BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254781179|ref|YP_003065592.1| D-alanine--D-alanine ligase
[Candidatus Liberibacter asiaticus str. psy62]
         (300 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done


Results from round 1


>gi|254781179|ref|YP_003065592.1| D-alanine--D-alanine ligase [Candidatus Liberibacter asiaticus str.
           psy62]
 gi|254040856|gb|ACT57652.1| D-alanine--D-alanine ligase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 300

 Score =  611 bits (1575), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 300/300 (100%), Positives = 300/300 (100%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG
Sbjct: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
           NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS
Sbjct: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG
Sbjct: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC
Sbjct: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR
Sbjct: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300


>gi|315122574|ref|YP_004063063.1| D-alanine--D-alanine ligase [Candidatus Liberibacter solanacearum
           CLso-ZC1]
 gi|313495976|gb|ADR52575.1| D-alanine--D-alanine ligase [Candidatus Liberibacter solanacearum
           CLso-ZC1]
          Length = 311

 Score =  479 bits (1232), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 224/300 (74%), Positives = 270/300 (90%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VLMGGISSER+VSL SG+ CA+ALED GFKV+ IDVDRS+GL+L+HLKPD+AFN LHG
Sbjct: 12  VVVLMGGISSERDVSLLSGRVCAAALEDWGFKVTSIDVDRSIGLILSHLKPDIAFNALHG 71

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDGL+Q+ILE LEIPYTHSGILASALSMDKMR+K++VSS GV VCPS+LVNR TMDS
Sbjct: 72  GFGEDGLIQSILEFLEIPYTHSGILASALSMDKMRAKKIVSSSGVSVCPSVLVNRITMDS 131

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           QH++SPPY+IKPLKGGSSLG+IV+ + +S+PLD+LQSSSW HGDQLL+EQY++GIEL+CG
Sbjct: 132 QHVMSPPYIIKPLKGGSSLGVIVVTEGESVPLDVLQSSSWIHGDQLLVEQYINGIELSCG 191

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           +MG+ +L VTEI   KSDFY+Y+ KYSS  S+HVLPA IP  I +EV+R++ +AHQAIGC
Sbjct: 192 IMGEQALSVTEIVSQKSDFYTYDSKYSSSVSSHVLPANIPWSILQEVRRISVVAHQAIGC 251

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           RGISRSDF+FDP+S+++FWLEIN QPGMT VSIFPEMAAYAGYSFR+LLLWM+EDASC R
Sbjct: 252 RGISRSDFIFDPVSKEIFWLEINTQPGMTNVSIFPEMAAYAGYSFRDLLLWMLEDASCSR 311


>gi|209550169|ref|YP_002282086.1| D-alanine--D-alanine ligase [Rhizobium leguminosarum bv. trifolii
           WSM2304]
 gi|209535925|gb|ACI55860.1| D-alanine/D-alanine ligase [Rhizobium leguminosarum bv. trifolii
           WSM2304]
          Length = 308

 Score =  380 bits (975), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 177/303 (58%), Positives = 228/303 (75%), Gaps = 3/303 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSER VSLSSGKACA ALE  GF V++IDV R V   LA LKPD+ FN LHG
Sbjct: 6   VAVLMGGFSSERPVSLSSGKACAEALEAEGFDVTRIDVARDVSEKLAALKPDVVFNALHG 65

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG +Q ILE LEIPYTHSG+LASAL+MDK ++K V ++ G+PV  S ++NRF   S
Sbjct: 66  PFGEDGTIQGILEYLEIPYTHSGVLASALAMDKDKAKLVAAAAGIPVAESQVINRFAFPS 125

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            H + PPYV+KP++ GSS G++++ +DQ+ P  ++ S  W +G+++L+E+YV G ELTCG
Sbjct: 126 THPMKPPYVVKPVREGSSFGVVIVTEDQAHPPQVVSSPEWRYGEEVLVERYVYGRELTCG 185

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           VMG+ +L VTE+     +FY Y+ KY++  S HV+PAKI  +IY+++QRLA  AHQAIGC
Sbjct: 186 VMGETALGVTEVVPQGHNFYDYDSKYAAGGSKHVIPAKISPNIYQKIQRLALRAHQAIGC 245

Query: 241 RGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           RG+SRSDF +D       ++ WLE+N QPGMTP S+ PEMA +AGYSF E L WMVEDAS
Sbjct: 246 RGVSRSDFRYDDRFTEDGEIIWLEVNTQPGMTPTSLVPEMAGHAGYSFGEFLRWMVEDAS 305

Query: 298 CLR 300
           CLR
Sbjct: 306 CLR 308


>gi|327194618|gb|EGE61468.1| D-alanine-D-alanine ligase protein [Rhizobium etli CNPAF512]
          Length = 337

 Score =  378 bits (970), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 178/303 (58%), Positives = 228/303 (75%), Gaps = 3/303 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSER VSLSSGKACA+ALE  GFKV+ IDV R V   LA LKPD+ FN LHG
Sbjct: 35  VAVLMGGFSSERPVSLSSGKACAAALEAEGFKVTCIDVARDVSEKLAALKPDVVFNALHG 94

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG +Q ILE LEIPYTHSG+LASAL+MDK ++K V ++ G+PV  S ++NRF   S
Sbjct: 95  PFGEDGTIQGILEYLEIPYTHSGVLASALAMDKDKAKLVAAAAGIPVAESQVINRFAFPS 154

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            H + PPYV+KP++ GSS G++++ +DQ+ P  ++ S  W++G+ +L+E+YV G ELTCG
Sbjct: 155 THPMKPPYVVKPVREGSSFGVVIVTEDQAHPPQVVSSPDWHYGEDVLVERYVYGRELTCG 214

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           VMGD +L VTE+     +FY Y+ KY++  S HV+PAKI  +IY+++Q LA  AHQAIGC
Sbjct: 215 VMGDVALGVTEVVPQGHNFYDYDSKYAAGGSKHVIPAKISPNIYQKIQTLALRAHQAIGC 274

Query: 241 RGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           RG+SRSDF +D       ++ WLE+N QPGMTP S+ PEMA +AGYSF E L WMVEDAS
Sbjct: 275 RGVSRSDFRYDDRFSEDGEIIWLEVNTQPGMTPTSLVPEMAGHAGYSFGEFLRWMVEDAS 334

Query: 298 CLR 300
           CLR
Sbjct: 335 CLR 337


>gi|190892579|ref|YP_001979121.1| D-alanine-D-alanine ligase [Rhizobium etli CIAT 652]
 gi|190697858|gb|ACE91943.1| D-alanine-D-alanine ligase protein [Rhizobium etli CIAT 652]
          Length = 308

 Score =  377 bits (969), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 178/303 (58%), Positives = 227/303 (74%), Gaps = 3/303 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSER VSLSSGKACA ALE  GFKV+ IDV R V   LA LKPD+ FN LHG
Sbjct: 6   VAVLMGGFSSERPVSLSSGKACAEALEAEGFKVTCIDVARDVSEKLAALKPDVVFNALHG 65

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG +Q ILE LEIPYTHSG+LASAL+MDK ++K V ++ G+PV  S ++NRF   S
Sbjct: 66  PFGEDGTIQGILEYLEIPYTHSGVLASALAMDKDKAKLVAAAAGIPVAESQVINRFAFPS 125

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            H + PPYV+KP++ GSS G++++ +DQ+ P  ++ S  W++G+ +L+E+YV G ELTCG
Sbjct: 126 THPMKPPYVVKPVREGSSFGVVIVAEDQAHPPQVVSSPEWHYGEDVLVERYVYGRELTCG 185

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           VMGD +L VTE+     +FY Y+ KY++  S HV+PAKI  +IY+++Q LA  AHQAIGC
Sbjct: 186 VMGDVALGVTEVVPQGHNFYDYDSKYAAGGSKHVIPAKISPNIYQKIQTLALRAHQAIGC 245

Query: 241 RGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           RG+SRSDF +D       ++ WLE+N QPGMTP S+ PEMA +AGYSF E L WMVEDAS
Sbjct: 246 RGVSRSDFRYDDRFSEDGEIIWLEVNTQPGMTPTSLVPEMAGHAGYSFGEFLRWMVEDAS 305

Query: 298 CLR 300
           CLR
Sbjct: 306 CLR 308


>gi|86358446|ref|YP_470338.1| D-alanine--D-alanine ligase [Rhizobium etli CFN 42]
 gi|86282548|gb|ABC91611.1| D-alanine-D-alanine ligase protein [Rhizobium etli CFN 42]
          Length = 308

 Score =  377 bits (967), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 175/303 (57%), Positives = 228/303 (75%), Gaps = 3/303 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSER VSLSSGKACA ALE  GFKV+ +DV R V   LA LKPD+ FN LHG
Sbjct: 6   VAVLMGGFSSERPVSLSSGKACAEALEAEGFKVTTLDVARDVSEKLAALKPDVVFNALHG 65

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG +Q ILE LEIPYTHSG+LASAL+MDK ++K+V ++ G+PV  S ++NRF   +
Sbjct: 66  PFGEDGTIQGILEYLEIPYTHSGVLASALAMDKGKAKRVAAAAGIPVAESQVINRFAFPA 125

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            H + PPYV+KP++ GSS G++++ +DQ+ P  ++ S  W++G+ +L+E+YV G ELTCG
Sbjct: 126 THPMKPPYVVKPVREGSSFGVVIVTEDQAHPPQVVSSPEWHYGEDVLVERYVYGRELTCG 185

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           VMGD +L VTE+     +FY Y+ KY++  S HV+PAKI  +IY+++Q LA  AHQAIGC
Sbjct: 186 VMGDVALGVTEVVPLGHNFYDYDSKYAAGGSKHVIPAKISPNIYQKIQTLALRAHQAIGC 245

Query: 241 RGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           RG+SRSDF +D       ++ WLE+N QPGMTP S+ PEMA +AGYSF + L WMVEDAS
Sbjct: 246 RGVSRSDFRYDDRLSDDGEIIWLEVNTQPGMTPTSLVPEMAGHAGYSFGQFLRWMVEDAS 305

Query: 298 CLR 300
           CLR
Sbjct: 306 CLR 308


>gi|222086439|ref|YP_002544973.1| D-alanine-D-alanine ligase protein [Agrobacterium radiobacter K84]
 gi|221723887|gb|ACM27043.1| D-alanine-D-alanine ligase protein [Agrobacterium radiobacter K84]
          Length = 308

 Score =  376 bits (966), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 171/303 (56%), Positives = 231/303 (76%), Gaps = 3/303 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG SSER VSLSSGKACA ALE  G++V+++DV+R V   LA LKPD+ FN LHG
Sbjct: 6   VAVLLGGFSSERPVSLSSGKACADALEAEGYRVTRVDVERDVSARLADLKPDVVFNALHG 65

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG +Q +LE L+IPYTHSG++ASAL+MDK R+K V +S G+PV  S+++NRF +  
Sbjct: 66  PFGEDGTIQGVLEYLQIPYTHSGVMASALAMDKARAKTVAASAGIPVAASLVLNRFDIAG 125

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +H +  PYV+KP++ GSS G++++K++Q+ P  ++ SS W +GD++++E+Y+ G ELTCG
Sbjct: 126 EHPMPAPYVVKPVREGSSFGVVIVKEEQAHPPQIIASSEWRYGDEVMVERYIHGRELTCG 185

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           VMGD +L VTEI      FY Y+ KY++  S HV+PA+I  ++Y+++Q LA  AHQAIGC
Sbjct: 186 VMGDTALGVTEIVPQGHSFYDYDSKYAAGGSKHVIPAEISPNLYQKIQLLALRAHQAIGC 245

Query: 241 RGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           RG+SRSDF FD       ++ WLEIN QPGMTP S+ PEMAA+AGYSF E L WMVED+S
Sbjct: 246 RGVSRSDFRFDDRFSEEGELIWLEINTQPGMTPTSLLPEMAAHAGYSFGEFLRWMVEDSS 305

Query: 298 CLR 300
           C R
Sbjct: 306 CSR 308


>gi|218674672|ref|ZP_03524341.1| D-alanine--D-alanine ligase [Rhizobium etli GR56]
          Length = 308

 Score =  376 bits (965), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 176/303 (58%), Positives = 228/303 (75%), Gaps = 3/303 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSER VSLSSGKACA+ALE  GF+V+ IDV R V   LA LKPD+ FN LHG
Sbjct: 6   VAVLMGGFSSERPVSLSSGKACAAALEAEGFQVTCIDVARDVSERLAALKPDVVFNALHG 65

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG +Q ILE LEIPYTHSG+LASAL+MDK ++K V ++ G+PV  S ++NRF   S
Sbjct: 66  PFGEDGTIQGILEYLEIPYTHSGVLASALAMDKDKAKLVAAAAGIPVAESQVINRFAFPS 125

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            H + PPYV+KP++ GSS G++++ +DQ+ P  ++ S  W +G+++L+E+YV G ELTCG
Sbjct: 126 THPMKPPYVVKPVREGSSFGVVIVTEDQAHPPQIVSSPEWRYGEEVLVERYVYGRELTCG 185

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           VMG+ +L VTE+     +FY Y+ KY++  S HV+PAKI  +IY+++Q LA  AHQAIGC
Sbjct: 186 VMGETALGVTEVVPQGHNFYDYDSKYAAGGSKHVIPAKISPNIYQKIQTLAVRAHQAIGC 245

Query: 241 RGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           RG+SRSDF +D       ++ WLE+N QPGMTP S+ PEMA +AGYSF E L WMVEDAS
Sbjct: 246 RGVSRSDFRYDDRFSEDGEIIWLEVNTQPGMTPTSLVPEMAGHAGYSFGEFLRWMVEDAS 305

Query: 298 CLR 300
           CLR
Sbjct: 306 CLR 308


>gi|218462241|ref|ZP_03502332.1| D-alanine--D-alanine ligase [Rhizobium etli Kim 5]
          Length = 308

 Score =  376 bits (965), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 178/303 (58%), Positives = 228/303 (75%), Gaps = 3/303 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSER VSLSSGKACA+ALE  GFKV+ IDV R V   LA LKPD+ FN LHG
Sbjct: 6   VAVLMGGFSSERPVSLSSGKACAAALEAEGFKVTCIDVARDVSEKLAALKPDVVFNALHG 65

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG +Q ILE LEIPYTHSG+LASAL+MDK ++K V ++ G+PV  S +VNRF   S
Sbjct: 66  PFGEDGTIQGILEYLEIPYTHSGVLASALAMDKDKAKLVAAAAGIPVAESQVVNRFAFPS 125

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            H + PPYV+KP++ GSS G++++ +DQ+ P  ++ S  W++G+++L+E+YV G ELTCG
Sbjct: 126 AHPMRPPYVVKPVREGSSFGVVIVTEDQAHPPQVVSSPEWHYGEEVLVERYVYGRELTCG 185

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           VMG+ +L VTE+     +FY Y+ KY+   S HV+PAKI  +IY+++Q LA  AHQAIGC
Sbjct: 186 VMGETALGVTEVVPLGHNFYDYDSKYAVGGSKHVIPAKISPNIYQKIQTLAVRAHQAIGC 245

Query: 241 RGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           RG+SRSDF +D       ++ WLE+N QPGMTP S+ PEMA +AGYSF E L WMVEDAS
Sbjct: 246 RGVSRSDFRYDDRFSEDGEIIWLEVNTQPGMTPTSLVPEMAGHAGYSFGEFLRWMVEDAS 305

Query: 298 CLR 300
           CLR
Sbjct: 306 CLR 308


>gi|218663185|ref|ZP_03519115.1| D-alanine--D-alanine ligase [Rhizobium etli IE4771]
          Length = 308

 Score =  375 bits (962), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 178/303 (58%), Positives = 227/303 (74%), Gaps = 3/303 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSER VSLSSGKACA+ALE  GFKV+ IDV R V   LA LKPD+ FN LHG
Sbjct: 6   VAVLMGGFSSERPVSLSSGKACAAALEAEGFKVTCIDVARDVSEKLAALKPDVVFNALHG 65

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG +Q ILE LEIPYTHSG+LASAL+MDK ++K V ++ G+PV  S +VNRF   S
Sbjct: 66  PFGEDGTIQGILEYLEIPYTHSGVLASALAMDKDKAKLVAAAAGIPVAESQVVNRFAFPS 125

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            H + PPYV+KP++ GSS G++++ +DQ+ P  ++ S  W++G+ +L+E+YV G ELTCG
Sbjct: 126 AHPMRPPYVVKPVREGSSFGVVIVTEDQAHPPQVVSSPEWHYGEDVLVERYVYGRELTCG 185

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           VMG+ +L VTE+     +FY Y+ KY+   S HV+PAKI  +IY+++Q LA  AHQAIGC
Sbjct: 186 VMGETALGVTEVVPLGHNFYDYDSKYAVGGSKHVIPAKISPNIYQKIQTLALRAHQAIGC 245

Query: 241 RGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           RG+SRSDF +D       ++ WLE+N QPGMTP S+ PEMA +AGYSF E L WMVEDAS
Sbjct: 246 RGVSRSDFRYDDRFSEDGEIIWLEVNTQPGMTPTSLVPEMAGHAGYSFGEFLRWMVEDAS 305

Query: 298 CLR 300
           CLR
Sbjct: 306 CLR 308


>gi|227822648|ref|YP_002826620.1| D-alanine--D-alanine ligase [Sinorhizobium fredii NGR234]
 gi|254767735|sp|C3MEM6|DDL_RHISN RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|227341649|gb|ACP25867.1| D-alanine--D-alanine ligase [Sinorhizobium fredii NGR234]
          Length = 306

 Score =  372 bits (954), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 173/301 (57%), Positives = 224/301 (74%), Gaps = 1/301 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSER VSLSSG ACA ALE  G++VS++DV R V  VLA L+PD+ FN LHG
Sbjct: 6   VAVLMGGFSSERPVSLSSGAACADALEAEGYRVSRVDVGRDVAAVLADLRPDIVFNALHG 65

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG +Q ILE LEIPYTHSG+LASAL+MDK ++K V  + G+PV  +++++R    +
Sbjct: 66  PFGEDGTIQGILEYLEIPYTHSGVLASALAMDKAQAKHVAKAAGIPVADALIMDRREFGN 125

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            H + PPYV+KP++ GSS G++++K+DQS P  ++ SS W +GD++++E+Y+ G ELTCG
Sbjct: 126 AHPMKPPYVVKPVREGSSFGVVIVKEDQSHPPQVITSSEWRYGDRVMVERYIAGRELTCG 185

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           VMGD +L VTEI      FY Y+ KY    S HV+PA+I  +IY+++Q LA  AHQAIGC
Sbjct: 186 VMGDVALGVTEIIPQGHAFYDYDSKYVKGGSAHVIPAQISPNIYQKIQSLAVKAHQAIGC 245

Query: 241 RGISRSDFLFDPLSR-KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
           RG+SRSDF FD     ++ WLEIN QPGMTP S+ PEMA +AG  F E L WMVEDASCL
Sbjct: 246 RGVSRSDFRFDDRGEGELIWLEINTQPGMTPTSLVPEMAQHAGLQFGEFLRWMVEDASCL 305

Query: 300 R 300
           R
Sbjct: 306 R 306


>gi|241205551|ref|YP_002976647.1| D-alanine--D-alanine ligase [Rhizobium leguminosarum bv. trifolii
           WSM1325]
 gi|240859441|gb|ACS57108.1| D-alanine/D-alanine ligase [Rhizobium leguminosarum bv. trifolii
           WSM1325]
          Length = 308

 Score =  372 bits (954), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 173/303 (57%), Positives = 225/303 (74%), Gaps = 3/303 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSER VSLSSGKACA ALE  GF V++IDV R V   LA LKPD+ FN LHG
Sbjct: 6   VAVLMGGFSSERPVSLSSGKACAEALEAEGFDVTRIDVARDVSEKLAALKPDVVFNALHG 65

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG +Q ILE LEIPYTHSG+LASAL+MDK ++K V  + G+PV  S +VNRF   +
Sbjct: 66  PFGEDGTIQGILEYLEIPYTHSGVLASALAMDKDKAKLVAGAAGIPVAESQVVNRFAFPA 125

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            H + PPYV+KP++ GSS G++++ +DQ+ P  ++ S  W +G+++++E+YV G ELTCG
Sbjct: 126 THPMKPPYVVKPVREGSSFGVVIVTEDQAHPPQIVSSPEWRYGEEVIVERYVYGRELTCG 185

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           VMG+  L VTE+     +FY Y+ KY++  S HV+PAKI  +IY+++Q L+  AHQAIGC
Sbjct: 186 VMGETPLGVTEVVPQGHNFYDYDSKYAAGGSKHVIPAKISPNIYQKIQTLSLRAHQAIGC 245

Query: 241 RGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           RG+SRSDF +D       ++ WLE+N QPGMTP S+ PEMA +AGYSF + L WMVEDAS
Sbjct: 246 RGVSRSDFRYDDRFSEDGEIIWLEVNTQPGMTPTSLVPEMAGHAGYSFGQFLRWMVEDAS 305

Query: 298 CLR 300
           CLR
Sbjct: 306 CLR 308


>gi|13471546|ref|NP_103112.1| D-alanine--D-alanine ligase [Mesorhizobium loti MAFF303099]
 gi|39931185|sp|Q98KB6|DDLB_RHILO RecName: Full=D-alanine--D-alanine ligase B; AltName:
           Full=D-Ala-D-Ala ligase B; AltName: Full=D-alanylalanine
           synthetase B
 gi|14022288|dbj|BAB48898.1| D-alanyl-D-alanine ligase [Mesorhizobium loti MAFF303099]
          Length = 308

 Score =  371 bits (952), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 173/303 (57%), Positives = 228/303 (75%), Gaps = 3/303 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG SSER VSLSSGKACA ALE+ G++V+++DV R VG VLA LKPD+AFN LHG
Sbjct: 6   VAVLLGGFSSERPVSLSSGKACADALENEGYQVTRVDVGRDVGSVLAELKPDVAFNALHG 65

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG +Q ILE L IPYTHSG+LASAL+M+K ++K++V + GVPV  S + NRF + +
Sbjct: 66  PFGEDGTIQGILEYLGIPYTHSGVLASALAMNKEQAKKIVKTVGVPVAESKVANRFAIQN 125

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +H + PPYVIKP+  GSS G++++ + QS P  ++ SS W +GD +++E+Y+ G ELTC 
Sbjct: 126 KHPMKPPYVIKPVNEGSSFGVVIVSEGQSHPPQVVGSSEWKYGDTVMVERYIHGRELTCA 185

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           VMGD +L V EI      FY Y+ KY +  S H  PAK+  +IY+++Q LA  AHQA+GC
Sbjct: 186 VMGDVALGVCEIIPTGHSFYDYDSKYVAGGSKHECPAKVSPNIYQKIQTLALKAHQAVGC 245

Query: 241 RGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           RG+SRSDF +D     + +V WLE+N QPGMTP S+ PE+AA+AG+SF ELL WMVEDAS
Sbjct: 246 RGVSRSDFRYDDRHSENGEVVWLEVNTQPGMTPTSLVPEIAAHAGHSFGELLSWMVEDAS 305

Query: 298 CLR 300
           CLR
Sbjct: 306 CLR 308


>gi|116253042|ref|YP_768880.1| D-alanine--D-alanine ligase [Rhizobium leguminosarum bv. viciae
           3841]
 gi|115257690|emb|CAK08788.1| putative D-alanine--D-alanine ligase B [Rhizobium leguminosarum bv.
           viciae 3841]
          Length = 308

 Score =  370 bits (949), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 173/303 (57%), Positives = 225/303 (74%), Gaps = 3/303 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSER VSLSSGKACA ALE  GF V++IDV R V   LA LKPD+ FN LHG
Sbjct: 6   VAVLMGGFSSERPVSLSSGKACAEALEAEGFDVTRIDVARDVSEKLAALKPDVVFNALHG 65

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG +Q ILE LEIPYTHSG+LASAL+MDK ++K V ++ G+ V  S +VNRF   S
Sbjct: 66  PFGEDGTIQGILEYLEIPYTHSGVLASALAMDKDKAKLVAAAAGITVAESQVVNRFAFPS 125

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            H + PPYV+KP++ GSS G++++ +DQ+ P  ++ S  W +G+++++E+YV G ELTCG
Sbjct: 126 THPMKPPYVVKPVREGSSFGVVIVTEDQAHPPQIVSSPEWRYGEEVIVERYVYGRELTCG 185

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           VMG+  L VTE+     +FY Y+ KY++  S HV+PAKI  +IY+++Q L+  AHQAIGC
Sbjct: 186 VMGETPLGVTEVVPQGHNFYDYDSKYAAGGSKHVIPAKISPNIYQKIQTLSLRAHQAIGC 245

Query: 241 RGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           RG+SRSDF +D       ++ WLE+N QPGMTP S+ PEMA +AGYSF + L WMVEDAS
Sbjct: 246 RGVSRSDFRYDDRFSEDGEIIWLEVNTQPGMTPTSLVPEMAGHAGYSFGQFLRWMVEDAS 305

Query: 298 CLR 300
           CLR
Sbjct: 306 CLR 308


>gi|15965924|ref|NP_386277.1| D-alanine--D-alanine ligase [Sinorhizobium meliloti 1021]
 gi|307308234|ref|ZP_07587943.1| D-alanine/D-alanine ligase [Sinorhizobium meliloti BL225C]
 gi|39930910|sp|Q92NM4|DDL_RHIME RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|15075193|emb|CAC46750.1| Probable D-alanine--D-alanine ligase B [Sinorhizobium meliloti
           1021]
 gi|306901232|gb|EFN31838.1| D-alanine/D-alanine ligase [Sinorhizobium meliloti BL225C]
          Length = 308

 Score =  367 bits (943), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 170/303 (56%), Positives = 224/303 (73%), Gaps = 3/303 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG SSER VSLSSG ACA ALE  G++V+++DV R V  VL  L+PD+ FN LHG
Sbjct: 6   VAVLLGGFSSERPVSLSSGTACADALEAEGYRVTRVDVGRDVAAVLQELRPDVVFNALHG 65

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG +Q ILE LEIPYTHSG+LASAL+MDK ++K V  + G+PV  +++++R +  +
Sbjct: 66  PFGEDGTIQGILEYLEIPYTHSGVLASALAMDKDQAKHVAKAAGIPVAEALVMDRRSFGN 125

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           QH + PPYV+KP++ GSS G++++K+DQS P  ++ SS W +GD++++E+Y+ G E TCG
Sbjct: 126 QHPMKPPYVVKPVREGSSFGVVIVKEDQSHPPQVITSSEWRYGDRVMVERYIAGREFTCG 185

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           VMGD +L VTEI      FY Y+ KY    S HV+PA+I  +IY+++Q LA  AHQAIGC
Sbjct: 186 VMGDVALGVTEIIPQGHAFYDYDSKYVKGGSKHVIPAQISPNIYQKIQTLALKAHQAIGC 245

Query: 241 RGISRSDFLFDPLSR---KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           RG+SRSDF FD       ++ WLEIN QPGMTP S+ PEMA +AG  F E L WMVEDAS
Sbjct: 246 RGVSRSDFRFDDRGDGEGELIWLEINTQPGMTPTSLVPEMAQHAGLQFGEFLRWMVEDAS 305

Query: 298 CLR 300
           CLR
Sbjct: 306 CLR 308


>gi|150397278|ref|YP_001327745.1| D-alanine--D-alanine ligase [Sinorhizobium medicae WSM419]
 gi|166198504|sp|A6UB80|DDL_SINMW RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|150028793|gb|ABR60910.1| D-alanine--D-alanine ligase [Sinorhizobium medicae WSM419]
          Length = 308

 Score =  367 bits (941), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 169/303 (55%), Positives = 223/303 (73%), Gaps = 3/303 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG SSER VSLSSG ACA ALE  G++V+++DV   V  VL  L+PD+ FN LHG
Sbjct: 6   VAVLLGGFSSERPVSLSSGTACADALEGEGYRVTRVDVGHDVAAVLQELRPDVVFNALHG 65

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG +Q ILE LEIPYTHSG+LASAL+MDK ++K V  + G+PV  +++++R +  +
Sbjct: 66  PFGEDGTIQGILEYLEIPYTHSGVLASALAMDKAQAKHVAKAAGIPVAEAVVMDRRSFGN 125

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           QH + PPYV+KP++ GSS G++++K+DQS P  ++ SS W +GD++++E+YV G E TCG
Sbjct: 126 QHPMKPPYVVKPVREGSSFGVVIVKEDQSHPPQVITSSDWRYGDRIMVERYVAGREFTCG 185

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           VMGD +L VTEI      FY Y+ KY    S HV+PA++  +IY+++Q LA  AHQAIGC
Sbjct: 186 VMGDVALGVTEIIPQGHAFYDYDSKYVKGGSKHVIPAQVSPNIYQKIQTLALKAHQAIGC 245

Query: 241 RGISRSDFLFDPLSR---KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           RG+SRSDF FD       ++ WLEIN QPGMTP S+ PEMA +AG  F E L WMVEDAS
Sbjct: 246 RGVSRSDFRFDDRGDGEGELIWLEINTQPGMTPTSLVPEMAQHAGLRFGEFLRWMVEDAS 305

Query: 298 CLR 300
           CLR
Sbjct: 306 CLR 308


>gi|307319701|ref|ZP_07599126.1| D-alanine/D-alanine ligase [Sinorhizobium meliloti AK83]
 gi|306894632|gb|EFN25393.1| D-alanine/D-alanine ligase [Sinorhizobium meliloti AK83]
          Length = 308

 Score =  366 bits (940), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 169/303 (55%), Positives = 224/303 (73%), Gaps = 3/303 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG SSER VSLSSG ACA ALE  G++V+++DV R V  VL  L+PD+ FN LHG
Sbjct: 6   VAVLLGGFSSERPVSLSSGTACADALEAEGYRVTRVDVGRDVAAVLQELRPDVVFNALHG 65

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG +Q ILE LEIPYTHSG+L+SAL+MDK ++K V  + G+PV  +++++R +  +
Sbjct: 66  PFGEDGTIQGILEYLEIPYTHSGVLSSALAMDKDQAKHVAKAAGIPVAEALVMDRRSFGN 125

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           QH + PPYV+KP++ GSS G++++K+DQS P  ++ SS W +GD++++E+Y+ G E TCG
Sbjct: 126 QHPMKPPYVVKPVREGSSFGVVIVKEDQSHPPQVITSSEWRYGDRVMVERYIAGREFTCG 185

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           VMGD +L VTEI      FY Y+ KY    S HV+PA+I  +IY+++Q LA  AHQAIGC
Sbjct: 186 VMGDVALGVTEIIPQGHAFYDYDSKYVKGGSKHVIPAQISPNIYQKIQTLALKAHQAIGC 245

Query: 241 RGISRSDFLFDPLSR---KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           RG+SRSDF FD       ++ WLEIN QPGMTP S+ PEMA +AG  F E L WMVEDAS
Sbjct: 246 RGVSRSDFRFDDRGDGEGELIWLEINTQPGMTPTSLVPEMAQHAGLQFGEFLRWMVEDAS 305

Query: 298 CLR 300
           CLR
Sbjct: 306 CLR 308


>gi|260462093|ref|ZP_05810337.1| D-alanine/D-alanine ligase [Mesorhizobium opportunistum WSM2075]
 gi|259031953|gb|EEW33220.1| D-alanine/D-alanine ligase [Mesorhizobium opportunistum WSM2075]
          Length = 308

 Score =  361 bits (926), Expect = 8e-98,   Method: Compositional matrix adjust.
 Identities = 169/303 (55%), Positives = 222/303 (73%), Gaps = 3/303 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG SSER VSLSSGKACA  LE  G++V+++DV R VG VLA LKPD+AFN LHG
Sbjct: 6   VAVLLGGFSSERPVSLSSGKACADELEKEGYQVTRVDVGRDVGSVLAELKPDVAFNALHG 65

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG +Q ILE L IPYTHSG+LASAL+M+K ++K+V  S G PV  S + +RF +  
Sbjct: 66  PFGEDGTIQGILEYLAIPYTHSGVLASALAMNKEQAKRVAKSVGTPVAESKVTSRFAIQD 125

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +H + PPYV+KP+  GSS G++++ + QS P  ++ SS W +GD +++E+Y+ G ELTC 
Sbjct: 126 KHPMKPPYVVKPVSEGSSFGVVIVSEGQSHPPQVIGSSEWKYGDTVMVERYIHGRELTCA 185

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           VMGD +L V EI      FY Y+ KY +  S H  PAK+  +IY+++Q LA  AHQ IGC
Sbjct: 186 VMGDVALGVCEIIPTGHSFYDYDSKYVAGGSKHECPAKVSPNIYQKIQTLALKAHQVIGC 245

Query: 241 RGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           RG+SRSDF +D     + +V WLE+N QPGMTP S+ PE+AA+AG+SF +LL WMVEDAS
Sbjct: 246 RGVSRSDFRYDDRHSENGEVVWLEVNTQPGMTPTSLVPEIAAHAGHSFGDLLSWMVEDAS 305

Query: 298 CLR 300
           CLR
Sbjct: 306 CLR 308


>gi|319782851|ref|YP_004142327.1| D-alanine/D-alanine ligase [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317168739|gb|ADV12277.1| D-alanine/D-alanine ligase [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 308

 Score =  360 bits (923), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 169/303 (55%), Positives = 224/303 (73%), Gaps = 3/303 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG SSER VSLSSGKACA  LE  G++V+++DV R VG VLA LKPD+AFN LHG
Sbjct: 6   VAVLLGGFSSERPVSLSSGKACADELEKEGYQVTRVDVGRDVGSVLAELKPDVAFNALHG 65

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG +Q ILE L IPYTHSG+LASAL+M+K ++K+V  S G+ V  S + +RF + +
Sbjct: 66  PFGEDGTIQGILEYLGIPYTHSGVLASALAMNKEQAKRVAKSVGIVVAESKVASRFAIQN 125

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +H + PPYV+KP+  GSS G++++ + QS P  +L SS W +GD +++E+Y+ G ELTC 
Sbjct: 126 KHPMKPPYVVKPVNEGSSFGVVIVHEGQSHPPQVLGSSEWKYGDTVMVERYIHGRELTCA 185

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           VMGD +L V EI      FY Y+ KY +  S H  PAK+  +IY+++Q LA  AHQAIGC
Sbjct: 186 VMGDVALGVCEIIPTGHSFYDYDSKYVAGGSKHECPAKVSPNIYQKIQTLALKAHQAIGC 245

Query: 241 RGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           RG+SRSDF +D     + ++ WLE+N QPGMTP S+ PE+AA+AG+SF +LL WMVEDAS
Sbjct: 246 RGVSRSDFRYDDRHSENGEIVWLEVNTQPGMTPTSLVPEIAAHAGHSFGDLLSWMVEDAS 305

Query: 298 CLR 300
           CLR
Sbjct: 306 CLR 308


>gi|325293460|ref|YP_004279324.1| D-alanine-D-alanine ligase [Agrobacterium sp. H13-3]
 gi|325061313|gb|ADY65004.1| D-alanine-D-alanine ligase [Agrobacterium sp. H13-3]
          Length = 308

 Score =  357 bits (915), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 169/303 (55%), Positives = 228/303 (75%), Gaps = 3/303 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG SSER VSLSSG ACA ALE  G+KV+++DV R +  VL  L+PD+AFN LHG
Sbjct: 6   VAVLLGGFSSERPVSLSSGNACALALEGEGYKVTRVDVGRDIAAVLGELRPDVAFNALHG 65

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG +Q ILE L IPYTHSG+LASAL+MDK ++K+V ++ G+PV    ++NRF   S
Sbjct: 66  PFGEDGTIQGILEYLAIPYTHSGVLASALAMDKAQAKKVAAAAGIPVADERVMNRFEFTS 125

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +H ++PPYV+KP++ GSS G++++K+DQS P  +L SS W +GD +++E+Y+ G ELTCG
Sbjct: 126 EHPLAPPYVVKPVREGSSFGVVIVKEDQSHPPQILTSSEWRYGDHVMVERYIHGRELTCG 185

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V+   +L VTE+     +FY Y+ KY++  S HV+PA+I   IY+++Q LA +AH+AIGC
Sbjct: 186 VLDGEALGVTEVVPLGHNFYDYDAKYAAGGSKHVIPAEISPKIYQKIQTLAVMAHRAIGC 245

Query: 241 RGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           RG+SRSDF +D       +V WLE+N QPGMTP S+ PEMAA+AG SF  L+ WMVEDAS
Sbjct: 246 RGVSRSDFRYDDRFSEDGEVIWLEVNTQPGMTPTSLVPEMAAHAGRSFGNLVSWMVEDAS 305

Query: 298 CLR 300
           CLR
Sbjct: 306 CLR 308


>gi|114705266|ref|ZP_01438174.1| D-alanine-D-alanine ligase protein [Fulvimarina pelagi HTCC2506]
 gi|114540051|gb|EAU43171.1| D-alanine-D-alanine ligase protein [Fulvimarina pelagi HTCC2506]
          Length = 307

 Score =  357 bits (915), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 170/303 (56%), Positives = 221/303 (72%), Gaps = 3/303 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG+SSER VSL SG+ACA+ALE  GF+VS++DVDR V   LA LKPD+AFN LHG
Sbjct: 5   VAVLMGGLSSERPVSLRSGEACAAALEGEGFQVSRVDVDRKVAETLATLKPDVAFNALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG +Q ILE L+IPYTHSG+ ASAL+M+K+ +K VV S GVPV    ++ R  +  
Sbjct: 65  PYGEDGRIQGILEYLQIPYTHSGVTASALAMNKLLAKTVVISAGVPVAKGHVMKRQEIAD 124

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            H  SPPYVIKP+  GSS G+I++++DQ  P   L S  W  G+ LL+EQ+V G ELTC 
Sbjct: 125 THPFSPPYVIKPIAEGSSFGVIIVREDQPHPPQSLSSPEWTFGEDLLVEQFVHGRELTCA 184

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           VMGD +LDV EI      FY Y+ KYS   S H++PA+IP D+ +++Q  + LAH+AIGC
Sbjct: 185 VMGDVALDVCEITTEGHAFYDYDSKYSDGGSVHIVPAEIPGDVARKIQEWSLLAHRAIGC 244

Query: 241 RGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           RG++RSDF +D       +V WLE+N QPGMTPVS+ P++AA +G+SF +L+ WMVEDAS
Sbjct: 245 RGVTRSDFRYDDRFGSGGEVAWLEVNTQPGMTPVSLVPDIAAKSGHSFADLVRWMVEDAS 304

Query: 298 CLR 300
           C R
Sbjct: 305 CER 307


>gi|153009077|ref|YP_001370292.1| D-alanine--D-alanine ligase [Ochrobactrum anthropi ATCC 49188]
 gi|166198496|sp|A6WZQ9|DDL_OCHA4 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|151560965|gb|ABS14463.1| D-alanine--D-alanine ligase [Ochrobactrum anthropi ATCC 49188]
          Length = 308

 Score =  356 bits (913), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 175/303 (57%), Positives = 231/303 (76%), Gaps = 3/303 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSER VSLSSG ACA+ LE+ G+ V++IDVDR+V  VLA LKPD+AFN LHG
Sbjct: 6   VAVLMGGFSSERPVSLSSGTACAATLEERGYCVTRIDVDRNVASVLAELKPDVAFNALHG 65

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG +Q +LE L+IPYTHSG+LASAL+MDK R+K+V ++ GV V  S+L+NRF + +
Sbjct: 66  PFGEDGAIQGVLEYLQIPYTHSGVLASALAMDKDRAKKVAAAAGVAVASSLLLNRFEIGT 125

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +H + PPYV+KP++ GSS G++++K+DQ+ P  ++ S+ WN+G ++L+E+Y+ G ELTC 
Sbjct: 126 EHPMEPPYVVKPVREGSSFGVVIVKEDQTHPPQIISSAEWNYGAEVLVEKYIPGRELTCA 185

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           VMGD  +DV EI      FY Y+ KY +  S+HV PAKI  +IY+++Q +A  AH+AIGC
Sbjct: 186 VMGDRVMDVCEIIPVGHQFYDYDSKYVAGASSHVCPAKILPNIYQKIQTMALTAHRAIGC 245

Query: 241 RGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           RG+SRSDF FD       +V WLEIN QPGMTP S+ P++A  AG SF ELL WMVEDAS
Sbjct: 246 RGVSRSDFRFDDRFSDDGEVIWLEINTQPGMTPTSLVPDIAKAAGISFGELLSWMVEDAS 305

Query: 298 CLR 300
           CLR
Sbjct: 306 CLR 308


>gi|159185044|ref|NP_355054.2| D-alanine--D-alanine ligase [Agrobacterium tumefaciens str. C58]
 gi|22095557|sp|Q8UDN3|DDL_AGRT5 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|159140318|gb|AAK87839.2| D-alanylalanine synthetase [Agrobacterium tumefaciens str. C58]
          Length = 308

 Score =  355 bits (910), Expect = 6e-96,   Method: Compositional matrix adjust.
 Identities = 171/303 (56%), Positives = 227/303 (74%), Gaps = 3/303 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG SSER VSLSSG ACA ALE  G+KV+++DV R V  VL  L+PD+AFN LHG
Sbjct: 6   VAVLLGGFSSERPVSLSSGNACALALEGEGYKVTRVDVGRDVAAVLDELRPDVAFNALHG 65

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG +Q ILE L IPYTHSG+LASAL+MDK ++K+V ++ G+PV    ++NRF   S
Sbjct: 66  PFGEDGTIQGILEYLAIPYTHSGVLASALAMDKAQAKKVAAAAGIPVAGERVMNRFDFTS 125

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +H + PPYV+KP++ GSS G++++K+DQS P  +L SS W  G+Q+++E+Y+ G ELTCG
Sbjct: 126 EHPLQPPYVVKPVREGSSFGVVIVKEDQSHPPQILTSSEWPFGNQVMVERYIHGRELTCG 185

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V+   +L VTE+     +FY Y+ KY++  S HV+PA I   IY+++Q LA +AHQAIGC
Sbjct: 186 VLDGEALGVTEVVPLGHNFYDYDAKYAAGGSKHVIPAGISPKIYQKIQTLAVMAHQAIGC 245

Query: 241 RGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           RG+SRSDF +D       +V WLE+N QPGMTP S+ PEMAA+AG SF +L+ WMVEDAS
Sbjct: 246 RGVSRSDFRYDDRFSEDGEVIWLEVNTQPGMTPTSLVPEMAAHAGRSFGDLVSWMVEDAS 305

Query: 298 CLR 300
           CLR
Sbjct: 306 CLR 308


>gi|110634354|ref|YP_674562.1| D-alanine--D-alanine ligase [Mesorhizobium sp. BNC1]
 gi|123353549|sp|Q11GS8|DDL_MESSB RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|110285338|gb|ABG63397.1| D-alanine--D-alanine ligase [Chelativorans sp. BNC1]
          Length = 308

 Score =  354 bits (909), Expect = 7e-96,   Method: Compositional matrix adjust.
 Identities = 169/303 (55%), Positives = 219/303 (72%), Gaps = 3/303 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSER VSLSSG +CA ALE  G++VS++DV R V  VL+ LKPD+AFN LHG
Sbjct: 6   VAVLMGGFSSERPVSLSSGNSCADALEAEGYRVSRVDVSRDVSRVLSELKPDVAFNALHG 65

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG VQ +LE L IPYTHSG+LASAL+MDK  +K V  S G+PV  S ++NRF +  
Sbjct: 66  PFGEDGTVQGVLEYLGIPYTHSGVLASALAMDKDLAKTVAKSAGIPVASSRVMNRFEIGD 125

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +H + PPYV+KP+  GSS G++++++ QS P  +L S+ W +G+++++E+Y+ G ELTC 
Sbjct: 126 KHPMEPPYVVKPVAEGSSFGVVIVREGQSHPPQVLGSAEWGYGERVMVERYIPGRELTCA 185

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           VMGD  L V EI      FY Y+ KY+   S HV PA+I  +IY++++RLA  AHQAIGC
Sbjct: 186 VMGDRVLGVCEIVPVGHSFYDYDSKYAPGGSRHVCPAEISPNIYQKIERLALKAHQAIGC 245

Query: 241 RGISRSDFLFD---PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           RG+SRSDF +D   P    + WLEIN QPGMTP S+ P++AA AG  F  LL WMVEDAS
Sbjct: 246 RGVSRSDFRYDDRLPGEEGIVWLEINTQPGMTPTSLVPDIAAQAGIGFGALLSWMVEDAS 305

Query: 298 CLR 300
           C R
Sbjct: 306 CPR 308


>gi|239832306|ref|ZP_04680635.1| D-alanine--D-alanine ligase [Ochrobactrum intermedium LMG 3301]
 gi|239824573|gb|EEQ96141.1| D-alanine--D-alanine ligase [Ochrobactrum intermedium LMG 3301]
          Length = 320

 Score =  354 bits (909), Expect = 8e-96,   Method: Compositional matrix adjust.
 Identities = 173/303 (57%), Positives = 230/303 (75%), Gaps = 3/303 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSER VSLSSG +CA+ LE+ G++V++IDVDR+V  VLA LKPD+ FN LHG
Sbjct: 18  VAVLMGGFSSERPVSLSSGASCAATLEECGYRVTRIDVDRNVATVLAELKPDVVFNALHG 77

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG +Q +LE L+IPYTHSG+LASAL+MDK R+K+V ++ GV V PS+L+NRF + +
Sbjct: 78  PFGEDGAIQGVLEYLQIPYTHSGVLASALAMDKDRAKKVAAAAGVAVAPSLLLNRFEIGT 137

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +H + PPYV+KP++ GSS G++++K DQ+ P  ++ S+ WN+G ++L+E+Y+ G ELTC 
Sbjct: 138 EHPMKPPYVVKPVREGSSFGVVIVKDDQAHPPQIISSAEWNYGAEVLVEKYIPGRELTCS 197

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           VM D ++DV EI      FY Y+ KY +  STHV PAKI  +IY+++Q +A  AH+AIGC
Sbjct: 198 VMDDRAMDVCEIIPVGHQFYDYDSKYVAGASTHVCPAKILPNIYQKIQTMALTAHRAIGC 257

Query: 241 RGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           RG+SRSDF FD       +V WLEIN QPGMT  S+ P++A  AG SF ELL WMVEDAS
Sbjct: 258 RGVSRSDFRFDDRFSEDGEVIWLEINTQPGMTSTSLVPDIARAAGISFGELLSWMVEDAS 317

Query: 298 CLR 300
           CLR
Sbjct: 318 CLR 320


>gi|304392253|ref|ZP_07374195.1| D-alanine--D-alanine ligase [Ahrensia sp. R2A130]
 gi|303296482|gb|EFL90840.1| D-alanine--D-alanine ligase [Ahrensia sp. R2A130]
          Length = 316

 Score =  351 bits (901), Expect = 7e-95,   Method: Compositional matrix adjust.
 Identities = 161/303 (53%), Positives = 222/303 (73%), Gaps = 3/303 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSER VSLS+G +CA ALE  G++V+++DVDR+V   LA LKPD+AFN LHG
Sbjct: 14  VAVLMGGWSSERPVSLSTGNSCADALEAEGYRVTRVDVDRNVSATLADLKPDVAFNGLHG 73

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q ILE L+IPYTHSG++ASAL+MDK R+K V    G+PV  + +++R     
Sbjct: 74  PHGEDGTIQGILEYLDIPYTHSGVMASALAMDKERAKTVARRAGIPVAEAKVMHRLEAAE 133

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +H++ PPYV+KP+  GSS G++++ +D+S P   L S  W +GD +++E+++ G ELTC 
Sbjct: 134 KHVMKPPYVVKPVNEGSSFGVLIVCEDRSTPPQELYSDEWPYGDTVMVERFIHGRELTCA 193

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           VMGD +L VTEI      +Y Y+ KY+   STHVLPA+I  +IY+++Q L+  AH+AIGC
Sbjct: 194 VMGDVALGVTEITAADGGWYDYDAKYAEGGSTHVLPAEILPNIYQKIQTLSLKAHEAIGC 253

Query: 241 RGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           RG+SRSDF  D     + ++ WLE+N QPGMTP S+ PE+A +AG++F +LL WMVEDAS
Sbjct: 254 RGVSRSDFRLDDRVNGTGELIWLEVNTQPGMTPTSLLPELAQHAGHTFGDLLSWMVEDAS 313

Query: 298 CLR 300
           C R
Sbjct: 314 CQR 316


>gi|222149132|ref|YP_002550089.1| D-alanine--D-alanine ligase [Agrobacterium vitis S4]
 gi|221736117|gb|ACM37080.1| D-alanine:D-alanine ligase [Agrobacterium vitis S4]
          Length = 300

 Score =  349 bits (895), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 162/300 (54%), Positives = 220/300 (73%), Gaps = 3/300 (1%)

Query: 4   LMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFG 63
           ++GG SSER VSL+SG  CASALE+ G++V+++DV R +  VL  LKPD+ FN LHG FG
Sbjct: 1   MLGGFSSERPVSLASGAPCASALEEHGYRVTRVDVTRDIASVLHDLKPDVVFNALHGPFG 60

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
           EDG +Q ILE L IPYTHSG+LASAL+MDK ++K V ++ G+PV  +  ++RF + + H 
Sbjct: 61  EDGTIQGILEYLSIPYTHSGVLASALAMDKTQAKIVAAAAGIPVAFARQMSRFEIGNVHP 120

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I PPYV+KP++ GSS G++++K+DQS P  +L SS W +GD +++E YV G ELTCGVM 
Sbjct: 121 IEPPYVVKPVREGSSFGVVIVKEDQSHPPQILGSSEWRYGDTVMVESYVAGRELTCGVMD 180

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
             +L VTE+    + FY Y+ KY++  STHV+PA++   IY+++Q L+  AH AIGCRG+
Sbjct: 181 GKALAVTEVIAKANTFYDYDSKYAAGGSTHVIPAQLSPKIYQKIQDLSVRAHNAIGCRGV 240

Query: 244 SRSDFLFDPLSRK---VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           SRSDF +D    +   + WLE+N QPGMTP S+ PEMAA+AG SF E + WMVEDASC R
Sbjct: 241 SRSDFRYDDRFSEDGDLIWLEVNTQPGMTPTSLVPEMAAHAGISFGEFVSWMVEDASCSR 300


>gi|163760783|ref|ZP_02167863.1| D-alanine--D-alanine ligase [Hoeflea phototrophica DFL-43]
 gi|162282105|gb|EDQ32396.1| D-alanine--D-alanine ligase [Hoeflea phototrophica DFL-43]
          Length = 312

 Score =  349 bits (895), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 164/303 (54%), Positives = 217/303 (71%), Gaps = 3/303 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSER VSL++G  CA ALE AG+KV+++DV   V  VL  LKPD+ FN LHG
Sbjct: 10  VAVLMGGFSSERPVSLATGNPCADALESAGYKVTRVDVGTDVASVLTELKPDVCFNALHG 69

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG +Q +LE L IPYTHSG+ ASAL+MDK  SK V  + G+PV  S ++NR    S
Sbjct: 70  PFGEDGSIQGVLEYLGIPYTHSGVTASALAMDKRLSKIVAKAVGIPVAESKVMNRHDFTS 129

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            H + PPYV+KP+  GSS G+++++++Q+ P  ++ SS W +GD++++E+YV G ELTC 
Sbjct: 130 AHPMQPPYVVKPVNEGSSFGVVIVQENQTHPPQVITSSEWKYGDEVMVERYVPGRELTCT 189

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           +MG+ +L VTEI      FY Y+ KY +  S HV PA+I   +Y++++RLA  AHQAIGC
Sbjct: 190 IMGNVALAVTEIVPQGHSFYDYDSKYVAGGSKHVCPAEISPIVYQKIRRLALKAHQAIGC 249

Query: 241 RGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           RG+SRSDF +D     + +V WLEIN QPGMTP S+ PEMA  AG+SF E + WMVEDAS
Sbjct: 250 RGVSRSDFRYDDRFSENGEVIWLEINTQPGMTPTSLAPEMALQAGHSFEEFVSWMVEDAS 309

Query: 298 CLR 300
           C R
Sbjct: 310 CRR 312


>gi|306843225|ref|ZP_07475836.1| D-alanine--D-alanine ligase [Brucella sp. BO2]
 gi|306286590|gb|EFM58167.1| D-alanine--D-alanine ligase [Brucella sp. BO2]
          Length = 308

 Score =  345 bits (886), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 176/303 (58%), Positives = 229/303 (75%), Gaps = 3/303 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSER VSLSSG ACA+ LE+ G++V++IDVDR+V  +LA LKPD+ FN LHG
Sbjct: 6   VAVLMGGFSSERSVSLSSGAACATTLEECGYRVTRIDVDRNVASILAELKPDVVFNALHG 65

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG +Q +LE L+IPYTHSG+LASAL+MDK R+K V ++ GV V PS L+NRF + S
Sbjct: 66  PFGEDGAIQGVLEYLQIPYTHSGVLASALAMDKGRAKTVAAAAGVVVAPSRLMNRFDIGS 125

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           QH + PPYV+KP++ GSS G++++K+DQ  P  ++ S+ W +GD++++E Y+ G ELTC 
Sbjct: 126 QHPMKPPYVVKPVREGSSFGVVIVKEDQPHPPQVIGSADWRYGDEVMVEGYIAGRELTCA 185

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           VMGD ++DV EI      FY Y+ KY +  STHV PAKI  +IY+++Q +A  AH+AIGC
Sbjct: 186 VMGDRAMDVCEIIPVGYQFYDYDSKYVAGASTHVCPAKILPNIYQKIQTMALTAHRAIGC 245

Query: 241 RGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           RG+SRSDF FD       +V WLEIN QPGMTP S+ P++A  AG SF ELL WMVEDAS
Sbjct: 246 RGVSRSDFRFDDRFSEEGEVVWLEINTQPGMTPTSLVPDIAKAAGISFAELLSWMVEDAS 305

Query: 298 CLR 300
           CLR
Sbjct: 306 CLR 308


>gi|90418191|ref|ZP_01226103.1| D-alanine--D-alanine ligase [Aurantimonas manganoxydans SI85-9A1]
 gi|90337863|gb|EAS51514.1| D-alanine--D-alanine ligase [Aurantimonas manganoxydans SI85-9A1]
          Length = 321

 Score =  345 bits (885), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 164/303 (54%), Positives = 216/303 (71%), Gaps = 3/303 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSER VSL+SGKACA+ALE AG+ V+ +DVDR+V   LA L+PD+AFN LHG
Sbjct: 19  VAVLMGGFSSERPVSLASGKACAAALETAGYTVTTVDVDRNVAETLARLRPDVAFNALHG 78

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG +Q ILE LEIPYTHSG+LASAL+M K R+K V  + GVPV  + L +R     
Sbjct: 79  PFGEDGTIQGILEYLEIPYTHSGVLASALAMHKERAKIVAKAAGVPVAEAKLRHRLDAAE 138

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            H++ PPYVIKP+  GSS G++++++DQ  P   L    W +GD ++IE++V G ELTC 
Sbjct: 139 SHVLPPPYVIKPVAEGSSFGVLIVREDQPHPPQQLYGDDWPYGDIVMIERFVAGRELTCA 198

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           VMGD +L+V EI      FY Y+ KY    S+H++PA +P D+ +++Q  +  AH A+GC
Sbjct: 199 VMGDVALEVCEIVTEGHAFYDYDSKYVPGGSSHIVPADLPKDVARKIQGWSLAAHAALGC 258

Query: 241 RGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           RG+SRSDF +D       +V WLE+N QPGMT  S+ P++AA +G+SF ELL WMVEDAS
Sbjct: 259 RGVSRSDFRYDDRFGPGGEVVWLEVNTQPGMTETSLVPDIAAASGHSFPELLSWMVEDAS 318

Query: 298 CLR 300
           C R
Sbjct: 319 CRR 321


>gi|217979596|ref|YP_002363743.1| D-alanine--D-alanine ligase [Methylocella silvestris BL2]
 gi|254767734|sp|B8ETM9|DDL_METSB RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|217504972|gb|ACK52381.1| D-alanine/D-alanine ligase [Methylocella silvestris BL2]
          Length = 307

 Score =  344 bits (882), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 159/303 (52%), Positives = 215/303 (70%), Gaps = 3/303 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG+S+EREVSL SG ACA ALE  GF+V+ +DVDR +   LA L+PD A N LHG
Sbjct: 5   VAVLMGGLSAEREVSLRSGAACAKALEAEGFRVTTLDVDRDIAQKLAALRPDAALNALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG++Q +LE+L IPYTHSG+LASAL+M K R+K V+ + GVPV   + + RF    
Sbjct: 65  RYGEDGVIQGVLEMLAIPYTHSGVLASALAMQKDRAKDVLRAAGVPVAEGVTIGRFEAAK 124

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            H+++PPYV+KPL  GSS G+I+++ DQ+ P   L    W +GD +L+E++V G ELTC 
Sbjct: 125 AHVMTPPYVVKPLGEGSSFGVIIVRADQTHPPQELTRDDWAYGDLVLVERFVAGRELTCA 184

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V+GD +  VTEI      +Y Y+ KY +  S H+LPA +   +Y+ VQ LA +AH+A+GC
Sbjct: 185 VIGDKAYGVTEIRAADGGWYDYDAKYKAGGSIHILPANLKEFVYQNVQELALVAHRALGC 244

Query: 241 RGISRSDFLFDPLSR---KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           RG+SR+DF +D   +   ++  LE+N QPGMT  S+ PE+AAYAG SF EL+ WMVEDAS
Sbjct: 245 RGVSRTDFRYDDTPQGTGELVVLEVNSQPGMTETSLVPEIAAYAGISFGELVRWMVEDAS 304

Query: 298 CLR 300
           C R
Sbjct: 305 CDR 307


>gi|182677688|ref|YP_001831834.1| D-alanine--D-alanine ligase [Beijerinckia indica subsp. indica ATCC
           9039]
 gi|229463732|sp|B2IGG3|DDL_BEII9 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|182633571|gb|ACB94345.1| D-alanine--D-alanine ligase [Beijerinckia indica subsp. indica ATCC
           9039]
          Length = 307

 Score =  343 bits (880), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 157/303 (51%), Positives = 219/303 (72%), Gaps = 3/303 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG+S+EREVSL SG ACA AL   GF+V+++DVDR +G  LA L+PD+AFN LHG
Sbjct: 5   VAVLMGGLSAEREVSLCSGAACAEALRGEGFEVTEVDVDRQIGERLAALRPDVAFNALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG++Q +LE+L IPYTHSG+LASAL+M K R++ V+++ GVP+   + V+R     
Sbjct: 65  RFGEDGIIQGVLEMLAIPYTHSGVLASALAMRKDRARDVLAAAGVPIAKGVTVDRLEAAQ 124

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +H++ PPYVIKPL  GSS G+ ++++DQ+ P   L  S W  G+++L+E Y+ G ELTC 
Sbjct: 125 RHILPPPYVIKPLGEGSSFGVFIVREDQAYPPQELTRSDWAFGNRVLVESYIGGRELTCA 184

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V+G+ + DV EI      +Y Y+ KY    S H+LPA++  +IY+ VQ L+  AH+A+GC
Sbjct: 185 VIGEKAHDVIEIKAVGGGWYDYDAKYRKGGSIHILPAELKRNIYQNVQLLSLKAHKALGC 244

Query: 241 RGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           RG+SR+DF +D     + ++  LE+N QPGMT  S+ PE+AAYAG SF EL+ WMV+DAS
Sbjct: 245 RGVSRTDFRYDDRPEGTGELIVLEVNTQPGMTETSLLPEIAAYAGLSFGELVRWMVDDAS 304

Query: 298 CLR 300
           C R
Sbjct: 305 CDR 307


>gi|306844327|ref|ZP_07476919.1| D-alanine--D-alanine ligase [Brucella sp. BO1]
 gi|306275399|gb|EFM57140.1| D-alanine--D-alanine ligase [Brucella sp. BO1]
          Length = 308

 Score =  342 bits (877), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 177/303 (58%), Positives = 230/303 (75%), Gaps = 3/303 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSER VSLSSG ACA+ LE+ G++V++IDVDR+V  VLA LKPD+ FN LHG
Sbjct: 6   VAVLMGGFSSERSVSLSSGAACATTLEECGYRVTRIDVDRNVASVLAELKPDVVFNALHG 65

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG +Q +LE L+IPYTHSG+LASAL+MDK R+K+V ++ GV V PS L+NRF + S
Sbjct: 66  PFGEDGAIQGVLEYLQIPYTHSGVLASALAMDKDRAKKVAAAAGVVVAPSRLMNRFDIGS 125

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           QH + PPYV+KP++ GSS G++++K+DQ  P  ++ S+ W +GD++++E Y+ G ELTC 
Sbjct: 126 QHPMKPPYVVKPVREGSSFGVVIVKEDQPHPPQVIGSADWKYGDEVMVEGYIAGRELTCA 185

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           VMGD ++DV EI      FY Y+ KY +  STHV PAKI  +IY+++Q +A  AH+AIGC
Sbjct: 186 VMGDRAMDVCEIIPVGYQFYDYDSKYVAGASTHVCPAKILPNIYQKIQTMALTAHRAIGC 245

Query: 241 RGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           RG+SRSDF FD       +V WLEIN QPGMTP S+ P++A  AG SF ELL WMVEDAS
Sbjct: 246 RGVSRSDFRFDDRFSEEGEVVWLEINTQPGMTPTSLVPDIAKAAGISFAELLSWMVEDAS 305

Query: 298 CLR 300
           CLR
Sbjct: 306 CLR 308


>gi|307944891|ref|ZP_07660228.1| D-alanine--D-alanine ligase [Roseibium sp. TrichSKD4]
 gi|307771815|gb|EFO31039.1| D-alanine--D-alanine ligase [Roseibium sp. TrichSKD4]
          Length = 309

 Score =  342 bits (876), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 159/303 (52%), Positives = 218/303 (71%), Gaps = 3/303 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG  +ER VSLSSG+ CA+ALE  G+KV+++DVDR +  VLA L+PD+AFN LHG
Sbjct: 7   VAVLMGGWVNERPVSLSSGEGCAAALEKGGYKVTRVDVDRDIASVLADLRPDVAFNALHG 66

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG +Q ILE+LEIPYTHSG++ASAL+M+K ++K V++  G+PV   ++VNRF +  
Sbjct: 67  PFGEDGCIQGILEILEIPYTHSGVMASALAMNKDKAKAVMAEAGIPVTEHLIVNRFHVGH 126

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            H + PPYV+KP+  GSS G+I++K+DQ  P   L    W + D L+ E+++ G ELTC 
Sbjct: 127 DHPMKPPYVLKPINEGSSFGVIIVKEDQPHPPQELTREDWPYPDDLMCEKFIGGRELTCA 186

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           VMG+  L V E+    + FY ++ KY+   S H+LPAKI   +Y+E+Q+L+  AHQA+GC
Sbjct: 187 VMGEKPLGVIEVVPTGNSFYDFDAKYAEGGSKHILPAKISPFVYQEIQKLSVEAHQALGC 246

Query: 241 RGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           RG+SR+DF FD     S  +  LE+N QPGMTP S+ PEMA + G S+ EL+ WMVE+AS
Sbjct: 247 RGVSRADFRFDEREDGSGNLVCLEVNTQPGMTPTSLVPEMAEHEGMSYVELVSWMVEEAS 306

Query: 298 CLR 300
           C R
Sbjct: 307 CCR 309


>gi|118590889|ref|ZP_01548289.1| D-alanylalanine synthetase [Stappia aggregata IAM 12614]
 gi|118436411|gb|EAV43052.1| D-alanylalanine synthetase [Stappia aggregata IAM 12614]
          Length = 308

 Score =  341 bits (874), Expect = 9e-92,   Method: Compositional matrix adjust.
 Identities = 158/303 (52%), Positives = 220/303 (72%), Gaps = 3/303 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG  +ER VSL+SGK CA ALE+AG++V+++DVDR++  VL  LKPD+ FN LHG
Sbjct: 6   VAVLMGGWVNERPVSLASGKGCADALEEAGYRVTRVDVDRNISAVLKDLKPDVVFNALHG 65

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG VQ ILE+L IPYTHSG+LAS+L+M+K+++K V+++ G+PV   ++VNR  +  
Sbjct: 66  PFGEDGCVQGILEVLNIPYTHSGVLASSLAMNKVKAKAVMNAAGIPVTEHLVVNRREITR 125

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +H + PPYV+KP+  GSS G++++K+DQ  P   L    W + D+L+ E+++ G ELTC 
Sbjct: 126 EHPMKPPYVLKPINEGSSFGVLIVKEDQEFPPQELGREDWPYPDELMCEKFIGGRELTCA 185

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           VM D +L V +I      FY Y+ KY+   S H+LPAKI   +Y+ ++ LA  AHQA+GC
Sbjct: 186 VMDDTALGVIDIVPLGHGFYDYDAKYAQGGSKHILPAKISPIVYQTIETLAVKAHQALGC 245

Query: 241 RGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           RG+SR+DF FD     S ++  LE+N QPGMTP S+ PEMAA+ G SF++L+ WMVEDAS
Sbjct: 246 RGVSRADFRFDEREDGSGELICLEVNTQPGMTPTSLVPEMAAHKGMSFKDLVSWMVEDAS 305

Query: 298 CLR 300
           C R
Sbjct: 306 CCR 308


>gi|220927177|ref|YP_002502479.1| D-alanine--D-alanine ligase [Methylobacterium nodulans ORS 2060]
 gi|219951784|gb|ACL62176.1| D-alanine/D-alanine ligase [Methylobacterium nodulans ORS 2060]
          Length = 307

 Score =  340 bits (872), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 163/303 (53%), Positives = 219/303 (72%), Gaps = 3/303 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSEREVSL+SG+ACA ALE  GF+++ IDV R++  VLA ++PD+AFN LHG
Sbjct: 5   VAVLMGGWSSEREVSLNSGRACARALEAQGFRITPIDVQRNLAAVLAEVQPDIAFNALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG VQ +LEL+ IPYTHSG+LASAL+M K R+K V+ S GVPV    +VNRF   S
Sbjct: 65  PCGEDGTVQGLLELMAIPYTHSGVLASALAMHKDRAKVVMRSAGVPVPEGRIVNRFEAAS 124

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +H++ PPYV+KP+  GSS+G++++++ +S P   L    W++GD++L E Y+ G ELTC 
Sbjct: 125 RHVLPPPYVLKPVAEGSSVGVVIVREGRSHPPQELAREDWSYGDEVLAETYIPGRELTCA 184

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           VMGD +L V +I     ++Y Y+ KY+   S HVLPA+I   IY+ V+ LA  AHQA+GC
Sbjct: 185 VMGDTALGVIDIRPATGEWYDYDAKYAKGGSVHVLPAEIKPKIYQRVRELALTAHQALGC 244

Query: 241 RGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           RG+SR+D  +D     +  +  LE+N QPGMT  S+ PE+AA+AGYSF EL+ WMVEDAS
Sbjct: 245 RGVSRADLRYDDTPGGTGALVVLEVNTQPGMTETSLVPELAAHAGYSFGELVRWMVEDAS 304

Query: 298 CLR 300
             R
Sbjct: 305 LNR 307


>gi|254719459|ref|ZP_05181270.1| D-alanine--D-alanine ligase [Brucella sp. 83/13]
 gi|265984465|ref|ZP_06097200.1| D-alanine-D-alanine ligase B [Brucella sp. 83/13]
 gi|306839238|ref|ZP_07472055.1| D-alanine--D-alanine ligase [Brucella sp. NF 2653]
 gi|264663057|gb|EEZ33318.1| D-alanine-D-alanine ligase B [Brucella sp. 83/13]
 gi|306405785|gb|EFM62047.1| D-alanine--D-alanine ligase [Brucella sp. NF 2653]
          Length = 308

 Score =  340 bits (871), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 175/303 (57%), Positives = 230/303 (75%), Gaps = 3/303 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSER VSLSSG ACA+ LE+ G++V++IDVDR+V  +LA LKPD+ FN LHG
Sbjct: 6   VAVLMGGFSSERSVSLSSGAACATTLEECGYRVTRIDVDRNVASILAELKPDVVFNALHG 65

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FG+DG +Q +LE L+IPYTHSG+LASAL+MDK R+K+V ++ GV V PS L+NRF + S
Sbjct: 66  PFGKDGAIQGVLEYLQIPYTHSGVLASALAMDKDRAKKVAAAAGVVVAPSRLMNRFDIGS 125

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           QH + PPYV+KP++ GSS G++++K+DQ  P  ++ S+ W +GD++++E Y+ G ELTC 
Sbjct: 126 QHPMKPPYVVKPVREGSSFGVVIVKEDQPHPPQVIGSADWKYGDEVMVEGYIAGRELTCA 185

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           VMGD ++DV EI      FY Y+ KY +  STHV PAKI  +IY+++Q +A  AH+AIGC
Sbjct: 186 VMGDRAMDVCEIIPVGYQFYDYDSKYVAGASTHVCPAKILPNIYQKIQTMALTAHRAIGC 245

Query: 241 RGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           RG+SRSDF FD       +V WLEIN QPGMTP S+ P++A  AG SF ELL WMVEDAS
Sbjct: 246 RGVSRSDFRFDDRFSEEGEVVWLEINTQPGMTPTSLVPDIAKAAGISFAELLSWMVEDAS 305

Query: 298 CLR 300
           CLR
Sbjct: 306 CLR 308


>gi|17986865|ref|NP_539499.1| D-alanine--D-alanine ligase [Brucella melitensis bv. 1 str. 16M]
 gi|39931178|sp|Q8YI63|DDLB_BRUME RecName: Full=D-alanine--D-alanine ligase B; AltName:
           Full=D-Ala-D-Ala ligase B; AltName: Full=D-alanylalanine
           synthetase B
 gi|17982503|gb|AAL51763.1| d-alanine--d-alanine ligase [Brucella melitensis bv. 1 str. 16M]
          Length = 315

 Score =  339 bits (870), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 175/303 (57%), Positives = 229/303 (75%), Gaps = 3/303 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSER VSLSSG ACA+ LE+ G++V++IDVDR+V  +L  LKPD+ FN LHG
Sbjct: 13  VAVLMGGFSSERSVSLSSGVACATTLEECGYRVTRIDVDRNVASILVELKPDVVFNALHG 72

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG +Q +LE L+IPYTHSG+LASAL+MDK R+K+V ++ GV V PS L+NRF + S
Sbjct: 73  PFGEDGAIQGVLEYLQIPYTHSGVLASALAMDKDRAKKVAAAAGVVVAPSRLMNRFDIGS 132

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           QH + PPYV+KP++ GSS G++++K+DQ  P  ++ S+ W +GD++++E Y+ G ELTC 
Sbjct: 133 QHPMKPPYVVKPVREGSSFGVVIVKEDQPHPPQVIGSADWKYGDEVMVEGYIAGRELTCA 192

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           VMGD ++DV EI      FY Y+ KY +  STHV PAKI  +IY+++Q +A  AH+AIGC
Sbjct: 193 VMGDRAMDVCEIMPVGYQFYDYDSKYVAGASTHVCPAKILPNIYQKIQTMALTAHRAIGC 252

Query: 241 RGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           RG+SRSDF FD       +V WLEIN QPGMTP S+ P++A  AG SF ELL WMVEDAS
Sbjct: 253 RGVSRSDFRFDDRFSEEGEVVWLEINTQPGMTPTSLVPDIAKAAGISFAELLSWMVEDAS 312

Query: 298 CLR 300
           CLR
Sbjct: 313 CLR 315


>gi|225852910|ref|YP_002733143.1| D-alanine--D-alanine ligase [Brucella melitensis ATCC 23457]
 gi|256045058|ref|ZP_05447959.1| D-alanine--D-alanine ligase [Brucella melitensis bv. 1 str. Rev.1]
 gi|256113981|ref|ZP_05454764.1| D-alanine--D-alanine ligase [Brucella melitensis bv. 3 str. Ether]
 gi|256263609|ref|ZP_05466141.1| D-alanine-D-alanine ligase B [Brucella melitensis bv. 2 str. 63/9]
 gi|260565343|ref|ZP_05835827.1| D-alanine-D-alanine ligase B [Brucella melitensis bv. 1 str. 16M]
 gi|265991485|ref|ZP_06104042.1| D-alanine-D-alanine ligase B [Brucella melitensis bv. 1 str. Rev.1]
 gi|265995323|ref|ZP_06107880.1| D-alanine-D-alanine ligase B [Brucella melitensis bv. 3 str. Ether]
 gi|225641275|gb|ACO01189.1| D-alanine--D-alanine ligase [Brucella melitensis ATCC 23457]
 gi|260151411|gb|EEW86505.1| D-alanine-D-alanine ligase B [Brucella melitensis bv. 1 str. 16M]
 gi|262766436|gb|EEZ12225.1| D-alanine-D-alanine ligase B [Brucella melitensis bv. 3 str. Ether]
 gi|263002269|gb|EEZ14844.1| D-alanine-D-alanine ligase B [Brucella melitensis bv. 1 str. Rev.1]
 gi|263093660|gb|EEZ17665.1| D-alanine-D-alanine ligase B [Brucella melitensis bv. 2 str. 63/9]
 gi|326409452|gb|ADZ66517.1| D-alanine--D-alanine ligase [Brucella melitensis M28]
 gi|326539158|gb|ADZ87373.1| D-alanine--D-alanine ligase [Brucella melitensis M5-90]
          Length = 308

 Score =  339 bits (870), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 175/303 (57%), Positives = 229/303 (75%), Gaps = 3/303 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSER VSLSSG ACA+ LE+ G++V++IDVDR+V  +L  LKPD+ FN LHG
Sbjct: 6   VAVLMGGFSSERSVSLSSGVACATTLEECGYRVTRIDVDRNVASILVELKPDVVFNALHG 65

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG +Q +LE L+IPYTHSG+LASAL+MDK R+K+V ++ GV V PS L+NRF + S
Sbjct: 66  PFGEDGAIQGVLEYLQIPYTHSGVLASALAMDKDRAKKVAAAAGVVVAPSRLMNRFDIGS 125

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           QH + PPYV+KP++ GSS G++++K+DQ  P  ++ S+ W +GD++++E Y+ G ELTC 
Sbjct: 126 QHPMKPPYVVKPVREGSSFGVVIVKEDQPHPPQVIGSADWKYGDEVMVEGYIAGRELTCA 185

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           VMGD ++DV EI      FY Y+ KY +  STHV PAKI  +IY+++Q +A  AH+AIGC
Sbjct: 186 VMGDRAMDVCEIMPVGYQFYDYDSKYVAGASTHVCPAKILPNIYQKIQTMALTAHRAIGC 245

Query: 241 RGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           RG+SRSDF FD       +V WLEIN QPGMTP S+ P++A  AG SF ELL WMVEDAS
Sbjct: 246 RGVSRSDFRFDDRFSEEGEVVWLEINTQPGMTPTSLVPDIAKAAGISFAELLSWMVEDAS 305

Query: 298 CLR 300
           CLR
Sbjct: 306 CLR 308


>gi|148559516|ref|YP_001259321.1| D-alanine--D-alanine ligase [Brucella ovis ATCC 25840]
 gi|148370773|gb|ABQ60752.1| D-alanine--D-alanine ligase B [Brucella ovis ATCC 25840]
          Length = 308

 Score =  339 bits (870), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 176/303 (58%), Positives = 230/303 (75%), Gaps = 3/303 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSER VSLSSG ACA+ LE+ G++V++IDVDR+V  +L  LKPD+ FN LHG
Sbjct: 6   VAVLMGGFSSERSVSLSSGVACATTLEECGYRVTRIDVDRNVASILVELKPDVVFNALHG 65

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG +Q +LE L+IPYTHSG+LASAL+MDK R+K+VV++ GV V PS L+NRF + S
Sbjct: 66  PFGEDGAIQGVLEYLQIPYTHSGVLASALAMDKDRAKKVVAAAGVVVAPSRLMNRFDIGS 125

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           QH + PPYV+KP++ GSS G++++K+DQ  P  ++ S+ W +GD++++E Y+ G ELTC 
Sbjct: 126 QHPMKPPYVVKPVREGSSFGVVIVKEDQPHPPQVIGSADWKYGDEVMVEGYIAGRELTCA 185

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           VMGD ++DV EI      FY Y+ KY +  STHV PAKI  +IY+++Q +A  AH+AIGC
Sbjct: 186 VMGDRAMDVCEIIPVSYQFYDYDSKYVAGASTHVCPAKILPNIYQKIQTMALTAHRAIGC 245

Query: 241 RGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           RG+SRSDF FD       +V WLEIN QPGMTP S+ P++A  AG SF ELL WMVEDAS
Sbjct: 246 RGVSRSDFRFDDRFSEEGEVVWLEINTQPGMTPTSLVPDIAKAAGISFAELLSWMVEDAS 305

Query: 298 CLR 300
           CLR
Sbjct: 306 CLR 308


>gi|225627879|ref|ZP_03785915.1| D-alanine--D-alanine ligase [Brucella ceti str. Cudo]
 gi|294852754|ref|ZP_06793427.1| D-alanine-D-alanine ligase B [Brucella sp. NVSL 07-0026]
 gi|225617042|gb|EEH14088.1| D-alanine--D-alanine ligase [Brucella ceti str. Cudo]
 gi|294821343|gb|EFG38342.1| D-alanine-D-alanine ligase B [Brucella sp. NVSL 07-0026]
          Length = 315

 Score =  339 bits (870), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 175/303 (57%), Positives = 229/303 (75%), Gaps = 3/303 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSER VSLSSG ACA+ LE+ G++V++IDVDR+V  +L  LKPD+ FN LHG
Sbjct: 13  VAVLMGGFSSERSVSLSSGVACATTLEECGYRVTRIDVDRNVASILVELKPDVVFNALHG 72

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG +Q +LE L+IPYTHSG+LASAL+MDK R+K+V ++ GV V PS L+NRF + S
Sbjct: 73  PFGEDGAIQGVLEYLQIPYTHSGVLASALAMDKDRAKKVAAAAGVVVAPSRLMNRFDIGS 132

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           QH + PPYV+KP++ GSS G++++K+DQ  P  ++ S+ W +GD++++E Y+ G ELTC 
Sbjct: 133 QHPMKPPYVVKPVREGSSFGVVIVKEDQPHPPQVIGSADWKYGDEVMVEGYIAGRELTCA 192

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           VMGD ++DV EI      FY Y+ KY +  STHV PAKI  +IY+++Q +A  AH+AIGC
Sbjct: 193 VMGDRAMDVCEIIPVGYQFYDYDSKYVAGASTHVCPAKILPNIYQKIQTMALTAHRAIGC 252

Query: 241 RGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           RG+SRSDF FD       +V WLEIN QPGMTP S+ P++A  AG SF ELL WMVEDAS
Sbjct: 253 RGVSRSDFRFDDRFSEEGEVVWLEINTQPGMTPTSLVPDIAKAAGISFAELLSWMVEDAS 312

Query: 298 CLR 300
           CLR
Sbjct: 313 CLR 315


>gi|254702149|ref|ZP_05163977.1| D-alanine--D-alanine ligase [Brucella suis bv. 5 str. 513]
 gi|254708100|ref|ZP_05169928.1| D-alanine--D-alanine ligase [Brucella pinnipedialis M163/99/10]
 gi|254710469|ref|ZP_05172280.1| D-alanine--D-alanine ligase [Brucella pinnipedialis B2/94]
 gi|254714462|ref|ZP_05176273.1| D-alanine--D-alanine ligase [Brucella ceti M644/93/1]
 gi|254717360|ref|ZP_05179171.1| D-alanine--D-alanine ligase [Brucella ceti M13/05/1]
 gi|256031963|ref|ZP_05445577.1| D-alanine--D-alanine ligase [Brucella pinnipedialis M292/94/1]
 gi|256061485|ref|ZP_05451629.1| D-alanine--D-alanine ligase [Brucella neotomae 5K33]
 gi|256160162|ref|ZP_05457856.1| D-alanine--D-alanine ligase [Brucella ceti M490/95/1]
 gi|256255368|ref|ZP_05460904.1| D-alanine--D-alanine ligase [Brucella ceti B1/94]
 gi|256369844|ref|YP_003107355.1| D-alanylalanine synthetase [Brucella microti CCM 4915]
 gi|260169100|ref|ZP_05755911.1| D-alanine--D-alanine ligase [Brucella sp. F5/99]
 gi|261219191|ref|ZP_05933472.1| D-alanine-D-alanine ligase B [Brucella ceti M13/05/1]
 gi|261222570|ref|ZP_05936851.1| D-alanine-D-alanine ligase B [Brucella ceti B1/94]
 gi|261315603|ref|ZP_05954800.1| D-alanine-D-alanine ligase B [Brucella pinnipedialis M163/99/10]
 gi|261318041|ref|ZP_05957238.1| D-alanine-D-alanine ligase B [Brucella pinnipedialis B2/94]
 gi|261322252|ref|ZP_05961449.1| D-alanine-D-alanine ligase B [Brucella ceti M644/93/1]
 gi|261325492|ref|ZP_05964689.1| D-alanine-D-alanine ligase B [Brucella neotomae 5K33]
 gi|261752719|ref|ZP_05996428.1| D-alanine-D-alanine ligase B [Brucella suis bv. 5 str. 513]
 gi|261758607|ref|ZP_06002316.1| D-alanine-D-alanine ligase B [Brucella sp. F5/99]
 gi|265989072|ref|ZP_06101629.1| D-alanine-D-alanine ligase B [Brucella pinnipedialis M292/94/1]
 gi|265998535|ref|ZP_06111092.1| D-alanine-D-alanine ligase B [Brucella ceti M490/95/1]
 gi|256000007|gb|ACU48406.1| D-alanylalanine synthetase [Brucella microti CCM 4915]
 gi|260921154|gb|EEX87807.1| D-alanine-D-alanine ligase B [Brucella ceti B1/94]
 gi|260924280|gb|EEX90848.1| D-alanine-D-alanine ligase B [Brucella ceti M13/05/1]
 gi|261294942|gb|EEX98438.1| D-alanine-D-alanine ligase B [Brucella ceti M644/93/1]
 gi|261297264|gb|EEY00761.1| D-alanine-D-alanine ligase B [Brucella pinnipedialis B2/94]
 gi|261301472|gb|EEY04969.1| D-alanine-D-alanine ligase B [Brucella neotomae 5K33]
 gi|261304629|gb|EEY08126.1| D-alanine-D-alanine ligase B [Brucella pinnipedialis M163/99/10]
 gi|261738591|gb|EEY26587.1| D-alanine-D-alanine ligase B [Brucella sp. F5/99]
 gi|261742472|gb|EEY30398.1| D-alanine-D-alanine ligase B [Brucella suis bv. 5 str. 513]
 gi|262553159|gb|EEZ08993.1| D-alanine-D-alanine ligase B [Brucella ceti M490/95/1]
 gi|264661269|gb|EEZ31530.1| D-alanine-D-alanine ligase B [Brucella pinnipedialis M292/94/1]
          Length = 308

 Score =  339 bits (870), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 175/303 (57%), Positives = 229/303 (75%), Gaps = 3/303 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSER VSLSSG ACA+ LE+ G++V++IDVDR+V  +L  LKPD+ FN LHG
Sbjct: 6   VAVLMGGFSSERSVSLSSGVACATTLEECGYRVTRIDVDRNVASILVELKPDVVFNALHG 65

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG +Q +LE L+IPYTHSG+LASAL+MDK R+K+V ++ GV V PS L+NRF + S
Sbjct: 66  PFGEDGAIQGVLEYLQIPYTHSGVLASALAMDKDRAKKVAAAAGVVVAPSRLMNRFDIGS 125

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           QH + PPYV+KP++ GSS G++++K+DQ  P  ++ S+ W +GD++++E Y+ G ELTC 
Sbjct: 126 QHPMKPPYVVKPVREGSSFGVVIVKEDQPHPPQVIGSADWKYGDEVMVEGYIAGRELTCA 185

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           VMGD ++DV EI      FY Y+ KY +  STHV PAKI  +IY+++Q +A  AH+AIGC
Sbjct: 186 VMGDRAMDVCEIIPVGYQFYDYDSKYVAGASTHVCPAKILPNIYQKIQTMALTAHRAIGC 245

Query: 241 RGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           RG+SRSDF FD       +V WLEIN QPGMTP S+ P++A  AG SF ELL WMVEDAS
Sbjct: 246 RGVSRSDFRFDDRFSEEGEVVWLEINTQPGMTPTSLVPDIAKAAGISFAELLSWMVEDAS 305

Query: 298 CLR 300
           CLR
Sbjct: 306 CLR 308


>gi|296448759|ref|ZP_06890613.1| D-alanine/D-alanine ligase [Methylosinus trichosporium OB3b]
 gi|296253733|gb|EFH00906.1| D-alanine/D-alanine ligase [Methylosinus trichosporium OB3b]
          Length = 311

 Score =  339 bits (869), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 164/303 (54%), Positives = 215/303 (70%), Gaps = 3/303 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG+SSER +SL SG ACA ALE  GF+V+++DV R V  VLA LKPD+AFN LHG
Sbjct: 9   VAVLMGGLSSERPISLRSGAACAEALEGEGFRVTRVDVGRDVAEVLAALKPDVAFNALHG 68

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG +Q ILE L IPYTHSG+LAS+L+M K  +K V+++ GVPV    +++R     
Sbjct: 69  RFGEDGCIQGILETLHIPYTHSGVLASSLAMRKDVAKSVMAAAGVPVPKGRVLSRQEAAK 128

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            H + PPYV+KP+  GSS G+ ++K+ +S P   L ++ W HGD +L E +VDG ELTC 
Sbjct: 129 AHALPPPYVLKPVSEGSSFGVFIVKEGRSHPPQELAAADWKHGDLMLAENFVDGRELTCA 188

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           VMGD +L V EI     +FY ++ KY+   S HVLPA +  +IY+EVQ+LA  AH+A+GC
Sbjct: 189 VMGDRALGVIEILPVSEEFYGFDAKYAKGGSKHVLPANLKQNIYQEVQQLALEAHRALGC 248

Query: 241 RGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           RG+SR+DF +D     +  +  LE+N QPGMT  S+ PEMAA+AGYSF  L+ WMVEDAS
Sbjct: 249 RGVSRADFRYDDSPGGTGDLVVLEVNTQPGMTETSLVPEMAAHAGYSFGGLVRWMVEDAS 308

Query: 298 CLR 300
           C R
Sbjct: 309 CDR 311


>gi|23502299|ref|NP_698426.1| D-alanine--D-alanine ligase [Brucella suis 1330]
 gi|163843684|ref|YP_001628088.1| D-alanine--D-alanine ligase [Brucella suis ATCC 23445]
 gi|254704685|ref|ZP_05166513.1| D-alanine--D-alanine ligase [Brucella suis bv. 3 str. 686]
 gi|261755379|ref|ZP_05999088.1| D-alanine-D-alanine ligase B [Brucella suis bv. 3 str. 686]
 gi|39931155|sp|Q8FZP5|DDLB_BRUSU RecName: Full=D-alanine--D-alanine ligase B; AltName:
           Full=D-Ala-D-Ala ligase B; AltName: Full=D-alanylalanine
           synthetase B
 gi|23348275|gb|AAN30341.1| D-alanine--D-alanine ligase B [Brucella suis 1330]
 gi|163674407|gb|ABY38518.1| D-alanine--D-alanine ligase [Brucella suis ATCC 23445]
 gi|261745132|gb|EEY33058.1| D-alanine-D-alanine ligase B [Brucella suis bv. 3 str. 686]
          Length = 308

 Score =  338 bits (868), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 175/303 (57%), Positives = 229/303 (75%), Gaps = 3/303 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSER VSLSSG ACA+ LE+ G++V++IDVDR+V  +L  LKPD+ FN LHG
Sbjct: 6   VAVLMGGFSSERSVSLSSGVACATTLEECGYRVTRIDVDRNVASILVELKPDVVFNALHG 65

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG +Q +LE L+IPYTHSG+LASAL+MDK R+K+V ++ GV V PS L+NRF + S
Sbjct: 66  PFGEDGAIQGVLEYLQIPYTHSGVLASALAMDKDRAKKVAAAAGVVVAPSRLMNRFDIGS 125

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           QH + PPYV+KP++ GSS G++++K+DQ  P  ++ S+ W +GD++++E Y+ G ELTC 
Sbjct: 126 QHPMKPPYVVKPVREGSSFGVVIVKEDQPHPPQVIGSADWKYGDEVMVEGYIAGRELTCA 185

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           VMGD ++DV EI      FY Y+ KY +  STHV PAKI  +IY+++Q +A  AH+AIGC
Sbjct: 186 VMGDRAMDVCEIIPVGYQFYDYDSKYVAGASTHVSPAKILPNIYQKIQTMALTAHRAIGC 245

Query: 241 RGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           RG+SRSDF FD       +V WLEIN QPGMTP S+ P++A  AG SF ELL WMVEDAS
Sbjct: 246 RGVSRSDFRFDDRFSEEGEVVWLEINTQPGMTPTSLVPDIAKAAGISFAELLSWMVEDAS 305

Query: 298 CLR 300
           CLR
Sbjct: 306 CLR 308


>gi|161619376|ref|YP_001593263.1| D-alanine--D-alanine ligase [Brucella canis ATCC 23365]
 gi|260566067|ref|ZP_05836537.1| D-alanine-D-alanine ligase B [Brucella suis bv. 4 str. 40]
 gi|161336187|gb|ABX62492.1| D-alanine--D-alanine ligase [Brucella canis ATCC 23365]
 gi|260155585|gb|EEW90665.1| D-alanine-D-alanine ligase B [Brucella suis bv. 4 str. 40]
          Length = 308

 Score =  338 bits (867), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 175/303 (57%), Positives = 229/303 (75%), Gaps = 3/303 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSER VSLSSG ACA+ LE+ G++V++IDVDR+V  +L  LKPD+ FN LHG
Sbjct: 6   VAVLMGGFSSERSVSLSSGVACATTLEECGYRVTRIDVDRNVASILVELKPDVVFNALHG 65

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG +Q +LE L+IPYTHSG+LASAL+MDK R+K+V ++ GV V PS L+NRF + S
Sbjct: 66  PFGEDGAIQGVLEYLQIPYTHSGVLASALAMDKDRAKKVAAAAGVVVAPSRLMNRFDIGS 125

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           QH + PPYV+KP++ GSS G++++K+DQ  P  ++ S+ W +GD++++E Y+ G ELTC 
Sbjct: 126 QHPMKPPYVVKPVREGSSFGVVIVKEDQPHPPQVIGSADWKYGDEVMVEGYIAGRELTCA 185

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           VMGD ++DV EI      FY Y+ KY +  STHV PAKI  +IY+++Q +A  AH+AIGC
Sbjct: 186 VMGDRAMDVCEIIPVGYQFYDYDSKYVAGASTHVSPAKILPNIYQKIQTMALTAHRAIGC 245

Query: 241 RGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           RG+SRSDF FD       +V WLEIN QPGMTP S+ P++A  AG SF ELL WMVEDAS
Sbjct: 246 RGVSRSDFRFDDRFSEEGEVVWLEINAQPGMTPTSLVPDIAKAAGISFAELLSWMVEDAS 305

Query: 298 CLR 300
           CLR
Sbjct: 306 CLR 308


>gi|62290321|ref|YP_222114.1| D-alanine--D-alanine ligase [Brucella abortus bv. 1 str. 9-941]
 gi|82700245|ref|YP_414819.1| D-alanine--D-alanine ligase [Brucella melitensis biovar Abortus
           2308]
 gi|189024554|ref|YP_001935322.1| D-alanine--D-alanine ligase [Brucella abortus S19]
 gi|254689622|ref|ZP_05152876.1| D-alanine--D-alanine ligase [Brucella abortus bv. 6 str. 870]
 gi|254694112|ref|ZP_05155940.1| D-alanine--D-alanine ligase [Brucella abortus bv. 3 str. Tulya]
 gi|254697764|ref|ZP_05159592.1| D-alanine--D-alanine ligase [Brucella abortus bv. 2 str. 86/8/59]
 gi|254730653|ref|ZP_05189231.1| D-alanine--D-alanine ligase [Brucella abortus bv. 4 str. 292]
 gi|256257872|ref|ZP_05463408.1| D-alanine--D-alanine ligase [Brucella abortus bv. 9 str. C68]
 gi|260546863|ref|ZP_05822602.1| D-alanine-D-alanine ligase/VANA/B/C [Brucella abortus NCTC 8038]
 gi|260755150|ref|ZP_05867498.1| D-Ala-D-Ala ligase B [Brucella abortus bv. 6 str. 870]
 gi|260758369|ref|ZP_05870717.1| D-Ala-D-Ala ligase B [Brucella abortus bv. 4 str. 292]
 gi|260762195|ref|ZP_05874538.1| D-Ala-D-Ala ligase B [Brucella abortus bv. 2 str. 86/8/59]
 gi|260884163|ref|ZP_05895777.1| D-alanine-D-alanine ligase B [Brucella abortus bv. 9 str. C68]
 gi|261214412|ref|ZP_05928693.1| D-Ala-D-Ala ligase B [Brucella abortus bv. 3 str. Tulya]
 gi|62196453|gb|AAX74753.1| DdlB, D-alanine--D-alanine ligase B [Brucella abortus bv. 1 str.
           9-941]
 gi|82616346|emb|CAJ11403.1| D-alanine--D-alanine ligase/VANA/B/C:D-alanine--D-alanine ligase
           [Brucella melitensis biovar Abortus 2308]
 gi|189020126|gb|ACD72848.1| D-alanine--D-alanine ligase/VANA/B/C [Brucella abortus S19]
 gi|260095913|gb|EEW79790.1| D-alanine-D-alanine ligase/VANA/B/C [Brucella abortus NCTC 8038]
 gi|260668687|gb|EEX55627.1| D-Ala-D-Ala ligase B [Brucella abortus bv. 4 str. 292]
 gi|260672627|gb|EEX59448.1| D-Ala-D-Ala ligase B [Brucella abortus bv. 2 str. 86/8/59]
 gi|260675258|gb|EEX62079.1| D-Ala-D-Ala ligase B [Brucella abortus bv. 6 str. 870]
 gi|260873691|gb|EEX80760.1| D-alanine-D-alanine ligase B [Brucella abortus bv. 9 str. C68]
 gi|260916019|gb|EEX82880.1| D-Ala-D-Ala ligase B [Brucella abortus bv. 3 str. Tulya]
          Length = 308

 Score =  338 bits (867), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 174/303 (57%), Positives = 229/303 (75%), Gaps = 3/303 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSER VSLSSG ACA+ LE+ G++V++IDVDR+V  +L  LKPD+ FN LHG
Sbjct: 6   VAVLMGGFSSERSVSLSSGVACATTLEECGYRVTRIDVDRNVASILVELKPDVVFNALHG 65

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG +Q +LE L+IPYTHSG+LASAL+MDK R+K+V ++ GV V PS L+NRF + S
Sbjct: 66  PFGEDGAIQGVLEYLQIPYTHSGVLASALAMDKDRAKKVAAAAGVVVAPSRLMNRFDIGS 125

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           QH + PPYV+KP++ GSS G++++K+DQ  P  ++ S+ W +GD++++E Y+ G ELTC 
Sbjct: 126 QHPMKPPYVVKPVREGSSFGVVIVKEDQPHPPQVIGSADWKYGDEVMVEGYIAGRELTCA 185

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           VMGD ++DV EI      FY Y+ KY +  STHV PAKI  +IY+++Q +A  AH+AIGC
Sbjct: 186 VMGDRAMDVCEIMPVGYQFYDYDSKYVAGASTHVCPAKILPNIYQKIQTMALTAHRAIGC 245

Query: 241 RGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           RG+SRSDF FD       +V WLEIN QPGMTP S+ P++A  AG SF ELL WM+EDAS
Sbjct: 246 RGVSRSDFRFDDRFSEEGEVVWLEINTQPGMTPTSLVPDIAKAAGISFAELLSWMMEDAS 305

Query: 298 CLR 300
           CLR
Sbjct: 306 CLR 308


>gi|237815828|ref|ZP_04594825.1| D-alanine--D-alanine ligase [Brucella abortus str. 2308 A]
 gi|297248708|ref|ZP_06932426.1| D-alanine-D-alanine ligase B [Brucella abortus bv. 5 str. B3196]
 gi|237789126|gb|EEP63337.1| D-alanine--D-alanine ligase [Brucella abortus str. 2308 A]
 gi|297175877|gb|EFH35224.1| D-alanine-D-alanine ligase B [Brucella abortus bv. 5 str. B3196]
          Length = 315

 Score =  338 bits (867), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 174/303 (57%), Positives = 229/303 (75%), Gaps = 3/303 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSER VSLSSG ACA+ LE+ G++V++IDVDR+V  +L  LKPD+ FN LHG
Sbjct: 13  VAVLMGGFSSERSVSLSSGVACATTLEECGYRVTRIDVDRNVASILVELKPDVVFNALHG 72

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG +Q +LE L+IPYTHSG+LASAL+MDK R+K+V ++ GV V PS L+NRF + S
Sbjct: 73  PFGEDGAIQGVLEYLQIPYTHSGVLASALAMDKDRAKKVAAAAGVVVAPSRLMNRFDIGS 132

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           QH + PPYV+KP++ GSS G++++K+DQ  P  ++ S+ W +GD++++E Y+ G ELTC 
Sbjct: 133 QHPMKPPYVVKPVREGSSFGVVIVKEDQPHPPQVIGSADWKYGDEVMVEGYIAGRELTCA 192

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           VMGD ++DV EI      FY Y+ KY +  STHV PAKI  +IY+++Q +A  AH+AIGC
Sbjct: 193 VMGDRAMDVCEIMPVGYQFYDYDSKYVAGASTHVCPAKILPNIYQKIQTMALTAHRAIGC 252

Query: 241 RGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           RG+SRSDF FD       +V WLEIN QPGMTP S+ P++A  AG SF ELL WM+EDAS
Sbjct: 253 RGVSRSDFRFDDRFSEEGEVVWLEINTQPGMTPTSLVPDIAKAAGISFAELLSWMMEDAS 312

Query: 298 CLR 300
           CLR
Sbjct: 313 CLR 315


>gi|49475852|ref|YP_033893.1| D-alanine--D-alanine ligase [Bartonella henselae str. Houston-1]
 gi|123720824|sp|Q6G2Q8|DDL_BARHE RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|30526097|gb|AAP32279.1| D-alanine D-alanine ligase B [Bartonella henselae str. Houston-1]
 gi|49238660|emb|CAF27906.1| D-alanine--D-alanine ligase [Bartonella henselae str. Houston-1]
          Length = 306

 Score =  337 bits (864), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 165/301 (54%), Positives = 226/301 (75%), Gaps = 1/301 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSER VSLSSG ACA  LE  G++VS++DVD  +  VL  L+PD+AFN LHG
Sbjct: 6   IAVLMGGFSSERSVSLSSGTACADVLEAQGYRVSRVDVDGHIASVLEQLQPDIAFNALHG 65

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG +Q +LE L+IPYTHSG++ASAL+MDK R+K VV+S GV + PS +++RF +  
Sbjct: 66  PFGEDGRIQGVLEYLKIPYTHSGVMASALAMDKGRAKIVVASVGVSIAPSCVMSRFAVGK 125

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +H + PPYVIKP+  GSSLG+I++K+++S+P   +  S W + D +++E+Y+ G ELTC 
Sbjct: 126 EHPMEPPYVIKPVCEGSSLGVIIVKENESVPSLNVVGSEWVYADTVIVEKYIPGRELTCA 185

Query: 181 VMGDASLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
           VMG+ +LDV EI   K   FY Y+ KY S  S HV PA++  +IY+ VQR++  AHQAIG
Sbjct: 186 VMGNKALDVCEILPEKHFQFYDYDSKYKSGGSLHVCPAQLSSNIYQNVQRMSLAAHQAIG 245

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
           CRG+SRSDF FD  + ++ WLEIN QPGMTP S+FP++A  +G ++ +++ WMVEDASC+
Sbjct: 246 CRGVSRSDFRFDEETGELVWLEINTQPGMTPTSLFPDIAKASGRTYGDIVQWMVEDASCM 305

Query: 300 R 300
           R
Sbjct: 306 R 306


>gi|158426185|ref|YP_001527477.1| D-alanine--D-alanine ligase [Azorhizobium caulinodans ORS 571]
 gi|190359111|sp|A8HZA8|DDL_AZOC5 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|158333074|dbj|BAF90559.1| D-alanine ligase [Azorhizobium caulinodans ORS 571]
          Length = 306

 Score =  333 bits (855), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 162/303 (53%), Positives = 217/303 (71%), Gaps = 4/303 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG S EREVSL SG  CA ALE+ G++V+++DVDR V  VLA LKPD+A N+LHG
Sbjct: 5   VAVLMGGWSPEREVSLRSGAGCAKALEEVGYRVTRVDVDRDVAEVLARLKPDVALNLLHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q ILE+L IPY+HSG+LASAL+MDK R+K V+++ G+PV    LV R     
Sbjct: 65  CPGEDGTIQGILEILRIPYSHSGVLASALAMDKARAKVVMAAAGIPVPGGHLVTRAEAAK 124

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            H++ PPYV+KP  GGSS+G+ ++K+DQ  P   L  + W  G+ L+ E ++ G+ELTCG
Sbjct: 125 GHVLPPPYVLKPNTGGSSVGVFIVKEDQPHPPQELFRADWTFGESLMAEPFIKGLELTCG 184

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           VMGD +LDV E+      FY YE KY++  S H+LPA++   IY++V+ LA  AH+A+GC
Sbjct: 185 VMGDRALDVIEVEAVHG-FYDYESKYAAGGSRHILPARVLPQIYQQVRMLALEAHRALGC 243

Query: 241 RGISRSDFLFD---PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           RGISR+DF +D   P  + +  LE+N QPGMT  S+ P+MAA+AG SF EL+ WMVEDA+
Sbjct: 244 RGISRADFRYDDTLPDGKGLVCLEVNTQPGMTETSLVPDMAAHAGISFGELVTWMVEDAT 303

Query: 298 CLR 300
             R
Sbjct: 304 LDR 306


>gi|319408821|emb|CBI82478.1| D-alanine--D-alanine ligase [Bartonella schoenbuchensis R1]
          Length = 306

 Score =  333 bits (854), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 159/301 (52%), Positives = 225/301 (74%), Gaps = 1/301 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSER VSLSSG ACA ALE  G+ V ++DVD+ +  VL  L+PD+ FN LHG
Sbjct: 6   IAVLMGGFSSERSVSLSSGTACADALEKQGYHVIRVDVDQQIATVLKQLQPDIVFNALHG 65

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG +Q ILE  +IPYTHSG++ASAL+MDK R+K +V++ GV V PS ++NRF +  
Sbjct: 66  PFGEDGCIQGILEYFKIPYTHSGVMASALAMDKGRAKVIVANAGVHVAPSCVMNRFAIGR 125

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +H + PPYVIKP++ GSS G++++  D+++PL  + SS W +GD++++E+Y+ G ELTC 
Sbjct: 126 EHPMEPPYVIKPVREGSSFGVVIVSGDEALPLCNVMSSEWVYGDEVIVEKYIPGRELTCA 185

Query: 181 VMGDASLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
           V+GD +LDV EI   K   FY Y+ KY    S H+ PA++ L+IY++VQR++  AH+AIG
Sbjct: 186 VLGDEALDVCEIVPDKHFQFYDYDSKYKLGGSLHICPAQLSLNIYQKVQRMSLAAHRAIG 245

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
           CRG+SRSDF F   + ++ WLEIN QPGMTPVS+ P++A  +G ++ +++ W+ EDASC+
Sbjct: 246 CRGVSRSDFRFVEETEELVWLEINTQPGMTPVSLVPDIAKASGRTYGDIVKWIAEDASCM 305

Query: 300 R 300
           R
Sbjct: 306 R 306


>gi|323137889|ref|ZP_08072964.1| D-alanine/D-alanine ligase [Methylocystis sp. ATCC 49242]
 gi|322396892|gb|EFX99418.1| D-alanine/D-alanine ligase [Methylocystis sp. ATCC 49242]
          Length = 307

 Score =  332 bits (851), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 159/303 (52%), Positives = 212/303 (69%), Gaps = 3/303 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG+S+ERE+SL SG+ACA ALE+  ++VS++DV      VLA L+PD+AFN LHG
Sbjct: 5   VAVLMGGLSAEREISLRSGEACAKALEEQAYRVSRVDVGHDAASVLAALEPDVAFNALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG +Q +LELL IPYTHSG+LAS+++M K  +K V+++ GVPV    +V+R     
Sbjct: 65  KFGEDGCIQGVLELLRIPYTHSGVLASSVAMKKDVAKVVMAAAGVPVPKGRVVHRLEAAK 124

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            H++  PYV+KP+  GSS G+ +I    + P   L  + W HGD +L EQ++ G ELTC 
Sbjct: 125 AHVLPVPYVLKPISEGSSFGVFIITDGDAPPPRELARADWAHGDLMLAEQFIAGRELTCA 184

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           VMGD +LDV EI      +Y Y  KY+   S HVLPA +  +IY+EVQ LA  AH+A+GC
Sbjct: 185 VMGDRALDVIEILAADGGWYDYHAKYAKGGSKHVLPANLKQNIYQEVQHLAIEAHRALGC 244

Query: 241 RGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           RG+SR+DF +D     + ++  LE+N QPGMT  S+ PEMAAYAG+SF EL+ WMVEDAS
Sbjct: 245 RGVSRADFRYDDRPGGTGELVVLEVNTQPGMTETSLVPEMAAYAGFSFGELVRWMVEDAS 304

Query: 298 CLR 300
           C R
Sbjct: 305 CDR 307


>gi|254470440|ref|ZP_05083844.1| D-alanine--D-alanine ligase B [Pseudovibrio sp. JE062]
 gi|211960751|gb|EEA95947.1| D-alanine--D-alanine ligase B [Pseudovibrio sp. JE062]
          Length = 307

 Score =  332 bits (850), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 155/303 (51%), Positives = 219/303 (72%), Gaps = 3/303 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG  +ER VSLSSGK CA ALE AG++V+++DVDR++  VL  LKPD+AFN LHG
Sbjct: 5   VAVLMGGWVAERPVSLSSGKDCADALEAAGYQVTRVDVDRNISAVLQDLKPDVAFNALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG +Q ILE+L+IPYTHSG+++SAL+M K ++K V+ + GVPV  S++V+R     
Sbjct: 65  PFGEDGAIQGILEVLDIPYTHSGVMSSALAMHKEKAKAVMKAAGVPVANSLVVSRADAAR 124

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +H++ PPYVIKP+  GSS G++++K+ Q  P   L    W +G+ L++E+Y+ G ELTC 
Sbjct: 125 RHVMEPPYVIKPINEGSSFGVLIVKEGQEYPPQELTRDDWEYGELLMVERYIPGRELTCA 184

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           VMGD +L V EI      +Y Y+ KY    S H+LPA+I   +Y+E+Q+ +  AH A+GC
Sbjct: 185 VMGDVALGVLEIVPLGHAYYDYDAKYVPGGSQHILPAEILPSVYQEIQKSSLKAHHALGC 244

Query: 241 RGISRSDFLFDPLS---RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           RG++R+DF F+       ++  LE+N QPGMTP S+ PE+AA+AG+ F+EL+ W+VEDAS
Sbjct: 245 RGVTRADFRFNEGPGGLGELICLEVNTQPGMTPTSLLPEIAAHAGHDFQELVSWIVEDAS 304

Query: 298 CLR 300
           C R
Sbjct: 305 CGR 307


>gi|319406003|emb|CBI79634.1| D-alanine--D-alanine ligase [Bartonella sp. AR 15-3]
          Length = 306

 Score =  332 bits (850), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 159/302 (52%), Positives = 225/302 (74%), Gaps = 3/302 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG+SSER VSLSSG ACA  LE  G+ V+++DVD  +  +L  L+P + FN LHG
Sbjct: 6   IAVLMGGLSSERSVSLSSGSACADVLEAHGYYVTRVDVDSRIASILEKLQPHIVFNALHG 65

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
           +FGEDG +Q ILE L+IPYTHSG++ASAL+MDK R+K + +S G+P+ PS  ++RF + S
Sbjct: 66  SFGEDGCIQGILEYLKIPYTHSGVMASALAMDKGRAKIIAASVGIPIAPSYTMSRFAIGS 125

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +H + PPYVIKP+  GSS GII++  D++ P   + SS W H D++++E+Y+ G ELTC 
Sbjct: 126 KHPLEPPYVIKPVHEGSSFGIIIVNGDEAFPPRNIASSEWMHEDEVMVEKYIPGRELTCA 185

Query: 181 VMGDASLDVTEIAVPKS--DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           V+G+  LDV EI +P     FY+Y+ KY S  S H+ PA++ L+IY++VQR++  AHQAI
Sbjct: 186 VLGNEVLDVCEI-IPDQHFQFYNYDSKYKSGGSIHICPAQLSLNIYQKVQRISLAAHQAI 244

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           GCRGISRSDF F+  + ++ WLEIN QPGMTP S+ P++A  +G ++ +++ W+VEDASC
Sbjct: 245 GCRGISRSDFRFNEETEELIWLEINTQPGMTPTSLVPDIAKASGRTYSDIVKWIVEDASC 304

Query: 299 LR 300
           +R
Sbjct: 305 MR 306


>gi|328542969|ref|YP_004303078.1| D-alanine--D-alanine ligase B [polymorphum gilvum SL003B-26A1]
 gi|326412715|gb|ADZ69778.1| D-alanine--D-alanine ligase B [Polymorphum gilvum SL003B-26A1]
          Length = 308

 Score =  331 bits (848), Expect = 9e-89,   Method: Compositional matrix adjust.
 Identities = 163/303 (53%), Positives = 221/303 (72%), Gaps = 3/303 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG  +ER VSLSSG+ACA ALE  G++V++IDVDR++  VLA  KPD+AFN LHG
Sbjct: 6   VAVLMGGWVNERPVSLSSGRACADALEARGYRVTRIDVDRTIAAVLAEAKPDVAFNALHG 65

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG +Q ILE+L+IPYTHSG++ASAL+M+K+++K V+++ GVPV    +V+R ++ S
Sbjct: 66  PFGEDGCIQGILEILQIPYTHSGVMASALAMNKVKAKAVMAAAGVPVTEHRIVDRRSIGS 125

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +H ++PPYV+KP+  GSS G++++K+D   P   L    W + D L+ E+Y+ G ELTC 
Sbjct: 126 EHPMAPPYVLKPINEGSSFGVLIVKEDAQFPPQELSRDDWPYPDVLMCERYIPGRELTCA 185

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           VMGD +L V +I      FY YE KY+   S H+LPAKI   IY+EVQ+L   AHQA+GC
Sbjct: 186 VMGDRALGVIDIVPLGHGFYDYEAKYAEGGSQHILPAKISPIIYQEVQKLTLTAHQALGC 245

Query: 241 RGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           RG+SR+DF FD     +  +  LE+N QPGMTP S+ PE+AA+ GY F +L+ WMVEDAS
Sbjct: 246 RGVSRADFRFDEKADGTSSLICLEVNTQPGMTPTSLVPELAAHEGYDFGDLVTWMVEDAS 305

Query: 298 CLR 300
           C R
Sbjct: 306 CCR 308


>gi|170748771|ref|YP_001755031.1| D-alanine--D-alanine ligase [Methylobacterium radiotolerans JCM
           2831]
 gi|190359165|sp|B1LXZ1|DDL_METRJ RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|170655293|gb|ACB24348.1| D-alanine--D-alanine ligase [Methylobacterium radiotolerans JCM
           2831]
          Length = 307

 Score =  329 bits (844), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 157/303 (51%), Positives = 213/303 (70%), Gaps = 3/303 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SGKACA ALE  G++V+++DV   +  VL  L+PD AFN LHG
Sbjct: 5   VAVLLGGTSAEREVSLNSGKACADALEGEGYRVTRVDVGPDIASVLTALRPDAAFNALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LE+L+IPYTHSG+LASAL+M+K R+K V+ + GV V    +VNR     
Sbjct: 65  PDGEDGTIQGLLEILKIPYTHSGVLASALAMNKERAKTVMRAAGVDVPEGRIVNRREAAR 124

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            H + PPYV+KP+  GSS+G+I+++  +S P  +L S  W  G+Q+L E Y+ G ELTCG
Sbjct: 125 THPLPPPYVVKPIAEGSSVGVIIVRDGRSHPPQILASEEWTFGEQVLAEPYIAGRELTCG 184

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           VMGD +L V E+     D+Y Y+ KY+   S HVLPA++  ++Y+ VQ L+  AHQA+GC
Sbjct: 185 VMGDKALGVIEVKAATGDWYDYDAKYAPGGSVHVLPAELKPNVYQRVQELSLTAHQALGC 244

Query: 241 RGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           RG+SR+D  +D     +  +  LE+N QPGMT  S+ PEMAA+AG SF EL+ WMVEDAS
Sbjct: 245 RGVSRADLRYDDTPGGTGLLVVLEVNTQPGMTQTSLVPEMAAHAGLSFGELVRWMVEDAS 304

Query: 298 CLR 300
             R
Sbjct: 305 LNR 307


>gi|254503140|ref|ZP_05115291.1| putative D-ala D-ala ligase N-terminal domain protein [Labrenzia
           alexandrii DFL-11]
 gi|222439211|gb|EEE45890.1| putative D-ala D-ala ligase N-terminal domain protein [Labrenzia
           alexandrii DFL-11]
          Length = 327

 Score =  328 bits (841), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 159/303 (52%), Positives = 216/303 (71%), Gaps = 3/303 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG  +ER VSLSSGK CA ALE+AG++VS++DVDR+V  VL  L+PD+AFN LHG
Sbjct: 25  VAVLMGGWVNERPVSLSSGKECAIALEEAGYRVSRVDVDRNVSAVLTELQPDVAFNALHG 84

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG VQ ILE L IPYTHSG++AS+L+M+K+++K V+++ G+PV    +VNR  +  
Sbjct: 85  PFGEDGCVQGILEFLNIPYTHSGVMASSLAMNKVKAKAVMAAAGIPVTEHKVVNRHDISR 144

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +H + PPYV+KP+  GSS G++++K+DQ  P   L    W + D L+ E+++ G ELTC 
Sbjct: 145 EHPMEPPYVLKPINEGSSFGVLIVKEDQEFPPQELHREDWPYPDVLMCEKFIRGRELTCA 204

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V  D +L V +I     +FY ++ KY+   S H+LPAKI   +Y+  + LA  AHQA+GC
Sbjct: 205 VKDDQALGVIDIVTQGQEFYDFDAKYAEGGSKHILPAKISPLVYQTAETLAVKAHQALGC 264

Query: 241 RGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           RG+SR+DF FD     S  +  LE+N QPGMTP S+ PEMAAY G SF++L+ WMVEDAS
Sbjct: 265 RGVSRADFRFDEREDGSGDLICLEVNTQPGMTPTSLVPEMAAYKGMSFKDLVSWMVEDAS 324

Query: 298 CLR 300
           C R
Sbjct: 325 CCR 327


>gi|154252866|ref|YP_001413690.1| D-alanine--D-alanine ligase [Parvibaculum lavamentivorans DS-1]
 gi|190359199|sp|A7HVV0|DDL_PARL1 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|154156816|gb|ABS64033.1| D-alanine--D-alanine ligase [Parvibaculum lavamentivorans DS-1]
          Length = 308

 Score =  328 bits (840), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 156/303 (51%), Positives = 211/303 (69%), Gaps = 4/303 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL SGK CA AL   G++V++ID  R +   +  +KPD+AFN LHG
Sbjct: 7   VAVLKGGWSAEREVSLVSGKGCAEALRKHGYRVTEIDAGRDLADQILKVKPDVAFNALHG 66

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG VQ +LE+L +PYTHSG+LASAL+M K R+K V  + G+PV  S++V R     
Sbjct: 67  RWGEDGCVQGLLEILRVPYTHSGVLASALAMHKERAKFVFRAAGLPVAESVVVPREQAAH 126

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            H++ PPYVIKP+  GSS+G+ +++   + P   L S+ WN GD+++ E+Y+ G ELTC 
Sbjct: 127 GHVMDPPYVIKPVSEGSSVGVFIVRAGDNRPPAELTSAEWNLGDEVMAERYIAGRELTCA 186

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           VMG+    VTEI +  + FY YE KY +  S H++PA I  DIY EVQR+   AH+A+GC
Sbjct: 187 VMGEEIFGVTEI-IANTTFYDYEAKYQTGGSRHIIPAPIDADIYAEVQRVTLAAHKALGC 245

Query: 241 RGISRSDFLFD---PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           RG+SR+DF FD   P   ++  LE+N QPGMTP S+ PE+A  AGYS+ EL+ WMVE+AS
Sbjct: 246 RGVSRADFRFDDTRPGKPELILLEVNTQPGMTPTSLVPELANLAGYSYGELVSWMVEEAS 305

Query: 298 CLR 300
           C R
Sbjct: 306 CDR 308


>gi|254562111|ref|YP_003069206.1| D-alanine--D-alanine ligase [Methylobacterium extorquens DM4]
 gi|254269389|emb|CAX25355.1| D-alanine--D-alanine ligase [Methylobacterium extorquens DM4]
          Length = 307

 Score =  327 bits (838), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 157/303 (51%), Positives = 212/303 (69%), Gaps = 3/303 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSERE+SL SG ACA ALE  G++V+++DV   +  VL  LKPD A N LHG
Sbjct: 5   VAVLMGGWSSEREISLRSGNACAEALEGEGYRVTRVDVGPDIATVLTELKPDAALNALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LE+L+IPYTHSG+LASAL+M K R+K V+ + GV V    +VNR     
Sbjct: 65  PAGEDGTIQGLLEILKIPYTHSGVLASALAMHKERAKTVMRAAGVSVPEGRVVNRHDAAK 124

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            H ++PPYV+KP+  GSS+G+I+++ ++S P  +L S  W +G+++L E YV G ELTC 
Sbjct: 125 SHPLTPPYVVKPIAEGSSMGVIIVRDERSHPPQILASDEWVYGEEVLAETYVAGRELTCA 184

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V+GD +L VTEI     ++Y ++ KY+   S HVLPA + L+IY+ VQ LA  AHQA+GC
Sbjct: 185 VLGDRALGVTEIKPVSGEWYDFDAKYAGGGSIHVLPADLKLNIYQRVQELALTAHQALGC 244

Query: 241 RGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           RG+SR+D  +D     +  +  LE+N QPGMT  S+ PE+AA+AG SF EL+ WMVEDAS
Sbjct: 245 RGVSRADLRYDDTPGGTGALVVLEVNTQPGMTQTSLVPEIAAHAGQSFGELVRWMVEDAS 304

Query: 298 CLR 300
             R
Sbjct: 305 LNR 307


>gi|188582372|ref|YP_001925817.1| D-alanine--D-alanine ligase [Methylobacterium populi BJ001]
 gi|229485965|sp|B1ZGP9|DDL_METPB RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|179345870|gb|ACB81282.1| D-alanine--D-alanine ligase [Methylobacterium populi BJ001]
          Length = 307

 Score =  327 bits (837), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 156/303 (51%), Positives = 213/303 (70%), Gaps = 3/303 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSERE+SL SG ACA ALE  G++V+++DV   +  VL  LKPD A N LHG
Sbjct: 5   VAVLMGGWSSEREISLRSGNACAEALEGEGYRVTRVDVGPDIATVLTDLKPDAALNALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LE+L+IPYTHSG+LASAL+M K R+K V+ + GV V    +VNR     
Sbjct: 65  PAGEDGTIQGLLEILKIPYTHSGVLASALAMHKERAKTVMRAAGVSVPEGRVVNRHDAAK 124

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            H ++PPYV+KP+  GSS+G+I++++++S P  +L S  W +G+++L E Y+ G ELTC 
Sbjct: 125 SHPLTPPYVVKPIAEGSSMGVIIVREERSHPPQILASDEWVYGEEVLAETYIAGRELTCA 184

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V+GD +L VTEI     ++Y ++ KY+   S HVLPA + L+IY+ VQ LA  AHQA+GC
Sbjct: 185 VLGDRALGVTEIKPVSGEWYDFDAKYAGGGSIHVLPADLKLNIYQRVQELALTAHQALGC 244

Query: 241 RGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           RG+SR+D  +D     +  +  LE+N QPGMT  S+ PE+AA+AG SF EL+ WMVEDAS
Sbjct: 245 RGVSRADLRYDDTPGGTGALVVLEVNTQPGMTQTSLVPEIAAHAGLSFGELVRWMVEDAS 304

Query: 298 CLR 300
             R
Sbjct: 305 LNR 307


>gi|218531123|ref|YP_002421939.1| D-alanine--D-alanine ligase [Methylobacterium chloromethanicum CM4]
 gi|254767733|sp|B7KSC6|DDL_METC4 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|218523426|gb|ACK84011.1| D-alanine/D-alanine ligase [Methylobacterium chloromethanicum CM4]
          Length = 307

 Score =  327 bits (837), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 156/303 (51%), Positives = 213/303 (70%), Gaps = 3/303 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSERE+SL SG ACA+ALE  G++V+++DV   +  VL  L+PD A N LHG
Sbjct: 5   VAVLMGGWSSEREISLRSGNACAAALEGEGYRVTRVDVGPDIATVLTELRPDAALNALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LE+L+IPYTHSG+LASAL+M K R+K V+ + GV V    +VNR     
Sbjct: 65  PAGEDGTIQGLLEILKIPYTHSGVLASALAMHKERAKTVMRAAGVSVPEGRVVNRHDAAK 124

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            H ++PPYV+KP+  GSS+G+I+++ ++S P  +L S  W +G+++L E YV G ELTC 
Sbjct: 125 SHPLTPPYVVKPIAEGSSMGVIIVRDERSHPPQILASDEWVYGEEVLAETYVAGRELTCA 184

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V+GD +L VTEI     ++Y ++ KY+   S HVLPA + L+IY+ VQ LA  AHQA+GC
Sbjct: 185 VLGDRALGVTEIKPVSGEWYDFDAKYAGGGSIHVLPADLKLNIYQRVQELALTAHQALGC 244

Query: 241 RGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           RG+SR+D  +D     +  +  LE+N QPGMT  S+ PE+AA+AG SF EL+ WMVEDAS
Sbjct: 245 RGVSRADLRYDDTPGGTGALVVLEVNTQPGMTQTSLVPEIAAHAGQSFGELVRWMVEDAS 304

Query: 298 CLR 300
             R
Sbjct: 305 LNR 307


>gi|163868710|ref|YP_001609922.1| D-alanine--D-alanine ligase [Bartonella tribocorum CIP 105476]
 gi|189083032|sp|A9IWA2|DDL_BART1 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|161018369|emb|CAK01927.1| D-alanine--D-alanine ligase [Bartonella tribocorum CIP 105476]
          Length = 306

 Score =  327 bits (837), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 156/302 (51%), Positives = 224/302 (74%), Gaps = 3/302 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSER +SLSSG ACA  LE+ G++VS++DV   +  VL  L+PD+AFN LHG
Sbjct: 6   IAVLMGGFSSERSISLSSGAACADVLEEQGYRVSRVDVGAHIASVLEQLQPDIAFNALHG 65

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG +Q ILE L+IPYTHSG++ASAL+MDK R+K + ++ GV V PS ++NRF++  
Sbjct: 66  PFGEDGRIQGILEYLKIPYTHSGVMASALAMDKGRAKIIAANAGVCVAPSRIMNRFSIGK 125

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            H + PPYVIKP+  GSS G++++++++++P   +  S W + D++++E+Y+ G ELTC 
Sbjct: 126 THPMEPPYVIKPVCEGSSFGVVIVQENEAVPPHNIGGSEWGYADEVMVEKYIPGRELTCA 185

Query: 181 VMGDASLDVTEIAVPKSD--FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           V+G+  LDV EI +P     FY Y+ KY +  S H+ PAK+ L+IY+ VQR++  AHQAI
Sbjct: 186 VLGNEVLDVCEI-LPDQHFAFYDYDSKYKTGGSLHICPAKLSLNIYQSVQRMSLAAHQAI 244

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           GCRG+SRSDF FD  + ++ WLEIN QPGMT  S+ P++A  +G ++ +++ WMVEDASC
Sbjct: 245 GCRGVSRSDFRFDEKTGELVWLEINTQPGMTSTSLLPDIAKASGRTYGDIVQWMVEDASC 304

Query: 299 LR 300
           +R
Sbjct: 305 MR 306


>gi|240139699|ref|YP_002964176.1| D-alanine--D-alanine ligase [Methylobacterium extorquens AM1]
 gi|240009673|gb|ACS40899.1| D-alanine--D-alanine ligase [Methylobacterium extorquens AM1]
          Length = 307

 Score =  326 bits (836), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 156/303 (51%), Positives = 212/303 (69%), Gaps = 3/303 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSERE+SL SG ACA ALE  G++V+++DV   +  VL  L+PD A N LHG
Sbjct: 5   VAVLMGGWSSEREISLRSGNACAEALEGEGYRVTRVDVGPDIATVLTELRPDAALNALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LE+L+IPYTHSG+LASAL+M K R+K V+ + GV V    +VNR     
Sbjct: 65  PAGEDGTIQGLLEILKIPYTHSGVLASALAMHKERAKTVMRAAGVSVPEGRVVNRHDAAK 124

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            H ++PPYV+KP+  GSS+G+I+++ ++S P  +L S  W +G+++L E YV G ELTC 
Sbjct: 125 SHPLTPPYVVKPIAEGSSMGVIIVRDERSHPPQILASDEWVYGEEVLAETYVAGRELTCA 184

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V+GD +L VTEI     ++Y ++ KY+   S HVLPA + L+IY+ VQ LA  AHQA+GC
Sbjct: 185 VLGDRALGVTEIKPVSGEWYDFDAKYAGGGSIHVLPADLKLNIYQRVQELALTAHQALGC 244

Query: 241 RGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           RG+SR+D  +D     +  +  LE+N QPGMT  S+ PE+AA+AG SF EL+ WMVEDAS
Sbjct: 245 RGVSRADLRYDDTPGGTGALVVLEVNTQPGMTQTSLVPEIAAHAGQSFGELVRWMVEDAS 304

Query: 298 CLR 300
             R
Sbjct: 305 LNR 307


>gi|319899154|ref|YP_004159247.1| D-alanine--D-alanine ligase [Bartonella clarridgeiae 73]
 gi|319403118|emb|CBI76676.1| D-alanine--D-alanine ligase [Bartonella clarridgeiae 73]
          Length = 306

 Score =  325 bits (834), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 156/302 (51%), Positives = 223/302 (73%), Gaps = 3/302 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG+SSER VSLSSG ACA  LE  G+ V+++DVD  +  +L  L+P +AFN LHG
Sbjct: 6   IAVLMGGVSSERSVSLSSGSACADVLEAHGYYVTRVDVDSRIASILEKLQPHIAFNALHG 65

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
           +FGEDG +Q ILE L+IPYTHSG++AS+L+MDK R+K + +S GVPV PS ++NRF +  
Sbjct: 66  SFGEDGCIQGILEYLKIPYTHSGVMASSLAMDKGRAKIIAASVGVPVAPSYVMNRFAIGV 125

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +H + PPYVIKP+  GSS G++++  D+  P   + SS W + D++++E+Y+ G ELTC 
Sbjct: 126 KHPLEPPYVIKPVHEGSSFGVVIVLGDEECPPHNIASSEWKYEDEVIVEKYIPGRELTCA 185

Query: 181 VMGDASLDVTEIAVPKS--DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           V+GD  LDV EI +P     FY Y+ KY +  S H+ PA++ L+IY++VQR++  AHQAI
Sbjct: 186 VLGDEVLDVCEI-IPDQHFQFYDYDSKYKAGGSIHICPAQLSLNIYQKVQRMSLAAHQAI 244

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           GCRG+SRSDF F+  + ++ WLEIN QPGMT  S+ P++A  +G ++ +++ W+VEDASC
Sbjct: 245 GCRGVSRSDFRFNEETEELIWLEINTQPGMTVTSLVPDIAKASGRTYSDIVKWIVEDASC 304

Query: 299 LR 300
           +R
Sbjct: 305 MR 306


>gi|312114841|ref|YP_004012437.1| D-alanine/D-alanine ligase [Rhodomicrobium vannielii ATCC 17100]
 gi|311219970|gb|ADP71338.1| D-alanine/D-alanine ligase [Rhodomicrobium vannielii ATCC 17100]
          Length = 309

 Score =  325 bits (833), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 158/304 (51%), Positives = 215/304 (70%), Gaps = 5/304 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSEREVSL+SG+ACA ALE  G++V++IDV R +   LA LKPD AFN LHG
Sbjct: 7   IAVLMGGWSSEREVSLNSGEACAGALEAQGYRVTRIDVGRDIADRLAALKPDAAFNALHG 66

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG VQ ILE L+IPYTHSG+LASAL+MDK R+K  + + GVPV   ++ +      
Sbjct: 67  KWGEDGCVQGILETLQIPYTHSGVLASALAMDKARAKVAMKAAGVPVAAGVVASPAKAAQ 126

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +HL+ PPYV+KP+  GSS+G+ +++ D   P   L  + W HGD +L+E+YV G ELTC 
Sbjct: 127 RHLLPPPYVVKPVCEGSSVGVFIVRNDYEHPPQELTRADWTHGD-VLVERYVAGRELTCA 185

Query: 181 VMGDASLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
           V+GD +L + EI   +   FY YE KY+   S H+LPA++  +IY+ +Q++A  AH A+G
Sbjct: 186 VLGDRALGIIEIKPAEGLIFYDYEAKYAKGGSYHILPARLSPEIYENIQKMAVDAHHALG 245

Query: 240 CRGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           CRG+SR+DF  D     + ++  LE+N QPGMT  S+ PE+AA+AG SF EL+ W+VE+A
Sbjct: 246 CRGVSRADFRLDDRPEGTGELVCLEVNTQPGMTATSLVPELAAHAGLSFGELVRWIVENA 305

Query: 297 SCLR 300
           SC R
Sbjct: 306 SCNR 309


>gi|163852363|ref|YP_001640406.1| D-alanine--D-alanine ligase [Methylobacterium extorquens PA1]
 gi|226696389|sp|A9VWV8|DDL_METEP RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|163663968|gb|ABY31335.1| D-alanine--D-alanine ligase [Methylobacterium extorquens PA1]
          Length = 307

 Score =  325 bits (832), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 155/303 (51%), Positives = 212/303 (69%), Gaps = 3/303 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSERE+SL SG ACA ALE  G++V++++V   +  VL  L+PD A N LHG
Sbjct: 5   VAVLMGGWSSEREISLRSGNACAEALEGEGYRVTRVNVGPDIATVLTELRPDAALNALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LE+L+IPYTHSG+LASAL+M K R+K V+ + GV V    +VNR     
Sbjct: 65  PAGEDGTIQGLLEILKIPYTHSGVLASALAMHKERAKTVMRAAGVSVPEGRVVNRHDAAK 124

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            H ++PPYV+KP+  GSS+G+I+++ ++S P  +L S  W +G+++L E YV G ELTC 
Sbjct: 125 SHPLTPPYVVKPIAEGSSMGVIIVRDERSHPPQILASDEWVYGEEVLAETYVAGRELTCA 184

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V+GD +L VTEI     ++Y ++ KY+   S HVLPA + L+IY+ VQ LA  AHQA+GC
Sbjct: 185 VLGDRALGVTEIKPVSGEWYDFDAKYAGGGSIHVLPADLKLNIYQRVQELALTAHQALGC 244

Query: 241 RGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           RG+SR+D  +D     +  +  LE+N QPGMT  S+ PE+AA+AG SF EL+ WMVEDAS
Sbjct: 245 RGVSRADLRYDDTPGGTGALVVLEVNTQPGMTQTSLVPEIAAHAGQSFGELVRWMVEDAS 304

Query: 298 CLR 300
             R
Sbjct: 305 LNR 307


>gi|319407500|emb|CBI81148.1| D-alanine--D-alanine ligase [Bartonella sp. 1-1C]
          Length = 306

 Score =  324 bits (830), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 158/302 (52%), Positives = 224/302 (74%), Gaps = 3/302 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG+SSER VSLSSG ACA  LE  G+ V+++DVD  +  +L  L+P +AFN LHG
Sbjct: 6   IAVLMGGLSSERSVSLSSGSACADVLEAHGYSVTRVDVDSRIASILEKLQPHIAFNALHG 65

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
           +FGEDG +Q ILE L+IPYTHSG++ASAL+MDK R+K + +S GVPV PS +++R  + S
Sbjct: 66  SFGEDGRIQGILEYLKIPYTHSGVMASALAMDKGRAKIIAASAGVPVAPSYVMDRCAIGS 125

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           QH + PPYVIKP+  GSS+G+I++  D++ P   + SS     D++++E+Y+ G ELTC 
Sbjct: 126 QHPLEPPYVIKPVHEGSSVGVIIVNGDEAFPPHNIASSERMDKDEVIVEKYIPGRELTCA 185

Query: 181 VMGDASLDVTEIAVPKS--DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           V+GD  LDV EI +P     FY Y+ KY S  S H+ PA++ L+IY++VQR++ +AHQAI
Sbjct: 186 VLGDEVLDVCEI-IPDQHFQFYDYDSKYKSGGSIHICPAQLSLNIYQKVQRMSLVAHQAI 244

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           GCRG+SRSDF F+  + ++ WLEIN QPGMT  S+ P++A  +G ++ +++ W+VEDASC
Sbjct: 245 GCRGVSRSDFRFNEETEELIWLEINTQPGMTSTSLVPDIAKASGRTYSDIVKWIVEDASC 304

Query: 299 LR 300
           +R
Sbjct: 305 MR 306


>gi|240850889|ref|YP_002972289.1| D-alanine--D-alanine ligase [Bartonella grahamii as4aup]
 gi|240268012|gb|ACS51600.1| D-alanine--D-alanine ligase [Bartonella grahamii as4aup]
          Length = 306

 Score =  323 bits (829), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 157/301 (52%), Positives = 222/301 (73%), Gaps = 1/301 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSER VSLSSG ACA  LE  G++VS++DVD  +  VL  L+PD+AFN LHG
Sbjct: 6   IAVLMGGFSSERSVSLSSGAACADVLEVQGYRVSRVDVDAHIASVLEQLQPDIAFNALHG 65

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG +Q ILE L+IPYTHSG++ASAL+MDK R+K +V++ GV V PS +++RF +  
Sbjct: 66  PFGEDGRIQGILEYLKIPYTHSGVMASALAMDKGRAKIIVANVGVCVAPSRIMSRFALGQ 125

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            H + PPYVIKP+  GSS G+++++++++ P   +  + W + D+++IE+Y+ G ELTC 
Sbjct: 126 THPMEPPYVIKPVCEGSSFGVVIVQENEAAPPHSIGGAEWGYADEVMIEKYIPGRELTCA 185

Query: 181 VMGDASLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
           V+G+  LDV EI   K   FY Y+ KY +  S H+ PA++ L+IY+ VQR++  AHQAIG
Sbjct: 186 VLGNEVLDVCEILPDKHFPFYDYDSKYKTGGSLHICPAQLSLNIYQSVQRMSLAAHQAIG 245

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
           CRG+SRSDF FD  + ++ WLEIN QPGMT  S+ P++A  +G ++ +++ WMVEDASC+
Sbjct: 246 CRGVSRSDFRFDEKTGELVWLEINTQPGMTSTSLLPDIAKASGRTYGDIVQWMVEDASCM 305

Query: 300 R 300
           R
Sbjct: 306 R 306


>gi|298293095|ref|YP_003695034.1| D-alanine/D-alanine ligase [Starkeya novella DSM 506]
 gi|296929606|gb|ADH90415.1| D-alanine/D-alanine ligase [Starkeya novella DSM 506]
          Length = 306

 Score =  323 bits (828), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 160/305 (52%), Positives = 217/305 (71%), Gaps = 8/305 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSER+VSL SG+ACA A E  G++V+++DV R +  VL  LKPD+A N LHG
Sbjct: 5   VAVLMGGWSSERQVSLWSGEACAKAAESVGYRVTRVDVGRDIAQVLTELKPDVALNALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG +Q +LE L++PYTHSG+LASAL+MDK ++K ++++  VPV    +V R     
Sbjct: 65  PYGEDGTIQGVLEFLQVPYTHSGVLASALAMDKAQAKIILAASDVPVPEGRVVTRAEAAR 124

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            H++  PYV+KP+  GSS+G+ +IK+DQ  P   L    W HGD LL E+Y+ G+ELTC 
Sbjct: 125 GHVLPRPYVLKPVSEGSSVGVFIIKEDQEHPPQELHRPDWPHGDLLLAERYIPGLELTCA 184

Query: 181 VMGDASLDVTEIAVPKSD--FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           VMGD +L V EI   +SD  FY YE KY+   S H+LPA+I  ++Y++V+ LA  AH+A+
Sbjct: 185 VMGDEALGVIEI---QSDLRFYDYEAKYTPGGSVHILPARILPNVYQKVRMLAVKAHRAL 241

Query: 239 GCRGISRSDFLFDPLS---RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           GCRGISRSDF +D  +     +  LE+N QPGMT +S+ PE+AA+AG+SF EL+ WMVED
Sbjct: 242 GCRGISRSDFRYDDRTGDESGLVCLEVNTQPGMTELSLVPELAAHAGHSFGELVRWMVED 301

Query: 296 ASCLR 300
           AS  R
Sbjct: 302 ASLDR 306


>gi|154244282|ref|YP_001415240.1| D-alanine--D-alanine ligase [Xanthobacter autotrophicus Py2]
 gi|229486024|sp|A7IC40|DDL_XANP2 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|154158367|gb|ABS65583.1| D-alanine--D-alanine ligase [Xanthobacter autotrophicus Py2]
          Length = 306

 Score =  322 bits (824), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 169/304 (55%), Positives = 220/304 (72%), Gaps = 6/304 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSEREVSL SG ACA ALE AG++V+++DV R V  VL HLKPD+AFNVLHG
Sbjct: 5   VAVLMGGWSSEREVSLRSGAACAGALEAAGYRVTRVDVGRDVAEVLTHLKPDVAFNVLHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q ILE+L IPY+HSG+LASAL+MDK +++ ++++ GVPV    LV+R     
Sbjct: 65  QPGEDGTIQGILEILRIPYSHSGVLASALAMDKAQARIMLAAAGVPVAKGGLVSRAEAAK 124

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            H++  PYV+KP  GGSS+G+ ++++DQ+ P   L    W HG+ LL E+++ G+ELTC 
Sbjct: 125 AHIMPTPYVLKPNAGGSSVGVFIVREDQAHPPQELTREDWPHGENLLAEEFIPGLELTCA 184

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           VMGD  LDV EI   +  FY YE KY+   S H+LPA+I  +IY+ VQ L+  AH+A+GC
Sbjct: 185 VMGDKVLDVIEIESTQK-FYDYESKYAPGGSQHILPARILPEIYQRVQMLSLTAHRALGC 243

Query: 241 RGISRSDFLFDPLSR----KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           RG+SRSDF FDP SR     +  LE+N QPGMT  S+ PE+AA+AG SF EL+ WMVEDA
Sbjct: 244 RGVSRSDFRFDP-SRGDGSGLICLEVNTQPGMTETSLVPELAAHAGISFGELVTWMVEDA 302

Query: 297 SCLR 300
           S  R
Sbjct: 303 SLER 306


>gi|319404507|emb|CBI78112.1| D-alanine--D-alanine ligase [Bartonella rochalimae ATCC BAA-1498]
          Length = 306

 Score =  321 bits (822), Expect = 9e-86,   Method: Compositional matrix adjust.
 Identities = 158/302 (52%), Positives = 222/302 (73%), Gaps = 3/302 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG+SSER VSLSSG ACA  LE  G+ V+++DVD  +  VL  L+P + FN LHG
Sbjct: 6   IAVLMGGLSSERSVSLSSGSACADILEAHGYSVTRVDVDSRIASVLEKLQPHIVFNALHG 65

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
           +FGEDG +Q ILE L+IPYTHSG++ASAL+MDK R+K + +S GVPV PS +++R  + S
Sbjct: 66  SFGEDGRIQGILEYLKIPYTHSGVMASALAMDKGRAKIIAASAGVPVAPSYVMDRCAIGS 125

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           QH + PPYVIKP+  GSS+G+I++  D++ P   + SS     D++++E+Y+ G ELTC 
Sbjct: 126 QHPLEPPYVIKPVHEGSSIGVIIVNGDEAFPPHNIVSSERMDKDEVIVEKYIPGRELTCA 185

Query: 181 VMGDASLDVTEIAVPKS--DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           V+GD  LDV EI +P     FY Y+ KY S  S H+ PA++ L+IY++VQR++  AHQAI
Sbjct: 186 VLGDEVLDVCEI-IPDQHFQFYDYDSKYKSGGSIHICPAQLSLNIYQKVQRMSLAAHQAI 244

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           GCRG+SRSDF F+  + ++ WLEIN QPGMT  S+ P++A  +G ++ +++ W+VEDASC
Sbjct: 245 GCRGVSRSDFRFNEETEELIWLEINTQPGMTSTSLVPDIAKASGRTYSDIVKWIVEDASC 304

Query: 299 LR 300
           +R
Sbjct: 305 MR 306


>gi|121602474|ref|YP_989225.1| D-alanine--D-alanine ligase [Bartonella bacilliformis KC583]
 gi|166198473|sp|A1UTC2|DDL_BARBK RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|47779265|gb|AAT38533.1| DdlB [Bartonella bacilliformis]
 gi|120614651|gb|ABM45252.1| D-alanine--D-alanine ligase [Bartonella bacilliformis KC583]
          Length = 306

 Score =  320 bits (821), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 157/302 (51%), Positives = 221/302 (73%), Gaps = 3/302 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VLMGG SSER VSLSSG ACA  LE  G+ V ++DVD  +  VL  L+P   FN LHG
Sbjct: 6   VTVLMGGWSSERSVSLSSGTACADILEAQGYNVVRVDVDDRIVSVLEELRPTTVFNALHG 65

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG +Q ILE L+IPYTHSG++ASAL+MDK R+K + +S GV V PS +++RF++ +
Sbjct: 66  PFGEDGCIQGILEYLKIPYTHSGVMASALAMDKGRAKIIAASAGVSVAPSCVMSRFSLGA 125

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +H + PPYVIKP++ GSS G++++  D+++PL  + ++ W + D++++E+YV G ELTC 
Sbjct: 126 EHPMKPPYVIKPIREGSSFGVVIVGSDETMPLHDIMNNEWVYDDEIMVEKYVPGRELTCA 185

Query: 181 VMGDASLDVTEIAVPKS--DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           V+GD  LDV EI VPK    FY Y+ KY S  S H+ PAK+  +IY+ VQR++  AHQAI
Sbjct: 186 VLGDEVLDVCEI-VPKECFQFYDYDSKYKSGGSLHICPAKLSSNIYQNVQRMSLAAHQAI 244

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           GCRG+SRSDF F+  + ++ WLEIN QPGMT  S+ P++A  +G ++ +++ W+VEDASC
Sbjct: 245 GCRGVSRSDFRFNEETGELIWLEINTQPGMTSTSLVPDIAKASGRTYGDIVKWIVEDASC 304

Query: 299 LR 300
           +R
Sbjct: 305 MR 306


>gi|329888138|ref|ZP_08266736.1| D-alanine--D-alanine ligase family protein [Brevundimonas diminuta
           ATCC 11568]
 gi|328846694|gb|EGF96256.1| D-alanine--D-alanine ligase family protein [Brevundimonas diminuta
           ATCC 11568]
          Length = 312

 Score =  318 bits (814), Expect = 9e-85,   Method: Compositional matrix adjust.
 Identities = 155/304 (50%), Positives = 212/304 (69%), Gaps = 5/304 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG+SSEREVSLSSG+ CA ALE    KV+++D  R +  VL  LKPD+ FN LHG
Sbjct: 10  VAVLMGGLSSEREVSLSSGRGCADALEGQVAKVTRVDAGRDLAQVLTALKPDVVFNALHG 69

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG VQ ILE L+IPYTHSG+LASAL+MDK +SK V+ + GV V    L +R  + S
Sbjct: 70  KWGEDGCVQGILETLKIPYTHSGVLASALAMDKDKSKAVLQAAGVIVPGGGLFDRHEVAS 129

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +H+I PPYV+KP   GSS+G+ V ++  + P+  + +  W +GDQ+++E ++ G EL   
Sbjct: 130 RHVIEPPYVVKPNAEGSSVGVYVAREGANRPVAEVGAEDWAYGDQVMVEPFIPGKELAVS 189

Query: 181 VMGDAS----LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           V+G+A+    L +T+I  P   FY YE KY+   S HVLPA++P  ++ +  R A LAH 
Sbjct: 190 VIGEATGPRALTITDI-TPTKGFYDYEAKYAPGGSRHVLPAELPPHVFDKALRQAELAHA 248

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           A+GCRG+SR+DF +D ++  +  LE+N QPGMTP S+ PE AA+ G  +REL+ WMVEDA
Sbjct: 249 AMGCRGVSRADFRYDDVNDVLVLLEVNTQPGMTPTSLVPEQAAFVGMDYRELVRWMVEDA 308

Query: 297 SCLR 300
           SC R
Sbjct: 309 SCPR 312


>gi|49474453|ref|YP_032495.1| D-alanine--D-alanine ligase [Bartonella quintana str. Toulouse]
 gi|81646935|sp|Q6FZ74|DDL_BARQU RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|49239957|emb|CAF26362.1| D-alanine--D-alanine ligase [Bartonella quintana str. Toulouse]
          Length = 306

 Score =  316 bits (809), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 160/301 (53%), Positives = 225/301 (74%), Gaps = 1/301 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSER VSLSSG ACA  LE  G++VS++DVD  +  VL  L+PD+AFN LHG
Sbjct: 6   VAVLMGGGSSERSVSLSSGTACADILEARGYRVSRVDVDSHIASVLERLQPDVAFNALHG 65

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG +Q +LE L+IPYTHSG++ASAL+MDK R+K VV+S GV V PS +++RF +  
Sbjct: 66  PFGEDGCIQGVLEYLKIPYTHSGVMASALAMDKGRAKIVVASVGVSVAPSCIMSRFAVGR 125

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +H + PPYVIKPL  GSS G++++K+++S P   +  + W + D++++E+Y+ G E TC 
Sbjct: 126 EHPMEPPYVIKPLCEGSSFGVVIVKENESAPPRNVVGAEWVYADEVIVEKYIPGREFTCA 185

Query: 181 VMGDASLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
           V+G+ +LDV EI   K   FY+Y+ KY S  S H+ PA++  +IY+ VQR++  AHQAIG
Sbjct: 186 VLGNEALDVCEIFPDKHFQFYNYDSKYKSGGSLHICPAQLSPNIYQNVQRMSLAAHQAIG 245

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
           CRG+SRSDF F+  + ++ WLEIN QPGMTP S+FP++A  +G ++ +++ WMVEDASC+
Sbjct: 246 CRGVSRSDFRFNEETGELVWLEINTQPGMTPTSLFPDIAKASGRTYGDIVQWMVEDASCM 305

Query: 300 R 300
           R
Sbjct: 306 R 306


>gi|299131921|ref|ZP_07025116.1| D-alanine/D-alanine ligase [Afipia sp. 1NLS2]
 gi|298592058|gb|EFI52258.1| D-alanine/D-alanine ligase [Afipia sp. 1NLS2]
          Length = 308

 Score =  315 bits (808), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 156/303 (51%), Positives = 211/303 (69%), Gaps = 4/303 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSEREVSL SG ACA+ALE  G++V+++DV R +  VLA LKPD+AF  LHG
Sbjct: 7   VAVLMGGWSSEREVSLRSGAACAAALESRGYRVTRVDVQRDIATVLAALKPDVAFMALHG 66

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LE + IPYTHSG+LAS+L+M K  +K V+++ GVPV   + ++R  +  
Sbjct: 67  RPGEDGTIQGVLETIGIPYTHSGVLASSLAMQKDLAKTVMATAGVPVAAGLTLSRTDIAK 126

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            H + PPYVIKP+  GSS+G+ ++ ++ + P   L    W+HG++LL+E+YV G ELTC 
Sbjct: 127 AHPMEPPYVIKPVADGSSVGVFIVTEEHAHPPQELFRDDWSHGERLLVEKYVAGRELTCA 186

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V+   + +VTEI VP   FY YE KYS   S HVLPA I   +Y+EV+RL   AH ++GC
Sbjct: 187 VIKGEASEVTEI-VPLLKFYDYEAKYSKGASKHVLPAPILPFVYQEVRRLTLAAHVSLGC 245

Query: 241 RGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           RG+SR+DF +D     +  +  LE+N QPGMT  S+ PE+A YAG +F EL+ WMVEDAS
Sbjct: 246 RGVSRADFRYDDRIEGTGGLVCLEVNTQPGMTETSLVPELAGYAGVAFDELVQWMVEDAS 305

Query: 298 CLR 300
             R
Sbjct: 306 LDR 308


>gi|209884387|ref|YP_002288244.1| D-alanine--D-alanine ligase B [Oligotropha carboxidovorans OM5]
 gi|226696390|sp|B6JB38|DDL_OLICO RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|209872583|gb|ACI92379.1| D-alanine--D-alanine ligase B [Oligotropha carboxidovorans OM5]
          Length = 308

 Score =  315 bits (806), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 155/303 (51%), Positives = 211/303 (69%), Gaps = 4/303 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSEREVSL SG ACA+ALE  G++V++IDV R +  VL +LKPD+A  +LHG
Sbjct: 7   VAVLMGGWSSEREVSLRSGAACAAALERKGYRVTRIDVQRDIATVLQNLKPDVALVMLHG 66

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LE L IPY+HSG+L+S+L+M K  +K V+++ GVPV   + + R  +  
Sbjct: 67  KPGEDGTIQGVLETLGIPYSHSGVLSSSLAMRKDLAKTVMATAGVPVAEGLTLTRAEIAK 126

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            H+++PPYVIKP+  GSS+G+ ++ +DQ+ P   L    W HG++LL+E+Y+ G ELTC 
Sbjct: 127 AHVMAPPYVIKPVADGSSVGVFIVTEDQAHPPQELFRDDWPHGEELLVEKYIAGRELTCA 186

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V+   + DV EI VP   FY YE KYS   S HVLPA +   +Y+EV+RL   AH A+GC
Sbjct: 187 VIKGEASDVIEI-VPLLKFYDYEAKYSKGASKHVLPAPVLPFVYQEVRRLTLAAHGALGC 245

Query: 241 RGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           RG+SR+DF +D     +  +  LE+N QPGMT  S+ PE+A YAG +F EL+ WMVEDAS
Sbjct: 246 RGVSRADFRYDDRIEGTGGLVCLEVNTQPGMTETSLVPELAGYAGVAFDELVQWMVEDAS 305

Query: 298 CLR 300
             R
Sbjct: 306 LDR 308


>gi|90424792|ref|YP_533162.1| D-alanine--D-alanine ligase [Rhodopseudomonas palustris BisB18]
 gi|122475818|sp|Q211U3|DDL_RHOPB RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|90106806|gb|ABD88843.1| D-alanine--D-alanine ligase [Rhodopseudomonas palustris BisB18]
          Length = 308

 Score =  310 bits (793), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 155/303 (51%), Positives = 209/303 (68%), Gaps = 4/303 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG SSEREVSL SGKACA ALE  G++V+++DV R++G VL  LKPD+A  +LHG
Sbjct: 7   VAVLLGGWSSEREVSLRSGKACADALERCGYQVTRVDVQRNIGTVLDQLKPDVALVMLHG 66

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LE L IPY+HSG+LASAL+M K  +K V+++ GVPV   + ++R  +  
Sbjct: 67  RPGEDGTIQGVLETLGIPYSHSGVLASALAMQKDLAKTVMATAGVPVAEGLTLSRAEVAK 126

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +H+++PPYVIKP+  GSS+G+ ++ +    P   L    W HG+QLL+E+YV G ELTC 
Sbjct: 127 RHVMAPPYVIKPVADGSSVGVFMVTEAHEHPPQELFRDDWPHGEQLLVEKYVAGKELTCA 186

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V+      V EI V  + FY YE KYS   S H+LPA +   +Y+EV+RL   AH A+GC
Sbjct: 187 VVKGEPTGVIEI-VQTNKFYDYEAKYSPGGSNHILPASLLPFVYQEVRRLTLAAHVALGC 245

Query: 241 RGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           RG+SR+DF FD     +  +  LE+N QPGMT  S+ PE+AA AG +F EL+ WMVEDAS
Sbjct: 246 RGVSRADFRFDDRIEGTAGLICLEVNTQPGMTETSLVPELAADAGITFDELVQWMVEDAS 305

Query: 298 CLR 300
             R
Sbjct: 306 LGR 308


>gi|114570624|ref|YP_757304.1| D-alanine--D-alanine ligase [Maricaulis maris MCS10]
 gi|122315584|sp|Q0AMX1|DDL_MARMM RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|114341086|gb|ABI66366.1| D-alanine--D-alanine ligase [Maricaulis maris MCS10]
          Length = 304

 Score =  310 bits (793), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 152/301 (50%), Positives = 201/301 (66%), Gaps = 2/301 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG+S ER+VSL +G ACA  L DAG++V +ID  R +   LA   PD+ FN LHG
Sbjct: 5   IAVLMGGLSPERDVSLVTGAACAKGLRDAGYEVVEIDAGRHLSQQLADADPDVVFNALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDGLVQ +LE    PYTHSG+LASAL+MDK ++K V+ + G+P    I+ NRF    
Sbjct: 65  EWGEDGLVQGVLEHFGKPYTHSGVLASALAMDKQKAKDVLRAAGIPCPEGIIANRFEAAK 124

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            H++ PPYV KP   GSS+G+ ++ +  + P   L S++W  GD++LIE+YV G ELT  
Sbjct: 125 AHVMKPPYVAKPNAQGSSVGVHIVLEGANRPPAELGSTAWALGDEILIERYVPGRELTVA 184

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           VM D +L VTEI  P + FY YE KY++  S H+LPA I  +I +    LA  AH+A+GC
Sbjct: 185 VMEDRALCVTEIK-PNTTFYDYEAKYTAGGSDHILPAPISAEIAELAMDLAVRAHRALGC 243

Query: 241 RGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
           RG++RSDF +D  +    W LEIN QPGMTP S+ PE A Y G  F +L+ WM E+ASC 
Sbjct: 244 RGMTRSDFRYDSAADTPLWLLEINTQPGMTPTSLAPEQAQYCGIEFSDLVAWMAENASCR 303

Query: 300 R 300
           R
Sbjct: 304 R 304


>gi|302383797|ref|YP_003819620.1| D-alanine/D-alanine ligase [Brevundimonas subvibrioides ATCC 15264]
 gi|302194425|gb|ADL01997.1| D-alanine/D-alanine ligase [Brevundimonas subvibrioides ATCC 15264]
          Length = 311

 Score =  309 bits (791), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 153/304 (50%), Positives = 210/304 (69%), Gaps = 6/304 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG+SSER+VSLSSGK CA ALE  G +V+++D  R +  VLA LKPD+  N LHG
Sbjct: 10  VAVLLGGLSSERDVSLSSGKGCADALEAQGARVTRVDAGRDLAQVLAELKPDVVLNALHG 69

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG VQ ILE L+IPYTHSG+LASAL+MDK ++K V+++ GV V    L +R  + +
Sbjct: 70  EWGEDGCVQGILETLQIPYTHSGVLASALTMDKDKTKAVLNAAGVKVPGGGLFDRHAVSA 129

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            H+I PPYVIKP   GSS+G+ ++++  + P     S SW +GD +++E Y+ G EL   
Sbjct: 130 GHVIPPPYVIKPNAEGSSVGVYLVREGDA-PQPEPGSDSWTYGDLVMVEPYIPGKELAVA 188

Query: 181 VMGDAS----LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           V+G+A+    L VT+I  P   FY YE KY+   S H LPA +P  +++   R +  AH 
Sbjct: 189 VIGEATGPRALTVTDI-TPVKGFYDYEAKYAPGGSVHKLPADLPPHVFEAAMRESEQAHA 247

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           A+GCRG+SRSDF +D +  ++  LE+N QPGMTP S+ PE AAY G S+++L+ WMVEDA
Sbjct: 248 ALGCRGVSRSDFRYDDVKDELVLLEVNTQPGMTPTSLVPEQAAYCGMSYQDLVRWMVEDA 307

Query: 297 SCLR 300
           SC R
Sbjct: 308 SCPR 311


>gi|115524126|ref|YP_781037.1| D-alanine--D-alanine ligase [Rhodopseudomonas palustris BisA53]
 gi|122296540|sp|Q07PS7|DDL_RHOP5 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|115518073|gb|ABJ06057.1| D-alanine--D-alanine ligase [Rhodopseudomonas palustris BisA53]
          Length = 308

 Score =  307 bits (787), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 158/303 (52%), Positives = 205/303 (67%), Gaps = 4/303 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG SSEREVSL SG ACA ALE  GF+V++IDV R +  VL  L+PD A  +LHG
Sbjct: 7   VAVLLGGWSSEREVSLRSGNACADALERRGFEVTRIDVARDIATVLDQLRPDSALMMLHG 66

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
           + GEDG +Q +LE L IPY+HSG+LASAL+M K  +K V+ + GVPV   + ++R  +  
Sbjct: 67  HPGEDGSIQGVLETLAIPYSHSGVLASALAMQKDLAKTVMKTAGVPVAEGLTLSRDEIAR 126

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            H++ PPYVIKP+  GSS+G+ +I +    P   L    W +GD+LL+E+YV G ELTC 
Sbjct: 127 GHVMEPPYVIKPVADGSSVGVYIITEQHQHPPQELFRDDWAYGDKLLVEKYVAGKELTCA 186

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V+     DV EI VP   FY YE KYS   S HVLPA +   +Y+EV+RL   AH A+GC
Sbjct: 187 VVKGEPTDVIEI-VPMVRFYDYEAKYSPGASKHVLPASLLPFVYQEVRRLTLAAHVALGC 245

Query: 241 RGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           RG+SR+DF FD     +  +  LE+N QPGMT  S+ PE+AAYAG +F EL+ WMVEDAS
Sbjct: 246 RGVSRADFRFDDRIEGTGGLVCLEVNTQPGMTETSLVPELAAYAGITFDELVQWMVEDAS 305

Query: 298 CLR 300
             R
Sbjct: 306 LDR 308


>gi|254418986|ref|ZP_05032710.1| D-ala D-ala ligase N-terminal domain protein, putative
           [Brevundimonas sp. BAL3]
 gi|196185163|gb|EDX80139.1| D-ala D-ala ligase N-terminal domain protein, putative
           [Brevundimonas sp. BAL3]
          Length = 313

 Score =  304 bits (779), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 152/305 (49%), Positives = 207/305 (67%), Gaps = 6/305 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL-KPDLAFNVLH 59
           +AVLMGG+S+EREVSL+SG+ CA ALE  G +VS++D  R +  VL+ L KPD+  N LH
Sbjct: 10  VAVLMGGLSAEREVSLTSGEQCAQALERQGVRVSRVDAGRDLANVLSGLIKPDVVLNCLH 69

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G +GEDG VQ +LE L IPYTHSG+LASAL+MDK RSK V+ + GV V    L +R  + 
Sbjct: 70  GAWGEDGCVQGVLETLRIPYTHSGVLASALAMDKNRSKAVLKAAGVKVPGGGLYDRHEVA 129

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
           S+H+I PPYV+KP   GSS+G+ ++ +  + P+  +    W +G+Q+++E Y+ G EL  
Sbjct: 130 SRHVIEPPYVVKPNAEGSSVGVYLVSEGANRPVAEVGEPGWAYGEQVMVEPYIAGKELAV 189

Query: 180 GVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
            V+G A    +L VT+I  P   FY YE KY+   S HVLPA +P  +++   R A  AH
Sbjct: 190 AVIGYADGPRALTVTDI-TPTKGFYDYEAKYAPGGSVHVLPAVLPPAVFEAALRQAEAAH 248

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
            A+GCRG+SRSDF +D +   +  LE+N QPGMTP S+ PE AA+ G S+ +L+ WMVED
Sbjct: 249 VAMGCRGVSRSDFRYDDVKDDLVLLEVNTQPGMTPTSLAPEQAAHTGMSYEDLVRWMVED 308

Query: 296 ASCLR 300
           ASC R
Sbjct: 309 ASCPR 313


>gi|209963942|ref|YP_002296857.1| D-alanine--D-alanine ligase B [Rhodospirillum centenum SW]
 gi|209957408|gb|ACI98044.1| D-alanine--D-alanine ligase B [Rhodospirillum centenum SW]
          Length = 315

 Score =  295 bits (756), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 145/303 (47%), Positives = 210/303 (69%), Gaps = 8/303 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL--KPDLAFNVL 58
           +AVLMGG S+ER+VSL SG++ A+ALE+ G+ V+ +DV R +  +L  L  KPD+ FN L
Sbjct: 14  VAVLMGGWSAERDVSLVSGRSVAAALEERGYAVTAVDVQRDLPALLHALTPKPDVVFNAL 73

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
           HG  GEDGL+Q +LE L +PYTHSG+LASAL+M+K  +++V+++ GVPV   + V R  +
Sbjct: 74  HGRGGEDGLIQGVLEYLGVPYTHSGVLASALAMNKEMTRRVLAAVGVPVPDGVTVTREQI 133

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            + H I PPYV+KP+  GSS+G+ +++  Q+    +L+   W +G+++L+E+++ G ELT
Sbjct: 134 LAGHPIEPPYVVKPVDEGSSVGVRIVRPGQN--QSVLEEGGWAYGERVLVERFIPGRELT 191

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
            GVMGD +L VTEI VP+S F+ Y  KY+   + HV PA+IP D+ +E  RLA LAH+ +
Sbjct: 192 VGVMGDRALAVTEI-VPRSGFFDYAAKYTEGEAVHVCPAQIPQDVQEEALRLALLAHRTL 250

Query: 239 GCRGISRSDFLFD---PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           GC G+SRSDF +D     +  +++LE N QPG T +S+ PE AA  G  F EL  W+VE 
Sbjct: 251 GCSGVSRSDFRWDDSQAGTGGLYFLETNTQPGFTALSLLPEQAASQGIGFAELCAWIVEQ 310

Query: 296 ASC 298
           A C
Sbjct: 311 ARC 313


>gi|77462663|ref|YP_352167.1| D-alanine--D-alanine ligase [Rhodobacter sphaeroides 2.4.1]
 gi|126461556|ref|YP_001042670.1| D-alanine--D-alanine ligase [Rhodobacter sphaeroides ATCC 17029]
 gi|123592597|sp|Q3J4L8|DDL_RHOS4 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|190359209|sp|A3PHT2|DDL_RHOS1 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|77387081|gb|ABA78266.1| D-alanine--D-alanine ligase [Rhodobacter sphaeroides 2.4.1]
 gi|126103220|gb|ABN75898.1| D-alanine--D-alanine ligase [Rhodobacter sphaeroides ATCC 17029]
          Length = 307

 Score =  295 bits (755), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 148/302 (49%), Positives = 200/302 (66%), Gaps = 8/302 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG S+EREVSLSSG +C++AL DAG++V+++D    +  VLA L PD  FN LHG
Sbjct: 12  VAVLMGGASTEREVSLSSGHSCSAALRDAGYEVTEVDAGPDLARVLAELSPDAVFNALHG 71

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG VQ +LE L IPYTHSG+LASAL+MDK R+K+V ++ G+PV  S+L     + +
Sbjct: 72  RWGEDGCVQGLLEWLRIPYTHSGVLASALAMDKARAKEVFAAAGLPVTQSVLATPEEVRA 131

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +H++ PPYV+KP   GSS+G+ ++ +D + P  L      +    L++E YV G ELT  
Sbjct: 132 RHILPPPYVVKPNAEGSSVGVYIVHEDANGPPQLAA----DMPQDLMVETYVPGRELTVT 187

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           VMGD  L VT+I      +Y Y+ KY    S H++PA +P +I +    +A  AH+A+GC
Sbjct: 188 VMGDRVLAVTDIL--SDGWYDYDAKYRPGGSRHIVPADLPAEITEACHDIALRAHRALGC 245

Query: 241 RGISRSDFLFDPLS--RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           RGISRSD  +D       +  LE N QPGMTP S+ PE AA+ GYSF E   W+VEDASC
Sbjct: 246 RGISRSDLRWDEARGLAGLILLETNTQPGMTPTSLSPEQAAHCGYSFPEFCAWLVEDASC 305

Query: 299 LR 300
            R
Sbjct: 306 SR 307


>gi|114799909|ref|YP_759123.1| D-alanine--D-alanine ligase [Hyphomonas neptunium ATCC 15444]
 gi|122942769|sp|Q0C570|DDL_HYPNA RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|114740083|gb|ABI78208.1| D-alanine--D-alanine ligase [Hyphomonas neptunium ATCC 15444]
          Length = 306

 Score =  295 bits (754), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 141/300 (47%), Positives = 201/300 (67%), Gaps = 1/300 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AV+ GG SSER VSLSSG+  A+A   AG+ V++IDV R +   LA  +PD+  N LHG
Sbjct: 8   VAVIYGGWSSERPVSLSSGQQMAAAARKAGYDVTEIDVTRELASQLAEAEPDVVLNGLHG 67

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG VQ +LE++ +PY+HSG+LASAL+MDK++SK V  S G+ V     V R    +
Sbjct: 68  PWGEDGCVQGLLEVMGLPYSHSGVLASALAMDKLKSKAVYRSAGLDVAADKRVTRAEAAA 127

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            H + PPYV+KP+  GSS G++++++  + P   L   +W +GD L+ E+Y+ G ELT  
Sbjct: 128 AHALPPPYVVKPVNEGSSFGVLIVREGANGPPHELTGPNWRYGDYLMAEEYIPGRELTVA 187

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V+GD +L VTEI   + D+Y ++ KY++  S HV+PA +P  + +     A LAH+A+GC
Sbjct: 188 VLGDRALAVTEITTLR-DYYDFDAKYAAGGSRHVIPADLPAKVTEAAMDAALLAHRALGC 246

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           RG +RSDF +D    ++  LE N QPGMTP S+ PE AA+ G SF +L+ WM+EDASC R
Sbjct: 247 RGATRSDFRYDEQKDRLVILETNTQPGMTPTSLVPEQAAHMGMSFEDLVAWMIEDASCQR 306


>gi|254292779|ref|YP_003058802.1| D-alanine/D-alanine ligase [Hirschia baltica ATCC 49814]
 gi|254041310|gb|ACT58105.1| D-alanine/D-alanine ligase [Hirschia baltica ATCC 49814]
          Length = 302

 Score =  294 bits (753), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 140/300 (46%), Positives = 200/300 (66%), Gaps = 1/300 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AV+MGG SSEREVSLSSG+  A A  + GF V +ID+ R +   L    PD+  N LHG
Sbjct: 4   VAVIMGGWSSEREVSLSSGRGMAQAARNEGFDVVEIDITRDLSNQLKEANPDVVLNALHG 63

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG VQ +LE+LEIPY+HSG+LASAL+MDK +S+ V +  G+ V    +  +  + +
Sbjct: 64  PYGEDGCVQGLLEILEIPYSHSGVLASALAMDKAKSRNVYARMGLLVAEGGVYAKEDVAA 123

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +H++ PPYV+KP+  GSS G++++ +  + P   L    W  GD +L+EQ++ G ELT  
Sbjct: 124 EHVMKPPYVVKPIAEGSSFGVLIVPEGANRPPAELLDPKWGFGDSVLVEQFIPGRELTVS 183

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           VMG+ +L VTEI   + D+Y Y  KY +  S HV+PA+I   + +     A +AH A+GC
Sbjct: 184 VMGNEALAVTEITTLR-DYYDYSAKYEAGGSKHVIPAEISDAVTQAALDAALIAHDALGC 242

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           RG+SRSDF +D  ++++  LE N QPGMTP S+ PE AA+ G S+ +L+ WM+EDASC R
Sbjct: 243 RGVSRSDFRYDDDTKRLVILETNTQPGMTPTSLVPEQAAHKGISYEKLVRWMIEDASCHR 302


>gi|300021781|ref|YP_003754392.1| D-alanine/D-alanine ligase [Hyphomicrobium denitrificans ATCC
           51888]
 gi|299523602|gb|ADJ22071.1| D-alanine/D-alanine ligase [Hyphomicrobium denitrificans ATCC
           51888]
          Length = 317

 Score =  294 bits (752), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 150/306 (49%), Positives = 206/306 (67%), Gaps = 9/306 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG+S+ER+VSL+SG A   AL + G++V++IDVDR++   L  + PD+ FN LHG
Sbjct: 15  VAVLKGGLSAERDVSLNSGAAVGEALREEGYRVTEIDVDRNLAAQLEAINPDVCFNALHG 74

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG VQ +LE+L IPYTHSG+LASAL+M K R+K ++   GV V  + LV R     
Sbjct: 75  KFGEDGCVQGVLEMLAIPYTHSGVLASALAMHKERAKDIMKLAGVAVAEAKLVTRREAAE 134

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQL-LIEQYVDGIELTC 179
            H++ PPYV+KP   GSS+G++++      P   +  +S    DQ+ ++E+YV G ELTC
Sbjct: 135 AHVLPPPYVVKPPTEGSSVGVVIVPPGADRPPSSI--ASGGSPDQIVMVERYVPGRELTC 192

Query: 180 GVMGDASLDVTEIAVPKSD--FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
            V+GD   DV EI VP     FY YE KY +  S H LPA++  D+Y+ V+ L   AHQA
Sbjct: 193 AVIGDFVTDVIEI-VPLRGLAFYDYESKYGAGGSKHELPAQLLPDVYQSVRSLTLRAHQA 251

Query: 238 IGCRGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           +GCRG+SR+DF FD     + ++  LE+N QPGMT  S+ PE+A +AG+SF +L+ WMVE
Sbjct: 252 LGCRGVSRADFRFDDTAGGTGELICLEVNTQPGMTGTSLVPELAGHAGWSFGDLVRWMVE 311

Query: 295 DASCLR 300
           DASC R
Sbjct: 312 DASCNR 317


>gi|221638520|ref|YP_002524782.1| D-alanine--D-alanine ligase [Rhodobacter sphaeroides KD131]
 gi|221159301|gb|ACM00281.1| D-alanine--D-alanine ligase [Rhodobacter sphaeroides KD131]
          Length = 294

 Score =  294 bits (752), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 149/301 (49%), Positives = 200/301 (66%), Gaps = 10/301 (3%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62
           +LMGG S+EREVSLSSG +C++AL DAG++V+++D    +  VLA L PD  FN LHG +
Sbjct: 1   MLMGGASTEREVSLSSGHSCSAALRDAGYEVTEVDAGPDLARVLAELSPDAVFNALHGRW 60

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
           GEDG VQ +LE L IPYTHSG+LASAL+MDK R+K+V ++ G+PV  S+L     + ++H
Sbjct: 61  GEDGCVQGLLEWLRIPYTHSGVLASALAMDKARAKEVFAAAGLPVTQSVLATPEEVRARH 120

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
           ++ PPYV+KP   GSS+G+ ++ +D + P  L      N    L++E YV G ELT  VM
Sbjct: 121 ILPPPYVVKPNAEGSSVGVYIVHEDANGPPQLAADMPQN----LMVETYVPGRELTVTVM 176

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
           GD  L VT+I      +Y Y+ KY    S H++PA +P +I +    +A  AH+A+GCRG
Sbjct: 177 GDRVLAVTDIL--SDGWYDYDAKYRPGGSRHIVPADLPAEITEACHDIALRAHRALGCRG 234

Query: 243 ISRSDFLFDPLSR---KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
           ISRSD  +D  SR    +  LE N QPGMTP S+ PE AA+ GYSF E   W+VEDASC 
Sbjct: 235 ISRSDLRWDE-SRGLAGLILLETNTQPGMTPTSLSPEQAAHCGYSFPEFCAWLVEDASCS 293

Query: 300 R 300
           R
Sbjct: 294 R 294


>gi|197105779|ref|YP_002131156.1| D-alanine--D-alanine ligase B [Phenylobacterium zucineum HLK1]
 gi|196479199|gb|ACG78727.1| D-alanine--D-alanine ligase B [Phenylobacterium zucineum HLK1]
          Length = 325

 Score =  293 bits (751), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 142/296 (47%), Positives = 206/296 (69%), Gaps = 1/296 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG+SSEREVSL SG+ CA ALE  G KVS+ID  R +  VL+ LKPD+ FN LHG
Sbjct: 10  VAVLMGGLSSEREVSLVSGRECADALERLGAKVSRIDAGRDLAQVLSALKPDVCFNALHG 69

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG VQ +LE L IPYTHSG+LASAL+MDK ++K V+++ GVPV    L NR+ +  
Sbjct: 70  AWGEDGCVQGVLETLAIPYTHSGVLASALAMDKAKAKAVLAAAGVPVPGGGLYNRYDVAR 129

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +H+++PPYV+K    GSS+G+ +++   + P   +   SW +G+Q+++E ++ G+EL  G
Sbjct: 130 EHVMAPPYVVKANAEGSSVGVFIVRDRANRPPQEILEPSWTYGEQVMVEPFIRGMELAVG 189

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           VM   +++VTEI + + +FY YE KY+   S H++PA++P    ++ +  +  AH A+GC
Sbjct: 190 VMDGKAMEVTEI-LTEREFYDYEAKYAEGGSKHIVPARMPAHALEKAKEYSERAHAALGC 248

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           RG++RSD  +D ++  +  LE+N QPGMTP S+ PE AA  G  F  L+LW+ EDA
Sbjct: 249 RGVTRSDLRYDDINDILVLLEVNTQPGMTPTSLVPEQAAAQGVDFDRLVLWITEDA 304


>gi|332557545|ref|ZP_08411867.1| D-alanine--D-alanine ligase [Rhodobacter sphaeroides WS8N]
 gi|332275257|gb|EGJ20572.1| D-alanine--D-alanine ligase [Rhodobacter sphaeroides WS8N]
          Length = 294

 Score =  293 bits (749), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 147/300 (49%), Positives = 198/300 (66%), Gaps = 8/300 (2%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62
           +LMGG S+EREVSLSSG +C++AL DAG++V+++D    +  VLA L PD  FN LHG +
Sbjct: 1   MLMGGASTEREVSLSSGHSCSAALRDAGYEVTEVDAGPDLARVLAELSPDAVFNALHGRW 60

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
           GEDG VQ +LE L IPYTHSG+LASAL+MDK R+K+V ++ G+PV  S+L     + ++H
Sbjct: 61  GEDGCVQGLLEWLRIPYTHSGVLASALAMDKARAKEVFAAAGLPVTQSVLATPEEVRARH 120

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
           L+ PPYV+KP   GSS+G+ ++ +D + P  L      +    L++E YV G ELT  VM
Sbjct: 121 LLPPPYVVKPNAEGSSVGVYIVHEDANGPPQLAA----DMPQDLMVETYVPGRELTVTVM 176

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
           GD  L VT+I      +Y Y+ KY    S H++PA +P +I +    +A  AH+A+GCRG
Sbjct: 177 GDRVLAVTDIL--SDGWYDYDAKYRPGGSRHIVPADLPAEITEACHDIALRAHRALGCRG 234

Query: 243 ISRSDFLFDPLS--RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           ISRSD  +D       +  LE N QPGMTP S+ PE AA+ GYSF E   W+VEDASC R
Sbjct: 235 ISRSDLRWDEARGLAGLILLETNTQPGMTPTSLSPEQAAHCGYSFPEFCAWLVEDASCSR 294


>gi|146276749|ref|YP_001166908.1| D-alanine--D-alanine ligase [Rhodobacter sphaeroides ATCC 17025]
 gi|190359210|sp|A4WQD9|DDL_RHOS5 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|145554990|gb|ABP69603.1| D-alanine--D-alanine ligase [Rhodobacter sphaeroides ATCC 17025]
          Length = 307

 Score =  291 bits (746), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 147/302 (48%), Positives = 201/302 (66%), Gaps = 8/302 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSEREVSLSSG +C++AL DAG++V+++D    +  VLA ++PD  FN LHG
Sbjct: 12  VAVLMGGTSSEREVSLSSGHSCSAALRDAGYEVTEVDAGPDLARVLAEVQPDAVFNALHG 71

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG VQ +LE L IPYTHSG+LASAL+MDK R+K+V ++ G+PV  S++     + +
Sbjct: 72  RWGEDGCVQGLLEWLRIPYTHSGVLASALAMDKARAKEVFAAAGLPVTQSVIATPDEVQA 131

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            H++ PPYV+KP   GSS+G+ +++ D + P  L      +    L++E Y+ G ELT  
Sbjct: 132 GHVLPPPYVVKPNCEGSSVGVYIVQADANGPPRLAP----DMPRDLMVETYIPGRELTVT 187

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           VMGD +L VT+I      +Y Y+ KY    S HV+PA++P +I      +A  AH+A+GC
Sbjct: 188 VMGDRALAVTDIVT--DGWYDYDAKYRPGGSRHVVPAELPAEITDACLDIALRAHRALGC 245

Query: 241 RGISRSDFLFDPL--SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           RGISRSD  +D    +  +  LE N QPGMTP S+ PE AA+ G SF E   WMVEDASC
Sbjct: 246 RGISRSDLRWDESRGAEGLILLETNTQPGMTPTSLSPEQAAHCGLSFPEFCAWMVEDASC 305

Query: 299 LR 300
            R
Sbjct: 306 NR 307


>gi|83858912|ref|ZP_00952434.1| D-alanine--D-alanine ligase B [Oceanicaulis alexandrii HTCC2633]
 gi|83853735|gb|EAP91587.1| D-alanine--D-alanine ligase B [Oceanicaulis alexandrii HTCC2633]
          Length = 304

 Score =  291 bits (745), Expect = 7e-77,   Method: Compositional matrix adjust.
 Identities = 145/299 (48%), Positives = 198/299 (66%), Gaps = 2/299 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-DRSVGLVLAHLKPDLAFNVLH 59
           +AVL+GG S ER+VSL SG+    ALE  G++VS ID  D      L  +KPD+ FN LH
Sbjct: 5   VAVLLGGRSPERDVSLVSGRKVIEALEAKGYQVSPIDPRDHDWIDQLDGVKPDVVFNALH 64

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G++GEDG VQ +L+ L  PYTHSG+ ASAL+MDK R+K V+   G+      L++RF   
Sbjct: 65  GDWGEDGRVQGVLDYLGYPYTHSGVAASALAMDKQRAKAVLREAGIQCPEGQLISRFEAA 124

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
             H++ PPYV KP   GSS+G++++ +  + P  +L S  W + +++LIE+++ G ELT 
Sbjct: 125 RDHVMKPPYVAKPNAQGSSVGVVIVPEGANRPPAILGSEDWPYDEEVLIERFIPGRELTV 184

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
            VMGD  L VTEI VPK+ FY Y+ KYS   S H LPA +P  ++ E    A  AHQ +G
Sbjct: 185 AVMGDKPLTVTEI-VPKTAFYDYDAKYSDGGSVHQLPADVPQAVFDECMAEALKAHQVLG 243

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           CRG++RSDF +DP +  V+ LEIN QPGMTP S+ PE AA+ G  F +L+ WMVE+A+C
Sbjct: 244 CRGLTRSDFRYDPETGGVWLLEINTQPGMTPTSLAPEQAAHCGIGFPDLVAWMVENAAC 302


>gi|310814886|ref|YP_003962850.1| D-alanine--D-alanine ligase [Ketogulonicigenium vulgare Y25]
 gi|308753621|gb|ADO41550.1| D-alanine--D-alanine ligase [Ketogulonicigenium vulgare Y25]
          Length = 292

 Score =  291 bits (745), Expect = 8e-77,   Method: Compositional matrix adjust.
 Identities = 148/298 (49%), Positives = 193/298 (64%), Gaps = 8/298 (2%)

Query: 5   MGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGE 64
           MGG S+EREVSLSSG+ CA AL +AG+ V ++D D ++   LAH+KPD+ FN LHG +GE
Sbjct: 1   MGGFSAEREVSLSSGRECAKALVEAGYDVVEVDADATLVDRLAHVKPDVVFNALHGRWGE 60

Query: 65  DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI 124
           DG VQ ILE L IPYTHSG+LASAL+MDK R+K    + G+PV PS+L  R  +  +H++
Sbjct: 61  DGCVQGILEWLRIPYTHSGVLASALAMDKQRTKSTYQAAGLPVVPSLLAARDEVSQRHMM 120

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
             PYV+KP   GSS+G+ ++    + P  L    S    D +++E Y  G ELT  V+GD
Sbjct: 121 DAPYVVKPANEGSSVGVYIVHAGANRPPQL----SPEMPDVVMVEAYAAGRELTTAVLGD 176

Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244
            +L VT+I      +Y Y  KYS   S H +PA IP+ IY      A  AH+A+GCRG+S
Sbjct: 177 RALTVTDIIT--DGWYDYNAKYSVGGSRHEIPANIPVQIYDACMDYALRAHRALGCRGLS 234

Query: 245 RSDFLFDPLS--RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           R+DF +D       +  LE N QPGMTP S+ PE AA+AG SF EL  W+VEDASC R
Sbjct: 235 RTDFRWDETRGLDGLILLETNTQPGMTPTSLAPEQAAWAGISFPELCRWLVEDASCGR 292


>gi|16126782|ref|NP_421346.1| D-alanine--D-alanine ligase B [Caulobacter crescentus CB15]
 gi|221235562|ref|YP_002517999.1| D-alanine--D-alanine ligase [Caulobacter crescentus NA1000]
 gi|22095565|sp|Q9A5A9|DDL_CAUCR RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|13424106|gb|AAK24514.1| D-alanine--D-alanine ligase B [Caulobacter crescentus CB15]
 gi|220964735|gb|ACL96091.1| D-alanine--D-alanine ligase [Caulobacter crescentus NA1000]
          Length = 324

 Score =  290 bits (741), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 149/300 (49%), Positives = 205/300 (68%), Gaps = 5/300 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG SSER+VSL SG ACA ALE  G KVS+ID    V  VLA  KPD+ FN LHG
Sbjct: 16  IAVLLGGPSSERKVSLVSGAACAEALERLGAKVSRIDPGPDVAQVLAATKPDMVFNALHG 75

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG VQ +LE L++PYTHSG+LASAL+MDK ++K V+++ GV V    L NR  +  
Sbjct: 76  EWGEDGCVQGVLETLKLPYTHSGVLASALAMDKAKAKAVLAAAGVTVPGGGLFNRHDVAR 135

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            H++ PPYV+KP   GSS+G+ +IK+  + P + + + SW  G+++++E Y+ G+EL   
Sbjct: 136 DHVLQPPYVVKPNAEGSSVGVFIIKEGANRPPEEVGAPSWTFGEEVMVEPYIQGMELAVA 195

Query: 181 VMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           V+G++    +L VT+I    + FY YE KYS   S HVLPA IP  +     R+A LAH 
Sbjct: 196 VLGESNGPRALAVTDIRA-STGFYDYEAKYSEGGSIHVLPAPIPNAVRDRAMRMAELAHT 254

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           A+GCRG++RSDF +D ++  +  LE+N QPGMTP S+ PE A + G  F +L+LW+VEDA
Sbjct: 255 ALGCRGVTRSDFRYDDINDLLVLLEVNTQPGMTPTSLAPEQADHVGIPFDQLVLWIVEDA 314


>gi|254467284|ref|ZP_05080695.1| D-alanine--D-alanine ligase [Rhodobacterales bacterium Y4I]
 gi|206688192|gb|EDZ48674.1| D-alanine--D-alanine ligase [Rhodobacterales bacterium Y4I]
          Length = 294

 Score =  288 bits (737), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 147/300 (49%), Positives = 198/300 (66%), Gaps = 8/300 (2%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62
           +LMGG S+EREVSLSSG+ CA+AL   GF+V ++D  R +   LA +KPD+ FN LHG +
Sbjct: 1   MLMGGPSAEREVSLSSGRECAAALRGEGFEVVEVDAGRDLHARLAEVKPDVVFNALHGRW 60

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
           GEDG VQ +LE L IPYTHSG+LASAL+MDK RSK+V  S G+PV  S L  +  + + H
Sbjct: 61  GEDGCVQGLLEWLGIPYTHSGVLASALAMDKQRSKEVYRSAGLPVVESGLFAKEDVTAGH 120

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
           +++PPYV+KP   GSS+GI ++ +  + P  L ++       Q+++E Y  G ELT  V+
Sbjct: 121 VMAPPYVVKPNNEGSSVGIYIVHEAANGPPQLSEAMP----QQVMVETYAPGRELTTTVI 176

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
           GD +L VT+I      +Y Y+ KY    S HVLPA +P +I+      A  AH+A+GCRG
Sbjct: 177 GDRALTVTDILT--DGWYDYDAKYKPGGSRHVLPADLPREIHDLCLEYALKAHEALGCRG 234

Query: 243 ISRSDFLFDPL--SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           +SR+DF +D    +  +  LE N QPGMTP S+ PE AA+ G SF +L  WMVEDASC R
Sbjct: 235 VSRTDFRWDETRGASGLVLLETNTQPGMTPTSLVPEQAAFCGMSFGQLCAWMVEDASCNR 294


>gi|254509513|ref|ZP_05121580.1| D-alanine--D-alanine ligase [Rhodobacteraceae bacterium KLH11]
 gi|221533224|gb|EEE36212.1| D-alanine--D-alanine ligase [Rhodobacteraceae bacterium KLH11]
          Length = 297

 Score =  287 bits (734), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 148/302 (49%), Positives = 201/302 (66%), Gaps = 7/302 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           MAVLMGG S+EREVSLSSG+ CA+AL   GF+V ++D    +   L  +KPD+ FN LHG
Sbjct: 1   MAVLMGGPSAEREVSLSSGRECAAALVGEGFEVVELDAGPDLYARLLDIKPDVVFNALHG 60

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG VQ +LE + IPYTHSG+L+SAL+MDK RSK++  + G+P+ PS++V +  +  
Sbjct: 61  RWGEDGCVQGLLEWMRIPYTHSGVLSSALAMDKQRSKEIYQTEGLPIVPSVIVPKVEVVV 120

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            H++ PPYV KP   GSS+GI ++ ++ + P  L  +      D +++E+YV G ELT  
Sbjct: 121 AHVMEPPYVAKPNNEGSSVGIYIVHENANGPPQLDAAMP----DHVMVEKYVAGRELTVT 176

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           VMGD +L VTEI +    +Y Y+ KY    S HVLPA IP DI+      A  AH A+GC
Sbjct: 177 VMGDRALTVTEI-MTDGGWYDYDAKYKPGGSWHVLPADIPQDIFDRCMDYALKAHDALGC 235

Query: 241 RGISRSDFLFDPL--SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           RG++R+D+ +D    +  +F LE N QPGMTP S+ PE AA+ G SF +L  WMVEDASC
Sbjct: 236 RGVTRTDYRWDDSMGADGLFLLETNTQPGMTPTSLVPEQAAHIGMSFGQLCAWMVEDASC 295

Query: 299 LR 300
            R
Sbjct: 296 DR 297


>gi|83592283|ref|YP_426035.1| D-alanine--D-alanine ligase [Rhodospirillum rubrum ATCC 11170]
 gi|123767104|sp|Q2RVU7|DDL_RHORT RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|83575197|gb|ABC21748.1| D-alanine--D-alanine ligase [Rhodospirillum rubrum ATCC 11170]
          Length = 302

 Score =  283 bits (723), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 138/302 (45%), Positives = 199/302 (65%), Gaps = 10/302 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL---KPDLAFNV 57
           + VLMGG S+ER VSL+SG A   AL  AG+ V+ +DV R V   +A L   +PD+ FN 
Sbjct: 5   VTVLMGGFSTERAVSLNSGAAAGEALRQAGYAVTLLDVGRDVAAFIAALTQTRPDVVFNA 64

Query: 58  LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117
           LHG FGEDG +Q IL+++ +PYTHSG LASA++MDK  +K V     +PV P ++ +R +
Sbjct: 65  LHGRFGEDGAIQGILDIMALPYTHSGRLASAIAMDKPSAKLVFERFAIPVAPHVVADRAS 124

Query: 118 MDSQHLISPPYVIKPLKGGSSLGI-IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
           + ++  ++ PYV+KPL  GSS+G+ IV  +   +P        W +G Q+++E+++ G E
Sbjct: 125 VLAETAMARPYVVKPLDQGSSVGVTIVTSETNDLP---FSRDDWPYGRQVMVERFIPGRE 181

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           LT GVMGD +L VTEI V    FY Y+ KY+   S H++PA +  +++ + Q L+ LAHQ
Sbjct: 182 LTVGVMGDKALGVTEI-VTDHRFYDYDAKYAQGGSRHIVPAPVAPEVFAQAQELSVLAHQ 240

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           A+GCRG+SR+D  FD     ++ LE+N QPGMT  S+ PE A +AG SF +L+ W+VE A
Sbjct: 241 ALGCRGVSRADLRFD--GETLYMLEVNTQPGMTDTSLVPEQALHAGISFPDLVTWLVETA 298

Query: 297 SC 298
            C
Sbjct: 299 QC 300


>gi|260434243|ref|ZP_05788214.1| D-alanine--D-alanine ligase B [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260418071|gb|EEX11330.1| D-alanine--D-alanine ligase B [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 296

 Score =  283 bits (723), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 149/302 (49%), Positives = 198/302 (65%), Gaps = 8/302 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           MAVLMGG S+EREVSLSSG+ CA+AL   G +V ++D    +   L  +KPD+ FN LHG
Sbjct: 1   MAVLMGGPSAEREVSLSSGRECAAALVGEGIEVVELDAGPDLCARLQDIKPDVVFNALHG 60

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG VQ +LE L +PYTHSG+LASAL+MDK RSK+V  + G+PV  S++V +  + +
Sbjct: 61  RWGEDGCVQGLLEWLRMPYTHSGVLASALAMDKQRSKEVFRAAGLPVADSVIVPKSDVMA 120

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            H++  PYV+KP   GSS+GI ++ +  + P  L    S +  +Q+++EQYV G ELT  
Sbjct: 121 GHVMPAPYVVKPNNEGSSVGIYLVFEGSNGPPQL----SDDMPEQVMVEQYVAGRELTVT 176

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           VMGD +L VTEI      +Y Y+ KY    S HVLPA IP  I+      A  AHQ +GC
Sbjct: 177 VMGDRALTVTEILT--DGWYDYDAKYKPGGSRHVLPADIPPRIFDLCMDYALRAHQVLGC 234

Query: 241 RGISRSDFLFDPL--SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           RG+SR+D+ +D       +F LE N QPGMTP S+ PE AA+ G +F +L  WMVEDASC
Sbjct: 235 RGVSRTDYRWDEARGEEGLFLLETNTQPGMTPTSLVPEQAAHLGMTFGQLCAWMVEDASC 294

Query: 299 LR 300
            R
Sbjct: 295 DR 296


>gi|126741305|ref|ZP_01756983.1| D-alanine--D-alanine ligase [Roseobacter sp. SK209-2-6]
 gi|126717623|gb|EBA14347.1| D-alanine--D-alanine ligase [Roseobacter sp. SK209-2-6]
          Length = 296

 Score =  282 bits (722), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 145/302 (48%), Positives = 194/302 (64%), Gaps = 8/302 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           MAVLMGG S+EREVSLSSG+ CA+AL   G++V ++D    +   L  + PD+ FN LHG
Sbjct: 1   MAVLMGGPSAEREVSLSSGRECAAALRGEGYEVVELDAGPDLAERLKEISPDVVFNALHG 60

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG VQ +LE + +PYTHSG+LASAL+MDK RSK      G+PV  SIL ++ T+ +
Sbjct: 61  RWGEDGCVQGLLEWMGLPYTHSGVLASALAMDKERSKAAYRVAGLPVTESILADKATVMA 120

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            H+I+PPYV+KP   GSS+GI ++ +  + P  L  S      + +++E Y  G ELT  
Sbjct: 121 AHVIAPPYVVKPNNEGSSVGIYIVNEGANTPPQLSDSMP----ETVMVEAYAPGRELTTT 176

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           VMGD +L VT+I      +Y YE KY+   S H  PAK+P +I +     A  AH+ +GC
Sbjct: 177 VMGDRALGVTDIIT--DGWYDYEAKYAEGGSRHEFPAKVPEEIEELCLAYALKAHEILGC 234

Query: 241 RGISRSDFLFDPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           RG+SR+DF +D    K  +  LE N QPGMTP S+ PE A   G SF +L  WMVEDASC
Sbjct: 235 RGVSRTDFRWDESKGKDGLILLETNTQPGMTPTSLAPEQAEGIGMSFGQLCAWMVEDASC 294

Query: 299 LR 300
           +R
Sbjct: 295 VR 296


>gi|254476016|ref|ZP_05089402.1| D-alanine--D-alanine ligase [Ruegeria sp. R11]
 gi|214030259|gb|EEB71094.1| D-alanine--D-alanine ligase [Ruegeria sp. R11]
          Length = 296

 Score =  282 bits (721), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 144/302 (47%), Positives = 199/302 (65%), Gaps = 8/302 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           MAVLMGG S+EREVSLS+G+ CA+AL D G++V+++D    +   LA  +PD+ FN LHG
Sbjct: 1   MAVLMGGPSAEREVSLSTGRECAAALRDEGYQVTELDAGPDLAAQLAADRPDVVFNALHG 60

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG VQ +LE L IPYTHSG+LASAL+MDK RSK+   + G+PV  S L  +  + +
Sbjct: 61  RWGEDGCVQGLLEWLAIPYTHSGVLASALAMDKQRSKEAFRAAGLPVVDSGLFAKSDVSA 120

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            H+++PPYV+KP   GSS+GI ++++  + P  L    S +  D++++E Y  G ELT  
Sbjct: 121 AHVMAPPYVVKPNNEGSSVGIYIVQEAANTPPQL----SEDMPDEVMVETYAPGRELTTT 176

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V+   +L VT+I      +Y ++ KY    S HVLPA +P +I++     A  AH A+GC
Sbjct: 177 VVDGKALTVTDILT--DGWYDFDAKYKPGGSRHVLPADLPDEIFQLCLDYAVRAHDALGC 234

Query: 241 RGISRSDFLFDPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           RG+SR+DF +D    K  +  LE N QPGMTP S+ PE AA+ G SF +L  WMVEDASC
Sbjct: 235 RGVSRTDFRWDESRGKDGLILLETNTQPGMTPTSLAPEQAAHCGMSFGQLCAWMVEDASC 294

Query: 299 LR 300
            R
Sbjct: 295 GR 296


>gi|167647622|ref|YP_001685285.1| D-alanine--D-alanine ligase [Caulobacter sp. K31]
 gi|190359125|sp|B0T824|DDL_CAUSK RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|167350052|gb|ABZ72787.1| D-alanine--D-alanine ligase [Caulobacter sp. K31]
          Length = 322

 Score =  281 bits (718), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 143/304 (47%), Positives = 200/304 (65%), Gaps = 5/304 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL +G A A+ALE  G +VS++D  + V  VL  L PDL FN LHG
Sbjct: 14  IAVLLGGPSAEREVSLVTGAAYAAALERLGARVSRVDPGKDVAQVLTALAPDLVFNGLHG 73

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG VQ +LE L + YTHSG+LASAL+MDK +SK V+++ G+PV    L +R  +  
Sbjct: 74  RWGEDGCVQGVLETLGLAYTHSGVLASALAMDKAKSKAVLAAAGIPVPGGGLFDRHDVAQ 133

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            H++ PPYV+KP   GSS+G+ ++ +  + P   L +  W  G+Q+++E Y+ G+EL   
Sbjct: 134 GHVMPPPYVVKPNAEGSSVGVSLVFEGANGPPRQLAAPDWAFGEQVMVEPYIPGLELAVA 193

Query: 181 VMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           V+G++    +L VTEI    + FY Y+ KYS   S HVLPA IP  +      LA L H 
Sbjct: 194 VVGESNGPRALAVTEIRS-STGFYDYDAKYSQGGSIHVLPAPIPDAVRDRALHLAKLGHT 252

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           A+GC+G++RSDF +D ++  +  LE+N QPGMTP S+ PE A +AG SF  L+ W+VEDA
Sbjct: 253 ALGCQGVTRSDFRYDDINDLLVLLEVNTQPGMTPTSLVPEQADHAGVSFDRLVFWIVEDA 312

Query: 297 SCLR 300
              R
Sbjct: 313 YARR 316


>gi|260576896|ref|ZP_05844879.1| D-alanine/D-alanine ligase [Rhodobacter sp. SW2]
 gi|259020933|gb|EEW24246.1| D-alanine/D-alanine ligase [Rhodobacter sp. SW2]
          Length = 307

 Score =  280 bits (716), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 143/303 (47%), Positives = 199/303 (65%), Gaps = 10/303 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG+S+EREVSL SG+ CA AL +AGF+V ++D DR +   L+ ++PD+ FN LHG
Sbjct: 12  VAVLMGGLSAEREVSLVSGRECAQALREAGFQVIEVDADRDLCARLSEIQPDVVFNALHG 71

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG VQ +LE L +PYTHSG+LASAL+MDK R+K+   + G+P+  S L     + +
Sbjct: 72  RWGEDGCVQGMLEWLGLPYTHSGVLASALAMDKARAKEAYRAAGLPIVESRLACTAEVKA 131

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +H++ PPYV+KP   GSS+G+ +++   + P  L      +  + +++E Y  G ELT  
Sbjct: 132 RHVMPPPYVVKPNNEGSSVGVYLVQDAANSPPQL----GADMPEVVMVETYAPGRELTVS 187

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           VMG+ +L VT+I    + +Y Y+ KY    S HV+PA +P +I       A  AH+A+GC
Sbjct: 188 VMGERALAVTDIIT--TGWYDYDAKYKPGGSRHVVPADLPQEITAACLEYALRAHRALGC 245

Query: 241 RGISRSDFLFDPLSR---KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           RG+SR+DF +D  SR    +  LE N QPGMTP S+ PE AA  G SF EL  WMVEDAS
Sbjct: 246 RGLSRTDFRWDE-SRGLAGLILLETNTQPGMTPTSLSPEQAAQCGISFPELCRWMVEDAS 304

Query: 298 CLR 300
           C R
Sbjct: 305 CNR 307


>gi|99080527|ref|YP_612681.1| D-alanine--D-alanine ligase [Ruegeria sp. TM1040]
 gi|122984380|sp|Q1GIU7|DDL_SILST RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|99036807|gb|ABF63419.1| D-alanine--D-alanine ligase [Ruegeria sp. TM1040]
          Length = 306

 Score =  280 bits (715), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 143/302 (47%), Positives = 197/302 (65%), Gaps = 8/302 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +A+LMGG S+EREVSLS+G+ CA AL   G++V ++D    +   L  +KPD+AFN LHG
Sbjct: 11  VAMLMGGPSAEREVSLSTGRECARALRGQGYEVVEVDAGPDLVAQLNDIKPDVAFNALHG 70

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG VQ +LE L IPYTHSG+LASAL+MDK RSK    + G+PV  S++  +  + +
Sbjct: 71  RWGEDGCVQGLLEWLRIPYTHSGVLASALAMDKERSKAAYRTAGLPVVDSVIAAKADVMA 130

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +H+I+PPYV+KP   GSS+GI ++ +  + P  L +        Q+++E Y  G E+T  
Sbjct: 131 RHVIAPPYVVKPNNEGSSVGIYIVHEATNSPPQLSEEMP----AQVMVEAYAPGREMTVT 186

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           VMGD +L VT+I      +Y YE KY++  S HVLPA+IP +I       A  AHQ +GC
Sbjct: 187 VMGDRALCVTDILT--DGWYDYEAKYATGGSRHVLPAEIPDEIADLCHDYALRAHQVLGC 244

Query: 241 RGISRSDFLFDPL--SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           RGISR+DF +D    +  +  LE N QPGMTP S+ PE A + G +F +L  W+VEDASC
Sbjct: 245 RGISRTDFRWDEARGADGLVLLETNTQPGMTPTSLSPEQAEHVGLTFGQLCAWLVEDASC 304

Query: 299 LR 300
            R
Sbjct: 305 ER 306


>gi|294676380|ref|YP_003576995.1| D-alanine--D-alanine ligase [Rhodobacter capsulatus SB 1003]
 gi|294475200|gb|ADE84588.1| D-alanine--D-alanine ligase [Rhodobacter capsulatus SB 1003]
          Length = 307

 Score =  280 bits (715), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 145/302 (48%), Positives = 195/302 (64%), Gaps = 8/302 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG S+EREVSLSSG+ CA AL  AG+ V++ID    +   L  L PD+ FN LHG
Sbjct: 12  VAVLMGGPSAEREVSLSSGRECAKALRAAGYDVAEIDAGADLAERLRALMPDVVFNALHG 71

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG VQ ILE L +PYTHSG+LASAL+MDK R+K    + G+PV  S L ++  + +
Sbjct: 72  RWGEDGCVQGILEWLRLPYTHSGVLASALAMDKTRAKAAYKAAGLPVVESRLASKAEVMA 131

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            H++  PYV+KP   GSS+G+ ++    + P  L    S    + +++E Y  G ELTC 
Sbjct: 132 AHVLPAPYVVKPNNEGSSVGVYLVLDGANRPPQL----SDEMPEVVMVETYAPGRELTCT 187

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           VMGD +L VTEI    + +Y Y  KY++  S HV PA++P  I + ++  A  AH+A+GC
Sbjct: 188 VMGDRALCVTEIVT--TGWYDYAAKYTAGGSRHVCPAELPAGIAETIRDYALRAHRALGC 245

Query: 241 RGISRSDFLFDPL--SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           RG+SR+DF +D    +  +  LE N QPGMTP S+ PE AA  G SF +L  WMVEDASC
Sbjct: 246 RGVSRTDFRWDESRGTAGLILLETNTQPGMTPTSLAPEQAAAEGMSFADLCRWMVEDASC 305

Query: 299 LR 300
            R
Sbjct: 306 DR 307


>gi|288958926|ref|YP_003449267.1| D-alanine-D-alanine ligase [Azospirillum sp. B510]
 gi|288911234|dbj|BAI72723.1| D-alanine-D-alanine ligase [Azospirillum sp. B510]
          Length = 335

 Score =  280 bits (715), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 136/305 (44%), Positives = 211/305 (69%), Gaps = 8/305 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL---KPDLAFNV 57
           +AVLMGG S+EREVSL SG   A ALE+ G++V+ IDV R +G ++  L   +PD+ FN 
Sbjct: 29  VAVLMGGWSAEREVSLVSGAGVAKALEEEGYRVTAIDVQRDLGGLMQALTNPRPDVVFNA 88

Query: 58  LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117
           LHG  GEDG +Q +LE L +PYTHSG+ A+A++MDK  +K+++ + G+     ++++R  
Sbjct: 89  LHGRGGEDGTIQGVLEFLGLPYTHSGVQAAAIAMDKAMTKRLLDTVGIRSPKGMVLSRGE 148

Query: 118 MDSQ-HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
           +    H +  PY++KP+  GS++G+ ++++ Q+ P+    S     G+++L+E+++ G E
Sbjct: 149 IAGGVHPMPAPYIVKPVDEGSTVGVTLVREGQNSPVGDDGSFGATFGERVLVEEFIPGRE 208

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           LT GVMGD +L VTEI V ++  Y Y  KYS+ ++ H LPA IP  + +E +R+A LAHQ
Sbjct: 209 LTVGVMGDRALTVTEI-VFQAQVYDYTAKYSAGHAVHTLPAAIPEAVAEEAKRVAVLAHQ 267

Query: 237 AIGCRGISRSDFLFD---PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            +GCRG+SRSDF +D   P +  +++LEIN QPGMTP+S+ PE AA+ G ++  L+ W+V
Sbjct: 268 TLGCRGVSRSDFRWDDSRPGTDGLYFLEINNQPGMTPLSLVPEQAAHVGITYGALVGWLV 327

Query: 294 EDASC 298
           E+A+C
Sbjct: 328 ENAAC 332


>gi|295688573|ref|YP_003592266.1| D-alanine/D-alanine ligase [Caulobacter segnis ATCC 21756]
 gi|295430476|gb|ADG09648.1| D-alanine/D-alanine ligase [Caulobacter segnis ATCC 21756]
          Length = 319

 Score =  279 bits (714), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 147/304 (48%), Positives = 203/304 (66%), Gaps = 5/304 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG SSER+VSL SG  CA ALE  G KV++ID    +  VL   KPDL FN LHG
Sbjct: 11  IAVLLGGPSSERKVSLVSGAECADALERLGAKVTRIDAGPDIAQVLTAAKPDLVFNALHG 70

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG VQ +LE L++PYTHSG+LASAL+MDK ++K V+++ GV V    L NR  +  
Sbjct: 71  EWGEDGCVQGVLETLKLPYTHSGVLASALAMDKAKAKAVLAAAGVVVPGGGLFNRHDVAR 130

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            H++ PPYV+KP   GSS+G+ ++K+  + P + + + SW  G+++++E Y+ G+EL   
Sbjct: 131 DHVLPPPYVVKPNAEGSSVGVFIVKEGANRPPEEVGAPSWTFGEEVMVEPYIRGLELAVA 190

Query: 181 VMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           VMG+A    +L VT+I    + FY YE KYS   S HVLPA IP  +     R+A LAH 
Sbjct: 191 VMGEANGPRALAVTDIRA-STGFYDYEAKYSEGGSIHVLPAPIPDGVRDRAMRMAELAHT 249

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           A+GCR ++RSD  +D ++  +  LE+N QPGMTP S+ PE AA+ G  F +L+LW+VEDA
Sbjct: 250 ALGCRSVTRSDLRYDDINDILVLLEVNTQPGMTPTSLAPEQAAHVGIPFDQLVLWIVEDA 309

Query: 297 SCLR 300
              R
Sbjct: 310 YARR 313


>gi|149202200|ref|ZP_01879173.1| D-alanine--D-alanine ligase [Roseovarius sp. TM1035]
 gi|149144298|gb|EDM32329.1| D-alanine--D-alanine ligase [Roseovarius sp. TM1035]
          Length = 296

 Score =  279 bits (714), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 142/302 (47%), Positives = 195/302 (64%), Gaps = 8/302 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           MAV+MGG S+ER+VSLSSG+ CA AL +AGF+V ++D    +   L  +KPD+ FN LHG
Sbjct: 1   MAVIMGGPSAERDVSLSSGRECAVALREAGFEVVEVDAAADLCTCLQAIKPDVVFNALHG 60

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG VQ +LE L +PYTHSG+L+SAL+MDK R+K    + G+PV  S+L  R  + +
Sbjct: 61  RWGEDGCVQGMLEWLRLPYTHSGVLSSALAMDKERTKAAYRAAGLPVVESVLARRDEVRT 120

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +H++ PPYV+KP   GSS+GI +++   + P  L    S +  + +++E Y  G ELT  
Sbjct: 121 RHVMPPPYVVKPCNEGSSVGIYLVEAGANNPPAL----SDDMPEVVMVEAYAPGRELTTT 176

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           VMGD +L VT+I      +Y Y+ KY    S HV+PA+IP +I+      A  AH  +GC
Sbjct: 177 VMGDRALTVTDILT--DGWYDYDAKYKPGGSRHVVPAEIPQEIFDACLDYALRAHAVLGC 234

Query: 241 RGISRSDFLFDPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           RG+SR+DF +D    +  +  LE N QPGMTP S+ PE A   G +F EL  WMVEDASC
Sbjct: 235 RGVSRTDFRWDAARGRDGLILLETNTQPGMTPTSLAPEQAQAVGITFPELCRWMVEDASC 294

Query: 299 LR 300
            R
Sbjct: 295 NR 296


>gi|126726626|ref|ZP_01742466.1| D-alanine--D-alanine ligase [Rhodobacterales bacterium HTCC2150]
 gi|126703955|gb|EBA03048.1| D-alanine--D-alanine ligase [Rhodobacterales bacterium HTCC2150]
          Length = 304

 Score =  279 bits (714), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 141/302 (46%), Positives = 195/302 (64%), Gaps = 8/302 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VLMGG S+EREVSLSSGK CA+AL  AGF   ++D   ++   L  + PD+AFN LHG
Sbjct: 9   IVVLMGGPSAEREVSLSSGKECAAALVRAGFDTVELDAGPNLVEDLKRIAPDVAFNALHG 68

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG VQ ILE L+IPYTHSG+LASAL+MDK ++K    S G+PV  S+L  +  ++ 
Sbjct: 69  RWGEDGCVQGILEWLQIPYTHSGVLASALAMDKEKTKAAFRSVGLPVMESVLAPKAEIEG 128

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            H+++PPYV+KP+  GSS+G+ ++++  + P  L         + L++E Y  G ELT  
Sbjct: 129 SHVMAPPYVVKPVNEGSSVGVYLVQEGANSPPRLAPEMP----EILMVETYAPGRELTTT 184

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V+GD +L VT+I      +Y Y+ KY +  S HVLPA +P +I+      A  AH  +GC
Sbjct: 185 VIGDRALTVTDILT--DGWYDYDAKYVAGGSRHVLPADVPSEIFDTCMEYAIRAHNVLGC 242

Query: 241 RGISRSDFLFDPLS--RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           RG+SR+DF +D       +  LE N QPGMTP S+ PE A + G SF EL+ WM+EDA+C
Sbjct: 243 RGVSRTDFRWDETRGLDGLILLETNTQPGMTPTSLSPEQAQHVGISFEELVTWMIEDATC 302

Query: 299 LR 300
            R
Sbjct: 303 NR 304


>gi|163794530|ref|ZP_02188501.1| D-alanylalanine synthetase [alpha proteobacterium BAL199]
 gi|159180254|gb|EDP64777.1| D-alanylalanine synthetase [alpha proteobacterium BAL199]
          Length = 306

 Score =  277 bits (709), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 144/302 (47%), Positives = 197/302 (65%), Gaps = 9/302 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG S+ER VSLSSG+ CA AL  AG+KVS+IDVDR +   L  +KPD+ FN LHG
Sbjct: 8   VAVLMGGWSAERAVSLSSGRECAKALRQAGWKVSEIDVDRGIARKLESVKPDVVFNALHG 67

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +L +L IPYTHSG+ ASA++MDK  +K V +  G+      +V     D 
Sbjct: 68  PVGEDGNIQGVLNILGIPYTHSGVRASAVAMDKPTAKDVFARHGLRCPEGRVVTLSDFDK 127

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKK-DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
              ++PPYVIKP+  GSS+G+ ++++ D   P     +  W  GD +L+E+YV G ELT 
Sbjct: 128 GEPMTPPYVIKPIDQGSSVGVHIVREGDNYRPT----AEDWPFGDAVLVERYVPGRELTV 183

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
            V    +++VTEI      FY Y+ KY+   S H+LPA +P +I ++   +A  AH+AIG
Sbjct: 184 AVWDGEAMEVTEI-TSSHGFYDYDAKYAEGGSIHMLPAPVPDEIRRQAMDIAARAHRAIG 242

Query: 240 CRGISRSDFLFDPLSRK---VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           CRG+SR+DF +D  + +   ++ LEIN QPGMTP S+ PE AA+ G SF EL+  MVEDA
Sbjct: 243 CRGVSRADFRYDDTAGEPGDLYLLEINTQPGMTPTSLVPEQAAHLGISFPELVSRMVEDA 302

Query: 297 SC 298
            C
Sbjct: 303 RC 304


>gi|260427103|ref|ZP_05781082.1| D-alanine--D-alanine ligase [Citreicella sp. SE45]
 gi|260421595|gb|EEX14846.1| D-alanine--D-alanine ligase [Citreicella sp. SE45]
          Length = 306

 Score =  277 bits (709), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 143/303 (47%), Positives = 195/303 (64%), Gaps = 10/303 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSLSSG+ CA+AL   GF+V+++D    +   L  L PD+ FN LHG
Sbjct: 11  VAVLLGGPSAEREVSLSSGRECAAALRAEGFQVTEVDAGPDLAQQLQALAPDVVFNALHG 70

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG VQ +LE + IPYTHSG+LASAL+MDK RSKQV    G+PV  S+L ++  +++
Sbjct: 71  RWGEDGCVQGLLEWIGIPYTHSGVLASALAMDKERSKQVYRDAGLPVVESVLASKDEIEA 130

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            H+++PPYV+KP   GSS+G+ ++    + P  L    S    + L++E Y  G ELT  
Sbjct: 131 AHVMAPPYVVKPYNEGSSVGVYLVMDGANTPPRL----SPEMPETLMVETYAPGRELTTT 186

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V+GD +L VT+I      +Y Y+ KY    S HVLPA +P +++      A  AH+A+GC
Sbjct: 187 VVGDRALTVTDILT--DGWYDYDAKYKDGGSRHVLPAAVPQEVFDACLDYALRAHRALGC 244

Query: 241 RGISRSDFLFDPLSR---KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           RG+SR+DF +D  SR    +  LE N QPGMTP S+ PE     G SF  L  WMVEDA+
Sbjct: 245 RGVSRTDFRWDE-SRGLDGLILLETNTQPGMTPTSLAPEQGQSVGISFGALCRWMVEDAT 303

Query: 298 CLR 300
           C R
Sbjct: 304 CNR 306


>gi|83942737|ref|ZP_00955198.1| D-alanine--D-alanine ligase [Sulfitobacter sp. EE-36]
 gi|83953976|ref|ZP_00962697.1| D-alanine--D-alanine ligase [Sulfitobacter sp. NAS-14.1]
 gi|83841921|gb|EAP81090.1| D-alanine--D-alanine ligase [Sulfitobacter sp. NAS-14.1]
 gi|83846830|gb|EAP84706.1| D-alanine--D-alanine ligase [Sulfitobacter sp. EE-36]
          Length = 292

 Score =  276 bits (707), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 139/298 (46%), Positives = 198/298 (66%), Gaps = 8/298 (2%)

Query: 5   MGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGE 64
           MGG S+EREVSLS+G+ACA+AL D  F+V ++D    +   L   +PD+  N LHG +GE
Sbjct: 1   MGGPSAEREVSLSTGRACAAALRDRSFEVIEVDCGPDLCADLGAAQPDVVLNCLHGRWGE 60

Query: 65  DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI 124
           DG VQ +LE + +PYTHSG+LASAL+MDK RSK+V  + G+PV  S++V+  T+   H++
Sbjct: 61  DGCVQGLLEWMGLPYTHSGVLASALAMDKQRSKEVFRAAGLPVVESLIVSAATVRGSHVM 120

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
            PPYV+KP   GSS+G+ +++ + + P  L  +       ++++E+++ G ELT  VMG+
Sbjct: 121 DPPYVVKPNNEGSSVGVYLVEIENNGPPQLDDAMP----AEVMVEKFIPGRELTTTVMGE 176

Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244
            +L VT+I    + +Y Y+ KY +  STHV+PA IP +I++     A  AH A+GCRG+S
Sbjct: 177 RALTVTDIHT--TGWYDYDAKYKAGGSTHVVPADIPHEIFELCMDYALRAHNALGCRGVS 234

Query: 245 RSDFLFDPL--SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           R+DF +D    +  +F LE N QPGMTP S+ PE A   G SF EL  WMVEDASC R
Sbjct: 235 RTDFRWDESKGAAGLFLLETNTQPGMTPTSLSPEQAQAVGISFGELCAWMVEDASCNR 292


>gi|85703762|ref|ZP_01034866.1| D-alanine--D-alanine ligase [Roseovarius sp. 217]
 gi|85672690|gb|EAQ27547.1| D-alanine--D-alanine ligase [Roseovarius sp. 217]
          Length = 296

 Score =  274 bits (701), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 141/302 (46%), Positives = 193/302 (63%), Gaps = 8/302 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           MAV+MGG S+ER+VSLSSG+ CA AL +AGF+V ++D    +   L  +KPD+ FN LHG
Sbjct: 1   MAVIMGGPSAERDVSLSSGRECAVALREAGFEVVEVDAATDLCTRLQDIKPDVVFNALHG 60

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG VQ +LE L +PYTHSG+L+SAL+MDK R+K    + G+PV  S+L  R  + +
Sbjct: 61  RWGEDGCVQGMLEWLGLPYTHSGVLSSALAMDKERTKVAYRAAGLPVVDSVLARRDEVRA 120

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            H++ PPYV+KP   GSS+G+ +++   + P  L    S +  D +++E Y  G ELT  
Sbjct: 121 GHVMPPPYVVKPYNEGSSVGVYLVEAGANRPPAL----SDDMPDVVMVESYAPGRELTTT 176

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V+GD +L VT+I      +Y Y+ KY    S HV+PA +P +I+      A  AH+ +GC
Sbjct: 177 VIGDRALTVTDILT--EGWYDYDAKYKPGGSRHVVPADVPQEIFDACLDYALRAHEVLGC 234

Query: 241 RGISRSDFLFDPLS--RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           RG+SR+DF +D       +  LE N QPGMTP S+ PE A   G SF EL  WMVEDASC
Sbjct: 235 RGVSRTDFRWDEARGLDGLILLETNTQPGMTPTSLVPEQAQALGISFPELCRWMVEDASC 294

Query: 299 LR 300
            R
Sbjct: 295 NR 296


>gi|126735387|ref|ZP_01751133.1| D-alanine--D-alanine ligase [Roseobacter sp. CCS2]
 gi|126715942|gb|EBA12807.1| D-alanine--D-alanine ligase [Roseobacter sp. CCS2]
          Length = 292

 Score =  274 bits (700), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 138/298 (46%), Positives = 188/298 (63%), Gaps = 8/298 (2%)

Query: 5   MGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGE 64
           MGG S+ER+VSLS+G+ CA+AL DA   V ++D    V   L  + PD+ FN LHG +GE
Sbjct: 1   MGGPSAERDVSLSTGRECAAALRDAECNVIEVDAGPDVAARLIEIAPDVVFNALHGRWGE 60

Query: 65  DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI 124
           DG +Q +LE L+IPYTHSG+LASAL++DK R+K V    G+PV  SIL +   + + H++
Sbjct: 61  DGAIQGVLEWLQIPYTHSGVLASALTLDKQRTKDVYRKVGLPVVDSILASADAVRAAHVM 120

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
            PPYV+KP   GSS+GI ++ +  + P  L      +  D++++E +  G ELT  VMGD
Sbjct: 121 PPPYVVKPYNEGSSVGIYIVNEGANGPPQLAD----DMPDEVMVEAFAPGRELTTTVMGD 176

Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244
            +L VT+I      +Y Y  KY+   S H LPA IP+DI+      A  AH A+GCRG+S
Sbjct: 177 RALTVTDIIT--DGWYDYHAKYAPGGSRHELPADIPVDIFDACMDYALRAHDALGCRGVS 234

Query: 245 RSDFLFDPLS--RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           R+DF +D       +  LE N QPGMTP S+ PE AA+ G +F E   W+VEDASC R
Sbjct: 235 RTDFRWDEARGLDGLILLETNTQPGMTPTSLTPEQAAHVGIAFPEFCRWLVEDASCDR 292


>gi|56696094|ref|YP_166448.1| D-alanine--D-alanine ligase [Ruegeria pomeroyi DSS-3]
 gi|81350282|sp|Q5LU57|DDL_SILPO RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|56677831|gb|AAV94497.1| D-alanine--D-alanine ligase [Ruegeria pomeroyi DSS-3]
          Length = 306

 Score =  273 bits (699), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 143/302 (47%), Positives = 196/302 (64%), Gaps = 8/302 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG S+EREVSL SG+ CA+AL   GF+V ++D    +   L    PD+ FN LHG
Sbjct: 11  VAVLMGGPSAEREVSLVSGRECAAALRGEGFEVVELDAGSDLCDRLRASAPDVVFNALHG 70

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG VQ +LE L IPYT SG+LASAL+MDK RSK+   + G+PV  S L +R  +++
Sbjct: 71  RWGEDGCVQGLLEWLRIPYTSSGVLASALAMDKERSKEAYRAAGLPVAASQLADRAAIEA 130

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            H++ PPYV+KP   GSS+G+ ++ +  + P  L      +    L++E+YV G EL+  
Sbjct: 131 AHVMQPPYVVKPYNEGSSVGVYIVTEAANGPPVLAP----DLPATLMVEEYVPGRELSTT 186

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V+GD +L+VT+I      +Y Y  KYS   S HV+PA +P +I++     A  AH+A+GC
Sbjct: 187 VLGDRALNVTDIIT--DGWYDYHAKYSPGGSRHVIPADLPPEIFELCLDYALRAHKALGC 244

Query: 241 RGISRSDFLFDPL--SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           RG+SR+DF +D    +  +F LE N QPGMTP S+ PE A  AG SF +L  WMVEDASC
Sbjct: 245 RGLSRTDFRWDESRGAAGLFLLETNTQPGMTPTSLAPEQALAAGMSFGQLCAWMVEDASC 304

Query: 299 LR 300
            R
Sbjct: 305 DR 306


>gi|84516385|ref|ZP_01003744.1| D-alanine--D-alanine ligase [Loktanella vestfoldensis SKA53]
 gi|84509421|gb|EAQ05879.1| D-alanine--D-alanine ligase [Loktanella vestfoldensis SKA53]
          Length = 330

 Score =  273 bits (699), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 144/301 (47%), Positives = 192/301 (63%), Gaps = 10/301 (3%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62
           VLMGG S+EREVSLS+G+ CA+AL  A   V ++D    +   L  + PD  FN LHG +
Sbjct: 37  VLMGGPSAEREVSLSTGRECAAALRAAECDVIEVDAGPDLATRLTQIAPDAVFNALHGRW 96

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
           GEDG VQ +LE L IPYTHSGILASAL++DK R+K +  + G+PV  SIL +   + ++H
Sbjct: 97  GEDGAVQGLLEWLRIPYTHSGILASALTLDKERTKDIYRAVGLPVVDSILADADDVRARH 156

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
           ++ PPYV+KP   GSS+GI +++   + P  L    S +   ++++E Y  G ELT  VM
Sbjct: 157 VMPPPYVVKPYNEGSSVGIYIVQDAANGPPQL----SADMPARVMVETYAPGRELTTTVM 212

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
           GD +L VT+I      +Y Y  KY+   S HV+PA+IP  I+      A  AH+A+GCRG
Sbjct: 213 GDRALTVTDIIT--DGWYDYHAKYAPGGSRHVVPAEIPAQIFDACMDYALRAHRALGCRG 270

Query: 243 ISRSDFLFDPLSR---KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
           ISR+DF +D  SR    +  LE N QPGMTP S+ PE AA  G SF +L  W+VEDASC 
Sbjct: 271 ISRTDFRWDE-SRGLDGLILLETNTQPGMTPTSLAPEQAAKVGISFPQLCRWLVEDASCD 329

Query: 300 R 300
           R
Sbjct: 330 R 330


>gi|159044960|ref|YP_001533754.1| D-alanine--D-alanine ligase [Dinoroseobacter shibae DFL 12]
 gi|189083041|sp|A8LS60|DDL_DINSH RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|157912720|gb|ABV94153.1| D-alanine--D-alanine ligase [Dinoroseobacter shibae DFL 12]
          Length = 308

 Score =  272 bits (695), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 140/302 (46%), Positives = 189/302 (62%), Gaps = 8/302 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +A++MGG SSER VSLSSG+ C +AL   GF+V  +D    +   L  L+PD+ FN LHG
Sbjct: 13  VAMMMGGTSSERAVSLSSGRECGAALRAEGFEVIDLDAGPDLAARLEDLRPDVVFNALHG 72

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG VQ +LE L IPYTHSG+LASAL+MDK R+K   ++ G+P+  S L  R  + +
Sbjct: 73  RWGEDGCVQGLLEWLRIPYTHSGVLASALAMDKERTKAAYAAAGLPIATSGLFTRAQIAA 132

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +H++ PPYVIKP   GSS+G+ ++ +      +L      +  D L++E +V G ELT  
Sbjct: 133 RHVMPPPYVIKPYNEGSSVGVYLVPEGAEAAPELAD----DLPDTLMVEAFVPGRELTVT 188

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V GD +L VT+I      +Y Y+ KY    S HVLPA++P D+Y      A  AH+ +GC
Sbjct: 189 VQGDRALCVTDIVT--EGWYDYDAKYVPGGSRHVLPAEVPGDVYDACMAHAETAHRVLGC 246

Query: 241 RGISRSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           RGISR+DF +DP      +  LE N QPGMTP S+ PE A + G  F  L  W+VEDASC
Sbjct: 247 RGISRTDFRWDPRRSLDGLALLETNTQPGMTPTSLTPEQAQHVGLGFGALCRWIVEDASC 306

Query: 299 LR 300
            R
Sbjct: 307 DR 308


>gi|149914532|ref|ZP_01903062.1| D-alanine--D-alanine ligase [Roseobacter sp. AzwK-3b]
 gi|149811325|gb|EDM71160.1| D-alanine--D-alanine ligase [Roseobacter sp. AzwK-3b]
          Length = 292

 Score =  271 bits (694), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 138/298 (46%), Positives = 193/298 (64%), Gaps = 8/298 (2%)

Query: 5   MGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGE 64
           MGG S+EREVSLS+G  CA+AL +AG++V ++D    + L L+ + PD+ FN LHG +GE
Sbjct: 1   MGGPSAEREVSLSTGHECAAALREAGYQVVEVDAGPDLYLQLSEVSPDVVFNALHGRWGE 60

Query: 65  DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI 124
           DG VQ +LE + +PYTHSG+LASAL+MDK ++K +  +  +PV  S+L  R  +   H++
Sbjct: 61  DGCVQGLLEWMGLPYTHSGVLASALAMDKQKTKDIYRAEELPVVHSLLARRDDVRRAHVM 120

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
           +PPYV+KP   GSS+G+ +++   S P DL    S +  +Q+++E +  G ELT  VMGD
Sbjct: 121 APPYVVKPNNEGSSVGVYLVQDAASAPPDL----SDDMPEQVMVEAFAPGRELTATVMGD 176

Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244
            +L VT+I      +Y Y+ KY+   S HV+PA IP DI+      A  AH+ +GCRG+S
Sbjct: 177 KALTVTDILT--DGWYDYDAKYTPGGSRHVVPADIPADIFDACMDYALRAHRVLGCRGLS 234

Query: 245 RSDFLFDPLS--RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           R+DF +D       +  LE N QPGMTP S+ PE A   G SF +L  WMVEDASC R
Sbjct: 235 RTDFRWDEARGLDGLVLLETNTQPGMTPTSLSPEQAKVMGISFPDLCRWMVEDASCNR 292


>gi|254488243|ref|ZP_05101448.1| D-alanine--D-alanine ligase [Roseobacter sp. GAI101]
 gi|214045112|gb|EEB85750.1| D-alanine--D-alanine ligase [Roseobacter sp. GAI101]
          Length = 292

 Score =  271 bits (693), Expect = 8e-71,   Method: Compositional matrix adjust.
 Identities = 144/299 (48%), Positives = 190/299 (63%), Gaps = 10/299 (3%)

Query: 5   MGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGE 64
           MGG S+EREVSLSSG+ACA+AL D  F V ++D    +   L  + PD+  N LHG +GE
Sbjct: 1   MGGPSAEREVSLSSGRACAAALRDRNFDVVEVDAGPDLCADLRAVAPDVVLNCLHGRWGE 60

Query: 65  DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI 124
           DG VQ ILE + IPY+HSG+LASAL+MDK RSK V  + G+PV  SI+     + + H++
Sbjct: 61  DGCVQGILEWMHIPYSHSGVLASALAMDKQRSKDVFRTVGLPVVESIIALASDVRAGHVM 120

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
           +PPYV+KP   GSS+G+ ++  + + P  L      N  D +++EQ+  G ELT  VMG 
Sbjct: 121 APPYVVKPNNEGSSVGVYLVDVENNGPPQLDD----NMPDYVMVEQFAAGRELTTTVMGQ 176

Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244
            +L VT+I    + +Y Y+ KY    STH++PA IP DI+      A  AH A+GCRG+S
Sbjct: 177 RALTVTDILT--TGWYDYDAKYKEGGSTHIVPADIPQDIFDLCLDYALRAHNALGCRGVS 234

Query: 245 RSDFLFDPLSRKV---FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           R+DF +D  SR V     LE N QPGMTP S+ PE A   G SF +L  WMVEDASC R
Sbjct: 235 RTDFRWDE-SRGVDGLILLETNTQPGMTPTSLSPEQAQAVGISFGDLCAWMVEDASCHR 292


>gi|304321499|ref|YP_003855142.1| D-alanylalanine synthetase [Parvularcula bermudensis HTCC2503]
 gi|303300401|gb|ADM10000.1| D-alanylalanine synthetase [Parvularcula bermudensis HTCC2503]
          Length = 311

 Score =  271 bits (692), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 144/306 (47%), Positives = 193/306 (63%), Gaps = 7/306 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLA----HLKPDLAFN 56
           + VL GG  SERE+SL SG   A AL D G+ V +IDV R +  VL      L PD  FN
Sbjct: 7   IVVLKGGWCSEREISLISGATAADALRDEGYSVEEIDVGRDLATVLPASFDRLGPDAVFN 66

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116
            LHG FGEDG VQ +LE+L IPYTHSG+L+SAL M+K R+K V++  G+ V     +   
Sbjct: 67  ALHGPFGEDGRVQGLLEILNIPYTHSGVLSSALCMNKPRAKMVLAQAGLKVPEGRTLPLN 126

Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
           ++  +H ++ PYV+KP+  GSS G+ ++  +Q +        +   G + L+E ++ G E
Sbjct: 127 SLTGRHPMAAPYVLKPIGDGSSFGVNIVMSEQEVAPKTEDLDADLFGTEALVETFIPGRE 186

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           LT  V+G  +L VTEI VPK+ FY +E KY+   STHVLPA IP ++   V+  +  A Q
Sbjct: 187 LTVSVLGAVALGVTEI-VPKNTFYDFESKYAEGGSTHVLPADIPEEVADAVKAQSLKAVQ 245

Query: 237 AIGCRGISRSDFLFDPLS--RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           A+GCRG+SR DF +D  S    +F LE+N QPGMTP S+ PE AA AG  F  L+ WM+E
Sbjct: 246 ALGCRGLSRVDFRWDDRSGVNGLFILEVNTQPGMTPTSLSPEQAAAAGIDFGALVRWMIE 305

Query: 295 DASCLR 300
           DASCLR
Sbjct: 306 DASCLR 311


>gi|84501759|ref|ZP_00999931.1| D-alanine--D-alanine ligase [Oceanicola batsensis HTCC2597]
 gi|84390380|gb|EAQ02939.1| D-alanine--D-alanine ligase [Oceanicola batsensis HTCC2597]
          Length = 297

 Score =  271 bits (692), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 142/303 (46%), Positives = 189/303 (62%), Gaps = 13/303 (4%)

Query: 5   MGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGE 64
           MGG S+EREVSLS+G+ CA+AL   G++V ++D DR +   LA L PD+ FN LHG +GE
Sbjct: 1   MGGPSAEREVSLSTGRECAAALRGEGYEVVEVDADRDLSARLADLSPDVVFNALHGRWGE 60

Query: 65  DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI 124
           DG VQ +LE + IPYTHSG+LASAL+MDK R+K V    G+P   S L  R  + S+H++
Sbjct: 61  DGCVQGVLEWMRIPYTHSGVLASALAMDKERTKGVYRQAGLPFAESCLARRSEIVSRHVM 120

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
            PPYV+KP   GSS+G+ ++ +  + P  + ++      + L++E++V G ELT  VMG 
Sbjct: 121 EPPYVVKPFNEGSSVGVYLVHEVANGPPQVDEALP----ETLMVEKFVPGRELTVSVMGT 176

Query: 185 ASLD-----VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
              D     VTEI      +Y YE KY+   S HV PAKIP DI       A  AH A+G
Sbjct: 177 GEGDPGPLCVTEILT--DGWYDYEAKYTPGGSRHVCPAKIPQDIAAACLDYARRAHVALG 234

Query: 240 CRGISRSDFLFDPL--SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           CRG+SR+DF +D    ++ +  LE N QPGMTP S+ PE A   G  F  L  W+VEDAS
Sbjct: 235 CRGVSRTDFRWDETRGAKGLILLETNTQPGMTPTSLTPEHAQAMGIGFGALCRWLVEDAS 294

Query: 298 CLR 300
           C R
Sbjct: 295 CNR 297


>gi|83312950|ref|YP_423214.1| D-alanine--D-alanine ligase [Magnetospirillum magneticum AMB-1]
 gi|123540758|sp|Q2W0H0|DDL_MAGSA RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|82947791|dbj|BAE52655.1| D-alanine-D-alanine ligase and related ATP-grasp enzyme
           [Magnetospirillum magneticum AMB-1]
          Length = 305

 Score =  271 bits (692), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 141/306 (46%), Positives = 193/306 (63%), Gaps = 14/306 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVG---LVLAHLKPDLAFNV 57
           + VLMGG S+ER+VSL SG A A ALE AGF+V+ +D DR+       +   +PD+ FN 
Sbjct: 5   VTVLMGGASAERDVSLRSGAAAAKALEQAGFEVALVDCDRNPAELVRAITETRPDVVFNA 64

Query: 58  LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117
           LHG FGEDG VQ +L LL +PYTHSG+LASA +MDK  ++ + +S G+PV    ++ R  
Sbjct: 65  LHGRFGEDGCVQGVLNLLGVPYTHSGLLASAAAMDKAFARALFASAGIPVAEGRVITRTD 124

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN-HGDQLLIEQYVDGIE 176
            +    +  P+V+KPL  GSS+G+ +++ +Q  PL       W    D++L+E ++ G E
Sbjct: 125 RNGPDPLPRPFVVKPLNEGSSVGVFIVRDNQPSPL-----PDWPFDADEVLVESFIPGRE 179

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           LT  VMGD +L V EI      FY YE KY+   S H++PA IP   Y E  RLA  AH+
Sbjct: 180 LTAAVMGDRALGVLEITS-DHGFYDYEAKYAPGGSRHLMPAPIPEADYAEACRLAVAAHK 238

Query: 237 AIGCRGISRSDFLFDPL----SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           A+GCRG+SR+D  +D        ++  LE+N QPGMT  S+ PEMAAY G +F EL+ WM
Sbjct: 239 ALGCRGVSRADLRYDDTVPGQPPRLVMLEVNTQPGMTATSLVPEMAAYQGITFPELVRWM 298

Query: 293 VEDASC 298
           VE+A C
Sbjct: 299 VEEARC 304


>gi|259419137|ref|ZP_05743054.1| D-alanine--D-alanine ligase [Silicibacter sp. TrichCH4B]
 gi|259345359|gb|EEW57213.1| D-alanine--D-alanine ligase [Silicibacter sp. TrichCH4B]
          Length = 308

 Score =  271 bits (692), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 142/302 (47%), Positives = 193/302 (63%), Gaps = 8/302 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +A+LMGG S+EREVSLS+G+ CA AL   G++V ++D    +   L  +KPD+ FN LHG
Sbjct: 13  VAMLMGGPSAEREVSLSTGRECARALRGEGYEVVEVDAGPDLVAQLKDIKPDVVFNALHG 72

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG VQ ILE L IPYTHSG+LASAL+MDK RSK      G+PV  S+L ++  + +
Sbjct: 73  RWGEDGCVQGILEWLRIPYTHSGVLASALAMDKERSKAAYRIAGLPVVDSVLASKDEVMA 132

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            H+I+PPYV+KP   GSS+GI ++ +  + P  L    S     ++++E Y  G E+T  
Sbjct: 133 GHVIAPPYVVKPNNEGSSVGIYIVHEAANSPPQL----SDEMPARVMVETYAPGREMTVT 188

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           VMGD +L VT+I      +Y YE KY++  S HVLPA +P +I       A  AH  +GC
Sbjct: 189 VMGDRALCVTDILT--DGWYDYEAKYATGGSRHVLPADVPEEITNLCLDYAARAHDVLGC 246

Query: 241 RGISRSDFLFDPL--SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           RGISR+DF +D    +  +  LE N QPGMTP S+ PE A + G +F +L  W+VEDASC
Sbjct: 247 RGISRTDFRWDEARGAEGLVLLETNTQPGMTPTSLSPEQAEHCGITFGQLCAWLVEDASC 306

Query: 299 LR 300
            R
Sbjct: 307 ER 308


>gi|110680528|ref|YP_683535.1| D-alanine--D-alanine ligase [Roseobacter denitrificans OCh 114]
 gi|109456644|gb|ABG32849.1| D-alanine--D-alanine ligase [Roseobacter denitrificans OCh 114]
          Length = 332

 Score =  270 bits (690), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 139/302 (46%), Positives = 189/302 (62%), Gaps = 8/302 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S EREVSLSSG+ACA+AL D G+ V +ID    +G  L    PD   N LHG
Sbjct: 37  VAVLLGGPSVEREVSLSSGQACAAALRDEGYDVVEIDAGHDLGARLIDAGPDAVLNCLHG 96

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG VQ +LE + +PY+HSG+LASAL+MDK RSK    + G+PV PS++     +  
Sbjct: 97  RWGEDGCVQGLLEWMGVPYSHSGVLASALAMDKQRSKDAFVAAGLPVVPSVIAKAADVRM 156

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            H++ PPYV+KP   GSS+G+ ++ +  + P  L    S +   ++++E +  G ELT  
Sbjct: 157 GHVMQPPYVVKPNNEGSSVGVYLVHEAANGPPQL----SEDMPQEVMVEAFAPGRELTTT 212

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V+GD +L VT+I      +Y Y+ KY    S HV+PA IP DI+      A  AH A+GC
Sbjct: 213 VVGDRALTVTDIVT--DGWYDYDAKYKPGGSHHVVPADIPADIFDLCMDYALRAHHALGC 270

Query: 241 RGISRSDFLFDPL--SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           RG+SR+DF +D    +  +  LE N QPGMT  S+ PE AA  G +F +L  WMVEDASC
Sbjct: 271 RGVSRTDFRWDETKGAAGLILLETNTQPGMTATSLTPEQAAVTGMTFGKLCAWMVEDASC 330

Query: 299 LR 300
            R
Sbjct: 331 DR 332


>gi|190359233|sp|Q163J4|DDL_ROSDO RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
          Length = 319

 Score =  270 bits (689), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 139/302 (46%), Positives = 189/302 (62%), Gaps = 8/302 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S EREVSLSSG+ACA+AL D G+ V +ID    +G  L    PD   N LHG
Sbjct: 24  VAVLLGGPSVEREVSLSSGQACAAALRDEGYDVVEIDAGHDLGARLIDAGPDAVLNCLHG 83

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG VQ +LE + +PY+HSG+LASAL+MDK RSK    + G+PV PS++     +  
Sbjct: 84  RWGEDGCVQGLLEWMGVPYSHSGVLASALAMDKQRSKDAFVAAGLPVVPSVIAKAADVRM 143

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            H++ PPYV+KP   GSS+G+ ++ +  + P  L    S +   ++++E +  G ELT  
Sbjct: 144 GHVMQPPYVVKPNNEGSSVGVYLVHEAANGPPQL----SEDMPQEVMVEAFAPGRELTTT 199

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V+GD +L VT+I      +Y Y+ KY    S HV+PA IP DI+      A  AH A+GC
Sbjct: 200 VVGDRALTVTDIVT--DGWYDYDAKYKPGGSHHVVPADIPADIFDLCMDYALRAHHALGC 257

Query: 241 RGISRSDFLFDPL--SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           RG+SR+DF +D    +  +  LE N QPGMT  S+ PE AA  G +F +L  WMVEDASC
Sbjct: 258 RGVSRTDFRWDETKGAAGLILLETNTQPGMTATSLTPEQAAVTGMTFGKLCAWMVEDASC 317

Query: 299 LR 300
            R
Sbjct: 318 DR 319


>gi|254460833|ref|ZP_05074249.1| D-alanine--D-alanine ligase [Rhodobacterales bacterium HTCC2083]
 gi|206677422|gb|EDZ41909.1| D-alanine--D-alanine ligase [Rhodobacteraceae bacterium HTCC2083]
          Length = 292

 Score =  269 bits (687), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 139/299 (46%), Positives = 192/299 (64%), Gaps = 10/299 (3%)

Query: 5   MGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGE 64
           MGG S+EREVS SSG+ACA+AL + G++V+++D    +   L  + PD+ FN LHG  GE
Sbjct: 1   MGGPSAEREVSFSSGRACAAALREHGYQVTEMDAGADLATRLIAIAPDVVFNALHGRLGE 60

Query: 65  DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI 124
           DG VQ +LE L+IPYTHSG+LASAL+MDK RSK+V +  G+P+  SI+V    + ++H++
Sbjct: 61  DGCVQGVLEWLQIPYTHSGVLASALAMDKQRSKEVFAQVGLPIVKSIIVPAADVRARHVM 120

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
             PYV+KP   GSS+G+ ++ +  + P  L  +      + +++E +  G ELT  VMGD
Sbjct: 121 DAPYVVKPNSEGSSVGVYLVNEAANGPPQLDGTMP----EMVMVEAFAPGRELTTTVMGD 176

Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244
             L VT+I      +Y Y+ KY    S HV+PA+IP +I+      A  AH+A+GCRG+S
Sbjct: 177 RPLTVTDILT--DGWYDYDAKYKEGGSRHVVPAQIPQEIWDACMDYAVRAHEALGCRGVS 234

Query: 245 RSDFLFDPLSR---KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           R+DF +D  SR    +  LE N QPGMT  S+ PE A   G SF EL  WMVEDASC R
Sbjct: 235 RTDFRWDE-SRGLAGLILLETNTQPGMTATSLSPEQAQAIGMSFSELCSWMVEDASCNR 292


>gi|163738723|ref|ZP_02146137.1| D-alanine--D-alanine ligase [Phaeobacter gallaeciensis BS107]
 gi|161388051|gb|EDQ12406.1| D-alanine--D-alanine ligase [Phaeobacter gallaeciensis BS107]
          Length = 292

 Score =  268 bits (686), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 134/298 (44%), Positives = 194/298 (65%), Gaps = 8/298 (2%)

Query: 5   MGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGE 64
           MGG S+EREVSLS+G+ CA+AL D G++V+++D    +   L   +PD+ FN LHG +GE
Sbjct: 1   MGGPSAEREVSLSTGRECATALRDEGYQVTELDAGPDLAARLQADRPDVVFNALHGRWGE 60

Query: 65  DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI 124
           DG VQ +LE L IPYTHSG+LASAL+MDK R+K +  + G+PV  S + ++  + + H++
Sbjct: 61  DGCVQGLLEWLGIPYTHSGVLASALAMDKQRAKSIYRAAGLPVVESGIYSKAEVMAGHVM 120

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
           +PPYV+KP   GSS+G+ ++ +  + P  L Q    +  D++++E +  G ELT  V+GD
Sbjct: 121 APPYVVKPNNEGSSVGVYLVNEVANGPPQLSQ----DMPDEVMVESFAPGRELTTTVLGD 176

Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244
             L VT+I      +Y Y+ KY    S HVLPA +P +I+      A  AH A+GCRGIS
Sbjct: 177 KPLTVTDILT--DGWYDYDAKYKPGGSRHVLPADVPEEIFALCLDYAVKAHDALGCRGIS 234

Query: 245 RSDFLFDPL--SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           R+DF +D    +  +  LE N QPGMTP S+ PE A ++G +F +L  W+VEDA+C R
Sbjct: 235 RTDFRWDEARGAEGLILLETNTQPGMTPTSLTPEQAEHSGMTFGQLCSWLVEDATCPR 292


>gi|119385134|ref|YP_916190.1| D-alanine--D-alanine ligase [Paracoccus denitrificans PD1222]
 gi|119374901|gb|ABL70494.1| D-alanine--D-alanine ligase [Paracoccus denitrificans PD1222]
          Length = 301

 Score =  267 bits (682), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 139/300 (46%), Positives = 201/300 (67%), Gaps = 3/300 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSER VSLSSG ACA  L  AG++V++++V   +   L  ++P + FN LHG
Sbjct: 5   VAVLMGGTSSERSVSLSSGHACAEGLARAGYRVARVEVRDDIAEKLLQIRPSVVFNALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG VQ +LE L IPYTHSG++ASAL+M K+ +K V ++ GVPV  SI+V+     +
Sbjct: 65  TGGEDGAVQGLLENLGIPYTHSGVMASALAMHKINAKHVAAAHGVPVAESIVVSAADASA 124

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            H++  PYV+KP+  GSS G+ +++  ++ P   L ++     D ++ E+YV G ELTC 
Sbjct: 125 SHVMQLPYVLKPVADGSSCGVHIVRSGEAPP--QLATNEAESAD-VMAERYVPGRELTCA 181

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V+G  +L + EI      +Y +  KY    S H+ PA +P DI +++ R + +AH+AIGC
Sbjct: 182 VLGGEALGIIEIVPKDGAWYDFSAKYEIGGSRHICPAVLPPDIEEKILRYSEIAHRAIGC 241

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           RG++RSDF  DP + ++ WLEIN QPGMTP S+ PE+AA+ G +F +L+ W+VEDAS  R
Sbjct: 242 RGVTRSDFRHDPDTGELIWLEINTQPGMTPTSLLPEIAAHHGLTFEKLVSWIVEDASLRR 301


>gi|163746137|ref|ZP_02153496.1| D-alanine--D-alanine ligase [Oceanibulbus indolifex HEL-45]
 gi|161380882|gb|EDQ05292.1| D-alanine--D-alanine ligase [Oceanibulbus indolifex HEL-45]
          Length = 293

 Score =  267 bits (682), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 141/299 (47%), Positives = 192/299 (64%), Gaps = 9/299 (3%)

Query: 5   MGGISSEREVSLSSGKACASAL-EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFG 63
           MGG S+EREVSLSSG+ACA+AL E  G+ V +++ DR +  VL  LKP    N LHG +G
Sbjct: 1   MGGPSAEREVSLSSGRACAAALREHGGYNVIEVEADRDLAAVLTDLKPYAVLNCLHGRWG 60

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
           EDG VQ +LE L IPYTHSG+LASAL+MDK RSK V    G+PV  SI+  +  + + H+
Sbjct: 61  EDGSVQGLLEWLHIPYTHSGVLASALAMDKQRSKDVFRHAGLPVLESIIAPKADVMASHV 120

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           ++PPYV+KP   GSS+G+ ++ ++ + P  L    S +   ++++E +  G ELT  VMG
Sbjct: 121 MAPPYVVKPNNEGSSVGVYLVAEENNGPPQL----SEDMPAEVMVETFAPGRELTTTVMG 176

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D +L VT+I    + +Y Y+ KY    S HV+PA +P +I       A  AH+A+GC+G+
Sbjct: 177 DRALGVTDIIT--TGWYDYDAKYKPGGSRHVVPADLPQEITDLCFDYARRAHEALGCKGV 234

Query: 244 SRSDFLFDPL--SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           SR+DF +D    +  +  LE N QPGMT  S+ PE A   G SF EL  WMVEDASC R
Sbjct: 235 SRTDFRWDAARGAEGLILLETNTQPGMTATSLSPEQAVACGISFPELCAWMVEDASCDR 293


>gi|89067822|ref|ZP_01155266.1| D-alanine--D-alanine ligase [Oceanicola granulosus HTCC2516]
 gi|89046420|gb|EAR52476.1| D-alanine--D-alanine ligase [Oceanicola granulosus HTCC2516]
          Length = 293

 Score =  266 bits (681), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 139/300 (46%), Positives = 189/300 (63%), Gaps = 11/300 (3%)

Query: 5   MGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGE 64
           MGG S+EREVSLS+G+ C  AL +AGF   +ID    +   LA  KPD+ FN LHG +GE
Sbjct: 1   MGGPSAEREVSLSTGRGCVDALREAGFSTIEIDAGPDLAERLAEAKPDVVFNALHGRWGE 60

Query: 65  DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI 124
           DG VQ +LE L +PYTHSG+LASAL+MDK R+K    + G+PV  S L  R  +++ H++
Sbjct: 61  DGCVQGLLEWLRLPYTHSGVLASALAMDKERAKDAFRAEGLPVMESRLATRDEVEAGHVL 120

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
            PPYV+KP   GSS+G+ ++ +  + P  L         +++++E +  G ELT  VMG+
Sbjct: 121 PPPYVVKPYNEGSSVGVYIVAEGANAPPKLGAEMP----ERVMVEAFAPGRELTTMVMGE 176

Query: 185 -ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
             +L VT+I      +Y Y+ KY    S H +PA IP +I    +  A  AH+ IGCRG+
Sbjct: 177 RGALGVTDIIT--DGWYDYDAKYKEGGSRHEVPAAIPAEIGAACRDYAERAHRVIGCRGV 234

Query: 244 SRSDFLFDPLSR---KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           +R+DF +D  SR    +  LEIN QPGMTP S+ PE AA+AG  F EL  W+VEDASC R
Sbjct: 235 TRTDFRWDE-SRGLDGLVLLEINTQPGMTPTSLVPEQAAWAGIGFPELCTWLVEDASCDR 293


>gi|119383949|ref|YP_915005.1| D-alanine--D-alanine ligase [Paracoccus denitrificans PD1222]
 gi|119373716|gb|ABL69309.1| D-alanine--D-alanine ligase [Paracoccus denitrificans PD1222]
          Length = 301

 Score =  266 bits (681), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 138/300 (46%), Positives = 201/300 (67%), Gaps = 3/300 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSER VSLSSG ACA  L  AG++V++++V   +   L  ++P + FN LHG
Sbjct: 5   VAVLMGGTSSERSVSLSSGHACAEGLAKAGYRVARVEVRDDIAEKLLQIRPSVVFNALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG VQ +LE L IPYTHSG++ASAL+M K+ +K V ++ GVPV  SI+V+     +
Sbjct: 65  TGGEDGAVQGLLENLGIPYTHSGVMASALAMHKINAKHVAAAHGVPVAESIVVSAADASA 124

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            H++  PYV+KP+  GSS G+ +++  ++ P   L ++     D ++ E+YV G ELTC 
Sbjct: 125 SHVMQLPYVLKPVADGSSCGVHIVRSGEAPP--QLAANEAESAD-VMAERYVPGRELTCA 181

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V+G  +L + EI      +Y +  KY    S H+ PA +P DI +++ R + +AH+AIGC
Sbjct: 182 VLGGKALGIIEIVPKDGAWYDFSAKYEIGGSRHICPAVLPPDIEEKILRYSEIAHRAIGC 241

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           RG++RSDF  DP + ++ WLEIN QPGMTP+S+ PE+AA+ G +F  L+ W++EDAS  R
Sbjct: 242 RGVTRSDFRHDPDTGELIWLEINTQPGMTPISLLPEIAAHHGITFENLVSWIIEDASLRR 301


>gi|255261595|ref|ZP_05340937.1| D-alanine--D-alanine ligase B [Thalassiobium sp. R2A62]
 gi|255103930|gb|EET46604.1| D-alanine--D-alanine ligase B [Thalassiobium sp. R2A62]
          Length = 306

 Score =  265 bits (678), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 138/302 (45%), Positives = 191/302 (63%), Gaps = 8/302 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+ GG S+EREVSLSSG  CA+ L + G++V ++D    + + LA  +PD+ FN LHG
Sbjct: 11  IVVIKGGPSAEREVSLSSGFECATGLRENGYEVIEVDAGHDLFVHLAEHQPDVVFNALHG 70

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG VQ ILE ++IPYTHSG+LASAL+MDK RSKQV    G+PV  S LV++     
Sbjct: 71  RWGEDGCVQGILEWMQIPYTHSGVLASALAMDKQRSKQVFVEAGLPVVESRLVSKEAAQV 130

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            H++  PYVIKP   GSS+G+ +++   + P  L         D++++E +  G ELT  
Sbjct: 131 SHVLDVPYVIKPNNEGSSVGVYLVEDGANGPPTLGDEMP----DEVMVEAFAPGRELTTT 186

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V+GD +L VT+I      +Y Y+ KY    S HVLPA IP +I+      A  AH A+GC
Sbjct: 187 VLGDRALTVTDIIT--DGWYDYDAKYVEGGSRHVLPADIPSEIHDACLDYALRAHVALGC 244

Query: 241 RGISRSDFLFDPLS--RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           RG +R+DF +D       +  LE N QPGMTP S+ PE AA+ G SF +L+ W++EDA+C
Sbjct: 245 RGATRTDFRWDEARGIDGLILLETNTQPGMTPTSLVPEQAAHVGISFPDLMRWIIEDATC 304

Query: 299 LR 300
            R
Sbjct: 305 NR 306


>gi|163741566|ref|ZP_02148957.1| D-alanine--D-alanine ligase [Phaeobacter gallaeciensis 2.10]
 gi|161385300|gb|EDQ09678.1| D-alanine--D-alanine ligase [Phaeobacter gallaeciensis 2.10]
          Length = 292

 Score =  264 bits (674), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 134/298 (44%), Positives = 194/298 (65%), Gaps = 8/298 (2%)

Query: 5   MGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGE 64
           MGG S+EREVSLS+G+ CA+AL D G++V+++D    +   L   +PD+ FN LHG +GE
Sbjct: 1   MGGPSAEREVSLSTGRECATALRDEGYQVTELDAGPDLAARLQADRPDVVFNALHGRWGE 60

Query: 65  DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI 124
           DG VQ +LE L IPYTHSG+LASAL+MDK R+K +  + G+PV  S + ++  + + H++
Sbjct: 61  DGCVQGLLEWLGIPYTHSGVLASALAMDKQRAKSIYRAAGLPVVESGIYSKTEVMAGHVM 120

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
           +PPYV+KP   GSS+G+ ++ +  + P  L  S+   H  ++++E +  G ELT  V+GD
Sbjct: 121 APPYVVKPNNEGSSVGVYLVNEVANGPPQL--SADMPH--EVMVESFAPGRELTTTVLGD 176

Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244
             L VT+I      +Y Y+ KY    S HVLPA +P +I+      A  AH A+GCRGIS
Sbjct: 177 KPLMVTDILT--DGWYDYDAKYKPGGSRHVLPADVPEEIFALCLDYAVKAHDALGCRGIS 234

Query: 245 RSDFLFDPL--SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           R+DF +D    +  +  LE N QPGMTP S+ PE A ++G +F +L  W+VEDA+C R
Sbjct: 235 RTDFRWDEARGAEGLILLETNTQPGMTPTSLTPEQAEHSGMTFGQLCSWLVEDATCPR 292


>gi|119387195|ref|YP_918250.1| D-alanine--D-alanine ligase [Paracoccus denitrificans PD1222]
 gi|119377790|gb|ABL72554.1| D-alanine--D-alanine ligase [Paracoccus denitrificans PD1222]
          Length = 311

 Score =  264 bits (674), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 137/299 (45%), Positives = 194/299 (64%), Gaps = 10/299 (3%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62
           VLMGG S+EREVSLSSG+ CA AL  AG++V ++D  R +   LA   PD+ FN LHG +
Sbjct: 18  VLMGGPSAEREVSLSSGRECAVALRQAGYEVVELDAGRDLPARLAEHAPDVVFNALHGRW 77

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
           GEDG VQ +LE L   YTHSG+LASAL+MDK R+K+++   G+PV  S++ +   + ++H
Sbjct: 78  GEDGCVQGLLEWLGWRYTHSGVLASALAMDKSRAKEILRLAGLPVLDSLIADADEVRARH 137

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
           +++PPYV+KP   GSS+G+ ++ +  + P  L          ++++E Y  G ELT  V+
Sbjct: 138 VMAPPYVVKPNDEGSSVGVYIVHEAANGPPQLSDKMP----ARVMVETYAPGRELTVAVL 193

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
           GD +L VTEI      +Y Y+ KY+   S HV+PA IP +I    +  A  AH+A+GCRG
Sbjct: 194 GDRALGVTEIVT--EGWYDYDAKYTPGGSRHVIPADIPEEIAAACRDHAVQAHRALGCRG 251

Query: 243 ISRSDFLFDPLSR---KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           ++RSDF +D  SR    +  LE+N QPGMTP S+ PE AA++G  F  L  W+VE+A C
Sbjct: 252 LTRSDFRWDE-SRGLDGLIILEVNTQPGMTPTSLAPEQAAHSGMDFPALCRWIVEEALC 309


>gi|329115580|ref|ZP_08244302.1| D-alanine--D-alanine ligase [Acetobacter pomorum DM001]
 gi|326695008|gb|EGE46727.1| D-alanine--D-alanine ligase [Acetobacter pomorum DM001]
          Length = 312

 Score =  263 bits (673), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 136/306 (44%), Positives = 188/306 (61%), Gaps = 10/306 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL---KPDLAFNV 57
           + VLMGG+SSER VSLSSG+  A AL   G+ V  +D    +  ++  L   KPD+ FN 
Sbjct: 7   VTVLMGGMSSERVVSLSSGQGVAEALRSKGYDVCTLDAQADLAALVETLNTQKPDVVFNA 66

Query: 58  LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117
           LHG FGEDG +Q IL+ + IPYTHSGI ASA +MDK  ++ +  + G+PV   ++V+  T
Sbjct: 67  LHGRFGEDGCIQGILDWMGIPYTHSGIRASATAMDKAAARAIFQTAGLPVAEGMVVDIAT 126

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
           +     +  PYV+KPL  GSS+G+ +++   +   D+++  +W  G Q L+E ++ G E+
Sbjct: 127 LADADPLPTPYVVKPLNEGSSVGVSIVRTGSNTRADIVK--NWTFGPQALVEAFIPGREI 184

Query: 178 TCGVMGDASLDVTEIAVPKS--DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
           T GVMGD +L +T+I    +  DFY Y+ KY    S HVLPA+I     K    +A  AH
Sbjct: 185 TVGVMGDRALTITDITPTGTGHDFYDYDSKYQVGGSAHVLPAQIDASSAKLALEVAVKAH 244

Query: 236 QAIGCRGISRSDFLFD---PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           QA+GC G SRSDF  D   P    +  LE+N QPGMT  S+ PE AAY G S+ EL  W+
Sbjct: 245 QALGCSGASRSDFRLDDTNPEQPHLILLEVNTQPGMTATSLLPEQAAYCGISYPELCAWL 304

Query: 293 VEDASC 298
           VE A+C
Sbjct: 305 VEQATC 310


>gi|258542973|ref|YP_003188406.1| D-alanine--D-alanine ligase [Acetobacter pasteurianus IFO 3283-01]
 gi|256634051|dbj|BAI00027.1| D-alanine--D-alanine ligase [Acetobacter pasteurianus IFO 3283-01]
 gi|256637111|dbj|BAI03080.1| D-alanine--D-alanine ligase [Acetobacter pasteurianus IFO 3283-03]
 gi|256640163|dbj|BAI06125.1| D-alanine--D-alanine ligase [Acetobacter pasteurianus IFO 3283-07]
 gi|256643220|dbj|BAI09175.1| D-alanine--D-alanine ligase [Acetobacter pasteurianus IFO 3283-22]
 gi|256646275|dbj|BAI12223.1| D-alanine--D-alanine ligase [Acetobacter pasteurianus IFO 3283-26]
 gi|256649328|dbj|BAI15269.1| D-alanine--D-alanine ligase [Acetobacter pasteurianus IFO 3283-32]
 gi|256652314|dbj|BAI18248.1| D-alanine--D-alanine ligase [Acetobacter pasteurianus IFO
           3283-01-42C]
 gi|256655372|dbj|BAI21299.1| D-alanine--D-alanine ligase [Acetobacter pasteurianus IFO 3283-12]
          Length = 312

 Score =  263 bits (672), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 136/306 (44%), Positives = 189/306 (61%), Gaps = 10/306 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL---KPDLAFNV 57
           + VLMGG+SSER VSLSSG+  A AL   G+ V  +D    +  ++  L   KPD+ FN 
Sbjct: 7   VTVLMGGMSSERVVSLSSGQGVAEALRSKGYDVCTLDAQADLATLVEALNTQKPDVVFNA 66

Query: 58  LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117
           LHG FGEDG +Q IL+ + IPYTHSGI ASA +MDK  ++ +  + G+PV   ++V+  T
Sbjct: 67  LHGRFGEDGCIQGILDWMGIPYTHSGIRASATAMDKAAARAIFQTAGLPVAEGMVVDIAT 126

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
           +     +  PYV+KPL  GSS+G+ +++   +   D+++  +W +G Q L+E ++ G E+
Sbjct: 127 LAHADPLPTPYVVKPLNEGSSVGVSIVRTGSNTRADIVK--NWTYGPQALVEAFIPGREI 184

Query: 178 TCGVMGDASLDVTEIAVPKS--DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
           T GVMGD +L +T+I    +  DFY Y+ KY    S HVLPA+I     K    +A  AH
Sbjct: 185 TVGVMGDRALTITDITPTGTGHDFYDYDSKYQVGGSAHVLPAQIDAASAKLALEVAVKAH 244

Query: 236 QAIGCRGISRSDFLFD---PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           QA+GC G SRSDF  D   P    +  LE+N QPGMT  S+ PE AAY G S+ EL  W+
Sbjct: 245 QALGCSGASRSDFRLDDTNPDQPHLILLEVNTQPGMTATSLLPEQAAYCGISYPELCAWL 304

Query: 293 VEDASC 298
           VE A+C
Sbjct: 305 VEQATC 310


>gi|86137674|ref|ZP_01056251.1| D-alanine--D-alanine ligase [Roseobacter sp. MED193]
 gi|85826009|gb|EAQ46207.1| D-alanine--D-alanine ligase [Roseobacter sp. MED193]
          Length = 296

 Score =  263 bits (672), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 138/302 (45%), Positives = 196/302 (64%), Gaps = 8/302 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           MAVL+GG S+EREVSLSSG+ CA+AL   G++V ++D    + + L  +KPD+ FN LHG
Sbjct: 1   MAVLLGGPSAEREVSLSSGRECAAALRGEGYEVVELDAGPDLYVQLTAIKPDVVFNALHG 60

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG VQ +LE + +PYTHSG+LASAL+MDK RSK V    G+P+  S L ++  + +
Sbjct: 61  RWGEDGCVQGLLEWMGLPYTHSGVLASALAMDKQRSKMVFHEAGLPIMESGLYDKDAVMA 120

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            H+++PPYV+KP   GSS+GI ++ +  + P  L    S     ++L+E +  G EL+  
Sbjct: 121 DHVMAPPYVVKPNNEGSSVGIYLVHEAANGPPQL----SPEMPQEVLVEAFAPGRELSVS 176

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V+GD +L VT+I      +Y Y+ KY    S HV+PA+IP++I       A  AH+A+GC
Sbjct: 177 VLGDRALAVTDILT--DGWYDYDAKYKPGGSRHVIPAEIPVEIRDLCLDYALRAHRALGC 234

Query: 241 RGISRSDFLFDPL--SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           RG+SR+D  +D    +  +  LE N QPGMTP S+ PE AA+ G SF  L  W+VE+ASC
Sbjct: 235 RGLSRTDIRWDESKGADGLILLETNNQPGMTPTSLAPEQAAHCGLSFGALCAWLVEEASC 294

Query: 299 LR 300
            R
Sbjct: 295 GR 296


>gi|84686344|ref|ZP_01014238.1| D-alanine--D-alanine ligase [Maritimibacter alkaliphilus HTCC2654]
 gi|84665527|gb|EAQ12003.1| D-alanine--D-alanine ligase [Rhodobacterales bacterium HTCC2654]
          Length = 283

 Score =  263 bits (671), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 135/289 (46%), Positives = 184/289 (63%), Gaps = 8/289 (2%)

Query: 14  VSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILE 73
           +SLSSG+ CA+AL   G++V ++D    +   L+ + PD+ FN LHG FGEDG VQ +LE
Sbjct: 1   MSLSSGRECAAALRGEGYEVVELDAGPDLCARLSEIAPDVVFNALHGQFGEDGRVQGLLE 60

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPL 133
            L IPYTHSG+L+SAL+MDK RSK+V S  G+P+  S L ++  ++ +H++ PPYV+KP 
Sbjct: 61  WLRIPYTHSGVLSSALAMDKERSKEVFSQAGLPIAESRLASKDEIEGRHVMEPPYVVKPY 120

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
             GSS+G+ ++ +  + P  L    + +  D L++E+YV G ELT  VMGD +L VTEI 
Sbjct: 121 NEGSSVGVYIVAEGANTPPKL----AVDMPDTLMVEKYVPGRELTVTVMGDRALAVTEIV 176

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
                +Y Y+ KY    S H +PAK+P  I       A  AH A+GCRG+SRSDF +D  
Sbjct: 177 T--DGWYDYDAKYKPGGSRHEVPAKLPDQITAACLDYAVRAHDALGCRGVSRSDFRWDED 234

Query: 254 S--RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
                +  LE N QPGMTP S+ PE AA  G +F  L+ WMVEDASC R
Sbjct: 235 KGLDGLILLEQNTQPGMTPTSLTPEQAATVGITFGALVRWMVEDASCNR 283


>gi|126729256|ref|ZP_01745070.1| D-alanine--D-alanine ligase [Sagittula stellata E-37]
 gi|126710246|gb|EBA09298.1| D-alanine--D-alanine ligase [Sagittula stellata E-37]
          Length = 296

 Score =  262 bits (669), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 133/302 (44%), Positives = 190/302 (62%), Gaps = 8/302 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           MAVL GG S+EREVSL SG+ CA+AL   G++V ++D    V   L  + PD+ FN LHG
Sbjct: 1   MAVLKGGPSAEREVSLVSGRECAAALRGEGYEVIELDAGPDVAERLKEIAPDVVFNALHG 60

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG +Q +LE L +PYTHSG+LAS+L++DK ++K    + G+PV  S L  +  + +
Sbjct: 61  RWGEDGCIQGMLEWLRLPYTHSGVLASSLAIDKEKTKAAYRTAGLPVAESSLARKSDVMA 120

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            H+++PPYV+KP   GSS+G+ ++ ++ + P  L ++      + +++EQ+V G ELT  
Sbjct: 121 AHVMAPPYVVKPYNEGSSVGVYLVHEEANGPPVLDETMP----EVVMVEQFVPGRELTAT 176

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           VMG  +L VTEI      +Y Y+ KY +  S H+ PA++P DI +     A  AH A+GC
Sbjct: 177 VMGGRALGVTEILT--DGWYDYDAKYKAGGSRHICPAELPQDITEACLDYALRAHAALGC 234

Query: 241 RGISRSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           RG+SR+DF +D       +  LE N QPGMTP S+ PE     G SF +   WMVEDASC
Sbjct: 235 RGVSRTDFRWDDTQELAGLRLLETNTQPGMTPTSLSPEHGQLVGMSFGQFCAWMVEDASC 294

Query: 299 LR 300
            R
Sbjct: 295 DR 296


>gi|326402238|ref|YP_004282319.1| D-alanine--D-alanine ligase [Acidiphilium multivorum AIU301]
 gi|325049099|dbj|BAJ79437.1| D-alanine--D-alanine ligase [Acidiphilium multivorum AIU301]
          Length = 301

 Score =  261 bits (668), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 133/300 (44%), Positives = 192/300 (64%), Gaps = 6/300 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--DLAFNVL 58
           +AVL+GGIS EREVSL+SG+  A+AL  AG+ V +I+V   +G V+A L P  D  FN L
Sbjct: 4   VAVLLGGISEEREVSLASGRQVAAALRKAGYDVFEIEVGADLGAVIAALTPAPDAVFNAL 63

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
           HG FGEDG +Q +L+ + IPYTHSG+ AS+++MDK  +K V +S G+P+    +V    +
Sbjct: 64  HGRFGEDGTIQGVLDYMGIPYTHSGVRASSMAMDKGAAKAVFASAGLPLAQHRIVPLDEL 123

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                +  PYVIKP+  GSS+G+ ++++  +   D+  + +W HG   + E+YV G ELT
Sbjct: 124 AEADPLPRPYVIKPVNEGSSVGVFILREGDNRRADI--ARAWRHGSVAMTEEYVPGRELT 181

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             V+ D +L VTEI      FY Y  KY++  S H +PA +P  +    + +A  AH+A+
Sbjct: 182 VSVLEDRALAVTEIRA--EGFYDYTAKYAAGASRHEIPADVPPSVSARARDVAVAAHRAL 239

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           GCRG +RSDF +D  + ++  LE+N QPGMTP S+ PE AA+ G  F  L  WMVE+A+C
Sbjct: 240 GCRGATRSDFRYDDETDRLVLLEVNTQPGMTPTSLLPEQAAHCGIDFPALCAWMVENAAC 299


>gi|23014453|ref|ZP_00054268.1| COG1181: D-alanine-D-alanine ligase and related ATP-grasp enzymes
           [Magnetospirillum magnetotacticum MS-1]
          Length = 306

 Score =  261 bits (667), Expect = 9e-68,   Method: Compositional matrix adjust.
 Identities = 137/306 (44%), Positives = 193/306 (63%), Gaps = 14/306 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVG---LVLAHLKPDLAFNV 57
           + VLMGG S+ER+VSL SG A A ALE AGF+V+ +D +R+       +   +PD+ FN 
Sbjct: 6   VTVLMGGASAERDVSLRSGAAAAKALEQAGFEVTLVDCNRNPAELVRAITETQPDVVFNA 65

Query: 58  LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117
           LHG FGEDG VQ +L LL +PYTHSG+LASA +MDK  ++ +  + G+PV    +V R  
Sbjct: 66  LHGRFGEDGCVQGVLNLLGVPYTHSGLLASAAAMDKGFARALFQAAGIPVAEGRVVTRAE 125

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN-HGDQLLIEQYVDGIE 176
                 +  P+V+KPL  GSS+G+ +++++Q  PL     + W    D++L+E +V G E
Sbjct: 126 STGPDPLPRPFVVKPLNEGSSVGVFIVRENQPSPL-----ADWPFDADEVLVESFVPGRE 180

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           LT  VMGD +L V EI   +  FY YE KY+   S H++PA I    Y E  RLA  AH+
Sbjct: 181 LTVAVMGDKALGVLEI-TSEHGFYDYEAKYAPGGSRHIMPAPIASADYAEACRLAVAAHK 239

Query: 237 AIGCRGISRSDFLFDPLS----RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           A+GCRG+SR+D  +D  +     ++  LE+N QPGMT  S+ PE+AA+ G +F  L+ WM
Sbjct: 240 ALGCRGVSRADLRYDDTTPGRPPRLVMLEVNTQPGMTATSLVPEIAAHQGITFPALVRWM 299

Query: 293 VEDASC 298
           VE+A C
Sbjct: 300 VEEARC 305


>gi|103487362|ref|YP_616923.1| D-alanine--D-alanine ligase [Sphingopyxis alaskensis RB2256]
 gi|123379717|sp|Q1GRY2|DDL_SPHAL RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|98977439|gb|ABF53590.1| D-alanine--D-alanine ligase [Sphingopyxis alaskensis RB2256]
          Length = 308

 Score =  256 bits (655), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 135/300 (45%), Positives = 193/300 (64%), Gaps = 5/300 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG S+EREVSL SGK  A ALE  G KV++ID+DR V L LA  KPD+ FN LHG
Sbjct: 8   VAVLMGGWSAEREVSLMSGKGVADALESRGHKVTRIDMDRDVALRLAEAKPDVVFNALHG 67

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG VQ +L+L+   YTHSG++ S +++DK  +KQ +   G+P+    +V+  ++ S
Sbjct: 68  VPGEDGTVQGMLDLMGFRYTHSGLVTSVIAIDKELTKQALVPHGIPMPTGTMVDSESLFS 127

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSI--PLDLLQSSSWNHGDQLLIEQYVDGIELT 178
              +  PYV+KP+  GSS+G+ +++ D +   P+       W   D+LL E ++ G ELT
Sbjct: 128 VDPLPRPYVLKPVNEGSSVGVAIVRDDSNYGNPISRDALGPWQQFDRLLAEPFIKGRELT 187

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             V+GD +L VTE+ V KS FY Y+ KY+   + HV PA +P D+ + ++ LA  AH+ +
Sbjct: 188 VAVLGDTALAVTELRV-KSGFYDYDAKYTDGLTEHVCPADVPDDVAQRMKDLALQAHRLL 246

Query: 239 GCRGISRSDFLFDPLS--RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           GC+G SRSDF +D       +F LE+N QPGMTP+S+ PE A   G  + EL+  +VE+A
Sbjct: 247 GCKGASRSDFRWDDEHGLAGIFLLEVNTQPGMTPLSLVPEQARAVGMDYAELVERIVEEA 306


>gi|148556844|ref|YP_001264426.1| D-alanine--D-alanine ligase [Sphingomonas wittichii RW1]
 gi|190359229|sp|A5VDC2|DDL_SPHWW RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|148502034|gb|ABQ70288.1| D-alanine--D-alanine ligase [Sphingomonas wittichii RW1]
          Length = 312

 Score =  255 bits (652), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 131/300 (43%), Positives = 194/300 (64%), Gaps = 5/300 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSEREVSL+SG   A ALE  G KV++ID+DR V L LA  KPD+ FN LHG
Sbjct: 7   IAVLMGGWSSEREVSLTSGNGVADALESLGHKVTRIDMDRDVALRLAEAKPDVVFNALHG 66

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG VQ +++L+ + YTHSG+  S +++DK  +KQ +   G+ +   I+V   ++ +
Sbjct: 67  TPGEDGTVQGMMDLMGLTYTHSGLTTSVIAIDKELTKQQLVPHGIRMPEGIIVESESLHA 126

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKK--DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
              +  PYV+KP+  GSS+G+ +IK+  +  +P+       W     LL E ++ G ELT
Sbjct: 127 GDPMPRPYVLKPVNEGSSVGVAIIKERDNHGVPIHRDSHGPWQTFATLLAEPFIRGRELT 186

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             V+G+ +L VTE+ VP S FY YE KY+   +TH+ PA +P DI +   R+A  AH+ +
Sbjct: 187 VAVLGNRALGVTEL-VPSSGFYDYEAKYTDGLTTHICPADVPADIAEAAMRMALDAHRLL 245

Query: 239 GCRGISRSDFLFDPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           GC+G SRSDF +D    +  ++ LE+N QPGMTP+S+ PE A + G ++ +L+  +V++A
Sbjct: 246 GCKGTSRSDFRWDDERGEAGLYLLEVNTQPGMTPLSLVPEQARHVGLTYADLVQAIVDEA 305


>gi|114327090|ref|YP_744247.1| D-alanine--D-alanine ligase [Granulibacter bethesdensis CGDNIH1]
 gi|122327928|sp|Q0BV28|DDL_GRABC RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|114315264|gb|ABI61324.1| D-alanine--D-alanine ligase [Granulibacter bethesdensis CGDNIH1]
          Length = 307

 Score =  254 bits (649), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 132/301 (43%), Positives = 188/301 (62%), Gaps = 8/301 (2%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--DLAFNVLHG 60
           VL GGIS ER VSL SG+   +AL +AG++V+ I+V   +   +A L P  D+ FN LHG
Sbjct: 8   VLYGGISEERAVSLISGQQVVAALREAGYEVTPIEVGADLRDTIAALTPAPDVVFNALHG 67

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG +Q +L+ L IPYTHSG+ ASA++MDK  ++    + G+PV    LV    +  
Sbjct: 68  RFGEDGAIQGVLDWLNIPYTHSGVRASAIAMDKAAARTAFLAAGLPVAEGRLVTVEELAE 127

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           Q  +  P+VIKP   GS++G+ ++ +  +   ++  + SW+ G Q L+E+Y+ G ELT G
Sbjct: 128 QDPLPRPFVIKPANEGSAVGVHILHEGDNRRTEI--ARSWSFGGQALVEEYIPGRELTVG 185

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V+ D +L VT+I  P+S FY YE KY+   S H+LPA++  D +K    +A  AH A+GC
Sbjct: 186 VLNDRALTVTDIR-PRSAFYDYESKYAEGGSRHILPAQMHPDAFKRALDVALAAHHALGC 244

Query: 241 RGISRSDFLFDPLSR---KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           RG +RSDF +D       ++  LE+N QPG+TP S+ PE AA  G  F  L  WMVE A+
Sbjct: 245 RGATRSDFRYDDTRAEPGRLVLLEVNTQPGLTPTSLLPEQAALMGMDFVSLCRWMVEQAT 304

Query: 298 C 298
           C
Sbjct: 305 C 305


>gi|114766763|ref|ZP_01445700.1| D-alanine--D-alanine ligase [Pelagibaca bermudensis HTCC2601]
 gi|114541020|gb|EAU44077.1| D-alanine--D-alanine ligase [Roseovarius sp. HTCC2601]
          Length = 271

 Score =  254 bits (648), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 123/274 (44%), Positives = 178/274 (64%), Gaps = 10/274 (3%)

Query: 30  GFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
           G++V+++D  R +   L  L PD+ FN LHG +GEDG VQ +LE + +PYTHSG+LASA+
Sbjct: 5   GYQVTEVDAGRDLAQRLEALAPDVVFNALHGRWGEDGCVQGLLEWMGLPYTHSGVLASAV 64

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS 149
           +MDK RSK+V  + G+PV  S+L ++  + ++H+++PPYV+KP   GSS+G+ ++++  +
Sbjct: 65  AMDKERSKEVYRAAGLPVVESVLASKAEISARHMMAPPYVVKPYNEGSSVGVYLVQEGAN 124

Query: 150 IPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209
            P  + +    +  D L++E Y  G ELT  VMGD +L VT+I      +Y Y+ KY   
Sbjct: 125 TPPRIAE----DMPDTLMVETYAPGRELTTTVMGDRALTVTDIIT--EGWYDYDAKYKEG 178

Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR---KVFWLEINVQP 266
            S H LPA +P +I+      A  AH+A+GCRG+SR+DF +D  SR    +  LE N QP
Sbjct: 179 GSRHELPADVPAEIFDACLAYALRAHEALGCRGVSRTDFRWDE-SRGLDGLILLETNTQP 237

Query: 267 GMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           GMTP S+ PE A + G SF  L+ WMVEDASC R
Sbjct: 238 GMTPTSLVPEQAQHCGMSFGALMRWMVEDASCNR 271


>gi|58038646|ref|YP_190610.1| D-alanine--D-alanine ligase [Gluconobacter oxydans 621H]
 gi|81352633|sp|Q5FUJ2|DDL_GLUOX RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|58001060|gb|AAW59954.1| D-alanine--D-alanine ligase [Gluconobacter oxydans 621H]
          Length = 303

 Score =  253 bits (647), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 130/300 (43%), Positives = 188/300 (62%), Gaps = 6/300 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---PDLAFNV 57
           +AVL+GG SSER VSL SG+A   AL + G  V+ IDV   +   +A LK   PD+ FN 
Sbjct: 3   VAVLLGGTSSERPVSLVSGEAAIEALREKGHDVTPIDVGPDIATTIASLKAAAPDVVFNA 62

Query: 58  LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117
           LHG  GEDG +Q +LE L +PYTHSGI ASA++MDK  ++ ++++ G+PV    +V    
Sbjct: 63  LHGPRGEDGAIQGVLEWLGLPYTHSGIRASAVAMDKGATRILLAAAGLPVAQGRVVTVEE 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
           +     +  PYVIKP+  GSS+G+ +++   +   ++  + +W  G + L+E ++ G EL
Sbjct: 123 LAEADPLPAPYVIKPVAEGSSVGVEIVRTGDNRRAEI--ARTWRFGKEALVESFIPGREL 180

Query: 178 TCGVMGDASLDVTEIAVPKSD-FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           T GVMGD +L VT+I   ++  FY +E KY +  S HV+PA++P  +       A  AHQ
Sbjct: 181 TAGVMGDRALAVTDILPSETAAFYDFEAKYKAGGSRHVVPAELPQAVTDRALDYALRAHQ 240

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            +GC+G SR+DF +D  +  +  LE+N QPGMTP S+ PE AAY G S+ EL  WMV +A
Sbjct: 241 TLGCQGASRTDFRYDEGTDTLVILEVNTQPGMTPTSLLPEQAAYCGISYPELCDWMVREA 300


>gi|296532817|ref|ZP_06895492.1| D-alanine--D-alanine ligase [Roseomonas cervicalis ATCC 49957]
 gi|296266854|gb|EFH12804.1| D-alanine--D-alanine ligase [Roseomonas cervicalis ATCC 49957]
          Length = 303

 Score =  253 bits (647), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 136/299 (45%), Positives = 197/299 (65%), Gaps = 6/299 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL---KPDLAFNV 57
           +AVL GGIS+EREVSLS+G    +AL  AGF+V+ ++V   +  ++A L   KPD  FN 
Sbjct: 4   VAVLFGGISTEREVSLSTGGQVVTALRQAGFQVTPVEVTSDLAALVAALQAAKPDAVFNA 63

Query: 58  LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117
           LHG FGEDG VQ +L+ L IPYTHSG+ AS+++MDK  +K V ++ G+P+    +V    
Sbjct: 64  LHGRFGEDGCVQGVLDWLGIPYTHSGVRASSVAMDKAAAKAVFAAHGLPLAEHRVVTPAE 123

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
           +++   +  PYV+KP+  GSS+G+ ++K+  +   ++  + +W  G Q++ E+Y+ G EL
Sbjct: 124 LEAADPLERPYVVKPVSEGSSVGVEILKEGDNRRAEI--ARNWRFGPQIMAEEYIAGREL 181

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           T  VMGD  L VTEI      FY Y+ KY++  S H +PA+IP D+ +  +  A  AHQA
Sbjct: 182 TVAVMGDRPLAVTEIGTGHV-FYDYDAKYAAGGSRHTIPAEIPGDVAEAAKAAALRAHQA 240

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +GCRG+SRSDF +D  + K+  LE+N QPG+TP S+ PE AA+ G SF EL  WMV +A
Sbjct: 241 LGCRGVSRSDFRYDDATGKLALLEVNTQPGLTPTSLVPEQAAHCGISFAELCAWMVREA 299


>gi|56551730|ref|YP_162569.1| D-alanine--D-alanine ligase [Zymomonas mobilis subsp. mobilis ZM4]
 gi|241762278|ref|ZP_04760359.1| D-alanine/D-alanine ligase [Zymomonas mobilis subsp. mobilis ATCC
           10988]
 gi|260752695|ref|YP_003225588.1| D-alanine--D-alanine ligase [Zymomonas mobilis subsp. mobilis NCIMB
           11163]
 gi|81550526|sp|Q9RNM9|DDL_ZYMMO RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|5834367|gb|AAD53933.1|AF179611_17 D-alanine:D-alanine ligase [Zymomonas mobilis subsp. mobilis ZM4]
 gi|56543304|gb|AAV89458.1| D-alanine/D-alanine ligase [Zymomonas mobilis subsp. mobilis ZM4]
 gi|241373181|gb|EER62811.1| D-alanine/D-alanine ligase [Zymomonas mobilis subsp. mobilis ATCC
           10988]
 gi|258552058|gb|ACV75004.1| D-alanine/D-alanine ligase [Zymomonas mobilis subsp. mobilis NCIMB
           11163]
          Length = 321

 Score =  252 bits (644), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 129/298 (43%), Positives = 192/298 (64%), Gaps = 5/298 (1%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62
           VLMGG SSERE+SL SG+    ALE+AG++V+ +D+DR +   L   KPD+ FN LHG  
Sbjct: 9   VLMGGWSSEREISLLSGRHVGKALEEAGYRVTLLDMDRDIAFKLREAKPDVVFNALHGTP 68

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
           GEDG +Q +++L+ I YTHSG+ ASA+++DK  +K++++   +P+    LV R ++ ++ 
Sbjct: 69  GEDGSIQGLMDLMAIRYTHSGLTASAIAIDKELTKKILTPENIPMPQGCLVERESLYTKD 128

Query: 123 LISPPYVIKPLKGGSSLGIIVIKK--DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            +  PYV+KP+  GSS+G+ +I +  +   P+   Q   W +   LL E ++ G ELT  
Sbjct: 129 PLPRPYVLKPVNEGSSVGVAIIDESFNDGQPIRKDQIDPWKNFKTLLAEPFIKGRELTVA 188

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           VMGD +L VTE+  P + FY Y+ KY+   +TH+ PAKIP +I ++   L+  AHQ +GC
Sbjct: 189 VMGDKALAVTELC-PNNGFYDYKAKYTDGMTTHICPAKIPAEIAEKAMALSLKAHQLLGC 247

Query: 241 RGISRSDFLFDPLS--RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           RG SRSDF +D  +    +F LE+N QPGMTP+S+ PE A   G  +  L   +VE+A
Sbjct: 248 RGPSRSDFRWDDEAGLDGLFLLEVNTQPGMTPLSLVPEQAKQLGIDYVALCRMIVEEA 305


>gi|163732128|ref|ZP_02139574.1| D-alanine--D-alanine ligase [Roseobacter litoralis Och 149]
 gi|161394426|gb|EDQ18749.1| D-alanine--D-alanine ligase [Roseobacter litoralis Och 149]
          Length = 283

 Score =  251 bits (642), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 129/289 (44%), Positives = 179/289 (61%), Gaps = 8/289 (2%)

Query: 14  VSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILE 73
           +SLSSG+ACA+AL D G+ V +ID  + +G  L  + PD   N LHG +GEDG VQ +LE
Sbjct: 1   MSLSSGQACAAALRDEGYDVVEIDAGQHLGARLIDVGPDAVLNCLHGRWGEDGCVQGLLE 60

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPL 133
            + +PY+HSG+LASAL+MDK RSK+   + G+PV PS++     +   H++ PPYV+KP 
Sbjct: 61  WMGVPYSHSGVLASALAMDKQRSKEAFVAAGLPVVPSVIAKAADVRIGHVMQPPYVVKPN 120

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
             GSS+G+ ++ +  + P  L    S +   ++++E +  G ELT  V+GD  L VT+I 
Sbjct: 121 NEGSSVGVYLVHEAANGPPQL----SEDMPQEVMVEAFAPGRELTTTVVGDRPLTVTDIV 176

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
                +Y Y+ KY    S HV+PA IP DI+      A  AH A+GCRG+SR+DF +D  
Sbjct: 177 T--DGWYDYDAKYKPGGSHHVVPADIPADIFDMCMDYALRAHHALGCRGVSRTDFRWDET 234

Query: 254 --SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
             +  +  LE N QPGMT  S+ PE AA  G  F +L  WMVEDASC R
Sbjct: 235 KGAAGLILLETNTQPGMTATSLSPEQAAATGMPFGKLCAWMVEDASCDR 283


>gi|89055244|ref|YP_510695.1| D-alanine--D-alanine ligase [Jannaschia sp. CCS1]
 gi|122498273|sp|Q28NP2|DDL_JANSC RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|88864793|gb|ABD55670.1| D-alanine--D-alanine ligase [Jannaschia sp. CCS1]
          Length = 316

 Score =  249 bits (637), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 131/310 (42%), Positives = 192/310 (61%), Gaps = 18/310 (5%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQID-----VDRSVGLVLAHLKPDLAFNV 57
           VLMGG S+EREVSLS+G+ CA AL   GF V ++D         +   L  ++PD+ FN 
Sbjct: 13  VLMGGPSAEREVSLSTGRGCAEALRGEGFDVIEVDPGVTHAGAELCARLQEIQPDVVFNA 72

Query: 58  LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117
           LHG +GEDG VQ +LE + +PYTHSG+L+SAL+MDK R+K  + + G+PV  SI+  +  
Sbjct: 73  LHGRWGEDGCVQGLLEWMRLPYTHSGVLSSALAMDKTRAKTALKAHGLPVVDSIIAPKEA 132

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
           + + H+++ PYV+KP   GSS+G+ ++ +  + P  L    S +  D++++E Y  G EL
Sbjct: 133 VVAAHVMATPYVVKPNNEGSSVGVYLVNEAANGPPHL----SDDMPDEVMVETYAPGREL 188

Query: 178 TCGVMGDA-----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
           T  V+GDA     +L VT+I      +Y Y+ KY    S HV+PA+IP +I+     +A 
Sbjct: 189 TVSVLGDAPGDPGALTVTDILT--DGWYDYDAKYKPGGSRHVVPAQIPQEIWDACMDMAV 246

Query: 233 LAHQAIGCRGISRSDFLFDPLS--RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
            AH  +GC+G+SR+D+ +D       +  LE+N QPGMTP S+ PE     G SF +L  
Sbjct: 247 RAHTILGCKGVSRTDYRWDEARGLDGLIILEVNTQPGMTPTSLTPEQGEAVGMSFGKLCR 306

Query: 291 WMVEDASCLR 300
           W+VEDA+C R
Sbjct: 307 WLVEDATCDR 316


>gi|307294492|ref|ZP_07574334.1| D-alanine/D-alanine ligase [Sphingobium chlorophenolicum L-1]
 gi|306878966|gb|EFN10184.1| D-alanine/D-alanine ligase [Sphingobium chlorophenolicum L-1]
          Length = 316

 Score =  249 bits (635), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 132/300 (44%), Positives = 191/300 (63%), Gaps = 5/300 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG S+ER VSLSSG+  A ALE  G +V++ID+DR V L L+  +PD+ FN LHG
Sbjct: 8   VAVLMGGWSAERLVSLSSGEGVAKALESRGHRVTRIDMDRDVALRLSETRPDVVFNALHG 67

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG VQ +++L+ + YTHSG+  S +++DK  +KQ +   G+P+    +V   ++  
Sbjct: 68  VPGEDGTVQGMMDLMGLTYTHSGLATSVIAIDKQLTKQALVPHGIPMPGGHIVPSASLFE 127

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKK--DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
              +  PYV+KP+  GSS+G+ ++ +  +   P+       W H D+LL E Y+ G ELT
Sbjct: 128 GDPLPRPYVVKPVNEGSSVGVAIVTEGGNYGSPIGRDVEGPWLHFDELLAEPYIRGRELT 187

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             V+GD +L VTE+  PKS FY ++ KY+   + HV PA IP +I +  + +A  AHQ +
Sbjct: 188 TAVLGDEALLVTELR-PKSGFYDFDAKYTDGMTEHVCPAGIPQEIGEACKAIALRAHQLL 246

Query: 239 GCRGISRSDFLFDPLS--RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           GC+G SRSDF +D       +F LE+N QPGMTP+S+ PE AA  G  + EL+  +VEDA
Sbjct: 247 GCKGASRSDFRWDDTQGVEGLFLLEVNTQPGMTPLSLVPEQAAKLGIDYAELVERIVEDA 306


>gi|148259087|ref|YP_001233214.1| D-alanine--D-alanine ligase [Acidiphilium cryptum JF-5]
 gi|190359105|sp|A5FUL3|DDL_ACICJ RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|146400768|gb|ABQ29295.1| D-alanine--D-alanine ligase [Acidiphilium cryptum JF-5]
          Length = 301

 Score =  249 bits (635), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 132/300 (44%), Positives = 192/300 (64%), Gaps = 6/300 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--DLAFNVL 58
           +AVL+GGIS EREVSL+SG+  A+AL  AG+ V +I+V   +G V+A L P  D  FN L
Sbjct: 4   VAVLLGGISEEREVSLASGRQVAAALRKAGYDVFEIEVGADLGAVIAALTPAPDAVFNAL 63

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
           HG FGEDG +Q +L+ + IPYTHSG+ AS+++MDK  +K V ++ G+P+    +V    +
Sbjct: 64  HGRFGEDGTIQGVLDYMGIPYTHSGVRASSMAMDKGAAKAVFAAAGLPLAQHRIVPLDEL 123

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                +  PYVIKP+  GSS+G+ ++++  +   D+  + +W HG   + E+YV G ELT
Sbjct: 124 AEADPLPRPYVIKPVNEGSSVGVFILREGDNRRADI--ARAWRHGSVAMTEEYVPGRELT 181

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             V+ D +L VTEI      FY Y  KY++  S H +PA +P  +    + +A  AH+A+
Sbjct: 182 VSVLEDRALAVTEIRA--EGFYDYTAKYAAGASRHEIPADVPPSVSARARDVAVAAHRAL 239

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           GCRG +RSDF +D  + ++  LE+N QPGMTP S+ PE AA+ G  F  L  WMVE+A+C
Sbjct: 240 GCRGATRSDFRYDDETDRLVLLEVNTQPGMTPTSLLPEQAAHCGIDFPALCAWMVENAAC 299


>gi|294012774|ref|YP_003546234.1| D-alanine-D-alanine ligase [Sphingobium japonicum UT26S]
 gi|292676104|dbj|BAI97622.1| D-alanine-D-alanine ligase [Sphingobium japonicum UT26S]
          Length = 321

 Score =  246 bits (629), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 131/300 (43%), Positives = 190/300 (63%), Gaps = 5/300 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG S+ER VSLSSG+  A ALE  G +V++ID+DR V L L+  +PD+ FN LHG
Sbjct: 8   VAVLMGGWSAERPVSLSSGEGVAKALESRGHRVTRIDMDRDVALRLSETRPDVVFNALHG 67

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG VQ +++L+   YTHSG+  S +++DK  +KQ +   G+P+    +V   ++  
Sbjct: 68  VPGEDGTVQGMMDLMGFTYTHSGLATSVIAIDKQLTKQALVPHGIPMPGGHIVPSESLFE 127

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKK--DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
              +  PYV+KP+  GSS+G+ ++ +  +   P+       W H ++LL E Y+ G ELT
Sbjct: 128 GDPLPRPYVVKPVNEGSSVGVAIVTEGGNYGSPIGRDVEGPWLHFEELLAEPYIRGRELT 187

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             V+GD +L VTE+  PKS FY ++ KY+   + HV PA IP +I +  + +A  AHQ +
Sbjct: 188 TAVLGDEALLVTELR-PKSGFYDFDAKYTDGMTEHVCPADIPPEIGEACKAIALRAHQLL 246

Query: 239 GCRGISRSDFLFDPLS--RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           GC+G SRSDF +D       +F LE+N QPGMTP+S+ PE AA  G  + EL+  +VEDA
Sbjct: 247 GCKGASRSDFRWDDEQGIEGLFLLEVNTQPGMTPLSLVPEQAARLGIDYAELVERIVEDA 306


>gi|114773358|ref|ZP_01450562.1| D-alanine--D-alanine ligase [alpha proteobacterium HTCC2255]
 gi|114546292|gb|EAU49203.1| D-alanine--D-alanine ligase [alpha proteobacterium HTCC2255]
          Length = 304

 Score =  245 bits (626), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 131/303 (43%), Positives = 187/303 (61%), Gaps = 10/303 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VL GG S EREVSL SG   ASAL   G+ VS ID D ++   +    PD+ FN LHG
Sbjct: 9   VTVLNGGPSVEREVSLVSGNEIASALRGEGYIVSIIDADENLAPKITASNPDVVFNALHG 68

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG VQ +LE ++IPYTHSG+ +SAL+MDK ++K V  + G+PV  S+LV++  + +
Sbjct: 69  RWGEDGCVQGLLEWMQIPYTHSGVYSSALAMDKEKTKDVYRAAGLPVAASMLVSKSEILN 128

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            H +  PYV+KP   GSS+G+ ++      P+  ++       D L++E+++ G ELT  
Sbjct: 129 SHPMPAPYVVKPYNEGSSVGVYIVNSGDK-PISTIKEE---LPDTLMVEEFIPGYELTVT 184

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V+   +L VT I      +Y ++ KY +  S H +PA +P +I+      A  AH+ + C
Sbjct: 185 VLDGNALTVTNIIT--DGWYDFDAKYENGGSHHEIPANLPKEIFDACIDYAERAHECLNC 242

Query: 241 RGISRSDFLFDP---LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           RG+SR+DF +D    LS  +  LE N QPGMTP S+ PE AAY G SF +++ WMVEDAS
Sbjct: 243 RGLSRTDFRWDENLGLS-GLKLLETNTQPGMTPTSLAPEQAAYKGISFGQMVRWMVEDAS 301

Query: 298 CLR 300
           C R
Sbjct: 302 CNR 304


>gi|162148963|ref|YP_001603424.1| UDP-N-acetylenolpyruvoylglucosamine reductase [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|161787540|emb|CAP57136.1| UDP-N-acetylenolpyruvoylglucosamine reductase [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 645

 Score =  245 bits (626), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 128/310 (41%), Positives = 186/310 (60%), Gaps = 15/310 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL---KPDLAFNV 57
           + VL GG+S+ER VSLSSG   ++AL + GF V  +D    +G ++A L   +PD+ FN 
Sbjct: 337 ITVLTGGLSAERTVSLSSGAGISAALREEGFDVRVLDAGPDLGAIVADLTAHRPDVVFNA 396

Query: 58  LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117
           LHG FGEDG +Q +L+ + IPYTHSG+ ASA++MDK  ++    + G+PV    ++    
Sbjct: 397 LHGRFGEDGSIQGVLDWMNIPYTHSGVRASAMAMDKAAARSAFRAAGLPVAQGGVIAIAD 456

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
             +   +  PYVIKPL  GSS+G+ +++   +    +  + +W +G   L+E+++ G EL
Sbjct: 457 FPAADPLPAPYVIKPLNEGSSVGVEIVRPGTNRRAAI--ADAWTYGPLALVEEFIPGREL 514

Query: 178 TCGVMGDASLDVTEIAVPKSD----FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           T GVMGD +L VT+I  P  D    FY Y  KY +  S H+LPA+I  D + +   LA  
Sbjct: 515 TVGVMGDRALTVTDI-TPNPDAGHEFYDYAAKYQNGGSRHILPARIHPDAFAQALDLAVA 573

Query: 234 AHQAIGCRGISRSDFLFDPLS-----RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           AH+A+GC G SR+DF +D         ++  LE+N QPGMTP S+ PE A   G  +  L
Sbjct: 574 AHRALGCAGASRTDFRYDDTQCGDGPGRLVILEVNTQPGMTPTSLLPEQAGACGIPYGAL 633

Query: 289 LLWMVEDASC 298
             WMVE A+C
Sbjct: 634 CRWMVEHAAC 643


>gi|209545283|ref|YP_002277512.1| D-alanine--D-alanine ligase [Gluconacetobacter diazotrophicus PAl
           5]
 gi|209532960|gb|ACI52897.1| D-alanine/D-alanine ligase [Gluconacetobacter diazotrophicus PAl 5]
          Length = 315

 Score =  244 bits (624), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 128/310 (41%), Positives = 186/310 (60%), Gaps = 15/310 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL---KPDLAFNV 57
           + VL GG+S+ER VSLSSG   ++AL + GF V  +D    +G ++A L   +PD+ FN 
Sbjct: 7   ITVLTGGLSAERTVSLSSGAGISAALREEGFDVRVLDAGPDLGAIVADLTAHRPDVVFNA 66

Query: 58  LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117
           LHG FGEDG +Q +L+ + IPYTHSG+ ASA++MDK  ++    + G+PV    ++    
Sbjct: 67  LHGRFGEDGSIQGVLDWMNIPYTHSGVRASAMAMDKAAARSAFRAAGLPVAQGGVIAIAD 126

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
             +   +  PYVIKPL  GSS+G+ +++   +    +  + +W +G   L+E+++ G EL
Sbjct: 127 FPAADPLPAPYVIKPLNEGSSVGVEIVRPGTNRRAAI--ADAWTYGPLALVEEFIPGREL 184

Query: 178 TCGVMGDASLDVTEIAVPKSD----FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           T GVMGD +L VT+I  P  D    FY Y  KY +  S H+LPA+I  D + +   LA  
Sbjct: 185 TVGVMGDRALTVTDI-TPNPDAGHEFYDYAAKYQNGGSRHILPARIHPDAFAQALDLAVA 243

Query: 234 AHQAIGCRGISRSDFLFDPLS-----RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           AH+A+GC G SR+DF +D         ++  LE+N QPGMTP S+ PE A   G  +  L
Sbjct: 244 AHRALGCAGASRTDFRYDDTQCGDGPGRLVILEVNTQPGMTPTSLLPEQAGACGIPYGAL 303

Query: 289 LLWMVEDASC 298
             WMVE A+C
Sbjct: 304 CRWMVEHAAC 313


>gi|330994420|ref|ZP_08318345.1| D-alanine--D-alanine ligase [Gluconacetobacter sp. SXCC-1]
 gi|329758420|gb|EGG74939.1| D-alanine--D-alanine ligase [Gluconacetobacter sp. SXCC-1]
          Length = 313

 Score =  242 bits (617), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 125/308 (40%), Positives = 185/308 (60%), Gaps = 12/308 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---PDLAFNV 57
           +AVLMGG+S+ER+VSL+SG+  A AL   G  V  ID    +  ++  L+   PD  FN 
Sbjct: 6   IAVLMGGLSAERDVSLNSGRNVAEALRGLGHDVRCIDAGADLLAIVRDLRDYGPDAVFNA 65

Query: 58  LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117
           LHG  GEDG +Q +L+ + I YTHSG+ ASA +M+K  ++ V ++ G+PV   +L+    
Sbjct: 66  LHGRLGEDGAIQGVLDWMGIAYTHSGVRASATAMNKDAARTVFAAAGLPVATGMLLTPAE 125

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
           ++    +  PYV+KP+  GSS+G+ ++    +    + +   W+HG  +L+E+Y+ G EL
Sbjct: 126 LEPADPLPAPYVVKPVNEGSSVGVEIVHAGSNRRGAIAR--GWSHGPHVLVEEYIPGREL 183

Query: 178 TCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
           T GV+ D +L VT+I  A     FY YE KY++  S H LPA+I    +     LA  AH
Sbjct: 184 TVGVLDDRALTVTDITPAASGPSFYDYEAKYAAGGSRHELPARIHPAAFARACDLALAAH 243

Query: 236 QAIGCRGISRSDFLFDPLS-----RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +A+GCRG SR+DF +D  +      ++  LE N QPGMTP S+ PE AAY G  +  L  
Sbjct: 244 RALGCRGASRTDFRYDDTAGAEAPGRLVILETNTQPGMTPTSLLPEQAAYCGMDYATLCQ 303

Query: 291 WMVEDASC 298
           WM++ A+C
Sbjct: 304 WMIDHATC 311


>gi|238910316|ref|ZP_04654153.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Tennessee str. CDC07-0191]
          Length = 301

 Score =  242 bits (617), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 123/297 (41%), Positives = 185/297 (62%), Gaps = 7/297 (2%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62
           VL GG S ER++S+ +G+ACA+AL+DAG+    IDVDR++   L  + PD+ FN LHG +
Sbjct: 6   VLCGGFSKERDISMVTGRACAAALKDAGYDAYIIDVDRTLPEKLRQINPDVCFNALHGPY 65

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
           GEDG VQ +L ++ IPYTHSG+ AS+++MDK+++K +    G+ +    L++  T  S  
Sbjct: 66  GEDGSVQGLLNIMGIPYTHSGVGASSIAMDKIKTKAIACQHGIHIAEDQLIDYATYKSME 125

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  PYV+KP+  GSS+   +     +   + L   +W +    ++E+Y+ G ELT  V 
Sbjct: 126 -IPFPYVLKPVNDGSSIATYIFNTPDA---EKLSEQAWIYNTHAMMERYIKGRELTVTVF 181

Query: 183 GDASLDVTEIAVPKSD--FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
            +  + VTEI +P +D  FY++  KY +  S H LPA IP   +      A   H  +GC
Sbjct: 182 MNKPVTVTEI-IPSTDHQFYNFHAKYDTGGSLHSLPADIPDKAFNICMENALAMHILLGC 240

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           RGISRSDF+ +  +  +F+LEIN QPGMTP S+ PE  A+AG SF +L+  +V++A+
Sbjct: 241 RGISRSDFILEENTGNIFFLEINTQPGMTPTSLVPEQLAWAGISFTQLVSLLVDEAT 297


>gi|87199158|ref|YP_496415.1| D-alanine--D-alanine ligase [Novosphingobium aromaticivorans DSM
           12444]
 gi|123490034|sp|Q2G992|DDL_NOVAD RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|87134839|gb|ABD25581.1| D-alanine--D-alanine ligase [Novosphingobium aromaticivorans DSM
           12444]
          Length = 313

 Score =  241 bits (615), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 124/300 (41%), Positives = 188/300 (62%), Gaps = 5/300 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSER VSL SG+  A ALE  G +V++ID+DR V L LA  KPD+ FN LHG
Sbjct: 8   VAVLMGGWSSERPVSLMSGEGVAKALESKGHQVTRIDMDRDVALRLAEAKPDVVFNALHG 67

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +++++ + YTHSG++ S +++DK  +KQ +   G+P+    +V    +  
Sbjct: 68  TPGEDGSIQGLMDIMGLTYTHSGLVTSVIAIDKELTKQALVPHGIPMPGGRMVKTADLYK 127

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSI--PLDLLQSSSWNHGDQLLIEQYVDGIELT 178
              +  PYV+KP+  GSS+G+ ++  + +   P+       W   DQLL E ++ G ELT
Sbjct: 128 ADPLPRPYVLKPVNEGSSVGVAIVTAEGNYGSPISAASKGPWQEFDQLLAEPFIRGRELT 187

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             V+GD +L VTE+  PKS FY ++ KY+   + H+ PA+IP +I +  + +A  AH+ +
Sbjct: 188 TAVIGDRALLVTELR-PKSGFYDFDAKYTEGMTDHICPAEIPDEITEACKDIALRAHRLL 246

Query: 239 GCRGISRSDFLFDPLS--RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           GC+G SRSDF +D       +F LE+N QPGMTP+S+ PE A   G  + +L+  ++ +A
Sbjct: 247 GCKGTSRSDFRWDDEQGVEGLFLLEVNTQPGMTPLSLVPEQARALGMDYSDLVEAIIAEA 306


>gi|294085898|ref|YP_003552658.1| D-alanine--D-alanine ligase [Candidatus Puniceispirillum marinum
           IMCC1322]
 gi|292665473|gb|ADE40574.1| D-alanine--D-alanine ligase [Candidatus Puniceispirillum marinum
           IMCC1322]
          Length = 302

 Score =  241 bits (614), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 125/299 (41%), Positives = 184/299 (61%), Gaps = 7/299 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG +SE  VS  S   C  A   AG+   +++VDR +   LA +KPD  FN LHG
Sbjct: 8   VAVLMGGWTSEASVSRVSASFCGQAARSAGWDAVEVEVDRDIAEKLAEMKPDRCFNALHG 67

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-LVNRFTMD 119
             GEDG +Q +L ++ IPYTHSG++ASAL+MDK+ +K ++++CG+ V  ++ LV    + 
Sbjct: 68  QVGEDGNIQGLLNIMNIPYTHSGLVASALAMDKVLAKMIMTTCGIRVPATLALVEDTHVY 127

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
            +H +   +VIKPL  GSS G++++K     P      S WN   QLL E ++ G ELT 
Sbjct: 128 PEHAMQ-AHVIKPLNDGSSFGVVIVKDGDKAP----ARSLWNTDTQLLCEPFIPGRELTV 182

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
            V+   +L VTEI    S FY ++ KY+   S H+LPA IP D+  +    A  A++A G
Sbjct: 183 AVLEGTALCVTEITSENS-FYDFDAKYAPGGSQHILPADIPEDVTLQACEWAESAYRAFG 241

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           CRG+ R+D+ ++ ++ ++F LEIN QPGMT  S+ PE A + G +  EL+  ++E A C
Sbjct: 242 CRGVIRADYRWNDVTNQLFMLEINTQPGMTATSLVPEQARFVGMTGEELVNHLLETAQC 300


>gi|85373189|ref|YP_457251.1| D-alanine--D-alanine ligase [Erythrobacter litoralis HTCC2594]
 gi|122545201|sp|Q2NCY7|DDL_ERYLH RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|84786272|gb|ABC62454.1| D-alanyl-D-alanine ligase [Erythrobacter litoralis HTCC2594]
          Length = 323

 Score =  240 bits (613), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 127/298 (42%), Positives = 185/298 (62%), Gaps = 5/298 (1%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62
           VLMGG ++EREVSL SG+  A ALE  G  V++ID+DR V   +A   PD+ FN LHG  
Sbjct: 11  VLMGGWANEREVSLMSGEGVAKALEKRGHTVTRIDMDRQVAAKIAEAAPDVVFNALHGVP 70

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
           GEDG VQ +L+L+ +PYTHSG+  S +++DK  +KQ +   G+P+    +V    +  Q 
Sbjct: 71  GEDGTVQGMLDLMGVPYTHSGLATSVIAIDKELTKQQLVPRGIPMPGGRIVQSEDLYQQD 130

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSI--PLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            ++ PYV+KP+  GSS+G+ ++  + +   P+       W    +LL E ++ G ELT  
Sbjct: 131 PLARPYVLKPVNEGSSVGVAIVTDESNYGNPIRRDAPGPWQEFRELLAEPFIRGRELTTA 190

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V+G  +L VTE+  PKS FY ++ KY+   + HV PA IP +I    ++ A  AH+ +GC
Sbjct: 191 VVGGQALAVTELK-PKSGFYDFDAKYTDGMTEHVCPADIPPEIEALCKKYALEAHRILGC 249

Query: 241 RGISRSDFLFDPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           RG SR+D+ +D       +F LE N QPGMTP+S+ PE AAYAG S+ +L+  +VE A
Sbjct: 250 RGTSRTDYRWDDEQGDDGLFVLETNTQPGMTPLSLVPEQAAYAGMSYEDLVEAIVEAA 307


>gi|296284494|ref|ZP_06862492.1| D-alanine--D-alanine ligase [Citromicrobium bathyomarinum JL354]
          Length = 321

 Score =  240 bits (612), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 127/304 (41%), Positives = 185/304 (60%), Gaps = 5/304 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG ++ER VSL SG+  A ALE  G  V++ID+DR V   +A  KPD+ FN LHG
Sbjct: 9   VAVLMGGWANERPVSLMSGEGVAKALEARGHTVTRIDMDRQVAARIAEAKPDIVFNALHG 68

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG VQ +L+L+ +PYTHSG+  S +++DK  +KQ +   G+P+    +V    +  
Sbjct: 69  VPGEDGTVQGMLDLMGVPYTHSGLATSVIAIDKQLTKQALVPRGIPMPGGRIVKTDDLYE 128

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSI--PLDLLQSSSWNHGDQLLIEQYVDGIELT 178
              +  PYV+KP+  GSS+G+ ++  + +   P+       W    +LL E Y+ G ELT
Sbjct: 129 GDPLPRPYVLKPVNEGSSVGVAIVTDESNYGNPIARDAKGPWQEFPELLAEPYIRGRELT 188

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             V+G  +L VTE+ V +S FY +E KY+   + HV PA+IP D+ +   R A  AH+ +
Sbjct: 189 TAVVGGKALGVTELIV-ESGFYDFENKYTDGRTRHVCPAEIPEDVAEACLRYALEAHRIL 247

Query: 239 GCRGISRSDFLFDPLS--RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           GC+G SR+DF +D       +F LE N QPGMTP+S+ PE A Y G S+ +L+  ++ DA
Sbjct: 248 GCKGTSRTDFRWDDQQGLDGLFVLETNTQPGMTPLSLVPEQAKYCGMSYEDLVETIIADA 307

Query: 297 SCLR 300
              R
Sbjct: 308 LADR 311


>gi|94498828|ref|ZP_01305372.1| D-alanine--D-alanine ligase [Sphingomonas sp. SKA58]
 gi|94421716|gb|EAT06773.1| D-alanine--D-alanine ligase [Sphingomonas sp. SKA58]
          Length = 321

 Score =  238 bits (607), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 128/300 (42%), Positives = 188/300 (62%), Gaps = 5/300 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG S+ER VSLSSG+  A ALE  G KV++ID+DR+V   LA  K D+ FN LHG
Sbjct: 8   VAVLMGGWSAERPVSLSSGEGVAKALESRGHKVTRIDMDRNVAQRLAETKADVIFNALHG 67

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG VQ +++L+ + YTHSG+  S +++DK  +KQ +   G+P+    +V   ++ +
Sbjct: 68  VPGEDGTVQGMMDLMGLTYTHSGLATSVIAIDKQLTKQALVPHGIPMPGGHVVESESLFT 127

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSI--PLDLLQSSSWNHGDQLLIEQYVDGIELT 178
              +  PYV+KP+  GSS+G+ ++  + +   P+       W    +LL E Y+ G ELT
Sbjct: 128 ADPLPRPYVLKPVNEGSSVGVAIVTAEGNYGNPIARDAVGPWQDFPELLAEPYIRGRELT 187

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             V+GD +L VTE+  PKS FY ++ KY+   + HV PA IP DI +  + +A  AHQ +
Sbjct: 188 TAVLGDEALLVTELR-PKSGFYDFDAKYTDGMTEHVCPADIPPDISEACKAIALRAHQLL 246

Query: 239 GCRGISRSDFLFDPLS--RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           GC+G SR+DF +D       ++ LE+N QPGMTP+S+ PE AA  G  +  L+  +VE+A
Sbjct: 247 GCKGASRADFRWDDERGLNGLYLLEVNTQPGMTPLSLVPEQAAKLGIDYATLVETIVEEA 306


>gi|83949547|ref|ZP_00958280.1| D-alanine--D-alanine ligase [Roseovarius nubinhibens ISM]
 gi|83837446|gb|EAP76742.1| D-alanine--D-alanine ligase [Roseovarius nubinhibens ISM]
          Length = 271

 Score =  237 bits (604), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 125/278 (44%), Positives = 173/278 (62%), Gaps = 10/278 (3%)

Query: 26  LEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
           + D GF+V ++D    +   L  +KPD+ FN LHG +GEDG VQ +LE L IPY+HSG+L
Sbjct: 1   MRDEGFEVVEVDAGPDLVSRLTEIKPDVVFNALHGRWGEDGCVQGLLEWLRIPYSHSGVL 60

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145
           ASAL+MDK +SK V    G+PV  S+L  R  + ++H+++PPYV+KP   GSS+G+ ++ 
Sbjct: 61  ASALAMDKQKSKDVYRRAGLPVVESVLAPRDEVRARHVMAPPYVVKPNNEGSSVGVYIVH 120

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205
           +  + P  L    S +  + +++E Y  G ELT  V+GD +L VT+I      +Y Y  K
Sbjct: 121 EAANAPPQL----SDDMPETVMVETYAPGRELTTSVLGDRALGVTDIIT--EGWYDYHAK 174

Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV---FWLEI 262
           YS   S H  PA +P +I +     A  AH A+GCRG+SR+DF +D  +R V     LE 
Sbjct: 175 YSVGGSRHEFPANLPKEITEACLDYAQRAHAALGCRGLSRTDFRWDE-ARGVDGLIVLET 233

Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           N QPGMTP S+ PE AA  G SF +L  W+VEDASC R
Sbjct: 234 NTQPGMTPTSLSPEQAAGIGMSFGQLCRWIVEDASCDR 271


>gi|254967031|gb|ACT97551.1| putative D-alanine-D-alanine ligase [uncultured organism]
 gi|254967042|gb|ACT97557.1| putative D-alanine-D-alanine ligase [uncultured organism]
 gi|254967050|gb|ACT97561.1| putative D-alanine-D-alanine ligase [uncultured organism]
          Length = 301

 Score =  236 bits (603), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 125/302 (41%), Positives = 184/302 (60%), Gaps = 12/302 (3%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--LAHLKPDLAFNVLHG 60
           VLMGG S+EREVSL++GK   +AL+ AG++V   D+     LV  L   KPD+ FN LHG
Sbjct: 7   VLMGGFSAEREVSLTTGKCVCAALKKAGYEVVSHDLQNGFELVETLKKEKPDVVFNALHG 66

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCG--VPVCPSILVNRFTM 118
           N+GEDG +Q  L++L++PYTHSG+ AS L MDK  +K++ S  G  VP    +   +F  
Sbjct: 67  NWGEDGEIQGFLDVLQVPYTHSGLKASVLGMDKSLTKELASENGIKVPQGEKMTFRKFKA 126

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           +   L   PYV+KP+  GSS+G+ +I+K +       ++  +    ++LIE+++DG ELT
Sbjct: 127 EGTFL-KMPYVVKPVSDGSSVGVYIIRKKEDA-----EAVRYEDDREILIEEFIDGKELT 180

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           C V+G  +  VTE+     +FY Y  KY++  + H+LPA+IP +     +  A   H  +
Sbjct: 181 CMVLGSQAHVVTELRAS-DEFYDYHAKYTAGATQHILPAEIPEEAANRCKLYAEHMHNIL 239

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           GCR +SR DF ++P    V  LEIN  PGMT +S+ PE A Y G  +  L  ++VE+ASC
Sbjct: 240 GCRSVSRCDFRYNP-EDGVVLLEINTAPGMTDLSLVPEQAKYIGIGYERLCSYLVENASC 298

Query: 299 LR 300
            +
Sbjct: 299 RK 300


>gi|197116892|ref|YP_002137319.1| D-alanine--D-alanine ligase [Geobacter bemidjiensis Bem]
 gi|226696387|sp|B5EBQ4|DDL_GEOBB RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|197086252|gb|ACH37523.1| D-alanine--D-alanine ligase [Geobacter bemidjiensis Bem]
          Length = 305

 Score =  235 bits (600), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 129/298 (43%), Positives = 191/298 (64%), Gaps = 7/298 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG+S+EREVSL+SGKA  ++L   GF+   IDV R +   LA  + +LAF  LHG
Sbjct: 11  IAVLMGGLSAEREVSLNSGKAVLASLVKQGFRAVGIDVGRDLPQRLAEEQVELAFIALHG 70

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG VQ +LEL+ IPYT SG+LASAL++DK+ SK + +S G+ + P  ++ R   + 
Sbjct: 71  RFGEDGSVQGLLELMGIPYTGSGVLASALAIDKIASKVIFASAGLKLAPYQVLRR--GEE 128

Query: 121 QHLISP-PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
             L +P P V+KP + GSS+G+ +++    +   L    ++ +  ++LIE ++DG E+  
Sbjct: 129 LKLANPLPVVVKPSREGSSVGVGIVRDPSRMQAAL--DEAFRYDSEILIEGFIDGREVQV 186

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
           G++   +L   EI +PK +FY YE KY+   + H+LPA++P  +Y EV R    AH A+G
Sbjct: 187 GILNGKALGAIEI-IPKGEFYDYEAKYTDGGAQHILPARLPEAVYAEVLRQGEKAHAALG 245

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           C   SR DFL    +   F LE+N  PGMT +S+ PE+A  AG +F EL+L +++ AS
Sbjct: 246 CDCYSRVDFLVTE-TGDCFLLEVNTLPGMTDLSLLPEIAGGAGIAFGELVLRILQAAS 302


>gi|296116440|ref|ZP_06835054.1| D-alanine--D-alanine ligase [Gluconacetobacter hansenii ATCC 23769]
 gi|295977033|gb|EFG83797.1| D-alanine--D-alanine ligase [Gluconacetobacter hansenii ATCC 23769]
          Length = 314

 Score =  235 bits (599), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 130/310 (41%), Positives = 192/310 (61%), Gaps = 15/310 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL---KPDLAFNV 57
           ++VLMGG+S+EREVSL SG     AL   G+ V Q+     +G +++ L   +PD+ FN 
Sbjct: 6   ISVLMGGMSAEREVSLKSGAGVTDALRSLGYPVRQVIAGEDLGALVSELTTHRPDVVFNA 65

Query: 58  LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117
           LHG FGEDG +Q +L+ + I YTHSG+  SA++MDK  ++ V ++ G+PV    +V    
Sbjct: 66  LHGRFGEDGSIQGVLDWMGIAYTHSGVRTSAVAMDKAAARAVFTAAGLPVARGTVVAMSE 125

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
           +++   +  PYVIKPL  GSS+G+ +I+   +    + +  SW  G   L+E+++ G EL
Sbjct: 126 LEAADPLPVPYVIKPLNEGSSVGVHIIRAGANTRASIAR--SWRFGTSALVEEFIPGREL 183

Query: 178 TCGVMGDASLDVTEIAVPKSD----FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           T GVMGD +L VT+I  P+ D    FY Y+ KY    S+HVLPA+I  D ++  + LA  
Sbjct: 184 TVGVMGDRALTVTDI-TPRDDGGNGFYDYDAKYQQGGSSHVLPARIHPDAFEHARALALA 242

Query: 234 AHQAIGCRGISRSDFLFDPL-----SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           AH+A+GCRG SR+DF +D       + ++  LE N QPGMT  S+ PE AA  G ++ +L
Sbjct: 243 AHRALGCRGASRTDFRYDDTRDPDGAGRLVILETNTQPGMTETSLLPEQAAACGVAYPQL 302

Query: 289 LLWMVEDASC 298
             W+VE A+C
Sbjct: 303 CQWLVEQATC 312


>gi|253699160|ref|YP_003020349.1| D-alanine/D-alanine ligase [Geobacter sp. M21]
 gi|259645167|sp|C6DZK9|DDL_GEOSM RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|251774010|gb|ACT16591.1| D-alanine/D-alanine ligase [Geobacter sp. M21]
          Length = 305

 Score =  235 bits (599), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 130/298 (43%), Positives = 191/298 (64%), Gaps = 7/298 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG+S+EREVSL+SGKA  ++L   GF+   IDV R +   LA  K ++AF  LHG
Sbjct: 11  IAVLMGGLSAEREVSLNSGKAVLASLVRQGFQAVGIDVGRDLPQRLAEEKAEVAFIALHG 70

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG VQ +LEL+ IPYT SG+LASAL++DK+ SK + +S G+ + P  ++ R   + 
Sbjct: 71  RFGEDGSVQGLLELMGIPYTGSGVLASALAIDKIASKVIFASAGLTLAPYQVLRR--GEE 128

Query: 121 QHLISP-PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
             L +P P V+KP + GSS+G+ +++    +   L    ++ +  ++LIE ++DG E+  
Sbjct: 129 FKLANPLPVVVKPSREGSSVGVGIVRDPSRMQAAL--DEAFRYDSEILIEGFIDGREVQV 186

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
           G++   +L   EI VPK +FY YE KY+   + H+LPA++P  +Y EV R    AH A+G
Sbjct: 187 GILDGKALGAIEI-VPKGEFYDYEAKYTDGGAQHILPARLPEAVYGEVLRQGEKAHAALG 245

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           C   SR DFL    +   F LE+N  PGMT +S+ PE+A  AG +F EL+L +++ AS
Sbjct: 246 CDCYSRVDFLVTE-TGDCFLLEVNTLPGMTDLSLLPEIAGGAGITFGELVLRILQAAS 302


>gi|332187083|ref|ZP_08388823.1| D-alanine--D-alanine ligase family protein [Sphingomonas sp. S17]
 gi|332012783|gb|EGI54848.1| D-alanine--D-alanine ligase family protein [Sphingomonas sp. S17]
          Length = 314

 Score =  234 bits (596), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 126/301 (41%), Positives = 188/301 (62%), Gaps = 7/301 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG S+ER VSL SG   A ALE AG +V++ID+ R V   L   +PDL FN LHG
Sbjct: 7   IAVLMGGWSAERPVSLMSGAGVADALERAGHRVTRIDMGRDVAARLVEAQPDLVFNALHG 66

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
           + GEDG VQ +L+L+ I YTHSG+  S +++DK+ +KQ +   G+P+    +V    + +
Sbjct: 67  SPGEDGTVQGMLDLMGIAYTHSGLATSVIAIDKVLTKQALVPHGIPMPGGRIVKSEELFA 126

Query: 121 QHLISPPYVIKPLKGGSSLGIIVI--KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
              +  PYV+KP+  GSS+G+ ++    +   P+    +  W   ++LL E Y+ G ELT
Sbjct: 127 GDPLPRPYVLKPVNEGSSVGVAIVTDTSNHGNPIARDVAGPWAEFEELLAEPYIRGRELT 186

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             V+G+ +L VTE+  PK+ +Y ++ KY+   + HV PA+IP +I +  + LA  AH+ +
Sbjct: 187 TAVLGNRALGVTELK-PKNGWYDFDAKYTDGLTEHVCPAQIPDEIAEACKSLALEAHRIL 245

Query: 239 GCRGISRSDFLFDPLSRKV---FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           GCRG SRSDF +D   R V   F LE+N QPGMTP+S+ PE   + G  +  L+  +V++
Sbjct: 246 GCRGASRSDFRWDD-ERGVDGLFLLEVNTQPGMTPLSLVPEQGRHVGMDYDTLVQAIVDE 304

Query: 296 A 296
           A
Sbjct: 305 A 305


>gi|85707769|ref|ZP_01038835.1| D-alanyl-D-alanine ligase [Erythrobacter sp. NAP1]
 gi|85689303|gb|EAQ29306.1| D-alanyl-D-alanine ligase [Erythrobacter sp. NAP1]
          Length = 332

 Score =  234 bits (596), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 127/304 (41%), Positives = 186/304 (61%), Gaps = 9/304 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG ++EREVSL SG   + ALE  G +V+QID+DR V   +   KPD+ FN LHG
Sbjct: 18  VAVLMGGWANEREVSLMSGAGVSDALEMNGHRVTQIDMDRDVAQRITEAKPDVVFNALHG 77

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG VQ +L+L+ + YTHSG+  S +++DK  +KQ +   GVP     +V    +  
Sbjct: 78  VPGEDGSVQGMLDLMGVAYTHSGMATSVIAIDKQLTKQALIPHGVPFPGGRIVATKDIFE 137

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSI--PLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           +  +  PYV+KP+  GSS+G+ ++ +D ++  P++      W   DQLL E ++ G ELT
Sbjct: 138 RDPLPRPYVLKPVNEGSSVGVAIVTEDSNVGNPINRDAPGPWQQFDQLLAEPFIKGRELT 197

Query: 179 CGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
             V+    G  +L VTE+ + +  FY YE KY+   + HV PA IP +I    +  A  A
Sbjct: 198 TAVIDGADGPRALGVTELII-EHGFYDYEHKYTEGRTQHVCPADIPAEIAALCEDYAIRA 256

Query: 235 HQAIGCRGISRSDFLFDPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           H+ +GC G SR+DF +D  + +  +F LE N QPGMTP+S+ PE A +AG S+ EL+  +
Sbjct: 257 HKVLGCHGTSRTDFRWDDEAGEDGLFVLETNTQPGMTPLSLVPEQAKHAGISYPELVELI 316

Query: 293 VEDA 296
           V +A
Sbjct: 317 VREA 320


>gi|326388921|ref|ZP_08210503.1| D-alanine--D-alanine ligase [Novosphingobium nitrogenifigens DSM
           19370]
 gi|326206521|gb|EGD57356.1| D-alanine--D-alanine ligase [Novosphingobium nitrogenifigens DSM
           19370]
          Length = 313

 Score =  233 bits (595), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 126/300 (42%), Positives = 183/300 (61%), Gaps = 5/300 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG S+ER VSL SG   A ALE  G KV++ID+ R +   LA   PD+ FN LHG
Sbjct: 8   VAVLMGGWSNERPVSLMSGNGVADALESRGHKVTRIDMGRDIAQRLAEAAPDVVFNALHG 67

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG VQ +++L+ + YTHSG+ AS +++DK  +KQ +   G+P+    +V    +  
Sbjct: 68  TPGEDGTVQGMMDLMGLTYTHSGLTASVIAIDKELTKQALVPHGIPMPGGRIVKSEDIFV 127

Query: 121 QHLISPPYVIKPLKGGSSLG--IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           +  +  PYV+KP+  GSS+G  I+ ++ +   P+       W   D LL E Y+ G ELT
Sbjct: 128 RDPLPRPYVLKPVNEGSSVGVAIVTVEGNYGNPIGRETVGPWQAFDHLLAEPYIRGRELT 187

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             V+GD++L VTE+  PKS FY ++ KY+   + H+ PA IP +I +  + +A  AH+ +
Sbjct: 188 TAVLGDSALLVTELR-PKSGFYDFDAKYTDGMTDHICPADIPEEIAQACKDIALKAHRLL 246

Query: 239 GCRGISRSDFLFDPLS--RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           GCRG SRSDF +D       +F LE+N QPGMTP+S+ PE A   G  +  L+  +V +A
Sbjct: 247 GCRGTSRSDFRWDDEQGIDGLFLLEVNTQPGMTPLSLVPEQARALGMDYATLVEAIVAEA 306


>gi|157803467|ref|YP_001492016.1| D-alanine--D-alanine ligase [Rickettsia canadensis str. McKiel]
 gi|189083046|sp|A8EXZ8|DDL_RICCK RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|157784730|gb|ABV73231.1| D-alanylalanine synthetase [Rickettsia canadensis str. McKiel]
          Length = 354

 Score =  233 bits (594), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 119/297 (40%), Positives = 187/297 (62%), Gaps = 3/297 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +A++ GG+S+EREVSL S K  + AL   G+KV+ ID+   +   L  +KPD+ FN LHG
Sbjct: 58  IALVAGGMSAEREVSLVSSKGVSKALIALGYKVTFIDMGADIAFKLQEIKPDIVFNCLHG 117

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG +  +L ++ IPYTHSG+L+SAL+ DK+ S+    +  + +  SI+VN+     
Sbjct: 118 TYGEDGCLSGLLNIMRIPYTHSGVLSSALAFDKIYSRSWFLTNNINMAESIVVNKSDNIK 177

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  PYVIKP+  GSS+GI VI ++         +  + +GDQ++IE+Y+ G EL   
Sbjct: 178 IEPMKRPYVIKPITQGSSIGIEVIFEEDDFN---FANYDFPYGDQVIIEKYIKGRELQVA 234

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V+   +L V EI + K+ FY YE KY+   + H+ PA IP ++Y ++   +   ++ + C
Sbjct: 235 VLNGKALGVLEIKLLKNRFYDYETKYTEGFAEHLCPAPIPTNLYDKLLIESEKIYKTMNC 294

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           +G +R +FL +  + K++ LEIN  PGMTP+SI PE+AAYAG +F  L+  +++ AS
Sbjct: 295 KGPARVEFLLEDQTNKLYALEINTHPGMTPLSIVPEIAAYAGINFTNLIEEIIKAAS 351


>gi|254450575|ref|ZP_05064012.1| D-alanine--D-alanine ligase [Octadecabacter antarcticus 238]
 gi|198264981|gb|EDY89251.1| D-alanine--D-alanine ligase [Octadecabacter antarcticus 238]
          Length = 270

 Score =  232 bits (592), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 122/278 (43%), Positives = 172/278 (61%), Gaps = 11/278 (3%)

Query: 26  LEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
           +  AGF V +ID    +   L   KPD  FN LHG + EDG+VQ +LE L IPYTHSG+L
Sbjct: 1   MRTAGFDVVEIDAGVDLVERLKLAKPDAVFNALHGRWCEDGVVQGVLEWLRIPYTHSGVL 60

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145
           ASA +MDK ++K +  + G+P   S+L ++  +++ H++ PPYV+KP   GSS+GI ++ 
Sbjct: 61  ASATAMDKQKTKDIYRAHGLPFVESVLASKSQIEAAHVLPPPYVVKPYDEGSSVGIYMVM 120

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205
           +  S P     + + +  D +++E Y  G ELT  V+G  +L VT+I V    +Y Y  K
Sbjct: 121 EGDSPP-----TLAADLPDLMMVETYAPGRELTTAVLGTRALTVTDIVV--DGWYDYASK 173

Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR---KVFWLEI 262
           Y    S HV+PA +P DI++     A  AH A+GCRG+SR+D+ +D  SR    +  LE 
Sbjct: 174 YEVDGSIHVIPANLPDDIFQACMDYAVRAHDALGCRGLSRTDYRWDE-SRGLDGLILLET 232

Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           N QPGMTP S+ PE AA  G SF +L+ WM+EDASC R
Sbjct: 233 NTQPGMTPTSLAPEQAASCGISFPDLMTWMIEDASCNR 270


>gi|67459427|ref|YP_247051.1| D-alanine--D-alanine ligase [Rickettsia felis URRWXCal2]
 gi|75536158|sp|Q4UKP1|DDL_RICFE RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|67004960|gb|AAY61886.1| D-alanine--D-alanine ligase [Rickettsia felis URRWXCal2]
          Length = 321

 Score =  232 bits (592), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 117/299 (39%), Positives = 191/299 (63%), Gaps = 7/299 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +A++ GG+S+EREVSL S +  + AL + G+KV+ ID+   + + L  +KPD+ FN LHG
Sbjct: 25  IALVAGGMSAEREVSLVSSEGVSKALIELGYKVTFIDMGADIAVKLQEIKPDIVFNCLHG 84

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG +  +L ++ IPYTHSG+L+SAL+ DK+ S+    +  + +  SI+VN+     
Sbjct: 85  TYGEDGCLPGLLNIMRIPYTHSGVLSSALAFDKIHSRSWFLTNNINMAESIIVNKSDNIK 144

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN--HGDQLLIEQYVDGIELT 178
              +  PYVIKPL  GSS+G+ VI ++     D    + +N  +G Q++IEQY+ G EL 
Sbjct: 145 SDPVKRPYVIKPLTQGSSIGVEVIFEE-----DDFNFADYNFPYGYQVIIEQYIKGRELQ 199

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             V+   +L   EI + K+ FY YE KY+   + H+ PA +P ++Y+++   +   ++ +
Sbjct: 200 VAVLNGKALGALEIKLLKNRFYDYETKYTEGFAEHLCPAPLPTNLYEKLLVESEKIYKTM 259

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
            C+G +R++F+ +  + K++ LEIN  PGMTP+SI PE+AAYAG +F  L+  +++ AS
Sbjct: 260 NCKGPARAEFILEEQTNKLYALEINTHPGMTPLSIVPEIAAYAGINFTNLIEEIIKTAS 318


>gi|51473447|ref|YP_067204.1| D-alanine--D-alanine ligase [Rickettsia typhi str. Wilmington]
 gi|81390201|sp|Q68XC0|DDL_RICTY RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|51459759|gb|AAU03722.1| Alanine:alanine ligase (ADP-forming) [Rickettsia typhi str.
           Wilmington]
          Length = 321

 Score =  230 bits (587), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 117/298 (39%), Positives = 191/298 (64%), Gaps = 5/298 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +A++ GG+S+EREVSL S    + AL + G+KV+ ID+   + + L  + PD+ FN LHG
Sbjct: 25  IALVAGGMSAEREVSLISSVGVSKALIELGYKVTFIDMGADIAVKLQEINPDIVFNCLHG 84

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG +  +L ++ IPYTHSG+L+SAL+ DK+ S+       + +  SI+V++    +
Sbjct: 85  TYGEDGCLPGLLNIMRIPYTHSGVLSSALAFDKIHSRSCFLKNNINMADSIVVSKSDHIN 144

Query: 121 QHLISPPYVIKPLKGGSSLGI-IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
              +  PYVIKPLK GSS+G+ ++ ++D    +D      + +G+ ++IEQY+ G EL  
Sbjct: 145 TDPMKRPYVIKPLKQGSSIGVEVIFEEDDFHFIDY----DFPYGEDIIIEQYIQGQELQV 200

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
            ++   +L V EI + K+ FY YE KY+   + HV PA++P ++YK++   +   ++ I 
Sbjct: 201 ALLNGKALGVLEIKLLKNRFYDYETKYNKGFAKHVCPAQLPANLYKKLLIESEKIYKTIN 260

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           C+G  R++F+ +  + K++ LEIN  PGMTP+SI PE+AAYAG SF  L+  +++ AS
Sbjct: 261 CKGPVRAEFILEEQTNKLYVLEINTHPGMTPLSIVPEIAAYAGISFTNLIEEIIKMAS 318


>gi|229586498|ref|YP_002844999.1| D-alanine--D-alanine ligase [Rickettsia africae ESF-5]
 gi|259645172|sp|C3PMU6|DDL_RICAE RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|228021548|gb|ACP53256.1| D-alanine--D-alanine ligase [Rickettsia africae ESF-5]
          Length = 321

 Score =  230 bits (587), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 115/297 (38%), Positives = 189/297 (63%), Gaps = 3/297 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +A+++GG+S+EREVSL S +  + AL + G++V+ ID+   + + L  +KPD+ FN LHG
Sbjct: 25  IALMVGGMSAEREVSLVSSEGVSKALIELGYRVTFIDMGADIAVRLQEIKPDIVFNCLHG 84

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG +  +L ++ IPYTHSG+L+SAL+ DK+ S+    +  + +  SI+VN+     
Sbjct: 85  TYGEDGCLPGLLNIMRIPYTHSGMLSSALAFDKIHSRIWFLTNNINMAESIVVNKSDNIK 144

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  PYVIKPL  GSS+G+ VI  +            + +GDQ++IEQY+ G EL   
Sbjct: 145 NDPMKRPYVIKPLTQGSSIGVEVIFAEDDFN---FADYDFPYGDQVIIEQYIKGRELQVA 201

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V+   +L   EI + K+ FY YE KY+   + H+ PA +P ++Y+++   +   ++ + C
Sbjct: 202 VLNGKALGALEIKLLKNRFYDYETKYTEGFADHLCPAPLPANLYEKLLIESEKIYKTMNC 261

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           +G +R++F+ +  + K++ LEIN  PGMTP+SI PE+AAYAG +F  L+  +++ AS
Sbjct: 262 KGPARAEFILEEQTNKLYALEINTHPGMTPLSIVPEIAAYAGINFTNLIEEIIKMAS 318


>gi|222053884|ref|YP_002536246.1| D-alanine/D-alanine ligase [Geobacter sp. FRC-32]
 gi|221563173|gb|ACM19145.1| D-alanine/D-alanine ligase [Geobacter sp. FRC-32]
          Length = 308

 Score =  230 bits (586), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 123/299 (41%), Positives = 185/299 (61%), Gaps = 6/299 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VLMGG S+EREVSL SG A   AL   G+    IDVDR+V   +     + AF  LHG
Sbjct: 9   IGVLMGGFSAEREVSLKSGAAVLKALVGLGYNAVGIDVDRNVATKIVAEGINAAFIALHG 68

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF-TMD 119
            +GEDG +Q +LEL+ IPYT SG+LASAL+M+K+ +KQ   + G+ V P  +V R    D
Sbjct: 69  RYGEDGAIQGLLELMAIPYTGSGVLASALAMNKIFAKQAFQAAGLTVAPYRVVCRGEVFD 128

Query: 120 SQHLISP-PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           ++    P P V+KP + GSS+G+ +++++    L+     ++ +  ++LIEQ++ G E+ 
Sbjct: 129 AKTFTFPFPVVVKPSQEGSSVGVSIVRQESE--LEAAMQDAFKYDREILIEQFIKGAEVQ 186

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
            G++ D +L   EI VPK +FY +E KYS   + H+LPA++P D+Y++V R     H+A+
Sbjct: 187 VGILEDKALGAIEI-VPKKEFYDFEAKYSPGMAEHILPARLPADLYEKVLRAGEEGHRAL 245

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           GC G SR DFL        + LE+N  PGMT +S+ PE+A  +G  F EL+  ++  A+
Sbjct: 246 GCSGYSRVDFLVTT-EGLCYILEVNTLPGMTDLSLLPEIARGSGIEFGELVERLISAAT 303


>gi|34580724|ref|ZP_00142204.1| D-alanine--D-alanine ligase [Rickettsia sibirica 246]
 gi|28262109|gb|EAA25613.1| D-alanine--D-alanine ligase [Rickettsia sibirica 246]
          Length = 321

 Score =  229 bits (585), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 114/297 (38%), Positives = 187/297 (62%), Gaps = 3/297 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +A++ GG+S+EREVSL S +  + AL + G++V+ ID+   + + L  +KPD+ FN LHG
Sbjct: 25  IALMAGGMSAEREVSLVSSEGVSKALIELGYRVTFIDMGADIAVRLQEIKPDIVFNCLHG 84

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG +  +L ++ IPYTHSG+L+SAL+ DK+ S+    +  + +  SI+VN+     
Sbjct: 85  TYGEDGCLPGLLNIMRIPYTHSGVLSSALAFDKIHSRIWFLTNNINMAESIVVNKSDNIK 144

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  PYVIKPL  GSS+G+ VI  +            + +GDQ++IEQY+ G EL   
Sbjct: 145 NDPMKRPYVIKPLTQGSSIGVEVIFAEDDFN---FADYDFPYGDQVIIEQYIKGRELQVA 201

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V+   +L   EI + K+ FY YE KY+   + H+ PA +P ++Y+++   +   ++ + C
Sbjct: 202 VLNGKALGALEIKLLKNRFYDYETKYTEGFADHLCPAPLPANLYEKLLIESEKLYKTMNC 261

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           +G +R++F+ +  + K++ LEIN  PGM P+SI PE+AAYAG +F  L+  +++ AS
Sbjct: 262 KGPARAEFILEEQTNKLYALEINTHPGMMPLSIVPEIAAYAGINFTNLIAEIIKTAS 318


>gi|157964319|ref|YP_001499143.1| D-alanine--D-alanine ligase [Rickettsia massiliae MTU5]
 gi|167012331|sp|A8F110|DDL_RICM5 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|157844095|gb|ABV84596.1| D-alanine--D-alanine ligase [Rickettsia massiliae MTU5]
          Length = 321

 Score =  229 bits (585), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 114/297 (38%), Positives = 189/297 (63%), Gaps = 3/297 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +A++ GG+S+EREVSL S +  + AL + G+ V+ ID+   + + L  +KPD+ FN LHG
Sbjct: 25  IALMAGGMSAEREVSLVSSEGVSKALIELGYSVTFIDMGADITVRLQEIKPDIVFNCLHG 84

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG +  +L ++ IPYTHSG+L+SAL+ +K+ S+    +  + +  SI+VN+     
Sbjct: 85  TYGEDGCLPGLLNIMRIPYTHSGMLSSALAFNKIHSRSWFLTNNINMAESIVVNKSDNIK 144

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  PYVIKPL  GSS+G+ VI  + +          + +GDQ++IEQY+ G EL   
Sbjct: 145 NDPMKRPYVIKPLTQGSSIGVEVIFAEDNFN---FADYDFPYGDQVIIEQYIKGRELQVA 201

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V+   +L V EI + K+ FY YE KY+   + H+ PA +P ++Y+++   +   ++ + C
Sbjct: 202 VLNGKALGVLEIKLLKNRFYDYETKYTEGFADHLCPAPLPANLYEKLLIESEKIYKTMNC 261

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           +G +R++F+ +  + K++ LE+N  PGMTP+SI PE+AAYAG +F  L+  +++ AS
Sbjct: 262 KGPARAEFILEEQTNKLYALELNTHPGMTPLSIVPEIAAYAGINFTNLIEEIIKTAS 318


>gi|15604119|ref|NP_220634.1| D-alanine--D-alanine ligase [Rickettsia prowazekii str. Madrid E]
 gi|6919859|sp|Q9ZDS6|DDL_RICPR RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|3860811|emb|CAA14711.1| D-ALANINE--D-ALANINE LIGASE (ddlB) [Rickettsia prowazekii]
 gi|292571845|gb|ADE29760.1| D-alanine--D-alanine ligase [Rickettsia prowazekii Rp22]
          Length = 321

 Score =  229 bits (584), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 115/297 (38%), Positives = 187/297 (62%), Gaps = 3/297 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +A++ GG+S+EREVSL S    + AL + G+KV+ +D+   + + L  + PD+ FN LHG
Sbjct: 25  IALVAGGMSAEREVSLVSSAGVSKALIELGYKVTFVDMGADIAVKLQEINPDIVFNCLHG 84

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG +  +L ++ IPYTHSG+L+SAL+ DK+  +  V    + +  SI+V++    +
Sbjct: 85  TYGEDGCLPGLLNIMRIPYTHSGLLSSALAFDKIHFRSCVLKNNINIADSIVVSKSDHIN 144

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  PYVIKPLK GSS+G+ VI ++            + +G+ ++IEQY+ G EL   
Sbjct: 145 TDPMKRPYVIKPLKQGSSIGVEVIFEEDDFN---FTDYDFPYGEDIIIEQYIQGQELQVA 201

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           ++   +L V EI + K+ FY YE KY+   + HV PA +P ++YK++   +   ++ I C
Sbjct: 202 LLNGKALGVLEIKLLKNRFYDYETKYNEGFAEHVCPAPLPANLYKKLLIESEKIYKTINC 261

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           +G  R++F+ +  + K++ LEIN  PGMTP+SI PE+AAYAG +F  L+  +++ AS
Sbjct: 262 KGPVRAEFILEEQTNKLYVLEINTHPGMTPLSIVPEIAAYAGINFTNLIEEIIKMAS 318


>gi|157827096|ref|YP_001496160.1| D-alanine--D-alanine ligase [Rickettsia bellii OSU 85-389]
 gi|166198502|sp|A8GW96|DDL_RICB8 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|157802400|gb|ABV79123.1| D-alanine--D-alanine ligase [Rickettsia bellii OSU 85-389]
          Length = 321

 Score =  228 bits (582), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 113/297 (38%), Positives = 186/297 (62%), Gaps = 3/297 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +A++ GG+S+EREVSL S +    AL +AG+KV+ ID+   + + L  +KPD+ FN LHG
Sbjct: 25  IALVAGGMSAEREVSLISAEGVGKALIEAGYKVTFIDMGADIAVKLHEIKPDIVFNCLHG 84

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG +  +L ++ IPYTHSG+LAS+L+ DK+ S+    +  + +  SI++++     
Sbjct: 85  TYGEDGCLPGLLNIMRIPYTHSGVLASSLAFDKVHSRSWFLTNNINMAESIVISKGDNIK 144

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  PYVIKP   GSS+G+ VI ++         +  + +GD+++IE+Y+ G EL   
Sbjct: 145 TDPIKRPYVIKPFTQGSSIGVEVIFEEDDFN---FANYDFPYGDEVIIEKYIKGRELQVA 201

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           ++   +L   EI + K+ FY YE KY+   + H+ PA +P DIY ++ + +   +  + C
Sbjct: 202 ILNGKALGALEIKLLKNRFYDYETKYTEGFAEHLCPAPLPTDIYDKLLKESEKIYNTMNC 261

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           +G +R++F+ +  + K++ LEIN  PGMTP+SI PE+AAY G  F  L+  +++ AS
Sbjct: 262 KGAARAEFILEDGTNKLYALEINTHPGMTPLSIVPEIAAYHGIDFVNLIEEILKTAS 318


>gi|254441192|ref|ZP_05054685.1| D-ala D-ala ligase N-terminal domain protein, putative
           [Octadecabacter antarcticus 307]
 gi|198251270|gb|EDY75585.1| D-ala D-ala ligase N-terminal domain protein, putative
           [Octadecabacter antarcticus 307]
          Length = 277

 Score =  228 bits (582), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 120/285 (42%), Positives = 173/285 (60%), Gaps = 18/285 (6%)

Query: 26  LEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
           +  AGF V +ID    +   L  +KPD+ FN LHG + EDG+VQ +LE L IPYTHSG+L
Sbjct: 1   MRTAGFNVVEIDAGVDLVEQLKSVKPDVVFNALHGRWCEDGVVQGVLEWLRIPYTHSGVL 60

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145
           ASA++MDK ++K++  + G+P   S+L  +  +++ H+++PPYV+KP   GSS+GI ++ 
Sbjct: 61  ASAMAMDKQKTKEIYRAHGLPFVSSVLATKTEIEAAHVMTPPYVVKPYDEGSSVGIYLVM 120

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA-------SLDVTEIAVPKSD 198
           +    P       + +  D +++E Y  G ELT  V+G         +L VT+I V    
Sbjct: 121 EGDRPP-----ELAADLPDLMMVEVYAPGRELTTAVLGAGAEYSESRALTVTDIVV--DG 173

Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR--- 255
           +Y Y  KY    STH +PA +P DI +     A  AH  +GCRG+SR+D+ +D  SR   
Sbjct: 174 WYDYAAKYEIGGSTHTIPANLPDDISRACMDYAVRAHDVLGCRGLSRTDYRWDE-SRGLD 232

Query: 256 KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
            +  LE N QPGMTP S+ PE AA+ G SF +L+ WM+EDASC R
Sbjct: 233 GLILLETNTQPGMTPTSLAPEQAAFCGISFPDLMTWMIEDASCNR 277


>gi|99035926|ref|ZP_01314973.1| hypothetical protein Wendoof_01000181 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 317

 Score =  228 bits (581), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 121/298 (40%), Positives = 187/298 (62%), Gaps = 5/298 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +A+L GG S ERE+SL SGKA   AL+   +   +IDVD ++   L  + P LAF  LHG
Sbjct: 7   IAILSGGFSCEREISLMSGKAVKKALDSLSYNAIEIDVDSNIAEKLKKINPGLAFIALHG 66

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG +Q +LE+L I YTHSG++ASA++++K+ SK +  S  +      +++R  +  
Sbjct: 67  PYGEDGCIQGLLEILGIKYTHSGVMASAVAINKVMSKHIFRSLNIDTPKGYVISREDVLK 126

Query: 121 QHL-ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
            ++ I  PYV+KP+  GSS+G+ +I   +   L+L  +SS    +++++E+Y+ GIEL  
Sbjct: 127 NNIKIDYPYVLKPINEGSSIGVYIIFSHEDY-LELKNNSSTIM-EKMIVEEYIPGIELHT 184

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
            V+ D ++   E+  PK+ FY YE KY+   + H+ PAKIP +IYK     A   HQ +G
Sbjct: 185 AVLLDEAIGTIEVR-PKNKFYDYEAKYTDGFAEHIFPAKIPDNIYKMTLEHALKIHQFLG 243

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYA-GYSFRELLLWMVEDA 296
           C+ ISRSDF ++P +  +  LEIN  PG T +S+ PE+A  A G +F EL+  ++ED+
Sbjct: 244 CKTISRSDFRYNPKNNTLKMLEINTHPGFTELSLVPEIAKLAKGINFNELVKIIIEDS 301


>gi|42520004|ref|NP_965919.1| D-alanine--D-alanine ligase [Wolbachia endosymbiont of Drosophila
           melanogaster]
 gi|81831298|sp|Q73IQ8|DDL_WOLPM RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|42409741|gb|AAS13853.1| D-alanine--D-alanine ligase [Wolbachia endosymbiont of Drosophila
           melanogaster]
          Length = 315

 Score =  228 bits (580), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 121/298 (40%), Positives = 187/298 (62%), Gaps = 5/298 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +A+L GG S ERE+SL SGKA   AL+   +   +IDVD ++   L  + P LAF  LHG
Sbjct: 5   IAILSGGFSCEREISLMSGKAVKKALDSLSYNAIEIDVDSNIAEKLKKINPGLAFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG +Q +LE+L I YTHSG++ASA++++K+ SK +  S  +      +++R  +  
Sbjct: 65  PYGEDGCIQGLLEILGIKYTHSGVMASAVAINKVMSKHIFRSLNIDTPKGYVISREDVLK 124

Query: 121 QHL-ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
            ++ I  PYV+KP+  GSS+G+ +I   +   L+L  +SS    +++++E+Y+ GIEL  
Sbjct: 125 NNIKIDYPYVLKPINEGSSIGVYIIFSHEDY-LELKNNSSTIM-EKMIVEEYIPGIELHT 182

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
            V+ D ++   E+  PK+ FY YE KY+   + H+ PAKIP +IYK     A   HQ +G
Sbjct: 183 AVLLDEAIGTIEVR-PKNKFYDYEAKYTDGFAEHIFPAKIPDNIYKMTLEHALKIHQFLG 241

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYA-GYSFRELLLWMVEDA 296
           C+ ISRSDF ++P +  +  LEIN  PG T +S+ PE+A  A G +F EL+  ++ED+
Sbjct: 242 CKTISRSDFRYNPKNNTLKMLEINTHPGFTELSLVPEIAKLAKGINFNELVKIIIEDS 299


>gi|225630001|ref|YP_002726792.1| D-alanine--D-alanine ligase [Wolbachia sp. wRi]
 gi|259645176|sp|C0R5F9|DDL_WOLWR RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|225591982|gb|ACN95001.1| D-alanine--D-alanine ligase [Wolbachia sp. wRi]
          Length = 317

 Score =  227 bits (579), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 121/298 (40%), Positives = 187/298 (62%), Gaps = 5/298 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +A+L GG S ERE+SL SGKA   AL+   +   +IDVD ++   L  + P LAF  LHG
Sbjct: 7   IAILSGGFSCEREISLMSGKAVKKALDSLSYNAIEIDVDSNIAEKLKKINPGLAFIALHG 66

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG +Q +LE+L I YTHSG++ASA++++K+ SK +  S  +      +++R  +  
Sbjct: 67  PYGEDGCIQGLLEILGIKYTHSGVMASAVAINKVMSKHIFRSLNIDTPKGYVISREDVLK 126

Query: 121 QHL-ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
            ++ I  PYV+KP+  GSS+G+ +I   +   L+L  +SS    +++++E+Y+ GIEL  
Sbjct: 127 NNIKIDYPYVLKPINEGSSIGVYIIFSHEDY-LELKDNSSTIM-EKMIVEEYIPGIELHT 184

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
            V+ D ++   E+  PK+ FY YE KY+   + H+ PAKIP +IYK     A   HQ +G
Sbjct: 185 AVLLDEAIGTIEVR-PKNKFYDYEAKYTDGFAEHIFPAKIPDNIYKMTLEHALKIHQFLG 243

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYA-GYSFRELLLWMVEDA 296
           C+ ISRSDF ++P +  +  LEIN  PG T +S+ PE+A  A G +F EL+  ++ED+
Sbjct: 244 CKTISRSDFRYNPKNNTLKMLEINTHPGFTELSLVPEIAKLAKGINFNELVKIIIEDS 301


>gi|15892256|ref|NP_359970.1| D-alanine--D-alanine ligase [Rickettsia conorii str. Malish 7]
 gi|22095562|sp|Q92IT7|DDL_RICCN RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|15619394|gb|AAL02871.1| D-alanine--D-alanine ligase [Rickettsia conorii str. Malish 7]
          Length = 321

 Score =  227 bits (579), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 113/297 (38%), Positives = 186/297 (62%), Gaps = 3/297 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +A++ GG+S+EREVSL S +  + AL + G++V+ ID+   + + L  +KPD+ FN LHG
Sbjct: 25  IALMAGGMSAEREVSLVSSEGVSKALIELGYRVTFIDMGADIAVRLQEIKPDIVFNCLHG 84

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG +  +L ++ IPYTHSG+L+SAL+ DK+ S+    +  + +   I+VN+     
Sbjct: 85  TYGEDGCLPGLLNIMRIPYTHSGVLSSALAFDKIHSRIWFLTNNINMAEGIVVNKSDNIK 144

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  PYVIKPL  GSS+G+ VI  +            + +GDQ++IEQY+ G EL   
Sbjct: 145 NDPMKRPYVIKPLTQGSSIGVEVIFAEDDFN---FADYDFPYGDQVIIEQYIKGRELQVA 201

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V+   +L   EI + K+ FY YE KY+   + H+ PA +P ++Y+++   +   ++ + C
Sbjct: 202 VLNGKALGALEIKLLKNRFYDYETKYTEGFADHLCPAPLPANLYEKLLIESEKIYKTMNC 261

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           +G +R++F+ +  + K++ LEIN  PGM P+SI PE+AAYAG +F  L+  +++ AS
Sbjct: 262 KGPARAEFILEEQTNKLYALEINTHPGMMPLSIVPEIAAYAGINFTNLIEEIIKTAS 318


>gi|239947809|ref|ZP_04699562.1| D-alanine--D-alanine ligase [Rickettsia endosymbiont of Ixodes
           scapularis]
 gi|239922085|gb|EER22109.1| D-alanine--D-alanine ligase [Rickettsia endosymbiont of Ixodes
           scapularis]
          Length = 321

 Score =  227 bits (579), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 113/297 (38%), Positives = 188/297 (63%), Gaps = 3/297 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +A++ GG+S+E EVSL S +    AL + G++V+ ID+   + + L  +KPD+ FN LHG
Sbjct: 25  VALVAGGMSAECEVSLVSSEGVRKALVELGYRVTFIDMGADIAVRLQEIKPDIVFNCLHG 84

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG +  +L ++ IPYTHSG+L+SAL+ DK+ S+    +  + +  SI+VN+     
Sbjct: 85  TYGEDGCLPGLLNIMRIPYTHSGVLSSALAFDKIHSRSWFLTNNINMVESIVVNKSNDVR 144

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  PYVIKPLK GSS+G+ VI ++ +          + +GDQ++IEQY+ G EL   
Sbjct: 145 NDPMKRPYVIKPLKQGSSIGVEVIFEEDNFN---FADYDFPYGDQVIIEQYIKGRELQVA 201

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V+   +L   EI + K+ FY YE KY+   + H+ PA +P ++Y+++   +   ++ + C
Sbjct: 202 VLNGKALGALEIKLLKNRFYDYETKYTEGFAEHLCPAPLPANLYEKLLIESEKIYKTMNC 261

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           +G +R++F+ +  + K++ LE+N  PGM P+SI PE+AAYAG +F  L+  +++ AS
Sbjct: 262 KGPARAEFILEEQTNKLYALEMNTHPGMAPLSIVPEIAAYAGINFTNLIEEIIKTAS 318


>gi|91205776|ref|YP_538131.1| D-alanine--D-alanine ligase [Rickettsia bellii RML369-C]
 gi|122425436|sp|Q1RHX2|DDL_RICBR RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|91069320|gb|ABE05042.1| D-alanine--D-alanine ligase [Rickettsia bellii RML369-C]
          Length = 321

 Score =  227 bits (578), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 113/297 (38%), Positives = 185/297 (62%), Gaps = 3/297 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +A++ GG+S+EREVSL S +    AL +AG+KV+ ID+   + + L  +KPD+ FN LHG
Sbjct: 25  IALVAGGMSAEREVSLISAEGVGKALIEAGYKVTFIDMGADITVKLHEIKPDIVFNCLHG 84

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG +  +L ++ IPYTHSG+LAS+L+ DK+ S+    +  + +  SI++++     
Sbjct: 85  TYGEDGCLPGLLNIMRIPYTHSGVLASSLAFDKVHSRSWFLTNNINMAESIVISKGDNIK 144

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  PYVIKP   GSS+G+ VI ++         +  + +GD+++IE+Y+ G EL   
Sbjct: 145 TDPIKRPYVIKPFTQGSSIGVEVIFEEDDFN---FANYDFPYGDEVIIEKYIKGRELQVA 201

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           ++   +L   EI + K+ FY YE KY+   + H+ PA +P DIY ++ + +   +  + C
Sbjct: 202 ILNGKALGALEIKLLKNRFYDYETKYTEGFAEHLCPAPLPTDIYDKLLKESEKIYNTMNC 261

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           +G +R +F+ +  + K++ LEIN  PGMTP+SI PE+AAY G  F  L+  +++ AS
Sbjct: 262 KGAARVEFILEDGTNKLYALEINTHPGMTPLSIVPEIAAYHGIDFVNLIEEILKTAS 318


>gi|149186199|ref|ZP_01864513.1| D-alanyl-D-alanine ligase [Erythrobacter sp. SD-21]
 gi|148830230|gb|EDL48667.1| D-alanyl-D-alanine ligase [Erythrobacter sp. SD-21]
          Length = 329

 Score =  226 bits (577), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 124/308 (40%), Positives = 186/308 (60%), Gaps = 11/308 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG ++ER VSL SG+  A ALE+ G KV++ID+DR V   +A +KPD+ FN LHG
Sbjct: 13  IAVLMGGWANERPVSLMSGEGVAKALEERGHKVTRIDMDRQVAARIAEVKPDVVFNALHG 72

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG VQ +L+L+ + YTHSG+  S +++DK  +KQ +   G+P+    +V    +  
Sbjct: 73  VPGEDGTVQGMLDLMGVAYTHSGLATSVIAIDKQLTKQALVPHGIPMPGGRIVKSADLFD 132

Query: 121 QHLISPPYVIKPLKGGSSLGIIVI--KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           +  +  PYV+KP+  GSS+G+ ++  + +   P+       W    +LL E Y+ G E+T
Sbjct: 133 RDPLPRPYVLKPVNEGSSVGVAIVTDESNHGNPISRSAKGPWQDFAELLAEPYIKGREMT 192

Query: 179 CGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
             V+    G  +L VTE+  PKS FY ++ KY+   + HV PA IP  I      +A  A
Sbjct: 193 AAVVDFPEGPRALAVTELK-PKSGFYDFDAKYTDGLTDHVCPADIPEHIRDLCLEIALKA 251

Query: 235 HQAIGCRGISRSDFLFDPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           H+ +GC+G SR+DF +D    +  +F LE N QPGMTP+S+ PE A +AG  +  L+  +
Sbjct: 252 HKVLGCKGTSRTDFRWDEEEGEDGLFVLETNTQPGMTPLSLVPEQAKFAGIEYGALVETI 311

Query: 293 VEDASCLR 300
           +  A+ LR
Sbjct: 312 I--AAALR 317


>gi|157828212|ref|YP_001494454.1| D-alanine--D-alanine ligase [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|165932915|ref|YP_001649704.1| D-alanine--D-alanine ligase [Rickettsia rickettsii str. Iowa]
 gi|166198503|sp|A8GRC1|DDL_RICRS RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|189083047|sp|B0BWS2|DDL_RICRO RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|157800693|gb|ABV75946.1| D-alanine--D-alanine ligase [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|165908002|gb|ABY72298.1| D-alanine--D-alanine ligase [Rickettsia rickettsii str. Iowa]
          Length = 321

 Score =  225 bits (574), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 113/297 (38%), Positives = 187/297 (62%), Gaps = 3/297 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +A++ GG+S+EREVSL S +  + AL + G++V+ ID+   + + L  +KPD+ FN LHG
Sbjct: 25  IALMAGGMSAEREVSLVSSEGVSKALIELGYRVTFIDMGADIAVRLQEIKPDIVFNCLHG 84

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG +  +L ++ IPYTHSG+L+SAL+ DK+ S+    +  + +  SI+VN+     
Sbjct: 85  TYGEDGGLPGLLNIMRIPYTHSGVLSSALAFDKIHSRIWFLTNNINMAESIVVNKSDNIK 144

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  PYVIKPL  GSS+G+ VI  +            + +GDQ++IEQY+ G EL   
Sbjct: 145 NDPMKRPYVIKPLTQGSSIGVEVIFAEDDFN---FADYDFPYGDQVIIEQYIKGRELQVA 201

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V+   +L   EI + K+ FY YE KY++  + H+ PA +P ++Y+++   +   ++ + C
Sbjct: 202 VLNGKALGALEIKLLKNRFYDYETKYTAGFADHLCPAPLPANLYEKLLIESEKIYKTMNC 261

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           +G +R++F+ +  + K++ LEIN  PGM  +SI PE+AAYAG +F  L+  +++ AS
Sbjct: 262 KGPARAEFILEEQTNKLYALEINTHPGMMSLSIVPEIAAYAGINFTNLIEEIIKTAS 318


>gi|189423736|ref|YP_001950913.1| D-alanine/D-alanine ligase [Geobacter lovleyi SZ]
 gi|229485956|sp|B3E3X9|DDL_GEOLS RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|189419995|gb|ACD94393.1| D-alanine/D-alanine ligase [Geobacter lovleyi SZ]
          Length = 313

 Score =  223 bits (567), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 122/301 (40%), Positives = 187/301 (62%), Gaps = 11/301 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VLMGG+S+ER+VSL SG A   AL   G+  + +DV  +V L+L   K DLAF  LHG
Sbjct: 11  IGVLMGGLSAERDVSLKSGMAVHQALLAMGYDSTALDVRHNVALILREEKIDLAFIALHG 70

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF-TMD 119
            +GEDG +Q +LEL++IPYT SG+LASAL+M K+ SKQ  ++ G+ + P   V +    +
Sbjct: 71  RYGEDGCIQGLLELMQIPYTGSGVLASALAMHKLYSKQAFAAAGLTITPYATVRQGDRCN 130

Query: 120 SQHL-ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           ++ L    P V+KP++ GSS+G+ ++KK + +   L    ++ +   +L+E+Y+ G E+ 
Sbjct: 131 AEQLPFGLPVVVKPVQEGSSVGVTIVKKPEDLQAAL--DEAFRYDTLVLVEKYIKGQEVQ 188

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
            G++ +  +   EI VPK++FY +E KYS   + H+ PA++   +Y++VQ+    AHQA+
Sbjct: 189 VGILANQPIGAIEI-VPKNEFYDFEAKYSDGMAEHIFPARLAEPLYQKVQQQGLQAHQAL 247

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY-AGYSFRELLLWMVEDAS 297
           GC G  R DFL    +   + LE+N  PGMT +S+ PE+A   AG SF  L    VE  +
Sbjct: 248 GCDGYCRVDFLVTE-NGDCYLLEVNTLPGMTALSLLPEIAQKGAGLSFEAL----VEQIA 302

Query: 298 C 298
           C
Sbjct: 303 C 303


>gi|148265982|ref|YP_001232688.1| D-alanine--D-alanine ligase [Geobacter uraniireducens Rf4]
 gi|190359135|sp|A5G8J7|DDL_GEOUR RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|146399482|gb|ABQ28115.1| D-alanine--D-alanine ligase [Geobacter uraniireducens Rf4]
          Length = 310

 Score =  223 bits (567), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 118/291 (40%), Positives = 182/291 (62%), Gaps = 6/291 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VLMGG+S+EREVSL SG A   AL   G+    IDVDR +  VL     D+AF  LHG
Sbjct: 11  IGVLMGGLSAEREVSLKSGAAVHQALLARGYDAVAIDVDRDIAQVLVREWVDVAFIALHG 70

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119
            +GEDG +Q +LE++ IPYT SG+LASAL+M+K+ +KQ   +  + V P  +  R     
Sbjct: 71  RYGEDGAIQGLLEIMGIPYTGSGVLASALAMNKIFAKQAFQAARLTVAPYKVFCRGDKAA 130

Query: 120 -SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            ++   S P V+KP + GSS+G+ ++KK+      + ++  ++   ++L+EQ++ G E+ 
Sbjct: 131 LAELEFSLPVVVKPSQEGSSVGVSIVKKESEFAAAMKEAFRYDR--EILVEQFIKGSEVQ 188

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
            G++ D +L   EI VPK++FY ++ KYS   + H+LPA++P ++Y++V R    AH+A+
Sbjct: 189 VGILEDKALGAIEI-VPKNEFYDFDAKYSPGMAEHILPARLPAELYRKVLRAGEDAHRAL 247

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           GC G SR DFL        + LE+N  PGMT +S+ PE+A  +G  F +L+
Sbjct: 248 GCSGYSRVDFLVTE-EGACYILEVNTLPGMTDLSLLPEIARGSGIGFEDLV 297


>gi|238650473|ref|YP_002916325.1| D-alanine--D-alanine ligase [Rickettsia peacockii str. Rustic]
 gi|259645173|sp|C4K126|DDL_RICPU RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|238624571|gb|ACR47277.1| D-alanine--D-alanine ligase [Rickettsia peacockii str. Rustic]
          Length = 323

 Score =  223 bits (567), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 113/299 (37%), Positives = 187/299 (62%), Gaps = 5/299 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +A++ GG+S+EREVSL S +  + AL + G++V+ ID+   + + L  +KPD+ FN LHG
Sbjct: 25  IALMAGGMSAEREVSLVSSEGVSKALIELGYRVTFIDMGADIAVRLQEIKPDIVFNCLHG 84

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG +  +L ++ IPYTHSG+L+SAL+ +K+ S+    +  + +  SI+VN+     
Sbjct: 85  TYGEDGCLPGLLNIMRIPYTHSGVLSSALAFNKIHSRIWFLTNNINMAESIVVNKSDNIK 144

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV--DGIELT 178
              +  PYVIKPL  GSS+G+ VI  +            + +GDQ++IEQY+   G EL 
Sbjct: 145 NDPMKRPYVIKPLAQGSSIGVEVIFAEDDFN---FADYDFPYGDQVIIEQYIKGQGRELQ 201

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             V+   +L   EI + K+ FY YE KY+   + H+ PA +P ++Y+++   +   ++ +
Sbjct: 202 VAVLNGKALGALEIKLLKNRFYDYETKYTEGFADHLCPAPLPANLYEKLLIESEKIYKTM 261

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
            C+G +R++F+ +  + K++ LEIN  PGM P+SI PE+AAYAG +F  L+  +++ AS
Sbjct: 262 NCKGPARAEFILEEQTNKLYALEINTHPGMMPLSIVPEIAAYAGINFTNLIEEIIKTAS 320


>gi|322421359|ref|YP_004200582.1| D-alanine/D-alanine ligase [Geobacter sp. M18]
 gi|320127746|gb|ADW15306.1| D-alanine/D-alanine ligase [Geobacter sp. M18]
          Length = 305

 Score =  222 bits (566), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 120/298 (40%), Positives = 194/298 (65%), Gaps = 7/298 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG+S+EREVSL+SGKA  ++L   G++   IDV R +   LA  + + AF  LHG
Sbjct: 11  IAVLMGGLSAEREVSLNSGKAVLASLVRQGYQAVGIDVGRDLPQRLAEEQVERAFIALHG 70

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG VQ +LEL+ IPYT SG+LASAL++DK+ +K + ++ G+ + P  +++R   + 
Sbjct: 71  RFGEDGSVQGLLELMAIPYTGSGVLASALAIDKIAAKTMFAAAGLKLAPYQVLSRG--EE 128

Query: 121 QHLISP-PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
             L +P P V+KP + GSS+G+ ++++ Q +   L  + ++ +  ++LIE ++DG E+  
Sbjct: 129 LKLANPLPVVVKPSREGSSVGVSIVREPQQMEKAL--AEAFRYDSEILIEAFIDGKEVQV 186

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
           G++   ++   EI VPK++FY YE KY+   + H+LPA++P  +Y+ V +    AH A+G
Sbjct: 187 GILDGRAMGAIEI-VPKNEFYDYEAKYTDGGAEHILPARLPEQVYQAVLKEGEKAHAALG 245

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           C   SR DFL +  + + + LE+N  PGMT +S+ PE+A  +G  F +L+  ++  AS
Sbjct: 246 CDCYSRVDFLVNE-AGECYLLEVNTLPGMTDLSLLPEIARGSGIDFDQLVQRILLAAS 302


>gi|95930728|ref|ZP_01313461.1| D-alanine--D-alanine ligase [Desulfuromonas acetoxidans DSM 684]
 gi|95133208|gb|EAT14874.1| D-alanine--D-alanine ligase [Desulfuromonas acetoxidans DSM 684]
          Length = 305

 Score =  222 bits (566), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 117/304 (38%), Positives = 187/304 (61%), Gaps = 10/304 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGG S+EREVSL +G A   ALE+ G+ V  ID D+++   L   + D+ F  +HG
Sbjct: 8   IGVIMGGTSAEREVSLRTGAAIVKALEECGYTVVAIDADKTLPAQLIEKQIDVVFLAVHG 67

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG +Q +LEL++IPYT SG+LASAL++DK  +K++V+  GV    + LV+    D 
Sbjct: 68  RFGEDGTIQGMLELMQIPYTGSGVLASALAIDKAVTKRMVAQDGVTTPAATLVD-VNSDV 126

Query: 121 QHLISP----PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
             +++     P V+KP++ GS+LGI +      +   + Q+  ++   ++L+E Y+DG E
Sbjct: 127 DDIVAQCGHFPQVVKPVREGSTLGIAIANNADELKQAIAQARDYDR--RVLVEDYIDGRE 184

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +T  VM   +L + EI VP+S FY Y  KY+   + +++PA +P   YK +Q+ A  ++ 
Sbjct: 185 VTVSVMNGRALSIIEI-VPESGFYDYTAKYTVGKTRYLVPAPLPESQYKAIQQAAVASYA 243

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           ++GCRG +R DF+        ++LE+N  PGMT  S+ P+ AA  G  F +L+  +++DA
Sbjct: 244 SLGCRGAARVDFMV--TDDNFYFLEVNTIPGMTETSLLPKAAADCGMDFAKLVEGILDDA 301

Query: 297 SCLR 300
           S  R
Sbjct: 302 SLDR 305


>gi|225677143|ref|ZP_03788142.1| D-alanine--D-alanine ligase [Wolbachia endosymbiont of Muscidifurax
           uniraptor]
 gi|225590810|gb|EEH12038.1| D-alanine--D-alanine ligase [Wolbachia endosymbiont of Muscidifurax
           uniraptor]
          Length = 337

 Score =  221 bits (564), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 122/318 (38%), Positives = 186/318 (58%), Gaps = 23/318 (7%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +A+L GG S ERE+SL SG+A   AL+   +   +IDVD ++   L  + P LAF  LHG
Sbjct: 5   IAILSGGFSCEREISLMSGRAVKKALDSLSYNAIEIDVDSNIAEKLKKINPGLAFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG +Q +LE+L I YTHSG++ASA++M+K  SK +  S  +      +++R  +  
Sbjct: 65  PYGEDGCIQGLLEILGIKYTHSGVMASAVAMNKAMSKHIFWSLSIDTPKGYVISREDLLK 124

Query: 121 QHL-ISPPYVIKPLKGGSSLGIIVI--------------------KKDQSIPLDLLQSSS 159
            ++ I  PYV+KP+  GSS+G+ ++                    KK  S  LD  + ++
Sbjct: 125 NNIKIDYPYVLKPINEGSSIGVHIVSSHEDYLKLKFDVIPARDQEKKTVSGYLDDKEGAT 184

Query: 160 WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI 219
               D +++E+Y+ GIEL   V+ D ++   EI  PK+ FY YE KY+   + H+ PA+I
Sbjct: 185 SMTKDLMIVEEYIPGIELHTAVLLDEAIGTMEIR-PKNKFYDYEAKYTDGFAEHIFPAEI 243

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279
           P +IYK     A   HQ +GC+ ISRSDF ++P +  +  LEIN  PG T +S+ PE+A 
Sbjct: 244 PDNIYKMTLEHALKVHQFLGCKTISRSDFRYNPKNNTLKMLEINTHPGFTELSLVPEIAK 303

Query: 280 YA-GYSFRELLLWMVEDA 296
            A G +F EL+  ++ED+
Sbjct: 304 LAKGINFNELVKIIIEDS 321


>gi|229918692|ref|YP_002887338.1| D-alanine/D-alanine ligase [Exiguobacterium sp. AT1b]
 gi|229470121|gb|ACQ71893.1| D-alanine/D-alanine ligase [Exiguobacterium sp. AT1b]
          Length = 308

 Score =  220 bits (561), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 130/302 (43%), Positives = 190/302 (62%), Gaps = 12/302 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG+S EREVSL+SG+    AL + G +V+ ID        L  L  D+  + LHG
Sbjct: 3   VAVLYGGVSGEREVSLTSGQGMIEALTERGHEVTAIDFHPERANELLTLDVDVVVSALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV-NRFTMD 119
            +GEDG VQ++LE+  IPYT SG+LASAL+MDK R+K + ++ G+ V   +L+ +R ++D
Sbjct: 63  KYGEDGRVQSLLEMAGIPYTGSGVLASALAMDKARAKIIFAASGIRVARDVLIESRESID 122

Query: 120 SQHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
           ++     +  P V+KP + GSS G + I  D+++  + ++  ++     +L+EQY+ G E
Sbjct: 123 AKVAEWGMEFPCVVKPAQEGSSNG-LTIAMDEAMLREGIE-KAFACDSAVLVEQYIKGKE 180

Query: 177 LTCGVMG----DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
           LT  V+G    + +L V EI +PK++FY YE KY+   S HV PA+I  D+  EVQ+ A 
Sbjct: 181 LTVPVIGNFGKEEALPVIEI-IPKNEFYDYESKYTEGGSIHVCPAEISDDLTSEVQQAAV 239

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           LAH+A+GC G SRSDFL      K + LE N  PGMTP+S+FP+ A   G S+ ELL   
Sbjct: 240 LAHRALGCSGYSRSDFLVSE-EGKAYILETNTLPGMTPLSLFPDSAKTVGISYGELLERF 298

Query: 293 VE 294
           +E
Sbjct: 299 IE 300


>gi|157825461|ref|YP_001493181.1| D-alanine--D-alanine ligase [Rickettsia akari str. Hartford]
 gi|190359211|sp|A8GMP8|DDL_RICAH RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|157799419|gb|ABV74673.1| D-alanine--D-alanine ligase [Rickettsia akari str. Hartford]
          Length = 320

 Score =  220 bits (560), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 111/297 (37%), Positives = 184/297 (61%), Gaps = 3/297 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +A++ GG+S+EREVSL S +    AL   G+KV+ ID+   + + L  +KPD+ FN LHG
Sbjct: 24  IALVAGGMSAEREVSLVSSEGVQQALIALGYKVTFIDMGADIAVKLQEIKPDIVFNCLHG 83

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG +  +L ++ IPYTHSG+L+SAL+ +K+ S     +  +    SI+V++    +
Sbjct: 84  TYGEDGCLPGLLNIMRIPYTHSGVLSSALAFNKIHSSSWFFANSINTAESIVVSKSYNIN 143

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  PYVIKPL  GSS+G+ VI ++            + +GDQ++IE+Y+ G E    
Sbjct: 144 TDPMKRPYVIKPLTQGSSIGVEVIFEEDDFN---FADYDFPYGDQVVIERYIKGREFQVA 200

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V+   +L   EI + K+ FY YE KY+   + H+ PA +  ++Y+++   +   ++ + C
Sbjct: 201 VLNSKALGALEIKLIKNRFYDYETKYTEGFAEHLCPAPLHANLYEKLLIESEKIYKTMNC 260

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           +G +R++F+ +  + K++ LEIN  PGMTP+SI PE+AAYAG +F  L+  +++ AS
Sbjct: 261 KGPARAEFILEEQTNKLYALEINTHPGMTPLSIVPEIAAYAGINFTNLIAEIIKTAS 317


>gi|190570829|ref|YP_001975187.1| D-alanine--D-alanine ligase [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|229486023|sp|B3CPK8|DDL_WOLPP RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|190357101|emb|CAQ54511.1| D-alanine--D-alanine ligase [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
          Length = 317

 Score =  218 bits (554), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 117/298 (39%), Positives = 183/298 (61%), Gaps = 5/298 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +A+L GG S ERE+SL SGKA   AL+   +   +IDVD ++   L    P LAF  LHG
Sbjct: 7   IAILSGGFSCEREISLMSGKAVKKALDSLSYNAIEIDVDSNIAQKLKKTNPALAFIALHG 66

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG +Q +LE+L I YTHS ++ASA++M+K+ SK +  S  +      +++R  +  
Sbjct: 67  PYGEDGCIQGLLEILGIKYTHSEVMASAVAMNKVMSKHIFHSLNIDTPRGYVISREDVLK 126

Query: 121 QHL-ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
            ++ +  PYV+KP+  GSS+G+ +I   +   L+L  +SS    ++++IE+Y+ GIEL  
Sbjct: 127 NNIKVDYPYVLKPINEGSSIGVHMIFSHEDY-LELKNNSSTI-MEKMIIEEYIPGIELHT 184

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
            V+ + ++   EI  PK+ FY YE KY+   + H+ PA+IP +IY+     A   HQ +G
Sbjct: 185 AVLLNEAIGTMEIR-PKNKFYDYEAKYTDGFAEHIFPAEIPNNIYRITLEHALKVHQFLG 243

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYA-GYSFRELLLWMVEDA 296
           C+ +SRSDF ++P +  +  LE+N  PG T +S+ PE+A    G  F EL+  +VED+
Sbjct: 244 CKTVSRSDFRYNPQNNTLKMLEVNTHPGFTELSLVPEIAKLTRGIDFNELVKIIVEDS 301


>gi|213019645|ref|ZP_03335450.1| D-alanine--D-alanine ligase [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
 gi|212994686|gb|EEB55329.1| D-alanine--D-alanine ligase [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
          Length = 315

 Score =  218 bits (554), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 117/298 (39%), Positives = 183/298 (61%), Gaps = 5/298 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +A+L GG S ERE+SL SGKA   AL+   +   +IDVD ++   L    P LAF  LHG
Sbjct: 5   IAILSGGFSCEREISLMSGKAVKKALDSLSYNAIEIDVDSNIAQKLKKTNPALAFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG +Q +LE+L I YTHS ++ASA++M+K+ SK +  S  +      +++R  +  
Sbjct: 65  PYGEDGCIQGLLEILGIKYTHSEVMASAVAMNKVMSKHIFHSLNIDTPRGYVISREDVLK 124

Query: 121 QHL-ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
            ++ +  PYV+KP+  GSS+G+ +I   +   L+L  +SS    ++++IE+Y+ GIEL  
Sbjct: 125 NNIKVDYPYVLKPINEGSSIGVHMIFSHEDY-LELKNNSSTI-MEKMIIEEYIPGIELHT 182

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
            V+ + ++   EI  PK+ FY YE KY+   + H+ PA+IP +IY+     A   HQ +G
Sbjct: 183 AVLLNEAIGTMEIR-PKNKFYDYEAKYTDGFAEHIFPAEIPNNIYRITLEHALKVHQFLG 241

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYA-GYSFRELLLWMVEDA 296
           C+ +SRSDF ++P +  +  LE+N  PG T +S+ PE+A    G  F EL+  +VED+
Sbjct: 242 CKTVSRSDFRYNPQNNTLKMLEVNTHPGFTELSLVPEIAKLTRGIDFNELVKIIVEDS 299


>gi|118581686|ref|YP_902936.1| D-alanine--D-alanine ligase [Pelobacter propionicus DSM 2379]
 gi|190359200|sp|A1AU58|DDL_PELPD RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|118504396|gb|ABL00879.1| D-alanine--D-alanine ligase [Pelobacter propionicus DSM 2379]
          Length = 310

 Score =  218 bits (554), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 123/296 (41%), Positives = 180/296 (60%), Gaps = 7/296 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG+S+EREVSL+SG A   AL   GF    +DV R + LVL+      AF  LHG
Sbjct: 9   IAVLMGGLSAEREVSLASGAAVCQALVARGFDALSVDVARDLPLVLSREGIGAAFIALHG 68

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG VQ +LEL+ IPYT SG+LASAL+M K+ SKQ   S G+   P     R    S
Sbjct: 69  RYGEDGCVQGLLELMAIPYTGSGVLASALAMHKLYSKQAFVSAGILTAPFHHFRRGERVS 128

Query: 121 -QHL-ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
             HL    P V+KP++ GSS+GI ++K++  +   +    ++ H D++L+EQ++ G E+ 
Sbjct: 129 LSHLSFGLPLVVKPVQEGSSVGISIVKEESQLAAAV--KLAFRHDDEILVEQFIKGQEVQ 186

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
            G++ D  +   EI V +++FY +E KY+   + H  PA++   +Y+E  R+   AH A+
Sbjct: 187 VGILDDRPMGAIEI-VSRNEFYDFEAKYTDGMAEHFFPARLEKGLYEEALRVGLAAHHAL 245

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY-AGYSFRELLLWMV 293
           GCR  SR D L  P + + + LE+N  PGMT +S+ PE+AA  A   F EL+  ++
Sbjct: 246 GCRCYSRVDLLVTP-AGECYVLEVNTLPGMTALSLLPEIAAKGADLPFEELVERII 300


>gi|78221636|ref|YP_383383.1| D-alanine--D-alanine ligase [Geobacter metallireducens GS-15]
 gi|78192891|gb|ABB30658.1| D-alanine--D-alanine ligase / cell division protein FtsQ [Geobacter
           metallireducens GS-15]
          Length = 627

 Score =  217 bits (553), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 125/300 (41%), Positives = 188/300 (62%), Gaps = 7/300 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VLMGG+S+ERE+SLSSG A   AL   G+    IDVDR +  VL     D+AF  LHG
Sbjct: 11  IGVLMGGLSAEREISLSSGGAVHKALLARGYDAVAIDVDRDLPQVLVREWIDVAFICLHG 70

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-SILVNRFTMD 119
            +GEDG VQ +LEL+ IPYT SG+LASAL+M+K+ +KQ  ++ G+ + P  +LV   T D
Sbjct: 71  RYGEDGAVQGVLELMGIPYTGSGVLASALAMNKIFAKQAFAAAGLTITPHRVLVRGETFD 130

Query: 120 SQHL-ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           +    I  P V+KP + GSS+G+ ++KK +   L     +++ + +++L+E++V G E+ 
Sbjct: 131 AVAAGIDLPVVVKPSQEGSSVGVSIVKKAEE--LAAALEAAFRYDNEILVEKFVKGREIQ 188

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
            G++ D ++   EI VPK +FY +E KY+   + H+ P  +P D+Y+++      AH+A+
Sbjct: 189 VGILDDRAMGAIEI-VPKKEFYDFEAKYTDGMAEHICPPVLPADLYRKLLAEGEKAHRAL 247

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY-AGYSFRELLLWMVEDAS 297
           GC G SR DFL        F LE+N  PGMT +S+ PE+A   AG +F EL+  ++  AS
Sbjct: 248 GCAGYSRVDFLVTE-GGDCFLLEVNTLPGMTALSLLPEIAQKEAGIAFEELVERILVSAS 306


>gi|91762848|ref|ZP_01264813.1| D-alanine--D-alanine ligase B [Candidatus Pelagibacter ubique
           HTCC1002]
 gi|91718650|gb|EAS85300.1| D-alanine--D-alanine ligase B [Candidatus Pelagibacter ubique
           HTCC1002]
          Length = 304

 Score =  216 bits (551), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 121/305 (39%), Positives = 183/305 (60%), Gaps = 14/305 (4%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62
           +L GGIS ER +SL +GK  A  L   G+KV   + D+++   +   KPD+ FN LHG F
Sbjct: 7   ILSGGISKERLISLDTGKQVAKELIKNGYKVLISEPDKNLSKNITSFKPDVIFNALHGQF 66

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDS 120
           GEDG +QAILE  +IPYTHSG++AS+++MDK  SK++     +     I  N  +  ++ 
Sbjct: 67  GEDGYIQAILETKKIPYTHSGVIASSIAMDKEISKKIFIKNKILTPRYIKFNHKKNKLNI 126

Query: 121 QHLISP----PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
             LI      P V+KP+  GSS+ + +  K   I  +L    S+N   ++LIE+++ G E
Sbjct: 127 IKLIEKILKFPVVVKPINEGSSVHVYICDKTNIIK-NLKALKSYN---EILIEEFIPGRE 182

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
           +   +M + SL   E+  PK  FY YE KY SS  + H++P  +  +   ++  +A  AH
Sbjct: 183 IQVAIMNNKSLGAIELE-PKRKFYDYEAKYNSSAKTKHLIPVDLSKNNQAKITGIARAAH 241

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           + IGC+G++RSDF F   + K + LEIN QPGMT +S+ PE+A + G SF +L+ W+++D
Sbjct: 242 KIIGCKGVTRSDFKF--FNGKFYLLEINTQPGMTKLSLVPEIAKHKGISFIKLIEWILKD 299

Query: 296 ASCLR 300
           AS  R
Sbjct: 300 ASINR 304


>gi|254455880|ref|ZP_05069309.1| D-alanine--D-alanine ligase B [Candidatus Pelagibacter sp.
           HTCC7211]
 gi|207082882|gb|EDZ60308.1| D-alanine--D-alanine ligase B [Candidatus Pelagibacter sp.
           HTCC7211]
          Length = 304

 Score =  216 bits (550), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 119/309 (38%), Positives = 182/309 (58%), Gaps = 22/309 (7%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62
           +L GGIS ER +SL +G   A  L+  G+++   + D+S+   +   KP + FN LHG F
Sbjct: 7   ILSGGISKERLISLDTGFQVAKELKKHGYEIRISEPDKSLEKKIKEFKPSVIFNALHGQF 66

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI----------L 112
           GEDG +Q ILE  +IPYTHSG++AS+++MDK  SK++     +     I          L
Sbjct: 67  GEDGYIQTILEQFKIPYTHSGVIASSIAMDKEISKKIFKKNKIITPKHIKYSFDKINLEL 126

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
           VN+   +    +  P V+KP+  GSS+ + +  K ++I   L +  S+    Q++IE+++
Sbjct: 127 VNKINKE----LKFPVVVKPINEGSSVNVFICTK-KNINQILKKMKSY---KQVMIEEFI 178

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST-HVLPAKIPLDIYKEVQRLA 231
            G E+   +MG+  L   E+  PK  FY Y+ KY++   T H++P  +  +   EV  +A
Sbjct: 179 GGREIQVAIMGNKKLGAIELK-PKRKFYDYQAKYNTNAKTQHIIPVDLDKNKLNEVLNIA 237

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             AH+ IGCRG++RSDF F     K + LEIN QPGMT +S+ PE+AAY G SF +L+ W
Sbjct: 238 LKAHKKIGCRGVTRSDFKF--YKNKFYLLEINTQPGMTKLSLVPEIAAYQGISFYKLINW 295

Query: 292 MVEDASCLR 300
           +++DAS  R
Sbjct: 296 ILKDASTKR 304


>gi|58584827|ref|YP_198400.1| D-alanine-D-alanine ligase [Wolbachia endosymbiont strain TRS of
           Brugia malayi]
 gi|81311624|sp|Q5GS66|DDL_WOLTR RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|58419143|gb|AAW71158.1| D-alanine-D-alanine ligase [Wolbachia endosymbiont strain TRS of
           Brugia malayi]
          Length = 339

 Score =  216 bits (550), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 117/312 (37%), Positives = 180/312 (57%), Gaps = 17/312 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + +L GG S ER++SL SGKA   AL+   +   +IDV+ +    L  + PDLAF  LHG
Sbjct: 19  ITILSGGFSRERKISLMSGKAVKKALDSLSYNAIEIDVNSNTAEKLKKINPDLAFIALHG 78

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG +Q +LE+L I YTHSG++ASA++M+K  SK +  S G+      +++R  +  
Sbjct: 79  PYGEDGCIQGLLEILGIKYTHSGVMASAIAMNKAMSKHIFRSLGIDTPKGYIISRGDILK 138

Query: 121 QHL-ISPPYVIKPLKGGSSLGI-IVIKKDQSIPLDLL-------------QSSSWNHGDQ 165
            ++ I  PYV+KP+  GSS+G+ I    +  + L  +             +   W   D 
Sbjct: 139 NNIKIDYPYVLKPINEGSSIGVHITFSHEDYLKLKNMFSVIPVHDAGIEEEEPVWITRDL 198

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
           ++IE+Y+ GIEL   V+ D +    EI  PK+ FY Y+ KY++  + H+ PA+IP +IY+
Sbjct: 199 MIIEEYIPGIELHTAVLLDEAAGTMEIR-PKNKFYDYKAKYTNGFAEHIFPAEIPDNIYE 257

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYA-GYS 284
                A   H+ +GC+ ISRSDF ++P    +  LEIN  PG T +S+ PE+A    G  
Sbjct: 258 MTLEHALKVHRFLGCKTISRSDFRYNPKDNTLKMLEINTHPGFTELSLVPEIAKLTKGID 317

Query: 285 FRELLLWMVEDA 296
           F EL+  ++ED+
Sbjct: 318 FNELVKIIIEDS 329


>gi|327475199|gb|AEA77194.1| D-alanyl-alanine synthetase A [Exiguobacterium sp. EPVM]
          Length = 305

 Score =  216 bits (549), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 130/304 (42%), Positives = 186/304 (61%), Gaps = 16/304 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GGIS EREVSL+SGK    ALE+ G +V  ID        L  L+ D+  + LHG
Sbjct: 3   VAVLYGGISGEREVSLTSGKGMIEALEERGHEVVAIDFHPDRADELLTLQADVVLSALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG VQ++LE+  +PYT SG+LASAL+MDK R+K + ++ G+ +   +L+       
Sbjct: 63  KYGEDGRVQSLLEMAGLPYTGSGVLASALAMDKARAKIIFAAAGIRIARDVLIETGDDID 122

Query: 121 QHLI----SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
             ++      P V+KP + GSS G + I  D+++  + +   ++     +L+EQY+ G E
Sbjct: 123 AKVVEWGSEFPCVVKPAQEGSSNG-LTIAMDEAMLREGID-KAFACDTAVLVEQYIKGRE 180

Query: 177 LTCGVMG----DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
           LT  V+G    +A+L V EI +PK++FY YE KYS   S HV PA++P  + +EVQ  A 
Sbjct: 181 LTVPVLGNHGAEAALPVIEI-IPKNEFYDYESKYSEGGSIHVCPAELPEALTEEVQTAAI 239

Query: 233 LAHQAIGCRGISRSDFLF--DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
            AH+A+GC G SRSDFL   D L+   + LE N  PGMTP+S+FP+ A   G S+ ELL 
Sbjct: 240 KAHRALGCSGYSRSDFLISEDGLA---YILETNTLPGMTPLSLFPDSARAVGISYGELLE 296

Query: 291 WMVE 294
             +E
Sbjct: 297 RFIE 300


>gi|169831401|ref|YP_001717383.1| D-alanine--D-alanine ligase [Candidatus Desulforudis audaxviator
           MP104C]
 gi|229485966|sp|B1I3W6|DDL_DESAP RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|169638245|gb|ACA59751.1| D-alanine--D-alanine ligase [Candidatus Desulforudis audaxviator
           MP104C]
          Length = 306

 Score =  215 bits (548), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 119/300 (39%), Positives = 186/300 (62%), Gaps = 11/300 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VLMGG+S+EREVSL SG+A  +ALE  G++V  IDV+R V   +     +LAF  LHG
Sbjct: 5   IGVLMGGLSAEREVSLRSGRAVCAALESRGYEVVPIDVNRDVARTVRETGIELAFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG VQ +LE+L IPYT SG+LASAL+MDK+ +K++++  G+PV     +     DS
Sbjct: 65  PLGEDGAVQGLLEVLGIPYTGSGVLASALAMDKIATKKILAHAGLPVPEYRELEAGDADS 124

Query: 121 QHLISP----PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
              +      P V+K    GSS+G+ ++++++ +   +  + ++  G ++L+E+++ G E
Sbjct: 125 ARAVVAELGLPVVVKAPTQGSSIGVYIVEREEDLEARITDAVAYG-GTRVLVEKFIAGPE 183

Query: 177 LTCGVMGDAS---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           LT  V+G+     L + EI V  +  Y YE KY+   S H++P ++P ++ + V  LA  
Sbjct: 184 LTAAVLGNREPRVLPLIEI-VSATGKYDYESKYTPGLSDHLIPPRVPREVQERVSDLALR 242

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           A++A+GCRG +R D +      + F LEIN  PG+T VS+FP+ A  AG SF +L+  +V
Sbjct: 243 AYRALGCRGFARVDLIVS--GNEAFILEINTIPGLTDVSLFPDAARAAGMSFPDLVEHLV 300


>gi|71082730|ref|YP_265449.1| D-alanine--D-alanine ligase B [Candidatus Pelagibacter ubique
           HTCC1062]
 gi|123647529|sp|Q4FPK8|DDL_PELUB RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|71061843|gb|AAZ20846.1| D-alanine--D-alanine ligase B [Candidatus Pelagibacter ubique
           HTCC1062]
          Length = 304

 Score =  215 bits (547), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 120/305 (39%), Positives = 184/305 (60%), Gaps = 14/305 (4%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62
           +L GGIS ER +SL +GK  A  L   G+KV   + D+++   +   KPD+ FN LHG F
Sbjct: 7   ILSGGISKERLISLDTGKQVAKELIKNGYKVLISEPDKNLSKNITSFKPDVIFNALHGQF 66

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDS 120
           GEDG +QAILE  +IPYTHSG++AS+++MDK  SK++     +     I  N  +  ++ 
Sbjct: 67  GEDGYIQAILETKKIPYTHSGVIASSIAMDKEISKKIFIKNKILTPKYIKFNHKKNKLNI 126

Query: 121 QHLISP----PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
             LI      P V+KP+  GSS+ + +  K  +I  +L    S+N   ++LIE+++ G E
Sbjct: 127 IKLIEKNLKFPVVVKPINEGSSVHVYICDK-TNILKNLKVLKSYN---EILIEEFIPGRE 182

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
           +   +M + SL   E+  P+  FY YE KY SS  + H++P  +  +   ++  +A  AH
Sbjct: 183 IQVAIMNNKSLGAIELE-PRRKFYDYEAKYNSSAKTKHLIPVDLSKNNLAKITGIARAAH 241

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           + IGC+G++RSDF F   + K + LEIN QPGMT +S+ PE+A + G SF +L+ W+++D
Sbjct: 242 KIIGCKGVTRSDFKF--FNGKFYLLEINTQPGMTKLSLVPEIAKHKGISFIKLIEWILKD 299

Query: 296 ASCLR 300
           AS  R
Sbjct: 300 ASINR 304


>gi|77919793|ref|YP_357608.1| D-alanine--D-alanine ligase [Pelobacter carbinolicus DSM 2380]
 gi|123573744|sp|Q3A2G9|DDL_PELCD RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|77545876|gb|ABA89438.1| D-alanine--D-alanine ligase [Pelobacter carbinolicus DSM 2380]
          Length = 305

 Score =  214 bits (545), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 117/297 (39%), Positives = 178/297 (59%), Gaps = 5/297 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG+S+EREVSL +GKA + AL   G++V+ ID  R +   L     ++AF  LHG
Sbjct: 11  IAVLMGGLSAEREVSLRTGKAISQALTRCGYEVTDIDAGRDLAQQLEKTGVEVAFIALHG 70

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG VQ +LEL +IPYT SG+LAS+L+MDK+ +K+++   G+      ++ R     
Sbjct: 71  RFGEDGTVQGLLELADIPYTGSGVLASSLAMDKVATKKMLCYHGIATPGFAVMRRGQKIC 130

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
             L   P V+KP + GS++GI ++  +Q +   L    ++ H D +L+EQ++ G E+T G
Sbjct: 131 GTLPDYPLVVKPAREGSTIGISIVHDEQELAAGL--EEAFRHDDLVLVEQFIAGAEVTVG 188

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V+    L + ++ VPK  FY Y+ KY+   + ++LPA +P  +Y  +Q  A    +AIGC
Sbjct: 189 VLDGQPLPIIQV-VPKGGFYDYQSKYTPGQTEYLLPAPLPETLYGALQDSAVRVFEAIGC 247

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
            G +R DF+        + LE+N  PGMT  S+ P+ A   G SF EL+  ++  AS
Sbjct: 248 CGAARVDFMVT--DTGFYCLEVNTIPGMTETSLLPKAANAVGMSFDELVERILAGAS 302


>gi|298507094|gb|ADI85817.1| D-alanine--D-alanine ligase [Geobacter sulfurreducens KN400]
          Length = 316

 Score =  213 bits (541), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 115/297 (38%), Positives = 184/297 (61%), Gaps = 17/297 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VLMGG+S+EREVSL+SG A  +AL+  G+    +DV R +  VL     D+AF  LHG
Sbjct: 11  IGVLMGGLSAEREVSLASGGAVLNALQSRGYDAVPVDVGRDLPQVLVREWIDVAFICLHG 70

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG VQ +LEL+ IPYT SG+LASAL+M+K+ +K+V ++ G+ V P  +V R     
Sbjct: 71  RYGEDGTVQGLLELMGIPYTGSGVLASALAMNKIVAKEVFAARGLTVAPYRVVRR----- 125

Query: 121 QHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
              + P       P V+KP + GSS+G+ ++K  + +P  L   +++ + D +L+E+++ 
Sbjct: 126 GEAVDPVAEGFGYPVVVKPSQEGSSVGVSIVKSPEELPYAL--ETAFRYDDDILVERFIK 183

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           G E+  G++ D ++   EI VP ++FY +E KY++  + H+ P  +P ++Y+ +      
Sbjct: 184 GREIQIGILDDRAMGAIEI-VPVNEFYDFEAKYTAGKAEHICPPVLPAELYRRLLAEGET 242

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA-AYAGYSFRELL 289
           AH+A+GC G SR DFL      + + LE+N  PGMT +S+ PE+A   +G  F +L+
Sbjct: 243 AHRALGCSGYSRVDFLVTE-GGECYLLEVNTLPGMTALSLLPEIALKESGIGFEDLV 298


>gi|262276883|ref|ZP_06054676.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB)
           (D-Ala-D-Ala ligase B) [alpha proteobacterium HIMB114]
 gi|262223986|gb|EEY74445.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB)
           (D-Ala-D-Ala ligase B) [alpha proteobacterium HIMB114]
          Length = 305

 Score =  210 bits (535), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 115/299 (38%), Positives = 186/299 (62%), Gaps = 3/299 (1%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62
           +LMGG S ER VS+ SGKAC  A++  G++V + D  +++   +  + PD+ FN LHG +
Sbjct: 9   ILMGGRSKERSVSIDSGKACYQAIKKIGYEVYKYDPIKNIKNNIKKINPDIVFNCLHGKY 68

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
           GEDG +Q ILE L+IPYTHSG+ AS ++MDK++SK++     +      ++ + +     
Sbjct: 69  GEDGKIQKILEKLKIPYTHSGVKASEVAMDKIKSKKIFFKKKIITPNFKIIKKISDIKNK 128

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
           +    +++KP+  GSSLG+ +  +  +                L+ E Y++G E+   V+
Sbjct: 129 ISKSKFILKPINEGSSLGVQIFPEYPTSKNFKKIKKLIKKYKILIQEPYIEGREIQTAVL 188

Query: 183 GDASLDVTEIAVPKSDFYSYELKYS-SLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241
           G+ ++   EI +PK +FY Y+ KYS S  + H++P KIP  +  +++R+A +AH+++ CR
Sbjct: 189 GNKAIGSVEI-IPKRNFYDYKAKYSLSAKTKHIIPPKIPKRLDNKIKRIALIAHKSLKCR 247

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           G++RSDF   P + K++ LEIN QPGMT +S+ PE+A   G SF EL+ WM++DAS  R
Sbjct: 248 GVTRSDFRVMP-NNKIYILEINTQPGMTNLSLVPEIAQNFGLSFTELVDWMIKDASINR 305


>gi|330813738|ref|YP_004357977.1| D-alanine--D-alanine ligase [Candidatus Pelagibacter sp. IMCC9063]
 gi|327486833|gb|AEA81238.1| D-alanine--D-alanine ligase [Candidatus Pelagibacter sp. IMCC9063]
          Length = 302

 Score =  210 bits (535), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 120/301 (39%), Positives = 186/301 (61%), Gaps = 9/301 (2%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVG-LVLAHLKPDLAFNVLHGN 61
           +L+GG S ER+VSLS+G+A   AL   G++V  + VD  +G    +    DLAFN LHG 
Sbjct: 8   LLVGGPSKERKVSLSTGRAVYLALRKLGYEV--VKVDPKIGSKNFSQHNCDLAFNALHGQ 65

Query: 62  FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ 121
           FGEDG +Q++LE  +IPYTHSG+ +SA++MDK++SK+          P   V +   D  
Sbjct: 66  FGEDGTIQSLLERQKIPYTHSGVKSSAIAMDKLKSKKKFIKA-KIKTPKFKVIKKLSDLN 124

Query: 122 HLIS-PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           ++IS   +V+KP+  GSS+G+++ K   S+    ++     +G +LL E++++G E+   
Sbjct: 125 NIISKKKFVLKPINEGSSVGVVICKNLSSLNKVKIKMYLKKYG-KLLQEEFIEGKEVQAA 183

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYS-SLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
           +MG  +L   EI  P  +FY Y  KYS +  + H++PA +   IY +V ++A  AH+ + 
Sbjct: 184 IMGSKALGAIEIK-PSRNFYDYNAKYSHNAKTKHIMPANLEKKIYNKVLQIALRAHKCLS 242

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
           C+G++RSDF       +++ LE N QPGMTP+S+ PE+A Y+G +F EL+ WMV D S  
Sbjct: 243 CKGVTRSDFRVTR-DNEIYILETNTQPGMTPLSLVPEIAEYSGIAFVELIKWMVLDVSTN 301

Query: 300 R 300
           R
Sbjct: 302 R 302


>gi|78043171|ref|YP_360179.1| D-alanine--D-alanine ligase [Carboxydothermus hydrogenoformans
           Z-2901]
 gi|123576231|sp|Q3ACF5|DDL_CARHZ RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|77995286|gb|ABB14185.1| D-alanine--D-alanine ligase [Carboxydothermus hydrogenoformans
           Z-2901]
          Length = 312

 Score =  209 bits (531), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 112/301 (37%), Positives = 182/301 (60%), Gaps = 16/301 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+ GG+SSEREVSL +G A   AL   G+ V +ID+DR++   L     D AF  LHG
Sbjct: 3   IGVICGGLSSEREVSLRTGDAIFRALLKKGYNVVKIDMDRNIAETLKKENIDFAFIALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG +Q +LE+++IPYT SGILAS+L++DK+ +K+++ + G+P  P+ +   F  + 
Sbjct: 63  KYGEDGAIQGLLEIMDIPYTGSGILASSLAIDKIMTKKILKAEGIP-TPNYIAFSFDENP 121

Query: 121 Q---------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P VIK  + GS++GI  +   Q +P  + +    +   QLL+E++
Sbjct: 122 NFEAISSEILQTLKLPVVIKAPREGSTIGIEFVFSKQELPKAIKKVLEIDK--QLLVEEF 179

Query: 172 VDGIELTCGVMGDAS---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           ++G+E+T  V+G+++   L + EI V K+ FY YE KY+   S H++P +I  ++ ++  
Sbjct: 180 IEGVEVTASVLGNSNPVVLPLIEI-VSKTRFYDYEAKYTPGLSEHIIPPRIAPELSQKAI 238

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
             A   ++A+GCRG +R DF+ D    + + LE+N  PGMT  S+FP+ A   G SF +L
Sbjct: 239 EYARKTYKALGCRGFARVDFMIDVRKNEAYVLEVNTIPGMTATSLFPDAAKAQGISFEDL 298

Query: 289 L 289
           +
Sbjct: 299 V 299


>gi|206890747|ref|YP_002249129.1| D-alanine--D-alanine ligase B [Thermodesulfovibrio yellowstonii DSM
           11347]
 gi|226696392|sp|B5YFT1|DDL_THEYD RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|206742685|gb|ACI21742.1| D-alanine--D-alanine ligase B [Thermodesulfovibrio yellowstonii DSM
           11347]
          Length = 304

 Score =  208 bits (530), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 116/298 (38%), Positives = 189/298 (63%), Gaps = 8/298 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+ GGISSEREVSL SG+A  +AL++ G+ V  ID    +   +   K D+AF VLHG
Sbjct: 3   VGVIAGGISSEREVSLRSGQAVFNALKELGYDVVFIDAGIDLCEKIKIEKIDIAFLVLHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR----F 116
            +GE+G VQ +LE++ IPYT SG+LASAL+MDK  SK++    G+PV P  ++N+     
Sbjct: 63  GWGENGAVQGMLEVMGIPYTGSGVLASALAMDKEASKKIFLYHGIPVPPFKVLNKKDYIS 122

Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
           +  S    S P V+KP + GSS+G+ ++K ++     +  + ++  G +++IE++++G E
Sbjct: 123 SAVSLSSFSFPCVVKPAEEGSSIGVNIVKNEREFKNAI--NEAFQFGKRVIIEKFIEGRE 180

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +  GV+GD +L   E+  PK  FYSYE KY+   + ++LP +I   +Y++++ L   AH+
Sbjct: 181 IHIGVLGDKALGGVEVR-PKKGFYSYEAKYTKGLTEYILPPEIDNALYEKLKELGLKAHK 239

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           ++ C+G +R D + D      + LE+N  PGMT  S+ P++A+ AGY F+ L+  ++E
Sbjct: 240 SLNCKGGTRVDMIVDQQGNP-YVLEVNTIPGMTETSLLPKIASLAGYDFKGLVKEILE 296


>gi|39998157|ref|NP_954108.1| D-alanine--D-alanine ligase [Geobacter sulfurreducens PCA]
 gi|81701145|sp|Q748D8|DDL_GEOSL RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|39985103|gb|AAR36458.1| D-alanine--D-alanine ligase [Geobacter sulfurreducens PCA]
          Length = 316

 Score =  208 bits (530), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 114/292 (39%), Positives = 183/292 (62%), Gaps = 7/292 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VLMGG+S+EREVSL+SG A   AL+  G+    +DV R +  VL     D+AF  LHG
Sbjct: 11  IGVLMGGLSAEREVSLASGGAVLKALQSRGYDAVPVDVGRDLPQVLVREWIDVAFICLHG 70

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF-TMD 119
            +GEDG VQ +LEL+ IPYT SG+LASAL+M+K+ +K+V ++ G+ + P  +V R  T+D
Sbjct: 71  RYGEDGTVQGLLELMGIPYTGSGVLASALAMNKIVAKEVFAARGLTIAPYRVVRRGETVD 130

Query: 120 S-QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                   P V+KP + GSS+G+ ++K  + +P  L    ++ + D +L+E+++ G E+ 
Sbjct: 131 PVAEGFGYPVVVKPSQEGSSVGVSIVKSPEELPSAL--ELAFRYDDDILVERFIKGREIQ 188

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
            G++ D ++   EI VP ++FY +E KY++  + H+ P  +P ++++ +      AH+A+
Sbjct: 189 IGILDDRAMGAIEI-VPVNEFYDFEAKYTAGKAEHICPPVLPAELHRRLLAEGEAAHRAL 247

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA-AYAGYSFRELL 289
           GC G SR DFL      + + LE+N  PGMT +S+ PE+A   +G  F +L+
Sbjct: 248 GCSGYSRVDFLVTE-GGECYLLEVNTLPGMTALSLLPEIALKESGIGFEDLV 298


>gi|297617349|ref|YP_003702508.1| D-alanine/D-alanine ligase [Syntrophothermus lipocalidus DSM 12680]
 gi|297145186|gb|ADI01943.1| D-alanine/D-alanine ligase [Syntrophothermus lipocalidus DSM 12680]
          Length = 314

 Score =  207 bits (526), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 117/305 (38%), Positives = 183/305 (60%), Gaps = 17/305 (5%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-SVGLVLAHLKPDLAFNVLHGN 61
           VL GG S EREVSL SG+A A AL   GF+VS +D++  SV  ++A  +PD+AF  LHG 
Sbjct: 7   VLYGGKSKEREVSLRSGRAVADALSQKGFEVSVLDLNENSVASIVAD-RPDVAFIALHGK 65

Query: 62  FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ 121
           +GEDG VQ +L++LEIPY  S +L SA+ ++K  +K++++   +P  P +++N       
Sbjct: 66  YGEDGTVQGLLDILEIPYVGSDVLTSAVCINKATTKKILAYEQLPTAPFVILNTERGPKI 125

Query: 122 HL----------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
            L          +  P V+KP   GSS+G  ++KK++++   L   ++  +  +L++E++
Sbjct: 126 GLAEMADKVVKELGLPAVVKPATQGSSIGTTIVKKEEALIPAL--ETALGYDGELVVERF 183

Query: 172 VDGIELTCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           +DG E+T  V+G+   +V  +   V +++FY YE KY+   S H++PA+I       V+ 
Sbjct: 184 IDGTEVTASVLGNEDAEVLPLIEIVAENEFYDYEAKYTPGMSHHIIPARISERARVRVEE 243

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           +A   + A  CRG SR DF+ D  +   F LEIN  PGMT +S+FP+ A  AG SF +L 
Sbjct: 244 IALKTYHAFKCRGFSRVDFIVDK-NDNPFVLEINTIPGMTSLSLFPDAARAAGMSFEDLC 302

Query: 290 LWMVE 294
             +VE
Sbjct: 303 ARLVE 307


>gi|257065509|ref|YP_003145181.1| D-alanine--D-alanine ligase [Slackia heliotrinireducens DSM 20476]
 gi|256793162|gb|ACV23832.1| D-alanine--D-alanine ligase [Slackia heliotrinireducens DSM 20476]
          Length = 317

 Score =  204 bits (520), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 116/300 (38%), Positives = 178/300 (59%), Gaps = 16/300 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP-DLAFNVLH 59
           +AVL GG S EREVSL+SGKACA ALE +GF+V+ +D      L     +P D+AF  LH
Sbjct: 12  VAVLCGGKSGEREVSLNSGKACAEALEASGFEVTLLDTAEKADLKRLIDEPFDVAFLALH 71

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G  GEDG +Q  LE + IPYT SGI AS+++++K ++K   +  G+ V  S+ ++   + 
Sbjct: 72  GRGGEDGTIQGFLETVGIPYTGSGINASSVAINKSKAKDAYAQAGLRVAASMTISEDDIL 131

Query: 120 SQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
            ++LIS        P V+KP   GSSLG+ +++    I   +  + + +   + ++EQ++
Sbjct: 132 DENLISDIVETCGIPCVVKPTTEGSSLGMTIVRDAADIAEAIKTALAVDV--EAMVEQFI 189

Query: 173 DGIELTCGVMGD---ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
            G ELT GV+G+    +L V +I   + +FY+Y  KY++  S H+ PA +  D+ +  Q 
Sbjct: 190 SGTELTVGVIGNDDAEALPVIQIVPTEDEFYNYHAKYAAGGSRHLCPAPVSRDVTENAQE 249

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           +A  AH  +GCRG+SR+D + D  +    W LE N  PGMT  S+ P+ A  AG  F++L
Sbjct: 250 MAVAAHMVLGCRGVSRTDIIVD--ADDTCWVLETNTIPGMTGTSLVPDAAKVAGMDFQQL 307


>gi|52425719|ref|YP_088856.1| D-alanine--D-alanine ligase [Mannheimia succiniciproducens MBEL55E]
 gi|81386800|sp|Q65RY9|DDL_MANSM RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|52307771|gb|AAU38271.1| DdlA protein [Mannheimia succiniciproducens MBEL55E]
          Length = 307

 Score =  204 bits (518), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 114/302 (37%), Positives = 181/302 (59%), Gaps = 14/302 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SG A  +AL + G+    ID        L     + AFN+LHG
Sbjct: 9   IAVLLGGTSAEREVSLTSGDAVLTALRNQGYDAHPIDPKEYPVAQLKEQGFERAFNILHG 68

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG++Q +LE + +PYT  G++ SAL+MDKMR+K +    G+P+    +V R T+D 
Sbjct: 69  RGGEDGVIQGVLEQIGLPYTGCGVMTSALTMDKMRTKMLWKGFGLPIADMEIVTRDTVDE 128

Query: 121 QH------LISPPYVIKPLKGGSSLGIIVIKKDQSIP--LDLLQSSSWNHGDQLLIEQYV 172
            +       +  P ++KP + GSS+G+  +   + +   +DL    +  H D +LIE+++
Sbjct: 129 LNPLEVVERLGLPLMVKPSREGSSVGLTKVNAVEELKNAVDL----ALTHDDTVLIEEWL 184

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            GIE+T  V+ D  L   +I +P+ +FY Y+ KY S N+ ++ PA +  +  +E+Q+L  
Sbjct: 185 SGIEMTVPVLDDQVLPAVQI-IPEGEFYDYDAKYISDNTRYICPAPMSEESLQELQKLVK 243

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
            A+  +GCRG SR D + D  +     +E+N  PGMT  S+FP+ AA  GYSF +L++ +
Sbjct: 244 RAYDVVGCRGWSRIDVMTDA-NGNFRLVEVNTTPGMTSHSLFPKSAATVGYSFEQLVVKI 302

Query: 293 VE 294
           +E
Sbjct: 303 LE 304


>gi|229816214|ref|ZP_04446524.1| hypothetical protein COLINT_03264 [Collinsella intestinalis DSM
           13280]
 gi|229808222|gb|EEP44014.1| hypothetical protein COLINT_03264 [Collinsella intestinalis DSM
           13280]
          Length = 325

 Score =  203 bits (517), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 124/306 (40%), Positives = 180/306 (58%), Gaps = 17/306 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP---DLAFNV 57
           +AVL GGIS ERE+SL+SGK  A+AL +AG+   ++ VD      L+ L+    D+AF  
Sbjct: 17  VAVLAGGISDEREISLASGKNAAAALTEAGYGTVEM-VDPGERGFLSRLENGNYDVAFIA 75

Query: 58  LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117
           LHG  GEDG+ Q ILE L IPYT S  LAS ++MDK  SK +    G+PV PS+   R  
Sbjct: 76  LHGFGGEDGMTQHILEFLGIPYTGSNSLASGIAMDKDLSKLLYRRAGLPVAPSVTFTRAD 135

Query: 118 MDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
           M S      ++ P   +KP+  GSS GI ++K    +   +    ++ HGD++++E  V 
Sbjct: 136 MPSIDEIVEIVGPQSFVKPVVNGSSYGISLVKDPSELTAAI--ELAFEHGDKVMVEHRVF 193

Query: 174 GIELTCGVMGDA----SLDVTEIAVP-KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           G+E +   +GD     +L V EI +P +S+FY  E+KY+  N  H +PA++P D+Y +VQ
Sbjct: 194 GVECSVAALGDGETLRALPVVEIMMPQQSEFYDLEVKYADPNDIHRIPAQLPEDVYAQVQ 253

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
            +A  AH+A+G  GISR+D +          LE N  PGMT  S+ P+ A +AG +F +L
Sbjct: 254 DIACRAHEALGLFGISRTDVIV--TEDGPIILETNNIPGMTSESLVPDEARHAGIAFSDL 311

Query: 289 LLWMVE 294
              +VE
Sbjct: 312 CAELVE 317


>gi|172057823|ref|YP_001814283.1| D-alanine--D-alanine ligase [Exiguobacterium sibiricum 255-15]
 gi|171990344|gb|ACB61266.1| D-alanine--D-alanine ligase [Exiguobacterium sibiricum 255-15]
          Length = 315

 Score =  203 bits (516), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 123/302 (40%), Positives = 173/302 (57%), Gaps = 12/302 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GGIS EREVSL+SGK+  +ALE  G +V  +D        + +L+ + A   LHG
Sbjct: 3   VAVLFGGISGEREVSLNSGKSVINALESKGHEVVAVDFHPERAEEILNLQVEAAVIALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG VQA+LE+  IPYT SG+LASAL+MDK RSK      G+ +   +LV R     
Sbjct: 63  KYGEDGRVQALLEMAGIPYTGSGVLASALAMDKARSKVHFEKAGIRIARDVLVERGDDIE 122

Query: 121 QHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
           Q +       P V+KP + GSS G+ +   +Q +   +    ++   D +LIEQ++ G E
Sbjct: 123 QKIKQWDAQFPCVVKPAQEGSSNGLTIAMDEQMLRQGI--ELAFQADDAVLIEQFIKGRE 180

Query: 177 LTCGVMG----DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
           +T  V+G    + +L V EI +PK++FY YE KY+   S H+ PA+      + +Q  A 
Sbjct: 181 VTVPVLGAKGQEKALPVIEI-IPKNEFYDYESKYAIGGSEHICPAQFDEKTTQTLQEWAV 239

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           LAHQ +GC G SR+DFL  P       LE N  PGMT  S+FP+ A   G  + EL+   
Sbjct: 240 LAHQVLGCAGYSRTDFLV-PDEGAPVILETNTLPGMTSTSLFPDGARAVGIDYPELVETF 298

Query: 293 VE 294
           +E
Sbjct: 299 IE 300


>gi|189485639|ref|YP_001956580.1| D-alanine-D-alanine ligase [uncultured Termite group 1 bacterium
           phylotype Rs-D17]
 gi|170287598|dbj|BAG14119.1| D-alanine-D-alanine ligase [uncultured Termite group 1 bacterium
           phylotype Rs-D17]
          Length = 306

 Score =  202 bits (514), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 113/296 (38%), Positives = 170/296 (57%), Gaps = 5/296 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VL GG+SSERE+S+ SGKA  +  +     V  IDV+RS+   +   K D+A+  LHG
Sbjct: 15  IGVLYGGLSSEREISIKSGKAVLNVFKKLKLNVCGIDVNRSIAEEIKKEKIDVAYIALHG 74

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LE+L IPYT SGI ASA S+DK  SK++     +      ++ +F    
Sbjct: 75  PMGEDGTIQGMLEILGIPYTGSGIFASAASIDKDVSKKIFKYADILTPEWKMLKKFGTVP 134

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           + +   P V+KP+  GS++G+ ++K+       + +   + +GD+ LIEQ+++G E+T G
Sbjct: 135 E-IKKYPVVVKPVSQGSTIGVAIVKRPSEFAAAVKE--VFKYGDEALIEQFIEGKEVTVG 191

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V+   +L V EI VPK  FY ++ KY    S H++PA I  + Y+ VQ  A   ++   C
Sbjct: 192 VLNGKALPVVEI-VPKGKFYDFKAKYQKGGSQHIIPAGISEEAYETVQNYAEKVYEIFKC 250

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           R I R D + D   R V+  E N  PGMT  S+ P+ +   GYSF  L+L + E A
Sbjct: 251 RAICRVDMIVDRKDR-VWVFENNTIPGMTETSLVPDESRAVGYSFESLVLKITESA 305


>gi|317489232|ref|ZP_07947749.1| D-alanine-D-alanine ligase [Eggerthella sp. 1_3_56FAA]
 gi|325832243|ref|ZP_08165242.1| D-ala D-ala ligase N-terminal domain protein [Eggerthella sp. HGA1]
 gi|316911633|gb|EFV33225.1| D-alanine-D-alanine ligase [Eggerthella sp. 1_3_56FAA]
 gi|325486079|gb|EGC88533.1| D-ala D-ala ligase N-terminal domain protein [Eggerthella sp. HGA1]
          Length = 313

 Score =  202 bits (514), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 118/300 (39%), Positives = 179/300 (59%), Gaps = 10/300 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-VDRSVGLVLAHLKPDLAFNVLH 59
           +A+L GG S EREVSL+S +    ALE+AG+ V+Q+D  D+     L     D+AF  LH
Sbjct: 12  VALLAGGKSGEREVSLASAEGAREALEEAGYTVTQLDPADKEDLKRLIDGPFDVAFLCLH 71

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---F 116
           G +GEDG VQ +LE + +PY  SG+ +SAL+MDK++SK      G+P  PS+ + +   +
Sbjct: 72  GKYGEDGTVQGLLETIGLPYIGSGVWSSALAMDKVKSKLYYEQAGIPTPPSVPLQKGDSY 131

Query: 117 TMDS-QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175
            +DS    +    V+KP   GS+LG+ +++   +I   +    +++   ++L+E+Y+ G 
Sbjct: 132 DVDSIVEKLGTHCVVKPGTEGSALGVFIVEGAAAIGEAI--EKAFDIDSEVLVERYIKGK 189

Query: 176 ELTCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           ELT  V+GDA ++   I   VPKSDFY +E KY+   S H+ PA +  +  + VQ LA  
Sbjct: 190 ELTVAVIGDAEVEALPIIEIVPKSDFYDFESKYAPGGSQHLCPAPLSDETTRMVQELAVR 249

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           AH+A+ C G+SRSDF+ +      + LE N  PGMT  S+ P+ A  AG SF EL   ++
Sbjct: 250 AHRALSCEGVSRSDFILEE-DGSCWTLETNTIPGMTGTSLLPDAARAAGISFPELCTRLI 308


>gi|310823485|ref|YP_003955843.1| d-alanine--d-alanine ligase [Stigmatella aurantiaca DW4/3-1]
 gi|309396557|gb|ADO74016.1| D-alanine--D-alanine ligase [Stigmatella aurantiaca DW4/3-1]
          Length = 314

 Score =  201 bits (511), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 119/302 (39%), Positives = 179/302 (59%), Gaps = 9/302 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VL+GG+SSER+VSL +G A A AL   G+ V +IDV + V   L   K D+A+  LHG
Sbjct: 14  VGVLLGGLSSERDVSLRTGAAVAKALRSLGYDVVEIDVGKDVAARLTAEKVDVAWLALHG 73

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG +Q +LE L IPYT SG+LASA+ MDK+ +K + ++ G+P  P       T   
Sbjct: 74  RYGEDGSIQGLLESLFIPYTGSGVLASAVGMDKVYAKWIFTTHGIPTPPYKTFKDATSAR 133

Query: 121 QHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
           +       S P V+KP + GSS+G+ V K  ++  L  ++ ++  +   LL+EQ++ G E
Sbjct: 134 EAADTLPFSYPVVVKPSREGSSVGVHVCKTKEAY-LAAVEDAA-RYAGTLLVEQFIPGRE 191

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST-HVLPAKIPLDIYKEVQRLAFLAH 235
           +   V+ D +L V E+ V + +FY +  KY+S + T ++ PA +P D Y+ V  +   AH
Sbjct: 192 VQGAVLDDEALGVIEVVVAR-EFYDHTAKYTSGSGTKYLFPAPLPADQYERVNAVCLAAH 250

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           +A+GC+G SRSD +       VF LE N  PGMT  S+ P++AA  G  F  L   +++ 
Sbjct: 251 RALGCQGASRSDVIITE-GGDVFVLETNTLPGMTETSLLPKIAAGRGIDFPALCERILQG 309

Query: 296 AS 297
           AS
Sbjct: 310 AS 311


>gi|295106391|emb|CBL03934.1| D-alanine--D-alanine ligase [Gordonibacter pamelaeae 7-10-1-b]
          Length = 315

 Score =  200 bits (509), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 117/303 (38%), Positives = 184/303 (60%), Gaps = 14/303 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-VDRSVGLVLAHLKPDLAFNVLH 59
           +A+L+GGIS EREVSL+SG+    AL +AGF+V+ +D  D+     L     D+AF  LH
Sbjct: 12  VALLVGGISGEREVSLASGEGAHQALTEAGFQVTTLDPADKDDLKTLIDGGFDVAFICLH 71

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN-RFTM 118
           G +GEDG +Q +LE++ +PY  SG+ +SAL+MDK++SK    + G+   PSI +    T+
Sbjct: 72  GKYGEDGTLQGMLEMIGLPYIGSGVWSSALAMDKVKSKVFYQAAGISTPPSITLGVNDTV 131

Query: 119 DSQHLI---SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175
           D + ++       V+K    GS+LG+ +++   +I   + ++   +  +++L+E+Y+ G 
Sbjct: 132 DVEEIVGSLGERCVVKSATEGSALGVFIVEGHDAIQEAIEKARELD--NEILVERYIKGK 189

Query: 176 ELTCGVMGD---ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
           ELT  V+G+    +L + EI VP +DFY YE KY    S H+ PA +  +  +++Q +A 
Sbjct: 190 ELTVAVIGNDNPRALPIIEI-VPVNDFYDYEAKYKPGASQHLCPAPLSEETTRQIQNMAV 248

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
            AH+A+ C G+SRSDF+ D      +W LE N  PGMT  S+ P+ A  AG SF EL   
Sbjct: 249 QAHKALECAGVSRSDFILD--DEGDWWILETNTIPGMTGTSLLPDAARAAGISFPELCTM 306

Query: 292 MVE 294
           ++E
Sbjct: 307 LIE 309


>gi|15614184|ref|NP_242487.1| D-alanyl-D-alanine ligase A [Bacillus halodurans C-125]
 gi|20137662|sp|Q9KCF0|DDL_BACHD RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|10174238|dbj|BAB05340.1| D-alanyl-D-alanine ligase A [Bacillus halodurans C-125]
          Length = 305

 Score =  199 bits (505), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 122/302 (40%), Positives = 175/302 (57%), Gaps = 14/302 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSLSSGK    AL+  G +V  ID        L  L  DL F  LHG
Sbjct: 3   IAVLYGGTSAEREVSLSSGKGIMEALKANGHEVIGIDFHPDQVRDLVDLDVDLVFIGLHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG VQA+L+LL IPY  +G+  SAL+MDK ++K      G+ V   ++++ FT D+
Sbjct: 63  RLGEDGKVQALLDLLNIPYVGTGVQGSALAMDKAKAKLFFEKAGIRVAEEVVLHSFTYDA 122

Query: 121 QHLI---SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ--SSSWNHGDQLLIEQYVDGI 175
                  + P V+KP + GS++G+ V + ++    +LLQ    ++ H D +LIE+++ G 
Sbjct: 123 NAFNFTGTYPVVVKPNQEGSTIGLTVAETEE----ELLQGIEEAFRHDDTILIEEFIAGT 178

Query: 176 ELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           E+T  V+G+     SL V EI VPK+  Y YE KY+   S H++PA+I  +    VQ+ A
Sbjct: 179 EVTVAVLGNKGEERSLPVVEI-VPKNKLYDYESKYAPGMSEHIVPARISEEHTAYVQQAA 237

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             AHQA+GC   SR DF+          L++N  PGMTP S++P+ A   G S+ E++  
Sbjct: 238 VRAHQALGCDVYSRVDFIVPNDGSDPVILKVNTLPGMTPTSLYPDAAKGVGMSYEEMIQT 297

Query: 292 MV 293
            V
Sbjct: 298 FV 299


>gi|153006725|ref|YP_001381050.1| D-alanine--D-alanine ligase [Anaeromyxobacter sp. Fw109-5]
 gi|190359108|sp|A7HH70|DDL_ANADF RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|152030298|gb|ABS28066.1| D-alanine--D-alanine ligase [Anaeromyxobacter sp. Fw109-5]
          Length = 308

 Score =  198 bits (504), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 121/304 (39%), Positives = 175/304 (57%), Gaps = 14/304 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG SSEREVSL +G ACA AL   G  V+ +DVD  +   L  L+ D+AF  LHG
Sbjct: 9   VAVLYGGRSSEREVSLRTGAACADALRARGHDVTLVDVDAELPARLRELRVDVAFVALHG 68

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF---- 116
            +GEDG VQ +LE + IPYT SG+ ASA+ MDK  SK +  + G+ V   I    F    
Sbjct: 69  RWGEDGCVQGLLECMGIPYTGSGVTASAMGMDKTVSKAIFKALGLDV---IEYRAFPPAR 125

Query: 117 --TMDSQHL-ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
              +D + L    P V+KP   GSS+G+ ++ KD +   D  + ++   GD +++E+YV 
Sbjct: 126 AAEIDLRDLPFGVPCVVKPAGEGSSVGVQIV-KDAARLADACREAARYKGD-VVVERYVK 183

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           G E+   V+   +L   EIA P ++FY Y  KY++  + +  PA+IP      V   A  
Sbjct: 184 GTEVNVAVLEGKALGAIEIA-PANEFYDYAAKYTAGTTRYYYPARIPEAHASRVMAAAEA 242

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           AH+ +GC G++R DF+  P     F LE+N  PGMT  S+ P++AA  G +F EL   ++
Sbjct: 243 AHRGLGCSGVTRVDFIVAP-DGTPFILEVNTLPGMTATSLVPKIAAGLGLAFPELCERIL 301

Query: 294 EDAS 297
           + A+
Sbjct: 302 DGAA 305


>gi|257792839|ref|YP_003183445.1| D-alanine/D-alanine ligase [Eggerthella lenta DSM 2243]
 gi|257476736|gb|ACV57056.1| D-alanine/D-alanine ligase [Eggerthella lenta DSM 2243]
          Length = 307

 Score =  198 bits (504), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 117/300 (39%), Positives = 178/300 (59%), Gaps = 10/300 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-VDRSVGLVLAHLKPDLAFNVLH 59
           +A+L GG S EREVSL+S +    ALE+AG+ V+Q+D  D+     L     D+AF  LH
Sbjct: 6   VALLAGGKSGEREVSLASAEGAREALEEAGYTVTQLDPADKEDLKRLIDGPFDVAFLCLH 65

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---F 116
           G +GEDG VQ +LE + +PY  SG+ +SAL+MDK++SK      G+   PS+ + +   +
Sbjct: 66  GKYGEDGTVQGLLETIGLPYIGSGVWSSALAMDKVKSKLYYEQAGILTPPSVPLQKGDSY 125

Query: 117 TMDS-QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175
            +DS    +    V+KP   GS+LG+ +++   +I   +    +++   ++L+E+Y+ G 
Sbjct: 126 DVDSIVEKLGTHCVVKPGTEGSALGVFIVEGAAAIGEAI--EKAFDIDSEVLVERYIKGK 183

Query: 176 ELTCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           ELT  V+GDA ++   I   VPKSDFY +E KY+   S H+ PA +  +  + VQ LA  
Sbjct: 184 ELTVAVIGDAEVEALPIIEIVPKSDFYDFESKYAPGGSQHLCPAPLSDETTRMVQELAVR 243

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           AH+A+ C G+SRSDF+ +      + LE N  PGMT  S+ P+ A  AG SF EL   ++
Sbjct: 244 AHRALSCEGVSRSDFILEE-DGSCWTLETNTIPGMTGTSLLPDAARAAGISFPELCTRLI 302


>gi|86609556|ref|YP_478318.1| D-alanine--D-alanine ligase B [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|123501569|sp|Q2JJV2|DDL_SYNJB RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|86558098|gb|ABD03055.1| D-alanine--D-alanine ligase B [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 325

 Score =  197 bits (501), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 120/306 (39%), Positives = 173/306 (56%), Gaps = 16/306 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP---DLAFNV 57
           + VL GG S+ER+VS  +GKAC  ALED G +V  ID D  + L L   +    D  +  
Sbjct: 3   IVVLAGGRSAERQVSWVTGKACKRALEDLGHRVKVIDPDEDLPLRLWQERQAGCDFVWIA 62

Query: 58  LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---- 113
           LHG  GEDG+VQ +L+ L +PY  SG LASAL+MDK+ SKQ+  + G+P  P   V    
Sbjct: 63  LHGPGGEDGVVQGMLDWLGLPYQGSGPLASALAMDKLVSKQIFRAAGIPT-PDWQVWDDQ 121

Query: 114 NRFTM-DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP--LDLLQSSSWNHGDQLLIEQ 170
           N  T  D    +  P VIKP   GS++GI +++ ++S    L+L +S S     ++ +E+
Sbjct: 122 NPLTWADCAAELGSPLVIKPSNNGSTVGISIVRDERSFAQGLELARSVS----SRIFLER 177

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
           YV G E+T  ++    L   EI   + DFY YE KY+   S H++P  +        +  
Sbjct: 178 YVPGKEITLSILSGQVLPAIEIIPAQGDFYDYEAKYAPGGSRHLIPCSLSPAGLARCEAA 237

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
              A+QA+GC G++R D   DP     + LE+N  PGMTP S+ P+ AA  G++F EL+ 
Sbjct: 238 GLKAYQALGCEGLARVDLRVDP-EENPWVLEVNTLPGMTPTSLCPDAAAALGWTFTELVE 296

Query: 291 WMVEDA 296
            M++DA
Sbjct: 297 RMLQDA 302


>gi|147677725|ref|YP_001211940.1| D-alanine--D-alanine ligase [Pelotomaculum thermopropionicum SI]
 gi|190359201|sp|A5D2F9|DDL_PELTS RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|146273822|dbj|BAF59571.1| D-alanine-D-alanine ligase and related ATP-grasp enzymes
           [Pelotomaculum thermopropionicum SI]
          Length = 318

 Score =  197 bits (501), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 113/307 (36%), Positives = 181/307 (58%), Gaps = 17/307 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VLMGG SSEREVSL +G+A  +AL+   +   +IDV   V   +   + DLAF  LHG
Sbjct: 5   VGVLMGGRSSEREVSLKTGEAVYNALKVKNYLAVKIDVGLDVVERIKEERIDLAFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG +Q +LE+L+IPYT SG+LASAL+MDK  +K+++   G+P  P +LV +     
Sbjct: 65  RYGEDGTIQGLLEMLDIPYTGSGVLASALAMDKAATKKIIQYEGLPTPPFMLVEKKEALK 124

Query: 121 QHL----------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           + L          +  P V+K    GS++G+  + K++ +   L    ++++    L+EQ
Sbjct: 125 ESLQACSERICREMGLPLVVKAPTQGSTIGMSFVHKEEDMAGAL--ELAYDYDPVALVEQ 182

Query: 171 YVDGIELTCGVMGD---ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227
           ++ G E+T  ++G+    +L + EI V  +  Y Y+ KY++  S H++P +IP      +
Sbjct: 183 FIRGTEVTASILGNEEPVALPLIEI-VSATGVYDYKAKYTAGMSDHIIPPRIPEKQQNAI 241

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287
           ++LA    +++GCRG++R DF+ D      F LE+N  PGMT  S+FP+ A  AG  F +
Sbjct: 242 KKLAVSTFKSLGCRGLARVDFIVDKQGNP-FILEVNTIPGMTATSLFPDAARAAGIEFPD 300

Query: 288 LLLWMVE 294
           L+  +VE
Sbjct: 301 LIEKLVE 307


>gi|260892987|ref|YP_003239084.1| D-alanine/D-alanine ligase [Ammonifex degensii KC4]
 gi|260865128|gb|ACX52234.1| D-alanine/D-alanine ligase [Ammonifex degensii KC4]
          Length = 308

 Score =  197 bits (501), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 112/298 (37%), Positives = 182/298 (61%), Gaps = 13/298 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL SG+A   AL++ G++  +IDV   + L L+ +KPD+ F  LHG
Sbjct: 3   VAVLCGGNSAEREVSLRSGEAVYRALQERGWEAVKIDVGPDIALRLSEVKPDVVFLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LE++ +PYT  GILASAL+M+K+ +K+ + S  +P    I +++     
Sbjct: 63  KGGEDGSIQGLLEVMGLPYTGPGILASALAMNKIATKRYLRSASLPTPDFITLDKEETHD 122

Query: 121 QHL-----ISP-PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
           + L       P P V+K    GSSLG+ ++++++ +   L  + ++ +   +L+E++++G
Sbjct: 123 EWLQRVKEFRPFPVVVKAPTQGSSLGMNIVRREEELLPAL--AEAFRYDPVVLVEEFIEG 180

Query: 175 IELTCGVMGDAS---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           +E+T  V+G+     L + EI   K   Y YE KY+   S H++P ++P    ++V+ LA
Sbjct: 181 VEVTAAVLGNRKPVVLPLIEIVADKG-VYDYEAKYTPGKSQHIIPPRLPEPWQEKVKELA 239

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
              ++ + CRG SR DF+ D      + LE+N  PG+T VS+FP+ A  AG SF EL+
Sbjct: 240 LATYRWLDCRGFSRIDFMVDHKGNP-YILEVNTIPGLTEVSLFPDAARAAGISFGELV 296


>gi|302391535|ref|YP_003827355.1| D-alanine/D-alanine ligase [Acetohalobium arabaticum DSM 5501]
 gi|302203612|gb|ADL12290.1| D-alanine/D-alanine ligase [Acetohalobium arabaticum DSM 5501]
          Length = 311

 Score =  196 bits (499), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 112/308 (36%), Positives = 185/308 (60%), Gaps = 15/308 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-VDRSVGLVLAHLKPDLAFNVLH 59
           +AV+ GG S ER++SL +GKA   ALE  G  V  +D  + +    L   + D+AF  LH
Sbjct: 5   VAVIRGGRSKERDISLKTGKAVYEALETEGVDVIALDPEEENFYQQLTTEEIDVAFIALH 64

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV--PVCPSILVNRFT 117
           G +GEDG +Q + E+++IPYT SG+LAS+L+MDK+ SK++    GV  P    I  N + 
Sbjct: 65  GRYGEDGTIQGLFEMMDIPYTGSGVLASSLAMDKIISKKLFQQEGVLTPEFKVISRNNWD 124

Query: 118 MDSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
             ++ L++        P V+KP   GSSLG+ +IKK +++   +   +++ + +++L+E+
Sbjct: 125 QQAEKLLTELKIELDLPVVVKPALEGSSLGLSIIKKRENLATAV--DTAFEYDNEVLVEK 182

Query: 171 YVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           Y+ G E+T G++G+  L V  I    PK+  Y +E KY+   +  V+PA++  +IY + Q
Sbjct: 183 YIAGKEITIGILGNQDLSVLPIIEIKPKTGAYDFEAKYTKGMTEFVIPAQLEEEIYNQAQ 242

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           ++A  A++ + C G++R+D +      K + LE+N  PGMT  S+ P+ A  AG  F EL
Sbjct: 243 KIANKAYRVLKCSGMARADLIVSK-EGKPYVLEVNTIPGMTETSLLPQAAQAAGIDFPEL 301

Query: 289 LLWMVEDA 296
           +L ++E A
Sbjct: 302 VLEILEYA 309


>gi|308272716|emb|CBX29320.1| D-alanine--D-alanine ligase [uncultured Desulfobacterium sp.]
          Length = 312

 Score =  196 bits (497), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 109/300 (36%), Positives = 178/300 (59%), Gaps = 13/300 (4%)

Query: 4   LMGGISSEREVSLSSGKACASALEDAGFKVSQID-VDRSVGLVLAHLKPDLAFNVLHGNF 62
           + GGIS EREVS  SG     AL+   + V + D   + + LV      D A  +LHG F
Sbjct: 1   MSGGISVEREVSRKSGDQVYDALDKTKYDVIRYDPASQLLHLVSDSSNIDFALIILHGPF 60

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT----M 118
           GEDG +Q +L+LL+IPY  SG+L SA++M+K  +KQ+    G+PV P I++ +       
Sbjct: 61  GEDGTIQGLLDLLDIPYQGSGVLGSAVAMNKFAAKQLYEQSGIPVPPYIMIKKGDPVEYK 120

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
             +  +  P+++KP+ GGSS+G+ ++K D+S   +    S+++  D +LIE +++GIE+T
Sbjct: 121 TCEKRLGSPFIVKPVSGGSSIGVSIVKSDKS--FNEAVESAFSCDDTVLIETFIEGIEIT 178

Query: 179 CGVMGDASLD---VTEIAVPKS-DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
            GV+G+  L+   + EI   K+  F+ Y  KY +  +  + PA+I   + ++ Q  A +A
Sbjct: 179 GGVIGNDELETLPIVEIIPDKAFKFFDYTAKYKTGATKEICPAQIDDTLTQQAQTYAKMA 238

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           H+A+ C+G SR+D +     ++++ LE N  PGMT  S+ P+ A  AG SF +LL  ++E
Sbjct: 239 HKALFCKGYSRTDMILS--GKEIYVLETNTIPGMTSTSLLPQAAQVAGISFSQLLDKLIE 296


>gi|217967341|ref|YP_002352847.1| D-alanine/D-alanine ligase [Dictyoglomus turgidum DSM 6724]
 gi|217336440|gb|ACK42233.1| D-alanine/D-alanine ligase [Dictyoglomus turgidum DSM 6724]
          Length = 311

 Score =  196 bits (497), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 104/303 (34%), Positives = 185/303 (61%), Gaps = 19/303 (6%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VL+G  SSE+E++L + +   +AL+  G+   +I +D +V   +   K D+A    HG
Sbjct: 3   VGVLIGVKSSEKEIALKTARNIINALKLKGYDYIEIPIDENVVENIKKSKIDVAIISAHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG +Q +LELL IPY  SG+LASAL++DKM +K++ +   +P      +++  +++
Sbjct: 63  KYGEDGTIQGLLELLGIPYVGSGVLASALALDKMMAKKIFTFHQIPTPKWKELSKKEIET 122

Query: 121 QHL---------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ--SSSWNHGDQLLIE 169
           + L         +  P++IKP   GS++G+ ++ +++    +LL+    ++ + + +++E
Sbjct: 123 RDLNEILKDLSYLKKPWIIKPATQGSTIGLSLVNQEE----ELLKGIELAFQYDENIIVE 178

Query: 170 QYVDGIELTCG---VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE 226
           +Y+ GIE+T G   V     L + EI +PK+ FY Y+ KY+   S H++PA++P ++Y++
Sbjct: 179 EYIKGIEITAGIYDVNKPICLPLIEI-IPKTGFYDYKTKYTPGLSDHIIPARLPKEVYEK 237

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
            Q L  LAHQA+GCR +SR D + +  +  ++ LE+N  PGMT  S++PE A   G  F 
Sbjct: 238 AQGLGILAHQALGCRHLSRVDMIVEENTNNIYVLEVNTIPGMTETSLYPEAAKAFGIEFP 297

Query: 287 ELL 289
           +L+
Sbjct: 298 DLI 300


>gi|259907419|ref|YP_002647775.1| D-alanine--D-alanine ligase [Erwinia pyrifoliae Ep1/96]
 gi|224963041|emb|CAX54524.1| D-alanine-D-alanine ligase [Erwinia pyrifoliae Ep1/96]
 gi|283477252|emb|CAY73165.1| D-alanine-D-alanine ligase [Erwinia pyrifoliae DSM 12163]
          Length = 306

 Score =  196 bits (497), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 114/303 (37%), Positives = 171/303 (56%), Gaps = 13/303 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+ER+VSL SG A    L++AG     +D+       L     D AF  LHG
Sbjct: 5   VAVLLGGTSAERDVSLLSGAAVLKGLQEAGIDAHAVDIRDFPVTRLNEEGFDKAFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119
             GEDG +Q +LELL+IPYT SG++ASA++MDK+RSK +   CG+PV P I +NR  MD 
Sbjct: 65  RGGEDGTLQGVLELLDIPYTGSGVMASAITMDKLRSKYLWQGCGLPVSPFIALNRVQMDA 124

Query: 120 --------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                   S + +  P  +KP + GSS+GI  + +   +   L++  ++ H D++L+E +
Sbjct: 125 GLDAQMMTSINALGLPLFVKPSREGSSVGISRVNQTSELQAALVE--AFRHDDEVLVEAF 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T GV+G   L    I    S+FY Y+ KY S  + +  P+ +  D   E++ L 
Sbjct: 183 LSGPEYTVGVLGSDILPSIRIQT-SSEFYDYDAKYISDETQYFCPSGLSADQETELRELT 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A +A+GC G  R D +        + LE+N  PGMT  S+ P  A  AG +F +L++ 
Sbjct: 242 IAAWRALGCSGWGRVDVMMGA-DGHFYLLEVNTSPGMTSHSLVPMAAKQAGMTFSQLVVR 300

Query: 292 MVE 294
           ++E
Sbjct: 301 ILE 303


>gi|170718786|ref|YP_001783968.1| D-alanine--D-alanine ligase [Haemophilus somnus 2336]
 gi|190359138|sp|B0US69|DDL_HAES2 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|168826915|gb|ACA32286.1| D-alanine--D-alanine ligase [Haemophilus somnus 2336]
          Length = 308

 Score =  195 bits (496), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 115/303 (37%), Positives = 182/303 (60%), Gaps = 16/303 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SG A  +AL + GF    ID       +L     D  FN+LHG
Sbjct: 10  IAVLLGGTSAEREVSLNSGNAVLTALRNQGFDAHPIDPKEYPVAMLKEQGFDRVFNILHG 69

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117
             GEDG +Q +LE + +PYT  G++ASAL+MDKMR+K +  + G+PV    +V R +   
Sbjct: 70  RGGEDGTIQGLLEQIGLPYTGCGVMASALTMDKMRTKMLWKAFGLPVADMEVVTRTSFSQ 129

Query: 118 MDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS---SWNHGDQLLIEQY 171
           ++ Q ++     P ++KP   GSS+G+  +       +D L+S+   +  + + +LIE++
Sbjct: 130 LNPQVVVEKLGLPLMVKPSLEGSSVGLTKVNA-----IDDLKSAVEFALQYDETVLIEEW 184

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G ELT  V+G+  L   +I VP+ +FY YE KY + N+ +  P+ +  +  +E+++L 
Sbjct: 185 LSGDELTVPVLGNEVLPSIKI-VPQGEFYDYEAKYIADNTQYFCPSGLTEEREQELRQLV 243

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A+  +GCRG SR D + D    K   +E+N  PGMT  S+FP+ AA  GYSF +L++ 
Sbjct: 244 KQAYDVVGCRGWSRIDVMLDG-EGKFRLVEVNTNPGMTSHSLFPKSAATVGYSFEQLVVK 302

Query: 292 MVE 294
           ++E
Sbjct: 303 ILE 305


>gi|257470795|ref|ZP_05634885.1| D-alanine--D-alanine ligase [Fusobacterium ulcerans ATCC 49185]
 gi|317064999|ref|ZP_07929484.1| D-alanine-D-alanine ligase [Fusobacterium ulcerans ATCC 49185]
 gi|313690675|gb|EFS27510.1| D-alanine-D-alanine ligase [Fusobacterium ulcerans ATCC 49185]
          Length = 288

 Score =  195 bits (496), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 119/296 (40%), Positives = 167/296 (56%), Gaps = 16/296 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL--KPDLAFNVL 58
           +AV MGGISSEREVSL+SGKA   +L   G+    IDV +   LV A +  + D A+   
Sbjct: 3   IAVFMGGISSEREVSLNSGKAILESLLKQGYDAYGIDVTKE-NLVSAFIDNEYDFAYLAF 61

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
           HG FGEDG VQ +L++L  PYT SG  AS ++MDK+ +K++  S GV V  +        
Sbjct: 62  HGGFGEDGRVQGLLDMLGKPYTGSGAEASGIAMDKVITKKLAESAGVRVAKNY------D 115

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
               + S P VIKP   GSS+GI      +       +++    G +++IE+ + G ELT
Sbjct: 116 KVSDIDSYPVVIKPALEGSSVGIFFCHNREEAE----KAAGELVGKKIVIEEMITGDELT 171

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
            GV+    + V  I +PK++FY YE KY+   S H  PAKI    Y E    A   H  +
Sbjct: 172 VGVINGEGIGVLRI-IPKNEFYDYESKYAEGGSVHEYPAKIDKKAYDEALENAVKVHNVL 230

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           G  GISRSDF+      KV++LE+N  PGMT  S+ P++A   GY++ +++  MVE
Sbjct: 231 GLAGISRSDFILK--DDKVYFLEVNTLPGMTKTSLIPDLATLKGYTYDDVVRIMVE 284


>gi|220918999|ref|YP_002494303.1| D-alanine/D-alanine ligase [Anaeromyxobacter dehalogenans 2CP-1]
 gi|254767715|sp|B8J8F1|DDL_ANAD2 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|219956853|gb|ACL67237.1| D-alanine/D-alanine ligase [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 308

 Score =  195 bits (495), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 115/301 (38%), Positives = 173/301 (57%), Gaps = 8/301 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG SSEREVSL +G ACA AL   G +V  +DVD  V   L   + ++AF  LHG
Sbjct: 9   VAVLYGGRSSEREVSLRTGAACADALRQKGHEVVLLDVDLEVAARLRAERVEVAFVALHG 68

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG +Q +LE + IPYT SG+LASA+ MDK  SK +  S G+ V    +  R +  S
Sbjct: 69  RFGEDGSIQGLLESMAIPYTGSGVLASAMGMDKTVSKAIFRSLGLAVADYRVFPRASAGS 128

Query: 121 QHLISPPY----VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
             +   P+    V+KP   GSS+G+ ++  +++  L      + +H   +++E+YV G E
Sbjct: 129 IGVGDLPFGLPCVVKPAGEGSSVGVHLV--NEAAELGPACRDAASHAGDVIVERYVKGTE 186

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +   V+   +L   EI VP + FY Y  KY++  + +  PA++P    + V + A  AH+
Sbjct: 187 VDVAVLDGKALGAIEI-VPANAFYDYAAKYTAGTTKYFYPARLPEAHVRAVMQAAEAAHR 245

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            IGC G++R DF+        + LE+N  PGMT  S+ P++AA  G SF +L   +++ A
Sbjct: 246 GIGCSGVTRVDFIVAG-DGTPYILEVNTLPGMTATSLVPKIAAGLGLSFPDLCERILDGA 304

Query: 297 S 297
           +
Sbjct: 305 A 305


>gi|113460506|ref|YP_718570.1| D-alanine--D-alanine ligase [Haemophilus somnus 129PT]
 gi|123131919|sp|Q0I1D1|DDL_HAES1 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|112822549|gb|ABI24638.1| D-alanine--D-alanine ligase [Haemophilus somnus 129PT]
          Length = 308

 Score =  194 bits (494), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 114/303 (37%), Positives = 182/303 (60%), Gaps = 16/303 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SG A  +AL + GF    ID       +L     D  FN+LHG
Sbjct: 10  IAVLLGGTSAEREVSLNSGNAVLTALRNQGFDAHPIDPKEYPVAMLKEQGFDRVFNILHG 69

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117
             GEDG +Q +LE + +PYT  G++ASAL+MDKMR+K +  + G+PV    +V R +   
Sbjct: 70  RGGEDGTIQGLLEQIGLPYTGCGVMASALTMDKMRTKMLWKAFGLPVADMEVVTRTSFSQ 129

Query: 118 MDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS---SWNHGDQLLIEQY 171
           ++ Q ++     P ++KP   GSS+G+  +       +D L+S+   +  + + +LIE++
Sbjct: 130 LNPQVVVEKLGLPLMVKPSLEGSSVGLTKVNA-----IDDLKSAVEFALQYDETVLIEEW 184

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G ELT  ++G+  L   +I VP+ +FY YE KY + N+ +  P+ +  +  +E+++L 
Sbjct: 185 LSGDELTVPILGNEVLPSIKI-VPQGEFYDYEAKYIADNTQYFCPSGLTEEREQELRQLV 243

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A+  +GCRG SR D + D    K   +E+N  PGMT  S+FP+ AA  GYSF +L++ 
Sbjct: 244 KQAYDVVGCRGWSRIDVMLDG-EGKFRLVEVNTNPGMTSHSLFPKSAATVGYSFEQLVVK 302

Query: 292 MVE 294
           ++E
Sbjct: 303 ILE 305


>gi|108760939|ref|YP_633740.1| D-alanine--D-alanine ligase [Myxococcus xanthus DK 1622]
 gi|108464819|gb|ABF90004.1| D-alanine--D-alanine ligase [Myxococcus xanthus DK 1622]
          Length = 318

 Score =  194 bits (493), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 120/305 (39%), Positives = 173/305 (56%), Gaps = 10/305 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VL+GG+S+ER+VSL +G+A + AL   G+ V +IDV R +   LA  K D+A+  +HG
Sbjct: 18  VGVLLGGMSAERDVSLRTGEAVSGALRGLGYDVVEIDVGRDLPARLAAEKVDVAWLAVHG 77

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG +Q +LE L IPYT SG+LASAL MDK+ +KQV  + G+P              
Sbjct: 78  RYGEDGCLQGLLESLFIPYTGSGVLASALGMDKVYAKQVYVAHGIPTPAYRSFKDAASAL 137

Query: 121 QHLISPPY----VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
               S P+    V+KP + GSS+G+ + K   +    +  ++ +     LL+EQ+V G E
Sbjct: 138 AAADSLPFPFPVVVKPSREGSSVGVHICKTRDAYEAAVTDAAKY--AGTLLVEQFVKGRE 195

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAH 235
           +  GV+ D +L V E+   + +FY Y+ KY +   T  L PA +P D Y  V  +   AH
Sbjct: 196 VQGGVLDDEALGVIEVRAAR-EFYDYDAKYKAGTGTQYLFPAPLPPDQYARVNEVCLAAH 254

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           QA+GC G SRSD +       VF LE N  PGMT  S+ P++AA  G  F  L   ++  
Sbjct: 255 QALGCSGGSRSDVIVTD-GGDVFLLETNTLPGMTASSLLPKIAAGRGIDFPALCERLLLG 313

Query: 296 ASCLR 300
           A CL+
Sbjct: 314 A-CLK 317


>gi|254521243|ref|ZP_05133298.1| D-alanine--D-alanine ligase B [Stenotrophomonas sp. SKA14]
 gi|219718834|gb|EED37359.1| D-alanine--D-alanine ligase B [Stenotrophomonas sp. SKA14]
          Length = 320

 Score =  194 bits (493), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 122/300 (40%), Positives = 173/300 (57%), Gaps = 13/300 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG SSEREVSL SG+    AL+  G     +D   ++  VLA    D  FN+LHG
Sbjct: 20  VAVLLGGSSSEREVSLDSGRNVLEALQARGIDAFAVDGIPALAKVLAAGGVDRVFNILHG 79

Query: 61  NFG--EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
           + G  EDG+VQ +++   +PYT S +L SALSMDK+R+KQV  S G+P      V+  T+
Sbjct: 80  HNGGGEDGIVQGLMDAFGVPYTGSNVLGSALSMDKIRTKQVWLSLGLPTPQYRKVDSSTV 139

Query: 119 DSQHLISP----PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
              H+++     P V+KP   GSS+GI  +  D    LD   + +  +  QLL+EQ V G
Sbjct: 140 ---HVLAAELGLPVVVKPANEGSSVGISRVTDDAG--LDEAVALAARYDGQLLMEQMVVG 194

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
            ELT  ++GD +L    I VPK  +Y Y  KY + ++ ++ P     D   E++R+A  A
Sbjct: 195 DELTVAILGDVALPSIRI-VPKGQWYDYNAKYIAEDTQYLCPGLDGAD-EDEIRRIALAA 252

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            +A GCRG  R D + D  S + F LE+N  PGMT  S+ P+ AA AG  F EL+  ++E
Sbjct: 253 FRAAGCRGWGRVDVMRDRASGRFFLLEVNTAPGMTSHSLVPKAAAQAGIGFEELVWRVLE 312


>gi|197124219|ref|YP_002136170.1| D-alanine--D-alanine ligase [Anaeromyxobacter sp. K]
 gi|229485856|sp|B4UES4|DDL_ANASK RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|196174068|gb|ACG75041.1| D-alanine/D-alanine ligase [Anaeromyxobacter sp. K]
          Length = 308

 Score =  194 bits (493), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 115/301 (38%), Positives = 171/301 (56%), Gaps = 8/301 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG SSEREVSL +G ACA AL   G  V  +DVD  V   L   + ++AF  LHG
Sbjct: 9   VAVLYGGRSSEREVSLRTGAACADALRQKGHDVVLLDVDLEVAARLRAERVEVAFVALHG 68

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG +Q +LE + IPYT SG+LASA+ MDK  SK +  S G+ V    +  R +  S
Sbjct: 69  RFGEDGSIQGLLESMAIPYTGSGVLASAMGMDKTVSKAIFRSLGLAVADYRVFPRASAGS 128

Query: 121 QHLISPPY----VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
             +   P+    V+KP   GSS+G+ ++  +++  L      + +H   +++E+YV G E
Sbjct: 129 IGVGDLPFGLPCVVKPAGEGSSVGVHLV--NEAAELGPACRDAASHAGDVIVERYVKGTE 186

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +   V+   +L   EI VP + FY Y  KY++  + +  PA++P    + V   A  AH+
Sbjct: 187 VDVAVLDGKALGAIEI-VPANAFYDYAAKYTAGTTKYFYPARLPEAHVRAVMEAAEAAHR 245

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            IGC G++R DF+        + LE+N  PGMT  S+ P++AA  G SF +L   +++ A
Sbjct: 246 GIGCSGVTRVDFIVAG-DGTPYILEVNTLPGMTATSLVPKIAAGLGLSFPDLCERILDGA 304

Query: 297 S 297
           +
Sbjct: 305 A 305


>gi|258515376|ref|YP_003191598.1| D-alanine--D-alanine ligase [Desulfotomaculum acetoxidans DSM 771]
 gi|257779081|gb|ACV62975.1| D-alanine/D-alanine ligase [Desulfotomaculum acetoxidans DSM 771]
          Length = 314

 Score =  194 bits (492), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 113/309 (36%), Positives = 181/309 (58%), Gaps = 17/309 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VL+GG S+EREVSL +G+A   AL   G++V +IDV  ++   +     D+AF  LHG
Sbjct: 5   IGVLLGGKSAEREVSLRTGEAIYKALLGLGYQVVKIDVQENIAERIKEESIDMAFLALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG +Q +LE+L IPYT SG+LASAL+MDK+ +K+++    +P     L+ R + ++
Sbjct: 65  KYGEDGCIQGLLEILNIPYTGSGVLASALAMDKIATKRMLLQAKLPTAEFSLIRRSSYNN 124

Query: 121 Q----------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +            +  P V+K    GS++GI  +  ++ +P D L+  ++ +    LIEQ
Sbjct: 125 ETKEEICQTLFKYMPLPLVVKAPTQGSTIGISFVNNEEQLP-DALE-EAFRYDPIALIEQ 182

Query: 171 YVDGIELTCGVMGD---ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227
           ++ G E+T  V+G+    +L + EI V  +  Y Y+ KY+   S H++P ++  ++ K V
Sbjct: 183 FISGTEVTATVLGNNQPEALPLIEI-VSNTGVYDYKAKYTVGLSDHIMPPRLKEEVQKNV 241

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287
           Q LA    + +GC G++R DF+ D  S   + LEIN  PGMT  S+ P+ A  AG SF +
Sbjct: 242 QELAVKVFKTMGCSGLARVDFIVDANSNP-YILEINTIPGMTETSLAPDAARAAGISFTD 300

Query: 288 LLLWMVEDA 296
           L   M++ A
Sbjct: 301 LTDRMIKFA 309


>gi|257452941|ref|ZP_05618240.1| D-alanine--D-alanine ligase [Fusobacterium sp. 3_1_5R]
 gi|317059482|ref|ZP_07923967.1| D-alanine-D-alanine ligase [Fusobacterium sp. 3_1_5R]
 gi|313685158|gb|EFS21993.1| D-alanine-D-alanine ligase [Fusobacterium sp. 3_1_5R]
          Length = 288

 Score =  194 bits (492), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 112/297 (37%), Positives = 177/297 (59%), Gaps = 14/297 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-DRSVGLVLAHLKPDLAFNVLH 59
           +AV MGG+SSE+EVS+ SG+A   +L+  G+    + + ++++       + DLA+  LH
Sbjct: 3   IAVFMGGVSSEKEVSIRSGEAILESLQRQGYDAYGVVLTEKNMISAFQEEQYDLAYLALH 62

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G  GE+G +Q++LELL   YT SG+ ASA+SMDK+ +K++ S  GV +  +     FT  
Sbjct: 63  GGAGENGEIQSVLELLGKKYTGSGVAASAISMDKLLTKKIASLEGVRMAKT-----FTTV 117

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
           ++ +   P ++KP K GSS+GI V    + +   L + S +      +IE+Y+ G ELT 
Sbjct: 118 AE-ISRYPVMVKPSKDGSSVGIHVCNNQEEVEKALQEISGY-----AMIEEYIQGEELTV 171

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
           GV+   +L V +I    +D Y YE KY++  S H  PA+I    Y+E    A   H+A+G
Sbjct: 172 GVLNGKALGVLKIIPQAADIYDYESKYAAGGSIHEFPARIAKIAYEEAMVNAVKIHEALG 231

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            +G+SRSDF+      +V++LE+N  PGMT  S+ P++A   GY+F ++   +VEDA
Sbjct: 232 MKGVSRSDFILK--DDQVYFLEVNACPGMTKTSLVPDLATLQGYTFDDITRILVEDA 286


>gi|257466679|ref|ZP_05630990.1| D-alanine--D-alanine ligase [Fusobacterium gonidiaformans ATCC
           25563]
 gi|315917832|ref|ZP_07914072.1| D-alanine-D-alanine ligase [Fusobacterium gonidiaformans ATCC
           25563]
 gi|313691707|gb|EFS28542.1| D-alanine-D-alanine ligase [Fusobacterium gonidiaformans ATCC
           25563]
          Length = 288

 Score =  192 bits (489), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 111/297 (37%), Positives = 172/297 (57%), Gaps = 14/297 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL-VLAHLKPDLAFNVLH 59
           +AV MGG+SSE+EVS+ SG+A   +L+  G+    + + +   +        DLA+  LH
Sbjct: 3   IAVFMGGVSSEKEVSIRSGEAILESLQRQGYDAYGVVLTKENMISAFQDENYDLAYLALH 62

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G  GE+G +Q++LELL   YT SG+ ASA+SMDK+ +K++ S  GV +  +        +
Sbjct: 63  GGAGENGEIQSVLELLGKKYTGSGVAASAISMDKLLTKKIASLEGVRMAKTY------SN 116

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
              + S P ++KP K GSS+GI V    + +   L + S +      +IE+Y+ G ELT 
Sbjct: 117 VAEISSYPVMVKPSKDGSSVGIHVCNNQEEVEKALQEISGY-----AMIEEYIQGEELTV 171

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
           GV+   +L V +I    +D Y YE KY++  S H  PA+I    Y+E    A   H+A+G
Sbjct: 172 GVLNGKALGVLKIIPQAADIYDYESKYAAGGSIHEFPARIAKIAYEEAMVNAVKIHEALG 231

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            +G+SRSDF+      +V++LE+N  PGMT  S+ P++A   GY+F ++   +VEDA
Sbjct: 232 MKGVSRSDFILK--DDQVYFLEVNACPGMTKTSLVPDLATLQGYTFDDITRMLVEDA 286


>gi|302334812|ref|YP_003800019.1| D-alanine--D-alanine ligase [Olsenella uli DSM 7084]
 gi|301318652|gb|ADK67139.1| D-alanine--D-alanine ligase [Olsenella uli DSM 7084]
          Length = 330

 Score =  192 bits (489), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 118/308 (38%), Positives = 174/308 (56%), Gaps = 20/308 (6%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGF-KVSQIDV---DRSVGLVLAHLKPDLAFN 56
           +AVL GG S ER++SL SG AC  AL +AGF +V  +D+   D +  L+      D+AF 
Sbjct: 11  VAVLSGGWSDERDISLQSGMACMGALREAGFVRVELLDIAAPDFAARLLDGRF--DVAFV 68

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--- 113
            LHG +GEDG +Q +LE+L IPYT SG+LASA+  +K  +K +    G+PV   + +   
Sbjct: 69  ALHGRYGEDGCIQGLLEVLHIPYTFSGVLASAVGTEKAVAKALYREAGIPVPEGVDLPEG 128

Query: 114 NRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            R T D        +  P  +KP   GSS G+  + +   +   + +++S   GD++L+E
Sbjct: 129 TRLTSDQADRLVRTLGLPLFVKPAANGSSFGVTRVTETAQLADAVARAAS--EGDRVLVE 186

Query: 170 QYVDGIELTCGVMGD---ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE 226
             V+G E+T  V+G+    +L + EIA   S+FY  ++KY      HV+PA++    Y+ 
Sbjct: 187 TCVEGTEITVPVIGNDDPVALPIVEIAF-DSEFYDAKVKYEPAALHHVIPARLDQTTYER 245

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
              LA  AH+A+GCRG+SRSDF+       V  LE N  PGMT  S+ P+ A +AG  F 
Sbjct: 246 ASELAVRAHRALGCRGVSRSDFIVTAEGAPVI-LETNTIPGMTETSLLPDSARHAGIGFP 304

Query: 287 ELLLWMVE 294
           +L    VE
Sbjct: 305 DLCRRFVE 312


>gi|196230904|ref|ZP_03129765.1| D-alanine/D-alanine ligase [Chthoniobacter flavus Ellin428]
 gi|196225245|gb|EDY19754.1| D-alanine/D-alanine ligase [Chthoniobacter flavus Ellin428]
          Length = 315

 Score =  192 bits (489), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 120/301 (39%), Positives = 177/301 (58%), Gaps = 17/301 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG  SER+VSL+SG   A+AL   G  V+++DV+ S  +V A    D+AFNV+HG
Sbjct: 17  IAVLMGGPGSERKVSLASGAGVANALRTLGADVTEVDVNGSDFIVPAGT--DVAFNVIHG 74

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG +Q ILE   + YT  G+  S L++DK+ +KQ      VP     ++     D 
Sbjct: 75  TFGEDGQIQRILESRGVAYTGEGVANSELAIDKIATKQCFQKHHVPTAAFEILR----DG 130

Query: 121 QHLISP-PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
            +   P PYV+K  K GSS+G+ +++++  +  D ++  +W++G +LL+E +++G ELT 
Sbjct: 131 ANPTLPLPYVVKAPKEGSSVGVFIVREEAKV-ADTMR-EAWSYGKELLVEDFINGRELTV 188

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLN------STHVLPAKIPLDIYKEVQRLAFL 233
           GV+GD +L + EI  P  DFY+++ KY  LN      + H  PA I  ++ + VQ +A  
Sbjct: 189 GVLGDQALPIIEIK-PAKDFYNFDNKYPFLNPKAGGAAEHTCPAMISDELTRRVQEVALA 247

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           A +AI      R D L        + LEIN  PGMT VS+ PE AA AG S+ EL   ++
Sbjct: 248 AARAIHLETYCRVDVLLTGAGEP-YVLEINTIPGMTQVSLLPEAAAAAGISYAELCARVI 306

Query: 294 E 294
           E
Sbjct: 307 E 307


>gi|206900336|ref|YP_002250669.1| D-alanine--D-alanine ligase [Dictyoglomus thermophilum H-6-12]
 gi|206739439|gb|ACI18497.1| D-alanine--D-alanine ligase [Dictyoglomus thermophilum H-6-12]
          Length = 311

 Score =  192 bits (489), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 102/303 (33%), Positives = 180/303 (59%), Gaps = 19/303 (6%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VL+G  SSE+E++  + +   +AL+  G+   +I +D +V   +     ++A    HG
Sbjct: 3   IGVLIGVKSSEKEIAFKTARNIVNALKLKGYDYIEIPIDENVVENIKKANINVAIISAHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG +Q +LELL IPY  SG+LASAL++DK  +K++ +   +P    I +++  +++
Sbjct: 63  KYGEDGTIQGLLELLGIPYVGSGVLASALALDKTMAKKIFTFHNIPTPKWIELSKKELET 122

Query: 121 QHL---------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ--SSSWNHGDQLLIE 169
           + L         +  P++IKP   GS++G+ +   ++    +LL+    ++ + + ++IE
Sbjct: 123 KDLNNIVKNVSKLKKPWIIKPATQGSTIGLSLASTEE----ELLKGIELAFKYDENIIIE 178

Query: 170 QYVDGIELTCGVM---GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE 226
           +Y+ G E+T G+        L + EI +PK+ FY YE KY+   S H++PA++P ++Y++
Sbjct: 179 EYIKGKEITAGIYDINNPVCLPLIEI-IPKTGFYDYETKYTPGLSDHIIPARLPKEVYEK 237

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
            Q L  LAHQA+GCR +SR D + +  +  ++ LE+N  PGMT  S++PE A   G  F 
Sbjct: 238 AQGLGILAHQALGCRHLSRVDMIVEENTNHIYVLEVNTIPGMTETSLYPEAAKAFGIDFP 297

Query: 287 ELL 289
           EL+
Sbjct: 298 ELI 300


>gi|227327089|ref|ZP_03831113.1| D-alanine--D-alanine ligase [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 306

 Score =  192 bits (488), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 114/307 (37%), Positives = 171/307 (55%), Gaps = 17/307 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL SG+A  + L+DAG     +D        L        F  LHG
Sbjct: 5   VAVLLGGTSAEREVSLLSGQAVLAGLKDAGINAHAVDTRDVSVTTLKEEGFTKIFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LE L +PYT SG++ASAL+MDK+R+KQV  + G+PV P + ++R     
Sbjct: 65  RGGEDGTLQGVLEFLGLPYTGSGVMASALTMDKLRTKQVWQAVGLPVSPYVALDRRQYSE 124

Query: 121 ----------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                      HL   P ++KP + GSS+G+  +     +P  L    ++ H D +L+E+
Sbjct: 125 TAANALLAKFTHL-GLPLIVKPSREGSSVGMSKVNTLSELPAAL--EEAFRHDDDILVEK 181

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
           ++ G E T  ++GD  L    I  P   FY YE KY S ++ +  P+ +P +  + +  L
Sbjct: 182 WLSGPEYTVAILGDEVLPSIRIQ-PAGTFYDYEAKYLSDDTQYFCPSGLPDEQEQALAGL 240

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           A  A++A+GC G  R DF+ D  S   F+ LE+N  PGMT  S+ P  A   G +F +L+
Sbjct: 241 AMAAYRAVGCSGWGRVDFMLD--SDGAFYLLEVNTSPGMTSHSLVPMAARQRGLTFSQLV 298

Query: 290 LWMVEDA 296
           + ++E A
Sbjct: 299 VKILERA 305


>gi|323701728|ref|ZP_08113399.1| D-alanine/D-alanine ligase [Desulfotomaculum nigrificans DSM 574]
 gi|323533264|gb|EGB23132.1| D-alanine/D-alanine ligase [Desulfotomaculum nigrificans DSM 574]
          Length = 311

 Score =  192 bits (488), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 108/307 (35%), Positives = 183/307 (59%), Gaps = 18/307 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VL GG S+EREVSL SG+A   AL + G+ V +IDV   +   +   + +LAF  LHG
Sbjct: 5   VGVLCGGRSAEREVSLRSGEAVYQALLNCGYDVVKIDVGFDIAEQIKQHQIELAFLALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG +Q +LELL+IPYT SG+LASA++++K+ +K++    G+P     ++ R  + +
Sbjct: 65  KYGEDGTIQGLLELLDIPYTGSGVLASAIAINKITTKKLFKLEGIPTPDFTVITRNEVSN 124

Query: 121 ---QH-------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
               H       L+  P V+K    GS++GI  + + + +   + +S  ++    +L+E+
Sbjct: 125 LGLDHACKKALDLVGLPAVVKANTQGSTIGISFVHQAEQMGAAIEESLKYDQ--DVLVEK 182

Query: 171 YVDGIELTCGVMGD---ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227
           ++ G+E+T  V+G+    +L + EI    +  Y Y+ KY+   S H++P ++P +   ++
Sbjct: 183 FISGMEVTASVLGNQDPVALPLIEI-TSVTGVYDYQAKYTPGISDHIIPPRLPEETQNKI 241

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287
           ++LA  A Q +GCRG+ R DF+      +V+ LE+N  PGMT  S+FP+ A YAG  F +
Sbjct: 242 KQLAVKAFQVLGCRGLGRVDFMVQ--GSEVYALEVNTLPGMTATSLFPDAARYAGMEFPQ 299

Query: 288 LLLWMVE 294
           L+  +V+
Sbjct: 300 LVDKLVK 306


>gi|283468526|emb|CAP18807.1| putative D-ala D-ala ligase [Chthoniobacter flavus Ellin428]
          Length = 308

 Score =  192 bits (487), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 119/301 (39%), Positives = 175/301 (58%), Gaps = 17/301 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG  SER+VSL+SG   A+AL   G  V+++DV+ S  +V A    D+AFNV+HG
Sbjct: 10  IAVLMGGPGSERKVSLASGAGVANALRTLGADVTEVDVNGSDFIVPAGT--DVAFNVIHG 67

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG +Q ILE   + YT  G+  S L++DK+  KQ      VP     ++     D 
Sbjct: 68  TFGEDGQIQRILESRGVAYTGEGVANSELAIDKIAKKQCFQKHHVPTAAFEILR----DG 123

Query: 121 QHLISP-PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
            +   P PYV+K  K GSS+G+ +++++  +   + +  +W++G +LL+E +++G ELT 
Sbjct: 124 ANPTLPLPYVVKAPKEGSSVGVFIVREEAKVADTMRE--AWSYGKELLVEDFINGRELTV 181

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLN------STHVLPAKIPLDIYKEVQRLAFL 233
           GV+GD +L + EI  P  DFY+++ KY  LN      + H  PA I  ++ + VQ +A  
Sbjct: 182 GVLGDQALPIIEIK-PAKDFYNFDNKYPFLNPKAGGAAEHTCPAMISDELTRRVQEVALA 240

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           A +AI      R D L        + LEIN  PGMT VS+ PE AA AG S+ EL   ++
Sbjct: 241 AARAIHLETYCRVDVLLTGAGEP-YVLEINTIPGMTQVSLLPEAAAAAGISYAELCARVI 299

Query: 294 E 294
           E
Sbjct: 300 E 300


>gi|227113984|ref|ZP_03827640.1| D-alanine--D-alanine ligase [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 306

 Score =  192 bits (487), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 114/305 (37%), Positives = 170/305 (55%), Gaps = 17/305 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL SG+A  + L++AG     +D        L        F  LHG
Sbjct: 5   VAVLLGGTSAEREVSLLSGQAVLAGLKEAGINAHAVDTRDVSVTTLKEEGFTKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LE L +PYT SG++ASAL+MDK+R+KQV  + G+PV P + ++R     
Sbjct: 65  RGGEDGTLQGVLEFLGLPYTGSGVMASALTMDKLRTKQVWQAVGLPVSPYVALDRRQYSE 124

Query: 121 ----------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                      HL   P ++KP + GSS+G+  +     +P  L    ++ H D +LIE+
Sbjct: 125 TAANALLAKFTHL-GLPLIVKPSREGSSVGMSKVNTLSELPAAL--EEAFRHDDDILIEK 181

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
           ++ G E T  ++GD  L    I  P   FY YE KY S ++ +  P+ +P D  + +  L
Sbjct: 182 WLSGPEYTVAILGDDVLPSIRIQ-PAGTFYDYEAKYLSDDTQYFCPSGLPDDQEQALAGL 240

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           A  A++A+GC G  R DF+ D  S   F+ LE+N  PGMT  S+ P  A   G +F +L+
Sbjct: 241 AMAAYRAVGCSGWGRVDFMLD--SDGAFYLLEVNTSPGMTSHSLVPMAARQRGLTFSQLV 298

Query: 290 LWMVE 294
           + ++E
Sbjct: 299 VKILE 303


>gi|91200089|emb|CAJ73132.1| strongly similar to D-alanine:D-alanine ligase [Candidatus Kuenenia
           stuttgartiensis]
          Length = 334

 Score =  192 bits (487), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 127/320 (39%), Positives = 169/320 (52%), Gaps = 27/320 (8%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG+S ERE+SL SG A A AL+DAG  V  IDV       L H + D+AF  LHG
Sbjct: 6   IAVLMGGVSPEREISLRSGNAVAKALKDAGNNVICIDVKDEDIKELDHKEIDVAFIALHG 65

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--FTM 118
            FGEDG VQ +LE+  IPYT SG+ AS ++MDK+ SK+     G+      L+ +     
Sbjct: 66  YFGEDGRVQQLLEVKGIPYTGSGVDASRIAMDKVESKRCFLDAGLKTPEYFLLKKPVNLA 125

Query: 119 DSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175
           D +  I     P VIKP  GGSS+G+ +IK+  +    +    +   GD+  +E+YV G 
Sbjct: 126 DIEQEIQEFGLPVVIKPTNGGSSIGVSIIKEGNNFHYHV--GEALKCGDEAFVERYVSGR 183

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS------------LNSTHVLPAK----- 218
           E T G++   SL + EI V   DF+ Y  KY+S             N T++L        
Sbjct: 184 EFTIGILDSRSLPIIEICVA-DDFFDYNAKYNSGKTRYFVINKTFENKTNILNTPCCDVG 242

Query: 219 -IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
            +   +Y + Q LA  AH AIGCRG SR D L D      + LE+N  PG T  S+ P  
Sbjct: 243 FLDAALYDKAQELAIEAHNAIGCRGFSRVDILLDN-KNDFYILEVNTIPGFTEKSLLPMA 301

Query: 278 AAYAGYSFRELLLWMVEDAS 297
           A  A  SF  L   +V+ AS
Sbjct: 302 ARAADISFTSLCEKIVDLAS 321


>gi|288556059|ref|YP_003427994.1| D-alanine--D-alanine ligase [Bacillus pseudofirmus OF4]
 gi|288547219|gb|ADC51102.1| D-alanine--D-alanine ligase [Bacillus pseudofirmus OF4]
          Length = 305

 Score =  192 bits (487), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 116/301 (38%), Positives = 179/301 (59%), Gaps = 10/301 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GGIS+EREVSLSSGK   +AL+  G +V  ID        L +L+ DL +  LHG
Sbjct: 3   IAVLYGGISAEREVSLSSGKGIINALKANGHEVIGIDFHPDRLEDLLNLEVDLVYIGLHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG VQA+L++L I Y  SG+  SAL+MDK +SK      G  +    ++ + + D 
Sbjct: 63  RYGEDGKVQALLDMLNINYVGSGVQGSALAMDKAKSKLFFEREGTRIAKQHVLYKHSYDP 122

Query: 121 QHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
           +     I  P V+KP + GS++GI   + ++ + L+ ++  ++   + +L+E+++ G E+
Sbjct: 123 ETTAIEIPFPVVVKPNQEGSTIGITFAENEEEL-LNGIE-EAFKLDETVLLEEFIKGREV 180

Query: 178 TCGVMGD----ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           T  VMG+     +L V EI VPK+ +Y YE KY++  S H++PA++  +    VQ+ A L
Sbjct: 181 TVAVMGNKGREKALPVVEI-VPKNKYYDYEAKYAAGMSEHIVPARLTSEQTDYVQKHAVL 239

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           AHQA+GC   SR DF+          LE+N  PGMTP S++P+ A   G S+ E++   V
Sbjct: 240 AHQALGCDIYSRVDFIVPDDGGAPVILEVNTLPGMTPTSLYPDAAREIGLSYDEMIETFV 299

Query: 294 E 294
           +
Sbjct: 300 Q 300


>gi|253581417|ref|ZP_04858643.1| D-alanine-D-alanine ligase [Fusobacterium varium ATCC 27725]
 gi|251836781|gb|EES65315.1| D-alanine-D-alanine ligase [Fusobacterium varium ATCC 27725]
          Length = 288

 Score =  191 bits (486), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 117/296 (39%), Positives = 166/296 (56%), Gaps = 16/296 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--DLAFNVL 58
           +AV MGGISSEREVSL+SGKA   +L   G+    IDV +   LV A ++   D A+   
Sbjct: 3   IAVFMGGISSEREVSLNSGKAILESLLKQGYDAYGIDVTKE-NLVSAFIENEYDFAYLAF 61

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
           HG FGEDG VQ +L++L  PYT SG  AS ++MDK+ +K++  S GV +  +        
Sbjct: 62  HGGFGEDGRVQGLLDMLGKPYTGSGAEASGIAMDKIITKKLAESVGVRIAKNY------D 115

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
               + S P VIKP   GSS+ I      +       ++ +   G +++IE+ + G ELT
Sbjct: 116 KVADIDSYPVVIKPALEGSSVEIFFCYNREEAE----KAVAELKGKKIVIEEMITGEELT 171

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
            GV+    + V  I +PK++FY YE KY+   S H  PAKI    Y E    A   H  +
Sbjct: 172 VGVINGEGIGVLRI-IPKNEFYDYESKYAEGGSIHEYPAKIDKKAYDEALENAVKVHNVL 230

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           G  GISRSDF+      KV++LE+N  PGMT  S+ P++A   GY++ +++  MVE
Sbjct: 231 GLAGISRSDFILK--DDKVYFLEVNTLPGMTKTSLIPDLATLKGYTYDDVVRIMVE 284


>gi|152979584|ref|YP_001345213.1| D-alanine--D-alanine ligase [Actinobacillus succinogenes 130Z]
 gi|171704373|sp|A6VQN1|DDL_ACTSZ RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|150841307|gb|ABR75278.1| D-alanine--D-alanine ligase [Actinobacillus succinogenes 130Z]
          Length = 307

 Score =  191 bits (486), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 115/301 (38%), Positives = 176/301 (58%), Gaps = 12/301 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG +SEREVSL+SG A   AL   G+    +D        L     +  FN+LHG
Sbjct: 9   IAVLLGGTASEREVSLNSGAAVLDALRSQGYDAHPVDPKDMPVADLKQQGFERVFNILHG 68

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117
             GEDG++Q +LE + +PYT  G++ SAL+MDKMR+K +    G+P+    +V + T   
Sbjct: 69  RGGEDGVIQGVLEQIGLPYTGCGVMTSALTMDKMRTKMLWKGFGLPIADMEIVTKNTALS 128

Query: 118 MDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
           ++ Q +++    P ++KP + GSS+G+   K D +  L      +    D +LIE+++ G
Sbjct: 129 LEPQAIVARLGLPLMVKPSREGSSVGL--TKVDSADKLKSAVDLALKFDDIVLIEEWLSG 186

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
            ELT  V+GD  L   +I VP+ +FY Y  KY S N+ ++ P  +  + + E++ L   A
Sbjct: 187 DELTVPVLGDEVLPAVQI-VPEGEFYDYNAKYISDNTRYICPMPMSDERWDELKNLVKRA 245

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWL-EINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           ++A+GCRG SR D + D  S   F L E+N  PGMT  S+FP+ AA  GYSF +L+  ++
Sbjct: 246 YEAVGCRGWSRIDVMTD--SEGNFRLIEVNTTPGMTSHSLFPKSAATVGYSFEKLVEKIL 303

Query: 294 E 294
           E
Sbjct: 304 E 304


>gi|260913005|ref|ZP_05919490.1| D-alanine-D-alanine ligase B [Pasteurella dagmatis ATCC 43325]
 gi|260632995|gb|EEX51161.1| D-alanine-D-alanine ligase B [Pasteurella dagmatis ATCC 43325]
          Length = 318

 Score =  191 bits (485), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 118/303 (38%), Positives = 177/303 (58%), Gaps = 16/303 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SG+A  +AL +AGF    ID        L     D  FN+LHG
Sbjct: 19  IAVLLGGTSAEREVSLNSGQAVLNALLNAGFDAHPIDPKNFPVASLKEQGFDRVFNILHG 78

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118
             GEDG +Q +LE + IPYT  G++ASAL+MDKMR+K +  + G+PV    +V +  +  
Sbjct: 79  RGGEDGTMQGLLEQIGIPYTGCGVMASALTMDKMRTKMLWKAFGLPVAEMEIVTKNNVAE 138

Query: 119 ----DSQHLISPPYVIKPLKGGSSLGIIVIK--KDQSIPLDLLQSSSWNHGDQLLIEQYV 172
               +    +  P ++KP   GSS+G+  +K  +D    +D     +    + +LIE+++
Sbjct: 139 LNPAEVVEKLGLPLMVKPSLEGSSVGLTKVKAVEDLKSAVDF----ALKFDETVLIEEWL 194

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G ELT  V+ +  L    I VP+ +FY YE KY S N+ +  PA +  +  +E+ +L  
Sbjct: 195 AGDELTIPVLDNEVLPAVRI-VPEGEFYDYEAKYLSDNTQYFCPAGLSKEREQELNQLVK 253

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWL-EINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
            A+  +GCRG SR D + D  S+  F L E+N  PGMT  S+FP+ AA  GYSF +L++ 
Sbjct: 254 RAYDVVGCRGWSRIDVMTD--SKGQFRLVEVNTNPGMTSHSLFPKSAAVVGYSFEQLVVR 311

Query: 292 MVE 294
           ++E
Sbjct: 312 ILE 314


>gi|225850175|ref|YP_002730409.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB)
           (D-Ala-D-Ala ligase B) [Persephonella marina EX-H1]
 gi|225644851|gb|ACO03037.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB)
           (D-Ala-D-Ala ligase B) [Persephonella marina EX-H1]
          Length = 303

 Score =  191 bits (485), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 106/301 (35%), Positives = 172/301 (57%), Gaps = 13/301 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--LAHLKPDLAFNVL 58
           +A+L GG SSERE+S+ SGKA  +AL+  GF+ S  D       +  +    PDLAF  L
Sbjct: 6   IALLYGGSSSEREISIKSGKAVENALKKLGFQYSVFDPAEGKDFIKKITDYNPDLAFIAL 65

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
           HG  GEDG +Q +LE L I YT S +  SA+ MDK  +K ++ + G+ V     +     
Sbjct: 66  HGKIGEDGTIQGVLEFLGIKYTGSDLKTSAICMDKSLTKDILKAEGITVPEGYTIQNLDQ 125

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL---DLLQSSSWNHGDQLLIEQYVDGI 175
            +   +  P V+KP   GSS+G+ +++ +  +     ++L+  S     +++IE+++ G 
Sbjct: 126 INDLRLGYPVVVKPNSEGSSIGVKIVENEDQLGKAVGEILKIDS-----KVIIERFIKGR 180

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
           E+T G++    LD+ EI V K  FY Y  KY S  + ++ PA+I   +Y+++Q  A   +
Sbjct: 181 EITVGILNGEPLDIIEIKV-KEGFYDYYNKYISQETEYICPAEIESSLYRKIQNTALKIY 239

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
             +GC+G++R DF+ D    K ++LE+N  PG+T  S+ P+ AA  G +F  L+L ++E 
Sbjct: 240 NILGCKGVARVDFILD--KDKPYFLEVNTIPGLTDHSLIPKAAAVKGINFESLILKIIEG 297

Query: 296 A 296
           A
Sbjct: 298 A 298


>gi|189183856|ref|YP_001937641.1| D-alanine--D-alanine ligase [Orientia tsutsugamushi str. Ikeda]
 gi|189180627|dbj|BAG40407.1| D-alanine-D-alanine ligase [Orientia tsutsugamushi str. Ikeda]
          Length = 324

 Score =  191 bits (484), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 102/300 (34%), Positives = 171/300 (57%), Gaps = 5/300 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL-KPDLAFNVLH 59
           + +L GG+S+EREVSL S     +AL   G++V++IDV + + + L+ + +P   FN L 
Sbjct: 27  VVILYGGMSAEREVSLMSNDNVQAALISNGYQVTRIDVGQDIAVKLSEITRPYTVFNCLV 86

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G +GEDG +  +L ++ IPYTHSG+  SA + DK  +K ++    +    SI +N     
Sbjct: 87  GTYGEDGCIPGLLNIMNIPYTHSGVKTSAAAFDKQIAKTILQCYKIKTPASITINSNDNV 146

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
               I  PYVIKPL+ GSS+G+ ++  +      L +   +  G+++L+EQY+ G EL  
Sbjct: 147 IDDPILRPYVIKPLQQGSSIGVKIVHLEDKF---LFKDYKFQFGNKVLVEQYIKGRELQV 203

Query: 180 GVMGDASLDVTEIAVPKSD-FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
            ++    + + EI + K   FY Y+ KYS   + H++P  +P++   +V  +A   ++  
Sbjct: 204 ALLDGQVVGILEIKMLKDKIFYDYQSKYSPGFAEHIIPPMLPVNTVNQVINIAEKVYKIF 263

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
            CRG  R + +   +  +V+ +E+N  PGMT +S +PE+A Y G SF EL+  ++  A C
Sbjct: 264 DCRGPCRLECILSDIDNEVYVIELNTHPGMTSLSSYPEIAQYYGISFNELVERILITAKC 323


>gi|261823014|ref|YP_003261120.1| D-alanine--D-alanine ligase [Pectobacterium wasabiae WPP163]
 gi|261607027|gb|ACX89513.1| D-alanine/D-alanine ligase [Pectobacterium wasabiae WPP163]
          Length = 306

 Score =  191 bits (484), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 114/307 (37%), Positives = 176/307 (57%), Gaps = 21/307 (6%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD---LAFNV 57
           +AVL+GG S+EREVSL SG+A  + L++AG     +D   +    +  LK D     F  
Sbjct: 5   VAVLLGGTSAEREVSLLSGQAVLAGLKEAGINAHAVD---TRDFPVTKLKEDGFTRVFIA 61

Query: 58  LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF- 116
           LHG  GEDG +Q +LE LE+PYT SG++ASAL+MDK+R+KQV  + G+PV P + ++R  
Sbjct: 62  LHGRGGEDGTLQGVLEFLELPYTGSGVMASALTMDKLRTKQVWQAVGLPVSPYVALDRRH 121

Query: 117 --TMDSQHLISP------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168
                +  L++       P ++KP + GSS+G+  +     +P  L    ++ H D +L+
Sbjct: 122 YSETAANELLAKFTHLGLPLIVKPSREGSSVGMSKVNALSELPAAL--EEAFRHDDDVLV 179

Query: 169 EQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           E+++ G E T  ++GD  L    I  P   FY YE KY S ++ +  P+ +P D  + + 
Sbjct: 180 EKWLSGPEYTVAILGDEVLPSIRIQ-PAGTFYDYEAKYLSDDTQYFCPSGLPDDQEQALA 238

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRE 287
            LA  A++A+ C G  R DF+ D  S   F+ LE+N  PGMT  S+ P  A   G +F +
Sbjct: 239 VLAMAAYRAVDCSGWGRVDFMLD--SDGAFYLLEVNTSPGMTSHSLVPMAARQRGLTFSQ 296

Query: 288 LLLWMVE 294
           L++ ++E
Sbjct: 297 LVVKILE 303


>gi|260886504|ref|ZP_05897767.1| D-alanine--D-alanine ligase [Selenomonas sputigena ATCC 35185]
 gi|330839652|ref|YP_004414232.1| D-alanine/D-alanine ligase [Selenomonas sputigena ATCC 35185]
 gi|260863647|gb|EEX78147.1| D-alanine--D-alanine ligase [Selenomonas sputigena ATCC 35185]
 gi|329747416|gb|AEC00773.1| D-alanine/D-alanine ligase [Selenomonas sputigena ATCC 35185]
          Length = 312

 Score =  191 bits (484), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 120/308 (38%), Positives = 179/308 (58%), Gaps = 17/308 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLA--FNVL 58
           + V+MGG SSE EVS  +G A  SALE  G+ V  +++D       A  K D A  FN L
Sbjct: 6   IVVVMGGPSSEAEVSRRTGAAIVSALESKGYAVEGMELD-PPHFAEAIRKSDCAIVFNAL 64

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
           HG +GEDG++Q  L++L IPYT SG+LA+A++MDK+ SK+V    G+    S   +RF  
Sbjct: 65  HGRYGEDGVLQGTLDMLGIPYTGSGVLAAAVTMDKVMSKRVFLGAGISTPRSETFHRFEF 124

Query: 119 DSQ------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
           D++         S P VIK    GSS+G+ +++K++   L+     ++ + +++L+E+++
Sbjct: 125 DAELPSRIRKAFSLPVVIKASSQGSSIGVAIVEKEEE--LEAALKDAFRYDEEVLVEEFI 182

Query: 173 DGIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
            G ELT  V GDA    +  V EI    S  Y Y  KY+   STH++PA+IPLD+ + VQ
Sbjct: 183 RGKELTVAVWGDAREAQAFPVIEITT-VSGRYDYASKYTKGASTHIIPARIPLDVTERVQ 241

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           +LA  A +A GCRG++R+D +        + +EIN  PGMT  S+ P+     G  F EL
Sbjct: 242 QLAVDAFRACGCRGVARADMMLGE-DMTPYVIEINSMPGMTETSLVPDAGRAMGVEFPEL 300

Query: 289 LLWMVEDA 296
              ++E A
Sbjct: 301 CERILEMA 308


>gi|253689951|ref|YP_003019141.1| D-alanine/D-alanine ligase [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|259645170|sp|C6DEU1|DDL_PECCP RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|251756529|gb|ACT14605.1| D-alanine/D-alanine ligase [Pectobacterium carotovorum subsp.
           carotovorum PC1]
          Length = 306

 Score =  191 bits (484), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 112/304 (36%), Positives = 173/304 (56%), Gaps = 15/304 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL SG+A  + L++AG     +D        L        F  LHG
Sbjct: 5   VAVLLGGTSAEREVSLLSGQAVLAGLKEAGINAHAVDTRDVSVTTLKEEGFTKIFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117
             GEDG +Q +LE L +PYT SG++ASAL+MDK+R+KQV  + G+PV P + ++R     
Sbjct: 65  RGGEDGTLQGVLEFLGLPYTGSGVMASALTMDKLRTKQVWQAVGLPVSPYVALDRRQYSE 124

Query: 118 MDSQHLISP------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
           M +  L++       P ++KP + GSS+G+  +     +P  L    ++ H D +L+E++
Sbjct: 125 MAANALLATFTHLGLPLIVKPSREGSSVGMSKVNTLSELPAAL--EEAFRHDDDILVEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++GD  L    I  P   FY YE KY S ++ +  P+ +  +  +E+  LA
Sbjct: 183 LSGPEYTVAILGDEVLPSIRIQ-PAGTFYDYEAKYLSDDTQYFCPSGLSDEKEQELAGLA 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             A++A+GC G  R DF+ D  S   F+ LE+N  PGMT  S+ P  A   G +F +L++
Sbjct: 242 MAAYRAVGCSGWGRVDFMLD--SDGAFYLLEVNTSPGMTSHSLVPMAAHQRGLTFSQLVV 299

Query: 291 WMVE 294
            ++E
Sbjct: 300 KILE 303


>gi|188532904|ref|YP_001906701.1| D-alanine--D-alanine ligase [Erwinia tasmaniensis Et1/99]
 gi|229485955|sp|B2VD93|DDL_ERWT9 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|188027946|emb|CAO95803.1| D-alanine-D-alanine ligase [Erwinia tasmaniensis Et1/99]
          Length = 306

 Score =  190 bits (483), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 114/303 (37%), Positives = 167/303 (55%), Gaps = 13/303 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+ER+VSL SG A    L++AG     ID+     + L     D AF  LHG
Sbjct: 5   VAVLLGGTSAERDVSLLSGAAVLKGLKEAGIDAHAIDIRDFPAMRLKEEGFDKAFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119
             GEDG +Q +LE L IPYT SG++ASA++MDK+RSK +   CG+PV P + +NR  MD 
Sbjct: 65  RGGEDGTLQGVLEFLAIPYTGSGVMASAITMDKLRSKYLWQGCGLPVSPFVALNRAQMDA 124

Query: 120 --------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                   S   +  P  +KP + GSS+GI  +  +Q+  L      ++   D++L+E +
Sbjct: 125 GLDAQLMTSIDALGLPLFVKPSREGSSVGISRV--NQASELQAALQEAFRFDDEVLVEAF 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T GV+G   L    I    S+FY Y+ KY S  + +  P+ +  D   E++ L 
Sbjct: 183 LSGPEYTVGVIGTDILPSIRIQT-ASEFYDYDAKYLSDETQYFCPSGLSADQEAELRELT 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A +A+GC G  R D +      + + LE+N  PGMT  S+ P  A  AG SF +L+  
Sbjct: 242 IAAWRALGCSGWGRVDVMMGA-DGQFYLLEVNTSPGMTSHSLVPMAANQAGMSFSQLVAR 300

Query: 292 MVE 294
           ++E
Sbjct: 301 ILE 303


>gi|261867482|ref|YP_003255404.1| D-alanine--D-alanine ligase [Aggregatibacter actinomycetemcomitans
           D11S-1]
 gi|261412814|gb|ACX82185.1| D-alanine--D-alanine ligase B [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 309

 Score =  190 bits (483), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 115/303 (37%), Positives = 177/303 (58%), Gaps = 16/303 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SG+A  +AL   G+    ID        L     D  FN+LHG
Sbjct: 10  IAVLLGGTSAEREVSLNSGEAVLNALRKQGYDAHPIDPKTFPVATLKEQGFDRVFNILHG 69

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFT 117
             GEDG +Q +LE + IPYT  G++ SAL+MDKMR+K +  + G+PV    +V   NR  
Sbjct: 70  RGGEDGTMQGLLEQIGIPYTGCGVMTSALTMDKMRTKMLWKAFGLPVAEMEIVTTENRVN 129

Query: 118 MDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS---SWNHGDQLLIEQY 171
           ++ + ++     P ++KP   GSS+G+  +K      +D L+S+   +    + +LIE++
Sbjct: 130 LNPESVVKKLGLPLMVKPSLEGSSVGLTKVK-----AVDELESAVDFALKFDNTVLIEEW 184

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  V+ +  L   +I VP+ +FY Y+ KY S N+ +  PA +  +  +E++RL 
Sbjct: 185 LAGDEFTVPVLDNEVLPSIKI-VPEGEFYDYDAKYISDNTQYFCPAGLSEEREQELRRLV 243

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A+  +GCRG SR D + D    K   +E+N  PGMT  S+FP+ AA  GYSF +L+  
Sbjct: 244 KQAYDVVGCRGWSRIDVMADA-EGKFRLVEVNTNPGMTSHSLFPKSAATVGYSFAQLVEK 302

Query: 292 MVE 294
           ++E
Sbjct: 303 ILE 305


>gi|269216512|ref|ZP_06160366.1| D-alanine--D-alanine ligase [Slackia exigua ATCC 700122]
 gi|269130041|gb|EEZ61123.1| D-alanine--D-alanine ligase [Slackia exigua ATCC 700122]
          Length = 317

 Score =  190 bits (483), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 121/305 (39%), Positives = 173/305 (56%), Gaps = 14/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV-LAHLKPDLAFNVLH 59
           +AVL GG S ERE+SL SG ACA AL + GF V  ID      L  L     D+AF  LH
Sbjct: 12  VAVLYGGTSGEREISLKSGAACAEALAELGFSVQLIDTQDYEQLKRLIEESFDVAFLALH 71

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---- 115
           G  GEDG VQ  LE + +PYT SGILASAL+++K R+K+     G+ V PS+ V R    
Sbjct: 72  GKGGEDGTVQGFLETIGLPYTGSGILASALAVNKARAKESYERAGLLVAPSVTVGRDDPL 131

Query: 116 ---FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
              F  +   +   P V+KP   GSSLG+ +++    +   +  + S +   + +IE ++
Sbjct: 132 DEGFLDECIDICGMPCVVKPTTEGSSLGMTIVRDATDLRKGIETALSVDV--EAMIEGFI 189

Query: 173 DGIELTCGVMGD---ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           +G ELT GVMG+    +L V +I   + +FY++  KY+   S H+ PA +  ++ + VQ 
Sbjct: 190 EGTELTVGVMGNDDPVALPVIQIVPTEDEFYNFHAKYAQGGSRHLCPAPLSPELTESVQE 249

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           LA  AH  +GCRGISR+D + D  +R  + LE N  PGMT  S+ P+ A  AG  F  + 
Sbjct: 250 LAVAAHSVLGCRGISRTDIMVDAENR-CWVLETNTLPGMTGTSLVPDAARVAGMGFSRVC 308

Query: 290 LWMVE 294
             ++E
Sbjct: 309 ERLIE 313


>gi|237736134|ref|ZP_04566615.1| D-alanine-D-alanine ligase [Fusobacterium mortiferum ATCC 9817]
 gi|229421687|gb|EEO36734.1| D-alanine-D-alanine ligase [Fusobacterium mortiferum ATCC 9817]
          Length = 288

 Score =  190 bits (483), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 110/295 (37%), Positives = 164/295 (55%), Gaps = 14/295 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-DRSVGLVLAHLKPDLAFNVLH 59
           +AV MGGISSEREVSL SG A   +L+  G+    +DV ++++       + DLA+   H
Sbjct: 3   IAVFMGGISSEREVSLRSGAAILESLQAQGYDAYGVDVTEKNLVSAFTENEYDLAYIAFH 62

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G +GE+G  Q +L++L  PYT SG + SA++MDK  +K V +S G+    +         
Sbjct: 63  GGYGENGTFQGLLDMLGKPYTGSGAMESAITMDKAYTKAVANSVGIKTAKTYNC------ 116

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
            + +   P V+KP + GSS+GI      + +     ++     G + LIE+ + G ELT 
Sbjct: 117 VEEIKDFPVVVKPSRDGSSVGIYFCNTQEEVR----EALRALEGRKPLIEEMIQGEELTV 172

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
           GV+    L V  I +PK+ FY YE KY++  S H  PAKI    Y +    A   H  IG
Sbjct: 173 GVLNGEGLGVLRI-IPKNKFYDYESKYAAGGSIHEYPAKIDKAAYDKAMENAVKIHNVIG 231

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            +GISRSDF+      +V++LE+N  PGMT  S+ P++    GY+F +L+  MV+
Sbjct: 232 LKGISRSDFMLK--DGEVYFLEVNTCPGMTKTSLIPDLGTLKGYTFDDLVKIMVD 284


>gi|114566682|ref|YP_753836.1| D-alanine--D-alanine ligase [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
 gi|122318278|sp|Q0AXT9|DDL_SYNWW RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|114337617|gb|ABI68465.1| D-alanine--D-alanine ligase [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
          Length = 309

 Score =  190 bits (483), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 122/306 (39%), Positives = 179/306 (58%), Gaps = 17/306 (5%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62
           VLMGG S EREVSL SGKA    L+DAG++V  +D        +    PD+ F  LHG  
Sbjct: 6   VLMGGTSEEREVSLKSGKAVYEGLKDAGYEVEALDFTPETIHRIREYSPDVVFITLHGKN 65

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
           GEDG VQ  LELL IPYT SG+LASA+ M+K+ +K+++S  G+P     ++ +   + + 
Sbjct: 66  GEDGTVQGYLELLGIPYTGSGVLASAVCMNKVITKKLLSYEGLPTADFQVIKKRGFN-RD 124

Query: 123 LISP---------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
           L +P         P V+KP   GSS+G  +++K ++I   L  + S +  +++L+E+++ 
Sbjct: 125 LFNPDLLMEDFGLPLVVKPATQGSSVGTSIVRKRKNIVPALELALSLD--EEILVEKFIA 182

Query: 174 GIELTCGVMGD---ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
           G ELT  V+G     +L V EI VPK+++Y YE KY    S H++PA+I  +  + V+ +
Sbjct: 183 GTELTVTVLGKDNLKTLPVIEI-VPKNEYYDYESKYMPGMSDHLIPARISEEERERVEEI 241

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +  A+ A+GCRG  R D + D      + LEIN  PGMT  S+ P+ A  AG  F ELL 
Sbjct: 242 SCKAYDAVGCRGYGRIDLILD-RGGNPYILEINTLPGMTGTSLVPDAARAAGIKFPELLD 300

Query: 291 WMVEDA 296
             V+ A
Sbjct: 301 LFVKMA 306


>gi|310779638|ref|YP_003967971.1| D-alanine--D-alanine ligase [Ilyobacter polytropus DSM 2926]
 gi|309748961|gb|ADO83623.1| D-alanine--D-alanine ligase [Ilyobacter polytropus DSM 2926]
          Length = 284

 Score =  190 bits (483), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 108/296 (36%), Positives = 171/296 (57%), Gaps = 16/296 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV-LAHLKPDLAFNVLH 59
           +AV MGG+SSERE+SL +GKA   +L   G+    +D+     L      + DLA+  LH
Sbjct: 3   IAVFMGGVSSEREISLRTGKAILESLIRQGYDAYGVDLKEDNLLTAFTENEYDLAYLALH 62

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G FGEDG +QA+L++++ PYT SG+  SA++MDK  +K +    G+ +  S        D
Sbjct: 63  GEFGEDGRIQAVLDIIKKPYTGSGVTPSAIAMDKNMTKIIAEKAGIRIPKSY------RD 116

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN-HGDQLLIEQYVDGIELT 178
              +IS P V+KP   GSS+G+ +        ++ ++ +  N  G  LLIE++V G ELT
Sbjct: 117 KSEIISFPVVVKPTTEGSSVGLYICNS-----IEEVEKAEKNLMGKSLLIEEFVSGEELT 171

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
            GV+    L V +I+ PKS  Y ++ KY+   + +  PAK+   +Y+E    +   HQ +
Sbjct: 172 VGVLNGEPLGVLKIS-PKSGLYDFQSKYTVGMTEYEYPAKVSPKVYEEAMIFSKKIHQEL 230

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           G  G+SRSDF+      K+++LE+N  PGMT  S+ P++A   GY+F +L+  +++
Sbjct: 231 GLSGVSRSDFILK--DDKIYFLEVNTCPGMTETSLVPKLATLKGYTFDDLVKKIIQ 284


>gi|257785158|ref|YP_003180375.1| D-alanine/D-alanine ligase [Atopobium parvulum DSM 20469]
 gi|257473665|gb|ACV51784.1| D-alanine/D-alanine ligase [Atopobium parvulum DSM 20469]
          Length = 319

 Score =  190 bits (483), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 117/308 (37%), Positives = 171/308 (55%), Gaps = 16/308 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGF-KVSQIDV-DRSVGLVLAHLKPDLAFNVL 58
           +AV+ GG S E E+++ SGK CA+AL++AGF  V  +DV ++   + LA    D+ +  +
Sbjct: 11  VAVVSGGWSDEHEIAMESGKQCAAALKEAGFINVDLLDVAEKDFVVALAQGDYDVVYVAM 70

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
           HG FGEDG +Q +LE+L IPYT SG+LASA+  +K  SK +    G+P    I V   T+
Sbjct: 71  HGRFGEDGCIQGLLEILHIPYTFSGVLASAMGTEKELSKLMYRQAGIPTPRGIDVPSGTV 130

Query: 119 DSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
            +   +         P  +KP   GSS G+  +   + +P  L    +   G+++LIE+ 
Sbjct: 131 FTDEQVDKLIEDLGFPMFVKPSGNGSSYGVTRVTSREELPAAL--KLAGEQGERILIEEC 188

Query: 172 VDGIELTCGVMGD---ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           V G E+T  V+G+    +L + EI V   +FYS + KY   +  HV+PA++   +Y   Q
Sbjct: 189 VVGTEITVPVIGNDNPTALPIVEI-VTGDEFYSIKTKYEPASLHHVIPARLEPAVYARAQ 247

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
            LA  AH A+GCRG+SRSDF+       V  LE N  PGMT  S+ P+ A   G  F EL
Sbjct: 248 ELAIKAHNALGCRGVSRSDFIVTEDGEPVV-LETNTIPGMTARSLLPDSARTGGIDFPEL 306

Query: 289 LLWMVEDA 296
               +E A
Sbjct: 307 CTRFIEFA 314


>gi|71281200|ref|YP_271111.1| D-alanine--D-alanine ligase [Colwellia psychrerythraea 34H]
 gi|123630929|sp|Q47VR1|DDL_COLP3 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|71146940|gb|AAZ27413.1| D-alanine--D-alanine ligase [Colwellia psychrerythraea 34H]
          Length = 317

 Score =  190 bits (482), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 113/302 (37%), Positives = 167/302 (55%), Gaps = 14/302 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL+SG+A A  LEDAGF V  ID        L   K D  F  LHG
Sbjct: 17  IAVLYGGNSAEREVSLNSGQAIAKGLEDAGFNVVLIDTKVVPLTDLVSNKIDRVFIALHG 76

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q  LE L+IPYT S +L S+LSMDK+RSKQ+  +CG+P  P  +VN+    +
Sbjct: 77  RGGEDGCLQGALEYLDIPYTGSNVLGSSLSMDKVRSKQIFKACGIPTAPFTVVNKAEFST 136

Query: 121 QHL------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
             L      +    ++KP   GSS+G+   K    +   L+++  ++   Q+L+E ++DG
Sbjct: 137 LSLENILADLGGRVMVKPANEGSSIGMAQAKTIAQLRNALIEAFGFDT--QVLLEAWIDG 194

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
            E T  ++GD +L    +  P+ +FY YE KY S ++ +  P  +      E++ L+  A
Sbjct: 195 PEYTVTILGDKALPAIHMETPR-EFYDYEAKYQSTSTQYHCPCGLNERDENEIKSLSMKA 253

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFW--LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
             A G +G  R D + +       W  LE+N  PGMT  S+ P+ A   G +F EL+  +
Sbjct: 254 FNATGAQGWGRVDIMRNKTGE---WQILEVNTVPGMTETSLVPKAAKVFGLNFSELVTQI 310

Query: 293 VE 294
           ++
Sbjct: 311 LQ 312


>gi|319776619|ref|YP_004139107.1| D-alanine:D-alanine ligase [Haemophilus influenzae F3047]
 gi|317451210|emb|CBY87443.1| D-alanine:D-alanine ligase [Haemophilus influenzae F3047]
          Length = 306

 Score =  190 bits (482), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 120/304 (39%), Positives = 183/304 (60%), Gaps = 18/304 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD---LAFNV 57
           +AVL+GG S+EREVSL+SGKA   AL   G+    ID        +A+LK D    AFN+
Sbjct: 8   IAVLLGGTSAEREVSLNSGKAVLEALLKQGYNAYPIDPKE---YNVANLKKDGFNRAFNI 64

Query: 58  LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117
           LHG  GEDG +Q +LE + +PYT  G++ASAL+MDKMR+K +  + G+PV    +V R T
Sbjct: 65  LHGRGGEDGTMQGLLEQIGLPYTGCGVMASALTMDKMRTKMLWKAFGLPVADMKVVTRET 124

Query: 118 ---MDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
              +D Q +++    P ++KP   GSS+G+  +K  + +   +  +  ++  + +LIE++
Sbjct: 125 FSELDPQAVVAKLGLPLMVKPSLEGSSVGLTKVKAVEELKSAVEYALKFD--NTILIEEW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G ELT  V+ +  L    I VP+ +FY YE KY S N+ +  PA +  +  +E+  L 
Sbjct: 183 LAGDELTVPVLDNQVLPAIRI-VPEGEFYDYEAKYISDNTQYFCPAGLTPEREQELAILV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWL-EINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             A+ A+GCRG SR D + D  ++  F L E+N  PGMT  S+FP+ AA  G SF +L++
Sbjct: 242 KRAYDAVGCRGWSRIDVMCD--AKGNFRLVEVNTNPGMTSHSLFPKSAATVGISFEQLVV 299

Query: 291 WMVE 294
            ++E
Sbjct: 300 KILE 303


>gi|145633130|ref|ZP_01788862.1| D-alanylalanine synthetase [Haemophilus influenzae 3655]
 gi|145635591|ref|ZP_01791289.1| D-alanylalanine synthetase [Haemophilus influenzae PittAA]
 gi|229844905|ref|ZP_04465043.1| D-alanine--D-alanine ligase [Haemophilus influenzae 6P18H1]
 gi|144986356|gb|EDJ92935.1| D-alanylalanine synthetase [Haemophilus influenzae 3655]
 gi|145267153|gb|EDK07159.1| D-alanylalanine synthetase [Haemophilus influenzae PittAA]
 gi|229812286|gb|EEP47977.1| D-alanine--D-alanine ligase [Haemophilus influenzae 6P18H1]
          Length = 306

 Score =  190 bits (482), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 119/304 (39%), Positives = 182/304 (59%), Gaps = 18/304 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD---LAFNV 57
           +AVL+GG S+EREVS +SGKA   AL   G+    ID        +A+LK D    AFN+
Sbjct: 8   IAVLLGGTSAEREVSFNSGKAVLEALLKQGYNAHPIDPKE---YNVANLKKDGFNRAFNI 64

Query: 58  LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117
           LHG  GEDG +Q +LE + +PYT  G++ASAL+MDKMR+K +  + G+PV    +V R T
Sbjct: 65  LHGRGGEDGTMQGLLEQIGLPYTGCGVMASALTMDKMRTKMLWKAFGLPVADMKVVTRET 124

Query: 118 ---MDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
              +D Q +++    P ++KP   GSS+G+  +K  + +   +  +  ++  + +LIE++
Sbjct: 125 FAELDPQAVVAKLGLPLMVKPSLEGSSVGLTKVKAVEELKSAVEYALKFD--NTILIEEW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G ELT  V+ +  L    I VP+ +FY YE KY S N+ +  PA +  +  +E+  L 
Sbjct: 183 LAGDELTVSVLDNQVLPAIRI-VPEGEFYDYEAKYISDNTQYFCPAGLTPEREQELAILV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWL-EINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             A+ A+GCRG SR D + D  ++  F L E+N  PGMT  S+FP+ AA  G SF +L++
Sbjct: 242 KRAYDAVGCRGWSRIDVMCD--AKGNFRLVEVNTNPGMTSHSLFPKSAATVGISFEQLVV 299

Query: 291 WMVE 294
            ++E
Sbjct: 300 KILE 303


>gi|238898843|ref|YP_002924525.1| D-alanine-D-alanine ligase B, affects cell division [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
 gi|259645168|sp|C4K734|DDL_HAMD5 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|229466603|gb|ACQ68377.1| D-alanine-D-alanine ligase B, affects cell division [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
          Length = 320

 Score =  189 bits (481), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 119/314 (37%), Positives = 172/314 (54%), Gaps = 31/314 (9%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG SSER++SL SG A  + L +AG     ID    +   L       AF  LHG
Sbjct: 5   VAVLLGGTSSERQISLQSGHAVVAGLREAGIDARPIDTKNFLVTELKEKGFTKAFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR----- 115
             GEDG +QA+LE L+IPYT SG++ASAL+MDK RSK +    G+PV P + +NR     
Sbjct: 65  RDGEDGHLQAVLEFLKIPYTGSGVMASALAMDKHRSKMIFQGAGLPVSPYVALNREQIWP 124

Query: 116 -FTMD-----------SQHLISP------PYVIKPLKGGSSLGIIVIKK-DQSIPLDLLQ 156
             T +           S  LI        P ++KP + GSS G+  ++  DQ   LD   
Sbjct: 125 NVTQNTSNDLLLNNRISNKLIKNINQLGLPLIVKPSREGSSFGMTKVEHLDQ---LDDAL 181

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD-FYSYELKYSSLNSTHVL 215
             +W++ +++L+E++  G ELT  ++GD  L    I V  SD FY Y+ KY S  + +  
Sbjct: 182 KKAWHYDEEILVEKWHFGTELTVAILGDTVLPSIRIQV--SDIFYDYQAKYVSDKTQYFC 239

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275
           P+ +  +  K++  L+  A++A+GC G  R D + D      + +EIN  PGMT  S+FP
Sbjct: 240 PSGLKQEQEKQLATLSMNAYRALGCDGWGRVDVMLDDEGH-FYLMEINTAPGMTDHSLFP 298

Query: 276 EMAAYAGYSFRELL 289
             A  AG+SF EL+
Sbjct: 299 MAARQAGFSFSELV 312


>gi|116751515|ref|YP_848202.1| D-alanine--D-alanine ligase [Syntrophobacter fumaroxidans MPOB]
 gi|189083063|sp|A0LQR5|DDL_SYNFM RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|116700579|gb|ABK19767.1| D-alanine--D-alanine ligase [Syntrophobacter fumaroxidans MPOB]
          Length = 311

 Score =  189 bits (480), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 120/305 (39%), Positives = 178/305 (58%), Gaps = 17/305 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL-KPDLAFNVLH 59
           +A+L GG S+EREVSL SG+   +AL+   + V + D    +  + A   K D+A  +LH
Sbjct: 8   VALLSGGASAEREVSLKSGEQVFNALDKQRYLVLRYDPAHDLTRLAADAEKIDVALIILH 67

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT-- 117
           G  GEDG +Q +LE L IPY  SG+L SA++M+K+ SKQ+    G+PV P ++ +R    
Sbjct: 68  GRMGEDGTIQGLLESLGIPYQGSGVLGSAVAMNKILSKQLYIHAGLPVAPHLVADRREPP 127

Query: 118 -MDS-QHLISPPYVIKPLKGGSSLGI-IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
            +D+    +  P V+KP   GSS+G+ IV  +DQ   L     + W +  + LIE+YV G
Sbjct: 128 DLDTVADRLGLPVVVKPEHEGSSIGLSIVRNRDQ---LAAAVETGWQYDRRCLIEKYVHG 184

Query: 175 IELTCGVMGD---ASLDVTEIAVPKS--DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           IE+T GV+G+    +L + EI +P    +F+ Y+ KY+   S  + PA++   I  + Q 
Sbjct: 185 IEITGGVLGNDHLQALPLIEI-IPGEAYEFFDYKAKYTPGASREICPARLSDTITAKAQE 243

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
            A  AHQA+ C+G SR+D +       +F LE N  PGMT  S+FP+ AA AG SF  LL
Sbjct: 244 YARKAHQALCCKGYSRTDMIVS--GNDIFILETNTIPGMTATSLFPQAAAVAGISFSALL 301

Query: 290 LWMVE 294
             ++E
Sbjct: 302 DRLIE 306


>gi|310765080|gb|ADP10030.1| D-alanine--D-alanine ligase [Erwinia sp. Ejp617]
          Length = 306

 Score =  189 bits (480), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 112/303 (36%), Positives = 169/303 (55%), Gaps = 13/303 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+ER+VSL SG A    L++AG     +D+       L     D AF  LHG
Sbjct: 5   VAVLLGGTSAERDVSLLSGAAVLKGLQEAGIDAHAVDIRDFPVTRLNEEGFDKAFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119
             GEDG +Q +LELL+IPYT SG++ASA++MDK+RSK +   CG+PV P + +NR  MD 
Sbjct: 65  RGGEDGTLQGVLELLDIPYTGSGVMASAITMDKLRSKYLWQGCGLPVSPFVALNRVQMDA 124

Query: 120 --------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                   S + +  P  +KP + GSS+GI  +  +Q+  L      ++   +++L+E +
Sbjct: 125 GLDAQLMTSINALGLPLFVKPSREGSSVGISRV--NQASELQAALEEAFRFDNEVLVEAF 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T GV+G   L    I    S+FY Y+ KY S  + +  P+ +  D   E++ L 
Sbjct: 183 LSGPEYTVGVLGSDILPSIRIQT-TSEFYDYDAKYISDETQYFCPSGLSADQETELRELT 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A +A+GC G  R D +        + LE+N  PGMT  S+ P  A  AG +F +L++ 
Sbjct: 242 IAAWRALGCSGWGRVDVMMGA-DGHFYLLEVNTSPGMTSHSLVPMAAKQAGMTFSQLVVR 300

Query: 292 MVE 294
           ++E
Sbjct: 301 ILE 303


>gi|329124132|ref|ZP_08252679.1| D-alanine-D-alanine ligase B [Haemophilus aegyptius ATCC 11116]
 gi|327467557|gb|EGF13055.1| D-alanine-D-alanine ligase B [Haemophilus aegyptius ATCC 11116]
          Length = 306

 Score =  189 bits (480), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 119/304 (39%), Positives = 183/304 (60%), Gaps = 18/304 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD---LAFNV 57
           +AVL+GGIS+EREVSL+SG A   AL + G+    ID        +A+LK D     FN+
Sbjct: 8   IAVLLGGISAEREVSLNSGNAVLEALLNQGYDAHPIDPKE---YNVANLKKDGFHRVFNI 64

Query: 58  LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117
           LHG  GEDG +Q +LE + +PYT  G++ASAL+MDKMR+K +  + G+PV    +V R T
Sbjct: 65  LHGRGGEDGTMQGLLEQIGLPYTGCGVMASALTMDKMRTKMLWKAFGLPVADMEVVTRET 124

Query: 118 ---MDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
              +D Q +++    P ++KP   GSS+G+  +K  + +   +  +  ++  + +LIE++
Sbjct: 125 FSELDPQSVVAKLGLPLMVKPSLEGSSVGLTKVKAVEELKSAVEYALKFD--NTILIEEW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           +DG ELT  V+ +  L    I VP+ +FY YE KY S N+ +  PA +  +  + +  L 
Sbjct: 183 LDGDELTVPVLDNQVLPAIRI-VPEGEFYDYEAKYISDNTQYFCPAGLTPEREQALAILV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWL-EINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             A+ A+GCRG SR D + D  ++  F L E+N  PGMT  S+FP+ AA  G SF +L++
Sbjct: 242 KRAYDAVGCRGWSRIDVMCD--AKGNFRLVEVNTNPGMTSHSLFPKSAATVGISFEQLVV 299

Query: 291 WMVE 294
            ++E
Sbjct: 300 KILE 303


>gi|15602009|ref|NP_245081.1| D-alanine--D-alanine ligase [Pasteurella multocida subsp. multocida
           str. Pm70]
 gi|13431429|sp|P57819|DDL_PASMU RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|12720361|gb|AAK02228.1| DdlB [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 309

 Score =  189 bits (480), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 115/303 (37%), Positives = 172/303 (56%), Gaps = 16/303 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL SG+A  +AL  AGF    ID        L     D  FN+LHG
Sbjct: 10  IAVLLGGTSAEREVSLDSGQAVLNALLSAGFDAHPIDPKTFPVATLKEQGFDRVFNILHG 69

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LE + IPYT  G++ SAL+MDKMR+K +  + G+PV    +V +  +  
Sbjct: 70  RGGEDGTMQGLLEQIGIPYTGCGVMTSALTMDKMRTKMLWKAFGLPVAEMEIVTKANVGE 129

Query: 121 QH------LISPPYVIKPLKGGSSLGIIVIKK--DQSIPLDLLQSSSWNHGDQLLIEQYV 172
            +       +  P ++KP   GSS+G+  +K+  D    +D     +  + D +LIE+++
Sbjct: 130 LNPSAVVEKLGLPVMVKPSLEGSSVGLTKVKRVEDLKSAVDF----ALKYDDTVLIEEWL 185

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G E T  V+ +  L    I VP+ +FY YE KY S N+ +  P+ +  +   E+++L  
Sbjct: 186 SGAEFTVPVLDNEVLPSIRI-VPEGEFYDYEAKYISDNTQYFCPSGLSAEREDELKQLVK 244

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWL-EINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
            A+  +GCRG SR D + D      F L E+N  PGMT  S+FP+ AA  GYSF +L++ 
Sbjct: 245 QAYDVVGCRGWSRIDVMLD--GNDAFRLVEVNTNPGMTSHSLFPKSAATVGYSFEQLVVK 302

Query: 292 MVE 294
           ++E
Sbjct: 303 ILE 305


>gi|301169880|emb|CBW29484.1| D-alanine:D-alanine ligase [Haemophilus influenzae 10810]
          Length = 306

 Score =  189 bits (480), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 119/304 (39%), Positives = 183/304 (60%), Gaps = 18/304 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD---LAFNV 57
           +AVL+GG S+EREVSL+SGKA   AL   G+    ID        +A+LK D    AFN+
Sbjct: 8   IAVLLGGTSAEREVSLNSGKAVLEALLKQGYNAHPIDPKE---YNVANLKKDGFNRAFNI 64

Query: 58  LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117
           LHG  GEDG +Q +LE + +PYT  G++ASAL+MDKMR+K +  + G+PV    +V R T
Sbjct: 65  LHGRRGEDGTMQGLLEQIGLPYTGCGVMASALTMDKMRTKMLWKAFGLPVADMKVVTRET 124

Query: 118 ---MDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
              ++ Q +++    P ++KP   GSS+G+  +K  + +   +  +  ++  + +LIE++
Sbjct: 125 FSELNPQAVVAKLGLPLMVKPSLEGSSVGLTKVKAVEELKSAVEYALKFD--NTILIEEW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G ELT  V+ +  L    I VP+ +FY YE KY S N+ +  PA +  +  +E+  L 
Sbjct: 183 LAGDELTVPVLDNQVLPAIRI-VPEGEFYDYEAKYISDNTQYFCPAGLTPEREQELAILV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWL-EINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             A+ A+GCRG SR D + D  ++  F L E+N  PGMT  S+FP+ AA  G SF +L++
Sbjct: 242 KRAYDAVGCRGWSRIDVMCD--AKGNFRLVEVNTNPGMTSHSLFPKSAATVGISFEQLVV 299

Query: 291 WMVE 294
            ++E
Sbjct: 300 KILE 303


>gi|145627890|ref|ZP_01783691.1| D-alanylalanine synthetase [Haemophilus influenzae 22.1-21]
 gi|145639340|ref|ZP_01794946.1| D-alanylalanine synthetase [Haemophilus influenzae PittII]
 gi|144979665|gb|EDJ89324.1| D-alanylalanine synthetase [Haemophilus influenzae 22.1-21]
 gi|145271643|gb|EDK11554.1| D-alanylalanine synthetase [Haemophilus influenzae PittII]
          Length = 330

 Score =  189 bits (479), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 119/304 (39%), Positives = 182/304 (59%), Gaps = 18/304 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD---LAFNV 57
           +AVL+GG S+EREVS +SGKA   AL   G+    ID        +A+LK D    AFN+
Sbjct: 32  IAVLLGGTSAEREVSFNSGKAVLEALLKQGYNAHPIDPKE---YNVANLKKDGFNRAFNI 88

Query: 58  LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117
           LHG  GEDG +Q +LE + +PYT  G++ASAL+MDKMR+K +  + G+PV    +V R T
Sbjct: 89  LHGRGGEDGTMQGLLEQIGLPYTGCGVMASALTMDKMRTKMLWKAFGLPVADMKVVTRET 148

Query: 118 ---MDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
              +D Q +++    P ++KP   GSS+G+  +K  + +   +  +  ++  + +LIE++
Sbjct: 149 FSELDPQAVVAKLGLPLMVKPSLEGSSVGLTKVKAVEELKSAVEYALKFD--NTILIEEW 206

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G ELT  V+ +  L    I VP+ +FY YE KY S N+ +  PA +  +  +E+  L 
Sbjct: 207 LAGDELTVPVLDNQVLPAIRI-VPEGEFYDYEAKYISDNTQYFCPAGLTPEREQELAILV 265

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWL-EINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             A+ A+GCRG SR D + D  ++  F L E+N  PGMT  S+FP+ AA  G SF +L++
Sbjct: 266 KRAYDAVGCRGWSRIDVMCD--AKGNFRLVEVNTNPGMTSHSLFPKSAATVGISFEQLVV 323

Query: 291 WMVE 294
            ++E
Sbjct: 324 KILE 327


>gi|309751214|gb|ADO81198.1| D-alanine--D-alanine ligase [Haemophilus influenzae R2866]
          Length = 306

 Score =  189 bits (479), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 119/304 (39%), Positives = 182/304 (59%), Gaps = 18/304 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD---LAFNV 57
           +AVL+GG S+EREVS +SGKA   AL   G+    ID        +A+LK D    AFN+
Sbjct: 8   IAVLLGGTSAEREVSFNSGKAVLEALLKQGYNAHPIDPKE---YNVANLKKDGFNRAFNI 64

Query: 58  LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117
           LHG  GEDG +Q +LE + +PYT  G++ASAL+MDKMR+K +  + G+PV    +V R T
Sbjct: 65  LHGRGGEDGTMQGLLEQIGLPYTGCGVMASALTMDKMRTKMLWKAFGLPVADMKVVTRET 124

Query: 118 ---MDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
              +D Q +++    P ++KP   GSS+G+  +K  + +   +  +  ++  + +LIE++
Sbjct: 125 FSELDPQAVVAKLGLPLMVKPSLEGSSVGLTKVKAVEELKSAVEYALKFD--NTILIEEW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G ELT  V+ +  L    I VP+ +FY YE KY S N+ +  PA +  +  +E+  L 
Sbjct: 183 LAGDELTVPVLDNQVLPAIRI-VPEGEFYDYEAKYISDNTQYFCPAGLTPEREQELAILV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWL-EINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             A+ A+GCRG SR D + D  ++  F L E+N  PGMT  S+FP+ AA  G SF +L++
Sbjct: 242 KRAYDAVGCRGWSRIDVMCD--AKGNFRLVEVNTNPGMTSHSLFPKSAATVGISFEQLVV 299

Query: 291 WMVE 294
            ++E
Sbjct: 300 KILE 303


>gi|16273066|ref|NP_439298.1| D-alanine--D-alanine ligase [Haemophilus influenzae Rd KW20]
 gi|260580224|ref|ZP_05848054.1| D-alanylalanine synthetase [Haemophilus influenzae RdAW]
 gi|1169257|sp|P44405|DDL_HAEIN RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|1574696|gb|AAC22795.1| D-alanine--D-alanine ligase (ddlB) [Haemophilus influenzae Rd KW20]
 gi|260093508|gb|EEW77441.1| D-alanylalanine synthetase [Haemophilus influenzae RdAW]
          Length = 306

 Score =  189 bits (479), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 119/304 (39%), Positives = 182/304 (59%), Gaps = 18/304 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD---LAFNV 57
           +AVL+GG S+EREVSL+SGKA   AL   G+    ID        +A+LK D    AFN+
Sbjct: 8   IAVLLGGTSAEREVSLNSGKAVLEALLKQGYNAHPIDPKE---YNVANLKKDGFNRAFNI 64

Query: 58  LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117
           LHG  GEDG +Q +LE + +PYT  G++ASAL+MDKMR+K +  + G+PV    +V R T
Sbjct: 65  LHGRGGEDGTMQGLLEQIGLPYTGCGVMASALTMDKMRTKMLWKAFGLPVADMKVVTRET 124

Query: 118 ---MDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
              +D Q +++    P ++KP   GSS+G+  +K  + +   +  +  ++  + +LIE++
Sbjct: 125 FSELDPQAVVAKLGLPLMVKPSLEGSSVGLTKVKAVEELKSAVEYALKFD--NTILIEEW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G ELT  V+ +  L    I VP+ +FY YE KY S N+ +  PA +  +  + +  L 
Sbjct: 183 LAGDELTVPVLDNQVLPAIRI-VPEGEFYDYEAKYISDNTQYFCPAGLTPEREQALSTLV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWL-EINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             A+ A+GCRG SR D + D  ++  F L E+N  PGMT  S+FP+ AA  G SF +L++
Sbjct: 242 KRAYDAVGCRGWSRIDVMCD--AKGNFRLVEVNTNPGMTSHSLFPKSAATVGISFEQLVV 299

Query: 291 WMVE 294
            ++E
Sbjct: 300 KILE 303


>gi|293391360|ref|ZP_06635694.1| D-alanine--D-alanine ligase B [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290951894|gb|EFE02013.1| D-alanine--D-alanine ligase B [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 309

 Score =  189 bits (479), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 114/303 (37%), Positives = 176/303 (58%), Gaps = 16/303 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SG+A  +AL   G+    ID        L     D  FN+LHG
Sbjct: 10  IAVLLGGTSAEREVSLNSGEAVLNALRKQGYDAHPIDPKIFPVATLKEQGFDRVFNILHG 69

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFT 117
             GEDG +Q +LE + +PYT  G++ SAL+MDKMR+K +  + G+PV    +V   NR  
Sbjct: 70  RGGEDGTMQGLLEQIGVPYTGCGVMTSALTMDKMRTKMLWKAFGLPVAEMEIVTTENRVN 129

Query: 118 MDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS---SWNHGDQLLIEQY 171
           ++ + ++     P ++KP   GSS+G+  +K      +D L+S+   +    + +LIE++
Sbjct: 130 LNPESVVKKLGLPLMVKPSLEGSSVGLTKVKS-----VDELESAVDFALKFDNTVLIEEW 184

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  V+ +  L   +I VP+ +FY Y+ KY S N+ +  PA +  +  +E+ RL 
Sbjct: 185 LAGDEFTVPVLDNEVLPSIKI-VPEGEFYDYDAKYISDNTQYFCPAGLSEEREQELHRLV 243

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A+  +GCRG SR D + D    K   +E+N  PGMT  S+FP+ AA  GYSF +L+  
Sbjct: 244 KQAYDVVGCRGWSRIDVMADA-EGKFRLVEVNTNPGMTSHSLFPKSAATVGYSFAQLVEK 302

Query: 292 MVE 294
           ++E
Sbjct: 303 ILE 305


>gi|303233440|ref|ZP_07320108.1| D-ala D-ala ligase N-terminal domain protein [Atopobium vaginae
           PB189-T1-4]
 gi|302480448|gb|EFL43540.1| D-ala D-ala ligase N-terminal domain protein [Atopobium vaginae
           PB189-T1-4]
          Length = 326

 Score =  189 bits (479), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 118/306 (38%), Positives = 167/306 (54%), Gaps = 16/306 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFK-VSQIDV-DRSVGLVLAHLKPDLAFNVL 58
           +AVL GG S ER++S+ SG  C  AL++AGF+ V   DV D S    LA  + D+ F  +
Sbjct: 11  VAVLAGGWSDERDISMQSGTECTKALQEAGFRHVELFDVKDLSFVSRLAAREFDVVFVAM 70

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV----- 113
           HG FGEDG +Q +LE L IPYT SG+LASALSM K  +K V  S  +P    I V     
Sbjct: 71  HGKFGEDGCIQGLLETLHIPYTGSGVLASALSMHKNMAKFVYRSANIPAPRDIYVPSHQV 130

Query: 114 --NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
             +       H ++ PYV+KP   GSS G+ ++    ++   +  +   N G  +L+E+ 
Sbjct: 131 IDDELVQHITHDLTLPYVVKPTDNGSSFGVHLVSDAATLASAIASARGKNSG--VLVEER 188

Query: 172 VDGIELTCGVMGDA---SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           + G E+T  V+G     +L V EI   ++  Y  + K       HV+PA +    Y   Q
Sbjct: 189 IVGTEITVPVIGTKNPHALPVVEIKY-EAPIYDLDAKNEPAALHHVIPANLSPAAYSRAQ 247

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
            LA  AH+A+GC G+SRSDF+ D      + LE N  PGMT  S+ P+ A + G SF EL
Sbjct: 248 ELAVRAHRALGCTGVSRSDFIVDATGEP-YILETNNIPGMTEHSLIPDAARHDGMSFSEL 306

Query: 289 LLWMVE 294
             +++E
Sbjct: 307 CTYLIE 312


>gi|145637108|ref|ZP_01792771.1| D-alanylalanine synthetase [Haemophilus influenzae PittHH]
 gi|145269762|gb|EDK09702.1| D-alanylalanine synthetase [Haemophilus influenzae PittHH]
          Length = 306

 Score =  189 bits (479), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 119/304 (39%), Positives = 182/304 (59%), Gaps = 18/304 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD---LAFNV 57
           +AVL+GG S+EREVSL+SGKA   AL   G+    ID        +A+LK D    AFN+
Sbjct: 8   IAVLLGGTSAEREVSLNSGKAVLEALLKQGYNAYPIDPKE---YNVANLKKDGFNRAFNI 64

Query: 58  LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117
           LHG  GEDG +Q +LE + +PYT  G++ASAL+MDKMR+K +  + G+PV    +V R T
Sbjct: 65  LHGRGGEDGTMQGLLEQIGLPYTGCGVMASALTMDKMRTKMLWKAFGLPVADMKVVTRET 124

Query: 118 ---MDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
              +D Q +++    P ++KP   GSS+G+  +K  + +   +  +  +++   +LIE++
Sbjct: 125 FSELDPQAVVAKLGLPLMVKPSLEGSSVGLTKVKAVEELKSAVEYALKFDN--TILIEEW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G ELT  V+ +  L    I VP+ +FY YE KY S N+ +  PA +  +  + +  L 
Sbjct: 183 LAGDELTVPVLDNQVLPAIRI-VPEGEFYDYEAKYISDNTQYFCPAGLTPEREQALSTLV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWL-EINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             A+ A+GCRG SR D + D  ++  F L E+N  PGMT  S+FP+ AA  G SF +L++
Sbjct: 242 KRAYDAVGCRGWSRIDVMCD--AKGNFRLVEVNTNPGMTSHSLFPKSAATVGISFEQLVV 299

Query: 291 WMVE 294
            ++E
Sbjct: 300 KILE 303


>gi|68249689|ref|YP_248801.1| D-alanine--D-alanine ligase [Haemophilus influenzae 86-028NP]
 gi|145630240|ref|ZP_01786022.1| D-alanylalanine synthetase [Haemophilus influenzae R3021]
 gi|229846171|ref|ZP_04466283.1| D-alanine--D-alanine ligase [Haemophilus influenzae 7P49H1]
 gi|260581811|ref|ZP_05849607.1| D-alanylalanine synthetase [Haemophilus influenzae NT127]
 gi|81335882|sp|Q4QLF6|DDL_HAEI8 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|68057888|gb|AAX88141.1| D-alanine--D-alanine ligase [Haemophilus influenzae 86-028NP]
 gi|144984521|gb|EDJ91944.1| D-alanylalanine synthetase [Haemophilus influenzae R3021]
 gi|229811175|gb|EEP46892.1| D-alanine--D-alanine ligase [Haemophilus influenzae 7P49H1]
 gi|260095004|gb|EEW78896.1| D-alanylalanine synthetase [Haemophilus influenzae NT127]
 gi|309973393|gb|ADO96594.1| D-alanine--D-alanine ligase [Haemophilus influenzae R2846]
          Length = 306

 Score =  188 bits (478), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 119/304 (39%), Positives = 182/304 (59%), Gaps = 18/304 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD---LAFNV 57
           +AVL+GG S+EREVS +SGKA   AL   G+    ID        +A+LK D    AFN+
Sbjct: 8   IAVLLGGTSAEREVSFNSGKAVLEALLKQGYNAHPIDPKE---YNVANLKKDGFNRAFNI 64

Query: 58  LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117
           LHG  GEDG +Q +LE + +PYT  G++ASAL+MDKMR+K +  + G+PV    +V R T
Sbjct: 65  LHGRGGEDGTMQGLLEQIGLPYTGCGVMASALTMDKMRTKMLWKAFGLPVADMKVVTRET 124

Query: 118 ---MDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
              +D Q +++    P ++KP   GSS+G+  +K  + +   +  +  ++  + +LIE++
Sbjct: 125 FSELDPQAVVAKLGLPLMVKPSLEGSSVGLTKVKAVEELKSAVEYALKFD--NTILIEEW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G ELT  V+ +  L    I VP+ +FY YE KY S N+ +  PA +  +  +E+  L 
Sbjct: 183 LAGDELTVPVLDNQVLPAIRI-VPEGEFYDYEAKYISDNTQYFCPAGLTPEREQELAILV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWL-EINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             A+ A+GCRG SR D + D  ++  F L E+N  PGMT  S+FP+ AA  G SF +L++
Sbjct: 242 KRAYDALGCRGWSRIDVMCD--AKGNFRLVEVNTNPGMTSHSLFPKSAATVGISFEQLVV 299

Query: 291 WMVE 294
            ++E
Sbjct: 300 KILE 303


>gi|190572803|ref|YP_001970648.1| D-alanine--D-alanine ligase [Stenotrophomonas maltophilia K279a]
 gi|190010725|emb|CAQ44334.1| putative D-alanine--D-alanine ligase B [Stenotrophomonas
           maltophilia K279a]
          Length = 320

 Score =  188 bits (478), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 119/297 (40%), Positives = 169/297 (56%), Gaps = 7/297 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG SSEREVSL SG+    AL+  G     +D    +   LA    D  FN+LHG
Sbjct: 20  VAVLLGGTSSEREVSLDSGRNVLEALQSRGVDAFAVDGIPELAKALAAGGIDRVFNILHG 79

Query: 61  NFG--EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
           + G  EDG+VQ +++   +PYT S +L SALSMDK+R+KQV  S G+P      V+   +
Sbjct: 80  HNGGGEDGIVQGLMDAFGVPYTGSDVLGSALSMDKIRTKQVWLSLGLPTPQYRKVDASNV 139

Query: 119 DS-QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            +    +  P V+KP   GSS+GI  +  D    LD   + +  +  QLL+EQ V G EL
Sbjct: 140 HALAAELGLPVVVKPANEGSSVGISRVTDDAG--LDEAVALAARYDGQLLMEQMVVGDEL 197

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           T  ++GD +L    I VPK  +Y Y  KY + ++ ++ P     D  +E++R+A  A +A
Sbjct: 198 TVAILGDVALPSIRI-VPKGQWYDYNAKYIAEDTQYLCPGLDGGD-EEEIRRIALAAFRA 255

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            GCRG  R D + D  S + F LE+N  PGMT  S+ P+ A  AG SF EL+  ++E
Sbjct: 256 AGCRGWGRVDVMRDRSSGRFFLLEVNTAPGMTSHSLVPKAAGQAGISFDELVWRVLE 312


>gi|212712759|ref|ZP_03320887.1| hypothetical protein PROVALCAL_03856 [Providencia alcalifaciens DSM
           30120]
 gi|212684675|gb|EEB44203.1| hypothetical protein PROVALCAL_03856 [Providencia alcalifaciens DSM
           30120]
          Length = 306

 Score =  188 bits (477), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 117/307 (38%), Positives = 166/307 (54%), Gaps = 15/307 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL SG A  + L  AG     ID      + L     D AF  LHG
Sbjct: 5   IAVLFGGTSAEREVSLQSGNAVLAGLRQAGIDAHPIDTQDFPVVTLKEAGFDKAFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR----- 115
             GEDG +Q +LE + +PYT SG++ASALSMDK+R+KQ+    G+ V P I +NR     
Sbjct: 65  RGGEDGTIQGMLEFMGLPYTGSGVMASALSMDKLRTKQLWQGAGLSVSPYISLNRQKYTN 124

Query: 116 -----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                     +HL   P ++KP   GSS+G+  +     +P  +    ++   D LLIE+
Sbjct: 125 IKKEQLAQQVKHL-GLPLIVKPSLEGSSVGMSKVDSLDELPEAI--ELAFQFDDTLLIEK 181

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
           ++ G E T  V+GD  L    I  P   FY YE KY S  + +  P+ +  D+  ++  +
Sbjct: 182 WLSGPEYTVAVLGDEVLPSIRIQ-PPGIFYDYEAKYLSDETQYFCPSGLTNDLEAKLADM 240

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A  A+QA+GCRG  R D + D    + + LE+N  PGMT  S+ P  A  AG  F +L++
Sbjct: 241 AMKAYQAVGCRGWGRVDVMQDS-DGEFYLLEVNTSPGMTSHSLVPMAARQAGMDFSQLVV 299

Query: 291 WMVEDAS 297
            ++E AS
Sbjct: 300 RILELAS 306


>gi|148828300|ref|YP_001293053.1| D-alanine--D-alanine ligase [Haemophilus influenzae PittGG]
 gi|166198486|sp|A5UIR4|DDL_HAEIG RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|148719542|gb|ABR00670.1| D-alanylalanine synthetase [Haemophilus influenzae PittGG]
          Length = 306

 Score =  188 bits (477), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 118/304 (38%), Positives = 182/304 (59%), Gaps = 18/304 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD---LAFNV 57
           +AVL+GG S+EREVS +SG+A   AL   G+    ID        +A+LK D    AFN+
Sbjct: 8   IAVLLGGTSAEREVSFNSGRAVLEALLKQGYNAHPIDPKE---YNVANLKKDGFNRAFNI 64

Query: 58  LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117
           LHG  GEDG +Q +LE + +PYT  G++ASAL+MDKMR+K +  + G+PV    +V R T
Sbjct: 65  LHGRGGEDGTMQGLLEQIGLPYTGCGVMASALTMDKMRTKMLWKAFGLPVADMKVVTRET 124

Query: 118 ---MDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
              +D Q +++    P ++KP   GSS+G+  +K  + +   +  +  ++  + +LIE++
Sbjct: 125 FSELDPQAVVAKLGLPLMVKPSLEGSSVGLTKVKAVEELKSAVEYALKFD--NTILIEEW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G ELT  V+ +  L    I VP+ +FY YE KY S N+ +  PA +  +  +E+  L 
Sbjct: 183 LAGDELTVPVLDNQVLPAIRI-VPEGEFYDYEAKYISDNTQYFCPAGLTPEREQELAILV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWL-EINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             A+ A+GCRG SR D + D  ++  F L E+N  PGMT  S+FP+ AA  G SF +L++
Sbjct: 242 KRAYDAVGCRGWSRIDVMCD--AKGNFRLVEVNTNPGMTSHSLFPKSAATVGISFEQLVV 299

Query: 291 WMVE 294
            ++E
Sbjct: 300 KILE 303


>gi|251772202|gb|EES52772.1| D-alanine--D-alanine ligase [Leptospirillum ferrodiazotrophum]
          Length = 323

 Score =  187 bits (476), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 111/302 (36%), Positives = 172/302 (56%), Gaps = 10/302 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S E E+S  SGKA A AL  AGF+V + + DRS+   L    PD+AF   HG
Sbjct: 14  VAVLAGGDSDEAEISRVSGKAVAEALRKAGFEVGEFEADRSLAKTLTDFSPDVAFLATHG 73

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF--TM 118
             GE+G +Q  LE ++IPYT SG+LASA+ M KMRS+ +    G+ V P    +R   + 
Sbjct: 74  GGGENGTLQGFLETMKIPYTGSGVLASAIGMSKMRSRALFRERGLAV-PLTYAHRTEESF 132

Query: 119 DSQHL-ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
           +  ++   PPY++KP   GSS+G+  + + + +   + ++  ++H   +L+EQ + G E+
Sbjct: 133 NPGYISFDPPYMVKPEAAGSSIGVKRVLRREDLADAVSEAGRYSH--WVLVEQLIPGREI 190

Query: 178 TCGVMGDASLDVTEIAVPKSD-FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
              ++    L   EI   K++ FY+Y  KY    S H+ PA +  D   E+ R+   A +
Sbjct: 191 QSAILSGRYLGAIEIIPDKAEPFYTYASKYVPGGSRHISPAPLTPDESSELSRITIEACR 250

Query: 237 AIGCRGISRSDFLFDPLSRKVF-WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
            +  RG  R D + +     VF  LEIN  PG+TP S+ PE+A++ G SF +L++ ++  
Sbjct: 251 VLDVRGACRLDTILN--DEGVFVILEINTLPGLTPTSLLPEIASHEGLSFTDLIIELIAT 308

Query: 296 AS 297
           AS
Sbjct: 309 AS 310


>gi|262197342|ref|YP_003268551.1| D-alanine/D-alanine ligase [Haliangium ochraceum DSM 14365]
 gi|262080689|gb|ACY16658.1| D-alanine/D-alanine ligase [Haliangium ochraceum DSM 14365]
          Length = 333

 Score =  187 bits (476), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 102/293 (34%), Positives = 172/293 (58%), Gaps = 8/293 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VLMGG+SSE+ +SL++G A  ++LED G+ V +I VDR V + L     D+AF  LHG
Sbjct: 6   IGVLMGGLSSEKAISLATGDAVMASLEDRGYDVQKIFVDRDVDMALRQANIDVAFIALHG 65

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF---- 116
            FGEDG +Q +LE + IPYT SG++ASAL+M+K +SK++     +P     ++NR     
Sbjct: 66  RFGEDGCIQGLLETMGIPYTGSGVMASALAMNKAKSKEMFRLHNLPTPSYYVLNRVDEHD 125

Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
            +        P V+KPL  GSS+G+ +    + +     ++  ++H   +++E++V+G+E
Sbjct: 126 VLGCHGDFGYPVVVKPLTEGSSVGVSLASTPEELLAACERAFVFDH--SVVVERFVEGME 183

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           ++  V+ D +L   E+A  +   + Y  KY+S  + +++P ++  + Y+ V   A  AH 
Sbjct: 184 VSVAVLEDRALGAVEVA-SEGPLFDYGAKYTSGATEYIIPPRLSPERYRGVLTQAVRAHL 242

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           A+ C G SR D +  P   + + LE+N  P + P S+ P++A  AG  F +L+
Sbjct: 243 ALDCSGASRVDMIVSPTGNE-YILEVNTLPALAPRSLLPKIAVAAGMDFDDLV 294


>gi|255002846|ref|ZP_05277810.1| D-alanine--D-alanine ligase (ddlB) [Anaplasma marginale str. Puerto
           Rico]
          Length = 333

 Score =  187 bits (475), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 111/298 (37%), Positives = 174/298 (58%), Gaps = 6/298 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S EREVSL+ GK  A AL   G+  + +D+++SVG +LA + PDL +N LHG
Sbjct: 14  VAVLCGGSSPEREVSLAGGKRVADALGRLGYNATVLDLNKSVGQLLA-MAPDLVYNALHG 72

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-SILVNRFTMD 119
             GEDG V  +L++L +  THS + AS++ MDK+ +K V+ S G+      +L     + 
Sbjct: 73  VQGEDGCVSGLLDILGLACTHSHVAASSVGMDKVLTKHVLKSLGIDFPKFDVLTKEELLS 132

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
           ++ ++  P+VIKP++GGS++G+  I   +S  LDL  + +    D++++E+YV G E+  
Sbjct: 133 AKEVLPYPFVIKPVRGGSTIGVHAIFS-KSEYLDL-SAHADTLEDRMIVEEYVSGQEVQT 190

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
            V    ++   E+   +   YSY+ KY      H+ PA +P DIY      A   HQ +G
Sbjct: 191 AVFLGRAIGTMELLF-EGRIYSYDAKYVEGLCEHIFPANLPYDIYNLTLEWALKLHQCLG 249

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPE-MAAYAGYSFRELLLWMVEDA 296
           C+ +SR DF +D  ++ +  LEIN  PGMT  S  PE +    G +F  ++  +V+DA
Sbjct: 250 CKTLSRVDFRYDVANKALKLLEINTHPGMTVSSTLPEVLWLRCGLNFDHVVDLIVQDA 307


>gi|308185661|ref|YP_003929792.1| D-alanine:D-alanine ligase B [Pantoea vagans C9-1]
 gi|308056171|gb|ADO08343.1| D-alanine:D-alanine ligase B [Pantoea vagans C9-1]
          Length = 306

 Score =  187 bits (475), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 116/303 (38%), Positives = 167/303 (55%), Gaps = 13/303 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG S+EREVSL+SG+A  + L + G     +D      L L       AF  LHG
Sbjct: 5   VAVLMGGTSAEREVSLNSGQAVVAGLREMGINAHGVDTRDVSVLTLKEQGFTKAFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119
             GEDG +QA+LE L++PYT SG++ASA++MDK+R+K +    G+P    + + R   D 
Sbjct: 65  RGGEDGTMQAVLEFLQLPYTGSGVMASAVTMDKLRTKLLWQGRGLPSGKFVWLTRQQFDA 124

Query: 120 -----SQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                S   I+    P  +KP   GSS+GI  +    ++P  L    ++ H D +L+E +
Sbjct: 125 GLDAESNAAIAALGLPLFVKPACEGSSVGISRVNDLSALPAAL--DMAFKHDDDVLVEAF 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++GD  L   EI    S+FY YE KY S ++ +V PA +  +   E+Q+L 
Sbjct: 183 LSGAEYTVAIVGDRILPSIEIK-SASEFYDYEAKYISDDTQYVCPADLSAEREAELQQLV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A +A+GCRG  R D + D   R    LE N  PGMT  S+ P  A  AG SF +L+  
Sbjct: 242 LAAWRALGCRGWGRVDVMTDGEGRFQL-LEANTSPGMTSHSLVPMAAKQAGMSFPQLVAH 300

Query: 292 MVE 294
           ++E
Sbjct: 301 ILE 303


>gi|145641272|ref|ZP_01796852.1| D-alanylalanine synthetase [Haemophilus influenzae R3021]
 gi|145274109|gb|EDK13975.1| D-alanylalanine synthetase [Haemophilus influenzae 22.4-21]
          Length = 297

 Score =  187 bits (474), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 118/302 (39%), Positives = 181/302 (59%), Gaps = 18/302 (5%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD---LAFNVLH 59
           +L+GG S+EREVSL+SGKA   AL   G+    ID        +A+LK D    AFN+LH
Sbjct: 1   MLLGGTSAEREVSLNSGKAVLEALLKQGYNAYPIDPKE---YNVANLKKDGFNRAFNILH 57

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT-- 117
           G  GEDG +Q +LE + +PYT  G++ASAL+MDKMR+K +  + G+PV    +V R T  
Sbjct: 58  GRGGEDGTIQGLLEQIGLPYTGCGVMASALTMDKMRTKMLWKAFGLPVADMKVVTRETFS 117

Query: 118 -MDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
            +D Q +++    P ++KP   GSS+G+  +K  + +   +  +  +++   +LIE+++ 
Sbjct: 118 ELDPQAVVAKLGLPLMVKPSLEGSSVGLTKVKAVEELKSAVEYALKFDN--TILIEEWLA 175

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           G ELT  V+ +  L    I VP+ +FY YE KY S N+ +  PA +  +  +E+  L   
Sbjct: 176 GDELTVPVLDNQVLPAIRI-VPEGEFYDYEAKYISDNTQYFCPAGLTPEREQELAILVKR 234

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWL-EINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           A+ A+GCRG SR D + D  ++  F L E+N  PGMT  S+FP+ AA  G SF +L++ +
Sbjct: 235 AYDAVGCRGWSRIDVMCD--AKGNFRLVEVNTNPGMTSHSLFPKSAATVGISFEQLVVKI 292

Query: 293 VE 294
           +E
Sbjct: 293 LE 294


>gi|221195258|ref|ZP_03568314.1| D-alanine--D-alanine ligase B [Atopobium rimae ATCC 49626]
 gi|221185161|gb|EEE17552.1| D-alanine--D-alanine ligase B [Atopobium rimae ATCC 49626]
          Length = 324

 Score =  187 bits (474), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 124/309 (40%), Positives = 177/309 (57%), Gaps = 22/309 (7%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGF-KVSQIDVDRSVGL-VLAHLKPDLAFNVLHG 60
           VL GG S E E+SL SG+    AL+ AGF KV  +D+     +  L     D+AF  +HG
Sbjct: 13  VLAGGWSDEHEISLQSGEEVKKALKQAGFEKVELLDIALPGAIEKLVKSSYDVAFVAMHG 72

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN---RFT 117
           ++GEDG +Q +LE+L IPYT SG+LASA+  +K  SK +    G+PV   I V+   +FT
Sbjct: 73  HYGEDGCIQGLLEILHIPYTFSGVLASAMGTEKEVSKLMYKQAGIPVPKGIDVSAGTKFT 132

Query: 118 MDS-QHLISP---PYVIKPLKGGSSLGII-VIKKDQSIPLDLLQS--SSWNHGDQLLIEQ 170
            +  + +++    P  +KP   GSS G+  V  KDQ     LLQ+   +   GD++LIE+
Sbjct: 133 DEEIEQVVTDLGLPIFVKPAANGSSFGVTRVTNKDQ-----LLQAIEDAGAQGDRVLIEE 187

Query: 171 YVDGIELTCGVMGD---ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227
            V G E+T  V+G+    +L + EI V + +FYS E+K    +  H+ PA++  D+Y   
Sbjct: 188 CVVGTEITVPVIGNDHPTALPIVEI-VFEDEFYSIEVKAEPASLHHITPARLAPDVYARA 246

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287
           Q LA  AH+A+GCRG+SRSDF+       V  LE N+ PGMT  S+ P+ A   G  F E
Sbjct: 247 QELAICAHKALGCRGVSRSDFIVKADGTPVI-LETNMIPGMTERSLIPDSARTDGIPFSE 305

Query: 288 LLLWMVEDA 296
           L    +E A
Sbjct: 306 LCTRFIEYA 314


>gi|291279001|ref|YP_003495836.1| D-alanine-D-alanine ligase [Deferribacter desulfuricans SSM1]
 gi|290753703|dbj|BAI80080.1| D-alanine-D-alanine ligase [Deferribacter desulfuricans SSM1]
          Length = 291

 Score =  187 bits (474), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 102/294 (34%), Positives = 168/294 (57%), Gaps = 9/294 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG+SSEREVSL +G+A   AL++ G+    IDVD +V   +   +PD  F  LHG
Sbjct: 5   IAVLCGGLSSEREVSLKTGEAVKQALDNLGYDAFLIDVDNNVDKKIRETQPDYCFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG +Q +LE+L IPY  +G+ ASA++ DK  +K +V S G+   P   +     D 
Sbjct: 65  KYGEDGSIQGLLEVLGIPYNGAGVAASAIAYDKHLTKVLVQSVGIKT-PDYYLCENDKDI 123

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           + L   P V+KP + GS++GI ++K          ++  ++   ++LIE++++G ELT G
Sbjct: 124 RFL---PAVVKPAREGSTIGISIVKSKDEFSKAFSEAKKYDS--RVLIERFIEGKELTVG 178

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           ++ +  L    I  P   FY YE KY+   + ++    + +D   ++  ++      IGC
Sbjct: 179 IINNEVLPTIYIK-PIKGFYDYESKYTKGMTEYIFETGLNVDETDKLNNISLKVADLIGC 237

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             + R D+++D   ++ F LE+N  PGMT  S+ P+ A  AGY F +L+  +++
Sbjct: 238 SSLCRIDYIYD--GKEFFLLEVNTIPGMTETSLLPKAAKKAGYDFEKLIDKIIK 289


>gi|148826247|ref|YP_001291000.1| D-alanine--D-alanine ligase [Haemophilus influenzae PittEE]
 gi|190359137|sp|A5UCW6|DDL_HAEIE RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|148716407|gb|ABQ98617.1| D-alanine--D-alanine ligase [Haemophilus influenzae PittEE]
          Length = 297

 Score =  186 bits (473), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 117/302 (38%), Positives = 180/302 (59%), Gaps = 18/302 (5%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD---LAFNVLH 59
           +L+GG S+EREVS +SGKA   AL   G+    ID        +A+LK D    AFN+LH
Sbjct: 1   MLLGGTSAEREVSFNSGKAVLEALLKQGYNAHPIDPKE---YNVANLKKDGFNRAFNILH 57

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT-- 117
           G  GEDG +Q +LE + +PYT  G++ASAL+MDKMR+K +  + G+PV    +V R T  
Sbjct: 58  GRGGEDGTMQGLLEQIGLPYTGCGVMASALTMDKMRTKMLWKAFGLPVADMKVVTRETFA 117

Query: 118 -MDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
            +D Q +++    P ++KP   GSS+G+  +K  + +   +  +  ++  + +LIE+++ 
Sbjct: 118 ELDPQAVVAKLGLPLMVKPSLEGSSVGLTKVKAVEELKSAVEYALKFD--NTILIEEWLA 175

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           G ELT  V+ +  L    I VP+ +FY YE KY S N+ +  PA +  +  +E+  L   
Sbjct: 176 GDELTVSVLDNQVLPAIRI-VPEGEFYDYEAKYISDNTQYFCPAGLTPEREQELAILVKR 234

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWL-EINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           A+ A+GCRG SR D + D  ++  F L E+N  PGMT  S+FP+ AA  G SF +L++ +
Sbjct: 235 AYDAVGCRGWSRIDVMCD--AKGNFRLVEVNTNPGMTSHSLFPKSAATVGISFEQLVVKI 292

Query: 293 VE 294
           +E
Sbjct: 293 LE 294


>gi|255003979|ref|ZP_05278780.1| D-alanine--D-alanine ligase (ddlB) [Anaplasma marginale str.
           Virginia]
          Length = 333

 Score =  186 bits (473), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 111/298 (37%), Positives = 174/298 (58%), Gaps = 6/298 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S EREVSL+ GK  A AL   G+  + +D+++SVG +LA + PDL +N LHG
Sbjct: 14  VAVLCGGSSPEREVSLAGGKRVADALGRLGYNATVLDLNKSVGQLLA-MAPDLVYNALHG 72

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-SILVNRFTMD 119
             GEDG V  +L++L +  THS + AS++ MDK+ +K V+ S G+      +L     + 
Sbjct: 73  VQGEDGCVSGLLDILGLACTHSHVAASSVGMDKVLTKHVLKSLGIDFPKFDVLTKEELLS 132

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
           ++ ++  P+VIKP++GGS++G+  I   +S  LDL  + +    D++++E+YV G E+  
Sbjct: 133 AKEVLPYPFVIKPVRGGSTIGVHAIFS-KSEYLDL-SAHADTLEDRMIVEEYVSGQEVQT 190

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
            V    ++   E+   +   YSY+ KY      H+ PA +P DIY      A   HQ +G
Sbjct: 191 AVFLGRAIGTMELLF-EGRIYSYDAKYVEGLCEHIFPANLPYDIYNLTLEWALKLHQCLG 249

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPE-MAAYAGYSFRELLLWMVEDA 296
           C+ +SR DF +D  ++ +  LEIN  PGMT  S  PE +    G +F  ++  +V+DA
Sbjct: 250 CKTLSRVDFRYDVANKVLKLLEINTHPGMTVSSTLPEVLWLRCGLNFDHVVDLIVQDA 307


>gi|121535915|ref|ZP_01667711.1| D-alanine--D-alanine ligase [Thermosinus carboxydivorans Nor1]
 gi|121305486|gb|EAX46432.1| D-alanine--D-alanine ligase [Thermosinus carboxydivorans Nor1]
          Length = 316

 Score =  186 bits (472), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 109/300 (36%), Positives = 176/300 (58%), Gaps = 18/300 (6%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD---LAFNV 57
           + VLMGG S+EREVSL++GKA   AL + G+    ID+D      L  L+ +     FN 
Sbjct: 6   IGVLMGGPSTEREVSLNTGKAILGALREKGYDAVGIDLDPP--RFLEQLRENGVTFVFNA 63

Query: 58  LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117
           +HG FGEDG +Q  L+LL IPYT SG+LASAL+MDK  SK++  + G+P  P   +    
Sbjct: 64  IHGKFGEDGALQGALDLLGIPYTGSGVLASALAMDKSISKRLFQAAGIP-TPRAEIYTKA 122

Query: 118 MDSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
              ++L++        P V+K    GSS+G+++++++  +   +++  ++ + D +++E 
Sbjct: 123 DAKRNLVAEIMQKFPIPLVVKAAAQGSSIGVVIVEEESQVQAAVVE--AFRYSDCIVVEN 180

Query: 171 YVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           ++ G ELT  ++G   L+V  I   VP S  Y Y  KY+   + +++PA+I  +  + V+
Sbjct: 181 FIKGKELTVAILGGEPLEVLPIIEIVPHSGRYDYHSKYTKGTTDYIIPARIDDNAAERVR 240

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           ++A  A   +GCRG++R D + D      + LE+N  PGMT  S+ P+ AA AG SF +L
Sbjct: 241 QVAVAAFNLLGCRGVARVDIMLDD-DNNPYVLEVNTIPGMTATSLVPKAAAAAGISFADL 299


>gi|330445163|ref|ZP_08308815.1| D-alanine--D-alanine ligase [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328489354|dbj|GAA03312.1| D-alanine--D-alanine ligase [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 303

 Score =  186 bits (472), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 112/302 (37%), Positives = 181/302 (59%), Gaps = 12/302 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL-KPDLAFNVLH 59
           + VL GG SSEREVSL SG    SA++  G  V Q+D   S+ L + +L K D  F  LH
Sbjct: 3   VGVLCGGRSSEREVSLKSGAQIVSAVKALGHDVIQLD-PCSIDLSMLNLYKLDKVFIALH 61

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G  GE G +QA+L++L+IPY  SG+LASA+S++K+++K+V S+ G+   P +LV + T  
Sbjct: 62  GGLGESGHIQALLDILQIPYVGSGVLASAISLNKLKTKEVWSANGLLTAPWVLVRKSTSQ 121

Query: 120 SQHL-----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
           S  L     I+ P VIKPL  G S+G+     ++ +   LL  +++ + D++L+EQ++ G
Sbjct: 122 SDILKACGEITFPVVIKPLNQGCSIGVAKADNEEQLWQALL--AAFEYDDEVLVEQFIVG 179

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
            E TC V+ D +L V +I      F+ +  K+ + ++T+  P+ +     K +Q++   A
Sbjct: 180 REYTCAVLNDEALPVVQIC--SDTFFDWSAKFGTQSATYHCPSDLSEQEEKSMQQVVKAA 237

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           ++A+GCRG  R D L    +  V+ +E+N  PGMT  S++P  AA AG ++  L+  +++
Sbjct: 238 YKALGCRGWGRVDVLLTE-NNDVYLIEMNTIPGMTERSVYPMAAAQAGLTYEALIAKLLD 296

Query: 295 DA 296
            A
Sbjct: 297 KA 298


>gi|134299650|ref|YP_001113146.1| D-alanine--D-alanine ligase [Desulfotomaculum reducens MI-1]
 gi|190359127|sp|A4J5G8|DDL_DESRM RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|134052350|gb|ABO50321.1| D-alanine--D-alanine ligase [Desulfotomaculum reducens MI-1]
          Length = 312

 Score =  186 bits (472), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 108/305 (35%), Positives = 177/305 (58%), Gaps = 25/305 (8%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFK-VSQIDVDRSVGLVLAHLKPDLAFNVLH 59
           + VL GG S+EREVSL SG+A   AL  AG+  V +IDV   +   L   +  +AF  LH
Sbjct: 5   IGVLCGGRSAEREVSLRSGEAVYQALMAAGYNDVVKIDVGYDLVEQLKGNEIQVAFLALH 64

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G +GEDG +Q +LE+L+IPYT SG+LASAL+++K+ +K++    G+P     ++ +  ++
Sbjct: 65  GKYGEDGTIQGLLEMLDIPYTGSGVLASALAINKIATKKIFKMEGIPTPAFSVITKKEVE 124

Query: 120 SQHL----------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            + L          +  P V+K    GS++GI  +   + +   +   S+  +   +L+E
Sbjct: 125 DKSLQEAALRAIKEVGVPAVVKANTQGSTIGITFVHVKEKMAEAI--ESALKYDQDVLVE 182

Query: 170 QYVDGIELTCGVMGDAS------LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           Q+V G E+T  V+G+ S      +++T +    +  Y Y+ KY+   S H++P ++P DI
Sbjct: 183 QFVAGTEVTASVLGNNSPEALPLIEITSV----TGVYDYQSKYTPGMSDHIIPPRLPQDI 238

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283
            ++++ LA  +  ++GCRG+ R DF+      + + LE+N  PGMT  S+FP+ A YAG 
Sbjct: 239 QEKIKELAIKSFLSLGCRGLGRIDFIIR--DNQPYALEVNTLPGMTATSLFPDAANYAGI 296

Query: 284 SFREL 288
           SF EL
Sbjct: 297 SFPEL 301


>gi|194364382|ref|YP_002026992.1| D-alanine--D-alanine ligase [Stenotrophomonas maltophilia R551-3]
 gi|194347186|gb|ACF50309.1| D-alanine/D-alanine ligase [Stenotrophomonas maltophilia R551-3]
          Length = 320

 Score =  186 bits (471), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 120/300 (40%), Positives = 170/300 (56%), Gaps = 13/300 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG SSEREVSL SG+    AL+  G     +D   ++   LA    D  FN+LHG
Sbjct: 20  VAVLLGGSSSEREVSLDSGRNVLEALQSRGVDAFAVDGIPALAKALAAGGIDRVFNILHG 79

Query: 61  NFG--EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
           + G  EDG+VQ +++   +PYT S +L SALSMDK+R+KQV  S G+P  P     + T 
Sbjct: 80  HNGGGEDGIVQGLMDAFGVPYTGSNVLGSALSMDKIRTKQVWLSLGLP-TPQY--RKVTA 136

Query: 119 DSQHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
           +  H     +  P V+KP   GSS+GI  +  D    LD   + +  +  QLL+EQ V G
Sbjct: 137 EDVHANAAALGLPVVVKPANEGSSVGISRVTDDAG--LDEAVALAARYDGQLLMEQMVIG 194

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
            ELT  ++GD +L    I VPK  +Y Y  KY + ++ ++ P  +  D   E++R+A  A
Sbjct: 195 DELTVAILGDVALPSIRI-VPKGQWYDYNAKYIAEDTQYLCPG-LDGDAEDEIRRIALAA 252

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            +A GCRG  R D + D  S + F LE+N  PGMT  S+ P+ A  AG  F EL+  ++E
Sbjct: 253 FRAAGCRGWGRVDVMRDRDSGRFFLLEVNTAPGMTSHSLVPKAARQAGIGFEELVWRVLE 312


>gi|294635011|ref|ZP_06713528.1| D-alanine--D-alanine ligase B [Edwardsiella tarda ATCC 23685]
 gi|291091610|gb|EFE24171.1| D-alanine--D-alanine ligase B [Edwardsiella tarda ATCC 23685]
          Length = 307

 Score =  186 bits (471), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 114/303 (37%), Positives = 168/303 (55%), Gaps = 13/303 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL SG+A  + L+ AG     +D        L        F  LHG
Sbjct: 6   VAVLLGGTSAEREVSLESGQAVVNGLKQAGIDAYPVDTRAFPATQLRDAGFTRVFIALHG 65

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR----- 115
             GEDG +Q +LE L++PYT SG++ASAL+MDK+RSKQV  + G+PV P + ++R     
Sbjct: 66  RGGEDGTLQGVLEFLQLPYTGSGVMASALTMDKLRSKQVWQAAGLPVAPYVAISREQFDE 125

Query: 116 -FTMDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
             TMD+   I+    P ++KP + GSS+G+   K ++    D     +  H D++LIE+ 
Sbjct: 126 GLTMDTLREINDLGLPLIVKPSREGSSVGM--SKVNEPCEFDPALVEALRHDDEILIEKC 183

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T   +GD  L    I     +FY YE KY S  + +  P+ +  +  + +  L 
Sbjct: 184 LVGPEYTVAFIGDEILPSIRIKA-AGEFYDYEAKYLSDKTEYFCPSGLSAEQEQSLATLV 242

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A+QA+GC G  R D + D  S +   LE+N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 243 KRAYQALGCSGWGRVDVMQDE-SGRFCLLEVNTAPGMTSHSLVPMAARQAGMSFSQLVVR 301

Query: 292 MVE 294
           ++E
Sbjct: 302 ILE 304


>gi|237739358|ref|ZP_04569839.1| D-alanine-D-alanine ligase [Fusobacterium sp. 2_1_31]
 gi|229422966|gb|EEO38013.1| D-alanine-D-alanine ligase [Fusobacterium sp. 2_1_31]
          Length = 287

 Score =  186 bits (471), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 117/303 (38%), Positives = 174/303 (57%), Gaps = 31/303 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD--LAFNVL 58
           +AV MGG SSE+E+SL SG+A   +L+  G+    + +D +   V A L+ D  LA+ VL
Sbjct: 3   IAVFMGGTSSEKEISLRSGEAVLESLQRQGYDAYGVVLDEN-NQVTAFLENDYDLAYLVL 61

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL----VN 114
           HG  GE+G +QA+L++L   YT SG+LASAL+MDK ++KQ+  S G+ V  S      + 
Sbjct: 62  HGGNGENGKIQAVLDILGKKYTGSGVLASALTMDKNKTKQIAESIGIRVPKSYRDLDSIE 121

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVI--KKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
           RF          P +IKP+  GSS G+ +   K++    L  L+          +IE Y+
Sbjct: 122 RF----------PVIIKPVDEGSSKGLFLCNNKEEAGEALKKLRKP--------IIEDYI 163

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSD-FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
            G ELT GV+   +L V +I +P++D  Y Y+ KY+   S H  PAKI    YKE  ++A
Sbjct: 164 VGEELTVGVLNGKALGVLKI-IPQADVLYDYDSKYAKGGSIHEFPAKIEDKSYKEAMKIA 222

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
              H+    +GISRSDF+      K+++LE+N  PGMT  S+ P++A   GY+F +++  
Sbjct: 223 ERIHKEFKMKGISRSDFILS--EGKLYFLEVNSSPGMTKTSLIPDLATLQGYTFDDVVRL 280

Query: 292 MVE 294
            VE
Sbjct: 281 TVE 283


>gi|225023730|ref|ZP_03712922.1| hypothetical protein EIKCOROL_00594 [Eikenella corrodens ATCC
           23834]
 gi|224943612|gb|EEG24821.1| hypothetical protein EIKCOROL_00594 [Eikenella corrodens ATCC
           23834]
          Length = 320

 Score =  186 bits (471), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 115/300 (38%), Positives = 167/300 (55%), Gaps = 6/300 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG SSEREVSL SG A  +AL+  G    + D      L L      +AFNVLHG
Sbjct: 22  VAVLNGGFSSEREVSLDSGAAVLAALQSRGIDAHRFDPKEQDILQLKAQGFQVAFNVLHG 81

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119
            +GEDG VQA+L+ + IPYT  G+ ASAL MDK R K +  + G+PV P   V     D 
Sbjct: 82  TYGEDGTVQALLDSIGIPYTGCGMAASALGMDKYRCKLIWQALGLPV-PDFAVLHDDTDF 140

Query: 120 --SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
              +  +  P  +KP   GSS+G++ +K+   +P    +    +   +++ E++VDG E 
Sbjct: 141 AAVEAELGLPMFVKPAAEGSSVGVVKVKQPGELPKVYRELRERHLHGEIIAERFVDGGEY 200

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC V+G  +L    I +P ++FY Y+ KY   ++ +  P+ +      E++RLA    +A
Sbjct: 201 TCAVLGQQALPSIRI-IPATEFYDYDAKYFRDDTVYQCPSDLDAAGEAEIRRLAKAGFEA 259

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           IG RG  R DFL    S K++ LEIN  PGMT  S+ P+ AA  G  F +L + ++  A+
Sbjct: 260 IGGRGWGRVDFLRSQ-SGKLYLLEINTVPGMTSHSLVPKAAAQTGLDFADLCVEVLSHAT 318


>gi|256827807|ref|YP_003151766.1| D-alanine--D-alanine ligase [Cryptobacterium curtum DSM 15641]
 gi|256583950|gb|ACU95084.1| D-alanine--D-alanine ligase [Cryptobacterium curtum DSM 15641]
          Length = 313

 Score =  186 bits (471), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 113/303 (37%), Positives = 177/303 (58%), Gaps = 13/303 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP-DLAFNVLH 59
           +A+L GG S ERE+SL+SG+  A AL+ AGF+V  +D  +   L     +P D+AF  LH
Sbjct: 10  VALLAGGTSDEREISLASGRGAADALQQAGFQVKVLDPAKKDDLAQLVSQPFDVAFLCLH 69

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF-TM 118
           G  GEDG +Q  LE + +PY   GI +SA +MDK+++K      G+P   SI ++R  ++
Sbjct: 70  GRGGEDGAIQGFLETIGLPYIGPGIWSSATAMDKVKAKVFYREFGIPTPQSITLHRNESV 129

Query: 119 DSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175
           D+  +I+      V+KP   GS+LG+ +I+   +  LD   + ++   + +LIE ++ G 
Sbjct: 130 DAATVIAQLGNHLVVKPATEGSALGVSIIEGPSA--LDRALTEAFKLDNAVLIETFMAGT 187

Query: 176 ELTCGVMGD---ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
           ELT  V+G+   ++L V EI     +FY +E KY++  S H+ PA++  +    VQ++A 
Sbjct: 188 ELTVAVIGNENASALPVIEIVPQLGEFYDFESKYAADGSQHICPARLTDEQTTAVQQVAV 247

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
            AH+A+GC G+SRSD +    +    W LE N  PGMT  S+ P+    AG SF +L   
Sbjct: 248 QAHKALGCCGVSRSDVIL--AADGTPWVLETNTIPGMTATSLLPDAGRAAGMSFPQLCTR 305

Query: 292 MVE 294
           ++E
Sbjct: 306 LIE 308


>gi|262066312|ref|ZP_06025924.1| D-alanine--D-alanine ligase [Fusobacterium periodonticum ATCC
           33693]
 gi|291380007|gb|EFE87525.1| D-alanine--D-alanine ligase [Fusobacterium periodonticum ATCC
           33693]
          Length = 287

 Score =  186 bits (471), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 112/297 (37%), Positives = 170/297 (57%), Gaps = 19/297 (6%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD--LAFNVL 58
           +AV MGG SSE+E+SL SG+A   +L+  G+    + +D +   V A L  D  LA+ VL
Sbjct: 3   IAVFMGGTSSEKEISLKSGEAVLESLQRQGYDAYGVVLDET-NQVTAFLDNDYDLAYLVL 61

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
           HG  GE+G +QA+L++L   YT SG+LASAL+MDK ++KQ+  + G+ V  S        
Sbjct: 62  HGGNGENGKIQAVLDILGKKYTGSGVLASALTMDKNKTKQIAENIGIRVPKSY------A 115

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           D + +   P +IKP+  GSS G+ +    +          +     + +IE Y+ G ELT
Sbjct: 116 DLESIERFPVIIKPVDEGSSKGLFLCNNKEE------AGEALKKVKKPIIEDYIVGEELT 169

Query: 179 CGVMGDASLDVTEIAVPKSD-FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
            GV+   +L V +I +P++D  Y Y+ KY+   S H  PAKI    YKE  ++A   H+ 
Sbjct: 170 VGVLNGKALGVLKI-IPQADVLYDYDSKYAKGGSIHEFPAKIEDKSYKEAMKIAEKIHKE 228

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
              +GISRSDF+      K+++LE+N  PGMT  S+ P++A   GY+F +++   VE
Sbjct: 229 FKMKGISRSDFILS--EGKLYFLEVNSSPGMTKTSLIPDLATLQGYTFDDVVRLTVE 283


>gi|86604840|ref|YP_473603.1| D-alanine--D-alanine ligase B [Synechococcus sp. JA-3-3Ab]
 gi|123508098|sp|Q2JXY2|DDL_SYNJA RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|86553382|gb|ABC98340.1| D-alanine--D-alanine ligase B [Synechococcus sp. JA-3-3Ab]
          Length = 323

 Score =  185 bits (470), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 114/307 (37%), Positives = 171/307 (55%), Gaps = 18/307 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP---DLAFNV 57
           + +L GG S+ER+VSL +GKAC  ALED G +   ID +  + L L   +    D  +  
Sbjct: 3   IVILAGGRSAERQVSLVTGKACKRALEDLGHRAKLIDPEEDLPLRLWQERQAGCDFVWIA 62

Query: 58  LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117
           LHG  GEDG+VQ +LE L +PY  SG LASAL+MDK+ SKQ+  + G+P  P  LV    
Sbjct: 63  LHGPGGEDGVVQGMLEWLGLPYQGSGPLASALAMDKLVSKQIFRAEGIPT-PEWLVWD-- 119

Query: 118 MDSQHL--------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            ++Q L        +  P V+KP   GS++GI + + + S+   L  +SS +   ++ +E
Sbjct: 120 -EAQPLSWAECVARLGSPLVVKPSNSGSTVGISLARDEVSLAQGLALASSVS--SRVFLE 176

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           +Y+ G E+T  ++    L   EI   + DFY YE KY+   S H++P  +        + 
Sbjct: 177 RYIPGKEITLSILSGQVLPAIEIIPAQGDFYDYEAKYAPGGSRHLIPCSLSAAGLARCEA 236

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
               A++ +GC G++R D   D      + LE+N  PGMTP S+ PE AA  G++F EL+
Sbjct: 237 AGLRAYRVLGCEGLARVDLRVD-ADENPWVLEVNTLPGMTPTSLCPEAAAALGWTFTELV 295

Query: 290 LWMVEDA 296
             M++DA
Sbjct: 296 ERMLQDA 302


>gi|319897393|ref|YP_004135590.1| d-alanine:d-alanine ligase [Haemophilus influenzae F3031]
 gi|317432899|emb|CBY81265.1| D-alanine:D-alanine ligase [Haemophilus influenzae F3031]
          Length = 306

 Score =  185 bits (470), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 118/304 (38%), Positives = 182/304 (59%), Gaps = 18/304 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD---LAFNV 57
           +AVL+GG S+EREVSL+SGKA   AL   G+    ID        +A+LK D    AFN+
Sbjct: 8   IAVLLGGTSAEREVSLNSGKAVLEALLKQGYNAYPIDPKE---YNVANLKKDGFNRAFNI 64

Query: 58  LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117
           LHG  GEDG +Q +LE + +PYT   ++ASAL+MDKMR+K +  + G+PV    +V R T
Sbjct: 65  LHGRGGEDGTMQGLLEQIGLPYTGCDVMASALTMDKMRTKMLWKAFGLPVADMKVVTRET 124

Query: 118 ---MDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
              +D Q +++    P ++KP   GSS+G+  +K  + +   +  +  +++   +LIE++
Sbjct: 125 FSELDPQAVVAKLGLPLMVKPSLEGSSVGLTKVKAVEELKSAVEYALKFDN--TILIEEW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G ELT  V+ +  L    I VP+ +FY Y+ KY S N+ +  PA +  +  +E+  L 
Sbjct: 183 LAGDELTVPVLDNQVLPAIRI-VPEGEFYDYKAKYISDNTQYFCPAGLTPEREQELAILV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWL-EINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             A+ A+GCRG SR D + D  ++  F L E+N  PGMT  S+FP+ AA  G SF +L++
Sbjct: 242 KRAYDAVGCRGWSRIDVMCD--AKGNFRLVEVNTNPGMTSHSLFPKSAATVGISFEQLVV 299

Query: 291 WMVE 294
            ++E
Sbjct: 300 KILE 303


>gi|148284350|ref|YP_001248440.1| D-alanine--D-alanine ligase [Orientia tsutsugamushi str. Boryong]
 gi|146739789|emb|CAM79664.1| D-alanine--D-alanine ligase [Orientia tsutsugamushi str. Boryong]
          Length = 291

 Score =  185 bits (470), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 98/293 (33%), Positives = 166/293 (56%), Gaps = 5/293 (1%)

Query: 8   ISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLA-FNVLHGNFGEDG 66
           +S+EREVSL S     +AL   G++V++IDV + + + L+ + P    FN L G +GEDG
Sbjct: 1   MSAEREVSLMSNDNVQAALISNGYQVTRIDVGQDIAVKLSEITPPYTVFNCLVGTYGEDG 60

Query: 67  LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP 126
            +  +L ++ IPYTHSG+  SA + DK  +K ++    +    SI +N         I  
Sbjct: 61  CIPGLLNIMNIPYTHSGVKTSAAAFDKQIAKTILQCYKIKTPASITINSNDNVINDPILR 120

Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186
           PYVIKPL+ GSS+G+ ++  +      L +   +  G+++L+EQY+ G EL   ++    
Sbjct: 121 PYVIKPLQQGSSIGVKIVHLEDKF---LFKDYKFQFGNKVLVEQYIKGRELQVALLDGKV 177

Query: 187 LDVTEIAVPKSD-FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
           + + EI + K   FY Y+ KYS   + H++P ++P++   ++  +A   ++   CRG  R
Sbjct: 178 VGILEIKMLKDKIFYDYQSKYSPGFAEHIIPPRLPVNTVNQIMNIAEKVYKIFDCRGPCR 237

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
            + +   +  +V+ +E+N  PGMT +S +PE+A Y G SF EL+  ++  A C
Sbjct: 238 LECILSDIDNEVYVIELNTHPGMTSLSSYPEIAQYYGISFNELVERILITAKC 290


>gi|261345642|ref|ZP_05973286.1| D-alanine--D-alanine ligase B [Providencia rustigianii DSM 4541]
 gi|282566124|gb|EFB71659.1| D-alanine--D-alanine ligase B [Providencia rustigianii DSM 4541]
          Length = 306

 Score =  185 bits (470), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 118/307 (38%), Positives = 164/307 (53%), Gaps = 15/307 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL SG A  + L  AG     ID      + L     D  F  LHG
Sbjct: 5   VAVLLGGTSAEREVSLQSGNAVLAGLRQAGIDAHPIDTQNFPVVTLKDAGFDKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR----- 115
             GEDG +Q +LE L +PYT SG++ASALSMDK+R+KQ+    G+ V P I +NR     
Sbjct: 65  RGGEDGTIQGMLEFLGLPYTGSGVMASALSMDKLRTKQLWQGAGLSVSPYISLNRQKYTN 124

Query: 116 -----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                     +HL   P ++KP   GSS+G+  +    ++P  +    ++   D LLIE+
Sbjct: 125 IKKEQLAQQVKHL-GLPLIVKPSLEGSSVGMSKVDSLDALPEAI--ELAFRFDDTLLIEK 181

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
           ++ G E T  V+GD  L    I  P   FY YE KY S  + +  P+ +      E+  +
Sbjct: 182 WLSGPEYTVAVLGDNVLPSIRIQ-PPGVFYDYEAKYLSDETQYFCPSGLDSQREAELADI 240

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A  A+QA+GCRG  R D + D    K + LE+N  PGMT  S+ P  A  AG  F +L+ 
Sbjct: 241 AMQAYQAVGCRGWGRVDVMQDS-DGKFYLLEVNTSPGMTSHSLVPMAARQAGLDFSQLVA 299

Query: 291 WMVEDAS 297
            ++E AS
Sbjct: 300 RILELAS 306


>gi|332527085|ref|ZP_08403165.1| D-alanine--D-alanine ligase [Rubrivivax benzoatilyticus JA2]
 gi|332111516|gb|EGJ11498.1| D-alanine--D-alanine ligase [Rubrivivax benzoatilyticus JA2]
          Length = 316

 Score =  185 bits (469), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 114/307 (37%), Positives = 170/307 (55%), Gaps = 13/307 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG S+ER+VSL SG     AL  AG      D        L H   + AF  LHG
Sbjct: 7   VAVLMGGSSAERQVSLMSGNGVLEALRRAGVDAHPFDPAERELAELKHAGFERAFIALHG 66

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG VQ  LELL IPYT SG++ASA++MDK+ +K++ ++ G+P      +       
Sbjct: 67  RHGEDGTVQGALELLRIPYTGSGVMASAIAMDKVMTKRIWAAEGLPTPRWAWLAPERQAR 126

Query: 121 QHLISP------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
           +H+++       P ++KP + GSS+GI  +     +  D ++ +S    D +L E+++DG
Sbjct: 127 EHVVAVPDQLGLPLIVKPPREGSSIGITKVAGYSEM-QDAVKLASEYDAD-VLCEEFIDG 184

Query: 175 IELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            E+TC V+GD     +L V  I  P  + Y +E KY S  + +  P+ +P     E+QRL
Sbjct: 185 EEVTCAVLGDGASARALPVIRIVAPGGN-YDFEHKYFSEETGYHCPSGLPPAEEAEIQRL 243

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
              A++ +GCRG  R+D +     RK F LE+N  PGMT  S+ P  A  AG S+ +L +
Sbjct: 244 TLAAYRLLGCRGWGRADLMIRASDRKPFLLEMNTSPGMTSHSLVPLAARVAGLSYEQLCV 303

Query: 291 WMVEDAS 297
            ++E A+
Sbjct: 304 HVLECAA 310


>gi|123441034|ref|YP_001005023.1| D-alanine--D-alanine ligase [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122087995|emb|CAL10783.1| D-alanine--D-alanine ligase B [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 306

 Score =  185 bits (469), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 113/298 (37%), Positives = 167/298 (56%), Gaps = 13/298 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL SG+A  + L +AG     ID        L     D  F  LHG
Sbjct: 5   VAVLLGGASAEREVSLLSGEAVLAGLREAGIDAHGIDTKDFPVTQLKEQGFDKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---FT 117
             GEDG +Q +LE L++PYT SG++ASAL+MDK+R+K V  + G+P+ P I +NR    T
Sbjct: 65  RGGEDGTLQGVLEFLQLPYTGSGVMASALTMDKLRTKLVWQASGLPISPYIALNRQQFET 124

Query: 118 MDSQHL------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
           + S+ L      +  P ++KP   GSS+G+   K DQ+  L      ++ H   +LIE++
Sbjct: 125 LSSEELAACVAKLGLPLIVKPSHEGSSVGM--SKVDQANQLHSALVEAFRHDTDVLIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L    I  P   FY YE KY S  + +  P+ +  ++ +++  L+
Sbjct: 183 LSGPEFTVAILGNDVLPSIRIQAPGV-FYDYEAKYLSDETQYFCPSGLSAELEQQLAALS 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
             A+QA+GC G  R D + D   R  + LE+N  PGMT  S+ P  A   G SF +L+
Sbjct: 242 LQAYQALGCSGWGRVDVMQDSDGR-FYLLEVNTSPGMTSHSLVPMAARQHGLSFSQLV 298


>gi|210634764|ref|ZP_03298292.1| hypothetical protein COLSTE_02219 [Collinsella stercoris DSM 13279]
 gi|210158704|gb|EEA89675.1| hypothetical protein COLSTE_02219 [Collinsella stercoris DSM 13279]
          Length = 319

 Score =  185 bits (469), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 119/306 (38%), Positives = 174/306 (56%), Gaps = 17/306 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD---LAFNV 57
           +AVL GG S ERE+SL+SGK    AL +AG+   ++ +D +    L  +  D    AF  
Sbjct: 11  IAVLAGGTSDEREISLASGKNVVHALTEAGYGSVEL-IDPAAPTFLERMTGDGWDAAFIA 69

Query: 58  LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117
           LHG  GEDG +Q +LE L IPYT S  LAS ++MDK  SK +    G+PV PS+   R  
Sbjct: 70  LHGIGGEDGRIQHVLEFLGIPYTASSPLASGIAMDKDLSKLLYRRAGLPVAPSVTFGRAD 129

Query: 118 M----DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
           M    +   ++     +KP+  GSS G I + KD S   + ++  ++ HG+++++E+ V 
Sbjct: 130 MLPLEEIVAVVGEQSFVKPVVNGSSYG-ISLAKDPSELANAIE-VAFEHGEKVMVEKRVF 187

Query: 174 GIELTCGVMGDA----SLDVTEIAVP-KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           G E +   +GD     +L V EI VP +S+FY  E+KY+     H +PA +P D+Y +VQ
Sbjct: 188 GTECSVAAVGDGETLRALPVVEILVPEQSEFYDLEVKYADPKDLHRIPACLPEDVYAQVQ 247

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
            +A  AH+A+G  GISR+D +          LE N  PGMTP S+ P+ A +AG  F EL
Sbjct: 248 EIACRAHEALGLYGISRTDVIV--TEDGPVILETNNIPGMTPESLVPDEARHAGIPFSEL 305

Query: 289 LLWMVE 294
              +V+
Sbjct: 306 CAELVD 311


>gi|251792025|ref|YP_003006745.1| D-alanine--D-alanine ligase [Aggregatibacter aphrophilus NJ8700]
 gi|247533412|gb|ACS96658.1| D-alanine--D-alanine ligase B [Aggregatibacter aphrophilus NJ8700]
          Length = 309

 Score =  185 bits (469), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 113/300 (37%), Positives = 170/300 (56%), Gaps = 10/300 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SG A   AL   G+    ID        L     D  FN+LHG
Sbjct: 10  IAVLLGGTSAEREVSLNSGNAVLVALRKQGYDAHPIDPKTFPVATLKEQGFDRVFNILHG 69

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFT 117
             GEDG +Q +LE + +PYT  G++ASAL+MDKMR+K +  + G+PV    +V   NR  
Sbjct: 70  RGGEDGTMQGLLEQIGLPYTGCGVMASALTMDKMRTKMLWKAFGLPVAEMEIVTKENRVN 129

Query: 118 MDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
           ++   ++     P ++KP   GSS+G+  +K  +   L+     +      +LIE+++ G
Sbjct: 130 LNPMAVVKKLGLPLMVKPSLEGSSVGLTKVKAVEE--LESAVDFALKFDRTVLIEEWLAG 187

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
            E T  V+    L   +I VP+ +FY Y+ KY S N+ +  PA +  +  +E++RL   A
Sbjct: 188 DEFTVPVLDGEVLPSIKI-VPEGEFYDYDAKYISDNTQYFCPAGLTEEREQELRRLVKQA 246

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           +  +GCRG SR D + D    K   +E+N  PGMT  S+FP+ AA  GYSF +L+  ++E
Sbjct: 247 YDVVGCRGWSRIDVMADA-EGKFRLVEVNTNPGMTSHSLFPKSAATVGYSFEQLVEKILE 305


>gi|162455138|ref|YP_001617505.1| D-alanine-D-alanine ligase B [Sorangium cellulosum 'So ce 56']
 gi|161165720|emb|CAN97025.1| D-alanine-D-alanine ligase B [Sorangium cellulosum 'So ce 56']
          Length = 345

 Score =  185 bits (469), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 115/300 (38%), Positives = 165/300 (55%), Gaps = 19/300 (6%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL----VLAHLKPDLAFN 56
           + V+MGG S ER+VSL SG A A ALE  G+ V +I +    G      L   + D AF 
Sbjct: 10  VGVVMGGSSGERDVSLRSGAAVAEALEARGYDVVRITLGDRFGAELCATLQRARLDAAFL 69

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116
            LHG  GEDG VQ +LEL ++PYT S +LASAL+MDK+++K++     VP  P   V   
Sbjct: 70  ALHGRLGEDGCVQGVLELAQVPYTGSSVLASALAMDKLKAKEMFRLHNVPTPPYYTVGAN 129

Query: 117 T----MDSQH-LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS---SWNHGDQLLI 168
                +D+ H     P ++KP   GSSLG+      ++  L+ L+S+   ++   D  ++
Sbjct: 130 QDLEELDAVHGSFGFPVIVKPRGEGSSLGVT-----KAGSLEELKSALALAFEFDDAAIV 184

Query: 169 EQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           E++V G E+  G++    L   EI VPK   Y YE KY+   + + +PA++P   Y+ V 
Sbjct: 185 ERFVAGTEVNVGILDGKVLGAIEI-VPKKGLYDYEAKYTPGMTEYHMPARLPPTRYRGVL 243

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
            LA  A QA+GC G  R D L        + LE+N  PGMT  S+ P++A  AGY F +L
Sbjct: 244 NLAERAAQALGCTGAVRVDLLVTG-GENEYVLEVNTLPGMTQTSLLPKIAEAAGYEFGDL 302


>gi|294783649|ref|ZP_06748973.1| D-alanine--D-alanine ligase [Fusobacterium sp. 1_1_41FAA]
 gi|294480527|gb|EFG28304.1| D-alanine--D-alanine ligase [Fusobacterium sp. 1_1_41FAA]
          Length = 287

 Score =  184 bits (468), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 115/299 (38%), Positives = 173/299 (57%), Gaps = 23/299 (7%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD--LAFNVL 58
           +AV MGG SSE+E+SL SG+A   +L+  G+    + +D +   V A L+ D  LA+ VL
Sbjct: 3   IAVFMGGTSSEKEISLRSGEAVLESLQRQGYDAYGVVLDEN-NQVTAFLENDYDLAYLVL 61

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
           HG  GE+G +QA+L++L   YT SG+LASAL+MDK ++KQ+  + G+ V  S        
Sbjct: 62  HGGNGENGKIQAVLDILGKKYTGSGVLASALTMDKNKTKQIAENIGIRVPKSY------R 115

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVI--KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
           D   +   P +IKP+  GSS G+ +   K++    L  L+          +IE Y+ G E
Sbjct: 116 DLDSIERFPVIIKPVDEGSSKGLFLCNNKEEAGEALKKLRKP--------IIEDYIVGEE 167

Query: 177 LTCGVMGDASLDVTEIAVPKSD-FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
           LT GV+   +L V +I +P++D  Y Y+ KY+   S H  PAKI    YKE  ++A   H
Sbjct: 168 LTVGVLNGKALGVLKI-IPQADVLYDYDSKYAKGGSIHEFPAKIEDKSYKEAMKIAEKIH 226

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           +    +GISRSDF+      K+++LE+N  PGMT  S+ P++A   GY+F +++   VE
Sbjct: 227 KEFKMKGISRSDFILS--EGKLYFLEVNSSPGMTKTSLIPDLATLQGYTFDDVVRLTVE 283


>gi|224368043|ref|YP_002602206.1| DdlA [Desulfobacterium autotrophicum HRM2]
 gi|223690759|gb|ACN14042.1| DdlA [Desulfobacterium autotrophicum HRM2]
          Length = 309

 Score =  184 bits (468), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 110/304 (36%), Positives = 176/304 (57%), Gaps = 15/304 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP-DLAFNVLH 59
           +A+L GGISSEREVSL+ G     AL+   + + + D    +  ++   +  D+A  +LH
Sbjct: 6   LALLSGGISSEREVSLNGGFQVYEALDKERYDIVRYDPATDLATLVNDAETIDVALLILH 65

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G FGEDG VQ +L+LL+IPY  +G+L SA++M+K+ SK++    G+P    +  +R    
Sbjct: 66  GPFGEDGTVQGLLDLLDIPYQGAGVLGSAIAMNKLVSKRLYLQAGIPTPEFLSFSRTDKV 125

Query: 120 SQHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175
             H     +  P V+KP+  GSS+G+ ++K+++++   L     +   + +L+E YV G+
Sbjct: 126 DLHACVERLGLPIVVKPVSAGSSVGMSIVKQEKNLGAAL--EKGFEQDEAVLLEAYVKGL 183

Query: 176 ELTCGVMGDASLD---VTEIAVPKS--DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
           ELTC V+G+  ++   V EI +P    +F+ Y+ KY +  +  + PA+I   + K VQ  
Sbjct: 184 ELTCAVVGNQEIEAMPVIEI-LPGEGHEFFDYDAKYVAGRTQEICPARIEESVRKTVQAH 242

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A  AH+A+  +G SR+D +     R V  LE N  PGMT  S+ P  A  AGYSF +LL 
Sbjct: 243 AIEAHKALFLKGYSRTDMILS--DRGVTVLETNTIPGMTETSLLPRAAKVAGYSFSQLLD 300

Query: 291 WMVE 294
            ++E
Sbjct: 301 RLIE 304


>gi|83589988|ref|YP_429997.1| D-alanine--D-alanine ligase [Moorella thermoacetica ATCC 39073]
 gi|123524583|sp|Q2RJD5|DDL_MOOTA RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|83572902|gb|ABC19454.1| D-alanine--D-alanine ligase [Moorella thermoacetica ATCC 39073]
          Length = 309

 Score =  184 bits (468), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 112/307 (36%), Positives = 173/307 (56%), Gaps = 18/307 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSERE+SL SG A A+AL   G +V  ID++R V   L +  PD+ FN LHG
Sbjct: 3   IAVLMGGPSSEREISLKSGSAVAAALSGLGHQVITIDLNREVVARLKNFAPDVVFNALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFT 117
             GEDG VQ +LE+L +PYT S +LASA++MDK+ +K+V+   G+P  P  L      + 
Sbjct: 63  KPGEDGSVQGLLEVLGLPYTGSRVLASAITMDKIMTKRVLLQAGIP-TPKFLAWTGAEYA 121

Query: 118 MDSQHL-------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
              + +       +  P VIK    GS++G  +++++    L+   + +  +    + E 
Sbjct: 122 TGKKEIKAAILKELGLPVVIKAPTQGSTIGTFIVREEGE--LEPAIAGALKYDLSFMAEA 179

Query: 171 YVDGIELTCGVMGDAS---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227
           Y+ G E+T  V+G+     L + EI V  + FY Y+ KY+   S H++P ++P D+    
Sbjct: 180 YLAGPEITAAVLGNRKPQVLPLIEI-VSHTGFYDYQAKYTPGLSDHIIPPRLPDDVLAAA 238

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287
             LA   +  +GCRG +R DF+     R+   +E+N  PGMT  S+ P+ A  AG  F +
Sbjct: 239 TSLAGRTYALLGCRGFARVDFIVAG-GREPQVIEVNSVPGMTATSLVPDAARAAGLDFPD 297

Query: 288 LLLWMVE 294
           L+  +V+
Sbjct: 298 LVQKIVD 304


>gi|332974211|gb|EGK11144.1| D-alanine-D-alanine ligase B [Kingella kingae ATCC 23330]
          Length = 307

 Score =  184 bits (467), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 114/302 (37%), Positives = 169/302 (55%), Gaps = 11/302 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP---DLAFNV 57
           +AVLMGG SSERE+SL SG+A   AL   G      D  ++    LA LK    D+AFN+
Sbjct: 7   VAVLMGGFSSEREISLISGQAIVDALRSKGVDAHPFDPAQTE---LAKLKKQGFDIAFNI 63

Query: 58  LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NR 115
           LHG +GEDG VQ  LE L +PYT  G+LASAL MDK R K + S+ G+P+ P +++  N 
Sbjct: 64  LHGTYGEDGTVQGALEALGVPYTGCGVLASALGMDKYRCKLIWSALGLPIPPFVVLHDNS 123

Query: 116 FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175
              + +  +  P  IKP   GSS+G++ +K+   +  +  +         +L EQ++ G 
Sbjct: 124 HFAEVEQQLGLPLFIKPAAEGSSVGVVKVKQAGDLATEYAKLRDMGLHGVILAEQFMSGG 183

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
           E TCGV    +L    I +P+++FY YE KY   ++ ++ P+ +  D    +Q LA  A 
Sbjct: 184 EYTCGVFNRQALPTIRI-IPQTEFYDYEAKYLRDDTVYLCPSDLNADDEARMQHLAQQAF 242

Query: 236 QAI-GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           +AI G   + R DFL D +   ++ LE N  PGMT  S+ P+ A   G  F +L + ++ 
Sbjct: 243 EAIGGGNSLGRIDFLKDSVG-CLYILEANTLPGMTSHSLIPKSAKQIGIDFADLCIAILN 301

Query: 295 DA 296
           +A
Sbjct: 302 NA 303


>gi|292489355|ref|YP_003532242.1| D-alanine-D-alanine ligase [Erwinia amylovora CFBP1430]
 gi|292898421|ref|YP_003537790.1| D-alanine--D-alanine ligase B [Erwinia amylovora ATCC 49946]
 gi|291198269|emb|CBJ45375.1| D-alanine--D-alanine ligase B [Erwinia amylovora ATCC 49946]
 gi|291554789|emb|CBA22610.1| D-alanine-D-alanine ligase [Erwinia amylovora CFBP1430]
          Length = 306

 Score =  184 bits (467), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 111/303 (36%), Positives = 165/303 (54%), Gaps = 13/303 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+ER+VSL SG A    L++AG     +D+       L     + AF  LHG
Sbjct: 5   VAVLLGGTSAERDVSLLSGTAVLKGLQEAGIDAYPVDIRDFPVTRLKEEGFEKAFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119
             GEDG +Q +LE L IPYT SG++ASA++MDK+RSK +   CG+PV P + + R  MD 
Sbjct: 65  RGGEDGTLQGVLEFLNIPYTGSGVMASAITMDKLRSKYLWQGCGLPVSPFVALTRAQMDA 124

Query: 120 --------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                   S   +  P  +KP + GSS+GI  + +   +   L ++  ++H  ++L+E +
Sbjct: 125 GLDAQVMASIDALGLPLFVKPSREGSSVGISRVNQASELQAALEEAFRFDH--EVLVEAF 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T GV+G   L    I    S+FY Y+ KY S  + +  P+ +  D   E++ L 
Sbjct: 183 LSGPEYTVGVLGTDILPSIRIQT-ASEFYDYDAKYFSDETQYFCPSGLSADQEAELRELT 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A  A+GC G  R D +     R  + LE+N  PGMT  S+ P  A  AG SF +L+  
Sbjct: 242 ISAWNALGCSGWGRVDVMMGGDGR-FYLLEVNTSPGMTSHSLVPMAAKQAGMSFSQLVAR 300

Query: 292 MVE 294
           ++E
Sbjct: 301 ILE 303


>gi|325578819|ref|ZP_08148866.1| D-alanine-D-alanine ligase B [Haemophilus parainfluenzae ATCC
           33392]
 gi|325159643|gb|EGC71775.1| D-alanine-D-alanine ligase B [Haemophilus parainfluenzae ATCC
           33392]
          Length = 316

 Score =  184 bits (467), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 115/307 (37%), Positives = 181/307 (58%), Gaps = 24/307 (7%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD---LAFNV 57
           +AVL+GG S+EREVSL+SG A  +AL   G+    ID        +A+LK D     FN+
Sbjct: 18  IAVLLGGTSAEREVSLNSGAAVLNALVSQGYNAHGIDPKE---YNVANLKADGFDRVFNI 74

Query: 58  LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117
           LHG  GEDG +Q +LE + +PYT  G++ASAL+MDKMR+K +  + G+PV    +V   T
Sbjct: 75  LHGRGGEDGTMQGLLEQIGLPYTGCGVMASALTMDKMRTKMLWKAFGLPVADMEIV---T 131

Query: 118 MDSQHLISP---------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168
            ++ H ++P         P ++KP   GSS+G+  +K  + +   +  +  ++  + +LI
Sbjct: 132 KENAHELNPQAVVEKLGLPLMVKPSLEGSSVGLTKVKAVEELKSAVDYALKFD--NTILI 189

Query: 169 EQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           E+++ G ELT  V+G   L    I VP+ +FY Y+ KY S N+ +  PA +  +  +E+ 
Sbjct: 190 EEWLAGDELTVPVLGGEVLPAVRI-VPEGEFYDYDAKYISDNTQYFCPAGLSAEREQELA 248

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL-EINVQPGMTPVSIFPEMAAYAGYSFRE 287
           +L   A+  +GCRG SR D + D  ++  F L E+N  PGMT  S+FP+ A+  G SF +
Sbjct: 249 KLVKRAYDVVGCRGWSRIDVMTD--AQGNFRLVEVNTNPGMTSHSLFPKSASTVGISFEQ 306

Query: 288 LLLWMVE 294
           L++ ++E
Sbjct: 307 LVVKILE 313


>gi|56416508|ref|YP_153582.1| D-alanine--D-alanine ligase [Anaplasma marginale str. St. Maries]
 gi|222474876|ref|YP_002563291.1| D-alanine--D-alanine ligase (ddlB) [Anaplasma marginale str.
           Florida]
 gi|81821304|sp|Q5PBK2|DDL_ANAMM RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|254767716|sp|B9KHS3|DDL_ANAMF RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|56387740|gb|AAV86327.1| D-alanine--D-alanine ligase [Anaplasma marginale str. St. Maries]
 gi|222419012|gb|ACM49035.1| D-alanine--D-alanine ligase (ddlB) [Anaplasma marginale str.
           Florida]
          Length = 334

 Score =  184 bits (466), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 112/299 (37%), Positives = 174/299 (58%), Gaps = 7/299 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-SVGLVLAHLKPDLAFNVLH 59
           +AVL GG S EREVSL+ GK  A AL   G+  + +D++R SVG +LA + PDL +N LH
Sbjct: 14  VAVLCGGSSPEREVSLAGGKRVADALGRLGYNATVLDLNRESVGQLLA-MAPDLVYNALH 72

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-SILVNRFTM 118
           G  GEDG V  +L++L +  THS + AS++ MDK+ +K V+ S G+      +L     +
Sbjct: 73  GVQGEDGCVSGLLDILGLACTHSHVAASSVGMDKVLTKHVLKSLGIDFPKFDVLTKEELL 132

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            ++ ++  P+VIKP++GGS++G+  I   +S  LD L + +    D++++E+YV G E+ 
Sbjct: 133 SAKEVLPYPFVIKPVRGGSTIGVHAIFS-KSEYLD-LSAHADTLEDRMIVEEYVSGQEVQ 190

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             V    ++   E+   +   YSY+ KY      H+ PA +P DIY      A   HQ +
Sbjct: 191 TAVFLGRAIGTMELLF-EGRIYSYDAKYVEGLCEHIFPANLPYDIYNLTLEWALKLHQCL 249

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPE-MAAYAGYSFRELLLWMVEDA 296
           GC+ +SR DF +D  ++ +  LEIN  PGMT  S  PE +    G +F  ++  +V+DA
Sbjct: 250 GCKTLSRVDFRYDVANKALKLLEINTHPGMTVSSTLPEVLWLRCGLNFDHVVDLIVQDA 308


>gi|327392726|dbj|BAK10148.1| D-alanine--D-alanine ligase B DdlB [Pantoea ananatis AJ13355]
          Length = 305

 Score =  184 bits (466), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 113/303 (37%), Positives = 167/303 (55%), Gaps = 13/303 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG S+ER+VSL SG A  + L +AG     ID      L L     +  F  LHG
Sbjct: 4   VAVLMGGTSAERDVSLMSGGAVLAGLREAGIDAQGIDTRDVSVLELTAQGFEKVFIALHG 63

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +QA+LE L++PYT SG++ASA++MDK+R+K +    G+P    + + R  M S
Sbjct: 64  RGGEDGTLQAVLEFLQLPYTGSGVMASAVTMDKLRTKLLWQGRGLPAGKFVWITREQMQS 123

Query: 121 ------QHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +  IS    P  +KP   GSS+GI  + +   +P  L    ++ H D +L+E +
Sbjct: 124 GLDATTEAAISALGLPLFVKPSSEGSSVGISRVNQLSDLPAAL--EEAFRHDDNVLVEAF 181

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T G++GD  L   +I    S+FY YE KY S ++ +  PA +  +   E+Q+L 
Sbjct: 182 LSGEEYTVGILGDQILPAIKIKTA-SEFYDYEAKYISDDTQYFCPAGLSAEREAELQQLV 240

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           + A +A+GC G  R D + D        LE N  PGMT  S+ P  A  AG +F +L++ 
Sbjct: 241 WSAWRALGCSGWGRVDVMTDDQGHFQL-LEANTSPGMTSHSLVPMAAKQAGLTFSQLVVR 299

Query: 292 MVE 294
           ++E
Sbjct: 300 ILE 302


>gi|284048637|ref|YP_003398976.1| D-alanine/D-alanine ligase [Acidaminococcus fermentans DSM 20731]
 gi|283952858|gb|ADB47661.1| D-alanine/D-alanine ligase [Acidaminococcus fermentans DSM 20731]
          Length = 310

 Score =  184 bits (466), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 113/308 (36%), Positives = 179/308 (58%), Gaps = 17/308 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLA---FNV 57
           +AV+MGG S EREVSL++G A  +AL++ G+    ID+D     ++  LK   A   FN 
Sbjct: 7   VAVVMGGPSKEREVSLNTGNAILNALKEKGYDAVAIDLDPE--HIVDQLKASGARVVFNA 64

Query: 58  LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN-RF 116
           +HG +GEDG +Q ILE+L IPYT SG+LASAL+MDK+ +K +  +  VP    I ++ + 
Sbjct: 65  VHGLYGEDGRLQGILEMLGIPYTGSGVLASALAMDKVYTKHLFQNNHVPTARCIFLDKKR 124

Query: 117 TMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
             D +      I  P V+KP   GSS+G++++K ++ +  D LQ  ++ +GD +L E + 
Sbjct: 125 DQDPKARILEEIGIPCVVKPATQGSSIGVVIVKDEKQLD-DALQ-EAFQYGDHVLCEAFF 182

Query: 173 DGIELTCGV-MGDASLDVTEIAV---PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
            G E+  GV MG+    V    V   P  +FY +  KY+   +T+  PA    +  + +Q
Sbjct: 183 TGKEVAAGVMMGEDGRAVPMPLVLIEPHVNFYDFHNKYTKGATTYTCPAPFDAETTRRLQ 242

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           ++A  A++A+GC G++R+D +    +     LE+N  PGMT  S+ P+ AA  G SF +L
Sbjct: 243 KIAVAAYEALGCSGVARTDLMLAD-NGDCIALEVNTIPGMTATSLIPKAAAAMGISFPDL 301

Query: 289 LLWMVEDA 296
              +++ A
Sbjct: 302 CEKILKTA 309


>gi|187934805|ref|YP_001887261.1| D-alanine--D-alanine ligase [Clostridium botulinum B str. Eklund
           17B]
 gi|229463743|sp|B2TPY4|DDL_CLOBB RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|187722958|gb|ACD24179.1| D-alanine--D-alanine ligase [Clostridium botulinum B str. Eklund
           17B]
          Length = 301

 Score =  184 bits (466), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 102/299 (34%), Positives = 173/299 (57%), Gaps = 8/299 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGGISSERE+SL SGK+   ++    ++V  I +D    ++      D A   LHG
Sbjct: 3   VGVIMGGISSEREISLKSGKSIVDSINKNKYEVVSIVIDEKEDIINKVKGIDFALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---FT 117
            FGEDG VQ++L+ LEIPY+  G L+S++ MDK  SK ++ +  +   P I + R     
Sbjct: 63  QFGEDGTVQSVLQTLEIPYSGCGPLSSSMCMDKDISKCILKAANIRTAPWINLRRNDKIN 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            +    +  P V+KP  GGSS+   +IK+++ I   + ++  W+   +++IE+++ G E+
Sbjct: 123 YEKIEGMGYPVVVKPTHGGSSVATFIIKEEKDIKNAVTEAFKWDS--EVIIEKFIKGDEI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC V GD  L V  I  PK++F+ +  KY+   S   +  ++P ++++EV+ +A   ++A
Sbjct: 181 TCPVFGDKMLPVVAIK-PKAEFFDFTAKYADGGSDEFV-TELPKELHEEVEEMALATYKA 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           + C   SR D +     +  + LE+N  PGMTP S+ P+ AA    SF EL+  +++++
Sbjct: 239 LKCEVYSRVDMIVTE-DKVPYILEVNTLPGMTPNSLIPKSAAGVNISFSELIDMIIDES 296


>gi|332288550|ref|YP_004419402.1| D-alanine-D-alanine ligase [Gallibacterium anatis UMN179]
 gi|330431446|gb|AEC16505.1| D-alanine-D-alanine ligase [Gallibacterium anatis UMN179]
          Length = 311

 Score =  183 bits (465), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 112/301 (37%), Positives = 174/301 (57%), Gaps = 11/301 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFK-VSQIDVDRSVGLVLAHLKPDLAFNVLH 59
           +AVL+GG S+EREVSL+SG A   AL+D GF  V  ID        L        FN+LH
Sbjct: 11  IAVLLGGTSAEREVSLNSGAAVLKALQDEGFTDVHAIDPKEFPVEDLKKQGFQRVFNILH 70

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT-- 117
           G  GEDG +Q +LE L IPYT  G+++SAL+MDKMR+K +  + G+PV   +++ + T  
Sbjct: 71  GRGGEDGSLQGLLEQLGIPYTGCGVMSSALTMDKMRTKLLWKAVGLPVAEMVVITKETRS 130

Query: 118 -MDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
            +D+Q +++    P ++KP   GSS+G+  +KK + +   +   ++  H D +LIE+++ 
Sbjct: 131 QLDAQAVVAKLGLPLMVKPSLEGSSVGLTKVKKVEELAAAV--DTALTHDDTVLIEEWLA 188

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           G E +  V+G   L    I  P  +FY Y+ KY   ++ +  P+ +  +   E++ L   
Sbjct: 189 GQEFSVPVLGGKVLPSILIK-PAGEFYDYDAKYLLDSTQYFCPSGLSEERENELRNLVKQ 247

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           A+  +GCRG SR D + D   R    +E+N  PGMT  S+FP  A   GYSF +L++ ++
Sbjct: 248 AYDIVGCRGWSRIDVMTDAQGR-FRLVEVNTNPGMTSHSLFPMAAKVVGYSFSQLVVKIL 306

Query: 294 E 294
           E
Sbjct: 307 E 307


>gi|238927323|ref|ZP_04659083.1| UDP-N-acetylmuramate--L-alanine ligase [Selenomonas flueggei ATCC
           43531]
 gi|238884605|gb|EEQ48243.1| UDP-N-acetylmuramate--L-alanine ligase [Selenomonas flueggei ATCC
           43531]
          Length = 785

 Score =  183 bits (465), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 110/299 (36%), Positives = 175/299 (58%), Gaps = 15/299 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59
           + V+MGG SSE EVS  SG A   AL   G+    ++++  +    +  L P + FN LH
Sbjct: 479 IVVVMGGPSSEAEVSRRSGGAILQALLSKGYPAVGMELNPATFAEEIQALHPAIVFNALH 538

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV--CPSILVNRFT 117
           G +GEDG++Q  L++L IPYT SG+ A+AL+MDK+ +K+V+++ G+P   C S   +  T
Sbjct: 539 GKYGEDGILQGTLDMLGIPYTGSGVRAAALTMDKITAKRVLAAEGIPTPRCMSFYASERT 598

Query: 118 MDSQHLI----SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
             +   I    S P V+K  + GSS+G+ ++  D+ +   L   +++ +GD++L+E+Y++
Sbjct: 599 EHTPQEIRAAFSLPLVVKAPEQGSSIGVYIVAADKELVPAL--DAAFTYGDEVLVEEYIE 656

Query: 174 GIELTCGVMGDAS----LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           G EL+  V G  +    + + EI VP S  Y YE KY+    TH++PA I  +  +EV++
Sbjct: 657 GRELSVVVWGSPAAAEVMPIIEIEVP-SGRYDYESKYTPGGVTHLVPAPISAECRREVEQ 715

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           LA  A+ A GC G++R D L      + + +E+N  PGMT  S+ P+ A   G  F EL
Sbjct: 716 LARRAYAACGCNGLARVDLLLSA-ENQPYVIELNAVPGMTETSLVPDAARAVGIDFPEL 773


>gi|297569924|ref|YP_003691268.1| D-alanine/D-alanine ligase [Desulfurivibrio alkaliphilus AHT2]
 gi|296925839|gb|ADH86649.1| D-alanine/D-alanine ligase [Desulfurivibrio alkaliphilus AHT2]
          Length = 315

 Score =  183 bits (465), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 112/295 (37%), Positives = 171/295 (57%), Gaps = 15/295 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL-KPDLAFNVLH 59
           +A+L GG S EREVSL+  +    A+    + V + D    +  ++A   + D+AF +LH
Sbjct: 9   VALLAGGKSGEREVSLAGAREVEKAINTERYDVRRYDPATDLARLVADAPQLDVAFILLH 68

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G  GEDG +Q +L+LLEIPY  SG+L SAL+MDK  +KQ+    G+ V    +     +D
Sbjct: 69  GPLGEDGSIQGLLDLLEIPYQGSGVLGSALAMDKDLAKQLYRHAGLLVPAWEMAGSADLD 128

Query: 120 SQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175
                   +  P V+KP++ GSSLG+ ++  DQ   L      +++  DQ+++E+++ G 
Sbjct: 129 DPARLLQSLKLPLVVKPVRQGSSLGMSLV--DQPAELVPALKLAFDFDDQVMVEEFIAGR 186

Query: 176 ELTCGVMGDASLD---VTEIAVPKSD--FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
           ELT GV+G+A L    V EI +P  +  F+ Y+ KY +  +  + PA++P ++  EVQR 
Sbjct: 187 ELTGGVLGNADLTPLPVVEI-IPGKEYRFFDYQAKYQAGATREICPAQLPAEVTAEVQRC 245

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285
           A LAHQA+  RG SR+D +       ++ LE N  PGMTP S+ P+ AA  G SF
Sbjct: 246 ACLAHQALNLRGYSRTDMIL--AEGGLYVLETNTIPGMTPTSLLPQAAATHGLSF 298


>gi|94268696|ref|ZP_01291259.1| D-alanine--D-alanine ligase [delta proteobacterium MLMS-1]
 gi|93451501|gb|EAT02328.1| D-alanine--D-alanine ligase [delta proteobacterium MLMS-1]
          Length = 314

 Score =  183 bits (465), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 112/299 (37%), Positives = 171/299 (57%), Gaps = 15/299 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP-DLAFNVLH 59
           +A+L GG S+EREVSLS       AL  + ++V + D    +  + A     D+AF +LH
Sbjct: 9   VALLAGGKSAEREVSLSGAAGVEKALAGSRYRVRRYDPATDLPRLAADAASIDVAFVLLH 68

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G  GEDG +Q  L+LL IPY  SG+L SAL+MDK  +K++    G+ V    +     + 
Sbjct: 69  GTLGEDGTIQGFLDLLGIPYQGSGVLGSALAMDKDLAKELYRLAGLKVPAWEMARPADIA 128

Query: 120 SQH----LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175
             H    L+SPP V+KP++ GSSLG+ ++  ++ +   L   +++ H DQ+++EQ+V G 
Sbjct: 129 EPHRLLALLSPPLVVKPVRQGSSLGMSIVDAEEELTPAL--ETAFAHDDQVMVEQFVAGR 186

Query: 176 ELTCGVMGD---ASLDVTEIAVPKSD--FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
           E+T GV+G+    +L V EI +P     F+ Y+ KY    S  V PA++P  +  +VQ  
Sbjct: 187 EVTGGVLGNDQLTALPVVEI-IPGEQYRFFDYQAKYQPGASREVCPAELPPAVTAQVQEW 245

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           A  AH+ +  +G SR+D +    +  ++ LE N  PGMTP S+FP+ AA  G  F  LL
Sbjct: 246 ACRAHRVLRLKGYSRTDMIL--AADGLYVLETNTIPGMTPTSLFPQAAAAHGLDFGALL 302


>gi|304396565|ref|ZP_07378446.1| D-alanine/D-alanine ligase [Pantoea sp. aB]
 gi|304356074|gb|EFM20440.1| D-alanine/D-alanine ligase [Pantoea sp. aB]
          Length = 306

 Score =  183 bits (464), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 114/303 (37%), Positives = 168/303 (55%), Gaps = 13/303 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG S+EREVSL+SG+A  + L + G     ID      L L       AF  LHG
Sbjct: 5   VAVLMGGTSAEREVSLNSGQAVIAGLREMGINAHGIDTRHVSVLTLKEQGFTKAFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR----- 115
             GEDG +QA+LE L++PYT SG++ASA++MDK+R+K +    G+P    + + R     
Sbjct: 65  RGGEDGTMQAVLEFLQLPYTGSGVMASAVTMDKLRTKLLWQGRGLPSGKFVWLTRQQFEG 124

Query: 116 -FTMDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
               +S   I+    P  +KP   GSS+GI  +    ++P  L    ++ + + +L+E +
Sbjct: 125 GLDEESNAAIAALGLPLFVKPACEGSSVGISRVNDLHALPAAL--EMAFKYDNDVLVEAF 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++GD  L   EI    S+FY YE KY S ++ +V PA++  +   E+Q+L 
Sbjct: 183 LSGAEYTVAIVGDRILPSIEIK-SASEFYDYEAKYISDDTQYVCPAELSAEREAELQQLV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A +A+GCRG  R D + D   R    LE N  PGMT  S+ P  A  AG SF +L+  
Sbjct: 242 LAAWRALGCRGWGRVDVMTDGEGRFQL-LEANTSPGMTSHSLVPMAAKQAGMSFPQLVAH 300

Query: 292 MVE 294
           ++E
Sbjct: 301 ILE 303


>gi|320355011|ref|YP_004196350.1| D-alanine--D-alanine ligase [Desulfobulbus propionicus DSM 2032]
 gi|320123513|gb|ADW19059.1| D-alanine--D-alanine ligase [Desulfobulbus propionicus DSM 2032]
          Length = 315

 Score =  183 bits (464), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 106/304 (34%), Positives = 175/304 (57%), Gaps = 17/304 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLA---HLKPDLAFNV 57
           +A++ GG S EREVSL        AL+   ++V + D    +  + A   H+  D+AF +
Sbjct: 6   LALIAGGTSDEREVSLRGAAGVEQALDPDKYEVVRYDPATDLAKIAADAAHI--DVAFLL 63

Query: 58  LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117
           LHG  GEDG +Q  L+LL IPY  +G+L SAL+MDK  +K +    G+PV P ++V    
Sbjct: 64  LHGVHGEDGTIQGFLDLLGIPYQGAGVLGSALAMDKHLAKTMYKLHGLPVAPWVMVEAGD 123

Query: 118 M-DSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
           + D++ +++    P V+KP++ GSS+G+ ++++ + +P  L    +  H +++++E Y+ 
Sbjct: 124 LADTRRIVTEVGLPCVVKPVRQGSSIGMSIVREKEQLPAAL--RLALRHDNEVMVEAYIK 181

Query: 174 GIELTCGVMGDASLD----VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           G ELT GV+G+A L     +  I   + +F+ YE KY    S  + PA +  ++ ++ Q 
Sbjct: 182 GRELTAGVLGNAELTALPLIEIIPDARYEFFDYEAKYQPGASKEICPAPVSDEVRQKAQA 241

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
            A  AH+++  RG SR+D +      +++ LE N  PGMTP S+ P+ AA AG  F  LL
Sbjct: 242 YAMEAHRSLQLRGYSRTDMIL--AGDELYLLETNTIPGMTPTSLLPQAAAEAGIPFAALL 299

Query: 290 LWMV 293
             +V
Sbjct: 300 DRLV 303


>gi|301155888|emb|CBW15357.1| D-alanine:D-alanine ligase [Haemophilus parainfluenzae T3T1]
          Length = 306

 Score =  183 bits (464), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 114/304 (37%), Positives = 181/304 (59%), Gaps = 18/304 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD---LAFNV 57
           +AVL+GG S+EREVSL+SG A  +AL   G+    ID        +A+LK D     FN+
Sbjct: 8   IAVLLGGTSAEREVSLNSGAAVLNALVSQGYNAHGIDPKE---YNVANLKADGFDRVFNI 64

Query: 58  LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---N 114
           LHG  GEDG +Q +LE + +PYT  G++ASAL+MDKMR+K +  + G+PV    +V   N
Sbjct: 65  LHGRGGEDGTMQGLLEQIGLPYTGCGVMASALTMDKMRTKMLWKAFGLPVADMEIVTKEN 124

Query: 115 RFTMDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
              ++ Q ++     P ++KP   GSS+G+  +K  + +   +  +  ++  + +LIE++
Sbjct: 125 ANELNPQAVVEKLGLPLMVKPSLEGSSVGLTKVKAVEELKSAVDYALKFD--NTILIEEW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G ELT  V+G   L    I VP+ +FY Y+ KY S N+ +  PA + ++  +E+ +L 
Sbjct: 183 LAGDELTVPVLGGEVLPAVRI-VPEGEFYDYDAKYISDNTQYFCPAGLSVEREQELAKLV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWL-EINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             A+  +GCRG SR D + D  ++  F L E+N  PGMT  S+FP+ A+  G SF +L++
Sbjct: 242 KRAYDVVGCRGWSRIDVMTD--AQGNFRLVEVNTNPGMTSHSLFPKSASTVGISFEQLVV 299

Query: 291 WMVE 294
            ++E
Sbjct: 300 KILE 303


>gi|296327762|ref|ZP_06870301.1| D-alanine--D-alanine ligase [Fusobacterium nucleatum subsp.
           nucleatum ATCC 23726]
 gi|296155109|gb|EFG95887.1| D-alanine--D-alanine ligase [Fusobacterium nucleatum subsp.
           nucleatum ATCC 23726]
          Length = 287

 Score =  183 bits (464), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 111/300 (37%), Positives = 169/300 (56%), Gaps = 25/300 (8%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59
           +AV MGG SSE+E+SL SG+A   +L+  G+    + +D R+          DLA+ VLH
Sbjct: 3   IAVFMGGTSSEKEISLKSGEAVLESLQKQGYDAYGVILDERNQVSAFVDNDYDLAYLVLH 62

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL----VNR 115
           G  GE+G +QA+L++L   YT SG+LASA++MDK ++KQ+  S G+    S      + R
Sbjct: 63  GGNGENGKIQAVLDILGKKYTGSGVLASAITMDKDKTKQIAQSVGIKTPKSYRTVEEIER 122

Query: 116 FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175
           F          P +IKP+  GSS G+ +    +     + + +      + +IE Y+ G 
Sbjct: 123 F----------PVIIKPVDEGSSKGLFLCNNKEEAEEAVKKLA------KPIIEDYIIGE 166

Query: 176 ELTCGVMGDASLDVTEIAVPKSD-FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
           ELT GV+   +L V +I +P++D  Y Y+ KY+   S H  PAKI    YKE  ++A   
Sbjct: 167 ELTVGVLNGEALGVLKI-IPQADVLYDYDSKYAKGGSVHEFPAKIENKSYKEAMKIAEKI 225

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           H   G +GISRSDF+      ++++LE+N  PGMT  S+ P++A   GYSF +++   VE
Sbjct: 226 HSEFGMKGISRSDFILS--EGELYFLEVNSSPGMTKTSLIPDLATLKGYSFDDVVRITVE 283


>gi|256027423|ref|ZP_05441257.1| D-alanine--D-alanine ligase [Fusobacterium sp. D11]
 gi|289765386|ref|ZP_06524764.1| D-alanine-D-alanine ligase [Fusobacterium sp. D11]
 gi|289716941|gb|EFD80953.1| D-alanine-D-alanine ligase [Fusobacterium sp. D11]
          Length = 287

 Score =  183 bits (464), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 112/301 (37%), Positives = 170/301 (56%), Gaps = 27/301 (8%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL--KPDLAFNVL 58
           +AV MGG SSE+E+SL SG+A   +L+  G+    + +D     V A L  + DLA+ VL
Sbjct: 3   IAVFMGGTSSEKEISLKSGEAVLESLKKQGYDAYGVILDEK-NQVTAFLDNEYDLAYLVL 61

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL----VN 114
           HG  GE+G +QA+L++L   YT SG+LASA++MDK ++KQ+  S G+ V  +      + 
Sbjct: 62  HGGNGENGKIQAVLDILGKKYTGSGVLASAITMDKDKTKQIAQSVGIKVPKAYRTVEKIE 121

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
           RF          P +IKP+  GSS G+ +    +          +     + +IE Y+ G
Sbjct: 122 RF----------PVIIKPVDEGSSKGVFLCNNREE------AEEAVKRLARPIIEDYIVG 165

Query: 175 IELTCGVMGDASLDVTEIAVPKSD-FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
            ELT GV+   +L V +I +P++D  Y Y+ KY+   S H  PAKI    YKE  ++A  
Sbjct: 166 EELTVGVLNGKALGVLKI-IPQADVLYDYDSKYADGGSIHEFPAKIEDKSYKEAMKIAEK 224

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            H   G +GISRSDF+      ++++LE+N  PGMT  S+ P++A   GY+F +++   V
Sbjct: 225 VHSEFGMKGISRSDFILS--DGELYFLEVNSSPGMTKTSLIPDLATLKGYTFDDVVRITV 282

Query: 294 E 294
           E
Sbjct: 283 E 283


>gi|19704786|ref|NP_604348.1| D-alanine--D-alanine ligase [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
 gi|39930908|sp|Q8RDQ4|DDL_FUSNN RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|19715123|gb|AAL95647.1| D-alanine--D-alanine ligase [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
          Length = 287

 Score =  183 bits (464), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 111/300 (37%), Positives = 169/300 (56%), Gaps = 25/300 (8%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59
           +AV MGG SSE+E+SL SG+A   +L+  G+    + +D R+          DLA+ VLH
Sbjct: 3   IAVFMGGTSSEKEISLKSGEAVLESLQKQGYDAYGVILDERNQVSAFVDNDYDLAYLVLH 62

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL----VNR 115
           G  GE+G +QA+L++L   YT SG+LASA++MDK ++KQ+  S G+    S      + R
Sbjct: 63  GGNGENGKIQAVLDILGKKYTGSGVLASAITMDKDKTKQIAQSVGIKTPKSYRPVEEIER 122

Query: 116 FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175
           F          P +IKP+  GSS G+ +    +     + + +      + +IE Y+ G 
Sbjct: 123 F----------PVIIKPVDEGSSKGLFLCNNKEEAEEAVKKLA------KPIIEDYIIGE 166

Query: 176 ELTCGVMGDASLDVTEIAVPKSD-FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
           ELT GV+   +L V +I +P++D  Y Y+ KY+   S H  PAKI    YKE  ++A   
Sbjct: 167 ELTVGVLNGEALGVLKI-IPQADVLYDYDSKYAKGGSVHEFPAKIENKSYKEAMKIAEKI 225

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           H   G +GISRSDF+      ++++LE+N  PGMT  S+ P++A   GYSF +++   VE
Sbjct: 226 HSEFGMKGISRSDFILS--EGELYFLEVNSSPGMTKTSLIPDLATLKGYSFDDVVRITVE 283


>gi|254994730|ref|ZP_05276920.1| D-alanine--D-alanine ligase (ddlB) [Anaplasma marginale str.
           Mississippi]
          Length = 334

 Score =  183 bits (464), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 112/299 (37%), Positives = 174/299 (58%), Gaps = 7/299 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-SVGLVLAHLKPDLAFNVLH 59
           +AVL GG S EREVSL+ GK  A AL   G+  + +D++R SVG +LA + PDL +N LH
Sbjct: 14  VAVLCGGSSPEREVSLAGGKRVADALGRLGYNATVLDLNRESVGQLLA-MAPDLVYNALH 72

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-SILVNRFTM 118
           G  GEDG V  +L++L +  THS + AS++ MDK+ +K V+ S G+      +L     +
Sbjct: 73  GVQGEDGCVSGLLDILGLACTHSHVAASSVGMDKVLTKHVLKSLGIDFPKFDVLTKEELL 132

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            ++ ++  P+VIKP++GGS++G+  I   +S  LD L + +    D++++E+YV G E+ 
Sbjct: 133 SAKEVLPYPFVIKPVRGGSTIGVHAIFS-KSEYLD-LSAHADTLEDRMIVEEYVSGQEVQ 190

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             V    ++   E+   +   YSY+ KY      H+ PA +P DIY      A   HQ +
Sbjct: 191 TAVFLGRAIGTMELLF-EGRIYSYDAKYVEGLCEHIFPANLPHDIYSLTLEWALKLHQCL 249

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPE-MAAYAGYSFRELLLWMVEDA 296
           GC+ +SR DF +D  ++ +  LEIN  PGMT  S  PE +    G +F  ++  +V+DA
Sbjct: 250 GCKTLSRVDFRYDVANKALKLLEINTHPGMTVSSTLPEVLWLRCGLNFDHVVDLIVQDA 308


>gi|237743964|ref|ZP_04574445.1| D-alanine-D-alanine ligase [Fusobacterium sp. 7_1]
 gi|229432995|gb|EEO43207.1| D-alanine-D-alanine ligase [Fusobacterium sp. 7_1]
          Length = 287

 Score =  182 bits (462), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 112/301 (37%), Positives = 172/301 (57%), Gaps = 27/301 (8%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL--KPDLAFNVL 58
           +AV MGG SSE+E+SL SG+A   +L+  G+    + +D     V A L  + DLA+ VL
Sbjct: 3   IAVFMGGTSSEKEISLKSGEAVLESLKKQGYDAYGVILDEK-NQVTAFLDNEYDLAYLVL 61

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL----VN 114
           HG  GE+G +QA+L++L   YT SG+LASA++MDK ++KQ+  S G+ V  +      + 
Sbjct: 62  HGGNGENGKIQAVLDILGKKYTGSGVLASAITMDKDKTKQIAQSVGIRVPKAYRTVEEIE 121

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
           RF          P +IKP+  GSS G+ +    +     + + +      + +IE Y+ G
Sbjct: 122 RF----------PVIIKPVDEGSSKGVFLCNNREEAEEAVKKLA------RPIIEDYIVG 165

Query: 175 IELTCGVMGDASLDVTEIAVPKSD-FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
            ELT GV+   +L V +I +P++D  Y Y+ KY+   S H  PAKI    YKE  ++A  
Sbjct: 166 EELTVGVLNGKALGVLKI-IPQADVLYDYDSKYADGGSIHEFPAKIEDKSYKEAMKIAEK 224

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            H   G +GISRSDF+      ++++LE+N  PGMT  S+ P++A   GY+F +++   V
Sbjct: 225 VHSEFGMKGISRSDFILS--DGELYFLEVNSSPGMTKTSLIPDLATLKGYTFDDVVRITV 282

Query: 294 E 294
           E
Sbjct: 283 E 283


>gi|94263585|ref|ZP_01287395.1| D-alanine--D-alanine ligase [delta proteobacterium MLMS-1]
 gi|93456005|gb|EAT06156.1| D-alanine--D-alanine ligase [delta proteobacterium MLMS-1]
          Length = 314

 Score =  182 bits (462), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 110/295 (37%), Positives = 170/295 (57%), Gaps = 15/295 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP-DLAFNVLH 59
           +A+L GG S+EREVSLS       AL  + +++ + D    +  + A     D+AF +LH
Sbjct: 9   VALLAGGKSAEREVSLSGAAGVEKALAGSRYRLRRYDPATDLPRLAADAASIDVAFVLLH 68

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G  GEDG +Q  L+LL IPY  SG+L SAL+MDK  +K++    G+ V    +     + 
Sbjct: 69  GTLGEDGTIQGFLDLLGIPYQGSGVLGSALAMDKDLAKELYRLAGLKVPAWEMARPADIA 128

Query: 120 SQH----LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175
             H    L+SPP V+KP++ GSSLG+ ++  ++ +   L   +++ H DQ+++EQ+V G 
Sbjct: 129 EPHRLLALLSPPLVVKPVRQGSSLGMSIVDAEEELAPAL--ETAFAHDDQVMVEQFVAGR 186

Query: 176 ELTCGVMGD---ASLDVTEIAVPKSD--FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
           E+T GV+G+    +L V EI +P     F+ Y+ KY    S  V PA++P  +  +VQ  
Sbjct: 187 EVTGGVLGNDQLTALPVVEI-IPGEQYRFFDYQAKYQPGASREVCPAELPPAVTAQVQEW 245

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285
           A  AH+A+  +G SR+D +    +  ++ LE N  PGMTP S+FP+ AA  G  F
Sbjct: 246 ACRAHRALRLKGYSRTDMIL--AADGLYVLETNTIPGMTPTSLFPQAAAAHGLDF 298


>gi|262380535|ref|ZP_06073689.1| D-alanine-D-alanine ligase B [Acinetobacter radioresistens SH164]
 gi|262297981|gb|EEY85896.1| D-alanine-D-alanine ligase B [Acinetobacter radioresistens SH164]
          Length = 311

 Score =  182 bits (462), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 111/300 (37%), Positives = 174/300 (58%), Gaps = 14/300 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-VDRSVGLVLAHLKPDLAFNVLH 59
           +AVL+GG S+EREVSL SG+A   AL  +G +    D  +R V  ++ +   D AF VLH
Sbjct: 10  VAVLLGGKSAEREVSLDSGRAVLEALIRSGVEAEAFDPQERCVTELVNY---DRAFIVLH 66

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G  GEDG +Q +LE L IPYT +G+  SA+ MDK+++KQV     +P  P  +V++   D
Sbjct: 67  GRGGEDGQIQGVLEWLNIPYTGTGVQGSAIGMDKIKTKQVWQGSELPTAPHRIVSK-DAD 125

Query: 120 SQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
           +  +I+    P++IKP+  GSS+G+  ++K +  P  L +++   H   ++ E++++G E
Sbjct: 126 ADEVIASLGLPFIIKPVHEGSSIGMSKVEKPEDFPEALAKATE--HDAVVMAEKWINGRE 183

Query: 177 LTCGVMGDASLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
            T  ++   +L V  +  PK   FY YE KY+  +  + +P  +     K +Q LA  A 
Sbjct: 184 FTIVLLNGQALPVIRLEPPKDVAFYDYEAKYNRNDVQYGIPCGLSEAEEKMLQELALRAF 243

Query: 236 QAIGCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           QA+GC+G  R D + D   +  FW LE+N  PGMT  S+ P+ A   GY F +L + ++E
Sbjct: 244 QAVGCKGWGRIDAMQD--EQGNFWLLEVNTVPGMTSHSLVPKAAKAVGYDFDQLCVTILE 301


>gi|312173520|emb|CBX81774.1| D-alanine-D-alanine ligase [Erwinia amylovora ATCC BAA-2158]
          Length = 306

 Score =  182 bits (462), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 110/303 (36%), Positives = 164/303 (54%), Gaps = 13/303 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+ER+VSL SG      L++AG     +D+       L     + AF  LHG
Sbjct: 5   VAVLLGGTSAERDVSLLSGTXVLKGLQEAGIDAYPVDIRDFPVTRLKEEGFEKAFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119
             GEDG +Q +LE L IPYT SG++ASA++MDK+RSK +   CG+PV P + + R  MD 
Sbjct: 65  RGGEDGTLQGVLEFLNIPYTGSGVMASAITMDKLRSKYLWQGCGLPVSPFVALTRAQMDA 124

Query: 120 --------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                   S   +  P  +KP + GSS+GI  + +   +   L ++  ++H  ++L+E +
Sbjct: 125 GLDAQVMASIAALGLPLFVKPSREGSSVGISRVNQASELQAALEEAFRFDH--EVLVEAF 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T GV+G   L    I    S+FY Y+ KY S  + +  P+ +  D   E++ L 
Sbjct: 183 LSGPEYTVGVLGTDILPSIRIQT-ASEFYDYDAKYFSDETQYFCPSGLSADQEAELRELT 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A  A+GC G  R D +     R  + LE+N  PGMT  S+ P  A  AG SF +L+  
Sbjct: 242 ISAWNALGCSGWGRVDVMMGGDGR-FYLLEVNTSPGMTSHSLVPMAAKQAGMSFSQLVAR 300

Query: 292 MVE 294
           ++E
Sbjct: 301 ILE 303


>gi|260495138|ref|ZP_05815266.1| D-alanine-D-alanine ligase [Fusobacterium sp. 3_1_33]
 gi|260197195|gb|EEW94714.1| D-alanine-D-alanine ligase [Fusobacterium sp. 3_1_33]
          Length = 287

 Score =  182 bits (462), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 110/300 (36%), Positives = 171/300 (57%), Gaps = 25/300 (8%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59
           +AV MGG SSE+E+SL SG+A   +L+  G+    + +D R+        + DLA+ VLH
Sbjct: 3   IAVFMGGTSSEKEISLKSGEAVLESLKKQGYDAYGVVLDERNQVTAFLDNEYDLAYLVLH 62

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL----VNR 115
           G  GE+G +QA+L++L   YT SG+LASA++MDK ++KQ+  S G+ V  +      + R
Sbjct: 63  GGNGENGKIQAVLDILGKKYTGSGVLASAITMDKDKTKQIAQSVGIRVPKAYRTVEEIER 122

Query: 116 FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175
           F          P +IKP+  GSS G+ +    +     + + +      + +IE Y+ G 
Sbjct: 123 F----------PVIIKPVDEGSSKGVFLCNNREEAEEAVKKLA------RPIIEDYIVGE 166

Query: 176 ELTCGVMGDASLDVTEIAVPKSD-FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
           ELT GV+   +L V +I +P++D  Y Y+ KY+   S H  PAKI    YKE  ++A   
Sbjct: 167 ELTVGVLNGKALGVLKI-IPQADVLYDYDSKYADGGSIHEFPAKIEDKSYKEAMKIAEKV 225

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           H   G +GISRSDF+      ++++LE+N  PGMT  S+ P++A   GY+F +++   VE
Sbjct: 226 HSEFGMKGISRSDFILS--DGELYFLEVNSSPGMTKTSLIPDLATLKGYTFDDVVRITVE 283


>gi|332160414|ref|YP_004296991.1| D-alanine--D-alanine ligase [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|318607125|emb|CBY28623.1| D-alanine--D-alanine ligase B [Yersinia enterocolitica subsp.
           palearctica Y11]
 gi|325664644|gb|ADZ41288.1| D-alanine--D-alanine ligase [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|330859328|emb|CBX69675.1| D-alanine--D-alanine ligase [Yersinia enterocolitica W22703]
          Length = 306

 Score =  182 bits (461), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 113/299 (37%), Positives = 168/299 (56%), Gaps = 15/299 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL SG+A  + L +AG     ID        L     D  F  LHG
Sbjct: 5   VAVLLGGTSAEREVSLLSGEAVLAGLREAGIDAHGIDTKDFPVTQLKEQGFDKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---FT 117
             GEDG +Q +LE L++PYT SG++ASAL+MDK+R+K V  + G+P+ P + +NR    T
Sbjct: 65  RGGEDGTLQGVLEFLQLPYTGSGVMASALTMDKLRTKLVWQASGLPISPYVALNRQQFET 124

Query: 118 MDSQHL------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
           + S+ L      +  P ++KP   GSS+G+   K DQ+  L      ++ H   +LIE++
Sbjct: 125 LSSEELAACVAKLGLPLIVKPSHEGSSVGM--SKVDQANQLHSALVEAFRHDTDVLIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L    I  P   FY YE KY S  + +  P+ +  ++ +++  L+
Sbjct: 183 LSGPEFTVAILGNDVLPSIRIQAPGV-FYDYEAKYLSDETQYFCPSGLSSELEQQLAALS 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
             A+QA+GC G  R D + D  S   F+ LE+N  PGMT  S+ P  A   G SF +L+
Sbjct: 242 LQAYQALGCSGWGRVDVMQD--SDGCFYLLEVNTSPGMTSHSLVPMAARQHGLSFSQLV 298


>gi|329298861|ref|ZP_08256197.1| D-alanine--D-alanine ligase [Plautia stali symbiont]
          Length = 306

 Score =  182 bits (461), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 113/303 (37%), Positives = 166/303 (54%), Gaps = 13/303 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG S+EREVSL SG A  + L + G     +D      L L       AF  LHG
Sbjct: 5   VAVLMGGTSAEREVSLMSGSAVLAGLREMGIDAHGVDTRDVSVLDLWQQGFAKAFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR----- 115
             GEDG +QA+LE L++PYT SG++ASA++MDK+RSK +    G+P    + + R     
Sbjct: 65  RGGEDGTLQALLEFLQLPYTGSGVMASAITMDKLRSKLLWQGRGLPAGKFVWLTRQQYEQ 124

Query: 116 -FTMDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                +Q  I+    P  +KP   GSS+GI  + + +++P  L +  ++ H D +L+E +
Sbjct: 125 GLDASAQASIAALGLPLFVKPSCEGSSVGISRVNQAEALPAALQE--AFRHDDDVLVEAF 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T G++GD  L    I    S+FY YE KY S ++ +  P+ +  +   E+Q L 
Sbjct: 183 LSGAEYTVGIVGDEILPSIRIQTA-SEFYDYEAKYISDDTQYFCPSGLSAEKEAELQTLV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A +A+GC G  R D + D        LE+N  PGMT  S+ P  A  AGYSF +L+  
Sbjct: 242 LAAWRALGCSGWGRVDVMVDG-DGNFQLLEVNTSPGMTSHSLVPMAAKQAGYSFPQLVAR 300

Query: 292 MVE 294
           ++E
Sbjct: 301 ILE 303


>gi|91786975|ref|YP_547927.1| D-alanine--D-alanine ligase [Polaromonas sp. JS666]
 gi|123165280|sp|Q12EL3|DDL_POLSJ RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|91696200|gb|ABE43029.1| D-alanine--D-alanine ligase [Polaromonas sp. JS666]
          Length = 338

 Score =  182 bits (461), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 108/308 (35%), Positives = 175/308 (56%), Gaps = 21/308 (6%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-VDRSVGLVLAHLKPD---LAFN 56
           +AVLMGG+S+ERE+SL SG+    AL   G      D  +R +    + LK D     F 
Sbjct: 24  VAVLMGGMSAEREISLMSGRGVLQALRSRGVDAHAFDPAERDI----SELKKDEFARCFI 79

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116
            LHG FGEDG VQ  LELL IPYT SG++AS++++DK+ +K+V+ + G+P    +L+ R 
Sbjct: 80  ALHGRFGEDGTVQGALELLGIPYTGSGVMASSMAIDKVMTKRVMLAEGLPTPTYVLLRRG 139

Query: 117 TMDSQHL------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +  S  +      +  P ++KP + GSS+G+  + +   +   + Q+   +    +L EQ
Sbjct: 140 SYGSADVSAVPDKLGLPLIVKPAREGSSIGLTKVTERAGMADAVAQAEKLDA--DILCEQ 197

Query: 171 YVDGIELTCGVMGDAS----LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE 226
           ++ G E+TC V+G  S    L V  I  P  + Y Y+ KY +  + +++P  +P      
Sbjct: 198 FISGDEVTCPVLGTGSEARALPVIRIVAPDGN-YDYQNKYFTDTTQYLVPCGLPEGEEAV 256

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           +Q+L   A++ + CRG +R+D + D ++RK + LEIN  PGMT  S+ P  A  AG S+ 
Sbjct: 257 IQQLVLQAYRTLNCRGWARADVMIDKVTRKPYLLEINTSPGMTGHSLVPMSARAAGISYE 316

Query: 287 ELLLWMVE 294
           +L + +++
Sbjct: 317 DLCIEVLK 324


>gi|300715310|ref|YP_003740113.1| D-alanine-D-alanine ligase [Erwinia billingiae Eb661]
 gi|299061146|emb|CAX58253.1| D-alanine-D-alanine ligase [Erwinia billingiae Eb661]
          Length = 306

 Score =  182 bits (461), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 110/303 (36%), Positives = 166/303 (54%), Gaps = 13/303 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL SG A  + L +AG     +D+     + L     D AF  LHG
Sbjct: 5   VAVLLGGTSAEREVSLMSGNAVLAGLIEAGVDAHAVDIRDFPVMRLKEEGFDKAFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LE L IPYT SG++ASA++MDK+R+K +   CG+PV P + + R  MD+
Sbjct: 65  RGGEDGTLQGVLEFLSIPYTGSGVMASAITMDKLRTKFLWQGCGLPVSPYVALTRKEMDA 124

Query: 121 Q---------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P  +KP   GSS+GI  +    ++   L++  ++ H D +L+E +
Sbjct: 125 GLTPETEAKIAALGLPVFVKPSCEGSSVGISRVNSADTLQAALVE--AFRHDDDVLVEAF 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  V+GD  L    I V  S+FY YE KY S ++ +  P+ +  +   E+  + 
Sbjct: 183 LSGPEYTVAVIGDEILPSIRIKV-VSEFYDYEAKYFSDDTEYFCPSGLSAEQEAELSDIV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A +A+GC G  R D +      + + LE+N  PGMT  S+ P     AG SF +L+  
Sbjct: 242 IKAWRALGCSGWGRVDVMMGG-DGQFYLLEVNTSPGMTGHSLVPMAGKQAGLSFSQLVAR 300

Query: 292 MVE 294
           ++E
Sbjct: 301 ILE 303


>gi|308234070|ref|ZP_07664807.1| D-alanine--D-alanine ligase [Atopobium vaginae DSM 15829]
 gi|328943467|ref|ZP_08240932.1| D-alanine-D-alanine ligase [Atopobium vaginae DSM 15829]
 gi|327491436|gb|EGF23210.1| D-alanine-D-alanine ligase [Atopobium vaginae DSM 15829]
          Length = 317

 Score =  182 bits (461), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 119/308 (38%), Positives = 173/308 (56%), Gaps = 16/308 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFK-VSQIDV-DRSVGLVLAHLKPDLAFNVL 58
           +AVL GG S E ++SL SG  C  AL+ AGF  V   DV D S    LA  + D+AF  +
Sbjct: 11  IAVLAGGWSDEAQISLQSGTECVKALKTAGFTTVEMFDVKDLSFIQRLAAHEFDIAFVAM 70

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-SILVNRFT 117
           HG +GEDG +Q +LE+L IPYT SG+LASA+   K  +K    + G+P    + L +   
Sbjct: 71  HGRYGEDGCIQGLLEILHIPYTCSGVLASAMGTAKDIAKLAYENAGIPTPKDACLASDDE 130

Query: 118 MDS---QHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
           +D    QH++     P  +KP   GSS G+  +++ + +  D ++      G  +LIEQ 
Sbjct: 131 IDKNVVQHIVDKLGLPLFVKPTDNGSSFGVFKVEEQKDL-ADAIKEEQKT-GTHVLIEQA 188

Query: 172 VDGIELTCGVMGD---ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           + G E+T  V+G+    +L + EI V  + FY  + K       HV+PA++  D+Y   Q
Sbjct: 189 IVGTEITVPVIGNHHPHALPIVEI-VFNAPFYDIQAKAEPAPLHHVIPARLDKDVYAHAQ 247

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
            LA  AH A+GCRG+SR+DF+ D  +   + LE N+ PGMT  S+ P+ AA+ G  F EL
Sbjct: 248 ELAEQAHVALGCRGVSRTDFIVDE-NGVPYALETNIIPGMTERSLIPDSAAHEGMGFPEL 306

Query: 289 LLWMVEDA 296
              +VE A
Sbjct: 307 CKRLVEYA 314


>gi|260220018|emb|CBA27135.1| D-alanine--D-alanine ligase [Curvibacter putative symbiont of Hydra
           magnipapillata]
          Length = 312

 Score =  182 bits (461), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 113/304 (37%), Positives = 165/304 (54%), Gaps = 11/304 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG S+EREVSL SG     AL   G      D        L     D  F  LHG
Sbjct: 6   VAVLMGGASAEREVSLMSGSGVLKALRSQGVDAHAFDPSERALDELKREGFDRCFIALHG 65

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV--PVCPSILVNRFTM 118
            FGEDG VQ  LELL IPYT SG++AS++SMDK+ +K++    G+  P    +     T 
Sbjct: 66  RFGEDGTVQGALELLGIPYTGSGVMASSISMDKVMTKRIWRFEGLSTPAWQQVKSAAETQ 125

Query: 119 DSQHLISPPYVIKPLKGGSSLGII-VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            +   +  P ++KP + GSS+G   V+  DQ    D   + +  H   +L EQ++ G E+
Sbjct: 126 AAFAALGAPMIVKPAREGSSIGFTKVMSADQ---CDAAYALASQHDSHVLCEQFIAGDEV 182

Query: 178 TCGVMGDAS----LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           TC V G +S    L V  I  P+ + Y Y+ KY +  + +++PA +P    + +Q L   
Sbjct: 183 TCPVWGPSSAPEALPVIRIVAPEGN-YDYQNKYFTDTTQYLVPAGLPAGEEEAIQALVCK 241

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           A+Q +GCRG +R+D + D  +R  + LEIN  PGMT  S+ P  A+ AG S+ EL + ++
Sbjct: 242 AYQVLGCRGWARADVMIDAKTRTPYLLEINTSPGMTGHSLVPMSASAAGISYEELCVRLL 301

Query: 294 EDAS 297
           +  +
Sbjct: 302 QSTA 305


>gi|188996366|ref|YP_001930617.1| D-alanine/D-alanine ligase [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188931433|gb|ACD66063.1| D-alanine/D-alanine ligase [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 299

 Score =  181 bits (460), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 105/302 (34%), Positives = 172/302 (56%), Gaps = 14/302 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---DRSVGLVLAHLKPDLAFNV 57
           +A+L GG S ERE+S+ SGKA   AL   G+     D+   D+ +  +L + KPDLAF V
Sbjct: 4   IALLYGGYSREREISIKSGKAVEKALNQLGYDYKVFDIIERDKFIKEILEY-KPDLAFIV 62

Query: 58  LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117
           LHG  GEDG +QAILE L IPYT S +  S ++MDK+ +K  + +  +P    I    FT
Sbjct: 63  LHGKGGEDGTIQAILEFLGIPYTGSDMKTSVIAMDKVLTKMYLKNFDIPTPDWIF---FT 119

Query: 118 MDSQHL-ISP--PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
            + + L   P  P V+K    GSS+G+ ++   Q    +      +N  D++LIE+++ G
Sbjct: 120 EEKEALNYRPDFPAVVKAPTEGSSIGVYIVNNQQE--YENAVKEVFNLDDKVLIEKFIKG 177

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
            ELT  ++ D   D+ E+ V +  FY +  KY +  + ++ PA++  D+YK VQ L    
Sbjct: 178 RELTVSILDDEVFDIVEVVVSEG-FYDFNNKYITGKTQYICPAQLDEDVYKNVQGLGHKV 236

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           ++ + C+G +R D + +   +  + LE+N  PGMT  S+ P+ A+  G +F +L+  +++
Sbjct: 237 YKLLNCKGPARVDIILEN-DKNPYVLEVNTIPGMTEFSLLPKAASARGITFNQLVEKIIK 295

Query: 295 DA 296
           ++
Sbjct: 296 NS 297


>gi|269137997|ref|YP_003294697.1| D-alanine--D-alanine ligase [Edwardsiella tarda EIB202]
 gi|267983657|gb|ACY83486.1| D-alanine--D-alanine ligase [Edwardsiella tarda EIB202]
 gi|304558044|gb|ADM40708.1| D-alanine--D-alanine ligase B [Edwardsiella tarda FL6-60]
          Length = 306

 Score =  181 bits (460), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 111/303 (36%), Positives = 170/303 (56%), Gaps = 13/303 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+ER+VSL SG+A  + L++AG     +D  R     L     +  F  LHG
Sbjct: 5   VAVLLGGTSAERDVSLLSGQAVLNGLKEAGIDAYPVDTMRFPATQLREAGFERVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR----- 115
             GEDG +Q +LE L++PYT SG++ASAL+MDK+RSKQV  + G+PV P + ++R     
Sbjct: 65  RGGEDGTLQGVLEFLQLPYTGSGVMASALTMDKLRSKQVWQAAGLPVAPYVAISREQFDE 124

Query: 116 -FTMDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
             TMD+   I+    P ++KP + GSS+G+   K  +    D     +  H D++LIE++
Sbjct: 125 GLTMDTLREINDLGLPLIVKPSREGSSVGM--SKVSEPCEFDPALVEALRHDDEILIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T   +GD  L    I    + FY YE KY S  + +  P+ +  +  + +  L 
Sbjct: 183 LAGPEYTVAFIGDEILPSIRIQAAGA-FYDYEAKYLSDKTEYFCPSGLSDEQEQALAALV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A++A+GC G  R D + D  + +   LE+N  PGMT  S+ P  A  AG  F +L++ 
Sbjct: 242 RRAYKALGCSGWGRVDVMQDA-AGEFCLLEVNTAPGMTSHSLVPMAARQAGMRFSQLVVR 300

Query: 292 MVE 294
           ++E
Sbjct: 301 ILE 303


>gi|291615171|ref|YP_003525328.1| D-alanine/D-alanine ligase [Sideroxydans lithotrophicus ES-1]
 gi|291585283|gb|ADE12941.1| D-alanine/D-alanine ligase [Sideroxydans lithotrophicus ES-1]
          Length = 309

 Score =  181 bits (460), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 117/304 (38%), Positives = 173/304 (56%), Gaps = 18/304 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL SG A  +AL  +G      D  +     L   K D  F +LHG
Sbjct: 12  VAVLFGGRSAEREVSLKSGAAVLAALLKSGVDAHAFDPAQRDLSELKKEKFDRVFIILHG 71

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV-------CPSILV 113
            +GEDG VQ  LEL++IPYT SG++ASA++MDK R+K V  + G+P+        PS   
Sbjct: 72  RYGEDGTVQGALELMDIPYTGSGVMASAIAMDKWRTKLVWQAAGLPIPEYEALTAPS--- 128

Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI-EQYV 172
             +   + HL  P +V KP   GSS+G+  +K    +P+   +++ +   D+++I E ++
Sbjct: 129 -DWNAVADHLDLPLFV-KPSSEGSSVGVTKVKTVDELPIAYAEAAKY---DKVVIAESFM 183

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G E T  ++   +L V +I  P ++FY YE KY   ++ ++ P  + ++   E+Q LA 
Sbjct: 184 SGGEYTATILNGRALPVIKIE-PANEFYDYEAKYLRDDTRYLCPCGLSVEQEAEMQHLAL 242

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           LA Q IGC+G  R DFL      K + LEIN  PGMT  S+ P  A  AG SF +L++ +
Sbjct: 243 LAFQLIGCQGWGRVDFLRGD-DGKFYLLEINTAPGMTDHSLVPMAARQAGISFEQLVVQI 301

Query: 293 VEDA 296
           +E A
Sbjct: 302 LEGA 305


>gi|317493277|ref|ZP_07951699.1| D-alanine-D-alanine ligase [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316918670|gb|EFV40007.1| D-alanine-D-alanine ligase [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 306

 Score =  181 bits (460), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 108/306 (35%), Positives = 170/306 (55%), Gaps = 13/306 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL SG+A    L +AG     +D+       L     D  F  LHG
Sbjct: 5   VAVLLGGTSAEREVSLQSGQAVLKGLIEAGIDAHPVDIKDFPATQLKDAGYDKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119
             GEDG +Q +LE L++PYT SG++ASAL+MDK+R+K V  + G+PV P + ++R   D 
Sbjct: 65  RGGEDGTLQGVLEFLQLPYTGSGVMASALTMDKLRTKLVWQASGLPVSPFVAISRAQFDE 124

Query: 120 --SQHLISP------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
             +Q ++        P ++KP + GSS+G+  +         L++  ++ H D +L+E++
Sbjct: 125 GLTQEMLVALNALGLPLIVKPSREGSSVGMSKVSDASEFDDALVE--AFRHDDDVLVEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T   +G+  L    I  P   FY YE KY S  + +  P+ +  D  +E+  LA
Sbjct: 183 LSGPEYTVAFLGEEILPSIRIQAPGV-FYDYEAKYLSDKTEYFCPSGLSEDRERELAELA 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A++++ C G  R D + D    + + LE+N  PGMT  S+ P  A  +G SF +L+  
Sbjct: 242 RKAYKSLDCSGWGRVDVMMDS-DGEFYLLEVNTAPGMTSHSLVPMAARQSGLSFSQLVAR 300

Query: 292 MVEDAS 297
           ++E A+
Sbjct: 301 ILELAN 306


>gi|30248997|ref|NP_841067.1| D-alanine--D-alanine ligase [Nitrosomonas europaea ATCC 19718]
 gi|39930869|sp|Q82VS0|DDL_NITEU RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|30138614|emb|CAD84905.1| D-alanine--D-alanine ligase [Nitrosomonas europaea ATCC 19718]
          Length = 305

 Score =  181 bits (460), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 111/300 (37%), Positives = 169/300 (56%), Gaps = 14/300 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP---DLAFNV 57
           +AVL+GG S+ERE+SL SG+A  +AL+ +       D     G  L +L     D  F  
Sbjct: 9   VAVLLGGRSAEREISLRSGQAVLAALQRSRVNAHAFD---PAGQPLENLLQQGFDRVFIA 65

Query: 58  LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--- 114
           LHG +GEDG VQ  LEL+E+PYT SGILASAL+MDK R+K +  + G+     ++++   
Sbjct: 66  LHGRYGEDGSVQGALELMELPYTGSGILASALAMDKWRTKMIWQAAGINTPDYVMLDASS 125

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
           RF  D    +  P +IKP + GS+LG+  +  +Q        ++ ++    +L EQ++ G
Sbjct: 126 RFR-DVADRLGLPLIIKPAREGSTLGLNKVDNEQDFRSAYQAAAEYD--SLVLAEQFIQG 182

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
           IELT  ++ D  L +  I V +   Y Y+ KY S ++ +  P+ +   +   +Q  A  A
Sbjct: 183 IELTAAILDDMPLPLVRIDVAEG-LYDYQAKYFSESTRYTCPSGLSAALTTRIQEQALYA 241

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           H+ +GC G SR D + D  + + F+LE N  PGMT  S+ P  A  AG SF EL++ ++E
Sbjct: 242 HRILGCTGWSRVDLILDE-NEQPFFLETNTSPGMTDHSLVPMAAKAAGISFDELVVQILE 300


>gi|15605989|ref|NP_213366.1| D-alanine:D-alanine ligase [Aquifex aeolicus VF5]
 gi|6225246|sp|O66806|DDL_AQUAE RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|2983164|gb|AAC06765.1| D-alanine:D-alanine ligase [Aquifex aeolicus VF5]
          Length = 291

 Score =  181 bits (459), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 105/294 (35%), Positives = 178/294 (60%), Gaps = 15/294 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VLMGG SSERE+SL +GKA A AL + G +V ++D+D+ +   L  +KPD  F  LHG
Sbjct: 3   VVVLMGGRSSEREISLKTGKAVAKALRELGHEVYELDLDKELPCKLLEIKPDKVFIALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV--PVCPSILVNRFTM 118
            +GEDG VQ +LE+L+IPYT S  +ASA+S+DK  +K++V S G+  P   + +     +
Sbjct: 63  RYGEDGTVQGLLEILDIPYTGSDTIASAVSIDKDFTKRIVKSLGINTPDWETFISEGDVL 122

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP---LDLLQSSSWNHGDQLLIEQYVDGI 175
           +++     P V+KP++ GSS+G+ +++  + +    LDLL+ +     +++++E++V+G 
Sbjct: 123 NTEW-NKFPAVVKPVREGSSVGLKIVESLEELKEYALDLLKKT-----ERVMVEEFVEGR 176

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
           ++T G++   +L V EI +PK   Y YE KY+   S + +     L   K++Q ++    
Sbjct: 177 DMTVGILKGEALPVVEI-IPKKGVYDYECKYTKGMSEYRILKDEKLS--KKLQEISLKIS 233

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           + +  +  +R DF       K+F+LE+N  PGMT +S+ P  A   G  F++L+
Sbjct: 234 KFLSLKDFARIDFRVTK-EGKIFFLEVNTIPGMTELSLLPMAAKEKGMDFKKLI 286


>gi|291616274|ref|YP_003519016.1| DdlB [Pantoea ananatis LMG 20103]
 gi|291151304|gb|ADD75888.1| DdlB [Pantoea ananatis LMG 20103]
          Length = 305

 Score =  181 bits (459), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 114/305 (37%), Positives = 168/305 (55%), Gaps = 17/305 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG S+ER+VSL SG A  + L +AG     ID      L L     +  F  LHG
Sbjct: 4   VAVLMGGTSAERDVSLMSGGAVLAGLREAGIDAQGIDTRDVSVLELTAQGFEKVFIALHG 63

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +QA+LE L++PYT SG++ASA++MDK+R+K +    G+P    + + R  M S
Sbjct: 64  RGGEDGTLQAVLEFLQLPYTGSGVMASAVTMDKLRTKLLWQGRGLPAGKFVWITREQMQS 123

Query: 121 ------QHLISP---PYVIKPLKGGSSLGIIVIKK--DQSIPLDLLQSSSWNHGDQLLIE 169
                 +  IS    P  +KP   GSS+GI  + +  D S  L+     ++ H D +L+E
Sbjct: 124 GLDAATEAAISALGLPLFVKPSSEGSSVGISRVNQLSDLSAALE----EAFRHDDNVLVE 179

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
            ++ G E T G++GD  L   +I    S+FY YE KY S ++ +  PA +  +   E+Q+
Sbjct: 180 AFLSGEEYTVGILGDQILPAIKIKTA-SEFYDYEAKYISDDTQYFCPAGLSAEREAELQQ 238

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           L + A +A+GC G  R D + D        LE N  PGMT  S+ P  A  AG +F +L+
Sbjct: 239 LVWSAWRALGCSGWGRVDVMTDDQGHFQL-LEANTSPGMTSHSLVPMAAKQAGLTFSQLV 297

Query: 290 LWMVE 294
           + ++E
Sbjct: 298 VRILE 302


>gi|270263961|ref|ZP_06192229.1| D-alanine--D-alanine ligase [Serratia odorifera 4Rx13]
 gi|270042154|gb|EFA15250.1| D-alanine--D-alanine ligase [Serratia odorifera 4Rx13]
          Length = 306

 Score =  181 bits (459), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 112/304 (36%), Positives = 169/304 (55%), Gaps = 15/304 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-DRSVGLVLAHLKPDLAFNVLH 59
           +AVL+GG S+EREVSL SG A  + L +AG     ID+ D  V  +  H    + F  LH
Sbjct: 5   VAVLLGGTSAEREVSLQSGAAVLAGLREAGIDAHGIDIRDFPVTQLKEHGFTKV-FIALH 63

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT-- 117
           G  GEDG +Q +LE LE+PYT SG++ASAL+MDK R+K V  S G+PV P + +NR    
Sbjct: 64  GRGGEDGTLQGMLEFLELPYTGSGVMASALTMDKWRTKMVWQSMGLPVAPYVALNRLQYA 123

Query: 118 -MDSQHLISP------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
             + Q LI+       P ++KP + GSS+G+  + +  ++   L     + H D +L+E+
Sbjct: 124 GAEKQSLIARVEALGLPLIVKPSREGSSVGMSKVTERDALEAAL--EEGFRHDDDVLVEK 181

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
           ++ G E T  ++GD  L    I  P   FY Y+ KY S ++ +  P+ +  +   E+  L
Sbjct: 182 WLSGPEYTVAMLGDQVLPSIRIQ-PAGVFYDYQAKYISDDTQYFCPSGLGAEQEAEMAAL 240

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A  A++ + C G  R D + D      + LE+N  PGMT  S+ P  A  +G SF +L+ 
Sbjct: 241 ALRAYRGLDCSGWGRVDVMQDS-DGSFYLLEVNTSPGMTSHSLVPMAARQSGLSFSQLVA 299

Query: 291 WMVE 294
            ++E
Sbjct: 300 RILE 303


>gi|124265657|ref|YP_001019661.1| D-alanine--D-alanine ligase [Methylibium petroleiphilum PM1]
 gi|190359164|sp|A2SCY7|DDL_METPP RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|124258432|gb|ABM93426.1| D-alanine--D-alanine ligase [Methylibium petroleiphilum PM1]
          Length = 319

 Score =  181 bits (459), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 113/313 (36%), Positives = 168/313 (53%), Gaps = 25/313 (7%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG S+ER++SL SG     AL+DAG      D      + L        F  LHG
Sbjct: 13  VAVLMGGTSAERDISLMSGGGVLKALQDAGVDAHAFDPKDHELVELRRQGFQRCFIALHG 72

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG VQ  LELL IPYT SG++ASA++MDK+ +K+V  + G+P    +   R   D 
Sbjct: 73  RHGEDGTVQGALELLRIPYTGSGVMASAIAMDKIMTKRVWLAEGLPTPRYV---RLAPDE 129

Query: 121 QHL---------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS---SWNHGDQLLI 168
           Q           +  P ++KP + GSS+G+  +     +    +Q +   S  H   +L 
Sbjct: 130 QTPERVRGVPDDLGLPLIVKPPREGSSIGVTKV-----LGYSQMQDAVALSARHDPDVLC 184

Query: 169 EQYVDGIELTCGVMGDAS----LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           E+++DG E+TC V+G+ +    L V  I VP    Y Y+ KY +    ++ P+ +P D  
Sbjct: 185 EEFIDGAEVTCPVLGEGANARALPVIRI-VPPEAGYDYQNKYFTDEVKYLCPSGLPADEE 243

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
            E+QR+   A++A+GCRG  R+D +     RK F LE+N  PGMT  S+ P  A  AG  
Sbjct: 244 AEIQRIVLAAYRALGCRGWGRADLMIRASDRKPFLLEMNTSPGMTGHSLVPMSAKAAGLG 303

Query: 285 FRELLLWMVEDAS 297
           + +L L +++ A+
Sbjct: 304 YEQLCLHILQGAA 316


>gi|161612474|ref|YP_001586439.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Paratyphi B str. SPB7]
 gi|161361838|gb|ABX65606.1| hypothetical protein SPAB_00164 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 306

 Score =  181 bits (459), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 111/303 (36%), Positives = 168/303 (55%), Gaps = 13/303 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+ER+VSL+SG A  + L + G     +D        L  +    AF  LHG
Sbjct: 5   IAVLLGGTSAERDVSLNSGAAVLAGLREGGINAHPVDPQEVDVAQLKAMGFQKAFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR----- 115
             GEDG +Q +LELL +PYT SG++ASALSMDK+RSK +    G+PV P + + R     
Sbjct: 65  RGGEDGTLQGMLELLGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124

Query: 116 -FTMDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
             + + +  IS    P ++KP + GSS+G+  + ++ ++   L  S ++ H D++LIE++
Sbjct: 125 GLSEEQKARISALGLPLIVKPSREGSSVGMTKVVEENALQGAL--SLAFQHDDEILIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L    I  P   FY YE KY S  + +  PA +       +Q L 
Sbjct: 183 LCGPEFTVAIVGEEILPSIRIQ-PAGTFYDYEAKYLSDETQYFCPAGLEASQEAALQSLV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A +A+GC G  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 242 LQAWKALGCTGWGRIDVMLDS-DGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300

Query: 292 MVE 294
           ++E
Sbjct: 301 ILE 303


>gi|153875644|ref|ZP_02003354.1| D-alanine--D-alanine ligase [Beggiatoa sp. PS]
 gi|152067892|gb|EDN66646.1| D-alanine--D-alanine ligase [Beggiatoa sp. PS]
          Length = 290

 Score =  181 bits (459), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 113/296 (38%), Positives = 167/296 (56%), Gaps = 10/296 (3%)

Query: 5   MGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGE 64
           MGG S+EREVSL SG+A  +AL         ID   ++   L     D AF  LHG  GE
Sbjct: 1   MGGHSAEREVSLKSGQAILAALLRQSVDAVGIDTAHNLVTQLTENSFDRAFIALHGRGGE 60

Query: 65  DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI 124
           DG +Q +LEL+ IPYT SG+LA AL+MDK R+KQ+    G+P   S+LV   + D   +I
Sbjct: 61  DGTIQGLLELMGIPYTGSGVLACALAMDKYRTKQLWQGIGLPTPASVLVQTDS-DFNSII 119

Query: 125 SP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
                P ++KP   GSS+GI  +K    +    ++++S  H D ++ E Y+ G E T  +
Sbjct: 120 EKLGLPLMVKPSLEGSSVGITKVKNVDELA-SAVETASQFHCD-IIAEHYISGTEYTAAI 177

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241
           + D +L +  +  P+ +FY +  KY+   ++++ P  +P    +E+Q +A  A  ++G +
Sbjct: 178 LHDTALPLIRLETPR-EFYDFTAKYNDNQTSYICPCGLPEKQERELQEMAMQAFLSLGAK 236

Query: 242 GISRSDFLFDPLSRKVFWL-EINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           G  R DFL D  S+   WL EIN+ PGMT  S+ P  A  AG SF EL+L ++  A
Sbjct: 237 GWGRVDFLCDETSKP--WLIEINIIPGMTDHSLVPMAAKQAGISFDELVLRILSQA 290


>gi|269959078|ref|YP_003328867.1| D-alanine--D-alanine ligase [Anaplasma centrale str. Israel]
 gi|269848909|gb|ACZ49553.1| D-alanine--D-alanine ligase [Anaplasma centrale str. Israel]
          Length = 336

 Score =  181 bits (458), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 108/300 (36%), Positives = 168/300 (56%), Gaps = 5/300 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S EREVSL+ GK  A AL   G + + +D++R     L  + PDL +N LHG
Sbjct: 15  IAVLCGGSSPEREVSLAGGKRIADALGRLGHRAAVVDLNRESAHQLLAMAPDLVYNALHG 74

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-SILVNRFTMD 119
             GEDG    +L++L + YTHS + AS++ MDK+ +K V+ S G+     S+L     + 
Sbjct: 75  GQGEDGCASGLLDILGLAYTHSRVAASSVGMDKVLTKHVLKSLGIDFPEFSVLTKEEVLS 134

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
           ++ ++  P+VIKP+ GGS++G+  I   +S  LDL   +    G ++L+E+Y+ G E+  
Sbjct: 135 AKEVMPYPFVIKPICGGSTIGVHAIFS-RSEYLDLSVHADALEG-RMLVEEYIPGQEVHT 192

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
            V    ++   E  + +   Y Y+ KY      HV PA +  D+Y      A   +Q +G
Sbjct: 193 AVFLGRAIGTMEF-LFEGRVYGYDAKYVEGLCRHVFPANLSDDVYSLTMEWAVKLYQCLG 251

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPE-MAAYAGYSFRELLLWMVEDASC 298
           CR +SR DF +D  ++ +  LEIN  PGMT  S  PE +    G  F +++ ++V+DA C
Sbjct: 252 CRTVSRVDFRYDKANKALKLLEINTHPGMTACSALPEILWLRCGLDFDQVVDFIVKDALC 311


>gi|313200244|ref|YP_004038902.1| d-alanine/d-alanine ligase [Methylovorus sp. MP688]
 gi|312439560|gb|ADQ83666.1| D-alanine/D-alanine ligase [Methylovorus sp. MP688]
          Length = 320

 Score =  181 bits (458), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 120/298 (40%), Positives = 166/298 (55%), Gaps = 12/298 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-VDRSVGLVLAHLKPDLAFNVLH 59
           +AVLMGG S EREVSL SG A  +AL   G + +  D  +R +  +LA    D  F  LH
Sbjct: 26  VAVLMGGRSGEREVSLKSGGAVLAALLRQGVEAAAFDPAERDLHELLAF---DRVFISLH 82

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---F 116
           G FGEDG VQ  LEL+ IPYT SG+LAS++ MDK R+K +  S G+      L++    F
Sbjct: 83  GRFGEDGTVQGALELMGIPYTGSGVLASSVGMDKWRTKLLWRSAGIATPDFELLDASSDF 142

Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
               Q L  P +V KP   GSS+GI  +K  QS  L      +      ++ E++V G E
Sbjct: 143 AAVEQRLGLPMFV-KPANEGSSIGISKVK--QSGALKAAYELAAKSDPLVIAERFVGGGE 199

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
            T G++GD +L +  I VP ++FY +E KY   ++ ++ P  +P +    ++  A  A +
Sbjct: 200 YTVGILGDEALPIIRI-VPANEFYDFEAKYLRDDTQYLCPCGLPAEQEARIRAEALQAFR 258

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           AIG RG  R DFL D   R  F LE+N  PGMT  S+ P  A   G SF EL++ ++E
Sbjct: 259 AIGGRGWGRVDFLMDEAGRHYF-LEVNTSPGMTDHSLVPMAAKANGISFDELVIRILE 315


>gi|238021217|ref|ZP_04601643.1| hypothetical protein GCWU000324_01115 [Kingella oralis ATCC 51147]
 gi|237868197|gb|EEP69203.1| hypothetical protein GCWU000324_01115 [Kingella oralis ATCC 51147]
          Length = 309

 Score =  181 bits (458), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 119/304 (39%), Positives = 169/304 (55%), Gaps = 15/304 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD---LAFNV 57
           +AVLMGG SSERE+SL+SGKA  +AL+  G      D   +    LA LK      AFN+
Sbjct: 10  IAVLMGGFSSEREISLASGKAILAALQSKGIDAHPFDPAETN---LAELKTQGFQAAFNI 66

Query: 58  LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---- 113
           LHG +GEDG VQ  LE L IPYT  G+LASAL MDK R K +  + G+P+ P+  V    
Sbjct: 67  LHGTYGEDGTVQGALEALGIPYTGCGVLASALGMDKYRCKLIWQALGLPI-PAFAVLHDD 125

Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
           + FT   Q L   P  IKP   GSS+G+  + +   +     Q    N   ++L EQ++ 
Sbjct: 126 SDFTAVEQQL-GLPLFIKPAAEGSSVGVHKVCQAGELAQIYRQLRRENLHGEILAEQFMS 184

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           G E TCGV+   +L    I +P++DFY +E KY   ++ ++ P+ +  +  + +Q LA  
Sbjct: 185 GGEYTCGVLNQQALPSIRI-IPQNDFYDWEAKYQRNDTVYLCPSDLSAEDEQLMQSLARQ 243

Query: 234 AHQAIGCRGI-SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           A  AIG      R DFL D  + K++ LE+N  PGMT  S+ P+ A   G  F +L + +
Sbjct: 244 AFAAIGGGNTCGRVDFLKDA-AGKIYILEVNTLPGMTGHSLIPKAAQQKGIGFADLCVAI 302

Query: 293 VEDA 296
           ++ A
Sbjct: 303 LQTA 306


>gi|254303966|ref|ZP_04971324.1| D-alanine--D-alanine ligase [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
 gi|148324158|gb|EDK89408.1| D-alanine--D-alanine ligase [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
          Length = 287

 Score =  181 bits (458), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 109/300 (36%), Positives = 167/300 (55%), Gaps = 25/300 (8%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL-VLAHLKPDLAFNVLH 59
           +AV MGG SSE+E+SL SG A   +L+  G+    + +D    +        DLA+ VLH
Sbjct: 3   IAVFMGGTSSEKEISLKSGAAVLESLKKQGYDTYGVILDEKNQVSAFVDNDYDLAYLVLH 62

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL----VNR 115
           G  GE+G +QA+L++L   YT SG+LASA++MDK ++KQ+  S G+    S      + R
Sbjct: 63  GGNGENGKIQAVLDILGKKYTGSGVLASAITMDKNKTKQIAQSVGIKTPKSYRTVEEIER 122

Query: 116 FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175
           F          P +IKP+  GSS G+ +    +     + + +      + +IE Y+ G 
Sbjct: 123 F----------PVIIKPVDEGSSKGLFLCNNKEEAQEAVKKLA------KPIIEDYIVGE 166

Query: 176 ELTCGVMGDASLDVTEIAVPKSD-FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
           ELT GV+   +L V +I +P++D  Y Y+ KY+   S H  PAKI    YKE  ++A   
Sbjct: 167 ELTVGVLNGEALGVLKI-IPQADVLYDYDSKYAKGGSIHEFPAKIENKSYKEAMKIAEKI 225

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           H   G +GISRSDF+      ++++LE+N  PGMT  S+ P++A   GY+F +++   VE
Sbjct: 226 HSEFGMKGISRSDFILS--EGELYFLEVNSSPGMTKTSLIPDLATLKGYTFDDVVRITVE 283


>gi|315633819|ref|ZP_07889108.1| D-alanine-D-alanine ligase B [Aggregatibacter segnis ATCC 33393]
 gi|315477069|gb|EFU67812.1| D-alanine-D-alanine ligase B [Aggregatibacter segnis ATCC 33393]
          Length = 313

 Score =  180 bits (457), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 111/300 (37%), Positives = 168/300 (56%), Gaps = 10/300 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SG A  +AL   G+    ID        L     D  FN+LHG
Sbjct: 14  IAVLLGGTSAEREVSLNSGTAVLNALRKQGYDAHPIDPKEFPVATLKEQGFDRVFNILHG 73

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFT 117
             GEDG +Q +LE + IPYT  G++ SAL+MDKMR+K +  + G+PV    +V   NR  
Sbjct: 74  RGGEDGTMQGLLEQIGIPYTGCGVMTSALTMDKMRTKMLWKAFGLPVAEMEIVTVENRAN 133

Query: 118 MDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
           ++ + ++     P ++KP   GSS+G+  +K      L+     +      +LIE+++ G
Sbjct: 134 LNPESVVKKLGLPLMVKPSLEGSSVGLTKVKAIAE--LESAVDFALKFDRTVLIEEWLAG 191

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
            E T  V+ +  L   +I VP+ +FY Y+ KY S N+ +  PA +     +E++ L   A
Sbjct: 192 DEFTVPVLDNEVLPSIKI-VPEGEFYDYDAKYISDNTQYFCPAGLSDKREQELRHLVKQA 250

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           +  +GCRG SR D + D        +E+N  PGMT  S+FP+ AA  GYSF +L+  ++E
Sbjct: 251 YDVVGCRGWSRIDVIADA-EGNFRLVEVNTNPGMTSHSLFPKSAATVGYSFEQLVERILE 309


>gi|317046899|ref|YP_004114547.1| D-alanine/D-alanine ligase [Pantoea sp. At-9b]
 gi|316948516|gb|ADU67991.1| D-alanine/D-alanine ligase [Pantoea sp. At-9b]
          Length = 306

 Score =  180 bits (457), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 112/303 (36%), Positives = 166/303 (54%), Gaps = 13/303 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+ER+VSL SG A  + L + G     +D      L L     D AF  LHG
Sbjct: 5   VAVLLGGTSAERDVSLMSGNAVLAGLREMGIDAHPVDTRDVSVLNLKQQGFDKAFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117
             GEDG +QA+LE  +IPYT SG++ASA++MDK+RSK +    G+P    + + R     
Sbjct: 65  RGGEDGTLQAVLEFQQIPYTGSGVMASAITMDKLRSKLLWQGRGLPAGKFVWLTRQQQEN 124

Query: 118 -MDSQHL-----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
            +D+Q L     +  P  +KP   GSS+GI  +    ++P  L  + ++ H D +L+E +
Sbjct: 125 GLDAQTLAEIDALGLPVFVKPSCEGSSVGISRVNTRDALPAAL--AEAFRHDDDVLVEAF 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T G++GD  L   +I    S+FY YE KY S ++ +  P+ +  +   E+Q L 
Sbjct: 183 LSGAEYTVGILGDQILPSIKIQ-SASEFYDYEAKYISDDTQYFCPSGLSAEREAELQALV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A +A+GC G  R D + D        LE+N  PGMT  S+ P  A  AG SF +L+  
Sbjct: 242 LAAWRALGCSGWGRVDVMVDG-EDNFQLLEVNTSPGMTSHSLVPMAAKQAGLSFPQLVAR 300

Query: 292 MVE 294
           ++E
Sbjct: 301 ILE 303


>gi|168234894|ref|ZP_02659952.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|194734683|ref|YP_002113148.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|194710185|gb|ACF89406.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197291932|gb|EDY31282.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|322615951|gb|EFY12868.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315996572]
 gi|322620735|gb|EFY17595.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-1]
 gi|322623913|gb|EFY20750.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-3]
 gi|322627361|gb|EFY24152.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-4]
 gi|322630668|gb|EFY27432.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-1]
 gi|322638112|gb|EFY34813.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-2]
 gi|322640598|gb|EFY37249.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 531954]
 gi|322647739|gb|EFY44224.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Montevideo str. NC_MB110209-0054]
 gi|322648088|gb|EFY44555.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Montevideo str. OH_2009072675]
 gi|322656880|gb|EFY53166.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Montevideo str. CASC_09SCPH15965]
 gi|322657410|gb|EFY53682.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 19N]
 gi|322663729|gb|EFY59929.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 81038-01]
 gi|322666562|gb|EFY62740.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MD_MDA09249507]
 gi|322672279|gb|EFY68391.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 414877]
 gi|322676409|gb|EFY72480.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 366867]
 gi|322679498|gb|EFY75543.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 413180]
 gi|322686173|gb|EFY82157.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 446600]
 gi|323195017|gb|EFZ80203.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609458-1]
 gi|323200074|gb|EFZ85161.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556150-1]
 gi|323201105|gb|EFZ86174.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609460]
 gi|323209502|gb|EFZ94435.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 507440-20]
 gi|323212246|gb|EFZ97070.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556152]
 gi|323216551|gb|EGA01277.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB101509-0077]
 gi|323219900|gb|EGA04378.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB102109-0047]
 gi|323225820|gb|EGA10040.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB110209-0055]
 gi|323228638|gb|EGA12767.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB111609-0052]
 gi|323236748|gb|EGA20824.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009083312]
 gi|323239751|gb|EGA23798.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009085258]
 gi|323242201|gb|EGA26230.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315731156]
 gi|323249375|gb|EGA33291.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2009159199]
 gi|323252292|gb|EGA36143.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008282]
 gi|323256618|gb|EGA40348.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008283]
 gi|323262987|gb|EGA46537.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008284]
 gi|323265472|gb|EGA48968.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008285]
 gi|323271740|gb|EGA55158.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008287]
          Length = 306

 Score =  180 bits (457), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 111/303 (36%), Positives = 168/303 (55%), Gaps = 13/303 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+ER+VSL+SG A  + L + G     +D        L  +    AF  LHG
Sbjct: 5   IAVLLGGTSAERDVSLNSGAAVLAGLREGGIDAHPVDPQEVDVAQLKAMGFQKAFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR----- 115
             GEDG +Q +LELL +PYT SG++ASALSMDK+RSK +    G+PV P + + R     
Sbjct: 65  RGGEDGTLQGMLELLGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124

Query: 116 -FTMDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
             + + +  IS    P ++KP + GSS+G+  + ++ ++   L  S ++ H D++LIE++
Sbjct: 125 GLSEEQKARISALGLPLIVKPSREGSSVGMTKVVEENALQGAL--SLAFQHDDEILIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L    I  P   FY YE KY S  + +  PA +       +Q L 
Sbjct: 183 LCGPEFTVAIVGEEILPSIRIQ-PAGTFYDYEAKYLSDETQYFCPAGLEASQEAALQSLV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A +A+GC G  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 242 LQAWKALGCTGWGRIDVMLDS-DGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300

Query: 292 MVE 294
           ++E
Sbjct: 301 ILE 303


>gi|253997366|ref|YP_003049430.1| D-alanine--D-alanine ligase [Methylotenera mobilis JLW8]
 gi|253984045|gb|ACT48903.1| D-alanine/D-alanine ligase [Methylotenera mobilis JLW8]
          Length = 301

 Score =  180 bits (457), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 123/297 (41%), Positives = 165/297 (55%), Gaps = 18/297 (6%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP-DLAFNVLH 59
           +AVL+GG S EREVSL SG A  +AL+  G      D        L  L+  D A   LH
Sbjct: 7   VAVLLGGKSGEREVSLKSGTAVLAALQRQGVDAHAFD---PATRPLHDLESFDTAMISLH 63

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---F 116
           G FGEDG +Q  LELL IPYT SG++ASA+ MDK R+K + S+ GV      LV+    F
Sbjct: 64  GRFGEDGAMQGALELLGIPYTGSGVMASAIGMDKWRTKMMWSAAGVSTPAFELVSADSDF 123

Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI--PLDLLQSSSWNHGDQLLI-EQYVD 173
               Q L  P +V KP   GSS+GI  +K+   +    +L   S     D L+I EQ+V 
Sbjct: 124 EAIEQRLGLPLFV-KPANEGSSIGISKVKQTGGLKAAYELAAKS-----DPLVIAEQFVG 177

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           G E T G++GD +L +  I VPK++FY +E KY   ++ +  P  +  +   ++Q+ A L
Sbjct: 178 GGEYTVGILGDQALPIVRI-VPKNEFYDFEAKYLRDDTEYRCPCGLSAEKEAQIQQEALL 236

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A   IGC+G  R DFL D   +  F LE+N  PGMT  S+ P  A  AG SF EL++
Sbjct: 237 AFNTIGCQGWGRVDFLMDEAGKHYF-LEVNTSPGMTDHSLVPMAAKAAGISFDELVV 292


>gi|253998175|ref|YP_003050238.1| D-alanine--D-alanine ligase [Methylovorus sp. SIP3-4]
 gi|253984854|gb|ACT49711.1| D-alanine/D-alanine ligase [Methylovorus sp. SIP3-4]
          Length = 320

 Score =  180 bits (457), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 120/298 (40%), Positives = 166/298 (55%), Gaps = 12/298 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-VDRSVGLVLAHLKPDLAFNVLH 59
           +AVLMGG S EREVSL SG A  +AL   G + +  D  +R +  +LA    D  F  LH
Sbjct: 26  VAVLMGGRSGEREVSLKSGGAVLAALLRQGVQAAAFDPAERDLHELLAF---DRVFISLH 82

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---F 116
           G FGEDG VQ  LEL+ IPYT SG+LAS++ MDK R+K +  S G+      L++    F
Sbjct: 83  GRFGEDGTVQGALELMGIPYTGSGVLASSVGMDKWRTKLLWRSAGIATPDFELLDASSDF 142

Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
               Q L  P +V KP   GSS+GI  +K  QS  L      +      ++ E++V G E
Sbjct: 143 AAVEQRLGLPMFV-KPANEGSSIGISKVK--QSGALKAAYELAAKSDPLVIAERFVGGGE 199

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
            T G++GD +L +  I VP ++FY +E KY   ++ ++ P  +P +    ++  A  A +
Sbjct: 200 YTVGILGDEALPIIRI-VPANEFYDFEAKYLRDDTQYLCPCGLPAEQEARIRAEALQAFR 258

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           AIG RG  R DFL D   R  F LE+N  PGMT  S+ P  A   G SF EL++ ++E
Sbjct: 259 AIGGRGWGRVDFLMDESGRHYF-LEVNTSPGMTDHSLVPMAAKANGISFDELVIRILE 315


>gi|325266251|ref|ZP_08132930.1| D-alanine-D-alanine ligase B [Kingella denitrificans ATCC 33394]
 gi|324982213|gb|EGC17846.1| D-alanine-D-alanine ligase B [Kingella denitrificans ATCC 33394]
          Length = 308

 Score =  180 bits (456), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 121/307 (39%), Positives = 170/307 (55%), Gaps = 13/307 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP---DLAFNV 57
           +AVLMGG SSERE+SL SGKA   AL+  G      D      + L+ LK    D+AFN+
Sbjct: 7   VAVLMGGFSSEREISLISGKAILEALQSRGVDAHAFD---PAEMELSELKTQNFDMAFNI 63

Query: 58  LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--- 114
           LHG +GEDG VQ  LE L IPYT  G+LASAL MDK R K + S+ G+PV P  +++   
Sbjct: 64  LHGTYGEDGTVQGALEALGIPYTGCGVLASALGMDKYRCKLIWSALGLPVPPFEVLHDDS 123

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
            F    Q L   P  IKP   GSS+G++ IK+   +     Q         +L EQ++ G
Sbjct: 124 DFAAVEQKL-GLPLFIKPAAEGSSVGVVKIKQAGELAQQYAQLRDMGLHGVILAEQFMSG 182

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
            E TCGV    +L    I +P+++FY YE KY   ++ ++ P+ +  +  + +Q LA  A
Sbjct: 183 GEYTCGVFNGKALPSIHI-IPQTEFYDYEAKYLRDDTVYLCPSDLSGEDERTMQHLAQEA 241

Query: 235 HQAI-GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
             AI G   + R DFL D  +  ++ LE N  PGMT  S+ P+ A   G SF +L + ++
Sbjct: 242 FAAIGGGNTLGRIDFLKDS-AGCLYILEANTLPGMTSHSLIPKSALQIGISFADLCIAVL 300

Query: 294 EDASCLR 300
           ++A   R
Sbjct: 301 QNAQDER 307


>gi|269127661|ref|YP_003301031.1| D-alanine/D-alanine ligase [Thermomonospora curvata DSM 43183]
 gi|268312619|gb|ACY98993.1| D-alanine/D-alanine ligase [Thermomonospora curvata DSM 43183]
          Length = 336

 Score =  180 bits (456), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 114/328 (34%), Positives = 165/328 (50%), Gaps = 37/328 (11%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID----------VDRSVGLVLAHLK 50
           +AVL GG SSEREVS++S     +AL D G  V  ID          V+  V   +A+  
Sbjct: 3   IAVLFGGASSEREVSIASAAQVFTALRDRGHDVIAIDTAKGKLSPQEVEAFVSATVAYDP 62

Query: 51  P------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           P                        D+ F  LHG  GEDG +QA+L+   IPYT SG+L 
Sbjct: 63  PGVDDIPASEVTARLTAEDSELRGVDVVFLALHGGSGEDGTLQALLKAAGIPYTGSGVLG 122

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           SA++MDK  SK++    GVP    I+      +    I  P ++KP   GS++G+ V+K 
Sbjct: 123 SAVAMDKDMSKRLFRQAGVPTPDWIMAPATAAEVAERIGFPAIVKPNSQGSTIGLTVVKA 182

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
            + +   +  +++W+H  +++IE++V G EL  GV+   +L V EI     + + Y+ KY
Sbjct: 183 PEQLEEAIATAAAWDH--EVMIERFVPGRELVVGVLDGRALAVGEIVPQLGEIFDYQSKY 240

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
               +    PA +P +   EVQRLA  AH+A+     SR DF  D   R ++ LE N  P
Sbjct: 241 QVGGAVETFPADLPAETAAEVQRLAVAAHRALKLGSYSRIDFRLDAQGR-LWCLEANTLP 299

Query: 267 GMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           GMT  S+ P+ AA  G  F EL   + E
Sbjct: 300 GMTATSLMPQSAAAVGIGFAELCERLCE 327


>gi|183599899|ref|ZP_02961392.1| hypothetical protein PROSTU_03420 [Providencia stuartii ATCC 25827]
 gi|188022174|gb|EDU60214.1| hypothetical protein PROSTU_03420 [Providencia stuartii ATCC 25827]
          Length = 306

 Score =  180 bits (456), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 114/308 (37%), Positives = 169/308 (54%), Gaps = 17/308 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL SG A  + L  AG     ID      + L     D  F  LHG
Sbjct: 5   VAVLFGGTSAEREVSLQSGNAVLAGLRQAGIDAHPIDTKDFPVVTLKDAGFDKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LE L +PYT SG++ASALSMDK+R+KQ+    G+ V P + +++F   S
Sbjct: 65  RGGEDGTIQGMLEFLGLPYTGSGVMASALSMDKLRTKQLWEGAGLAVSPYVSLSKFEFSS 124

Query: 121 ------QHLISP---PYVIKPLKGGSSLGIIVIKK--DQSIPLDLLQSSSWNHGDQLLIE 169
                 + L++    P ++KP   GSS+G+  +    D S  L L    ++   + +LIE
Sbjct: 125 LKTEKIEELVAYLGLPLIVKPSLEGSSVGMSKVDNLGDLSAALAL----AFRFDETVLIE 180

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           +++ G E T  V+G+ +L    I  P   FY YE KY S  + +  P+ +      ++ +
Sbjct: 181 KWLSGPEYTVAVLGEQTLPSIRIQ-PPGVFYDYEAKYLSDETQYFCPSGLDAGSEAQLSQ 239

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           LA  A+QA+GCRG  R D + D    + + LE+N  PGMT  S+ P  A  AG  F +L+
Sbjct: 240 LAMRAYQAVGCRGWGRVDVMQDS-DGQFYLLEVNTSPGMTSHSLVPMAARQAGMDFSQLV 298

Query: 290 LWMVEDAS 297
           + ++E A+
Sbjct: 299 VRILELAN 306


>gi|255320029|ref|ZP_05361225.1| D-alanine--D-alanine ligase B [Acinetobacter radioresistens SK82]
 gi|255302897|gb|EET82118.1| D-alanine--D-alanine ligase B [Acinetobacter radioresistens SK82]
          Length = 311

 Score =  180 bits (456), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 110/300 (36%), Positives = 172/300 (57%), Gaps = 14/300 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-VDRSVGLVLAHLKPDLAFNVLH 59
           +AVL+GG S+EREVSL SG+A   AL  +G +    D  +R V  ++ +   D AF VLH
Sbjct: 10  VAVLLGGKSAEREVSLDSGRAVLEALIRSGVEAEAFDPQERCVTELVNY---DRAFIVLH 66

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G  GEDG +Q +LE L IPYT +G+  SA+ MDK+++KQV     +P  P  +V++   D
Sbjct: 67  GRGGEDGQIQGVLEWLNIPYTGTGVQGSAIGMDKIKTKQVWQGSELPTAPHRIVSK-DAD 125

Query: 120 SQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
           +  +I+    P++IKP+  GSS+G+  ++K +     L +++   H   ++ E++++G E
Sbjct: 126 ADEVIASLGLPFIIKPVHEGSSIGMSKVEKPEDFAEALAKATE--HDAVVMAEKWINGRE 183

Query: 177 LTCGVMGDASLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
            T  ++   +L V  +  PK   FY YE KY+  +  + +P  +     K +Q LA  A 
Sbjct: 184 FTIVLLNGQALPVIRLEPPKDVAFYDYEAKYNRNDVQYGIPCGLSEAEEKTLQELALRAF 243

Query: 236 QAIGCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           QA+GC+G  R D + D      FW LE+N  PGMT  S+ P+ A   GY F +L + ++E
Sbjct: 244 QAVGCKGWGRIDAMQDEQGN--FWLLEVNTVPGMTSHSLVPKAAKAVGYDFDQLCVTILE 301


>gi|330957968|gb|EGH58228.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. maculicola
           str. ES4326]
          Length = 319

 Score =  180 bits (456), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 118/303 (38%), Positives = 174/303 (57%), Gaps = 8/303 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL+SG+A   AL DAG     IDV       L   K D AF VLHG
Sbjct: 21  VAVLFGGKSAEREVSLNSGQAVLKALVDAGVDAFGIDVGGDFLQRLVSEKIDRAFIVLHG 80

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV-CPSILVNRF-TM 118
             GEDG +Q +LE LEIPYT SG+LASAL+MDK+R+KQV  S G+P    ++L N    +
Sbjct: 81  RGGEDGTMQGLLECLEIPYTGSGVLASALAMDKLRTKQVWQSLGLPTPLHAVLENESDCI 140

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   +  P ++KP   GSS+G+  +     +      +S+++   Q+L+EQ++ G E T
Sbjct: 141 CAATELGFPLIVKPAHEGSSIGMAKVNSVDELIAAWKTASTYD--SQVLVEQWIQGPEFT 198

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +    L    +  P S FY Y+ KY + ++ + +P  +     +E+++LA  A  AI
Sbjct: 199 VASLRGQVLPPIGLGTPHS-FYDYDAKYLASDTQYRIPCGLGDAQEQELKQLAARACDAI 257

Query: 239 GCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           G  G +R+D + D   +  FW LE+N  PGMT  S+ P  A  AG  F++L+L ++ D+ 
Sbjct: 258 GIAGWARTDVMQDAQGK--FWLLEVNTVPGMTDHSLVPMAARAAGLDFQQLVLAILADSV 315

Query: 298 CLR 300
            +R
Sbjct: 316 PVR 318


>gi|307544554|ref|YP_003897033.1| D-alanine--D-alanine ligase [Halomonas elongata DSM 2581]
 gi|307216578|emb|CBV41848.1| D-alanine--D-alanine ligase [Halomonas elongata DSM 2581]
          Length = 305

 Score =  179 bits (455), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 118/301 (39%), Positives = 171/301 (56%), Gaps = 14/301 (4%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--LAHLKPDLAFNVLHG 60
           VL GG S+EREVSL SG+A  +AL+  G  V+ I  D + G +  L  L PD  F  LHG
Sbjct: 10  VLYGGDSAEREVSLKSGEAILAALQRGG--VAPIAFDPAEGGLAGLEALAPDRVFIALHG 67

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q  L+LL IPYT SG+LASAL MDK R+K V  + G+P    +++N  + D 
Sbjct: 68  RGGEDGTLQGALDLLGIPYTGSGVLASALGMDKQRTKLVWQALGLPTPECVMLNAES-DW 126

Query: 121 QHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
             ++     P ++KP+  GS+LGI ++  D +  L      +  +  +++ E+++ G E 
Sbjct: 127 NAVVERLGLPLIVKPVHEGSTLGITIV--DSAETLAAAYRDAARYDARVMAERFIQGEEY 184

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           T  ++GD +L    + VP S FY YE KY S  + + LP  +     K +  L   A +A
Sbjct: 185 TVSLLGDEALPAIRVEVP-SGFYDYEAKYLSDETLYHLPCGLSETDEKALAELCREAFEA 243

Query: 238 IGCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +GCRG  R D + D   R  FW LE+N  PGMT  S+ P+ AA+AG  F  L+L +++ A
Sbjct: 244 VGCRGWGRVDVMRDDQGR--FWLLEVNTVPGMTDHSLVPQAAAHAGIDFDTLVLRILDTA 301

Query: 297 S 297
            
Sbjct: 302 G 302


>gi|257462519|ref|ZP_05626931.1| D-alanine--D-alanine ligase [Fusobacterium sp. D12]
 gi|317060174|ref|ZP_07924659.1| D-alanine-D-alanine ligase [Fusobacterium sp. D12]
 gi|313685850|gb|EFS22685.1| D-alanine-D-alanine ligase [Fusobacterium sp. D12]
          Length = 288

 Score =  179 bits (455), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 103/297 (34%), Positives = 172/297 (57%), Gaps = 14/297 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-DRSVGLVLAHLKPDLAFNVLH 59
           +AV MGGISSE+E+S+ SG+A   +L+  G+    + + ++++       + DLA+  LH
Sbjct: 3   IAVFMGGISSEKEISIRSGEAILESLQRQGYDAYGVVLNEKNMISAFQEEQYDLAYLALH 62

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G  GE+G +Q++LELL   YT S + A A+SM+K+ +K++ S  G+ +  +        +
Sbjct: 63  GGAGENGEIQSVLELLGKKYTGSQVTACAISMNKLLTKKIASFEGIRMAKTY------AN 116

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
              + + P ++KP + GSS+GI V   +  +   L + S +      +IE+Y+ G ELT 
Sbjct: 117 IAEIEAYPVMVKPSEDGSSVGIHVCNTEAEVEKALQEISGY-----AMIEEYIQGEELTV 171

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
           GV+   +L V +I    ++ Y YE KY+   S H  PA+I    Y+E    A   H+A+G
Sbjct: 172 GVLHGKALGVLKIIPKAAEIYDYESKYALGGSVHEFPARIAKTAYEEAMLNAVKIHKALG 231

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            +G+SRSDF+      +V++LE+N  PGMT  S+ P++A   GY+F ++   +VE+A
Sbjct: 232 MKGVSRSDFILK--DDQVYFLEVNACPGMTKTSLIPDLATLQGYTFDDITRMLVEEA 286


>gi|158521437|ref|YP_001529307.1| D-alanine--D-alanine ligase [Desulfococcus oleovorans Hxd3]
 gi|158510263|gb|ABW67230.1| D-alanine--D-alanine ligase [Desulfococcus oleovorans Hxd3]
          Length = 313

 Score =  179 bits (455), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 119/309 (38%), Positives = 174/309 (56%), Gaps = 24/309 (7%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKV----SQIDVDRSVGLVLAHLKPDLAFN 56
           +A++ GG+SSER+VSL+ GK   +AL+ A ++V    S+ D+ R   LV      D AF 
Sbjct: 6   VALICGGVSSERDVSLAGGKMIQAALDPARYRVLRYDSRTDLAR---LVQEAPGIDTAFV 62

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--N 114
            LHG  GEDG +Q +L+LL +PY  SG+L SAL+M+K+ +K+V    G+PV P  +V  N
Sbjct: 63  NLHGVHGEDGTIQGLLDLLGVPYQCSGVLGSALAMNKLAAKRVYQQAGLPVPPYRVVSEN 122

Query: 115 R-----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
           R     F       +  P V+KP  GGSS+G+ ++K  Q   L      +  HG  +L+E
Sbjct: 123 RDADGSFLDAHADALGFPLVVKPACGGSSIGMSIVK--QVSELAPAVDKALAHGPDVLLE 180

Query: 170 QYVDGIELTCGVMGD---ASLDVTEIAVPKS--DFYSYELKYSSLNSTHVLPAKIPLDIY 224
            Y+ G ELT GV+G+     L V EI +P     F+ YE KY+   ++ + PA +P D+ 
Sbjct: 181 AYIQGRELTGGVIGNDDPEPLPVVEI-IPGDGYGFFDYEAKYTPGATSEICPAPVPEDLS 239

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
             V+  A  AH A+ C+G SR+D +       +F LE N  PGM P S+ P  A  AG +
Sbjct: 240 ARVRDYACRAHSALFCKGYSRTDMIA--TDTDLFVLETNTIPGMGPTSLLPLAAKAAGMA 297

Query: 285 FRELLLWMV 293
           F +LL  ++
Sbjct: 298 FGDLLDRLI 306


>gi|323700785|ref|ZP_08112697.1| D-alanine/D-alanine ligase [Desulfovibrio sp. ND132]
 gi|323460717|gb|EGB16582.1| D-alanine/D-alanine ligase [Desulfovibrio desulfuricans ND132]
          Length = 303

 Score =  179 bits (455), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 108/295 (36%), Positives = 165/295 (55%), Gaps = 8/295 (2%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQID-VDRSVGLVLAHLKPDLAFNVLHGN 61
           ++ GG S ER+VSLS  +   SAL++ G  V+  D  D    L+      D AF  LHG 
Sbjct: 5   LIAGGWSDERDVSLSGARKIRSALDELGHDVTFFDPADDFRNLLSIAKGADFAFINLHGT 64

Query: 62  FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ 121
            GEDGL+QA+L+    PY  +G  AS L+++K  SK+V  + G+      L+        
Sbjct: 65  PGEDGLIQAVLDKAGCPYQGAGPAASYLALNKAASKEVFEANGINTPEWQLITPTQGRET 124

Query: 122 HL-ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            L +S P  +KP KGGSSLG+ ++K+ +  P  L     +      L+E ++ G+ELTCG
Sbjct: 125 PLELSLPVFVKPDKGGSSLGMSLVKRAEDFPAAL--DKVFAMCQSALVETFIPGVELTCG 182

Query: 181 VMGDASLDVTEIAVPK--SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           ++G+ +L +  I  P+  SDF+ YE KY++  +  + PA +   + + +Q    +AH A+
Sbjct: 183 ILGNEALPLIMI-TPRVGSDFFDYENKYAADGAEEICPAPVDEGLVRTIQEQMLVAHAAL 241

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           G  G SR DF+  P   + + LE+N  PGMTP S+ P  AA+ GYSF EL+  ++
Sbjct: 242 GLTGYSRGDFIATP-DGETYLLEVNTLPGMTPTSLLPRAAAHVGYSFTELIAELI 295


>gi|188590367|ref|YP_001922200.1| D-alanine--D-alanine ligase [Clostridium botulinum E3 str. Alaska
           E43]
 gi|229463742|sp|B2UY33|DDL_CLOBA RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|188500648|gb|ACD53784.1| D-alanine--D-alanine ligase [Clostridium botulinum E3 str. Alaska
           E43]
          Length = 301

 Score =  179 bits (455), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 100/299 (33%), Positives = 172/299 (57%), Gaps = 8/299 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGGISSERE+SL SGK+   ++    ++V  I +D    ++      D A   LHG
Sbjct: 3   VGVIMGGISSEREISLKSGKSIVDSINKNKYEVVSIVIDEKEDIINKVKGIDFALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---FT 117
            FGEDG VQ++L+ L IPY+  G L+S++ MDK  SK ++ +  +   P I + +     
Sbjct: 63  QFGEDGTVQSVLQTLGIPYSGCGPLSSSMCMDKDISKCILKAANIRTAPWINLRKNDAIN 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            +    +  P V+KP  GGSS+   +IK+++ I   +++   W+   +++IE+++ G E+
Sbjct: 123 YEEIEKMGYPVVVKPTHGGSSVATFIIKEEKDIKDAVIEGFKWDS--EVIIEKFIKGDEI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC V GD  L V  I  PK++F+ +  KY+   S   +  ++P  +++EV+++A   ++A
Sbjct: 181 TCPVFGDKMLPVVAIK-PKAEFFDFTAKYADGGSDEFV-TELPKKLHEEVEKMALATYKA 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           + C   SR D +     +  + LE+N  PGMTP S+ P+ AA    SF EL+  +++++
Sbjct: 239 LKCEVYSRVDMIVTE-DKVPYILEVNTLPGMTPNSLIPKSAAGVNISFPELIDMIIDES 296


>gi|77460892|ref|YP_350399.1| D-alanine--D-alanine ligase [Pseudomonas fluorescens Pf0-1]
 gi|123603343|sp|Q3K746|DDL_PSEPF RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|77384895|gb|ABA76408.1| D-alanine--D-alanine ligase B [Pseudomonas fluorescens Pf0-1]
          Length = 324

 Score =  179 bits (455), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 113/293 (38%), Positives = 167/293 (56%), Gaps = 8/293 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG+S+EREVSL SG A  +AL+ AG     IDV   +   L   K D AF +LHG
Sbjct: 20  VAVLFGGLSAEREVSLKSGNAVLTALQSAGVDAFGIDVGADILQRLLSEKIDRAFIILHG 79

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119
             GEDG +Q +LE+  IPYT SGILASAL+MDK+R+KQV  + G+P  P   V R   D 
Sbjct: 80  RGGEDGSMQGLLEVAGIPYTGSGILASALAMDKLRTKQVWHTLGIPT-PRHAVLRSEADC 138

Query: 120 --SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
             +   +  P ++KP   GSS+G+  +     + +D  +++S  +  Q+L+EQ++ G E 
Sbjct: 139 ISAATELGFPLIVKPAHEGSSIGMAKVSSASEL-IDAWKAAS-TYDSQVLVEQWIHGPEF 196

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           T   + D  L    +  P + FY Y+ KY + ++ + +P  +     KE+  L   A +A
Sbjct: 197 TIATLRDQVLPPIALGTPHT-FYDYDAKYIANDTQYRIPCGLDAAKEKELMDLTAQACEA 255

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +G  G  R+D + D    K ++LE+N  PGMT  S+ P  A  AG  F++L+L
Sbjct: 256 LGIAGWGRADVMQDA-DGKFWFLEVNTAPGMTDHSLVPMAAKAAGLDFQQLVL 307


>gi|329118777|ref|ZP_08247475.1| D-alanine-D-alanine ligase B [Neisseria bacilliformis ATCC
           BAA-1200]
 gi|327465124|gb|EGF11411.1| D-alanine-D-alanine ligase B [Neisseria bacilliformis ATCC
           BAA-1200]
          Length = 303

 Score =  179 bits (455), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 115/302 (38%), Positives = 167/302 (55%), Gaps = 14/302 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSER+VSL SG+A  +AL + G      D   +    L     D AFN+LHG
Sbjct: 7   VAVLMGGFSSERQVSLDSGRAVLAALREKGVDAHAFDPKETPLGGLKTQGFDCAFNILHG 66

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119
            FGEDG VQ  LE L I YT  G+LASA+ MDK R K +    G+PV P   V R   D 
Sbjct: 67  IFGEDGTVQGALEALGIRYTGCGVLASAVGMDKYRCKLLWKGLGLPV-PDYEVLREDSDF 125

Query: 120 --SQHLISPPYVIKPLKGGSSLGIIVIKKD---QSIPLDLLQSSSWNHGDQLLIEQYVDG 174
              +  +  P  +KP   GSS+G++ IK+    +++  +L Q     +  +++ E+++ G
Sbjct: 126 DAVERKLGLPLFVKPANEGSSVGVVKIKEKGRLKNVYRELRQ-----YKGEIIAEKFIGG 180

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
            E TC ++G  +L    I +P ++FY  E KY   ++ ++ P+ +     K+++ L   A
Sbjct: 181 GEYTCAILGGEALPSVRI-IPATEFYDQEAKYDRDDTVYLCPSDLSEADEKQMRELTVRA 239

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             AIG RG  R DFL D   R ++ LE N  PGMT  S+ P+ AA AG  F +L L +++
Sbjct: 240 FDAIGGRGWGRIDFLKDKNGR-LYLLEANTLPGMTSHSLVPKAAAQAGIGFADLCLRILQ 298

Query: 295 DA 296
            A
Sbjct: 299 TA 300


>gi|200387797|ref|ZP_03214409.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|199604895|gb|EDZ03440.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
          Length = 306

 Score =  179 bits (454), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 110/303 (36%), Positives = 167/303 (55%), Gaps = 13/303 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+ER+VSL+SG A  + L + G     +D        L  +     F  LHG
Sbjct: 5   IAVLLGGTSAERDVSLNSGAAVLAGLREGGINAHPVDPQEVDVAQLKAMGFQKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR----- 115
             GEDG +Q +LELL +PYT SG++ASALSMDK+RSK +    G+PV P + + R     
Sbjct: 65  RGGEDGTLQGMLELLGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124

Query: 116 -FTMDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
             + + +  IS    P ++KP + GSS+G+  + ++ ++   L  S ++ H D++LIE++
Sbjct: 125 GLSEEQKARISALGLPLIVKPSREGSSVGMTKVVEENALQGAL--SLAFQHDDEILIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L    I  P   FY YE KY S  + +  PA +       +Q L 
Sbjct: 183 LCGPEFTVAIVGEEILPSIRIQ-PAGTFYDYEAKYLSDETQYFCPAGLEASQEAALQSLV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A +A+GC G  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 242 LQAWKALGCTGWGRIDVMLDS-DGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300

Query: 292 MVE 294
           ++E
Sbjct: 301 ILE 303


>gi|16763520|ref|NP_459135.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|167990003|ref|ZP_02571103.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|168820876|ref|ZP_02832876.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|197264240|ref|ZP_03164314.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|22095577|sp|Q8ZRU1|DDLB_SALTY RecName: Full=D-alanine--D-alanine ligase B; AltName:
           Full=D-Ala-D-Ala ligase B; AltName: Full=D-alanylalanine
           synthetase B
 gi|16418630|gb|AAL19094.1| D-alanine-D-alanine ligase B [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|197242495|gb|EDY25115.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|205331483|gb|EDZ18247.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|205342502|gb|EDZ29266.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|261245363|emb|CBG23152.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|267991808|gb|ACY86693.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
 gi|301156758|emb|CBW16233.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|312911099|dbj|BAJ35073.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
 gi|320084373|emb|CBY94166.1| D-alanine-D-alanine ligase B, affects cell division [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           2007-60-3289-1]
 gi|321222296|gb|EFX47368.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica
           serovar Typhimurium str. TN061786]
 gi|323128450|gb|ADX15880.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 4/74]
 gi|332987083|gb|AEF06066.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Typhimurium str. UK-1]
          Length = 306

 Score =  179 bits (453), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 110/303 (36%), Positives = 167/303 (55%), Gaps = 13/303 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+ER+VSL+SG A  + L + G     +D        L  +     F  LHG
Sbjct: 5   IAVLLGGTSAERDVSLNSGAAVLAGLREGGINAHPVDPQEVDVAQLKAMGFQKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR----- 115
             GEDG +Q +LELL +PYT SG++ASALSMDK+RSK +    G+PV P + + R     
Sbjct: 65  RGGEDGTLQGMLELLGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124

Query: 116 -FTMDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
             + + +  IS    P ++KP + GSS+G+  + ++ ++   L  S ++ H D++LIE++
Sbjct: 125 GLSEEQKARISALGLPLIVKPSREGSSVGMTKVVEENALQGAL--SLAFQHDDEILIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L    I  P   FY YE KY S  + +  PA +       +Q L 
Sbjct: 183 LCGPEFTVAIVGEEILPSIRIQ-PAGTFYDYEAKYLSDETQYFCPAGLDASQEAALQSLV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A +A+GC G  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 242 LQAWKALGCTGWGRIDVMLDS-DGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300

Query: 292 MVE 294
           ++E
Sbjct: 301 ILE 303


>gi|251777600|ref|ZP_04820520.1| D-alanine--D-alanine ligase [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
 gi|243081915|gb|EES47805.1| D-alanine--D-alanine ligase [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
          Length = 301

 Score =  179 bits (453), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 101/299 (33%), Positives = 170/299 (56%), Gaps = 8/299 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGGISSERE+SL SGK+   ++    ++V  I +D    ++      D A   LHG
Sbjct: 3   VGVIMGGISSEREISLKSGKSIVDSINKNKYEVVSIVIDEKEDIINKIKGIDFALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---FT 117
            FGEDG VQ++L+ L IPY+  G L+SA+ MDK  SK ++ +  +   P I + +     
Sbjct: 63  QFGEDGTVQSVLQTLGIPYSGCGPLSSAMCMDKDISKCILKAANIRTAPWINLRKNDAIN 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            +    +  P V+KP  GGSS+   +IK+++ I   + +   W+   +++IE+++ G E+
Sbjct: 123 YEEIEKMGYPVVVKPTHGGSSVATFIIKEEKDIKDAVREGFKWDS--EVIIEKFIKGDEI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC V GD  L V  I  PK++F+ +  KY+   S   +  ++P  +++EV+ +A   ++A
Sbjct: 181 TCPVFGDKMLPVVAIK-PKAEFFDFTAKYADGGSDEFV-TELPKKLHEEVEEMALATYKA 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           + C   SR D +     +  + LE+N  PGMTP S+ P+ AA    SF EL+  +++++
Sbjct: 239 LKCEVYSRVDMIVTE-DKVPYILEVNTLPGMTPNSLIPKSAAGVNISFTELIDMIIDES 296


>gi|304437324|ref|ZP_07397283.1| UDP-N-acetylmuramate--L-alanine ligase [Selenomonas sp. oral taxon
           149 str. 67H29BP]
 gi|304369580|gb|EFM23246.1| UDP-N-acetylmuramate--L-alanine ligase [Selenomonas sp. oral taxon
           149 str. 67H29BP]
          Length = 785

 Score =  179 bits (453), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 110/299 (36%), Positives = 175/299 (58%), Gaps = 15/299 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59
           + V+MGG SSE EVS  SG A   AL   G+    ++++  +    +  L P + FN LH
Sbjct: 479 IVVVMGGPSSEAEVSRRSGAAILRALCAKGYPAVGMELNPATFAEEIQALHPAIVFNALH 538

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV--CPSILVNRFT 117
           G +GEDG++Q  L++L IPYT SG+ A+AL+MDK+ +K+V+++  +P   C S   +  T
Sbjct: 539 GKYGEDGILQGTLDMLGIPYTGSGVRAAALTMDKIMAKRVLAAEDIPTPRCMSFYASERT 598

Query: 118 MDSQHLI----SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
            D+   I    S P V+K  + GSS+G+ ++ +D+ +   L   +++++GD++LIE++++
Sbjct: 599 ADTPREIRTAFSLPLVVKAPEQGSSIGVYIVTRDEELSPAL--DAAFSYGDEVLIEEFIE 656

Query: 174 GIELTCGVMGDAS----LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           G ELT  V G  +    + V EI    S  Y Y+ KY+   STH++PA +      EV++
Sbjct: 657 GRELTVAVWGTPAAAEVMPVIEIR-SVSGRYDYDSKYTPGASTHIVPAPLSDACRSEVEQ 715

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           LA  A+ A GC G++R D L    +R  + +E+N  PGMT  S+ P+ A   G  F EL
Sbjct: 716 LARRAYAACGCSGLARVDLLLSAENRP-YVIELNAVPGMTETSLVPDAARALGIEFPEL 773


>gi|62178697|ref|YP_215114.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|62126330|gb|AAX64033.1| D-alanine-D-alanine ligase B, affects cell division [Salmonella
           enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
 gi|322713150|gb|EFZ04721.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
          Length = 306

 Score =  179 bits (453), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 110/303 (36%), Positives = 167/303 (55%), Gaps = 13/303 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+ER+VSL+SG A  + L + G     +D        L  +     F  LHG
Sbjct: 5   IAVLLGGTSAERDVSLNSGSAVLAGLREGGIDAHPVDPQEVDVAQLKAMGFQKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR----- 115
             GEDG +Q +LELL +PYT SG++ASALSMDK+RSK +    G+PV P + + R     
Sbjct: 65  RGGEDGTLQGMLELLGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124

Query: 116 -FTMDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
             + + +  IS    P ++KP + GSS+G+  + ++ ++   L  S ++ H D++LIE++
Sbjct: 125 GLSEEQKARISALGLPLIVKPSREGSSVGMTKVVEENALQGAL--SLAFQHDDEILIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L    I  P   FY YE KY S  + +  PA +       +Q L 
Sbjct: 183 LCGPEFTVAIVGEEILPSIRIQ-PAGTFYDYEAKYLSDETQYFCPAGLEASQEAALQSLV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A +A+GC G  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 242 LQAWKALGCTGWGRIDVMLDS-DGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300

Query: 292 MVE 294
           ++E
Sbjct: 301 ILE 303


>gi|16759125|ref|NP_454742.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|29140675|ref|NP_804017.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|56412402|ref|YP_149477.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|167550675|ref|ZP_02344432.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|168230409|ref|ZP_02655467.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|168243455|ref|ZP_02668387.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|168262185|ref|ZP_02684158.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|194451328|ref|YP_002044100.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|194471648|ref|ZP_03077632.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|197361338|ref|YP_002140973.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|213052846|ref|ZP_03345724.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Typhi str. E00-7866]
 gi|213426153|ref|ZP_03358903.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Typhi str. E02-1180]
 gi|213585685|ref|ZP_03367511.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-0664]
 gi|213621330|ref|ZP_03374113.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
 gi|213646585|ref|ZP_03376638.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Typhi str. J185]
 gi|213855584|ref|ZP_03383824.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Typhi str. M223]
 gi|238911187|ref|ZP_04655024.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Tennessee str. CDC07-0191]
 gi|289823732|ref|ZP_06543344.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-3139]
 gi|22095576|sp|Q8Z9G7|DDLB_SALTI RecName: Full=D-alanine--D-alanine ligase B; AltName:
           Full=D-Ala-D-Ala ligase B; AltName: Full=D-alanylalanine
           synthetase B
 gi|81359629|sp|Q5PDC6|DDL_SALPA RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|229486018|sp|B5BLC4|DDL_SALPK RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|25293550|pir||AG0518 D-alanine,D-alanine ligase B [imported] - Salmonella enterica
           subsp. enterica serovar Typhi (strain CT18)
 gi|16501415|emb|CAD01287.1| D-alanine:D-alanine ligase B [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29136299|gb|AAO67866.1| D-alanine:D-alanine ligase B [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|56126659|gb|AAV76165.1| D-alanine:D-alanine ligase B [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|194409632|gb|ACF69851.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|194458012|gb|EDX46851.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|197092813|emb|CAR58239.1| D-alanine:D-alanine ligase B [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|205324448|gb|EDZ12287.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|205335047|gb|EDZ21811.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|205337394|gb|EDZ24158.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|205348781|gb|EDZ35412.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
          Length = 306

 Score =  179 bits (453), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 110/303 (36%), Positives = 167/303 (55%), Gaps = 13/303 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+ER+VSL+SG A  + L + G     +D        L  +     F  LHG
Sbjct: 5   IAVLLGGTSAERDVSLNSGAAVLAGLREGGIDAHPVDPQEVDVAQLKAMGFQKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR----- 115
             GEDG +Q +LELL +PYT SG++ASALSMDK+RSK +    G+PV P + + R     
Sbjct: 65  RGGEDGTLQGMLELLGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124

Query: 116 -FTMDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
             + + +  IS    P ++KP + GSS+G+  + ++ ++   L  S ++ H D++LIE++
Sbjct: 125 GLSEEQKARISALGLPLIVKPSREGSSVGMTKVVEENALQGAL--SLAFQHDDEILIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L    I  P   FY YE KY S  + +  PA +       +Q L 
Sbjct: 183 LCGPEFTVAIVGEEILPSIRIQ-PAGTFYDYEAKYLSDETQYFCPAGLEASQEAALQSLV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A +A+GC G  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 242 LQAWKALGCTGWGRIDVMLDS-DGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300

Query: 292 MVE 294
           ++E
Sbjct: 301 ILE 303


>gi|237729390|ref|ZP_04559871.1| D-alanine-D-alanine ligase [Citrobacter sp. 30_2]
 gi|226909119|gb|EEH95037.1| D-alanine-D-alanine ligase [Citrobacter sp. 30_2]
          Length = 306

 Score =  179 bits (453), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 105/303 (34%), Positives = 170/303 (56%), Gaps = 13/303 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+ER+VSL+SG A  + L + G     ID       +L  +     F  LHG
Sbjct: 5   IAVLLGGTSAERDVSLNSGAAVLAGLREGGVDAHPIDPKEVDVTLLKSMGFQKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119
             GEDG +Q +LEL+ +PYT SG++ASA+SMDK+RSK +    G+PV P + + R   + 
Sbjct: 65  RGGEDGTLQGMLELIGLPYTGSGVMASAISMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124

Query: 120 --SQHLISP------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
             S  +++       P ++KP + GSS+G+  ++++ ++   L  + ++ H +++LIE++
Sbjct: 125 GLSDEVVTEISALGLPLIVKPSREGSSVGMSKVEEENALHGAL--ALAFQHDEEVLIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L    I  P   FY YE KY S  + +  PA + ++    +Q L 
Sbjct: 183 LSGPEFTVAILGEEILPSIRIQ-PAGTFYDYEAKYLSDETQYFCPAGLEVEQEARLQELV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A   +GC+G  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 242 LKAWTTLGCKGWGRIDVMLDS-DGQFYLLEANTSPGMTSHSLVPMAARQAGLSFSQLVVR 300

Query: 292 MVE 294
           ++E
Sbjct: 301 ILE 303


>gi|115373733|ref|ZP_01461027.1| D-alanine--D-alanine ligase [Stigmatella aurantiaca DW4/3-1]
 gi|310823632|ref|YP_003955990.1| d-alanine--d-alanine ligase [Stigmatella aurantiaca DW4/3-1]
 gi|115369280|gb|EAU68221.1| D-alanine--D-alanine ligase [Stigmatella aurantiaca DW4/3-1]
 gi|309396704|gb|ADO74163.1| D-alanine--D-alanine ligase [Stigmatella aurantiaca DW4/3-1]
          Length = 326

 Score =  179 bits (453), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 109/293 (37%), Positives = 171/293 (58%), Gaps = 9/293 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VLMGG   EREVSL +G+A  +ALE  G  V+++     +  +L   + D+AF  LHG
Sbjct: 5   VGVLMGGWGEEREVSLKTGEAAVAALEAEGHTVTRVFAGPGLDRILRTAELDVAFLALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---FT 117
             GEDG VQ +LELLE+PYT SG+LASAL+M+K  +K++     +P      + R     
Sbjct: 65  RMGEDGKVQGLLELLELPYTGSGVLASALAMNKPFAKKLFRLHNLPTPQGYRIGRDELAL 124

Query: 118 MDSQHL-ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
           ++ +H  +  P V+KP  GGSSLG+ ++++ +++   + ++  +  G + L+E++V G E
Sbjct: 125 LEERHGDLGFPCVVKPACGGSSLGLALVREPEALAPAVAEACRY--GGEALVERFVRGRE 182

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +T G++G   L   EIA P+  F  YE KY    + + LP ++       V+ LA  A +
Sbjct: 183 VTVGILGGEVLGSCEIAAPREGF-DYEAKYKG-GTNYFLPPRLSATRLANVESLALSAWR 240

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           A+GCRG  R D +     +  F LE+N  PG+TP S+ P++AA  G  F +L+
Sbjct: 241 ALGCRGYGRVDLICSE-EQNDFVLEVNTLPGLTPTSLLPKIAAQRGIGFAQLV 292


>gi|56476225|ref|YP_157814.1| D-alanine--D-alanine ligase [Aromatoleum aromaticum EbN1]
 gi|81358258|sp|Q5P6Z8|DDL_AZOSE RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|56312268|emb|CAI06913.1| D-alanine--D-alanine ligase (EC 6.3.2.4) (D-alanylalanine
           synthetase) (D-Ala-D-Ala ligase), gene: DDL OR DDLB OR
           NE0994 [Aromatoleum aromaticum EbN1]
          Length = 309

 Score =  179 bits (453), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 109/299 (36%), Positives = 167/299 (55%), Gaps = 8/299 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL SG A  +AL+ AG      D  +    +L     D AF  LHG
Sbjct: 13  VAVLLGGTSAEREVSLMSGGAVLAALQAAGVDAHGFDPAQQDLHILKEQGFDRAFIALHG 72

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG VQ +LELL+IPYT SG++ASAL+MDK R+K V ++CG+P  P   +     D 
Sbjct: 73  RGGEDGTVQGLLELLKIPYTGSGVMASALAMDKWRTKMVWAACGLPT-PRYAILAGDTDW 131

Query: 121 QHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
           + +++    P  +KP+  GSS+G   +     +     +++ ++  D +L E+++ G EL
Sbjct: 132 EAVVAELGLPIFVKPVHEGSSMGATKVTAASQLKAAWERAARFD--DLVLAEEFIVGAEL 189

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           T   + + +L V  I  P    Y Y+ KY +  + ++ P+ +P +  + +Q L   + +A
Sbjct: 190 TVPFLAERALPVIRIEAPGGK-YDYQNKYFTDETRYLCPSGLPAEQEQALQALVMKSARA 248

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +GCRG  R+D +     R  + LE+N  PGMT  S+ P  A   G  F  L L ++EDA
Sbjct: 249 LGCRGWGRADLMLTGDGRP-YLLEMNTSPGMTGHSLVPMAAKAVGLDFTALCLAILEDA 306


>gi|90407786|ref|ZP_01215964.1| D-alanine-D-alanine ligase B [Psychromonas sp. CNPT3]
 gi|90311146|gb|EAS39253.1| D-alanine-D-alanine ligase B [Psychromonas sp. CNPT3]
          Length = 307

 Score =  179 bits (453), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 110/296 (37%), Positives = 167/296 (56%), Gaps = 10/296 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL SG+A  SAL   G     ID        L     D AF VLHG
Sbjct: 8   VAVLFGGTSAEREVSLRSGQAVLSALVAQGINAIAIDPKIDDVTQLKAQGFDRAFIVLHG 67

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRF-- 116
             GEDG +Q +L  L+IPYT S +L+SA++MDK ++KQ+  S G+P      I+ N +  
Sbjct: 68  RGGEDGTIQGLLTYLQIPYTGSDVLSSAITMDKSKTKQIWKSVGLPTAKYQIIIKNHYDP 127

Query: 117 --TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
               D    +S   ++KP+  GSS+G+  +   + +   LL +  ++   ++L+E +++G
Sbjct: 128 SQAKDILKELSGTVMVKPVNEGSSIGMAKVDNVEDLNKALLDAFKFDK--KVLLETWIEG 185

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
            E T  ++  A+L   ++A   +DFY Y+ KY S  + +  P  +     + + +LA  A
Sbjct: 186 EEYTVSMLSGAALPAIKMAT-DNDFYDYQAKYQSTETRYYCPCGLDDQEMQTLNKLANAA 244

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +IGC+G  R DF+ D  +++ F LEIN  PGMT  S+ P+ A  AGYSF +L+L
Sbjct: 245 FSSIGCQGWGRVDFMRDT-NKQWFLLEINSVPGMTETSLVPKAAKQAGYSFEQLVL 299


>gi|146310302|ref|YP_001175376.1| D-alanine--D-alanine ligase [Enterobacter sp. 638]
 gi|145317178|gb|ABP59325.1| D-alanine--D-alanine ligase [Enterobacter sp. 638]
          Length = 306

 Score =  179 bits (453), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 108/305 (35%), Positives = 170/305 (55%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG S+ER+VSL+SG A  +AL + G     +D        L  +  D  F  LHG
Sbjct: 5   IAVLMGGTSAERDVSLNSGAAVLAALREGGVNAHPVDPKDIDVTRLKEMGFDKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +L+L+ +PYT SG++ASA+SMDK+RSK +    G+PV P + V R   +S
Sbjct: 65  RGGEDGTLQGLLDLIGMPYTGSGVMASAISMDKLRSKLLWQGAGLPVAPWVAVTRREFES 124

Query: 121 Q---------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       ++ P ++KP + GSS+G+   K D++  L    + ++ H +++LIE++
Sbjct: 125 GLEVGVNQRIEQLALPVIVKPSREGSSVGM--SKVDKADDLTSALALAFQHDEEVLIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L    I  P   FY YE KY S  + +  P+ +  +  +E++ L 
Sbjct: 183 LGGPEFTVAMLGEEILPSIRIQ-PAGTFYDYEAKYLSDETQYFCPSGLEAEREEELKALV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A   +GCRG  R D + D    + + LE N  PGMT  S+ P  A  AG +F +L++ 
Sbjct: 242 LKAWTVLGCRGWGRIDVMQDS-DGQFYLLEANTSPGMTSHSLVPMAARQAGMTFSQLVVR 300

Query: 292 MVEDA 296
           +++ A
Sbjct: 301 ILDQA 305


>gi|295098596|emb|CBK87686.1| D-alanine--D-alanine ligase [Enterobacter cloacae subsp. cloacae
           NCTC 9394]
          Length = 306

 Score =  178 bits (452), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 112/305 (36%), Positives = 170/305 (55%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL+SG A  + L + G     +D        L  +  D AF  LHG
Sbjct: 5   IAVLFGGTSAEREVSLNSGAAVLAGLREGGVDAHPVDPKEVDVTQLKAMGFDKAFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--FTM 118
             GEDG +Q +LEL+ +PYT SG++ASA+SMDK+RSK +     +PV P + + R  + M
Sbjct: 65  RGGEDGTLQGLLELIGMPYTGSGVMASAISMDKLRSKLLWQGADLPVAPWVALTRREYEM 124

Query: 119 ---DSQHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
              DS +     +  P ++KP + GSS+G+   K D+++ L    + ++ H +++LIE++
Sbjct: 125 GLSDSVNTRIAALGLPVIVKPSREGSSVGM--SKVDKAVDLADALALAFQHDEEVLIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L    I  P   FY YE KY S  + +  PA +  +   E+Q L 
Sbjct: 183 LSGPEFTVAMLGEEILPSIRIQ-PAGVFYDYEAKYLSDETQYFCPAGLEAEREAELQSLV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A   +GCRG  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 242 LKAWNVLGCRGWGRIDVMLDG-DGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300

Query: 292 MVEDA 296
           +++ A
Sbjct: 301 ILDQA 305


>gi|168464318|ref|ZP_02698221.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|194444863|ref|YP_002039362.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|207855644|ref|YP_002242295.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|194403526|gb|ACF63748.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|195632730|gb|EDX51184.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|206707447|emb|CAR31720.1| D-alanine:D-alanine ligase B [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
          Length = 306

 Score =  178 bits (452), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 110/303 (36%), Positives = 167/303 (55%), Gaps = 13/303 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+ER+VSL+SG A  + L + G     +D        L  +     F  LHG
Sbjct: 5   IAVLLGGTSAERDVSLNSGAAVLAGLREGGIDAHPVDPQEVDVAQLKAMGFQKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR----- 115
             GEDG +Q +LELL +PYT SG++ASALSMDK+RSK +    G+PV P + + R     
Sbjct: 65  RGGEDGTLQGMLELLGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124

Query: 116 -FTMDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
             + + +  IS    P ++KP + GSS+G+  + ++ ++   L  S ++ H D++LIE++
Sbjct: 125 GLSEEQKARISALGLPLIVKPSREGSSVGMTKVVEENALQGAL--SLAFQHDDEILIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L    I  P   FY YE KY S  + +  PA +       +Q L 
Sbjct: 183 LCGPEFTVAIVGEEILPSIRIQ-PAGTFYDYEAKYLSDETQYFCPAGLDASQEAALQSLV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A +A+GC G  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 242 LQAWKALGCTGWGRIDVMLDS-DGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300

Query: 292 MVE 294
           ++E
Sbjct: 301 ILE 303


>gi|256845950|ref|ZP_05551408.1| D-alanine-D-alanine ligase [Fusobacterium sp. 3_1_36A2]
 gi|256719509|gb|EEU33064.1| D-alanine-D-alanine ligase [Fusobacterium sp. 3_1_36A2]
          Length = 287

 Score =  178 bits (452), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 108/297 (36%), Positives = 166/297 (55%), Gaps = 19/297 (6%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD--LAFNVL 58
           +AV MGG SSE+E+SL SG+A   +L+  G+    + +D     V A L  D  LA+ VL
Sbjct: 3   IAVFMGGTSSEKEISLKSGEAVLESLKKQGYDAYGVILDEK-NQVTAFLDNDYDLAYLVL 61

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
           HG  GE+G +QA+L++L   YT SG+LASA++MDK ++KQ+  S G+    +        
Sbjct: 62  HGGNGENGKIQAVLDILGKKYTGSGVLASAITMDKDKTKQIAQSVGIKTPKAYRT----- 116

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
             + +   P +IKP+  GSS G+ +    +          +     + +IE Y+ G ELT
Sbjct: 117 -VEEIEKFPVIIKPVDEGSSKGVFLCNNREE------AEKAVKKIVRPIIEDYIVGEELT 169

Query: 179 CGVMGDASLDVTEIAVPKSD-FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
            GV+   +L V +I +P++D  Y Y+ KY+   S H  PAKI    YKE  ++A   H  
Sbjct: 170 VGVLNGEALGVLKI-IPQADVLYDYDSKYAKGGSIHEFPAKIENKSYKEAMKIAEKIHSE 228

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            G +G SRSDF+      ++++LE+N  PGMT  S+ P++A   GY+F +++   VE
Sbjct: 229 FGMKGTSRSDFILS--EGELYFLEVNSSPGMTKTSLIPDLATLKGYTFDDVVRITVE 283


>gi|50122735|ref|YP_051902.1| D-alanine--D-alanine ligase [Pectobacterium atrosepticum SCRI1043]
 gi|81643890|sp|Q6D0I5|DDL_ERWCT RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|49613261|emb|CAG76712.1| D-alanine--D-alanine ligase B [Pectobacterium atrosepticum
           SCRI1043]
          Length = 306

 Score =  178 bits (452), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 109/304 (35%), Positives = 171/304 (56%), Gaps = 15/304 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL SG+A  + L++AG     +D        L        F  LHG
Sbjct: 5   VAVLLGGTSAEREVSLLSGQAVLAGLKEAGINAHAVDTRDFPVTTLKEEGFTNVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---FT 117
             GEDG +Q +LE L +PYT SG++ASAL+MDK+R+KQV  + G+PV P + ++R     
Sbjct: 65  RGGEDGTLQGVLEFLGLPYTGSGVMASALTMDKLRTKQVWQAVGLPVSPYVALDRRQYLD 124

Query: 118 MDSQHLISP------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
            ++  L++       P ++KP + GSS+G+  +     +P  L    ++ H D +L+E++
Sbjct: 125 TEANTLLAQFTHLGLPLIVKPSREGSSVGMSKVNTLSDLPAAL--EEAFRHDDDVLVEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++GD  L    I  P   FY YE KY S ++ +  P+ +  +  + +  LA
Sbjct: 183 LSGPEYTVAILGDEVLPSIRIQ-PAGTFYDYEAKYLSDDTQYFCPSGLSDEQEQALAALA 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             A++A+ C G  R DF+ D  S   F+ LE+N  PGMT  S+ P  A   G +F +L++
Sbjct: 242 MAAYRAVDCSGWGRVDFMLD--SDDAFYLLEVNTSPGMTSHSLVPMAARQRGLTFSQLVV 299

Query: 291 WMVE 294
            ++E
Sbjct: 300 KILE 303


>gi|197247549|ref|YP_002145116.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|197211252|gb|ACH48649.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
          Length = 306

 Score =  178 bits (452), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 110/303 (36%), Positives = 167/303 (55%), Gaps = 13/303 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+ER+VSL+SG A  + L + G     +D        L  +     F  LHG
Sbjct: 5   IAVLLGGTSAERDVSLNSGAAVLAGLREGGIDAYPVDPQEVDVAQLKAMGFQKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR----- 115
             GEDG +Q +LELL +PYT SG++ASALSMDK+RSK +    G+PV P + + R     
Sbjct: 65  RGGEDGTLQGMLELLGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124

Query: 116 -FTMDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
             + + +  IS    P ++KP + GSS+G+  + ++ ++   L  S ++ H D++LIE++
Sbjct: 125 GLSEEQKARISALGLPLIVKPSREGSSVGMTKVVEENALQGAL--SLAFQHDDEILIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L    I  P   FY YE KY S  + +  PA +       +Q L 
Sbjct: 183 LCGPEFTVAIVGEEILPSIRIQ-PAGTFYDYEAKYLSDETQYFCPAGLEASQEAALQSLV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A +A+GC G  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 242 LQAWKALGCTGWGRIDVMLDS-DGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300

Query: 292 MVE 294
           ++E
Sbjct: 301 ILE 303


>gi|227824970|ref|ZP_03989802.1| conserved hypothetical protein [Acidaminococcus sp. D21]
 gi|226905469|gb|EEH91387.1| conserved hypothetical protein [Acidaminococcus sp. D21]
          Length = 312

 Score =  178 bits (451), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 110/308 (35%), Positives = 177/308 (57%), Gaps = 17/308 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSV---GLVLAHLKPDLAFNV 57
           + V+MGG S EREVSL++G A   AL++ G+    ID+D S+    +  A +K  + FN 
Sbjct: 7   IGVVMGGPSKEREVSLNTGSAIVEALKEKGYDAVPIDLDPSLFPSQIEDAGVK--VVFNA 64

Query: 58  LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---N 114
           +HG +GEDG +QA+LE+L +PYT SG+L+SA++M+K  +K++  + GV     + +   +
Sbjct: 65  VHGLYGEDGRLQAVLEMLGVPYTGSGVLSSAIAMNKFYTKRMFEANGVKTANCLYLTDKD 124

Query: 115 RFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
           R T   D    +  P V+KP + GSS+G+ ++KK++   LD     ++++G  +L E + 
Sbjct: 125 RQTAKQDIIRKLGIPCVVKPAEQGSSIGVTIVKKEED--LDKALEEAFSYGKLVLAEAFF 182

Query: 173 DGIELTCGVMGDASLDVTEIAV----PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
            G E+  GVM D+S +   + +    P  DFY Y  KY+   +T+  PA     + K +Q
Sbjct: 183 TGKEVAAGVMMDSSGNPIAMPLVLIEPHVDFYDYHNKYTKGATTYTCPAPFDECLTKALQ 242

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
             A  A++A+GC G++R D + D        LE+N  PGMT  S+ P+ A   G SF +L
Sbjct: 243 EEAVKAYKALGCSGVARVDEMVDA-EGNFICLEVNTIPGMTATSLVPKAAKAMGLSFPDL 301

Query: 289 LLWMVEDA 296
              ++E A
Sbjct: 302 CEKILETA 309


>gi|146305959|ref|YP_001186424.1| D-alanine--D-alanine ligase [Pseudomonas mendocina ymp]
 gi|190359205|sp|A4XQS6|DDL_PSEMY RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|145574160|gb|ABP83692.1| D-alanine--D-alanine ligase [Pseudomonas mendocina ymp]
          Length = 313

 Score =  178 bits (451), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 116/300 (38%), Positives = 171/300 (57%), Gaps = 10/300 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL SG A  SAL+ AG     IDV       LA  K D AF VLHG
Sbjct: 15  VAVLFGGKSAEREVSLKSGNAVLSALQAAGVDAFGIDVGDDFLQRLASEKIDRAFIVLHG 74

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LE   IPYT SGILASAL+MDK+R+KQV  S G+P  P   V     D 
Sbjct: 75  RGGEDGSMQGLLECAGIPYTGSGILASALAMDKLRTKQVWHSLGLPT-PRHAVLTSQADC 133

Query: 121 QHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
           +   +    P ++KP   GSS+G+  ++  +++      ++ ++   Q+L+EQ++ G E 
Sbjct: 134 EAAAAELGFPLIVKPAHEGSSIGMAKVESVEALIAAWQDAARYD--SQVLVEQWIAGPEY 191

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           T  V+    L    +  P S FY Y+ KY + ++ + +P  +  +   E++ L   A +A
Sbjct: 192 TVAVLRGEVLPPIGLGTPHS-FYDYDAKYLADDTQYRIPCGLSAEKEAELKELTARACEA 250

Query: 238 IGCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +G +G +R+D + D   +  FW LE+N  PGMT  S+ P  A  AG  F++L+L ++ D+
Sbjct: 251 VGTQGWARADVMQDASGQ--FWLLEVNTVPGMTDHSLVPMAARAAGLDFQQLVLAILADS 308


>gi|94270595|ref|ZP_01291776.1| D-alanine--D-alanine ligase [delta proteobacterium MLMS-1]
 gi|93450744|gb|EAT01808.1| D-alanine--D-alanine ligase [delta proteobacterium MLMS-1]
          Length = 314

 Score =  178 bits (451), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 110/296 (37%), Positives = 172/296 (58%), Gaps = 17/296 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP-DLAFNVLH 59
           +A+L GG S+EREVSLS       AL  + +++ + D    +  + A     D+AF +LH
Sbjct: 9   VALLAGGKSAEREVSLSGAAGVEKALAGSRYRLRRYDPATDLPRLAADAASIDVAFVLLH 68

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G  GEDG +Q  L+LL IPY  SG+L SAL+MDK  +K++    G+ V P+  + R    
Sbjct: 69  GTLGEDGTIQGFLDLLGIPYQGSGVLGSALAMDKDLAKELYRLAGLRV-PAWEMARPADI 127

Query: 120 SQ-----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
           ++      L+SPP V+KP++ GSSLG+ ++  ++ +   L   +++ H DQ+++EQ+V G
Sbjct: 128 AEPRRLLALLSPPLVVKPVRQGSSLGMSIVDAEEELAPAL--ETAFAHDDQVMVEQFVAG 185

Query: 175 IELTCGVMGD---ASLDVTEIAVPKSD--FYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
            E+T GV+G+    +L V EI +P     F+ Y+ KY    S  V PA++P  +  +VQ 
Sbjct: 186 REVTGGVLGNDQLTALPVVEI-IPGEQYRFFDYQAKYQPGASREVCPAELPPAVTAQVQE 244

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285
            A  AH+ +  +G SR+D +    +  ++ LE N  PGMTP S+FP+ AA  G  F
Sbjct: 245 WACRAHRVLRLKGYSRTDMIL--AADGLYVLETNTIPGMTPTSLFPQAAAAHGLDF 298


>gi|37527516|ref|NP_930860.1| D-alanine--D-alanine ligase [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|39930824|sp|Q7N149|DDL_PHOLL RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|36786951|emb|CAE16025.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetase)
           (D-Ala-D-Ala ligase) [Photorhabdus luminescens subsp.
           laumondii TTO1]
          Length = 306

 Score =  178 bits (451), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 110/304 (36%), Positives = 170/304 (55%), Gaps = 15/304 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL SG+A  + L +AG     +D        L     +  F  LHG
Sbjct: 5   VAVLLGGTSAEREVSLLSGQAVLAGLREAGIDAHPVDTKDFPVTQLKEAGFEKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN-----R 115
             GEDG +Q +LE L++PYT SG++ASALSMDK+R+KQV    G+ V P + +N     R
Sbjct: 65  RGGEDGTLQGVLEFLQLPYTGSGVMASALSMDKLRTKQVWQGIGLTVSPYVSINSQQVER 124

Query: 116 FTMDSQHL-----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            T DSQ       +  P ++KP   GSS+G+  + +   +   L   +++ +   LL+E+
Sbjct: 125 LT-DSQLQEYVADLGLPLIVKPSLEGSSVGMTKVNEISELRGAL--EAAFRYDVDLLVEK 181

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
           ++ G E T  ++GD +L    I  P + FY Y+ KY S  + +  P+ +  +  +++  L
Sbjct: 182 WLHGPEYTVAILGDTALPSIRIQ-PAAVFYDYDAKYWSEETQYFCPSGLSDEKEQQLAEL 240

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A  A+Q++GC G  R D + D      + LE+N  PGMT  S+ P  A  AG SF +L++
Sbjct: 241 ALKAYQSVGCSGWGRVDVMMDT-DGDFYLLEVNTSPGMTSHSLVPMAARQAGLSFSQLVV 299

Query: 291 WMVE 294
            ++E
Sbjct: 300 KILE 303


>gi|90410346|ref|ZP_01218362.1| hypothetical D-alanine-D-alanine ligase B [Photobacterium profundum
           3TCK]
 gi|90328587|gb|EAS44871.1| hypothetical D-alanine-D-alanine ligase B [Photobacterium profundum
           3TCK]
          Length = 304

 Score =  178 bits (451), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 109/303 (35%), Positives = 176/303 (58%), Gaps = 14/303 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VL+GG SSER VSL SG+   +A+E  G +   ID       ++   K D  F  LHG
Sbjct: 3   IGVLLGGESSERSVSLKSGECVVNAIESLGHEAISIDPKHIDVTLMGFFKLDKVFIALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT-MD 119
             GE G VQA+L+LL+IPYT SG LASA+S++K+ SK++  S  +     + +++   MD
Sbjct: 63  GIGESGHVQALLDLLKIPYTGSGTLASAMSLNKLNSKEIWQSNSLKSADWVTLHKHAPMD 122

Query: 120 --SQHLISP--PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS--SSWNHGDQLLIEQYVD 173
                L+S   P V+KP+  G S+G+  +  +     DLL++  +++ + D +LIE ++ 
Sbjct: 123 DIKAQLLSVVCPVVVKPISQGCSIGVSKVDNNA----DLLEAVITAFEYDDDILIESFIA 178

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           G E TC V+   +L + +I   +  F+ Y+ K+ S ++T+  P+ +  +  +++Q LA  
Sbjct: 179 GREYTCAVLNGEALPIVQIRSEQ--FFDYDAKFGSQSATYHCPSDLTSEQERDMQVLALN 236

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           A+ A+GCRG  R D + D  S  VF +E+N  PGMT  S+FP  A  AG SF +++  ++
Sbjct: 237 AYNALGCRGWGRVDTILDE-SGDVFLIEMNTIPGMTTRSVFPMAAKEAGLSFEQVISSLL 295

Query: 294 EDA 296
           + A
Sbjct: 296 DSA 298


>gi|204927234|ref|ZP_03218436.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|204323899|gb|EDZ09094.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
          Length = 306

 Score =  177 bits (450), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 109/303 (35%), Positives = 167/303 (55%), Gaps = 13/303 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+ER+VSL+SG A  + L + G     +D        L  +     F  LHG
Sbjct: 5   IAVLLGGTSAERDVSLNSGAAVLAGLREGGIDAHPVDPQEVDVAQLKAMGFQKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR----- 115
             GEDG +Q +LELL +PYT SG++ASALSMDK+RSK +    G+PV P + + R     
Sbjct: 65  RGGEDGTLQGMLELLGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124

Query: 116 -FTMDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
             + + +  IS    P ++KP + GSS+G+  + ++ ++   L  S ++ H D++L+E++
Sbjct: 125 GLSEEQKARISALGLPLIVKPSREGSSVGMTKVVEENALQGAL--SLAFQHDDEVLVEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L    I  P   FY YE KY S  + +  PA +       +Q L 
Sbjct: 183 LCGPEFTVAIVGEEILPSIRIQ-PAGTFYDYEAKYLSDETQYFCPAGLEASQEAALQSLV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A +A+GC G  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 242 LQAWKALGCTGWGRIDVMLDS-DGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300

Query: 292 MVE 294
           ++E
Sbjct: 301 ILE 303


>gi|302185267|ref|ZP_07261940.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. syringae 642]
          Length = 319

 Score =  177 bits (450), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 117/303 (38%), Positives = 171/303 (56%), Gaps = 8/303 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL+SG A   AL DAG     IDV       L   K D AF VLHG
Sbjct: 21  VAVLFGGKSAEREVSLNSGNAVLKALLDAGVDAFGIDVGDDFLQRLVSEKIDRAFIVLHG 80

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV--PVCPSILVNRFTM 118
             GEDG +Q +LE LEIPYT SG+LASAL+MDK+R+KQV  S G+  P+   I      +
Sbjct: 81  RGGEDGTMQGLLECLEIPYTGSGVLASALAMDKLRTKQVWQSLGLATPLHAVIENESDCI 140

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   +  P ++KP   GSS+G+  +     +      +S+++   Q+L+EQ++ G E T
Sbjct: 141 CAATELGLPLIVKPAHEGSSIGMAKVNSVDELIAAWKAASTYD--SQVLVEQWIQGPEFT 198

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +    L    +  P S FY Y+ KY + ++ + +P  +     +E+++LA  A +AI
Sbjct: 199 VASLRGQVLPPIGLGTPHS-FYDYDAKYLASDTQYRIPCGLGDAQEQELKQLAARACEAI 257

Query: 239 GCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           G  G +R+D + D   +  FW LE+N  PGMT  S+ P  A  AG  F++L+L ++ D+ 
Sbjct: 258 GIAGWARTDVMQDAQGK--FWLLEVNTVPGMTDHSLVPMAARAAGLDFQQLVLAILADSV 315

Query: 298 CLR 300
             R
Sbjct: 316 QAR 318


>gi|82703606|ref|YP_413172.1| D-alanine--D-alanine ligase [Nitrosospira multiformis ATCC 25196]
 gi|123543907|sp|Q2Y641|DDL_NITMU RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|82411671|gb|ABB75780.1| D-alanine--D-alanine ligase [Nitrosospira multiformis ATCC 25196]
          Length = 306

 Score =  177 bits (450), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 110/297 (37%), Positives = 164/297 (55%), Gaps = 16/297 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+ERE+SL SGKA   AL  +G      D        L       A   LHG
Sbjct: 10  VAVLLGGRSAEREISLESGKAVLDALRSSGVDAHPFDPSEQHMDALLQQGYTRAHIALHG 69

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---FT 117
            +GEDG VQ  LELL IPYT SG+LASAL+MDK R+K +  S G+     IL++    F 
Sbjct: 70  RYGEDGTVQGALELLGIPYTGSGVLASALAMDKWRTKLLWQSAGINTPRHILLDEQSDFD 129

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN----HGDQLLIEQYVD 173
             ++ L   P ++KP + GS++G+  +++   +      +++W+    H   +L EQ+++
Sbjct: 130 AVAKEL-GLPLIVKPSREGSTIGLSKVREAGEV------AAAWHLAARHDAMVLAEQFIE 182

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           G ELT  ++GD +L +  I V + D Y Y+ KY S  + +  P+ +  +    +++ A  
Sbjct: 183 GTELTASILGDVALPLVRIQV-EGDLYDYQAKYLSDKTQYFCPSGVSEEQECLIRKQALQ 241

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           AH+ +GC G  R D + D  S   ++LE N  PGMT  S+ P  A  AG SF EL+L
Sbjct: 242 AHRLLGCEGWGRVDLILDK-SGTPYFLEANTSPGMTTHSLVPMAAKAAGISFEELVL 297


>gi|303228450|ref|ZP_07315283.1| D-ala D-ala ligase N-terminal domain protein [Veillonella atypica
           ACS-134-V-Col7a]
 gi|303230853|ref|ZP_07317600.1| D-ala D-ala ligase N-terminal domain protein [Veillonella atypica
           ACS-049-V-Sch6]
 gi|302514613|gb|EFL56608.1| D-ala D-ala ligase N-terminal domain protein [Veillonella atypica
           ACS-049-V-Sch6]
 gi|302516952|gb|EFL58861.1| D-ala D-ala ligase N-terminal domain protein [Veillonella atypica
           ACS-134-V-Col7a]
          Length = 310

 Score =  177 bits (450), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 106/294 (36%), Positives = 166/294 (56%), Gaps = 12/294 (4%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLHGN 61
           VLMGG S+E EVS  +G A A AL   G+ VS ++++ R+V   + +LK D+ FN +HG 
Sbjct: 8   VLMGGPSAEAEVSRRTGAAIAEALISKGYHVSTLELNPRTVLQDIENLKGDVVFNAIHGR 67

Query: 62  FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ 121
           +GEDG +Q  LE+ EIPYT SGI+A ++ M+K  SK V     +P   SI  N      +
Sbjct: 68  YGEDGALQGALEMAEIPYTGSGIMAHSVGMNKKVSKDVFKGAHIPTAESISYNGNLQSKE 127

Query: 122 HLI-------SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
            +I       S P V+KP   GSS+G+ ++K++  +   + ++ +++    L++EQY++G
Sbjct: 128 DIIKDIESKFSLPVVLKPATQGSSIGVTIVKEENQLAKAVTEALTYD--PILVVEQYLNG 185

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
            E T  V+   +L + EI  P S  Y Y  KY++  + +++PA I  D+ KE+Q +  L 
Sbjct: 186 REFTVSVLDGKALAIIEIR-PHSGEYDYASKYTAGATDYLVPAPISADMTKEMQAIGELV 244

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           ++ +   G  R D + D     ++ LE N  PGMT  S+ P+ A   G  F EL
Sbjct: 245 YREVQASGAIRVDVMTDD-KDNMYVLEYNTIPGMTATSLVPKAAKEVGIDFPEL 297


>gi|86160192|ref|YP_466977.1| D-alanine--D-alanine ligase [Anaeromyxobacter dehalogenans 2CP-C]
 gi|123496862|sp|Q2IG33|DDL_ANADE RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|85776703|gb|ABC83540.1| D-alanine--D-alanine ligase [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 308

 Score =  177 bits (450), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 113/301 (37%), Positives = 168/301 (55%), Gaps = 8/301 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG SSEREVSL +G ACA AL   G  V  +DVD  V   L   + ++AF  LHG
Sbjct: 9   VAVLYGGRSSEREVSLRTGAACAEALRQKGHDVVLVDVDLEVAARLRAERVEVAFVALHG 68

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG +Q +LE + IPYT SG+LASA+ MDK  SK +  S G+ V    +  R    +
Sbjct: 69  RWGEDGSIQGLLESMAIPYTGSGVLASAMGMDKTVSKAIFRSLGLAVADYRVFPRAAAGA 128

Query: 121 QHLISPPY----VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
             +   P+    V+KP   GSS+G+ ++  + +  L      +  +   +++E+YV G E
Sbjct: 129 IGVDDLPFGLPCVVKPAGEGSSVGVHLV--NAAAELGPACRDAAGYAGDVIVERYVKGTE 186

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +   V+   +L   EI VP + FY Y  KY++  + +  PA+IP    + V   A  AH+
Sbjct: 187 VDVAVLEGKALGAIEI-VPANAFYDYAAKYTAGTTKYFYPARIPEAHVRAVMEAAEAAHR 245

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            IGC G++R DF+        + LE+N  PGMT  S+ P++AA  G SF +L   +++ A
Sbjct: 246 GIGCSGVTRVDFIV-AADGTPYILEVNTLPGMTATSLVPKIAAGLGLSFPDLCDRILDGA 304

Query: 297 S 297
           +
Sbjct: 305 A 305


>gi|37519866|ref|NP_923243.1| D-alanine--D-alanine ligase [Gloeobacter violaceus PCC 7421]
 gi|39930828|sp|Q7NNW1|DDL_GLOVI RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|35210858|dbj|BAC88238.1| D-alanine--D-alanine ligase [Gloeobacter violaceus PCC 7421]
          Length = 302

 Score =  177 bits (450), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 104/299 (34%), Positives = 164/299 (54%), Gaps = 8/299 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VL G  S EREVSL SG+A  +ALE  G +V+ +D    + + L    PD  +  LHG
Sbjct: 3   ITVLSGSDSPEREVSLVSGRAVQAALETLGHEVTMVDPGPDLPVRLLENPPDFVWIALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
           + GE+G +Q +L+ L +PY  SG+ ASA++MDK+ SK++  + G+P     +       S
Sbjct: 63  DKGENGKLQGLLDWLGLPYNGSGVTASAIAMDKVVSKRLFVAEGIPTPAYRVAEAVPQVS 122

Query: 121 Q-----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175
           +       +  P V+KP  GGS++G+ + ++   +P  +    +  +  Q+LIEQY+ G 
Sbjct: 123 ECQAWLAALGSPVVVKPADGGSTVGVTIAREAGHLPEAV--RLALQYSPQVLIEQYIPGQ 180

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
           E+T  ++    L   EI     DFY YE KY+   S H++P  +  D+ K     A+ A 
Sbjct: 181 EITVALLDGLVLPAIEIVPQGRDFYDYEAKYAPGGSRHLIPPNLAADVLKASVDAAYRAC 240

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           +A+G  G+ R+D   DP  R  + LE+N  PGMT  S+ PE A  AG  F +L+  +++
Sbjct: 241 RAVGSTGLVRADVRVDPEGRP-WVLEVNTLPGMTATSLAPEAAQAAGIDFEQLIQRIID 298


>gi|296101255|ref|YP_003611401.1| D-alanine--D-alanine ligase [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295055714|gb|ADF60452.1| D-alanine--D-alanine ligase [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
          Length = 306

 Score =  177 bits (449), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 110/305 (36%), Positives = 168/305 (55%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL+SG A  + L +AG     +D        L  +  D  F  LHG
Sbjct: 5   IAVLSGGTSAEREVSLNSGAAVLAGLREAGVNAHLVDPKEVDVTQLKAMGFDKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--FTM 118
             GEDG +Q +L+L+ +PYT SG++ASA+SMDK+RSK +    G+PV P + + R  F M
Sbjct: 65  RGGEDGTLQGLLDLIGMPYTGSGVMASAISMDKLRSKLLWQGAGLPVAPWVALTRREFEM 124

Query: 119 DSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
             Q  ++        P ++KP + GSS+G+   K D++  L    + ++ H +++LIE++
Sbjct: 125 GLQDSVNARIAELGLPVIVKPSREGSSVGM--SKVDKADDLSSALAVAFQHDEEVLIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L    I  P   FY YE KY S  + +  PA +  +   ++Q L 
Sbjct: 183 LSGPEFTVAMLGEEILPSIRIQ-PAGVFYDYEAKYLSDETQYFCPAGLEAEREADLQSLV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A   +GC G  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 242 LKAWHVLGCSGWGRIDVMLDS-DGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300

Query: 292 MVEDA 296
           +++ A
Sbjct: 301 ILDQA 305


>gi|283835154|ref|ZP_06354895.1| D-alanine--D-alanine ligase B [Citrobacter youngae ATCC 29220]
 gi|291069454|gb|EFE07563.1| D-alanine--D-alanine ligase B [Citrobacter youngae ATCC 29220]
          Length = 306

 Score =  177 bits (449), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 106/303 (34%), Positives = 168/303 (55%), Gaps = 13/303 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL+SG A  + L + G     +D       +L  +     F  LHG
Sbjct: 5   IAVLSGGTSAEREVSLNSGAAVLAGLREGGVDAHLVDPKEVDVTLLKSMGFQKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119
             GEDG +Q +LE + +PYT SG++ASA+SMDK+RSK +    G+PV P + + R   + 
Sbjct: 65  RGGEDGTLQGMLEQIGLPYTGSGVMASAISMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124

Query: 120 --SQHLISP------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
             S  L++       P ++KP + GSS+G+  +++  ++   L  + ++ H +++LIE++
Sbjct: 125 GLSDELVTKISALGLPLIVKPSREGSSVGMSKVEEQNALQGAL--ALAFQHDEEVLIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L    I  P   FY YE KY S  + +  PA +  +   ++Q L 
Sbjct: 183 LSGPEFTVALLGEEILPSIRIQ-PAGTFYDYEAKYLSDETQYFCPAGLEAEQEAQLQELV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A  A+GC+G  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 242 LKAWTALGCKGWGRIDVMLDS-DGQFYLLEANTSPGMTSHSLVPMAARQAGLSFSQLVVR 300

Query: 292 MVE 294
           ++E
Sbjct: 301 ILE 303


>gi|294102452|ref|YP_003554310.1| D-alanine/D-alanine ligase [Aminobacterium colombiense DSM 12261]
 gi|293617432|gb|ADE57586.1| D-alanine/D-alanine ligase [Aminobacterium colombiense DSM 12261]
          Length = 328

 Score =  177 bits (449), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 112/311 (36%), Positives = 171/311 (54%), Gaps = 28/311 (9%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD--------RSVGLVLAHLKPD 52
           +AVL GG   EREVSL SG A  SALE+AGFKV   D+         R  G +      D
Sbjct: 17  VAVLYGGDGPEREVSLKSGAAVVSALEEAGFKVVPFDITDLGQLSDLRKTGHI------D 70

Query: 53  LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
             F  LHG++GEDG VQ+ L+ L +PY+ SG LA  LSMDK  +K +++  GVP    +L
Sbjct: 71  SVFIALHGSWGEDGRVQSALDALRLPYSGSGSLACCLSMDKAATKGLLNLFGVPTPEGVL 130

Query: 113 V---NRFTMD-SQHLISPPY--VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQL 166
           V   + F+++ ++H     +  V+KP  GGS+LG+ V+   Q +      + +W +  + 
Sbjct: 131 VLKGSSFSLEKARHFAERHHSVVVKPCNGGSTLGVTVVHNSQGLSDAF--NEAWKYDSRC 188

Query: 167 LIEQYVDGIELTCGVMGDASL--DVTEIAV-PKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           +IE+Y+DG++L   V         + E+ + P+  FY Y+ KY+   + +++PA     I
Sbjct: 189 VIEKYIDGVDLAVTVWKQKGYLEALPEVMICPEKGFYDYDSKYTPGKTRYIVPAPFDPSI 248

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAG 282
             ++ ++A  A +A+ C G +R DF  +   +   W LE+N  PGMT  S+ P+ AA AG
Sbjct: 249 RSDIHQMACRAFEALSCEGYARVDFRVE--EKGTPWVLEVNTAPGMTGTSLTPKAAAAAG 306

Query: 283 YSFRELLLWMV 293
           Y F   L  +V
Sbjct: 307 YDFPAFLSHVV 317


>gi|166710654|ref|ZP_02241861.1| D-alanine--D-alanine ligase [Xanthomonas oryzae pv. oryzicola
           BLS256]
          Length = 318

 Score =  177 bits (449), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 116/300 (38%), Positives = 169/300 (56%), Gaps = 12/300 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG SSEREVSL+SG     AL   G     +D   ++   L   + D  FNVLHG
Sbjct: 19  VAVLLGGTSSEREVSLNSGSNVLEALRARGVDAQPVDGIAALAKALVAQQFDRVFNVLHG 78

Query: 61  NFG--EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV--PVCPSILVNRF 116
           + G  EDG+VQ ++E   +PYT S +L SALSMDK+R+KQV  S G+  P    +     
Sbjct: 79  HNGGGEDGIVQGLMEAFGVPYTGSDVLGSALSMDKIRTKQVWLSLGLSTPRYARLAAGTS 138

Query: 117 TMD---SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
             D   +   I  P ++KP   GSS+G+  +  DQ+   D +  ++   G  LL+EQ ++
Sbjct: 139 AADIHAAAQQIGLPVIVKPANEGSSVGVSRVF-DQAQLEDAVTLAARYDG-ALLMEQLIE 196

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           G ELT  V+GDA+L    I VPK  +Y Y  KY + ++ ++ P  +  +   ++++LA  
Sbjct: 197 GDELTVAVLGDAALPSIRI-VPKGQWYDYNAKYIAEDTQYLCPG-LEGEPEAQIRQLALD 254

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           A +A GCRG  R D + D  S +++ LE+N  PGMT  S+ P+ A   G  F E L+W V
Sbjct: 255 AFRAAGCRGWGRVDVMRDGSSGQLYLLEVNTAPGMTSHSLVPKAARQLGIDFEE-LVWRV 313


>gi|298369633|ref|ZP_06980950.1| D-alanine--D-alanine ligase B [Neisseria sp. oral taxon 014 str.
           F0314]
 gi|298282190|gb|EFI23678.1| D-alanine--D-alanine ligase B [Neisseria sp. oral taxon 014 str.
           F0314]
          Length = 303

 Score =  177 bits (448), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 116/302 (38%), Positives = 168/302 (55%), Gaps = 14/302 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD---LAFNV 57
           +AVLMGG SSER VSL SG A  +AL+  G      D   +    LA LK      AFN+
Sbjct: 7   VAVLMGGFSSERNVSLDSGAAIVAALKGRGVDAHAFDPKETP---LADLKTQGFQTAFNI 63

Query: 58  LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117
           LHG +GEDG+VQ  LEL  IPYT SG+ ASA+ MDK R K +  + G+PV P   V R  
Sbjct: 64  LHGTYGEDGVVQGTLELFGIPYTGSGVAASAIGMDKYRCKLIWQALGLPV-PEFAVLRED 122

Query: 118 MDSQHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
            D + +   +  P  +KP   GSS+G++ +K+   +  D+        G +++ E+++ G
Sbjct: 123 TDFEAVEKRLGLPMFVKPANEGSSVGVVKVKEKGRLK-DVYAELKHMKG-EIIAERFIGG 180

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
            E +C V+G   L    I VP ++FY YE KY+  ++ +  P+ +     + ++ LA   
Sbjct: 181 GEYSCPVLGGRGLPSILI-VPATEFYDYEAKYNRDDTVYRCPSDLNAADEELMRELAVRG 239

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            +AIG  G  R DFL D L  K++ LEIN  PGMT  S+ P+ AA  G  F +L + +++
Sbjct: 240 AEAIGAEGCVRVDFLKD-LDGKLYLLEINTLPGMTSHSLVPKSAAQIGMDFPDLCIEILK 298

Query: 295 DA 296
            A
Sbjct: 299 TA 300


>gi|104783451|ref|YP_609949.1| D-alanine--D-alanine ligase [Pseudomonas entomophila L48]
 gi|122401969|sp|Q1I5C0|DDL_PSEE4 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|95112438|emb|CAK17165.1| D-alanine-D-alanine ligase B [Pseudomonas entomophila L48]
          Length = 318

 Score =  177 bits (448), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 118/304 (38%), Positives = 166/304 (54%), Gaps = 10/304 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL SG A   AL  AG  V  IDV   +   L + K D AF +LHG
Sbjct: 20  VAVLYGGKSAEREVSLKSGAAVIEALTSAGVDVVAIDVGDDLLARLQNEKIDRAFIILHG 79

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119
             GEDG +Q +LE L IPYT SGILASAL+MDK+R+KQV  S G+P  P   V     D 
Sbjct: 80  RGGEDGSMQGLLECLGIPYTGSGILASALAMDKLRTKQVWQSLGIPT-PRHAVLASEQDC 138

Query: 120 --SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
             +   +  P ++KP   GSS+G+  +  +Q +      ++ ++   Q+L+EQ++ G E 
Sbjct: 139 VAASAELGFPLIVKPAHEGSSIGMAKVNSEQELVAAWKDAAKYD--SQVLVEQWIHGPEF 196

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           T  V+    L    +  P   FY Y+ KY + ++ + +P  +     +E+  L   A  A
Sbjct: 197 TIAVLRGQVLPPIALGTPHV-FYDYDAKYIANDTQYRIPCGLDSVKEQELIDLTARACDA 255

Query: 238 IGCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           IG  G  R D + D   R  FW LE+N  PGMT  S+ P  A  AG  F++L+L ++ D+
Sbjct: 256 IGIEGWGRLDVMQDEQGR--FWLLEVNTAPGMTDHSLVPMAARAAGLDFQQLVLAILADS 313

Query: 297 SCLR 300
              R
Sbjct: 314 VATR 317


>gi|240949725|ref|ZP_04754057.1| D-alanine--D-alanine ligase [Actinobacillus minor NM305]
 gi|240295757|gb|EER46444.1| D-alanine--D-alanine ligase [Actinobacillus minor NM305]
          Length = 303

 Score =  177 bits (448), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 109/298 (36%), Positives = 170/298 (57%), Gaps = 9/298 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG+S+EREVSL+SGK+   AL+  G+ V  ID+       L        FN+LHG
Sbjct: 8   IAVLFGGVSAEREVSLNSGKSVFEALQSLGYNVEAIDIKEFPIEKLKEKGIQRVFNILHG 67

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF-TMD 119
             GE+G++Q  LE L IPYT  G++ASA+++DK R+K + ++ G+P     +V R   ++
Sbjct: 68  GIGENGVLQGALEQLGIPYTGCGVMASAITLDKFRTKLLWNAVGLPTAAMEVVRRGQAVN 127

Query: 120 SQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
           S  +I+    P  +KP   GSS+G+  +K  + +   + ++  ++    +L+E+ + G E
Sbjct: 128 SDEIIAKLGLPLFVKPASEGSSVGVSKVKTAEQLLPAIEEALKYD--SIVLVEENLAGAE 185

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
            +  V+    L   +I +P  +FY Y  KY S N+ +V+PA +  D   EV +L   A+ 
Sbjct: 186 YSVPVLDGEVLPAVQI-IPDGEFYDYHAKYISDNTQYVVPA-LNADRQAEVAKLVKQAYD 243

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            +GCRG SR D + D        +E+N  PGMT  SIFP+ AA  GYSF  L+  ++E
Sbjct: 244 VVGCRGWSRIDVMEDG-EGNFRLVEVNTCPGMTSHSIFPKSAATVGYSFERLVERVLE 300


>gi|28871541|ref|NP_794160.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|39931109|sp|Q87WY7|DDLB_PSESM RecName: Full=D-alanine--D-alanine ligase B; AltName:
           Full=D-Ala-D-Ala ligase B; AltName: Full=D-alanylalanine
           synthetase B
 gi|28854792|gb|AAO57855.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. tomato str.
           DC3000]
          Length = 319

 Score =  177 bits (448), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 118/304 (38%), Positives = 173/304 (56%), Gaps = 10/304 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL+SG A   AL DAG     IDV       L   K D AF VLHG
Sbjct: 21  VAVLFGGKSAEREVSLNSGNAVLKALLDAGVDAFGIDVGDDFLQRLVSEKIDRAFIVLHG 80

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--SILVNRF-T 117
             GEDG +Q +LE LEIPYT SG+LASAL+MDK+R+KQV  S G P  P  ++L N    
Sbjct: 81  RGGEDGTMQGLLECLEIPYTGSGVLASALAMDKLRTKQVWQSLG-PATPLHAVLENENDC 139

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
           + +   +  P ++KP   GSS+G+  +     +      +S+++   Q+L+EQ++ G E 
Sbjct: 140 ICAATELGFPLIVKPAHEGSSIGMAKVNSVDELIAAWKAASTYDS--QVLVEQWIQGPEF 197

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           T   +    L    +  P S FY Y+ KY + ++ + +P  +     +++++LA  A  A
Sbjct: 198 TVASLRGQVLPPIGLGTPHS-FYDYDAKYLASDTQYRIPCGLDDAQEQQLKQLAARACDA 256

Query: 238 IGCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           IG  G +R+D + D   +  FW LE+N  PGMT  S+ P  A  AG +F++L+L ++ D+
Sbjct: 257 IGIAGWARTDVMQDAEGK--FWLLEVNTVPGMTDHSLVPMAARAAGLNFQQLVLAILADS 314

Query: 297 SCLR 300
              R
Sbjct: 315 VQAR 318


>gi|289548161|ref|YP_003473149.1| D-alanine/D-alanine ligase [Thermocrinis albus DSM 14484]
 gi|289181778|gb|ADC89022.1| D-alanine/D-alanine ligase [Thermocrinis albus DSM 14484]
          Length = 288

 Score =  177 bits (448), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 109/289 (37%), Positives = 164/289 (56%), Gaps = 8/289 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VLMGG S ERE+SL +G+A   AL   G +   +DV   +   L  +KPD  F  LHG
Sbjct: 3   VVVLMGGRSYEREISLKTGEAILRALRQLGHEAVPLDVTEDLCQRLLEIKPDKVFIALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG VQA+L+LL IPY  SG+LASAL+MDK  +K++++  G+PV   I V R     
Sbjct: 63  PYGEDGRVQAVLDLLGIPYVGSGVLASALAMDKDFTKKILAFHGIPVPRWIAVKRNAPFR 122

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            +L   P V+KP   GSS+G+ V++K++ + L L     W    + LIE+++ G ++T G
Sbjct: 123 WNLF--PAVVKPADQGSSIGLHVVEKEEDLTLAL--EEVWKVSQKALIEEFIQGKDVTVG 178

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           ++ D  L   EI  PK   Y YE KY+   + +V   + P  + +++Q +A   H  +  
Sbjct: 179 ILKDKPLPPIEIR-PKKGVYDYESKYTKGMTEYVF-VEDP-SVVEKLQEIALKVHTLLEL 235

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           + +SR DF         + LE+N  PGMT +S+FP     AG  F +++
Sbjct: 236 KDMSRIDFRLSD-DGTPYVLEVNTIPGMTELSLFPMACNKAGIDFAQMV 283


>gi|254967109|gb|ACT97597.1| putative D-alanine-D-alanine ligase [uncultured organism]
          Length = 304

 Score =  177 bits (448), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 117/307 (38%), Positives = 171/307 (55%), Gaps = 23/307 (7%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD---LAFNV 57
           +AVLMGG SSEREVSL SG A  +AL+  G      D   +    L+ LK      AFN+
Sbjct: 7   VAVLMGGFSSEREVSLDSGAAILAALKSKGVDAHAFDPKETP---LSELKTQGFQTAFNI 63

Query: 58  LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-SILVNRF 116
           LHG FGEDG VQ  LEL+ IPYT SG+ ASAL MDK R K +  + G+PV   ++L +  
Sbjct: 64  LHGTFGEDGAVQGALELMGIPYTGSGVAASALGMDKYRCKLIWQAVGLPVPEFAVLHDDS 123

Query: 117 TMDS-QHLISPPYVIKPLKGGSSLGIIVIKKDQSIP-----LDLLQSSSWNHGDQLLIEQ 170
             D+ +  +  P  +KP   GSS+G++ +K+   +      L  LQ        +++ E+
Sbjct: 124 DFDAVEEKLGLPMFVKPAAEGSSVGVVKVKEKGRLKSVYEELKHLQG-------EIIAER 176

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQR 229
           ++ G E +C V+    L    I +P ++FY YE KY+  ++ +  P++ +  D    ++ 
Sbjct: 177 FIGGGEYSCPVLNGKGLPSIHI-IPATEFYDYEAKYNRDDTVYQCPSEDLSEDEENLMRE 235

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           LA    QAIG  G SR DFL D    K++ LEIN  PGMT  S+ P+ AA+ G  F +L 
Sbjct: 236 LAVRGAQAIGADGCSRVDFLKD-TDGKLYLLEINTLPGMTSHSLVPKSAAHTGVDFADLC 294

Query: 290 LWMVEDA 296
           + +++ A
Sbjct: 295 IEILKTA 301


>gi|237755501|ref|ZP_04584122.1| D-alanine--D-alanine ligase B [Sulfurihydrogenibium yellowstonense
           SS-5]
 gi|237692325|gb|EEP61312.1| D-alanine--D-alanine ligase B [Sulfurihydrogenibium yellowstonense
           SS-5]
          Length = 300

 Score =  177 bits (448), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 103/302 (34%), Positives = 170/302 (56%), Gaps = 14/302 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---DRSVGLVLAHLKPDLAFNV 57
           +A+L GG S ERE+S+ SGKA   AL   G+     D+   D+ +  +L + KPDLAF V
Sbjct: 4   IALLYGGYSREREISIKSGKAVEKALNQLGYTYKVFDIIERDKFIKEILEY-KPDLAFIV 62

Query: 58  LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117
           LHG  GEDG +QAILE L IPYT S +  S ++MDK+ +K  + + G+P    I    FT
Sbjct: 63  LHGKGGEDGTIQAILEFLGIPYTGSDMKTSVIAMDKVLTKMYLKNFGIPTPDWIF---FT 119

Query: 118 MDSQHL-ISP--PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
            + + L   P  P V+K    GSS+G+ ++   Q    +      ++  D++L+E+++ G
Sbjct: 120 EEKEALNYRPDFPVVVKAPTEGSSIGVYIVNNQQE--YENAVKEVFDLDDKVLVEKFIKG 177

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
            ELT  ++ D   D+ E+ V +  FY +  KY +  + ++ PA++  D+YK +Q L    
Sbjct: 178 RELTVSILDDEVFDIVEVVVSEG-FYDFNNKYITGKTQYICPAQLDEDVYKNIQDLGHKV 236

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           ++ + C+G +R D + +        LE+N  PGMT  S+ P+ A   G +F +L+  +++
Sbjct: 237 YKLLNCKGPARVDIILEN-DNNPHVLEVNTIPGMTEFSLLPKAALARGITFIQLVEKIIK 295

Query: 295 DA 296
           ++
Sbjct: 296 NS 297


>gi|70732382|ref|YP_262138.1| D-alanine--D-alanine ligase [Pseudomonas fluorescens Pf-5]
 gi|68346681|gb|AAY94287.1| D-alanine--D-alanine ligase [Pseudomonas fluorescens Pf-5]
          Length = 318

 Score =  176 bits (447), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 114/294 (38%), Positives = 166/294 (56%), Gaps = 10/294 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL SGKA   AL+  G     IDV   +   L   K D AF +LHG
Sbjct: 20  VAVLYGGKSAEREVSLKSGKAVLEALQSGGVNAFGIDVGDDLLQRLLSEKIDRAFIILHG 79

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LE L IPYT SGILASAL+MDK+R+KQV  S G+P  P   V     D 
Sbjct: 80  RGGEDGSMQGLLECLGIPYTGSGILASALAMDKLRTKQVWHSLGIPT-PRHAVLSSEADC 138

Query: 121 QHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
              ++    P ++KP   GSS+G+  +     + +D  +++S  +  Q+L+EQ++ G E 
Sbjct: 139 ISAVAELGLPLIVKPAHEGSSIGMAKVTSASEL-IDAWKAAS-TYDSQVLVEQWIQGPEF 196

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           T   + D  L    +  P + FY Y+ KY + ++ + +P  +     +E+  L   A +A
Sbjct: 197 TIATLRDQVLPPIALGTPHT-FYDYDAKYLASDTQYRIPCGLDSSKEQELMELTAKACEA 255

Query: 238 IGCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +G  G +R+D + D  ++  FW LE+N  PGMT  S+ P  A  AG  F++L+L
Sbjct: 256 LGIAGWARADVMQD--AQGQFWFLEVNTAPGMTDHSLVPMAARAAGLDFQQLVL 307


>gi|198282522|ref|YP_002218843.1| D-alanine/D-alanine ligase [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|218665251|ref|YP_002424712.1| D-alanine--D-alanine ligase [Acidithiobacillus ferrooxidans ATCC
           23270]
 gi|198247043|gb|ACH82636.1| D-alanine/D-alanine ligase [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|218517464|gb|ACK78050.1| D-alanine--D-alanine ligase [Acidithiobacillus ferrooxidans ATCC
           23270]
          Length = 308

 Score =  176 bits (447), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 117/299 (39%), Positives = 162/299 (54%), Gaps = 7/299 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSV-GLVLAHLKPDLAFNVLH 59
           +AVL GG S EREVSL SG A    L+  G     +D+  ++    +A     +AFNV H
Sbjct: 7   IAVLYGGPSGEREVSLDSGHAVLQTLQGLGMDAVGVDIQPAILQQQMAESGAQIAFNVCH 66

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--FT 117
           G  GEDGL+QA LE L++PYT SG+LASAL+MDK R KQ+  + G+PV   IL++R   T
Sbjct: 67  GAVGEDGLLQACLETLDMPYTGSGVLASALAMDKWRCKQLWRAAGLPVTDGILLHRGSHT 126

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            D       P  IKP  GGSSLG  V K      LD     ++   D++L E  V G E+
Sbjct: 127 PDLGARFGWPLYIKPNHGGSSLG--VSKVGGPAELDAALQCAFAIEDEVLCEGAVIGHEV 184

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           T G++   +L    I  P++ FY Y  KY + ++ ++LP+ +   + +++Q LA  A   
Sbjct: 185 TVGILDGQALPPIVIETPRA-FYDYTAKYLADDTRYLLPSGLGAPLEQQLQALALRAFAE 243

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +GCR   R DF+     R    LE+N  PGMT  S+ P  A   G  F EL   ++  A
Sbjct: 244 LGCRDWGRVDFMIGGDGRPHL-LEVNSVPGMTSHSLIPMAAKATGMGFPELCATILRTA 301


>gi|205351469|ref|YP_002225270.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|205271250|emb|CAR36038.1| D-alanine:D-alanine ligase B [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|326626496|gb|EGE32839.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 9]
          Length = 306

 Score =  176 bits (447), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 110/303 (36%), Positives = 166/303 (54%), Gaps = 13/303 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+ER+VSL+SG A  + L + G     +D        L  +     F  LHG
Sbjct: 5   IAVLLGGTSAERDVSLNSGAAVLAGLREGGIDAHPVDPQEVDVAQLKAMGFQKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR----- 115
             GEDG +Q +LELL +PYT SG++ASALSMDK+RSK +    G+PV P + + R     
Sbjct: 65  RGGEDGTLQGMLELLGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124

Query: 116 -FTMDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
             + + +  IS    P ++KP + GSS+G+  + ++ ++   L  S S+ H D++LIE++
Sbjct: 125 GLSEEQKARISALGLPLIVKPSREGSSVGMTKVVEENALQGAL--SLSFQHDDEILIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L    I  P   FY YE KY S  + +  PA +       +Q L 
Sbjct: 183 LCGPEFTVAIVGEEILPSIRIQ-PAGTFYDYEAKYLSDETQYFCPAGLDASQEAALQSLV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A +A+GC G  R D + D    + + LE N  PGMT  S+    A  AG SF +L++ 
Sbjct: 242 LQAWKALGCTGWGRIDVMLDS-DGQFYLLEANTSPGMTSHSLVTMAARQAGMSFSQLVVR 300

Query: 292 MVE 294
           ++E
Sbjct: 301 ILE 303


>gi|157369008|ref|YP_001476997.1| D-alanine--D-alanine ligase [Serratia proteamaculans 568]
 gi|157320772|gb|ABV39869.1| D-alanine--D-alanine ligase [Serratia proteamaculans 568]
          Length = 306

 Score =  176 bits (447), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 111/304 (36%), Positives = 167/304 (54%), Gaps = 15/304 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-DRSVGLVLAHLKPDLAFNVLH 59
           +AVL+GG S+EREVSL SG A  + L +AG     ID+ D  V  +  H    + F  LH
Sbjct: 5   VAVLLGGTSAEREVSLQSGAAVLAGLREAGIDAHGIDIRDFPVTQLKEHGFTKV-FIALH 63

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---F 116
           G  GEDG +Q +LE LE+PYT SG++ASAL+MDK R+K V  S G+PV P + +NR    
Sbjct: 64  GRGGEDGTLQGMLEFLELPYTGSGVMASALTMDKWRTKMVWQSMGLPVAPYVALNRKQYA 123

Query: 117 TMDSQHLISP------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
             +   LI+       P ++KP + GSS+G+  + +  ++   L     + H D +L+E+
Sbjct: 124 GAEKATLIARVEALGLPLIVKPSREGSSVGMSKVTERDALEAAL--EEGFRHDDDVLVEK 181

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
           ++ G E T  ++GD  L    I  P   FY Y+ KY S ++ +  P+ +      E+  L
Sbjct: 182 WLSGPEYTVAMLGDQVLPSIRIQ-PAGVFYDYQAKYISDDTQYFCPSGLGAQQEAEMAAL 240

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A  A++ + C G  R D + D      + LE+N  PGMT  S+ P  A  +G SF +L+ 
Sbjct: 241 ALRAYRGLDCSGWGRVDVMQDS-DGSFYLLEVNTSPGMTSHSLVPMAARQSGLSFSQLVA 299

Query: 291 WMVE 294
            ++E
Sbjct: 300 RILE 303


>gi|114330270|ref|YP_746492.1| D-alanine--D-alanine ligase [Nitrosomonas eutropha C91]
 gi|122314679|sp|Q0AJE4|DDL_NITEC RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|114307284|gb|ABI58527.1| D-alanine--D-alanine ligase [Nitrosomonas eutropha C91]
          Length = 306

 Score =  176 bits (447), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 109/299 (36%), Positives = 168/299 (56%), Gaps = 12/299 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP---DLAFNV 57
           +AVL+GG S+ERE+SL SG A  +AL+ +       D    VG  L  L     D AF  
Sbjct: 9   VAVLLGGRSAEREISLKSGHAVLAALQRSQVDAHAFD---PVGQPLEDLLKQGFDRAFIA 65

Query: 58  LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117
           LHG +GEDG VQ  LEL+++PYT SGILASAL+MDK R+K +  + G+     ++++  +
Sbjct: 66  LHGRYGEDGSVQGALELMDLPYTGSGILASALAMDKWRTKMIWQAAGISTPDYVMLDADS 125

Query: 118 --MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175
              +    +  P +IKP + GS++G+   K D +  +     ++  H   ++ EQ++ GI
Sbjct: 126 NFQEVTDRLGLPLIIKPAREGSTIGL--NKVDYAQDMQSAYQTAAQHDSLVIAEQFIQGI 183

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
           ELT  ++ D  L +  I V +   Y Y+ KY S ++ +  P+ +   +   +Q  A  AH
Sbjct: 184 ELTAAILDDVPLPLVRIDVTEG-LYDYQAKYFSESTRYTCPSGLSKILTTRIQEQALYAH 242

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           + +GC G SR D + D  + + F+LE N  PGMT  S+ P  A  AG SF EL++ ++E
Sbjct: 243 RILGCTGWSRVDLILDK-NGQPFFLEANTSPGMTNHSLVPMAAQAAGISFDELVIQILE 300


>gi|319789827|ref|YP_004151460.1| D-alanine/D-alanine ligase [Thermovibrio ammonificans HB-1]
 gi|317114329|gb|ADU96819.1| D-alanine/D-alanine ligase [Thermovibrio ammonificans HB-1]
          Length = 292

 Score =  176 bits (447), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 105/296 (35%), Positives = 171/296 (57%), Gaps = 11/296 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +A++ GG S E E+S  S ++   AL+  G +V ++++ + + L LA   PD+AF  LHG
Sbjct: 3   VALIYGGPSPEAEISRKSAESVERALKKLGHRVLKLELTKELPLKLAAESPDVAFLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
           + GEDG VQ +LE++ IPYT  G+  SA+++DK  +K+++ S G+ V   I V R     
Sbjct: 63  SPGEDGTVQGLLEIMGIPYTGCGVTTSAVAIDKDLTKRLLKSHGIRVPAGITVFR----G 118

Query: 121 QHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
           Q +  P   P ++KP + GSS+G+ ++K  +     + ++ + +   + LIE++++G E+
Sbjct: 119 QEIPEPAELPCIVKPARVGSSVGLSLVKSQEEFERAVNEALTVDA--KALIEEFIEGREI 176

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           T GV+    L   EI  P  + Y YE KYS   + +V+PA++     + + RLA  A++ 
Sbjct: 177 TVGVLNGRPLPPVEILTP-GELYDYEAKYSDSRTEYVVPAELGRKTQERLCRLAEKAYKV 235

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           + CRG  R DF  D  +  V  LEIN  PG+T  S+ P+ A  AG  F EL+  M+
Sbjct: 236 LECRGAVRVDFRLDKYNSPVL-LEINTIPGLTERSLLPKAAKAAGMEFEELIAEML 290


>gi|221065140|ref|ZP_03541245.1| D-alanine/D-alanine ligase [Comamonas testosteroni KF-1]
 gi|220710163|gb|EED65531.1| D-alanine/D-alanine ligase [Comamonas testosteroni KF-1]
          Length = 323

 Score =  176 bits (446), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 110/297 (37%), Positives = 163/297 (54%), Gaps = 11/297 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSEREVSL SG    +AL+  G    + D        L     D  F  LHG
Sbjct: 16  VAVLMGGRSSEREVSLMSGTGVLAALQSKGVDAHKFDPAEQGLDQLKAQGFDRCFIALHG 75

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTM 118
            +GEDG VQ  LELL+IPYT SG++AS+++MDK+ +K++    G+P     +V+    T 
Sbjct: 76  RYGEDGTVQGALELLDIPYTGSGVMASSIAMDKIMTKRIWRFEGLPTPDWRMVDSAEATR 135

Query: 119 DSQHLISPPYVIKPLKGGSSLGII-VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            +   +  P ++KP + GSS+G+  V+  D+      L +    +  ++L EQ++ G E 
Sbjct: 136 AALQALGAPMIVKPARDGSSIGLTKVMDADECARAYELAA---QYDAEVLCEQFIAGDET 192

Query: 178 TCGVMGD----ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           TC V+G     A+L V  I  P+ + Y Y+ KY +  + +  P+ +P     E+QR+   
Sbjct: 193 TCPVLGTGAKAAALPVIRIVAPEGN-YDYQNKYFTDTTQYHCPSGLPAAEEAEIQRIVEK 251

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A + +GCRG +R+D +     RK F LEIN  PGMT  S+ P  A  +G S+  L L
Sbjct: 252 AFRTLGCRGWARADIMIRASDRKPFLLEINTSPGMTGHSLVPMAARASGVSYENLCL 308


>gi|241765424|ref|ZP_04763394.1| D-alanine/D-alanine ligase [Acidovorax delafieldii 2AN]
 gi|241364829|gb|EER59802.1| D-alanine/D-alanine ligase [Acidovorax delafieldii 2AN]
          Length = 337

 Score =  176 bits (446), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 109/304 (35%), Positives = 168/304 (55%), Gaps = 11/304 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-VDRSVGLVLAHLKPDLAFNVLH 59
           +AVLMGG S+EREVSL SG     AL   G      D  +R +G  L        F  LH
Sbjct: 16  VAVLMGGASAEREVSLMSGAGVLQALRSRGVDAHAFDPAERDLG-ELRREGFARCFIALH 74

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF--T 117
           G  GEDG VQ  LELL IPYT  G++AS++SMDK+ +K++  + G+P     LV     T
Sbjct: 75  GRHGEDGTVQGALELLGIPYTGPGVMASSMSMDKIMTKRIWRAEGLPTPDWRLVASVEET 134

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
           +++   +  P ++KP + GS++G+  +           Q+S ++   ++L EQ+++G E 
Sbjct: 135 VEALETLGAPMIVKPSREGSTIGLSKVFSPDECAKAYEQASRYD--PEVLCEQFIEGDET 192

Query: 178 TCGVMGDAS----LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           TC V+G+ +    L V  I  P+ + Y Y+ KY + ++ +  P+ +P    +E+QRL   
Sbjct: 193 TCPVLGEGAGAHALPVIRIVAPQGN-YDYQNKYFTDDTQYHCPSGLPEAQEREIQRLVVQ 251

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           A + +GCRG +R+D +     RK F LEIN  PGMT  S+ P  A   G S+ +L + ++
Sbjct: 252 AFRTLGCRGWARADIMIRACDRKPFLLEINTSPGMTGHSLVPMSARALGISYEDLCVGLL 311

Query: 294 EDAS 297
             A+
Sbjct: 312 ATAT 315


>gi|261379331|ref|ZP_05983904.1| D-alanine--D-alanine ligase B [Neisseria subflava NJ9703]
 gi|284797768|gb|EFC53115.1| D-alanine--D-alanine ligase B [Neisseria subflava NJ9703]
          Length = 304

 Score =  176 bits (446), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 115/302 (38%), Positives = 171/302 (56%), Gaps = 13/302 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD---LAFNV 57
           +AVLMGG SSEREVSL SG A  +AL+  G      D   +    L+ LK      AFN+
Sbjct: 7   VAVLMGGFSSEREVSLDSGAAILAALKSKGVDAHAFDPKETP---LSELKTQGFQTAFNI 63

Query: 58  LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-SILVNRF 116
           LHG FGEDG VQ  LEL+ IPYT SG+ ASAL MDK R K +  + G+PV   ++L +  
Sbjct: 64  LHGTFGEDGAVQGALELMGIPYTGSGVAASALGMDKYRCKLIWQAVGLPVPEFAVLHDDS 123

Query: 117 TMDS-QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175
             D+ +  +  P  +KP   GSS+G++ +K+   +   + +      G +++ E+++ G 
Sbjct: 124 DFDAVEEKLGLPMFVKPAAEGSSVGVVKVKEKGRLK-SVYEEFKHLQG-EIIAERFIGGG 181

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLA 234
           E +C V+    L    I +P ++FY YE KY+  ++ +  P++ +  D    ++ LA   
Sbjct: 182 EYSCPVLNGKGLPSIHI-IPATEFYDYEAKYNRDDTVYQCPSEDLSEDEENLMRELAVRG 240

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            QAIG  G SR DFL D    K++ LEIN  PGMT  S+ P+ AA+ G  F +L + +++
Sbjct: 241 AQAIGADGCSRVDFLKD-TDGKLYLLEINTLPGMTSHSLVPKSAAHTGVDFADLCIEILK 299

Query: 295 DA 296
            A
Sbjct: 300 TA 301


>gi|224581973|ref|YP_002635771.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|224466500|gb|ACN44330.1| D-alanylalanine synthetase [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
          Length = 306

 Score =  176 bits (446), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 109/303 (35%), Positives = 166/303 (54%), Gaps = 13/303 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+ER+VSL+SG A  + L + G     +D        L  +     F  LHG
Sbjct: 5   IAVLLGGTSAERDVSLNSGAAVLAGLREGGIDAHPVDPQEVDVAQLKAMGFQKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR----- 115
             GEDG +Q +LELL +PYT SG++ASALSMDK+RSK +    G+PV P + + R     
Sbjct: 65  RGGEDGTLQGMLELLGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124

Query: 116 -FTMDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
             + + +  IS    P ++KP + GSS+G+  + ++ ++   L  S ++ H D++LIE++
Sbjct: 125 GLSEEQKARISALGLPLIVKPSREGSSVGMTKVVEENALQGAL--SLAFQHDDEILIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L    I  P   FY YE KY S  + +  PA +       +Q L 
Sbjct: 183 LCGPEFTVAIVGEEILPSIRIQ-PAGTFYDYEAKYLSDETQYFCPAGLEASQEAALQSLV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A +A+GC G  R D + D    + + LE N  PGMT  S+ P  A  AG S  +L++ 
Sbjct: 242 LQAWKALGCTGWGRIDVMLDS-DGQFYLLEANTSPGMTSHSLVPMAARQAGMSLSQLVVR 300

Query: 292 MVE 294
           ++E
Sbjct: 301 ILE 303


>gi|317402453|gb|EFV83022.1| D-alanine-D-alanine ligase [Achromobacter xylosoxidans C54]
          Length = 316

 Score =  176 bits (446), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 117/307 (38%), Positives = 167/307 (54%), Gaps = 16/307 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VL GG S+EREVSL SG     AL  AG      D        LA    +  F  LHG
Sbjct: 8   VGVLYGGRSAEREVSLMSGAGVHQALLSAGVDAHLFDTGERSLAELAAEGFERVFIALHG 67

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG +Q  LELL IPYT SG LASAL+MDK  +K+V    G+P     L++    D+
Sbjct: 68  RFGEDGSIQGALELLGIPYTGSGPLASALAMDKTMTKRVWLQHGLPTPEFELLD---ADT 124

Query: 121 QHLISP-----PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175
           +  + P     P +IKP   GS++GI  +     +      ++ ++   ++L EQ++ G 
Sbjct: 125 ELRLVPDRLSLPLIIKPPHEGSTVGITKVVGYSDMKEAYALAAKFDA--EVLAEQFIQGR 182

Query: 176 ELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           ELT  ++G      +L V EIA P  + Y YE KY S ++ +  PA +P  + +EV  +A
Sbjct: 183 ELTVAILGGGKSARALPVIEIAAPGGN-YDYEHKYFSDDTQYFCPAALPPAVAEEVADIA 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A++A+GC G  R+DF+ D  +R  + LE+N  PGMT  S+ P  A   G S+ EL + 
Sbjct: 242 VRAYRALGCEGWGRADFMLDADNRP-WLLEMNTSPGMTSHSLVPMAARATGMSYAELCVA 300

Query: 292 MVEDASC 298
           ++ DASC
Sbjct: 301 ILADASC 307


>gi|281177312|dbj|BAI53642.1| D-alanine-D-alanine ligase B [Escherichia coli SE15]
          Length = 306

 Score =  176 bits (446), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 108/303 (35%), Positives = 167/303 (55%), Gaps = 13/303 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SG A  + L + G     +D        L  +     F  LHG
Sbjct: 5   IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117
             GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK +  S G+PV P + + R     
Sbjct: 65  RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQSAGLPVAPWVALTRAEFEK 124

Query: 118 -MDSQHL-----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
            ++ + L     +  P ++KP + GSS+G+  +  + ++  D L+  ++ H +++LIE++
Sbjct: 125 GLNDKQLAEISSLGLPVIVKPSREGSSVGMSKVVAENALQ-DALR-LAFQHDEEVLIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L    I  P   FY YE KY S  + +  PA +       +Q L 
Sbjct: 183 LSGPEFTVAILGEEILPSIRIQ-PAGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A   +GC+G  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 242 LKAWTTLGCKGWGRIDVMLDS-DGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300

Query: 292 MVE 294
           ++E
Sbjct: 301 ILE 303


>gi|330877131|gb|EGH11280.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. morsprunorum
           str. M302280PT]
          Length = 319

 Score =  176 bits (445), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 115/303 (37%), Positives = 170/303 (56%), Gaps = 8/303 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL+SG A   AL DAG     IDV       L   K D AF VLHG
Sbjct: 21  VAVLFGGKSAEREVSLNSGNAVLKALLDAGVDAFGIDVGDDFLQRLVSEKIDRAFIVLHG 80

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV--PVCPSILVNRFTM 118
             GEDG +Q +LE LEIPYT SG+LASAL+MDK+R+KQV  S G+  P+   +      +
Sbjct: 81  RGGEDGTMQGLLECLEIPYTGSGVLASALAMDKLRTKQVWQSLGLATPLHAVLENENDCI 140

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   +  P ++KP   GSS+G+  +     +      +S+++   Q+L+EQ++ G E T
Sbjct: 141 CAATELGFPLIVKPAHEGSSIGMAKVNSVDELIAAWKAASTYDS--QVLVEQWIQGPEFT 198

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +    L    +  P S FY Y+ KY + ++ + +P  +     +++++LA  A  AI
Sbjct: 199 VASLRGQVLPPIGLGTPHS-FYDYDAKYLASDTQYRIPCGLDYAQEQQLKQLAARACDAI 257

Query: 239 GCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           G  G +R+D + D   +  FW LE+N  PGMT  S+ P  A  AG  F++L+L ++ D+ 
Sbjct: 258 GIAGWARTDVMQDAQGK--FWLLEVNTVPGMTDHSLVPMAARAAGLDFQQLVLAILADSV 315

Query: 298 CLR 300
             R
Sbjct: 316 QAR 318


>gi|294787903|ref|ZP_06753147.1| D-alanine--D-alanine ligase B [Simonsiella muelleri ATCC 29453]
 gi|294484196|gb|EFG31879.1| D-alanine--D-alanine ligase B [Simonsiella muelleri ATCC 29453]
          Length = 306

 Score =  176 bits (445), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 115/301 (38%), Positives = 170/301 (56%), Gaps = 9/301 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSEREVSL SG A  +AL+  G      D   +    L +   D+AFN LHG
Sbjct: 7   VAVLMGGFSSEREVSLDSGNAILTALKSKGVDAHAFDPAETELFELKNQGFDIAFNTLHG 66

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFT 117
           ++GEDG VQ  LE L IPYT  G+LASA+ MDK RSK +  +  +PV P +++   + FT
Sbjct: 67  SYGEDGTVQGALEALAIPYTGCGVLASAIGMDKYRSKLLWQALNLPVPPFVILTDTSDFT 126

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
                L   P  IKP   GSS+G+  IK    +     +    +   +++ E+++ G E 
Sbjct: 127 AVEAQL-GLPMFIKPAAEGSSVGVYKIKTVGELQQKYQELRDQHMHGEIMAEKFMSGGEY 185

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQ 236
           TCGV+   +    +I +P+++FY YE KY+  ++ ++ P+  IP D  + ++ LA  A +
Sbjct: 186 TCGVIYRKAFPSIKI-IPQNEFYDYEAKYNRDDTIYLCPSDLIPAD-EQLMRDLALKAFE 243

Query: 237 AI-GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           AI G     R DFL D    K++ LE N  PGMT  S+ P+ A  AG +F +L + +++ 
Sbjct: 244 AIGGGNNCGRVDFLRDA-DGKIYILEANTLPGMTSHSLIPKSAQVAGVAFADLCIDILKT 302

Query: 296 A 296
           A
Sbjct: 303 A 303


>gi|268591753|ref|ZP_06125974.1| D-alanine--D-alanine ligase B [Providencia rettgeri DSM 1131]
 gi|291312714|gb|EFE53167.1| D-alanine--D-alanine ligase B [Providencia rettgeri DSM 1131]
          Length = 306

 Score =  176 bits (445), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 110/304 (36%), Positives = 163/304 (53%), Gaps = 17/304 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL SG A  + L  AG     ID        L     +  F  LHG
Sbjct: 5   VAVLLGGSSAEREVSLQSGNAVLAGLRQAGIDAHPIDPQDFPVETLKDAGFNKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LE L +PYT SG++ASALSMDK+R+KQ+    G+ V P + + +     
Sbjct: 65  RGGEDGTLQGLLETLNLPYTGSGVMASALSMDKLRTKQLWQGAGLSVSPYVYLTKQQYKQ 124

Query: 121 Q---------HLISPPYVIKPLKGGSSLGIIVIKKDQSIP--LDLLQSSSWNHGDQLLIE 169
                       +  P ++KP   GSS+G+  +   +++P  LDL    ++   + LLIE
Sbjct: 125 ASYEQIVAKVQFLGLPLIVKPSLEGSSVGMSKVDNLEALPAALDL----AFQFDETLLIE 180

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           +++ G E T  V+GD +L    I  P   FY YE KY S  + +  P+ +   +  E+  
Sbjct: 181 KWLSGPEFTVAVLGDNTLPPIRIQ-PPGIFYDYEAKYLSDETQYFCPSGLDEQLESELAD 239

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           LA  A+Q +GC G  R D + D  + + + LE+N  PGMT  S+ P  A  AG SF +L+
Sbjct: 240 LALKAYQVVGCEGWGRVDVMQDS-NGQFYLLEVNTSPGMTSHSLVPMAARQAGMSFSQLV 298

Query: 290 LWMV 293
           + ++
Sbjct: 299 VQIL 302


>gi|319639048|ref|ZP_07993805.1| D-alanine-D-alanine ligase [Neisseria mucosa C102]
 gi|317399626|gb|EFV80290.1| D-alanine-D-alanine ligase [Neisseria mucosa C102]
          Length = 304

 Score =  176 bits (445), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 116/307 (37%), Positives = 171/307 (55%), Gaps = 23/307 (7%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD---LAFNV 57
           +AVLMGG SSEREVSL SG A  +AL+  G      D   +    L+ LK      AFN+
Sbjct: 7   VAVLMGGFSSEREVSLDSGAAILAALKSKGVDAHAFDPKETP---LSELKTQGFQTAFNI 63

Query: 58  LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-SILVNRF 116
           LHG FGEDG +Q  LEL+ IPYT SG+ ASAL MDK R K +  + G+PV   ++L +  
Sbjct: 64  LHGTFGEDGAIQGALELMGIPYTGSGVAASALGMDKYRCKLIWQAVGLPVPEFAVLHDDS 123

Query: 117 TMDS-QHLISPPYVIKPLKGGSSLGIIVIKKDQSIP-----LDLLQSSSWNHGDQLLIEQ 170
             D+ +  +  P  +KP   GSS+G++ +K+   +      L  LQ        +++ E+
Sbjct: 124 DFDAVEEKLGLPMFVKPAAEGSSVGVVKVKEKGRLKSVYEELKHLQG-------EIIAER 176

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR- 229
           ++ G E +C V+    L    I +P ++FY YE KY+  ++ +  P++   +  + + R 
Sbjct: 177 FIGGGEYSCPVLNGKGLPSIHI-IPATEFYDYEAKYNRDDTVYQCPSEDLSEAEENLMRE 235

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           LA    QAIG  G SR DFL D    K++ LEIN  PGMT  S+ P+ AA+ G  F +L 
Sbjct: 236 LAVRGAQAIGADGCSRVDFLKD-TDGKLYLLEINTLPGMTSHSLVPKSAAHTGVDFADLC 294

Query: 290 LWMVEDA 296
           + +++ A
Sbjct: 295 IEILKTA 301


>gi|34763164|ref|ZP_00144131.1| D-alanine--D-alanine ligase [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
 gi|237742548|ref|ZP_04573029.1| D-alanine-D-alanine ligase [Fusobacterium sp. 4_1_13]
 gi|294784929|ref|ZP_06750217.1| D-alanine--D-alanine ligase [Fusobacterium sp. 3_1_27]
 gi|27887162|gb|EAA24266.1| D-alanine--D-alanine ligase [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
 gi|229430196|gb|EEO40408.1| D-alanine-D-alanine ligase [Fusobacterium sp. 4_1_13]
 gi|294486643|gb|EFG34005.1| D-alanine--D-alanine ligase [Fusobacterium sp. 3_1_27]
          Length = 287

 Score =  176 bits (445), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 107/297 (36%), Positives = 165/297 (55%), Gaps = 19/297 (6%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD--LAFNVL 58
           +AV MGG SSE+E+SL SG+A   +L+   +    + +D     V A L  D  LA+ VL
Sbjct: 3   IAVFMGGTSSEKEISLKSGEAVLESLKKQSYDAYGVILDEK-NQVTAFLDNDYDLAYLVL 61

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
           HG  GE+G +QA+L++L   YT SG+LASA++MDK ++KQ+  S G+    +        
Sbjct: 62  HGGNGENGKIQAVLDILGKKYTGSGVLASAITMDKDKTKQIAQSVGIKTPKAYRT----- 116

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
             + +   P +IKP+  GSS G+ +    +          +     + +IE Y+ G ELT
Sbjct: 117 -VEEIEKFPVIIKPVDEGSSKGVFLCNNREE------AEKAVKKIVRPIIEDYIVGEELT 169

Query: 179 CGVMGDASLDVTEIAVPKSD-FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
            GV+   +L V +I +P++D  Y Y+ KY+   S H  PAKI    YKE  ++A   H  
Sbjct: 170 VGVLNGEALGVLKI-IPQADVLYDYDSKYAKGGSIHEFPAKIENKSYKEAMKIAEKIHSE 228

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            G +G SRSDF+      ++++LE+N  PGMT  S+ P++A   GY+F +++   VE
Sbjct: 229 FGMKGTSRSDFILS--EGELYFLEVNSSPGMTKTSLIPDLATLKGYTFDDVVRITVE 283


>gi|257465206|ref|ZP_05629577.1| D-alanine--D-alanine ligase [Actinobacillus minor 202]
 gi|257450866|gb|EEV24909.1| D-alanine--D-alanine ligase [Actinobacillus minor 202]
          Length = 303

 Score =  176 bits (445), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 112/299 (37%), Positives = 167/299 (55%), Gaps = 11/299 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG+S+EREVSL+SGK+   AL+  G+ V  ID        L        FN+LHG
Sbjct: 8   IAVLFGGVSAEREVSLNSGKSVFEALQSLGYNVEAIDTKEFPIEKLKEKGIQRVFNILHG 67

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF-TMD 119
             GE+G++Q  LE L IPYT  G++ASA+++DK R+K + ++ G+P     +V R   ++
Sbjct: 68  GIGENGVLQGALEQLGIPYTGCGVMASAITLDKFRTKLLWNAVGLPTAAMEVVRRGQAVN 127

Query: 120 SQHLISP---PYVIKPLKGGSSLGIIVIKK-DQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175
           S  +I+    P  +KP   GSS+G+  +K  +Q IP       +      +L+E+ + G 
Sbjct: 128 SDEIIAKLGLPLFVKPASEGSSVGVSKVKTAEQLIP---AIEEALKFDSIVLVEENLAGA 184

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
           E +  V+    L   +I +P  +FY Y  KY S N+ +V+PA +  D   EV +L   A+
Sbjct: 185 EYSVPVLDGEVLPAVQI-IPDGEFYDYHAKYISDNTQYVVPA-LNADRQAEVAKLVKQAY 242

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             +GCRG SR D + D        +E+N  PGMT  SIFP+ AA  GYSF  L+  ++E
Sbjct: 243 DVVGCRGWSRIDVMEDG-EGNFRLVEVNTCPGMTSHSIFPKSAATVGYSFERLVERVLE 300


>gi|288819097|ref|YP_003433445.1| D-alanine:D-alanine ligase [Hydrogenobacter thermophilus TK-6]
 gi|288788497|dbj|BAI70244.1| D-alanine:D-alanine ligase [Hydrogenobacter thermophilus TK-6]
 gi|308752680|gb|ADO46163.1| D-alanine/D-alanine ligase [Hydrogenobacter thermophilus TK-6]
          Length = 288

 Score =  176 bits (445), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 106/289 (36%), Positives = 164/289 (56%), Gaps = 8/289 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VLMGG S ERE+SL +G+A   A+ + G +   +D++ ++   L  +KPD  F  LHG
Sbjct: 3   VVVLMGGRSEEREISLKTGEAVLRAIRELGHEAIPLDLEENLCQKLLEIKPDKVFIALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG VQ +L++L IPYT SG+L S L+MDK  +K++++   +PV   I V R     
Sbjct: 63  TYGEDGRVQGLLDILGIPYTGSGVLGSCLAMDKDITKKILTFHRIPVPAGICVRRGETFE 122

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            H  S P V+KP   GSS+G+ ++K    +   + +  S +H  ++LIE+Y+ G ++T G
Sbjct: 123 WH--SFPAVVKPADQGSSVGLFLVKDHDELENAVREVLSISH--KVLIEEYIIGRDITVG 178

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           ++   +L   EI  PK   Y YE KY+   S +V      L   K++Q +A + H+ +  
Sbjct: 179 ILKGEALPPVEIK-PKKGIYDYESKYTKGMSDYVFLEDEKL--IKKLQDIALMVHKYLEL 235

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           + ISR DF         + LE N  PGMT +S+FP M    G  F+E++
Sbjct: 236 KDISRVDFRLSE-DGVAYVLEANTIPGMTELSLFPMMCKKKGIEFKEMI 283


>gi|115372760|ref|ZP_01460066.1| D-alanine--D-alanine ligase [Stigmatella aurantiaca DW4/3-1]
 gi|115370241|gb|EAU69170.1| D-alanine--D-alanine ligase [Stigmatella aurantiaca DW4/3-1]
          Length = 280

 Score =  176 bits (445), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 106/280 (37%), Positives = 161/280 (57%), Gaps = 9/280 (3%)

Query: 23  ASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
           A AL   G+ V +IDV + V   L   K D+A+  LHG +GEDG +Q +LE L IPYT S
Sbjct: 2   AKALRSLGYDVVEIDVGKDVAARLTAEKVDVAWLALHGRYGEDGSIQGLLESLFIPYTGS 61

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL----ISPPYVIKPLKGGSS 138
           G+LASA+ MDK+ +K + ++ G+P  P       T   +       S P V+KP + GSS
Sbjct: 62  GVLASAVGMDKVYAKWIFTTHGIPTPPYKTFKDATSAREAADTLPFSYPVVVKPSREGSS 121

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD 198
           +G+ V K  ++  L  ++ ++  +   LL+EQ++ G E+   V+ D +L V E+ V + +
Sbjct: 122 VGVHVCKTKEAY-LAAVEDAA-RYAGTLLVEQFIPGREVQGAVLDDEALGVIEVVVAR-E 178

Query: 199 FYSYELKYSSLNST-HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
           FY +  KY+S + T ++ PA +P D Y+ V  +   AH+A+GC+G SRSD +       V
Sbjct: 179 FYDHTAKYTSGSGTKYLFPAPLPADQYERVNAVCLAAHRALGCQGASRSDVIITE-GGDV 237

Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           F LE N  PGMT  S+ P++AA  G  F  L   +++ AS
Sbjct: 238 FVLETNTLPGMTETSLLPKIAAGRGIDFPALCERILQGAS 277


>gi|15799776|ref|NP_285788.1| D-alanine--D-alanine ligase [Escherichia coli O157:H7 EDL933]
 gi|15829350|ref|NP_308123.1| D-alanine--D-alanine ligase [Escherichia coli O157:H7 str. Sakai]
 gi|168751398|ref|ZP_02776420.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str.
           EC4113]
 gi|168755700|ref|ZP_02780707.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str.
           EC4401]
 gi|168764029|ref|ZP_02789036.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str.
           EC4501]
 gi|168771316|ref|ZP_02796323.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str.
           EC4486]
 gi|168776936|ref|ZP_02801943.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str.
           EC4196]
 gi|168781977|ref|ZP_02806984.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str.
           EC4076]
 gi|168789619|ref|ZP_02814626.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str. EC869]
 gi|168801519|ref|ZP_02826526.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str. EC508]
 gi|195939308|ref|ZP_03084690.1| D-alanine--D-alanine ligase [Escherichia coli O157:H7 str. EC4024]
 gi|208806008|ref|ZP_03248345.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str.
           EC4206]
 gi|208813450|ref|ZP_03254779.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str.
           EC4045]
 gi|208821506|ref|ZP_03261826.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str.
           EC4042]
 gi|209399854|ref|YP_002268700.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str.
           EC4115]
 gi|217325585|ref|ZP_03441669.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str.
           TW14588]
 gi|254791229|ref|YP_003076066.1| D-alanine--D-alanine ligase [Escherichia coli O157:H7 str. TW14359]
 gi|261226849|ref|ZP_05941130.1| D-alanine:D-alanine ligase [Escherichia coli O157:H7 str. FRIK2000]
 gi|261255253|ref|ZP_05947786.1| D-alanine:D-alanine ligase [Escherichia coli O157:H7 str. FRIK966]
 gi|22095573|sp|Q8X9Y6|DDLB_ECO57 RecName: Full=D-alanine--D-alanine ligase B; AltName:
           Full=D-Ala-D-Ala ligase B; AltName: Full=D-alanylalanine
           synthetase B
 gi|12512798|gb|AAG54396.1|AE005186_2 D-alanine-D-alanine ligase B, affects cell division [Escherichia
           coli O157:H7 str. EDL933]
 gi|13359552|dbj|BAB33519.1| D-alanine-D-alanine ligase B [Escherichia coli O157:H7 str. Sakai]
 gi|187767759|gb|EDU31603.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str.
           EC4196]
 gi|188014545|gb|EDU52667.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str.
           EC4113]
 gi|189000480|gb|EDU69466.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str.
           EC4076]
 gi|189356982|gb|EDU75401.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str.
           EC4401]
 gi|189359901|gb|EDU78320.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str.
           EC4486]
 gi|189365902|gb|EDU84318.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str.
           EC4501]
 gi|189370780|gb|EDU89196.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str. EC869]
 gi|189376378|gb|EDU94794.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str. EC508]
 gi|208725809|gb|EDZ75410.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str.
           EC4206]
 gi|208734727|gb|EDZ83414.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str.
           EC4045]
 gi|208741629|gb|EDZ89311.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str.
           EC4042]
 gi|209161254|gb|ACI38687.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str.
           EC4115]
 gi|209746524|gb|ACI71569.1| D-alanine-D-alanine ligase B [Escherichia coli]
 gi|209746526|gb|ACI71570.1| D-alanine-D-alanine ligase B [Escherichia coli]
 gi|209746528|gb|ACI71571.1| D-alanine-D-alanine ligase B [Escherichia coli]
 gi|209746532|gb|ACI71573.1| D-alanine-D-alanine ligase B [Escherichia coli]
 gi|217321806|gb|EEC30230.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str.
           TW14588]
 gi|254590629|gb|ACT69990.1| D-alanine:D-alanine ligase [Escherichia coli O157:H7 str. TW14359]
 gi|320190385|gb|EFW65035.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str.
           EC1212]
 gi|320642131|gb|EFX11482.1| D-alanine--D-alanine ligase [Escherichia coli O157:H7 str. G5101]
 gi|320647494|gb|EFX16289.1| D-alanine--D-alanine ligase [Escherichia coli O157:H- str. 493-89]
 gi|320652828|gb|EFX21066.1| D-alanine--D-alanine ligase [Escherichia coli O157:H- str. H 2687]
 gi|320668838|gb|EFX35633.1| D-alanine--D-alanine ligase [Escherichia coli O157:H7 str. LSU-61]
 gi|326345188|gb|EGD68931.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str. 1125]
 gi|326346958|gb|EGD70692.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str. 1044]
          Length = 306

 Score =  176 bits (445), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 108/303 (35%), Positives = 164/303 (54%), Gaps = 13/303 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SG A  + L + G     +D        L  +     F  LHG
Sbjct: 5   IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118
             GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK +    G+PV P + + R     
Sbjct: 65  RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRVEFEK 124

Query: 119 ---DSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
              D Q      +  P ++KP + GSS+G+  +  + ++  D L+  ++ H +++LIE++
Sbjct: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQ-DALR-LAFQHDEEVLIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L    I  P   FY YE KY S  + +  PA +       +Q L 
Sbjct: 183 LSGPEFTVAILGEEILPSVRIQ-PSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A   +GC+G  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 242 LKAWTTLGCKGWGRIDVMLDS-DGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300

Query: 292 MVE 294
           ++E
Sbjct: 301 ILE 303


>gi|288939897|ref|YP_003442137.1| D-alanine/D-alanine ligase [Allochromatium vinosum DSM 180]
 gi|288895269|gb|ADC61105.1| D-alanine/D-alanine ligase [Allochromatium vinosum DSM 180]
          Length = 308

 Score =  175 bits (444), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 103/295 (34%), Positives = 165/295 (55%), Gaps = 5/295 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +A+LMGG ++ERE+SL SG+A   AL+  G  V  ID D ++   L     D AF +LHG
Sbjct: 15  VALLMGGQAAEREISLKSGRAVHEALQRLGVDVEPIDPDATLLERLRTGGYDRAFIILHG 74

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV-NRFTMD 119
             GEDG +Q  LE + +PYT SG+L SAL MDK R K   + CG+P    +L+ +   + 
Sbjct: 75  RGGEDGQIQGALETIGLPYTGSGVLGSALGMDKYRCKLAWAGCGLPTADFVLLRDESDLT 134

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
           +   +  P +IKP+  GSS+G+  ++  + +      ++ ++    +L E+++ G+ELTC
Sbjct: 135 AAAELGFPLMIKPVHEGSSIGMARVESVEGLERAWRAAAEFD--SLVLAERWIQGMELTC 192

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
            ++G  +L    +  P + FY YE KYS+ ++ +  P+ +  ++   ++ LA  A   +G
Sbjct: 193 AILGHEALPTIRLETPHA-FYDYEAKYSADSTRYHCPSGLDAEVEARLRALALEAFDVVG 251

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             G  R D + D   +  F LEIN  PGMT  S+ P  A  AG  F +L+  ++E
Sbjct: 252 ASGWGRVDMMLDGTGQP-FLLEINTVPGMTDHSLVPMAARVAGIDFDDLVWRILE 305


>gi|167854933|ref|ZP_02477708.1| D-alanine--D-alanine ligase [Haemophilus parasuis 29755]
 gi|219870393|ref|YP_002474768.1| D-alanine--D-alanine ligase [Haemophilus parasuis SH0165]
 gi|254767730|sp|B8F3B8|DDL_HAEPS RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|167853890|gb|EDS25129.1| D-alanine--D-alanine ligase [Haemophilus parasuis 29755]
 gi|219690597|gb|ACL31820.1| D-alanine--D-alanine ligase [Haemophilus parasuis SH0165]
          Length = 303

 Score =  175 bits (444), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 108/298 (36%), Positives = 169/298 (56%), Gaps = 9/298 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG+S+ERE+SL+SGK+   AL+  G+ V  ID        L        FN+LHG
Sbjct: 8   IAVLFGGVSAEREISLNSGKSVFEALQSLGYNVEAIDTKEFPIEKLKEKGIQRVFNILHG 67

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF-TMD 119
             GE+G++Q  LE L IPYT  G++ASA+++DK R+K + ++ G+P     +V R   ++
Sbjct: 68  GIGENGVLQGALEQLGIPYTGCGVMASAITLDKFRTKLLWNAVGLPTAAMEVVRRGQAVN 127

Query: 120 SQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
           S  +I+    P  +KP   GSS+G+  +K  + +   + ++  ++    +L+E+ + G E
Sbjct: 128 SDEIIAKLGLPLFVKPASEGSSVGVSKVKTAEQLLPAIEEALKYD--SIVLVEENLAGAE 185

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
            +  V+    L   +I +P  +FY Y  KY S N+ +V+PA +  D   EV +L   A+ 
Sbjct: 186 YSVPVLDGEVLPAVQI-IPDGEFYDYHAKYISDNTQYVVPA-LNADRQAEVAKLVKQAYD 243

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            +GCRG SR D + D        +E+N  PGMT  SIFP+ AA  GYSF  L+  ++E
Sbjct: 244 VVGCRGWSRIDVMEDG-EGNFRLVEVNTCPGMTSHSIFPKSAATVGYSFERLVERVLE 300


>gi|260853305|ref|YP_003227196.1| D-alanine:D-alanine ligase [Escherichia coli O26:H11 str. 11368]
 gi|257751954|dbj|BAI23456.1| D-alanine:D-alanine ligase [Escherichia coli O26:H11 str. 11368]
 gi|323157841|gb|EFZ43944.1| D-alanine--D-alanine ligase B [Escherichia coli EPECa14]
          Length = 306

 Score =  175 bits (444), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 108/303 (35%), Positives = 164/303 (54%), Gaps = 13/303 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SG A  + L + G     +D        L  +     F  LHG
Sbjct: 5   IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118
             GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK +    G+PV P + + R     
Sbjct: 65  RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124

Query: 119 ---DSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
              D Q      +  P ++KP + GSS+G+  +  + ++  D L+  ++ H +++LIE++
Sbjct: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQ-DALR-LAFQHDEEVLIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L    I  P   FY YE KY S  + +  PA +       +Q L 
Sbjct: 183 LSGPEFTVAILGEEILPSIRIQ-PSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A   +GC+G  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 242 LKAWTTLGCKGWGRIDVMLDSYG-QFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300

Query: 292 MVE 294
           ++E
Sbjct: 301 ILE 303


>gi|291280917|ref|YP_003497735.1| D-alanine--D-alanine ligase B [Escherichia coli O55:H7 str. CB9615]
 gi|209746530|gb|ACI71572.1| D-alanine-D-alanine ligase B [Escherichia coli]
 gi|290760790|gb|ADD54751.1| D-alanine--D-alanine ligase B [Escherichia coli O55:H7 str. CB9615]
 gi|320658217|gb|EFX25946.1| D-alanine--D-alanine ligase [Escherichia coli O55:H7 str. 3256-97
           TW 07815]
 gi|320663526|gb|EFX30810.1| D-alanine--D-alanine ligase [Escherichia coli O55:H7 str. USDA
           5905]
          Length = 306

 Score =  175 bits (444), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 108/303 (35%), Positives = 164/303 (54%), Gaps = 13/303 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SG A  + L + G     +D        L  +     F  LHG
Sbjct: 5   IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118
             GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK +    G+PV P + + R     
Sbjct: 65  RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRVEFEK 124

Query: 119 ---DSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
              D Q      +  P ++KP + GSS+G+  +  + ++  D L+  ++ H +++LIE++
Sbjct: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQ-DALR-LAFQHDEEVLIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L    I  P   FY YE KY S  + +  PA +       +Q L 
Sbjct: 183 LSGPEFTVAILGEEILPSIRIQ-PSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A   +GC+G  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 242 LKAWTTLGCKGWGRIDVMLDS-DGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300

Query: 292 MVE 294
           ++E
Sbjct: 301 ILE 303


>gi|218552675|ref|YP_002385588.1| D-alanine--D-alanine ligase [Escherichia coli IAI1]
 gi|218693561|ref|YP_002401228.1| D-alanine--D-alanine ligase [Escherichia coli 55989]
 gi|256020070|ref|ZP_05433935.1| D-alanine--D-alanine ligase [Shigella sp. D9]
 gi|332281220|ref|ZP_08393633.1| D-alanine:D-alanine ligase [Shigella sp. D9]
 gi|218350293|emb|CAU95976.1| D-alanine:D-alanine ligase [Escherichia coli 55989]
 gi|218359443|emb|CAQ96981.1| D-alanine:D-alanine ligase [Escherichia coli IAI1]
 gi|324118442|gb|EGC12336.1| D-alanine-D-alanine ligase [Escherichia coli E1167]
 gi|332103572|gb|EGJ06918.1| D-alanine:D-alanine ligase [Shigella sp. D9]
          Length = 306

 Score =  175 bits (444), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 108/303 (35%), Positives = 164/303 (54%), Gaps = 13/303 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SG A  + L + G     +D        L  +     F  LHG
Sbjct: 5   IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118
             GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK +    G+PV P + + R     
Sbjct: 65  RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124

Query: 119 ---DSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
              D Q      +  P ++KP + GSS+G+  +  + ++  D L+  ++ H +++LIE++
Sbjct: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQ-DALR-LAFQHDEEVLIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L    I  P   FY YE KY S  + +  PA +       +Q L 
Sbjct: 183 LSGPEFTVAILGEEILPSIRIQ-PSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQELV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A   +GC+G  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 242 LKAWTTLGCKGWGRIDVMLDS-DGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300

Query: 292 MVE 294
           ++E
Sbjct: 301 ILE 303


>gi|187930155|ref|YP_001900642.1| D-alanine--D-alanine ligase [Ralstonia pickettii 12J]
 gi|229485977|sp|B2UCX5|DDL_RALPJ RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|187727045|gb|ACD28210.1| D-alanine/D-alanine ligase [Ralstonia pickettii 12J]
          Length = 331

 Score =  175 bits (444), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 106/304 (34%), Positives = 163/304 (53%), Gaps = 11/304 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VLMGG S+ERE+SL SG    +AL   G      D        LA    D     LHG
Sbjct: 20  VGVLMGGRSAEREISLMSGNGVLAALRARGVDAHAFDPGLQAVADLAKQGFDRVVISLHG 79

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG +Q +LE   IPYT SG+LASAL+MDK  +K+   + G+P  P  ++     D 
Sbjct: 80  RFGEDGTIQGLLEQFGIPYTGSGVLASALAMDKEATKRQWQTHGLPT-PDFVMLHAGADW 138

Query: 121 QHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
           Q +   +  P ++KP + GSS+G+  +     +P    +++  +    ++ EQ+++G EL
Sbjct: 139 QAVADRLGLPLIVKPAREGSSIGLTKVTSVAELPAAYEKAARLDR--DVMAEQFIEGDEL 196

Query: 178 TCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           TC ++G+     +L +  I  P+++ Y Y+ KY + ++ +  PA IP D+   VQ L   
Sbjct: 197 TCPIIGEGESATALPLIRIVAPQAN-YDYQNKYFTDDTRYECPAPIPADVAARVQALVVQ 255

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           A++ +GCRG  R+D +        F LE+N  PGMT  S+ P  A  AG S+ + +L + 
Sbjct: 256 AYRGLGCRGWGRADIMLRKSDNAPFLLEMNTSPGMTGHSLVPMGARAAGISYEDFVLQLA 315

Query: 294 EDAS 297
             AS
Sbjct: 316 ASAS 319


>gi|260842328|ref|YP_003220106.1| D-alanine:D-alanine ligase [Escherichia coli O103:H2 str. 12009]
 gi|257757475|dbj|BAI28972.1| D-alanine:D-alanine ligase [Escherichia coli O103:H2 str. 12009]
          Length = 306

 Score =  175 bits (444), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 109/303 (35%), Positives = 164/303 (54%), Gaps = 13/303 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SG A  + L + G     +D        L  +     F  LHG
Sbjct: 5   IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118
             GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK +    G+PV P + + R     
Sbjct: 65  RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124

Query: 119 ---DSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
              D Q      +  P ++KP + GSS+G+  +  + ++  D L+  ++ H +++LIE++
Sbjct: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQ-DALR-LAFQHDEEVLIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  V+G+  L    I  P   FY YE KY S  + +  PA +       +Q L 
Sbjct: 183 LSGPEFTVAVLGEEILPSIRIQ-PSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A   +GC+G  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 242 LKAWTTLGCKGWGRIDVMLDS-DGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300

Query: 292 MVE 294
           ++E
Sbjct: 301 ILE 303


>gi|225077392|ref|ZP_03720591.1| hypothetical protein NEIFLAOT_02453 [Neisseria flavescens
           NRL30031/H210]
 gi|224951276|gb|EEG32485.1| hypothetical protein NEIFLAOT_02453 [Neisseria flavescens
           NRL30031/H210]
          Length = 304

 Score =  175 bits (444), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 115/307 (37%), Positives = 171/307 (55%), Gaps = 23/307 (7%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD---LAFNV 57
           +AVLMGG SSEREVSL SG A  +AL+  G      D   +    L+ LK      AFN+
Sbjct: 7   VAVLMGGFSSEREVSLDSGAAILAALKSKGVDAHAFDPKETP---LSELKTQGFQTAFNI 63

Query: 58  LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-SILVNRF 116
           LHG FGEDG +Q  LEL+ IPYT SG+ ASAL MDK R K +  + G+PV   ++L +  
Sbjct: 64  LHGTFGEDGAIQGALELMGIPYTGSGVAASALGMDKYRCKLIWQAVGLPVPEFAVLHDDS 123

Query: 117 TMDS-QHLISPPYVIKPLKGGSSLGIIVIKKDQSIP-----LDLLQSSSWNHGDQLLIEQ 170
             D+ +  +  P  +KP   GSS+G++ +K+   +      L  LQ        +++ E+
Sbjct: 124 DFDAVEEKLGLPMFVKPASEGSSVGVVKVKEKGRLKSVYEELKHLQG-------EIIAER 176

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR- 229
           ++ G E +C V+    L    I +P ++FY YE KY+  ++ +  P++   +  + + R 
Sbjct: 177 FIGGGEYSCPVLNGKGLPSIHI-IPAAEFYDYEAKYNRDDTVYQCPSEDLSEAEENLMRE 235

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           LA    QAIG  G SR DFL D +  K++ LEIN  PGMT  S+ P+ A + G  F +L 
Sbjct: 236 LAVRGAQAIGADGCSRVDFLKD-MDGKLYLLEINTLPGMTSHSLVPKSAGHTGVDFTDLC 294

Query: 290 LWMVEDA 296
           + +++ A
Sbjct: 295 IEILKTA 301


>gi|312898959|ref|ZP_07758347.1| D-ala D-ala ligase [Megasphaera micronuciformis F0359]
 gi|310620121|gb|EFQ03693.1| D-ala D-ala ligase [Megasphaera micronuciformis F0359]
          Length = 312

 Score =  175 bits (443), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 105/310 (33%), Positives = 170/310 (54%), Gaps = 21/310 (6%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFK--VSQIDVDRSVGLVLAHLKPDLAFNVL 58
           +AV++GG S+E  VS +SGK  A+AL   G+   ++++ V       L   + D+ FN L
Sbjct: 9   IAVIVGGPSTEAAVSRNSGKNVAAALRAKGYDPIITEL-VPEEWARTLKEGQFDIVFNAL 67

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
           HG +GEDG++Q   E++ IPYT  G++ASA+ M+K+ SK      G+   P     R+  
Sbjct: 68  HGRYGEDGVLQGTCEMMNIPYTGPGVMASAVGMNKVVSKSAFVGAGISTAPF----RYYF 123

Query: 119 DSQ----------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168
           + Q           + S P VIK    GSS+G ++++K   +   L  S ++ +G  ++ 
Sbjct: 124 EEQGVDSIAEEILQVFSLPVVIKSAAQGSSIGTVIVRKKDDLKSAL--SEAFAYGKSIVA 181

Query: 169 EQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           E ++ G E T  VM + +  V EI + K+  Y YE KY+   S H+ PA+IP ++ KE+Q
Sbjct: 182 EAFLSGREFTVAVMDELAFPVIEI-ISKTGRYDYESKYTPGLSEHICPAQIPPELTKELQ 240

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
            L+    +   C+G++R D + D  + K + LEIN  PGMT  S+ P+ +   G  F +L
Sbjct: 241 DLSLAVFRLFHCKGVARVDLMTDE-NGKAYVLEINTVPGMTETSLVPDASRAMGMPFEDL 299

Query: 289 LLWMVEDASC 298
              ++E+AS 
Sbjct: 300 CERILEEAST 309


>gi|309787232|ref|ZP_07681844.1| D-alanine--D-alanine ligase B [Shigella dysenteriae 1617]
 gi|308924810|gb|EFP70305.1| D-alanine--D-alanine ligase B [Shigella dysenteriae 1617]
          Length = 306

 Score =  175 bits (443), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 108/303 (35%), Positives = 164/303 (54%), Gaps = 13/303 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SG A  + L + G     +D        L  +     F  LHG
Sbjct: 5   IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118
             GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK +    G+PV P + + R     
Sbjct: 65  RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124

Query: 119 ---DSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
              D Q      +  P ++KP + GSS+G+  +  + ++  D L+  ++ H +++LIE++
Sbjct: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQ-DALR-LAFQHDEEVLIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L    I  P   FY YE KY S  + +  PA +       +Q L 
Sbjct: 183 LSGQEFTVAILGEEILPSIRIQ-PSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A   +GC+G  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 242 LKAWTTLGCKGWGRIDVMLDS-DGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300

Query: 292 MVE 294
           ++E
Sbjct: 301 ILE 303


>gi|218698515|ref|YP_002406144.1| D-alanine--D-alanine ligase [Escherichia coli IAI39]
 gi|218368501|emb|CAR16236.1| D-alanine:D-alanine ligase [Escherichia coli IAI39]
          Length = 306

 Score =  175 bits (443), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 108/303 (35%), Positives = 164/303 (54%), Gaps = 13/303 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SG A  + L + G     +D        L  +     F  LHG
Sbjct: 5   IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118
             GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK +    G+PV P + + R     
Sbjct: 65  RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVTLTRAEFEK 124

Query: 119 ---DSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
              D Q      +  P ++KP + GSS+G+  +  + ++  D L+  ++ H +++LIE++
Sbjct: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQ-DALR-LAFQHDEEVLIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L    I  P   FY YE KY S  + +  PA +       +Q L 
Sbjct: 183 LSGPEFTVAILGEEILPSIRIQ-PSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A   +GC+G  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 242 LKAWTTLGCKGWGRIDVMLDS-DGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300

Query: 292 MVE 294
           ++E
Sbjct: 301 ILE 303


>gi|254037507|ref|ZP_04871584.1| ddl cell wall enzyme [Escherichia sp. 1_1_43]
 gi|226840613|gb|EEH72615.1| ddl cell wall enzyme [Escherichia sp. 1_1_43]
          Length = 306

 Score =  175 bits (443), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 108/303 (35%), Positives = 164/303 (54%), Gaps = 13/303 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SG A  + L + G     +D        L  +     F  LHG
Sbjct: 5   IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGLQKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118
             GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK +    G+PV P + + R     
Sbjct: 65  RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124

Query: 119 ---DSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
              D Q      +  P ++KP + GSS+G+  +  + ++  D L+  ++ H +++LIE++
Sbjct: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQ-DALR-LAFQHDEEVLIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L    I  P   FY YE KY S  + +  PA +       +Q L 
Sbjct: 183 LSGPEFTVAILGEEILPSIRIQ-PSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A   +GC+G  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 242 LKAWTTLGCKGWGRIDVMLDS-DGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300

Query: 292 MVE 294
           ++E
Sbjct: 301 ILE 303


>gi|213966565|ref|ZP_03394716.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. tomato T1]
 gi|301384720|ref|ZP_07233138.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. tomato Max13]
 gi|302059792|ref|ZP_07251333.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. tomato K40]
 gi|302131739|ref|ZP_07257729.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. tomato NCPPB
           1108]
 gi|213928415|gb|EEB61959.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. tomato T1]
 gi|331016736|gb|EGH96792.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. lachrymans
           str. M302278PT]
          Length = 319

 Score =  175 bits (443), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 115/303 (37%), Positives = 171/303 (56%), Gaps = 8/303 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL+SG A   AL DAG     IDV       L   K D AF VLHG
Sbjct: 21  VAVLFGGKSAEREVSLNSGNAVLKALLDAGVDAFGIDVGDDFLQRLVSEKIDRAFIVLHG 80

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV--PVCPSILVNRFTM 118
             GEDG +Q +LE LEIPYT SG+LASAL+MDK+R+KQV  S G+  P+   +      +
Sbjct: 81  RGGEDGTMQGLLECLEIPYTGSGVLASALAMDKLRTKQVWQSLGLATPLHAVLENENDCI 140

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   +  P ++KP   GSS+G+  +     +      +S+++   Q+L+EQ++ G E T
Sbjct: 141 CAATELGFPLIVKPAHEGSSIGMAKVNSVDELIAAWKAASTYDS--QVLVEQWIQGPEFT 198

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +    L    +  P S FY Y+ KY + ++ + +P  +     +++++LA  A  AI
Sbjct: 199 VASLRGQVLPPIGLGTPHS-FYDYDAKYLASDTQYRIPCGLDDAQEQQLKQLAARACDAI 257

Query: 239 GCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           G  G +R+D + D   +  FW LE+N  PGMT  S+ P  A  AG +F++L+L ++ D+ 
Sbjct: 258 GIAGWARTDVMQDAEGK--FWLLEVNTVPGMTDHSLVPMAARAAGLNFQQLVLAILADSV 315

Query: 298 CLR 300
             R
Sbjct: 316 QAR 318


>gi|237799293|ref|ZP_04587754.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. oryzae str.
           1_6]
 gi|331022149|gb|EGI02206.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. oryzae str.
           1_6]
          Length = 319

 Score =  175 bits (443), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 117/303 (38%), Positives = 170/303 (56%), Gaps = 8/303 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL+SG A   AL DAG     IDV       L   K D AF VLHG
Sbjct: 21  VAVLFGGKSAEREVSLNSGNAVLKALLDAGVDAFGIDVGDDFLHRLVSEKIDRAFIVLHG 80

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV-CPSILVNRF-TM 118
             GEDG +Q +LE LEIPYT SG+LASAL+MDK+R+KQV  S G+P    ++L N    +
Sbjct: 81  RGGEDGTMQGLLECLEIPYTGSGVLASALAMDKLRTKQVWQSLGLPTPLHAVLENENDCI 140

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   +  P ++KP   GSS+G+  +     +      +S+++   Q+L+EQ++ G E T
Sbjct: 141 CAATELGFPLIVKPAHEGSSIGMAKVNSVDELIAAWKAASTYD--SQVLVEQWIQGPEFT 198

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +    L    +  P S FY Y+ KY + ++ + +P  +     + ++ LA  A  AI
Sbjct: 199 VASLRGQVLPPIGLGTPHS-FYDYDAKYLASDTQYRIPCGLGDVQEQALKELAARACDAI 257

Query: 239 GCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           G  G +R+D + D   +  FW LE+N  PGMT  S+ P  A  AG  F++L+L ++ D+ 
Sbjct: 258 GIAGWARTDVMQDAQGK--FWLLEVNTVPGMTDHSLVPMAARAAGLDFQQLVLAILADSV 315

Query: 298 CLR 300
             R
Sbjct: 316 QAR 318


>gi|299533116|ref|ZP_07046501.1| D-alanine--D-alanine ligase [Comamonas testosteroni S44]
 gi|298718893|gb|EFI59865.1| D-alanine--D-alanine ligase [Comamonas testosteroni S44]
          Length = 323

 Score =  175 bits (443), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 110/297 (37%), Positives = 162/297 (54%), Gaps = 11/297 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSEREVSL SG    +AL+  G    + D        L     D  F  LHG
Sbjct: 16  VAVLMGGRSSEREVSLMSGAGVLAALQSKGVDAHKFDPAEQGLEQLKVQGFDRCFIALHG 75

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF--TM 118
            +GEDG VQ  LELL+IPYT SG++AS+++MDK+ +K++    G+P     +V     T 
Sbjct: 76  RYGEDGTVQGALELLDIPYTGSGVMASSIAMDKIMTKRIWRFEGLPTPDWRMVASAAETR 135

Query: 119 DSQHLISPPYVIKPLKGGSSLGII-VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            +   +  P ++KP + GSS+G+  V+  D+      L +    +  ++L EQ++ G E 
Sbjct: 136 AALEALGAPMIVKPARDGSSIGLTKVMNADECAKAYELAA---QYDAEVLCEQFIAGDET 192

Query: 178 TCGVMGD----ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           TC V+G     A+L V  I  P+ + Y Y+ KY +  + +  P+ +P     E+QR+   
Sbjct: 193 TCPVLGTGAKAAALPVIRIVAPEGN-YDYQNKYFTDTTQYHCPSGLPAAEEAEIQRIVEK 251

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A + +GCRG +R+D +     RK F LEIN  PGMT  S+ P  A  +G S+  L L
Sbjct: 252 AFRTLGCRGWARADIMIRASDRKPFLLEINTSPGMTGHSLVPMAARASGVSYENLCL 308


>gi|170683837|ref|YP_001742214.1| D-alanine--D-alanine ligase [Escherichia coli SMS-3-5]
 gi|170521555|gb|ACB19733.1| D-alanine--D-alanine ligase B [Escherichia coli SMS-3-5]
          Length = 306

 Score =  175 bits (443), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 108/303 (35%), Positives = 166/303 (54%), Gaps = 13/303 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SG A  + L + G     +D        L  +     F  LHG
Sbjct: 5   IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117
             GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK +    G+PV P + + R     
Sbjct: 65  RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124

Query: 118 -MDSQHL-----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
            ++ Q L     +  P ++KP + GSS+G+  +  + ++  D L+  ++ H +++LIE++
Sbjct: 125 GLNDQQLAEISSLGLPVIVKPSREGSSVGMSKVVAENALQ-DALR-LAFQHDEEVLIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L    I  P   FY YE KY S  + +  PA +       +Q L 
Sbjct: 183 LSGPEFTVAILGEEILPSIRIQ-PAGTFYDYEAKYLSDETQYFCPAGLEALQEANLQALV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A   +GC+G  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 242 LKAWTTLGCKGWGRIDVMLDS-DGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300

Query: 292 MVE 294
           ++E
Sbjct: 301 ILE 303


>gi|260596517|ref|YP_003209088.1| D-alanine--D-alanine ligase [Cronobacter turicensis z3032]
 gi|260215694|emb|CBA28033.1| D-alanine--D-alanine ligase B [Cronobacter turicensis z3032]
          Length = 326

 Score =  175 bits (443), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 111/308 (36%), Positives = 168/308 (54%), Gaps = 17/308 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL SG A  + L+ AG     +D        L     D  F  LHG
Sbjct: 25  IAVLLGGSSAEREVSLQSGSAVLAGLKQAGVDAYAVDPRDVCVTTLKEEGFDKVFIALHG 84

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119
             GEDG +Q  LE L +PYT SG++ASA++MDK+R+K +    G+PV P + + R  +  
Sbjct: 85  RGGEDGTLQGTLEYLGLPYTGSGVMASAITMDKLRTKLLWQGAGLPVAPWVALERHDIRG 144

Query: 120 --SQHL------ISPPYVIKPLKGGSSLGIIVIKKDQSI--PLDLLQSSSWNHGDQLLIE 169
             S+ L      +  P ++KP + GSS+G+  +   Q++   L+L    ++ H  ++L+E
Sbjct: 145 GLSEALSARIAALGLPVIVKPSREGSSVGMSKVDSAQALLPALEL----AFEHDSEVLVE 200

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           +++ G E T  ++GD  L    I  P   FY YE KY S  + +  PA I     + +Q 
Sbjct: 201 KWLSGPEFTVAILGDDILPSIRIQ-PAGVFYDYEAKYLSDETQYFCPAGIDAGREQALQA 259

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           L   A + +GCRG  R D + D    + + LE+N  PGMT  S+ P  A  AG SF +L+
Sbjct: 260 LVLEAWRVLGCRGWGRVDVMQDS-DGEFYLLEVNTAPGMTSHSLVPMAARQAGMSFSQLV 318

Query: 290 LWMVEDAS 297
           + ++E A+
Sbjct: 319 VRILELAN 326


>gi|218687969|ref|YP_002396181.1| D-alanine--D-alanine ligase [Escherichia coli ED1a]
 gi|306815310|ref|ZP_07449459.1| D-alanine--D-alanine ligase [Escherichia coli NC101]
 gi|218425533|emb|CAR06316.1| D-alanine:D-alanine ligase [Escherichia coli ED1a]
 gi|222031923|emb|CAP74661.1| D-alanine--D-alanine ligase B [Escherichia coli LF82]
 gi|305850972|gb|EFM51427.1| D-alanine--D-alanine ligase [Escherichia coli NC101]
 gi|312944698|gb|ADR25525.1| D-alanine--D-alanine ligase [Escherichia coli O83:H1 str. NRG 857C]
 gi|315300007|gb|EFU59245.1| D-ala D-ala ligase [Escherichia coli MS 16-3]
 gi|324008327|gb|EGB77546.1| D-ala D-ala ligase [Escherichia coli MS 57-2]
          Length = 306

 Score =  175 bits (443), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 107/303 (35%), Positives = 166/303 (54%), Gaps = 13/303 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SG A  + L + G     +D        L  +     F  LHG
Sbjct: 5   IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117
             GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK +    G+PV P + + R     
Sbjct: 65  RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124

Query: 118 -MDSQHL-----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
            ++ + L     +  P ++KP + GSS+G+  +  + ++  D L+  ++ H +++LIE++
Sbjct: 125 GLNDKQLAEISSLGLPVIVKPSREGSSVGMSKVVAENALQ-DALR-LAFQHDEEVLIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L    I  P   FY YE KY S  + +  PA +       +Q L 
Sbjct: 183 LSGPEFTVAILGEEILPSIRIQ-PAGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A   +GC+G  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 242 LKAWTTLGCKGWGRIDVMLDS-DGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300

Query: 292 MVE 294
           ++E
Sbjct: 301 ILE 303


>gi|293603446|ref|ZP_06685871.1| D-alanine-D-alanine ligase B [Achromobacter piechaudii ATCC 43553]
 gi|292818148|gb|EFF77204.1| D-alanine-D-alanine ligase B [Achromobacter piechaudii ATCC 43553]
          Length = 316

 Score =  175 bits (443), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 117/307 (38%), Positives = 165/307 (53%), Gaps = 16/307 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VL GG S+EREVSL SGK    AL  AG      D        LA    D  F  LHG
Sbjct: 8   VGVLYGGRSAEREVSLMSGKGVQQALASAGVDAHLFDTGERSLAELAAEGFDRVFIALHG 67

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG +Q  LELL IPYT SG +ASAL+MDK  +K++    G+P  P   V     D+
Sbjct: 68  RYGEDGTIQGALELLGIPYTGSGPMASALAMDKTMTKRLWLQVGLPT-PEFEV--LDADT 124

Query: 121 QHLISP-----PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175
           +  + P     P +IKP   GS++GI  +     +      ++ ++    +L EQ++ G 
Sbjct: 125 ELRLVPDRLSLPLIIKPPHEGSTVGITKVVGYSDMKEAYAAAARFD--SVVLAEQFIIGR 182

Query: 176 ELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           ELT  V+G      +L V EIA P  + Y YE KY S ++    PA +P  + +EV  +A
Sbjct: 183 ELTVAVLGSGKGARALPVIEIAAPGGN-YDYEHKYFSDDTQFFCPATLPDGVAEEVAEIA 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A+QA+GC G  R+DF+ D  +R  + LE+N  PGMT  S+ P  A   G S+ +L + 
Sbjct: 242 VKAYQALGCEGWGRADFILDRDNRP-WLLEMNTSPGMTSHSLVPMAAKAVGISYADLCVS 300

Query: 292 MVEDASC 298
           ++ +ASC
Sbjct: 301 ILSEASC 307


>gi|82775499|ref|YP_401846.1| D-alanine--D-alanine ligase [Shigella dysenteriae Sd197]
 gi|81239647|gb|ABB60357.1| D-alanine-D-alanine ligase B [Shigella dysenteriae Sd197]
          Length = 306

 Score =  175 bits (443), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 108/303 (35%), Positives = 164/303 (54%), Gaps = 13/303 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SG A  + L + G     +D        L  +     F  LHG
Sbjct: 5   IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118
             GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK +    G+PV P + + R     
Sbjct: 65  RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVVPWVALTRAEFEK 124

Query: 119 ---DSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
              D Q      +  P ++KP + GSS+G+  +  + ++  D L+  ++ H +++LIE++
Sbjct: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQ-DALR-LAFQHDEEVLIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L    I  P   FY YE KY S  + +  PA +       +Q L 
Sbjct: 183 LSGQEFTVAILGEEILPSIRIQ-PSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A   +GC+G  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 242 LKAWTTLGCKGWGRIDVMLDS-DGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300

Query: 292 MVE 294
           ++E
Sbjct: 301 ILE 303


>gi|16128085|ref|NP_414634.1| D-alanine:D-alanine ligase [Escherichia coli str. K-12 substr.
           MG1655]
 gi|74310711|ref|YP_309130.1| D-alanine--D-alanine ligase [Shigella sonnei Ss046]
 gi|89106975|ref|AP_000755.1| D-Alanine:D-alanine ligase [Escherichia coli str. K-12 substr.
           W3110]
 gi|157159563|ref|YP_001456881.1| D-alanine--D-alanine ligase [Escherichia coli HS]
 gi|170021552|ref|YP_001726506.1| D-alanine--D-alanine ligase [Escherichia coli ATCC 8739]
 gi|170079731|ref|YP_001729051.1| D-alanine:D-alanine ligase [Escherichia coli str. K-12 substr.
           DH10B]
 gi|188494627|ref|ZP_03001897.1| D-alanine--D-alanine ligase [Escherichia coli 53638]
 gi|193065887|ref|ZP_03046948.1| D-alanine--D-alanine ligase B [Escherichia coli E22]
 gi|194429381|ref|ZP_03061906.1| D-alanine--D-alanine ligase B [Escherichia coli B171]
 gi|209917285|ref|YP_002291369.1| D-alanine--D-alanine ligase [Escherichia coli SE11]
 gi|218703352|ref|YP_002410871.1| D-alanine--D-alanine ligase [Escherichia coli UMN026]
 gi|238899493|ref|YP_002925289.1| D-alanine:D-alanine ligase [Escherichia coli BW2952]
 gi|256025406|ref|ZP_05439271.1| D-alanine--D-alanine ligase [Escherichia sp. 4_1_40B]
 gi|260866245|ref|YP_003232647.1| D-alanine:D-alanine ligase [Escherichia coli O111:H- str. 11128]
 gi|293403164|ref|ZP_06647261.1| ddl [Escherichia coli FVEC1412]
 gi|293408183|ref|ZP_06652023.1| conserved hypothetical protein [Escherichia coli B354]
 gi|293417968|ref|ZP_06660590.1| D-alanine-D-alanine ligase [Escherichia coli B185]
 gi|300816130|ref|ZP_07096353.1| D-ala D-ala ligase [Escherichia coli MS 107-1]
 gi|300821903|ref|ZP_07102047.1| D-ala D-ala ligase [Escherichia coli MS 119-7]
 gi|300900877|ref|ZP_07119014.1| D-ala D-ala ligase [Escherichia coli MS 198-1]
 gi|300905501|ref|ZP_07123265.1| D-ala D-ala ligase [Escherichia coli MS 84-1]
 gi|300919647|ref|ZP_07136138.1| D-ala D-ala ligase [Escherichia coli MS 115-1]
 gi|300923126|ref|ZP_07139186.1| D-ala D-ala ligase [Escherichia coli MS 182-1]
 gi|300949890|ref|ZP_07163853.1| D-ala D-ala ligase [Escherichia coli MS 116-1]
 gi|300955958|ref|ZP_07168291.1| D-ala D-ala ligase [Escherichia coli MS 175-1]
 gi|301026100|ref|ZP_07189575.1| D-ala D-ala ligase [Escherichia coli MS 69-1]
 gi|301028575|ref|ZP_07191805.1| D-ala D-ala ligase [Escherichia coli MS 196-1]
 gi|301303807|ref|ZP_07209927.1| D-ala D-ala ligase [Escherichia coli MS 124-1]
 gi|301330127|ref|ZP_07222796.1| D-ala D-ala ligase [Escherichia coli MS 78-1]
 gi|301646404|ref|ZP_07246286.1| D-ala D-ala ligase [Escherichia coli MS 146-1]
 gi|307136693|ref|ZP_07496049.1| D-alanine--D-alanine ligase [Escherichia coli H736]
 gi|307311457|ref|ZP_07591099.1| D-alanine/D-alanine ligase [Escherichia coli W]
 gi|312970186|ref|ZP_07784368.1| D-alanine--D-alanine ligase B [Escherichia coli 1827-70]
 gi|331640545|ref|ZP_08341693.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB)
           (D-Ala-D-Ala ligase B) [Escherichia coli H736]
 gi|331661466|ref|ZP_08362390.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB)
           (D-Ala-D-Ala ligase B) [Escherichia coli TA143]
 gi|331666329|ref|ZP_08367210.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB)
           (D-Ala-D-Ala ligase B) [Escherichia coli TA271]
 gi|331680666|ref|ZP_08381325.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB)
           (D-Ala-D-Ala ligase B) [Escherichia coli H591]
 gi|331681477|ref|ZP_08382114.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB)
           (D-Ala-D-Ala ligase B) [Escherichia coli H299]
 gi|118407|sp|P07862|DDLB_ECOLI RecName: Full=D-alanine--D-alanine ligase B; AltName:
           Full=D-Ala-D-Ala ligase B; AltName: Full=D-alanylalanine
           synthetase B
 gi|157831485|pdb|1IOV|A Chain A, Complex Of D-Ala:d-Ala Ligase With Adp And A Phosphoryl
           Phosphonate
 gi|157834791|pdb|2DLN|A Chain A, Vancomycin Resistance: Structure Of D-Alanine:d-Alanine
           Ligase At 2.3 Angstroms Resolution
 gi|40860|emb|CAA38869.1| D-Ala:D-Ala ligase (Ddl) [Escherichia coli]
 gi|145724|gb|AAA23672.1| ddl cell wall enzyme [Escherichia coli]
 gi|146030|gb|AAA23815.1| D-alanine:D-alanine ligase [Escherichia coli]
 gi|1786280|gb|AAC73203.1| D-alanine:D-alanine ligase [Escherichia coli str. K-12 substr.
           MG1655]
 gi|21321973|dbj|BAB96660.1| D-Alanine:D-alanine ligase [Escherichia coli str. K12 substr.
           W3110]
 gi|73854188|gb|AAZ86895.1| D-alanine-D-alanine ligase B [Shigella sonnei Ss046]
 gi|157065243|gb|ABV04498.1| D-alanine--D-alanine ligase B [Escherichia coli HS]
 gi|169756480|gb|ACA79179.1| D-alanine--D-alanine ligase [Escherichia coli ATCC 8739]
 gi|169887566|gb|ACB01273.1| D-alanine:D-alanine ligase [Escherichia coli str. K-12 substr.
           DH10B]
 gi|188489826|gb|EDU64929.1| D-alanine--D-alanine ligase [Escherichia coli 53638]
 gi|192926474|gb|EDV81107.1| D-alanine--D-alanine ligase B [Escherichia coli E22]
 gi|194412601|gb|EDX28898.1| D-alanine--D-alanine ligase B [Escherichia coli B171]
 gi|209910544|dbj|BAG75618.1| D-alanine-D-alanine ligase B [Escherichia coli SE11]
 gi|218430449|emb|CAR11315.1| D-alanine:D-alanine ligase [Escherichia coli UMN026]
 gi|238860726|gb|ACR62724.1| D-alanine:D-alanine ligase [Escherichia coli BW2952]
 gi|257762601|dbj|BAI34096.1| D-alanine:D-alanine ligase [Escherichia coli O111:H- str. 11128]
 gi|260450701|gb|ACX41123.1| D-alanine/D-alanine ligase [Escherichia coli DH1]
 gi|284919872|emb|CBG32927.1| D-alanine--D-alanine ligase B [Escherichia coli 042]
 gi|291430079|gb|EFF03093.1| ddl [Escherichia coli FVEC1412]
 gi|291430686|gb|EFF03684.1| D-alanine-D-alanine ligase [Escherichia coli B185]
 gi|291472434|gb|EFF14916.1| conserved hypothetical protein [Escherichia coli B354]
 gi|299878386|gb|EFI86597.1| D-ala D-ala ligase [Escherichia coli MS 196-1]
 gi|300317178|gb|EFJ66962.1| D-ala D-ala ligase [Escherichia coli MS 175-1]
 gi|300355641|gb|EFJ71511.1| D-ala D-ala ligase [Escherichia coli MS 198-1]
 gi|300395671|gb|EFJ79209.1| D-ala D-ala ligase [Escherichia coli MS 69-1]
 gi|300402651|gb|EFJ86189.1| D-ala D-ala ligase [Escherichia coli MS 84-1]
 gi|300413287|gb|EFJ96597.1| D-ala D-ala ligase [Escherichia coli MS 115-1]
 gi|300420581|gb|EFK03892.1| D-ala D-ala ligase [Escherichia coli MS 182-1]
 gi|300450722|gb|EFK14342.1| D-ala D-ala ligase [Escherichia coli MS 116-1]
 gi|300525503|gb|EFK46572.1| D-ala D-ala ligase [Escherichia coli MS 119-7]
 gi|300531337|gb|EFK52399.1| D-ala D-ala ligase [Escherichia coli MS 107-1]
 gi|300840934|gb|EFK68694.1| D-ala D-ala ligase [Escherichia coli MS 124-1]
 gi|300843874|gb|EFK71634.1| D-ala D-ala ligase [Escherichia coli MS 78-1]
 gi|301075374|gb|EFK90180.1| D-ala D-ala ligase [Escherichia coli MS 146-1]
 gi|306908436|gb|EFN38934.1| D-alanine/D-alanine ligase [Escherichia coli W]
 gi|309700303|emb|CBI99591.1| D-alanine--D-alanine ligase B [Escherichia coli ETEC H10407]
 gi|310337684|gb|EFQ02795.1| D-alanine--D-alanine ligase B [Escherichia coli 1827-70]
 gi|315059315|gb|ADT73642.1| D-alanine:D-alanine ligase [Escherichia coli W]
 gi|315134786|dbj|BAJ41945.1| ddl [Escherichia coli DH1]
 gi|315616129|gb|EFU96748.1| D-alanine--D-alanine ligase B [Escherichia coli 3431]
 gi|320200389|gb|EFW74975.1| D-alanylalanine synthetase [Escherichia coli EC4100B]
 gi|323160110|gb|EFZ46071.1| D-alanine--D-alanine ligase B [Escherichia coli E128010]
 gi|323165975|gb|EFZ51755.1| D-alanine--D-alanine ligase B [Shigella sonnei 53G]
 gi|323171255|gb|EFZ56903.1| D-alanine--D-alanine ligase B [Escherichia coli LT-68]
 gi|323176400|gb|EFZ61992.1| D-alanine--D-alanine ligase B [Escherichia coli 1180]
 gi|323181789|gb|EFZ67202.1| D-alanine--D-alanine ligase B [Escherichia coli 1357]
 gi|323380127|gb|ADX52395.1| D-alanine/D-alanine ligase [Escherichia coli KO11]
 gi|323939868|gb|EGB36068.1| D-alanine-D-alanine ligase [Escherichia coli E482]
 gi|324017747|gb|EGB86966.1| D-ala D-ala ligase [Escherichia coli MS 117-3]
 gi|331040291|gb|EGI12498.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB)
           (D-Ala-D-Ala ligase B) [Escherichia coli H736]
 gi|331061381|gb|EGI33344.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB)
           (D-Ala-D-Ala ligase B) [Escherichia coli TA143]
 gi|331066540|gb|EGI38417.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB)
           (D-Ala-D-Ala ligase B) [Escherichia coli TA271]
 gi|331072129|gb|EGI43465.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB)
           (D-Ala-D-Ala ligase B) [Escherichia coli H591]
 gi|331081698|gb|EGI52859.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB)
           (D-Ala-D-Ala ligase B) [Escherichia coli H299]
 gi|332341424|gb|AEE54758.1| D-alanine--D-alanine ligase DdlB [Escherichia coli UMNK88]
          Length = 306

 Score =  175 bits (443), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 108/303 (35%), Positives = 164/303 (54%), Gaps = 13/303 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SG A  + L + G     +D        L  +     F  LHG
Sbjct: 5   IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118
             GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK +    G+PV P + + R     
Sbjct: 65  RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124

Query: 119 ---DSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
              D Q      +  P ++KP + GSS+G+  +  + ++  D L+  ++ H +++LIE++
Sbjct: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQ-DALR-LAFQHDEEVLIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L    I  P   FY YE KY S  + +  PA +       +Q L 
Sbjct: 183 LSGPEFTVAILGEEILPSIRIQ-PSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A   +GC+G  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 242 LKAWTTLGCKGWGRIDVMLDS-DGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300

Query: 292 MVE 294
           ++E
Sbjct: 301 ILE 303


>gi|215485258|ref|YP_002327689.1| D-alanine--D-alanine ligase [Escherichia coli O127:H6 str.
           E2348/69]
 gi|312966220|ref|ZP_07780446.1| D-alanine--D-alanine ligase B [Escherichia coli 2362-75]
 gi|215263330|emb|CAS07645.1| D-alanine: D-alanine ligase [Escherichia coli O127:H6 str.
           E2348/69]
 gi|312289463|gb|EFR17357.1| D-alanine--D-alanine ligase B [Escherichia coli 2362-75]
 gi|320197457|gb|EFW72071.1| D-alanine--D-alanine ligase B [Escherichia coli WV_060327]
          Length = 306

 Score =  175 bits (443), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 107/303 (35%), Positives = 166/303 (54%), Gaps = 13/303 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SG A  + L + G     +D        L  +     F  LHG
Sbjct: 5   IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117
             GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK +    G+PV P + + R     
Sbjct: 65  RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124

Query: 118 -MDSQHL-----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
            ++ + L     +  P ++KP + GSS+G+  +  + ++  D L+  ++ H +++LIE++
Sbjct: 125 GLNDKQLAEISSLGLPVIVKPSREGSSVGMSKVVAENTLQ-DALR-LAFQHDEEVLIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L    I  P   FY YE KY S  + +  PA +       +Q L 
Sbjct: 183 LSGPEFTVAILGEEILPSIRIQ-PSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A   +GC+G  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 242 LKAWTTLGCKGWGRIDVMLDS-DGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300

Query: 292 MVE 294
           ++E
Sbjct: 301 ILE 303


>gi|330501926|ref|YP_004378795.1| D-alanine--D-alanine ligase [Pseudomonas mendocina NK-01]
 gi|328916212|gb|AEB57043.1| D-alanine--D-alanine ligase [Pseudomonas mendocina NK-01]
          Length = 313

 Score =  175 bits (443), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 114/300 (38%), Positives = 170/300 (56%), Gaps = 10/300 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL SG A  SAL+ AG     IDV       L   K D AF VLHG
Sbjct: 15  VAVLFGGKSAEREVSLKSGNAVLSALQAAGVDAFGIDVGDDFLARLNSEKIDRAFIVLHG 74

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LE   IPYT SGILASAL+MDK+R+KQV  S G+P  P   V     D 
Sbjct: 75  RGGEDGSMQGLLECAGIPYTGSGILASALAMDKLRTKQVWHSLGLPT-PRHAVLTSQADC 133

Query: 121 QHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
           +   +    P ++KP   GSS+G+  ++  +++      ++ ++   Q+L+EQ++ G E 
Sbjct: 134 KAAATELGFPLIVKPAHEGSSIGMAKVESVEALVAAWQDAARYD--SQVLVEQWIAGPEY 191

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           T  V+    L    +  P + FY Y+ KY + ++ + +P  +  +   E++ L   A +A
Sbjct: 192 TIAVLRGEVLPPIGLGTPHT-FYDYDAKYLADDTQYRIPCGLSAEKEAELKSLTARACEA 250

Query: 238 IGCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +G +G +R+D + D   +  FW LE+N  PGMT  S+ P  A  AG  F++L+L ++ D+
Sbjct: 251 VGTQGWARADVMQDASGQ--FWLLEVNTVPGMTDHSLVPMAARAAGLDFQQLVLAILADS 308


>gi|331661138|ref|ZP_08362070.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB)
           (D-Ala-D-Ala ligase B) [Escherichia coli TA206]
 gi|331052180|gb|EGI24219.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB)
           (D-Ala-D-Ala ligase B) [Escherichia coli TA206]
          Length = 306

 Score =  175 bits (443), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 109/306 (35%), Positives = 165/306 (53%), Gaps = 19/306 (6%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SG A  + L + G     +D        L  +     F  LHG
Sbjct: 5   IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119
             GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK +    G+PV P + + R   + 
Sbjct: 65  RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124

Query: 120 -----------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168
                      SQ L   P ++KP + GSS+G+  +  + ++  D L+  ++ H +++LI
Sbjct: 125 GLNDKQLAEISSQGL---PVIVKPSREGSSVGMSKVVAENALQ-DALR-LAFQHDEEVLI 179

Query: 169 EQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           E+++ G E T  ++G+  L    I  P   FY YE KY S  + +  PA +       +Q
Sbjct: 180 EKWLSGPEFTVAILGEEILPSIRIQ-PAGTFYDYEAKYLSDETQYFCPAGLEASQEANLQ 238

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
            L   A   +GC+G  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L
Sbjct: 239 ALVLKAWTTLGCKGWGRIDVMLDS-DGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQL 297

Query: 289 LLWMVE 294
           ++ ++E
Sbjct: 298 VVRILE 303


>gi|325923954|ref|ZP_08185544.1| D-alanine--D-alanine ligase [Xanthomonas gardneri ATCC 19865]
 gi|325545580|gb|EGD16844.1| D-alanine--D-alanine ligase [Xanthomonas gardneri ATCC 19865]
          Length = 318

 Score =  174 bits (442), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 113/302 (37%), Positives = 169/302 (55%), Gaps = 16/302 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG SSEREVSL+SG     AL   G     +D   ++   L   + D  FNVLHG
Sbjct: 19  VAVLLGGTSSEREVSLNSGSNVLDALRARGVDARPVDGIPAMAQALVEKRFDRVFNVLHG 78

Query: 61  NFG--EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---SILVNR 115
           + G  EDG+VQ ++E  ++PYT S +L SALSMDK+R+KQV  S G+  C    + L   
Sbjct: 79  HNGGGEDGIVQGLMEAFKVPYTGSNVLGSALSMDKIRTKQVWLSLGL--CTPRYARLAAG 136

Query: 116 FTMDSQHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
            + D  H     I  P ++KP   GSS+GI  +     +   ++ ++ ++    LL+EQ 
Sbjct: 137 ASADQIHAAAQQIGLPVIVKPANEGSSVGISRVFDQAQLEEAVVLAARYDGA--LLMEQL 194

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           ++G ELT  V+G+ +L    I VPK  +Y Y  KY + ++ ++ P  +  D   ++++LA
Sbjct: 195 IEGDELTVAVLGEVALPSIRI-VPKGQWYDYNAKYVADDTQYLCPG-LEGDAETQIRQLA 252

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A +A G RG  R D + D  S +++ LE+N  PGMT  S+ P+ A   G  F E L+W
Sbjct: 253 LDAFRAAGARGWGRVDVMRDRASGQLYLLEVNTAPGMTSHSLVPKAARQLGIDFEE-LVW 311

Query: 292 MV 293
            V
Sbjct: 312 RV 313


>gi|191167773|ref|ZP_03029580.1| D-alanine--D-alanine ligase B [Escherichia coli B7A]
 gi|193070839|ref|ZP_03051772.1| D-alanine--D-alanine ligase B [Escherichia coli E110019]
 gi|293476752|ref|ZP_06665160.1| D-alanine-D-alanine ligase B [Escherichia coli B088]
 gi|309796082|ref|ZP_07690494.1| D-ala D-ala ligase [Escherichia coli MS 145-7]
 gi|331650989|ref|ZP_08352017.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB)
           (D-Ala-D-Ala ligase B) [Escherichia coli M718]
 gi|190902199|gb|EDV61941.1| D-alanine--D-alanine ligase B [Escherichia coli B7A]
 gi|192955869|gb|EDV86339.1| D-alanine--D-alanine ligase B [Escherichia coli E110019]
 gi|254967073|gb|ACT97575.1| D-alanine-D-alanine ligase B [mixed culture bacterium
           CY_gF1DD01_05]
 gi|254967084|gb|ACT97583.1| D-alanine-D-alanine ligase B [mixed culture bacterium
           CY_gF1DD01_10]
 gi|291321205|gb|EFE60647.1| D-alanine-D-alanine ligase B [Escherichia coli B088]
 gi|308120324|gb|EFO57586.1| D-ala D-ala ligase [Escherichia coli MS 145-7]
 gi|323945721|gb|EGB41769.1| D-alanine-D-alanine ligase [Escherichia coli H120]
 gi|323975744|gb|EGB70840.1| D-alanine-D-alanine ligase [Escherichia coli TW10509]
 gi|331051443|gb|EGI23492.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB)
           (D-Ala-D-Ala ligase B) [Escherichia coli M718]
          Length = 306

 Score =  174 bits (442), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 108/303 (35%), Positives = 164/303 (54%), Gaps = 13/303 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SG A  + L + G     +D        L  +     F  LHG
Sbjct: 5   IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118
             GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK +    G+PV P + + R     
Sbjct: 65  RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124

Query: 119 ---DSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
              D Q      +  P ++KP + GSS+G+  +  + ++  D L+  ++ H +++LIE++
Sbjct: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQ-DALR-LAFQHDEEVLIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L    I  P   FY YE KY S  + +  PA +       +Q L 
Sbjct: 183 LSGPEFTVAILGEEILPSIRIQ-PAGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A   +GC+G  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 242 LKAWTTLGCKGWGRIDVMLDS-DGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300

Query: 292 MVE 294
           ++E
Sbjct: 301 ILE 303


>gi|91209156|ref|YP_539142.1| D-alanine--D-alanine ligase [Escherichia coli UTI89]
 gi|117622378|ref|YP_851291.1| D-alanine--D-alanine ligase [Escherichia coli APEC O1]
 gi|218557032|ref|YP_002389945.1| D-alanine--D-alanine ligase [Escherichia coli S88]
 gi|237704241|ref|ZP_04534722.1| D-alanine-D-alanine ligase B [Escherichia sp. 3_2_53FAA]
 gi|91070730|gb|ABE05611.1| D-alanine--D-alanine ligase B [Escherichia coli UTI89]
 gi|115511502|gb|ABI99576.1| D-alanine--D-alanine ligase B [Escherichia coli APEC O1]
 gi|218363801|emb|CAR01461.1| D-alanine:D-alanine ligase [Escherichia coli S88]
 gi|226902153|gb|EEH88412.1| D-alanine-D-alanine ligase B [Escherichia sp. 3_2_53FAA]
 gi|294490795|gb|ADE89551.1| D-alanine--D-alanine ligase B [Escherichia coli IHE3034]
 gi|307629666|gb|ADN73970.1| D-alanine--D-alanine ligase [Escherichia coli UM146]
 gi|315285162|gb|EFU44607.1| D-ala D-ala ligase [Escherichia coli MS 110-3]
 gi|323950912|gb|EGB46789.1| D-alanine-D-alanine ligase [Escherichia coli H252]
 gi|323955290|gb|EGB51063.1| D-alanine-D-alanine ligase [Escherichia coli H263]
          Length = 306

 Score =  174 bits (442), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 107/303 (35%), Positives = 166/303 (54%), Gaps = 13/303 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SG A  + L + G     +D        L  +     F  LHG
Sbjct: 5   IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117
             GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK +    G+PV P + + R     
Sbjct: 65  RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124

Query: 118 -MDSQHL-----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
            ++ + L     +  P ++KP + GSS+G+  +  + ++  D L+  ++ H +++LIE++
Sbjct: 125 GLNDKQLAEISSLGLPVIVKPSREGSSVGMSKVVAENALQ-DALR-LAFQHDEEVLIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L    I  P   FY YE KY S  + +  PA +       +Q L 
Sbjct: 183 LSGPEFTIAILGEEILPSIRIQ-PAGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A   +GC+G  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 242 LKAWTTLGCKGWGRIDVMLDS-DGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300

Query: 292 MVE 294
           ++E
Sbjct: 301 ILE 303


>gi|323964812|gb|EGB60279.1| D-alanine-D-alanine ligase [Escherichia coli M863]
 gi|327255070|gb|EGE66673.1| D-alanine--D-alanine ligase B [Escherichia coli STEC_7v]
          Length = 306

 Score =  174 bits (442), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 108/303 (35%), Positives = 164/303 (54%), Gaps = 13/303 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SG A  + L + G     +D        L  +     F  LHG
Sbjct: 5   IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118
             GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK +    G+PV P + + R     
Sbjct: 65  RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124

Query: 119 ---DSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
              D Q      +  P ++KP + GSS+G+  +  + ++  D L+  ++ H +++LIE++
Sbjct: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQ-DALR-LAFQHDEEVLIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L    I  P   FY YE KY S  + +  PA +       +Q L 
Sbjct: 183 LSGPEFTVAILGEEILPSIRIQ-PAGTFYDYEAKYLSDETQYFCPAGLDASQEANLQALV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A   +GC+G  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 242 LKAWTTLGCKGWGRIDVMLDS-DGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300

Query: 292 MVE 294
           ++E
Sbjct: 301 ILE 303


>gi|34499796|ref|NP_904011.1| D-alanine--D-alanine ligase [Chromobacterium violaceum ATCC 12472]
 gi|39930963|sp|Q7NQ01|DDLB_CHRVO RecName: Full=D-alanine--D-alanine ligase B; AltName:
           Full=D-Ala-D-Ala ligase B; AltName: Full=D-alanylalanine
           synthetase B
 gi|34105646|gb|AAQ62000.1| D-alanine--D-alanine ligase [Chromobacterium violaceum ATCC 12472]
          Length = 303

 Score =  174 bits (442), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 104/293 (35%), Positives = 162/293 (55%), Gaps = 8/293 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSEREVSL SG    SAL   G      D        L     D  FN+LHG
Sbjct: 7   VAVLMGGSSSEREVSLMSGAGVLSALRSKGVDAHGFDPSEKPLSALKEEGFDCVFNILHG 66

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT-MD 119
            FGEDG +Q  LE L +PYT  G++ASA++MDK R+K +    G+P+    L++  +  D
Sbjct: 67  PFGEDGTLQGALEALGMPYTGCGVMASAIAMDKWRTKLLWKGAGLPIPAFELLDENSDFD 126

Query: 120 S-QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI-EQYVDGIEL 177
           + +  +  P  +KP   GSS+G+  +K+   +     ++  +   D+++I EQ++ G E 
Sbjct: 127 AIERQLGLPIFVKPSTEGSSIGVTKVKQPGELRAAFEEARKY---DKVVIAEQFIGGGEY 183

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC V+G+ +    +I  P +++Y Y+ KY   ++ +  P+ +  ++    + LA  A + 
Sbjct: 184 TCAVIGETAYPTIKIE-PATEYYDYQAKYFRDDTVYRCPSGLAPEVEARARELALKAFKV 242

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +GCRG SR DFL D  + +++ LE N  PGMT  S+ P  A   G ++ +L L
Sbjct: 243 LGCRGWSRVDFLMDE-AGEIYLLEANTSPGMTSHSLVPMAARAEGIAYEDLCL 294


>gi|82542696|ref|YP_406643.1| D-alanine--D-alanine ligase [Shigella boydii Sb227]
 gi|187730657|ref|YP_001878902.1| D-alanine--D-alanine ligase [Shigella boydii CDC 3083-94]
 gi|81244107|gb|ABB64815.1| D-alanine-D-alanine ligase B [Shigella boydii Sb227]
 gi|187427649|gb|ACD06923.1| D-alanine--D-alanine ligase B [Shigella boydii CDC 3083-94]
 gi|320172817|gb|EFW48049.1| D-alanine--D-alanine ligase [Shigella dysenteriae CDC 74-1112]
 gi|320183621|gb|EFW58464.1| D-alanine--D-alanine ligase [Shigella flexneri CDC 796-83]
 gi|332098881|gb|EGJ03832.1| D-alanine--D-alanine ligase B [Shigella boydii 3594-74]
          Length = 306

 Score =  174 bits (442), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 108/303 (35%), Positives = 164/303 (54%), Gaps = 13/303 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SG A  + L + G     +D        L  +     F  LHG
Sbjct: 5   IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118
             GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK +    G+PV P + + R     
Sbjct: 65  RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124

Query: 119 ---DSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
              D Q      +  P ++KP + GSS+G+  +  + ++  D L+  ++ H +++LIE++
Sbjct: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQ-DALR-LAFQHDEEVLIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L    I  P   FY YE KY S  + +  PA +       +Q L 
Sbjct: 183 LSGPEFTVAILGEEILPSIRIQ-PSGTFYDYEAKYLSDETQYFCPAGLDASQEANLQALV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A   +GC+G  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 242 LKAWTTLGCKGWGRIDVMLDS-DGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300

Query: 292 MVE 294
           ++E
Sbjct: 301 ILE 303


>gi|157155564|ref|YP_001461262.1| D-alanine--D-alanine ligase [Escherichia coli E24377A]
 gi|157077594|gb|ABV17302.1| D-alanine--D-alanine ligase B [Escherichia coli E24377A]
          Length = 306

 Score =  174 bits (442), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 108/303 (35%), Positives = 164/303 (54%), Gaps = 13/303 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SG A  + L + G     +D        L  +     F  LHG
Sbjct: 5   IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118
             GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK +    G+PV P + + R     
Sbjct: 65  RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVSPWVALTRAEFEK 124

Query: 119 ---DSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
              D Q      +  P ++KP + GSS+G+  +  + ++  D L+  ++ H +++LIE++
Sbjct: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQ-DALR-LAFQHDEEVLIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L    I  P   FY YE KY S  + +  PA +       +Q L 
Sbjct: 183 LSGPEFTVAILGEEILPSIRIQ-PAGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A   +GC+G  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 242 LKAWTTLGCKGWGRIDVMLDS-DGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300

Query: 292 MVE 294
           ++E
Sbjct: 301 ILE 303


>gi|311104003|ref|YP_003976856.1| D-alanine--D-alanine ligase B [Achromobacter xylosoxidans A8]
 gi|310758692|gb|ADP14141.1| D-alanine--D-alanine ligase B [Achromobacter xylosoxidans A8]
          Length = 316

 Score =  174 bits (441), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 116/307 (37%), Positives = 167/307 (54%), Gaps = 16/307 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VL GG S+EREVSL SG     AL  AG      D        LA    D  F  LHG
Sbjct: 8   VGVLYGGRSAEREVSLMSGAGVHQALLSAGVDAHLFDTGERSLSELAAQGFDRVFIALHG 67

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG +Q  LELL IPYT SG LASAL+MDK  +K+V    G+P     L++    D+
Sbjct: 68  RYGEDGTIQGALELLGIPYTGSGPLASALAMDKTMTKRVWLQHGLPTPDFELLD---ADT 124

Query: 121 QHLISP-----PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175
           +  + P     P +IKP   GS++GI  +     +      ++ ++   ++L EQ++ G 
Sbjct: 125 ELRLVPDRLSLPLIIKPPHEGSTVGITKVVGYSDMKEAYAAAARFDA--EVLAEQFITGR 182

Query: 176 ELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           ELT  V+G      +L V EIA P  + Y YE KY S ++ +  PA +P ++  EV  +A
Sbjct: 183 ELTVAVLGGGKTARALPVIEIAAPGGN-YDYEHKYFSDDTQYFCPATLPPEVAAEVAEIA 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A+QA+GC G  R+DF+ D  +R  + LE+N  PGMT  S+ P  A   G S+ +L + 
Sbjct: 242 VQAYQALGCEGWGRADFILDRDNRP-WLLEMNTSPGMTSHSLVPMAAKAVGISYADLCVA 300

Query: 292 MVEDASC 298
           ++ +A+C
Sbjct: 301 ILSEAAC 307


>gi|284008382|emb|CBA74791.1| D-alanine--D-alanine ligase [Arsenophonus nasoniae]
          Length = 300

 Score =  174 bits (441), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 107/302 (35%), Positives = 170/302 (56%), Gaps = 15/302 (4%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62
           +L+GG S+EREVSL SG A  + L DAG     +D+     + L     +  F  LHG  
Sbjct: 1   MLLGGNSAEREVSLQSGDAVVNGLRDAGIAAYPVDIKDFAVIKLKEAGYNKVFIALHGRG 60

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--FTMDS 120
           GEDG VQ +LE L +PYT SG+LAS+LSMDK+R+KQ+ +  G+P+ P I +++    M S
Sbjct: 61  GEDGTVQGVLEFLGLPYTGSGVLASSLSMDKLRTKQLWAGIGLPIAPYIALDKQQLAMMS 120

Query: 121 QHL-------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
             +       +  P ++KP   GSS+G+  +     + + L    ++ +   +LIE++++
Sbjct: 121 DEMLFESVCHLGLPLIVKPSLEGSSVGMSKVTTLSELRIAL--EFAFRYDKDVLIEKWLN 178

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           G E T  ++G+  L    I  P   FY Y+ KY S  + +  P+ +  +  +++ +LA  
Sbjct: 179 GPEYTVAIVGEQVLPSIRIQ-PVGVFYDYDAKYLSNETQYFCPSGLKAEEEEQLNKLALA 237

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           A++A+GC G  R D + D  +  VF+ LEIN  PGMT  S+ P  A  AG +F +L+  +
Sbjct: 238 AYKAVGCAGWGRVDVMRD--NDGVFYLLEINTSPGMTGHSLVPMAAKQAGMTFSQLVKKI 295

Query: 293 VE 294
           +E
Sbjct: 296 LE 297


>gi|163782057|ref|ZP_02177056.1| D-alanine:D-alanine ligase [Hydrogenivirga sp. 128-5-R1-1]
 gi|159882589|gb|EDP76094.1| D-alanine:D-alanine ligase [Hydrogenivirga sp. 128-5-R1-1]
          Length = 288

 Score =  174 bits (441), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 103/289 (35%), Positives = 165/289 (57%), Gaps = 8/289 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VLMGG SSERE+SL +G+A + AL+D G +V ++D+   +   L  +KPD  F  LHG
Sbjct: 3   IVVLMGGKSSEREISLKTGRAVSRALKDMGHEVHELDLTPEIACELLRIKPDKVFIALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG +Q +L++L IPYT +G+L SA++MDK  +K+++SS G+P  P   V R   + 
Sbjct: 63  PYGEDGRIQGLLDILGIPYTGAGVLGSAVAMDKEITKRLLSSEGIPTPPWRCVRRG--EE 120

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
                 P V+KP   GSS+G+ V+  +    L       +   D++L+E +++G ++T  
Sbjct: 121 PVWRDFPAVVKPADQGSSVGLSVVHSEAE--LGKAVKELFELTDKVLVESFIEGRDMTVA 178

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           ++   +L V EI  P    Y YE KY+   + +    +  L   + +Q  A   ++ +G 
Sbjct: 179 ILKGKALPVIEIK-PIKGIYDYESKYTRGKTEYTFLEEGELS--ERLQDTALRVNELLGL 235

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           + ++R DF  D      + LE+N  PGMT +S+FP     AG SF+E+L
Sbjct: 236 KDMARVDFRVDGEGNP-YVLEVNTVPGMTELSLFPMACEKAGMSFKEML 283


>gi|54309150|ref|YP_130170.1| D-alanine-D-alanine ligase B [Photobacterium profundum SS9]
 gi|46913582|emb|CAG20368.1| hypothetical D-alanine-D-alanine ligase B [Photobacterium profundum
           SS9]
          Length = 308

 Score =  174 bits (441), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 107/303 (35%), Positives = 173/303 (57%), Gaps = 14/303 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VL+GG SSER VSL SG+    A+E  G +   ID       ++   K D  F  LHG
Sbjct: 7   IGVLLGGESSERSVSLKSGECVVKAIESLGHEAISIDPKHIDVTLMGFFKLDKVFIALHG 66

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--M 118
             GE G VQA+L+LL+IPYT SG LASA+S++K+ SK++  S  +     + +++     
Sbjct: 67  GIGESGHVQALLDLLKIPYTGSGTLASAMSLNKLNSKEIWQSNSLKSADWVTLHKHAPIE 126

Query: 119 DSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS--SSWNHGDQLLIEQYVD 173
           D +  +S    P V+KP+  G S+G+  +  +     DLL++  +++ + D +LIE ++ 
Sbjct: 127 DIKAQLSSVVCPVVVKPISQGCSIGVSKVDNNA----DLLEAVITAFEYDDDILIESFIA 182

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           G E TC V+    L + +I   +  F+ Y+ K+ S ++T+  P+ +  +  +++Q LA  
Sbjct: 183 GREYTCAVLNGKPLPIVQIRSEQ--FFDYDAKFGSQSATYHCPSDLTSEQERDMQALALN 240

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           A+ A+GCRG  R D + D  S  VF +E+N  PGMT  S+FP  A  AG SF +++  ++
Sbjct: 241 AYNALGCRGWGRVDTILDE-SGDVFLIEMNTIPGMTTRSVFPMAAKEAGLSFGQVISSLL 299

Query: 294 EDA 296
           + A
Sbjct: 300 DSA 302


>gi|330895225|gb|EGH27563.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. japonica str.
           M301072PT]
          Length = 319

 Score =  174 bits (441), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 116/303 (38%), Positives = 171/303 (56%), Gaps = 8/303 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+ER VSL+SG A   AL DAG     IDV       L   K D AF VLHG
Sbjct: 21  VAVLFGGKSAERAVSLNSGNAVLGALLDAGVDAFGIDVGDDFLQRLVSEKIDRAFIVLHG 80

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV-CPSILVNRF-TM 118
             GEDG +Q +LE LEIPYT SG+LASAL+MDK+R+KQV  S G+     ++L N    +
Sbjct: 81  RGGEDGTMQGLLECLEIPYTGSGVLASALAMDKLRTKQVWQSLGLATPLHAVLENESDCI 140

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   +  P ++KP   GSS+G+  +     +      +S+++   Q+L+EQ++ G E T
Sbjct: 141 CAATELGLPLIVKPAHEGSSIGMAKVNSVDELIAAWKAASTYD--SQVLVEQWIQGPEFT 198

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +    L    +  P S FY Y+ KY + ++ + +P  +     +E+++LA  A +AI
Sbjct: 199 VASLRGQVLPPIGLGTPHS-FYDYDAKYLASDTQYRIPCGLGDAQEQELKQLAARACEAI 257

Query: 239 GCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           G  G +R+D + D   +  FW LE+N  PGMT  S+ P  A  AG  F++L+L ++ D+ 
Sbjct: 258 GIAGWARTDVMQDAQGK--FWLLEVNTVPGMTDHSLVPMAARAAGLDFQQLVLAILADSV 315

Query: 298 CLR 300
             R
Sbjct: 316 QAR 318


>gi|194434413|ref|ZP_03066675.1| D-alanine--D-alanine ligase B [Shigella dysenteriae 1012]
 gi|194417329|gb|EDX33436.1| D-alanine--D-alanine ligase B [Shigella dysenteriae 1012]
 gi|332098163|gb|EGJ03136.1| D-alanine--D-alanine ligase B [Shigella dysenteriae 155-74]
          Length = 306

 Score =  174 bits (441), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 107/303 (35%), Positives = 164/303 (54%), Gaps = 13/303 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SG A  + L + G     +D        L  +     F  LHG
Sbjct: 5   IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118
             GEDG +Q +LEL+ +PYT SG++ASALS+DK+RSK +    G+PV P + + R     
Sbjct: 65  RGGEDGTLQGMLELMSLPYTGSGVMASALSIDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124

Query: 119 ---DSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
              D Q      +  P ++KP + GSS+G+  +  + ++  D L+  ++ H +++LIE++
Sbjct: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMTKVVAENALQ-DALR-LAFQHDEEVLIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L    I  P   FY YE KY S  + +  PA +       +Q L 
Sbjct: 183 LSGPEFTVAILGEEILPSIRIQ-PAGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A   +GC+G  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 242 LKAWMTLGCKGWGRIDVMLDS-DGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300

Query: 292 MVE 294
           ++E
Sbjct: 301 ILE 303


>gi|330964059|gb|EGH64319.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. actinidiae
           str. M302091]
          Length = 319

 Score =  174 bits (441), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 115/303 (37%), Positives = 170/303 (56%), Gaps = 8/303 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL+SG A   AL DAG     IDV       L   K D AF VLHG
Sbjct: 21  VAVLFGGKSAEREVSLNSGHAVLKALLDAGVDAFGIDVGDDFLQRLVSEKIDRAFIVLHG 80

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV--PVCPSILVNRFTM 118
             GEDG +Q +LE LEIPYT SG+LASAL+MDK+R+KQV  S G+  P+   +      +
Sbjct: 81  RGGEDGTMQGLLECLEIPYTGSGVLASALAMDKLRTKQVWQSLGLATPLHAVLENENDCI 140

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   +  P ++KP   GSS+G+  +     +      +S+++   Q+L+EQ++ G E T
Sbjct: 141 CAATELGFPLIVKPAHEGSSIGMAKVNSVDELIAAWKAASTYD--SQVLVEQWIQGPEFT 198

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +    L    +  P S FY Y+ KY + ++ + +P  +     +++++LA  A  AI
Sbjct: 199 VASLRGQVLPPIGLGTPHS-FYDYDAKYLASDTQYRIPCGLDDAQEQQLKQLAARACDAI 257

Query: 239 GCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           G  G +R+D + D   +  FW LE+N  PGMT  S+ P  A  AG  F++L+L ++ D+ 
Sbjct: 258 GIAGWARTDVMQDAEGK--FWLLEVNTVPGMTDHSLVPMAARAAGLDFQQLVLAILADSV 315

Query: 298 CLR 300
             R
Sbjct: 316 QAR 318


>gi|161504748|ref|YP_001571860.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. arizonae
           serovar 62:z4,z23:-- str. RSK2980]
 gi|160866095|gb|ABX22718.1| hypothetical protein SARI_02871 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 306

 Score =  174 bits (441), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 109/303 (35%), Positives = 166/303 (54%), Gaps = 13/303 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL SG A  + L + G     +D        L  +    AF  LHG
Sbjct: 5   IAVLLGGASAEREVSLESGAAVLAGLREGGIDAHPVDPKEVDVAQLKAMGFQKAFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR----- 115
             GEDG +Q +LELL +PYT SG++ASALSMDK+RSK +    G+ V P   + R     
Sbjct: 65  RGGEDGTLQGMLELLGLPYTGSGVMASALSMDKLRSKLLWQGAGLLVAPWFALTRAGFEK 124

Query: 116 -FTMDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
             + + +  IS    P ++KP + GSS+G+  + ++ ++   L  + ++ H D++LIE++
Sbjct: 125 GLSEEQKARISALGLPLIVKPGREGSSVGMTKVVEENALQGAL--ALAFQHDDEVLIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L    I  P   FY YE KY S  + +  PA +       +Q L 
Sbjct: 183 LCGPEFTVAILGEEILPSIRIQ-PAGTFYDYEAKYLSDETQYFCPAGLEASQEAALQLLV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A +A+GC+G  R D + +    + + LE N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 242 LQAWKALGCKGWGRIDVMLNS-DGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300

Query: 292 MVE 294
           ++E
Sbjct: 301 ILE 303


>gi|330981214|gb|EGH79317.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. aptata str.
           DSM 50252]
          Length = 319

 Score =  174 bits (441), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 116/303 (38%), Positives = 172/303 (56%), Gaps = 8/303 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+ER VSL+SG A  SAL +AG     IDV       L   K D AF VLHG
Sbjct: 21  VAVLFGGKSAERAVSLNSGNAVLSALLEAGVDAFGIDVGDDFLQRLVSEKIDRAFIVLHG 80

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV-CPSILVNRF-TM 118
             GEDG +Q +LE LEIPYT SG+LASAL+MDK+R+KQV  S G+     ++L N    +
Sbjct: 81  RGGEDGTMQGLLECLEIPYTGSGVLASALAMDKLRTKQVWQSLGLATPLHAVLENESDCI 140

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   +  P ++KP   GSS+G+  +     +      +S+++   Q+L+EQ++ G E T
Sbjct: 141 CAATELGLPLIVKPAHEGSSIGMAKVNSVDELIAAWKAASTYD--SQVLVEQWIQGPEFT 198

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +    L    +  P S FY Y+ KY + ++ + +P  +     +E+++LA  A +AI
Sbjct: 199 VASLRGQVLPPIGLGTPHS-FYDYDAKYLASDTQYRIPCGLGDAQEQELKQLAARACEAI 257

Query: 239 GCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           G  G +R+D + D   +  FW LE+N  PGMT  S+ P  A  AG  F++L+L ++ D+ 
Sbjct: 258 GIAGWARTDVMQDAQGK--FWLLEVNTVPGMTDHSLVPMAARAAGLDFQQLVLAILADSV 315

Query: 298 CLR 300
             R
Sbjct: 316 QAR 318


>gi|121595959|ref|YP_987855.1| D-alanine--D-alanine ligase [Acidovorax sp. JS42]
 gi|190359106|sp|A1WC04|DDL_ACISJ RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|120608039|gb|ABM43779.1| D-alanine--D-alanine ligase [Acidovorax sp. JS42]
          Length = 332

 Score =  174 bits (441), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 111/310 (35%), Positives = 168/310 (54%), Gaps = 23/310 (7%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP---DLAFNV 57
           +AVLMGG S+EREVSL SG     AL   G      D   S    L+ LK       F  
Sbjct: 16  VAVLMGGTSAEREVSLMSGGGVLQALRSRGVDAHAFDPAHSD---LSELKAHGYSRCFIA 72

Query: 58  LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117
           LHG  GEDG VQ  LELL IPYT  G++AS+++MDK+ +K++  + G+P     LV+   
Sbjct: 73  LHGRHGEDGTVQGALELLGIPYTGPGVMASSIAMDKIMTKRIWRADGLPTPDWRLVSSSA 132

Query: 118 MDSQHL--ISPPYVIKPLKGGSSLGIIVIKK----DQSIPLDLLQSSSWNHGDQLLIEQY 171
             +Q    +  P ++KP + GS++G+  +      +Q+  L      +  H  ++L EQ+
Sbjct: 133 ETAQAFQELGAPMIVKPSREGSTIGLTKVTSLGQCEQAYRL------AAQHDPEVLCEQF 186

Query: 172 VDGIELTCGVMGDAS----LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227
           +DG E TC ++G  +    L V  I  P+ + Y Y+ KY +  + +  P+ +P    +E+
Sbjct: 187 IDGDETTCPILGQGTEARALPVIRIEAPQGN-YDYQNKYFTDVTQYHCPSGLPEAEEREI 245

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287
           QR+   A++ +GCRG +R+D +     RK F LEIN  PGMT  S+ P  A  +G S+ +
Sbjct: 246 QRIVVQAYRTLGCRGWARADIMIRASDRKPFLLEINTSPGMTGHSLVPMSANASGISYPD 305

Query: 288 LLLWMVEDAS 297
           L L ++  AS
Sbjct: 306 LCLRILASAS 315


>gi|170720132|ref|YP_001747820.1| D-alanine--D-alanine ligase [Pseudomonas putida W619]
 gi|169758135|gb|ACA71451.1| D-alanine--D-alanine ligase [Pseudomonas putida W619]
          Length = 318

 Score =  174 bits (441), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 117/304 (38%), Positives = 165/304 (54%), Gaps = 10/304 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL SG A   AL  AG  V  IDV   +   L   K D AF +LHG
Sbjct: 20  VAVLYGGKSAEREVSLKSGAAVIEALSSAGVDVVAIDVGDDLLARLQSEKIDRAFIILHG 79

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119
             GEDG +Q +LE L IPYT SGILASAL+MDK+R+KQV  S G+P  P   V     D 
Sbjct: 80  RGGEDGSMQGLLECLGIPYTGSGILASALAMDKLRTKQVWQSLGIPT-PRHAVLASEEDC 138

Query: 120 --SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
             +   +  P ++KP   GSS+G+  +  ++ +      ++ ++   Q+L+EQ++ G E 
Sbjct: 139 VVAGTELGFPLIVKPAHEGSSIGMAKVNSERELVAAWQDAAKYD--SQVLVEQWIHGPEF 196

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           T  V+    L    +  P   FY Y+ KY + ++ + +P  +     +E+  L   A  A
Sbjct: 197 TIAVLRGQVLPPIALGTPHV-FYDYDAKYIANDTQYRIPCGLDSAKEQELIDLTARACDA 255

Query: 238 IGCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           IG  G  R D + D   R  FW LE+N  PGMT  S+ P  A  AG  F++L+L ++ D+
Sbjct: 256 IGIEGWGRLDVMQDEQGR--FWLLEVNTAPGMTDHSLVPMAARAAGLDFQQLVLAILADS 313

Query: 297 SCLR 300
              R
Sbjct: 314 VATR 317


>gi|294666421|ref|ZP_06731665.1| D-alanylalanine synthetase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
 gi|292603790|gb|EFF47197.1| D-alanylalanine synthetase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
          Length = 318

 Score =  174 bits (441), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 111/300 (37%), Positives = 165/300 (55%), Gaps = 12/300 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG SSEREVSL+SG     AL   G     +D   ++   L   + D  FNVLHG
Sbjct: 19  VAVLLGGTSSEREVSLNSGSNVLEALRARGVDAQPVDGIAALAKALVAQQFDRVFNVLHG 78

Query: 61  NFG--EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV--PVCPSILVNRF 116
           + G  EDG+VQ ++E   +PYT S +L SALSMDK+R+KQV  S G+  P    +     
Sbjct: 79  HNGGGEDGIVQGLMEAFGVPYTGSDVLGSALSMDKIRTKQVWLSLGLSTPRYARLAAGAS 138

Query: 117 TMD---SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
             D   +   I  P ++KP   GSS+G+  +     +   +  ++ ++    LL+EQ ++
Sbjct: 139 AEDIHAAARQIGLPIIVKPANEGSSVGVSRVFDQAQLEEAVTLAARYDGA--LLMEQLIE 196

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           G ELT  V+GD +L    I VPK  +Y Y  KY + ++ ++ P  +  +   ++++LA  
Sbjct: 197 GDELTVAVLGDTALPSIRI-VPKGQWYDYNAKYIAEDTQYLCPG-LEGEAEAQIRQLALD 254

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           A  A GCRG  R D + D  S +++ LE+N  PGMT  S+ P+ A   G  F E L+W V
Sbjct: 255 AFHAAGCRGWGRVDVMRDGSSGQLYLLEVNTAPGMTSHSLVPKAARQLGIDF-ETLVWRV 313


>gi|289671016|ref|ZP_06492091.1| D-alanine--D-alanine ligase [Xanthomonas campestris pv. musacearum
           NCPPB4381]
          Length = 318

 Score =  174 bits (441), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 110/300 (36%), Positives = 165/300 (55%), Gaps = 12/300 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG SSEREVSL+SG     AL   G     +D   ++   L   + D  FNVLHG
Sbjct: 19  VAVLLGGTSSEREVSLNSGSNVLEALRARGVDAQPVDGIPALAKALVAQQFDRVFNVLHG 78

Query: 61  NFG--EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV-----CPSILV 113
           + G  EDG+VQ ++E   +PYT S +L SALSMDK+R+KQV  S G+         +   
Sbjct: 79  HNGGGEDGIVQGLMEAFGVPYTGSNVLGSALSMDKIRTKQVWLSLGLSTPRYARLAAGAS 138

Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
                 +   I  P ++KP   GSS+G+  +     +   +  ++ ++    LL+EQ ++
Sbjct: 139 AAEIHAAAQQIGLPVIVKPANEGSSVGVSRVFDQAQLEEAVTLAARYDGA--LLMEQLIE 196

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           G ELT  V+GD +L    I VPK  +Y Y  KY + ++ ++ P  +  D   ++++LA  
Sbjct: 197 GDELTVAVLGDTALPSIRI-VPKGQWYDYNAKYLAEDTQYLCPG-LEGDAEAQIRQLALD 254

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           A +A+GCRG  R D + D  S +++ LE+N  PGMT  S+ P+ A   G  F E L+W V
Sbjct: 255 AFRAVGCRGWGRVDVMRDGSSGELYLLEVNTAPGMTSHSLVPKAAHQLGIDF-ETLVWRV 313


>gi|253988596|ref|YP_003039952.1| D-alanine--D-alanine ligase [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253780046|emb|CAQ83207.1| D-alanine--D-alanine ligase [Photorhabdus asymbiotica]
          Length = 306

 Score =  174 bits (440), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 109/304 (35%), Positives = 174/304 (57%), Gaps = 15/304 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL SG A  + L++AG     ID    +   L     +  F  LHG
Sbjct: 5   VAVLLGGTSAEREVSLLSGHAVLAGLKEAGIDAHPIDTKDFLVTQLKEAGFEKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN-----R 115
             GEDG +Q +LE L++PYT SG++AS+LSMDK+R+KQ+    G+ V P + +N     +
Sbjct: 65  RGGEDGTLQGVLEFLQLPYTGSGVMASSLSMDKLRTKQLWQGIGLTVSPYVAINLQQFEQ 124

Query: 116 FT--MDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
           FT     +H+  +  P ++KP   GSS+G+  + +   +   L    ++ +   LLIE++
Sbjct: 125 FTDLQLQEHVADLGLPLIVKPSLEGSSVGMTKVNEISELRGAL--EIAFRYDADLLIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++GD +L    I  P + FY Y+ KY S  + +  P+ +  +  +++  LA
Sbjct: 183 LYGPEYTVAILGDTALPSIRIQ-PAAIFYDYDAKYWSEETKYFCPSGLSDEKEQQLAELA 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             A++++GC G  R D + D  S  VF+ LE+N  PGMT  S+ P  A  AG +F +L++
Sbjct: 242 LKAYKSVGCCGWGRVDIMMD--SDGVFYLLEVNTSPGMTSHSLVPMAARQAGLNFSQLVV 299

Query: 291 WMVE 294
            ++E
Sbjct: 300 KILE 303


>gi|330938055|gb|EGH41817.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. pisi str.
           1704B]
          Length = 319

 Score =  174 bits (440), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 116/303 (38%), Positives = 172/303 (56%), Gaps = 8/303 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+ER VSL+SG A  SAL +AG     IDV       L   K D AF VLHG
Sbjct: 21  VAVLFGGKSAERAVSLNSGNAVLSALLEAGVDAFGIDVGDDFLQRLVSEKIDRAFIVLHG 80

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV-CPSILVNRF-TM 118
             GEDG +Q +LE LEIPYT SG+LASAL+MDK+R+KQV  S G+     ++L N    +
Sbjct: 81  RGGEDGTMQGLLECLEIPYTGSGVLASALAMDKLRTKQVWQSLGLATPLHAVLENESDCI 140

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   +  P ++KP   GSS+G+  +     +      +S+++   Q+L+EQ++ G E T
Sbjct: 141 CAATELGLPLIVKPAHEGSSIGMAKVNSVDELIAAWKAASTYD--SQVLVEQWIQGPEFT 198

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +    L    +  P S FY Y+ KY + ++ + +P  +     +E+++LA  A +AI
Sbjct: 199 VASLRGQVLPPIGLGTPHS-FYDYDAKYLASDTQYRIPCGLGDAQEQELKQLAARACEAI 257

Query: 239 GCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           G  G +R+D + D   +  FW LE+N  PGMT  S+ P  A  AG  F++L+L ++ D+ 
Sbjct: 258 GIAGWARTDVMQDAQGK--FWLLEVNTVPGMTDHSLVPMAARAAGLDFQQLVLAILADSV 315

Query: 298 CLR 300
             R
Sbjct: 316 QAR 318


>gi|289663635|ref|ZP_06485216.1| D-alanine--D-alanine ligase [Xanthomonas campestris pv. vasculorum
           NCPPB702]
          Length = 318

 Score =  174 bits (440), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 110/300 (36%), Positives = 165/300 (55%), Gaps = 12/300 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG SSEREVSL+SG     AL   G     +D   ++   L   + D  FNVLHG
Sbjct: 19  VAVLLGGTSSEREVSLNSGSNVLEALRARGVDAQPVDGIPALAKALVAQQFDRVFNVLHG 78

Query: 61  NFG--EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV-----CPSILV 113
           + G  EDG+VQ ++E   +PYT S +L SALSMDK+R+KQV  S G+         +   
Sbjct: 79  HNGGGEDGIVQGLMEAFGVPYTGSNVLGSALSMDKIRTKQVWLSLGLSTPRYARLAAGAS 138

Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
                 +   I  P ++KP   GSS+G+  +     +   +  ++ ++    LL+EQ ++
Sbjct: 139 AAEIHAAAQQIGLPVIVKPANEGSSVGVSRVFDQAQLEEAVTLAARYDGA--LLMEQLIE 196

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           G ELT  V+GD +L    I VPK  +Y Y  KY + ++ ++ P  +  D   ++++LA  
Sbjct: 197 GDELTVAVLGDTALPSIRI-VPKGQWYDYNAKYLAEDTQYLCPG-LEGDAEAQIRQLALD 254

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           A +A+GCRG  R D + D  S +++ LE+N  PGMT  S+ P+ A   G  F E L+W V
Sbjct: 255 AFRAVGCRGWGRVDVMRDGSSGELYLLEVNAAPGMTSHSLVPKAAHQLGIDF-ETLVWRV 313


>gi|139439868|ref|ZP_01773233.1| Hypothetical protein COLAER_02267 [Collinsella aerofaciens ATCC
           25986]
 gi|133774796|gb|EBA38616.1| Hypothetical protein COLAER_02267 [Collinsella aerofaciens ATCC
           25986]
          Length = 321

 Score =  174 bits (440), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 109/286 (38%), Positives = 165/286 (57%), Gaps = 14/286 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFK-VSQIDVDRSVGLV-LAHLKPDLAFNVL 58
           +AVL GG S+ERE+SL+SGK    AL++AG+  V  ID      +V +A    D+AF  +
Sbjct: 11  VAVLAGGHSAEREISLNSGKNVVVALKEAGYTSVELIDTAADDFMVTMATGGFDVAFIAM 70

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN-RFT 117
           HG  GEDG +Q  +E L IPYT SG+LASA   DK  SK + +  G+P+ P + +     
Sbjct: 71  HGAGGEDGAMQGAMETLGIPYTASGVLASACGADKEVSKLLYAKAGIPIAPGLALEVGDE 130

Query: 118 MDSQHLI---SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
           +D  H++        +KP   GSS GI ++ +   +P  +  + ++ +GD++L+E+ ++G
Sbjct: 131 VDIDHIVEVCGERCFVKPAVNGSSYGISLVHEPSELPAAI--AKAFAYGDKVLVEKCIEG 188

Query: 175 IELTCGVMGD---ASLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            E+T GV G+    +L + EI  P+  +FY  ++KY      H +PA+I  + Y   Q L
Sbjct: 189 TEITVGVYGEDDVRALPIVEIRKPEDCEFYDLDVKYVDPTDIHRIPAQISPENYARAQEL 248

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPE 276
           A  AH+A+GC GISRSDF+          LE N  PGMT  S++P+
Sbjct: 249 ACAAHKALGCLGISRSDFIVS--EDGPVILETNTIPGMTDTSLYPD 292


>gi|226943455|ref|YP_002798528.1| D-alanine--D-alanine ligase [Azotobacter vinelandii DJ]
 gi|226718382|gb|ACO77553.1| D-alanine--D-alanine ligase [Azotobacter vinelandii DJ]
          Length = 315

 Score =  174 bits (440), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 114/300 (38%), Positives = 167/300 (55%), Gaps = 10/300 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+ER VSL SG+A   AL+ AG     IDV   +   L   + D AF VLHG
Sbjct: 17  VAVLFGGKSAERAVSLKSGQAVLEALQSAGVDAFGIDVGDDLLERLGRERIDRAFIVLHG 76

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LE + IPYT SG+LASAL+MDK+R+KQV  S G+P  P   V     D 
Sbjct: 77  RGGEDGSMQGLLECVGIPYTGSGVLASALAMDKLRTKQVWQSLGLPT-PRHAVPTSESDC 135

Query: 121 QHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
           +     +  P ++KP   GSS+G+  +     +    L + S  H  Q+L+EQ++ G E 
Sbjct: 136 RAAARDLGFPLIVKPAHEGSSIGMAKVNDIDELIAAWLSARS--HDPQVLVEQWIQGPEF 193

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           T  ++    L    +  P S FY Y+ KY + ++ + +P  +     +E++ L   A +A
Sbjct: 194 TVALLRGQVLPPIGLGTPHS-FYDYDAKYLASDTQYRIPCGLDSSKEEELKALCARACEA 252

Query: 238 IGCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +G +G +R D + D   R  FW LE+N  PGMT  S+ P  A  AG  F++L+L ++ D+
Sbjct: 253 VGVQGWARVDVMQDAEGR--FWLLEVNTVPGMTDHSLVPMAARAAGLDFQQLVLAVLADS 310


>gi|319791670|ref|YP_004153310.1| D-alanine/D-alanine ligase [Variovorax paradoxus EPS]
 gi|315594133|gb|ADU35199.1| D-alanine/D-alanine ligase [Variovorax paradoxus EPS]
          Length = 323

 Score =  174 bits (440), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 110/308 (35%), Positives = 165/308 (53%), Gaps = 15/308 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVS+ SG     AL   G      D      + L        F VLHG
Sbjct: 12  VAVLFGGSSAEREVSMMSGTGVLEALRSRGVDAHAFDPSERDLVELKREGFARCFVVLHG 71

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG VQ  LELL IPYT SG++AS+++MDK+ +K++  + G+P  P  +   F   S
Sbjct: 72  RHGEDGTVQGALELLGIPYTGSGVMASSVAMDKVMTKRIWQADGLPT-PKYVRLAFDQQS 130

Query: 121 --QHLISP-----PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
             Q ++ P     P ++KP + GSS+G+  ++    +   +  S+ ++    +L E++++
Sbjct: 131 REQIMVVPDVLGLPLIVKPPREGSSIGVTKVEGYSQMQDAVTLSAKYDA--DVLCEEFIE 188

Query: 174 GIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           G E+TC V+G      +L V  IA P+   Y Y+ KY +    +  P+ +P D   E+QR
Sbjct: 189 GEEVTCAVLGQGLDARALPVVRIAAPEG-AYDYQNKYFTDVVQYKCPSGLPADEEHEIQR 247

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           +   A+  +GCRG  R+D +     RK F LE+N  PGMT  S+ P  A  AG  + EL 
Sbjct: 248 ITLAAYHTLGCRGWGRADVMIRASDRKPFLLEMNTSPGMTSHSLVPMSARAAGIPYEELC 307

Query: 290 LWMVEDAS 297
           L ++  AS
Sbjct: 308 LRVLASAS 315


>gi|320179654|gb|EFW54603.1| D-alanine--D-alanine ligase B [Shigella boydii ATCC 9905]
          Length = 306

 Score =  174 bits (440), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 107/303 (35%), Positives = 164/303 (54%), Gaps = 13/303 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SG A  + L + G     +D        L  +     F  LHG
Sbjct: 5   IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118
             GEDG +Q +LEL+ +PYT SG++ASALS+DK+RSK +    G+PV P + + R     
Sbjct: 65  RGGEDGTLQGMLELMGLPYTGSGVMASALSIDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124

Query: 119 ---DSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
              D Q      +  P ++KP + GSS+G+  +  + ++  D L+  ++ H +++LIE++
Sbjct: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMTKVVAENALQ-DALR-LAFQHDEEVLIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L    I  P   FY YE KY S  + +  PA +       +Q L 
Sbjct: 183 LSGPEFTVAILGEEILPSIRIQ-PAGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A   +GC+G  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 242 LKAWTTLGCKGWGRIDVMLDS-DGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300

Query: 292 MVE 294
           ++E
Sbjct: 301 ILE 303


>gi|255066168|ref|ZP_05318023.1| D-alanine--D-alanine ligase B [Neisseria sicca ATCC 29256]
 gi|255049713|gb|EET45177.1| D-alanine--D-alanine ligase B [Neisseria sicca ATCC 29256]
          Length = 304

 Score =  174 bits (440), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 119/309 (38%), Positives = 169/309 (54%), Gaps = 27/309 (8%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD---LAFNV 57
           +AVLMGG SSERE+SL SG A  +AL+  G      D   +    LA LK      AFN+
Sbjct: 7   VAVLMGGFSSEREISLDSGAAILNALKSKGIDAHAFDPKETP---LAELKTQGFQTAFNI 63

Query: 58  LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---- 113
           LHG +GEDG VQ  LELL IPYT SG+ ASA+ MDK R K +  + G+PV P   V    
Sbjct: 64  LHGTYGEDGAVQGALELLGIPYTGSGVAASAIGMDKYRCKLIWQALGLPV-PEFAVLHED 122

Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP-----LDLLQSSSWNHGDQLLI 168
           + F    Q L  P +V KP   GSS+G++ +K+   +      L  LQ        +++ 
Sbjct: 123 SDFDAVEQQLGLPMFV-KPAAEGSSVGVVKVKEKGRLKSVYEELKHLQG-------EIIA 174

Query: 169 EQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           E+++ G E +C V+    L    I +P ++FY YE KY+  ++ +  P++   +  + + 
Sbjct: 175 ERFIGGGEYSCPVLNGKGLPSIHI-IPATEFYDYEAKYNRDDTVYQCPSEDLSEAEENLM 233

Query: 229 R-LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287
           R LA    QAIG  G  R DFL D    K++ LEIN  PGMT  S+ P+ AA+ G  F +
Sbjct: 234 RSLAVRGAQAIGAEGCVRVDFLKD-TDGKLYLLEINTLPGMTSHSLVPKSAAHTGVDFAD 292

Query: 288 LLLWMVEDA 296
           L + +++ A
Sbjct: 293 LCIEILKTA 301


>gi|222112147|ref|YP_002554411.1| d-alanine--d-alanine ligase [Acidovorax ebreus TPSY]
 gi|254767729|sp|B9MFR0|DDL_ACIET RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|221731591|gb|ACM34411.1| D-alanine/D-alanine ligase [Acidovorax ebreus TPSY]
          Length = 332

 Score =  173 bits (439), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 111/310 (35%), Positives = 168/310 (54%), Gaps = 23/310 (7%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP---DLAFNV 57
           +AVLMGG S+EREVSL SG     AL   G      D   S    L+ LK       F  
Sbjct: 16  VAVLMGGTSAEREVSLMSGGGVLQALRSRGVDAHAFDPAHSD---LSELKAHGYSRCFIA 72

Query: 58  LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117
           LHG  GEDG VQ  LELL IPYT  G++AS+++MDK+ +K++  + G+P     LV+   
Sbjct: 73  LHGRHGEDGTVQGALELLGIPYTGPGVMASSIAMDKIMTKRIWRADGLPTPDWRLVSSSA 132

Query: 118 MDSQHL--ISPPYVIKPLKGGSSLGIIVIKK----DQSIPLDLLQSSSWNHGDQLLIEQY 171
             +Q    +  P ++KP + GS++G+  +      +Q+  L      +  H  ++L EQ+
Sbjct: 133 ETAQAFQELGAPMIVKPSREGSTIGLTKVTSLGQCEQAYRL------AAQHDPEVLCEQF 186

Query: 172 VDGIELTCGVMGDAS----LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227
           +DG E TC ++G  +    L V  I  P+ + Y Y+ KY +  + +  P+ +P    +E+
Sbjct: 187 IDGDETTCPILGQGAEARALPVIRIEAPQGN-YDYQNKYFTDVTQYHCPSGLPEAEEREI 245

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287
           QR+   A++ +GCRG +R+D +     RK F LEIN  PGMT  S+ P  A  +G S+ +
Sbjct: 246 QRIVVQAYRTLGCRGWARADIMIRASDRKPFLLEINTSPGMTGHSLVPMSANASGISYPD 305

Query: 288 LLLWMVEDAS 297
           L L ++  AS
Sbjct: 306 LCLRILASAS 315


>gi|26246025|ref|NP_752064.1| D-alanine--D-alanine ligase [Escherichia coli CFT073]
 gi|227885003|ref|ZP_04002808.1| D-alanine--D-alanine ligase [Escherichia coli 83972]
 gi|300981129|ref|ZP_07175375.1| D-ala D-ala ligase [Escherichia coli MS 45-1]
 gi|301048484|ref|ZP_07195509.1| D-ala D-ala ligase [Escherichia coli MS 185-1]
 gi|29336713|sp|Q8FL63|DDLB_ECOL6 RecName: Full=D-alanine--D-alanine ligase B; AltName:
           Full=D-Ala-D-Ala ligase B; AltName: Full=D-alanylalanine
           synthetase B
 gi|26106422|gb|AAN78608.1|AE016755_108 D-alanine--D-alanine ligase B [Escherichia coli CFT073]
 gi|227837832|gb|EEJ48298.1| D-alanine--D-alanine ligase [Escherichia coli 83972]
 gi|300299670|gb|EFJ56055.1| D-ala D-ala ligase [Escherichia coli MS 185-1]
 gi|300409031|gb|EFJ92569.1| D-ala D-ala ligase [Escherichia coli MS 45-1]
 gi|307551936|gb|ADN44711.1| D-alanine--D-alanine ligase B [Escherichia coli ABU 83972]
 gi|315294713|gb|EFU54056.1| D-ala D-ala ligase [Escherichia coli MS 153-1]
          Length = 306

 Score =  173 bits (439), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 107/303 (35%), Positives = 166/303 (54%), Gaps = 13/303 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SG A  + L + G     +D        L  +     F  LHG
Sbjct: 5   IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117
             GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK +    G+PV P + + R     
Sbjct: 65  RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124

Query: 118 -MDSQHL-----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
            ++ + L     +  P ++KP + GSS+G+  +  + ++  D L+  ++ H +++LIE++
Sbjct: 125 GLNDKQLAEISSLGLPVIVKPSREGSSVGMSKVVAENALQ-DALR-LAFQHDEEVLIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L    I  P   FY YE KY S  + +  PA +       +Q L 
Sbjct: 183 LSGPEFTVAILGEEILPSIRIQ-PAGTFYDYEAKYLSDETQYFCPAGLEALQEANLQALV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A   +GC+G  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 242 LKAWTTLGCKGWGRIDVMLDS-DGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300

Query: 292 MVE 294
           ++E
Sbjct: 301 ILE 303


>gi|157831486|pdb|1IOW|A Chain A, Complex Of Y216f D-Ala:d-Ala Ligase With Adp And A
           Phosphoryl Phosphinate
          Length = 306

 Score =  173 bits (439), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 107/303 (35%), Positives = 164/303 (54%), Gaps = 13/303 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SG A  + L + G     +D        L  +     F  LHG
Sbjct: 5   IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118
             GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK +    G+PV P + + R     
Sbjct: 65  RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124

Query: 119 ---DSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
              D Q      +  P ++KP + GSS+G+  +  + ++  D L+  ++ H +++LIE++
Sbjct: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQ-DALR-LAFQHDEEVLIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L    I  P   FY YE K+ S  + +  PA +       +Q L 
Sbjct: 183 LSGPEFTVAILGEEILPSIRIQ-PSGTFYDYEAKFLSDETQYFCPAGLEASQEANLQALV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A   +GC+G  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 242 LKAWTTLGCKGWGRIDVMLDS-DGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300

Query: 292 MVE 294
           ++E
Sbjct: 301 ILE 303


>gi|110640305|ref|YP_668033.1| D-alanine--D-alanine ligase [Escherichia coli 536]
 gi|191174586|ref|ZP_03036080.1| D-alanine--D-alanine ligase B [Escherichia coli F11]
 gi|300984514|ref|ZP_07177006.1| D-ala D-ala ligase [Escherichia coli MS 200-1]
 gi|110341897|gb|ABG68134.1| D-alanine-D-alanine ligase B [Escherichia coli 536]
 gi|190905133|gb|EDV64778.1| D-alanine--D-alanine ligase B [Escherichia coli F11]
 gi|300306683|gb|EFJ61203.1| D-ala D-ala ligase [Escherichia coli MS 200-1]
 gi|324012255|gb|EGB81474.1| D-ala D-ala ligase [Escherichia coli MS 60-1]
          Length = 306

 Score =  173 bits (439), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 108/303 (35%), Positives = 164/303 (54%), Gaps = 13/303 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SG A  + L + G     +D        L  +     F  LHG
Sbjct: 5   IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118
             GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK +    G+PV P + + R     
Sbjct: 65  RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124

Query: 119 ---DSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
              D Q      +  P ++KP + GSS+G+  +  + ++  D L+  ++ H +++LIE++
Sbjct: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQ-DALR-LAFQHDEEVLIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L    I  P   FY YE KY S  + +  PA +       +Q L 
Sbjct: 183 LSGPEFTVAILGEEILPSIRIQ-PAGTFYDYEAKYLSDETQYFCPAGLEALQEANLQALV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A   +GC+G  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 242 LKAWTTLGCKGWGRIDVMLDS-DGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300

Query: 292 MVE 294
           ++E
Sbjct: 301 ILE 303


>gi|330973385|gb|EGH73451.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. aceris str.
           M302273PT]
          Length = 319

 Score =  173 bits (439), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 115/303 (37%), Positives = 171/303 (56%), Gaps = 8/303 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+ER VSL+SG A   AL +AG     IDV       L   K D AF VLHG
Sbjct: 21  VAVLFGGKSAERAVSLNSGNAVLGALLEAGVDAFGIDVGDDFLQRLVSEKIDRAFIVLHG 80

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV-CPSILVNRF-TM 118
             GEDG +Q +LE LEIPYT SG+LASAL+MDK+R+KQV  S G+     ++L N    +
Sbjct: 81  RGGEDGTMQGLLECLEIPYTGSGVLASALAMDKLRTKQVWQSLGLATPAHAVLENESDCI 140

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   +  P ++KP   GSS+G+  +     +      +S+++   Q+L+EQ++ G E T
Sbjct: 141 CAATELGLPLIVKPAHEGSSIGMAKVNSVDELIAAWKAASTYD--SQVLVEQWIQGPEFT 198

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +    L    +  P S FY Y+ KY + ++ + +P  +     +E+++LA  A +AI
Sbjct: 199 VASLRGQVLPPIGLGTPHS-FYDYDAKYLASDTQYRIPCGLGDAQEQELKQLAARACEAI 257

Query: 239 GCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           G  G +R+D + D   +  FW LE+N  PGMT  S+ P  A  AG  F++L+L ++ D+ 
Sbjct: 258 GIAGWARTDVMQDAQGK--FWLLEVNTVPGMTDHSLVPMAARAAGLDFQQLVLAILADSV 315

Query: 298 CLR 300
             R
Sbjct: 316 QAR 318


>gi|300722061|ref|YP_003711341.1| D-alanine-D-alanine ligase B [Xenorhabdus nematophila ATCC 19061]
 gi|297628558|emb|CBJ89130.1| D-alanine-D-alanine ligase B, affects cell division [Xenorhabdus
           nematophila ATCC 19061]
          Length = 306

 Score =  173 bits (439), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 107/303 (35%), Positives = 168/303 (55%), Gaps = 13/303 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL SG+A  + L++AG     +D        L        F  LHG
Sbjct: 5   VAVLLGGTSAEREVSLQSGQAIVTGLKEAGINAYSVDTKDFDVTKLKEEGFSKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFT- 117
             GEDG +Q +LE L++PYT SG++ASA+SMDK+R+KQ+     +PV P + +N  +F  
Sbjct: 65  RGGEDGTLQGLLEFLQLPYTGSGVMASAVSMDKLRTKQLWQGSKLPVSPYVAINSQKFEQ 124

Query: 118 ------MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                  D    +  P ++KP   GSS+G+   K +    L    + ++ +   +L+E++
Sbjct: 125 VSDFQLQDYVQELGLPLMVKPNLEGSSVGM--TKVNDYAELRGALALAFKYDTDVLVEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T G +GD +L    I  P   FY Y+ KY S  + +  P+ + ++  +E+  +A
Sbjct: 183 LFGPEYTVGFLGDEALPSIRIQAPDV-FYDYDAKYISNETQYFCPSGLSVEKEQELVDIA 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A++A+GCRG  R D + D      + LE N  PGMT  S+ P  A  AG+SF +L++ 
Sbjct: 242 SEAYKALGCRGWGRVDIM-DDGKGNFYLLEANTCPGMTSHSLVPLAARQAGFSFSQLVVR 300

Query: 292 MVE 294
           ++E
Sbjct: 301 ILE 303


>gi|170768438|ref|ZP_02902891.1| D-alanine--D-alanine ligase B [Escherichia albertii TW07627]
 gi|170122542|gb|EDS91473.1| D-alanine--D-alanine ligase B [Escherichia albertii TW07627]
          Length = 306

 Score =  173 bits (439), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 107/303 (35%), Positives = 164/303 (54%), Gaps = 13/303 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SG A  + L + G     +D        L  +     F  LHG
Sbjct: 5   IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEIDVTQLKSMGFQKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118
             GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK +    G+PV P + + R     
Sbjct: 65  RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124

Query: 119 ---DSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
              D Q      +  P ++KP + GSS+G+  +  + ++  D L+  ++ H +++LIE++
Sbjct: 125 GLSDEQIADISALGLPLIVKPSREGSSVGMSKVVAENTLQ-DALR-LAFQHDEEVLIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L    I  P   FY YE KY S  + +  P+ +       +Q L 
Sbjct: 183 LSGPEFTVAILGEEILPSIRIQ-PAGTFYDYEAKYLSDETQYFCPSGLEASQEANLQALV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A   +GC+G  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 242 LKAWMTLGCKGWGRIDVMLDS-DGQFYLLEANTSPGMTSHSLVPMAARQAGLSFSQLVVR 300

Query: 292 MVE 294
           ++E
Sbjct: 301 ILE 303


>gi|89902192|ref|YP_524663.1| D-alanine--D-alanine ligase [Rhodoferax ferrireducens T118]
 gi|123091124|sp|Q21SX1|DDL_RHOFD RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|89346929|gb|ABD71132.1| D-alanine--D-alanine ligase [Rhodoferax ferrireducens T118]
          Length = 346

 Score =  173 bits (438), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 113/307 (36%), Positives = 169/307 (55%), Gaps = 17/307 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-VDRSVGLVLAHLKPD---LAFN 56
           +AVLMGG S+EREVSL SG+    AL   G      D  +R     LA LK +     F 
Sbjct: 29  VAVLMGGASAEREVSLMSGQGVLQALISQGVDAHAFDPAERD----LAELKVEGFSHCFI 84

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116
            LHG FGEDG VQ  LELL IPYT SG++AS++++DK+ +K++  S G+P      V+  
Sbjct: 85  ALHGRFGEDGTVQGALELLGIPYTGSGVMASSIAIDKVMTKRIWRSEGLPTPEWRQVDSA 144

Query: 117 TMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
              S+    +  P ++KP + GS++G+  + + +        + +  H   +L EQ+V G
Sbjct: 145 AATSEAFAALGSPMIVKPDREGSTIGLTKVTQIEQC--GAAYALAARHDAMVLCEQFVKG 202

Query: 175 IELTCGVMGDAS----LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            E+T  ++G  +    L V  I  P  + Y Y+ KY +  + +++PA +P      +Q+L
Sbjct: 203 DEVTIPLLGSGAGAHALPVIRIVAPDGN-YDYQNKYFTDTTQYLVPANLPAGEEAHIQQL 261

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A  A+Q +GCRG +R D + D  +R  F LEIN  PGMTP S+ P  A  AG S+  L L
Sbjct: 262 ALKAYQVLGCRGWARVDVMIDARTRAPFLLEINTSPGMTPHSLVPMAAKAAGVSYPALCL 321

Query: 291 WMVEDAS 297
            ++  A+
Sbjct: 322 EVLRHAT 328


>gi|257483445|ref|ZP_05637486.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. tabaci ATCC
           11528]
 gi|331011579|gb|EGH91635.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. tabaci ATCC
           11528]
          Length = 319

 Score =  173 bits (438), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 116/303 (38%), Positives = 170/303 (56%), Gaps = 8/303 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+ER VSL+SG A   AL DAG     IDV       L   K D AF VLHG
Sbjct: 21  VAVLFGGKSAERAVSLNSGNAVLKALLDAGVDAFGIDVGDDFLQRLVSEKIDRAFIVLHG 80

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV-CPSILVNRF-TM 118
             GEDG +Q +LE LEIPYT SG+LASAL+MDK+R+KQV  S G+     ++L N    +
Sbjct: 81  RGGEDGTMQGLLECLEIPYTGSGVLASALAMDKLRTKQVWQSLGLATPLHAVLGNESDCI 140

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   +  P ++KP   GSS+G+  +     +      +S+++   Q+L+EQ++ G E T
Sbjct: 141 CAATELGFPLIVKPAHEGSSIGMAKVNSVDELIAAWKSASTYDS--QVLVEQWIQGPEFT 198

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +    L    +  P S FY Y+ KY + ++ + +P  +     +E+++LA  A  AI
Sbjct: 199 VASLRGQVLPPIGLGTPHS-FYDYDAKYLASDTQYRIPCGLGDAQEQELKQLAARACDAI 257

Query: 239 GCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           G  G +R+D + D   +  FW LE+N  PGMT  S+ P  A  AG  F++L+L ++ D+ 
Sbjct: 258 GIAGWARTDVMQDAQGK--FWLLEVNTVPGMTDHSLVPMAARAAGLDFQQLVLAILADSV 315

Query: 298 CLR 300
             R
Sbjct: 316 QAR 318


>gi|264680244|ref|YP_003280154.1| D-alanine--D-alanine ligase [Comamonas testosteroni CNB-2]
 gi|262210760|gb|ACY34858.1| D-alanine--D-alanine ligase [Comamonas testosteroni CNB-2]
          Length = 323

 Score =  173 bits (438), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 109/297 (36%), Positives = 161/297 (54%), Gaps = 11/297 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSEREVSL SG    +AL+  G    + D        L     D  F  LHG
Sbjct: 16  VAVLMGGRSSEREVSLMSGAGVLAALQSKGVDAHKFDPAEQGLEQLKVQGFDRCFIALHG 75

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF--TM 118
            +GEDG VQ  LELL+IPYT SG++AS+++MDK+ +K++    G+P     +V     T 
Sbjct: 76  RYGEDGTVQGALELLDIPYTGSGVMASSIAMDKIMTKRIWRFEGLPTPDWRMVASAAETR 135

Query: 119 DSQHLISPPYVIKPLKGGSSLGII-VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            +   +  P ++KP + GSS+G+  V+  D+      L +    +  ++L EQ++ G E 
Sbjct: 136 AALEALGAPMIVKPARDGSSIGLTKVMNADECAKAYELAA---QYDAEVLCEQFIAGDET 192

Query: 178 TCGVMGDAS----LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           TC V+G  +    L V  I  P+ + Y Y+ KY +  + +  P+ +P     E+QR+   
Sbjct: 193 TCPVLGTGAQAGALPVIRIVAPEGN-YDYQNKYFTDTTQYHCPSGLPAAEEAEIQRIVEK 251

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A + +GCRG +R+D +     RK F LEIN  PGMT  S+ P  A  +G S+  L L
Sbjct: 252 AFRTLGCRGWARADIMIRASDRKPFLLEINTSPGMTGHSLVPMAARASGVSYENLCL 308


>gi|71735690|ref|YP_276228.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. phaseolicola
           1448A]
 gi|71556243|gb|AAZ35454.1| D-alanine--D-alanine ligase B [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|320322448|gb|EFW78541.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. glycinea str.
           B076]
 gi|320330083|gb|EFW86070.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. glycinea str.
           race 4]
          Length = 319

 Score =  173 bits (438), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 116/303 (38%), Positives = 170/303 (56%), Gaps = 8/303 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+ER VSL+SG A   AL DAG     IDV       L   K D AF VLHG
Sbjct: 21  VAVLFGGKSAERAVSLNSGNAVLKALLDAGVDAFGIDVGDDFLQRLVSEKIDRAFIVLHG 80

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV-CPSILVNRF-TM 118
             GEDG +Q +LE LEIPYT SG+LASAL+MDK+R+KQV  S G+     ++L N    +
Sbjct: 81  RGGEDGTMQGLLECLEIPYTGSGVLASALAMDKLRTKQVWQSLGLATPLHAVLGNESDCI 140

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   +  P ++KP   GSS+G+  +     +      +S+++   Q+L+EQ++ G E T
Sbjct: 141 CAATELGFPLIVKPAHEGSSIGMAKVNSVDELIAAWKAASTYDS--QVLVEQWIQGPEFT 198

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +    L    +  P S FY Y+ KY + ++ + +P  +     +E+++LA  A  AI
Sbjct: 199 VASLRGQVLPPIGLGTPHS-FYDYDAKYLASDTQYRIPCGLGDAQEQELKQLAARACDAI 257

Query: 239 GCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           G  G +R+D + D   +  FW LE+N  PGMT  S+ P  A  AG  F++L+L ++ D+ 
Sbjct: 258 GIAGWARTDVMQDAQGK--FWLLEVNTVPGMTDHSLVPMAARAAGLDFQQLVLAILADSV 315

Query: 298 CLR 300
             R
Sbjct: 316 QAR 318


>gi|21241551|ref|NP_641133.1| D-alanine--D-alanine ligase [Xanthomonas axonopodis pv. citri str.
           306]
 gi|39930906|sp|Q8PPA6|DDL_XANAC RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|21106902|gb|AAM35669.1| D-alanine-D-alanine ligase B [Xanthomonas axonopodis pv. citri str.
           306]
          Length = 318

 Score =  173 bits (438), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 111/300 (37%), Positives = 166/300 (55%), Gaps = 12/300 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG SSEREVSL+SG     AL   G     +D   ++   L   + D  FNVLHG
Sbjct: 19  VAVLLGGTSSEREVSLNSGGNVLDALRARGVDAQPVDGIPALAKALVAQQFDRVFNVLHG 78

Query: 61  NFG--EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV--PVCPSILVNRF 116
           + G  EDG+VQ ++E   +PYT S +L SALSMDK+R+KQV  S G+  P    +     
Sbjct: 79  HNGGGEDGIVQGLMEAFGVPYTGSDVLGSALSMDKIRTKQVWLSLGLSTPRYARLAAGAS 138

Query: 117 TMD---SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
             D   +   I  P ++KP   GSS+G+  +     +   +  ++ ++    LL+EQ ++
Sbjct: 139 AEDIHAAARQIGLPIIVKPANEGSSVGVSRVFDQAQLEEAVTLAARYDGA--LLMEQLIE 196

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           G ELT  V+GD +L    I VPK  +Y Y  KY + ++ ++ P  +  +   ++++LA  
Sbjct: 197 GDELTVAVLGDTALPSIRI-VPKGQWYDYNAKYIADDTQYLCPG-LEGEAEAQIRQLALD 254

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           A +A GCRG  R D + D  S +++ LE+N  PGMT  S+ P+ A   G  F E L+W V
Sbjct: 255 AFRAAGCRGWGRVDVMRDGSSGQLYLLEVNTAPGMTSHSLVPKAARQLGIDF-ETLVWRV 313


>gi|294670617|ref|ZP_06735495.1| hypothetical protein NEIELOOT_02341 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291307656|gb|EFE48899.1| hypothetical protein NEIELOOT_02341 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 308

 Score =  173 bits (438), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 113/302 (37%), Positives = 165/302 (54%), Gaps = 14/302 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP---DLAFNV 57
           +AVLMGG SSEREVSL+SG+A   AL   G      D   +    L  LK    D AFN+
Sbjct: 12  VAVLMGGFSSEREVSLASGQAVLEALRSKGVDAHAFDPKETP---LGELKTQGFDCAFNI 68

Query: 58  LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117
           LHG FGEDG VQ  LE L I YT  G+LAS++ MDK RSK +    G+PV P   V R  
Sbjct: 69  LHGVFGEDGTVQGALEALGIRYTGCGVLASSIGMDKYRSKLLWKGLGLPV-PDYAVLRDD 127

Query: 118 MD---SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
            D    +  +  P  +KP   GSS+G++ +K  ++  L  +         +++ E ++ G
Sbjct: 128 SDFDAVERQLGLPMFVKPANEGSSVGVVKVK--EAGRLKEVYHELKQFRGEIIAEAFIGG 185

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
            E TCG++   +L    I +P ++FY  E KY   ++ ++ P+ +  +  + ++ L   A
Sbjct: 186 GEYTCGILNGRALPSVRI-IPATEFYDKEAKYDRDDTVYLCPSDLSEEDERLMRDLTVRA 244

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             AIG RG  R DFL D  S +++ LE N  PGMT  S+ P+ AA  G+ F +L + +++
Sbjct: 245 FHAIGGRGWGRIDFLKDE-SGRLYLLEANTLPGMTSHSLVPKAAAQQGWDFAQLCVEILK 303

Query: 295 DA 296
            A
Sbjct: 304 TA 305


>gi|313500435|gb|ADR61801.1| Ddl [Pseudomonas putida BIRD-1]
          Length = 318

 Score =  173 bits (438), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 114/303 (37%), Positives = 165/303 (54%), Gaps = 8/303 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL SG A   AL  AG  V  IDV   +   L   K D AF +LHG
Sbjct: 20  VAVLYGGKSAEREVSLKSGAAVIDALSTAGVDVVAIDVGDDLLARLQSEKIDRAFIILHG 79

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--M 118
             GEDG +Q +LE L IPYT SGILASAL+MDK+R+KQV  S G+P     ++   +  +
Sbjct: 80  RGGEDGSMQGLLECLGIPYTGSGILASALAMDKLRTKQVWQSLGIPTPRHAVLASESDCL 139

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   +  P ++KP   GSS+G+  +   Q +      ++ ++   Q+L+EQ++ G E T
Sbjct: 140 QASTELGFPLIVKPAHEGSSIGMAKVNSAQELVAAWQDAAKYD--SQVLVEQWIHGPEFT 197

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             V+    L    +  P   FY Y+ KY + ++ + +P  +     +E+  L   A  AI
Sbjct: 198 IAVLRGQVLPPIALGTPHV-FYDYDAKYIANDTQYRIPCGLDSVKEQELIDLTARACDAI 256

Query: 239 GCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           G  G  R D + D   R  FW LE+N  PGMT  S+ P  A  AG  F++L+L ++ ++ 
Sbjct: 257 GIEGWGRLDVMQDEQGR--FWLLEVNTAPGMTDHSLVPMAARAAGLDFQQLVLAILAESV 314

Query: 298 CLR 300
             R
Sbjct: 315 ATR 317


>gi|288937136|ref|YP_003441195.1| D-alanine/D-alanine ligase [Klebsiella variicola At-22]
 gi|290512559|ref|ZP_06551925.1| D-alanine-D-alanine ligase [Klebsiella sp. 1_1_55]
 gi|288891845|gb|ADC60163.1| D-alanine/D-alanine ligase [Klebsiella variicola At-22]
 gi|289774900|gb|EFD82902.1| D-alanine-D-alanine ligase [Klebsiella sp. 1_1_55]
          Length = 306

 Score =  173 bits (438), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 108/300 (36%), Positives = 164/300 (54%), Gaps = 15/300 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV-LAHLKPDLAFNVLH 59
           +AVL GG S+EREVSL+SG A  + L + G     +D  R + +  L +L    AF  LH
Sbjct: 5   IAVLFGGTSAEREVSLNSGAAVLAGLREGGVDAHPVD-PRDIDITQLKNLGFKKAFIALH 63

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--FT 117
           G  GEDG +Q +L+L+++PYT SG++ASALSMDK+RSK +    G+PV P + + R  FT
Sbjct: 64  GRGGEDGTLQGLLDLIQLPYTGSGVMASALSMDKLRSKWLWQGAGLPVAPWVALTRAQFT 123

Query: 118 MDSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                 +         P +IKP + GSS+G+  + +   +P  L  + ++ H D++L+E+
Sbjct: 124 AGLSAAVEQQIAALGLPVIIKPSREGSSVGMSKVSESCDLPSAL--ALAFQHDDEVLVEK 181

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
           ++ G E T  ++G+  L    I    + FY YE KY S  + +  P         ++Q L
Sbjct: 182 WLSGPEFTVAIVGEEILPSIRIQAAGT-FYDYEAKYLSDETQYFCPGFEDPARESDIQSL 240

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
              A   +GC+G  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++
Sbjct: 241 VLKAWNVLGCKGWGRIDVMLDS-DGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVV 299


>gi|330987136|gb|EGH85239.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. lachrymans
           str. M301315]
          Length = 319

 Score =  173 bits (438), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 116/303 (38%), Positives = 170/303 (56%), Gaps = 8/303 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+ER VSL+SG A   AL DAG     IDV       L   K D AF VLHG
Sbjct: 21  VAVLFGGKSAERAVSLNSGNAVLKALLDAGVDAFGIDVGDDFLQRLVSEKIDRAFIVLHG 80

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV-CPSILVNRF-TM 118
             GEDG +Q +LE LEIPYT SG+LASAL+MDK+R+KQV  S G+     ++L N    +
Sbjct: 81  RGGEDGTMQGLLECLEIPYTGSGVLASALAMDKLRTKQVWQSLGLATPLHAVLGNESDCI 140

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   +  P ++KP   GSS+G+  +     +      +S+++   Q+L+EQ++ G E T
Sbjct: 141 CAATELGFPLIVKPAHEGSSIGMAKVNSVDELIAAWKSASTYDS--QVLVEQWIQGPEFT 198

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +    L    +  P S FY Y+ KY + ++ + +P  +     +E+++LA  A  AI
Sbjct: 199 VASLRGQVLPPIGLGTPHS-FYDYDAKYLASDTQYRIPCGLGDAQEQELKQLAARACDAI 257

Query: 239 GCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           G  G +R+D + D   +  FW LE+N  PGMT  S+ P  A  AG  F++L+L ++ D+ 
Sbjct: 258 GIAGWARTDVMQDAQGK--FWLLEVNTVPGMTDHSLVPMAARAAGLDFQQLVLAILADSV 315

Query: 298 CLR 300
             R
Sbjct: 316 QAR 318


>gi|333010588|gb|EGK30021.1| D-alanine--D-alanine ligase B [Shigella flexneri VA-6]
          Length = 306

 Score =  173 bits (438), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 107/303 (35%), Positives = 164/303 (54%), Gaps = 13/303 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SG A  + L + G     +D        L  +     F  LHG
Sbjct: 5   IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118
             GEDG +Q +LEL+ +PYT SG++ASALS+DK+RSK +    G+PV P + + R     
Sbjct: 65  RGGEDGTLQGMLELMGLPYTGSGVMASALSIDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124

Query: 119 ---DSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
              D Q      +  P ++KP + GSS+G+  +  + ++  D L+  ++ H +++LIE++
Sbjct: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQ-DALR-LAFQHDEEVLIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L    I  P   FY YE KY S  + +  PA +       +Q L 
Sbjct: 183 LSGPEFTVAILGEEILPSIRIQ-PSGTFYDYEAKYLSDETQYFCPAGLKASQEANLQALV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A   +GC+G  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 242 LKAWTTLGCKGWGRIDVMLDS-DGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300

Query: 292 MVE 294
           ++E
Sbjct: 301 ILE 303


>gi|241760206|ref|ZP_04758302.1| D-alanine--D-alanine ligase B [Neisseria flavescens SK114]
 gi|241319317|gb|EER55782.1| D-alanine--D-alanine ligase B [Neisseria flavescens SK114]
          Length = 304

 Score =  173 bits (438), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 116/308 (37%), Positives = 168/308 (54%), Gaps = 25/308 (8%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD---LAFNV 57
           +AVLMGG SSEREVSL SG A  +AL+  G      D   +    L+ LK      AFN+
Sbjct: 7   VAVLMGGFSSEREVSLDSGAAILAALKSKGVDAHAFDPKETP---LSELKTQGFQTAFNI 63

Query: 58  LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117
           LHG FGEDG +Q  LEL+ IPYT SG+ ASAL MDK R K +  + G+PV P  +V    
Sbjct: 64  LHGTFGEDGAIQGALELMGIPYTGSGVAASALGMDKYRCKLIWQAVGLPV-PEFVVLHDD 122

Query: 118 MD---SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP-----LDLLQSSSWNHGDQLLIE 169
            D    +  +  P  +KP   GSS+G++ +K+   +      L  LQ        +++ E
Sbjct: 123 SDFDAVEEKLGLPMFVKPASEGSSVGVVKVKEKGRLKSVYEELKHLQG-------EIIAE 175

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           +++ G E +C V+    L    I +P ++FY YE KY+  ++ +  P++   +  + + R
Sbjct: 176 RFIGGGEYSCPVLNGKGLPSIHI-IPVTEFYDYEAKYNRDDTVYQCPSEDLSEAEENLMR 234

Query: 230 -LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
            LA    QAIG  G SR DFL D    K++ LEIN  PGMT  S+ P+ A + G  F +L
Sbjct: 235 ELAVRGAQAIGADGCSRVDFLKD-TDGKLYLLEINTLPGMTSHSLVPKSAGHTGVDFADL 293

Query: 289 LLWMVEDA 296
            + +++ A
Sbjct: 294 CIEILKTA 301


>gi|269213848|ref|ZP_05982990.2| D-alanine--D-alanine ligase B [Neisseria cinerea ATCC 14685]
 gi|269145191|gb|EEZ71609.1| D-alanine--D-alanine ligase B [Neisseria cinerea ATCC 14685]
          Length = 319

 Score =  173 bits (438), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 116/306 (37%), Positives = 166/306 (54%), Gaps = 21/306 (6%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSERE+SL SG A  +AL+  G      D   +    L +     AFN+LHG
Sbjct: 22  VAVLMGGFSSEREISLDSGAAILNALKSKGIDAHAFDPKETPLAELKNQGFQTAFNILHG 81

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV----NRF 116
            +GEDG VQ  LELL IPYT SG+ ASA+ MDK R K +  + G+PV P   V    + F
Sbjct: 82  TYGEDGAVQGALELLGIPYTGSGVAASAIGMDKYRCKLIWQALGLPV-PEFAVLHEDSDF 140

Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP-----LDLLQSSSWNHGDQLLIEQY 171
               Q L  P +V KP   GSS+G++ +K+   +      L  LQ        +++ E++
Sbjct: 141 DAVEQQLGLPMFV-KPAAEGSSVGVVKVKEKGRLKSVYEELKHLQG-------EIIAERF 192

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR-L 230
           + G E +C V+    L    I +P ++FY YE KY+  ++ +  P++   +  + + R L
Sbjct: 193 IGGGEYSCPVLNGKGLPSIHI-IPATEFYDYEAKYNRDDTVYQCPSEDLSEAEENLMRAL 251

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    QAIG  G  R DFL D    K++ LEIN  PGMT  S+ P+ AA  G  F +L +
Sbjct: 252 AVRGAQAIGAEGCVRVDFLRD-TDGKLYLLEINTLPGMTSHSLVPKSAARTGVDFADLCI 310

Query: 291 WMVEDA 296
            +++ A
Sbjct: 311 EILKTA 316


>gi|325496028|gb|EGC93887.1| D-alanine--D-alanine ligase [Escherichia fergusonii ECD227]
          Length = 309

 Score =  173 bits (438), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 110/309 (35%), Positives = 169/309 (54%), Gaps = 25/309 (8%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAG---FKVSQIDVDRSVGLVLAHLKP---DLA 54
           +AVL+GG S+EREVSL+SG A  + L + G   + V   DVD      +A LK       
Sbjct: 8   IAVLLGGTSAEREVSLNSGAAVLAGLREGGVDAYPVDPKDVD------VAQLKSMGFQKV 61

Query: 55  FNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
           F  LHG  GEDG +Q +LELL +PYT SG++ASA+SMDK+RSK +    G+PV P + + 
Sbjct: 62  FIALHGRGGEDGTLQGMLELLGLPYTGSGVMASAISMDKLRSKLLWQGAGLPVAPWVAIT 121

Query: 115 RFTMD---SQHLISP------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
           R   +   S  ++        P ++KP + GSS+G+  +  + S+   L    ++ H D+
Sbjct: 122 RTEFEKGLSDEVVKQISALGLPLIVKPSREGSSVGMSKVVAENSVENAL--KLAFQHDDE 179

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
           +L+E+++ G E T  ++G+  L    I  P   FY YE KY S  + +  P+ +  +   
Sbjct: 180 VLVEKWLSGPEFTVAILGEEILPSIRIQ-PAGTFYDYEAKYLSDETQYFCPSGLEAEQES 238

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285
            ++ L   A   +GC+G  R D + D    + + LE N  PGMT  S+ P  A  AG SF
Sbjct: 239 ILKSLVQKAWTTLGCKGWGRIDVMLDD-DGQFYLLEANTSPGMTSHSLVPMAARQAGMSF 297

Query: 286 RELLLWMVE 294
            +L++ ++E
Sbjct: 298 SQLVVRILE 306


>gi|330888570|gb|EGH21231.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. mori str.
           301020]
          Length = 319

 Score =  173 bits (438), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 116/303 (38%), Positives = 170/303 (56%), Gaps = 8/303 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+ER VSL+SG A   AL DAG     IDV       L   K D AF VLHG
Sbjct: 21  VAVLFGGKSAERAVSLNSGNAVLEALLDAGVDAFGIDVGDDFLQRLVSEKIDRAFIVLHG 80

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV-CPSILVNRF-TM 118
             GEDG +Q +LE LEIPYT SG+LASAL+MDK+R+KQV  S G+     ++L N    +
Sbjct: 81  RGGEDGTMQGLLECLEIPYTGSGVLASALAMDKLRTKQVWQSLGLATPLHAVLGNESDCI 140

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   +  P ++KP   GSS+G+  +     +      +S+++   Q+L+EQ++ G E T
Sbjct: 141 CAATELGFPLIVKPAHEGSSIGMAKVNSVDELIAAWKAASTYDS--QVLVEQWIQGPEFT 198

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +    L    +  P S FY Y+ KY + ++ + +P  +     +E+++LA  A  AI
Sbjct: 199 VASLRGQVLPPIGLGTPHS-FYDYDAKYLASDTQYRIPCGLGDAQEQELKQLAARACDAI 257

Query: 239 GCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           G  G +R+D + D   +  FW LE+N  PGMT  S+ P  A  AG  F++L+L ++ D+ 
Sbjct: 258 GIAGWARTDVMQDAQGK--FWLLEVNTVPGMTDHSLVPMAARAAGLDFQQLVLAILADSV 315

Query: 298 CLR 300
             R
Sbjct: 316 QAR 318


>gi|24111537|ref|NP_706047.1| D-alanine--D-alanine ligase [Shigella flexneri 2a str. 301]
 gi|110804156|ref|YP_687676.1| D-alanine--D-alanine ligase [Shigella flexneri 5 str. 8401]
 gi|39931097|sp|Q83MF7|DDLB_SHIFL RecName: Full=D-alanine--D-alanine ligase B; AltName:
           Full=D-Ala-D-Ala ligase B; AltName: Full=D-alanylalanine
           synthetase B
 gi|24050296|gb|AAN41754.1| D-alanine-D-alanine ligase B [Shigella flexneri 2a str. 301]
 gi|110613704|gb|ABF02371.1| D-alanine-D-alanine ligase B [Shigella flexneri 5 str. 8401]
 gi|281599454|gb|ADA72438.1| D-alanine--D-alanine ligase B [Shigella flexneri 2002017]
 gi|313646525|gb|EFS10986.1| D-alanine--D-alanine ligase B [Shigella flexneri 2a str. 2457T]
 gi|332762094|gb|EGJ92363.1| D-alanine--D-alanine ligase B [Shigella flexneri 4343-70]
 gi|332762306|gb|EGJ92573.1| D-alanine--D-alanine ligase B [Shigella flexneri 2747-71]
 gi|332764938|gb|EGJ95166.1| D-alanine--D-alanine ligase B [Shigella flexneri K-671]
 gi|332768882|gb|EGJ99061.1| D-alanine--D-alanine ligase [Shigella flexneri 2930-71]
 gi|333009448|gb|EGK28904.1| D-alanine--D-alanine ligase B [Shigella flexneri K-218]
 gi|333011480|gb|EGK30894.1| D-alanine--D-alanine ligase B [Shigella flexneri K-272]
 gi|333021723|gb|EGK40972.1| D-alanine--D-alanine ligase B [Shigella flexneri K-227]
 gi|333022352|gb|EGK41590.1| D-alanine--D-alanine ligase B [Shigella flexneri K-304]
          Length = 306

 Score =  172 bits (437), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 107/303 (35%), Positives = 164/303 (54%), Gaps = 13/303 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SG A  + L + G     +D        L  +     F  LHG
Sbjct: 5   IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118
             GEDG +Q +LEL+ +PYT SG++ASALS+DK+RSK +    G+PV P + + R     
Sbjct: 65  RGGEDGTLQGMLELMGLPYTGSGVMASALSIDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124

Query: 119 ---DSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
              D Q      +  P ++KP + GSS+G+  +  + ++  D L+  ++ H +++LIE++
Sbjct: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQ-DALR-LAFQHDEEVLIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L    I  P   FY YE KY S  + +  PA +       +Q L 
Sbjct: 183 LSGPEFTVAILGEEILPSIRIQ-PSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A   +GC+G  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 242 LKAWTTLGCKGWGRIDVMLDS-DGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300

Query: 292 MVE 294
           ++E
Sbjct: 301 ILE 303


>gi|261364822|ref|ZP_05977705.1| D-alanine--D-alanine ligase B [Neisseria mucosa ATCC 25996]
 gi|288566859|gb|EFC88419.1| D-alanine--D-alanine ligase B [Neisseria mucosa ATCC 25996]
          Length = 304

 Score =  172 bits (437), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 119/309 (38%), Positives = 169/309 (54%), Gaps = 27/309 (8%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD---LAFNV 57
           +AVLMGG SSERE+SL SG A  +AL+  G      D   +    LA LK      AFN+
Sbjct: 7   VAVLMGGFSSEREISLDSGAAILNALKSKGIDAHAFDPKETP---LAELKTQGFQTAFNI 63

Query: 58  LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---- 113
           LHG +GEDG VQ  LELL IPYT SG+ ASA+ MDK R K +  + G+PV P   V    
Sbjct: 64  LHGTYGEDGAVQGALELLGIPYTGSGVAASAIGMDKYRCKLIWQALGLPV-PEFAVLHED 122

Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP-----LDLLQSSSWNHGDQLLI 168
           + F    Q L  P +V KP   GSS+G++ +K+   +      L  LQ        +++ 
Sbjct: 123 SDFDAVEQQLGLPMFV-KPAAEGSSVGVVKVKEKGRLKSVYEELKHLQG-------EIIA 174

Query: 169 EQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           E+++ G E +C V+    L    I +P ++FY YE KY+  ++ +  P++   +  + + 
Sbjct: 175 ERFIGGGEYSCPVLNGKGLPSIHI-IPATEFYDYEAKYNRDDTVYQCPSEDLSEAEENLM 233

Query: 229 R-LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287
           R LA    QAIG  G  R DFL D    K++ LEIN  PGMT  S+ P+ AA+ G  F +
Sbjct: 234 RALAVRGAQAIGADGCVRVDFLKD-TDGKLYLLEINTLPGMTSHSLVPKSAAHTGVDFAD 292

Query: 288 LLLWMVEDA 296
           L + +++ A
Sbjct: 293 LCIEILKTA 301


>gi|289677706|ref|ZP_06498596.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. syringae FF5]
          Length = 307

 Score =  172 bits (437), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 114/292 (39%), Positives = 167/292 (57%), Gaps = 8/292 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+ER VSL+SGKA  SAL +AG     IDV       L   K D AF VLHG
Sbjct: 21  VAVLFGGKSAERAVSLNSGKAVLSALLEAGVDAFGIDVGDDFLQRLVSEKIDRAFIVLHG 80

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV-CPSILVNRF-TM 118
             GEDG +Q +LE LEIPYT SG+LASAL+MDK+R+KQV  S G+     ++L N    +
Sbjct: 81  RGGEDGTMQGLLECLEIPYTGSGVLASALAMDKLRTKQVWQSLGLATPLHAVLENESDCI 140

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   +  P ++KP   GSS+G+  +     +      +S+++   Q+L+EQ++ G E T
Sbjct: 141 CAATELGLPLIVKPAHEGSSIGMAKVNSVDELIAAWKAASTYD--SQVLVEQWIQGPEFT 198

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +    L    +  P S FY Y+ KY + ++ + +P  +     +E+++LA  A +AI
Sbjct: 199 VASLRGQVLPPIGLGTPHS-FYDYDAKYLASDTQYRIPCGLGDAQEQELKQLAARACEAI 257

Query: 239 GCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           G  G +R+D + D   +  FW LE+N  PGMT  S+ P  A  AG  F++L+
Sbjct: 258 GIAGWARTDVMQDAQGK--FWLLEVNTVPGMTDHSLVPMAARAAGLDFQQLV 307


>gi|218547549|ref|YP_002381340.1| D-alanine--D-alanine ligase [Escherichia fergusonii ATCC 35469]
 gi|218355090|emb|CAQ87697.1| D-alanine:D-alanine ligase [Escherichia fergusonii ATCC 35469]
 gi|324112495|gb|EGC06472.1| D-alanine-D-alanine ligase [Escherichia fergusonii B253]
          Length = 306

 Score =  172 bits (437), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 110/309 (35%), Positives = 169/309 (54%), Gaps = 25/309 (8%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAG---FKVSQIDVDRSVGLVLAHLKP---DLA 54
           +AVL+GG S+EREVSL+SG A  + L + G   + V   DVD      +A LK       
Sbjct: 5   IAVLLGGTSAEREVSLNSGAAVLAGLREGGVDAYPVDPKDVD------VAQLKSMGFQKV 58

Query: 55  FNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
           F  LHG  GEDG +Q +LELL +PYT SG++ASA+SMDK+RSK +    G+PV P + + 
Sbjct: 59  FIALHGRGGEDGTLQGMLELLGLPYTGSGVMASAISMDKLRSKLLWQGAGLPVAPWVAIT 118

Query: 115 RFTMD---SQHLISP------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
           R   +   S  ++        P ++KP + GSS+G+  +  + S+   L    ++ H D+
Sbjct: 119 RTEFEKGLSDEVVKQISALGLPLIVKPSREGSSVGMSKVVAENSVENAL--KLAFQHDDE 176

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
           +L+E+++ G E T  ++G+  L    I  P   FY YE KY S  + +  P+ +  +   
Sbjct: 177 VLVEKWLSGPEFTVAILGEEILPSIRIQ-PAGTFYDYEAKYLSDETQYFCPSGLEAEQES 235

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285
            ++ L   A   +GC+G  R D + D    + + LE N  PGMT  S+ P  A  AG SF
Sbjct: 236 ILKSLVQKAWTTLGCKGWGRIDVMLDD-DGQFYLLEANTSPGMTSHSLVPMAARQAGMSF 294

Query: 286 RELLLWMVE 294
            +L++ ++E
Sbjct: 295 SQLVVRILE 303


>gi|194439412|ref|ZP_03071489.1| D-alanine--D-alanine ligase B [Escherichia coli 101-1]
 gi|194421671|gb|EDX37681.1| D-alanine--D-alanine ligase B [Escherichia coli 101-1]
 gi|323970764|gb|EGB66018.1| D-alanine-D-alanine ligase [Escherichia coli TA007]
          Length = 306

 Score =  172 bits (437), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 107/303 (35%), Positives = 164/303 (54%), Gaps = 13/303 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SG A  + L + G     +D        L  +     F  LHG
Sbjct: 5   IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118
             GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK +    G+PV P +++ R     
Sbjct: 65  RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVVLTRAEFEK 124

Query: 119 ---DSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
              D Q      +  P ++KP + GSS+G+  +  + ++  D L+  ++ H +++LIE++
Sbjct: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQ-DALR-LAFQHDEEVLIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++ +  L    I  P   FY YE KY S  + +  PA +       +Q L 
Sbjct: 183 LSGPEFTVAILDEEILPSIRIQ-PSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A   +GC+G  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 242 LKAWTTLGCKGWGRIDVMLDS-DGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300

Query: 292 MVE 294
           ++E
Sbjct: 301 ILE 303


>gi|255659953|ref|ZP_05405362.1| D-alanine--D-alanine ligase [Mitsuokella multacida DSM 20544]
 gi|260847827|gb|EEX67834.1| D-alanine--D-alanine ligase [Mitsuokella multacida DSM 20544]
          Length = 312

 Score =  172 bits (437), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 103/307 (33%), Positives = 169/307 (55%), Gaps = 15/307 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-SVGLVLAHLKPDLAFNVLH 59
           + V+MGG S+E E+S  +G A   AL+  G+    ++++  +    +      + FN LH
Sbjct: 6   IVVVMGGPSTEAEISRQTGSAILKALQSKGYNAEGMELNPPTFAEDIKKSGCAIVFNALH 65

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G FGEDG++Q  L++L IPYT SG+LA+A++MDK  SK+V  + G+    S    R+ M 
Sbjct: 66  GKFGEDGVLQGTLDMLGIPYTGSGVLAAAVTMDKAASKRVFVAEGISTPRSHTYYRYEMK 125

Query: 120 S------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
                  +   S P V+K    GSS+G+ +++   ++   L ++ S+N  D++L+E+++ 
Sbjct: 126 RDLAAEIKQGFSLPVVVKAASQGSSIGVYIVETKDALEDALKEAFSYN--DEVLVEEFIR 183

Query: 174 GIELTCGVMGD----ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           G ELT  V G+     +  + EI    S  Y YE KY+   STH++PA++  +  KE+Q 
Sbjct: 184 GKELTVAVWGNEEKKEAFPIIEITT-TSGRYDYESKYTKGASTHIIPARVSAEKTKEIQD 242

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           LA     A GC+G++R D +        + +E+N  PGMT +S+ P+     G  F EL 
Sbjct: 243 LAIKTFTACGCKGVARVDMMLSE-DGTPYVIEVNSVPGMTELSLVPDAGRAMGVEFPELC 301

Query: 290 LWMVEDA 296
             ++E A
Sbjct: 302 ERILEMA 308


>gi|311280928|ref|YP_003943159.1| D-alanine/D-alanine ligase [Enterobacter cloacae SCF1]
 gi|308750123|gb|ADO49875.1| D-alanine/D-alanine ligase [Enterobacter cloacae SCF1]
          Length = 306

 Score =  172 bits (437), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 113/299 (37%), Positives = 163/299 (54%), Gaps = 13/299 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SG A  + L +AG     +D       +L       AF  LHG
Sbjct: 5   IAVLLGGTSAEREVSLNSGAAVLAGLREAGVDAYAVDPRDEDITLLKSKGFKKAFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118
             GEDG +Q +LEL  IPYT SG++ASA+SMDK+RSK +    G+PV P + + R     
Sbjct: 65  RGGEDGTLQGLLELTGIPYTGSGVMASAISMDKLRSKLLWQGAGLPVAPWVALTRAQFSQ 124

Query: 119 -----DSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                DSQ +  +  P ++KP + GSS+G+   K  +S  LD   + ++ H D++LIE++
Sbjct: 125 GLSAEDSQRIAALGLPLIVKPSREGSSVGM--SKVSESRALDAALALAFQHDDEVLIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  V+G+  L    I  P   FY YE KY S  + +  P        +E++ L 
Sbjct: 183 LSGPEFTVAVVGEEILPSIRIQ-PAGTFYDYEAKYLSDETKYFCPGCEDPQREEEMKALV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             A   +GC G  R D + D    +++ LE N  PGMT  S+ P  A  AG SF +L++
Sbjct: 242 LKAWNILGCSGWGRIDVMQDE-DGQLYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVV 299


>gi|146329245|ref|YP_001209868.1| D-alanine-D-alanine ligase [Dichelobacter nodosus VCS1703A]
 gi|190359128|sp|A5EY21|DDL_DICNV RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|146232715|gb|ABQ13693.1| D-alanine-D-alanine ligase [Dichelobacter nodosus VCS1703A]
          Length = 310

 Score =  172 bits (436), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 116/296 (39%), Positives = 162/296 (54%), Gaps = 12/296 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---DRSVGLVLAHLKPDLAFNV 57
           +AVL GG SSERE+SL  G+A  +AL  AG     +D    +R   L   H     AF +
Sbjct: 10  VAVLYGGNSSEREISLIGGRAVHAALCAAGIDAHLLDTGDPNRIWTLKDEHFS--RAFVM 67

Query: 58  LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---N 114
           LHG  GEDG +QAIL+ L IPYT S +LA AL+MDK+  K+V  S G+PV   +LV   +
Sbjct: 68  LHGRGGEDGEIQAILQWLGIPYTGSRVLACALAMDKVVCKKVWQSAGLPVLADVLVTPES 127

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
           RF    + L    +VIKP   GSS+G+  +K  + +   +  +       +++ E ++ G
Sbjct: 128 RFETLVEQLHCQDFVIKPALEGSSVGVSRVKNQEQLAAAIPFAGGARA--KIMAEPWIVG 185

Query: 175 IELTCGVMGDASLDVTEI-AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
            ELT G++ D  L   EI A    DFY Y+ KY + N+ ++ PA I   +    + +AF 
Sbjct: 186 RELTYGIVNDTVLPAIEIVAGNDHDFYDYDAKYHAANTQYLCPAPIDAALDARCREIAFA 245

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           A QAIG RG  R D + D  +R  + LEIN+ PGMT  S+ P  A   G  F  L+
Sbjct: 246 AFQAIGARGWGRVDMIVDAQNRP-YLLEINLVPGMTTHSLVPMAAQQIGMDFSALV 300


>gi|313895994|ref|ZP_07829548.1| UDP-N-acetylmuramate--L-alanine ligase [Selenomonas sp. oral taxon
           137 str. F0430]
 gi|312975419|gb|EFR40880.1| UDP-N-acetylmuramate--L-alanine ligase [Selenomonas sp. oral taxon
           137 str. F0430]
          Length = 776

 Score =  172 bits (436), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 111/311 (35%), Positives = 173/311 (55%), Gaps = 15/311 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59
           +AV+MGG S+E EVS  SG A   AL +  +    I+++  +    +  L+P L FN LH
Sbjct: 470 IAVVMGGPSTEAEVSRRSGAAILHALHEKNYPAVGIELNPATFAEEIKKLRPALVFNALH 529

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV--PVCPSILVNRFT 117
           G +GEDG++Q  L++L IPYT SG+ A+AL+MDK  +K++ ++ G+  P   S      T
Sbjct: 530 GKYGEDGVLQGTLDMLGIPYTGSGVRAAALTMDKTSAKRIFAAEGIATPRFRSFYAGTDT 589

Query: 118 MDSQHLI----SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
                 I    S P V+K  + GSS+G+ ++ ++  +   L    ++++G ++L+E+++ 
Sbjct: 590 GKIAEEILAAFSLPVVVKAPEQGSSIGVYIVTEEDDLRSSL--DEAFSYGGEVLVEEFIA 647

Query: 174 GIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           G ELT  V G+     +L V EI    S  Y YE KY+   S H++PA I  +   EVQ 
Sbjct: 648 GRELTVVVWGETGHAEALPVIEITT-TSGRYDYESKYTPGASAHLVPAPISPECTAEVQE 706

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           LA  A  A GC G++R D +    + K + +E+N  PGMT  S+ P+ A   G SF +L 
Sbjct: 707 LAVRAFNACGCTGVARLDVMLSE-TEKPYAIEVNSVPGMTETSLVPDAARAVGLSFPDLC 765

Query: 290 LWMVEDASCLR 300
             ++E A   R
Sbjct: 766 EKILEMAGYQR 776


>gi|26988073|ref|NP_743498.1| D-alanine--D-alanine ligase [Pseudomonas putida KT2440]
 gi|39931112|sp|Q88N74|DDLB_PSEPK RecName: Full=D-alanine--D-alanine ligase B; AltName:
           Full=D-Ala-D-Ala ligase B; AltName: Full=D-alanylalanine
           synthetase B
 gi|24982797|gb|AAN66962.1|AE016324_12 D-alanine--D-alanine ligase B [Pseudomonas putida KT2440]
          Length = 318

 Score =  172 bits (436), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 114/303 (37%), Positives = 164/303 (54%), Gaps = 8/303 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL SG A   AL  AG  V  IDV   +   L   K D AF +LHG
Sbjct: 20  VAVLYGGKSAEREVSLKSGAAVIDALSTAGVDVVAIDVGDDLLARLQSEKIDRAFIILHG 79

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--M 118
             GEDG +Q +LE L IPYT SGILASAL+MDK+R+KQV  S G+P     ++   +  +
Sbjct: 80  RGGEDGSMQGLLECLGIPYTGSGILASALAMDKLRTKQVWQSLGIPTPRHAVLASESDCL 139

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   +  P ++KP   GSS+G+  +   Q +      ++ ++   Q+L+EQ++ G E T
Sbjct: 140 QASTELGFPLIVKPAHEGSSIGMAKVNSTQELVAAWQDAAKYD--SQVLVEQWIHGPEFT 197

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             V+    L    +  P   FY Y+ KY   ++ + +P  +     +E+  L   A  AI
Sbjct: 198 IAVLRGQVLPPIALGTPHV-FYDYDAKYIVNDTQYRIPCGLDSVKEQELIDLTARACDAI 256

Query: 239 GCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           G  G  R D + D   R  FW LE+N  PGMT  S+ P  A  AG  F++L+L ++ ++ 
Sbjct: 257 GIEGWGRLDVMQDEQGR--FWLLEVNTAPGMTDHSLVPMAARAAGLDFQQLVLAILAESV 314

Query: 298 CLR 300
             R
Sbjct: 315 ATR 317


>gi|330811577|ref|YP_004356039.1| D-alanine--D-alanine ligase B [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327379685|gb|AEA71035.1| D-alanine--D-alanine ligase B [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 321

 Score =  172 bits (436), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 114/294 (38%), Positives = 161/294 (54%), Gaps = 10/294 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL SG A   AL+ AG     IDV       L   K D AF +LHG
Sbjct: 20  VAVLFGGKSAEREVSLKSGNAVLQALQSAGVDAFGIDVGDDFLQRLLSEKIDRAFIILHG 79

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119
             GEDG +Q +LE L IPYT SGILASAL+MDK+R+KQV  S G+P  P   V     D 
Sbjct: 80  RGGEDGSMQGLLECLGIPYTGSGILASALAMDKLRTKQVWHSLGIPT-PRHAVLASEADC 138

Query: 120 --SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
             +   +  P ++KP   GSS+G+  +     +      +SS++   Q+L+EQ++ G E 
Sbjct: 139 ISAATELGFPLIVKPAHEGSSIGMAKVNSLPELTAAWKDASSYD--SQVLVEQWITGPEF 196

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           T   + D  L    +  P + FY Y+ KY + ++ + +P  +     KE+  L   A +A
Sbjct: 197 TIATLRDQVLPPIALGTPHT-FYDYDAKYVANDTQYRIPCGLDAAKEKELMDLTAKACEA 255

Query: 238 IGCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +G  G  R+D + D   +  FW LE+N  PGMT  S+ P  A  AG  F++L++
Sbjct: 256 LGIAGWGRADVMQDADGQ--FWFLEVNTAPGMTDHSLVPMAARAAGLDFQQLVV 307


>gi|58583447|ref|YP_202463.1| D-alanine--D-alanine ligase [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|58428041|gb|AAW77078.1| D-alanine-D-alanine ligase B [Xanthomonas oryzae pv. oryzae
           KACC10331]
          Length = 318

 Score =  172 bits (436), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 114/300 (38%), Positives = 168/300 (56%), Gaps = 12/300 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG SSEREVSL+SG     AL   G     +D   ++   L   + D  FNVLHG
Sbjct: 19  VAVLLGGTSSEREVSLNSGSNVLEALRARGVDAQPVDGIAALAKALVAQQFDRVFNVLHG 78

Query: 61  NFG--EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV--PVCPSILVNRF 116
           + G  EDG+VQ ++E   +PYT S +L SALSMDK+R+KQV  S G+  P    +     
Sbjct: 79  HNGGGEDGIVQGLMEAFGVPYTGSDVLGSALSMDKIRTKQVWLSLGLSTPRYARLAAGAS 138

Query: 117 TMD---SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
             D   +   +  P ++KP   GSS+G+  +  DQ+   D +  ++   G  LL+EQ ++
Sbjct: 139 AADIHVAAQQLGLPVIVKPANEGSSVGVSRVF-DQAQLEDAVTLAARYDG-ALLMEQLIE 196

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           G ELT  V+GD +L    I VPK  +Y Y  KY + ++ ++ P  +  +   ++++LA  
Sbjct: 197 GDELTVAVLGDTALPSIRI-VPKGQWYDYNAKYIAEDTQYLCPG-LEGEPEAQIRQLALD 254

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           A +A GCRG  R D + D  S +++ LE+N  PGMT  S+ P+ A   G  F E L+W V
Sbjct: 255 AFRAAGCRGWGRVDVMRDGSSGQLYLLEVNTAPGMTSHSLVPKAARQLGIDFEE-LVWRV 313


>gi|84625259|ref|YP_452631.1| D-alanine--D-alanine ligase [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|84369199|dbj|BAE70357.1| D-alanine-D-alanine ligase B [Xanthomonas oryzae pv. oryzae MAFF
           311018]
          Length = 318

 Score =  172 bits (436), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 114/300 (38%), Positives = 168/300 (56%), Gaps = 12/300 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG SSEREVSL+SG     AL   G     +D   ++   L   + D  FNVLHG
Sbjct: 19  VAVLLGGTSSEREVSLNSGSNVLEALRARGVDAQPVDGIAALAKALVAQQFDRVFNVLHG 78

Query: 61  NFG--EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV--PVCPSILVNRF 116
           + G  EDG+VQ ++E   +PYT S +L SALSMDK+R+KQV  S G+  P    +     
Sbjct: 79  HNGGGEDGIVQGLMEAFGVPYTGSDVLGSALSMDKIRTKQVWLSLGLSTPRYARLAAGAS 138

Query: 117 TMD---SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
             D   +   +  P ++KP   GSS+G+  +  DQ+   D +  ++   G  LL+EQ ++
Sbjct: 139 AADIHVAAQQLGLPVIVKPANEGSSVGVSRVF-DQAQLEDAVTLAARYDG-ALLMEQLIE 196

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           G ELT  V+GD +L    I VPK  +Y Y  KY + ++ ++ P  +  +   ++++LA  
Sbjct: 197 GDELTVAVLGDTALPSIRI-VPKGQWYDYNAKYIAEDTQYLCPG-LEGEPEAQIRQLALD 254

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           A +A GCRG  R D + D  S +++ LE+N  PGMT  S+ P+ A   G  F E L+W V
Sbjct: 255 AFRAAGCRGWGRVDVMRDGSSGQLYLLEVNTAPGMTSHSLVPKAARQLGIDFEE-LVWRV 313


>gi|167035501|ref|YP_001670732.1| D-alanine--D-alanine ligase [Pseudomonas putida GB-1]
 gi|189083045|sp|B0KFS4|DDL_PSEPG RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|166861989|gb|ABZ00397.1| D-alanine--D-alanine ligase [Pseudomonas putida GB-1]
          Length = 318

 Score =  172 bits (436), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 113/303 (37%), Positives = 165/303 (54%), Gaps = 8/303 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL SG A   AL  AG  V  IDV   +   L   + D AF +LHG
Sbjct: 20  VAVLYGGKSAEREVSLKSGAAVIDALTTAGVDVVAIDVGDDLLARLQSEEIDRAFIILHG 79

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--M 118
             GEDG +Q +LE L IPYT SGILASAL+MDK+R+KQV  S G+P     ++   +  +
Sbjct: 80  RGGEDGSMQGLLECLGIPYTGSGILASALAMDKLRTKQVWQSLGIPTPRHAVLASESDCL 139

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   +  P ++KP   GSS+G+  +   Q +      ++ ++   Q+L+EQ++ G E T
Sbjct: 140 QASTELGFPLIVKPAHEGSSIGMAKVNSAQELVAAWQDAAKYD--SQVLVEQWIHGPEFT 197

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             V+    L    +  P   FY Y+ KY + ++ + +P  +     +E+  L   A  AI
Sbjct: 198 IAVLRGQVLPPIALGTPHV-FYDYDAKYIANDTQYRIPCGLDSAKEQELIDLTARACDAI 256

Query: 239 GCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           G  G  R D + D   R  FW LE+N  PGMT  S+ P  A  AG  F++L+L ++ ++ 
Sbjct: 257 GIEGWGRLDVMQDEQGR--FWLLEVNTAPGMTDHSLVPMAARAAGLDFQQLVLAILAESV 314

Query: 298 CLR 300
             R
Sbjct: 315 ATR 317


>gi|150015470|ref|YP_001307724.1| D-alanine--D-alanine ligase [Clostridium beijerinckii NCIMB 8052]
 gi|189083037|sp|A6LQY8|DDL_CLOB8 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|149901935|gb|ABR32768.1| D-alanine--D-alanine ligase [Clostridium beijerinckii NCIMB 8052]
          Length = 301

 Score =  172 bits (436), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 99/299 (33%), Positives = 170/299 (56%), Gaps = 8/299 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGGISSERE+SL SGK+    +    ++V  I +D+   ++      D A   LHG
Sbjct: 3   IGVIMGGISSEREISLQSGKSIIENINKEKYEVLPIVIDKKEDIINKSKGIDFALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---FT 117
            FGEDG VQ++L+ L IPY+  G L+SA+ MDK  SK V+ + G+   P I + +     
Sbjct: 63  QFGEDGTVQSVLQTLGIPYSGCGPLSSAMCMDKDVSKSVLEANGIRTAPWINLRKGDNID 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            +  + +  P V+KP  GGSS+   ++K+++ I   + ++  W+   +++IE+++ G E+
Sbjct: 123 FNKINELGYPVVVKPTHGGSSVATFIVKEEKEIENCVSEAFKWDS--EVMIEKFIKGDEI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC V  +  L V  I  PK++F+ +  KY    +  ++  ++  +++KEV+++A   ++A
Sbjct: 181 TCPVYNNKMLPVIAIK-PKAEFFDFTSKYQDGGAEEIV-VELEAELHKEVEKMALETYKA 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           + C   SR D +        + LEIN  PGMT  S+ P+ AA     F EL+  +++D+
Sbjct: 239 LKCEVYSRVDMIVTEEGVP-YILEINTLPGMTKNSLIPKSAAALNIGFSELIDMIIQDS 296


>gi|313673681|ref|YP_004051792.1| d-alanine--d-alanine ligase [Calditerrivibrio nitroreducens DSM
           19672]
 gi|312940437|gb|ADR19629.1| D-alanine--D-alanine ligase [Calditerrivibrio nitroreducens DSM
           19672]
          Length = 298

 Score =  172 bits (436), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 102/292 (34%), Positives = 167/292 (57%), Gaps = 14/292 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVS-QIDVDRSVGLVLAHLKPDLAFNVLH 59
           +AVL GG+SSER+VS+ +G    +AL   GFK S  +DVD S+   L   KPD  +  LH
Sbjct: 6   IAVLYGGLSSERDVSIKTGNGIYNALLRKGFKNSFLLDVDWSLPEKLIKHKPDFCYIALH 65

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G +GEDG VQ +LE + IPY   G+ ASA+S DK+ +K+++ S  +P       + F   
Sbjct: 66  GRYGEDGTVQGLLEYMRIPYNGPGVTASAISFDKVITKKILKSVNIPTA-----DYFEYK 120

Query: 120 SQHLISP--PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
           ++   SP  P V+KP + GS++G+ ++ +D+     +  +  +++  ++++E+++ G EL
Sbjct: 121 NEQS-SPFYPCVVKPAREGSTIGVTIVYEDKEFIPAIEDAKKYDN--KIIVERFIKGKEL 177

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           T  ++ D  L +  I  PK  FY Y  KY+   + ++    +     + V+++A  A++ 
Sbjct: 178 TISIIDDLVLPIIWIK-PKKGFYDYTSKYTKGMTEYLFETGLNAKEEEMVKKVAKDAYEV 236

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           +GC G SR D ++D     V  LEIN  PGMT  S+ P  AA  G ++ EL+
Sbjct: 237 VGCEGASRVDIIYDGDIPNV--LEINTLPGMTETSLLPNAAAKYGIAYDELV 286


>gi|298488537|ref|ZP_07006567.1| D-alanine--D-alanine ligase [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
 gi|298156878|gb|EFH97968.1| D-alanine--D-alanine ligase [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
          Length = 319

 Score =  172 bits (436), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 116/303 (38%), Positives = 170/303 (56%), Gaps = 8/303 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+ER VSL+SG A   AL DAG     IDV       L   K D AF VLHG
Sbjct: 21  VAVLFGGKSAERAVSLNSGNAVLKALLDAGVDAFGIDVGDDFLQRLVSEKIDRAFIVLHG 80

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV-CPSILVNRF-TM 118
             GEDG +Q +LE LEIPYT SG+LASAL+MDK+R+KQV  S G+     ++L N    +
Sbjct: 81  RGGEDGSMQGLLECLEIPYTGSGVLASALAMDKLRTKQVWQSLGLATPLHAVLGNESDCI 140

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   +  P ++KP   GSS+G+  +     +      +S+++   Q+L+EQ++ G E T
Sbjct: 141 CAATELGFPLIVKPAHEGSSIGMAKVNSVDELIAAWKAASTYDS--QVLVEQWIQGPEFT 198

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +    L    +  P S FY Y+ KY + ++ + +P  +     +E+++LA  A  AI
Sbjct: 199 VASLRGQVLPPIGLGTPHS-FYDYDAKYLASDTQYRIPCGLGDAQEQELKQLAARACDAI 257

Query: 239 GCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           G  G +R+D + D   +  FW LE+N  PGMT  S+ P  A  AG  F++L+L ++ D+ 
Sbjct: 258 GIAGWARTDVMQDAQGK--FWLLEVNTVPGMTDHSLVPMAARAAGLDFQQLVLAILADSV 315

Query: 298 CLR 300
             R
Sbjct: 316 QAR 318


>gi|66047327|ref|YP_237168.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. syringae
           B728a]
 gi|63258034|gb|AAY39130.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. syringae
           B728a]
          Length = 319

 Score =  172 bits (436), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 115/303 (37%), Positives = 170/303 (56%), Gaps = 8/303 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+ER VSL+SG A   AL +AG     IDV       L   K D AF VLHG
Sbjct: 21  VAVLFGGKSAERAVSLNSGNAVLGALLEAGVDAFGIDVGDDFLQRLVSEKIDRAFIVLHG 80

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV-CPSILVNRF-TM 118
             GEDG +Q +LE LEIPYT SG+LASAL+MDK+R+KQV  S G+     ++L N    +
Sbjct: 81  RGGEDGTMQGLLECLEIPYTGSGVLASALAMDKLRTKQVWQSLGLATPAHAVLENESDCI 140

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   +  P ++KP   GSS+G+  +     +      +S+++   Q+L+EQ++ G E T
Sbjct: 141 CAATELGLPLIVKPAHEGSSIGMAKVNSVDELIAAWKAASTYD--SQVLVEQWIQGPEFT 198

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +    L    +  P S FY Y+ KY + ++ + +P  +     +E+++LA  A  AI
Sbjct: 199 VASLRGQVLPPIGLGTPHS-FYDYDAKYLASDTQYRIPCGLGDAQEQELKQLAARACDAI 257

Query: 239 GCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           G  G +R+D + D   +  FW LE+N  PGMT  S+ P  A  AG  F++L+L ++ D+ 
Sbjct: 258 GIAGWARTDVMQDAQGK--FWLLEVNTVPGMTDHSLVPMAARAAGLDFQQLVLAILADSV 315

Query: 298 CLR 300
             R
Sbjct: 316 QAR 318


>gi|325915633|ref|ZP_08177941.1| D-alanine--D-alanine ligase [Xanthomonas vesicatoria ATCC 35937]
 gi|325538193|gb|EGD09881.1| D-alanine--D-alanine ligase [Xanthomonas vesicatoria ATCC 35937]
          Length = 318

 Score =  172 bits (436), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 113/300 (37%), Positives = 166/300 (55%), Gaps = 12/300 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG SSEREVSL+SG     AL   G     +D   ++   L   + D  FNVLHG
Sbjct: 19  VAVLLGGTSSEREVSLNSGSNVLDALRARGVDAQPVDGIPALAQALVAGQFDRVFNVLHG 78

Query: 61  NFG--EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-SILVNRFT 117
           + G  EDG+VQ ++E   IPYT S +L SALSMDK+R+KQV  S G+P    + L    +
Sbjct: 79  HNGGGEDGIVQGLMEAFGIPYTGSNVLGSALSMDKIRTKQVWLSLGLPTPRYARLAAGVS 138

Query: 118 MDSQHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
            D  H     I  P ++KP   GSS+GI  +     +   +L ++ ++    LL+EQ ++
Sbjct: 139 ADEIHAAARQIGLPVIVKPANEGSSVGISRVFDQAQLEEAVLLAARYDGA--LLMEQLIE 196

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           G ELT  ++G+ +L    I VPK  +Y Y  KY + ++ ++ P  +  D   ++ +LA  
Sbjct: 197 GDELTVAILGETALPSIRI-VPKGQWYDYNAKYLADDTQYLCPG-LDGDAEAQIGQLALD 254

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           A +A G R   R D + D  S +++ LE+N  PGMT  S+ P+ A   G  F E L+W V
Sbjct: 255 AFRAAGARDWGRVDVMRDRSSGQLYLLEVNTAPGMTSHSLVPKAARQLGLDFEE-LVWRV 313


>gi|332095383|gb|EGJ00406.1| D-alanine--D-alanine ligase B [Shigella boydii 5216-82]
          Length = 306

 Score =  172 bits (435), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 106/303 (34%), Positives = 163/303 (53%), Gaps = 13/303 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SG    + L + G     +D        L  +     F  LHG
Sbjct: 5   IAVLLGGTSAEREVSLNSGAVVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118
             GEDG +Q +LEL+ +PYT SG++ASALS+DK+RSK +    G+PV P + + R     
Sbjct: 65  RGGEDGTLQGMLELMGLPYTGSGVMASALSIDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124

Query: 119 ---DSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
              D Q      +  P ++KP + GSS+G+  +  + ++  D L+  ++ H +++LIE++
Sbjct: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMTKVVAENALQ-DALR-LAFQHDEEVLIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L    I  P   FY YE KY S  + +  PA +       +Q L 
Sbjct: 183 LSGPEFTVAILGEEILPSIRIQ-PAGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A   +GC+G  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 242 LKAWTTLGCKGWGRIDVMLDS-DGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300

Query: 292 MVE 294
           ++E
Sbjct: 301 ILE 303


>gi|157147484|ref|YP_001454803.1| D-alanine--D-alanine ligase [Citrobacter koseri ATCC BAA-895]
 gi|157084689|gb|ABV14367.1| hypothetical protein CKO_03283 [Citrobacter koseri ATCC BAA-895]
          Length = 306

 Score =  172 bits (435), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 106/303 (34%), Positives = 168/303 (55%), Gaps = 13/303 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+ER+VSL+SG A  + L + G     ID       +L  +     F  LHG
Sbjct: 5   IAVLLGGTSAERDVSLNSGAAVLAGLREGGVDAHPIDPKEVDVTLLKSMGFQKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR----- 115
             GEDG +Q +L+L+ +PYT SG++ASA+SMDK+RSK +    G+PV P + + R     
Sbjct: 65  RGGEDGTLQGMLDLIGLPYTGSGVMASAISMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124

Query: 116 -FTMDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
             + D+   IS    P ++KP + GSS+G+  + ++ ++      + ++ H +++LIE++
Sbjct: 125 GLSDDALTRISALGLPLIVKPSREGSSVGMSKVVEENAL--QAALALAFQHDEEVLIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L    I  P   FY YE KY S  + +  PA +  +    +Q L 
Sbjct: 183 LSGPEFTVAILGEEILPSIRIQ-PAGTFYDYEAKYLSDETQYFCPAGLEEEQEAILQTLV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A  A+GC+G  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 242 LKAWTALGCKGWGRIDVMLDS-DGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300

Query: 292 MVE 294
           ++E
Sbjct: 301 ILE 303


>gi|187479348|ref|YP_787373.1| D-alanine--D-alanine ligase [Bordetella avium 197N]
 gi|123513903|sp|Q2KVG4|DDL_BORA1 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|115423935|emb|CAJ50487.1| D-alanine--D-alanine ligase [Bordetella avium 197N]
          Length = 317

 Score =  172 bits (435), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 113/309 (36%), Positives = 171/309 (55%), Gaps = 20/309 (6%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VL GG S+EREVSL SG     AL  AG      D        L     +  F  LHG
Sbjct: 8   VGVLYGGRSAEREVSLMSGAGVHEALRSAGVDAHLFDTGLQDLTALEAAGFERVFIALHG 67

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG +Q  LELL IPYT SG+ ASAL+MDK+ +K+V    G+P  P+        D+
Sbjct: 68  RFGEDGAIQGALELLNIPYTGSGVTASALAMDKIMTKRVWLQHGLPT-PAF--EEIDSDT 124

Query: 121 QHLISP-----PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS-SSWNHGDQ-LLIEQYVD 173
           +    P     P ++KP   GS++GI  +    +   D+ Q+ ++ +H D+ +L EQ+V 
Sbjct: 125 ELRRVPDRLGLPLILKPPHEGSTVGITKV----AACADMEQAYAAASHFDEVVLAEQFVR 180

Query: 174 GIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           G ELT  ++G      +L V EI  P  + Y Y+ KY +  + +  PA +P+ + +++++
Sbjct: 181 GRELTVALLGSGRNARALPVIEIVAPDGN-YDYQNKYFTDVTQYFCPADLPVGVAEQIEK 239

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           +A  A++A+GC G  R+DF+ D  ++  + LE+N  PGMT  S+ P  A   G S+ EL 
Sbjct: 240 IAVQAYRALGCEGWGRADFILDGQNQP-WLLEMNTSPGMTSHSLVPMAARAVGMSYAELC 298

Query: 290 LWMVEDASC 298
           + ++ DASC
Sbjct: 299 VAILADASC 307


>gi|30061659|ref|NP_835830.1| D-alanine--D-alanine ligase [Shigella flexneri 2a str. 2457T]
 gi|30039901|gb|AAP15635.1| D-alanine-D-alanine ligase B [Shigella flexneri 2a str. 2457T]
          Length = 306

 Score =  172 bits (435), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 107/303 (35%), Positives = 164/303 (54%), Gaps = 13/303 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SG A  + L + G     +D        L  +     F  LHG
Sbjct: 5   IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118
             GEDG +Q +LEL+ +PYT SG++ASALS+DK+RSK +    G+PV P + + R     
Sbjct: 65  PGGEDGTLQGMLELMGLPYTGSGVMASALSIDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124

Query: 119 ---DSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
              D Q      +  P ++KP + GSS+G+  +  + ++  D L+  ++ H +++LIE++
Sbjct: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQ-DALR-LAFQHDEEVLIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L    I  P   FY YE KY S  + +  PA +       +Q L 
Sbjct: 183 LSGPEFTVAILGEEILPSIRIQ-PSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A   +GC+G  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 242 LKAWTTLGCKGWGRIDVMLDS-DGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300

Query: 292 MVE 294
           ++E
Sbjct: 301 ILE 303


>gi|134095969|ref|YP_001101044.1| D-alanine--D-alanine ligase [Herminiimonas arsenicoxydans]
 gi|190359141|sp|A4G8T6|DDL_HERAR RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|133739872|emb|CAL62923.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetase B)
           (D-Ala-D-Ala ligase B) [Herminiimonas arsenicoxydans]
          Length = 334

 Score =  172 bits (435), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 115/307 (37%), Positives = 165/307 (53%), Gaps = 15/307 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-VDRSVGLVLAHLKPDLAFNVLH 59
           + VL GG S+EREVSL SGK   +AL+  G      D  +RS+   LA  K D  F  LH
Sbjct: 15  VGVLFGGRSAEREVSLMSGKGVLAALQSKGVDAHAFDPAERSLA-ELAAEKFDRVFIALH 73

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G++GEDG +Q  LE L IPYT  G++ASA+SMDK+ +K+V  S GVP     +++  T  
Sbjct: 74  GSYGEDGTLQGALEQLGIPYTGPGVMASAISMDKVMTKRVCLSHGVPTPRFTVLDAETTS 133

Query: 120 SQHLISP------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
           +  L S       P ++K    GS++GI  ++  + +       + +     +L+EQ+V 
Sbjct: 134 AAQLQSVAAEFGLPLMLKAPHEGSTIGIAKVETAEGMQAGFDLCAKYEA--VVLVEQFVK 191

Query: 174 GIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           G ELT  V+G      +L + EI  P+ + Y YE KY S ++ ++ PA       K VQ 
Sbjct: 192 GRELTVPVIGSGRNARALPIVEIRAPQGN-YDYEHKYFSNDTEYLCPAPFDEAFTKRVQA 250

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           LA  A  A+GC G SR DF+      + F LEIN  PGMT  S+ P  A  AG  + +L 
Sbjct: 251 LAVSAFNAVGCTGWSRVDFMVRASDNEPFLLEINTSPGMTSHSLVPMSAKVAGTGYEDLC 310

Query: 290 LWMVEDA 296
           + ++  A
Sbjct: 311 IEILRSA 317


>gi|59801867|ref|YP_208579.1| D-alanine--D-alanine ligase [Neisseria gonorrhoeae FA 1090]
 gi|194099345|ref|YP_002002445.1| D-alanine--D-alanine ligase [Neisseria gonorrhoeae NCCP11945]
 gi|239999602|ref|ZP_04719526.1| D-alanine--D-alanine ligase [Neisseria gonorrhoeae 35/02]
 gi|240014777|ref|ZP_04721690.1| D-alanine--D-alanine ligase [Neisseria gonorrhoeae DGI18]
 gi|240017225|ref|ZP_04723765.1| D-alanine--D-alanine ligase [Neisseria gonorrhoeae FA6140]
 gi|240081138|ref|ZP_04725681.1| D-alanine--D-alanine ligase [Neisseria gonorrhoeae FA19]
 gi|240113350|ref|ZP_04727840.1| D-alanine--D-alanine ligase [Neisseria gonorrhoeae MS11]
 gi|240118590|ref|ZP_04732652.1| D-alanine--D-alanine ligase [Neisseria gonorrhoeae PID1]
 gi|240121300|ref|ZP_04734262.1| D-alanine--D-alanine ligase [Neisseria gonorrhoeae PID24-1]
 gi|240124133|ref|ZP_04737089.1| D-alanine--D-alanine ligase [Neisseria gonorrhoeae PID332]
 gi|240126251|ref|ZP_04739137.1| D-alanine--D-alanine ligase [Neisseria gonorrhoeae SK-92-679]
 gi|254494317|ref|ZP_05107488.1| D-alanylalanine synthetase [Neisseria gonorrhoeae 1291]
 gi|268595413|ref|ZP_06129580.1| D-alanine-D-alanine ligase [Neisseria gonorrhoeae 35/02]
 gi|268597249|ref|ZP_06131416.1| D-alanine-D-alanine ligase [Neisseria gonorrhoeae FA19]
 gi|268599424|ref|ZP_06133591.1| D-alanylalanine synthetase [Neisseria gonorrhoeae MS11]
 gi|268604301|ref|ZP_06138468.1| D-alanylalanine synthetase [Neisseria gonorrhoeae PID1]
 gi|268682758|ref|ZP_06149620.1| D-alanylalanine synthetase [Neisseria gonorrhoeae PID332]
 gi|268684832|ref|ZP_06151694.1| D-alanylalanine synthetase [Neisseria gonorrhoeae SK-92-679]
 gi|293398492|ref|ZP_06642670.1| D-alanine-D-alanine ligase [Neisseria gonorrhoeae F62]
 gi|75355611|sp|Q5F6M0|DDL_NEIG1 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|229485968|sp|B4RQC3|DDL_NEIG2 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|59718762|gb|AAW90167.1| putative D-alanine--D-alanine ligase [Neisseria gonorrhoeae FA
           1090]
 gi|193934635|gb|ACF30459.1| D-alanylalanine synthetase [Neisseria gonorrhoeae NCCP11945]
 gi|226513357|gb|EEH62702.1| D-alanylalanine synthetase [Neisseria gonorrhoeae 1291]
 gi|268548802|gb|EEZ44220.1| D-alanine-D-alanine ligase [Neisseria gonorrhoeae 35/02]
 gi|268551037|gb|EEZ46056.1| D-alanine-D-alanine ligase [Neisseria gonorrhoeae FA19]
 gi|268583555|gb|EEZ48231.1| D-alanylalanine synthetase [Neisseria gonorrhoeae MS11]
 gi|268588432|gb|EEZ53108.1| D-alanylalanine synthetase [Neisseria gonorrhoeae PID1]
 gi|268623042|gb|EEZ55442.1| D-alanylalanine synthetase [Neisseria gonorrhoeae PID332]
 gi|268625116|gb|EEZ57516.1| D-alanylalanine synthetase [Neisseria gonorrhoeae SK-92-679]
 gi|291610963|gb|EFF40060.1| D-alanine-D-alanine ligase [Neisseria gonorrhoeae F62]
 gi|317164854|gb|ADV08395.1| D-alanine--D-alanine ligase [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 304

 Score =  172 bits (435), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 112/304 (36%), Positives = 166/304 (54%), Gaps = 17/304 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSERE+SL SG A  +AL+  G      D   +    L       AFN+LHG
Sbjct: 7   VAVLMGGFSSEREISLDSGTAILNALKSKGIDAYAFDPKETPLSELKERGFQTAFNILHG 66

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-SILVNRFTMD 119
            +GEDG VQ  LELL IPYT SG+ ASA+ MDK R K +  + G+PV   ++L +    D
Sbjct: 67  TYGEDGAVQGALELLGIPYTGSGVAASAIGMDKYRCKLIWQALGLPVPEFAVLYDDTDFD 126

Query: 120 S-QHLISPPYVIKPLKGGSSLGIIVIKKDQSIP-----LDLLQSSSWNHGDQLLIEQYVD 173
           + +  +  P  +KP   GSS+G++ +K+   +      L  LQ        +++ E+++ 
Sbjct: 127 AVEEKLGLPMFVKPAAEGSSVGVVKVKEKGRLKSVYEELKHLQG-------EIIAERFIG 179

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR-LAF 232
           G E +C V+    L    I +P ++FY YE KY+  ++ +  P++   +  + + R LA 
Sbjct: 180 GGEYSCPVLNGKGLPGIHI-IPATEFYDYEAKYNRDDTIYQCPSEDLTEAEESLMRELAV 238

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
              QAIG  G  R DFL D    K++ LEIN  PGMT  S+ P+ AA  G  F +L + +
Sbjct: 239 RGAQAIGAEGCVRVDFLKD-TDGKLYLLEINTLPGMTGHSLVPKSAAVTGVGFADLCIEI 297

Query: 293 VEDA 296
           ++ A
Sbjct: 298 LKAA 301


>gi|289624984|ref|ZP_06457938.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. aesculi str.
           NCPPB3681]
 gi|289647042|ref|ZP_06478385.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. aesculi str.
           2250]
 gi|330868716|gb|EGH03425.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. aesculi str.
           0893_23]
          Length = 319

 Score =  172 bits (435), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 115/303 (37%), Positives = 171/303 (56%), Gaps = 8/303 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+ER VSL+SG A   AL +AG     IDV       L   K D AF VLHG
Sbjct: 21  VAVLFGGKSAERAVSLNSGNAVLGALLEAGVDAFGIDVGDDFLQRLVSEKIDRAFIVLHG 80

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV-CPSILVNRF-TM 118
             GEDG +Q +LE LEIPYT SG+LASAL+MDK+R+KQV  S G+     ++L N    +
Sbjct: 81  RGGEDGTMQGLLECLEIPYTGSGVLASALAMDKLRTKQVWQSLGLATPLHAVLENESDCI 140

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   +  P ++KP   GSS+G+  +     +      +S+++   Q+L+EQ++ G E T
Sbjct: 141 CAVTELGLPLIVKPAHEGSSIGMAKVNSVDELIAAWKAASTYD--SQVLVEQWIQGPEFT 198

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +    L    +  P S FY Y+ KY + ++ + +P  +     +E+++LA  A +AI
Sbjct: 199 VASLRGQVLPPIGLGTPHS-FYDYDAKYLASDTQYRIPCGLGDAQEQELKQLAARACEAI 257

Query: 239 GCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           G  G +R+D + D   +  FW LE+N  PGMT  S+ P  A  AG  F++L+L ++ D+ 
Sbjct: 258 GIAGWARTDVMQDAQGK--FWLLEVNTVPGMTDHSLVPMAARAAGLDFQQLVLAILADSV 315

Query: 298 CLR 300
             R
Sbjct: 316 QAR 318


>gi|240116303|ref|ZP_04730365.1| D-alanine--D-alanine ligase [Neisseria gonorrhoeae PID18]
 gi|240128803|ref|ZP_04741464.1| D-alanine--D-alanine ligase [Neisseria gonorrhoeae SK-93-1035]
 gi|260439880|ref|ZP_05793696.1| D-alanine--D-alanine ligase [Neisseria gonorrhoeae DGI2]
 gi|268601970|ref|ZP_06136137.1| D-alanylalanine synthetase [Neisseria gonorrhoeae PID18]
 gi|268687185|ref|ZP_06154047.1| D-alanylalanine synthetase [Neisseria gonorrhoeae SK-93-1035]
 gi|291043156|ref|ZP_06568879.1| D-alanylalanine synthetase [Neisseria gonorrhoeae DGI2]
 gi|268586101|gb|EEZ50777.1| D-alanylalanine synthetase [Neisseria gonorrhoeae PID18]
 gi|268627469|gb|EEZ59869.1| D-alanylalanine synthetase [Neisseria gonorrhoeae SK-93-1035]
 gi|291012762|gb|EFE04745.1| D-alanylalanine synthetase [Neisseria gonorrhoeae DGI2]
          Length = 304

 Score =  172 bits (435), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 110/299 (36%), Positives = 166/299 (55%), Gaps = 7/299 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSERE+SL SG A  +AL+  G      D   +    L       AFN+LHG
Sbjct: 7   VAVLMGGFSSEREISLDSGTAILNALKSKGIDAYAFDPKETPLSELKERGFQTAFNILHG 66

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-SILVNRFTMD 119
            +GEDG VQ  LELL IPYT SG+ ASA+ MDK R K +  + G+PV   ++L +    D
Sbjct: 67  TYGEDGAVQGALELLGIPYTGSGVAASAIGMDKYRCKLIWQALGLPVPEFAVLYDDTDFD 126

Query: 120 S-QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           + +  +  P  +KP   GSS+G++ +K+   +   + +      G +++ E+++ G E +
Sbjct: 127 AVEEKLGLPMFVKPAAEGSSVGVVKVKEKGRLK-SIYEELKHLQG-EIIAERFIGGGEYS 184

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR-LAFLAHQA 237
           C V+    L    I +P ++FY YE KY+  ++ +  P++   +  + + R LA    QA
Sbjct: 185 CPVLNGKGLPGIHI-IPATEFYDYEAKYNRDDTIYQCPSEDLTEAEESLMRELAVRGAQA 243

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           IG  G  R DFL D    K++ LEIN  PGMT  S+ P+ AA  G  F +L + +++ A
Sbjct: 244 IGAEGCVRVDFLKD-TDGKLYLLEINTLPGMTGHSLVPKSAAVTGVGFADLCIEILKAA 301


>gi|332283267|ref|YP_004415178.1| D-alanine--D-alanine ligase [Pusillimonas sp. T7-7]
 gi|330427220|gb|AEC18554.1| D-alanine--D-alanine ligase [Pusillimonas sp. T7-7]
          Length = 315

 Score =  172 bits (435), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 115/308 (37%), Positives = 167/308 (54%), Gaps = 18/308 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VL GG S+EREVSL SG+    AL   G      D  R   + L +   D  F  LHG
Sbjct: 8   VGVLYGGRSAEREVSLMSGQGVFEALRSVGVDAHLFDTGRYTLVDLINAGFDRVFIALHG 67

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119
            +GEDG +Q  LEL+ +PYT SG LAS+L+MDK+ +KQV    G+P  P   + R   D 
Sbjct: 68  RYGEDGTLQGALELMGLPYTGSGTLASSLAMDKIMTKQVWLQQGLPT-PRYAILRPDTDL 126

Query: 120 --SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS---SWNHGDQLLIEQYVDG 174
                ++  P +IKP   GS+LG+  +       LD L+ +   +  +   +L EQ++ G
Sbjct: 127 ASVAAVLDLPLIIKPPHEGSTLGVTKVDG-----LDSLREAYQLAARYDADVLAEQFIVG 181

Query: 175 IELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            ELT  ++G      +L V EI  P  + Y YE KY S ++ ++ PAK+   +   ++++
Sbjct: 182 RELTVALLGGGGSARALPVIEIVAPDGN-YDYEHKYISNDTQYICPAKLDDALSASIRQI 240

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A  A+ A+GC G  R+DF+ D  + K + LEIN  PGMT  S+ P  A   G S+ EL L
Sbjct: 241 AEQAYVALGCEGWGRADFMLDE-AGKPWLLEINTSPGMTSHSLVPMAAKADGMSYAELCL 299

Query: 291 WMVEDASC 298
            ++  ASC
Sbjct: 300 EILSTASC 307


>gi|319786254|ref|YP_004145729.1| D-alanine/D-alanine ligase [Pseudoxanthomonas suwonensis 11-1]
 gi|317464766|gb|ADV26498.1| D-alanine/D-alanine ligase [Pseudoxanthomonas suwonensis 11-1]
          Length = 317

 Score =  172 bits (435), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 110/299 (36%), Positives = 166/299 (55%), Gaps = 9/299 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSEREVSL SG+    AL   G     +D   ++   LA  K D  FN+LHG
Sbjct: 20  VAVLMGGTSSEREVSLDSGRNVLEALRARGIDAQPVDGIPALVEALAQEKFDRVFNILHG 79

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GE+G+VQ +L+ L +PYT +G+L SAL++DK+R+KQV  S  +P    + ++R    +
Sbjct: 80  GDGENGVVQGLLQALGVPYTGAGVLGSALTLDKIRTKQVWLSLNLPTPRYVRLDRGADAA 139

Query: 121 QHL-----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175
                   +  P ++KP   GSS+G+  +  +    LD   + +  +  ++L+EQ V G 
Sbjct: 140 AVRAAARSLGLPVIVKPSCEGSSVGVSRVMDEDG--LDEAIALAARYPGEMLMEQMVVGD 197

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
           ELT GV+GD +L    I VP+ ++Y Y  KY + ++ ++ P     D  + V+ LA  A 
Sbjct: 198 ELTVGVLGDIALPSIRI-VPRGEWYDYNAKYIAEDTQYLCPGLEGEDELR-VRELALAAF 255

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           +A GC G  R D +    +   + LE+N  PGMT  S+ P+ AA  G  F EL   ++E
Sbjct: 256 RAAGCSGWGRIDVMRSRATGAPYLLEVNTAPGMTSHSLVPKAAAQLGIGFEELCWRILE 314


>gi|78046388|ref|YP_362563.1| D-alanine--D-alanine ligase [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
 gi|325925685|ref|ZP_08187063.1| D-alanine--D-alanine ligase [Xanthomonas perforans 91-118]
 gi|78034818|emb|CAJ22463.1| D-alanine--D-alanine ligase B [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|325543901|gb|EGD15306.1| D-alanine--D-alanine ligase [Xanthomonas perforans 91-118]
          Length = 318

 Score =  172 bits (435), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 109/300 (36%), Positives = 164/300 (54%), Gaps = 12/300 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG SSEREVSL+SG     AL   G     +D   ++   L   + D  FNVLHG
Sbjct: 19  VAVLLGGTSSEREVSLNSGSNVLEALRARGVDAQPVDGIPALAKALVAQQFDRVFNVLHG 78

Query: 61  NFG--EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV-----CPSILV 113
           + G  EDG+VQ ++E   +PYT S +L SALSMDK+R+KQV  S G+         +   
Sbjct: 79  HNGGGEDGIVQGLMEAFGVPYTGSDVLGSALSMDKIRTKQVWLSLGLSTPRYARLAAGAS 138

Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
                 +   I  P ++KP   GSS+G+  +     +   +  ++ ++    LL+EQ ++
Sbjct: 139 AEAIHAAAQQIGLPVIVKPANEGSSVGVSRVFDQAQLEEAVTLAARYDGA--LLMEQLIE 196

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           G ELT  V+GD +L    I VPK  +Y Y  KY + ++ ++ P  +  +   ++++LA  
Sbjct: 197 GDELTVAVLGDTALPSIRI-VPKGQWYDYNAKYIAEDTQYLCPG-LEGEAETQIRQLALD 254

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           A +A GCRG  R D + D  S +++ LE+N  PGMT  S+ P+ A   G  F E L+W V
Sbjct: 255 AFRAAGCRGWGRVDVMRDGSSGQLYLLEVNTAPGMTSHSLVPKAARQLGIDFEE-LVWRV 313


>gi|241664305|ref|YP_002982665.1| D-alanine--D-alanine ligase [Ralstonia pickettii 12D]
 gi|240866332|gb|ACS63993.1| D-alanine/D-alanine ligase [Ralstonia pickettii 12D]
          Length = 331

 Score =  172 bits (435), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 105/304 (34%), Positives = 163/304 (53%), Gaps = 11/304 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VLMGG S+ERE+SL SG    +AL   G      D        LA    D     LHG
Sbjct: 20  VGVLMGGRSAEREISLMSGNGVLAALRARGVDAHPFDPGLQPVADLAKQGFDRVVISLHG 79

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG +Q +LE   IPYT SG+LASAL+MDK  +K+   + G+P  P  ++     D 
Sbjct: 80  RFGEDGTIQGLLEQFGIPYTGSGVLASALAMDKEATKRQWQTHGLPT-PDFVMLHAGADW 138

Query: 121 QHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
           Q +   +  P ++KP + GSS+G+  +     +P    +++  +    ++ EQ+++G EL
Sbjct: 139 QAVADRLGLPLIVKPAREGSSIGLTKVTSVAELPAAYEKAARLDR--DVMAEQFIEGDEL 196

Query: 178 TCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           TC ++G+     +L +  I  P+++ Y Y+ KY + ++ +  PA I +D+   VQ L   
Sbjct: 197 TCPIIGEGESATALPLIRIVAPQAN-YDYQNKYFTDDTRYECPAPIAVDVAARVQALVVQ 255

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           A++ +GCRG  R+D +        F LE+N  PGMT  S+ P  A  AG S+ + +L + 
Sbjct: 256 AYRGLGCRGWGRADIMLRKSDNAPFLLEMNTSPGMTGHSLVPMGARAAGISYEDFVLQLA 315

Query: 294 EDAS 297
             AS
Sbjct: 316 ASAS 319


>gi|325275004|ref|ZP_08141000.1| D-alanine--D-alanine ligase [Pseudomonas sp. TJI-51]
 gi|324099861|gb|EGB97711.1| D-alanine--D-alanine ligase [Pseudomonas sp. TJI-51]
          Length = 318

 Score =  172 bits (435), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 112/303 (36%), Positives = 166/303 (54%), Gaps = 8/303 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL SG A   AL  AG  V  IDV   +   L + K D AF +LHG
Sbjct: 20  VAVLYGGKSAEREVSLKSGAAVIDALTSAGVDVVAIDVGDDLLDRLQNEKIDRAFIILHG 79

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--M 118
             GEDG +Q +LE L IPYT SGILASAL+MDK+R+KQV  S G+P     ++   +  +
Sbjct: 80  RGGEDGSMQGLLECLGIPYTGSGILASALAMDKLRTKQVWQSLGIPTPRHAVLASESDCL 139

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   +  P ++KP   GSS+G+  +   + +      ++ ++   Q+L+EQ++ G E T
Sbjct: 140 QASTELGFPLIVKPAHEGSSIGMAKVNSAEELIAAWQDAAQYD--SQVLVEQWIHGPEFT 197

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             V+    L    +  P   FY Y+ KY + ++ + +P  +     +E+  L   A  A+
Sbjct: 198 IAVLRGQVLPPIALGTPHV-FYDYDAKYIANDTQYRIPCGLDSAKEQELIDLTARACDAV 256

Query: 239 GCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           G  G  R D + D   R  FW LE+N  PGMT  S+ P  A  AG  F++L+L ++ ++ 
Sbjct: 257 GIEGWGRLDVMQDEQGR--FWLLEVNTAPGMTDHSLVPMAARAAGLDFQQLVLAILAESV 314

Query: 298 CLR 300
             R
Sbjct: 315 ATR 317


>gi|297250432|ref|ZP_06934039.1| D-alanine--D-alanine ligase B [Neisseria polysaccharea ATCC 43768]
 gi|296838890|gb|EFH22828.1| D-alanine--D-alanine ligase B [Neisseria polysaccharea ATCC 43768]
          Length = 343

 Score =  172 bits (435), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 116/306 (37%), Positives = 165/306 (53%), Gaps = 21/306 (6%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSERE+SL SG A  +AL+  G      D   +    L       AFN+LHG
Sbjct: 46  VAVLMGGFSSEREISLDSGTAILNALKSKGIDAHAFDPKETPLSELKERGFQTAFNILHG 105

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV----NRF 116
            +GEDG VQ  LELL IPYT SG+ ASA+ MDK R K +  + G+PV P   V    + F
Sbjct: 106 TYGEDGAVQGALELLGIPYTGSGVAASAIGMDKYRCKLIWQALGLPV-PEFAVLHEDSDF 164

Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP-----LDLLQSSSWNHGDQLLIEQY 171
               Q L  P +V KP   GSS+G++ +K+   +      L  LQ        +++ E++
Sbjct: 165 DAVEQQLGLPMFV-KPAAEGSSVGVVKVKEKGRLKSVYEELKHLQG-------EIIAERF 216

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR-L 230
           + G E +C V+    L    I +P ++FY YE KY+  ++ +  P++   +  + + R L
Sbjct: 217 IGGGEYSCPVLNGKGLPGIHI-IPATEFYDYEAKYNRDDTIYQCPSEDLTEAEESLMREL 275

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    QAIG  G  R DFL D    K++ LEIN  PGMT  S+ P+ AA  G  F +L +
Sbjct: 276 AVRGAQAIGAEGCVRVDFLKD-TDGKLYLLEINTLPGMTSHSLVPKSAAVTGVGFADLCI 334

Query: 291 WMVEDA 296
            +++ A
Sbjct: 335 EILKTA 340


>gi|253774878|ref|YP_003037709.1| D-alanine--D-alanine ligase [Escherichia coli 'BL21-Gold(DE3)pLysS
           AG']
 gi|254160214|ref|YP_003043322.1| D-alanine--D-alanine ligase [Escherichia coli B str. REL606]
 gi|297518217|ref|ZP_06936603.1| D-alanine--D-alanine ligase [Escherichia coli OP50]
 gi|300931781|ref|ZP_07147081.1| D-ala D-ala ligase [Escherichia coli MS 187-1]
 gi|242375928|emb|CAQ30609.1| D-alanine-D-alanine ligase B [Escherichia coli BL21(DE3)]
 gi|253325922|gb|ACT30524.1| D-alanine/D-alanine ligase [Escherichia coli 'BL21-Gold(DE3)pLysS
           AG']
 gi|253972115|gb|ACT37786.1| D-alanylalanine synthetase [Escherichia coli B str. REL606]
 gi|253976324|gb|ACT41994.1| D-alanylalanine synthetase [Escherichia coli BL21(DE3)]
 gi|300460441|gb|EFK23934.1| D-ala D-ala ligase [Escherichia coli MS 187-1]
 gi|323960038|gb|EGB55684.1| D-alanine-D-alanine ligase [Escherichia coli H489]
          Length = 306

 Score =  171 bits (434), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 107/303 (35%), Positives = 163/303 (53%), Gaps = 13/303 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SG A  + L + G     +D        L  +     F  LHG
Sbjct: 5   IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118
             GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK +    G+PV P + + R     
Sbjct: 65  RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124

Query: 119 ---DSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
              D Q      +  P ++KP + GSS+G+  +  + ++  D L+  ++ H +++LIE++
Sbjct: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQ-DALR-LAFQHDEEVLIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++ +  L    I  P   FY YE KY S  + +  PA +       +Q L 
Sbjct: 183 LSGPEFTVAILDEEILPSIRIQ-PSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A   +GC+G  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 242 LKAWTTLGCKGWGRIDVMLDS-DGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300

Query: 292 MVE 294
           ++E
Sbjct: 301 ILE 303


>gi|283783879|ref|YP_003363744.1| D-alanine--D-alanine ligase B [Citrobacter rodentium ICC168]
 gi|282947333|emb|CBG86878.1| D-alanine--D-alanine ligase B [Citrobacter rodentium ICC168]
          Length = 306

 Score =  171 bits (434), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 107/306 (34%), Positives = 165/306 (53%), Gaps = 19/306 (6%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL+SG A  + L + G     +D        L  +     F  LHG
Sbjct: 5   IAVLFGGTSAEREVSLNSGAAVLAGLREGGVDAHPVDPKEVDVTQLKAMGFQKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119
             GEDG +Q +LEL+ +PYT SG++ASA+SMDK+RSK +    G+PV P + + R   + 
Sbjct: 65  RGGEDGTLQGLLELIGLPYTGSGVMASAISMDKLRSKLLWQGAGLPVAPWVALTRAQFEK 124

Query: 120 --SQHLISP------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS---SWNHGDQLLI 168
             S+ L++       P ++KP + GSS+G+  + +      D LQS+   ++ H +++LI
Sbjct: 125 GLSEELVTQISALGLPLIVKPSREGSSVGMSKVAE-----YDALQSALALAFQHDEEVLI 179

Query: 169 EQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           E+++ G E T  ++G+  L    I  P   FY YE KY S  + +  PA +       ++
Sbjct: 180 EKWLSGPEFTVAILGEEILPTIRIQ-PAGTFYDYEAKYLSDETQYFCPAGLETAQEALLR 238

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
            L   A   +GC+G  R D + D    + + LE N  PGMT  S+ P  A   G SF +L
Sbjct: 239 DLVRKAWSTLGCKGWGRIDAMLDS-DGQFYLLEANTSPGMTSHSLVPMAAREKGLSFSQL 297

Query: 289 LLWMVE 294
           ++ ++E
Sbjct: 298 VVRILE 303


>gi|323935144|gb|EGB31511.1| D-alanine-D-alanine ligase [Escherichia coli E1520]
          Length = 306

 Score =  171 bits (434), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 107/303 (35%), Positives = 163/303 (53%), Gaps = 13/303 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SG A  + L + G     +D        L  +     F  LHG
Sbjct: 5   IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118
             GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK +    G+PV   + + R     
Sbjct: 65  RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAAWVALTRAEFEK 124

Query: 119 ---DSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
              D Q      +  P ++KP + GSS+G+  +  + ++  D L+  ++ H +++LIE++
Sbjct: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQ-DALR-LAFQHDEEVLIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L    I  P   FY YE KY S  + +  PA +       +Q L 
Sbjct: 183 LSGPEFTVAILGEEILPSIRIQ-PSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A   +GC+G  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 242 LKAWTTLGCKGWGRIDVMLDS-DGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300

Query: 292 MVE 294
           ++E
Sbjct: 301 ILE 303


>gi|206579559|ref|YP_002240436.1| D-alanine--D-alanine ligase B [Klebsiella pneumoniae 342]
 gi|206568617|gb|ACI10393.1| D-alanine--D-alanine ligase B [Klebsiella pneumoniae 342]
          Length = 306

 Score =  171 bits (434), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 110/300 (36%), Positives = 165/300 (55%), Gaps = 15/300 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV-LAHLKPDLAFNVLH 59
           +AVL GG S+EREVSL+SG A  + L + G     +D  R + +  L +L    AF  LH
Sbjct: 5   IAVLFGGTSAEREVSLNSGAAVLAGLREGGVDAHPVD-PRDIDITQLKNLGFKKAFIALH 63

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--FT 117
           G  GEDG +Q +L+L+++PYT SG++ASALSMDK+RSK +    G+PV P + + R  FT
Sbjct: 64  GRGGEDGTLQGLLDLIQLPYTGSGVMASALSMDKLRSKWLWQGAGLPVAPWVALTRAQFT 123

Query: 118 MD-----SQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                   Q +  +  P +IKP + GSS+G+   K  +S  L    + ++ H D++L+E+
Sbjct: 124 AGLSAAVEQQIAALGLPVIIKPSREGSSVGM--SKVSESCDLQSALALAFQHDDEVLVEK 181

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
           ++ G E T  ++G+  L    I    + FY YE KY S  + +  P         ++Q L
Sbjct: 182 WLSGPEFTVAIVGEEILPSIRIQAAGT-FYDYEAKYLSDETQYFCPGFEDPARESDIQSL 240

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
              A   +GC+G  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++
Sbjct: 241 VLKAWNVLGCKGWGRIDVMLDS-DGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVV 299


>gi|254362460|ref|ZP_04978568.1| D-alanine--D-alanine ligase [Mannheimia haemolytica PHL213]
 gi|153094052|gb|EDN74964.1| D-alanine--D-alanine ligase [Mannheimia haemolytica PHL213]
          Length = 303

 Score =  171 bits (434), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 105/298 (35%), Positives = 169/298 (56%), Gaps = 9/298 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG+S EREVSL+SG A  +AL+  G+ V  ID        L        FN+LHG
Sbjct: 8   IAVLFGGVSQEREVSLNSGAAVTAALKSLGYNVEGIDTKEFPIEKLKEKGIQRVFNILHG 67

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF-TMD 119
             GE+G++Q  LE + IPYT  G++ASA+++DK R+K + ++ G+P    ++V R   +D
Sbjct: 68  GIGENGVLQGALEQMGIPYTGCGVMASAVTLDKFRTKLLWNAVGLPTADMVVVQRGQAVD 127

Query: 120 SQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
              +I+    P  +K    GSS+G+  +K  + +   + ++  ++    +L+E+++ G E
Sbjct: 128 FDQIIAKLGLPVFVKSSCEGSSVGVFKVKTKEELAPAIHEALKFD--SIVLVEEFLAGNE 185

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
            +  V+    L   ++ +P  +FY Y  KY S N+ +V+PA +  +   EV +L   A+ 
Sbjct: 186 YSVPVLDGQVLPAVQV-IPDGEFYDYHAKYVSDNTQYVVPA-LNDERQAEVAKLVKAAYD 243

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            +GCRG SR D + D    K   +E+N  PGMT  SIFP+ AA  G SF +L+  ++E
Sbjct: 244 VVGCRGWSRIDVMEDG-EGKFRLVEVNTNPGMTSHSIFPKSAATVGISFEKLVERVLE 300


>gi|225848999|ref|YP_002729163.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB)
           (D-Ala-D-Ala ligase B) [Sulfurihydrogenibium azorense
           Az-Fu1]
 gi|225644020|gb|ACN99070.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB)
           (D-Ala-D-Ala ligase B) [Sulfurihydrogenibium azorense
           Az-Fu1]
          Length = 303

 Score =  171 bits (434), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 102/294 (34%), Positives = 163/294 (55%), Gaps = 12/294 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-VDRSVGLV-LAHLKPDLAFNVL 58
           +A+L GG S ERE+S+ SGKA   AL+  G+     D V+R   L  +   KPDLAF  L
Sbjct: 5   IALLYGGYSREREISIKSGKAVEGALQRLGYTYKVFDPVEREKFLEEIVDYKPDLAFIAL 64

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-SILVNRFT 117
           HG  GEDG +Q++LE L IPYT S    S + MDK+ +K  +    +     S  +N   
Sbjct: 65  HGKGGEDGTIQSLLEFLGIPYTGSDPKTSMICMDKVLTKMYLEKFNINTPKWSFFLN--- 121

Query: 118 MDSQHLISP--PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175
           ++      P  P V+K    GSS+G+ ++         +     +   +++L+EQ++ G 
Sbjct: 122 IEDALSFYPEFPVVVKAPNEGSSIGVYIVNNQDEYKKAV--EDVFKLDEKVLVEQFIKGR 179

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
           ELT G++ D   D+ E+ V +  FY Y+ KY +  + ++ PA++P ++YK VQ + +  +
Sbjct: 180 ELTVGILDDEVFDIVEVVVEEG-FYDYQNKYITGKTKYICPAQLPPEVYKTVQDIGYKTY 238

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           +++ C+G +R D + D  S   + LE+N  PGMT  S+ P+ AA  G SF +L+
Sbjct: 239 KSLNCKGQARVDIILD-YSLTPYVLEVNTVPGMTEFSLLPKAAAVKGISFDQLV 291


>gi|21230201|ref|NP_636118.1| D-alanine--D-alanine ligase [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66769809|ref|YP_244571.1| D-alanine--D-alanine ligase [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|188993024|ref|YP_001905034.1| D-alanine--D-alanine ligase [Xanthomonas campestris pv. campestris
           str. B100]
 gi|39931166|sp|Q8PCJ8|DDLB_XANCP RecName: Full=D-alanine--D-alanine ligase B; AltName:
           Full=D-Ala-D-Ala ligase B; AltName: Full=D-alanylalanine
           synthetase B
 gi|21111739|gb|AAM40042.1| D-alanine-D-alanine ligase B [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66575141|gb|AAY50551.1| D-alanine-D-alanine ligase B [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|167734784|emb|CAP52994.1| D-alanine-D-alanine ligase B [Xanthomonas campestris pv.
           campestris]
          Length = 318

 Score =  171 bits (434), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 114/301 (37%), Positives = 166/301 (55%), Gaps = 14/301 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG SSEREVSL+SG     AL   G     +D   ++   L   + D  FNVLHG
Sbjct: 19  VAVLLGGTSSEREVSLNSGSNVLDALRARGVDAQPVDGIPALAQALVAQRFDRVFNVLHG 78

Query: 61  NFG--EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
           + G  EDG+VQ ++E   +PYT S +L SALSMDK+R+KQV  S G+   P         
Sbjct: 79  HNGGGEDGIVQGLMEAFGVPYTGSNVLGSALSMDKIRTKQVWLSLGLS-TPRYARLAAGA 137

Query: 119 DSQHL------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
            +Q +      I  P ++KP   GSS+G+  +  DQ+  LD   + +  +   LL+EQ +
Sbjct: 138 SAQQIHAAAEQIGLPVIVKPANEGSSVGVSRV-FDQA-QLDEAVTLAARYDGALLMEQLI 195

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
           +G ELT  V+GD +L    I VPK  +Y Y  KY + ++ ++ P  +  D   ++ +LA 
Sbjct: 196 EGDELTVAVLGDVALPSIRI-VPKGQWYDYNAKYIAEDTQYLCPG-LDGDAEAQIGQLAL 253

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
            A +A GC G  R D + D  + +++ LE+N  PGMT  S+ P+ A   G  F E L+W 
Sbjct: 254 DAFRAAGCSGWGRVDVMRDGSTGQLYLLEVNTAPGMTSHSLVPKAARQLGIDF-EALVWR 312

Query: 293 V 293
           V
Sbjct: 313 V 313


>gi|119718908|ref|YP_925873.1| D-alanine--D-alanine ligase [Nocardioides sp. JS614]
 gi|119539569|gb|ABL84186.1| D-alanine--D-alanine ligase [Nocardioides sp. JS614]
          Length = 323

 Score =  171 bits (434), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 109/317 (34%), Positives = 167/317 (52%), Gaps = 32/317 (10%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62
           VL GG+S ER+VSL SG+  A AL   G +V++ DVD S+   L   +PD    +LHG  
Sbjct: 13  VLAGGLSHERDVSLRSGRRVAEALRATGLEVTERDVDASLLATLRDERPDCVVPMLHGET 72

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI----------- 111
           GEDG ++ ILELL +PY  +   A  ++ DK  +K VV+  GV    S+           
Sbjct: 73  GEDGAIREILELLGVPYVGAPPAACRVAFDKPVAKAVVARAGVLTPESVCLPHETFRELG 132

Query: 112 -------LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164
                  LV+R  +        P ++KP + GS+LG  V++  + +P  ++  S++ +GD
Sbjct: 133 AGAVMAALVDRLGL--------PLMVKPTRSGSALGCTVVRTAEQLPAAMV--SAFAYGD 182

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAV---PKSDFYSYELKYSSLNSTHVLPAKIPL 221
             L+E++V G+E+   V+ D S      AV   P    Y Y  +Y++  +  V PA +  
Sbjct: 183 VALLERFVPGMEVAVPVVDDGSGARALPAVAIQPDGGVYDYTARYTAGATEFVTPAPLSE 242

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYA 281
           ++  EV R+A LAH+ +G R +SRSD + D   R V++LE+NV PG T  S  P     A
Sbjct: 243 ELAAEVARVALLAHEVLGLRDVSRSDLIIDHEGR-VWFLEVNVAPGFTETSTVPLAIQAA 301

Query: 282 GYSFRELLLWMVEDASC 298
           G    ++   MV+ A+ 
Sbjct: 302 GLDLGKVCASMVQAAAA 318


>gi|261493994|ref|ZP_05990500.1| D-alanine--D-alanine ligase [Mannheimia haemolytica serotype A2
           str. BOVINE]
 gi|261496952|ref|ZP_05993319.1| D-alanine--D-alanine ligase [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|261307388|gb|EEY08724.1| D-alanine--D-alanine ligase [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|261310340|gb|EEY11537.1| D-alanine--D-alanine ligase [Mannheimia haemolytica serotype A2
           str. BOVINE]
          Length = 303

 Score =  171 bits (434), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 105/298 (35%), Positives = 169/298 (56%), Gaps = 9/298 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG+S EREVSL+SG A  +AL+  G+ V  ID        L        FN+LHG
Sbjct: 8   IAVLFGGVSQEREVSLNSGAAVTAALKSLGYNVEGIDTKEFPIEKLKEKGIQRVFNILHG 67

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF-TMD 119
             GE+G++Q  LE + IPYT  G++ASA+++DK R+K + ++ G+P    ++V R   +D
Sbjct: 68  GIGENGVLQGALEQMGIPYTGCGVMASAVTLDKFRTKLLWNAVGLPTADMVVVQRGQVVD 127

Query: 120 SQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
              +I+    P  +K    GSS+G+  +K  + +   + ++  ++    +L+E+++ G E
Sbjct: 128 FDQIIAKLGLPVFVKSSCEGSSVGVFKVKTKEELAPAIHEALKFD--SIVLVEEFLAGNE 185

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
            +  V+    L   ++ +P  +FY Y  KY S N+ +V+PA +  +   EV +L   A+ 
Sbjct: 186 YSVPVLDGQVLPAVQV-IPDGEFYDYHAKYVSDNTQYVVPA-LNDERQAEVAKLVKAAYD 243

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            +GCRG SR D + D    K   +E+N  PGMT  SIFP+ AA  G SF +L+  ++E
Sbjct: 244 VVGCRGWSRIDVMEDG-EGKFRLVEVNTNPGMTSHSIFPKSAATVGISFEKLVERVLE 300


>gi|269101957|ref|ZP_06154654.1| hypothetical D-alanine-D-alanine ligase B [Photobacterium damselae
           subsp. damselae CIP 102761]
 gi|268161855|gb|EEZ40351.1| hypothetical D-alanine-D-alanine ligase B [Photobacterium damselae
           subsp. damselae CIP 102761]
          Length = 303

 Score =  171 bits (434), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 107/302 (35%), Positives = 171/302 (56%), Gaps = 12/302 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL-VLAHLKPDLAFNVLH 59
           + VL GG SSEREVSL SG    +A+E  G +   +D  R + L +L   K D  F  LH
Sbjct: 3   IGVLYGGDSSEREVSLKSGTRIIAAIESLGHEAIHLD-PRYIDLSMLGFYKLDKVFIALH 61

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF--T 117
           G  GE G VQ++L++L+IPY  SG+LASA+S++K+++K++  + G+   P +LV +    
Sbjct: 62  GGMGESGHVQSLLDILQIPYIGSGVLASAISLNKLKTKEIWQANGLITAPWVLVQKTMPQ 121

Query: 118 MDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
           +D   L S    P V+KPL  G S+G  V K D  + L     +++ +  ++L+EQ++ G
Sbjct: 122 VDIMALCSELTFPVVVKPLNQGCSIG--VAKADNEVQLWDALLAAFEYDTEVLVEQFIVG 179

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
            E TC V+   +L V +I     +F+ +  K+ + ++T+  P+ +     + +Q     A
Sbjct: 180 REYTCAVLNGEALPVVQIC--SEEFFDWNAKFGTQSATYHCPSDLTAIEEQTMQETILAA 237

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           +QA+GCRG  R D L       V+ +E+N  PGMT  S+FP  AA  G S+  L+  +++
Sbjct: 238 YQALGCRGWGRIDVLLTE-HNDVYLIEMNTIPGMTERSVFPMAAAQVGLSYEALIEQLLD 296

Query: 295 DA 296
            A
Sbjct: 297 HA 298


>gi|187735167|ref|YP_001877279.1| D-alanine/D-alanine ligase [Akkermansia muciniphila ATCC BAA-835]
 gi|187425219|gb|ACD04498.1| D-alanine/D-alanine ligase [Akkermansia muciniphila ATCC BAA-835]
          Length = 311

 Score =  171 bits (434), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 112/302 (37%), Positives = 169/302 (55%), Gaps = 16/302 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFK-VSQIDVDRSVGLVLAHLKPDLAFNVLH 59
           +A+L+GG  +EREVSL SG +   AL  AGF  V+++DV       L     +LA+N++H
Sbjct: 10  IALLLGGPGAEREVSLVSGNSVYDALCRAGFTDVTKVDV-HGPDFRLPE-GTELAYNIIH 67

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRF 116
           G FGEDG +QAILE   +PYT +G  +SAL  +K  SK+V    GVP   + ++   N  
Sbjct: 68  GTFGEDGTLQAILEERGVPYTGAGSRSSALCFNKSESKKVFLEAGVPTPHAEILDCSNGI 127

Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
            M S  L   P+VIKP   GSS+G+ ++++ + + L  ++ +   HG  +L+E+++ G E
Sbjct: 128 VMPSLPL---PFVIKPPCEGSSVGVHIVRRQEDV-LPAMEEAV-THGTTVLVEEFIQGKE 182

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLN----STHVLPAKIPLDIYKEVQRLAF 232
           LT G++   +L V  I  P+S FY    KY  +N    + ++ PA +P +    VQ  A 
Sbjct: 183 LTVGILDGKALPVIHIC-PRSGFYDLSNKYPWMNMGGGTDYICPADLPEETAANVQEAAL 241

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
            A++A G     R D L        F LEIN  PGMTP S+ P+ AA +G+ + +L   +
Sbjct: 242 KAYKAAGVEVYGRVDVLLREEDGAPFVLEINTIPGMTPSSLLPKAAAASGWPYEDLCEKI 301

Query: 293 VE 294
            E
Sbjct: 302 AE 303


>gi|33151977|ref|NP_873330.1| D-alanine--D-alanine ligase [Haemophilus ducreyi 35000HP]
 gi|39930851|sp|Q7VMY2|DDL_HAEDU RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|33148199|gb|AAP95719.1| D-alanine-D-alanine ligase B [Haemophilus ducreyi 35000HP]
          Length = 303

 Score =  171 bits (434), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 106/299 (35%), Positives = 168/299 (56%), Gaps = 11/299 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S EREVSL SG A   AL+  G+ V  ID        L        FN+LHG
Sbjct: 8   IAVLYGGTSQEREVSLHSGAAVTEALKSLGYNVEGIDTKDIAIEKLKEKGIQRVFNILHG 67

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF-TMD 119
             GE+G++Q  LE + IPYT  G++ASA+++DK R+K + ++ G+P    ++V R   +D
Sbjct: 68  GIGENGVLQGALEQMGIPYTGCGVMASAITLDKFRTKLLWNAVGLPTADMVVVQRGQAID 127

Query: 120 SQHLI---SPPYVIKPLKGGSSLGIIVIK-KDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175
              +I   S P  +KP   GSS+G+  +K K++ +P     +++      +L+E+++ G 
Sbjct: 128 INQIIAKLSLPVFVKPSSEGSSVGVFKVKTKEELLP---AITAALEFDTIVLVEEFLTGA 184

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
           E +  V+    L   +I +P  +FY Y  KY S  + +++PA +  +   EV ++   A+
Sbjct: 185 EYSVPVLDGEVLPAVQI-IPDGEFYDYHAKYLSDKTQYIVPA-LTNERQAEVAKIVKAAY 242

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             +GCRG SR D + D  ++    +E+N  PGMT  SIFP+ AA  G SF +L+  ++E
Sbjct: 243 DVVGCRGWSRIDVMEDQ-NQNFRLVEVNTNPGMTSHSIFPKSAATMGISFEKLVERVLE 300


>gi|283468508|emb|CAP18778.1| putative D-ala D-ala ligase [Akkermansia muciniphila]
          Length = 316

 Score =  171 bits (434), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 112/302 (37%), Positives = 169/302 (55%), Gaps = 16/302 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFK-VSQIDVDRSVGLVLAHLKPDLAFNVLH 59
           +A+L+GG  +EREVSL SG +   AL  AGF  V+++DV       L     +LA+N++H
Sbjct: 15  IALLLGGPGAEREVSLVSGNSVYDALCRAGFTDVTKVDV-HGPDFRLPE-GTELAYNIIH 72

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRF 116
           G FGEDG +QAILE   +PYT +G  +SAL  +K  SK+V    GVP   + ++   N  
Sbjct: 73  GTFGEDGTLQAILEERGVPYTGAGSRSSALCFNKSESKKVFLEAGVPTPHAEILDCSNGI 132

Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
            M S  L   P+VIKP   GSS+G+ ++++ + + L  ++ +   HG  +L+E+++ G E
Sbjct: 133 VMPSLPL---PFVIKPPCEGSSVGVHIVRRQEDV-LPAMEEAV-THGTTVLVEEFIQGKE 187

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLN----STHVLPAKIPLDIYKEVQRLAF 232
           LT G++   +L V  I  P+S FY    KY  +N    + ++ PA +P +    VQ  A 
Sbjct: 188 LTVGILDGKALPVIHIC-PRSGFYDLSNKYPWMNMGGGTDYICPADLPEETAANVQEAAL 246

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
            A++A G     R D L        F LEIN  PGMTP S+ P+ AA +G+ + +L   +
Sbjct: 247 KAYKAAGVEVYGRVDVLLREEDGAPFVLEINTIPGMTPSSLLPKAAAASGWPYEDLCEKI 306

Query: 293 VE 294
            E
Sbjct: 307 AE 308


>gi|91776618|ref|YP_546374.1| D-alanine--D-alanine ligase [Methylobacillus flagellatus KT]
 gi|122985407|sp|Q1GZ04|DDL_METFK RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|91710605|gb|ABE50533.1| D-alanine--D-alanine ligase [Methylobacillus flagellatus KT]
          Length = 302

 Score =  171 bits (434), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 115/300 (38%), Positives = 161/300 (53%), Gaps = 16/300 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S EREVSL SG A  +AL   G      D        LA    D  F  LHG
Sbjct: 8   VAVLLGGKSGEREVSLKSGAAVLAALRRNGVDAHAFDPAERALSELAGF--DRVFIALHG 65

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG +Q  LEL+ IPYT SG++AS++ MDK R+K +  + GV V P   +   T DS
Sbjct: 66  RYGEDGTIQGALELMGIPYTGSGVMASSVGMDKWRTKLLWRAAGV-VTPDFEL--VTADS 122

Query: 121 -----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI-EQYVDG 174
                +  +  P  +KP   GSS+GI  +K    +      ++     D L+I EQ+V G
Sbjct: 123 NFDAIERKLGLPLFVKPANEGSSIGISKVKAAGGLQAAYALAAK---SDPLVIAEQFVGG 179

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
            E T G++G A+L V  I VP ++FY YE KY   ++ ++ P  +   + ++++  A  A
Sbjct: 180 GEYTVGILGGAALPVIRI-VPANEFYDYEAKYLRDDTQYLCPCGLDASLEEQIKAEALQA 238

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            + +G RG  R DFL D   R  F LE+N  PGMT  S+ P  A   G  F EL+L ++E
Sbjct: 239 FRIVGGRGWGRVDFLMDEAGRHYF-LEVNTSPGMTDHSLVPMGAKAVGLGFDELVLSILE 297


>gi|163855004|ref|YP_001629302.1| D-alanine--D-alanine ligase [Bordetella petrii DSM 12804]
 gi|190359114|sp|A9I4V9|DDL_BORPD RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|163258732|emb|CAP41031.1| D-alanine-D-alanine ligase [Bordetella petrii]
          Length = 326

 Score =  171 bits (434), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 116/309 (37%), Positives = 165/309 (53%), Gaps = 20/309 (6%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VL GG S+ER+VSL SGK    AL  AG      D        LA    D  F  LHG
Sbjct: 18  VGVLYGGRSAERDVSLMSGKGVHQALLSAGVDAHLFDTGERTLAELAAAGFDRVFIALHG 77

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG +Q  LELL +PYT SG +AS+LSMDK+ +K+V    G+   P+  V    +D+
Sbjct: 78  RYGEDGTLQGALELLGLPYTGSGPMASSLSMDKIMTKRVWLQHGLRT-PAFEV----LDA 132

Query: 121 QHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
           Q  +         P ++KP   GS++GI  +     +     Q++ ++  D++L EQ++ 
Sbjct: 133 QAELRTVPDRLGLPLILKPPHEGSTVGITKVAGYSDMKEGYAQAAKFD--DEVLAEQFIA 190

Query: 174 GIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           G ELT  V+G      +L V EI  P  + Y YE KY S  + +  PA +P  +  EV  
Sbjct: 191 GRELTVAVLGTGAAAHALPVIEIVAPGGN-YDYEHKYFSDETQYFCPADLPDAVAAEVAD 249

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           LA  A++A+GC G  R DF+ D  +R  + LE N  PGMT  S+ P  A   G S+ EL 
Sbjct: 250 LAVRAYRALGCAGWGRIDFMLDADNRP-WLLEANTSPGMTSHSLVPMAAKAIGMSYAELC 308

Query: 290 LWMVEDASC 298
           + +V +A+C
Sbjct: 309 VSIVSEAAC 317


>gi|300938487|ref|ZP_07153227.1| D-ala D-ala ligase [Escherichia coli MS 21-1]
 gi|300456556|gb|EFK20049.1| D-ala D-ala ligase [Escherichia coli MS 21-1]
          Length = 306

 Score =  171 bits (433), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 107/303 (35%), Positives = 163/303 (53%), Gaps = 13/303 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SG A  + L +       +D        L  +     F  LHG
Sbjct: 5   IAVLLGGTSAEREVSLNSGAAVLAGLREGCIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118
             GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK +    G+PV P + + R     
Sbjct: 65  RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124

Query: 119 ---DSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
              D Q      +  P ++KP + GSS+G+  +  + ++  D L+  ++ H +++LIE++
Sbjct: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQ-DALR-LAFQHDEEVLIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L    I  P   FY YE KY S  + +  PA +       +Q L 
Sbjct: 183 LSGPEFTVAILGEEILPSIRIQ-PSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A   +GC+G  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 242 LKAWTTLGCKGWGRIDVMLDS-DGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300

Query: 292 MVE 294
           ++E
Sbjct: 301 ILE 303


>gi|149910629|ref|ZP_01899267.1| D-alanylalanine synthetase [Moritella sp. PE36]
 gi|149806357|gb|EDM66332.1| D-alanylalanine synthetase [Moritella sp. PE36]
          Length = 312

 Score =  171 bits (433), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 107/295 (36%), Positives = 157/295 (53%), Gaps = 10/295 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL SG A  + L  AG     +D        L       AF  LHG
Sbjct: 14  VAVLFGGHSAEREVSLKSGAAVTAGLLRAGVDAHALDTAEYDVHQLGRDGFTHAFIALHG 73

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP------VCPSILVN 114
             GEDG++Q  LE L IPYT S +L +AL+MDK+R+KQ+  S G+P      V P     
Sbjct: 74  RGGEDGVMQGALEQLGIPYTGSRVLGAALAMDKIRTKQIWQSQGLPTALYRVVTPINFNT 133

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
               D    +  P +IKP K GSS+G+   K      L+   ++++ + +++L+EQ+++G
Sbjct: 134 TIASDIIADLGSPVIIKPAKEGSSIGM--AKVHNVAELETAVTAAFAYDNEILVEQWIEG 191

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
            E T  ++GD  L V ++  P + FY Y+ KY S  + ++ PA I  +  +++Q  A  A
Sbjct: 192 PEFTVAILGDEVLPVIQLKTPNT-FYDYQAKYQSNTTEYLCPAPITDEQRQQLQAYALKA 250

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
             A+   G  R D + D   +    LE+N  PGMT  S+ P  A  AGY+F  L+
Sbjct: 251 FHAVAAEGWGRVDAMLDAQGQFQL-LEVNTVPGMTEKSLVPMAANAAGYNFDSLV 304


>gi|108763447|ref|YP_633878.1| D-alanine--D-alanine ligase [Myxococcus xanthus DK 1622]
 gi|108467327|gb|ABF92512.1| D-alanine--D-alanine ligase [Myxococcus xanthus DK 1622]
          Length = 326

 Score =  171 bits (433), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 107/292 (36%), Positives = 165/292 (56%), Gaps = 9/292 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VLMGG   ERE+SL +G+A  +ALE  G +V++I     +   L   + D+AF  LHG
Sbjct: 5   VGVLMGGWGEEREISLKTGEAVVAALESRGHQVTRIFAGPGLDRALRAAELDVAFVALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR----F 116
             GEDG VQ +LELLE+PYT SG+LASAL+M+K  +K+      +       V R     
Sbjct: 65  RMGEDGRVQGLLELLELPYTGSGVLASALAMNKPFAKRFFRLHNLATPHGYTVAREDAWR 124

Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
            +     +  P V+KP  GGSS+G+ ++++ +++   + Q+S +  G + L+E+YV G E
Sbjct: 125 ALALHGDLGFPCVVKPACGGSSMGLALVREPEALAFAVAQASRF--GGEALVERYVAGRE 182

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +T G++G   L   E+A P+  F  ++ KY    + +  P ++       V+ LA  A++
Sbjct: 183 VTVGILGGQVLGSCEVATPREGF-DFDAKYKG-GAAYFCPPRLSPTRVANVEALALAAYR 240

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           A+GCRG +R D +       V  LE+N  PG TP S+ P++AA AG  F  L
Sbjct: 241 ALGCRGQARVDLMCSDTENDVV-LEVNTLPGFTPTSLLPKIAARAGLDFAAL 291


>gi|302036135|ref|YP_003796457.1| d-alanine-d-alanine ligase [Candidatus Nitrospira defluvii]
 gi|300604199|emb|CBK40531.1| D-alanine-D-alanine ligase [Candidatus Nitrospira defluvii]
          Length = 332

 Score =  171 bits (433), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 103/307 (33%), Positives = 162/307 (52%), Gaps = 15/307 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VLMGG SSEREVSL +G+A   +L  +G+    IDV   +   L     ++ F  LHG
Sbjct: 17  IGVLMGGQSSEREVSLKTGEAVYRSLVRSGYDAVAIDVGPDLSKTLQEQAVEIGFLALHG 76

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q  LE L IPYT SG+ ASA+ M K+ +K  +++ G+PV    +V R    S
Sbjct: 77  PGGEDGAIQGFLETLGIPYTGSGVRASAIGMHKVVTKTELAAQGIPVPRGTVVLRGMAPS 136

Query: 121 QHLI------SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
            + +        P V+KP   GS++G+ +++K       L  +  ++  ++ ++E ++ G
Sbjct: 137 LNRVLSTCKLKLPVVVKPASQGSTIGVTIVRKPSQWKEALRTAHRYD--EEAMVEAFIPG 194

Query: 175 IELTCGVMGD-----ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
            E+T  ++G        L   EI  P   FY +  KY    + ++ PA +   + +++++
Sbjct: 195 HEVTVSLLGGPDGVVTGLPAVEIVAP-DGFYDFSAKYEKGRTQYLCPAPLSAAVTRQIKQ 253

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
            A   +QA+GC G +R DF   P   K F LEIN  PGMT  S+ P  A  AG S+  L 
Sbjct: 254 FAIRTYQALGCSGAARVDFRVTPKG-KPFVLEINTVPGMTETSLLPMAAGKAGLSYDALT 312

Query: 290 LWMVEDA 296
             +++ A
Sbjct: 313 ERILQSA 319


>gi|238893072|ref|YP_002917806.1| D-alanine--D-alanine ligase [Klebsiella pneumoniae NTUH-K2044]
 gi|238545388|dbj|BAH61739.1| D-alanylalanine synthetase [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
          Length = 306

 Score =  171 bits (433), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 109/300 (36%), Positives = 162/300 (54%), Gaps = 15/300 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV-LAHLKPDLAFNVLH 59
           +AVL GG S+EREVSL+SG A  + L + G     +D  R V +  L       AF  LH
Sbjct: 5   IAVLFGGTSAEREVSLNSGAAVLAGLREGGVDAHPVD-PRDVDITQLKKQGFKKAFIALH 63

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---- 115
           G  GEDG +Q +LEL+++PYT SG++ASA+SMDK+RSK +    G+PV P + + R    
Sbjct: 64  GRGGEDGTLQGLLELIQLPYTGSGVMASAISMDKLRSKWLWQGAGLPVAPWVALTRAQFA 123

Query: 116 --FTMDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
              + D +  I+    P +IKP + GSS+G+   K  +S  L    + ++ H D++L+E+
Sbjct: 124 AGLSTDVEQQIAALGLPVIIKPSREGSSVGM--SKVSESCDLASALALAFQHDDEVLVEK 181

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
           ++ G E T  ++G+  L    I    + FY YE KY S  + +  P          +Q L
Sbjct: 182 WLSGPEFTVAIVGEEILPSIRIQAAGT-FYDYEAKYLSDETQYFCPGFKDPARESAIQNL 240

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
              A   +GC+G  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++
Sbjct: 241 VLKAWNVLGCKGWGRIDVMLDS-DGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVV 299


>gi|328952241|ref|YP_004369575.1| D-alanine--D-alanine ligase [Desulfobacca acetoxidans DSM 11109]
 gi|328452565|gb|AEB08394.1| D-alanine--D-alanine ligase [Desulfobacca acetoxidans DSM 11109]
          Length = 309

 Score =  171 bits (433), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 106/303 (34%), Positives = 176/303 (58%), Gaps = 13/303 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSV-GLVLAHLKPDLAFNVLH 59
           +A+L GG SSEREVSL SG     AL+ A + + + D    +  L+      D+A  ++H
Sbjct: 6   LALLSGGKSSEREVSLKSGGQVFEALDKAKYDIYRYDPQTDLRQLINDAPNLDVALIIMH 65

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF-TM 118
           G +GEDG +Q +L+LL +PY  SG++ASAL+M+K  SK +    G+ V  ++  +R   +
Sbjct: 66  GRWGEDGTIQGLLDLLGLPYQGSGVMASALAMNKELSKTLYRQAGLKVPRAVFFSRQDAI 125

Query: 119 DSQHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175
           D + L   +  P VIKP+  GSS+G+ V +    +   + ++ +++   ++L+E+++ G+
Sbjct: 126 DPRALEAAVGLPAVIKPVNEGSSIGVTVARHLDQLGAGIGEALAYDR--RVLVEEFISGM 183

Query: 176 ELTCGVMGDAS---LDVTEIAVPKSD-FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           E+T GV+G+ +   L + EI   KS  F++YE KY    +  ++PA++  ++   VQ   
Sbjct: 184 EVTAGVLGNDALLPLPLVEIVPDKSHPFFNYEAKYLPGATEEIVPARLSPEMTIRVQECG 243

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             AH+A+GC G SR+D +      +++ LE N  PGMT  S+FP+ A   G  F  LL  
Sbjct: 244 LTAHRALGCWGYSRTDTIVR--DGEIYVLETNTIPGMTATSLFPQAARAMGLDFPALLDR 301

Query: 292 MVE 294
           +VE
Sbjct: 302 LVE 304


>gi|312959059|ref|ZP_07773578.1| D-alanylalanine synthetase [Pseudomonas fluorescens WH6]
 gi|311286829|gb|EFQ65391.1| D-alanylalanine synthetase [Pseudomonas fluorescens WH6]
          Length = 322

 Score =  171 bits (433), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 111/293 (37%), Positives = 165/293 (56%), Gaps = 8/293 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL SG A  +AL+ AG     IDV       L   K D AF +LHG
Sbjct: 20  VAVLFGGKSAEREVSLKSGNAVLAALQSAGVNAFGIDVGDDFLARLQAEKIDRAFIILHG 79

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-SILVNR-FTM 118
             GEDG +Q +LE   IPYT SGILASAL+MDK+R+KQV  S G+P    S+L +    +
Sbjct: 80  RGGEDGSMQGLLECAGIPYTGSGILASALAMDKLRTKQVWHSLGIPTPRHSVLCSEDDCI 139

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   +  P ++KP   GSS+G+  +     + +D  +++S  +  Q+L+EQ++ G E T
Sbjct: 140 SAAKELGLPLIVKPAHEGSSIGMAKVNSAAEL-IDAWKAAS-TYDSQVLVEQWIQGPEYT 197

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +    L    +  P + FY Y+ KY + ++ + +P  +     +E+  L   A +A+
Sbjct: 198 IATLRGQVLPPIALGTPHT-FYDYDAKYVASDTQYRIPCGLDATKEQELMDLTAKACEAL 256

Query: 239 GCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           G  G +R+D + D   +  FW LE+N  PGMT  S+ P  A  AG  F++L+L
Sbjct: 257 GIAGWARADVMQD--DQGNFWFLEVNTAPGMTDHSLVPMAARAAGLDFQQLVL 307


>gi|308388626|gb|ADO30946.1| D-alanine--D-alanine ligase B [Neisseria meningitidis alpha710]
 gi|325130850|gb|EGC53583.1| D-alanine--D-alanine ligase B [Neisseria meningitidis OX99.30304]
          Length = 304

 Score =  171 bits (433), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 114/307 (37%), Positives = 169/307 (55%), Gaps = 23/307 (7%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD---LAFNV 57
           +AVLMGG SSERE+SL SG A  +AL+  G      D   +    L+ LK      AFN+
Sbjct: 7   VAVLMGGFSSEREISLDSGTAILNALKSKGIDAYAFDPKETP---LSELKAQGFQTAFNI 63

Query: 58  LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-SILVNRF 116
           LHG +GEDG VQ  LELL IPYT SG+ ASA+ MDK R K +  + G+PV   ++L +  
Sbjct: 64  LHGTYGEDGAVQGALELLGIPYTGSGVAASAIGMDKYRCKLIWQALGLPVPEFAVLHDDT 123

Query: 117 TMDS-QHLISPPYVIKPLKGGSSLGIIVIKKDQSIP-----LDLLQSSSWNHGDQLLIEQ 170
             D+ +  +  P  +KP   GSS+G++ +K+   +      L  LQ        +++ E+
Sbjct: 124 DFDAVEEKLGLPMFVKPAAEGSSVGVVKVKEKGRLKSVYEELKHLQG-------EIIAER 176

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR- 229
           ++ G E +C V+    L    I +P ++FY YE KY+  ++ +  P++   +  + + R 
Sbjct: 177 FIGGGEYSCPVLNGKGLPGIHI-IPATEFYDYEAKYNRDDTIYQCPSEDLTEAEESLMRE 235

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           LA    QAIG  G  R DFL D    K++ LEIN  PGMT  S+ P+ AA  G  F +L 
Sbjct: 236 LAVRGAQAIGAEGCVRVDFLKD-TDGKLYLLEINTLPGMTSHSLVPKSAAVTGVGFADLC 294

Query: 290 LWMVEDA 296
           + +++ A
Sbjct: 295 IEILKTA 301


>gi|53729117|ref|ZP_00348323.1| COG1181: D-alanine-D-alanine ligase and related ATP-grasp enzymes
           [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
 gi|126207508|ref|YP_001052733.1| D-alanine--D-alanine ligase [Actinobacillus pleuropneumoniae L20]
 gi|165975478|ref|YP_001651071.1| D-alanine--D-alanine ligase [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
 gi|190149289|ref|YP_001967814.1| D-alanine--D-alanine ligase [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|303250499|ref|ZP_07336696.1| D-alanine--D-alanine ligase [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|307244821|ref|ZP_07526920.1| D-alanine--D-alanine ligase [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|307249219|ref|ZP_07531216.1| D-alanine--D-alanine ligase [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|307251541|ref|ZP_07533448.1| D-alanine--D-alanine ligase [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|307253775|ref|ZP_07535629.1| D-alanine--D-alanine ligase [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|307256041|ref|ZP_07537829.1| D-alanine--D-alanine ligase [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
 gi|307260471|ref|ZP_07542166.1| D-alanine--D-alanine ligase [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
 gi|307262602|ref|ZP_07544232.1| D-alanine--D-alanine ligase [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
 gi|166198470|sp|A3MY92|DDL_ACTP2 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|190359107|sp|B0BRH9|DDL_ACTPJ RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|229485852|sp|B3GZL0|DDL_ACTP7 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|126096300|gb|ABN73128.1| D-alanine--D-alanine ligase [Actinobacillus pleuropneumoniae
           serovar 5b str. L20]
 gi|165875579|gb|ABY68627.1| D-alanine-D-alanine ligase B [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
 gi|189914420|gb|ACE60672.1| D-alanine--D-alanine ligase [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|302650487|gb|EFL80646.1| D-alanine--D-alanine ligase [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|306854266|gb|EFM86472.1| D-alanine--D-alanine ligase [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|306858743|gb|EFM90802.1| D-alanine--D-alanine ligase [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|306861005|gb|EFM93011.1| D-alanine--D-alanine ligase [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|306863259|gb|EFM95199.1| D-alanine--D-alanine ligase [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|306865463|gb|EFM97358.1| D-alanine--D-alanine ligase [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
 gi|306869874|gb|EFN01656.1| D-alanine--D-alanine ligase [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
 gi|306872025|gb|EFN03739.1| D-alanine--D-alanine ligase [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
          Length = 303

 Score =  171 bits (433), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 108/299 (36%), Positives = 167/299 (55%), Gaps = 11/299 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG+S EREVSL+SG A   AL+  G+ V  ID        L        FN+LHG
Sbjct: 8   IAVLFGGVSQEREVSLNSGAAVTEALKSLGYNVEGIDTKDFPIEKLKEKGIQRVFNILHG 67

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF-TMD 119
             GE+G++Q  LE + IPYT  G++ASA+++DK R+K +  + G+P    ++V R   +D
Sbjct: 68  GIGENGVLQGALEQMGIPYTGCGVMASAVTLDKFRTKLMWQAVGLPTADMVVVRRGEAVD 127

Query: 120 SQHLISP---PYVIKPLKGGSSLGIIVIKK-DQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175
           S+ +I+    P  +KP   GSS+G+  +K  +Q +P       +      +L+E ++ G 
Sbjct: 128 SEQIIAKLGLPVFVKPSSEGSSVGVTKVKTVEQLLP---AVEEALKFDSIVLVEAFLAGK 184

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
           E +  V+    L   +I +P+ +FY Y  KY S N+ +++PA +  D   EV  L   A+
Sbjct: 185 EYSVPVLDGQVLPAVQI-IPEGEFYDYHAKYISDNTQYLVPA-LSDDRQAEVAELVKAAY 242

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           + +GCRG SR D + D  +     +E+N  PGMT  SIFP+ AA  G  F +L+  ++E
Sbjct: 243 EVVGCRGWSRIDVMEDA-NGHFNLVEVNTCPGMTSHSIFPKSAATVGIPFEKLVERVLE 300


>gi|331645202|ref|ZP_08346313.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB)
           (D-Ala-D-Ala ligase B) [Escherichia coli M605]
 gi|330909939|gb|EGH38449.1| D-alanine--D-alanine ligase B [Escherichia coli AA86]
 gi|331045959|gb|EGI18078.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB)
           (D-Ala-D-Ala ligase B) [Escherichia coli M605]
          Length = 306

 Score =  171 bits (433), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 106/303 (34%), Positives = 165/303 (54%), Gaps = 13/303 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SG A  + L + G     +D        L  +     F  LHG
Sbjct: 5   IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117
             GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK +    G+PV P + + R     
Sbjct: 65  RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124

Query: 118 -MDSQHL-----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
            ++ + L     +  P ++KP + GSS+G+  +  + ++  D L+  ++ H +++LIE++
Sbjct: 125 GLNDKQLAEISSLGLPVIVKPSREGSSVGMSKVVAENALQ-DALR-LAFQHDEEVLIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L    I  P   FY YE KY S  + +  PA +       +Q L 
Sbjct: 183 LSGPEFTVTILGEEILPSIRIQ-PAGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A   +GC+G  R D + D    + + LE N  PGMT  S+ P  A  A  SF +L++ 
Sbjct: 242 LKAWTTLGCKGWGRIDVMLDS-DGQFYLLEANTSPGMTSHSLVPMAARQADMSFSQLVVR 300

Query: 292 MVE 294
           ++E
Sbjct: 301 ILE 303


>gi|261338914|ref|ZP_05966772.1| hypothetical protein ENTCAN_05112 [Enterobacter cancerogenus ATCC
           35316]
 gi|288318739|gb|EFC57677.1| D-alanine--D-alanine ligase B [Enterobacter cancerogenus ATCC
           35316]
          Length = 306

 Score =  171 bits (433), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 105/306 (34%), Positives = 166/306 (54%), Gaps = 13/306 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+ER+VSL+SG A  + L + G     +D        L  +  D  F  LHG
Sbjct: 5   IAVLFGGTSAERDVSLNSGAAVLAGLREGGVNAHPVDPKDVDVTQLKAMGFDKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--FTM 118
             GEDG +Q +L+L+ +PYT SG++ASA+SMDK+RSK +    G+PV P + + R  + M
Sbjct: 65  RGGEDGTLQGLLDLIGLPYTGSGVMASAISMDKLRSKLLWQGAGLPVAPWVALTRREYEM 124

Query: 119 DSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                ++        P ++KP + GSS+G+  + K   +P  L  + ++ H +++LIE++
Sbjct: 125 GLNDSVNGRIAALGLPVIVKPSREGSSVGMSKVDKAGDLPAAL--ALAFQHDEEVLIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L    I  P   FY YE KY S  + +  P+ +      +++ L 
Sbjct: 183 LSGPEYTVAMLGEEILPSIRIQ-PAGVFYDYEAKYLSDETQYFCPSGLEDQREADLRALV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A   +GCRG  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 242 LKAWTVLGCRGWGRIDVMLDG-DGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300

Query: 292 MVEDAS 297
           +++ A 
Sbjct: 301 ILDQAG 306


>gi|152968677|ref|YP_001333786.1| D-alanine--D-alanine ligase [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|150953526|gb|ABR75556.1| D-alanylalanine synthetase [Klebsiella pneumoniae subsp. pneumoniae
           MGH 78578]
          Length = 306

 Score =  171 bits (433), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 109/300 (36%), Positives = 162/300 (54%), Gaps = 15/300 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV-LAHLKPDLAFNVLH 59
           +AVL GG S+EREVSL+SG A  + L + G     +D  R V +  L       AF  LH
Sbjct: 5   IAVLFGGTSAEREVSLNSGAAVLAGLREGGVDAHPVD-PRDVDITQLKKQGFKKAFIALH 63

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---- 115
           G  GEDG +Q +LEL+++PYT SG++ASA+SMDK+RSK +    G+PV P + + R    
Sbjct: 64  GRGGEDGTLQGLLELIQLPYTGSGVMASAISMDKLRSKWLWQGAGLPVAPWVALTRAQFT 123

Query: 116 --FTMDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
              + D +  I+    P +IKP + GSS+G+   K  +S  L    + ++ H D++L+E+
Sbjct: 124 AGLSTDVEQQIAALGLPVIIKPSREGSSVGM--SKVSESCDLASALALAFQHDDEVLVEK 181

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
           ++ G E T  ++G+  L    I    + FY YE KY S  + +  P          +Q L
Sbjct: 182 WLSGPEFTVAIVGEEILPSIRIQAAGT-FYDYEAKYLSDETQYFCPGFEDPARESAIQNL 240

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
              A   +GC+G  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++
Sbjct: 241 VLKAWNVLGCKGWGRIDVMLDS-DGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVV 299


>gi|145588357|ref|YP_001154954.1| D-alanine--D-alanine ligase [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
 gi|190359204|sp|A4SV76|DDL_POLSQ RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|145046763|gb|ABP33390.1| D-alanine--D-alanine ligase [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
          Length = 337

 Score =  171 bits (433), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 109/300 (36%), Positives = 164/300 (54%), Gaps = 11/300 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VL+GG S ERE+SL SG     AL   G      D        LA  K D  F  LHG
Sbjct: 30  VGVLLGGRSGEREISLMSGNGVLQALLSKGVDAHGFDPGLRNPTELATEKFDRIFISLHG 89

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV--PVCPSILVNR-FT 117
            FGEDG +Q +LELLE+PYT SG+LASAL++DK+ +KQ+  S G+  P    +     + 
Sbjct: 90  RFGEDGTIQGLLELLELPYTGSGVLASALAIDKIATKQIWISNGLSTPEYEELTAKSDWN 149

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
              +HL   P ++KP   GSSLG+  +K  + +P     ++  +   +++ E  + G EL
Sbjct: 150 AVVKHL-GLPLIVKPAHEGSSLGLTKVKSVEELPAAYQLAAGLDK--KVIAETCIVGDEL 206

Query: 178 TCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           TC ++G      +L V +I  P+++ Y +  KY S  + ++ P  +  +I   VQ LA  
Sbjct: 207 TCPLVGQGNSAEALPVIKIIPPQAN-YDFHNKYFSDETQYLCPTGLTAEINAAVQDLALA 265

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           A+Q +GCR   R+D + D  + K + LE+N  PGMT  S+ P  A  AG  + +L+LW++
Sbjct: 266 AYQTLGCRTWGRADVMLDKKTGKPYLLEMNTSPGMTSHSLVPMAAKAAGVEYADLVLWLL 325


>gi|148549590|ref|YP_001269692.1| D-alanine--D-alanine ligase [Pseudomonas putida F1]
 gi|148513648|gb|ABQ80508.1| D-alanine--D-alanine ligase [Pseudomonas putida F1]
          Length = 318

 Score =  171 bits (432), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 113/303 (37%), Positives = 165/303 (54%), Gaps = 8/303 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL SG A   AL  AG  V  IDV   +   L   K D AF +LHG
Sbjct: 20  VAVLYGGKSAEREVSLKSGAAVIDALSTAGVDVVGIDVGDDLLARLQSEKIDRAFIILHG 79

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--M 118
             GEDG +Q +LE L IPYT SGILASAL+MDK+R+KQV  S G+P     ++   +  +
Sbjct: 80  RGGEDGSMQGLLECLGIPYTGSGILASALAMDKLRTKQVWQSLGIPTPRHAVLASESDCL 139

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   +  P ++KP   GSS+G+  +   Q +      ++ ++   Q+L+EQ++ G E T
Sbjct: 140 QASTELGFPLIVKPAHEGSSIGMAKVNSAQELVAAWQDAAKYDS--QVLVEQWIHGPEFT 197

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             V+    L    +  P   FY Y+ KY + ++ + +P  +     +E+  L   A  AI
Sbjct: 198 IAVLRGQVLPPIALGTPHV-FYDYDAKYIANDTQYRIPCGLDSVKEQELIDLTARACDAI 256

Query: 239 GCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           G  G  R D + D   +  FW LE+N  PGMT  S+ P  A  AG  F++L+L ++ ++ 
Sbjct: 257 GIEGWGRLDVMQDEQGQ--FWLLEVNTAPGMTDHSLVPMAARAAGLDFQQLVLAILAESV 314

Query: 298 CLR 300
             R
Sbjct: 315 ATR 317


>gi|330012005|ref|ZP_08307222.1| D-ala D-ala ligase protein [Klebsiella sp. MS 92-3]
 gi|328533994|gb|EGF60646.1| D-ala D-ala ligase protein [Klebsiella sp. MS 92-3]
          Length = 306

 Score =  171 bits (432), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 109/300 (36%), Positives = 162/300 (54%), Gaps = 15/300 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV-LAHLKPDLAFNVLH 59
           +AVL GG S+EREVSL+SG A  + L + G     +D  R V +  L       AF  LH
Sbjct: 5   IAVLFGGTSAEREVSLNSGAAVLAGLREGGVDAHPVD-PRDVDITQLKKQGFKKAFIALH 63

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---- 115
           G  GEDG +Q +LEL+++PYT SG++ASA+SMDK+RSK +    G+PV P + + R    
Sbjct: 64  GRGGEDGTLQGLLELIQLPYTGSGVMASAISMDKLRSKWLWQGAGLPVAPWVALTRAQFA 123

Query: 116 --FTMDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
              + D +  I+    P +IKP + GSS+G+   K  +S  L    + ++ H D++L+E+
Sbjct: 124 AGLSTDVEQQIAALGLPVIIKPSREGSSVGM--SKVSESCDLASALALAFQHDDEVLVEK 181

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
           ++ G E T  ++G+  L    I    + FY YE KY S  + +  P          +Q L
Sbjct: 182 WLSGPEFTVAIVGEEILPSIRIQAAGT-FYDYEAKYLSDETQYFCPGFEDPARESAIQNL 240

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
              A   +GC+G  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++
Sbjct: 241 VLKAWNVLGCKGWGRIDVMLDS-DGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVV 299


>gi|309783023|ref|ZP_07677742.1| D-alanine--D-alanine ligase (D-alanylalanine
           synthetase)(D-Ala-D-Ala ligase) [Ralstonia sp.
           5_7_47FAA]
 gi|308918131|gb|EFP63809.1| D-alanine--D-alanine ligase (D-alanylalanine
           synthetase)(D-Ala-D-Ala ligase) [Ralstonia sp.
           5_7_47FAA]
          Length = 331

 Score =  171 bits (432), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 105/304 (34%), Positives = 162/304 (53%), Gaps = 11/304 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VLMGG S+ERE+SL SG    +AL   G      D        LA    D     LHG
Sbjct: 20  VGVLMGGRSAEREISLMSGNGVLAALRARGVDAHPFDPGLQPVADLAKQGFDRVVISLHG 79

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG +Q +LE   IPYT SG+LASAL+MDK  +K+   + G+P  P  ++     D 
Sbjct: 80  RFGEDGTIQGLLEQFGIPYTGSGVLASALAMDKEATKRQWQTHGLPT-PDFVMLHAGADW 138

Query: 121 QHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
           Q +   +  P ++KP + GSS+G+  +     +P    +++  +    ++ EQ+++G EL
Sbjct: 139 QAVADRLGLPLIVKPAREGSSIGLTKVTSVAELPAAYEKAARLDR--DVMAEQFIEGDEL 196

Query: 178 TCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           TC ++G+     +L +  I  P+++ Y Y+ KY + ++ +  PA I  D+   VQ L   
Sbjct: 197 TCPIIGEGESATALPLIRIVAPQAN-YDYQNKYFTDDTRYECPAPIAADVAARVQALVVQ 255

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           A++ +GCRG  R+D +        F LE+N  PGMT  S+ P  A  AG S+ + +L + 
Sbjct: 256 AYRGLGCRGWGRADIMLRKSDNAPFLLEMNTSPGMTGHSLVPMGARAAGISYEDFVLQLA 315

Query: 294 EDAS 297
             AS
Sbjct: 316 ASAS 319


>gi|78484930|ref|YP_390855.1| D-alanine--D-alanine ligase [Thiomicrospira crunogena XCL-2]
 gi|123555841|sp|Q31I42|DDL_THICR RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|78363216|gb|ABB41181.1| D-alanine--D-alanine ligase [Thiomicrospira crunogena XCL-2]
          Length = 313

 Score =  171 bits (432), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 111/303 (36%), Positives = 165/303 (54%), Gaps = 22/303 (7%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG+++ER+VSL SG     AL+  G      DV     LV    K D AF  LHG
Sbjct: 18  VAVLMGGVAAERDVSLRSGAEVLKALKSEGVDAVGCDVTSVAQLVEIAQKYDRAFIALHG 77

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP------VCPSILVN 114
            +GEDG VQA+L+ L +PYT SG+ ASAL+MDK+R+K +    G+P      V PS  ++
Sbjct: 78  RWGEDGGVQAVLDSLALPYTGSGMTASALAMDKLRTKWLWKGVGLPTPAFIVVSPSRPLD 137

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS---SWNHGDQLLIEQY 171
             T D    ++ P ++KP   GSS+G+  +       LD LQ +   +  +  ++LIEQ+
Sbjct: 138 VETFD----LTFPVIVKPSHEGSSIGMRKVDT-----LDALQEAVDFAQQYDSEILIEQW 188

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E TC V+   +L + ++     DFY ++ KY S  + ++ P  + +   K +Q L 
Sbjct: 189 ITGREFTCAVLDGEALPMIQLKT-DHDFYDFDAKYQSNTTEYLCPCGLEIAEEKRIQALV 247

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWL-EINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             A  A+G R   R D + D  ++   WL EIN  PGMT  S+ P  A     SF +L+L
Sbjct: 248 LQAFDAVGARHWGRVDLMLDDQNQP--WLIEINTVPGMTDHSLVPMAAKAVDLSFSKLVL 305

Query: 291 WMV 293
            ++
Sbjct: 306 KLI 308


>gi|78355413|ref|YP_386862.1| D-alanine--D-alanine ligase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|123553397|sp|Q316H9|DDL_DESDG RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|78217818|gb|ABB37167.1| D-alanine--D-alanine ligase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 308

 Score =  171 bits (432), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 109/296 (36%), Positives = 165/296 (55%), Gaps = 9/296 (3%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSV-GLVLAHLKPDLAFNVLHGN 61
           ++ GG S ER+VSLS  +   +ALE  G +V+  D  R++ GL+ A    D AF  LHG 
Sbjct: 5   LIAGGWSEERDVSLSGARGIHAALERLGHQVTLFDPCRTLAGLLEAAQAHDFAFLNLHGQ 64

Query: 62  FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT-MDS 120
            GEDGLVQA+LE   +PY  SG   S L+++K  +K+V    G+P    + +      D 
Sbjct: 65  PGEDGLVQALLETAGVPYQGSGPAGSFLALNKAAAKEVFVRNGLPTPEWVFLPAHPGADW 124

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS--SSWNHGDQLLIEQYVDGIELT 178
           +   + P  IK   GGSSL +  +    S P +L ++    +  G + +IE  V+G+E+T
Sbjct: 125 EPPFAFPAFIKSNNGGSSLALHRV----SCPGELARALDELFTRGGEAIIEPAVEGVEVT 180

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           CGV+GD +L    I    + F+ Y  KY+   +  + PA +P ++  +V+  A  AH+A+
Sbjct: 181 CGVLGDEALPPILIRPLGAGFFDYASKYTPGQAEELCPAPLPGEVTAKVREYALRAHRAL 240

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           G RG SRSDF+  P +  +  LE+N  PGMT  S+ P+ AA  G SF  L+  ++E
Sbjct: 241 GLRGYSRSDFILTP-AGALSLLEVNTLPGMTATSLLPQEAAAVGISFDGLIGRLIE 295


>gi|320530969|ref|ZP_08032002.1| UDP-N-acetylmuramate--alanine ligase [Selenomonas artemidis F0399]
 gi|320136834|gb|EFW28783.1| UDP-N-acetylmuramate--alanine ligase [Selenomonas artemidis F0399]
          Length = 779

 Score =  171 bits (432), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 110/311 (35%), Positives = 172/311 (55%), Gaps = 15/311 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59
           + V+MGG S+E EVS  SG A   AL +  +    I+++  +    +  L+P L FN LH
Sbjct: 473 ITVVMGGPSTEAEVSRRSGAAILHALHEKNYPAVGIELNPATFAEEIKKLRPALVFNALH 532

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV--PVCPSILVNRFT 117
           G +GEDG++Q  L++L IPYT SG+ A+AL+MDK  +K++ ++ G+  P   S      T
Sbjct: 533 GKYGEDGVLQGTLDMLGIPYTGSGVRAAALTMDKTSAKRIFAAEGIATPRFRSFYAGTDT 592

Query: 118 MDSQHLI----SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
                 I    S P V+K  + GSS+G+ ++ ++  +   L    ++++G ++L+E+++ 
Sbjct: 593 GKIAEEILAAFSLPVVVKAPEQGSSIGVYIVTEEDDLRSSL--DEAFSYGGEVLVEEFIA 650

Query: 174 GIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           G ELT  V G+     +L V EI    S  Y YE KY+   S H++PA I  +   EVQ 
Sbjct: 651 GRELTVVVWGETGHAEALPVIEITT-TSGRYDYESKYTPGASAHLVPAPISPECTAEVQE 709

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           LA  A  A GC G++R D +    + K + +E+N  PGMT  S+ P+ A   G SF +L 
Sbjct: 710 LAVRAFNACGCTGVARLDVMLSE-TEKPYAIEVNSVPGMTETSLVPDAARAVGLSFPDLC 768

Query: 290 LWMVEDASCLR 300
             ++E A   R
Sbjct: 769 EKILEMAGYQR 779


>gi|300702964|ref|YP_003744566.1| d-alanine-d-alanine ligase b, affects cell division [Ralstonia
           solanacearum CFBP2957]
 gi|299070627|emb|CBJ41922.1| D-alanine-D-alanine ligase B, affects cell division [Ralstonia
           solanacearum CFBP2957]
          Length = 331

 Score =  171 bits (432), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 103/304 (33%), Positives = 162/304 (53%), Gaps = 11/304 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V++GG S+ERE+SL SG    +AL   G      D        LA          LHG
Sbjct: 20  VGVILGGRSAEREISLLSGNGVLAALRSRGVDAHPFDPGTQPVAELATQGFHRVVISLHG 79

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG +Q +LE   IPYT SG+LASAL+MDK  +K++  + G+P  P  ++     D 
Sbjct: 80  RFGEDGTIQGLLEQFGIPYTGSGVLASALAMDKEATKRLWQTHGLPT-PDFVMLHAGADW 138

Query: 121 QHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
           Q +   +  P ++KP + GSS+G+  +     +P    +++  +    ++ EQ+++G EL
Sbjct: 139 QAVADRLGLPLIVKPAREGSSIGLTKVTSVAELPAAYEKAARLDR--DVMAEQFIEGDEL 196

Query: 178 TCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           TC V+G+     +L +  I  P+++ Y Y+ KY + ++ +  PA IP D+   VQ L   
Sbjct: 197 TCAVIGEGDSTTALPLIRIVAPQAN-YDYQHKYFTDDTRYECPAPIPADVAARVQALVVQ 255

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           A++ +GCRG  R+D +        F LE+N  PGMT  S+ P  A   G S+ + +L + 
Sbjct: 256 AYRGLGCRGWGRADIMLRKHDNAPFLLEMNTSPGMTGHSLVPMAARAVGISYEDFVLQLA 315

Query: 294 EDAS 297
             AS
Sbjct: 316 ATAS 319


>gi|119944905|ref|YP_942585.1| D-alanine--D-alanine ligase [Psychromonas ingrahamii 37]
 gi|119863509|gb|ABM02986.1| D-alanine--D-alanine ligase [Psychromonas ingrahamii 37]
          Length = 306

 Score =  171 bits (432), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 104/296 (35%), Positives = 158/296 (53%), Gaps = 10/296 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL SGKA  +AL   G     ID      L L  L  D  F  LHG
Sbjct: 8   VAVLFGGHSAEREVSLRSGKAVLNALLRQGIDAYAIDPKFDDLLQLKQLNFDRVFIALHG 67

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG++Q  L  L+IPYT S +L+SA++MDK ++KQ+  S  +P     ++ +   D 
Sbjct: 68  RGGEDGVIQGFLSTLDIPYTGSDVLSSAIAMDKSKTKQIWQSLQLPTAQYRIIIKEAFDP 127

Query: 121 QHL------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
                    +S   ++KP+  GSSLG+  +   + +   L ++  ++    +L+E ++ G
Sbjct: 128 AQAEQILAGLSGIAIVKPVSEGSSLGMAKVSTAKELIKALTEAFKFDQ--TVLLETWITG 185

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
            E T  ++   +L    +    + FY Y+ KY S ++ +  P  +  +   E+ +LA  A
Sbjct: 186 QEYTVSILNGKALPAIRMHTNNT-FYDYQAKYQSTDTQYYCPCGLEQEKLAELNQLAVDA 244

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             AIGCRG  R DF+ D  S + + LE+N  PGMT  S+ P+ A  AGY F +L +
Sbjct: 245 FAAIGCRGWGRVDFMLDK-SGQWYLLEVNTVPGMTETSLVPKAAKEAGYDFDQLTI 299


>gi|188575299|ref|YP_001912228.1| D-alanine--D-alanine ligase [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188519751|gb|ACD57696.1| D-alanine--D-alanine ligase [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 318

 Score =  171 bits (432), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 112/300 (37%), Positives = 166/300 (55%), Gaps = 12/300 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG SSEREVSL+SG     AL   G     +D   ++   L   + D  FNVLHG
Sbjct: 19  VAVLLGGTSSEREVSLNSGSNVLEALRARGVDAQPVDGIAALAKALVAQQFDRVFNVLHG 78

Query: 61  NFG--EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV-----CPSILV 113
           + G  EDG+VQ ++E   +PYT S +L SALSMDK+R+KQV  S G+         +   
Sbjct: 79  HNGGGEDGIVQGLMEAFGVPYTGSDVLGSALSMDKIRTKQVWLSLGLSTPRYARLAAGAS 138

Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
                 +   +  P ++KP   GSS+G+  +  DQ+   D +  ++   G  LL+EQ ++
Sbjct: 139 AADIHAAAQQLGLPVIVKPANEGSSVGVSRVF-DQAQLEDAVTLAARYDG-ALLMEQLIE 196

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           G ELT  V+GD +L    I VPK  +Y Y  KY + ++ ++ P  +  +   ++++LA  
Sbjct: 197 GDELTVAVLGDTALPSIRI-VPKGQWYDYNAKYIAEDTQYLCPG-LEGEPEAQIRQLALD 254

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           A +A GCRG  R D + D  S +++ LE+N  PGMT  S+ P+ A   G  F E L+W V
Sbjct: 255 AFRAAGCRGWGRVDVMRDGSSGQLYLLEVNTAPGMTSHSLVPKAARQLGIDFEE-LVWRV 313


>gi|300690343|ref|YP_003751338.1| D-alanine-D-alanine ligase B, affects cell division [Ralstonia
           solanacearum PSI07]
 gi|299077403|emb|CBJ50028.1| D-alanine-D-alanine ligase B, affects cell division [Ralstonia
           solanacearum PSI07]
          Length = 331

 Score =  171 bits (432), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 103/304 (33%), Positives = 162/304 (53%), Gaps = 11/304 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V++GG S+ERE+SL SG    +AL   G      D        LA          LHG
Sbjct: 20  VGVILGGRSAEREISLLSGNGVLAALRSRGVDAHPFDPGTQPVAGLATQGFHRVVISLHG 79

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG +Q +LE   IPYT SG+LASAL+MDK  +K++  + G+P  P  ++     D 
Sbjct: 80  RFGEDGTIQGLLEQFGIPYTGSGVLASALAMDKEATKRLWQTHGLPT-PDFVMLHAGADW 138

Query: 121 QHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
           Q +   +  P ++KP + GSS+G+  +     +P    +++  +    ++ EQ+++G EL
Sbjct: 139 QAVADRLGLPLIVKPAREGSSIGLTKVTSVAELPAAYEKAARLDR--DVMAEQFIEGDEL 196

Query: 178 TCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           TC V+G+     +L +  I  P+++ Y Y+ KY + ++ +  PA IP D+   VQ L   
Sbjct: 197 TCAVIGEGESATALPLIRIVAPQAN-YDYQHKYFTDDTRYECPAPIPADVAARVQALVVQ 255

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           A++ +GCRG  R+D +        F LE+N  PGMT  S+ P  A   G S+ + +L + 
Sbjct: 256 AYRGLGCRGWGRADIMLREHDNAPFLLEMNTSPGMTGHSLVPMAARAVGISYEDFVLQLA 315

Query: 294 EDAS 297
             AS
Sbjct: 316 ATAS 319


>gi|319944696|ref|ZP_08018960.1| D-alanine-D-alanine ligase B [Lautropia mirabilis ATCC 51599]
 gi|319741945|gb|EFV94368.1| D-alanine-D-alanine ligase B [Lautropia mirabilis ATCC 51599]
          Length = 334

 Score =  170 bits (431), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 107/302 (35%), Positives = 168/302 (55%), Gaps = 11/302 (3%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQID-VDRSVGLVLAHLKPDLAFNVLHGN 61
           VLMGG SSER VSL SG+    AL+  G      D  +RS+G  L     D AF  LHG 
Sbjct: 24  VLMGGHSSERNVSLDSGRNVLKALQAKGVNAEAFDPAERSLG-DLEKAGYDRAFIALHGR 82

Query: 62  FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-SILVNRFTMDS 120
           +GEDG +Q +LE+L IPYT SG++ASA+++DK+ +KQ+  +  +P  P  +L+    +  
Sbjct: 83  YGEDGTIQGVLEMLGIPYTGSGVMASAVAIDKISTKQMWQAGRLPTPPWEVLLGPHQLAG 142

Query: 121 -QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
               +  P +IKP   GS+LG+  +     +P    +++  +    +L E++V G ELT 
Sbjct: 143 LAERLGLPLIIKPPHEGSTLGLTRVDSLDRLPAAYERAADIDF--PVLAERFVQGRELTV 200

Query: 180 GVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
            V+G      +L + EI  P  + Y Y  KY + ++ ++ PA +   +  ++  LA  A+
Sbjct: 201 AVIGSGAAARALPIVEIRAPNGN-YDYRNKYFTDDTRYLCPAPLVPAMAADIASLAEAAY 259

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           +A+GC G  R D + D  +++ + LE+N  PGMT  S+ P  A  AG S+ +L+L +   
Sbjct: 260 RAVGCEGWGRVDIMLDDGTQRPWLLEVNTSPGMTGHSLVPMAARAAGISYEDLVLGLTAQ 319

Query: 296 AS 297
           AS
Sbjct: 320 AS 321


>gi|229588492|ref|YP_002870611.1| D-alanine--D-alanine ligase [Pseudomonas fluorescens SBW25]
 gi|229360358|emb|CAY47215.1| D-alanine--D-alanine ligase B [Pseudomonas fluorescens SBW25]
          Length = 318

 Score =  170 bits (431), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 111/293 (37%), Positives = 164/293 (55%), Gaps = 8/293 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL SG A   AL+ AG     IDV       L   K D AF +LHG
Sbjct: 20  VAVLFGGKSAEREVSLKSGNAVLEALQSAGVNAFGIDVGDDFLARLQAEKIDRAFIILHG 79

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-SILVNR-FTM 118
             GEDG +Q +LE   IPYT SGILASAL+MDK+R+KQV  S G+P    S+L +    +
Sbjct: 80  RGGEDGSMQGLLECAGIPYTGSGILASALAMDKLRTKQVWHSLGIPTPRHSVLCSEDDCI 139

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   +  P ++KP   GSS+G+  +     + +D  +++S  +  Q+L+EQ++ G E T
Sbjct: 140 SAAKELGLPLIVKPAHEGSSIGMAKVNSAAEL-IDAWKAAS-TYDSQVLVEQWIQGPEYT 197

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +    L    +  P + FY Y+ KY + ++ + +P  +     +E+  L   A +A+
Sbjct: 198 IATLRGQVLPPIALGTPHT-FYDYDAKYVASDTQYRIPCGLDATKEQELMDLTAKACEAL 256

Query: 239 GCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           G  G +R+D + D   +  FW LE+N  PGMT  S+ P  A  AG  F++L+L
Sbjct: 257 GIAGWARADVMQD--DQGNFWFLEVNTAPGMTDHSLVPMAARAAGLDFQQLVL 307


>gi|328956371|ref|YP_004373704.1| D-alanine--D-alanine ligase [Coriobacterium glomerans PW2]
 gi|328456695|gb|AEB07889.1| D-alanine--D-alanine ligase [Coriobacterium glomerans PW2]
          Length = 318

 Score =  170 bits (431), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 112/303 (36%), Positives = 165/303 (54%), Gaps = 14/303 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGF-KVSQID-VDRSVGLVLAHLKPDLAFNVL 58
           +AVL GG S ERE+S +SG++   AL+ AG+ +V  +D  D      +     D  F  L
Sbjct: 11  IAVLAGGTSPEREISFASGESVCRALKQAGYGRVETLDPADSGFLKEIESASFDAVFIAL 70

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF-T 117
           HG  GEDG +Q +L+ L IPYT SG+ ASA + DK  SK +    G+PV   + + R   
Sbjct: 71  HGAGGEDGTIQGVLDYLHIPYTGSGVRASACAADKDVSKIIFEHAGIPVARGVTLCRGDE 130

Query: 118 MDSQHLIS---PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
           ++   L++       +KP   GSSLG+ +I+    +P  +    ++   D++LIEQ + G
Sbjct: 131 LNPDSLVAELGKECFVKPAMNGSSLGVSLIRHPSELPKAV--ERAFESSDKVLIEQRLIG 188

Query: 175 IELTCGVMG--DA-SLDVTEI-AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            E++ GV+G  DA +L V EI     +DFY+ E+KY      H +PA++P  I +    L
Sbjct: 189 TEISVGVLGGRDAKALPVVEIMGQEGTDFYNKEVKYIDPALVHRIPARLPTGICETAGAL 248

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A  AH+A+GC G SRSDF+          LE N  PGMT  S+FP+   + G +F E   
Sbjct: 249 ALGAHRALGCYGFSRSDFIV--TEEGPVILETNTIPGMTEASLFPDEIRHCGRTFAEACD 306

Query: 291 WMV 293
            M+
Sbjct: 307 EMI 309


>gi|238786724|ref|ZP_04630525.1| D-alanine--D-alanine ligase [Yersinia frederiksenii ATCC 33641]
 gi|238725092|gb|EEQ16731.1| D-alanine--D-alanine ligase [Yersinia frederiksenii ATCC 33641]
          Length = 289

 Score =  170 bits (431), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 103/285 (36%), Positives = 156/285 (54%), Gaps = 13/285 (4%)

Query: 14  VSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILE 73
           +SL SG+A  + L +AG     +D   S    L     D  F  LHG  GEDG +Q +LE
Sbjct: 1   MSLLSGQAVLAGLREAGIDAHGVDTKDSPVTQLKEQGFDKVFIALHGRGGEDGTLQGVLE 60

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---FTMDSQHL------I 124
            L++PYT SG++ASAL+MDK+R+K V  +  +P+ P + +NR    T+ S+ L      +
Sbjct: 61  FLQLPYTGSGVMASALTMDKLRTKLVWQASDLPISPYVALNRQQFETLSSEELSACVAKL 120

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
             P ++KP   GSS+G+   K DQ+  L      ++ H   +LIE+++ G E T  ++GD
Sbjct: 121 GLPLIVKPSHEGSSVGM--SKVDQASELQAALVEAFRHDTDVLIEKWLSGPEFTVAILGD 178

Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244
             L    I  P   FY YE KY S  + +  P+ +  ++ +++  LA  A+QA+GC G  
Sbjct: 179 EVLPSIRIQAPGV-FYDYEAKYLSDETQYFCPSGLSAELEQQLAELALQAYQALGCSGWG 237

Query: 245 RSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           R D + D   R  + LE+N  PGMT  S+ P  A  +G SF +L+
Sbjct: 238 RVDVMQDSDGR-FYLLEVNTSPGMTSHSLVPMAARESGLSFSQLV 281


>gi|292490627|ref|YP_003526066.1| D-alanine--D-alanine ligase [Nitrosococcus halophilus Nc4]
 gi|291579222|gb|ADE13679.1| D-alanine/D-alanine ligase [Nitrosococcus halophilus Nc4]
          Length = 316

 Score =  170 bits (431), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 107/297 (36%), Positives = 166/297 (55%), Gaps = 8/297 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG S+ERE+SL SG A   AL   G     IDV   V   L+  + + AF  LHG
Sbjct: 13  VAVLMGGRSAEREISLKSGTAVLEALLRQGVDAQGIDVGERVLEQLSRGQFERAFIALHG 72

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG++Q  LE L +PYT SG+L SAL+MDK+RSKQ+    G+P     ++N  T D 
Sbjct: 73  RGGEDGVIQGALETLGLPYTGSGVLGSALAMDKLRSKQLWRGMGLPTADFSVLNEGT-DL 131

Query: 121 QHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
             +++    P ++KP + GSSLG+  +   +++     ++ +++    ++ EQ++ G E 
Sbjct: 132 ALVVANLGLPLMVKPAREGSSLGMRKVDSIEALRAAYREAMAFD--GTVIAEQWLPGAEY 189

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           T  ++   +L +  +  P+  FY +E KY +  + ++ P  +  +  + +Q LA  A QA
Sbjct: 190 TAAILTGRALPLIGLETPRI-FYDFEAKYLTDTTRYLCPCGLSEEQAQHLQALALQAFQA 248

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           +G  G  R DF  D  +R    LE+N  PGMT  S+ P  A  AG  F +L+L ++E
Sbjct: 249 LGASGWGRVDFRCDAQARPCL-LEVNTVPGMTAHSLVPMAAQAAGIEFDQLVLQILE 304


>gi|21672494|ref|NP_660561.1| D-alanine--D-alanine ligase [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
 gi|22654229|sp|O51927|DDL_BUCAP RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|21623113|gb|AAM67772.1| D-alanine--D-alanine ligase [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
          Length = 306

 Score =  170 bits (430), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 107/307 (34%), Positives = 170/307 (55%), Gaps = 21/307 (6%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG SSER++S+ SG A   +L  +GF    ID      + L     D A+  LHG
Sbjct: 5   IAVLLGGNSSERKISIKSGYAILQSLLRSGFNAYAIDTRDFPIMQLKKQGFDSAYIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR----- 115
             GEDG +Q ILE L IPYT SGI++SA+S+DK R+K +  S  + V P I + +     
Sbjct: 65  TGGEDGSIQGILEYLNIPYTGSGIMSSAISLDKWRTKLLWKSLSLRVLPDIYLQKKDISK 124

Query: 116 ----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS---SWNHGDQLLI 168
               + +     +  P VIKP   GSS+GI ++        DLL  S   ++N+ + ++I
Sbjct: 125 YTYSYILKKILKLKFPVVIKPNNAGSSIGITIVNHP-----DLLIDSINLAFNYSNNIII 179

Query: 169 EQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           E+++ G E T  ++    L   +I + K++FY Y  KY   ++ ++ P+ +     +E++
Sbjct: 180 EKFLKGTEYTVSILNKKVLPPIKI-ITKNNFYDYSSKYIESSTEYICPSGLNYQKEEELK 238

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRE 287
           ++  +A  ++GC+G  R D + D  ++  FW LEIN  PGMT  S+ P  A   G SF E
Sbjct: 239 KIVEIAWNSLGCKGCGRIDAILD--NKDKFWLLEINTIPGMTHRSLVPMAAKSIGISFDE 296

Query: 288 LLLWMVE 294
           L+L +++
Sbjct: 297 LILKILK 303


>gi|309379070|emb|CBX22372.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 304

 Score =  170 bits (430), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 113/304 (37%), Positives = 165/304 (54%), Gaps = 17/304 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSERE+SL SG A  +AL+  G      D   +    L       AFN LHG
Sbjct: 7   VAVLMGGFSSEREISLDSGTAILNALKSKGIDAHAFDPKETPLSELKERGFQTAFNTLHG 66

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-SILVNRFTMD 119
            +GEDG VQ  LELL IPYT SG+ ASA+ MDK R K +  + G+PV   ++L +    D
Sbjct: 67  VYGEDGAVQGALELLGIPYTGSGVAASAIGMDKYRCKLIWQALGLPVPEFAVLHDDSDFD 126

Query: 120 S-QHLISPPYVIKPLKGGSSLGIIVIKKDQSIP-----LDLLQSSSWNHGDQLLIEQYVD 173
           + +  +  P  +KP   GSS+G++ +K+   +      L  LQ        +++ E+++ 
Sbjct: 127 AVEEKLGLPMFVKPAAEGSSVGVVKVKEKGRLKSVYEELKHLQG-------EIIAERFIG 179

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR-LAF 232
           G E +C V+    L    I +P ++FY YE KY+  ++ +  PA+   +  + + R LA 
Sbjct: 180 GGEYSCPVLNGKGLPSIHI-IPATEFYDYEAKYNRDDTVYQCPAEDLGEAEETMMRSLAV 238

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
              QAIG  G  R DFL D    K++ LEIN  PGMT  S+ P+ AA  G  F +L + +
Sbjct: 239 RGAQAIGAAGCVRVDFLKD-TDGKLYLLEINTLPGMTSHSLVPKSAARTGVGFADLCIEI 297

Query: 293 VEDA 296
           ++ A
Sbjct: 298 LKTA 301


>gi|114777859|ref|ZP_01452790.1| D-alanine--D-alanine ligase [Mariprofundus ferrooxydans PV-1]
 gi|114551850|gb|EAU54390.1| D-alanine--D-alanine ligase [Mariprofundus ferrooxydans PV-1]
          Length = 307

 Score =  170 bits (430), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 111/296 (37%), Positives = 156/296 (52%), Gaps = 14/296 (4%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62
           VLMGG S+EREVSL SG A   AL  AG     ID+ ++    +A    D AF  LHG  
Sbjct: 16  VLMGGTSAEREVSLRSGAAVLDALRAAGVDAVGIDLQQNWADQIAKAAIDTAFIALHGTL 75

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
           GEDG VQ +LE++ IPYT S ++ASAL M+K   KQV+   G+   P  +    T   ++
Sbjct: 76  GEDGCVQGLLEIMGIPYTGSHVMASALCMNKRLCKQVLGQAGLST-PMDIRIEVTGPERY 134

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSI-PLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
               P  +KP+  GSS+G+  I   Q    L++   ++W      + E  V+G+E+   V
Sbjct: 135 ----PVFVKPVAEGSSVGLHRISSQQEWQALNIQSPAAW------MAEMPVNGVEIAVSV 184

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241
           +   +L   E+A PKS  Y Y  KY+   + +  PA++P++  +     A  A  A GC 
Sbjct: 185 LAGVALMPVEVA-PKSGVYDYASKYTVGATEYFCPARLPMETVRYCMDCAEKAVAACGCT 243

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           G  R D +       V  LEIN  PGMT  S+ P+ AA AG  F+ L L ++E AS
Sbjct: 244 GAPRVDMIVGSGGEAVI-LEINTLPGMTATSLLPKAAAVAGIDFQTLCLRILETAS 298


>gi|120609517|ref|YP_969195.1| D-alanine--D-alanine ligase [Acidovorax citrulli AAC00-1]
 gi|190359104|sp|A1TKD3|DDL_ACIAC RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|120587981|gb|ABM31421.1| D-alanine--D-alanine ligase [Acidovorax citrulli AAC00-1]
          Length = 334

 Score =  170 bits (430), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 112/306 (36%), Positives = 163/306 (53%), Gaps = 15/306 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD---LAFNV 57
           +AVLMGG S+EREVSL SG     AL   G      D  +S    L+ LK       F  
Sbjct: 18  VAVLMGGDSAEREVSLMSGGGVLQALRARGVDAHAFDPSQSD---LSELKSHGYARCFIA 74

Query: 58  LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117
           LHG  GEDG VQ  LELL IPYT  G++ASA++MDK+ +K++    G+P     LV+   
Sbjct: 75  LHGRHGEDGTVQGALELLGIPYTGPGVMASAIAMDKIMTKRIWRFEGLPTPDWRLVSSAA 134

Query: 118 MDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175
             +Q L  +  P ++KP + GS++G+  +            +S ++   ++L EQ+++G 
Sbjct: 135 ETAQALEDLGSPMIVKPSREGSTIGLTKVTSPGQCEQAYRLASRYD--PEVLCEQFIEGE 192

Query: 176 ELTCGVMGDAS----LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           E TC V+G  +    L V  I  P+ + Y Y+ KY +  + +  P  +P    +E+QRL 
Sbjct: 193 ETTCPVLGQGAGAHALPVIRIVAPEGN-YDYQNKYFTDVTQYHCPCGLPEQEEREIQRLV 251

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A + + CRG +R+D +     RK F LEIN  PGMT  S+ P  A   G S+ EL L 
Sbjct: 252 VEAFRTLQCRGWARADIMIRASDRKPFLLEINTSPGMTGHSLVPMSARAMGVSYEELCLR 311

Query: 292 MVEDAS 297
           ++  AS
Sbjct: 312 ILAGAS 317


>gi|296271531|ref|YP_003654163.1| D-alanine/D-alanine ligase [Thermobispora bispora DSM 43833]
 gi|296094318|gb|ADG90270.1| D-alanine/D-alanine ligase [Thermobispora bispora DSM 43833]
          Length = 316

 Score =  170 bits (430), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 106/310 (34%), Positives = 169/310 (54%), Gaps = 20/310 (6%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK--PDLAFNVLHG 60
           VL GG+S EREVSL SG+  A  L  AG  V   D D   GLV A L   P+ AF  LHG
Sbjct: 9   VLAGGLSYEREVSLRSGRRVAEVLRAAGVDVEVRDTD--AGLVPAVLADPPEAAFVALHG 66

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG ++++LELL +PY  +   A  ++ DK  +K VV S G+    S+ + + T   
Sbjct: 67  GVGEDGAIRSVLELLNVPYVGATPDACRVAFDKPTAKAVVRSWGLATPDSVALPKETFHD 126

Query: 121 -------QHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  + ++     P  +KP +GGS+LG  +++  + +P  ++    + +GD  LIE+
Sbjct: 127 LGASAVLERIVDRLGLPLFVKPAQGGSALGASIVRTAEELPAAMV--GCFAYGDTALIEK 184

Query: 171 YVDGIELTCGV--MGDASLDVTEIA-VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227
           Y+DG+E++  V  +GD  + +T +  VP    Y Y  +Y++  +    PA++  +  +  
Sbjct: 185 YIDGVEVSVSVIDLGDGPVALTPVEIVPDGGVYDYAARYTAGRTEFFAPARLTDEEIEAC 244

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287
           + +A  AH A+G R +SR+D + D  S + ++LE+NV PGMT  S+FP     AG     
Sbjct: 245 KAMAVTAHTALGLRDLSRTDIIVD-RSGQPYFLEVNVSPGMTETSLFPMAVETAGRDLGT 303

Query: 288 LLLWMVEDAS 297
           +   ++E A+
Sbjct: 304 VFRVLLERAA 313


>gi|261401752|ref|ZP_05987877.1| D-alanine--D-alanine ligase B [Neisseria lactamica ATCC 23970]
 gi|313667819|ref|YP_004048103.1| D-alanine--D-alanine ligase B [Neisseria lactamica ST-640]
 gi|269208126|gb|EEZ74581.1| D-alanine--D-alanine ligase B [Neisseria lactamica ATCC 23970]
 gi|313005281|emb|CBN86714.1| D-alanine--D-alanine ligase B [Neisseria lactamica 020-06]
          Length = 304

 Score =  170 bits (430), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 113/304 (37%), Positives = 165/304 (54%), Gaps = 17/304 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSERE+SL SG A  +AL+  G      D   +    L       AFN LHG
Sbjct: 7   VAVLMGGFSSEREISLDSGTAILNALKSKGIDAHAFDPKETPLSELKERGFQTAFNTLHG 66

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-SILVNRFTMD 119
            +GEDG VQ  LELL IPYT SG+ ASA+ MDK R K +  + G+PV   ++L +    D
Sbjct: 67  VYGEDGAVQGALELLGIPYTGSGVAASAIGMDKYRCKLIWQALGLPVPEFAVLHDDSDFD 126

Query: 120 S-QHLISPPYVIKPLKGGSSLGIIVIKKDQSIP-----LDLLQSSSWNHGDQLLIEQYVD 173
           + +  +  P  +KP   GSS+G++ +K+   +      L  LQ        +++ E+++ 
Sbjct: 127 AVEEKLGLPMFVKPAAEGSSVGVVKVKEKGRLKSVYEELKHLQG-------EIIAERFIG 179

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR-LAF 232
           G E +C V+    L    I +P ++FY YE KY+  ++ +  PA+   +  + + R LA 
Sbjct: 180 GGEYSCPVLNGKGLPSIHI-IPATEFYDYEAKYNRDDTVYQCPAEDLGEAEETLMRSLAV 238

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
              QAIG  G  R DFL D    K++ LEIN  PGMT  S+ P+ AA  G  F +L + +
Sbjct: 239 RGAQAIGAAGCVRVDFLKD-TDGKLYLLEINTLPGMTSHSLVPKSAARTGVGFADLCIEI 297

Query: 293 VEDA 296
           ++ A
Sbjct: 298 LKTA 301


>gi|317153980|ref|YP_004122028.1| D-alanine--D-alanine ligase [Desulfovibrio aespoeensis Aspo-2]
 gi|316944231|gb|ADU63282.1| D-alanine/D-alanine ligase [Desulfovibrio aespoeensis Aspo-2]
          Length = 304

 Score =  170 bits (430), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 110/291 (37%), Positives = 153/291 (52%), Gaps = 8/291 (2%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVG-LVLAHLKPDLAFNVLHGN 61
           ++ GG S EREVSLS  K   +ALE+ G +V+  D  +    LV    + D AF  LHG 
Sbjct: 5   LIAGGWSDEREVSLSGAKKIRTALEELGHRVTFFDPAQDFRHLVRTAREADFAFINLHGT 64

Query: 62  FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ 121
            GEDGL+QA+L+    PY  +G  AS L++DK  SK+V  + G+   P   +        
Sbjct: 65  PGEDGLIQAMLDKAGCPYQGAGAAASYLALDKGASKEVFETLGIDTPPWQFITPTQGADT 124

Query: 122 HLISP-PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            L  P P  +KP KGGSSLG+ +++     P  L  S  +      L+E ++ G+ELTC 
Sbjct: 125 PLALPLPVFVKPNKGGSSLGMSLVRTAGEFPSAL--SKVFAMCQSALVEIFIPGVELTCA 182

Query: 181 VMGDASLDVTEIAVPKSD--FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           V+GD  L +  I  PK+   F+ YE KY++  +  V PA +   + + VQ     AH A+
Sbjct: 183 VLGDRPLPLIMI-TPKAGAPFFDYENKYAADGAEEVCPAPVSDAVTRLVQERMLAAHNAL 241

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           G  G SR DF+        + LEIN  PGMTP S+ P  A   G SF  L+
Sbjct: 242 GLTGYSRGDFILA-ADGTPYLLEINTLPGMTPTSLLPRAAGQVGLSFAALI 291


>gi|119469216|ref|ZP_01612200.1| D-alanine-D-alanine ligase B, affects cell division
           [Alteromonadales bacterium TW-7]
 gi|119447468|gb|EAW28736.1| D-alanine-D-alanine ligase B, affects cell division
           [Alteromonadales bacterium TW-7]
          Length = 306

 Score =  170 bits (430), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 103/297 (34%), Positives = 155/297 (52%), Gaps = 7/297 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AV++GG S+EREVSL SG+A  +AL++ G      D        L  L  D  F  LHG
Sbjct: 11  VAVMLGGNSAEREVSLKSGQAVFNALQNCGVDAIAFDPQNRSLWELKELNVDRVFIALHG 70

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG VQ  LE + +PYT S +L SAL+MDK+R K +  S G+   P  +V+      
Sbjct: 71  RGGEDGTVQGALEFMNLPYTGSNVLGSALAMDKIRCKHLFKSAGLSTAPYAVVDAKKGFD 130

Query: 121 QHLISPPY---VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            H I   +   ++KP   GSS+G+      Q +   L+ +  ++   Q+L+EQ++ G E 
Sbjct: 131 AHAIMAEFKKVMVKPSHEGSSIGMAQATTAQELEDALINAFKFD--SQVLVEQWITGREF 188

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           T  V+GD    V E+  P   FY Y+ KY S  + +  PA +     +++Q ++  A   
Sbjct: 189 TVTVLGDEVQPVIEMTTPNG-FYDYQAKYQSNTTQYHCPANLSTHDTQQLQAMSLEAFDL 247

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           +G  G  R D + D      + LE+N  PGMT  S+ P  A   G SF +L++ ++E
Sbjct: 248 VGASGWGRVDAMQDEQGN-FYLLEVNTVPGMTEKSLVPMAAKANGASFEQLVVRILE 303


>gi|323190226|gb|EFZ75502.1| D-alanine--D-alanine ligase B [Escherichia coli RN587/1]
          Length = 306

 Score =  170 bits (430), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 105/303 (34%), Positives = 165/303 (54%), Gaps = 13/303 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SG A  + L + G     +D        L  +     F  LHG
Sbjct: 5   IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117
             GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK +    G+PV P + + R     
Sbjct: 65  RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124

Query: 118 -MDSQHL-----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
            ++ + L     +  P ++KP + GSS+G+  +  + ++  D L+  ++ H +++LIE++
Sbjct: 125 GLNDKQLAEISSLGLPVIVKPSREGSSVGMSKVVAENALQ-DALR-LAFQHDEEVLIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L    I    + FY YE KY S  + +  P  +       +Q L 
Sbjct: 183 LSGPEFTVAILGEEILPSIRIQSAGT-FYDYEAKYLSDETQYFCPVGLEASQEANLQALV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A   +GC+G  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 242 LKAWTTLGCKGWGRIDVMLDS-DGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300

Query: 292 MVE 294
           ++E
Sbjct: 301 ILE 303


>gi|332528461|ref|ZP_08404453.1| d-alanine--d-alanine ligase [Hylemonella gracilis ATCC 19624]
 gi|332042140|gb|EGI78474.1| d-alanine--d-alanine ligase [Hylemonella gracilis ATCC 19624]
          Length = 333

 Score =  170 bits (430), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 112/309 (36%), Positives = 166/309 (53%), Gaps = 21/309 (6%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-VDRSVGLVLAHLKPD---LAFN 56
           +AVLMGG S+EREVSL SG     AL+  G      D   R +G     LK D     F 
Sbjct: 11  VAVLMGGASAEREVSLMSGTGVLKALQSRGVDAHAFDPAQRELG----ELKRDGYARCFI 66

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116
            LHG FGEDG VQ  LELL IPYT SG+LAS+++MDK+ +K++  + G+P       N  
Sbjct: 67  ALHGRFGEDGTVQGALELLGIPYTGSGVLASSVAMDKVMTKRIWLAEGLPT--PRWKNVT 124

Query: 117 TMDSQHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
           ++D        +  P ++KP + GS++G+  +  D +      Q ++  H   +L EQ++
Sbjct: 125 SVDETRAALAELGAPMIVKPAREGSTIGLTKVN-DATQCAQAYQLAA-QHDPLVLCEQFI 182

Query: 173 DGIELTCGVMGDAS----LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
            G E+T  V+G  +    L    I  P  + Y YE KY S  + +++P+ +P      +Q
Sbjct: 183 AGDEVTVPVIGSGADARALPAIRIVAPGGN-YDYEHKYFSDGTQYIIPSGLPEGEEARIQ 241

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
            L   +  A+GCRG +R+D + D  +R  + LEIN  PGMT  S+ P  A  AG S+ +L
Sbjct: 242 DLVLRSFHALGCRGWARADVMIDAKTRTPYLLEINTSPGMTGHSLVPMSAKAAGISYEDL 301

Query: 289 LLWMVEDAS 297
            L ++  A+
Sbjct: 302 CLRLLATAT 310


>gi|53803430|ref|YP_114840.1| D-alanine--D-alanine ligase [Methylococcus capsulatus str. Bath]
 gi|81681291|sp|Q604W0|DDL_METCA RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|53757191|gb|AAU91482.1| D-alanine--D-alanine ligase [Methylococcus capsulatus str. Bath]
          Length = 309

 Score =  170 bits (430), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 103/296 (34%), Positives = 160/296 (54%), Gaps = 6/296 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG ++ERE+SL SGKA   AL   G     IDV R +   L   + D  FNV+HG
Sbjct: 14  VAVLMGGSAAEREISLKSGKAVLEALRSGGIDAEGIDVGRDLIAPLLERRFDRVFNVIHG 73

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--M 118
             GEDG++Q  L  L +P T SG+LASALSMDK+R+K   +  G+P  P + ++      
Sbjct: 74  RGGEDGVLQGALACLRVPCTGSGVLASALSMDKLRTKLCWTGAGLPTPPWLRLDSPDDLE 133

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
             +  +  P ++KP + GSS+G+      + +     ++S   +G  +  E+++DG+E T
Sbjct: 134 RCRQALGFPVIVKPAEEGSSIGMSRAATAEELAQAWERAS--GYGCAVFAERWIDGVEYT 191

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
            G++    L +  +  P + FY ++ KY +  + +  P  +      E+Q L   A Q +
Sbjct: 192 GGMLKGVPLPLIRLETPHA-FYDFDAKYRADTTRYHCPCGLDTGREAELQALVLRACQIV 250

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           G  G  R D L D  S + + +E+N  PGMT  S+ P  A  AG  F+EL+  ++E
Sbjct: 251 GVSGWGRVDLLVD-RSGQPWLIEVNTVPGMTDHSLVPMAAKAAGIDFQELVWHILE 305


>gi|92114310|ref|YP_574238.1| D-alanine--D-alanine ligase [Chromohalobacter salexigens DSM 3043]
 gi|122419690|sp|Q1QVG9|DDL_CHRSD RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|91797400|gb|ABE59539.1| D-alanine--D-alanine ligase [Chromohalobacter salexigens DSM 3043]
          Length = 314

 Score =  169 bits (429), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 109/293 (37%), Positives = 163/293 (55%), Gaps = 10/293 (3%)

Query: 6   GGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGED 65
           GG S+EREVSL SG A  ++L  +G      D        L  L PD  F  +HG  GED
Sbjct: 23  GGRSAEREVSLLSGGAVLASLVRSGVDAHGFDFAGGGLSGLEALAPDRVFIAMHGRDGED 82

Query: 66  GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS 125
           G +Q  LELL IPYT SG+LASAL MDK R+KQ+  + G+P   S+++     D   +I 
Sbjct: 83  GSLQGALELLGIPYTGSGVLASALGMDKERTKQLWRAHGLPTPESVMLEG-EPDWDAVIE 141

Query: 126 P---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
               P ++KP+  GS++GI +++   ++     ++S ++    ++ E++V G E T  ++
Sbjct: 142 ALGLPLIVKPVHEGSTIGISIVETRDALIAAHAEASRFD--SAIMAERFVQGEEYTVSLL 199

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
           GD  L    + VP S FY YE KY S  + ++LP  +  +  + +  +   A +AIG RG
Sbjct: 200 GDEVLPAIRVEVP-SGFYDYEAKYHSDTTRYLLPCGLEQEEERMLGDVCRRAFEAIGGRG 258

Query: 243 ISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             R D + D   R  FW LE+N  PGMT  S+ P+ AA+AG  F  L+L +++
Sbjct: 259 WGRVDVMRDAQGR--FWLLEVNTVPGMTDHSLVPQAAAHAGLDFDALVLRILD 309


>gi|83648520|ref|YP_436955.1| D-alanine-D-alanine ligase-like protein [Hahella chejuensis KCTC
           2396]
 gi|83636563|gb|ABC32530.1| D-alanine-D-alanine ligase and related ATP-grasp enzyme [Hahella
           chejuensis KCTC 2396]
          Length = 315

 Score =  169 bits (429), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 108/296 (36%), Positives = 167/296 (56%), Gaps = 13/296 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV-LAHLKPDLAFNVLH 59
           +AVL GG S+ER+VSL SG    +AL + G  V    VD   GL  L     D  F VLH
Sbjct: 20  VAVLFGGASAERDVSLKSGGQVLAALRNVG--VDCFHVDPRDGLQPLLDGDFDRVFIVLH 77

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G  GEDG +Q +L LL  PYT S +LASAL+MDK+R+KQ+  + G+P  P   V     D
Sbjct: 78  GRGGEDGTMQGLLTLLNKPYTGSDVLASALAMDKLRTKQLWETMGIPT-PKYAVLDAGSD 136

Query: 120 SQHLISP-----PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
            + +++      P ++KP+  GSS+G+  +   + +    L+++ ++    ++ EQ++ G
Sbjct: 137 WEAIVTEVGAGQPLMVKPVHEGSSIGMRRVVTAEELEAAYLEAAKFDS--VVIAEQWITG 194

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
            E T  ++G+ +L   ++   +  FY YE KY   ++ ++LP  +P D   E++ LA  A
Sbjct: 195 AEYTVSILGEDALPAIKLETDRQ-FYDYEAKYVVNDTRYILPCGLPQDKEDELKTLALRA 253

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           ++AIGC G  R D + D   +  + LE+N  PGMT  S+ P  A  +G SF +L+L
Sbjct: 254 YRAIGCSGWGRVDIMCDAAGQP-WLLEVNTVPGMTDHSLVPMAAKASGLSFEQLVL 308


>gi|322513885|ref|ZP_08066964.1| D-alanine-D-alanine ligase B [Actinobacillus ureae ATCC 25976]
 gi|322120284|gb|EFX92231.1| D-alanine-D-alanine ligase B [Actinobacillus ureae ATCC 25976]
          Length = 303

 Score =  169 bits (429), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 105/298 (35%), Positives = 168/298 (56%), Gaps = 9/298 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG+S EREVSL+SG A   AL+  G+ V  ID        L        FN+LHG
Sbjct: 8   IAVLFGGVSQEREVSLNSGAAVTKALKSLGYNVEGIDTKDFPIEKLKEKGIQRVFNILHG 67

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF-TMD 119
             GE+G++Q  LE + IPYT  G++ASA+++DK R+K +  + G+P    ++V R   +D
Sbjct: 68  GIGENGVLQGALEQMGIPYTGCGVMASAVTLDKFRTKLMWQAVGLPTAEMVVVRRGEAVD 127

Query: 120 SQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
           S+ +I+    P  +KP   GSS+G+   K  + +   + ++  ++    +L+E ++ G E
Sbjct: 128 SEQIIAKLGLPVFVKPSSEGSSVGVTKAKTVEQLLPAIEEALKFD--SIVLVEAFLTGKE 185

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
            +  V+    L   ++ +P  +FY Y  KY S N+ +V+PA +  +   EV +L  +A+ 
Sbjct: 186 YSVPVLDGQVLPAVQV-IPDGEFYDYHAKYVSDNTQYVVPA-LTDERQAEVAKLVKVAYD 243

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            +GCRG SR D + D  +     +E+N  PGMT  SIFP+ AA  G  F +L+  ++E
Sbjct: 244 VVGCRGWSRIDVMEDA-NGHFNLVEVNTCPGMTSHSIFPKSAATVGIPFEKLVERVLE 300


>gi|254491359|ref|ZP_05104539.1| putative D-ala D-ala ligase N-terminal domain protein [Methylophaga
           thiooxidans DMS010]
 gi|224463488|gb|EEF79757.1| putative D-ala D-ala ligase N-terminal domain protein [Methylophaga
           thiooxydans DMS010]
          Length = 312

 Score =  169 bits (429), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 106/300 (35%), Positives = 169/300 (56%), Gaps = 9/300 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG S+ERE+SL SGKA  + L+  G     IDV   +   LA  + D AF VLHG
Sbjct: 14  VAVLMGGRSAEREISLISGKAVLAGLQRTGIDAYGIDVSFDICHQLASGQFDRAFVVLHG 73

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q  L+ + +P+T SG+ AS LSM+K  SKQ     G+P      V++ T D+
Sbjct: 74  RGGEDGEIQGFLQAINMPHTGSGVTASVLSMNKRISKQNWQQQGLPTARYEQVSQAT-DT 132

Query: 121 QHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
           + LI     P +IKP+  GSS+G+  +   +++   +  + +  + D ++ EQ++ G E 
Sbjct: 133 EQLIQQLGLPLIIKPVNEGSSIGMSKVNDAETLQAAI--ALALKYDDDVIAEQWIQGEEY 190

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           T  ++   +L    +  P+ +FY +E KY S ++ ++ P  + L+  +++Q+LA  A + 
Sbjct: 191 TVAILDGQALPGIRLKTPR-EFYDFEAKYQSNSTEYLCPCGLDLESEEQMQQLAIQAFEG 249

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           +G  G  R DF+ D  + + + LE N  PGMT  S+ P  A  AG  F + L+W + + S
Sbjct: 250 LGMTGWGRIDFMRDG-TGQFYLLEANSVPGMTDHSLVPMAAKQAGLDF-DALVWRILETS 307


>gi|71275120|ref|ZP_00651407.1| D-alanine--D-alanine ligase [Xylella fastidiosa Dixon]
 gi|170731109|ref|YP_001776542.1| D-alanine--D-alanine ligase [Xylella fastidiosa M12]
 gi|71163929|gb|EAO13644.1| D-alanine--D-alanine ligase [Xylella fastidiosa Dixon]
 gi|167965902|gb|ACA12912.1| D-alanine--D-alanine ligase [Xylella fastidiosa M12]
          Length = 320

 Score =  169 bits (429), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 110/309 (35%), Positives = 172/309 (55%), Gaps = 27/309 (8%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL SG+     L   G     +D   ++   L   + D  FNVLHG
Sbjct: 21  VAVLLGGTSAEREVSLLSGRNVLEVLRMRGVDAQSVDGVPALAQALVERRFDRVFNVLHG 80

Query: 61  NFG--EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP--------VCPS 110
           + G  EDG+VQ +++   +PYT S +LASALSMDK+R+KQV  + G+P        VC +
Sbjct: 81  HNGGGEDGVVQGLMQAFGVPYTGSDVLASALSMDKVRTKQVWLALGLPTPRYASLSVCAT 140

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS---SWNHGDQLL 167
            +  R  ++   ++  P +IKP K GSS+G+      +   L+ L+ +   +  +  +LL
Sbjct: 141 AVEVRKAVE---MLGFPVIIKPAKEGSSVGV-----SRVFALEHLEEAVALAARYEGELL 192

Query: 168 IEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD--IYK 225
           +EQ ++G ELT  ++ + +L    I VP+  +Y Y  KY + ++ +V P    LD     
Sbjct: 193 MEQLIEGDELTVSILDEMALPSIRI-VPQGQWYDYNAKYLAEDTQYVCPG---LDDVAEA 248

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285
           E+ +LA  A   +GCRG  R D + +  S + F LE+N  PGMT  S+ P+ A+  G  F
Sbjct: 249 EIAQLALAAFHGVGCRGWGRVDVMRERSSGRFFLLEVNTAPGMTTHSLVPKAASQLGMGF 308

Query: 286 RELLLWMVE 294
            +L+  ++E
Sbjct: 309 DDLVWRILE 317


>gi|262044864|ref|ZP_06017907.1| D-alanine-D-alanine ligase B [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259037833|gb|EEW39061.1| D-alanine-D-alanine ligase B [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 306

 Score =  169 bits (429), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 107/300 (35%), Positives = 162/300 (54%), Gaps = 15/300 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV-LAHLKPDLAFNVLH 59
           +AVL GG S+EREVSL+SG A  + L + G     +D  R V +  L       AF  LH
Sbjct: 5   IAVLFGGTSAEREVSLNSGAAVLAGLREGGVDAHPVD-PRDVDITQLKKQGFKKAFIALH 63

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---- 115
           G  GEDG +Q +LEL+++PYT SG++ASA+SMDK+RSK +    G+PV P + + R    
Sbjct: 64  GRGGEDGTLQGLLELIQLPYTGSGVMASAISMDKLRSKWLWQGAGLPVAPWVALTRAQFA 123

Query: 116 --FTMDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
              + D +  I+    P +IKP + GSS+G+  + +   +   L  + ++ H D++L+E+
Sbjct: 124 AGLSTDVEQQIAALGLPVIIKPSREGSSVGMSKVSERCDLASAL--ALAFQHDDEVLVEK 181

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
           ++ G E T  ++G+  L    I    + FY YE KY S  + +  P          +Q L
Sbjct: 182 WLSGPEFTVAIVGEEILPSIRIQAAGT-FYDYEAKYLSDETQYFCPGFEDPARESAIQNL 240

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
              A   +GC+G  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++
Sbjct: 241 VLKAWNVLGCKGWGRIDVMLDS-DGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVV 299


>gi|239906669|ref|YP_002953410.1| D-alanine--D-alanine ligase [Desulfovibrio magneticus RS-1]
 gi|259645166|sp|C4XRH9|DDL_DESMR RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|239796535|dbj|BAH75524.1| D-alanine--D-alanine ligase [Desulfovibrio magneticus RS-1]
          Length = 304

 Score =  169 bits (428), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 106/294 (36%), Positives = 154/294 (52%), Gaps = 6/294 (2%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSV-GLVLAHLKPDLAFNVLHGN 61
           ++ GG SSER VSLS       AL   G +V   D+     G V      D  F  LHG 
Sbjct: 5   LVAGGWSSERAVSLSGAVQIEKALTSLGHEVVPYDLSHDFPGFVRRAKACDFVFLSLHGA 64

Query: 62  FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ 121
            GEDGL QA+L+   +PY  SG   S L+++K  SKQ+     +P      V R    S 
Sbjct: 65  PGEDGLPQALLDAAGVPYQGSGPAGSFLALNKAASKQLFLEACLPTPRWTFVPRDAGTSA 124

Query: 122 HLISP-PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
               P P+ +KP  GGSS+ + ++++ + +P  L     + HGD  LIE+ + G ELTC 
Sbjct: 125 RPDFPLPWFVKPNLGGSSIHMTLVRRAEELPAAL--EKVFAHGDDALIEEGLSGPELTCA 182

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V+GD +L    I     +F+ Y  KY    +  + PA +   + +E+ RL+  AH+ +G 
Sbjct: 183 VLGDEALPPILIRPKAGEFFDYASKYEPDAADEICPAPVEPAVTEELSRLSLAAHRVLGL 242

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            G SR+DF+  P   ++  LE+N  PGMTP S+ P  AA AG SF +L+  ++E
Sbjct: 243 CGYSRADFILAPEGLRL--LEVNTLPGMTPTSLLPRAAATAGLSFADLIARLIE 294


>gi|83748768|ref|ZP_00945783.1| D-alanine--D-alanine ligase [Ralstonia solanacearum UW551]
 gi|207721501|ref|YP_002251941.1| d-alanine--d-alanine ligase (d-alanylalanine
           synthetase)(d-ala-d-ala ligase) protein [Ralstonia
           solanacearum MolK2]
 gi|207744399|ref|YP_002260791.1| d-alanine--d-alanine ligase (d-alanylalanine
           synthetase)(d-ala-d-ala ligase) protein [Ralstonia
           solanacearum IPO1609]
 gi|83724589|gb|EAP71752.1| D-alanine--D-alanine ligase [Ralstonia solanacearum UW551]
 gi|206586661|emb|CAQ17247.1| d-alanine--d-alanine ligase (d-alanylalanine
           synthetase)(d-ala-d-ala ligase) protein [Ralstonia
           solanacearum MolK2]
 gi|206595804|emb|CAQ62731.1| d-alanine--d-alanine ligase (d-alanylalanine
           synthetase)(d-ala-d-ala ligase) protein [Ralstonia
           solanacearum IPO1609]
          Length = 331

 Score =  169 bits (428), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 102/304 (33%), Positives = 163/304 (53%), Gaps = 11/304 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V++GG S+ERE+SL SG    +AL   G      D        LA          LHG
Sbjct: 20  VGVILGGRSAEREISLLSGNGVLAALRSRGVDAHPFDPGTQPVAELATQGFHRVVISLHG 79

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG +Q +LE   IPYT SG+LASAL+MDK  +K++  + G+P  P  ++     D 
Sbjct: 80  RFGEDGTIQGLLEQFGIPYTGSGVLASALAMDKEATKRLWQTHGLPT-PDFVMLHAGADW 138

Query: 121 QHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
           Q +   +  P ++KP + GSS+G+  +     +P    +++  +    ++ EQ+++G EL
Sbjct: 139 QAVADRLGLPLIVKPAREGSSIGLTKVTSVAGLPAAYERAARLDR--DVMAEQFIEGDEL 196

Query: 178 TCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           TC V+G+     +L +  I  P+++ Y Y+ KY + ++ +  PA IP ++   VQ L   
Sbjct: 197 TCAVIGEGDSTTALPLIRIVAPQAN-YDYQHKYFTDDTRYECPAPIPAEVAARVQALVVQ 255

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           A++++GCRG  R+D +        F LE+N  PGMT  S+ P  A   G S+ + +L + 
Sbjct: 256 AYRSLGCRGWGRADIMLRKHDNAPFLLEMNTSPGMTGHSLVPMAARAVGISYEDFVLQLA 315

Query: 294 EDAS 297
             AS
Sbjct: 316 ATAS 319


>gi|254467845|ref|ZP_05081251.1| D-alanine--D-alanine ligase [beta proteobacterium KB13]
 gi|207086655|gb|EDZ63938.1| D-alanine--D-alanine ligase [beta proteobacterium KB13]
          Length = 299

 Score =  169 bits (428), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 101/297 (34%), Positives = 170/297 (57%), Gaps = 9/297 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +A+L GG S ER++S+ SG A   AL++  ++VS ID   +    L +   D AF  LHG
Sbjct: 6   IALLSGGDSEERDISIKSGLAVYQALKNLNYEVSLIDPINTDLCSLVNY--DAAFICLHG 63

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q++LELL++P+T S   AS L+M+K  SK V ++  +     +++N+  +D 
Sbjct: 64  KNGEDGKIQSLLELLKVPFTGSASTASMLAMNKYYSKLVWNNHALITPKFLILNKTNLDY 123

Query: 121 QHLI---SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
           + +I   S P+++KP   GSS GI ++K    + L    +S ++    ++ E++++G E 
Sbjct: 124 KKIITHLSDPFIVKPSSSGSSFGINLVKNKDDLILAFTDASKYD--PTVIAEEFIEGREF 181

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           T  ++G+ SL V EI   K++FY Y  KY S  +    P  +  ++ ++++ +A  A  +
Sbjct: 182 TVSILGNKSLGVLEITT-KNEFYDYNAKYVSNETIFSKPTDLNPEVLEKMENIALSAFIS 240

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           IGC G  R DF+ D      + +E+N  PGMT  S+FP  A  AG +F + +  +V+
Sbjct: 241 IGCSGWGRVDFMMDK-KFNFYLIEVNTVPGMTDHSLFPLAARNAGLNFEQTVQHIVD 296


>gi|182625622|ref|ZP_02953392.1| D-alanine--D-alanine ligase [Clostridium perfringens D str.
           JGS1721]
 gi|177909174|gb|EDT71645.1| D-alanine--D-alanine ligase [Clostridium perfringens D str.
           JGS1721]
          Length = 302

 Score =  169 bits (428), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 98/297 (32%), Positives = 164/297 (55%), Gaps = 8/297 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + ++MGGISSEREVSL SG++  + ++   ++VS+I ++    ++      D A   LHG
Sbjct: 3   VGIIMGGISSEREVSLVSGESIFNHIDKEKYEVSKIIINNKRDILEKVKGLDFALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN---RFT 117
            FGEDG VQA L++++IPY+  G L+S+L MDK  SK+V+ +  +     I VN      
Sbjct: 63  KFGEDGTVQAFLDIMDIPYSGCGALSSSLCMDKNLSKKVLKAENIRTAKWITVNSIEEID 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            D    I  P  +KP  GGSS+    + K + I   +++   ++  ++++IE +V G E+
Sbjct: 123 YDKIEEIGYPVFVKPNNGGSSVATFKVYKKEEIKDAVMEGLKYD--EEVIIESFVKGREI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC +       + EI   K+DFY Y+ KY++  + H LP ++   +Y EV+ +A    + 
Sbjct: 181 TCPIFNGELFPILEIK-SKADFYDYKQKYAANGAEH-LPVQLEKSLYDEVKEMALKTFEV 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           + C   +R D +        + LE+N  PGMT  S+FP+ A   G S+ + +  ++E
Sbjct: 239 LKCEVYARVDMIISEEGVP-YILEVNTLPGMTATSLFPQSAESRGISYSKFIDLIIE 294


>gi|254518063|ref|ZP_05130119.1| D-Ala-D-Ala ligase B [Clostridium sp. 7_2_43FAA]
 gi|226911812|gb|EEH97013.1| D-Ala-D-Ala ligase B [Clostridium sp. 7_2_43FAA]
          Length = 299

 Score =  169 bits (428), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 102/297 (34%), Positives = 161/297 (54%), Gaps = 8/297 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VLMGGISSEREVSL+SG +    +    ++V  + +D+   ++      D A   LHG
Sbjct: 3   VGVLMGGISSEREVSLNSGNSMMQHINKEKYEVIPVIIDKKEDVIEKVRDIDFALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF-TMD 119
            FGEDG VQA+LE L IPY+    L+S+L MDK  +K ++ + G+     + V     +D
Sbjct: 63  KFGEDGTVQAVLETLGIPYSGCNTLSSSLCMDKDLTKTILKANGIRTARWLNVRSIEEID 122

Query: 120 SQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
              +  I  P  IKP  GGSS+    I K + +   + +   W+  ++++IE+++ G E+
Sbjct: 123 YAAIEEIGYPVFIKPTNGGSSVATFKITKKEDVENAVREGLKWD--NEVMIEEFIKGDEI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC V  +    V  I   K+DFY YE KYS+  + H     +  DI+ EV+++A   ++A
Sbjct: 181 TCPVFENEMFPVLAIKA-KTDFYDYEQKYSANGAEH-YAINLEKDIHSEVEKMALDTYKA 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           + C   +R D +        + LE+N  PGMT  S+FP+ A   G S+ E +  ++E
Sbjct: 239 LKCSVYARIDMIITEEGVP-YVLEVNTLPGMTATSLFPQSAGEKGISYSEFIDMIIE 294


>gi|330950222|gb|EGH50482.1| D-alanine--D-alanine ligase [Pseudomonas syringae Cit 7]
          Length = 319

 Score =  169 bits (428), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 115/303 (37%), Positives = 169/303 (55%), Gaps = 8/303 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+ER VSL+SG A   AL +AG     IDV       L   K D AF VLHG
Sbjct: 21  VAVLFGGKSAERAVSLNSGNAVLGALLEAGVDAFGIDVGDDFLQRLVSEKIDRAFIVLHG 80

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV-CPSILVNRF-TM 118
             GEDG +Q +LE LEIPYT SG+LASAL+MDK+R+KQV  S G+     ++L N    +
Sbjct: 81  RGGEDGTMQGLLECLEIPYTGSGVLASALAMDKLRTKQVWQSLGLATPLHAVLENESDCI 140

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   +  P ++KP   GSS+G+  +     +      +S+++   Q+L+EQ++ G E T
Sbjct: 141 CAVTELGLPLIVKPAHEGSSIGMAKVSSVDELIAAWKAASTYD--SQVLVEQWIQGPEFT 198

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +    L    +  P S FY Y+ KY + ++ + +P  +     +E+++LA  A  AI
Sbjct: 199 VASLRGQVLPPIGLGTPHS-FYDYDAKYLASDTQYRIPCGLGDAQEQELKQLAARACDAI 257

Query: 239 GCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           G  G +R+D + D   +  FW LE+N  PGMT  S  P  A  AG  F++L+L ++ D+ 
Sbjct: 258 GIAGWARTDVMQDAQGK--FWLLEVNTVPGMTDHSQVPMAARAAGLDFQQLVLAILADSV 315

Query: 298 CLR 300
             R
Sbjct: 316 QAR 318


>gi|254253333|ref|ZP_04946651.1| D-alanine-D-alanine ligase [Burkholderia dolosa AUO158]
 gi|124895942|gb|EAY69822.1| D-alanine-D-alanine ligase [Burkholderia dolosa AUO158]
          Length = 313

 Score =  169 bits (428), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 105/301 (34%), Positives = 166/301 (55%), Gaps = 19/301 (6%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-VDRSVGLVLAHLKPD---LAFN 56
           +AVL GG S+EREVSL+SG+     L DAG      D  +R     L+ LK +    AFN
Sbjct: 12  VAVLFGGESAEREVSLTSGRLVLQGLRDAGVDAHPFDPAERP----LSALKDEGFVRAFN 67

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR- 115
            LHG +GE+G +Q  L+   I YT SG+L SAL +DK R+K V    GVP  P   V R 
Sbjct: 68  ALHGGYGENGQIQGALDFYGIRYTGSGVLGSALGLDKFRTKLVWQQTGVPTPPFETVMRG 127

Query: 116 --FTMDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
             +   +  +++    P  +KP   GSS+ ++ +K   ++P  L ++++  H   +++E+
Sbjct: 128 DDYAARATEIVAKLGLPLFVKPASEGSSVAVLKVKTADALPAALSEAAT--HDKIVIVEK 185

Query: 171 YVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
            ++ G E T  + GD  L + +I VP  +FY Y  KY + ++ +++P  +P D   E++R
Sbjct: 186 SIEGGGEYTACIAGDLDLPLIKI-VPAGEFYDYHAKYVANDTQYLIPCGLPADKEAELKR 244

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           +A  A   +GC    R+DF+ D      ++LE+N  PGMT  S+ P+ A   G  + EL+
Sbjct: 245 IARRAFDVLGCTDWGRADFMLDAQG-NAYFLEVNTAPGMTDHSLPPKAARAIGIGYSELV 303

Query: 290 L 290
           +
Sbjct: 304 V 304


>gi|301063848|ref|ZP_07204332.1| D-ala D-ala ligase N-terminal domain protein [delta proteobacterium
           NaphS2]
 gi|300442051|gb|EFK06332.1| D-ala D-ala ligase N-terminal domain protein [delta proteobacterium
           NaphS2]
          Length = 311

 Score =  169 bits (427), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 105/308 (34%), Positives = 171/308 (55%), Gaps = 15/308 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL-KPDLAFNVLH 59
           +AVL GG S ER VS+ SG A   AL +  +     D    + L+     + DL  NVLH
Sbjct: 7   IAVLSGGWSKERSVSIKSGDAVLGALNNDKYDSRIFDPKEDLNLLWQKRGEIDLVLNVLH 66

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G FGEDG +Q +LE+  +P+  S +L+SA++M+K  SK+V  + G+ V   I++ R    
Sbjct: 67  GRFGEDGRIQGLLEIYGLPFMGSSVLSSAMAMNKRVSKEVYRNMGLLVPKDIILQRGGES 126

Query: 120 S----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175
           S    + ++  P VIKP+  GSS+GI +++ D  I   +    ++   +++L+E+YV+G 
Sbjct: 127 SINKIKDVLGTPIVIKPVSEGSSIGISIMENDADIQSGI--EKAFEFAEEILVEEYVEGR 184

Query: 176 ELTCGVMGDASLDVTEI--AVPKSD--FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           E+T  V+G ++L+   +   VPK    F+ ++ KY +  S  + PA +  DI ++   + 
Sbjct: 185 EITGAVLGRSALETLPLIEIVPKESHRFFDFDAKYVAGESNEICPAALDPDISEKASEIV 244

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             AH+++ CR  SR+D +      +++ LE N  PGMT  S+ P  A   G+S   LL  
Sbjct: 245 KKAHRSLRCRDWSRTDMMIK--KDQIYVLETNTIPGMTETSLVPLAAKGRGWSLGHLLDR 302

Query: 292 MVEDASCL 299
           M+E  +CL
Sbjct: 303 MIE--TCL 308


>gi|184159849|ref|YP_001848188.1| D-alanine--D-alanine ligase [Acinetobacter baumannii ACICU]
 gi|239503826|ref|ZP_04663136.1| D-alanine--D-alanine ligase [Acinetobacter baumannii AB900]
 gi|260550190|ref|ZP_05824403.1| D-alanine-D-alanine ligase B [Acinetobacter sp. RUH2624]
 gi|260557902|ref|ZP_05830115.1| D-alanine-D-alanine ligase B [Acinetobacter baumannii ATCC 19606]
 gi|332872845|ref|ZP_08440810.1| D-ala D-ala ligase protein [Acinetobacter baumannii 6014059]
 gi|229485849|sp|B2I1J3|DDL_ACIBC RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|229485853|sp|A3M9X9|DDL_ACIBT RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|183211443|gb|ACC58841.1| D-alanine-D-alanine ligase [Acinetobacter baumannii ACICU]
 gi|193078671|gb|ABO13723.2| D-alanine-D-alanine ligase B [Acinetobacter baumannii ATCC 17978]
 gi|260406718|gb|EEX00198.1| D-alanine-D-alanine ligase B [Acinetobacter sp. RUH2624]
 gi|260408693|gb|EEX01998.1| D-alanine-D-alanine ligase B [Acinetobacter baumannii ATCC 19606]
 gi|322509763|gb|ADX05217.1| ddlB [Acinetobacter baumannii 1656-2]
 gi|323519776|gb|ADX94157.1| D-alanine--D-alanine ligase [Acinetobacter baumannii TCDC-AB0715]
 gi|332739006|gb|EGJ69868.1| D-ala D-ala ligase protein [Acinetobacter baumannii 6014059]
          Length = 308

 Score =  169 bits (427), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 108/300 (36%), Positives = 165/300 (55%), Gaps = 14/300 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-VDRSVGLVLAHLKPDLAFNVLH 59
           +AVL+GG S+ER VSL SG+A   AL  +G +    D  DRSV  ++ +   D AF VLH
Sbjct: 10  VAVLLGGKSAERAVSLDSGQAVLDALLRSGVQAEAFDPQDRSVTELVNY---DRAFIVLH 66

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G  GEDG +Q +LE L IPYT +G+  SA+ MDK+++KQ+     +P  P  ++ + T D
Sbjct: 67  GRGGEDGQIQGVLEWLNIPYTGTGVQGSAIGMDKVKTKQIWQGSDLPTAPYRIITKET-D 125

Query: 120 SQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
              +I+    P +IKP+  GSS+G+  ++K +     + +++   H   ++ E+++ G E
Sbjct: 126 LDSVIAELGLPVIIKPVHEGSSVGMSKVEKAEDFAAAIEKAT--QHDAVVMAEKWITGRE 183

Query: 177 LTCGVMGDASLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
            T   +    L V  +  P    FY YE KY   +  + +P  +     K++Q L   A 
Sbjct: 184 FTISFLNGQPLPVIRLQPPADVAFYDYEAKYQRNDVEYGIPCGLSETEEKKLQALCLRAF 243

Query: 236 QAIGCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           QA+G  G  R D + D   +  FW LE+N  PGMT  S+ P+ A   GYSF EL + ++E
Sbjct: 244 QAVGAEGWGRIDAMQD--EQGNFWLLEVNTVPGMTSHSLVPKAAKAVGYSFDELCVAILE 301


>gi|171462989|ref|YP_001797102.1| D-alanine--D-alanine ligase [Polynucleobacter necessarius subsp.
           necessarius STIR1]
 gi|229485972|sp|B1XT11|DDL_POLNS RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|171192527|gb|ACB43488.1| D-alanine--D-alanine ligase [Polynucleobacter necessarius subsp.
           necessarius STIR1]
          Length = 337

 Score =  169 bits (427), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 109/301 (36%), Positives = 162/301 (53%), Gaps = 13/301 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VL+GG S ERE+SL SG     AL   G      D        L   K D  F  LHG
Sbjct: 30  VGVLLGGKSGEREISLMSGNGVLEALRSKGVDAHAFDAGLRCPTELVKEKFDRIFISLHG 89

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119
            FGEDG +Q +LELL +PYT S +LASAL++DK+ +KQV  S G+   P       T D 
Sbjct: 90  RFGEDGTIQGLLELLGLPYTGSAVLASALAIDKIVTKQVWISNGL-ATPEYEELTATSDW 148

Query: 120 ---SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
               QHL   P ++KP   GSSLG+  +K  + +P     ++  +   +++ E  + G E
Sbjct: 149 NAVVQHL-GLPLIVKPAHEGSSLGLTKVKSVEELPAAYKLAAGLDK--KVIAETCIIGDE 205

Query: 177 LTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
           LTC ++G      +L V +I  P+++ Y +  KY S  + ++ P  +  ++   VQ LA 
Sbjct: 206 LTCPLVGQGKTAEALPVIKIIPPQAN-YDFHNKYFSDETQYLCPTGLAPEVNAAVQTLAL 264

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
            A++A+GCR   R+D + D  + K + LE+N  PGMT  S+ P  A  AG  + +L+LW+
Sbjct: 265 AAYKALGCRTWGRADVMLDQKTGKPYLLEMNTSPGMTSHSLVPMAAKAAGIEYADLVLWL 324

Query: 293 V 293
           +
Sbjct: 325 L 325


>gi|326315572|ref|YP_004233244.1| D-alanine--D-alanine ligase [Acidovorax avenae subsp. avenae ATCC
           19860]
 gi|323372408|gb|ADX44677.1| D-alanine--D-alanine ligase [Acidovorax avenae subsp. avenae ATCC
           19860]
          Length = 335

 Score =  169 bits (427), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 111/306 (36%), Positives = 164/306 (53%), Gaps = 15/306 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD---LAFNV 57
           +AVLMGG S+EREVSL SG     AL   G      D  +S    L+ LK       F  
Sbjct: 19  VAVLMGGDSAEREVSLMSGGGVLQALRARGVDAHAFDPSQSD---LSELKSHGYARCFIA 75

Query: 58  LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117
           LHG  GEDG VQ  LELL IPYT  G++AS+++MDK+ +K++    G+P     LV+   
Sbjct: 76  LHGRHGEDGTVQGALELLGIPYTGPGVMASSIAMDKIMTKRIWRFEGLPTPDWRLVSSAA 135

Query: 118 MDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175
             +Q L  +  P ++KP + GS++G+  +            +S ++   ++L EQ++DG 
Sbjct: 136 ETAQALKDLGSPMIVKPSREGSTIGLTKVTSPGQCEQAYRLASRYD--PEVLCEQFIDGE 193

Query: 176 ELTCGVMGDAS----LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           E TC V+G  +    L V  I  P+ + Y Y+ KY +  + +  P+ +P    +E++RL 
Sbjct: 194 ETTCPVLGQGAGAHALPVIRIVAPEGN-YDYQNKYFTDVTQYHCPSGLPEQEEREIRRLV 252

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A + + CRG +R+D +     RK F LEIN  PGMT  S+ P  A   G S+ EL L 
Sbjct: 253 VEAFRTLQCRGWARADIMIRASDRKPFLLEINTSPGMTGHSLVPMSARAMGVSYEELCLR 312

Query: 292 MVEDAS 297
           ++  AS
Sbjct: 313 ILAGAS 318


>gi|296134866|ref|YP_003642108.1| D-alanine/D-alanine ligase [Thiomonas intermedia K12]
 gi|295794988|gb|ADG29778.1| D-alanine/D-alanine ligase [Thiomonas intermedia K12]
          Length = 342

 Score =  169 bits (427), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 103/296 (34%), Positives = 159/296 (53%), Gaps = 9/296 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG+S+EREVSL SGK   +AL+  G      D        L       AF  LHG
Sbjct: 15  VAVLMGGLSAEREVSLMSGKGVLAALQSRGVDAFAFDPSVDDLAALKSFGAQRAFINLHG 74

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV--VSSCGVPVCPSILVNRFTM 118
            +GEDG VQ  LELL IPYT  G+LASAL++DK  +K++    +   P    +       
Sbjct: 75  RWGEDGTVQGALELLGIPYTGPGVLASALAIDKAMTKRLWHFENLSTPKWREVGTLIEAR 134

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   +  P + K    GS+LG+     +  +    L+++ ++   ++L+EQ+++G E+T
Sbjct: 135 AAAAELGFPLIFKATHEGSTLGLKRADSEAEVQAAYLEAARFD--SRVLVEQFIEGDEVT 192

Query: 179 CGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
           C V+G      +L +  I  P  + Y YE KY S ++ ++ P+++P D    +Q L   +
Sbjct: 193 CAVIGAGDQARALPLIRIVAPGGN-YDYEHKYFSDDTRYICPSELPADEEARIQDLVLHS 251

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           ++ +GCRG +R+D +     R+ F LEIN  PGMT  S+ P  A  AG  + +L L
Sbjct: 252 YRTLGCRGWARADVMIRATDRQPFLLEINTSPGMTSHSLVPMAARVAGLEYADLCL 307


>gi|120603688|ref|YP_968088.1| D-alanine--D-alanine ligase [Desulfovibrio vulgaris DP4]
 gi|166198484|sp|A1VGU5|DDL_DESVV RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|120563917|gb|ABM29661.1| D-alanine--D-alanine ligase [Desulfovibrio vulgaris DP4]
          Length = 303

 Score =  169 bits (427), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 104/295 (35%), Positives = 162/295 (54%), Gaps = 7/295 (2%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSV-GLVLAHLKPDLAFNVLHGN 61
           ++ GG SSER+VSL+  +    AL   G  V+  D   S+ GL+ A    D AF  LHG+
Sbjct: 5   LIAGGWSSERDVSLAGARGIEKALRALGHDVTWFDPATSLDGLLEAASSHDFAFINLHGS 64

Query: 62  FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--SILVNRFTMD 119
            GEDGLVQA+L+    PY  SG   S L+++K  SKQ++   G+ + P  + L  R   D
Sbjct: 65  PGEDGLVQAMLDTAGCPYQGSGPAGSFLALNKAVSKQLLRRHGI-LTPDWAFLAARPAAD 123

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
            +  +  P  +KP  GGSSL +  + + + +   L   + + H  + ++E  + G+E+TC
Sbjct: 124 WEPGLGYPLFVKPNTGGSSLCLSRVTQPEGLAPAL--EAVFAHCGEAIVEPAIPGVEVTC 181

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
           GV+GD +L    I   +  F+ Y  KY+   +T + PA +P ++   VQ +   AH+ +G
Sbjct: 182 GVLGDTALPPILIRPAEGAFFDYTSKYTPGGATELCPAPLPAEVTAHVQDVTLRAHRLLG 241

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            RG SR+D++       +F LE+N  PGMTP S+ P+ AA  G  F  L+  ++E
Sbjct: 242 LRGYSRADYILRD-DGALFLLEVNTLPGMTPTSLVPQEAAAIGLDFPALIARLIE 295


>gi|115350519|ref|YP_772358.1| D-alanine--D-alanine ligase [Burkholderia ambifaria AMMD]
 gi|122324102|sp|Q0BIJ9|DDL_BURCM RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|115280507|gb|ABI86024.1| D-alanine--D-alanine ligase [Burkholderia ambifaria AMMD]
          Length = 313

 Score =  169 bits (427), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 105/301 (34%), Positives = 168/301 (55%), Gaps = 19/301 (6%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-VDRSVGLVLAHLKPD---LAFN 56
           +AVL GG S+EREVSL+SG+     L DAG      D  +R     L+ LK +    AFN
Sbjct: 12  VAVLFGGESAEREVSLTSGRLVLQGLRDAGIDAHPFDPAERP----LSALKDEGFVRAFN 67

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR- 115
            LHG +GE+G +Q  L+   I YT SG+L SAL +DK R+K V    GVP  P   V R 
Sbjct: 68  ALHGGYGENGQIQGALDFYGIRYTGSGVLGSALGLDKFRTKLVWQQTGVPTPPFETVMRG 127

Query: 116 --FTMDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
             +   +  +++    P  +KP   GSS+ ++ +K   ++P  L ++++  H   +++E+
Sbjct: 128 DDYAARATDIVAKLGLPLFVKPASEGSSVAVLKVKTADALPAALSEAAT--HDKIVIVEK 185

Query: 171 YVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
            ++ G E T  + GD  L + +I VP  +FY Y  KY + ++ +++P  +P +   E++R
Sbjct: 186 SIEGGGEYTACIAGDLDLPLIKI-VPAGEFYDYHAKYVANDTQYLIPCGLPAEQETELKR 244

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           +A  A   +GC    R+DF+ D  +   ++LE+N  PGMT  S+ P+ A   G S+ EL+
Sbjct: 245 IARRAFDVLGCTDWGRADFMLD-AAGNAYFLEVNTAPGMTDHSLPPKAARSIGISYSELV 303

Query: 290 L 290
           +
Sbjct: 304 V 304


>gi|290476451|ref|YP_003469356.1| D-alanine-D-alanine ligase B, affects cell division [Xenorhabdus
           bovienii SS-2004]
 gi|289175789|emb|CBJ82592.1| D-alanine-D-alanine ligase B, affects cell division [Xenorhabdus
           bovienii SS-2004]
          Length = 306

 Score =  169 bits (427), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 106/305 (34%), Positives = 165/305 (54%), Gaps = 17/305 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL SG++  + L++AG     +D        L       AF  LHG
Sbjct: 5   VAVLLGGTSAEREVSLQSGQSVVAGLKEAGINAYSVDTKDFDVTKLKGEGFSKAFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LE L+IPYT SG++ASALSMDK+R+KQ+     +PV P   +N    + 
Sbjct: 65  RGGEDGTLQGVLEFLQIPYTGSGVMASALSMDKLRTKQLWQGAKLPVSPYAAINAQKFEQ 124

Query: 121 ------QHLISP---PYVIKPLKGGSSLGIIVIKKDQSI--PLDLLQSSSWNHGDQLLIE 169
                 Q  +     P ++KP   GSS+G+  +     +   L+L    ++ H   +L+E
Sbjct: 125 VNDFQLQEYVRELGLPLMVKPNLEGSSVGMTKVNDYSELRGALEL----AFQHDTDVLVE 180

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           +++ G E T   +GD  L    I  P+  FY Y+ KY S  + +  P+ +  +   E+  
Sbjct: 181 KWLLGPEYTVAFLGDEVLPSIRIQAPEV-FYDYDAKYLSNETKYFCPSGLSAEKELELAE 239

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           +A  A++A+GC G  R D + D  +   + LE+N  PGMT  S+ P  A  +G SF +L+
Sbjct: 240 IASKAYKALGCSGWGRVDIM-DDGNGNFYLLEVNTSPGMTSHSLVPMAARQSGLSFSQLV 298

Query: 290 LWMVE 294
           + ++E
Sbjct: 299 VKILE 303


>gi|152980554|ref|YP_001354703.1| D-alanine--D-alanine ligase [Janthinobacterium sp. Marseille]
 gi|167012327|sp|A6T2F6|DDL_JANMA RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|151280631|gb|ABR89041.1| D-alanine-D-alanine ligase [Janthinobacterium sp. Marseille]
          Length = 320

 Score =  169 bits (427), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 116/307 (37%), Positives = 166/307 (54%), Gaps = 15/307 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-VDRSVGLVLAHLKPDLAFNVLH 59
           + VL GG S+EREVSL SGK   +AL   G      D  +RS+   LA  K D  F  LH
Sbjct: 8   VGVLFGGRSAEREVSLMSGKGVLAALLSKGIDAHPFDPAERSLA-ELAAEKFDRVFIALH 66

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV--CPSILVNRFT 117
           G FGEDG +Q  LE L IPYT  G++ASA++MDK+ +K+V  S GVP     ++ V   T
Sbjct: 67  GRFGEDGSLQGALEQLGIPYTGPGVMASAIAMDKVITKRVCLSHGVPTPKFTALEVEATT 126

Query: 118 MDSQHLISP----PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
            +    I+     P ++K    GS++GI  ++  + +       + ++  D +L+EQ+V 
Sbjct: 127 AEQLQAIAAEFGMPLMLKAPHEGSTIGIAKVETAEGMQAGFDLCAKYD--DVVLVEQFVK 184

Query: 174 GIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           G ELT  V+G      +L + EI  P+ + Y YE KY S ++ ++ PA       K VQ 
Sbjct: 185 GRELTVPVLGSGRNARALPIVEIIAPQGN-YDYEHKYFSDDTQYLCPAPFDAAFTKRVQA 243

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           LA  A  A+GC G +R DFL      + F LEIN  PGMT  S+ P  A  AG ++ +L 
Sbjct: 244 LAVSAFNAVGCTGWARVDFLVRESDNEPFLLEINTSPGMTGHSLVPMSAKVAGTAYEDLC 303

Query: 290 LWMVEDA 296
           + ++  A
Sbjct: 304 VEILRMA 310


>gi|301630393|ref|XP_002944306.1| PREDICTED: d-alanine--D-alanine ligase-like [Xenopus (Silurana)
           tropicalis]
          Length = 334

 Score =  169 bits (427), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 114/308 (37%), Positives = 164/308 (53%), Gaps = 19/308 (6%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP---DLAFNV 57
           +AVLMGG SSEREVSL SG     AL   G      D   +    LA LK       F  
Sbjct: 20  VAVLMGGDSSEREVSLMSGGGVLQALRARGVDAHAFDPAHAS---LADLKTHGYTRCFIA 76

Query: 58  LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NR 115
           LHG  GEDG VQ  LELL IPYT SG++AS+++MDK+ +K++    G+P     LV    
Sbjct: 77  LHGRHGEDGTVQGALELLGIPYTGSGVMASSIAMDKIMTKRIWRFEGLPTPDWRLVASAA 136

Query: 116 FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS--SWNHGDQLLIEQYVD 173
            T  +   +  P ++KP + GS++G+  +      P    Q+   +  H  ++L EQ++D
Sbjct: 137 ETAQALAALGAPMIVKPAREGSTIGLTKVTS----PGQCQQAYRLAAQHDPEVLCEQFID 192

Query: 174 GIELTCGVMGDAS----LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           G E TC V+G  +    L V  I  P+ + Y Y+ KY +  + +  P+ +P    + +QR
Sbjct: 193 GDETTCPVLGQGASATALPVIRIVAPEGN-YDYQNKYFTDVTQYHCPSGLPEAEERAIQR 251

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           L   A++ +GCRG +R+D +     R+ F LEIN  PGMT  S+ P  A  AG S+  L 
Sbjct: 252 LVERAYRTLGCRGWARADIMVRASDRQPFLLEINTSPGMTGHSLVPMSARAAGTSYEALC 311

Query: 290 LWMVEDAS 297
           L ++  AS
Sbjct: 312 LRILASAS 319


>gi|71898201|ref|ZP_00680375.1| D-alanine--D-alanine ligase [Xylella fastidiosa Ann-1]
 gi|71731940|gb|EAO33997.1| D-alanine--D-alanine ligase [Xylella fastidiosa Ann-1]
          Length = 320

 Score =  169 bits (427), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 109/309 (35%), Positives = 172/309 (55%), Gaps = 27/309 (8%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL SG+     L   G     +D   ++   L   + D  FNVLHG
Sbjct: 21  VAVLLGGTSAEREVSLLSGRNVLEVLRRRGVDAQSVDGVPALAQALVERRFDRVFNVLHG 80

Query: 61  NFG--EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP--------VCPS 110
           + G  EDG+VQ +++   +PYT S +L SALSMDK+R+KQV  + G+P        VC +
Sbjct: 81  HNGGGEDGVVQGLMQAFGVPYTGSDVLGSALSMDKVRTKQVWLALGLPTPRYASLSVCAT 140

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS---SWNHGDQLL 167
            +  R  ++   ++  P +IKP K GSS+G+      +   L+ L+ +   +  +  +LL
Sbjct: 141 AVEVRKAVE---MLGFPVIIKPAKEGSSVGV-----SRVFALEHLEEAVALAARYEGELL 192

Query: 168 IEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD--IYK 225
           +EQ ++G ELT  ++ + +L    I VP+  +Y Y  KY + ++ +V P    LD     
Sbjct: 193 MEQLIEGDELTVSILDEMALPSIRI-VPQGQWYDYNAKYLAEDTQYVCPG---LDDVAEA 248

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285
           E+ +LA  A  ++GCRG  R D + +  S + F LE+N  PGMT  S+ P+ A+  G  F
Sbjct: 249 EIAQLALAAFHSVGCRGWGRVDVMREHGSGRFFLLEVNTAPGMTTHSLVPKAASQLGMGF 308

Query: 286 RELLLWMVE 294
            +L+  ++E
Sbjct: 309 DDLVWRILE 317


>gi|291527562|emb|CBK93148.1| D-alanine--D-alanine ligase [Eubacterium rectale M104/1]
          Length = 351

 Score =  169 bits (427), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 113/345 (32%), Positives = 172/345 (49%), Gaps = 55/345 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-----DRSVGLV---------- 45
           + VL GG+S+ER+VS  +G   A AL++ G KV  +DV     DR   L           
Sbjct: 3   IVVLAGGLSTERDVSFKTGSMVAKALKENGHKVILLDVFMGYSDREEDLTGIFDRADEIS 62

Query: 46  ------------LAHLKP---------------------DLAFNVLHGNFGEDGLVQAIL 72
                       LA +K                      D+ F  LHG  GE+G +QA  
Sbjct: 63  VQVSDIPTEAPDLAKVKASRKDQSPCFFGPNVIKMCQMADIVFMALHGENGENGKIQAAF 122

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD---SQHLISPPYV 129
           +L  + YT S  L+SA++M+K  SKQ   + G+P    I + R T     ++  ++ P V
Sbjct: 123 DLFGVKYTGSDYLSSAIAMNKETSKQFFLANGIPTPKGISMTRATRQDDITKLDLTLPCV 182

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           +KP  GGSS+G+ ++K        L  +  W +  +L+IE++V G E + GV+   +L +
Sbjct: 183 VKPCCGGSSIGVTIVKDAAEFKAALDDAFKWEN--ELVIEEFVQGREFSVGVIEGKALPI 240

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
            EIA PK  FY Y+ KY + ++    PA++P  + K++Q  A    + IG    SRSDFL
Sbjct: 241 IEIA-PKEGFYDYKNKYKAGSTVETCPAELPEQVTKDMQHYAEEVARVIGLDTYSRSDFL 299

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            +    ++F LE N  PGMTP S+ P+ AA  G SF +L   +++
Sbjct: 300 LND-KNEMFCLEANTLPGMTPTSLLPQEAAVIGMSFNQLCEHLID 343


>gi|262377184|ref|ZP_06070409.1| D-alanine-D-alanine ligase B [Acinetobacter lwoffii SH145]
 gi|262307922|gb|EEY89060.1| D-alanine-D-alanine ligase B [Acinetobacter lwoffii SH145]
          Length = 309

 Score =  169 bits (427), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 107/300 (35%), Positives = 168/300 (56%), Gaps = 14/300 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-VDRSVGLVLAHLKPDLAFNVLH 59
           +AVL+GG S+EREVSL SG A   AL  +G      D  +RSV  ++ +   D AF VLH
Sbjct: 10  VAVLLGGKSAEREVSLDSGTAVLEALVRSGVNAEAFDPQERSVTELVNY---DRAFIVLH 66

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G  GEDG +Q  LE L +PYT +G+  SA+ MDK+++KQV     +P  P  +V + + D
Sbjct: 67  GRGGEDGQIQGALEWLNVPYTGTGVQGSAIGMDKVKTKQVWQGSELPTAPYRIVTKDS-D 125

Query: 120 SQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
           +  +++    P +IKP+  GSS+G+  ++K +     + +++   H   ++ E+++ G E
Sbjct: 126 ATEIVNALGLPLIIKPVHEGSSIGMSKVEKIEDFAEAIAKAT--EHDAVVMAEKWITGRE 183

Query: 177 LTCGVMGDASLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
            T  V+   +L V  +  P+   FY YE KY   +  + +P  +     ++++ L+  A 
Sbjct: 184 YTIVVLNGQALPVIRLEPPQDVAFYDYEAKYQRNDVQYGIPCGLSEAEEQQLKALSLRAF 243

Query: 236 QAIGCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           QA+G  G  R D + D      FW LE+N  PGMT  S+ P+ AA  GYSF EL + ++E
Sbjct: 244 QAVGASGWGRIDAMQDEQGN--FWLLEVNTVPGMTSHSLVPKAAAAVGYSFDELCVAILE 301


>gi|156935388|ref|YP_001439304.1| D-alanine--D-alanine ligase [Cronobacter sakazakii ATCC BAA-894]
 gi|156533642|gb|ABU78468.1| hypothetical protein ESA_03246 [Cronobacter sakazakii ATCC BAA-894]
          Length = 306

 Score =  169 bits (427), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 108/308 (35%), Positives = 169/308 (54%), Gaps = 17/308 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+ER+VSL SG A  + L++AG     +D        L     D  F  LHG
Sbjct: 5   IAVLLGGHSAERDVSLQSGSAVLAGLKEAGVDAYAVDPRDVCVTTLKEEGFDKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119
             GEDG +Q +LE L +PYT SG++ASA++MDK+R+K +    G+PV   + + R  +  
Sbjct: 65  RGGEDGTLQGMLEYLGLPYTGSGVMASAITMDKLRTKLLWQGAGLPVAQWVALERQDITG 124

Query: 120 --SQHL------ISPPYVIKPLKGGSSLGIIVIKKDQSI--PLDLLQSSSWNHGDQLLIE 169
             S+ L      +  P ++KP + GSS+G+  +   +++   L+L    ++ H  ++L+E
Sbjct: 125 GLSEALSARIAALGLPVIVKPSREGSSVGMSKVDSAEALLPALEL----AFEHDSEVLVE 180

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           +++ G E T  ++GD  L    I  P   FY YE KY S  + +  PA I     + +Q 
Sbjct: 181 KWLSGPEFTVAILGDEILPSIRIQ-PAGVFYDYEAKYLSDETQYFCPAGIDAGREQALQA 239

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           L   A + +GCRG  R D + D    + + LE+N  PGMT  S+ P  A  AG SF +L+
Sbjct: 240 LVMDAWRVLGCRGWGRVDVMQDS-DGEFYLLEVNTAPGMTSHSLVPMAARQAGMSFSQLV 298

Query: 290 LWMVEDAS 297
           + ++E A+
Sbjct: 299 VRILELAN 306


>gi|78187190|ref|YP_375233.1| D-alanyl-alanine synthetase A [Chlorobium luteolum DSM 273]
 gi|123582897|sp|Q3B391|DDL_PELLD RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|78167092|gb|ABB24190.1| D-alanine--D-alanine ligase [Chlorobium luteolum DSM 273]
          Length = 361

 Score =  168 bits (426), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 115/342 (33%), Positives = 179/342 (52%), Gaps = 57/342 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVG----------------- 43
           +A+L GG S E E+S+ S +A A+ ++   ++V  + + R  G                 
Sbjct: 6   VALLFGGRSLEHEISVISARAVAANIDRDRYRVLAVYITRDGGWYAGGVAEQILKLDIAD 65

Query: 44  ----------------LVLAHLKP---------DLAFNVLHGNFGEDGLVQAILELLEIP 78
                           +V A  +P         D+AF VLHG++GEDG VQ +LE L++P
Sbjct: 66  LIRTTSLEATAATLREMVAASAEPPFNFDFRGIDVAFPVLHGSYGEDGRVQGLLETLQVP 125

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV----NRFTMDSQHLI-----SPPYV 129
            T  G+LASAL+MDK  +K   +  G+ V  S+ V     R   ++ H +     S P  
Sbjct: 126 CTGCGVLASALTMDKALTKLAAADAGLAVAVSVTVMSHAYRRDPEATHRLAVASLSFPMF 185

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           +KP+  GSS+GI  +  +  +   +  + S +   ++LIEQ V G E+   V+G+ +L+ 
Sbjct: 186 VKPVSLGSSVGITKVNSESELAEAITHACSLD--SKVLIEQAVKGREVEVAVIGNDTLEA 243

Query: 190 T---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRS 246
           +   EI  P S+FY YE KY    +   +PA+IP D+ ++V+  A  A++A+GCRG+SR 
Sbjct: 244 SPCGEIE-PGSEFYDYEDKYIHDTAKLFIPARIPGDLQEKVREAALCAYRALGCRGMSRV 302

Query: 247 DFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           DF  D  +  + + EIN  PG TPVS++P + A AG  F EL
Sbjct: 303 DFFVDETTGSIVFNEINTIPGFTPVSMYPRLMAAAGTGFMEL 344


>gi|237747014|ref|ZP_04577494.1| D-alanine-D-alanine ligase [Oxalobacter formigenes HOxBLS]
 gi|229378365|gb|EEO28456.1| D-alanine-D-alanine ligase [Oxalobacter formigenes HOxBLS]
          Length = 321

 Score =  168 bits (426), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 101/304 (33%), Positives = 170/304 (55%), Gaps = 11/304 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VL GG S+EREVSL SGKA   AL+  G      D   +    L   + D  F  LHG
Sbjct: 13  VGVLYGGKSAEREVSLVSGKAVCEALKSRGVDAHLFDTGINDPARLQDERFDRVFIALHG 72

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG +Q +LE ++IPYT SG+LASA++MDK+ +K++  + G+P  P  +  +   DS
Sbjct: 73  RYGEDGCMQGMLEQMQIPYTGSGVLASAIAMDKIMTKRLWLAEGLPT-PRYVELKADSDS 131

Query: 121 QHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
             +++    P ++KP   GS+LG+  +K+   +      +S ++    +L E+++ G+EL
Sbjct: 132 GKVMAHLGLPLIVKPAHEGSTLGLTRVKQADQLADAYALASKYDR--SVLAEEFIKGMEL 189

Query: 178 TCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           TC ++       +L +  I  P ++ Y Y  KY +  + ++ P  +  +  +++++ A  
Sbjct: 190 TCAILELDGKPQTLPLIRIIAPDAN-YDYHNKYFNDKTRYLCPCGLDAETEEKIRQCALK 248

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           ++QA+GCRG  R D +      + F LE+N  PGMT  S+ P  A  AG S+ +L L ++
Sbjct: 249 SYQALGCRGWGRVDVILRASDNEPFLLELNSSPGMTGHSLVPMAARQAGLSYEDLCLTLL 308

Query: 294 EDAS 297
           + A+
Sbjct: 309 QSAT 312


>gi|222872735|gb|EEF09866.1| predicted protein [Populus trichocarpa]
          Length = 326

 Score =  168 bits (426), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 106/304 (34%), Positives = 166/304 (54%), Gaps = 11/304 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-VDRSVGLVLAHLKPDLAFNVLH 59
           +AVL+GG S+EREVSL SG     AL   G      D  +R +G  L     D  F  LH
Sbjct: 16  VAVLLGGRSAEREVSLMSGTGVLKALLSHGVDAHAFDPAERDLG-ELKKEGFDRCFIALH 74

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF--T 117
           G +GEDG VQ  LELL IPYT  G++AS+++MDK+ +K++    G+P     LV     T
Sbjct: 75  GRYGEDGTVQGALELLGIPYTGPGVMASSIAMDKIMTKRIWRFEGLPTPDWRLVASAGET 134

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
             +   +  P ++KP + GS++G+  +   +      + +S ++   ++L E++++G E 
Sbjct: 135 RAALQALGAPMIVKPSREGSTIGLTKVWTAEECEQAYVLASRYD--PEVLCEEFIEGDET 192

Query: 178 TCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           TC V+G      +L V  I  P+ + Y Y+ KY + ++ +  P+ +P +   E++R+   
Sbjct: 193 TCPVLGTGEGAHALPVIRIVAPEGN-YDYQNKYFTDDTKYHCPSGLPAEEEAEIRRIVVR 251

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           A + +GCRG SR+D +     RK F LEIN  PGMT  S+ P  A   G S+  L L ++
Sbjct: 252 AFRTLGCRGWSRADIMIRASDRKPFLLEINTSPGMTGHSLVPMSARAIGVSYENLCLGIL 311

Query: 294 EDAS 297
             A+
Sbjct: 312 ASAA 315


>gi|28199733|ref|NP_780047.1| D-alanine--D-alanine ligase [Xylella fastidiosa Temecula1]
 gi|32129484|sp|Q87AG1|DDL_XYLFT RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|28057854|gb|AAO29696.1| D-alanine--D-alanine ligase B [Xylella fastidiosa Temecula1]
          Length = 304

 Score =  168 bits (426), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 109/309 (35%), Positives = 172/309 (55%), Gaps = 27/309 (8%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL SG+     L   G     +D   ++   L   + D  FNVLHG
Sbjct: 5   VAVLLGGTSAEREVSLLSGRNVLEVLRMRGVDAQSVDGVPALAQALVERRFDRVFNVLHG 64

Query: 61  NFG--EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP--------VCPS 110
           + G  EDG+VQ +++   +PYT S +L SALSMDK+R+KQV  + G+P        VC +
Sbjct: 65  HNGGGEDGVVQGLMQAFGVPYTGSDVLGSALSMDKVRTKQVWLALGLPTPRYASLSVCAT 124

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS---SWNHGDQLL 167
            +  R  ++   ++  P +IKP K GSS+G+      +   L+ L+ +   +  +  +LL
Sbjct: 125 AVEVRKAVE---MLGFPVIIKPAKEGSSVGV-----SRVFALEHLEEAVALAARYEGELL 176

Query: 168 IEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD--IYK 225
           +EQ ++G ELT  ++ + +L    I VP+  +Y Y  KY + ++ +V P    LD     
Sbjct: 177 MEQLIEGDELTVSILDEMALPSIRI-VPQGQWYDYNAKYLAEDTQYVCPG---LDDVAEA 232

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285
           E+ +LA  A  ++GCRG  R D + +  S + F LE+N  PGMT  S+ P+ A+  G  F
Sbjct: 233 EIAQLALAAFHSVGCRGWGRVDVMRERGSGRFFLLEVNTAPGMTTHSLVPKAASQLGMGF 292

Query: 286 RELLLWMVE 294
            +L+  ++E
Sbjct: 293 DDLVWRILE 301


>gi|319764370|ref|YP_004128307.1| d-alanine/d-alanine ligase [Alicycliphilus denitrificans BC]
 gi|330826589|ref|YP_004389892.1| D-alanine/D-alanine ligase [Alicycliphilus denitrificans K601]
 gi|317118931|gb|ADV01420.1| D-alanine/D-alanine ligase [Alicycliphilus denitrificans BC]
 gi|329311961|gb|AEB86376.1| D-alanine/D-alanine ligase [Alicycliphilus denitrificans K601]
          Length = 322

 Score =  168 bits (426), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 108/307 (35%), Positives = 164/307 (53%), Gaps = 17/307 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG S+EREVSL SG     AL   G      D   +    L        F  LHG
Sbjct: 16  VAVLMGGDSAEREVSLMSGGGVLQALRARGVDAHAFDPAHADLSELKTHGYQRCFIALHG 75

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG VQ  LELL IPYT  G++AS+++MDK+ +K++    G+P     LV+     +
Sbjct: 76  RHGEDGTVQGALELLGIPYTGPGVMASSIAMDKIMTKRIWRFEGLPTPDWRLVSSSAETA 135

Query: 121 QHL--ISPPYVIKPLKGGSSLGIIVIKK----DQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
           Q    +  P ++KP + GS++G+  +      +Q+  L      +  H  ++L EQ++DG
Sbjct: 136 QAFQELGSPMIVKPSREGSTIGLTKVTSLGQCEQAYRL------AAQHDPEVLCEQFIDG 189

Query: 175 IELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            E TC V+G      +L V  I  P+ + Y Y+ KY +  + +  P+ +P    +E++R+
Sbjct: 190 DETTCPVLGQGDAAQALPVIRIVAPEGN-YDYQNKYFTDVTQYHCPSGLPEAEEREIRRI 248

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
              A++ +GCRG +R+D +     RK F LEIN  PGMT  S+ P  A  +G S+ +L L
Sbjct: 249 VVQAYRTLGCRGWARADIMVRKSDRKPFLLEINTSPGMTGHSLVPMSAKASGISYPDLCL 308

Query: 291 WMVEDAS 297
            ++  AS
Sbjct: 309 RILASAS 315


>gi|167614186|gb|ABZ89692.1| D-alanine--D-alanine ligase [Buchnera aphidicola]
          Length = 305

 Score =  168 bits (426), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 105/301 (34%), Positives = 171/301 (56%), Gaps = 17/301 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG SSER++S+ SG A   +L  +G     +D      + L     D A+  LHG
Sbjct: 4   IAVLLGGNSSERQISIKSGYAILESLLRSGLNAYPVDTRDFPIIQLKKQGFDSAYIALHG 63

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LE L IPYT SGI++SA+S+DK R+K +  S  +PV P + + +  + S
Sbjct: 64  KGGEDGSIQGVLEYLNIPYTGSGIMSSAISLDKWRTKLLWKSSSLPVLPDVYLKKKDI-S 122

Query: 121 QHL----------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           Q+           +  P VIKP   GSS+GI ++   Q + +D + ++++N+   ++IE+
Sbjct: 123 QYTYPSILKKILQLKFPVVIKPNNSGSSIGITIVHY-QDLLIDSI-NAAFNYSSDIIIEK 180

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
           +++G E T  ++    L   +I + K+ FY Y  KY   ++ ++ P+++     KE++ +
Sbjct: 181 FIEGREYTVSILNKKILPPVKI-ITKNHFYDYRAKYIESSTEYLCPSELHHQKEKELKNI 239

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           A  A + +GC+G  R D + D  ++  FW LE+N  PGMT  S+ P  A   G SF EL+
Sbjct: 240 AETAWRTLGCKGCGRIDVILD--NKNKFWLLEVNTIPGMTYRSLVPISAKSIGISFDELV 297

Query: 290 L 290
           L
Sbjct: 298 L 298


>gi|160896919|ref|YP_001562501.1| D-alanine--D-alanine ligase [Delftia acidovorans SPH-1]
 gi|229485953|sp|A9BUK8|DDL_DELAS RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|160362503|gb|ABX34116.1| D-alanine--D-alanine ligase [Delftia acidovorans SPH-1]
          Length = 326

 Score =  168 bits (426), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 106/304 (34%), Positives = 166/304 (54%), Gaps = 11/304 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-VDRSVGLVLAHLKPDLAFNVLH 59
           +AVL+GG S+EREVSL SG     AL   G      D  +R +G  L     D  F  LH
Sbjct: 16  VAVLLGGRSAEREVSLMSGTGVLKALLSHGVDAHAFDPAERDLG-ELKKEGFDRCFIALH 74

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF--T 117
           G +GEDG VQ  LELL IPYT  G++AS+++MDK+ +K++    G+P     LV     T
Sbjct: 75  GRYGEDGTVQGALELLGIPYTGPGVMASSIAMDKIMTKRIWRFEGLPTPDWRLVASAGET 134

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
             +   +  P ++KP + GS++G+  +   +      + +S ++   ++L E++++G E 
Sbjct: 135 RAALQALGAPMIVKPSREGSTIGLTKVWTAEECDQAYVLASRYD--PEVLCEEFIEGDET 192

Query: 178 TCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           TC V+G      +L V  I  P+ + Y Y+ KY + ++ +  P+ +P +   E++R+   
Sbjct: 193 TCPVLGTGEGAHALPVIRIVAPEGN-YDYQNKYFTDDTKYHCPSGLPAEEEAEIRRIVVR 251

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           A + +GCRG SR+D +     RK F LEIN  PGMT  S+ P  A   G S+  L L ++
Sbjct: 252 AFRTLGCRGWSRADIMIRASDRKPFLLEINTSPGMTGHSLVPMSARAIGVSYENLCLGIL 311

Query: 294 EDAS 297
             A+
Sbjct: 312 ASAA 315


>gi|254426888|ref|ZP_05040595.1| D-ala D-ala ligase N-terminal domain protein, putative [Alcanivorax
           sp. DG881]
 gi|196193057|gb|EDX88016.1| D-ala D-ala ligase N-terminal domain protein, putative [Alcanivorax
           sp. DG881]
          Length = 307

 Score =  168 bits (426), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 107/299 (35%), Positives = 161/299 (53%), Gaps = 16/299 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-VDRSVGLVLAHLKPDLAFNVLH 59
           +AVL GG S+ER VSL SG A    L + G     +D  D+SV  +      D AF  LH
Sbjct: 16  VAVLAGGKSAERPVSLKSGAAVHQGLRNLGLIAELVDPADKSVETLKGF---DAAFIALH 72

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G  GEDG++Q +LE LEIPYT SG++ASA+ MDK+R+KQ+    G+P     +  R   D
Sbjct: 73  GRGGEDGVIQGVLEHLEIPYTGSGVMASAIGMDKVRTKQLWKGAGLPTPAFYVSGRDEAD 132

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
               +  P ++KP   GSS+G+      + +   L+ +  ++    +L+E +V+G E T 
Sbjct: 133 ----LGFPVIVKPAHEGSSIGMAKADNAEELAEALVAAEKFDQ--DVLVEAWVNGPEYTV 186

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
            V+GD +L    +  P + FY +E KY S ++ ++ PA +     + +++LA  A +  G
Sbjct: 187 AVLGDEALPAIRLQTPHA-FYDFEAKYQSDSTEYLCPAGLDDADEQALRQLALTAFRVAG 245

Query: 240 CRGISRSDFLFDPLSRKVFW--LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           CRG  R D + D   +   W  LE+N  PGMT  S+ P  A   G  F  L+  ++ DA
Sbjct: 246 CRGWGRVDVMRDAQGQ---WQLLEVNTVPGMTDHSLVPMAAKATGRDFDVLVGEILLDA 301


>gi|303251842|ref|ZP_07338013.1| D-alanine--D-alanine ligase [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|307249143|ref|ZP_07531150.1| D-alanine--D-alanine ligase [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|302649272|gb|EFL79457.1| D-alanine--D-alanine ligase [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|306854431|gb|EFM86627.1| D-alanine--D-alanine ligase [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
          Length = 303

 Score =  168 bits (426), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 107/299 (35%), Positives = 166/299 (55%), Gaps = 11/299 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG+S EREVSL+SG A   AL+  G+ V  ID        L        FN+LHG
Sbjct: 8   IAVLFGGVSQEREVSLNSGAAVTEALKSLGYNVEGIDTKDFPIEKLKEKGIQRVFNILHG 67

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF-TMD 119
             GE+G++Q  LE + IPYT  G++ASA+++DK R+K +  +  +P    ++V R   +D
Sbjct: 68  GIGENGVLQGALEQMGIPYTGCGVMASAVTLDKFRTKLMWQAVDLPTADMVVVRRGEAVD 127

Query: 120 SQHLISP---PYVIKPLKGGSSLGIIVIKK-DQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175
           S+ +I+    P  +KP   GSS+G+  +K  +Q +P       +      +L+E ++ G 
Sbjct: 128 SEQIIAKLGLPVFVKPSSEGSSVGVTKVKTVEQLLP---AVEEALKFDSIVLVEAFLAGK 184

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
           E +  V+    L   +I +P+ +FY Y  KY S N+ +++PA +  D   EV  L   A+
Sbjct: 185 EYSVPVLDGQVLPAVQI-IPEGEFYDYHAKYISDNTQYLVPA-LSDDRQAEVAELVKAAY 242

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           + +GCRG SR D + D  +     +E+N  PGMT  SIFP+ AA  G  F +L+  ++E
Sbjct: 243 EVVGCRGWSRIDVMEDA-NGNFNLVEVNTCPGMTSHSIFPKSAATVGIPFEKLVERVLE 300


>gi|297539589|ref|YP_003675358.1| D-alanine/D-alanine ligase [Methylotenera sp. 301]
 gi|297258936|gb|ADI30781.1| D-alanine/D-alanine ligase [Methylotenera sp. 301]
          Length = 312

 Score =  168 bits (426), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 113/310 (36%), Positives = 165/310 (53%), Gaps = 31/310 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP-------DL 53
           +AVL+GG S EREVSL SG A  +AL+  G      D            KP       D 
Sbjct: 13  VAVLLGGKSGEREVSLKSGGAVLAALQAQGIDAHGFD---------PRDKPLHDLEVFDR 63

Query: 54  AFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            F  LHG +GEDG +Q  LE+L IPYT SG++ASA+ MDK R+K +  +  V + P   +
Sbjct: 64  VFINLHGRYGEDGCIQGALEMLHIPYTGSGVMASAIGMDKWRTKLLWRAMNV-ITPDFEL 122

Query: 114 NRFTMDSQHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI-E 169
              T D   +   +  P  +KP   GSSLGI  +K+   +      ++     D L+I E
Sbjct: 123 VTATSDFAAIEKSLGLPLFVKPANEGSSLGISKVKQAGGLQAAYKIAA---EADPLVIAE 179

Query: 170 QYVDGIELTCGVMGDA-----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           ++++G E T G++GD      +L +  I VPK++FY +E KY   ++ ++ P  +  +  
Sbjct: 180 KFINGGEYTVGIIGDGKGGYQALPIIRI-VPKNEFYDFEAKYLRDDTEYLCPCGLSAEKE 238

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
            ++Q+ A  A + IGCRG  R DFL D      F LE+N  PGMT  S+ P  A  AG S
Sbjct: 239 AQIQQEALQAFRTIGCRGWGRVDFLMDDAGNHYF-LEVNTSPGMTDHSLVPMAAKAAGIS 297

Query: 285 FRELLLWMVE 294
           F +L++ ++E
Sbjct: 298 FEQLVVRILE 307


>gi|51243910|ref|YP_063794.1| D-alanyl-D-alanine ligase [Desulfotalea psychrophila LSv54]
 gi|81643437|sp|Q6ASD8|DDL_DESPS RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|50874947|emb|CAG34787.1| probable D-alanyl-D-alanine ligase [Desulfotalea psychrophila
           LSv54]
          Length = 322

 Score =  168 bits (425), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 115/305 (37%), Positives = 166/305 (54%), Gaps = 15/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP-DLAFNVLH 59
           +A++ GG S EREVSL+        L+   + VS+ D    +  + A     D AF +LH
Sbjct: 11  IALIAGGTSGEREVSLTGADGVERILDKEKYLVSRYDSATDLPRLAADAASIDFAFILLH 70

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--SILVNRFT 117
           G  GEDG +Q  L+LL IPY  SG+L SAL+MDK  +K+   +  +PV    +I    F 
Sbjct: 71  GLHGEDGTIQGFLDLLGIPYQGSGVLGSALAMDKDLAKEFYYNAELPVADWHTIAAGDFF 130

Query: 118 MDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
             S+ LI     P V+KP   GSS+GI +   ++ +   +  +   + G  +++EQ++ G
Sbjct: 131 Y-SEELIEDLGLPLVVKPACAGSSIGISLAHTEEELLAGINHARDCSAG-AIMVEQFIKG 188

Query: 175 IELTCGVMGD---ASLDVTEIAVP--KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
            ELTC V+G+    +L V EI VP  K  F+ YE KY    S  + PA I   + ++VQ 
Sbjct: 189 RELTCAVLGNDDLQALPVLEI-VPGDKYAFFDYEAKYQPGASEEICPALIADALREQVQD 247

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
            A  AHQA+  RG SR+DF++     K++ LE N  PGMT  SI P+ AA  G  F  LL
Sbjct: 248 HAIRAHQALRLRGYSRTDFIYGE-DGKLYLLETNTIPGMTETSILPQEAAATGMDFPSLL 306

Query: 290 LWMVE 294
             ++E
Sbjct: 307 DTLIE 311


>gi|325203531|gb|ADY98984.1| D-alanine--D-alanine ligase B [Neisseria meningitidis M01-240355]
          Length = 304

 Score =  168 bits (425), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 113/307 (36%), Positives = 168/307 (54%), Gaps = 23/307 (7%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD---LAFNV 57
           +AVLMGG SSERE+SL SG A  +AL+  G      D   +    L+ LK      AFN+
Sbjct: 7   VAVLMGGFSSEREISLDSGTAILNALKSKGIDAYAFDPKETP---LSELKAQGFQTAFNI 63

Query: 58  LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-SILVNRF 116
           LHG +GEDG VQ  LELL I YT SG+ ASA+ MDK R K +  + G+PV   ++L +  
Sbjct: 64  LHGTYGEDGAVQGALELLGISYTGSGVAASAIGMDKYRCKLIWQALGLPVPEFAVLHDDT 123

Query: 117 TMDS-QHLISPPYVIKPLKGGSSLGIIVIKKDQSIP-----LDLLQSSSWNHGDQLLIEQ 170
             D+ +  +  P  +KP   GSS+G++ +K+   +      L  LQ        +++ E+
Sbjct: 124 DFDAVEEKLGLPMFVKPAAEGSSVGVVKVKEKGRLKSVYEELKHLQG-------EIIAER 176

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR- 229
           ++ G E +C V+    L    I +P ++FY YE KY+  ++ +  P++   +  + + R 
Sbjct: 177 FIGGGEYSCPVLNGKGLPGIHI-IPATEFYDYEAKYNRNDTIYQCPSEDLTEAEESLMRE 235

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           LA    QAIG  G  R DFL D    K++ LEIN  PGMT  S+ P+ AA  G  F +L 
Sbjct: 236 LAVRGAQAIGAEGCVRVDFLKD-TDGKLYLLEINTLPGMTSHSLVPKSAAVTGVGFADLC 294

Query: 290 LWMVEDA 296
           + +++ A
Sbjct: 295 IEILKTA 301


>gi|294338820|emb|CAZ87154.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetase B)
           (D-Ala-D-Ala ligase B) [Thiomonas sp. 3As]
          Length = 378

 Score =  168 bits (425), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 103/296 (34%), Positives = 159/296 (53%), Gaps = 9/296 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG+S+EREVSL SGK   +AL+  G      D        L       AF  LHG
Sbjct: 15  VAVLMGGLSAEREVSLMSGKGVLAALQSRGVDAFAFDPSVDDLAALKSFGAQRAFINLHG 74

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV--VSSCGVPVCPSILVNRFTM 118
            +GEDG VQ  LELL IPYT  G+LASAL++DK  +K++    +   P    +       
Sbjct: 75  RWGEDGTVQGALELLGIPYTGPGVLASALAIDKAMTKRLWHFENLSTPKWREVGTLIEAR 134

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   +  P + K    GS+LG+     +  +    L+++ ++   ++L+EQ+++G E+T
Sbjct: 135 AAAAELGFPLIFKATHEGSTLGLKRADSEAEVQAAYLEAARFD--SRVLVEQFIEGDEVT 192

Query: 179 CGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
           C V+G      +L +  I  P  + Y YE KY S ++ ++ P+++P D    +Q L   +
Sbjct: 193 CAVIGAGDQARALPLIRIVAPGGN-YDYEHKYFSDDTRYICPSELPADEEARIQDLVLRS 251

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           ++ +GCRG +R+D +     R+ F LEIN  PGMT  S+ P  A  AG  + +L L
Sbjct: 252 YRTLGCRGWARADVMIRATDRQPFLLEINTSPGMTSHSLVPMAARVAGLEYADLCL 307


>gi|319778482|ref|YP_004129395.1| D-alanine--D-alanine ligase [Taylorella equigenitalis MCE9]
 gi|317108506|gb|ADU91252.1| D-alanine--D-alanine ligase [Taylorella equigenitalis MCE9]
          Length = 312

 Score =  168 bits (425), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 100/307 (32%), Positives = 174/307 (56%), Gaps = 15/307 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL SG+   +AL+  G+ +   D+     L L +   DLAF  LHG
Sbjct: 7   IAVLYGGNSAEREVSLMSGQGVGNALKSRGYNIELFDIANRDLLELKNF--DLAFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--M 118
            +GEDG +Q  LELL+IPYT  G+++S++ M+K+ SK++    G+P     +V  +    
Sbjct: 65  KYGEDGCIQGFLELLKIPYTGPGVMSSSVGMNKIVSKKIFIHEGIPTPEFRVVRDYEGLE 124

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   I  P ++KP + GS++G+  +     +     +S  ++  +++L+E+ ++G ELT
Sbjct: 125 KATQEIGYPIIVKPPQEGSTIGLKKVHSQDELTEAFNESIKFD--EEMLVEKCIEGRELT 182

Query: 179 CGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
             ++G +    +L + EI  P  + Y YE KY+  ++ ++ PAK+  ++ + ++ +   A
Sbjct: 183 VAIIGKSPDTRALPIIEIVTPDGN-YDYEQKYTRDDTQYICPAKLDENLARNIENICIKA 241

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           + ++ C+G SR D + D       W LEIN  PGMT  S+ P  A   G S+ ++   ++
Sbjct: 242 YDSLECQGWSRVDVMLD--KNNCPWVLEINTSPGMTSHSLVPMAAKAIGLSYEDICEEIL 299

Query: 294 EDASCLR 300
           + A CL+
Sbjct: 300 KTA-CLK 305


>gi|107100005|ref|ZP_01363923.1| hypothetical protein PaerPA_01001026 [Pseudomonas aeruginosa PACS2]
          Length = 319

 Score =  168 bits (425), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 108/303 (35%), Positives = 166/303 (54%), Gaps = 8/303 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL SG     +L  AG     IDV   +   L   K D AF +LHG
Sbjct: 21  VAVLFGGKSAEREVSLKSGAMVLQSLLAAGVDAFGIDVGEDLLQRLVEEKIDRAFIILHG 80

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-SILVNR-FTM 118
             GEDG +Q +LE   IPYT SG+LASAL+MDK+R+K+V  S G+P    ++L N     
Sbjct: 81  RGGEDGSMQGLLECAGIPYTGSGVLASALAMDKLRTKRVWLSLGLPTPDYAVLANEDDCR 140

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           ++   +  P ++KP   GSS+G+  +     +     +++ ++   Q+L+EQ++ G E T
Sbjct: 141 EAAQRLGFPLIVKPAHEGSSIGMAKVGGLDELIAAWREAARYDS--QVLVEQWISGPEFT 198

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +    L    +  P + FY Y+ KY + ++ + +P  +     +E++ L   A  A+
Sbjct: 199 VATLRGQVLPAIRLGTPHT-FYDYDAKYLASDTRYQVPCGLDEAKERELKELTARACDAL 257

Query: 239 GCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           G +G  R+D + D   R  FW LE+N  PGMT  S+ P  A  AG  F++L+L ++ D+ 
Sbjct: 258 GIQGWGRADVMQDAEGR--FWLLEVNTAPGMTDHSLVPMAARAAGLDFQQLVLAILADSR 315

Query: 298 CLR 300
             R
Sbjct: 316 EAR 318


>gi|182682480|ref|YP_001830640.1| D-alanine--D-alanine ligase [Xylella fastidiosa M23]
 gi|182632590|gb|ACB93366.1| D-alanine--D-alanine ligase [Xylella fastidiosa M23]
 gi|307578761|gb|ADN62730.1| D-alanine--D-alanine ligase [Xylella fastidiosa subsp. fastidiosa
           GB514]
          Length = 320

 Score =  168 bits (425), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 109/309 (35%), Positives = 172/309 (55%), Gaps = 27/309 (8%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL SG+     L   G     +D   ++   L   + D  FNVLHG
Sbjct: 21  VAVLLGGTSAEREVSLLSGRNVLEVLRMRGVDAQSVDGVPALAQALVERRFDRVFNVLHG 80

Query: 61  NFG--EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP--------VCPS 110
           + G  EDG+VQ +++   +PYT S +L SALSMDK+R+KQV  + G+P        VC +
Sbjct: 81  HNGGGEDGVVQGLMQAFGVPYTGSDVLGSALSMDKVRTKQVWLALGLPTPRYASLSVCAT 140

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS---SWNHGDQLL 167
            +  R  ++   ++  P +IKP K GSS+G+      +   L+ L+ +   +  +  +LL
Sbjct: 141 AVEVRKAVE---MLGFPVIIKPAKEGSSVGV-----SRVFALEHLEEAVALAARYEGELL 192

Query: 168 IEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD--IYK 225
           +EQ ++G ELT  ++ + +L    I VP+  +Y Y  KY + ++ +V P    LD     
Sbjct: 193 MEQLIEGDELTVSILDEMALPSIRI-VPQGQWYDYNAKYLAEDTQYVCPG---LDDVAEA 248

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285
           E+ +LA  A  ++GCRG  R D + +  S + F LE+N  PGMT  S+ P+ A+  G  F
Sbjct: 249 EIAQLALAAFHSVGCRGWGRVDVMRERGSGRFFLLEVNTAPGMTTHSLVPKAASQLGMGF 308

Query: 286 RELLLWMVE 294
            +L+  ++E
Sbjct: 309 DDLVWRILE 317


>gi|114321339|ref|YP_743022.1| D-alanine--D-alanine ligase [Alkalilimnicola ehrlichii MLHE-1]
 gi|123026549|sp|Q0A6K5|DDL_ALHEH RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|114227733|gb|ABI57532.1| D-alanine--D-alanine ligase [Alkalilimnicola ehrlichii MLHE-1]
          Length = 311

 Score =  167 bits (424), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 108/293 (36%), Positives = 162/293 (55%), Gaps = 14/293 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP-DLAFNVLH 59
           +AVLMGG S+ERE+SL SG+A   AL   G     +D   +  + LA L   D AF  LH
Sbjct: 12  VAVLMGGDSAEREISLISGRAVFEALRRRGVDAEAVD---TAQVALAELTGFDRAFIALH 68

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G  GEDG++Q  LE L +PYT SG+L  A+ MDK R+K +     +PV P  L+ R   +
Sbjct: 69  GRGGEDGVIQGALEALGVPYTGSGVLGCAIGMDKWRTKLLWRGAELPVPPGALL-RPETN 127

Query: 120 SQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
            Q LI     P +IKP   GSS+G+  +++ + +     +++ ++  D +L E++++G E
Sbjct: 128 RQALIGSVGLPLMIKPAHEGSSIGMAKVERPEELEAARAEAARYD--DLVLAERWIEGGE 185

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
            T  ++G+ +L    +  P+  FY +E KY S ++ +  PA +     +++++LA  A +
Sbjct: 186 YTVAILGEEALPAIRLETPRG-FYDFEAKYRSGDTRYHCPAGLTEAEEQQIRQLALDAFR 244

Query: 237 AIGCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFREL 288
             G  G  R DF+ D   R  FW LEIN  PGMT  S+ P  A   G  F EL
Sbjct: 245 VAGASGWGRVDFMRDRQGR--FWLLEINTIPGMTDHSLVPMAARAVGIDFDEL 295


>gi|313106940|ref|ZP_07793143.1| D-alanine--D-alanine ligase [Pseudomonas aeruginosa 39016]
 gi|310879645|gb|EFQ38239.1| D-alanine--D-alanine ligase [Pseudomonas aeruginosa 39016]
          Length = 319

 Score =  167 bits (424), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 109/304 (35%), Positives = 164/304 (53%), Gaps = 10/304 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL SG     +L  AG     IDV   +   L   K D AF +LHG
Sbjct: 21  VAVLFGGKSAEREVSLKSGAMVLQSLLAAGVDAFGIDVGEDLLQRLVEEKIDRAFIILHG 80

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFT 117
             GEDG +Q +LE   IPYT SG+LASAL+MDK+R+K+V  S G+P  P   V       
Sbjct: 81  RGGEDGSMQGLLECAGIPYTGSGVLASALAMDKLRTKRVWLSLGLPT-PDYAVLASEDDC 139

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            D+   +  P ++KP   GSS+G+  +     +     +++ ++   Q+L+EQ++ G E 
Sbjct: 140 RDAAQRLGFPLIVKPAHEGSSIGMAKVGGLDELIAAWREAARYDS--QVLVEQWISGPEF 197

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           T   +    L    +  P + FY Y+ KY + ++ + +P  +     +E++ L   A  A
Sbjct: 198 TVATLRGQVLPAIRLGTPHT-FYDYDAKYLASDTRYQVPCGLDEAKERELKELTARACDA 256

Query: 238 IGCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +G +G  R+D + D   R  FW LE+N  PGMT  S+ P  A  AG  F++L+L ++ D+
Sbjct: 257 LGIQGWGRADVMQDAEGR--FWLLEVNTAPGMTDHSLVPMAARAAGLDFQQLVLAILADS 314

Query: 297 SCLR 300
              R
Sbjct: 315 REAR 318


>gi|322834418|ref|YP_004214445.1| D-alanine/D-alanine ligase [Rahnella sp. Y9602]
 gi|321169619|gb|ADW75318.1| D-alanine/D-alanine ligase [Rahnella sp. Y9602]
          Length = 306

 Score =  167 bits (424), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 105/303 (34%), Positives = 165/303 (54%), Gaps = 13/303 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+ER+VSL SG A  + L ++G     ID       +L        F  LHG
Sbjct: 5   VAVLLGGTSAERDVSLQSGAAVLAGLRESGVDAHGIDTKTFNVALLKEEGYSKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119
             GEDG +Q +LE + +PYT SG++ASAL+MDK R+K V  + G+PV P + ++R  ++ 
Sbjct: 65  RGGEDGTLQGLLEQIGLPYTGSGVMASALTMDKFRTKLVWQALGLPVTPFVALHRAQIEE 124

Query: 120 -SQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
             Q  ++        P ++KP + GSS+G+  +  ++ + L  LQ   + H D +LIE++
Sbjct: 125 AGQGALAAKIAELGLPVIVKPSREGSSVGMSKVTTEKEL-LPALQ-EGFRHDDNVLIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G   +    I  P   FY Y+ KY S  + +  P+ +     +++  LA
Sbjct: 183 LSGPEYTVAIVGSQVMPSIRIQ-PAGTFYDYQAKYLSDETQYFCPSGLSEAQEQQLTALA 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A+QA+ C G  R D + D        LE+N  PGMT  S+ P  A +AG SF +L+  
Sbjct: 242 LQAYQALDCSGWGRVDVMQDG-DGNFNLLEVNTSPGMTSHSLVPMAAKHAGLSFPQLVFR 300

Query: 292 MVE 294
           ++E
Sbjct: 301 ILE 303


>gi|238925283|ref|YP_002938800.1| D-alanine--D-alanine ligase [Eubacterium rectale ATCC 33656]
 gi|238876959|gb|ACR76666.1| D-alanine--D-alanine ligase [Eubacterium rectale ATCC 33656]
          Length = 369

 Score =  167 bits (424), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 112/345 (32%), Positives = 172/345 (49%), Gaps = 55/345 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-----DRSVGLV---------- 45
           + VL GG+S+ER+VS  +G   A AL++ G KV  +DV     DR   L           
Sbjct: 21  IVVLAGGLSTERDVSFKTGSMVAKALKENGHKVILLDVFMGYSDREEDLTGIFDRADEIS 80

Query: 46  ------------LAHLKP---------------------DLAFNVLHGNFGEDGLVQAIL 72
                       LA +K                      D+ F  LHG  GE+G +QA  
Sbjct: 81  VQVSDIPTEAPDLAKVKASRKDQSPCFFGPNVIKMCQMADIVFMALHGENGENGKIQAAF 140

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD---SQHLISPPYV 129
           +L  + YT S  L+SA++M+K  SKQ   + G+P    I + R T     ++  ++ P V
Sbjct: 141 DLFGVKYTGSDYLSSAIAMNKETSKQFFLANGIPTPKGISMTRATRQDDITKLDLTLPCV 200

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           +KP  GGSS+G+ +++        L  +  W +  +L+IE++V G E + GV+   +L +
Sbjct: 201 VKPCCGGSSIGVTIVRDAAEFKAALDDAFKWEN--ELVIEEFVQGREFSVGVIEGKALPI 258

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
            EIA PK  FY Y+ KY + ++    PA++P  + K++Q  A    + IG    SRSDFL
Sbjct: 259 IEIA-PKEGFYDYKNKYKAGSTVETCPAELPEQVTKDMQHYAEEVARVIGLDTYSRSDFL 317

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            +    ++F LE N  PGMTP S+ P+ AA  G SF +L   +++
Sbjct: 318 LND-KNEMFCLEANTLPGMTPTSLLPQEAAVIGMSFNQLCEHLID 361


>gi|194336691|ref|YP_002018485.1| D-alanine/D-alanine ligase [Pelodictyon phaeoclathratiforme BU-1]
 gi|229485970|sp|B4SAI2|DDL_PELPB RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|194309168|gb|ACF43868.1| D-alanine/D-alanine ligase [Pelodictyon phaeoclathratiforme BU-1]
          Length = 360

 Score =  167 bits (424), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 105/290 (36%), Positives = 163/290 (56%), Gaps = 31/290 (10%)

Query: 17  SSGKACASAL----EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAIL 72
           SS +A A AL    E+A  K   +D  R++G+       ++AF  LHG +GEDG +Q  L
Sbjct: 70  SSPEAAAMALDRMVEEAEQKPFNLDF-RAIGI-------EVAFLTLHGTYGEDGRIQGFL 121

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI--LVNRFTMDSQHLISP---- 126
           +   IPYT  G+LASAL+MDK  +K  V+  G+ V PSI  L   +  D++ + S     
Sbjct: 122 DTCNIPYTGCGVLASALTMDKALTKLCVADAGIAVAPSITLLSAEYHADTEKVHSRIEEK 181

Query: 127 ---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
              P+ +KP   GSS+GI  +   + +P  L  + S +   ++++E+ + G E+   V+G
Sbjct: 182 FIYPFFVKPANLGSSIGISKVHHREQLPAALKSACSLD--SKIVVEKAITGREIEVAVLG 239

Query: 184 DASLDVTEIAV-----PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           +   D  E++V     P SDFY Y  KY   ++   +PA+IP ++  EV+ +A  A++A+
Sbjct: 240 N---DEPEVSVCGEIEPGSDFYDYHDKYIHNSAKLFIPARIPDEMQSEVRSIALKAYKAL 296

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           GCRG+SR DF  D     +   E+N  PG T +S+FP + A +G+SF EL
Sbjct: 297 GCRGMSRIDFFVDEKRGTIVLNEVNTIPGFTDISMFPRLMAASGHSFPEL 346


>gi|254967044|gb|ACT97558.1| putative D-alanine-D-alanine ligase [uncultured organism]
          Length = 383

 Score =  167 bits (424), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 112/345 (32%), Positives = 172/345 (49%), Gaps = 55/345 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-----DRSVGLV---------- 45
           + VL GG+S+ER+VS  +G   A AL++ G KV  +DV     DR   L           
Sbjct: 21  IVVLAGGLSTERDVSFKTGSMVAKALKENGHKVILLDVFMGYSDREEDLTGIFDRADEIS 80

Query: 46  ------------LAHLKP---------------------DLAFNVLHGNFGEDGLVQAIL 72
                       LA +K                      D+ F  LHG  GE+G +QA  
Sbjct: 81  VQVSDIPTEAPDLAKVKASRKDQSPCFFGPNVIKICQMADIVFMALHGENGENGKIQAAF 140

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD---SQHLISPPYV 129
           +L  + YT S  L+SA++M+K  SKQ   + G+P    I + R T     ++  ++ P V
Sbjct: 141 DLFGVKYTGSDYLSSAIAMNKETSKQFFLANGIPTPKGISMTRATRQDDITKLDLTLPCV 200

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           +KP  GGSS+G+ +++        L  +  W +  +L+IE++V G E + GV+   +L +
Sbjct: 201 VKPCCGGSSIGVTIVRDAAEFKAALDDAFKWEN--ELVIEEFVQGREFSVGVIEGKALPI 258

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
            EIA PK  FY Y+ KY + ++    PA++P  + K++Q  A    + IG    SRSDFL
Sbjct: 259 IEIA-PKEGFYDYKNKYKAGSTVETCPAELPEQVTKDMQHYAEEVARVIGLDTYSRSDFL 317

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            +    ++F LE N  PGMTP S+ P+ AA  G SF +L   +++
Sbjct: 318 LND-KNEMFCLEANTLPGMTPTSLLPQEAAVIGMSFNQLCEHLID 361


>gi|212704379|ref|ZP_03312507.1| hypothetical protein DESPIG_02434 [Desulfovibrio piger ATCC 29098]
 gi|212672204|gb|EEB32687.1| hypothetical protein DESPIG_02434 [Desulfovibrio piger ATCC 29098]
          Length = 304

 Score =  167 bits (424), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 105/294 (35%), Positives = 158/294 (53%), Gaps = 5/294 (1%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP-DLAFNVLHGN 61
           ++ GG SSEREVSL+  +    AL   G  V+  D+  +   +L   +  D A   LHG+
Sbjct: 5   LIAGGWSSEREVSLTGARGMQEALLKRGHAVTFFDLLENFDELLETARQHDFALINLHGS 64

Query: 62  FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-SILVNRFTMDS 120
            GEDGLVQA+LE  + PY  SG   S L+++K  +KQ+    G+P      L  R     
Sbjct: 65  PGEDGLVQAMLEKADCPYQGSGPSGSFLALNKAAAKQIFRMAGLPTADWEFLPVRPAEGW 124

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  +  P  +K   GGSSL +      Q   LD +    +  G+ +LIE  + G E+TCG
Sbjct: 125 EPRLPWPLFVKTTTGGSSLRLGRATNRQE--LDAIMDEIFAAGEGVLIEPQLPGKEITCG 182

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           ++G+ ++    I     D++ YE KY++  +  + PA +   +  EVQRLA  AH+A+G 
Sbjct: 183 ILGEEAMPPILIEPVAGDYFDYESKYATGGARELCPAPVSPAVTAEVQRLALAAHKALGL 242

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           +G SR+DF+  P    +  LE+N  PGMTP S+ P+ AA  G  F +LL  ++E
Sbjct: 243 KGYSRADFILGP-DDSLHLLEVNTLPGMTPTSLVPQEAAQLGMDFGQLLEKLIE 295


>gi|291524420|emb|CBK90007.1| D-alanine--D-alanine ligase [Eubacterium rectale DSM 17629]
          Length = 351

 Score =  167 bits (424), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 112/345 (32%), Positives = 172/345 (49%), Gaps = 55/345 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-----DRSVGLV---------- 45
           + VL GG+S+ER+VS  +G   A AL++ G KV  +DV     DR   L           
Sbjct: 3   IVVLAGGLSTERDVSFKTGSMVAKALKENGHKVILLDVFMGYSDREEDLTGIFDRADEIS 62

Query: 46  ------------LAHLKP---------------------DLAFNVLHGNFGEDGLVQAIL 72
                       LA +K                      D+ F  LHG  GE+G +QA  
Sbjct: 63  VQVSDIPTEAPDLAKVKASRKDQSPCFFGPNVIKMCQMADIVFMALHGENGENGKIQAAF 122

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD---SQHLISPPYV 129
           +L  + YT S  L+SA++M+K  SKQ   + G+P    I + R T     ++  ++ P V
Sbjct: 123 DLFGVKYTGSDYLSSAIAMNKETSKQFFLANGIPTPKGISMTRATRQDDITKLDLTLPCV 182

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           +KP  GGSS+G+ +++        L  +  W +  +L+IE++V G E + GV+   +L +
Sbjct: 183 VKPCCGGSSIGVTIVRDAAEFKAALDDAFKWEN--ELVIEEFVQGREFSVGVIEGKALPI 240

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
            EIA PK  FY Y+ KY + ++    PA++P  + K++Q  A    + IG    SRSDFL
Sbjct: 241 IEIA-PKEGFYDYKNKYKAGSTVETCPAELPEQVTKDMQHYAEEVARVIGLDTYSRSDFL 299

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            +    ++F LE N  PGMTP S+ P+ AA  G SF +L   +++
Sbjct: 300 LND-KNEMFCLEANTLPGMTPTSLLPQEAAVIGMSFNQLCEHLID 343


>gi|116621914|ref|YP_824070.1| D-alanine--D-alanine ligase [Candidatus Solibacter usitatus
           Ellin6076]
 gi|122939638|sp|Q023Q5|DDL_SOLUE RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|116225076|gb|ABJ83785.1| D-alanine--D-alanine ligase [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 325

 Score =  167 bits (424), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 108/311 (34%), Positives = 176/311 (56%), Gaps = 19/311 (6%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR----SVGLVL----AHLKPD 52
           +AV+ GG + E EVS+ S K+  + L+   ++  +  +D+    S G +L    AH   D
Sbjct: 5   VAVIYGGRTGEHEVSVRSAKSILAGLDCEKYETIEYFIDQNGKWSPGPILPEPGAHANID 64

Query: 53  LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
           + F VLHG FGEDG VQ +LEL ++PY  +G+L SA+SMDK   K+V     +P+   + 
Sbjct: 65  VVFPVLHGTFGEDGTVQGLLELADLPYVGAGVLGSAVSMDKEMMKRVCKERMLPIVDYVT 124

Query: 113 VNRFT---MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
           V R T   +D+   +  P  +KP   GSS+GI     +Q   L+   S +  +  ++++E
Sbjct: 125 VTRQTPSIVDACRRLPFPMFVKPANLGSSVGISKAHDEQE--LEAAFSLAKQYDRKIIVE 182

Query: 170 QYVDGIELTCGVMGD----ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
           + ++G EL C V+G+    ASL   EI +P  +FY YE KY    +   +PA +P +   
Sbjct: 183 RGIEGRELECSVLGNEAPMASLPC-EI-LPSREFYDYEDKYLLDMARTQVPADLPGERTD 240

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285
           E++RLA   ++A+ C G++R DF  +  + +++  EIN  PG T +S++P+M  ++G  F
Sbjct: 241 EIRRLAVECYRAVECEGMARVDFFLEHGTNRLYINEINTIPGFTSISMYPKMWEHSGIPF 300

Query: 286 RELLLWMVEDA 296
             LL  ++E A
Sbjct: 301 CTLLDQLIEFA 311


>gi|239813928|ref|YP_002942838.1| D-alanine--D-alanine ligase [Variovorax paradoxus S110]
 gi|239800505|gb|ACS17572.1| D-alanine/D-alanine ligase [Variovorax paradoxus S110]
          Length = 323

 Score =  167 bits (424), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 104/308 (33%), Positives = 163/308 (52%), Gaps = 15/308 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+ERE+SL SG     AL   G      D      + L        F  LHG
Sbjct: 12  VAVLFGGSSAEREISLLSGNGVLEALRSRGVDAHAFDPAERDLVELRREGFARCFIALHG 71

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG VQ  LELL IPYT SG++AS+++MDK+ +K++  + G+P  P  +   F   S
Sbjct: 72  RHGEDGTVQGALELLGIPYTGSGVMASSVAMDKVMTKRIWQADGLPT-PRYVRLAFDQQS 130

Query: 121 QHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
           +  +         P ++KP + GSS+G+  ++    +   +  S+ ++    +L E++++
Sbjct: 131 REQVRAVPDVLGLPLIVKPPREGSSIGVTKVEGYSQMQDAVTLSARYDA--DVLCEEFIE 188

Query: 174 GIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           G E+TC V+G      +L V  IA P+   Y Y+ KY + +  +  P+ +P     E+QR
Sbjct: 189 GEEVTCAVLGQGLDARALPVVRIAAPEG-AYDYQNKYFTDDVKYHCPSGLPEAEEHEIQR 247

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           +   A+  +GCRG  R+D +     RK F LE+N  PGMT  S+ P  A  +G ++ +L 
Sbjct: 248 ITLAAYHTLGCRGWGRADVMIRASDRKPFLLEMNTSPGMTSHSLVPMSARASGIAYEDLC 307

Query: 290 LWMVEDAS 297
           L ++  AS
Sbjct: 308 LRVLASAS 315


>gi|172059551|ref|YP_001807203.1| D-alanine--D-alanine ligase [Burkholderia ambifaria MC40-6]
 gi|229463734|sp|B1YSS6|DDL_BURA4 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|171992068|gb|ACB62987.1| D-alanine--D-alanine ligase [Burkholderia ambifaria MC40-6]
          Length = 313

 Score =  167 bits (424), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 104/301 (34%), Positives = 167/301 (55%), Gaps = 19/301 (6%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-VDRSVGLVLAHLKPD---LAFN 56
           +AVL GG S+EREVSL+SG+     L DAG      D  +R     L+ LK +    AFN
Sbjct: 12  VAVLFGGESAEREVSLTSGRLVLQGLRDAGIDAHPFDPAERP----LSALKDEGFVRAFN 67

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR- 115
            LHG +GE+G +Q  L+   I YT SG+L SAL +DK R+K V    GVP  P   V R 
Sbjct: 68  ALHGGYGENGQIQGALDFYGIRYTGSGVLGSALGLDKFRTKLVWQQTGVPTPPFETVMRG 127

Query: 116 --FTMDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
             +   +  +++    P  +KP   GSS+ ++ +K   ++P  L ++++  H   +++E+
Sbjct: 128 DDYAARATDIVAKLGLPLFVKPASEGSSVAVLKVKTADALPAALSEAAT--HDKIVIVEK 185

Query: 171 YVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
            ++ G E T  + GD  L + +I VP  +FY Y  KY + ++ +++P  +P +   E++R
Sbjct: 186 SIEGGGEYTACIAGDLDLPLIKI-VPAGEFYDYHAKYVANDTQYLIPCGLPAEQETELKR 244

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           +A  A   +GC    R+DF+ D  +   ++LE+N  PGMT  S+ P+ A   G  + EL+
Sbjct: 245 IARRAFDVLGCTDWGRADFMLD-AAGNAYFLEVNTAPGMTDHSLPPKAARSIGIGYSELV 303

Query: 290 L 290
           +
Sbjct: 304 V 304


>gi|46578750|ref|YP_009558.1| D-alanine--D-alanine ligase [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|81567261|sp|Q72F80|DDL_DESVH RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|46448162|gb|AAS94817.1| D-alanine--D-alanine ligase [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|311232618|gb|ADP85472.1| D-alanine/D-alanine ligase [Desulfovibrio vulgaris RCH1]
          Length = 303

 Score =  167 bits (423), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 104/295 (35%), Positives = 162/295 (54%), Gaps = 7/295 (2%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSV-GLVLAHLKPDLAFNVLHGN 61
           ++ GG SSER+VSL+  +    AL   G  V+  D   S+ GL+ A    D AF  LHG+
Sbjct: 5   LIAGGWSSERDVSLAGARGIEKALCALGHDVTWFDPATSLDGLLEAASSHDFAFINLHGS 64

Query: 62  FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--SILVNRFTMD 119
            GEDGLVQA+L+    PY  SG   S L+++K  SKQ++   G+ + P  + L  R   D
Sbjct: 65  PGEDGLVQAMLDTAGCPYQGSGPAGSFLALNKAVSKQLLRRHGI-LTPDWAFLAARPAAD 123

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
            +  +  P  +KP  GGSSL +  + + + +   L   + + H  + ++E  + G+E+TC
Sbjct: 124 WEPGLGYPLFVKPNTGGSSLCLSRVTQPEGLAPAL--EAVFAHCGEAIVEPAIPGVEVTC 181

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
           GV+GD +L    I   +  F+ Y  KY+   +T + PA +P ++   VQ +   AH+ +G
Sbjct: 182 GVLGDTALPPILIRPAEGAFFDYTSKYTPGGATELCPAPLPAEVTAHVQDVTLRAHRLLG 241

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            RG SR+D++       +F LE+N  PGMTP S+ P+ AA  G  F  L+  ++E
Sbjct: 242 LRGYSRADYILRD-DGALFLLEVNTLPGMTPTSLVPQEAAAIGLDFPALIARLIE 295


>gi|121606304|ref|YP_983633.1| D-alanine--D-alanine ligase [Polaromonas naphthalenivorans CJ2]
 gi|190359203|sp|A1VST4|DDL_POLNA RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|120595273|gb|ABM38712.1| D-alanine--D-alanine ligase [Polaromonas naphthalenivorans CJ2]
          Length = 325

 Score =  167 bits (423), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 106/310 (34%), Positives = 168/310 (54%), Gaps = 21/310 (6%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-VDRSVGLVLAHLKPD---LAFN 56
           +AVLMGG S+ERE+SL SG     AL   G      D  +R +G     LK       F 
Sbjct: 11  VAVLMGGRSAEREISLMSGSGVVQALRSQGIDAHAFDPAERDLG----ELKTGGFARCFI 66

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116
            LHG FGEDG VQ  LELL IPYT SG++AS++++DK+ +K+++ S  +P    +L+ R 
Sbjct: 67  ALHGRFGEDGTVQGALELLGIPYTGSGVMASSMAIDKVMTKRLLLSESLPTPRYVLLRRG 126

Query: 117 TMDSQHL------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                 +      +  P ++KP + GSSLG+  + +  ++   +  +   +    +L EQ
Sbjct: 127 GYSPAQVDAIVDTLGLPLIVKPAREGSSLGLSKVTERAAMAAAVALAEKMDA--DILCEQ 184

Query: 171 YVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE 226
           ++ G E+TC V+G      +L V  I  P+ + Y Y+ KY +  + +++P  +P      
Sbjct: 185 FISGDEVTCPVLGTGEQARALPVIRIVAPEGN-YDYQNKYFTDTTQYLVPCGLPAGEEAA 243

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           +Q+L   A + + CRG +R+D + D  +RK + LEIN  PGMT  S+ P  A  AG S+ 
Sbjct: 244 IQQLVLQAFRTLNCRGWARADVMIDQATRKPYLLEINTSPGMTGHSLVPMSARAAGISYE 303

Query: 287 ELLLWMVEDA 296
            L + +++ A
Sbjct: 304 ALCVEVLKTA 313


>gi|110799404|ref|YP_695267.1| D-alanine--D-alanine ligase [Clostridium perfringens ATCC 13124]
 gi|110674051|gb|ABG83038.1| D-alanine--D-alanine ligase [Clostridium perfringens ATCC 13124]
          Length = 302

 Score =  167 bits (423), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 97/297 (32%), Positives = 163/297 (54%), Gaps = 8/297 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + ++MGGISSEREVSL+SG++  + ++   ++VS+I ++    ++      D A   LHG
Sbjct: 3   VGIIMGGISSEREVSLASGESIFNHIDKEKYEVSKIIINNKRDILEKVKGLDFALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN---RFT 117
            FGEDG VQA L++++IPY+  G L+S+L MDK  SK+V+ +  +     I V       
Sbjct: 63  KFGEDGTVQAFLDIMDIPYSGCGALSSSLCMDKNLSKKVLKAENIRTAKWITVKSIEEID 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            D    I  P  +KP  GGSS+    + K + I   +++     + ++++IE +V G E+
Sbjct: 123 YDKIEEIGYPVFVKPNNGGSSVATFKVYKKEDIKNSVME--GLKYYEEVIIESFVKGREI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC +       + EI   K+DFY Y+ KY++  + H LP ++   +Y EV+ +A    + 
Sbjct: 181 TCPIFNGELFPILEIK-SKADFYDYKQKYAANGAEH-LPVQLEKSLYDEVKEMALKTFEV 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           + C   +R D +        + LE+N  PGMT  S+FP+ A   G S+ + +  ++E
Sbjct: 239 LKCEVYARVDMIISEEGVP-YILEVNTLPGMTATSLFPQSAESRGISYSKFIDLIIE 294


>gi|238019067|ref|ZP_04599493.1| hypothetical protein VEIDISOL_00929 [Veillonella dispar ATCC 17748]
 gi|237864322|gb|EEP65612.1| hypothetical protein VEIDISOL_00929 [Veillonella dispar ATCC 17748]
          Length = 310

 Score =  167 bits (423), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 100/291 (34%), Positives = 160/291 (54%), Gaps = 12/291 (4%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLHGN 61
           VLMGG S E EVS  +G A A ALE  G+    ++++ R+V   +  L  ++ FN +HG 
Sbjct: 8   VLMGGPSKEAEVSRRTGAAIAEALESKGYNAQTLELNPRTVLKDIEALGGEVVFNAIHGR 67

Query: 62  FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ 121
           +GEDG +Q +LE+ EIPYT SGI+A A+ M+K  SK V     +P   S   N     ++
Sbjct: 68  YGEDGALQGLLEMAEIPYTGSGIMAHAVGMNKKVSKDVFKGANIPTAASESFNGNLESAE 127

Query: 122 HLI-------SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
            +I       + P V+K    GSS+G+ +++ +    L+   + +  +   L++EQ++DG
Sbjct: 128 AIIEHIRKDFTIPVVVKSATQGSSIGVTIVRDEAQ--LEAAVTEALKYDPILVVEQFLDG 185

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
            E T  V+   +L V EI  P S  Y Y+ KY+   + +++PA I  ++  E+QR+  L 
Sbjct: 186 REFTVSVLDGKALSVIEIR-PHSGEYDYKSKYTVGATEYLVPAPISEEMTAEMQRIGELV 244

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285
           ++ +   G+ R D + D  + K++ LE N  PGMT  S+ P+ A   G  F
Sbjct: 245 YREVQGSGVVRVDVMTDH-ADKMYVLEYNTVPGMTATSLVPKAAKEMGIDF 294


>gi|169634769|ref|YP_001708505.1| D-alanine--D-alanine ligase [Acinetobacter baumannii SDF]
 gi|229485850|sp|B0VNZ7|DDL_ACIBS RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|169153561|emb|CAP02733.1| D-alanine-D-alanine ligase B [Acinetobacter baumannii]
          Length = 308

 Score =  167 bits (423), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 107/300 (35%), Positives = 164/300 (54%), Gaps = 14/300 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-VDRSVGLVLAHLKPDLAFNVLH 59
           +AVL+GG S+ER VSL SG+A   AL  +G +    D  DRSV  ++ +   D AF VLH
Sbjct: 10  VAVLLGGKSAERAVSLDSGQAVLDALLRSGVQAEAFDPQDRSVTELVNY---DRAFIVLH 66

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G  GEDG +Q +LE L IPYT +G+  SA+ MDK+++KQ+     +P  P  ++ + T D
Sbjct: 67  GRGGEDGQIQGVLEWLNIPYTGTGVQGSAIGMDKVKTKQIWQGSDLPTAPYRIITKET-D 125

Query: 120 SQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
              +I+    P +IKP+  GSS+G+  ++K +     + +++   H   ++ E+++ G E
Sbjct: 126 LDSVIAELGLPVIIKPVHEGSSVGMSKVEKAEDFAAAIEKAT--QHDAVVMAEKWITGRE 183

Query: 177 LTCGVMGDASLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
            T   +    L V  +  P    FY YE KY   +  + +P  +     K++Q L   A 
Sbjct: 184 FTISFLNGQPLPVIRLQPPADVAFYDYEAKYQRNDVEYGIPCGLSETEEKKLQALCLRAF 243

Query: 236 QAIGCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           QA+G  G  R D + D   +  FW LE+N  PGMT  S+ P+     GYSF EL + ++E
Sbjct: 244 QAVGAEGWGRIDAMQD--EQGNFWLLEVNTVPGMTSHSLVPKATKAVGYSFDELCVAILE 301


>gi|283850409|ref|ZP_06367698.1| D-alanine/D-alanine ligase [Desulfovibrio sp. FW1012B]
 gi|283574435|gb|EFC22406.1| D-alanine/D-alanine ligase [Desulfovibrio sp. FW1012B]
          Length = 304

 Score =  167 bits (423), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 109/302 (36%), Positives = 157/302 (51%), Gaps = 16/302 (5%)

Query: 1   MAVLM--GGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSV-GLVLAHLKPDLAFNV 57
           M VL+  GG SSEREVSLS       AL   G KV   D+     G V A    D AF  
Sbjct: 1   MKVLLVAGGWSSEREVSLSGAAQIEKALLALGHKVVPFDLSHDFPGFVAAAQACDFAFLN 60

Query: 58  LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV-----CPSIL 112
           LHG  GEDGL QA+L+   +PY  SG   S L+++K  SKQ+    G+        P+  
Sbjct: 61  LHGAPGEDGLPQALLDTAGVPYQGSGPAGSFLALNKAASKQLFRQAGLATPRSAFLPTPP 120

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
            + F  D      PP+ +KP  GGSS+ + +++    +P  L  + ++  GD  L+E+ +
Sbjct: 121 GDGFVPD----FGPPWFVKPTSGGSSVSMTLVRDPADLPEAL--ARAFASGDTALVEEGL 174

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G ELTC V+GD +L    I     +F+ Y  KY    +  + PA +P  +  E+ R++ 
Sbjct: 175 AGPELTCAVLGDEALPPILIRPKAGEFFDYASKYELDAAEEICPAPVPDTLVAELGRISL 234

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
            AH+A+G  G SR+DF+          LE+N  PGMT  S+ P+ A  AG SF +L+  +
Sbjct: 235 AAHKALGLSGYSRADFIHT--ESGPMLLEVNTLPGMTRTSLLPKSAQAAGLSFPDLIARL 292

Query: 293 VE 294
           +E
Sbjct: 293 ME 294


>gi|49083732|gb|AAT51128.1| PA4410 [synthetic construct]
          Length = 320

 Score =  167 bits (423), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 109/304 (35%), Positives = 164/304 (53%), Gaps = 10/304 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL SG     +L  AG     IDV   +   L   K D AF +LHG
Sbjct: 21  VAVLFGGKSAEREVSLKSGAMVLQSLLAAGVDAFGIDVGEDLLQRLVEEKIDRAFIILHG 80

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFT 117
             GEDG VQ +LE   IPYT SG+LASAL+MDK+R+K+V  S G+P  P   V       
Sbjct: 81  RGGEDGSVQGLLECAGIPYTGSGVLASALAMDKLRTKRVWLSLGLPT-PDYAVLASEDDC 139

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            ++   +  P ++KP   GSS+G+  +     +     +++ ++   Q+L+EQ++ G E 
Sbjct: 140 REAAQRLGFPLIVKPAHEGSSIGMAKVGGLDELIAAWREAARYDS--QVLVEQWISGPEF 197

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           T   +    L    +  P + FY Y+ KY + ++ + +P  +     +E++ L   A  A
Sbjct: 198 TVATLRGQVLPAIRLGTPHT-FYDYDAKYLASDTRYQVPCGLDEAKERELKELTARACDA 256

Query: 238 IGCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +G +G  R+D + D   R  FW LE+N  PGMT  S+ P  A  AG  F++L+L ++ D+
Sbjct: 257 LGIQGWGRADVMQDAEGR--FWLLEVNTAPGMTDHSLVPMAARAAGLDFQQLVLAILADS 314

Query: 297 SCLR 300
              R
Sbjct: 315 REAR 318


>gi|170700185|ref|ZP_02891203.1| D-alanine--D-alanine ligase [Burkholderia ambifaria IOP40-10]
 gi|170134917|gb|EDT03227.1| D-alanine--D-alanine ligase [Burkholderia ambifaria IOP40-10]
          Length = 313

 Score =  167 bits (423), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 105/301 (34%), Positives = 165/301 (54%), Gaps = 19/301 (6%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-VDRSVGLVLAHLKPD---LAFN 56
           +AVL GG S+EREVSL+SG+     L DAG      D  +R     L+ LK +    AFN
Sbjct: 12  VAVLFGGESAEREVSLTSGRLVLQGLRDAGIDAHPFDPAERP----LSALKDEGFVRAFN 67

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR- 115
            LHG +GE+G +Q  L+   I YT SG+L SAL +DK R+K V    GVP  P   V R 
Sbjct: 68  ALHGGYGENGQIQGALDFYGIRYTGSGVLGSALGLDKFRTKLVWQQTGVPTPPFETVMRG 127

Query: 116 --FTMDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
             +   +  +++    P  +KP   GSS+ ++ +K   ++P  L  S +  H   +++E+
Sbjct: 128 DDYAARATDIVAKLGLPLFVKPASEGSSVAVLKVKTADALPAAL--SEAATHDKIVIVEK 185

Query: 171 YVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
            ++ G E T  + GD  L + +I VP  +FY Y  KY + ++ +++P  +P +   E++R
Sbjct: 186 SIEGGGEYTACIAGDLDLPLIKI-VPAGEFYDYHAKYVADDTQYLIPCGLPAEQETELKR 244

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           +A  A   +GC    R+DF+ D  +   ++LE+N  PGMT  S+ P+ A   G  + EL+
Sbjct: 245 IARRAFDVLGCTDWGRADFMLD-AAGNAYFLEVNTAPGMTDHSLPPKAARSIGIGYSELV 303

Query: 290 L 290
           +
Sbjct: 304 V 304


>gi|255020016|ref|ZP_05292089.1| D-alanine--D-alanine ligase B [Acidithiobacillus caldus ATCC 51756]
 gi|254970545|gb|EET28034.1| D-alanine--D-alanine ligase B [Acidithiobacillus caldus ATCC 51756]
          Length = 298

 Score =  167 bits (423), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 104/295 (35%), Positives = 160/295 (54%), Gaps = 16/295 (5%)

Query: 14  VSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAIL 72
           +SL+S  A   ALE AG +V  ID++ + +   LA    +  FNV HG FGEDG++QA L
Sbjct: 1   MSLASAAAVRRALEAAGVRVVAIDIEPQRIQEQLAQSGAEFVFNVCHGQFGEDGVLQACL 60

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR-----------FTMDSQ 121
           E   +PYT SG+LASAL+MDK RSK++  + G+P      + R            + D  
Sbjct: 61  EASGLPYTGSGVLASALAMDKWRSKRLWQAAGLPTTRGQWLQREHVTGGSPCGQSSADEL 120

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
           H+   P  +KP + GSSLGI  ++    +   + ++ + +   ++L+E+ VDG+E T G+
Sbjct: 121 HIARWPVFVKPNRAGSSLGISRVENAAGLAEAMAKAFAVD--SEILVEEAVDGLEATVGI 178

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241
           +   +L    I  P   FY YE KY + ++ ++LP+ +P    + +Q LA  A + +G R
Sbjct: 179 VAGRTLPPIVIR-PHRAFYDYEAKYLADDTEYLLPSGLPTATERRLQELALQAFRELGGR 237

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              R DFL D     +  LE+N  PGMT  S+ P  A   G++  +L L +V  A
Sbjct: 238 DWGRVDFLVDAEG-GIHLLELNAVPGMTDHSLVPMAARALGWTMTKLCLEIVSTA 291


>gi|290969173|ref|ZP_06560698.1| D-ala D-ala ligase N-terminal domain protein [Megasphaera genomosp.
           type_1 str. 28L]
 gi|290780679|gb|EFD93282.1| D-ala D-ala ligase N-terminal domain protein [Megasphaera genomosp.
           type_1 str. 28L]
          Length = 313

 Score =  167 bits (423), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 102/305 (33%), Positives = 165/305 (54%), Gaps = 15/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-VDRSVGLVLAHLKPDLAFNVLH 59
           +AV++GG S+E  +S  +G A A+AL++ G+K   ++ V   +   L   K D+ FN LH
Sbjct: 10  IAVMVGGPSTEAAISRKTGAAVAAALQEKGYKPEIMELVPTMLARTLQEKKIDVVFNALH 69

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G +GEDG++Q   E+  IPYT  G++ASA+ M+K+ SK   +  G+P  P      F   
Sbjct: 70  GRYGEDGVLQGFCEMAGIPYTGPGVMASAVGMNKVMSKCAFAGAGIPTAP--FAYYFAAQ 127

Query: 120 SQHLI--------SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
           S   I        S P VIK    GSS+G +++++  ++P  + ++ S++  + ++ EQ+
Sbjct: 128 SPAAIVAAIEREFSLPVVIKSAGQGSSIGTVIVREADALPEAVKEAFSYS--NSIIAEQF 185

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           +DG E T  VM D +  V +I V  +  Y Y  KY+   + H+ PA +     +++Q LA
Sbjct: 186 IDGDEFTVAVMDDMAFPVIQI-VSDTGKYDYYSKYTPGVAKHLCPAPLTETATRQMQDLA 244

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
                     G++R D + D   R  F LEIN  PGMT  S+ P+ A   G SF +L   
Sbjct: 245 LQVFHLCHASGVARVDMMTDAAGRP-FVLEINTVPGMTETSLVPDAARAMGMSFADLCEK 303

Query: 292 MVEDA 296
           ++++A
Sbjct: 304 ILQEA 308


>gi|256821916|ref|YP_003145879.1| D-alanine/D-alanine ligase [Kangiella koreensis DSM 16069]
 gi|256795455|gb|ACV26111.1| D-alanine/D-alanine ligase [Kangiella koreensis DSM 16069]
          Length = 312

 Score =  167 bits (422), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 97/298 (32%), Positives = 166/298 (55%), Gaps = 9/298 (3%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62
           VL GG S+E+E+SL SGKA  +AL + G     ID +      +     D  +N LHG  
Sbjct: 11  VLYGGNSAEKEISLRSGKAVYNALLNVGIDAVLIDPEAEGLAAIQASNCDRVWNALHGRG 70

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
           GEDG++QA L+LL +PYT SG++ASA++MDK+R+K +  +   PV    ++N   +  + 
Sbjct: 71  GEDGVIQAHLQLLGLPYTGSGVMASAIAMDKLRTKLIWQAMSYPVAKHRMLNTGVLTIEQ 130

Query: 123 L------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
                  ++   ++KP++ GSS+G+   K D +  L     ++  +  ++++EQ++DG E
Sbjct: 131 AEDVLADMNDCVMVKPIREGSSVGM--AKADNAKALVEAVENAKQYDREVMLEQWIDGEE 188

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
            T  ++   +L    +  P + FY ++ KY S ++ +V P+ +  +   E+  L+  A  
Sbjct: 189 YTVSILNGKALPSIRVKTPNT-FYDFQAKYQSQSTEYVCPSGLNDEDEAELAELSQAAFY 247

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           A+GC G  R D + +  +     LE+N  PGMT  S+ P+ A  +G SF EL++ ++E
Sbjct: 248 ALGCEGWGRVDLMRERSTGNWLLLEVNTVPGMTETSLVPKAAKQSGMSFDELVVAVLE 305


>gi|315253166|gb|EFU33134.1| D-ala D-ala ligase [Escherichia coli MS 85-1]
          Length = 291

 Score =  167 bits (422), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 104/291 (35%), Positives = 155/291 (53%), Gaps = 13/291 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SG A  + L + G     +D        L  +     F  LHG
Sbjct: 5   IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118
             GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK +    G+PV P + + R     
Sbjct: 65  RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124

Query: 119 ---DSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
              D Q      +  P ++KP + GSS+G+  +  + ++  D L+  ++ H +++LIE++
Sbjct: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQ-DALR-LAFQHDEEVLIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L    I  P   FY YE KY S  + +  PA +       +Q L 
Sbjct: 183 LSGPEFTVAILGEEILPSIRIQ-PSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAG 282
             A   +GC+G  R D + D    + + LE N  PGMT  S+ P  A  AG
Sbjct: 242 LKAWTTLGCKGWGRIDVMLDS-DGQFYLLEANTSPGMTSHSLVPMAARQAG 291


>gi|307824834|ref|ZP_07655057.1| D-alanine/D-alanine ligase [Methylobacter tundripaludum SV96]
 gi|307734192|gb|EFO05046.1| D-alanine/D-alanine ligase [Methylobacter tundripaludum SV96]
          Length = 310

 Score =  167 bits (422), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 108/301 (35%), Positives = 162/301 (53%), Gaps = 9/301 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AV+MGG ++EREVSL SG A   AL+  G     IDV  S    LA  K D  FN++HG
Sbjct: 15  VAVMMGGSAAEREVSLRSGAAVYEALKRKGVDAIAIDVTGSPIEALAGQKFDRVFNIIHG 74

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTM 118
             GEDG++Q +LE+L+IPYT SG++ASAL+MDK+R+K      G+ V P   +L++   +
Sbjct: 75  RGGEDGVLQGVLEVLDIPYTGSGVMASALTMDKLRTKLCWQGYGL-VTPKWCLLIDESDL 133

Query: 119 DSQ-HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
           D     +  P ++KP + GSS+G+        +   L  ++ +     +  E +V G E 
Sbjct: 134 DGCIEKLGFPVIVKPAQEGSSIGMSKASNRDELLAALSVAAKYRC--DVYAEAWVTGKEY 191

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           T  V+   +L V  +  P + FY YE KY +  + +  P  +  D    ++ LA  A + 
Sbjct: 192 TVAVLDGEALPVIRLETPNT-FYDYEAKYQATTTQYHCPCGLSQDQELFIRDLAVTACKV 250

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           +G +G  R D   D L +    +E+N  PGMT  S+ P  A  AG  F E L+W + + S
Sbjct: 251 VGVKGWGRVDVFIDDLGQYQL-IEVNTVPGMTDHSLVPMAARQAGMDFEE-LVWRILETS 308

Query: 298 C 298
           C
Sbjct: 309 C 309


>gi|168216305|ref|ZP_02641930.1| D-alanine--D-alanine ligase [Clostridium perfringens NCTC 8239]
 gi|182381721|gb|EDT79200.1| D-alanine--D-alanine ligase [Clostridium perfringens NCTC 8239]
          Length = 302

 Score =  167 bits (422), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 97/297 (32%), Positives = 167/297 (56%), Gaps = 8/297 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + ++MGGISSEREVSL+SG++  + ++   ++VS+I ++    ++      D A   LHG
Sbjct: 3   VGIIMGGISSEREVSLASGESIFNHIDKEKYEVSKIIINNKRDILEKVTGLDFALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF-TMD 119
            FGEDG VQA L++++IPY+  G L+S+L MDK  SK+V+ +  +     I V     +D
Sbjct: 63  KFGEDGTVQAFLDIIDIPYSGCGALSSSLCMDKNLSKKVLKAENIRTAKWITVKSIEEID 122

Query: 120 SQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            + +  I  P  +KP  GGSS+    + K + I   +++   ++  ++++IE +V G E+
Sbjct: 123 YEKIEEIGYPVFVKPNNGGSSVATFKVYKKEDIKDAVMEGLKYD--EEVIIESFVKGREI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC +       + EI   K+DFY Y+ KY++  + H LP ++   +Y EV+ +A    + 
Sbjct: 181 TCPIFNGELFPILEIK-SKADFYDYKQKYAANGAEH-LPVQLEKSLYDEVKEMALKTFEV 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           + C   +R D +        + LE+N  PGMT  S+FP+ A   G S+ + +  ++E
Sbjct: 239 LKCEVYARVDMIISEEGVP-YILEVNTLPGMTATSLFPQSAESIGISYSKFIDLIIE 294


>gi|77361417|ref|YP_340992.1| D-alanine-D-alanine ligase B, affects cell division
           [Pseudoalteromonas haloplanktis TAC125]
 gi|123587864|sp|Q3IFY2|DDL_PSEHT RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|76876328|emb|CAI87550.1| D-alanine-D-alanine ligase B, affects cell division
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 306

 Score =  167 bits (422), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 105/297 (35%), Positives = 157/297 (52%), Gaps = 7/297 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL SG+A  +AL++ G      D        L  L  D  F  LHG
Sbjct: 11  VAVLLGGNSAEREVSLRSGQAVLNALQNHGINAIAFDPKERPLWELNELAIDRVFIALHG 70

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN-RFTMD 119
             GEDG VQ  LE + +PYT S +L SAL+MDK+R K +  S G+   P  +V+ +   D
Sbjct: 71  RGGEDGTVQGALEFMNLPYTGSNVLGSALAMDKVRCKHLFKSAGLSTAPYTVVDAKKGFD 130

Query: 120 SQHLIS--PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
           +  ++      ++KP   GSS+G+      Q +   L  S+++    Q+L+EQ++ G E 
Sbjct: 131 AAAIMQQFKKVMVKPSHEGSSIGMAQASTPQELEDAL--SNAFKFDSQVLVEQWISGREF 188

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           T  V+GD  L V E+  P   FY Y+ KY +  + +  PA +     + +Q +A  A   
Sbjct: 189 TITVLGDEVLPVIEMTTPNG-FYDYQAKYQATTTQYHCPADLSPADTEHLQAMALDAFDL 247

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           +G  G  R D + D      + LE+N  PGMT  S+ P  A   G SF +L++ ++E
Sbjct: 248 VGASGWGRVDAMQDQ-QGNFYLLEVNTVPGMTEKSLVPMAAKAHGASFEQLVVRILE 303


>gi|224826080|ref|ZP_03699183.1| D-alanine/D-alanine ligase [Lutiella nitroferrum 2002]
 gi|224601717|gb|EEG07897.1| D-alanine/D-alanine ligase [Lutiella nitroferrum 2002]
          Length = 303

 Score =  166 bits (421), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 103/301 (34%), Positives = 161/301 (53%), Gaps = 12/301 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AV+MGG S+EREVSL SG     AL+  G      D        L     +  F  LHG
Sbjct: 7   VAVMMGGTSAEREVSLMSGGGVLKALQSQGVDAHAFDPAEKPLAALKDEGFERVFIALHG 66

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV----NRF 116
            FGEDG +Q  LE + +PYT  G++ASA+ MDK R+K +    G+P+   +L+    N  
Sbjct: 67  PFGEDGTLQGALETMGMPYTGCGVMASAIGMDKWRTKLLWQGAGLPIPAFVLLADDSNFA 126

Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI-EQYVDGI 175
            +++Q  +  P  +KP   GSS+G+  +K    +     ++  +   D+L+I E +V G 
Sbjct: 127 AVEAQ--LGLPLFVKPATEGSSIGVTKVKHPGELRAAYEEARRY---DKLVIAEAFVGGG 181

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
           E TC ++GD +L   +I  P ++FY Y+ KY   ++ +  P+ +  ++    + LA  A 
Sbjct: 182 EYTCAIIGDKALPTIKIE-PATEFYDYQAKYFRDDTVYRCPSGLSAEVELRARELALTAF 240

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           + +G RG  R DFL D  +  ++ LE+N  PGMT  S+ P  A   G S+ EL L +++ 
Sbjct: 241 KVLGGRGWGRVDFLMDE-AGGIYLLEVNTSPGMTSHSLVPMAARVEGLSYEELCLAILDM 299

Query: 296 A 296
           A
Sbjct: 300 A 300


>gi|94501894|ref|ZP_01308404.1| D-alanylalanine synthetase [Oceanobacter sp. RED65]
 gi|94425947|gb|EAT10945.1| D-alanylalanine synthetase [Oceanobacter sp. RED65]
          Length = 301

 Score =  166 bits (421), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 106/297 (35%), Positives = 161/297 (54%), Gaps = 8/297 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AV++GG S+EREVSL SG+A   AL        +ID  R++   LA  K D AF  LHG
Sbjct: 7   VAVILGGNSAEREVSLRSGEAIYQALIAQDIDAVKIDSARNLIGQLAEQKVDRAFIALHG 66

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--M 118
             GEDG +Q +LE   IPYT SG+ ASA+ MDK RSK +     +P     LV   +   
Sbjct: 67  VGGEDGTIQGLLEFYGIPYTGSGVKASAICMDKWRSKLIWQGLSLPTPKFTLVESLSDLK 126

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           +  + +  P ++KP   GSS+GI  +  +  +    + +     G  +L EQ+V+G+E T
Sbjct: 127 EFANQVGYPLMVKPSLEGSSIGISKVASEAQLERAFVDAK--QTGSSVLAEQFVEGLEFT 184

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
            G++   +L   ++    +DFY Y  KY   ++ +++P  +  +    +Q LA  A+Q++
Sbjct: 185 VGILDGKALPAIQLKAA-NDFYDYNAKYLQNDTQYIVPCGLESEKEACLQSLALQAYQSL 243

Query: 239 GCRGISRSDFLFDPLSRKVFWL-EINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            C G  R D + D  ++  FWL E+N  PGMT  S+ P  A   G SF  L+L ++E
Sbjct: 244 DCHGWGRVDVMQD--AKGDFWLIEVNTIPGMTDHSLVPMAAKARGMSFEALVLNILE 298


>gi|134294649|ref|YP_001118384.1| D-alanine--D-alanine ligase [Burkholderia vietnamiensis G4]
 gi|190359124|sp|A4JB96|DDL_BURVG RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|134137806|gb|ABO53549.1| D-alanine--D-alanine ligase [Burkholderia vietnamiensis G4]
          Length = 313

 Score =  166 bits (421), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 106/301 (35%), Positives = 165/301 (54%), Gaps = 19/301 (6%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-VDRSVGLVLAHLKPD---LAFN 56
           +AVL GG S+EREVSL+SG+     L DAG      D  +R     L+ LK +    AFN
Sbjct: 12  VAVLFGGESAEREVSLTSGRLVLQGLRDAGIDAHLFDPAERP----LSALKDEGFVRAFN 67

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR- 115
            LHG +GE+G +Q  L+   I YT SG+L SAL +DK R+K V    GVP  P   V R 
Sbjct: 68  ALHGGYGENGQIQGALDFYGIRYTGSGVLGSALGLDKFRTKLVWQQTGVPTPPFETVLRG 127

Query: 116 --FTMDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
             +   +  +++    P  +KP   GSS+ ++ +K   ++P  L  S +  H   +++E+
Sbjct: 128 DDYAARATEIVAKLGLPLFVKPASEGSSVAVLKVKTADALPAAL--SEAATHDKIVIVEK 185

Query: 171 YVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
            ++ G E T  + GD  L + +I VP  +FY Y  KY + ++ +++P  +P     E++R
Sbjct: 186 SIEGGGEYTACIAGDLDLPLIKI-VPAGEFYDYHAKYVADDTQYLIPCGLPAAQEAELKR 244

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           +A  A   +GC    R+DF+ D  +   ++LE+N  PGMT  S+ P+ A   G S+ EL+
Sbjct: 245 IARRAFDVLGCTDWGRADFMLDA-AGNAYFLEVNTAPGMTDHSLPPKAARSIGISYSELV 303

Query: 290 L 290
           +
Sbjct: 304 V 304


>gi|327479645|gb|AEA82955.1| D-alanine--D-alanine ligase [Pseudomonas stutzeri DSM 4166]
          Length = 314

 Score =  166 bits (421), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 114/300 (38%), Positives = 172/300 (57%), Gaps = 10/300 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL SG A  +AL+ AG     ID    +   L+  + D AF VLHG
Sbjct: 16  VAVLFGGRSAEREVSLKSGAAVLAALQAAGVDAFGIDAGDDLLQRLSSERIDRAFIVLHG 75

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LE   IPYT SGILASAL+MDK+R+KQV  S G+P  P   V    +D 
Sbjct: 76  RGGEDGSMQGLLECAGIPYTGSGILASALAMDKLRTKQVWQSLGLPT-PRHAVLASEVDC 134

Query: 121 Q---HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
           Q    ++  P ++KP   GSS+G+  +     +      +S+++   Q+L+EQ++ G E 
Sbjct: 135 QAAAQMLGFPLIVKPAHEGSSIGMAKVGDVAELIAAWRAASAYDA--QVLVEQWIHGPEF 192

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           T  V+    L    +  P + FY Y+ KY + ++ + +P  +     +E++ L+  A +A
Sbjct: 193 TVAVLHGEVLPPIGLGTPHT-FYDYDAKYLASDTQYRIPCGLDAAREEELKVLSARACEA 251

Query: 238 IGCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +G RG +R D + D  +   FW LE+N  PGMT  S+ P  A  AG  F++L+L +++D+
Sbjct: 252 VGIRGWARVDVMQD--AEGNFWLLEVNTVPGMTDHSLVPMAARAAGLDFQQLVLSILDDS 309


>gi|262280494|ref|ZP_06058278.1| D-alanine-D-alanine ligase B [Acinetobacter calcoaceticus RUH2202]
 gi|262258272|gb|EEY77006.1| D-alanine-D-alanine ligase B [Acinetobacter calcoaceticus RUH2202]
          Length = 308

 Score =  166 bits (421), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 107/300 (35%), Positives = 163/300 (54%), Gaps = 14/300 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-VDRSVGLVLAHLKPDLAFNVLH 59
           +AVL GG S+ER VSL SG+A   AL  +G +    D  DRSV  ++ +   D AF VLH
Sbjct: 10  VAVLFGGKSAERAVSLDSGQAVLDALLRSGVQAEAFDPQDRSVTELVNY---DRAFIVLH 66

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G  GEDG +Q +LE L +PYT +G+  SA+ MDK+++KQ+     +P  P  ++ + T D
Sbjct: 67  GRGGEDGQIQGVLEWLNLPYTGTGVQGSAIGMDKVKTKQIWQGSDLPTAPYRIITKET-D 125

Query: 120 SQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
              +I+    P +IKP+  GSS+G+  ++K +     + +++   H   ++ E+++ G E
Sbjct: 126 LDAVIAELGLPVIIKPVHEGSSVGMSKVEKAEDFAAAIEKAT--QHDAVVMAEKWITGRE 183

Query: 177 LTCGVMGDASLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
            T   +    L V  +  P    FY YE KY   +  + +P  +     K +Q L   A 
Sbjct: 184 FTISFLNGQPLPVIRLQPPADVAFYDYEAKYERNDVEYGIPCGLSETEEKNLQALCLRAF 243

Query: 236 QAIGCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           QA+G  G  R D + D   +  FW LE+N  PGMT  S+ P+ A   GYSF EL + ++E
Sbjct: 244 QAVGAEGWGRIDAMQD--EQGNFWLLEVNTVPGMTSHSLVPKAAQAVGYSFDELCVAILE 301


>gi|110833461|ref|YP_692320.1| D-alanine--D-alanine ligase [Alcanivorax borkumensis SK2]
 gi|123345751|sp|Q0VS00|DDL_ALCBS RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|110646572|emb|CAL16048.1| D-alanine-D-alanine ligase B [Alcanivorax borkumensis SK2]
          Length = 307

 Score =  166 bits (421), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 106/299 (35%), Positives = 160/299 (53%), Gaps = 16/299 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-VDRSVGLVLAHLKPDLAFNVLH 59
           +AVL GG S+ER VSL SG A  + L + G     +D  D+SV  +      D AF  LH
Sbjct: 16  VAVLAGGRSAERAVSLKSGAAVHAGLRNLGLLAELVDPADKSVDTLRGF---DAAFIALH 72

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G  GEDG++Q +LE LEIPYT SG++ASA+ MDK+R+KQ+    G+P     +  R    
Sbjct: 73  GRGGEDGVIQGVLEHLEIPYTGSGVMASAIGMDKVRTKQLWKGAGLPTPAFYVAGR---- 128

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
            +  +  P ++KP   GSS+G+      + +   L+ +  ++    +L+E +V+G E T 
Sbjct: 129 EEAELGFPVIVKPAHEGSSIGMAKADNTEELGEALVAAEKFDQ--DVLVEAWVNGPEYTV 186

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
            V+GD +L    +  P   FY +E KY S ++ ++ PA +     + ++ LA  A +  G
Sbjct: 187 AVLGDEALPAIRLQTPHV-FYDFEAKYQSDSTEYLCPAGLDDADEQALRTLALTAFRVAG 245

Query: 240 CRGISRSDFLFDPLSRKVFW--LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           CRG  R D + D   +   W  LE+N  PGMT  S+ P  A   G  F  L+  ++ DA
Sbjct: 246 CRGWGRVDVMRDEQGQ---WQLLEVNTVPGMTDHSLVPMAAKATGRDFDVLVGEILLDA 301


>gi|311693457|gb|ADP96330.1| D-alanine-D-alanine ligase [marine bacterium HP15]
          Length = 323

 Score =  166 bits (421), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 111/302 (36%), Positives = 162/302 (53%), Gaps = 12/302 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AV MGG S+EREVSL SGKA  +AL  AG     +DV   +   + +   D  F  LHG
Sbjct: 22  VAVFMGGDSAEREVSLKSGKAVLAALVSAGVDAFAVDVRGCLLRTVDNPDFDRVFIALHG 81

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +QAIL    IPYT S +LASAL+MDK+R+K V   CG+P  P          +
Sbjct: 82  RGGEDGTLQAILSQAGIPYTGSDVLASALAMDKLRTKYVFEGCGLPT-PKFRTMSGADQA 140

Query: 121 QHLIS---PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQL-LIEQYVDGIE 176
           + +I     P  +KP + GSS+G   I+K  +         +    D L L+E++++G E
Sbjct: 141 EQIIDELRAPLSVKPSREGSSIG---IRKVHTAAELAHAYEAAAALDNLVLVEEWIEGPE 197

Query: 177 LTCGVMGDASLDVTEIAVPKSD-FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
            T  ++ D +L    ++      FY YE KY + ++ + +P  +  +    +Q LA  A 
Sbjct: 198 FTVSLLQDRALPAIGLSASTEHVFYDYEAKYLADDTRYRIPCGLAPEDEVRLQHLALEAF 257

Query: 236 QAIGCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           + +GCR   R D + D  S   FW LE+N  PGMT  S+ P  A  AG SF EL++ +++
Sbjct: 258 RVVGCRTWGRVDIMQD--SDGKFWLLEVNTVPGMTDHSLVPMAAKAAGISFEELVVRILK 315

Query: 295 DA 296
           D+
Sbjct: 316 DS 317


>gi|293610570|ref|ZP_06692870.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292826914|gb|EFF85279.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 308

 Score =  166 bits (421), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 107/300 (35%), Positives = 163/300 (54%), Gaps = 14/300 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-VDRSVGLVLAHLKPDLAFNVLH 59
           +AVL GG S+ER VSL SG+A   AL  +G +    D  DRSV  ++ +   D AF VLH
Sbjct: 10  VAVLFGGKSAERAVSLDSGQAVLDALLRSGVQAEAFDPQDRSVTELVNY---DRAFIVLH 66

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G  GEDG +Q +LE L +PYT +G+  SA+ MDK+++KQ+     +P  P  ++ + T D
Sbjct: 67  GRGGEDGQIQGVLEWLNLPYTGTGVQGSAIGMDKVKTKQIWQGSDLPTAPYRIITKET-D 125

Query: 120 SQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
              +I+    P +IKP+  GSS+G+  ++K +     + +++   H   ++ E+++ G E
Sbjct: 126 LDAVIADLGLPVIIKPVHEGSSVGMSKVEKAEDFAAAIEKAT--QHDAVVMAEKWITGRE 183

Query: 177 LTCGVMGDASLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
            T   +    L V  +  P    FY YE KY   +  + +P  +     K +Q L   A 
Sbjct: 184 FTISFLNGQPLPVIRLQPPADVAFYDYEAKYQRNDVEYGIPCGLSETEEKNLQALCLRAF 243

Query: 236 QAIGCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           QA+G  G  R D + D   +  FW LE+N  PGMT  S+ P+ A   GYSF EL + ++E
Sbjct: 244 QAVGAEGWGRIDAMQD--EQGNFWLLEVNTVPGMTSHSLVPKAAKAVGYSFDELCVAILE 301


>gi|182419791|ref|ZP_02951031.1| D-alanine--D-alanine ligase B [Clostridium butyricum 5521]
 gi|237666531|ref|ZP_04526516.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB)
           (D-Ala-D-Ala ligase B) [Clostridium butyricum E4 str.
           BoNT E BL5262]
 gi|182376339|gb|EDT73921.1| D-alanine--D-alanine ligase B [Clostridium butyricum 5521]
 gi|237657730|gb|EEP55285.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB)
           (D-Ala-D-Ala ligase B) [Clostridium butyricum E4 str.
           BoNT E BL5262]
          Length = 301

 Score =  166 bits (420), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 100/299 (33%), Positives = 171/299 (57%), Gaps = 8/299 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGGISSERE+SL+SGK+    +    ++V  I +D+   +V      D A   LHG
Sbjct: 3   IGVIMGGISSEREISLNSGKSIVENINKDKYEVEAIVIDKKEDIVTKVKGIDFALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFT 117
            FGEDG VQA+L+ L IPY+  G L+SA+ MDK  +K ++ +  +   P I +   ++  
Sbjct: 63  QFGEDGTVQAVLQTLGIPYSGCGPLSSAMCMDKDVTKSILQAAKIRTAPWINLSKNDKID 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            D+   +  P V+KP  GGSS+   ++K+++ I   + +   W+   +++IE+++ G E+
Sbjct: 123 YDAIKKLGYPVVVKPTHGGSSVATFIVKEEKEIEECVKEGFKWDS--EVMIEKFIKGDEI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC V GD  L V  I  PK++F+ +  KY    +  V+  ++  ++++EV+++A   ++A
Sbjct: 181 TCPVYGDRMLPVIAIK-PKAEFFDFASKYQDGGAEEVV-VELDKNLHEEVEKMALATYKA 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           + C   SR D +        + LE+N  PGMT  S+ P+ AA     F +L+  ++ED+
Sbjct: 239 LKCEVYSRVDMIV-TTDGVPYILEVNTLPGMTKNSLIPKSAAAVNIDFAQLVDMIIEDS 296


>gi|71909108|ref|YP_286695.1| D-alanine--D-alanine ligase [Dechloromonas aromatica RCB]
 gi|123626568|sp|Q47AA6|DDL_DECAR RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|71848729|gb|AAZ48225.1| D-alanine--D-alanine ligase [Dechloromonas aromatica RCB]
          Length = 301

 Score =  166 bits (420), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 105/300 (35%), Positives = 166/300 (55%), Gaps = 10/300 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP-DLAFNVLH 59
           +AVL GG S+EREVSL+SG    +AL+  G      D        L  LK  D AF  LH
Sbjct: 7   VAVLFGGTSAEREVSLNSGSRVLAALQGQGIDAHAFDPAEQP---LDALKGYDRAFIALH 63

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCG--VPVCPSILVNRFT 117
           G  GEDG +Q  LE++ IPYT SG+LASAL+MDK R+K +  + G  +P    +  +   
Sbjct: 64  GRHGEDGTIQGALEVMHIPYTGSGVLASALAMDKFRTKLMWRAAGLAIPEYALLTADSDF 123

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            D +  +  P  +KP + GSS+G+  +K+  ++     +++   H   ++ E+ V G E 
Sbjct: 124 ADIEEELGLPLFVKPAREGSSIGVTKVKERGALKAAYEEAA--RHDPLVIAEKGVMGGEY 181

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           T G++GD ++ + +I  P +++Y YE KY+  ++ ++ P  +P     E+++ A  A + 
Sbjct: 182 TVGIIGDEAMPIIKIE-PATEWYDYEAKYNRDDTRYLCPCGLPEAKEMEIRKGALEAFRI 240

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           +G RG  R DFL D    K ++LE+N  PGMT  S+ P  A   G  +  L+  ++E A+
Sbjct: 241 LGGRGWGRVDFLMDE-DGKYYFLEVNTAPGMTDHSLVPMAARVNGMDYPTLVRRVLELAA 299


>gi|163784016|ref|ZP_02178976.1| D-alanine--D-alanine ligase [Hydrogenivirga sp. 128-5-R1-1]
 gi|159880714|gb|EDP74258.1| D-alanine--D-alanine ligase [Hydrogenivirga sp. 128-5-R1-1]
          Length = 295

 Score =  166 bits (420), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 102/298 (34%), Positives = 164/298 (55%), Gaps = 15/298 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--LAHLKPDLAFNVL 58
           +A+L GG S ERE+S+ SGKA  +AL+  G+     D  +    +  + +  PDLAF  L
Sbjct: 8   IALLYGGNSKEREISIKSGKAVENALKLLGYNYKVFDPVKGFEFIEEIKNYNPDLAFISL 67

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
           HG  GEDG +Q++LE L I YT S    SA+ MDK+ +K+++SS  +PV  +     F+ 
Sbjct: 68  HGKGGEDGEIQSLLEFLGIKYTGSNPKTSAVCMDKVLTKKILSSENIPVPQT-----FSK 122

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           D+   I  P V+KP + GSS+G+ +    + +   L     + +   ++IEQ++ G E+T
Sbjct: 123 DN---IKFPVVVKPSEEGSSIGVYIANNKEDLNDALKHLKDYKN---IIIEQFIKGREIT 176

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             ++    L + EI V    FY Y+ KY S  + ++ PA+I   + +++ ++A    +  
Sbjct: 177 VSILNGKILPIVEIVVDDG-FYDYKNKYISSKTNYICPAEIDEKLQEKINKIAKKCWEVF 235

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            C+G  R D + D  +   + LEIN  PGMT  S+ P+ A   G SF EL+  ++E A
Sbjct: 236 NCKGAVRIDMIIDK-NNTPYVLEINTIPGMTEHSLLPKAAKAIGLSFEELVNEIIEGA 292


>gi|169794350|ref|YP_001712143.1| D-alanine--D-alanine ligase [Acinetobacter baumannii AYE]
 gi|213159075|ref|YP_002321073.1| D-alanine--D-alanine ligase B [Acinetobacter baumannii AB0057]
 gi|215481906|ref|YP_002324088.1| D-alanine--D-alanine ligase B [Acinetobacter baumannii AB307-0294]
 gi|301344639|ref|ZP_07225380.1| D-alanine--D-alanine ligase [Acinetobacter baumannii AB056]
 gi|332850156|ref|ZP_08432543.1| D-ala D-ala ligase protein [Acinetobacter baumannii 6013150]
 gi|332868968|ref|ZP_08438527.1| D-ala D-ala ligase protein [Acinetobacter baumannii 6013113]
 gi|226723896|sp|B7GV75|DDL_ACIB3 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|226723897|sp|B7ICE3|DDL_ACIB5 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|229485851|sp|B0V9F7|DDL_ACIBY RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|169147277|emb|CAM85136.1| D-alanine-D-alanine ligase B [Acinetobacter baumannii AYE]
 gi|213058235|gb|ACJ43137.1| D-alanine--D-alanine ligase B [Acinetobacter baumannii AB0057]
 gi|213987599|gb|ACJ57898.1| D-alanine--D-alanine ligase B [Acinetobacter baumannii AB307-0294]
 gi|332731005|gb|EGJ62311.1| D-ala D-ala ligase protein [Acinetobacter baumannii 6013150]
 gi|332733011|gb|EGJ64213.1| D-ala D-ala ligase protein [Acinetobacter baumannii 6013113]
          Length = 308

 Score =  166 bits (420), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 106/294 (36%), Positives = 161/294 (54%), Gaps = 14/294 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-VDRSVGLVLAHLKPDLAFNVLH 59
           +AVL+GG S+ER VSL SG+A   AL  +G +    D  +RSV  ++ +   D AF VLH
Sbjct: 10  VAVLLGGKSAERAVSLDSGQAVLDALLRSGVQAEAFDPQNRSVTELVNY---DRAFIVLH 66

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G  GEDG +Q +LE L IPYT +G+  SA+ MDK+++KQ+     +P  P  ++ + T D
Sbjct: 67  GRGGEDGQIQGVLEWLNIPYTGTGVQGSAIGMDKVKTKQIWQGSDLPTAPYRIITKET-D 125

Query: 120 SQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
              +I+    P +IKP+  GSS+G+  ++K +     + +++   H   ++ E+++ G E
Sbjct: 126 LDSVIAELGLPVIIKPVHEGSSVGMSKVEKAEDFAAAIEKAT--QHDAVVMAEKWITGRE 183

Query: 177 LTCGVMGDASLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
            T   +    L V  +  P    FY YE KY   +  + +P  +     K++Q L   A 
Sbjct: 184 FTISFLNGQPLPVIRLQPPADVAFYDYEAKYQRNDVEYGIPCGLSETEEKKLQALCLRAF 243

Query: 236 QAIGCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           QA+G  G  R D + D   +  FW LE+N  PGMT  S+ P+ A   GYSF EL
Sbjct: 244 QAVGAEGWGRIDAMQD--EQGNFWLLEVNTVPGMTSHSLVPKAAKAVGYSFDEL 295


>gi|254238927|ref|ZP_04932250.1| D-alanine-D-alanine ligase [Pseudomonas aeruginosa C3719]
 gi|254244779|ref|ZP_04938101.1| D-alanine-D-alanine ligase [Pseudomonas aeruginosa 2192]
 gi|126170858|gb|EAZ56369.1| D-alanine-D-alanine ligase [Pseudomonas aeruginosa C3719]
 gi|126198157|gb|EAZ62220.1| D-alanine-D-alanine ligase [Pseudomonas aeruginosa 2192]
          Length = 319

 Score =  166 bits (420), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 108/304 (35%), Positives = 164/304 (53%), Gaps = 10/304 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL SG     +L  AG     IDV   +   L   K D AF +LHG
Sbjct: 21  VAVLFGGKSAEREVSLKSGAMVLQSLLAAGVDAFGIDVGEDLLQRLVEEKIDRAFIILHG 80

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFT 117
             GEDG +Q +LE   IPYT SG+LASAL+MDK+R+K+V  S G+P  P   V       
Sbjct: 81  RGGEDGSMQGLLECAGIPYTGSGVLASALAMDKLRTKRVWLSLGLPT-PDYAVLASEDDC 139

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            ++   +  P ++KP   GSS+G+  +     +     +++ ++   Q+L+EQ++ G E 
Sbjct: 140 REAAQRLGFPLIVKPAHEGSSIGMAKVGGLDELIAAWREAARYDS--QVLVEQWISGPEF 197

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           T   +    L    +  P + FY Y+ KY + ++ + +P  +     +E++ L   A  A
Sbjct: 198 TVATLRGQVLPAIRLGTPHT-FYDYDAKYLASDTRYQVPCGLDEAKERELKELTARACDA 256

Query: 238 IGCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +G +G  R+D + D   R  FW LE+N  PGMT  S+ P  A  AG  F++L+L ++ D+
Sbjct: 257 LGIQGWGRADVMQDAKGR--FWLLEVNTAPGMTDHSLVPMAARAAGLDFQQLVLAILADS 314

Query: 297 SCLR 300
              R
Sbjct: 315 REAR 318


>gi|120555361|ref|YP_959712.1| D-alanine--D-alanine ligase [Marinobacter aquaeolei VT8]
 gi|190359162|sp|A1U3F6|DDL_MARAV RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|120325210|gb|ABM19525.1| D-alanine--D-alanine ligase [Marinobacter aquaeolei VT8]
          Length = 325

 Score =  166 bits (420), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 107/299 (35%), Positives = 162/299 (54%), Gaps = 10/299 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AV MGG S+EREVSL SGKA  +AL+ AG      D+   +   +     D  F  LHG
Sbjct: 25  VAVFMGGDSAEREVSLKSGKAVLAALQSAGIDAVGRDIQGCLLRTVDEPDFDRVFIALHG 84

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +QAIL    IPYT S +LASAL+MDK+R+K V   CG+P  P+        ++
Sbjct: 85  RGGEDGTLQAILGQAGIPYTGSEVLASALAMDKLRTKYVFEGCGLPT-PAFRAMTSVGEA 143

Query: 121 QHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
           + +++    P  +KP   GSS+GI  +     +      ++  +  D +L+EQ+++G E 
Sbjct: 144 EGIVAALGTPLSVKPAHEGSSIGIRKVNSAAELAEAYEAAARLD--DLVLVEQWIEGPEF 201

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           T  ++ D +L    ++   + FY Y+ KY + ++ + +P  +  D    +Q LA  A + 
Sbjct: 202 TVSLLQDKALPAIGLSTDHA-FYDYDAKYLADDTRYRIPCGLAPDDELRLQHLALDAFRV 260

Query: 238 IGCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           +GCR   R D + D      FW LE+N  PGMT  S+ P  A  AG SF EL++ ++ D
Sbjct: 261 LGCRTWGRVDIMQDRAGE--FWLLEVNTVPGMTDHSLVPMAAKAAGISFEELVVRILRD 317


>gi|257454701|ref|ZP_05619957.1| D-alanine--D-alanine ligase B [Enhydrobacter aerosaccus SK60]
 gi|257448011|gb|EEV22998.1| D-alanine--D-alanine ligase B [Enhydrobacter aerosaccus SK60]
          Length = 307

 Score =  166 bits (420), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 110/298 (36%), Positives = 165/298 (55%), Gaps = 12/298 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP-DLAFNVLH 59
           +AV+ GG S+EREVSL+SG+A   AL   G      D   +    ++ L+  D  FNVLH
Sbjct: 13  VAVVCGGWSAEREVSLTSGQAVLDALLAKGVDAHHFDPKETD---ISKLRDYDRVFNVLH 69

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN---RF 116
           G FGEDG +Q +L+   IPYT  G+LASA++MDK R++ V  +  +P  P ++++    F
Sbjct: 70  GTFGEDGSLQGVLDGFNIPYTGCGVLASAIAMDKFRNRLVWQALDLPNVPYVVLDDNTDF 129

Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
           T   Q L  P +V KP   GSS+G+  IK+   +     Q   + HG  +L E+ + G E
Sbjct: 130 TAIEQQLGLPLFV-KPAAEGSSVGVFKIKEVGELAKTYPQLKQY-HG-AILAEKAITGGE 186

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
             C ++GD  L    I +P ++FY YE KY+  ++ +  P+ +     + +Q++A  A  
Sbjct: 187 YACSILGDEVLPSIRI-IPTTEFYDYEAKYNRDDTVYQCPSDLSEAQEQTMQQIARKAFA 245

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           AIG +G SR DFL D     ++ LE+N  PGMT  S+ P  A   G  F  L + ++E
Sbjct: 246 AIGGKGWSRVDFLRDD-EGTLYLLELNTVPGMTSHSLVPMAAKARGMDFATLCVRILE 302


>gi|110598234|ref|ZP_01386510.1| D-alanine--D-alanine ligase [Chlorobium ferrooxidans DSM 13031]
 gi|110340149|gb|EAT58648.1| D-alanine--D-alanine ligase [Chlorobium ferrooxidans DSM 13031]
          Length = 369

 Score =  166 bits (420), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 96/259 (37%), Positives = 148/259 (57%), Gaps = 23/259 (8%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+AF VLHG++GEDG +Q  L+   IPYT  G+LASA++MDK  +K  V+  G+ V P I
Sbjct: 101 DVAFLVLHGSYGEDGRIQGFLDTCAIPYTGCGVLASAVTMDKALTKLCVADAGIAVAPGI 160

Query: 112 LVNRFTMDSQHLISP-------------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS 158
            +    + S +L  P             P  IKP   GSS+GI  +     +PL L  + 
Sbjct: 161 TL----LSSDYLADPDSFHTRIDREFEYPLFIKPANLGSSVGISKVHNPAELPLALKTAC 216

Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVL 215
           + +   ++L+E+ + G E+   V+G+A  +V+   EI  P SDFY YE KY   ++   +
Sbjct: 217 TLD--TKILVEKAIKGREIEVAVLGNAQPEVSVCGEIE-PGSDFYDYEDKYIHNSAKTFI 273

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275
           PA+IP  + ++V+ LA  A +A+GCRG+SR DF  D  S+ +   E+N  PG T +S++P
Sbjct: 274 PARIPSVLQEKVRELALRAFKALGCRGMSRIDFFVDEESKSIILNEVNTIPGFTDISMYP 333

Query: 276 EMAAYAGYSFRELLLWMVE 294
           ++   +G  F EL   ++E
Sbjct: 334 KLMEASGIPFPELATRLLE 352


>gi|262373759|ref|ZP_06067037.1| D-alanine-D-alanine ligase B [Acinetobacter junii SH205]
 gi|262311512|gb|EEY92598.1| D-alanine-D-alanine ligase B [Acinetobacter junii SH205]
          Length = 308

 Score =  166 bits (420), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 107/300 (35%), Positives = 164/300 (54%), Gaps = 14/300 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-VDRSVGLVLAHLKPDLAFNVLH 59
           +AVL GG S+ER VSL SG+A   AL  +G +    D  ++SV  ++A+   D AF VLH
Sbjct: 10  VAVLFGGKSAERAVSLDSGQAVLEALLRSGVQAEAFDPQEKSVTELVAY---DRAFIVLH 66

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G  GEDG +Q +LE L IPYT +G+  SA+ MDK+++KQ+     +P  P  ++ + + D
Sbjct: 67  GRGGEDGQIQGVLEWLNIPYTGTGVQGSAIGMDKVKTKQIWQGSDLPTAPYRIITKDS-D 125

Query: 120 SQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
              +I+    P +IKP+  GSS+G+  ++K +     + +++   H   ++ E+++ G E
Sbjct: 126 LNSVIADLGLPVIIKPVHEGSSVGMSKVEKAEDFAAAIEKAT--QHDAVVMAEKWITGRE 183

Query: 177 LTCGVMGDASLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
            T   +    L V  +  P    FY YE KY   +  + +P  +     K +Q L   A 
Sbjct: 184 FTISFLNGQPLPVIRLQPPADVAFYDYEAKYQRNDVQYGIPCGLSETEEKSLQALCLRAF 243

Query: 236 QAIGCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           QA+G  G  R D + D   +  FW LE+N  PGMT  S+ P+ A   GYSF EL L ++E
Sbjct: 244 QAVGAEGWGRIDAMQD--EQGNFWLLEVNTVPGMTSHSLVPKAAQAVGYSFDELCLAILE 301


>gi|168212545|ref|ZP_02638170.1| D-alanine--D-alanine ligase [Clostridium perfringens CPE str.
           F4969]
 gi|170716043|gb|EDT28225.1| D-alanine--D-alanine ligase [Clostridium perfringens CPE str.
           F4969]
          Length = 302

 Score =  166 bits (420), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 95/297 (31%), Positives = 163/297 (54%), Gaps = 8/297 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + ++MGGISSEREVSL+SG++  + ++   ++V +I ++    ++      D A   LHG
Sbjct: 3   VGIIMGGISSEREVSLASGESIFNHIDKEKYEVIKIIINNKRDILEKVKGLDFALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN---RFT 117
            FGEDG VQA L++++IPY+  G L+S+L MDK  SK+V+ +  +     I V       
Sbjct: 63  KFGEDGTVQAFLDIMDIPYSGCGALSSSLCMDKNLSKKVLKAENIRTAKWITVKSIEEID 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            D    I  P  +KP  GGSS+    + K + I   +++   ++  ++++IE ++ G E+
Sbjct: 123 YDKIEEIGYPVFVKPNNGGSSVATFKVYKKEDIKNSVMEGLKYD--EEVIIESFIKGREI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC +       + EI   K+DFY Y+ KY++  + H LP ++   +Y EV+ +A    + 
Sbjct: 181 TCPIFNGEFFPILEIK-SKADFYDYKQKYAANGAEH-LPVQLEKSLYDEVKEMALKTFEV 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           + C   +R D +        + LE+N  PGMT  S+FP+ A   G S+ + +  ++E
Sbjct: 239 LKCEVYARVDMIISEEGVP-YILEVNTLPGMTATSLFPQSAESRGISYSKFIDLIIE 294


>gi|325123864|gb|ADY83387.1| D-alanine-D-alanine ligase B [Acinetobacter calcoaceticus PHEA-2]
          Length = 308

 Score =  166 bits (420), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 107/300 (35%), Positives = 163/300 (54%), Gaps = 14/300 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-VDRSVGLVLAHLKPDLAFNVLH 59
           +AVL GG S+ER VSL SG+A   AL  +G +    D  DRSV  ++ +   D AF VLH
Sbjct: 10  VAVLFGGKSAERAVSLDSGQAVLDALLRSGVQAEAFDPQDRSVTELVNY---DRAFIVLH 66

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G  GEDG +Q +LE L +PYT +G+  SA+ MDK+++KQ+     +P  P  ++ + T D
Sbjct: 67  GRGGEDGQIQGVLEWLNLPYTGTGVQGSAIGMDKVKTKQIWQGSDLPTAPYRIITKET-D 125

Query: 120 SQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
              +I+    P +IKP+  GSS+G+  ++K +     + +++   H   ++ E+++ G E
Sbjct: 126 LDAVIADLGLPVIIKPVHEGSSVGMSKVEKAEDFAAAIEKAT--QHDAVVMAEKWITGRE 183

Query: 177 LTCGVMGDASLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
            T   +    L V  +  P    FY YE KY   +  + +P  +     K +Q L   A 
Sbjct: 184 FTISFLNGQPLPVIRLQPPADVAFYDYEAKYQRNDVEYGIPCGLSEAEEKNLQALCLRAF 243

Query: 236 QAIGCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           QA+G  G  R D + D   +  FW LE+N  PGMT  S+ P+ A   GYSF EL + ++E
Sbjct: 244 QAVGAEGWGRIDAMQD--EQGNFWLLEVNTVPGMTSHSLVPKAAKAVGYSFDELCVAILE 301


>gi|225376500|ref|ZP_03753721.1| hypothetical protein ROSEINA2194_02142 [Roseburia inulinivorans DSM
           16841]
 gi|225211672|gb|EEG94026.1| hypothetical protein ROSEINA2194_02142 [Roseburia inulinivorans DSM
           16841]
          Length = 351

 Score =  166 bits (420), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 109/345 (31%), Positives = 171/345 (49%), Gaps = 55/345 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-----DRSVGLV---------- 45
           + VL GG+S+ER+VS  +G   + AL + G  V  +DV     D+   L           
Sbjct: 3   IVVLAGGLSTERDVSFKTGDMVSKALRENGHNVILLDVFMGYSDKEENLTGIFDRTEEVS 62

Query: 46  -----LAHLKPDLA----------------------------FNVLHGNFGEDGLVQAIL 72
                +    PDLA                            F  LHG  GE+G +QA  
Sbjct: 63  VQVKDIPETAPDLAKVKASRKDQSDCFFGPNVINMCRMADIVFMALHGENGENGKIQAAF 122

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFTMDSQHLISPPYV 129
           +L  I YT +G L+SAL+MDK  +KQ+  + G+P    I +   NR     +  +  P V
Sbjct: 123 DLFGIKYTGTGYLSSALAMDKGMAKQLFIAGGIPTPQGISMKKENRKDSAKELGLKLPCV 182

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           +KP  GGSS+G+ +++ +      L ++  W   D L+IE+YV+G E + GV+   +L +
Sbjct: 183 VKPCCGGSSIGVTIVRTEDEFKSALDEAFKWE--DNLIIEEYVEGREFSVGVIDYKALPI 240

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
            EIA P   FY Y+ KY + ++    PA++P +I +++Q  A    + +G    SRSDFL
Sbjct: 241 IEIA-PIQGFYDYKNKYKAGSAVETCPAELPEEITEQMQHYAERVAEVLGLNTYSRSDFL 299

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            +  + +++ LE N  PGMTP S+ P+ A   G +F +L   ++E
Sbjct: 300 LNK-NNEIYCLEANTLPGMTPTSLLPQEAGVLGINFNQLCEKLIE 343


>gi|15599606|ref|NP_253100.1| D-alanine--D-alanine ligase [Pseudomonas aeruginosa PAO1]
 gi|296391119|ref|ZP_06880594.1| D-alanine--D-alanine ligase [Pseudomonas aeruginosa PAb1]
 gi|39931188|sp|Q9LCT6|DDLB_PSEAE RecName: Full=D-alanine--D-alanine ligase B; AltName:
           Full=D-Ala-D-Ala ligase B; AltName: Full=D-alanylalanine
           synthetase B
 gi|9950642|gb|AAG07798.1|AE004856_9 D-alanine--D-alanine ligase [Pseudomonas aeruginosa PAO1]
 gi|6715617|gb|AAF26456.1| D-alanine:D-alanine ligase B [Pseudomonas aeruginosa PAO1]
          Length = 319

 Score =  166 bits (420), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 108/304 (35%), Positives = 164/304 (53%), Gaps = 10/304 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL SG     +L  AG     IDV   +   L   K D AF +LHG
Sbjct: 21  VAVLFGGKSAEREVSLKSGAMVLQSLLAAGVDAFGIDVGEDLLQRLVEEKIDRAFIILHG 80

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFT 117
             GEDG +Q +LE   IPYT SG+LASAL+MDK+R+K+V  S G+P  P   V       
Sbjct: 81  RGGEDGSMQGLLECAGIPYTGSGVLASALAMDKLRTKRVWLSLGLPT-PDYAVLASEDDC 139

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            ++   +  P ++KP   GSS+G+  +     +     +++ ++   Q+L+EQ++ G E 
Sbjct: 140 REAAQRLGFPLIVKPAHEGSSIGMAKVGGLDELIAAWREAARYDS--QVLVEQWISGPEF 197

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           T   +    L    +  P + FY Y+ KY + ++ + +P  +     +E++ L   A  A
Sbjct: 198 TVATLRGQVLPAIRLGTPHT-FYDYDAKYLASDTRYQVPCGLDEAKERELKELTARACDA 256

Query: 238 IGCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +G +G  R+D + D   R  FW LE+N  PGMT  S+ P  A  AG  F++L+L ++ D+
Sbjct: 257 LGIQGWGRADVMQDAEGR--FWLLEVNTAPGMTDHSLVPMAARAAGLDFQQLVLAILADS 314

Query: 297 SCLR 300
              R
Sbjct: 315 REAR 318


>gi|116052444|ref|YP_792756.1| D-alanine--D-alanine ligase [Pseudomonas aeruginosa UCBPP-PA14]
 gi|115587665|gb|ABJ13680.1| D-alanine--D-alanine ligase [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 319

 Score =  166 bits (419), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 108/304 (35%), Positives = 163/304 (53%), Gaps = 10/304 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL SG     +L  AG     IDV   +   L   K D AF +LHG
Sbjct: 21  VAVLFGGKSAEREVSLKSGAMVLQSLLAAGVDAFGIDVGEDLLQRLVEEKIDRAFIILHG 80

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFT 117
             GEDG +Q +LE   IPYT SG+LASAL+MDK+R+K+V  S G+P  P   V       
Sbjct: 81  RGGEDGSMQGLLECAGIPYTGSGVLASALAMDKLRTKRVWLSLGLPT-PDYAVLASEDDC 139

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            D+   +  P ++KP   GSS+G+  +     +     +++ ++   Q+L+EQ++ G E 
Sbjct: 140 RDAAQRLGFPLIVKPAHEGSSIGMAKVGGLDELIAAWREAARYDS--QVLVEQWISGPEF 197

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           T   +    L    +  P + FY Y+ KY + ++ + +P  +     +E++ L   A  A
Sbjct: 198 TVATLRGQVLPAIRLGTPHT-FYDYDAKYLASDTRYQVPCGLDEAKERELKELTARACDA 256

Query: 238 IGCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +G +G  R+D + D   R  FW LE+N  PGMT  S+ P     AG  F++L+L ++ D+
Sbjct: 257 LGIQGWGRADVMQDAEGR--FWLLEVNTAPGMTDHSLVPMAVRAAGLDFQQLVLAILADS 314

Query: 297 SCLR 300
              R
Sbjct: 315 REAR 318


>gi|77166309|ref|YP_344834.1| D-alanine--D-alanine ligase [Nitrosococcus oceani ATCC 19707]
 gi|254435287|ref|ZP_05048794.1| D-ala D-ala ligase N-terminal domain protein, putative
           [Nitrosococcus oceani AFC27]
 gi|123593332|sp|Q3J792|DDL_NITOC RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|76884623|gb|ABA59304.1| D-alanine--D-alanine ligase [Nitrosococcus oceani ATCC 19707]
 gi|207088398|gb|EDZ65670.1| D-ala D-ala ligase N-terminal domain protein, putative
           [Nitrosococcus oceani AFC27]
          Length = 316

 Score =  166 bits (419), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 103/292 (35%), Positives = 161/292 (55%), Gaps = 10/292 (3%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62
           VLMGG S+ERE+SL SG A   +L   G +   IDVD+ V   L+  +   AF  LHG  
Sbjct: 15  VLMGGYSAEREISLKSGTAVLQSLLRQGIEAHGIDVDKGVLTQLSKGQFTRAFIALHGRG 74

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
           GEDG++Q +LE L +PYT SG+L SAL+MDK+RSK++     +P     ++ R T  +  
Sbjct: 75  GEDGVIQGVLETLNLPYTGSGVLGSALTMDKLRSKRLWRGMDLPTADFSVLTRDT--NPA 132

Query: 123 LISP----PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           LI+     P ++KP + GSSLG++ ++  +++     ++  ++    +  E+++ G E T
Sbjct: 133 LIAADLGLPLIVKPAREGSSLGMMKVESIEALQSAYREAVIFDTA--VFAERWLPGAEYT 190

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             ++ D  L +  +  P+  FY +E KY +  + +  P  +     +++Q LA  A QA+
Sbjct: 191 AAILADRVLPLIRLETPRV-FYDFEAKYHANTTRYFCPCGLSEKQEQDLQALALEAFQAL 249

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           G  G  R D   D  +   + LEIN  PGMT  S+ P  A  AG  F E++L
Sbjct: 250 GASGWGRVDLRCDEKAHP-YLLEINTVPGMTDHSLVPMAAQAAGIEFDEMVL 300


>gi|332531951|ref|ZP_08407835.1| D-alanine--D-alanine ligase [Pseudoalteromonas haloplanktis
           ANT/505]
 gi|332038578|gb|EGI75021.1| D-alanine--D-alanine ligase [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 306

 Score =  166 bits (419), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 102/297 (34%), Positives = 159/297 (53%), Gaps = 7/297 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL SG+A  +AL+++G      D        L  L  +  F  LHG
Sbjct: 11  VAVLLGGNSAEREVSLRSGQAVLNALQNSGIDAIAFDPQSRSLWELKELNVERVFIALHG 70

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN-RFTMD 119
             GEDG VQ  LE + +PYT S +L SAL+MDK+R K +  S G+   P  +V+ +   D
Sbjct: 71  RGGEDGTVQGALEFMNLPYTGSNVLGSALAMDKVRCKHLFKSAGLSTAPYTVVDAKKGFD 130

Query: 120 SQHLIS--PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
           ++ ++      ++KP   GSS+G+      Q +   L  ++++   +Q+L+EQ++ G E 
Sbjct: 131 AKAIMDEFKKVMVKPSHEGSSIGMAQASTTQELEDAL--ANAFKFDNQVLVEQWITGREF 188

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           T  V+GD    V E+  P   FY Y+ KY S  + +  PA +     K +Q ++  A   
Sbjct: 189 TITVLGDDVQPVIEMTTPNG-FYDYQAKYQSNTTQYHCPADLSEQDTKYLQAISLDAFDL 247

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           +G  G  R D + D      + LE+N  PGMT  S+ P  A   G +F +L++ ++E
Sbjct: 248 VGASGWGRVDAMQDEQGN-FYLLEVNTVPGMTEKSLVPMAAKANGATFEQLVVRILE 303


>gi|313893662|ref|ZP_07827230.1| D-ala D-ala ligase N-terminal domain protein [Veillonella sp. oral
           taxon 158 str. F0412]
 gi|313441806|gb|EFR60230.1| D-ala D-ala ligase N-terminal domain protein [Veillonella sp. oral
           taxon 158 str. F0412]
          Length = 310

 Score =  165 bits (418), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 100/291 (34%), Positives = 161/291 (55%), Gaps = 12/291 (4%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLHGN 61
           VLMGG S E EVS  +G A A AL   G+K   ++++ R+V   +  L  ++ FN +HG 
Sbjct: 8   VLMGGPSEEAEVSRRTGAAIAEALVSKGYKAQTLELNPRTVLKDIDSLGGEVVFNAIHGR 67

Query: 62  FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ 121
           +GEDG +Q +LE+ EIPYT SGI+A A+ M+K  SK V     +P   S   N     ++
Sbjct: 68  YGEDGALQGLLEMAEIPYTGSGIMAHAVGMNKKVSKDVFKGANIPTARSESYNGNLESAE 127

Query: 122 HLI-------SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
            +I       + P V+K    GSS+G+ +++++    L+   + +  +   L++EQ++DG
Sbjct: 128 AIIDHIRKEFTIPVVVKSATQGSSIGVTIVREESQ--LEAAVTEALKYDPILVVEQFLDG 185

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
            E T  V+   +L V EI  P S  Y Y+ KY+   + +++PA I  ++  E+QR+  L 
Sbjct: 186 REFTVAVLDGKALSVIEIR-PHSGEYDYKSKYTVGATEYLVPAPISDEMTAEMQRIGELV 244

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285
           ++ +   G+ R D + D  + K++ LE N  PGMT  S+ P+ A   G  F
Sbjct: 245 YREVQGSGVIRVDIMTDH-ADKMYVLEYNTVPGMTATSLVPKAANEMGIDF 294


>gi|294792039|ref|ZP_06757187.1| D-alanine--D-alanine ligase [Veillonella sp. 6_1_27]
 gi|294457269|gb|EFG25631.1| D-alanine--D-alanine ligase [Veillonella sp. 6_1_27]
          Length = 310

 Score =  165 bits (418), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 99/291 (34%), Positives = 158/291 (54%), Gaps = 12/291 (4%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLHGN 61
           VLMGG S E EVS  +G A A ALE  G+    ++++ R+V   +  L  ++ FN +HG 
Sbjct: 8   VLMGGPSKEAEVSRRTGAAIAEALESKGYNAQTLELNPRTVLKDIESLDGEIVFNAIHGR 67

Query: 62  FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ 121
           +GEDG +Q +LE+ EIPYT SGI+A A+ M+K  SK V     +P   S   N     ++
Sbjct: 68  YGEDGALQGLLEMAEIPYTGSGIMAHAVGMNKKVSKDVFKGANIPTATSESFNGNLESAE 127

Query: 122 HLI-------SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
            +I       + P V+K    GSS+G+ +++ +    L+   + +  +   L++EQ++DG
Sbjct: 128 AIIGHIRKQFTIPVVVKSATQGSSIGVTIVRDEAQ--LEAAVTEALKYDPILVVEQFLDG 185

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
            E T  V+   +L V EI  P S  Y Y  KY+   + +++PA I  ++  E+QR+  L 
Sbjct: 186 REFTVSVLDGKALSVIEIR-PHSGEYDYTSKYTVGATEYLVPAPISEEMTAEMQRIGELV 244

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285
           ++ +   G+ R D + D  +  ++ LE N  PGMT  S+ P+ A   G  F
Sbjct: 245 YREVQGSGVIRVDIMTDH-ADNMYVLEYNTVPGMTATSLVPKAAKEMGIDF 294


>gi|168208103|ref|ZP_02634108.1| D-alanine--D-alanine ligase [Clostridium perfringens E str.
           JGS1987]
 gi|170660612|gb|EDT13295.1| D-alanine--D-alanine ligase [Clostridium perfringens E str.
           JGS1987]
          Length = 302

 Score =  165 bits (418), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 96/297 (32%), Positives = 163/297 (54%), Gaps = 8/297 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + ++MGGISSEREVSL+SG++  + ++   ++V +I ++    ++      D A   LHG
Sbjct: 3   VGIIMGGISSEREVSLASGESIFNHIDKEKYEVIKIIINNKRDILEKVKGLDFALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN---RFT 117
            FGEDG VQA L++++IPY+  G L+S+L MDK  SK+V+ +  +     I V       
Sbjct: 63  KFGEDGTVQAFLDIMDIPYSGCGALSSSLCMDKNLSKKVLKAENIRTAKWITVKSIEEID 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            D    I  P  +KP  GGSS+    + K + I   +++   ++  ++++IE +V G E+
Sbjct: 123 YDKIEEIGYPVFVKPNNGGSSVATFKVYKKEEIKDAVMEGLKYD--EEVIIESFVKGREI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC +       + EI   K+DFY Y+ KY++  + H LP ++   +Y EV+ +A    + 
Sbjct: 181 TCPIFNGELFPILEIK-SKADFYDYKQKYAANGAEH-LPVQLEKSLYDEVKEMALKTFEV 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           + C   +R D +        + LE+N  PGMT  S+FP+ A   G S+ + +  ++E
Sbjct: 239 LKCEVYARVDMIISEEGVP-YILEVNTLPGMTATSLFPQSAESRGISYSKFIDLIIE 294


>gi|254515239|ref|ZP_05127300.1| D-alanine--D-alanine ligase B [gamma proteobacterium NOR5-3]
 gi|219677482|gb|EED33847.1| D-alanine--D-alanine ligase B [gamma proteobacterium NOR5-3]
          Length = 315

 Score =  165 bits (418), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 112/285 (39%), Positives = 156/285 (54%), Gaps = 10/285 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP-DLAFNVLH 59
           MAVL GG S EREVSLSS K   +AL D G++   +D           LK  D+AFN+ H
Sbjct: 12  MAVLFGGTSGEREVSLSSAKTVLAALADGGYQPLALDTGEPEWWT--GLKGVDIAFNIQH 69

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G  GEDG+ Q +L  L +  T S +L SAL+MDK+RSKQ+  + G+P     LVN  T D
Sbjct: 70  GVGGEDGVTQGLLHSLGVVGTGSQVLGSALAMDKLRSKQIWRALGLPTADFALVNAHT-D 128

Query: 120 SQHLISP--PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
           +Q L++      +KP   GSSLG+  +   +S  L   +S++   GDQ+L E+++DG E 
Sbjct: 129 AQALLADWGAAFVKPCSEGSSLGMTRVDSPESF-LQACESAA-VFGDQILAERFIDGPEY 186

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           T  ++GD +L    I   + +FY YE KY +  + + +P  +  D    +  LA  A  A
Sbjct: 187 TVAILGDRALPPIHIESAR-EFYDYEAKYKANTTRYNIPCGLSADEETALCTLALKAFAA 245

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAG 282
           +GC    R D + D  S K   LE+N  PGMT  S+ P  A  AG
Sbjct: 246 LGCSVWGRVDLMRDS-SGKFQLLEVNTVPGMTDHSLVPMAATAAG 289


>gi|262370858|ref|ZP_06064182.1| D-alanine-D-alanine ligase B [Acinetobacter johnsonii SH046]
 gi|262314220|gb|EEY95263.1| D-alanine-D-alanine ligase B [Acinetobacter johnsonii SH046]
          Length = 309

 Score =  165 bits (418), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 105/300 (35%), Positives = 166/300 (55%), Gaps = 14/300 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-VDRSVGLVLAHLKPDLAFNVLH 59
           +AVL+GG S+EREVSL SG A   AL  +G      D  +RSV  ++ +   D AF VLH
Sbjct: 10  VAVLLGGKSAEREVSLDSGAAVLEALVRSGVNAEAFDPQERSVTELVGY---DRAFIVLH 66

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G  GEDG +Q +LE L IPYT +G+  SA+ MDK+++KQV     +P  P  ++++ + D
Sbjct: 67  GRGGEDGQIQGVLEWLNIPYTGTGVQGSAIGMDKVKTKQVWQGSDLPTAPYRIISQES-D 125

Query: 120 SQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
              +++    P +IKP+  GSS+G+  ++K + +   + +++   H   ++ E+++ G E
Sbjct: 126 LAEVVANLGLPLIIKPVHEGSSVGMSKVEKAEDLAAAIAKAT--QHDAVVMAEKWITGRE 183

Query: 177 LTCGVMGDASLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
            T   +    L V  +  P    FY YE KY   +  + +P  +  +  +++Q L   A 
Sbjct: 184 FTISFLDGQPLPVIRLQPPADVAFYDYEAKYQRNDVEYGIPCGLSTEEEQKLQALCLRAF 243

Query: 236 QAIGCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           QA+G  G  R D + D   +  FW LE+N  PGMT  S+ P+ A   GYSF  L + ++E
Sbjct: 244 QAVGASGWGRIDAMQD--EQGNFWLLEVNTVPGMTSHSLVPKAANAVGYSFDALCVQILE 301


>gi|22127498|ref|NP_670921.1| D-alanine--D-alanine ligase [Yersinia pestis KIM 10]
 gi|45443359|ref|NP_994898.1| D-alanine--D-alanine ligase [Yersinia pestis biovar Microtus str.
           91001]
 gi|51595040|ref|YP_069231.1| D-alanine--D-alanine ligase [Yersinia pseudotuberculosis IP 32953]
 gi|108809535|ref|YP_653451.1| D-alanine--D-alanine ligase [Yersinia pestis Antiqua]
 gi|108810588|ref|YP_646355.1| D-alanine--D-alanine ligase [Yersinia pestis Nepal516]
 gi|145600340|ref|YP_001164416.1| D-alanine--D-alanine ligase [Yersinia pestis Pestoides F]
 gi|150260408|ref|ZP_01917136.1| D-alanine--D-alanine ligase B [Yersinia pestis CA88-4125]
 gi|153949608|ref|YP_001402342.1| D-alanine--D-alanine ligase [Yersinia pseudotuberculosis IP 31758]
 gi|162421556|ref|YP_001607293.1| D-alanine--D-alanine ligase [Yersinia pestis Angola]
 gi|165928190|ref|ZP_02224022.1| D-alanine--D-alanine ligase [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165937767|ref|ZP_02226328.1| D-alanine--D-alanine ligase [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|166008968|ref|ZP_02229866.1| D-alanine--D-alanine ligase [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166212032|ref|ZP_02238067.1| D-alanine--D-alanine ligase [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|167401219|ref|ZP_02306719.1| D-alanine--D-alanine ligase [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167421968|ref|ZP_02313721.1| D-alanine--D-alanine ligase [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167426436|ref|ZP_02318189.1| D-alanine--D-alanine ligase [Yersinia pestis biovar Mediaevalis
           str. K1973002]
 gi|167469526|ref|ZP_02334230.1| D-alanine--D-alanine ligase [Yersinia pestis FV-1]
 gi|170025731|ref|YP_001722236.1| D-alanine--D-alanine ligase [Yersinia pseudotuberculosis YPIII]
 gi|186894046|ref|YP_001871158.1| D-alanine--D-alanine ligase [Yersinia pseudotuberculosis PB1/+]
 gi|218927753|ref|YP_002345628.1| D-alanine--D-alanine ligase [Yersinia pestis CO92]
 gi|229837052|ref|ZP_04457217.1| D-alanine--D-alanine ligase B [Yersinia pestis Pestoides A]
 gi|229840445|ref|ZP_04460604.1| D-alanine--D-alanine ligase B [Yersinia pestis biovar Orientalis
           str. PEXU2]
 gi|229843013|ref|ZP_04463163.1| D-alanine--D-alanine ligase B [Yersinia pestis biovar Orientalis
           str. India 195]
 gi|229900780|ref|ZP_04515904.1| D-alanine--D-alanine ligase B [Yersinia pestis Nepal516]
 gi|270487850|ref|ZP_06204924.1| D-ala D-ala ligase N-terminal domain protein [Yersinia pestis KIM
           D27]
 gi|294502645|ref|YP_003566707.1| D-alanylalanine synthetase [Yersinia pestis Z176003]
 gi|22095560|sp|Q8ZIE7|DDL_YERPE RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|81640386|sp|Q66EK3|DDL_YERPS RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|123073601|sp|Q1CMM5|DDL_YERPN RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|123372037|sp|Q1C216|DDL_YERPA RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|166198514|sp|A4TQ81|DDL_YERPP RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|167012333|sp|A7FM64|DDL_YERP3 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|226696394|sp|A9R122|DDL_YERPG RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|229486025|sp|B2K4E8|DDL_YERPB RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|229486026|sp|B1JK79|DDL_YERPY RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|21960595|gb|AAM87172.1|AE013964_8 D-alanine-D-alanine ligase B [Yersinia pestis KIM 10]
 gi|45438228|gb|AAS63775.1| D-alanine--D-alanine ligase B [Yersinia pestis biovar Microtus str.
           91001]
 gi|51588322|emb|CAH19930.1| D-alanine-D-alanine ligase B, affects cell division [Yersinia
           pseudotuberculosis IP 32953]
 gi|108774236|gb|ABG16755.1| D-alanine--D-alanine ligase [Yersinia pestis Nepal516]
 gi|108781448|gb|ABG15506.1| D-alanine--D-alanine ligase [Yersinia pestis Antiqua]
 gi|115346364|emb|CAL19236.1| D-alanine--D-alanine ligase B [Yersinia pestis CO92]
 gi|145212036|gb|ABP41443.1| D-alanine--D-alanine ligase [Yersinia pestis Pestoides F]
 gi|149289816|gb|EDM39893.1| D-alanine--D-alanine ligase B [Yersinia pestis CA88-4125]
 gi|152961103|gb|ABS48564.1| D-alanine--D-alanine ligase [Yersinia pseudotuberculosis IP 31758]
 gi|162354371|gb|ABX88319.1| D-alanine--D-alanine ligase [Yersinia pestis Angola]
 gi|165914179|gb|EDR32795.1| D-alanine--D-alanine ligase [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|165919801|gb|EDR37102.1| D-alanine--D-alanine ligase [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165992307|gb|EDR44608.1| D-alanine--D-alanine ligase [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166206778|gb|EDR51258.1| D-alanine--D-alanine ligase [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|166960105|gb|EDR56126.1| D-alanine--D-alanine ligase [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167049244|gb|EDR60652.1| D-alanine--D-alanine ligase [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167054534|gb|EDR64342.1| D-alanine--D-alanine ligase [Yersinia pestis biovar Mediaevalis
           str. K1973002]
 gi|169752265|gb|ACA69783.1| D-alanine--D-alanine ligase [Yersinia pseudotuberculosis YPIII]
 gi|186697072|gb|ACC87701.1| D-alanine--D-alanine ligase [Yersinia pseudotuberculosis PB1/+]
 gi|229682119|gb|EEO78211.1| D-alanine--D-alanine ligase B [Yersinia pestis Nepal516]
 gi|229689889|gb|EEO81948.1| D-alanine--D-alanine ligase B [Yersinia pestis biovar Orientalis
           str. India 195]
 gi|229696811|gb|EEO86858.1| D-alanine--D-alanine ligase B [Yersinia pestis biovar Orientalis
           str. PEXU2]
 gi|229705995|gb|EEO92004.1| D-alanine--D-alanine ligase B [Yersinia pestis Pestoides A]
 gi|262360675|gb|ACY57396.1| D-alanylalanine synthetase [Yersinia pestis D106004]
 gi|262364622|gb|ACY61179.1| D-alanylalanine synthetase [Yersinia pestis D182038]
 gi|270336354|gb|EFA47131.1| D-ala D-ala ligase N-terminal domain protein [Yersinia pestis KIM
           D27]
 gi|294353104|gb|ADE63445.1| D-alanylalanine synthetase [Yersinia pestis Z176003]
 gi|320016923|gb|ADW00495.1| D-alanine--D-alanine ligase B [Yersinia pestis biovar Medievalis
           str. Harbin 35]
          Length = 306

 Score =  165 bits (417), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 107/298 (35%), Positives = 163/298 (54%), Gaps = 13/298 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL SG+A  + L++AG     +D        L     D  F  LHG
Sbjct: 5   VAVLLGGTSAEREVSLLSGQAVLAGLKEAGIDAYGVDTKDFPVTQLKEQGFDKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---FT 117
             GEDG +Q +LE L++PYT SG++ASAL+MDK+R+K V  + G+P+ P + +NR    T
Sbjct: 65  RGGEDGTLQGVLEFLQLPYTGSGVMASALTMDKLRTKLVWQALGLPISPYVALNRQQFET 124

Query: 118 MDSQHLISP------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
           +  + L++       P ++KP   GSS+G+   K D +  L      ++ H   +LIE++
Sbjct: 125 LSPEELVACVAKLGLPLIVKPSHEGSSVGM--SKVDHASELQKALVEAFQHDSDVLIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++GD  L    I  P   FY Y+ KY S  + +  P+ +  +  +++  LA
Sbjct: 183 LSGPEFTVAILGDEVLPSIRIQ-PPGVFYDYDAKYLSDKTQYFCPSGLSDESEQQLAALA 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
             A+ A+ C G  R D + D      + LE+N  PGMT  S+ P  A   G SF +L+
Sbjct: 242 LQAYHALDCSGWGRVDVMQD-RDGHFYLLEVNTSPGMTSHSLVPMAARQYGLSFSQLV 298


>gi|269798172|ref|YP_003312072.1| D-alanine/D-alanine ligase [Veillonella parvula DSM 2008]
 gi|282850401|ref|ZP_06259780.1| D-ala D-ala ligase N-terminal domain protein [Veillonella parvula
           ATCC 17745]
 gi|294793904|ref|ZP_06759041.1| D-alanine--D-alanine ligase [Veillonella sp. 3_1_44]
 gi|269094801|gb|ACZ24792.1| D-alanine/D-alanine ligase [Veillonella parvula DSM 2008]
 gi|282579894|gb|EFB85298.1| D-ala D-ala ligase N-terminal domain protein [Veillonella parvula
           ATCC 17745]
 gi|294455474|gb|EFG23846.1| D-alanine--D-alanine ligase [Veillonella sp. 3_1_44]
          Length = 310

 Score =  165 bits (417), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 99/291 (34%), Positives = 158/291 (54%), Gaps = 12/291 (4%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLHGN 61
           VLMGG S E EVS  +G A A ALE  G+    ++++ R+V   +  L  ++ FN +HG 
Sbjct: 8   VLMGGPSKEAEVSRRTGAAIAEALESKGYNAQTLELNPRTVLKDIESLGGEIVFNAIHGR 67

Query: 62  FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ 121
           +GEDG +Q +LE+ EIPYT SGI+A A+ M+K  SK V     +P   S   N     ++
Sbjct: 68  YGEDGALQGLLEMAEIPYTGSGIMAHAVGMNKKVSKDVFKGANIPTATSESFNGNLESAE 127

Query: 122 HLI-------SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
            +I       + P V+K    GSS+G+ +++ +    L+   + +  +   L++EQ++DG
Sbjct: 128 AIIGHIRKQFTIPVVVKSATQGSSIGVTIVRDEAQ--LEAAVTEALKYDPILVVEQFLDG 185

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
            E T  V+   +L V EI  P S  Y Y  KY+   + +++PA I  ++  E+QR+  L 
Sbjct: 186 REFTVSVLDGKALSVIEIR-PHSGEYDYTSKYTVGATEYLVPAPISEEMTAEMQRIGELV 244

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285
           ++ +   G+ R D + D  +  ++ LE N  PGMT  S+ P+ A   G  F
Sbjct: 245 YREVQGSGVIRVDIMTDH-ADNMYVLEYNTVPGMTATSLVPKAAKEMGIDF 294


>gi|121611481|ref|YP_999288.1| D-alanine--D-alanine ligase [Verminephrobacter eiseniae EF01-2]
 gi|190359218|sp|A1WRL3|DDL_VEREI RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|121556121|gb|ABM60270.1| D-alanine--D-alanine ligase [Verminephrobacter eiseniae EF01-2]
          Length = 331

 Score =  165 bits (417), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 107/305 (35%), Positives = 160/305 (52%), Gaps = 11/305 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG+S+EREVSL SG     AL          D  +     L        F  LHG
Sbjct: 16  VAVLMGGVSAEREVSLLSGAGVLRALRARAVDAHAFDTAQGDLGALKREGYARCFIALHG 75

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG VQ  LELL I YT SG++AS++++DK  SK++  S G+P     LV       
Sbjct: 76  RHGEDGTVQGALELLGIAYTGSGVMASSMALDKTMSKRIWRSEGLPTPDWRLVTSGAEAG 135

Query: 121 QHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           Q L  +  P ++KP + GS++G+  + + Q      L ++ ++   ++L EQ++ G ELT
Sbjct: 136 QALQTLGAPMIVKPAREGSTIGLSKVHQAQQCASAYLLAARYD--PEVLCEQFIAGDELT 193

Query: 179 CGVMGDA------SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
           C V+         +L +  I  P  + Y Y+ KY S  + +  P+ +P    + + RLA 
Sbjct: 194 CTVLDQGRRASAQALPLIRIVAPDGN-YDYQHKYFSDATRYHCPSGLPEAQERAIGRLAE 252

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
            A  A+GCRG +R+D +     ++ F LEIN  PGMT  S+ P  A  AG S+ +L L +
Sbjct: 253 QAFSALGCRGWARADIMLRASDQQPFLLEINTAPGMTDHSLVPMSARAAGISYEDLCLRL 312

Query: 293 VEDAS 297
           +  A+
Sbjct: 313 LAMAT 317


>gi|226312432|ref|YP_002772326.1| D-alanine--D-alanine ligase [Brevibacillus brevis NBRC 100599]
 gi|226095380|dbj|BAH43822.1| D-alanine--D-alanine ligase [Brevibacillus brevis NBRC 100599]
          Length = 316

 Score =  165 bits (417), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 102/297 (34%), Positives = 170/297 (57%), Gaps = 12/297 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--LAHLKPDLAFNVL 58
           + V+MGGISSEREVSL +G+   + L+ + ++   I + +   L+  +     D A   L
Sbjct: 3   IGVIMGGISSEREVSLKTGQEMINHLDRSRYEAVPIVITQRADLITQVQQAGIDFALLAL 62

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
           HG +GEDG VQ  LE L IPYT SG+LAS+L M+K  SK ++ + G+   P+ L  +   
Sbjct: 63  HGQYGEDGTVQGALETLGIPYTGSGVLASSLCMNKQLSKMLLKTAGIQT-PAGLYWKDVY 121

Query: 119 DSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
           D Q +  +  P ++KP  GGSS+G+ +++ ++ +   + ++S  + G  +LIE Y+ G E
Sbjct: 122 DPQAVEQLGYPVIVKPNLGGSSIGVQLVQNEKELLSAVQEASYLDQG--ILIEPYLKGTE 179

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           LTC ++    L +  I    S+++ Y  KY    +   +  ++P DI + V+  A  ++Q
Sbjct: 180 LTCAILDGEVLPIIGIRSAHSEWFDYRAKYEDGGAEEKV-IELPPDIQQRVREAALASYQ 238

Query: 237 AIGCRGISRSDFLF---DPLSRKV-FWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
            + C+  +R D +     PL + + + LE+N  PGMT  S+FP+ AA AG +F ++L
Sbjct: 239 LLQCKVYARVDMILCQDMPLCQDMPYVLEVNTLPGMTANSLFPKSAAAAGMTFTQVL 295


>gi|289209358|ref|YP_003461424.1| D-alanine/D-alanine ligase [Thioalkalivibrio sp. K90mix]
 gi|288944989|gb|ADC72688.1| D-alanine/D-alanine ligase [Thioalkalivibrio sp. K90mix]
          Length = 313

 Score =  165 bits (417), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 108/300 (36%), Positives = 160/300 (53%), Gaps = 13/300 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG S ER++SL SG A  +AL   G     +D+ R     +A    D  F  LHG
Sbjct: 12  VAVLMGGWSGERDISLKSGNAVLAALRRQGVDAHAVDLTRETARCMALEGYDRVFIALHG 71

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-SILVNRFTMD 119
             GEDG +Q  L++  +PYT +G+L SAL MDK+  K++ +   +P  P  +L   F  +
Sbjct: 72  ECGEDGTLQGCLDMGGMPYTGTGVLGSALGMDKLACKRLWAGTNLPSAPYRLLTPGFDPE 131

Query: 120 S-QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           +    +  P ++KP +GGSSLGI  + +   +P    +++    G Q+  EQ++ G E T
Sbjct: 132 AVADALGLPLIVKPARGGSSLGITRVDRVADLPA-AFEAARVQPG-QVFAEQWITGREFT 189

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK----EVQRLAFLA 234
             V+G+  L V EI    S FY Y  KY + ++ ++ P   P D+ +    E+Q LA  A
Sbjct: 190 VAVLGNEPLPVIEIRA-ASGFYDYHAKYEADDTGYLCP---PPDLSRSAQLELQSLAIAA 245

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             A+   G  R D L D      F +E+N  PGMT  S+ P+ AA AG  F EL L +++
Sbjct: 246 FAALEGCGWGRVDILQDEHGEN-FLIEVNTIPGMTGHSLVPKAAAQAGIDFDELCLRILD 304


>gi|325980958|ref|YP_004293360.1| D-alanine--D-alanine ligase [Nitrosomonas sp. AL212]
 gi|325530477|gb|ADZ25198.1| D-alanine--D-alanine ligase [Nitrosomonas sp. AL212]
          Length = 305

 Score =  165 bits (417), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 99/297 (33%), Positives = 167/297 (56%), Gaps = 8/297 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL SG+A   AL  +       D        L     D AF  LHG
Sbjct: 9   VAVLLGGRSAEREVSLQSGQAVLDALIRSEVDAYSFDPAEQALEDLLRQGFDRAFIALHG 68

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118
            FGEDG +Q +LE + +PYT SG+++SAL+MDK R+K +  + G+P    +L++  +   
Sbjct: 69  RFGEDGTIQGVLEWMRLPYTGSGVMSSALAMDKWRTKLLWQAVGIPSPRYVLLHSDSNFE 128

Query: 119 DSQHLISPPYVIKPLKGGSSLGI-IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
           +   L+  P ++KP + GS++G+  V  K+  +P   L +    +   +L E+++ G EL
Sbjct: 129 EVSELLGLPLIVKPAREGSTIGLSKVTHKNDLLPAYELAA---QYDALVLAEEFIVGKEL 185

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           T  ++G+  L +  I +   + Y Y+ KY S ++ +  P+ +  ++  E+Q  A  A++ 
Sbjct: 186 TVAILGETPLPIVRIEI-TGELYDYQAKYVSNDTRYFCPSGLSDELELEIQAQALQAYKV 244

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           +GC G  R D +    + + ++LE+N  PGMT  S+ P  A  AG SF +L++ +++
Sbjct: 245 LGCHGWGRVDLILTQ-TGQFYFLEVNTSPGMTGHSLVPMAAKTAGISFEDLVMRILD 300


>gi|238791174|ref|ZP_04634813.1| D-alanine--D-alanine ligase [Yersinia intermedia ATCC 29909]
 gi|238729307|gb|EEQ20822.1| D-alanine--D-alanine ligase [Yersinia intermedia ATCC 29909]
          Length = 289

 Score =  165 bits (417), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 103/285 (36%), Positives = 155/285 (54%), Gaps = 13/285 (4%)

Query: 14  VSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILE 73
           +SL SG+A  + L +AG     ID        L     D  F  LHG  GEDG +Q +LE
Sbjct: 1   MSLLSGQAVLAGLREAGIDAHGIDTKDFPVTQLKEQGFDKVFIALHGRGGEDGTLQGVLE 60

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---FTMDSQHLISP---- 126
            L++PYT SG++ASAL+MDK+R+K V  + G+P+ P I +NR    T+ S  L++     
Sbjct: 61  FLQLPYTGSGVMASALTMDKLRTKLVWQASGLPISPYIALNRQQFETLSSVELMACVAKL 120

Query: 127 --PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
             P ++KP   GSS+G+   K DQ+  L      ++ H   +LIE+++ G E T  ++GD
Sbjct: 121 GLPLIVKPSHEGSSVGM--SKVDQADQLHGALEEAFRHDSDVLIEKWLSGPEYTVAILGD 178

Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244
             L    I  P   FY YE KY S  + +  P+ +  ++ +++  L+  A+QA+GC G  
Sbjct: 179 NVLPSIRIQAPGV-FYDYEAKYLSDETQYFCPSGLSDELEQQLATLSLQAYQALGCSGWG 237

Query: 245 RSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           R D + D      + LE+N  PGMT  S+ P  A  +G SF +L+
Sbjct: 238 RVDVMQDS-DGNFYLLEVNTSPGMTSHSLVPMAARQSGLSFSQLV 281


>gi|221133804|ref|ZP_03560109.1| D-alanine-D-alanine ligase B [Glaciecola sp. HTCC2999]
          Length = 321

 Score =  165 bits (417), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 100/294 (34%), Positives = 159/294 (54%), Gaps = 8/294 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +A+L+GG S+EREVSL+SG+A   A++  G +    D  +     L   +   A  +LHG
Sbjct: 6   LAILLGGHSAEREVSLASGEAVFKAVQALGIECIAFDPKQHPLTKLIDEQVTHAMIMLHG 65

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR-FTMD 119
             GEDG +Q  LE L IPYT SG+L SA++MDK+ +K V  +CG+P      +    ++D
Sbjct: 66  RGGEDGTIQGALEWLNIPYTGSGVLGSAIAMDKLHTKHVWQACGLPTAKYTEIKAPISVD 125

Query: 120 SQHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175
                   I P  ++KP   GSS+G+   K   +  L    +++  + +++LIEQY+ G 
Sbjct: 126 EAQTIMLNIGPDLMVKPSHEGSSIGM--SKTGTAEELISAVNTALTYDERVLIEQYIVGT 183

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
           E T  ++G+ +L    +  P   FY YE KY +  + +  P+ +     + + +L+  A 
Sbjct: 184 EYTVSILGENALPSISMVTPNI-FYDYEAKYQTNTTQYHCPSDLNDIDERVIGQLSLDAF 242

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           +A+ C G  R D + D  + +   LE+N  PGMT  S+ P+ A  AGY F EL+
Sbjct: 243 KAVSCNGWGRVDLMRDQKTDEFILLEVNTVPGMTAKSLVPKAAKQAGYDFNELV 296


>gi|254967096|gb|ACT97590.1| putative D-alanine-D-alanine ligase [uncultured organism]
          Length = 310

 Score =  164 bits (416), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 100/291 (34%), Positives = 161/291 (55%), Gaps = 12/291 (4%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLHGN 61
           VLMGG S E EVS  +G A A AL   G+K   ++++ R+V   +  L  ++ FN +HG 
Sbjct: 8   VLMGGPSEEAEVSRRTGAAIAEALVSKGYKAQTLELNPRTVLKDIDSLGGEVVFNAIHGR 67

Query: 62  FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ 121
           +GEDG +Q +LE+ EIPYT SGI+A A+ M+K  SK V     +P   S   N     ++
Sbjct: 68  YGEDGALQGLLEMAEIPYTGSGIMAHAVGMNKKVSKDVFKGANIPTARSESYNGNLESAE 127

Query: 122 HLI-------SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
            +I       + P V+K    GSS+G+ +++++    L+   + +  +   L++EQ++DG
Sbjct: 128 AIIDHIRKEFTIPVVVKSATQGSSIGVTIVREESQ--LEAAVTEALKYDPILVVEQFLDG 185

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
            E T  V+   +L V EI  P S  Y Y+ KY+   + +++PA I  ++  E+QR+  L 
Sbjct: 186 REFTVAVLDGKALSVIEIR-PHSGEYDYKSKYTVGATEYLVPAPISDEMTAEMQRIGELV 244

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285
           ++ +   G+ R D + D  + K++ LE N  PGMT  S+ P+ A   G  F
Sbjct: 245 YREVQGSGVIRVDIMTDH-ADKMYVLEYNTVPGMTVTSLVPKAANEMGIDF 294


>gi|93006854|ref|YP_581291.1| D-alanine--D-alanine ligase [Psychrobacter cryohalolentis K5]
 gi|92394532|gb|ABE75807.1| D-alanine--D-alanine ligase [Psychrobacter cryohalolentis K5]
          Length = 379

 Score =  164 bits (416), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 105/297 (35%), Positives = 159/297 (53%), Gaps = 11/297 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AV+ GG S+ER VSL SG A   AL++ G   +  D        L     D  FNVLHG
Sbjct: 85  VAVIYGGNSNERSVSLDSGAAVLQALQNQGVDATHFDPKHQDITELRQY--DRVFNVLHG 142

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDGL+Q +L+  +IP T SGILASAL MDK+R+KQ+   CG+   P  L+   T   
Sbjct: 143 RGGEDGLLQGVLQWFDIPQTGSGILASALGMDKVRTKQLWQGCGLSTAPFSLLTADTDWQ 202

Query: 121 Q--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           Q  +++  P +IKP+  GSS+G+  +     +P     +++   GD ++ E+++ G E T
Sbjct: 203 QVVNMLGLPLIIKPVHEGSSIGMTKVNNLDELP--AAYATAVQCGDVVMAERWITGREFT 260

Query: 179 CGVMGDASLDVTEIAVPK-SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
             ++ D +  V  +     ++FY +E KY+  ++++ +P  +     K +Q L+  A +A
Sbjct: 261 IVIIDDEAYPVIRLEPADITNFYDFEAKYNRNDTSYYIPCGLSAADEKHLQDLSLSAFRA 320

Query: 238 IGCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +  +G  R D + D      FW LEIN  PGMT  S+ P  A   G  F E L W +
Sbjct: 321 VDAKGWGRIDAMQDEAGN--FWLLEINTVPGMTSHSLVPMAAKARGMDF-ESLCWHI 374


>gi|74316140|ref|YP_313880.1| D-alanine--D-alanine ligase [Thiobacillus denitrificans ATCC 25259]
 gi|123612472|sp|Q3SMH0|DDL_THIDA RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|74055635|gb|AAZ96075.1| D-alanine--D-alanine ligase [Thiobacillus denitrificans ATCC 25259]
          Length = 310

 Score =  164 bits (416), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 103/298 (34%), Positives = 165/298 (55%), Gaps = 8/298 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-VDRSVGLVLAHLKPDLAFNVLH 59
           +AV++GG S+ER VSL+SG A  +AL   G      D   RS+G +++  + D  F  LH
Sbjct: 13  VAVMLGGTSAERPVSLNSGNAVLAALTRQGIDAHAFDPATRSLGDLMSG-EFDRVFIALH 71

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT-- 117
           G +GEDG +Q  LELL IPYT SG++ASA+ MDK R+K +  + G+P     +++  +  
Sbjct: 72  GRYGEDGCMQGALELLGIPYTGSGVMASAVGMDKWRTKLLWRAAGLPTADWAMLDATSDF 131

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
             ++  +  P  +KP + GSS+G+   K  ++  L      +  H   +L E+++DG E 
Sbjct: 132 AATEARLGLPIFVKPAREGSSIGM--SKVTEAGTLQAAYEKAAEHDALVLAEKFIDGAEF 189

Query: 178 TCGVMGDASLDVTEIA-VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           T G++GD++L +  +    +  FY +E KY   ++ +  PA +P      +++LA  A +
Sbjct: 190 TVGIVGDSALPLIRLQPAAEKAFYDFEAKYLRDDTQYHCPAGLPDAQEMSLRKLALDAFR 249

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            +G RG  R D + D L    + LE+N  PGMT  S+ P  A  AG  F  L + ++E
Sbjct: 250 LLGGRGWGRVDLMTDRLGNP-YLLEVNTSPGMTDHSLVPMAARVAGIDFDALCVTILE 306


>gi|146281470|ref|YP_001171623.1| D-alanine--D-alanine ligase [Pseudomonas stutzeri A1501]
 gi|190359206|sp|A4VII0|DDL_PSEU5 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|145569675|gb|ABP78781.1| D-alanine--D-alanine ligase [Pseudomonas stutzeri A1501]
          Length = 314

 Score =  164 bits (416), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 113/300 (37%), Positives = 171/300 (57%), Gaps = 10/300 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL SG A  +AL+ AG     ID    +   L+  + D AF VLHG
Sbjct: 16  VAVLFGGKSAEREVSLKSGAAVLAALQAAGVDAFGIDAGDDLLQRLSSERIDRAFIVLHG 75

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LE   IPYT SGILASAL+MDK+R+KQV  S G+P  P   V    +D 
Sbjct: 76  RGGEDGSMQGLLECAGIPYTGSGILASALAMDKLRTKQVWQSLGLPT-PRHAVLASEVDC 134

Query: 121 Q---HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
           Q    ++  P ++KP   GSS+G+  +     +      +S+++   Q+L+EQ++ G E 
Sbjct: 135 QAAAQMLGFPLIVKPAHEGSSIGMAKVGDVAELIAAWRAASAYDA--QVLVEQWIQGPEF 192

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           T  V+    L    +  P + FY Y+ KY + ++ + +P  +     + ++ L+  A +A
Sbjct: 193 TVAVLHGEVLPPIGLGTPHT-FYDYDAKYLASDTQYRIPCGLDAAREEALKVLSARACEA 251

Query: 238 IGCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +G RG +R D + D  +   FW LE+N  PGMT  S+ P  A  AG  F++L+L +++D+
Sbjct: 252 VGIRGWARVDVMQD--AEGNFWLLEVNTVPGMTDHSLVPMAARAAGLDFQQLVLSILDDS 309


>gi|194290811|ref|YP_002006718.1| d-alanine--d-alanine ligase [Cupriavidus taiwanensis LMG 19424]
 gi|229463747|sp|B3R6V7|DDL_CUPTR RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|193224646|emb|CAQ70657.1| D-alanine-D-alanine ligase B, affects cell division [Cupriavidus
           taiwanensis LMG 19424]
          Length = 327

 Score =  164 bits (416), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 100/304 (32%), Positives = 169/304 (55%), Gaps = 12/304 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VL+GG S+ERE+SL SG    +AL+  G      D        LA    D  F  LHG
Sbjct: 17  VGVLLGGRSAEREISLMSGNGVLAALQSRGVDAHGFDPGLQGVAELAAAGFDRVFIALHG 76

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG +Q +LE L +PYT SG+LASAL+MDK  +K++  + G+   P   +     D 
Sbjct: 77  RYGEDGTIQGLLEQLGVPYTGSGVLASALAMDKQATKRLWMTHGL-ATPRFAMLHADTDF 135

Query: 121 QHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
             +++    P ++KP + GSS+G+  +     +     ++++ +  + ++ E +VDG EL
Sbjct: 136 DAVVADLGLPLIVKPAREGSSIGLTKVTAADQMRAAFDKAAALD--NDVIAETFVDGAEL 193

Query: 178 TCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           TC V+G+     +L V  I  P+++ Y Y+ KY + ++ ++ P+ +  ++ ++VQ LA  
Sbjct: 194 TCPVVGEGDTAEALPVIRIVAPEAN-YDYQNKYFTDDTQYLCPSGLDAEVERQVQALAVQ 252

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           A++ +GCRG +R+D +        F LE+N  PGMT  S+ P  A   G S+ + +L ++
Sbjct: 253 AYRVLGCRGWARADVMLRA-DGTPFLLEMNTSPGMTGHSLVPMAARAVGISYEDFVLQVL 311

Query: 294 EDAS 297
             A+
Sbjct: 312 AAAT 315


>gi|237749167|ref|ZP_04579647.1| D-alanine-D-alanine ligase [Oxalobacter formigenes OXCC13]
 gi|229380529|gb|EEO30620.1| D-alanine-D-alanine ligase [Oxalobacter formigenes OXCC13]
          Length = 321

 Score =  164 bits (416), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 102/304 (33%), Positives = 165/304 (54%), Gaps = 11/304 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VL GG S EREVSL SGKA   AL+  G      D        L   K D  F  LHG
Sbjct: 13  VGVLYGGKSGEREVSLMSGKAVHEALKSKGIDAHLFDTGTHTVAELEKEKFDRVFIALHG 72

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG +Q +LE L++PYT SG++ASA++MDK+ +K++  + G+P  P     +   D 
Sbjct: 73  IYGEDGCMQGLLEELQVPYTGSGVMASAIAMDKIMTKRLWLAEGLPT-PRYTELKANTDF 131

Query: 121 QHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
             +++    P ++KP   GS+LG+  +  D S   +  + ++  H   +L E++++G+EL
Sbjct: 132 NEVVAKLGLPLIVKPACEGSTLGLTRV-TDASQMKEAYELAA-THDQSVLAEEFIEGMEL 189

Query: 178 TCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           TC V+       +L +  I  P ++ Y Y+ KY S  + ++ P  +  ++ K +Q+    
Sbjct: 190 TCAVLERDGKPEALPMIRIIAPGAN-YDYQNKYFSDETKYLCPCGLDAELEKSIQQYVVQ 248

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +++A+GCRG  R D +      K F LE+N  PGMT  S+ P  A  AG  + +L + ++
Sbjct: 249 SYRALGCRGWGRVDVMLRSTDNKPFLLELNSSPGMTGHSLVPMAAKQAGLDYADLCVTLL 308

Query: 294 EDAS 297
             A+
Sbjct: 309 AAAT 312


>gi|187925440|ref|YP_001897082.1| D-alanine--D-alanine ligase [Burkholderia phytofirmans PsJN]
 gi|229463738|sp|B2SYX3|DDL_BURPP RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|187716634|gb|ACD17858.1| D-alanine/D-alanine ligase [Burkholderia phytofirmans PsJN]
          Length = 313

 Score =  164 bits (416), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 107/304 (35%), Positives = 167/304 (54%), Gaps = 19/304 (6%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-VDRSVGLVLAHLKPD---LAFN 56
           +AVL+GG S+EREVSL+SG+     L DAG      D  +R     LA LK +    AFN
Sbjct: 12  VAVLLGGNSAEREVSLNSGRLVLQGLRDAGVDAHPFDPAERP----LAALKEEGFVRAFN 67

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR- 115
            LHG +GE+G +Q  L+   I YT SG+L SAL +DK R+K V    G+P  P   V R 
Sbjct: 68  ALHGGYGENGQIQGALDFYGIKYTGSGVLGSALGLDKFRTKLVWQQLGIPTPPFEAVLRG 127

Query: 116 --FTMDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
             +   S+ +++    P  +KP   GSS+ +I +K   ++P  L+++  ++    +++E+
Sbjct: 128 DDYEARSKEIVAKLGLPLFVKPASEGSSVAVIKVKSADALPAALIEAVKYDK--IVVVEK 185

Query: 171 YVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
            V+ G E T  + G+  L V  I VP  +FY Y  KY + ++ +++P  +  D    ++ 
Sbjct: 186 SVEGGGEYTACIAGNLDLPVIRI-VPAGEFYDYHAKYIANDTQYLIPCGLAADEEARLKV 244

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           LA  A   +GC    R+DF+ D      F LE+N  PGMT  S+ P+ A   G S++EL+
Sbjct: 245 LARRAFDVLGCTDWGRADFMLDADGNPYF-LEVNTAPGMTDHSLPPKAARAVGISYQELV 303

Query: 290 LWMV 293
           + ++
Sbjct: 304 VGVL 307


>gi|220933952|ref|YP_002512851.1| D-alanine/D-alanine ligase [Thioalkalivibrio sp. HL-EbGR7]
 gi|219995262|gb|ACL71864.1| D-alanine/D-alanine ligase [Thioalkalivibrio sp. HL-EbGR7]
          Length = 309

 Score =  164 bits (415), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 106/294 (36%), Positives = 159/294 (54%), Gaps = 10/294 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+ERE+SL SG     AL+ AG     ID  R V  VL     D  FN+LHG
Sbjct: 9   VAVLLGGWSAEREISLISGGEVLKALQAAGVDAHGIDAGRDVLEVLKAGGFDRVFNMLHG 68

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG++Q  LEL+ +P T SG+L SA+SMDK+ +K++    G+P  P   V     D 
Sbjct: 69  RGGEDGVIQGALELIGLPCTGSGVLGSAVSMDKLMTKRLWRGAGLP-TPDYQVLDGDTDW 127

Query: 121 QHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
             + S    P ++KP   GSS+G+  ++    +P    ++++   G  +  E++V G E 
Sbjct: 128 VVVASGLGLPLIVKPALEGSSIGMSKVETVGDLPEAYARAAA--CGGPVFAERWVTGTEY 185

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           T  ++    L +  +  P++ FY YE KY +  + + +P  +   + +  Q LA  A +A
Sbjct: 186 TAAILEGEPLPLIRLETPRA-FYDYEAKYKAETTRYHVPCGLEAAVEQRFQSLALQAFEA 244

Query: 238 IGCRGISRSDFLFDPLSRKVFWL-EINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +G RG  R D + D +   V WL E+N  PGMT  S+ P  A  AG  F+ L+L
Sbjct: 245 VGARGWGRVDLMVDRVG--VPWLIEVNTVPGMTDHSLVPMAARAAGLDFQALVL 296


>gi|2738587|gb|AAC46067.1| D-alanine: D-alanine ligase [Buchnera aphidicola]
          Length = 306

 Score =  164 bits (415), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 104/303 (34%), Positives = 165/303 (54%), Gaps = 21/303 (6%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GGI SER++S+ SG A   +L  +GF    ID      + L     D A+  LHG
Sbjct: 5   IAVLLGGILSERKISIKSGYAILQSLLRSGFNAYAIDTRDFPIMQLKKQGFDSAYIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR----- 115
             GEDG +Q ILE L IPYT SGI++SA+S+DK R+K +  S  + V P I + +     
Sbjct: 65  TGGEDGSIQGILEYLNIPYTGSGIMSSAISLDKWRTKLLWKSLSLRVLPDIYLQKKDISK 124

Query: 116 ----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS---SWNHGDQLLI 168
               + +     +  P VIKP   GSS+GI ++        DLL  S   ++N+ + ++I
Sbjct: 125 YTYSYILKKILKLKFPVVIKPNNAGSSIGITIVNHP-----DLLIDSINLAFNYSNNIII 179

Query: 169 EQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           E+++ G E T  ++    L   +I + K++FY Y  KY   ++ ++ P+ +     +E++
Sbjct: 180 EKFLKGTEYTVSILNKKVLPPIKI-ITKNNFYDYSSKYIESSTEYICPSGLNYQKEEELK 238

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRE 287
           ++  +A  ++GC+G  R D + D  ++  FW LEIN  PGMT  S+ P  +     SF  
Sbjct: 239 KIVEIAWNSLGCKGCGRIDAILD--NKDKFWLLEINTIPGMTHRSLVPMASKKYRISFVN 296

Query: 288 LLL 290
           L+L
Sbjct: 297 LIL 299


>gi|238784567|ref|ZP_04628574.1| D-alanine--D-alanine ligase [Yersinia bercovieri ATCC 43970]
 gi|238714533|gb|EEQ06538.1| D-alanine--D-alanine ligase [Yersinia bercovieri ATCC 43970]
          Length = 289

 Score =  164 bits (415), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 103/285 (36%), Positives = 153/285 (53%), Gaps = 13/285 (4%)

Query: 14  VSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILE 73
           +SL SG+A  + L +AG     ID        L     D  F  LHG  GEDG +Q +LE
Sbjct: 1   MSLLSGQAVLAGLREAGIDAHGIDTKEFPVTQLKAQGFDKVFIALHGRGGEDGTLQGVLE 60

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---FTMDSQHL------I 124
            L +PYT SG++ASAL+MDK+R+K V  +  +P+ P + +NR    T+ S+ L      +
Sbjct: 61  FLGLPYTGSGVMASALTMDKLRTKLVWQALDLPISPYVALNRQQFETLSSEELAARVAKL 120

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
             P ++KP   GSS+G+   K D +  L      ++ H   +LIE+++ G E T G++GD
Sbjct: 121 GLPLIVKPSHEGSSVGM--SKVDHANELQGALVEAFRHDTDVLIEKWLSGPEFTVGILGD 178

Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244
             L    I VP   FY YE KY S  + +  P+ +  ++ +++  LA  A+QA+GC G  
Sbjct: 179 DVLPSIRIQVPGV-FYDYEAKYLSDETQYFCPSGLSTELEQQLAALALRAYQALGCSGWG 237

Query: 245 RSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           R D + D      + LE+N  PGMT  S+ P  A   G SF +L+
Sbjct: 238 RVDVMQDS-DGNFYLLEVNTSPGMTSHSLVPMAARQHGLSFSQLV 281


>gi|167614192|gb|ABZ89697.1| D-alanine--D-alanine ligase [Buchnera aphidicola]
          Length = 310

 Score =  164 bits (415), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 110/307 (35%), Positives = 170/307 (55%), Gaps = 29/307 (9%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+ER++S+SSG A   +L  +G K    D      + L   K D A+  LHG
Sbjct: 5   VAVLLGGNSTERKISISSGHAVLKSLMRSGIKAYPFDTRDFPIMQLKKQKFDTAYIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR----- 115
             GEDG +Q +LE L+IPYT SGI+AS++S+DK R+K +  S G+PV P + + +     
Sbjct: 65  KGGEDGSIQGVLEYLKIPYTGSGIMASSISLDKKRTKLLWKSAGLPVLPDVYIQKKDILK 124

Query: 116 ----------FTMDSQHLISPPYVIKPLKGGSSLGI-IVIKKDQSIPLDLLQSSSWNHGD 164
                     F +D       P ++KP   GSS+GI +V  K+Q   L      ++N+ +
Sbjct: 125 NLSSLLKKRFFKLDF------PLLVKPNNQGSSIGITLVYLKNQ---LKNAIEVAFNYSN 175

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
            +L+EQ++ G E T  ++ +  L   +I + K++FY +  KY   ++ ++ P+ + L   
Sbjct: 176 TILVEQFIKGTEYTVSILDEKILPSIQI-ITKNNFYDFASKYQLSSTQYLCPSGLNLKQE 234

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGY 283
           K+++++A  A   +GC G  R D + D  S   FW LEIN  PGMT  S+ P  A   G 
Sbjct: 235 KKLKKIAKKAWDTLGCNGCGRIDVILD--SNNKFWLLEINTIPGMTNRSLLPISANAIGM 292

Query: 284 SFRELLL 290
           SF EL+L
Sbjct: 293 SFDELVL 299


>gi|169342530|ref|ZP_02863584.1| D-alanine--D-alanine ligase [Clostridium perfringens C str.
           JGS1495]
 gi|169299302|gb|EDS81369.1| D-alanine--D-alanine ligase [Clostridium perfringens C str.
           JGS1495]
          Length = 302

 Score =  164 bits (415), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 96/297 (32%), Positives = 166/297 (55%), Gaps = 8/297 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + ++MGGISSEREVSL+SG++  + ++   ++V +I ++    ++      D A   LHG
Sbjct: 3   VGIIMGGISSEREVSLASGESIFNHIDKEKYEVIKIIINNKRDILEKVKGLDFALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF-TMD 119
            FGEDG VQA L++++IPY+  G L+S+L MDK  SK+V+ +  +     I V     +D
Sbjct: 63  KFGEDGTVQAFLDIMDIPYSGCGALSSSLCMDKNLSKKVLKAENIRTAKWITVKSIEEID 122

Query: 120 SQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            + +  I  P  +KP  GGSS+    + K + I   +++   ++  ++++IE +V G E+
Sbjct: 123 YEKIEEIGYPVFVKPNNGGSSVATFKVYKKEDIKDAVMEGLKYD--EEVIIESFVKGREI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC +       + EI   K+DFY Y+ KY++  + H LP ++   +Y EV+ +A    + 
Sbjct: 181 TCPIFNGELFPILEIK-SKADFYDYKQKYAANGAEH-LPVQLEKSLYDEVKEMALKTFEV 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           + C   +R D +        + LE+N  PGMT  S+FP+ A   G S+ + +  ++E
Sbjct: 239 LKCEVYARVDMIISEEGVP-YILEVNTLPGMTATSLFPQSAESIGISYSKFIDLIIE 294


>gi|109899818|ref|YP_663073.1| D-alanine--D-alanine ligase [Pseudoalteromonas atlantica T6c]
 gi|122971621|sp|Q15Q19|DDL_PSEA6 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|109702099|gb|ABG42019.1| D-alanine--D-alanine ligase [Pseudoalteromonas atlantica T6c]
          Length = 318

 Score =  164 bits (415), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 106/302 (35%), Positives = 161/302 (53%), Gaps = 10/302 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AV+ GG S+EREVSL SG+A  SAL  AG      D   S    L   K D    +LHG
Sbjct: 20  VAVMFGGRSAEREVSLRSGQAVLSALISAGVNAHGFDPAESELHQLVEQKFDRVLIMLHG 79

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q  L+ + +PYT +G+L SAL MDK+RSKQV  S G+P     + ++   ++
Sbjct: 80  RGGEDGSLQGALQQMNMPYTGTGVLGSALCMDKIRSKQVWQSLGLPTANYEIADKRDFNA 139

Query: 121 QHL------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
            +       +    ++KP + GSS+G+   K   +  L      ++ + D++L+EQ++ G
Sbjct: 140 ANCSDIMSRLGDLVMVKPAQEGSSIGM--AKVSNAQQLAAAIQQAFEYDDKVLLEQFIQG 197

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
            E T  ++   ++    ++ P+ DFY YE KY S  + +  P+ +P +    + RLA  A
Sbjct: 198 SEYTVSLLNGEAMPSISMSTPR-DFYDYEAKYQSNTTEYFCPSGLPAEQEGLLARLALDA 256

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             A+   G  R DF+ D L  + + LE N  PGMT  S+ P  A  AG SF +L L ++ 
Sbjct: 257 FDAVAGSGWGRVDFMQDMLG-QFYLLEANTVPGMTEKSLVPLAAKQAGLSFEQLSLAVLA 315

Query: 295 DA 296
            A
Sbjct: 316 TA 317


>gi|307731070|ref|YP_003908294.1| D-alanine/D-alanine ligase [Burkholderia sp. CCGE1003]
 gi|307585605|gb|ADN59003.1| D-alanine/D-alanine ligase [Burkholderia sp. CCGE1003]
          Length = 317

 Score =  164 bits (414), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 105/303 (34%), Positives = 165/303 (54%), Gaps = 17/303 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD---LAFNV 57
           +AVL+GG S+EREVSL+SG+     L DAG      D        LA LK +    AFN 
Sbjct: 16  VAVLLGGNSAEREVSLNSGRLVLQGLRDAGVDAHPFDPSERP---LAALKEEGFVRAFNA 72

Query: 58  LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR-- 115
           LHG +GE+G +Q  L+   I YT SG+L SAL +DK R+K V    G+P  P   V R  
Sbjct: 73  LHGGYGENGQIQGALDFYGIKYTGSGVLGSALGLDKFRTKLVWQQLGIPTPPFEAVMRGD 132

Query: 116 -FTMDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
            +   ++ +++    P  +KP   GSS+ +I +K   ++P  L+++  ++    +++E+ 
Sbjct: 133 DYEARAKDIVAKLGLPLFVKPASEGSSVAVIKVKSADALPAALVEAVKYDR--IVVVEKS 190

Query: 172 VD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
           ++ G E T  + GD  L V  I VP  +FY Y  KY + ++ +++P  +  D    ++ L
Sbjct: 191 IEGGGEYTACIAGDLDLPVIRI-VPAGEFYDYHAKYIANDTQYLIPCGLTPDEEARMKVL 249

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A  A   +GC    R+DF+ D      F LE+N  PGMT  S+ P+ A   G S++EL++
Sbjct: 250 ARRAFDVLGCTDWGRADFMLDADGNPYF-LEVNTAPGMTDHSLPPKAARAVGISYQELVV 308

Query: 291 WMV 293
            ++
Sbjct: 309 GVL 311


>gi|149196275|ref|ZP_01873330.1| D-alanylalanine synthetase [Lentisphaera araneosa HTCC2155]
 gi|149140536|gb|EDM28934.1| D-alanylalanine synthetase [Lentisphaera araneosa HTCC2155]
          Length = 1029

 Score =  164 bits (414), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 103/302 (34%), Positives = 167/302 (55%), Gaps = 13/302 (4%)

Query: 1    MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-DRSVGLVLAHLKPDLAFNVLH 59
            +AVL GG SSER +SL S +A A AL D G +V++ID+ D S+  +   +  DL F VLH
Sbjct: 732  IAVLKGGPSSERPISLQSAEAVAKALRDGGHEVTEIDITDFSLPAISKDI--DLVFPVLH 789

Query: 60   GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
            G FGEDG VQ ++E    PY    I +S L +DK  +   + + G+PVC S+++     +
Sbjct: 790  GEFGEDGQVQKLIEGQGFPYVGCDITSSELCIDKDAAVCELRNSGLPVCDSVVLRSKDEE 849

Query: 120  SQHLISPPYVIKPLKGGSSLGIIVIKKDQSI--PLDLLQSSSWNHGDQLLIEQYVDGIEL 177
                I+ P V+KP + GSS+ + +++K+  +   +DL    ++ + D +L+E +  GIE 
Sbjct: 850  ISQNITLPCVVKPNRQGSSISLSLVEKEGDLRKAIDL----AFENDDTVLVESFFKGIEC 905

Query: 178  TCGVMGDASLDVTEIAVPKSDFYSYELKYS---SLNSTHVLPAKIPLDIYKEVQRLAFLA 234
            T G++   +L V EI +P   F+ Y+ KY+        +  P +IP D+ + +++    +
Sbjct: 906  TVGLIDGKALSVVEI-IPPEGFFDYDAKYTYSKGKTQYNCPPKEIPEDVSERLKKCGEES 964

Query: 235  HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             + +  R + R D +++P S K   LE N  PG T  S+ P+ A   G SF EL   + +
Sbjct: 965  FKVLKGRHLMRVDMIWNPDSDKFIILEANTMPGFTSSSLLPKAAKRDGISFTELCCGLAK 1024

Query: 295  DA 296
             A
Sbjct: 1025 KA 1026


>gi|299768393|ref|YP_003730419.1| D-alanine--D-alanine ligase [Acinetobacter sp. DR1]
 gi|298698481|gb|ADI89046.1| D-alanine--D-alanine ligase [Acinetobacter sp. DR1]
          Length = 308

 Score =  164 bits (414), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 106/300 (35%), Positives = 162/300 (54%), Gaps = 14/300 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-VDRSVGLVLAHLKPDLAFNVLH 59
           +AVL GG S+ER VSL SG+A   AL  +G +    D  DRSV  ++ +   D AF VLH
Sbjct: 10  VAVLFGGKSAERAVSLDSGQAVLDALLRSGVQAEAFDPQDRSVTELVNY---DRAFIVLH 66

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G  GEDG +Q +LE L +PYT +G+  SA+ MDK+++KQ+     +P  P  ++ + T D
Sbjct: 67  GRGGEDGQIQGVLEWLNLPYTGTGVQGSAIGMDKVKTKQIWQGSDLPTAPYRIITKET-D 125

Query: 120 SQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
              +I+    P +IKP+  GSS+G+  ++K +     + +++   H   ++ E+++ G E
Sbjct: 126 LDAVIAELGLPVIIKPVHEGSSVGMSKVEKAEDFAAAIEKAT--QHDAVVMAEKWITGRE 183

Query: 177 LTCGVMGDASLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
            T   +    L V  +  P    FY YE KY   +  + +P  +     K +Q L   A 
Sbjct: 184 FTISFLNGQPLPVIRLQPPADVAFYDYEAKYQRNDVEYGIPCGLSETEEKNLQALCLRAF 243

Query: 236 QAIGCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           QA+G     R D + D   +  FW LE+N  PGMT  S+ P+ A   GYSF EL + ++E
Sbjct: 244 QAVGAESWGRIDAMQD--EQGNFWLLEVNTVPGMTSHSLVPKAAKAVGYSFDELCVAILE 301


>gi|303249381|ref|ZP_07335607.1| D-alanine/D-alanine ligase [Desulfovibrio fructosovorans JJ]
 gi|302489219|gb|EFL49184.1| D-alanine/D-alanine ligase [Desulfovibrio fructosovorans JJ]
          Length = 306

 Score =  164 bits (414), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 111/299 (37%), Positives = 155/299 (51%), Gaps = 8/299 (2%)

Query: 1   MAVLM--GGISSEREVSLSSGKACASALEDAGFKVSQIDV-DRSVGLVLAHLKPDLAFNV 57
           M VL+  GG SSEREVSLS       AL+  G +V   D+ D   G V A    D AF  
Sbjct: 1   MKVLLVAGGWSSEREVSLSGAVQIGKALKSLGHEVVPCDLSDDFPGFVAAARICDFAFLN 60

Query: 58  LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-SILVNRF 116
           LHG  GEDGL QA+L+   +PY  +G   S L+++K  SKQ+  S G+P      L    
Sbjct: 61  LHGAPGEDGLPQALLDAAGVPYQGAGPAGSFLALNKAASKQLFISHGLPTPRWDFLPTPP 120

Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGI 175
                    PP+ +KP  GGSS+ + +++    +P  L     +  GD  LIE+ +  G+
Sbjct: 121 PAGYAPAFPPPWFVKPNSGGSSVYMSLVRDPAELPAAL--EKIFATGDAALIEEGLCGGM 178

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
           ELTC V+GD +L    I     +F+ Y  KY    +  + PA IP  +  E+ RL+  AH
Sbjct: 179 ELTCAVLGDEALPPILIRPKAGEFFDYASKYQPEAADEICPAPIPRALTDELGRLSLAAH 238

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            A+G  G SR+DF+       +  LE+N  PGMTP S+ P  A  AG  F +L+  ++E
Sbjct: 239 AALGLTGYSRADFIHTD-KHGLMLLEVNTLPGMTPTSLLPRSARAAGLDFPQLIAKLME 296


>gi|257092206|ref|YP_003165847.1| D-alanine--D-alanine ligase [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
 gi|257044730|gb|ACV33918.1| D-alanine/D-alanine ligase [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
          Length = 308

 Score =  164 bits (414), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 104/297 (35%), Positives = 163/297 (54%), Gaps = 13/297 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-VDRSVGLVLAHLKPDLAFNVLH 59
           +AVL GG S+EREVSL+SG    +AL   G      D  +R +  +    +   AF  LH
Sbjct: 9   VAVLFGGRSAEREVSLNSGSRVLAALRRQGVDAHAFDPAERQLDDLAGFAR---AFIALH 65

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT-- 117
           G +GEDG +Q  LEL+ IPYT SG++ASAL MDK R+K +  + G+PV P ++++  T  
Sbjct: 66  GRYGEDGTIQGALELMGIPYTGSGVMASALGMDKWRTKLLWQAAGLPVPPYLMLDDATDL 125

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
              +  +  P  +KP   GSS+GI  +K+     L   ++ +  H   ++ E+ + G E 
Sbjct: 126 AAVEAALGLPLFVKPACEGSSIGITKVKRPGE--LAAARAEAARHDSLVIAERAILGGEY 183

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           T  ++G+A+L + +I  P ++FY YE KY   ++ +  P  +      E+++ A  A + 
Sbjct: 184 TVAILGNAALPIIKIE-PSNEFYDYEAKYLRDDTAYRCPCGLTETRESELRQQALDAFRV 242

Query: 238 IGCRGISRSDFLFDP----LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +G RG  R DFL D          ++LE+N  PGMT  S+ P  A  AG S+ +L++
Sbjct: 243 LGGRGWGRVDFLLDQAAAAGGGAAYFLEVNTSPGMTDHSLVPMAARAAGMSYDDLVV 299


>gi|171057215|ref|YP_001789564.1| D-alanine--D-alanine ligase [Leptothrix cholodnii SP-6]
 gi|170774660|gb|ACB32799.1| D-alanine--D-alanine ligase [Leptothrix cholodnii SP-6]
          Length = 329

 Score =  164 bits (414), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 99/295 (33%), Positives = 161/295 (54%), Gaps = 13/295 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG S+ERE+SL SG     AL   G      D        L H      F  LHG
Sbjct: 12  VAVLMGGSSAEREISLMSGAGVLQALLSQGVDAHAFDPAERELAELKHEGYARCFIALHG 71

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG VQ  LELL IPYT SG++ASA++MDK+ +K++  + G+P    + +      +
Sbjct: 72  RHGEDGTVQGALELLGIPYTGSGVMASAIAMDKVMTKRIWLAEGLPTPRYVWLASDDQGA 131

Query: 121 QHL------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
           + +      +  P ++KP + GSS+G+  + +   +   +  S+ ++    +L E +++G
Sbjct: 132 ERVGRVSAELGLPLIVKPPREGSSIGVTKVVEAAQVGAAVALSAGYDA--DVLCEAFIEG 189

Query: 175 IELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            ELTC V+G+     +L V  I VP +  Y Y+ KY +    ++ P+ +  ++ +E+QR+
Sbjct: 190 EELTCPVLGEGAHAVALPVIRI-VPPAAGYDYQNKYFTDEVQYLCPSGLSAELEREIQRI 248

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285
              +++A+GCRG  R+D +     ++ F LE+N  PGMT  S+ P  A  +G S+
Sbjct: 249 TLASYRALGCRGWGRADLMLRAGDQQPFLLEMNTSPGMTGHSLVPMSARASGISY 303


>gi|157364709|ref|YP_001471476.1| D-alanyl-alanine synthetase A [Thermotoga lettingae TMO]
 gi|167012332|sp|A8F8C8|DDL_THELT RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|157315313|gb|ABV34412.1| D-alanine--D-alanine ligase [Thermotoga lettingae TMO]
          Length = 296

 Score =  164 bits (414), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 110/305 (36%), Positives = 168/305 (55%), Gaps = 22/305 (7%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP-DLAFNVLH 59
           +AVL+GGIS ER +SL SG+    AL+  G  V  IDVD +   +   LK  ++ FN LH
Sbjct: 3   IAVLLGGISRERPISLKSGENVLKALKKLGHDVVPIDVDENFLEIAPKLKEFEVVFNALH 62

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G+FGEDG VQAIL+ + + YT S +LASA+  DK+ + +V+          +    +T+ 
Sbjct: 63  GHFGEDGTVQAILDWVGVSYTGSKVLASAICFDKVMTYRVLDG-------YVNFPEYTIV 115

Query: 120 SQHLISPPY----VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175
            + +   PY    VIKP K GSS+G+ +      +  DL  S      ++++I++Y++G 
Sbjct: 116 KKPVKESPYGFPCVIKPRKEGSSIGVHICDNSNQLYNDL--SEELKKYNEMMIQRYIEGR 173

Query: 176 ELTCGVMGDAS---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
           ELT  ++       L V E+  PK  FY Y  KY S  +  +LPA + ++ Y++V   + 
Sbjct: 174 ELTVSILEIGKPQILPVLELK-PKRRFYDYTAKYVSGMTEFILPAPLSVEEYQKVANSSL 232

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
            A +  GC G +R D +   L   VF+ LE+N  PG+T +S  P  A  AG SF EL+  
Sbjct: 233 RAFELCGCEGFARVDGI---LKDNVFYVLELNTIPGLTDLSDMPASAKAAGMSFEELVDA 289

Query: 292 MVEDA 296
           +++ A
Sbjct: 290 IIQTA 294


>gi|315125605|ref|YP_004067608.1| D-alanine-D-alanine ligase B, affects cell division
           [Pseudoalteromonas sp. SM9913]
 gi|315014118|gb|ADT67456.1| D-alanine-D-alanine ligase B, affects cell division
           [Pseudoalteromonas sp. SM9913]
          Length = 306

 Score =  164 bits (414), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 103/297 (34%), Positives = 159/297 (53%), Gaps = 7/297 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+ER+VSL SG+A  +AL D G      D        L  L  D  F  LHG
Sbjct: 11  VAVLLGGNSAERDVSLKSGQAVLNALLDVGIDAIAFDPQNRSLWELKSLYVDRVFIALHG 70

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN-RFTMD 119
             GEDG VQ  LE + +PYT S +L SAL+MDK+R K +  S G+   P  +V+ +   D
Sbjct: 71  RGGEDGTVQGALEFMNLPYTGSNVLGSALAMDKIRCKHLFKSAGLSTAPYAVVDAKKGFD 130

Query: 120 SQHLIS--PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
           +  +++     ++KP   GSS+G+      + +   L  ++++    Q+L+EQ++ G E 
Sbjct: 131 ANAIMAQFKKVMVKPSHEGSSIGMAQASSAEELEDAL--TNAFKFDSQVLVEQWITGREF 188

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           T  V+GD    V E++ P   FY Y+ KY S ++ +  PA +     +++Q +A  A   
Sbjct: 189 TITVLGDEVQPVIEMSTPNG-FYDYQAKYQSSSTQYHCPADLSPSDTQKLQAMALDAFDL 247

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           +G  G  R D + D      + LE+N  PGMT  S+ P  A   G SF +L++ ++E
Sbjct: 248 VGASGWGRVDAMQDEQGH-FYLLEVNTVPGMTEKSLVPMAAKANGASFEQLVVRILE 303


>gi|226229301|ref|YP_002763407.1| D-alanine--D-alanine ligase [Gemmatimonas aurantiaca T-27]
 gi|226092492|dbj|BAH40937.1| D-alanine--D-alanine ligase [Gemmatimonas aurantiaca T-27]
          Length = 344

 Score =  163 bits (413), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 120/343 (34%), Positives = 180/343 (52%), Gaps = 48/343 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID---------VDRSV--------- 42
           + VL+GG+S+ER+VSLSSG   A AL + G +V  +D          +RS+         
Sbjct: 7   ITVLLGGVSAERDVSLSSGLRIAMALREKGHEVICLDPAEGVLTRETERSLLASGVGSAP 66

Query: 43  -------GLVLAHLKP-----------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84
                  GL    L P           D  F  LHG  GEDG +QA+L+++ +PYT SG 
Sbjct: 67  PSLEALAGLESRALSPVLGTLPELTEADCLFLALHGGQGEDGTIQALLDMVGVPYTGSGH 126

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILV----NRFTMDSQHL---ISPPYVIKPLKGGS 137
           LASAL+MDK  SK V+ S GV     I+     +  T+D+  +   +  P V+KP K GS
Sbjct: 127 LASALAMDKHLSKVVLRSAGVATANWIMAPAPDSAETLDADDVGRHLDWPVVVKPSKQGS 186

Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKS 197
           ++G+ +++  + +   + +  ++ + D+++IE++V G ELT G++GDA L   EI  P  
Sbjct: 187 TVGLSIVRAPEELAAAVRE--AFRYDDEVMIERFVPGRELTVGILGDAVLPTIEIQ-PVK 243

Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
           + Y YE KY+   +   +    P +  K   + A  A QA+  RG +R DF  DP  +  
Sbjct: 244 ELYDYECKYTPGMAKEFVAELSPEEASKLADQ-AKRAFQALKLRGYARIDFRLDPQGQP- 301

Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           + LE N  PGMTP S+ P+ AA AG  F +L   +V+ A   R
Sbjct: 302 WCLEANTLPGMTPTSLIPQAAAAAGVLFPDLCERIVQLALAKR 344


>gi|291288101|ref|YP_003504917.1| D-alanine/D-alanine ligase [Denitrovibrio acetiphilus DSM 12809]
 gi|290885261|gb|ADD68961.1| D-alanine/D-alanine ligase [Denitrovibrio acetiphilus DSM 12809]
          Length = 298

 Score =  163 bits (413), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 99/293 (33%), Positives = 160/293 (54%), Gaps = 8/293 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG+S+EREVSL SG+A   +L   G+K   ID+DR V   ++    D+ F  LHG
Sbjct: 6   VAVLYGGMSAEREVSLRSGQAAYDSLVRLGYKTVLIDMDRDVAQKISEAGADVCFIALHG 65

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG VQ +L+++ +PYT S   A+ ++ DK+ SK+     GV     I +N      
Sbjct: 66  TYGEDGRVQGMLDIIGMPYTGSSYQANMVAFDKLLSKERFIKGGVTTPDYIELN---APK 122

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           + +     VIKP + GSS+GI +++ ++     L    ++ +  ++++E+ + G+ELT  
Sbjct: 123 KGMPFECCVIKPARQGSSVGIHIVQNEEEYFSKL--EDAFKYDSKVIVEECIKGVELTVS 180

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           ++   +L V  I  PK   Y YE KY+   + +V    +     + V+  A  A   +GC
Sbjct: 181 ILDGETLPVICIR-PKKGVYDYESKYTKGMTEYVFDTGLSASETECVENAAMKAFDVLGC 239

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            G  R+D ++D   R  + LE+N  PGMT  S+ P+ A  AG SF  ++  M+
Sbjct: 240 SGYGRADIMYD--GRTPYVLEVNTLPGMTETSLLPKAANKAGMSFDNMVEKML 290


>gi|238761558|ref|ZP_04622533.1| D-alanine--D-alanine ligase [Yersinia kristensenii ATCC 33638]
 gi|238700072|gb|EEP92814.1| D-alanine--D-alanine ligase [Yersinia kristensenii ATCC 33638]
          Length = 289

 Score =  163 bits (413), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 98/285 (34%), Positives = 155/285 (54%), Gaps = 13/285 (4%)

Query: 14  VSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILE 73
           +SL SG+A  + L +AG     +D        L     D  F  LHG  GEDG +Q +LE
Sbjct: 1   MSLLSGQAVLAGLREAGIDAHGVDTKDFPVTQLKEQGFDKVFIALHGRGGEDGTLQGVLE 60

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---FTMDSQHL------I 124
            L++PYT SG++ASAL+MDK+R+K V  + G+P+ P + +NR    T+ S+ L      +
Sbjct: 61  FLQLPYTGSGVMASALTMDKLRTKLVWQASGLPISPYVALNRQQFETLSSEELAACVAKL 120

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
             P ++KP   GSS+G+  + +   +   L++  ++ H   +LIE+++ G E T  ++G+
Sbjct: 121 GLPLIVKPSHEGSSVGMSKVDRASELHAALVE--AFRHDTDVLIEKWLSGPEFTVAILGE 178

Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244
             L    I  P   FY YE KY S  + +  P+ +  ++ +++  LA  A+QA+GC G  
Sbjct: 179 DVLPSIRIQAPGV-FYDYEAKYLSDETQYFCPSGLSAELEQQLAELALQAYQALGCSGWG 237

Query: 245 RSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           R D + D      + LE+N  PGMT  S+ P  A   G SF +L+
Sbjct: 238 RVDVMQDS-DGGFYLLEVNTSPGMTSHSLVPMAARQYGLSFSQLV 281


>gi|28210407|ref|NP_781351.1| D-alanine--D-alanine ligase [Clostridium tetani E88]
 gi|39931117|sp|Q897P8|DDLA_CLOTE RecName: Full=D-alanine--D-alanine ligase A; AltName:
           Full=D-Ala-D-Ala ligase A; AltName: Full=D-alanylalanine
           synthetase A
 gi|28202844|gb|AAO35288.1| D-alanine--D-alanine ligase [Clostridium tetani E88]
          Length = 301

 Score =  163 bits (413), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 97/297 (32%), Positives = 171/297 (57%), Gaps = 9/297 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGG+S+E+E+S  +GK     L+ + +++  I ++    L+      + AF  LHG
Sbjct: 3   IGVVMGGVSTEKEISNLTGKYIIENLDKSKYEILPIPINTKFELIDKIKCLEFAFIALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---FT 117
           NFGEDG VQA+LE + +PY+ SG+LAS+L MDK  SK+++   G+     I++ +     
Sbjct: 63  NFGEDGKVQALLETMGVPYSGSGVLASSLCMDKNMSKKILQGEGIKTPRWIMLYKNEDID 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            +S   I  P V+KP  GGSS+GI ++KK+Q +   +    ++   +++LIE+Y+ G E+
Sbjct: 123 FESIKNIGYPLVVKPNSGGSSIGITIVKKEQELIKAI--EEAFKFDEEILIEEYIKGEEI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC ++    L +  I   K +F++Y+ KY    +   + A + L++  +V++++    ++
Sbjct: 181 TCCMLDGKPLPILSIKT-KEEFFNYKAKYFEGVAEEKV-ADLSLELKDQVEKISNKCWKS 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
              +   R D +      +V+ +EIN  PGMT  S+FP+ A   G +F ELL  ++E
Sbjct: 239 FKLKVYGRIDMIIK--GNEVYVIEINTLPGMTKYSLFPKSAKAYGLNFSELLDKIIE 293


>gi|320335437|ref|YP_004172148.1| D-alanine--D-alanine ligase [Deinococcus maricopensis DSM 21211]
 gi|319756726|gb|ADV68483.1| D-alanine--D-alanine ligase [Deinococcus maricopensis DSM 21211]
          Length = 343

 Score =  163 bits (413), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 106/335 (31%), Positives = 173/335 (51%), Gaps = 39/335 (11%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQI------------DVDRSVGLVLAHLK 50
           +L GG S E EVSLSS +   +AL    F+V+ +            D  R++   +A   
Sbjct: 11  LLAGGQSGEHEVSLSSARGVLAALPKDRFEVTPLVISKEGRWLPPADTTRALEAGVAETG 70

Query: 51  PDL-------------AFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSK 97
            DL              F +LHG  GEDG VQ +L L  IP+  SG+L SA SMDK  +K
Sbjct: 71  GDLMLRGVADAASFDVVFPLLHGPNGEDGTVQGLLTLAGIPFVGSGVLGSAASMDKAMTK 130

Query: 98  QVVSSCGVPVCPSILVNRF--------TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS 149
           QV+++ G+P  P  L+ R          + +   +  P  +KP   GSS+GI  ++ +  
Sbjct: 131 QVLAAHGIPQVPWRLLTRAQVRRDPAAALTAARELGFPLFVKPANMGSSVGISKVRGEDE 190

Query: 150 IPLDLLQSSSWNHGDQLLIEQYVDGI--ELTCGVMGDASLDVTEIAVPK--SDFYSYELK 205
             LD     ++ H  ++++E    G   EL  G++G+ +   + +   +  +DFY YE K
Sbjct: 191 --LDGALREAFAHDRRVVLEAMTQGKPRELEVGILGNDAPMASPVGELRFDADFYDYETK 248

Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           Y+   +T  +PA +P  + ++V+  A  A +A+ C G++R DF ++  + +V+  E+N  
Sbjct: 249 YTEGRATMHIPADVPHAVAEQVRTYALAAFRALDCAGLARIDFFYEAATGQVYLNEVNTM 308

Query: 266 PGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           PG TP S++P + A AG S+ +L+  +VE A+  R
Sbjct: 309 PGFTPTSMYPNLWAAAGLSYADLVTRLVELATEDR 343


>gi|303258234|ref|ZP_07344241.1| D-alanine--D-alanine ligase B [Burkholderiales bacterium 1_1_47]
 gi|302858987|gb|EFL82071.1| D-alanine--D-alanine ligase B [Burkholderiales bacterium 1_1_47]
          Length = 313

 Score =  163 bits (413), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 116/304 (38%), Positives = 163/304 (53%), Gaps = 12/304 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AV+MGG S EREVSL SG     AL+  G  V + D        LA +  D AF +LHG
Sbjct: 12  IAVVMGGSSGEREVSLMSGSGVLKALQSVGADVVKFDPAEQPLSDLAGI--DRAFLILHG 69

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119
             GEDG++Q ++E L+IPYT SG+ ASA+ +DK  +K V  + G+PV P  +V R   D 
Sbjct: 70  KGGEDGVIQGVMEFLKIPYTGSGVQASAIGIDKEMTKAVWEAQGIPV-PRGMVLRNETDC 128

Query: 120 --SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
             +    +   VIKP K GSSLG+  +K      +    + S   G  +L E+YV G EL
Sbjct: 129 EEAHRRFNGNLVIKPSKEGSSLGLYKLKNATVDQVKEAFAKSQEAGMTVLAEEYVFGREL 188

Query: 178 TCGV--MGDA--SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           T  V  MG+   +  + EI  P  D Y +E KY S  + +V PA++P ++ ++++ +   
Sbjct: 189 TVAVLDMGEGLKAFPIIEIKAPDGD-YDFEHKYFSDETVYVCPAEVPENVTEKIKAVVEK 247

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           A  A+G    SR D +       V  LEIN  PGMTP S+ P  A   G S+ EL+  + 
Sbjct: 248 AALAVGADAWSRIDVILRDDGSFVL-LEINTAPGMTPHSLVPLAARTCGISYEELVKQVA 306

Query: 294 EDAS 297
             AS
Sbjct: 307 ARAS 310


>gi|78065123|ref|YP_367892.1| D-alanine--D-alanine ligase [Burkholderia sp. 383]
 gi|77965868|gb|ABB07248.1| D-alanine--D-alanine ligase [Burkholderia sp. 383]
          Length = 313

 Score =  163 bits (413), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 111/301 (36%), Positives = 164/301 (54%), Gaps = 19/301 (6%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-VDRSVGLVLAHLKPD---LAFN 56
           +AVL GG SSEREVSL+SGK     L DAG      D  +R     LA LK +    AFN
Sbjct: 12  VAVLFGGESSEREVSLTSGKLVLQGLRDAGIDAHPFDPAERP----LAALKDEGFVRAFN 67

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR- 115
            LHG +GE+G +Q  L+   I YT SG+L SAL +DK R+K V    GVP  P   V R 
Sbjct: 68  ALHGGYGENGQIQGALDFYGIRYTGSGVLGSALGLDKFRTKLVWQQTGVPTPPFETVLRG 127

Query: 116 -----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                   D    +  P  +KP   GSS+ ++ +K   ++P  L ++++  H   +++E+
Sbjct: 128 DDLAARATDIVAKLGLPLFVKPASEGSSVAVLKVKTADALPAALAEAAT--HDPIVIVEK 185

Query: 171 YVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
            ++ G E T  + GD  L V +I VP  +FY Y  KY + ++ +++P  +P D   E++R
Sbjct: 186 SIEGGGEYTACIAGDLDLPVIKI-VPAGEFYDYHAKYIADDTQYLIPCGLPADKEAELKR 244

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           +A  A   +GC    R+DF+ D      ++LE+N  PGMT  S+ P+ A   G S+ EL+
Sbjct: 245 VARRAFDVLGCTDWGRADFMLD-ADGNAYFLEVNTAPGMTDHSLPPKAARAVGISYSELV 303

Query: 290 L 290
           +
Sbjct: 304 V 304


>gi|73542661|ref|YP_297181.1| D-alanine--D-alanine ligase [Ralstonia eutropha JMP134]
 gi|123624027|sp|Q46WZ6|DDL_RALEJ RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|72120074|gb|AAZ62337.1| D-alanine--D-alanine ligase [Ralstonia eutropha JMP134]
          Length = 327

 Score =  163 bits (413), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 103/309 (33%), Positives = 170/309 (55%), Gaps = 22/309 (7%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VL GG S+ERE+SL SG    +AL+  G      D        LA    D  F  LHG
Sbjct: 17  VGVLYGGRSAEREISLMSGSGVLAALQSRGVDAHGFDPATQSVAELAAAGFDRVFIALHG 76

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118
            +GEDG +Q +LE L +PYT SG+LASAL+MDK  +K++       +   +   RF M  
Sbjct: 77  RYGEDGTMQGLLEQLGVPYTGSGVLASALAMDKQATKRLW------MTHDLSTPRFAMLY 130

Query: 119 ---DSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
              D   +++    P ++KP + GSS+G+  +     +     ++++ +  + ++ E ++
Sbjct: 131 ADTDFDAVVADLGLPLIVKPAREGSSIGLSKVTDASQMREAFEKAAALD--NDVIAETFI 188

Query: 173 DGIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           DG ELTC ++G+     +L V  I  P S+ Y Y+ KY + ++ ++ P+ +  ++ +EVQ
Sbjct: 189 DGAELTCPLVGEGATAEALPVIRIVAPDSN-YDYQNKYFTDDTQYLCPSGLSAEVEREVQ 247

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           +LA  A++ +GCRG +R+D +      K F LE+N  PGMT  S+ P  A  AG S+ + 
Sbjct: 248 QLAVQAYRVLGCRGWARADVMLRA-DGKPFLLEMNTSPGMTGHSLVPMAARAAGISYEDF 306

Query: 289 LLWMVEDAS 297
           ++ +V  A+
Sbjct: 307 VMQVVAAAT 315


>gi|303328301|ref|ZP_07358739.1| D-alanine--D-alanine ligase B [Desulfovibrio sp. 3_1_syn3]
 gi|302861631|gb|EFL84567.1| D-alanine--D-alanine ligase B [Desulfovibrio sp. 3_1_syn3]
          Length = 303

 Score =  163 bits (413), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 105/300 (35%), Positives = 157/300 (52%), Gaps = 17/300 (5%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP-DLAFNVLHGN 61
           ++ GG SSEREVSL+  +  A AL   G  V+  D+      +L   +  D A   LHG 
Sbjct: 5   LIAGGWSSEREVSLNGARGMAEALRALGHSVTFFDLLTEFDQLLPQAREHDFALINLHGA 64

Query: 62  FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV-------CPSILVN 114
            GEDGLVQA+L+ +  PY  +G   S L+++K  +KQ+    G+P        CP     
Sbjct: 65  PGEDGLVQAMLDRVGCPYQGAGPAGSFLALNKAAAKQLFRHAGLPTADWEFLPCPP---- 120

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
               D Q  +  P  +K   GGSSL +   +      LD++ +  +  GD+ LIE  + G
Sbjct: 121 --PADWQPRLPYPLFVKSNTGGSSLRLGRARDRAE--LDMVLAEIFAAGDEALIEPELKG 176

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
            E+TCG++G+ +L    I     DF+ YE KY++  +  + PA I  ++   V+ LA  A
Sbjct: 177 REVTCGILGEEALPPILIEPVAGDFFDYESKYATGGAREICPAPIAPELTDRVRELALAA 236

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           H+A+G RG SR+DF+ D   + +  LE+N  PGMT  S+ P+ A   G  F  LL  ++E
Sbjct: 237 HRALGLRGYSRADFILD-ADQNLTLLEVNTLPGMTSTSLVPQEAKVIGLDFGRLLERLME 295


>gi|225858876|ref|YP_002740386.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB)
           (D-Ala-D-Ala ligase B) [Streptococcus pneumoniae 70585]
 gi|225720907|gb|ACO16761.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB)
           (D-Ala-D-Ala ligase B) [Streptococcus pneumoniae 70585]
          Length = 321

 Score =  163 bits (413), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 107/323 (33%), Positives = 167/323 (51%), Gaps = 33/323 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID----------------------- 37
           + VL GG+S EREVS +S K  + +L   G+ V  ID                       
Sbjct: 7   IVVLYGGLSEEREVSENSAKEISKSLLTLGYDVISIDLSQDCSYEIGEIEKSERGLNKQK 66

Query: 38  VDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSK 97
           V+   G++    K D+ F   HG  GE+G +QAI ++ +I YT +  L++A+SMDK  SK
Sbjct: 67  VEIGSGIIDVCRKVDIVFLATHGGIGENGKLQAIFDVEKIDYTGNSFLSTAISMDKKLSK 126

Query: 98  QVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
            V SS G+    +++V+R   +       P VIKP++ GSS GI +++  +    D+   
Sbjct: 127 IVASSVGIKCASNLMVDRIQAN-----DFPIVIKPIRSGSSKGIKILQNKKQ--FDIYYK 179

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
                G    +E+Y+ G E + G++G+  L V EI V K+ FY Y  KY+   +  V+PA
Sbjct: 180 EHPELG-SFFVEKYIKGREFSVGILGETVLPVIEIKV-KNGFYDYNNKYTVGAAEEVVPA 237

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
           KI   +   +Q+ A+  H+A+G    SR+DF+ D     V+++E N  PGMT  S+ P+ 
Sbjct: 238 KISEKLTHTLQKSAYKIHKALGFNVYSRTDFIVDEKG-DVYFIESNSLPGMTKTSLLPQE 296

Query: 278 AAYAGYSFRELLLWMVEDASCLR 300
           A  AG  F  L   ++E +  +R
Sbjct: 297 AKAAGIDFPNLCERIIELSREIR 319


>gi|152988032|ref|YP_001350318.1| D-alanine--D-alanine ligase [Pseudomonas aeruginosa PA7]
 gi|150963190|gb|ABR85215.1| D-alanine--D-alanine ligase [Pseudomonas aeruginosa PA7]
          Length = 319

 Score =  163 bits (413), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 107/304 (35%), Positives = 163/304 (53%), Gaps = 10/304 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL SG     ++  AG     IDV   +   L   K D AF +LHG
Sbjct: 21  VAVLFGGKSAEREVSLKSGAMVLQSMLAAGVDAFGIDVGDDLLHRLVEEKIDRAFIILHG 80

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFT 117
             GEDG +Q +LE   IPYT SG+LASAL+MDK+R+K+V  S G+P  P   V       
Sbjct: 81  RGGEDGSMQGLLECAGIPYTGSGVLASALAMDKLRTKRVWRSLGLPT-PDYAVLGSEDDC 139

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            ++   +  P ++KP   GSS+G+  +     +     +++ ++   Q+L+EQ++ G E 
Sbjct: 140 REAAQRLGFPLIVKPAHEGSSIGMAKVGGLDELIAAWREAARYDS--QVLVEQWISGPEF 197

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           T   +    L    +  P + FY Y+ KY + ++ + +P  +      E++ L   A  A
Sbjct: 198 TVATLRGQVLPAIRLGTPHT-FYDYDAKYLASDTRYQVPCGLDEAKESELKDLTARACDA 256

Query: 238 IGCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +G +G  R+D + D   R  FW LE+N  PGMT  S+ P  A  AG  F++L+L ++ D+
Sbjct: 257 LGIQGWGRADVMQDAEGR--FWLLEVNTAPGMTDHSLVPMAARAAGLDFQQLVLAILADS 314

Query: 297 SCLR 300
              R
Sbjct: 315 REAR 318


>gi|300112946|ref|YP_003759521.1| D-alanine/D-alanine ligase [Nitrosococcus watsonii C-113]
 gi|299538883|gb|ADJ27200.1| D-alanine/D-alanine ligase [Nitrosococcus watsonii C-113]
          Length = 316

 Score =  163 bits (412), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 107/300 (35%), Positives = 161/300 (53%), Gaps = 14/300 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG S+ERE+SL SG A   AL   G +   IDV + V   L+  +   AF VLHG
Sbjct: 13  VAVLMGGYSAEREISLKSGTAVLQALLRQGIEAHGIDVGKEVLTQLSKGEFTRAFIVLHG 72

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG++Q  LE L +PYT SG+L SAL+MDK+RSKQ+     +P       +  T D+
Sbjct: 73  RGGEDGVIQGALETLNLPYTGSGVLGSALTMDKLRSKQLWRGMDLPTAD---FSALTEDT 129

Query: 121 QHLI-----SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175
              +       P ++KP + GSSLG++ ++   ++     +++ ++    +  E+++ G 
Sbjct: 130 DPAVIAADLGLPLIVKPAREGSSLGMMKVESTDALQSAYREAAIFDTA--VFAERWLSGA 187

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLA 234
           E T  ++ D  L +  +  P+  FY +E KY + N+TH   P  +       +Q LA  A
Sbjct: 188 EYTAAILADRVLPLIRLETPRV-FYDFEAKYHA-NTTHYFCPCGLSERQEHVLQALALEA 245

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            Q +G  G  R D   D  +   + LEIN  PGMT  S+ P  A  AG  F E++L ++E
Sbjct: 246 FQVLGASGWGRVDLRCDEKAHP-YLLEINTVPGMTDHSLVPMAAQAAGIGFDEMVLRILE 304


>gi|262193685|ref|YP_003264894.1| D-alanine/D-alanine ligase [Haliangium ochraceum DSM 14365]
 gi|262077032|gb|ACY13001.1| D-alanine/D-alanine ligase [Haliangium ochraceum DSM 14365]
          Length = 330

 Score =  163 bits (412), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 100/299 (33%), Positives = 165/299 (55%), Gaps = 9/299 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID--VDRSVGLVLAHLKPDLAFNVL 58
           + VL GG SSEREVSL SG    +AL++ G++   +D     S+  +L   + ++ +N L
Sbjct: 26  VGVLYGGPSSEREVSLESGAGVLAALQERGYECVGVDWTPGSSLPALLVEHRVEVVWNAL 85

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
           HG +GEDG VQ +   + +P T + I ASA++MDK+ SK++  S GVP     ++     
Sbjct: 86  HGTYGEDGAVQGLCACMGLPCTGASIAASAVAMDKILSKRLFESVGVPTPQWRVLRPDEG 145

Query: 119 DSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175
           D+  + +    P VIKP   GSS+G+ ++++   I   L ++ +      +L+E+Y++G+
Sbjct: 146 DTAAVFAEWALPLVIKPAYEGSSVGLSLVRERDEIGPALKRARAGQ--GPVLVERYIEGV 203

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
           EL+ G++ D  L   EI  P S  Y YE KY   ++  ++P ++        + L   A+
Sbjct: 204 ELSVGILADRVLGAVEIR-PTSGLYDYEAKYVRDDTAFLVPPELERGHIDTCEALGLRAY 262

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            A+GC G +R+D          F LE+N  PGMT  S+ P++AA+AG  +  L   ++E
Sbjct: 263 HALGCTGYARADLRVQ-ADGSAFILEVNTLPGMTSHSLLPKVAAHAGVDYPTLCERILE 320


>gi|269129158|ref|YP_003302528.1| D-alanine/D-alanine ligase [Thermomonospora curvata DSM 43183]
 gi|268314116|gb|ACZ00491.1| D-alanine/D-alanine ligase [Thermomonospora curvata DSM 43183]
          Length = 319

 Score =  163 bits (412), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 101/301 (33%), Positives = 162/301 (53%), Gaps = 18/301 (5%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62
           VL GG+S EREVSL SG+  A AL          D D ++   L    PD  F VLHG+ 
Sbjct: 14  VLAGGLSYEREVSLRSGRRVADALRALDVDAQVHDADATLLQTLQQAPPDAVFPVLHGSM 73

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-- 120
           GEDG ++ +LEL+ +PY  +   A  ++ DK  +K VV + G+   PS+ + +       
Sbjct: 74  GEDGAIRDVLELVGVPYVGARPDACRVAWDKPTAKSVVRAAGLATPPSVTLPKEVFHDLG 133

Query: 121 --------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                      +  P  +KP +GGS+LG  V+++   +P  ++    + +GD  LIE+++
Sbjct: 134 AAAVLECVVRRLGLPLFVKPARGGSALGASVVREAGDLPAAMV--GCFAYGDAALIERHI 191

Query: 173 DGIELTCGVM---GD-ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           +G E+   V+   G+  +L   EI VP  + Y Y  +Y + ++  V PA++P ++ +   
Sbjct: 192 EGTEVAVSVIERDGEPVALPAVEI-VPAGELYDYTARYDAGDTEFVTPARLPEEVARRAA 250

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
             A  AH+A+G R +SR+D + D  + +V +LE+NV PGMT  S+FP   A AG +   +
Sbjct: 251 EAAVTAHRALGLRDLSRTDLIVDE-AGQVHFLEVNVAPGMTETSLFPRAVAAAGLNLGRI 309

Query: 289 L 289
           L
Sbjct: 310 L 310


>gi|118496775|ref|YP_897825.1| D-alanine-D-alanine ligase B [Francisella tularensis subsp.
           novicida U112]
 gi|190359133|sp|A0Q4A6|DDL_FRATN RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|118422681|gb|ABK89071.1| D-alanine-D-alanine ligase B [Francisella novicida U112]
 gi|328676235|gb|AEB27105.1| D-alanine--D-alanine ligase [Francisella cf. novicida Fx1]
          Length = 296

 Score =  163 bits (412), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 108/299 (36%), Positives = 164/299 (54%), Gaps = 12/299 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59
           + VL GG S EREVSL SGKA   +L   G+    +D   + +   L  LKPD  F  LH
Sbjct: 6   IVVLYGGDSPEREVSLKSGKAVLDSLISQGYDAVGVDASGKELVAKLLELKPDKCFVALH 65

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV-CPSILVNRFTM 118
           G  GE+G V A+LE+LEI +T S + +S ++MDKM SK+++    +P      L ++   
Sbjct: 66  GEDGENGRVSALLEMLEIKHTSSSMKSSVITMDKMISKEILMHHRMPTPMAKFLTDKLVA 125

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           + +  IS P  +KP  GGSS+    +K  Q +     ++S +    +++IEQ+V G E+T
Sbjct: 126 EDE--ISFPVAVKPSSGGSSIATFKVKSIQELKHAYEEASKYG---EVMIEQWVTGKEIT 180

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             ++ D       I  P+++FY YE KYS  +  H  P+ +      EV++LA  A+  +
Sbjct: 181 VAIVNDEVYSSVWIE-PQNEFYDYESKYSGKSIYHS-PSGLCEQKELEVRQLAKKAYDLL 238

Query: 239 GCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           GC G +R DF++D   R  F+ +EIN  PGMT  S+ P+ AA  G  F   +  ++E A
Sbjct: 239 GCSGHARVDFIYD--DRGNFYIMEINSSPGMTENSLSPKSAAAEGVDFDSFVKRIIEQA 295


>gi|238752433|ref|ZP_04613910.1| D-alanine--D-alanine ligase [Yersinia rohdei ATCC 43380]
 gi|238709366|gb|EEQ01607.1| D-alanine--D-alanine ligase [Yersinia rohdei ATCC 43380]
          Length = 287

 Score =  163 bits (412), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 98/281 (34%), Positives = 153/281 (54%), Gaps = 13/281 (4%)

Query: 18  SGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEI 77
           SG+A  + L +AG     ID        L     D  F  LHG  GEDG +Q +LE L++
Sbjct: 3   SGQAVLAGLREAGIDAHGIDTKDFPVTELKAQGFDKVFIALHGRGGEDGTLQGVLEFLQL 62

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---FTMDSQHL------ISPPY 128
           PYT SG++ASAL+MDK+R+K V  + G+P+ P + +NR    T+ S+ L      +  P 
Sbjct: 63  PYTGSGVMASALTMDKLRTKLVWQASGLPISPYVALNRQQFETLSSEELSASVAKLGLPL 122

Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD 188
           ++KP   GSS+G+  + K   +   L++  ++ H   +LIE+++ G E T  ++GD  L 
Sbjct: 123 IVKPSHEGSSVGMSKVDKISELQGALVE--AFRHDTDVLIEKWLSGPEFTVAILGDEVLP 180

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
              I  P   FY YE KY S  + +  P+ +  ++ +++  L+  A+QA+GC G  R D 
Sbjct: 181 SIRIQAPGV-FYDYEAKYLSDETQYFCPSGLSAELEQQLAALSLQAYQALGCSGWGRVDV 239

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           + D      + LE+N  PGMT  S+ P  A  +G SF +L+
Sbjct: 240 MQDS-DGSFYLLEVNTSPGMTSHSLVPMAARQSGLSFSQLV 279


>gi|331001070|ref|ZP_08324701.1| D-ala D-ala ligase protein [Parasutterella excrementihominis YIT
           11859]
 gi|329569375|gb|EGG51153.1| D-ala D-ala ligase protein [Parasutterella excrementihominis YIT
           11859]
          Length = 313

 Score =  163 bits (412), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 116/304 (38%), Positives = 163/304 (53%), Gaps = 12/304 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AV+MGG S EREVSL SG     AL+  G  V + D        LA +  D AF +LHG
Sbjct: 12  IAVVMGGSSGEREVSLMSGSGVLKALQSVGADVVKFDPAEQPLSDLAGI--DRAFLILHG 69

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119
             GEDG++Q ++E L+IPYT SG+ ASA+ +DK  +K V  + G+PV P  +V R   D 
Sbjct: 70  KGGEDGVIQGVMEFLKIPYTGSGVQASAIGIDKEMTKAVWEAQGIPV-PRGMVLRNETDC 128

Query: 120 --SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
             +    +   VIKP K GSSLG+  +K      +    + S   G  +L E+YV G EL
Sbjct: 129 EEAHRRFNGNLVIKPSKEGSSLGLYKLKNATLDQVKEAFAKSQEAGMTVLAEEYVFGREL 188

Query: 178 TCGV--MGDA--SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           T  V  MG+   +  + EI  P  D Y +E KY S  + +V PA++P ++ ++++ +   
Sbjct: 189 TVAVLDMGEGLKAFPIIEIKAPDGD-YDFEHKYFSDETVYVCPAEVPENVTEKIKAVVEK 247

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           A  A+G    SR D +       V  LEIN  PGMTP S+ P  A   G S+ EL+  + 
Sbjct: 248 AALAVGADAWSRIDVILRGDGSFVL-LEINTAPGMTPHSLVPLAARTCGISYEELVKQVA 306

Query: 294 EDAS 297
             AS
Sbjct: 307 ARAS 310


>gi|121998867|ref|YP_001003654.1| D-alanine--D-alanine ligase [Halorhodospira halophila SL1]
 gi|190359139|sp|A1WYU0|DDL_HALHL RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|121590272|gb|ABM62852.1| D-alanine--D-alanine ligase [Halorhodospira halophila SL1]
          Length = 304

 Score =  163 bits (412), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 107/300 (35%), Positives = 166/300 (55%), Gaps = 14/300 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-VDRSVGLVLAHLKPDLAFNVLH 59
           +AVLMGG S+ER++SL SG A  +AL+  G+     D  DR++  +  +   D+ F  LH
Sbjct: 13  VAVLMGGTSAERDISLRSGGAILAALQRCGYDAEAYDPRDRALEGLRGY---DVVFIALH 69

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFT 117
           G  GEDG VQ +L+LL IPYT SG+L SAL MDK R K++    G+P     L+  +R  
Sbjct: 70  GRGGEDGTVQGLLDLLGIPYTGSGVLGSALGMDKWRCKRLWQGSGLPTPAGQLLTGDRPV 129

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
           +D    +  P ++KP + GSSLG+  ++  + +      +++++  D +L E +V+G E 
Sbjct: 130 LDEG--VGYPVIVKPAREGSSLGMSRVEGPEELAEAYRVAAAYD--DTVLAEAWVEGEEY 185

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           T  ++GD +L    +  P + F+ Y  KY + ++ H  P+ +  +   E+  L   A  A
Sbjct: 186 TVALLGDQALPSIRLETPHA-FFDYAAKYQAEDTGHHCPSGLGPEEEAELGALCREAFIA 244

Query: 238 IGCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            G  G  R D + D   R  +W LE+N  PGMT  S+ P  AA AG  F EL+  ++ +A
Sbjct: 245 SGGNGWGRVDVMRDTGGR--WWLLEVNTIPGMTDHSLVPIAAAQAGIGFDELVARILGEA 302


>gi|134302707|ref|YP_001122675.1| D-alanine--D-alanine ligase [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|190359134|sp|A4J053|DDL_FRATW RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|134050484|gb|ABO47555.1| D-alanine--D-alanine ligase [Francisella tularensis subsp.
           tularensis WY96-3418]
          Length = 296

 Score =  162 bits (411), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 108/299 (36%), Positives = 164/299 (54%), Gaps = 12/299 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59
           + VL GG S EREVSL SGKA   +L   G+    +D   + +   L  LKPD  F  LH
Sbjct: 6   IVVLYGGDSPEREVSLKSGKAVLDSLISQGYDAVGVDASGKELVAKLLELKPDKCFVALH 65

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV-CPSILVNRFTM 118
           G  GE+G V A+LE+LEI +T S + +S ++MDKM SK+++    +P      L ++   
Sbjct: 66  GEDGENGRVSALLEMLEIKHTSSSMKSSVITMDKMISKEILMHYRMPTPMAKFLTDKLVA 125

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           + +  IS P  +KP  GGSS+    +K  Q +     ++S +    +++IEQ+V G E+T
Sbjct: 126 EDE--ISFPVAVKPSSGGSSIATFKVKSIQELKHAYEEASKYG---EVMIEQWVTGKEIT 180

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             ++ D       I  P+++FY YE KYS  +  H  P+ +      EV++LA  A+  +
Sbjct: 181 VAIVNDEVYSSVWIE-PQNEFYDYESKYSGKSIYHS-PSGLCEQKELEVRQLAKKAYDLL 238

Query: 239 GCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           GC G +R DF++D   R  F+ +EIN  PGMT  S+ P+ AA  G  F   +  ++E A
Sbjct: 239 GCSGHARVDFIYD--DRGNFYIMEINSSPGMTDNSLSPKSAAAEGVDFDSFVKRIIEQA 295


>gi|56707350|ref|YP_169246.1| D-alanyl-alanine synthetase A [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110669820|ref|YP_666377.1| D-alanine--D-alanine ligase B [Francisella tularensis subsp.
           tularensis FSC198]
 gi|115315497|ref|YP_764220.1| D-alanine--D-alanine ligase [Francisella tularensis subsp.
           holarctica OSU18]
 gi|156503383|ref|YP_001429448.1| D-alanyl-alanine synthetase A [Francisella tularensis subsp.
           holarctica FTNF002-00]
 gi|290953356|ref|ZP_06557977.1| D-alanyl-alanine synthetase A [Francisella tularensis subsp.
           holarctica URFT1]
 gi|295313403|ref|ZP_06804010.1| D-alanyl-alanine synthetase A [Francisella tularensis subsp.
           holarctica URFT1]
 gi|81598013|sp|Q5NI96|DDL_FRATT RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|122324519|sp|Q0BK01|DDL_FRATO RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|123169653|sp|Q14JP9|DDL_FRAT1 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|190359132|sp|A7NET9|DDL_FRATF RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|56603842|emb|CAG44818.1| D-alanine--D-alanine ligase B [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110320153|emb|CAL08201.1| D-alanine--D-alanine ligase B [Francisella tularensis subsp.
           tularensis FSC198]
 gi|115130396|gb|ABI83583.1| D-alanine--D-alanine ligase [Francisella tularensis subsp.
           holarctica OSU18]
 gi|156253986|gb|ABU62492.1| D-alanine--D-alanine ligase [Francisella tularensis subsp.
           holarctica FTNF002-00]
 gi|282158482|gb|ADA77873.1| D-alanine--D-alanine ligase [Francisella tularensis subsp.
           tularensis NE061598]
          Length = 296

 Score =  162 bits (411), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 108/299 (36%), Positives = 164/299 (54%), Gaps = 12/299 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59
           + VL GG S EREVSL SGKA   +L   G+    +D   + +   L  LKPD  F  LH
Sbjct: 6   IVVLYGGDSPEREVSLKSGKAVLDSLISQGYDAVGVDASGKELVAKLLELKPDKCFVALH 65

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV-CPSILVNRFTM 118
           G  GE+G V A+LE+LEI +T S + +S ++MDKM SK+++    +P      L ++   
Sbjct: 66  GEDGENGRVSALLEMLEIKHTSSSMKSSVITMDKMISKEILMHHRMPTPMAKFLTDKLVA 125

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           + +  IS P  +KP  GGSS+    +K  Q +     ++S +    +++IEQ+V G E+T
Sbjct: 126 EDE--ISFPVAVKPSSGGSSIATFKVKSIQELKHAYEEASKYG---EVMIEQWVTGKEIT 180

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             ++ D       I  P+++FY YE KYS  +  H  P+ +      EV++LA  A+  +
Sbjct: 181 VAIVNDEVYSSVWIE-PQNEFYDYESKYSGKSIYHS-PSGLCEQKELEVRQLAKKAYDLL 238

Query: 239 GCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           GC G +R DF++D   R  F+ +EIN  PGMT  S+ P+ AA  G  F   +  ++E A
Sbjct: 239 GCSGHARVDFIYD--DRGNFYIMEINSSPGMTDNSLSPKSAAAEGVDFDSFVKRIIEQA 295


>gi|332701304|ref|ZP_08421392.1| D-alanine--D-alanine ligase [Desulfovibrio africanus str. Walvis
           Bay]
 gi|332551453|gb|EGJ48497.1| D-alanine--D-alanine ligase [Desulfovibrio africanus str. Walvis
           Bay]
          Length = 306

 Score =  162 bits (411), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 104/289 (35%), Positives = 156/289 (53%), Gaps = 6/289 (2%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQID-VDRSVGLVLAHLKPDLAFNVLHGN 61
           ++ GG S+EREVSLS       AL   G KV+++D  +R   ++      D AF  +HG 
Sbjct: 5   LIAGGWSNEREVSLSGAAKIHEALLRLGCKVTRLDPAERFDDILELASGSDFAFINMHGT 64

Query: 62  FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-SILVNRFTMDS 120
            GEDGLVQA+LE ++ PY  SG  AS L+++K  +KQV +  G+P      L  R     
Sbjct: 65  PGEDGLVQAMLEQVDCPYQGSGPKASFLALNKACAKQVFARAGIPTPRWEYLPRRPQAGW 124

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P  +KP  GGSSL +   + D +  L       +  G+ +L+E+ V+G E+T  
Sbjct: 125 STKLRFPLFVKPNMGGSSLDLC--RADNAEELTPAIERIFCRGETVLLEEGVNGQEVTSA 182

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           ++G+ +L +  I      F+ Y  KY+   +  + PA IP  I + VQ L+  AH+A+  
Sbjct: 183 ILGEKALPLILIQPAGCAFFDYRCKYTQGGAKEICPAPIPERIARRVQELSMRAHKAMKL 242

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           RG SRSDF+ +    + + LE+N  PGMTP S+ P+ A  AG  F  L+
Sbjct: 243 RGYSRSDFMLE--GDEPYILEVNTLPGMTPTSLVPQAAHEAGLDFDALI 289


>gi|148985012|ref|ZP_01818255.1| D-alanine-D-alanine ligase and related ATP-grasp enzyme
           [Streptococcus pneumoniae SP3-BS71]
 gi|147922710|gb|EDK73827.1| D-alanine-D-alanine ligase and related ATP-grasp enzyme
           [Streptococcus pneumoniae SP3-BS71]
 gi|301800019|emb|CBW32612.1| D-Ala D-Ala ligase A [Streptococcus pneumoniae OXC141]
          Length = 321

 Score =  162 bits (411), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 107/323 (33%), Positives = 167/323 (51%), Gaps = 33/323 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID----------------------- 37
           + VL GG+S EREVS +S K  + +L   G+ V  ID                       
Sbjct: 7   IVVLYGGLSEEREVSENSAKEISKSLLTLGYDVISIDLSQDCSYEIGEIEKSERGLNKQK 66

Query: 38  VDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSK 97
           V+   G++    K D+ F   HG  GE+G +QAI ++ +I YT +  L++A+SMDK  SK
Sbjct: 67  VEIGSGIIDVCRKVDIVFLATHGGIGENGKLQAIFDVEKIDYTGNSFLSTAISMDKKLSK 126

Query: 98  QVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
            V SS G+    +++V+R   +       P VIKP++ GSS GI + +  +    D+   
Sbjct: 127 IVASSVGIKCASNLMVDRIQAN-----DFPIVIKPIRSGSSKGIKIFQNKKQ--FDIYYK 179

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
                G  + +E+Y+ G E + G++G+  L V EI V K+ FY Y  KY+   +  V+PA
Sbjct: 180 EHPELG-SVFVEKYIKGREFSVGILGETVLPVIEIKV-KNGFYDYNNKYTVGAAEEVVPA 237

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
           KI   +   +Q+ A+  H+A+G    SR+DF+ D     V+++E N  PGMT  S+ P+ 
Sbjct: 238 KISEKLTHTLQKSAYKIHKALGFNVYSRTDFIVDEKG-DVYFIESNSLPGMTKTSLLPQE 296

Query: 278 AAYAGYSFRELLLWMVEDASCLR 300
           A  AG  F  L   ++E +  +R
Sbjct: 297 AKAAGIDFPNLCERIIELSREIR 319


>gi|296160539|ref|ZP_06843355.1| D-alanine/D-alanine ligase [Burkholderia sp. Ch1-1]
 gi|295889288|gb|EFG69090.1| D-alanine/D-alanine ligase [Burkholderia sp. Ch1-1]
          Length = 313

 Score =  162 bits (411), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 106/301 (35%), Positives = 165/301 (54%), Gaps = 19/301 (6%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-VDRSVGLVLAHLKPD---LAFN 56
           +AVL+GG S+EREVSL+SG+     L DAG      D  +R     LA LK +    AFN
Sbjct: 12  VAVLLGGNSAEREVSLNSGRLVLQGLRDAGIDAHPFDPAERP----LAALKEEGFVRAFN 67

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR- 115
            LHG +GE+G +Q  L+   I YT SG+L SAL +DK R+K V    GVP  P   V R 
Sbjct: 68  ALHGGYGENGQIQGALDFYGIRYTGSGVLGSALGLDKFRTKLVWQQLGVPTPPFETVLRG 127

Query: 116 --FTMDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
             +   ++ +++    P  +KP   GSS+ +I +K   ++P  L+++  ++    +++E+
Sbjct: 128 DDYEARAKDIVAKLGLPLFVKPASEGSSVAVIKVKSADALPAALIEAVKFDR--IVVVEK 185

Query: 171 YVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
            ++ G E T  + G+  L V  I VP  +FY Y  KY + ++ +++P  +  D    ++ 
Sbjct: 186 SIEGGGEYTACIAGNLDLPVIRI-VPAGEFYDYHAKYIANDTQYLIPCGLAADEEARLKV 244

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           LA  A   +GC    R+DF+ D      F LE+N  PGMT  S+ P+ A   G S++EL+
Sbjct: 245 LARRAFDVLGCTDWGRADFMLDADGNPYF-LEVNTAPGMTDHSLPPKAARAVGISYQELV 303

Query: 290 L 290
           +
Sbjct: 304 V 304


>gi|89257158|ref|YP_514520.1| D-alanyl-alanine synthetase A [Francisella tularensis subsp.
           holarctica LVS]
 gi|122500155|sp|Q2A182|DDL_FRATH RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|89144989|emb|CAJ80349.1| D-alanine--D-alanine ligase B [Francisella tularensis subsp.
           holarctica LVS]
          Length = 296

 Score =  162 bits (411), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 108/299 (36%), Positives = 164/299 (54%), Gaps = 12/299 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59
           + VL GG S EREVSL SGKA   +L   G+    +D   + +   L  LKPD  F  LH
Sbjct: 6   IVVLYGGDSPEREVSLKSGKAVLDSLISQGYDAVGVDASGKELVAKLLELKPDKCFVALH 65

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV-CPSILVNRFTM 118
           G  GE+G V A+LE+LEI +T S + +S ++MDKM SK+++    +P      L ++   
Sbjct: 66  GEDGENGRVSALLEMLEIKHTSSSMKSSVITMDKMISKEILMHHRMPTPMAKFLTDKLVA 125

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           + +  IS P  +KP  GGSS+    +K  Q +     ++S +    +++IEQ+V G E+T
Sbjct: 126 EDE--ISFPAAVKPSSGGSSIATFKVKSIQELKHAYEEASKYG---EVMIEQWVTGKEIT 180

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             ++ D       I  P+++FY YE KYS  +  H  P+ +      EV++LA  A+  +
Sbjct: 181 VAIVNDEVYSSVWIE-PQNEFYDYESKYSGKSIYHS-PSGLCEQKELEVRQLAKKAYDLL 238

Query: 239 GCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           GC G +R DF++D   R  F+ +EIN  PGMT  S+ P+ AA  G  F   +  ++E A
Sbjct: 239 GCSGHARVDFIYD--DRGNFYIMEINSSPGMTDNSLSPKSAAAEGVDFDSFVKRIIEQA 295


>gi|113869224|ref|YP_727713.1| D-alanine--D-alanine ligase [Ralstonia eutropha H16]
 gi|123133594|sp|Q0K6M6|DDL_RALEH RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|113528000|emb|CAJ94345.1| D-Alanine-D-Alanine ligase [Ralstonia eutropha H16]
          Length = 327

 Score =  162 bits (411), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 97/304 (31%), Positives = 169/304 (55%), Gaps = 12/304 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VL+GG S+ERE+SL SG    +AL+  G      D        LA    D  F  LHG
Sbjct: 17  VGVLLGGRSAEREISLMSGNGVLAALQSRGVDAHGFDPGLQSVAELAAAGFDRVFIALHG 76

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG +Q +LE L +PYT SG+LASA++MDK  +K++  + G+   P   +     D 
Sbjct: 77  RYGEDGTIQGLLEQLGVPYTGSGVLASAMAMDKQATKRLWMTYGL-ATPRFAMLHADTDF 135

Query: 121 QHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
             + +    P ++KP + GSS+G+  +     +     ++++ +  + ++ E ++DG EL
Sbjct: 136 DAVAADLGLPLIVKPAREGSSIGLTKVTAADQMRAAFEKAAALD--NDVIAETFIDGAEL 193

Query: 178 TCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           TC ++G+     +L V  I  P+++ Y Y+ KY + ++ ++ P+ +  ++ +EV+ LA  
Sbjct: 194 TCPIVGEGDSAEALPVIRIVAPEAN-YDYQNKYFTDDTQYLCPSGLDPEVEREVRALAVQ 252

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +++ +GCRG +R+D +      K F LE+N  PGMT  S+ P  A   G S+ + ++ +V
Sbjct: 253 SYRVLGCRGWARADLMLRA-DGKPFLLEMNTSPGMTGHSLVPMAARAVGISYEDFVMQVV 311

Query: 294 EDAS 297
             A+
Sbjct: 312 AAAT 315


>gi|54113087|gb|AAV29177.1| NT02FT0155 [synthetic construct]
          Length = 296

 Score =  162 bits (411), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 108/299 (36%), Positives = 164/299 (54%), Gaps = 12/299 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59
           + VL GG S EREVSL SGKA   +L   G+    +D   + +   L  LKPD  F  LH
Sbjct: 6   IVVLYGGDSPEREVSLKSGKAVLDSLISQGYDAVGVDASGKELVAKLLELKPDKCFVALH 65

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV-CPSILVNRFTM 118
           G  GE+G V A+LE+LEI +T S + +S ++MDKM SK+++    +P      L ++   
Sbjct: 66  GEDGENGRVSALLEMLEIKHTSSSMKSSVITMDKMISKEILMHHRMPTPMAKFLTDKLVA 125

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           + +  IS P  +KP  GGSS+    +K  Q +     ++S +    +++IEQ+V G E+T
Sbjct: 126 EDE--ISFPVAVKPSSGGSSIATFKVKSIQELKHAYEEASKYG---EVMIEQWVTGKEIT 180

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             ++ D       I  P+++FY YE KYS  +  H  P+ +      EV++LA  A+  +
Sbjct: 181 VAIVNDEVYSSVWIE-PQNEFYDYESKYSGKSIYHS-PSGLCEQKELEVRQLAKKAYDLL 238

Query: 239 GCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           GC G +R DF++D   R  F+ +EIN  PGMT  S+ P+ AA  G  F   +  ++E A
Sbjct: 239 GCSGHARVDFIYD--DRGNFYIMEINSSPGMTDNSLSPKSAAAEGVDFDSFVKRIIEQA 295


>gi|119897177|ref|YP_932390.1| D-alanine--D-alanine ligase [Azoarcus sp. BH72]
 gi|190359112|sp|A1K3U8|DDL_AZOSB RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|119669590|emb|CAL93503.1| probable D-alanine-D-alanine ligase [Azoarcus sp. BH72]
          Length = 304

 Score =  162 bits (411), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 110/303 (36%), Positives = 161/303 (53%), Gaps = 16/303 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+ER+VSL SG A  +AL+ AG      D       +L     D  F  LHG
Sbjct: 8   VAVLFGGSSAERDVSLMSGAAVLAALQGAGVDAHAFDPAERDLHILKEEGYDRVFIALHG 67

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---FT 117
             GEDG VQ  LEL+ IPYT SG++ASAL+MDK R+K V  SCG+P     +++    F 
Sbjct: 68  RGGEDGTVQGALELMGIPYTGSGVMASALAMDKWRTKMVWLSCGLPTPRYAILDADSDFD 127

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN---HGDQLLI-EQYVD 173
             ++ L  P +V KP+  GSS+G   + +   +       ++W      D L+I E+++ 
Sbjct: 128 AIARDLGLPIFV-KPVHEGSSMGATKVTEAGQL------RAAWELAARYDSLVIAEEFIS 180

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           G ELT   + D +L +  I  P  + Y Y+ KY + ++ +  P  +P    + +Q L   
Sbjct: 181 GQELTAPFLDDRALPLVRIVAPDGN-YDYQHKYFTDDTRYDCPCGLPQAEEEALQALILK 239

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           + + +GCRG  R+D +  P  R  + LE+N  PGMT  S+ P  A  AG SF  L L ++
Sbjct: 240 SARVLGCRGWGRADLILTPEGRP-YLLEMNTSPGMTGHSLVPMSARVAGMSFEALCLAIL 298

Query: 294 EDA 296
             A
Sbjct: 299 AGA 301


>gi|269468110|gb|EEZ79820.1| D-alanine-D-alanine ligase [uncultured SUP05 cluster bacterium]
          Length = 292

 Score =  162 bits (411), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 106/295 (35%), Positives = 158/295 (53%), Gaps = 4/295 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG S+EREVSL SG+A   AL+    K  + D +      L   K D AF VLHG
Sbjct: 2   IAVLMGGNSAEREVSLESGEAVYIALKTQNIKCFKFDWNGDNLADLWSKKFDQAFIVLHG 61

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q  LE   I YT S   +S   M+K  +K +     +P+ PS++ N      
Sbjct: 62  RGGEDGFIQKKLEDRNITYTGSDSRSSKNCMNKTTTKTIWKENDLPLAPSVVSNANEPIP 121

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
                 P+ +KP   GSS+GI  +  DQS  L+   + +W +    LIE++++G E T  
Sbjct: 122 SITFPLPWAVKPTLEGSSIGISKV-TDQS-QLNEALALAWKYDQNALIERWIEGDEYTVS 179

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           ++ + +L   +I V +  FY Y+ KY S ++ ++ P  +P    K +Q +A  A +A+  
Sbjct: 180 ILNNKALPAIKIIVNRG-FYDYKSKYHSDDTQYLCPCGLPETDEKHLQSIALRAFKAMNA 238

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
               R DF+ D  ++K++ LEIN  PGMT  S+ P  A   G SF EL+L ++ D
Sbjct: 239 SNWGRVDFIIDK-NQKIYLLEINTVPGMTSHSLVPMAAKAEGISFDELVLNILND 292


>gi|292669643|ref|ZP_06603069.1| UDP-N-acetylmuramate--L-alanine ligase [Selenomonas noxia ATCC
           43541]
 gi|292648440|gb|EFF66412.1| UDP-N-acetylmuramate--L-alanine ligase [Selenomonas noxia ATCC
           43541]
          Length = 779

 Score =  162 bits (411), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 100/299 (33%), Positives = 162/299 (54%), Gaps = 15/299 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-VDRSVGLVLAHLKPDLAFNVLH 59
           + V+MGG S+E EVS  SGKA   AL   G+  + ++ + ++    +  L+P + FN LH
Sbjct: 473 IVVVMGGPSTEAEVSRRSGKAILQALLSKGYPAAGLELMPKTFAEEIQKLRPAIVFNALH 532

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN----- 114
           G +GEDG++Q  L++L +PYT SG+ A+AL+MDK  +K++  + G+      L++     
Sbjct: 533 GKYGEDGVLQGTLDMLGVPYTGSGVRAAALTMDKGTAKRIFRAEGIATPRFRLIDAGKCG 592

Query: 115 -RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
                D +     P V+K  + GSS+G+ ++ + +   L+      + +G + L+E+++ 
Sbjct: 593 EHTAEDIRREFGLPVVVKAPEQGSSIGVHIVTRAEE--LNAALDDVFTYGREALVEEFIR 650

Query: 174 GIELTCGVMG----DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           G ELT  V G      +L V EI    S  Y YE KY+   STH++PA +  +  + VQ 
Sbjct: 651 GRELTVVVWGMPAAAEALPVIEITT-ASGRYDYESKYTPGASTHIVPAALSKECTEAVQA 709

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           +A  A  A GC G +R D +      + + +E+N  PGMT  S+ P+ A   G  F EL
Sbjct: 710 IAVRAFTACGCSGAARVDIMLSE-EEQPYVIEVNAVPGMTETSLVPDAARAVGMEFPEL 767


>gi|254246417|ref|ZP_04939738.1| D-alanine-D-alanine ligase [Burkholderia cenocepacia PC184]
 gi|124871193|gb|EAY62909.1| D-alanine-D-alanine ligase [Burkholderia cenocepacia PC184]
          Length = 312

 Score =  162 bits (410), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 105/300 (35%), Positives = 164/300 (54%), Gaps = 18/300 (6%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-VDRSVGLVLAHLKPD---LAFN 56
           +AVL GG S+EREVSL+SG+     L DAG      D  +R     L+ LK +    AFN
Sbjct: 12  VAVLFGGESAEREVSLTSGRLVLQGLRDAGVDAHPFDPAERP----LSALKDEGFVRAFN 67

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR- 115
            LHG +GE+G +Q  L+   I YT SG+L SAL +DK R+K V    GVP  P   V R 
Sbjct: 68  ALHGGYGENGQIQGALDFYGIRYTGSGVLGSALGLDKFRTKLVWQQTGVPTPPFETVMRG 127

Query: 116 -----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                   D    +  P  +KP   GSS+ ++ +K   ++P  L ++++  H   +++E+
Sbjct: 128 DDLAARATDIVTKLGLPLFVKPASEGSSVAVLKVKTADALPAALAEAAT--HDKIVIVEK 185

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            ++G E T  + GD  L + +I VP  +FY Y  KY + ++ +++P  +P +   E++R+
Sbjct: 186 SIEGGEYTACIAGDLDLPLIKI-VPAGEFYDYHAKYVADDTQYLIPCGLPAEQETELKRI 244

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A  A   +GC    R+DF+ D  +   ++LE+N  PGMT  S+ P+ A   G  + EL++
Sbjct: 245 ARRAFDVLGCTDWGRADFMLD-AAGNAYFLEVNTAPGMTDHSLPPKAARAVGIGYSELVV 303


>gi|88858804|ref|ZP_01133445.1| D-alanine-D-alanine ligase B, affects cell division
           [Pseudoalteromonas tunicata D2]
 gi|88819030|gb|EAR28844.1| D-alanine-D-alanine ligase B, affects cell division
           [Pseudoalteromonas tunicata D2]
          Length = 304

 Score =  162 bits (410), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 102/297 (34%), Positives = 165/297 (55%), Gaps = 7/297 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG S+ER+VSL SG+A  +AL   G      D        L  L+ D AF  LHG
Sbjct: 9   VAVLMGGSSAERDVSLRSGQAVLNALISQGVDAFAFDPAERNLFDLKSLQTDRAFIALHG 68

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR-FTMD 119
             GEDG +Q  LE L +PYT SG+L SAL+MDK+R K++  + G+     ++V +    D
Sbjct: 69  RGGEDGTIQGALEFLGLPYTGSGVLGSALAMDKVRCKELFKARGLSSAEFVVVEQGAQFD 128

Query: 120 SQHLISP--PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
           SQ +I+     ++KP   GSS+G+   K   +  L+   S+++   D +++E+++ G E 
Sbjct: 129 SQAIINEFGAVMVKPAHEGSSIGM--AKAATASELNEAISNAFRFDDTVMLEKWITGREF 186

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           T  ++   +  + E+  P+  FY YE KY + ++ +  PA++     + +Q LA  A + 
Sbjct: 187 TVTMISGVAQPIVEMVTPRG-FYDYEAKYQANSTQYYCPAELSQSETENLQLLAQHAFKL 245

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           +G  G  R D + D  + + + LE+N  PGMT  S+ P  A   G +F +L++ ++E
Sbjct: 246 VGASGWGRVDAMRDQ-AGQFYLLEVNTVPGMTEKSLVPMAAKANGMNFSQLVINILE 301


>gi|91785291|ref|YP_560497.1| D-alanine--D-alanine ligase [Burkholderia xenovorans LB400]
 gi|123168042|sp|Q13TZ4|DDL_BURXL RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|91689245|gb|ABE32445.1| D-alanine--D-alanine ligase [Burkholderia xenovorans LB400]
          Length = 313

 Score =  162 bits (410), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 105/301 (34%), Positives = 165/301 (54%), Gaps = 19/301 (6%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-VDRSVGLVLAHLKPD---LAFN 56
           +AVL+GG S+EREVSL+SG+     L DAG      D  +R     LA LK +    AFN
Sbjct: 12  VAVLLGGNSAEREVSLNSGRLVLQGLRDAGIDAHPFDPAERP----LAALKEEGFVRAFN 67

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR- 115
            LHG +GE+G +Q  L+   I YT SG+L SAL +DK R+K V    G+P  P   V R 
Sbjct: 68  ALHGGYGENGQIQGALDFYGIRYTGSGVLGSALGLDKFRTKLVWQQLGIPTPPFEAVLRG 127

Query: 116 --FTMDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
             +   ++ +++    P  +KP   GSS+ +I +K   ++P  L+++  ++    +++E+
Sbjct: 128 DDYEARAKEIVAKLGLPLFVKPASEGSSVAVIKVKSADALPAALIEAVKFDR--IVVVEK 185

Query: 171 YVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
            ++ G E T  + G+  L V  I VP  +FY Y  KY + ++ +++P  +  D    ++ 
Sbjct: 186 SIEGGGEYTACIAGNLDLPVIRI-VPAGEFYDYHAKYIANDTQYLIPCGLTADEEARLKV 244

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           LA  A   +GC    R+DF+ D      F LE+N  PGMT  S+ P+ A   G S++EL+
Sbjct: 245 LARRAFDVLGCTDWGRADFMLDADGNPYF-LEVNTAPGMTDHSLPPKAARAVGISYQELV 303

Query: 290 L 290
           +
Sbjct: 304 V 304


>gi|320540403|ref|ZP_08040053.1| putative D-alanine:D-alanine ligase [Serratia symbiotica str.
           Tucson]
 gi|320029334|gb|EFW11363.1| putative D-alanine:D-alanine ligase [Serratia symbiotica str.
           Tucson]
          Length = 306

 Score =  162 bits (410), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 108/298 (36%), Positives = 161/298 (54%), Gaps = 13/298 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+ERE+SL SG A  + L + G     ID      + L     +  F  LHG
Sbjct: 5   VAVLLGGTSAEREISLQSGAAVLAGLREGGIDAHGIDPRDFPVIQLKAQGFNKVFISLHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117
             GEDG +Q +LELLE+PYT SG++ASAL MDK RSK +  S  +PV P + +NR     
Sbjct: 65  RGGEDGTIQGLLELLELPYTGSGVMASALGMDKWRSKMLWQSMELPVAPYVALNRKQYAG 124

Query: 118 ------MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +D    +  P ++KP   GSS+G+   K  +S  L++    ++ + D++L+E++
Sbjct: 125 DEKAALLDRLASLGFPLIVKPSCEGSSVGM--SKVSESSTLEVALEEAFRYDDEVLVEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++GD  L    I      FY Y+ KY S N+ +  P+ +  +   E+  LA
Sbjct: 183 LSGPEYTVAMLGDQVLPSIRIQ-SAGRFYDYQAKYISGNTQYFCPSGLSAEQEAEMAALA 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
             A++A+ CRG  R D + D      + LE+N  PGMT  S+ P  A   G SF +L+
Sbjct: 242 LRAYRALDCRGWGRIDLMQDS-DGSFYLLEVNTSPGMTNNSLVPMAARQFGLSFSQLV 298


>gi|288573418|ref|ZP_06391775.1| D-alanine/D-alanine ligase [Dethiosulfovibrio peptidovorans DSM
           11002]
 gi|288569159|gb|EFC90716.1| D-alanine/D-alanine ligase [Dethiosulfovibrio peptidovorans DSM
           11002]
          Length = 308

 Score =  162 bits (410), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 112/305 (36%), Positives = 164/305 (53%), Gaps = 14/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--LAHLKPDLAFNVL 58
           ++VL GG S ER VSL SGK  A  L+  G  V  +D+     L   LA  +P+L F  L
Sbjct: 3   ISVLCGGDSPERNVSLDSGKEVAEGLKAKGHSVELMDLSSPEALFSFLAGDRPELCFVAL 62

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
           HG +GEDG +QA+L++  +PYT SG    A++MDK  SK   ++ G+ V   + V+    
Sbjct: 63  HGGWGEDGRLQAVLDMAGVPYTGSGPSGCAVAMDKTLSKGAFAAAGLDVPWGVAVHPGEG 122

Query: 119 DSQHLISPPY---VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175
            S       +   V+KP  GGS++   ++ ++  +   L  SS+W   ++ L+E YV G 
Sbjct: 123 SSPMKALSKWGTLVVKPCCGGSTVATYIVSEEDELRKAL--SSAWELENRALVEAYVAGR 180

Query: 176 ELTCGVMGD----ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           ELT  V+ D     +  + EI +P  +FY Y  KY    S +V PA +   + + V R A
Sbjct: 181 ELTVTVVEDRGIPRAFPIVEI-LPDGEFYDYRAKYGG-GSRYVSPADLEPSVVEVVSRSA 238

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
            +AH+  GC   SR D   D  +R  F LEIN  PGMT  S+ P+ A   G+SF +LL  
Sbjct: 239 EIAHRVSGCSIYSRVDIRLDGKNRP-FVLEINTVPGMTSNSLVPKAAMAGGFSFPDLLDH 297

Query: 292 MVEDA 296
           +VE++
Sbjct: 298 IVEES 302


>gi|300856376|ref|YP_003781360.1| D-alanine-D-alanine ligase A [Clostridium ljungdahlii DSM 13528]
 gi|300436491|gb|ADK16258.1| D-alanine-D-alanine ligase A [Clostridium ljungdahlii DSM 13528]
          Length = 296

 Score =  162 bits (410), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 97/292 (33%), Positives = 164/292 (56%), Gaps = 9/292 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGGISSEREVSL+SGK   + L+   ++V  I +D+   ++      D AF  LHG
Sbjct: 3   IGVIMGGISSEREVSLNSGKEIVNCLDKNKYEVVPIVIDKKRDVLEKVKDIDFAFIALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN---RFT 117
            FGEDG +Q++LE ++IPY+  G L SA+ MDK  SK+V+ S  +     I V       
Sbjct: 63  KFGEDGTIQSVLETMDIPYSGCGPLTSAICMDKDMSKKVLKSADINTAKWICVKSIEEID 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            D    I  P V+KP  GGSS+   ++KK + I  ++    + ++  +++IE+Y+ G E+
Sbjct: 123 YDKLDEIGYPVVVKPNCGGSSVATNIVKKKEDIENNV--KLALDYDTEVVIEKYIQGDEI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC ++   +L V  I  P ++F+ Y  KY+   S  ++  ++   + ++V+++     + 
Sbjct: 181 TCCMLKGKTLPVIAIK-PNAEFFDYTAKYADGGSDEIV-VELEKSLQEKVEKICVQCWEV 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           + C+  +R D + +  +   + LE+N  PG+T  S+FP+ A     SF +LL
Sbjct: 239 LKCKSYARVDIIVE--NGIPYVLELNTLPGLTKNSLFPKSARGIDMSFTQLL 288


>gi|20136383|gb|AAM11649.1|AF492457_1 D-alanine:D-alanine ligase [Azospirillum brasilense]
          Length = 209

 Score =  162 bits (410), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 80/187 (42%), Positives = 123/187 (65%), Gaps = 17/187 (9%)

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
           H +  PY++KP+  GS++G+ ++++ Q+ P+      +W  G++ L+E+++ G ELT GV
Sbjct: 27  HPMPAPYIVKPVDEGSTVGVTLVREGQNSPV----GDAWTFGERALVEEFIPGRELTVGV 82

Query: 182 MGD-----ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           MG        L VTEI   ++  Y Y  KYS+ ++ H +PA+IP  + +E +RLA LAH+
Sbjct: 83  MGGLDGECRPLTVTEIRF-EAQVYDYTAKYSAGHAVHTVPAQIPEHVAEEAKRLAVLAHR 141

Query: 237 AIGCRGISRSDFLFDPLSRK-----VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
            +GCRG+SRSDF +D   RK     +F+LEIN QPGMTP+S+ PE AA  G ++  L+ W
Sbjct: 142 TLGCRGVSRSDFRWD--DRKSGTDGLFFLEINNQPGMTPLSLVPEQAASVGLTYGALVAW 199

Query: 292 MVEDASC 298
           MVE+A+C
Sbjct: 200 MVENAAC 206


>gi|329927923|ref|ZP_08281951.1| D-ala D-ala ligase N-terminal domain protein [Paenibacillus sp.
           HGF5]
 gi|328938142|gb|EGG34538.1| D-ala D-ala ligase N-terminal domain protein [Paenibacillus sp.
           HGF5]
          Length = 305

 Score =  162 bits (410), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 100/297 (33%), Positives = 164/297 (55%), Gaps = 9/297 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGG+SSEREVSL +GK   + L+ + ++V  I++     L+      D+A   LHG
Sbjct: 3   VGVIMGGVSSEREVSLMTGKEMIAHLDKSRYEVYPIEIHDKRELISKTEGIDIALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN---RFT 117
            FGEDG VQ  L+ L IPYT SG+LAS+L MDK  SK+++   G+     I+V+      
Sbjct: 63  AFGEDGTVQGTLDTLGIPYTGSGVLASSLCMDKDLSKKLLRYEGLHTADWIMVSCMEELA 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
                 +  P V+KP  GGSS+G  +++    +   + ++  W+    ++IEQ+++G E+
Sbjct: 123 AADVEGLGFPVVVKPNAGGSSIGTRIVRDSAGLASAVEEALRWDR--FVMIEQWIEGEEI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC V+    L +  I  P S+F+ Y  KY    +   +  ++P ++ ++V+  A   ++A
Sbjct: 181 TCPVLNGDMLPIVSIK-PNSEFFDYASKYEEGEADEQV-IELPTELQEQVRTAALQCYKA 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           + C   +R D +     +  + LE+N  PG+T  S+ P  A  AGYSF  LL  ++E
Sbjct: 239 MKCSVYARIDIILK--GKIPYILEVNTLPGLTKTSLLPRSAEAAGYSFSGLLDALIE 293


>gi|62259612|gb|AAX77863.1| unknown protein [synthetic construct]
          Length = 331

 Score =  162 bits (410), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 108/299 (36%), Positives = 164/299 (54%), Gaps = 12/299 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59
           + VL GG S EREVSL SGKA   +L   G+    +D   + +   L  LKPD  F  LH
Sbjct: 32  IVVLYGGDSPEREVSLKSGKAVLDSLISQGYDAVGVDASGKELVAKLLELKPDKCFVALH 91

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV-CPSILVNRFTM 118
           G  GE+G V A+LE+LEI +T S + +S ++MDKM SK+++    +P      L ++   
Sbjct: 92  GEDGENGRVSALLEMLEIKHTSSSMKSSVITMDKMISKEILMHHRMPTPMAKFLTDKLVA 151

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           + +  IS P  +KP  GGSS+    +K  Q +     ++S +    +++IEQ+V G E+T
Sbjct: 152 EDE--ISFPVAVKPSSGGSSIATFKVKSIQELKHAYEEASKYG---EVMIEQWVTGKEIT 206

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             ++ D       I  P+++FY YE KYS  +  H  P+ +      EV++LA  A+  +
Sbjct: 207 VAIVNDEVYSSVWIE-PQNEFYDYESKYSGKSIYHS-PSGLCEQKELEVRQLAKKAYDLL 264

Query: 239 GCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           GC G +R DF++D   R  F+ +EIN  PGMT  S+ P+ AA  G  F   +  ++E A
Sbjct: 265 GCSGHARVDFIYD--DRGNFYIMEINSSPGMTDNSLSPKSAAAEGVDFDSFVKRIIEQA 321


>gi|226953385|ref|ZP_03823849.1| D-alanine-D-alanine ligase [Acinetobacter sp. ATCC 27244]
 gi|294651908|ref|ZP_06729198.1| D-alanine-D-alanine ligase [Acinetobacter haemolyticus ATCC 19194]
 gi|226835862|gb|EEH68245.1| D-alanine-D-alanine ligase [Acinetobacter sp. ATCC 27244]
 gi|292822231|gb|EFF81144.1| D-alanine-D-alanine ligase [Acinetobacter haemolyticus ATCC 19194]
          Length = 308

 Score =  162 bits (410), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 107/300 (35%), Positives = 165/300 (55%), Gaps = 14/300 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-VDRSVGLVLAHLKPDLAFNVLH 59
           +AVL+GG S+ER VSL SG+A   AL  +G +    D  +RSV  ++A+   D AF VLH
Sbjct: 10  VAVLLGGKSAERAVSLDSGQAVLEALLRSGVQAEAFDPQERSVTELVAY---DRAFIVLH 66

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G  GEDG +Q +LE L IPYT +G+  SA+ MDK+++KQ+     +P  P  ++ + T D
Sbjct: 67  GRGGEDGQIQGVLEWLNIPYTGTGVQGSAIGMDKVKTKQIWQGSDLPTAPYRIITKDT-D 125

Query: 120 SQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
              +I+    P +IKP+  GSS+G+  ++K +     + ++++  H   ++ E+++ G E
Sbjct: 126 LDAVIADLGLPVIIKPVHEGSSVGMSKVEKTEDFAAAIAKATA--HDAVVMAEKWITGRE 183

Query: 177 LTCGVMGDASLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
            T   +    L V  +  P    FY YE KY   +  + +P  +     K +Q L   A 
Sbjct: 184 FTISFLNGQPLPVIRLQPPADVAFYDYEAKYQRNDVEYGIPCGLSEAEEKTLQALCLRAF 243

Query: 236 QAIGCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           QA+G  G  R D + D   +  FW LE+N  PGMT  S+ P+ A   GYSF  L + ++E
Sbjct: 244 QAVGAEGWGRIDAMQD--EQGNFWLLEVNTVPGMTSHSLVPKAAQAVGYSFDALCVAILE 301


>gi|209519097|ref|ZP_03267903.1| D-alanine/D-alanine ligase [Burkholderia sp. H160]
 gi|209500469|gb|EEA00519.1| D-alanine/D-alanine ligase [Burkholderia sp. H160]
          Length = 313

 Score =  162 bits (410), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 104/304 (34%), Positives = 169/304 (55%), Gaps = 19/304 (6%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-VDRSVGLVLAHLKPD---LAFN 56
           +AVL+GG S+EREVSL+SG+     L DAG      D  +R     L+ LK +    AFN
Sbjct: 12  VAVLLGGNSAEREVSLNSGRLVLQGLRDAGVDAHPFDPAERP----LSALKEEGFVRAFN 67

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR- 115
            LHG +GE+G +Q  L+   I YT SG+L SAL +DK R+K V    G+P  P   V R 
Sbjct: 68  ALHGGYGENGQIQGALDFYGIRYTGSGVLGSALGLDKFRTKLVWQQLGIPTPPFEAVLRG 127

Query: 116 --FTMDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
             +   +Q +++    P  +KP   GSS+ +I +K   ++P  L+++  ++    +++E+
Sbjct: 128 DDYEARAQEIVAKLGLPLFVKPASEGSSVAVIKVKSADALPAALIEAVKYDR--IVVVEK 185

Query: 171 YVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
            ++ G E T  + G+  L V  I VP  +FY Y  KY + ++ +++P  +  +    ++ 
Sbjct: 186 SIEGGGEYTACIAGNLDLPVIRI-VPAGEFYDYHAKYIANDTQYLIPCGLGAEEEARLKV 244

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           LA  A   +GC    R+DF+ D    K ++LE+N  PGMT  S+ P+ A   G S++EL+
Sbjct: 245 LARRAFDVLGCTDWGRADFMLDG-EGKPYFLEVNTAPGMTDHSLPPKAARAVGISYQELV 303

Query: 290 LWMV 293
           + ++
Sbjct: 304 VGVL 307


>gi|261408448|ref|YP_003244689.1| D-alanine--D-alanine ligase [Paenibacillus sp. Y412MC10]
 gi|261284911|gb|ACX66882.1| D-alanine/D-alanine ligase [Paenibacillus sp. Y412MC10]
          Length = 305

 Score =  162 bits (410), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 100/297 (33%), Positives = 164/297 (55%), Gaps = 9/297 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGG+SSEREVSL +GK   + L+ + ++V  I++     L+      D+A   LHG
Sbjct: 3   VGVIMGGVSSEREVSLMTGKEMIAHLDKSRYEVYPIEIHDKRELISKTEGIDIALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN---RFT 117
            FGEDG VQ  L+ L IPYT SG+LAS+L MDK  SK+++   G+     I+V+      
Sbjct: 63  AFGEDGTVQGTLDTLGIPYTGSGVLASSLCMDKDLSKKLLRYEGLHTADWIMVSCMEELA 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
                 +  P V+KP  GGSS+G  +++    +   + ++  W+    ++IEQ+++G E+
Sbjct: 123 AADVEGLGFPVVVKPNAGGSSIGTRIVRDSAGLASAVEEALRWDR--FVMIEQWIEGEEI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC V+    L +  I  P S+F+ Y  KY    +   +  ++P ++ ++V+  A   ++A
Sbjct: 181 TCPVLNGDMLPIVSIK-PNSEFFDYASKYEEGEADEQV-IELPTELQEQVRTAALQCYKA 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           + C   +R D +     +  + LE+N  PG+T  S+ P  A  AGYSF  LL  ++E
Sbjct: 239 MKCSVYARIDIILK--GKIPYILEVNTLPGLTKTSLLPRSAEAAGYSFSGLLDALIE 293


>gi|332710922|ref|ZP_08430858.1| D-alanine--D-alanine ligase [Lyngbya majuscula 3L]
 gi|332350236|gb|EGJ29840.1| D-alanine--D-alanine ligase [Lyngbya majuscula 3L]
          Length = 348

 Score =  162 bits (409), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 109/341 (31%), Positives = 182/341 (53%), Gaps = 51/341 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASAL---EDAG-FKVSQIDVDR--------SVGLVLAH 48
           + +L GG+S E EVS+SS +A A+AL   E+A  ++V  + + +        ++  VL  
Sbjct: 6   VGLLFGGVSGEHEVSISSARAIANALCADENASKYEVVPVYIQKNGIWTAVETIAQVLDS 65

Query: 49  LKP-------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
             P                   D+ F +LHG  GEDG VQ +L+L+ +P+  SG+L SA+
Sbjct: 66  GTPLESAPSGNVWQFPAVVSEVDVWFPILHGPNGEDGTVQGLLKLMGVPFVGSGVLGSAV 125

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------------QHLISPPYVIKPLKGGS 137
            MDK+  K V +  G+P    + V R  + S            +  ++ PY +KP   GS
Sbjct: 126 GMDKLVMKTVYAQAGLPQVKYMEVLRSQVWSDPCVFTKLCDQIEETLNYPYFVKPANLGS 185

Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD----ASLDVTEIA 193
           S+GI  ++    +   L +++S++   +L++E+ V G E+ C V+G+    AS+ V EI 
Sbjct: 186 SVGIAKVRSRSELEAALDKAASYDR--RLIVEEGVVGREVECAVLGNDHPKASV-VGEIT 242

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
             +SDFY YE KY+   +  ++PA +P D+  ++Q +A  A  A+   G+ R DF +   
Sbjct: 243 Y-ESDFYDYETKYTQGQADLLIPAPLPTDVITQIQEMAIQAFTAVDGAGLGRVDFFYVEA 301

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           +R++F  EIN  PG T  S++P++ A  G SF EL+  +++
Sbjct: 302 TREIFINEINTLPGFTATSMYPQLWAATGVSFPELVDQLIQ 342


>gi|218781084|ref|YP_002432402.1| D-alanine/D-alanine ligase [Desulfatibacillum alkenivorans AK-01]
 gi|218762468|gb|ACL04934.1| D-alanine/D-alanine ligase [Desulfatibacillum alkenivorans AK-01]
          Length = 320

 Score =  162 bits (409), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 109/311 (35%), Positives = 169/311 (54%), Gaps = 28/311 (9%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVS----QIDVDRSVGLVLAHLKP--DLA 54
           +A+L GG S+EREVS+ SG    +AL+   F V     +ID+ R     L H  P  D+A
Sbjct: 6   LALLFGGASAEREVSILSGTQVLNALDKDRFIVRCYDPKIDIPR-----LVHDAPNIDVA 60

Query: 55  FNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
             +LHG +GEDG +Q +L++L+IPY  SG+L SA+SM K+ SKQ+    G+   P  +V 
Sbjct: 61  VVMLHGEYGEDGRIQGLLDMLDIPYQGSGVLGSAVSMSKLASKQLYEQAGIKTPPYRVV- 119

Query: 115 RFTMDSQH-------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL 167
             + D++H        +  P  +KP  GGSS+G+ ++K      LD    + +     LL
Sbjct: 120 --SPDNRHEAANLADQVGYPLFVKPCMGGSSIGMSLVKGPAD--LDKALDAGFAEDPVLL 175

Query: 168 IEQYVDGIELTCGVMGDASLDVTEI--AVPKSD--FYSYELKYSSLNSTHVLPAKIPLDI 223
           +E  V G+E+T  V+G+  L+   +   VP  +  F+ Y  KY +  S  + PA+I  + 
Sbjct: 176 LEACVTGVEITGAVLGNDELEALPLIEIVPGEEFAFFEYGAKYEAGKSEEICPARISEEG 235

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283
            ++   L+  AH+A+ C+G SR+D + D     +  LE N  PGMT  S+ P+ A  AG 
Sbjct: 236 AQKAMDLSKQAHKALFCKGYSRTDMILDK-DGALHVLETNTIPGMTANSLLPKAAKVAGM 294

Query: 284 SFRELLLWMVE 294
            F  L+  +V+
Sbjct: 295 DFTALMSRLVD 305


>gi|154250263|ref|YP_001411088.1| D-alanyl-alanine synthetase A [Fervidobacterium nodosum Rt17-B1]
 gi|171769403|sp|A7HNE8|DDL_FERNB RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|154154199|gb|ABS61431.1| D-alanine--D-alanine ligase [Fervidobacterium nodosum Rt17-B1]
          Length = 316

 Score =  162 bits (409), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 108/316 (34%), Positives = 173/316 (54%), Gaps = 26/316 (8%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP-DLAFNVLH 59
           + VL+GGIS ERE+S+ SGK  A AL + G  V +IDVD +    L+ LK  D  FN+LH
Sbjct: 3   LGVLLGGISREREISIRSGKRIAQALRNMGHVVDEIDVDDNFIYKLSELKKYDALFNILH 62

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDK----------MRSKQVVSSCGVPVCP 109
           G FGEDG +QAIL+ + IPYT SG+  S ++ DK          +   + +S   +P   
Sbjct: 63  GTFGEDGKMQAILDSIGIPYTGSGVETSVIAFDKYLCNLFVENTIERYEELSVVKIPNFL 122

Query: 110 SILVNRFTMDSQHLISP----PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
            I    F     ++I      P V+KP K GSS+G  +    + + LD L++   N+ D+
Sbjct: 123 LISSEEFEESKIYMIEEKIGLPCVVKPRKEGSSIGTHICFSKEEL-LDALKNEFKNY-DE 180

Query: 166 LLIEQYVDGIELTCGVMG----DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL 221
           +++++Y+ G E+T  V+        L + E+  PK  FY YE KY+   +  ++PA++  
Sbjct: 181 MIVQEYIKGKEITVSVIDINGTPTVLPILELR-PKKLFYDYEAKYTDGMTEFIIPAELDG 239

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAY 280
           +  +++       ++++GC+  SR D +   +   VF+ LE+N  PGMT +S  P  A  
Sbjct: 240 ETTEKINHAVLKIYKSLGCKHFSRIDGI---VKDGVFYFLEVNTLPGMTELSDLPMSANA 296

Query: 281 AGYSFRELLLWMVEDA 296
            G SF EL+  ++++A
Sbjct: 297 FGISFDELVDLIIKEA 312


>gi|256827952|ref|YP_003156680.1| D-alanine/D-alanine ligase [Desulfomicrobium baculatum DSM 4028]
 gi|256577128|gb|ACU88264.1| D-alanine/D-alanine ligase [Desulfomicrobium baculatum DSM 4028]
          Length = 302

 Score =  162 bits (409), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 105/294 (35%), Positives = 154/294 (52%), Gaps = 5/294 (1%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSV-GLVLAHLKPDLAFNVLHGN 61
           ++ GG S EREV+LS  +     L   G +V+  D  R + GL  A    + AF  LHG+
Sbjct: 5   LIAGGWSGEREVALSGARQIEKGLLTLGHQVTHFDPARDLRGLYEAAAGHEFAFINLHGS 64

Query: 62  FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV-NRFTMDS 120
            GEDGLVQ +LE + +PY  S   AS L+++K  SKQ+  + G+P      V      + 
Sbjct: 65  PGEDGLVQCLLERIGMPYQGSDSRASLLALNKAVSKQIFEAAGLPTPAWEFVPASHVAEW 124

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           + L+  P V+KP  GGSSLG+ ++  +  +   L Q      G  LL E  + G ELTCG
Sbjct: 125 RPLLPFPLVVKPNTGGSSLGVGIVASEDELEAYLAQPEI--AGQDLLAEALIRGQELTCG 182

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V+    L    I     +F+ YE KY +  +  + PA IP ++ + +Q +A  AH A+G 
Sbjct: 183 VLEGCVLPPILIRPKSGEFFDYESKYVAGATEEICPAPIPAELTERLQVMARAAHDALGL 242

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
              SR+DF+        + LE+N  PGMT  S+ P+ A   G SF +LL  ++E
Sbjct: 243 SDYSRADFMVT-ADGMPYLLEVNTLPGMTATSLLPQEAQAVGLSFEQLLTRLIE 295


>gi|71066304|ref|YP_265031.1| D-alanine--D-alanine ligase [Psychrobacter arcticus 273-4]
 gi|71039289|gb|AAZ19597.1| D-alanine--D-alanine ligase [Psychrobacter arcticus 273-4]
          Length = 366

 Score =  162 bits (409), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 105/298 (35%), Positives = 160/298 (53%), Gaps = 13/298 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AV+ GG S+ER VSL SG A   AL++ G   +  D        L     D  FNVLHG
Sbjct: 72  VAVIYGGNSNERSVSLDSGAAVLQALQNQGVDATHFDPKHQDITELRQY--DRVFNVLHG 129

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDGL+Q +L+  +IP T SGILASAL MDK+R+KQ+   CG+   P  ++   T D 
Sbjct: 130 RGGEDGLLQGVLQWFDIPQTGSGILASALGMDKVRTKQLWQGCGLSTAPFSILTAET-DW 188

Query: 121 QHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
           Q +++    P +IKP+  GSS+G+  +     +P     +++   GD ++ E+++ G E 
Sbjct: 189 QQIVNMLGLPLIIKPVHEGSSIGMTKVSHLDELP--AAYATAIQCGDVVMAERWITGREF 246

Query: 178 TCGVMGDASLDVTEIAVPK-SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           T  ++ D +  V  +     ++FY +E KY+  ++++ +P  +     K +Q L+  A +
Sbjct: 247 TIVIIDDEAYPVIRLEPADITNFYDFEAKYNRNDTSYYIPCGLSAIDEKHLQALSLSAFR 306

Query: 237 AIGCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           A+  +G  R D + D      FW LEIN  PGMT  S+ P  A   G  F E L W +
Sbjct: 307 AVEAKGWGRIDAMQDEAGN--FWLLEINTVPGMTSHSLVPMAAKARGIDF-ESLCWHI 361


>gi|152996625|ref|YP_001341460.1| D-alanine--D-alanine ligase [Marinomonas sp. MWYL1]
 gi|190359163|sp|A6VYJ6|DDL_MARMS RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|150837549|gb|ABR71525.1| D-alanine--D-alanine ligase [Marinomonas sp. MWYL1]
          Length = 317

 Score =  162 bits (409), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 109/306 (35%), Positives = 166/306 (54%), Gaps = 15/306 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV-----LAHLKPDLAF 55
           +AV+ GG S+EREVSL SG   A  L   G++V ++D+  S   +     L  ++ DLAF
Sbjct: 10  IAVIYGGRSAEREVSLQSGPLVAEGLRAKGYQVVELDLYGSNAALDPIVQLQSIEFDLAF 69

Query: 56  NVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL--V 113
             LHG  GEDG VQA+LE+   PYT S  LA  L+MDK+ +K+  +  G+P  P+ L  V
Sbjct: 70  IALHGGEGEDGRVQALLEMFGKPYTGSSPLACGLAMDKVLTKRFWNGIGIP-TPAYLSFV 128

Query: 114 NRFTMD-SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
           +    D  +  +S P ++KP + GS++GI   K      LD     +  +   +L+E+++
Sbjct: 129 DHANADLIEEQMSYPVIVKPSREGSTIGI--NKAMNRAELDDALIKALEYDSDILVEEFI 186

Query: 173 DGIELTCGVMGDASLDVTEIA-VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           DG E T  V+ D +     +   P    Y YE KY + ++ ++LP  +  D   E+Q LA
Sbjct: 187 DGPEFTVTVIDDVAYPPIGLKPAPDHKLYDYEAKYIADDTEYLLPCGLDEDDENELQMLA 246

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             A++++GC G  R D + D     VFW LE+N  PGMT  S+ P  A Y G  +  L+ 
Sbjct: 247 LDAYRSLGCFGWGRVDVMRD--QAGVFWVLEVNTAPGMTSHSLVPMAAKYVGIDYASLVE 304

Query: 291 WMVEDA 296
            + ++A
Sbjct: 305 KIAQNA 310


>gi|261855073|ref|YP_003262356.1| D-alanine/D-alanine ligase [Halothiobacillus neapolitanus c2]
 gi|261835542|gb|ACX95309.1| D-alanine/D-alanine ligase [Halothiobacillus neapolitanus c2]
          Length = 324

 Score =  162 bits (409), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 105/298 (35%), Positives = 164/298 (55%), Gaps = 19/298 (6%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSV--GLVLAH-LKP-DLAFNVL 58
           +L+GG SSER +SL SG+    AL+ AG  V+ +DV R     L+ AH  KP D AF +L
Sbjct: 12  LLLGGWSSERVISLKSGETVLGALQRAGIDVTAMDVRRDFLPELLAAHQAKPFDRAFIIL 71

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV----- 113
           HG  GEDG +QA+LELL IPYT + +  SA+ MDK+  K++    G+P  P  +V     
Sbjct: 72  HGRGGEDGQIQAVLELLGIPYTGTSMGGSAIGMDKLACKRIWRGEGLPTPPWAVVATEIE 131

Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
               +DS  L   P ++KP+  GSS+G+  + +   +     +++ +    Q+++E+Y+ 
Sbjct: 132 AHRALDSLGL---PVMVKPVAEGSSVGVAKVDQPDQLAAAFREAARYG---QVMMERYIR 185

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           G E T  ++G  +L V  ++ P  DFY ++ KY + ++ + +P+ +  +    +Q +A  
Sbjct: 186 GGEYTVSLLGGRALPVIRLSTPH-DFYDFDAKYLANDTEYTIPSGLSAEEESAMQAIALK 244

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWL-EINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A + IG  G  R DF+ D   +   WL E+N  PGMT  S+ P  A   G    EL L
Sbjct: 245 AFEQIGGSGWGRVDFMRDEHGQN--WLIEVNTVPGMTDHSLVPMAARAVGIEIEELCL 300


>gi|90020497|ref|YP_526324.1| D-alanine--D-alanine ligase [Saccharophagus degradans 2-40]
 gi|122996461|sp|Q21MG7|DDL_SACD2 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|89950097|gb|ABD80112.1| D-alanine--D-alanine ligase [Saccharophagus degradans 2-40]
          Length = 314

 Score =  161 bits (408), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 107/295 (36%), Positives = 159/295 (53%), Gaps = 16/295 (5%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62
           VL GG SSEREVSL SG A   AL+  G     +DV       +    PD  F  LHG  
Sbjct: 21  VLFGGTSSEREVSLRSGAAVLQALQAGGVDAHGLDVQADAIAKIEAFAPDRVFIALHGPG 80

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV--PVCPSILVN---RFT 117
           GEDG +QA+L+ L IPYT S   ASAL+MDK+++KQV  S G+  P   S++ N   +  
Sbjct: 81  GEDGKMQAVLDWLAIPYTGSDHAASALAMDKLKTKQVWQSVGLVTPEYASLVENSDWQAV 140

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
           +DS   +     +KP   GSS+G+ V+   Q +     +++ ++   ++L+E+ + G E 
Sbjct: 141 LDS---LGGQGFVKPAHEGSSIGMSVVSTAQELKAAYEKAAHYDA--KVLVERRIVGREF 195

Query: 178 TCGVMGDASLDVTEIAVPKSD--FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
           T  V+   +L    +   K+D  FY Y+ KY S  + ++ P  +  +   E+Q +A  A 
Sbjct: 196 TVAVLNGVALPAIGL---KTDHVFYDYDAKYVSNTTQYLCPCGLTQEKEAELQSIAQQAF 252

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
            A+GC+G  R DF+ D  +   + LE+N  PGMT  S+ P  A  +G  F EL+L
Sbjct: 253 AAVGCKGWGRVDFMQDE-AGNFYLLEVNTVPGMTDHSLVPMAARQSGIEFNELVL 306


>gi|326564830|gb|EGE15038.1| D-alanine--D-alanine ligase [Moraxella catarrhalis 12P80B1]
 gi|326566495|gb|EGE16642.1| D-alanine--D-alanine ligase [Moraxella catarrhalis 103P14B1]
 gi|326571235|gb|EGE21258.1| D-alanine--D-alanine ligase [Moraxella catarrhalis BC8]
 gi|326577220|gb|EGE27113.1| D-alanine--D-alanine ligase [Moraxella catarrhalis 101P30B1]
          Length = 307

 Score =  161 bits (408), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 108/298 (36%), Positives = 164/298 (55%), Gaps = 12/298 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-VDRSVGLVLAHLKP-DLAFNVL 58
           +AV+ GG S+EREVSL+SG A  +AL   G      D  D  +    +HL+  D  FNVL
Sbjct: 15  VAVICGGTSTEREVSLNSGMAVLNALLSKGVDAHHFDPADTDI----SHLRAYDRVFNVL 70

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
           HG FGEDG +Q +L+   +PYT  G+LASA++MDK R + +  S G+P  P ++++  + 
Sbjct: 71  HGTFGEDGSLQGVLDGFNLPYTGCGVLASAIAMDKFRCRLLWQSLGLPNVPYVVLHDDSD 130

Query: 119 DS--QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
            S  +     P  +KP   GSS+G+ ++  +Q+  L  +      +  ++L E+ + G E
Sbjct: 131 FSAVEREFGLPLFVKPAAEGSSVGVFMV--EQAGDLAKIYPKLKQYHGEILAEKAMMGGE 188

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
               ++G+  L    I +PK  FY YE KY   ++ +  P+ +  +  +++  LA  A +
Sbjct: 189 YAIPLLGEQVLPSIRI-IPKGKFYDYEAKYLRDDTIYQCPSDLTPEQERQMGELALKAFR 247

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           AIG RG SR DFL      K++ LEIN  PGMT  S+ P  A  AG  F EL L ++ 
Sbjct: 248 AIGGRGWSRVDFL-KGHDGKLYVLEINTVPGMTDHSLVPMAAKEAGIGFDELCLQILR 304


>gi|326561547|gb|EGE11890.1| D-alanine--D-alanine ligase [Moraxella catarrhalis 7169]
 gi|326570679|gb|EGE20713.1| D-alanine--D-alanine ligase [Moraxella catarrhalis BC1]
 gi|326573082|gb|EGE23055.1| D-alanine--D-alanine ligase [Moraxella catarrhalis CO72]
 gi|326577785|gb|EGE27657.1| D-alanine--D-alanine ligase [Moraxella catarrhalis O35E]
          Length = 333

 Score =  161 bits (408), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 108/298 (36%), Positives = 164/298 (55%), Gaps = 12/298 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-VDRSVGLVLAHLKP-DLAFNVL 58
           +AV+ GG S+EREVSL+SG A  +AL   G      D  D  +    +HL+  D  FNVL
Sbjct: 41  VAVVCGGTSTEREVSLNSGMAVLNALLSKGVDAHHFDPADTDI----SHLRAYDRVFNVL 96

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
           HG FGEDG +Q +L+   +PYT  G+LASA++MDK R + +  S G+P  P ++++  + 
Sbjct: 97  HGTFGEDGSLQGVLDGFNLPYTGCGVLASAIAMDKFRCRLLWQSLGLPNVPYVVLHDDSD 156

Query: 119 DS--QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
            S  +     P  +KP   GSS+G+ ++  +Q+  L  +      +  ++L E+ + G E
Sbjct: 157 FSAVEREFGLPLFVKPAAEGSSVGVFMV--EQAGDLAKIYPKLKQYHGEILAEKAMMGGE 214

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
               ++G+  L    I +PK  FY YE KY   ++ +  P+ +  +  +++  LA  A +
Sbjct: 215 YAIPLLGEQVLPSIRI-IPKGKFYDYEAKYLRDDTIYQCPSDLTPEQERQMGELALKAFR 273

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           AIG RG SR DFL      K++ LEIN  PGMT  S+ P  A  AG  F EL L ++ 
Sbjct: 274 AIGGRGWSRVDFL-KGHDGKLYVLEINTVPGMTDHSLVPMAAKEAGIGFDELCLQILR 330


>gi|293392857|ref|ZP_06637175.1| D-alanine-D-alanine ligase B [Serratia odorifera DSM 4582]
 gi|291424716|gb|EFE97927.1| D-alanine-D-alanine ligase B [Serratia odorifera DSM 4582]
          Length = 306

 Score =  161 bits (408), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 110/306 (35%), Positives = 164/306 (53%), Gaps = 19/306 (6%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD---LAFNV 57
           +AVLMGG S+EREVSL SG A  + L +AG     ID   +    LA LK       F  
Sbjct: 5   VAVLMGGTSAEREVSLQSGAAVLAGLREAGIDAHGID---TRDFPLAQLKAQGFSKVFIA 61

Query: 58  LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117
           LHG  GEDG +Q +LE L++PYT SG++ASAL+MDK R+K V  S G+P+ P + ++R  
Sbjct: 62  LHGRGGEDGTLQGMLEFLDLPYTGSGVMASALTMDKWRTKMVWQSMGLPIAPYVALHRAE 121

Query: 118 M----DSQHLISP-----PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168
                 SQ L S      P ++KP + GSS+G+  + +   +   L    ++ H D +L+
Sbjct: 122 FVGEAKSQLLASVEALGLPLIVKPSREGSSVGMSKVSEFGELVAAL--DEAFRHDDDVLV 179

Query: 169 EQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           E+++ G E T   +GD  +    I  P   FY Y+ KY S ++ +  P+ +  +   E+ 
Sbjct: 180 EKWLSGPEYTVAFLGDQLMPSIRIQ-PAGVFYDYQAKYISDDTQYFCPSGLSAEQESELA 238

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
            LA  A++ + C G  R D + D      + LE+N  PGMT  S+ P  A   G  F +L
Sbjct: 239 ALAARAYRGLDCSGWGRVDVMQDN-DGSFYLLEVNTSPGMTSHSLVPMAARQFGLDFSQL 297

Query: 289 LLWMVE 294
           +  ++E
Sbjct: 298 VARILE 303


>gi|332977768|gb|EGK14528.1| D-alanine-D-alanine ligase B [Psychrobacter sp. 1501(2011)]
          Length = 330

 Score =  161 bits (408), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 105/298 (35%), Positives = 161/298 (54%), Gaps = 13/298 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AV+ GG S+ER+VSL+SG A   AL+  G + +  D        L +   D  FNVLHG
Sbjct: 36  VAVVYGGSSNERDVSLNSGNAVLKALQSQGVEATHFDPKHQDVTELKNY--DRVFNVLHG 93

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +L+ L+IP T SG+LASA+ MDK+R+KQ+   CG+   P  ++ + T D 
Sbjct: 94  RGGEDGQLQGLLDWLQIPQTGSGVLASAIGMDKVRTKQLWLGCGLSTAPFAVLTKDT-DW 152

Query: 121 QHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
           Q ++S    P ++KP+  GSS+G+  +     +P     +S    GD ++ E+++ G E 
Sbjct: 153 QQVVSALGLPLIVKPVHEGSSIGMSKVNTLDELPKAFELASG--CGDVVMAEKWIAGREF 210

Query: 178 TCGVMGDASLDVTEIA-VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           T  ++ D +  V  +     S+FY YE KY+  ++ + +P  +  +    +Q L+  A +
Sbjct: 211 TIVIIDDEAYPVIRLQPADVSNFYDYEAKYNRNDTMYHIPCGLSEEEETHLQALSLAAFK 270

Query: 237 AIGCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           A+   G  R D + D      FW LEIN  PGMT  S+ P  A   G  F E L W +
Sbjct: 271 AVDAEGWGRIDAMQD--ENGNFWLLEINTVPGMTSHSLVPMAAKARGMDF-EQLCWHI 325


>gi|312135724|ref|YP_004003062.1| d-alanine/d-alanine ligase [Caldicellulosiruptor owensensis OL]
 gi|311775775|gb|ADQ05262.1| D-alanine/D-alanine ligase [Caldicellulosiruptor owensensis OL]
          Length = 364

 Score =  161 bits (408), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 103/338 (30%), Positives = 178/338 (52%), Gaps = 51/338 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKAC-------------------------ASALEDAGFKVSQ 35
           +AVL GG+S+E E+SL S K+                             +ED   K +Q
Sbjct: 6   VAVLFGGVSTEHEISLVSAKSIMQNMDKEKYEIIPIGITKEGKWLLYTGKIEDLDSKWTQ 65

Query: 36  IDV------DRSVGLVL-------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
             +      DR+   ++         +  D+ F VLHG  GEDG VQ +LEL +IPY   
Sbjct: 66  FSIECFISPDRTKKALVKIKDNEATFIDIDVIFPVLHGLNGEDGTVQGLLELSDIPYVGC 125

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTMDSQHLI-------SPPYVIKPL 133
           G+L+SA+ MDK  +K++    G+P    ++V  N ++    + I       S P  +KP 
Sbjct: 126 GVLSSAICMDKAFAKKLALLEGIPQGHFLVVYKNEYSAKKDYFIRRIESEFSYPVFVKPA 185

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
             GSS+GI   K  + + L + ++  + +  ++LIEQ ++  E+ C V+G+  + V+E  
Sbjct: 186 NSGSSVGISKAKDREDLVLAIHEA--FLYDTKILIEQAINAREIECAVLGNDEVFVSEPG 243

Query: 194 --VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
             +P  +FYSYE KY   +S  ++PA++P ++ +E++ LA   ++   C G++R DF  D
Sbjct: 244 EIIPSREFYSYEAKYIDNSSELIIPARLPKEVTEEIKDLAVRIYKIFECCGMARVDFFVD 303

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
             + KV++ E+N  PG T +S++P++  ++G S+ +L+
Sbjct: 304 KDTNKVYFNEVNTIPGFTNISMYPKLMEFSGISYSQLI 341


>gi|326564128|gb|EGE14366.1| D-alanine--D-alanine ligase [Moraxella catarrhalis 46P47B1]
          Length = 307

 Score =  161 bits (408), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 108/298 (36%), Positives = 164/298 (55%), Gaps = 12/298 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-VDRSVGLVLAHLKP-DLAFNVL 58
           +AV+ GG S+EREVSL+SG A  +AL   G      D  D  +    +HL+  D  FNVL
Sbjct: 15  VAVICGGTSAEREVSLNSGMAVLNALLSKGVDAHHFDPADTDI----SHLRAYDRVFNVL 70

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
           HG FGEDG +Q +L+   +PYT  G+LASA++MDK R + +  S G+P  P ++++  + 
Sbjct: 71  HGTFGEDGSLQGVLDGFNLPYTGCGVLASAIAMDKFRCRLLWQSLGLPNVPYVVLHDDSD 130

Query: 119 DS--QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
            S  +     P  +KP   GSS+G+ ++  +Q+  L  +      +  ++L E+ + G E
Sbjct: 131 FSAVEREFGLPLFVKPAAEGSSVGVFMV--EQAGDLAKIYPKLKQYHGEILAEKAMMGGE 188

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
               ++G+  L    I +PK  FY YE KY   ++ +  P+ +  +  +++  LA  A +
Sbjct: 189 YAIPLLGEQVLPSIRI-IPKGKFYDYEAKYLRDDTIYQCPSDLTPEQERQMGELALKAFR 247

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           AIG RG SR DFL      K++ LEIN  PGMT  S+ P  A  AG  F EL L ++ 
Sbjct: 248 AIGGRGWSRVDFL-KGHDGKLYVLEINTVPGMTDHSLVPMAAKEAGIGFDELCLQILR 304


>gi|161526003|ref|YP_001581015.1| D-alanine--D-alanine ligase [Burkholderia multivorans ATCC 17616]
 gi|189349280|ref|YP_001944908.1| D-alanine--D-alanine ligase [Burkholderia multivorans ATCC 17616]
 gi|221202516|ref|ZP_03575546.1| D-alanine--D-alanine ligase B [Burkholderia multivorans CGD2M]
 gi|221208162|ref|ZP_03581167.1| D-alanine--D-alanine ligase B [Burkholderia multivorans CGD2]
 gi|221213275|ref|ZP_03586250.1| D-alanine--D-alanine ligase B [Burkholderia multivorans CGD1]
 gi|229463736|sp|A9AI94|DDL_BURM1 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|160343432|gb|ABX16518.1| D-alanine--D-alanine ligase [Burkholderia multivorans ATCC 17616]
 gi|189333302|dbj|BAG42372.1| D-alanine-D-alanine ligase [Burkholderia multivorans ATCC 17616]
 gi|221166727|gb|EED99198.1| D-alanine--D-alanine ligase B [Burkholderia multivorans CGD1]
 gi|221172065|gb|EEE04507.1| D-alanine--D-alanine ligase B [Burkholderia multivorans CGD2]
 gi|221177611|gb|EEE10028.1| D-alanine--D-alanine ligase B [Burkholderia multivorans CGD2M]
          Length = 313

 Score =  161 bits (408), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 106/301 (35%), Positives = 168/301 (55%), Gaps = 19/301 (6%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-VDRSVGLVLAHLKPD---LAFN 56
           +AVL GG S+EREVSL+SG+     L DAG      D  +R     L+ LK +    AFN
Sbjct: 12  VAVLFGGESAEREVSLTSGRLVLQGLRDAGVDAHPFDPAERP----LSALKDEGFVRAFN 67

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR- 115
            LHG +GE+G +Q  L+   I YT SG+L SAL +DK R+K V    GVP  P   V R 
Sbjct: 68  ALHGGYGENGQIQGALDFYGIRYTGSGVLGSALGLDKFRTKLVWQQTGVPTPPFETVMRD 127

Query: 116 --FTMDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
             +   +  +++    P  +KP   GSS+ ++ +K   ++P  L ++++  H   +++E+
Sbjct: 128 DDYAARATEIVAKLGLPLFVKPASEGSSVAVLKVKTADALPAALAEAAT--HDKIVIVEK 185

Query: 171 YVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
            ++ G E T  + GD  L + +I VP  +FY Y  KY + ++ +++P  +P D   +++R
Sbjct: 186 SIEGGGEYTACIAGDLDLPLIKI-VPAGEFYDYHAKYVADDTQYLIPCGLPADQEAQLKR 244

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           LA  A   +GC    R+DF+ D  +   ++LE+N  PGMT  S+ P+ A   G S+ EL+
Sbjct: 245 LARRAFDVLGCTDWGRADFMLD-AAGNAYFLEVNTAPGMTDHSLPPKAARAIGISYSELV 303

Query: 290 L 290
           +
Sbjct: 304 V 304


>gi|326568017|gb|EGE18109.1| D-alanine--D-alanine ligase [Moraxella catarrhalis BC7]
          Length = 307

 Score =  161 bits (408), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 108/298 (36%), Positives = 164/298 (55%), Gaps = 12/298 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-VDRSVGLVLAHLKP-DLAFNVL 58
           +AV+ GG S+EREVSL+SG A  +AL   G      D  D  +    +HL+  D  FNVL
Sbjct: 15  VAVVCGGTSTEREVSLNSGMAVLNALLSKGVDAHHFDPADTDI----SHLRAYDRVFNVL 70

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
           HG FGEDG +Q +L+   +PYT  G+LASA++MDK R + +  S G+P  P ++++  + 
Sbjct: 71  HGTFGEDGSLQGVLDGFNLPYTGCGVLASAIAMDKFRCRLLWQSLGLPNVPYVVLHDDSD 130

Query: 119 DS--QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
            S  +     P  +KP   GSS+G+ ++  +Q+  L  +      +  ++L E+ + G E
Sbjct: 131 FSAVEREFGLPLFVKPAAEGSSVGVFMV--EQAGDLAKIYPKLKQYHGEILAEKAMMGGE 188

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
               ++G+  L    I +PK  FY YE KY   ++ +  P+ +  +  +++  LA  A +
Sbjct: 189 YAIPLLGEQVLPSIRI-IPKGKFYDYEAKYLRDDTIYQCPSDLTPEQERQMGELALKAFR 247

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           AIG RG SR DFL      K++ LEIN  PGMT  S+ P  A  AG  F EL L ++ 
Sbjct: 248 AIGGRGWSRVDFL-KGHDGKLYVLEINTVPGMTDHSLVPMAAKEAGIGFDELCLQILR 304


>gi|323142001|ref|ZP_08076852.1| D-ala D-ala ligase N-terminal domain protein [Phascolarctobacterium
           sp. YIT 12067]
 gi|322413533|gb|EFY04401.1| D-ala D-ala ligase N-terminal domain protein [Phascolarctobacterium
           sp. YIT 12067]
          Length = 315

 Score =  161 bits (407), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 104/302 (34%), Positives = 164/302 (54%), Gaps = 18/302 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--LAHLKPDLAFNVL 58
           +AV++GG SSE E+S  +G A A+AL + G+   +++++ S  L+  L  +   + FN +
Sbjct: 9   VAVVLGGPSSEAEISRVTGGAIANALREKGYNAKEVELNPS-NLINELRDMNAKVVFNAV 67

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN-RFT 117
           HG +GEDG +Q+ILE   IPYT  G+LASA+SMDK  +K+ + S G+P  P +++N R  
Sbjct: 68  HGMYGEDGRLQSILEAAGIPYTGCGVLASAVSMDKSATKRYLQSAGIPTAPCMIINKRDA 127

Query: 118 MDSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            D Q L          P VIK    GSS+G+++ K  Q +   L +  ++ + + +L E+
Sbjct: 128 GDLQTLAEKIISEFGLPVVIKAATQGSSIGVVIPKTAQEVVPALEE--AFKYSENVLAEK 185

Query: 171 YVDGIELTCGVMGDAS----LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE 226
            + G ELT  +M +      L V  IA P S  Y +  KY+   + +  PA         
Sbjct: 186 CIKGKELTISIMEENGEPKPLPVIWIA-PHSGAYDFHSKYTKGATDYHCPAPFDEKTTAY 244

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           +Q++A   ++ +G  G++R D +        + LE N  PGMT  S+ P+ AA  G SF 
Sbjct: 245 IQKIAVETYKLLGLSGVARVDAMLGDEDGVAYVLEANTVPGMTATSLVPKAAAAVGISFP 304

Query: 287 EL 288
           EL
Sbjct: 305 EL 306


>gi|126665244|ref|ZP_01736227.1| D-alanylalanine synthetase [Marinobacter sp. ELB17]
 gi|126630614|gb|EBA01229.1| D-alanylalanine synthetase [Marinobacter sp. ELB17]
          Length = 342

 Score =  161 bits (407), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 107/303 (35%), Positives = 163/303 (53%), Gaps = 18/303 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AV MGG S+ER+VSL SG+A  SAL  AG     +DV   +   +   + D  F  LHG
Sbjct: 34  VAVFMGGDSAERDVSLKSGQAVLSALLSAGVNAFGVDVQGCLLKTVEQPEFDRVFIALHG 93

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +QAIL    IP+T S ++ASAL+MDK+R+K V + CG+   P         D+
Sbjct: 94  RGGEDGTLQAILSQAGIPFTGSDVMASALAMDKLRTKYVFAGCGL-ATPKFRTMASAEDA 152

Query: 121 QHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQL----LIEQYVD 173
             + +    P  +KP + GSS+GI  +        +L+Q  +W     L    L+E++++
Sbjct: 153 NSIAAELRMPLSVKPSREGSSIGICKVTSAG----ELVQ--AWQAAAALDTSVLVEEWIE 206

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           G E T  ++ D +L    ++     FY Y+ KY + ++ + +P  +  D    +Q+LA  
Sbjct: 207 GPEFTVSLLQDRALPAIGLSTDHV-FYDYDAKYLADDTRYCIPCGLSADEELRLQQLALE 265

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           A + +GCR   R D + D   +  FW LE+N  PGMT  S+ P  A  AG SF EL++ +
Sbjct: 266 AFRVVGCRTWGRVDIMQDADGK--FWLLEVNTVPGMTDHSLVPMSARAAGISFEELVVRI 323

Query: 293 VED 295
           + D
Sbjct: 324 LAD 326


>gi|56459549|ref|YP_154830.1| D-alanine--D-alanine ligase [Idiomarina loihiensis L2TR]
 gi|81363518|sp|Q5R0N1|DDL_IDILO RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|56178559|gb|AAV81281.1| D-alanine-D-alanine ligase B [Idiomarina loihiensis L2TR]
          Length = 309

 Score =  161 bits (407), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 102/295 (34%), Positives = 157/295 (53%), Gaps = 10/295 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AV++GG S+ER+VSL SG A    L   G      D        L   K D  F  LHG
Sbjct: 9   VAVMLGGTSAERDVSLKSGMAVLKGLVAKGIDAHAFDPAAHSLQELVEQKFDRVFIALHG 68

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q  L++LE+PYT S +L  AL MDK+R KQ+  S G+P     +V +  ++ 
Sbjct: 69  RGGEDGSMQGALQILEMPYTGSDVLGCALGMDKVRCKQIWHSVGLPTANWRVVTQAEIEQ 128

Query: 121 QHL------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
            ++      +    ++KP + GSS+G+ +    +S+ L L  ++ ++  D LL+EQ+V+G
Sbjct: 129 VNVEAMLQELGGRVIVKPAREGSSIGMSIADNGRSLALALQHAAEFD--DDLLVEQWVEG 186

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
            E T G++   +L V  +  P  +FY +E KY + ++ +  PA +  D    ++ LA  A
Sbjct: 187 AEYTIGILEGKALPVIRLQTPH-EFYDFEAKYQANDTQYHCPAGLSDDDEASLRTLAERA 245

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
             AIG  G  R D + +  + + F LE N  PGMT  S+ P  A  AG  F +L+
Sbjct: 246 FAAIGGSGWGRIDVMRNN-AGEWFLLEANTVPGMTEKSLVPMAAKVAGLQFNDLV 299


>gi|186477419|ref|YP_001858889.1| D-alanine--D-alanine ligase [Burkholderia phymatum STM815]
 gi|229463737|sp|B2JHF8|DDL_BURP8 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|184193878|gb|ACC71843.1| D-alanine--D-alanine ligase [Burkholderia phymatum STM815]
          Length = 313

 Score =  161 bits (407), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 104/301 (34%), Positives = 165/301 (54%), Gaps = 19/301 (6%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-VDRSVGLVLAHLKPD---LAFN 56
           +AVL+GG S+EREVSL+SG+     L DAG      D  +R     LA LK +    AFN
Sbjct: 12  VAVLLGGASAEREVSLNSGRLVLQGLRDAGVDAYAFDPAERP----LAALKDEGFVRAFN 67

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR- 115
            LHG +GE+G +Q  L+   I YT SG+L SAL +DK R+K V    G+P  P   V R 
Sbjct: 68  ALHGGYGENGQIQGALDFYGIRYTGSGVLGSALGLDKFRTKLVWQQLGIPTPPFEAVLRG 127

Query: 116 --FTMDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
             +   +Q +++    P  +KP   GSS+ +I +K   ++   L ++  ++    +++E+
Sbjct: 128 DDYAARAQGIVAKLGLPLFVKPASEGSSVAVIKVKTADALVPALEEAVKFDK--IVVVEK 185

Query: 171 YVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
            ++ G E T  + GD  L +  I VP  +FY Y  KY + ++ +++P  I  +    +++
Sbjct: 186 SIEGGGEYTACIAGDLDLPIIRI-VPAGEFYDYHAKYIANDTQYMIPCGIAAEEEARLKK 244

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           LA  A   +GC    R+DF+ D      ++LE+N  PGMT  S+ P+ A   G S++EL+
Sbjct: 245 LARQAFDVLGCTDWGRADFMLDG-EGNAYFLEVNTAPGMTDHSLPPKAARAVGISYQELV 303

Query: 290 L 290
           +
Sbjct: 304 V 304


>gi|167752136|ref|ZP_02424263.1| hypothetical protein ALIPUT_00378 [Alistipes putredinis DSM 17216]
 gi|167660377|gb|EDS04507.1| hypothetical protein ALIPUT_00378 [Alistipes putredinis DSM 17216]
          Length = 331

 Score =  161 bits (407), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 102/324 (31%), Positives = 172/324 (53%), Gaps = 32/324 (9%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40
           +A++ GG SSERE++L S    ASAL+ A + ++ ID+                    D 
Sbjct: 6   IALMAGGDSSEREIALQSAAQIASALDPAKYDITLIDLHGRDWHYTSPDGRQWQVDKNDF 65

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           S+ +   H   D A  ++HG  GE+G +Q  L+++ IPY+   + +S ++ DK+ +K+ V
Sbjct: 66  SITIDGEHKAFDYALILIHGTPGENGRLQGYLDMMGIPYSSCSMTSSVVTFDKITTKRTV 125

Query: 101 SSCGVPVCPSILVNRFT-MDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
           +  G+P+       R + +D + ++     P  +KP   GSS G+  +K +  I   + +
Sbjct: 126 AEFGIPLARGFFFGRDSRIDPKEIVRTLGLPVFVKPNASGSSFGVTKVKSEADILPAVAE 185

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNST 212
           +  +   D++LIE+ + G E+ CG++     +    +TEI V K +F+ YE KY++  S 
Sbjct: 186 A--FTESDEILIEECIQGREMGCGMLIAKGREYIFPITEI-VSKKEFFDYEAKYTAGCSD 242

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
            + PA I  +I  E+ RL  LA++A  CRG+ R DF+  P   K + +EIN  PGM+  S
Sbjct: 243 EITPADIAPEIKAELNRLTALAYKACRCRGVVRVDFIVTP-EGKPYLIEINSIPGMSGGS 301

Query: 273 IFPEMAAYAGYSFRELLLWMVEDA 296
           I P+    AG +  EL   ++ED 
Sbjct: 302 IVPKQVREAGMTLGELYDLIIEDT 325


>gi|145219530|ref|YP_001130239.1| D-alanine--D-alanine ligase [Prosthecochloris vibrioformis DSM 265]
 gi|229485976|sp|A4SE28|DDL_PROVI RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|145205694|gb|ABP36737.1| D-alanine--D-alanine ligase [Chlorobium phaeovibrioides DSM 265]
          Length = 361

 Score =  161 bits (407), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 110/342 (32%), Positives = 172/342 (50%), Gaps = 57/342 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS------------------- 41
           +A+L GG S+E E+S+ S ++ A  +    ++V  I + R+                   
Sbjct: 6   VALLFGGRSAEHEISIISAQSVARHINPDHYRVVPIYITRNGRWYSEGIASSILELDIAA 65

Query: 42  ----VGLVLAHLK-------------------PDLAFNVLHGNFGEDGLVQAILELLEIP 78
                G   A LK                    D+AF +LHG++GEDG +Q  L+ + IP
Sbjct: 66  LIRKSGTAAASLKLQEMVLASGQQPFSFTFAGIDIAFPILHGSYGEDGRIQGFLDTVAIP 125

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCP--SILVNRFTMDSQHLISP-------PYV 129
           YT  G+ ASAL+MDK  SK  VS  G+ V P  ++L   +    + ++S        P  
Sbjct: 126 YTGCGVTASALTMDKALSKLCVSEAGIAVAPGVTVLAGDWEKSPEQILSSIPETLIYPVF 185

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA---S 186
           +KP   GSS+GI  +     +P  L  + + N   ++LIEQ + G E+   V+G+    +
Sbjct: 186 VKPAHLGSSVGISKVSVQGELPEAL--AHACNLDTKVLIEQAMHGKEIEVAVLGNNDPIA 243

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRS 246
               EI  P SDFY Y+ KY    +   +PA++P ++ + VQ  A  A++A+GCRG++R 
Sbjct: 244 SACGEIE-PGSDFYDYDDKYIHNTAKLFIPARLPEELSRRVQADALTAYRALGCRGMARV 302

Query: 247 DFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           DF  D  S +V + EIN  PG T +S++P++   AG +F EL
Sbjct: 303 DFFVDEKSGQVVFNEINTIPGFTDISMYPQLMEAAGIAFPEL 344


>gi|18309801|ref|NP_561735.1| D-alanine--D-alanine ligase [Clostridium perfringens str. 13]
 gi|39931177|sp|Q8XM71|DDLB_CLOPE RecName: Full=D-alanine--D-alanine ligase B; AltName:
           Full=D-Ala-D-Ala ligase B; AltName: Full=D-alanylalanine
           synthetaseB
 gi|18144479|dbj|BAB80525.1| D-alanine-D-alanine ligase [Clostridium perfringens str. 13]
          Length = 302

 Score =  161 bits (407), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 96/297 (32%), Positives = 168/297 (56%), Gaps = 8/297 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + ++MGGISSEREVSL+SG++  + ++   ++VS+I ++  + ++      D A   LHG
Sbjct: 3   VGIIMGGISSEREVSLASGESIFNHIDKEKYEVSKIIINNKIDILEKVKGLDFALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF-TMD 119
            FGEDG VQA L++++IPY+  G L+S+L MDK  SK+V+ +  +     I V     +D
Sbjct: 63  KFGEDGTVQAFLDIMDIPYSGCGALSSSLCMDKNLSKKVLKAENIRTAKWITVKSIEEID 122

Query: 120 SQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            + +  I  P  +KP  GGSS+    + K + I   +++   ++  ++++IE ++ G E+
Sbjct: 123 YEKIEEIGYPVFVKPNNGGSSVATFKVYKKEDIKNSVMEGLKYD--EEVIIESFIKGREI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC +       + EI   K+DFY Y+ KY++  + H LP ++   +Y EV+ +A    + 
Sbjct: 181 TCPIFNGELFPILEIK-SKADFYDYKQKYAANGAEH-LPVQLEKSLYDEVKEMALKTFEV 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           + C   +R D +        + LE+N  PGMT  S+FP+ A   G S+ + +  ++E
Sbjct: 239 LKCEVYARVDMIISEEGVP-YILEVNTLPGMTATSLFPQSAESRGISYSKFIDLIIE 294


>gi|189219419|ref|YP_001940060.1| D-alanine-D-alanine ligase [Methylacidiphilum infernorum V4]
 gi|229485964|sp|B3DVV9|DDL_METI4 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|189186277|gb|ACD83462.1| D-alanine-D-alanine ligase [Methylacidiphilum infernorum V4]
          Length = 303

 Score =  161 bits (407), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 106/296 (35%), Positives = 156/296 (52%), Gaps = 13/296 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S ERE+SL + KA   AL   G+++S IDV      +      ++ F  +HG
Sbjct: 9   IAVLKGGPSEEREISLRTAKAVEDALSSLGYEISSIDVTTEKFEIPRDA--EICFLCIHG 66

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
           +FGEDG +Q +L    IP+T S   +S  + DK  SK +    G+P  P  +V     D 
Sbjct: 67  SFGEDGQIQRLLMRRGIPFTGSDASSSEKAFDKAWSKTLFIKGGIPTPPFCVVG----DG 122

Query: 121 QHL-ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
           + +   PPYVIKP + GSS+GI  +   + +   + +S+ ++H   +L E  + G ELT 
Sbjct: 123 KKIPFDPPYVIKPSRQGSSIGIEFVYDIKELDQAIKKSTQYDH--VVLAEALITGKELTV 180

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
           G++   +L V EI  PK  FY Y  KY+   ST+  PA + +D    VQ+ A  A   +G
Sbjct: 181 GILDGKALPVVEIK-PKEGFYDYHHKYTKGASTYFCPAPLTVDQTSAVQKTALDAFNVLG 239

Query: 240 CRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           C    R D +       + W LEIN  PGMT  S+FP  A  +G +F +L   ++E
Sbjct: 240 CSVYGRVDIILS--DNGIPWVLEINTIPGMTETSLFPMAAKASGMNFAQLCEKILE 293


>gi|167586023|ref|ZP_02378411.1| D-alanine--D-alanine ligase [Burkholderia ubonensis Bu]
          Length = 313

 Score =  161 bits (407), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 105/301 (34%), Positives = 164/301 (54%), Gaps = 19/301 (6%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-VDRSVGLVLAHLKPD---LAFN 56
           +AVL+GG+S+EREVSL+SG+     L DAG      D  +R     LA LK +    AFN
Sbjct: 12  VAVLLGGVSAEREVSLNSGRLVLQGLRDAGIDAHPFDPAERP----LAALKDEGFVRAFN 67

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR- 115
            LHG +GE+G +Q  L+   I YT SG+L SAL +DK R+K V    GVP  P   V R 
Sbjct: 68  ALHGGYGENGQIQGALDFYGIRYTGSGVLGSALGLDKFRTKLVWQQTGVPTPPFETVLRG 127

Query: 116 --FTMDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                 +  +++    P  +KP   GSS+ ++ +K   ++      + +  H   +++E+
Sbjct: 128 DDLAARAPEIVAKLGLPLFVKPASEGSSVAVLKVKTADAL--PAALAEAAKHDPIVIVEK 185

Query: 171 YVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
            ++ G E T  + GD  L V +I VP  +FY Y  KY + ++ +++P  +  D   E++R
Sbjct: 186 SIEGGGEYTACIAGDLDLPVIKI-VPAGEFYDYHAKYIADDTQYLIPCGLAADKEAELKR 244

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           +A  A   +GC    R+DF+ D  +   ++LE+N  PGMT  S+ P+ A   G S+ EL+
Sbjct: 245 IARRAFDVLGCTDWGRADFMLD-ANGDAYFLEVNTAPGMTDHSLPPKAARAVGISYSELV 303

Query: 290 L 290
           +
Sbjct: 304 V 304


>gi|332305227|ref|YP_004433078.1| D-alanine/D-alanine ligase [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332172556|gb|AEE21810.1| D-alanine/D-alanine ligase [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 326

 Score =  160 bits (406), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 103/303 (33%), Positives = 164/303 (54%), Gaps = 12/303 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-VDRSVGLVLAHLKPDLAFNVLH 59
           +AV+ GG S+EREVSL SG+A  +AL  AG      D  DR +   L   K D    +LH
Sbjct: 28  VAVMFGGRSAEREVSLRSGQAVLNALVGAGVNAHGFDPADRQL-HELVEQKFDRVLIMLH 86

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G  GEDG +Q  L+ + +PYT +G+L SAL MDK+RSKQV  S G+P     + ++   +
Sbjct: 87  GRGGEDGSLQGALQQMNMPYTGTGVLGSALCMDKIRSKQVWQSLGLPTANYEIADKRDFN 146

Query: 120 SQHL------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
           + +       +    ++KP + GSS+G+  +     +   + Q  ++ + D++L+EQ++ 
Sbjct: 147 AANCGDIMTRLGDLVMVKPAQEGSSIGMAKVSNAHQLAAAIQQ--AFEYDDKVLLEQFIQ 204

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           G E T  ++   +L    ++ P+ DFY YE KY S ++ +  P+ +  +   ++ +LA  
Sbjct: 205 GSEYTVSLLNGIALPSISMSTPR-DFYDYEAKYQSNSTEYFCPSGLSDEQETDLAQLALN 263

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           A  A+   G  R DF+ D    + + LE N  PGMT  S+ P  A  AG SF +L L ++
Sbjct: 264 AFDAVAGTGWGRIDFMQDAQG-QFYLLEANTVPGMTEKSLVPLAAKQAGLSFAQLSLAVL 322

Query: 294 EDA 296
             A
Sbjct: 323 ATA 325


>gi|238754436|ref|ZP_04615791.1| D-alanine--D-alanine ligase [Yersinia ruckeri ATCC 29473]
 gi|238707265|gb|EEP99627.1| D-alanine--D-alanine ligase [Yersinia ruckeri ATCC 29473]
          Length = 289

 Score =  160 bits (406), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 103/285 (36%), Positives = 153/285 (53%), Gaps = 13/285 (4%)

Query: 14  VSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILE 73
           +SL SG+A  + L +AG     ID        L     D AF  LHG  GEDG +Q +L+
Sbjct: 1   MSLLSGQAVLTGLREAGIDAYPIDTRDFPVTQLKERGFDKAFIALHGRGGEDGTLQGVLD 60

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF---TMDSQHLISP---- 126
            L++PYT SG++ASAL+MDK+RSK V  + G+PV P I ++R    T+ S    +     
Sbjct: 61  FLQLPYTGSGVMASALTMDKLRSKLVWQASGLPVSPFIALSRQQFETLSSGDFAAGIAKL 120

Query: 127 --PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
             P ++KP + GSS+G+   K + +  L+     ++ H + +LIE+++ G E T  ++GD
Sbjct: 121 GLPLIVKPSREGSSVGM--SKVNHASELNAALQEAFRHDNDILIEKWLSGPEFTVAMLGD 178

Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244
             L    I  P   FY YE KY S    +  P+ +     +++  LA  A+QA+GC G  
Sbjct: 179 EVLPSIRIQ-PTGVFYDYEAKYLSDTKQYFCPSGLGEQQEQQLAELARQAYQALGCSGWG 237

Query: 245 RSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           R D + D      + LE+N  PGMT  S+ P  A  AG SF +L+
Sbjct: 238 RVDVMQDG-DGGFYLLEVNTSPGMTSHSLVPMAAKQAGMSFSQLV 281


>gi|317052426|ref|YP_004113542.1| D-alanine/D-alanine ligase [Desulfurispirillum indicum S5]
 gi|316947510|gb|ADU66986.1| D-alanine/D-alanine ligase [Desulfurispirillum indicum S5]
          Length = 303

 Score =  160 bits (406), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 103/308 (33%), Positives = 166/308 (53%), Gaps = 28/308 (9%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID------VDRSVGLVLAHLKPDLA 54
           + +LMGG S EREVS+ SG     ALE+ G+ V  +D       ++ +G+       D+ 
Sbjct: 5   VGLLMGGTSREREVSVQSGTFVGKALEELGYAVRILDPQEPRWQEKLIGV-------DMV 57

Query: 55  FNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV- 113
           +N LHG  GEDG VQ  L++  IPYT +G+L SA+SMDK+ +K++  +CG+P  P+ LV 
Sbjct: 58  YNTLHGPVGEDGTVQGYLQMCGIPYTGTGVLGSAVSMDKIAAKRIALACGIP-TPAYLVV 116

Query: 114 ------NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL 167
                     M ++   S P V+K  + GSS+G+ ++         L +    +   Q++
Sbjct: 117 TADMAHGAVDMLAKSSFSFPLVVKVPREGSSIGVFIVHDAGEFQRALQECLQLDS--QVM 174

Query: 168 IEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227
           +E+Y+ G ELT G + D +L +  I V  + FY Y  KY+   + + +P K+       V
Sbjct: 175 VEEYIQGYELTSGFLDDLALPLVGI-VAGNAFYDYAAKYTKGMTVYDVPGKVDPSAASRV 233

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKV-FWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
              +    +A+G RG  R D++   L   V ++LE+N  PGMT  S+ P+ A  AG SF 
Sbjct: 234 VDYSRRLCRALGLRGAFRVDYM---LKDDVPYFLEVNTNPGMTQTSLIPKAAGAAGMSFA 290

Query: 287 ELLLWMVE 294
           +++  ++E
Sbjct: 291 DVVAKVLE 298


>gi|220904145|ref|YP_002479457.1| D-alanine/D-alanine ligase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
 gi|254767728|sp|B8IZ52|DDL_DESDA RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|219868444|gb|ACL48779.1| D-alanine/D-alanine ligase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
          Length = 306

 Score =  160 bits (406), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 103/294 (35%), Positives = 156/294 (53%), Gaps = 5/294 (1%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-DRSVGLVLAHLKPDLAFNVLHGN 61
           ++ GG S ER+VSL+  +A   ALE  G +V+  D+ +   GL+ A  + D A   LHG 
Sbjct: 5   LIAGGWSPERQVSLNGARAMVPALEARGHEVTFFDLLENFNGLLAAAEQHDFALINLHGA 64

Query: 62  FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT-MDS 120
            GEDGLVQA+L+ +  PY  +G   S L+++K  +KQ+    G+P      V  F   D 
Sbjct: 65  PGEDGLVQAMLDQVGCPYQGAGPAGSFLALNKCAAKQIFRRAGLPTADWDFVPAFPGKDW 124

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           Q  +  P  +K   GGSSL +   +      LD +    +  G+++++E  + G E+TCG
Sbjct: 125 QPRLPYPLFVKSNTGGSSLRLGRARNRAE--LDDIMGQIFAAGEEVIMEPVLPGREVTCG 182

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           ++G+  L    I     DF++YE KY    +  + PA I  ++   VQ L   AH+A+G 
Sbjct: 183 ILGEDPLPPILIEPVAGDFFNYESKYEQDGARELCPAPIGDELTARVQELTLAAHRALGL 242

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           RG SR+DF+  P    +  LE+N  PGMT  S+ P  A   G  F +LL  ++E
Sbjct: 243 RGYSRADFILGP-DDSLTLLEVNTLPGMTATSLVPREARTIGLDFGQLLERLME 295


>gi|94312057|ref|YP_585267.1| D-alanine--D-alanine ligase [Cupriavidus metallidurans CH34]
 gi|190359208|sp|Q1LIM8|DDL_RALME RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|93355909|gb|ABF09998.1| D-alanine:D-alanine ligase [Cupriavidus metallidurans CH34]
          Length = 327

 Score =  160 bits (406), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 107/307 (34%), Positives = 173/307 (56%), Gaps = 18/307 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VL+GG S+ERE+SL SG    +AL+  G      D        LA    D  F  LHG
Sbjct: 17  VGVLLGGKSAEREISLLSGNGVLAALKSRGVDAHPFDPGLQPISELAAAGFDRVFIALHG 76

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG +Q +LE L IPYT SG+LASAL+MDK  +K++  + G+   P   +     D 
Sbjct: 77  RYGEDGTMQGLLEQLGIPYTGSGVLASALAMDKQATKRLWMTHGL-ATPRFAMLYANTDF 135

Query: 121 QHLISP---PYVIKPLKGGSSLGII-VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
             +++    P ++KP + GSS+G+  VI  DQ       + ++    D ++ E ++DG E
Sbjct: 136 DAVVADLGLPLIVKPAREGSSIGLTKVIAADQM--RAAFEKAAGLDAD-VIAETFIDGAE 192

Query: 177 LTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
           LTC ++G+     +L V +I  P+S+ Y Y+ KY + ++ ++ P+ +P  + +EV+ LA 
Sbjct: 193 LTCPIVGEGPTAEALPVIKIVAPESN-YDYQNKYFTDDTQYLCPSTLPDALEREVRALAV 251

Query: 233 LAHQAIGCRGISRSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
            A + +GCRG +R+D +   L+R  K + LE+N  PGMT  S+ P  A   G S+ + ++
Sbjct: 252 EAFRVLGCRGWARADVM---LTRDGKPYLLEMNTSPGMTGHSLVPMAARANGISYEDFVM 308

Query: 291 WMVEDAS 297
            ++  A+
Sbjct: 309 QVLAAAT 315


>gi|323527428|ref|YP_004229581.1| D-alanine/D-alanine ligase [Burkholderia sp. CCGE1001]
 gi|323384430|gb|ADX56521.1| D-alanine/D-alanine ligase [Burkholderia sp. CCGE1001]
          Length = 313

 Score =  160 bits (406), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 105/304 (34%), Positives = 166/304 (54%), Gaps = 19/304 (6%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-VDRSVGLVLAHLKPD---LAFN 56
           +AVL+GG S+EREVSL+SG+     L DAG      D  +R     LA LK +    AFN
Sbjct: 12  VAVLLGGNSAEREVSLNSGRLVLQGLRDAGVDAHPFDPAERP----LAALKDEGFVRAFN 67

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR- 115
            LHG +GE+G +Q  L+   I YT SG+L SAL +DK R+K V    G+P  P   V R 
Sbjct: 68  ALHGGYGENGQIQGALDFYGIKYTGSGVLGSALGLDKFRTKLVWQQLGIPTPPFEAVMRG 127

Query: 116 --FTMDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
             +   ++ +++    P  +KP   GSS+ +I +K   ++P  L+++  ++    +++E+
Sbjct: 128 DDYEARAKDIVAKLGLPLFVKPASEGSSVAVIKVKSADALPAALVEAVKYDR--IVVVEK 185

Query: 171 YVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
            ++ G E T  + GD  L V  I VP  +FY Y  KY + ++ +++P  +       ++ 
Sbjct: 186 SIEGGGEYTACIAGDLDLPVIRI-VPAGEFYDYHAKYIANDTQYLIPCGLTPAEETRMKV 244

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           LA  A   +GC    R+DF+ D      F LE+N  PGMT  S+ P+ A   G S++EL+
Sbjct: 245 LARRAFDVLGCTDWGRADFMLDADGNPYF-LEVNTAPGMTDHSLPPKAARAVGISYQELV 303

Query: 290 LWMV 293
           + ++
Sbjct: 304 VGVL 307


>gi|296112511|ref|YP_003626449.1| D-alanine-D-alanine ligase B DdlB [Moraxella catarrhalis RH4]
 gi|295920205|gb|ADG60556.1| D-alanine-D-alanine ligase B DdlB [Moraxella catarrhalis RH4]
          Length = 307

 Score =  160 bits (406), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 108/298 (36%), Positives = 164/298 (55%), Gaps = 12/298 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-VDRSVGLVLAHLKP-DLAFNVL 58
           +AV+ GG S+EREVSL+SG A  +AL   G      D  D  +    +HL+  D  FNVL
Sbjct: 15  VAVICGGKSTEREVSLNSGMAVLNALLSKGVDAHHFDPADTDI----SHLRAYDRVFNVL 70

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
           HG FGEDG +Q +L+   +PYT  G+LASA++MDK R + +  S G+P  P ++++  + 
Sbjct: 71  HGTFGEDGSLQGVLDGFNLPYTGCGVLASAIAMDKFRCRLLWQSLGLPNVPYVVLHDDSD 130

Query: 119 DS--QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
            S  +     P  +KP   GSS+G+ ++  +Q+  L  +      +  ++L E+ + G E
Sbjct: 131 FSAVEREFGLPLFVKPAAEGSSVGVFMV--EQAGDLAKIYPKLKQYHGEILAEKAMMGGE 188

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
               ++G+  L    I +PK  FY YE KY   ++ +  P+ +  +  +++  LA  A +
Sbjct: 189 YAIPLLGEQVLPSIRI-IPKGKFYDYEAKYLRDDTIYQCPSDLTPEQERQMGELALKAFR 247

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           AIG RG SR DFL      K++ LEIN  PGMT  S+ P  A  AG  F EL L ++ 
Sbjct: 248 AIGGRGWSRVDFL-KGHDGKLYVLEINTVPGMTDHSLVPMAAKEAGIGFDELCLQILR 304


>gi|256833758|ref|YP_003162485.1| D-alanine--D-alanine ligase [Jonesia denitrificans DSM 20603]
 gi|256687289|gb|ACV10182.1| D-alanine--D-alanine ligase [Jonesia denitrificans DSM 20603]
          Length = 319

 Score =  160 bits (406), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 102/299 (34%), Positives = 169/299 (56%), Gaps = 24/299 (8%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62
           +L GG+S ER+VSL SG+  A AL   G  VS +DVD  +   L   +PDL + +LHG  
Sbjct: 9   ILAGGLSHERDVSLRSGRRVAEALRSTGMTVSVVDVDAQLLPRLQSHRPDLVWPLLHGAS 68

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFT-M 118
           GEDG ++ +LELL++PY  +    S ++ +K  +K V+++ GV + PS +    + F  +
Sbjct: 69  GEDGSIRDVLELLDLPYLGTRPRESRVAWNKPVAKAVLAAAGV-LTPSYVTLPQSLFREL 127

Query: 119 DSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
            ++ ++ P       P V+KP +GGS+LG+ ++   + +P  L+    + +GD  LIE+ 
Sbjct: 128 GARSVMEPVTAKLGLPLVVKPAQGGSALGVTLVTSAEQLPQALVD--CFAYGDLALIEEA 185

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDF-----YSYELKYSSLNSTHVLPAKIPLDIYKE 226
           + G E++  V+   S DVT  A+P  +      Y Y+ +Y+   + +  PA++  +I   
Sbjct: 186 ITGTEVSVSVV--ESPDVT--ALPAVEIITDGPYDYDARYNPGRTQYFTPARLDPEIADA 241

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285
             R+A  AH  +G R +SRSD + D    +V++LE+NV PGMT  S+ P+    +G S 
Sbjct: 242 AARVALTAHTTLGLRHVSRSDLIIDG-KGQVWFLEVNVAPGMTETSLLPQAVVASGQSL 299


>gi|218893501|ref|YP_002442370.1| D-alanine--D-alanine ligase [Pseudomonas aeruginosa LESB58]
 gi|218773729|emb|CAW29543.1| D-alanine--D-alanine ligase [Pseudomonas aeruginosa LESB58]
          Length = 319

 Score =  160 bits (406), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 109/304 (35%), Positives = 160/304 (52%), Gaps = 10/304 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL SG     +L  A      IDV   +   L   K D AF +LHG
Sbjct: 21  VAVLFGGKSAEREVSLKSGAMVLQSLLAARVDAFGIDVGEDLLQRLVEEKIDRAFIILHG 80

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFT 117
             GEDG +Q +LE   IPYT SG+LASAL+MDK+R+K+V  S G+P  P   V       
Sbjct: 81  RGGEDGSMQGLLECAGIPYTGSGVLASALAMDKLRTKRVWLSLGLPT-PDYAVLASEDDC 139

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            ++   +  P ++KP   GSS+G+   K    + L      +  +  Q+L+EQ++ G E 
Sbjct: 140 REAAQRLGFPLIVKPAHEGSSIGM--AKVGGLVELIAAWREAARYDSQVLVEQWISGPEF 197

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           T   +    L    +  P + FY Y+ KY + ++ + +P  +      E++ L   A  A
Sbjct: 198 TVATLRGQVLPAIRLGTPHT-FYDYDAKYLASDTRYQVPCGLDEAKESELKELTARACDA 256

Query: 238 IGCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +G +G  R+D + D   R  FW LE+N  PGMT  S+ P  A  AG  F++L+L ++ D+
Sbjct: 257 LGIQGWGRADVMQDAEGR--FWLLEVNTAPGMTDHSLVPMAARAAGLDFQQLVLAILADS 314

Query: 297 SCLR 300
              R
Sbjct: 315 REAR 318


>gi|32130422|sp|Q9PF79|DDL_XYLFA RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
          Length = 304

 Score =  160 bits (405), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 111/309 (35%), Positives = 173/309 (55%), Gaps = 27/309 (8%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL SG+     L   G     +D   ++   L   + D  FNVLHG
Sbjct: 5   VAVLLGGTSAEREVSLLSGRNVLEVLRVRGVDAQSVDGVPALAQALVERRFDRVFNVLHG 64

Query: 61  NFG--EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP--------VCPS 110
           + G  EDG+VQ +++   +PYT S +L SALSMDK+R+KQV  + G+P        VC +
Sbjct: 65  HNGGGEDGVVQGLMQAFGVPYTGSDVLGSALSMDKVRTKQVWLALGLPTPRYASLSVCAT 124

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS---SWNHGDQLL 167
            +  R  ++   ++  P +IKP K GSS+G+      +   L+ L+ +   +  +  +LL
Sbjct: 125 AVEVRQAVE---MLGFPVIIKPAKEGSSVGV-----SRVFALEHLEEAVALAARYEGELL 176

Query: 168 IEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD--IYK 225
           +EQ ++G ELT  ++ + +L    I VP+  +Y Y  KY + ++ +V P    LD     
Sbjct: 177 MEQLIEGDELTVSILDEMALPSIRI-VPQGQWYDYNAKYLAEDTQYVCPG---LDDVAEA 232

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285
           E+ RLA  A +A+GCRG  R D + +  S + F LE+N  PGMT  S+ P+ A+  G  F
Sbjct: 233 EIARLALAAFRAVGCRGWGRVDVMRERGSGRFFLLEVNTAPGMTTHSLVPKAASQLGMGF 292

Query: 286 RELLLWMVE 294
            +L+  ++E
Sbjct: 293 DDLVWRILE 301


>gi|295677760|ref|YP_003606284.1| D-alanine/D-alanine ligase [Burkholderia sp. CCGE1002]
 gi|295437603|gb|ADG16773.1| D-alanine/D-alanine ligase [Burkholderia sp. CCGE1002]
          Length = 313

 Score =  160 bits (405), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 103/304 (33%), Positives = 169/304 (55%), Gaps = 19/304 (6%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-VDRSVGLVLAHLKPD---LAFN 56
           +AVL+GG S+EREVSL+SG+     L DAG      D  +R     L+ LK +    AFN
Sbjct: 12  VAVLLGGNSAEREVSLNSGRLVLQGLRDAGVDAHPFDPAERP----LSALKDEGFVRAFN 67

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR- 115
            LHG +GE+G +Q  L+   I YT SG+L SAL +DK R+K V    G+P  P   V R 
Sbjct: 68  ALHGGYGENGQIQGALDFYGIRYTGSGVLGSALGLDKFRTKLVWQQLGIPTPPFEAVLRG 127

Query: 116 --FTMDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
             +   ++ +++    P  +KP   GSS+ +I +K   ++P  L+++  ++    +++E+
Sbjct: 128 DDYEARAKEIVAKLGLPLFVKPASEGSSVAVIKVKSADALPAALIEAVKYDR--IVVVEK 185

Query: 171 YVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
            ++ G E T  + G+  L V  I VP  +FY Y  KY + ++ +++P  +  +    ++ 
Sbjct: 186 SIEGGGEYTACIAGNLDLPVIRI-VPAGEFYDYHAKYIANDTQYLIPCGLGAEEEARLKV 244

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           LA  A   +GC    R+DF+ D    K ++LE+N  PGMT  S+ P+ A   G S++EL+
Sbjct: 245 LARRAFDVLGCTDWGRADFMLDG-DGKPYFLEVNTAPGMTDHSLPPKAARAVGISYQELV 303

Query: 290 LWMV 293
           + ++
Sbjct: 304 VGVL 307


>gi|308048070|ref|YP_003911636.1| D-alanine--D-alanine ligase [Ferrimonas balearica DSM 9799]
 gi|307630260|gb|ADN74562.1| D-alanine--D-alanine ligase [Ferrimonas balearica DSM 9799]
          Length = 306

 Score =  160 bits (405), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 109/299 (36%), Positives = 159/299 (53%), Gaps = 20/299 (6%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-VDRSVGLVLAHLKP-DLAFNVL 58
           +AVL GG S+EREVSL SG A  + L+  G      D  +RS    L  LK  D AF VL
Sbjct: 10  VAVLFGGTSAEREVSLRSGAAVLAGLQRGGVDAHPFDPAERS----LDELKGFDRAFIVL 65

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--F 116
           HG  GEDG VQ  LEL++IPYT S +L  A++MDK+R+K + +  G+P     +V++  F
Sbjct: 66  HGRGGEDGTVQGALELMKIPYTGSRVLGCAVAMDKVRTKWLWAGLGLPTADFEVVDKESF 125

Query: 117 TMDSQHLI----SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
           + +S   I      P ++KP   GSS+G+   K + +  L     ++  + D +L+E +V
Sbjct: 126 SPNSAEDIMARLGSPVMVKPACEGSSIGM--AKAEDAASLQKAIDTALQYDDTVLVEAWV 183

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G E T  ++G+ +L    +  P   FY YE KY S  + +  PA +  D  + ++ LA 
Sbjct: 184 HGPEFTVSILGEEALPAIRMETPNV-FYDYEAKYQSQTTQYHCPAGLSDDDEQALRALAL 242

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFW--LEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
            A +A+G  G  R D + D       W  LE+N  PGMT  S+ P+ A   G  F  L+
Sbjct: 243 RAFKAVGASGWGRVDVMRDADGS---WRLLEVNTVPGMTETSLVPKAANAVGVDFDTLV 298


>gi|149927134|ref|ZP_01915391.1| D-alanine--D-alanine ligase [Limnobacter sp. MED105]
 gi|149824073|gb|EDM83294.1| D-alanine--D-alanine ligase [Limnobacter sp. MED105]
          Length = 323

 Score =  160 bits (404), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 112/307 (36%), Positives = 159/307 (51%), Gaps = 24/307 (7%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62
           VL GG S+EREVSL SG    +AL+  G      D      + LA  + D A   LHG F
Sbjct: 15  VLFGGRSAEREVSLKSGSMVLAALKRNGVDAHGFDPAERSMVELAQGEFDRAVISLHGRF 74

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCG------VPVCPSILVNRF 116
           GEDG +Q +LE L IPYT SG+ ASAL+MDK+ +K    S G      V + P   V+  
Sbjct: 75  GEDGTIQGVLEWLNIPYTGSGVTASALAMDKILTKAAWISQGLATPDYVRLEPGFNVSEV 134

Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS---SWNHGDQLLIEQYVD 173
                  +  P ++KP + GS+LG+  +K      +D LQ++   ++ +   +L E++V 
Sbjct: 135 V----QRLGLPLIVKPAQEGSTLGLTKVKT-----VDQLQAAFDLAYKYDPNVLAEKFVS 185

Query: 174 GIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           G ELT  VMG+     +L V  I  P  + Y Y  KY    + +  P+ +  D   EVQ 
Sbjct: 186 GQELTVPVMGEGAGAHALPVIRIQAPDGN-YDYHNKYIGNETKYFCPSGLNSDFEAEVQA 244

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           L   A+Q +GC G  R+D L D  S K + LE+N  PGMT  S+ P  A  +G  + +L+
Sbjct: 245 LCVKAYQVLGCAGWGRADVLVDE-SGKPWLLEMNTSPGMTDHSLVPMSARASGVEYDDLV 303

Query: 290 LWMVEDA 296
           L +   A
Sbjct: 304 LQIAASA 310


>gi|149377260|ref|ZP_01895007.1| D-alanine-D-alanine ligase B [Marinobacter algicola DG893]
 gi|149358448|gb|EDM46923.1| D-alanine-D-alanine ligase B [Marinobacter algicola DG893]
          Length = 325

 Score =  160 bits (404), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 108/299 (36%), Positives = 164/299 (54%), Gaps = 10/299 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AV +GG S+EREVSL SG+A  SAL  AG     +DV   +   +   + D  F  LHG
Sbjct: 26  VAVFLGGDSAEREVSLKSGQAVLSALVSAGVDAYAVDVRGCLLKTVEEPEFDRVFIALHG 85

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +QAIL    IP+T S +LASAL+MDK+RSK V   CG+P  P         ++
Sbjct: 86  RGGEDGTIQAILSQAGIPFTGSDVLASALAMDKLRSKYVFEGCGLPT-PKFRAMASAEEA 144

Query: 121 ---QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
                 +S P  +KP + GSS+GI  +  +Q +     Q+++ +    +L+E++++G E 
Sbjct: 145 GSLLQSLSLPLSVKPSREGSSIGIRKVNSEQELVEAYTQAAALDP--LVLVEEWIEGPEF 202

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           T  ++ D +L    +      FY Y+ KY + ++ + +P  +  D   ++Q LA  A + 
Sbjct: 203 TVSLLQDQALPAIGLCTDHV-FYDYDAKYLADDTRYQIPCGLDPDSELKLQHLALDAFRV 261

Query: 238 IGCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           +GCR   R D + D   +  FW LE+N  PGMT  S+ P  A  AG SF EL++ ++ D
Sbjct: 262 LGCRTWGRVDIMQD--RQGEFWILEVNTVPGMTDHSLVPMSARAAGISFEELVVRILMD 318


>gi|299538056|ref|ZP_07051341.1| D-alanine--D-alanine ligase [Lysinibacillus fusiformis ZC1]
 gi|298726258|gb|EFI66848.1| D-alanine--D-alanine ligase [Lysinibacillus fusiformis ZC1]
          Length = 302

 Score =  160 bits (404), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 102/298 (34%), Positives = 165/298 (55%), Gaps = 11/298 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGG SSE++VS+ +GK   + L+   ++V  I +D +  ++      D+A   LHG
Sbjct: 3   VGVIMGGTSSEKQVSIMTGKEMVAQLDKQKYEVVAITLDDNKEVIAKVGDIDVALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVNRF 116
            FGEDG +Q +LE L IPYT SG+LAS+L MDK  +K+++   GV   P     I     
Sbjct: 63  KFGEDGTIQGVLETLGIPYTGSGLLASSLCMDKTMAKKILRYEGV-ATPDWVHLIKGEEL 121

Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
            +    L+  P V+KP  GGSS+G+ ++    ++   + +   W+  ++ +IEQY+ G E
Sbjct: 122 PLQDIELMGYPLVVKPNAGGSSVGVQIVHDRSALLAAITEVFKWD--NESIIEQYLIGDE 179

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +TC ++ +  L V  I    + F+ Y+ KY    ST   P ++PL I+  V + A ++++
Sbjct: 180 ITCPILNEQLLPVLSIK-HTAVFFDYQAKYDD-ASTVEEPVELPLAIHDRVAKAAMISYK 237

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           A+ C   +R D L        + LE+N  PGMT  S+ P+ A  AG S+  LL  ++E
Sbjct: 238 ALRCTVYARVDMLIK--DGVPYVLEVNTLPGMTQNSLLPKSALAAGISYSALLDSIIE 293


>gi|15837401|ref|NP_298089.1| D-alanine--D-alanine ligase [Xylella fastidiosa 9a5c]
 gi|9105695|gb|AAF83609.1|AE003919_20 D-alanine--D-alanine ligase B [Xylella fastidiosa 9a5c]
          Length = 320

 Score =  160 bits (404), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 111/309 (35%), Positives = 173/309 (55%), Gaps = 27/309 (8%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL SG+     L   G     +D   ++   L   + D  FNVLHG
Sbjct: 21  VAVLLGGTSAEREVSLLSGRNVLEVLRVRGVDAQSVDGVPALAQALVERRFDRVFNVLHG 80

Query: 61  NFG--EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP--------VCPS 110
           + G  EDG+VQ +++   +PYT S +L SALSMDK+R+KQV  + G+P        VC +
Sbjct: 81  HNGGGEDGVVQGLMQAFGVPYTGSDVLGSALSMDKVRTKQVWLALGLPTPRYASLSVCAT 140

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS---SWNHGDQLL 167
            +  R  ++   ++  P +IKP K GSS+G+      +   L+ L+ +   +  +  +LL
Sbjct: 141 AVEVRQAVE---MLGFPVIIKPAKEGSSVGV-----SRVFALEHLEEAVALAARYEGELL 192

Query: 168 IEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD--IYK 225
           +EQ ++G ELT  ++ + +L    I VP+  +Y Y  KY + ++ +V P    LD     
Sbjct: 193 MEQLIEGDELTVSILDEMALPSIRI-VPQGQWYDYNAKYLAEDTQYVCPG---LDDVAEA 248

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285
           E+ RLA  A +A+GCRG  R D + +  S + F LE+N  PGMT  S+ P+ A+  G  F
Sbjct: 249 EIARLALAAFRAVGCRGWGRVDVMRERGSGRFFLLEVNTAPGMTTHSLVPKAASQLGMGF 308

Query: 286 RELLLWMVE 294
            +L+  ++E
Sbjct: 309 DDLVWRILE 317


>gi|332142422|ref|YP_004428160.1| D-alanine--D-alanine ligase [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|327552444|gb|AEA99162.1| D-alanine--D-alanine ligase [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 322

 Score =  160 bits (404), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 103/297 (34%), Positives = 162/297 (54%), Gaps = 12/297 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-VDRSVGLVLAHLKPDLAFNVLH 59
           +AVL+GG S+EREVSL+SG A  +AL   G      D  +R +  +L+ L  D A  +LH
Sbjct: 17  VAVLLGGDSAEREVSLNSGNAVLNALLRQGVNAFAFDPAERPLNDLLS-LDVDRALIMLH 75

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G  GEDG +Q  L+ L+IPYT S +L SAL+MDK+ +KQV  S G+P     + ++   +
Sbjct: 76  GRGGEDGAMQGALQFLKIPYTGSRVLGSALAMDKIHTKQVWQSLGLPTAKYEIADKRHFE 135

Query: 120 SQHL------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
           +         +    ++KP + GSS+G+  +   +   L+     ++ + +Q+L+EQY+D
Sbjct: 136 AGKCSAIMDKLGNEVMVKPAREGSSIGMARVTSAKQ--LETAIQDAFKYDNQVLLEQYID 193

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           G E T  V+   +L    ++ P + FY Y  KY    + +  P+ +  +   ++ +LA  
Sbjct: 194 GPEFTVSVIQGQALPSIRMSTPHT-FYDYAAKYQDNTTEYYCPSGLSEEQEAQLAKLASR 252

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A  AI   G  R D + D   R+ + LE N  PGMT  S+ P+ A  AG +F EL+L
Sbjct: 253 AFDAISGSGWGRIDVMQDN-QRQFYLLEANTVPGMTEKSLVPKAAKVAGLTFDELVL 308


>gi|302877581|ref|YP_003846145.1| D-alanine/D-alanine ligase [Gallionella capsiferriformans ES-2]
 gi|302580370|gb|ADL54381.1| D-alanine/D-alanine ligase [Gallionella capsiferriformans ES-2]
          Length = 631

 Score =  160 bits (404), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 109/292 (37%), Positives = 155/292 (53%), Gaps = 6/292 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL SG A  ++L  +G      D        L     D  F  LHG
Sbjct: 335 VAVLFGGRSAEREVSLKSGAAVLASLLRSGVDAHAFDPASRSLQELQEQGFDRVFIALHG 394

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--M 118
            FGEDG VQ  LELL IPYT SG++AS+L MDK RSK V  + G+PV   +++   +  +
Sbjct: 395 RFGEDGTVQGALELLGIPYTGSGVMASSLGMDKWRSKLVWQAGGLPVPDFMMLAEQSEPL 454

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           D    +  P  +KP   GSS+GI  +K    +     +++   H   ++ E+++ G E T
Sbjct: 455 DVIGKLGLPLFVKPANEGSSVGISKVKAVGELQAAYREAA--RHDPLVIAERFIGGGEYT 512

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             ++GD  L V +I  P ++FY +E KY   ++ +  P+ +      ++Q LA  A   I
Sbjct: 513 VAILGDQVLPVIKIE-PANEFYDFEAKYLRDDTCYRCPSGLDAASEAKMQGLAQAAFALI 571

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           G +G  R DFL     +  + LE N  PGMT  S+ P  A  AG SF EL+L
Sbjct: 572 GGQGWGRVDFLMSEAGQP-YVLEANTSPGMTDHSLVPMAARQAGISFDELVL 622


>gi|295106875|emb|CBL04418.1| D-alanine--D-alanine ligase [Gordonibacter pamelaeae 7-10-1-b]
          Length = 310

 Score =  160 bits (404), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 107/304 (35%), Positives = 161/304 (52%), Gaps = 13/304 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59
           +A+L GG S EREVSL S  A   ALE   ++V +ID         L     +  F  LH
Sbjct: 8   IALLCGGASGEREVSLLSAAAVEEALEKR-YEVIKIDTGVEGWAHTLLDSSVEGVFICLH 66

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM- 118
           G  GE+G +Q   E + +PYT  G+L+SA++MDK  +K +V S  +P    I V R    
Sbjct: 67  GGAGENGSIQGFCESVGLPYTGPGVLSSAIAMDKFVAKLLVESFRIPTPGYIRVLRGEEC 126

Query: 119 ---DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175
              D +  +    V+KP   GS+LG+ ++  D    L     ++      +L+EQ++ G 
Sbjct: 127 NIEDIRTKLGGKLVVKPSTEGSALGVSIV--DNGDDLACAIDTALELAPSVLVEQFISGR 184

Query: 176 ELTCGVMGDASLDV---TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
           ELT  V+G     V    EI +P ++FY YE KY    + H+ PA +     ++ + +A 
Sbjct: 185 ELTVAVLGGEKPRVLPPIEI-IPANEFYDYEAKYEQDMAQHICPANLTEAELRQCEEMAL 243

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
            AH A+GC G+SR+D + D  +R +++LE N  PGMT  S+ P+ A   G +F EL   +
Sbjct: 244 GAHDALGCYGVSRTDCILDERNR-LWYLETNTIPGMTGTSLLPDAAKAVGITFDELCWNI 302

Query: 293 VEDA 296
           +EDA
Sbjct: 303 MEDA 306


>gi|330815445|ref|YP_004359150.1| D-alanine--D-alanine ligase [Burkholderia gladioli BSR3]
 gi|327367838|gb|AEA59194.1| D-alanine--D-alanine ligase [Burkholderia gladioli BSR3]
          Length = 313

 Score =  159 bits (403), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 106/300 (35%), Positives = 157/300 (52%), Gaps = 17/300 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD---LAFNV 57
           +AVL+GG+S+EREVSL SG      L +AG      D        LA LK +    AFN 
Sbjct: 12  VAVLLGGVSAEREVSLKSGTLVVQGLREAGIDAHPFDPSERP---LAALKDEGYVRAFNA 68

Query: 58  LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---N 114
           LHG +GE+G +Q  L+   I YT +G+L SAL +DK R+K V    G+P  P  +V   +
Sbjct: 69  LHGGYGENGQIQGALDFYGIRYTGTGVLGSALGLDKFRTKLVWQQTGIPTPPFEVVLCGD 128

Query: 115 RFTMDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
            +   +  +++    P  +KP   GSS+ +I +K   +  L      +  H   +L+E+ 
Sbjct: 129 DYAARAPEIVAKLGLPLFVKPASEGSSVAVIKVKDAAA--LPAALDEAARHDKIVLVEKS 186

Query: 172 VD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
           ++ G E T  + GD  L V  I VP  +FY Y  KY + ++ +++P  I      EV+RL
Sbjct: 187 IEGGGEYTACIAGDLDLPVIRI-VPAGEFYDYHAKYIADDTQYLIPCGIEAGREAEVKRL 245

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A  A   +GC    R+DF+ D      F LE+N  PGMT  S+ P+ A   G S+ EL++
Sbjct: 246 ARRAFDVLGCTDWGRADFMLDAAGNPYF-LEVNTAPGMTDHSLPPKAARAVGISYSELVV 304


>gi|328949926|ref|YP_004367261.1| D-alanine--D-alanine ligase [Marinithermus hydrothermalis DSM
           14884]
 gi|328450250|gb|AEB11151.1| D-alanine--D-alanine ligase [Marinithermus hydrothermalis DSM
           14884]
          Length = 324

 Score =  159 bits (403), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 80/241 (33%), Positives = 145/241 (60%), Gaps = 6/241 (2%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+AF +LHG +GEDG +Q  LE+L +PY  +G+ A+AL MDK  +K+ ++  G+PV P +
Sbjct: 78  DVAFPLLHGRWGEDGTIQGFLEMLGLPYVGAGVGAAALCMDKELTKRTLAHAGIPVVPWV 137

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
            + R     +   SPPY +KP   GSS+GI  ++  +++   L ++  W+  D++L+EQ 
Sbjct: 138 SLWRGEGLPELPFSPPYFVKPANTGSSVGISKVRTREALGPALEEAFRWD--DRVLVEQG 195

Query: 172 VDGI-ELTCGVMGDASLDVTEIAVPK--SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           ++G+ EL   ++G+ + + + +   +  S+FY Y  KY+   +  ++PA +  D+ + +Q
Sbjct: 196 LEGVRELEVALLGNVTAEASVVGEVRYQSEFYDYATKYTPGRAELLIPAPVDADVARRLQ 255

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
            +A  A++ +G RG++R DF   P    ++  E+N  PG TP S++P++   +G  +  L
Sbjct: 256 EVARTAYRLLGVRGLARVDFFLAP-DGALYLNELNTMPGFTPTSMYPKLWQASGLEYEAL 314

Query: 289 L 289
           L
Sbjct: 315 L 315


>gi|223937418|ref|ZP_03629323.1| D-alanine/D-alanine ligase [bacterium Ellin514]
 gi|223893969|gb|EEF60425.1| D-alanine/D-alanine ligase [bacterium Ellin514]
          Length = 304

 Score =  159 bits (403), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 103/296 (34%), Positives = 156/296 (52%), Gaps = 10/296 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V++GG S+EREVSL +G A A AL   G +V ++D       + A    ++ F  LHG
Sbjct: 12  ITVMLGGPSAEREVSLRTGGAVAKALRSLGHRVDELDPKEKKWSLPAGT--EVVFLALHG 69

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG VQ  L+ L IPYT     AS L  DK+ +KQ     GVP    ++    +   
Sbjct: 70  TYGEDGTVQRELDKLGIPYTGCDAEASRLGFDKILTKQKCVEAGVPTARFMIFESRSAVW 129

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKK--DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                PP V+KP++ GSS+G+  + +  D S  L    + +  +  Q+L+E+ + G E T
Sbjct: 130 PMGWQPPVVLKPVRQGSSVGLQFVDRVGDWSKKL----AEALRYDTQVLMEERILGRETT 185

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
            G++G+  L + E+  PK+  Y Y+ KY++  + ++ PA     +   +Q  A  A +AI
Sbjct: 186 VGILGNRPLPIVEVR-PKAGNYDYQNKYTAGATEYLCPAPFDEAVTARIQEAALGAFKAI 244

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           G R  SR D +  P    V  LE+N  PGMT  S+ P+ A  AG  + EL   MV+
Sbjct: 245 GGRDYSRVDVMVRPNGEPVV-LEVNTLPGMTETSLLPKAAMAAGIGYAELCQQMVD 299


>gi|325295149|ref|YP_004281663.1| D-alanine--D-alanine ligase [Desulfurobacterium thermolithotrophum
           DSM 11699]
 gi|325065597|gb|ADY73604.1| D-alanine--D-alanine ligase [Desulfurobacterium thermolithotrophum
           DSM 11699]
          Length = 291

 Score =  159 bits (402), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 94/294 (31%), Positives = 163/294 (55%), Gaps = 6/294 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AV+ GG S E E+S  S K+   AL+  G +V ++++D ++   L   KPD  F  LHG
Sbjct: 3   VAVIYGGPSPEAEISRKSAKSVIFALKKLGHQVFELELDENITEKLKQQKPDKVFITLHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
           + GEDG VQ +LE+    YT      SA+ MDK  +K+V+ +  +PV        F  D 
Sbjct: 63  SPGEDGTVQGLLEIAGYNYTGCNTQTSAICMDKDITKRVLKTYNIPVPAGETF--FQGDK 120

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P V+KP + GS++GI V+K + S    +    ++ +  +++IE+Y++G E+T  
Sbjct: 121 IEPVEIPCVVKPARTGSTVGISVVKDENSFQKAV--EEAFKYDSKIIIEEYIEGREITVA 178

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V+   +L   EI V ++ FY ++ KY    + + +PA + L + +++++++    + + C
Sbjct: 179 VLNGFALPPVEI-VTETGFYDFDSKYKKQTTEYKVPANLNLKLQEKLKKISEKIFKVLEC 237

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           +G  R DF  D  +   + LE+N  PGMT  S+ P+ A  AG  F +L+  ++E
Sbjct: 238 KGAIRIDFRIDKWNNP-YVLEVNTIPGMTERSLLPKAANAAGIPFEKLIEEILE 290


>gi|239994433|ref|ZP_04714957.1| D-alanine--D-alanine ligase [Alteromonas macleodii ATCC 27126]
          Length = 327

 Score =  159 bits (402), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 102/296 (34%), Positives = 157/296 (53%), Gaps = 10/296 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SG A  +AL   G      D        L  L  D A  +LHG
Sbjct: 22  VAVLLGGDSAEREVSLNSGNAVLNALLRQGVDAFAFDPAERPLTDLIDLNVDRALIMLHG 81

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q  L+ L+IPYT S +L SAL+MDK+ +KQV  S G+P     + ++   ++
Sbjct: 82  RGGEDGSMQGALQFLKIPYTGSRVLGSALAMDKIHTKQVWQSLGLPTAKYEIADKRHFEA 141

Query: 121 QHL------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
                    +    ++KP + GSS+G+  +   +   L+     ++ + +Q+L+EQY+DG
Sbjct: 142 GKCSAIMDKLGNEVMVKPAREGSSIGMARVTSAKQ--LETAIQDAFKYDNQVLLEQYIDG 199

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
            E T  V+   +L    ++ P + FY Y  KY    + +  P+ +  +   ++ +LA  A
Sbjct: 200 PEFTVSVLQGQALPSIRMSTPHT-FYDYAAKYQDNTTEYYCPSGLSEEQEAQLAKLASRA 258

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             AI   G  R D + D   R+ + LE N  PGMT  S+ P+ A  AG +F EL+L
Sbjct: 259 FDAISGSGWGRIDVMQDN-QRQFYLLEANTVPGMTEKSLVPKAAKVAGLTFDELVL 313


>gi|15599396|ref|NP_252890.1| D-alanine-D-alanine ligase A [Pseudomonas aeruginosa PAO1]
 gi|39931187|sp|Q9HWI0|DDLA_PSEAE RecName: Full=D-alanine--D-alanine ligase A; AltName:
           Full=D-Ala-D-Ala ligase A; AltName: Full=D-alanylalanine
           synthetase A
 gi|9950412|gb|AAG07588.1|AE004836_7 D-alanine-D-alanine ligase A [Pseudomonas aeruginosa PAO1]
          Length = 346

 Score =  159 bits (401), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 109/326 (33%), Positives = 166/326 (50%), Gaps = 45/326 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +AVL GG S ER+VS++SG     AL  AG +V  + VD + GL+ A  +          
Sbjct: 8   VAVLFGGSSEERDVSIASGAQVIQALRSAGHQV--LAVDTASGLLGAEEERRLLASKVKE 65

Query: 52  ---------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84
                                      D+ F  LHG  GEDG +QA+L+     YT SG 
Sbjct: 66  VPPDSDSLAIIRSGKQSLLSAGELAGVDVFFLALHGGTGEDGTLQALLDAGGFAYTGSGH 125

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
           LASA++MDK  +K++  + GV     ++      + +  +  P V+KP   GS++G+ ++
Sbjct: 126 LASAMAMDKDVAKRLFLAAGVETASWLMAPASEEEVREQLGFPLVVKPNSQGSTVGLSIV 185

Query: 145 KKDQSI--PLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSY 202
                +   ++L    +  +GD++++E++V G E+T GV+ D +L V EI +   + + Y
Sbjct: 186 HSQAELQPAIEL----AGRYGDEVMLERFVAGREVTVGVLDDQALPVGEILLGGQEVFDY 241

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
           E KY +     V PA +P  I  E QRLA   H+A+   G SR+DF  D   R ++ LE+
Sbjct: 242 EHKYQAGAVREVFPADLPPAIAAEAQRLALKVHRALKLSGYSRTDFRLDEQGR-LWCLEV 300

Query: 263 NVQPGMTPVSIFPEMAAYAGYSFREL 288
           N  PGMT  S+ P+ AA AG  F EL
Sbjct: 301 NTLPGMTATSLLPQAAAAAGIGFAEL 326


>gi|291518128|emb|CBK73349.1| D-alanine--D-alanine ligase [Butyrivibrio fibrisolvens 16/4]
          Length = 347

 Score =  159 bits (401), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 101/336 (30%), Positives = 161/336 (47%), Gaps = 52/336 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------------------- 38
           + VL GG+SSER+VS  SG   A AL + G +   +DV                      
Sbjct: 3   IVVLAGGLSSERDVSFKSGTMVAKALRNRGHRALVLDVFMGYKDADCDITDIFENSEANS 62

Query: 39  ---------------------DRSVGLVLAHL-----KPDLAFNVLHGNFGEDGLVQAIL 72
                                D+S      ++     K D+ F  LHG  GE G VQA  
Sbjct: 63  VKVSDIPTEAPDIKAIKASRPDQSPSFFGPNVIKICQKADVVFMALHGGEGESGKVQAAF 122

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKP 132
           +L  I YT +  L+SA++MDK  +K V+   GVPV     + +           P ++KP
Sbjct: 123 DLFGIKYTGNDYLSSAIAMDKQMTKNVIEKAGVPVPTGTSLKKENRKKFKFDKFPCIVKP 182

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192
             GGSS+G+ ++ + + +   L  +  W   D++++EQ++ G E + GV+   +L + EI
Sbjct: 183 NCGGSSIGVTIVNEPEELNAALDAAFEWE--DEVVVEQFISGREFSDGVIEGKALPIIEI 240

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
           A PK  FY Y+ KY++ ++    PA+I      ++++ A +A++A+G    +R DF+ D 
Sbjct: 241 A-PKQGFYDYKNKYAAGSAVETCPAEISHKATDKMRKYAVMAYKALGLTTYARIDFMMDK 299

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
               ++ LE N  PGMTP S+ P+ A   G  F +L
Sbjct: 300 -DENIYCLEANTLPGMTPTSLLPQEAKVTGMDFEDL 334


>gi|117924060|ref|YP_864677.1| D-alanine--D-alanine ligase [Magnetococcus sp. MC-1]
 gi|166198490|sp|A0L5M8|DDL_MAGSM RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|117607816|gb|ABK43271.1| D-alanine--D-alanine ligase [Magnetococcus sp. MC-1]
          Length = 310

 Score =  158 bits (400), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 110/302 (36%), Positives = 164/302 (54%), Gaps = 24/302 (7%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VL GG+S EREVSL SG+A   AL+  G++V  IDVDR +  VL     ++A   LHG
Sbjct: 8   IGVLYGGLSEEREVSLRSGQALFVALQSLGYQVVAIDVDRHITKVLEREGIEVAVLALHG 67

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI--------- 111
             GEDG +Q +LE + IPYT   + ASA+ MDK  SK++  S G+P    I         
Sbjct: 68  PMGEDGTIQGLLEFMGIPYTGPNVAASAICMDKGLSKRLFHSEGLPTPAWIELAGDHEEA 127

Query: 112 --LVNRFTMDSQHLISPPYVIKPLKGGSSLGI-IVIKKDQSIPLDLLQSSSWNHGDQLLI 168
             LV+ F  D          +KPL  GSS+GI   + KD+ I   + ++ S +H  + ++
Sbjct: 128 DELVDHFLGD----FHGAAFVKPLDSGSSVGISRAVGKDELI-RGVAKALSVSH--RCMV 180

Query: 169 EQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE-V 227
           E+ ++G ELT  ++   +  + EI VP   FY Y+ KY++  + +++PA    D   E V
Sbjct: 181 ERAIEGRELTLSILDGEAFPLIEI-VPIDGFYDYDHKYTAGRTNYLVPAPNLDDKSLEAV 239

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFR 286
            ++   A+   GCRG+ R+DF+ D       W LE+N  PGMT +S+ P+ A   G    
Sbjct: 240 VKIGLAAYHITGCRGLVRADFILD--GEGTPWLLELNTIPGMTELSLAPKAAHAVGIEMP 297

Query: 287 EL 288
           +L
Sbjct: 298 QL 299


>gi|325298578|ref|YP_004258495.1| D-alanine--D-alanine ligase [Bacteroides salanitronis DSM 18170]
 gi|324318131|gb|ADY36022.1| D-alanine--D-alanine ligase [Bacteroides salanitronis DSM 18170]
          Length = 326

 Score =  158 bits (400), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 104/323 (32%), Positives = 169/323 (52%), Gaps = 33/323 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKV-----------------SQIDVDRSVG 43
           +A++ GG SSE +VS+ S +   S ++   +KV                 S+  VD++  
Sbjct: 5   IAIVAGGDSSEHDVSMKSAEGIYSFIDKEIYKVYVIELSHKGWNAILEDGSKSTVDKNDF 64

Query: 44  LVLAH---LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
             + +   +KPD A+  +HG  GE+G++Q   ELL IPY+   +L SAL+ +K  + Q +
Sbjct: 65  SFMENGQKIKPDFAYITIHGTPGENGILQGYFELLGIPYSTCDVLVSALTFNKFMTNQYL 124

Query: 101 SSCGVPVCPSILVN-RFTMDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
            S GV +  S+LV+ R  +  + +I     P  IKP   GSS G+  +K  + I   L  
Sbjct: 125 KSFGVRIAESMLVHKRNGISDEEVIEKIGLPCFIKPNASGSSFGVTKVKTKEQIQPAL-- 182

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDAS----LDVTEIAVPKSDFYSYELKYSSLNST 212
            +++   D  +IE Y+DGIEL  G     +    L +TE+ V K++F+ +  KY+    T
Sbjct: 183 QAAFAESDDAMIEAYMDGIELANGCYKTRNKSVVLPITEV-VSKNEFFDFNAKYNG-QVT 240

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
            + PA++  ++   VQ+L    +  +GCRGI R D++      K+  LEIN  PGMT  S
Sbjct: 241 EITPARLSPELTGRVQKLTSAIYDILGCRGIVRVDYIITE-GEKINLLEINATPGMTSTS 299

Query: 273 IFPEMAAYAGYSFRELLLWMVED 295
             P+ A  AG   +E++  ++ED
Sbjct: 300 FIPQQARAAGIDMKEIMTDIIED 322


>gi|206561797|ref|YP_002232562.1| D-alanine--D-alanine ligase [Burkholderia cenocepacia J2315]
 gi|229463735|sp|B4E6J0|DDL_BURCJ RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|198037839|emb|CAR53783.1| D-alanine--D-alanine ligase B [Burkholderia cenocepacia J2315]
          Length = 313

 Score =  158 bits (400), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 106/301 (35%), Positives = 164/301 (54%), Gaps = 19/301 (6%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-VDRSVGLVLAHLKPD---LAFN 56
           +AVL GG S+EREVSL+SG+     L DAG      D  +R     L+ LK +    AFN
Sbjct: 12  VAVLFGGESAEREVSLTSGRLVLQGLRDAGVDAHPFDPAERP----LSALKDEGFVRAFN 67

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR- 115
            LHG +GE+G +Q  L+   I YT SG+L SAL +DK R+K V    GVP  P   V R 
Sbjct: 68  ALHGGYGENGQIQGALDFYGIRYTGSGVLGSALGLDKFRTKLVWQQTGVPTPPFETVMRG 127

Query: 116 -----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                   D    +  P  +KP   GSS+ ++ +K   ++P  L ++++  H   +++E+
Sbjct: 128 DDLAARATDIVAKLGLPLFVKPASEGSSVAVLKVKTADALPAALEEAAT--HDKIVIVEK 185

Query: 171 YVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
            ++ G E T  + GD  L + +I VP  +FY Y  KY + ++ +++P  +P     E++R
Sbjct: 186 SIEGGGEYTACIAGDLDLPLIKI-VPAGEFYDYHAKYVADDTQYLIPCGLPAQQEAELKR 244

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           +A  A   +GC    R+DF+ D  +   ++LE+N  PGMT  S+ P+ A   G S+ EL+
Sbjct: 245 IARRAFDVLGCTDWGRADFMLD-AAGNAYFLEVNTAPGMTDHSLPPKAARAVGISYSELV 303

Query: 290 L 290
           +
Sbjct: 304 V 304


>gi|255525501|ref|ZP_05392437.1| D-alanine/D-alanine ligase [Clostridium carboxidivorans P7]
 gi|255510769|gb|EET87073.1| D-alanine/D-alanine ligase [Clostridium carboxidivorans P7]
          Length = 300

 Score =  158 bits (400), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 98/298 (32%), Positives = 159/298 (53%), Gaps = 11/298 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGGISSEREVSL+SGK          ++V  I +D+   ++      D AF  LHG
Sbjct: 3   IGVIMGGISSEREVSLNSGKEIVKYFNKEKYEVVPIVIDKKDDIIAKAKDIDFAFIALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN---RFT 117
            FGEDG++QA+LE ++IPY+  G L S + MDK  +K+++ S G+     + V       
Sbjct: 63  KFGEDGIIQAVLETMDIPYSGCGPLTSGICMDKDITKKLLRSAGINTADWLSVKSVEEID 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            D    +  P V+KP  GGSS+   +IKK Q I   +    + ++  +++IE+Y+ G E+
Sbjct: 123 YDFIEKMEYPVVVKPNCGGSSVATNIIKKKQDIESAV--RLALDYDTEVMIEKYIKGDEI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC +M    L +  I  PK++F+ Y  KY+   S  ++  +    +  +++ +A    + 
Sbjct: 181 TCCIMNGKVLPIIAIK-PKAEFFDYTAKYADGGSDEII-VQFEEGLQNKIEEMALKCWKV 238

Query: 238 IGCRGISRSDFLFDPLSRKV-FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           + C    R D +   +   V + LE+N  PGMT  S+FP+ A     S+ +LL  + E
Sbjct: 239 LKCSVYVRVDMI---IKEGVPYVLELNTLPGMTKNSLFPKSAKAVNMSYTDLLDKITE 293


>gi|312126949|ref|YP_003991823.1| d-alanine/d-alanine ligase [Caldicellulosiruptor hydrothermalis
           108]
 gi|311776968|gb|ADQ06454.1| D-alanine/D-alanine ligase [Caldicellulosiruptor hydrothermalis
           108]
          Length = 364

 Score =  158 bits (400), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 101/338 (29%), Positives = 176/338 (52%), Gaps = 51/338 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKAC-------------------------ASALEDAGFKVSQ 35
           +AVL GG+S+E E+S+ S K+                             +ED   K +Q
Sbjct: 6   VAVLFGGVSTEHEISIVSAKSIMQNMDKEKYEIIPIGITKEGKWLLYTGKIEDLDSKWTQ 65

Query: 36  IDV------DRSVGLVL-------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
             +      DR+   ++         +  D+ F VLHG  GEDG VQ +LEL  IPY   
Sbjct: 66  FSIECFVSPDRTKKALVKIKDNEATFIDIDVVFPVLHGLNGEDGTVQGLLELSNIPYVGC 125

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTMDSQHLI-------SPPYVIKPL 133
           G+L+SA+ MDK  +K++    G+P    ++V  N ++    + I       S P  +KP 
Sbjct: 126 GVLSSAICMDKAFAKKLALLEGIPQGHFLVVYKNEYSAKKDYFIRRIESEFSYPVFVKPA 185

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
             GSS+GI   K  + + L + ++  + +  ++LIEQ ++  E+ C V+G+  + V+E  
Sbjct: 186 NSGSSVGISKAKDREDLALAIHEA--FLYDTKILIEQAINAREIECAVLGNDDVFVSEPG 243

Query: 194 --VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
             +P  +FYSYE KY   +S  ++PA++P ++ +E++ LA   ++   C G++R DF  D
Sbjct: 244 EIIPSREFYSYEAKYIDNSSELIIPARLPKEVIEEIKDLAARIYKIFECCGMARVDFFVD 303

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
             + KV++ E+N  PG T +S++P++  ++G  + +L+
Sbjct: 304 KDTNKVYFNEVNTIPGFTSISMYPKLMEFSGIPYSQLI 341


>gi|78059985|ref|YP_366560.1| D-alanine--D-alanine ligase [Burkholderia sp. 383]
 gi|77964535|gb|ABB05916.1| D-alanine--D-alanine ligase [Burkholderia sp. 383]
          Length = 342

 Score =  158 bits (400), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 104/323 (32%), Positives = 162/323 (50%), Gaps = 39/323 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSV------GLVLA---HLKP 51
           +AVL GG S ER+VS+SS      AL  AG  V  ID  R         L+L    H  P
Sbjct: 8   IAVLFGGASEERDVSISSAAQVIKALRSAGHSVVAIDTARGPLSPEEDALLLTSRIHDAP 67

Query: 52  -------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
                                    D+AF  LHG  GEDG +QA+L+L  +PYT SG + 
Sbjct: 68  PPSRVSTRSPSAAFDLLRCRELTEADVAFLALHGGTGEDGTIQAMLDLAGVPYTGSGHMG 127

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           SA++M+K  +K++ SS G+     +++     D    +  P ++KP + GS++G+ ++  
Sbjct: 128 SAIAMNKDMTKRLFSSVGIRTPRWMMLPCDFDDIPRRVGYPLIVKPNRQGSTVGLSLVHT 187

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
              +   +  +  ++   Q+++EQY+ G ELT GV+G  +L V EI +     + Y  KY
Sbjct: 188 PDELESAVRLARRFD--TQVMVEQYIAGRELTVGVLGAQALSVGEIVIEPGTIFDYRSKY 245

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW-LEINVQ 265
            + +     PA +P    +  QR+A  AH  +   G SR+D   D  ++ + W LE+N  
Sbjct: 246 QAGHVLEQFPATLPAATLEAAQRIALRAHALLELDGYSRTDLRLD--AQGILWCLEVNTL 303

Query: 266 PGMTPVSIFPEMAAYAGYSFREL 288
           PGMT  S+ P+ AA +G +F +L
Sbjct: 304 PGMTATSLLPQSAAASGIAFPQL 326


>gi|295677462|ref|YP_003605986.1| D-alanine/D-alanine ligase [Burkholderia sp. CCGE1002]
 gi|295437305|gb|ADG16475.1| D-alanine/D-alanine ligase [Burkholderia sp. CCGE1002]
          Length = 318

 Score =  158 bits (400), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 102/297 (34%), Positives = 157/297 (52%), Gaps = 11/297 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG+S+EREVS++SG+     L+D G      D        L       AFNVLHG
Sbjct: 12  VAVLSGGVSAEREVSINSGRLVLQGLQDGGVDAHLFDPSARPLSALKDEGFARAFNVLHG 71

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---FT 117
            +GE+G +Q  L+   I YT SG+L SAL +DK R+K V    G+P  P   V R   + 
Sbjct: 72  GYGENGQIQGALDFYGIHYTGSGVLGSALGLDKFRAKLVWQQLGIPTPPFEAVMRGDDYD 131

Query: 118 MDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD- 173
             ++ +++    P  +KP   GSS+ +I +K    +   +  ++ ++    +L+E+ ++ 
Sbjct: 132 ARARAIVAQLGLPLFVKPASEGSSVAVIKVKTAAKLSAAIAHAAKFD--TIVLVEKSIEG 189

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           G E T  + GD  L V  I VP  +FY Y+ KY S  + +++P  +       +Q LA  
Sbjct: 190 GGEYTACIAGDLDLPVILI-VPAGEFYDYDAKYISDTTQYLIPCGLTSSEEIRLQALARR 248

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A + +GCR   R+DF+ D      F LE+N  PGMT  S+ P+ A   G S+ EL++
Sbjct: 249 AFEVLGCRDWGRADFMLDGEGNPYF-LEVNTAPGMTDHSLPPKAARAVGISYEELIM 304


>gi|310642033|ref|YP_003946791.1| d-alanine--d-alanine ligase [Paenibacillus polymyxa SC2]
 gi|309246983|gb|ADO56550.1| D-alanine--D-alanine ligase [Paenibacillus polymyxa SC2]
          Length = 305

 Score =  158 bits (400), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 98/296 (33%), Positives = 169/296 (57%), Gaps = 14/296 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--LAHLKPDLAFNVL 58
           + V+MGG S+EREVSL +G+   + L+ + ++V  I +D+   L+  + H   D A   L
Sbjct: 3   IGVIMGGTSTEREVSLQTGQEMLNHLDRSRYEVVPIVIDQPADLIAQVQHTGIDFALLAL 62

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL----VN 114
           HG +GEDG VQ  LE L IPYT SG+LAS+L M+K  SK ++ S GV + P+ L    + 
Sbjct: 63  HGQYGEDGTVQGALETLGIPYTGSGVLASSLCMNKQLSKMLLKSAGV-LTPAGLCWQGMG 121

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
            +   +   +  P ++KP  GGSS+GI ++  ++ +   + ++ + +    +L+E ++ G
Sbjct: 122 DYDQQAVEQLGYPVIVKPNMGGSSIGIQLVHNEKELHSAIQKACALDQ--TILVEPFIQG 179

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
            ELTC ++    L +  I    S+++ Y+ KY +  +   +  ++P  I + V+  A  +
Sbjct: 180 TELTCSIVDGEVLPIIRIRSAHSEWFDYKAKYETGGAEEKV-IQLPPVIEQRVRETALAS 238

Query: 235 HQAIGCRGISRSDFLFDPLSRKV-FWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           ++ + C+  +R D +   L + V + LE+N  PGMT  S+ P+ AA AG +F +LL
Sbjct: 239 YRLLQCKVYARIDMI---LCQDVPYVLEVNTLPGMTANSLLPKSAAAAGITFTQLL 291


>gi|49087034|gb|AAT51407.1| PA4201 [synthetic construct]
          Length = 347

 Score =  158 bits (399), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 109/326 (33%), Positives = 165/326 (50%), Gaps = 45/326 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +AVL GG S ER+VS +SG     AL  AG +V  + VD + GL+ A  +          
Sbjct: 8   VAVLFGGSSEERDVSTASGAQVIQALRSAGHQV--LAVDTASGLLGAEEERRLLASKVKE 65

Query: 52  ---------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84
                                      D+ F  LHG  GEDG +QA+L+     YT SG 
Sbjct: 66  VPPDSDSLAIIRSGKQSLLSAGELAGVDVFFLALHGGTGEDGTLQALLDAGGFAYTGSGH 125

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
           LASA++MDK  +K++  + GV     ++      + +  +  P V+KP   GS++G+ ++
Sbjct: 126 LASAMAMDKDVAKRLFLAAGVETASWLMAPASEEEVREQLGFPLVVKPNSQGSTVGLSIV 185

Query: 145 KKDQSI--PLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSY 202
                +   ++L    +  +GD++++E++V G E+T GV+ D +L V EI +   + + Y
Sbjct: 186 HSQAELQPAIEL----AGRYGDEVMLERFVAGREVTVGVLDDQALPVGEILLGGQEVFDY 241

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
           E KY +     V PA +P  I  E QRLA   H+A+   G SR+DF  D   R ++ LE+
Sbjct: 242 EHKYQAGAVREVFPADLPPAIAAEAQRLALKVHRALKLSGYSRTDFRLDEQGR-LWCLEV 300

Query: 263 NVQPGMTPVSIFPEMAAYAGYSFREL 288
           N  PGMT  S+ P+ AA AG  F EL
Sbjct: 301 NTLPGMTATSLLPQAAAAAGIGFAEL 326


>gi|281412315|ref|YP_003346394.1| D-alanine/D-alanine ligase [Thermotoga naphthophila RKU-10]
 gi|281373418|gb|ADA66980.1| D-alanine/D-alanine ligase [Thermotoga naphthophila RKU-10]
          Length = 303

 Score =  158 bits (399), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 108/307 (35%), Positives = 165/307 (53%), Gaps = 25/307 (8%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP-DLAFNVLH 59
           +A+LMGG+S ERE+SL SG+    ALE  G++ +  DV       +  LK  D+ FNVLH
Sbjct: 3   VALLMGGVSREREISLRSGERVKKALEKLGYEYTVFDVKEDFLKEVDQLKSFDVVFNVLH 62

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G FGEDG +QAIL+ L I YT S   +S +  DK+ + + +    +   P  +  R  M+
Sbjct: 63  GTFGEDGTLQAILDFLGIRYTGSDAFSSMICFDKLATYRFLKD--IVEIPDFIEIREFME 120

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQ----SIPLDLLQSSSWNHGDQLLIEQYVDGI 175
           +  L   P V+KP + GSS+G+ + + D+    +I  DL Q  S      +++++Y+ G 
Sbjct: 121 TSPL-GYPCVVKPRREGSSIGVFICESDEEFQHAIKEDLPQYGS------VIVQEYIPGR 173

Query: 176 ELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE--VQR 229
           E+T  ++    G   L + E+  PK  FY Y  KY+   +  +LPA  PL+  +E  V+ 
Sbjct: 174 EMTVSILETEKGFEVLPILELR-PKRRFYDYVAKYTKGETEFILPA--PLNPSEERLVKE 230

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
            A  A    GCRG  R D +F   + + ++LEIN  PG+T  S  P  A   G  F EL+
Sbjct: 231 TALKAFVEAGCRGFGRVDGIFS--NGRFYFLEINTVPGLTETSDLPASAKAGGIEFEELV 288

Query: 290 LWMVEDA 296
             +++ A
Sbjct: 289 EIILKSA 295


>gi|320536772|ref|ZP_08036773.1| D-ala D-ala ligase [Treponema phagedenis F0421]
 gi|320146378|gb|EFW37993.1| D-ala D-ala ligase [Treponema phagedenis F0421]
          Length = 368

 Score =  157 bits (398), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 97/308 (31%), Positives = 161/308 (52%), Gaps = 34/308 (11%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGN 61
           AVL    ++E +VS+  G     AL     KV Q             L+ D+ F VLHG+
Sbjct: 62  AVLQIHTAAENQVSIIPGGGTKGAL-----KVGQ-----------RFLETDVIFPVLHGS 105

Query: 62  FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ 121
           FGEDG +Q + E+ E+PY   G+LAS+LSMDK ++K +  + G+P+ P   V + T D Q
Sbjct: 106 FGEDGTIQGLFEMAELPYVGCGVLASSLSMDKEKTKNLCQAAGLPIVPFFTVRKNTWDIQ 165

Query: 122 -----------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                        +  P  +KP + GSS+G  + K    +     ++ SW++  ++L+E 
Sbjct: 166 SERDLLIQEIEKELDYPLFVKPCRAGSSVGAGIAKDKNELLSRAEEAFSWDY--KILVEA 223

Query: 171 YVDGIELTCGVMGDAS---LDVTEIAVPKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKE 226
            +   E+ C V G+ +       EI +P   FY YE KY+  +   + +PA+I  D  K 
Sbjct: 224 CIPAREIECSVTGNETCIAYTPGEI-IPSHSFYDYEAKYTDPDGAILKIPAEITDDERKT 282

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           ++ +A  A++ +   G +R DF  D  ++K++  EIN  PG T +S+FP+M A +G  + 
Sbjct: 283 IREIAMKAYKTLDLSGFARVDFFIDKKTKKIYLNEINTIPGFTSISMFPKMCAASGLPYP 342

Query: 287 ELLLWMVE 294
           +L+  +++
Sbjct: 343 DLITLLLQ 350


>gi|107103718|ref|ZP_01367636.1| hypothetical protein PaerPA_01004789 [Pseudomonas aeruginosa PACS2]
 gi|116052238|ref|YP_788918.1| D-alanine-D-alanine ligase A [Pseudomonas aeruginosa UCBPP-PA14]
 gi|218889470|ref|YP_002438334.1| D-alanine-D-alanine ligase A [Pseudomonas aeruginosa LESB58]
 gi|254242882|ref|ZP_04936204.1| D-alanine-D-alanine ligase A [Pseudomonas aeruginosa 2192]
 gi|296387248|ref|ZP_06876747.1| D-alanyl-alanine synthetase A [Pseudomonas aeruginosa PAb1]
 gi|313109649|ref|ZP_07795593.1| D-alanine-D-alanine ligase A [Pseudomonas aeruginosa 39016]
 gi|115587459|gb|ABJ13474.1| D-alanine-D-alanine ligase A [Pseudomonas aeruginosa UCBPP-PA14]
 gi|126196260|gb|EAZ60323.1| D-alanine-D-alanine ligase A [Pseudomonas aeruginosa 2192]
 gi|218769693|emb|CAW25453.1| D-alanine-D-alanine ligase A [Pseudomonas aeruginosa LESB58]
 gi|310882095|gb|EFQ40689.1| D-alanine-D-alanine ligase A [Pseudomonas aeruginosa 39016]
          Length = 346

 Score =  157 bits (398), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 109/326 (33%), Positives = 165/326 (50%), Gaps = 45/326 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +AVL GG S ER+VS++SG     AL  AG +V  + VD + GL+ A  +          
Sbjct: 8   VAVLFGGSSEERDVSIASGAQVIQALRSAGHQV--LAVDTASGLLGAEEERRLLASKVKE 65

Query: 52  ---------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84
                                      D+ F  LHG  GEDG +QA+L+     YT SG 
Sbjct: 66  VPPDSDSLAIIRSGKQSLLSAGELAGVDVFFLALHGGTGEDGTLQALLDAGGFAYTGSGH 125

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
           LASA++MDK  +K++  + GV     ++        +  +  P V+KP   GS++G+ ++
Sbjct: 126 LASAMAMDKDVAKRLFLAAGVETASWLMAPASEEAVREQLGFPLVVKPNSQGSTVGLSIV 185

Query: 145 KKDQSI--PLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSY 202
                +   ++L    +  +GD++++E++V G E+T GV+ D +L V EI +   + + Y
Sbjct: 186 HSQAELQPAIEL----AGRYGDEVMLERFVAGREVTVGVLDDQALPVGEILLGGQEVFDY 241

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
           E KY +     V PA +P  I  E QRLA   H+A+   G SR+DF  D   R ++ LE+
Sbjct: 242 EHKYQAGAVREVFPADLPPAIAAEAQRLALKVHRALKLSGYSRTDFRLDEQGR-LWCLEV 300

Query: 263 NVQPGMTPVSIFPEMAAYAGYSFREL 288
           N  PGMT  S+ P+ AA AG  F EL
Sbjct: 301 NTLPGMTATSLLPQAAAAAGIGFAEL 326


>gi|107021640|ref|YP_619967.1| D-alanine--D-alanine ligase [Burkholderia cenocepacia AU 1054]
 gi|116688585|ref|YP_834208.1| D-alanine--D-alanine ligase [Burkholderia cenocepacia HI2424]
 gi|123245313|sp|Q1BZG1|DDL_BURCA RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|190359118|sp|A0K488|DDL_BURCH RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|105891829|gb|ABF74994.1| D-alanine--D-alanine ligase [Burkholderia cenocepacia AU 1054]
 gi|116646674|gb|ABK07315.1| D-alanine--D-alanine ligase [Burkholderia cenocepacia HI2424]
          Length = 313

 Score =  157 bits (398), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 105/301 (34%), Positives = 164/301 (54%), Gaps = 19/301 (6%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-VDRSVGLVLAHLKPD---LAFN 56
           +AVL GG S+EREVSL+SG+     L DAG      D  +R     L+ LK +    AFN
Sbjct: 12  VAVLFGGESAEREVSLTSGRLVLQGLRDAGVDAHPFDPAERP----LSALKDEGFVRAFN 67

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR- 115
            LHG +GE+G +Q  L+   I YT SG+L SAL +DK R+K V    GVP  P   V R 
Sbjct: 68  ALHGGYGENGQIQGALDFYGIRYTGSGVLGSALGLDKFRTKLVWQQTGVPTPPFETVMRG 127

Query: 116 -----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                   D    +  P  +KP   GSS+ ++ +K   ++P  L ++++  H   +++E+
Sbjct: 128 DDLAARATDIVAKLGLPLFVKPASEGSSVAVLKVKTADALPAALAEAAT--HDKIVIVEK 185

Query: 171 YVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
            ++ G E T  + GD  L + +I VP  +FY Y  KY + ++ +++P  +P +   E++R
Sbjct: 186 SIEGGGEYTACIAGDLDLPLIKI-VPAGEFYDYHAKYVADDTQYLIPCGLPAEQETELKR 244

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           +A  A   +GC    R+DF+ D  +   ++LE+N  PGMT  S+ P+ A   G  + EL+
Sbjct: 245 IARRAFDVLGCTDWGRADFMLD-AAGNAYFLEVNTAPGMTDHSLPPKAARAVGIGYSELV 303

Query: 290 L 290
           +
Sbjct: 304 V 304


>gi|167838001|ref|ZP_02464860.1| D-alanine--D-alanine ligase B [Burkholderia thailandensis MSMB43]
          Length = 312

 Score =  157 bits (398), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 106/300 (35%), Positives = 158/300 (52%), Gaps = 17/300 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD---LAFNV 57
           +AVL+GG SSEREVSL+SG+     L DAG      D  +     LA LK +    AFN 
Sbjct: 12  VAVLLGGESSEREVSLNSGRLVLQGLRDAGIDAHPFDPAQRP---LAALKDEGFVRAFNA 68

Query: 58  LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR-- 115
           LHG +GE+G +Q  L+   I YT SG+L SAL +DK R+K V    GVP  P   V R  
Sbjct: 69  LHGGYGENGQIQGALDFYGIRYTGSGVLGSALGLDKFRTKLVWQQTGVPTPPFETVMRGD 128

Query: 116 -FTMDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
            +   +Q +++    P  +KP   GSS+ +  +K   +  L      +  H   +++E+ 
Sbjct: 129 DYAARAQDIVAKLGVPLFVKPASEGSSVAVEKVKSADA--LPAALEEAAKHDKIVIVEKS 186

Query: 172 VD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
           ++ G E T  + GD  L + +I VP  +FY Y  KY + ++ +++P  +      E +R+
Sbjct: 187 IEGGGEYTACIAGDLDLPLIKI-VPAGEFYDYHAKYVANDTQYLIPCGLDAAREAEFKRV 245

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A  A   +GC    R+DF+ D      F LE+N  PGMT  S+ P+ A   G S+ EL++
Sbjct: 246 ARRAFDVLGCADWGRADFMLDAAGNPYF-LEVNTAPGMTDHSLPPKAARAVGISYSELVV 304


>gi|170731885|ref|YP_001763832.1| D-alanine--D-alanine ligase [Burkholderia cenocepacia MC0-3]
 gi|190359117|sp|B1JV80|DDL_BURCC RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|169815127|gb|ACA89710.1| D-alanine--D-alanine ligase [Burkholderia cenocepacia MC0-3]
          Length = 313

 Score =  157 bits (398), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 105/301 (34%), Positives = 164/301 (54%), Gaps = 19/301 (6%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-VDRSVGLVLAHLKPD---LAFN 56
           +AVL GG S+EREVSL+SG+     L DAG      D  +R     L+ LK +    AFN
Sbjct: 12  VAVLFGGESAEREVSLTSGRLVLQGLRDAGVDAHPFDPAERP----LSALKDEGFVRAFN 67

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR- 115
            LHG +GE+G +Q  L+   I YT SG+L SAL +DK R+K V    GVP  P   V R 
Sbjct: 68  ALHGGYGENGQIQGALDFYGIRYTGSGVLGSALGLDKFRTKLVWQQTGVPTPPFETVMRG 127

Query: 116 -----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                   D    +  P  +KP   GSS+ ++ +K   ++P  L ++++  H   +++E+
Sbjct: 128 DDLAARATDIVAKLGLPLFVKPASEGSSVAVLKVKTADALPAALAEAAT--HDKIVIVEK 185

Query: 171 YVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
            ++ G E T  + GD  L + +I VP  +FY Y  KY + ++ +++P  +P +   E++R
Sbjct: 186 SIEGGGEYTACIAGDLDLPLIKI-VPAGEFYDYHAKYVADDTQYLIPCGLPAEQEAELKR 244

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           +A  A   +GC    R+DF+ D  +   ++LE+N  PGMT  S+ P+ A   G  + EL+
Sbjct: 245 IARRAFAVLGCTDWGRADFMLD-AAGNAYFLEVNTAPGMTDHSLPPKAARAVGIGYSELV 303

Query: 290 L 290
           +
Sbjct: 304 V 304


>gi|289522342|ref|ZP_06439196.1| D-alanine--D-alanine ligase B [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
 gi|289504178|gb|EFD25342.1| D-alanine--D-alanine ligase B [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
          Length = 316

 Score =  157 bits (398), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 108/312 (34%), Positives = 160/312 (51%), Gaps = 23/312 (7%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKV--SQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           VL GG S EREVSL+SGKA   A    GF V    ++  + V  ++     D+ F  LHG
Sbjct: 5   VLYGGDSPEREVSLASGKAVLEAASRCGFDVLDGCVETVKDVVRLMNERDCDVIFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119
           ++GEDG +QA L+  +IPYT SG  A  L+M+K+ SK      G+P    +  N F    
Sbjct: 65  SWGEDGRLQAFLDFYDIPYTGSGSEACMLAMNKVLSKYRFQRDGIPTPDGVEANLFQEGI 124

Query: 120 -----------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168
                         L     VIKP + GS+LG+ VI     +   +  +SS+   D L+I
Sbjct: 125 NGACKKILEYYDYFLNGGKMVIKPARCGSTLGVSVITSSSDLYEAVQLASSY---DSLII 181

Query: 169 -EQYVDGIELTCGVMGDA---SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
            E+Y+ G E+T  V  D    +  + EI VPK+  YSY+ KY+  NS + +PA++   I 
Sbjct: 182 AERYISGKEITVAVWDDGKPQAFPIIEI-VPKNSLYSYKAKYTPGNSAYFVPAQLEDSIA 240

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
           K+ Q  A +AH ++GC   SR D   D      + LE+N  PG+T  S+ P+ A   G+ 
Sbjct: 241 KKAQEAALMAHISLGCELYSRVDMRLDTQGNP-YVLEVNTVPGLTSTSLVPKAAKAIGWD 299

Query: 285 FRELLLWMVEDA 296
           F   +  ++++ 
Sbjct: 300 FDRFVKELIQNT 311


>gi|242278456|ref|YP_002990585.1| D-alanine/D-alanine ligase [Desulfovibrio salexigens DSM 2638]
 gi|259645165|sp|C6C0B2|DDL_DESAD RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|242121350|gb|ACS79046.1| D-alanine/D-alanine ligase [Desulfovibrio salexigens DSM 2638]
          Length = 302

 Score =  157 bits (397), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 102/297 (34%), Positives = 160/297 (53%), Gaps = 11/297 (3%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSV-GLVLAHLKPDLAFNVLHGN 61
           ++ GG S EREVSLS  K    AL + G  V  +D  +    ++L     D AF  LHG+
Sbjct: 5   LIAGGWSEEREVSLSGAKGIEQALLELGHDVEFVDPAKDFKNILLLAEHADFAFINLHGS 64

Query: 62  FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV--PVCPSILVNRFTMD 119
            GEDGL+QA+L  +  PY  +   +S L+++K  +K V    G+  P    +        
Sbjct: 65  PGEDGLIQAMLNQVNCPYQGAEPESSFLTLNKAATKTVFDHHGILTPKWELVCAADGCKG 124

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
            Q L  PP  IKP  GGSSLG+   +  + +   +   + ++ GD  L+E+Y  GIE+TC
Sbjct: 125 LQDL-EPPVFIKPNSGGSSLGMTFARTAEELEKGI--ETVFSLGDSALVEEYTKGIEVTC 181

Query: 180 GVMGDASLDVTEIAVP-KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           G++    + +  I  P  ++F+ Y  KY+   +  + PA I   + +++Q++   AH+ +
Sbjct: 182 GILDGEPMPLILINPPDNAEFFDYHSKYALDGAEEICPAPIDPVLTEQIQQITAKAHKLL 241

Query: 239 GCRGISRSDFLFDPLSRKV-FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           G    SR+DF+   +S  V + LE+N  PGMTP S+ P+ A  AGYSF EL+  ++E
Sbjct: 242 GLTDYSRADFI---ISEGVPYLLEVNTLPGMTPTSLVPQAAKEAGYSFNELIAKLIE 295


>gi|284034929|ref|YP_003384860.1| D-alanine/D-alanine ligase [Kribbella flavida DSM 17836]
 gi|283814222|gb|ADB36061.1| D-alanine/D-alanine ligase [Kribbella flavida DSM 17836]
          Length = 315

 Score =  157 bits (397), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 110/306 (35%), Positives = 167/306 (54%), Gaps = 24/306 (7%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62
           VL GG+S ER+VSL SG+  A AL   G +V Q DVD S+   L +  PD  F VLHG  
Sbjct: 9   VLAGGLSHERDVSLRSGRRVADALRSVGVEVEQRDVDASLVERLRNDPPDAVFPVLHGVT 68

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT---MD 119
           GEDG ++ +L+L  +PY  +   A   + DK  +  +V S G+    S+++   T   + 
Sbjct: 69  GEDGALRQVLDLYGVPYVGADAAACRTAFDKPVASTMVRSAGLRSPESVVLGHDTFRELG 128

Query: 120 SQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
           +  L+         P V+KP +GGS+LG  +++    +P  ++  + + +G   LIE+YV
Sbjct: 129 AAALMEAVVGQLGLPLVVKPARGGSALGASIVRTIDELPSAMV--NCYAYGPVALIERYV 186

Query: 173 DGIELTCGVM--GDA--SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           +G E+   V+  GD   +L   EI  P S FY YE +Y++  +  V+PA++   +     
Sbjct: 187 EGTEVAVTVVDTGDGPWALPAVEIQ-PDSGFYDYEARYTAGATQFVVPARLDAAVAAACA 245

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSF-- 285
           + A  AH+A+G R +SRSD + D  ++ V W LE+NV PGMT  S+ P  A  AG     
Sbjct: 246 QAAVTAHRALGLRDLSRSDLVVD--AQGVPWFLEVNVAPGMTETSLVPLAAEAAGIELGV 303

Query: 286 --RELL 289
             R+LL
Sbjct: 304 LCRDLL 309


>gi|302872435|ref|YP_003841071.1| D-alanine/D-alanine ligase [Caldicellulosiruptor obsidiansis OB47]
 gi|302575294|gb|ADL43085.1| D-alanine/D-alanine ligase [Caldicellulosiruptor obsidiansis OB47]
          Length = 364

 Score =  157 bits (397), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 101/338 (29%), Positives = 176/338 (52%), Gaps = 51/338 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKAC-------------------------ASALEDAGFKVSQ 35
           +AVL GG+S+E E+S+ S K+                             +ED   K +Q
Sbjct: 6   VAVLFGGVSTEHEISIVSAKSIMQNMDKEKYEIIPIGITKEGKWLLYTGKIEDLDSKWTQ 65

Query: 36  IDV------DRSVGLVL-------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
             +      DR+   ++         +  D+ F VLHG  GEDG VQ +LEL  IPY   
Sbjct: 66  FSIECFVSPDRTKKALVKIKDNEATFIDIDVVFPVLHGLNGEDGTVQGLLELSNIPYVGC 125

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTMDSQHLI-------SPPYVIKPL 133
           G+L+SA+ MDK  +K++    G+P    ++V  N ++    + I       S P  +KP 
Sbjct: 126 GVLSSAICMDKAFAKKLALLEGIPQGHFLVVYKNEYSAKKDYFIRRIESEFSYPVFVKPA 185

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
             GSS+GI   K  + + L + ++  + +  ++LIEQ ++  E+ C V+G+  + V+E  
Sbjct: 186 NSGSSVGISKAKDREDLVLAIHEA--FLYDTKVLIEQAINAREIECAVLGNDEVFVSEPG 243

Query: 194 --VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
             +P  +FYSYE KY   +S  ++PA++P ++ +E++ LA   ++   C G++R DF  D
Sbjct: 244 EIIPSREFYSYEAKYIDDSSELIIPARLPKEVTEEIKDLAARIYKIFECCGMARVDFFVD 303

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
             + KV++ E+N  PG T +S++P++  ++G  + +L+
Sbjct: 304 KDTNKVYFNEVNTIPGFTSISMYPKLMEFSGIPYSQLI 341


>gi|258645244|ref|ZP_05732713.1| D-alanine--D-alanine ligase [Dialister invisus DSM 15470]
 gi|260402594|gb|EEW96141.1| D-alanine--D-alanine ligase [Dialister invisus DSM 15470]
          Length = 311

 Score =  157 bits (397), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 103/297 (34%), Positives = 161/297 (54%), Gaps = 15/297 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP---DLAFNV 57
           +AVLMGG+S E ++S  +G A   AL   G+   +++ + S   VL  LK    ++ F  
Sbjct: 8   VAVLMGGVSREADISRKTGTAILQALLSLGYHAVKVEYNPSC--VLKQLKAVGAEVVFIA 65

Query: 58  LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC---PSILVN 114
           LHG +GEDG +Q+ILEL +IPYT SG+ +SA++MDK+ S +V    GV +    P  L N
Sbjct: 66  LHGKYGEDGTIQSILELSKIPYTGSGVSSSAITMDKIISSRVFKDAGVRMAFSKPYYLKN 125

Query: 115 RFTMDSQHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                ++ +      P V+KP   GS++G+ ++ + + +   L +  +     ++L E Y
Sbjct: 126 GIDTVAESIEKNFKFPVVLKPACEGSTIGLEIVYEKEKLKEALKRVFAIE--SRILAEAY 183

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           +DG E T  V+   +L + +I  P S  Y +  KY+S  + +++PA +P     E+ R+A
Sbjct: 184 LDGKEFTIAVLNGKALPIIQIC-PHSGQYDFHSKYTSGATDYIVPAPLPGAAADEMTRMA 242

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
            L ++A  C G+ R DF  D      F LE N  PGMT  S+ P+ AA  G  F  L
Sbjct: 243 ILGYEAAECSGVVRFDFRTDKRGTP-FLLEANSIPGMTETSLVPKAAAAIGMDFPSL 298


>gi|171913133|ref|ZP_02928603.1| D-alanine--D-alanine ligase [Verrucomicrobium spinosum DSM 4136]
          Length = 307

 Score =  157 bits (397), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 105/298 (35%), Positives = 162/298 (54%), Gaps = 11/298 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG  SER VSL S ++   AL+  G +V +IDV  +   V   +   +A N++HG
Sbjct: 8   IAVLKGGPGSERAVSLKSAESVVEALKSLGAEVVEIDVTATDFTVPGDVV--VAVNMIHG 65

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG +QA+LE   + YT +G+  S ++ DK  SK+   + GVP  P   V +     
Sbjct: 66  TFGEDGQLQALLEKQGVAYTGAGVETSRVAFDKNLSKEKFVAGGVP-TPQSQVLKLDGVD 124

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           Q  ++ P V+KP + GSS+G+ ++  ++ +   L  + +  +G   L+E++VDG ELT G
Sbjct: 125 QLRLTLPVVVKPPREGSSVGVHIVHTEEELATAL--ADAKQYGQDTLVEEFVDGKELTVG 182

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNST----HVLPAKIPLDIYKEVQRLAFLAHQ 236
           V+G  +L V  I  P S FY    KY  ++ T    +  PA + ++  + VQ  A  A +
Sbjct: 183 VIGGEALPVIHIE-PVSGFYDINNKYPWMSGTGKTNYHCPADLDIETTQRVQEAALAAMK 241

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           A+G     R D +     +  F LEIN  PGMT  S+ P+ A  AG  F +L+  ++E
Sbjct: 242 AVGVEVYGRVDVMLRKDGQP-FVLEINTIPGMTVSSLLPKAARVAGLEFPQLMERIIE 298


>gi|78188875|ref|YP_379213.1| D-alanyl-alanine synthetase A [Chlorobium chlorochromatii CaD3]
 gi|123579964|sp|Q3AS55|DDL_CHLCH RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|78171074|gb|ABB28170.1| D-alanine--D-alanine ligase [Chlorobium chlorochromatii CaD3]
          Length = 360

 Score =  157 bits (397), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 96/289 (33%), Positives = 154/289 (53%), Gaps = 17/289 (5%)

Query: 17  SSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLE 76
           SS +  A+AL+      +Q   +R+    LA L  D+AF  LHG+FGEDG +Q  LE   
Sbjct: 70  SSREETAAALQQMVRNAAQAPCNRN----LAALGVDVAFLALHGSFGEDGRMQGFLETCG 125

Query: 77  IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---------NRFTMDSQHLISPP 127
           IPYT  G+LASAL+MDK  +K  V+  G+ V     +         N      +  +S P
Sbjct: 126 IPYTGCGVLASALTMDKALTKLCVADAGIAVAQGTNILSADYLANPNAVEASVEAQVSYP 185

Query: 128 YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS- 186
             +KP   GSS+GI  +   + +   L  + + +   ++++E  V G E+   V+G+A  
Sbjct: 186 LFVKPASLGSSIGISKVHNREELHPALQAACALDW--KVVVESTVKGREIEVAVLGNADP 243

Query: 187 -LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
              V     P  +FY ++ KY   ++   +PA+IP  + +EV+R A  A++A+GC G++R
Sbjct: 244 IASVCGEIEPGKEFYDFQDKYMGNSAKLFIPARIPESLQEEVRRSALTAYRALGCSGMAR 303

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            DF  D  +  V   E+N  PG T +S++P+M   +G S+R L+  ++E
Sbjct: 304 VDFFVDESTNSVVLNEVNTIPGFTDISMYPQMMEASGISYRNLITRLLE 352


>gi|192362236|ref|YP_001983383.1| D-alanine--D-alanine ligase [Cellvibrio japonicus Ueda107]
 gi|190688401|gb|ACE86079.1| D-alanine--D-alanine ligase [Cellvibrio japonicus Ueda107]
          Length = 328

 Score =  157 bits (397), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 101/302 (33%), Positives = 163/302 (53%), Gaps = 14/302 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VL GG+S+ERE+SL SG A  +ALEDAG     IDV  +V   +     D AF +LHG
Sbjct: 19  VGVLYGGLSAEREISLQSGAAVIAALEDAGIDHVAIDVGDNVIADIQAANIDRAFLMLHG 78

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSK------QVVSSCGVPVCPSILVN 114
             GEDG +QA+LE L IPYT S + +SAL+MDK+R+K         S+  +P     ++ 
Sbjct: 79  PGGEDGRIQALLEFLHIPYTGSDVQSSALAMDKLRTKFLWCGYSQSSAQHLPTPEFAVLT 138

Query: 115 R---FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
           R   F  + + L     ++KP   GSS+G+  +K  + +    ++++ +     +L E+ 
Sbjct: 139 RESDFVAELKRL-GGEVMVKPANEGSSIGMSRVKTAEDLQAAFVKATDYQ--GSVLAERL 195

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++   +L    +    S FY +  KY + ++ ++ P  +  +  +E+++LA
Sbjct: 196 IVGAEYTVAILDGEALPPIRLETDHS-FYDFNAKYIAEDTRYICPCGLSAEKEQELKQLA 254

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A   +GCRG  R D + D   +  + LE+N  PGMT  S+ P  A   G SF EL++ 
Sbjct: 255 LTAFNVLGCRGWGRVDVMADA-QQNFYLLEVNTAPGMTSHSLVPMAAKAVGLSFTELVVT 313

Query: 292 MV 293
           ++
Sbjct: 314 IL 315


>gi|153955531|ref|YP_001396296.1| D-alanine--D-alanine ligase [Clostridium kluyveri DSM 555]
 gi|219855927|ref|YP_002473049.1| hypothetical protein CKR_2584 [Clostridium kluyveri NBRC 12016]
 gi|189083038|sp|A5N1C9|DDL_CLOK5 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|254767726|sp|B9E560|DDL_CLOK1 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|146348389|gb|EDK34925.1| Ddl [Clostridium kluyveri DSM 555]
 gi|219569651|dbj|BAH07635.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 297

 Score =  157 bits (396), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 95/294 (32%), Positives = 164/294 (55%), Gaps = 12/294 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + ++MGGISSEREVSL+SGK+  + ++   +++  I +D+   +       D AF  LHG
Sbjct: 3   VGIIMGGISSEREVSLNSGKSIINYMDKNKYEIVPIVIDKKNDVFEKVKDIDFAFIALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF-TMD 119
            FGEDG++Q++ + ++IPY+    L S + MDK  SK+++ S  +     I +     +D
Sbjct: 63  KFGEDGIIQSVFQTMDIPYSGCSPLTSGICMDKDISKKLLYSANINTAEWICIKSIENID 122

Query: 120 SQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
             +L  +  P V+KP  GGSS+   +I+K + I  +     ++N+ ++++IE+Y++G E+
Sbjct: 123 YDYLEKMGYPVVVKPNSGGSSVATTIIEKSEDI--EEAARLAFNYDEEVMIEKYIEGDEI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQ 236
           TC ++   +L +  I   K  F+ Y  KY+   S   V+  + PL    +++ ++    +
Sbjct: 181 TCCILDGTALPILAIKPNKGSFFDYTSKYADGGSEEIVVEFEKPLQ--SKIEEISLKCWE 238

Query: 237 AIGCRGISRSDFLFDPLSRKV-FWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
              C+G  R D +   L  KV + LE+N  PG+T  S+FP+ A     SF ELL
Sbjct: 239 LFKCKGYVRVDMI---LKDKVPYVLELNTLPGLTKNSLFPKSANGVNISFTELL 289


>gi|325001011|ref|ZP_08122123.1| D-alanine--D-alanine ligase [Pseudonocardia sp. P1]
          Length = 311

 Score =  157 bits (396), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 108/312 (34%), Positives = 166/312 (53%), Gaps = 18/312 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           MAVL GG+S EREVSL SG+  A AL   G  V + DVD ++   L   +PD+    LHG
Sbjct: 1   MAVLAGGLSHEREVSLRSGRRLAGALRANGVDVREWDVDSALLERLHSDRPDVVAVALHG 60

Query: 61  NFGEDGLVQAILELLEIPY--THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT- 117
             GE+G VQ ILELL+IP+  T SG    A     ++++ V +    P   ++  + F  
Sbjct: 61  GEGENGAVQQILELLQIPFVGTPSGACRRAWDKPSVKAELVRAGLTTPDWVALPHSTFRE 120

Query: 118 MDSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           + +Q ++         P V+KP +GGS+LG+ V++    +P  ++  SS+ + D +L EQ
Sbjct: 121 LGAQGVLGAIVDRLGLPLVLKPDQGGSALGVQVVRSADDLPSAMV--SSFAYADTVLAEQ 178

Query: 171 YVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE 226
           +V G E+   V+ D     +L   E+ VP S FY Y  +Y+   +T   PA++  D+ + 
Sbjct: 179 FVAGTEVAVSVVHDGDEARALPPVEVEVP-SGFYDYTSRYTPGAATFHCPARLSSDVQQT 237

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           +   A  AH+ +G R +SR D + D   R V  LE+NV PG+T  S+ P   A  G    
Sbjct: 238 LAETALTAHRLLGMRDVSRMDAIVDGDGR-VHVLEMNVSPGLTDTSLLPTAVAADGSDLA 296

Query: 287 ELLLWMVEDASC 298
            +   +V+ A+ 
Sbjct: 297 TVYQALVDRAAT 308


>gi|238026134|ref|YP_002910365.1| D-alanine--D-alanine ligase [Burkholderia glumae BGR1]
 gi|237875328|gb|ACR27661.1| D-alanine--D-alanine ligase [Burkholderia glumae BGR1]
          Length = 313

 Score =  157 bits (396), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 105/300 (35%), Positives = 156/300 (52%), Gaps = 17/300 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD---LAFNV 57
           +AVL GG+S+EREVSL+SG+     L +AG      D        L+ LK +    AFN 
Sbjct: 12  VAVLFGGVSAEREVSLNSGRLVLQGLREAGIDAHLFDPSERP---LSALKDEGFVRAFNA 68

Query: 58  LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR-- 115
           LHG +GE+G +Q  L+   I YT  G+L SAL +DK R+K V    G+P  P   V R  
Sbjct: 69  LHGGYGENGQLQGALDFYGIRYTGPGVLGSALGLDKFRTKLVWQQTGIPTPPFETVMRGD 128

Query: 116 -FTMDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                +  +++    P  +KP   GSS+ +I +K   +  L      +  H   +++E+ 
Sbjct: 129 DHAARAAEIVAKLGLPLFVKPASEGSSVAVIKVKDAAA--LPAALDEAGRHDRIVIVEKS 186

Query: 172 VD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
           ++ G E T  + GD  L V  I VP  +FY Y  KY + ++ +++P  I      E +RL
Sbjct: 187 IEGGGEYTACIAGDLDLPVIRI-VPAGEFYDYHAKYLADDTQYLIPCGIEAAKETEFKRL 245

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A  A + +GC G  R+DF+ D      F LE+N  PGMT  S+ P+ A   G S+ EL++
Sbjct: 246 ARRAFEVLGCSGWGRADFMLDAAGNPYF-LEVNTAPGMTDHSLPPKAARAVGISYSELVV 304


>gi|222530007|ref|YP_002573889.1| D-alanyl-alanine synthetase A [Caldicellulosiruptor bescii DSM
           6725]
 gi|254767717|sp|B9MLC6|DDL_ANATD RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|222456854|gb|ACM61116.1| D-alanine/D-alanine ligase [Caldicellulosiruptor bescii DSM 6725]
          Length = 364

 Score =  157 bits (396), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 98/338 (28%), Positives = 174/338 (51%), Gaps = 51/338 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           +AVL GG+S+E E+S+ S K+    ++   ++V  I + +    +L              
Sbjct: 6   VAVLFGGVSTEHEISIVSAKSIMQNMDKEKYEVIPIGITKEGKWLLYTGKIEDLDSKWTQ 65

Query: 47  ------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
                                     +  D+ F VLHG  GEDG VQ +LEL  IPY   
Sbjct: 66  FSIECFVSPDRTKKALVKVKDNEATFIDIDVVFPVLHGLNGEDGTVQGLLELSGIPYVGC 125

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTMDSQHLI-------SPPYVIKPL 133
           G+L+SA+ MDK  +K++    G+P    ++V  N ++    + I       S P  +KP 
Sbjct: 126 GVLSSAICMDKAFAKKLALLEGIPQGHFLVVYKNEYSAKKDYFIRRIESEFSYPVFVKPA 185

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
             GSS+GI   K  + + L + ++  + +  ++LIEQ ++  E+ C V+G+  + V+E  
Sbjct: 186 NSGSSVGISKAKDREDLVLAIHEA--FLYDTKILIEQAINAREIECAVLGNDEVFVSEPG 243

Query: 194 --VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
             +P  +FYSYE KY   +S  ++PA++P ++ +E++ LA   ++   C G++R DF  D
Sbjct: 244 EIIPSREFYSYEAKYIDNSSELIIPARLPKEVTEEIKDLAGRIYKIFECCGMARVDFFVD 303

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
             + KV++ E+N  PG T +S++P++  ++G  + +L+
Sbjct: 304 KDTNKVYFNEVNTIPGFTSISMYPKLMEFSGIPYSQLI 341


>gi|148652338|ref|YP_001279431.1| D-alanine--D-alanine ligase [Psychrobacter sp. PRwf-1]
 gi|190359207|sp|A5WCU0|DDL_PSYWF RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|148571422|gb|ABQ93481.1| D-alanine--D-alanine ligase [Psychrobacter sp. PRwf-1]
          Length = 332

 Score =  157 bits (396), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 103/299 (34%), Positives = 161/299 (53%), Gaps = 15/299 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-VDRSVGLVLAHLKPDLAFNVLH 59
           +AV+ GG S+ER VSL SG A   AL+  G   +  D  D+ V  +  +   D  FNVLH
Sbjct: 38  VAVVFGGNSNERAVSLDSGNAVLQALQSQGIDATHFDPKDQDVTELKNY---DRVFNVLH 94

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G  GEDG +Q +L+ L +P T SG+LASA+ MDK+R+KQ+   CG+   P  ++   T D
Sbjct: 95  GRGGEDGQLQGLLDWLGLPQTGSGVLASAIGMDKVRTKQLWHGCGLSTAPFAVLGADT-D 153

Query: 120 SQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
            Q +++    P ++KP+  GSS+G+  +     +P     ++    GD ++ E+++ G E
Sbjct: 154 WQQIVNTLGLPLIVKPVHEGSSIGMSKVNTLDELPKAYEVAAG--CGDVVMAEKWITGRE 211

Query: 177 LTCGVMGDASLDVTEIAVPK-SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
            T  ++ D +  V  +     S+FY YE KY+  ++ + +P  +  +    +Q L+  A 
Sbjct: 212 FTIVIIDDEAYPVIRLQPADISNFYDYEAKYNRNDTQYHIPCGLSAEEEAHLQALSLAAF 271

Query: 236 QAIGCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +A+  +G  R D + D      FW LEIN  PGMT  S+ P  A   G +F E L W +
Sbjct: 272 KAVDAKGWGRIDAMQD--EEGNFWLLEINTVPGMTSHSLVPMAAKARGMNF-EQLCWHI 327


>gi|152987968|ref|YP_001346283.1| D-alanine-D-alanine ligase A [Pseudomonas aeruginosa PA7]
 gi|150963126|gb|ABR85151.1| D-alanine-D-alanine ligase A [Pseudomonas aeruginosa PA7]
          Length = 346

 Score =  157 bits (396), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 107/324 (33%), Positives = 163/324 (50%), Gaps = 41/324 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +AVL GG S ER+VS++SG     AL  AG +V  + VD + GL+ A  +          
Sbjct: 8   VAVLFGGSSEERDVSIASGAQVIQALRSAGHEV--LAVDTASGLLGAEEERRLLASKVKE 65

Query: 52  ---------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84
                                      D+ F  LHG  GEDG +QA+L+     YT SG 
Sbjct: 66  VPPDSDSLAIIRSGKQGLLSAGELAGVDVFFLALHGGTGEDGTLQALLDAGGFAYTGSGH 125

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
           LASA++MDK  +K++  + GV     ++        +  +  P V+KP   GS++G+ ++
Sbjct: 126 LASAMAMDKDVAKRLFLAAGVETASWLMAPASEEAVREQLGFPLVVKPNSQGSTVGLSIV 185

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYEL 204
                +   +    +  +GD++++E++V G E+T GV+ D +L V EI +   + + YE 
Sbjct: 186 HSQAELQPAI--ELAGRYGDEVMLERFVAGREVTVGVLDDQALPVGEILLGGQEVFDYEH 243

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           KY +     V PA +P  +  E QRLA   H+A+   G SR+DF  D   R ++ LE+N 
Sbjct: 244 KYQAGAVREVFPADLPPAVAAEAQRLALKVHRALKLSGYSRTDFRLDEQGR-LWCLEVNT 302

Query: 265 QPGMTPVSIFPEMAAYAGYSFREL 288
            PGMT  S+ P+ AA AG  F EL
Sbjct: 303 LPGMTATSLLPQAAAAAGIGFAEL 326


>gi|85712531|ref|ZP_01043579.1| D-alanine-D-alanine ligase B [Idiomarina baltica OS145]
 gi|85693665|gb|EAQ31615.1| D-alanine-D-alanine ligase B [Idiomarina baltica OS145]
          Length = 308

 Score =  157 bits (396), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 109/299 (36%), Positives = 162/299 (54%), Gaps = 12/299 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-VDRSVGLVLAHLKPDLAFNVLH 59
           +AVLMGG S+EREVSL SG A  +AL          D  +R +  +L+ L  D AF VLH
Sbjct: 9   VAVLMGGNSAEREVSLKSGHAVLNALIAQQIDAFAFDPAERPITDLLS-LGVDRAFIVLH 67

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL--VNRFT 117
           G  GEDG +Q  L+ L +PYT S +L  AL+MDK+R+KQ+  S  +PV PSI+  V    
Sbjct: 68  GRGGEDGAMQGALQSLNVPYTGSAVLGCALAMDKVRTKQIWQSLHLPVAPSIVIRVGSAQ 127

Query: 118 MDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
            D+  ++       ++KP   GSS+G+ V    ++  LD     +  +   +L+E++++G
Sbjct: 128 WDAAQILKQLGDKVIVKPALEGSSIGMSVAS--EAGELDAAIREALRYQSDVLVERWING 185

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
            E T  ++ D +L V  +  P   FY +  KY + ++ +  PA +  +  + ++ LA LA
Sbjct: 186 KEYTVALLNDEALPVIRLQTPHQ-FYDFSAKYQANDTQYHCPAGLSDEDEEYLRHLAVLA 244

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
             AI  RG  R D + D    + F LE N  PGMT  S+ P  A   G SF E L+W +
Sbjct: 245 FSAIDGRGWGRIDAMRDD-EGQWFLLEANAVPGMTEKSLVPMAAKQYGLSF-EQLVWNI 301


>gi|327399131|ref|YP_004340000.1| D-alanine--D-alanine ligase [Hippea maritima DSM 10411]
 gi|327181760|gb|AEA33941.1| D-alanine--D-alanine ligase [Hippea maritima DSM 10411]
          Length = 294

 Score =  157 bits (396), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 104/301 (34%), Positives = 163/301 (54%), Gaps = 15/301 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK--PDLAFNVL 58
           +AV+ GG SSERE+S+ +G A  + L    F+   I  D +   +   +K  P + F  L
Sbjct: 3   VAVVCGGNSSEREISIITGNAVYNGLLK-NFEAECIVCDNARDCLDKIIKSSPSVVFIAL 61

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
           HG FGE+G +QA LE L I +T      S ++M+K  +K ++    +P     L+ +   
Sbjct: 62  HGGFGENGQLQAALESLGIKHTGCSFAESNIAMNKFATKAILKKLSIPTAEFKLIKKVE- 120

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQS---IPLDLLQSSSWNHGDQLLIEQYVDGI 175
           + +++   P  IKP   GSS+ +     +     I  +LL+       ++L+IE+ + G 
Sbjct: 121 EIENIDFYPICIKPNNEGSSVDVNFANNENQAKYISQNLLKKH-----NELIIEKRLSGK 175

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
           ELT GV+   +L + EI  PKS FY Y+ KY+   + +++PA +  +I K ++ +A  A 
Sbjct: 176 ELTVGVLFGKALPIIEIR-PKSGFYDYKNKYTKGATDYIVPAPLENNIEKLIKDIAVKAF 234

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           +AIGC+  +R DF+ D      + LEIN  PGMTP S+ P+ A  AG SF EL   +VE 
Sbjct: 235 EAIGCKSYARIDFILD--GNVPYLLEINTIPGMTPTSLLPKAAKAAGISFEELTKMIVEG 292

Query: 296 A 296
           A
Sbjct: 293 A 293


>gi|148269801|ref|YP_001244261.1| D-alanyl-alanine synthetase A [Thermotoga petrophila RKU-1]
 gi|166198512|sp|A5IKG2|DDL_THEP1 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|147735345|gb|ABQ46685.1| D-alanine--D-alanine ligase [Thermotoga petrophila RKU-1]
          Length = 303

 Score =  157 bits (396), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 105/303 (34%), Positives = 163/303 (53%), Gaps = 17/303 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP-DLAFNVLH 59
           +A+LMGG+S ERE+SL SG+    ALE  G++ +  DV       +  LK  D+ FNVLH
Sbjct: 3   VALLMGGVSREREISLRSGERVKKALEKLGYEYTVFDVKEDFLKEVDQLKSFDVVFNVLH 62

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G FGEDG +QAIL+ L I YT S   +S +  DK+ + + +    +   P  +  R  M+
Sbjct: 63  GTFGEDGTLQAILDFLGIRYTGSDAFSSMICFDKLATYRFLKD--IVEIPDFIEIREFME 120

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
           +  L   P V+KP + GSS+G+ + + D+      L+     +G  +++++Y+ G E+T 
Sbjct: 121 TSPL-GYPCVVKPRREGSSIGVFICESDEEFQ-HALKEDLPRYG-SVIVQKYIPGREMTV 177

Query: 180 GVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE--VQRLAFL 233
            ++    G   L + E+  PK  FY Y  KY+   +  +LPA  PL+  +E  V+  A  
Sbjct: 178 SILETEKGFEVLPILELR-PKRRFYDYVAKYTKGETEFILPA--PLNPSEERLVKETALK 234

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           A    GCRG  R D +F   + + ++LEIN  PG+T  S  P  A   G  F EL+  ++
Sbjct: 235 AFVEAGCRGFGRVDGIFS--NGRFYFLEINTVPGLTETSDLPASAKAGGIEFEELVEIIL 292

Query: 294 EDA 296
           + A
Sbjct: 293 KSA 295


>gi|328675328|gb|AEB28003.1| D-alanine--D-alanine ligase [Francisella cf. novicida 3523]
          Length = 296

 Score =  156 bits (395), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 108/300 (36%), Positives = 160/300 (53%), Gaps = 14/300 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59
           + VL GG S EREVSL SGKA   +L   G+    +D   + +   L  LKPD  F  LH
Sbjct: 6   IVVLYGGDSPEREVSLKSGKAVLDSLISQGYDAVGLDASGKELVAKLLELKPDKCFVALH 65

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV--SSCGVPVCPSILVNRFT 117
           G  GE+G V A+LE+L I +T S + +S ++MDKM SK++        P+   +    F 
Sbjct: 66  GEDGENGRVSALLEMLGIKHTSSSMKSSVITMDKMISKEIWMHHRMPTPMAKFLTAKLFA 125

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            D    IS P  +KP  GGSS+    +K  Q +     ++S +    +++IEQ+V G E+
Sbjct: 126 EDE---ISFPVAVKPSSGGSSIATFKVKSIQELKHAYEEASKYG---EVMIEQWVTGKEI 179

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           T  ++ D       I  P+++FY YE KYS  +  H  P+ +      EV++LA  A+  
Sbjct: 180 TVAIVNDEVYSSVWIE-PQNEFYDYESKYSGKSIYHS-PSGLCEQKELEVRQLAKKAYDL 237

Query: 238 IGCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +GC G +R DF++D   R  F+ +EIN  PGMT  S+ P+ AA  G  F   +  ++E A
Sbjct: 238 LGCSGHARVDFIYD--DRGNFYIMEINSSPGMTENSLSPKSAAAEGVDFDSFVKRIIEQA 295


>gi|315648570|ref|ZP_07901668.1| D-alanine--D-alanine ligase [Paenibacillus vortex V453]
 gi|315276049|gb|EFU39396.1| D-alanine--D-alanine ligase [Paenibacillus vortex V453]
          Length = 332

 Score =  156 bits (395), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 98/298 (32%), Positives = 162/298 (54%), Gaps = 11/298 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGG+SSEREVSL++G+   S L+   ++V  I++D    L+      D+A   LHG
Sbjct: 3   VGVIMGGVSSEREVSLATGREMLSHLDKNRYEVCPIEIDDKRELISKTEGIDIALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF---- 116
            +GEDG VQ  L+ L IPYT S +L+S++ MDK  SK+++   G+     ++V       
Sbjct: 63  KYGEDGTVQGTLDSLGIPYTGSDVLSSSVCMDKDLSKKLLRCEGLFTADWVVVGSMQELA 122

Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
             D + L   P V+KP  GGSS+G  +++    +   + ++  W+    ++IEQ++DG E
Sbjct: 123 AADVEGL-GFPVVVKPNAGGSSIGTRIVRIQDELASAVEEALQWDRA--VMIEQFIDGEE 179

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +TC ++    L +  I  P S+F+ Y  KY    +   +  ++P ++ K V   A   ++
Sbjct: 180 ITCPILNGEMLPIVSIK-PNSEFFDYTSKYVEGEADEQV-IELPPELRKAVNAAAIQCYK 237

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           A+ C   +R D +        + LE+N  PG+T  S+ P  A  AG+SF  LL  ++E
Sbjct: 238 ALKCSVYARIDIILK--DNIPYILEVNTLPGLTRTSLLPRSAEAAGFSFSSLLDAIIE 293


>gi|90416338|ref|ZP_01224270.1| D-alanylalanine synthetase [marine gamma proteobacterium HTCC2207]
 gi|90332063|gb|EAS47277.1| D-alanylalanine synthetase [marine gamma proteobacterium HTCC2207]
          Length = 302

 Score =  156 bits (395), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 104/291 (35%), Positives = 154/291 (52%), Gaps = 6/291 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + +L GG SSEREVSL SG+A   AL + G  V  ID D ++   L   + DL F  LHG
Sbjct: 8   VGLLYGGTSSEREVSLMSGQAIHRALLNMGVDVVAIDADDNLLQSLPGHQLDLVFIALHG 67

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q  LE L++PYT SG+LASAL+MDK+R KQ+    G+P     L+   +  S
Sbjct: 68  PGGEDGTLQGALEYLKLPYTGSGVLASALAMDKLRCKQMWQGIGLPTTDFALLEADSDWS 127

Query: 121 QHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
             L  +    ++KP   GSS+G+      + +      +S +N    ++ E  + G E T
Sbjct: 128 AELQRLGGQVMVKPAAEGSSIGMSCAATPEQLQAAWADASQYNTA--VIAEPLLPGPEYT 185

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             ++    L    I    ++FY Y+ KY S  + ++ P+++     +E+Q L   A  ++
Sbjct: 186 VAILDGQVLPSIRIE-SNAEFYDYQAKYFSDQTQYLCPSELSESREQELQTLCLQAFDSV 244

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           GCRG  R D + D   +    LE+N  PGMT  S+ P  A  AG SF +L+
Sbjct: 245 GCRGWGRVDVMVDHQGQFQL-LEVNTVPGMTSHSLVPMAAKAAGLSFDQLV 294


>gi|146296394|ref|YP_001180165.1| D-alanine--D-alanine ligase [Caldicellulosiruptor saccharolyticus
           DSM 8903]
 gi|166198476|sp|A4XJ89|DDL_CALS8 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|145409970|gb|ABP66974.1| D-alanine--D-alanine ligase [Caldicellulosiruptor saccharolyticus
           DSM 8903]
          Length = 364

 Score =  156 bits (395), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 105/346 (30%), Positives = 175/346 (50%), Gaps = 53/346 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGF------------------KVSQIDVDRSV 42
           +AVL GG+S+E EVS+ S K+    L+   +                  K+  +D   ++
Sbjct: 6   VAVLFGGVSTEHEVSIVSAKSVMQNLDKEKYEIIPIGITKEGKWLLYTGKIEDLDSKWTM 65

Query: 43  GLVLAHLKPD--------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
             +   + PD                    + F VLHG  GEDG VQ +LEL  IPY   
Sbjct: 66  YSIECFISPDRTKKALVKIKDSEATFIDIDVVFPVLHGLNGEDGTVQGLLELSGIPYVGC 125

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNR---------FTMDSQHLISPPYVIKPL 133
           G+L+SAL MDK  +K++    G+P    +++ +         F    +   S P  +KP 
Sbjct: 126 GVLSSALCMDKAFAKKLALLEGIPQGHFLVIYKDEYLSKKEYFIRRIESEFSYPVFVKPA 185

Query: 134 KGGSSLGIIVIK-KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192
             GSS+GI   K KD+ I   L    ++ +  ++LIEQ ++  E+ C V+G++ + V+ +
Sbjct: 186 NSGSSVGISKAKDKDELI---LAIHEAFLYDTKILIEQAINAREIECAVLGNSEILVSAL 242

Query: 193 A--VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
              VP  +FYSYE KY   +S  ++PAK+   +  E++ LA   ++   C G++R DF  
Sbjct: 243 GEIVPSREFYSYEAKYIDGSSELIIPAKLEKQVEDEIKELAVKIYKLFECSGMARIDFFV 302

Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           D  + KV++ E+N  PG T +S++P++  Y+G  + +LL  +++ A
Sbjct: 303 DKETNKVYFNEVNTIPGFTSISMYPKLMEYSGIPYPQLLDKLIQLA 348


>gi|169829946|ref|YP_001700104.1| D-alanine--D-alanine ligase [Lysinibacillus sphaericus C3-41]
 gi|168994434|gb|ACA41974.1| D-alanine--D-alanine ligase [Lysinibacillus sphaericus C3-41]
          Length = 308

 Score =  156 bits (395), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 99/292 (33%), Positives = 161/292 (55%), Gaps = 9/292 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGG SSE++VS+ +GK   + L    + V +I ++    ++      D+A   LHG
Sbjct: 10  VGVIMGGTSSEKQVSMMTGKEMVAHLNKQKYDVVEILLEDHQEVIEKVQGIDVALLALHG 69

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---FT 117
            FGEDG +Q +LE L IPYT SG+LAS+L MDK  +K+++   G+     + + R     
Sbjct: 70  KFGEDGTIQGVLETLGIPYTGSGLLASSLCMDKNMAKKILRYEGIATPDWMHLIRGEVLP 129

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
           +    LI  P V+KP  GGSS+G+ ++    ++   + +   W+  ++++IEQY+ G E+
Sbjct: 130 LQDIELIGYPLVVKPNAGGSSVGVQIVHDRNALLAAVSEVFKWD--NEIIIEQYMIGDEI 187

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC ++ D  L V  I    + F+ Y+ KY    ST   P ++PL I+  V + A  ++++
Sbjct: 188 TCPILNDKLLPVLSIK-HTAVFFDYQAKYDD-ASTIEEPVELPLAIHDRVAKAAMTSYKS 245

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           + C   +R D L        + LE+N  PGMT  S+ P+ A  AG S+  LL
Sbjct: 246 LKCSVYARVDMLIK--EGVPYVLEVNTLPGMTQNSLLPKSALAAGISYSALL 295


>gi|154482959|ref|ZP_02025407.1| hypothetical protein EUBVEN_00657 [Eubacterium ventriosum ATCC
           27560]
 gi|149736243|gb|EDM52129.1| hypothetical protein EUBVEN_00657 [Eubacterium ventriosum ATCC
           27560]
 gi|254966999|gb|ACT97535.1| putative D-alanine-D-alanine ligase [uncultured organism]
          Length = 343

 Score =  156 bits (395), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 108/335 (32%), Positives = 168/335 (50%), Gaps = 46/335 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALE---------DAGFKVSQIDV------------- 38
           + VL GG S+EREVS++SG     AL          D  F +  ID+             
Sbjct: 7   IVVLCGGNSTEREVSINSGSMVCEALRKKNHNAILMDVYFGLEDIDIFEKSASKYDVESV 66

Query: 39  -------------DRSV----GLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81
                        DR       ++    K D+ F  LHG  GEDG  QA  +L  I YT 
Sbjct: 67  KKNIQSLSDKVSEDRRSFFGNNVIEICQKADIVFMALHGKNGEDGKCQAAFDLYGIKYTG 126

Query: 82  SGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--FTMDSQHLISPPYVIKPLKGGSSL 139
           SG LASA+ MDK  +KQ+  S GVP   S+ + +   T    + +  P V+K   GGSS+
Sbjct: 127 SGHLASAIGMDKGVTKQIFMSKGVPTAKSVWIKKGESTDLKDYGMKVPVVVKACNGGSSV 186

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDF 199
           G++++ ++     D ++ + +   +Q+L+E ++ G E + GV+   +L V EI +P+  +
Sbjct: 187 GVVLVHQESEYE-DAVK-TCFELDNQILVEDFIKGREFSIGVINKKALPVVEI-IPRDGW 243

Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
           Y Y+ KY+   +  V PA +  ++ K++Q++A  A  AIGC   +R+D + D     +F 
Sbjct: 244 YDYKNKYNGA-TEEVCPANLNDELTKKIQKVAEDACNAIGCEPYARADVMMDA-DGNMFC 301

Query: 260 LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           LE+N  PGMT  S+ P+ A   G  F  L  ++VE
Sbjct: 302 LEVNTLPGMTATSLVPQEAKAVGMDFPTLCDYLVE 336


>gi|307719433|ref|YP_003874965.1| D-alanine--D-alanine ligase [Spirochaeta thermophila DSM 6192]
 gi|306533158|gb|ADN02692.1| D-alanine--D-alanine ligase [Spirochaeta thermophila DSM 6192]
          Length = 364

 Score =  156 bits (395), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 108/339 (31%), Positives = 166/339 (48%), Gaps = 48/339 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKV---------------------SQIDVD 39
           +A+L GG S E EVS  S  A    L+   F+V                       ++V 
Sbjct: 9   IALLYGGRSGEHEVSCRSAAAIYEHLDRERFEVLPVGITHAGRWYLQREVRVKEGALEVA 68

Query: 40  RSVGLVL------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87
              G V+              L+ D  F ++HG FGEDG +Q +LE   + Y  +G+L S
Sbjct: 69  EDEGAVVWVVPGAGLWCGGEDLRVDCVFPIVHGTFGEDGTLQGLLEQAGVAYVGAGVLGS 128

Query: 88  ALSMDKMRSKQVVSSCGVPVCPSILV--------NRFTMDSQHLISPPYVIKPLKGGSSL 139
           AL MDK R+K V    G+P+ P ++V        N   +  +  +  P  +KP +GGSS+
Sbjct: 129 ALGMDKDRAKAVWLQAGLPILPFMVVRRESLPPWNELAIQLRRRMEFPVFVKPARGGSSV 188

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA---SLDVTEIAVPK 196
           GI  +  ++   L      ++ +  +++IEQ ++  E+ CGV G+    S    EI +  
Sbjct: 189 GISKVHDERG--LKKACELAFTYDSKIVIEQGIEAREIECGVWGNEDVRSFPPGEI-IHT 245

Query: 197 SDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255
            +FY YE KY       + +PA++  +  + V+ LA  A++A+ C G +R DFL D  + 
Sbjct: 246 HEFYDYEAKYEDTEGLQLKIPAELTPEQQEYVRSLAEKAYRALECEGFARVDFLLDTETE 305

Query: 256 KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             +  EIN  PG TPVS+FP MA  AG SF +LL  ++E
Sbjct: 306 VFYLNEINTLPGFTPVSMFPLMAQAAGISFPDLLTRLIE 344


>gi|87122625|ref|ZP_01078502.1| D-alanylalanine synthetase [Marinomonas sp. MED121]
 gi|86162083|gb|EAQ63371.1| D-alanylalanine synthetase [Marinomonas sp. MED121]
          Length = 320

 Score =  156 bits (395), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 106/299 (35%), Positives = 166/299 (55%), Gaps = 17/299 (5%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---DRSVGLV--LAHLKPDLAFNV 57
           V+ GG  +EREVSL SG    +AL+++G++ + +D+   D S+  V  L     DLAF  
Sbjct: 10  VIYGGRCAEREVSLQSGGLVLAALQESGYQATGLDLYGQDLSLNPVEQLQSADFDLAFIA 69

Query: 58  LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117
           LHG  GEDG +QA+LEL+  PYT S  LA   +MDK+ SK+     GVP  P+ L  R  
Sbjct: 70  LHGGEGEDGRIQALLELMGKPYTGSSPLACGFAMDKVLSKKYWQGIGVPT-PTYLAFRAP 128

Query: 118 MDS-----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
             S     +  ++ P ++KP + GS++GI   K +    L+   + +  +   +L+EQ++
Sbjct: 129 DASDIDAIEDELAYPVIVKPSREGSTIGI--NKANDRTQLESALAKAREYDSDVLVEQFI 186

Query: 173 DGIELTCGVMGDASLDVTEI-AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
            G E T  ++ D +  V  + A  + + Y Y+ KY + ++ ++LP+ +  D    VQ++A
Sbjct: 187 AGPEFTVTIIDDVAYPVIGLKASDEHELYDYDAKYIANDTQYLLPSGLLEDDELYVQKIA 246

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
             A+Q++GC G  R D + D     VFW LE+N  PGMT  S+ P  AAY   S+  L+
Sbjct: 247 LDAYQSLGCSGWGRVDVMQD--QAGVFWVLEVNTSPGMTSHSLVPMSAAYVDISYSALV 303


>gi|256424912|ref|YP_003125565.1| D-alanyl-alanine synthetase A [Chitinophaga pinensis DSM 2588]
 gi|256039820|gb|ACU63364.1| D-alanine/D-alanine ligase [Chitinophaga pinensis DSM 2588]
          Length = 329

 Score =  156 bits (394), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 105/330 (31%), Positives = 170/330 (51%), Gaps = 36/330 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------SVGLVLAHLKPDL 53
           +A++ GG S E  +S+ S       L+ + + V +I V R       S G ++A  + D 
Sbjct: 5   IALVAGGYSGEYVISVQSAAVIEKHLDSSKYNVYKISVTRDGWNYTGSDGQLIAVDRNDF 64

Query: 54  AFNV-------------LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
              +             +HG  GEDG +Q   E+L IP+T  G++ SAL+ +K    +VV
Sbjct: 65  TLTINGNKVIFDAVFIGIHGTPGEDGRLQGYFEMLGIPFTSCGMVTSALTFNKSYCNKVV 124

Query: 101 SSCGVPVCPSILVNRFT---MDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDL 154
           +S GV V  S  V+ F     D Q ++     P  +KP +GGSS+G+  +   + +   +
Sbjct: 125 ASLGV-VNVSKSVHIFKDQPFDIQAILQELKLPVFVKPAEGGSSIGMSKVNTAEELAPAI 183

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS----LDVTEIAVPKSDFYSYELKYSSLN 210
               ++N   Q+LIE++V G E+TCG+         L VTEI +   +F+ YE KY+   
Sbjct: 184 --EKAFNEDVQILIEEFVKGREITCGLYRSNGAFTVLPVTEI-ISSKEFFDYEAKYTPGV 240

Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270
           S  V PA+ P +I  ++Q  A   +  + CRGI R DF+++  S ++F+LE+N  PG + 
Sbjct: 241 SREVTPAEAPNEIVNQIQETAKKLYNKLNCRGIVRMDFIWEEASNRLFFLEVNTMPGQSE 300

Query: 271 VSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
            SI P+    AG + +E    ++E+  CLR
Sbjct: 301 NSIVPQQVRAAGKTLQEFYGTLIEE--CLR 328


>gi|50086472|ref|YP_047982.1| D-alanine--D-alanine ligase [Acinetobacter sp. ADP1]
 gi|81392119|sp|Q6F705|DDL_ACIAD RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|49532448|emb|CAG70160.1| D-alanine-D-alanine ligase B [Acinetobacter sp. ADP1]
          Length = 309

 Score =  156 bits (394), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 101/294 (34%), Positives = 162/294 (55%), Gaps = 14/294 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-VDRSVGLVLAHLKPDLAFNVLH 59
           +AVL GG S+ER+VSL SG+A   AL  +G +    D  +RSV  ++ +   D AF VLH
Sbjct: 10  VAVLFGGKSAERDVSLDSGQAVLDALLRSGVQAEAFDPKERSVTELVGY---DRAFIVLH 66

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G  GEDG +Q +LE L+IPYT +G+  SA+ MDK+++KQ+     +P  P  +V++ + D
Sbjct: 67  GRGGEDGQIQGVLEWLDIPYTGTGVQGSAIGMDKIKTKQIWQGSDLPTAPYRIVSKDS-D 125

Query: 120 SQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
              +++    P +IKP+  GSS+G+  ++K +     + ++++  H   ++ E+++ G E
Sbjct: 126 LNEIVASLGLPVIIKPVHEGSSIGMSKVEKIEDFAPAIEKATA--HDAIVMAEKWITGRE 183

Query: 177 LTCGVMGDASLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
            T  V+   +L V  +  P+   FY Y+ KY   +  + +P+ +     K++Q L   A 
Sbjct: 184 YTIVVLNGKALPVIRLQPPQDVAFYDYDAKYQRNDVQYGIPSGLSDSDEKKLQELTLRAF 243

Query: 236 QAIGCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFREL 288
             +G  G  R D + D      FW LEIN  PGMT  S+ P+ A   G  F  L
Sbjct: 244 HTVGASGWGRVDAMQDEHGN--FWLLEINTVPGMTSHSLVPKAAQAIGIDFDAL 295


>gi|238918680|ref|YP_002932194.1| D-alanine--D-alanine ligase B [Edwardsiella ictaluri 93-146]
 gi|238868248|gb|ACR67959.1| D-alanine--D-alanine ligase B [Edwardsiella ictaluri 93-146]
          Length = 300

 Score =  156 bits (394), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 106/303 (34%), Positives = 163/303 (53%), Gaps = 19/303 (6%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+ER+VSL SG+A  + L+ AG      D  R     L     +  F  L+G
Sbjct: 5   VAVLLGGTSAERDVSLLSGQAVLNGLKQAGIDAYPADTRRFPATQLREAGFERVFIALYG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR----- 115
                G +Q +LE L++PYT S ++ASAL+MDK+RSKQV  + G+PV P + ++R     
Sbjct: 65  R----GSLQGVLEFLQLPYTGSDVMASALTMDKLRSKQVWQAAGLPVVPYVAISREQFDE 120

Query: 116 -FTMDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
             TMD+ H I+    P ++KP + GSS+G+   K  +    D     +  H D++LIE++
Sbjct: 121 GLTMDTLHEINDLGLPLIVKPSREGSSVGM--SKVSEPCEFDPALVEALRHDDEILIEKW 178

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T   +GD       I +  + FY YE+KY S  + +  P+ +  +  + +  L 
Sbjct: 179 LSGPEYTVAFIGDEIFPSIRIQMADA-FYDYEVKYLSDKAEYFCPSGLSDEQEQALVALV 237

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A++A+GC G  R D + D  S +   LE N  PG    S+ P  A  AG SF  L++ 
Sbjct: 238 RRAYKALGCSGWGRVDVIQD-TSGEFCLLEANTAPGSH--SLTPMAACQAGMSFSPLVVR 294

Query: 292 MVE 294
           ++E
Sbjct: 295 ILE 297


>gi|218961626|ref|YP_001741401.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)
           (D-Ala-D-Ala ligase) [Candidatus Cloacamonas
           acidaminovorans]
 gi|167730283|emb|CAO81195.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)
           (D-Ala-D-Ala ligase) [Candidatus Cloacamonas
           acidaminovorans]
          Length = 314

 Score =  156 bits (394), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 109/304 (35%), Positives = 161/304 (52%), Gaps = 20/304 (6%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL-----VLAHLKPDLAF 55
           + VL GG S EREVSL SG   ASAL + G+ V +ID      L      + + +P L F
Sbjct: 4   IVVLKGGTSPEREVSLVSGAEIASALRNMGYIVQEIDPADYPKLSDLLTAVQNEQPLLVF 63

Query: 56  NVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR 115
           N LHG  GE+G +QA L L  I +T SG  AS  SMDK  SK +  + G+PV   IL+  
Sbjct: 64  NGLHGGSGENGELQAALSLAGIKFTGSGFKASCFSMDKYISKLIALAEGIPVPKYILMRE 123

Query: 116 FTMDSQHLISP----------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
             ++    +            P ++KP   GSS+GI  ++  + +   + ++  ++H   
Sbjct: 124 DLLEDYQDVEDYSGFSNQLGLPIIVKPNDAGSSVGISRVECLEDLKPAVQKALQYSH--S 181

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
           +L+E+Y+ G ELT  ++   +  V EI  P   +Y Y  KY+   + +  PA+I   + K
Sbjct: 182 VLLEEYIPGRELTVTIIDSEAYPVVEIK-PLEGWYDYTNKYTHGKTKYEAPAQIDDTVAK 240

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285
            +Q  A    +A G  G +R DF +D L  K ++LE+N  PGMT +S+ P  A  AG SF
Sbjct: 241 LLQLYALRLWKAFGLSGYARIDFRYDGL--KPYFLEVNTLPGMTSLSLTPMAAKAAGMSF 298

Query: 286 RELL 289
           +ELL
Sbjct: 299 QELL 302


>gi|241667465|ref|ZP_04755043.1| D-alanine--D-alanine ligase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254876012|ref|ZP_05248722.1| D-alanine-D-alanine ligase B [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254842033|gb|EET20447.1| D-alanine-D-alanine ligase B [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
          Length = 297

 Score =  156 bits (394), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 107/300 (35%), Positives = 162/300 (54%), Gaps = 10/300 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59
           + VL GG S EREVSL SGKA   +L + G+    +D   + + + L  L PD  F  LH
Sbjct: 6   IVVLYGGDSPEREVSLKSGKAVLDSLLNQGYDAVGLDASSKDLVVKLLELNPDKCFIALH 65

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV-CPSILVNRFTM 118
           G  GE+G V A+LELL I +T S + +  ++MDKM SK+++    +P      L +R   
Sbjct: 66  GEDGENGRVAALLELLGIKHTGSTMKSCVVTMDKMISKEILMHHRMPTPMAKFLTDRLVE 125

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
             +  IS P  +KP  GGSS+    +K  + +     Q+S   HG +++IEQ+V G E+T
Sbjct: 126 ADE--ISFPVAVKPSSGGSSIATFKVKSFEELENAYQQAS--KHG-EVMIEQWVTGKEIT 180

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             ++ +       I  P ++FY YE KYS  +  H  P+ +      EV++LA  A+  +
Sbjct: 181 VAIVNNDVYSSVWIE-PLNEFYDYESKYSGKSIYHA-PSGLCEQKELEVRQLAKKAYDLL 238

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           GC+G +R DF++D      + +EIN  PGMT  S+ P+ AA  G  F   +  ++E A C
Sbjct: 239 GCKGHARVDFIYDD-KGDFYIMEINSSPGMTENSLSPKSAAAEGIDFDSFVKSILEQAQC 297


>gi|330465894|ref|YP_004403637.1| D-alanine/D-alanine ligase [Verrucosispora maris AB-18-032]
 gi|328808865|gb|AEB43037.1| D-alanine/D-alanine ligase [Verrucosispora maris AB-18-032]
          Length = 388

 Score =  156 bits (394), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 106/353 (30%), Positives = 175/353 (49%), Gaps = 62/353 (17%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------AHL---- 49
           + VL GG S+E EVS +S    A AL   G++V  + V R   L L       AH+    
Sbjct: 20  IGVLFGGPSAEHEVSCASALGVARALVGGGYQVVALGVTRQGRLRLVPEETLAAHIDGTA 79

Query: 50  ----------------------KP------------------DLAFNVLHGNFGEDGLVQ 69
                                 +P                  D+ F VLHG +GEDG+VQ
Sbjct: 80  AARAIDDRLSVTGSAVELRAGERPGTALVTGAESPGEVHAVLDVVFPVLHGPYGEDGVVQ 139

Query: 70  AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN----RFTMDSQHLI- 124
            +LE L +PY   GILASA+ MDK+  K+ + + GVP+ P +  +    R T D + L+ 
Sbjct: 140 GLLESLGVPYVGCGILASAVGMDKVAMKRALRAEGVPITPHVWFDEHTYRTTEDVEKLVV 199

Query: 125 --SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
               P  +KP + GSS+GI  + +D  +   +    +  H + +++EQ V G EL CGV+
Sbjct: 200 GLRRPLFVKPARMGSSIGISRVTEDDDLAAAV--EEALRHDNLVVVEQGVTGRELECGVL 257

Query: 183 GDASLDVTEIAVPK--SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           G    + + +   +    ++ Y+ KY       V+PA +P ++ + ++ L+  A  AIG 
Sbjct: 258 GGTRPEASTVGEVRVTGGWFDYQQKYFGDADPMVVPAVLPDEVTERIRDLSLRAFAAIGG 317

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            G++R DFL+D  + +++  E+N  PG T  S++P++ A AG  +++++  +V
Sbjct: 318 WGLARVDFLYDESAGELYVNELNTMPGFTAHSMYPKVWAAAGVGYQQIVDRLV 370


>gi|315186147|gb|EFU19909.1| D-alanine/D-alanine ligase [Spirochaeta thermophila DSM 6578]
          Length = 364

 Score =  155 bits (393), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 107/339 (31%), Positives = 166/339 (48%), Gaps = 48/339 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKV---------------------SQIDVD 39
           +A+L GG S E EVS  S  A    L+   F+V                       ++V 
Sbjct: 9   IALLYGGRSGEHEVSCRSAAAIYEHLDRERFEVLPVGITHEGRWYLQREVRVKDGALEVT 68

Query: 40  RSVGLVL------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87
              G V+              L+ D  F ++HG FGEDG +Q +LE   + Y  +G+L S
Sbjct: 69  EDEGAVVWAVPGAGLWCGGEDLRVDCVFPIVHGTFGEDGTLQGLLEQAGVAYVGAGVLGS 128

Query: 88  ALSMDKMRSKQVVSSCGVPVCPSILV--------NRFTMDSQHLISPPYVIKPLKGGSSL 139
           AL MDK R+K V    G+P+ P ++V        N   +  +  +  P  +KP +GGSS+
Sbjct: 129 ALGMDKDRAKAVWLQAGLPILPFMVVRRESLPPWNELAIQLRRRMEFPVFVKPARGGSSV 188

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA---SLDVTEIAVPK 196
           GI  +  ++   L      ++ +  +++IEQ ++  E+ CGV G+    S    EI +  
Sbjct: 189 GISKVHDERG--LKKACELAFTYDSKIVIEQGIEAREIECGVWGNEDVRSFPPGEI-IHT 245

Query: 197 SDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255
            +FY YE KY       + +PA++  +  + V+ +A  A++A+ C G +R DFL D  + 
Sbjct: 246 HEFYDYEAKYEDTEGLQLKIPAELTPEQQEYVRNVAEKAYRALECEGFARVDFLLDTETE 305

Query: 256 KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             +  EIN  PG TPVS+FP MA  AG SF +LL  ++E
Sbjct: 306 VFYLNEINTLPGFTPVSMFPLMAQAAGISFPDLLTRLIE 344


>gi|291294737|ref|YP_003506135.1| D-alanine/D-alanine ligase [Meiothermus ruber DSM 1279]
 gi|290469696|gb|ADD27115.1| D-alanine/D-alanine ligase [Meiothermus ruber DSM 1279]
          Length = 322

 Score =  155 bits (393), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 102/312 (32%), Positives = 166/312 (53%), Gaps = 29/312 (9%)

Query: 3   VLMGGISSEREVSLSSGKACASAL----------EDAGFKVSQIDVDR-SVGLVLAHLKP 51
           +L GG   E EVSLSS +   +A+          +D  + + +   +    G+      P
Sbjct: 5   LLAGGPPGEHEVSLSSARGVLAAMPHPTELVVIAKDGRWLLGEDAYEALRAGVAEQGTHP 64

Query: 52  ----------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
                     D+ F +LHG  GEDG++Q  L+LL  PY  +G+ +SAL MDK   K+V+ 
Sbjct: 65  FPPPVPWQHYDVVFPLLHGPLGEDGVIQGFLQLLRRPYVGAGVASSALCMDKDLCKRVLR 124

Query: 102 SCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN 161
             G+PV P + + +     Q    PPY +KP   GSS+GI  +K DQ     L ++ +W+
Sbjct: 125 QAGIPVVPWVTLYKGEPTPQPPFPPPYFVKPANTGSSVGISKVKADQDATRALAEAFAWD 184

Query: 162 HGDQLLIEQYVDGI-ELTCGVMGDASLD---VTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
             D++L+EQ ++G+ EL   ++G+   +   V EI   +S+FY YE KY+   +   LPA
Sbjct: 185 --DKVLVEQGIEGVRELEVALLGNIHAEASVVGEITY-QSEFYDYETKYTEGKAQLHLPA 241

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
            IP ++  E++  A  A++ +G RG++R DF   P   +++  E N  PG TP S++P++
Sbjct: 242 PIPPELSDEIRATALEAYRILGVRGMARVDFFLSPQG-ELYLNEFNTIPGFTPTSMYPKL 300

Query: 278 AAYAGYSFRELL 289
               G ++ +LL
Sbjct: 301 WQATGLAYPDLL 312


>gi|167626884|ref|YP_001677384.1| D-alanyl-alanine synthetase A [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|190359131|sp|B0TVX5|DDL_FRAP2 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|167596885|gb|ABZ86883.1| D-alanine--D-alanine ligase [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
          Length = 297

 Score =  155 bits (393), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 107/300 (35%), Positives = 162/300 (54%), Gaps = 10/300 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59
           + VL GG S EREVSL SGKA   +L + G+    +D   + + + L  L PD  F  LH
Sbjct: 6   IVVLYGGDSPEREVSLKSGKAVLDSLLNQGYDAVGLDASSKDLVVKLLELNPDKCFIALH 65

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV-CPSILVNRFTM 118
           G  GE+G V A+LELL I +T S + +  ++MDKM SK+++    +P      L +R   
Sbjct: 66  GEDGENGRVAALLELLGIKHTGSTMKSCVVTMDKMISKEILMHHRMPTPMAKFLTDRLVE 125

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
             +  IS P  +KP  GGSS+    +K  + +     Q+S   HG +++IEQ+V G E+T
Sbjct: 126 ADE--ISFPVAVKPSSGGSSIATFKVKSLEELENAYQQAS--KHG-EVMIEQWVTGKEIT 180

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             ++ +       I  P ++FY YE KYS  +  H  P+ +      EV++LA  A+  +
Sbjct: 181 VAIVNNDVYSSVWIE-PLNEFYDYESKYSGKSIYHA-PSGLCEQKELEVRQLAKKAYDLL 238

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           GC+G +R DF++D      + +EIN  PGMT  S+ P+ AA  G  F   +  ++E A C
Sbjct: 239 GCKGHARVDFIYDD-KGDFYIMEINSSPGMTENSLSPKSAAAEGIDFDSFVKSILEQAQC 297


>gi|251799340|ref|YP_003014071.1| D-alanine--D-alanine ligase [Paenibacillus sp. JDR-2]
 gi|247546966|gb|ACT03985.1| D-alanine/D-alanine ligase [Paenibacillus sp. JDR-2]
          Length = 303

 Score =  155 bits (393), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 97/298 (32%), Positives = 161/298 (54%), Gaps = 11/298 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGGISSERE+SL +G+   + L+   ++V  I+++    L+      D A   LHG
Sbjct: 4   IGVIMGGISSEREISLLTGQEMIANLDRGKYEVVPIEINTKRDLIDKTAGIDFALLALHG 63

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFT 117
            +GEDG VQ  LE L IPY+  G+L+S++SMDK  +K+++   G+     I V       
Sbjct: 64  KYGEDGTVQGTLESLGIPYSGCGVLSSSVSMDKELAKKLIRFDGILTADWINVASMEELA 123

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
             +   +  P V+KP  GGSS+   ++K    +   + ++  W+  D ++IEQ+V G E+
Sbjct: 124 AANVERLGLPVVVKPNSGGSSIATRLVKTQDEVAEAVAEALKWD--DSVMIEQFVGGEEI 181

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC V+    L +  I    S+F+ ++ KY    +T  +  ++P D+   V+  A   ++A
Sbjct: 182 TCAVLSGKLLPIVSIKA-NSEFFDFDSKYQDGGATEEV-IELPADVQARVEASALGCYKA 239

Query: 238 IGCRGISRSDFLF-DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           + C   SR D +  D +    + LE N  PG+T  S+ P+ A  AG  F ELL ++++
Sbjct: 240 LKCSVYSRIDMIIKDGVP---YVLEANTLPGLTKNSLLPKAAKAAGIKFNELLDYIID 294


>gi|28871324|ref|NP_793943.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|39931110|sp|Q87XJ6|DDLA_PSESM RecName: Full=D-alanine--D-alanine ligase A; AltName:
           Full=D-Ala-D-Ala ligase A; AltName: Full=D-alanylalanine
           synthetase A
 gi|28854575|gb|AAO57638.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|331015641|gb|EGH95697.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. lachrymans
           str. M302278PT]
          Length = 363

 Score =  155 bits (393), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 103/344 (29%), Positives = 177/344 (51%), Gaps = 55/344 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------------------- 40
           +A++ GG SSE EVSL S +   +A++   + ++ I VD+                    
Sbjct: 5   VAIVFGGQSSEHEVSLQSARNVINAIDRESYALTLIGVDKLGRWLRFDEADYLLNANDPA 64

Query: 41  ----------------SVGLVLAHL---KP----DLAFNVLHGNFGEDGLVQAILELLEI 77
                           SVG     +   KP    D+ F ++HG FGEDG +Q +L +L +
Sbjct: 65  RIKLSGSGKQLSLLPGSVGGQFVEVESGKPLAAIDVVFPLIHGAFGEDGALQGLLRMLAV 124

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR-----FTMDSQHLISPPYVIKP 132
           P+  + +LASA  MDK  +K+++   G+ V P +++NR     F   +  L S P  +KP
Sbjct: 125 PFVGADVLASAACMDKDVTKRLLRDAGIAVAPFMVLNRGESLSFAQAAAQL-SLPMFVKP 183

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD--ASLDVT 190
              GSS+G+  +  +      L     ++H  +LLIEQ + G E+ C V+G+  A + V 
Sbjct: 184 ANQGSSVGVSKVSDEAGFAAALALGFEFDH--KLLIEQGIVGREVECAVLGNDEAQVSVC 241

Query: 191 EIAVPKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
              V   +FY+Y+ KY + +   + +PA++P D+  +V+ +A  A++ +GC G+SR DF 
Sbjct: 242 GEVVANDEFYAYDTKYLNGDQARIAIPAELPADLSDQVRDVALQAYKVLGCAGLSRVDF- 300

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           F   +R++   E+N  PG T +S++P++    G S+ EL+  ++
Sbjct: 301 FVTEAREIIINEVNTLPGFTSISMYPKLWQATGLSYAELIHRLI 344


>gi|317486231|ref|ZP_07945065.1| D-alanine-D-alanine ligase [Bilophila wadsworthia 3_1_6]
 gi|316922530|gb|EFV43782.1| D-alanine-D-alanine ligase [Bilophila wadsworthia 3_1_6]
          Length = 299

 Score =  155 bits (392), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 102/301 (33%), Positives = 163/301 (54%), Gaps = 20/301 (6%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVS----QIDVDRSVGLVLAHLKPDLAFNVL 58
           +L GG S EREVSL  G+  A+AL++ G  V+      D +R + +   H   D AF  L
Sbjct: 5   LLAGGWSPEREVSLKGGEQIAAALKERGHSVTLCDPAKDFERLMDMAREH---DAAFINL 61

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--- 115
           HG  GEDGLVQAIL+ +  PY  +G   S L++ K  ++Q+    G+ +   + + R   
Sbjct: 62  HGAPGEDGLVQAILDRVNCPYQGAGPAGSFLALHKAAARQIFRDAGLNIPDGVFLPRHPG 121

Query: 116 --FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
             +  D Q+    P  +K   GGSSL +  +  ++ +   L  +S ++ G++ ++E  V 
Sbjct: 122 PNWKPDLQY----PMFVKSNTGGSSLHLSRVTNEEELYTAL--NSLFSMGEEAIVETAVV 175

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           G E+TCGV+G+ +L    + V K +++ Y  KY+   +  + PA I  +   +VQ  A  
Sbjct: 176 GREVTCGVLGEEAL-APILVVSKGNYFDYHNKYAPDGAQEICPAPIAPEETAKVQDAALR 234

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           AH A+G +G SR+DF+       ++ LE+N  PGMT  S+ P  AA  G SF +L+  ++
Sbjct: 235 AHHALGLKGYSRADFILQD-DGTLYILEVNTTPGMTSTSLVPREAAVKGMSFADLVERLL 293

Query: 294 E 294
           E
Sbjct: 294 E 294


>gi|15643029|ref|NP_228072.1| D-alanyl-alanine synthetase A [Thermotoga maritima MSB8]
 gi|170288487|ref|YP_001738725.1| D-alanine--D-alanine ligase [Thermotoga sp. RQ2]
 gi|6226593|sp|P46805|DDL_THEMA RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|190359217|sp|B1L9P4|DDL_THESQ RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|4980755|gb|AAD35347.1|AE001708_15 D-alanine--D-alanine ligase [Thermotoga maritima MSB8]
 gi|170175990|gb|ACB09042.1| D-alanine--D-alanine ligase [Thermotoga sp. RQ2]
          Length = 303

 Score =  155 bits (392), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 106/303 (34%), Positives = 162/303 (53%), Gaps = 17/303 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP-DLAFNVLH 59
           +A+LMGG+S ERE+SL SG+    ALE  G++ +  DV       +  LK  D+ FNVLH
Sbjct: 3   VALLMGGVSREREISLRSGERVKKALEKLGYEHTVFDVREDFLKKVDQLKSFDVVFNVLH 62

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G FGEDG +QAIL+ L I YT S   +S +  DK+ + + +    V +   + +  F   
Sbjct: 63  GTFGEDGTLQAILDFLGIRYTGSDAFSSMICFDKLVTYRFLKGT-VEIPDFVEIKEFMKT 121

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
           S   +  P V+KP + GSS+G+ V + D+      L+     +G  +++++Y+ G E+T 
Sbjct: 122 SP--LGYPCVVKPRREGSSIGVFVCESDEEFQ-HALKEDLPRYG-SVIVQKYIPGREMTV 177

Query: 180 GVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE--VQRLAFL 233
            ++    G   L V E+  PK  FY Y  KY+   +  +LPA  PL+  +E  V+ +A  
Sbjct: 178 SILETEKGFEILPVLELR-PKRRFYDYVAKYTKGETEFILPA--PLNPSEERLVKEMALK 234

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           A    GCRG  R D +F     + ++LEIN  PG+T  S  P  A   G  F EL+  ++
Sbjct: 235 AFVEAGCRGFGRVDGIFS--DGRFYFLEINTVPGLTETSDLPASAKAGGIEFEELVEIIL 292

Query: 294 EDA 296
           + A
Sbjct: 293 KSA 295


>gi|312792764|ref|YP_004025687.1| d-alanine/d-alanine ligase [Caldicellulosiruptor kristjanssonii
           177R1B]
 gi|312876811|ref|ZP_07736789.1| D-alanine/D-alanine ligase [Caldicellulosiruptor lactoaceticus 6A]
 gi|311796430|gb|EFR12781.1| D-alanine/D-alanine ligase [Caldicellulosiruptor lactoaceticus 6A]
 gi|312179904|gb|ADQ40074.1| D-alanine/D-alanine ligase [Caldicellulosiruptor kristjanssonii
           177R1B]
          Length = 364

 Score =  155 bits (392), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 100/338 (29%), Positives = 175/338 (51%), Gaps = 51/338 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKAC-------------------------ASALEDAGFKVSQ 35
           +AVL GG+S+E E+S+ S K+                             +ED   K +Q
Sbjct: 6   VAVLFGGVSTEHEISIVSAKSIMQNMDKEKYEIIPIGITKEGKWLLYTGKIEDLDNKWTQ 65

Query: 36  IDV------DRSVGLVL-------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
             +      DR+   ++         +  D+ F VLHG  GEDG VQ +LEL  IPY   
Sbjct: 66  FSIECFISPDRTKKALVKIKDNEATFIDIDVVFPVLHGLNGEDGTVQGLLELSNIPYVGC 125

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTMDSQHLI-------SPPYVIKPL 133
           G+L+SA+ MDK  +K++    G+P    ++V  N ++    + I       S P  +KP 
Sbjct: 126 GVLSSAICMDKAFAKKLALLEGIPQGHFLVVYKNEYSAKKDYFIRRIESEFSYPVFVKPA 185

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
             GSS+GI   K  + + L + ++  + +  ++LIEQ ++  E+ C V+G+  + V+E  
Sbjct: 186 NSGSSVGISKAKDREDLVLAIHEA--FLYDTKILIEQAINAREIECAVLGNDEVFVSEPG 243

Query: 194 --VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
             +P  +FYSYE KY   +S  ++PA++P ++ +E++ LA   ++   C G++R DF  D
Sbjct: 244 EIIPSREFYSYEAKYIDNSSELIIPARLPKEVVEEIKDLAARIYKIFECCGMARVDFFVD 303

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
             + KV++ E+N  PG T +S++P++  ++   + +L+
Sbjct: 304 KDTNKVYFNEVNTIPGFTSISMYPKLMEFSSIPYSQLI 341


>gi|325518026|gb|EGC97834.1| D-alanine--D-alanine ligase [Burkholderia sp. TJI49]
          Length = 313

 Score =  155 bits (392), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 101/297 (34%), Positives = 161/297 (54%), Gaps = 11/297 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL+SG+     L DAG      D        L     + AF  LHG
Sbjct: 12  VAVLFGGESAEREVSLTSGRLVLQGLRDAGIDAHPFDPAERPLAALKDEGFERAFIALHG 71

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---FT 117
            +GE+G +Q  L+   I YT SG+L SAL +DK R+K V    GVP  P   V R   + 
Sbjct: 72  GYGENGQIQGALDFYGIRYTGSGVLGSALGLDKFRTKLVWQQTGVPTPPFETVLRGDDYA 131

Query: 118 MDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD- 173
             +  +++    P  +KP   GSS+ ++ +K   ++P  L ++++  H   +++E+ ++ 
Sbjct: 132 ARATEIVAKLGLPLFVKPASEGSSVAVLKVKTADALPAALAEAAT--HDRIVIVEKSIEG 189

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           G E T  + GD  L + +I VP  +FY Y  KY + ++ +++P  +P     E++R+A  
Sbjct: 190 GGEYTACIAGDLDLPLIKI-VPAGEFYDYHAKYVADDTQYLIPCGLPAVQEAELKRIARR 248

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A   +GC    R+DF+ D  +   ++LE+N  PGMT  S+ P+ A   G S+ EL++
Sbjct: 249 AFDVLGCTDWGRADFMLDA-AGNAYFLEVNTAPGMTDHSLPPKAARSVGISYSELVV 304


>gi|291540930|emb|CBL14041.1| D-alanine--D-alanine ligase [Roseburia intestinalis XB6B4]
          Length = 351

 Score =  155 bits (392), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 109/345 (31%), Positives = 168/345 (48%), Gaps = 55/345 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------------DRSVGLV 45
           + VL GG+S+ER+VS  +G   A AL + G +V  +DV               DRS  + 
Sbjct: 3   IVVLAGGLSTERDVSFKTGDMVAKALRENGHQVILLDVFMGYSDKKEDLTGIFDRSEEVS 62

Query: 46  LA-----HLKPDLA----------------------------FNVLHGNFGEDGLVQAIL 72
           +       + PDLA                            F  LHG  GE+G +QA  
Sbjct: 63  VKVSGIPEIAPDLAKVKASRKDQSDNFFGPNVIELCQMSDIVFMALHGENGENGKIQAAF 122

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--FTMDSQHL-ISPPYV 129
           +L  I YT +G L+SAL+MDK  SK++  S G+P      + +   + D   L I  P V
Sbjct: 123 DLFGIRYTGTGYLSSALAMDKEMSKKLFLSAGIPAPKGASMKKADCSDDITKLGIQFPCV 182

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           +KP  GGSS+G+ +    +     L ++  W   + L++E+YV G E + GV+   +L +
Sbjct: 183 VKPCCGGSSIGVSIAHNAEEYKAALDEAFRWE--ENLIVEEYVKGREFSVGVIEGKALPI 240

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
            EIA P   FY Y+ KY + ++    PA++   + +++Q  A    Q +G    SR+DFL
Sbjct: 241 IEIA-PVQGFYDYKNKYKAGSAVETCPAELSEAVTEKMQHYAEQVAQVLGLDTYSRTDFL 299

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            D  +  ++ LE N  PGMTP S+ P+ A   G +F EL   +++
Sbjct: 300 LDE-NENIYCLEANTLPGMTPTSLLPQEAQVVGVNFNELCEKLIQ 343


>gi|254480088|ref|ZP_05093336.1| putative D-ala D-ala ligase N-terminal domain protein [marine gamma
           proteobacterium HTCC2148]
 gi|214039650|gb|EEB80309.1| putative D-ala D-ala ligase N-terminal domain protein [marine gamma
           proteobacterium HTCC2148]
          Length = 307

 Score =  155 bits (391), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 104/285 (36%), Positives = 160/285 (56%), Gaps = 10/285 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP-DLAFNVLH 59
           +AVL+GG S+ER+VSL SG+  + AL   G   S  DVD +    +A L+  D AFN LH
Sbjct: 11  IAVLLGGTSAERDVSLLSGRTVSDALR--GLDYSVRDVDPADADWVAQLQGVDYAFNALH 68

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G  GEDG +Q  LE L I YT SG+L SAL+MDK RSKQ+    G+      +++  T D
Sbjct: 69  GPGGEDGTIQGALEALGIRYTGSGVLGSALAMDKRRSKQLWQGIGIATGGFEMLDADT-D 127

Query: 120 SQHLIS--PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            Q +I       +KP   GSS+G+      +S+      +++++ G  ++ E++++G E 
Sbjct: 128 WQAVIDRLGKVFVKPACEGSSIGMAPASDAESLRTAYEGAAAYSGG--VMAEKFINGPEY 185

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           T  ++GD +L    + V +++FY Y+ KY S ++++  P+ +      +V  +A  A ++
Sbjct: 186 TVAILGDEALPSIRM-VTENEFYDYDAKYLSDDTSYHCPSGLNASEEAQVGAMALAAFRS 244

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAG 282
           +GC G  R D + D   R  F LE+N  PGMT  S+ P  A  AG
Sbjct: 245 LGCAGWGRVDTMRDSDGR-FFVLEVNTIPGMTSHSLVPMAARQAG 288


>gi|218768808|ref|YP_002343320.1| D-alanine--D-alanine ligase [Neisseria meningitidis Z2491]
 gi|22095566|sp|Q9JSZ9|DDL_NEIMA RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|121052816|emb|CAM09163.1| D-alanine--D-alanine ligase B [Neisseria meningitidis Z2491]
 gi|319411047|emb|CBY91447.1| D-alanine-D-alanine ligase (D-alanylalanine synthetase; D-Ala-D-Ala
           ligase) [Neisseria meningitidis WUE 2594]
          Length = 304

 Score =  155 bits (391), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 109/302 (36%), Positives = 162/302 (53%), Gaps = 13/302 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD---LAFNV 57
           +AVLMGG SSERE+SL SG A  +AL+  G      D   +    L+ LK      AFN+
Sbjct: 7   VAVLMGGFSSEREISLDSGTAILNALKSKGIDAYAFDPKETP---LSELKAQGFQTAFNI 63

Query: 58  LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-SILVNRF 116
           LHG +GEDG VQ  LELL IPYT SG+ ASA+ MDK R K +  + G+PV   ++L +  
Sbjct: 64  LHGTYGEDGAVQGALELLGIPYTGSGVAASAIGMDKYRCKLIWQALGLPVPEFAVLHDDT 123

Query: 117 TMDS-QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175
             D+ +  +  P  +KP        + V+K      L  +     +   +++ E+++ G 
Sbjct: 124 DFDAVEEKLGLPMFVKP--AAEGSSVGVVKVKGKGRLKSVYEELKHFQGEIIAERFIGGG 181

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR-LAFLA 234
           E +C V+    L    I +P ++FY YE KY+  ++ +  P++   +  + + R LA   
Sbjct: 182 EYSCPVLNGKGLPGIHI-IPATEFYDYEAKYNRNDTIYQCPSEDLTEAEESLMRELAVRG 240

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            QAIG  G  R DFL D    K++ LEIN  PGMT  S+ P+ AA  G  F +L + +++
Sbjct: 241 AQAIGAEGCVRVDFLKD-TDGKLYLLEINTLPGMTGHSLVPKSAAVMGVGFADLCIEILK 299

Query: 295 DA 296
            A
Sbjct: 300 TA 301


>gi|304386681|ref|ZP_07368962.1| D-alanine-D-alanine ligase B [Neisseria meningitidis ATCC 13091]
 gi|304339234|gb|EFM05313.1| D-alanine-D-alanine ligase B [Neisseria meningitidis ATCC 13091]
          Length = 343

 Score =  155 bits (391), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 109/302 (36%), Positives = 162/302 (53%), Gaps = 13/302 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD---LAFNV 57
           +AVLMGG SSERE+SL SG A  +AL+  G      D   +    L+ LK      AFN+
Sbjct: 46  VAVLMGGFSSEREISLDSGTAILNALKSKGIDAYAFDPKETP---LSELKAQGFQTAFNI 102

Query: 58  LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-SILVNRF 116
           LHG +GEDG VQ  LELL IPYT SG+ ASA+ MDK R K +  + G+PV   ++L +  
Sbjct: 103 LHGTYGEDGAVQGALELLGIPYTGSGVAASAIGMDKYRCKLIWQALGLPVPEFAVLHDDT 162

Query: 117 TMDS-QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175
             D+ +  +  P  +KP        + V+K      L  +     +   +++ E+++ G 
Sbjct: 163 DFDAVEEKLGLPMFVKP--AAEGSSVGVVKVKGKGRLKSVYEELKHLQGEIIAERFIGGG 220

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR-LAFLA 234
           E +C V+    L    I +P ++FY YE KY+  ++ +  P++   +  + + R LA   
Sbjct: 221 EYSCPVLNGKGLPGIHI-IPATEFYDYEAKYNRDDTIYQCPSEDLTEAEESLMRELAVRG 279

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            QAIG  G  R DFL D    K++ LEIN  PGMT  S+ P+ AA  G  F +L + +++
Sbjct: 280 AQAIGAEGCVRVDFLKD-TDGKLYLLEINTLPGMTSHSLVPKSAAVTGVGFADLCIEILK 338

Query: 295 DA 296
            A
Sbjct: 339 TA 340


>gi|258405198|ref|YP_003197940.1| D-alanine/D-alanine ligase [Desulfohalobium retbaense DSM 5692]
 gi|257797425|gb|ACV68362.1| D-alanine/D-alanine ligase [Desulfohalobium retbaense DSM 5692]
          Length = 302

 Score =  155 bits (391), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 101/295 (34%), Positives = 157/295 (53%), Gaps = 7/295 (2%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVG-LVLAHLKPDLAFNVLHGN 61
           ++ GG S+ER+VS+S GKA A+AL   G +V   D  +    L     + D  F  LHG 
Sbjct: 5   LIAGGWSNERDVSISGGKAIAAALRANGHEVHWFDPAQEFAELPTKARQSDFVFINLHGA 64

Query: 62  FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS- 120
            GEDGL+QA+L+ L  PY  SG   S L++DK  +K + +  G+      LV     ++ 
Sbjct: 65  PGEDGLIQAMLDRLGCPYQGSGPAGSLLALDKTATKTLYAQAGLATPAWELVTSCREENW 124

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           Q  +  P  IKP +GGSSLG+  +   + +   L Q   ++    +L+E+ V G E+TC 
Sbjct: 125 QPALRFPLFIKPNQGGSSLGVQRVYSQKELHPQLSQQLQFSSA--VLLEEAVTGKEVTCA 182

Query: 181 VMGDASLDVTEIAV-PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
           V+G+ +L +  I    ++ F+ Y  KY+   +  + PA +   +   +Q+ A  AH+ +G
Sbjct: 183 VVGEQALPLVLIEPGDEAAFFDYHSKYTPEAAREICPAPLSETLTAAIQKAALEAHRILG 242

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             G SR+DF+    +   F LE N  PGMTP S+ P+ AA  G  F  LL  +++
Sbjct: 243 LTGYSRTDFIL--ANGTAFALETNTLPGMTPTSLLPQAAAARGQDFNGLLEELIQ 295


>gi|15676336|ref|NP_273472.1| D-alanine--D-alanine ligase [Neisseria meningitidis MC58]
 gi|254805544|ref|YP_003083765.1| D-alanine--D-alanine ligase [Neisseria meningitidis alpha14]
 gi|22095567|sp|Q9K0Y0|DDL_NEIMB RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|7225647|gb|AAF40862.1| D-alanine--D-alanine ligase [Neisseria meningitidis MC58]
 gi|254669086|emb|CBA07635.1| D-alanine--D-alanine ligase [Neisseria meningitidis alpha14]
 gi|254673373|emb|CBA08642.1| D-alanine--D-alanine ligase B [Neisseria meningitidis alpha275]
 gi|261391938|emb|CAX49400.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase;
           D-Ala-D-Ala ligase) [Neisseria meningitidis 8013]
 gi|316984934|gb|EFV63890.1| D-alanine--D-alanine ligase B [Neisseria meningitidis H44/76]
 gi|325136991|gb|EGC59588.1| D-alanine--D-alanine ligase B [Neisseria meningitidis M0579]
 gi|325140939|gb|EGC63446.1| D-alanine--D-alanine ligase B [Neisseria meningitidis CU385]
 gi|325142978|gb|EGC65335.1| D-alanine--D-alanine ligase B [Neisseria meningitidis 961-5945]
 gi|325144963|gb|EGC67246.1| D-alanine--D-alanine ligase B [Neisseria meningitidis M01-240013]
 gi|325198893|gb|ADY94349.1| D-alanine--D-alanine ligase B [Neisseria meningitidis G2136]
 gi|325199612|gb|ADY95067.1| D-alanine--D-alanine ligase B [Neisseria meningitidis H44/76]
 gi|325202765|gb|ADY98219.1| D-alanine--D-alanine ligase B [Neisseria meningitidis M01-240149]
 gi|325205493|gb|ADZ00946.1| D-alanine--D-alanine ligase B [Neisseria meningitidis M04-240196]
 gi|325208761|gb|ADZ04213.1| D-alanine--D-alanine ligase B [Neisseria meningitidis NZ-05/33]
          Length = 304

 Score =  155 bits (391), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 109/302 (36%), Positives = 162/302 (53%), Gaps = 13/302 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD---LAFNV 57
           +AVLMGG SSERE+SL SG A  +AL+  G      D   +    L+ LK      AFN+
Sbjct: 7   VAVLMGGFSSEREISLDSGTAILNALKSKGIDAYAFDPKETP---LSELKAQGFQTAFNI 63

Query: 58  LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-SILVNRF 116
           LHG +GEDG VQ  LELL IPYT SG+ ASA+ MDK R K +  + G+PV   ++L +  
Sbjct: 64  LHGTYGEDGAVQGALELLGIPYTGSGVAASAIGMDKYRCKLIWQALGLPVPEFAVLHDDT 123

Query: 117 TMDS-QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175
             D+ +  +  P  +KP        + V+K      L  +     +   +++ E+++ G 
Sbjct: 124 DFDAVEEKLGLPMFVKP--AAEGSSVGVVKVKGKGRLKSVYEELKHLQGEIIAERFIGGG 181

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR-LAFLA 234
           E +C V+    L    I +P ++FY YE KY+  ++ +  P++   +  + + R LA   
Sbjct: 182 EYSCPVLNGKGLPGIHI-IPATEFYDYEAKYNRDDTIYQCPSEDLTEAEESLMRELAVRG 240

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            QAIG  G  R DFL D    K++ LEIN  PGMT  S+ P+ AA  G  F +L + +++
Sbjct: 241 AQAIGAEGCVRVDFLKD-TDGKLYLLEINTLPGMTSHSLVPKSAAVTGVGFADLCIEILK 299

Query: 295 DA 296
            A
Sbjct: 300 TA 301


>gi|312621719|ref|YP_004023332.1| d-alanine/d-alanine ligase [Caldicellulosiruptor kronotskyensis
           2002]
 gi|312202186|gb|ADQ45513.1| D-alanine/D-alanine ligase [Caldicellulosiruptor kronotskyensis
           2002]
          Length = 364

 Score =  155 bits (391), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 101/338 (29%), Positives = 175/338 (51%), Gaps = 51/338 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKAC-------------------------ASALEDAGFKVSQ 35
           +AVL GG+S+E E+S+ S K+                             +ED   K +Q
Sbjct: 6   VAVLFGGVSTEHEISIVSAKSIMQNMDKEKYEIIPIGITKEGKWLLYTGKIEDLDSKWTQ 65

Query: 36  IDV------DRSVGLVL-------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
             +      DR+   ++         +  D+ F VLHG  GEDG VQ +LEL  IPY   
Sbjct: 66  FSIECFISPDRTKKALVKIKDNEATFIDIDVVFPVLHGLNGEDGTVQGLLELSGIPYVGC 125

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTMDSQHLI-------SPPYVIKPL 133
           G+L+SA+ MDK  +K++    G+P    ++V  N ++    + I       S P  +KP 
Sbjct: 126 GVLSSAICMDKAFAKKLALLEGIPQGHFLVVYKNEYSAKKDYFIRRIESEFSYPVFVKPA 185

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
             GSS+GI   K  + + L + ++  + +  ++LIEQ ++  E+ C V+G+  + V+E  
Sbjct: 186 NSGSSVGISKAKDREDLVLAIHEA--FLYDTKILIEQAINAREIECAVLGNDEVFVSEPG 243

Query: 194 --VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
             +P  +FYSYE KY   +S  ++PA++P ++ +E++ LA   ++   C G++R DF  D
Sbjct: 244 EIIPSREFYSYEAKYIDNSSELIIPARLPKEVTEEIKDLAARIYKIFECCGMARVDFFVD 303

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
             + KV++ EIN  PG T +S++P++  ++   + +L+
Sbjct: 304 KDTNKVYFNEINTIPGFTSISMYPKLMEFSSIPYSQLI 341


>gi|167757234|ref|ZP_02429361.1| hypothetical protein CLORAM_02784 [Clostridium ramosum DSM 1402]
 gi|237735682|ref|ZP_04566163.1| conserved hypothetical protein [Mollicutes bacterium D7]
 gi|167703409|gb|EDS17988.1| hypothetical protein CLORAM_02784 [Clostridium ramosum DSM 1402]
 gi|229381427|gb|EEO31518.1| conserved hypothetical protein [Coprobacillus sp. D7]
          Length = 349

 Score =  154 bits (390), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 103/331 (31%), Positives = 162/331 (48%), Gaps = 45/331 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS------------------- 41
           +A+L GG SSE EVSL S  A         + +  I + R+                   
Sbjct: 6   IAILFGGKSSEYEVSLQSAAAIIKNFPQEKYDLYLIGITRAGQWFHYDGEIEKISNDTWN 65

Query: 42  ---VGLVLAHLKP------------------DLAFNVLHGNFGEDGLVQAILELLEIPYT 80
              +  V   L+P                  D    VLHG  GEDG VQ ++EL +IP  
Sbjct: 66  QELLNPVTVCLEPERQAVMEIVDNKIIYQQIDAVLPVLHGKNGEDGTVQGLMELAKIPVL 125

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLG 140
             G+LASAL MDK R+ Q+V + G+ V  S+LV+     +   ++ P  +KPLK GSS G
Sbjct: 126 GCGLLASALCMDKYRAHQLVKAAGIKVTRSVLVHNINDFNVKALNFPLFVKPLKAGSSYG 185

Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK--SD 198
           I  + K + +   L    ++N+ +++++E+ V+G E+ C ++G+  L V E+   +    
Sbjct: 186 ISKVVKMEELTKAL--EYAFNYDNEVIVEEAVEGFEVGCAIIGNDELTVGEVDEIELSGG 243

Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
           F+ Y+ KY+   ST  +PA+I     +++Q  A + +Q + C+  +R D    P +  VF
Sbjct: 244 FFDYDEKYTLKTSTIHMPARIDEVTARKIQETAKIIYQTLACQNFARVDMFLTPNNEIVF 303

Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
             E+N  PG T  S FP+M    G+ F EL+
Sbjct: 304 N-EVNTIPGFTDHSRFPQMMKGVGFEFSELI 333


>gi|254671165|emb|CBA08255.1| D-alanine--D-alanine ligase B [Neisseria meningitidis alpha153]
          Length = 304

 Score =  154 bits (390), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 109/302 (36%), Positives = 162/302 (53%), Gaps = 13/302 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD---LAFNV 57
           +AVLMGG SSERE+SL SG A  +AL+  G      D   +    L+ LK      AFN+
Sbjct: 7   VAVLMGGFSSEREISLDSGTAILNALKSKGIDAYAFDPKETP---LSELKAQGFQTAFNI 63

Query: 58  LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-SILVNRF 116
           LHG +GEDG VQ  LELL IPYT SG+ ASA+ MDK R K +  + G+PV   ++L +  
Sbjct: 64  LHGTYGEDGAVQGALELLGIPYTGSGVAASAIGMDKYRCKLIWQALGLPVPEFAVLHDDT 123

Query: 117 TMDS-QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175
             D+ +  +  P  +KP        + V+K      L  +     +   +++ E+++ G 
Sbjct: 124 DFDAVEEKLGLPMFVKP--AAEGSSVGVVKVKGKGRLKSVYEELKHLQGEIIAERFIGGG 181

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR-LAFLA 234
           E +C V+    L    I +P ++FY YE KY+  ++ +  P++   +  + + R LA   
Sbjct: 182 EYSCPVLNGKGLPGIHI-IPATEFYDYEAKYNRDDTIYQCPSEDLTEAEESLMRELAVRG 240

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            QAIG  G  R DFL D    K++ LEIN  PGMT  S+ P+ AA  G  F +L + +++
Sbjct: 241 AQAIGAEGCVRVDFLKD-TDGKLYLLEINTLPGMTGHSLVPKSAAVTGVGFADLCIEILK 299

Query: 295 DA 296
            A
Sbjct: 300 TA 301


>gi|317122985|ref|YP_004102988.1| D-alanine--D-alanine ligase [Thermaerobacter marianensis DSM 12885]
 gi|315592965|gb|ADU52261.1| D-alanine--D-alanine ligase [Thermaerobacter marianensis DSM 12885]
          Length = 473

 Score =  154 bits (390), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 93/260 (35%), Positives = 151/260 (58%), Gaps = 18/260 (6%)

Query: 49  LKP-DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV 107
           L+P D+ F VLHG FGEDG VQ +LEL  IPY  +G+L SA+ MDK   K++  + G+PV
Sbjct: 163 LEPLDVVFPVLHGTFGEDGTVQGLLELAGIPYVGAGVLGSAVGMDKAVMKELFRARGLPV 222

Query: 108 CPSILVN--RFTMDSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS 158
            P ++V   R+  +   +I         P   KP   GSS+ I   +  + +   L ++ 
Sbjct: 223 VPFLVVTAARWRREPAAVIDEIEGALGYPCFTKPANLGSSVAIRRCRDRRQLEAGLAEAF 282

Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGD----ASLDVTEIAVPKSDFYSYELKYSSLNSTHV 214
           +++   ++++E+ VD  EL   V+G+    ASL   EI  P+++FY+YE KY+   +  +
Sbjct: 283 AYDR--KVVVERGVDARELEISVLGNDEPVASLP-GEIR-PRAEFYTYEAKYTEGGAELI 338

Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274
           +PA +P  +  E+QRLA  A QAI   G++R DF  +  + ++   EIN  PG T +S++
Sbjct: 339 VPASLPPRLVAEMQRLAVAAFQAIDAAGLARVDFFLERATGRLLVNEINTIPGFTALSMY 398

Query: 275 PEMAAYAGYSFRELLLWMVE 294
           P++   AG S+R+L+  ++E
Sbjct: 399 PKLWEAAGLSYRDLITRLIE 418


>gi|240144453|ref|ZP_04743054.1| D-alanine--D-alanine ligase [Roseburia intestinalis L1-82]
 gi|257203564|gb|EEV01849.1| D-alanine--D-alanine ligase [Roseburia intestinalis L1-82]
          Length = 351

 Score =  154 bits (390), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 108/345 (31%), Positives = 168/345 (48%), Gaps = 55/345 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------------DRSVGLV 45
           + VL GG+S+ER+VS  +G   A AL + G +V  +DV               DRS  + 
Sbjct: 3   IVVLAGGLSTERDVSFKTGDMVAKALRENGHQVILLDVFMGYSDKKEDLTGIFDRSEEVS 62

Query: 46  LA-----HLKPDLA----------------------------FNVLHGNFGEDGLVQAIL 72
           +       + PDLA                            F  LHG  GE+G +QA  
Sbjct: 63  VKVSGIPEIAPDLAKVKASRKDQSDNFFGPNVIELCQMSDIVFMALHGENGENGKIQAAF 122

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF--TMDSQHL-ISPPYV 129
           +L  I YT +G L+SAL+MDK  SK++  S G+P      + +   + D   L +  P V
Sbjct: 123 DLFGIRYTGTGYLSSALAMDKEMSKKLFLSAGIPAPKGASMKKADCSDDITKLGVQFPCV 182

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           +KP  GGSS+G+ +    +     L ++  W   + L++E+YV G E + GV+   +L +
Sbjct: 183 VKPCCGGSSIGVSIAHNAEEYKAALDEAFRWE--ENLIVEEYVKGREFSVGVIEGKALPI 240

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
            EIA P   FY Y+ KY + ++    PA++   + +++Q  A    Q +G    SR+DFL
Sbjct: 241 IEIA-PVQGFYDYKNKYKAGSAVETCPAELSEAVTEKMQHYAEQVAQVLGLDTYSRTDFL 299

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            D  +  ++ LE N  PGMTP S+ P+ A   G +F EL   +++
Sbjct: 300 LDE-NENIYCLEANTLPGMTPTSLLPQEAQVVGVNFNELCEKLIQ 343


>gi|45657718|ref|YP_001804.1| D-alanyl-alanine synthetase A [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|59797586|sp|Q72R93|DDL_LEPIC RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|45600958|gb|AAS70441.1| d-alanine-d-alanine ligase [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
          Length = 351

 Score =  154 bits (390), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 105/345 (30%), Positives = 163/345 (47%), Gaps = 56/345 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           +AV  GG S+E  +S+ +G      L   G  V  I + +  G V+              
Sbjct: 4   IAVFFGGSSTEHSISILTGCFICKTLHTMGHSVKPILLTKDGGWVVPSEYRMSIPFEVSN 63

Query: 49  -----------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
                                  L  D+AF  LHG  GEDG +Q  LE+L IPYT SG+L
Sbjct: 64  SPDLFQEEFQKRYGVSRTNQIFSLDADIAFLGLHGGQGEDGTIQGFLEILGIPYTGSGVL 123

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRF--------TMDSQHLISPPYVIKPLKGGS 137
           ASA++MDK R+ Q+    G  V P   +++          +     +  P  +KP++GGS
Sbjct: 124 ASAIAMDKTRANQIFLQSGQKVAPFFEIDKLEYLNSTDAVITKLETLGFPQFLKPVEGGS 183

Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM--------GDASLDV 189
           S+ +  I   + +   L  +  +    +++ + ++ GIE++CGV+           +L  
Sbjct: 184 SVSVYKITNREQLKEKL--ALIFESDSKVMSQSFLTGIEVSCGVLERYRDGKFKKIALPA 241

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
           TEI VP  +F+ +E KY    S  + PA+I     K VQ LA  AH+++GC G SR+DF+
Sbjct: 242 TEI-VPGGEFFDFESKYKQGGSHEITPARISEQEMKRVQELAIAAHRSLGCSGYSRTDFI 300

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
              ++ +   LE N  PGMT  S+ P+ A  AG S  E+   ++E
Sbjct: 301 I--VNGEPHILETNTLPGMTETSLIPQQAKAAGISMEEVFSDLIE 343


>gi|283468520|emb|CAP18800.1| putative D-ala D-ala ligase [bacterium Ellin514]
          Length = 304

 Score =  154 bits (389), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 101/296 (34%), Positives = 154/296 (52%), Gaps = 10/296 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V++GG S+ REVSL +G A A AL   G +V ++D       + A    ++ F  LHG
Sbjct: 12  ITVMLGGPSAXREVSLRTGGAVAKALRSLGHRVDELDPKEKKWSLPAGT--EVVFLALHG 69

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG VQ  L+ L IPYT     AS L  DK+ +KQ     GVP    ++    +   
Sbjct: 70  TYGEDGTVQRELDKLGIPYTGCDAEASRLGFDKILTKQKCVEAGVPTARFMIFESRSAVW 129

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKK--DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                PP V+KP++ GSS+G+  + +  D S  L    + +  +  Q+L+E+ + G E T
Sbjct: 130 PMGWQPPVVLKPVRQGSSVGLQFVDRVGDWSKKL----AEALRYDTQVLMEERILGRETT 185

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
            G++G+  L + E+  PK+  Y Y+ KY++  + ++ PA     +   +Q  A  A +AI
Sbjct: 186 VGILGNRPLPIVEVR-PKAGNYDYQNKYTAGATEYLCPAPFDEAVTARIQEAALGAFKAI 244

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           G R  S  D +  P    V  LE+N  PGMT  S+ P+ A  AG  + EL   MV+
Sbjct: 245 GGRDYSXVDVMVRPNGEPVV-LEVNTLPGMTETSLLPKAAMAAGIGYAELCQQMVD 299


>gi|169343210|ref|ZP_02864225.1| D-alanine--D-alanine ligase [Clostridium perfringens C str.
           JGS1495]
 gi|169298669|gb|EDS80748.1| D-alanine--D-alanine ligase [Clostridium perfringens C str.
           JGS1495]
          Length = 295

 Score =  154 bits (389), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 96/298 (32%), Positives = 166/298 (55%), Gaps = 9/298 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGGISSERE+S+ SG +   AL+   ++   I ++    L+      D A   LHG
Sbjct: 3   VGVIMGGISSEREISIQSGNSVVHALDKDKYEAIPIVLNEKEDLIEKVKGIDFALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF-TMD 119
            FGEDG VQ++L+ L IP++  G L+SA+ MDK  +K++++   V     ++V+    +D
Sbjct: 63  KFGEDGTVQSVLKTLGIPFSGCGPLSSAICMDKDMTKRILAFGNVRTARWVMVSSVDEID 122

Query: 120 SQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            + +  +  P  IKP  GGSS+   +++  +++   +L++  ++   +++IE+Y+ G E+
Sbjct: 123 YEKIENLGYPVFIKPNNGGSSVATTLVESKEAVEDAVLEALKYDT--EVMIEEYIKGDEI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC ++    L V  I  PK  F+    KY    +   +  K+  D++KEV+++A   ++ 
Sbjct: 181 TCPIIDGKMLPVLAIK-PKGKFFDITSKYEDGGADEFI-VKLNEDLHKEVEKMALETYKL 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           + C   +R D L        + LE+N  PGMT  S+FP+ AA    SF ELL  ++E+
Sbjct: 239 LKCDVYARVDMLVK--DNIPYVLEVNTLPGMTKNSLFPKSAARINMSFEELLDTIIEN 294


>gi|299065610|emb|CBJ36782.1| D-alanine-D-alanine ligase B, affects cell division [Ralstonia
           solanacearum CMR15]
          Length = 331

 Score =  154 bits (388), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 103/304 (33%), Positives = 161/304 (52%), Gaps = 11/304 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V++GG S+ERE+SL SG    +AL   G      D        LA          LHG
Sbjct: 20  VGVILGGRSAEREISLLSGNGVLAALRSRGVDAHPFDPGTQPVAGLAAQGFHRVVISLHG 79

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG +Q +LE   IPYT SG+LASAL+MDK  +K++  +  +P  P  ++     D 
Sbjct: 80  RFGEDGTIQGLLEQFGIPYTGSGVLASALAMDKEATKRLWQTHSLPT-PDFVMLHAGADW 138

Query: 121 QHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
           Q +   +  P ++KP + GSS+G+  +     +P    +++  +    ++ EQ++DG EL
Sbjct: 139 QAVADRLGLPLIVKPAREGSSIGLTKVTSVAELPAAYEKAARLDR--DVMAEQFIDGDEL 196

Query: 178 TCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           TC V+G+     +L +  I  P+++ Y Y+ KY + ++ +  PA IP D    VQ L   
Sbjct: 197 TCAVIGEGEHATALPLIRIVAPQAN-YDYQHKYFTDDTRYECPAPIPADAAARVQALVVQ 255

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           A++++GCRG  R+D +        F LE+N  PGMT  S+ P  A   G S+ + +L + 
Sbjct: 256 AYRSLGCRGWGRADIMLRKHDGAPFLLEMNTSPGMTGHSLVPMAARAVGISYEDFVLQLA 315

Query: 294 EDAS 297
             AS
Sbjct: 316 ATAS 319


>gi|17547561|ref|NP_520963.1| D-alanine--D-alanine ligase [Ralstonia solanacearum GMI1000]
 gi|39930909|sp|Q8XVI9|DDL_RALSO RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|17429865|emb|CAD16549.1| probable d-alanine--d-alanine ligase (d-alanylalanine
           synthetase)(d-ala-d-ala ligase) protein [Ralstonia
           solanacearum GMI1000]
          Length = 331

 Score =  154 bits (388), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 102/304 (33%), Positives = 161/304 (52%), Gaps = 11/304 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V++GG S+ERE+SL SG    +AL   G      D        LA          LHG
Sbjct: 20  VGVILGGRSAEREISLLSGNGVLAALRSRGVDAHPFDPGTQPVAGLAAQGFHRVVISLHG 79

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG +Q +LE   IPYT SG+LASAL+MDK  +K++  +  +P  P  ++     D 
Sbjct: 80  RFGEDGTIQGLLEQFGIPYTGSGVLASALAMDKEATKRLWQTHSLPT-PDFVMLHAGADW 138

Query: 121 QHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
           Q +   +  P ++KP + GSS+G+  +     +P    +++  +    ++ EQ++DG EL
Sbjct: 139 QAVADRLGLPLIVKPAREGSSIGLTKVTSVAELPAAYEKAARLDR--DVMAEQFIDGDEL 196

Query: 178 TCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           TC V+G+     +L +  I  P+++ Y Y+ KY + ++ +  PA IP +    VQ L   
Sbjct: 197 TCAVIGEGEHATALPLIRIVAPQAN-YDYQHKYFTDDTRYECPAPIPAEAAARVQALVVQ 255

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           A++++GCRG  R+D +        F LE+N  PGMT  S+ P  A   G S+ + +L + 
Sbjct: 256 AYRSLGCRGWGRADIMLRKHDGAPFLLEMNTSPGMTGHSLVPMAARAVGISYEDFVLQLA 315

Query: 294 EDAS 297
             AS
Sbjct: 316 ATAS 319


>gi|213418537|ref|ZP_03351603.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Typhi str. E01-6750]
          Length = 252

 Score =  154 bits (388), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 93/251 (37%), Positives = 141/251 (56%), Gaps = 13/251 (5%)

Query: 55  FNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
           F  LHG  GEDG +Q +LELL +PYT SG++ASALSMDK+RSK +    G+PV P + + 
Sbjct: 5   FIALHGRGGEDGTLQGMLELLGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALT 64

Query: 115 R------FTMDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
           R       + + +  IS    P ++KP + GSS+G+  + ++ ++   L  S ++ H D+
Sbjct: 65  RAEFEKGLSEEQKARISALGLPLIVKPSREGSSVGMTKVVEENALQGAL--SLAFQHDDE 122

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
           +LIE+++ G E T  ++G+  L    I  P   FY YE KY S  + +  PA +      
Sbjct: 123 ILIEKWLCGPEFTVAIVGEEILPSIRIQ-PAGTFYDYEAKYLSDETQYFCPAGLEASQEA 181

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285
            +Q L   A +A+GC G  R D + D    + + LE N  PGMT  S+ P  A  AG SF
Sbjct: 182 ALQSLVLQAWKALGCTGWGRIDVMLDS-DGQFYLLEANTSPGMTSHSLVPMAARQAGMSF 240

Query: 286 RELLLWMVEDA 296
            +L++ ++E A
Sbjct: 241 SQLVVRILELA 251


>gi|312795063|ref|YP_004027985.1| D-alanine--D-alanine ligase [Burkholderia rhizoxinica HKI 454]
 gi|312166838|emb|CBW73841.1| D-alanine--D-alanine ligase (EC 6.3.2.4) [Burkholderia rhizoxinica
           HKI 454]
          Length = 315

 Score =  154 bits (388), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 102/297 (34%), Positives = 151/297 (50%), Gaps = 11/297 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG SSER+VSL SG+     L DAG      D        L       AF  LHG
Sbjct: 14  VAVLYGGESSERDVSLVSGRLACQGLRDAGVDAYLFDPKERPLSALKDEGFARAFIALHG 73

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---FT 117
            +GE+G +Q  L+   I YT  G+L SAL MDK R+K +    G+P  P   V R   + 
Sbjct: 74  GYGENGQIQGALDFYGIRYTGPGVLGSALGMDKFRTKLIWQQLGIPTPPFDTVLRGEDYD 133

Query: 118 MDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD- 173
           M +Q +++    P  +KP   GSS+ +  +K   ++P  L Q++   H   +L+E+ +D 
Sbjct: 134 MRAQQIVAKLGLPLFVKPATEGSSVAVFKVKAADNLPHALAQAA--RHDPVVLVEKSIDG 191

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           G E T  + G   L +  I VP  +FY Y  KY + ++ +++P  +     + +  LA  
Sbjct: 192 GGEYTACIAGSLPLPLIRI-VPAGEFYDYHAKYVADDTQYLIPCGLSDADEQRLTALARR 250

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A + + C    R+DF+ D      F LE+N  PGMT  S+ P+ A   G S+ ELL+
Sbjct: 251 AFEVLACTAWGRADFMLDSDGNPYF-LEVNTSPGMTDHSLPPKAARAVGISYSELLV 306


>gi|254786995|ref|YP_003074424.1| D-alanine--D-alanine ligase B [Teredinibacter turnerae T7901]
 gi|237685827|gb|ACR13091.1| D-alanine--D-alanine ligase B [Teredinibacter turnerae T7901]
          Length = 317

 Score =  154 bits (388), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 106/294 (36%), Positives = 160/294 (54%), Gaps = 12/294 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-DRSVGLVLAHLKPDLAFNVLH 59
           +AVL GG S+ER+VSL SG+A A+ L + G  + ++D+ ++ V  +LA    D AF  LH
Sbjct: 19  VAVLYGGTSAERDVSLKSGRAVANGLREQGIDILELDIGNQGVAQILAA-TFDRAFIALH 77

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV----NR 115
           G  GEDG VQA+L+LL IP+T S   ASA++MDK+++KQ+  S  +P  P   V    + 
Sbjct: 78  GEGGEDGKVQALLQLLGIPFTGSLHTASAIAMDKLKTKQIWLSASLPT-PDYRVLQSSDD 136

Query: 116 FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175
           F    Q L    +V KP+  GSS+G+      + +      +  ++   ++  E  V G 
Sbjct: 137 FAACLQALGGSVFV-KPVHEGSSIGMTCANNKEELKAAFEAAEKFD--SEVFAESTVVGR 193

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
           E T  ++G+  L   E+ +P + FY Y+ KY S  + ++ P  +  D  KE+  LA  + 
Sbjct: 194 EFTVAILGETVLPPIEL-LPSNRFYDYDAKYISNETRYLCPCNLTPDKNKELCELALKSF 252

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           + IGC G  R D L D  +     LE+N  PGMT  S+ P  A   G +F EL+
Sbjct: 253 KMIGCSGWGRVDALQDE-AGNFHLLEVNTVPGMTDHSLVPMAARAVGLNFSELV 305


>gi|160872919|ref|ZP_02063051.1| D-alanine--D-alanine ligase (D-alanylalanine
           synthetase)(D-Ala-D-Ala ligase) [Rickettsiella grylli]
 gi|159121718|gb|EDP47056.1| D-alanine--D-alanine ligase (D-alanylalanine
           synthetase)(D-Ala-D-Ala ligase) [Rickettsiella grylli]
          Length = 365

 Score =  154 bits (388), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 100/345 (28%), Positives = 173/345 (50%), Gaps = 53/345 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +AVL GG S+E E+SL S  A    L+   F +  I +D+     +  L+          
Sbjct: 11  VAVLYGGFSAEHEISLLSAAAVIKNLDQRKFSIIPIGIDKQGRCFVNQLQSLYSGDTILL 70

Query: 52  ----------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
                                 D+ F VLHG  GEDG +Q +L+L++I Y  + +L SA+
Sbjct: 71  ETENAQSFSGLAELMVDKKGHYDVVFPVLHGALGEDGTIQGLLDLMDIAYIGADVLGSAV 130

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNR---------FTMDSQHLISPPYVIKPLKGGSSLG 140
            MDK+ SK++  +  +PV P +  N          ++   +  I  P  IKP+ GGSSLG
Sbjct: 131 GMDKVVSKRLACAAHIPVVPFLAFNSGHWLRNKSLYSQQIRQEIGYPLFIKPVNGGSSLG 190

Query: 141 IIVIKKDQSI--PLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD----ASLDVTEIA- 193
           I  IKKD  +   ++L+    + +  ++L+E+ ++  E+   V+ +    A   V++I  
Sbjct: 191 ITKIKKDTDLENAIELV----FTYSTKVLVEKALEVREVEIAVLENQKWGAEPYVSQIGE 246

Query: 194 -VPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
            +P+ +FYSYE KY        ++PA +     ++++RLA      + C G++R DF  +
Sbjct: 247 IIPRHEFYSYEAKYLDEKGAQLIIPASLQNSQLQQIKRLAIELFNGLDCSGMARIDFFIE 306

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             S+K+++ E+N  PG T +S++P +   +G ++  LL  ++E A
Sbjct: 307 KRSQKIYFNELNTIPGFTKISMYPRLWEVSGIAYTSLLTHLIELA 351


>gi|126650619|ref|ZP_01722842.1| D-alanylalanine synthetase [Bacillus sp. B14905]
 gi|126592775|gb|EAZ86774.1| D-alanylalanine synthetase [Bacillus sp. B14905]
          Length = 308

 Score =  154 bits (388), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 98/293 (33%), Positives = 159/293 (54%), Gaps = 11/293 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGG SSE++VS+ +GK   + L    + V +I ++    ++      D+A   LHG
Sbjct: 10  VGVIMGGTSSEKQVSIMTGKEMVAHLNKQKYDVVEIVLEDHQEVIEKVQGIDVALLALHG 69

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVNRF 116
            FGEDG +Q +LE L IPYT SG+LAS+L MDK  +K+++   G+   P     +     
Sbjct: 70  KFGEDGTIQGVLETLGIPYTGSGLLASSLCMDKNMAKKILRYEGI-ATPDWMHLVKGEEL 128

Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
            +    L+  P V+KP  GGSS+G+ ++    ++   + +   W+  ++++IEQY+ G E
Sbjct: 129 PLQDIELMGYPLVVKPNAGGSSVGVQIVHDRNALLTAVAEVLKWD--NEIIIEQYMIGDE 186

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +TC ++ D  L V  I    + F+ Y+ KY    ST   P ++PL I+  V + A  ++ 
Sbjct: 187 ITCPILNDRLLPVLSIK-HTAVFFDYQAKYDD-ASTIEEPVELPLAIHDRVAKAAMTSYT 244

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           ++ C   +R D L        + LE+N  PGMT  S+ P+ A  AG S+  LL
Sbjct: 245 SLKCSVYARVDMLIK--EGVPYVLEVNTLPGMTQNSLLPKSAFAAGISYSALL 295


>gi|332295511|ref|YP_004437434.1| D-alanine--D-alanine ligase [Thermodesulfobium narugense DSM 14796]
 gi|332178614|gb|AEE14303.1| D-alanine--D-alanine ligase [Thermodesulfobium narugense DSM 14796]
          Length = 308

 Score =  154 bits (388), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 103/315 (32%), Positives = 167/315 (53%), Gaps = 35/315 (11%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP----------- 51
           +L GG SSE+EVS+ S +    +L +  + V  +D+        A L P           
Sbjct: 5   ILCGGTSSEKEVSIWSAENVYKSLINTEYIVEMVDI--------ATLSPYELCQKILCEN 56

Query: 52  -DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            DL F VLHG  GEDG +Q  L+ L I Y  SG+ + A++MDK R K +  S   P  P 
Sbjct: 57  FDLVFPVLHGKPGEDGSIQGFLDTLGIKYIGSGVFSCAITMDKYRYKLICKSLEFPQ-PD 115

Query: 111 ILVNRFTMDSQHLIS------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164
            +  R T DS  ++        P V+KP   GSS+G+ ++  +  +  D L+   + +  
Sbjct: 116 FIAIR-TKDSTEVLEFVRLKGFPLVVKPNSQGSSVGVSIVNNNNELK-DALE-LGFKYDP 172

Query: 165 QLLIEQYVDGIELTCGVMGDAS---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL 221
            +L+E+++ G E+TCGV+G+++   L + EI +PK+ F+ YE KY+      ++PA++  
Sbjct: 173 IVLVEEFIHGKEITCGVIGNSNVIALPLVEI-LPKTKFFDYESKYNPQLCDEIVPARLND 231

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYA 281
           ++   +Q LA  A++A  C+   R D   D     ++  EIN  PG+T  S+F +    A
Sbjct: 232 NLKDRLQELAIKAYKAFDCKCFGRVDMFVDKYEN-IYLSEINTIPGLTANSLFTKEVKAA 290

Query: 282 GYSFRELLLWMVEDA 296
           GYSF+E++  +V+ A
Sbjct: 291 GYSFQEIVKLLVKLA 305


>gi|330877371|gb|EGH11520.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 363

 Score =  154 bits (388), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 101/344 (29%), Positives = 177/344 (51%), Gaps = 55/344 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------------------- 40
           +A++ GG SSE EVSL S +   +A++   + ++ I VD+                    
Sbjct: 5   VAIVFGGQSSEHEVSLQSARNVINAIDRESYALTLIGVDKLGRWLRFDEADYLLNANDPA 64

Query: 41  ----------------SVGLVLAHL---KP----DLAFNVLHGNFGEDGLVQAILELLEI 77
                           S G     +   KP    D+ F ++HG FGEDG +Q +L +L +
Sbjct: 65  RIKLSGSGKQLSLLPGSAGGQFVEVESGKPLTAIDVVFPLIHGAFGEDGALQGLLRMLAV 124

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR-----FTMDSQHLISPPYVIKP 132
           P+  + +LASA  MDK  +K+++   G+ V P +++NR     F   +  L S P  +KP
Sbjct: 125 PFVGADVLASAACMDKDVTKRLLRDAGIAVAPFMVLNRGESLSFAQAAAQL-SLPMFVKP 183

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD--ASLDVT 190
              GSS+G+  +  +      L     ++H  +LLIEQ + G E+ C V+G+  A + V 
Sbjct: 184 ANQGSSVGVSKVSDEAGFAAALALGFEFDH--KLLIEQGIVGREVECAVLGNNEAQVSVC 241

Query: 191 EIAVPKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
              +   +FY+Y+ KY + +   + +PA++P D+  +V+ +A  A++ +GC G+SR DF 
Sbjct: 242 GEVIANDEFYAYDTKYLNGDQARIAIPAELPADLSDQVRDVALQAYKVLGCAGLSRVDF- 300

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           F   +R++   E+N  PG T +S++P++   +G S+ EL+  ++
Sbjct: 301 FVTEAREIIINEVNTLPGFTSISMYPKLWQASGLSYAELIHRLI 344


>gi|154509346|ref|ZP_02044988.1| hypothetical protein ACTODO_01874 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798980|gb|EDN81400.1| hypothetical protein ACTODO_01874 [Actinomyces odontolyticus ATCC
           17982]
          Length = 378

 Score =  154 bits (388), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 87/266 (32%), Positives = 145/266 (54%), Gaps = 18/266 (6%)

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV 105
           L H+  D+ F +LHG +GEDG +Q + E+  + Y   G+ +SA+SMDK  +K V+++ G+
Sbjct: 110 LGHV--DIVFPLLHGPYGEDGTIQGLFEMAGVRYVGCGVTSSAVSMDKHLTKTVLAAAGI 167

Query: 106 PVCPSILV--------NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
            V    LV        +   MD    +  P  +KP + GSS+GI  +   + +P+ + ++
Sbjct: 168 DVGQWELVTARQWDADSTACMDRIERLGFPVFVKPCRAGSSVGISRVTCREDLPVAIKEA 227

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDAS------LDVTEIAVPKSDFYSYELKYSSLNS 211
           +  NH  ++++E  + G E+ CGV+G  S        + EI VP+ +FY YE KY     
Sbjct: 228 A--NHDPRIIVEASISGREVECGVLGSRSDWRSGTAPLGEIVVPEGEFYDYEHKYVDDVV 285

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271
               PA +  +    ++  A+ A  A+ C G++R DF  D  S  V   E+N  PG TP+
Sbjct: 286 GLSCPADVAPEYADRIRETAWRAFDALECEGLARVDFFLDEASDTVIINEVNTMPGFTPI 345

Query: 272 SIFPEMAAYAGYSFRELLLWMVEDAS 297
           S++P+M A AG S+ +LL  ++ +A+
Sbjct: 346 SMYPQMWAAAGLSYPDLLTELLTEAA 371


>gi|33593952|ref|NP_881596.1| D-alanine--D-alanine ligase [Bordetella pertussis Tohama I]
 gi|33603171|ref|NP_890731.1| D-alanine--D-alanine ligase [Bordetella bronchiseptica RB50]
 gi|39930855|sp|Q7VUQ5|DDL_BORPE RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|39930860|sp|Q7WFS4|DDL_BORBR RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|33564026|emb|CAE43292.1| D-alanine--D-alanine ligase B [Bordetella pertussis Tohama I]
 gi|33568802|emb|CAE34560.1| D-alanine--D-alanine ligase B [Bordetella bronchiseptica RB50]
 gi|332383370|gb|AEE68217.1| D-alanine--D-alanine ligase [Bordetella pertussis CS]
          Length = 316

 Score =  154 bits (388), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 115/308 (37%), Positives = 164/308 (53%), Gaps = 18/308 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VL GG S+EREVSL SGK    AL  AG      D        LA    +  F  LHG
Sbjct: 8   VGVLYGGRSAEREVSLMSGKGVHEALLSAGVDAHLFDTGERSLADLAAAGFERVFIALHG 67

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV------N 114
            +GEDG +Q  LELL IPYT SG LAS+LSMDK+ +K+V    G+P  P+  V       
Sbjct: 68  RYGEDGTLQGALELLGIPYTGSGPLASSLSMDKIMTKRVWLQHGLPT-PAFEVLGGSTEL 126

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
           R   D   L   P ++KP   GS++GI  +     +      ++ ++   ++L EQ++ G
Sbjct: 127 RLVPDRLGL---PLILKPPHEGSTVGITKVAGYSDMKAAYELAARFDA--EVLAEQFITG 181

Query: 175 IELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            ELT  V+G      +L V EI  P  + Y YE KY S ++ +  PA +P D+  +V  +
Sbjct: 182 RELTVAVLGSGAAARALPVIEIVAPGGN-YDYEHKYFSDDTQYFCPADLPADVAADVAAV 240

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A  A+ A+GC G  R DF+ D  +R  + LE+N  PGMT  S+ P  A   G S+ +L +
Sbjct: 241 AERAYAALGCEGWGRVDFILDRENRP-WLLEMNTSPGMTGHSLVPMAARAVGMSYADLCV 299

Query: 291 WMVEDASC 298
            ++ +A+C
Sbjct: 300 AILAEAAC 307


>gi|108805132|ref|YP_645069.1| D-alanine--D-alanine ligase [Rubrobacter xylanophilus DSM 9941]
 gi|108766375|gb|ABG05257.1| D-alanine--D-alanine ligase [Rubrobacter xylanophilus DSM 9941]
          Length = 318

 Score =  154 bits (388), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 101/313 (32%), Positives = 170/313 (54%), Gaps = 24/313 (7%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S ER+VSL++G+    ALE  G +V  +DV+ +    L  L+P   F  LHG
Sbjct: 4   LAVLRGGHSMERDVSLATGRRVQHALERLGHEVHPMDVEETTTERLIELEPAAVFVCLHG 63

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG VQA+LE L IPYT SG L+S   MDK  +K+ +++ G+P        R  M+ 
Sbjct: 64  PGGEDGTVQALLETLGIPYTGSGPLSSIRCMDKDYAKRALAAAGLPTPRFCTFVRRAMNE 123

Query: 121 QHL----------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS--SSWNHGDQLLI 168
                        +  P V+KP + GSS G+  +++    P +LL +   ++ +  ++L+
Sbjct: 124 MGAAAALNVAADSLGYPLVVKPAREGSSFGLSRVER----PEELLDAVYEAFGYDAKILL 179

Query: 169 EQYVDGIELTCGVM---GDA--SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           E++V+G E++  ++   G+A  +L + EI  P+   Y+++ KY+   +   +PA++P   
Sbjct: 180 ERWVEGREVSVPILEPAGEAPRALGLVEIR-PREGAYNFQAKYTPGMTDFAIPAELPPGT 238

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283
              ++  A   ++ +GC G +R D + +  + +V  L++   PG T  S FP  A  AG 
Sbjct: 239 ASRLEETALAVYRTLGCSGFARVDTIVEGETPQV--LDVKTIPGFTETSTFPLAAEAAGL 296

Query: 284 SFRELLLWMVEDA 296
           SF  L+  +++ A
Sbjct: 297 SFERLVEIILDSA 309


>gi|283468533|emb|CAP19205.1| putative D-ala D-ala ligase [Prosthecobacter vanneervenii]
          Length = 307

 Score =  153 bits (387), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 107/300 (35%), Positives = 155/300 (51%), Gaps = 14/300 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +A+LMGG  SER+VSL + ++ A AL   G  V ++DV      V   +   +A N++HG
Sbjct: 9   IALLMGGPGSERKVSLKTAESVAEALRSKGATVVEVDVTGPDFEVPGDVF--IAMNLIHG 66

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119
            FGEDG +Q+ILE   I YT +G+ +S ++ DK+ SK+   + GVP   S     + +D 
Sbjct: 67  TFGEDGQIQSILEQRGIRYTGAGVASSRIAFDKLLSKERFIAAGVPTPRS---QTYPLDG 123

Query: 120 SQHL-ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           SQ L I  P V+KP + GSS+G+ +      +   L  +  + H    LIE YV G ELT
Sbjct: 124 SQPLAIGLPLVVKPPREGSSVGVHICHTQAELESALEDAKKFGH--DTLIEDYVAGKELT 181

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST----HVLPAKIPLDIYKEVQRLAFLA 234
            GV+GD  L +  I  P   FY    KY  +  T    +  PA +  ++ K VQ  A  A
Sbjct: 182 VGVLGDQVLPIIHIE-PVEGFYDINNKYPWMGGTGKTNYNCPANLSPEVTKAVQDAALKA 240

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            Q+ G     R D +     +  F LE+N  PGMT  S+ P+ A   G  F +L   ++E
Sbjct: 241 FQSCGTEVYGRVDVMLRDSDQAPFVLEVNTIPGMTSSSLLPKAAKAVGIEFPDLCAKIIE 300


>gi|89894325|ref|YP_517812.1| hypothetical protein DSY1579 [Desulfitobacterium hafniense Y51]
 gi|89333773|dbj|BAE83368.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 361

 Score =  153 bits (387), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 104/341 (30%), Positives = 166/341 (48%), Gaps = 52/341 (15%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS--------------------V 42
           +L GG S E EVSL+S  +   A++   +++  I + ++                    +
Sbjct: 8   ILFGGQSGEHEVSLNSASSVLKAIDQEKYEIETIGIAKNGQWHWGIRPEQWQQDPALEGI 67

Query: 43  GLVLAH--------------LKPD----LAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84
            ++LAH              L  D    L F VLHG FGEDG +Q + E+  IPY  SG+
Sbjct: 68  PVILAHDPTNPRFIALDGSSLPQDGKFALIFPVLHGPFGEDGTIQGLFEMANIPYAGSGV 127

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKG 135
           L SAL MDK R K V +  G+P  P I V R  +           +H +  P  +KP   
Sbjct: 128 LGSALGMDKDRMKAVFTEAGLPQAPYITVLRTMLQKPMEQLLDNIEHSLGYPCFVKPANL 187

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG--DASLDVTEIA 193
           GSS+GI   +  + +   L  ++ ++   +L++EQ + G E+   V+G  DA   +    
Sbjct: 188 GSSVGISKARNKEELIQALQLAAEYDR--KLVVEQNIVGREIELSVLGNEDAQASIPGEI 245

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
           +P  DFY YE KY    S  V+PA +  ++ + +Q  A  A +A+   G+SR DF     
Sbjct: 246 LPAKDFYDYEAKYIDTGSQLVIPAPLAPEVVRSLQEKAVAAFKAVEACGLSRVDFFVTEG 305

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           S +++  EIN  PG T +S++P++   +G  + EL+  ++E
Sbjct: 306 S-QIYINEINTMPGFTQISMYPKLWEASGIPYTELITRLIE 345


>gi|117928793|ref|YP_873344.1| D-alanine--D-alanine ligase [Acidothermus cellulolyticus 11B]
 gi|117649256|gb|ABK53358.1| D-alanine--D-alanine ligase [Acidothermus cellulolyticus 11B]
          Length = 377

 Score =  153 bits (387), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 101/354 (28%), Positives = 163/354 (46%), Gaps = 63/354 (17%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +AV+ GG S+E  +S  +     +AL  AG+ V  I + R    VL    P         
Sbjct: 17  VAVVFGGRSTEHAISCLTAGGVMTALTAAGYDVCAIGITRDGRWVLPPADPAPLTAKDGR 76

Query: 52  -------------------------------------DLAFNVLHGNFGEDGLVQAILEL 74
                                                D+AF VLHG FGEDG +Q + E+
Sbjct: 77  LPEVDASHPPVVVVPDPADPGLFVRDVSGRLRSLGRIDVAFPVLHGPFGEDGTIQGLFEM 136

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTMDSQHL------ISP 126
             IPY  SG+ ASA +MDK   K +    G+P  P ++V  + +  D   +      +  
Sbjct: 137 AGIPYVGSGVFASAAAMDKQFMKVLFVGAGLPDVPHVVVTPDEWRTDPAAVRESVASLGF 196

Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186
           P  +KP +GGSS+ +  + K   +  D     +     ++L+E+ +DG E+  GV+ D  
Sbjct: 197 PVFVKPARGGSSVAVTKVHKPADV--DEAIERAREVDPKVLVERAIDGREIEVGVLDDVH 254

Query: 187 LDVTEIAVPKS------DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
               +++VP        +FY +E KY    +   +PA +P  + + V R A +A++A+GC
Sbjct: 255 GGAPKVSVPAEILVRGREFYDFEAKYLDQGTVITIPASLPPAVLQTVNRYAVIAYRALGC 314

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            G++R DF F   + +VF  E+N  PG TP S+FP +    G  +  L+ ++V+
Sbjct: 315 EGLARVDF-FVTATGEVFVNELNTMPGFTPTSVFPRVWQATGLEYPALVDYLVQ 367


>gi|308068770|ref|YP_003870375.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)
           (D-Ala-D-Ala ligase) [Paenibacillus polymyxa E681]
 gi|305858049|gb|ADM69837.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)
           (D-Ala-D-Ala ligase) [Paenibacillus polymyxa E681]
          Length = 309

 Score =  153 bits (387), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 93/294 (31%), Positives = 164/294 (55%), Gaps = 10/294 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--LAHLKPDLAFNVL 58
           + V+MGGISSERE+SL +G+   + L+ + ++V  + +++   L+  +     D+A   L
Sbjct: 3   IGVIMGGISSEREISLQTGQEMINHLDRSRYEVVPMVIEQRADLITQVQQAGIDIAMLAL 62

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL---VNR 115
           HG +GEDG VQ  LE L IPYT SG+LAS+L M+K  SK ++ + GV     +    ++ 
Sbjct: 63  HGQYGEDGTVQGALETLGIPYTGSGVLASSLCMNKQLSKTLLKAAGVHTPAGLCWQGMDD 122

Query: 116 FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175
           +       +  P ++KP  GGSS+GI +++ ++ +   + ++ S +    +LIE Y  G 
Sbjct: 123 YDPQVVERLGYPVIVKPNTGGSSIGIQLVQNEKELLPAVQEACSLDQA--ILIEPYYKGT 180

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
           E+TC ++    L +  I+   S ++ Y+ KY    +   +  ++P  I + V+  A  ++
Sbjct: 181 EITCSIVDGEVLPIISISSAHSKWFDYKAKYEVGGAEEKV-VELPPVIEQRVREAALASY 239

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           + + C+  +R D +      + + LE+N  PGMT  S+ P+ AA AG +F +LL
Sbjct: 240 RLLQCKVYARVDMIL--CQDRPYVLEVNTLPGMTANSLLPKSAAAAGITFTQLL 291


>gi|297545503|ref|YP_003677805.1| D-alanine/D-alanine ligase [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
 gi|296843278|gb|ADH61794.1| D-alanine/D-alanine ligase [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
          Length = 359

 Score =  153 bits (386), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 103/340 (30%), Positives = 174/340 (51%), Gaps = 55/340 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           +AVL GG S E EVSL S K+  + L+   +++  + + +     L              
Sbjct: 6   IAVLFGGQSGEHEVSLMSAKSIINNLDKDKYEIYMVGITKKGEWYLYRGDVEKIETGEWE 65

Query: 49  ---------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81
                                         D+ F VLHG  GEDG +Q +LELL+IPY  
Sbjct: 66  KEGIPATMGASTKYRGIITFEEGKNVFFPIDVVFPVLHGPNGEDGTIQGLLELLDIPYVG 125

Query: 82  SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--------QHLISPPYVIKPL 133
           + +L+SAL MDK+ +K++    G+P    ++V R  +          +HL  P +V KP 
Sbjct: 126 ANVLSSALCMDKVFTKRIFKEAGLPTPDFVVVYRKEIGDLETIKKKIEHLGYPCFV-KPA 184

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT--- 190
             GSS+GI  +  ++ +P  L  ++ ++   +LLIE+ ++  E+ C V+G+ + + +   
Sbjct: 185 NLGSSVGITKVHNEEELPGALKLAAKYDR--KLLIEKGIEAREIECSVLGNENPEASVAG 242

Query: 191 EIAVPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
           EI VP ++FY Y  KY     S  ++PA +P +  +E+++LA  A++A+  RG++R DFL
Sbjct: 243 EI-VPSNEFYDYNAKYFDGGKSLLLIPAPLPDEKMEEIRKLAIKAYRALDLRGMARVDFL 301

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
            D  +  V+  E+N  PG T +S++P++   +G S+  LL
Sbjct: 302 MDRNTGTVYLNEVNTIPGFTKISMYPKLWEASGKSYSALL 341


>gi|213970839|ref|ZP_03398962.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. tomato T1]
 gi|301384525|ref|ZP_07232943.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. tomato
           Max13]
 gi|302060687|ref|ZP_07252228.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. tomato K40]
 gi|302130483|ref|ZP_07256473.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. tomato
           NCPPB 1108]
 gi|213924362|gb|EEB57934.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. tomato T1]
          Length = 363

 Score =  153 bits (386), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 102/344 (29%), Positives = 177/344 (51%), Gaps = 55/344 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------------------- 40
           +A++ GG SSE EVSL S +   +A++   + ++ I VD+                    
Sbjct: 5   VAIVFGGQSSEHEVSLQSARNVINAIDRESYALTLIGVDKLGRWLRFDEADYLLNANDPA 64

Query: 41  ----------------SVGLVLAHL---KP----DLAFNVLHGNFGEDGLVQAILELLEI 77
                           SVG     +   KP    D+ F ++HG FGEDG +Q +L +L +
Sbjct: 65  RIKLSGSGKQLSLLPGSVGGQFVEVESGKPLAAIDVVFPLIHGAFGEDGALQGLLRMLAV 124

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR-----FTMDSQHLISPPYVIKP 132
           P+  + +LASA  MDK  +K+++   G+ V P +++NR     F   +  L S P  +KP
Sbjct: 125 PFVGADVLASAACMDKDVTKRLLRDAGIAVAPFMVLNRGESLSFAQAAAQL-SLPMFVKP 183

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD--ASLDVT 190
              GSS+G+  +  +      L     ++H  +LLIEQ + G E+ C V+G+    + V 
Sbjct: 184 ANQGSSVGVSKVSDEAGFAAALALGFEFDH--KLLIEQGIVGREVECAVLGNDEPQVSVC 241

Query: 191 EIAVPKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
              V   +FY+Y+ KY + +   + +PA++P D+  +V+ +A  A++ +GC G+SR DF 
Sbjct: 242 GEVVANDEFYAYDTKYLNGDQARIAIPAELPADLSDQVRDVALQAYKVLGCAGLSRVDF- 300

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           F   +R++   E+N  PG T +S++P++   +G S+ EL+  ++
Sbjct: 301 FVTGAREIIINEVNTLPGFTSISMYPKLWQASGLSYAELIHRLI 344


>gi|150392272|ref|YP_001322321.1| D-alanine--D-alanine ligase [Alkaliphilus metalliredigens QYMF]
 gi|149952134|gb|ABR50662.1| D-alanine--D-alanine ligase [Alkaliphilus metalliredigens QYMF]
          Length = 366

 Score =  153 bits (386), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 83/266 (31%), Positives = 152/266 (57%), Gaps = 16/266 (6%)

Query: 38  VDRSVGLVLAH---LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKM 94
            D   G+VL +    K D+ F VLHG +GEDG +Q + E+++IPY   G++ASA++MDK+
Sbjct: 87  TDGKQGIVLQNGEVKKIDVIFPVLHGPYGEDGRIQGLFEMIDIPYVGCGVMASAVAMDKV 146

Query: 95  RSKQVVSSCGVPVCPSILV--NRFTMDSQHLISP-------PYVIKPLKGGSSLGIIVIK 145
            +K+V+ +  +   P  ++   RF +D    ++        P  +KP   GSS+GI   K
Sbjct: 147 ITKKVLEAEKIAQTPYQVIYGRRFQLDPLKYLNDLEATFEYPVFVKPANMGSSVGISKAK 206

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA--VPKSDFYSYE 203
             +++ + + ++  ++  ++++IE +V+G E+ C V+G+ +  V   A  +P  +FY Y 
Sbjct: 207 NREALKIAIKEAGKYD--NKIVIEAFVEGREIECAVLGNEAPRVALPAEIIPSHEFYDYH 264

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            KY    S +V+P  +  ++ +E+Q LA   ++ + CRG+SR DF  +  + +V   E+N
Sbjct: 265 DKYFDGTSRYVIPPDLSEELIQEIQHLAIQTYELLDCRGLSRIDFFVENETNRVLVNEVN 324

Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELL 289
             PG T +S++P+M    G  + +L+
Sbjct: 325 TMPGFTKISMYPKMWEATGLPYDKLI 350


>gi|183981746|ref|YP_001850037.1| d-alanine--D-alanine ligase DdlA [Mycobacterium marinum M]
 gi|183175072|gb|ACC40182.1| d-alanine--D-alanine ligase DdlA [Mycobacterium marinum M]
          Length = 373

 Score =  153 bits (386), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 95/268 (35%), Positives = 153/268 (57%), Gaps = 20/268 (7%)

Query: 43  GLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS 102
           G VLA +  D+ F VLHG +GEDG +Q +LEL  +PY  +G+LASA  MDK  +K++ S+
Sbjct: 104 GEVLASV--DVVFPVLHGPYGEDGTIQGLLELAGVPYVGAGVLASAAGMDKEFTKKLWSA 161

Query: 103 CGVPVCPSILV--NRFTMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS 158
            G+P+ P  ++  +R ++D + L  +  P  +KP +GGSS+G+  +     +P  +  ++
Sbjct: 162 AGLPIGPHAVLRPSRQSLDREELQRLGLPAYVKPARGGSSIGVSRVSSFDELPAAI--AA 219

Query: 159 SWNHGDQLLIEQYVDGIELTCGVMG--DASLDVT---EIAVP-----KSDFYSYELKYSS 208
           +  H  ++++E  ++G EL CGV+   D  L+ +   EI V      +  FY +E KY  
Sbjct: 220 ARRHDPKVIVEAAINGRELECGVLEFPDGRLEASTLGEIRVAGVRGREDGFYDFETKYLD 279

Query: 209 LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268
             +   +PAK+  D+   V++LA  A +AI C+G++R DF        +   EIN  PG 
Sbjct: 280 DAAELDVPAKVEDDVADAVRQLAIRAFEAIDCQGLARVDFFLTDDGPVIN--EINTMPGF 337

Query: 269 TPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           T +S++P M A +G  +  LL  MVE A
Sbjct: 338 TTISMYPRMWAASGVDYPTLLATMVETA 365


>gi|189462985|ref|ZP_03011770.1| hypothetical protein BACCOP_03687 [Bacteroides coprocola DSM 17136]
 gi|189430267|gb|EDU99251.1| hypothetical protein BACCOP_03687 [Bacteroides coprocola DSM 17136]
          Length = 326

 Score =  153 bits (386), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 102/325 (31%), Positives = 164/325 (50%), Gaps = 35/325 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKV-----------------SQIDVDRSVG 43
           +A++ GG SSE +VS+ S +   S ++   + +                 S+  +DR+  
Sbjct: 5   IAIVAGGDSSEHDVSMRSAEGIYSFIDKDKYTLYIVELTKEKWEALLPDGSRAQIDRN-D 63

Query: 44  LVLAH----LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
              +H    +KPD A+  +HG  GE+G++Q   ELL IPY+   +L SA++  K    Q 
Sbjct: 64  FSFSHDGQKVKPDFAYITIHGTPGENGILQGYFELLGIPYSTCDVLVSAMTFSKFTLNQY 123

Query: 100 VSSCGVPVCPSILVNRF----TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
           +   GV V  S+LVN+       D    I  P  IKP   GSS G+  +K  + I   L 
Sbjct: 124 LKGFGVRVAESMLVNKHHGISNEDVIEKIGLPCFIKPNASGSSFGVTKVKTAEQIQPAL- 182

Query: 156 QSSSWNHGDQLLIEQYVDGIELT--CGVMGDASL--DVTEIAVPKSDFYSYELKYSSLNS 211
              ++   D ++IE ++DGIEL   C    D S+   +TE+ V K++F+ Y  KY+    
Sbjct: 183 -EKAFAESDDVMIEAFMDGIELANGCYKTKDKSVVFPITEV-VSKNEFFDYNAKYNG-EV 239

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271
           T + PA++  ++   VQ+L    +  +GC+GI R D++      K+  LEIN  PGMT  
Sbjct: 240 TEITPARLSPELTDRVQKLTSAVYDILGCKGIVRVDYIITE-GEKINMLEINTTPGMTAT 298

Query: 272 SIFPEMAAYAGYSFRELLLWMVEDA 296
           S  P+    AG   +E++  ++ED+
Sbjct: 299 SFIPQQVRAAGIDIKEVMTDIIEDS 323


>gi|289579362|ref|YP_003477989.1| D-alanine/D-alanine ligase [Thermoanaerobacter italicus Ab9]
 gi|289529075|gb|ADD03427.1| D-alanine/D-alanine ligase [Thermoanaerobacter italicus Ab9]
          Length = 359

 Score =  153 bits (386), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 103/340 (30%), Positives = 173/340 (50%), Gaps = 55/340 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           +AVL GG S E EVSL S K+  + L+   +++  + + +     L              
Sbjct: 6   IAVLFGGQSGEHEVSLMSAKSIINNLDKDKYEIYMVGITKKGEWYLYRGDVEKIETGEWE 65

Query: 47  -------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81
                                         D+ F VLHG  GEDG +Q +LELL IPY  
Sbjct: 66  KEGIPATMGASTKYRGIITFGEGKNGFFPIDVVFPVLHGPNGEDGTIQGLLELLNIPYVG 125

Query: 82  SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--------QHLISPPYVIKPL 133
           + +L+SAL MDK+ +K++    G+P    ++V R  +          +HL  P +V KP 
Sbjct: 126 ANVLSSALCMDKVFTKRIFKEAGLPTPDFVVVYRKEIGDLETIKKKIEHLGYPCFV-KPA 184

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT--- 190
             GSS+GI  +  ++ +P  L  ++ ++   +LLIE+ ++  E+ C V+G+ + + +   
Sbjct: 185 NLGSSVGITKVHNEEELPGALKLAAKYDR--KLLIEKGIEAREIECSVLGNENPEASVAG 242

Query: 191 EIAVPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
           EI VP ++FY Y  KY     S  ++PA +P +  +E+++LA  A++A+  RG++R DFL
Sbjct: 243 EI-VPSNEFYDYNAKYFDGGKSLLLIPAPLPDEKMEEIRKLAIKAYKALDLRGMARVDFL 301

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
            D  +  V+  E+N  PG T +S++P++   +G S+  LL
Sbjct: 302 MDRNTGTVYLNEVNTIPGFTKISMYPKLWEASGKSYSALL 341


>gi|110803915|ref|YP_698634.1| D-alanine--D-alanine ligase [Clostridium perfringens SM101]
 gi|123047396|sp|Q0STC3|DDL_CLOPS RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|110684416|gb|ABG87786.1| D-alanine--D-alanine ligase [Clostridium perfringens SM101]
          Length = 301

 Score =  153 bits (386), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 96/297 (32%), Positives = 165/297 (55%), Gaps = 9/297 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGGISSERE+S+ SG +   AL+   ++   I ++    L+      D A   LHG
Sbjct: 3   VGVIMGGISSEREISIQSGNSVVHALDKDKYEAIPIVLNEKEDLIEKVKGIDFALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF-TMD 119
            FGEDG VQ++L+ L IP++  G L+SA+ MDK  +K++++   V     ++V+    +D
Sbjct: 63  KFGEDGTVQSVLKTLGIPFSGCGPLSSAICMDKDMTKRILAFGNVRTARWVMVSSVDEID 122

Query: 120 SQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            + +  +  P  IKP  GGSS+   +++  +++   +L++  ++   +++IE+Y+ G E+
Sbjct: 123 YEKIENLGYPVFIKPNNGGSSVATTLVESKEAVKDAVLEALKYDT--EVMIEEYIKGDEI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC ++    L V  I  PK  F+    KY    +   +  K+  D++KEV+++A   ++ 
Sbjct: 181 TCPIIDGKMLPVLAIK-PKGKFFDIASKYEDGGADEFI-VKLNEDLHKEVEKMALETYKL 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           + C   +R D L        + LE+N  PGMT  S+FP+ AA    SF ELL  ++E
Sbjct: 239 LKCDVYARVDMLV--RDNVPYVLEVNTLPGMTKNSLFPKSAAGINMSFEELLDTIIE 293


>gi|260587560|ref|ZP_05853473.1| D-alanine--D-alanine ligase [Blautia hansenii DSM 20583]
 gi|331084215|ref|ZP_08333321.1| hypothetical protein HMPREF0992_02245 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|260541825|gb|EEX22394.1| D-alanine--D-alanine ligase [Blautia hansenii DSM 20583]
 gi|330402070|gb|EGG81643.1| hypothetical protein HMPREF0992_02245 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 343

 Score =  153 bits (386), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 104/336 (30%), Positives = 166/336 (49%), Gaps = 48/336 (14%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKV------------------SQIDVDRSVGL 44
           VL GG S+EREVS++SG+    AL +   K                   ++ DVD++   
Sbjct: 5   VLAGGNSTEREVSIASGQGVCKALRERNHKAVLLDPYFGASQKEENLFPTEYDVDKAADA 64

Query: 45  ----------------------VLAHLK-PDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81
                                 VL   K  D+ F  LHG  GEDG VQ++L+L+ I YT 
Sbjct: 65  MREMSSKLEETMKTRKGFFGPNVLEICKEADIVFLALHGANGEDGKVQSVLDLMGIKYTG 124

Query: 82  SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ---HLISPPYVIKPLKGGSS 138
           SG L+S ++MDK  +K V  + GVP    I + +    SQ   + +  P ++KP  GGSS
Sbjct: 125 SGPLSSGMAMDKGITKMVFEAKGVPTPKGITLEKGKCSSQFADYGMGFPVIVKPCCGGSS 184

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD 198
           +G+ +          LL++ S+ +  ++++EQ++ G E +  V+   +  V EIA P   
Sbjct: 185 VGVCIANNQTEYQAALLEAFSYEN--EVVVEQFITGREFSVAVVDGKAYPVIEIA-PLQG 241

Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
           FY Y+ KY + +     PA +   + KE+Q+ A + ++A+  +  +R DFL D     ++
Sbjct: 242 FYDYKNKYQAGSCVETCPADLSSALTKEMQKYAEMGYKALNLQAYARLDFLMDD-EGNMY 300

Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            LE N  PGMTP S+ P+ A   G  + +L   ++E
Sbjct: 301 CLEANTLPGMTPTSLIPQEAKAIGMDYPQLCEKLIE 336


>gi|110798856|ref|YP_695965.1| D-alanine--D-alanine ligase [Clostridium perfringens ATCC 13124]
 gi|110673503|gb|ABG82490.1| D-alanine--D-alanine ligase [Clostridium perfringens ATCC 13124]
          Length = 301

 Score =  153 bits (386), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 96/297 (32%), Positives = 165/297 (55%), Gaps = 9/297 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGGISSERE+S+ SG +   AL+   ++   I ++    L+      D A   LHG
Sbjct: 3   VGVIMGGISSEREISIQSGNSVVHALDKDKYEAIPIVLNEKEDLIEKVKGIDFALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF-TMD 119
            FGEDG VQ++L+ L IP++  G L+SA+ MDK  +K++++   V     ++V+    +D
Sbjct: 63  KFGEDGTVQSVLKTLGIPFSGCGPLSSAICMDKDMTKRILAFGNVRTARWVMVSSVDEID 122

Query: 120 SQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            + +  +  P  IKP  GGSS+   +++  +++   +L++  ++   +++IE+Y+ G E+
Sbjct: 123 YEKIENLGYPVFIKPNNGGSSVATTLVESKEAVKDAVLEALKYDT--EVMIEEYIKGDEI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC ++    L V  I  PK  F+    KY    +   +  K+  D++KEV+++A   ++ 
Sbjct: 181 TCPIIDGKMLPVLAIK-PKGKFFDIASKYEDGGADEFI-VKLNEDLHKEVEKMALETYKL 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           + C   +R D L        + LE+N  PGMT  S+FP+ AA    SF ELL  ++E
Sbjct: 239 LKCDVYARVDMLVK--DNIPYVLEVNTLPGMTKNSLFPKSAAGINMSFEELLDTIIE 293


>gi|289624931|ref|ZP_06457885.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. aesculi
           str. NCPPB3681]
 gi|289650492|ref|ZP_06481835.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. aesculi
           str. 2250]
 gi|330867221|gb|EGH01930.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. aesculi
           str. 0893_23]
          Length = 363

 Score =  152 bits (385), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 99/339 (29%), Positives = 174/339 (51%), Gaps = 53/339 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------------------- 40
           +A++ GG SSE EVSL S +   +A++   + ++ I VD+                    
Sbjct: 5   VAIVFGGQSSEHEVSLQSARNVINAIDRERYTLTLIGVDKLGRWLRFDEADYLLNANDPA 64

Query: 41  -----SVGLVLAHL--------------KP----DLAFNVLHGNFGEDGLVQAILELLEI 77
                + G  L+ L              KP    D+ F ++HG FGEDG +Q +L +L +
Sbjct: 65  RIKLSASGKQLSLLPGSTGGQFVEVETGKPLAAIDVVFPLIHGAFGEDGALQGVLRMLAV 124

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM----DSQHLISPPYVIKPL 133
           P+  + +LASA  MDK  +K+++   G+ V P ++++R       D+   +  P  +KP 
Sbjct: 125 PFVGADVLASAACMDKDVTKRLLRDAGIAVAPFMVLSRAETLSFADAATQLGLPMFVKPA 184

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG--DASLDVTE 191
             GSS+G+  +  +      L     ++H  +LLIEQ + G E+ C V+G  DA + V  
Sbjct: 185 NQGSSVGVSKVSDEAGFVAALALGFEFDH--KLLIEQGIVGREVECAVLGNFDAQVSVCG 242

Query: 192 IAVPKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
             +   +FY+Y+ KY + +   + +PA+ P D+  +V+ +A  A++ +GC G+SR DF F
Sbjct: 243 EVIANDEFYAYDTKYLNGDQARIAIPAEFPADLSDQVREVALQAYKVLGCAGLSRVDF-F 301

Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
              +R +   E+N  PG T +S++P++   +G ++ EL+
Sbjct: 302 VTDTRDIIINEVNTLPGFTSISMYPKLWQASGLTYAELI 340


>gi|33598260|ref|NP_885903.1| D-alanine--D-alanine ligase [Bordetella parapertussis 12822]
 gi|39930857|sp|Q7W4B6|DDL_BORPA RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|33566818|emb|CAE39033.1| D-alanine--D-alanine ligase B [Bordetella parapertussis]
          Length = 316

 Score =  152 bits (385), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 115/308 (37%), Positives = 163/308 (52%), Gaps = 18/308 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VL GG S+EREVSL SGK    AL  AG      D        LA    +  F  LHG
Sbjct: 8   VGVLYGGRSAEREVSLMSGKGVHEALLSAGVDAHLFDTGERSLADLAAAGFERVFIALHG 67

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV------N 114
            +GEDG +Q  LELL IPYT SG LAS+LSMDK+ +K+V    G+P  P+  V       
Sbjct: 68  RYGEDGTLQGALELLGIPYTGSGPLASSLSMDKIMTKRVWLQHGLPT-PAFEVLGGSTEL 126

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
           R   D   L   P ++KP   GS++GI  +     +      ++ ++   ++L EQ++ G
Sbjct: 127 RLVPDRLGL---PLILKPPHEGSTVGITKVAGYSDMKAAYELAARFDA--EVLAEQFITG 181

Query: 175 IELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            ELT  V+G      +L V EI  P  + Y YE KY S ++ +  PA +P D+  +V  +
Sbjct: 182 RELTVAVLGSGAAARALPVIEIVAPGGN-YDYEHKYFSDDTQYFCPADLPADVAADVAAV 240

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A  A+ A+GC G  R DF+ D  +R  + LE+N  PGMT  S+ P  A   G S+ +L +
Sbjct: 241 AERAYAALGCEGWGRVDFILDRENRP-WLLEMNTSPGMTGHSLVPMAARAVGMSYADLCV 299

Query: 291 WMVEDASC 298
            ++  A+C
Sbjct: 300 AILAKAAC 307


>gi|228952937|ref|ZP_04115001.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228806742|gb|EEM53297.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
          Length = 304

 Score =  152 bits (385), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 97/305 (31%), Positives = 169/305 (55%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGG+SSE++VS+ +G    + L+   +++  I ++  V L+      D A   LHG
Sbjct: 3   IGVIMGGVSSEKQVSIMTGNEMIAHLDKNKYEIVPITLNEKVDLIEKAKDIDFALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---FT 117
            +GEDG VQ  LE L IPY+ S +L+S++ MDK  SK+++   GV     I + +     
Sbjct: 63  KYGEDGTVQGTLESLGIPYSGSNMLSSSICMDKNISKKILRYEGVETPDWIELTKMEDLN 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGI-IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
           +D    +  P V+KP  GGSS+G+ IV  K++ I + L     W+   +++IE+Y+ G E
Sbjct: 123 LDELDKLGFPLVVKPNSGGSSVGVKIVYNKNELISM-LETVFEWDS--EVVIEKYIKGDE 179

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +TC ++    L +  I    ++F+ Y  KY   ++   +  ++P++I + V + +   ++
Sbjct: 180 ITCSILDGKQLPIVSIR-HAAEFFDYNAKYDDTSTVEEV-IELPVEINERVNKASLACYK 237

Query: 237 AIGCRGISRSDFLF-DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           A+ C   +R D +  D +    + +EIN  PGMT  S+ P+ A  AG S+ ELL  ++E 
Sbjct: 238 ALKCSVYARVDMMVKDGIP---YVMEINTLPGMTQSSLLPKSAEAAGISYSELLDMIIET 294

Query: 296 ASCLR 300
           +  +R
Sbjct: 295 SLKVR 299


>gi|298488709|ref|ZP_07006738.1| D-alanine--D-alanine ligase [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
 gi|298156782|gb|EFH97873.1| D-alanine--D-alanine ligase [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
          Length = 363

 Score =  152 bits (385), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 99/339 (29%), Positives = 174/339 (51%), Gaps = 53/339 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------------------- 40
           +A++ GG SSE EVSL S +   +A++   + ++ I VD+                    
Sbjct: 5   VAIVFGGQSSEHEVSLQSARNVINAIDRERYTLTLIGVDKLGRWLRFDEGDYLLNANDPA 64

Query: 41  -----SVGLVLAHL--------------KP----DLAFNVLHGNFGEDGLVQAILELLEI 77
                + G  L+ L              KP    D+ F ++HG FGEDG +Q +L +L +
Sbjct: 65  RIKLSASGKQLSLLPGSTGGQFVEVETGKPLAAIDVVFPLIHGAFGEDGALQGVLRMLAV 124

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM----DSQHLISPPYVIKPL 133
           P+  + +LASA  MDK  +K+++   G+ V P ++++R       D+   +  P  +KP 
Sbjct: 125 PFVGADVLASAACMDKDVTKRLLRDAGIAVAPFMVLSRAETLSFADAATQLGLPMFVKPA 184

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG--DASLDVTE 191
             GSS+G+  +  +      L     ++H  +LLIEQ + G E+ C V+G  DA + V  
Sbjct: 185 NQGSSVGVSKVSDEAGFVAALALGFEFDH--KLLIEQGIVGREVECAVLGNFDAQVSVCG 242

Query: 192 IAVPKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
             +   +FY+Y+ KY + +   + +PA+ P D+  +V+ +A  A++ +GC G+SR DF F
Sbjct: 243 EVIANDEFYAYDTKYLNGDQARIAIPAEFPADLSDQVREVALQAYKVLGCAGLSRVDF-F 301

Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
              +R +   E+N  PG T +S++P++   +G ++ EL+
Sbjct: 302 VTDTRDIIINEVNTLPGFTSISMYPKLWQASGLTYAELI 340


>gi|24214759|ref|NP_712240.1| D-alanine--D-alanine ligase [Leptospira interrogans serovar Lai
           str. 56601]
 gi|39930898|sp|Q8F4I2|DDL_LEPIN RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|24195760|gb|AAN49258.1|AE011378_5 D-alanine--D-alanine ligase [Leptospira interrogans serovar Lai
           str. 56601]
          Length = 351

 Score =  152 bits (385), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 104/345 (30%), Positives = 162/345 (46%), Gaps = 56/345 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           +AV  GG S+E  +S+ +G      L   G  V  I + +  G V+              
Sbjct: 4   IAVFFGGSSTEHSISILTGCFICKTLHTMGHSVKPILLTKDGGWVVPSEYRMSIPFEVSN 63

Query: 49  -----------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
                                  L  D+ F  LHG  GEDG +Q  LE+L IPYT SG+L
Sbjct: 64  SPDLFQEEFQKRYGVSRTNQIFSLDADIVFLGLHGGQGEDGTIQGFLEILGIPYTGSGVL 123

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRF--------TMDSQHLISPPYVIKPLKGGS 137
           ASA++MDK R+ Q+    G  V P   +++          +     +  P  +KP++GGS
Sbjct: 124 ASAIAMDKTRANQIFLQSGQKVAPFFEIDKLEYLNSTDAVITKLETLGFPQFLKPVEGGS 183

Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM--------GDASLDV 189
           S+ +  I   + +   L  +  +    +++ + ++ GIE++CGV+           +L  
Sbjct: 184 SVSVYKITNREQLKEKL--ALIFESDSKVMSQSFLTGIEVSCGVLERYRDGKFKKIALPA 241

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
           TEI VP  +F+ +E KY    S  + PA+I     K VQ LA  AH+++GC G SR+DF+
Sbjct: 242 TEI-VPGGEFFDFESKYKQGGSHEITPARISEQEMKRVQELAIAAHRSLGCSGYSRTDFI 300

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
              ++ +   LE N  PGMT  S+ P+ A  AG S  E+   ++E
Sbjct: 301 I--VNGEPHILETNTLPGMTETSLIPQQAKAAGISMEEVFSDLIE 343


>gi|300309680|ref|YP_003773772.1| D-alanine-D-alanine ligase B protein [Herbaspirillum seropedicae
           SmR1]
 gi|300072465|gb|ADJ61864.1| D-alanine-D-alanine ligase B protein [Herbaspirillum seropedicae
           SmR1]
          Length = 334

 Score =  152 bits (385), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 106/304 (34%), Positives = 161/304 (52%), Gaps = 23/304 (7%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-VDRSVGLVLAHLKPDLAFNVLH 59
           + VL GG S+EREVS+ SG     AL   G      D  +RS+G + A  + D  F  LH
Sbjct: 13  VGVLFGGRSAEREVSMMSGNGVLQALRSKGVDAHPFDPAERSLGELQAE-QFDRVFIALH 71

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFT 117
           G +GEDG +Q  LE + +PYT  G+++S+++MDK+ +K++  S G+P  P  L    + T
Sbjct: 72  GRYGEDGTLQGALEQMGLPYTGPGVMSSSIAMDKVMTKRIWLSHGLPT-PRFLTLDAQAT 130

Query: 118 MDSQHLISP-----PYVIKPLKGGSSLGIIVIK--KDQSIPLDLLQSSSWNHGDQLLIEQ 170
              Q  + P     P ++K    GS++GI  +    D     DL       +   +L E+
Sbjct: 131 TREQLRLVPDTLGLPLMLKAPHEGSTIGIAKVNGYSDMQEGFDLCA----RYDKVVLAEE 186

Query: 171 YVDGIELTCGVMGDAS----LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE 226
           ++ G ELT  V+G  S    L V EI  P+ + Y Y+ KY + ++ ++ PA +  ++ + 
Sbjct: 187 FIRGRELTVPVLGTGSAARALPVIEIRAPEGN-YDYQNKYFTDDTKYLCPAPLDEELTRH 245

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKV--FWLEINVQPGMTPVSIFPEMAAYAGYS 284
           +Q LA  A  A+GCRG SR DF+   +  K   + LEIN  PGMT  S+ P  A   G S
Sbjct: 246 LQNLAVQAFNALGCRGWSRVDFMLREVDGKAEPYLLEINTSPGMTGHSLVPMAAKAVGMS 305

Query: 285 FREL 288
           + +L
Sbjct: 306 YEDL 309


>gi|226324322|ref|ZP_03799840.1| hypothetical protein COPCOM_02103 [Coprococcus comes ATCC 27758]
 gi|225206770|gb|EEG89124.1| hypothetical protein COPCOM_02103 [Coprococcus comes ATCC 27758]
          Length = 320

 Score =  152 bits (385), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 84/263 (31%), Positives = 143/263 (54%), Gaps = 22/263 (8%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+AF VLHG +GEDG +Q + EL ++PY    + AS+  MDK+ +K+V  S G+P   S+
Sbjct: 55  DVAFPVLHGLYGEDGTIQGLFELAQLPYVGCRVFASSACMDKIFAKKVFESAGIPQVKSV 114

Query: 112 LVNRFT----------MDSQHLISP--------PYVIKPLKGGSSLGIIVIKKDQSIPLD 153
            V +            M+    +          P  IK  + GSS+G     K++ +   
Sbjct: 115 YVKKRNDGKLVVVEKNMEETKEVEASIMKELGMPCFIKASRSGSSVGCYRCDKEEDLMAK 174

Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA--VPKSDFYSYELKYSSLNS 211
           L +++ ++    +++E+ VD IEL   V+G+  + V+ +   +P  +FY++E KY    S
Sbjct: 175 LEEAAKYDT--HIVVEECVDCIELETAVLGNDDIIVSRVGQIMPHGEFYTFESKYEDAES 232

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271
              +PAK+  +I +++++ A  A +AI   G+SR DF  D  +  V+  EIN  PG T +
Sbjct: 233 KTCIPAKVDEEIQEQIRKYAVRAFKAIDGHGLSRVDFFLDKKTNHVYLNEINTLPGFTSI 292

Query: 272 SIFPEMAAYAGYSFRELLLWMVE 294
           S++P++    GYS+ ELL  ++E
Sbjct: 293 SMYPQLMEDYGYSYSELLDKLIE 315


>gi|219668748|ref|YP_002459183.1| D-alanyl-alanine synthetase A [Desulfitobacterium hafniense DCB-2]
 gi|219539008|gb|ACL20747.1| D-alanine/D-alanine ligase [Desulfitobacterium hafniense DCB-2]
          Length = 361

 Score =  152 bits (385), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 104/341 (30%), Positives = 166/341 (48%), Gaps = 52/341 (15%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS--------------------V 42
           +L GG S E EVSL+S  +   A++   +++  I + ++                    +
Sbjct: 8   ILFGGQSGEHEVSLNSASSVLKAIDQEKYEIETIGIAKNGQWHWGIRPEQWQQDPALEGI 67

Query: 43  GLVLAH--------------LKPD----LAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84
            ++LAH              L  D    L F VLHG FGEDG +Q + E+  IPY  SG+
Sbjct: 68  PVILAHDPTNPRFIALDGSSLPQDGKFALIFPVLHGPFGEDGTIQGLFEMANIPYAGSGV 127

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKG 135
           L SAL MDK R K V +  G+P  P I V R  +           +H +  P  +KP   
Sbjct: 128 LGSALGMDKDRMKAVFTEAGLPQAPYITVLRTMLQKPMEQLLDNIEHSLGYPCFVKPANL 187

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG--DASLDVTEIA 193
           GSS+GI   +  + +   L  ++ ++   +L++EQ + G E+   V+G  DA   +    
Sbjct: 188 GSSVGISKARNREELIQALQLAAEYDR--KLVVEQNIVGREIELSVLGNEDAQASIPGEI 245

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
           +P  DFY YE KY    S  V+PA +  ++ + +Q  A  A +A+   G+SR DF F   
Sbjct: 246 LPAKDFYDYEAKYIDTGSQLVIPAPLAPEVVRSLQEKAVAAFKAVEACGLSRVDF-FVTE 304

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             +++  EIN  PG T +S++P++   +G  + EL+  ++E
Sbjct: 305 GGQIYINEINTMPGFTQISMYPKLWEASGIPYTELITRLIE 345


>gi|126643341|ref|YP_001086325.1| D-alanine--D-alanine ligase [Acinetobacter baumannii ATCC 17978]
          Length = 286

 Score =  152 bits (385), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 99/287 (34%), Positives = 154/287 (53%), Gaps = 14/287 (4%)

Query: 14  VSLSSGKACASALEDAGFKVSQID-VDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAIL 72
           +SL SG+A   AL  +G +    D  DRSV  ++ +   D AF VLHG  GEDG +Q +L
Sbjct: 1   MSLDSGQAVLDALLRSGVQAEAFDPQDRSVTELVNY---DRAFIVLHGRGGEDGQIQGVL 57

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP---PYV 129
           E L IPYT +G+  SA+ MDK+++KQ+     +P  P  ++ + T D   +I+    P +
Sbjct: 58  EWLNIPYTGTGVQGSAIGMDKVKTKQIWQGSDLPTAPYRIITKET-DLDSVIAELGLPVI 116

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           IKP+  GSS+G+  ++K +     + +++   H   ++ E+++ G E T   +    L V
Sbjct: 117 IKPVHEGSSVGMSKVEKAEDFAAAIEKAT--QHDAVVMAEKWITGREFTISFLNGQPLPV 174

Query: 190 TEIAVPKS-DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
             +  P    FY YE KY   +  + +P  +     K++Q L   A QA+G  G  R D 
Sbjct: 175 IRLQPPADVAFYDYEAKYQRNDVEYGIPCGLSETEEKKLQALCLRAFQAVGAEGWGRIDA 234

Query: 249 LFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           + D   +  FW LE+N  PGMT  S+ P+ A   GYSF EL + ++E
Sbjct: 235 MQD--EQGNFWLLEVNTVPGMTSHSLVPKAAKAVGYSFDELCVAILE 279


>gi|121635442|ref|YP_975687.1| D-alanine--D-alanine ligase [Neisseria meningitidis FAM18]
 gi|166198495|sp|A1KVL1|DDL_NEIMF RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|120867148|emb|CAM10915.1| D-alanine--D-alanine ligase B [Neisseria meningitidis FAM18]
 gi|325132970|gb|EGC55647.1| D-alanine--D-alanine ligase B [Neisseria meningitidis M6190]
 gi|325134891|gb|EGC57524.1| D-alanine--D-alanine ligase B [Neisseria meningitidis M13399]
 gi|325138958|gb|EGC61508.1| D-alanine--D-alanine ligase B [Neisseria meningitidis ES14902]
          Length = 304

 Score =  152 bits (385), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 108/302 (35%), Positives = 161/302 (53%), Gaps = 13/302 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD---LAFNV 57
           +AVLMGG SSERE+SL SG A  +AL+  G      D   +    L+ LK      AFN+
Sbjct: 7   VAVLMGGFSSEREISLDSGTAILNALKSKGIDAYAFDPKETP---LSELKAQGFQTAFNI 63

Query: 58  LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-SILVNRF 116
           LHG +GEDG VQ  LELL IPYT SG+ ASA+ MDK R K +  + G+PV   ++L +  
Sbjct: 64  LHGTYGEDGAVQGALELLGIPYTGSGVAASAIGMDKYRCKLIWQALGLPVPEFAVLHDDT 123

Query: 117 TMDS-QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175
             D+ +  +  P  +KP        + V+K      L  +     +   +++ E+++ G 
Sbjct: 124 DFDAVEEKLGLPMFVKP--AAEGSSVGVVKVKGKGRLKSVYEELKHLQGEIIAERFIGGG 181

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR-LAFLA 234
           E +C V+    L    I +P ++FY YE KY+  ++ +  P++   +  + + R LA   
Sbjct: 182 EYSCPVLNGKGLPGIHI-IPATEFYDYEAKYNRNDTIYQCPSEDLTEAEESLMRELAVRG 240

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            QAIG     R DFL D    K++ LEIN  PGMT  S+ P+ AA  G  F +L + +++
Sbjct: 241 AQAIGAESCVRVDFLKD-TDGKLYLLEINTLPGMTSHSLVPKSAAVTGVGFADLCIEILK 299

Query: 295 DA 296
            A
Sbjct: 300 TA 301


>gi|258546155|ref|ZP_05706389.1| D-alanine--D-alanine ligase B [Cardiobacterium hominis ATCC 15826]
 gi|258518580|gb|EEV87439.1| D-alanine--D-alanine ligase B [Cardiobacterium hominis ATCC 15826]
          Length = 306

 Score =  152 bits (385), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 109/294 (37%), Positives = 158/294 (53%), Gaps = 8/294 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-DRSVGLVLAHLKPDLAFNVLH 59
           +AVL GG SSEREVSLSSG A   AL  +G     +D  D      L       AF VLH
Sbjct: 8   VAVLYGGTSSEREVSLSSGAAVHEALVTSGVDAHLLDTRDHQALFNLKGQGFARAFIVLH 67

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G  GEDG VQAIL+   IPYT SG+LA AL+MDK+ +K+V  + G+PV P ++++  T  
Sbjct: 68  GRGGEDGQVQAILDWQGIPYTGSGVLACALAMDKVLTKRVWQTFGLPVKPDLVIDAATTY 127

Query: 120 SQ---HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
           ++    L    + IKP   GSS+G+  +     +     ++      ++++ E +V G E
Sbjct: 128 AELVAALGGSHFAIKPALEGSSVGVSRVGNQAELEAAYQKAGGIR--EKIMAEPWVTGRE 185

Query: 177 LTCGVMGDASLDVTEI-AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
           LT  V+G   L   E+ A  +  FY Y+ KY + ++ +  P  I   +  +++ L   A 
Sbjct: 186 LTYPVIGGRVLPGIEVTASAEHLFYDYDAKYLAEDTRYRCPPPIDAALDGQLRELTRRAF 245

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
            AIG +G +R DF+ D  +R  + LEIN+ PGMT  S+ P  A   G  F  L+
Sbjct: 246 DAIGAKGWARVDFILDGDNRP-WILEINMVPGMTSHSLVPLAAREDGMDFVALV 298


>gi|168215133|ref|ZP_02640758.1| D-alanine--D-alanine ligase [Clostridium perfringens CPE str.
           F4969]
 gi|170713457|gb|EDT25639.1| D-alanine--D-alanine ligase [Clostridium perfringens CPE str.
           F4969]
          Length = 301

 Score =  152 bits (385), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 96/297 (32%), Positives = 165/297 (55%), Gaps = 9/297 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGGISSERE+S+ SG +   AL+   ++   I ++    L+      D A   LHG
Sbjct: 3   VGVIMGGISSEREISIQSGNSVVHALDKDKYEAIPIVLNEKEDLIEKVKGIDFALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF-TMD 119
            FGEDG VQ++L+ L IP++  G L+SA+ MDK  +K++++   V     ++V+    +D
Sbjct: 63  KFGEDGTVQSVLKTLGIPFSGCGPLSSAICMDKDMTKRILAFGNVRTARWVMVSSVDEID 122

Query: 120 SQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            + +  +  P  IKP  GGSS+   +++  +++   +L++  ++   +++IE+Y+ G E+
Sbjct: 123 YEKIENLCYPVFIKPNNGGSSVATTLVESKEAVKDAVLEALKYDT--EVMIEEYIKGDEI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC ++    L V  I  PK  F+    KY    +   +  K+  D++KEV+++A   ++ 
Sbjct: 181 TCPIIDGKMLPVLAIK-PKGKFFDIASKYEDGGADEFI-VKLNEDLHKEVEKMALETYKL 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           + C   +R D L        + LE+N  PGMT  S+FP+ AA    SF ELL  ++E
Sbjct: 239 LKCDVYARVDMLVK--DNIPYVLEVNTLPGMTKNSLFPKSAAGINMSFEELLDTIIE 293


>gi|71733971|ref|YP_276049.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71554524|gb|AAZ33735.1| D-alanine--D-alanine ligase A [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|320325604|gb|EFW81666.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. glycinea
           str. B076]
 gi|320327112|gb|EFW83126.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. glycinea
           str. race 4]
 gi|330879137|gb|EGH13286.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. glycinea
           str. race 4]
 gi|330989504|gb|EGH87607.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. lachrymans
           str. M301315]
          Length = 363

 Score =  152 bits (384), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 99/339 (29%), Positives = 174/339 (51%), Gaps = 53/339 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------------------- 40
           +A++ GG SSE EVSL S +   +A++   + ++ I VD+                    
Sbjct: 5   VAIVFGGQSSEHEVSLQSARNVINAIDRERYTLTLIGVDKLGRWLRFDEADYLLNANDPA 64

Query: 41  -----SVGLVLAHL--------------KP----DLAFNVLHGNFGEDGLVQAILELLEI 77
                + G  L+ L              KP    D+ F ++HG FGEDG +Q +L +L +
Sbjct: 65  RIKLSASGKQLSLLPGSTGGQFVEVETGKPLAAIDVVFPLIHGAFGEDGALQGVLRMLAV 124

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM----DSQHLISPPYVIKPL 133
           P+  + +LASA  MDK  +K+++   G+ V P ++++R       D+   +  P  +KP 
Sbjct: 125 PFVGADVLASAACMDKDVTKRLLRDAGIAVAPFMVLSRGETLSFADAATQLGLPMFVKPA 184

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG--DASLDVTE 191
             GSS+G+  +  +      L     ++H  +LLIEQ + G E+ C V+G  DA + V  
Sbjct: 185 NQGSSVGVSKVSDEAGFVAALALGFEFDH--KLLIEQGIVGREVECAVLGNFDAQVSVCG 242

Query: 192 IAVPKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
             +   +FY+Y+ KY + +   + +PA+ P D+  +V+ +A  A++ +GC G+SR DF F
Sbjct: 243 EVIANDEFYAYDTKYLNGDQARIAIPAEFPADLSDQVREVALQAYKVLGCAGLSRVDF-F 301

Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
              +R +   E+N  PG T +S++P++   +G ++ EL+
Sbjct: 302 VTDTRDIIINEVNTLPGFTSISMYPKLWQASGLTYAELI 340


>gi|330889540|gb|EGH22201.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. mori str.
           301020]
          Length = 363

 Score =  152 bits (384), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 99/339 (29%), Positives = 174/339 (51%), Gaps = 53/339 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------------------- 40
           +A++ GG SSE EVSL S +   +A++   + ++ I VD+                    
Sbjct: 5   VAIVFGGQSSEHEVSLQSARNVINAIDRERYTLTLIGVDKLGRWLRFDEADYLLNANDPA 64

Query: 41  -----SVGLVLAHL--------------KP----DLAFNVLHGNFGEDGLVQAILELLEI 77
                + G  L+ L              KP    D+ F ++HG FGEDG +Q +L +L +
Sbjct: 65  RIKLSASGKQLSLLPGSTGGQFVEVETGKPLAAIDVVFPLIHGAFGEDGALQGVLRMLAV 124

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM----DSQHLISPPYVIKPL 133
           P+  + +LASA  MDK  +K+++   G+ V P ++++R       D+   +  P  +KP 
Sbjct: 125 PFVGADVLASAACMDKDVTKRLLRDAGIAVAPFMVLSRGETLSFADAATQLGLPMFVKPA 184

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG--DASLDVTE 191
             GSS+G+  +  +      L     ++H  +LLIEQ + G E+ C V+G  DA + V  
Sbjct: 185 NQGSSVGVSKVSDEAGFVAALALGFEFDH--KLLIEQGIVGREVECAVLGNFDAQVSVCG 242

Query: 192 IAVPKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
             +   +FY+Y+ KY + +   + +PA+ P D+  +V+ +A  A++ +GC G+SR DF F
Sbjct: 243 EVIANDEFYAYDTKYLNGDQARIAIPAEFPADLSDQVREVALQAYKVLGCAGLSRVDF-F 301

Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
              +R +   E+N  PG T +S++P++   +G ++ EL+
Sbjct: 302 VTDTRDIIINEVNTLPGFTSISMYPKLWQASGLTYAELI 340


>gi|124515885|gb|EAY57394.1| D-alanine--D-alanine ligase [Leptospirillum rubarum]
          Length = 303

 Score =  152 bits (384), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 100/297 (33%), Positives = 151/297 (50%), Gaps = 10/297 (3%)

Query: 5   MGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGE 64
           MGG S E  VS  SGKA   AL   G++   ++    +   L    PD+ F   HG  GE
Sbjct: 1   MGGDSPEAAVSRMSGKAVLEALRSRGYEAIPVEAGPDLFHTLLRTSPDVCFLATHGGHGE 60

Query: 65  DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFTMDSQ 121
           +G +Q  LE+L IPYT SG+L SAL M K  S+ +    G+ V  ++ +    R T D +
Sbjct: 61  NGALQGCLEVLGIPYTGSGVLGSALGMSKSASRALFRQGGLDVPETVAIESGERLTPD-K 119

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
                P+++KP   GSS+G+  +     +P  LL++    H  ++L+E ++ G E+   +
Sbjct: 120 IPFPLPFMVKPESAGSSIGVTRVDHFPDLPQALLEAE--KHSSRILVEPFLPGREVQSAI 177

Query: 182 MGDASLDVTEIAVPKSD--FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
           +    L   EI VP S   FY+Y  KY    S H+ PA +  D+   ++     A   + 
Sbjct: 178 LDGRYLGAIEI-VPDSSEPFYTYASKYQKGKSRHIFPAPLTSDVASRLEEATLRAFGLLE 236

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            RG++R D L  P  R V  LE+N  PG+T  S+ PE+A   G SF +L+  ++  A
Sbjct: 237 LRGVARMDTLVLPDGR-VVVLEMNTLPGLTETSLVPEIARGCGLSFEDLVETILSSA 292


>gi|108798897|ref|YP_639094.1| D-alanyl-alanine synthetase A [Mycobacterium sp. MCS]
 gi|119868012|ref|YP_937964.1| D-alanyl-alanine synthetase A [Mycobacterium sp. KMS]
 gi|123179010|sp|Q1BAP6|DDL_MYCSS RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|167012329|sp|A1UEB6|DDL_MYCSK RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|108769316|gb|ABG08038.1| D-alanine--D-alanine ligase [Mycobacterium sp. MCS]
 gi|119694101|gb|ABL91174.1| D-alanine--D-alanine ligase [Mycobacterium sp. KMS]
          Length = 371

 Score =  152 bits (384), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 102/299 (34%), Positives = 161/299 (53%), Gaps = 22/299 (7%)

Query: 13  EVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAI 71
           EVS  SG A A    D G +   + +   + G VLA +  D+ F VLHG +GEDG +Q +
Sbjct: 72  EVSAESGTALALP-ADPGRRGELVSLSPAAAGEVLAAV--DVVFPVLHGPYGEDGTIQGL 128

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN----RFTMDSQHLISPP 127
           LEL  +PY  +G+LASA  MDK  +K+++ + G+PV   +++       T+D +  +  P
Sbjct: 129 LELAGVPYVGAGVLASAAGMDKEFTKKLLVAEGLPVGDHVVLRPGRANVTLDERERLGLP 188

Query: 128 YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG--DA 185
             +KP +GGSS+G+  +     +P  +   ++  H  ++++E  + G EL CGV+   D 
Sbjct: 189 VFVKPARGGSSIGVSRVSDWAELPAAI--EAARRHDPKVIVEAGIAGRELECGVLEYPDG 246

Query: 186 SLD---VTEIAVP-----KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
            +D   + EI V      +  FY +  KY    +   +PAK+  D+  E++RLA  A +A
Sbjct: 247 RVDASTIGEIRVAGVRGREDGFYDFATKYLDDGAELDVPAKVEDDVADEIRRLAIRAFRA 306

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           I C+G++R DF        V   EIN  PG T +S++P M A +G  +  LL  MV+ A
Sbjct: 307 IDCQGLARVDFFLTDDGPVVN--EINTMPGFTTISMYPRMWAASGVDYPTLLAAMVDTA 363


>gi|262039022|ref|ZP_06012356.1| D-alanine--D-alanine ligase [Leptotrichia goodfellowii F0264]
 gi|261746932|gb|EEY34437.1| D-alanine--D-alanine ligase [Leptotrichia goodfellowii F0264]
          Length = 309

 Score =  152 bits (384), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 94/303 (31%), Positives = 164/303 (54%), Gaps = 17/303 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI--DVDRSVGLVLAHLKPDLAFNVL 58
           + V+ GG+S+ER+VSL++G+     L    ++V  I  + +  V   L  L  D  +  L
Sbjct: 7   VGVISGGVSTERDVSLNTGREIVKNLNRGKYEVFDIVINSENEVFEKLKDLNLDFVYIAL 66

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--- 115
           HG FGEDG +QAILE L I Y   G+++S++ MDK  +K++V++ GV V   + V R   
Sbjct: 67  HGAFGEDGRIQAILESLGIAYGGPGVMSSSVCMDKELTKKIVATYGVRVAKGLSVRRGET 126

Query: 116 --FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI--PLDLLQSSSWNHGDQLLIEQY 171
             F   S+ L     ++KP  GGSS+G+  ++ ++ +   L L+    +    + L+E+ 
Sbjct: 127 ADFKTISEKL-GKRIIVKPNSGGSSIGVSFVESEEQLQEALKLV----FTMDKEALVEEV 181

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E++  V+        +I     D++ Y+ KYS   +   +  +   +I +E+ + A
Sbjct: 182 LSGTEISVPVIDGKVYPTLKIEAVAGDYFDYKSKYSDGGAREFV-FEFEKEIQQEIDKFA 240

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           + ++ A+ C G SR DF+   +  K +++E+N  PGMT  S+ P+  A  GYS+ E L  
Sbjct: 241 YDSYYAMKCEGFSRVDFMV--VGDKPYFMEVNTLPGMTAASLLPKSTASKGYSYSETLDL 298

Query: 292 MVE 294
           ++E
Sbjct: 299 LIE 301


>gi|312879691|ref|ZP_07739491.1| D-alanine--D-alanine ligase [Aminomonas paucivorans DSM 12260]
 gi|310782982|gb|EFQ23380.1| D-alanine--D-alanine ligase [Aminomonas paucivorans DSM 12260]
          Length = 314

 Score =  152 bits (384), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 109/302 (36%), Positives = 154/302 (50%), Gaps = 30/302 (9%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLA--HLKPDLAFNVLHG 60
           V  GG S ER VSL SGKA A AL  AG +V   D+   +G+V A      DL F  LHG
Sbjct: 5   VACGGDSPERAVSLRSGKAVAEALAVAGHQVFLEDLPTCLGVVEAARDRGADLVFVALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR----- 115
            +GEDG +QA+LE   IPYT SG  +   +MDK  ++ V    G+PV P  +  R     
Sbjct: 65  GWGEDGRLQAVLEAHGIPYTGSGPESCMAAMDKELTRAVFLDRGLPVPPGKVYEREDAAL 124

Query: 116 ------FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS--SWNHGDQLL 167
                    +  HL      +KP   GS++G+ ++ +    P DL ++   +  + D+L+
Sbjct: 125 PDLESLMAREGGHL-----ALKPCCCGSTVGVSLVHR----PEDLREARDLALKYDDRLV 175

Query: 168 IEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            E+++ G ELT  V  +     +L   EI  P   FY Y  KY+S  + ++ PA +   +
Sbjct: 176 AERFIPGRELTVAVFEEGGRPRALPAIEIR-PHEGFYDYRNKYTSGATEYLCPAPLEEAL 234

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283
              V  LA  AH+A+GCR  SR DF       + F LE+N  PGMT  S+ P+  A  G+
Sbjct: 235 AARVGSLAEAAHRALGCRVYSRVDFRLSEEG-EPFLLEVNTAPGMTGTSLVPKAGAAVGW 293

Query: 284 SF 285
           SF
Sbjct: 294 SF 295


>gi|329901114|ref|ZP_08272730.1| D-alanine-D-alanine ligase [Oxalobacteraceae bacterium IMCC9480]
 gi|327549213|gb|EGF33801.1| D-alanine-D-alanine ligase [Oxalobacteraceae bacterium IMCC9480]
          Length = 322

 Score =  152 bits (384), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 106/311 (34%), Positives = 163/311 (52%), Gaps = 24/311 (7%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-VDRSVGLVLAHLKPDLAFNVLH 59
           + VL+GG S+EREVSL SG    +AL   G      D  +RS+   LA  + D  F  LH
Sbjct: 11  VGVLLGGRSAEREVSLMSGNGVLAALRSKGIDAHPFDPAERSLA-ELATEQFDRVFIALH 69

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G FGEDG +Q  LELL IPYT SG++ASA+ +DK+ +K++  S  +P  P  LV    +D
Sbjct: 70  GRFGEDGTLQGALELLGIPYTGSGVMASAIGIDKVMTKRIWLSHDLPT-PRFLV----LD 124

Query: 120 SQ----------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
           +Q            +  P ++K    GS++GI  +  D  +       + ++    +L E
Sbjct: 125 AQTPADVLDEVPEELGLPLMLKAPHEGSTIGIAKVIVDADMHTGFALCAQYD--SVVLAE 182

Query: 170 QYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
           +++ G E+T  V+G      +L + EI  P+ + Y YE KY S ++ ++ PA +  ++  
Sbjct: 183 EFISGREITIPVLGSGHGARALPIVEIRAPEGN-YDYEHKYFSDDTVYLCPAPLADEVTA 241

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285
            +Q +A  A  A+GC G  R D +        F LE+N  PGMT  S+ P  A  AG S+
Sbjct: 242 TLQDIAVRAFNAVGCTGWGRVDIMLRAGDDAPFLLEVNTSPGMTSHSLVPMAAKAAGISY 301

Query: 286 RELLLWMVEDA 296
            +L + ++  A
Sbjct: 302 EDLCVEILSTA 312


>gi|271970545|ref|YP_003344741.1| D-alanine--D-alanine ligase [Streptosporangium roseum DSM 43021]
 gi|270513720|gb|ACZ91998.1| D-alanine--D-alanine ligase [Streptosporangium roseum DSM 43021]
          Length = 318

 Score =  152 bits (384), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 102/310 (32%), Positives = 157/310 (50%), Gaps = 18/310 (5%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62
           VL GG+S EREVSL SG+  +  L  AG  V   D D S+   +    PD  F  LHG  
Sbjct: 9   VLAGGLSYEREVSLRSGRRVSEVLRTAGIVVETRDTDASLVPSILADPPDAVFVTLHGGA 68

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-- 120
           GEDG ++++LELL +PY  +G  A  ++ DK  +K VV S G+    S+ + + T     
Sbjct: 69  GEDGAIRSVLELLSVPYVGAGPDACRVAFDKPTAKTVVRSVGLRTPDSVTLPKETFHDLG 128

Query: 121 --------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                      +  P  +KP +GGS+LG  +++  + +P  ++    + +GD  LIE+ +
Sbjct: 129 ASTVLTRIVERLGLPLFVKPSRGGSALGASIVRAAEDLPAAMV--GCFAYGDTALIERCI 186

Query: 173 DGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           +G+E+   V+    G  +L   EI VP    Y Y  +Y++ ++    PA++  +      
Sbjct: 187 EGVEVAVSVVDLGGGPMALPPVEI-VPDKGVYDYAARYTAGHTEFFAPARLSPEAAAACA 245

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
            +A  AH A+G R ISR+D + D      F LE+NV PGMT  S+ P     AG     L
Sbjct: 246 EMAVTAHTALGLRDISRTDLIVDGDGLPHF-LEVNVAPGMTETSLLPMAVEAAGDDLGTL 304

Query: 289 LLWMVEDASC 298
              ++E A+ 
Sbjct: 305 CRVLLEQAAA 314


>gi|325128840|gb|EGC51699.1| D-alanine--D-alanine ligase B [Neisseria meningitidis N1568]
          Length = 304

 Score =  152 bits (384), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 108/302 (35%), Positives = 161/302 (53%), Gaps = 13/302 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD---LAFNV 57
           +AVLMGG SSERE+SL SG A  +AL+  G      D   +    L+ LK      AFN+
Sbjct: 7   VAVLMGGFSSEREISLDSGTAILNALKSKGIDAYAFDPKETP---LSELKAQGFQTAFNI 63

Query: 58  LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-SILVNRF 116
           LHG +GEDG VQ  LELL IPYT SG+ ASA+ MDK R K +  + G+PV   ++L +  
Sbjct: 64  LHGTYGEDGAVQGALELLGIPYTGSGVAASAIGMDKYRCKLIWQALGLPVPEFAVLHDDT 123

Query: 117 TMDS-QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175
             D+ +  +  P  +KP        + V+K      L  +     +   +++ E+++ G 
Sbjct: 124 DFDAVEEKLGLPMFVKP--AAEGSSVGVVKVKGKGRLKSVYEELKHLQGEIIAERFIGGG 181

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR-LAFLA 234
           E +C V+    L    I +P ++FY YE KY+  ++ +  P++   +  + + R LA   
Sbjct: 182 EYSCPVLNGKGLPGIHI-IPATEFYDYEAKYNRDDTIYQCPSEDLTEAEESLMRELAVRG 240

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            QAIG     R DFL D    K++ LEIN  PGMT  S+ P+ AA  G  F +L + +++
Sbjct: 241 AQAIGAESCVRVDFLKD-TDGKLYLLEINTLPGMTSHSLVPKSAAVTGVGFADLCIEILK 299

Query: 295 DA 296
            A
Sbjct: 300 TA 301


>gi|156741078|ref|YP_001431207.1| D-alanine--D-alanine ligase [Roseiflexus castenholzii DSM 13941]
 gi|156232406|gb|ABU57189.1| D-alanine--D-alanine ligase [Roseiflexus castenholzii DSM 13941]
          Length = 371

 Score =  152 bits (384), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 104/355 (29%), Positives = 169/355 (47%), Gaps = 63/355 (17%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---------LAHLKP 51
           + VL GG S E EVSL S +A    L+   + V+ I + +    +         LA   P
Sbjct: 7   VGVLFGGQSGEHEVSLVSARAVMDGLDPERYDVTPIGITKHGRWIIAPDAHTRLLAQADP 66

Query: 52  -----------------------------------------DLAFNVLHGNFGEDGLVQA 70
                                                    D+ F VLHG  GEDG VQ 
Sbjct: 67  AKLPGGSSAGAADAADGVDDVETTDPLTLMVAGEQSPLKTLDVVFPVLHGPMGEDGTVQG 126

Query: 71  ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------Q 121
           +LEL+EIPY   G++ASA+ MDK  +K   S  G+PV P +L+ R   +          +
Sbjct: 127 LLELMEIPYVGCGVMASAVGMDKAMTKVAFSGAGLPVLPWLLIRRREWEREPAHVLDWVE 186

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
             ++ P  +KP   GSS+GI  +    ++   + ++++++   ++++EQ +   E+   +
Sbjct: 187 QRLTYPMFVKPANLGSSVGISKVTGRAALARGIAEAAAYDR--RIVVEQGIPAREIEVSI 244

Query: 182 MGDASLD--VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
           +G+   +  V    VP  ++Y YE KY S  S  ++PA I L++   V+RLA  A +AI 
Sbjct: 245 LGNNEPEASVPGEVVPSGEWYDYEAKYLSGASKILIPAPITLELAARVRRLAVQAFKAID 304

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             G++R DFL +  +  ++  EIN  PG TPVS++  M   +G  + +LL  ++E
Sbjct: 305 GAGLARVDFLLNRETGDLYLNEINTMPGFTPVSMYAMMWEASGLPYTQLLDRLIE 359


>gi|302873595|ref|YP_003842228.1| D-alanine/D-alanine ligase [Clostridium cellulovorans 743B]
 gi|307688224|ref|ZP_07630670.1| D-alanine--D-alanine ligase [Clostridium cellulovorans 743B]
 gi|302576452|gb|ADL50464.1| D-alanine/D-alanine ligase [Clostridium cellulovorans 743B]
          Length = 300

 Score =  152 bits (383), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 93/300 (31%), Positives = 162/300 (54%), Gaps = 11/300 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + +LMGGISSERE+SL SG+A  +A++ + ++   I +D    ++      D AF  LHG
Sbjct: 3   VGILMGGISSEREISLKSGEAVFNAIDKSKYEPVAIVIDSKEDIINKVKGIDFAFLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG VQ++L+ L IPY+  G + SA+ MDK  +K+V+ S G+       V R   D 
Sbjct: 63  QFGEDGTVQSVLQTLNIPYSGCGPMTSAICMDKDMTKKVLKSQGINTARWTTV-RAIQDI 121

Query: 121 QHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
            +     I  P+ +KP  GGSS+    + K + +   ++++  ++   +++IE+YV G E
Sbjct: 122 DYALLDSIGYPFFVKPNSGGSSVATNRVDKKEQVEAAVVEALKYDT--EVMIEEYVKGDE 179

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +TC ++   +  +  I  P  +F+ +  KY   N    +  ++  ++ K V+ +A     
Sbjct: 180 ITCSIINRKTYPIVAIK-PTGEFFDFTSKYQD-NGAEEIVVQLEENLSKTVEAMAIACWD 237

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           A+      R D +    +   + LE+N  PGMT  S+ P+  A AG S+ +L+  ++E++
Sbjct: 238 ALKFSAYVRVDMIIK--NNVPYVLELNTLPGMTKNSLLPKSVAGAGISYTDLISLIIEES 295


>gi|302531349|ref|ZP_07283691.1| D-alanine-D-alanine ligase B [Streptomyces sp. AA4]
 gi|302440244|gb|EFL12060.1| D-alanine-D-alanine ligase B [Streptomyces sp. AA4]
          Length = 316

 Score =  152 bits (383), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 98/299 (32%), Positives = 157/299 (52%), Gaps = 18/299 (6%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG+S ER+VSL SG+  ++AL   G  V + D D  +   L   +PD     LHG
Sbjct: 6   VAVLAGGLSHERDVSLRSGRRLSAALRAEGLTVEEWDTDAGLLERLRTQRPDAVVVALHG 65

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117
             GE+G VQ +LE+L++P+  +       + DK  +K  V   G      I++   T   
Sbjct: 66  GEGENGSVQTVLEMLDVPFVGTHSQGCRRAWDKPTAKAFVQQAGFSTPDWIVLPHSTFRE 125

Query: 118 MDSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           + +Q ++         P ++KP +GGS+LG  V+++   +P  ++    + +GD +L E+
Sbjct: 126 LGAQSVLDAMVERLGLPLILKPDQGGSALGTQVVREAAELPAAMV--GCFAYGDTVLAER 183

Query: 171 YVDGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE 226
           +VDG+E+   V+    G  +L   EI VP+S  Y Y  +Y++  +    PA+I  +  K 
Sbjct: 184 FVDGVEVAVTVIEGENGAEALPAVEI-VPESGVYDYTARYTAGLTDFFTPARISDEAAKA 242

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285
           V  LA  AH+ +G R ISR+D +  P    V +LE+N+ PG+T  S  P     AG + 
Sbjct: 243 VSELAVGAHRWLGLRDISRTDAVITP-DGGVHFLEVNLSPGLTETSTVPMAVEAAGTTL 300


>gi|255283497|ref|ZP_05348052.1| D-alanine--D-alanine ligase [Bryantella formatexigens DSM 14469]
 gi|255265954|gb|EET59159.1| D-alanine--D-alanine ligase [Bryantella formatexigens DSM 14469]
          Length = 341

 Score =  152 bits (383), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 102/341 (29%), Positives = 163/341 (47%), Gaps = 53/341 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKV-------------------SQIDVDRS 41
           + VL GG S+ER+VS+ SG     AL   G                       + DV+R 
Sbjct: 3   IVVLAGGTSTERDVSIVSGTKVCEALRSRGHLAILLDVFCGKEGLQAETAFAEEYDVERE 62

Query: 42  V-----------------------GLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIP 78
                                   G++      D  F  LHG  GEDG +QA  +LL I 
Sbjct: 63  AAYIRSFNDSIEKIKAERREFFGPGVLETCRAADTVFLALHGTCGEDGRIQAAFDLLGIT 122

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP-----PYVIKPL 133
           YT SG L SAL+MDK  +KQ+    GVP    ++V +   DS    +      P V+K  
Sbjct: 123 YTGSGYLGSALAMDKTITKQLFRENGVPAPAGVIVRK--TDSPKSAAELGMELPCVVKTA 180

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
            GGSS+G+ ++  ++     +   + +++ D+L++EQY+ G E T GV+   +  + EI+
Sbjct: 181 CGGSSVGVYIVHTEEEFSEAV--KNGFSYEDKLIVEQYIRGQEYTVGVIDGKAYPIVEIS 238

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
            P + FY Y+ KY + ++    PA +  ++ +++Q +A  A+  +     +R DF+ D  
Sbjct: 239 -PIAGFYDYKNKYQAGSTIETCPAPLSAELTQKMQEIALKAYDTLRLESYARMDFMMDE- 296

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
              ++ LE N  PGMTP S+ P+ AA  G +F +L   ++E
Sbjct: 297 DGGIYCLEANTLPGMTPTSLLPQEAAAVGMNFADLCEKLIE 337


>gi|269926708|ref|YP_003323331.1| D-alanine/D-alanine ligase [Thermobaculum terrenum ATCC BAA-798]
 gi|269790368|gb|ACZ42509.1| D-alanine/D-alanine ligase [Thermobaculum terrenum ATCC BAA-798]
          Length = 362

 Score =  152 bits (383), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 115/337 (34%), Positives = 180/337 (53%), Gaps = 57/337 (16%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAG-------------FKVSQ-------------- 35
           +L GG S+E +VS++S  +   AL+D+              +KV +              
Sbjct: 8   LLFGGRSAEHDVSVASAISMMKALKDSDIDILPCGITREGTWKVGEEAVKMLASSALFAG 67

Query: 36  -------IDVD---RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
                  + VD   RSV   L+ +  D+ F +LHG +GEDG VQ  LEL+ +PY  SG+L
Sbjct: 68  DSDVRDIVPVDSQPRSVPEALSAV--DVVFPLLHGPYGEDGTVQGFLELVNVPYVGSGVL 125

Query: 86  ASALSMDKMRSKQVVSSCGVPVCP--SILVNRFTMDSQHLISP-------PYVIKPLKGG 136
            S+LSMDK+  K++  S G+P+     IL + +  D + +IS        P  +KP   G
Sbjct: 126 GSSLSMDKIAMKKMFESEGLPITRYLGILRSDWLSDPEGIISKIESELEYPVFVKPANLG 185

Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD----ASLDVTEI 192
           SS+G I   KD+S  L  L+ +S  +  +L++EQ V+  EL C V+G+    AS+ V EI
Sbjct: 186 SSIG-ITKAKDRSSLLQALELAS-KYDRRLIVEQGVEARELECAVLGNDYPRASV-VGEI 242

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            +P  +FY++E KY S +S  ++PA IP  +  E++  A  A +A+   G++R DF    
Sbjct: 243 -LPGDEFYTFEAKYISESSKTIIPADIPPSVSDEIRDYAVRAFKAVDAAGLARVDFFLTS 301

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
              KV   EIN  PG TP+S++P++   +G S+ +L+
Sbjct: 302 -ENKVLVNEINTIPGFTPISMYPKLWEASGLSYPDLV 337


>gi|307297640|ref|ZP_07577446.1| D-alanine/D-alanine ligase [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306916900|gb|EFN47282.1| D-alanine/D-alanine ligase [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 305

 Score =  152 bits (383), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 108/302 (35%), Positives = 162/302 (53%), Gaps = 15/302 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AV+ GG SSER+VS+ SG   + +LE  G +V   D+ R     L  LK DL F  LHG
Sbjct: 5   IAVVYGGFSSERDVSVKSGSNISKSLERLGAEVIGFDLKRDRIASLLSLKADLFFLALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS-CGVPVCPSILVNRFTMD 119
            FGEDG VQ ++EL  +PYT S    SA+  DK  + ++V +   +P+   ++  +   D
Sbjct: 65  KFGEDGTVQGLMELAGLPYTSSDSRTSAVCFDKEITYRLVKAEVDLPLWKKVISEK---D 121

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
            +     P VIKP + GSS+G+ +   D +  L        +  D LL+E+Y+DG E+T 
Sbjct: 122 LEGWKIFPCVIKPTREGSSIGVFIC--DDASTLINRTRLLLDVYDSLLLEEYIDGREITV 179

Query: 180 GVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
            ++    G   L V EI  PK  FY YE KY+   +  V+PA I     + +   +   +
Sbjct: 180 SIIDSREGIKVLPVLEIK-PKRRFYDYEAKYTPGLTEFVVPAPIERSTLESIIEKSVAVY 238

Query: 236 QAIGCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           + +GCR  +R D +   L   VF+ LE+N  PGMT +S  P  A  AG +F +++L ++E
Sbjct: 239 KLLGCRDFARVDGI---LKGGVFYFLEVNTIPGMTDLSDLPMSARAAGMTFDDVVLDIIE 295

Query: 295 DA 296
            A
Sbjct: 296 AA 297


>gi|126434497|ref|YP_001070188.1| D-alanyl-alanine synthetase A [Mycobacterium sp. JLS]
 gi|167012328|sp|A3PXS0|DDL_MYCSJ RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|126234297|gb|ABN97697.1| D-alanine--D-alanine ligase [Mycobacterium sp. JLS]
          Length = 371

 Score =  152 bits (383), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 102/299 (34%), Positives = 161/299 (53%), Gaps = 22/299 (7%)

Query: 13  EVSLSSGKACASALEDAGFKVSQIDVDRS-VGLVLAHLKPDLAFNVLHGNFGEDGLVQAI 71
           EVS  SG A A    D G +   + +  +  G VLA +  D+ F VLHG +GEDG +Q +
Sbjct: 72  EVSAESGTALALP-ADPGRRGELVSLSPAPAGEVLAAV--DVVFPVLHGPYGEDGTIQGL 128

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN----RFTMDSQHLISPP 127
           LEL  +PY  +G+LASA  MDK  +K+++ + G+PV   +++       T+D +  +  P
Sbjct: 129 LELAGVPYVGAGVLASAAGMDKEFTKKLLVAEGLPVGDHVVLRPGRANVTLDERERLGLP 188

Query: 128 YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG--DA 185
             +KP +GGSS+G+  +     +P  +   ++  H  ++++E  + G EL CGV+   D 
Sbjct: 189 VFVKPARGGSSIGVSRVSDWAELPAAI--EAARRHDPKVIVEAGIAGRELECGVLEYPDG 246

Query: 186 SLD---VTEIAVP-----KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
            +D   + EI V      +  FY +  KY    +   +PAK+  D+  E++RLA  A +A
Sbjct: 247 RVDASTIGEIRVAGVRGREDGFYDFATKYLDDGAELDVPAKVEDDVADEIRRLAIRAFRA 306

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           I C+G++R DF        V   EIN  PG T +S++P M A +G  +  LL  MV+ A
Sbjct: 307 IDCQGLARVDFFLTDDGPVVN--EINTMPGFTTISMYPRMWAASGVDYPTLLAAMVDTA 363


>gi|53720633|ref|YP_109619.1| D-alanine--D-alanine ligase [Burkholderia pseudomallei K96243]
 gi|53726038|ref|YP_104092.1| D-alanine--D-alanine ligase [Burkholderia mallei ATCC 23344]
 gi|67643627|ref|ZP_00442372.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB)
           (D-Ala-D-Ala ligase B) [Burkholderia mallei GB8 horse 4]
 gi|76810239|ref|YP_334912.1| D-alanine--D-alanine ligase [Burkholderia pseudomallei 1710b]
 gi|121598695|ref|YP_991819.1| D-alanine--D-alanine ligase [Burkholderia mallei SAVP1]
 gi|124384751|ref|YP_001027312.1| D-alanine--D-alanine ligase [Burkholderia mallei NCTC 10229]
 gi|126449009|ref|YP_001082751.1| D-alanine--D-alanine ligase [Burkholderia mallei NCTC 10247]
 gi|126453261|ref|YP_001067784.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei 1106a]
 gi|134280198|ref|ZP_01766909.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei 305]
 gi|166998635|ref|ZP_02264493.1| D-alanine--D-alanine ligase B [Burkholderia mallei PRL-20]
 gi|167721338|ref|ZP_02404574.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei DM98]
 gi|167740308|ref|ZP_02413082.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei 14]
 gi|167817527|ref|ZP_02449207.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei 91]
 gi|167825927|ref|ZP_02457398.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei 9]
 gi|167847413|ref|ZP_02472921.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei B7210]
 gi|167896001|ref|ZP_02483403.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei 7894]
 gi|167912648|ref|ZP_02499739.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei 112]
 gi|167920615|ref|ZP_02507706.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei BCC215]
 gi|217425698|ref|ZP_03457188.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei 576]
 gi|226199604|ref|ZP_03795160.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei Pakistan
           9]
 gi|242317528|ref|ZP_04816544.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei 1106b]
 gi|254178899|ref|ZP_04885553.1| D-alanine--D-alanine ligase B [Burkholderia mallei ATCC 10399]
 gi|254191010|ref|ZP_04897516.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei Pasteur
           52237]
 gi|254199055|ref|ZP_04905470.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei S13]
 gi|254202813|ref|ZP_04909176.1| D-alanine--D-alanine ligase B [Burkholderia mallei FMH]
 gi|254208155|ref|ZP_04914505.1| D-alanine--D-alanine ligase B [Burkholderia mallei JHU]
 gi|254260710|ref|ZP_04951764.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei 1710a]
 gi|254299364|ref|ZP_04966814.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei 406e]
 gi|254357641|ref|ZP_04973915.1| D-alanine--D-alanine ligase B [Burkholderia mallei 2002721280]
 gi|81379043|sp|Q63QJ9|DDL_BURPS RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|81604222|sp|Q62GS9|DDL_BURMA RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|123597910|sp|Q3JNE1|DDL_BURP1 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|190359119|sp|A3MR65|DDL_BURM7 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|190359120|sp|A2S5U3|DDL_BURM9 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|190359121|sp|A1V0R6|DDL_BURMS RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|190359122|sp|A3NZL3|DDL_BURP0 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|52211047|emb|CAH37035.1| D-alanine--d-alanine ligase B [Burkholderia pseudomallei K96243]
 gi|52429461|gb|AAU50054.1| D-alanine--D-alanine ligase B [Burkholderia mallei ATCC 23344]
 gi|76579692|gb|ABA49167.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei 1710b]
 gi|121227505|gb|ABM50023.1| D-alanine--D-alanine ligase B [Burkholderia mallei SAVP1]
 gi|124292771|gb|ABN02040.1| D-alanine--D-alanine ligase B [Burkholderia mallei NCTC 10229]
 gi|126226903|gb|ABN90443.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei 1106a]
 gi|126241879|gb|ABO04972.1| D-alanine--D-alanine ligase B [Burkholderia mallei NCTC 10247]
 gi|134248205|gb|EBA48288.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei 305]
 gi|147747060|gb|EDK54137.1| D-alanine--D-alanine ligase B [Burkholderia mallei FMH]
 gi|147752049|gb|EDK59116.1| D-alanine--D-alanine ligase B [Burkholderia mallei JHU]
 gi|148026705|gb|EDK84790.1| D-alanine--D-alanine ligase B [Burkholderia mallei 2002721280]
 gi|157809278|gb|EDO86448.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei 406e]
 gi|157938684|gb|EDO94354.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei Pasteur
           52237]
 gi|160694813|gb|EDP84821.1| D-alanine--D-alanine ligase B [Burkholderia mallei ATCC 10399]
 gi|169656885|gb|EDS88282.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei S13]
 gi|217391286|gb|EEC31318.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei 576]
 gi|225928350|gb|EEH24381.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei Pakistan
           9]
 gi|238525006|gb|EEP88436.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB)
           (D-Ala-D-Ala ligase B) [Burkholderia mallei GB8 horse 4]
 gi|242140767|gb|EES27169.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei 1106b]
 gi|243065314|gb|EES47500.1| D-alanine--D-alanine ligase B [Burkholderia mallei PRL-20]
 gi|254219399|gb|EET08783.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei 1710a]
          Length = 312

 Score =  152 bits (383), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 102/300 (34%), Positives = 155/300 (51%), Gaps = 17/300 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD---LAFNV 57
           +AVL+GG S+EREVSL+SG+     L DAG      D  +     LA LK +    AFN 
Sbjct: 12  VAVLLGGDSAEREVSLNSGRLVLQGLRDAGIDAHPFDPAQRP---LAALKDEGFVRAFNA 68

Query: 58  LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR-- 115
           LHG +GE+G +Q  L+   I YT SG+L SAL +DK R+K V    G+P  P   V R  
Sbjct: 69  LHGGYGENGQIQGALDFYGIRYTGSGVLGSALGLDKFRTKLVWQQTGIPTPPFETVMRGD 128

Query: 116 -FTMDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
            +   +Q +++    P  +KP   GSS+ +  +K   +  L      +  H   +++E+ 
Sbjct: 129 DYAARAQDIVAKLGVPLFVKPASEGSSVAVEKVKSADA--LPAALEEAAKHDKIVIVEKS 186

Query: 172 VD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
           ++ G E T  +  D  L +  I VP  +FY Y  KY + ++ +++P  +      E +R+
Sbjct: 187 IEGGGEYTACIAADLDLPLIRI-VPAGEFYDYHAKYIANDTQYLIPCGLDAAKEAEFKRI 245

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A  A   +GC    R+DF+ D      F LE+N  PGMT  S+ P+ A   G  + EL++
Sbjct: 246 ARRAFDVLGCTDWGRADFMLDAAGNPYF-LEVNTAPGMTDHSLPPKAARAVGIGYSELVV 304


>gi|269797059|ref|YP_003316514.1| D-alanine--D-alanine ligase [Sanguibacter keddieii DSM 10542]
 gi|269099244|gb|ACZ23680.1| D-alanine--D-alanine ligase [Sanguibacter keddieii DSM 10542]
          Length = 317

 Score =  152 bits (383), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 104/308 (33%), Positives = 171/308 (55%), Gaps = 19/308 (6%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62
           VL GG+S ER+VSL SG+  A AL  A  +V+  DVD  +   LA  +PD+ + +LHG  
Sbjct: 9   VLAGGLSHERDVSLRSGRRVAEALRSANVEVAVHDVDADLIPALAETRPDVVWPILHGAS 68

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---FTMD 119
           GEDG ++ +L+LL++PY  +G  AS ++  K  +K VV+  G+     + + +     + 
Sbjct: 69  GEDGSIRDVLDLLDVPYVGTGPRASRIAWSKPVAKSVVARAGIDTPEYVTLPQSLFRELG 128

Query: 120 SQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
           +Q ++S        P V+KP +GGS+LG+ +++    +P  ++  S + +G+  LIE+ V
Sbjct: 129 AQAVMSAVVDKLGLPLVVKPSRGGSALGVSLVRTVAELPQAMV--SCFAYGEVALIERAV 186

Query: 173 DGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           DG+EL   V+    G ++L   EI       Y Y+ +Y+   + +  PA++P    + V 
Sbjct: 187 DGVELAVSVVETVDGLSTLPAVEIVTEGP--YDYDARYNPGRTEYFSPARLPSSHAEAVA 244

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
             A  AH+A+G R ISR+D +       + +LE+NV PGMT  S+ P+ A   G+S   L
Sbjct: 245 ATAIAAHEALGLRHISRTDLILQ-ADGTIQFLEVNVAPGMTETSLLPQAALAGGWSLPTL 303

Query: 289 LLWMVEDA 296
              +V+ A
Sbjct: 304 YRSVVDHA 311


>gi|330964488|gb|EGH64748.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. actinidiae
           str. M302091]
          Length = 363

 Score =  152 bits (383), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 98/344 (28%), Positives = 175/344 (50%), Gaps = 55/344 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------------------- 40
           +A++ GG SSE EVSL S +   +A++   + ++ I VD+                    
Sbjct: 5   VAIVFGGQSSEHEVSLQSARNVINAIDRESYALTLIGVDKLGRWLRFDEADYLLNANDPA 64

Query: 41  ----------------SVGLVLAHLKP-------DLAFNVLHGNFGEDGLVQAILELLEI 77
                           S G     ++        D+ F ++HG FGEDG +Q +L +L +
Sbjct: 65  RIKLSGSGKQLSLLPGSAGGQFVEVETGQPLAAIDVVFPLIHGAFGEDGALQGLLRMLAV 124

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR-----FTMDSQHLISPPYVIKP 132
           P+  + +LASA  MDK  +K+++   G+ V P +++NR     F   +  L S P  +KP
Sbjct: 125 PFVGADVLASAACMDKDVTKRLLRDAGIAVAPFMVLNRGESLSFAQAAAQL-SLPMFVKP 183

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD--ASLDVT 190
              GSS+G+  +  +      L     ++H  +LLIEQ + G E+ C V+G+    + V 
Sbjct: 184 ANQGSSVGVSKVSDEADFAAALALGFEFDH--KLLIEQGIVGREVECAVLGNDEPQVSVC 241

Query: 191 EIAVPKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
              +   +FY+Y+ KY + +   + +PA++P D+  +V+ +A  A++ +GC G+SR DF 
Sbjct: 242 GEVIANDEFYAYDTKYLNGDQARIAIPAELPADLSDQVRDVALQAYKVLGCAGLSRVDF- 300

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           F   +R++   E+N  PG T +S++P++   +G S+ EL+  ++
Sbjct: 301 FVTEAREIIINEVNTLPGFTSISMYPKLWQASGLSYAELIHRLI 344


>gi|229073690|ref|ZP_04206803.1| D-alanine--D-alanine ligase [Bacillus cereus F65185]
 gi|229079781|ref|ZP_04212314.1| D-alanine--D-alanine ligase [Bacillus cereus Rock4-2]
 gi|228703621|gb|EEL56074.1| D-alanine--D-alanine ligase [Bacillus cereus Rock4-2]
 gi|228709399|gb|EEL61460.1| D-alanine--D-alanine ligase [Bacillus cereus F65185]
          Length = 304

 Score =  152 bits (383), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 97/305 (31%), Positives = 168/305 (55%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGG+SSE++VS+ +G    + L+   +++  I ++  V L+      D A   LHG
Sbjct: 3   IGVIMGGVSSEKQVSIMTGNEMIAHLDKNKYEIVPITLNEKVDLIEKAKDIDFALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---FT 117
            +GEDG VQ  LE L IPY+ S +L+S++ MDK  SK+++   GV     I + +     
Sbjct: 63  KYGEDGTVQGTLESLGIPYSGSNMLSSSICMDKNISKKILRYEGVETPDWIELTKMEDLN 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGI-IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
           +D    +  P V+KP  GGSS+G+ IV  K++ I + L     W+   +++IE+Y+ G E
Sbjct: 123 LDELDKLGFPLVVKPNSGGSSVGVKIVYNKNELISM-LETVFEWDS--EVVIEKYIKGDE 179

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +TC ++    L +  I    ++F+ Y  KY   ++   +  ++P +I + V + +   ++
Sbjct: 180 ITCSILDGKQLPIVSIR-HAAEFFDYNAKYDDTSTVEEV-IELPAEINERVNKASLACYK 237

Query: 237 AIGCRGISRSDFLF-DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           A+ C   +R D +  D +    + +EIN  PGMT  S+ P+ A  AG S+ ELL  ++E 
Sbjct: 238 ALKCSVYARVDMMVKDGIP---YVMEINTLPGMTQSSLLPKSAEAAGISYSELLDMIIET 294

Query: 296 ASCLR 300
           +  +R
Sbjct: 295 SLKVR 299


>gi|210614784|ref|ZP_03290313.1| hypothetical protein CLONEX_02527 [Clostridium nexile DSM 1787]
 gi|210150553|gb|EEA81562.1| hypothetical protein CLONEX_02527 [Clostridium nexile DSM 1787]
          Length = 351

 Score =  152 bits (383), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 108/348 (31%), Positives = 172/348 (49%), Gaps = 61/348 (17%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------DR--------SVGL 44
           + VL GG+S+ER+VSL+SG      L + G +   +DV        D+        + GL
Sbjct: 3   IVVLAGGLSTERDVSLTSGAGICRTLRENGHQAFLLDVFLGFPYDSDKLEEVFTLPNAGL 62

Query: 45  VLAH----LKPDLA----------------------------FNVLHGNFGEDGLVQAIL 72
            +A      +PDLA                            F  LHG+ GE+G +QA  
Sbjct: 63  EIADGIKTTEPDLAAIKASREDQSDCFLGPNVIDICRLADIVFMGLHGDVGENGKLQATF 122

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISP 126
           ++L I YT    L SAL+MDK  +KQ+ +  GV   P+ L    T D +        ++ 
Sbjct: 123 DILGIKYTGPNYLGSALAMDKGVTKQIFTMAGV---PTPLGTNLTKDRKDTALSDLGLTL 179

Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186
           P V+KP  GGSS+G+ ++  D          +S+ + D+++IE Y+ G E   G++   +
Sbjct: 180 PVVVKPCSGGSSIGVYIV--DTMDAYKEAVENSFRYEDEIVIEPYIKGREFAVGIIDGKA 237

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRS 246
           L V EI +PK+ F+ Y  KY    +  + PA I  ++ + +QR A LA +A+     SR+
Sbjct: 238 LPVIEI-IPKTGFFDYANKYQDGCTEEICPANIDEEVTERMQRAAELAFKALKLDIYSRA 296

Query: 247 DFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           DFL D  +  ++ LE+N  PGMT  S+ P+ A  AG ++ +L   +++
Sbjct: 297 DFLLDE-NNDIYCLEVNSLPGMTAASLLPKEARAAGITYGDLCELIIQ 343


>gi|284993431|ref|YP_003411986.1| D-alanine--D-alanine ligase [Geodermatophilus obscurus DSM 43160]
 gi|284066677|gb|ADB77615.1| D-alanine--D-alanine ligase [Geodermatophilus obscurus DSM 43160]
          Length = 329

 Score =  152 bits (383), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 99/301 (32%), Positives = 158/301 (52%), Gaps = 18/301 (5%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62
           VL GG++ EREVSLSSG   A  L  AG +    D D  +   LA    D  F  LHG  
Sbjct: 21  VLAGGLNVEREVSLSSGTQVAEELARAGVEAELRDADAELLPGLAAAPADAVFIALHGAT 80

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
           GEDG ++A+L+L  +PY  S   +  L+ DK  +K VV S GV     + +   T     
Sbjct: 81  GEDGALRAVLDLAGVPYVGSPAASCRLAWDKPAAKSVVRSAGVTTPDWVALPHSTFRELG 140

Query: 123 L----------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                      +  P ++KP  GGS+LG+  + + + +P  ++  S + +GD +++E++V
Sbjct: 141 AGAVLDLIVARLGLPLMVKPASGGSALGVQKVSRVEDLPAAMV--SCFAYGDTVMVERFV 198

Query: 173 DGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           DG+EL   V+    G  +L   EIA P+S  + Y  +Y+   + +  PA++  ++  +  
Sbjct: 199 DGVELALSVVDLGEGPQALPAVEIA-PESGVFDYTSRYTPGLTEYHAPARVSDEVAGKAA 257

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
            LA   H+A+G   +SR+D +  P   +V +LE+NV PG+T  S+FP     +G S  ++
Sbjct: 258 ELAVQVHRALGLADLSRTDAIVGP-DGEVHFLEVNVSPGLTRTSMFPMAVEASGSSLGDV 316

Query: 289 L 289
           L
Sbjct: 317 L 317


>gi|297565114|ref|YP_003684086.1| D-alanine/D-alanine ligase [Meiothermus silvanus DSM 9946]
 gi|296849563|gb|ADH62578.1| D-alanine/D-alanine ligase [Meiothermus silvanus DSM 9946]
          Length = 324

 Score =  151 bits (382), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 101/313 (32%), Positives = 167/313 (53%), Gaps = 31/313 (9%)

Query: 3   VLMGGISSEREVSLSSGKACASAL----------EDAGFKVSQIDVDRSVGLVLA----H 48
           ++ GG S E EVSLSS +   +A+          +D  + + Q    R++    A    H
Sbjct: 8   LIAGGRSGEHEVSLSSARGVLAAMPHPTDLAVIAKDGKWLLGQA-AQRALHTGSAEEGEH 66

Query: 49  LKPD--------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
             P         +AF +LHG  GEDG +Q   E+L +PY  +G+ ASAL MDK   K+V+
Sbjct: 67  AFPPPIEWRAYAVAFPLLHGTLGEDGTIQGFFEILGLPYVGAGVTASALCMDKDLCKRVL 126

Query: 101 SSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160
           +  G+PV P +   R           PY +KP   GSS+G+  +K DQ     L ++  W
Sbjct: 127 AQAGIPVVPWVSFYRGDPVPPLPFPAPYFVKPANTGSSVGVSKVKTDQDGREALEEAFRW 186

Query: 161 NHGDQLLIEQYVDGI-ELTCGVMGDASLD---VTEIAVPKSDFYSYELKYSSLNSTHVLP 216
           +   +++IEQ ++G+ EL   ++G+   +   + EI+  +S+FY Y+ KY+   +   +P
Sbjct: 187 DR--KVVIEQGLEGVRELEIALLGNIYAEPSVIGEISY-QSEFYDYQTKYTEGLAHMRIP 243

Query: 217 AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPE 276
           A+IP ++ K ++ LA  A++ +G RG++R DF F      ++  E+N  PG TP S++P+
Sbjct: 244 ARIPAELEKRIRELAVAAYRVLGVRGMARVDF-FLSQDGTLYLNELNTIPGFTPTSMYPK 302

Query: 277 MAAYAGYSFRELL 289
           +   +G  + ELL
Sbjct: 303 LWQASGMRYPELL 315


>gi|304413645|ref|ZP_07395089.1| D-alanine:D-alanine ligase [Candidatus Regiella insecticola LSR1]
 gi|304283736|gb|EFL92130.1| D-alanine:D-alanine ligase [Candidatus Regiella insecticola LSR1]
          Length = 328

 Score =  151 bits (382), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 99/299 (33%), Positives = 156/299 (52%), Gaps = 13/299 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+ERE+SL SG+A    L +AG     +D        L        F  LHG
Sbjct: 27  IAVLLGGTSAEREISLLSGQAVLKGLIEAGIDAHAVDTRDVPVTQLKEQGFSKVFIALHG 86

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTM 118
             GEDG +Q  L  L++PYT S   +SALSMDK+++K    S G+P+ P + +   +F  
Sbjct: 87  RGGEDGSLQKQLASLQLPYTGSHAASSALSMDKLQTKLRWQSLGLPIAPHVALTSQQFAA 146

Query: 119 DSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
            S   ++        P ++KP   GSSLG+  +     +P  L    ++ + +++LIE++
Sbjct: 147 LSSGELARQIADLGFPLIVKPSHEGSSLGMSKVNAFNELPPSL--EKAFRYDEEVLIEKW 204

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+ +L    I  P   FY Y+ KY S  + +  P+ +     +++  LA
Sbjct: 205 LSGSEFTVAILGEQTLPSIRIQAP-GIFYDYDAKYLSNQTHYFCPSGLNEKQEQQLAALA 263

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             A+QA+GC G  R D + D      + LE+N  PGMT  S+ P  A   G +F +L++
Sbjct: 264 KQAYQALGCSGWGRVDVMQDS-DANFYLLEVNTSPGMTEHSLVPMAARQYGLNFSQLVV 321


>gi|256751680|ref|ZP_05492555.1| D-alanine/D-alanine ligase [Thermoanaerobacter ethanolicus CCSD1]
 gi|307265111|ref|ZP_07546671.1| D-alanine/D-alanine ligase [Thermoanaerobacter wiegelii Rt8.B1]
 gi|256749489|gb|EEU62518.1| D-alanine/D-alanine ligase [Thermoanaerobacter ethanolicus CCSD1]
 gi|306919909|gb|EFN50123.1| D-alanine/D-alanine ligase [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 359

 Score =  151 bits (382), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 105/340 (30%), Positives = 174/340 (51%), Gaps = 55/340 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           +AVL GG S E EVSL S K+  + L+   +++  I + +     L              
Sbjct: 6   IAVLFGGQSGEHEVSLMSAKSIINNLDKDKYEIYMIGITKKGEWYLYRGDVEKIETGEWE 65

Query: 49  --------------------------LKP-DLAFNVLHGNFGEDGLVQAILELLEIPYTH 81
                                       P D+ F VLHG  GEDG +Q +LELL+IPY  
Sbjct: 66  KEGIPATMGASTKYRGIITFEDGKNGFYPIDVVFPVLHGPNGEDGTIQGLLELLDIPYVG 125

Query: 82  SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--------QHLISPPYVIKPL 133
           + +L+SAL MDK+ +K++    G+P    ++V R  ++         +HL  P +V KP 
Sbjct: 126 ANVLSSALCMDKVFTKRIFKEAGLPTPDFVVVYRKEIEDLEAIKKKVEHLGYPCFV-KPA 184

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT--- 190
             GSS+GI  +  ++ +P  L  ++ ++   +LLIE+ +D  E+ C V+G+ +   +   
Sbjct: 185 NLGSSVGITKVHNEEELPGALKLAAKYDR--KLLIERGIDAREIECSVLGNENPQASIAG 242

Query: 191 EIAVPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
           EI VP ++FY Y  KY     S  ++PA +P +  +EV++LA  A++A+  RG++R DFL
Sbjct: 243 EI-VPSNEFYDYNAKYFDGGKSLLLIPAPLPDEKMEEVRQLAIKAYKALDLRGMARVDFL 301

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
            D  +  ++  E+N  PG T +S++P++   +G  +  LL
Sbjct: 302 MDRNTGTLYLNEVNTIPGFTKISMYPKLWEVSGKPYSILL 341


>gi|167904388|ref|ZP_02491593.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei NCTC
           13177]
 gi|237813917|ref|YP_002898368.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB)
           (D-Ala-D-Ala ligase B) [Burkholderia pseudomallei
           MSHR346]
 gi|254180548|ref|ZP_04887146.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei 1655]
 gi|184211087|gb|EDU08130.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei 1655]
 gi|237505584|gb|ACQ97902.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB)
           (D-Ala-D-Ala ligase B) [Burkholderia pseudomallei
           MSHR346]
          Length = 312

 Score =  151 bits (382), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 102/300 (34%), Positives = 155/300 (51%), Gaps = 17/300 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD---LAFNV 57
           +AVL+GG S+EREVSL+SG+     L DAG      D  +     LA LK +    AFN 
Sbjct: 12  VAVLLGGDSAEREVSLNSGRLVLQGLRDAGIDAHPFDPAQRP---LAALKDEGFVRAFNA 68

Query: 58  LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR-- 115
           LHG +GE+G +Q  L+   I YT SG+L SAL +DK R+K V    G+P  P   V R  
Sbjct: 69  LHGGYGENGQIQGALDFYGIRYTGSGVLGSALGLDKFRTKLVWQQTGIPTPPFETVMRGD 128

Query: 116 -FTMDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
            +   +Q +++    P  +KP   GSS+ +  +K   +  L      +  H   +++E+ 
Sbjct: 129 DYAARAQAIVAKLGVPLFVKPASEGSSVAVEKVKSADA--LPAALEEAAKHDKIVIVEKS 186

Query: 172 VD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
           ++ G E T  +  D  L +  I VP  +FY Y  KY + ++ +++P  +      E +R+
Sbjct: 187 IEGGGEYTACIAADLDLPLIRI-VPAGEFYDYHAKYIANDTQYLIPCGLDAAKEAEFKRI 245

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A  A   +GC    R+DF+ D      F LE+N  PGMT  S+ P+ A   G  + EL++
Sbjct: 246 ARRAFDVLGCTDWGRADFMLDAAGNPYF-LEVNTAPGMTDHSLPPKAARAVGIGYSELVV 304


>gi|326390825|ref|ZP_08212377.1| D-alanine/D-alanine ligase [Thermoanaerobacter ethanolicus JW 200]
 gi|325993084|gb|EGD51524.1| D-alanine/D-alanine ligase [Thermoanaerobacter ethanolicus JW 200]
          Length = 359

 Score =  151 bits (382), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 107/340 (31%), Positives = 179/340 (52%), Gaps = 55/340 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI-------------DVDR------- 40
           +AVL GG S E EVSL S K+  + L+   +++  I             DV++       
Sbjct: 6   IAVLFGGQSGEHEVSLMSAKSIINNLDKDKYEIYMIGIAKKGEWYLYRGDVEKIETGEWE 65

Query: 41  ------SVGLVLAH------------LKP-DLAFNVLHGNFGEDGLVQAILELLEIPYTH 81
                 ++G    +              P D+ F VLHG  GEDG +Q +LELL+IPY  
Sbjct: 66  KEGIPATMGASTKYRGIITFEDGKNGFYPIDVVFPVLHGPNGEDGTIQGLLELLDIPYVG 125

Query: 82  SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--------QHLISPPYVIKPL 133
           + +L+SAL MDK+ +K++    G+P    ++V R  ++         +HL  P +V KP 
Sbjct: 126 ANVLSSALCMDKVFTKRIFKEAGLPTPDFVVVYRKEIEDLEAIKKKVEHLGYPCFV-KPA 184

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT--- 190
             GSS+GI  +  ++ +P  L  ++ ++   +LLIE+ +D  E+ C V+G+ +   +   
Sbjct: 185 NLGSSVGITKVHNEEELPGALKLAAKYDR--KLLIERGIDAREIECSVLGNENPQASIAG 242

Query: 191 EIAVPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
           EI VP ++FY Y  KY     S  ++PA +P +  +EV++LA  A++A+  RG++R DFL
Sbjct: 243 EI-VPSNEFYDYNAKYFDGGKSLLLIPAPLPDEKMEEVRQLAIKAYKALDLRGMARVDFL 301

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
            D  +  ++  E+N  PG T +S++P++   +G  +  LL
Sbjct: 302 MDRNTGTLYLNEVNTIPGFTKISMYPKLWEVSGKPYSILL 341


>gi|225181129|ref|ZP_03734575.1| D-alanine/D-alanine ligase [Dethiobacter alkaliphilus AHT 1]
 gi|225168098|gb|EEG76903.1| D-alanine/D-alanine ligase [Dethiobacter alkaliphilus AHT 1]
          Length = 353

 Score =  151 bits (382), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 108/332 (32%), Positives = 170/332 (51%), Gaps = 41/332 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAG-FKVSQIDVDRS-----VGLVLAHLKP--- 51
           +AVL GG S E EVSL S  +    L D G ++V  + + R       G+ +A L     
Sbjct: 6   IAVLHGGRSGEHEVSLRSAASIMDGLRDVGQYEVLPVFISREGIWTLEGVRVAILPEPGI 65

Query: 52  -----------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKM 94
                            D+ F VLHG +GEDG VQ +LEL  IPY  +G+  SA+ MDK+
Sbjct: 66  GGLYVLEGEKAGEVIPVDVVFPVLHGTYGEDGTVQGLLELARIPYVGAGVPGSAIGMDKI 125

Query: 95  RSKQVVSSCGVPVCPSI--LVNRFTMDSQHLISP-------PYVIKPLKGGSSLGIIVIK 145
             K  + + G+PV P +   V  +  + + L+         P  +KP   GSS+GI   K
Sbjct: 126 LMKAGLLAAGLPVGPYLWFTVADWEENKKQLLKQIEEELAFPCFVKPANLGSSVGIS--K 183

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSY 202
              S  L+   + +  +  ++L+E+ + G E+ C V+G+   + +   EI +P +DFY Y
Sbjct: 184 AYDSAQLEKAINEALQYDRRVLVEKMLTGCEIECSVLGNDRPEASVPGEI-IPCNDFYDY 242

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
             KY   NS   +PAK+  +  K+V+ +A     A+ C G+ R DF  D  + +++ +EI
Sbjct: 243 SAKYLDDNSGLEIPAKLAPETIKKVREMAVQTFIALDCAGLGRVDFFVDEKTGEMWIIEI 302

Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           N  PG T +S++P++   +G SF ELL  +V+
Sbjct: 303 NTLPGFTSISMYPKLWEASGISFNELLQKLVK 334


>gi|226941966|ref|YP_002797040.1| D-alanine--D-alanine ligase [Laribacter hongkongensis HLHK9]
 gi|259645169|sp|C1D5L4|DDL_LARHH RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|226716893|gb|ACO76031.1| DdlB [Laribacter hongkongensis HLHK9]
          Length = 308

 Score =  151 bits (382), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 105/302 (34%), Positives = 151/302 (50%), Gaps = 14/302 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AV+MGG S ERE+SL SG+   +AL   G      D        L     D  F  LHG
Sbjct: 12  VAVMMGGNSCEREISLMSGQGVLNALRGQGVDAHAFDPAEKPLAALQSEGFDRVFIALHG 71

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG +Q  LE + IPYT  G++ASA+ MDK RSK V  + G+PV P     R   D 
Sbjct: 72  AFGEDGTLQGALETMGIPYTGCGVMASAIGMDKWRSKLVWKAAGLPV-PDF---RLLADD 127

Query: 121 QHL------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
                    +  P  +KP   GSSLG+  ++K   +     ++  ++    +L EQ+V G
Sbjct: 128 SDFAAIEAELGLPMFVKPACEGSSLGVTKVRKAGELAQAYAEARKFD--PLVLAEQFVGG 185

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
            E T  ++   +L   +I  P ++FY Y+ KY   ++ +  PA +  +    ++RLA   
Sbjct: 186 GEYTVALLEGRALPAIKIE-PATEFYDYDAKYFRDDTVYRCPAGMDDEHELAMRRLAEQG 244

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
              +G  G  R DFL D   +  + LEIN  PGMT  S+ P  A  AG ++  L L ++E
Sbjct: 245 FAVLGGSGWGRIDFLVDEAGQP-YLLEINTAPGMTTHSLVPMAAREAGLTYEALCLKVLE 303

Query: 295 DA 296
            A
Sbjct: 304 AA 305


>gi|238760617|ref|ZP_04621746.1| D-alanine--D-alanine ligase [Yersinia aldovae ATCC 35236]
 gi|238701177|gb|EEP93765.1| D-alanine--D-alanine ligase [Yersinia aldovae ATCC 35236]
          Length = 249

 Score =  151 bits (382), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 87/244 (35%), Positives = 139/244 (56%), Gaps = 13/244 (5%)

Query: 55  FNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
           F  LHG  GEDG +Q +LE L++PYT SG++ASAL+MDK+R+K V  + G+P+ P + +N
Sbjct: 2   FIALHGRGGEDGTLQGVLEFLKLPYTGSGVMASALTMDKLRTKLVWQASGLPISPYVALN 61

Query: 115 R---FTMDSQHLISP------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
           R    T+  + L +       P ++KP + GSS+G+  + K   +   L++  ++ H   
Sbjct: 62  RQQFATLSPEALAAAVAQLGLPLIVKPSREGSSVGMSKVDKMSGLHDALVE--AFRHDSD 119

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
           +LIE+++ G E T  ++GD  L    I  P   FY YE KY S  + +  P+ +  ++ +
Sbjct: 120 VLIEKWLSGPEFTVAIVGDDVLPSIRIQAPGV-FYDYEAKYLSDKTQYFCPSGLSSELEQ 178

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285
           ++  LA  A+QA+ C G  R D + D      + LE+N  PGMT  S+ P  A  +G SF
Sbjct: 179 QLATLALQAYQALDCSGWGRVDVMQDS-DGSFYLLEVNTSPGMTSHSLVPMAARQSGLSF 237

Query: 286 RELL 289
            +L+
Sbjct: 238 SQLV 241


>gi|168207650|ref|ZP_02633655.1| D-alanine--D-alanine ligase [Clostridium perfringens E str.
           JGS1987]
 gi|168211769|ref|ZP_02637394.1| D-alanine--D-alanine ligase [Clostridium perfringens B str. ATCC
           3626]
 gi|170661018|gb|EDT13701.1| D-alanine--D-alanine ligase [Clostridium perfringens E str.
           JGS1987]
 gi|170710279|gb|EDT22461.1| D-alanine--D-alanine ligase [Clostridium perfringens B str. ATCC
           3626]
          Length = 301

 Score =  151 bits (382), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 95/297 (31%), Positives = 165/297 (55%), Gaps = 9/297 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGGISSERE+S+ SG +   AL+   ++   I ++    L+      D A   LHG
Sbjct: 3   VGVIMGGISSEREISIQSGNSVVHALDKDKYEAIPIVLNEKEDLIEKVKGIDFALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF-TMD 119
            FGEDG VQ++L+ L IP++  G L+SA+ MDK  +K++++   V     ++V+    +D
Sbjct: 63  KFGEDGTVQSVLKTLGIPFSGCGPLSSAICMDKDMTKRILAFGNVRTARWVMVSSVDEID 122

Query: 120 SQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            + +  +  P  IKP  GGSS+   +++  +++   +L++  ++   +++IE+Y+ G E+
Sbjct: 123 YEKIENLGYPVFIKPNNGGSSVATTLVESKEAVKDAVLEALKYDT--EVMIEEYIKGDEI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC ++    L V  I  PK  F+    KY    +   +  ++  D++KEV+++A   ++ 
Sbjct: 181 TCPIIDGKMLPVLAIK-PKGKFFDIASKYEDGGADEFI-VELNEDLHKEVEKMALETYKL 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           + C   +R D L        + LE+N  PGMT  S+FP+ AA    SF ELL  ++E
Sbjct: 239 LKCDVYARVDMLVK--DNIPYVLEVNTLPGMTKNSLFPKSAAGINMSFEELLDTIIE 293


>gi|148274154|ref|YP_001223715.1| putative D-alanine-D-alanine ligase [Clavibacter michiganensis
           subsp. michiganensis NCPPB 382]
 gi|147832084|emb|CAN03057.1| putative D-alanine-D-alanine ligase [Clavibacter michiganensis
           subsp. michiganensis NCPPB 382]
          Length = 321

 Score =  151 bits (382), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 103/308 (33%), Positives = 158/308 (51%), Gaps = 18/308 (5%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62
           VL GGIS ER+VSL SG+  A AL  AG + S  D D ++   L    P + + VLHG  
Sbjct: 11  VLAGGISHERDVSLRSGRRVADALRAAGVQASLRDPDATLLDFLRDTPPAVVWPVLHGAS 70

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-- 120
           GEDG +  +LEL  +PY  S   ++ L+ DK  +K +  S G+    S+ + + T     
Sbjct: 71  GEDGALLGLLELAGVPYVGSSARSARLAWDKPTAKAIAESAGIRTPRSVTLPKDTFRELG 130

Query: 121 --------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                      +  PY +KP +GGS+ G+ ++   +++P  ++   ++ +GD  LIEQ V
Sbjct: 131 AAAVLRLVTEAVPAPYAVKPARGGSAQGVTIVTDAEALPRAMVD--AYTYGDVALIEQLV 188

Query: 173 DGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           +G E+  G++    G  +L  TEI VP S  Y YE +Y++  +    PA+I  D      
Sbjct: 189 EGTEVAIGILDTGDGPEALPATEI-VPTSGVYGYEARYNAGLTRFFTPARISPDANAAAS 247

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
             A   H+A+G   +SR D + D      F +E+NV PG+T  S+ P+  A AG    +L
Sbjct: 248 AAAIGIHRALGIGQMSRVDIIIDAAGEPWF-IEVNVIPGLTETSLLPQGLAAAGVEVGDL 306

Query: 289 LLWMVEDA 296
              + E A
Sbjct: 307 YRRLAEAA 314


>gi|315604701|ref|ZP_07879764.1| D-alanine-D-alanine ligase [Actinomyces sp. oral taxon 180 str.
           F0310]
 gi|315313713|gb|EFU61767.1| D-alanine-D-alanine ligase [Actinomyces sp. oral taxon 180 str.
           F0310]
          Length = 378

 Score =  151 bits (381), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 84/266 (31%), Positives = 144/266 (54%), Gaps = 18/266 (6%)

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV 105
           L H+  D+ F +LHG +GEDG +Q + E+  + Y   G+ +SA+SMDK  +K V+++ G+
Sbjct: 110 LGHV--DIVFPLLHGPYGEDGTIQGLFEMAGVRYVGCGVTSSAISMDKHLTKTVLAAAGI 167

Query: 106 PVCPSILVNRFTMDSQ--------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
            V    LV     +S           +  P  +KP + GSS+GI  +   + +P  + ++
Sbjct: 168 DVGRWELVTARQWESDPGACVERIERLGFPVFVKPCRAGSSVGISRVTSREDLPTAIKEA 227

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMG------DASLDVTEIAVPKSDFYSYELKYSSLNS 211
           +  NH  ++++E  V G E+ CGV+G        +  + EI VP+ +FY Y+ KY     
Sbjct: 228 A--NHDPRVIVEASVSGREIECGVLGARPDWSSGTAPLGEIVVPEGEFYDYDHKYVDDVV 285

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271
               PA++     + ++  A+ A  A+ C G++R DF  D  +  V   E+N  PG TP+
Sbjct: 286 GLSCPAEVSAAYAQRIRETAWRAFDALECEGLARVDFFLDEATDTVIINEVNTMPGFTPI 345

Query: 272 SIFPEMAAYAGYSFRELLLWMVEDAS 297
           S++P+M A AG ++ +LL  ++ +AS
Sbjct: 346 SMYPQMWAAAGLNYSDLLSELLTEAS 371


>gi|27904697|ref|NP_777823.1| D-alanine--D-alanine ligase [Buchnera aphidicola str. Bp (Baizongia
           pistaciae)]
 gi|29427409|sp|P59435|DDL_BUCBP RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|27904094|gb|AAO26928.1| D-alanine-D-alanine ligase [Buchnera aphidicola str. Bp (Baizongia
           pistaciae)]
          Length = 309

 Score =  151 bits (381), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 100/307 (32%), Positives = 163/307 (53%), Gaps = 15/307 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S ER +SL SG    ++L  +G     ID        L H K   AF  LHG
Sbjct: 8   IAVLLGGTSQERNISLISGYNILNSLLKSGIHAVAIDTKDFPITQLPHQKFTKAFIALHG 67

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q++L+ L IP+T S  L SA+S++K ++K +  S  +PV P + +N+   + 
Sbjct: 68  RDGEDGTIQSVLKYLNIPFTGSKTLPSAISINKFKTKLLWQSFNLPVVPYLHINKHEFNK 127

Query: 121 QH---------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
           +          L+  P ++KP + GSS+GI ++   ++  L     +++   + +LIE++
Sbjct: 128 KFLQKFKKNISLLGLPIIVKPNQEGSSIGITIVYSYET--LYKACKTAFIFDNSILIEKF 185

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G   L +  I  P++ FY+Y  KY S  +T+  P+ +      E++++ 
Sbjct: 186 IYGEEYTISILGKKILPIIRIC-PENTFYNYNSKYLSNRTTYFCPSGLNKLKELELKKIT 244

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             A   I   G  R D + D   +  FW LE N  PGMT  S+FP  A  AG S++ L+ 
Sbjct: 245 LTAWNIIDGTGWGRVDVIMD--YKNKFWLLEANTCPGMTDHSLFPMSAKKAGISYQILVQ 302

Query: 291 WMVEDAS 297
            ++E A+
Sbjct: 303 KILELAN 309


>gi|237654082|ref|YP_002890396.1| D-alanine--D-alanine ligase [Thauera sp. MZ1T]
 gi|237625329|gb|ACR02019.1| D-alanine/D-alanine ligase [Thauera sp. MZ1T]
          Length = 304

 Score =  151 bits (381), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 109/303 (35%), Positives = 159/303 (52%), Gaps = 16/303 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL SG A  +AL+ AG      D       VL     + AF  LHG
Sbjct: 8   VAVLFGGSSAEREVSLMSGAAVLAALQAAGVDAHAFDPAERDLHVLKEEGFERAFIALHG 67

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG VQ  LEL+ IPYT SG++ASALSMDK R+K V  S G+P  P   +     D 
Sbjct: 68  RGGEDGTVQGALELMGIPYTGSGVMASALSMDKWRTKMVWLSAGLPT-PRYAILEHDSDW 126

Query: 121 QHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN---HGDQLLI-EQYVD 173
             +++    P  +KP+  GSS+G   + +   +       ++W      D+L+I E+++ 
Sbjct: 127 DAVVAELGLPIFVKPVHEGSSMGATKVVEAGQL------RAAWELAARYDRLVIAEEFIC 180

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           G ELT   + D +L +  I  P  + Y Y+ KY + ++ +  P+ +P     E+Q +   
Sbjct: 181 GAELTAPFLEDRALPLVRIVAPGGN-YDYQHKYFTDDTRYDCPSGLPAAQEAELQAMVMK 239

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
             + +GCRG  R+D +     R  + LE+N  PGMT  S+ P  A  AG  F  L L ++
Sbjct: 240 CARVLGCRGWGRADLILTEDGRP-YLLEMNTSPGMTGHSLVPMSARVAGLDFTALCLEIL 298

Query: 294 EDA 296
           + A
Sbjct: 299 QGA 301


>gi|313905746|ref|ZP_07839106.1| D-alanine/D-alanine ligase [Eubacterium cellulosolvens 6]
 gi|313469453|gb|EFR64795.1| D-alanine/D-alanine ligase [Eubacterium cellulosolvens 6]
          Length = 346

 Score =  151 bits (381), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 103/339 (30%), Positives = 155/339 (45%), Gaps = 48/339 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------------DRSVGLV 45
           + VL  G S+ER VS+ SG     AL   G +   +DV               D  V  +
Sbjct: 3   IVVLAAGTSTERTVSIVSGTGICKALRSLGHQAILVDVFAGWEDVDVQTAFDDDYDVDEL 62

Query: 46  LAHLK---------------------------PDLAFNVLHGNFGEDGLVQAILELLEIP 78
            A+++                            D+ F  LHG+ GEDG VQA  +L+ I 
Sbjct: 63  AAYIRGFNDKIPEMKKTRREFFGPKVLDLCREADIVFLALHGSNGEDGRVQAAFDLMGIR 122

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---FTMDSQHLISPPYVIKPLKG 135
           YT +  ++SA+SMDK R+KQV  + GV       V R        +  +  P +IKP  G
Sbjct: 123 YTGTDYISSAISMDKSRTKQVFDASGVSTPHGCTVYRGETRKTAEEFGLELPVIIKPCCG 182

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195
           GSS+G+ +   ++ +   L  + S       +IE+++ G E TC V+   +  + EI  P
Sbjct: 183 GSSVGVTICHTEKDVEAGLALAFSLEQ--SAVIEEFIQGREFTCAVIDGKAYPIVEIH-P 239

Query: 196 KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255
           K  +Y +  KY +  +    PA+I  +   E+Q LA     A+G +   R DFL      
Sbjct: 240 KEGYYDFTNKYKAGATIETCPAQISEEKTAEMQNLAVKGAAAVGMQAYGRLDFLMRDGDE 299

Query: 256 KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           K++ LE+N  PGMTP S+ P+ AA  G  +  L   M+E
Sbjct: 300 KLYCLEVNTLPGMTPTSLVPQEAAAVGIDYAHLCQLMIE 338


>gi|229829654|ref|ZP_04455723.1| hypothetical protein GCWU000342_01751 [Shuttleworthia satelles DSM
           14600]
 gi|229791643|gb|EEP27757.1| hypothetical protein GCWU000342_01751 [Shuttleworthia satelles DSM
           14600]
          Length = 368

 Score =  151 bits (381), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 108/339 (31%), Positives = 163/339 (48%), Gaps = 55/339 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------------DRS---- 41
           + VL GG+S+ER+VS  SG   A AL   G +V  +DV               DR+    
Sbjct: 20  IVVLAGGLSTERDVSFKSGDMVARALRRKGHQVLLLDVFMGYGDAECDISDIFDRAEEVS 79

Query: 42  ------------VGLVLAHLK-----------------PDLAFNVLHGNFGEDGLVQAIL 72
                       +  + A  K                  D+ F  LHG  GE+G VQA  
Sbjct: 80  VRVEDIPKTAPDIAAIRAGRKDQSKTFFGPNVIAICQAADIVFMALHGADGENGKVQAAF 139

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFTMDSQHLISPPYV 129
           +L  I YT +  L  A++MDK  +K   ++ G+P    I +    R     +  I  P V
Sbjct: 140 DLFGIQYTGNSYLPCAIAMDKGVAKTFFTAYGIPTPSGITLEKEERQDAAKKAKIHYPCV 199

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           +KP  GGSS+G+ +++    +   L ++  W   D+++IE+Y+ G E + GVM D  L V
Sbjct: 200 VKPACGGSSVGVTIVEDPGRLEEALDEAFYWE--DEVVIEEYIKGREFSVGVMEDQVLPV 257

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
            EIA P   FY ++ KY++ ++    PA +P +  + +Q+ A    +A+G    SR DFL
Sbjct: 258 IEIA-PIRGFYDFKNKYAAGSAVETCPADLPQETSRLMQKYAADVCKALGLTTYSRQDFL 316

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
            D  S ++F LE N  PGMTP S+ P+  A  G S+ +L
Sbjct: 317 LDE-SGRIFCLEANTLPGMTPTSLLPQEEAVLGMSYDDL 354


>gi|16612079|gb|AAL27442.1|AF430807_7 VanE [Enterococcus faecalis]
          Length = 352

 Score =  151 bits (381), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 103/334 (30%), Positives = 172/334 (51%), Gaps = 49/334 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV------------------DR-- 40
           +A++ GG+SSE EVSL S  A    +E   + V +I +                  DR  
Sbjct: 4   VAIIFGGVSSEYEVSLKSAVAIIKNMESIDYNVMKIGITEEGHWYLFEGTTDKIKKDRWF 63

Query: 41  -------------SVGLVLAH----LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                            VL +    +KPD+ F VLHG +GE+G +Q + ELL+IPY   G
Sbjct: 64  LDESCEEIVVDFAKKSFVLKNSKKIIKPDILFPVLHGGYGENGAMQGVFELLDIPYVGCG 123

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS------PPYVIKPLKGGS 137
           I A+A+SM+K+   Q   + GV   PS+++ +   D Q + +       P  IKP + GS
Sbjct: 124 IGAAAISMNKIMLHQFAEAIGVKSTPSMIIEK-GQDLQKVDAFAKIHGFPLYIKPNEAGS 182

Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI-AVPK 196
           S GI  +++   +   + ++S ++   ++LI++ V G+E+ CG++G+  L V E   +  
Sbjct: 183 SKGISKVERKSDLYKAIDEASKYD--SRILIQKEVKGVEIGCGILGNEQLVVGECDQISL 240

Query: 197 SD-FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255
            D F+ YE KY+ + +  +LPAK+ +D  +++Q  A   ++ +GC+G++R DF       
Sbjct: 241 VDGFFDYEEKYNLVTAEILLPAKLSIDKKEDIQMKAKKLYRLLGCKGLARIDFFLTD-DG 299

Query: 256 KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           ++   EIN  PG T  S FP M    G  ++E++
Sbjct: 300 EILLNEINTMPGFTEHSRFPMMMNEIGMDYKEII 333


>gi|313901574|ref|ZP_07835016.1| D-alanine--D-alanine ligase [Thermaerobacter subterraneus DSM
           13965]
 gi|313468163|gb|EFR63635.1| D-alanine--D-alanine ligase [Thermaerobacter subterraneus DSM
           13965]
          Length = 426

 Score =  151 bits (381), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 89/259 (34%), Positives = 145/259 (55%), Gaps = 14/259 (5%)

Query: 48  HLKP-DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP 106
            L+P D+ F VLHG FGEDG VQ +LEL  IPY  +G++ASA+ MDK   K++  + G+P
Sbjct: 150 RLEPLDVVFPVLHGTFGEDGTVQGLLELAGIPYVGAGVMASAVGMDKAVMKELFRARGLP 209

Query: 107 VCPSILVN--RFTMDSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
           V P ++V   R+  +   ++         P   KP   GSS+GI       ++   L ++
Sbjct: 210 VVPFLVVTAARWRREPAAVLDAIEQSLGYPCFTKPANLGSSVGITRCPDRVALEAGLAEA 269

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMG--DASLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215
            +++   ++++E+ VD  EL   V+G  D    V     P+  FY+Y  KY+   S  ++
Sbjct: 270 FAYDR--KVVVERGVDARELEISVLGNDDPVASVPGEIRPRDAFYTYRAKYTEGGSELIV 327

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275
           PA +P  + +E+QRLA  A QAI   G++R DF  +  + ++   EIN  PG T +S++P
Sbjct: 328 PAPLPPRVVEEMQRLAIAAFQAIDAAGLARVDFFLERATGRLLVNEINTIPGFTVLSMYP 387

Query: 276 EMAAYAGYSFRELLLWMVE 294
           ++   AG  +R+L+  ++E
Sbjct: 388 KLWEAAGLPYRDLITRLIE 406


>gi|182626611|ref|ZP_02954357.1| D-alanine--D-alanine ligase [Clostridium perfringens D str.
           JGS1721]
 gi|177908091|gb|EDT70664.1| D-alanine--D-alanine ligase [Clostridium perfringens D str.
           JGS1721]
          Length = 301

 Score =  151 bits (381), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 96/297 (32%), Positives = 164/297 (55%), Gaps = 9/297 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGGISSERE+S+ SG +   AL+   ++   I ++    L+      D A   LHG
Sbjct: 3   VGVIMGGISSEREISIQSGNSVVHALDKDKYEAIPIVLNEKEDLIEKVKGIDFALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF-TMD 119
            FGEDG VQ++L+ L IP++  G L+SA+ MDK  +K++++   V      +V+    +D
Sbjct: 63  KFGEDGTVQSVLKTLGIPFSGCGPLSSAICMDKDMTKRILAFGNVRTARWEMVSSVDEID 122

Query: 120 SQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            + +  +  P  IKP  GGSS+   +++  +++   +L++  ++   +++IE+Y+ G E+
Sbjct: 123 YEKIENLGYPVFIKPNNGGSSVATTLVESKEAVKDAVLEALKYDT--EVMIEEYIKGDEI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC ++    L V  I  PK  F+    KY    +   +  K+  D++KEV+++A   ++ 
Sbjct: 181 TCPIIDGKMLPVLAIK-PKGKFFDIASKYEDGGADEFI-VKLNEDLHKEVEKMALETYKL 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           + C   +R D L        + LE+N  PGMT  S+FP+ AA    SF ELL  ++E
Sbjct: 239 LKCDVYARVDMLVK--DNIPYVLEVNTLPGMTKNSLFPKSAAGINMSFEELLDTIIE 293


>gi|168218188|ref|ZP_02643813.1| D-alanine--D-alanine ligase [Clostridium perfringens NCTC 8239]
 gi|182379801|gb|EDT77280.1| D-alanine--D-alanine ligase [Clostridium perfringens NCTC 8239]
          Length = 301

 Score =  151 bits (381), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 95/297 (31%), Positives = 165/297 (55%), Gaps = 9/297 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGGISSERE+S+ SG +   AL+   ++   I ++    L+      D A   LHG
Sbjct: 3   VGVIMGGISSEREISIQSGNSVVHALDKDKYEAIPIVLNEKEDLIEKVKGIDFALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF-TMD 119
            FGEDG VQ++L+ L IP++  G L+SA+ MDK  +K++++   V     ++V+    +D
Sbjct: 63  KFGEDGTVQSVLKTLGIPFSGCGPLSSAICMDKDMTKRILAFGNVRTARWLMVSSVDEID 122

Query: 120 SQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            + +  +  P  IKP  GGSS+   +++  +++   +L++  ++   +++IE+Y+ G E+
Sbjct: 123 YEKIENLGYPVFIKPNNGGSSVATTLVESKEAVKDAVLEALKYDT--EVMIEEYIKGDEI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC ++    L V  I  PK  F+    KY    +   +  ++  D++KEV+++A   ++ 
Sbjct: 181 TCPIIDGKMLPVLAIK-PKGKFFDIASKYEDGGADEFI-VELNEDLHKEVEKMALETYKL 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           + C   +R D L        + LE+N  PGMT  S+FP+ AA    SF ELL  ++E
Sbjct: 239 LKCDVYARVDMLVK--DNIPYVLEVNTLPGMTKNSLFPKSAAGINMSFEELLDTIIE 293


>gi|333029727|ref|ZP_08457788.1| D-alanine--D-alanine ligase [Bacteroides coprosuis DSM 18011]
 gi|332740324|gb|EGJ70806.1| D-alanine--D-alanine ligase [Bacteroides coprosuis DSM 18011]
          Length = 326

 Score =  151 bits (381), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 101/326 (30%), Positives = 168/326 (51%), Gaps = 39/326 (11%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGF---------KVSQIDVDRSV--------- 42
           ++++ GG SSE  VSL S +   S ++ + +         KV ++ +D  V         
Sbjct: 6   VSIVAGGDSSELPVSLKSAQGIYSFIDKSRYDLYIVEIQNKVWRVRLDNGVYAPINRHDF 65

Query: 43  -----GLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSK 97
                G V+     D A+  +HG  GEDGL+Q   ELL IPY+  G+LASAL+ DK    
Sbjct: 66  SFEWNGEVITF---DFAYITIHGTPGEDGLLQGYFELLGIPYSSCGVLASALTFDKFVCN 122

Query: 98  QVVSSCGVPVCPSILVNRFT----MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153
           Q +   G+ V  S+++ +      +D    I  P  IKP  GGSS G+  + K++ I   
Sbjct: 123 QYLKGFGMKVAESLMLRKGQSISDVDVVEKIGLPCFIKPNLGGSSFGVSKVTKEEQIQPA 182

Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS----LDVTEIAVPKSDFYSYELKYSSL 209
           +L+  +++   ++LIE ++DG E+TCG    ++      +TE+ V  ++F+ Y+ KY+  
Sbjct: 183 ILK--AFHESSEILIEAFMDGTEITCGCYKTSNKSVVFPITEV-VTHNEFFDYDAKYNG- 238

Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
               + PA++  ++ K VQ L    +  IGC GI R DF+     + +  LE+N  PGMT
Sbjct: 239 QVEEITPARLSDELTKRVQTLTSAIYDIIGCSGIIRVDFIITD-KKVINLLEVNTTPGMT 297

Query: 270 PVSIFPEMAAYAGYSFRELLLWMVED 295
           P S  P+    AG   ++++  ++E+
Sbjct: 298 PTSFIPQQVRAAGLEIQDVMTDIIEN 323


>gi|126699230|ref|YP_001088127.1| putative vancomycin/teicoplanin A-type resistance protein
           [Clostridium difficile 630]
 gi|115250667|emb|CAJ68491.1| D-alanine--D-alanine ligase 2 [Clostridium difficile]
          Length = 366

 Score =  150 bits (380), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 94/258 (36%), Positives = 146/258 (56%), Gaps = 15/258 (5%)

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV 105
           + + K D  F VLHG  GEDG VQ + EL  I     G L+SAL MDK +S ++V S G+
Sbjct: 111 IKYTKLDFVFPVLHGKNGEDGTVQGLFELAGIQVIGCGTLSSALCMDKDKSHKLVHSEGI 170

Query: 106 PVCPSILV---NRFTM-DSQHLISPPYVIKPLKGGSSLGI--IVIKKDQSIPLDLLQSSS 159
            V  SIL+   ++F + +    ++ P  IKP++ GSS GI  I  K++  + +DL    +
Sbjct: 171 KVPKSILLKYSDKFNVAELSKDLTYPLFIKPVRAGSSFGISKIYKKEELQVAVDL----A 226

Query: 160 WNHGDQLLIEQYVDGIELTCGVMGDASL---DVTEIAVPKSDFYSYELKYSSLNSTHVLP 216
           + H ++++IE+ +DG E+ C V+G+  L    V EI + K  F+ Y  KY+  +S   +P
Sbjct: 227 FEHDNEVIIEENIDGFEVGCAVLGNNDLLVGRVDEIELSKG-FFDYTEKYTLKSSKIHMP 285

Query: 217 AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPE 276
           A+I LD  K +Q  A + ++ +GC G +R D    P S ++ + E+N  PG T  S +P 
Sbjct: 286 ARIDLDCEKRIQETAKIIYRTLGCSGFARVDMFLTP-SGEIIFNEVNTIPGFTSHSRYPN 344

Query: 277 MAAYAGYSFRELLLWMVE 294
           M    G SF E+L  ++E
Sbjct: 345 MMKGIGLSFEEILDKIIE 362


>gi|187367112|emb|CAQ51411.1| putative d-ala d-ala ligase [Prosthecobacter debontii]
          Length = 306

 Score =  150 bits (380), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 103/300 (34%), Positives = 157/300 (52%), Gaps = 15/300 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG  +EREVS  + ++  +AL+  G +V ++DV     +V   +   +A N++HG
Sbjct: 9   IAVLFGGPGNEREVSKKTAESVVAALKTKGAEVVEVDVHGPDFVVPEGVF--IAMNLIHG 66

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG +QAILE   IPYT +G+ +S ++ DK  SK+   + GVP   S     + +D 
Sbjct: 67  TFGEDGQIQAILEERGIPYTGAGVQSSRIAFDKALSKEKFIAAGVPTPRS---QNYKLDG 123

Query: 121 QH--LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                I+ P V KP + GSS+G+ + +  +     +    +  +G   L+E+++DG ELT
Sbjct: 124 SEPLSITIPLVSKPPREGSSVGVNICRTGEEWAKGI--EEALKYGTTTLVEEFIDGKELT 181

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST----HVLPAKIPLDIYKEVQRLAFLA 234
            GV+GD  L +  I  P   FY    KY  +  T    +  PA++     K VQ  A  A
Sbjct: 182 VGVLGDQVLPIIHIE-PVEGFYDINNKYPWMTGTGKTLYHCPAELDEATTKRVQDAALAA 240

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            Q+ G     R D +      + F LEIN  PGMT  S+ P+ AA  G  F +L + ++E
Sbjct: 241 FQSCGTEVYGRVDVMLRN-DGEPFVLEINTIPGMTSSSLLPKAAAAVGIDFPDLCVRIIE 299


>gi|83720293|ref|YP_441668.1| D-alanine--D-alanine ligase [Burkholderia thailandensis E264]
 gi|167580475|ref|ZP_02373349.1| D-alanine--D-alanine ligase B [Burkholderia thailandensis TXDOH]
 gi|167618583|ref|ZP_02387214.1| D-alanine--D-alanine ligase B [Burkholderia thailandensis Bt4]
 gi|257137837|ref|ZP_05586099.1| D-alanine--D-alanine ligase [Burkholderia thailandensis E264]
 gi|123537601|sp|Q2SZI1|DDL_BURTA RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|83654118|gb|ABC38181.1| D-alanine--D-alanine ligase B [Burkholderia thailandensis E264]
          Length = 312

 Score =  150 bits (380), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 101/300 (33%), Positives = 157/300 (52%), Gaps = 17/300 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD---LAFNV 57
           +AVL+GG S+ER+VSL+SG+     L DAG      D  +     LA LK +    AFN 
Sbjct: 12  VAVLLGGESAERDVSLNSGRLVLQGLRDAGIDAHPFDPAQRP---LAALKDEGFVRAFNA 68

Query: 58  LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR-- 115
           LHG +GE+G +Q  L+   I YT SG+L SAL +DK R+K V    G+P  P   V R  
Sbjct: 69  LHGGYGENGQIQGALDFYGIRYTGSGVLGSALGLDKFRTKLVWQQTGIPTPPFETVMRGD 128

Query: 116 -FTMDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
            +   ++ +++    P  +KP   GSS+ +  +K   +  L      +  H   +++E+ 
Sbjct: 129 DYAARAKDIVAKLGMPLFVKPASEGSSVAVEKVKSADA--LPAALEEAAKHDKIVIVEKS 186

Query: 172 VD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
           ++ G E T  +  D  L + +I VP  +FY Y  KY + ++ +++P  +      E +R+
Sbjct: 187 IEGGGEYTACIAADLDLPLIKI-VPAGEFYDYHAKYIANDTQYLIPCGLDAAKEAEFKRI 245

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A  A   +GC    R+DF+ D      F LE+N  PGMT  S+ P+ A   G S+ EL++
Sbjct: 246 ARRAFDVLGCTDWGRADFMLDAAGNPYF-LEVNTAPGMTDHSLPPKAARAVGISYSELVV 304


>gi|293189634|ref|ZP_06608351.1| D-alanine--D-alanine ligase [Actinomyces odontolyticus F0309]
 gi|292821372|gb|EFF80314.1| D-alanine--D-alanine ligase [Actinomyces odontolyticus F0309]
          Length = 378

 Score =  150 bits (380), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 88/272 (32%), Positives = 147/272 (54%), Gaps = 19/272 (6%)

Query: 40  RSVGLV-LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQ 98
           R VG+  L H+  D+ F +LHG +GEDG +Q + E+  + Y   G+ +SA+SMDK  +K 
Sbjct: 103 RVVGVEDLGHV--DIVFPLLHGPYGEDGTIQGLFEMAGVRYVGCGVTSSAVSMDKHLTKT 160

Query: 99  VVSSCGVPVCPSILVN--------RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150
           V+++ G+ V    LV            MD    +  P  +KP + GSS+GI  +   + +
Sbjct: 161 VLAAAGIDVGRWELVTARQWDTDATACMDRIEGLGFPVFVKPCRAGSSVGISRVTCREDL 220

Query: 151 PLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS------LDVTEIAVPKSDFYSYEL 204
           P+ + +++  NH  ++++E    G E+ CGV+G  S        + EI +P+ +FY YE 
Sbjct: 221 PVAIKEAA--NHDPRIIVEASTSGREVECGVLGSRSDWRSGTAPLGEIVIPEGEFYDYEH 278

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           KY         PA +  +    ++  A+ A  A+ C G++R DF FD  +  V   E+N 
Sbjct: 279 KYVDDIVGLSCPADVAPEYADRIRATAWRAFDALECEGLARVDFFFDEATDSVIINEVNT 338

Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            PG TP+S++P+M A +G S+ +LL  ++ +A
Sbjct: 339 MPGFTPISMYPQMWAASGLSYSDLLNELLTEA 370


>gi|42527886|ref|NP_972984.1| D-alanyl-alanine synthetase A [Treponema denticola ATCC 35405]
 gi|81411504|sp|Q73JN2|DDL_TREDE RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|41818931|gb|AAS12903.1| D-alanine--D-alanine ligase [Treponema denticola ATCC 35405]
          Length = 368

 Score =  150 bits (380), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 88/303 (29%), Positives = 154/303 (50%), Gaps = 21/303 (6%)

Query: 10  SEREVSLSSGKACASALEDAGFKVSQI---DVDRSVGLVLAHLKPDLAFNVLHGNFGEDG 66
            ERE  + + KA     +D   +V+ I      + +      L  D  F VLHG FGEDG
Sbjct: 51  EERERIIKNEKAVLKIKKDEAKRVTVIPGGGAKKGLKAGDEFLPTDAVFAVLHGRFGEDG 110

Query: 67  LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD------- 119
            +Q + E+ ++PY    ++++++SMDK ++K +    G+P+ P I + R   D       
Sbjct: 111 TIQGLFEMADLPYVGGDVMSTSISMDKEKTKMIWDYSGLPIVPYIAIKRQDWDDPEKKKA 170

Query: 120 ----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175
               ++  +  P  IKP + GSS+G  ++K    +     +S  W+  +++L+E  ++  
Sbjct: 171 ILARAEKDLEYPLFIKPCRAGSSVGAGMVKNRNELLEQAEESFLWD--NKILVEACIEAR 228

Query: 176 ELTCGVMGDASLDVTEIA---VPKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLA 231
           E+ C V G+    V  I    +P   FY YE KY+  N   + +PA +     K ++  A
Sbjct: 229 EVECSVTGNTKT-VAYIPGEIIPTHKFYDYEAKYTDPNGAELKIPADLNETQRKTIRETA 287

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A++A+   G+SR DF  D  + K++  E+N  PG T +S+FP+M   +G  + EL++ 
Sbjct: 288 IKAYEALDLSGLSRVDFFIDKRTGKIYLNEVNTIPGFTAISMFPKMCGASGLPYNELIMH 347

Query: 292 MVE 294
           ++E
Sbjct: 348 LIE 350


>gi|182414453|ref|YP_001819519.1| D-alanine--D-alanine ligase [Opitutus terrae PB90-1]
 gi|177841667|gb|ACB75919.1| D-alanine--D-alanine ligase [Opitutus terrae PB90-1]
          Length = 311

 Score =  150 bits (380), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 104/304 (34%), Positives = 161/304 (52%), Gaps = 19/304 (6%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD--LAFNVL 58
           +AV  GG SSEREVSL SG+ACA+ALE + F+V +  +D     + A L P   + F+ L
Sbjct: 6   IAVFSGGTSSEREVSLGSGQACAAALEKS-FRVERFQIDADA--LPAGLDPQRHVVFSTL 62

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
           HG FGEDG +Q +L+   + Y     ++SAL+MDK  +K+  ++ G+ V P +       
Sbjct: 63  HGTFGEDGGMQRLLDAAGMHYAGCDAVSSALTMDKTLTKETAAAKGIKVIPGVTFPAAKK 122

Query: 119 DSQHLISPPY----VIKPLKGGSSLGIIVIKKDQSIP--LDLLQSSSWNHGDQLLIEQYV 172
                +   +    V+KP   GSS+G+ ++   + +   LD++Q+  W      +IE+ +
Sbjct: 123 PRPEQVIEQFGERVVVKPNAEGSSVGLNLVGSREELTRVLDVIQNGRW------IIERRI 176

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G EL  GV+   ++ V EI  PKS  Y Y  KY+   + ++ PA +   + +++Q  A 
Sbjct: 177 FGRELAVGVLNGRAMGVVEIR-PKSGVYDYASKYTKGMTNYLAPAPLDAALTQKIQAAAQ 235

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
            A  A GCR  +R DF+      +++ LEIN  PGM   S+ P  A   G  F  L+  M
Sbjct: 236 TAFAACGCRDYARVDFILGD-DHELYLLEINTLPGMKETSLLPMSARCEGIDFTALVKAM 294

Query: 293 VEDA 296
           V  A
Sbjct: 295 VTPA 298


>gi|254495422|ref|ZP_05108346.1| D-alanine-D-alanine ligase [Polaribacter sp. MED152]
 gi|85819777|gb|EAQ40934.1| D-alanine-D-alanine ligase [Polaribacter sp. MED152]
          Length = 324

 Score =  150 bits (380), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 98/317 (30%), Positives = 165/317 (52%), Gaps = 34/317 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           +A++MGG SSE ++S+ SG      L+   + V ++ + +   +VL              
Sbjct: 5   IAIIMGGYSSEADISIKSGNVVFQNLDTNKYNVFRVHILKDKWVVLDESNAEYQINKDDF 64

Query: 47  ------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
                  H+K D  FN +HGN GE+G++ + LELL IP+T +     AL+ +K  +  VV
Sbjct: 65  SCVINQNHIKFDCVFNAIHGNPGENGMILSYLELLNIPHTSAPFYQMALTFNKRDTLSVV 124

Query: 101 SSCGVPVCPSILVNR----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
              G+    SI +N+     T + +  +  P  IKP   GSS GI     ++ I   +L+
Sbjct: 125 KEYGIKTAKSIYLNKGDVINTKEIKEKVGLPCFIKPNNAGSSYGISKAYSEEEIFHGILK 184

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDAS----LDVTEIAVPKSDFYSYELKYSSLNST 212
             ++N    +LIE +++G E++ GV+   +    L +TEI V ++DF+ YE KY    S 
Sbjct: 185 --AYNEDSAILIESFLEGTEVSVGVIEYENEIKVLPITEI-VSENDFFDYEAKYEG-KSQ 240

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
            + PA+I     K V+ +A   ++ +   G SR++++F  ++ + ++LEIN  PG+T  S
Sbjct: 241 EITPARITEQQQKRVEEVAQNVYKCLNMSGFSRAEYIF--VNNEPYFLEINTVPGLTEES 298

Query: 273 IFPEMAAYAGYSFRELL 289
           I P+ A  AG S  +L 
Sbjct: 299 ILPQQAKEAGISLAQLF 315


>gi|254448997|ref|ZP_05062451.1| D-alanine--D-alanine ligase [gamma proteobacterium HTCC5015]
 gi|198261391|gb|EDY85682.1| D-alanine--D-alanine ligase [gamma proteobacterium HTCC5015]
          Length = 310

 Score =  150 bits (380), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 99/301 (32%), Positives = 155/301 (51%), Gaps = 11/301 (3%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62
           +L GG ++EREVSL SG AC +ALE +  + + +D      L L+    D A NV+HG  
Sbjct: 16  LLKGGWAAEREVSLVSGAACEAALERSNIEFTSVDASPEAILQLSAQNFDRALNVVHGRG 75

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV--PVCPSILVNRFTMDS 120
           GEDG +QA L L  IP + S +L SAL+MDK+R+K + +  G+  P+   I      +  
Sbjct: 76  GEDGQLQAALSLAGIPCSGSDVLGSALAMDKLRTKYLWAGAGLPTPLYRQIGSVEEALSV 135

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P ++KP   GSS+G+  +   + +      ++ +    ++  EQ++ G E T  
Sbjct: 136 AEELGLPLMVKPALEGSSIGMSKVNDVEDMAAAYELAAQYG---EVFAEQWIVGKEYTAA 192

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           ++GD +L +  +   + DFY Y  KY   ++ +  P  +     + +Q LA  A   +G 
Sbjct: 193 ILGDETLPLVRLETDQ-DFYDYAAKYERNDTRYHCPCGLDDTAERNLQHLAQQAFDTVGA 251

Query: 241 RGISRSDFLFDPLSRKVFWL-EINVQPGMTPVSIFPEMAAYAGYSFRELLL--WMVEDAS 297
            G  R D + D   +   WL E+N  PGMT  S+ P  A  AG SF EL+L   M  + +
Sbjct: 252 SGWGRVDLMVDEAGQP--WLIEVNTVPGMTDHSLVPMAAKQAGMSFDELVLRILMTAEEA 309

Query: 298 C 298
           C
Sbjct: 310 C 310


>gi|116493050|ref|YP_804785.1| D-alanine--D-alanine ligase [Pediococcus pentosaceus ATCC 25745]
 gi|122265486|sp|Q03EM9|DDL_PEDPA RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|116103200|gb|ABJ68343.1| D-alanine--D-alanine ligase [Pediococcus pentosaceus ATCC 25745]
          Length = 351

 Score =  150 bits (379), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 104/337 (30%), Positives = 165/337 (48%), Gaps = 54/337 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------------------- 38
           +AVL GG S+ER VSLSSG    +AL   G+  + ID+                      
Sbjct: 3   IAVLAGGKSTERNVSLSSGSKITNALRSKGYDATMIDLFLGYELEDGQSYEDVFKSSNTS 62

Query: 39  --------------------DRSVGLVLAHLKP-----DLAFNVLHGNFGEDGLVQAILE 73
                               D +VGL   ++ P     D  F  LHG  GE+G VQA+L+
Sbjct: 63  TDYEISDAVLTEEDIEELRTDGTVGLFGKNVLPILQAADFVFLALHGGDGENGKVQAVLD 122

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-SILVNRFTMDSQHLISPPYVIKP 132
           L  I YT SG LAS ++MDK  SK+++    +     ++L  +  +  Q     P V+KP
Sbjct: 123 LNHIKYTGSGSLASGIAMDKAISKEIMLYNNIKTAQFAVLHAKDGIHPQLAFDYPMVVKP 182

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192
             GGSS+G  ++  +  +   L    ++   D++++E+++ G E + GV+   ++   EI
Sbjct: 183 NSGGSSIGTRIVHDEAELAESL--KDAYRFDDEIIVEEFITGREFSLGVVNGQAMPAIEI 240

Query: 193 AVPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
            V    +Y YE K+ + ++T  V P +I  D++ E++R+A     A+G     R DFL +
Sbjct: 241 VVNDG-WYDYEHKFQTGSTTKFVTPPEIEDDVHDEMKRVAVQTMDALGMTNYGRVDFLTN 299

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
                V+ +E N  PGMTP+S+ P+ A  AG S+ +L
Sbjct: 300 DTG--VYVIEANNLPGMTPLSLLPQEAEAAGISYEDL 334


>gi|320095097|ref|ZP_08026806.1| D-alanine-D-alanine ligase [Actinomyces sp. oral taxon 178 str.
           F0338]
 gi|319977964|gb|EFW09598.1| D-alanine-D-alanine ligase [Actinomyces sp. oral taxon 178 str.
           F0338]
          Length = 323

 Score =  150 bits (379), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 90/297 (30%), Positives = 166/297 (55%), Gaps = 17/297 (5%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62
           ++ GG++ ER+VS+ SG+  A+ L  AGF V   DV+ ++   +A  +P++ + ++HG+ 
Sbjct: 9   IIAGGLTHERDVSVRSGRRVANILTRAGFVVRITDVNDTLVSTIASFQPNVVWPLVHGSI 68

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV-----CPSILVNRFT 117
           GEDG +Q +LE L IP+  S  + S L+ +K  +K +++S G+P       P  L  +  
Sbjct: 69  GEDGSLQTLLESLGIPFVGSASVQSMLASNKPTAKALLASAGMPTPGWFSLPQALFRQVG 128

Query: 118 MDS-----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
             +     +H +S P VIKP  GGS+LG+      + +   ++   ++ +G +L++EQ +
Sbjct: 129 ATNVLSAIEHGVSFPVVIKPTDGGSALGLSTAHNAEELRTAMVD--AFAYGQKLMVEQRI 186

Query: 173 DGIELTCGV--MGDASLDVTEIAVPK-SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           DG ++   V  +GD  + +  + +      Y Y+ +Y++  + + +PA++  +   +++ 
Sbjct: 187 DGRDVAVSVVDLGDGPIALPPVEISTDGGRYDYDARYTTDETEYFVPARLESNALADLRA 246

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYA-GYSF 285
            A  AH A+G R +SR DF+ D      ++++ NV PGMT  S+ P+ A  A  YSF
Sbjct: 247 AAIEAHTALGLRHLSRIDFVIDE-DGTCWFIDANVAPGMTDTSLLPQAAEAADDYSF 302


>gi|332653072|ref|ZP_08418817.1| D-alanine--D-alanine ligase [Ruminococcaceae bacterium D16]
 gi|332518218|gb|EGJ47821.1| D-alanine--D-alanine ligase [Ruminococcaceae bacterium D16]
          Length = 349

 Score =  150 bits (379), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 116/352 (32%), Positives = 167/352 (47%), Gaps = 63/352 (17%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-------DRSV----------- 42
           + VL GG+S ER VSLSSG     AL   G KV+ +D+       DR+V           
Sbjct: 3   IVVLAGGLSPERNVSLSSGAMVCEALRSKGHKVALMDLFFGVEGTDRTVDPFEAPIPQAF 62

Query: 43  ---------------------------GLVLAHLKPDLAFNVLHGNFGEDGLVQAILELL 75
                                      G++    + D+ +  LHG  GEDG +QA L+LL
Sbjct: 63  KKVSPEAPDLVQVRASRKDTSPSAIGQGVLELCAQADVVYLALHGACGEDGRIQATLDLL 122

Query: 76  EIPYTHSGILASALSMDKMRSKQVV-------SSCGVPVCPSILVNRFTMDSQHLISPPY 128
            +PYT SG L SA++MDK  +K++V       S C V V    L     M+   L   P 
Sbjct: 123 GVPYTGSGCLGSAIAMDKDMTKRLVAHKVRTPSWCTVTVTEENLEQ--LMEETKL---PV 177

Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD 188
           V+KP+  GSS+G+ +      +   L    S   G + ++EQYV G E+   V+   +L 
Sbjct: 178 VVKPIASGSSIGVTIAHTKDDLRRGL--EESIRLGGRTVLEQYVKGREIQVAVLNGKALP 235

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
             EI +P++DFY Y  KY    +  V PA+IP +  K+V   A    + +G    SR+DF
Sbjct: 236 SIEI-IPQADFYDYANKYQPGAAREVCPAEIPPEWEKKVGDAAVAVFEELGLSVYSRADF 294

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           +      + ++LEIN  PGMTP S+ P+ AA  G  +  L   +V  AS L+
Sbjct: 295 IVTE-DGEAYFLEINTLPGMTPTSLVPQEAAAVGMDYATLCETIV--ASSLK 343


>gi|126441025|ref|YP_001060533.1| D-alanine--D-alanine ligase [Burkholderia pseudomallei 668]
 gi|190359123|sp|A3NDW2|DDL_BURP6 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|126220518|gb|ABN84024.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei 668]
          Length = 312

 Score =  150 bits (379), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 102/300 (34%), Positives = 154/300 (51%), Gaps = 17/300 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD---LAFNV 57
           +AVL+GG S+EREVSL+SG+     L DAG      D  +     LA LK +    AFN 
Sbjct: 12  VAVLLGGDSAEREVSLNSGRLVLQGLRDAGIDAHPFDPAQRP---LAALKDEGFVRAFNA 68

Query: 58  LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR-- 115
           LHG +GE+G +Q  L+   I YT SG+L SAL +DK R+K V    G+P  P   V R  
Sbjct: 69  LHGGYGENGQIQGALDFYGIRYTGSGVLGSALGLDKFRTKLVWQQTGIPTPPFETVMRGD 128

Query: 116 -FTMDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
            +   +Q + +    P  +KP   GSS+ +  +K   +  L      +  H   +++E+ 
Sbjct: 129 DYAARAQDIAAKLGVPLFVKPASEGSSVAVEKVKSADA--LPAALEEAAKHDKIVIVEKS 186

Query: 172 VD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
           ++ G E T  +  D  L +  I VP  +FY Y  KY + ++ +++P  +      E +R+
Sbjct: 187 IEGGGEYTACIAADLDLPLIRI-VPAGEFYDYHAKYIANDTQYLIPCGLDAAKEAEFKRI 245

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A  A   +GC    R+DF+ D      F LE+N  PGMT  S+ P+ A   G  + EL++
Sbjct: 246 ARRAFDVLGCTDWGRADFMLDAAGNPYF-LEVNTAPGMTDHSLPPKAARAVGIGYSELVV 304


>gi|328947388|ref|YP_004364725.1| D-alanine--D-alanine ligase [Treponema succinifaciens DSM 2489]
 gi|328447712|gb|AEB13428.1| D-alanine--D-alanine ligase [Treponema succinifaciens DSM 2489]
          Length = 376

 Score =  150 bits (379), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 82/269 (30%), Positives = 144/269 (53%), Gaps = 26/269 (9%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+ F VLHG +GEDG VQ + E+  +P+   G+LAS+ +MDK  +K ++ + G+PV P +
Sbjct: 96  DVVFPVLHGTYGEDGTVQGVFEMAGVPFVGCGVLASSAAMDKETTKILLKNAGIPVVPYM 155

Query: 112 LVNRFTMDSQHLISP-----------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160
            ++R  ++S  L              P  +KP   GSS G  + +  + +   L+++ SW
Sbjct: 156 CISRSQINSSSLYDKLIEEAIEKLEFPLFVKPCAAGSSDGASLARNKRELSFALMEAFSW 215

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEI------------AVPKSDFYSYELKYSS 208
           ++  ++LIE+ +D  E+ C V G++    +E              VPK DFY Y+ KY+ 
Sbjct: 216 DN--KVLIEKAIDAREVECSVTGNSVTATSESDCTLLKAYGPGEIVPKHDFYDYDAKYND 273

Query: 209 LNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPG 267
            +   + +PA +  D  + ++  A  A+  I   G+SR DF  D  + +++  EIN  PG
Sbjct: 274 PDGAELKIPALLSDDKLELIRETAKKAYSVINASGLSRVDFFVDRKTGEIYLNEINTIPG 333

Query: 268 MTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            T +S+FP+M    G  + EL+ +++++ 
Sbjct: 334 FTKISMFPKMCDADGLEYSELIDYLLKEG 362


>gi|167036618|ref|YP_001664196.1| D-alanyl-alanine synthetase A [Thermoanaerobacter pseudethanolicus
           ATCC 33223]
 gi|167039269|ref|YP_001662254.1| D-alanyl-alanine synthetase A [Thermoanaerobacter sp. X514]
 gi|300913909|ref|ZP_07131226.1| D-alanine/D-alanine ligase [Thermoanaerobacter sp. X561]
 gi|307725406|ref|YP_003905157.1| D-alanine/D-alanine ligase [Thermoanaerobacter sp. X513]
 gi|320115045|ref|YP_004185204.1| D-alanine/D-alanine ligase [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
 gi|190359215|sp|B0KBI1|DDL_THEP3 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|190359216|sp|B0K485|DDL_THEPX RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|166853509|gb|ABY91918.1| D-alanine--D-alanine ligase [Thermoanaerobacter sp. X514]
 gi|166855452|gb|ABY93860.1| D-alanine--D-alanine ligase [Thermoanaerobacter pseudethanolicus
           ATCC 33223]
 gi|300890594|gb|EFK85739.1| D-alanine/D-alanine ligase [Thermoanaerobacter sp. X561]
 gi|307582467|gb|ADN55866.1| D-alanine/D-alanine ligase [Thermoanaerobacter sp. X513]
 gi|319928136|gb|ADV78821.1| D-alanine/D-alanine ligase [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
          Length = 359

 Score =  150 bits (379), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 105/340 (30%), Positives = 179/340 (52%), Gaps = 55/340 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS---------VG-------- 43
           +AVL GG S E EVSL S K+  + L+   +++  + + +          VG        
Sbjct: 6   IAVLFGGQSGEHEVSLMSAKSIINNLDKDKYEIYMVGITKKGEWYLYRGDVGKIETGEWE 65

Query: 44  ------LVLAHLKP----------------DLAFNVLHGNFGEDGLVQAILELLEIPYTH 81
                 ++ A  K                 D+ F VLHG  GEDG +Q +LELL++PY  
Sbjct: 66  KEGIPAIMGASTKYRGIITFEDGENGFYPIDVVFPVLHGPNGEDGTIQGLLELLDMPYVG 125

Query: 82  SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--------QHLISPPYVIKPL 133
           + +L+SAL MDK+ +K++    G+P    ++V    ++         +HL  P +V KP 
Sbjct: 126 ANVLSSALCMDKVFTKRIFKEAGLPTPDFVVVYGKEIEDLEAIKKKIEHLGYPCFV-KPA 184

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT--- 190
             GSS+GI  +  ++ +P  L  ++ ++   +LLIE+ +D  E+ C V+G+ + + +   
Sbjct: 185 NLGSSVGITKVHNEEELPGALKLAAKYDR--KLLIERGIDAREIECSVLGNENPEASIAG 242

Query: 191 EIAVPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
           EI VP ++FY Y  KY     S  ++PA +P +  +EV++LA  A++A+  RG++R DFL
Sbjct: 243 EI-VPSNEFYDYNAKYFDGGKSLLLIPAPLPDEKMEEVRKLAIKAYKALDLRGMARVDFL 301

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
            D  +  ++  E+N  PG T +S++P++   +G S+  LL
Sbjct: 302 MDRNTGTLYLNEVNTIPGFTKISMYPKLWESSGKSYSTLL 341


>gi|255100754|ref|ZP_05329731.1| putative D-alanine:D-alanine ligase (putative
           vancomycin/teicoplanin A-type resistance protein)
           [Clostridium difficile QCD-63q42]
          Length = 366

 Score =  150 bits (379), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 94/258 (36%), Positives = 146/258 (56%), Gaps = 15/258 (5%)

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV 105
           + + K D  F VLHG  GEDG VQ + EL  I     G L+SAL MDK +S ++V S G+
Sbjct: 111 IKYTKLDFVFPVLHGKNGEDGTVQGLFELAGIQVIGCGTLSSALCMDKDKSHKLVHSEGI 170

Query: 106 PVCPSILV---NRFTM-DSQHLISPPYVIKPLKGGSSLGI--IVIKKDQSIPLDLLQSSS 159
            V  SIL+   ++F + +    ++ P  IKP++ GSS GI  I  K++  + +DL    +
Sbjct: 171 KVPKSILLKYSDKFNVAELSKDLTYPLFIKPVRAGSSFGISKIYKKEELQVAVDL----A 226

Query: 160 WNHGDQLLIEQYVDGIELTCGVMGDASL---DVTEIAVPKSDFYSYELKYSSLNSTHVLP 216
           + H ++++IE+ +DG E+ C V+G+  L    V EI + K  F+ Y  KY+  +S   +P
Sbjct: 227 FEHDNEVIIEENIDGFEVGCAVLGNNDLLVGRVDEIELSKG-FFDYTEKYTLKSSKIHMP 285

Query: 217 AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPE 276
           A+I LD  K +Q  A + ++ +GC G +R D    P S ++ + E+N  PG T  S +P 
Sbjct: 286 ARIDLDCEKRIQETAKIIYRTLGCSGFARVDMFLTP-SGEIIFNEVNTIPGFTSHSRYPN 344

Query: 277 MAAYAGYSFRELLLWMVE 294
           M    G SF E+L  ++E
Sbjct: 345 MMKGIGLSFEEILDKIIE 362


>gi|257486598|ref|ZP_05640639.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. tabaci ATCC
           11528]
 gi|331010080|gb|EGH90136.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. tabaci ATCC
           11528]
          Length = 363

 Score =  150 bits (379), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 99/343 (28%), Positives = 175/343 (51%), Gaps = 53/343 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------------------- 40
           +A++ GG SSE EVSL S +   +A++   + ++ I VD+                    
Sbjct: 5   VAIVFGGQSSEHEVSLQSARNVINAIDRERYTLTLIGVDKLGRWLRFDEADYLLNANDPA 64

Query: 41  -----SVGLVLAHL--------------KP----DLAFNVLHGNFGEDGLVQAILELLEI 77
                + G  L+ L              KP    D+ F ++HG FGEDG +Q +L +L +
Sbjct: 65  RIKLSASGKQLSLLPGSTGGQFVEVETGKPLAAIDVVFPLIHGAFGEDGALQGVLRMLAV 124

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM----DSQHLISPPYVIKPL 133
           P+  + +LASA  MDK  +K+++   G+ V P + ++R       D+   +  P  +KP 
Sbjct: 125 PFVGADVLASAACMDKDVTKRLLRDAGIAVAPFMGLSRGETLSFADAATQLGLPMFVKPA 184

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG--DASLDVTE 191
             GSS+G+  +  +      L     ++H  +LLIEQ + G E+ C V+G  DA + V  
Sbjct: 185 NQGSSVGVSKVSDEAGFVAALALGFEFDH--KLLIEQGIVGREVECAVLGNFDAQVSVCG 242

Query: 192 IAVPKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
             +   +FY+Y+ KY + +   + +PA+ P D+  +V+ +A  A++ +GC G+SR DF F
Sbjct: 243 EVIANDEFYAYDTKYLNGDQARIAIPAEFPADLSDQVREVALQAYKVLGCAGLSRVDF-F 301

Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
              +R +   E+N  PG T +S++P++   +G ++ EL+  ++
Sbjct: 302 VTDTRDIIINEVNTLPGFTSISMYPKLWQASGLTYAELIHRLI 344


>gi|118617561|ref|YP_905893.1| D-alanyl-alanine synthetase A [Mycobacterium ulcerans Agy99]
 gi|166198494|sp|A0PQ03|DDL_MYCUA RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|118569671|gb|ABL04422.1| d-alanine--D-alanine ligase DdlA [Mycobacterium ulcerans Agy99]
          Length = 373

 Score =  150 bits (379), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 93/268 (34%), Positives = 152/268 (56%), Gaps = 20/268 (7%)

Query: 43  GLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS 102
           G VLA +  D+ F VLHG +GEDG +Q +LEL  +PY  +G+LASA  MDK  +K++ S+
Sbjct: 104 GEVLASV--DVVFPVLHGPYGEDGTIQGLLELAGVPYVGAGVLASAAGMDKEFTKKLWSA 161

Query: 103 CGVPVCPSILV--NRFTMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS 158
            G+P+ P  ++  +R ++D + L  +  P  +KP +GGSS+G+  +     +P  +  ++
Sbjct: 162 AGLPIGPHAVLRPSRQSLDREELQRLGLPAYVKPARGGSSIGVSRVSSFDELPAAI--AA 219

Query: 159 SWNHGDQLLIEQYVDGIELTCGVMG--DASLDVT---EIAVP-----KSDFYSYELKYSS 208
           +  H  ++++E  ++G EL CGV+   D  L+ +   EI V      +  FY +E KY  
Sbjct: 220 ARRHDPKVIVEAAINGRELECGVLEFPDGRLEASTLGEIRVAGVRGREDGFYDFETKYLD 279

Query: 209 LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268
             +   +PAK+  D+   V++LA  A +AI C+G++R DF        +   E+N  PG 
Sbjct: 280 DAAELDVPAKVEDDVADAVRQLAIRAFEAIDCQGLARVDFFLTDDGPVIN--ELNTMPGF 337

Query: 269 TPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           T +S++P M   +G  +  LL  MVE A
Sbjct: 338 TTISMYPRMWVASGVDYPTLLATMVETA 365


>gi|148244843|ref|YP_001219537.1| D-alanine-D-alanine ligase B [Candidatus Vesicomyosocius okutanii
           HA]
 gi|190359219|sp|A5CW55|DDL_VESOH RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|146326670|dbj|BAF61813.1| D-alanine-D-alanine ligase B [Candidatus Vesicomyosocius okutanii
           HA]
          Length = 293

 Score =  150 bits (379), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 105/294 (35%), Positives = 148/294 (50%), Gaps = 14/294 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +A+LMGG S+ER +SL SG+A    L +        D            + D  F +LHG
Sbjct: 2   IAILMGGNSAERAISLKSGEAIYQTLNNQNIDCFTFDWYGDNLSEFWQQEFDQVFIILHG 61

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q  LE   I YT S   AS  SMDK R+K +     + + PSI+ N   +D 
Sbjct: 62  RGGEDGYIQKQLENRGICYTGSDSNASHNSMDKARTKIIWEQHSLTLAPSIIAN---IDQ 118

Query: 121 QHLISP-----PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175
              I+P     P+ +KP   GSS+GI   K D  + L+     +W +    LIEQ++ G 
Sbjct: 119 P--INPINFPLPWAVKPTLEGSSIGI--SKVDNQMQLNDALMLAWQYAPYALIEQWIKGD 174

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
           E T  ++GD +L V  I +   +FY YE KY S  + ++ P  + L   K +Q +A  A 
Sbjct: 175 EYTVAILGDKALPVVRI-ITDQNFYDYESKYHSNKTQYLCPCNLSLTQEKALQAIALKAF 233

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
            AI  +G  R DF+ +    K + LEIN  PGMT  S+ P  A   G SF +L+
Sbjct: 234 FAINAKGWGRVDFIINQ-HNKPYLLEINTVPGMTSHSLVPMAAKAIGISFNKLV 286


>gi|46199525|ref|YP_005192.1| D-alanine-D-alanine ligase [Thermus thermophilus HB27]
 gi|81405628|sp|Q72IA9|DDL_THET2 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|46197151|gb|AAS81565.1| D-alanine-D-alanine ligase [Thermus thermophilus HB27]
          Length = 319

 Score =  150 bits (379), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 88/248 (35%), Positives = 142/248 (57%), Gaps = 8/248 (3%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+ F +LHG FGEDG VQ  LELL  PY  +G+ ASAL MDK  SK+V++  GVPV P +
Sbjct: 75  DVVFPLLHGRFGEDGTVQGFLELLGKPYVGAGVAASALCMDKDLSKRVLAQAGVPVVPWV 134

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
            V +    S     PP+ +KP   GSS+GI  +++ Q   L+   + ++ + ++ ++E+ 
Sbjct: 135 AVRK-GEPSMVPFDPPFFVKPANTGSSVGISRVERFQD--LEAALALAFRYDEKAVVEKA 191

Query: 172 VDGI-ELTCGVMGDASLDVTEIAVPKSD--FYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           +  + EL  GV+G+   + + +   + +  FY YE KY+   +  ++PA +     + VQ
Sbjct: 192 LSPVRELEVGVLGNVFGEASPVGEVRYEAPFYDYETKYTPGRAELLIPAPLDPGTQETVQ 251

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
            LA  A++ +G RG++R DF       +V+  E+N  PG TP S++P +    G ++ EL
Sbjct: 252 ELALKAYKVLGVRGMARVDFFL--AEGEVYLNELNTIPGFTPTSMYPRLFEAGGVAYPEL 309

Query: 289 LLWMVEDA 296
           L  +VE A
Sbjct: 310 LRRLVELA 317


>gi|298528065|ref|ZP_07015469.1| D-alanine/D-alanine ligase [Desulfonatronospira thiodismutans
           ASO3-1]
 gi|298511717|gb|EFI35619.1| D-alanine/D-alanine ligase [Desulfonatronospira thiodismutans
           ASO3-1]
          Length = 300

 Score =  150 bits (379), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 99/296 (33%), Positives = 154/296 (52%), Gaps = 9/296 (3%)

Query: 1   MAVLM--GGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVG-LVLAHLKPDLAFNV 57
           M VL+  GG S ER+VSL+       AL+  G +V  +D+      LV    + D A   
Sbjct: 1   MRVLLIAGGWSKERQVSLNGAAQIKEALKSLGHEVLFLDLSPDYQELVNKAREADAAIIN 60

Query: 58  LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117
           LHG  GEDG +Q +LE + +PY  SG+  S L+++K  SKQ  ++ G+      L   F 
Sbjct: 61  LHGAPGEDGSIQGVLEDVGLPYQGSGVRGSFLALNKALSKQFYANHGLRTPKGGLY--FP 118

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
               H + PP + KP +GGSSL + +    + +   L Q  S +   ++L+E+ ++G E+
Sbjct: 119 QGRLHHVPPPVICKPNQGGSSLDMQIFYNQEEMYSFLNQVDSEH---EILVEELINGHEV 175

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           +C V+ +  L    I   K DF+ Y  KY    +  + PA I  +  + +Q ++  AH+ 
Sbjct: 176 SCAVLDNEPLPPILIQPVKGDFFDYNSKYDPDGAVEICPAPISQEASRSIQEMSLQAHRI 235

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +G R  SRSDF+ D     ++ LE N  PGMT  S+ P+ A  AG  F EL+  ++
Sbjct: 236 LGLRHYSRSDFMLD-QQDNIYILETNTLPGMTRTSLVPKAAQQAGIGFTELIARLL 290


>gi|228921296|ref|ZP_04084622.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|229190695|ref|ZP_04317691.1| D-alanine--D-alanine ligase [Bacillus cereus ATCC 10876]
 gi|228592828|gb|EEK50651.1| D-alanine--D-alanine ligase [Bacillus cereus ATCC 10876]
 gi|228838355|gb|EEM83670.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 304

 Score =  150 bits (378), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 96/305 (31%), Positives = 168/305 (55%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGG+SSE++VS+ +G    + L+   +++  I ++  V L+      D A   LHG
Sbjct: 3   IGVIMGGVSSEKQVSIMTGNEMIAHLDKNKYEIVPITLNEKVDLIEKAKDIDFALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---FT 117
            +GEDG VQ  LE L IPY+ S +L+S++ MDK  SK+++   GV     I + +     
Sbjct: 63  KYGEDGTVQGTLESLGIPYSGSNMLSSSICMDKNISKKILRYEGVETPDWIELTKMEDLN 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGI-IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
           +D    +  P V+KP  GGSS+G+ IV  K++ I + L     W+   +++IE+Y+ G E
Sbjct: 123 LDELDKLGFPLVVKPNSGGSSVGVKIVYNKNELISM-LETVFEWDS--EVVIEKYIKGDE 179

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +TC ++    L +  I    ++F+ Y  KY   ++   +  ++P +I + V + +   ++
Sbjct: 180 ITCSILDGKQLPIVSIR-HAAEFFDYNAKYDDTSTVEEV-IELPAEINERVNKASLACYK 237

Query: 237 AIGCRGISRSDFLF-DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           A+ C   +R D +  D +    + +EIN  PGMT  S+ P+ A  AG S+ +LL  ++E 
Sbjct: 238 ALKCSVYARVDMMVKDGIP---YVMEINTLPGMTQSSLLPKSAEAAGISYSKLLDMIIET 294

Query: 296 ASCLR 300
           +  +R
Sbjct: 295 SLKVR 299


>gi|229150808|ref|ZP_04279020.1| D-alanine--D-alanine ligase [Bacillus cereus m1550]
 gi|228632597|gb|EEK89214.1| D-alanine--D-alanine ligase [Bacillus cereus m1550]
          Length = 304

 Score =  150 bits (378), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 96/305 (31%), Positives = 168/305 (55%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGG+SSE++VS+ +G    + L+   +++  I ++  V L+      D A   LHG
Sbjct: 3   IGVIMGGVSSEKQVSIMTGNEMIAHLDKNKYEIVPITLNEKVDLIEKAKDIDFALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---FT 117
            +GEDG VQ  LE L IPY+ S +L+S++ MDK  SK+++   GV     I + +     
Sbjct: 63  KYGEDGTVQGTLESLGIPYSGSNMLSSSICMDKNISKKILRYEGVETPDWIELTKMEDLN 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGI-IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
           +D    +  P V+KP  GGSS+G+ IV  K++ I + L     W+   +++IE+Y+ G E
Sbjct: 123 LDELDKLGFPLVVKPNSGGSSVGVKIVYNKNELISM-LETVFEWDS--EVVIEKYIKGDE 179

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +TC ++    L +  I    ++F+ Y  KY   ++   +  ++P +I + V + +   ++
Sbjct: 180 ITCSILDGKQLPIVSIR-HAAEFFDYNAKYDDTSTVEEV-IELPAEIKERVNKASLACYK 237

Query: 237 AIGCRGISRSDFLF-DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           A+ C   +R D +  D +    + +EIN  PGMT  S+ P+ A  AG S+ +LL  ++E 
Sbjct: 238 ALKCSVYARVDMMVKDGIP---YVMEINTLPGMTQSSLLPKSAEAAGISYSKLLDMIIET 294

Query: 296 ASCLR 300
           +  +R
Sbjct: 295 SLKVR 299


>gi|218233071|ref|YP_002367292.1| D-alanine--D-alanine ligase [Bacillus cereus B4264]
 gi|229145195|ref|ZP_04273586.1| D-alanine--D-alanine ligase [Bacillus cereus BDRD-ST24]
 gi|296503144|ref|YP_003664844.1| D-alanine--D-alanine ligase [Bacillus thuringiensis BMB171]
 gi|218161028|gb|ACK61020.1| D-alanine--D-alanine ligase [Bacillus cereus B4264]
 gi|228638282|gb|EEK94721.1| D-alanine--D-alanine ligase [Bacillus cereus BDRD-ST24]
 gi|296324196|gb|ADH07124.1| D-alanine--D-alanine ligase [Bacillus thuringiensis BMB171]
          Length = 304

 Score =  150 bits (378), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 96/305 (31%), Positives = 168/305 (55%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGG+SSE++VS+ +G    + L+   +++  I ++  + LV      D A   LHG
Sbjct: 3   IGVIMGGVSSEKQVSIMTGNEMIAHLDKNKYEIVPITLNEKIDLVEKAKDIDFALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---FT 117
            +GEDG VQ  LE L IPY+ S +L+S++ MDK  SK+++   GV     I + +     
Sbjct: 63  KYGEDGTVQGTLESLGIPYSGSNMLSSSICMDKNISKKILRYEGVETPDWIELTKMEDLN 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGI-IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
           +D    +  P V+KP  GGSS+G+ IV  K++ I + L     W+   +++IE+Y+ G E
Sbjct: 123 LDELDKLGFPLVVKPNSGGSSVGVKIVYNKNELISM-LETVFEWDS--EVVIEKYIKGDE 179

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +TC ++    L +  I    ++F+ Y  KY   ++   +  ++P +I + V + +   ++
Sbjct: 180 ITCSILDGKQLPIVSIR-HAAEFFDYNAKYDDTSTVEEV-IELPAEIKERVNKASLACYK 237

Query: 237 AIGCRGISRSDFLF-DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           A+ C   +R D +  D +    + +EIN  PGMT  S+ P+ A  AG S+ +LL  ++E 
Sbjct: 238 ALKCSVYARVDMMVKDGIP---YVMEINTLPGMTQSSLLPKSAEAAGISYSKLLDMIIET 294

Query: 296 ASCLR 300
           +  +R
Sbjct: 295 SLKVR 299


>gi|254975259|ref|ZP_05271731.1| putative D-alanine:D-alanine ligase (putative
           vancomycin/teicoplanin A-type resistance protein)
           [Clostridium difficile QCD-66c26]
 gi|255092649|ref|ZP_05322127.1| putative D-alanine:D-alanine ligase (putative
           vancomycin/teicoplanin A-type resistance protein)
           [Clostridium difficile CIP 107932]
 gi|255314386|ref|ZP_05355969.1| putative D-alanine:D-alanine ligase (putative
           vancomycin/teicoplanin A-type resistance protein)
           [Clostridium difficile QCD-76w55]
 gi|255517064|ref|ZP_05384740.1| putative D-alanine:D-alanine ligase (putative
           vancomycin/teicoplanin A-type resistance protein)
           [Clostridium difficile QCD-97b34]
 gi|255650168|ref|ZP_05397070.1| putative D-alanine:D-alanine ligase (putative
           vancomycin/teicoplanin A-type resistance protein)
           [Clostridium difficile QCD-37x79]
 gi|260683291|ref|YP_003214576.1| putative D-alanine:D-alanine ligase [Clostridium difficile CD196]
 gi|260686887|ref|YP_003218020.1| putative vancomycin/teicoplanin A-type resistance protein
           [Clostridium difficile R20291]
 gi|260209454|emb|CBA62964.1| putative D-alanine:D-alanine ligase (putative
           vancomycin/teicoplanin A-type resistance protein)
           [Clostridium difficile CD196]
 gi|260212903|emb|CBE04146.1| putative D-alanine:D-alanine ligase (putative
           vancomycin/teicoplanin A-type resistance protein)
           [Clostridium difficile R20291]
          Length = 366

 Score =  150 bits (378), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 94/258 (36%), Positives = 146/258 (56%), Gaps = 15/258 (5%)

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV 105
           + + K D  F VLHG  GEDG VQ + EL  I     G L+SAL MDK +S ++V S G+
Sbjct: 111 IKYTKLDFVFPVLHGKNGEDGTVQGLFELAGIQVIGCGTLSSALCMDKDKSHKLVHSEGI 170

Query: 106 PVCPSILV---NRFTM-DSQHLISPPYVIKPLKGGSSLGI--IVIKKDQSIPLDLLQSSS 159
            V  SIL+   ++F + +    ++ P  IKP++ GSS GI  I  K++  + +DL    +
Sbjct: 171 KVPKSILLKYSDKFNVAELSKDLTYPLFIKPVRAGSSFGISKIYKKEELQVAVDL----A 226

Query: 160 WNHGDQLLIEQYVDGIELTCGVMGDASL---DVTEIAVPKSDFYSYELKYSSLNSTHVLP 216
           + H ++++IE+ +DG E+ C V+G+  L    V EI + K  F+ Y  KY+  +S   +P
Sbjct: 227 FEHDNEVIIEENIDGFEVGCAVLGNDDLLVGRVDEIELSKG-FFDYTEKYTLKSSKIHMP 285

Query: 217 AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPE 276
           A+I LD  K +Q  A + ++ +GC G +R D    P S ++ + E+N  PG T  S +P 
Sbjct: 286 ARIDLDCEKRIQETAKIIYRTLGCSGFARVDMFLTP-SGEIIFNEVNTIPGFTSHSRYPN 344

Query: 277 MAAYAGYSFRELLLWMVE 294
           M    G SF E+L  ++E
Sbjct: 345 MMKGIGLSFEEILDKIIE 362


>gi|167564197|ref|ZP_02357113.1| D-alanine--D-alanine ligase B [Burkholderia oklahomensis EO147]
 gi|167571347|ref|ZP_02364221.1| D-alanine--D-alanine ligase B [Burkholderia oklahomensis C6786]
          Length = 312

 Score =  150 bits (378), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 103/303 (33%), Positives = 164/303 (54%), Gaps = 23/303 (7%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-VDRSVGLVLAHLKPD---LAFN 56
           +AVL+GG S+ER+VSL+SG+     L DAG      D  +R     L+ LK +    AFN
Sbjct: 12  VAVLLGGESAERDVSLNSGRLVLQGLRDAGIDAHPFDPAERP----LSALKDEGFARAFN 67

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR- 115
            LHG +GE+G +Q  L+   I YT SG+L SAL +DK R+K V    G+P  P   V R 
Sbjct: 68  ALHGGYGENGQIQGALDFYGIRYTGSGVLGSALGLDKFRTKLVWQQTGIPTPPFETVMRG 127

Query: 116 --FTMDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
             +   ++ +++    P  +KP   GSS+ ++ +K   +  L      +  H   +++E+
Sbjct: 128 DDYAARAKDIVAKLGVPLFVKPASEGSSVAVLKVKSADA--LPAALEEAAKHDKIVIVEK 185

Query: 171 YVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE--V 227
            ++ G E T  +  D  L + +I VP  +FY Y  KY + ++ +++P    LD  KE  +
Sbjct: 186 SIEGGGEYTACIAADLDLPLIKI-VPAGEFYDYHAKYIADDTQYLIPCG--LDAAKEAAL 242

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287
           +R+A  A   +GC    R+DF+ D  +   ++LE+N  PGMT  S+ P+ A   G S+ E
Sbjct: 243 KRIARRAFDVLGCTDWGRADFMLDA-AGNAYFLEVNTAPGMTDHSLPPKAARAVGISYSE 301

Query: 288 LLL 290
           L++
Sbjct: 302 LVV 304


>gi|33355853|gb|AAQ16273.1| D-Ala:D-Ser ligase [Enterococcus faecalis]
 gi|77380199|gb|ABA71731.1| VanG [Enterococcus faecalis]
          Length = 349

 Score =  150 bits (378), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 106/339 (31%), Positives = 162/339 (47%), Gaps = 54/339 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS------------------- 41
           +AV+ GG S+E EVSL S  A    +    F +  I + RS                   
Sbjct: 6   IAVIFGGNSTEYEVSLQSASAVFENINTNKFDIIPIGITRSGEWYHYTGEKEKILNNTWF 65

Query: 42  ------VGLVLAH-----------------LKPDLAFNVLHGNFGEDGLVQAILELLEIP 78
                   +V++                  +K DL F VLHG  GEDG +Q I EL  IP
Sbjct: 66  EDSKNLCPVVVSQNRSVKGFLEIASDKYRIIKVDLVFPVLHGKNGEDGTLQGIFELAGIP 125

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-----QHLISPPYVIKPL 133
                 L+SAL MDK R+ ++VS  G+ V  S+   RF  ++     +  ++ P  IKP+
Sbjct: 126 VVGCDTLSSALCMDKDRAHKLVSLAGISVPKSVTFKRFNEEAAMKEIEANLTYPLFIKPV 185

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL---DVT 190
           + GSS GI  + + Q   LD     ++ H  ++++E+ ++G E+ C V+G   L    V 
Sbjct: 186 RAGSSFGITKVIEKQE--LDAAIELAFEHDTEVIVEETINGFEVGCAVLGIDELIVGRVD 243

Query: 191 EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
           EI +  S F+ Y  KY+  +S   +PA+I  +  K +Q  A   ++A+GC G SR D  +
Sbjct: 244 EIELS-SGFFDYTEKYTLKSSKIYMPARIDAEAEKRIQEAAVTIYKALGCSGFSRVDMFY 302

Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
            P S ++ + E+N  PG T  S +P M    G SF ++L
Sbjct: 303 TP-SGEIVFNEVNTIPGFTSHSRYPNMMKGIGLSFSQML 340


>gi|206972463|ref|ZP_03233408.1| D-alanine--D-alanine ligase [Bacillus cereus AH1134]
 gi|229181827|ref|ZP_04309135.1| D-alanine--D-alanine ligase [Bacillus cereus 172560W]
 gi|206732623|gb|EDZ49800.1| D-alanine--D-alanine ligase [Bacillus cereus AH1134]
 gi|228601625|gb|EEK59138.1| D-alanine--D-alanine ligase [Bacillus cereus 172560W]
          Length = 304

 Score =  150 bits (378), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 95/304 (31%), Positives = 166/304 (54%), Gaps = 11/304 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGG+SSE++VS+ +G    + L+   +++  I ++  V L+      D A   LHG
Sbjct: 3   IGVIMGGVSSEKQVSIMTGNEMIAHLDKNKYEIVPITLNEKVDLIEKAKDIDFALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---FT 117
            +GEDG VQ  LE L IPY+ S +L+S++ MDK  SK+++   GV     I + +     
Sbjct: 63  KYGEDGTVQGTLESLGIPYSGSNMLSSSICMDKNISKKILRYEGVETPDWIELTKMEDLN 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGI-IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
           +D    +  P V+KP  GGSS+G+ IV  K++ I + L     W+   +++IE+Y+ G E
Sbjct: 123 LDELDKLGFPLVVKPNSGGSSVGVKIVYNKNELISM-LETVFEWDS--EVVIEKYIKGDE 179

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +TC ++    L +  I    ++F+ Y  KY   ++   +  ++P +I + V + +   ++
Sbjct: 180 ITCSILDGKQLPIVSIR-HAAEFFDYNAKYDDTSTVEEV-IELPAEINERVNKASLACYK 237

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           A+ C   +R D +        + +EIN  PGMT  S+ P+ A  AG S+ +LL  ++E +
Sbjct: 238 ALKCSVYARVDMMVK--DGVPYVMEINTLPGMTQSSLLPKSAEAAGISYSKLLDMIIETS 295

Query: 297 SCLR 300
             +R
Sbjct: 296 LKVR 299


>gi|323436208|ref|ZP_01051417.2| D-alanine-D-alanine ligase [Dokdonia donghaensis MED134]
 gi|321496523|gb|EAQ37719.2| D-alanine-D-alanine ligase [Dokdonia donghaensis MED134]
          Length = 331

 Score =  150 bits (378), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 111/331 (33%), Positives = 170/331 (51%), Gaps = 39/331 (11%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKV----------------SQIDVDRS-VG 43
           +AVLMGG SSE E+SL+SG    ++L+   ++V                 +  +D+    
Sbjct: 6   IAVLMGGYSSEYEISLNSGATVVASLDKEKYQVYAVHILAEGWFCVVDGERFTIDKGDFS 65

Query: 44  LVLAHLKP---DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
              A  K    D  +N +HG  GEDG +QA LELL IP T  G   SAL+ +K  S  V+
Sbjct: 66  FKDASAKKVTFDACYNTIHGTPGEDGKLQAYLELLGIPQTSCGFYESALTFNKRDSLSVL 125

Query: 101 SSCGVPVCPSILVNR---FTMDSQHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153
           SS GVP+  S+ VN+     M  ++L    +  P  +KP + GSS G+  + K+  +   
Sbjct: 126 SSYGVPMAASVYVNKGDEIDMSFKNLLAIKVGYPCFVKPNRAGSSYGVSKVYKEGDLIAA 185

Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSL 209
           L   +++   +Q+LIE ++ G E++ GV     G   L V EI VP  DF+S E KYS  
Sbjct: 186 L--DNAFKEDNQVLIESFLSGTEVSVGVYDFGNGAEVLPVCEI-VPDGDFFSLEAKYSG- 241

Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
            S  ++PA++      +VQ L    ++ +G +GI R DF+F     K  ++E+N  PG++
Sbjct: 242 KSQEIVPARLDERETADVQGLTKGIYELLGLKGICRIDFIFH--EGKPHFVEVNTNPGLS 299

Query: 270 PVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
             SI P     AG S  E+    +E  +C++
Sbjct: 300 KESIIPREFKAAGLSLTEVFGKAIE--TCIK 328


>gi|330957774|gb|EGH58034.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. maculicola
           str. ES4326]
          Length = 363

 Score =  149 bits (377), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 99/343 (28%), Positives = 176/343 (51%), Gaps = 53/343 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------------------- 40
           +A++ GG SSE EVSL S +   +A++   + ++ I VD+                    
Sbjct: 5   VAIVFGGQSSEHEVSLQSARNVINAIDRERYALTLIGVDKLGRWLRFDEADYLVNANDPA 64

Query: 41  ----------------SVGLVLAHL---KP----DLAFNVLHGNFGEDGLVQAILELLEI 77
                           S G  L  +   KP    D+ F ++HG FGEDG +Q +L +L I
Sbjct: 65  RIRLSRSGKQLSLLPGSTGGQLVEVETGKPLASIDVVFPLIHGAFGEDGALQGLLRMLAI 124

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM----DSQHLISPPYVIKPL 133
           P+  + +LASA  MDK  +K+++   G+ V P +++ R       D+   +  P  +KP 
Sbjct: 125 PFVGADVLASAACMDKDVTKRLLRDAGIAVAPFLVLTRGETLAFADAVAQLGLPMFVKPA 184

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
             GSS+G+  +  +      L     ++H  +LLIEQ + G E+ C V+G+ +  V+   
Sbjct: 185 NQGSSVGVSKVSDEAGFAAALALGFEFDH--KLLIEQGIVGREVECAVLGNHAPQVSVCG 242

Query: 194 --VPKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
             +   +FY+Y+ KY + +   + +PA++P D+  +V+ +A  A++ +GC G+SR DF F
Sbjct: 243 EVIANDEFYAYDTKYLNGDQARIAIPAEMPADLSDQVRDVALQAYKVLGCAGLSRVDF-F 301

Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
              +R++   E+N  PG T +S++P++   +G S+ EL+  ++
Sbjct: 302 VTDARQIIINEVNTLPGFTSISMYPKLWQASGLSYAELIHRLI 344


>gi|330981592|gb|EGH79695.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. aptata str.
           DSM 50252]
          Length = 345

 Score =  149 bits (377), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 99/345 (28%), Positives = 175/345 (50%), Gaps = 55/345 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------------------- 40
           +A++ GG SSE EVSL S +   +A++   + ++ I VD+                    
Sbjct: 5   VAIVFGGQSSEHEVSLQSARNVINAIDRERYALTLIGVDKLGRWLHFDEADYLLNATDPA 64

Query: 41  ----------------SVGLVLAHLKP-------DLAFNVLHGNFGEDGLVQAILELLEI 77
                           SVG     ++        D+ F ++HG FGEDG +Q +L +L +
Sbjct: 65  RIKLSASGKPLSLLPGSVGGQFVEVESGQPLAAIDVVFPLIHGAFGEDGALQGLLRMLAV 124

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR-----FTMDSQHLISPPYVIKP 132
           P+  + +L+SA+ MDK  +K+++   G+ V P  +++R     FT  +  L   P  IKP
Sbjct: 125 PFVGADVLSSAVCMDKDVTKRLLRDAGITVAPFRVLSRGESLSFTEAADQL-GLPMFIKP 183

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG--DASLDVT 190
              GSS+G+  +  +      L     ++H  +LLIEQ + G E+ C V+G  D  + V 
Sbjct: 184 ANQGSSVGVSKVSDEAGFAAALALGFEFDH--KLLIEQGIVGREVECAVLGNVDVQVSVC 241

Query: 191 EIAVPKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
              +   +FY+Y+ KY + +   + +PA++P D+  +V+ +A  A++ +GC G+SR DF 
Sbjct: 242 GEVIANDEFYAYDTKYLNGDQARIAIPAELPADLSDQVREVALQAYKVLGCAGLSRVDF- 300

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           F    R +   E+N  PG T +S++P++   +G S+ EL+  +++
Sbjct: 301 FVTEGRDIIINEVNTLPGFTSISMYPKLWQASGLSYAELIHRLID 345


>gi|255306638|ref|ZP_05350809.1| putative D-alanine:D-alanine ligase (putative
           vancomycin/teicoplanin A-type resistance protein)
           [Clostridium difficile ATCC 43255]
          Length = 366

 Score =  149 bits (377), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 93/258 (36%), Positives = 146/258 (56%), Gaps = 15/258 (5%)

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV 105
           + + K D  F +LHG  GEDG VQ + EL  I     G L+SAL MDK +S ++V S G+
Sbjct: 111 IKYTKLDFVFPILHGKNGEDGTVQGLFELAGIQVIGCGTLSSALCMDKDKSHKLVHSEGI 170

Query: 106 PVCPSILV---NRFTM-DSQHLISPPYVIKPLKGGSSLGI--IVIKKDQSIPLDLLQSSS 159
            V  SIL+   ++F + +    ++ P  IKP++ GSS GI  I  K++  + +DL    +
Sbjct: 171 KVPKSILLKYSDKFNVAELSKDLTYPLFIKPVRAGSSFGISKIYKKEELQVAVDL----A 226

Query: 160 WNHGDQLLIEQYVDGIELTCGVMGDASL---DVTEIAVPKSDFYSYELKYSSLNSTHVLP 216
           + H ++++IE+ +DG E+ C V+G+  L    V EI + K  F+ Y  KY+  +S   +P
Sbjct: 227 FEHDNEVIIEENIDGFEVGCAVLGNDDLLVGRVDEIELSKG-FFDYTEKYTLKSSKIHMP 285

Query: 217 AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPE 276
           A+I LD  K +Q  A + ++ +GC G +R D    P S ++ + E+N  PG T  S +P 
Sbjct: 286 ARIDLDCEKRIQETAKIIYRTLGCSGFARVDMFLTP-SGEIIFNEVNTIPGFTSHSRYPN 344

Query: 277 MAAYAGYSFRELLLWMVE 294
           M    G SF E+L  ++E
Sbjct: 345 MMKGIGLSFEEILDKIIE 362


>gi|297571651|ref|YP_003697425.1| D-alanine/D-alanine ligase [Arcanobacterium haemolyticum DSM 20595]
 gi|296931998|gb|ADH92806.1| D-alanine/D-alanine ligase [Arcanobacterium haemolyticum DSM 20595]
          Length = 372

 Score =  149 bits (377), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 88/256 (34%), Positives = 137/256 (53%), Gaps = 22/256 (8%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+ F +LHG FGEDG +Q +LE+  +PY   G+ ASA  MDK   K V+ + G+PV P +
Sbjct: 106 DVVFPLLHGPFGEDGTIQGMLEMAGVPYVGCGVFASAAGMDKHYMKVVLEAAGLPVAPYV 165

Query: 112 LVN-RFTMDSQHLI-------SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
           +   R   D +  +       S P  +KP + GSSLGI  + + + +P  +  +++  H 
Sbjct: 166 VATARKWRDERDQVLADVAKMSFPVYVKPARAGSSLGITRVARIEDVPAAV--AAAQIHD 223

Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIA---------VPKSDFYSYELKYSSLNS-TH 213
            ++LIEQ V+G E+ C V+G    D T  A         +P+  FY +E KY   +  T 
Sbjct: 224 PKVLIEQGVNGREIECAVLGGRG-DTTPRASVVGEVLVNLPEDGFYDFEHKYLDTDGLTM 282

Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273
            +PA +P +I ++++  A     A GC G+SR DF   P   + F +E+N  PG TP S+
Sbjct: 283 SIPANVPEEISEKIRAQAIATFDAFGCEGMSRVDFFLTP-EGETFVIELNTIPGFTPFSM 341

Query: 274 FPEMAAYAGYSFRELL 289
           +P +    G  + +LL
Sbjct: 342 YPVLWENTGLPYSQLL 357


>gi|261414467|ref|YP_003248150.1| D-alanine/D-alanine ligase [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261370923|gb|ACX73668.1| D-alanine/D-alanine ligase [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|302327372|gb|ADL26573.1| D-alanyl D-alanine ligase [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 344

 Score =  149 bits (377), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 91/248 (36%), Positives = 142/248 (57%), Gaps = 17/248 (6%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+AF  LHG +GEDG +QA+LE   IPYT  G+LASAL+MDK++SK++  + G+P  P  
Sbjct: 92  DIAFLALHGKWGEDGHIQAMLENWNIPYTGCGLLASALAMDKIKSKEIYRANGIPTPPYR 151

Query: 112 LVNRFTMDSQHLISP------PYVIKPLKGGSSLGIIVIKK-DQS--IPLDLLQSSSWNH 162
           ++ +       L+S       P VIK   GGSS+GI + K  D++  I  DL + S    
Sbjct: 152 VIWKHDFTGDTLVSVADELGYPLVIKDPLGGSSIGIGIAKNLDEAGKIAQDLFKDS---- 207

Query: 163 GDQLLIEQYVDGIELTCG-VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL 221
            ++LL E+++ G E +CG + G+  L  TE+ +   +++ +E KY+      V PA+   
Sbjct: 208 -NRLLCEKFIAGGEASCGYIEGEKPLPPTEMRMTTREYFDFEAKYNG-ECQEVTPAEFAP 265

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYA 281
           ++   +Q L   AH A+G  G SR+D        ++F +E N  PGMTP S+ P+ AA  
Sbjct: 266 ELTARIQELVKNAHYALGGAGYSRTDVRITK-DGELFAIETNTLPGMTPTSLLPQQAACV 324

Query: 282 GYSFRELL 289
           G ++ +L+
Sbjct: 325 GITYSQLI 332


>gi|170761380|ref|YP_001785794.1| D-alanine--D-alanine ligase [Clostridium botulinum A3 str. Loch
           Maree]
 gi|229463745|sp|B1KV16|DDL_CLOBM RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|169408369|gb|ACA56780.1| D-alanine--D-alanine ligase [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 300

 Score =  149 bits (377), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 96/292 (32%), Positives = 158/292 (54%), Gaps = 9/292 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGGIS+EREVSL+SG+     LE    ++  I +D+   ++      D AF  LHG
Sbjct: 3   IGVIMGGISTEREVSLNSGREVIKYLELLEHEIIPIIIDKKEDVMEKAKGIDFAFLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-LVNRFTMD 119
            FGEDG VQ++L+ L+IPY+  G L SA+ MDK  +K+++    +     + + N   +D
Sbjct: 63  KFGEDGTVQSVLQTLDIPYSGCGPLTSAICMDKDMTKKILKYANINTADWVNVTNAEDID 122

Query: 120 SQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            + +  I  P  +KP  GGSS+   ++K  + I   +  +  ++   +++IE Y  G E+
Sbjct: 123 YEAIEKIGYPVFVKPNSGGSSVATNLVKNKEGIKEAVELALKYDK--EVMIENYTKGEEI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC ++    L V  I  P ++F+ Y  KY+   S  V+  ++  +++K+V+ +A    + 
Sbjct: 181 TCCMLNGKMLPVLAIR-PHAEFFDYTAKYADGGSDEVV-IELEENLHKKVEEMALACWKE 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           + C    R D +        + LE+N  PGMT  S+FP+ A   G SF ELL
Sbjct: 239 LKCEVYVRVDMIVK--EGVPYVLELNTLPGMTKNSLFPKSANAVGISFAELL 288


>gi|170783394|ref|YP_001711728.1| D-alanine--D-alanine ligase B [Clavibacter michiganensis subsp.
           sepedonicus]
 gi|169157964|emb|CAQ03174.1| D-alanine--D-alanine ligase B [Clavibacter michiganensis subsp.
           sepedonicus]
          Length = 321

 Score =  149 bits (377), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 105/315 (33%), Positives = 160/315 (50%), Gaps = 21/315 (6%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62
           VL GGIS ER+VSL SG+    AL  AG   S  D D ++   L    P + + VLHG  
Sbjct: 11  VLAGGISHERDVSLRSGRRVVDALRGAGVVASLRDPDATLLDFLRETPPAVVWPVLHGAS 70

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-- 120
           GEDG +  +LEL  +PY  S   A+ L+ DK  +K +  + G+    S+ + + T     
Sbjct: 71  GEDGALLGLLELAGVPYVGSSARAARLAWDKPTAKAIAGTVGIRTPRSVTLPKDTFRELG 130

Query: 121 --------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                      +  PY +KP +GGS+ G+ +++   ++P  ++   ++ +GD  LIEQ +
Sbjct: 131 AAAVLRLVTEAVPAPYAVKPARGGSAQGVTIVRDADALPRAMVD--AYTYGDVALIEQLI 188

Query: 173 DGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           +G E+  GV+    G  +L  TEI VP S  Y YE +Y++  +    PA+I  +      
Sbjct: 189 EGTEVAIGVIDTGAGPEALPATEI-VPTSGVYGYEARYNAGLTRFYTPARISPEEAAAAS 247

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
             A   H+A+G   +SR D + D      F LE+NV PG+T  S+ P+  A AG    +L
Sbjct: 248 TAAVGIHRALGIGQMSRVDIIIDAAGEPWF-LEVNVIPGLTETSLLPQGLAAAGIEVGDL 306

Query: 289 LLWMVE---DASCLR 300
              + E   DAS +R
Sbjct: 307 YRRLAEAARDASTIR 321


>gi|304406373|ref|ZP_07388029.1| D-alanine/D-alanine ligase [Paenibacillus curdlanolyticus YK9]
 gi|304344431|gb|EFM10269.1| D-alanine/D-alanine ligase [Paenibacillus curdlanolyticus YK9]
          Length = 377

 Score =  149 bits (376), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 89/255 (34%), Positives = 137/255 (53%), Gaps = 15/255 (5%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+ F +LHG FGEDG +Q +LE+  IPY  +G+LASA+ MDK+  K+V +  G+P C   
Sbjct: 106 DVIFPLLHGTFGEDGTIQGLLEMANIPYVGAGVLASAVGMDKVMMKKVFAHEGLPQCMFR 165

Query: 112 LVNRFTMDSQH---------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
             NR   D +           +  P  IKP   GSS+GI   K  + +   +  + ++ +
Sbjct: 166 YFNRTQWDKETDYYVTEIEVSLGYPCFIKPANLGSSVGISKAKNREELIEAI--NYAFRY 223

Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKI 219
             ++++E++VD  E+   V+G+     +   EI  P +DFY Y+ KY    S   +PA I
Sbjct: 224 DRKVIVEEFVDAREIEVSVLGNDEPKASVPGEIR-PSNDFYDYKAKYIDGTSVMEIPANI 282

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279
           P    + V+ +A  A+QAI   G+SR DF       ++F  E+N  PG TP S++P M  
Sbjct: 283 PALTSEAVREMAIRAYQAIDGSGLSRVDFFMRKSDGELFINEVNTMPGFTPFSMYPLMWQ 342

Query: 280 YAGYSFRELLLWMVE 294
             G  +RELL  ++E
Sbjct: 343 ETGLPYRELLDTLIE 357


>gi|229044313|ref|ZP_04191982.1| D-alanine--D-alanine ligase [Bacillus cereus AH676]
 gi|229127959|ref|ZP_04256943.1| D-alanine--D-alanine ligase [Bacillus cereus BDRD-Cer4]
 gi|228655521|gb|EEL11375.1| D-alanine--D-alanine ligase [Bacillus cereus BDRD-Cer4]
 gi|228725027|gb|EEL76315.1| D-alanine--D-alanine ligase [Bacillus cereus AH676]
          Length = 304

 Score =  149 bits (376), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 95/305 (31%), Positives = 168/305 (55%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGG+SSE++VS+ +G    + L+   +++  I ++  + L+      D A   LHG
Sbjct: 3   IGVIMGGVSSEKQVSIMTGNEMIAHLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---FT 117
            +GEDG VQ  LE L IPY+ S +L+S++ MDK  SK+++   GV     I + +     
Sbjct: 63  KYGEDGTVQGTLESLGIPYSGSNMLSSSICMDKNISKKILRYEGVETPDWIELTKMEDLN 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGI-IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
           +D    +  P V+KP  GGSS+G+ IV  K++ I + L     W+   +++IE+Y+ G E
Sbjct: 123 LDELDKLGFPLVVKPNSGGSSVGVKIVYNKNELISM-LETVFEWDS--EVVIEKYIKGDE 179

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +TC ++    L +  I    ++F+ Y  KY   ++   +  ++P +I + V + +   ++
Sbjct: 180 ITCSILDGKQLPIVSIR-HAAEFFDYNAKYDDTSTVEEV-IELPAEIKERVNKASLTCYK 237

Query: 237 AIGCRGISRSDFLF-DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           A+ C   +R D +  D +    + +EIN  PGMT  S+ P+ A  AG S+ +LL  ++E 
Sbjct: 238 ALKCSVYARVDMMVKDGIP---YVMEINTLPGMTQSSLLPKSAEAAGISYSKLLDMIIET 294

Query: 296 ASCLR 300
           +  +R
Sbjct: 295 SLKVR 299


>gi|284052191|ref|ZP_06382401.1| D-alanyl-alanine synthetase A [Arthrospira platensis str. Paraca]
 gi|291566125|dbj|BAI88397.1| D-alanine--D-alanine ligase [Arthrospira platensis NIES-39]
          Length = 358

 Score =  149 bits (376), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 109/344 (31%), Positives = 173/344 (50%), Gaps = 54/344 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASAL----EDAGFKVSQIDVDRS--------VGLVLAH 48
           + +L GG S E EVS++S KA A+AL      + ++V  I ++++           VL  
Sbjct: 6   VGLLFGGCSGEHEVSITSAKAIANALSIDPNPSKYEVVPIYIEKNGVWHRGTEAEAVLES 65

Query: 49  LKP----------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
            +P                      DL F +LHG  GEDG VQ +L L+++PY  SG+L 
Sbjct: 66  GQPLTVTGEVIPSDRIPNPATVKDIDLWFPILHGPNGEDGTVQGMLTLMQVPYVGSGVLG 125

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP------------PYVIKPLK 134
           SA+ MDK+  K   S  G+P      V R  + S   I P            P  +KP  
Sbjct: 126 SAVGMDKIAMKMAFSQAGIPQVRYQAVRRSQVWSNPCIFPKLCDDLDAALGYPCFVKPAN 185

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD----ASLDVT 190
            GSS+GI  ++  Q +   L  +++++   ++++E  V+  EL C V+G+    AS+ V 
Sbjct: 186 LGSSVGISKVRSRQELETALDAAATYDR--RIIVEAGVEARELECAVLGNDYPKASV-VG 242

Query: 191 EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
           EI+   SDFY YE KY+   +  ++PA I   I  +V+ +A  A  A+   G++R DF +
Sbjct: 243 EISY-NSDFYDYETKYTDGKANLMIPAPIDTAIASKVRDMAIEAFLAVDAAGLARVDFFY 301

Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
              + +V   EIN  PG T +S++P++ +  G SF EL+  ++E
Sbjct: 302 IEKTGEVLLNEINTLPGFTALSMYPQLWSATGVSFPELVNQLIE 345


>gi|149917372|ref|ZP_01905870.1| D-alanine--D-alanine ligase A [Plesiocystis pacifica SIR-1]
 gi|149821709|gb|EDM81105.1| D-alanine--D-alanine ligase A [Plesiocystis pacifica SIR-1]
          Length = 360

 Score =  149 bits (376), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 103/341 (30%), Positives = 169/341 (49%), Gaps = 49/341 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALE-------------DAGFKVSQID------VDRS 41
           +A++ GG SSE +VS+ S     +A++             +  FK   ID       +  
Sbjct: 6   LALVYGGRSSEHDVSIRSATEVLAAVDRSRFEPVAVAVTREGAFKTGPIDASLPGPTEAP 65

Query: 42  VGLVLAHLKP--DLA---------FNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
           +  VL   +P  DL          F +LHG +GEDG +Q + E+ ++PY  SG+LAS+L 
Sbjct: 66  LRAVLESGEPIADLGAFLRSCACTFPLLHGPYGEDGTIQGLFEVFDVPYVGSGVLASSLC 125

Query: 91  MDKMRSKQVVSSC--GVPVCPSILVNRFTMDSQHLISP----------PYVIKPLKGGSS 138
           MDK+  K+ V++    +PV P I V+      + +             P  +KP   GSS
Sbjct: 126 MDKVAFKRYVAAAPNDIPVTPGISVDLVLEGRERVFERAHAAAEAHGFPLFVKPANQGSS 185

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT-----EIA 193
           +G  V + D    LD     +  +  Q++IE+ +D  E+   V GD   D       EI 
Sbjct: 186 VG--VSRADDLASLDAALDLALRYDAQVVIEKGLDAREIELAVFGDGGPDTVVSPPGEII 243

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
           +PK ++Y+YE KY    +++ +P ++P      +Q LA  A +A  C G++R DFL +  
Sbjct: 244 LPKGEWYTYETKYVDDVASYAIPVELPAATTARLQELALRAFRATRCSGLARVDFLVERD 303

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           S + +  E+N  PG T +S++P++   AG S+ EL+  +V+
Sbjct: 304 SLEPWLNEVNTLPGFTSISMYPKLMGVAGVSYTELISKLVD 344


>gi|325474895|gb|EGC78081.1| D-alanine-D-alanine ligase [Treponema denticola F0402]
          Length = 368

 Score =  149 bits (376), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 87/303 (28%), Positives = 154/303 (50%), Gaps = 21/303 (6%)

Query: 10  SEREVSLSSGKACASALEDAGFKVSQI---DVDRSVGLVLAHLKPDLAFNVLHGNFGEDG 66
            ERE  + + KA     +D   +V+ I      + +      L  D  F VLHG FGEDG
Sbjct: 51  EERERIIKNEKAVLKIKKDEAKRVTVIPGGGTKKGLKAGDDFLPTDAVFAVLHGRFGEDG 110

Query: 67  LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD------- 119
            +Q + E+ ++PY    ++++++SMDK ++K +    G+P+ P I + +   D       
Sbjct: 111 TIQGLFEMADLPYVGGDVMSTSISMDKEKTKMIWDYSGLPIVPYIAIKKQDWDDPEKKKA 170

Query: 120 ----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175
               ++  +  P  IKP + GSS+G  ++K    +     +S  W+  +++L+E  ++  
Sbjct: 171 LLARAEKDLEYPLFIKPCRAGSSVGAGMVKNRNELLEQAEESFLWD--NKILVEACIEAR 228

Query: 176 ELTCGVMGDASLDVTEIA---VPKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLA 231
           E+ C V G+    V  I    +P   FY YE KY+  N   + +PA +     K ++  A
Sbjct: 229 EVECSVTGNTKT-VAYIPGEIIPTHKFYDYEAKYTDPNGAELKIPADLNETQRKTIRETA 287

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A++A+   G+SR DF  D  + K++  E+N  PG T +S+FP+M   +G  + EL++ 
Sbjct: 288 IKAYEALDLSGLSRVDFFIDKRTGKIYLNEVNTIPGFTSISMFPKMCGASGLPYNELIMH 347

Query: 292 MVE 294
           ++E
Sbjct: 348 LIE 350


>gi|206896178|ref|YP_002247025.1| D-alanine--D-alanine ligase (D-alanylalanine
           synthetase)(D-Ala-D-Ala ligase) [Coprothermobacter
           proteolyticus DSM 5265]
 gi|226729269|sp|B5Y8C8|DDL_COPPD RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|206738795|gb|ACI17873.1| D-alanine--D-alanine ligase (D-alanylalanine
           synthetase)(D-Ala-D-Ala ligase) [Coprothermobacter
           proteolyticus DSM 5265]
          Length = 304

 Score =  149 bits (376), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 98/305 (32%), Positives = 158/305 (51%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59
           + VL GG S ERE+SL SG+  A+ L   G +V  +D    +    L  LKPD  F  LH
Sbjct: 3   IVVLFGGTSPEREISLKSGENIAATLRARGHQVETLDTAVPNFVEQLMQLKPDCVFPALH 62

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM- 118
           G  GEDG +Q +L +L IPY  S + AS ++MDK  +K V    G+P    I V    + 
Sbjct: 63  GADGEDGKIQGLLSILHIPYVGSDVRASVITMDKYLTKLVALQSGIPTPSFIYVYDPHLV 122

Query: 119 ----DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
               D +  +  P+++KP   GS++G+ +++      + L    ++   D+LL+E+++DG
Sbjct: 123 PDYWDVERKLGSPFIVKPCDVGSTIGLSLVRSASEYEVAL--EEAFRFSDRLLLEEFIDG 180

Query: 175 IELTCGV--MGDASLDVTEIAVPKSD-FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
            E+T G+  +G   L +  I V K D  + Y+ KY    + HV    I ++  + +   +
Sbjct: 181 FEVTVGLFRLGGDFLVLPPIYVVKPDRIFDYDTKYKPGGAKHVYDLPISVEARERLTSYS 240

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               + +G  G++R D++        + LEIN  PGMT  S+ P+   +AG  F E L  
Sbjct: 241 KRICKIVGIGGVARLDYIVK--DETPYLLEINSIPGMTAESLVPDEVRHAGRDFGEFLED 298

Query: 292 MVEDA 296
           +++DA
Sbjct: 299 LIKDA 303


>gi|329122144|ref|ZP_08250752.1| D-alanine-D-alanine ligase [Dialister micraerophilus DSM 19965]
 gi|327466951|gb|EGF12467.1| D-alanine-D-alanine ligase [Dialister micraerophilus DSM 19965]
          Length = 314

 Score =  149 bits (376), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 99/306 (32%), Positives = 162/306 (52%), Gaps = 17/306 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV-LAHLKPDLAFNVLH 59
           + VLMGG S E E+S  +GKA  +AL   G+ V  ++      L  L  L  ++ F  LH
Sbjct: 11  ITVLMGGPSDEAEISRKTGKAIVNALSGLGYSVVGLEYHPECVLKQLQELNTEIVFLALH 70

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-------- 111
           G +GEDG +Q +LEL  IPYT SG+ +SA++MDK+ +  +    G+ +  S+        
Sbjct: 71  GKYGEDGTIQGLLELAGIPYTGSGVSSSAITMDKIFTAHIFKEQGIRMAKSMSFKEKEGI 130

Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
             VN   + + ++   P V+KP   GS++GI ++K+   +   + +   +    ++L+E+
Sbjct: 131 DFVNNQILKNFNM---PVVLKPACEGSTIGIEIVKESNDLKDAICR--VFKVESRILVEE 185

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
           Y+DG E T  VM   ++ V +I  P S  Y +  KY+   + +++PA I  ++  E+Q +
Sbjct: 186 YLDGEEFTVPVMNGKAMPVIQIC-PHSGQYDFHSKYTKGATDYLVPAPISEELKSEMQLM 244

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A   +    C G+ R D   D  +   + LE N  PGMT  S+ P+ AA  G SF +L  
Sbjct: 245 AEKGYHVAECEGVVRFDMRTDH-NGVPYVLEANSIPGMTETSLVPKSAANIGISFAKLCE 303

Query: 291 WMVEDA 296
            ++E A
Sbjct: 304 MILEGA 309


>gi|228939729|ref|ZP_04102310.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228972592|ref|ZP_04133196.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228979199|ref|ZP_04139542.1| D-alanine--D-alanine ligase [Bacillus thuringiensis Bt407]
 gi|228780556|gb|EEM28780.1| D-alanine--D-alanine ligase [Bacillus thuringiensis Bt407]
 gi|228787133|gb|EEM35108.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228819961|gb|EEM66005.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar
           berliner ATCC 10792]
          Length = 304

 Score =  149 bits (375), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 95/305 (31%), Positives = 168/305 (55%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGG+SSE++VS+ +G    + L+   +++  I ++  + L+      D A   LHG
Sbjct: 3   IGVIMGGVSSEKQVSIMTGNEMIAHLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---FT 117
            +GEDG VQ  LE L IPY+ S +L+S++ MDK  SK+++   GV     I + +     
Sbjct: 63  KYGEDGTVQGTLESLGIPYSGSNMLSSSICMDKNISKKILRYEGVETPDWIELTKMEDLN 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGI-IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
           +D    +  P V+KP  GGSS+G+ IV  K++ I + L     W+   +++IE+Y+ G E
Sbjct: 123 LDELDKLGFPLVVKPNSGGSSVGVKIVYNKNELISM-LETVFEWDS--EVVIEKYIKGDE 179

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +TC ++    L +  I    ++F+ Y  KY   ++   +  ++P +I + V + +   ++
Sbjct: 180 ITCSILDGKQLPIVSIR-HAAEFFDYNAKYDDTSTVEEV-IELPAEINERVNKASLACYK 237

Query: 237 AIGCRGISRSDFLF-DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           A+ C   +R D +  D +    + +EIN  PGMT  S+ P+ A  AG S+ +LL  ++E 
Sbjct: 238 ALKCSVYARVDMMVKDGIP---YVMEINTLPGMTQSSLLPKSAEAAGISYSKLLDMIIET 294

Query: 296 ASCLR 300
           +  +R
Sbjct: 295 SLKVR 299


>gi|313891488|ref|ZP_07825101.1| D-ala D-ala ligase N-terminal domain protein [Dialister
           microaerophilus UPII 345-E]
 gi|313120065|gb|EFR43244.1| D-ala D-ala ligase N-terminal domain protein [Dialister
           microaerophilus UPII 345-E]
          Length = 311

 Score =  149 bits (375), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 99/306 (32%), Positives = 162/306 (52%), Gaps = 17/306 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV-LAHLKPDLAFNVLH 59
           + VLMGG S E E+S  +GKA  +AL   G+ V  ++      L  L  L  ++ F  LH
Sbjct: 8   ITVLMGGPSDEAEISRKTGKAIVNALSGLGYSVVGLEYHPECVLKQLQELNTEIVFLALH 67

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-------- 111
           G +GEDG +Q +LEL  IPYT SG+ +SA++MDK+ +  +    G+ +  S+        
Sbjct: 68  GKYGEDGTIQGLLELAGIPYTGSGVSSSAITMDKIFTAHIFKEQGIRMAKSMSFKEKEGI 127

Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
             VN   + + ++   P V+KP   GS++GI ++K+   +   + +   +    ++L+E+
Sbjct: 128 DFVNNQILKNFNM---PVVLKPACEGSTIGIEIVKESNDLKDAICR--VFKVESRILVEE 182

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
           Y+DG E T  VM   ++ V +I  P S  Y +  KY+   + +++PA I  ++  E+Q +
Sbjct: 183 YLDGEEFTVPVMNGKAMPVIQIC-PHSGQYDFHSKYTKGATDYLVPAPISEELKSEMQLM 241

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A   +    C G+ R D   D  +   + LE N  PGMT  S+ P+ AA  G SF +L  
Sbjct: 242 AEKGYHVAECEGVVRFDMRTDH-NGVPYVLEANSIPGMTETSLVPKSAANIGISFAKLCE 300

Query: 291 WMVEDA 296
            ++E A
Sbjct: 301 MILEGA 306


>gi|228908338|ref|ZP_04072183.1| D-alanine--D-alanine ligase [Bacillus thuringiensis IBL 200]
 gi|228851379|gb|EEM96188.1| D-alanine--D-alanine ligase [Bacillus thuringiensis IBL 200]
          Length = 304

 Score =  149 bits (375), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 95/305 (31%), Positives = 168/305 (55%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGG+SSE++VS+ +G    + L+   +++  I ++  + L+      D A   LHG
Sbjct: 3   IGVIMGGVSSEKQVSIMTGNEMIAHLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---FT 117
            +GEDG VQ  LE L IPY+ S +L+S++ MDK  SK+++   GV     I + +     
Sbjct: 63  KYGEDGTVQGTLESLGIPYSGSNMLSSSICMDKNISKKILRYEGVETPDWIELTKMEDLN 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGI-IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
           +D    +  P V+KP  GGSS+G+ IV  K++ I + L     W+   +++IE+Y+ G E
Sbjct: 123 LDELDKLGFPLVVKPNSGGSSVGVKIVYNKNELISM-LETVFEWDS--EVVIEKYIKGDE 179

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +TC ++    L +  I    ++F+ Y  KY   ++   +  ++P +I + V + +   ++
Sbjct: 180 ITCSILDGKQLPIVSIR-HAAEFFDYNAKYDDTSTVEEV-IELPAEINERVNKASLACYK 237

Query: 237 AIGCRGISRSDFLF-DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           A+ C   +R D +  D +    + +EIN  PGMT  S+ P+ A  AG S+ +LL  ++E 
Sbjct: 238 ALKCSVYARVDMMVKDGIP---YVMEINTLPGMTQSSLLPKSAEAAGISYSKLLDMIIET 294

Query: 296 ASCLR 300
           +  +R
Sbjct: 295 SLKVR 299


>gi|34497927|ref|NP_902142.1| D-alanyl-alanine synthetase A [Chromobacterium violaceum ATCC
           12472]
 gi|39930968|sp|Q7NV72|DDLA_CHRVO RecName: Full=D-alanine--D-alanine ligase A; AltName:
           Full=D-Ala-D-Ala ligase A; AltName: Full=D-alanylalanine
           synthetase A
 gi|34103782|gb|AAQ60143.1| D-alanine-D-alanine ligase [Chromobacterium violaceum ATCC 12472]
          Length = 366

 Score =  149 bits (375), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 101/346 (29%), Positives = 173/346 (50%), Gaps = 55/346 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------------------- 40
           + ++ GG SSE EVSL S +    A++   F+VS I VD+                    
Sbjct: 6   VGLIFGGQSSEHEVSLQSARNILQAIDGERFEVSLIGVDKQGRWHASQASNFLLNADDPG 65

Query: 41  ---------SVGLV----------LAHLKP----DLAFNVLHGNFGEDGLVQAILELLEI 77
                    ++ LV           A+  P    D+AF ++HG  GEDG +Q +L +  I
Sbjct: 66  RIALRESGENLALVPGECSGQLQTAANAHPLAQIDVAFPIVHGTLGEDGSLQGLLRMANI 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIK 131
           P+  +G+L SA+ MDK  +K+++   G+ V P + + R       L      +  P  +K
Sbjct: 126 PFVGAGVLGSAVCMDKDVAKRLLRDAGLKVAPFVSLTRSKAAGADLSAIVEQLGLPLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  +K++  +   L ++  ++H  ++L+EQ V G E+ C V+G+     + 
Sbjct: 186 PANQGSSVGVSKVKREADLRAALDEAFRYDH--KVLVEQAVIGREIECAVLGNERPRASG 243

Query: 192 IA--VPKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               V   +FY+Y+ KY + +   V +PA IP +  + ++ +A  A QA+ C G++R D 
Sbjct: 244 CGEIVLSDEFYAYDTKYLNEDGARVAVPADIPDEACQRIRGIAIEAFQALECSGMARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
              P   +V   E+N  PG T +S++P++   AG S+REL+  ++E
Sbjct: 304 FLTP-DGEVVINELNTLPGFTNISMYPKLWQAAGMSYRELITALIE 348


>gi|229110023|ref|ZP_04239600.1| D-alanine--D-alanine ligase [Bacillus cereus Rock1-15]
 gi|228673376|gb|EEL28643.1| D-alanine--D-alanine ligase [Bacillus cereus Rock1-15]
          Length = 304

 Score =  149 bits (375), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 95/305 (31%), Positives = 168/305 (55%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGG+SSE++VS+ +G    + L+   +++  I ++  + L+      D A   LHG
Sbjct: 3   IGVIMGGVSSEKQVSIMTGNEMIAHLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---FT 117
            +GEDG VQ  LE L IPY+ S +L+S++ MDK  SK+++   GV     I + +     
Sbjct: 63  KYGEDGTVQGTLESLGIPYSGSNMLSSSICMDKNISKKILRYEGVETPDWIELTKMEDLN 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGI-IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
           +D    +  P V+KP  GGSS+G+ IV  K++ I + L     W+   +++IE+Y+ G E
Sbjct: 123 LDELDKLGFPLVVKPNSGGSSVGVKIVYNKNELISM-LETVFEWDS--EVVIEKYIKGDE 179

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +TC ++    L +  I    ++F+ Y  KY   ++   +  ++P +I + V + +   ++
Sbjct: 180 ITCSILDGKQLPIVSIR-HAAEFFDYNAKYDDTSTVEEV-IELPAEIKERVNKASLACYK 237

Query: 237 AIGCRGISRSDFLF-DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           A+ C   +R D +  D +    + +EIN  PGMT  S+ P+ A  AG S+ +LL  ++E 
Sbjct: 238 ALKCSVYARVDMMVKDGIP---YVMEINTLPGMTQSSLLPKSAEAAGISYSKLLDMIIET 294

Query: 296 ASCLR 300
           +  +R
Sbjct: 295 SLKVR 299


>gi|326940323|gb|AEA16219.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 311

 Score =  149 bits (375), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 95/305 (31%), Positives = 168/305 (55%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGG+SSE++VS+ +G    + L+   +++  I ++  + L+      D A   LHG
Sbjct: 10  IGVIMGGVSSEKQVSIMTGNEMIAHLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 69

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---FT 117
            +GEDG VQ  LE L IPY+ S +L+S++ MDK  SK+++   GV     I + +     
Sbjct: 70  KYGEDGTVQGTLESLGIPYSGSNMLSSSICMDKNISKKILRYEGVETPDWIELTKMEDLN 129

Query: 118 MDSQHLISPPYVIKPLKGGSSLGI-IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
           +D    +  P V+KP  GGSS+G+ IV  K++ I + L     W+   +++IE+Y+ G E
Sbjct: 130 LDELDKLGFPLVVKPNSGGSSVGVKIVYNKNELISM-LETVFEWDS--EVVIEKYIKGDE 186

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +TC ++    L +  I    ++F+ Y  KY   ++   +  ++P +I + V + +   ++
Sbjct: 187 ITCSILDGKQLPIVSIR-HAAEFFDYNAKYDDTSTVEEV-IELPAEINERVNKASLACYK 244

Query: 237 AIGCRGISRSDFLF-DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           A+ C   +R D +  D +    + +EIN  PGMT  S+ P+ A  AG S+ +LL  ++E 
Sbjct: 245 ALKCSVYARVDMMVKDGIP---YVMEINTLPGMTQSSLLPKSAEAAGISYSKLLDMIIET 301

Query: 296 ASCLR 300
           +  +R
Sbjct: 302 SLKVR 306


>gi|320094156|ref|ZP_08025969.1| D-alanine-D-alanine ligase [Actinomyces sp. oral taxon 178 str.
           F0338]
 gi|319978958|gb|EFW10488.1| D-alanine-D-alanine ligase [Actinomyces sp. oral taxon 178 str.
           F0338]
          Length = 378

 Score =  149 bits (375), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 85/260 (32%), Positives = 140/260 (53%), Gaps = 16/260 (6%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+   +LHG +GEDG +Q +LE+ E+ Y   G+ +SA+SMDK  +K V++  G+ V    
Sbjct: 114 DIVLPLLHGPYGEDGTIQGLLEMAEVRYVGCGVASSAVSMDKHLTKVVLAGAGIDVGRWE 173

Query: 112 LVNRFTMDSQH--------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
           L+     ++           +  P  +KP + GSS+GI  ++  + + + + ++   NH 
Sbjct: 174 LITPLQWEADQGACLERAAALGFPVFVKPCRAGSSVGISKVESREGLAVAVKEAQ--NHD 231

Query: 164 DQLLIEQYVDGIELTCGVMG------DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
            ++++E  V G E+ CGV+G       A+  + EI VP  +FY YE KY       V PA
Sbjct: 232 PRVIVEAGVVGREVECGVLGGRSDWRSATAPLGEIEVPDGEFYDYEHKYVDDVVGLVCPA 291

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
           ++     + V+  A  A  A+ C G++R DF  D  S  V   E+N  PG TP+S+FP+M
Sbjct: 292 EVAPAYEERVRETALRAFDALECEGLARVDFFLDEDSGTVLVNEVNTMPGFTPISMFPQM 351

Query: 278 AAYAGYSFRELLLWMVEDAS 297
            A AG  +  L+  ++E+A+
Sbjct: 352 WAAAGVDYPSLIDALLEEAA 371


>gi|42522180|ref|NP_967560.1| D-alanine-D-alanine ligase [Bdellovibrio bacteriovorus HD100]
 gi|81618354|sp|Q6MQ94|DDL_BDEBA RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|39574711|emb|CAE78553.1| D-alanine-D-alanine ligase [Bdellovibrio bacteriovorus HD100]
          Length = 365

 Score =  149 bits (375), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 97/344 (28%), Positives = 170/344 (49%), Gaps = 53/344 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS------------------- 41
           +A++ GG S+E EVSL S K  A AL+   F    I + +                    
Sbjct: 7   VALIFGGKSAEHEVSLRSAKNVADALDKDKFTPVLIGISKEGSWYRFPDMGVFTEATKIV 66

Query: 42  ----------VGLVLAHLKP-------------DLAFNVLHGNFGEDGLVQAILELLEIP 78
                     V L+    KP             D+AF +LHG  GEDG +Q + +++++P
Sbjct: 67  DSALPSKAEPVALMSLQGKPVLYSLKDHSKTAVDVAFPILHGTMGEDGTIQGLFKMVQLP 126

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI----SPPYVIKPLK 134
           +   G+ +SA  MDK   K++++   +P    +L+     +  + I      P+ IKP  
Sbjct: 127 FVGCGVWSSAAGMDKEIMKRLLAVAKIPNARYLLLTPHQKNDYNEIVKELGSPFFIKPAN 186

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI-- 192
            GSS+G+  IK  +   + L    ++    ++L E+++ G E+ C VMG        +  
Sbjct: 187 AGSSVGVHKIKTAEDFVVKL--KDAFQFDTKVLAEEFIQGREVECSVMGHNHAPKASLPG 244

Query: 193 -AVPKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
             +P+ +FYSYE KY   N   + +PA++  +  K VQ++A   +QA+GC G++R DF  
Sbjct: 245 EVIPQHEFYSYEAKYIDDNGALLKIPAELSPETTKAVQKMAEQTYQAMGCDGLTRVDFFI 304

Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            P + +++  EIN  PG T +S++P+M   +G S+++L+  +++
Sbjct: 305 RP-NGELYINEINTIPGFTKISMYPKMWEASGLSYKDLISQLIQ 347


>gi|47568737|ref|ZP_00239433.1| D-ala D-ala ligase [Bacillus cereus G9241]
 gi|228988793|ref|ZP_04148866.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|47554631|gb|EAL12986.1| D-ala D-ala ligase [Bacillus cereus G9241]
 gi|228770938|gb|EEM19431.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 304

 Score =  149 bits (375), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 94/305 (30%), Positives = 166/305 (54%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGG+SSE++VS+ +G    + L+   +++  I ++  + L+      D A   LHG
Sbjct: 3   IGVIMGGVSSEKQVSIMTGNEMIANLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---FT 117
            +GEDG VQ  LE L IPY+ S +L+S + MDK  SK+++   G+     I + +     
Sbjct: 63  KYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNISKKILRYEGIETPDWIELTKMEDLN 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGI-IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
           +D    +  P V+KP  GGSS+G+ IV  KD+ I + L     W+   +++IEQY+ G E
Sbjct: 123 LDELDKLGFPLVVKPNSGGSSVGVKIVYDKDELISM-LETVFEWDS--EVVIEQYIKGDE 179

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +TC ++    L +  I    ++F+ Y  KY   ++   +  ++P +I + V + +   ++
Sbjct: 180 ITCSILDGKQLPIVSIR-HAAEFFDYNAKYDDASTVEEV-IELPAEINERVNKASLACYK 237

Query: 237 AIGCRGISRSDFLF-DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           A+ C   +R D +  D +    + +E+N  PGMT  S+ P+ A  AG  + +LL  ++E 
Sbjct: 238 ALKCSVYARVDMMVKDGIP---YVMEVNTLPGMTQASLLPKSADAAGIHYSKLLDMIIET 294

Query: 296 ASCLR 300
           +  +R
Sbjct: 295 SLRVR 299


>gi|269123840|ref|YP_003306417.1| D-alanine/D-alanine ligase [Streptobacillus moniliformis DSM 12112]
 gi|268315166|gb|ACZ01540.1| D-alanine/D-alanine ligase [Streptobacillus moniliformis DSM 12112]
          Length = 299

 Score =  149 bits (375), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 89/299 (29%), Positives = 158/299 (52%), Gaps = 7/299 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV-LAHLKPDLAFNVLH 59
           + V+ GG+S+EREVS+++GK   + L+ + ++V +I++ +   +  +  L  D A+  LH
Sbjct: 3   IGVIYGGVSTEREVSINTGKEIIANLDKSKYEVVEIEISKKEDIFKVVDLNLDFAYIALH 62

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--FT 117
           G FGE G VQAILE   I Y+ SGIL+SA+ MDK  +K +  + GV +     + +    
Sbjct: 63  GEFGESGDVQAILETAGIKYSGSGILSSAICMDKDITKVLAKNSGVRIINGRCIKKGENI 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
             S   +    ++KP +GGSS+G+     D+ +   L +       +++LIE+   GIE+
Sbjct: 123 KFSDLNLGEKIILKPNRGGSSIGVYFATNDEELEYGLNEIFKLGE-NEVLIEEMKSGIEI 181

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           +  ++         I   K  F+ Y  KY +  +   +       +  E+      A+ A
Sbjct: 182 SVPIIAGKVFPTLLIEPLKDTFFDYTSKYENGGAKEYVYF-FEESLQNEINDFTIKAYNA 240

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           + C+G +R D++   +  K ++LE+N  PGMT  S+ P+   Y GYS+ E L  +++++
Sbjct: 241 VKCKGFARIDYIL--VDNKAYFLEVNTLPGMTKNSLLPKSTLYMGYSYSETLDLLIKES 297


>gi|229030300|ref|ZP_04186352.1| D-alanine--D-alanine ligase [Bacillus cereus AH1271]
 gi|228731017|gb|EEL81947.1| D-alanine--D-alanine ligase [Bacillus cereus AH1271]
          Length = 311

 Score =  149 bits (375), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 94/305 (30%), Positives = 167/305 (54%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGG+SSE++VS+ +G    + L+ + +++  I +D  + L+      D A   LHG
Sbjct: 10  IGVIMGGVSSEKQVSIMTGNEMIAHLDKSKYEIVPITLDEKMDLIEKAKDIDFALLALHG 69

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---FT 117
            +GEDG VQ  LE L IPY+ S +L+S + MDK  SK+++   GV     I + +     
Sbjct: 70  KYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNISKKILRYEGVETPDWIELTKMADLN 129

Query: 118 MDSQHLISPPYVIKPLKGGSSLGI-IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
           +D    +  P V+KP  GGSS+G+ IV  KD+ I + L     W+   +++IE+Y+ G E
Sbjct: 130 LDELDKLGFPLVVKPNSGGSSVGVKIVNDKDELISM-LETVFEWDS--EVVIEKYIKGDE 186

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +TC +     L +  I    ++F+ Y  KY  +++   +  ++P ++ + V + +   ++
Sbjct: 187 ITCSIFDGKQLPIISIR-HAAEFFDYNAKYDDVSTIEEV-IELPAELKERVNKASLACYR 244

Query: 237 AIGCRGISRSDFLF-DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           A+ C   +R D +  D +    + +E+N  PGMT  S+ P+ A  AG  + +LL  ++E 
Sbjct: 245 ALKCSVYARVDMMVKDGIP---YVMEVNTLPGMTQASLLPKSADAAGIQYSKLLDMIIET 301

Query: 296 ASCLR 300
           +  +R
Sbjct: 302 SLKIR 306


>gi|330973066|gb|EGH73132.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. aceris str.
           M302273PT]
          Length = 363

 Score =  149 bits (375), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 99/344 (28%), Positives = 175/344 (50%), Gaps = 55/344 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------------------- 40
           +A++ GG SSE EVSL S +   +A++   + ++ I VD+                    
Sbjct: 5   VAIVFGGQSSEHEVSLQSARNVINAIDRERYALTLIGVDKLGRWLHFDEADYLLNATDPA 64

Query: 41  ----------------SVGLVLAHLKP-------DLAFNVLHGNFGEDGLVQAILELLEI 77
                           S+G     ++        D+ F ++HG FGEDG +Q +L +L +
Sbjct: 65  RIKLSASGKPLSLLPGSIGGQFVDVESGQPLAVIDVVFPLIHGAFGEDGALQGVLRMLAV 124

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR-----FTMDSQHLISPPYVIKP 132
           P+  + +L+SA  MDK  +K+++   G+ V P  +++R     FT  +  L  P +V KP
Sbjct: 125 PFVGADVLSSAACMDKDVTKRLLRDAGIAVAPFRVLSRGESLSFTEAADQLGLPMFV-KP 183

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG--DASLDVT 190
              GSS+G+  +  +      L     ++H  +LLIEQ + G E+ C V+G  DA + V 
Sbjct: 184 ANQGSSVGVSKVSDEAGFAAALALGFEFDH--KLLIEQGIVGREVECAVLGNFDAQVSVC 241

Query: 191 EIAVPKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
              +   +FY+Y+ KY + +   + +PA++P D+  +V+ +A  A++ +GC G+SR DF 
Sbjct: 242 GEVIANDEFYAYDTKYLNGDQARIAIPAELPADLSDQVRDVALQAYKVLGCAGLSRVDF- 300

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           F    R +   E+N  PG T +S++P++   +G S+ EL+  ++
Sbjct: 301 FVTEGRDIIINEVNTLPGFTSISMYPKLWQASGLSYAELIHRLI 344


>gi|75764291|ref|ZP_00743831.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|74488221|gb|EAO51897.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
          Length = 311

 Score =  149 bits (375), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 95/305 (31%), Positives = 168/305 (55%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGG+SSE++VS+ +G    + L+   +++  I ++  + L+      D A   LHG
Sbjct: 10  IGVIMGGVSSEKQVSIMTGNEMIAHLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 69

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---FT 117
            +GEDG VQ  LE L IPY+ S +L+S++ MDK  SK+++   GV     I + +     
Sbjct: 70  KYGEDGTVQGTLESLGIPYSGSNMLSSSICMDKNISKKILRYEGVETPDWIELTKMEDLK 129

Query: 118 MDSQHLISPPYVIKPLKGGSSLGI-IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
           +D    +  P V+KP  GGSS+G+ IV  K++ I + L     W+   +++IE+Y+ G E
Sbjct: 130 LDELDKLGFPLVVKPNSGGSSVGVKIVYNKNELISM-LETVFEWDS--EVVIEKYIKGDE 186

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +TC ++    L +  I    ++F+ Y  KY   ++   +  ++P +I + V + +   ++
Sbjct: 187 ITCSILDGKQLPIVSIR-HAAEFFDYNAKYDDTSTVEEV-IELPAEINERVNKASLACYK 244

Query: 237 AIGCRGISRSDFLF-DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           A+ C   +R D +  D +    + +EIN  PGMT  S+ P+ A  AG S+ +LL  ++E 
Sbjct: 245 ALKCSVYARVDMMVKDGIP---YVMEINTLPGMTQSSLLPKSAEAAGISYSKLLDMIIET 301

Query: 296 ASCLR 300
           +  +R
Sbjct: 302 SLKVR 306


>gi|187777544|ref|ZP_02994017.1| hypothetical protein CLOSPO_01135 [Clostridium sporogenes ATCC
           15579]
 gi|187774472|gb|EDU38274.1| hypothetical protein CLOSPO_01135 [Clostridium sporogenes ATCC
           15579]
          Length = 300

 Score =  149 bits (375), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 96/297 (32%), Positives = 159/297 (53%), Gaps = 9/297 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGGIS+EREVSL+SG+     LE    ++  I +D+   ++      D AF  LHG
Sbjct: 3   IGVIMGGISTEREVSLNSGREVIKYLELLEHEIIPIIIDKKEDVMEKAKGIDFAFLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN---RFT 117
            FGEDG VQ++L+ L+IPY+  G L SA+ MDK  +K+++    +     + V+      
Sbjct: 63  EFGEDGTVQSVLQTLDIPYSGCGPLTSAICMDKDMTKKILKYANINTADWVNVSSVENID 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            ++   I  P  +KP  GGSS+   ++K  + I   +  +  ++   +++IE Y  G E+
Sbjct: 123 YEAIEKIGYPVFVKPNSGGSSVATNLVKNKEGIKEAVELALKYDK--EVMIENYTKGEEI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC ++    L V  I  P ++F+ Y  KY+   S  V+  ++  +++K+V+ +A    + 
Sbjct: 181 TCCMLNGKMLPVLAIR-PHAEFFDYTAKYADGGSDEVV-IELEENLHKKVEEMALACWKE 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           + C    R D +        + LE+N  PGMT  S+FP+ A   G SF ELL  +V+
Sbjct: 239 LKCEVYVRVDMIVK--EGVPYVLELNTLPGMTKNSLFPKSANAVGISFAELLDLIVK 293


>gi|148378455|ref|YP_001252996.1| D-alanine--D-alanine ligase [Clostridium botulinum A str. ATCC
           3502]
 gi|153932745|ref|YP_001382844.1| D-alanine--D-alanine ligase [Clostridium botulinum A str. ATCC
           19397]
 gi|153937340|ref|YP_001386411.1| D-alanine--D-alanine ligase [Clostridium botulinum A str. Hall]
 gi|168177798|ref|ZP_02612462.1| D-alanine--D-alanine ligase [Clostridium botulinum NCTC 2916]
 gi|226947688|ref|YP_002802779.1| D-alanine--D-alanine ligase [Clostridium botulinum A2 str. Kyoto]
 gi|166198478|sp|A7FPH8|DDL_CLOB1 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|166198479|sp|A5HYZ6|DDL_CLOBH RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|254767724|sp|C1FSC4|DDL_CLOBJ RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|148287939|emb|CAL82005.1| D-alanine--d-alanine ligase B [Clostridium botulinum A str. ATCC
           3502]
 gi|152928789|gb|ABS34289.1| D-alanine--D-alanine ligase [Clostridium botulinum A str. ATCC
           19397]
 gi|152933254|gb|ABS38753.1| D-alanine--D-alanine ligase [Clostridium botulinum A str. Hall]
 gi|182670658|gb|EDT82632.1| D-alanine--D-alanine ligase [Clostridium botulinum NCTC 2916]
 gi|226843805|gb|ACO86471.1| D-alanine--D-alanine ligase [Clostridium botulinum A2 str. Kyoto]
          Length = 300

 Score =  149 bits (375), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 96/293 (32%), Positives = 158/293 (53%), Gaps = 11/293 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGGIS+EREVSL+SG+     LE    ++  I +D+   ++      D AF  LHG
Sbjct: 3   IGVIMGGISTEREVSLNSGREVIKYLELLEHEIIPIIIDKKEDVMEKAKGIDFAFLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN---RFT 117
            FGEDG VQ++L+ L+IPY+  G L SA+ MDK  +K+++    +     + V+      
Sbjct: 63  KFGEDGTVQSVLQTLDIPYSGCGPLTSAICMDKDMTKKILKYANINTADWVNVSSVENID 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            ++   I  P  +KP  GGSS+   ++K  + I   +  +  ++   +++IE Y  G E+
Sbjct: 123 YEAIEKIGYPVFVKPNSGGSSVATNLVKDKEGIKEAVELALKYDK--EVMIENYTKGEEI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC ++    L V  I  P ++F+ Y  KY+   S  V+  ++  +++K+V+ +A    + 
Sbjct: 181 TCCMLNGKMLPVLAIR-PHAEFFDYTAKYADGGSDEVV-IELEENLHKKVEEMALACWKE 238

Query: 238 IGCRGISRSDFLF-DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           + C    R D +  D +    + LE+N  PGMT  S+FP+ A   G SF ELL
Sbjct: 239 LKCEVYVRVDMIVKDGIP---YVLELNTLPGMTKNSLFPKSANAVGISFAELL 288


>gi|261404734|ref|YP_003240975.1| D-alanine/D-alanine ligase [Paenibacillus sp. Y412MC10]
 gi|261281197|gb|ACX63168.1| D-alanine/D-alanine ligase [Paenibacillus sp. Y412MC10]
          Length = 364

 Score =  148 bits (374), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 95/298 (31%), Positives = 153/298 (51%), Gaps = 23/298 (7%)

Query: 8   ISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGL 67
            + + E+ L+ G+   +AL +A F     + +++V         D+ F +LHG FGEDG 
Sbjct: 61  FARQEELKLAEGEGTQTAL-NAVFSRLYGEENQAV---------DIMFPLLHGTFGEDGT 110

Query: 68  VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD-SQHLI-- 124
           +Q + E+ +IPY  +G+LASA  MDK+  K++ +  G+P C     NR   + SQH +  
Sbjct: 111 IQGLFEMADIPYVGTGVLASAAGMDKVVMKKLFAQAGLPQCEYCYFNRTQWERSQHEVLK 170

Query: 125 ------SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                   P  +KP   GSS+GI   K  + +   +   S+    D++++E++VD  E+ 
Sbjct: 171 NIEDKLGFPSFVKPANLGSSVGISKAKNREQLKAAI--ESALRFDDKIIVEEFVDAREVE 228

Query: 179 CGVMGDAS--LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
             V+G+      V    V  S++Y Y  KY+   S   +PA+I  D    ++ LA  A +
Sbjct: 229 VSVLGNDEPMASVPGEIVSSSEYYDYAAKYTDGQSQMQIPAEIDPDTADRLRDLAIAAFK 288

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           AI   GI+R+DF        +   E+N  PG TP S++P +    G S+RELL  M+E
Sbjct: 289 AIEGGGITRADFFVRRSDGAILINEVNTMPGFTPFSMYPLLWRETGVSYRELLDRMIE 346


>gi|66047146|ref|YP_236987.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. syringae
           B728a]
 gi|63257853|gb|AAY38949.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. syringae
           B728a]
          Length = 363

 Score =  148 bits (374), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 99/344 (28%), Positives = 175/344 (50%), Gaps = 55/344 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------------------- 40
           +A++ GG SSE EVSL S +   +A++   + ++ I VD+                    
Sbjct: 5   VAIVFGGQSSEHEVSLQSARNVINAIDRERYALTLIGVDKLGRWLHFDEADYLLNATDPA 64

Query: 41  ----------------SVGLVLAHLKP-------DLAFNVLHGNFGEDGLVQAILELLEI 77
                           S+G     ++        D+ F ++HG FGEDG +Q +L +L +
Sbjct: 65  RIKLSASGKPLSLLPGSIGGQFVDVESGQPLAAIDVVFPLIHGAFGEDGALQGLLRMLSV 124

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR-----FTMDSQHLISPPYVIKP 132
           P+  + +L+SA  MDK  +K+++   G+ V P  +++R     FT  +  L  P +V KP
Sbjct: 125 PFVGADVLSSAACMDKDVTKRLLRDAGIAVAPFRVLSRGESLSFTEAADQLGLPMFV-KP 183

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG--DASLDVT 190
              GSS+G+  +  +      L     ++H  +LLIEQ + G E+ C V+G  DA + V 
Sbjct: 184 ANQGSSVGVSKVSDEAGFAAALALGFEFDH--KLLIEQGIVGREVECAVLGNFDAQVSVC 241

Query: 191 EIAVPKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
              +   +FY+Y+ KY + +   + +PA++P D+  +V+ +A  A++ +GC G+SR DF 
Sbjct: 242 GEVIANDEFYAYDTKYLNGDQARIAIPAELPADLSDQVRDVALQAYKVLGCAGLSRVDF- 300

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           F    R +   E+N  PG T +S++P++   +G S+ EL+  ++
Sbjct: 301 FVTEGRDIIINEVNTLPGFTSISMYPKLWQASGLSYAELIHRLI 344


>gi|330898548|gb|EGH29967.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. japonica
           str. M301072PT]
          Length = 363

 Score =  148 bits (374), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 98/344 (28%), Positives = 175/344 (50%), Gaps = 55/344 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------------------- 40
           +A++ GG SSE EVSL S +   +A++   + ++ I VD+                    
Sbjct: 5   VAIVFGGQSSEHEVSLQSARNVINAIDRERYALTLIGVDKLGRWLHFDEADYLLNATDPA 64

Query: 41  ----------------SVGLVLAHLKP-------DLAFNVLHGNFGEDGLVQAILELLEI 77
                           S+G     ++        D+ F ++HG FGEDG +Q +L +L +
Sbjct: 65  RIKLSASGKPLSLLPGSIGGQFVEVESGQPLAAIDVVFPLIHGAFGEDGALQGLLRMLAV 124

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR-----FTMDSQHLISPPYVIKP 132
           P+  + +L+SA+ MDK  +K+++   G+ V P  +++R     FT  +  L  P +V KP
Sbjct: 125 PFVGADVLSSAVCMDKDVTKRLLRDAGIAVAPFRVLSRGDSLSFTEAADQLGLPMFV-KP 183

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG--DASLDVT 190
              GSS+G+  +  +      L     ++H  +LLIEQ + G E+ C V+G  D  + V 
Sbjct: 184 ANQGSSVGVSKVSDEAGFAAALALGFEFDH--KLLIEQGIVGREVECAVLGNVDVQVSVC 241

Query: 191 EIAVPKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
              +   +FY+Y+ KY + +   + +PA++P D+  +V+ +A  A++ +GC G+SR DF 
Sbjct: 242 GEVIANDEFYAYDTKYLNGDQARIAIPAELPADLSDQVREVALQAYKVLGCAGLSRVDF- 300

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           F    R +   E+N  PG T +S++P++   +G S+ EL+  ++
Sbjct: 301 FVTEGRDIIINEVNTLPGFTSISMYPKLWQASGLSYAELIHRLI 344


>gi|218897568|ref|YP_002445979.1| D-alanine--D-alanine ligase [Bacillus cereus G9842]
 gi|228901168|ref|ZP_04065370.1| D-alanine--D-alanine ligase [Bacillus thuringiensis IBL 4222]
 gi|218542332|gb|ACK94726.1| D-alanine--D-alanine ligase [Bacillus cereus G9842]
 gi|228858457|gb|EEN02915.1| D-alanine--D-alanine ligase [Bacillus thuringiensis IBL 4222]
          Length = 304

 Score =  148 bits (374), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 95/305 (31%), Positives = 168/305 (55%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGG+SSE++VS+ +G    + L+   +++  I ++  + L+      D A   LHG
Sbjct: 3   IGVIMGGVSSEKQVSIMTGNEMIAHLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---FT 117
            +GEDG VQ  LE L IPY+ S +L+S++ MDK  SK+++   GV     I + +     
Sbjct: 63  KYGEDGTVQGTLESLGIPYSGSNMLSSSICMDKNISKKILRYEGVETPDWIELTKMEDLK 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGI-IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
           +D    +  P V+KP  GGSS+G+ IV  K++ I + L     W+   +++IE+Y+ G E
Sbjct: 123 LDELDKLGFPLVVKPNSGGSSVGVKIVYNKNELISM-LETVFEWDS--EVVIEKYIKGDE 179

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +TC ++    L +  I    ++F+ Y  KY   ++   +  ++P +I + V + +   ++
Sbjct: 180 ITCSILDGKQLPIVSIR-HAAEFFDYNAKYDDTSTVEEV-IELPAEINERVNKASLACYK 237

Query: 237 AIGCRGISRSDFLF-DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           A+ C   +R D +  D +    + +EIN  PGMT  S+ P+ A  AG S+ +LL  ++E 
Sbjct: 238 ALKCSVYARVDMMVKDGIP---YVMEINTLPGMTQSSLLPKSAEAAGISYSKLLDMIIET 294

Query: 296 ASCLR 300
           +  +R
Sbjct: 295 SLKVR 299


>gi|18310297|ref|NP_562231.1| D-alanine--D-alanine ligase [Clostridium perfringens str. 13]
 gi|39931176|sp|Q8XKS9|DDLA_CLOPE RecName: Full=D-alanine--D-alanine ligase A; AltName:
           Full=D-Ala-D-Ala ligase A; AltName: Full=D-alanylalanine
           synthetase A
 gi|18144977|dbj|BAB81021.1| D-alanine-D-alanine ligase [Clostridium perfringens str. 13]
          Length = 301

 Score =  148 bits (374), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 94/297 (31%), Positives = 164/297 (55%), Gaps = 9/297 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGGISSERE+S+ SG +   AL+   ++   I ++    L+      D A   LHG
Sbjct: 3   VGVIMGGISSEREISIQSGNSVVHALDKDKYEAIPIVLNEKEDLIEKVKGIDFALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF-TMD 119
            FGEDG VQ++L+ L IP++  G L+SA+ MDK  +K++++   V      +V+    +D
Sbjct: 63  KFGEDGTVQSVLKTLGIPFSGCGPLSSAICMDKDMTKRILAFGNVRTARWEMVSSVDEID 122

Query: 120 SQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            + +  +  P  +KP  GGSS+   +++  +++   +L++  ++   +++IE+Y+ G E+
Sbjct: 123 YEKIENLGYPVFVKPNNGGSSVATTLVESKEAVKDAVLEALKYDT--EVMIEEYIKGDEI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC ++    L V  I  PK  F+    KY    +   +  ++  D++KEV+++A   ++ 
Sbjct: 181 TCPIIDGKMLPVLAIK-PKGKFFDIASKYGDGGADEFI-VELNEDLHKEVEKMALETYKL 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           + C   +R D L        + LE+N  PGMT  S+FP+ AA    SF ELL  ++E
Sbjct: 239 LKCDVYARVDMLVK--DNIPYVLEVNTLPGMTKNSLFPKSAAGINMSFEELLDTIIE 293


>gi|170757719|ref|YP_001780107.1| D-alanine--D-alanine ligase [Clostridium botulinum B1 str. Okra]
 gi|229463744|sp|B1IEG9|DDL_CLOBK RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|169122931|gb|ACA46767.1| D-alanine--D-alanine ligase [Clostridium botulinum B1 str. Okra]
          Length = 300

 Score =  148 bits (374), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 96/293 (32%), Positives = 158/293 (53%), Gaps = 11/293 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGGIS+EREVSL+SG+     LE    ++  I +D+   ++      D AF  LHG
Sbjct: 3   IGVIMGGISTEREVSLNSGREVIKYLELLEHEIIPIIIDKKEDVMEKAKGIDFAFLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN---RFT 117
            FGEDG VQ++L+ L+IPY+  G L SA+ MDK  +K+++    +     + V+      
Sbjct: 63  KFGEDGTVQSVLQTLDIPYSGCGPLTSAICMDKDMTKKILKYANINTADWVNVSSAENID 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            ++   I  P  +KP  GGSS+   ++K  + I   +  +  ++   +++IE Y  G E+
Sbjct: 123 YEAIEKIGYPVFVKPNSGGSSVATNLVKDKEGIKEAVELALKYDK--EVMIENYTKGEEI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC ++    L V  I  P ++F+ Y  KY+   S  V+  ++  +++K+V+ +A    + 
Sbjct: 181 TCCMLNGKMLPVLAIR-PHAEFFDYTAKYADGGSDEVV-IELEENLHKKVEEMALACWKE 238

Query: 238 IGCRGISRSDFLF-DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           + C    R D +  D +    + LE+N  PGMT  S+FP+ A   G SF ELL
Sbjct: 239 LKCEVYVRVDMIVKDGIP---YVLELNTLPGMTKNSLFPKSANAVGISFAELL 288


>gi|94971618|ref|YP_593666.1| D-alanine--D-alanine ligase [Candidatus Koribacter versatilis
           Ellin345]
 gi|94553668|gb|ABF43592.1| D-alanine--D-alanine ligase [Candidatus Koribacter versatilis
           Ellin345]
          Length = 393

 Score =  148 bits (374), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 97/283 (34%), Positives = 143/283 (50%), Gaps = 33/283 (11%)

Query: 29  AGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
           AG   S IDVD             + F VLHG FGEDG +Q + EL  IPY  +G+L SA
Sbjct: 110 AGHSASSIDVD-------------VIFPVLHGTFGEDGTIQGLFELANIPYVGAGVLGSA 156

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILV-----NRFTMDSQHLISP----PYVIKPLKGGSSL 139
             MDK   K +  + G+P+   + V      R     + L+      P  +KP   GSS+
Sbjct: 157 AGMDKDIMKALFKNAGLPIVKHMTVLRSQWQREPKKVKKLVESKLKYPVFVKPANLGSSV 216

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI-----ELTCGVMGDASLDVT---E 191
           GI      + +   L +++ ++   +L+IEQ V G      E+ C V+G+     +   E
Sbjct: 217 GISKAHDSKELGPALDEAAKFDR--KLVIEQGVGGKKKKAREIECSVLGNDEPKASVPGE 274

Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
           I VP  +FY Y  KY    S   +PAK+P    K+VQ LA  A QA+   G+ R DFL D
Sbjct: 275 I-VPIKEFYDYAAKYLDEGSALEIPAKLPKSTQKQVQELAIRAFQAVDGSGLGRVDFLID 333

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           P S K++  EIN  PG T +S++P++   +G  + +L+  ++E
Sbjct: 334 PKSNKLYVNEINTMPGFTSISMYPKLWEASGLKYTDLITRLIE 376


>gi|330950024|gb|EGH50284.1| D-alanyl-alanine synthetase A [Pseudomonas syringae Cit 7]
          Length = 363

 Score =  148 bits (374), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 99/344 (28%), Positives = 175/344 (50%), Gaps = 55/344 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------------------- 40
           +A++ GG SSE EVSL S +   +A++   + ++ I VD+                    
Sbjct: 5   VAIVFGGQSSEHEVSLQSARNVINAIDRERYALTLIGVDKLGRWLHFDEADYLLNATDPA 64

Query: 41  ----------------SVGLVLAHLKP-------DLAFNVLHGNFGEDGLVQAILELLEI 77
                           S+G     ++        D+ F ++HG FGEDG +Q +L +L +
Sbjct: 65  RIKLSASGKPLSLLPGSIGGHFVDVESGQPLAAIDVVFPLIHGAFGEDGALQGVLRMLAV 124

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR-----FTMDSQHLISPPYVIKP 132
           P+  + +L+SA  MDK  +K+++   G+ V P  +++R     FT  +  L  P +V KP
Sbjct: 125 PFVGADVLSSAACMDKDVTKRLLRDAGIAVAPFRVLSRGESLSFTEAADQLGLPMFV-KP 183

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG--DASLDVT 190
              GSS+G+  +  +      L     ++H  +LLIEQ + G E+ C V+G  DA + V 
Sbjct: 184 ANQGSSVGVSKVSDEAGFAAALALGFEFDH--KLLIEQGIVGREVECAVLGNFDAQVSVC 241

Query: 191 EIAVPKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
              +   +FY+Y+ KY + +   + +PA++P D+  +V+ +A  A++ +GC G+SR DF 
Sbjct: 242 GEVIANDEFYAYDTKYLNGDQARIAIPAELPADLSDQVRDVALQAYKVLGCAGLSRVDF- 300

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           F    R +   E+N  PG T +S++P++   +G S+ EL+  ++
Sbjct: 301 FVTEGRDIIINEVNTLPGFTSISMYPKLWQASGLSYAELIHRLI 344


>gi|120403135|ref|YP_952964.1| D-alanyl-alanine synthetase A [Mycobacterium vanbaalenii PYR-1]
 gi|190359169|sp|A1T708|DDL_MYCVP RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|119955953|gb|ABM12958.1| D-alanine--D-alanine ligase [Mycobacterium vanbaalenii PYR-1]
          Length = 367

 Score =  148 bits (374), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 101/297 (34%), Positives = 160/297 (53%), Gaps = 21/297 (7%)

Query: 14  VSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILE 73
           VS SSG   A A  D G +   + +  + G VLA +  D+ F VLHG +GEDG +Q +LE
Sbjct: 70  VSGSSGTELALA-ADPGRRGQLLSLGDAAGDVLAAV--DVVFPVLHGPYGEDGTIQGLLE 126

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN----RFTMDSQHLISPPYV 129
           L  +PY  +G+LASA  MDK  +K+++++ G+PV   +++       +++ +  +  P  
Sbjct: 127 LAGVPYVGAGVLASAAGMDKEFTKKLLTAAGLPVGDHVVLRPREATVSLEDRERLGLPVF 186

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG--DASL 187
           +KP +GGSS+G+  +    ++P  +    +  H  ++++E  + G EL CGV+   D  L
Sbjct: 187 VKPSRGGSSIGVSRVTAWDALPAAI--ELARRHDPKVIVEAAIPGRELECGVLEFPDGHL 244

Query: 188 D---VTEIAVP-----KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
           +   V EI V      +  FY +E KY    +   +PAK+   I + V+ LA  A  AI 
Sbjct: 245 EASTVGEIRVAGVRGREDGFYDFETKYLDDGAELDVPAKVDDAIAEAVRGLAIRAFDAID 304

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           C+G++R DF        +   EIN  PG T +S++P M A +G  +  LL  MVE A
Sbjct: 305 CQGLARVDFFLTDAGPVIN--EINTMPGFTTISMYPRMWAASGIDYPTLLATMVETA 359


>gi|7960291|gb|AAF71281.1|AF253562_5 ligase [Enterococcus faecalis]
          Length = 349

 Score =  148 bits (373), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 105/339 (30%), Positives = 162/339 (47%), Gaps = 54/339 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS------------------- 41
           +AV+ GG S+E EVSL S  A    +    F +  I + RS                   
Sbjct: 6   IAVIFGGNSTEYEVSLQSASAVFENINTNKFDIIPIGITRSGEWYHYTGEKEKILNNTWF 65

Query: 42  ------VGLVLAH-----------------LKPDLAFNVLHGNFGEDGLVQAILELLEIP 78
                   +V++                  +K DL F VLHG  GE+G +Q I EL  IP
Sbjct: 66  EDSKNLCPVVVSQNRSVKGFLEIASDKYRIIKVDLVFPVLHGKNGENGTLQGIFELAGIP 125

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-----QHLISPPYVIKPL 133
                 L+SAL MDK R+ ++VS  G+ V  S+   RF  ++     +  ++ P  IKP+
Sbjct: 126 VVGCDTLSSALCMDKDRAHKLVSLAGISVPKSVTFKRFNEEAAMKEIEANLTYPLFIKPV 185

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL---DVT 190
           + GSS GI  + + Q   LD     ++ H  ++++E+ ++G E+ C V+G   L    V 
Sbjct: 186 RAGSSFGITKVIEKQE--LDAAIELAFEHDTEVIVEETINGFEVGCAVLGIDELIVGRVD 243

Query: 191 EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
           EI +  S F+ Y  KY+  +S   +PA+I  +  K +Q  A   ++A+GC G SR D  +
Sbjct: 244 EIELS-SGFFDYTEKYTLKSSKIYMPARIDAEAEKRIQEAAVTIYKALGCSGFSRVDMFY 302

Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
            P S ++ + E+N  PG T  S +P M    G SF ++L
Sbjct: 303 TP-SGEIVFNEVNTIPGFTSHSRYPNMMKGIGLSFSQML 340


>gi|111225171|ref|YP_715965.1| D-alanyl-alanine synthetase A [Frankia alni ACN14a]
 gi|111152703|emb|CAJ64446.1| D-alanine-D-alanine ligase A [Frankia alni ACN14a]
          Length = 367

 Score =  148 bits (373), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 87/263 (33%), Positives = 139/263 (52%), Gaps = 17/263 (6%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+ F +LHG FGEDG +Q +LE+  +PY  SG+ ASA +MDK   K ++ + G+PV P  
Sbjct: 108 DVVFPLLHGPFGEDGTIQGLLEMAGVPYVGSGVFASAAAMDKQHMKSMLQAAGLPVGPYA 167

Query: 112 LV---NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168
           +V      +   Q  +  P  +KP +GGSS+GI   + D    LD    ++  +  ++L+
Sbjct: 168 VVRAGQTLSEADQDRLGLPVFVKPARGGSSIGI--SRVDAWADLDTAVKTARANDPKVLV 225

Query: 169 EQYVDGIELTCGVMGDASLDVTEIAVP-------KSDFYSYELKYSSLNSTHVLPAKIPL 221
           E  + G E+ CGV+G       + +VP        + FY +E KY S  +   +PA++  
Sbjct: 226 EAAITGREIECGVLGRLDGPGAQASVPAEITVTSATGFYDFEAKYVSDQTRFDIPARLSP 285

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYA 281
                V+++A  A +A+ C G++R D    P    V   E+N  PG TP S+FP M A +
Sbjct: 286 SALARVRQVAVAAFEALDCAGLARVDVFVTP-DDHVVVNEVNTMPGFTPTSMFPRMWAAS 344

Query: 282 GYSFRELLLWMV----EDASCLR 300
           G ++ +L+  +V     D + LR
Sbjct: 345 GITYPDLVDRLVRLALRDGAGLR 367


>gi|212550473|ref|YP_002308790.1| D-alanyl-alanine synthetase A [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
 gi|226726290|sp|B6YQA7|DDL_AZOPC RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|212548711|dbj|BAG83379.1| D-alanine-D-alanine ligase [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
          Length = 324

 Score =  148 bits (373), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 93/327 (28%), Positives = 165/327 (50%), Gaps = 41/327 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLA------------- 47
           +A++ GG SSE  +SL S +    +++   +    + + R+   V               
Sbjct: 4   VAIVSGGYSSECVISLKSAEEVYLSIDKTRYNPYIVLITRNGWTVQGGNKTEFPINKNDF 63

Query: 48  -------HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
                   ++ D A+ ++HG  GEDGL+Q  L++L IPY+  G+L+++++ +K      +
Sbjct: 64  SFIYKGKQIRFDFAYIIIHGTPGEDGLLQGYLDILNIPYSCCGVLSASITFNKYFCNNYL 123

Query: 101 SSCGVPVCPSILVNRFTMDSQHLISP---------PYVIKPLKGGSSLGIIVIKKDQSIP 151
              GV    SIL+ +     + +ISP         P ++KP  GGSS G+  +     I 
Sbjct: 124 RGFGVETAKSILLKQ----REQIISPERIIDKLGLPLIVKPNDGGSSFGVTKVTNITQIQ 179

Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYS 207
           L +   +++N G+ +LIE ++ G E+TCG         +L +TEI + K+DF+ +E KY+
Sbjct: 180 LAI--RNAFNEGEGVLIESFIPGTEITCGYYKTKNKQVTLPITEI-ISKNDFFDFEAKYN 236

Query: 208 SLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPG 267
                 + PA+I   +  E+Q L    +  +G +GI R D++  P  +++  LE+N  PG
Sbjct: 237 PGMVEEITPARISKKLTDEIQTLTAHIYDWVGAKGIIRIDYIISP-KKEIKMLEVNTIPG 295

Query: 268 MTPVSIFPEMAAYAGYSFRELLLWMVE 294
           MT  S  P+    AG + +E+L  ++E
Sbjct: 296 MTATSFIPQQIRAAGLNLKEILTEIIE 322


>gi|294056599|ref|YP_003550257.1| D-alanine/D-alanine ligase [Coraliomargarita akajimensis DSM 45221]
 gi|293615932|gb|ADE56087.1| D-alanine/D-alanine ligase [Coraliomargarita akajimensis DSM 45221]
          Length = 305

 Score =  148 bits (373), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 102/298 (34%), Positives = 155/298 (52%), Gaps = 12/298 (4%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62
           V+ GG+ +EREVSL+SG A A+ALE A F V ++ +D +           + F  LHG+F
Sbjct: 8   VMYGGVGTEREVSLNSGDAIAAALE-ANFPVERLRLDSAELPGTIDAATSIVFPALHGSF 66

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD-SQ 121
           GEDG +QA+++   I Y  SG  AS L MDK R+K++     + V  ++  +   +  + 
Sbjct: 67  GEDGQLQALMDAAGIEYCGSGAAASRLCMDKSRTKELARELNIRVPEAVTFSGTAVPLAD 126

Query: 122 HLI---SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            LI       VIKP   GSS+G+   +    + + L Q     H    L EQ + G ELT
Sbjct: 127 ALIDQLGSSLVIKPTDQGSSVGLFFTEHRSELGVTLSQI----HQGNWLAEQRIRGRELT 182

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
            GV+   ++ V EI +  S  Y Y  KY+  ++ +  PA++   +  ++Q+ A   + A 
Sbjct: 183 VGVLHGKAMGVVEI-ISSSGVYDYAAKYTPGSTEYRFPAELEASVTAQIQQQAEQIYAAC 241

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            CR  +R DFL D      ++LE+N  PG+T  S+ P+ AA  GY F  L   +V  A
Sbjct: 242 DCRDFARIDFLLD--GNAPYFLEVNTLPGLTATSLLPKSAACVGYDFESLARQLVSAA 297


>gi|322804734|emb|CBZ02286.1| D-alanine--D-alanine ligase [Clostridium botulinum H04402 065]
          Length = 300

 Score =  148 bits (373), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 96/293 (32%), Positives = 158/293 (53%), Gaps = 11/293 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGGIS+EREVSL+SG+     LE    ++  I +D+   ++      D AF  LHG
Sbjct: 3   IGVIMGGISTEREVSLNSGREVIKYLELLEHEIIPIIIDKKEDVMEKAKGIDFAFLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN---RFT 117
            FGEDG VQ++L+ L+IPY+  G L SA+ MDK  +K+++    +     + V+      
Sbjct: 63  EFGEDGTVQSVLQTLDIPYSGCGPLTSAICMDKDMTKKILKYSNINTADWVNVSSVENID 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            ++   I  P  +KP  GGSS+   ++K  + I   +  +  ++   +++IE Y  G E+
Sbjct: 123 YEAIEKIGYPVFVKPNSGGSSVATNLVKDKEGIKEAVELALKYDK--EVMIENYTKGEEI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC ++    L V  I  P ++F+ Y  KY+   S  V+  ++  +++K+V+ +A    + 
Sbjct: 181 TCCMLNGKMLPVLAIR-PHAEFFDYTAKYADGGSDEVV-IELEENLHKKVEEMALACWKE 238

Query: 238 IGCRGISRSDFLF-DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           + C    R D +  D +    + LE+N  PGMT  S+FP+ A   G SF ELL
Sbjct: 239 LKCEVYVRVDMIVKDGIP---YVLELNTLPGMTKNSLFPKSANAVGISFAELL 288


>gi|320161744|ref|YP_004174969.1| D-alanine--D-alanine ligase [Anaerolinea thermophila UNI-1]
 gi|319995598|dbj|BAJ64369.1| D-alanine--D-alanine ligase [Anaerolinea thermophila UNI-1]
          Length = 369

 Score =  148 bits (373), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 107/347 (30%), Positives = 172/347 (49%), Gaps = 53/347 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD------------------RSV 42
           + V+ GG S E EVSL S ++  + L    ++V+QI +                   +  
Sbjct: 7   VGVIFGGRSGEHEVSLMSSRSVLNVLSPEKYEVTQIGITLEGMWVTGENVWKALKSGQVK 66

Query: 43  GLVLAHLKP---------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTH 81
           GL  A L P                     D+ F VLHG FGEDG +Q +LE+ +  Y  
Sbjct: 67  GLSQAVLLPYPGETILYALRNGTLEPVTTLDVIFPVLHGTFGEDGTLQGLLEMADCAYVG 126

Query: 82  SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKP 132
           +G+L SA+ MDK   K V+ + G+PV  S+LV R  ++          + L   P+  KP
Sbjct: 127 AGVLGSAVGMDKGLFKDVMRAHGLPVADSVLVTRKQLEQNLSEVIEQVERLGEYPFFTKP 186

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDAS--LDV 189
              GSS+GI        +   LL+++ ++   ++LIE+ V D  E+   V+G+      V
Sbjct: 187 ANLGSSVGITKCHSRSELYEGLLEAARYDR--RILIERGVPDAREIEVSVLGNDEPIASV 244

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
               VP  +FYSYE KY    S  ++PA +   + + +++LA  A++AI C G++R DFL
Sbjct: 245 PGEIVPGDEFYSYEAKYLMETSKLLIPAPLSEALSERIRQLAIQAYRAIDCAGMARVDFL 304

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            +  + + F  EIN  PG T +S++P++   +G S+  L+  ++E A
Sbjct: 305 VNRNTGECFINEINTIPGFTAISMYPKLWEASGISYTALIDRLIELA 351


>gi|229159072|ref|ZP_04287126.1| D-alanine--D-alanine ligase [Bacillus cereus ATCC 4342]
 gi|228624398|gb|EEK81171.1| D-alanine--D-alanine ligase [Bacillus cereus ATCC 4342]
          Length = 304

 Score =  148 bits (373), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 94/305 (30%), Positives = 166/305 (54%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGG+SSE++VS+ +G    + L+   +++  I ++  + L+      D A   LHG
Sbjct: 3   IGVIMGGVSSEKQVSIMTGNEMIANLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---FT 117
            +GEDG VQ  LE L IPY+ S +L+S + MDK  SK+++   G+     I + +     
Sbjct: 63  KYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNISKKILRYEGIETPDWIELTKMEDLN 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGI-IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
           +D    +  P V+KP  GGSS+G+ IV  KD+ I + L     W+   +++IEQY+ G E
Sbjct: 123 LDELDKLGFPLVVKPNSGGSSVGVKIVYDKDELISM-LETVFEWDS--EVVIEQYIKGDE 179

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +TC ++    L +  I    ++F+ Y  KY   ++   +  ++P +I + V + +   ++
Sbjct: 180 ITCSILDGKPLPIVSIR-HAAEFFDYNAKYDDASTVEEV-IELPAEINERVNKASLACYK 237

Query: 237 AIGCRGISRSDFLF-DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           A+ C   +R D +  D +    + +E+N  PGMT  S+ P+ A  AG  + +LL  ++E 
Sbjct: 238 ALKCSVYARVDMMVKDGIP---YVMEVNTLPGMTRASLLPKSADAAGIHYSKLLDMIIET 294

Query: 296 ASCLR 300
           +  +R
Sbjct: 295 SLRVR 299


>gi|42781687|ref|NP_978934.1| D-alanine--D-alanine ligase [Bacillus cereus ATCC 10987]
 gi|217960060|ref|YP_002338618.1| D-alanine--D-alanine ligase [Bacillus cereus AH187]
 gi|42737610|gb|AAS41542.1| D-alanine--D-alanine ligase [Bacillus cereus ATCC 10987]
 gi|217067100|gb|ACJ81350.1| D-alanine--D-alanine ligase [Bacillus cereus AH187]
          Length = 304

 Score =  148 bits (373), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 94/305 (30%), Positives = 166/305 (54%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGG+SSE++VS+ +G    + L+   +++  I ++  + L+      D A   LHG
Sbjct: 3   IGVIMGGVSSEKQVSIMTGNEMIANLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---FT 117
            +GEDG VQ  LE L IPY+ S +L+S + MDK  SK+++   G+     I + +     
Sbjct: 63  KYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNISKKILRYEGIETPDWIELTKMEDLN 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGI-IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
           +D    +  P V+KP  GGSS+G+ IV  KD+ I + L     W+   +++IE+Y+ G E
Sbjct: 123 VDELDKLGFPLVVKPNSGGSSVGVKIVYDKDELISM-LETVFEWDS--EVVIEKYIKGDE 179

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +TC +     L +  I    ++F+ Y  KY   ++   +  ++P ++ + V + +   ++
Sbjct: 180 ITCSIFDGKQLPIISIR-HAAEFFDYNAKYDDTSTIEEV-IELPAELKERVNKASLACYK 237

Query: 237 AIGCRGISRSDFLF-DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           A+ C   +R D +  D +    + +EIN  PGMT  S+ P+ AA AG  + +LL  ++E 
Sbjct: 238 ALKCSVYARVDMMVKDGIP---YVMEINTLPGMTQASLLPKSAAAAGIEYSKLLDMIIET 294

Query: 296 ASCLR 300
           +  +R
Sbjct: 295 SLRVR 299


>gi|254283481|ref|ZP_04958449.1| D-alanine--D-alanine ligase [gamma proteobacterium NOR51-B]
 gi|219679684|gb|EED36033.1| D-alanine--D-alanine ligase [gamma proteobacterium NOR51-B]
          Length = 311

 Score =  148 bits (373), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 106/293 (36%), Positives = 154/293 (52%), Gaps = 12/293 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG ++ER VSL SG+  A+ L   G +V ++D   + G        D AFN+LHG
Sbjct: 11  LAVLLGGTAAERSVSLQSGENVATTLATTGAEVRRVDTADN-GWQQQLKGVDFAFNLLHG 69

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG VQ  LE   IPY+ SG+L SAL+MDK R+K + +  G+P    +L+NR + + 
Sbjct: 70  PGGEDGTVQGFLEYEGIPYSGSGVLGSALTMDKARTKWLWAGIGLPTPEFLLLNRDS-EW 128

Query: 121 QHLISP--PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           Q +I    P  +KP + GSS+G+        +      ++S  +G  ++ EQY++G E T
Sbjct: 129 QAIIDALGPVFVKPTREGSSIGMSHAASASELADAYDNAAS--YGTAVMAEQYIEGSEYT 186

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             ++GD +L    I    + FY +E KY S ++    P+ +       + +LA  A  A 
Sbjct: 187 VAILGDRALPSIRIETDAA-FYDFEAKYVSEDTRFFCPSGLAEQDEAALAQLALDAFAAT 245

Query: 239 GCRGISRSDFLFDPLSRKVFW--LEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           G     R D L     R   W  LE+N  PGMT  S+ P  A  AG S  ELL
Sbjct: 246 GASVWGRVDVL---RRRNGDWQLLEVNTVPGMTSHSLVPMAAKQAGLSMAELL 295


>gi|329924576|ref|ZP_08279621.1| D-ala D-ala ligase N-terminal domain protein [Paenibacillus sp.
           HGF5]
 gi|328940586|gb|EGG36907.1| D-ala D-ala ligase N-terminal domain protein [Paenibacillus sp.
           HGF5]
          Length = 364

 Score =  148 bits (373), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 94/298 (31%), Positives = 152/298 (51%), Gaps = 23/298 (7%)

Query: 8   ISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGL 67
            + + E+ L+ G+   +AL +A F     + +++V         D+ F +LHG FGEDG 
Sbjct: 61  FARQEELKLAEGEGTQTAL-NAVFSRLYGEENQAV---------DIMFPLLHGTFGEDGT 110

Query: 68  VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD-SQHLI-- 124
           +Q + E+ +IPY  +G+LASA  MDK+  K++ +  G+P C     NR   +  QH +  
Sbjct: 111 IQGLFEMADIPYVGTGVLASAAGMDKVVMKKLFAQAGLPQCEYCYFNRTQWERGQHEVLK 170

Query: 125 ------SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                   P  +KP   GSS+GI   K  + +   +   S+    D++++E++VD  E+ 
Sbjct: 171 NIEDKLGFPSFVKPANLGSSVGISKAKNREQLKAAI--ESALRFDDKIIVEEFVDAREVE 228

Query: 179 CGVMGDAS--LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
             V+G+      V    V  S++Y Y  KY+   S   +PA+I  D    ++ LA  A +
Sbjct: 229 VSVLGNDEPMASVPGEIVSSSEYYDYAAKYTDGQSQMQIPAEIDPDTADRLRDLAIAAFK 288

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           AI   GI+R+DF        +   E+N  PG TP S++P +    G S+RELL  M+E
Sbjct: 289 AIEGGGITRADFFVRRSDNAILINEVNTMPGFTPFSMYPLLWRETGVSYRELLDRMIE 346


>gi|238797705|ref|ZP_04641200.1| D-alanine--D-alanine ligase [Yersinia mollaretii ATCC 43969]
 gi|238718457|gb|EEQ10278.1| D-alanine--D-alanine ligase [Yersinia mollaretii ATCC 43969]
          Length = 289

 Score =  148 bits (373), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 102/288 (35%), Positives = 153/288 (53%), Gaps = 19/288 (6%)

Query: 14  VSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILE 73
           +SL SG+A  + L +AG     +D        L     D  F  LHG  GEDG +Q +LE
Sbjct: 1   MSLLSGQAVLAGLREAGIDAHGVDTKDFPVTQLKEQGFDKVFIALHGRGGEDGTLQGVLE 60

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP------- 126
            L +PYT SG++ASAL+MDK+R+K V  + G+P+ P + +NR   ++   +SP       
Sbjct: 61  FLGLPYTGSGVMASALTMDKLRTKWVWQALGLPISPYVALNRQQFET---LSPDELAARV 117

Query: 127 -----PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
                P ++KP   GSS+G+   K D +  L      ++ H   +LIE+++ G E T G+
Sbjct: 118 AKLGLPLIVKPSHEGSSVGM--SKVDHANELQGALVEAFRHDTDVLIEKWLSGPEFTVGI 175

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241
           +GD  L    I VP   FY YE KY S  + +  P+ +  ++ +++  LA  A+QA+GC 
Sbjct: 176 LGDDVLPSIRIQVPGV-FYDYEAKYLSDETQYFCPSGLSTELEQQLAALALQAYQALGCS 234

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           G  R D + D      + LE+N  PGMT  S+ P  A   G SF +L+
Sbjct: 235 GWGRVDVMQDS-DGNFYLLEVNTSPGMTSHSLVPMAARQYGLSFSQLV 281


>gi|257060565|ref|YP_003138453.1| D-alanyl-alanine synthetase A [Cyanothece sp. PCC 8802]
 gi|256590731|gb|ACV01618.1| D-alanine/D-alanine ligase [Cyanothece sp. PCC 8802]
          Length = 351

 Score =  148 bits (373), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 102/342 (29%), Positives = 167/342 (48%), Gaps = 51/342 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-------------DRSVGLVLA 47
           + +L GG S E EVSL+S +A A+AL+ +G    + D+               +   VL 
Sbjct: 6   VGLLFGGRSGEHEVSLNSARAIATALQ-SGENPQKYDIIPIYIQKNGVWQAGETAQQVLN 64

Query: 48  HLKP---------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
             KP                     D+ F +LHG  GEDG +Q +L L++ P+  SG+L 
Sbjct: 65  DAKPLPCEDATSQQLWTFPPQVSEVDVWFPILHGPNGEDGTLQGLLTLMQTPFVGSGVLG 124

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP------------PYVIKPLK 134
           SA+ MDK+  K   +  G+P    I V+R  + S   + P            P  +KP  
Sbjct: 125 SAVGMDKIAMKMAFAQAGLPQVKYIAVDRAQIWSNPCVFPKLCDEIEQGLGYPCFVKPAN 184

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA- 193
            GSS+GI  ++    +   L  ++S++   +++IE  V   E+ C V+G+ +   + I  
Sbjct: 185 LGSSVGIAKVRSRSELEKALDSAASYDR--RIVIETGVKAREVECAVLGNENPKASVIGE 242

Query: 194 -VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
               SDFY YE KY+   +   +PA++P  I  ++Q +A  A +A+   G++R DF +  
Sbjct: 243 ITYNSDFYDYEAKYTDGMAQMQIPAQLPDAIVTQIQDMAIQAFKAVDGAGLARVDFFYVE 302

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            S++VF  EIN  PG T  S++P++    G  F EL+  +++
Sbjct: 303 DSQEVFINEINTLPGFTAFSMYPQLWKETGVPFAELVDQLIQ 344


>gi|153941210|ref|YP_001389824.1| D-alanine--D-alanine ligase [Clostridium botulinum F str.
           Langeland]
 gi|166198480|sp|A7GAL4|DDL_CLOBL RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|152937106|gb|ABS42604.1| D-alanine--D-alanine ligase [Clostridium botulinum F str.
           Langeland]
 gi|295317911|gb|ADF98288.1| D-alanine--D-alanine ligase [Clostridium botulinum F str. 230613]
          Length = 300

 Score =  148 bits (373), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 95/293 (32%), Positives = 158/293 (53%), Gaps = 11/293 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + ++MGGIS+EREVSL+SG+     LE    ++  I +D+   ++      D AF  LHG
Sbjct: 3   IGIIMGGISTEREVSLNSGREVIKYLELLEHEIIPIIIDKKEDVMEKAKGIDFAFLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN---RFT 117
            FGEDG VQ++L+ L+IPY+  G L SA+ MDK  +K+++    +     + V+      
Sbjct: 63  EFGEDGTVQSVLQTLDIPYSGCGPLTSAICMDKDMTKKILKYANINTADWVNVSSVENID 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            ++   I  P  +KP  GGSS+   ++K  + I   +  +  ++   +++IE Y  G E+
Sbjct: 123 YEAIEKIGYPVFVKPNSGGSSVATNLVKDKEGIKEAVELALKYDK--EVMIENYTKGEEI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC ++    L V  I  P ++F+ Y  KY+   S  V+  ++  +++K+V+ +A    + 
Sbjct: 181 TCCMLNGKMLPVLAIR-PHAEFFDYTAKYADGGSDEVV-IELEENLHKKVEEMALACWKE 238

Query: 238 IGCRGISRSDFLF-DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           + C    R D +  D +    + LE+N  PGMT  S+FP+ A   G SF ELL
Sbjct: 239 LKCEVYVRVDMIVKDGIP---YVLELNTLPGMTKNSLFPKSANAVGISFAELL 288


>gi|85083381|ref|XP_957113.1| hypothetical protein NCU05127 [Neurospora crassa OR74A]
 gi|28881417|emb|CAD70534.1| hypothetical protein [Neurospora crassa]
 gi|28918198|gb|EAA27877.1| predicted protein [Neurospora crassa OR74A]
          Length = 346

 Score =  147 bits (372), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 100/332 (30%), Positives = 173/332 (52%), Gaps = 40/332 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKV--------------------SQIDVDR 40
           +A+++GG S E +VS+S+G A  + ++ A + +                     QI VDR
Sbjct: 9   IAIVVGGYSGEYDVSISTGNAIYANVDRARYNLYKIVIPRNPKAGWYHLTDNDKQIPVDR 68

Query: 41  ---SVGLVLAH-LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRS 96
              SV L     ++ DLA+  +HGN GE+G++Q   ++L +PYT  G   SAL+ +K   
Sbjct: 69  NDFSVTLSTGEKIQFDLAYISIHGNPGENGVLQGYFDMLGLPYTSCGFYTSALTANKGHC 128

Query: 97  KQVVSSCGV-PVCPSILVNRF---TMDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQS 149
             VV S GV  V  S L++R     +D + L+     P  +KP  GGSS+    +K  + 
Sbjct: 129 NPVVRSFGVVEVAKSRLLHRNQISALDPEALLFEFDLPVFVKPASGGSSVATTKVKSIEQ 188

Query: 150 IPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS-----LDVTEIAVPKSD--FYSY 202
           +   +  +   +   Q+L+E++++G E  CGV+ DA        +TE+ +P  D  ++ Y
Sbjct: 189 VVQAVEDAMREDGNGQVLVEEFIEGREFNCGVIRDAEGWLHVFPITEV-IPHGDSEYFDY 247

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
             KY+  +S+ V PA++   +   ++  + + +  + CRG+ R D+ ++P    +++LE+
Sbjct: 248 NAKYNG-SSSKVTPAEVETQVSDRIKDTSTMLYDLLDCRGVVRFDYRYNPELYALYFLEV 306

Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           N  PG TP SI P+ A  AG S  +L   ++E
Sbjct: 307 NTIPGQTPESIVPQQARAAGISTADLYHMVIE 338


>gi|168181325|ref|ZP_02615989.1| D-alanine--D-alanine ligase [Clostridium botulinum Bf]
 gi|237793779|ref|YP_002861331.1| D-alanine--D-alanine ligase [Clostridium botulinum Ba4 str. 657]
 gi|259645164|sp|C3L065|DDL_CLOB6 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|182675365|gb|EDT87326.1| D-alanine--D-alanine ligase [Clostridium botulinum Bf]
 gi|229260958|gb|ACQ51991.1| D-alanine--D-alanine ligase [Clostridium botulinum Ba4 str. 657]
          Length = 300

 Score =  147 bits (372), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 96/292 (32%), Positives = 156/292 (53%), Gaps = 9/292 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGGIS+EREVSL+SG+     LE    ++  I +D+   +V      D AF  LHG
Sbjct: 3   IGVIMGGISTEREVSLNSGREVIKYLELLEHEIIPIIIDKKEDVVEKVKGIDFAFLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---FT 117
            FGEDG VQ++L+ L+IPY+  G L SA+ MDK  +K+++    +     + V+      
Sbjct: 63  EFGEDGTVQSVLQTLDIPYSGCGPLTSAICMDKDMTKKILKYANINTADWVNVSSVEDID 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            ++   I  P  +KP  GGSS+   ++K    I   +  +  ++   +++IE Y  G E+
Sbjct: 123 YEAIEKIGYPVFVKPNSGGSSVATNLVKDGDGIKEAVELALKYDK--EVMIENYTKGEEI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC ++    L V  I  P ++F+ Y  KY+   S  V+  ++  +++K+V+ +A    + 
Sbjct: 181 TCCMLNGKMLPVLAIR-PHAEFFDYTAKYADGGSDEVV-IELEENLHKKVEEMALACWKE 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           + C    R D +    +   + LE+N  PGMT  S+FP+ A   G SF ELL
Sbjct: 239 LKCEVYVRVDMIVK--AGVPYVLELNTLPGMTKNSLFPKSANAVGISFAELL 288


>gi|154500220|ref|ZP_02038258.1| hypothetical protein BACCAP_03884 [Bacteroides capillosus ATCC
           29799]
 gi|150270952|gb|EDM98226.1| hypothetical protein BACCAP_03884 [Bacteroides capillosus ATCC
           29799]
          Length = 350

 Score =  147 bits (372), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 113/350 (32%), Positives = 167/350 (47%), Gaps = 56/350 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50
           + VL GG+S ER VSLS+G   A AL   G +V+ +D+   V    A L           
Sbjct: 3   IVVLAGGLSPERNVSLSTGTMVAEALTSLGHEVALVDMYFGVKEKGAELSGLFGAPISEE 62

Query: 51  --------PDLA----------------------------FNVLHGNFGEDGLVQAILEL 74
                   PDLA                            F  LHG+ GEDG VQA  +L
Sbjct: 63  HKRVSRQAPDLAAVKASRTEGGDSMFGPGVLELCGMADLVFLALHGSCGEDGRVQAAFDL 122

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-QHLISP---PYVI 130
           + IPYT SG L SA++MDK  +K++V+   V   P      +T D    L+     P V+
Sbjct: 123 MGIPYTGSGYLGSAIAMDKDLTKRMVAD--VVSTPGWKTVSYTADDIDGLVETARLPLVV 180

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190
           KP+  GSS+G+ +    + +   L +  +   G + ++EQYV G EL   ++ D +L   
Sbjct: 181 KPVASGSSIGVSIAHTAEELRTALTEGLAL--GGRTVLEQYVKGRELQVAILEDKALPSI 238

Query: 191 EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
           EI +PK  FY YE KY    +  V PA I  +  ++++  A   ++ +G    SR+DF+ 
Sbjct: 239 EI-IPKQGFYDYENKYQPGAAEEVCPADISPEAEQKLRDAAVRVYETLGLAVYSRADFIL 297

Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           D    + ++LEIN  PGMTP S+ P+ AA  G  +  L   +V+ +   R
Sbjct: 298 DA-DGEPWFLEINTLPGMTPTSLVPQEAAAVGIDYNTLCQRIVDASLAAR 346


>gi|302865483|ref|YP_003834120.1| D-alanine/D-alanine ligase [Micromonospora aurantiaca ATCC 27029]
 gi|302568342|gb|ADL44544.1| D-alanine/D-alanine ligase [Micromonospora aurantiaca ATCC 27029]
          Length = 377

 Score =  147 bits (372), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 101/351 (28%), Positives = 167/351 (47%), Gaps = 66/351 (18%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           + V+ GG S+E EVS +S    A AL + G +V  + + R+ G+ L              
Sbjct: 7   IGVVFGGPSAEHEVSCASALGVARALAEQGHRVVALGITRTGGIRLLPEPVLAQHLGTVT 66

Query: 47  -------------------------------------AHLKPDLAFNVLHGNFGEDGLVQ 69
                                                 H + D+ F VLHG +GEDG+VQ
Sbjct: 67  AGRAIDDRLPVTGPAVELRRGTTTGTVAVGAADAPATVHAELDVVFPVLHGPYGEDGVVQ 126

Query: 70  AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN----RFTMDSQHLI- 124
            +LE L +PY   GILASA+ MDK+  K+ + +  VP  P +  +    R   D + L+ 
Sbjct: 127 GLLESLGVPYVGCGILASAVGMDKVAMKRALRAEDVPTTPYVWFDEPTWRAASDPEKLVV 186

Query: 125 --SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS--SSWNHGDQLLIEQYVDGIELTCG 180
               P  +KP + GSS+GI  +        DL+ +   ++ H   +L+EQ V G EL CG
Sbjct: 187 GLRGPLFVKPARMGSSIGISRVADGD----DLVAAVEEAFRHDHVVLVEQGVTGRELECG 242

Query: 181 VMGDASLDVTEIAVPK--SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           V+G    + + +   +    ++ Y  KY       ++PA +P ++ + ++ L+  A  AI
Sbjct: 243 VLGGWQPEASAVGEVRVAGGWFDYRQKYFGDADPMIVPAPLPDEVTERIRELSVRAFTAI 302

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           G  G++R DFL+D  +  +F  E+N  PG T  S++P++ A +G ++ E++
Sbjct: 303 GGWGLARVDFLYDETTSDLFVNELNTLPGFTAHSMYPKVWAESGVAYPEVV 353


>gi|119357463|ref|YP_912107.1| D-alanyl-alanine synthetase A [Chlorobium phaeobacteroides DSM 266]
 gi|166198477|sp|A1BH06|DDL_CHLPD RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|119354812|gb|ABL65683.1| D-alanine--D-alanine ligase [Chlorobium phaeobacteroides DSM 266]
          Length = 363

 Score =  147 bits (372), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 87/261 (33%), Positives = 145/261 (55%), Gaps = 23/261 (8%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           DLAF  LHG++GEDG +Q +L+   IPYT  G+LASA++MDK  +K  V+  G+   P I
Sbjct: 101 DLAFIALHGSYGEDGRIQGLLDTFGIPYTGCGVLASAVAMDKALTKLCVTEAGIATAPGI 160

Query: 112 LVNRFTMDSQHLISP-------------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS 158
            +    + S++   P             P  +KP   GSS+GI  +     +   L   +
Sbjct: 161 TI----LSSEYFADPKSTQKSIEEQFTWPVFVKPASLGSSVGISKVHHIGELIAAL--ET 214

Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVL 215
           +  +  ++L+E+ + G E+   V+G+ + +V+   EI  P S+FY Y  KY    +   +
Sbjct: 215 ACRYDSKILVEKAMQGREVEVAVLGNNAPEVSITGEIE-PGSEFYDYADKYIHNAAKMYI 273

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275
           PA+I  ++ ++V++ A  A++A+GCRG+SR DF  D  S  +   E+N  PG T +S++P
Sbjct: 274 PARISPELQEQVRKDALRAYKALGCRGMSRIDFFVDETSGTIVLNEVNTIPGFTDISMYP 333

Query: 276 EMAAYAGYSFRELLLWMVEDA 296
            + A +G  F EL+  +++ A
Sbjct: 334 RLFAASGLPFNELVEKLLQFA 354


>gi|218248108|ref|YP_002373479.1| D-alanyl-alanine synthetase A [Cyanothece sp. PCC 8801]
 gi|226729271|sp|B7JZB2|DDL_CYAP8 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|218168586|gb|ACK67323.1| D-alanine/D-alanine ligase [Cyanothece sp. PCC 8801]
          Length = 351

 Score =  147 bits (372), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 103/342 (30%), Positives = 167/342 (48%), Gaps = 51/342 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-------------DRSVGLVLA 47
           + +L GG S E EVSL+S KA A+AL+ +G    + D+               +   VL 
Sbjct: 6   VGLLFGGRSGEHEVSLNSAKAIATALQ-SGENPQKYDIIPIYIQKNGVWQAGDTAQQVLN 64

Query: 48  HLKP---------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
             KP                     D+ F +LHG  GEDG +Q +L L++ P+  SG+L 
Sbjct: 65  DAKPLPCEDATSQQLWTFPPQVSEVDVWFPILHGPNGEDGTLQGLLTLMQTPFVGSGVLG 124

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP------------PYVIKPLK 134
           SA+ MDK+  K   +  G+P    I V+R  + S   + P            P  +KP  
Sbjct: 125 SAVGMDKIAMKMAFAQAGLPQVKYIAVDRAQIWSNPCVFPKLCDEIEQRLGYPCFVKPAN 184

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA- 193
            GSS+GI  ++    +   L  ++S++   +++IE  V   E+ C V+G+ +   + I  
Sbjct: 185 LGSSVGIAKVRSRSELEKALDSAASYDR--RIVIETGVKAREVECAVLGNENPKASVIGE 242

Query: 194 -VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
               SDFY YE KY+   +   +PA++P  I  ++Q +A  A +A+   G++R DF +  
Sbjct: 243 ITYNSDFYDYEAKYTDGMAQMHIPAQLPDAIVTQIQDMAIQAFKAVDGAGLARVDFFYVE 302

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            S++VF  EIN  PG T  S++P++    G  F EL+  +++
Sbjct: 303 DSQEVFINEINTLPGFTAFSMYPQLWKETGVPFAELVDQLIQ 344


>gi|51891650|ref|YP_074341.1| D-alanine--D-alanine ligase [Symbiobacterium thermophilum IAM
           14863]
 gi|51855339|dbj|BAD39497.1| D-alanine--D-alanine ligase [Symbiobacterium thermophilum IAM
           14863]
          Length = 366

 Score =  147 bits (372), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 101/345 (29%), Positives = 171/345 (49%), Gaps = 56/345 (16%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD----------------------- 39
           +L GG S E EVSL S +    AL+ + ++V  + +                        
Sbjct: 9   LLFGGRSGEHEVSLMSARNVLEALDRSKYEVIPVGITKEGRWLQVGDPLRALTEGVAAAG 68

Query: 40  -RSVGLV-----------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81
            R VGL+                  AH  P + F VLHG +GEDG +Q +LE+  +PY  
Sbjct: 69  GRPVGLLGDPSYSGPVPLSDGLRPAAHDGPVVFFPVLHGTYGEDGTIQGLLEMANVPYVG 128

Query: 82  SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD----------SQHLISPPYVIK 131
            G+LAS+++MDK  +K +    G+ V P  +  R   +          S HL  P +V K
Sbjct: 129 CGVLASSVAMDKGVAKALFRQAGLEVGPYRVYLRRDWERHPEQIRADVSAHLRYPVFV-K 187

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG--DASLDV 189
           P   GSS+GI  +K+ + +   + +++ ++   ++++EQ +D  E+   V+G  D    V
Sbjct: 188 PANLGSSVGITKVKRPEDLDRAMDEAARFDR--RIIVEQGIDAREIEVAVLGNDDPIASV 245

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
               +P ++FY Y  KY S  S   +PA +P D+ +E +R A +A +AI   G++R DF 
Sbjct: 246 PGEILPGAEFYDYTDKYFSGASQTRIPADLPDDLVEEFRRQAVVAFKAIDGSGMARVDFF 305

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            +  + ++F  E+N  PG T +S++P++   +G  + ELL  +++
Sbjct: 306 LERGTNRIFINEVNTIPGFTNISMYPKLWEASGIGYGELLDRLIQ 350


>gi|302185668|ref|ZP_07262341.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. syringae
           642]
          Length = 363

 Score =  147 bits (372), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 98/344 (28%), Positives = 175/344 (50%), Gaps = 55/344 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------------------- 40
           +A++ GG SSE EVSL S +   +A++   + ++ I VD+                    
Sbjct: 5   VAIVFGGQSSEHEVSLQSARNVINAIDRERYALTLIGVDKLGRWLHFDEADYLLNATDPA 64

Query: 41  ----------------SVGLVLAHLKP-------DLAFNVLHGNFGEDGLVQAILELLEI 77
                           S+G     ++        D+ F ++HG FGEDG +Q +L +L +
Sbjct: 65  RIKLSASGKPLSLLPGSIGGQFVEVESGQPLAAIDVVFPLIHGAFGEDGALQGLLRMLAV 124

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR-----FTMDSQHLISPPYVIKP 132
           P+  + +L+SA  MDK  +K+++   G+ V P  +++R     F   ++ L  P +V KP
Sbjct: 125 PFVGADVLSSAACMDKDVTKRLLRDAGIAVAPFRVLSRGESLSFKEAAEQLGLPMFV-KP 183

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG--DASLDVT 190
              GSS+G+  +  +      L     ++H  +LLIEQ + G E+ C V+G  DA + V 
Sbjct: 184 ANQGSSVGVSKVSDEAGFVAALALGFEFDH--KLLIEQGIVGREVECAVLGNFDAQVSVC 241

Query: 191 EIAVPKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
              +   +FY+Y+ KY + +   + +PA++P D+  +V+ +A  A++ +GC G+SR DF 
Sbjct: 242 GEVIANDEFYAYDTKYLNGDQARIAIPAEMPADLSDQVRDVALQAYKVLGCAGLSRVDF- 300

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           F    R +   E+N  PG T +S++P++   +G S+ EL+  ++
Sbjct: 301 FVTEGRDIIINEVNTLPGFTSISMYPKLWHASGMSYAELIHRLI 344


>gi|319941789|ref|ZP_08016111.1| D-alanine-D-alanine ligase [Sutterella wadsworthensis 3_1_45B]
 gi|319804722|gb|EFW01589.1| D-alanine-D-alanine ligase [Sutterella wadsworthensis 3_1_45B]
          Length = 319

 Score =  147 bits (372), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 105/299 (35%), Positives = 150/299 (50%), Gaps = 15/299 (5%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQID--VDRSVGLVLAHLKPDLAFNVLHG 60
           VL GGISSEREVSL SG+    AL   G +V   D  VD   GL       D AF  LHG
Sbjct: 14  VLEGGISSEREVSLLSGRGVKEALASKGLEVESWDPAVDSVGGLEEGAY--DAAFIALHG 71

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG VQ +L  + +PYT  G+ ASA++MDK  +K +  + G+ V   + +     D+
Sbjct: 72  TLGEDGSVQGLLNCIGLPYTGPGVTASAIAMDKELTKNIWRANGISVPAGVRLTAAASDA 131

Query: 121 Q------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL---LQSSSWNHGDQLLIEQY 171
           +         +   V+KP   GSS+G+  + +D      L   L +++     ++L+E+Y
Sbjct: 132 ELERAIAEFGADGVVVKPGHDGSSIGVTKLDRDALSLHSLRAALNAAAERDAAEVLVEEY 191

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++   +L V EI  P+   Y ++ KY +    +  PAK+P    K +    
Sbjct: 192 IHGREFTVAILDGKALPVIEICAPEGS-YDFQNKYYTDVVRYECPAKLPEASAKALAAAC 250

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             A   +GCRG SR D L +        LEIN  PGMTP S+ P  A   G S+ +L L
Sbjct: 251 EKAFAVLGCRGWSRVDAL-ERADGTFALLEINTSPGMTPHSLVPMAARAVGLSYADLCL 308


>gi|260654529|ref|ZP_05860019.1| D-alanine--D-alanine ligase B [Jonquetella anthropi E3_33 E1]
 gi|260630806|gb|EEX49000.1| D-alanine--D-alanine ligase B [Jonquetella anthropi E3_33 E1]
          Length = 321

 Score =  147 bits (372), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 108/299 (36%), Positives = 152/299 (50%), Gaps = 15/299 (5%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP-DLAFNVLHGN 61
           VL GG S EREVSL SG+A   AL+ AG++   ID+     +  A   P DL F VLHG+
Sbjct: 9   VLYGGNSPEREVSLVSGQAVEKALKSAGYETELIDLTGPEKVFEALKTPCDLFFPVLHGS 68

Query: 62  FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--FTMD 119
           +GEDG +QA L+L   PY  SG LAS L MDK  SK +    G+     +LV +   T D
Sbjct: 69  WGEDGRLQAALDLSGRPYVGSGPLASGLCMDKWASKALFDRAGLHTPKGVLVRQKDGTGD 128

Query: 120 SQHLISP-----PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
              L+         ++KP  GGS++   V+   + + L  L ++        L+E+++ G
Sbjct: 129 LPGLLRALERYGKLIVKPNCGGSTVATSVVSCSEEL-LPALNAAWEQKSGGALVEEFIPG 187

Query: 175 IELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            ELT  +     G  +L   EI +P S FY Y+ KY+   S +  PA++  +  + +   
Sbjct: 188 RELTVAMWDSGSGPEALPAVEI-LPASGFYDYQAKYTDGASRYESPARLSGEEARALSEA 246

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           A  A +A+G R   R+DF   P    V  LEIN  PGMT  S+ P  A  AG    + L
Sbjct: 247 AVAAWRAVGLRDYGRADFRLPPDGEPVL-LEINTAPGMTSHSLVPMAAKSAGMELPDFL 304


>gi|206602129|gb|EDZ38611.1| D-alanine--D-alanine ligase [Leptospirillum sp. Group II '5-way
           CG']
          Length = 303

 Score =  147 bits (372), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 97/301 (32%), Positives = 151/301 (50%), Gaps = 18/301 (5%)

Query: 5   MGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGE 64
           MGG S E  VS  SGKA   AL   G++   ++    +   L    PD+ F   HG  GE
Sbjct: 1   MGGDSPEAAVSRMSGKAVLEALRSRGYEAIPVEAGPDLFHTLLRTSPDVCFLATHGGHGE 60

Query: 65  DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI 124
           +G +Q  LE+L IPYT SG+L SAL M K  S+ +    G+ V  ++ +     ++   +
Sbjct: 61  NGALQGCLEVLGIPYTGSGVLGSALGMSKSASRALFRQGGLDVPETVAI-----EAGEKV 115

Query: 125 SP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
           +P       P+++KP   GSS+G+  +     +P  LL++    H  ++L+E ++ G E+
Sbjct: 116 TPDKIPFPLPFMVKPESAGSSIGVTRVDHFSDLPQALLEAE--KHSPRVLVEPFLAGREV 173

Query: 178 TCGVMGDASLDVTEIAVPKSD--FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
              ++    L   EI VP S   FY+Y  KY    S H+ PA +  D+   ++     A 
Sbjct: 174 QSAILDGRYLGAIEI-VPDSSEPFYTYASKYQKGKSRHIFPAPLTSDVAARLEEATLRAF 232

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
             +  RG++R D L     R V  LE+N  PG+T  S+ PE+A   G SF +L+  ++  
Sbjct: 233 GLLELRGVARMDTLVLENGR-VVVLEMNTLPGLTETSLVPEIARGCGLSFEDLVETILSS 291

Query: 296 A 296
           A
Sbjct: 292 A 292


>gi|228992138|ref|ZP_04152074.1| D-alanine--D-alanine ligase [Bacillus pseudomycoides DSM 12442]
 gi|228767867|gb|EEM16494.1| D-alanine--D-alanine ligase [Bacillus pseudomycoides DSM 12442]
          Length = 304

 Score =  147 bits (372), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 93/304 (30%), Positives = 164/304 (53%), Gaps = 11/304 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGG+SSE++VSL +G+   + L+ + ++V  I ++    LV      D+A   LHG
Sbjct: 3   VGVIMGGVSSEKQVSLMTGEEMIAHLDKSKYEVVPIKLNDKKELVEKVRNLDIALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN---RFT 117
            +GEDG +Q  LE L +PYT S +L+S + MDK  SK+++   G+     I ++      
Sbjct: 63  EYGEDGTIQGTLETLGVPYTGSVMLSSGICMDKNMSKKMIRYEGIQTPDWIHLSNTEELQ 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
           +D    +  P V+KP  GGSS+G+ ++    S+   L     W+   +++IE+Y+ G E+
Sbjct: 123 LDEIDKMGYPLVVKPNSGGSSVGVKIVYDKDSLLSSLEDVFKWD--SEIVIEKYIKGEEI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC ++    L +  I    ++F+ Y  KY  + +   +  ++P   Y+ V   A   ++A
Sbjct: 181 TCSILDGKLLPIISIQ-HTAEFFDYHAKYDDIATIEEV-VELPATTYERVVEAAMTCYRA 238

Query: 238 IGCRGISRSDFLF-DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           + C   +R D +  D +    + +E+N  PGMT  S+ P+ A  AG S+ +LL  ++E +
Sbjct: 239 LKCSVYARVDIIIKDGIP---YVMEVNTLPGMTKNSLLPKSAHAAGISYSKLLDMIIETS 295

Query: 297 SCLR 300
             +R
Sbjct: 296 LQVR 299


>gi|312133370|ref|YP_004000709.1| ddla [Bifidobacterium longum subsp. longum BBMN68]
 gi|311772595|gb|ADQ02083.1| DDlA [Bifidobacterium longum subsp. longum BBMN68]
          Length = 395

 Score =  147 bits (372), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 93/292 (31%), Positives = 154/292 (52%), Gaps = 26/292 (8%)

Query: 28  DAGFKVSQIDV-DRSVGLVLAHLKP-DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
           D+GF  S + + D  +  VL  L   D    VLHG +GEDG VQ +LE++ +PY   G+ 
Sbjct: 101 DSGFGTSFVSMSDPEMHHVLTSLGHVDAVLPVLHGPYGEDGTVQGLLEMMGVPYVGCGVF 160

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP--------PYVIKPLKGGS 137
           ASA  MDK  +K V+ + G+P  P + V+     +  +++         P  +KP + GS
Sbjct: 161 ASAACMDKHYTKVVLDAAGIPTAPGVTVDARNFTAADVLAEIEDAGLTYPLFVKPSRAGS 220

Query: 138 SLGIIVIKK--DQSIPLDLLQ---SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192
           S G+  ++K  D+    D L    +++  H  ++L+EQ +DG E+ C V+   + D  E 
Sbjct: 221 SFGVTKVEKADDRETQQDRLAAAIATAGEHDWKVLVEQGIDGREIECAVLCPKADDEPEA 280

Query: 193 AVP---------KSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
           + P            FY ++ KY   +++HV +PA +P+ + ++V+ +A  A +A+   G
Sbjct: 281 SWPGEIVLDHQNDDQFYDFDSKYMDASASHVEVPANLPVSVLEDVRDVARRAFKAVDGAG 340

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           +SR D    P    V   EIN  PG TP+S++P+    AG S+ EL+  ++E
Sbjct: 341 LSRVDTFVTP-DGTVMVNEINTMPGFTPISMYPKAWDAAGVSYTELITRLIE 391


>gi|229196783|ref|ZP_04323525.1| D-alanine--D-alanine ligase [Bacillus cereus m1293]
 gi|228586691|gb|EEK44767.1| D-alanine--D-alanine ligase [Bacillus cereus m1293]
          Length = 304

 Score =  147 bits (372), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 94/305 (30%), Positives = 166/305 (54%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGG+SSE++VS+ +G    + L+   +++  I ++  + L+      D A   LHG
Sbjct: 3   VGVIMGGVSSEKQVSIMTGNEMIAHLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---FT 117
            +GEDG VQ  LE L IPY+ S +L+S + MDK  SK+++   G+     I + +     
Sbjct: 63  KYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNVSKKILRYEGIETPDWIELTKMEDLN 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGI-IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
           +D    +  P V+KP  GGSS+G+ IV  KD+ I + L     W+   +++IE+Y+ G E
Sbjct: 123 VDELDKLGFPLVVKPNSGGSSVGVKIVYDKDELISM-LETVFEWDS--EVVIEKYIKGDE 179

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +TC +     L +  I    ++F+ Y  KY   ++   +  ++P ++ + V + +   ++
Sbjct: 180 ITCSIFDGKQLPIISIR-HAAEFFDYNAKYDDTSTIEEV-IELPAELKERVNKASLACYK 237

Query: 237 AIGCRGISRSDFLF-DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           A+ C   +R D +  D +    + +EIN  PGMT  S+ P+ AA AG  + +LL  ++E 
Sbjct: 238 ALKCSVYARVDMMVKDGIP---YVMEINTLPGMTQASLLPKSAAAAGIEYSKLLDMIIET 294

Query: 296 ASCLR 300
           +  +R
Sbjct: 295 SLRVR 299


>gi|198277497|ref|ZP_03210028.1| hypothetical protein BACPLE_03719 [Bacteroides plebeius DSM 17135]
 gi|198269995|gb|EDY94265.1| hypothetical protein BACPLE_03719 [Bacteroides plebeius DSM 17135]
 gi|254967003|gb|ACT97537.1| putative D-alanyl-alanine synthetase A [uncultured organism]
 gi|254967005|gb|ACT97538.1| putative D-alanyl-alanine synthetase A [uncultured organism]
          Length = 325

 Score =  147 bits (372), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 98/323 (30%), Positives = 162/323 (50%), Gaps = 33/323 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKV-----------------SQIDVDRSVG 43
           +A++ GG SSE  VS+ S +   S ++   + +                 S+  VD++  
Sbjct: 5   IAIVAGGDSSEHGVSMKSAEGIYSFIDQDKYTLYIVELTKARWEAILSDGSRAQVDKNDF 64

Query: 44  LVLAH---LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
             + H   + PD A+  +HG  GE+G++Q   ELL IPY+   +L SAL+  K    Q +
Sbjct: 65  SFMDHGQKIIPDFAYITIHGTPGENGILQGYFELLGIPYSTCDVLVSALTFSKFTLNQYL 124

Query: 101 SSCGVPVCPSILVN-RFTMDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
              GV V  S+LVN R  +  + +I+    P  IKP   GSS G+  +K  + I   L  
Sbjct: 125 KGFGVRVAESMLVNKRHGISDEDVIAKIGLPCFIKPNASGSSFGVTKVKTKEQIQPAL-- 182

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNST 212
            +++   D ++IE ++DGIEL  G       +    +TE+ V +++F+ Y  KY     T
Sbjct: 183 EAAFKESDDVMIEAFMDGIELANGCYKTKKNEVVFPITEV-VSQNEFFDYNAKYKG-EVT 240

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
            + PA++  ++   VQ+L    +  +GC+GI R D++      K+  LEIN  PGMT  S
Sbjct: 241 EITPARLSPELTSRVQQLTSAIYDILGCKGIVRVDYIITE-GEKINMLEINTTPGMTATS 299

Query: 273 IFPEMAAYAGYSFRELLLWMVED 295
             P+    AG   ++++  ++ED
Sbjct: 300 FIPQQVRAAGLDIKDVMTDIIED 322


>gi|209527619|ref|ZP_03276119.1| D-alanine/D-alanine ligase [Arthrospira maxima CS-328]
 gi|209491968|gb|EDZ92323.1| D-alanine/D-alanine ligase [Arthrospira maxima CS-328]
          Length = 358

 Score =  147 bits (371), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 110/344 (31%), Positives = 174/344 (50%), Gaps = 54/344 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASAL----EDAGFKVSQIDVDRS--------VGLVLAH 48
           +A+L GG S E EVS++S KA A+AL      + ++V  I ++++           VL  
Sbjct: 6   VALLFGGCSGEHEVSITSAKAIANALSIDPNPSKYEVVPIYIEKNGVWHRGTEAEAVLES 65

Query: 49  LKP----------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
            +P                      DL F +LHG  GEDG VQ +L L+++PY  SG+L 
Sbjct: 66  GQPLTVTGEVIPSDRIPDPATVKDIDLWFPILHGPNGEDGTVQGMLTLMQVPYVGSGVLG 125

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP------------PYVIKPLK 134
           SA+ MDK+  K   S  G+P      V R  + S   I P            P  +KP  
Sbjct: 126 SAVGMDKIAMKMAFSQAGIPQVRYQAVRRSQVWSNPCIFPKLCDDLDAALGYPCFVKPAN 185

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD----ASLDVT 190
            GSS+GI  ++  Q +   L  +++++   ++++E  V+  EL C V+G+    AS+ V 
Sbjct: 186 LGSSVGISKVRSRQELEAALDAAATYDR--RIIVEAGVEARELECAVLGNDYPKASV-VG 242

Query: 191 EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
           EI+   SDFY YE KY+   +  ++PA I   I  +V+ +A  A  A+   G++R DF +
Sbjct: 243 EISY-NSDFYDYETKYTDGKANLMIPAPIDTAIASKVRDMAIEAFLAVDAAGLARVDFFY 301

Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
              + +V   EIN  PG T +S++P++ +  G SF EL+  ++E
Sbjct: 302 IEKTGEVLLNEINTLPGFTALSMYPQLWSATGISFPELVNQLIE 345


>gi|17228475|ref|NP_485023.1| D-alanyl-alanine synthetase A [Nostoc sp. PCC 7120]
 gi|22095559|sp|Q8YY71|DDL_ANASP RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|17130326|dbj|BAB72937.1| D-alanyl-D-alanine ligase [Nostoc sp. PCC 7120]
          Length = 364

 Score =  147 bits (371), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 110/356 (30%), Positives = 169/356 (47%), Gaps = 66/356 (18%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV----DRSVGLVLAHLKP----- 51
           + +L GG S E EVS+SS +A ASAL  AG   S+ ++        G  LA   P     
Sbjct: 3   VGLLFGGRSGEHEVSISSARAIASAL-SAGENASKYEILPFYIHKDGRWLAGEAPQQVLK 61

Query: 52  --------------------------------------DLAFNVLHGNFGEDGLVQAILE 73
                                                 D+ F +LHG  GEDG +Q +L 
Sbjct: 62  SGAPLLESSNSSPAENNLVNSQQQTLERWQSPSQVAEVDVWFPILHGPNGEDGTIQGLLT 121

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP------- 126
           L++ P+  SG+L SAL MDK+  K      G+P      V R  + S   + P       
Sbjct: 122 LMQTPFVGSGVLGSALGMDKIAMKMAFEQAGLPQVKYKAVTRAQIWSNPCVFPKLCDEIE 181

Query: 127 -----PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
                P  +KP   GSS+GI  ++  Q +  D L +++ N+  +++IE  V   E+ C V
Sbjct: 182 ASLGYPCFVKPANLGSSVGISKVRSRQELE-DALDNAA-NYDRRIIIEAGVAAREVECAV 239

Query: 182 MGD---ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           +G+    +  V EI    SDFY YE KY++  +  ++PA IP DI +++Q +A  A  A+
Sbjct: 240 LGNDQPQASTVGEITF-NSDFYDYETKYTAGKADLLIPAIIPDDISRQIQNMALQAFAAV 298

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
              G++R DF +   + +V   EIN  PG T  S++P++ A++G  F EL+  +V+
Sbjct: 299 DAAGLARVDFFYVEATGEVLINEINTLPGFTATSMYPQLWAHSGIPFPELVDKLVQ 354


>gi|163846334|ref|YP_001634378.1| D-alanine--D-alanine ligase [Chloroflexus aurantiacus J-10-fl]
 gi|222524098|ref|YP_002568569.1| D-alanine/D-alanine ligase [Chloroflexus sp. Y-400-fl]
 gi|163667623|gb|ABY33989.1| D-alanine--D-alanine ligase [Chloroflexus aurantiacus J-10-fl]
 gi|222447977|gb|ACM52243.1| D-alanine/D-alanine ligase [Chloroflexus sp. Y-400-fl]
          Length = 356

 Score =  147 bits (371), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 103/346 (29%), Positives = 169/346 (48%), Gaps = 56/346 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR---------SVGLVLAHLKP 51
           +AV+ GG S E EVSL S  A  S L+ A +++  I + +         ++  ++A   P
Sbjct: 7   VAVVFGGQSGEHEVSLVSAHAVMSNLDPARYQIEAIGIGKDGQWWHGPGALAKLMAEADP 66

Query: 52  -------------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYT 80
                                          D+ F VLHG +GEDG +Q +LEL   PY 
Sbjct: 67  ARLPASAAQVAAGPVHALGRVGAPGWELPAADVIFPVLHGPYGEDGTIQGLLELAGRPYV 126

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH--------LISPPYVIKP 132
             G+ ASA+ MDK   K   ++ G+PV P +LV R  +  +          +  P  +KP
Sbjct: 127 GCGVAASAVGMDKGLMKAAFAAAGLPVLPWVLVRRSELADESGLCARLEAALRYPMFVKP 186

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT-- 190
              GSS+G+  ++    +   L +++ ++   +L++EQ +   E+   V+G+  +  +  
Sbjct: 187 ANLGSSVGVSKVRDRAELLAGLHEAARYDR--RLIVEQGIPAREIEISVLGNDEVVASIP 244

Query: 191 -EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
            EI +P  ++Y Y  KY    S  ++PA +      +VQ LA  A QAI   G++R DFL
Sbjct: 245 GEI-IPAGEWYDYHAKYIDGGSQTIVPADLSPAQITQVQELAMRAFQAIDGAGLARVDFL 303

Query: 250 FDPLSRKVFWL-EINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            D   +   W+ E+N  PG TP+S++P+M A +G S+ +LL  +V+
Sbjct: 304 LD-RDQGTLWVNEVNTMPGFTPISMYPKMWAASGLSYAQLLDRLVD 348


>gi|315506958|ref|YP_004085845.1| d-alanine/d-alanine ligase [Micromonospora sp. L5]
 gi|315413577|gb|ADU11694.1| D-alanine/D-alanine ligase [Micromonospora sp. L5]
          Length = 331

 Score =  147 bits (371), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 100/315 (31%), Positives = 157/315 (49%), Gaps = 24/315 (7%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62
           VL GG+S ER+VSL SG+    AL   G      D D ++   L    PD     LHG  
Sbjct: 23  VLAGGLSYERDVSLRSGRRVLDALRAVGVDAELRDADVALLPALTADPPDAVVIALHGAT 82

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFT--- 117
           GEDG ++ +L+L ++PY      +S L+ DK  +K V+   G+P    + +  +RF+   
Sbjct: 83  GEDGSLRGVLDLWDVPYVGCDARSSRLAWDKPSAKAVLREAGIPTPDWVALPHDRFSELG 142

Query: 118 --------MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
                   +D   L   P ++KP +GGS LG  V+++  S+P  ++   +++     L+E
Sbjct: 143 AVAVLDRIVDRLGL---PLMVKPAQGGSGLGAAVVREAASLPAAMVGCFAYDQ--TALVE 197

Query: 170 QYVDGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
           +YV G+++   V+    G  +L   EI VP++  Y Y  +Y++  +T   PA++      
Sbjct: 198 RYVPGMDVAVSVLDLGKGPQALPPVEI-VPRNGVYDYAARYTAGRTTWHAPARLDAATTA 256

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285
            V  +A  AH A+G R +SR D + D        LE+NV PGMT  S+ P     AG  F
Sbjct: 257 RVTEVALAAHTALGLRDVSRVDLIVD-AGGDPHVLEVNVSPGMTETSLLPLAIQAAGLDF 315

Query: 286 RELLLWMVEDASCLR 300
             +L  +V  A+  R
Sbjct: 316 GRVLGTLVTRAAARR 330


>gi|302870721|ref|YP_003839358.1| D-alanine/D-alanine ligase [Micromonospora aurantiaca ATCC 27029]
 gi|302573580|gb|ADL49782.1| D-alanine/D-alanine ligase [Micromonospora aurantiaca ATCC 27029]
          Length = 331

 Score =  147 bits (371), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 100/315 (31%), Positives = 157/315 (49%), Gaps = 24/315 (7%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62
           VL GG+S ER+VSL SG+    AL   G      D D ++   L    PD     LHG  
Sbjct: 23  VLAGGLSYERDVSLRSGRRVLDALRAVGVDAELRDADVALLPALTADPPDAVVIALHGAT 82

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFT--- 117
           GEDG ++ +L+L ++PY      +S L+ DK  +K V+   G+P    + +  +RF+   
Sbjct: 83  GEDGSLRGVLDLWDVPYVGCDARSSRLAWDKPSAKAVLREAGIPTPDWVALPHDRFSELG 142

Query: 118 --------MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
                   +D   L   P ++KP +GGS LG  V+++  S+P  ++   +++     L+E
Sbjct: 143 AVAVLDRIVDRLGL---PLMVKPAQGGSGLGAAVVREAASLPAAMVGCFAYDQ--TALVE 197

Query: 170 QYVDGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
           +YV G+++   V+    G  +L   EI VP++  Y Y  +Y++  +T   PA++      
Sbjct: 198 RYVPGMDVAVSVLDLGKGPQALPPVEI-VPRNGVYDYAARYTAGRTTWHAPARLDAATTA 256

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285
            V  +A  AH A+G R +SR D + D        LE+NV PGMT  S+ P     AG  F
Sbjct: 257 RVTEVALAAHTALGLRDVSRVDLIVD-AGGDPHVLEVNVSPGMTETSLLPLAIQAAGLDF 315

Query: 286 RELLLWMVEDASCLR 300
             +L  +V  A+  R
Sbjct: 316 GRVLGTLVTRAAARR 330


>gi|154500480|ref|ZP_02038518.1| hypothetical protein BACCAP_04152 [Bacteroides capillosus ATCC
           29799]
 gi|150270711|gb|EDM98007.1| hypothetical protein BACCAP_04152 [Bacteroides capillosus ATCC
           29799]
          Length = 350

 Score =  147 bits (371), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 115/346 (33%), Positives = 163/346 (47%), Gaps = 54/346 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKV--------------------------- 33
           +AVL GG S+E  VSL S  A  + L+ A + +                           
Sbjct: 6   IAVLFGGCSTEYPVSLQSAHAVITHLDRAKYDLVLLGITRDGRWLHYDGPVDHIPADTWH 65

Query: 34  --------SQIDVDRSVG--LVLAHLKP-----DLAFNVLHGNFGEDGLVQAILELLEIP 78
                   + I  DR     L+LA   P     D AF VLHG  GEDG VQ +LEL  IP
Sbjct: 66  RNAAHCTPALISPDRETHGLLLLAAAGPSVIRLDAAFPVLHGKNGEDGTVQGLLELAGIP 125

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT-----MDSQHLISPPYVIKPL 133
               G L SA+ MDK  + ++ +S G+ V  S L   +       D    +S P  +KP 
Sbjct: 126 VVGCGSLGSAVCMDKDVAHRLAASAGLAVPRSALFRSWEDPALLPDLTAGLSLPLFVKPA 185

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD---VT 190
           + GSS GI  +     +P  +  +++  H D+++IE+ V G E+ C V+G  +L    V 
Sbjct: 186 RSGSSFGITRVTDRADLPQAV--AAALEHDDKVVIEESVPGFEVGCAVLGTETLTVGRVD 243

Query: 191 EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
           EI + +  F+ Y  KY  L S   +PA+I  +    +Q+ A  A++A+GC G +R+DF F
Sbjct: 244 EIELTQG-FFDYTEKYQLLTSKIHMPARITPEDEARIQQAAVTAYRALGCTGCARADFFF 302

Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            P    VF  EIN  PG T  S +P M A  G  F  L+  +VE A
Sbjct: 303 TPEGEIVFN-EINTIPGFTSHSRYPAMMAGVGLDFSALVNRLVEQA 347


>gi|228965549|ref|ZP_04126631.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar sotto
           str. T04001]
 gi|228794142|gb|EEM41663.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar sotto
           str. T04001]
          Length = 304

 Score =  147 bits (371), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 95/305 (31%), Positives = 167/305 (54%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGG+SSE++VS+ +G    + L+   +++  I ++  + L+      D A   LHG
Sbjct: 3   IGVIMGGVSSEKQVSIMTGNEMIAHLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---FT 117
            +GEDG VQ  LE L IPY+ S +L+S++ MDK  SK+++   GV     I + +     
Sbjct: 63  KYGEDGTVQGTLESLGIPYSGSNMLSSSICMDKNISKKILRYEGVETPDWIELTKMEDLK 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGI-IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
           +D    +  P V+KP  GGSS+G+ IV  K++ I + L     W+   +++IE+YV G E
Sbjct: 123 LDELDKLGFPLVVKPNSGGSSVGVKIVYNKNELISM-LETVFEWDS--EVVIEKYVKGDE 179

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +TC ++    L +  I    ++F+ Y  KY   ++   +  ++P +I + V + +   ++
Sbjct: 180 ITCSILDGKQLPIVSIR-HAAEFFDYNAKYDDTSTVEEV-IELPAEINERVNKASLACYK 237

Query: 237 AIGCRGISRSDFLF-DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
            + C   +R D +  D +    + +EIN  PGMT  S+ P+ A  AG S+ +LL  ++E 
Sbjct: 238 VLKCSVYARVDMMVKDGIP---YVMEINTLPGMTQSSLLPKSAEAAGISYSKLLDMIIET 294

Query: 296 ASCLR 300
           +  +R
Sbjct: 295 SLKVR 299


>gi|168070642|ref|XP_001786885.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162660247|gb|EDQ48301.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 327

 Score =  147 bits (371), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 102/300 (34%), Positives = 164/300 (54%), Gaps = 11/300 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGG+SSEREVSL +GK     L+ + ++V  IDV +   L+      D A   LHG
Sbjct: 17  VGVIMGGVSSEREVSLMTGKEIVGRLDPSKYEVLPIDVAKREELIDRVRGIDFALLALHG 76

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--FTM 118
            FGEDG VQ +LE + IPY+ SG+L+S+L MDK  +K+V+ + G+     + ++R  FT 
Sbjct: 77  TFGEDGTVQGVLETMGIPYSGSGVLSSSLCMDKNLTKRVLKAEGIVTPDGVFLDRAMFTD 136

Query: 119 DSQHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
            +       ++ P  +KP  GGSS+G+  + + +++   L ++  W+    +++E  V G
Sbjct: 137 GTWESRLAGLTYPLFVKPNAGGSSIGVQRVDRQEALRAALAEAFRWDA--SVVVESMVTG 194

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
            E+TC ++    L V  I    ++++ YE KYS        P  +P D+   V+  A   
Sbjct: 195 QEITCPILDGELLPVLGIRSNGAEWFDYEAKYSD-GGAEERPITLPSDVEARVREAALAC 253

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           ++ + CR  +R D +        + LE+N  PGMT  S+ P  AA AG S+ ELL  ++E
Sbjct: 254 YRVLQCRVYARVDMILQ--DGVPYVLEVNTLPGMTANSLLPRSAAAAGMSYGELLDRIIE 311


>gi|116328043|ref|YP_797763.1| D-alanine--D-alanine ligase [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116331504|ref|YP_801222.1| D-alanine--D-alanine ligase [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
 gi|122280751|sp|Q04RK6|DDL_LEPBJ RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|122284165|sp|Q052B5|DDL_LEPBL RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|116120787|gb|ABJ78830.1| D-alanine--D-alanine ligase [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116125193|gb|ABJ76464.1| D-alanine--D-alanine ligase [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
          Length = 351

 Score =  147 bits (371), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 103/345 (29%), Positives = 159/345 (46%), Gaps = 56/345 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           +AV  GG S+E  +S+ +G      L   G  V  I + +  G V               
Sbjct: 4   IAVFFGGSSTEHSISIRTGCFICRTLHTMGHSVKPILLTQDGGWVVPLQYRISIPYEAVN 63

Query: 46  --------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
                               +++L  D+ F  LHG  GEDG +Q  L +L +PYT SG+ 
Sbjct: 64  SSDLFEEEFQKTNGVSKMDFISNLDADIVFLGLHGGKGEDGSIQGFLRVLGVPYTGSGVA 123

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNR--FTMDSQHLISP------PYVIKPLKGGS 137
           ASAL+MDK R+ Q+    G  V P   V +  +T   +  +        P  +KP++GGS
Sbjct: 124 ASALAMDKTRANQIFLQSGQKVAPFFEVEKLGYTNSPEETVIKLMSLGFPQFLKPVEGGS 183

Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--------MGDASLDV 189
           S+    I   + +   L  +  +    +++ + ++ G E++CGV        +   +L  
Sbjct: 184 SVSTYKITNQEQLSRQL--ALIFESDSKVMSQSFLAGTEVSCGVLERYRNGKLERIALPA 241

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
           TEI VP  +F+ +E KY    S  + PA+I       VQ LA  AH ++GCRG SRSDF+
Sbjct: 242 TEI-VPGGEFFDFESKYKQGGSREITPARISKQEMTRVQELAIDAHTSLGCRGYSRSDFI 300

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
              +  +   LE N  PGMT  S+ P+ A  AG +  E+   ++E
Sbjct: 301 I--VGGEPHILETNTLPGMTETSLIPQQAKAAGITMEEVFADLIE 343


>gi|161870650|ref|YP_001599823.1| D-alanine--D-alanine ligase [Neisseria meningitidis 053442]
 gi|161596203|gb|ABX73863.1| D-alanine--D-alanine ligase B [Neisseria meningitidis 053442]
          Length = 294

 Score =  147 bits (371), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 105/298 (35%), Positives = 157/298 (52%), Gaps = 13/298 (4%)

Query: 5   MGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD---LAFNVLHGN 61
           MGG SSERE+SL SG A  +AL+  G      D   +    L+ LK      AFN+LHG 
Sbjct: 1   MGGFSSEREISLDSGTAILNALKSKGIDAYAFDPKETP---LSELKAQGFQTAFNILHGT 57

Query: 62  FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-SILVNRFTMDS 120
           +GEDG VQ  LELL IPYT SG+ ASA+ MDK R K +  + G+PV   ++L +    D+
Sbjct: 58  YGEDGAVQGALELLGIPYTGSGVAASAIGMDKYRCKLIWQALGLPVPEFAVLHDDTDFDA 117

Query: 121 -QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
            +  +  P  +KP        + V+K      L  +     +   +++ E+++ G E +C
Sbjct: 118 VEEKLGLPMFVKP--AAEGSSVGVVKVKGKGRLKSVYEELKHLQGEIIAERFIGGGEYSC 175

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR-LAFLAHQAI 238
            V+    L    I +P ++FY YE KY+  ++ +  P++   +  + + R LA    QAI
Sbjct: 176 PVLNGKGLPGIHI-IPATEFYDYEAKYNRDDTIYQCPSEDLTEAEESLMRELAVRGAQAI 234

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           G     R DFL D    K++ LEIN  PGMT  S+ P+ AA  G  F +L + +++ A
Sbjct: 235 GAESCVRVDFLKD-TDGKLYLLEINTLPGMTSHSLVPKSAAVTGVGFADLCIEILKTA 291


>gi|283468514|emb|CAP18790.1| putative D-ala D-ala ligase [Prosthecobacter dejongeii]
          Length = 306

 Score =  147 bits (371), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 107/300 (35%), Positives = 159/300 (53%), Gaps = 15/300 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG  SEREVS  + ++  +AL+  G +V ++DV      V A     +A N++HG
Sbjct: 9   IAVLFGGPGSEREVSKKTAESVIAALKTKGAEVVEVDVTGPDFDVPADAL--IAMNLIHG 66

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119
            FGEDG +QAILE   IPYT +G+ +S ++ DK +SK+   + GVP   S     + +D 
Sbjct: 67  TFGEDGQLQAILEERGIPYTGAGVESSRIAFDKAQSKERFVAAGVPTPRS---QNYLLDG 123

Query: 120 SQHL-ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           SQ L IS P V KP + GSS+G+ + + +      + ++     G   L+E++V+G ELT
Sbjct: 124 SQPLDISIPLVSKPPREGSSVGVNICRTEAEWVSAIEEAKKC--GTSTLVEEFVEGKELT 181

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST----HVLPAKIPLDIYKEVQRLAFLA 234
            G++GD  L +  I  P   FY    KY  LN T    +  PA +     + VQ  A  A
Sbjct: 182 IGILGDQVLPIIHIE-PVDGFYDMSNKYPWLNGTGKTHYHCPADLDEATTRRVQEAAMAA 240

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            ++ G     R D +      + F LEIN  PGMT  S+ P+ A   G  F +L + ++E
Sbjct: 241 FKSCGTEVYGRVDVMLRN-DGEPFVLEINTIPGMTSSSLLPKAALAVGIEFPDLCVHIIE 299


>gi|222096144|ref|YP_002530201.1| d-alanine--d-alanine ligase [Bacillus cereus Q1]
 gi|221240202|gb|ACM12912.1| D-alanine--D-alanine ligase [Bacillus cereus Q1]
          Length = 304

 Score =  147 bits (370), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 94/305 (30%), Positives = 164/305 (53%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGG+SSE++VS+ +G    + L+   +++  I ++  + L+      D A   LHG
Sbjct: 3   IGVIMGGVSSEKQVSIMTGNEMIANLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---FT 117
            +GEDG VQ  LE L IPY+ S +L+S + MDK  SK+++   G+     I + +     
Sbjct: 63  KYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNMSKKILRYEGIETPDWIELTKMEDLD 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGI-IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
            D    +  P V+KP  GGSS+G+ IV  KD+ I + L     W+   +++IE+Y+ G E
Sbjct: 123 FDELDKLGFPLVVKPNSGGSSVGVKIVYDKDELISM-LETVFEWDS--EVVIEKYIKGDE 179

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +TC +     L +  I    ++F+ Y  KY    +   +  ++P ++ + V + +   ++
Sbjct: 180 ITCSIFDGKQLPIISIR-HAAEFFDYNAKYDDAGTIEEV-IELPAELKERVNKASLACYK 237

Query: 237 AIGCRGISRSDFLF-DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           A+ C   +R D +  D +    + +EIN  PGMT  S+ P+ AA AG  + +LL  ++E 
Sbjct: 238 ALKCSVYARVDMMVKDGIP---YVMEINTLPGMTQASLLPKSAAAAGIEYSKLLDMIIET 294

Query: 296 ASCLR 300
           +  +R
Sbjct: 295 SLRVR 299


>gi|313157691|gb|EFR57102.1| D-ala D-ala ligase N-terminal domain protein [Alistipes sp. HGB5]
          Length = 328

 Score =  147 bits (370), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 98/329 (29%), Positives = 172/329 (52%), Gaps = 35/329 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40
           +A++ GG S ERE++L S     SAL+   + ++ ID+                    D 
Sbjct: 6   IALMAGGDSPEREIALQSAAQIESALDHEKYDITVIDLHHRDWHYTAPDGRQWQVDKNDF 65

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           S+ +       D A  ++HG  GEDG +Q  L+++ +PY+   + +S ++ DK+ +K+ V
Sbjct: 66  SLTVEGERKVFDYALIIIHGTPGEDGRLQGYLDMMGVPYSSCSMTSSVITFDKVTTKRTV 125

Query: 101 SSCGVPVCPSILVNRF-TMDSQHLISP---PYVIKPLKGGSSLGII-VIKKDQSIPLDLL 155
           +  G+ +   I + +  T D   +I+    P  IKP   GSS G+  V  +D+ +P    
Sbjct: 126 AGRGINLAREIFLCKGETADPDEVIAEFGLPLFIKPNASGSSFGVTKVHTRDEVLPA--- 182

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD----VTEIAVPKSDFYSYELKYSSLNS 211
             +++   D++LIE+ ++G E+ CG+M     +    +TEI V K DF+ Y+ KY+   S
Sbjct: 183 VEAAFAQSDEVLIEECIEGREMGCGMMVAGGREYLFPITEI-VSKKDFFDYQAKYTEGYS 241

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271
             + PA+I  +I +E+ R+  +A++A  C G+ R DF+  P   K + +EIN  PGM+  
Sbjct: 242 DEITPAQIAPEIAEELHRMTRIAYKACRCSGVVRVDFIVTP-EGKPYMIEINSIPGMSAG 300

Query: 272 SIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           SI P+ A   G +  E+   ++ D +C +
Sbjct: 301 SIVPKQAKAMGMTLGEMFDLVIAD-TCRK 328


>gi|206973874|ref|ZP_03234792.1| D-alanine--D-alanine ligase [Bacillus cereus H3081.97]
 gi|206748030|gb|EDZ59419.1| D-alanine--D-alanine ligase [Bacillus cereus H3081.97]
          Length = 304

 Score =  147 bits (370), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 94/305 (30%), Positives = 164/305 (53%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGG+SSE++VS+ +G    + L+   +++  I ++  + L+      D A   LHG
Sbjct: 3   VGVIMGGVSSEKQVSIMTGNEMIANLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---FT 117
            +GEDG VQ  LE L IPY+ S +L+S + MDK  SK+++   G+     I + +     
Sbjct: 63  KYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNMSKKILRYEGIETPDWIELTKMEDLD 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGI-IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
            D    +  P V+KP  GGSS+G+ IV  KD+ I + L     W+   +++IE+Y+ G E
Sbjct: 123 FDELDKLGFPLVVKPNSGGSSVGVKIVYDKDELISM-LETVFEWDS--EVVIEKYIKGDE 179

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +TC +     L +  I    ++F+ Y  KY    +   +  ++P ++ + V + +   ++
Sbjct: 180 ITCSIFDGKQLPIISIR-HAAEFFDYNAKYDDAGTIEEV-IELPAELKERVNKASLACYK 237

Query: 237 AIGCRGISRSDFLF-DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           A+ C   +R D +  D +    + +EIN  PGMT  S+ P+ AA AG  + +LL  ++E 
Sbjct: 238 ALKCSVYARVDMMVKDGIP---YVMEINTLPGMTQASLLPKSAAAAGIEYSKLLDMIIET 294

Query: 296 ASCLR 300
           +  +R
Sbjct: 295 SLRVR 299


>gi|238916547|ref|YP_002930064.1| D-alanine-D-alanine ligase [Eubacterium eligens ATCC 27750]
 gi|238871907|gb|ACR71617.1| D-alanine-D-alanine ligase [Eubacterium eligens ATCC 27750]
          Length = 382

 Score =  147 bits (370), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 109/343 (31%), Positives = 164/343 (47%), Gaps = 58/343 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------------DRSVGLV 45
           + VL GG S+ER+VSL +G     +L   G + + +D+                  +G +
Sbjct: 42  IVVLAGGTSTERDVSLVTGYRVCESLRRNGHEANMLDIFLGVDDSEVKTFFTEKNDLGEL 101

Query: 46  LAHLKP-------------------------------DLAFNVLHGNFGEDGLVQAILEL 74
             +LK                                D+ F  LHG+ GEDG VQA  +L
Sbjct: 102 SDNLKKKTADIPAEVKRRTEARESFFGRNVLELCKEADMVFMGLHGSNGEDGKVQATFDL 161

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP---PYVIK 131
           L I YT +  L+SA+SM K  +K+V+   G+P+   +     T+   H I     P V+K
Sbjct: 162 LGIRYTGTDYLSSAISMSKELAKKVLVPEGIPMPKGV-----TLHKGHKIEYVPFPCVVK 216

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P  GGSS+G+ +   ++     L ++ S+   D +L+E++VDG E +  V+   +L V E
Sbjct: 217 PCCGGSSVGVSIAHNEKEFEDALDEAFSYE--DTVLVEEFVDGREFSVAVLDGKALPVIE 274

Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
           I  P   FY Y+ KY + ++    PA IP DI  ++Q  A    QA G    +R D L D
Sbjct: 275 IE-PLEGFYDYKNKYKAGSTKETCPANIPEDIASQMQFWAEKCCQAAGVTTYARVDELLD 333

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             +  +F LEIN  PGMT  S+ P+ AA  G S+ EL   ++E
Sbjct: 334 K-NNNIFCLEINTLPGMTDTSLIPQEAAAVGISYDELTEKIIE 375


>gi|227494178|ref|ZP_03924494.1| possible D-alanine--D-alanine ligase [Actinomyces coleocanis DSM
           15436]
 gi|226831912|gb|EEH64295.1| possible D-alanine--D-alanine ligase [Actinomyces coleocanis DSM
           15436]
          Length = 317

 Score =  147 bits (370), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 93/309 (30%), Positives = 166/309 (53%), Gaps = 33/309 (10%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62
           V+ GG++ ER+VSL SG+  A+ L   G  V   D++      +A  +PD+ + ++HG+ 
Sbjct: 9   VVAGGLTHERDVSLRSGRRVANLLRQLGHTVEVCDLNSQFLPTVAEFEPDVVWPLIHGSV 68

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV--------------- 107
           GEDG +Q +LEL+  PY  S   A  L+  K  +K + +  G+                 
Sbjct: 69  GEDGSIQDLLELVGFPYVGSRAHACVLASSKPTAKSLATIEGITTPAWISLTQSLFRQVG 128

Query: 108 CPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL 167
            P++L  +  + S+  +S P ++KP  GGS+LG+  +  +  +   ++   ++ +GD ++
Sbjct: 129 APAVL--QAILQSKDNLSFPLIVKPADGGSALGLSKVSSEDELRSAMVD--AFAYGDTVM 184

Query: 168 IEQYVDGIELTCGVMGDASLDVTEI-AVPKSDF------YSYELKYSSLNSTHVLPAKIP 220
           +EQ++ G E+   V+     D+ E+ A+P  +       Y Y+ +Y++  S    PA++ 
Sbjct: 185 VEQFIPGREIAVSVV-----DLDELYALPPVEIVTDDGRYDYDARYNTGRSQFFAPARLT 239

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280
            D   EVQR+A   H+ +G R +SR D +      +++ +++NV PGMT  S+FP+ A  
Sbjct: 240 ADETAEVQRVALEVHELLGLRHLSRVDLILGE-DGQIYLIDVNVAPGMTDTSLFPQAAEA 298

Query: 281 AGYSFRELL 289
           AG SFR++L
Sbjct: 299 AG-SFRDIL 306


>gi|118602742|ref|YP_903957.1| D-alanine--D-alanine ligase [Candidatus Ruthia magnifica str. Cm
           (Calyptogena magnifica)]
 gi|190359230|sp|A1AX29|DDL_RUTMC RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|118567681|gb|ABL02486.1| D-alanine--D-alanine ligase [Candidatus Ruthia magnifica str. Cm
           (Calyptogena magnifica)]
          Length = 293

 Score =  147 bits (370), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 104/295 (35%), Positives = 150/295 (50%), Gaps = 4/295 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG S+ER VSL SG+A   AL +      + D        L   + D AF VLHG
Sbjct: 2   IAVLMGGNSAERAVSLKSGEAVYQALINQNINCFEFDWHGYNLSELWQQEFDQAFIVLHG 61

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q  LE   I YT S   AS   +DK R+K +     + + PSI+ +      
Sbjct: 62  RGGEDGYIQKQLENRCIRYTGSDSNASHNGIDKARTKIIWKQHNLTLAPSIVASIHKPIE 121

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
                 P+++KP   GSS+GI   K D  I L+     +W +    LIEQ+++G E T  
Sbjct: 122 PIDFPLPWMVKPTLEGSSIGI--SKVDSQIQLNNALMLAWQYNSHALIEQWIEGDEYTVA 179

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           ++GD +L V +I +    FY YE KY S    ++ P  +     + +Q +A  A  AI  
Sbjct: 180 ILGDKALPVVKI-ITDQGFYDYESKYHSNKIQYLCPCGLSSSQEQVLQVIALKAFFAINA 238

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           +G  R DF+ +    K + LEIN  PGMT  S+ P  A   G SF +L++ ++ +
Sbjct: 239 KGWGRVDFIINQ-HNKPYLLEINTVPGMTSHSLVPMAAKAMGMSFNKLVVAIINE 292


>gi|227548098|ref|ZP_03978147.1| D-alanyl-alanine synthetase A [Corynebacterium lipophiloflavum DSM
           44291]
 gi|227079824|gb|EEI17787.1| D-alanyl-alanine synthetase A [Corynebacterium lipophiloflavum DSM
           44291]
          Length = 326

 Score =  147 bits (370), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 92/262 (35%), Positives = 146/262 (55%), Gaps = 27/262 (10%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+AF VLHG +GEDG +Q   EL  +PY   G+LASA +MDK  +K++VSS G+ V   +
Sbjct: 69  DVAFPVLHGMYGEDGTIQGFFELSGLPYVGPGVLASACAMDKEYTKRLVSSAGIAVTDEV 128

Query: 112 LVNRF-TMD--SQHLISPPYVIKPLKGGSSLGIIVIKK----DQSIPLDLLQSSSWNHGD 164
           +V R  ++D  ++  +  P  +KP +GGSS+G+  +      D +I +  LQS S     
Sbjct: 129 IVRRGESLDDATKQRLGLPVFVKPARGGSSIGVSKVSDWAELDDAIAV-ALQSDS----- 182

Query: 165 QLLIEQYVDGIELTCGVMG----------DASLDVTEIAVPKSDFYSYELKYSSLNSTHV 214
           + ++E  + G E+  GV+            A+L+ TE    +  FY +E KY     T  
Sbjct: 183 KAIVEAELVGDEVEVGVLEYPDGRVEASVPATLNGTEDG--EEGFYGFETKYLDEGVTAT 240

Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274
           +PA    ++ ++++ LA  A +A+GCRG+SR DF      R     EIN  PG TP+S++
Sbjct: 241 IPAPYSEEVTQQIRSLAITAFRALGCRGLSRVDFFL--TERGPVLNEINTMPGFTPISMY 298

Query: 275 PEMAAYAGYSFRELLLWMVEDA 296
           P++   +G S+ ELL  +++ A
Sbjct: 299 PQVWKASGVSYPELLHTLIQTA 320


>gi|291456019|ref|ZP_06595409.1| D-alanine--D-alanine ligase [Bifidobacterium breve DSM 20213]
 gi|291382428|gb|EFE89946.1| D-alanine--D-alanine ligase [Bifidobacterium breve DSM 20213]
          Length = 397

 Score =  147 bits (370), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 94/294 (31%), Positives = 155/294 (52%), Gaps = 30/294 (10%)

Query: 28  DAGFKVSQIDV-DRSVGLVLAHLKP-DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
           D+GF  S +++ D  +  VL  L   D    VLHG +GEDG VQ +LE++ +PY   G+ 
Sbjct: 103 DSGFGTSFVNLSDPEIHHVLTSLGHVDAVLPVLHGPYGEDGTVQGLLEMMGVPYVGCGVF 162

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP--------PYVIKPLKGGS 137
           ASA  MDK  +K V+++ G+P  P I+V+     +  +++         P  +KP + GS
Sbjct: 163 ASAACMDKHYTKVVLNAAGIPTAPGIMVDARAFTAADVVAQIEVAGLAYPLFVKPSRAGS 222

Query: 138 SLGIIVIKKDQSIPLDLLQ-------SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190
           S G  V K D++  L+  Q       +++  H  ++LIEQ +DG E+ C V+   + D  
Sbjct: 223 SFG--VTKVDKAEDLETQQDRVAAAIATAGEHDWKVLIEQGIDGREIECAVLCPKAGDEP 280

Query: 191 EIAVP---------KSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGC 240
           E + P            FY ++ KY   +++HV +PA +P+ + ++V+ +A  A +A+  
Sbjct: 281 EASWPGEIVLDHQNDDQFYDFDSKYMDASASHVEVPANLPVSVLEDVRDVARRAFKAVDG 340

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            G+SR D    P    V   EIN  PG TP+S++P+     G  + EL+  ++E
Sbjct: 341 AGLSRVDTFVTP-DGTVMVNEINTMPGFTPISMYPKAWDATGVGYTELITRLIE 393


>gi|304385279|ref|ZP_07367624.1| D-alanine--D-alanine ligase [Pediococcus acidilactici DSM 20284]
 gi|304328486|gb|EFL95707.1| D-alanine--D-alanine ligase [Pediococcus acidilactici DSM 20284]
          Length = 368

 Score =  147 bits (370), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 106/343 (30%), Positives = 169/343 (49%), Gaps = 66/343 (19%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------------------- 38
           +AVL GG S+ER VSLSSG     AL   G + + ID+                      
Sbjct: 20  IAVLAGGKSTERNVSLSSGSKITDALRAKGHEATMIDLFLGYDLQEGQTVEDVFETSNTD 79

Query: 39  --------------------DRSVGL----VLAHLKP-DLAFNVLHGNFGEDGLVQAILE 73
                               D +VGL    VL  L+  D  F  LHG  GE+G VQA+L+
Sbjct: 80  SDYEIQTDVLTDADIEKLRTDGTVGLFGKNVLEILRAADFVFLALHGGDGENGKVQAVLD 139

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF-TMDSQHLISP------ 126
           L +I YT SG LAS ++MDK  SK+++      +   I   RF  +  +  I P      
Sbjct: 140 LNDIKYTGSGTLASGIAMDKAISKEIM------LYNDIKTARFVVLHEEDGIHPQLDFGF 193

Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186
           P V+KP  GGSS+G +++  ++ +   L    ++   D++++E+++ G E + GV+ + +
Sbjct: 194 PVVVKPNSGGSSVGTMIVHDEEELADSL--RDAYRFDDEIIVEEFITGREFSLGVVNEQA 251

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
           +   EI V    +Y YE K+ +  +T  + P  I  +++ E++R+A    + +G     R
Sbjct: 252 MPAIEIVVNDG-WYDYEHKFKTGTTTQFITPPDIDEEVHDEMKRVAVKTMKVLGMTNYGR 310

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
            DFL +   + V+ +E N  PGMTP+S+ P+ A  AG S+ +L
Sbjct: 311 VDFLVN--DQGVYVIEANNLPGMTPLSLLPQEAEAAGISYEDL 351


>gi|296453460|ref|YP_003660603.1| D-alanine--D-alanine ligase [Bifidobacterium longum subsp. longum
           JDM301]
 gi|296182891|gb|ADG99772.1| D-alanine--D-alanine ligase [Bifidobacterium longum subsp. longum
           JDM301]
          Length = 395

 Score =  147 bits (370), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 93/292 (31%), Positives = 153/292 (52%), Gaps = 26/292 (8%)

Query: 28  DAGFKVSQIDV-DRSVGLVLAHLKP-DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
           D+GF  S + + D  +  VL  L   D    VLHG +GEDG VQ +LE++ +PY   G+ 
Sbjct: 101 DSGFGTSFVSMSDPEMHHVLTSLGHVDAVLPVLHGPYGEDGTVQGLLEMMGVPYVGCGVF 160

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP--------PYVIKPLKGGS 137
           ASA  MDK  +K V+ + G+P  P + V+     +  +++         P  IKP + GS
Sbjct: 161 ASAACMDKHYTKVVLGAAGIPTAPGVTVDARNFTAADVLAKIEDAGLTYPLFIKPSRAGS 220

Query: 138 SLGIIVIKK--DQSIPLDLLQ---SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192
           S G+  ++K  D+    D L    +++  H  ++L+EQ +DG E+ C V+   + D  E 
Sbjct: 221 SFGVTKVEKADDRETQQDRLAAAIATAGEHDWKVLVEQGIDGREIECAVLCPKAGDEPEA 280

Query: 193 AVP---------KSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
           + P            FY ++ KY   +++HV +PA +P+ + ++V+ +A  A +A+   G
Sbjct: 281 SWPGEIVLDHQNDDQFYDFDSKYMDASASHVEVPANLPVSVLEDVRDVARRAFKAVDGAG 340

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           +SR D    P    V   EIN  PG TP+S++P+     G S+ EL+  ++E
Sbjct: 341 LSRVDTFVTP-DGTVMVNEINTMPGFTPISMYPKAWDATGVSYTELITRLIE 391


>gi|260578997|ref|ZP_05846899.1| D-alanine--D-alanine ligase [Corynebacterium jeikeium ATCC 43734]
 gi|258602862|gb|EEW16137.1| D-alanine--D-alanine ligase [Corynebacterium jeikeium ATCC 43734]
          Length = 373

 Score =  147 bits (370), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 88/266 (33%), Positives = 140/266 (52%), Gaps = 19/266 (7%)

Query: 43  GLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS 102
           G V A +  D+ F VLHG  GEDG VQ +L+L  + Y  +G+LASA  MDK  +K++   
Sbjct: 113 GEVFAQV--DVVFPVLHGVNGEDGTVQGVLDLAGVRYVGNGVLASAAGMDKDFTKRLARE 170

Query: 103 CGVPVCPSILV---NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
            G+PV   +++      T + +  +  P  +KP +GGSS+GI   K D     D     +
Sbjct: 171 AGIPVGEELILLQPRELTAEEKARLGLPVFVKPARGGSSIGI--SKVDSWEEFDAAVDLA 228

Query: 160 WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP---------KSDFYSYELKYSSLN 210
           ++H +++++E  + G E+ CGV+  A   +   +VP            FY ++ KY    
Sbjct: 229 FSHDNKVIVEAMIHGAEVECGVLQHADGSIVS-SVPAMLNGTEDGAEGFYGFDAKYVDST 287

Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270
            +  +PA +P +  KE+++LA     A+GC GI+R DF            EIN  PG TP
Sbjct: 288 VSATIPAPLPAETLKEIRQLAIRTFNALGCDGIARVDFF--ATENGPVLNEINTMPGFTP 345

Query: 271 VSIFPEMAAYAGYSFRELLLWMVEDA 296
           +S++P+M A  G SF +L+  ++  A
Sbjct: 346 ISMYPKMFAADGVSFGDLVSALIARA 371


>gi|281356209|ref|ZP_06242702.1| D-alanine/D-alanine ligase [Victivallis vadensis ATCC BAA-548]
 gi|281317578|gb|EFB01599.1| D-alanine/D-alanine ligase [Victivallis vadensis ATCC BAA-548]
          Length = 702

 Score =  147 bits (370), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 95/294 (32%), Positives = 153/294 (52%), Gaps = 8/294 (2%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62
           +L+GG S+ERE+SL SG A A AL + GF V+  DV     L+    + D+ + VLHG F
Sbjct: 319 LLLGGASNEREISLKSGSAVAQALRNGGFDVTVTDVT-ECRLLPEMREADVVYPVLHGGF 377

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
           GEDG +Q ++E   + +  SG  AS L+MDK+ +K+++   G+P     +V R   +   
Sbjct: 378 GEDGRIQKVMEEAGLRFVGSGSAASLLTMDKIATKRLLDRLGIPTAKWSVVTRDRRELPQ 437

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            +  P ++K    GS+ GI+ +++ +    D      +    +LL+E+Y+DGIE+T  ++
Sbjct: 438 NLKLPLILKVPMEGSTFGIVKVERAEE--WDAALEKEFAMAGELLVEEYIDGIEITVPIV 495

Query: 183 GDASLDVTEIAVPKSDFYSYELK--YSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIG 239
               L   EI  P   FY Y+ K  Y   ++ +  PA+ +  +   +  R A   +   G
Sbjct: 496 NGEVLPAIEIKSPHG-FYDYDAKYVYKDGHTEYFCPARSLSAEQVADASRQAVKFYLGAG 554

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           CR I R DF+        + LE N  PG T  S+ P+ A  +G SF ++   +V
Sbjct: 555 CRDILRVDFIVGK-DGVPYMLEGNSIPGCTATSLVPKAAKVSGISFEKMTATLV 607


>gi|270291006|ref|ZP_06197229.1| D-alanine-D-alanine ligase [Pediococcus acidilactici 7_4]
 gi|270280402|gb|EFA26237.1| D-alanine-D-alanine ligase [Pediococcus acidilactici 7_4]
          Length = 351

 Score =  147 bits (370), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 106/343 (30%), Positives = 169/343 (49%), Gaps = 66/343 (19%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------------------- 38
           +AVL GG S+ER VSLSSG     AL   G + + ID+                      
Sbjct: 3   IAVLAGGKSTERNVSLSSGSKITDALRAKGHEATMIDLFLGYDLQEGQTVEDVFETSNTD 62

Query: 39  --------------------DRSVGL----VLAHLKP-DLAFNVLHGNFGEDGLVQAILE 73
                               D +VGL    VL  L+  D  F  LHG  GE+G VQA+L+
Sbjct: 63  SDYEIQTDVLTDADIEKLRTDGTVGLFGKNVLEILRAADFVFLALHGGDGENGKVQAVLD 122

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF-TMDSQHLISP------ 126
           L +I YT SG LAS ++MDK  SK+++      +   I   RF  +  +  I P      
Sbjct: 123 LNDIKYTGSGTLASGIAMDKAISKEIM------LYNDIKTARFVVLHEEDGIHPQLDFGF 176

Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186
           P V+KP  GGSS+G +++  ++ +   L    ++   D++++E+++ G E + GV+ + +
Sbjct: 177 PVVVKPNSGGSSVGTMIVHDEEELADSL--RDAYRFDDEIIVEEFITGREFSLGVVNEQA 234

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
           +   EI V    +Y YE K+ +  +T  + P  I  +++ E++R+A    + +G     R
Sbjct: 235 MPAIEIVVNDG-WYDYEHKFKTGTTTQFITPPDIDEEVHDEMKRVAVKTMKVLGMTNYGR 293

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
            DFL +   + V+ +E N  PGMTP+S+ P+ A  AG S+ +L
Sbjct: 294 VDFLVN--DQGVYVIEANNLPGMTPLSLLPQEAEAAGISYEDL 334


>gi|315445128|ref|YP_004078007.1| D-alanine--D-alanine ligase [Mycobacterium sp. Spyr1]
 gi|315263431|gb|ADU00173.1| D-alanine--D-alanine ligase [Mycobacterium sp. Spyr1]
          Length = 367

 Score =  147 bits (370), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 92/275 (33%), Positives = 150/275 (54%), Gaps = 20/275 (7%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           + +  + G VLA    D+ F VLHG +GEDG +Q +LEL  +PY  +G+LASA  MDK  
Sbjct: 91  VSLGEAAGEVLA--SADVVFPVLHGPYGEDGTIQGLLELAGVPYVGAGVLASAAGMDKEF 148

Query: 96  SKQVVSSCGVPVCPSILV----NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
           +K++++S G+PV   +++    +  ++  +  +  P  +KP +GGSS+G+  +     +P
Sbjct: 149 TKKLLASAGLPVGDHVVLRARDSTLSLQDRERLGLPVFVKPSRGGSSIGVSRVTAWDELP 208

Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG--DASLDVT---EIAVP-----KSDFYS 201
             +    +  H  +++IE  V G EL CGV+   D  L+ +   EI V      +  FY 
Sbjct: 209 AAI--ELARRHDPKVIIEAAVPGRELECGVLEFPDGHLEASTLGEIRVEGVRGREDGFYD 266

Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
           +E KY    +   +PAK+  D+ + ++ L+  A  AI C+G++R DF        +   E
Sbjct: 267 FETKYLDDGAELDVPAKVDDDVAEAIRALSLRAFTAIDCQGLARVDFFLTDDGPVIN--E 324

Query: 262 INVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           IN  PG T +S++P M A +G  ++ LL  MVE A
Sbjct: 325 INTMPGFTTISMYPRMWAASGVDYQTLLATMVETA 359


>gi|88856723|ref|ZP_01131378.1| D-alanine:D-alanine ligase [marine actinobacterium PHSC20C1]
 gi|88814020|gb|EAR23887.1| D-alanine:D-alanine ligase [marine actinobacterium PHSC20C1]
          Length = 372

 Score =  147 bits (370), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 95/276 (34%), Positives = 149/276 (53%), Gaps = 21/276 (7%)

Query: 35  QIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKM 94
           ++ V  S G   +    D+ F +LHG FGEDG VQ ++EL  +PY  +G+LAS++ M+K 
Sbjct: 95  ELTVTDSAGQTRSLGDVDVVFPILHGPFGEDGTVQGLIELTGLPYVGNGVLASSMGMNKH 154

Query: 95  RSKQVVSSCGVPVCPSILVNRFTMDSQH---------LISPPYVIKPLKGGSSLGIIVIK 145
            +K  + + GV V P + ++     S+H          +  P  +KP + GSS+G  V K
Sbjct: 155 FTKLALEAAGVAVAPWVTISAVQW-SRHPDVWRQRASSLGLPVFVKPARAGSSVG--VTK 211

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM-----GDASLDVT-EIAVPKSDF 199
              +  LD   ++++      L+EQ + G E+ CGV+     GD  + V  EI V   DF
Sbjct: 212 VTHADELDAALATAFAEDSTALVEQAMTGREIECGVLSGRDGGDTRVSVAGEIVVTGRDF 271

Query: 200 YSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
           Y +E KY  + +  ++ PA++      ++QR A  A +AIG  G++R DF FD     V 
Sbjct: 272 YDFEAKYLDVAAAELICPAELHDGELWQMQRTAARAFEAIGGAGLARVDFFFDGAEFVVN 331

Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             EIN  PG TP+S+FP+  A +G S+ EL+  ++E
Sbjct: 332 --EINTLPGFTPISMFPKCWAASGMSYPELIDELIE 365


>gi|257057908|ref|YP_003135740.1| D-alanine--D-alanine ligase [Saccharomonospora viridis DSM 43017]
 gi|256587780|gb|ACU98913.1| D-alanine--D-alanine ligase [Saccharomonospora viridis DSM 43017]
          Length = 316

 Score =  147 bits (370), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 99/310 (31%), Positives = 160/310 (51%), Gaps = 18/310 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG+S ER+VSL SG+  + AL D G  V + D D S+   L   KPD A   LHG
Sbjct: 6   VAVLAGGLSHERDVSLRSGRRLSVALRDQGLTVQEWDTDASLLDRLKTEKPDAAVVALHG 65

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117
             GE+G +Q +LE+L +P+  +       + DK  +K +VS  G      + +   T   
Sbjct: 66  GEGENGSIQTVLEMLGVPFVGTSSRGCRRAWDKPIAKALVSKAGFSTPDWVALPHSTFRE 125

Query: 118 MDSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           + +Q ++         P ++KP +GGS+LG  V++    +P  ++    + +GD +L E+
Sbjct: 126 LGAQPVLDAMVERLGLPLILKPDQGGSALGAQVVRDAADLPAAMV--GCFAYGDTVLAER 183

Query: 171 YVDGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE 226
           ++DG+E+   V+    G  +L   EI VP+   Y Y  +Y++  +    PA++  ++ + 
Sbjct: 184 FIDGVEVAVTVVEYEDGPKALPAVEI-VPEGGVYDYTARYTAGLTDFFAPARLSEEVAEA 242

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           V  LA  AH  +G R ISR+D +       V +LE+N  PG+T  S  P     AG S  
Sbjct: 243 VSDLAVSAHTLLGLRDISRTDAVVAS-DGTVHFLEVNSSPGLTETSTVPMALEAAGTSLG 301

Query: 287 ELLLWMVEDA 296
            +   +V+ A
Sbjct: 302 AVFTDLVQRA 311


>gi|300933868|ref|ZP_07149124.1| D-alanyl-alanine synthetase A [Corynebacterium resistens DSM 45100]
          Length = 379

 Score =  147 bits (370), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 93/269 (34%), Positives = 145/269 (53%), Gaps = 24/269 (8%)

Query: 43  GLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS 102
           G   AH+  D+ F VLHG  GEDG +Q + EL  IPY  +G+LASA  MDK  +K++   
Sbjct: 116 GRTYAHV--DVIFPVLHGQNGEDGTIQGLFELAGIPYVGNGVLASAAGMDKEYTKRLAKQ 173

Query: 103 CGVPVCPSILV--NR-FTMDSQHLISPPYVIKPLKGGSSLGIIVIK--KDQSIPLDLLQS 157
            GVP    +++  NR  T D Q  +  P  +KP +GGSS+GI  +   +D +  +++   
Sbjct: 174 AGVPCGEELILAENRELTEDEQQRLGLPVFVKPARGGSSIGISKVDTWEDFAHAVEI--- 230

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVM----------GDASLDVTEIAVPKSDFYSYELKYS 207
            +++H +++++E  + G E+ CGV+            A L+ TE       FY ++ KY 
Sbjct: 231 -AFDHDNKVIVEAMIHGREVECGVLQYPEGSVIASAPAMLEGTEDG--DEGFYGFDAKYL 287

Query: 208 SLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPG 267
               T  +PA I  +   EV+RLA    +A+ C G++R DF F   S +V   EIN  PG
Sbjct: 288 DNTVTPSIPAPIGEEATAEVRRLAVRTFEALNCEGLARVDF-FVTDSGEVILNEINTLPG 346

Query: 268 MTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            TP+S++P+M    G  + +LL  ++  A
Sbjct: 347 FTPISMYPQMFIAGGMGYPQLLDILIARA 375


>gi|285019572|ref|YP_003377283.1| D-alanine-D-alanine ligase [Xanthomonas albilineans GPE PC73]
 gi|283474790|emb|CBA17289.1| probable d-alanine-d-alanine ligase protein [Xanthomonas
           albilineans]
          Length = 319

 Score =  147 bits (370), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 101/299 (33%), Positives = 165/299 (55%), Gaps = 13/299 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP---DLAFNV 57
           +AVL+GG SSER+VSL+SG     AL   G     +D    +  +L  ++    D  FN+
Sbjct: 20  VAVLLGGSSSERDVSLTSGANVLDALRSRGVDAQPVD---GIAALLERIRAGAVDRVFNI 76

Query: 58  LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV--CPSILVNR 115
           LHG  GE+G++Q +L  L++P+T + +L SAL++DK+R+KQV  + G+P      I  + 
Sbjct: 77  LHGGDGENGVLQGLLRALQVPFTGADVLGSALTLDKIRTKQVWIAAGLPTPGFARIAADA 136

Query: 116 FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175
               +   +  P  +KP   GSS+G+  +    ++ L  +++ + ++  +LL+EQ V G 
Sbjct: 137 DLAAAAAELGYPLFVKPSCEGSSVGVFRVLS--AVDLAPVRAFAADYAGELLMEQMVQGE 194

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
           E T G++GD +L    I VP  D+Y Y  KY + ++ ++ P     D   ++++LA  A 
Sbjct: 195 EYTVGILGDIALPSIRI-VPVGDWYDYHAKYIAEDTQYLCPGLSGED-EVQIRQLALQAF 252

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            A GC G  R D + D + R +  +EIN  PGMT  S+ P+ AA+ G     L   ++E
Sbjct: 253 AAAGCSGWGRVDVMRDRV-RGLQLIEINTAPGMTSHSLVPKAAAHLGIDLASLCWRILE 310


>gi|218506497|ref|ZP_03504375.1| D-alanine--D-alanine ligase [Rhizobium etli Brasil 5]
          Length = 111

 Score =  146 bits (369), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 73/106 (68%), Positives = 85/106 (80%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSER VSLSSGKACA+ALE  GFKV+ IDV R V   LA LKPD+ FN LHG
Sbjct: 6   VAVLMGGFSSERPVSLSSGKACAAALEAEGFKVTCIDVARDVSEKLAALKPDVVFNALHG 65

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP 106
            FGEDG +Q ILE LEIPYTHSG+LASAL+MDK ++K V ++ G+P
Sbjct: 66  PFGEDGTIQGILEYLEIPYTHSGVLASALAMDKDKAKLVAAAAGIP 111


>gi|332298509|ref|YP_004440431.1| D-alanine--D-alanine ligase [Treponema brennaborense DSM 12168]
 gi|332181612|gb|AEE17300.1| D-alanine--D-alanine ligase [Treponema brennaborense DSM 12168]
          Length = 373

 Score =  146 bits (369), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 93/310 (30%), Positives = 156/310 (50%), Gaps = 26/310 (8%)

Query: 10  SEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH--LKPDLAFNVLHGNFGEDGL 67
           +E E   +   A  +  EDA   VS +    + GL      L  D+ F+VLHG +GEDG 
Sbjct: 52  TECERVRADAHAALTVAEDADALVSIVPGGGTEGLRTKKGTLPVDVVFSVLHGTYGEDGT 111

Query: 68  VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFTMDSQHL- 123
           +Q +L++  IPYT     +SAL+MDK ++KQ+     +PV P + +   +R   + + L 
Sbjct: 112 IQGLLDMTGIPYTGCSTASSALTMDKEKTKQIWRESRLPVLPHVCLKQRDRVNGNGESLQ 171

Query: 124 ---------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
                       P  +KP   GSS+G   + K+  +   + ++  W+  D++LIE  +D 
Sbjct: 172 KLMRQAETEFGYPLFVKPCGTGSSVGASKVSKETELEAAVAEAFRWD--DKILIEPAIDA 229

Query: 175 IELTCGVMGDASLDVTEIAV-------PKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKE 226
            E+ C V G+ S+   E+         P   FY Y+ KY+  N   + +PA +  +    
Sbjct: 230 REIECSVTGN-SVSGGEVTAYTPGEIKPSHTFYDYDAKYTDPNGAKLCIPADLSAEQLDV 288

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           V++ A  A++ + C G+SR DF  D  +  ++  EIN  PG T +S+FP+M   AG S+ 
Sbjct: 289 VRKTAVKAYETLDCSGLSRVDFFIDRKTGNLYLNEINTMPGFTSISMFPKMCEAAGLSYA 348

Query: 287 ELLLWMVEDA 296
           +L+  ++ + 
Sbjct: 349 DLVELIITEG 358


>gi|315645165|ref|ZP_07898291.1| D-alanine/D-alanine ligase [Paenibacillus vortex V453]
 gi|315279586|gb|EFU42891.1| D-alanine/D-alanine ligase [Paenibacillus vortex V453]
          Length = 364

 Score =  146 bits (369), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 85/254 (33%), Positives = 133/254 (52%), Gaps = 13/254 (5%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+ F +LHG FGEDG +Q + E+ +IPY  +G+LASA  MDK+  K++ +  G+P C   
Sbjct: 95  DIMFPLLHGTFGEDGTIQGLFEMADIPYVGTGVLASAAGMDKVVMKKLFAQAGLPQCEYC 154

Query: 112 LVNRFT---------MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
             NR            D +  +  P  +KP   GSS+GI   K  + +   +   S+   
Sbjct: 155 YFNRTQWEQGQYNVLKDIEDKLGFPSFVKPANLGSSVGISKAKNREQLKSAI--ESALRF 212

Query: 163 GDQLLIEQYVDGIELTCGVMGDAS--LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
            D++++E++VD  E+   V+G+      V    V  S++Y Y  KY+   S   +PA+I 
Sbjct: 213 DDKIIVEEFVDAREVEVSVLGNDEPMASVPGEIVSSSEYYDYAAKYTDGQSQMQIPAEIE 272

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280
            D+   ++ LA  A +AI   GI+R+DF        +   E+N  PG TP S++P +   
Sbjct: 273 PDVADRLRELAINAFKAIEGGGITRADFFVRRSDGAILINEVNTMPGFTPFSMYPLLWRE 332

Query: 281 AGYSFRELLLWMVE 294
            G S+RELL  M+E
Sbjct: 333 TGVSYRELLDRMIE 346


>gi|118468335|ref|YP_886735.1| D-alanyl-alanine synthetase A [Mycobacterium smegmatis str. MC2
           155]
 gi|6919860|sp|Q9ZGN0|DDL_MYCSM RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|166198492|sp|A0QUZ7|DDL_MYCS2 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|4092035|gb|AAC99396.1| D-alanine:D-alanine ligase [Mycobacterium smegmatis]
 gi|118169622|gb|ABK70518.1| D-alanine--D-alanine ligase [Mycobacterium smegmatis str. MC2 155]
          Length = 373

 Score =  146 bits (369), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 92/268 (34%), Positives = 147/268 (54%), Gaps = 20/268 (7%)

Query: 43  GLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS 102
           G +LA +  D+ F VLHG +GEDG +Q +LEL  +PY  SG+LASA  MDK  +K+++++
Sbjct: 104 GEILAAV--DVVFPVLHGPYGEDGTIQGLLELAGVPYVGSGVLASAAGMDKEYTKKLLAA 161

Query: 103 CGVPVCPSIL----VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS 158
            G+P+   ++    V    ++ +  +  P  +KP +GGSS+G+  +     +P  +  + 
Sbjct: 162 EGLPIGDQVVLRPGVETLDLEQRERLGLPVFVKPARGGSSIGVSRVTAWDELPAAV--AL 219

Query: 159 SWNHGDQLLIEQYVDGIELTCGVMG--DASLD---VTEIAVP-----KSDFYSYELKYSS 208
           +  H  ++++E  V G EL CGV+   D  L+   V EI V      +  FY +  KY  
Sbjct: 220 ARRHDPKVIVEAAVIGRELECGVLEFPDGRLEASTVGEIRVAGVRGREDGFYDFATKYLE 279

Query: 209 LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268
             +   +PAK+  D+  E+++LA  A  AIGC+G++R DF        +   EIN  PG 
Sbjct: 280 DAAELDVPAKVDDDVADEIRQLAVRAFTAIGCQGLARVDFFLTDDGPVIN--EINTMPGF 337

Query: 269 TPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           T +S++P M A  G  +  LL  MV+ A
Sbjct: 338 TTISMYPRMWAAGGIDYPTLLAAMVDTA 365


>gi|85858828|ref|YP_461030.1| D-alanine--D-alanine ligase [Syntrophus aciditrophicus SB]
 gi|85721919|gb|ABC76862.1| D-alanine--D-alanine ligase [Syntrophus aciditrophicus SB]
          Length = 352

 Score =  146 bits (369), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 104/340 (30%), Positives = 173/340 (50%), Gaps = 49/340 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------V 45
           + +++GG+SSEREVSL+SG+     L+   ++   + +D   GL               +
Sbjct: 7   VGIILGGMSSEREVSLNSGRNVYDNLDAEFYEGVPVFMDAQGGLWILPWHLISQNTTRDI 66

Query: 46  LAHLKP--------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSM 91
              LK               D AF  LHG +G+DG +Q +LELL IPYT  G++ASAL M
Sbjct: 67  TERLKGEARRIAYEDLKKEIDFAFISLHGKYGDDGCIQGLLELLRIPYTGPGVMASALGM 126

Query: 92  DKMRSKQVVSSCGVPVCPSILVN--RFTMDSQ-------HLISPPYVIKPLKGGSSLGII 142
           DK   ++++ + GV V  S+LV    +  DSQ            P   KP++ GSS+G+ 
Sbjct: 127 DKHLQQKILRAAGVAVPESLLVREEEWRQDSQIVKDRVKEFPGYPCFTKPIREGSSVGVT 186

Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS----LDVTEIAVPKSD 198
           V++ +  +   +  +  W+    +L+E+Y++G E +C V+ +      L++TEI  P+S+
Sbjct: 187 VVRDEADLERGMEDALKWDRA--VLVEEYLEGREFSCIVLEEEGQFHPLELTEIH-PQSE 243

Query: 199 FYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSD-FLFDPLSRK 256
           F++Y+ KY         P K IP D+ ++++     A +A+G R   R D F+ +    +
Sbjct: 244 FFTYDDKYMPGRCRKFTPPKTIPPDVTEQIKAEVIRAFKALGFRSYGRIDGFILN--DGR 301

Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +   + N   GM P S F E AA AG     ++  ++E+A
Sbjct: 302 ILITDPNSSSGMAPSSFFFEQAACAGMLPSMIITTLIENA 341


>gi|256398138|ref|YP_003119702.1| D-alanine/D-alanine ligase [Catenulispora acidiphila DSM 44928]
 gi|256364364|gb|ACU77861.1| D-alanine/D-alanine ligase [Catenulispora acidiphila DSM 44928]
          Length = 315

 Score =  146 bits (369), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 99/312 (31%), Positives = 160/312 (51%), Gaps = 24/312 (7%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62
           VL GG+S ER+VS+ SG+  A AL  AG +V   D+D ++   L   +PD  F  LHG  
Sbjct: 9   VLAGGLSHERDVSIRSGRRVADALRSAGVEVQVRDIDAALLPSLLADRPDAVFPTLHGAT 68

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT----- 117
           GEDG VQ IL LL +PY  S   A   + DK  +K  + + G+     + + + T     
Sbjct: 69  GEDGAVQGILALLGVPYVGSSAAACRRAFDKPSAKDAIRTAGLATPDWVAIPKTTFRDLG 128

Query: 118 ----MDSQHLISP-PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
               +D+     P P  +KP +GGSSLG   +   + +P  ++   +++  +  LIE+++
Sbjct: 129 THAVLDAVSAALPMPLFVKPARGGSSLGAAAVHTREDLPSAMVACFAYD--ETALIERHI 186

Query: 173 DGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
            G E+   V+    G  +L   EI V  S  Y Y  +Y++  +    PA++  +  K V+
Sbjct: 187 TGREIAVSVVDTGTGPQALPAVEI-VADSGVYDYAARYTAGITEFFAPARLTAEEAKSVE 245

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYA----GY 283
           +LA  AH  +    +SR+D + D  +  + W LE+NV PG+T  S+ P  A  A    G 
Sbjct: 246 QLAVRAHTTLDLSCVSRTDLILD--ADGIPWFLEVNVAPGLTETSLLPLAAGAADLDLGV 303

Query: 284 SFRELLLWMVED 295
            +R+L+  ++ +
Sbjct: 304 LYRDLVQAVIAE 315


>gi|239618027|ref|YP_002941349.1| D-alanine/D-alanine ligase [Kosmotoga olearia TBF 19.5.1]
 gi|239506858|gb|ACR80345.1| D-alanine/D-alanine ligase [Kosmotoga olearia TBF 19.5.1]
          Length = 305

 Score =  146 bits (369), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 101/302 (33%), Positives = 157/302 (51%), Gaps = 14/302 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK-PDLAFNVLH 59
           + VL GG+S ER +SL SG    +ALE  G+ V   D+       LA L+  DL F  LH
Sbjct: 8   ITVLYGGLSKERPISLKSGSNVINALEKLGYIVDAFDLRADNITELAKLRDTDLVFIALH 67

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC-GVPVCPSILVNRFTM 118
           G FGEDG +Q++LEL  I Y  S  L SA+  +K  + +++S+   +P   +I       
Sbjct: 68  GKFGEDGKIQSLLELFGIEYIGSDSLVSAICFNKNLTYKLLSNTITMPRWKTITSEEELE 127

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
             +H    P VIKP   GSS+G+ +   D    L    +        L++E+Y+ G ELT
Sbjct: 128 GWKHF---PAVIKPANEGSSIGVYIC--DTFEELQNKTTKVLKEYKTLILEEYIKGRELT 182

Query: 179 CGVMGDAS----LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
             ++        L + E+  PK  FY YE KY++  +  ++PA I   + +E+++L+   
Sbjct: 183 ISIIEKGGQPVVLPILELK-PKRRFYDYEAKYTAGLTEFIVPAPIDDKLKEEIKKLSKRI 241

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             A+GCR  +R D +      + ++LE+N  PG+T +S  P  A  AG  F EL+  +V+
Sbjct: 242 FTALGCRHFARIDGILK--ENQFYFLEVNTIPGLTDLSDLPVSARAAGMGFEELIDLIVK 299

Query: 295 DA 296
           +A
Sbjct: 300 EA 301


>gi|254967029|gb|ACT97550.1| putative D-alanine-D-alanine ligase [uncultured organism]
          Length = 348

 Score =  146 bits (369), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 106/345 (30%), Positives = 164/345 (47%), Gaps = 50/345 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------------------- 38
           +AVL GG SSER+VSLS+G   A AL + G  V  +D                       
Sbjct: 3   IAVLCGGRSSERDVSLSTGIQVARALRETGHDVVLVDACVDFPLDCRPEEVFEKALPIEN 62

Query: 39  --------------DRSVGL----VLAHLK-PDLAFNVLHGNFGEDGLVQAILELLEIPY 79
                         DR+ G     VL   K  D+ FN LHG+ GE+G +QA+ +LL I Y
Sbjct: 63  HAIGAAAPCVERFFDRASGFFGKNVLEICKSADIVFNALHGDEGENGKLQAVFDLLNICY 122

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR----FTMDSQHLISPPYVIKPLKG 135
           T SG     L+M+K  SKQ+  + G+P   +++++        +    +  P V+KP   
Sbjct: 123 TGSGAQGCMLAMNKSLSKQLFRTHGIPTPEAVILSESDKCRAAELCEKLGLPCVVKPASL 182

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195
           GSS+G+ +++        L  + S  H   +++E+Y+ G E   G++G   L   EI +P
Sbjct: 183 GSSVGVSIVRTIDEFFTALDSAFSLEH--TVIVEKYIKGREFAVGIVGSRVLPAIEI-IP 239

Query: 196 KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255
           K  FY Y+ KY    +  + PA I  D  + +        + +G    +R+DF+ D    
Sbjct: 240 KHGFYDYKNKYQPGCTVEICPADIDSDTAERMAEATRKVFRVLGLGAYARADFMVD--EN 297

Query: 256 KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
            ++ LE N  PGMTPVS+ P+ AA     F  LL  +++++  LR
Sbjct: 298 GIYCLEANTLPGMTPVSLLPQEAAADKLDFPALLEAIIKESLLLR 342


>gi|225620780|ref|YP_002722038.1| D-alanine--D-alanine ligase [Brachyspira hyodysenteriae WA1]
 gi|225215600|gb|ACN84334.1| D-alanine--D-alanine ligase [Brachyspira hyodysenteriae WA1]
          Length = 328

 Score =  146 bits (369), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 101/309 (32%), Positives = 159/309 (51%), Gaps = 20/309 (6%)

Query: 1   MAVLMGGISSEREVSLSSGKACASAL---EDAGFKVSQIDVDRSVGLV--LAHLKPDLAF 55
           +AVL GG+SSEREVSL SG+    AL   ++       IDV  S  LV  L     +  +
Sbjct: 20  IAVLHGGLSSEREVSLRSGQNVYKALTSFDEIKDNCILIDVKDSYELVKKLKENNIEYCY 79

Query: 56  NVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL--- 112
           N+LHG  GEDG VQ +LE L I YT   IL SA+ M+K+ +K++  S  V     +L   
Sbjct: 80  NILHGTSGEDGTVQGLLESLNIKYTGENILVSAVCMNKVYTKRIWKSSNVSTADFMLLKD 139

Query: 113 ---VNRFTMDSQHL-ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168
              +N   +    L  + P ++KP+  GSS+G+ +IK        +   SS    +   +
Sbjct: 140 VKEINDSGIKGSALTFNFPLILKPISDGSSVGVHLIKTKTEFESVV---SSIKDSENYFL 196

Query: 169 EQYVDGIELTCGVMGDASLDVTEIAV----PKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           E Y+ G E+T G++     ++    +     K++ Y YE KY+   +   +PAK+  +I 
Sbjct: 197 EPYIKGKEITVGLVKQDDENIYVFPILGINSKNEIYDYEAKYTPGKTEMEMPAKLSKEIE 256

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
            +V      A++ +GC G+SR D +      +V+ +E+N Q GMT  S  P MA +    
Sbjct: 257 NKVIETCKKAYKVLGCSGLSRIDAIVGN-DNEVYLMEVNTQGGMTNTSDIPAMAKHINLD 315

Query: 285 FRELLLWMV 293
           F +L+L+++
Sbjct: 316 FNDLVLYIL 324


>gi|23464945|ref|NP_695548.1| D-alanyl-alanine synthetase A [Bifidobacterium longum NCC2705]
 gi|39930901|sp|Q8G7C4|DDL_BIFLO RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|23325541|gb|AAN24184.1| D-alanine--D-alanine ligase [Bifidobacterium longum NCC2705]
          Length = 428

 Score =  146 bits (369), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 92/292 (31%), Positives = 153/292 (52%), Gaps = 26/292 (8%)

Query: 28  DAGFKVSQIDV-DRSVGLVLAHLKP-DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
           D+GF  S + + D  +  VL  L   D    VLHG +GEDG VQ +LE++ +PY   G+ 
Sbjct: 134 DSGFGTSFVSMSDPEMHHVLTSLGHVDAVLPVLHGPYGEDGTVQGLLEMMGVPYVGCGVF 193

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP--------PYVIKPLKGGS 137
           ASA  MDK  +K V+ + G+P  P + V+     +  +++         P  +KP + GS
Sbjct: 194 ASAACMDKHYTKVVLDAAGIPTAPGVTVDARNFTAADVLAEIEDAGLTYPLFVKPSRAGS 253

Query: 138 SLGIIVIKK--DQSIPLDLLQ---SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192
           S G+  ++K  D+    D L    +++  H  ++L+EQ +DG E+ C V+   + D  E 
Sbjct: 254 SFGVTKVEKADDRETQQDRLAAAIATAGEHDWKVLVEQGIDGREIECAVLCPKAGDEPEA 313

Query: 193 AVP---------KSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
           + P            FY ++ KY   +++HV +PA +P+ + ++V+ +A  A +A+   G
Sbjct: 314 SWPGEIVLDHQNDDQFYDFDSKYMDASASHVEVPANLPVSVLEDVRDVARRAFKAVDGAG 373

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           +SR D    P    V   EIN  PG TP+S++P+     G S+ EL+  ++E
Sbjct: 374 LSRVDTFVTP-DGTVMVNEINTMPGFTPISMYPKAWDATGVSYTELITRLIE 424


>gi|298208167|ref|YP_003716346.1| D-alanylalanine synthetase [Croceibacter atlanticus HTCC2559]
 gi|83848088|gb|EAP85958.1| D-alanylalanine synthetase [Croceibacter atlanticus HTCC2559]
          Length = 324

 Score =  146 bits (368), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 95/317 (29%), Positives = 169/317 (53%), Gaps = 34/317 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------DRSVGLVLAH--- 48
           +A+ MGG SSE ++SL+SG      ++   +   ++ +         D +   V+     
Sbjct: 5   VAIAMGGYSSEFQISLNSGNVVYKHIDLEKYTPYRVHILKEEWLAFDDENHSYVINKNDF 64

Query: 49  --------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
                   ++ D+ FN++HG  GEDG +QA LELL IP T     ++AL+ +K  +  V+
Sbjct: 65  SFIKQGKTIRFDVVFNIIHGTPGEDGKLQAYLELLNIPQTACDFYSAALTFNKRDTISVL 124

Query: 101 SSCGVPVCPSILVNRF-TMDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
              G+    ++ +N+  T++   +IS    P  +K  K GSS GI  +   +  P  L  
Sbjct: 125 KPYGIKTATNVFINKGDTVNVNQIISKVGLPCFVKANKAGSSFGISKVYNAEEFPKAL-- 182

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGD----ASLDVTEIAVPKSDFYSYELKYSSLNST 212
             ++   D++L+E ++DG E++ GV+       +L +TEI V ++DF+ YE KY+   S 
Sbjct: 183 DVAFKEDDEVLVESFLDGTEVSVGVITYNTTITALPITEI-VSENDFFDYEAKYNG-QSQ 240

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
            + PA+I      EVQ++A   ++ +  +G++R++F+F   + +  +LE+N  PG++  S
Sbjct: 241 EITPARISDAQRDEVQQIAIKIYKTLKLKGLTRAEFIFH--NNEPHFLEVNTCPGLSEAS 298

Query: 273 IFPEMAAYAGYSFRELL 289
           I P+ AA AG S ++L 
Sbjct: 299 IIPQQAAEAGISLKDLF 315


>gi|315502030|ref|YP_004080917.1| d-alanine/d-alanine ligase [Micromonospora sp. L5]
 gi|315408649|gb|ADU06766.1| D-alanine/D-alanine ligase [Micromonospora sp. L5]
          Length = 377

 Score =  146 bits (368), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 99/349 (28%), Positives = 165/349 (47%), Gaps = 62/349 (17%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           + V+ GG S+E EVS +S    A AL + G +V  + + R+ G+ L              
Sbjct: 7   IGVVFGGPSAEHEVSCASALGVARALAEQGHRVVALGITRTGGIRLLPEPVLAQHLGTVT 66

Query: 47  -------------------------------------AHLKPDLAFNVLHGNFGEDGLVQ 69
                                                 H + D+ F VLHG +GEDG+VQ
Sbjct: 67  AGRAIDDRLPVTGPAVELRRGTTTGTVAVGAADAPATVHAELDVVFPVLHGPYGEDGVVQ 126

Query: 70  AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN----RFTMDSQHLI- 124
            +LE L +PY   GILASA+ MDK+  K+ + +  VP  P +  +    R   D + L+ 
Sbjct: 127 GLLESLGVPYVGCGILASAVGMDKVAMKRALRAEDVPTTPYVWFDEPTWRAASDPEKLVV 186

Query: 125 --SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
               P  +KP + GSS+GI  +    +  L      ++ H   +L+EQ V G EL CGV+
Sbjct: 187 GLRGPLFVKPARMGSSIGISRVADGDN--LIAAVEEAFRHDHVVLVEQGVTGRELECGVL 244

Query: 183 GDASLDVTEIAVPK--SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           G    + + +   +    ++ Y  KY       ++PA +P ++ + ++ L+  A  AIG 
Sbjct: 245 GGWQPEASAVGEVRVAGGWFDYRQKYFGDADPMIVPAPLPDEVTERIRELSVRAFTAIGG 304

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
            G++R DFL+D  +  +F  E+N  PG T  S++P++ A +G ++ +++
Sbjct: 305 WGLARVDFLYDETTSDLFVNELNTLPGFTAHSMYPKVWAESGVAYPDVV 353


>gi|119505118|ref|ZP_01627194.1| D-alanine-D-alanine ligase and related ATP-grasp enzyme [marine
           gamma proteobacterium HTCC2080]
 gi|119459100|gb|EAW40199.1| D-alanine-D-alanine ligase and related ATP-grasp enzyme [marine
           gamma proteobacterium HTCC2080]
          Length = 309

 Score =  146 bits (368), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 103/284 (36%), Positives = 152/284 (53%), Gaps = 11/284 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP-DLAFNVLH 59
            AVLMGG ++ERE+SL SG+  AS LE AG  V++ID   +V      L   D  FN+LH
Sbjct: 11  FAVLMGGAAAEREISLQSGENVASVLEAAGCPVTRID--PAVEQWADQLSDIDFVFNLLH 68

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G  GEDG++Q + +++ +PY+ SG+L SAL+MDK R+KQ+ S  G+P  P   +     D
Sbjct: 69  GPGGEDGVLQGLFDVMNLPYSGSGVLGSALTMDKARTKQLWSGMGLPT-PDFTLLTADTD 127

Query: 120 SQHLISP--PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
              LI       +KP   GSS+G+      + +     ++ ++  G  ++ E +V G E 
Sbjct: 128 WSDLIERHGTLFVKPALEGSSIGMSKASTPEQLEAAWKRARAYKGG--IIAECFVAGEEY 185

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           T  ++GD +L    I  P S+FY ++ KY S N+    P+ +      E+  LA  A  A
Sbjct: 186 TVSILGDRALPAIRIE-PASEFYDFDAKYVSDNTGFFCPSGLTASDEAELSALALRAFYA 244

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYA 281
           +      R D + D +S     LE+N  PGMT  S+ P MAA A
Sbjct: 245 VDAAVWGRVDVMRD-ISGAWQLLEVNTIPGMTSHSLVP-MAARA 286


>gi|291517448|emb|CBK71064.1| D-alanine--D-alanine ligase [Bifidobacterium longum subsp. longum
           F8]
          Length = 395

 Score =  146 bits (368), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 92/292 (31%), Positives = 153/292 (52%), Gaps = 26/292 (8%)

Query: 28  DAGFKVSQIDV-DRSVGLVLAHLKP-DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
           D+GF  S + + D  +  VL  L   D    VLHG +GEDG VQ +LE++ +PY   G+ 
Sbjct: 101 DSGFGTSFVSMSDPEMHHVLTSLGHVDAVLPVLHGPYGEDGTVQGLLEMMGVPYAGCGVF 160

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP--------PYVIKPLKGGS 137
           ASA  MDK  +K V+ + G+P  P + V+     +  +++         P  +KP + GS
Sbjct: 161 ASAACMDKHYTKVVLDAAGIPTAPGVTVDARNFTAADVLAEIEDAGLTYPLFVKPSRAGS 220

Query: 138 SLGIIVIKK--DQSIPLDLLQ---SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192
           S G+  ++K  D+    D L    +++  H  ++L+EQ +DG E+ C V+   + D  E 
Sbjct: 221 SFGVTKVEKADDRETQQDRLAAAIATAGEHDWKVLVEQGIDGREIECAVLCPKAGDEPEA 280

Query: 193 AVP---------KSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
           + P            FY ++ KY   +++HV +PA +P+ + ++V+ +A  A +A+   G
Sbjct: 281 SWPGEIVLDHQNDDQFYDFDSKYMDASASHVEVPANLPVSVLEDVRDVARRAFKAVDGAG 340

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           +SR D    P    V   EIN  PG TP+S++P+     G S+ EL+  ++E
Sbjct: 341 LSRVDTFVTP-DGTVMVNEINTMPGFTPISMYPKAWDATGVSYTELITRLIE 391


>gi|227545759|ref|ZP_03975808.1| D-alanine--D-alanine ligase [Bifidobacterium longum subsp. infantis
           ATCC 55813]
 gi|227213875|gb|EEI81714.1| D-alanine--D-alanine ligase [Bifidobacterium longum subsp. infantis
           ATCC 55813]
          Length = 397

 Score =  146 bits (368), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 92/292 (31%), Positives = 153/292 (52%), Gaps = 26/292 (8%)

Query: 28  DAGFKVSQIDV-DRSVGLVLAHLKP-DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
           D+GF  S + + D  +  VL  L   D    VLHG +GEDG VQ +LE++ +PY   G+ 
Sbjct: 103 DSGFGTSFVSMSDPEMHHVLTSLGHVDAVLPVLHGPYGEDGTVQGLLEMMGVPYVGCGVF 162

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP--------PYVIKPLKGGS 137
           ASA  MDK  +K V+ + G+P  P + V+     +  +++         P  +KP + GS
Sbjct: 163 ASAACMDKHYTKVVLDAAGIPTAPGVTVDARNFTAADVLAEIEDAGLTYPLFVKPSRAGS 222

Query: 138 SLGIIVIKK--DQSIPLDLLQ---SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192
           S G+  ++K  D+    D L    +++  H  ++L+EQ +DG E+ C V+   + D  E 
Sbjct: 223 SFGVTKVEKADDRETQQDRLAAAIATAGEHDWKVLVEQGIDGREIECAVLCPKAGDEPEA 282

Query: 193 AVP---------KSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
           + P            FY ++ KY   +++HV +PA +P+ + ++V+ +A  A +A+   G
Sbjct: 283 SWPGEIVLDHQNDDQFYDFDSKYMDASASHVEVPANLPVSVLEDVRDVARRAFKAVDGAG 342

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           +SR D    P    V   EIN  PG TP+S++P+     G S+ EL+  ++E
Sbjct: 343 LSRVDTFVTP-DGTVMVNEINTMPGFTPISMYPKAWDATGVSYTELITRLIE 393


>gi|213691237|ref|YP_002321823.1| D-alanine--D-alanine ligase [Bifidobacterium longum subsp. infantis
           ATCC 15697]
 gi|259645163|sp|B7GU04|DDL_BIFLI RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|213522698|gb|ACJ51445.1| D-alanine--D-alanine ligase [Bifidobacterium longum subsp. infantis
           ATCC 15697]
 gi|320457299|dbj|BAJ67920.1| D-alanine-D-alanine ligase [Bifidobacterium longum subsp. infantis
           ATCC 15697]
          Length = 395

 Score =  146 bits (368), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 87/272 (31%), Positives = 144/272 (52%), Gaps = 26/272 (9%)

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV 105
           L H+  D    VLHG +GEDG VQ +LE++ +PY   G+ ASA  MDK  +K V+ + G+
Sbjct: 123 LGHV--DAVLPVLHGPYGEDGTVQGLLEMMGVPYVGCGVFASAACMDKHYTKVVLGAAGI 180

Query: 106 PVCPSILVNRFTMDSQHLISP--------PYVIKPLKGGSSLGIIVIKK--DQSIPLDLL 155
           P  P + V+     +  +++         P  IKP + GSS G+  ++K  D+    D L
Sbjct: 181 PTAPGVTVDARNFTAADVLAKIEDAGLTYPLFIKPSRAGSSFGVTKVEKADDRETQQDRL 240

Query: 156 Q---SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP---------KSDFYSYE 203
               +++  H  ++L+EQ +DG E+ C V+   + D  E + P            FY ++
Sbjct: 241 AAAIATAGEHDWKVLVEQGIDGREIECAVLCPKAGDEPEASWPGEIVLDHQNDDQFYDFD 300

Query: 204 LKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
            KY   +++HV +PA +P+ + ++V+ +A  A +A+   G+SR D    P    V   EI
Sbjct: 301 SKYMDASASHVEVPANLPVSVLEDVRDVARRAFKAVDGAGLSRVDTFVTP-DGTVMVNEI 359

Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           N  PG TP+S++P+     G S+ EL+  ++E
Sbjct: 360 NTMPGFTPISMYPKAWDATGVSYTELITRLIE 391


>gi|118594415|ref|ZP_01551762.1| D-alanylalanine synthetase [Methylophilales bacterium HTCC2181]
 gi|118440193|gb|EAV46820.1| D-alanylalanine synthetase [Methylophilales bacterium HTCC2181]
          Length = 302

 Score =  146 bits (368), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 99/299 (33%), Positives = 157/299 (52%), Gaps = 10/299 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+ERE+SL SG+A  ++L  +  KV+   +D     +    +    F  LHG
Sbjct: 9   VAVLLGGESNEREISLQSGQAVLTSLLQS--KVNAFGLDPKFEPLSKLAECSRVFICLHG 66

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q+ L+ ++IPYT SG  AS L MDK+ SK +     +   P+ +     M  
Sbjct: 67  KDGEDGKIQSYLDDIKIPYTGSGFHASKLGMDKLLSKNIWKKLKINT-PNFVRLEEGMTY 125

Query: 121 QHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
             +   +   + IK    GSS+GI  + K Q         S++   + ++ E  + G E 
Sbjct: 126 DEVCKNLGSSFFIKAANSGSSIGISKVTKPQQYQAAF--ESAYKVDNTVIAEMMIFGEEF 183

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           T  ++  + L + EI  PK+DFY YE KY   ++  + PAK+   +  ++ +L   A  A
Sbjct: 184 TLPILDSSPLSIVEIR-PKTDFYDYEAKYHRDDTEFICPAKLDKVLVDKINQLGMKAFNA 242

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +GC G  R DF+ +    +VF +E+N  PGMT  S+ P  A  +G SF  L+L +++ A
Sbjct: 243 LGCSGWGRVDFMINN-QNEVFIIEVNTIPGMTSHSLVPMSAKQSGLSFDSLVLKVLDTA 300


>gi|75906585|ref|YP_320881.1| D-alanyl-alanine synthetase A [Anabaena variabilis ATCC 29413]
 gi|123610777|sp|Q3MGA0|DDL_ANAVT RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|75700310|gb|ABA19986.1| D-alanine--D-alanine ligase [Anabaena variabilis ATCC 29413]
          Length = 367

 Score =  146 bits (368), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 109/356 (30%), Positives = 169/356 (47%), Gaps = 66/356 (18%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV----DRSVGLVLAHLKP----- 51
           + +L GG S E EVS+SS +A ASAL  AG   S+ ++        G  LA   P     
Sbjct: 6   VGLLFGGRSGEHEVSISSARAIASAL-SAGENASKYEILPFYIHKDGRWLAGEAPQQVLK 64

Query: 52  --------------------------------------DLAFNVLHGNFGEDGLVQAILE 73
                                                 D+ F +LHG  GEDG +Q +L 
Sbjct: 65  SGAPLLESSNSSPADNNLVNSQQQTLERWQSPSQVAEVDVWFPILHGPNGEDGTIQGLLT 124

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP------- 126
           L++ P+  SG+L SAL MDK+  K      G+P      V R  + S   + P       
Sbjct: 125 LMQTPFVGSGVLGSALGMDKIAMKMAFEQAGLPQVKYKAVTRAQIWSNPCVFPKLCDEIE 184

Query: 127 -----PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
                P  +KP   GSS+GI  ++  Q +  D L +++ N+  ++++E  V   E+ C V
Sbjct: 185 ASLGYPCFVKPANLGSSVGISKVRSRQELE-DALDNAA-NYDRRIIVEAGVVAREVECAV 242

Query: 182 MGD---ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           +G+    +  V EI    SDFY YE KY++  +  ++PA IP +I +++Q +A  A  A+
Sbjct: 243 LGNDQPQASTVGEITF-NSDFYDYETKYTAGKADLLIPAVIPDEISRQIQDMALQAFAAV 301

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
              G++R DF +   + +V   EIN  PG T  S++P++ AY+G  F EL+  +V+
Sbjct: 302 DAAGLARVDFFYVEATGEVLINEINTLPGFTATSMYPQLWAYSGIPFPELVDKLVQ 357


>gi|37544103|gb|AAQ93036.1| D-alanine-D-alanine ligase B [Rhizobium etli]
          Length = 136

 Score =  146 bits (368), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 71/105 (67%), Positives = 84/105 (80%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSER VSLSSGKACA ALE  GFKV+ +DV R V   LA LKPD+ FN LHG
Sbjct: 32  VAVLMGGFSSERPVSLSSGKACAEALEAEGFKVTTLDVARDVSEKLAALKPDVVFNALHG 91

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV 105
            FGEDG +Q ILE LEIPYTHSG+LASAL+MDK ++K+V ++ G+
Sbjct: 92  PFGEDGTIQGILEYLEIPYTHSGVLASALAMDKGKAKRVAAAAGI 136


>gi|169334858|ref|ZP_02862051.1| hypothetical protein ANASTE_01264 [Anaerofustis stercorihominis DSM
           17244]
 gi|169257596|gb|EDS71562.1| hypothetical protein ANASTE_01264 [Anaerofustis stercorihominis DSM
           17244]
          Length = 351

 Score =  146 bits (368), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 97/292 (33%), Positives = 155/292 (53%), Gaps = 16/292 (5%)

Query: 6   GGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGED 65
           G I   R  +    K C  AL         I V ++  L++ H+  D AF +LHG  GED
Sbjct: 60  GDIEKIRNDTWHLDKNCYDALISGNTSEHGIVVFKNDELIIIHI--DAAFPILHGKNGED 117

Query: 66  GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD-SQHL- 123
           G +Q +LEL  IP    G+L+SAL MDK R+ ++V S G+ V  S+L+N+   D S H+ 
Sbjct: 118 GTIQGLLELGGIPIIGCGVLSSALCMDKYRAHKLVESMGIKVPKSVLINKSINDFSNHIE 177

Query: 124 -ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS--SSWNHGDQLLIEQYVDGIELTCG 180
            +  P  +KPLK GSS GI  ++  +    DL ++   ++ + D++++E+ +DG E+ C 
Sbjct: 178 YLGFPIFVKPLKAGSSFGITKVEDKK----DLFKAVDKAFEYDDKVVLEENIDGFEVGCA 233

Query: 181 VMGDAS---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           V+G+      +V EI + K  F+ Y  KY+   S   +PA+I  +  K ++  A   ++ 
Sbjct: 234 VLGNEKPIIGEVDEIELSKG-FFDYVEKYNLKTSKIHMPARITEENAKVIKETALKIYKI 292

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           + C+  +R D +F    R + + E+N  PG T  S FP M    G  F E++
Sbjct: 293 LDCKDFARID-MFITKDRDIVFNEVNTIPGFTAHSRFPNMLKGIGMDFDEIV 343


>gi|229017909|ref|ZP_04174789.1| D-alanine--D-alanine ligase [Bacillus cereus AH1273]
 gi|229024130|ref|ZP_04180599.1| D-alanine--D-alanine ligase [Bacillus cereus AH1272]
 gi|228737163|gb|EEL87689.1| D-alanine--D-alanine ligase [Bacillus cereus AH1272]
 gi|228743385|gb|EEL93505.1| D-alanine--D-alanine ligase [Bacillus cereus AH1273]
          Length = 304

 Score =  146 bits (368), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 90/305 (29%), Positives = 170/305 (55%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGG+SSE++VS+ +G    + L+ + +++  I ++  + L+      D A   LHG
Sbjct: 3   IGVIMGGVSSEKQVSIMTGNEMITHLDKSKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---FT 117
            +GEDG VQ  LE L IPY+ S +L+S + MDK  SK+++   GV     I + +     
Sbjct: 63  KYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNISKKILRYEGVETPDWIELTKMEDLK 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS-SWNHGDQLLIEQYVDGIE 176
           ++    I  P V+KP  GGSS+G+ ++  D++  + +L++   W+   +++IE+Y+ G E
Sbjct: 123 LEELDKIGFPLVVKPNSGGSSVGVKIV-NDKNELISMLETVFEWDS--EVVIEKYIKGDE 179

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +TC +     L +  I    ++F+ Y  KY  +++   +  ++P +I + V + +   ++
Sbjct: 180 ITCSIFDGKQLPIISIR-HAAEFFDYNAKYDDVSTIEEV-IELPAEIKERVNKASIACYK 237

Query: 237 AIGCRGISRSDFLF-DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           A+ C   +R D +  D +    + +E+N  PGMT  S+ P+ A  AG ++ +LL  ++E 
Sbjct: 238 ALKCSVYARVDMMVKDGIP---YVMEVNTLPGMTQSSLLPKSADAAGINYSKLLDMIIET 294

Query: 296 ASCLR 300
           +  +R
Sbjct: 295 SLKVR 299


>gi|332982128|ref|YP_004463569.1| D-alanine--D-alanine ligase [Mahella australiensis 50-1 BON]
 gi|332699806|gb|AEE96747.1| D-alanine--D-alanine ligase [Mahella australiensis 50-1 BON]
          Length = 360

 Score =  146 bits (368), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 87/271 (32%), Positives = 148/271 (54%), Gaps = 18/271 (6%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           ID+ R    +      D  F VLHG  GEDG VQ +LEL +IPY   G+LAS+L+MDK+ 
Sbjct: 83  IDIKRDCTFIPV----DAVFPVLHGPHGEDGTVQGLLELADIPYVGCGVLASSLAMDKVL 138

Query: 96  SKQVVSSCGVPVC--PSILVNRFTMDSQHLISP-------PYVIKPLKGGSSLGIIVIKK 146
           SK+V    G+ V    S +   F +  +  +S        P  +KP   GSS+GI     
Sbjct: 139 SKEVFLRHGLRVAEYTSTIYEHFKVTPKVFVSVAETKLGYPCFVKPANMGSSVGITKAHN 198

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA--VPKSDFYSYEL 204
              +   +  +  ++   ++L+E+++DG E+ C V+G+   + + +   VP ++FY Y  
Sbjct: 199 RDELMEAIELAGKYDR--KILVEEFIDGHEIECAVLGNDYPEASTVGQIVPCNEFYDYNA 256

Query: 205 KY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
           KY     S  V+PA +P+D+ +EV+R+A  A++A+ C G++R DFL       ++  E+N
Sbjct: 257 KYFDEGKSGLVIPADLPIDVMEEVRRMAVEAYRALDCAGMARVDFLVKKSDNTIYLNEVN 316

Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             PG T +S++P++   +   + +L+  ++E
Sbjct: 317 TIPGFTKISMYPKLWDASSLPYDKLIDRLIE 347


>gi|218289167|ref|ZP_03493403.1| D-alanine/D-alanine ligase [Alicyclobacillus acidocaldarius LAA1]
 gi|218240750|gb|EED07929.1| D-alanine/D-alanine ligase [Alicyclobacillus acidocaldarius LAA1]
          Length = 383

 Score =  146 bits (368), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 86/254 (33%), Positives = 139/254 (54%), Gaps = 13/254 (5%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+ F VLHG FGEDG +Q +LE++ IPY  SG+LASAL MDK+  KQ+ S+ G+P    +
Sbjct: 113 DVVFPVLHGTFGEDGTIQGLLEMVGIPYVGSGVLASALGMDKIAMKQIFSAVGIPQARWV 172

Query: 112 LVNR--FTMDSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
              R  +T D   ++         P  +KP   GSS+GI   +  + +   +  + S++ 
Sbjct: 173 GFTRASWTQDDGRIVREIEEQLGYPCFVKPANLGSSVGISKARNQRELVESVHLALSYDR 232

Query: 163 GDQLLIEQYVDGIELTCGVMG--DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
             ++++E+ +D  E+  G++G  D    V    VPK +FY YE KY    +   +PA + 
Sbjct: 233 --RVIVEEAIDAREIEIGILGNDDPIASVAGEIVPKREFYDYEAKYQDGGAELRIPADLS 290

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280
            +  K V+  A  A QAI   G++R DF  +  + +V   EIN  PG T  S++P++   
Sbjct: 291 PEERKAVESYAIRAFQAIDGSGLARVDFFVERGTGRVLVNEINTMPGFTRFSMYPKLWEA 350

Query: 281 AGYSFRELLLWMVE 294
           +G ++ +LL  ++E
Sbjct: 351 SGLAYDKLLDRLIE 364


>gi|229822689|ref|YP_002884215.1| D-alanine--D-alanine ligase [Beutenbergia cavernae DSM 12333]
 gi|229568602|gb|ACQ82453.1| D-alanine--D-alanine ligase [Beutenbergia cavernae DSM 12333]
          Length = 313

 Score =  146 bits (368), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 99/300 (33%), Positives = 160/300 (53%), Gaps = 18/300 (6%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62
           VL GG+S ER+VSL SG+  A AL DAG   +  DVD  +   L   +PD+ + +LHG+ 
Sbjct: 7   VLAGGLSHERDVSLRSGRRVAEALRDAGVSAAVRDVDADLLAYLDDARPDVVWPLLHGST 66

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV--PVCPSILVNRFTMDS 120
           GEDG ++ +LEL+ +    +G   S ++  K  +K V++  GV  P   ++  + F    
Sbjct: 67  GEDGSIRDLLELVGVRAVGTGSAGSRIAWAKPVAKTVLARAGVATPASATLPQSLFRELG 126

Query: 121 QHLI--------SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
            H +          P V+KP  GGS+LG+ ++   +++P  ++  S +++GD  LIEQ V
Sbjct: 127 PHAVLGRVLDRLGLPLVVKPASGGSALGVSLVTSAEALPQAMV--SCFSYGDVALIEQAV 184

Query: 173 DGIELTCGV--MGDASLDVTEIAVPKSDF-YSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
            G E+   V  +GD  + +  + +   D  Y ++ +Y++  + +  PA++P D       
Sbjct: 185 TGTEVAVSVVDLGDGPVALPPVEIVVDDGPYDFDARYNAGRTEYFTPARLPADHLAAACA 244

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           +A  AH  +  R +SR+D + D     V W LE+NV PGMT  S+FP  AA +     EL
Sbjct: 245 VAVRAHDVLRLRHLSRTDLVVD--GYGVAWFLEVNVAPGMTETSLFPLAAAASPTPLPEL 302


>gi|158319344|ref|YP_001511851.1| D-alanine--D-alanine ligase [Alkaliphilus oremlandii OhILAs]
 gi|158139543|gb|ABW17855.1| D-alanine--D-alanine ligase [Alkaliphilus oremlandii OhILAs]
          Length = 368

 Score =  146 bits (368), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 80/258 (31%), Positives = 145/258 (56%), Gaps = 17/258 (6%)

Query: 50  KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109
           K D+ F VLHG FGEDG +Q + E++ IPY  +G+LAS+L+MDK  SK++    G+P   
Sbjct: 102 KIDVVFPVLHGPFGEDGTIQGLFEMMNIPYVGTGVLASSLAMDKAMSKKLFELEGIPQAK 161

Query: 110 --SILVNRFTMDSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160
             + LV  +  + + ++         P  +KP   GSS+GI  +   + +   +  ++ +
Sbjct: 162 YHAFLVKEYKENEKEVLDTIEEKFTYPVFVKPANMGSSVGITKVHNREKLEKAIELAAKY 221

Query: 161 NHGDQLLIEQYVDGIELTCGVMGD----ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216
           +   ++++E+ ++G E+ C V+G+    ASL   EI +P ++FY Y  KY +  S   +P
Sbjct: 222 DR--KIVVEEGINGREIECSVLGNDEPIASLP-AEI-IPSAEFYDYNDKYFAGTSKFEIP 277

Query: 217 AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPE 276
           A +P D+ + ++ L+   ++ + C G+SR D   +  S ++   E+N  PG T +S++P+
Sbjct: 278 ANLPEDVIEGIRSLSVKVYKLLDCSGLSRVDCFIERDSNRILLNEVNTMPGFTQISMYPK 337

Query: 277 MAAYAGYSFRELLLWMVE 294
           M    G  + EL+  ++E
Sbjct: 338 MWEATGIEYEELIDRLIE 355


>gi|289423749|ref|ZP_06425544.1| D-alanine--D-alanine ligase B [Peptostreptococcus anaerobius 653-L]
 gi|289155788|gb|EFD04458.1| D-alanine--D-alanine ligase B [Peptostreptococcus anaerobius 653-L]
          Length = 300

 Score =  146 bits (368), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 96/299 (32%), Positives = 147/299 (49%), Gaps = 7/299 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG+SSEREVSL+SGKA    L+   + V    +D    +       DLA   LHG
Sbjct: 4   IAVLYGGVSSEREVSLNSGKAMIDNLDKNKYDVIDFRIDSKDDIFKLDKDIDLALIGLHG 63

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL---VNRFT 117
            FGEDG +QA+LE + I Y+    L S + MDK  +K +    GV      +   V+   
Sbjct: 64  KFGEDGSIQAVLETMGINYSGCNPLTSGILMDKNFTKIIARENGVKTANWAIVKSVDAID 123

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            D    I  P  IKP  GGSS+   ++K    +   +++  ++ + D ++IE+Y+ GIE 
Sbjct: 124 YDKIDEIGYPVFIKPNSGGSSVATNLVKSKDQVESAVIE--AFKYDDIVMIEEYIKGIEH 181

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           T  ++         I     +F+ YE KYS+ N       ++   + K ++  +      
Sbjct: 182 TSFILNGEVFPTIRI-TSDHEFFDYEAKYSTSNGAREEVVELEESVAKTLEDTSRTCWDI 240

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             CRG  R+D++      +V+ LEIN  PGMT  S+ P+ A   G  +  LL  ++E A
Sbjct: 241 YNCRGYVRADYIITE-DNQVYLLEINTLPGMTETSLIPKSAKARGIDYSGLLDKLIESA 298


>gi|228998192|ref|ZP_04157790.1| D-alanine--D-alanine ligase [Bacillus mycoides Rock3-17]
 gi|228761584|gb|EEM10532.1| D-alanine--D-alanine ligase [Bacillus mycoides Rock3-17]
          Length = 304

 Score =  146 bits (368), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 91/303 (30%), Positives = 161/303 (53%), Gaps = 9/303 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGG+SSE++VSL +G+   + L+ + ++V  I ++    LV      D+A   LHG
Sbjct: 3   VGVIMGGVSSEKQVSLMTGEEMIAHLDKSKYEVVPIKLNDKKELVEKVRNLDIALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN---RFT 117
            +GEDG +Q  LE L +PYT S +L+S + MDK  SK+++    +     I ++      
Sbjct: 63  EYGEDGTIQGTLETLGVPYTGSVMLSSGICMDKNMSKKMIRYEDIQTPDWIHLSNTEELQ 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
           +D    +  P V+KP  GGSS+G+ ++    S+   L     W+   +++IE+Y+ G E+
Sbjct: 123 LDEIDKMGYPLVVKPNSGGSSVGVKIVYDKDSLLSSLEDVFKWD--SEIVIEKYIKGEEI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC ++    L +  I    ++F+ Y  KY  + +   +  ++P   Y+ V   A   ++A
Sbjct: 181 TCSILDGKLLPIISIQ-HTAEFFDYHAKYDDIATIEEV-VELPATTYERVAEAAMTCYRA 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           + C   +R D +        + +E+N  PGMT  S+ P+ A  AG S+ +LL  ++E + 
Sbjct: 239 LKCSVYARVDIIIK--DEIPYVMEVNTLPGMTKNSLLPKSAHAAGISYSKLLDMIIETSL 296

Query: 298 CLR 300
            +R
Sbjct: 297 QVR 299


>gi|317481946|ref|ZP_07940971.1| D-alanine-D-alanine ligase [Bifidobacterium sp. 12_1_47BFAA]
 gi|322688440|ref|YP_004208174.1| D-alanine-D-alanine ligase [Bifidobacterium longum subsp. infantis
           157F]
 gi|322690460|ref|YP_004220030.1| D-alanine-D-alanine ligase [Bifidobacterium longum subsp. longum
           JCM 1217]
 gi|316916513|gb|EFV37910.1| D-alanine-D-alanine ligase [Bifidobacterium sp. 12_1_47BFAA]
 gi|320455316|dbj|BAJ65938.1| D-alanine-D-alanine ligase [Bifidobacterium longum subsp. longum
           JCM 1217]
 gi|320459776|dbj|BAJ70396.1| D-alanine-D-alanine ligase [Bifidobacterium longum subsp. infantis
           157F]
          Length = 395

 Score =  146 bits (368), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 92/292 (31%), Positives = 153/292 (52%), Gaps = 26/292 (8%)

Query: 28  DAGFKVSQIDV-DRSVGLVLAHLKP-DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
           D+GF  S + + D  +  VL  L   D    VLHG +GEDG VQ +LE++ +PY   G+ 
Sbjct: 101 DSGFGTSFVSMSDPEMHHVLTSLGHVDAVLPVLHGPYGEDGTVQGLLEMMGVPYVGCGVF 160

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP--------PYVIKPLKGGS 137
           ASA  MDK  +K V+ + G+P  P + V+     +  +++         P  +KP + GS
Sbjct: 161 ASAACMDKHYTKVVLDAAGIPTAPGVTVDARNFTAADVLAEIEDAGLTYPLFVKPSRAGS 220

Query: 138 SLGIIVIKK--DQSIPLDLLQ---SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192
           S G+  ++K  D+    D L    +++  H  ++L+EQ +DG E+ C V+   + D  E 
Sbjct: 221 SFGVTKVEKADDRETQQDRLAAAIATAGEHDWKVLVEQGIDGREIECAVLCPKAGDEPEA 280

Query: 193 AVP---------KSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
           + P            FY ++ KY   +++HV +PA +P+ + ++V+ +A  A +A+   G
Sbjct: 281 SWPGEIVLDHQNDDQFYDFDSKYMDASASHVEVPANLPVSVLEDVRDVARRAFKAVDGAG 340

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           +SR D    P    V   EIN  PG TP+S++P+     G S+ EL+  ++E
Sbjct: 341 LSRVDTFVTP-DGTVMVNEINTMPGFTPISMYPKAWDATGVSYTELITRLIE 391


>gi|237798746|ref|ZP_04587207.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. oryzae str.
           1_6]
 gi|331021599|gb|EGI01656.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. oryzae str.
           1_6]
          Length = 363

 Score =  146 bits (368), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 96/343 (27%), Positives = 176/343 (51%), Gaps = 53/343 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------------------- 40
           +A++ GG SSE EVSL S +   +A++   + ++ I VD+                    
Sbjct: 5   VAIVFGGQSSEHEVSLQSARNVINAIDRERYALTLIGVDKLGRWLRFEEADYLINADDPA 64

Query: 41  -----SVGLVLAHL--------------KP----DLAFNVLHGNFGEDGLVQAILELLEI 77
                + G  L+ L              +P    D+ F ++HG FGEDG +Q +L +L I
Sbjct: 65  RIRLSASGKQLSLLPGRTGGQFVEVETGQPLPAIDVVFPLIHGAFGEDGALQGLLRMLAI 124

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM----DSQHLISPPYVIKPL 133
           P+  + +L+SA  MDK  +K+++   G+ V P +++ R       D+   +  P  +KP 
Sbjct: 125 PFVGADVLSSAACMDKDVTKRLLRDAGIDVAPFLVLTRGQTIDFADAAAQLGLPMFVKPA 184

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD--ASLDVTE 191
             GSS+G+  +  +      L     ++H  +LLIEQ + G E+ C V+G+    + V  
Sbjct: 185 NQGSSVGVSKVSDEAGFAGALALGFEFDH--KLLIEQGIVGREVECAVLGNFEPQVSVCG 242

Query: 192 IAVPKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
             +   +FY+Y+ KY + +   + +PA +P+D+  +V+ +A  A++ +GC G+SR DF F
Sbjct: 243 EVIANDEFYAYDTKYLNGDQARIAIPADMPVDLSDQVRDVALQAYKVLGCAGLSRVDF-F 301

Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
              +R++   E+N  PG T +S++P++   +G ++ EL+  ++
Sbjct: 302 VTEARQIIINEVNTLPGFTSISMYPKLWQASGLTYAELIHRLI 344


>gi|239622538|ref|ZP_04665569.1| D-alanine-D-alanine ligase [Bifidobacterium longum subsp. infantis
           CCUG 52486]
 gi|239514535|gb|EEQ54402.1| D-alanine-D-alanine ligase [Bifidobacterium longum subsp. infantis
           CCUG 52486]
          Length = 395

 Score =  145 bits (367), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 92/292 (31%), Positives = 153/292 (52%), Gaps = 26/292 (8%)

Query: 28  DAGFKVSQIDV-DRSVGLVLAHLKP-DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
           D+GF  S + + D  +  VL  L   D    VLHG +GEDG VQ +LE++ +PY   G+ 
Sbjct: 101 DSGFGTSFVSMSDPEMHHVLTSLGHVDAVLPVLHGPYGEDGTVQGLLEMMGVPYVGCGVF 160

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP--------PYVIKPLKGGS 137
           ASA  MDK  +K V+ + G+P  P + V+     +  +++         P  +KP + GS
Sbjct: 161 ASAACMDKHYTKVVLDAAGIPTAPGVTVDARNFTAADVLAEIEDAGLTYPLFVKPSRAGS 220

Query: 138 SLGIIVIKK--DQSIPLDLLQ---SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192
           S G+  ++K  D+    D L    +++  H  ++L+EQ +DG E+ C V+   + D  E 
Sbjct: 221 SFGVTKVEKADDRETQQDRLAAAIATAGEHDWKVLVEQGIDGHEIECAVLCPKAGDEPEA 280

Query: 193 AVP---------KSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
           + P            FY ++ KY   +++HV +PA +P+ + ++V+ +A  A +A+   G
Sbjct: 281 SWPGEIVLDHQNDDQFYDFDSKYMDASASHVEVPANLPVSVLEDVRDVARRAFKAVDGAG 340

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           +SR D    P    V   EIN  PG TP+S++P+     G S+ EL+  ++E
Sbjct: 341 LSRVDTFVTP-DGTVMVNEINTMPGFTPISMYPKAWDATGVSYTELITRLIE 391


>gi|167760757|ref|ZP_02432884.1| hypothetical protein CLOSCI_03142 [Clostridium scindens ATCC 35704]
 gi|167661644|gb|EDS05774.1| hypothetical protein CLOSCI_03142 [Clostridium scindens ATCC 35704]
          Length = 356

 Score =  145 bits (367), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 107/351 (30%), Positives = 164/351 (46%), Gaps = 55/351 (15%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------DR--------SVGLVL 46
           VL GG+S ER+VSL SG      L + G K   +DV        D+          GL +
Sbjct: 5   VLAGGLSPERDVSLISGAGICRTLREKGHKAYLLDVFFGLPYDPDKLEEVFDLPGGGLEI 64

Query: 47  A-----------------------HLKP---------DLAFNVLHGNFGEDGLVQAILEL 74
           A                       +L P         D+ F  LHG+ GE+G +QA  ++
Sbjct: 65  AEGIKTTTPDLEALRASRPDQSDCYLGPNVIDLCRIADITFMGLHGSVGENGKLQATFDI 124

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---QHLISPPYVIK 131
           L I YT       ALSMDK+ +KQ+    GVP      +NR T D+   +     P VIK
Sbjct: 125 LGIKYTGPNSFGCALSMDKLVAKQIFKRSGVPTPRGTSLNRNTKDTPLEKLGYYLPLVIK 184

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P  GGSS+G+ ++  ++     +  S   NH D+++IE Y+ G E  C ++   +L + E
Sbjct: 185 PCSGGSSIGVYIVHTEEEYREAIRCSFDVNHEDEVVIEPYIKGREYACSIIAGKALPLIE 244

Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLD--IYKEVQRLAFLAHQAIGCRGISRSDFL 249
           I +PK   ++YE KY    +  + P  + LD     ++QR    A + +     +R+DF+
Sbjct: 245 I-IPKDGIFNYENKYQDGGAQELCPP-VSLDDKTQAKIQRAGEKAFRVLHMDVYARADFI 302

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
            D    K + LE+N  PGMTP S+ P+ A   G  + +L   ++E++   R
Sbjct: 303 VDETDGKFYCLEMNGLPGMTPASLIPKSARAIGVDYGDLCELIIEESMKTR 353


>gi|159903895|ref|YP_001551239.1| D-alanine--D-alanine ligase [Prochlorococcus marinus str. MIT 9211]
 gi|159889071|gb|ABX09285.1| D-alanine--D-alanine ligase [Prochlorococcus marinus str. MIT 9211]
          Length = 353

 Score =  145 bits (367), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 93/263 (35%), Positives = 140/263 (53%), Gaps = 25/263 (9%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+ F VLHG  GEDG +Q +L+L   P+  SG+L SAL MDK+  K   +S  +P     
Sbjct: 96  DVWFPVLHGPNGEDGTIQGLLKLTGKPFVGSGVLGSALGMDKIAMKIAFASANLP----- 150

Query: 112 LVNRFTMDSQHLISP----------------PYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
            V  F+++   LI+P                P  IKP   GSS+GI      Q +   L 
Sbjct: 151 QVKYFSINKNELINPHAHSLFIKRIEAKLGYPCFIKPANLGSSVGITKAYNKQQLIEGL- 209

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK--SDFYSYELKYSSLNSTH 213
            + + NH  +++IE+ V G EL CGV+G   +  + +   K  SD+Y Y+ KYS ++S  
Sbjct: 210 -NIAANHDPRIVIEESVTGRELECGVLGKEKMIASTVGEVKHQSDWYDYQAKYSGVSSEV 268

Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273
           ++PA I  +I K++Q L+ LA +AI   GI+R DF +   +  V   EIN  PG T  S+
Sbjct: 269 LIPAPISEEISKKIQELSLLACKAISVEGIARVDFFYKEDTNHVLINEINTLPGFTMQSM 328

Query: 274 FPEMAAYAGYSFRELLLWMVEDA 296
           +P +   +G +  +L+  +VE A
Sbjct: 329 YPMLWNQSGLNIEKLVAILVETA 351


>gi|172040458|ref|YP_001800172.1| D-alanyl-alanine synthetase A [Corynebacterium urealyticum DSM
           7109]
 gi|229463746|sp|B1VG49|DDL_CORU7 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|171851762|emb|CAQ04738.1| D-alanine-D-alanine ligase [Corynebacterium urealyticum DSM 7109]
          Length = 362

 Score =  145 bits (366), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 84/256 (32%), Positives = 140/256 (54%), Gaps = 15/256 (5%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+ F VLHG  GEDG +Q + +LL   Y  +G+LASA  MDK  +K++    G+P  P +
Sbjct: 108 DVIFPVLHGANGEDGTIQGLFDLLGARYVGNGVLASAAGMDKEFTKKIAREAGIPTGPEV 167

Query: 112 LVNRFTMDSQH---LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168
           +++  T  + H   L+  P  +KP +GGSS+GI  +   + +P  + +++S  H  +++I
Sbjct: 168 VLHGRTELTDHERELLGLPVFVKPARGGSSIGISKVDSWRDLPAAIEEAAS--HDPKVII 225

Query: 169 EQYVDGIELTCGVM--GDASLDVTEIAV------PKSDFYSYELKYSSLNSTHVLPAKIP 220
           E  + G E+ CGV+   D +L  +  A+       +  FY ++ KY     +  +PA + 
Sbjct: 226 EAMITGPEVECGVLEREDGTLVASSPAMLEGTDAGEEGFYGFDAKYLDDTVSATIPAPLD 285

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280
            +  + VQ+LA   ++A+GC G++R DF            EIN  PG TP+S++P+M   
Sbjct: 286 EETTRRVQQLAIETYRALGCTGLARVDFFV--TDAGPVLNEINTMPGFTPISMYPQMFLA 343

Query: 281 AGYSFRELLLWMVEDA 296
            G S+ +LL  +V  A
Sbjct: 344 DGVSYADLLTTLVSGA 359


>gi|307151246|ref|YP_003886630.1| D-alanine/D-alanine ligase [Cyanothece sp. PCC 7822]
 gi|306981474|gb|ADN13355.1| D-alanine/D-alanine ligase [Cyanothece sp. PCC 7822]
          Length = 377

 Score =  145 bits (366), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 104/345 (30%), Positives = 168/345 (48%), Gaps = 57/345 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASAL-----------------EDAGFKVSQI------- 36
           + +L GG S E EVS++S KA A AL                 +D  ++  +I       
Sbjct: 32  VGLLFGGRSGEHEVSINSAKAIAKALSSETNATKYQLIPIYIRKDGCWQAPEIAQAVLES 91

Query: 37  ------DVDRSVGLVLAHLKP-----DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
                 + D SVGL      P     D+ F +LHG  GEDG +Q +L L+++PY  SG+L
Sbjct: 92  GKPLSTESDDSVGLW--QFPPSVNEVDVWFPILHGPNGEDGTLQGLLTLMQVPYVGSGVL 149

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP------------PYVIKPL 133
            SA+ MDK+  K      G+P  P + + R  + S   + P            P  +KP 
Sbjct: 150 GSAVGMDKIAMKTAFKQAGLPQVPYMTLTRAQIWSNSCVFPKLGDEIEQTLGYPCFVKPA 209

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD----ASLDV 189
             GSS+GI   +    +   L  ++S++   ++++E  V   E+ C V+G+    AS+ V
Sbjct: 210 NLGSSVGIAKARTRSELETALDAAASYDR--RIIVEAGVSAREVECAVLGNDNPKASI-V 266

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
            EI    SDFY YE KY+   +  ++PA IP  I  ++Q ++  A  A+   G++R DF 
Sbjct: 267 GEITF-NSDFYDYETKYTDGRAQLLIPAPIPPQIAAQIQEMSLSAFAAVDAAGLARVDFF 325

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           +   + +V   EIN  PG T  S++P++   +G  F +L+  +++
Sbjct: 326 YVEKTGEVLINEINTLPGFTAFSMYPQLWEASGIQFPQLVDQLIQ 370


>gi|251794848|ref|YP_003009579.1| D-alanine/D-alanine ligase [Paenibacillus sp. JDR-2]
 gi|247542474|gb|ACS99492.1| D-alanine/D-alanine ligase [Paenibacillus sp. JDR-2]
          Length = 375

 Score =  145 bits (366), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 87/256 (33%), Positives = 139/256 (54%), Gaps = 17/256 (6%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+ F +LHG FGEDG +Q +LE+ +IPY  +G+LASA  MDK+  K++ +  G+P C   
Sbjct: 104 DVVFPLLHGTFGEDGTIQGLLEIADIPYVGAGVLASAAGMDKITMKKIFAYEGLPQCVFR 163

Query: 112 LVNR---------FTMDSQHLISPPYVIKPLKGGSSLGIIVIK-KDQSIP-LDLLQSSSW 160
             NR         F M+ +  +  P  +KP   GSS+GI   K +D+ I  +D     ++
Sbjct: 164 YFNRAQWEKDASFFIMECEVALGYPCFVKPSNLGSSVGISKAKNRDELIAAIDF----AF 219

Query: 161 NHGDQLLIEQYVDGIELTCGVMG--DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
               ++++E++VD  E+   V+G  D  + V     P ++FY Y+ KY    ST  +PA 
Sbjct: 220 RFDRRVIVEEFVDAREIEVSVLGNDDPKISVPGEIAPSNEFYDYKAKYVDGKSTIHIPAN 279

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278
           IP      V+ +A  A  AI   G+SR DF       ++F  E+N  PG TP+S++P M 
Sbjct: 280 IPNKTADAVRDMALRAFLAIDGAGLSRVDFFLRKTDGQLFINEVNTMPGFTPISMYPLMW 339

Query: 279 AYAGYSFRELLLWMVE 294
             +G  +++LL  +++
Sbjct: 340 KESGLPYKDLLDKLID 355


>gi|159036808|ref|YP_001536061.1| D-alanine--D-alanine ligase [Salinispora arenicola CNS-205]
 gi|157915643|gb|ABV97070.1| D-alanine--D-alanine ligase [Salinispora arenicola CNS-205]
          Length = 360

 Score =  145 bits (366), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 86/257 (33%), Positives = 141/257 (54%), Gaps = 15/257 (5%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-S 110
           D+ F VLHG +GEDG +Q +LE+  IPY  + + ASA +MDK  +K++ ++ G+PV P +
Sbjct: 99  DVVFPVLHGAYGEDGTIQGMLEMAGIPYVGANVFASAAAMDKEFTKKLCAAEGIPVGPYA 158

Query: 111 ILVNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168
           +L +  T+  Q    +  P  +KP + GSS GI  +       LD   +++     ++L+
Sbjct: 159 VLRSGMTLTEQDKQRLGLPVFVKPSRAGSSFGITRVT--DWADLDDAVANARKIDPKVLV 216

Query: 169 EQYVDGIELTCGVMGDASLDVTEIA-------VPKSDFYSYELKYSSLNST--HVLPAKI 219
           E  V G E+ CGV+   +  V E +       V   DFY +E KY   ++   + +PA +
Sbjct: 217 ESAVIGREIECGVLEAEAGGVPEASALAEVRVVGDYDFYDFEAKYIDADAACEYDIPADL 276

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279
           P  + ++VQ  A  A  A+ C G++R+DF   P    V+  E+N  PG TP S+FP M A
Sbjct: 277 PERVTRQVQEYAVRAFTALDCAGLARADFFVTP-ELDVYLNEVNTMPGFTPTSMFPRMWA 335

Query: 280 YAGYSFRELLLWMVEDA 296
            +G  +++L+  ++  A
Sbjct: 336 ASGLEYQKLVNRLIRTA 352


>gi|46190210|ref|ZP_00121771.2| COG1181: D-alanine-D-alanine ligase and related ATP-grasp enzymes
           [Bifidobacterium longum DJO10A]
 gi|189439975|ref|YP_001955056.1| D-alanyl-alanine synthetase A [Bifidobacterium longum DJO10A]
 gi|259645162|sp|B3DTT9|DDL_BIFLD RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|189428410|gb|ACD98558.1| D-alanine-D-alanine ligase [Bifidobacterium longum DJO10A]
          Length = 395

 Score =  145 bits (366), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 92/292 (31%), Positives = 153/292 (52%), Gaps = 26/292 (8%)

Query: 28  DAGFKVSQIDV-DRSVGLVLAHLKP-DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
           D+GF  S + + D  +  VL  L   D    VLHG +GEDG VQ +LE++ +PY   G+ 
Sbjct: 101 DSGFGTSFVSMSDPEMHHVLTSLGHVDAVLPVLHGPYGEDGTVQGLLEMMGVPYVGCGVF 160

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP--------PYVIKPLKGGS 137
           ASA  MDK  +K V+ + G+P  P + V+     +  +++         P  +KP + GS
Sbjct: 161 ASAACMDKHYTKVVLDAAGIPTAPGVTVDARNFTAADVLAEIEDAGLTYPLFVKPSRAGS 220

Query: 138 SLGIIVIKK--DQSIPLDLLQ---SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192
           S G+  ++K  D+    D L    +++  H  ++L+EQ +DG E+ C V+   + D  E 
Sbjct: 221 SFGVTKVEKADDRETQQDRLAAAIATAGEHDWKVLVEQGIDGREIECAVLCPKAGDEPEA 280

Query: 193 AVP---------KSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
           + P            FY ++ KY   +++HV +PA +P+ + ++V+ +A  A +A+   G
Sbjct: 281 SWPGEIVLDHQNDDQFYDFDSKYMDASASHVEVPANLPVSVLEDVRDVARRAFKAVDGVG 340

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           +SR D    P    V   EIN  PG TP+S++P+     G S+ EL+  ++E
Sbjct: 341 LSRVDTFVTP-DGTVMVNEINTMPGFTPISMYPKAWDATGVSYTELITRLIE 391


>gi|145224798|ref|YP_001135476.1| D-alanyl-alanine synthetase A [Mycobacterium gilvum PYR-GCK]
 gi|190359168|sp|A4TE25|DDL_MYCGI RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|145217284|gb|ABP46688.1| D-alanine--D-alanine ligase [Mycobacterium gilvum PYR-GCK]
          Length = 367

 Score =  145 bits (366), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 92/275 (33%), Positives = 149/275 (54%), Gaps = 20/275 (7%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           + +  + G VLA    D+ F VLHG +GEDG +Q +LEL  +PY  +G+LASA  MDK  
Sbjct: 91  VSLGEAAGEVLA--SADVVFPVLHGPYGEDGTIQGLLELAGVPYVGAGVLASAAGMDKEF 148

Query: 96  SKQVVSSCGVPVCPSILV----NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
           +K++++S G+PV   +++    +  ++  +  +  P  +KP +GGSS+G+  +     +P
Sbjct: 149 TKKLLASAGLPVGDHVVLRARDSTLSLQDRERLGLPVFVKPSRGGSSIGVSRVTAWDELP 208

Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG--DASLDVT---EIAVP-----KSDFYS 201
             +    +  H  +++IE  V G EL CGV+   D  L+ +   EI V      +  FY 
Sbjct: 209 AAI--ELARRHDPKVIIEAAVPGRELECGVLEFPDGHLEASTLGEIRVEGVRGREDGFYD 266

Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
           +E KY    +   +PAK+  D+ + ++ L+  A  AI C+G++R DF        +   E
Sbjct: 267 FETKYLDDGAELDVPAKVDDDVAEAIRALSLRAFTAIDCQGLARVDFFLTDDGPVIN--E 324

Query: 262 INVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           IN  PG T +S++P M A +G  +  LL  MVE A
Sbjct: 325 INTMPGFTTISMYPRMWAASGVDYPTLLATMVETA 359


>gi|119717515|ref|YP_924480.1| D-alanine--D-alanine ligase [Nocardioides sp. JS614]
 gi|119538176|gb|ABL82793.1| D-alanine--D-alanine ligase [Nocardioides sp. JS614]
          Length = 373

 Score =  145 bits (366), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 93/261 (35%), Positives = 145/261 (55%), Gaps = 23/261 (8%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+ F +LHG +GEDG +Q +LE+  + Y  +G+LASA+SMDK   K V+++ G+PV PS+
Sbjct: 108 DVVFPLLHGPWGEDGTIQGLLEMAGVRYVGAGVLASAVSMDKAYMKVVLAAAGLPVLPSV 167

Query: 112 LVN--RFTMDSQHL------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
            V    +  D+         I  P  +KP +GGSSLGI   K   +  LD     ++ H 
Sbjct: 168 TVTTREWARDAAGCRARADEIGYPLFVKPARGGSSLGI--SKVHDATELDGAIELAFEHD 225

Query: 164 DQLLIEQ-YVDGIELTCGVMGDASLDVT-EIAVPKS-------DFYSYELKYSSLNSTHV 214
            ++L+E   +D  E+ CGV+   ++D T E +VP         +FY +  KY     T +
Sbjct: 226 PKVLVETAAIDAREVECGVL--QAVDGTPETSVPAEIRISGAHEFYDFAAKYLPEEHTEL 283

Query: 215 -LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273
            +PA +P  + ++V+ L+  A +A+GC G++R DF   P  R V   EIN  PG TP S+
Sbjct: 284 DVPADLPEALVRQVRELSVRAFEAVGCEGLARVDFFVLPGERLVV-NEINTMPGFTPTSM 342

Query: 274 FPEMAAYAGYSFRELLLWMVE 294
           FP M A +G  +  L+  +++
Sbjct: 343 FPRMWAASGLDYPALVDRLIQ 363


>gi|228950414|ref|ZP_04112574.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228809229|gb|EEM55690.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
          Length = 304

 Score =  145 bits (366), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 92/305 (30%), Positives = 165/305 (54%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGG+SSE++VS+ +G    + L+   +++  I ++  + L+      D A   LHG
Sbjct: 3   IGVIMGGVSSEKQVSIMTGNEMIANLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---FT 117
            +GEDG VQ  LE L IPY+ S +L+S + MDK  SK+++   G+     I + +     
Sbjct: 63  KYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNISKKILRYEGIETPDWIELTKMEDLN 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGI-IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
           +D    +  P V+KP  GGSS+G+ IV  KD+ I + L     W+   +++IE+Y+ G E
Sbjct: 123 LDELDKLGFPLVVKPNSGGSSVGVKIVYNKDELISM-LETVFEWDS--EVVIEKYIKGEE 179

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +TC +     L +  I    ++F+ Y  KY   ++   +  ++P ++ + V + +   ++
Sbjct: 180 ITCSIFDGKQLPIISIR-HAAEFFDYNAKYDDASTIEEV-IELPAELKERVNKASLACYK 237

Query: 237 AIGCRGISRSDFLF-DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           A+ C   +R D +  D +    + +E+N  PGMT  S+ P+ A  AG  + +LL  ++E 
Sbjct: 238 ALKCSVYARVDMMVKDGIP---YVMEVNTLPGMTQASLLPKSADAAGIHYSKLLDMIIET 294

Query: 296 ASCLR 300
           +  +R
Sbjct: 295 SLRVR 299


>gi|298252073|ref|ZP_06975876.1| D-alanine/D-alanine ligase [Ktedonobacter racemifer DSM 44963]
 gi|297546665|gb|EFH80533.1| D-alanine/D-alanine ligase [Ktedonobacter racemifer DSM 44963]
          Length = 372

 Score =  145 bits (366), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 80/254 (31%), Positives = 141/254 (55%), Gaps = 13/254 (5%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           DL F VLHG +GEDG +Q + E+  IPY   G+L SA+ MDK   K +  + G+PV  S+
Sbjct: 105 DLLFPVLHGPYGEDGTIQGLFEMANIPYVGCGVLGSAVGMDKEIMKVLFQAAGLPVVDSL 164

Query: 112 LVNRFTM---------DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
           +   F           + +  +S P  +KP   GSS+G+   +  Q +   +  S ++ +
Sbjct: 165 VYRHFQWKRDPEGLLNEVEQRLSYPCFVKPANLGSSVGVSNARNRQEMARAI--SEAFTY 222

Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVTEIA--VPKSDFYSYELKYSSLNSTHVLPAKIP 220
             +++IEQ ++  E +C ++G+    V+++   +P  +F  YE KY +     V+P+ +P
Sbjct: 223 DRKVIIEQGLECREFSCAILGNEYPLVSQVGEILPGDEFSDYEDKYVNHTIQFVIPSTLP 282

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280
            +  +E++ +A  A+QA+   G+SR DF  D    + +  E+N  PG T +S++P++ A 
Sbjct: 283 AETARELREMALRAYQALDLSGLSRVDFFQDKTGGQFYINEVNTLPGFTDMSLYPKLWAA 342

Query: 281 AGYSFRELLLWMVE 294
           +G S+ ELL  ++E
Sbjct: 343 SGLSYPELLDRLIE 356


>gi|68536294|ref|YP_250999.1| putative D-alanine-D-alanine ligase [Corynebacterium jeikeium K411]
 gi|123650831|sp|Q4JUX6|DDL_CORJK RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|68263893|emb|CAI37381.1| putative D-alanine-D-alanine ligase [Corynebacterium jeikeium K411]
          Length = 373

 Score =  145 bits (366), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 87/266 (32%), Positives = 140/266 (52%), Gaps = 19/266 (7%)

Query: 43  GLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS 102
           G V A +  D+ F VLHG  GEDG VQ +L+L  + Y  +G+LASA  MDK  +K++   
Sbjct: 113 GEVFAQV--DVVFPVLHGVNGEDGTVQGVLDLAGVRYVGNGVLASAAGMDKDFTKRLARE 170

Query: 103 CGVPVCPSILV---NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
            G+PV   +++      T + +  +  P  +KP +GGSS+GI   K D     D     +
Sbjct: 171 AGIPVGEELILFQPRELTAEEKERLGLPVFVKPARGGSSIGI--SKVDSWEEFDAAIDLA 228

Query: 160 WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP---------KSDFYSYELKYSSLN 210
           +++ +++++E  + G E+ CGV+  A   +   +VP            FY ++ KY    
Sbjct: 229 FSNDNKVIVEAMIHGAEVECGVLQHADGSIVS-SVPAMLNGTEDGAEGFYGFDAKYVDST 287

Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270
            +  +PA +P +  KE+++LA     A+GC GI+R DF            EIN  PG TP
Sbjct: 288 VSATIPAPLPAETIKEIRQLAIRTFNALGCDGIARVDFF--ATENGPVLNEINTMPGFTP 345

Query: 271 VSIFPEMAAYAGYSFRELLLWMVEDA 296
           +S++P+M A  G SF +L+  ++  A
Sbjct: 346 ISMYPKMFAAEGVSFGDLVSALIARA 371


>gi|319953857|ref|YP_004165124.1| d-alanine--d-alanine ligase [Cellulophaga algicola DSM 14237]
 gi|319422517|gb|ADV49626.1| D-alanine--D-alanine ligase [Cellulophaga algicola DSM 14237]
          Length = 326

 Score =  145 bits (365), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 102/328 (31%), Positives = 165/328 (50%), Gaps = 34/328 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40
           +A++MGG SSE ++SL SG       +   F +  I +                    D 
Sbjct: 5   IAIIMGGYSSEYKISLKSGSVVYKYTDKEKFNLFCIHIFKEKWVYVTENKEEFPVNKHDF 64

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           SV +    +  D  FN +HG+ GEDGL+Q+  ELL IP T      SAL+ +K     V+
Sbjct: 65  SVEINNQKITFDCIFNAIHGSPGEDGLMQSYFELLNIPQTSCDAYQSALTFNKRDLLSVL 124

Query: 101 SSCGVPVCPSILVN-RFTMDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
              G+    S  +N    +D + +++    P  +K  K GSS GI+ + K + +   +  
Sbjct: 125 KPYGIKAAASYYLNLGDAIDEESIVAKVGLPCFVKANKAGSSFGIMKVYKKEDLKAAI-- 182

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMG----DASLDVTEIAVPKSDFYSYELKYSSLNST 212
            +++   D+++IE ++DG E++ GV+        L VTEI V ++DF+ YE KY+   S 
Sbjct: 183 ENAYKEDDEIIIEGFLDGTEVSVGVLKYKGVTKVLPVTEI-VSENDFFDYEAKYAG-KSQ 240

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
            + PA+I     ++V  LA  A+  +  +G SRS+F+F  +  + F LE+N  PG+T  S
Sbjct: 241 EITPARITKTQEQKVSDLAKKAYDVLKMKGFSRSEFIF--IDDEPFMLEMNTNPGLTEES 298

Query: 273 IFPEMAAYAGYSFRELLLWMVEDASCLR 300
           I P+ A  AG S  EL    + +A  ++
Sbjct: 299 ILPQQAKVAGISLPELFENAINEALTVK 326


>gi|266621471|ref|ZP_06114406.1| D-alanine--D-alanine ligase [Clostridium hathewayi DSM 13479]
 gi|288866846|gb|EFC99144.1| D-alanine--D-alanine ligase [Clostridium hathewayi DSM 13479]
          Length = 358

 Score =  145 bits (365), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 109/341 (31%), Positives = 167/341 (48%), Gaps = 54/341 (15%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKV---------------------------SQ 35
           VL GG S EREVSLSSG   A+AL + G +V                           S+
Sbjct: 22  VLAGGYSPEREVSLSSGSLIANALMEQGHEVFFLDPWPGIREGEEVRYRTREEGYHFSSE 81

Query: 36  I-----DVDR------------SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIP 78
           I     D+++              G++ A  + D+ F  LHG  GEDG +QA+LE   IP
Sbjct: 82  IGMEAPDLEKLRAGHGMKKTLIGPGVLKACREADMVFIALHGGAGEDGQIQAVLEAYGIP 141

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSS 138
           +T S      L+MDK  SK  +   GV      L  +        +  P V+KPL  GSS
Sbjct: 142 HTGSSWKGCLLAMDKNISKIFMRMAGVATPDWYLAEKGKTSRPDFL--PCVVKPLDCGSS 199

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD 198
           +G+ ++++++     L   ++++HG ++L+E+ + G E + GV+GD +L   EI +P+S 
Sbjct: 200 VGVTIVEREEEWSAAL--EAAFSHGGRVLVEKKITGREFSVGVLGDRALPAIEI-IPESG 256

Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEV--QRLAFLAHQAIGCRGISRSDFLFDPLSRK 256
           FY Y+ KY    +  + PA I  D  +EV  +  A   H+ +     SR DF+ D     
Sbjct: 257 FYDYQNKYQPGMTREICPAWI--DGMQEVKMKETALTVHRILELGYYSRVDFMMDE-DGA 313

Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           ++ LE N  PGMTP+S+ P+ A  AG ++ EL   +V +  
Sbjct: 314 IYCLEANTLPGMTPLSLLPQEAKAAGITYHELCEAIVNNGK 354


>gi|94986220|ref|YP_605584.1| D-alanine--D-alanine ligase [Deinococcus geothermalis DSM 11300]
 gi|166198483|sp|Q1IWG9|DDL_DEIGD RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|94556501|gb|ABF46415.1| D-alanine--D-alanine ligase [Deinococcus geothermalis DSM 11300]
          Length = 339

 Score =  145 bits (365), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 106/335 (31%), Positives = 170/335 (50%), Gaps = 51/335 (15%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQI------------DVDRSV-------- 42
           +L GG S E EVSL S ++  +AL    F V+ +            D  R++        
Sbjct: 7   LLAGGQSEEHEVSLRSARSVLAALPRDQFDVTPVVISPQGRWLPPTDTQRALETGEAVRG 66

Query: 43  GLVLAHLKP-----DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSK 97
           G ++ H        D  F +LHG  GEDG +Q +L L  IP+  SG+L SA+SMDK+ +K
Sbjct: 67  GDLVLHRAASAEGYDAVFPLLHGPMGEDGTIQGLLTLAGIPFVGSGVLGSAVSMDKVMTK 126

Query: 98  QVVSSCGVP-VCPSILVNRFTMDSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQS 149
           QV++S G+P V   + V R   +    +         P  +KP   GSS+GI  +     
Sbjct: 127 QVLASVGMPQVAWRLAVRREWQERPQEVRARAGELGYPLFVKPANLGSSVGISKVSGPGE 186

Query: 150 I--PLDLLQSSSWNHGDQLLIEQYV--DGIELTCGVMGDASLDVTEIAVP------KSDF 199
           +   LDL    +++ G ++++E        EL  G++G+ +     IA P      ++DF
Sbjct: 187 LERALDL----AFSLGRRVILEAMTAHKPRELEVGILGNDA----PIASPVGELRFEADF 238

Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
           Y YE KY+   +T  +PA +P +I + V+ LA  A + + C G++R DF +   + ++F 
Sbjct: 239 YDYETKYTEGRATMHIPAPLPPEIAERVRMLALTAFRTLDCAGLARVDFFYVEQTGELFL 298

Query: 260 LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            E+N  PG T  S++P++   AG S+ EL+  +VE
Sbjct: 299 NEVNTMPGFTTTSMYPKLFEAAGLSYSELVTRLVE 333


>gi|228927668|ref|ZP_04090719.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228832012|gb|EEM77598.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 304

 Score =  145 bits (365), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 92/305 (30%), Positives = 165/305 (54%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGG+SSE++VS+ +G    + L+   +++  I ++  + L+      D A   LHG
Sbjct: 3   IGVIMGGVSSEKQVSIMTGNEMIANLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---FT 117
            +GEDG VQ  LE L IPY+ S +L+S + MDK  SK+++   G+     I + +     
Sbjct: 63  KYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNISKKILRYEGIETPDWIELTKMEDLN 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGI-IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
            D    +  P V+KP  GGSS+G+ IV  KD+ I + L     W+   +++IE+Y+ G E
Sbjct: 123 FDELDKLGFPLVVKPNSGGSSVGVKIVYNKDELISM-LETVFEWDS--EVVIEKYIKGEE 179

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +TC +     L +  I    ++F+ Y  KY + ++   +  ++P ++ + V + +   ++
Sbjct: 180 ITCSIFDGKQLPIISIR-HAAEFFDYNAKYDNASTIEEV-IELPAELKERVNKASLACYK 237

Query: 237 AIGCRGISRSDFLF-DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           A+ C   +R D +  D +    + +E+N  PGMT  S+ P+ A  AG  + +LL  ++E 
Sbjct: 238 ALKCSVYARVDMMVKDGIP---YVMEVNTLPGMTQASLLPKSADAAGIHYSKLLDMIIET 294

Query: 296 ASCLR 300
           +  +R
Sbjct: 295 SLRVR 299


>gi|295090181|emb|CBK76288.1| D-alanine--D-alanine ligase [Clostridium cf. saccharolyticum K10]
          Length = 387

 Score =  145 bits (365), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 77/252 (30%), Positives = 138/252 (54%), Gaps = 10/252 (3%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D AF VLHG  GEDG +Q + E+  IP    G+L+SAL MDK R+ ++V + G+ V  S 
Sbjct: 136 DAAFPVLHGRNGEDGTIQGLFEMAGIPVVGCGVLSSALCMDKDRAHKLVHTAGIAVPSSF 195

Query: 112 LVNR-----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQL 166
           ++ +       +     I  P  +KP+K GSS GI  +     +P  L    ++ +  ++
Sbjct: 196 VLGKSASVATALQQAEKIGYPLFVKPVKAGSSFGITKVSSSNELPAAL--ELAFEYDKRV 253

Query: 167 LIEQYVDGIELTCGVMGDASLDVTEIAVPK--SDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           ++E+ + G E+ C ++GD  L V E+   +    F+++  KY+   S   +PA+IP +  
Sbjct: 254 IVEECISGFEVGCAILGDEDLTVGEVDEIELSGGFFNFTEKYTLKTSAIHVPARIPQNTA 313

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
           +++++ A   ++ + C+G +R D    P S ++ + E+N  PG T  S +P M   AG++
Sbjct: 314 EQIKQAAKTIYRTLDCQGFARVDLFLTP-SGEIVFNEVNTIPGFTTHSRYPNMMKAAGFT 372

Query: 285 FRELLLWMVEDA 296
           F +++  ++E A
Sbjct: 373 FEQIVSALIEQA 384


>gi|226311631|ref|YP_002771525.1| D-alanine--D-alanine ligase [Brevibacillus brevis NBRC 100599]
 gi|226094579|dbj|BAH43021.1| D-alanine--D-alanine ligase [Brevibacillus brevis NBRC 100599]
          Length = 375

 Score =  145 bits (365), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 100/350 (28%), Positives = 166/350 (47%), Gaps = 58/350 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVS----QIDVDRSVGLVLAHLKPD---- 52
           + ++ GG SSE EVSL +  +   A++   ++V+    Q+D     G  LA   PD    
Sbjct: 8   LGIIYGGKSSEHEVSLRTAMSIMQAVDANKYEVTPVYVQLDGSWVTGETLAGQLPDKIEA 67

Query: 53  -------------------------------------LAFNVLHGNFGEDGLVQAILELL 75
                                                + F V+HG FGEDG +Q +LEL 
Sbjct: 68  LRLSAKTPVSNEATETGQELAVTSKSGSLFAMNEQMDVVFPVVHGPFGEDGTIQGLLELA 127

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF--------TMDS-QHLISP 126
            IPY  +G++ASA+ MDK   K V +  G+P    + + R          MD  +  +  
Sbjct: 128 NIPYVGTGVMASAVGMDKWMMKTVFAQAGLPQVKYVGLLRSQWEKGQDDVMDRIERELGY 187

Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186
           P  +KP   GSS+GI   K  + +   L  ++ ++   +L++E++V   EL  GV+G+  
Sbjct: 188 PCFVKPANMGSSVGINKAKNREELKHALDVAAKFDR--RLIVEEFVQVRELEIGVLGNEE 245

Query: 187 LDVTEIA--VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244
           L  + +   +   +FY YE KY    +   +PA +P  + +++  +A  A QA+   G+S
Sbjct: 246 LMTSVVGEVIAAKEFYDYEAKYKGAGTELSIPAIVPEHVSEQIAEIAKQAFQALDGSGLS 305

Query: 245 RSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           R DF +D  + K++  E+N  PG TP S++P +   AG  + EL+  +V+
Sbjct: 306 RVDFFWDEKNDKLYINEVNTMPGFTPFSMYPMLFQAAGVGYSELIDRLVQ 355


>gi|229005687|ref|ZP_04163391.1| D-alanine--D-alanine ligase [Bacillus mycoides Rock1-4]
 gi|228755621|gb|EEM04962.1| D-alanine--D-alanine ligase [Bacillus mycoides Rock1-4]
          Length = 304

 Score =  145 bits (365), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 92/304 (30%), Positives = 163/304 (53%), Gaps = 11/304 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGG+SSE++VSL +G+   + L+ + ++V  I ++    LV      D+A   LHG
Sbjct: 3   VGVIMGGVSSEKQVSLMTGEEMIAHLDKSKYEVVPIKLNDKKELVEKVRNLDIALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN---RFT 117
            +GEDG +Q  LE L +PYT S +L+S + MDK  SK+++    +     I ++      
Sbjct: 63  EYGEDGTIQGTLETLGVPYTGSVMLSSGICMDKNMSKKMIRYEDIQTPDWIHLSNTEELQ 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
           +D    +  P V+KP  GGSS+G+ ++    S+   L     W+   +++IE+Y+ G E+
Sbjct: 123 LDEIDKMGYPLVVKPNSGGSSVGVKIVYDKDSLLSSLEDVFKWD--SEIVIEKYIKGEEI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC ++    L +  I    ++F+ Y  KY  + +   +  ++P   Y+ V   A   ++A
Sbjct: 181 TCSILDGKLLPIISIQ-HTAEFFDYHAKYDDIATIEEV-VELPATTYERVVEAAMTCYRA 238

Query: 238 IGCRGISRSDFLF-DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           + C   +R D +  D +    + +E+N  PGMT  S+ P+ A  AG S+ +LL  ++E +
Sbjct: 239 LKCSVYARVDIIIKDGIP---YVMEVNTLPGMTKNSLLPKSAHAAGISYSKLLDMIIETS 295

Query: 297 SCLR 300
             +R
Sbjct: 296 LQIR 299


>gi|326795768|ref|YP_004313588.1| D-alanine--D-alanine ligase [Marinomonas mediterranea MMB-1]
 gi|326546532|gb|ADZ91752.1| D-alanine--D-alanine ligase [Marinomonas mediterranea MMB-1]
          Length = 315

 Score =  145 bits (365), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 99/299 (33%), Positives = 162/299 (54%), Gaps = 15/299 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-----DRSVGLVLAHLKPDLAF 55
           +AVL GG  +EREVSL SG    +AL+  G+    ID+     DR+    L     D+AF
Sbjct: 8   IAVLYGGRCAEREVSLESGGLILNALKQKGYDAFGIDLYGARHDRNPIDQLRAEPFDIAF 67

Query: 56  NVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR 115
             LHG  GEDG +QA+L+L+  PYT S  LA AL+MDK+ +K++    G+P  P  + + 
Sbjct: 68  IGLHGGEGEDGHIQALLDLMSKPYTGSRQLACALAMDKLMTKKLWKGLGIPT-PDYIADA 126

Query: 116 FTMD---SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
             +     +  +S P ++KP + GS++GI   K D +  L      +  +  ++L+E+++
Sbjct: 127 SDVSVECVERQLSYPVIVKPSREGSTIGI--SKADNTEQLMQALRDAREYDSEILVEEFI 184

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSD--FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
           +G E T  ++ D +     +  P  D   Y YE KY + ++ + LP+ +  D    ++ L
Sbjct: 185 EGPEFTVSIINDEAYPAIGLK-PSEDHQLYDYEAKYLADDTEYRLPSGLSDDDESRLKAL 243

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           +  A+ A+GC+G  R D +    +     LE+N  PGMT  S+ P  AA+ G S+++L+
Sbjct: 244 SLDAYLAVGCKGWGRVDVMRRN-NGDFSVLEVNTSPGMTSHSLVPMAAAHVGISYQDLV 301


>gi|229173269|ref|ZP_04300816.1| D-alanine--D-alanine ligase [Bacillus cereus MM3]
 gi|228610239|gb|EEK67514.1| D-alanine--D-alanine ligase [Bacillus cereus MM3]
          Length = 304

 Score =  145 bits (365), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 91/299 (30%), Positives = 163/299 (54%), Gaps = 13/299 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGG+SSE++VS+ +G    + L+   +++  I ++  + L+      D A   LHG
Sbjct: 3   IGVIMGGVSSEKQVSIMTGNEMIANLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---FT 117
            +GEDG VQ  LE L IPY+ S +L+S + MDK  SK+++   G+     I + +     
Sbjct: 63  KYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNISKKILRYEGIETPDWIELTKMADLN 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGI-IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
           +D    +  P V+KP  GGSS+G+ IV  KD+ I + L     W+   +++IE+Y+ G E
Sbjct: 123 LDELDKLGFPLVVKPNSGGSSVGVKIVYDKDELISM-LETVFEWDS--EVVIEKYIKGDE 179

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +TC +     L +  I    ++F+ Y  KY  +++   +  ++P ++ + V + +   ++
Sbjct: 180 ITCSIFDGKQLPIISIR-HAAEFFDYNAKYDDVSTIEEV-IELPAELKEHVNKASLACYK 237

Query: 237 AIGCRGISRSDFLF-DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           A+ C   +R D +  D +    + +E+N  PGMT  S+ P+ A  AG  + +LL  ++E
Sbjct: 238 ALKCSVYARVDMMVKDGIP---YVMEVNTLPGMTQASLLPKSADAAGIHYSKLLDMIIE 293


>gi|89095257|ref|ZP_01168178.1| D-alanylalanine synthetase [Oceanospirillum sp. MED92]
 gi|89080464|gb|EAR59715.1| D-alanylalanine synthetase [Oceanospirillum sp. MED92]
          Length = 315

 Score =  145 bits (365), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 97/303 (32%), Positives = 155/303 (51%), Gaps = 11/303 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVG-----LVLAHLKPDLAF 55
           +AV+ GG SSER VSL SG A   AL  AG     ID+    G     + L     D AF
Sbjct: 16  VAVIYGGNSSERSVSLKSGAAVLGALSRAGVDAFGIDLYGEDGTEQPLVQLQRENFDRAF 75

Query: 56  NVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR 115
            +LHG  GEDG +Q  L++L  PYT SG+ ASA+ MDK+R+K +     +P  P  ++ +
Sbjct: 76  LILHGPVGEDGTLQGALDMLGKPYTGSGVAASAIGMDKLRTKLIWLGHNIPTPPFAVIEQ 135

Query: 116 FT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
                +    +  P ++KP   GSS+G+  +   + +   L  ++ ++    ++ E ++ 
Sbjct: 136 GQDLAEVAERLKWPMIVKPAHEGSSIGMSKVSSQKELEAALGTAAEYDR--TVIAESWMS 193

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           G E T  ++   +L   ++ +    FY ++ KY + ++ +     +  +   E++RLA  
Sbjct: 194 GGEYTVAILDGQALPPIQL-ITDHAFYDFDAKYVANDTQYRFDLDLTSEQTDELKRLAEK 252

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           A  A+GCRG  R D + D        LE+N  PGMT  S+ P  A  AG SF EL++ ++
Sbjct: 253 AFSAVGCRGWGRVDAMRDECGNFQL-LEVNTAPGMTDHSLVPMAAKEAGISFEELVVEIL 311

Query: 294 EDA 296
             A
Sbjct: 312 RTA 314


>gi|323706263|ref|ZP_08117830.1| D-alanine/D-alanine ligase [Thermoanaerobacterium xylanolyticum
           LX-11]
 gi|323534427|gb|EGB24211.1| D-alanine/D-alanine ligase [Thermoanaerobacterium xylanolyticum
           LX-11]
          Length = 362

 Score =  145 bits (365), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 104/342 (30%), Positives = 172/342 (50%), Gaps = 56/342 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI-------------DVDR-SVG--- 43
           +AVL GG S E EVS  S  +  + ++   ++V  +             DVD+ + G   
Sbjct: 6   VAVLFGGQSGEHEVSRVSATSIINNIDREKYEVYMVGITKRGQWYLYSGDVDKIATGEWE 65

Query: 44  --LVLAHLKP--------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTH 81
              V A + P                    D+ F VLHG  GEDG VQ ++ELLE+PY  
Sbjct: 66  KEAVPALIGPSTMYKGIIAFKDKSYEFYPIDVVFPVLHGPNGEDGTVQGLMELLEMPYVG 125

Query: 82  SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-----------QHLISPPYVI 130
             +L+S+L MDK+ SK++    G+P     +V R  ++               I  P  +
Sbjct: 126 PNVLSSSLCMDKVFSKRIFLESGIPTPKFTVVYRKNLNDVDKHEKIRSEISEKIGYPCFV 185

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190
           KP   GSS+GI  +  +  + +D L+ ++  +  ++++E+ +D  E+ C V+G+ + + +
Sbjct: 186 KPANMGSSVGISKVHNEGEL-IDALKIAA-KYDRKIIVEEGIDAREIECSVLGNDNPEAS 243

Query: 191 ---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
              EI VP  +FY Y+ KY    S   +PA IP    +E++ LA  A+ A+  RG++R D
Sbjct: 244 VAGEI-VPAHEFYDYDAKYFDEASKLFIPAPIPDAKMEEIRELAIKAYTALDVRGMARVD 302

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           FL D  + KV+  E+N  PG T +S++P++   +G  + EL+
Sbjct: 303 FLMDKNTGKVYLNELNTIPGFTQISMYPKLWEASGKPYSELI 344


>gi|327475203|gb|AEA77196.1| D-alanyl-alanine synthetase A [Bacillus sp. 15.4]
          Length = 358

 Score =  144 bits (364), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 100/342 (29%), Positives = 170/342 (49%), Gaps = 52/342 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI----------------DVDRSVGL 44
           + +L GG S+E +VSL + KA   AL++  + +  I                 V+ +  L
Sbjct: 5   ICLLYGGKSAEHQVSLQTAKAVIGALDNDKYDIHPIYISEEGQWVKGPQLQGPVENAKEL 64

Query: 45  VLAH------------LKP--------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84
                           L P        D+   +LHG  GEDG VQ +LELL +PY  +G+
Sbjct: 65  AFTEGEAIAPNALSTTLSPEESEGGTFDVILPLLHGPNGEDGTVQGMLELLNLPYVGNGV 124

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVNRFT---------MDSQHLISPPYVIKPLKG 135
           LASA  MDK+  K + +  G+P    +   + T         +D +  +  P  +KP   
Sbjct: 125 LASAAGMDKVIMKNLYAQAGIPQVNYVWYLKKTWESDPEAAYLDVEKELGYPCFVKPANL 184

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EI 192
           GSS+GI      + + L   ++  ++   +++IEQ V   E+  GV+G+   + +   EI
Sbjct: 185 GSSVGISKASSREELILAFKEAFQFDR--KIIIEQGVKAREIELGVLGNDEPECSVPGEI 242

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            +PK DFY Y+ KY   ++  ++PA+IP  IY++++R+A  + +A+ C G+ R+DF    
Sbjct: 243 -LPKKDFYDYKAKYEDGDTALIIPAEIPEHIYEDMKRIAVDSFKALDCSGLVRADFFLTE 301

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
               ++  E+N  PG TP S+FP +  ++G  + EL+  +V+
Sbjct: 302 -DGGIYMNEVNTMPGFTPFSMFPLLWKHSGVEYPELIERLVQ 342


>gi|49479200|ref|YP_036716.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|49330756|gb|AAT61402.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar
           konkukian str. 97-27]
          Length = 304

 Score =  144 bits (364), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 92/305 (30%), Positives = 164/305 (53%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGG+SSE++VS+ +G    + L+   +++  I ++  + L+      D A   LHG
Sbjct: 3   IGVIMGGVSSEKQVSIMTGNEMIAHLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---FT 117
            +GEDG VQ  LE L IPY+ S +L+S + MDK  SK+++   G+     I + +     
Sbjct: 63  KYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNMSKKILRYEGIETPDWIELTKMEDLN 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGI-IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
            D    +  P V+KP  GGSS+G+ IV  KD+ I + L     W+   +++IE+Y+ G E
Sbjct: 123 FDELDKLGFPLVVKPNSGGSSVGVKIVYDKDELISM-LETVFEWDS--EVVIEKYIKGDE 179

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +TC +     L +  I    ++F+ Y  KY   ++   +  ++P ++ + V + +   ++
Sbjct: 180 ITCSIFDGKQLPIISIR-HAAEFFDYNAKYDDTSTIEEV-IELPAELKERVNKASLACYK 237

Query: 237 AIGCRGISRSDFLF-DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           A+ C   +R D +  D +    + +E+N  PGMT  S+ P+ A  AG  + +LL  ++E 
Sbjct: 238 ALKCSVYARVDMMVKDGIP---YVMEVNTLPGMTQASLLPKSADAAGIHYSKLLDMIIET 294

Query: 296 ASCLR 300
           +  +R
Sbjct: 295 SLRVR 299


>gi|284046364|ref|YP_003396704.1| D-alanine/D-alanine ligase [Conexibacter woesei DSM 14684]
 gi|283950585|gb|ADB53329.1| D-alanine/D-alanine ligase [Conexibacter woesei DSM 14684]
          Length = 309

 Score =  144 bits (364), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 108/301 (35%), Positives = 156/301 (51%), Gaps = 19/301 (6%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62
           V  GG S EREVS  SG+  A AL   G  V  IDV      V+   +PD  F  LHG  
Sbjct: 5   VAYGGRSLEREVSARSGQQAAKALRQLGHAVELIDVGADFVDVVQRAEPDFVFIALHGVG 64

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--SILVNRF---- 116
           GEDG VQ +LE+L++PYT S  LASAL +DK   K V    GVP  P  S     F    
Sbjct: 65  GEDGTVQDLLEILQVPYTGSDALASALCLDKHTFKSVCELRGVPTPPWHSFTKQAFADYG 124

Query: 117 ---TMDS-QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
              T+D+         V+KP + GSS G+ V+++   +   +L + S++  D++L+E+YV
Sbjct: 125 AGKTLDALWQQFDGRAVVKPARQGSSFGLSVVQERAQLGGAVLGAMSYD--DRVLLERYV 182

Query: 173 DGIELTCGVMGDAS----LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
            G EL   V+G +     L V EI +   ++YS++  Y  +  + V  A +P  +   V+
Sbjct: 183 PGRELAVTVLGRSDAPEPLPVVEIVMASEEYYSFQAHY-EIGQSEVRLAGLPDAVDAHVR 241

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
            +A  A+ A GCR  +R D   +    + + LEIN  PG+T     P  A +AG +F +L
Sbjct: 242 AIAAEAYSAAGCRDFARVDIRLE--GDEPWVLEINTIPGLTETGPTPLAAEHAGLTFAQL 299

Query: 289 L 289
           +
Sbjct: 300 I 300


>gi|228933903|ref|ZP_04096747.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228825779|gb|EEM71568.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
          Length = 304

 Score =  144 bits (364), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 92/305 (30%), Positives = 165/305 (54%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGG+SSE++VS+ +G    + L+   +++  I ++  + L+      D A   LHG
Sbjct: 3   IGVIMGGVSSEKQVSIMTGNEMIAHLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---FT 117
            +GEDG VQ  LE L IPY+ S +L+S + MDK  SK+++   G+     I + +     
Sbjct: 63  KYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNISKKILRYEGIETPDWIELTKMEDLN 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGI-IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
           +D    +  P V+KP  GGSS+G+ IV  KD+ I + L     W+   +++IE+Y+ G E
Sbjct: 123 LDELDKLGFPLVVKPNSGGSSVGVKIVYNKDELISM-LETVFEWDS--EVVIEKYIKGEE 179

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +TC +     L +  I    ++F+ Y  KY   ++   +  ++P ++ + V + +   ++
Sbjct: 180 ITCSIFDGKQLPIISIR-HAAEFFDYNAKYDDASTIEEV-IELPAELKERVNKASLACYK 237

Query: 237 AIGCRGISRSDFLF-DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           A+ C   +R D +  D +    + +E+N  PGMT  S+ P+ A  AG  + +LL  ++E 
Sbjct: 238 ALKCSVYARVDMMVKDGIP---YVMEVNTLPGMTQASLLPKSADAAGIHYSKLLDMIIET 294

Query: 296 ASCLR 300
           +  +R
Sbjct: 295 SLRVR 299


>gi|239944584|ref|ZP_04696521.1| D-alanyl-alanine synthetase A [Streptomyces roseosporus NRRL 15998]
          Length = 367

 Score =  144 bits (364), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 95/262 (36%), Positives = 136/262 (51%), Gaps = 21/262 (8%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+ F VLHG +GEDG +Q +LEL  +PY  +G+LASA+  DK   K+V  S G+PV P  
Sbjct: 102 DVVFPVLHGPYGEDGTLQGLLELSGVPYVGAGVLASAVGQDKEYMKRVFISYGLPVGPYE 161

Query: 112 LVNRFTMDSQHLISP------------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
           +V     D+    +             P  IKP +GGSS+GI   K D    LD     +
Sbjct: 162 VVRPREWDNDPAAARKRIVDFAGEHGWPLFIKPARGGSSMGI--TKVDDLSGLDAAIEEA 219

Query: 160 WNHGDQLLIEQYVDGIELTCGVMG-----DASLDVTEIAVPKSDFYSYELKYSSLNSTHV 214
             H  + L+E  + G E+ CGV+       AS+      V   DFY +E KY   ++T +
Sbjct: 220 RRHDPKFLVESLLRGREIECGVLEFEDGPRASVPAEIPPVTAHDFYDFEAKYID-SATGL 278

Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274
           +PA +  +   EVQRLA  A  A+ C G+ R+DF        V   EIN  PG TP+S++
Sbjct: 279 VPAPLTGEQTAEVQRLAVAAFDAVSCEGLVRADFFLTEDGTFVI-NEINTLPGFTPISMY 337

Query: 275 PEMAAYAGYSFRELLLWMVEDA 296
           P M   +G S+ EL+  +++ A
Sbjct: 338 PRMWQESGVSYPELVDRLIQAA 359


>gi|331007263|ref|ZP_08330466.1| D-alanine-D-alanine ligase [gamma proteobacterium IMCC1989]
 gi|330418912|gb|EGG93375.1| D-alanine-D-alanine ligase [gamma proteobacterium IMCC1989]
          Length = 307

 Score =  144 bits (364), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 95/291 (32%), Positives = 153/291 (52%), Gaps = 6/291 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VL GG+S+ER+VSL SG A   AL   G     ID+  +V   +     D AF VLHG
Sbjct: 12  VGVLFGGLSAERDVSLESGHAVFEALLTLGVDAVAIDLQDNVVDQITQANIDAAFIVLHG 71

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--M 118
             GEDG +QA+L+++ IPYT S   +SAL+M+K+ SKQ+    GV     I+++  T  +
Sbjct: 72  GIGEDGRLQALLDIMNIPYTGSDTQSSALAMNKLLSKQLWQGVGVSTSSFIVLDESTDFV 131

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           ++   +    ++KP   GSS+G+      + +      +  ++    +L E+ + G E T
Sbjct: 132 EAIAQLGGSAMVKPAHEGSSIGMGFAHSPEELGAAYAHAKKYDA--IVLAEKVLVGDEYT 189

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             ++    L + ++   +  FY Y+ KY + ++ ++ P  + L+  +EV  LA  A  ++
Sbjct: 190 VAILNGQVLPIIKLETDRV-FYDYDAKYIANDTRYICPCGLSLEEEQEVNALALSAFSSL 248

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
            C G  R D + D  +     LE+N  PGMT  S+ P  A  AGYSF  L+
Sbjct: 249 QCEGWGRVDIMRDE-NGGFHVLEVNTVPGMTSHSLVPMAAKAAGYSFERLV 298


>gi|225571398|ref|ZP_03780394.1| hypothetical protein CLOHYLEM_07496 [Clostridium hylemonae DSM
           15053]
 gi|225159874|gb|EEG72493.1| hypothetical protein CLOHYLEM_07496 [Clostridium hylemonae DSM
           15053]
          Length = 354

 Score =  144 bits (364), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 105/351 (29%), Positives = 166/351 (47%), Gaps = 55/351 (15%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------DR--------SVGLVL 46
           VL GG+S ER+VSL SG      L + G K   +DV        D+          GL +
Sbjct: 5   VLAGGLSPERDVSLISGAGICRTLRERGHKAFLLDVYLGLPYDSDKLNEVFDLPDAGLEI 64

Query: 47  A-----------------------HLKP---------DLAFNVLHGNFGEDGLVQAILEL 74
           A                       +L P         D+ F  LHG+ GE+G +QA  ++
Sbjct: 65  ASGIKTTAPDIEAVRASRPDQSECYLGPNVVELCRLADITFMGLHGSVGENGKMQATFDV 124

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---QHLISPPYVIK 131
           L I YT    L  A+SM+K+ +KQV     VP      +   T ++   +     P V+K
Sbjct: 125 LGIKYTGPNSLGCAMSMNKLVAKQVFKMTRVPTPRGTSLTEETKNTPLDELGYYLPLVVK 184

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSSLG+ +   ++     + +S   +H D+++IE ++ G E  CG++   +L + E
Sbjct: 185 PCSSGSSLGVYICHTEEDYKEAVRRSFDEDHQDEVVIEPFIKGREYACGILAGKALPLVE 244

Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLD--IYKEVQRLAFLAHQAIGCRGISRSDFL 249
           I +P+ + +SYE KY    +T + P  + LD    K++QR    A  A+     +R+DF+
Sbjct: 245 I-IPRDEVFSYENKYQDGGATEICPP-VSLDAKTMKKIQRAGEKAFDALRMDVYARADFI 302

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
            D    + + LE+N  PGMTP S+ P  A  AG  + EL   ++E++  +R
Sbjct: 303 VDETDGRFYCLEMNGLPGMTPTSLLPRAALNAGMDYGELCEKIIEESMKVR 353


>gi|313680822|ref|YP_004058561.1| d-alanine--d-alanine ligase [Oceanithermus profundus DSM 14977]
 gi|313153537|gb|ADR37388.1| D-alanine--D-alanine ligase [Oceanithermus profundus DSM 14977]
          Length = 323

 Score =  144 bits (363), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 95/316 (30%), Positives = 167/316 (52%), Gaps = 28/316 (8%)

Query: 3   VLMGGISSEREVSLSSGKACASAL----------EDAGFKVSQIDVDR-SVGLVLAHLKP 51
           ++ GG S E EVSL S +    AL          +D  + + ++ +D    G       P
Sbjct: 8   LVAGGRSGEHEVSLQSAQGVLEALPFDADPAVIAKDGRWLLGRLALDAIEAGRAPRGDHP 67

Query: 52  ----------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
                     D+ F +LHG +GEDG +Q   E+L +PY  + + ASA+ MDK  SK++++
Sbjct: 68  FPPPVAWRDYDVVFPLLHGRWGEDGTIQGFFEMLGVPYVGADVTASAVCMDKDLSKRILA 127

Query: 102 SCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN 161
             G+PV P  ++ +       L  PP+ +KP + GSS+GI  +++   +   L    ++ 
Sbjct: 128 QAGLPVVPWEVLRKGEPVFVGL-EPPFFVKPARAGSSVGIAKVRRYAELRPAL--DEAFR 184

Query: 162 HGDQLLIEQYVDGI-ELTCGVMGDASLDVTEIAVPK--SDFYSYELKYSSLNSTHVLPAK 218
           H D+++IEQ V G+ EL   ++G+   + + +   +  ++FY Y  KY++  +   +PA 
Sbjct: 185 HDDKVVIEQAVPGVRELEVALLGNVEAEASVVGEVRYQAEFYDYATKYTAGAAELDIPAA 244

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278
           +     + VQ +A  A++ +G RG++R DF F   S +++  E+N  PG TP S++P++ 
Sbjct: 245 LDPGTQETVQEMAVRAYRVLGVRGMARVDF-FLAESGEIYLNELNTIPGFTPFSMYPKLW 303

Query: 279 AYAGYSFRELLLWMVE 294
             +G  + ELL  +VE
Sbjct: 304 QASGLPYPELLTRLVE 319


>gi|196032003|ref|ZP_03099417.1| D-alanine--D-alanine ligase [Bacillus cereus W]
 gi|218903743|ref|YP_002451577.1| D-alanine--D-alanine ligase [Bacillus cereus AH820]
 gi|229122147|ref|ZP_04251362.1| D-alanine--D-alanine ligase [Bacillus cereus 95/8201]
 gi|195994754|gb|EDX58708.1| D-alanine--D-alanine ligase [Bacillus cereus W]
 gi|218538757|gb|ACK91155.1| D-alanine--D-alanine ligase [Bacillus cereus AH820]
 gi|228661273|gb|EEL16898.1| D-alanine--D-alanine ligase [Bacillus cereus 95/8201]
          Length = 304

 Score =  144 bits (363), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 92/305 (30%), Positives = 164/305 (53%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGG+SSE++VS+ +G    + L+   +++  I ++  + L+      D A   LHG
Sbjct: 3   IGVIMGGVSSEKQVSIMTGNEMIANLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---FT 117
            +GEDG VQ  LE L IPY+ S +L+S + MDK  SK+++   G+     I + +     
Sbjct: 63  KYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNISKKILRYEGIETPDWIELTKMEDLN 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGI-IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
            D    +  P V+KP  GGSS+G+ IV  KD+ I + L     W+   +++IE+Y+ G E
Sbjct: 123 FDELDKLGFPLVVKPNSGGSSVGVKIVYNKDELISM-LETVFEWDS--EVVIEKYIKGEE 179

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +TC +     L +  I    ++F+ Y  KY   ++   +  ++P ++ + V + +   ++
Sbjct: 180 ITCSIFDGKQLPIISIR-HAAEFFDYNAKYDDASTIEEV-IELPAELKERVNKASLACYK 237

Query: 237 AIGCRGISRSDFLF-DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           A+ C   +R D +  D +    + +E+N  PGMT  S+ P+ A  AG  + +LL  ++E 
Sbjct: 238 ALKCSVYARVDMMVKDGIP---YVMEVNTLPGMTQASLLPKSADAAGIHYSKLLDMIIET 294

Query: 296 ASCLR 300
           +  +R
Sbjct: 295 SLRVR 299


>gi|52142884|ref|YP_083945.1| D-alanine--D-alanine ligase [Bacillus cereus E33L]
 gi|51976353|gb|AAU17903.1| D-alanine--D-alanine ligase [Bacillus cereus E33L]
          Length = 304

 Score =  144 bits (363), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 92/305 (30%), Positives = 163/305 (53%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGG+SSE++VS+ +G    + L+   +++  I ++  + L+      D A   LHG
Sbjct: 3   IGVIMGGVSSEKQVSIMTGNEMIAHLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---FT 117
            +GEDG VQ  LE L IPY+ S +L+S + MDK  SK+++   G+     I + +     
Sbjct: 63  KYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNMSKKILRYEGIETPDWIELTKMEDLN 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGI-IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
            D    +  P V+KP  GGSS+G+ IV  KD+ I + L     W+   +++IE+Y+ G E
Sbjct: 123 FDELDKLGFPLVVKPNSGGSSVGVKIVYDKDELISM-LETVFEWDS--EVVIEKYIKGDE 179

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +TC +     L +  I    ++F+ Y  KY    +   +  ++P ++ + V + +   ++
Sbjct: 180 ITCSIFDGKQLPIISIR-HAAEFFDYNAKYDDAGTIEEV-IELPAELKERVNKASLACYK 237

Query: 237 AIGCRGISRSDFLF-DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           A+ C   +R D +  D +    + +E+N  PGMT  S+ P+ A  AG  + +LL  ++E 
Sbjct: 238 ALKCSVYARVDMMVKDGIP---YVMEVNTLPGMTQASLLPKSADAAGIHYSKLLDMIIET 294

Query: 296 ASCLR 300
           +  +R
Sbjct: 295 SLRVR 299


>gi|196040387|ref|ZP_03107688.1| D-alanine--D-alanine ligase [Bacillus cereus NVH0597-99]
 gi|196028872|gb|EDX67478.1| D-alanine--D-alanine ligase [Bacillus cereus NVH0597-99]
          Length = 304

 Score =  144 bits (363), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 92/305 (30%), Positives = 164/305 (53%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGG+SSE++VS+ +G    + L+   +++  I ++  + L+      D A   LHG
Sbjct: 3   VGVIMGGVSSEKQVSIMTGNEMIAHLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---FT 117
            +GEDG VQ  LE L IPY+ S +L+S + MDK  SK+++   G+     I + +     
Sbjct: 63  KYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNISKKILRYEGIETPDWIELTKMEDLN 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGI-IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
           +D    +  P V+KP  GGSS+G+ IV  KD+ I + L     W+   +++IE+Y+ G E
Sbjct: 123 LDELDKLGFPLVVKPNSGGSSVGVKIVYDKDELISM-LETVFEWDS--EVVIERYIKGDE 179

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +TC +     L +  I    ++F+ Y  KY    +   +  ++P ++ + V + +   ++
Sbjct: 180 ITCSIFDGKQLPIISIR-HAAEFFDYNAKYDDAGTIEEV-IELPAELKERVNKASLACYK 237

Query: 237 AIGCRGISRSDFLF-DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           A+ C   +R D +  D +    + +E+N  PGMT  S+ P+ A  AG  + +LL  ++E 
Sbjct: 238 ALKCSVYARVDMMVKDGIP---YVMEVNTLPGMTQASLLPKSAEAAGIHYSKLLDMIIET 294

Query: 296 ASCLR 300
           +  +R
Sbjct: 295 SLRVR 299


>gi|288923495|ref|ZP_06417614.1| D-alanine/D-alanine ligase [Frankia sp. EUN1f]
 gi|288345153|gb|EFC79563.1| D-alanine/D-alanine ligase [Frankia sp. EUN1f]
          Length = 390

 Score =  144 bits (363), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 82/253 (32%), Positives = 139/253 (54%), Gaps = 13/253 (5%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+ F +LHG FGEDG +Q +L++  +PY  SG+ ASA +MDK   K+++++ G+PV P  
Sbjct: 131 DVVFPLLHGPFGEDGTIQGLLDMSGLPYVGSGVFASATAMDKQHMKRILAASGLPVGPYT 190

Query: 112 LV---NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168
           +V      +   + L+  P  +KP +GGSS+GI   + D    LD    ++ +   ++L+
Sbjct: 191 VVRPGQTLSETERELLGLPVFVKPARGGSSIGI--SRVDAWADLDTAFKAARSSDPKVLV 248

Query: 169 EQYVDGIELTCGVMGDASLDVTEIAVP-------KSDFYSYELKYSSLNSTHVLPAKIPL 221
           E  + G E+ CGV+        E +VP        + FY +E KY S  +   +PA++P 
Sbjct: 249 EAAIVGREIECGVLDRLDGSGPEASVPAEITVTSSAGFYDFEAKYVSDGARLDVPAQLPH 308

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYA 281
           ++ + V+  A  A++A+ C G++R D    P +  +   E+N  PG T  S+FP++ A +
Sbjct: 309 ELTERVRATATAAYEALDCAGLARVDMFVTP-AGDIVLNEVNTMPGFTSTSMFPQVWAAS 367

Query: 282 GYSFRELLLWMVE 294
           G  F  L   +V+
Sbjct: 368 GLDFAALTDRLVQ 380


>gi|254967027|gb|ACT97549.1| putative D-alanine-D-alanine ligase [uncultured organism]
          Length = 343

 Score =  144 bits (363), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 107/337 (31%), Positives = 158/337 (46%), Gaps = 46/337 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------------DRSVGLV 45
           + VL GG S ER+VSL SG   A++L  +G  V+  DV               D +    
Sbjct: 7   ITVLAGGFSPERDVSLLSGALIANSLCRSGHLVALTDVFYPYRGALSDDAFTSDGNFMYT 66

Query: 46  LAHLKPDL--------------------------AFNVLHGNFGEDGLVQAILELLEIPY 79
           +    PDL                           F  LHG  GEDG +QA L  + IPY
Sbjct: 67  VPKEPPDLKALRAEVPGSALIGDGVLELCRLSDIVFLALHGGMGEDGSIQAALSSMGIPY 126

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSL 139
           T S   A  ++MDK  SK +  + G+P     L+ +   DS   I  P V+KP   GSS+
Sbjct: 127 TGSDFAACLVAMDKSLSKLLFRAHGIPTADFTLLKK--GDSTDGIPLPCVVKPCSCGSSV 184

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDF 199
           G+ ++   +++   L   +++ + +++L E  + G E + GV+   +L   EI  PK  F
Sbjct: 185 GVSIVDTKEALAGAL--ETAYQYEEKVLAEDKICGREFSVGVLLGRALPAIEIR-PKDGF 241

Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
           Y YE KY S  +  + PA +P      +  LA   H+A+G    SR DF+ +  + K   
Sbjct: 242 YDYERKYQSGMTEEICPADLPEAEAASLGALALKVHRALGLGSYSRIDFIREEKTGKFIC 301

Query: 260 LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           LE N  PGMTP+S+ P+ AA AG  +  L L + + A
Sbjct: 302 LEANTLPGMTPMSLLPQEAAAAGIGYDALCLAIAQAA 338


>gi|239991046|ref|ZP_04711710.1| D-alanyl-alanine synthetase A [Streptomyces roseosporus NRRL 11379]
 gi|291448047|ref|ZP_06587437.1| D-alanyl-alanine synthetase A [Streptomyces roseosporus NRRL 15998]
 gi|291350994|gb|EFE77898.1| D-alanyl-alanine synthetase A [Streptomyces roseosporus NRRL 15998]
          Length = 391

 Score =  144 bits (363), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 95/262 (36%), Positives = 136/262 (51%), Gaps = 21/262 (8%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+ F VLHG +GEDG +Q +LEL  +PY  +G+LASA+  DK   K+V  S G+PV P  
Sbjct: 126 DVVFPVLHGPYGEDGTLQGLLELSGVPYVGAGVLASAVGQDKEYMKRVFISYGLPVGPYE 185

Query: 112 LVNRFTMDSQHLISP------------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
           +V     D+    +             P  IKP +GGSS+GI   K D    LD     +
Sbjct: 186 VVRPREWDNDPAAARKRIVDFAGEHGWPLFIKPARGGSSMGI--TKVDDLSGLDAAIEEA 243

Query: 160 WNHGDQLLIEQYVDGIELTCGVM-----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHV 214
             H  + L+E  + G E+ CGV+       AS+      V   DFY +E KY   ++T +
Sbjct: 244 RRHDPKFLVESLLRGREIECGVLEFEDGPRASVPAEIPPVTAHDFYDFEAKYID-SATGL 302

Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274
           +PA +  +   EVQRLA  A  A+ C G+ R+DF        V   EIN  PG TP+S++
Sbjct: 303 VPAPLTGEQTAEVQRLAVAAFDAVSCEGLVRADFFLTEDGTFVI-NEINTLPGFTPISMY 361

Query: 275 PEMAAYAGYSFRELLLWMVEDA 296
           P M   +G S+ EL+  +++ A
Sbjct: 362 PRMWQESGVSYPELVDRLIQAA 383


>gi|254966991|gb|ACT97530.1| putative D-alanyl-alanine synthetase A [uncultured organism]
          Length = 337

 Score =  144 bits (363), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 98/315 (31%), Positives = 157/315 (49%), Gaps = 35/315 (11%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKV-----------------SQIDVDRSVG 43
           +A++ GG SSE +VS+ S +   S ++   + +                 S+  +DR+  
Sbjct: 5   IAIVAGGDSSEHDVSMRSAEGIYSFIDKDKYTLYIVELTKEKWEALLPDGSRAQIDRN-D 63

Query: 44  LVLAH----LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
              +H    +KPD A+  +HG  GE+G++Q   ELL IPY+   +L SA++  K    Q 
Sbjct: 64  FSFSHDGQKVKPDFAYITIHGTPGENGILQGYFELLGIPYSTCDVLVSAMTFSKFTLNQY 123

Query: 100 VSSCGVPVCPSILVNRF----TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
           +   GV V  S+LVN+       D    I  P  IKP   GSS G+  +K  + I   L 
Sbjct: 124 LKGFGVRVAESMLVNKHHGISNEDVIEKIGLPCFIKPNASGSSFGVTKVKTAEQIQPAL- 182

Query: 156 QSSSWNHGDQLLIEQYVDGIELT--CGVMGDAS--LDVTEIAVPKSDFYSYELKYSSLNS 211
              ++   D ++IE ++DGIEL   C    D S    +TE+ V K++F+ Y  KY+    
Sbjct: 183 -EKAFAESDDVMIEAFMDGIELANGCYKTKDKSVVFPITEV-VSKNEFFDYNAKYNG-EV 239

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271
           T + PA++  ++   VQ+L    +  +GC+GI R D++      K+  LEIN  PGMT  
Sbjct: 240 TEITPARLSPELTDRVQKLTSAVYDILGCKGIVRVDYIITE-GEKINMLEINTTPGMTAT 298

Query: 272 SIFPEMAAYAGYSFR 286
           S  P+  + + Y ++
Sbjct: 299 SFIPQPGSCSRYRYQ 313


>gi|125974439|ref|YP_001038349.1| D-alanine--D-alanine ligase [Clostridium thermocellum ATCC 27405]
 gi|190359126|sp|A3DGS7|DDL_CLOTH RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|125714664|gb|ABN53156.1| D-alanine--D-alanine ligase [Clostridium thermocellum ATCC 27405]
          Length = 376

 Score =  144 bits (363), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 81/257 (31%), Positives = 139/257 (54%), Gaps = 15/257 (5%)

Query: 50  KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109
           K D+ F VLHG  GEDG +Q + EL  IPY   G+LASA+ MDK+ +K +    G+P   
Sbjct: 108 KIDVVFPVLHGCNGEDGTIQGLFELAGIPYVGCGVLASAVGMDKIYAKIIFEKAGIPQAD 167

Query: 110 SILVNRFTMDS---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160
            +   R  +           +   S P  +KP   GSS+G+        +   L+ ++ +
Sbjct: 168 YLYFTRKEIYGDVEGVVDKIEEKFSYPVFVKPSNAGSSVGVSKAHDKNELKEALIYAARY 227

Query: 161 NHGDQLLIEQYVDGIELTCGVMGD---ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
           +   ++LIE++++G E+ C V+G+    +  V EI +P ++FY Y+ KY    S   +PA
Sbjct: 228 DR--KVLIEEFINGREVECAVLGNDDPVASTVGEI-IPGNEFYDYKAKYIENTSKIKIPA 284

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
            +P +  ++++  A  A +A+ C G++R DF     + KV+  EIN  PG T +S++P +
Sbjct: 285 DLPEETVEQIRNYAVKAFKALDCSGLARVDFFVHKETGKVYINEINTMPGFTSISMYPML 344

Query: 278 AAYAGYSFRELLLWMVE 294
              +G S+ EL+  +++
Sbjct: 345 WEESGISYPELIEKLID 361


>gi|269118899|ref|YP_003307076.1| D-alanine/D-alanine ligase [Sebaldella termitidis ATCC 33386]
 gi|268612777|gb|ACZ07145.1| D-alanine/D-alanine ligase [Sebaldella termitidis ATCC 33386]
          Length = 305

 Score =  144 bits (363), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 98/299 (32%), Positives = 154/299 (51%), Gaps = 11/299 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+ GGISSEREVSL SG+     L    + V  I ++    +  +    D  F  LHG
Sbjct: 6   IGVVRGGISSEREVSLKSGEGIIRELNKDKYDVKDIVLNDKNDIFTSLDGVDFVFLGLHG 65

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118
            FGEDG +QAILE ++IPYT  G+LAS+L MDK  +K ++ S GV     I V       
Sbjct: 66  KFGEDGKIQAILETMDIPYTGCGVLASSLCMDKDITKHIMRSYGVRTAKWISVREGEECD 125

Query: 119 --DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
             ++   +    + KP  GGSS+G+  IK +Q     L    + +   +++IE+ + G+E
Sbjct: 126 YSEAAAYLGEDIIAKPNSGGSSVGVHFIKNEQEFYEALKDIFTIDK--EVMIEEVLRGVE 183

Query: 177 LTCGVMGDASLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
           ++  ++ D  +  T    PK+  F+ Y  KY    +   +  +   ++  E+  L   A+
Sbjct: 184 ISVPII-DGKVYPTLCIEPKAGTFFDYASKYEVGGADEYV-VEFEKELQDEINELTKTAY 241

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            A+ C G +R DF+      K + +EIN  PGMT  S+ P+   + G S+ ELL  ++E
Sbjct: 242 HAVKCEGYARIDFMLK--DNKPYLMEINTLPGMTMTSLVPKSLKHLGVSYSELLDKLIE 298


>gi|281418964|ref|ZP_06249982.1| D-alanine/D-alanine ligase [Clostridium thermocellum JW20]
 gi|281407421|gb|EFB37681.1| D-alanine/D-alanine ligase [Clostridium thermocellum JW20]
          Length = 376

 Score =  144 bits (362), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 82/257 (31%), Positives = 142/257 (55%), Gaps = 15/257 (5%)

Query: 50  KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109
           K D+ F VLHG  GEDG +Q + EL  IPY   G+LASA+ MDK+ +K +    G+P   
Sbjct: 108 KIDVVFPVLHGCNGEDGTIQGLFELAGIPYVGCGVLASAVGMDKIYAKIIFEKAGIPQAD 167

Query: 110 SILVNRFTM--DSQHLI-------SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160
            +   R  +  D + ++       S P  +KP   GSS+G+        +   L+ ++ +
Sbjct: 168 YLYFTRKEIYGDVEGVVDKIEEKFSYPVFVKPSNAGSSVGVSKAHDKNELKEALIYAARY 227

Query: 161 NHGDQLLIEQYVDGIELTCGVMGD---ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
           +   ++LIE++++G E+ C V+G+    +  V EI +P ++FY Y+ KY    S   +PA
Sbjct: 228 DR--KVLIEEFINGREVECAVLGNDAPVASTVGEI-IPGNEFYDYKAKYIDNTSKIKIPA 284

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
            +P +  ++++  A  A +A+ C G++R DF     + KV+  EIN  PG T +S++P +
Sbjct: 285 DLPEETVEQIRNYAVKAFKALDCSGLARVDFFVHKETGKVYINEINTMPGFTSISMYPML 344

Query: 278 AAYAGYSFRELLLWMVE 294
              +G S+ EL+  +++
Sbjct: 345 WEESGISYPELIEKLID 361


>gi|300866881|ref|ZP_07111556.1| D-alanine--D-alanine ligase [Oscillatoria sp. PCC 6506]
 gi|300335131|emb|CBN56718.1| D-alanine--D-alanine ligase [Oscillatoria sp. PCC 6506]
          Length = 368

 Score =  144 bits (362), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 91/259 (35%), Positives = 142/259 (54%), Gaps = 20/259 (7%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+ F VLHG  GEDG VQ +L+L+++P+  SG+L SA+ MDK+  K V +  G+P     
Sbjct: 104 DVWFPVLHGPNGEDGTVQGLLKLMQVPFVGSGVLGSAMGMDKIAMKMVFAQAGLPQVKYT 163

Query: 112 LVNRFTMDSQHLISP------------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
            V R  + S   I P            P  +KP   GSS+GI  ++    +   L  ++S
Sbjct: 164 AVTRSQVWSNPCIFPKLCDQIEENLGYPCFVKPANLGSSVGISKVRSRPELETALDSAAS 223

Query: 160 WNHGDQLLIEQYVDGIELTCGVMGD----ASLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215
           ++   ++++E  V   EL C V+G+    AS+ V EI   KSDFY YE KY+   +   +
Sbjct: 224 YDR--RIIVEAGVVARELECAVLGNDRPQASI-VGEITY-KSDFYDYETKYAHGQADLFI 279

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275
           PAK+   I  ++Q +A  A  A+ C G++R DF +   + +V   EIN  PG T  S++P
Sbjct: 280 PAKVSDAIASQIQSMAIEAFLALDCAGLARVDFFYVESTGQVLINEINTLPGFTATSMYP 339

Query: 276 EMAAYAGYSFRELLLWMVE 294
           ++ A +G SF EL+  +++
Sbjct: 340 QLWAASGISFAELVDRLIQ 358


>gi|256005208|ref|ZP_05430176.1| D-alanine/D-alanine ligase [Clostridium thermocellum DSM 2360]
 gi|255990862|gb|EEU00976.1| D-alanine/D-alanine ligase [Clostridium thermocellum DSM 2360]
 gi|316941575|gb|ADU75609.1| D-alanine/D-alanine ligase [Clostridium thermocellum DSM 1313]
          Length = 376

 Score =  144 bits (362), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 82/257 (31%), Positives = 142/257 (55%), Gaps = 15/257 (5%)

Query: 50  KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109
           K D+ F VLHG  GEDG +Q + EL  IPY   G+LASA+ MDK+ +K +    G+P   
Sbjct: 108 KIDVVFPVLHGCNGEDGTIQGLFELAGIPYVGCGVLASAVGMDKIYAKIIFEKAGIPQAD 167

Query: 110 SILVNRFTM--DSQHLI-------SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160
            +   R  +  D + ++       S P  +KP   GSS+G+        +   L+ ++ +
Sbjct: 168 YLYFTRKEIYGDVEGVVDKIEEKFSYPVFVKPSNAGSSVGVSKAHDKNELKEALIYAARY 227

Query: 161 NHGDQLLIEQYVDGIELTCGVMGD---ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
           +   ++LIE++++G E+ C V+G+    +  V EI +P ++FY Y+ KY    S   +PA
Sbjct: 228 DR--KVLIEEFINGREVECAVLGNDDPVASTVGEI-IPGNEFYDYKAKYIDNTSKIKIPA 284

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
            +P +  ++++  A  A +A+ C G++R DF     + KV+  EIN  PG T +S++P +
Sbjct: 285 DLPEETVEQIRNYAVKAFKALDCSGLARVDFFVHKETGKVYINEINTMPGFTSISMYPML 344

Query: 278 AAYAGYSFRELLLWMVE 294
              +G S+ EL+  +++
Sbjct: 345 WEESGISYPELIEKLID 361


>gi|30262595|ref|NP_844972.1| D-alanine--D-alanine ligase [Bacillus anthracis str. Ames]
 gi|47527903|ref|YP_019252.1| D-alanine--D-alanine ligase [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49185443|ref|YP_028695.1| D-alanine--D-alanine ligase [Bacillus anthracis str. Sterne]
 gi|165869190|ref|ZP_02213850.1| D-alanine--D-alanine ligase [Bacillus anthracis str. A0488]
 gi|167637851|ref|ZP_02396130.1| D-alanine--D-alanine ligase [Bacillus anthracis str. A0193]
 gi|170685118|ref|ZP_02876342.1| D-alanine--D-alanine ligase [Bacillus anthracis str. A0465]
 gi|170704705|ref|ZP_02895171.1| D-alanine--D-alanine ligase [Bacillus anthracis str. A0389]
 gi|177649494|ref|ZP_02932496.1| D-alanine--D-alanine ligase [Bacillus anthracis str. A0174]
 gi|190565429|ref|ZP_03018349.1| D-alanine--D-alanine ligase [Bacillus anthracis Tsiankovskii-I]
 gi|227814575|ref|YP_002814584.1| D-alanine--D-alanine ligase [Bacillus anthracis str. CDC 684]
 gi|229604698|ref|YP_002866914.1| D-alanine--D-alanine ligase [Bacillus anthracis str. A0248]
 gi|254685178|ref|ZP_05149038.1| D-alanine--D-alanine ligase [Bacillus anthracis str. CNEVA-9066]
 gi|254722585|ref|ZP_05184373.1| D-alanine--D-alanine ligase [Bacillus anthracis str. A1055]
 gi|254737629|ref|ZP_05195332.1| D-alanine--D-alanine ligase [Bacillus anthracis str. Western North
           America USA6153]
 gi|254751944|ref|ZP_05203981.1| D-alanine--D-alanine ligase [Bacillus anthracis str. Vollum]
 gi|254760465|ref|ZP_05212489.1| D-alanine--D-alanine ligase [Bacillus anthracis str. Australia 94]
 gi|39930865|sp|Q81Q29|DDL_BACAN RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|254767719|sp|C3PB71|DDL_BACAA RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|254767720|sp|C3LHM9|DDL_BACAC RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|30257227|gb|AAP26458.1| D-alanine--D-alanine ligase [Bacillus anthracis str. Ames]
 gi|47503051|gb|AAT31727.1| D-alanine--D-alanine ligase [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49179370|gb|AAT54746.1| D-alanine--D-alanine ligase [Bacillus anthracis str. Sterne]
 gi|164715916|gb|EDR21433.1| D-alanine--D-alanine ligase [Bacillus anthracis str. A0488]
 gi|167514400|gb|EDR89767.1| D-alanine--D-alanine ligase [Bacillus anthracis str. A0193]
 gi|170130506|gb|EDS99367.1| D-alanine--D-alanine ligase [Bacillus anthracis str. A0389]
 gi|170670478|gb|EDT21217.1| D-alanine--D-alanine ligase [Bacillus anthracis str. A0465]
 gi|172084568|gb|EDT69626.1| D-alanine--D-alanine ligase [Bacillus anthracis str. A0174]
 gi|190563456|gb|EDV17421.1| D-alanine--D-alanine ligase [Bacillus anthracis Tsiankovskii-I]
 gi|227002556|gb|ACP12299.1| D-alanine--D-alanine ligase [Bacillus anthracis str. CDC 684]
 gi|229269106|gb|ACQ50743.1| D-alanine--D-alanine ligase [Bacillus anthracis str. A0248]
          Length = 304

 Score =  144 bits (362), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 92/305 (30%), Positives = 164/305 (53%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGG+SSE++VS+ +G    + L+   +++  I ++  + L+      D A   LHG
Sbjct: 3   IGVIMGGVSSEKQVSIMTGNEMIANLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---FT 117
            +GEDG VQ  LE L IPY+ S +L+S + MDK  SK+++   G+     I + +     
Sbjct: 63  KYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNISKKILRYEGIETPDWIELTKMEDLN 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGI-IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
            D    +  P V+KP  GGSS+G+ IV  KD+ I + L     W+   +++IE+Y+ G E
Sbjct: 123 FDELDKLGFPLVVKPNSGGSSVGVKIVYDKDELISM-LETVFEWDS--EVVIEKYIKGEE 179

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +TC +     L +  I    ++F+ Y  KY   ++   +  ++P ++ + V + +   ++
Sbjct: 180 ITCSIFDGKQLPIISIR-HAAEFFDYNAKYDDASTIEEV-IELPAELKERVNKASLACYK 237

Query: 237 AIGCRGISRSDFLF-DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           A+ C   +R D +  D +    + +E+N  PGMT  S+ P+ A  AG  + +LL  ++E 
Sbjct: 238 ALKCSVYARVDMMVKDGIP---YVMEVNTLPGMTQASLLPKSADAAGIHYSKLLDMIIET 294

Query: 296 ASCLR 300
           +  +R
Sbjct: 295 SLRVR 299


>gi|324326581|gb|ADY21841.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 311

 Score =  144 bits (362), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 92/305 (30%), Positives = 164/305 (53%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGG+SSE++VS+ +G    + L+   +++  I ++  + L+      D A   LHG
Sbjct: 10  VGVIMGGVSSEKQVSIMTGNEMIANLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 69

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---FT 117
            +GEDG VQ  LE L IPY+ S +L+S + MDK  SK+++   G+     I + +     
Sbjct: 70  KYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNISKKILRYEGIETPDWIELTKMEDLN 129

Query: 118 MDSQHLISPPYVIKPLKGGSSLGI-IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
           +D    +  P V+KP  GGSS+G+ IV  KD+ I + L     W+   +++IE+Y+ G E
Sbjct: 130 VDELDKLGFPLVVKPNSGGSSVGVKIVYDKDELISM-LETVFEWDS--EVVIEKYIKGDE 186

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +TC +     L +  I    ++F+ Y  KY   ++   +  ++P ++ + V + +   ++
Sbjct: 187 ITCSIFDGKQLPIISIR-HAAEFFDYNAKYDDTSTIEEV-IELPAELKERVNKASLACYK 244

Query: 237 AIGCRGISRSDFLF-DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           A+ C   +R D +  D +    + +EIN  PGMT  S+ P+ A   G  + +LL  ++E 
Sbjct: 245 ALKCSVYARVDMMVKDGIP---YVMEINTLPGMTQASLLPKSAEAEGIDYSKLLDMIIET 301

Query: 296 ASCLR 300
           +  +R
Sbjct: 302 SLRVR 306


>gi|332991942|gb|AEF01997.1| D-alanine--D-alanine ligase [Alteromonas sp. SN2]
          Length = 322

 Score =  144 bits (362), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 96/296 (32%), Positives = 152/296 (51%), Gaps = 10/296 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AV+ GG S+ER+VSL+SG A  +AL          D        L   K D    +LHG
Sbjct: 18  VAVMFGGDSAERDVSLNSGNAVLAALLRENVNAIAFDPAERPLTDLISEKVDRVLIMLHG 77

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q  L+LL+IPYT + +L SAL+MDK+ +KQV  S G+P     + ++   ++
Sbjct: 78  RGGEDGSMQGALQLLKIPYTGTPVLGSALAMDKIHTKQVWQSLGLPTAKYEIADKRRFEA 137

Query: 121 ------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
                    +    ++KP + GSS+G+  +   +   L+     ++N+ +Q+L+EQY+ G
Sbjct: 138 GKCSAIMEKLGNEVMVKPAREGSSIGMARVTSAEQ--LENAIQDAFNYDNQVLLEQYIKG 195

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
            E T  V+   +L    ++ P + FY Y  KY    + +  P+ +  +    + +L+  A
Sbjct: 196 PEFTVSVIQGQALPSIRMSTPHT-FYDYAAKYQDDTTEYFCPSGLSDEQEAHLAQLSTQA 254

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +I   G  R D + D      + LE N  PGMT  S+ P+ A  AG SF EL+L
Sbjct: 255 FDSISGSGWGRIDVMQDG-DGHFYLLEANTVPGMTEKSLVPKAAKVAGLSFDELVL 309


>gi|332828689|gb|EGK01381.1| D-alanine-D-alanine ligase [Dysgonomonas gadei ATCC BAA-286]
          Length = 327

 Score =  144 bits (362), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 95/327 (29%), Positives = 162/327 (49%), Gaps = 41/327 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLA------------- 47
           +A++ GG SSE  VS  S     S L+   + + ++ + R    V A             
Sbjct: 5   IAIVWGGYSSEIVVSEKSMSGVYSFLDKEKYNIHKVRIVRESWTVDADGVTYPVDKNDFS 64

Query: 48  --------HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
                   ++K D AF ++HG  GEDG +Q   ++L IPY+  G++AS+L+M+K      
Sbjct: 65  FTYPEKGMNIKFDFAFIIIHGTPGEDGRLQGYFDMLNIPYSTCGMMASSLTMNKFVCNNF 124

Query: 100 VSSCGVPVCPSILVNRFTMDSQHLISP----PYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
           + + G+ V  S+ +N+ T  S   I+     P  +KP  GGSS     +K      ++ L
Sbjct: 125 LKNFGIRVADSLYLNKDTRCSIDDIAAKLGFPMFVKPNTGGSSFATTKVKS-----IEQL 179

Query: 156 QSS---SWNHGDQLLIEQYVDGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSS 208
           Q +   ++    +++IE ++ G E+TCG       +    +TE+  P ++F++YE KY  
Sbjct: 180 QKAIDIAFGETPEVIIESFISGQEVTCGCYKIKGKEVVFPITEVVTP-NEFFNYEAKYEG 238

Query: 209 LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268
                + PA+IP ++  E+QRL    +  +G +GI R DF+        + LE+N  PGM
Sbjct: 239 -QVEEITPARIPDEMTNEIQRLTRRIYDMVGAKGIIRVDFIIS--DNMPYLLEVNTVPGM 295

Query: 269 TPVSIFPEMAAYAGYSFRELLLWMVED 295
           T  S  P+  A AG +  ++L  ++E+
Sbjct: 296 TQTSFIPQQVAAAGLNITDVLTEIIEN 322


>gi|228915195|ref|ZP_04078790.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228844426|gb|EEM89482.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 304

 Score =  144 bits (362), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 91/305 (29%), Positives = 163/305 (53%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGG+SSE++VS+ +G    + L+   +++  I ++  + L+      D A   LHG
Sbjct: 3   IGVIMGGVSSEKQVSIMTGNEMIANLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---FT 117
            +GEDG VQ  LE L IPY+ S +L+S + MDK  SK+++   G+     I + +     
Sbjct: 63  KYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNISKKILRYEGIETPDWIELTKMEDLN 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGI-IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
           +D    +  P V+KP  GGSS+G+ IV  KD+ I + L     W+   +++IE+Y+ G E
Sbjct: 123 LDELDKLGFPLVVKPNSGGSSVGVKIVYNKDELISM-LETVFEWDS--EVVIEKYIKGDE 179

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +TC +     L +  I    ++F+ Y  KY    +   +  ++P ++ + V + +   ++
Sbjct: 180 ITCSIFDGKQLPIISIR-HAAEFFDYNAKYDDAGTIEEV-IELPAELKERVNKASLACYK 237

Query: 237 AIGCRGISRSDFLF-DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           A+ C   +R D +  D +    + +E+N  PGMT  S+ P+ A   G  + +LL  ++E 
Sbjct: 238 ALKCSVYARVDMMVKDGIP---YVMEVNTLPGMTQASLLPKSAEAEGIDYSKLLDMIIET 294

Query: 296 ASCLR 300
           +  +R
Sbjct: 295 SLRVR 299


>gi|300858333|ref|YP_003783316.1| D-alanine-D-alanine ligase [Corynebacterium pseudotuberculosis
           FRC41]
 gi|300685787|gb|ADK28709.1| D-alanine-D-alanine ligase [Corynebacterium pseudotuberculosis
           FRC41]
 gi|302206051|gb|ADL10393.1| D-alanyl-alanine synthetase A [Corynebacterium pseudotuberculosis
           C231]
 gi|302330602|gb|ADL20796.1| D-alanyl-alanine synthetase A [Corynebacterium pseudotuberculosis
           1002]
 gi|308276287|gb|ADO26186.1| D-alanyl-alanine synthetase A [Corynebacterium pseudotuberculosis
           I19]
          Length = 363

 Score =  144 bits (362), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 83/261 (31%), Positives = 140/261 (53%), Gaps = 17/261 (6%)

Query: 48  HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV 107
           + + D+ F  LHG FGEDG +Q + EL  IPY  +G+L+SA  MDK  +K+++++ G+PV
Sbjct: 105 YAQADVIFPALHGRFGEDGTIQGMFELSGIPYVGTGVLSSACGMDKEYTKKLLAAEGLPV 164

Query: 108 CPSILV---NRFTMDSQHLISPPYVIKPLKGGSSLGI-IVIKKDQSIPLDLLQSSSWNHG 163
              +++      T   + ++  P  +KP +GGSS+GI  VI+ D     D   + +  H 
Sbjct: 165 GKEVILRGDETLTESDKQMLGLPVFVKPARGGSSIGISRVIEWDD---FDAALTLAREHD 221

Query: 164 DQLLIEQYVDGIELTCGVM--GDASL------DVTEIAVPKSDFYSYELKYSSLNSTHVL 215
            ++++E  + G+E+ CGV+   D SL       + ++   +  FY ++ KY     T  +
Sbjct: 222 TKVIVEAEIKGVEVECGVLERADGSLIASVPAQLEDVDEGEEGFYGFDTKYLDNIVTATI 281

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275
           PA         +Q L+  A QA+ CRG+SR DF      +     E+N  PG TP+S++P
Sbjct: 282 PAPFDQQTIALIQSLSLEAFQALNCRGLSRVDFFV--TDQGPVLNEVNTMPGFTPISMYP 339

Query: 276 EMAAYAGYSFRELLLWMVEDA 296
           ++    G  + ELL  +++ A
Sbjct: 340 QVFEATGIGYAELLSHLIDQA 360


>gi|118478002|ref|YP_895153.1| D-alanine--D-alanine ligase [Bacillus thuringiensis str. Al Hakam]
 gi|118417227|gb|ABK85646.1| D-alanine--D-alanine ligase [Bacillus thuringiensis str. Al Hakam]
          Length = 311

 Score =  144 bits (362), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 92/305 (30%), Positives = 161/305 (52%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           M V+MGG+SSE++VS+ +G    + L+   +++  I ++  + L+      D A   LHG
Sbjct: 10  MGVIMGGVSSEKQVSIMTGNEMIAHLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 69

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---FT 117
            +GEDG VQ  LE L IPY+ S +L+S + MDK  SK+++   G+     I + +     
Sbjct: 70  KYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNMSKKILRYEGIETPDWIELTKMEDLN 129

Query: 118 MDSQHLISPPYVIKPLKGGSSLGI-IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
            D    +  P V+KP  GGSS+G+ IV  KD+ I   L     W+   +++IE+Y+ G E
Sbjct: 130 FDELDKLGFPLVVKPNSGGSSVGVKIVYDKDELIST-LETVFEWDS--EVVIEKYIKGDE 186

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +TC +     L +  I    ++F+ Y  KY    +   +  ++P ++ + V + +   ++
Sbjct: 187 ITCSIFDGKQLPIISIR-HAAEFFDYNAKYDDAGTIEEV-IELPAELKERVNKASLACYK 244

Query: 237 AIGCRGISRSDFLF-DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           A+ C   +R D +  D +    + +E+N  PGMT  S+ P+ A   G  + +LL  ++E 
Sbjct: 245 ALKCSVYARVDMMVKDGIP---YVMEVNTLPGMTQASLLPKSAEAEGIDYSKLLDMIIET 301

Query: 296 ASCLR 300
           +  +R
Sbjct: 302 SLRVR 306


>gi|260063594|ref|YP_003196674.1| D-alanyl-alanine synthetase A [Robiginitalea biformata HTCC2501]
 gi|88783039|gb|EAR14212.1| D-alanylalanine synthetase [Robiginitalea biformata HTCC2501]
          Length = 329

 Score =  144 bits (362), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 104/324 (32%), Positives = 162/324 (50%), Gaps = 34/324 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALE--------------------DAGFKVSQIDVDR 40
           +AV+MGG SSE E+SL SG+     L+                    D+G +      D 
Sbjct: 7   IAVIMGGYSSEYEISLKSGEVVCKWLDRDQYDPYRILIRRDKWVMLGDSGREYPVSRHDF 66

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           SV L    L+ D  FN +HG  GE+GL+QA  EL+ +P T  G   +A++ +K     ++
Sbjct: 67  SVELEDGTLRFDCVFNAIHGTPGENGLMQAYFELIGMPQTSCGFYQAAVTFNKRDLLGIL 126

Query: 101 SSCGVPVCPSILVNRFTMDSQHLI----SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
            S GVP   S  ++R    +Q  I      P  +K  + GSS G+ +++  ++  L    
Sbjct: 127 KSAGVPAARSYHLDRGQELNQQAILDAVGLPCFVKANRAGSSFGVSLVR--EASGLQAAV 184

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNST 212
            ++    D++LIE  + G E++ GV+        L +TEI V ++DF+ Y+ KY    S 
Sbjct: 185 ENALKEDDEILIEAALQGTEVSVGVIRYQGATRVLPITEI-VSENDFFDYQAKYEG-KSR 242

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
            + PA+IP D  ++V+ LA   +  +   G SRS+F+   +  +   LE+N  PG+T  S
Sbjct: 243 EITPARIPEDTAEKVRELAARIYDRLRMTGYSRSEFIL--VDGEPHLLEVNTTPGLTEAS 300

Query: 273 IFPEMAAYAGYSFRELLLWMVEDA 296
           I P+ AA AG S  EL    + DA
Sbjct: 301 ILPQQAACAGISLTELFGSAIADA 324


>gi|301054153|ref|YP_003792364.1| D-alanylalanine synthetase [Bacillus anthracis CI]
 gi|300376322|gb|ADK05226.1| D-alanylalanine synthetase [Bacillus cereus biovar anthracis str.
           CI]
          Length = 311

 Score =  144 bits (362), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 91/305 (29%), Positives = 163/305 (53%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGG+SSE++VS+ +G    + L+   +++  I ++  + L+      D A   LHG
Sbjct: 10  IGVIMGGVSSEKQVSIMTGNEMIAHLDKNKYEIVPIKLNEKMDLIEKAKDIDFALLALHG 69

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---FT 117
            +GEDG VQ  LE L IPY+ S +L+S + MDK  SK+++   G+     I + +     
Sbjct: 70  KYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNISKKILRYEGIETPDWIELTKMEDLN 129

Query: 118 MDSQHLISPPYVIKPLKGGSSLGI-IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
           +D    +  P V+KP  GGSS+G+ IV  KD+ I + L     W+   +++IE+Y+ G E
Sbjct: 130 LDELDKLGFPLVVKPNSGGSSVGVKIVYDKDELISM-LETVFEWDS--EVVIEKYIKGDE 186

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +TC +     L +  I    ++F+ Y  KY    +   +  ++P ++ + V + +   ++
Sbjct: 187 ITCSIFDGKQLPIISIR-HAAEFFDYNAKYDDAGTIEEV-IELPTELKERVNKASLACYK 244

Query: 237 AIGCRGISRSDFLF-DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           A+ C   +R D +  D +    + +E+N  PGMT  S+ P+ A   G  + +LL  ++E 
Sbjct: 245 ALKCSVYARVDMMVKDGIP---YVMEVNTLPGMTQASLLPKSAEAEGIDYSKLLDMIIET 301

Query: 296 ASCLR 300
           +  +R
Sbjct: 302 SLRVR 306


>gi|258655502|ref|YP_003204658.1| D-alanine--D-alanine ligase [Nakamurella multipartita DSM 44233]
 gi|258558727|gb|ACV81669.1| D-alanine--D-alanine ligase [Nakamurella multipartita DSM 44233]
          Length = 315

 Score =  144 bits (362), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 102/308 (33%), Positives = 161/308 (52%), Gaps = 18/308 (5%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62
           VL GG+S ER+VSL SG     AL   G +V+  D D  +   L   +PD A   LHG+ 
Sbjct: 7   VLAGGLSHERDVSLRSGSRLQDALHGRGLEVTPRDTDGELIDWLTGQRPDAAIVALHGSR 66

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCG--VPVCPSILVNRFT-MD 119
           GE+G +Q+ILE++ IPY  +      LS +K  +K ++   G   P   S+  + F  + 
Sbjct: 67  GENGAIQSILEMIGIPYVGTTSTNCRLSYEKNIAKNLMRRHGFATPAWVSLSHSTFRDLG 126

Query: 120 SQHL-------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
           +Q L       +  P ++KP  GGS+LG   ++    +P  L+   ++ +G+  ++EQ++
Sbjct: 127 AQTLMGLLVGHLGLPLMVKPQHGGSALGATPVRTADELPAALV--GAFAYGEIAVVEQFI 184

Query: 173 DGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           +G EL   V+    G  +L   EIA P S  + YE +Y++  +T+  PA++   +     
Sbjct: 185 EGTELAITVVDRRDGPQALPAVEIA-PHSGVFDYESRYTAGLTTYYTPARLDEAVATAAA 243

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
            LA  AH+ +G R +SR+D +       V +LE+NV PG+T  S+ P     AG S  EL
Sbjct: 244 ELAIGAHRTLGLRDVSRTDAIAGA-DGAVHFLEVNVSPGLTETSLLPMAVEAAGGSLGEL 302

Query: 289 LLWMVEDA 296
              +VE A
Sbjct: 303 YAGLVERA 310


>gi|328885299|emb|CCA58538.1| D-alanine--D-alanine ligase [Streptomyces venezuelae ATCC 10712]
          Length = 379

 Score =  143 bits (361), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 98/293 (33%), Positives = 147/293 (50%), Gaps = 27/293 (9%)

Query: 27  EDAGFKVSQIDVDRSVGLVLAHLKP------DLAFNVLHGNFGEDGLVQAILELLEIPYT 80
           E  G  +S    DR V L      P      D+ F +LHG +GEDG +Q +LEL  +PY 
Sbjct: 83  ETGGVVLSVDPADRQVVLTEPGAVPKALGEVDVVFPMLHGPYGEDGTLQGLLELSGVPYV 142

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP------------PY 128
            +G+LASA+  DK   K+V  S G+PV P  ++     +     +             P 
Sbjct: 143 GAGVLASAVGQDKEYMKRVFVSFGLPVGPYEVIRPREWEQNPAAARKKIVEFAAEHGWPL 202

Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG----- 183
            +KP +GGSS+GI   K D    LD     +  H  ++L+E  + G E+ CGV+      
Sbjct: 203 FVKPARGGSSMGI--TKVDDLSGLDEAIEEARRHDPKILVESLLRGREIECGVLEFEDGP 260

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
            AS+      V   DFY +E KY   +++ ++PA I  +   E+QRLA  A++A+ C G+
Sbjct: 261 RASVPAEIPPVTNHDFYDFEAKYID-SASGIVPAPIGDEATAEIQRLAVAAYEAVSCEGL 319

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            R+DF        V   EIN  PG TP+S++P M   +G S+ EL+  +++ A
Sbjct: 320 VRADFFLTEDGDFVI-NEINTMPGFTPISMYPRMWQESGVSYPELVDRLIQAA 371


>gi|124026431|ref|YP_001015546.1| D-alanine--D-alanine ligase [Prochlorococcus marinus str. NATL1A]
 gi|166198498|sp|A2C472|DDL_PROM1 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|123961499|gb|ABM76282.1| D-alanine--D-alanine ligase [Prochlorococcus marinus str. NATL1A]
          Length = 348

 Score =  143 bits (361), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 97/341 (28%), Positives = 175/341 (51%), Gaps = 47/341 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASAL----------------EDAGF------------- 31
           + V+ GG SSE EVS+ S K   +AL                +  G+             
Sbjct: 8   IGVVFGGKSSEHEVSIKSAKTIYNALSHLSNKERYVARPVYIDKYGYWHDYIFSESILYD 67

Query: 32  -KVSQIDVDRSVGLV-LAHLKP-DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
            K   I  DR V L  L++++  D+ F  LHG  GEDG++Q + +    P+  SG+L SA
Sbjct: 68  KKDHLIFEDRRVNLTNLSNMEDIDVWFPCLHGPNGEDGVIQGLFKSTGKPFVGSGVLGSA 127

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ-----------HLISPPYVIKPLKGGS 137
           L MDK+  K V  S  +P  P + +N+  + +             +I+ P  IKP   GS
Sbjct: 128 LGMDKIAMKSVFKSYNLPQVPYVSLNKADIQNNLYMKSIYEQINKIINYPCFIKPANLGS 187

Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK- 196
           S+GI      +     +  ++ ++  +++++E+ ++G EL CGV+G + +  + +   K 
Sbjct: 188 SVGITKAYSKEEFITGIEFAAKYD--ERIIVEKSIEGRELECGVLGKSIMKSSVVGEVKF 245

Query: 197 -SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255
            +D+Y+YE KY++  S+ ++PA + ++I  ++Q+LA  A +AI   G++R DF +   ++
Sbjct: 246 QTDWYTYESKYNANLSSTIIPADLNIEISNKIQKLAIEACKAINAYGLARVDFFYQESTQ 305

Query: 256 KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +++  E+N  PG T  S++P +   +G    +L+  ++E A
Sbjct: 306 QIYINEVNTLPGFTKTSMYPTLWEASGLKLEKLVASLIEIA 346


>gi|257126515|ref|YP_003164629.1| D-alanine--D-alanine ligase [Leptotrichia buccalis C-1013-b]
 gi|257050454|gb|ACV39638.1| D-alanine/D-alanine ligase [Leptotrichia buccalis C-1013-b]
          Length = 308

 Score =  143 bits (361), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 90/305 (29%), Positives = 162/305 (53%), Gaps = 16/305 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI--DVDRSVGLVLAHLKPDLAFNVL 58
           + V+ GG+S+EREVSL +G    + L    ++V  I  D ++ V   +  L  D  +  L
Sbjct: 6   VGVIRGGVSTEREVSLKTGSEIVANLNRDKYEVFDIVIDSEKEVFEKVKELNLDFVYIAL 65

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC--PSILVNRF 116
           HG FGEDG +QAIL+ L + Y+  G+++SA+ MDK  SK++V+  GV +    S+ V   
Sbjct: 66  HGVFGEDGRIQAILQSLGVAYSGPGVMSSAVCMDKEFSKRIVAGYGVRIAKWKSVRVGE- 124

Query: 117 TMDSQHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIP--LDLLQSSSWNHGDQLLIEQY 171
           T+D + +   +    V+KP  GGSS+G+  ++  + +   L+L+    +    + LIE+ 
Sbjct: 125 TVDFETIKKELGNRVVVKPNSGGSSIGVSFVENQEELEKGLELV----FGMDKEALIEEV 180

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G+E++  V+         I     D++ YE KY+   +   +  + P ++  E+ + A
Sbjct: 181 LHGVEISVPVIDGKVFPTIRIEALAGDYFDYESKYAKGGANEYV-FEFPEEVQAEINKFA 239

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             ++  + C G +R DF+        +++E+N  PGMT  S+ P+  A  GY + + L  
Sbjct: 240 KDSYYGLKCEGFARIDFMVVN-EETPYFMEVNTSPGMTSASLLPKSTASKGYDYAQTLDL 298

Query: 292 MVEDA 296
           ++E +
Sbjct: 299 LIESS 303


>gi|31794157|ref|NP_856650.1| D-alanyl-alanine synthetase A [Mycobacterium bovis AF2122/97]
 gi|39930832|sp|Q7TXH9|DDL_MYCBO RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|31619752|emb|CAD96692.1| PROBABLE D-ALANINE--D-ALANINE LIGASE DDLA (D-ALANYLALANINE
           SYNTHETASE) (D-ALA-D-ALA LIGASE) [Mycobacterium bovis
           AF2122/97]
          Length = 370

 Score =  143 bits (361), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 88/259 (33%), Positives = 143/259 (55%), Gaps = 18/259 (6%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+ F VLHG +GEDG +Q +LEL  +PY  +G+LASA+ MDK  +K+++++ G+PV    
Sbjct: 108 DVVFPVLHGPYGEDGTIQGLLELAGVPYVGAGVLASAVGMDKEFTKKLLAADGLPVGAYA 167

Query: 112 LVN--RFTMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL 167
           ++   R T+  Q    +  P  +KP +GGSS+G+  +     +P  + ++    H  +++
Sbjct: 168 VLRPPRSTLHRQECERLGLPVFVKPARGGSSIGVSRVSSWDQLPAAVARAR--RHDPKVI 225

Query: 168 IEQYVDGIELTCGV--MGDASLDVT---EIAVP-----KSDFYSYELKYSSLNSTHVLPA 217
           +E  + G EL CGV  M D +L+ +   EI V      +  FY +  KY    +   +PA
Sbjct: 226 VEAAISGRELECGVLEMPDGTLEASTLGEIRVAGVRGREDSFYDFATKYLDDAAELDVPA 285

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
           K+   + + +++LA  A  AI CRG++R DF        +   EIN  PG T +S++P M
Sbjct: 286 KVDDQVAEAIRQLAIRAFAAIDCRGLARVDFFLTDDGPVIN--EINTMPGFTTISMYPRM 343

Query: 278 AAYAGYSFRELLLWMVEDA 296
            A +G  +  LL  M+E A
Sbjct: 344 WAASGVDYPTLLATMIETA 362


>gi|108805737|ref|YP_645674.1| D-alanine--D-alanine ligase [Rubrobacter xylanophilus DSM 9941]
 gi|108766980|gb|ABG05862.1| D-alanine--D-alanine ligase [Rubrobacter xylanophilus DSM 9941]
          Length = 351

 Score =  143 bits (361), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 101/336 (30%), Positives = 160/336 (47%), Gaps = 46/336 (13%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR----------------SVG--- 43
           V+ GG S E EVSL+S ++    L  AG +V  + + R                + G   
Sbjct: 6   VVFGGRSGEHEVSLASARSVMEGLRKAGHEVVPVGITREGRWLAGEDPLRELEAAAGGNA 65

Query: 44  -------LVLAHLKP------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
                   + AH  P      D+ F VLHG +GEDG +Q +LEL +IPY  +G+LASA+ 
Sbjct: 66  GSPSGPPALAAHRPPAELESVDVVFPVLHGPYGEDGTIQGLLELADIPYVGAGVLASAVG 125

Query: 91  MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP---------PYVIKPLKGGSSLGI 141
           MDK+  K+V +  G+P    + + R     +              P  +KP   GSS+GI
Sbjct: 126 MDKITMKKVFAHHGLPQVRWVELTRRRWQERRKELLREVEEELGFPCFVKPSNLGSSVGI 185

Query: 142 IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSD 198
              +  +   L     ++     ++++E  VD  E+   V+G+ + +V+   EI + K D
Sbjct: 186 S--RAAEPGELAAALDAAAALDRRIIVEAGVDAREVEVSVLGNEAPEVSVPGEILIRKGD 243

Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
           FY YE KYS        PA +P +   E++R+A  A +AI   G++R DF  +  + +V 
Sbjct: 244 FYDYEAKYSEGGMELEAPADLPQETAGEIRRIARTAFEAIDAAGMARVDFFLERRTGRVL 303

Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             EIN  PG T  S++  +   +G  +  LL  ++E
Sbjct: 304 LNEINTIPGFTATSVYSRLWEASGLPYERLLERLIE 339


>gi|304315733|ref|YP_003850878.1| D-alanine/D-alanine ligase [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302777235|gb|ADL67794.1| D-alanine/D-alanine ligase [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 361

 Score =  143 bits (361), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 87/251 (34%), Positives = 143/251 (56%), Gaps = 16/251 (6%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+ F VLHG  GEDG VQ +LELLE+PY    +L+S+L MDK+ SK++    G+P     
Sbjct: 96  DVVFPVLHGPNGEDGTVQGLLELLEMPYVGPNVLSSSLCMDKVFSKRIFLEAGIPTPKFT 155

Query: 112 LVNRFTMDSQH----------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN 161
           +V R  +++             I  P  +KP   GSS+GI  +  +  + +D L+ +S  
Sbjct: 156 VVYRKELNNVDNYEEIRRRVSEIGYPCFVKPANMGSSVGITKVHNENEL-MDGLKLAS-K 213

Query: 162 HGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAK 218
           +  +++IE+ +D  E+ C V+G+ + + +   EI VP  +FY Y+ KY    S   +PA 
Sbjct: 214 YDRKIIIEEGIDAREIECSVLGNDNPEASIAGEI-VPAHEFYDYDAKYFDEASKLFIPAP 272

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278
           IP    +E++ LA  A+ A+  RG++R DFL D  + KV+  E+N  PG T +S++P++ 
Sbjct: 273 IPDVKMEEIRELAIKAYIALDVRGMARVDFLMDKNTGKVYLNELNTIPGFTKISMYPKLW 332

Query: 279 AYAGYSFRELL 289
             +G  + +L+
Sbjct: 333 EASGKPYSKLI 343


>gi|215412825|ref|ZP_03421537.1| D-alanyl-alanine synthetase A [Mycobacterium tuberculosis
           94_M4241A]
 gi|215428433|ref|ZP_03426352.1| D-alanyl-alanine synthetase A [Mycobacterium tuberculosis T92]
 gi|215431931|ref|ZP_03429850.1| D-alanyl-alanine synthetase A [Mycobacterium tuberculosis EAS054]
 gi|215447248|ref|ZP_03434000.1| D-alanyl-alanine synthetase A [Mycobacterium tuberculosis T85]
 gi|218754742|ref|ZP_03533538.1| D-alanyl-alanine synthetase A [Mycobacterium tuberculosis GM 1503]
 gi|219559013|ref|ZP_03538089.1| D-alanyl-alanine synthetase A [Mycobacterium tuberculosis T17]
 gi|253797926|ref|YP_003030927.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis KZN
           1435]
 gi|260202123|ref|ZP_05769614.1| D-alanyl-alanine synthetase A [Mycobacterium tuberculosis T46]
 gi|253319429|gb|ACT24032.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis KZN
           1435]
          Length = 358

 Score =  143 bits (361), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 88/259 (33%), Positives = 143/259 (55%), Gaps = 18/259 (6%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+ F VLHG +GEDG +Q +LEL  +PY  +G+LASA+ MDK  +K+++++ G+PV    
Sbjct: 96  DVVFPVLHGPYGEDGTIQGLLELAGVPYVGAGVLASAVGMDKEFTKKLLAADGLPVGAYA 155

Query: 112 LVN--RFTMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL 167
           ++   R T+  Q    +  P  +KP +GGSS+G+  +     +P  + ++    H  +++
Sbjct: 156 VLRPPRSTLHRQECERLGLPVFVKPARGGSSIGVSRVSSWDQLPAAVARAR--RHDPKVI 213

Query: 168 IEQYVDGIELTCGV--MGDASLDVT---EIAVP-----KSDFYSYELKYSSLNSTHVLPA 217
           +E  + G EL CGV  M D +L+ +   EI V      +  FY +  KY    +   +PA
Sbjct: 214 VEAAISGRELECGVLEMPDGTLEASTLGEIRVAGVRGREDSFYDFATKYLDDAAELDVPA 273

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
           K+   + + +++LA  A  AI CRG++R DF        +   EIN  PG T +S++P M
Sbjct: 274 KVDDQVAEAIRQLAIRAFAAIDCRGLARVDFFLTDDGPVIN--EINTMPGFTTISMYPRM 331

Query: 278 AAYAGYSFRELLLWMVEDA 296
            A +G  +  LL  M+E A
Sbjct: 332 WAASGVDYPTLLATMIETA 350


>gi|194334287|ref|YP_002016147.1| D-alanyl-alanine synthetase A [Prosthecochloris aestuarii DSM 271]
 gi|229485974|sp|B4S8W3|DDL_PROA2 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|194312105|gb|ACF46500.1| D-alanine/D-alanine ligase [Prosthecochloris aestuarii DSM 271]
          Length = 360

 Score =  143 bits (361), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 78/249 (31%), Positives = 138/249 (55%), Gaps = 13/249 (5%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+A  ++HG+ GEDG +Q +L++  +PYT  G+ ASA++MDK  +K      G+ + P  
Sbjct: 101 DVALPIIHGSTGEDGKIQGLLDMFSVPYTGCGVHASAMTMDKETTKICAEHAGLHIAPYT 160

Query: 112 LVN--RFTMDSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
            +   R+  D Q ++S        P+ +KP   GSS+GI  + + + +   L    ++  
Sbjct: 161 TIRKLRYQQDPQQVVSVILEEFTLPFFVKPASQGSSIGITKVHRPEELAAAL--EKAFMV 218

Query: 163 GDQLLIEQYVDGIELTCGVMGDAS--LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
             ++LIE+ ++G E+   V+G+ S    V     P  DFY +  KY +  ++  +PA++P
Sbjct: 219 DTKVLIEKTIEGREIEVAVLGNDSPVASVPGEVEPGGDFYDFTDKYINGKASLHIPARLP 278

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280
            ++ ++V   A  A++A+ CRG+SR DF  +  + K+   EIN  PG T +S++P M   
Sbjct: 279 EEVLQKVSTEALKAYRALECRGMSRVDFFIEHATGKIILNEINTVPGFTGISMYPMMMDA 338

Query: 281 AGYSFRELL 289
           +G  F +L+
Sbjct: 339 SGIDFSQLI 347


>gi|258511603|ref|YP_003185037.1| D-alanine/D-alanine ligase [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
 gi|257478329|gb|ACV58648.1| D-alanine/D-alanine ligase [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 383

 Score =  143 bits (361), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 85/254 (33%), Positives = 138/254 (54%), Gaps = 13/254 (5%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+ F VLHG FGEDG +Q +LE++ IPY  SG+LASAL MDK+  KQ+ S+ G+P    +
Sbjct: 113 DVVFPVLHGTFGEDGTIQGLLEMVGIPYVGSGVLASALGMDKIAMKQIFSAVGIPQARWV 172

Query: 112 LVNR--FTMDSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
              R  +  D   ++         P  +KP   GSS+GI   +  + +   +  + S++ 
Sbjct: 173 GFTRASWAQDDGRIVREIEEQLGYPCFVKPANLGSSVGISKARNQRELVEAVHLALSYDR 232

Query: 163 GDQLLIEQYVDGIELTCGVMG--DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
             ++++E+ +D  E+  G++G  D    V    VPK +FY YE KY    +   +PA + 
Sbjct: 233 --RVIVEEAIDAREIEIGILGNDDPIASVAGEIVPKREFYDYEAKYQDGGAELRIPADLS 290

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280
            +  K V+  A  A QAI   G++R DF  +  + +V   EIN  PG T  S++P++   
Sbjct: 291 PEERKAVESYAIRAFQAIDGSGLARVDFFVERGTGRVLVNEINTMPGFTRFSMYPKLWEA 350

Query: 281 AGYSFRELLLWMVE 294
           +G ++ +LL  ++E
Sbjct: 351 SGLAYDKLLDRLIE 364


>gi|269838014|ref|YP_003320242.1| D-alanine/D-alanine ligase [Sphaerobacter thermophilus DSM 20745]
 gi|269787277|gb|ACZ39420.1| D-alanine/D-alanine ligase [Sphaerobacter thermophilus DSM 20745]
          Length = 375

 Score =  143 bits (361), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 83/255 (32%), Positives = 142/255 (55%), Gaps = 15/255 (5%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+ F VLHG +GEDG VQ +LEL ++PY  +G+L SA+SMDK+ +KQ+    G+PV P +
Sbjct: 109 DVVFPVLHGPYGEDGTVQGLLELADVPYVGAGVLGSAVSMDKVVAKQLFEREGLPVAPWL 168

Query: 112 LVNRFTMDS---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
            V R   +          +  +  P  +KP   GSS+G+  +     +P  + +++ ++ 
Sbjct: 169 WVTRRQWERDPEGVAARVERELGYPCFVKPANLGSSVGVSKVHHPGELPGAMEEAARYDR 228

Query: 163 GDQLLIEQYVDGIELTCGVMGD---ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI 219
             +L++E+ +D  EL   V+G+    +  V EI  P ++FY Y+ KY    S  ++PA I
Sbjct: 229 --KLVVERGIDARELEVSVLGNDEPITSVVGEIR-PVNEFYDYQAKYVDEGSELLVPAPI 285

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279
             +    V+ +A  A + +   G++R DF  +  +  ++  EIN  PG T +S++P +  
Sbjct: 286 TQEQSDTVREMAVRAFKVVDAAGMARVDFFLERNTGTIYINEINTIPGFTQISMYPILWE 345

Query: 280 YAGYSFRELLLWMVE 294
            +G SFREL+  ++E
Sbjct: 346 ASGLSFRELVSRLIE 360


>gi|254967001|gb|ACT97536.1| putative D-alanyl-alanine synthetase A [uncultured organism]
          Length = 322

 Score =  143 bits (361), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 95/323 (29%), Positives = 164/323 (50%), Gaps = 33/323 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKV-----------------SQIDVDRS-V 42
           +A++ GG SSE  VSL S +   S ++   + +                 ++  +DR+  
Sbjct: 5   IAIVAGGDSSELPVSLRSAQGIYSFIDKERYNLYIVEMEGHRWEVILPDGTKTPIDRNDF 64

Query: 43  GLVLAHLKP--DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           G +    K   D A+  +HG  GE+G++Q   +LL IPY+   +L SA++ +K    Q +
Sbjct: 65  GFMENGEKKLFDFAYITIHGTPGENGILQGYFDLLGIPYSSCNVLVSAITFNKFTCNQYL 124

Query: 101 SSCGVPVCPSILVNR-FTMDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
              G+ V  S+++ + F +  Q +IS    P  IKP  GGSS G+  +K ++ I   +  
Sbjct: 125 KGFGIRVSESLILRKGFEITDQEVISKIGLPCFIKPNAGGSSFGVTKVKTEEEIQPAI-- 182

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV----TEIAVPKSDFYSYELKYSSLNST 212
             +++  D+++IE Y+ G E+TCG       +V    TE+ V  ++F+ Y+ KY+     
Sbjct: 183 EKAFHESDEVMIEAYMKGTEVTCGCYKTKDKEVVFPITEV-VTDNEFFDYDAKYNG-QVQ 240

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
            + PA++P D  + V+ L    +  +GC GI R D++      KV  LEIN  PGMT  S
Sbjct: 241 EITPARLPEDTAERVRLLTSAIYDILGCSGIIRIDYIITE-GDKVNLLEINTTPGMTATS 299

Query: 273 IFPEMAAYAGYSFRELLLWMVED 295
             P+    AG   ++++  ++E+
Sbjct: 300 FIPQQVRAAGLDIKDVMTDIIEN 322


>gi|85858831|ref|YP_461033.1| D-alanine--D-alanine ligase [Syntrophus aciditrophicus SB]
 gi|85721922|gb|ABC76865.1| D-alanine--D-alanine ligase [Syntrophus aciditrophicus SB]
          Length = 355

 Score =  143 bits (361), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 107/339 (31%), Positives = 169/339 (49%), Gaps = 48/339 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50
           + ++M G+SSE+EVSL SG+   S ++   +    I +D    L    LK          
Sbjct: 11  VGIIMAGLSSEKEVSLESGRNIFSKIDRRKYSPIPIFMDSDAALWEIPLKLLMRNCTRDV 70

Query: 51  -------------------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSM 91
                               DL F  LHG +GEDG +Q +LELL+IPYT SG+LASAL M
Sbjct: 71  EEDLAEEAVRVPYEELKTRVDLVFLALHGKYGEDGCMQGLLELLKIPYTGSGVLASALGM 130

Query: 92  DKMRSKQVVSSCGVPVCPSILVNR-----------FTMDSQHLISPPYVIKPLKGGSSLG 140
           DK+ S++V+   G+ V  ++ V R           F    Q  I  P V+KP + G S G
Sbjct: 131 DKLASRRVLEINGIDVPRTVPVFRGAWKPEEENALFERIEQE-IGFPCVVKPSREGCSTG 189

Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD---ASLDVTEIAVPKS 197
           +  +     +   L  +  W+     L+E+++DG+E+TCG++G     +L  +E  +  S
Sbjct: 190 VKKVMSRAGLSDALNGAFLWDC--TALVEEFIDGMEVTCGILGGNPPTALTPSE-TIATS 246

Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
           D  S E K+      +  PA++P +   ++Q +A  A +A+  +G +R D +F   + +V
Sbjct: 247 DVLSLEDKFLYGQGENKTPARLPGETLMKIQEVAVKAFEALDLKGYARID-MFVTSAGRV 305

Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             LE N QPGMTP ++    AA +G +   L+  ++E A
Sbjct: 306 LVLEPNTQPGMTPSTVLFHQAAASGITQTGLVDRILEAA 344


>gi|149183239|ref|ZP_01861683.1| D-alanylalanine synthetase [Bacillus sp. SG-1]
 gi|148849035|gb|EDL63241.1| D-alanylalanine synthetase [Bacillus sp. SG-1]
          Length = 279

 Score =  143 bits (361), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 81/254 (31%), Positives = 142/254 (55%), Gaps = 14/254 (5%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+   +LHG  GEDG VQ +LELL +PY  +G+LASA  MDK+  K + +  G+P    +
Sbjct: 13  DVILPLLHGPNGEDGTVQGMLELLNLPYVGNGVLASAAGMDKVIMKNLYAQAGIPQVNYV 72

Query: 112 LVNRFTMDS---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
              + T ++         +  +  P  +KP   GSS+GI   +  + + L   ++  ++ 
Sbjct: 73  WYLKKTWENDPEAAYLKVEKELGYPCFVKPANLGSSVGISKAESREELILAFKEAFQFDR 132

Query: 163 GDQLLIEQYVDGIELTCGVMGDASLD--VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
             +++IEQ V   E+  GV+G+   +  V    +PK DFY Y+ KY   ++  ++PA+IP
Sbjct: 133 --KIIIEQGVKAREIELGVLGNDEPECSVAGEILPKKDFYDYKAKYEDGDTALIIPAEIP 190

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280
            D+Y++++R+A  + +A+ C G+ R+DF        ++  E+N  PG TP S+FP +  +
Sbjct: 191 ADVYEDMKRIAVDSFKALDCSGLVRADFFLTE-DGTIYMNEVNTMPGFTPFSMFPLLWKH 249

Query: 281 AGYSFRELLLWMVE 294
           +G  + EL+  +V+
Sbjct: 250 SGVEYPELIERLVK 263


>gi|331092269|ref|ZP_08341097.1| hypothetical protein HMPREF9477_01740 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330401701|gb|EGG81280.1| hypothetical protein HMPREF9477_01740 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 350

 Score =  143 bits (361), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 106/343 (30%), Positives = 165/343 (48%), Gaps = 55/343 (16%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVS--------QIDVDR--------SVGLVL 46
           VL GG+S+ER+VSLSSG      L++ G  V         + D D+        + GL +
Sbjct: 5   VLAGGLSTERDVSLSSGAGICRTLKERGHDVFLLDAFMGLEYDSDKLEEVFTLENSGLEI 64

Query: 47  AH----LKPDL----------------------------AFNVLHGNFGEDGLVQAILEL 74
           A      +PDL                             F  LHG+ GE+G +QA  ++
Sbjct: 65  AEGIKTTEPDLEAVKASRPDQSPSLLGPNVIELCRMADIVFMGLHGDIGENGKLQATFDI 124

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---QHLISPPYVIK 131
           L I YT    L SAL+MDK  +KQ+    GVP      + +   D+   +  +S P V+K
Sbjct: 125 LGIKYTGPNSLGSALAMDKGVTKQIFKMSGVPTPAGTWLKKADKDTTLNELGLSLPVVVK 184

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P  GGSS+G+ + + +      +    S+ + D+++IE Y+ G E   G++   +L V E
Sbjct: 185 PCSGGSSIGVYIPQTEAEYKTAV--EESFKYEDEIIIEPYIKGREFAVGIIDGKALPVIE 242

Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
           I +PKS+F+ Y  KY +  +  + PA I   I K +Q     A  A+     SR+DFL  
Sbjct: 243 I-IPKSNFFDYTNKYQAGCTEEICPAHIDDAIAKRMQEATEKAFAALKLDVYSRADFLLT 301

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
               +++ LE+N  PGMT  S+ P+ A  AG S+ +L   +++
Sbjct: 302 E-DGEIYCLEVNSLPGMTSASLLPKEAQAAGISYGDLCELIIQ 343


>gi|148241702|ref|YP_001226859.1| D-alanine--D-alanine ligase [Synechococcus sp. RCC307]
 gi|190359214|sp|A5GRJ7|DDL_SYNR3 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|147850012|emb|CAK27506.1| D-alanine--D-alanine ligase [Synechococcus sp. RCC307]
          Length = 345

 Score =  143 bits (361), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 107/339 (31%), Positives = 162/339 (47%), Gaps = 50/339 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAG----FKVSQIDVDR--------------SV 42
           + ++ GG S E +VS+ S    A  L        ++V  + +DR              S 
Sbjct: 9   VGLIFGGASGEHDVSIRSAATVAEGLSSGANKERYRVQHVYIDRQGRWWGDATARQVLSS 68

Query: 43  GLVLAH--------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
           G  LA               L+ ++ + VLHG  GEDG +Q +  L++ P+  SG+L SA
Sbjct: 69  GQALADDGSRPGFSGFPDGCLEVEIWYPVLHGPNGEDGTIQGLFSLMQRPFVGSGVLGSA 128

Query: 89  LSMDKMRSKQVVSSCGVPVCP--SILVNRFTMDSQHL------ISPPYVIKPLKGGSSLG 140
           + MDK+  K   S+ G+P  P   +L +    +SQ L      +  P  IKP   GSS+G
Sbjct: 129 VGMDKLAMKAAFSAAGLPQGPYRPVLASELVSNSQLLEELETQLGYPCFIKPANLGSSVG 188

Query: 141 I--IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVP 195
           I     + +    LDL  S    H  +LL+E+ +   EL C V+G   L  +   E++  
Sbjct: 189 ISKATNRSELQAGLDLAAS----HDSRLLVEKGLQVRELECAVLGGQHLKASVLGEVSF- 243

Query: 196 KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255
            +D+Y YE KYSS  S+  +PA +P  I    Q LA  A QA+G  G+SR DF ++  S 
Sbjct: 244 DADWYDYETKYSSGLSSTQIPADLPEAISSRAQHLAIEAVQAVGASGLSRVDFFYEEASG 303

Query: 256 KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            +   EIN  PG T  S++P +   +G    EL+  ++E
Sbjct: 304 NLLINEINTLPGFTSQSMYPMLWKASGVPLEELVHQLLE 342


>gi|161779899|gb|ABX79441.1| VanC1 [Enterococcus gallinarum]
          Length = 343

 Score =  143 bits (361), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 98/331 (29%), Positives = 165/331 (49%), Gaps = 45/331 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD--------------------- 39
           +AVL GG S E  VSL+S ++   A+    ++V  I +                      
Sbjct: 4   IAVLFGGNSPEYSVSLTSAESVIQAINPLKYEVMTIGIAPTMDWYWYQGNLANVRNDTWL 63

Query: 40  -----------RSVGLVLAHLK--PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
                       S G +L   +  PD+ F VLHG +GEDG +Q +LEL+ +PY    + A
Sbjct: 64  EDHKNCHQLTFSSQGFILGEKRIVPDVLFPVLHGKYGEDGCIQGLLELMNLPYVGCHVAA 123

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIKPLKGGSSLG 140
           SAL M+K    Q+  + G+   P++L++R+  D   +         P  IKP + GSS G
Sbjct: 124 SALCMNKWLLHQLADTMGIASAPTLLLSRYENDPATIDRFIQDHGFPIFIKPNEAGSSKG 183

Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI-AVPKSD- 198
           I  +    ++   L  ++++ +G  +LI++ + GIE+ CG++G+  L +    A+   D 
Sbjct: 184 ITKVTDKTALQSAL--TTAFAYGSTVLIQKAIAGIEIGCGILGNEQLTIGACDAISLVDG 241

Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
           F+ +E KY  +++T  +PA +PL +  +++  A L ++ +G  G++R DF F      ++
Sbjct: 242 FFDFEEKYQLISATITVPAPLPLALESQIKEQAQLLYRNLGLTGLARIDF-FVTNQGAIY 300

Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
             EIN  PG T  S +P M A  G S+  L+
Sbjct: 301 LNEINTMPGFTGHSRYPAMMAEVGLSYEILV 331


>gi|267275|sp|P29753|VANC_ENTGA RecName: Full=Vancomycin C-type resistance protein VanC; AltName:
           Full=VanC ligase
 gi|148325|gb|AAA24786.1| D-alanine-D-alanine ligase-related protein [Enterococcus
           gallinarum]
 gi|161779897|gb|ABX79440.1| VanC1 [Enterococcus gallinarum]
          Length = 343

 Score =  143 bits (360), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 98/331 (29%), Positives = 165/331 (49%), Gaps = 45/331 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD--------------------- 39
           +AVL GG S E  VSL+S  +   A++   ++V  I +                      
Sbjct: 4   IAVLFGGNSPEYSVSLTSAASVIQAIDPLKYEVMTIGIAPTMDWYWYQGNLANVRNDTWL 63

Query: 40  -----------RSVGLVLAHLK--PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
                       S G +L   +  PD+ F VLHG +GEDG +Q +LEL+ +PY    + A
Sbjct: 64  EDHKNCHQLTFSSQGFILGEKRIVPDVLFPVLHGKYGEDGCIQGLLELMNLPYVGCHVAA 123

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIKPLKGGSSLG 140
           SAL M+K    Q+  + G+   P++L++R+  D   +         P  IKP + GSS G
Sbjct: 124 SALCMNKWLLHQLADTMGIASAPTLLLSRYENDPATIDRFIQDHGFPIFIKPNEAGSSKG 183

Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI-AVPKSD- 198
           I  +    ++   L  ++++ +G  +LI++ + GIE+ CG++G+  L +    A+   D 
Sbjct: 184 ITKVTDKTALQSAL--TTAFAYGSTVLIQKAIAGIEIGCGILGNEQLTIGACDAISLVDG 241

Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
           F+ +E KY  +++T  +PA +PL +  +++  A L ++ +G  G++R DF F      ++
Sbjct: 242 FFDFEEKYQLISATITVPAPLPLALESQIKEQAQLLYRNLGLTGLARIDF-FVTNQGAIY 300

Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
             EIN  PG T  S +P M A  G S+  L+
Sbjct: 301 LNEINTMPGFTGHSRYPAMMAEVGLSYEILV 331


>gi|257869524|ref|ZP_05649177.1| vancomycin resistance protein vanC [Enterococcus gallinarum EG2]
 gi|257803688|gb|EEV32510.1| vancomycin resistance protein vanC [Enterococcus gallinarum EG2]
          Length = 344

 Score =  143 bits (360), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 98/331 (29%), Positives = 165/331 (49%), Gaps = 45/331 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD--------------------- 39
           +AVL GG S E  VSL+S  +   A++   ++V  I +                      
Sbjct: 5   IAVLFGGNSPEYSVSLTSAASVIQAIDPLKYEVMTIGIAPTMDWYWYQGNLANVRNDTWL 64

Query: 40  -----------RSVGLVLAHLK--PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
                       S G +L   +  PD+ F VLHG +GEDG +Q +LEL+ +PY    + A
Sbjct: 65  EDHKNCHQLTFSSQGFILGEKRIVPDVLFPVLHGKYGEDGCIQGLLELMNLPYVGCHVAA 124

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIKPLKGGSSLG 140
           SAL M+K    Q+  + G+   P++L++R+  D   +         P  IKP + GSS G
Sbjct: 125 SALCMNKWLLHQLADTMGIASAPTLLLSRYENDPATIDRFIQDHGFPIFIKPNEAGSSKG 184

Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI-AVPKSD- 198
           I  +    ++   L  ++++ +G  +LI++ + GIE+ CG++G+  L +    A+   D 
Sbjct: 185 ITKVTDKTALQSAL--TTAFAYGSTVLIQKAIAGIEIGCGILGNEQLTIGACDAISLVDG 242

Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
           F+ +E KY  +++T  +PA +PL +  +++  A L ++ +G  G++R DF F      ++
Sbjct: 243 FFDFEEKYQLISATITVPAPLPLALESQIKEQAQLLYRNLGLTGLARIDF-FVTNQGAIY 301

Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
             EIN  PG T  S +P M A  G S+  L+
Sbjct: 302 LNEINTMPGFTGHSRYPAMMAEVGLSYEILV 332


>gi|161779893|gb|ABX79438.1| VanC1 [Enterococcus gallinarum]
          Length = 343

 Score =  143 bits (360), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 98/331 (29%), Positives = 165/331 (49%), Gaps = 45/331 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD--------------------- 39
           +AVL GG S E  VSL+S  +   A++   ++V  I +                      
Sbjct: 4   IAVLFGGNSPEYSVSLTSAASVIQAIDPLKYEVMTIGIAPTMDWYWYQGNLANVRNDTWL 63

Query: 40  -----------RSVGLVLAHLK--PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
                       S G +L   +  PD+ F VLHG +GEDG +Q +LEL+ +PY    + A
Sbjct: 64  EDHKNCHQLTFSSQGFILGEKRIVPDVLFPVLHGKYGEDGCIQGLLELMNLPYVGCHVAA 123

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIKPLKGGSSLG 140
           SAL M+K    Q+  + G+   P++L++R+  D   +         P  IKP + GSS G
Sbjct: 124 SALCMNKWLLHQLADTMGIASAPTLLLSRYENDPATIDRFIQDHGFPIFIKPNEAGSSKG 183

Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI-AVPKSD- 198
           I  +    ++   L  ++++ +G  +LI++ + GIE+ CG++G+  L +    A+   D 
Sbjct: 184 ITKVTDKTALQSAL--TTAFAYGSTVLIQKAIAGIEIGCGILGNEQLTIGACDAISLVDG 241

Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
           F+ +E KY  +++T  +PA +PL +  +++  A L ++ +G  G++R DF F      ++
Sbjct: 242 FFDFEEKYQLISATITVPAPLPLALESQIKEQAQLLYRNLGLTGLARIDF-FVTNQGAIY 300

Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
             EIN  PG T  S +P M A  G S+  L+
Sbjct: 301 LNEINTMPGFTGHSRYPAMMAEVGLSYEILV 331


>gi|15842537|ref|NP_337574.1| D-alanyl-alanine synthetase A [Mycobacterium tuberculosis CDC1551]
 gi|121638862|ref|YP_979086.1| D-alanyl-alanine synthetase A [Mycobacterium bovis BCG str. Pasteur
           1173P2]
 gi|148824171|ref|YP_001288925.1| D-alanyl-alanine synthetase A [Mycobacterium tuberculosis F11]
 gi|224991354|ref|YP_002646043.1| D-alanyl-alanine synthetase A [Mycobacterium bovis BCG str. Tokyo
           172]
 gi|254233065|ref|ZP_04926392.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis C]
 gi|254552058|ref|ZP_05142505.1| D-alanyl-alanine synthetase A [Mycobacterium tuberculosis '98-R604
           INH-RIF-EM']
 gi|260188005|ref|ZP_05765479.1| D-alanyl-alanine synthetase A [Mycobacterium tuberculosis CPHL_A]
 gi|289444545|ref|ZP_06434289.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis T46]
 gi|289448653|ref|ZP_06438397.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis CPHL_A]
 gi|289553229|ref|ZP_06442439.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis KZN
           605]
 gi|289571180|ref|ZP_06451407.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis T17]
 gi|289751658|ref|ZP_06511036.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis T92]
 gi|289755097|ref|ZP_06514475.1| D-Ala-D-Ala ligase [Mycobacterium tuberculosis EAS054]
 gi|289759106|ref|ZP_06518484.1| D-Ala-D-Ala ligase [Mycobacterium tuberculosis T85]
 gi|289763161|ref|ZP_06522539.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis GM
           1503]
 gi|294993933|ref|ZP_06799624.1| D-alanyl-alanine synthetase A [Mycobacterium tuberculosis 210]
 gi|297635606|ref|ZP_06953386.1| D-alanyl-alanine synthetase A [Mycobacterium tuberculosis KZN 4207]
 gi|297732604|ref|ZP_06961722.1| D-alanyl-alanine synthetase A [Mycobacterium tuberculosis KZN R506]
 gi|298526451|ref|ZP_07013860.1| D-alanine-D-alanine ligase [Mycobacterium tuberculosis 94_M4241A]
 gi|306789864|ref|ZP_07428186.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis
           SUMu004]
 gi|306804763|ref|ZP_07441431.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis
           SUMu008]
 gi|306808957|ref|ZP_07445625.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis
           SUMu007]
 gi|308369920|ref|ZP_07419522.2| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis
           SUMu002]
 gi|308371194|ref|ZP_07424146.2| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis
           SUMu003]
 gi|308373594|ref|ZP_07432977.2| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis
           SUMu005]
 gi|308374744|ref|ZP_07437220.2| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis
           SUMu006]
 gi|308378154|ref|ZP_07481716.2| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis
           SUMu009]
 gi|313659936|ref|ZP_07816816.1| D-alanyl-alanine synthetase A [Mycobacterium tuberculosis KZN
           V2475]
 gi|166198491|sp|A1KMX5|DDL_MYCBP RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|13882847|gb|AAK47388.1| D-alanine--D-alanine ligase [Mycobacterium tuberculosis CDC1551]
 gi|121494510|emb|CAL72991.1| Probable D-alanine--D-alanine ligase ddlA [Mycobacterium bovis BCG
           str. Pasteur 1173P2]
 gi|124602124|gb|EAY61134.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis C]
 gi|148722698|gb|ABR07323.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis F11]
 gi|224774469|dbj|BAH27275.1| D-alanyl-alanine synthetase A [Mycobacterium bovis BCG str. Tokyo
           172]
 gi|289417464|gb|EFD14704.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis T46]
 gi|289421611|gb|EFD18812.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis CPHL_A]
 gi|289437861|gb|EFD20354.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis KZN
           605]
 gi|289544934|gb|EFD48582.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis T17]
 gi|289692245|gb|EFD59674.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis T92]
 gi|289695684|gb|EFD63113.1| D-Ala-D-Ala ligase [Mycobacterium tuberculosis EAS054]
 gi|289710667|gb|EFD74683.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis GM
           1503]
 gi|289714670|gb|EFD78682.1| D-Ala-D-Ala ligase [Mycobacterium tuberculosis T85]
 gi|298496245|gb|EFI31539.1| D-alanine-D-alanine ligase [Mycobacterium tuberculosis 94_M4241A]
 gi|308325969|gb|EFP14820.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis
           SUMu002]
 gi|308329500|gb|EFP18351.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis
           SUMu003]
 gi|308333638|gb|EFP22489.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis
           SUMu004]
 gi|308336995|gb|EFP25846.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis
           SUMu005]
 gi|308340809|gb|EFP29660.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis
           SUMu006]
 gi|308344673|gb|EFP33524.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis
           SUMu007]
 gi|308348623|gb|EFP37474.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis
           SUMu008]
 gi|308353349|gb|EFP42200.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis
           SUMu009]
 gi|323718360|gb|EGB27534.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis
           CDC1551A]
 gi|326904595|gb|EGE51528.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis W-148]
 gi|328457701|gb|AEB03124.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis KZN
           4207]
          Length = 373

 Score =  143 bits (360), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 88/259 (33%), Positives = 143/259 (55%), Gaps = 18/259 (6%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+ F VLHG +GEDG +Q +LEL  +PY  +G+LASA+ MDK  +K+++++ G+PV    
Sbjct: 111 DVVFPVLHGPYGEDGTIQGLLELAGVPYVGAGVLASAVGMDKEFTKKLLAADGLPVGAYA 170

Query: 112 LVN--RFTMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL 167
           ++   R T+  Q    +  P  +KP +GGSS+G+  +     +P  + ++    H  +++
Sbjct: 171 VLRPPRSTLHRQECERLGLPVFVKPARGGSSIGVSRVSSWDQLPAAVARAR--RHDPKVI 228

Query: 168 IEQYVDGIELTCGV--MGDASLDVT---EIAVP-----KSDFYSYELKYSSLNSTHVLPA 217
           +E  + G EL CGV  M D +L+ +   EI V      +  FY +  KY    +   +PA
Sbjct: 229 VEAAISGRELECGVLEMPDGTLEASTLGEIRVAGVRGREDSFYDFATKYLDDAAELDVPA 288

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
           K+   + + +++LA  A  AI CRG++R DF        +   EIN  PG T +S++P M
Sbjct: 289 KVDDQVAEAIRQLAIRAFAAIDCRGLARVDFFLTDDGPVIN--EINTMPGFTTISMYPRM 346

Query: 278 AAYAGYSFRELLLWMVEDA 296
            A +G  +  LL  M+E A
Sbjct: 347 WAASGVDYPTLLATMIETA 365


>gi|15639657|ref|NP_219107.1| D-alanyl-alanine synthetase A [Treponema pallidum subsp. pallidum
           str. Nichols]
 gi|189025895|ref|YP_001933667.1| D-alanyl-alanine synthetase A [Treponema pallidum subsp. pallidum
           SS14]
 gi|6014942|sp|O83676|DDL_TREPA RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|229486020|sp|B2S3Q9|DDL_TREPS RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|3322972|gb|AAC26568.1| D-alanine--D-alanine ligase (ddlA) [Treponema pallidum subsp.
           pallidum str. Nichols]
 gi|189018470|gb|ACD71088.1| D-alanine--D-alanine ligase [Treponema pallidum subsp. pallidum
           SS14]
 gi|291060036|gb|ADD72771.1| D-alanine--D-alanine ligase [Treponema pallidum subsp. pallidum
           str. Chicago]
          Length = 396

 Score =  143 bits (360), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 89/290 (30%), Positives = 155/290 (53%), Gaps = 20/290 (6%)

Query: 16  LSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP---DLAFNVLHGNFGEDGLVQAIL 72
           L +G    S  ED   +V  +    + G  +    P   D+ F VLHG++GEDG VQ +L
Sbjct: 57  LCTGTVALSIQEDEKRRVCLVPGGGTAGAFVIAGMPCVTDVVFPVLHGSYGEDGTVQGLL 116

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--FTMDSQHLISP---- 126
           E+L++PY   G+ ASAL+MDK+++K +  + G+PV P +   +  + M  Q  ++     
Sbjct: 117 EMLQVPYVGCGVCASALAMDKVKAKMLWQAAGLPVLPFVFFRKDAWRMHMQEFVAQLETR 176

Query: 127 ---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
              P  +KP + GSS+G   ++    +   +  +  W+  + +L+E+YV   E+ C + G
Sbjct: 177 LGYPLFVKPAQAGSSVGASAVQTRAPLIPAIEAAFQWD--EVVLVERYVRAREIECALSG 234

Query: 184 DASLDVTEIA--VPKSDFYSYELKYSSLNSTHVLPAKIPLDI--YKEVQRLAFLAHQAIG 239
           +    V      + +  FY YE KY+  +   VL    PL+   Y+++  LA  A++A+G
Sbjct: 235 NGPYTVHGAGEVIAQGAFYDYEEKYADASVARVL-VTAPLETAQYEQITTLALRAYEALG 293

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
             G++R DF F   + +V+  E+N  PG T +S+FP++   AG + ++L+
Sbjct: 294 LTGLARVDF-FLLETGEVYVNEVNTMPGFTSISLFPQICQAAGVAPQDLM 342


>gi|21674167|ref|NP_662232.1| D-alanine-D-alanine ligase A [Chlorobium tepidum TLS]
 gi|39930903|sp|Q8KCR8|DDL_CHLTE RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|21647328|gb|AAM72574.1| D-alanine--D-alanine ligase A [Chlorobium tepidum TLS]
          Length = 364

 Score =  143 bits (360), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 97/340 (28%), Positives = 161/340 (47%), Gaps = 57/340 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------------------- 40
           +A+  GG S+E E+S+ S ++ A+ ++   +++S + +DR                    
Sbjct: 6   VALFFGGKSAEHEISIISARSIAAQIDRNRYELSPLYIDRDGKWHASECSQQVLDTDIAA 65

Query: 41  --------SVGLVLAHL----------------KPDLAFNVLHGNFGEDGLVQAILELLE 76
                   S G  L  L                  D+AF  LHG++GEDG +Q  L+   
Sbjct: 66  LLRSGTPESAGKRLDELTAAAAGECFDFGSFLKNTDVAFIALHGSYGEDGKLQGCLDTFG 125

Query: 77  IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---------ISPP 127
           IPYT  G+ ASAL+MDK+ +K    + G+ V   + +      +  L            P
Sbjct: 126 IPYTGCGLTASALAMDKVLTKLCAMNAGIAVAEFMTITSCAYMANPLETIVEITKRFDWP 185

Query: 128 YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL 187
             +KP   GSS+GI  ++  + +   L  +   +   + L+E  + G E+   V+G++  
Sbjct: 186 LFVKPASLGSSVGISKVRNAEELAAALENACGLDS--KALVEAAISGREIEVAVLGNSDP 243

Query: 188 DVTEIA--VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
             +E    +P SDFYSYE KY    +  V+PA +P  + +EV++ A    +A+GC G++R
Sbjct: 244 LASEPGEIIPGSDFYSYEDKYIKNEAKIVIPADLPEGVAEEVRKAALTVFKALGCEGMAR 303

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285
            DF  +  + +V   EIN  PG T +S++P M A +G  F
Sbjct: 304 VDFFVENGTNRVILNEINTIPGFTDISMYPMMMAASGIGF 343


>gi|134103809|ref|YP_001109470.1| D-alanine--D-alanine ligase B [Saccharopolyspora erythraea NRRL
           2338]
 gi|133916432|emb|CAM06545.1| D-alanine--D-alanine ligase B [Saccharopolyspora erythraea NRRL
           2338]
          Length = 315

 Score =  143 bits (360), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 95/310 (30%), Positives = 165/310 (53%), Gaps = 18/310 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG+S ER+VSL SG+  ++AL   G  V++ D D  +   +   +PD     LHG
Sbjct: 6   VAVLAGGLSHERDVSLRSGRRLSAALRSVGMTVAEWDADSRLLSRIEQERPDAVVVALHG 65

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117
             GE+G VQ++L++  IPY  +   A   + DK  +K  ++  G+     +++   T   
Sbjct: 66  GEGENGAVQSVLDMYGIPYVGTDPRACRRAWDKPTAKAELARSGLTTPDWVVLPHATFRE 125

Query: 118 MDSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           + +Q ++         P ++KP +GGS+LG  V++    +P  ++ + S+  GD +L+E+
Sbjct: 126 LGAQSVLDALVAKLGLPLMLKPDQGGSALGARVVRDAADLPSAMVGALSY--GDTVLVEK 183

Query: 171 YVDGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE 226
           Y++G E+  GV+    G  +L   +I    +  Y Y  +Y++  +T+  PA++  +    
Sbjct: 184 YIEGTEVAIGVLDGPDGPEALPAVQIEA-TNGVYDYTARYTAGLTTYRTPAELSPETAAA 242

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
              LA  AH+ +G R +SR+D + D     V +LE+NV PG+T  S+ P     AG S  
Sbjct: 243 AGDLAVAAHRLLGLRDVSRTDAIID-RDGTVHFLEVNVSPGLTETSLLPMAIEAAGRSLG 301

Query: 287 ELLLWMVEDA 296
           ++   +VE A
Sbjct: 302 DVFATLVERA 311


>gi|161779889|gb|ABX79436.1| VanC1 [Enterococcus gallinarum]
 gi|161779895|gb|ABX79439.1| VanC1 [Enterococcus gallinarum]
          Length = 343

 Score =  143 bits (360), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 98/331 (29%), Positives = 165/331 (49%), Gaps = 45/331 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD--------------------- 39
           +AVL GG S E  VSL+S  +   A++   ++V  I +                      
Sbjct: 4   IAVLFGGNSPEYSVSLASAASVIQAIDPLKYEVMTIGIAPTMDWYWYQGNLANVRNDTWL 63

Query: 40  -----------RSVGLVLAHLK--PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
                       S G +L   +  PD+ F VLHG +GEDG +Q +LEL+ +PY    + A
Sbjct: 64  EDHKNCHQLTFSSQGFILGEKRIVPDVLFPVLHGKYGEDGCIQGLLELMNLPYVGCHVAA 123

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIKPLKGGSSLG 140
           SAL M+K    Q+  + G+   P++L++R+  D   +         P  IKP + GSS G
Sbjct: 124 SALCMNKWLLHQLADTMGIASAPTLLLSRYENDPATIDRFIQDHGFPIFIKPNEAGSSKG 183

Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI-AVPKSD- 198
           I  +    ++   L  ++++ +G  +LI++ + GIE+ CG++G+  L +    A+   D 
Sbjct: 184 ITKVTDKTALQSAL--TTAFAYGSTVLIQKAIAGIEIGCGILGNEQLTIGACDAISLVDG 241

Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
           F+ +E KY  +++T  +PA +PL +  +++  A L ++ +G  G++R DF F      ++
Sbjct: 242 FFDFEEKYQLISATITVPAPLPLALESQIKEQAQLLYRNLGLTGLARIDF-FVTNQGAIY 300

Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
             EIN  PG T  S +P M A  G S+  L+
Sbjct: 301 LNEINTMPGFTGHSRYPAMMAEVGLSYEILV 331


>gi|67479935|gb|AAY67968.1| D-alanine:D-serine ligase [Enterococcus gallinarum]
          Length = 343

 Score =  143 bits (360), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 98/331 (29%), Positives = 165/331 (49%), Gaps = 45/331 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD--------------------- 39
           +AVL GG S E  VSL+S  +   A++   ++V  I +                      
Sbjct: 4   IAVLFGGNSPEYSVSLASAASVIQAIDPLKYEVMTIGIAPTMDWYLYQGNLANVRNDTWL 63

Query: 40  -----------RSVGLVLAHLK--PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
                       S G +L   +  PD+ F VLHG +GEDG +Q +LEL+ +PY    + A
Sbjct: 64  EDHKNCHQLTFSSQGFILGEKRIVPDVLFPVLHGKYGEDGCIQGLLELMNLPYVGCHVAA 123

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIKPLKGGSSLG 140
           SAL M+K    Q+  + G+   P++L++R+  D   +         P  IKP + GSS G
Sbjct: 124 SALCMNKWLLHQLADTMGIASAPTLLLSRYENDPATIDRFIQDHGFPIFIKPNEAGSSKG 183

Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI-AVPKSD- 198
           I  +    ++   L  ++++ +G  +LI++ + GIE+ CG++G+  L +    A+   D 
Sbjct: 184 ITKVTDKTALQSAL--TTAFAYGSTVLIQKAIAGIEIGCGILGNEQLTIGACDAISLVDG 241

Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
           F+ +E KY  +++T  +PA +PL +  +++  A L ++ +G  G++R DF F      ++
Sbjct: 242 FFDFEEKYQLISATITVPAPLPLALESQIKEQAQLLYRNLGLTGLARIDF-FVTNQGAIY 300

Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
             EIN  PG T  S +P M A  G S+  L+
Sbjct: 301 LNEINTMPGFTGHSRYPAMMAEVGLSYEILV 331


>gi|295132690|ref|YP_003583366.1| D-alanyl-alanine synthetase A [Zunongwangia profunda SM-A87]
 gi|294980705|gb|ADF51170.1| D-alanyl-alanine synthetase A [Zunongwangia profunda SM-A87]
          Length = 324

 Score =  143 bits (360), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 99/327 (30%), Positives = 168/327 (51%), Gaps = 44/327 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           +A+ MGG SSE  +S++SG      L+   ++  ++ + ++   V+AH            
Sbjct: 5   IAIAMGGFSSEYRISINSGNMVYENLDRNKYEPYRVHILQNEWFVVAHDDTPYPINKNDF 64

Query: 49  --------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
                   +K D  FN +HG  GE+GL+QA LELL IP T +    SAL+ +K     V+
Sbjct: 65  TVKMGTEIIKFDCVFNTIHGTPGENGLLQAYLELLNIPQTAANHYQSALTFNKRDLISVL 124

Query: 101 SSCGVPVCPSILVNRFTMDSQHLISPPYVIKPL---------KGGSSLGIIVIKKDQSIP 151
              G+    +  +N+     +  I+P  +IK +         + GSS GI  +K  Q   
Sbjct: 125 KPYGIKSAKNYFLNK-----EDAINPDEIIKKVGLPCFVKANRAGSSFGITKVK--QKNE 177

Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYS 207
           L     +++   D+ +IE ++DG E++ GV+       +L VTEI V +++F+ YE KY 
Sbjct: 178 LYRAAQNAFQEDDEAIIESFLDGTEVSVGVITYNREIIALPVTEI-VSENEFFDYEAKYL 236

Query: 208 SLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPG 267
              S  + PA+I     K+VQ +A L ++ +  +G +RS+F+F   + +  ++E+N  PG
Sbjct: 237 G-KSQEITPARISEKDTKKVQEIAKLIYKKLKMKGFTRSEFIFH--NGEPHFIEMNTTPG 293

Query: 268 MTPVSIFPEMAAYAGYSFRELLLWMVE 294
           ++  SI P+ AA AG S ++L    +E
Sbjct: 294 LSQASILPQQAAKAGISLQDLYGSAIE 320


>gi|170781258|ref|YP_001709590.1| D-alanine--D-alanine ligase [Clavibacter michiganensis subsp.
           sepedonicus]
 gi|169155826|emb|CAQ00951.1| D-alanine--D-alanine ligase [Clavibacter michiganensis subsp.
           sepedonicus]
          Length = 335

 Score =  143 bits (360), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 108/325 (33%), Positives = 161/325 (49%), Gaps = 43/325 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSV------------------ 42
           ++VL GG S ER+VS++S      AL   G +V  +D                       
Sbjct: 3   ISVLFGGESEERDVSIASAAQVVPALRQLGHEVVAVDTAHGALDAAAEARILTPDVGLHP 62

Query: 43  --------------GLVL---AHLK-PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84
                         G VL   A L+  DL F  LHG  GEDG +QA+LEL  IP+T SG 
Sbjct: 63  PTSAELATASAGGSGAVLRLPADLRDSDLVFLALHGGSGEDGRLQALLELAGIPFTGSGS 122

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
           L SAL+MDK  +K ++ + GV   P  L++      +  +  P V+KP   GS++G+ V+
Sbjct: 123 LGSALAMDKDVAKTLLRAGGV-RTPDWLIDPEPGAVEAALGFPVVVKPTGQGSTVGLSVV 181

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYEL 204
           +    +P  L  ++   HG  +++E++V G ELT GV+   +L V EI VP  + ++Y  
Sbjct: 182 RAAADLPAALELAA--RHG-TVMVERFVRGRELTVGVLDGEALAVGEIGVPVDEAFTYAA 238

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW-LEIN 263
           KY +       PA +P ++ +E +  A  AH+ +   G SRSDF  D     + W +E N
Sbjct: 239 KYQAGAIAETFPADLPSEVAEEARAAALAAHRILRLDGYSRSDFRLD--DAGILWIIEAN 296

Query: 264 VQPGMTPVSIFPEMAAYAGYSFREL 288
             PG+T  S+ P+ AA  G  + EL
Sbjct: 297 SLPGLTATSLLPQSAAAVGIGYAEL 321


>gi|325675906|ref|ZP_08155590.1| D-alanine-D-alanine ligase [Rhodococcus equi ATCC 33707]
 gi|325553877|gb|EGD23555.1| D-alanine-D-alanine ligase [Rhodococcus equi ATCC 33707]
          Length = 368

 Score =  143 bits (360), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 91/272 (33%), Positives = 150/272 (55%), Gaps = 20/272 (7%)

Query: 39  DRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQ 98
           D+  G  LA +  D+ F VLHG +GEDG +Q +LEL  IPY   G+LASA  MDK  +K+
Sbjct: 95  DKQAGQALASV--DVVFPVLHGAYGEDGTIQGLLELAGIPYVGPGVLASAAGMDKEFTKK 152

Query: 99  VVSSCGVPVCPSILV----NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154
           ++++ G+PV   +++    +  T + +  +  P  +KP +GGSS+GI  +  D S   D 
Sbjct: 153 LLAAEGLPVGFQVVLRPGTSTVTDEQKQQLGLPVFVKPARGGSSIGITRV-ADWS-QFDA 210

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVM----GDASLD-VTEIAVPKSD-----FYSYEL 204
             + + +H  ++++E  + G E+ CGV+    GD     V EI +P +D     FY ++ 
Sbjct: 211 AVAVARSHDPKVIVESAIVGREVECGVLEFPDGDVRASVVAEIRMPDTDGDESAFYDFDT 270

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           KY        +PAK+  D+ ++++ LA  A +A+ C+G++R DF     +      EIN 
Sbjct: 271 KYLDDVCEFDVPAKLDDDVSEQIRALAVRAFRALDCQGLARVDFFV--TADGPVINEINT 328

Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            PG T +S++P M   AG  +  L+  +V+ A
Sbjct: 329 MPGFTSISMYPRMWQAAGVEYETLVSTLVDTA 360


>gi|154508227|ref|ZP_02043869.1| hypothetical protein ACTODO_00721 [Actinomyces odontolyticus ATCC
           17982]
 gi|153797861|gb|EDN80281.1| hypothetical protein ACTODO_00721 [Actinomyces odontolyticus ATCC
           17982]
          Length = 342

 Score =  143 bits (360), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 89/303 (29%), Positives = 167/303 (55%), Gaps = 23/303 (7%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62
           ++ GG++ ER+VS+ SG+  A+ L   G+ V   DVD S+   ++   PD+ + ++HG+ 
Sbjct: 7   IIAGGLTHERDVSVRSGRRVANILTQFGYDVRISDVDASLAEAISSFSPDVVWPLVHGSI 66

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP-----VCPSILVNRFT 117
           GEDG +Q+ LE L IP+  S  + + L+ +K  +K ++ S G+        P  +  +  
Sbjct: 67  GEDGSLQSFLESLGIPFVGSSSVQAMLASNKPTAKALLGSAGLATPGWVTLPQAIFRQ-- 124

Query: 118 MDSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           + + H++S        P VIKP  GGS+LGI   +  +++   ++   ++ +G +L++EQ
Sbjct: 125 LGASHVLSALEGSVSFPVVIKPTDGGSALGISTAQDAKALRRAMVD--AFAYGQRLMVEQ 182

Query: 171 YVDGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE 226
            +DG ++   V+    G  +L   E++  +   Y Y+ +Y++  + + +PA++  ++  +
Sbjct: 183 RIDGRDVAVSVVDLWDGPVALPPVEVSTDRG-RYDYDARYTTDETEYFVPARLSDELLAD 241

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA-AYAGYSF 285
           +Q  A  AH  +G R +SR DF+ D      ++++ NV PGMT  S+ P+ A A    SF
Sbjct: 242 LQAAAVEAHTTLGLRDLSRMDFVVDD-EGTCWFIDANVAPGMTDTSLLPQAADALEDSSF 300

Query: 286 REL 288
            +L
Sbjct: 301 AQL 303


>gi|229075051|ref|ZP_04208053.1| D-alanine--D-alanine ligase [Bacillus cereus Rock4-18]
 gi|229103218|ref|ZP_04233903.1| D-alanine--D-alanine ligase [Bacillus cereus Rock3-28]
 gi|228680242|gb|EEL34434.1| D-alanine--D-alanine ligase [Bacillus cereus Rock3-28]
 gi|228708108|gb|EEL60279.1| D-alanine--D-alanine ligase [Bacillus cereus Rock4-18]
          Length = 304

 Score =  143 bits (360), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 89/305 (29%), Positives = 167/305 (54%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGG+SSE++VS+ +G    + L+   +++  I ++  + L+      D A   LHG
Sbjct: 3   IGVIMGGVSSEKQVSIMTGNEMIAHLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG VQ  LE L IPY+ S +L+S + MDK  SK+++   GV     I + +     
Sbjct: 63  KYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNISKKILRYEGVETPDWIELTKMADLK 122

Query: 121 QHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS-SWNHGDQLLIEQYVDGIE 176
              +     P V+KP  GGSS+G+ ++  D++  + +L++   W+   +++IE+Y+ G E
Sbjct: 123 LDDLDKLGFPLVVKPNSGGSSVGVKIV-NDKNELISMLETVFEWDS--EVVIEKYIKGDE 179

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +TC +     L +  I    ++F+ Y  KY  +++   +  ++P +I + V + +   ++
Sbjct: 180 ITCSIFDGKQLPIVSIR-HAAEFFDYNAKYDDVSTIEEV-IELPTEIKERVNKASLACYK 237

Query: 237 AIGCRGISRSDFLF-DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           A+ C   +R D +  D +    + +E+N  PGMT  S+ P+ A  AG ++ +LL  ++E 
Sbjct: 238 ALKCSVYARVDMMVKDGIP---YVMEVNTLPGMTQSSLLPKSADAAGINYSKLLDMIIET 294

Query: 296 ASCLR 300
           +  +R
Sbjct: 295 SLRVR 299


>gi|312140476|ref|YP_004007812.1| d-alanine-d-alanine ligase [Rhodococcus equi 103S]
 gi|311889815|emb|CBH49132.1| D-alanine-D-alanine ligase [Rhodococcus equi 103S]
          Length = 368

 Score =  143 bits (360), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 91/272 (33%), Positives = 150/272 (55%), Gaps = 20/272 (7%)

Query: 39  DRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQ 98
           D+  G  LA +  D+ F VLHG +GEDG +Q +LEL  IPY   G+LASA  MDK  +K+
Sbjct: 95  DKQAGQALASV--DVVFPVLHGAYGEDGTIQGLLELAGIPYVGPGVLASAAGMDKEFTKK 152

Query: 99  VVSSCGVPVCPSILV----NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154
           ++++ G+PV   +++    +  T + +  +  P  +KP +GGSS+GI  +  D S   D 
Sbjct: 153 LLAAEGLPVGFQVVLRPGTSTVTDEQKQQLGLPVFVKPARGGSSIGITRV-ADWS-QFDA 210

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVM----GDASLD-VTEIAVPKSD-----FYSYEL 204
             + + +H  ++++E  + G E+ CGV+    GD     V EI +P +D     FY ++ 
Sbjct: 211 AVAVARSHDPKVIVESAIVGREVECGVLEFPDGDVRASVVAEIRMPDTDGDESAFYDFDT 270

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           KY        +PAK+  D+ ++++ LA  A +A+ C+G++R DF     +      EIN 
Sbjct: 271 KYLDDVCEFDVPAKLDDDVSEQIRALAVRAFRALDCQGLARVDFFV--TADGPVINEINT 328

Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            PG T +S++P M   AG  +  L+  +V+ A
Sbjct: 329 MPGFTSISMYPRMWQAAGVEYETLVSTLVDTA 360


>gi|22298066|ref|NP_681313.1| D-alanyl-alanine synthetase A [Thermosynechococcus elongatus BP-1]
 gi|39930889|sp|Q8DLH0|DDL_THEEB RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|22294244|dbj|BAC08075.1| D-alanine:D-alanine ligase [Thermosynechococcus elongatus BP-1]
          Length = 343

 Score =  143 bits (360), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 90/259 (34%), Positives = 146/259 (56%), Gaps = 20/259 (7%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+ F ++HG  GEDG +Q +LEL++ PY  SG+ ASA+ MDK+  K V  + G+P  P +
Sbjct: 82  DVWFPIVHGPNGEDGTIQGLLELMQRPYVGSGVAASAIGMDKILMKTVFGAIGLPQVPYV 141

Query: 112 LVNRFTMDS-----QHL-------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
            + R  + S      HL       +  P  +KP   GSS+GI   K  Q +   L  ++ 
Sbjct: 142 ALQRSDLWSDPCRYNHLCDRIETELGYPCFVKPANLGSSVGISKAKNRQQLTTALEVAAE 201

Query: 160 WNHGDQLLIEQYVDGIELTCGVMGD----ASLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215
            +   ++++E  V   EL C V+G+    AS+ V EI    S+FY YE KY+   +   +
Sbjct: 202 LDR--RIIVEAGVVARELECAVLGNDKPQASV-VGEITY-SSEFYDYETKYTDGRAQLHI 257

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275
           PA+IP  + ++++ L+  A QA+G  G++R DF + P + +V   E+N  PG T +S++P
Sbjct: 258 PAEIPPAVSEQIRSLSLQAFQALGAAGLARFDFFYVPSTGEVLINEVNTLPGFTALSMYP 317

Query: 276 EMAAYAGYSFRELLLWMVE 294
           ++ A +G SF EL+  +V+
Sbjct: 318 QLWAASGLSFPELVHRLVQ 336


>gi|229161508|ref|ZP_04289489.1| D-alanine--D-alanine ligase [Bacillus cereus R309803]
 gi|228622045|gb|EEK78890.1| D-alanine--D-alanine ligase [Bacillus cereus R309803]
          Length = 304

 Score =  143 bits (360), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 92/305 (30%), Positives = 167/305 (54%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGG+SSE++VS+ +G    + L+ + +++  I ++  + L+      D A   LHG
Sbjct: 3   IGVIMGGVSSEKQVSIMTGNEMIAHLDKSKYEIVPIMLNEKMDLIEKAKDIDFALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---FT 117
            +GEDG VQ  LE L IPY+ S +L+S + MDK  SK+++   GV     I + +     
Sbjct: 63  KYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNLSKKILRYEGVETPDWIELTKMEDLN 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGI-IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
           ++    +  P V+KP  GGSS+G+ IV  K++ I + L     W+   +++IE+Y+ G E
Sbjct: 123 LEELEKLGFPLVVKPNSGGSSVGVKIVYNKNELISM-LETVFEWDS--EVVIEKYIKGEE 179

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +TC +     L +  I    ++F+ Y  KY   ++   +  ++P +I + V + +   ++
Sbjct: 180 ITCSIFDGKQLPIISIR-HAAEFFDYNAKYDDTSTIEEV-IELPGEIKERVNKASLACYK 237

Query: 237 AIGCRGISRSDFLF-DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           A+ C   +R D +  D +    + +E+N  PGMT  S+ P+ A  AG ++ +LL  ++E 
Sbjct: 238 ALKCSVYARVDMMVKDGIP---YVMEVNTLPGMTQSSLLPKSADAAGINYSKLLDMIIET 294

Query: 296 ASCLR 300
           +  +R
Sbjct: 295 SLRVR 299


>gi|72162041|ref|YP_289698.1| D-alanine--D-alanine ligase [Thermobifida fusca YX]
 gi|71915773|gb|AAZ55675.1| D-alanine--D-alanine ligase [Thermobifida fusca YX]
          Length = 329

 Score =  143 bits (360), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 100/304 (32%), Positives = 153/304 (50%), Gaps = 22/304 (7%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62
           VL GG+S E EVS+ SG+  A AL     +V   DV   +  +L    P + F VLHG  
Sbjct: 22  VLAGGLSPEHEVSVRSGRRVAEALRRLDVEVQTCDVGPELLNLLTDDPPQVVFPVLHGTS 81

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--FTMDS 120
           GEDG ++ +LEL  +PY  +   A   +  K  +K +V+  G+ V   + + +  F    
Sbjct: 82  GEDGAIREVLELAGVPYVGARPDACRATYAKPIAKTLVAEQGIAVPRGLALPKSLFHDLG 141

Query: 121 QH--------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
            H        ++  P  +KP +GGS+ G   + +  ++P  L+  S + + D  LIEQ V
Sbjct: 142 AHAVLERIVAMLGLPLFVKPAQGGSAFGATAVTEASALPAALV--SCFAYSDTALIEQQV 199

Query: 173 DGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
            G+E+  GV+    G  +L   EI VP    Y Y  +Y++  +    PA++  ++ +   
Sbjct: 200 TGVEVAVGVLDLGDGPVALPAVEI-VPDGGVYDYAARYTAGRTEFFSPARLSDEVARAAA 258

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF--- 285
             A  AH+A+G R +SR+D + D   R V++LE+NV PGMT  S  P     AG  F   
Sbjct: 259 DAAVTAHRALGLRDVSRTDLIIDETGR-VYFLEVNVSPGMTDTSTLPLAVEAAGMDFAVV 317

Query: 286 -REL 288
            REL
Sbjct: 318 CREL 321


>gi|304310630|ref|YP_003810228.1| D-alanine-D-alanine ligase [gamma proteobacterium HdN1]
 gi|301796363|emb|CBL44571.1| D-alanine-D-alanine ligase [gamma proteobacterium HdN1]
          Length = 362

 Score =  142 bits (359), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 99/343 (28%), Positives = 161/343 (46%), Gaps = 53/343 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           +A++ GG S+E EVS+ S +  A AL+ + F +  + V +                    
Sbjct: 7   VALVFGGRSAEHEVSIRSARNIAEALDKSRFILELLGVSKQGDWFYFSQAKDLYEFDTIC 66

Query: 47  -----AHLKP---------------------DLAFNVLHGNFGEDGLVQAILELLEIPYT 80
                A  KP                     D+AF +LHG +GEDG VQ + ++L +PY 
Sbjct: 67  STQPPASGKPVLFGSRQARPIMTTADDTISVDVAFPILHGTYGEDGCVQGLFKMLNLPYV 126

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR-----FTMDSQHLISPPYVIKPLKG 135
              +++SA  MDK   K++    G+P    +LV R     F +  + L   P  IKP   
Sbjct: 127 GCDVMSSATGMDKDIMKRLFLQAGIPTADYVLVTRTDTPDFPLYREKL-GLPMFIKPANA 185

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA-- 193
           GSS+G+  +K +      L  +  ++   +++IE+Y+ G E+ C V+G         A  
Sbjct: 186 GSSIGVHKVKTEAEFGPALEDALRYDR--KVIIERYIQGREIECSVLGTTDAPKASTAGE 243

Query: 194 -VPKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
            +   DFYSYE KY   N     +PAKI       +Q LA     A+GC G++R DF   
Sbjct: 244 VITTHDFYSYEAKYLDENGARTEIPAKIDAATLARIQALAEKTFTAMGCFGMARVDFFLT 303

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             S  ++  EIN  PG T +S++P+M  ++G ++ +L+  +++
Sbjct: 304 E-SGALYVNEINTLPGFTNISMYPKMWEHSGVTYTDLITRLID 345


>gi|67922156|ref|ZP_00515671.1| D-alanine--D-alanine ligase [Crocosphaera watsonii WH 8501]
 gi|67856056|gb|EAM51300.1| D-alanine--D-alanine ligase [Crocosphaera watsonii WH 8501]
          Length = 349

 Score =  142 bits (359), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 103/339 (30%), Positives = 165/339 (48%), Gaps = 55/339 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALE----DAGFKVSQIDVDRSVGLVLA--------- 47
           + +L GG S E EVS++S +A A AL+    D  + V  + + ++ G+ +A         
Sbjct: 6   IGLLFGGRSGEHEVSINSAQAIAQALQTGENDHKYDVIPVYIQKN-GVWIAGETADEVLE 64

Query: 48  ----------------HLKPDLA-----FNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
                              P+L      F VLHG  GEDG +Q +L L+++P+  SG+L 
Sbjct: 65  SKTPLSPEDTNPYQLWQFPPELQEVEVWFPVLHGPNGEDGTIQGLLTLMQVPFVGSGVLG 124

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP------------PYVIKPLK 134
           SA+ MDK+  K   +  G+P      V R  + S   I P            P  +KP  
Sbjct: 125 SAVGMDKIAMKMAFAQAGLPQVKYKAVERSQIWSNPCIFPKLCDDIEAGLGYPCFVKPAN 184

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD----ASLDVT 190
            GSS+GI   +    +   L  ++S++   +++IE  V   EL C V+G+    AS+ V 
Sbjct: 185 LGSSVGIAKARSHSELEAALDSAASYDR--RIVIEAGVTARELECAVLGNDNPKASV-VG 241

Query: 191 EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
           EI    SDFY YE KY+   S   +PA +P  + K++Q +A  A + +   G++R DF +
Sbjct: 242 EITF-DSDFYDYETKYTEGRSQIHIPASLPEKVIKQIQEMAIQAFKTVDASGLARVDFFY 300

Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
              ++ ++  EIN  PG T  S++P++    G SF +L+
Sbjct: 301 VEETQAIYLNEINTLPGFTKFSMYPQLWQATGISFEQLV 339


>gi|330470823|ref|YP_004408566.1| D-alanine--D-alanine ligase [Verrucosispora maris AB-18-032]
 gi|328813794|gb|AEB47966.1| D-alanine--D-alanine ligase [Verrucosispora maris AB-18-032]
          Length = 320

 Score =  142 bits (359), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 100/315 (31%), Positives = 159/315 (50%), Gaps = 24/315 (7%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62
           VL GG+S ER+VSL SG+    AL   G +    D D ++   LA   PD     LHG  
Sbjct: 13  VLAGGLSYERDVSLRSGRRVLDALRSVGVEAELRDADVALLPALAADPPDAVVIALHGAT 72

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV--PVCPSILVNRFT--- 117
           GEDG ++ +L+L  +PY      AS L+ DK  +K V+   G+  P   ++  +RF+   
Sbjct: 73  GEDGSLRGVLDLCGVPYVGCDARASRLAWDKPSAKAVLREAGIATPDWVALPHDRFSELG 132

Query: 118 --------MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
                   +D   L   P ++KP +GGS LG  V++   ++P  ++   +++     L+E
Sbjct: 133 AVAVLDRIVDRLGL---PLMVKPAQGGSGLGAAVVRDAAALPAAMVGCFAYDP--TALVE 187

Query: 170 QYVDGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
           +YV G+++   V+    G  +L   EI VP++  Y Y  +Y++  +T   PA++   + +
Sbjct: 188 RYVSGMDVAVSVIDLGDGPQALPPVEI-VPRNGVYDYAARYTAGRTTWHTPARLEPAVAE 246

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285
           +V  +A  AH A+G R +SR D + D        LE+NV PGMT  S+ P     AG  F
Sbjct: 247 KVGEVALAAHTALGLRDLSRVDLIVDSAGLP-HVLEVNVSPGMTETSLLPLAVQAAGLDF 305

Query: 286 RELLLWMVEDASCLR 300
             ++  +V  A   R
Sbjct: 306 GRVIGSLVARAVTRR 320


>gi|293191001|ref|ZP_06609045.1| D-alanine--D-alanine ligase B [Actinomyces odontolyticus F0309]
 gi|292820688|gb|EFF79654.1| D-alanine--D-alanine ligase B [Actinomyces odontolyticus F0309]
          Length = 342

 Score =  142 bits (359), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 90/309 (29%), Positives = 170/309 (55%), Gaps = 23/309 (7%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62
           ++ GG++ ER+VS+ SG+  A+ L   G+ V   DVD S+   ++   PD+ + ++HG+ 
Sbjct: 7   IIAGGLTHERDVSVRSGRRVANILTQFGYDVRISDVDASLADAISSFSPDVVWPLVHGSI 66

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP-----VCPSILVNRFT 117
           GEDG +Q+ LE L IP+  S  + + L+ +K  +K ++ S G+        P  +  +  
Sbjct: 67  GEDGSLQSFLESLGIPFVGSSSVQAMLASNKPTAKALLGSAGLATPGWVTLPQAIFRQ-- 124

Query: 118 MDSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           + + H++S        P VIKP  GGS+LGI   +  +++   ++   ++ +G +L++EQ
Sbjct: 125 LGASHVLSALEGSVSFPVVIKPTDGGSALGISTAQDAKALRRAMVD--AFAYGQRLMVEQ 182

Query: 171 YVDGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE 226
            +DG ++   V+    G  +L   E++  +   Y Y+ +Y++  + + +PA++  ++  +
Sbjct: 183 RIDGRDVAVSVVDLWDGPVALPPVEVSTDRG-RYDYDARYTTDETEYFVPARLSDELLAD 241

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA-AYAGYSF 285
           +Q  A  AH  +G R +SR DF+ D      ++++ NV PGMT  S+ P+ A A    SF
Sbjct: 242 LQAAAVEAHTTLGLRDLSRMDFVVDD-EGTCWFIDANVAPGMTDTSLLPQAADALEDSSF 300

Query: 286 RELLLWMVE 294
            +L   +V+
Sbjct: 301 AQLCADIVD 309


>gi|320105501|ref|YP_004181091.1| D-alanine/D-alanine ligase [Terriglobus saanensis SP1PR4]
 gi|319924022|gb|ADV81097.1| D-alanine/D-alanine ligase [Terriglobus saanensis SP1PR4]
          Length = 375

 Score =  142 bits (359), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 98/344 (28%), Positives = 166/344 (48%), Gaps = 57/344 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSV-------------GLVLA 47
           + +L GG S E EVSL S  +   A++   + V  I +++               G  + 
Sbjct: 7   VGILFGGRSGEHEVSLRSAASILDAIDRKKYDVVPIGINKQGKWLNGPDAQNLLGGETVK 66

Query: 48  HL--------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87
            L                    K D+ F VLHG FGEDG +Q + EL ++ Y  SG+L S
Sbjct: 67  QLAATAETGLSIHAAAAGTETSKLDVVFPVLHGTFGEDGTIQGLFELADVAYVGSGVLGS 126

Query: 88  ALSMDKMRSKQVVSSCGVPVCPSILV---------NRFTMDSQHLISPPYVIKPLKGGSS 138
           A  MDK   K++ ++  +P+   + +          + T   +  +  P  +KP   GSS
Sbjct: 127 AAGMDKDAMKRMFAASKLPMVKHVTLLRSEWAASKRKCTTQIEAALKYPLFVKPANLGSS 186

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI-----ELTCGVMGDASLDVTEIA 193
           +GI  +     +P  + +++ ++   +++IEQ V G      EL   V+G+ + + + + 
Sbjct: 187 VGISKVHDRSELPKAMDEAARFDR--KIVIEQGVGGKRGKARELEVAVLGNDTPEASVVG 244

Query: 194 --VPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
             VP  +FY Y  KY + +++   +PAKI     K+++ +A  A +A  C G++R DFL 
Sbjct: 245 EIVPDREFYDYASKYDATSTSEPQIPAKITKAEAKQIREMAIRAFKACDCSGLARVDFLM 304

Query: 251 DPLS-----RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           DP S      K++  EIN  PG T +S++P++    G S+REL+
Sbjct: 305 DPPSATGKPAKIYLNEINTMPGFTSISMYPKLWEATGVSYRELI 348


>gi|332672285|ref|YP_004455293.1| D-alanine--D-alanine ligase [Cellulomonas fimi ATCC 484]
 gi|332341323|gb|AEE47906.1| D-alanine--D-alanine ligase [Cellulomonas fimi ATCC 484]
          Length = 315

 Score =  142 bits (359), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 99/300 (33%), Positives = 160/300 (53%), Gaps = 15/300 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG+S ER+VSL SG+  A AL   G +VS  DVD  +   L  L+PDL + +LHG
Sbjct: 9   VAVLAGGLSHERDVSLRSGRRVAEALRSVGVEVSVHDVDADLVPALTDLRPDLVWPLLHG 68

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP-----VCPSILVNR 115
             GEDG V+ +++LL +    +G  AS ++  K  +K VV+  G+        P  L   
Sbjct: 69  ATGEDGSVRDVVQLLGLRLLGTGPRASRVAWSKPIAKTVVARAGLATPEFVTLPQSLFRE 128

Query: 116 F----TMDS-QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                 +D+    +  P V+KP +GGS+LG+ ++     +P  ++   +++  D  LIE+
Sbjct: 129 LGAGRVLDAVVARLGLPLVVKPSRGGSALGVTLVTDADDLPRAMVDCFAYS--DTALIER 186

Query: 171 YVDGIELTCGVM--GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
            V G E+   V+  GD  + +  + +     Y Y+ +Y+     +  PA++   + + V 
Sbjct: 187 AVVGTEVAVSVVDTGDGPVPLPAVEIVTDGPYDYDARYNPGRVEYFTPARLDAVMARRVG 246

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
            +A  AH A+G   +SR+D + D      F LE+NV PGMT  S+FP+ A  AG++  +L
Sbjct: 247 EVAVAAHTALGLARLSRTDLVVDAEGTPWF-LEVNVAPGMTETSLFPQAAEGAGHNLGDL 305


>gi|78212393|ref|YP_381172.1| D-alanine--D-alanine ligase [Synechococcus sp. CC9605]
 gi|123578519|sp|Q3ALB5|DDL_SYNSC RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|78196852|gb|ABB34617.1| D-alanine--D-alanine ligase [Synechococcus sp. CC9605]
          Length = 350

 Score =  142 bits (359), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 81/258 (31%), Positives = 143/258 (55%), Gaps = 15/258 (5%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           DL + VLHG  GEDG +Q + +L   P+  +G+L SA+SMDK   K   SS G+   P +
Sbjct: 93  DLWYPVLHGPNGEDGTIQGLFQLTGKPFVGAGVLGSAVSMDKQAMKSAFSSAGLSQVPYV 152

Query: 112 LVNRFTMDS-----------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160
            ++   ++            +  ++ P  +KP   GSS+GI  ++  Q +   L Q+++ 
Sbjct: 153 ALHASELEDAKSRSALLDRIERELNYPCFVKPANLGSSVGISKVRSRQELEAGLEQAAAL 212

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK--SDFYSYELKYSSLNSTHVLPAK 218
           +   +L++EQ V+  E+ C V+G  +L+ + I   +  +D+Y YE KY++  ST ++PA 
Sbjct: 213 D--PRLVVEQGVNAREVECAVLGRRTLEASVIGEVRFDADWYDYETKYTAGRSTTLIPAP 270

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278
           +P  +   ++  A  A  A+G  G+SR DF +D  + +++  EIN  PG T  S+FP + 
Sbjct: 271 LPDPVRDRIREQALQACAAVGVHGMSRVDFFYDETNDQLWINEINTLPGFTAQSMFPMLW 330

Query: 279 AYAGYSFRELLLWMVEDA 296
           A +G +  +L+  +++ A
Sbjct: 331 AASGVTLEQLVHKLIQTA 348


>gi|229133446|ref|ZP_04262273.1| D-alanine--D-alanine ligase [Bacillus cereus BDRD-ST196]
 gi|228649846|gb|EEL05854.1| D-alanine--D-alanine ligase [Bacillus cereus BDRD-ST196]
          Length = 304

 Score =  142 bits (359), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 92/304 (30%), Positives = 164/304 (53%), Gaps = 11/304 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGG+SSE++VS+ +G    + L+ + +++  I ++  + L+      D A   LHG
Sbjct: 3   IGVIMGGVSSEKQVSIMTGNEMIAHLDKSKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---FT 117
            +GEDG VQ  LE L IPY+ S +L+S + MDK  SK+++   GV     I + +     
Sbjct: 63  KYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNISKKILRYEGVETPDWIELTKMEDLK 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGI-IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
           ++    I  P V+KP  GGSS+G+ IV  K++ I + L     W+   +++IE+Y+ G E
Sbjct: 123 LEELDKIGFPLVVKPNSGGSSVGVKIVYDKNELISM-LETVFEWDS--EVVIEKYIKGDE 179

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +TC +     L +  I    + F+ Y  KY   ++   +  ++P +I + V + +   ++
Sbjct: 180 ITCSIFDGQQLPIISIR-HAAVFFDYNAKYDDTSTVEEV-IELPAEIKERVNKASLACYK 237

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           A+ C   +R D +        + +E+N  PGMT  S+ P+ A  AG ++ +LL  ++E +
Sbjct: 238 ALKCSVYARVDMMVK--EGIPYVMEVNTLPGMTQSSLLPKSAEAAGINYSKLLDMIIETS 295

Query: 297 SCLR 300
             +R
Sbjct: 296 LKVR 299


>gi|213964603|ref|ZP_03392803.1| D-alanine--D-alanine ligase [Corynebacterium amycolatum SK46]
 gi|213952796|gb|EEB64178.1| D-alanine--D-alanine ligase [Corynebacterium amycolatum SK46]
          Length = 367

 Score =  142 bits (359), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 89/263 (33%), Positives = 142/263 (53%), Gaps = 21/263 (7%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+ F VLHG  GEDG +Q + EL  I Y   G+LASA  MDK R+K ++ + G+P+   +
Sbjct: 111 DVIFPVLHGPHGEDGTIQGLFELSGIAYVGPGVLASAAGMDKERTKNLLQAAGLPIGKQV 170

Query: 112 LVN---RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168
           +++     + + +  +  P  +KP +GGSS+GI  +  D    LD     +  H  ++++
Sbjct: 171 VLHVGESLSDEDKETLGLPVFVKPARGGSSIGISRV--DDWANLDAAVELAREHDWKVIV 228

Query: 169 EQYVDGIELTCGVM--GDASLDVTEIAVPK-------SD--FYSYELKYSSLNSTHVLPA 217
           E  VDG E+  GV+   D SL   +++VP        SD  FY +E KY     +  +PA
Sbjct: 229 EAGVDGAEVEIGVLQRADGSL---QVSVPSLLRGTEDSDEGFYGFETKYLDDVVSAQIPA 285

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
           ++P D+ K +   A  A +A+G  G++R DF            E+N  PG TP+S++P+M
Sbjct: 286 ELPKDVLKALDTDARRAFRALGSDGLTRVDFFV--TDNGPIINEVNTMPGFTPISMYPQM 343

Query: 278 AAYAGYSFRELLLWMVEDASCLR 300
            A +G ++ ELL  ++E A   R
Sbjct: 344 FAASGVAYEELLSALIERALVAR 366


>gi|260206305|ref|ZP_05773796.1| D-alanyl-alanine synthetase A [Mycobacterium tuberculosis K85]
          Length = 379

 Score =  142 bits (359), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 88/263 (33%), Positives = 144/263 (54%), Gaps = 20/263 (7%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+ F VLHG +GEDG +Q +LEL  +PY  +G+LASA+ MDK  +K+++++ G+PV    
Sbjct: 111 DVVFPVLHGPYGEDGTIQGLLELAGVPYVGAGVLASAVGMDKEFTKKLLAADGLPVGAYA 170

Query: 112 LVN--RFTMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL 167
           ++   R T+  Q    +  P  +KP +GGSS+G+  +     +P  + ++    H  +++
Sbjct: 171 VLRPPRSTLHRQECERLGLPVFVKPARGGSSIGVSRVSSWDQLPAAVARAR--RHDPKVI 228

Query: 168 IEQYVDGIELTCGV--MGDASLDVT---EIAVP-----KSDFYSYELKYSSLNSTHVLPA 217
           +E  + G EL CGV  M D +L+ +   EI V      +  FY +  KY    +   +PA
Sbjct: 229 VEAAISGRELECGVLEMPDGTLEASTLGEIRVAGVRGREDSFYDFATKYLDDAAELDVPA 288

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP----LSRKVFWLEINVQPGMTPVSI 273
           K+   + + +++LA  A  AI CRG++R DF        ++      EIN  PG T +S+
Sbjct: 289 KVDDQVAEAIRQLAIRAFAAIDCRGLARVDFFLTDDGPVINDGPVINEINTMPGFTTISM 348

Query: 274 FPEMAAYAGYSFRELLLWMVEDA 296
           +P M A +G  +  LL  M+E A
Sbjct: 349 YPRMWAASGVDYPTLLATMIETA 371


>gi|163814801|ref|ZP_02206190.1| hypothetical protein COPEUT_00952 [Coprococcus eutactus ATCC 27759]
 gi|158450436|gb|EDP27431.1| hypothetical protein COPEUT_00952 [Coprococcus eutactus ATCC 27759]
          Length = 350

 Score =  142 bits (359), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 103/343 (30%), Positives = 167/343 (48%), Gaps = 52/343 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSV------------------ 42
           + V+ GG SSE EVS  S +  A A++   + ++ + + +                    
Sbjct: 6   LVVIFGGRSSEHEVSCISVQTVAKAVDTEKYNMTLVGITKEGKWLRADNIESIADGSWRD 65

Query: 43  GLVLAHLKPDLA-------------------FNVLHGNFGEDGLVQAILELLEIPYTHSG 83
           G V A + PD                     F VLHG +GEDG +Q + E+ +IPY   G
Sbjct: 66  GKVTAVISPDTTKELLILNGDKVERQRVDVIFPVLHGMYGEDGTIQGLFEMADIPYVGCG 125

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCP--SILVNRF-----TMDS-QHLISPPYVIKPLKG 135
           +LASA SMDK  +K +V + GV       +L   F      MD  +  +  P  +KP K 
Sbjct: 126 VLASAASMDKFYTKIIVDNVGVRQAKFVPVLAEDFGDLDAAMDRVETGLDYPVFVKPSKA 185

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG----DASLDVTE 191
           GSS G+      QS+   L ++  +++  ++L+E+ + G EL CGV+G      +  V E
Sbjct: 186 GSSKGVNKAVDRQSLKSALEEAVKFDN--KILVEETIVGRELECGVLGYKDNTQASGVGE 243

Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
           I +  ++FY ++ KY++  S  V+ A IP +I  E++  A    +A+   G+SR DF  +
Sbjct: 244 I-LAAAEFYDFDAKYNNAESKTVIGADIPAEIEAEIREDAVKIFRALDGFGLSRVDFFLE 302

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             + KV + EIN  PG T +S++P +    GY   +L+  ++E
Sbjct: 303 KGTNKVVFNEINTLPGFTGISMYPMLWNAKGYDIGKLVTTLIE 345


>gi|254967068|gb|ACT97572.1| putative D-alanine-D-alanine ligase [uncultured organism]
          Length = 356

 Score =  142 bits (359), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 104/344 (30%), Positives = 161/344 (46%), Gaps = 58/344 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------------------- 38
           +AVL GGISSE ++S  S  +    L    +++  + +                      
Sbjct: 3   LAVLFGGISSEHDISCLSAASILRNLNKDKYEIYPVGITRDGEWFYCPDCDPDRVESGAW 62

Query: 39  DRSVGLVLAHLKPDLA--------------------FNVLHGNFGEDGLVQAILELLEIP 78
           +R  G V   L PD                      F VLHG  GEDG +Q +LEL  IP
Sbjct: 63  ERMTGKVKVVLAPDRGMHGMVLLREGEIEVVRLDCVFPVLHGVGGEDGTMQGLLELAGIP 122

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH----------LISPPY 128
           Y   G+ ASA +MDK  +K+V+   GV      L  R+  +             L + P 
Sbjct: 123 YVGCGVAASANTMDKALTKKVIEGTGVRQARYYLALRYDFERNAEAVVAAAAETLGAFPV 182

Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD---A 185
            +KP   GSS+G  V K +  + L    + +     ++L+E+++DG E+ C V+G+    
Sbjct: 183 FVKPCSQGSSVG--VAKANNLLELAEGLTEALKLDTKVLVEEFIDGHEVECAVLGNLEPQ 240

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
           +  V EIA P  +FY+++ KY   +S   +PA I  +    V++ A   + A+GCRG+SR
Sbjct: 241 ASTVGEIA-PTQEFYTFDAKYKDESSRLYIPAHITEEQLATVRQDAVRVYTALGCRGLSR 299

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
            DF     S +V + E+N  PG T +S++P++  Y G  + ELL
Sbjct: 300 VDFFVTHDSGEVVFNELNAIPGFTSISMYPKLFDYEGIGYAELL 343


>gi|83648822|ref|YP_437257.1| D-alanine-D-alanine ligase-like protein [Hahella chejuensis KCTC
           2396]
 gi|83636865|gb|ABC32832.1| D-alanine-D-alanine ligase and related ATP-grasp enzyme [Hahella
           chejuensis KCTC 2396]
          Length = 331

 Score =  142 bits (359), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 102/324 (31%), Positives = 160/324 (49%), Gaps = 39/324 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-------DRSVGLVLAHLKP-- 51
           +AVL GG S ER+VS++S      AL   G +V  +D           + L+ A + P  
Sbjct: 3   IAVLFGGTSEERDVSIASAAQIIPALRSLGHEVFSVDTATGQLSGTDEMRLLQAGVAPEP 62

Query: 52  --------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
                                     D+ F  LHG  GEDG +QA+L+L  + YT S  +
Sbjct: 63  PSTSVIADVRGRAIALSAEAFNIRDVDVVFLALHGGAGEDGRIQAMLDLAGLAYTGSNHI 122

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145
           ASA++MDK  SKQ+  + GVP    ++    + +    +  P V+KP K GS++G+ V++
Sbjct: 123 ASAVAMDKDLSKQLFRAAGVPTPDWLMAPASSDEVAQKLGWPVVVKPSKQGSTVGLSVVR 182

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205
           +   +   +    + N+ D+++IE+++ G E T G++   +L V EI VP ++ + Y  K
Sbjct: 183 EASELAKAI--ELAMNYDDEVMIEKFIPGREFTVGILDGRALLVGEIIVP-NEIFDYHAK 239

Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           Y    ++ + PA I       +Q +A  AH A+     SR DF  +  +  V+ LE N  
Sbjct: 240 YQVGAASEIFPANISETDAAAMQEIALRAHAALKLGVYSRIDFRVED-NGAVWCLEGNSL 298

Query: 266 PGMTPVSIFPEMAAYAGYSFRELL 289
           PGMT  S+ P+ A  AG  F ELL
Sbjct: 299 PGMTANSLLPQAARAAGIEFPELL 322


>gi|172039648|ref|YP_001806149.1| D-alanyl-alanine synthetase A [Cyanothece sp. ATCC 51142]
 gi|171701102|gb|ACB54083.1| D-alanine--D-alanine ligase [Cyanothece sp. ATCC 51142]
          Length = 351

 Score =  142 bits (359), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 98/344 (28%), Positives = 162/344 (47%), Gaps = 51/344 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------------------D 39
           + +L GG S E EVS++S  A A AL+  G   ++ D+                     D
Sbjct: 8   VGLLFGGRSGEHEVSINSAAAIAQALQ-TGDNANKYDILPIYIQKNGVWVAGDTANEVLD 66

Query: 40  RSVGLVLAHLKP-------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
               L      P             ++ F VLHG  GEDG +Q +L L+++P+  SG+L 
Sbjct: 67  SKAPLATEETNPSQLWQFPTQVQEVEVWFPVLHGPNGEDGTLQGLLTLMQVPFVGSGVLG 126

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP------------PYVIKPLK 134
           SA+ MDK+  K   +  G+P      V R  + S   I P            P  +KP  
Sbjct: 127 SAVGMDKIAMKMAFAQAGLPQVKYRAVERSQVWSNPCIFPKLCDEIEADLGYPCFVKPAN 186

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA- 193
            GSS+GI  ++    +   L  ++S++   +++IE  V+  EL C V+G+ +   + I  
Sbjct: 187 LGSSVGIAKVRSHSELETALDSAASYDR--RIVIEAGVNARELECAVLGNDNPKASVIGE 244

Query: 194 -VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
              + DFY YE KY+   S   +PA +P  I  ++Q +A  A + +   G++R DF +  
Sbjct: 245 VTFEGDFYDYETKYTEGRSQIHIPANLPEKIVSQIQEMAIQAFKTVDAAGLARVDFFYVE 304

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            + +++  EIN  PG T  S++P++    G +F +L+  +V+ A
Sbjct: 305 ETEEIYINEINTLPGFTKFSMYPQLWKATGINFEQLVDQLVQFA 348


>gi|186686633|ref|YP_001869829.1| D-alanyl-alanine synthetase A [Nostoc punctiforme PCC 73102]
 gi|229485969|sp|B2J0J6|DDL_NOSP7 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|186469085|gb|ACC84886.1| D-alanine--D-alanine ligase [Nostoc punctiforme PCC 73102]
          Length = 366

 Score =  142 bits (359), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 86/254 (33%), Positives = 139/254 (54%), Gaps = 20/254 (7%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+ F VLHG  GEDG +Q +L L+++P+  SG+L SA+ MDK+  K      G+      
Sbjct: 103 DIWFPVLHGPNGEDGTIQGLLTLMQVPFVGSGVLGSAMGMDKIAMKMTFEQAGLAQVKYK 162

Query: 112 LVNRFTMDSQHLISP------------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
            + R  + S   + P            P  +KP   GSS+GI  ++  Q +   L  ++S
Sbjct: 163 AITRAQVWSNPCVFPKLCDEIEAALGYPAFVKPANLGSSVGIAKVRSRQELEAALDNAAS 222

Query: 160 WNHGDQLLIEQYVDGIELTCGVMGD----ASLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215
           ++   +L++E  V   E+ C V+G+    AS+ V EI+   SDFY YE KY+   +  ++
Sbjct: 223 YDR--RLVVEAGVVAREVECAVLGNDQPQASV-VGEISY-DSDFYDYETKYTEDRADLLI 278

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275
           PA IP  I +++Q +A  A  A+   G++R DF +   +++V   EIN  PG T  S++P
Sbjct: 279 PAPIPDAIARQIQDMALQAFAAVDAAGLARVDFFYVEATQEVLINEINTLPGFTATSMYP 338

Query: 276 EMAAYAGYSFRELL 289
           ++ A++G SF EL+
Sbjct: 339 QLWAHSGVSFPELV 352


>gi|237785790|ref|YP_002906495.1| D-alanyl-alanine synthetase A [Corynebacterium kroppenstedtii DSM
           44385]
 gi|237758702|gb|ACR17952.1| D-alanine-D-alanine ligase [Corynebacterium kroppenstedtii DSM
           44385]
          Length = 412

 Score =  142 bits (359), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 88/268 (32%), Positives = 140/268 (52%), Gaps = 21/268 (7%)

Query: 42  VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           VG V A +  D+ F VLHG FGEDG VQ + ++  +PY  +G+LASA SMDK  +K++ +
Sbjct: 146 VGQVFADV--DVIFPVLHGGFGEDGTVQGLFDMASVPYVGAGVLASAASMDKEFTKKLAA 203

Query: 102 SCGVPVCPSILVNR---FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS 158
           + G+P+   +++      T + ++L+  P  +KP +GGSS+GI   K DQ   LD     
Sbjct: 204 AEGLPIGRDVVLRETRSLTEEEKNLLGLPVFVKPARGGSSIGI--SKVDQWDELDDALDL 261

Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGD----------ASLDVTEIAVPKSDFYSYELKYSS 208
           +  H  ++++E  + G E+ CGV+            A L+ TE       FY ++ KY  
Sbjct: 262 ARQHDSKVIVESMIVGTEVECGVLQRPDGTVEASLPAQLEDTESG--DEGFYGFDTKYLD 319

Query: 209 LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268
              T  +P     D  + ++ LA     A+ C G++R DF      R     EIN  PG 
Sbjct: 320 NVITAQIPPHFDDDTIRHIRELAVETFHALDCEGLARIDFFV--TDRGPVLNEINTMPGF 377

Query: 269 TPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           TP+S++P+M    G  + +LL  +++ A
Sbjct: 378 TPISMYPQMFGAMGIDYPDLLDLLIQRA 405


>gi|119513697|ref|ZP_01632695.1| D-alanylalanine synthetase [Nodularia spumigena CCY9414]
 gi|119461646|gb|EAW42685.1| D-alanylalanine synthetase [Nodularia spumigena CCY9414]
          Length = 355

 Score =  142 bits (359), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 102/336 (30%), Positives = 166/336 (49%), Gaps = 51/336 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASAL---EDAG-FKVSQIDVDRSVGLVLA--------- 47
           + +L GG S E EVS+SS +A A AL   E+A  +++    + ++ G  LA         
Sbjct: 6   VGLLFGGRSGEHEVSISSARAIAKALSAEENASKYEILPFYIQKN-GCWLAGEIPQQVLE 64

Query: 48  ----HLKP---------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
               HL+                D+ F +LHG  GEDG +Q +L L+++P+  SG+L SA
Sbjct: 65  TGTPHLEDKNLNRWKLPEQVTQVDIWFPILHGPNGEDGTIQGLLTLMQVPFVGSGVLGSA 124

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP------------PYVIKPLKGG 136
           L MDK+  K      G+P      + R  + S   + P            P  +KP   G
Sbjct: 125 LGMDKIAMKMAFEQAGLPQVKYKALTRAEVWSNPCVFPKLCDEIEAALDYPCFVKPANLG 184

Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD---VTEIA 193
           SS+GI  ++  Q +   L  +++++   ++++E  V   E+ C V+G+       V EI 
Sbjct: 185 SSVGIAKVRSRQELEAALDNAATYDR--RIIVEAGVVAREVECAVLGNDQTKASIVGEIT 242

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
              SDFY YE KY+   +  ++PA IP  + +++Q +A  A  A+   G++R DF F   
Sbjct: 243 F-NSDFYDYETKYTVGQADLLIPAPIPDAVSRQIQDMALQAFAAVDAAGLARVDFFFVEA 301

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           + ++   EIN  PG T  S++P++ A +G  F EL+
Sbjct: 302 TGEILINEINTFPGFTATSMYPQLWAESGIPFPELV 337


>gi|119478634|ref|ZP_01618537.1| D-alanine-D-alanine ligase and related ATP-grasp enzyme [marine
           gamma proteobacterium HTCC2143]
 gi|119448411|gb|EAW29662.1| D-alanine-D-alanine ligase and related ATP-grasp enzyme [marine
           gamma proteobacterium HTCC2143]
          Length = 313

 Score =  142 bits (358), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 91/291 (31%), Positives = 145/291 (49%), Gaps = 7/291 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG ++ER VSL SG+A  +AL         +D      +     +    F  LHG
Sbjct: 19  VAVLLGGKTAERAVSLQSGEAILAALRAQNIAAEAVDTQDDSWIKTVAERYQHVFIALHG 78

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GE G VQ  L+ +++ YT SG++ASA+++DK+R K +     +P  PS          
Sbjct: 79  GDGEGGSVQGALDSIDVTYTGSGVMASAIALDKVRCKYLWRGMELPT-PSFCELSINSHW 137

Query: 121 QHLISP--PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
             +I      ++KP   GSS+G+ +      +      +S +     ++ EQ+V G E T
Sbjct: 138 DDIIRQWGKVIVKPASEGSSIGMAIATTGAELKGAYEIASQYQGA--VMAEQWVQGAEFT 195

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             ++G  +L V  +      FY YE KY S ++ ++ P  +     +E++++A  A  ++
Sbjct: 196 VAILGKETLPVIRLETDHG-FYDYEAKYISTDTRYICPCGLSASQEQELKKMALDAFHSV 254

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           GC G  R DF+ D  S   F LE+N  PGMT  S+ P  A  A  +F EL+
Sbjct: 255 GCEGWGRVDFMQDE-SDNFFLLEVNTVPGMTDHSLVPMAAKEASVNFEELV 304


>gi|167969998|ref|ZP_02552275.1| D-alanyl-alanine synthetase A [Mycobacterium tuberculosis H37Ra]
          Length = 358

 Score =  142 bits (358), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 87/257 (33%), Positives = 142/257 (55%), Gaps = 18/257 (7%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+ F VLHG +GEDG +Q +LEL  +PY  +G+LASA+ MDK  +K+++++ G+PV    
Sbjct: 96  DVVFPVLHGPYGEDGTIQGLLELAGVPYVGAGVLASAVGMDKEFTKKLLAADGLPVGAYA 155

Query: 112 LVN--RFTMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL 167
           ++   R T+  Q    +  P  +KP +GGSS+G+  +     +P  + ++    H  +++
Sbjct: 156 VLRPPRSTLHRQECERLGLPVFVKPARGGSSIGVSRVSSWDQLPAAVARAR--RHDPKVI 213

Query: 168 IEQYVDGIELTCGV--MGDASLDVT---EIAVP-----KSDFYSYELKYSSLNSTHVLPA 217
           +E  + G EL CGV  M D +L+ +   EI V      +  FY +  KY    +   +PA
Sbjct: 214 VEAAISGRELECGVLEMPDGTLEASTLGEIRVAGVRGREDSFYDFATKYLDDAAELDVPA 273

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
           K+   + + +++LA  A  AI CRG++R DF        +   EIN  PG T +S++P M
Sbjct: 274 KVDDQVAEAIRQLAIRAFAAIDCRGLARVDFFLTDDGPVIN--EINTMPGFTTISMYPRM 331

Query: 278 AAYAGYSFRELLLWMVE 294
            A +G  +  LL  M+E
Sbjct: 332 WAASGVDYPTLLATMIE 348


>gi|210620965|ref|ZP_03292350.1| hypothetical protein CLOHIR_00293 [Clostridium hiranonis DSM 13275]
 gi|210154949|gb|EEA85955.1| hypothetical protein CLOHIR_00293 [Clostridium hiranonis DSM 13275]
          Length = 293

 Score =  142 bits (358), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 96/290 (33%), Positives = 148/290 (51%), Gaps = 11/290 (3%)

Query: 5   MGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP-DLAFNVLHGNFG 63
           MGGISSERE+SL SG     +L+   ++  ++ +D    ++       D AF  LHG FG
Sbjct: 1   MGGISSEREISLKSGAGVFESLDREKYEPIKVVIDEKTDIITKIPDDVDFAFLALHGKFG 60

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN---RFTMDS 120
           EDG VQ++LE  +IPY+  G L+SA+ MDK  SK++  + G+P    I V        D 
Sbjct: 61  EDGCVQSVLETRDIPYSGCGPLSSAMCMDKNISKKICKASGIPTADWITVKSIEEIDYDR 120

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P  +KP  GGSS+   +IK+   I   + Q    +   +++IEQY+ G E T  
Sbjct: 121 IEEMGYPVFVKPNSGGSSVATFMIKEKAGIEDAVRQGLEVDT--EVMIEQYLPGEECTSF 178

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           ++ D  +  T     + +F+ +E KYSS N        +   +  ++   + +   A  C
Sbjct: 179 IL-DGEVFPTVSIKSEQEFFDFEAKYSSDNGAVEEVVYLEESLQNKLNGYSRMCWDAFNC 237

Query: 241 RGISRSDFLFDPLSRKV-FWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           R   R DF+   +S  V + LE+N  PG+T  S+ P  AA  G S+ +LL
Sbjct: 238 RAYVRVDFI---ISNGVPYVLELNTLPGLTATSLIPRSAAARGISYSQLL 284


>gi|167631710|ref|ZP_02390037.1| D-alanine--D-alanine ligase [Bacillus anthracis str. A0442]
 gi|254743190|ref|ZP_05200875.1| D-alanine--D-alanine ligase [Bacillus anthracis str. Kruger B]
 gi|167532008|gb|EDR94644.1| D-alanine--D-alanine ligase [Bacillus anthracis str. A0442]
          Length = 304

 Score =  142 bits (358), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 91/305 (29%), Positives = 163/305 (53%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGG+SSE++VS+ +G    + L+   +++  I ++  + L+      D A   LHG
Sbjct: 3   IGVIMGGVSSEKQVSIMTGNEMIANLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---FT 117
            +GEDG  Q  LE L IPY+ S +L+S + MDK  SK+++   G+     I + +     
Sbjct: 63  KYGEDGTAQGTLESLGIPYSGSNMLSSGICMDKNISKKILRYEGIETPDWIELTKMEDLN 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGI-IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
            D    +  P V+KP  GGSS+G+ IV  KD+ I + L     W+   +++IE+Y+ G E
Sbjct: 123 FDELDKLGFPLVVKPNSGGSSVGVKIVYDKDELISM-LETVFEWDS--EVVIEKYIKGEE 179

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +TC +     L +  I    ++F+ Y  KY   ++   +  ++P ++ + V + +   ++
Sbjct: 180 ITCSIFDGKQLPIISIR-HAAEFFDYNAKYDDASTIEEV-IELPAELKERVNKASLACYK 237

Query: 237 AIGCRGISRSDFLF-DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           A+ C   +R D +  D +    + +E+N  PGMT  S+ P+ A  AG  + +LL  ++E 
Sbjct: 238 ALKCSVYARVDMMVKDGIP---YVMEVNTLPGMTQASLLPKSADAAGIHYSKLLDMIIET 294

Query: 296 ASCLR 300
           +  +R
Sbjct: 295 SLRVR 299


>gi|229100710|ref|ZP_04231550.1| D-alanine--D-alanine ligase [Bacillus cereus Rock3-29]
 gi|229116119|ref|ZP_04245511.1| D-alanine--D-alanine ligase [Bacillus cereus Rock1-3]
 gi|228667349|gb|EEL22799.1| D-alanine--D-alanine ligase [Bacillus cereus Rock1-3]
 gi|228682691|gb|EEL36729.1| D-alanine--D-alanine ligase [Bacillus cereus Rock3-29]
          Length = 304

 Score =  142 bits (358), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 89/305 (29%), Positives = 167/305 (54%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGG+SSE++VS+ +G    + L+   +++  I ++  + L+      D A   LHG
Sbjct: 3   IGVIMGGVSSEKQVSIMTGNEMIAHLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG VQ  LE L IPY+ S +L+S + MDK  SK+++   GV     I + +     
Sbjct: 63  KYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNISKKILRYEGVETPDWIELTKMADLK 122

Query: 121 QHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS-SWNHGDQLLIEQYVDGIE 176
              +     P V+KP  GGSS+G+ ++  D++  + +L++   W+   +++IE+Y+ G E
Sbjct: 123 LDDLDKLGFPLVVKPNSGGSSVGVKIV-NDKNELISMLETVFEWDS--EVVIEKYIKGDE 179

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +TC +     L +  I    ++F+ Y  KY  +++   +  ++P +I + V + +   ++
Sbjct: 180 ITCSIFDGKHLPIVSIR-HAAEFFDYNAKYDDVSTIEEV-IELPTEIKERVNKASLACYK 237

Query: 237 AIGCRGISRSDFLF-DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           A+ C   +R D +  D +    + +E+N  PGMT  S+ P+ A  AG ++ +LL  ++E 
Sbjct: 238 ALKCSVYARVDMMVKDGIP---YVMEVNTLPGMTQSSLLPKSADAAGINYSKLLDMIIET 294

Query: 296 ASCLR 300
           +  +R
Sbjct: 295 SLRVR 299


>gi|289575688|ref|ZP_06455915.1| D-alanyl-alanine synthetase A [Mycobacterium tuberculosis K85]
 gi|289540119|gb|EFD44697.1| D-alanyl-alanine synthetase A [Mycobacterium tuberculosis K85]
          Length = 364

 Score =  142 bits (358), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 88/263 (33%), Positives = 144/263 (54%), Gaps = 20/263 (7%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+ F VLHG +GEDG +Q +LEL  +PY  +G+LASA+ MDK  +K+++++ G+PV    
Sbjct: 96  DVVFPVLHGPYGEDGTIQGLLELAGVPYVGAGVLASAVGMDKEFTKKLLAADGLPVGAYA 155

Query: 112 LVN--RFTMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL 167
           ++   R T+  Q    +  P  +KP +GGSS+G+  +     +P  + ++    H  +++
Sbjct: 156 VLRPPRSTLHRQECERLGLPVFVKPARGGSSIGVSRVSSWDQLPAAVARAR--RHDPKVI 213

Query: 168 IEQYVDGIELTCGV--MGDASLDVT---EIAVP-----KSDFYSYELKYSSLNSTHVLPA 217
           +E  + G EL CGV  M D +L+ +   EI V      +  FY +  KY    +   +PA
Sbjct: 214 VEAAISGRELECGVLEMPDGTLEASTLGEIRVAGVRGREDSFYDFATKYLDDAAELDVPA 273

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP----LSRKVFWLEINVQPGMTPVSI 273
           K+   + + +++LA  A  AI CRG++R DF        ++      EIN  PG T +S+
Sbjct: 274 KVDDQVAEAIRQLAIRAFAAIDCRGLARVDFFLTDDGPVINDGPVINEINTMPGFTTISM 333

Query: 274 FPEMAAYAGYSFRELLLWMVEDA 296
           +P M A +G  +  LL  M+E A
Sbjct: 334 YPRMWAASGVDYPTLLATMIETA 356


>gi|254819105|ref|ZP_05224106.1| D-alanyl-alanine synthetase A [Mycobacterium intracellulare ATCC
           13950]
          Length = 381

 Score =  142 bits (358), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 94/269 (34%), Positives = 146/269 (54%), Gaps = 22/269 (8%)

Query: 43  GLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS 102
           G VLA +  D+ F VLHG +GEDG +Q +LEL  +PY  +G+LASA  MDK  +K++ ++
Sbjct: 112 GEVLASV--DVVFPVLHGPYGEDGTIQGLLELAGVPYVGAGVLASAAGMDKEFTKKLFAA 169

Query: 103 CGVPVCPSILVN----RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK-DQSIPLDLLQS 157
            G+PV    ++     R   +    +  P  +KP +GGSS+G+  +   DQ   LD   +
Sbjct: 170 EGLPVGDYAVLRPSRARLRPEECQRLGLPVFVKPARGGSSIGVSRVASWDQ---LDAAVA 226

Query: 158 SSWNHGDQLLIEQYVDGIELTCGV--MGDASLDVT---EIAVP-----KSDFYSYELKYS 207
           ++  H  ++++E  + G EL CGV  M D +++ +   EI V      +  FY +  KY 
Sbjct: 227 AARRHDPKVIVEAAIVGRELECGVLEMPDGTVEASALGEIRVAGVRGREDSFYDFATKYL 286

Query: 208 SLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPG 267
              +   +PAK+  +I   V++LA  A +AI C+G++R DF            EIN  PG
Sbjct: 287 DDAAELDVPAKVDDEIADTVRQLAVRAFKAIDCQGLARVDFFL--TEDGPVLNEINTMPG 344

Query: 268 MTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            T +S++P M A +G  +  LL  MVE A
Sbjct: 345 FTTISMYPRMWAASGVDYPTLLATMVETA 373


>gi|145593823|ref|YP_001158120.1| D-alanine--D-alanine ligase [Salinispora tropica CNB-440]
 gi|145303160|gb|ABP53742.1| D-alanine--D-alanine ligase [Salinispora tropica CNB-440]
          Length = 368

 Score =  142 bits (358), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 84/257 (32%), Positives = 137/257 (53%), Gaps = 15/257 (5%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+ F VLHG +GEDG +Q +LE+  IPY  + + ASA +MDK  +K++ ++ G+P+ P +
Sbjct: 107 DVVFPVLHGAYGEDGSIQGMLEMAGIPYVGANVFASAAAMDKEFTKKLCAAEGIPIGPYV 166

Query: 112 LVN---RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168
           ++      T   +  +  P  +KP + GSS GI  I       LD   +++     ++L+
Sbjct: 167 VLRSGMTLTEQDKQRLGLPVFVKPSRAGSSFGITKISDWAE--LDAAVATARQIDSKVLV 224

Query: 169 EQYVDGIELTCGVMGDASLDVTEIA-------VPKSDFYSYELKYSSLNST--HVLPAKI 219
           E  V G E+ CGV+   +  V E +       V + DFY +E KY    S   + +PA +
Sbjct: 225 EAAVVGREIECGVLEGEAGGVPEASVLAEVRVVGEYDFYDFEAKYIDAESACEYDIPAGL 284

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279
              + ++VQ  A  A  A+ C G++R+DF   P    ++  EIN  PG TP S+FP M A
Sbjct: 285 SERVTRQVQEYAVRAFTALDCAGLARADFFVTP-ELDIYLNEINTMPGFTPSSMFPRMWA 343

Query: 280 YAGYSFRELLLWMVEDA 296
            +G  + +L+  ++  A
Sbjct: 344 ASGLEYPKLVNRLIRTA 360


>gi|332664669|ref|YP_004447457.1| D-alanine--D-alanine ligase [Haliscomenobacter hydrossis DSM 1100]
 gi|332333483|gb|AEE50584.1| D-alanine--D-alanine ligase [Haliscomenobacter hydrossis DSM 1100]
          Length = 329

 Score =  142 bits (358), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 94/320 (29%), Positives = 164/320 (51%), Gaps = 30/320 (9%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD------RSVGLVL-------- 46
           +A+L GG  +ER VSL S +     L D  ++   I+++      +  G V+        
Sbjct: 4   VAILTGGNVAERSVSLKSAETVRKHLNDQKYEKYVIELNGTQFTEQGTGTVVNLNDFSLP 63

Query: 47  ---AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103
               ++K DL + +LHG+  EDG +Q   E+L IPYT   +++SA++ +K   K  + S 
Sbjct: 64  TPNGNIKFDLVYQMLHGHPAEDGCLQGYFEVLGIPYTGCDVMSSAITFNKQACKDFLRSH 123

Query: 104 GVPVCPSILVNR---FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160
            +P+ PS ++ +           +  P  +KP K GSS G   +     +   +    ++
Sbjct: 124 NIPMAPSKVLRKGEAINWAELEAMGVPVFVKPNKNGSSYGASKVNTPDQLAGAI--EHAF 181

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDAS----LDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216
            + D++++E ++ G E + GV+        L +TEI VP ++F+ ++ KY +  S  + P
Sbjct: 182 VYDDEVVVEGFLKGTEFSNGVLRRNGEVVVLPITEI-VPHNEFFDFKAKYEN-QSQEITP 239

Query: 217 AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPE 276
           A++  +   +VQ    L ++A+GCRGI R D++   +    F+LE N  PGM+  SI P+
Sbjct: 240 ARLTPEQTAQVQAQTKLIYEAVGCRGICRFDYIL--VGDTFFFLEANTIPGMSEQSIVPQ 297

Query: 277 MAAYAGYSFRELLLWMVEDA 296
            A   G+S  ELL   V++A
Sbjct: 298 QARAHGWSITELLDAAVDEA 317


>gi|148657890|ref|YP_001278095.1| D-alanine--D-alanine ligase [Roseiflexus sp. RS-1]
 gi|148570000|gb|ABQ92145.1| D-alanine--D-alanine ligase [Roseiflexus sp. RS-1]
          Length = 370

 Score =  142 bits (358), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 93/289 (32%), Positives = 149/289 (51%), Gaps = 18/289 (6%)

Query: 16  LSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP----DLAFNVLHGNFGEDGLVQAI 71
           L  G   A+    AG    Q   D    +V     P    D+ F VLHG  GEDG VQ +
Sbjct: 69  LPGGSISATTTASAGVG-DQETTDPGTLIVAGEYSPLKTLDVIFPVLHGPMGEDGTVQGL 127

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--FTMDSQHLIS---- 125
           LEL+ +PY   G+LASA+ MDK  +K   S  G+PV P +LV R  +  + Q ++     
Sbjct: 128 LELIGVPYVGCGVLASAVGMDKAMTKVAFSGAGLPVLPWLLVRRREWEHEPQRVLDWIES 187

Query: 126 ---PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
               P  +KP   GSS+G+  +    ++   + +++S++   ++++EQ +   E+   V+
Sbjct: 188 RLHYPMFVKPANLGSSVGVSKVTDRATLEQGIAEAASYDR--RIIVEQGIPAREIEVSVL 245

Query: 183 GD--ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           G+      V    +P  ++Y Y  KY S +S  ++PA I L++  +V+ LA  A +AI  
Sbjct: 246 GNDEPEASVPGEVIPSGEWYDYAAKYLSGSSQILIPAPITLELAAQVRTLAVQAFKAIDG 305

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
            G++R DFL +  +  ++  EIN  PG TPVS++  M   +G  +  LL
Sbjct: 306 AGLARVDFLLNRETGDLYLNEINTMPGFTPVSMYAMMWDASGLPYTHLL 354


>gi|297172447|gb|ADI23420.1| D-alanine-D-alanine ligase and related ATP-grasp enzymes
           [uncultured gamma proteobacterium HF0770_33G18]
          Length = 298

 Score =  142 bits (358), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 84/259 (32%), Positives = 144/259 (55%), Gaps = 19/259 (7%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+ F +LHG +GEDG VQ +LEL  +PY  +G+ ASA+ MDK  ++ + S+ G+P    +
Sbjct: 31  DVVFPLLHGPYGEDGTVQGLLELAGVPYVGAGVAASAVGMDKELARAIFSAAGLPQTRFV 90

Query: 112 LVNRF---------TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS--SSW 160
           ++ R            + +     P  IKP+  GSS+GI           +L+Q   S+ 
Sbjct: 91  VIRRTRWSENPNLGVQEVERDFDYPLFIKPVNLGSSVGITKAHDRD----ELIQGVDSAG 146

Query: 161 NHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIA--VPKSDFYSYELKYSSLNSTHVLPA 217
            +  ++LIE  V+   E+ C V+G+  L+V+ +   VP ++FY Y  KY    +T ++PA
Sbjct: 147 VYATKILIEVSVEQAREIECAVLGEEDLEVSGVGEIVPGAEFYDYRTKYIDDCATLIIPA 206

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
            +P    K++Q ++    +AI C G++R DFL      ++   EIN  PG TP+S++P++
Sbjct: 207 DLPGATVKQIQEMSIRTFRAIDCSGLARVDFLIGQ-DGEILLNEINTMPGFTPISMYPKL 265

Query: 278 AAYAGYSFRELLLWMVEDA 296
            A AG ++ +L+  +++ A
Sbjct: 266 WAAAGLNYPDLIDRLIQIA 284


>gi|161779891|gb|ABX79437.1| VanC1 [Enterococcus gallinarum]
          Length = 343

 Score =  142 bits (358), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 97/331 (29%), Positives = 165/331 (49%), Gaps = 45/331 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD--------------------- 39
           +AVL GG S E  VSL+S  +   A++   ++V  I +                      
Sbjct: 4   IAVLFGGNSPEYSVSLASAASVIQAIDPLKYEVMTIGIAPTMDWYWYQGNLANVRNDTWL 63

Query: 40  -----------RSVGLVLAHLK--PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
                       S G +L   +  PD+ F VLHG +GEDG +Q +LEL+ +PY    + A
Sbjct: 64  EDHKNCHQLTFSSQGFILGEKRIVPDVLFPVLHGKYGEDGCIQGLLELMNLPYVGCHVAA 123

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIKPLKGGSSLG 140
           +AL M+K    Q+  + G+   P++L++R+  D   +         P  IKP + GSS G
Sbjct: 124 TALCMNKWLLHQLADTMGIASAPTLLLSRYENDPATIDRFIQDHGFPIFIKPNEAGSSKG 183

Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI-AVPKSD- 198
           I  +    ++   L  ++++ +G  +LI++ + GIE+ CG++G+  L +    A+   D 
Sbjct: 184 ITKVTDKTALQSAL--TTAFAYGSTVLIQKAIAGIEIGCGILGNEQLTIGACDAISLVDG 241

Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
           F+ +E KY  +++T  +PA +PL +  +++  A L ++ +G  G++R DF F      ++
Sbjct: 242 FFDFEEKYQLISATITVPAPLPLALESQIKEQAQLLYRNLGLTGLARIDF-FVTNQGAIY 300

Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
             EIN  PG T  S +P M A  G S+  L+
Sbjct: 301 LNEINTMPGFTGHSRYPAMMAEVGLSYEILV 331


>gi|15610118|ref|NP_217497.1| D-alanyl-alanine synthetase A [Mycobacterium tuberculosis H37Rv]
 gi|148662831|ref|YP_001284354.1| D-alanyl-alanine synthetase A [Mycobacterium tuberculosis H37Ra]
 gi|306777274|ref|ZP_07415611.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis
           SUMu001]
 gi|306973392|ref|ZP_07486053.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis
           SUMu010]
 gi|307081100|ref|ZP_07490270.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis
           SUMu011]
 gi|307085704|ref|ZP_07494817.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis
           SUMu012]
 gi|6919857|sp|P95114|DDL_MYCTU RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|166198493|sp|A5U6Z2|DDL_MYCTA RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|290790328|pdb|3LWB|A Chain A, Crystal Structure Of Apo D-Alanine:d-Alanine Ligase (Ddl)
           From Mycobacterium Tuberculosis
 gi|290790329|pdb|3LWB|B Chain B, Crystal Structure Of Apo D-Alanine:d-Alanine Ligase (Ddl)
           From Mycobacterium Tuberculosis
 gi|1694850|emb|CAB05431.1| PROBABLE D-ALANINE--D-ALANINE LIGASE DDLA (D-ALANYLALANINE
           SYNTHETASE) (D-ALA-D-ALA LIGASE) [Mycobacterium
           tuberculosis H37Rv]
 gi|148506983|gb|ABQ74792.1| D-alanylalanine synthetase [Mycobacterium tuberculosis H37Ra]
 gi|308214324|gb|EFO73723.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis
           SUMu001]
 gi|308357192|gb|EFP46043.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis
           SUMu010]
 gi|308361146|gb|EFP49997.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis
           SUMu011]
 gi|308364739|gb|EFP53590.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis
           SUMu012]
          Length = 373

 Score =  142 bits (358), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 87/257 (33%), Positives = 142/257 (55%), Gaps = 18/257 (7%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+ F VLHG +GEDG +Q +LEL  +PY  +G+LASA+ MDK  +K+++++ G+PV    
Sbjct: 111 DVVFPVLHGPYGEDGTIQGLLELAGVPYVGAGVLASAVGMDKEFTKKLLAADGLPVGAYA 170

Query: 112 LVN--RFTMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL 167
           ++   R T+  Q    +  P  +KP +GGSS+G+  +     +P  + ++    H  +++
Sbjct: 171 VLRPPRSTLHRQECERLGLPVFVKPARGGSSIGVSRVSSWDQLPAAVARAR--RHDPKVI 228

Query: 168 IEQYVDGIELTCGV--MGDASLDVT---EIAVP-----KSDFYSYELKYSSLNSTHVLPA 217
           +E  + G EL CGV  M D +L+ +   EI V      +  FY +  KY    +   +PA
Sbjct: 229 VEAAISGRELECGVLEMPDGTLEASTLGEIRVAGVRGREDSFYDFATKYLDDAAELDVPA 288

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
           K+   + + +++LA  A  AI CRG++R DF        +   EIN  PG T +S++P M
Sbjct: 289 KVDDQVAEAIRQLAIRAFAAIDCRGLARVDFFLTDDGPVIN--EINTMPGFTTISMYPRM 346

Query: 278 AAYAGYSFRELLLWMVE 294
            A +G  +  LL  M+E
Sbjct: 347 WAASGVDYPTLLATMIE 363


>gi|227501785|ref|ZP_03931834.1| D-alanyl-alanine synthetase A [Corynebacterium accolens ATCC 49725]
 gi|227077810|gb|EEI15773.1| D-alanyl-alanine synthetase A [Corynebacterium accolens ATCC 49725]
          Length = 355

 Score =  142 bits (358), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 101/350 (28%), Positives = 168/350 (48%), Gaps = 56/350 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI------------------------ 36
           +AVL GG S+E  VS  S  A    L+   F+V  I                        
Sbjct: 7   VAVLYGGRSTEHSVSCVSAGAIMKHLDPEKFQVVPIGITREGTWTPGDTEGLEIVDGVMP 66

Query: 37  DVDRSVGLVLA-----------------HLKPDLAFNVLHGNFGEDGLVQAILELLEIPY 79
           +V R   L L+                 + + D+ F +LHG +GEDG +Q + EL  IPY
Sbjct: 67  EVKRGTELALSADPTRKGEIRAISDGSLYAQVDVIFPILHGPYGEDGTMQGLFELSGIPY 126

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFTMDSQHLISPPYVIKPLKGG 136
              G+LAS++ MDK  +K+++S+ G+PV P ++V      T++ +  +  P  +KP +GG
Sbjct: 127 VGPGVLASSVGMDKEFTKKILSAAGLPVAPEVIVQGRTELTVEEKERLGLPVFVKPARGG 186

Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM----GD--ASLDVT 190
           SS+G+  +      P  +    +    D++L+E  + G E+  GV+    G+  AS+   
Sbjct: 187 SSIGVSKVSDWADFPEAV--RIALEDDDKILVEPEIVGREVEVGVLQYPDGELIASVPAL 244

Query: 191 EIAVPKSD--FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
              +  SD  FY +E KY     T  +PA  P ++  +++ +A  A +A+ C G+SR DF
Sbjct: 245 LKGIDDSDEGFYGFETKYLDNVVTAQIPAPFPEELTAQLRDMAIRAFKALNCTGLSRVDF 304

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
                   ++  E+N  PG TP+S++P++ A +G  +  LL  ++  A  
Sbjct: 305 FV--TEEGLYINEVNTLPGFTPISMYPQVLAASGVDYPSLLEVLIASAEA 352


>gi|289669898|ref|ZP_06490973.1| D-alanyl-alanine synthetase A [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 367

 Score =  142 bits (358), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 101/347 (29%), Positives = 167/347 (48%), Gaps = 57/347 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD--------------------- 39
           + ++ GG S+E EVSL S +    AL+   F+   I +D                     
Sbjct: 6   VGLIFGGKSAEHEVSLQSARNILDALDPQRFEAVLIGIDKQGQWHVNDPDSFLLHADDPA 65

Query: 40  --------RSVGLV--------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEI 77
                   R V L+               A  + D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  RIALHRSGRGVALLPGAQQQQLQPIQPEQALAQIDVVFPIVHGTLGEDGSLQGLLRMANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT---MDSQHLISP---PYVIK 131
           P+  SG+L SA++MDK  +K+V+   G+ V P +  NR T    D   LI+    P  +K
Sbjct: 126 PFVGSGVLGSAVAMDKDMAKRVLRDAGLAVAPFVCFNRHTAAHADVDGLIAQLGLPLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT- 190
           P   GSS+G+  ++        L  +  ++H  ++L+E  + G E+ C V+G+A+   + 
Sbjct: 186 PANQGSSVGVSQVRTADQFAAALALALDYDH--KVLVEAAIAGREIECAVLGNATPQASV 243

Query: 191 --EIAVPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
             E+ V  + FYSYE KY S   +  V+PA I     + +Q +A  A+QA+ C G++R D
Sbjct: 244 CGEVVVHDA-FYSYETKYISEYGAEIVIPADIDAQAEQRIQHIAVQAYQALECAGMARVD 302

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
                  R V   E+N  PG T +S++P++   +G  +R L+  ++E
Sbjct: 303 VFLCADGRIVIN-EVNTLPGFTRISMYPKLWQASGLDYRSLITRLIE 348


>gi|160878245|ref|YP_001557213.1| D-alanine--D-alanine ligase [Clostridium phytofermentans ISDg]
 gi|160426911|gb|ABX40474.1| D-alanine--D-alanine ligase [Clostridium phytofermentans ISDg]
          Length = 340

 Score =  142 bits (357), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 105/336 (31%), Positives = 164/336 (48%), Gaps = 53/336 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           + VL GG+S EREVSLSSG   A+AL + G++V  +D+   +  V               
Sbjct: 3   VVVLAGGLSPEREVSLSSGSKIANALMEKGYEVLLLDLYLGIKDVTNIDSLFRKMEDQNP 62

Query: 46  -----------LAHLKPDLA--------------------FNVLHGNFGEDGLVQAILEL 74
                      L  LK D                      F  LHG+ GE+G +QA+ ++
Sbjct: 63  YQYQVPKEEPNLTKLKEDSGNGGILIGENVLLLCQYADKVFLALHGSIGENGQLQAMFDI 122

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--QHLISPPYVIKP 132
             I YT SG + S L+MDK  SK ++   G+   P  +V   T +   +  +  P VIKP
Sbjct: 123 YGISYTGSGYIGSLLAMDKGLSKVIMQKHGIET-PDYIVADLTEEQELEKTLMLPCVIKP 181

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192
           L  GSS+G+ +++  + +   L  +  +   +++LIE+ + G E + G++   +L + EI
Sbjct: 182 LSCGSSVGVSIVRSQEELGKALDYAKKYE--NKVLIEELIVGREFSVGILNHHALPLIEI 239

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            +PK+ FY Y  KY +  +T V PA++  +I  ++Q  A   H+ +     SR DFL   
Sbjct: 240 -IPKTGFYDYTNKYQAGMATEVCPAQLEDEISIKMQEAALKVHEVLQLGFYSRVDFLLKE 298

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
                + LE N  PGMTP S+ P+ AA  G S+ +L
Sbjct: 299 -DGSFYCLEANTLPGMTPTSLLPQEAAAIGISYSKL 333


>gi|289676716|ref|ZP_06497606.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. syringae
           FF5]
          Length = 264

 Score =  142 bits (357), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 80/249 (32%), Positives = 142/249 (57%), Gaps = 12/249 (4%)

Query: 53  LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
           + F ++HG FGEDG +Q +L +L +P+  + +L+SA+ MDK  +K+++   G+ V P  +
Sbjct: 1   VVFPLIHGAFGEDGALQGLLRMLAVPFVGADVLSSAVCMDKDVTKRLLRDAGITVAPFRV 60

Query: 113 VNR-----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL 167
           ++R     FT  +  L   P  IKP   GSS+G+  +  +      L     ++H  +LL
Sbjct: 61  LSRGESLSFTEAADQL-GLPMFIKPANQGSSVGVSKVSDEAGFAAALALGFEFDH--KLL 117

Query: 168 IEQYVDGIELTCGVMG--DASLDVTEIAVPKSDFYSYELKYSSLNSTHV-LPAKIPLDIY 224
           IEQ + G E+ C V+G  D  + V    +   +FY+Y+ KY + +   + +PA++P D+ 
Sbjct: 118 IEQGIVGREVECAVLGNVDVQVSVCGEVIANDEFYAYDTKYLNGDQARIAIPAELPADLS 177

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
            +V+ +A  A++ +GC G+SR DF F    R +   E+N  PG T +S++P++   +G S
Sbjct: 178 DQVREVALQAYKVLGCAGLSRVDF-FVTEGRDIIINEVNTLPGFTSISMYPKLWQASGLS 236

Query: 285 FRELLLWMV 293
           + EL+  ++
Sbjct: 237 YAELIHRLI 245


>gi|88854490|ref|ZP_01129157.1| D-alanine--D-alanine ligase [marine actinobacterium PHSC20C1]
 gi|88816298|gb|EAR26153.1| D-alanine--D-alanine ligase [marine actinobacterium PHSC20C1]
          Length = 316

 Score =  142 bits (357), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 106/297 (35%), Positives = 153/297 (51%), Gaps = 18/297 (6%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62
           VL GGIS ER+VSL SG+  A  L   G  V   D D ++   L   KPD+ +  LHG  
Sbjct: 10  VLAGGISHERDVSLRSGRRVADGLLAQGKDVELRDPDATLLPYLRDSKPDVVWPALHGAS 69

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--FTMDS 120
           GEDG ++ +L+L+ IPY  S   A+ L+ DK  +K +VS  GV    SI ++R  F    
Sbjct: 70  GEDGALRGLLDLIGIPYVGSRADAARLAWDKPTAKSLVSRVGVRTPLSIALSRDSFRELG 129

Query: 121 QHLI--------SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
            H I        S   V+KP +GGS+ G+ ++     +P  ++  +++N+ D  LIEQ +
Sbjct: 130 AHSILDELADELSGDLVVKPAQGGSAQGVSIVTDRSDLPSAMV--NAYNYCDVALIEQRI 187

Query: 173 DGIELTCGV----MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
            G+E+  GV    MG  +L   EI  P    Y++E +Y++  +    PA+I         
Sbjct: 188 TGVEIAIGVLDSGMGAVALPAVEID-PVGGAYTFEARYNAGQTRFYTPARISGADADRAA 246

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285
             A  AH A+G R +SR D + D      F LE NV PG+T  SIFP+    AG+  
Sbjct: 247 EAALAAHSALGLRHLSRVDMIVDGAGTPWF-LEANVLPGLTETSIFPQALVAAGHDL 302


>gi|162660760|gb|EDQ48523.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 265

 Score =  142 bits (357), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 79/230 (34%), Positives = 130/230 (56%), Gaps = 9/230 (3%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D  F  LHG +GEDG VQ  LELL IPYT  G++AS+++MDK+ +K++    G+P     
Sbjct: 36  DRCFIALHGRYGEDGTVQGALELLGIPYTGPGVMASSIAMDKIMTKRIWRFEGLPTPDWR 95

Query: 112 LVNRF--TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
           LV     T  +   +  P ++KP + GS++G+  +   +      + +S ++   ++L E
Sbjct: 96  LVASAGETRAALQALGAPMIVKPSREGSTIGLTKVWTAEECEQAYVLASRYD--PEVLCE 153

Query: 170 QYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
           ++++G E TC V+G      +L V  I  P+ + Y Y+ KY + ++ +  P+ +P +   
Sbjct: 154 EFIEGDETTCPVLGTGEGAHALPVIRIVAPEGN-YDYQNKYFTDDTKYHCPSGLPAEEEA 212

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275
           E++R+   A + +GCRG SR+D +     RK F LEIN  PGMT  S+ P
Sbjct: 213 EIRRIVVRAFRTLGCRGWSRADIMIRASDRKPFLLEINTSPGMTGHSLVP 262


>gi|196043714|ref|ZP_03110952.1| D-alanine--D-alanine ligase [Bacillus cereus 03BB108]
 gi|225864595|ref|YP_002749973.1| D-alanine--D-alanine ligase [Bacillus cereus 03BB102]
 gi|229184840|ref|ZP_04312032.1| D-alanine--D-alanine ligase [Bacillus cereus BGSC 6E1]
 gi|196026023|gb|EDX64692.1| D-alanine--D-alanine ligase [Bacillus cereus 03BB108]
 gi|225787258|gb|ACO27475.1| D-alanine--D-alanine ligase [Bacillus cereus 03BB102]
 gi|228598645|gb|EEK56273.1| D-alanine--D-alanine ligase [Bacillus cereus BGSC 6E1]
          Length = 304

 Score =  142 bits (357), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 91/305 (29%), Positives = 161/305 (52%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGG+SSE++VS+ +G    + L+   +++  I ++  + L+      D A   LHG
Sbjct: 3   IGVIMGGVSSEKQVSIMTGNEMIAHLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---FT 117
            +GEDG VQ  LE L IPY+ S +L+S + MDK  SK+++   G+     I + +     
Sbjct: 63  KYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNMSKKILRYEGIETPDWIELTKMEDLN 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGI-IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
            D    +  P V+KP  GGSS+G+ IV  KD+ I   L     W+   +++IE+Y+ G E
Sbjct: 123 FDELDKLGFPLVVKPNSGGSSVGVKIVYDKDELIST-LETVFEWDS--EVVIEKYIKGDE 179

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +TC +     L +  I    ++F+ Y  KY    +   +  ++P ++ + V + +   ++
Sbjct: 180 ITCSIFDGKQLPIISIR-HAAEFFDYNAKYDDAGTIEEV-IELPAELKERVNKASLACYK 237

Query: 237 AIGCRGISRSDFLF-DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           A+ C   +R D +  D +    + +E+N  PGMT  S+ P+ A   G  + +LL  ++E 
Sbjct: 238 ALKCSVYARVDMMVKDGIP---YVMEVNTLPGMTQASLLPKSAEAEGIDYSKLLDMIIET 294

Query: 296 ASCLR 300
           +  +R
Sbjct: 295 SLRVR 299


>gi|255306374|ref|ZP_05350545.1| D-alanine--D-alanine ligase [Clostridium difficile ATCC 43255]
          Length = 299

 Score =  142 bits (357), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 95/300 (31%), Positives = 151/300 (50%), Gaps = 13/300 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVL-- 58
           +AV+MGGISSEREVSL+SGK   + L+   ++V ++ +D     +   +  D+ F +L  
Sbjct: 3   IAVIMGGISSEREVSLNSGKEIYNNLDKNKYEVVKVIIDDKKD-IFTKIPEDIDFAILAL 61

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL---VNR 115
           HG FGEDG +Q+ILE ++IPY+  G L S + MDK  +K+++    +P  P +L   V+ 
Sbjct: 62  HGKFGEDGCIQSILETMDIPYSGCGPLCSGMCMDKNITKKMLRDSNLPTAPWVLVKSVDE 121

Query: 116 FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175
              D    I  P  IKP  GGSS+    I     +   + +    +  + ++IE+Y+ G 
Sbjct: 122 IDYDEIDNIGYPVFIKPNSGGSSVATFFIHSKDEVEKAVRKGLEVD--EFVMIEKYIPGG 179

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
           E T  ++         I    S F+ YE KYS           +  ++ K V  ++    
Sbjct: 180 EYTSFILNGEVFPTISIK-SDSGFFDYEAKYSVEKGAKEEVVYLDEELQKRVNEISETCW 238

Query: 236 QAIGCRGISRSDFLFDPLSRKV-FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           +   C+   R D +   +S  + + LE+N  PGMT  S+ P  AA  G  + ELL  ++E
Sbjct: 239 KIFNCKAYVRVDMI---ISEGIPYVLELNTLPGMTQTSLIPRSAAARGIKYSELLDKLIE 295


>gi|297171881|gb|ADI22869.1| D-alanine-D-alanine ligase and related ATP-grasp enzymes
           [uncultured gamma proteobacterium HF0500_32L01]
          Length = 281

 Score =  142 bits (357), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 82/255 (32%), Positives = 143/255 (56%), Gaps = 15/255 (5%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+ F +LHG +GEDG VQ +LEL  +PY  +G+ ASA+ MDK  ++ V S+ G+P   S+
Sbjct: 14  DVVFPLLHGPYGEDGTVQGLLELAGVPYVGAGVAASAVGMDKELARTVFSAVGLPQTRSV 73

Query: 112 LVNR---------FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
           +++R            + +   + P  +KP   GSS+GI  +     +   L  +  ++ 
Sbjct: 74  VIHRSCWRGSPGQVVEEVEREFNYPLFVKPASLGSSVGISKVHDRNQLIEGLNGAGIYD- 132

Query: 163 GDQLLIEQYVDGI-ELTCGVMGDASLDVTEIA--VPKSDFYSYELKYSSLNSTHVLPAKI 219
             ++LIE  V+   E+ C V+G  + +V+ +   VP ++FY Y  KY    +T ++PA +
Sbjct: 133 -TKILIEVAVEAAREIECAVLGGENPEVSGVGEIVPGAEFYDYRTKYIDDCATLIIPADL 191

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279
           P     ++Q ++  A +AI C G++R DFL      ++F  EIN  PG TP+S++P++  
Sbjct: 192 PEATVSQIQEMSIRAFRAIDCSGLARVDFLISQ-DGEIFLNEINTMPGFTPISMYPKLWE 250

Query: 280 YAGYSFRELLLWMVE 294
            AG S+ +L+  +++
Sbjct: 251 EAGLSYPDLIDKLIQ 265


>gi|169630367|ref|YP_001704016.1| D-alanyl-alanine synthetase A [Mycobacterium abscessus ATCC 19977]
 gi|169242334|emb|CAM63362.1| Probable D-alanine--D-alanine ligase DdlA [Mycobacterium abscessus]
          Length = 381

 Score =  142 bits (357), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 93/282 (32%), Positives = 149/282 (52%), Gaps = 30/282 (10%)

Query: 36  IDVDRSV-GLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKM 94
           ++VD S  G VLA +  D+ F VLHG +GEDG +Q +LEL  +PY  +G+LASA  MDK 
Sbjct: 101 VNVDSSAAGQVLASV--DVVFPVLHGPYGEDGTIQGLLELAGVPYVGAGVLASAAGMDKE 158

Query: 95  RSKQVVSSCGVPVCPSILV----NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150
            +K+++++ G+P+    ++       T+D +  +  P  +KP + GSS G+  +   + +
Sbjct: 159 FTKKLLAAEGLPIGKYAVIRPRDTTLTLDQREDLGLPVFVKPARAGSSFGVSRVTAWEEL 218

Query: 151 PLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM----GDASLDV-TEIAVPKSD------- 198
           P  +  +  ++   ++++E  + G EL CGV+    GD    V  EI V   +       
Sbjct: 219 PAAIAHARQYDP--KVIVEAAIVGRELECGVLEFPDGDTRASVLGEIRVEGVNRDQTAAG 276

Query: 199 -FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF---DPLS 254
            FY +E KY    +   +PAK+  D+  +++ LA  A +AI C+G++R DF      PL 
Sbjct: 277 AFYDFETKYLDDTAELDVPAKVDDDVSDQIRELAVAAFRAIDCQGLARVDFFLAEDGPLI 336

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                 EIN  PG T +S++P M    G  +  LL  MV  A
Sbjct: 337 N-----EINTMPGFTTISMYPRMWDATGVDYPTLLDAMVRTA 373


>gi|323359683|ref|YP_004226079.1| D-alanine-D-alanine ligase [Microbacterium testaceum StLB037]
 gi|323276054|dbj|BAJ76199.1| D-alanine-D-alanine ligase [Microbacterium testaceum StLB037]
          Length = 361

 Score =  142 bits (357), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 103/349 (29%), Positives = 159/349 (45%), Gaps = 64/349 (18%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD-------- 52
           + VL GG SSE  +S ++      A++   F+V  + + R    VL    PD        
Sbjct: 6   VVVLFGGRSSEHSISSATAGGVLRAIDRDRFRVIPVGITRDGAFVLEDDDPDKFALIPEA 65

Query: 53  -------------------------------------LAFNVLHGNFGEDGLVQAILELL 75
                                                +   +LHG FGEDG VQ +LELL
Sbjct: 66  LPQVVDNGTRVRLPDSTLTREWTVTDAEGTWSLGDVDVVLPILHGRFGEDGTVQGLLELL 125

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ--------HLISPP 127
            IPY   G+L SA+ M+K  +KQV+ +  VPV P + V+R  +             +  P
Sbjct: 126 GIPYAGGGVLMSAIGMNKHVTKQVLRAANVPVVPWVAVSRADLARDRSLWERRIRALDLP 185

Query: 128 YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM----- 182
             +KP + GSS+G+  + + +   LD    +++     +L+E+ + G EL CGV+     
Sbjct: 186 VFVKPNEAGSSVGVTKVSRWED--LDAALDTAFAEDGLVLVEKAIVGRELECGVLPGRDG 243

Query: 183 GDASLDVT-EIAVPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           G   + V  EI V   +FY +E KY        V PA++      E+QR+A  A +AIG 
Sbjct: 244 GPVRVSVAGEIVVTGREFYDFEAKYLDAPGVDLVCPAELGDGELAEMQRIATQAFEAIGG 303

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           +G++R DF       + F  E+N  PG TP+S+FP     +G S+ +L+
Sbjct: 304 QGLARVDFF--STGTEFFVNEVNTMPGFTPISMFPTCWIASGLSYPDLI 350


>gi|289664973|ref|ZP_06486554.1| D-alanyl-alanine synthetase A [Xanthomonas campestris pv.
           vasculorum NCPPB702]
          Length = 367

 Score =  142 bits (357), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 101/347 (29%), Positives = 167/347 (48%), Gaps = 57/347 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD--------------------- 39
           + ++ GG S+E EVSL S +    AL+   F+   I +D                     
Sbjct: 6   VGLIFGGKSAEHEVSLQSARNILDALDPQRFEAVLIGIDKQGQWHVNDPDSFLLHADDPA 65

Query: 40  --------RSVGLV--------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEI 77
                   R V L+               A  + D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  RIALHRSGRGVALLPGAQQQQLQPIQPEQALAQIDVVFPIVHGTLGEDGSLQGLLRMANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT---MDSQHLISP---PYVIK 131
           P+  SG+L SA++MDK  +K+V+   G+ V P +  NR T    D   LI+    P  +K
Sbjct: 126 PFVGSGVLGSAVAMDKDMAKRVLRDAGLAVAPFVCFNRHTAAHADVDGLIAQLGLPLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT- 190
           P   GSS+G+  ++        L  +  ++H  ++L+E  + G E+ C V+G+A+   + 
Sbjct: 186 PANQGSSVGVSQVRTADQFAAALALALDYDH--KVLVEAAIAGREIECAVLGNATPQASV 243

Query: 191 --EIAVPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
             E+ V  + FYSYE KY S +    V+PA I     + +Q +A  A+QA+ C G++R D
Sbjct: 244 CGEVVVHDA-FYSYETKYISEHGAEIVIPADIDAQAEQRIQHIAVQAYQALECAGMARVD 302

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
                  R V   E+N  PG T +S++P++   +G  +R L+  ++E
Sbjct: 303 VFLCADGRIVIN-EVNTLPGFTRISMYPKLWQASGLDYRSLITRLIE 348


>gi|254967034|gb|ACT97553.1| putative D-alanine-D-alanine ligase [uncultured organism]
 gi|254967054|gb|ACT97564.1| putative D-alanine-D-alanine ligase [uncultured organism]
          Length = 367

 Score =  142 bits (357), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 83/245 (33%), Positives = 138/245 (56%), Gaps = 6/245 (2%)

Query: 50  KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109
           K D+ F  LHG+ GEDG +QA  EL+ I YT +  ++SA+SM K  +K+V+   G+P+  
Sbjct: 122 KADIVFMGLHGSNGEDGKIQAAFELMGIKYTGTDYISSAISMSKELTKKVLVPEGIPMPK 181

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            I +++        +  P V+KP  GGSS+G+ ++  ++     L  + ++++ D +L+E
Sbjct: 182 GIALHK--GHKVEYVPFPCVVKPCCGGSSVGVSIVNSEEEFKRAL--TDAFSYEDNILVE 237

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           +++ G E + GV+   +L V EI  P   FY Y+ KY +  +    PA +P +I +++QR
Sbjct: 238 EFIKGREFSVGVLNGKALPVIEIE-PLDGFYDYKNKYKAGATKETCPANLPKEISEKMQR 296

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
            A  A +  G    +R D L +     ++ LEIN  PGMT  S+ P+ AA  G S+ EL 
Sbjct: 297 WAEKACETAGVTTYARVDELLNE-DGDIYCLEINTLPGMTGTSLLPQEAAAVGMSYDELT 355

Query: 290 LWMVE 294
             ++E
Sbjct: 356 KKIIE 360


>gi|332884259|gb|EGK04527.1| D-alanine-D-alanine ligase [Dysgonomonas mossii DSM 22836]
          Length = 326

 Score =  142 bits (357), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 99/329 (30%), Positives = 165/329 (50%), Gaps = 46/329 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID----------------VDRSV-- 42
           +A++ GG SSE  VS  S     S L+   + + ++                 VD++   
Sbjct: 5   IAIVWGGYSSEVIVSAKSMAGVYSFLDKEKYNLYKVKIVKEGWTVEIDGETHPVDKNDFT 64

Query: 43  --GLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
              L    +K D AF ++HG  GEDG +QA  ++L+IPY+  G++ S+L+M+K      +
Sbjct: 65  FHTLEKEKIKIDFAFIIIHGTPGEDGHLQAYFDMLDIPYSTCGMMPSSLTMNKFVCNNFL 124

Query: 101 SSCGVPVCPSILVNRFTMDSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLD 153
            + G+ V  S+ +N+   DS++ I+        P  +KP  GGSS     +K      +D
Sbjct: 125 RNFGIRVADSLYLNK---DSKYEINNITEKLGLPMFVKPNTGGSSFATTKVKS-----VD 176

Query: 154 LLQSS---SWNHGDQLLIEQYVDGIELTCGVMGDASLDV----TEIAVPKSDFYSYELKY 206
            LQ +   ++     ++IE ++ G E+TCG     + +V    TE+ V  +DF+ Y+ KY
Sbjct: 177 QLQKAIDVAFGETPDVIIESFIKGTEVTCGCYKIKNKEVVFPLTEV-VTSNDFFDYDAKY 235

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
                  + PA+I  +I +E+QRL    +  +G +GI R DF+      K + LE+N  P
Sbjct: 236 EG-QVEEITPARISQEITEEIQRLTRKIYDLVGAKGIIRVDFIIS--DNKPYLLEVNTVP 292

Query: 267 GMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           GMT  S  P+  A AG +  E+L  ++E+
Sbjct: 293 GMTQTSFIPQQVAAAGLNITEVLTEIIEN 321


>gi|320008327|gb|ADW03177.1| D-alanine/D-alanine ligase [Streptomyces flavogriseus ATCC 33331]
          Length = 394

 Score =  142 bits (357), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 109/356 (30%), Positives = 156/356 (43%), Gaps = 71/356 (19%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +AV+ GG SSE  +S+ +  A  SAL+   + V  I + R    VL    P         
Sbjct: 28  VAVVFGGRSSEHGISVVTAGAVMSALDRTKYNVLPIGITRDGRWVLTSDDPARMAITDRQ 87

Query: 52  -----------------------------------------DLAFNVLHGNFGEDGLVQA 70
                                                    D+ F VLHG +GEDG +Q 
Sbjct: 88  VPDVDQLAGSARGAVALSVDPGNRDVVVGEPGSVPEVLGEVDVVFPVLHGPYGEDGTLQG 147

Query: 71  ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP---- 126
            LEL  +PY  +G+L+SA+  DK   K+V  S G+PV P  +V     D+    +     
Sbjct: 148 FLELSGVPYVGAGVLSSAVGQDKEYMKRVFVSFGLPVGPYEVVRPREWDTDRPAARKRVM 207

Query: 127 --------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                   P  +KP +GGSS+GI   K D +  LD     +  H  + L+E  + G E+ 
Sbjct: 208 EFAAEHGWPLFVKPARGGSSMGI--TKVDDAAGLDEAIEEARRHDPKFLVESLLSGREIE 265

Query: 179 CGVM-----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           CGV+       AS+      V   DFY +E KY   ++  ++PA +  +   EVQRLA  
Sbjct: 266 CGVLEFEDGPRASVPAEIPPVTAHDFYDFEAKYID-SAAGLVPAPLTDEQTAEVQRLAVE 324

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           A +A  C G+ R+DF        V   EIN  PG TP+S+FP M   +G  + EL+
Sbjct: 325 AFEAASCEGLVRADFFLTDDGSFVI-NEINTMPGFTPISMFPRMWQASGVEYPELV 379


>gi|319900221|ref|YP_004159949.1| D-alanine--D-alanine ligase [Bacteroides helcogenes P 36-108]
 gi|319415252|gb|ADV42363.1| D-alanine--D-alanine ligase [Bacteroides helcogenes P 36-108]
          Length = 329

 Score =  142 bits (357), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 96/323 (29%), Positives = 167/323 (51%), Gaps = 33/323 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-----------------VDR--- 40
           +A++ GG +SE  VSL S +   S ++   + +  +                  VDR   
Sbjct: 5   IAIVGGGDTSEYHVSLRSAQGIYSFIDKEKYTLYIVQMHGLDWHVLLPDGTAAPVDRNDF 64

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           S  L    +  D A+  +HG  GEDG +Q   ++L IPY+  G+LA++L+ DK    Q +
Sbjct: 65  SFMLDGKKIVFDFAYITIHGTPGEDGRLQGYFDMLHIPYSCCGVLAASLTYDKFACNQFL 124

Query: 101 SSCGVPVCPSILVNRF-TMDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
            + GV +  S+L+ +  T+  + +I     P  IKP  GGSS G+  +KK + I   +  
Sbjct: 125 KAFGVRIAESLLLRKGQTVSDEDVIEKIGLPCFIKPSLGGSSFGVSKVKKREQIQPAI-- 182

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGV--MGDASL--DVTEIAVPKSDFYSYELKYSSLNST 212
           + ++    ++++E +++G ELTCG     D S+   +TE+ V  ++++ YE KY+   S 
Sbjct: 183 AKAFEEAREVVVEAFMEGTELTCGCYKTKDKSIVFPITEV-VTHNEYFDYEAKYNG-ESD 240

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
            + PA+IP  +   VQ+L    +  +G +GI R D++      K+  LE+N  PGMTP S
Sbjct: 241 EITPARIPDGLRDRVQKLTSAIYDILGAQGIIRVDYIVTE-GEKINLLEVNTTPGMTPTS 299

Query: 273 IFPEMAAYAGYSFRELLLWMVED 295
             P+    AG   ++++  ++E+
Sbjct: 300 FIPQQVRAAGLDIKDVMTDIIEN 322


>gi|303238402|ref|ZP_07324937.1| D-alanine/D-alanine ligase [Acetivibrio cellulolyticus CD2]
 gi|302594106|gb|EFL63819.1| D-alanine/D-alanine ligase [Acetivibrio cellulolyticus CD2]
          Length = 377

 Score =  142 bits (357), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 79/254 (31%), Positives = 135/254 (53%), Gaps = 13/254 (5%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+ F VLHG  GEDG +Q + E+  IPY  SG+L SAL MDK+ +K V    GVP    +
Sbjct: 111 DVVFPVLHGCNGEDGTIQGLFEMAGIPYVGSGVLGSALGMDKIYAKIVFEKVGVPQAGYL 170

Query: 112 LVNRFTMDS---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
              R  +           +     P  IKP   GSS+G+      + +   L  ++ ++ 
Sbjct: 171 FFTRKEIKENSDRVADAIEQRFEYPVFIKPSNAGSSVGVSKAHDRRELVEALNFAAKYDR 230

Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVTEIA--VPKSDFYSYELKYSSLNSTHVLPAKIP 220
             ++LIE++++G E+ C V+G+ +   + +   +P ++FY Y  KY   +S  V+PA +P
Sbjct: 231 --KVLIEEFINGREVECAVLGNDNPIASTVGEVIPCNEFYDYNAKYIDGSSKTVIPANLP 288

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280
            D   +++  A  A +A+ C G+SR DF     + +++  EIN  PG T +S++P +   
Sbjct: 289 ADTILKIREYAVKAFKALDCAGLSRVDFFVHKETGEIYINEINTLPGFTNISMYPMLWEA 348

Query: 281 AGYSFRELLLWMVE 294
           +G  + EL+  +++
Sbjct: 349 SGIPYSELIERLID 362


>gi|72382711|ref|YP_292066.1| D-alanyl-alanine synthetase A [Prochlorococcus marinus str. NATL2A]
 gi|123620894|sp|Q46JG5|DDL_PROMT RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|72002561|gb|AAZ58363.1| D-alanine--D-alanine ligase [Prochlorococcus marinus str. NATL2A]
          Length = 348

 Score =  142 bits (357), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 98/341 (28%), Positives = 175/341 (51%), Gaps = 47/341 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASAL----------------EDAGF------------- 31
           + V+ GG SSE EVS+ S K   +AL                +  G+             
Sbjct: 8   IGVVFGGKSSEHEVSIKSAKTIYNALRYLSNKERYIARPIYIDKYGYWHDYIFSESILFD 67

Query: 32  -KVSQIDVDRSVGLV-LAHLKP-DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
            K   I  +R + L  L++++  D+ F  LHG  GEDG++Q + +    P+  SG+L SA
Sbjct: 68  KKDHLIFEERRINLTNLSNMEDIDVWFPCLHGPNGEDGVIQGLFKSTGKPFVGSGVLGSA 127

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNR------FTMDS-----QHLISPPYVIKPLKGGS 137
           L MDK+  K V  S  +P  P I +N+        M S       +IS P  IKP   GS
Sbjct: 128 LGMDKIAMKSVFKSYNLPQVPYISLNKPDIQNNLYMKSIYEQINKIISYPCFIKPANLGS 187

Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK- 196
           S+GI      +     +  ++ ++  +++++E+ ++G EL CG++G + +  + +   K 
Sbjct: 188 SVGITKAYSKEEFIAGIEFAAKYD--ERIIVEKSIEGRELECGILGKSIMKSSVVGEVKF 245

Query: 197 -SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255
            +D+Y+YE KY++  S+ ++PA + ++I  ++Q+LA  A +AI   G++R DF +   ++
Sbjct: 246 QTDWYTYESKYNANLSSTIIPADLNIEISNKIQKLAIEACKAINAYGLARVDFFYQESTQ 305

Query: 256 KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +++  E+N  PG T  S++P +   +G    +L+  ++E A
Sbjct: 306 QIYINEVNTLPGFTKTSMYPTLWEASGLKLEKLVANLIEIA 346


>gi|223984928|ref|ZP_03635031.1| hypothetical protein HOLDEFILI_02333 [Holdemania filiformis DSM
           12042]
 gi|223963097|gb|EEF67506.1| hypothetical protein HOLDEFILI_02333 [Holdemania filiformis DSM
           12042]
          Length = 350

 Score =  141 bits (356), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 103/340 (30%), Positives = 158/340 (46%), Gaps = 47/340 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD--------------------- 39
           +AVL GG S E  VSL S      AL+   + V +I +D                     
Sbjct: 7   VAVLFGGCSDEYSVSLHSAAGVLRALDPERYTVVKIGIDPQGDWFLTSASAAEIEADQWH 66

Query: 40  ----RSVGLVLAH------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
               + + L LA             +  D+ F VLHG  GEDG +Q + EL  IP+   G
Sbjct: 67  TASDQRLRLTLARRNFELKDETGEAVDVDVFFPVLHGRNGEDGTLQGMFELFHIPFVGCG 126

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH----LISPPYVIKPLKGGSSL 139
           + AS L MDK  S Q+    G+ V P ++     +D +      +  P  +KP +GGSS+
Sbjct: 127 MDASLLGMDKALSHQLARQNGIEVSPFVVFAYSEIDQKRESLKRLHLPCFVKPARGGSSI 186

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS---LDVTEIAVPK 196
           GI  I   +   LD   + +  H  ++LIE+ V G E+ C ++       L   +     
Sbjct: 187 GITKINTWEE--LDAACACAAKHDRRILIEEAVSGEEIGCSILETPDGLVLGAVDRIHLN 244

Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256
           SDF+ YE KY   ++    PA++P  + ++++RLA    +   C+G+ R D    P  ++
Sbjct: 245 SDFFDYEEKYVDTHAEVECPAQLPDFVSEQMRRLARKLWEIHHCQGLVRVDCFLTP-DQR 303

Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           + + EIN  PGMT  S +P M   AG SF  +L  ++E+A
Sbjct: 304 ILFNEINTLPGMTATSRYPRMMGQAGISFETILDTLIEEA 343


>gi|163940473|ref|YP_001645357.1| D-alanine--D-alanine ligase [Bacillus weihenstephanensis KBAB4]
 gi|163862670|gb|ABY43729.1| D-alanine--D-alanine ligase [Bacillus weihenstephanensis KBAB4]
          Length = 311

 Score =  141 bits (356), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 91/304 (29%), Positives = 164/304 (53%), Gaps = 11/304 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGG+SSE++VS+ +G    + L+ + +++  I ++  + L+      D A   LHG
Sbjct: 10  IGVIMGGVSSEKQVSIMTGNEMIAHLDKSKYEIVPITLNEKMDLIEKAKDIDFALLALHG 69

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---FT 117
            +GEDG VQ  LE L IPY+ S +L+S + MDK  SK+++   GV     I + +     
Sbjct: 70  KYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNISKKILRYEGVETPDWIELTKMEDLK 129

Query: 118 MDSQHLISPPYVIKPLKGGSSLGI-IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
           ++    +  P V+KP  GGSS+G+ IV  K++ I + L     W+   +++IE+Y+ G E
Sbjct: 130 LEELDKLGFPLVVKPNSGGSSVGVKIVYDKNELISM-LETVFEWDS--EVVIEKYIKGDE 186

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +TC +     L +  I    + F+ Y  KY   ++   +  ++P +I + V + +   ++
Sbjct: 187 ITCSIFDGQQLPIISIR-HAAVFFDYNAKYDDTSTVEEV-IELPAEIKERVNKASLACYK 244

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           A+ C   +R D +        + +E+N  PGMT  S+ P+ A  AG ++ +LL  ++E +
Sbjct: 245 ALKCSVYARVDMMVK--EGIPYVMEVNTLPGMTQSSLLPKSAEAAGINYSKLLDMIIETS 302

Query: 297 SCLR 300
             +R
Sbjct: 303 LKVR 306


>gi|126699011|ref|YP_001087908.1| D-alanine--D-alanine ligase [Clostridium difficile 630]
 gi|254974958|ref|ZP_05271430.1| D-alanine--D-alanine ligase [Clostridium difficile QCD-66c26]
 gi|255092347|ref|ZP_05321825.1| D-alanine--D-alanine ligase [Clostridium difficile CIP 107932]
 gi|255100429|ref|ZP_05329406.1| D-alanine--D-alanine ligase [Clostridium difficile QCD-63q42]
 gi|255314086|ref|ZP_05355669.1| D-alanine--D-alanine ligase [Clostridium difficile QCD-76w55]
 gi|255516765|ref|ZP_05384441.1| D-alanine--D-alanine ligase [Clostridium difficile QCD-97b34]
 gi|255649864|ref|ZP_05396766.1| D-alanine--D-alanine ligase [Clostridium difficile QCD-37x79]
 gi|260683022|ref|YP_003214307.1| D-alanine--D-alanine ligase [Clostridium difficile CD196]
 gi|260686620|ref|YP_003217753.1| D-alanine--D-alanine ligase [Clostridium difficile R20291]
 gi|306519962|ref|ZP_07406309.1| D-alanine--D-alanine ligase [Clostridium difficile QCD-32g58]
 gi|115250448|emb|CAJ68271.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)
           (D-Ala-D-Ala ligase) [Clostridium difficile]
 gi|260209185|emb|CBA62427.1| D-alanine--D-alanine ligase B [Clostridium difficile CD196]
 gi|260212636|emb|CBE03671.1| D-alanine--D-alanine ligase B [Clostridium difficile R20291]
          Length = 299

 Score =  141 bits (356), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 95/300 (31%), Positives = 151/300 (50%), Gaps = 13/300 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVL-- 58
           +AV+MGGISSEREVSL+SGK   + L+   ++V ++ +D     +   +  D+ F +L  
Sbjct: 3   IAVIMGGISSEREVSLNSGKEIYNNLDKNKYEVVKVIIDDKKD-IFTKIPEDIDFAILAL 61

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL---VNR 115
           HG FGEDG +Q+ILE ++IPY+  G L S + MDK  +K+++    +P  P +L   V+ 
Sbjct: 62  HGKFGEDGCIQSILETMDIPYSGCGPLCSGMCMDKNITKKMLRDSNLPTAPWVLVKSVDE 121

Query: 116 FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175
              D    I  P  IKP  GGSS+    I     +   + +    +  + ++IE+Y+ G 
Sbjct: 122 IDYDEIDNIGYPVFIKPNSGGSSVATFFIHSKDEVEEAVRKGLEVD--EFVMIEKYIPGG 179

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
           E T  ++         I    S F+ YE KYS           +  ++ K V  ++    
Sbjct: 180 EYTSFILNGEVFPTISIK-SDSGFFDYEAKYSVEKGAKEEVVYLDEELQKRVNEISETCW 238

Query: 236 QAIGCRGISRSDFLFDPLSRKV-FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           +   C+   R D +   +S  + + LE+N  PGMT  S+ P  AA  G  + ELL  ++E
Sbjct: 239 KIFNCKAYVRVDMI---ISEGIPYVLELNTLPGMTQTSLIPRSAAARGIKYSELLDKLIE 295


>gi|322433980|ref|YP_004216192.1| D-alanine/D-alanine ligase [Acidobacterium sp. MP5ACTX9]
 gi|321161707|gb|ADW67412.1| D-alanine/D-alanine ligase [Acidobacterium sp. MP5ACTX9]
          Length = 372

 Score =  141 bits (356), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 102/346 (29%), Positives = 170/346 (49%), Gaps = 60/346 (17%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS----------------VGL 44
           + VL GG S E EVSL S  +   A++   ++V  I + +                  GL
Sbjct: 8   VGVLFGGRSGEHEVSLLSANSILKAIDRKKYEVVPIGITKQGRWLGGDGAKGLLTGDSGL 67

Query: 45  VLAHLKP-----------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87
            L+                     D+ F VLHG FGEDG +Q +LEL ++ Y  SG+L S
Sbjct: 68  TLSASAQVTETGLIEQSGGVIGALDVIFPVLHGTFGEDGTIQGMLELADLAYVGSGVLGS 127

Query: 88  ALSMDKMRSKQVVSSCGVPVCP--SILVNRFTMDS-------QHLISPPYVIKPLKGGSS 138
           A  MDK   K++ ++ G+P  P  S+L + +  D+       +  +  P  +KP   GSS
Sbjct: 128 AAGMDKDVMKKLFAAAGLPQTPYLSVLRSEWKADAKGCRKRIEKALEYPLFVKPANLGSS 187

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-----IELTCGVMGDASLDVTEIA 193
           +GI  +     +   +  ++ ++   +L++EQ V G      EL   V+G+ +L+ + + 
Sbjct: 188 VGISKVHGRDELAAAMDLAAGFDR--KLVVEQGVGGPGAKPRELEVAVLGNETLEASVVG 245

Query: 194 --VPKSDFYSYELKYSSLN----STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
             VP  +FY YE KY  +N    S  ++PAK+     K+++ +A  A +A  C G++R D
Sbjct: 246 EIVPAKEFYDYEAKY-QMNGPDESVCIIPAKLSASEQKQMRAMAMEAFRACDCSGLARVD 304

Query: 248 FLFDPLSR----KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           FL +P ++    K +  EIN  PG T +S++P++   +G  + EL+
Sbjct: 305 FLMEPAAKGKKAKFYLNEINTMPGFTSISMYPKLWGASGVGYTELI 350


>gi|156935075|ref|YP_001438991.1| hypothetical protein ESA_02926 [Cronobacter sakazakii ATCC BAA-894]
 gi|156533329|gb|ABU78155.1| hypothetical protein ESA_02926 [Cronobacter sakazakii ATCC BAA-894]
          Length = 366

 Score =  141 bits (356), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 97/347 (27%), Positives = 170/347 (48%), Gaps = 57/347 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------------------- 40
           + ++ GG S+E EVSL S K    A++   F V  + +D+                    
Sbjct: 6   VGIVFGGKSAEHEVSLQSAKNIVDAIDKEKFDVVLLGIDKQGQWHVNDASRYLLNAEDPA 65

Query: 41  ---------SVGLV--------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEI 77
                    +V L+               A  + D+ F ++HG  GEDG +Q +L +  I
Sbjct: 66  RIALHRSEKNVALIPGLSEQQLIESDNRQALPQLDVIFPIVHGTLGEDGSLQGMLRMANI 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM------DSQHLISPPYVIK 131
           P+  SG+L SA+SMDK  +K+++   G+ V P I + R         D +  +  P  +K
Sbjct: 126 PFVGSGVLGSAVSMDKDVAKRLLRDAGLAVAPFITLTRANRQRITFEDVKAQLGLPLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT- 190
           P   GSS+G+  +  +      +  +  ++H  ++++E  + G E+ C V+G+ S   + 
Sbjct: 186 PANQGSSVGVSKVNDEAQYHAAVALAFEFDH--KVVVETGIKGREIECAVLGNDSPQAST 243

Query: 191 --EIAVPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
             EI V  S+FYSY++KY    +   V+PA I  D+ ++++ +A  A QA+ C G++R D
Sbjct: 244 CGEIVV-SSEFYSYDIKYIDDQAARVVVPADIAPDVNEKIRAIAIRAFQALECAGLARVD 302

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
               P   +V   EIN  PG T +S++P++   +G  ++EL+  ++E
Sbjct: 303 VFLTP-DNEVIINEINTLPGFTNISMYPKLWQASGIGYQELITRLIE 348


>gi|325912908|ref|ZP_08175285.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus iners
           UPII 60-B]
 gi|329919818|ref|ZP_08276769.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus iners
           SPIN 1401G]
 gi|325477796|gb|EGC80931.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus iners
           UPII 60-B]
 gi|328937165|gb|EGG33593.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus iners
           SPIN 1401G]
          Length = 361

 Score =  141 bits (356), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 103/343 (30%), Positives = 172/343 (50%), Gaps = 50/343 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALE------------DAGFKVS-------------Q 35
           + ++ GG SSE EVS+ SG+    A++            + GF  S             Q
Sbjct: 7   VGLIFGGNSSEYEVSIISGRNIYKAIDKEKYDVYPMWITNTGFLASDADSRKVLEDPTYQ 66

Query: 36  IDVDRSV----GLVLAHLKP--DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
           I+  R+V     ++    +P  D+ F ++HGN GEDG +Q +L +L+ P+    +LA+A+
Sbjct: 67  IENPRTVTNISNVIELSNRPEIDVFFPIVHGNLGEDGCLQGLLRILDKPFVGDDVLAAAI 126

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYV---------IKPLKGGSS 138
           +MDK  +K +    GVPV   I + RF  D      +S  YV         +KP   GSS
Sbjct: 127 TMDKELNKIMAQRAGVPVAKWISIKRFEYDDAKNEKLSYDYVSQQLGTDLFVKPSNQGSS 186

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVP 195
           +GI  +         L +  ++ + D++L+E+ + G E+   V+G+    V+   +I   
Sbjct: 187 VGISHVTSASDYKAALAE--AFKYDDKVLVEETIKGTEVETAVLGNDDAIVSGVGQITNA 244

Query: 196 KSDFYSYELKYSSLNSTHVL--PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
           +  +YSYE KY+  NST  L  PA +P +I + V+R A   + A  C G++R D +    
Sbjct: 245 QGSWYSYENKYND-NSTSKLQIPAALPSEIIETVRRQALKVYHATECSGLARVDSMLTTD 303

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             KV + E+N  PG T +S++P++   AG  + EL+  +++ A
Sbjct: 304 GHKVIFNELNALPGFTNISMYPKLFEEAGIPYAELITKLLDYA 346


>gi|154267916|gb|ABS72052.1| VanG-like protein [Ruminococcus gauvreauii]
          Length = 348

 Score =  141 bits (356), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 88/245 (35%), Positives = 133/245 (54%), Gaps = 11/245 (4%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           DLAF VLHG  GEDG VQ +LEL  IP    G+LASAL MDK R+ ++  + G+ V P  
Sbjct: 99  DLAFPVLHGKNGEDGTVQGLLELAGIPIVGCGVLASALCMDKDRAHRLAGAAGISV-PKA 157

Query: 112 LVNRFTMDSQHLISP-----PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQL 166
           +V +     + ++ P     P  +KP++ GSS GI  I  +    LD   S+++ H D++
Sbjct: 158 VVLQKHQKCRAVVLPEDFTYPLFVKPVRAGSSCGIAKIYGEGE--LDAAVSAAFCHDDEV 215

Query: 167 LIEQYVDGIELTCGVMGDASLDVTEIAVPK--SDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           ++E+ VDG E+ C ++G   L V  +   +    F+ +  KY+  +S   +PA+I     
Sbjct: 216 IVEENVDGFEVGCAILGMDVLTVGRVDEIELTGGFFDFTEKYALKHSRIHMPARIDAKTE 275

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
           +++Q  A   +Q +GC G +R D    P S  V + E+N  PG T  S +P M    G S
Sbjct: 276 QKIQETAKNIYQVLGCSGFARVDMFLTP-SGDVVFNEVNTIPGFTAHSRYPNMMKGIGLS 334

Query: 285 FRELL 289
           F +LL
Sbjct: 335 FEQLL 339


>gi|242240647|ref|YP_002988828.1| D-alanine/D-alanine ligase [Dickeya dadantii Ech703]
 gi|242132704|gb|ACS87006.1| D-alanine/D-alanine ligase [Dickeya dadantii Ech703]
          Length = 366

 Score =  141 bits (356), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 97/347 (27%), Positives = 166/347 (47%), Gaps = 57/347 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD--------------------- 39
           + V+ GG SSE EVSL S K    A++   F V  + +D                     
Sbjct: 6   VGVVFGGKSSEHEVSLQSAKNIVDAIDKTRFDVVLLGIDKQGAWHLNDASNYLLNANNPS 65

Query: 40  --------RSVGLV--------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEI 77
                   R++ LV               A  + D+ F ++HG  GEDG +Q +L +  I
Sbjct: 66  LIALNRSSRNIALVPGQSHNQLIETSNASALSQIDVIFPIVHGTLGEDGSLQGLLRMANI 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIK 131
           P+  S +L SA+SMDK  +K+++   G+ V P + + R   +  H       +  P  IK
Sbjct: 126 PFVGSSVLGSAVSMDKDVTKRLLRDTGLMVAPFVTLTRANRERHHFADITARLGLPLFIK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT- 190
           P   GSS+G+  ++ +      +  + S++H  ++L+E  + G E+ C V+G+   + + 
Sbjct: 186 PANQGSSVGVSKVRNEAQYQQAVELAFSYDH--KVLVESAIVGREIECAVLGNDHPEASV 243

Query: 191 --EIAVPKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
             EI V   +FYSY+ KY S +   V +PA +P   ++ ++ +A  A QA+ C+G++R D
Sbjct: 244 CGEIVV-HDEFYSYDTKYISEDGAAVAIPAPMPDSTHQRIREIAVQAFQALDCQGMARVD 302

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
               P    V   E+N  PG T +S++P++    G  +  L+  ++E
Sbjct: 303 VFLTP-QEDVIVNEVNTLPGFTNISMYPKLWEATGIGYTALITRLIE 348


>gi|332978064|gb|EGK14802.1| D-alanine-D-alanine ligase [Desmospora sp. 8437]
          Length = 367

 Score =  141 bits (356), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 80/254 (31%), Positives = 135/254 (53%), Gaps = 13/254 (5%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+ F VLHG FGEDG +Q +LE+ +IPY  +G+LASA+ MDK+  K++ +  G+P     
Sbjct: 97  DVVFPVLHGTFGEDGTIQGMLEIADIPYVGAGVLASAVGMDKVMMKKIFAQEGLPQGDFT 156

Query: 112 LVNRFTMDS---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
              R  ++          +   + P  +KP   GSS+GI   K  + +   L  ++ ++ 
Sbjct: 157 FCLRRAIEQDIDTVISGIEAEFAYPCFVKPANLGSSVGISKAKNREELKGALQLAARYDR 216

Query: 163 GDQLLIEQYVDGIELTCGVMGDAS--LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
             ++++E+++D  E+   V+G+      V    V  +DFY Y  KY    S   +PA +P
Sbjct: 217 --KVIVEEFIDAREVEVAVLGNEEPVASVPGEIVSSNDFYDYRAKYIDGKSEMRIPADLP 274

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280
             + +E+  LA  A+Q I C G++R DF       K+   EIN  PG TP S++  +  +
Sbjct: 275 EPVLEEISGLALKAYQGIDCSGLARVDFFIRKSDGKILINEINTMPGFTPFSMYANLWKH 334

Query: 281 AGYSFRELLLWMVE 294
           +G S+ EL+  +++
Sbjct: 335 SGISYPELISRLID 348


>gi|229011881|ref|ZP_04169061.1| D-alanine--D-alanine ligase [Bacillus mycoides DSM 2048]
 gi|228749295|gb|EEL99140.1| D-alanine--D-alanine ligase [Bacillus mycoides DSM 2048]
          Length = 304

 Score =  141 bits (356), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 87/303 (28%), Positives = 160/303 (52%), Gaps = 9/303 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGG+SSE++VS+ +G    + L+ + +++  I ++  + L+      D A   LHG
Sbjct: 3   IGVIMGGVSSEKQVSIMTGNEMIAHLDKSKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---FT 117
            +GEDG VQ  LE L IPY+ S +L+S + MDK  SK+++   GV     I + +     
Sbjct: 63  KYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNISKKILRYEGVETPDWIELTKMEDLK 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
           ++    +  P V+KP  GGSS+G+ ++     +   L     W+   +++IE+Y+ G E+
Sbjct: 123 LEELDKLGFPLVVKPNSGGSSVGVKIVYDKNELTSMLETVFEWDS--EVVIEKYIKGDEI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC +     L +  I    + F+ Y  KY   ++   +  ++P +I + V + +   ++A
Sbjct: 181 TCSIFDGQQLPIISIR-HAAVFFDYNAKYDDTSTVEEV-IELPAEIKERVNKASLACYKA 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           + C   +R D +        + +E+N  PGMT  S+ P+ A  AG ++ +LL  ++E + 
Sbjct: 239 LKCSVYARVDMMVK--EGIPYVMEVNTLPGMTQSSLLPKSAEAAGINYSKLLDMIIETSL 296

Query: 298 CLR 300
            +R
Sbjct: 297 KVR 299


>gi|325920616|ref|ZP_08182529.1| D-alanine--D-alanine ligase [Xanthomonas gardneri ATCC 19865]
 gi|325548907|gb|EGD19848.1| D-alanine--D-alanine ligase [Xanthomonas gardneri ATCC 19865]
          Length = 380

 Score =  141 bits (356), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 102/347 (29%), Positives = 172/347 (49%), Gaps = 57/347 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD--------------------- 39
           + ++ GG S+E EVSL S +    AL+   F+   I +D                     
Sbjct: 19  VGLIFGGKSAEHEVSLQSARNILDALDPQRFEPVLIGIDKQGQWHVNDPDSFLLNADDPA 78

Query: 40  --------RSVGLVL-AH---LKP----------DLAFNVLHGNFGEDGLVQAILELLEI 77
                   R V L+  AH   L+P          D+ F ++HG  GEDG +Q +L +  +
Sbjct: 79  RIALHRSGRGVALLPGAHQQQLRPTQPEQALAQIDVVFPIVHGTLGEDGSLQGLLRMANL 138

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT---MDSQHLISP---PYVIK 131
            +  SG+L SA++MDK  +K+V+   G+ V P +  NR T    D   L++    P  +K
Sbjct: 139 AFVGSGVLGSAVAMDKDMAKRVLRDAGLEVAPFVCFNRHTAAHADVHALVAQFGLPLFVK 198

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT- 190
           P   GSS+G+  ++  +     L  + +++H  ++L+E  V G E+ C V+G+A+   + 
Sbjct: 199 PANQGSSVGVSQVRTAEQFAAALALALAYDH--KVLVEAAVTGREIECAVLGNATPQASV 256

Query: 191 --EIAVPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
             E+ V  + FYSY+ KY S +    V+PA I     + +Q++A  A+QA+ C G++R D
Sbjct: 257 CGEVVVHDA-FYSYQTKYISEHGAEIVIPANIDAQTQQRIQQIAVQAYQALDCAGMARVD 315

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
                  R V   E+N  PG T +S++P++   +G  +R L+  ++E
Sbjct: 316 VFLCADGRIVIN-EVNTLPGFTRISMYPKLWQASGLDYRSLITQLIE 361


>gi|260890294|ref|ZP_05901557.1| D-alanine--D-alanine ligase [Leptotrichia hofstadii F0254]
 gi|260859914|gb|EEX74414.1| D-alanine--D-alanine ligase [Leptotrichia hofstadii F0254]
          Length = 323

 Score =  141 bits (356), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 89/305 (29%), Positives = 161/305 (52%), Gaps = 16/305 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--LAHLKPDLAFNVL 58
           + V+ GG+S+EREVSL +G    + L    ++V  I +D  + +   +  L  D  +  L
Sbjct: 21  VGVIRGGVSTEREVSLKTGSEIVANLNRDKYEVFDIVIDSEMEVFEKVKDLNLDFVYIAL 80

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC--PSILVNRF 116
           HG FGEDG +QAIL+ L + Y+  G+++SA+ MDK  SK++V+  GV +    S+ V   
Sbjct: 81  HGVFGEDGRIQAILQSLGVAYSGPGVMSSAVCMDKEFSKRIVAGYGVRIAKWKSVRVGE- 139

Query: 117 TMDSQHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIP--LDLLQSSSWNHGDQLLIEQY 171
           T+D + +   +    V+KP  GGSS+G+  ++  + +   L+L+    +    + LIE+ 
Sbjct: 140 TVDFETIKKELGNRVVVKPNNGGSSIGVSFVENQEELEKGLELV----FGMDKEALIEEV 195

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G+E++  V+         I     D++ YE KY+   +   +  + P  +  E+ + A
Sbjct: 196 LHGVEISVPVIDGEVFPTLRIEALAGDYFDYESKYAKGGANEYV-FEFPEKVQAEINKFA 254

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             ++  + C G +R DF+        +++E+N  PGMT  S+ P+  A  GY + + L  
Sbjct: 255 KDSYYGLKCEGFARIDFMV-VNEETPYFMEVNTSPGMTSASLLPKSTASKGYDYSQTLDL 313

Query: 292 MVEDA 296
           ++E +
Sbjct: 314 LIESS 318


>gi|229060293|ref|ZP_04197660.1| D-alanine--D-alanine ligase [Bacillus cereus AH603]
 gi|229167456|ref|ZP_04295194.1| D-alanine--D-alanine ligase [Bacillus cereus AH621]
 gi|228616018|gb|EEK73105.1| D-alanine--D-alanine ligase [Bacillus cereus AH621]
 gi|228719020|gb|EEL70636.1| D-alanine--D-alanine ligase [Bacillus cereus AH603]
          Length = 304

 Score =  141 bits (356), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 91/304 (29%), Positives = 164/304 (53%), Gaps = 11/304 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGG+SSE++VS+ +G    + L+ + +++  I ++  + L+      D A   LHG
Sbjct: 3   IGVIMGGVSSEKQVSIMTGNEMIAHLDKSKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---FT 117
            +GEDG VQ  LE L IPY+ S +L+S + MDK  SK+++   GV     I + +     
Sbjct: 63  KYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNISKKILRYEGVETPDWIELTKMEDLK 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGI-IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
           ++    +  P V+KP  GGSS+G+ IV  K++ I + L     W+   +++IE+Y+ G E
Sbjct: 123 LEELDKLGFPLVVKPNSGGSSVGVKIVYDKNELISM-LETVFEWDS--EVVIEKYIKGDE 179

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +TC +     L +  I    + F+ Y  KY   ++   +  ++P +I + V + +   ++
Sbjct: 180 ITCSIFDGQQLPIISIR-HAAVFFDYNAKYDDTSTVEEV-IELPAEIKERVNKASLACYK 237

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           A+ C   +R D +        + +E+N  PGMT  S+ P+ A  AG ++ +LL  ++E +
Sbjct: 238 ALKCSVYARVDMMVK--EGIPYVMEVNTLPGMTQSSLLPKSAEAAGINYSKLLDMIIETS 295

Query: 297 SCLR 300
             +R
Sbjct: 296 LKVR 299


>gi|148271442|ref|YP_001221003.1| putative D-alanine--D-alanine ligase [Clavibacter michiganensis
           subsp. michiganensis NCPPB 382]
 gi|147829372|emb|CAN00285.1| putative D-alanine--D-alanine ligase [Clavibacter michiganensis
           subsp. michiganensis NCPPB 382]
          Length = 335

 Score =  141 bits (356), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 105/325 (32%), Positives = 159/325 (48%), Gaps = 43/325 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH---------LKP 51
           ++VL GG S ER+VS++S      AL   G +V  +D  R      A          ++P
Sbjct: 3   ISVLFGGESEERDVSIASAAQVVPALRALGHEVVAVDTARGALDAAAEARILTPDVGVRP 62

Query: 52  ---------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84
                                      DL F  LHG  GEDG +QA+LEL  IP+T SG 
Sbjct: 63  PTSAELATAAAGGSAAVLRLPADLRDGDLVFLALHGGSGEDGRLQALLELAGIPFTGSGS 122

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
           L SAL+MDK  +K ++ + GV   P  +++      +  +  P V+KP   GS++G+ V+
Sbjct: 123 LGSALAMDKDVAKTLLRAGGV-RTPDWIIDPEPDAVEPALGFPVVVKPTGQGSTVGLSVV 181

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYEL 204
           +  + +P  L    +  HG  +++E++V G ELT GV+   +L V EI VP  + ++Y  
Sbjct: 182 RAAEELPAAL--ELARRHG-TVMVERFVRGRELTVGVLDGEALAVGEIGVPVDEAFTYAA 238

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW-LEIN 263
           KY +       PA +P ++ +E +  A  AH+ +   G SRSDF  D       W +E N
Sbjct: 239 KYQAGAIAETFPADLPSEVAEEARAAALAAHRILRLAGYSRSDFRLD--DAGALWIIEAN 296

Query: 264 VQPGMTPVSIFPEMAAYAGYSFREL 288
             PG+T  S+ P+ AA  G  + EL
Sbjct: 297 SLPGLTATSLLPQSAAAVGIGYPEL 321


>gi|183221247|ref|YP_001839243.1| D-alanyl-alanine synthetase A [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
 gi|189911338|ref|YP_001962893.1| D-alanyl-alanine synthetase A [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|190359161|sp|B0S9U5|DDL_LEPBA RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|229485962|sp|B0SS77|DDL_LEPBP RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|167776014|gb|ABZ94315.1| D-alanine--D-alanine ligase [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167779669|gb|ABZ97967.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetase B;
           D-Ala-D-Ala ligase B) [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
          Length = 349

 Score =  141 bits (356), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 87/255 (34%), Positives = 138/255 (54%), Gaps = 20/255 (7%)

Query: 54  AFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
           AF  LHG  GEDG +Q  L+ L IP+T SG+LAS+L+MDK R+  +  + G+PV P + +
Sbjct: 97  AFLGLHGGAGEDGRIQGFLDTLGIPHTGSGVLASSLAMDKYRANILFEAMGIPVAPFLEL 156

Query: 114 NRFTMDSQHLI-----SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168
            +   D +  +     S P  IKP  GGSS+   + K  +      L    +   D++L+
Sbjct: 157 EKGKTDPRKTLLNLSFSYPVFIKPTLGGSSVNTGMAKTAEEA--MTLVDKIFVTDDRVLV 214

Query: 169 EQYVDGIELTCGVMGDAS--------LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
           ++ V G E++ GV+            L  TEI  PKS+F+ +E KY+   S  + PA + 
Sbjct: 215 QKLVSGTEVSIGVLEKPEGKKRNPFPLVPTEIR-PKSEFFDFEAKYTKGASEEITPAPVG 273

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV-FWLEINVQPGMTPVSIFPEMAA 279
            ++ K +Q      H+ +GC+G SR+DF+   +S  V + LE N  PGMT  S+ P+ A 
Sbjct: 274 DEVTKTLQEYTLRCHEILGCKGYSRTDFI---ISDGVPYVLETNTLPGMTGTSLIPQQAK 330

Query: 280 YAGYSFRELLLWMVE 294
             G + +++  W++E
Sbjct: 331 ALGINMKDVFTWLLE 345


>gi|326330648|ref|ZP_08196952.1| D-alanine--D-alanine ligase [Nocardioidaceae bacterium Broad-1]
 gi|325951489|gb|EGD43525.1| D-alanine--D-alanine ligase [Nocardioidaceae bacterium Broad-1]
          Length = 318

 Score =  141 bits (355), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 97/310 (31%), Positives = 168/310 (54%), Gaps = 18/310 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AV+ GG+S ER+VSL+SG+     L   G +V+  D DR++   L   K  +A   LHG
Sbjct: 10  VAVIAGGLSHERDVSLASGRNLVRELSALGVEVAAYDFDRALLHNLERDKAVVALPALHG 69

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG +Q +LEL+ IPY  +   +  ++ DK  +++++   G+PV  S+ ++  T   
Sbjct: 70  QFGEDGEIQTLLELIGIPYVGTVSTSCRVAFDKAAARELLRRGGIPVPDSVSLSSTTFRD 129

Query: 121 -------QHLIS---PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +H+IS      V+KP +GGS+LG+  +    ++P  L++  ++ + D+ LIE+
Sbjct: 130 VGAPVLMEHVISRMGERVVVKPSRGGSALGVTGVDGLSALPAALVK--TYAYCDEALIER 187

Query: 171 YVDGIELTCGV--MGDASLDVTEIAV--PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE 226
           +  GI+++  V    + +  +T IA+   K   + +  +Y++       P  +P  +  E
Sbjct: 188 FYAGIDVSVVVHETDEGTKPLTPIAIDFSKGHEFDFAARYTAEFVGFGRP-DLPDALLTE 246

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           +   A  AH+ +G R ISR+DF+  P    V  LE+ + PG T  S+FP  A + G S  
Sbjct: 247 LGETAVRAHELLGMRDISRTDFMVTPDGGFVV-LEVAITPGATETSVFPFAAKHDGTSMG 305

Query: 287 ELLLWMVEDA 296
           E+ L +++ A
Sbjct: 306 EVTLALLKRA 315


>gi|260434898|ref|ZP_05788868.1| D-alanine--D-alanine ligase [Synechococcus sp. WH 8109]
 gi|260412772|gb|EEX06068.1| D-alanine--D-alanine ligase [Synechococcus sp. WH 8109]
          Length = 350

 Score =  141 bits (355), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 79/258 (30%), Positives = 145/258 (56%), Gaps = 15/258 (5%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           DL + VLHG  GEDG +Q + +L   P+  +G+L SA+SMDK+  K   +S G+   P +
Sbjct: 93  DLWYPVLHGPNGEDGTIQGLFQLTGKPFVGAGVLGSAVSMDKLAMKSAFASAGLSQVPYV 152

Query: 112 LVNRFTMDS-----------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160
            ++   +++           +  ++ PY +KP   GSS+GI  ++  + +   L Q+++ 
Sbjct: 153 ALHASELENAISRSALLDRIERELNYPYFVKPANLGSSVGISKVRSRKELEAGLDQAAAL 212

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK--SDFYSYELKYSSLNSTHVLPAK 218
           +   +L++EQ V+  E+ C V+G   L+ + I   +  +D+Y YE KY++  ST ++PA 
Sbjct: 213 D--PRLVVEQGVNAREVECAVLGGRMLEASLIGEVRFDADWYDYETKYTAGRSTTLIPAP 270

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278
           +P ++   ++  A  A  A+G  G+ R DF +D  + +++  EIN  PG T  S+FP + 
Sbjct: 271 LPDEVADRIRAQALQACAAVGVNGMGRVDFFYDDANDQLWINEINTLPGFTAQSMFPMLW 330

Query: 279 AYAGYSFRELLLWMVEDA 296
           A +G +  +L+  +++ A
Sbjct: 331 AASGVTVEQLVHKLIQTA 348


>gi|255536312|ref|YP_003096683.1| D-alanyl-alanine synthetase A [Flavobacteriaceae bacterium 3519-10]
 gi|255342508|gb|ACU08621.1| D-alanine--D-alanine ligase [Flavobacteriaceae bacterium 3519-10]
          Length = 339

 Score =  141 bits (355), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 103/325 (31%), Positives = 167/325 (51%), Gaps = 35/325 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40
           +AV+MGG S E  VSL SG+    +L+   + V ++ V                    D 
Sbjct: 17  VAVVMGGYSDEYVVSLKSGQLIYDSLDRDSYNVYKVIVLKDEWYFLDDREQKVPVNKADF 76

Query: 41  SVGLVLA-HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
           SV L     +K D+ FN++HG  GE+G +QA  + +   YT  G   SAL+ +K  +  V
Sbjct: 77  SVNLDSGFDVKFDVCFNIIHGKPGENGELQAYWDTIGQKYTGCGFYQSALTFNKKDTLAV 136

Query: 100 VSSCGVPVCPSILVNR-FTMDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
           +S  G+P   S+ + +   +D   +I     P  +KP + GSSLGI  +K        + 
Sbjct: 137 LSKYGIPAAKSVYIRKGEAIDEDGIIEDLKLPLFVKPNQSGSSLGISKVKDKSEFQKAI- 195

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVM---GDA-SLDVTEIAVPKSDFYSYELKYSSLNS 211
              ++   D++LIE ++DG+E++ GV+   G++  L +TEI V   +F+ YE KY    S
Sbjct: 196 -DFAFEQDDEVLIESFLDGMEVSVGVVDFNGESIVLGITEI-VSHKEFFDYEAKYEGA-S 252

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271
             + PA+I  +  ++V+ +A  A+ ++G  G SRS+F+   +    + LE+N  PG +P 
Sbjct: 253 EEITPARIDDETRQKVEEIAKKAYNSLGMSGFSRSEFII--MGGTPYMLEMNTNPGFSPA 310

Query: 272 SIFPEMAAYAGYSFRELLLWMVEDA 296
           SI P+ A   G S ++L    VE A
Sbjct: 311 SILPQQAKIYGISIKDLCGNEVEKA 335


>gi|282897252|ref|ZP_06305254.1| D-alanine--D-alanine ligase [Raphidiopsis brookii D9]
 gi|281197904|gb|EFA72798.1| D-alanine--D-alanine ligase [Raphidiopsis brookii D9]
          Length = 357

 Score =  141 bits (355), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 97/340 (28%), Positives = 162/340 (47%), Gaps = 48/340 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASAL------------------------EDAGFKVSQI 36
           + +L GG S E EVS+ S  A A AL                        E+   KV + 
Sbjct: 6   VGLLFGGRSGEHEVSIVSAGAIAKALTTGENSQKYELYPFYIQKDGVWQGEEIARKVLES 65

Query: 37  DVDRSVGLVLAHL--------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
              +   L   +L        + DL F +LHG  GEDG +Q +L L+++P+  SG+L SA
Sbjct: 66  GSAQENNLTGVNLWQFPQQSPQIDLWFPILHGPNGEDGTIQGLLTLMQVPFVGSGVLGSA 125

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP------------PYVIKPLKGG 136
           + MDK+  K   +  G+P      V R  + S   + P            P  +KP   G
Sbjct: 126 MGMDKIAMKTAFAQAGLPQVQYQTVTRSQIWSNPCVFPKLCDQIETTLGYPCFVKPANLG 185

Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD--ASLDVTEIAV 194
           SS+GI  ++  Q +   L  +++++   ++++E  V   E+ C V+G+  A   V     
Sbjct: 186 SSVGIAKVRSRQQLETALDSAATYDR--RIIVEAGVVAREVECAVLGNDHAQASVVGEIT 243

Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
             SDFY YE KY+   +  ++PA +P  I +++Q ++  A  A+   G++R DF +   +
Sbjct: 244 FNSDFYDYETKYTQGKANLLIPAPLPQTIVEQIQEMSLKAFAAVDAAGLARVDFFYVEST 303

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            ++   EIN  PG T  S++P++ A  G SF +L+  +++
Sbjct: 304 GEILINEINTLPGFTSTSMYPQLWANTGISFPQLVDQLIQ 343


>gi|291541890|emb|CBL15000.1| D-alanine--D-alanine ligase [Ruminococcus bromii L2-63]
          Length = 355

 Score =  141 bits (355), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 105/345 (30%), Positives = 162/345 (46%), Gaps = 56/345 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------------------- 38
           + VL GG+S+EREVS+SSG   A AL   G +V  +DV                      
Sbjct: 3   IVVLAGGLSTEREVSISSGTLVAEALRSKGHEVVLLDVFMGYEENICDIDALFKQNYSFT 62

Query: 39  ---------------------------DRSVGLVLAHL--KPDLAFNVLHGNFGEDGLVQ 69
                                       R +G  +  +  + D+ F  LHG  GE+G +Q
Sbjct: 63  DGNSIGDDVENTITNIKEAKENRLDKTSRYIGRNVIEICAEADITFLALHGGEGENGQLQ 122

Query: 70  AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYV 129
           A L+L  I YT SG L SAL+M+K  +K V     +   PS  + +   D+      P +
Sbjct: 123 ATLDLFGIKYTGSGYLGSALAMNKGLTKSVFMQKNINT-PSGELYKNEKDALAWNMFPCI 181

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           +KP  GGSS+G+  ++        + ++  +   D++++EQ+V G E + G++G  +L  
Sbjct: 182 VKPCSGGSSVGVSKVENADQYKKAVKEALKYE--DEIVVEQFVTGREFSVGLIGGKALPP 239

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
            EIA PKS  Y Y  KY +  +    PA I  +  K+++  A  A++A+     +R DFL
Sbjct: 240 IEIA-PKSGMYDYAAKYQAGATVETCPADIDEETDKKLRDAATEAYEALHLESYARIDFL 298

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            D      + LE N  PGMTP S+ P+ AA  G S+ +L   ++E
Sbjct: 299 LDK-GGFTYCLEANTLPGMTPTSLLPQEAAVEGISYPDLCEKIIE 342


>gi|255655421|ref|ZP_05400830.1| D-alanine--D-alanine ligase [Clostridium difficile QCD-23m63]
 gi|296451413|ref|ZP_06893150.1| D-alanine--D-alanine ligase [Clostridium difficile NAP08]
 gi|296880238|ref|ZP_06904204.1| D-alanine--D-alanine ligase [Clostridium difficile NAP07]
 gi|296259680|gb|EFH06538.1| D-alanine--D-alanine ligase [Clostridium difficile NAP08]
 gi|296428827|gb|EFH14708.1| D-alanine--D-alanine ligase [Clostridium difficile NAP07]
          Length = 299

 Score =  141 bits (355), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 95/300 (31%), Positives = 151/300 (50%), Gaps = 13/300 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVL-- 58
           +AV+MGGISSEREVSL+SGK   + L+   ++V ++ +D     +   +  D+ F +L  
Sbjct: 3   IAVIMGGISSEREVSLNSGKEIYNNLDKNKYEVVKVIIDDKKD-IFTKIPEDIDFAILAL 61

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL---VNR 115
           HG FGEDG +Q+ILE ++IPY+  G L S + MDK  +K+++    +P  P +L   V+ 
Sbjct: 62  HGKFGEDGCIQSILETMDIPYSGCGPLCSGMCMDKNITKKMLRDSNLPTAPWVLVKSVDE 121

Query: 116 FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175
              D    I  P  IKP  GGSS+    I     +   + +    +  + ++IE+Y+ G 
Sbjct: 122 IDYDEIDNIGYPVFIKPNSGGSSVATFFIHSKDEVGEAVRKGLEVD--EFVMIEKYIPGG 179

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
           E T  ++         I    S F+ YE KYS           +  ++ K V  ++    
Sbjct: 180 EYTSFILNGEVFPTISIK-SDSGFFDYEAKYSVEKGAKEEVVYLDEELQKRVNEISETCW 238

Query: 236 QAIGCRGISRSDFLFDPLSRKV-FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           +   C+   R D +   +S  + + LE+N  PGMT  S+ P  AA  G  + ELL  ++E
Sbjct: 239 KIFNCKAYVRVDMI---ISEGIPYVLELNTLPGMTQTSLIPRSAAARGIKYSELLDKLIE 295


>gi|168185902|ref|ZP_02620537.1| D-alanine--D-alanine ligase [Clostridium botulinum C str. Eklund]
 gi|169295873|gb|EDS78006.1| D-alanine--D-alanine ligase [Clostridium botulinum C str. Eklund]
          Length = 343

 Score =  141 bits (355), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 100/334 (29%), Positives = 171/334 (51%), Gaps = 43/334 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI-------------DVDR------- 40
           +A+L GG S+E EVS  S  +    ++ + + V  I             D+D+       
Sbjct: 5   VAILFGGQSTEHEVSRISASSVLKNIDLSKYDVYPIGITKDGRWFEYTGDIDKIESGEWE 64

Query: 41  --------SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
                   +   +L + + D+ F V+HG +GEDG +Q + +LL IP    G++ASA+ MD
Sbjct: 65  KDEFYKNPNGQEILFNREVDVVFPVMHGLYGEDGTIQGLCKLLNIPCVGPGVMASAVCMD 124

Query: 93  KMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSLGIIV 143
           K+ +K V+ + GV     ++VN     +         ++ +     IKP   GSS+GI  
Sbjct: 125 KVYTKYVLENFGVKQADYVVVNAHDYKNKKTDIISTIENKLGYDVFIKPSNSGSSVGISK 184

Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT--EIAVPKSDFY 200
               Q +   L ++  ++   ++L+E  ++  E+   V+G D  +  T  EI VP ++FY
Sbjct: 185 AHNRQELESGLEEALKFDR--KVLVEVALNAREIEVAVLGNDEPMAATPGEI-VPANEFY 241

Query: 201 SYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260
            YE KYS+  S  +LPA + L+  ++V+ LA    + + C G+SR DFL D  + +V+  
Sbjct: 242 DYEAKYSNAQSKLLLPANLSLEKLEKVKELAVKIFKMLDCAGMSRVDFLVDKETEEVYLN 301

Query: 261 EINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           EIN  PG T +S++P+M    G ++ EL+  ++E
Sbjct: 302 EINTIPGFTKISMYPKMWQAEGKAYGELISEIIE 335


>gi|238063267|ref|ZP_04607976.1| D-alanine-D-alanine ligase [Micromonospora sp. ATCC 39149]
 gi|237885078|gb|EEP73906.1| D-alanine-D-alanine ligase [Micromonospora sp. ATCC 39149]
          Length = 365

 Score =  141 bits (355), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 89/255 (34%), Positives = 141/255 (55%), Gaps = 14/255 (5%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-S 110
           D+ F VLHG +GEDG +Q +LE+  IPY  + + ASA +MDK  +K++ +  G+PV P +
Sbjct: 107 DVVFPVLHGAYGEDGTIQGMLEMAGIPYVGANVFASAAAMDKEFTKKLCAVEGIPVGPYA 166

Query: 111 ILVNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168
           +L N  T+  + +  +  P  +KP + GSS GI   K D  + L+   +++     ++L+
Sbjct: 167 VLRNGVTLSEEDKRRLGLPVFVKPSRAGSSFGI--TKVDDWVDLEAAVAAAREIDPKVLV 224

Query: 169 EQYVDGIELTCGVM-------GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL 221
           E  + G E+ CGV+        +AS+ V   A    D+Y +E KY S    + LPA +P 
Sbjct: 225 EAAIVGREIECGVLEGEAGGGAEASVLVEVRAGGDHDWYDFEAKYLS-EPEYDLPATLPE 283

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYA 281
            + ++VQ  A  A  A+ C G++R DF   P    V+  EIN  PG TP S+FP M A +
Sbjct: 284 HVTRQVQEYAVRAFAALDCAGLARVDFFVTP-DLDVYLNEINTMPGFTPTSMFPLMWAAS 342

Query: 282 GYSFRELLLWMVEDA 296
           G  + +L+  ++  A
Sbjct: 343 GLEYPKLVNRLIRTA 357


>gi|88704102|ref|ZP_01101817.1| D-alanine--D-alanine ligase [Congregibacter litoralis KT71]
 gi|88701929|gb|EAQ99033.1| D-alanine--D-alanine ligase [Congregibacter litoralis KT71]
          Length = 315

 Score =  141 bits (355), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 100/287 (34%), Positives = 149/287 (51%), Gaps = 10/287 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S ER+VSL+S     + L D G++   +D              D+AFN+ HG
Sbjct: 12  IAVLFGGTSGERKVSLASADTVLTTLRDGGYEPLALDTGEPRWWERLE-DADIAFNIQHG 70

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG+ Q +L  + +  T S +L SAL+MDK+RSKQ+  S G+P     +V+  T D+
Sbjct: 71  VGGEDGVTQGLLASMGVVGTGSDVLGSALAMDKLRSKQLWRSLGLPTANFAMVDAHT-DA 129

Query: 121 QHLISP--PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
             L+S      IKP   GSSLG+  +  D          ++  +G+ +L E+++DG E T
Sbjct: 130 AALLSEWGAAFIKPSAEGSSLGMSRV--DSVDGFKAACEAAAVYGEGILAEEFIDGPEYT 187

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             ++GD +L    I   + +FY YE KY   ++ + +P  +     + + RLA  A  A+
Sbjct: 188 VAILGDRALPPIRIEASR-EFYDYEAKYKGNSTRYHIPCGLSDGEEETLCRLALEAFAAL 246

Query: 239 GCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYS 284
           GC    R D + +   R  F  LE+N  PGMT  S+ P  A  AG S
Sbjct: 247 GCSIWGRVDLMRN--RRGEFQLLEVNTVPGMTDHSLVPMAAKAAGMS 291


>gi|315605519|ref|ZP_07880556.1| D-alanine-D-alanine ligase [Actinomyces sp. oral taxon 180 str.
           F0310]
 gi|315312786|gb|EFU60866.1| D-alanine-D-alanine ligase [Actinomyces sp. oral taxon 180 str.
           F0310]
          Length = 335

 Score =  141 bits (355), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 89/301 (29%), Positives = 164/301 (54%), Gaps = 19/301 (6%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62
           ++ GG++ ER+VS+ SG+  A+ L   G++V + DVD S+   +   +PD+ + ++HG+ 
Sbjct: 7   IIAGGLTHERDVSVRSGRRVANILAQFGYEVMRSDVDASLTESIQTFEPDVVWPLVHGSI 66

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP-----VCPSILVNRFT 117
           GEDG +Q+ LE + +P+  S  + + L+ +K  +K ++ S GV        P  +  +  
Sbjct: 67  GEDGSLQSFLESVGVPFVGSSSVQAMLASNKPIAKALLGSAGVATPGWVTLPQAIFRQLG 126

Query: 118 MDS-----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
             +     +  +S P VIKP  GGS+LGI        +   ++   ++ +G +L++EQ +
Sbjct: 127 ASNVLAALEGSVSFPVVIKPTDGGSALGISTAHNADQLRRAMVD--AFAYGQRLMVEQRI 184

Query: 173 DGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           DG ++   V+    G  +L   EI+      Y Y+ +Y++  + + +PA+   +I  ++Q
Sbjct: 185 DGRDVAVSVVDLWDGPVALPPVEIST-DGGRYDYDARYTTDETEYFVPARFSDEILADLQ 243

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA-AYAGYSFRE 287
             A  AH  +G R +SR DF+ D  +   ++++ NV PGMT  S+ P+ A A+   SF +
Sbjct: 244 AAAVEAHTTLGLRDLSRIDFVVDD-AGTCWFIDANVTPGMTDTSLLPQAADAFDDSSFAQ 302

Query: 288 L 288
           L
Sbjct: 303 L 303


>gi|253575141|ref|ZP_04852480.1| D-alanine-D-alanine ligase [Paenibacillus sp. oral taxon 786 str.
           D14]
 gi|251845597|gb|EES73606.1| D-alanine-D-alanine ligase [Paenibacillus sp. oral taxon 786 str.
           D14]
          Length = 311

 Score =  141 bits (355), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 102/302 (33%), Positives = 159/302 (52%), Gaps = 14/302 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGG+SSEREVSL +GK     L+   ++V  I++ +   L+      D A   LHG
Sbjct: 3   VGVIMGGVSSEREVSLMTGKEIVGKLDPNKYEVVPIELTKREELIDRVRGIDFALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG VQ +LE + IPY+ SG+L+S+L MDK  +K+++ + G+       + R  M +
Sbjct: 63  AFGEDGTVQGVLETMGIPYSGSGVLSSSLCMDKNLTKRLLQTEGIATPDGAYLER-AMFA 121

Query: 121 QHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
                P       P  +KP  GGSS+G+  + + + +   L ++  W  G+ +L+E  V 
Sbjct: 122 DGTWEPKMAGLAYPLFVKPNAGGSSIGVQRVDRPELLRGALEEAFRW--GESVLVESMVS 179

Query: 174 GIELTCGVMGDASLDVTEI-AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
           G E+TC ++    L V  I A   ++++ YE KYS        P  +P D    V+  A 
Sbjct: 180 GQEITCPILDGELLPVLGIRAANGAEWFDYEAKYSD-GGAEEKPITLPPDEETRVRAAAL 238

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
             ++ + CR  +R D +        + LE+N  PGMT  S+ P  AA AG S+ ELL  +
Sbjct: 239 ACYRLLQCRVYARVDMILK--DGVPYVLEVNTLPGMTANSLLPRSAAAAGISYSELLDRI 296

Query: 293 VE 294
           +E
Sbjct: 297 IE 298


>gi|300775213|ref|ZP_07085075.1| D-alanine--D-alanine ligase [Chryseobacterium gleum ATCC 35910]
 gi|300505953|gb|EFK37089.1| D-alanine--D-alanine ligase [Chryseobacterium gleum ATCC 35910]
          Length = 329

 Score =  141 bits (355), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 106/328 (32%), Positives = 175/328 (53%), Gaps = 41/328 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40
           +AV+MGG S E  VSL SG+    +L+   + V ++ V                    D 
Sbjct: 8   VAVVMGGYSDEYVVSLKSGQLIYDSLDRNLYDVYKVVVLKDEWYFLGENDKKYAINRGDF 67

Query: 41  SVGLVLAH-LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
           SV L     L+ D+ FN++HG  GE+G++QA  + +   YT  G   SAL+ +K  +  V
Sbjct: 68  SVTLDNGETLQFDVCFNIIHGTPGENGILQAYWDAIGQKYTGCGFYQSALTFNKKDTLAV 127

Query: 100 VSSCGVPVCPSILVNRFT-MDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
           +S  G+P   SI + +   ++   ++S    P  +KP + GSSLGI  +K+      +L+
Sbjct: 128 LSKYGIPSAKSIYLRKGEDINVDEIVSELKLPLFVKPNQSGSSLGISKVKEKS----ELI 183

Query: 156 QSS--SWNHGDQLLIEQYVDGIELTCGVM---GDA-SLDVTEIAVPKSDFYSYELKYSSL 209
            ++  ++   D++LIE +++G+E++ GV+   G+   L +TEI VP ++F+ YE KY   
Sbjct: 184 AATEIAFKEDDEILIESFLNGMEVSVGVIDFKGETIVLGITEI-VPTNEFFDYEAKYEGA 242

Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF-LFDPLSRKVFWLEINVQPGM 268
            S  + PA+I  +  K V+ +A  A+ ++G  G SRS++ L D +    + LE+N  PG 
Sbjct: 243 -SEEITPARIDEETTKRVEEIAKRAYNSLGMSGFSRSEYILMDGIP---YMLEMNTNPGF 298

Query: 269 TPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +P SI P+ A + G S  +L    VE A
Sbjct: 299 SPASILPQQAKHYGISIMDLCGNEVEKA 326


>gi|294791342|ref|ZP_06756499.1| D-alanine--D-alanine ligase [Scardovia inopinata F0304]
 gi|294457813|gb|EFG26167.1| D-alanine--D-alanine ligase [Scardovia inopinata F0304]
          Length = 385

 Score =  141 bits (355), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 90/282 (31%), Positives = 149/282 (52%), Gaps = 34/282 (12%)

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV 105
           L H+  D  F VLHG +GEDG +Q +LE++ IPY   G+ ASA  MDK  +K ++S  G+
Sbjct: 105 LGHI--DAVFPVLHGPYGEDGTIQGLLEMMGIPYVGCGVFASAACMDKHYTKVLLSQAGI 162

Query: 106 PVCPSILVN--------RFTMDSQHLISP--------PYVIKPLKGGSSLGIIVI--KKD 147
            V P I ++         F  D + L+          P  +KP + GSS G+  +   +D
Sbjct: 163 QVAPGITLDTRSYHRDSHFVADGESLLQAVDRAGLQYPLFVKPSRAGSSFGVTKVDFSQD 222

Query: 148 QSIPLDLLQSSSW---NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP--------- 195
           +S+ ++ L ++ +   NH  ++LIEQ +DG E+ C V+      + E ++P         
Sbjct: 223 KSLLMNRLSAAVFEAANHDWRVLIEQGIDGREIECAVLAARPGSLPETSLPGEVVLDAPD 282

Query: 196 KSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
              FY ++ KY    ++HV +PA +P  + ++V++ A  A  A+  +G+SR D  F    
Sbjct: 283 DDTFYDFDSKYMDSQASHVEVPAHLPQKLLEKVRQTAGQAFLAVDGQGLSRVD-TFVTAD 341

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            +V   EIN  PG TP+S++ +     G S+REL+  +++ A
Sbjct: 342 GQVLVNEINTMPGFTPISMYAKAWEAMGLSYRELISRLIDGA 383


>gi|218437113|ref|YP_002375442.1| D-alanyl-alanine synthetase A [Cyanothece sp. PCC 7424]
 gi|226729270|sp|B7K991|DDL_CYAP7 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|218169841|gb|ACK68574.1| D-alanine/D-alanine ligase [Cyanothece sp. PCC 7424]
          Length = 352

 Score =  141 bits (355), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 104/343 (30%), Positives = 170/343 (49%), Gaps = 53/343 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV----DRSVGL---------VLA 47
           + +L GG S E EVS++S KA A+AL  A    ++ D+     R  G          VL 
Sbjct: 6   VGLLFGGRSGEHEVSINSAKAIATAL-SASENATKYDILPVYIRKDGCWQAPDVAQQVLE 64

Query: 48  HLKP---------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
             +P                     D+ F +LHG  GEDG +Q +L L+++PY  SG+L 
Sbjct: 65  SAQPLSTPTDKSPQLWQFPPQVNQVDVWFPILHGPNGEDGTLQGLLTLMQVPYVGSGVLG 124

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP------------PYVIKPLK 134
           SA+ MDK+  K V +  G+P    + ++R  + S   I P            P  +KP  
Sbjct: 125 SAVGMDKITMKTVFAKAGLPQVKYMTLSRGQIWSNPCIFPKLCDEIEETLNYPCFVKPAN 184

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD---VTE 191
            GSS+GI  ++    +   L Q++S++   ++++E  V   E+ C V+G+ +     V E
Sbjct: 185 LGSSVGIAKVRSRSELEKALDQAASYDR--RIIVEAGVIAREVECAVLGNDNPKASVVGE 242

Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
           I    SDFY YE KY+   +  ++PA +P  I  ++Q ++  A  A+   G++R DF + 
Sbjct: 243 ITF-NSDFYDYETKYTDGRAQLLIPASVPDSIMTQIQEMSLAAFAAVDAAGLARVDFFYV 301

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             + ++   EIN  PG T  S++P++ A  G SF +L+  ++E
Sbjct: 302 EKTGEILINEINTLPGFTAFSMYPQLWAATGISFPQLVDRLIE 344


>gi|302339386|ref|YP_003804592.1| D-alanine/D-alanine ligase [Spirochaeta smaragdinae DSM 11293]
 gi|301636571|gb|ADK81998.1| D-alanine/D-alanine ligase [Spirochaeta smaragdinae DSM 11293]
          Length = 363

 Score =  140 bits (354), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 102/344 (29%), Positives = 164/344 (47%), Gaps = 53/344 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS------------------- 41
           +A+L GG S E EVSL S  +    ++   F V+ I VD+                    
Sbjct: 6   VALLFGGKSGEHEVSLVSAASVFKHIDKERFDVALIAVDKDGAWFLQPQPLYDEKEGGFV 65

Query: 42  -------------VGLVLAHLKP---DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
                         G +    KP   +L F VLHG FGEDG VQ +LEL ++PY  +G+L
Sbjct: 66  VERKEENRVYAVPAGGLRTMAKPLDIELVFPVLHGTFGEDGTVQGLLELCDLPYAGAGVL 125

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH-----------LISPPYVIKPLK 134
            S+L MDK   K++    G+PV P   +   +                  S P  +KP +
Sbjct: 126 GSSLCMDKAAVKRIWIQAGLPVVPFEELREVSWKRSKGAAASVRRAVDRFSFPLFVKPSR 185

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV---TE 191
            GSS+G+   + ++ +   +  + S++  D+LLIE  V   E+ C V+G+  L      E
Sbjct: 186 AGSSVGVSRCETEEGLYAAIEDAFSFD--DKLLIEPAVQAKEIECSVIGNQELTTFAPGE 243

Query: 192 IAVPKSDFYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
           I VP  DFY Y+ KY   +  ++L P+ +  +  K V++++  A++     G +R D  +
Sbjct: 244 I-VPSHDFYDYDAKYIDPDGANLLIPSSLNEEQQKMVRQISARAYRVAEAEGFARVDCFY 302

Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           +  + KV   EIN  PG T +S+FP++    G ++ ELL  +++
Sbjct: 303 EEATGKVLLNEINTIPGFTKISMFPKLCENGGVAYGELLTKLLD 346


>gi|282861341|ref|ZP_06270406.1| D-alanine/D-alanine ligase [Streptomyces sp. ACTE]
 gi|282563999|gb|EFB69536.1| D-alanine/D-alanine ligase [Streptomyces sp. ACTE]
          Length = 401

 Score =  140 bits (354), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 112/363 (30%), Positives = 165/363 (45%), Gaps = 71/363 (19%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI------------------------ 36
           +AV+ GG SSE  +S+ +  A  SAL+   + V  I                        
Sbjct: 35  VAVVFGGRSSEHGISVVTAGAVMSALDRTKYDVLPIGITRDGRWALTADDPARMAISDRQ 94

Query: 37  --DVDR----SVGLVLAHLKP--------------------DLAFNVLHGNFGEDGLVQA 70
             DVDR    + G V   + P                    D+ F +LHG +GEDG +Q 
Sbjct: 95  VPDVDRLAQSAEGAVTLSVDPGNRDVVVGEPGAVPTVLGEVDVVFPMLHGPYGEDGTLQG 154

Query: 71  ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP---- 126
            LEL  +PY  +G+LASA+  DK   K+V +S G+PV P  +V     +S    +     
Sbjct: 155 FLELSGVPYVGAGVLASAVGQDKEYMKRVFTSFGLPVGPYEVVRPREWESDRPAARKRIM 214

Query: 127 --------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                   P  +KP +GGSS+GI   K D    LD     +  H  + L+E  + G E+ 
Sbjct: 215 EFAAEHGWPLFVKPARGGSSMGI--TKVDDPSGLDEAIEEARRHDPKFLVESLLRGREIE 272

Query: 179 CGVM-----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           CGV+       AS+      V   DFY +E KY   ++  ++PA +  +   EV+RLA  
Sbjct: 273 CGVLEFEDGPRASVPAEIPPVTAHDFYDFEAKYID-SAAGLVPAPLTEEQTAEVRRLAVD 331

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           A +A  C G+ R+DF        V   EIN  PG TP+S++P M   +G S+ EL+  ++
Sbjct: 332 AFEAASCEGLVRADFFLTEDGTFVI-NEINTMPGFTPISMYPRMWQESGVSYPELVDRLI 390

Query: 294 EDA 296
           + A
Sbjct: 391 QAA 393


>gi|145597093|ref|YP_001161390.1| D-alanine--D-alanine ligase [Salinispora tropica CNB-440]
 gi|145306430|gb|ABP57012.1| D-alanine--D-alanine ligase [Salinispora tropica CNB-440]
          Length = 326

 Score =  140 bits (354), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 96/313 (30%), Positives = 157/313 (50%), Gaps = 24/313 (7%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62
           VL GG+S ER+VSL SG+    AL   G +    D D ++   L    PD     LHG  
Sbjct: 18  VLAGGLSYERDVSLRSGRRVLDALRAVGVEAELRDADVALLPALVADPPDAVVIALHGAT 77

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFT--- 117
           GEDG ++ +L+L ++PY      AS  + DK  +K V+    +P    + +  +RF+   
Sbjct: 78  GEDGSLRGVLDLCDVPYVGCDARASRRAWDKPSAKTVLREAHIPTPDWVALPHDRFSELG 137

Query: 118 --------MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
                   +D   L   P ++KP +GGS LG  V++   ++P  ++   +++     L+E
Sbjct: 138 AVAVLDRIVDRLGL---PLMVKPAQGGSGLGAAVVRDSAALPAAMVGCFAYDS--TALVE 192

Query: 170 QYVDGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
           +Y+ G ++   V+    G  +L   EI VP++  Y Y  +Y++  +T   PA++  ++ +
Sbjct: 193 RYLSGTDVAVSVIDLGEGPQALPAVEI-VPRNGVYDYAARYTAGRTTWHTPARLTSEVAE 251

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285
            V  LA  AH A+G R +SR D + D    +   L +NV PGMT  S+ P  A  AG  F
Sbjct: 252 AVAGLAVAAHTALGLRDLSRVDLIVD-ADGQPHVLGVNVAPGMTETSLLPLAAQAAGLDF 310

Query: 286 RELLLWMVEDASC 298
             ++  +V  A+ 
Sbjct: 311 GRMIGTLVSQAAA 323


>gi|146300373|ref|YP_001194964.1| D-alanyl-alanine synthetase A [Flavobacterium johnsoniae UW101]
 gi|190359130|sp|A5FGN3|DDL_FLAJ1 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|146154791|gb|ABQ05645.1| D-alanine--D-alanine ligase [Flavobacterium johnsoniae UW101]
          Length = 323

 Score =  140 bits (354), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 97/322 (30%), Positives = 164/322 (50%), Gaps = 34/322 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDA---GFKV--------------SQIDVDR--- 40
           +A++MGG SSE ++SL SG      L+     GF++              ++  +DR   
Sbjct: 4   IAIIMGGYSSEYKISLISGNVVYQYLDKTKYNGFRIHIFKEKWVYVDANDAEFPIDRNDF 63

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           SV +    +  D  FN +HG  GEDGL+QA  EL+ +P +      SAL+ +K     V+
Sbjct: 64  SVTVNGEKITFDCVFNAIHGTPGEDGLMQAYFELIGLPQSSCDYYQSALTFNKRDLLSVL 123

Query: 101 SSCGVPVCPSILVNR----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
              G+    S  +N+     T +    +  P  +KP K GSS GI  +K +  +P+ +  
Sbjct: 124 KPYGIKTAISYYLNKGDEINTAEIVKKVGLPCFVKPNKAGSSFGISKVKSEAELPIAI-- 181

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDAS----LDVTEIAVPKSDFYSYELKYSSLNST 212
             ++   ++++IE ++DG E++ GV+        L +TEI V  +DF+ YE KY    S 
Sbjct: 182 EVAYKEDNEIIIESFLDGTEVSVGVINYKGEIKVLPITEI-VSDNDFFDYEAKYEG-KSQ 239

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
            + PA+I  ++ ++V   A  A++ +  +G SRS+F+   +  + + LE+N  PG+T  S
Sbjct: 240 EITPARISDELTQKVGETAKRAYEVLKMKGFSRSEFII--VDNEPYMLEMNTIPGLTTES 297

Query: 273 IFPEMAAYAGYSFRELLLWMVE 294
           + P+ A  AG S  +L    +E
Sbjct: 298 LIPQQAKAAGISLEDLFTNAIE 319


>gi|312871251|ref|ZP_07731349.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus iners
           LEAF 3008A-a]
 gi|311093265|gb|EFQ51611.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus iners
           LEAF 3008A-a]
          Length = 361

 Score =  140 bits (354), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 103/343 (30%), Positives = 172/343 (50%), Gaps = 50/343 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALE------------DAGFKVS-------------Q 35
           + ++ GG SSE EVS+ SG+    A++            + GF  S             Q
Sbjct: 7   VGLIFGGNSSEYEVSIISGRNIYKAIDKEKYDVYPMWITNTGFLASDADSRKVLEDPTYQ 66

Query: 36  IDVDRSV----GLVLAHLKP--DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
           I+  R+V     ++    +P  D+ F ++HGN GEDG +Q +L +L+ P+    +LA+A+
Sbjct: 67  IENPRTVTNISNVIELSNRPEIDVFFPIVHGNLGEDGCLQGLLRILDKPFVGDDVLAAAI 126

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--QHLISPPYV---------IKPLKGGSS 138
           +MDK  +K +    GVPV   I + RF  D+     +S  YV         +KP   GSS
Sbjct: 127 TMDKELNKIMAQRAGVPVAKWISIKRFEYDNAKNEKLSYDYVSQQLGTDLFVKPSNQGSS 186

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVP 195
           +GI  +         L +  ++ + D++L+E+ + G E+   V+G+    V+   +I   
Sbjct: 187 VGISHVTSAADYEKALAE--AFKYDDKVLVEETIKGTEVETAVLGNDDAIVSGVGQITNA 244

Query: 196 KSDFYSYELKYSSLNSTHVL--PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
           +  +YSYE KY+  NST  L  PA +P +I K V+  A   + A  C G++R D +    
Sbjct: 245 QGSWYSYENKYND-NSTSKLQIPADLPAEIVKTVRSQALKVYHATECSGLARVDSMLTTD 303

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             KV + E+N  PG T +S++P++   AG  + EL+  +++ A
Sbjct: 304 GHKVIFNELNALPGFTNISMYPKLFEEAGIPYAELITKLLDYA 346


>gi|153816394|ref|ZP_01969062.1| hypothetical protein RUMTOR_02646 [Ruminococcus torques ATCC 27756]
 gi|317500748|ref|ZP_07958965.1| D-alanine-D-alanine ligase [Lachnospiraceae bacterium 8_1_57FAA]
 gi|331089774|ref|ZP_08338668.1| hypothetical protein HMPREF1025_02251 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|145846282|gb|EDK23200.1| hypothetical protein RUMTOR_02646 [Ruminococcus torques ATCC 27756]
 gi|316897841|gb|EFV19895.1| D-alanine-D-alanine ligase [Lachnospiraceae bacterium 8_1_57FAA]
 gi|330403657|gb|EGG83212.1| hypothetical protein HMPREF1025_02251 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 350

 Score =  140 bits (354), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 102/343 (29%), Positives = 160/343 (46%), Gaps = 55/343 (16%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK------------ 50
           VL GG+S+ER+VSL+S       L + G     +DV   +     HL+            
Sbjct: 5   VLAGGLSTERDVSLASAAGICRTLIEKGHDAFLLDVFLGLEHAPEHLEDVFTLPGHGLEI 64

Query: 51  --------PDLA----------------------------FNVLHGNFGEDGLVQAILEL 74
                   PDLA                            F  LHG  GE+G +QA  +L
Sbjct: 65  AKNISCEEPDLAAVKASRPDQSDCFLGPNVIELCRLADITFLGLHGGEGENGKLQATFDL 124

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---ISPPYVIK 131
           L I YT    L  A++MDK  +KQV    G+     + +++ + D       +S P VIK
Sbjct: 125 LGIRYTGPDSLGCAVAMDKGLTKQVFLQAGIDTPAGVTIHKKSKDRSLALTGLSLPVVIK 184

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P  GGSS+G+ ++  ++     L    S+ + D++++E+Y+ G E  CGV+ + +L   E
Sbjct: 185 PCSGGSSIGVYIVSTEEEYAEAL--EKSFFYEDEVVVEEYIKGREFACGVIDNEALPPIE 242

Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
           I +PK+ F+ Y  KY +  +  V PA IP +    +  L   A +A+     SR+DFL D
Sbjct: 243 I-IPKTGFFDYANKYQADATLEVCPADIPEETASRMMELTVKAFRALKLNVYSRADFLLD 301

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
                ++ LE+N  PGMT  S+ P+ A  AG  + +L   +++
Sbjct: 302 E-KGNLYCLEMNTLPGMTAASLLPKEAKAAGIEYGDLCELIIK 343


>gi|238752552|ref|ZP_04614026.1| D-alanine--D-alanine ligase [Yersinia rohdei ATCC 43380]
 gi|238709227|gb|EEQ01471.1| D-alanine--D-alanine ligase [Yersinia rohdei ATCC 43380]
          Length = 366

 Score =  140 bits (354), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 102/348 (29%), Positives = 161/348 (46%), Gaps = 59/348 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD--------------------- 39
           + V+ GG S+E EVSL S K    A++   F V  + +D                     
Sbjct: 6   VGVIFGGKSAEHEVSLQSAKNIVEAIDTDKFDVMLLGIDKQGKWHVNDASSYLLNAENPA 65

Query: 40  --------RSVGL----------------VLAHLKPDLAFNVLHGNFGEDGLVQAILELL 75
                   R+V L                VLA L  D+ F ++HG  GEDG +Q +L + 
Sbjct: 66  LISLNHSNRNVALIPGQENQQLIAADNAAVLAQL--DVIFPIVHGTLGEDGSLQGLLRMA 123

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYV 129
            IP+  SG+L SA+SMDK  +K+++   G+ + P I + R   D+         +  P  
Sbjct: 124 NIPFVGSGVLGSAVSMDKDITKRLLRDAGLNIAPFITLTRSNKDNYSFEQVTEKLGLPLF 183

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS--L 187
           IKP   GSS+G+  ++        +  +  ++H  ++L+E  + G E+ C VMG+ S   
Sbjct: 184 IKPANQGSSVGVSKVRNAAEYQQAVALAFDFDH--KVLVESAIVGREIECAVMGNDSPQA 241

Query: 188 DVTEIAVPKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRS 246
            V    V   +FYSY+ KY + +   V +PA I  D    ++ +A  A  A+ CRG++R 
Sbjct: 242 SVCGEVVISDEFYSYDTKYINESGAQVIIPAAIDTDASDRIRAVALAAFSALECRGMARV 301

Query: 247 DFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           D    P    V   EIN  PG T +S++P++    G    EL+  ++E
Sbjct: 302 DVFLTP-DNTVIINEINTLPGFTNISMYPKLWRATGIGSTELITTLIE 348


>gi|198242528|ref|YP_002214082.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|197937044|gb|ACH74377.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|326621826|gb|EGE28171.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica
           serovar Dublin str. 3246]
          Length = 285

 Score =  140 bits (354), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 97/303 (32%), Positives = 151/303 (49%), Gaps = 34/303 (11%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+ER+VSL+SG A  + L + G     +D        L  +     F  LHG
Sbjct: 5   IAVLLGGTSAERDVSLNSGAAVLAGLREGGIDAHPVDPQEVDVAQLKAMGFQKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR----- 115
                                 G++ASALSMDK+RSK +    G+PV P + + R     
Sbjct: 65  R---------------------GVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 103

Query: 116 -FTMDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
             + + +  IS    P ++KP + GSS+G+  + ++ ++   L  S ++ H D++LIE++
Sbjct: 104 GLSEEQKARISALGLPLIVKPSREGSSVGMTKVVEENALQGAL--SLAFQHDDEILIEKW 161

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L    I  P   FY YE KY S  + +  PA +       +Q L 
Sbjct: 162 LCGPEFTVAIVGEEILPSIRIQ-PAGTFYDYEAKYLSDETQYFCPAGLDASQEAALQSLV 220

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A +A+GC G  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 221 LQAWKALGCTGWGRIDVMLDS-DGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 279

Query: 292 MVE 294
           ++E
Sbjct: 280 ILE 282


>gi|319937766|ref|ZP_08012169.1| D-alanine-D-alanine ligase B [Coprobacillus sp. 29_1]
 gi|319807201|gb|EFW03815.1| D-alanine-D-alanine ligase B [Coprobacillus sp. 29_1]
          Length = 345

 Score =  140 bits (354), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 80/265 (30%), Positives = 144/265 (54%), Gaps = 22/265 (8%)

Query: 50  KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109
           + ++ + VLHG +GEDG +Q +LEL E+PY    +L S+++MDK+ +K+++ + G+P   
Sbjct: 78  QQEVVYPVLHGMYGEDGTIQGLLELAEVPYVGCKVLGSSVAMDKIYTKKILETVGIPQVK 137

Query: 110 SILVNRF----------TMDSQHLISP--------PYVIKPLKGGSSLGIIVIKKDQSIP 151
           S+ V +           T D    I+         P  IK    GSS+G   + +++ + 
Sbjct: 138 SLYVKKRYDGTLVVVDNTFDESADIADSVEKELRYPCFIKASNSGSSVGCYRVDEEKELM 197

Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA--VPKSDFYSYELKYSSL 209
             L +++ ++   +++IE+ VD IEL   V+G+    V+ +   +P   FY++E KY   
Sbjct: 198 PRLEEAAQYDR--KIVIEECVDCIELETAVLGNDDPIVSRVGQIMPHGVFYTFESKYEDE 255

Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
            S   +PA +   I +E++  A    +AI   G+SR DF  D  + KV+  EIN  PG T
Sbjct: 256 ESKTCIPALVDEKIQEEIRNYALKVFKAIDGHGLSRVDFFLDKKTNKVYLNEINTMPGFT 315

Query: 270 PVSIFPEMAAYAGYSFRELLLWMVE 294
            +S++P++ A  G ++ +L+  ++E
Sbjct: 316 KISMYPQLMADFGITYSDLIDKLIE 340


>gi|229491375|ref|ZP_04385199.1| D-alanine--D-alanine ligase [Rhodococcus erythropolis SK121]
 gi|229321660|gb|EEN87457.1| D-alanine--D-alanine ligase [Rhodococcus erythropolis SK121]
          Length = 368

 Score =  140 bits (354), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 90/268 (33%), Positives = 145/268 (54%), Gaps = 20/268 (7%)

Query: 43  GLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS 102
           G VLA +  D+ F VLHG +GEDG +Q +LEL  +PY   G+LASA  MDK  +K+++++
Sbjct: 99  GAVLASV--DVVFPVLHGAYGEDGTIQGLLELAGVPYVGPGVLASAAGMDKEFTKKLLAA 156

Query: 103 CGVPVCPSILVN----RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS 158
            G+PV   +++       T + +  +  P  +KP +GGSS+GI  +       LD   + 
Sbjct: 157 EGLPVGVQVVLRPGTATLTEEQKAELGLPVFVKPARGGSSIGITRVSNWDG--LDGAIAH 214

Query: 159 SWNHGDQLLIEQYVDGIELTCGVM----GDASLD-VTEIAVPKSD-----FYSYELKYSS 208
           +  H  ++++E  + G E+ CGV+    GD     V EI +P SD     FY ++ KY  
Sbjct: 215 ARLHDPKVIVEGAIIGREVECGVLEFPNGDVKASVVAEIRMPDSDADSDAFYDFDTKYLD 274

Query: 209 LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268
                 +PAK+   +  +++ LA  A +A+ C+G+SR DF     +      EIN  PG 
Sbjct: 275 DVCEFDIPAKLDESVSDQIRELAVRAFKALDCQGLSRVDFFV--TADGPVINEINTMPGF 332

Query: 269 TPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           T +S++P+M    G  +R L+  +V+ A
Sbjct: 333 TSISMYPKMWNATGIDYRTLISTLVDTA 360


>gi|319440504|ref|ZP_07989660.1| D-alanyl-alanine synthetase A [Corynebacterium variabile DSM 44702]
          Length = 365

 Score =  140 bits (354), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 82/249 (32%), Positives = 134/249 (53%), Gaps = 15/249 (6%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+ F VLHG  GEDG VQ +LEL  +PY  +G+LASA  MDK  +K +  + GVPV   +
Sbjct: 110 DVIFPVLHGRNGEDGTVQGVLELSNVPYVGNGVLASAACMDKQYTKLIARAAGVPVGDEV 169

Query: 112 LVNR---FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168
           ++      T + + +I  P  +KP +GGSS+GI   K      LD  ++ ++ H  ++L+
Sbjct: 170 VLTERRDLTDEEKEMIGLPVFVKPARGGSSVGI--SKVSDWADLDAAEAHAFEHDTKILV 227

Query: 169 EQYVDGIELTCGVMG--DASLDVTEIAVPKSD------FYSYELKYSSLNSTHVLPAKIP 220
           E  + G+E+ CGV+   D ++  ++ ++ +        FY ++ KY     ++ +PA +P
Sbjct: 228 EAMLHGVEVECGVLQYPDGTVHASQPSLLEGTEDGPEGFYGFDTKYLDDIISYEIPAPLP 287

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280
                 V+R A    +A+ C G++R DF            E N  PG TP+S++P+M   
Sbjct: 288 EGQADAVRRWAVETFRALDCEGLARVDFFV--TEDGPVLNEPNTMPGFTPISMYPKMFEA 345

Query: 281 AGYSFRELL 289
            G ++ ELL
Sbjct: 346 TGVAYTELL 354


>gi|304383943|ref|ZP_07366400.1| D-alanine-D-alanine ligase [Prevotella marshii DSM 16973]
 gi|304335021|gb|EFM01294.1| D-alanine-D-alanine ligase [Prevotella marshii DSM 16973]
          Length = 333

 Score =  140 bits (354), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 99/329 (30%), Positives = 159/329 (48%), Gaps = 39/329 (11%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---DRSVGLVLAHLKP------ 51
           +A++ GG SSE +VSL S +   S  +   + V  +D+   D  V L    + P      
Sbjct: 8   IAIVCGGDSSEHDVSLRSAQGLYSFFDKERYNVYIVDIKGQDWRVNLPNGDVAPIDRNDF 67

Query: 52  -----------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
                      D A+  +HG  GE+GL+Q   ELL IPY+ SG+L  AL+ +K    Q +
Sbjct: 68  SFMENGKFMLFDYAYITIHGTPGENGLLQGYFELLHIPYSTSGVLVEALTFNKFVLNQYL 127

Query: 101 SSCGVPVCPSILVNRFTMDS------QHLISPPYVIKPLKGGSSLGIIVIKK-DQSIPLD 153
              GV V  SILV R   D       +  I  P+ +KP   GSS G+  +K  DQ  P  
Sbjct: 128 RGYGVSVAESILVRRGFEDQIDEKTIEEKIGLPFFVKPAADGSSFGVSKVKNIDQLAP-- 185

Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS----LDVTEIAVPKSDFYSYELKYSSL 209
               +++   D+++IE Y+ G E++ G          L  TE+ V  ++F+ Y+ KY+  
Sbjct: 186 -ALRNAFMESDEVMIESYLKGTEISIGCYKTREKSVVLPATEV-VTSNEFFDYDAKYNG- 242

Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF---DPLSRKVFWLEINVQP 266
               + PA++  +  + V+++    +  + C GI R D++    +  + K+  LE+N  P
Sbjct: 243 QVQEITPARLSEETAERVKQITHAIYDILHCNGIIRIDYIITKNEDGTEKINMLEVNTTP 302

Query: 267 GMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           GMT  S  P+    AG +  E+L  +VE+
Sbjct: 303 GMTATSFIPQQIRAAGLNITEVLTEIVEN 331


>gi|325915873|ref|ZP_08178170.1| D-alanine--D-alanine ligase [Xanthomonas vesicatoria ATCC 35937]
 gi|325537916|gb|EGD09615.1| D-alanine--D-alanine ligase [Xanthomonas vesicatoria ATCC 35937]
          Length = 286

 Score =  140 bits (354), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 85/256 (33%), Positives = 143/256 (55%), Gaps = 20/256 (7%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+ F ++HG  GEDG +Q +L +  +P+  SG+L SA++MDK  +K+V+   G+ V P +
Sbjct: 18  DVVFPIVHGTLGEDGSLQGLLRMTNLPFVGSGVLGSAVAMDKDMAKRVLRDAGLAVAPFV 77

Query: 112 LVNRFT---MDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
             NR T    D   LI+    P  +KP   GSS+G+  +    +    L  + S++H  +
Sbjct: 78  CFNRRTAAQADVAALIAQLGLPLFVKPANQGSSVGVSQVHSADAFAAALALALSYDH--K 135

Query: 166 LLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD 222
           +L+E  + G E+ C V+G+A+   +   E+ V  + FYSYE KY S +   ++   IP D
Sbjct: 136 VLVEAAIVGREIECAVLGNATPQASVCGEVVVHDA-FYSYETKYISAHGADIV---IPAD 191

Query: 223 IY----KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278
           IY    + +Q++A  A+QA+ C G++R D       R V   E+N  PG T +S++P++ 
Sbjct: 192 IYAHTQQRIQQIAVQAYQALDCAGMARVDVFLCADGRIVIN-EVNTLPGFTRISMYPKLW 250

Query: 279 AYAGYSFRELLLWMVE 294
             +G  +R L+  ++E
Sbjct: 251 QASGLDYRSLITQLIE 266


>gi|212691723|ref|ZP_03299851.1| hypothetical protein BACDOR_01218 [Bacteroides dorei DSM 17855]
 gi|212665728|gb|EEB26300.1| hypothetical protein BACDOR_01218 [Bacteroides dorei DSM 17855]
          Length = 324

 Score =  140 bits (354), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 92/323 (28%), Positives = 164/323 (50%), Gaps = 33/323 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKV-----------------SQIDVDRSVG 43
           +A++ GG SSE  VSL S +   S ++   + +                 S+  +DR+  
Sbjct: 5   IAIVAGGDSSELVVSLRSAQGLYSFIDKERYNLYIVEMEGHRWEVVLPDGSKTPIDRNDF 64

Query: 44  LVLAHLKP---DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
             + + +    D A+  +HG  GE+G++Q   +LL IPY+   +L SA++ +K    Q +
Sbjct: 65  SFMENGEKKHFDFAYITIHGTPGENGILQGYFDLLGIPYSSCNVLVSAMTFNKFTCNQYL 124

Query: 101 SSCGVPVCPSILVNR-FTMDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
              G+ V  S+++ + F +  + +I+    P  IKP  GGSS G+  +K  + I   +  
Sbjct: 125 KGFGIRVAESLILRKGFEITDEEVINKIGLPCFIKPNAGGSSFGVTKVKTKEDIQPAI-- 182

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV----TEIAVPKSDFYSYELKYSSLNST 212
             ++   D+++IE ++ G E+TCG    +  +V    TE+ V  ++F+ Y  KY+   S 
Sbjct: 183 EKAFKESDEVMIEAFMRGTEITCGCYKTSDKEVVFPITEV-VSANEFFDYGAKYNG-ESQ 240

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
            + PA++P DI + V+ L    +  +GC G+ R D++      KV  LEIN  PGMT  S
Sbjct: 241 EITPARLPEDIAERVRLLTSAIYDILGCSGLIRIDYIITE-GEKVNLLEINTTPGMTATS 299

Query: 273 IFPEMAAYAGYSFRELLLWMVED 295
             P+    AG   ++++  ++E+
Sbjct: 300 FIPQQVRAAGLDIKDVMTDIIEN 322


>gi|255324604|ref|ZP_05365721.1| D-alanine--D-alanine ligase [Corynebacterium tuberculostearicum
           SK141]
 gi|255298510|gb|EET77810.1| D-alanine--D-alanine ligase [Corynebacterium tuberculostearicum
           SK141]
          Length = 353

 Score =  140 bits (353), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 100/350 (28%), Positives = 170/350 (48%), Gaps = 60/350 (17%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS-------------VGLVLA 47
           +AV+ GG S+E  VS  S  A  + L+   F+V  I + R              V  V+ 
Sbjct: 7   VAVIYGGRSTEHSVSCVSAGAIMNHLDPEKFEVVPIGITREGTWTPGTTEGLEIVDGVMP 66

Query: 48  HLKP----------------------------DLAFNVLHGNFGEDGLVQAILELLEIPY 79
            + P                            D+ F +LHG FGEDG +Q + EL  +PY
Sbjct: 67  EVNPGAELTLSLDPNARGQFHNVTDGTLFAEVDVVFPILHGPFGEDGTIQGLFELSGLPY 126

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFTMDSQHLISPPYVIKPLKGG 136
              G+LAS++ MDK  +K+V+++  +PV P +++      + D +  +  P  +KP +GG
Sbjct: 127 VGPGVLASSVGMDKEFTKKVLAAADLPVAPEVILKGRTELSEDEKQRLGLPVFVKPARGG 186

Query: 137 SSLGIIVIKKDQSIP--LDLLQSSSWNHGDQLLIEQYVDGIELTCGVM--GDASLDVTEI 192
           SS+G+  +   +  P  +DL    +    +++L+E  + G E+  GV+   D +L  +  
Sbjct: 187 SSIGVSKVNSWEEFPAAVDL----ALEDDEKILVEPEIVGQEVEIGVLHYADGTLLASVP 242

Query: 193 A----VPKSD--FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRS 246
           A    +  SD  FY ++ KY     T  +PA    ++ ++++ +A  A +A+ C G+SR 
Sbjct: 243 ALLAGIDDSDEGFYGFDTKYLDNVVTAEIPAPFAPELTEKLRDMAIRAFEALNCEGLSRV 302

Query: 247 DFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           DF        V+  EIN  PG TP+S++P++ A +G  +  LL  ++E A
Sbjct: 303 DFFV--TEESVYINEINTLPGFTPISMYPQVLAASGVEYPALLEALIEQA 350


>gi|164688446|ref|ZP_02212474.1| hypothetical protein CLOBAR_02091 [Clostridium bartlettii DSM
           16795]
 gi|164602859|gb|EDQ96324.1| hypothetical protein CLOBAR_02091 [Clostridium bartlettii DSM
           16795]
          Length = 301

 Score =  140 bits (353), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 93/299 (31%), Positives = 155/299 (51%), Gaps = 10/299 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP-DLAFNVLH 59
           + V+MGGISSEREVSL+SGK+  SA+    + V ++ +D  + +V    +  D A  +LH
Sbjct: 5   VVVIMGGISSEREVSLNSGKSVLSAINRDKYDVHELIIDEPMDVVNKMPEGVDFALLILH 64

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL---VNRF 116
           G +GEDG +QA+LE + I Y+    L S + MDK  SK+V+ +  +P  P  +   ++  
Sbjct: 65  GKYGEDGTIQAMLESMGIKYSGCDPLTSGICMDKNMSKKVLKASNIPTAPWTIAKSLDSI 124

Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
             D+   +  P  IKP  GGSS+    + + + +   + Q    +  D ++IE Y+ G E
Sbjct: 125 DYDAIEKMGYPVFIKPNSGGSSVATFKVDRKEDVYEAVRQGLEVD--DIVMIEGYLPGDE 182

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAKIPLDIYKEVQRLAFLAH 235
            T  ++        +I+ P ++F+ YE KY++   +       +  ++  E+   +    
Sbjct: 183 YTSFILNGEVFPTIKISSP-NEFFDYESKYATGAKAATEEVVYLEENLQNEINLRSEECW 241

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            A  CR   R DF+    + K + LE+N  PGMT  S+ P  A   G S+ EL+  ++E
Sbjct: 242 DAFNCRAFVRVDFILS--NGKFYVLELNTLPGMTKTSLIPRSANAKGISYSELIDKIIE 298


>gi|313204537|ref|YP_004043194.1| d-alanine--d-alanine ligase [Paludibacter propionicigenes WB4]
 gi|312443853|gb|ADQ80209.1| D-alanine--D-alanine ligase [Paludibacter propionicigenes WB4]
          Length = 325

 Score =  140 bits (353), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 89/323 (27%), Positives = 164/323 (50%), Gaps = 33/323 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKV-----------------SQIDVDRS-V 42
           +A++ GG SSE  VSL S     S ++   + +                  +I +D++  
Sbjct: 5   IAIVAGGNSSEVVVSLDSVAGLYSFMDKERYNLFIVTIVGSVWQVELSDDEKITIDKNDF 64

Query: 43  GLVLAHLKP--DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
               + +K   D A+  +HG  GE+G++Q   EL+ +PY+  G+LA+A++ +K    Q +
Sbjct: 65  SFTKSGVKTLFDFAYITIHGTPGENGILQGYFELIGLPYSCCGVLAAAITFNKFTCNQYL 124

Query: 101 SSCGVPVCPSILVNRFTMDSQHLISP----PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
              GV V  S+++      S   ++     P  +KP  GGSS G+  +K  + +   +  
Sbjct: 125 KGFGVRVSDSLVLRAGQTVSDEEVAQKIGFPCFVKPNVGGSSFGVTKVKSIEQLQPAI-- 182

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDAS----LDVTEIAVPKSDFYSYELKYSSLNST 212
             ++  GD+++IE ++ G E+TCG+    +    L +TE+ VPK++F+ ++ KY      
Sbjct: 183 EKAFTEGDEVMIEAFMSGTEITCGIYKTKTKTQVLPITEV-VPKNEFFDFDAKYKG-EVE 240

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
            + PA+I   + + VQ+L    +  +GC+GI R D++       +  LE+N  PGMT  S
Sbjct: 241 EITPARISTSLTERVQKLTSAIYDILGCKGIVRIDYIISE-GDVINLLEVNTTPGMTATS 299

Query: 273 IFPEMAAYAGYSFRELLLWMVED 295
             P+  A AG   ++++  ++E+
Sbjct: 300 FIPQQVAAAGLDIKDVMTEIIEN 322


>gi|28210053|ref|NP_780997.1| D-alanyl-alanine synthetase A [Clostridium tetani E88]
 gi|39931118|sp|Q898Z5|DDLB_CLOTE RecName: Full=D-alanine--D-alanine ligase B; AltName:
           Full=D-Ala-D-Ala ligase B; AltName: Full=D-alanylalanine
           synthetase B
 gi|28202488|gb|AAO34934.1| D-alanine--D-alanine ligase [Clostridium tetani E88]
          Length = 358

 Score =  140 bits (353), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 81/260 (31%), Positives = 140/260 (53%), Gaps = 12/260 (4%)

Query: 45  VLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCG 104
           VL + + +L F VLHG +GEDG +Q + +L+ +P    G+L+SAL MDK+ +K V+ +  
Sbjct: 95  VLFNKEVELVFPVLHGLYGEDGTIQGLCKLVGLPCVGPGVLSSALCMDKIYTKYVLENFK 154

Query: 105 VPVCPSILVNRFTMDSQ--------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
                 ++VN+F  +            +     IKP   GSS+GI      + +   L  
Sbjct: 155 FKQANYVVVNKFEYEKNKEEIIKEVEKLQYDVFIKPANSGSSVGITKAHNKEELLKGL-- 212

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMG--DASLDVTEIAVPKSDFYSYELKYSSLNSTHV 214
             ++ H   +L+E+ ++  E+   V+G  D    V    +P  +FY YE KY + NS  +
Sbjct: 213 EEAFIHDKNVLVEEAINAREIEVAVLGNDDPKAAVPGEIIPAKEFYDYEAKYQNENSELL 272

Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274
           +PA I     +E++ LA   ++ +GC G++R DFL D  S +V++ E+N  PG T +S++
Sbjct: 273 IPANIDNIKQEEIKELAIKIYKLLGCSGLARVDFLMDKESNEVYFNEVNTLPGFTKISMY 332

Query: 275 PEMAAYAGYSFRELLLWMVE 294
           P++   +G S+  L+  ++E
Sbjct: 333 PKLWEASGKSYSALIDELIE 352


>gi|325289877|ref|YP_004266058.1| D-alanine--D-alanine ligase [Syntrophobotulus glycolicus DSM 8271]
 gi|324965278|gb|ADY56057.1| D-alanine--D-alanine ligase [Syntrophobotulus glycolicus DSM 8271]
          Length = 360

 Score =  140 bits (353), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 103/340 (30%), Positives = 161/340 (47%), Gaps = 58/340 (17%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV------------------------ 38
           V+ GG S E EVSL S  +   AL+   +++  + +                        
Sbjct: 8   VIFGGESGEHEVSLVSAASVIQALDKEKYEILTVGITKKGQWYWGIDPQTWKLNNGTVSS 67

Query: 39  -DRSVGLVLAHLKP----------------DLAFNVLHGNFGEDGLVQAILELLEIPYTH 81
            D  V LV     P                DL F VLHG  GEDG +Q + E+  +PY  
Sbjct: 68  HDVQVTLVTDPANPRFIPVSGNTLPGDGKFDLIFPVLHGPKGEDGTIQGLFEIAGVPYVG 127

Query: 82  SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ---------HLISPPYVIKP 132
           SG+L  AL MDK R K V +  G+P+ P I V +  +D+            +S P  +KP
Sbjct: 128 SGVLGGALGMDKDRMKAVFAQAGLPIVPHITVLKNQIDNDPDSIRTKVMTELSFPVFVKP 187

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT-- 190
              GSS+GI  + ++  +   L  +++++  D+++IEQ V   E+   V+G+ +   T  
Sbjct: 188 ANLGSSVGITKVSRESDLGQALKLAAAYD--DKVVIEQGVKAREIELAVLGNETPQATVP 245

Query: 191 -EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
            EI +P  +FY YE KY   +S  ++PA++      ++Q  A    QA+   G+ R DF 
Sbjct: 246 GEI-IPCKEFYDYEAKYID-DSKLIIPAQLNKKTVNKLQEYAVTVFQAVDASGLGRVDF- 302

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           F   + ++F  EIN  PG T +S++P++    G S+ ELL
Sbjct: 303 FVTDTEEIFVNEINTLPGFTNISMYPKLWEATGVSYPELL 342


>gi|218295191|ref|ZP_03496027.1| D-alanine/D-alanine ligase [Thermus aquaticus Y51MC23]
 gi|218244394|gb|EED10919.1| D-alanine/D-alanine ligase [Thermus aquaticus Y51MC23]
          Length = 321

 Score =  140 bits (353), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 82/247 (33%), Positives = 137/247 (55%), Gaps = 12/247 (4%)

Query: 55  FNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
           F +LHG  GEDG +Q  LE+L  PY  +G+  SAL MDK  SK+V++  G+PV P + + 
Sbjct: 80  FPLLHGPMGEDGTIQGFLEMLGKPYVGAGVAGSALCMDKDFSKRVLAQAGIPVVPWVALY 139

Query: 115 RFTMDSQHLI--SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
           R       L+   PP+ +KP   GSS+GI  +++     L+     ++ H  + ++E+ +
Sbjct: 140 R---GETPLVPFEPPFFVKPANTGSSIGISRVERYAD--LEEALEEAFRHDRKAVVEKAL 194

Query: 173 DGI-ELTCGVMGDASLDVTEIAVPKSD--FYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
            G+ EL  GV+G+   + + +   + +  FY YE KY+   +  ++PA +     + VQ 
Sbjct: 195 SGVRELEVGVLGNVFGEASPVGEVRYEAPFYDYETKYTPGRAELLIPAPLDPGTEETVQE 254

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           +A  A++ +G RG++R DF       +++  E+N  PG TP S+FP +    G ++ ELL
Sbjct: 255 MALKAYKVLGLRGMARVDFFLA--EGELYLNEVNTIPGFTPTSMFPRLFLAKGLTYPELL 312

Query: 290 LWMVEDA 296
             +VE A
Sbjct: 313 RRLVELA 319


>gi|169351724|ref|ZP_02868662.1| hypothetical protein CLOSPI_02505 [Clostridium spiroforme DSM 1552]
 gi|169291946|gb|EDS74079.1| hypothetical protein CLOSPI_02505 [Clostridium spiroforme DSM 1552]
          Length = 346

 Score =  140 bits (352), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 82/281 (29%), Positives = 148/281 (52%), Gaps = 25/281 (8%)

Query: 34  SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDK 93
           + ++V+    L+  H   D+AF VLHG +GEDG +Q + EL +IPY  + +L S++SMDK
Sbjct: 66  NSVEVENVFELLKEH---DVAFPVLHGLYGEDGTIQGLFELTKIPYVGARVLCSSVSMDK 122

Query: 94  MRSKQVVSSCGVPVCPSILVNR--------FTMDSQHL----------ISPPYVIKPLKG 135
           + +K+++ +  +P   S  V +         T D + +          I  P  IK  + 
Sbjct: 123 IYTKKILDTVKIPQVKSAYVKKRYDNRLVIITKDFEEIYDVEEYIVNEIGMPCFIKASRS 182

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA-- 193
           GSSLG       + +   L  ++ ++    +++E+ +D IEL   V+G+  + V+ +   
Sbjct: 183 GSSLGCYRCDNREDLIGKLEAAAKYDR--HIVVEENIDCIELETAVLGNDDVIVSRVGQI 240

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
           +P  +FY++E KY    S   +PA +   I ++++  A  A +A+   G+SR DF  D  
Sbjct: 241 MPHGEFYTFESKYEDAESKTCIPALVDEKIQEKIREYAIKAFKAVDGHGLSRVDFFLDKK 300

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           +  ++  EIN  PG T +S++P++    G S+ +LL  ++E
Sbjct: 301 TNNIYLNEINTMPGFTKISMYPQLMNDFGISYSDLLDKLIE 341


>gi|166710205|ref|ZP_02241412.1| D-alanyl-alanine synthetase A [Xanthomonas oryzae pv. oryzicola
           BLS256]
          Length = 367

 Score =  140 bits (352), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 102/346 (29%), Positives = 167/346 (48%), Gaps = 55/346 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD--------------------- 39
           + ++ GG S+E EVSL S +    AL+   F+   I +D                     
Sbjct: 6   VGLIFGGKSAEHEVSLQSARNILDALDPQRFEPVLIGIDKQGQWHVNDPDSFLLHADDPA 65

Query: 40  --------RSVGLV----LAHLKP----------DLAFNVLHGNFGEDGLVQAILELLEI 77
                   R V L+       L+P          D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  RIALHRSGRGVALLPGAQQQQLRPIQPEQALAQIDVVFPIVHGTLGEDGSLQGLLRMANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT---MDSQHLISP---PYVIK 131
           P+  SG+L SA++MDK  +K+V+   G+ V P +  +R T    D   LI+    P  +K
Sbjct: 126 PFVGSGVLGSAVAMDKDMAKRVLRDAGLAVAPFVCFDRHTAAHADVDTLIAQLGLPLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA--SLDV 189
           P   GSS+G+  ++   +    L  + +++H  ++L+E  V G E+ C V+G+A     V
Sbjct: 186 PANQGSSVGVSQVRTADAFAAALALALAYDH--KVLVEAAVAGREIECAVLGNAVPHASV 243

Query: 190 TEIAVPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               V    FYSY  KY S +    V+PA I     + +Q++A  A+QA+GC G++R D 
Sbjct: 244 CGEVVVHDAFYSYATKYISEHGAEIVIPADIDAQTQQRIQQIAVQAYQALGCAGMARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
                 R V   E+N  PG T +S++P++   +G  +R L+  ++E
Sbjct: 304 FLCADGRIVIN-EVNTLPGFTRISMYPKLWQASGLDYRGLITRLIE 348


>gi|311742955|ref|ZP_07716763.1| D-alanine-D-alanine ligase [Aeromicrobium marinum DSM 15272]
 gi|311313635|gb|EFQ83544.1| D-alanine-D-alanine ligase [Aeromicrobium marinum DSM 15272]
          Length = 356

 Score =  140 bits (352), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 98/332 (29%), Positives = 166/332 (50%), Gaps = 47/332 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD--------------------- 39
           +AV+ GG SSE  VS  + +   +AL+   + V  I +                      
Sbjct: 14  LAVVFGGRSSEHGVSCLTAREVLAALDPDRYDVRPIGITTDGAWVEETARWDDLAPGTLP 73

Query: 40  --RSVGLVLAHLKP---DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKM 94
             R+ G V A  +    D  F +LHG +GEDG VQ +LE+ +I Y  +G+LASA+SMDK 
Sbjct: 74  AVRADGPVFAWERLAEFDAVFPLLHGPWGEDGTVQGLLEMADIRYVGAGVLASAVSMDKP 133

Query: 95  RSKQVVSSCGVPVCPSILVNRFTMDSQ--------HLISPPYVIKPLKGGSSLGIIVIKK 146
            +K V S+ G+P  P + +  +  + +          +  P  +KP + GSS G+ +++ 
Sbjct: 134 FTKTVFSAAGLPQIPYVTIRPWEWNRERSRVEARIRALGLPVFVKPARAGSSSGVAMVES 193

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGI-ELTCGVMGD------ASL--DVTEIAVPKS 197
              +   ++ + +++   ++++E +  G  EL CGV+        AS+  ++T  A    
Sbjct: 194 WDDLDAAVVAARAFDP--KVIVEAFARGKRELECGVLQGPDGRPVASVVGEITVAAESDH 251

Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
           DFY +E KY    S +++PA IP+ + + ++  A  A +A+GC G++R DF        V
Sbjct: 252 DFYDFEAKYLDGTSVNLVPADIPVTLSERIRTYAVQAFEAVGCEGLARVDFFLTDDGLVV 311

Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
              EIN  PG TP S+FP +   +G  + +L+
Sbjct: 312 N--EINTMPGFTPFSMFPLLWEASGVRYEDLV 341


>gi|157147020|ref|YP_001454339.1| D-alanyl-alanine synthetase A [Citrobacter koseri ATCC BAA-895]
 gi|157084225|gb|ABV13903.1| hypothetical protein CKO_02797 [Citrobacter koseri ATCC BAA-895]
          Length = 371

 Score =  140 bits (352), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 94/346 (27%), Positives = 170/346 (49%), Gaps = 55/346 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR--------SVGLVL-----A 47
           + ++ GG S+E EVSL S K    A++ A F V  + +D+        +   +L     A
Sbjct: 12  VGIVFGGKSAEHEVSLQSAKNIVDAIDKARFDVVLLGIDKQGQWHVSDAENYLLNANDPA 71

Query: 48  H--LKP----------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
           H  L+P                            D+ F ++HG  GEDG +Q +L +  +
Sbjct: 72  HIALRPSSTSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 131

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIK 131
           P+  S +L SA  MDK  +K+++   G+ + P I + R   D+         +  P  +K
Sbjct: 132 PFVGSDVLGSAACMDKDVTKRLLRDAGLNIAPFITLTRANRDAIRFAEVASRLGLPLFVK 191

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  +  +      +  +  ++H  ++++EQ + G E+ C V+G+     + 
Sbjct: 192 PANQGSSVGVSKVTSEAQYEQAVALAFEFDH--KVVVEQGIKGREIECAVLGNDHPQAST 249

Query: 192 IA--VPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               V  SDFY+Y+ KY   N    V+PA+IP ++  +++++A  A+Q +GC G++R D 
Sbjct: 250 CGEIVLNSDFYAYDTKYIDGNGAQVVVPAQIPQEVNDKIRQIAIQAYQTLGCAGMARVD- 308

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           +F     +V   EIN  PG T +S++P++   +G  + +L+  ++E
Sbjct: 309 VFLTAENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIE 354


>gi|298489811|ref|YP_003719988.1| D-alanine/D-alanine ligase ['Nostoc azollae' 0708]
 gi|298231729|gb|ADI62865.1| D-alanine/D-alanine ligase ['Nostoc azollae' 0708]
          Length = 351

 Score =  140 bits (352), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 98/340 (28%), Positives = 163/340 (47%), Gaps = 48/340 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASAL----------------EDAGF----KVSQIDVDR 40
           + +L GG S E EVS+ S +  A+AL                +  GF    +V+Q  +  
Sbjct: 6   VGLLFGGRSGEHEVSIISARGIANALSAEENSHKYEIMPFYIQKDGFWQAGEVAQQVLTS 65

Query: 41  SVG-------LVLAHLKP-----DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
            V          L    P     DL F +LHG  GEDG +QA+L L+++P+  SG+L SA
Sbjct: 66  GVAKEHPGNRANLWQFPPQTAEIDLWFPILHGPNGEDGTIQALLTLMQVPFVGSGVLGSA 125

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP------------PYVIKPLKGG 136
             MDK+  K   +  G+P      + R  + S   + P            PY +KP   G
Sbjct: 126 TGMDKIAMKTAFAQAGLPQVKYKALTRAQIWSNPCVFPKLCDEIEATLGYPYFVKPANLG 185

Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA--V 194
           SS+GI  ++  Q +   L  +++++   ++++E  V   E+ C V+G+ +   + I    
Sbjct: 186 SSVGIAKVQSRQELEAALDNAATYDR--RIIVEAGVVAREVECAVLGNDNPKASVIGEIT 243

Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
             SDFY YE KY+   +   +PA +P    +++Q  A  A  A+   G++R DF +   +
Sbjct: 244 FDSDFYDYETKYTQGKADLFIPAHLPESAVQQIQEKALQAFTAVDAAGLARVDFFYVEAT 303

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            ++   EIN  PG T  S++P++ A  G SF +L+  +++
Sbjct: 304 GEILINEINTLPGFTSTSMYPQLWANTGISFPKLVDQLIQ 343


>gi|226305903|ref|YP_002765863.1| D-alanine--D-alanine ligase [Rhodococcus erythropolis PR4]
 gi|259645171|sp|C0ZXN9|DDL_RHOE4 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|226185020|dbj|BAH33124.1| D-alanine--D-alanine ligase [Rhodococcus erythropolis PR4]
          Length = 368

 Score =  140 bits (352), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 89/268 (33%), Positives = 145/268 (54%), Gaps = 20/268 (7%)

Query: 43  GLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS 102
           G VLA +  D+ F VLHG +GEDG +Q +LEL  +PY   G+LASA  MDK  +K+++++
Sbjct: 99  GAVLASV--DVVFPVLHGAYGEDGTIQGLLELAGVPYVGPGVLASAAGMDKEFTKKLLAA 156

Query: 103 CGVPVCPSIL----VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS 158
            G+PV   ++    +   T + +  +  P  +KP +GGSS+GI  +       LD   + 
Sbjct: 157 EGLPVGVQVVLRPGIATLTEEQKAELGLPVFVKPARGGSSIGITRVSNWDG--LDGAIAH 214

Query: 159 SWNHGDQLLIEQYVDGIELTCGVM----GDASLD-VTEIAVPKSD-----FYSYELKYSS 208
           +  H  ++++E  + G E+ CGV+    GD     V EI +P +D     FY ++ KY  
Sbjct: 215 ARLHDPKVIVEGAIIGREVECGVLEFPNGDVKASVVAEIRMPDADTDSDAFYDFDTKYLD 274

Query: 209 LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268
                 +PAK+   +  +++ LA  A +A+ C+G+SR DF     +      EIN  PG 
Sbjct: 275 DVCEFDIPAKLDESVSDQIRELAVRAFKALDCQGLSRVDFFV--TADGPVINEINTMPGF 332

Query: 269 TPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           T +S++P+M    G  +R L+  +V+ A
Sbjct: 333 TSISMYPKMWNATGIDYRTLISTLVDTA 360


>gi|78058364|gb|ABB17543.1| VanG2 [Enterococcus faecalis]
          Length = 349

 Score =  140 bits (352), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 103/340 (30%), Positives = 160/340 (47%), Gaps = 56/340 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------------------- 38
           +A++ GG S+E EVSL S  A    +    F +  I +                      
Sbjct: 6   IAIIFGGNSTEYEVSLQSASAVFENINTKKFDIVPIGITRNGDWYHYTGKKEKIANNTWF 65

Query: 39  -------------DRSVGLVLAH-------LKPDLAFNVLHGNFGEDGLVQAILELLEIP 78
                        +RSV   +         +K DL F VLHG  GEDG +Q + EL  IP
Sbjct: 66  EDNENLYSVAVSQNRSVKGFIEFKEEKFYIIKVDLIFPVLHGKNGEDGTLQGLFELAGIP 125

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIKP 132
                 L+SAL MDK ++ ++VS  G+ V P  +  +F+     L      +S P  +KP
Sbjct: 126 VVGCDTLSSALCMDKDKAHKLVSLAGISV-PKSVTFKFSGKKAALKKIEKELSYPLFVKP 184

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL---DV 189
           ++ GSS GI  + K Q   L+     ++ H  ++++E+ ++G E+ C V+G   L    V
Sbjct: 185 VRAGSSFGITKVTKQQE--LENAIQLAFEHDAEVIVEETINGFEVGCAVLGIDELIVGRV 242

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
            EI +  S F+ Y  KY+  +S   +PA+I  +  K +Q  A   ++A+GC G SR D  
Sbjct: 243 DEIELS-SGFFDYTEKYTLKSSKIYMPARIDAEAEKRIQETAVTIYKALGCSGFSRVDMF 301

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           + P S ++ + E+N  PG T  S +P M    G SF ++L
Sbjct: 302 YTP-SGEIVFNEVNTIPGFTSHSRYPNMMKGIGLSFAQML 340


>gi|291005733|ref|ZP_06563706.1| D-alanine--D-alanine ligase [Saccharopolyspora erythraea NRRL 2338]
          Length = 308

 Score =  140 bits (352), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 93/308 (30%), Positives = 163/308 (52%), Gaps = 18/308 (5%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62
           +L GG+S ER+VSL SG+  ++AL   G  V++ D D  +   +   +PD     LHG  
Sbjct: 1   MLAGGLSHERDVSLRSGRRLSAALRSVGMTVAEWDADSRLLSRIEQERPDAVVVALHGGE 60

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT---MD 119
           GE+G VQ++L++  IPY  +   A   + DK  +K  ++  G+     +++   T   + 
Sbjct: 61  GENGAVQSVLDMYGIPYVGTDPRACRRAWDKPTAKAELARSGLTTPDWVVLPHATFRELG 120

Query: 120 SQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
           +Q ++         P ++KP +GGS+LG  V++    +P  ++ + S+  GD +L+E+Y+
Sbjct: 121 AQSVLDALVAKLGLPLMLKPDQGGSALGARVVRDAADLPSAMVGALSY--GDTVLVEKYI 178

Query: 173 DGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           +G E+  GV+    G  +L   +I    +  Y Y  +Y++  +T+  PA++  +      
Sbjct: 179 EGTEVAIGVLDGPDGPEALPAVQIEA-TNGVYDYTARYTAGLTTYRTPAELSPETAAAAG 237

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
            LA  AH+ +G R +SR+D + D     V +LE+NV PG+T  S+ P     AG S  ++
Sbjct: 238 DLAVAAHRLLGLRDVSRTDAIID-RDGTVHFLEVNVSPGLTETSLLPMAIEAAGRSLGDV 296

Query: 289 LLWMVEDA 296
              +VE A
Sbjct: 297 FATLVERA 304


>gi|256381067|ref|YP_003104727.1| D-alanine--D-alanine ligase [Actinosynnema mirum DSM 43827]
 gi|255925370|gb|ACU40881.1| D-alanine--D-alanine ligase [Actinosynnema mirum DSM 43827]
          Length = 314

 Score =  140 bits (352), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 107/310 (34%), Positives = 161/310 (51%), Gaps = 18/310 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG+S EREVSL SG+   +AL  AG  V + D D  +   L   +PD     LHG
Sbjct: 6   VAVLSGGLSHEREVSLRSGRRLTAALRSAGLVVEEWDADGQLLSRLKEHRPDAVVVALHG 65

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV-----PVCPSI---- 111
             GE+G VQ ILEL  +P+  +   A   + DK  +K  +S  G+      V P      
Sbjct: 66  GEGENGSVQTILELAGVPFVGADSRACRRAWDKPTAKGELSRAGLATPEWAVLPHATFRE 125

Query: 112 LVNRFTMDSQ-HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           L  R  +DS    +  P ++KP +GGS+LG  V++    +P  ++   ++  GD +L E+
Sbjct: 126 LGARPVLDSMIDRLGLPLMLKPAQGGSALGAQVVRDAADLPSAMVGCLAY--GDTVLAER 183

Query: 171 YVDGIELTC----GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE 226
           +V+G+E+      G  G  +L   EI VP+S  Y Y  +Y++  +    PA++     K 
Sbjct: 184 FVEGVEVAVAVVDGPDGPHALPPVEI-VPESGVYDYTSRYTAGLTDFHAPARLDEATAKA 242

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           V  LA  AH+ +G R +SR+D + +P    V +LE+NV PG+T  S  P     AG S  
Sbjct: 243 VGELAVSAHRLLGLRDVSRTDAIVEP-DGTVHFLEVNVSPGLTETSTLPMAVEAAGTSLG 301

Query: 287 ELLLWMVEDA 296
           E+   ++E A
Sbjct: 302 EIYAALIERA 311


>gi|212638041|ref|YP_002314561.1| D-alanyl-alanine synthetase A [Anoxybacillus flavithermus WK1]
 gi|212559521|gb|ACJ32576.1| D-alanyl-D-alanine ligase [Anoxybacillus flavithermus WK1]
          Length = 355

 Score =  140 bits (352), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 96/332 (28%), Positives = 159/332 (47%), Gaps = 39/332 (11%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI----------------DVDRSVGL 44
           + +L GG S E +VSL + ++  +A+    F V  I                +V     L
Sbjct: 13  LGILYGGKSPEHKVSLQTARSVINAINKEKFTVVPIYITTDGQWLRGEAIEGEVQHVNEL 72

Query: 45  VLAHLKPDLA---------FNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
                 P LA         F +LHG  GEDG VQ +LELL +PY  +G+LASA+ MDK+ 
Sbjct: 73  AFQQGLPALALIANGIDVIFPLLHGPNGEDGTVQGMLELLNVPYVGNGVLASAVGMDKVV 132

Query: 96  SKQVVSSCGVPVCPSILVNRFTMDSQ---------HLISPPYVIKPLKGGSSLGIIVIKK 146
            KQ+ +  G+     +   +   + Q           I  P  +KP   GSS+GI   K 
Sbjct: 133 MKQLFAQAGLKQARYVFFLKNEWEGQKENVYETVEQEIGYPCFVKPANAGSSVGISKCKN 192

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS--LDVTEIAVPKSDFYSYEL 204
            + +     ++  ++   ++++E+ + G E+  GV+G+      V    VPK +FY YE 
Sbjct: 193 REQLQTAFQEAFRYDR--KVIVEEAIIGREVEIGVIGNDKPICSVVGEIVPKKEFYDYEA 250

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           KY   N+   +PA +    Y+ ++++A  A + +   G+ R+DF F     +V+  E+N 
Sbjct: 251 KYVDGNTELFIPANVTDKEYETIKQMALAAFKVLDLAGLVRADF-FLTADGEVYINEVNT 309

Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            PG TP S+FP +  + G  + EL+  +++ A
Sbjct: 310 MPGFTPFSMFPLLWKHTGIPYEELIERLIQLA 341


>gi|88811835|ref|ZP_01127088.1| D-alanylalanine synthetase [Nitrococcus mobilis Nb-231]
 gi|88790719|gb|EAR21833.1| D-alanylalanine synthetase [Nitrococcus mobilis Nb-231]
          Length = 315

 Score =  140 bits (352), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 104/302 (34%), Positives = 158/302 (52%), Gaps = 23/302 (7%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59
           +AVL GG S+ERE+SL SG     AL   G +   ID D R +G   A  + D AF  LH
Sbjct: 17  VAVLAGGWSAEREISLQSGAVVLEALRRRGVEAHHIDPDERPLG---ALGEFDRAFIALH 73

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G  GEDG++Q  LE++ +PYT +G+L SAL MDK+R+K V  + G+P  P+ L     +D
Sbjct: 74  GRGGEDGVIQGALEVMGLPYTGTGVLGSALGMDKLRTKLVWRALGLPT-PAFL----RLD 128

Query: 120 SQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
           S+  +         P ++KP + GSSLG+  +    ++     ++  ++   ++  E+++
Sbjct: 129 SEAALDRVEAELGYPVMVKPNREGSSLGMTRVNGSAALLEAWRKACRYDR--EVFAERWI 186

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
           DG E T  ++G+ +L V  I      FY ++ KY +  +    P  +       +  LA 
Sbjct: 187 DGQEYTVSLLGEQALPVIRIE-SAGVFYDFDAKYRAAETRLHCPCGLVALAEAALAELAA 245

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
            A +A+G  G  R D L D  +  V W LE+N  PGMT  S+ P  A  AG    E L+W
Sbjct: 246 AAFEAVGGSGWGRVDLLRD--AEGVAWLLEVNTVPGMTDHSLVPMAARAAGLDMDE-LVW 302

Query: 292 MV 293
            +
Sbjct: 303 RI 304


>gi|283783672|ref|YP_003374426.1| D-ala D-ala ligase N-terminal domain protein [Gardnerella vaginalis
           409-05]
 gi|283441575|gb|ADB14041.1| D-ala D-ala ligase N-terminal domain protein [Gardnerella vaginalis
           409-05]
          Length = 380

 Score =  140 bits (352), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 87/281 (30%), Positives = 141/281 (50%), Gaps = 37/281 (13%)

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV 105
           L H+  D  F VLHG  GEDG +Q +LE++++PY   G+LASA  MDK  +KQ+  + G+
Sbjct: 101 LGHI--DAVFPVLHGPNGEDGTLQGLLEMMQVPYVGCGVLASAACMDKYYAKQLFKAAGI 158

Query: 106 PVCPSILV----------NRFTMDSQHLISP--------PYVIKPLKGGSSLGIIVIKKD 147
            V P I +          NRF   ++ +++         P  +KP + GSS G+  ++  
Sbjct: 159 DVAPGIALDARKFASDAENRFDAYAEEILAQVEAAKLEYPLFVKPSRAGSSFGVTKVESR 218

Query: 148 QSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM-------------GDASLDVTEIAV 194
            +  L      +  H  ++L+EQ +D  E+ C V+             G+  LD  E   
Sbjct: 219 DAKALAEAIFEASEHDWRVLVEQGIDAREIECAVLAARDGEEPKASWPGEVVLDKREAG- 277

Query: 195 PKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
            +  FY ++ KY    ++HV +PA +P +  + V++ A  A +A   RG+SR D      
Sbjct: 278 -EDQFYDFDSKYMDSAASHVEVPANLPAETLERVRKTALAAFKAADGRGLSRVDSFVTKD 336

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            R V   EIN  PG TP+S++P+     G S+ +L+  ++E
Sbjct: 337 GR-VILNEINTMPGFTPISMYPKAWEATGISYSDLITKLIE 376


>gi|239982537|ref|ZP_04705061.1| D-alanyl-alanine synthetase A [Streptomyces albus J1074]
 gi|291454379|ref|ZP_06593769.1| D-alanyl-alanine synthetase A [Streptomyces albus J1074]
 gi|291357328|gb|EFE84230.1| D-alanyl-alanine synthetase A [Streptomyces albus J1074]
          Length = 390

 Score =  140 bits (352), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 93/262 (35%), Positives = 135/262 (51%), Gaps = 21/262 (8%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+ F VLHG +GEDG  Q +LEL  IPY  SG+LASA+  DK   K+V +S G+PV P +
Sbjct: 125 DVVFPVLHGPYGEDGTFQGLLELAGIPYVGSGVLASAVGQDKEYMKRVFTSFGLPVGPYL 184

Query: 112 LVN------------RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
           ++                +D       P  +KP +GGSS+GI   K D    LD   + +
Sbjct: 185 VIRPREWDADEAAARARVIDFAGEHGWPLFVKPARGGSSVGI--TKVDGPEGLDAALAEA 242

Query: 160 WNHGDQLLIEQYVDGIELTCGVM-----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHV 214
             H  ++L+E  + G E+ CGV+       AS+      V   DFY +E KY   ++  +
Sbjct: 243 RRHDPKVLVESLLRGREIECGVLEFEDGPRASVPAEIPPVQAHDFYDFEAKYID-SAPGL 301

Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274
           +PA +  +   EVQRLA  A +A  C G+ R+DF        V   EIN  PG TP+S++
Sbjct: 302 VPAPLTEEQTAEVQRLAVEAFEAASCEGLVRADFFLTEDGGFVI-NEINTMPGFTPISMY 360

Query: 275 PEMAAYAGYSFRELLLWMVEDA 296
           P M   +G  +  L+  +V+ A
Sbjct: 361 PRMWQESGVDYPALVDQLVQAA 382


>gi|118464178|ref|YP_883000.1| D-alanyl-alanine synthetase A [Mycobacterium avium 104]
 gi|189083043|sp|A0QJB2|DDL_MYCA1 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|118165465|gb|ABK66362.1| D-alanine--D-alanine ligase [Mycobacterium avium 104]
          Length = 369

 Score =  140 bits (352), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 86/260 (33%), Positives = 141/260 (54%), Gaps = 20/260 (7%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+ F VLHG +GEDG +Q +LEL  +PY  +G+ ASA  MDK  +K++ ++ G+P+    
Sbjct: 107 DVVFPVLHGPYGEDGTIQGLLELAGVPYVGAGVFASAAGMDKEFTKKLFAAEGLPIGDYA 166

Query: 112 LV----NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK-DQSIPLDLLQSSSWNHGDQL 166
           ++    +  ++  +  +  P  +KP +GGSS+G+  +   D+   LD   +++ +H  ++
Sbjct: 167 VLRPSQSTLSLQDRERLGLPVFVKPARGGSSIGVSRVSSWDE---LDAAVAAARDHDPKV 223

Query: 167 LIEQYVDGIELTCGV--MGDASLD---VTEIAVP-----KSDFYSYELKYSSLNSTHVLP 216
           ++E  + G EL CGV  M D ++    V EI V      +  FY +  KY    +   +P
Sbjct: 224 IVEAAIAGRELECGVLEMPDGTVQASTVGEIRVAGVRGREDSFYDFATKYLDDTAELDVP 283

Query: 217 AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPE 276
           AK+  +I   V+ LA  A +A+ C+G++R DF            EIN  PG T +S++P 
Sbjct: 284 AKVDDEIADAVRELAIRAFKAVDCQGLARVDFFL--TETGPVLNEINTMPGFTTISMYPR 341

Query: 277 MAAYAGYSFRELLLWMVEDA 296
           M A +G  +  LL  MVE A
Sbjct: 342 MWAASGVDYPSLLATMVETA 361


>gi|254966997|gb|ACT97534.1| putative D-alanine-D-alanine ligase [uncultured organism]
          Length = 350

 Score =  140 bits (352), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 104/343 (30%), Positives = 162/343 (47%), Gaps = 55/343 (16%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV------------------DRSVGL 44
           VL GG+S+ER+VSLSS       L + G     +DV                  D  + +
Sbjct: 5   VLAGGLSTERDVSLSSAAGICRTLVEKGHDAFLLDVFMGLENAPENLEDVFTLPDHGLEI 64

Query: 45  V--LAHLKPDL----------------------------AFNVLHGNFGEDGLVQAILEL 74
           V  ++  +PDL                             F  LHG  GE+G +QA  +L
Sbjct: 65  VKNISTEEPDLEAVKASRPDQSDCFFGPNVIELCRLADITFLGLHGGEGENGKLQASFDL 124

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGV--PVCPSILVNRFTMDSQHL-ISPPYVIK 131
           L+I YT    L  A++M K  +KQ+    GV  P   +I  N      Q L ++ P V+K
Sbjct: 125 LDIKYTGPDSLGCAVAMHKGVAKQIFLESGVDTPGGGTIYKNSEDQSYQSLGLTLPVVVK 184

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P  GGSS+G+ ++  D+     L    S+++ D+L++E Y+ G E  CG++   +L   E
Sbjct: 185 PCSGGSSIGVYIVNTDEEYAEAL--KKSFHYEDELVVEPYIKGREFACGIIDGTALPPIE 242

Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
           I +PK+ F+ Y  KY    ++ V PA IP ++ + ++ L   A  A+     SR+DFL D
Sbjct: 243 I-IPKTGFFDYANKYQDGATSEVCPADIPEEVAERMKELTVKAFNALKLNVYSRADFLLD 301

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
                +F LE+N  PGMT  S+ P+ A   G  + +L   +++
Sbjct: 302 A-DGNLFCLEMNTLPGMTSASLLPKEAKVYGIEYGDLCELIIK 343


>gi|311740529|ref|ZP_07714356.1| D-alanine-D-alanine ligase [Corynebacterium pseudogenitalium ATCC
           33035]
 gi|311304049|gb|EFQ80125.1| D-alanine-D-alanine ligase [Corynebacterium pseudogenitalium ATCC
           33035]
          Length = 353

 Score =  140 bits (352), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 101/350 (28%), Positives = 170/350 (48%), Gaps = 60/350 (17%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS-------------VGLVLA 47
           +AV+ GG S+E  VS  S  A  + L+   F+V  I + R              V  V+ 
Sbjct: 7   VAVIYGGRSTEHSVSCVSAGAIMNHLDPEKFEVVPIGITREGTWTPGTTEGLEIVDGVMP 66

Query: 48  HLKP----------------------------DLAFNVLHGNFGEDGLVQAILELLEIPY 79
            + P                            D+ F +LHG FGEDG VQ + EL  +PY
Sbjct: 67  EVSPGAELTLSLDPNAKGQFHNVTDGTLFAEVDVVFPILHGPFGEDGTVQGLFELSGLPY 126

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFTMDSQHLISPPYVIKPLKGG 136
              G+LAS++ MDK  +K+V+++  +PV P +++      + D +  +  P  +KP +GG
Sbjct: 127 VGPGVLASSVGMDKEFTKKVLAAADLPVAPEVILKGRTELSEDEKQQLGLPVFVKPARGG 186

Query: 137 SSLGIIVIKKDQSIP--LDLLQSSSWNHGDQLLIEQYVDGIELTCGVM--GDASLDVTEI 192
           SS+G+  +   +  P  +DL    +    +++L+E  + G E+  GV+   D +L  +  
Sbjct: 187 SSIGVSKVTTWEEFPAAVDL----ALEDDEKILVEPEIVGKEVEIGVLHYADGTLLASVP 242

Query: 193 A----VPKSD--FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRS 246
           A    +  SD  FY ++ KY     T  +PA    ++ ++++ +A  A +A+ C G+SR 
Sbjct: 243 ALLAGIDDSDEGFYGFDTKYLDNVVTAEIPAPFAPELTEKLRDMAIRAFEALNCEGLSRV 302

Query: 247 DFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           DF        V+  EIN  PG TP+S++P++ A +G  +  LL  ++E A
Sbjct: 303 DFFV--TKDSVYINEINTLPGFTPISMYPQVLAASGVEYPALLEALIEQA 350


>gi|41409117|ref|NP_961953.1| D-alanyl-alanine synthetase A [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|254776254|ref|ZP_05217770.1| D-alanyl-alanine synthetase A [Mycobacterium avium subsp. avium
           ATCC 25291]
 gi|81413470|sp|Q73VJ4|DDL_MYCPA RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|41397937|gb|AAS05567.1| DdlA [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 369

 Score =  140 bits (352), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 86/260 (33%), Positives = 141/260 (54%), Gaps = 20/260 (7%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+ F VLHG +GEDG +Q +LEL  +PY  +G+ ASA  MDK  +K++ ++ G+P+    
Sbjct: 107 DVVFPVLHGPYGEDGTIQGLLELAGVPYVGAGVFASAAGMDKEFTKKLFAAEGLPIGDYA 166

Query: 112 LV----NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK-DQSIPLDLLQSSSWNHGDQL 166
           ++    +  ++  +  +  P  +KP +GGSS+G+  +   D+   LD   +++ +H  ++
Sbjct: 167 VLRPSQSTLSLQDRERLGLPVFVKPARGGSSIGVSRVSSWDE---LDAAVAAARDHDPKV 223

Query: 167 LIEQYVDGIELTCGV--MGDASLD---VTEIAVP-----KSDFYSYELKYSSLNSTHVLP 216
           ++E  + G EL CGV  M D ++    V EI V      +  FY +  KY    +   +P
Sbjct: 224 IVEAAIAGRELECGVLEMPDGTVQASTVGEIRVAGVRGREDSFYDFATKYLDDTAELDVP 283

Query: 217 AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPE 276
           AK+  +I   V+ LA  A +A+ C+G++R DF            EIN  PG T +S++P 
Sbjct: 284 AKVDDEIADAVRELAIRAFKAVDCQGLARVDFFL--TETGPVLNEINTMPGFTTISMYPR 341

Query: 277 MAAYAGYSFRELLLWMVEDA 296
           M A +G  +  LL  MVE A
Sbjct: 342 MWAASGVDYPSLLATMVETA 361


>gi|291303857|ref|YP_003515135.1| D-alanine/D-alanine ligase [Stackebrandtia nassauensis DSM 44728]
 gi|290573077|gb|ADD46042.1| D-alanine/D-alanine ligase [Stackebrandtia nassauensis DSM 44728]
          Length = 317

 Score =  140 bits (352), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 96/307 (31%), Positives = 154/307 (50%), Gaps = 16/307 (5%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62
           VL GG+S EREVSL SG+  A AL  A       DVD ++   L    PD     LHG  
Sbjct: 9   VLAGGLSYEREVSLRSGRRVADALSRANVHAELRDVDTNLLPDLIADPPDAVVFALHGGN 68

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT---MD 119
           GEDG ++++L+L+ IPY      A+  + DK  +K ++   G+P    I + R T   + 
Sbjct: 69  GEDGSLRSVLDLIGIPYVGPDADAARRAWDKPTAKALLRDAGLPTPEWIALPRETFSDLG 128

Query: 120 SQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
           +  L+         P  +KP +GGS LG+ V++  + +P  ++    + +GD  L+E + 
Sbjct: 129 AAKLLDRIVDKLGVPLAVKPARGGSGLGVAVVRTAEELPAAMI--GCFAYGDVALVEAFA 186

Query: 173 DGIELTCGVM--GDASLDVTEIAV-PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
            G ++  GV+  GD       + + P  D Y +  +Y+   ST  +PA++   + ++V  
Sbjct: 187 PGKDIAVGVVDTGDGPRVFPAVEIEPSGDAYDFAARYNPGASTWHVPARLAPRVSEDVAA 246

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           +A  A + +G R +SR D +  P +     LE  V PGMT  S+ P     AG+   EL+
Sbjct: 247 VATAAFRTLGLRDLSRIDMMV-PQAGPPLVLEAKVVPGMTETSLLPMACEAAGHDLGELM 305

Query: 290 LWMVEDA 296
             +V+ A
Sbjct: 306 AGLVDRA 312


>gi|302874101|ref|YP_003842734.1| D-alanine/D-alanine ligase [Clostridium cellulovorans 743B]
 gi|307689641|ref|ZP_07632087.1| D-alanine--D-alanine ligase [Clostridium cellulovorans 743B]
 gi|302576958|gb|ADL50970.1| D-alanine/D-alanine ligase [Clostridium cellulovorans 743B]
          Length = 298

 Score =  140 bits (352), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 94/293 (32%), Positives = 145/293 (49%), Gaps = 10/293 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGGISSER VSL SG+     L    ++V  I +D    +V      D AF  LHG
Sbjct: 3   VGVIMGGISSERAVSLKSGEEVVKYLNRNKYEVIPIVIDSKKQVVEKVQGIDFAFIALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF-TMD 119
            FGEDG +Q ILE LEIPY+   +L SA+ M+K  +K ++ +  +   P I V     +D
Sbjct: 63  KFGEDGTIQGILEALEIPYSGCSVLTSAICMNKGITKSLLQNANINTAPWITVKSVEEID 122

Query: 120 SQHLIS--PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            + + S   P  IKP  GGSS+    +K +  +   + +   ++   +++IE+Y+ G E+
Sbjct: 123 YEKIKSLGYPVFIKPNNGGSSVATFCVKDEGEVEKAVKEGLKYD--TEVMIEKYIKGEEI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           T  ++         I    S F+ Y  KY   N        +   +  +V  ++      
Sbjct: 181 TSFILNGEVFPTVMIETKSSGFFDYTAKYDD-NGAEENVVYLKEQLQSQVAEISKKIWDL 239

Query: 238 IGCRGISRSDFLFDPLSRKV-FWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           + CR  SR D +   +S  + + LE+N  PG+TP S+ P+ A   G  F ELL
Sbjct: 240 LYCRSYSRVDMI---ISNGIPYVLEVNTLPGLTPHSLIPKSAKAKGMEFSELL 289


>gi|299135996|ref|ZP_07029180.1| D-alanine/D-alanine ligase [Acidobacterium sp. MP5ACTX8]
 gi|298602120|gb|EFI58274.1| D-alanine/D-alanine ligase [Acidobacterium sp. MP5ACTX8]
          Length = 372

 Score =  140 bits (352), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 103/354 (29%), Positives = 178/354 (50%), Gaps = 65/354 (18%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI------------------------ 36
           + +L GG S E E+SL S ++   A++   + V ++                        
Sbjct: 8   VGILFGGKSGEHEISLRSARSILKAIDRKKYDVVELGITKEGRWLQSSAAQALLGGESQP 67

Query: 37  --DVDRSVGLVLAHLKP--------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
             D+    GL +A            D+ F VLHG FGEDG +Q + EL +I Y  SG+L 
Sbjct: 68  SEDLSGETGLTIAAAAAEPAAGTGLDVVFPVLHGTFGEDGTIQGLFELADIAYVGSGVLG 127

Query: 87  SALSMDKMRSKQVVSSCGVPVCP--SILVNRFTMDS-------QHLISPPYVIKPLKGGS 137
           S+  MDK   K++  + G+P+ P  ++L + +  D+       +  +  P  +KP   GS
Sbjct: 128 SSAGMDKDAMKRMFFAAGLPMTPHVTLLRSEWRADAKKSTRLIEKTLQYPVFVKPANLGS 187

Query: 138 SLGIIVIKK--DQSIPLDLLQSSSWNHGDQLLIEQYVDG-----IELTCGVMGDASLDVT 190
           S+GI  +K   D ++ +DL  ++S++   +++IEQ V G      EL   V+G+ + + +
Sbjct: 188 SVGISKVKSRADLAVAMDL--AASFDR--KIVIEQGVGGPGVKPRELEVAVLGNDTPEAS 243

Query: 191 EIA--VPKSDFYSYELKYSSLN----STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244
            +   VP  +FY YE KY  LN    S  ++PAK+     K+++ +A  A +A  C G++
Sbjct: 244 VVGEIVPAKEFYDYEAKY-ELNGADESVSIIPAKLTKAEEKKIRAMAIAAFRACDCAGLA 302

Query: 245 RSDFLFDPLSR----KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           R DFL  P S+    ++   EIN  PG T +S++P++   +G ++ +L+  ++E
Sbjct: 303 RVDFLMAPASKGKPAEIVLNEINTLPGFTSISMYPKLWGASGVNYSKLIDRLIE 356


>gi|298252869|ref|ZP_06976663.1| D-alanine-D-alanine ligase [Gardnerella vaginalis 5-1]
 gi|297533233|gb|EFH72117.1| D-alanine-D-alanine ligase [Gardnerella vaginalis 5-1]
          Length = 380

 Score =  140 bits (352), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 87/281 (30%), Positives = 141/281 (50%), Gaps = 37/281 (13%)

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV 105
           L H+  D  F VLHG  GEDG +Q +LE++++PY   G+LASA  MDK  +KQ+  + G+
Sbjct: 101 LGHI--DAVFPVLHGPNGEDGTLQGLLEMMQVPYVGCGVLASAACMDKYYAKQLFKAAGI 158

Query: 106 PVCPSILV----------NRFTMDSQHLISP--------PYVIKPLKGGSSLGIIVIKKD 147
            V P I +          NRF   ++ +++         P  +KP + GSS G+  ++  
Sbjct: 159 NVAPGIALDARKFASDAKNRFDAYAEEILAQVEAAKLEYPLFVKPSRAGSSFGVTKVESR 218

Query: 148 QSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM-------------GDASLDVTEIAV 194
            +  L      +  H  ++L+EQ +D  E+ C V+             G+  LD  E   
Sbjct: 219 DAKALAEAIFEASEHDWRVLVEQGIDAREIECAVLAARDGEEPKASWPGEVVLDKREAG- 277

Query: 195 PKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
            +  FY ++ KY    ++HV +PA +P +  + V++ A  A +A   RG+SR D      
Sbjct: 278 -EDQFYDFDSKYMDSAASHVEVPANLPAETLERVRKTALAAFKAADGRGLSRVDSFVTKD 336

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            R V   EIN  PG TP+S++P+     G S+ +L+  ++E
Sbjct: 337 GR-VILNEINTMPGFTPISMYPKAWEATGISYSDLITKLIE 376


>gi|225028154|ref|ZP_03717346.1| hypothetical protein EUBHAL_02426 [Eubacterium hallii DSM 3353]
 gi|224954466|gb|EEG35675.1| hypothetical protein EUBHAL_02426 [Eubacterium hallii DSM 3353]
          Length = 353

 Score =  139 bits (351), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 106/342 (30%), Positives = 165/342 (48%), Gaps = 50/342 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--DRSVGLV--LAHLKP----- 51
           + VLMGG SSE +VSL S K     ++   + V  + +  D    LV  L HL+      
Sbjct: 6   IVVLMGGKSSEHDVSLVSAKTVIENIDKDLYNVIMVGITKDGQWKLVDRLDHLEDGSWVN 65

Query: 52  -----------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
                                        D+ F VLHG  GEDG VQ +LEL  IPY   
Sbjct: 66  SKTSAYICPDTGRKELLLERDGKVDRISIDVVFPVLHGMNGEDGTVQGLLELAAIPYVGC 125

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT---MDS-----QHLISPPYVIKPLK 134
           G+LASA SMDK  +K VV S GV     + V R     MD      +  +  P  +KP K
Sbjct: 126 GVLASACSMDKFYTKIVVDSIGVRQAKFVGVRRHELTHMDEVVARVEAGVPYPVFVKPSK 185

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA- 193
            GSS G+   +  + + +D L  ++  H  ++L+E+ + G E+ CGV+G      + +  
Sbjct: 186 AGSSQGVSKAENREEL-IDALNLAA-KHDSKILVEETIVGREIECGVLGMNEPKASGVGE 243

Query: 194 -VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            +   +FYSY+ KY++  S  V+  ++P    +E+++ A    +A+ C G+SR DF    
Sbjct: 244 VLSAEEFYSYDAKYNNEESRTVVDPELPEGKAEEIRKDAVAIFKALDCSGLSRVDFFLTK 303

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            + +V + EIN  PG T +S++P +    G S + L+  +++
Sbjct: 304 DTNEVVFNEINTLPGFTAISMYPMLWEARGLSKKALVQKLID 345


>gi|182435714|ref|YP_001823433.1| D-alanyl-alanine synthetase A [Streptomyces griseus subsp. griseus
           NBRC 13350]
 gi|326776339|ref|ZP_08235604.1| D-alanine--D-alanine ligase [Streptomyces cf. griseus XylebKG-1]
 gi|229486019|sp|B1VYZ5|DDL_STRGG RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|178464230|dbj|BAG18750.1| putative D-alanine-D-alanine ligase [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|326656672|gb|EGE41518.1| D-alanine--D-alanine ligase [Streptomyces cf. griseus XylebKG-1]
          Length = 391

 Score =  139 bits (351), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 92/262 (35%), Positives = 134/262 (51%), Gaps = 21/262 (8%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+ F VLHG +GEDG +Q +LEL  +PY  +G+LASA+  DK   K+V  S G+PV P  
Sbjct: 126 DVVFPVLHGPYGEDGTLQGLLELSGVPYVGAGVLASAVGQDKEYMKRVFLSFGLPVGPYE 185

Query: 112 LVNRFTMDSQHLISP------------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
           +V     D+    +             P  IKP +GGSS+GI   K D    LD     +
Sbjct: 186 VVRPREWDNDPAAARERIVDFAGEHGWPLFIKPARGGSSMGI--TKVDSVEGLDAAIEEA 243

Query: 160 WNHGDQLLIEQYVDGIELTCGVM-----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHV 214
             H  + L+E  + G E+ CGV+       AS+      V   DFY +E KY   ++  +
Sbjct: 244 RRHDPKFLVESLLRGREIECGVLEFEDGPRASVPAEIPPVTSHDFYDFEAKYID-SAAGL 302

Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274
           +PA +  +   EV+RLA  A  A+ C G+ R+DF        V   EIN  PG TP+S++
Sbjct: 303 VPAPLTEEQTAEVRRLAVAAFDAVSCEGLVRADFFLTEDGTFVI-NEINTLPGFTPISMY 361

Query: 275 PEMAAYAGYSFRELLLWMVEDA 296
           P M   +G  + EL+  +++ A
Sbjct: 362 PRMWQESGVDYPELVDRLIQAA 383


>gi|29349121|ref|NP_812624.1| D-alanyl-alanine synthetase A [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|253571284|ref|ZP_04848691.1| D-alanyl-alanine synthetase A [Bacteroides sp. 1_1_6]
 gi|298386818|ref|ZP_06996373.1| D-alanine--D-alanine ligase [Bacteroides sp. 1_1_14]
 gi|39930883|sp|Q8A1F3|DDL_BACTN RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|29341028|gb|AAO78818.1| D-alanine--D-alanine ligase [Bacteroides thetaiotaomicron VPI-5482]
 gi|251839237|gb|EES67321.1| D-alanyl-alanine synthetase A [Bacteroides sp. 1_1_6]
 gi|298260492|gb|EFI03361.1| D-alanine--D-alanine ligase [Bacteroides sp. 1_1_14]
          Length = 324

 Score =  139 bits (351), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 92/323 (28%), Positives = 160/323 (49%), Gaps = 33/323 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-----------------VDR--- 40
           +A++ GG +SE  VSL S +   S ++   + +  ++                 VDR   
Sbjct: 5   IAIVAGGDTSEFHVSLRSAQGIYSFIDKEKYTLYIVEMQGTRWEVQLPDGAKAPVDRNDF 64

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           S  L    ++ D A+  +HG  GEDG +Q   +++ IPY+  G+LA+A++ DK    Q +
Sbjct: 65  SFMLGTEKIRFDFAYITIHGTPGEDGRLQGYFDMMHIPYSCCGVLAAAITYDKFTCNQYL 124

Query: 101 SSCGVPVCPSILVNRFTM----DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
            + GV +  S+L+ +       D    I  P  IKP  GGSS G+  +K  + I   +++
Sbjct: 125 KAFGVRIAESLLLRQGQSVSDEDVMEKIGLPCFIKPSLGGSSFGVTKVKTKEQIQPAIVK 184

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV----TEIAVPKSDFYSYELKYSSLNST 212
             ++    ++L+E +++G ELTCG        V    TE+ V  ++F+ Y+ KY+     
Sbjct: 185 --AFEEAQEVLVEAFMEGTELTCGCYKTKDKTVIFPPTEV-VTHNEFFDYDAKYNG-QVD 240

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
            + PA+I  ++   VQ L    +  +GC GI R D++      K+  LE+N  PGMT  S
Sbjct: 241 EITPARISDELTNRVQMLTSAIYDILGCSGIIRVDYIVTA-GEKINLLEVNTTPGMTTTS 299

Query: 273 IFPEMAAYAGYSFRELLLWMVED 295
             P+    AG   ++++  ++E+
Sbjct: 300 FIPQQVRAAGLDIKDVMTDIIEN 322


>gi|322833759|ref|YP_004213786.1| D-alanine/D-alanine ligase [Rahnella sp. Y9602]
 gi|321168960|gb|ADW74659.1| D-alanine/D-alanine ligase [Rahnella sp. Y9602]
          Length = 365

 Score =  139 bits (351), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 97/347 (27%), Positives = 167/347 (48%), Gaps = 57/347 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS------------------- 41
           + ++ GG S+E EVSL S K    A++   F V+ + +D+                    
Sbjct: 6   VGIIFGGKSAEHEVSLQSAKNIVDAIDKQRFDVTLLGIDKKGEWHINDASNYLINAENPS 65

Query: 42  ----------VGLVLAHLKP--------------DLAFNVLHGNFGEDGLVQAILELLEI 77
                     V L+    +               D+ F ++HG  GEDG +Q +L +  I
Sbjct: 66  LIALNRSNNQVALIPGQTENQLIETHSASALSQVDVIFPIVHGTLGEDGSLQGLLRMANI 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR-------FTMDSQHLISPPYVI 130
            +  SG+L SA+SMDK  +K+++   G+ V P + + R       F   SQ L   P  I
Sbjct: 126 AFVGSGVLGSAVSMDKDVTKRLLRDAGLAVAPFVCLTRANRQKNTFASVSQQL-GLPLFI 184

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD--ASLD 188
           KP   GSS+G+  +  +      L ++ S++H  ++L+E  + G E+ C V+G+      
Sbjct: 185 KPANQGSSVGVSKVSDEDGYQRALDKAFSFDH--KVLVESAIKGREIECAVLGNDHPQAS 242

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           V    +   +FYSY+ KY + +   + +PA +P + +  ++ +A  A Q + CRG++R D
Sbjct: 243 VCGEVILHDEFYSYDTKYINESGASIAVPADLPRETHDRIRAIALQAFQVLECRGMARVD 302

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            +F      V   EIN  PG T +S++P++ A +G S+ EL+  ++E
Sbjct: 303 -VFLTEQGDVVINEINTLPGFTNISMYPKLWAASGLSYSELITRLIE 348


>gi|332160674|ref|YP_004297251.1| D-alanine--D-alanine ligase A [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|325664904|gb|ADZ41548.1| D-alanine--D-alanine ligase A [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
          Length = 366

 Score =  139 bits (351), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 101/354 (28%), Positives = 171/354 (48%), Gaps = 71/354 (20%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------------------- 40
           + V+ GG S+E EVSL S K    A++   F V+ + +D+                    
Sbjct: 6   VGVIFGGKSAEHEVSLQSAKNIVDAIDKEKFDVTLLGIDKQGKWHVNDASNYLLNAENPA 65

Query: 41  ---------SVGLV----------------LAHLKPDLAFNVLHGNFGEDGLVQAILELL 75
                    +V L+                LA L  D+ F ++HG  GEDG +Q +L + 
Sbjct: 66  LISLNHSNKNVALIPGQEHQQLIATDNASALAQL--DVIFPIVHGTLGEDGSLQGLLRMA 123

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYV 129
            IP+  SG+L SA+SMDK  +K+++   G+ + P I + R   D+         +  P  
Sbjct: 124 NIPFVGSGVLGSAVSMDKDITKRLLRDAGLNIAPFITLTRANKDNYRFEQVTAKLGLPLF 183

Query: 130 IKPLKGGSSLGIIVIKK----DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD- 184
           IKP   GSS+G+  ++     +Q++ L      +++   ++L+E  + G E+ C VMG+ 
Sbjct: 184 IKPANQGSSVGVSKVRNAYEYEQAVAL------AFDFDHKVLVESAIVGREIECAVMGND 237

Query: 185 ---ASLDVTEIAVPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
              ASL   E+ +   +FYSY+ KY +   +  ++PA I   +   ++ +A  A +A+ C
Sbjct: 238 NPQASL-CGEVVI-SDEFYSYDTKYINETGAKVIIPASIGSAVSDNIRAVALAAFRALEC 295

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           RG++R D    P +R V   EIN  PG T +S++P++    G    EL+  ++E
Sbjct: 296 RGMARVDVFLTPDNR-VIINEINTLPGFTNISMYPKLWRATGVGSTELITTLIE 348


>gi|305664422|ref|YP_003860709.1| D-alanylalanine synthetase [Maribacter sp. HTCC2170]
 gi|88708439|gb|EAR00675.1| D-alanylalanine synthetase [Maribacter sp. HTCC2170]
          Length = 327

 Score =  139 bits (351), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 106/324 (32%), Positives = 161/324 (49%), Gaps = 36/324 (11%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40
           +A++MGG SSE ++SL SG      L+   ++  +I +                    D 
Sbjct: 5   VAIIMGGYSSEYKISLKSGNVVHDYLDKEKYERYRIHIFKQKWVYVDDVNAEHEVNKDDF 64

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           S+ +    +  D  FN +HG  GEDGL+QA  ELL IP T  G   +AL+ +K     V+
Sbjct: 65  SIQVNNEKIVFDCVFNAIHGTPGEDGLMQAYFELLGIPQTSCGYYQAALTFNKRDLLSVL 124

Query: 101 SSCGVPVCPSILVNRFTMDSQHLISP----PYVIKPLKGGSSLGI-IVIKKDQSIPLDLL 155
              G+   PS  +N     ++  I      P  +K  K GSS GI  V +KD+   L   
Sbjct: 125 KPYGIKSAPSYYLNLGDEINEDAIIEQVGLPCFVKANKAGSSFGISKVNEKDR---LKEA 181

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVM---GDAS-LDVTEIAVPKSDFYSYELKYSSLNS 211
              ++   D+++IE ++DG E++ GV+   G+   L +TEI V ++DF+ YE KY    S
Sbjct: 182 IEFAYKEDDEIIIEGFLDGTEVSVGVIKYKGETKVLPITEI-VTENDFFDYEAKYEG-KS 239

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271
             + PA+I     K V + A  A+  +   G SRS+F+F  +  + F LE+N  PG+T  
Sbjct: 240 QEITPARISSRQEKNVIQAAKRAYDVLKMTGFSRSEFIF--IGDEPFMLEMNTTPGLTTE 297

Query: 272 SIFPEMAAYAGYSFRELLLWMVED 295
           SI P+ A  AG S  EL    +E+
Sbjct: 298 SILPQQAGEAGISLSELFGGAIEE 321


>gi|30020677|ref|NP_832308.1| D-alanine--D-alanine ligase [Bacillus cereus ATCC 14579]
 gi|39931057|sp|Q81D33|DDLA_BACCR RecName: Full=D-alanine--D-alanine ligase A; AltName:
           Full=D-Ala-D-Ala ligase A; AltName: Full=D-alanylalanine
           synthetase A
 gi|29896229|gb|AAP09509.1| D-alanine--D-alanine ligase [Bacillus cereus ATCC 14579]
          Length = 301

 Score =  139 bits (351), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 92/303 (30%), Positives = 163/303 (53%), Gaps = 13/303 (4%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62
           +L  G +SE++VS+ +G    + L+   +++  I ++  + L+      D A   LHG +
Sbjct: 2   LLWAGYASEKQVSIMTGNEMIAHLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHGKY 61

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---FTMD 119
           GEDG VQ  LE L IPY+ S +L+S++ MDK  SK+++   GV     I + +     +D
Sbjct: 62  GEDGTVQGTLESLGIPYSGSNMLSSSICMDKNISKKILRYEGVETPDWIELTKMEDLNLD 121

Query: 120 SQHLISPPYVIKPLKGGSSLGI-IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
               +  P V+KP  GGSS+G+ IV  K++ I + L     W+   +++IE+Y+ G E+T
Sbjct: 122 ELDKLGFPLVVKPNSGGSSVGVKIVYNKNELISM-LETVFEWDS--EVVIEKYIKGDEIT 178

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           C ++    L +  I    ++F+ Y  KY   ++   +  ++P  I + V + +   ++A+
Sbjct: 179 CSILDGKQLPIVSIR-HAAEFFDYNAKYDDTSTVEEV-IELPAQIKERVNKASLTCYKAL 236

Query: 239 GCRGISRSDFLF-DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
            C   +R D +  D +    + +EIN  PGMT  S+ P+ A  AG S+ +LL  ++E + 
Sbjct: 237 KCSVYARVDMMVKDGIP---YVMEINTLPGMTQSSLLPKSAEAAGISYSKLLDMIIETSL 293

Query: 298 CLR 300
            +R
Sbjct: 294 KVR 296


>gi|309804050|ref|ZP_07698131.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus iners
           LactinV 11V1-d]
 gi|308163818|gb|EFO66084.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus iners
           LactinV 11V1-d]
          Length = 361

 Score =  139 bits (351), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 101/343 (29%), Positives = 168/343 (48%), Gaps = 50/343 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALE------------DAGFKVSQID----------- 37
           + ++ GG SSE EVS+ SG+    A++            + GF  S  D           
Sbjct: 7   VGLIFGGNSSEYEVSIISGRNIYKAIDKEKYDVYPMWITNTGFLASDADSRKVLEDPTYQ 66

Query: 38  ------VDRSVGLVLAHLKP--DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
                 V     ++    +P  D+ F ++HGN GEDG +Q +L +L+ P+    +LA+A+
Sbjct: 67  IENPHTVTNISNVIELSNRPEIDVFFPIVHGNLGEDGCLQGLLRILDKPFVGDDVLAAAI 126

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYV---------IKPLKGGSS 138
           +MDK  +K +    GVPV   I + RF  D      +S  YV         +KP   GSS
Sbjct: 127 TMDKELNKIMAQRAGVPVAKWISIKRFEYDDAKNEKLSYDYVSQQLGTDLFVKPSNQGSS 186

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVP 195
           +GI  +         L +  ++ + D++L+E+ + G E+   V+G+    V+   +I   
Sbjct: 187 VGISHVTSASDYKAALAE--AFKYDDKVLVEETIKGTEVETAVLGNDDAIVSGVGQITNA 244

Query: 196 KSDFYSYELKYSSLNSTHVL--PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
           +  +YSYE KY+  NST  L  PA +P +I + V+R A   + A  C G++R D +    
Sbjct: 245 QGSWYSYENKYND-NSTSKLQIPAALPSEIIETVRRQALKVYHATECSGLARVDSMLTTD 303

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             KV + E+N  PG T +S++P++   AG  + EL+  +++ A
Sbjct: 304 GHKVIFNELNALPGFTNISMYPKLFEEAGIPYAELITKLLDYA 346


>gi|302554392|ref|ZP_07306734.1| D-alanyl-alanine synthetase A [Streptomyces viridochromogenes DSM
           40736]
 gi|302472010|gb|EFL35103.1| D-alanyl-alanine synthetase A [Streptomyces viridochromogenes DSM
           40736]
          Length = 385

 Score =  139 bits (351), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 94/263 (35%), Positives = 139/263 (52%), Gaps = 23/263 (8%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+ F VLHG +GEDG +Q +LEL  +PY  SG+LASA+  DK   K+V +S G+ V P +
Sbjct: 120 DVVFPVLHGPYGEDGTLQGLLELSGVPYVGSGVLASAVGQDKDYMKRVFTSFGLKVGPYL 179

Query: 112 LV--NRFTMDSQHLISP----------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
           +V    +  D Q               P  +KP + GSS+GI   K D    LD   + +
Sbjct: 180 VVRPREWRQDEQAARKRIVDFAGDHGWPLFVKPARAGSSIGI--TKVDDLAGLDEAIAEA 237

Query: 160 WNHGDQLLIEQYVDGIELTCGVM--GDASLDVTEIAVPKSD---FYSYELKYSSLNST-H 213
             H  ++L+E  + G E+ CGV+   D         +P  D   +Y +E KY  ++ST  
Sbjct: 238 QRHDPKILVEAALRGREIECGVLEFEDGPRASVPAEIPPPDAHAYYDFEAKY--IDSTPG 295

Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273
           ++PA +  +   EVQRLA  A +A  C G+ R+DF        V   EIN  PG TP+S+
Sbjct: 296 IVPAPLTPEETAEVQRLAVEAFEAASCEGLVRADFFLTEDGEFVI-NEINTMPGFTPISM 354

Query: 274 FPEMAAYAGYSFRELLLWMVEDA 296
           +P+M   +G S+ EL+  +V+ A
Sbjct: 355 YPQMWQASGVSYPELVDRLVQAA 377


>gi|297584141|ref|YP_003699921.1| D-alanine/D-alanine ligase [Bacillus selenitireducens MLS10]
 gi|297142598|gb|ADH99355.1| D-alanine/D-alanine ligase [Bacillus selenitireducens MLS10]
          Length = 359

 Score =  139 bits (351), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 100/343 (29%), Positives = 179/343 (52%), Gaps = 55/343 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASAL----------------------------EDA--- 29
           + ++ GG S+E +VSL + KA  +AL                            EDA   
Sbjct: 5   LGLVYGGKSAEHQVSLQTAKAVINALDFEQYEVHPIYITVTGRWIRGQELTSTIEDASLL 64

Query: 30  ----GFKVSQIDVDRSV-GLVLAHLKP-DLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
               G ++S   +++SV     +  +P D+ F +LHG  GEDG +Q +LE+L+IPY  +G
Sbjct: 65  KFEEGKEISPTSLNQSVFPSYESEERPFDIIFPLLHGPNGEDGTIQGLLEMLDIPYVGNG 124

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNR--FTMDS----QH---LISPPYVIKPLK 134
           +LAS+  MDK+  K + +  G+     +   R  +  D+    QH   ++  P  +KP  
Sbjct: 125 VLASSAGMDKVMMKNIYAHAGIRQPAYVWYTRPNYEKDTEAACQHVEEVLGFPCFVKPAN 184

Query: 135 GGSSLGIIVIKKDQSIPLDLLQS--SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192
            GSS+GI      Q    +L+Q+  +++++  ++++E+ +DG E+   V+G+   + + +
Sbjct: 185 LGSSVGISKASNRQ----ELVQAFQTAFDYDRKVIVEEGIDGREVEIAVLGNDEPECSVV 240

Query: 193 A--VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
              VPK+DFY Y+ KY   ++  ++PA+I  + Y+ ++ +A  + +A+ C G+ R+DF  
Sbjct: 241 GEIVPKADFYDYKAKYEDNSTGLIIPAEITDEEYETIKAVAVQSFKALDCSGLVRADFFL 300

Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
              S  +   E+N  PG TPVS+FP +   +G S+  L+  M+
Sbjct: 301 TKDS-TILMNEVNTMPGFTPVSMFPLLWKESGISYPALIEKMI 342


>gi|306835963|ref|ZP_07468955.1| D-alanine-D-alanine ligase [Corynebacterium accolens ATCC 49726]
 gi|304568129|gb|EFM43702.1| D-alanine-D-alanine ligase [Corynebacterium accolens ATCC 49726]
          Length = 355

 Score =  139 bits (351), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 103/352 (29%), Positives = 166/352 (47%), Gaps = 60/352 (17%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------------------- 40
           +AVL GG S+E  VS  S  A    L+   F+V  I + R                    
Sbjct: 7   VAVLYGGRSTEHSVSCVSAGAIMKHLDPEKFEVVPIGITREGTWTPGDTEGLEIVDGVMP 66

Query: 41  -----------------------SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEI 77
                                  S G + AH+  D+ F +LHG +GEDG +Q + EL  I
Sbjct: 67  EVKHGTELALSADPTRKGEIRTISDGSLYAHV--DVIFPILHGPYGEDGTMQGLFELSGI 124

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFTMDSQHLISPPYVIKPLK 134
           PY   G+LAS++ MDK  +K+++S+ G+PV P ++V      T + +  +  P   KP +
Sbjct: 125 PYVGPGVLASSVGMDKEFTKKILSAAGLPVAPEVIVQGRTELTAEEKDRLGLPVFAKPAR 184

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG--DASLDVTEI 192
           GGSS+G+  +      P  +    +    D++L+E  + G E+  GV+   D  L  +  
Sbjct: 185 GGSSIGVSKVSDWADFPEAV--RIALEDDDKILVEPEIVGREVEVGVLQYPDGRLIASVP 242

Query: 193 AVPK----SD--FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRS 246
           A+ K    SD  FY +E KY     T  +PA  P ++  +++ +A  A +A+ C G+SR 
Sbjct: 243 ALLKGIDDSDEGFYGFETKYLDNVVTAQIPAPFPEELTAQLRDMAIRAFKALNCTGLSRV 302

Query: 247 DFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           DF        ++  E+N  PG TP+S++P++ A +G  +  LL  ++  A  
Sbjct: 303 DFFV--TEEGLYINEVNTLPGFTPISMYPQVLAASGVDYPTLLEVLIASAEA 352


>gi|15420572|gb|AAK97387.1|AF363615_1 D-alanine:D-alanine ligase 2 [Enterococcus gallinarum]
          Length = 343

 Score =  139 bits (351), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 99/340 (29%), Positives = 160/340 (47%), Gaps = 53/340 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKV--------------------------- 33
           + VL GG+S ER+VSLSSG   A ALE+ G +                            
Sbjct: 3   IVVLAGGLSHERDVSLSSGGQIAMALEERGHRALLLDLYQGNNEKTFESAYSIQKQEENP 62

Query: 34  -------SQIDVDRSV------------GLVLAHLKPDLAFNVLHGNFGEDGLVQAILEL 74
                  ++ D+++ +             +V   L  D  F  LHG  GE+G +QA  ++
Sbjct: 63  YDYFVVENEPDIEKLIQKNSNQKNLIGKNVVELCLNADFCFIALHGGIGENGKLQAFFDI 122

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLK 134
             I Y+ S    S L+MDK  +KQ++    +P     L   +    +   S P V+KP+ 
Sbjct: 123 YGIRYSGSHYKGSLLAMDKDIAKQLMKLNDIPTPKWQL---WEQGQEVYYSTPCVVKPID 179

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194
            GSS+G+ +++  +     L ++  +N   +++IEQ ++G E + GV+GD  L   EI +
Sbjct: 180 NGSSIGVEIVENKEQFFKALKKAEKYN--SKVMIEQKIEGREFSVGVLGDNVLPAIEI-I 236

Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
           P+  FY+YE KY    +  + PA I  D+   +  +  L ++ +G    SR D++     
Sbjct: 237 PQQGFYNYENKYQKGATEEITPADISSDLATRLSEMTVLVNKVLGLSIYSRVDYIVTK-E 295

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             ++ +E N  PGMTP S+ P+ A   G SF EL   +VE
Sbjct: 296 LDIYCIEANSLPGMTPTSLLPQEAEAIGISFSELCETIVE 335


>gi|325660968|ref|ZP_08149595.1| hypothetical protein HMPREF0490_00327 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325472475|gb|EGC75686.1| hypothetical protein HMPREF0490_00327 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 352

 Score =  139 bits (351), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 95/342 (27%), Positives = 166/342 (48%), Gaps = 51/342 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGF--------------KVSQIDVDRS----- 41
           +AV+ GG SSE EVS  S     S ++   +              KV   +  R+     
Sbjct: 8   VAVIFGGQSSEHEVSCKSAVTVISHIDRTKYEPVLIGITKEGCWLKVEDTEAIRNDTWRE 67

Query: 42  ------------------VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                             +G  +  ++ D+ F VLHG +GEDG +Q + EL +IPY   G
Sbjct: 68  NGKRAILSPDAGEHGILVLGDTVEKIQVDVIFPVLHGMYGEDGTIQGLFELAKIPYVGCG 127

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--------QHLISPPYVIKPLKG 135
           +LASA+SMDK+ +K +V   G+     + ++ + ++         + ++  P  +KP K 
Sbjct: 128 VLASAVSMDKLYTKIIVDRLGIRQAKFVGIHAYELEEIDKALDKVEEVLPYPVFVKPSKA 187

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL---DVTEI 192
           GSS G+   K  + +   LL+++   H  ++L+E+ + G E+ C V+G  ++   DV EI
Sbjct: 188 GSSQGVNQAKDREELQAALLEAA--KHDTKILVEETIKGREIECAVLGGKNVKASDVGEI 245

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
               + FY+YE KY++ +S      ++P    ++V+  A    +A+   G+SR DF  + 
Sbjct: 246 KAADT-FYTYEAKYNNPDSKTDTHPELPEGALEKVREDAVAIFKAVDGFGLSRVDFFLEH 304

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            + +V + EIN  PG T +S++P +    G     L+  ++E
Sbjct: 305 GTNEVIFNEINTLPGFTNISMYPMLWREKGVDTTALVTELIE 346


>gi|25027987|ref|NP_738041.1| D-alanyl-alanine synthetase A [Corynebacterium efficiens YS-314]
 gi|39930900|sp|Q8FPQ9|DDL_COREF RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|23493270|dbj|BAC18241.1| putative D-alanine--D-alanine ligase [Corynebacterium efficiens
           YS-314]
          Length = 361

 Score =  139 bits (351), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 86/260 (33%), Positives = 141/260 (54%), Gaps = 23/260 (8%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+ F VLHG FGEDG +Q +  L +IP    G+L+SA  MDK  +K+++++ G+P+   +
Sbjct: 104 DVIFPVLHGRFGEDGTIQGMFALSDIPVVGPGVLSSAAGMDKEFTKKLMAAEGLPIGREV 163

Query: 112 LVN---RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP--LDLLQSSSWNHGDQL 166
           ++      T   + L+  P  +KP +GGSS+GI  + + + +P  +DL +     H +++
Sbjct: 164 ILRDRAELTDAEKKLLGLPVFVKPARGGSSIGISKVSRWEDLPAAVDLAR----QHDEKV 219

Query: 167 LIEQYVDGIELTCGVMG----------DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216
           ++E  + G E+ CGV+            A L  TE    +  FY ++ KY     T  +P
Sbjct: 220 IVESEIVGPEVECGVLQYPDGRIVASLPAMLRGTEDG--EGGFYDFDTKYLDNVVTAEIP 277

Query: 217 AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPE 276
           A +  +I + VQ LA    QA+ C G++R DF     +      EIN  PG TP+S++P+
Sbjct: 278 APLDEEIIELVQSLAVETFQALACEGLARVDFFV--TANGPVLNEINTMPGFTPISMYPQ 335

Query: 277 MAAYAGYSFRELLLWMVEDA 296
           M A +G  + ELL  +V+ A
Sbjct: 336 MFAASGVGYEELLDVLVQQA 355


>gi|331085322|ref|ZP_08334408.1| hypothetical protein HMPREF0987_00711 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330408105|gb|EGG87595.1| hypothetical protein HMPREF0987_00711 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 352

 Score =  139 bits (351), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 95/342 (27%), Positives = 166/342 (48%), Gaps = 51/342 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGF--------------KVSQIDVDRS----- 41
           +AV+ GG SSE EVS  S     S ++   +              KV   +  R+     
Sbjct: 8   VAVIFGGQSSEHEVSCKSAVTVISHIDRTKYEPVLIGITKEGCWLKVEDTEAIRNDTWRE 67

Query: 42  ------------------VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                             +G  +  ++ D+ F VLHG +GEDG +Q + EL +IPY   G
Sbjct: 68  NGKRAILSPDAGEHGILVLGDTVEKIQVDVIFPVLHGMYGEDGTIQGLFELAKIPYVGCG 127

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--------QHLISPPYVIKPLKG 135
           +LASA+SMDK+ +K +V   G+     + ++ + ++         + ++  P  +KP K 
Sbjct: 128 VLASAVSMDKLYTKIIVDRLGIRQAKFVGIHAYELEEIDKVLDKVEEVLPYPVFVKPSKA 187

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL---DVTEI 192
           GSS G+   K  + +   LL+++   H  ++L+E+ + G E+ C V+G  ++   DV EI
Sbjct: 188 GSSQGVNQAKDREELQAALLEAA--KHDTKILVEETIKGREIECAVLGGKNVKASDVGEI 245

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
               + FY+YE KY++ +S      ++P    ++V+  A    +A+   G+SR DF  + 
Sbjct: 246 KAADT-FYTYEAKYNNPDSKTDTHPELPEGALEKVREDAVAIFKAVDGFGLSRVDFFLEH 304

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            + +V + EIN  PG T +S++P +    G     L+  ++E
Sbjct: 305 GTNEVIFNEINTLPGFTNISMYPMLWREKGIDTTALVTELIE 346


>gi|86742290|ref|YP_482690.1| D-alanyl-alanine synthetase A [Frankia sp. CcI3]
 gi|123764520|sp|Q2J6Y1|DDL_FRASC RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|86569152|gb|ABD12961.1| D-alanine--D-alanine ligase [Frankia sp. CcI3]
          Length = 383

 Score =  139 bits (351), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 89/264 (33%), Positives = 141/264 (53%), Gaps = 19/264 (7%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+ F +LHG FGEDG VQ +LE+  +PY  SG+ ASA +MDK   K ++ + G+PV    
Sbjct: 124 DVVFPLLHGPFGEDGTVQGLLEMAGLPYVGSGVFASAAAMDKQHMKALLRAAGLPVGSYA 183

Query: 112 LV---NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168
           ++   +  T   Q  +  P  +KP +GGSS+GI  ++      LD    ++     ++L+
Sbjct: 184 VLRAGDTLTGADQERLGLPVFVKPARGGSSIGISRVEAWAD--LDTAIKAARASDPKVLV 241

Query: 169 EQYVDGIELTCGVMGDASLDVTEIAVP-------KSDFYSYELKYSSLNSTHV-LPAKIP 220
           E  + G E+ CGV+G       E +VP        + FY +E KY S ++TH  +PA + 
Sbjct: 242 ESAIVGREIECGVLGILDGPGAEASVPAEITVTSSAGFYDFEAKYMS-DATHFDVPANLS 300

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280
             + +EV+  A  A +A+ C G++R D +F      V   E+N  PG TP S+FP M   
Sbjct: 301 HAVREEVRGAAIAAFEALDCAGLARVD-MFVTADDHVIINEVNTMPGFTPTSMFPRMWEA 359

Query: 281 AGYSFRELLLWMV----EDASCLR 300
           +G ++ +L+  +V     D + LR
Sbjct: 360 SGVTYPQLVDRLVRLALRDGAGLR 383


>gi|220906629|ref|YP_002481940.1| D-alanyl-alanine synthetase A [Cyanothece sp. PCC 7425]
 gi|219863240|gb|ACL43579.1| D-alanine/D-alanine ligase [Cyanothece sp. PCC 7425]
          Length = 349

 Score =  139 bits (351), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 86/261 (32%), Positives = 144/261 (55%), Gaps = 20/261 (7%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+ F +LHG  GEDG VQ +L+L++ P+  SG+LASA  MDK+  K + ++ G+P    +
Sbjct: 90  DVWFPILHGPNGEDGTVQGLLKLMQRPWVGSGVLASAAGMDKIMMKTIFAAAGLPQVKYL 149

Query: 112 LVNRFTMDSQHLISP------------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
            VNR  + S   +              P  +KP   GSS+GI  ++    +   L  ++S
Sbjct: 150 AVNRSQLWSDPCVYTKLCDRIDTTLGYPCFVKPANLGSSVGITKVRNRPQLETALENAAS 209

Query: 160 WNHGDQLLIEQYVDGIELTCGVMGD----ASLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215
           ++   +L++E  V   E+ C V+G+    AS+ V EI    SDFY YE KY+   ++ ++
Sbjct: 210 YDR--RLVVETGVIAREVECSVLGNDHPRASV-VGEITY-SSDFYDYETKYTDGRASLII 265

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275
           PA +P  I  ++Q +A  A  AI   G++R DF +   + ++   EIN  PG T  S++P
Sbjct: 266 PADLPPAIVTQIQEMALTAFTAIDAAGLARVDFFYLESTGEILINEINTLPGFTAFSMYP 325

Query: 276 EMAAYAGYSFRELLLWMVEDA 296
           ++ A +G +F +L+  +++ A
Sbjct: 326 QLWAASGVTFPDLVDQLIQFA 346


>gi|84498310|ref|ZP_00997107.1| D-alanylalanine synthetase [Janibacter sp. HTCC2649]
 gi|84381810|gb|EAP97693.1| D-alanylalanine synthetase [Janibacter sp. HTCC2649]
          Length = 382

 Score =  139 bits (351), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 101/351 (28%), Positives = 163/351 (46%), Gaps = 65/351 (18%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +A++ GG SSE  VS ++  +  SAL+   + V  I + +    VLA   P         
Sbjct: 20  VALVFGGRSSEHAVSCATAASVMSALDPERYDVIPIGIAKDGSWVLAPNDPEPLRLAPGH 79

Query: 52  -------------------------------------DLAFNVLHGNFGEDGLVQAILEL 74
                                                D+ F +LHG FGEDG +Q +L+L
Sbjct: 80  IPEVDASGPSVLVPTSATARHLIVHEPGAAPRELNEVDVVFPLLHGPFGEDGTIQGMLDL 139

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-SILVNR-------FTMDSQHLISP 126
            ++ Y  SG+ ASA+ MDK   K V ++ G+PV P +++ +R         +D+   +  
Sbjct: 140 ADVRYVGSGVTASAVMMDKHMMKVVFAAAGLPVGPYTVITDREWLRDPEAALDAVGALEF 199

Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186
           P  +KP + GSS+GI   K D    L     ++  H  ++++EQ + G E+ CGV+    
Sbjct: 200 PVFVKPARAGSSMGI--SKVDSPDGLRAAVEAAREHDPKVIVEQGIVGREIECGVLDGHG 257

Query: 187 LDVTE-------IAVPKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAI 238
            D          I V    FY +E KY + +   +  PA +  DI +++ ++A +A  A 
Sbjct: 258 TDAPRTSPLGECIVVKGHAFYDFEAKYLADDDIRLEAPADVAPDIAEQIAQMAVIAFTAA 317

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           GC G++R DF     +  +   EIN  PG TP S++P M A AG ++ +L+
Sbjct: 318 GCEGLARCDFFLTD-TGDLLINEINTMPGFTPSSMYPRMWAAAGLTYPQLI 367


>gi|257457275|ref|ZP_05622446.1| D-alanine--D-alanine ligase [Treponema vincentii ATCC 35580]
 gi|257445197|gb|EEV20269.1| D-alanine--D-alanine ligase [Treponema vincentii ATCC 35580]
          Length = 367

 Score =  139 bits (351), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 78/258 (30%), Positives = 140/258 (54%), Gaps = 18/258 (6%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+ F VLHG+FGEDG +Q + E+ ++PY   G+LAS+ +MDK +SK +     +P+ P +
Sbjct: 96  DVVFPVLHGSFGEDGTIQGLFEMADLPYVGGGVLASSAAMDKEKSKIIWQHEHLPIVPFL 155

Query: 112 LVNRFTMD-----------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160
            V +F  D           ++  +  P  +KP + GSS+G         +   + ++  W
Sbjct: 156 CVRKFQWDNPKEREGFILHAEKELEYPLFVKPCRVGSSVGAGKASNRTELLQKMEEAFLW 215

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDV---TEIAVPKSDFYSYELKYSSLNSTHV-LP 216
           +   ++LIE  +   E+ C V G+    V    EI +P  +FY Y+ KY   +   + +P
Sbjct: 216 D--SKVLIEACIAAREIECSVTGNDEYVVYTPGEI-IPSHEFYDYDAKYIDPDGAQLKIP 272

Query: 217 AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPE 276
           A I  +  +E++ +A  A++A+   G++R DF  D  ++ ++  E+N  PG T +S+FP+
Sbjct: 273 ADIDDEQRREIRSIAGKAYRALDLTGLARVDFFIDKKTKTIYLNEVNTIPGFTAISMFPK 332

Query: 277 MAAYAGYSFRELLLWMVE 294
           M   +G  +REL++ + +
Sbjct: 333 MCEASGMPYRELIMHLFD 350


>gi|270260868|ref|ZP_06189141.1| D-alanine--D-alanine ligase A [Serratia odorifera 4Rx13]
 gi|270044352|gb|EFA17443.1| D-alanine--D-alanine ligase A [Serratia odorifera 4Rx13]
          Length = 367

 Score =  139 bits (350), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 101/349 (28%), Positives = 172/349 (49%), Gaps = 61/349 (17%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------------------- 40
           + V+ GG S+E EVSL S K    A++   F V+ + +D+                    
Sbjct: 6   VGVIFGGKSAEHEVSLQSAKNIVDAIDKEKFDVTLLGIDKQGQWHINDASNYLLNAENPA 65

Query: 41  ---------SVGLVLAHLKP--------------DLAFNVLHGNFGEDGLVQAILELLEI 77
                    +V L+    K               D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  LIALNRSNKNVALIPGQEKQQLIEASSAGALGQLDVVFPIVHGTLGEDGSLQGLLRMANM 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR-------FTMDSQHLISPPYVI 130
           P+  +G+L SA+SMDK  +K+++   G+ V P + + R       F   S+ L   P  I
Sbjct: 126 PFVGAGVLGSAVSMDKDVTKRLLRDAGLAVAPFVTLTRTNRGKYGFDQLSERL-GLPLFI 184

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD----AS 186
           KP   GSS+G+  ++        L  + S++H  ++L+E  + G E+ C V+G+    AS
Sbjct: 185 KPANQGSSVGVSKVQDRAGFDAALALAFSFDH--KVLVESAIVGREIECAVLGNDEPQAS 242

Query: 187 LDVTEIAVPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
           L   EI +  + FYSY+ KY +   +  V+PA+I  ++  +++ +A  A +A+ C G++R
Sbjct: 243 L-CGEIVLSDA-FYSYDTKYINEQGAKVVVPAEIAPEVSDKIRDVALKAFRALECFGLAR 300

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            D    P    V   EIN  PG T +S++P++ A +G S+ EL+  ++E
Sbjct: 301 VDVFLTP-DNNVVINEINTLPGFTNISMYPKLWAASGVSYSELITRLIE 348


>gi|15805391|ref|NP_294085.1| D-alanyl-alanine synthetase A [Deinococcus radiodurans R1]
 gi|22095571|sp|Q9RXF1|DDL_DEIRA RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|6458038|gb|AAF09941.1|AE001896_6 D-alanine--D-alanine ligase [Deinococcus radiodurans R1]
          Length = 339

 Score =  139 bits (350), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 99/330 (30%), Positives = 164/330 (49%), Gaps = 41/330 (12%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVS--------------------QIDVDRSV 42
           +L GG S E EVSL S ++  +AL    F V+                    +  V    
Sbjct: 7   LLAGGQSGEHEVSLRSARSVLAALPRDQFDVTPVVISKQGRWLPPTETQKALETGVSSQG 66

Query: 43  GLVLAHLKP-----DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSK 97
           G ++ H        D  F +LHG  GEDG +Q +L L  IP+  SG+L SA+SMDK+ +K
Sbjct: 67  GDLMLHRAAAAEGYDAVFPLLHGPMGEDGTIQGLLTLAGIPFVGSGVLGSAVSMDKVMTK 126

Query: 98  QVVSSCGVP-VCPSILVNRFTMDSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQS 149
           QV+ S G+P V   + V R    +   +         P  +KP   GSS+GI  +   + 
Sbjct: 127 QVLDSAGIPQVAWRLAVRREWQQTPDAVRARAAELGYPLFVKPANLGSSVGISKVGSPEE 186

Query: 150 IPLDLLQSSSWNHGDQLLIEQYV--DGIELTCGVMGD---ASLDVTEIAVPKSDFYSYEL 204
             LD   + ++    ++++E        E+  G++G+    +  V E++   +DFY YE 
Sbjct: 187 --LDAALTLAFGLDRRVILEAMTPHKPREVEVGILGNDVPVASPVGELSF-DADFYDYET 243

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           KY+   +   +PA+IP ++ + ++  A  A +A+ C G++R DF +   + ++F  E+N 
Sbjct: 244 KYTEGRAEMHIPARIPPEVSERIRTEALRAFRALDCAGLARVDFFYVEETGELFLNEVNT 303

Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            PG T  S++P++   AG S+ EL+  +VE
Sbjct: 304 MPGFTTTSMYPKLFEAAGLSYSELVTRLVE 333


>gi|259506380|ref|ZP_05749282.1| D-alanine--D-alanine ligase [Corynebacterium efficiens YS-314]
 gi|259166021|gb|EEW50575.1| D-alanine--D-alanine ligase [Corynebacterium efficiens YS-314]
          Length = 335

 Score =  139 bits (350), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 86/260 (33%), Positives = 141/260 (54%), Gaps = 23/260 (8%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+ F VLHG FGEDG +Q +  L +IP    G+L+SA  MDK  +K+++++ G+P+   +
Sbjct: 78  DVIFPVLHGRFGEDGTIQGMFALSDIPVVGPGVLSSAAGMDKEFTKKLMAAEGLPIGREV 137

Query: 112 LVN---RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP--LDLLQSSSWNHGDQL 166
           ++      T   + L+  P  +KP +GGSS+GI  + + + +P  +DL +     H +++
Sbjct: 138 ILRDRAELTDAEKKLLGLPVFVKPARGGSSIGISKVSRWEDLPAAVDLAR----QHDEKV 193

Query: 167 LIEQYVDGIELTCGVMG----------DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216
           ++E  + G E+ CGV+            A L  TE    +  FY ++ KY     T  +P
Sbjct: 194 IVESEIVGPEVECGVLQYPDGRIVASLPAMLRGTEDG--EGGFYDFDTKYLDNVVTAEIP 251

Query: 217 AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPE 276
           A +  +I + VQ LA    QA+ C G++R DF     +      EIN  PG TP+S++P+
Sbjct: 252 APLDEEIIELVQSLAVETFQALACEGLARVDFFV--TANGPVLNEINTMPGFTPISMYPQ 309

Query: 277 MAAYAGYSFRELLLWMVEDA 296
           M A +G  + ELL  +V+ A
Sbjct: 310 MFAASGVGYEELLDVLVQQA 329


>gi|256824924|ref|YP_003148884.1| D-alanine--D-alanine ligase [Kytococcus sedentarius DSM 20547]
 gi|256688317|gb|ACV06119.1| D-alanine--D-alanine ligase [Kytococcus sedentarius DSM 20547]
          Length = 376

 Score =  139 bits (350), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 101/351 (28%), Positives = 165/351 (47%), Gaps = 65/351 (18%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +AV+ GG SSE  VS ++  +  +A++   ++V  I + R    V++   P         
Sbjct: 14  VAVVFGGRSSEHPVSCATAASVMAAIDSTKWEVVPIGITREGQWVVSTATPEELAISAGH 73

Query: 52  -------------------------------------DLAFNVLHGNFGEDGLVQAILEL 74
                                                D+ F +LHG FGEDG +Q +LE+
Sbjct: 74  IPEVAGGDEHVIVPLGSAQTDLQVVRQGLPPELLGEVDVVFPLLHGPFGEDGTLQGLLEM 133

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-SILVNR-FTMDSQHLISP------ 126
            ++ Y   G+ +SA+ MDK   K +  + G+ V P  ++ +R +  D Q  ++       
Sbjct: 134 ADLRYVGCGVASSAMMMDKHHMKVIFEAAGLEVGPYRVITDRMWRADRQQALASVEGLEL 193

Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186
           P  +KP + GSS+GI   + D    L+    ++  H  ++++EQ +DG EL C V+    
Sbjct: 194 PVFVKPARAGSSMGI--TRVDDLADLEQAVEAAREHDLKVVVEQGIDGRELECAVLDGHG 251

Query: 187 LD------VTEIAVPKSD-FYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAI 238
            +      V EI V     FY +E KY   +ST +  PA+ P  + +E++RLA  A  A 
Sbjct: 252 AEPPRASTVGEIVVSGGHGFYDFEAKYLDESSTTLSAPAEAPEQVIEEIRRLAVHAFDAA 311

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
            C G++R DF   P   ++   EIN  PG TP S++P + A +G S+ EL+
Sbjct: 312 DCEGLARVDFFVTP-DERILINEINTMPGFTPYSMYPALWAASGISYPELI 361


>gi|325954146|ref|YP_004237806.1| D-alanine--D-alanine ligase [Weeksella virosa DSM 16922]
 gi|323436764|gb|ADX67228.1| D-alanine--D-alanine ligase [Weeksella virosa DSM 16922]
          Length = 329

 Score =  139 bits (350), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 86/248 (34%), Positives = 142/248 (57%), Gaps = 14/248 (5%)

Query: 50  KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109
           K DL +N +HG  GEDG +QA  +L+ +PY       SAL+ +K     V+S  G+P   
Sbjct: 72  KFDLVYNTIHGTPGEDGYLQAYFDLIGLPYNGCDSYQSALTFNKKDCIAVLSKYGIPHAK 131

Query: 110 SI-LVNRFTMDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
           S+ L     ++ + ++     P  +KP K GSSLGI  + +++ IP  L    ++    +
Sbjct: 132 SVYLYQGEKVEPKKIVEQLGLPCFVKPNKSGSSLGISKVHREEDIPKAL--ELAFAEDKE 189

Query: 166 LLIEQYVDGIELTCGVM---GDAS-LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL 221
           +LIE ++DG+E++ GV+   G  + L +TEI V  ++F+ YE KY    S  + PA+I  
Sbjct: 190 VLIEAFLDGLEVSVGVLKYKGKTTVLGITEI-VSDNEFFDYEAKYDG-KSQEITPARISQ 247

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYA 281
           +  + V+ +A   + ++   G SR++++   +  + + LEIN  PGM+P SIFP+ AAYA
Sbjct: 248 ETEESVKAIATKVYDSLNMNGFSRAEYII--VDNQPYLLEINTLPGMSPASIFPQQAAYA 305

Query: 282 GYSFRELL 289
           G S +EL+
Sbjct: 306 GISLQELV 313


>gi|254383276|ref|ZP_04998629.1| D-alanylalanine synthetase [Streptomyces sp. Mg1]
 gi|194342174|gb|EDX23140.1| D-alanylalanine synthetase [Streptomyces sp. Mg1]
          Length = 385

 Score =  139 bits (350), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 92/262 (35%), Positives = 137/262 (52%), Gaps = 21/262 (8%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+ F VLHG +GEDG +Q +LEL  IPY  SG+LASA+  DK   K+V +S G+ V P +
Sbjct: 120 DVVFPVLHGPYGEDGTLQGLLELAGIPYVGSGVLASAVGQDKDYMKRVFTSFGLNVGPYL 179

Query: 112 LV--NRFTMDSQHLISP----------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
            V    +T D+                P  IKP + GSS+GI   K D    LD     +
Sbjct: 180 TVRPREWTRDADAARGRILDFAEEHGWPLFIKPARAGSSIGI--TKVDDVSGLDEAVREA 237

Query: 160 WNHGDQLLIEQYVDGIELTCGVMG-----DASLDVTEIAVPKSDFYSYELKYSSLNSTHV 214
             H  ++++E  + G E+ CGV+       AS+      V   DFY +E KY   +++ +
Sbjct: 238 QRHDPKIIVEARLRGREIECGVLEFEDGPRASVPAEIPPVSSHDFYDFEAKYID-SASGI 296

Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274
           +PA +  +   EV+RLA  A +A  C G+ R+DF        V   EIN  PG TP+S++
Sbjct: 297 VPAPLTPEQTAEVRRLAVEAFEAASCEGLVRADFFLTEDGTFVI-NEINTMPGFTPISMY 355

Query: 275 PEMAAYAGYSFRELLLWMVEDA 296
           P M   +G  ++EL+  +++ A
Sbjct: 356 PRMWQESGVEYQELVDLLIQAA 377


>gi|16330269|ref|NP_440997.1| D-alanyl-alanine synthetase A [Synechocystis sp. PCC 6803]
 gi|2829607|sp|P73632|DDL_SYNY3 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|1652758|dbj|BAA17677.1| D-alanine:D-alanine ligase-related protein [Synechocystis sp. PCC
           6803]
          Length = 354

 Score =  139 bits (350), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 103/338 (30%), Positives = 159/338 (47%), Gaps = 52/338 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDA--------------------GFKVSQIDVDR 40
           + +L GG S E EVS+ S +A A AL                       G  VSQ  +D+
Sbjct: 3   VGLLFGGCSGEHEVSIKSAQAIAKALASDDNQTKYQVSPFYIQKNGVWLGPDVSQQVLDQ 62

Query: 41  SVGL----VLA----HLKPDLA-----FNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87
            V      V A       P+ A     F +LHG  GEDG VQ +  L+++PY  SG+L S
Sbjct: 63  GVPWGDQPVTAGQRWQFPPEAARMEVWFPILHGPNGEDGTVQGLFSLMQVPYVGSGVLGS 122

Query: 88  ALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP------------PYVIKPLKG 135
            + MDK+  K V    G+P    + V R  + S   + P            P  +KP   
Sbjct: 123 CVGMDKLAMKMVFERAGLPQVNYMGVERGEIWSNPCVFPALCEKIEAQVGYPCFVKPANL 182

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI-ELTCGVMGDASLD---VTE 191
           GSS+GI  ++    +   L  ++S++   ++++E  +  I E+ C V+G+ +     V E
Sbjct: 183 GSSVGIAKVRNRSELEAALDNAASYDR--RIIVEAGLTDIREVECAVLGNENPQASVVGE 240

Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
           I    SDFY YE KY+   S   +PA +P  +  ++Q +A  A +A+   G+ R DF + 
Sbjct: 241 ITY-DSDFYDYETKYTDGRSQMHIPANLPKAVVNQIQTMAIQAFKAVDAAGLGRLDFFYQ 299

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           P + ++   EIN  PG T  S++PE+   +G  F  L+
Sbjct: 300 PTTGQIVINEINTLPGFTAFSMYPELWRASGVEFPSLV 337


>gi|150003135|ref|YP_001297879.1| D-alanyl-alanine synthetase A [Bacteroides vulgatus ATCC 8482]
 gi|254882416|ref|ZP_05255126.1| D-Ala-D-Ala ligase [Bacteroides sp. 4_3_47FAA]
 gi|294778334|ref|ZP_06743758.1| D-ala D-ala ligase N-terminal domain protein [Bacteroides vulgatus
           PC510]
 gi|319640482|ref|ZP_07995204.1| D-alanine-D-alanine ligase [Bacteroides sp. 3_1_40A]
 gi|166198472|sp|A6KXU3|DDL_BACV8 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|149931559|gb|ABR38257.1| D-alanine--D-alanine ligase [Bacteroides vulgatus ATCC 8482]
 gi|254835209|gb|EET15518.1| D-Ala-D-Ala ligase [Bacteroides sp. 4_3_47FAA]
 gi|254967040|gb|ACT97556.1| putative D-alanine-D-alanine ligase [uncultured organism]
 gi|294447810|gb|EFG16386.1| D-ala D-ala ligase N-terminal domain protein [Bacteroides vulgatus
           PC510]
 gi|317387969|gb|EFV68826.1| D-alanine-D-alanine ligase [Bacteroides sp. 3_1_40A]
          Length = 324

 Score =  139 bits (350), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 91/323 (28%), Positives = 163/323 (50%), Gaps = 33/323 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKV-----------------SQIDVDRSVG 43
           +A++ GG SSE  VSL S +   S ++   + +                 S+  +DR+  
Sbjct: 5   IAIVAGGDSSELVVSLRSAQGLYSFIDKERYNLYIVEMEGHRWEVVLPDGSKTPIDRNDF 64

Query: 44  LVLAHLKP---DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
             + + +    D A+  +HG  GE+G++Q   +LL IPY+   +L SA++ +K    Q +
Sbjct: 65  SFMENGEKKQFDFAYITIHGTPGENGILQGYFDLLGIPYSSCNVLVSAMTFNKFTCNQYL 124

Query: 101 SSCGVPVCPSILVNR-FTMDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
              G+ V  S+++ + F +  + +I+    P  IKP  GGSS G+  +K  + I   +  
Sbjct: 125 KGFGIRVAESLILRKGFEITDEEVINKIGLPCFIKPNAGGSSFGVTKVKTKEDIQPAI-- 182

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV----TEIAVPKSDFYSYELKYSSLNST 212
             ++   D+++IE ++ G E+TCG    +  +V    TE+ V  ++F+ Y  KY+   S 
Sbjct: 183 EKAFEESDEVMIEAFMKGTEITCGCYKTSDKEVVFPITEV-VSANEFFDYGAKYNG-ESQ 240

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
            + PA++P D  + V+ L    +  +GC G+ R D++      KV  LEIN  PGMT  S
Sbjct: 241 EITPARLPEDTAERVRLLTSAIYDILGCSGLIRIDYIITE-GEKVNLLEINTTPGMTATS 299

Query: 273 IFPEMAAYAGYSFRELLLWMVED 295
             P+    AG   ++++  ++E+
Sbjct: 300 FIPQQVRAAGLDIKDVMTDIIEN 322


>gi|78045802|ref|YP_361977.1| D-alanyl-alanine synthetase A [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|78034232|emb|CAJ21877.1| D-alanine--D-alanine ligase A [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
          Length = 367

 Score =  139 bits (350), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 99/347 (28%), Positives = 171/347 (49%), Gaps = 57/347 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD--------------------- 39
           + ++ GG S+E EVSL S +    AL+   F+   I +D                     
Sbjct: 6   VGLIFGGKSAEHEVSLQSARNILDALDPQRFEPVLIGIDKQGQWHVNDPDSFLLHADDPA 65

Query: 40  --------RSVGLV----LAHLKP----------DLAFNVLHGNFGEDGLVQAILELLEI 77
                   R V L+       ++P          D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  RIALHRSGRGVALLPGAQQQQVRPIQPEQALAQIDVVFPIVHGTLGEDGSLQGLLRMANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT---MDSQHLISP---PYVIK 131
           P+  SG+L SA++MDK  +K+V+   G+ V P +  NR T    D + LI+    P  +K
Sbjct: 126 PFVGSGVLGSAVAMDKDMAKRVLRDAGLAVAPFVCFNRHTAAMADVEALIAQFGLPLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT- 190
           P   GSS+G+  ++        L  + ++++  ++L+E  + G E+ C V+G+A+   + 
Sbjct: 186 PANQGSSVGVSQVRSADQFAAALALALAYDY--KVLVEAAIAGREIECAVLGNATPQASV 243

Query: 191 --EIAVPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
             E+ V  + FYSY+ KY S +    V+PA I     + +Q++A  A+QA+ C G++R D
Sbjct: 244 CGEVVVHDA-FYSYQTKYISEHGAEIVIPADIDARTQQRIQQIAVQAYQALDCAGLARVD 302

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
                  R V   E+N  PG T +S++P++   +G  +R L+  ++E
Sbjct: 303 VFLCADGRIVIN-EVNTLPGFTRISMYPKLWQASGLDYRSLIARLIE 348


>gi|296126249|ref|YP_003633501.1| D-alanine/D-alanine ligase [Brachyspira murdochii DSM 12563]
 gi|296018065|gb|ADG71302.1| D-alanine/D-alanine ligase [Brachyspira murdochii DSM 12563]
          Length = 322

 Score =  139 bits (350), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 103/305 (33%), Positives = 158/305 (51%), Gaps = 18/305 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASAL---EDAGFKVSQIDVDRSVGLV--LAHLKPDLAF 55
           +AVL GG + EREVSL SGK    AL   E+       IDV  +  LV  L     +  +
Sbjct: 20  IAVLHGGQNEEREVSLRSGKNVYKALTSFEELKDNCILIDVQDAYDLVKTLKENNIEYCY 79

Query: 56  NVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL--- 112
           N+LHG  GEDG +Q +LE L I YT   IL SA+ M+K+ +K++  S  V     +L   
Sbjct: 80  NILHGTSGEDGTIQGLLESLNIKYTGENILVSAVCMNKVYTKRIWKSSNVSTSDFVLLKD 139

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
           V      S   ++ P +IKP+  GSS+G+ +IK  +     + +    N+     +E Y+
Sbjct: 140 VKDVNNTSAGGLNFPIIIKPISSGSSVGVSLIKNKEEFDNTIKKIEDINN---YFLEPYI 196

Query: 173 DGIELTCGVMGDASLDVTEIAV----PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
            G E+T G++ +   D+    +     K++ Y Y+ KY+   +   +PAKI  DI K+V 
Sbjct: 197 KGKEITVGLVKEED-DIYVFPILGINSKNEIYDYDAKYTPGKTELEVPAKISKDIEKKVI 255

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
                A+  +GC G+SR D +    + +V+ +E+N Q GMT  S  P MA   G  F +L
Sbjct: 256 ETCKRAYTVLGCGGLSRIDAII--ANDEVYLMEVNTQSGMTDTSDVPAMAKNCGIEFADL 313

Query: 289 LLWMV 293
            L+++
Sbjct: 314 ALYIL 318


>gi|188989640|ref|YP_001901650.1| D-alanyl-alanine synthetase A [Xanthomonas campestris pv.
           campestris str. B100]
 gi|167731400|emb|CAP49575.1| D-alanine-D-alanine ligase A [Xanthomonas campestris pv.
           campestris]
          Length = 368

 Score =  139 bits (350), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 99/347 (28%), Positives = 164/347 (47%), Gaps = 57/347 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD--------------------- 39
           + ++ GG S+E EVSL S +    AL+   F+   I +D                     
Sbjct: 6   VGLIFGGKSAEHEVSLQSARNILQALDPQRFEPVLIGIDKQGQWHLSAPESFLLDADDPS 65

Query: 40  ----------------------RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEI 77
                                 R+V    A  + D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  RIALRHSGRGLAVLPGAASAQLRAVDAEQALAQIDVVFPIVHGTLGEDGSLQGLLRMANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT---MDSQHLISP---PYVIK 131
           P+  SG+L SA++MDK  +K+V+   G+ V P     R T    D Q LI+    P  +K
Sbjct: 126 PFVGSGVLGSAVAMDKDMAKRVLRDAGLEVAPFACFTRHTAAQADVQTLIAQFGLPLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT- 190
           P   GSS+G+  ++  +     L  +  ++H  ++L+E  + G E+ C V+G+A+   + 
Sbjct: 186 PANQGSSVGVSQVRSAEEFSAALELALRYDH--KVLVEAAIAGREIECAVLGNATPQASV 243

Query: 191 --EIAVPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
             E+ V  + FYSYE KY     +  V+PA I       +Q+ A  A+QA+ C G++R D
Sbjct: 244 CGEVVVHDA-FYSYETKYIRDDGAATVIPADIDAHTQHRIQQCALQAYQALDCAGMARVD 302

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
                  R V   E+N  PG T +S++P++   +G  +R L+  ++E
Sbjct: 303 VFLCADGRIVIN-EVNTLPGFTRISMYPKLWEASGLDYRSLVTRLIE 348


>gi|117929360|ref|YP_873911.1| D-alanine--D-alanine ligase [Acidothermus cellulolyticus 11B]
 gi|117649823|gb|ABK53925.1| D-alanine--D-alanine ligase [Acidothermus cellulolyticus 11B]
          Length = 333

 Score =  139 bits (350), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 102/307 (33%), Positives = 157/307 (51%), Gaps = 23/307 (7%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62
           VL GG+S EREVSL+S +    AL   G  V  +DVD SV   L    PD  F  +HG+ 
Sbjct: 9   VLAGGVSFEREVSLASARRVIEALRRLGVDVDLVDVDASVLDRLTADPPDAVFIAMHGSE 68

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT---MD 119
           GEDG ++ +L+L  +PY  +    + L+ DK  +K V+ + GV    SI  ++     + 
Sbjct: 69  GEDGALRELLDLAGVPYVGATAAGARLAFDKTVAKAVLQAAGVAAPRSIAFSQTAIRDLG 128

Query: 120 SQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
              L+         P V+KP +GGS+LG+ ++++  +    L+   +++     L+EQYV
Sbjct: 129 GHQLLDRCVRRLGLPLVVKPARGGSALGVTIVREATAFAHALVTCFAYD--TVALVEQYV 186

Query: 173 DGIELTCGVMGD-----ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227
            G EL   V+ D      +L   EI  P    + Y  +Y++  + + +PA+I        
Sbjct: 187 VGTELAISVVEDDDGTPRALPPVEIR-PVDGMFDYAARYTAGMTEYHVPARITETARDRA 245

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF-- 285
             +A  AHQA+G R +SR+D +      +V +LE NV PGMTP S+ P  AA  G     
Sbjct: 246 VDVALRAHQALGLRDLSRTDVIVTA-DDEVLYLETNVAPGMTPTSLLPMAAAEVGIDLGT 304

Query: 286 --RELLL 290
             R+LL+
Sbjct: 305 LCRDLLV 311


>gi|295402558|ref|ZP_06812507.1| D-alanine/D-alanine ligase [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|312112530|ref|YP_003990846.1| D-alanine/D-alanine ligase [Geobacillus sp. Y4.1MC1]
 gi|294975406|gb|EFG51035.1| D-alanine/D-alanine ligase [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|311217631|gb|ADP76235.1| D-alanine/D-alanine ligase [Geobacillus sp. Y4.1MC1]
          Length = 364

 Score =  139 bits (350), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 98/345 (28%), Positives = 163/345 (47%), Gaps = 54/345 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------DRSVGLVLA---- 47
           + +L GG S E  VSLS+  A  +A++   F V  I +         +R  G V      
Sbjct: 5   VGILYGGKSPEHNVSLSTAMAVMNAIDKTKFDVIPIYITTEGQWIKGERLTGQVTEIKQL 64

Query: 48  --------------HLKP-------------DLAFNVLHGNFGEDGLVQAILELLEIPYT 80
                         +  P             D+ F +LHG  GEDG VQ +LELL IPY 
Sbjct: 65  QFQSEAKAIIPVALNQTPTAADGKKQEEAAVDVIFPLLHGPNGEDGTVQGLLELLNIPYV 124

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIK 131
            +G+LASA+ MDK+  K + +  G+     +   +              +  +  P  +K
Sbjct: 125 GNGVLASAVGMDKVVMKNLFAQAGLRQAKYVSFTKREWSKNEEAAYDKVEQALGYPCFVK 184

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG--DASLDV 189
           P   GSS+GI   K+   +     ++  ++   ++++E+ + G E+  GV+G  D    V
Sbjct: 185 PANAGSSVGITKCKRRADLQAAFAEAFKYDR--KIIVEEAIVGREIEIGVIGNDDPICSV 242

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
               VPK +FY Y+ KY   N+  ++PA +  + Y+ ++++A  A +A+   G+ R+DF 
Sbjct: 243 VGEIVPKKEFYDYQAKYEDGNTELIIPADVTSEQYETIKQMAITAFKALDLSGLVRADFF 302

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
                 +V+  EIN  PG TP S+FP +  ++G S+ EL+  +V+
Sbjct: 303 LGE-DGEVYINEINTMPGFTPYSMFPLLWKHSGISYPELIERLVQ 346


>gi|224024579|ref|ZP_03642945.1| hypothetical protein BACCOPRO_01305 [Bacteroides coprophilus DSM
           18228]
 gi|224017801|gb|EEF75813.1| hypothetical protein BACCOPRO_01305 [Bacteroides coprophilus DSM
           18228]
          Length = 337

 Score =  139 bits (349), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 95/323 (29%), Positives = 159/323 (49%), Gaps = 33/323 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40
           +A++ GG SSE  VS+ S +   S ++   + +  +++                    D 
Sbjct: 16  IAIVAGGDSSEHGVSMKSAEGIYSFIDQQKYNLYIVELTHKSWEAILPDGTRAAIDKNDF 75

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           S       +KPD A+  +HG  GE+G++Q   EL+ +PY+   +L SAL+  K    Q +
Sbjct: 76  SFEENGKRIKPDFAYITIHGTPGENGILQGYFELIGMPYSTCDVLVSALTFSKFLLNQYL 135

Query: 101 SSCGVPVCPSILVNRFT--MDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
              G+ V  S+LV +     D Q    I  P  IKP   GSS G+  +K  + I   L  
Sbjct: 136 KGFGIRVAESLLVKKKNGITDEQVIETIGLPCFIKPNASGSSFGVTKVKTKEQIQPAL-- 193

Query: 157 SSSWNHGDQLLIEQYVDGIELT--CGVMGDASL--DVTEIAVPKSDFYSYELKYSSLNST 212
            +++   D ++IE ++DGIEL   C    D S+   +TE+ V K++F+ +  KY     T
Sbjct: 194 EAAFKESDDVMIEAFMDGIELANGCYKTHDKSVVFPITEV-VSKNEFFDFNAKYKG-EVT 251

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
            + PA++  ++ + VQ+L    +  + C+GI R D++      K+  LEIN  PGMT  S
Sbjct: 252 EITPARLSPELTQRVQQLTSAIYDILDCKGIVRVDYIITE-GDKINMLEINTTPGMTATS 310

Query: 273 IFPEMAAYAGYSFRELLLWMVED 295
             P+    AG   ++++  ++ED
Sbjct: 311 FIPQQVRAAGLDIKDVMTDIIED 333


>gi|227495298|ref|ZP_03925614.1| D-alanine--D-alanine ligase [Actinomyces coleocanis DSM 15436]
 gi|226831168|gb|EEH63551.1| D-alanine--D-alanine ligase [Actinomyces coleocanis DSM 15436]
          Length = 370

 Score =  139 bits (349), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 88/283 (31%), Positives = 142/283 (50%), Gaps = 21/283 (7%)

Query: 31  FKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
           F  S  +V + +G V      D+ F +LHG FGEDG +Q +L+  ++ Y   G+ ASA  
Sbjct: 92  FSASNPEVFKDLGEV------DVVFPLLHGPFGEDGTIQGLLDTADVRYVGCGLTASAAG 145

Query: 91  MDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQ------HLISPPYVIKPLKGGSSLGII 142
           MDK  +K ++   G+PV    L+   ++  D +        +     +KP + GSS+GI 
Sbjct: 146 MDKHLTKTIIQQAGIPVGRWELITDRQWLQDREGCLERIKALGEVVFVKPNRAGSSVGIT 205

Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM----GDASLDVTEIAVPKSD 198
            +       L+     +  H  ++++E    G EL CGV+    G  +  V EI V  +D
Sbjct: 206 RVA--DFTQLEAAVEEARRHDPRVIVEAATPGRELECGVLEFLDGPRASAVGEITVSGAD 263

Query: 199 FYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
           FY +E KY   ++  + +PA IP  +   +Q  A     A+GC G+SR DF ++  + ++
Sbjct: 264 FYDFETKYQDPDAVSLSIPADIPEGVRMRLQEAAVKVFDALGCEGLSRVDFFYNEETDEL 323

Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
              EIN  PG TP S++P M    G S+ EL+  +++ A   R
Sbjct: 324 SLNEINTMPGFTPFSMYPTMWQQQGLSYPELVTHLIDMALTRR 366


>gi|318604546|emb|CBY26044.1| D-alanine--D-alanine ligase [Yersinia enterocolitica subsp.
           palearctica Y11]
          Length = 366

 Score =  139 bits (349), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 101/354 (28%), Positives = 171/354 (48%), Gaps = 71/354 (20%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------------------- 40
           + V+ GG S+E EVSL S K    A++   F V+ + +D+                    
Sbjct: 6   VGVIFGGKSAEHEVSLQSAKNIVDAIDKEKFDVTLLGIDKQGKWHVNDASNYLLNAENPA 65

Query: 41  ---------SVGLV----------------LAHLKPDLAFNVLHGNFGEDGLVQAILELL 75
                    +V L+                LA L  D+ F ++HG  GEDG +Q +L + 
Sbjct: 66  LISLNHSNKNVALIPGQEHQQLIATDNASALAQL--DVIFPIVHGTLGEDGSLQGLLRMA 123

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYV 129
            IP+  SG+L SA+SMDK  +K+++   G+ + P I + R   D+         +  P  
Sbjct: 124 NIPFVGSGVLGSAVSMDKDITKRLLRDAGLNIAPFITLTRANKDNYRFEQVTAKLGLPLF 183

Query: 130 IKPLKGGSSLGIIVIKK----DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD- 184
           IKP   GSS+G+  ++     +Q++ L      +++   ++L+E  + G E+ C VMG+ 
Sbjct: 184 IKPANQGSSVGVSKVRNAYEYEQAVAL------AFDFDHKVLVESAIVGREIECAVMGND 237

Query: 185 ---ASLDVTEIAVPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
              ASL   E+ +   +FYSY+ KY +   +  ++PA I   +   ++ +A  A +A+ C
Sbjct: 238 NPQASL-CGEVVI-SDEFYSYDTKYINETGAKVIIPASIGSAVSDNIRAVALAAFRALEC 295

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           RG++R D    P +R V   EIN  PG T +S++P++    G    EL+  ++E
Sbjct: 296 RGMARVDVFLTPDNR-VIINEINTLPGFTNISMYPKLWRATGGGSTELITTLIE 348


>gi|254967036|gb|ACT97554.1| putative D-alanine-D-alanine ligase [uncultured organism]
          Length = 324

 Score =  139 bits (349), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 91/323 (28%), Positives = 163/323 (50%), Gaps = 33/323 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKV-----------------SQIDVDRSVG 43
           +A++ GG SSE  VSL S +   S ++   + +                 S+  +DR+  
Sbjct: 5   IAIVAGGDSSELVVSLRSAQGLYSFIDKERYNLYIVEMEGHRWEVVLPDGSKTPIDRNDF 64

Query: 44  LVLAHLKP---DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
             + + +    D A+  +HG  GE+G++Q   +LL IPY+   +L SA++ +K    Q +
Sbjct: 65  SFMENGEKKHFDFAYITIHGTPGENGILQGYFDLLGIPYSSCNVLVSAMTFNKFTCNQYL 124

Query: 101 SSCGVPVCPSILVNR-FTMDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
              G+ V  S+++ + F +  + +I+    P  IKP  GGSS G+  +K  + I   +  
Sbjct: 125 KGFGIRVAESLILRKGFEITDEEVINKIGLPCFIKPNAGGSSFGVTKVKTKEDIQPAI-- 182

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV----TEIAVPKSDFYSYELKYSSLNST 212
             ++   D+++IE ++ G E+TCG    +  +V    TE+ V  ++F+ Y  KY+   S 
Sbjct: 183 EKAFEESDEVMIEAFMRGTEITCGCYKTSDKEVVFPITEV-VSANEFFDYGAKYNG-ESQ 240

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
            + PA++P D  + V+ L    +  +GC G+ R D++      KV  LEIN  PGMT  S
Sbjct: 241 EITPARLPEDTAERVRLLTSAIYDILGCSGLIRIDYIITE-GEKVNLLEINTTPGMTATS 299

Query: 273 IFPEMAAYAGYSFRELLLWMVED 295
             P+    AG   ++++  ++E+
Sbjct: 300 FIPQQVRAAGLDIKDVMTDIIEN 322


>gi|237708678|ref|ZP_04539159.1| D-alanyl-alanine synthetase A [Bacteroides sp. 9_1_42FAA]
 gi|237724044|ref|ZP_04554525.1| D-alanyl-alanine synthetase A [Bacteroides sp. D4]
 gi|265755352|ref|ZP_06090122.1| D-alanyl-alanine synthetase A [Bacteroides sp. 3_1_33FAA]
 gi|229437504|gb|EEO47581.1| D-alanyl-alanine synthetase A [Bacteroides dorei 5_1_36/D4]
 gi|229457378|gb|EEO63099.1| D-alanyl-alanine synthetase A [Bacteroides sp. 9_1_42FAA]
 gi|263234494|gb|EEZ20084.1| D-alanyl-alanine synthetase A [Bacteroides sp. 3_1_33FAA]
          Length = 324

 Score =  139 bits (349), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 91/323 (28%), Positives = 163/323 (50%), Gaps = 33/323 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKV-----------------SQIDVDRSVG 43
           +A++ GG SSE  VSL S +   S ++   + +                 S+  +DR+  
Sbjct: 5   IAIVAGGDSSELVVSLRSAQGLYSFIDKERYNLYIVEMEGHRWEVVLPDGSKTPIDRNDF 64

Query: 44  LVLAHLKP---DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
             + + +    D A+  +HG  GE+G++Q   +LL IPY+   +L SA++ +K    Q +
Sbjct: 65  SFMENGEKKHFDFAYITIHGTPGENGILQGYFDLLGIPYSSCNVLVSAMTFNKFTCNQYL 124

Query: 101 SSCGVPVCPSILVNR-FTMDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
              G+ V  S+++ + F +  + +I+    P  IKP  GGSS G+  +K  + I   +  
Sbjct: 125 KGFGIRVAESLILRKGFEITDEEVINKIGLPCFIKPNAGGSSFGVTKVKTKEDIQPAI-- 182

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV----TEIAVPKSDFYSYELKYSSLNST 212
             ++   D+++IE ++ G E+TCG    +  +V    TE+ V  ++F+ Y  KY+   S 
Sbjct: 183 EKAFKESDEVMIEAFMRGTEITCGCYKTSDKEVVFPITEV-VSANEFFDYGAKYNG-ESQ 240

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
            + PA++P D  + V+ L    +  +GC G+ R D++      KV  LEIN  PGMT  S
Sbjct: 241 EITPARLPEDTAERVRLLTSAIYDILGCSGLIRIDYIITE-GEKVNLLEINTTPGMTATS 299

Query: 273 IFPEMAAYAGYSFRELLLWMVED 295
             P+    AG   ++++  ++E+
Sbjct: 300 FIPQQVRAAGLDIKDVMTDIIEN 322


>gi|167464092|ref|ZP_02329181.1| Ddl [Paenibacillus larvae subsp. larvae BRL-230010]
 gi|322383284|ref|ZP_08057084.1| D-alanyl-alanine synthetase A-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
 gi|321152404|gb|EFX45203.1| D-alanyl-alanine synthetase A-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
          Length = 373

 Score =  139 bits (349), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 84/251 (33%), Positives = 131/251 (52%), Gaps = 15/251 (5%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+   +LHG FGEDG +Q + E+  IPY  +G+LASA+ MDK+  K+V +   +P C   
Sbjct: 102 DVVLPLLHGTFGEDGTIQGLFEMANIPYAGAGVLASAVGMDKVIMKKVFAQEDLPQCVFR 161

Query: 112 LVNR---------FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
              R         F M  +  I  P  IKP   GSS+GI   +    +   + ++  ++ 
Sbjct: 162 HFTRSQWQKDQPFFLMGLEISIGYPCFIKPANLGSSVGISKARNRDELIKAVEEAFKYDR 221

Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVTE----IAVPKSDFYSYELKYSSLNSTHVLPAK 218
             +++IE++V+  E+   V+G+   +V+     I+   SDFY Y+ KY   NS  V+PA 
Sbjct: 222 --KVIIEEFVEAREIEVAVLGNEEPEVSVPGEIISSKNSDFYDYKAKYQDGNSIMVIPAD 279

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278
           IP +   ++Q LA  A +AI   G+SR DF        +   EIN  PG TP S++P + 
Sbjct: 280 IPEETAAQIQELAIRAFKAIDGSGLSRVDFFMRNSDGHILINEINTMPGFTPFSMYPLLW 339

Query: 279 AYAGYSFRELL 289
             +G  + +LL
Sbjct: 340 KESGKPYAQLL 350


>gi|289643153|ref|ZP_06475282.1| D-alanine/D-alanine ligase [Frankia symbiont of Datisca glomerata]
 gi|289507045|gb|EFD28015.1| D-alanine/D-alanine ligase [Frankia symbiont of Datisca glomerata]
          Length = 385

 Score =  139 bits (349), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 82/255 (32%), Positives = 133/255 (52%), Gaps = 16/255 (6%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+ F +LHG FGEDG VQ +LE+  +PY  SG+ ASA +MDK   K ++++ G+ + P  
Sbjct: 123 DVVFPLLHGPFGEDGTVQGLLEMAAVPYVGSGVFASAAAMDKQYMKILLAAAGLDIGPYT 182

Query: 112 LVN---RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168
           ++      + D +  +  P  +KP +GGSS+GI  +     +   L  + + +   ++L+
Sbjct: 183 VLRAGQALSGDDRERLGLPVFVKPARGGSSIGISRVDAWDDLATALKAARAVDP--KVLV 240

Query: 169 EQYVDGIELTCGVMGDASLDVTEIAVP----------KSDFYSYELKYSSLNSTHVLPAK 218
           E  V G E+ CGV+G       E ++P           + FY +E KY S  +   +PA 
Sbjct: 241 EAAVVGREVECGVLGSLDGGGPEASLPAEVTVASSAGSAGFYDFEAKYLSDAARFDVPAN 300

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278
           +P ++   V+++A  A  A+ C G++R D    P    V   E+N  PG TP S+FP M 
Sbjct: 301 LPAEVTAAVRQIAVRAFVALDCAGLARVDVFVRP-DGSVVVNEVNTMPGFTPTSMFPRMW 359

Query: 279 AYAGYSFRELLLWMV 293
           A  G  +  L+  +V
Sbjct: 360 AATGLDYPRLVDRLV 374


>gi|309806919|ref|ZP_07700903.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus iners
           LactinV 03V1-b]
 gi|309807354|ref|ZP_07701321.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus iners
           LactinV 01V1-a]
 gi|312872728|ref|ZP_07732793.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus iners
           LEAF 2062A-h1]
 gi|312874059|ref|ZP_07734094.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus iners
           LEAF 2052A-d]
 gi|308166686|gb|EFO68881.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus iners
           LactinV 03V1-b]
 gi|308169403|gb|EFO71454.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus iners
           LactinV 01V1-a]
 gi|311090399|gb|EFQ48808.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus iners
           LEAF 2052A-d]
 gi|311091770|gb|EFQ50149.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus iners
           LEAF 2062A-h1]
          Length = 361

 Score =  139 bits (349), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 102/343 (29%), Positives = 171/343 (49%), Gaps = 50/343 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALE------------DAGFKVS-------------Q 35
           + ++ GG SSE EVS+ SG+    A++            + GF  S             Q
Sbjct: 7   VGLIFGGNSSEYEVSIISGRNIYKAIDKEKYDVYPMWITNTGFLASDADSRKVLEDPTYQ 66

Query: 36  IDVDRSV----GLVLAHLKP--DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
           I+  R+V     ++    +P  D+ F ++HGN GEDG +Q +L +L+ P+    +LA+A+
Sbjct: 67  IENPRTVTNISNVIELSNRPEIDVFFPIVHGNLGEDGCLQGLLRILDKPFVGDDVLAAAI 126

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYV---------IKPLKGGSS 138
           +MDK  +K +    GVPV   I + RF  D      +S  YV         +KP   GSS
Sbjct: 127 TMDKELNKIMAQRAGVPVAKWISIKRFEYDDAKNEKLSYDYVSQQLGTDLFVKPSNQGSS 186

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVP 195
           +GI  +         L +  ++ + D++L+E+ + G E+   V+G+    V+   +I   
Sbjct: 187 VGISHVTSAADYEKALAE--AFKYDDKVLVEETIKGTEVETAVLGNDDAIVSGVGQITNA 244

Query: 196 KSDFYSYELKYSSLNSTHVL--PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
           +  +YSYE KY+  NST  L  PA +P +I + V+  A   + A  C G++R D +    
Sbjct: 245 QGSWYSYENKYND-NSTSKLQIPADLPAEIVETVRSQALKVYHATECSGLARVDSMLTTD 303

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             KV + E+N  PG T +S++P++   AG  + EL+  +++ A
Sbjct: 304 GHKVIFNELNALPGFTNISMYPKLFEEAGIPYAELITKLLDYA 346


>gi|238921591|ref|YP_002935106.1| hypothetical protein NT01EI_3744 [Edwardsiella ictaluri 93-146]
 gi|238871160|gb|ACR70871.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146]
          Length = 390

 Score =  139 bits (349), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 94/346 (27%), Positives = 169/346 (48%), Gaps = 55/346 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS------------------V 42
           + ++ GG S E EVSL S K    A++ + F V+ I +D+                    
Sbjct: 29  VGIVFGGQSCEHEVSLQSAKNIVEAIDQSRFDVTLIGIDKQGYWHLCSGQDYLNHAHDPQ 88

Query: 43  GLVLAHLKPDLA-------------------------FNVLHGNFGEDGLVQAILELLEI 77
            + L H +  LA                         F ++HG  GEDG +Q +L++L +
Sbjct: 89  HIALNHSERRLAVIPGAIQGQLIDSVSGEILPSLDVIFPIVHGTLGEDGCLQGMLKMLNL 148

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIK 131
           P+  S ++ SA  MDK   K+++   G+P+ P + + R T    +       +     +K
Sbjct: 149 PFVGSDVIGSAACMDKEVCKRLLRDAGLPITPFVTLTRATQTHYNYETLRSQLGETLFVK 208

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD--ASLDV 189
           P   GSS+G+  ++        +  +  ++H  ++++E+ V G E+ C ++G+  A   V
Sbjct: 209 PANQGSSVGVNKVRNADEYHRAIADALRFDH--KVIVERGVIGHEIECAILGNEVAQASV 266

Query: 190 TEIAVPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               V  SDFYSY+ KY S+ ++  V+PA +  ++ + V++ A  A QA+ CRG++R D 
Sbjct: 267 CGEIVLHSDFYSYDSKYISAQDAQVVVPAAMAPEVSERVRQTALRAFQALECRGLARVD- 325

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           +F     +V   EIN  PG T +S++P++   +G S++ L+  ++E
Sbjct: 326 VFVTAENEVIINEINTLPGFTNISMYPKLWQASGISYQALITQLIE 371


>gi|15827889|ref|NP_302152.1| D-alanyl-alanine synthetase A [Mycobacterium leprae TN]
 gi|221230366|ref|YP_002503782.1| D-alanyl-alanine synthetase A [Mycobacterium leprae Br4923]
 gi|18202756|sp|Q9CBS0|DDL_MYCLE RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|13093442|emb|CAC30631.1| D-alanine-D-alanine ligase A [Mycobacterium leprae]
 gi|219933473|emb|CAR71773.1| D-alanine-D-alanine ligase A [Mycobacterium leprae Br4923]
          Length = 384

 Score =  139 bits (349), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 90/259 (34%), Positives = 143/259 (55%), Gaps = 18/259 (6%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+ F VLHG +GEDG +Q +LEL  +PY  +G+LASA  MDK  +K++ ++ G+P+    
Sbjct: 122 DVVFPVLHGPYGEDGTIQGLLELARVPYVGAGVLASAAGMDKEFTKKLFAAEGLPLSAYT 181

Query: 112 LVN--RFTMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL 167
           ++   R T+  Q    +S P  +KP +GGSS+GI  +     +P  +  + +  H  +++
Sbjct: 182 VLRPLRPTLHRQECERLSLPVFVKPARGGSSIGISRVSSWGQLPSAI--AYARRHDPKVI 239

Query: 168 IEQYVDGIELTCGV--MGDASL---DVTEIAVP-----KSDFYSYELKYSSLNSTHVLPA 217
           +E  V+G EL CGV  M D ++    V EI V      +  FY +  KY    +   +PA
Sbjct: 240 VEAAVNGRELECGVLEMPDGTVAASAVGEIRVAGVSGSEDSFYDFTTKYLDDAAELDVPA 299

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
           K+  D+  EV++LA  A +AI C+G++R DF        +   EIN  PG T  S++P++
Sbjct: 300 KVDDDVADEVRQLAIQAFRAIDCQGLARVDFFLTDDGPVIN--EINTMPGFTMTSMYPKL 357

Query: 278 AAYAGYSFRELLLWMVEDA 296
            A +   +  LL  MV+ A
Sbjct: 358 WAVSSVDYPTLLATMVDTA 376


>gi|158336262|ref|YP_001517436.1| D-alanyl-alanine synthetase A [Acaryochloris marina MBIC11017]
 gi|190359103|sp|B0CEL5|DDL_ACAM1 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|158306503|gb|ABW28120.1| D-alanine--D-alanine ligase [Acaryochloris marina MBIC11017]
          Length = 352

 Score =  139 bits (349), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 103/341 (30%), Positives = 170/341 (49%), Gaps = 51/341 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDA----GFKVSQIDVDRS--------VGLVLAH 48
           + ++ GG S E EVS++S KA   AL+ A     ++V    + ++           VL  
Sbjct: 6   VGLVFGGCSGEHEVSITSAKAVCGALQTAPNPDKYEVIPFYIHKNGCWQAGEVANQVLEM 65

Query: 49  LKP-------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
            KP                   D+ F +LHG  GEDG +Q +L+L+++PY  SG+L SA 
Sbjct: 66  GKPQDQAEEGSRWHFPEAAASIDVWFPILHGPNGEDGTIQGLLQLMQVPYVGSGVLGSAA 125

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ------------HLISPPYVIKPLKGGS 137
            MDK+  K V ++ G+P      V R  + S               I  P  +KP   GS
Sbjct: 126 GMDKIAMKTVFAAAGLPQVKYESVTREQVWSDPCVFKQVCDRIDETIGYPNFVKPANLGS 185

Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD----ASLDVTEIA 193
           S+GI  ++    +   L  ++S++   ++++E  V   E+ C V+G+    AS+ V EI+
Sbjct: 186 SVGISKVRSRLELEAALDSAASFDR--RIVVEAGVVAREVECAVLGNGRPRASV-VGEIS 242

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
              SDFY YE KY+   ++  +PA +P DI +++Q +A  A  A+   G+SR DF +   
Sbjct: 243 F-DSDFYDYETKYTEGRASLQIPAPLPADITEKIQEMAINAFIAVDAAGLSRVDFFYVES 301

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           + +V   EIN  PG T  S++P + + +G  F +L+  +++
Sbjct: 302 TGEVLINEINTLPGFTSTSMYPMLWSVSGVDFPKLVDRLIQ 342


>gi|119489841|ref|ZP_01622596.1| D-alanylalanine synthetase [Lyngbya sp. PCC 8106]
 gi|119454269|gb|EAW35420.1| D-alanylalanine synthetase [Lyngbya sp. PCC 8106]
          Length = 364

 Score =  139 bits (349), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 101/349 (28%), Positives = 169/349 (48%), Gaps = 57/349 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALE-----------------DAGFKVSQI------- 36
           + +L GG S E EVS+ S +A A AL+                 D  ++  +I       
Sbjct: 6   VGLLFGGRSGEHEVSIRSAQAIAKALKSDQNASKYELLPVYIGKDGVWQKGEIAQQIIAS 65

Query: 37  --------DVDRSVGLVLA-HLKPD--------LAFNVLHGNFGEDGLVQAILELLEIPY 79
                   +   S  LV +  L PD        + F +LHG  GEDG +Q +L L+++P+
Sbjct: 66  GEPLYLTDEKTTSTDLVPSPSLLPDPTNFAEIEVWFPILHGPNGEDGTIQGLLTLMQVPF 125

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP------------P 127
             SG+L SA+ MDK+  K + S  G+      +V R  + S   + P            P
Sbjct: 126 VGSGVLGSAVGMDKIAMKMIFSQAGLSQVKYKMVTRSQIWSNPCVFPKLCDELELELGYP 185

Query: 128 YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL 187
             +KP   GSS+GI  ++    +   L  ++S++   ++++E  V+  EL C V+G+ + 
Sbjct: 186 CFVKPANLGSSVGISKVRSRAELETALDNAASYDR--RIIVEAGVEARELECAVLGNDTP 243

Query: 188 DVTEIA--VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
             + +      SDFY YE KY++  +   +PAK+  +I  +V+ +A  A  A+   G++R
Sbjct: 244 QASTVGEITFASDFYDYETKYTAGQADLFIPAKVSDNIANQVKEMAVKAFLAVDAAGLAR 303

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            DF +   + +V   EIN  PG T  S++P++ A +G SF EL+  +V+
Sbjct: 304 VDFFYVEKTGEVLINEINTLPGFTATSMYPQLWAASGISFSELVDRLVQ 352


>gi|114793805|pdb|2FB9|A Chain A, Crystal Structure Of The Apo Form Of D-Alanine: D-Alanine
           Ligase (Ddl) From Thermus Caldophilus: A Basis For The
           Substrate-Induced Conformational Changes
          Length = 322

 Score =  139 bits (349), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 85/248 (34%), Positives = 140/248 (56%), Gaps = 8/248 (3%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+ F +LHG FGEDG VQ  LELL  PY  +G+ ASAL MDK  SK+V++  GVPV P +
Sbjct: 78  DVVFPLLHGRFGEDGTVQGFLELLGKPYVGAGVAASALCMDKDLSKRVLAQAGVPVVPWV 137

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
            V +           P+ +KP   GSS+GI  +++ Q   L+   + ++ + ++ ++E+ 
Sbjct: 138 AVRKGEPPVVPFDP-PFFVKPANTGSSVGISRVERFQD--LEAALALAFRYDEKAVVEKA 194

Query: 172 VDGI-ELTCGVMGDASLDVTEIAVPKSD--FYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           +  + EL  GV+G+   + + +   + +  FY YE KY+   +  ++PA +     + VQ
Sbjct: 195 LSPVRELEVGVLGNVFGEASPVGEVRYEAPFYDYETKYTPGRAELLIPAPLDPGTQETVQ 254

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
            LA  A++ +G RG++R DF       +++  E+N  PG TP S++P +    G ++ EL
Sbjct: 255 ELALKAYKVLGVRGMARVDFFLA--EGELYLNELNTIPGFTPTSMYPRLFEAGGVAYPEL 312

Query: 289 LLWMVEDA 296
           L  +VE A
Sbjct: 313 LRRLVELA 320


>gi|167757614|ref|ZP_02429741.1| hypothetical protein CLORAM_03164 [Clostridium ramosum DSM 1402]
 gi|237735168|ref|ZP_04565649.1| D-alanine-D-alanine ligase B [Mollicutes bacterium D7]
 gi|167702611|gb|EDS17190.1| hypothetical protein CLORAM_03164 [Clostridium ramosum DSM 1402]
 gi|229381944|gb|EEO32035.1| D-alanine-D-alanine ligase B [Coprobacillus sp. D7]
          Length = 346

 Score =  139 bits (349), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 92/334 (27%), Positives = 163/334 (48%), Gaps = 47/334 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44
           + VL GG SSE  VS  S  +  + L+   ++++ + +D   G                 
Sbjct: 5   LLVLCGGQSSEHIVSRMSCTSVLNNLDANKYEITLVGIDLDGGWHYLDAKQTDLAKNTWL 64

Query: 45  --------VLAHLK-PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
                   V   LK  D+AF VLHG +GEDG +Q + EL ++PY    ++ S+++MDK+ 
Sbjct: 65  DNSSMVEDVYGLLKNQDVAFPVLHGMYGEDGTIQGLFELAKLPYVGCRVMGSSVAMDKIY 124

Query: 96  SKQVVSSCGVPVCPSILVNRF----------TMDSQHLISP--------PYVIKPLKGGS 137
           +K+++ + GVP   S+ V +           T D    I          P  IK  + GS
Sbjct: 125 TKKILDTVGVPQVKSVYVKKRYDEKLVVVTNTFDEIEEIEDYIVRELGMPCFIKASRSGS 184

Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA--VP 195
           S+G         +   L +++ ++    +++E+ +D IEL   V+G+  + V+ +   +P
Sbjct: 185 SVGCYRCDNQTELIGKLSEAAKYDR--HVVVEECIDCIELETAVLGNDDVIVSRVGQIMP 242

Query: 196 KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255
             +FY++E KY    S   +PA +   I +++++ A    +A+   G+SR DF  D  + 
Sbjct: 243 HGEFYTFESKYEDEESKTCIPALVDEQIQEQIRQYAIKVFKAVDGHGLSRVDFFLDKKTN 302

Query: 256 KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           K++  EIN  PG T +S++P++    G ++ ELL
Sbjct: 303 KIYLNEINTMPGFTKISMYPQLMNDFGITYPELL 336


>gi|332292608|ref|YP_004431217.1| D-alanine--D-alanine ligase [Krokinobacter diaphorus 4H-3-7-5]
 gi|332170694|gb|AEE19949.1| D-alanine--D-alanine ligase [Krokinobacter diaphorus 4H-3-7-5]
          Length = 332

 Score =  138 bits (348), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 106/331 (32%), Positives = 163/331 (49%), Gaps = 39/331 (11%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSV------GLVLAHLKPDLA 54
           +AVLMGG SSE ++SL+SG    ++L+   ++V  + + +        G   A  K D +
Sbjct: 6   IAVLMGGYSSEYQISLNSGATVVASLDKEKYQVYAVHILKEGWFCVIDGERFAIDKGDFS 65

Query: 55  F--------------NVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           F              N +HG  GEDG +QA LELL IP T      SA++ +K  +  V+
Sbjct: 66  FIDAFAKKVTFQACYNTIHGTPGEDGKLQAYLELLGIPQTSCDFYESAMTFNKRDTLSVL 125

Query: 101 SSCGVPVCPSILVNR-------FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153
           SS GVP+  S+ VN+       F       +  P  +KP + GSS G+  + K+  +   
Sbjct: 126 SSYGVPMAQSVYVNKGDVIDMPFKNSLALKVGYPCFVKPNRAGSSYGVSKVYKEGDLEQA 185

Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCGVM---GDAS-LDVTEIAVPKSDFYSYELKYSSL 209
           L    +++   Q+LIE ++ G E++ GV    G+   L   EI VP  DF+S E KYS  
Sbjct: 186 L--EHAFSEDSQVLIESFLSGTEVSVGVYNFGGETQVLPACEI-VPDGDFFSLEAKYSG- 241

Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
            S  ++PA++      EVQ L    +  +  +GI R DF+F     K  ++E+N  PG++
Sbjct: 242 KSQEIVPARLSEKETNEVQGLTKGIYDLLSLKGICRVDFIFH--EGKPHFVEVNTNPGLS 299

Query: 270 PVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
             SI P     AG S  E+    +E   C++
Sbjct: 300 KESIIPREFKAAGLSLAEVFGEAIE--HCIK 328


>gi|329936757|ref|ZP_08286464.1| D-alanine-D-alanine ligase [Streptomyces griseoaurantiacus M045]
 gi|329303987|gb|EGG47870.1| D-alanine-D-alanine ligase [Streptomyces griseoaurantiacus M045]
          Length = 385

 Score =  138 bits (348), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 92/263 (34%), Positives = 138/263 (52%), Gaps = 23/263 (8%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+ F VLHG +GEDG +Q +LEL  +PY  SG+LASA+  DK   K+V +S G+ V P +
Sbjct: 120 DVVFPVLHGPYGEDGTLQGLLELSGVPYVGSGVLASAVGQDKDYMKRVFTSFGLKVGPYV 179

Query: 112 LVNRFTMDSQHLISP------------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
           ++     +     +             P  +KP + GSS+GI   K D    LD     +
Sbjct: 180 VIRPREWERDRSAARKRIVDFAGEHGWPLFVKPARAGSSIGI--TKVDGLAGLDEAIEEA 237

Query: 160 WNHGDQLLIEQYVDGIELTCGVM----GDASLDVTEIAVPKSD-FYSYELKYSSLNST-H 213
             H  ++L+E  + G E+ CGV+    G  +    EI  P +  +Y +E KY  ++ST  
Sbjct: 238 RRHDPKILVEAELRGREIECGVLEFEEGPRASVPAEIPPPDTHAYYDFEAKY--IDSTPG 295

Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273
           ++PA +  +   EV+RLA  A +A  C G+ R+DF        V   EIN  PG TP+S+
Sbjct: 296 LVPAPLTAEETAEVRRLAVEAFEAASCEGLVRADFFLTEEGEFVI-NEINTMPGFTPISM 354

Query: 274 FPEMAAYAGYSFRELLLWMVEDA 296
           FP+M    G S+ EL+  ++E A
Sbjct: 355 FPQMWQATGVSYGELVDRLIESA 377


>gi|213021542|ref|ZP_03335989.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Typhi str. 404ty]
          Length = 236

 Score =  138 bits (348), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 84/228 (36%), Positives = 129/228 (56%), Gaps = 12/228 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+ER+VSL+SG A  + L + G     +D        L  +     F  LHG
Sbjct: 5   IAVLLGGTSAERDVSLNSGAAVLAGLREGGIDAHPVDPQEVDVAQLKAMGFQKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR----- 115
             GEDG +Q +LELL +PYT SG++ASALSMDK+RSK +    G+PV P + + R     
Sbjct: 65  RGGEDGTLQGMLELLGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124

Query: 116 -FTMDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
             + + +  IS    P ++KP + GSS+G+  + ++ ++   L  S ++ H D++LIE++
Sbjct: 125 GLSEEQKARISALGLPLIVKPSREGSSVGMTKVVEENALQGAL--SLAFQHDDEILIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI 219
           + G E T  ++G+  L    I  P   FY YE KY S  + +  PA +
Sbjct: 183 LCGPEFTVAIVGEEILPSIRIQ-PAGTFYDYEAKYLSDETQYFCPAGL 229


>gi|254967038|gb|ACT97555.1| putative D-alanine-D-alanine ligase [uncultured organism]
          Length = 366

 Score =  138 bits (348), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 82/246 (33%), Positives = 132/246 (53%), Gaps = 15/246 (6%)

Query: 49  LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
           ++ D+   VLHG +GEDG VQ +LEL  IPY   G+LASA+ MDK  +  +  + G+P  
Sbjct: 101 VRADVVIPVLHGLWGEDGTVQGLLELAGIPYVGCGVLASAVCMDKAVANAMFDASGIPHT 160

Query: 109 PSILVNRFTMDSQ---------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             +   R+ ++             +  P  +KP   GSS+GI   K      L      +
Sbjct: 161 KWLSATRWEIECDPEGVCDGVIAKLGWPIFVKPANAGSSVGIT--KAHDRTELKEAIRLA 218

Query: 160 WNHGDQLLIEQYVDGIELTCGVMGD---ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216
             +  +++ E +VDG E+ C V+G     S    EI +  ++FY+Y+ KY +  S  V+P
Sbjct: 219 LANDRKVVFEAFVDGHEVECAVIGSDPAVSTRPGEI-LAGAEFYTYDDKYKNGVSQVVIP 277

Query: 217 AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPE 276
           AK+P +   EV+  A +A+ A+GC G++R DF  +  + +V   EIN  PG TP+S++P+
Sbjct: 278 AKLPEEKLDEVKTYAAMAYTALGCEGLARCDFFVEKNTGRVLINEINTLPGFTPISMYPK 337

Query: 277 MAAYAG 282
           +  + G
Sbjct: 338 LMEHEG 343


>gi|297191831|ref|ZP_06909229.1| D-alanine-D-alanine ligase [Streptomyces pristinaespiralis ATCC
           25486]
 gi|197722023|gb|EDY65931.1| D-alanine-D-alanine ligase [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 385

 Score =  138 bits (348), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 92/262 (35%), Positives = 135/262 (51%), Gaps = 21/262 (8%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D  F +LHG +GEDG +Q +LEL  +PY  SG+LASA+  DK   K+V  S G+PV P  
Sbjct: 120 DAVFPMLHGPYGEDGTLQGLLELSGVPYVGSGVLASAVGQDKEYMKRVFVSFGLPVGPYE 179

Query: 112 LV------------NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
           ++             +  +D       P  IKP +GGSS+GI   K D    LD   + +
Sbjct: 180 VIRPREWANDPAAARKKIVDFAGEHGWPLFIKPARGGSSMGI--TKVDDLAGLDDAIAEA 237

Query: 160 WNHGDQLLIEQYVDGIELTCGVMG-----DASLDVTEIAVPKSDFYSYELKYSSLNSTHV 214
             H  ++L+E  + G E+ CGV+       AS+      V   DFY +E KY   ++  +
Sbjct: 238 QRHDPKILVESLLRGREIECGVLEFEDGPRASVPAEIPPVTSHDFYDFEAKYID-SAAGL 296

Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274
           +PA +  +   EVQRLA  A  A  C G+ R+DF        V   EIN  PG TP+S++
Sbjct: 297 VPAPLTDEQTAEVQRLAVAAFDAASCEGLVRADFFLTEDGEFVI-NEINTMPGFTPISMY 355

Query: 275 PEMAAYAGYSFRELLLWMVEDA 296
           P M   +G ++ EL+  +++ A
Sbjct: 356 PRMWQESGVAYTELVDRLIQAA 377


>gi|221632100|ref|YP_002521321.1| D-alanine--D-alanine ligase [Thermomicrobium roseum DSM 5159]
 gi|221156428|gb|ACM05555.1| D-alanine--D-alanine ligase [Thermomicrobium roseum DSM 5159]
          Length = 372

 Score =  138 bits (348), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 99/350 (28%), Positives = 170/350 (48%), Gaps = 58/350 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLA------------- 47
           +AV+ GG S E +VSL S +A    ++   F++  + + R    ++              
Sbjct: 7   VAVIFGGQSGEHDVSLRSARAILRHIDRERFEIVPVGITREGRWLIGGDPLRELATASRL 66

Query: 48  --HLKP--------------------------DLAFNVLHGNFGEDGLVQAILELLEIPY 79
              L+P                          D+ F VLHG +GEDG +Q +LEL  IPY
Sbjct: 67  PLELEPVSSGAGSAPATGESALALPGSLPGEIDVVFPVLHGPYGEDGTIQGLLELAGIPY 126

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---------ISPPYVI 130
              G+LASA++MDK  +K++ +S G+     I         QH          +  P  +
Sbjct: 127 VGCGVLASAVAMDKPTAKRLFASVGLEQARWIAFTWHEWQCQHQTLLARIERELGYPCFV 186

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD----AS 186
           KP   GSS+G+   ++ + +   +  +S ++   ++++E+ +D  EL   V+G+    AS
Sbjct: 187 KPANLGSSVGVSKARRREELLAAIELASRYDR--RIVVEEAIDARELEVSVLGNEEPVAS 244

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRS 246
           + V EI VP  +FY YE KY   +S  ++PA I  +    V+R+A  A + I   G++R 
Sbjct: 245 I-VGEI-VPSREFYDYEAKYIDPHSQLLIPAPISEEQAATVRRMALEAFRVIDGAGMARV 302

Query: 247 DFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           DF  +  + ++   E+N  PG T +S++P++   +G  FR+L+  ++E A
Sbjct: 303 DFFLERSTGRILINEVNTIPGFTAISMYPKLWEASGLCFRDLITRLIELA 352


>gi|184200683|ref|YP_001854890.1| D-alanine--D-alanine ligase [Kocuria rhizophila DC2201]
 gi|229485959|sp|B2GFL1|DDL_KOCRD RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|183580913|dbj|BAG29384.1| D-alanine--D-alanine ligase [Kocuria rhizophila DC2201]
          Length = 383

 Score =  138 bits (348), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 87/253 (34%), Positives = 129/253 (50%), Gaps = 18/253 (7%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D  F +LHG FGEDG +Q +LEL ++PY   G+ ASA+ MDK   K    + G+ V P  
Sbjct: 119 DAVFPLLHGPFGEDGTLQGMLELADLPYVGCGVAASAIGMDKHFMKLAFQAAGLEVGPYT 178

Query: 112 LVNRFTMDSQHL--------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
           +V+  T  +  L        +  P  +KP + GSS GI   + D+   LD   +++  H 
Sbjct: 179 VVHDRTWRTDPLGVREAVAELGFPVFVKPARAGSSFGI--TRVDEPSQLDAAIATAREHD 236

Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVT------EIAVPKSDFYSYELKY-SSLNSTHVLP 216
            +L++E  +DG E+ C V+G    D        EI V     Y +E KY  S  +T   P
Sbjct: 237 LKLVVEAGIDGREIECAVLGGHGTDEARASLPGEIEVHGHALYDFEAKYVESDGATLSCP 296

Query: 217 AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPE 276
           A++P  +   ++R A  A  A+   G+SR DF F     +V   EIN  PG TP+S++P 
Sbjct: 297 ARLPEHVIDTLRRDAVRAFHAVDGEGLSRCDF-FVTADERVLINEINTMPGFTPISMYPR 355

Query: 277 MAAYAGYSFRELL 289
           M A +G  +  L+
Sbjct: 356 MWAASGIDYSALI 368


>gi|254967070|gb|ACT97573.1| putative D-alanine-D-alanine ligase [uncultured organism]
          Length = 352

 Score =  138 bits (348), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 104/343 (30%), Positives = 160/343 (46%), Gaps = 55/343 (16%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSV----------------GLVL 46
           VL GG+S+ER+VSL+S       L + G     +DV   +                GL +
Sbjct: 5   VLAGGLSTERDVSLASAAGICRTLLERGHDAFLLDVFLGLENAPEDLEDVFTMPGHGLEI 64

Query: 47  A----HLKPDLA----------------------------FNVLHGNFGEDGLVQAILEL 74
           A      +PDLA                            F  LHG  GE+G +QA  +L
Sbjct: 65  AKNISEEEPDLAAVKASRPDQSDCFLGPNVIELCRLADITFLGLHGGEGENGKLQATFDL 124

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---ISPPYVIK 131
           L I YT    L  A++MDK  +KQV    G+     + +++   D       +S P V+K
Sbjct: 125 LGIRYTGPDSLGCAVAMDKGFTKQVFLQAGIDTPDGVCLHKNDADRSLASLGLSLPVVVK 184

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P  GGSS+G+ ++  +     D L+  S+ + D+++IE ++ G E  CG++   +L   E
Sbjct: 185 PCSGGSSIGVYIVNTEDEYK-DALE-KSFRYEDEIVIETFIKGREFACGIIDGEALPPIE 242

Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
           I +PK+ F+ Y  KY    +  V PA IP DI + +  L   A  A+     SR+DFL D
Sbjct: 243 I-IPKTGFFDYANKYQDGATDEVCPADIPKDIEERMMELTVRAFHALKLNVYSRADFLLD 301

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
                ++ LE+N  PGMT  S+ P+ A  AG  + +L   +++
Sbjct: 302 D-QGSLYCLEMNTLPGMTAASLLPKEAKVAGIEYGDLCELIIQ 343


>gi|55981556|ref|YP_144853.1| D-alanyl-alanine synthetase A [Thermus thermophilus HB8]
 gi|81363879|sp|Q5SHZ3|DDL_THET8 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|160286257|pdb|2YZM|A Chain A, Structure Of D-Alanine:d-Alanine Ligase With Substrate
           From Thermus Thermophilus Hb8
 gi|160286258|pdb|2YZM|B Chain B, Structure Of D-Alanine:d-Alanine Ligase With Substrate
           From Thermus Thermophilus Hb8
 gi|160286259|pdb|2YZM|C Chain C, Structure Of D-Alanine:d-Alanine Ligase With Substrate
           From Thermus Thermophilus Hb8
 gi|160286261|pdb|2YZN|A Chain A, Crystal Structure Of D-Alanine:d-Alanine Ligase With
           Amppnp From Thermus Thermophilus Hb8.
 gi|160286262|pdb|2YZN|B Chain B, Crystal Structure Of D-Alanine:d-Alanine Ligase With
           Amppnp From Thermus Thermophilus Hb8.
 gi|160286263|pdb|2YZN|C Chain C, Crystal Structure Of D-Alanine:d-Alanine Ligase With
           Amppnp From Thermus Thermophilus Hb8.
 gi|189096109|pdb|2ZDG|A Chain A, Crystal Structure Of D-Alanine:d-Alanine Ligase With Adp
           From Thermus Thermophius Hb8
 gi|189096110|pdb|2ZDG|B Chain B, Crystal Structure Of D-Alanine:d-Alanine Ligase With Adp
           From Thermus Thermophius Hb8
 gi|189096111|pdb|2ZDG|C Chain C, Crystal Structure Of D-Alanine:d-Alanine Ligase With Adp
           From Thermus Thermophius Hb8
 gi|189096112|pdb|2ZDG|D Chain D, Crystal Structure Of D-Alanine:d-Alanine Ligase With Adp
           From Thermus Thermophius Hb8
 gi|189096113|pdb|2ZDH|A Chain A, Crystal Structure Of D-Alanine:d-Alanine Ligase With Adp
           And D-Alanine From Thermus Thermophius Hb8
 gi|189096114|pdb|2ZDH|B Chain B, Crystal Structure Of D-Alanine:d-Alanine Ligase With Adp
           And D-Alanine From Thermus Thermophius Hb8
 gi|189096115|pdb|2ZDH|C Chain C, Crystal Structure Of D-Alanine:d-Alanine Ligase With Adp
           And D-Alanine From Thermus Thermophius Hb8
 gi|189096116|pdb|2ZDH|D Chain D, Crystal Structure Of D-Alanine:d-Alanine Ligase With Adp
           And D-Alanine From Thermus Thermophius Hb8
 gi|189096117|pdb|2ZDQ|A Chain A, Crystal Structure Of D-Alanine:d-Alanine Ligase With Atp
           And D-Alanine:d-Alanine From Thermus Thermophius Hb8
 gi|189096118|pdb|2ZDQ|B Chain B, Crystal Structure Of D-Alanine:d-Alanine Ligase With Atp
           And D-Alanine:d-Alanine From Thermus Thermophius Hb8
 gi|55772969|dbj|BAD71410.1| D-alanine--D-alanine ligase [Thermus thermophilus HB8]
 gi|74381947|emb|CAJ29881.1| D-alanine:D-alanine ligase [Thermus caldophilus]
          Length = 319

 Score =  138 bits (348), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 85/248 (34%), Positives = 140/248 (56%), Gaps = 8/248 (3%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+ F +LHG FGEDG VQ  LELL  PY  +G+ ASAL MDK  SK+V++  GVPV P +
Sbjct: 75  DVVFPLLHGRFGEDGTVQGFLELLGKPYVGAGVAASALCMDKDLSKRVLAQAGVPVVPWV 134

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
            V +           P+ +KP   GSS+GI  +++ Q   L+   + ++ + ++ ++E+ 
Sbjct: 135 AVRKGEPPVVPFDP-PFFVKPANTGSSVGISRVERFQD--LEAALALAFRYDEKAVVEKA 191

Query: 172 VDGI-ELTCGVMGDASLDVTEIAVPKSD--FYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           +  + EL  GV+G+   + + +   + +  FY YE KY+   +  ++PA +     + VQ
Sbjct: 192 LSPVRELEVGVLGNVFGEASPVGEVRYEAPFYDYETKYTPGRAELLIPAPLDPGTQETVQ 251

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
            LA  A++ +G RG++R DF       +++  E+N  PG TP S++P +    G ++ EL
Sbjct: 252 ELALKAYKVLGVRGMARVDFFLA--EGELYLNELNTIPGFTPTSMYPRLFEAGGVAYPEL 309

Query: 289 LLWMVEDA 296
           L  +VE A
Sbjct: 310 LRRLVELA 317


>gi|148272526|ref|YP_001222087.1| D-alanine-D-alanine ligase [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
 gi|147830456|emb|CAN01391.1| D-alanine-D-alanine ligase [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
          Length = 369

 Score =  138 bits (348), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 95/280 (33%), Positives = 146/280 (52%), Gaps = 30/280 (10%)

Query: 29  AGFKVSQIDVD---RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
           AG +++  D D   RS+G V      D+ F +LHG  GEDG VQ +LEL  +PY  SG+L
Sbjct: 84  AGRELTVRDADGAERSLGRV------DVVFPILHGTQGEDGTVQGMLELAGLPYVGSGVL 137

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRF--------TMDSQHLISPPYVIKPLKGGS 137
           ASAL MDK  +K V+ + G+ V P I V+R           +    +  P  +KP + GS
Sbjct: 138 ASALGMDKHYAKTVLRAAGIEVAPWITVSRHEWAADPGGVRERAAALGLPAFVKPARAGS 197

Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA-----SLDVT-E 191
           S+G+  +  D    LD     ++   D++L+E  + G E+ C ++ +      S  V  E
Sbjct: 198 SVGVSRVSADAG--LDSALEVAFREDDRVLVESGLVGREVECAILDEGPGREPSASVAGE 255

Query: 192 IAVPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
           I V   DFY ++ KY   +    V PA +      E++ L+  A +A+  RG++R DF  
Sbjct: 256 IVVSGRDFYDFDAKYLGADGIDLVCPADVTDAELAELRELSIRAFRAVDARGLARVDFF- 314

Query: 251 DPLSRKVFWL-EINVQPGMTPVSIFPEMAAYAGYSFRELL 289
             L+ + F L EIN  PG TP+S+FP     +G ++ +L+
Sbjct: 315 --LTAEGFVLNEINTMPGFTPISMFPACWEASGLAYPDLI 352


>gi|56964671|ref|YP_176402.1| D-alanyl-alanine synthetase A [Bacillus clausii KSM-K16]
 gi|81365565|sp|Q5WDW9|DDL_BACSK RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|56910914|dbj|BAD65441.1| D-alanine--D-alanine ligase A [Bacillus clausii KSM-K16]
          Length = 368

 Score =  138 bits (348), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 92/346 (26%), Positives = 169/346 (48%), Gaps = 55/346 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------------------- 40
           + ++ GG S+E EVSL S K    A++   F V+ I +D+                    
Sbjct: 6   VGIIFGGKSAEHEVSLQSAKNIVEAIDKDRFDVTLIGIDKQGQWHINEASNFLLNADNPA 65

Query: 41  -------SVGLVLAHLKPD----------------LAFNVLHGNFGEDGLVQAILELLEI 77
                  + G+ L   K D                + F ++HG  GEDG +Q +  L  +
Sbjct: 66  LIELNKSNQGVALIPGKEDRQLVGTANQSVLDQLDVVFPIVHGTLGEDGSLQGMFRLANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF---TMDSQHL---ISPPYVIK 131
           P+  S +L SA+SMDK  +K+++   G+ V   +   R    T+D + +   +  P  IK
Sbjct: 126 PFVGSNVLGSAVSMDKDIAKRLLQGAGLHVASGLTFTRAAKETIDFESIADQLGLPLFIK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+     +      + ++ S++H  ++LIE  + G E+ C V+G+     + 
Sbjct: 186 PANQGSSVGVNKATTEAEFTAAIEEAFSYDH--KVLIEAAIKGREIECAVLGNDYPKAST 243

Query: 192 IA--VPKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               +P+  FYSY+ KY   +   + +PA +P D+ + +Q +A  A++ + C G++R D 
Sbjct: 244 CGEILPQDGFYSYDAKYIDEDGAKLAIPADLPEDVNRRIQDIAIQAYKTLNCEGLARVD- 302

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           +F   + +V   E+N  PG T +S++P++   +G S+++L+  ++E
Sbjct: 303 VFLTETGEVIINEVNTLPGFTKISMYPKLWEASGVSYQDLITTLIE 348


>gi|152965331|ref|YP_001361115.1| D-alanine--D-alanine ligase [Kineococcus radiotolerans SRS30216]
 gi|190359142|sp|A6W7R2|DDL_KINRD RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|151359848|gb|ABS02851.1| D-alanine--D-alanine ligase [Kineococcus radiotolerans SRS30216]
          Length = 376

 Score =  138 bits (348), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 87/261 (33%), Positives = 134/261 (51%), Gaps = 20/261 (7%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-- 109
           D+   +LHG FGEDG +Q +LEL +  Y  SG+LASA  MDK   K +++  G+PV P  
Sbjct: 108 DVVLPLLHGPFGEDGTLQGLLELSDTRYVGSGVLASAAGMDKQVMKLLLAGQGLPVGPWT 167

Query: 110 SILVNRFTMDSQHLISP------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
           S    R+  D   +++       P  +KP + GSS+GI  +   + +   + ++ S  H 
Sbjct: 168 SFRARRWDTDRDGVVAEVEALGYPVFVKPARAGSSIGITRVTSREGLAAAVAEAVS--HD 225

Query: 164 DQLLIEQYVDGIELTCGVMGD-------ASLDVTEIAVPKSDFYSYELKY-SSLNSTHVL 215
            ++++E  + G E+ CGV+ D        SL      V   DFY +E KY  S N     
Sbjct: 226 PKVVVEAALVGREIECGVLEDLDGGEPLTSLPGEVEVVGGHDFYDFEAKYLDSGNVRLTC 285

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK--VFWLEINVQPGMTPVSI 273
           PA +P D+   V+R A    +A+G  G++R D   DP   +  +   EIN  PG TP S+
Sbjct: 286 PADLPDDVVAAVRRTAVRVFEAMGAEGLARVDLFVDPARGEDGIVVNEINTMPGFTPFSM 345

Query: 274 FPEMAAYAGYSFRELLLWMVE 294
           +P M A  G  + EL+  +++
Sbjct: 346 YPRMWAATGVDYPELVHRLIQ 366


>gi|269958139|ref|YP_003327928.1| D-alanine/D-alanine ligase [Xylanimonas cellulosilytica DSM 15894]
 gi|269306820|gb|ACZ32370.1| D-alanine/D-alanine ligase [Xylanimonas cellulosilytica DSM 15894]
          Length = 349

 Score =  138 bits (348), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 103/317 (32%), Positives = 158/317 (49%), Gaps = 35/317 (11%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62
           VL GG+S ER+VSL SG+  A AL   G  V+  DVD  +   L   +PD+ + +LHG  
Sbjct: 41  VLAGGLSHERDVSLRSGRRVAEALRSVGVDVAVHDVDAQLLRYLDEHRPDVVWPLLHGAG 100

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP------------- 109
           GEDG ++ +LEL  +PY  +G  AS L+ DK  +K+ + + G+                 
Sbjct: 101 GEDGSLRDVLELAGVPYVGTGPRASRLAWDKPIAKERLQTAGLATPEWLTLPQELFRDLG 160

Query: 110 -----SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164
                SI+  RF +        P V+KP +GGS+LG+  +     +   ++    + +GD
Sbjct: 161 AQGVLSIVAERFGL--------PVVVKPTRGGSALGVTRVTSKDGLARAMVD--CFAYGD 210

Query: 165 QLLIEQYVDGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
             LIE+ VDG+E+   V+    G  +L   EI V     Y ++ +Y+     +  PA++ 
Sbjct: 211 SALIERAVDGVEIAVSVIDGMDGPVALPAVEIIVDGP--YDFDARYNPGRVEYFAPARLS 268

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280
            D    V  +A  AHQA+  R +SR+D +          LE+NV PGMT  S+ P+ A  
Sbjct: 269 PDQAAHVAGVAVAAHQALDLRHLSRTDLILQ-TDGTAQVLEVNVAPGMTETSLLPQAAVA 327

Query: 281 AGYSFRELLLWMVEDAS 297
           AG+    L   +VE A+
Sbjct: 328 AGHDLGTLYRQVVEHAA 344


>gi|294627726|ref|ZP_06706308.1| D-alanylalanine synthetase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
 gi|292598078|gb|EFF42233.1| D-alanylalanine synthetase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
          Length = 265

 Score =  138 bits (348), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 92/257 (35%), Positives = 137/257 (53%), Gaps = 14/257 (5%)

Query: 44  LVLAHLKPDLAFNVL--HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           LV  H   D  FNVL  H   GED +VQ + E   +PYT S +L SALSMDK+R+KQV  
Sbjct: 11  LVAQHF--DRVFNVLLGHNGGGEDDIVQGLTEPFGVPYTGSDVLGSALSMDKIRTKQVWL 68

Query: 102 SCGV--PVCPSILVNRFTMD---SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
           S G+  P    +       D   +   I  P ++KP   GSS+G+  +     +   +  
Sbjct: 69  SLGLSTPRYARLAAGASAEDIHAAARQIGLPIIVKPANEGSSVGVSRVFDQAQLEEAVTL 128

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216
           ++ ++    LL+EQ ++G ELT  V+GD +L    I VPK  +Y Y  KY + ++ ++ P
Sbjct: 129 AARYDGA--LLMEQLIEGDELTVAVLGDTALPSIRI-VPKGQWYDYNAKYIAEDTQYLCP 185

Query: 217 AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPE 276
             +  +   ++++LA  A  A GCRG  R D + D  S +++ LE+N  PGMT  S+ P+
Sbjct: 186 G-LEGEAEAQIRQLALDAFHAAGCRGWGRVDVMRDGSSGQLYLLEVNTAPGMTSHSLVPK 244

Query: 277 MAAYAGYSFRELLLWMV 293
            A   G  F E L+W V
Sbjct: 245 AARQLGIDF-ETLVWRV 260


>gi|296393410|ref|YP_003658294.1| D-alanine/D-alanine ligase [Segniliparus rotundus DSM 44985]
 gi|296180557|gb|ADG97463.1| D-alanine/D-alanine ligase [Segniliparus rotundus DSM 44985]
          Length = 357

 Score =  138 bits (348), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 97/293 (33%), Positives = 153/293 (52%), Gaps = 28/293 (9%)

Query: 13  EVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAIL 72
            V+L+ G+A A  L             R VG  LA  + D+ F VLHG +GEDG VQ + 
Sbjct: 76  RVALAVGRAGAGEL-------------RFVGGELAA-QVDVVFPVLHGPYGEDGTVQGLF 121

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-SILVNRFTMDSQHL---ISPPY 128
           EL  +PY   G+ ASA  MDK   K ++   G+PV P ++L      D+  L   +S P 
Sbjct: 122 ELANLPYAGCGVFASAACMDKAHMKALLREGGLPVGPYAVLRPGDDADAAALGERLSLPV 181

Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM-----G 183
            +KP +GGSSLG++ + + + +P  L  +  ++   ++L+E  + G E+ C V+      
Sbjct: 182 FVKPARGGSSLGVVKVDRWEDLPHALATARKYDP--KVLVEAGIAGREIECAVLEFPDGR 239

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
            A+  + EI VP++  Y +E KY +  +   +PAK+   +  E++ LA  A + + C G+
Sbjct: 240 VAAGALGEIVVPET--YDFETKYLNNTAQLQVPAKLDESVASEIRALAVRAFRVMDCSGL 297

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           SR DF      R V   E+N  PG T  S++P+M   AG  +  LL  +++ A
Sbjct: 298 SRVDFFLTQDGRPVVN-ELNTLPGFTTSSLYPKMWERAGLDYPTLLSTLIDTA 349


>gi|291549120|emb|CBL25382.1| D-alanine--D-alanine ligase [Ruminococcus torques L2-14]
          Length = 350

 Score =  138 bits (347), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 104/343 (30%), Positives = 160/343 (46%), Gaps = 55/343 (16%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV------------------DRSVGL 44
           VL GG+S+ER+VSLSS       L + G     +DV                  D  + +
Sbjct: 5   VLAGGLSTERDVSLSSAAGICRTLVEKGHDAFLLDVFMGLENAPENLEDVFTLPDHGLEI 64

Query: 45  V--LAHLKPDL----------------------------AFNVLHGNFGEDGLVQAILEL 74
           V  ++  +PDL                             F  LHG  GE+G +QA  +L
Sbjct: 65  VKNISTEEPDLEAVKASRPDQSDCFFGPNVIELCRLADITFLGLHGGEGENGKLQASFDL 124

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGV--PVCPSILVNRFTMDSQHL-ISPPYVIK 131
           L I YT    L  A++M K  +KQ+    GV  P   +I  N      Q L ++ P V+K
Sbjct: 125 LGIKYTGPDSLGCAVAMHKGVAKQIFLESGVDTPGGGTIYKNSEDQSYQSLGLTLPVVVK 184

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P  GGSS+G+ ++  D+     L    S+ + D+L++E Y+ G E  CG++   +L   E
Sbjct: 185 PCSGGSSIGVYIVNTDEEYAEAL--KKSFRYEDELVVEPYIKGREFACGIIDGTALPPIE 242

Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
           I +PK+ F+ Y  KY    ++ V PA IP ++ + ++ L   A  A+     SR+DFL D
Sbjct: 243 I-IPKTGFFDYANKYQDGATSEVCPADIPEEVAERMKELTVKAFNALKLNVYSRADFLLD 301

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
                +F LE+N  PGMT  S+ P+ A   G  + +L   +++
Sbjct: 302 A-EGNLFCLEMNTLPGMTSASLLPKEAKVYGIEYGDLCELIIK 343


>gi|225873801|ref|YP_002755260.1| D-alanine--D-alanine ligase [Acidobacterium capsulatum ATCC 51196]
 gi|225792586|gb|ACO32676.1| D-alanine--D-alanine ligase [Acidobacterium capsulatum ATCC 51196]
          Length = 400

 Score =  138 bits (347), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 84/269 (31%), Positives = 144/269 (53%), Gaps = 19/269 (7%)

Query: 49  LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
           L+ D+ F VLHG FGEDG +Q +LEL  I Y  SG+L SA  MDK   K++ +S  +P+ 
Sbjct: 124 LQLDIIFPVLHGTFGEDGTIQGLLELAGIAYVGSGVLGSATGMDKDIMKRLFASAKLPIT 183

Query: 109 PSILV---------NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             +            + T   +  +  P  +KP   GSS+GI   +  + +   +  ++ 
Sbjct: 184 KHVTFLRPEWEKNPRKITTQIEAALKYPVFVKPANLGSSVGISKARDRKELKAAIELAAG 243

Query: 160 WNHGDQLLIEQYVDGI-----ELTCGVMGDASLDVTEIA--VPKSDFYSYELKYSSLNST 212
           ++   ++++EQ V G      EL   V+G+ + + + +   VP  +FY YE KY S  S 
Sbjct: 244 FDR--KIVVEQGVGGKRGKARELEVAVLGNNAPEASVVGEIVPGKEFYDYEAKYLSEGSV 301

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP-LSRKVFWLEINVQPGMTPV 271
            ++PAK+     K+++ +A  A +A  C G++R DFL +P  S +++  EIN  PG T +
Sbjct: 302 PIIPAKLTKAQSKQIREMAVAAFRACDCAGLARVDFLMEPGTSGRIYLNEINTLPGFTSI 361

Query: 272 SIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           S++P++   +G  + +L+  ++E A   R
Sbjct: 362 SMYPKLWEASGLPYSKLIDRLIELARERR 390


>gi|254967057|gb|ACT97566.1| putative D-alanyl-alanine synthetase A [uncultured organism]
          Length = 324

 Score =  138 bits (347), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 94/325 (28%), Positives = 162/325 (49%), Gaps = 33/325 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKV-----------------SQIDVDR--- 40
           +A++ GG +SE EVSL S +   S ++   + +                 ++  VDR   
Sbjct: 5   IAIVCGGDTSEFEVSLRSAQGIYSFIDKERYTLYIVEMRGTDWHVQLPDGTKTPVDRNDF 64

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           S  L  A +  D A+  +HG  GEDG +Q   ++L IPY+  G+LA+AL+ DK    Q +
Sbjct: 65  SFRLDGAKVVFDFAYITIHGTPGEDGRLQGYFDMLHIPYSCCGVLAAALTYDKFACNQYL 124

Query: 101 SSCGVPVCPSILVNRFTMDSQH----LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
            + GV +  S+L+ +    S       I  P  IKP  GGSS G+  +   + I   +  
Sbjct: 125 KAFGVRIADSLLLRQGQSVSDEDVIGKIGLPCFIKPSLGGSSFGVTKVNVKEQIHPAI-- 182

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDAS----LDVTEIAVPKSDFYSYELKYSSLNST 212
           + ++    ++L+E ++DG+E+TCG            +TE+ V  ++++ Y+ KY+   S 
Sbjct: 183 AKAFAEAKEVLVEAFMDGMEITCGCYKTKEKSVVFPITEV-VSHNEYFDYKAKYNG-ESD 240

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
            + PA+IP ++   VQ+L    +  +G  GI R D++      K+  LE+N  PGMT  S
Sbjct: 241 EITPARIPDELRDRVQKLTSAIYDILGASGIIRVDYIITE-GEKINLLEVNTTPGMTATS 299

Query: 273 IFPEMAAYAGYSFRELLLWMVEDAS 297
             P+    A    ++++  ++E+ S
Sbjct: 300 FIPQQVRAANLEIKDVMTDIIENQS 324


>gi|309792366|ref|ZP_07686834.1| D-alanine--D-alanine ligase [Oscillochloris trichoides DG6]
 gi|308225587|gb|EFO79347.1| D-alanine--D-alanine ligase [Oscillochloris trichoides DG6]
          Length = 365

 Score =  138 bits (347), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 105/350 (30%), Positives = 169/350 (48%), Gaps = 64/350 (18%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKV--------------------------- 33
           +AVL GG S E EVSL S +A  +AL+   ++V                           
Sbjct: 5   VAVLFGGQSGEHEVSLVSAQAVIAALDPTRYRVVPVGISKDGRWLAGSGAMAALVAAADS 64

Query: 34  ----------------SQIDVDRSVG---LVLAHLKP---DLAFNVLHGNFGEDGLVQAI 71
                            +++V  + G   + +A L P   D+ F VLHG  GEDG VQ +
Sbjct: 65  TRLPAGAHYPQEDLEADEVEVAHTGGAGQVSVARLLPPGVDVVFPVLHGPRGEDGTVQGL 124

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QH 122
           LEL  + Y   G+ ASA+ MDK   K   ++ G+P+ P +LV R              + 
Sbjct: 125 LELAGVAYVGCGVAASAVGMDKALMKAAFAAAGLPLLPWLLVRRHEWQQNPEATYNQIEA 184

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            ++ P  +KP   GSS+G+   K    +   L +++ ++   ++++EQ +   E+   V+
Sbjct: 185 ALTYPVFVKPANMGSSVGVSKAKDRDGLAEALAEAARYDR--RIVVEQGIPAREIEVSVL 242

Query: 183 GDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
           G+   +V+   E+ VP  ++Y Y  KY    S   +PA I  D+ +EV+RLA  A Q+I 
Sbjct: 243 GNDEPEVSIPGEV-VPSGEWYDYHAKYLGGQSAIHIPAPISADLSEEVRRLALRAFQSID 301

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
             G++R DFL D  S +++  E+N  PG TP+S++ +M A +G  +  LL
Sbjct: 302 GAGLARVDFLLDKESGQLWINEVNTMPGFTPISMYAKMWAASGLDYPTLL 351


>gi|158321878|ref|YP_001514385.1| D-alanine--D-alanine ligase [Alkaliphilus oremlandii OhILAs]
 gi|158142077|gb|ABW20389.1| D-alanine--D-alanine ligase [Alkaliphilus oremlandii OhILAs]
          Length = 349

 Score =  138 bits (347), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 99/343 (28%), Positives = 167/343 (48%), Gaps = 53/343 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------------------- 38
           +AV+ GG SSE EVSL S  A    L+   + V +I +                      
Sbjct: 6   VAVIFGGESSEYEVSLKSASAVMENLDIEKYDVIKIGITRDGKWLRYNGTLDKIKENTWF 65

Query: 39  ---------------DRSVGLV----LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPY 79
                          DR +  +      H + D+ F VLHG  GEDG +Q + E+  IPY
Sbjct: 66  LDGSCRQIMLSPNKGDRKIIEIHPNEFVHTQIDIVFPVLHGRNGEDGTLQGLFEITGIPY 125

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ-----HLISPPYVIKPLK 134
               + AS++ +DK  + ++V   G  V  SI ++  T + +       +  P  +KP +
Sbjct: 126 VGCDVAASSICIDKDYAHKIVQYAGFDVPQSIAIDNRTKEDEINKFAENVGYPIYVKPSR 185

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL---DVTE 191
            GSS+G I   ++ S  +  ++++    G ++++E+ ++G E+ C ++G+  L    V E
Sbjct: 186 EGSSIG-ITKAENHSDLMGGIEAALKLDG-KVVLEENIEGFEVGCAILGNDDLIVGTVDE 243

Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
           I VP   F+ +  KY+  NS   LPA+I  D+ + ++ +    ++A+GC G+SR D   D
Sbjct: 244 IEVPNG-FFDFTEKYTLQNSKIHLPARIDQDLSERIKEIGKGIYKALGCSGLSRVDLFVD 302

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
              R VF  E+N  PG T  S FP M  +AG ++R++L  +++
Sbjct: 303 KNHRIVFN-EVNTLPGFTTGSRFPNMLLHAGIAYRDILDKLID 344


>gi|289450558|ref|YP_003474691.1| D-ala D-ala ligase N-terminal domain-containing protein
           [Clostridiales genomosp. BVAB3 str. UPII9-5]
 gi|289185105|gb|ADC91530.1| D-ala D-ala ligase N-terminal domain protein [Clostridiales
           genomosp. BVAB3 str. UPII9-5]
          Length = 371

 Score =  138 bits (347), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 89/278 (32%), Positives = 147/278 (52%), Gaps = 21/278 (7%)

Query: 30  GFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
           G K+ ++   R          P++ F  +HG   EDG +Q  L + +IPY  SG+LASAL
Sbjct: 77  GLKIKEVFNPRRFFTYFFGKNPEVIFPAVHGINCEDGTLQGFLNMTDIPYVGSGVLASAL 136

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNR--FTMDS----------QHLISPPYVIKPLKGGS 137
            M+K+ +KQ+ ++  +PV P  +V R     DS          + +++ P  +KP  GGS
Sbjct: 137 GMNKIFAKQIWAANKLPVVPYYVVTRDDLAKDSIGLPETSAAVEKVLTYPIFLKPASGGS 196

Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD---VTEIAV 194
           S+G         +   L + S ++   ++L+EQY+   EL   V+G+       V EI +
Sbjct: 197 SVGTFKAGNRSELVAALGEVSKFDR--EILLEQYIPARELEVAVLGNLQPQAPMVGEILM 254

Query: 195 PKSD--FYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
            ++D  FY YE KY +  ++ + LPA +P D+ + +  LA  A++ +GC+G++R DF  D
Sbjct: 255 -QADVAFYDYETKYFAAGASSLALPADLPTDLAERILNLAQKAYKVLGCKGMARVDFFLD 313

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
             S  ++  EIN  PG T  S++P+  A AG +   L+
Sbjct: 314 RCSGALYLNEINSLPGFTATSLYPQAWAKAGINLPALV 351


>gi|54026176|ref|YP_120418.1| D-alanyl-alanine synthetase A [Nocardia farcinica IFM 10152]
 gi|81373693|sp|Q5YRY7|DDL_NOCFA RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|54017684|dbj|BAD59054.1| putative D-alanine-D-alanine ligase [Nocardia farcinica IFM 10152]
          Length = 363

 Score =  138 bits (347), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 98/302 (32%), Positives = 159/302 (52%), Gaps = 19/302 (6%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDG 66
           G+S E   S+ +G    +   D       + +D + G VL  +  D+ F +LHG FGEDG
Sbjct: 61  GLSHEALPSVDAGGTALTLTADPTRGGELVALDDA-GAVLGTV--DVVFPILHGPFGEDG 117

Query: 67  LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN----RFTMDSQH 122
            +Q +LEL  +PY   G+LASA  MDK  +K+++++ G+PV   +++       T + + 
Sbjct: 118 TLQGMLELAGVPYVGPGVLASAAGMDKEFTKKLLAAEGLPVGTQVVLRPGTATLTEEQRE 177

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            +  P  +KP + GSS+GI   K D    LD   +++  H  ++++E  + G E+ CGV+
Sbjct: 178 RLGLPVFVKPARAGSSIGI--TKVDDWAALDTAIAAAREHDPKVIVEAGIVGREVECGVL 235

Query: 183 ----GDASLDV-TEIAVPKSD---FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
               G  S  V  EI +P+ D   FY ++ KY        +PAK+  DI ++V+ LA  A
Sbjct: 236 EFPDGRISASVLAEIRMPEGDGPQFYDFDTKYLDDVCEFDVPAKLDDDIAEQVRELAVRA 295

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            QA+ C+G++R DF     +      EIN  PG T +S++P M    G  +  L+  ++E
Sbjct: 296 FQALDCQGLARVDFFV--TADGPVINEINTMPGFTSISMYPRMWEATGIDYGTLVSTLIE 353

Query: 295 DA 296
            A
Sbjct: 354 TA 355


>gi|197302342|ref|ZP_03167401.1| hypothetical protein RUMLAC_01073 [Ruminococcus lactaris ATCC
           29176]
 gi|197298773|gb|EDY33314.1| hypothetical protein RUMLAC_01073 [Ruminococcus lactaris ATCC
           29176]
          Length = 352

 Score =  138 bits (347), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 103/343 (30%), Positives = 163/343 (47%), Gaps = 55/343 (16%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV------------------DRSVGL 44
           VL GG+S+ER+VSLSS       L + G     +DV                  D  + +
Sbjct: 5   VLAGGLSTERDVSLSSAAGICRTLLEKGHDAFLLDVFMGLEHTPENLEDVFTLPDHGLDI 64

Query: 45  V--LAHLKPDLA----------------------------FNVLHGNFGEDGLVQAILEL 74
           V  ++  +PDLA                            F  LHG  GE+G +QA  +L
Sbjct: 65  VKNISTEEPDLAAVKASRPDQSDCFFGPNVIELCRLADITFLGLHGGEGENGKLQAAFDL 124

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGV--PVCPSILVNRFTMDSQHL-ISPPYVIK 131
           L I YT    L  A++M K  +KQ+    GV  P   ++  N   +  Q L ++ P V+K
Sbjct: 125 LGIKYTGPDSLGCAVAMHKGVAKQIFLESGVDTPGGGTLYKNGSDLSYQSLGLTLPVVVK 184

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P  GGSS+G+ ++  D+     L    S+++ D++++E Y+ G E  CG++   +L   E
Sbjct: 185 PCSGGSSIGVYIVNTDEEYQNAL--EHSFHYEDEIVVEPYIKGREFACGIIDGKALPPIE 242

Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
           I +PK+ F+ Y  KY    +  V PA IP ++ + ++ L   A  A+     SR+DFL D
Sbjct: 243 I-IPKTGFFDYANKYQDGATMEVCPADIPEEVAERMKALTVKAFNALKLNVYSRADFLLD 301

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
                ++ LE+N  PGMT  S+ P+ A  AG  + +L   +++
Sbjct: 302 A-EGSLYCLEMNTLPGMTSASLMPKEAKVAGIEYSDLCELIIK 343


>gi|261418546|ref|YP_003252228.1| D-alanyl-alanine synthetase A [Geobacillus sp. Y412MC61]
 gi|319765360|ref|YP_004130861.1| D-alanine/D-alanine ligase [Geobacillus sp. Y412MC52]
 gi|261375003|gb|ACX77746.1| D-alanine/D-alanine ligase [Geobacillus sp. Y412MC61]
 gi|317110226|gb|ADU92718.1| D-alanine/D-alanine ligase [Geobacillus sp. Y412MC52]
          Length = 367

 Score =  138 bits (347), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 80/249 (32%), Positives = 134/249 (53%), Gaps = 14/249 (5%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+ F +LHG  GEDG VQ +LE+L IPY  +G+LASA+ MDK+  K + +  G+     I
Sbjct: 96  DVIFPLLHGPNGEDGTVQGLLEILNIPYVGNGVLASAVGMDKVMMKNLFTQAGLRQAKYI 155

Query: 112 LVNRFTMDS---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
            V ++             +  +  P  +KP   GSS+GI   K+   +    +++  ++ 
Sbjct: 156 AVTKYDWQKSGETVYDRIERELGYPCFVKPANAGSSVGISKCKQRGDLKAAFIEAFQYDR 215

Query: 163 GDQLLIEQYVDGIELTCGVMGDAS--LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
             +++IE+ + G E+  GV+G+      V    VPK +FY YE KY    +  ++PA + 
Sbjct: 216 --KIIIEEAIVGREIEIGVIGNDEPICSVVGEIVPKKEFYDYEAKYEDGQTELIIPADVT 273

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280
            + Y+ ++++A  A QA+   G++R DF F      V+  E+N  PG TP S+FP +  +
Sbjct: 274 KEQYETIKQMAITAFQALDLSGLARVDF-FLAEDGAVYINEVNTMPGFTPYSMFPLLWQH 332

Query: 281 AGYSFRELL 289
           +G  + EL+
Sbjct: 333 SGVPYPELI 341


>gi|325283553|ref|YP_004256094.1| D-alanine--D-alanine ligase [Deinococcus proteolyticus MRP]
 gi|324315362|gb|ADY26477.1| D-alanine--D-alanine ligase [Deinococcus proteolyticus MRP]
          Length = 360

 Score =  138 bits (347), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 95/330 (28%), Positives = 164/330 (49%), Gaps = 41/330 (12%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR--------------SVGLVLAH 48
           +L GG S E EVSLSS ++  +AL    F+V+ + + +                G   + 
Sbjct: 28  LLAGGQSEEHEVSLSSARSVLAALPQDRFEVTAVVISKQGRWLPPAETAQALGAGAAESG 87

Query: 49  LKP-----------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSK 97
            +P           D+ F +LHG  GEDG VQ +L L  +P+  SG+L S++ MDK+ +K
Sbjct: 88  GEPMLQRVSDTAGYDVVFPLLHGPMGEDGTVQGLLTLAGLPFVGSGVLGSSVGMDKIMTK 147

Query: 98  QVVSSCGVPVCPSILVNR--FTMDSQHLISP------PYVIKPLKGGSSLGIIVIKKDQS 149
           +V+ + G+P       +R  +  D Q + S       P  +KP   GSS+G+  +     
Sbjct: 148 RVLEAAGIPQVAWREASRAEWRRDPQGVQSRAAELGFPLFVKPANMGSSVGVSRVTGAGE 207

Query: 150 IPLDLLQSSSWNHGDQLLIEQYVDGI--ELTCGVMGD---ASLDVTEIAVPKSDFYSYEL 204
           +   L    ++ H  ++++E        E+  G++G+    +  V E+    +DFY Y+ 
Sbjct: 208 LAEAL--ELAFGHDRRVIVEAAAGAKPREVEVGILGNDDPVASPVGELRF-DTDFYDYDT 264

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           KY+   +  ++PA +P  + + +Q LA  A+QA+ C G+SR DF +   + ++   EIN 
Sbjct: 265 KYTGGRAEMLIPAPLPEGVSERIQELALRAYQALDCAGLSRVDFFYVEETGELLLNEINT 324

Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            PG T  S++P +    G S+ EL+  ++E
Sbjct: 325 MPGFTTTSMYPSLLQAHGLSYPELVTRLIE 354


>gi|269792853|ref|YP_003317757.1| D-alanine/D-alanine ligase [Thermanaerovibrio acidaminovorans DSM
           6589]
 gi|269100488|gb|ACZ19475.1| D-alanine/D-alanine ligase [Thermanaerovibrio acidaminovorans DSM
           6589]
          Length = 316

 Score =  138 bits (347), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 104/303 (34%), Positives = 156/303 (51%), Gaps = 15/303 (4%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--DLAFNVLHG 60
           V  GG S EREVSL SG+A   AL   G+ V  +D D  + +V   L    DL F  LHG
Sbjct: 5   VAYGGDSPEREVSLRSGEAVKEALSSLGWTVEGLDADSPLRVVERALSGAFDLVFVALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG +Q +L+   IPYT     A    MDK  ++ V+ + GV V P  +    +MD 
Sbjct: 65  GWGEDGTLQCLLDTHRIPYTGPRWGACMACMDKEITRGVLLARGVRV-PEGIPFDGSMDQ 123

Query: 121 QHLIS-----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175
             L+         V+KP + GS++GI ++  D    LD     ++ +  +L++E++++G 
Sbjct: 124 GVLLELLRRWGRLVVKPCRCGSTVGIGIV--DHPSRLDRALDEAFRYDRRLVVERFIEGR 181

Query: 176 ELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           ELT  V     G  +L   EI  P+S FY Y  KY+   + ++ PA +     + V R A
Sbjct: 182 ELTVAVFDTPEGPKALPTVEIR-PRSGFYDYSSKYTKGMTEYLCPAPLSEQEAEAVARAA 240

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A++A+GC   SR D   +  + +   LE+N  PGMT  S+ P+ A   G+ F E+L  
Sbjct: 241 VEAYRAMGCSVYSRVDVRLEEGTGEPRVLEVNTAPGMTSTSLVPKAANAFGWDFPEMLRR 300

Query: 292 MVE 294
           + E
Sbjct: 301 ICE 303


>gi|332670956|ref|YP_004453964.1| D-alanine/D-alanine ligase [Cellulomonas fimi ATCC 484]
 gi|332339994|gb|AEE46577.1| D-alanine/D-alanine ligase [Cellulomonas fimi ATCC 484]
          Length = 390

 Score =  138 bits (347), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 94/261 (36%), Positives = 137/261 (52%), Gaps = 22/261 (8%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-- 109
           D+ F +LHG FGEDG +Q +LEL ++ Y  +G+LASA+ MDK   K V++  G+PV P  
Sbjct: 124 DVVFPLLHGPFGEDGTLQGMLELADVRYVGAGVLASAVGMDKHMMKLVLAGHGLPVGPFT 183

Query: 110 SILVNRFTMDSQHL------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
            IL      D   +      +  P  +KP + GSSLGI  +     +P  L  + +  H 
Sbjct: 184 VILPGELERDPDEVARRVEKLGLPLFVKPARAGSSLGITRVDDLADLPAALDAARA--HD 241

Query: 164 DQLLIEQYVDGIELTCGVMGD-------ASLDVTEIAV--PKSDFYSYELKY-SSLNSTH 213
            ++++E  V G E+ CGV+G        ASL   EI V  P+  FY +E KY      T 
Sbjct: 242 PKVVVEAAVVGREIECGVLGGRDGQRARASLP-GEIVVTDPRHTFYDFEAKYLDEAGVTL 300

Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273
             PA +P D+  +V+ +A    +AIGC GI+R D    P   +V   EIN  PG TP S+
Sbjct: 301 ACPADLPADVVAQVRDVAVRTFEAIGCEGIARVDVFVTP-DGEVVVNEINTMPGFTPYSM 359

Query: 274 FPEMAAYAGYSFRELLLWMVE 294
           +P M    G  + +L+  +V+
Sbjct: 360 YPRMWEATGLPYPQLVDELVQ 380


>gi|315937115|gb|ADU56122.1| hypothetical protein CA915-1 [uncultured organism CA915]
          Length = 329

 Score =  138 bits (347), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 99/297 (33%), Positives = 148/297 (49%), Gaps = 18/297 (6%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62
           VL GG+S EREVSL SG+    AL      V   DV   +   L    P +   VL+G  
Sbjct: 14  VLAGGLSPEREVSLQSGRRLVDALRQLDVDVEFGDVGTDLTETLMTDPPSVVLLVLYGIP 73

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV--PVCPSILVNRF-TMD 119
           GEDG V+ +LEL  +PY  +   A  L+ DK  +K ++   G+  P   ++  N F  + 
Sbjct: 74  GEDGTVREVLELAGVPYVGASAEACRLAFDKPLAKALLVRAGLRTPASVTLSSNAFHDLG 133

Query: 120 SQHLIS-------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
           +  L+S        P  +KP  GGS+ G+  ++K   +P  L+  + + H D  LIE+ V
Sbjct: 134 AAPLMSLILKRLGLPVFVKPRAGGSAFGVTRVRKADELPAALM--ACFAHHDTALIERAV 191

Query: 173 DGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
            G+E+  GV+    G  ++   EI VP+   Y Y   YS+  +    PA++    ++ V 
Sbjct: 192 PGVEVAVGVLDLGDGPVAMPPVEI-VPRYGVYDYAAHYSAGATDFFCPARLSERAHRAVA 250

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285
             A  AH+A+  R +SR+D + D    +VF LE  V PG+T  S F    A  GY+F
Sbjct: 251 EAAVTAHRALRLRDLSRTDLIVDK-DDQVFVLETAVAPGLTDTSTFAMGIAAQGYAF 306


>gi|256397141|ref|YP_003118705.1| D-alanyl-alanine synthetase A [Catenulispora acidiphila DSM 44928]
 gi|256363367|gb|ACU76864.1| D-alanine/D-alanine ligase [Catenulispora acidiphila DSM 44928]
          Length = 394

 Score =  137 bits (346), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 86/271 (31%), Positives = 141/271 (52%), Gaps = 25/271 (9%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+   +LHG +GEDG +Q +LEL  +PY  SG+LASA+SMDK   K++++  G  V P  
Sbjct: 122 DVVLPLLHGPYGEDGTLQGLLELAGVPYVGSGVLASAVSMDKEFMKRLLAQAGFEVGPYE 181

Query: 112 LVNRFTMDSQ----------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN 161
           +V      ++            +  P  +KP + GSS+GI   K D    LD    ++  
Sbjct: 182 VVRPRDWGTEEGRAAVRLAVEELGYPVFVKPARAGSSMGI--TKVDAPEELDQAIDAARR 239

Query: 162 HGDQLLIEQYVDGIELTCGVM-GDASLDVTEIAVPKS-------DFYSYELKYSSLNSTH 213
           H  ++L+E  ++G E+ CGV+ G    D  E ++P          FY ++ KY   ++  
Sbjct: 240 HDPKVLVEAAIEGREIECGVLEGAGPQDPAEASLPAELRVTGPHAFYDFQAKYLDGSTEV 299

Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF----DPLSRKVFWLEINVQPGMT 269
            +PA++  +  ++++  A    + +GC G++R DF +    D    +    EIN  PG T
Sbjct: 300 DIPARLSAEEIEDIRGQAVGVFETLGCEGLARVDFFYQESADGGPGRFIVNEINTMPGFT 359

Query: 270 PVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           P S+FP+M   AG S+ EL+  ++ D + LR
Sbjct: 360 PTSMFPQMWQAAGLSYPELIARLI-DTALLR 389


>gi|160885529|ref|ZP_02066532.1| hypothetical protein BACOVA_03529 [Bacteroides ovatus ATCC 8483]
 gi|260172151|ref|ZP_05758563.1| D-alanyl-alanine synthetase A [Bacteroides sp. D2]
 gi|293371713|ref|ZP_06618124.1| D-ala D-ala ligase N-terminal domain protein [Bacteroides ovatus SD
           CMC 3f]
 gi|299147381|ref|ZP_07040446.1| D-alanine--D-alanine ligase [Bacteroides sp. 3_1_23]
 gi|315920460|ref|ZP_07916700.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|156109151|gb|EDO10896.1| hypothetical protein BACOVA_03529 [Bacteroides ovatus ATCC 8483]
 gi|292633410|gb|EFF51980.1| D-ala D-ala ligase N-terminal domain protein [Bacteroides ovatus SD
           CMC 3f]
 gi|298514659|gb|EFI38543.1| D-alanine--D-alanine ligase [Bacteroides sp. 3_1_23]
 gi|313694335|gb|EFS31170.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 324

 Score =  137 bits (346), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 92/323 (28%), Positives = 161/323 (49%), Gaps = 33/323 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKV-----------------SQIDVDR--- 40
           +A++ GG +SE  VSL S +   S ++   + +                 +++ VDR   
Sbjct: 5   IAIVAGGDTSEIVVSLRSAQGIYSFIDKEKYNLYIVEMEGRRWEVQLPDGNKVPVDRNDF 64

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           S       +  D A+  +HG  GEDG +Q   +++ IPY+  G+LA+A++ DK    Q +
Sbjct: 65  SFTNGTEKVVFDFAYITIHGTPGEDGRLQGYFDMMRIPYSCCGVLAAAITYDKFTCNQYL 124

Query: 101 SSCGVPVCPSILVNRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
            + GV +  S+L+ +    S       I  P  IKP  GGSS G+  +K  + I   +++
Sbjct: 125 KAFGVRIAESLLLRQGQSVSDEEVVEKIGLPCFIKPSLGGSSFGVTKVKTKEQIQPAIVK 184

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV----TEIAVPKSDFYSYELKYSSLNST 212
             ++   +++++E ++DG ELTCG        V    TE+ V  ++F+ Y+ KY+     
Sbjct: 185 --AFGEAEEVIVEAFMDGTELTCGCYKTKEKSVIFPPTEV-VTHNEFFDYDAKYNG-QVD 240

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
            + PA+I  ++ K VQ L    +  +GC GI R D++      K+  LE+N  PGMT  S
Sbjct: 241 EITPARISDELTKRVQMLTSAIYDILGCSGIIRVDYII-TAGEKLNLLEVNTTPGMTTTS 299

Query: 273 IFPEMAAYAGYSFRELLLWMVED 295
             P+    AG   ++++  ++E+
Sbjct: 300 FIPQQVRAAGLDIKDVMTDIIEN 322


>gi|294631605|ref|ZP_06710165.1| D-alanine-D-alanine ligase [Streptomyces sp. e14]
 gi|292834938|gb|EFF93287.1| D-alanine-D-alanine ligase [Streptomyces sp. e14]
          Length = 385

 Score =  137 bits (346), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 93/263 (35%), Positives = 138/263 (52%), Gaps = 23/263 (8%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+ F VLHG +GEDG +Q +LEL  +PY  SG+LASA+  DK   K+V +S G+ V P +
Sbjct: 120 DVVFPVLHGPYGEDGTLQGLLELSGVPYVGSGVLASAVGQDKEYMKRVFTSFGLRVGPYV 179

Query: 112 LVNRFTMDSQHLISP------------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
           ++     D     +             P  +KP + GSS+GI   K D    LD     +
Sbjct: 180 VIRPREWDRDPAAARKKVVDFAGEHGWPLFVKPARAGSSIGI--TKVDGLAGLDEAIEEA 237

Query: 160 WNHGDQLLIEQYVDGIELTCGVM----GDASLDVTEIAVPKSD-FYSYELKYSSLNST-H 213
             H  ++L+E  V G E+ CGV+    G  +    EI  P+   +Y +E KY  ++ST  
Sbjct: 238 RRHDPKVLVEAAVRGREIECGVLEFEDGPRASVPAEIPPPQEHAYYDFEAKY--IDSTPG 295

Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273
           V+PA +  +   EV+RLA  A +A  C G+ R+DF        V   EIN  PG TP+S+
Sbjct: 296 VVPAPLTEEQTAEVRRLAVEAFEAASCEGLVRADFFLAEDGGFVI-NEINTMPGFTPISM 354

Query: 274 FPEMAAYAGYSFRELLLWMVEDA 296
           +P+M    G S+ EL+  +++ A
Sbjct: 355 YPKMWEATGVSYEELVDRLIQAA 377


>gi|229826569|ref|ZP_04452638.1| hypothetical protein GCWU000182_01944 [Abiotrophia defectiva ATCC
           49176]
 gi|229789439|gb|EEP25553.1| hypothetical protein GCWU000182_01944 [Abiotrophia defectiva ATCC
           49176]
          Length = 353

 Score =  137 bits (346), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 99/338 (29%), Positives = 160/338 (47%), Gaps = 51/338 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKAC---------------------------ASALEDAGFKV 33
           +AV++GG SSE EVSL SG++                              AL+D  +K 
Sbjct: 5   LAVIVGGRSSEHEVSLVSGESVIEGIDTDKYDVKIIVISKEGEWLLAPNTEALKDGSWKE 64

Query: 34  SQI------DVDRSVGLVLAH------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81
           S++      D      LV         L  D  F VLHG +GEDG +Q + EL  IPY  
Sbjct: 65  SKVKAVISPDAKDKALLVFNENGSVEKLAIDAVFPVLHGLYGEDGTIQGLFELAGIPYVG 124

Query: 82  SGILASALSMDKMRSKQVVSSCGVPVCPSILVNR-------FTMDSQHLISP-PYVIKPL 133
            G++ASA+ MDK  +KQVV + G+     + V R         +D      P PY +KP 
Sbjct: 125 CGVIASAVGMDKWYTKQVVDTTGIRQARFVPVYRDELKEMDKVIDKIEKAYPYPYFVKPS 184

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
             GSS G+      + +   LL ++   H  ++L+E+ + G EL C V+G   +  + + 
Sbjct: 185 NAGSSKGVSKAADREGLKKALLLAAE--HDRKILVEETIVGRELECAVLGGFDVKASGVG 242

Query: 194 --VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
             +  ++FY ++ KY++  S  VL  ++P    +E++  A    +A+   G+SR DF  +
Sbjct: 243 EILAAAEFYDFDAKYNNAESKTVLSPELPEGKTEEIREAAVKIFKALDGYGLSRVDFFLE 302

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
             + ++ + EIN  PG T +S++P +    G   + L+
Sbjct: 303 NDTNEIVFNEINTLPGFTAISMYPMLWKEQGLDKKALI 340


>gi|297243295|ref|ZP_06927229.1| D-alanine-D-alanine ligase (ATP-grasp enzyme) [Gardnerella
           vaginalis AMD]
 gi|296888702|gb|EFH27440.1| D-alanine-D-alanine ligase (ATP-grasp enzyme) [Gardnerella
           vaginalis AMD]
          Length = 380

 Score =  137 bits (346), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 83/279 (29%), Positives = 141/279 (50%), Gaps = 33/279 (11%)

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV 105
           L H+  D  F VLHG  GEDG +Q +LE++++PY   G+LASA  MDK  +KQ+  + G+
Sbjct: 101 LGHI--DAVFPVLHGPNGEDGTLQGLLEMMQVPYVGCGVLASAACMDKYYAKQLFKAAGI 158

Query: 106 PVCPSILV----------NRFTMDSQHLISP--------PYVIKPLKGGSSLGIIVIKKD 147
            V P I +          NRF   +  +++         P  +KP + GSS G+  ++  
Sbjct: 159 DVAPGIALDARKFASDSTNRFAAYANEMLAQVEAAKLEYPLFVKPSRAGSSFGVTKVESH 218

Query: 148 QSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP-----------K 196
            +  L      +  H  ++L+EQ ++  E+ C V+     +  ++++P           +
Sbjct: 219 DAKALAQAVFEASKHDWRVLVEQGINAREIECAVLAARDGEEPKVSLPGEIVLDKRQAGE 278

Query: 197 SDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255
             FY ++ KY    ++HV +PA +P +  + V++ A  A +A   RG+SR D    P   
Sbjct: 279 DQFYDFDSKYMDSAASHVEVPADLPAETLELVRKTALAAFKAADGRGLSRVDSFVTPEGH 338

Query: 256 KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            V   EIN  PG TP+S++P+     G S+ +L+  ++E
Sbjct: 339 -VMINEINTMPGFTPISMYPKAWEATGISYGDLITKLIE 376


>gi|254967059|gb|ACT97567.1| putative D-alanine-D-alanine ligase [uncultured organism]
          Length = 341

 Score =  137 bits (346), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 92/323 (28%), Positives = 161/323 (49%), Gaps = 33/323 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKV-----------------SQIDVDR--- 40
           +A++ GG +SE  VSL S +   S ++   + +                 +++ VDR   
Sbjct: 5   IAIVAGGDTSEIVVSLRSAQGIYSFIDKEKYNLYIVEMEGRRWEVQLPDGNKVPVDRNDF 64

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           S       +  D A+  +HG  GEDG +Q   +++ IPY+  G+LA+A++ DK    Q +
Sbjct: 65  SFTNGTEKVVFDFAYITIHGTPGEDGRLQGYFDMMRIPYSCCGVLAAAITYDKFTCNQYL 124

Query: 101 SSCGVPVCPSILVNRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
            + GV +  S+L+ +    S       I  P  IKP  GGSS G+  +K  + I   +++
Sbjct: 125 KAFGVRIAESLLLRQGQSVSDEEVVEKIGLPCFIKPSLGGSSFGVTKVKTKEQIQPAIVK 184

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV----TEIAVPKSDFYSYELKYSSLNST 212
             ++   +++++E ++DG ELTCG        V    TE+ V  ++F+ Y+ KY+     
Sbjct: 185 --AFGEAEEVIVEAFMDGTELTCGCYKTKEKSVIFPPTEV-VTHNEFFDYDAKYNG-QVD 240

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
            + PA+I  ++ K VQ L    +  +GC GI R D++      K+  LE+N  PGMT  S
Sbjct: 241 EITPARISDELTKRVQMLTSAIYDILGCSGIIRVDYIITA-GEKLNLLEVNTTPGMTTTS 299

Query: 273 IFPEMAAYAGYSFRELLLWMVED 295
             P+    AG   ++++  ++E+
Sbjct: 300 FIPQQVRAAGLDIKDVMTDIIEN 322


>gi|291542820|emb|CBL15930.1| D-alanine--D-alanine ligase [Ruminococcus bromii L2-63]
          Length = 349

 Score =  137 bits (346), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 82/245 (33%), Positives = 131/245 (53%), Gaps = 10/245 (4%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           DL F +LHG  GEDG +Q + EL  IP      LASAL MDK R+ ++VS  GV V  S+
Sbjct: 99  DLVFPILHGKNGEDGTLQGMFELSGIPVIGCNTLASALCMDKDRAHKLVSLAGVKVPKSV 158

Query: 112 LVNRFTMDS-----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQL 166
              R   ++     +  +S P  +KP++ GSS GI  + +   I   +   S++ H  ++
Sbjct: 159 TFKRSEKNTALKKIETELSYPLFVKPVRAGSSFGITKVTEQAEINTAI--ESAFEHDTEV 216

Query: 167 LIEQYVDGIELTCGVMGDASLDVTEIAVPK--SDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           ++E+ + G E+ C ++G  +L V  I   +  + F+ Y  KY+   S   +PA++     
Sbjct: 217 IVEEAIGGFEVGCAILGIDNLTVRRIDEIELSNGFFDYTEKYTLKTSKIHMPARLSPKEE 276

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
           K VQ  A   ++A+GC G +R D  + P S ++ + E+N  PG+T  S +P M    G S
Sbjct: 277 KRVQETAVAIYKALGCSGFARVDMFYTP-SNEIIFNEVNTIPGLTSHSRYPNMMKGIGLS 335

Query: 285 FRELL 289
           F ++L
Sbjct: 336 FADML 340


>gi|39931167|sp|Q8PDW3|DDLA_XANCP RecName: Full=D-alanine--D-alanine ligase A; AltName:
           Full=D-Ala-D-Ala ligase A; AltName: Full=D-alanylalanine
           synthetase A
 gi|21111185|gb|AAM39541.1| D-alanine-D-alanine ligase A [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66571909|gb|AAY47319.1| D-alanine-D-alanine ligase A [Xanthomonas campestris pv. campestris
           str. 8004]
          Length = 373

 Score =  137 bits (346), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 98/347 (28%), Positives = 164/347 (47%), Gaps = 57/347 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD--------------------- 39
           + ++ GG S+E EVSL S +    AL+   F+   I +D                     
Sbjct: 11  VGLIFGGKSAEHEVSLQSARNILQALDPQRFEPVLIGIDKQGQWHLSAQESFLLDADDPS 70

Query: 40  ----------------------RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEI 77
                                 R+V    A  + D+ F ++HG  GEDG +Q +L +  +
Sbjct: 71  RIALRHSGRGLAVLPGAASAQLRAVDAEQALAQIDVVFPIVHGTLGEDGSLQGLLRMANL 130

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT---MDSQHLISP---PYVIK 131
           P+  SG+L SA++MDK  +K+V+   G+ V P     R T    D Q LI+    P  +K
Sbjct: 131 PFVGSGVLGSAVAMDKDMAKRVLRDAGLEVAPFACFTRHTAAQADVQTLIAQFGLPLFVK 190

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT- 190
           P   GSS+G+  ++  +     L  +  ++H  ++L+E  + G E+ C V+G+A+   + 
Sbjct: 191 PANQGSSVGVSQVRSAEEFSAALELALRYDH--KVLVEAAIAGREIECAVLGNATPQASV 248

Query: 191 --EIAVPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
             E+ V  + FYSY+ KY     +  V+PA I       +Q+ A  A+QA+ C G++R D
Sbjct: 249 CGEVVVHDA-FYSYQTKYIRDDGAATVIPADIDAHTQHRIQQCALQAYQALDCAGMARVD 307

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
                  R V   E+N  PG T +S++P++   +G  +R L+  ++E
Sbjct: 308 VFLCADGRIVIN-EVNTLPGFTRISMYPKLWEASGLDYRSLVTRLIE 353


>gi|308235015|ref|ZP_07665752.1| D-alanyl-alanine synthetase A [Gardnerella vaginalis ATCC 14018]
 gi|311114197|ref|YP_003985418.1| D-alanine--D-alanine ligase [Gardnerella vaginalis ATCC 14019]
 gi|310945691|gb|ADP38395.1| D-alanine--D-alanine ligase [Gardnerella vaginalis ATCC 14019]
          Length = 381

 Score =  137 bits (346), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 87/280 (31%), Positives = 139/280 (49%), Gaps = 35/280 (12%)

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV 105
           L H+  D  F VLHG  GEDG +Q +LE++++PY   G+LASA  MDK  +KQ+  + G+
Sbjct: 101 LGHI--DAVFPVLHGPNGEDGTLQGLLEMMQVPYVGCGVLASAACMDKYYAKQLFKAAGI 158

Query: 106 PVCPSIL--VNRFTMDSQHLISP----------------PYVIKPLKGGSSLGIIVIK-K 146
            V P I   V +F  D+ +                    P  +KP + GSS G+  ++ +
Sbjct: 159 DVAPGIALDVRKFASDAANHFDAYANEILEQVEEAKLEYPLFVKPSRAGSSFGVTKVESR 218

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP----------- 195
           D     D +  +S  H  ++L+EQ +D  E+ C V+     D  + + P           
Sbjct: 219 DAKALADAVYEAS-KHDWRVLVEQGIDAREIECAVLAARDGDEPQASWPGEVVLDKREAG 277

Query: 196 KSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
           +  FY ++ KY    ++HV +PA +P +  + V+  A  A +A   RG+SR D    P  
Sbjct: 278 EDQFYDFDSKYMDSAASHVEVPANLPEETLQRVRNTALAAFKAADGRGLSRVDSFVTPEG 337

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             V   EIN  PG TP+S++P+     G S+ +L+  ++E
Sbjct: 338 H-VMINEINTMPGFTPISMYPKAWEATGISYSDLITKLIE 376


>gi|284028771|ref|YP_003378702.1| D-alanine/D-alanine ligase [Kribbella flavida DSM 17836]
 gi|283808064|gb|ADB29903.1| D-alanine/D-alanine ligase [Kribbella flavida DSM 17836]
          Length = 323

 Score =  137 bits (346), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 101/321 (31%), Positives = 158/321 (49%), Gaps = 27/321 (8%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD--------RSVGLVLAHLKPD 52
           +AV+ GG S E +VSL+SG+  A A  + G  V  + ++        +   + L     D
Sbjct: 3   VAVISGGASPEHDVSLASGQGIARAAAELGHTVLCLVIEPDGTWRDGQHEAIELLQFC-D 61

Query: 53  LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
           +    LHG  GEDG++Q  L+ L +PY  SG+ ASA+ +DK  +K V+ + G+PV P I 
Sbjct: 62  VVVPALHGQGGEDGVIQGFLQQLGVPYVGSGVAASAVGLDKHLTKAVLRAHGLPVAPGIT 121

Query: 113 VNRFTMDS-----QHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
           +    +       Q L    I  P  +KP  GGSS G+  +     +   +  ++  +  
Sbjct: 122 LRGADLADPESVLQRLKEASIDLPVFVKPGNGGSSFGVTRVTDSAELGRAVADAAGLD-- 179

Query: 164 DQLLIEQYVDGIELTCGVM--GDASLDVT---EI-AVPKSDFYSYELKYSSLNSTHVLPA 217
            Q+L+EQ + G E+   VM   D  ++     EI + P   F+    KY+   +  V+PA
Sbjct: 180 SQVLVEQEIRGREIDLAVMEFPDGRIEAGPALEIHSDPARPFFDTTAKYAGAGTRFVVPA 239

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
            +   +   ++R A    Q +GC G++R DF F P   +    E+N  PG TP S FP M
Sbjct: 240 PLDPALAASLRRTAVEVFQTLGCAGLARVDF-FVPADGQPVVNEVNTFPGFTPASQFPRM 298

Query: 278 AAYAGYSFRELLLWMVEDASC 298
            A AG S+ EL+  ++E A  
Sbjct: 299 WAAAGMSYPELVHNLLETARA 319


>gi|169334678|ref|ZP_02861871.1| hypothetical protein ANASTE_01081 [Anaerofustis stercorihominis DSM
           17244]
 gi|169257416|gb|EDS71382.1| hypothetical protein ANASTE_01081 [Anaerofustis stercorihominis DSM
           17244]
          Length = 358

 Score =  137 bits (346), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 81/258 (31%), Positives = 144/258 (55%), Gaps = 18/258 (6%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+ F VLHG  GEDG +Q + E+++ PY    +LAS++ MDK  +K++  S G+PV   +
Sbjct: 88  DIIFPVLHGQNGEDGRIQGLFEMMDKPYVGCEVLASSVCMDKDIAKRIFRSVGIPVVDDV 147

Query: 112 LVNRFTMDSQHLISP-----------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160
           LV    +++  L+             P  +KP+  GSS+GI   K   S+   LL++  +
Sbjct: 148 LVFNTDIETDKLLEATLDRCEENLPYPMFVKPVNMGSSVGISKAKDRDSLKEALLKAVKF 207

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHV-LP 216
           +   ++L+E+ ++  E+   V+G++  + +   EI   K +FY YE KY S + + + +P
Sbjct: 208 DT--KILVEKGINAREIEVAVLGNSHPEASYPGEIVSCK-EFYDYEAKYLSGDGSRIDIP 264

Query: 217 AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPE 276
           AKI   I ++++  A  A +A+G  G+SR DF  D  S+ ++  E N  PG T +S++ +
Sbjct: 265 AKIDDKIIEKIRTYAVKAFKAVGGSGLSRVDFFLDKDSKDIYLNEANTLPGFTNISMYAK 324

Query: 277 MAAYAGYSFRELLLWMVE 294
           M  Y G  + +L+  +++
Sbjct: 325 MWDYMGIGYSDLIEKLID 342


>gi|297528575|ref|YP_003669850.1| D-alanine/D-alanine ligase [Geobacillus sp. C56-T3]
 gi|297251827|gb|ADI25273.1| D-alanine/D-alanine ligase [Geobacillus sp. C56-T3]
          Length = 367

 Score =  137 bits (346), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 80/249 (32%), Positives = 134/249 (53%), Gaps = 14/249 (5%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+ F +LHG  GEDG VQ +LE+L IPY  +G+LASA+ MDK+  K + +  G+     I
Sbjct: 96  DVIFPLLHGPNGEDGTVQGLLEILNIPYVGNGVLASAVGMDKVMMKNLFAQAGLRQAKYI 155

Query: 112 LVNRFTMDS---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
            V ++             +  +  P  +KP   GSS+GI   K+   +    +++  ++ 
Sbjct: 156 AVTKYDWQKSGETVYDRIERELGYPCFVKPANAGSSVGISKCKQRGDLKAAFIEAFKYDR 215

Query: 163 GDQLLIEQYVDGIELTCGVMGDAS--LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
             +++IE+ + G E+  GV+G+      V    VPK +FY YE KY    +  ++PA + 
Sbjct: 216 --KIIIEEAIVGREIEIGVIGNDEPICSVVGEIVPKKEFYDYEAKYEDGQTELIIPADVT 273

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280
            + Y+ ++++A  A QA+   G++R DF F      V+  E+N  PG TP S+FP +  +
Sbjct: 274 KEQYETIKQMAITAFQALDLSGLARVDF-FLAEDGAVYINEVNTMPGFTPYSMFPLLWQH 332

Query: 281 AGYSFRELL 289
           +G  + EL+
Sbjct: 333 SGVPYPELI 341


>gi|271969210|ref|YP_003343406.1| D-alanine--D-alanine ligase [Streptosporangium roseum DSM 43021]
 gi|270512385|gb|ACZ90663.1| D-alanine--D-alanine ligase [Streptosporangium roseum DSM 43021]
          Length = 369

 Score =  137 bits (346), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 80/261 (30%), Positives = 139/261 (53%), Gaps = 24/261 (9%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+ F V+HG F EDG +Q +LE+  + Y  SG+LASA+ MDK   K V+++ G+PV P +
Sbjct: 105 DVVFPVMHGPFAEDGTIQGLLEMAGVRYVGSGVLASAVGMDKAYMKMVLAASGLPVGPYV 164

Query: 112 LV--------NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS---SW 160
           ++            +     +  P  +KP + GSS GI      ++  L+ L+++   + 
Sbjct: 165 VIRDRDWRTDRDRVLKEVQELGWPVFVKPARAGSSQGI-----SKAHDLEELEAAVGFAR 219

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKS-------DFYSYELKYSSLNSTH 213
            H  ++L+E  + G E+ C V+     +    +VP         +F+ +E KY   + + 
Sbjct: 220 EHDPKVLVEAAIAGREIECAVLESLGDEAARASVPGEVLVRGDHEFFDFEAKYIGDDMSL 279

Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273
            +PA IP D+ + ++ +A  A +A+GC G+SR DF +    R +   EIN  PG T +S+
Sbjct: 280 SVPADIPADVAENLRAMAVRAFEALGCEGLSRVDFFYTADGRLILN-EINTMPGFTAMSV 338

Query: 274 FPEMAAYAGYSFRELLLWMVE 294
            P++ A  G S+ EL+  +++
Sbjct: 339 APQLWAATGLSYAELVERLIQ 359


>gi|77747741|ref|NP_635617.2| D-alanyl-alanine synthetase A [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|77761078|ref|YP_241339.2| D-alanyl-alanine synthetase A [Xanthomonas campestris pv.
           campestris str. 8004]
          Length = 368

 Score =  137 bits (346), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 98/347 (28%), Positives = 164/347 (47%), Gaps = 57/347 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD--------------------- 39
           + ++ GG S+E EVSL S +    AL+   F+   I +D                     
Sbjct: 6   VGLIFGGKSAEHEVSLQSARNILQALDPQRFEPVLIGIDKQGQWHLSAQESFLLDADDPS 65

Query: 40  ----------------------RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEI 77
                                 R+V    A  + D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  RIALRHSGRGLAVLPGAASAQLRAVDAEQALAQIDVVFPIVHGTLGEDGSLQGLLRMANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT---MDSQHLISP---PYVIK 131
           P+  SG+L SA++MDK  +K+V+   G+ V P     R T    D Q LI+    P  +K
Sbjct: 126 PFVGSGVLGSAVAMDKDMAKRVLRDAGLEVAPFACFTRHTAAQADVQTLIAQFGLPLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT- 190
           P   GSS+G+  ++  +     L  +  ++H  ++L+E  + G E+ C V+G+A+   + 
Sbjct: 186 PANQGSSVGVSQVRSAEEFSAALELALRYDH--KVLVEAAIAGREIECAVLGNATPQASV 243

Query: 191 --EIAVPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
             E+ V  + FYSY+ KY     +  V+PA I       +Q+ A  A+QA+ C G++R D
Sbjct: 244 CGEVVVHDA-FYSYQTKYIRDDGAATVIPADIDAHTQHRIQQCALQAYQALDCAGMARVD 302

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
                  R V   E+N  PG T +S++P++   +G  +R L+  ++E
Sbjct: 303 VFLCADGRIVIN-EVNTLPGFTRISMYPKLWEASGLDYRSLVTRLIE 348


>gi|300791157|ref|YP_003771448.1| D-alanine-D-alanine ligase [Amycolatopsis mediterranei U32]
 gi|299800671|gb|ADJ51046.1| D-alanine-D-alanine ligase [Amycolatopsis mediterranei U32]
          Length = 314

 Score =  137 bits (346), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 98/300 (32%), Positives = 157/300 (52%), Gaps = 20/300 (6%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG+S ER+VSL SG+  ++AL+   F + + D D  +   L   +PD     LHG
Sbjct: 6   VAVLAGGLSHERDVSLRSGRRLSAALKSESFGIEEWDTDAGLLERLRTQRPDAVVVALHG 65

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV------- 113
             GE+G VQ +LE+L +P+  +G      + DK  +K +V + G  V P  +V       
Sbjct: 66  GEGENGSVQTVLEMLGVPFVGTGSQGCRRAWDKPTAKALVQNAGF-VTPGWVVLPHSTFR 124

Query: 114 ---NRFTMDSQ-HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
               +  +D+    +  P ++KP +GGS+LG  V+++   +P  ++    + +GD +L E
Sbjct: 125 ELGAQAVLDAMVETLGLPLILKPDQGGSALGTQVVREAAELPAAMV--GCFAYGDTVLAE 182

Query: 170 QYVDGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
           ++VDG+E+   V+    G  +L   EI VP+S  Y Y  +Y++  +    PA++     K
Sbjct: 183 RFVDGVEVAVTVIEGEDGPEALPAVEI-VPESGVYDYTARYTAGLTDFFTPARLDDAAAK 241

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285
            V  LA  AH+ +G R ISR+D +       V +LE+N  PG+T  S  P     AG S 
Sbjct: 242 AVAELAVAAHRVLGLRDISRTDAVV-MADGTVHFLEVNPSPGLTETSTVPMAIEAAGKSL 300


>gi|72161037|ref|YP_288694.1| D-alanyl-alanine synthetase A [Thermobifida fusca YX]
 gi|71914769|gb|AAZ54671.1| D-alanine--D-alanine ligase [Thermobifida fusca YX]
          Length = 371

 Score =  137 bits (346), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 97/304 (31%), Positives = 161/304 (52%), Gaps = 32/304 (10%)

Query: 18  SGKACASALEDAG--FKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELL 75
           SG   A AL+  G   +V+   + R VG V      D+   +LHG FGEDG +Q +LEL 
Sbjct: 75  SGARLALALDTPGAFLEVAPDSLPRLVGQV------DVVLPLLHGPFGEDGTIQGLLELA 128

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--------RFTMDSQHLISPP 127
            + Y  +G+ ASA SMDK+  K ++++ G+   P + V+        +  +D+   +   
Sbjct: 129 GVRYVGAGVFASAASMDKVFMKALLTAQGLKTGPYLAVSDRAWTRHRKRVLDNIAALGGV 188

Query: 128 YVIKPLKGGSSLGIIVI--KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
             +KP + GSS+GI  +    D +   + ++++   H  ++++E  + G E+ CGV+   
Sbjct: 189 VFVKPARAGSSIGISRVPDATDTAAVTEAIEAAR-AHDPKVIVEAGIQGREIECGVL--E 245

Query: 186 SLDVTE--IAVPKS-------DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           SLD  E  +++P         DFY +E KY S NS   +PA +P ++ + V++LA  A  
Sbjct: 246 SLDGGEPDVSLPAEIHVAEGYDFYDFEAKYLS-NSGLSIPADLPDEVTQRVRKLAAEAFD 304

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           A+GC G++R DF +     +++  EIN  PG TP S FP+M A +G  +  L+  ++  A
Sbjct: 305 ALGCEGLARVDFFYGD-DGEIYINEINTMPGFTPASAFPQMWAASGLDYPALVDRLIRTA 363

Query: 297 SCLR 300
              R
Sbjct: 364 LVRR 367


>gi|332138295|pdb|3RFC|A Chain A, Crystal Structure Of D-Alanine-D-Alanine Ligase A From
           Xanthomonas Oryzae Pathovar Oryzae With Adp
          Length = 384

 Score =  137 bits (346), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 101/346 (29%), Positives = 166/346 (47%), Gaps = 55/346 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD--------------------- 39
           + ++ GG S+E EVSL S +    AL+   F+   I +D                     
Sbjct: 23  VGLIFGGKSAEHEVSLQSARNILDALDPQRFEPVLIGIDKQGQWHVNDPDSFLLHADDPA 82

Query: 40  --------RSVGLV----LAHLKP----------DLAFNVLHGNFGEDGLVQAILELLEI 77
                   R V L+       L+P          D+ F ++HG  GEDG +Q +L +  +
Sbjct: 83  RIALHRSGRGVALLPGAQQQQLRPIQPEQALAQIDVVFPIVHGTLGEDGSLQGLLRMANL 142

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT---MDSQHLISP---PYVIK 131
           P+  SG+L SA++MDK  +K+V+    + V P +  +R T    D   LI+    P  +K
Sbjct: 143 PFVGSGVLGSAVAMDKDMAKRVLRDARLAVAPFVCFDRHTAAHADVDTLIAQLGLPLFVK 202

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA--SLDV 189
           P   GSS+G+  ++   +    L  + +++H  ++L+E  V G E+ C V+G+A     V
Sbjct: 203 PANQGSSVGVSQVRTADAFAAALALALAYDH--KVLVEAAVAGREIECAVLGNAVPHASV 260

Query: 190 TEIAVPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               V    FYSY  KY S +    V+PA I     + +Q++A  A+QA+GC G++R D 
Sbjct: 261 CGEVVVHDAFYSYATKYISEHGAEIVIPADIDAQTQQRIQQIAVQAYQALGCAGMARVDV 320

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
                 R V   E+N  PG T +S++P++   +G  +R L+  ++E
Sbjct: 321 FLCADGRIVIN-EVNTLPGFTRISVYPKLWQASGLDYRGLITRLIE 365


>gi|157369610|ref|YP_001477599.1| D-alanine--D-alanine ligase [Serratia proteamaculans 568]
 gi|157321374|gb|ABV40471.1| D-alanine--D-alanine ligase [Serratia proteamaculans 568]
          Length = 367

 Score =  137 bits (346), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 97/348 (27%), Positives = 171/348 (49%), Gaps = 59/348 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------------------- 40
           + V+ GG S+E EVSL S K    A++   F V+ + +D+                    
Sbjct: 6   VGVIFGGKSAEHEVSLQSAKNIVDAIDKEKFDVTLLGIDKQGQWHINDASNYLLNAENPA 65

Query: 41  ---------SVGLVLAHLKP--------------DLAFNVLHGNFGEDGLVQAILELLEI 77
                    +V L+    K               D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  LIALNRSNKNVALIPGQEKQQLIESGSQGALGQLDVIFPIVHGTLGEDGSLQGLLRMANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFTMDSQHL---ISPPYVIK 131
           P+  +G+L SA+SMDK  +K+++   G+ + P + +   NR   D + L   +  P  +K
Sbjct: 126 PFVGAGVLGSAVSMDKDVTKRLLRDAGLAIAPFVTLTRSNRAKFDFEQLSERLGLPLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD----ASL 187
           P   GSS+G+  ++        +  + S++H  ++L+E  + G E+ C V+G+    ASL
Sbjct: 186 PANQGSSVGVSKVQDRAGFEAAVALAFSFDH--KVLVESAIVGREIECAVLGNDEPQASL 243

Query: 188 DVTEIAVPKSDFYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRS 246
              EI +  + FYSY+ KY +     V+ PA I  ++  +++ +A  A +A+ C G++R 
Sbjct: 244 -CGEIVLSDA-FYSYDTKYINEQGAQVIVPAAIEPEVSDKIRDVALKAFRALECFGLARV 301

Query: 247 DFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           D    P    V   EIN  PG T +S++P++ A +G S+ +L+  ++E
Sbjct: 302 DVFLTP-DNNVVINEINTLPGFTNISMYPKLWAASGVSYSQLITRLIE 348


>gi|167764293|ref|ZP_02436420.1| hypothetical protein BACSTE_02678 [Bacteroides stercoris ATCC
           43183]
 gi|167698409|gb|EDS14988.1| hypothetical protein BACSTE_02678 [Bacteroides stercoris ATCC
           43183]
          Length = 324

 Score =  137 bits (346), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 93/323 (28%), Positives = 161/323 (49%), Gaps = 33/323 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKV-----------------SQIDVDR--- 40
           +A++ GG +SE EVSL S +   S ++   + +                 ++  VDR   
Sbjct: 5   IAIVCGGDTSEFEVSLRSAQGIYSFIDKERYTLYIVEMRGTDWHVQLPDGTKTPVDRNDF 64

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           S  L  A +  D A+  +HG  GEDG +Q   ++L IPY+  G+LA+AL+ DK    Q +
Sbjct: 65  SFRLDGAKVVFDFAYITIHGTPGEDGRLQGYFDMLHIPYSCCGVLAAALTYDKFACNQYL 124

Query: 101 SSCGVPVCPSILVNRFTMDSQH----LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
            + GV +  S+L+ +    S       I  P  IKP  GGSS G+  +   + I   +  
Sbjct: 125 KAFGVRIADSLLLRQGQSVSDEDVIGKIGLPCFIKPSLGGSSFGVTKVNVKEQIQPAI-- 182

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDAS----LDVTEIAVPKSDFYSYELKYSSLNST 212
           + ++    ++L+E ++DG+E+TCG            +TE+ V  ++++ Y+ KY+   S 
Sbjct: 183 AKAFAEAKEVLVEAFMDGMEITCGCYKTKEKSVVFPITEV-VSHNEYFDYKAKYNG-ESD 240

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
            + PA+IP ++   VQ+L    +  +G  GI R D++      K+  LE+N  PGMT  S
Sbjct: 241 EITPARIPDELRDRVQKLTSAIYDILGASGIIRVDYIITE-GEKINLLEVNTTPGMTATS 299

Query: 273 IFPEMAAYAGYSFRELLLWMVED 295
             P+    A    ++++  ++E+
Sbjct: 300 FIPQQVRAANLDIKDVMTDIIEN 322


>gi|325285481|ref|YP_004261271.1| D-alanine--D-alanine ligase [Cellulophaga lytica DSM 7489]
 gi|324320935|gb|ADY28400.1| D-alanine--D-alanine ligase [Cellulophaga lytica DSM 7489]
          Length = 324

 Score =  137 bits (346), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 95/324 (29%), Positives = 164/324 (50%), Gaps = 34/324 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-----------------VDRSVG 43
           +A++MGG S+E ++SL SG      L    F + +I                  VD+S  
Sbjct: 5   IAIIMGGYSNEYKISLKSGNVAYKHLNSNKFNLYRIHILKDKWVYVDANDAESPVDKSDF 64

Query: 44  LVLAH---LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
            ++ +   +K D  FN +HG  GEDG +QA   L+ I  T      +AL+ +K      +
Sbjct: 65  SIIENGHKIKFDCVFNAIHGTPGEDGYLQAYFNLIGITQTACDFYQAALTFNKRDLLSTL 124

Query: 101 SSCGVPVCPSILVNRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
              G+    S  +N+  + ++    + +  P  +K  K GSS GI  + K + +P  +  
Sbjct: 125 KPYGIKAAASYYLNKGDVVNEDEIINTVGLPCFVKANKAGSSFGISKVHKKEDLPKAI-- 182

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVM---GDAS-LDVTEIAVPKSDFYSYELKYSSLNST 212
            +++   D+++IE ++DG E++ GV+   G+   L +TEI   ++DF+ YE KY    S 
Sbjct: 183 ENAYLADDEIIIEAFLDGTEVSVGVIMYNGEPKVLPITEITT-ENDFFDYEAKYEG-KSQ 240

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
            + PA+I  +  ++V  +A   ++ +  +G SRS+F+F  +  + F LE+N  PG+T  S
Sbjct: 241 EITPARITKEQEEKVSNIALRVYKILKMKGYSRSEFIF--VDNEPFMLEMNTTPGLTEES 298

Query: 273 IFPEMAAYAGYSFRELLLWMVEDA 296
           I P+ AA AG S  +L    + +A
Sbjct: 299 ILPQQAAVAGISLSQLFESAITEA 322


>gi|237715323|ref|ZP_04545804.1| D-alanyl-alanine synthetase A [Bacteroides sp. D1]
 gi|237719674|ref|ZP_04550155.1| D-alanyl-alanine synthetase A [Bacteroides sp. 2_2_4]
 gi|262405164|ref|ZP_06081714.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294643536|ref|ZP_06721342.1| D-ala D-ala ligase N-terminal domain protein [Bacteroides ovatus SD
           CC 2a]
 gi|294807043|ref|ZP_06765862.1| D-ala D-ala ligase N-terminal domain protein [Bacteroides
           xylanisolvens SD CC 1b]
 gi|298482427|ref|ZP_07000613.1| D-alanine--D-alanine ligase [Bacteroides sp. D22]
 gi|229444632|gb|EEO50423.1| D-alanyl-alanine synthetase A [Bacteroides sp. D1]
 gi|229450943|gb|EEO56734.1| D-alanyl-alanine synthetase A [Bacteroides sp. 2_2_4]
 gi|262356039|gb|EEZ05129.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292641111|gb|EFF59323.1| D-ala D-ala ligase N-terminal domain protein [Bacteroides ovatus SD
           CC 2a]
 gi|294445742|gb|EFG14390.1| D-ala D-ala ligase N-terminal domain protein [Bacteroides
           xylanisolvens SD CC 1b]
 gi|295088098|emb|CBK69621.1| D-alanine--D-alanine ligase [Bacteroides xylanisolvens XB1A]
 gi|298271406|gb|EFI12981.1| D-alanine--D-alanine ligase [Bacteroides sp. D22]
          Length = 324

 Score =  137 bits (345), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 93/323 (28%), Positives = 160/323 (49%), Gaps = 33/323 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKV-----------------SQIDVDR--- 40
           +A++ GG +SE  VSL S +   S ++   + +                 +++ VDR   
Sbjct: 5   IAIVAGGDTSEIVVSLRSAQGIYSFIDKEKYNLYIVEMEGRRWEVQLPDGNKVPVDRNDF 64

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           S       +  D A+  +HG  GEDG +Q   +++ IPY+  G+LA+A++ DK    Q +
Sbjct: 65  SFTNGTEKVVFDFAYITIHGTPGEDGRLQGYFDMMRIPYSCCGVLAAAITYDKFTCNQYL 124

Query: 101 SSCGVPVCPSILVNRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
            + GV +  S+L+ +    S       I  P  IKP  GGSS G+  +K  + I   +++
Sbjct: 125 KAFGVRIAESLLLRQGQSISDEEVVEKIGLPCFIKPSLGGSSFGVTKVKTKEQIQPAIVK 184

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV----TEIAVPKSDFYSYELKYSSLNST 212
             ++    ++L+E ++DG ELTCG        V    TE+ V  ++F+ Y+ KY+     
Sbjct: 185 --AFGEAQEVLVEAFMDGTELTCGCYKTKEKTVIFPPTEV-VTHNEFFDYDAKYNG-QVD 240

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
            + PA+I  ++ K VQ L    +  +GC GI R D++      K+  LE+N  PGMT  S
Sbjct: 241 EITPARISDELTKRVQMLTSAIYDILGCSGIIRVDYIVTA-GEKLNLLEVNTTPGMTTTS 299

Query: 273 IFPEMAAYAGYSFRELLLWMVED 295
             P+    AG   ++++  ++E+
Sbjct: 300 FIPQQVRAAGLDIKDVMTDIIEN 322


>gi|170767847|ref|ZP_02902300.1| D-alanine--D-alanine ligase [Escherichia albertii TW07627]
 gi|170123335|gb|EDS92266.1| D-alanine--D-alanine ligase [Escherichia albertii TW07627]
          Length = 364

 Score =  137 bits (345), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 94/346 (27%), Positives = 169/346 (48%), Gaps = 55/346 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR--------SVGLVL-----A 47
           + ++ GG S+E EVSL S K    A++ + F V  + +D+        +   +L     A
Sbjct: 6   IGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDANNYLLNADDPA 65

Query: 48  H--LKP----------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
           H  L+P                            D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  HIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLISPPYVIK 131
           P+  S +LASA  MDK  +K+++   G+ + P I + R         + Q  +  P  +K
Sbjct: 126 PFVGSDVLASAACMDKDITKRLLRDAGLNIAPFITLTRANRHKISFAEVQSKLGLPLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  +  ++   + +  +  ++H  ++++EQ + G E+ C V+G+     + 
Sbjct: 186 PANQGSSVGVSKVTSEEQYAIAVDLAFEFDH--KVIVEQGIKGREIECAVLGNDDPQAST 243

Query: 192 IA--VPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               V  SDFY+Y+ KY   +    V+PA I  +I  +++ +A  A+Q +GC G++R D 
Sbjct: 244 CGEIVLTSDFYAYDTKYIDEDGAKVVVPANIAPEINDKIRAIAVQAYQTLGCAGMARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
              P    V   EIN  PG T +S++P++   +G S+ +L+  ++E
Sbjct: 304 FLTP-ENDVVINEINTLPGFTNISMYPKLWQASGLSYTDLITRLIE 348


>gi|295100377|emb|CBK97922.1| D-alanine--D-alanine ligase [Faecalibacterium prausnitzii L2-6]
          Length = 366

 Score =  137 bits (345), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 82/243 (33%), Positives = 131/243 (53%), Gaps = 15/243 (6%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+   VLHG +GEDG VQ +LEL  IPY   G+LASA+ MDK  +  +  + G+P    +
Sbjct: 104 DVVIPVLHGLWGEDGTVQGLLELAGIPYVGCGVLASAVCMDKAVANAMFDASGIPHTKWL 163

Query: 112 LVNRFTMDSQ---------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
              R+ ++S            +  P  +KP   GSS+GI   K      L      +  +
Sbjct: 164 SATRWEIESDPDGVCDGVIAKLGWPIFVKPANAGSSVGIT--KAHDRDELKAAIRLALAN 221

Query: 163 GDQLLIEQYVDGIELTCGVMGD---ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI 219
             +++ E +VDG E+ C V+G     S    EI +  ++FY+Y+ KY +  S  V+PA++
Sbjct: 222 DRKVVFEAFVDGHEVECAVIGSDPAVSTRPGEI-LAGAEFYTYDDKYKNGVSQVVIPARL 280

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279
           P +   EV+  A +A+ A+GC G++R DF  +  + +V   EIN  PG TP+S++P++  
Sbjct: 281 PEEKLDEVKTYAAMAYTALGCEGLARCDFFVEKDTGRVLINEINTLPGFTPISMYPKLME 340

Query: 280 YAG 282
           + G
Sbjct: 341 HEG 343


>gi|296101501|ref|YP_003611647.1| D-alanyl-alanine synthetase A [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295055960|gb|ADF60698.1| D-alanyl-alanine synthetase A [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
          Length = 366

 Score =  137 bits (345), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 95/346 (27%), Positives = 162/346 (46%), Gaps = 55/346 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKV--------------------------- 33
           + ++ GG S+E EVSL S K    A++   F V                           
Sbjct: 6   VGIVFGGKSAEHEVSLQSAKNIVDAIDKNRFDVVLLGIDKQGQWHVNDASQYLLNANDPA 65

Query: 34  ------SQIDVDRSVGLVLAHL----------KPDLAFNVLHGNFGEDGLVQAILELLEI 77
                 S+I V    G+V   L          + D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  HIALNPSEISVATVPGVVKGQLIDAGNAQALAQIDVVFPIVHGTLGEDGSLQGMLRMANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIK 131
           P+  S +L SA  MDK  +K+++   G+ V P + + R   D  +       +  P  +K
Sbjct: 126 PFVGSDVLGSAACMDKDVTKRLLRDAGLNVAPFVTLTRANRDKYNFSQISAQLGLPLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  +  +      +  +  ++H  ++++EQ + G E+ C V+G+     + 
Sbjct: 186 PANQGSSVGVSKVTSEAQFTEAVRLAFEFDH--KVVVEQGIKGREIECAVLGNDFPQAST 243

Query: 192 IA--VPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               V  SDFYSY+ KY     +  V+PA I   I  +++ +A  A+QA+GC G++R D 
Sbjct: 244 CGEVVLNSDFYSYDTKYIDDKGAQVVVPANIDPAINDKIRAIAINAYQALGCCGMARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
              P   +V   EIN  PG T +S++P++   +G  + EL+  ++E
Sbjct: 304 FLTP-DNEVVINEINTLPGFTNISMYPKLWQASGLGYSELITRLIE 348


>gi|256032535|pdb|3E5N|A Chain A, Crystal Strucutre Of D-Alanine-D-Alanine Ligase From
           Xanthomonas Oryzae Pv. Oryzae Kacc10331
          Length = 386

 Score =  137 bits (345), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 101/346 (29%), Positives = 166/346 (47%), Gaps = 55/346 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD--------------------- 39
           + ++ GG S+E EVSL S +    AL+   F+   I +D                     
Sbjct: 25  VGLIFGGKSAEHEVSLQSARNILDALDPQRFEPVLIGIDKQGQWHVNDPDSFLLHADDPA 84

Query: 40  --------RSVGLV----LAHLKP----------DLAFNVLHGNFGEDGLVQAILELLEI 77
                   R V L+       L+P          D+ F ++HG  GEDG +Q +L +  +
Sbjct: 85  RIALHRSGRGVALLPGAQQQQLRPIQPEQALAQIDVVFPIVHGTLGEDGSLQGLLRMANL 144

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT---MDSQHLISP---PYVIK 131
           P+  SG+L SA++MDK  +K+V+    + V P +  +R T    D   LI+    P  +K
Sbjct: 145 PFVGSGVLGSAVAMDKDMAKRVLRDARLAVAPFVCFDRHTAAHADVDTLIAQLGLPLFVK 204

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA--SLDV 189
           P   GSS+G+  ++   +    L  + +++H  ++L+E  V G E+ C V+G+A     V
Sbjct: 205 PANQGSSVGVSQVRTADAFAAALALALAYDH--KVLVEAAVAGREIECAVLGNAVPHASV 262

Query: 190 TEIAVPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               V    FYSY  KY S +    V+PA I     + +Q++A  A+QA+GC G++R D 
Sbjct: 263 CGEVVVHDAFYSYATKYISEHGAEIVIPADIDAQTQQRIQQIAVQAYQALGCAGMARVDV 322

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
                 R V   E+N  PG T +S++P++   +G  +R L+  ++E
Sbjct: 323 FLCADGRIVIN-EVNTLPGFTRISVYPKLWQASGLDYRGLITRLIE 367


>gi|254967046|gb|ACT97559.1| putative D-alanine-D-alanine ligase [uncultured organism]
          Length = 324

 Score =  137 bits (345), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 93/323 (28%), Positives = 162/323 (50%), Gaps = 33/323 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKV-----------------SQIDVDR--- 40
           +A++ GG +SE EVSL S +   S ++   + +                 ++  VDR   
Sbjct: 5   IAIVCGGDTSEFEVSLRSAQGIYSFIDKERYTLYIVEMRGTDWHVQLPDGTKTPVDRNDF 64

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           S  L  A +  D A+  +HG  GEDG +Q   ++L IPY+  G+LA+AL+ DK    Q +
Sbjct: 65  SFRLDGAKVVFDFAYITIHGTPGEDGRLQGYFDMLHIPYSCCGVLAAALTYDKFACNQYL 124

Query: 101 SSCGVPVCPSILVNRFTMDSQH----LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
            + GV +  S+L+ +    S       I  P  IKP  GGSS G+  +   + I   +  
Sbjct: 125 KAFGVRIADSLLLRQGQSVSDEDVIGKIGLPCFIKPSLGGSSFGVTKVNVKEQIHPAI-- 182

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDAS----LDVTEIAVPKSDFYSYELKYSSLNST 212
           + ++    ++L+E ++DG+E+TCG   +        +TE+ V  ++++ Y+ KY+   S 
Sbjct: 183 AKAFAEAKEVLVEAFMDGMEITCGCYKNKEKSVVFPITEV-VSHNEYFDYKAKYNG-ESD 240

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
            + PA+IP ++   VQ+L    +  +G  GI R D++      K+  LE+N  PGMT  S
Sbjct: 241 EITPARIPDELRDRVQKLTSAIYDILGASGIIRVDYIITE-GEKINLLEVNTTPGMTATS 299

Query: 273 IFPEMAAYAGYSFRELLLWMVED 295
             P+    A    ++++  ++E+
Sbjct: 300 FIPQQVRAANLESKDVMTDIIEN 322


>gi|256851798|ref|ZP_05557186.1| D-alanine-D-alanine ligase [Lactobacillus jensenii 27-2-CHN]
 gi|260661940|ref|ZP_05862850.1| D-alanine-D-alanine ligase [Lactobacillus jensenii 115-3-CHN]
 gi|282934938|ref|ZP_06340168.1| D-alanine--D-alanine ligase [Lactobacillus jensenii 208-1]
 gi|297205420|ref|ZP_06922816.1| D-alanine--D-alanine ligase [Lactobacillus jensenii JV-V16]
 gi|256615756|gb|EEU20945.1| D-alanine-D-alanine ligase [Lactobacillus jensenii 27-2-CHN]
 gi|260547409|gb|EEX23389.1| D-alanine-D-alanine ligase [Lactobacillus jensenii 115-3-CHN]
 gi|281301031|gb|EFA93345.1| D-alanine--D-alanine ligase [Lactobacillus jensenii 208-1]
 gi|297149998|gb|EFH30295.1| D-alanine--D-alanine ligase [Lactobacillus jensenii JV-V16]
          Length = 361

 Score =  137 bits (345), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 92/340 (27%), Positives = 170/340 (50%), Gaps = 48/340 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           + ++ GG SSE EVS+ SG    +A++   + V  I + +                    
Sbjct: 7   VGLIFGGNSSEYEVSIVSGHNIYNAIDKEKYDVYPIWLTKDNYFASLEDSKKVWDDPTYT 66

Query: 46  ---------------LAHL-KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
                          LA+L + D+ F ++HGN GEDG++Q    +L+ P+    +LA+A+
Sbjct: 67  IKNPHKLANVSNFEQLANLPEMDVYFPIVHGNIGEDGVIQGFFRMLDKPFVGDDVLAAAV 126

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPY-----------VIKPLKGGSS 138
           +MDK  +K +    GVPV   + + RF  + ++     Y            +KP   GSS
Sbjct: 127 TMDKEFTKILAQRAGVPVADWVAIKRFEYNDKNNSKLDYNYVSKKLGTDLFVKPSNQGSS 186

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVP 195
           +GI  +K +      L +  ++ + D++L+E+ +DG E+   V+G+  + V+   +I   
Sbjct: 187 VGISHVKSEADYLPALAE--AFKYDDKVLVEEAIDGTEVETAVLGNDDIIVSGVGQIINA 244

Query: 196 KSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
           K  FYSY+ KY   ++T + +PA +P +I ++V+  A   ++A  C G++R D +     
Sbjct: 245 KGSFYSYKNKYDDSSTTTLQIPADLPAEIVEKVRSNAEKIYRATECSGMARIDSMLRTSD 304

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            +V + E+N  PG T +S++P++   AG  + +L+  ++E
Sbjct: 305 HEVIFNELNALPGFTNISMYPKLFEEAGIKYTDLISRLIE 344


>gi|227504431|ref|ZP_03934480.1| D-alanyl-alanine synthetase A [Corynebacterium striatum ATCC 6940]
 gi|227199079|gb|EEI79127.1| D-alanyl-alanine synthetase A [Corynebacterium striatum ATCC 6940]
          Length = 326

 Score =  137 bits (345), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 81/257 (31%), Positives = 141/257 (54%), Gaps = 17/257 (6%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+   VLHG +GEDG VQ + EL +IPY  +G+LAS+  MDK  +K+++++ G+PV P +
Sbjct: 71  DVIIPVLHGPYGEDGTVQGLFELSDIPYVGAGVLASSAGMDKEFTKKLLTAEGLPVAPEV 130

Query: 112 LV---NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168
           ++      + D +  +  P  +KP +GGSS+G  V K             ++   +++L+
Sbjct: 131 ILKGRTELSADEKAQLGLPVFVKPARGGSSIG--VSKVTDWAEFSRAVEVAFESDNKVLV 188

Query: 169 EQYVDGIELTCGVM--GDASL------DVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
           E  + G E+  GV+   D S+       +  I   +  FY ++ KY     +  +PA + 
Sbjct: 189 EPEIVGAEVEIGVLEYADGSVIASVPAQLNGIEEAEEGFYDFDAKYIDEGVSAQIPAPLD 248

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL-EINVQPGMTPVSIFPEMAA 279
            D+ + ++  A  A +A+GC G+SR DF    +++  F++ EIN  PG TP+S++P++ A
Sbjct: 249 PDLIQTLRETAVSAFRALGCEGLSRVDFF---VTKDAFYINEINTFPGFTPISMYPQVLA 305

Query: 280 YAGYSFRELLLWMVEDA 296
             G  +  LL  ++E A
Sbjct: 306 ATGVDYAALLDALIEGA 322


>gi|160947040|gb|ABX54687.1| D-alanine-D-serine ligase [Enterococcus faecalis]
          Length = 349

 Score =  137 bits (345), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 92/339 (27%), Positives = 160/339 (47%), Gaps = 51/339 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLA------------- 47
           +A++ GG SSE EVSL S  +    L    F++ +I +D      L              
Sbjct: 7   IAIIFGGQSSEYEVSLKSTVSVLETLSTCNFEIIKIGIDLGGKWYLTTSNNKDIEYDVWQ 66

Query: 48  ------------------------HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                   + +PD+ F +LHG  GEDG +Q + EL+ IPY   G
Sbjct: 67  TDPSLQEIIPCFNNRGFYNKTTNKYFRPDVLFPILHGGTGEDGTLQGVFELMNIPYVGCG 126

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP-------PYVIKPLKGG 136
           +  SA+ MDK    +   S GV   P++++   T + +  I         P  +KP + G
Sbjct: 127 VTPSAICMDKYLLHEFAQSVGVKSAPTLIIR--TRNCKDEIDKFIEKNDFPIFVKPNEAG 184

Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AV 194
           SS GI   K ++   L+   + ++ +   ++I++ + G E+ C V+G+  L V E     
Sbjct: 185 SSKGI--NKVNEPDKLEDALTEAFKYSKSVIIQKAIIGREIGCAVLGNEKLLVGECDEVS 242

Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
             SDF+ Y  KY  +++   +PA I ++   E+++ A L ++ +GC G++R DF     +
Sbjct: 243 LNSDFFDYTEKYQMISAKVNIPASISVEFSNEMKKQAQLLYRLLGCSGLARIDFFLSD-N 301

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            ++   EIN  PG T  S +P+M    G +++E++  ++
Sbjct: 302 NEILLNEINTLPGFTEHSRYPKMMEAVGVTYKEIITKLI 340


>gi|317057058|ref|YP_004105525.1| D-alanine/D-alanine ligase [Ruminococcus albus 7]
 gi|315449327|gb|ADU22891.1| D-alanine/D-alanine ligase [Ruminococcus albus 7]
          Length = 361

 Score =  137 bits (345), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 82/253 (32%), Positives = 138/253 (54%), Gaps = 17/253 (6%)

Query: 47  AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP 106
            ++K D  F VLHG  GEDG +Q I ++ EIP+    +++SA  MDK  +  ++ + GV 
Sbjct: 96  TNIKVDAVFPVLHGKNGEDGTIQGIFQMAEIPFVGCDLISSACCMDKDVTHTILEAHGVR 155

Query: 107 VCP---------SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
                       S L  +  +  + L  P YV KP   GSS+GI      + +   +   
Sbjct: 156 TAKWISMIYRDISKLDEKCRLMEKELGYPMYV-KPANCGSSVGITKAHDFEELKAGI--K 212

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDA---SLDVTEIAVPKSDFYSYELKYSSLNSTHV 214
            ++ H  ++++EQ ++GIEL C VMG+    +  V EIA   ++FY Y+ KY++ +S   
Sbjct: 213 LAFTHDHKVVVEQGINGIELECAVMGNDEPFASTVGEIAAA-NEFYDYDAKYNNSDSKTY 271

Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274
           +PA++P ++ +E++  A  A +A+GC G++R DF       +V   EIN  PG T +S++
Sbjct: 272 IPARVPDEVIEEIRETAVRAFKAMGCEGLARCDFFLSDKG-EVILNEINTLPGHTQISMY 330

Query: 275 PEMAAYAGYSFRE 287
           P++  + G S+ E
Sbjct: 331 PKLMEHEGISYAE 343


>gi|126664285|ref|ZP_01735276.1| D-alanylalanine synthetase [Flavobacteria bacterium BAL38]
 gi|126623705|gb|EAZ94402.1| D-alanylalanine synthetase [Flavobacteria bacterium BAL38]
          Length = 324

 Score =  137 bits (345), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 99/322 (30%), Positives = 168/322 (52%), Gaps = 34/322 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40
           +A++MGG SSE ++SL+SG    + +    F   +I +                    D 
Sbjct: 4   VAIIMGGYSSEYKISLTSGNVVFNNINRTKFNPYRIHIFKEKWVYVDENDAEFPIDKNDF 63

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           SV +    +  D+ FN +HG  GEDGL+QA  ELL IP T      +AL+ +K     V+
Sbjct: 64  SVVINGTKVNFDVVFNAIHGTPGEDGLMQAYFELLHIPQTSCDYYQAALTFNKRDMLSVL 123

Query: 101 SSCGVPVCPSILVNRF-TMDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
              G+    S  +N    ++ + +++    P  +KP K GSS GI  +K      L  ++
Sbjct: 124 KPYGIKTAESYYLNLGDDINVETILAKVGLPCFVKPNKSGSSFGISKVKTAAEF-LPAIE 182

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVM---GDAS-LDVTEIAVPKSDFYSYELKYSSLNST 212
            +++   D+++IE ++DG E++ GV+   G  + L +TEI V ++DF+ YE KY    S 
Sbjct: 183 -NAYKEDDEIIIESFLDGTEVSVGVIYYKGTITVLPITEI-VSENDFFDYEAKYLG-KSK 239

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
            + PA+I  ++  +++ ++  A++ +  +G SRS+F+   ++ + F LE+N  PG+T  S
Sbjct: 240 EITPARISDELKVKIETVSKRAYEVLKMKGFSRSEFII--VNNEPFMLEMNTIPGLTTES 297

Query: 273 IFPEMAAYAGYSFRELLLWMVE 294
           I P+ A  AG S  EL    +E
Sbjct: 298 ILPQQAREAGISLPELFENAIE 319


>gi|86144058|ref|ZP_01062396.1| D-alanylalanine synthetase [Leeuwenhoekiella blandensis MED217]
 gi|85829518|gb|EAQ47982.1| D-alanylalanine synthetase [Leeuwenhoekiella blandensis MED217]
          Length = 330

 Score =  137 bits (345), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 98/326 (30%), Positives = 166/326 (50%), Gaps = 38/326 (11%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40
           +AV+MGG SSE  +S+ SG      L+ + + V  I +                    D 
Sbjct: 6   IAVVMGGFSSEVNISILSGNTVCKHLDQSKYNVFPIHILKEGWFCKHADHKPIPVDKADF 65

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           S+ +    +  D  FN +HG  GEDG++QA L+LL IP T      +AL+ +K     V+
Sbjct: 66  SINVEGTKITFDCVFNTIHGTPGEDGILQAYLKLLNIPQTACNYYEAALTFNKRDCIGVL 125

Query: 101 SSCGVPVCPSILVNRFTMDSQHL------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154
            + G+    + L+N+   D+ H       +  P  +K  K GSS G+  +   +   L+ 
Sbjct: 126 KAYGIKTATNYLLNK--GDAIHATEILEQVGLPCFVKANKAGSSYGVSKVYGAEE--LEG 181

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVM---GDA-SLDVTEIAVPKSDFYSYELKYSSLN 210
               ++   D+++IE +++G E++ GV+   G+  +L VTEI V  +DF+ Y+ KY    
Sbjct: 182 AIEVAFKEDDEIIIESFLEGTEVSVGVINYQGNVMALPVTEI-VSDNDFFDYQAKYEG-K 239

Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270
           S  + PA+I  +  + VQR A    + +  +G++R++F+F   + +  +LE+N  PG++P
Sbjct: 240 SQEITPARITDEQTEAVQREAEKVFKILKLKGLTRAEFIFH--NGEPHFLEVNTTPGLSP 297

Query: 271 VSIFPEMAAYAGYSFRELLLWMVEDA 296
            SI P+ A  AG S  EL   ++E A
Sbjct: 298 ASIIPQQAKVAGISLPELFDNVIEQA 323


>gi|315227145|ref|ZP_07868932.1| D-alanine-D-alanine ligase [Parascardovia denticolens DSM 10105]
 gi|315119595|gb|EFT82728.1| D-alanine-D-alanine ligase [Parascardovia denticolens DSM 10105]
          Length = 405

 Score =  137 bits (344), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 87/280 (31%), Positives = 138/280 (49%), Gaps = 34/280 (12%)

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV 105
           L H+  D  F VLHG +GEDG +Q +LE++ +PY   G+LASA  MDK  +K ++ + G+
Sbjct: 125 LGHV--DAVFPVLHGPYGEDGTIQGLLEMMGLPYVGCGVLASAACMDKHYTKVLLKAAGI 182

Query: 106 PVCPSILVNRFTMDSQHLISP----------------PYVIKPLKGGSSLGIIVIK---- 145
           PV P I V+  + DS     P                P  +KP + GSS G+  +     
Sbjct: 183 PVAPGITVDTRSYDSAQGFDPQGKVLCDLVDEAGLRYPLFVKPSRAGSSFGVTKVDYKAD 242

Query: 146 -KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP--------- 195
             ++   L      +  H  ++L+E+ +   E+ C V+     D    + P         
Sbjct: 243 ATERQADLAAAVHEAARHDWRVLVEEGIKAREIECAVLAPRHGDKPRTSWPGEIVLDEPG 302

Query: 196 KSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
              FY ++ KY   +++HV +PAK+P +  +EV+R+A  A  A+   G+SR D  F    
Sbjct: 303 NGAFYDFDSKYMDSSASHVEVPAKLPQETLQEVRRVAARAFIAVDGDGLSRVD-TFVTEE 361

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             V   EIN  PG TP+S++ +     G S+REL+  ++E
Sbjct: 362 GTVIVNEINTLPGFTPISMYSKAWEATGVSYRELITTLIE 401


>gi|294787296|ref|ZP_06752549.1| D-alanine--D-alanine ligase [Parascardovia denticolens F0305]
 gi|294484652|gb|EFG32287.1| D-alanine--D-alanine ligase [Parascardovia denticolens F0305]
          Length = 400

 Score =  137 bits (344), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 87/280 (31%), Positives = 138/280 (49%), Gaps = 34/280 (12%)

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV 105
           L H+  D  F VLHG +GEDG +Q +LE++ +PY   G+LASA  MDK  +K ++ + G+
Sbjct: 120 LGHV--DAVFPVLHGPYGEDGTIQGLLEMMGLPYVGCGVLASAACMDKHYTKVLLKAAGI 177

Query: 106 PVCPSILVNRFTMDSQHLISP----------------PYVIKPLKGGSSLGIIVIK---- 145
           PV P I V+  + DS     P                P  +KP + GSS G+  +     
Sbjct: 178 PVAPGITVDTRSYDSAQGFDPQGKVLCDLVDEAGLRYPLFVKPSRAGSSFGVTKVDYKAD 237

Query: 146 -KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP--------- 195
             ++   L      +  H  ++L+E+ +   E+ C V+     D    + P         
Sbjct: 238 ATERQADLAAAVHEAARHDWRVLVEEGIKAREIECAVLAPRHGDKPRTSWPGEIVLDEPG 297

Query: 196 KSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
              FY ++ KY   +++HV +PAK+P +  +EV+R+A  A  A+   G+SR D  F    
Sbjct: 298 NGAFYDFDSKYMDSSASHVEVPAKLPQETLQEVRRVAARAFIAVDGDGLSRVD-TFVTEE 356

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             V   EIN  PG TP+S++ +     G S+REL+  ++E
Sbjct: 357 GTVIVNEINTLPGFTPISMYSKAWEATGVSYRELITTLIE 396


>gi|326792886|ref|YP_004310707.1| D-alanine/D-alanine ligase [Clostridium lentocellum DSM 5427]
 gi|326543650|gb|ADZ85509.1| D-alanine/D-alanine ligase [Clostridium lentocellum DSM 5427]
          Length = 350

 Score =  137 bits (344), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 99/346 (28%), Positives = 168/346 (48%), Gaps = 54/346 (15%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL---------------- 46
           +L GG SSE EVSL S     + ++ + ++V  + + +    +L                
Sbjct: 7   LLFGGCSSEHEVSLKSATTILNNIDRSIYEVHPVGITKEGKWLLYTGTNNDLSNNEWQKS 66

Query: 47  ---AHLKPD----------------------LAFNVLHGNFGEDGLVQAILELLEIPYTH 81
              A L PD                      + F VLHG  GEDG +Q + +L +IP+  
Sbjct: 67  GISAFLSPDATQKALWIFKGEGQESIKINIDIVFPVLHGKNGEDGTIQGLCQLAQIPFVG 126

Query: 82  SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--------QHLISPPYVIKPL 133
            G+LASA+SMDK  +K  V++  VP    +LV    +          +   S PY IKP 
Sbjct: 127 CGVLASAVSMDKAFTKIAVATKNVPQARFVLVKEPELKHMEETIKKIESAFSYPYFIKPA 186

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
             GSS+GI      + +   L ++    H  ++LIE+ + G E+   VMG+  + V+ + 
Sbjct: 187 NAGSSVGISKANNKEELISGLYEAVK--HDRKVLIEETIIGREVETAVMGNDEIVVSGVG 244

Query: 194 --VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
             +  ++FY ++ KY++  S  V+ A +P +I ++++  A     A+  +G+SR DF F 
Sbjct: 245 EILAAAEFYDFDAKYNNAESKTVVDADLPNEIKEKIRGYAKDVFDAVEGKGLSRVDF-FV 303

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
             + ++ + EIN  PG T +S++P + A  G S +E++  ++E AS
Sbjct: 304 KENGEIIFNEINTLPGFTSISMYPMLFAATGLSVKEIITKLLELAS 349


>gi|229818288|ref|ZP_04448569.1| hypothetical protein BIFANG_03588 [Bifidobacterium angulatum DSM
           20098]
 gi|229784158|gb|EEP20272.1| hypothetical protein BIFANG_03588 [Bifidobacterium angulatum DSM
           20098]
          Length = 377

 Score =  137 bits (344), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 85/274 (31%), Positives = 143/274 (52%), Gaps = 28/274 (10%)

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV 105
           L H+  D  F VLHG +GEDG VQ +LE++ +PY   G+ ASA  MDK  +K V+++ G+
Sbjct: 103 LGHI--DAVFPVLHGVYGEDGTVQGLLEMMGVPYVGCGVFASAACMDKHYTKIVLNAAGI 160

Query: 106 PVCPSILVNRFTMDSQHL--------ISPPYVIKPLKGGSSLGIIVI-----KKDQSIPL 152
           P  P I+V+      + +        ++ P  +KP + GSS G+  +     ++ Q   L
Sbjct: 161 PTAPGIMVDARHATGESVYDEVKKAKLAYPLFVKPSRAGSSFGVTKVEQADDEQAQIAAL 220

Query: 153 DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP-----------KSDFYS 201
           +   + +  H  ++L+EQ +D  E+ C V+  A  D  E + P              FY 
Sbjct: 221 EAAVAEAGKHDWKVLVEQGIDAREIECAVLCAAPGDEPEASWPGEIVLDHRDQGDDQFYD 280

Query: 202 YELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260
           ++ KY   +++HV +PA +P+ + ++V+ +A  A  A+   G+SR D    P    V   
Sbjct: 281 FDSKYMDSSASHVEVPANLPVSVLEDVRDVARRAFAAVDGAGLSRVDTFVTP-DGTVMVN 339

Query: 261 EINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           EIN  PG TP+S++P+    +G  + EL+  ++E
Sbjct: 340 EINTMPGFTPISMYPKAWDASGIGYTELITRLIE 373


>gi|311063700|ref|YP_003970425.1| d-alanine--d-alanine ligase DdlA [Bifidobacterium bifidum PRL2010]
 gi|310866019|gb|ADP35388.1| DdlA D-alanine--D-alanine ligase [Bifidobacterium bifidum PRL2010]
          Length = 381

 Score =  137 bits (344), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 84/278 (30%), Positives = 141/278 (50%), Gaps = 32/278 (11%)

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV 105
           L H+  D    VLHG +GEDG +Q +LE++++PY   G+LASA  MDK  +K ++++ G+
Sbjct: 103 LGHV--DAVLPVLHGPYGEDGTIQGLLEMMDVPYVGCGVLASAACMDKHYTKVLLAAAGI 160

Query: 106 PVCPSILVN--------RFTMDSQHLISP--------PYVIKPLKGGSSLGIIVIKKDQS 149
           PV P I V+        RF  D+  L++         P  +KP + GSS G+  ++    
Sbjct: 161 PVAPGITVDARGFDAASRFAADADGLLAQVEEAGLAYPLFVKPSRAGSSFGVTKVEHAGD 220

Query: 150 IPLDLLQSSSWNHGD-QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKS----------- 197
                      +H D ++LIEQ +D  E+ C V+   +    + + P             
Sbjct: 221 AAELAAAVFEASHHDWRILIEQGIDAREIECAVLCPKAGSEPQASWPGEIVLDKRNSGGD 280

Query: 198 DFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256
            FY ++ KY   +++HV +PA +P +  ++V+  A  A +A+   G+SR D    P   +
Sbjct: 281 QFYDFDSKYMDSSASHVEVPANLPQETLQQVRETAIKAFKAVDGAGLSRVDTFVTP-DGE 339

Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           V   EIN  PG TP+S++P+     G  + EL+  +++
Sbjct: 340 VMVNEINTMPGFTPISMYPKAWEATGIGYTELITKLID 377


>gi|229542519|ref|ZP_04431579.1| D-alanine/D-alanine ligase [Bacillus coagulans 36D1]
 gi|229326939|gb|EEN92614.1| D-alanine/D-alanine ligase [Bacillus coagulans 36D1]
          Length = 355

 Score =  137 bits (344), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 101/338 (29%), Positives = 157/338 (46%), Gaps = 47/338 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV----DRSVGLVLA--------- 47
           + +L GG S+E EVSL + KA   AL+   + +  I +    D   G +L          
Sbjct: 5   ICLLYGGKSAEHEVSLQTAKAVIQALDHEKYDIYPIFITTEGDWIKGPLLTGPVETVKQL 64

Query: 48  ------HLKP--------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87
                  + P              D+ F +LHG  GEDG VQ +LELL +PY  +G+LAS
Sbjct: 65  EFRDGKKMAPNALSTTVSGEKGGYDVIFPLLHGPNGEDGTVQGMLELLNLPYVGNGVLAS 124

Query: 88  ALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSS 138
           +  MDK+  K + +  G+     +   R   ++         +     P  +KP   GSS
Sbjct: 125 SAGMDKVIMKNLFAQAGLDQVKYVSFIRSEWENALETCFQQVEEKTGYPCFVKPANLGSS 184

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG--DASLDVTEIAVPK 196
           +GI   K      L+     ++ +  ++++E+ V   E+  GV+G  D    V    V K
Sbjct: 185 VGISKCK--NRTELEAAFKEAFQYDRKIIVEEGVTAREIELGVIGNDDPQCSVAGEIVAK 242

Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256
            DFY Y+ KY    +  ++PA IP  +YK+    A  A +A+ C G+ R+DF F     +
Sbjct: 243 KDFYDYKAKYEDGETALIIPADIPEKVYKKCTEAAITAFKALDCSGLVRADF-FVTEDER 301

Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           V   EIN  PG TP S+FP +   AG  + +L+  ++E
Sbjct: 302 VIINEINTMPGFTPFSMFPLLWKEAGLDYPQLIEKLIE 339


>gi|310829666|ref|YP_003962023.1| hypothetical protein ELI_4118 [Eubacterium limosum KIST612]
 gi|308741400|gb|ADO39060.1| hypothetical protein ELI_4118 [Eubacterium limosum KIST612]
          Length = 510

 Score =  137 bits (344), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 83/261 (31%), Positives = 137/261 (52%), Gaps = 14/261 (5%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+ F VLHG  GEDG +Q + EL+  PY   G+LASA  MDK+ SK +  S G+PV P +
Sbjct: 249 DVFFPVLHGPMGEDGTIQGLFELMNKPYVGCGVLASAAGMDKVASKMLFESAGIPVGPYV 308

Query: 112 LVNR--FTMDSQHLISP------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
              R  +  D   +I        P  IKP   GSS+GI      +     + ++  ++H 
Sbjct: 309 YFKRRDWEKDPDRIIDDIAGRGFPVFIKPSNMGSSVGISKAHNREEFIDGVNEALRYDH- 367

Query: 164 DQLLIEQYVDGIELTCGVM---GDASLDVTEIAVPKSDFYSYELKYS-SLNSTHVLPAKI 219
            ++++E +++  E+ C V+   G+    +    V   +FY YE KYS + +S  V+PA+I
Sbjct: 368 -KIVVEGFLNAREIECAVLEENGEIKAAIPGEVVASKEFYDYEAKYSDNQDSKIVIPAQI 426

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279
              + ++++  A  A + I    +SR DF     +  ++  EIN  PG T +S++P+M  
Sbjct: 427 SDALLEKIREYAIKAFEVIDGSSLSRVDFFVTRATYNIYINEINTMPGFTNISMYPKMWE 486

Query: 280 YAGYSFRELLLWMVEDASCLR 300
             G S+ EL+  +++ A+  R
Sbjct: 487 NMGVSYAELVEKLIQGAAVKR 507


>gi|84621981|ref|YP_449353.1| D-alanyl-alanine synthetase A [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|122879012|ref|YP_198991.6| D-alanyl-alanine synthetase A [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|84365921|dbj|BAE67079.1| D-alanine-D-alanine ligase A [Xanthomonas oryzae pv. oryzae MAFF
           311018]
          Length = 367

 Score =  137 bits (344), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 101/346 (29%), Positives = 166/346 (47%), Gaps = 55/346 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD--------------------- 39
           + ++ GG S+E EVSL S +    AL+   F+   I +D                     
Sbjct: 6   VGLIFGGKSAEHEVSLQSARNILDALDPQRFEPVLIGIDKQGQWHVNDPDSFLLHADDPA 65

Query: 40  --------RSVGLV----LAHLKP----------DLAFNVLHGNFGEDGLVQAILELLEI 77
                   R V L+       L+P          D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  RIALHRSGRGVALLPGAQQQQLRPIQPEQALAQIDVVFPIVHGTLGEDGSLQGLLRMANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT---MDSQHLISP---PYVIK 131
           P+  SG+L SA++MDK  +K+V+    + V P +  +R T    D   LI+    P  +K
Sbjct: 126 PFVGSGVLGSAVAMDKDMAKRVLRDARLAVAPFVCFDRHTAAHADVDTLIAQLGLPLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA--SLDV 189
           P   GSS+G+  ++   +    L  + +++H  ++L+E  V G E+ C V+G+A     V
Sbjct: 186 PANQGSSVGVSQVRTADAFAAALALALAYDH--KVLVEAAVAGREIECAVLGNAVPHASV 243

Query: 190 TEIAVPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               V    FYSY  KY S +    V+PA I     + +Q++A  A+QA+GC G++R D 
Sbjct: 244 CGEVVVHDAFYSYATKYISEHGAEIVIPADIDAQTQQRIQQIAVQAYQALGCAGMARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
                 R V   E+N  PG T +S++P++   +G  +R L+  ++E
Sbjct: 304 FLCADGRIVIN-EVNTLPGFTRISMYPKLWQASGLDYRGLITRLIE 348


>gi|297561190|ref|YP_003680164.1| D-alanine--D-alanine ligase [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
 gi|296845638|gb|ADH67658.1| D-alanine--D-alanine ligase [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
          Length = 326

 Score =  137 bits (344), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 102/304 (33%), Positives = 146/304 (48%), Gaps = 22/304 (7%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62
           VL GG+S E EVS+ SG+  A AL   G +V   DVD ++   L    P + F VLHG  
Sbjct: 19  VLAGGLSPEHEVSVHSGRGVAEALRRLGVEVQVADVDSTLLDRLVQDPPQVVFPVLHGAA 78

Query: 63  GEDGLVQAILELLEIPY--THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF---- 116
           GEDG ++ +LEL+ +PY     G    A S    ++        VP   ++  + F    
Sbjct: 79  GEDGAIREVLELVGVPYVGARPGGCRLAYSKPAAKALLAAEGVRVPRGAALPKSAFHDLG 138

Query: 117 ---TMDS-QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
               MD     +  P  +KP +GGS+ G   +   Q +   L+  S + + D  L+E+ V
Sbjct: 139 APALMDRLADRLGLPLFVKPDRGGSAFGAAPVGSVQELSAALV--SCFAYSDSALVEEQV 196

Query: 173 DGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
            G EL  GV+    G  +L   EI VP    Y Y  +Y++  +    PA++      E  
Sbjct: 197 QGTELAVGVLDTGDGPVALPPVEI-VPDGGVYDYAARYTAGRTEFFCPARLDPATVAEAT 255

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF--- 285
            +A  AH+ +G R +SR+D +     R V +LE NV PG+T  S FP  AA AG  F   
Sbjct: 256 EVALTAHRVLGLRDLSRTDVIVGTDGR-VTFLETNVAPGLTETSTFPMGAAAAGLDFAVA 314

Query: 286 -REL 288
            REL
Sbjct: 315 CREL 318


>gi|288929437|ref|ZP_06423282.1| D-alanine--D-alanine ligase [Prevotella sp. oral taxon 317 str.
           F0108]
 gi|288329539|gb|EFC68125.1| D-alanine--D-alanine ligase [Prevotella sp. oral taxon 317 str.
           F0108]
          Length = 330

 Score =  137 bits (344), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 98/329 (29%), Positives = 160/329 (48%), Gaps = 39/329 (11%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------------------- 40
           +A++ GG SSE EVSL S +   S  +   + V  +D++R                    
Sbjct: 5   IAIVCGGNSSEHEVSLRSARGLYSFFDKDKYNVYIVDIERMNWKVDLGNGEKATIDKNNF 64

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           S      H+  D A+  +HG  GE+G++Q   EL+++PY+ SG+L  AL+ DK      +
Sbjct: 65  SFEHEGTHVFFDYAYITIHGTPGENGIMQGYFELIDMPYSTSGVLVEALTFDKYVLNNYL 124

Query: 101 SSCGVPVCPSILVNR---FTMDSQHL---ISPPYVIKPLKGGSSLGIIVIKK-DQSIPLD 153
              GV V  SILV R   + +D + +   +  P  +KP   GSS G+  +K  DQ  P  
Sbjct: 125 RGFGVNVAKSILVRRGQEYGIDERAVEEQLGMPCFVKPAADGSSFGVSKVKNVDQLAP-- 182

Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCG---VMGDAS-LDVTEIAVPKSDFYSYELKYSSL 209
                +    D  +IE ++DG E++ G   V G+   L  TE+ V  ++F+ Y+ KY+  
Sbjct: 183 -ALRKALMEDDSAVIESFLDGTEISVGCYRVKGETKVLPATEV-VSHNEFFDYDAKYNG- 239

Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL---SRKVFWLEINVQP 266
               + PA+I  +  + V       ++ +GC GI R D++       + K+  +E+N  P
Sbjct: 240 QVEEITPARIADETARRVADETARIYELLGCNGIIRIDYILTKEPDGTDKINLIEVNTTP 299

Query: 267 GMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           GMTP S  P+    AG   +++L  +VE+
Sbjct: 300 GMTPTSFIPQQVRAAGMEMKDVLSDIVEN 328


>gi|310286804|ref|YP_003938062.1| D-alanine--D-alanine ligase [Bifidobacterium bifidum S17]
 gi|309250740|gb|ADO52488.1| D-alanine--D-alanine ligase [Bifidobacterium bifidum S17]
          Length = 381

 Score =  137 bits (344), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 84/278 (30%), Positives = 141/278 (50%), Gaps = 32/278 (11%)

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV 105
           L H+  D    VLHG +GEDG +Q +LE++++PY   G+LASA  MDK  +K ++++ G+
Sbjct: 103 LGHV--DAVLPVLHGPYGEDGTIQGLLEMMDVPYVGCGVLASAACMDKHYTKVLLAAAGI 160

Query: 106 PVCPSILVN--------RFTMDSQHLISP--------PYVIKPLKGGSSLGIIVIKKDQS 149
           PV P I V+        RF  D+  L++         P  +KP + GSS G+  ++    
Sbjct: 161 PVAPGITVDARGFDAASRFAADADGLLARVEEAGLAYPLFVKPSRAGSSFGVTKVEHAGD 220

Query: 150 IPLDLLQSSSWNHGD-QLLIEQYVDGIELTCGVMGDASLDVTEIAVP-----------KS 197
                      +H D ++LIEQ +D  E+ C V+   +    + + P             
Sbjct: 221 AAELAAAVFEASHHDWRILIEQGIDAREIECAVLCPKAGSEPQASWPGEIVLDKRNSGDD 280

Query: 198 DFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256
            FY ++ KY   +++HV +PA +P +  ++V+  A  A +A+   G+SR D    P   +
Sbjct: 281 QFYDFDSKYMDSSASHVEVPANLPQETLQQVRETAVKAFKAVDGAGLSRVDTFVTP-DGE 339

Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           V   EIN  PG TP+S++P+     G  + EL+  +++
Sbjct: 340 VMVNEINTMPGFTPISMYPKAWEATGIGYTELITKLID 377


>gi|282855332|ref|ZP_06264661.1| vancomycin/teicoplanin A-type resistance protein VanA (VanA ligase)
           (D-alanine--D-lactate ligase) [Pyramidobacter piscolens
           W5455]
 gi|282586831|gb|EFB92070.1| vancomycin/teicoplanin A-type resistance protein VanA (VanA ligase)
           (D-alanine--D-lactate ligase) [Pyramidobacter piscolens
           W5455]
          Length = 355

 Score =  137 bits (344), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 98/345 (28%), Positives = 162/345 (46%), Gaps = 50/345 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS------------------V 42
           +A+L GG SSE EVS  SG   A  ++   + +  I + +                    
Sbjct: 7   VALLFGGQSSEHEVSCVSGATVARNIDREKYDLLLIGITKEGRWLHVDSTDQIASGEWRR 66

Query: 43  GLVLAHLKPDLA--------------------FNVLHGNFGEDGLVQAILELLEIPYTHS 82
           G   A L PD A                    F VLHG +GEDG  Q I EL +IPY   
Sbjct: 67  GRRGAALLPDAALKSVLLSDGEKFSLARVDVLFPVLHGLYGEDGCPQGIAELAQIPYVGC 126

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--------QHLISPPYVIKPLK 134
            +L+SA +MDK  +K V++ CG+P        R  +D         +  +S P  +KP  
Sbjct: 127 DVLSSAATMDKATTKAVLARCGIPQARYAAFRREELDDMGGVVRRVESELSYPVFVKPSN 186

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA- 193
            GSS G+        +   L  +++ +   +++ E+ + G EL C ++G    + + +  
Sbjct: 187 AGSSCGVSKAGSRAQLVEALKLAAAQDC--KVIAEETIVGRELECALLGGWDAEASGVGE 244

Query: 194 -VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            +  ++FY Y+ KY S  S  V+   +P    +E++ +A    +A+ CRG+SR+DF  + 
Sbjct: 245 ILAGAEFYDYDAKYRSSASRTVVDPPLPPGKREEIRAMAKKIFRALDCRGLSRADFFLEK 304

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
            + +V + EIN  PG T +S++P++   AG    EL+  ++E A+
Sbjct: 305 DTDRVVFNEINTIPGFTAISMYPKLWEAAGVPLPELVEKLIESAA 349


>gi|254416646|ref|ZP_05030397.1| D-ala D-ala ligase N-terminal domain protein, putative [Microcoleus
           chthonoplastes PCC 7420]
 gi|196176612|gb|EDX71625.1| D-ala D-ala ligase N-terminal domain protein, putative [Microcoleus
           chthonoplastes PCC 7420]
          Length = 349

 Score =  137 bits (344), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 99/340 (29%), Positives = 165/340 (48%), Gaps = 49/340 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASAL----EDAGFKVSQIDVDRS--------VGLVLAH 48
           + +L GG S E EVS+ S +A A AL        ++V  I + +            VLA 
Sbjct: 6   IGLLFGGRSGEHEVSICSAQAIAKALSTPPNTEKYEVLPIYIQKDGIWQPPDIAHQVLAS 65

Query: 49  LKP-------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
             P                   ++ F +LHG  GEDG +Q +L L+++P   SG+L SA+
Sbjct: 66  GTPLEANGEGNLWQFPPQVADVEVWFPILHGPNGEDGTIQGLLTLMQVPCVGSGVLGSAM 125

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP------------PYVIKPLKGGS 137
           +MDK+  KQV    G+       ++R  + S   + P            P  +KP   GS
Sbjct: 126 AMDKIAMKQVFDQVGLAQVKHKGLSRAQVWSNPCVFPKLCDQIEETLGYPCFVKPANLGS 185

Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD---VTEIAV 194
           S+GI  ++    +   L  ++S++   ++++E  V   E+ C V+G+ +     V EI+ 
Sbjct: 186 SVGIAKVRSRSELETALDSAASYDR--RIIVEAGVVAREVECAVLGNDNPKASVVGEISY 243

Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
             SDFY YE KY+   +T  +PA +P  + +++Q +A  A  A+   G+SR DF +   +
Sbjct: 244 -TSDFYDYETKYTEGRATLSIPAPLPDSVSRQIQEMALQAFAAVDAAGLSRVDFFYVEAT 302

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            +V   E+N  PG T  S++P++ A  G  F +L+  ++E
Sbjct: 303 GEVLINEVNTLPGFTATSMYPQLWAATGVPFPQLVDQLIE 342


>gi|262200426|ref|YP_003271634.1| D-alanine/D-alanine ligase [Gordonia bronchialis DSM 43247]
 gi|262083773|gb|ACY19741.1| D-alanine/D-alanine ligase [Gordonia bronchialis DSM 43247]
          Length = 358

 Score =  137 bits (344), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 102/338 (30%), Positives = 161/338 (47%), Gaps = 49/338 (14%)

Query: 1   MAVLMGGISSEREVS-----------------------------LSSGKACASALEDAGF 31
           + VL GG+S+E +VS                             L + KA A AL D   
Sbjct: 8   LVVLFGGVSAEHDVSRVTAAHVLAAADRGKYELVPIGIAKDGTWLRNDKAIA-ALTDGTP 66

Query: 32  KVSQIDVDRSVGLVLAHL------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
               +DV  +V   L  L       P +   +LHG  GEDG +Q +LEL ++PY  +G+L
Sbjct: 67  LPDALDVAGTVVDPLTELAAHAADTPTVVLPLLHGPHGEDGTIQGMLELFKLPYVGAGVL 126

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILV-------NRFTMDSQHLISPPYVIKPLKGGSS 138
           +SAL MDK  +K V +  G+P C  +         N    D+   +  P  +KP   GSS
Sbjct: 127 SSALCMDKAMAKVVAAQAGIPQCRWLEFRDGVDDPNTIVADAVGQLGLPIFVKPANLGSS 186

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVP 195
           +GI   K      LD   + +  + + +++E+ V G E+   V+GD + + +   EI  P
Sbjct: 187 VGI--TKAHDEAELDTAINVALRYDNVVILEEAVTGREVEVAVLGDTAPETSVPGEIE-P 243

Query: 196 KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255
            S+FY YE KY +  +  V+PA +  +   +V+ LA     A+ C G++R DF ++   R
Sbjct: 244 GSEFYDYEDKYITGAAKLVIPAPLSEEATAQVRELASKTFTAMRCTGMARVDFFYEESGR 303

Query: 256 KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
                E+N  PG TP S++P++    G S+ +L+  +V
Sbjct: 304 GWLLNEVNTIPGFTPGSMYPKLWEATGISYPDLIDQLV 341


>gi|329956080|ref|ZP_08296851.1| D-ala D-ala ligase protein [Bacteroides clarus YIT 12056]
 gi|328524839|gb|EGF51893.1| D-ala D-ala ligase protein [Bacteroides clarus YIT 12056]
          Length = 324

 Score =  137 bits (344), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 92/323 (28%), Positives = 161/323 (49%), Gaps = 33/323 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKV-----------------SQIDVDR--- 40
           +A++ GG +SE EVSL S +   S ++   + +                 ++  VDR   
Sbjct: 5   IAIVCGGDTSEFEVSLRSAQGIYSFIDKERYTLYIVEMQGPDWHVQLPDGTKAPVDRNDF 64

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           S  L  A +  D A+  +HG  GEDG +Q   ++L IPY+  G+LA+AL+ DK    Q +
Sbjct: 65  SFRLSGAKVVFDFAYITIHGTPGEDGRLQGYFDMLHIPYSCCGVLAAALTYDKFACNQYL 124

Query: 101 SSCGVPVCPSILVNRFTMDSQH----LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
            + GV +  S+L+ +    S       I  P  IKP  GGSS G+  +   + I   +  
Sbjct: 125 KTFGVRIADSLLLRQGQSVSDEDVIGKIGLPCFIKPSLGGSSFGVTKVNTKEQIQPAI-- 182

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDAS----LDVTEIAVPKSDFYSYELKYSSLNST 212
           + ++    ++L+E +++G+E+TCG            +TE+ V  ++++ Y+ KY+   S 
Sbjct: 183 AKAFAEAKEVLVEAFMEGMEITCGCYKTKEKSVVFPITEV-VSHNEYFDYKAKYNG-ESD 240

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
            + PA+IP ++   VQ+L    +  +G  GI R D++      K+  LE+N  PGMT  S
Sbjct: 241 EITPARIPDELRDRVQKLTSAIYDILGASGIIRVDYIITE-GEKINLLEVNTTPGMTATS 299

Query: 273 IFPEMAAYAGYSFRELLLWMVED 295
             P+    A    ++++  ++E+
Sbjct: 300 FIPQQVRAANLDIKDVMTDIIEN 322


>gi|224282359|ref|ZP_03645681.1| D-alanyl-alanine synthetase A [Bifidobacterium bifidum NCIMB 41171]
          Length = 381

 Score =  137 bits (344), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 84/278 (30%), Positives = 141/278 (50%), Gaps = 32/278 (11%)

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV 105
           L H+  D    VLHG +GEDG +Q +LE++++PY   G+LASA  MDK  +K ++++ G+
Sbjct: 103 LGHV--DAVLPVLHGPYGEDGTIQGLLEMMDVPYVGCGVLASAACMDKHYTKVLLAAAGI 160

Query: 106 PVCPSILVN--------RFTMDSQHLISP--------PYVIKPLKGGSSLGIIVIKKDQS 149
           PV P I V+        RF  D+  L++         P  +KP + GSS G+  ++    
Sbjct: 161 PVAPGITVDARGFDAASRFAADADGLLARVEEAGLAYPLFVKPSRAGSSFGVTKVEHAGD 220

Query: 150 IPLDLLQSSSWNHGD-QLLIEQYVDGIELTCGVMGDASLDVTEIAVP-----------KS 197
                      +H D ++LIEQ +D  E+ C V+   +    + + P             
Sbjct: 221 AAELAAAVFEASHHDWRILIEQGIDAREIECAVLCPKAGSEPQASWPGEIVLDKRNSGDD 280

Query: 198 DFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256
            FY ++ KY   +++HV +PA +P +  ++V+  A  A +A+   G+SR D    P   +
Sbjct: 281 QFYDFDSKYMDSSASHVEVPANLPQETLQQVRETAVKAFKAVDGAGLSRVDTFVTP-DGE 339

Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           V   EIN  PG TP+S++P+     G  + EL+  +++
Sbjct: 340 VMVNEINTMPGFTPISMYPKAWEATGIGYTELITKLID 377


>gi|256020350|ref|ZP_05434215.1| D-alanyl-alanine synthetase A [Shigella sp. D9]
 gi|332281524|ref|ZP_08393937.1| D-alanyl-alanine synthetase A [Shigella sp. D9]
 gi|332103876|gb|EGJ07222.1| D-alanyl-alanine synthetase A [Shigella sp. D9]
          Length = 364

 Score =  137 bits (344), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 92/346 (26%), Positives = 171/346 (49%), Gaps = 55/346 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR--------SVGLVL-----A 47
           + ++ GG S+E EVSL S K    A++ + F V  + +D+        +   +L     A
Sbjct: 6   VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPA 65

Query: 48  H--LKP----------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
           H  L+P                            D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  HIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVIK 131
           P+  S +LASA  MDK  +K+++   G+ + P I + R   ++      +  +  P  +K
Sbjct: 126 PFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRNNISFAEVESKLGLPLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  +  ++   + +  +  ++H  ++++EQ + G E+ C V+G+ +   + 
Sbjct: 186 PANQGSSVGVSKVTSEEQYAIAVDLAFEFDH--KVIVEQGIKGREIECAVLGNDNPQAST 243

Query: 192 IA--VPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               V  SDFY+Y+ KY   +    V+PA I  +I  +++ +A  A+Q +GC G++R D 
Sbjct: 244 CGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
              P   +V   EIN  PG T +S++P++   +G  + +L+  ++E
Sbjct: 304 FLTP-ENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIE 348


>gi|288919619|ref|ZP_06413948.1| D-alanine/D-alanine ligase [Frankia sp. EUN1f]
 gi|288349017|gb|EFC83265.1| D-alanine/D-alanine ligase [Frankia sp. EUN1f]
          Length = 369

 Score =  136 bits (343), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 102/312 (32%), Positives = 155/312 (49%), Gaps = 24/312 (7%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS----------VGLVLAH--LK 50
           V+ GG S E EVSL+S  A   AL  AG  V+ + +DR           VGL  A   L+
Sbjct: 25  VIGGGTSCEHEVSLASAAAVTEALTAAGHAVAALTIDRDGQWRDHAGRLVGLAGAVEVLR 84

Query: 51  PDLA-FNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109
             +A   +LHG  GEDG + A+ EL  +PY  S + A AL+MDK  +K V  + GV   P
Sbjct: 85  SCVAAVPMLHGPGGEDGTLAALCELAGVPYVGSPVRAGALAMDKWATKLVAEAVGVRTAP 144

Query: 110 SILVNRFTMDSQHLISP-PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168
            ILVNR    +  +++P P V+KP+  GSS G+ ++     +   +  + + +  D++L+
Sbjct: 145 GILVNRARTAAGAVMAPLPAVVKPVSAGSSYGVSLVHDTAQLTAAVEAALTLD--DRVLV 202

Query: 169 EQYVDGIELTCGVMG--DASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           E+ V G E+   V+G  D +  V    EI    + F+    KY   ++  ++PA +    
Sbjct: 203 EEVVHGREIDLAVLGRPDGTRTVAPPLEIVTGHAGFFDLAAKYDG-SARFLVPAPLSDAQ 261

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283
              ++  A   + A+GC G++R DF            E+N  PG T  S  P M A AG 
Sbjct: 262 LGVLREAAVTVYDALGCAGVARVDFFL--TDAGPVLNEVNTMPGFTSHSQVPRMFAAAGV 319

Query: 284 SFRELLLWMVED 295
            + ELL  ++ D
Sbjct: 320 PYPELLELLIAD 331


>gi|193212474|ref|YP_001998427.1| D-alanyl-alanine synthetase A [Chlorobaculum parvum NCIB 8327]
 gi|238692634|sp|B3QMS4|DDL_CHLP8 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|193085951|gb|ACF11227.1| D-alanine/D-alanine ligase [Chlorobaculum parvum NCIB 8327]
          Length = 364

 Score =  136 bits (343), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 80/249 (32%), Positives = 133/249 (53%), Gaps = 13/249 (5%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-- 109
           D+AF  LHG++GEDG +Q  L+  +IPY   G+ +SALSMDK  +K   +  GV V    
Sbjct: 101 DVAFLTLHGSYGEDGKIQGCLDTFDIPYAGCGLTSSALSMDKALTKLCAADAGVEVAGFM 160

Query: 110 SILVNRFTMDSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
           S+    +  D Q + +        P  +KP   GSS+GI  +     +   L ++ + + 
Sbjct: 161 SVTSADYAADPQAICNAVTERFAFPVFVKPANLGSSVGISKVHNAAELRPALDKACALDA 220

Query: 163 GDQLLIEQYVDGIELTCGVMG--DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
             ++L+E+ + G E+   V+G  D    V    +P SDFY +E KY   ++  V+PA +P
Sbjct: 221 --KVLVEETITGREVEVAVLGNDDPIASVPGEIIPGSDFYDFEDKYVKSDAKLVIPADLP 278

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280
            ++   V+  A    +A+GC G++R DF  +  + ++   EIN  PG T +S++P + + 
Sbjct: 279 GEVSAAVRNAALTVFKALGCSGMARVDFFVEHGTNRIILNEINTIPGFTDISMYPMLMSA 338

Query: 281 AGYSFRELL 289
           +G  F EL+
Sbjct: 339 SGVEFDELI 347


>gi|239825776|ref|YP_002948400.1| D-alanyl-alanine synthetase A [Geobacillus sp. WCH70]
 gi|239806069|gb|ACS23134.1| D-alanine/D-alanine ligase [Geobacillus sp. WCH70]
          Length = 364

 Score =  136 bits (343), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 102/346 (29%), Positives = 165/346 (47%), Gaps = 56/346 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------DRSVGLV------ 45
           + +L GG S E  VSLS+  A  +A++   F V  I +         +R  G V      
Sbjct: 5   VGILYGGKSPEHNVSLSTAMAVMNAIDKNKFDVIPIYITTEGQWIKGERLTGKVNDIKQL 64

Query: 46  -------------------LAHLKP------DLAFNVLHGNFGEDGLVQAILELLEIPYT 80
                              +A  K       D+ F +LHG  GEDG VQ +LELL IPY 
Sbjct: 65  QFQSDAKAIIPVALNQTPAVADGKKQEEAVVDVIFPLLHGPNGEDGTVQGLLELLNIPYV 124

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR----------FTMDSQHLISPPYVI 130
            +G+LASA+ MDK+  K + +  G+     +   +          +    Q L  P +V 
Sbjct: 125 GNGVLASAVGMDKVVMKNLFAQAGLRQAKYVSFTKREWSRNEEAAYDKVEQELGYPCFV- 183

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG--DASLD 188
           KP   GSS+GI   K  Q   L    + ++ +  ++++E+ + G E+  GV+G  D    
Sbjct: 184 KPANAGSSVGITKCK--QRDDLKAAFAEAFKYDRKIIVEEAIVGREIEIGVIGNDDPICS 241

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           V    VPK +FY Y+ KY   N+  ++PA +  + Y+ ++++A  A +A+   G+ R+DF
Sbjct: 242 VVGEIVPKKEFYDYQAKYEDGNTELIIPADVTKEQYETIKQMAITAFKALDLSGLVRADF 301

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
                  + +  EIN  PG TP S+FP +  ++G S+ EL+  +++
Sbjct: 302 FLTE-DGEAYINEINTMPGFTPYSMFPLLWKHSGVSYPELIERLIQ 346


>gi|171316210|ref|ZP_02905433.1| D-alanine/D-alanine ligase [Burkholderia ambifaria MEX-5]
 gi|171098624|gb|EDT43421.1| D-alanine/D-alanine ligase [Burkholderia ambifaria MEX-5]
          Length = 275

 Score =  136 bits (343), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 87/251 (34%), Positives = 138/251 (54%), Gaps = 18/251 (7%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-VDRSVGLVLAHLKPD---LAFN 56
           +AVL GG S+EREVSL+SG+     L DAG      D  +R     L+ LK +    AFN
Sbjct: 12  VAVLFGGESAEREVSLTSGRLVLQGLRDAGIDAHPFDPAERP----LSALKDEGFVRAFN 67

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR- 115
            LHG +GE+G +Q  L+   I YT SG+L SAL +DK R+K V    GVP  P   V R 
Sbjct: 68  ALHGGYGENGQIQGALDFYGIRYTGSGVLGSALGLDKFRTKLVWQQTGVPTPPFETVMRG 127

Query: 116 --FTMDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
             +   +  +++    P  +KP   GSS+ ++ +K   ++P  L ++++  H   +++E+
Sbjct: 128 DDYAARATDIVAKLGLPLFVKPASEGSSVAVLKVKTADALPAALSEAAT--HDKIVIVEK 185

Query: 171 YVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
            ++ G E T  + GD  L + +I VP  +FY Y  KY + ++ +++P  +P     E++R
Sbjct: 186 SIEGGGEYTACIAGDLDLPLIKI-VPAGEFYDYHAKYVADDTQYLIPCGLPAQQEAELKR 244

Query: 230 LAFLAHQAIGC 240
           +A  A   +GC
Sbjct: 245 IARRAFDVLGC 255


>gi|94676718|ref|YP_588832.1| D-ala D-ala ligase [Baumannia cicadellinicola str. Hc (Homalodisca
           coagulata)]
 gi|166198474|sp|Q1LT82|DDL_BAUCH RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|94219868|gb|ABF14027.1| D-ala D-ala ligase [Baumannia cicadellinicola str. Hc (Homalodisca
           coagulata)]
          Length = 375

 Score =  136 bits (343), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 99/348 (28%), Positives = 169/348 (48%), Gaps = 59/348 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS------------------- 41
           + ++ GG S+E EVSL S K     +++  F+V    +D+                    
Sbjct: 6   VGIIFGGQSAEHEVSLQSAKNIVETIDENKFEVVLFGIDKEGQWHINNKLNYLIYGENET 65

Query: 42  ------------------------VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEI 77
                                   + ++   ++ D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  YIALNKSNKHIAIIPGRKHDQFIQIDMLEQLVQLDVIFPIVHGTLGEDGNLQGLLRMANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL---VNRFTMDSQHLIS---PPYVIK 131
           P+  S +L SA+SMDK  +K+++    + V PSI    +NR       +I+       +K
Sbjct: 126 PFVGSTVLGSAVSMDKDIAKRLLRDADLEVTPSITLTRINRENFSYDQIITYLGSSLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD----ASL 187
           P   GSS+G  V K    I  D   + ++   D++L+E  ++G EL C V+G+    ASL
Sbjct: 186 PANQGSSVG--VSKVINRISFDQALALAFCFDDKVLVESAINGRELECAVLGNHDPQASL 243

Query: 188 DVTEIAVPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRS 246
              EI V   +FYSYE KY +   +  V+PA I  ++   +Q++A  A QA+ C G++R 
Sbjct: 244 -CGEI-VLSDNFYSYEKKYLNEHGAVVVVPAAISKEVSNNIQKIAVRAFQALNCTGMARV 301

Query: 247 DFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           D +F   + KV   E+N  PG T +S++P++   +G S+  L+  ++E
Sbjct: 302 D-VFLTTNNKVLVNEVNTSPGFTSISMYPKLWQASGISYPALITRLIE 348


>gi|302865845|ref|YP_003834482.1| D-alanine/D-alanine ligase [Micromonospora aurantiaca ATCC 27029]
 gi|315502390|ref|YP_004081277.1| d-alanine/d-alanine ligase [Micromonospora sp. L5]
 gi|302568704|gb|ADL44906.1| D-alanine/D-alanine ligase [Micromonospora aurantiaca ATCC 27029]
 gi|315409009|gb|ADU07126.1| D-alanine/D-alanine ligase [Micromonospora sp. L5]
          Length = 367

 Score =  136 bits (343), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 82/257 (31%), Positives = 136/257 (52%), Gaps = 15/257 (5%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+ F VLHG +GEDG +Q +LE+ +IPY  + + ASA +MDK  +K++ ++ G+PV P  
Sbjct: 107 DVVFPVLHGAYGEDGTIQGMLEMADIPYVGANVFASAAAMDKEFTKKLCAAEGIPVGPYA 166

Query: 112 LVN---RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168
           ++      + + +  +  P  +KP + GSS GI   K D    LD    ++     ++L+
Sbjct: 167 VLRAGMSLSDEDKERLGLPVFVKPSRAGSSFGI--TKVDDWADLDAALVTAREIDSKVLV 224

Query: 169 EQYVDGIELTCGVMGDASLDVTEIAV-------PKSDFYSYELKYSSLNST--HVLPAKI 219
           E  V G E+ CGV+   +    E +V          D+Y +E KY   +    + +PA +
Sbjct: 225 EGAVVGREIECGVLEGEAGGAPEASVLAEVRMIGDRDWYDFEAKYIFADEVCEYDVPADL 284

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279
           P  + ++V+  A  A  A+ C G++R DF   P    V+  EIN  PG TP S+FP M +
Sbjct: 285 PEPVARQVRDYATRAFTALDCSGLARVDFFVTP-QMDVYLNEINTMPGFTPTSMFPRMWS 343

Query: 280 YAGYSFRELLLWMVEDA 296
            +G  + +L+  ++  A
Sbjct: 344 ASGLEYPKLVNRLIRTA 360


>gi|254392473|ref|ZP_05007653.1| D-alanine-D-alanine ligase [Streptomyces clavuligerus ATCC 27064]
 gi|294815338|ref|ZP_06773981.1| D-alanine-D-alanine ligase [Streptomyces clavuligerus ATCC 27064]
 gi|326443692|ref|ZP_08218426.1| D-alanyl-alanine synthetase A [Streptomyces clavuligerus ATCC
           27064]
 gi|197706140|gb|EDY51952.1| D-alanine-D-alanine ligase [Streptomyces clavuligerus ATCC 27064]
 gi|294327937|gb|EFG09580.1| D-alanine-D-alanine ligase [Streptomyces clavuligerus ATCC 27064]
          Length = 390

 Score =  136 bits (343), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 90/266 (33%), Positives = 134/266 (50%), Gaps = 29/266 (10%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+ F VLHG +GEDG +Q +LEL  +PY  +G+L+SA+  DK   K+V +S G+PV P  
Sbjct: 125 DVVFPVLHGPYGEDGTLQGLLELAGVPYVGAGVLSSAVGQDKEYMKRVFTSFGLPVGPYT 184

Query: 112 LVN----------------RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
           ++                  FT D       P  +KP + GSS+GI   K D    LD  
Sbjct: 185 VIRPREWEQDASAARKKIVDFTGDHGW----PVFVKPARAGSSIGI--TKVDDLSGLDEA 238

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMG-----DASLDVTEIAVPKSDFYSYELKYSSLN 210
              +  H  ++L+E  + G E+ CGV+       AS+      V   DFY +E KY   +
Sbjct: 239 IEEARRHDPKILVEALLRGREIECGVLEFEDGPRASVPAEIPPVQSHDFYDFEAKYID-S 297

Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270
           ++ ++PA +  +   EV+RLA  A  A  C G+ R+DF        V   EIN  PG TP
Sbjct: 298 ASGIVPAPLTEEQTAEVRRLAVAAFDAASCEGLVRADFFLTEDGEFVI-NEINTMPGFTP 356

Query: 271 VSIFPEMAAYAGYSFRELLLWMVEDA 296
           +S++P M    G  + EL+  +++ A
Sbjct: 357 ISMYPRMWQETGVGYAELVDRLIQAA 382


>gi|81427664|ref|YP_394661.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)
           [Lactobacillus sakei subsp. sakei 23K]
 gi|123564944|sp|Q38ZM8|DDL_LACSS RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|78609303|emb|CAI54349.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)
           [Lactobacillus sakei subsp. sakei 23K]
          Length = 350

 Score =  136 bits (343), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 96/342 (28%), Positives = 163/342 (47%), Gaps = 53/342 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------------------- 38
           + VL GG S+ER VSL+SG     AL+  G  V+ +D+                      
Sbjct: 3   IVVLAGGRSTERNVSLTSGHKITHALQTKGHDVAFVDLFLGNELKDGATIDSLYSSDPVE 62

Query: 39  --------------------DRSVGLVLAHL-----KPDLAFNVLHGNFGEDGLVQAILE 73
                               D S  L   ++       D+ F  LHG  GE+G VQA+L+
Sbjct: 63  KDYDIDDEVLTDDDINKLREDGSTQLFGPNVLEICKTADIVFLALHGGDGENGKVQAVLD 122

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPL 133
           + EIPYT S  LA+ ++M K  SK+++    +P    +   R     +     P V+KP 
Sbjct: 123 VFEIPYTGSDTLAAGITMSKKVSKEILLFNNIPTARFVAAYRHQPMPEMPFEYPVVVKPS 182

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
            GGSS+G  ++  +  +   +  +  ++  ++ LIE+++ G E + GV+ +  L   EI 
Sbjct: 183 NGGSSVGTHIVHNEAELKPAVEDALRFD--NEALIEEFIKGREFSLGVINEQPLPAIEIE 240

Query: 194 VPKSDFYSYELKYSSLNSTHVL--PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
           V    +Y +E K+ + N+T  +  P  +P D+++ ++++A  A  A+G    +R DF + 
Sbjct: 241 V-NDGWYDFEHKFVTGNTTKFVTPPNNLPDDVHEAMKQMALDAMHALGLTNYARIDFFWS 299

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           P    ++ +E N  PGMTP+S+ P+ A   G S+ +L   +V
Sbjct: 300 P-ETGLYVIEGNTLPGMTPLSLIPQEAEVLGISYPDLCEMIV 340


>gi|58698111|ref|ZP_00373034.1| D-alanine-D-alanine ligase [Wolbachia endosymbiont of Drosophila
           ananassae]
 gi|58535357|gb|EAL59433.1| D-alanine-D-alanine ligase [Wolbachia endosymbiont of Drosophila
           ananassae]
          Length = 213

 Score =  136 bits (343), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 74/193 (38%), Positives = 121/193 (62%), Gaps = 3/193 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +A+L GG S ERE+SL SGKA   AL+   +   +IDVD ++   L  + P LAF  LHG
Sbjct: 7   IAILSGGFSCEREISLMSGKAVKKALDSLSYNAIEIDVDSNIAEKLKKINPGLAFIALHG 66

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG +Q +LE+L I YTHSG++ASA++++K+ SK +  S  +      +++R  +  
Sbjct: 67  PYGEDGCIQGLLEILGIKYTHSGVMASAVAINKVMSKHIFRSLNIDTPKGYVISREDVLK 126

Query: 121 QHL-ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
            ++ I  PYV+KP+  GSS+G+ +I   +   L+L  +SS    +++++E+Y+ GIEL  
Sbjct: 127 NNIKIDYPYVLKPINEGSSIGVYIIFSHEDY-LELKDNSS-TIMEKMIVEEYIPGIELHT 184

Query: 180 GVMGDASLDVTEI 192
            V+ D ++   E+
Sbjct: 185 AVLLDEAIGTIEV 197


>gi|313139503|ref|ZP_07801696.1| D-alanine-D-alanine ligase [Bifidobacterium bifidum NCIMB 41171]
 gi|313132013|gb|EFR49630.1| D-alanine-D-alanine ligase [Bifidobacterium bifidum NCIMB 41171]
          Length = 394

 Score =  136 bits (343), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 84/278 (30%), Positives = 141/278 (50%), Gaps = 32/278 (11%)

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV 105
           L H+  D    VLHG +GEDG +Q +LE++++PY   G+LASA  MDK  +K ++++ G+
Sbjct: 116 LGHV--DAVLPVLHGPYGEDGTIQGLLEMMDVPYVGCGVLASAACMDKHYTKVLLAAAGI 173

Query: 106 PVCPSILVN--------RFTMDSQHLISP--------PYVIKPLKGGSSLGIIVIKKDQS 149
           PV P I V+        RF  D+  L++         P  +KP + GSS G+  ++    
Sbjct: 174 PVAPGITVDARGFDAASRFAADADGLLARVEEAGLAYPLFVKPSRAGSSFGVTKVEHAGD 233

Query: 150 IPLDLLQSSSWNHGD-QLLIEQYVDGIELTCGVMGDASLDVTEIAVP-----------KS 197
                      +H D ++LIEQ +D  E+ C V+   +    + + P             
Sbjct: 234 AAELAAAVFEASHHDWRILIEQGIDAREIECAVLCPKAGSEPQASWPGEIVLDKRNSGDD 293

Query: 198 DFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256
            FY ++ KY   +++HV +PA +P +  ++V+  A  A +A+   G+SR D    P   +
Sbjct: 294 QFYDFDSKYMDSSASHVEVPANLPQETLQQVRETAVKAFKAVDGAGLSRVDTFVTP-DGE 352

Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           V   EIN  PG TP+S++P+     G  + EL+  +++
Sbjct: 353 VMVNEINTMPGFTPISMYPKAWEATGIGYTELITKLID 390


>gi|326203283|ref|ZP_08193148.1| D-alanine/D-alanine ligase [Clostridium papyrosolvens DSM 2782]
 gi|325986541|gb|EGD47372.1| D-alanine/D-alanine ligase [Clostridium papyrosolvens DSM 2782]
          Length = 376

 Score =  136 bits (343), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 81/260 (31%), Positives = 146/260 (56%), Gaps = 18/260 (6%)

Query: 50  KP-DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
           KP D+ F VLHG  GEDG +Q + EL  IPY   G+L +A+ MDK  SK +    G+P  
Sbjct: 102 KPIDVVFPVLHGCNGEDGTIQGLFELAGIPYVGCGVLGAAVGMDKAYSKIIFEKEGLPQG 161

Query: 109 PSILVNRFTMDS---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             ++ NR  +++         +  ++ P  +KP   GSS+G+      +S+   L+ ++ 
Sbjct: 162 DYLVFNRKQVNNRLEEAVAQVESTLTYPCFVKPANAGSSVGVNKASDRESLEKALIIAAK 221

Query: 160 WNHGDQLLIEQYVDGIELTCGVMGD---ASLDVTEIAVPKSDFYSYELKYSSLNSTH-VL 215
            +   ++L+E+++DG E+ C V+G+    +  V E+ VP ++FY YE KY   +S+  V+
Sbjct: 222 NDR--RILVEEFIDGREIECAVLGNDEPVASTVGEV-VPCNEFYDYEAKYQVGDSSKVVI 278

Query: 216 PAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274
           PA+ +  +  ++++  A  A + + C G+SR DF     +  ++  EIN  PG T +S++
Sbjct: 279 PAENLSTETVEKIREYAVRAFKCLDCAGLSRVDFFVHKDTGAIYINEINTLPGFTSISMY 338

Query: 275 PEMAAYAGYSFRELLLWMVE 294
           P++ A +G  + +L+  ++E
Sbjct: 339 PKLWAASGIPYSQLIDKLIE 358


>gi|166032106|ref|ZP_02234935.1| hypothetical protein DORFOR_01809 [Dorea formicigenerans ATCC
           27755]
 gi|166027829|gb|EDR46586.1| hypothetical protein DORFOR_01809 [Dorea formicigenerans ATCC
           27755]
          Length = 355

 Score =  136 bits (343), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 102/353 (28%), Positives = 164/353 (46%), Gaps = 59/353 (16%)

Query: 3   VLMGGISSEREVSLSSGKA-CASALED----------------------------AGFKV 33
           VL GG+S ER+VSL+SG   C + LE+                            AG ++
Sbjct: 5   VLAGGLSPERDVSLTSGAGICKTLLENGHQAYLLDLYFGLENAPANLEDVFTLPGAGLEI 64

Query: 34  SQIDVDRSVGL-VLAHLKPD------------------LAFNVLHGNFGEDGLVQAILEL 74
           ++    +   L  L   +PD                  + F  LHG+ GE+G +QA  +L
Sbjct: 65  AKNISTKEPDLEALKKSRPDQSDCMFGPNVIELCRMADITFVALHGSVGENGKLQAAFDL 124

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD---SQHLISPPYVIK 131
           L I YT       ALSM+K+ +KQ+    GVP      + ++T D   S+     P V+K
Sbjct: 125 LGIKYTGCNSFGCALSMNKLVTKQIYKMSGVPTPRGTHLTKYTKDLPLSELGYYLPLVVK 184

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P + GSS+G+ +   ++     + +S   N  ++L+IE Y+ G E    V+   +L + E
Sbjct: 185 PCENGSSIGVYICHTEEEYNNAVRESFEKNPDEELVIEPYIKGREFASAVIAGKALPLVE 244

Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ----RLAFLAHQAIGCRGISRSD 247
           I +PK   ++YE KY +  +  + P   P+ I +E Q    R    A  A+     +R+D
Sbjct: 245 I-IPKDGVFNYENKYQAGGAQEICP---PVSIDEETQQRMMRAGEEAFAALRMDVYARAD 300

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           F+ D    + + LE+N  PGMT  S+ P+ A  AG  + EL   ++E++   R
Sbjct: 301 FIIDDEDGEFYSLEMNALPGMTAASLLPKAAKAAGIEYNELCERIIEESMNAR 353


>gi|326385117|ref|ZP_08206786.1| D-alanine/D-alanine ligase [Gordonia neofelifaecis NRRL B-59395]
 gi|326196150|gb|EGD53355.1| D-alanine/D-alanine ligase [Gordonia neofelifaecis NRRL B-59395]
          Length = 357

 Score =  136 bits (343), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 97/336 (28%), Positives = 164/336 (48%), Gaps = 46/336 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44
           + VL GG+S+E +VS  S     +A + + +++  + +D+                    
Sbjct: 8   LVVLYGGVSAEHDVSRVSAAHVLAAADRSKYQLIPVGIDKRGAWHRNDAAAEALAAGAEL 67

Query: 45  ---------------VLAHLKPDLA--FNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87
                          VLA    DL   F +LHG  GEDG VQ +LEL ++PY   G+LAS
Sbjct: 68  PNSLDVDGPEVNPLQVLAGSPEDLTVVFPLLHGPHGEDGTVQGMLELFKLPYIGCGVLAS 127

Query: 88  ALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP-------PYVIKPLKGGSSLG 140
           ++ MDK  +K+V +   +P C  +       D + +++        P  +KP   GSS+G
Sbjct: 128 SVCMDKAMAKEVAARAEIPQCKWLTFRDGVDDPRQILTDAADQLGFPMFVKPANMGSSVG 187

Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKS 197
             V + +    LD   + +  + D ++IE+ V G E+   V+G+A+ D +   E+  P S
Sbjct: 188 --VSRAETLEELDAAINVALRYDDVVVIEEAVVGREIEVAVLGNAAPDASLPGEVK-PGS 244

Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
           +FY YE KY +  +  ++PA +  +   +V+ LA  A  A+ C G++R DF ++   R  
Sbjct: 245 EFYDYEDKYITGAAELMIPAPLSDEAIADVRELAADAFVALRCAGLARVDFFYEEGGRGW 304

Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
              E+N  PG TP S++P+M    G  + +L+  +V
Sbjct: 305 LLNEVNTIPGFTPASMYPKMWEATGIGYSDLIDRLV 340


>gi|291166569|gb|EFE28615.1| D-alanine--D-alanine ligase [Filifactor alocis ATCC 35896]
          Length = 353

 Score =  136 bits (343), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 76/253 (30%), Positives = 138/253 (54%), Gaps = 10/253 (3%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+ F  LHG  GEDG +Q ++E + IPY     ++SA+ MDK  +K++V   GV   P +
Sbjct: 95  DVVFPALHGPNGEDGKLQGLMEFVNIPYVGCNSISSAICMDKEITKRLVGIEGVRQVPYV 154

Query: 112 LVNRFTMDSQHL-----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQL 166
           ++    +  + L     I  P  +KP   GSS+G+   +  Q +   +  +S ++  D++
Sbjct: 155 ILYEGVVAEEKLLEMEEIGYPLFVKPANMGSSVGVSKAENQQELLQAIRVASKYD--DKV 212

Query: 167 LIEQYVDGIELTCGVMGD---ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           ++E+ +D +EL    +GD   A         P+  FY Y+ KY + ++   +PA I  + 
Sbjct: 213 IVEKGIDALELEIAALGDGKDAYFSTVGCIKPRDIFYDYDSKYLTNDADFYIPAPISFEK 272

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283
             E++ +A  A+ A+ C G+SR DF  D  ++++++ EIN  PG T +S++P++  Y G 
Sbjct: 273 ETELREMARKAYTAMLCEGLSRIDFFMDKETQEIYFNEINTMPGFTAISLYPQLMDYDGV 332

Query: 284 SFRELLLWMVEDA 296
             +EL+  +++ A
Sbjct: 333 GAKELIGRLIDYA 345


>gi|260596746|ref|YP_003209317.1| D-alanine--D-alanine ligase A [Cronobacter turicensis z3032]
 gi|260215923|emb|CBA28502.1| D-alanine--D-alanine ligase A [Cronobacter turicensis z3032]
          Length = 366

 Score =  136 bits (343), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 94/347 (27%), Positives = 168/347 (48%), Gaps = 57/347 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------------------- 40
           + ++ GG S+E EVSL S K    A++   F V  + +D+                    
Sbjct: 6   VGIVFGGKSAEHEVSLQSAKNIVDAIDKEKFDVVLLGIDKQGQWHVNDASRYLLNAEDPA 65

Query: 41  ---------SVGLV--------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEI 77
                    +V L+               A  + D+ F ++HG  GEDG +Q +L +  I
Sbjct: 66  RIALHRSEKNVALIPGLSQQQLIESDNRQALPQLDVIFPIVHGTLGEDGSLQGMLRMANI 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLISPPYVIK 131
           P+  SG+L SA+SMDK  +K+++   G+ V P I + R         + +  +  P  +K
Sbjct: 126 PFVGSGVLGSAVSMDKDVAKRLLRDAGLAVAPFITLTRANRQRITFAEVKAQLGLPLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT- 190
           P   GSS+G+  +  +      +  +  ++H  ++++E  + G E+ C V+G+     + 
Sbjct: 186 PANQGSSVGVSKVNDEAQYHAAVALAFEFDH--KVVVETGIKGREIECAVLGNEEPQAST 243

Query: 191 --EIAVPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
             EI V  S+FYSY+ KY    +   V+PA I  D+ ++++ +A  A QA+ C G++R D
Sbjct: 244 CGEIVV-SSEFYSYDTKYIDDQAARVVVPADIAPDVNEKIRAIAVRAFQALECAGLARVD 302

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
               P   +V   EIN  PG T +S++P++   +G  +++L+  ++E
Sbjct: 303 VFLTP-DNEVIINEINTLPGFTNISMYPKLWQASGMGYQQLITRLIE 348


>gi|313207065|ref|YP_004046242.1| D-alanine--D-alanine ligase [Riemerella anatipestifer DSM 15868]
 gi|312446381|gb|ADQ82736.1| D-alanine--D-alanine ligase [Riemerella anatipestifer DSM 15868]
          Length = 327

 Score =  136 bits (342), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 99/325 (30%), Positives = 168/325 (51%), Gaps = 35/325 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40
           +AV+MGG S E +VSL SG+    +L+   + V ++ V                    D 
Sbjct: 6   IAVVMGGYSDEYKVSLKSGQLIYDSLDRDLYNVYKVVVLKEGWFYLDENEAKLPIQKGDF 65

Query: 41  SVGLVLAH-LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
           SV L     L+ D+ FN +HG  GE+G++QA  + +   YT      SAL+ +K  +  V
Sbjct: 66  SVNLPSGEVLRFDVCFNTIHGTPGENGVLQAYWDAIGQKYTGCDFYQSALTFNKKDTLAV 125

Query: 100 VSSCGVPVCPSILVNR-FTMDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
           ++  G+P   S  + +    D   +I+    P  +KP + GSSLGI  +K+       L 
Sbjct: 126 LAKYGIPSAKSFYIKKGEAYDKDKIINELKLPLFVKPNQSGSSLGISKVKEVSEFEAAL- 184

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVM---GDA-SLDVTEIAVPKSDFYSYELKYSSLNS 211
              ++   D++L+E ++DG+E++ GV+   G+   L +TEI +P+++F+ YE KY    S
Sbjct: 185 -EKAFLEDDEVLVESFLDGMEVSVGVLDYKGETIVLGITEI-IPETEFFDYEAKYQGA-S 241

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271
             + PA++       V+ +A  A+ ++G +G SRS+++   ++   + LE+N  PG +P 
Sbjct: 242 QEITPARLDEATRLRVEEVAKRAYNSLGMKGFSRSEYII--MNGVPYMLEMNTNPGFSPA 299

Query: 272 SIFPEMAAYAGYSFRELLLWMVEDA 296
           SI P+ A   G S ++L    VE A
Sbjct: 300 SILPQQARIYGISIKDLCGNEVEKA 324


>gi|300924095|ref|ZP_07140089.1| D-ala D-ala ligase [Escherichia coli MS 182-1]
 gi|301330768|ref|ZP_07223366.1| D-ala D-ala ligase [Escherichia coli MS 78-1]
 gi|300419691|gb|EFK03002.1| D-ala D-ala ligase [Escherichia coli MS 182-1]
 gi|300843281|gb|EFK71041.1| D-ala D-ala ligase [Escherichia coli MS 78-1]
          Length = 364

 Score =  136 bits (342), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 95/349 (27%), Positives = 172/349 (49%), Gaps = 61/349 (17%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR--------SVGLVL-----A 47
           + ++ GG S+E EVSL S K    A++ + F V  + +D+        +   +L     A
Sbjct: 6   VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPA 65

Query: 48  H--LKP----------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
           H  L+P                            D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  HIALRPSATSLAQVPGKHEHQLIDAQNGQPLLTVDVIFAIVHGTLGEDGSLQGMLRVANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS---------PPY 128
           P+  S +LASA  MDK  +K+++   G+ + P I + R    ++H IS          P 
Sbjct: 126 PFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRA---NRHNISFAEVESKLGLPL 182

Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD 188
            +KP   GSS+G+  +  ++   + +  +  ++H  ++++EQ + G E+ C V+G+ +  
Sbjct: 183 FVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDH--KVIVEQGIKGREIECAVLGNDNPQ 240

Query: 189 VTEIA--VPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
            +     V  SDFY+Y+ KY   +    V+PA I  +I  +++ +A  A+Q +GC G++R
Sbjct: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            D    P   +V   EIN  PG T +S++P++   +G  + +L+  ++E
Sbjct: 301 VDVFLTP-ENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIE 348


>gi|282899830|ref|ZP_06307792.1| D-alanine--D-alanine ligase [Cylindrospermopsis raciborskii CS-505]
 gi|281195312|gb|EFA70247.1| D-alanine--D-alanine ligase [Cylindrospermopsis raciborskii CS-505]
          Length = 357

 Score =  136 bits (342), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 99/342 (28%), Positives = 167/342 (48%), Gaps = 52/342 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASAL------------------------EDAGFKV--- 33
           + +L GG S E EVS+ S  A A AL                        E+   KV   
Sbjct: 6   VGLLFGGRSGEHEVSIVSAGAIAKALTTGENSQKYEVCPFYIQKNGVWQGEEIARKVLES 65

Query: 34  --SQIDVDRSVGLVLAHLKP---DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
             ++ +   +V L     K    DL F +LHG  GEDG +Q +L L+++P+  SG+L SA
Sbjct: 66  GSAEENTPNTVNLWQFPQKSPQIDLWFPILHGPNGEDGTIQGLLTLMQVPFVGSGVLGSA 125

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP------------PYVIKPLKGG 136
           + MDK+  K   +  G+P      V R  + S   + P            P  +KP   G
Sbjct: 126 MGMDKIAMKTAFAQAGLPQVQYQTVTRAQIWSNPCVFPKLCDQIETTLGYPCFVKPANLG 185

Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD----ASLDVTEI 192
           SS+GI  ++  Q +   L  +++++   ++++E  V   E+ C V+G+    AS+ V EI
Sbjct: 186 SSVGIAKVRSRQELETALDNAATYDR--RIIVEAGVVAREVECAVLGNDHPQASV-VGEI 242

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
           +   SDFY YE KY+   +  ++PA +   + +++Q ++  A  A+   G++R DF +  
Sbjct: 243 SF-NSDFYDYETKYTQGKADLLIPAPLSQTVVEQIQEMSLKAFAAVDAAGLARVDFFYVE 301

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            + ++   EIN  PG T  S++P++ A  G SF +L+  +++
Sbjct: 302 STGEILINEINTLPGFTSTSMYPQLWANTGISFPQLVDQLIQ 343


>gi|189347029|ref|YP_001943558.1| D-alanyl-alanine synthetase A [Chlorobium limicola DSM 245]
 gi|229463739|sp|B3EDF4|DDL_CHLL2 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|189341176|gb|ACD90579.1| D-alanine/D-alanine ligase [Chlorobium limicola DSM 245]
          Length = 363

 Score =  136 bits (342), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 84/254 (33%), Positives = 134/254 (52%), Gaps = 23/254 (9%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+ F  LHG++GEDG VQ +L+ + IPYT  G+ ASA++MDK  +K   +  GV   PSI
Sbjct: 101 DVVFIALHGSYGEDGRVQGLLDTMGIPYTGCGVSASAIAMDKALTKLCAADAGVATAPSI 160

Query: 112 LVNRFTMDSQ-HLISP-------------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
                T+D+  +L  P             P  +KP   GSS+GI  +    ++P  L  +
Sbjct: 161 -----TLDADSYLADPEPVHELVDSTFGYPLFVKPASLGSSVGISKVHLPAALPEALKVA 215

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDAS--LDVTEIAVPKSDFYSYELKYSSLNSTHVL 215
            S++   ++L+E  V G E+   V+G+      V     P SDFY ++ KY    +   +
Sbjct: 216 CSYDR--KILVEAAVSGKEIEVAVLGNDRPVASVPGEVEPGSDFYDFQDKYIHNTAKTFI 273

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275
           PA++P  +   V+  A   ++A+GCRG+SR DF  +  +  +   EIN  PG T +S++P
Sbjct: 274 PARLPDKLLDSVRCSAITVYKALGCRGMSRVDFFVNEENGSIVLNEINTIPGFTDISMYP 333

Query: 276 EMAAYAGYSFRELL 289
           ++   +G  F  L+
Sbjct: 334 KLFEASGIPFTALI 347


>gi|188492212|ref|ZP_02999482.1| D-alanine--D-alanine ligase [Escherichia coli 53638]
 gi|188487411|gb|EDU62514.1| D-alanine--D-alanine ligase [Escherichia coli 53638]
          Length = 364

 Score =  136 bits (342), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 95/349 (27%), Positives = 171/349 (48%), Gaps = 61/349 (17%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR--------SVGLVL-----A 47
           + ++ GG S+E EVSL S K    A++ + F V  + +D+        +   +L     A
Sbjct: 6   VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPA 65

Query: 48  H--LKP----------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
           H  L+P                            D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  HIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS---------PPY 128
           P+  S +LASA  MDK  +K+++   G+ + P    N  T  ++H IS          P 
Sbjct: 126 PFVGSDVLASAACMDKDVTKRLLRDAGLNIAP---FNTLTRANRHNISFAEVESKLGLPL 182

Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD 188
            +KP   GSS+G+  +  ++   + +  +  ++H  ++++EQ + G E+ C V+G+ +  
Sbjct: 183 FVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDH--KVIVEQGIKGREIECAVLGNDNPQ 240

Query: 189 VTEIA--VPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
            +     V  SDFY+Y+ KY   +    V+PA I  +I  +++ +A  A+Q +GC G++R
Sbjct: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            D    P   +V   EIN  PG T +S++P++   +G  + +L+  ++E
Sbjct: 301 VDVFLTP-ENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIE 348


>gi|293397144|ref|ZP_06641418.1| D-alanine--D-alanine ligase [Serratia odorifera DSM 4582]
 gi|291420615|gb|EFE93870.1| D-alanine--D-alanine ligase [Serratia odorifera DSM 4582]
          Length = 368

 Score =  136 bits (342), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 99/349 (28%), Positives = 171/349 (48%), Gaps = 61/349 (17%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------------------- 40
           + V+ GG S+E EVSL S K    A++   F+V+ + +D+                    
Sbjct: 6   VGVIFGGKSAEHEVSLQSAKNIVDAIDKEKFEVTLLGIDKQGQWHINDASNYLLHAENPA 65

Query: 41  ---------SVGLV----------------LAHLKPDLAFNVLHGNFGEDGLVQAILELL 75
                    +V LV                L  L  D+ F ++HG  GEDG +Q +L + 
Sbjct: 66  LIALNHSNNNVALVPGQQSRQLIAADGAGALGQL--DVVFPIVHGTLGEDGSLQGLLRMA 123

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFTMDSQHL---ISPPYV 129
            +P+  +G+L SA+SMDK  +K+++   G+ V P + +   NR   D   L   +  P  
Sbjct: 124 NLPFVGAGVLGSAVSMDKDVTKRLLRDAGLAVAPFVTLTRANRNKYDFAQLSERLGLPLF 183

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           +KP   GSS+G+  ++  Q     +  + S++H  ++L+E  + G E+ C V+G+     
Sbjct: 184 VKPANQGSSVGVSRVQDRQQYEAAVALAFSFDH--KVLVESAIVGREIECAVLGNDQPQA 241

Query: 190 T---EIAVPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
           +   EI V   +FYSY+ KY +      V+PA I      +++++A  A +A+ C G++R
Sbjct: 242 SVCGEI-VLNDEFYSYDTKYINEQGAQVVVPAAISEAASDKIRQVALKAFRALDCLGMAR 300

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            D +F      V   EIN  PG T +S++P++ A +G  +R+L+  ++E
Sbjct: 301 VD-VFLTADDNVIINEINTLPGFTNISMYPKLWAASGVDYRQLITRLIE 348


>gi|229820087|ref|YP_002881613.1| D-alanine/D-alanine ligase [Beutenbergia cavernae DSM 12333]
 gi|229566000|gb|ACQ79851.1| D-alanine/D-alanine ligase [Beutenbergia cavernae DSM 12333]
          Length = 372

 Score =  136 bits (342), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 90/258 (34%), Positives = 133/258 (51%), Gaps = 26/258 (10%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+   +LHG FGEDG +Q +LEL  +PY  SG+LASA  MDK   K V++  G+PV P  
Sbjct: 106 DVVLPLLHGPFGEDGTIQGMLELAGVPYVGSGVLASAAGMDKHYMKVVLAGAGLPVGPYT 165

Query: 112 LVNRFT--------MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS---SW 160
           ++            +D    +  P  +KP + GSS+GI  ++      LD L  +   + 
Sbjct: 166 VLTPSAWRRDRAACLDQVASLGLPVFVKPARAGSSIGITRVES-----LDRLVEAIEEAQ 220

Query: 161 NHGDQLLIEQYVDGIELTCGVM---GDASLDVT---EIAVPKSD--FYSYELKY-SSLNS 211
            H  ++++E  + G E+   V+   GD     T   EI V  ++  FY YE KY  S   
Sbjct: 221 RHDPKVIVEAAITGREIEVAVLEGRGDEPPRTTMPGEIVVTNAEHGFYDYEAKYFDSAGV 280

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271
               PA +P  +  E +RLA  A  A+GC G++R DF + P S  +   EIN  PG TP 
Sbjct: 281 DLRCPADLPPGVADEARRLAAEAFDALGCEGLARVDFFYTP-SGTLVVNEINTMPGFTPF 339

Query: 272 SIFPEMAAYAGYSFRELL 289
           S+FP +   +G ++ EL+
Sbjct: 340 SMFPLLWERSGVAYPELI 357


>gi|325263136|ref|ZP_08129871.1| D-alanine--D-alanine ligase [Clostridium sp. D5]
 gi|324031529|gb|EGB92809.1| D-alanine--D-alanine ligase [Clostridium sp. D5]
          Length = 351

 Score =  136 bits (342), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 101/344 (29%), Positives = 159/344 (46%), Gaps = 57/344 (16%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL------------- 49
           VL GG+S+ER+VSLSS       L + G     +DV        AHL             
Sbjct: 5   VLAGGLSTERDVSLSSSAGICRTLLEKGHDAFLLDVFLGFPYNPAHLDEVFTLPGHGLEI 64

Query: 50  -----------------KPD------------------LAFNVLHGNFGEDGLVQAILEL 74
                            +PD                  + F  LHG  GE+G +QA  +L
Sbjct: 65  AKNISTTEPDIEAVKASRPDQSDCFLGPNVIELCRMADITFLGLHGGEGENGKLQATFDL 124

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---ISPPYVIK 131
           L I YT    L  A++MDK  +KQ+    G+     + +++   +       +  P V+K
Sbjct: 125 LGIKYTGPDSLGCAVAMDKGFTKQIFLQTGIDTPAGVSLHKKAAEKSLEALGLKLPVVVK 184

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P  GGSS+G+ ++  +      L  SSS+ + D+++IE+Y+ G E  CG++   +L   E
Sbjct: 185 PCSGGSSIGVYIVTTESEYEEAL--SSSFRYEDEVVIEEYIKGREFACGIIDGEALPPIE 242

Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
           I +PK+ F+ Y  KY +  +  V PA I  D    +  L   A++A+     SR+DFL D
Sbjct: 243 I-IPKTGFFDYANKYQAGATEEVCPADIDEDTADRMMELTVKAYRALKLNVYSRADFLLD 301

Query: 252 PLSR-KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             SR  ++ LE+N  PGMT  S+ P+ A  +G  + +L   +++
Sbjct: 302 --SRGNLYCLEVNTLPGMTAASLLPKEAKASGIEYGDLCELIIQ 343


>gi|227832984|ref|YP_002834691.1| D-alanine-D-alanine ligase [Corynebacterium aurimucosum ATCC
           700975]
 gi|262182528|ref|ZP_06041949.1| D-alanine-D-alanine ligase [Corynebacterium aurimucosum ATCC
           700975]
 gi|254767727|sp|C3PFZ9|DDL_CORA7 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|227454000|gb|ACP32753.1| D-alanine-D-alanine ligase [Corynebacterium aurimucosum ATCC
           700975]
          Length = 356

 Score =  136 bits (342), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 85/259 (32%), Positives = 143/259 (55%), Gaps = 21/259 (8%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-S 110
           D+   VLHG +GEDG VQ + EL  IPY  +G+LASA+ MDK  +K+++ + G+PV P  
Sbjct: 101 DVIVPVLHGPYGEDGTVQGLFELSGIPYVGAGVLASAVGMDKEFTKKLLVAEGLPVAPQE 160

Query: 111 ILVNRFTMD--SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168
           +L    T+D   +  +  P  +KP +GGSS+G+  +   + +   L  + ++   D++LI
Sbjct: 161 VLTGEATLDDLQKERLGLPVFVKPARGGSSIGVSKVSAWEDLEAAL--TLAYESDDKVLI 218

Query: 169 EQYVDGIELTCGVMG--DASLDVTEIAVP---------KSDFYSYELKYSSLNSTHVLPA 217
           E  + G E+  GV+   D SL   + +VP         +  FY ++ KY     +  +PA
Sbjct: 219 EPEISGAEVEVGVLERPDGSL---QASVPAKILGTTESEEGFYDFDAKYIDEGVSAAIPA 275

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
            +  ++  E+++ A  A +A+G  G+SR DF     S  +   E+N  PG TP+S++P++
Sbjct: 276 PLSEELTAELRQRAIEAFRALGASGLSRVDFFVSDYSYCIN--EVNTFPGFTPISMYPQV 333

Query: 278 AAYAGYSFRELLLWMVEDA 296
            A  G  + ELL  +++ A
Sbjct: 334 FAAVGVGYAELLDTLIQTA 352


>gi|153808959|ref|ZP_01961627.1| hypothetical protein BACCAC_03260 [Bacteroides caccae ATCC 43185]
 gi|149128292|gb|EDM19511.1| hypothetical protein BACCAC_03260 [Bacteroides caccae ATCC 43185]
          Length = 324

 Score =  136 bits (342), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 90/323 (27%), Positives = 161/323 (49%), Gaps = 33/323 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKV-----------------SQIDVDRSVG 43
           +A++ GG +SE  VSL S +   S ++   + +                 +++ VDR+  
Sbjct: 5   IAIVAGGDTSEIVVSLRSAQGIYSFIDKEKYNLYIVEMEGRRWEVQLPDGNKVPVDRNDF 64

Query: 44  LVLAHLKP---DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
             +   +    D A+  +HG  GEDG +Q   +++ IPY+  G+LA+A++ DK    Q +
Sbjct: 65  SFMNGTEKVVFDFAYITIHGTPGEDGRLQGYFDMMRIPYSCCGVLAAAITYDKFACNQYL 124

Query: 101 SSCGVPVCPSILVNRFT----MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
            + GV +  S+L+ +       D    I  P  IKP  GGSS G+  +K  + I   +++
Sbjct: 125 KAFGVRIAESLLLRQGQSVSDEDVLEKIGLPCFIKPSLGGSSFGVTKVKTKEQIQPAIVK 184

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV----TEIAVPKSDFYSYELKYSSLNST 212
             ++   +++L+E +++G ELTCG        V    TE+ V  ++F+ Y+ KY+     
Sbjct: 185 --AFGEAEEVLVEAFMEGTELTCGCYKTKEKSVVFPPTEV-VTHNEFFDYDAKYNG-QVD 240

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
            + PA+I  ++   VQ L    +  +GC GI R D++      K+  LE+N  PGMT  S
Sbjct: 241 EITPARISDELTDRVQMLTSAIYDILGCSGIIRVDYIVTA-GEKINLLEVNTTPGMTATS 299

Query: 273 IFPEMAAYAGYSFRELLLWMVED 295
             P+    AG   ++++  ++E+
Sbjct: 300 FIPQQVRAAGLEIKDVMTDIIEN 322


>gi|302524733|ref|ZP_07277075.1| VanA protein [Streptomyces sp. AA4]
 gi|302433628|gb|EFL05444.1| VanA protein [Streptomyces sp. AA4]
          Length = 345

 Score =  136 bits (342), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 110/337 (32%), Positives = 168/337 (49%), Gaps = 50/337 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALE-------------DAGFKV-------------- 33
           + V+ GGIS E  VS+ S +  A  LE             D  +K+              
Sbjct: 6   IGVIFGGISEEHPVSVKSAREVAKNLEPETYEPYWVGITKDGSWKLCDGPGEGWEDHGRP 65

Query: 34  SQIDVDRSV-GLVLAH------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           + +  DR V GL++        ++ D+   VLHG  GEDG +Q +LEL  IPY    + +
Sbjct: 66  AMLSPDRGVHGLLVEEQGKYEPVRLDVVLPVLHGKLGEDGAMQGLLELSGIPYAGCDVRS 125

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
           SAL MDK  +  V  S G+   P+        T+D+     P +V KP + GSS G+  +
Sbjct: 126 SALCMDKSLAYLVTDSAGI-ATPNFWAGSANETVDAGKFTYPVFV-KPARSGSSFGVTKV 183

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD-ASLDVTE---IAVPKSDFY 200
            +++ +P  L  ++ ++   ++LIE+ V+G E+ C V+G+ A L V E   I +    F 
Sbjct: 184 SREEDLPSALADAAQFD--SKVLIEEAVEGSEVGCAVLGNGADLIVGEPDQIRLSHGFFK 241

Query: 201 SYEL---KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD-FLFDPLSRK 256
            ++    +  S NST ++PA IP +    VQ  A   ++A+GCRG++R D FL +     
Sbjct: 242 IHQEDNPESGSENSTILVPAAIPAEARARVQATARTIYRALGCRGLARVDLFLLE--DGT 299

Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           V   E+N  PG+T  S +P M A AG SF E+L  MV
Sbjct: 300 VMLNEVNTFPGLTSYSRYPRMMAAAGLSFAEMLDRMV 336


>gi|265765163|ref|ZP_06093438.1| D-alanyl-alanine synthetase A [Bacteroides sp. 2_1_16]
 gi|263254547|gb|EEZ25981.1| D-alanyl-alanine synthetase A [Bacteroides sp. 2_1_16]
          Length = 324

 Score =  136 bits (342), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 91/323 (28%), Positives = 160/323 (49%), Gaps = 33/323 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKV-----------------SQIDVDRSVG 43
           +A++ GG +SE  VSL S +   S ++   + +                 S+  VDR+  
Sbjct: 5   IAIVAGGDTSEIVVSLRSAQGIYSFIDKEKYNLYIVEMEGRRWEVQLPDGSKTPVDRNNF 64

Query: 44  LVLAHLKP---DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
             +   +    D A+  +HG  GEDG +Q   +++ IPY+  G+LA+A++ DK    Q +
Sbjct: 65  SFMNGAEKVVFDFAYITIHGTPGEDGRLQGYFDMMRIPYSCCGVLAAAITYDKFVCNQYL 124

Query: 101 SSCGVPVCPSILVNRFTM----DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
            + GV +  S+L+ +       D    I  P  IKP  GGSS G+  +K  + I   +  
Sbjct: 125 KAFGVRISESLLLRQGQAVSDEDVVEKIGLPCFIKPNLGGSSFGVTKVKTREQIQPAI-- 182

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV----TEIAVPKSDFYSYELKYSSLNST 212
           + +++  ++++IE ++ G ELTCG        V    TE+ V  ++F+ Y+ KY+     
Sbjct: 183 AKAFSEAEEVMIEAFMGGTELTCGCYKTKEKSVVFPLTEV-VTHNEFFDYDAKYNG-QVD 240

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
            + PA+I  ++ + VQ L    +  +GC GI R D++      K+  LE+N  PGMT  S
Sbjct: 241 EITPARISEELTRRVQTLTSAIYDILGCSGIIRVDYIITE-GEKINLLEVNTTPGMTATS 299

Query: 273 IFPEMAAYAGYSFRELLLWMVED 295
             P+    AG   ++++  ++E+
Sbjct: 300 FIPQQVRAAGLDIKDVMTDIIEN 322


>gi|323976140|gb|EGB71233.1| D-alanine-D-alanine ligase [Escherichia coli TW10509]
          Length = 364

 Score =  136 bits (342), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 92/346 (26%), Positives = 170/346 (49%), Gaps = 55/346 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR--------SVGLVL-----A 47
           + ++ GG S+E EVSL S K    A++ + F V  + +D+        +   +L     A
Sbjct: 6   VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDANNYLLNADDPA 65

Query: 48  H--LKP----------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
           H  L+P                            D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  HIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVIK 131
           P+  S +LASA  MDK  +K+++   G+ + P I + R    +      +  +  P  +K
Sbjct: 126 PFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRTNRQNISFAEVKSKLGLPLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  +  ++   + +  +  ++H  ++++EQ + G E+ C V+G+ +   + 
Sbjct: 186 PANQGSSVGVSKVTSEEEYAIAVDLAFEFDH--KVIVEQGIKGREIECAVLGNDNPQAST 243

Query: 192 IA--VPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               V  SDFY+Y+ KY   +    V+PA I  +I  +++ +A  A+Q +GC G++R D 
Sbjct: 244 CGEIVLTSDFYAYDTKYIDEDGAKVVVPAAITPEINDKIRAIAVQAYQTLGCAGMARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
              P   +V   EIN  PG T +S++P++   +G  + +L+  ++E
Sbjct: 304 FLTP-ENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIE 348


>gi|262340912|ref|YP_003283767.1| D-Alanine-D-alanine ligase [Blattabacterium sp. (Blattella
           germanica) str. Bge]
 gi|262272249|gb|ACY40157.1| D-Alanine-D-alanine ligase [Blattabacterium sp. (Blattella
           germanica) str. Bge]
          Length = 327

 Score =  136 bits (342), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 99/331 (29%), Positives = 166/331 (50%), Gaps = 42/331 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKA-----CASALE--------------DAGFKVSQID-VDR 40
           +AV+MGG + E  +SL SGK      C    E              D   K   +D  D 
Sbjct: 4   IAVIMGGYTKESAISLQSGKVVYENLCREEFEPYKVYIFEEKWFMKDEQNKEYTVDKYDF 63

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           SV +    ++ D  FN +HG  GEDGL+QA  ELL IPYT      + ++ +K     ++
Sbjct: 64  SVDIGSKRIQFDCVFNAIHGTPGEDGLLQAYFELLRIPYTGCNFHHANMTFNKKYCLTLL 123

Query: 101 SSCGVPVCPSILVNRFTMDSQHLISP----PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
              G+    SI +N+  +  +  I      P  +KP + GSSLGI  + ++     DL  
Sbjct: 124 RHFGINTAVSIFLNKNQIFCKEKILKKVGLPCFVKPNRSGSSLGISKVYEET----DLFN 179

Query: 157 S--SSWNHGDQLLIEQYVDGIELTCGVMGDAS----LDVTEIAVPKSDFYSYELKYSSLN 210
           +   ++   ++++IE +++G E++ GV    +    L +TEI + ++DF+ +E KYS   
Sbjct: 180 AVKKAFKEDEEIIIESFLEGREVSVGVFSFKNKIFVLPITEI-ISQNDFFDFESKYSG-K 237

Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270
           S  + PAK+   I  ++Q +A   +  +   GISRS+++   ++ + ++LEIN  PG++ 
Sbjct: 238 SQEITPAKLLPSIQNKIQEIAKKVYNYLNLSGISRSEYII--VNGEPYFLEINTVPGLSE 295

Query: 271 VSIFPEMAAYAG----YSFRELLLWMVEDAS 297
            SIFP+    AG    Y F+  + + +E A 
Sbjct: 296 ESIFPKQLKTAGISLSYFFKNCINYSIEKAK 326


>gi|291544035|emb|CBL17144.1| D-alanine--D-alanine ligase [Ruminococcus sp. 18P13]
          Length = 357

 Score =  136 bits (342), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 106/352 (30%), Positives = 167/352 (47%), Gaps = 64/352 (18%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------------------D 39
           +AV+ GG+SSE +VSL S       +    ++V  I +                     +
Sbjct: 6   VAVVFGGVSSEHDVSLVSATNVIENIPQDKYEVMCIGITKKGRWLYYPGDTAAIASGEWE 65

Query: 40  RSVGLVLAHLKPD--------------------LAFNVLHGNFGEDGLVQAILELLEIPY 79
           R    + A L PD                    + F VLHG  GEDG +Q +++L  IPY
Sbjct: 66  RDPDCISAVLSPDPLHGGFLLIENGEATVRKVDVVFPVLHGKNGEDGTIQGLMDLARIPY 125

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILV-----NRFTMDSQHL---ISPPYVIK 131
              G+LASA  MDK+ +  V+    +      ++     NR       +   +  P  +K
Sbjct: 126 VGCGLLASASCMDKVHTHTVLDYNKIRTARWRMIGQRDLNRLDACCAQIGEELGYPLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSS---SWNHGDQLLIEQYVDGIELTCGVMGD---- 184
           P   GSS+GI     +++   + L+ +   +++H ++++IE+++ G EL   V G     
Sbjct: 186 PANCGSSIGI-----NKATDAETLKDAVKIAFSHDNKVVIEEFIQGKELEVAVFGYDNPF 240

Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244
           AS  V EI  P +DFY YE KY    S   +PA+I  D  KE++  A  A++A+GC+G+S
Sbjct: 241 ASF-VGEIE-PCNDFYDYEAKYILGTSKLYIPARIDADSEKEIRETAVAAYKALGCKGLS 298

Query: 245 RSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           R DF F      V   EIN  PG TP+S++P++    G S+  L+  ++E A
Sbjct: 299 RVDF-FLKQDGTVILNEINTMPGFTPISMYPKLMENLGMSYSYLIDKLLEQA 349


>gi|307243887|ref|ZP_07526012.1| D-ala D-ala ligase N-terminal domain protein [Peptostreptococcus
           stomatis DSM 17678]
 gi|306492709|gb|EFM64737.1| D-ala D-ala ligase N-terminal domain protein [Peptostreptococcus
           stomatis DSM 17678]
          Length = 298

 Score =  136 bits (342), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 91/297 (30%), Positives = 145/297 (48%), Gaps = 7/297 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AV+ GGISSERE+SL SGKA    L+   ++V    +D    +       D+A   LHG
Sbjct: 3   VAVIYGGISSEREISLRSGKAIIDNLDRNKYEVIGCQIDEMTDVFKIDNDIDIALIGLHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG+VQ+ILE   I Y     L S + MDK  +K +     +       V       
Sbjct: 63  KFGEDGVVQSILEAKGIKYCGCNPLTSGILMDKNYTKTIARQNNLLTADWTSVKSVEEID 122

Query: 121 QHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
             LI     P  IKP  GGSS+    IK  + +   + +   ++  + +LIE+YV G+E 
Sbjct: 123 YGLIDRMGYPVFIKPNSGGSSVATFFIKDKKDVENAVREGLKYD--EIVLIEKYVKGVEY 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           T  ++         I    ++F+ +E KYS+ N       ++  ++ K+++  +    + 
Sbjct: 181 TSFILNGQVFPTIRIT-SDNEFFDFEAKYSTTNGAREEVVELSPELDKKLKEASNTCWKV 239

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             C+G  R D++     + V+ LE+N  PGMT  S+ P+ A   G S++ LL  ++E
Sbjct: 240 FNCKGYVRVDYIITE-DQDVYLLELNTLPGMTETSLIPKSAKAMGISYKGLLDKLIE 295


>gi|167630619|ref|YP_001681118.1| d-alanine--d-alanine ligase, putative [Heliobacterium modesticaldum
           Ice1]
 gi|190359140|sp|B0TAZ6|DDL_HELMI RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|167593359|gb|ABZ85107.1| d-alanine--d-alanine ligase, putative [Heliobacterium modesticaldum
           Ice1]
          Length = 366

 Score =  136 bits (342), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 105/343 (30%), Positives = 161/343 (46%), Gaps = 51/343 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS------------------- 41
           +AV+ GG S E EVSL+S ++   AL+   F V  I +DR                    
Sbjct: 6   IAVICGGRSGEHEVSLTSAQSIVDALDRFRFNVLTIGIDRHGAWWLGSNVIDNLRKGQQP 65

Query: 42  -------------VGLVLAH---LKP---DLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
                         GL+  +    KP   D+ F VLHG  GEDG +Q + E   +PY   
Sbjct: 66  YGQRVYFIPDPTCPGLIEENPVTRKPVPVDVFFPVLHGPNGEDGTIQGLFEAANVPYVGC 125

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTMDSQHLISP-------PYVIKPL 133
           G+LASA  MDK   K + +   +P  P ++V  NR+    + +I         P  +KP 
Sbjct: 126 GVLASACGMDKAIMKALFAQSDLPQLPYLVVLRNRWESAREQVIDEVEDRLGYPCFVKPA 185

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--DVTE 191
             GSS+GI   K      L      +  +  +L++E+ ++  E+   V+G+  +   V  
Sbjct: 186 NMGSSVGIS--KATNRAELVAAFDDAVRYDRKLIVEKGINVREIEVSVLGNDEVVASVPG 243

Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
             VP  +FY Y+ KY++ +S  ++PA I        Q +A  A +AI   G+SR DFL D
Sbjct: 244 EIVPAHEFYDYDAKYAAADSRLLIPAPIAAADVATFQEMAIRAFRAIDGSGLSRVDFLLD 303

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             S +V+  EIN  PG T +S++P++    G  + ELL  +V+
Sbjct: 304 KNSGEVYINEINTLPGFTSISMYPKLWEATGIPYGELLSRLVD 346


>gi|331651307|ref|ZP_08352332.1| D-alanine--D-alanine ligase A (D-alanylalanine synthetaseA)
           (D-Ala-D-Ala ligase A) [Escherichia coli M718]
 gi|331051048|gb|EGI23100.1| D-alanine--D-alanine ligase A (D-alanylalanine synthetaseA)
           (D-Ala-D-Ala ligase A) [Escherichia coli M718]
          Length = 364

 Score =  136 bits (342), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 92/346 (26%), Positives = 170/346 (49%), Gaps = 55/346 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR--------SVGLVL-----A 47
           + ++ GG S+E EVSL S K    A++ + F V  + +D+        +   +L     A
Sbjct: 6   VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPA 65

Query: 48  H--LKP----------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
           H  L+P                            D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  HIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVIK 131
           P+  S +LASA  MDK  +K+++   G+ + P I + R    +      +  +  P  +K
Sbjct: 126 PFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  +  ++   + +  +  ++H  ++++EQ + G E+ C V+G+ +   + 
Sbjct: 186 PANQGSSVGVSKVTSEEQYAIAVDLAFEFDH--KVIVEQGIKGREIECAVLGNDNPQAST 243

Query: 192 IA--VPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               V  SDFY+Y+ KY   +    V+PA I  +I  +++ +A  A+Q +GC G++R D 
Sbjct: 244 CGEIVLNSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
              P   +V   EIN  PG T +S++P++   +G  + +L+  ++E
Sbjct: 304 FLTP-ENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIE 348


>gi|302875906|ref|YP_003844539.1| D-alanine/D-alanine ligase [Clostridium cellulovorans 743B]
 gi|307689340|ref|ZP_07631786.1| D-alanyl-alanine synthetase A [Clostridium cellulovorans 743B]
 gi|302578763|gb|ADL52775.1| D-alanine/D-alanine ligase [Clostridium cellulovorans 743B]
          Length = 341

 Score =  136 bits (342), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 89/340 (26%), Positives = 170/340 (50%), Gaps = 46/340 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44
           +AV+ GG SSE ++SL+S     + ++   + V  I + +  GL                
Sbjct: 5   IAVIFGGQSSEYDISLASAAYVLNNIDKTKYGVYPIGISKE-GLWYEYTGSIDKIEDGSW 63

Query: 45  -------------VLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSM 91
                        VL + + D+ F +LHG  GEDG +Q + +LL +P   + +L+SAL M
Sbjct: 64  INDEYYKIPDGERVLFNKEVDVVFPLLHGFCGEDGTIQGLCKLLRLPCVGASVLSSALCM 123

Query: 92  DKMRSKQVVSSCGVPVCP-SILVNRFTMDSQ--------HLISPPYVIKPLKGGSSLGII 142
           DK  SK ++    + V P  ++  R  ++++          +     +KP  GGSS+G+ 
Sbjct: 124 DKAYSKYILEDFNINVTPYEVIEEREYLNNKSSYKEKVIKKLGEEVFVKPSNGGSSVGVS 183

Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA---SLDVTEIAVPKSD- 198
            +K + S  + +    ++ +  ++L+E+ +   E+   ++ D       + E+    S+ 
Sbjct: 184 KLKAEDSFEVAI--EKAFKYDKRVLVEKAIAAREIKVAIIEDGIELKTKIGEVVYKNSNK 241

Query: 199 -FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
            FY YE+KY+   +  ++PAK+  ++  +++ LA  A++ + CRG++R DF  D  + ++
Sbjct: 242 EFYDYEVKYTEGMNELIVPAKLETEVMDKIEALALKAYKVLDCRGMARVDFFIDRYTSEI 301

Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           +  EIN  PG T  S FP++   AG +  EL+  ++++A 
Sbjct: 302 YLNEINTIPGFTRFSSFPKLWEVAGVTPTELINILIKNAE 341


>gi|120437021|ref|YP_862707.1| D-alanyl-alanine synthetase A [Gramella forsetii KT0803]
 gi|190359136|sp|A0M4U5|DDL_GRAFK RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|117579171|emb|CAL67640.1| D-alanine--D-alanine ligase [Gramella forsetii KT0803]
          Length = 326

 Score =  136 bits (342), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 92/324 (28%), Positives = 166/324 (51%), Gaps = 34/324 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           +A+ MGG SSE  +S++SG      L+   ++  ++ + +    V+A             
Sbjct: 5   IAIAMGGYSSEYRISINSGNIVYKHLDHDLYEPYRVHILKGEWFVVADDDTPYPINKSNF 64

Query: 49  --------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
                   ++ D  FN +HG  GE+GL+QA LEL+ IP T      SAL+ +K     V+
Sbjct: 65  TVKINDKVIQFDCVFNTIHGTPGENGLLQAYLELIGIPQTSCDYYQSALTFNKRDLISVL 124

Query: 101 SSCGVPVCPSILVNR-FTMDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
              G+    +  +N+   ++++ ++     P  +K  + GSS G+  +K +  I      
Sbjct: 125 RPYGIKAATNYFLNKDQEINTKEIVDKVGLPCFVKANRAGSSFGVTKVKTEDEII--SAA 182

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNST 212
            +++   D+ +IE ++DG E++ GV+       +L VTEI +P  +F+ YE KY    S 
Sbjct: 183 KTAFTEDDEAIIESFLDGTEVSVGVITYKGKVLALPVTEI-IPDGEFFDYEAKYLG-KSQ 240

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
            + PA+I  +  K+VQ +A + ++ +  +G+SRS+F+F     +  ++E+N  PG++  S
Sbjct: 241 EITPARISEEDTKKVQDIAIMIYKKLKMKGLSRSEFIFH--EGEPHFIEMNTNPGISQAS 298

Query: 273 IFPEMAAYAGYSFRELLLWMVEDA 296
           I P+ A  AG S ++L    +E A
Sbjct: 299 ILPQQAEKAGISLKDLFGSTIEAA 322


>gi|238061902|ref|ZP_04606611.1| D-alanine-D-alanine ligase [Micromonospora sp. ATCC 39149]
 gi|237883713|gb|EEP72541.1| D-alanine-D-alanine ligase [Micromonospora sp. ATCC 39149]
          Length = 322

 Score =  136 bits (342), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 103/315 (32%), Positives = 161/315 (51%), Gaps = 24/315 (7%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62
           VL GG+S ER+VSL SG+    AL   G +    D D ++   L    PD     LHG  
Sbjct: 14  VLAGGLSYERDVSLRSGRRVLDALRAVGVEAELRDADVALLPALVADPPDAVVIALHGAT 73

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFT--- 117
           GEDG ++ +L+L ++PY      AS ++ DK  +K V+   G+P    + +  +RF+   
Sbjct: 74  GEDGSLRGVLDLCDVPYVGCDARASRVAWDKPSAKAVLREAGIPTPDWVALPHDRFSELG 133

Query: 118 --------MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
                   +D   L   P ++KP +GGS LG  V++   S+P  ++   +++     L+E
Sbjct: 134 AVAVLDRIVDRLGL---PLMVKPAQGGSGLGAAVVRDAASLPAAMVGCFAYDS--TALVE 188

Query: 170 QYVDGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
           +YV G+++   V+    G  +L   EI VP++  Y Y  +Y++  +T   PA++  ++  
Sbjct: 189 RYVPGMDVAVSVVDLGEGAQALPAVEI-VPRNGVYDYAARYTAGRTTWHAPARLDPEVAD 247

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285
            V R+A  AH A+G R ISR D + D    +   LE+NV PGMT  S+ P     AG  F
Sbjct: 248 AVARVAVAAHTALGLRDISRVDLIVD-ADGQPHVLEVNVSPGMTETSLLPLAVQAAGLDF 306

Query: 286 RELLLWMVEDASCLR 300
             LL  +V  A+  R
Sbjct: 307 GRLLGSLVSRAAARR 321


>gi|56418758|ref|YP_146076.1| D-alanyl-alanine synthetase A [Geobacillus kaustophilus HTA426]
 gi|81348304|sp|Q5L3H2|DDL_GEOKA RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|56378600|dbj|BAD74508.1| D-alanine-D-alanine ligase [Geobacillus kaustophilus HTA426]
          Length = 367

 Score =  135 bits (341), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 79/249 (31%), Positives = 133/249 (53%), Gaps = 14/249 (5%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+ F +LHG  GEDG VQ +LE+L IPY  +G+LASA+ MDK+  K + +  G+     I
Sbjct: 96  DVIFPLLHGPNGEDGTVQGLLEILNIPYVGNGVLASAVGMDKVMMKNLFAQAGLRQAKYI 155

Query: 112 LVNRFTMDS---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
            V ++             +  +  P  +KP   GSS+GI   K+   +    +++  ++ 
Sbjct: 156 AVTKYDWQKRGETVYDRIERELGYPCFVKPANAGSSVGISKCKQRGDLKAAFIEAFQYDR 215

Query: 163 GDQLLIEQYVDGIELTCGVMGDAS--LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
             +++IE+ + G E+  GV+G+      V    VPK +FY YE KY    +  ++PA + 
Sbjct: 216 --KIIIEEAIVGREIEIGVIGNDEPICSVVGEIVPKKEFYDYEAKYEDGQTELIIPADVT 273

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280
            + Y+ ++++A  A Q +   G++R DF F      V+  E+N  PG TP S+FP +  +
Sbjct: 274 KEQYETIKQMAITAFQVLDLSGLARVDF-FLAEDGAVYINEVNTMPGFTPYSMFPLLWQH 332

Query: 281 AGYSFRELL 289
           +G  + EL+
Sbjct: 333 SGVPYPELI 341


>gi|188584653|ref|YP_001916198.1| D-alanine--D-alanine ligase [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|229485967|sp|B2A2Z6|DDL_NATTJ RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|179349340|gb|ACB83610.1| D-alanine--D-alanine ligase [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 365

 Score =  135 bits (341), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 100/341 (29%), Positives = 166/341 (48%), Gaps = 57/341 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS--------------VGL-- 44
           + VL GG S E EVSL S  +  +AL+   F+V  I + ++               G+  
Sbjct: 6   VGVLFGGRSGEHEVSLKSANSILNALDRELFEVIPIGIRKNGEWISGEAPLEELETGIKN 65

Query: 45  ---------------VLAHLKP-------DLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
                          VL  L P       DL F VLHG FGEDG VQ  L+L  IPY  S
Sbjct: 66  QGNYAVSILPDPSKKVLWKLDPFEKISEIDLIFPVLHGTFGEDGTVQGFLDLCGIPYVGS 125

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNR-----------FTMDSQHLISPPYVIK 131
           G+L S+L+MDK+  K+++   G+ V       R           F+++ Q  +S P  +K
Sbjct: 126 GVLGSSLAMDKVMMKKILRRHGLQVANYYSFKRSEWEQDRDEIIFSIEKQ--LSYPIFVK 183

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT- 190
           P   GSS+GI  +K  + +   +  +  ++   + L E+++ G E+   ++G+ +   + 
Sbjct: 184 PANLGSSVGISKVKNREELIQGIDLAVKYDM--KCLAEEFIPGKEIELSILGNDNPKTSV 241

Query: 191 --EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
             EI +P ++FY Y  KY +  S  V+PA +   +  +++ +   A + + C G+SR D+
Sbjct: 242 PGEI-IPANEFYDYNAKYINNKSKLVIPAPLSETLKTKIEDMGVEAFRVLDCYGLSRVDY 300

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
                  +V+  EIN  PG T +S++P++   +G S+ +LL
Sbjct: 301 FVLEDQEEVYINEINTMPGFTEISMYPKLWTESGLSYSQLL 341


>gi|261368270|ref|ZP_05981153.1| D-alanine--D-alanine ligase [Subdoligranulum variabile DSM 15176]
 gi|282569787|gb|EFB75322.1| D-alanine--D-alanine ligase [Subdoligranulum variabile DSM 15176]
          Length = 370

 Score =  135 bits (341), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 96/349 (27%), Positives = 163/349 (46%), Gaps = 62/349 (17%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDA----GFKVSQIDVDRSVGLVLAHLKP----- 51
           +A+  GG+SSE EVS  S  A   AL +A     ++V  + + ++   +  H  P     
Sbjct: 9   VALFFGGVSSEHEVSCVSASAWLRALNEAPCAGRYEVFPVGITKTGRWLACHPTPEAMAD 68

Query: 52  ------------------------------------DLAFNVLHGNFGEDGLVQAILELL 75
                                               D+   V+HG  GEDG +Q + E+ 
Sbjct: 69  GSWEQGADCVPCILSPDRGDHGVWLLRDGQAELVPIDICAPVMHGKNGEDGTIQGLFEMA 128

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD---------SQHLISP 126
            IPY   G+LASA+ MDK  +  V+ + GVP C      R  ++         ++  +  
Sbjct: 129 RIPYVGCGVLASAVCMDKALANTVMDAAGVPHCRWTSAIRAEVEQDRAAVLDRAEAALGY 188

Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD-- 184
           P  +KP   GSS+GI   K      LD     +    D++++E+++DG E+ C  +G+  
Sbjct: 189 PIFVKPANAGSSVGIS--KAADRAALDAALDVALREDDKVVLEEFIDGQEVECAAIGNPD 246

Query: 185 --ASLDVTEIA--VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
             A++  T     +  ++FY+Y+ KY +  S  V+PA +  +   EV+  A  A+ A+GC
Sbjct: 247 DPANITTTRPGEILAGAEFYTYDDKYKNGVSQTVIPAHLSEEKLDEVKAEARKAYLALGC 306

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
            G+SR DF  +  + +V   E+N  PG T +S++P++  + G +F +L+
Sbjct: 307 AGLSRCDFFVERGTGRVLCNELNTLPGFTAISMYPKLMEHEGVNFPQLV 355


>gi|60680013|ref|YP_210157.1| D-alanyl-alanine synthetase A [Bacteroides fragilis NCTC 9343]
 gi|81316915|sp|Q5LI31|DDL_BACFN RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|60491447|emb|CAH06197.1| putative D-Alanine-D-Alanine-Ligase [Bacteroides fragilis NCTC
           9343]
          Length = 324

 Score =  135 bits (341), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 91/323 (28%), Positives = 160/323 (49%), Gaps = 33/323 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKV-----------------SQIDVDRSVG 43
           +A++ GG +SE  VSL S +   S ++   + +                 S+  VDR+  
Sbjct: 5   IAIVAGGDTSEIVVSLRSAQGIYSFIDKEKYNLYIVEMEGRRWEVQLQDGSKTPVDRNDF 64

Query: 44  LVLAHLKP---DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
             +   +    D A+  +HG  GEDG +Q   +++ IPY+  G+LA+A++ DK    Q +
Sbjct: 65  SFMNGAEKVVFDFAYITIHGTPGEDGRLQGYFDMIRIPYSCCGVLAAAITYDKFVCNQYL 124

Query: 101 SSCGVPVCPSILVNRFTM----DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
            + GV +  S+L+ +       D    I  P  IKP  GGSS G+  +K  + I   +  
Sbjct: 125 KAFGVRISESLLLRQGQAVSDEDVVEKIGLPCFIKPNLGGSSFGVTKVKTREQIQPAI-- 182

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV----TEIAVPKSDFYSYELKYSSLNST 212
           + +++  ++++IE ++ G ELTCG        V    TE+ V  ++F+ Y+ KY+     
Sbjct: 183 AKAFSEAEEVMIEAFMGGTELTCGCYKTKEKSVVFPLTEV-VTHNEFFDYDAKYNG-QVD 240

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
            + PA+I  ++ + VQ L    +  +GC GI R D++      K+  LE+N  PGMT  S
Sbjct: 241 EITPARISEELTRRVQTLTSAIYDILGCSGIIRVDYIITE-GEKINLLEVNTTPGMTATS 299

Query: 273 IFPEMAAYAGYSFRELLLWMVED 295
             P+    AG   ++++  ++E+
Sbjct: 300 FIPQQVRAAGLDIKDVMTDIIEN 322


>gi|329964665|ref|ZP_08301719.1| D-ala D-ala ligase protein [Bacteroides fluxus YIT 12057]
 gi|328525065|gb|EGF52117.1| D-ala D-ala ligase protein [Bacteroides fluxus YIT 12057]
          Length = 326

 Score =  135 bits (341), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 90/323 (27%), Positives = 160/323 (49%), Gaps = 33/323 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKV-----------------SQIDVDR--- 40
           +A++ GG +SE  VSL S +   S ++   + +                 ++  VDR   
Sbjct: 5   IAIVAGGDTSEFHVSLRSAQGIYSFIDKEKYTLYIVEMHGLDWHVQLPGGTKAPVDRNDF 64

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           S  L    +  D A+  +HG  GEDG +Q   ++L IPY+  G+LA++L+ DK    Q +
Sbjct: 65  SFRLDGEKIVFDFAYITIHGTPGEDGRLQGYFDMLHIPYSCCGVLAASLTYDKFACNQYL 124

Query: 101 SSCGVPVCPSILVNR----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
            + GV +  S+++ +       D    I  P  IKP  GGSS G+  +K ++ I   +  
Sbjct: 125 KAFGVRIAESLMLRQGQSVSNRDVLEKIGLPCFIKPSLGGSSFGVTKVKTEEQIQPAI-- 182

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDAS----LDVTEIAVPKSDFYSYELKYSSLNST 212
           + ++    ++++E ++DG E+TCG            +TE+ V  ++++ Y+ KY+   S 
Sbjct: 183 AKAFEEAQEVVVEAFMDGTEITCGCYKTKDKAVVFPITEV-VTHNEYFDYKAKYNG-ESD 240

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
            + PA+I  D+ + VQ L    +  +G  GI R D++      K+  LE+N  PGMT  S
Sbjct: 241 EITPARISDDLTRRVQALTSAIYDILGASGIIRVDYII-TAGDKINLLEVNTTPGMTATS 299

Query: 273 IFPEMAAYAGYSFRELLLWMVED 295
             P+    AG   ++++  ++E+
Sbjct: 300 FIPQQVRAAGLDIKDVMTDIIEN 322


>gi|293401063|ref|ZP_06645208.1| D-alanine--D-alanine ligase (D-alanylalanine
           synthetase)(D-Ala-D-Ala ligase) [Erysipelotrichaceae
           bacterium 5_2_54FAA]
 gi|291306089|gb|EFE47333.1| D-alanine--D-alanine ligase (D-alanylalanine
           synthetase)(D-Ala-D-Ala ligase) [Erysipelotrichaceae
           bacterium 5_2_54FAA]
          Length = 354

 Score =  135 bits (341), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 82/251 (32%), Positives = 127/251 (50%), Gaps = 17/251 (6%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D  F VLHG  GEDG +Q + EL  IPY     ++SA+ MDK  +  V+ + G+P  P +
Sbjct: 98  DCIFPVLHGKNGEDGTIQGLFELSGIPYVGCDHMSSAICMDKEMAHIVMENAGIPCAPYL 157

Query: 112 LVNRFT-MDSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
            V     +D +H+          P  IKP   GSS GI  I         +  +   +  
Sbjct: 158 CVYEDEHLDYRHIYEEAKAKLGLPIFIKPANAGSSFGIHKIASFDDFEESMKDAFYHDGR 217

Query: 164 DQLLIEQYVDGIELTCGVMGD-----ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            ++++E  ++G E+ C VMG+      S+D  E A P   F+ YE KY  ++S    PA+
Sbjct: 218 GKVILETTIEGFEIGCAVMGNKELFAGSVDEIETAAP---FFDYEGKYQMVDSHIYCPAR 274

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278
           I  ++++E + LA  A++A+ C+G++R D    P  + +   E+N  PG T  S +P M 
Sbjct: 275 ISKELFEEARSLALKAYRAMNCKGMTRVDMFVTP-QQSIVMNEVNTIPGFTDTSRYPTMM 333

Query: 279 AYAGYSFRELL 289
             AG  F +LL
Sbjct: 334 KEAGIEFGDLL 344


>gi|219684734|ref|ZP_03539677.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase) [Borrelia
           garinii PBr]
 gi|219672096|gb|EED29150.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase) [Borrelia
           garinii PBr]
          Length = 361

 Score =  135 bits (341), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 91/337 (27%), Positives = 168/337 (49%), Gaps = 50/337 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAG-FKVSQIDVDRSVGL--------------- 44
           + ++ GG+S E E+S  S  +   AL D   + +  + +D+  G+               
Sbjct: 5   LMLIFGGVSFEHEISCKSAYSIYLALLDLNKYNIYPVYIDKCTGIWYLLDSVSDPPKLID 64

Query: 45  --VL---------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87
             VL                +L+ D+ F V+HG  GEDG +Q +L++++IP   +GI+ S
Sbjct: 65  IDVLPIVSLLPGIGIFSNNKNLEIDVVFPVVHGRTGEDGAIQGVLKVMDIPCIGAGIIGS 124

Query: 88  ALSMDKMRSKQVVSSCGVPVCPSILVNR--FTMDSQHL-------ISPPYVIKPLKGGSS 138
           A+S +K   K ++ S  +P+ P I   +  + +D + +       +  P ++KP   GSS
Sbjct: 125 AISSNKYFCKLLLKSFNIPLVPFIGFRQHDYLLDKEEIKRNVREALGYPVIVKPAVLGSS 184

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV---TEIAVP 195
           +GI V   +  I  +     +  +   +LIE++++  E+ C V+G+  + +    EI V 
Sbjct: 185 IGINVAYSESQI--EFFIEEALKYDLTILIEKFIEAREIECSVIGNEKIKIFSPGEIVVQ 242

Query: 196 KSDFYSYELKYSSLNSTHV---LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
              FY Y+ KYS +    +   +PA++  +    ++  AFL ++ +  RG++R DF  + 
Sbjct: 243 DFIFYDYDAKYSVIPGNSIIFNIPAQLETNQLLSIKEYAFLVYKNLELRGMARVDFFVEK 302

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
            S K++  EIN  PG T +S+F +M ++ G  F++LL
Sbjct: 303 KSGKIYLNEINTIPGFTDISMFSKMCSHDGLQFKDLL 339


>gi|254967088|gb|ACT97586.1| D-alanyl-alanine synthetase A [mixed culture bacterium
           CY_gF1DD01_14]
 gi|281177552|dbj|BAI53882.1| D-alanine-D-alanine ligase [Escherichia coli SE15]
          Length = 364

 Score =  135 bits (341), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 95/349 (27%), Positives = 172/349 (49%), Gaps = 61/349 (17%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR--------SVGLVL-----A 47
           + ++ GG S+E EVSL S K    A++ + F V  + +D+        +   +L     A
Sbjct: 6   VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPA 65

Query: 48  H--LKP----------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
           H  L+P                            D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  HIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS---------PPY 128
           P+  S +LASA  MDK  +K+++   G+ + P I + R    ++H IS          P 
Sbjct: 126 PFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRA---NRHNISFAEVESKLGLPL 182

Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD 188
            +KP   GSS+G+  +  ++   + +  +  ++H  ++++EQ + G E+ C V+G+ +  
Sbjct: 183 FVKPANQGSSVGVSKVTSEEQYTIAVDLAFEFDH--KVIVEQGIKGREIECAVLGNNNPQ 240

Query: 189 VTEIA--VPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
            +     V  SDFY+Y+ KY   +    V+PA I  +I  +++ +A  A+Q +GC G++R
Sbjct: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            D    P   +V   EIN  PG T +S++P++   +G  + +L+  ++E
Sbjct: 301 VDVFLTP-ENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIE 348


>gi|255009929|ref|ZP_05282055.1| D-alanyl-alanine synthetase A [Bacteroides fragilis 3_1_12]
 gi|313147716|ref|ZP_07809909.1| D-Ala-D-Ala ligase [Bacteroides fragilis 3_1_12]
 gi|313136483|gb|EFR53843.1| D-Ala-D-Ala ligase [Bacteroides fragilis 3_1_12]
          Length = 324

 Score =  135 bits (341), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 91/323 (28%), Positives = 162/323 (50%), Gaps = 33/323 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKV-----------------SQIDVDRSVG 43
           +A++ GG +SE  VSL S +   S ++   + +                 S+  VDR+  
Sbjct: 5   IAIVAGGDTSEIVVSLRSAQGIYSFIDKEKYNLYIVEMEGRRWEVQLPDGSKTPVDRNDF 64

Query: 44  LVLAHLKP---DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
             +   +    D A+  +HG  GEDG +Q   +++ IPY+  G+LA+A++ DK    Q +
Sbjct: 65  SFMNGAEKVVFDFAYITIHGTPGEDGRLQGYFDMMRIPYSCCGVLAAAITYDKFVCNQYL 124

Query: 101 SSCGVPVCPSILVNRF-TMDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
            + GV +  S+L+ +  T+  + +I     P  IKP  GGSS G+  +K  + I   +  
Sbjct: 125 KAFGVRISESLLLRQGQTVSDEDVIEKIGLPCFIKPNLGGSSFGVTKVKTREQIQPAI-- 182

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV----TEIAVPKSDFYSYELKYSSLNST 212
           + ++   ++++IE ++ G ELTCG        V    TE+ V  ++F+ Y+ KY+     
Sbjct: 183 AKAFGEAEEVMIEAFMAGTELTCGCYKTKEKSVVFPLTEV-VTHNEFFDYDAKYNG-QVD 240

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
            + PA++  ++ K VQ L    +  +GC GI R D++      K+  LE+N  PGMT  S
Sbjct: 241 EITPARVSEELTKRVQALTSAIYDILGCSGIIRVDYIITE-GEKINLLEVNTTPGMTATS 299

Query: 273 IFPEMAAYAGYSFRELLLWMVED 295
             P+    AG   ++++  ++E+
Sbjct: 300 FIPQQVRAAGMDIKDVMTDIIEN 322


>gi|82542872|ref|YP_406819.1| D-alanyl-alanine synthetase A [Shigella boydii Sb227]
 gi|81244283|gb|ABB64991.1| D-alanine-D-alanine ligase A [Shigella boydii Sb227]
 gi|320187588|gb|EFW62271.1| D-alanine--D-alanine ligase [Shigella flexneri CDC 796-83]
 gi|332098498|gb|EGJ03464.1| D-alanine--D-alanine ligase [Shigella boydii 3594-74]
          Length = 364

 Score =  135 bits (341), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 95/349 (27%), Positives = 172/349 (49%), Gaps = 61/349 (17%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR--------SVGLVL-----A 47
           + ++ GG S+E EVSL S K    A++ + F V  + +D+        +   +L     A
Sbjct: 6   VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPA 65

Query: 48  H--LKP----------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
           H  L+P                            D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  HIALRPSATSLAQVPSKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS---------PPY 128
           P+  S +LASA  MDK  +K+++   G+ + P I + R    ++H IS          P 
Sbjct: 126 PFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRA---NRHNISFAEVESKLRLPL 182

Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD 188
            +KP   GSS+G+  +  ++   + +  +  ++H  ++++EQ + G E+ C V+G+ +  
Sbjct: 183 FVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDH--KVIVEQGIKGREIECAVLGNDNPQ 240

Query: 189 VTEIA--VPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
            +     V  SDFY+Y+ KY   +    V+PA I  +I  +++ +A  A+Q +GC G++R
Sbjct: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            D    P   +V   EIN  PG T +S++P++   +G  + +L+  ++E
Sbjct: 301 VDVFLTP-ENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIE 348


>gi|330466252|ref|YP_004403995.1| D-alanine--D-alanine ligase [Verrucosispora maris AB-18-032]
 gi|328809223|gb|AEB43395.1| D-alanine--D-alanine ligase [Verrucosispora maris AB-18-032]
          Length = 368

 Score =  135 bits (341), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 86/258 (33%), Positives = 139/258 (53%), Gaps = 17/258 (6%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-S 110
           D+ F VLHG +GEDG +Q +LE+  IPY  + + ASA +MDK  +K++ ++ G+P+ P +
Sbjct: 107 DVVFPVLHGAYGEDGTIQGMLEMAGIPYVGAKVFASAAAMDKEFTKKICAAEGIPIGPYA 166

Query: 111 ILVNRFTM---DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL 167
           +L +  T+   D Q L  P +V KP + GSS G  V K      L+   + +     ++L
Sbjct: 167 VLRSGMTLSEEDKQRLGLPVFV-KPSRAGSSFG--VSKVSDWADLEAAIAIAREIDSKVL 223

Query: 168 IEQYVDGIELTCGVMGDASLDVTEIAVPKS-------DFYSYELKYSSLNST--HVLPAK 218
           +E  + G E+ CGV+   +    E +V          DFY +E KY    S   + +PA 
Sbjct: 224 VEGAIIGREIECGVLEGEAGGTPEASVLAEVRVVGDYDFYDFEAKYIDAESACEYDVPAD 283

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278
           +P  + ++V+  A  A  A+ C G++R+DF   P    ++  EIN  PG TP S+FP M 
Sbjct: 284 LPERVARQVRDYAVRAFTALDCAGLARADFFVTP-ELDIYLNEINTMPGFTPTSMFPRMW 342

Query: 279 AYAGYSFRELLLWMVEDA 296
           A +G  + +L+  ++  A
Sbjct: 343 AASGLEYPKLVDRLIRTA 360


>gi|238854349|ref|ZP_04644691.1| vancomycin/teicoplanin A-type resistance protein VanA
           [Lactobacillus jensenii 269-3]
 gi|260665042|ref|ZP_05865892.1| D-alanine-D-alanine ligase [Lactobacillus jensenii SJ-7A-US]
 gi|282931753|ref|ZP_06337238.1| D-alanine--D-alanine ligase [Lactobacillus jensenii 208-1]
 gi|313472963|ref|ZP_07813450.1| D-alanine--D-alanine ligase [Lactobacillus jensenii 1153]
 gi|238832971|gb|EEQ25266.1| vancomycin/teicoplanin A-type resistance protein VanA
           [Lactobacillus jensenii 269-3]
 gi|239528848|gb|EEQ67849.1| D-alanine--D-alanine ligase [Lactobacillus jensenii 1153]
 gi|260561096|gb|EEX27070.1| D-alanine-D-alanine ligase [Lactobacillus jensenii SJ-7A-US]
 gi|281304060|gb|EFA96177.1| D-alanine--D-alanine ligase [Lactobacillus jensenii 208-1]
          Length = 361

 Score =  135 bits (341), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 91/340 (26%), Positives = 169/340 (49%), Gaps = 48/340 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           + ++ GG SSE EVS+ SG    +A++   + V  I + +                    
Sbjct: 7   VGLIFGGNSSEYEVSIVSGHNIYNAIDKEKYDVYPIWLTKDNYFASLEDSKKVWDDPTYT 66

Query: 46  ---------------LAHL-KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
                          LA+L + D+ F ++HGN GEDG++Q    +L+ P+    +LA+A+
Sbjct: 67  IKNPHKLANVSNFEQLANLPEMDVYFPIVHGNIGEDGVIQGFFRMLDKPFVGDDVLAAAV 126

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPY-----------VIKPLKGGSS 138
           +MDK  +K +    GVPV   + + RF  + ++     Y            +KP   GSS
Sbjct: 127 TMDKEFTKILAQRAGVPVADWVAIKRFEYNDKNNSKLDYKYVSEKLGTDLFVKPSNQGSS 186

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVP 195
           +GI  +K +      L +  ++ + D++L+E+ + G E+   V+G+  + V+   +I   
Sbjct: 187 VGITHVKSESDYLPALAE--AFKYDDKVLVEEAITGTEVETAVLGNDDIIVSGVGQIINA 244

Query: 196 KSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
           K  FYSY+ KY   ++T + +PA +P +I ++V+  A   ++A  C G++R D +     
Sbjct: 245 KGSFYSYKNKYDDSSTTTLQIPADLPAEIVEKVRSNAEKIYRATECSGMARIDSMLRTSD 304

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            +V + E+N  PG T +S++P++   AG  + +L+  ++E
Sbjct: 305 HEVIFNELNALPGFTNISMYPKLFEEAGIKYTDLISRLIE 344


>gi|253564150|ref|ZP_04841607.1| D-alanyl-alanine synthetase A [Bacteroides sp. 3_2_5]
 gi|251947926|gb|EES88208.1| D-alanyl-alanine synthetase A [Bacteroides sp. 3_2_5]
 gi|301161554|emb|CBW21094.1| putative D-Alanine-D-Alanine-Ligase [Bacteroides fragilis 638R]
          Length = 324

 Score =  135 bits (341), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 91/323 (28%), Positives = 160/323 (49%), Gaps = 33/323 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKV-----------------SQIDVDRSVG 43
           +A++ GG +SE  VSL S +   S ++   + +                 S+  VDR+  
Sbjct: 5   IAIVAGGDTSEIVVSLRSAQGIYSFIDKEKYNLYIVEMEGRRWEVQLPDGSKTPVDRNDF 64

Query: 44  LVLAHLKP---DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
             +   +    D A+  +HG  GEDG +Q   +++ IPY+  G+LA+A++ DK    Q +
Sbjct: 65  SFMNGAEKVVFDFAYITIHGTPGEDGRLQGYFDMMRIPYSCCGVLAAAITYDKFVCNQYL 124

Query: 101 SSCGVPVCPSILVNRFTM----DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
            + GV +  S+L+ +       D    I  P  IKP  GGSS G+  +K  + I   +  
Sbjct: 125 KAFGVRISESLLLRQGQAVSDEDVVEKIGLPCFIKPNLGGSSFGVTKVKTREQIQPAI-- 182

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV----TEIAVPKSDFYSYELKYSSLNST 212
           + +++  ++++IE ++ G ELTCG        V    TE+ V  ++F+ Y+ KY+     
Sbjct: 183 AKAFSEAEEVMIEAFMGGTELTCGCYKTKEKSVVFPLTEV-VTHNEFFDYDAKYNG-QVD 240

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
            + PA+I  ++ + VQ L    +  +GC GI R D++      K+  LE+N  PGMT  S
Sbjct: 241 EITPARISEELTRRVQTLTSAIYDILGCSGIIRVDYIITE-GEKINLLEVNTTPGMTATS 299

Query: 273 IFPEMAAYAGYSFRELLLWMVED 295
             P+    AG   ++++  ++E+
Sbjct: 300 FIPQQVRAAGLDIKDVMTDIIEN 322


>gi|333008568|gb|EGK28036.1| D-alanine--D-alanine ligase [Shigella flexneri VA-6]
          Length = 364

 Score =  135 bits (341), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 95/349 (27%), Positives = 172/349 (49%), Gaps = 61/349 (17%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR--------SVGLVL-----A 47
           + ++ GG S+E EVSL S K    A++ + F V  + +D+        +   +L     A
Sbjct: 6   VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPA 65

Query: 48  H--LKP----------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
           H  L+P                            D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  HIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS---------PPY 128
           P+  S +LASA  MDK  +K+++   G+ + P I + R    ++H IS          P 
Sbjct: 126 PFVGSDVLASATCMDKDVTKRLLRDAGLNIAPFITLTRA---NRHNISFAEVESKLGLPL 182

Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD 188
            +KP   GSS+G+  +  ++   + +  +  ++H  ++++EQ + G E+ C V+G+ +  
Sbjct: 183 FVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDH--KVIVEQGIKGREIECAVLGNDNPQ 240

Query: 189 VTEIA--VPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
            +     V  SDFY+Y+ KY   +    V+PA I  +I  +++ +A  A+Q +GC G++R
Sbjct: 241 ASTCGELVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            D    P   +V   EIN  PG T +S++P++   +G  + +L+  ++E
Sbjct: 301 VDVFLTP-ENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIE 348


>gi|307312242|ref|ZP_07591878.1| D-alanine/D-alanine ligase [Escherichia coli W]
 gi|331666726|ref|ZP_08367600.1| D-alanine--D-alanine ligase A (D-alanylalanine synthetaseA)
           (D-Ala-D-Ala ligase A) [Escherichia coli TA271]
 gi|306907744|gb|EFN38246.1| D-alanine/D-alanine ligase [Escherichia coli W]
 gi|315059660|gb|ADT73987.1| D-alanine-D-alanine ligase A [Escherichia coli W]
 gi|320201621|gb|EFW76197.1| D-alanine--D-alanine ligase [Escherichia coli EC4100B]
 gi|323379775|gb|ADX52043.1| D-alanine/D-alanine ligase [Escherichia coli KO11]
 gi|331065950|gb|EGI37834.1| D-alanine--D-alanine ligase A (D-alanylalanine synthetaseA)
           (D-Ala-D-Ala ligase A) [Escherichia coli TA271]
          Length = 364

 Score =  135 bits (341), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 95/349 (27%), Positives = 172/349 (49%), Gaps = 61/349 (17%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR--------SVGLVL-----A 47
           + ++ GG S+E EVSL S K    A++ + F V  + +D+        +   +L     A
Sbjct: 6   VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPA 65

Query: 48  H--LKP----------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
           H  L+P                            D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  HIALRPSATSLAQVPGKHEHQLIDAQNGQPLLTVDVIFPIVHGTLGEDGSLQGMLRVANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS---------PPY 128
           P+  S +LASA  MDK  +K+++   G+ + P I + R    ++H IS          P 
Sbjct: 126 PFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRA---NRHNISFAEVESKLGLPL 182

Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD 188
            +KP   GSS+G+  +  ++   + +  +  ++H  ++++EQ + G E+ C V+G+ +  
Sbjct: 183 FVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDH--KVIVEQGIKGREIECAVLGNDNPQ 240

Query: 189 VTEIA--VPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
            +     V  SDFY+Y+ KY   +    V+PA I  +I  +++ +A  A+Q +GC G++R
Sbjct: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            D    P   +V   EIN  PG T +S++P++   +G  + +L+  ++E
Sbjct: 301 VDVFLTP-ENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIE 348


>gi|224536386|ref|ZP_03676925.1| hypothetical protein BACCELL_01260 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224521999|gb|EEF91104.1| hypothetical protein BACCELL_01260 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 324

 Score =  135 bits (341), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 91/323 (28%), Positives = 161/323 (49%), Gaps = 33/323 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-----------------VDR--- 40
           +A++ GG +SE +VSL S +   S ++   + +  ++                 +DR   
Sbjct: 5   IAIVCGGDTSEFQVSLRSAQGIYSFIDKEKYTLYIVEMHGLDWHVQLPDGGKAPIDRNDF 64

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           S  +    +  D A+  +HG  GEDG +Q   +LL IPY+  G+LA+AL+ DK    Q +
Sbjct: 65  SFQMNGRKVTFDFAYITIHGTPGEDGRLQGYFDLLHIPYSCCGVLAAALTYDKFACNQYL 124

Query: 101 SSCGVPVCPSILVNRFTM----DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
              GV +  S+++ +       D    I  P  IKP  GGSS G+  +K  + I   +++
Sbjct: 125 KVFGVRIAESLVLRQGQSISDEDVIEKIGLPCFIKPSLGGSSFGVTKVKTKEQIQPAIVK 184

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDAS----LDVTEIAVPKSDFYSYELKYSSLNST 212
             +++   ++LIE Y++G E+TCG            +TE+ V +++F+ Y+ KY+    +
Sbjct: 185 --AFDEAQEVLIEAYMEGTEVTCGCYKTKEKSVVFPITEV-VTENEFFDYDAKYNG-QVS 240

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
            + PA++  D+   +Q L    +  +G  GI R D++      KV  LE+N  PGMT  S
Sbjct: 241 EITPARLSDDLTHRIQTLTSAIYDILGASGIIRVDYII-TAGDKVNLLEVNTTPGMTATS 299

Query: 273 IFPEMAAYAGYSFRELLLWMVED 295
             P+    AG   ++++  ++E+
Sbjct: 300 FIPQQVRAAGLDIKDVMTDIIEN 322


>gi|332094526|gb|EGI99572.1| D-alanine--D-alanine ligase [Shigella boydii 5216-82]
          Length = 364

 Score =  135 bits (341), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 95/349 (27%), Positives = 172/349 (49%), Gaps = 61/349 (17%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR--------SVGLVL-----A 47
           + ++ GG S+E EVSL S K    A++ + F V  + +D+        +   +L     A
Sbjct: 6   VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPA 65

Query: 48  H--LKP----------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
           H  L+P                            D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  HIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS---------PPY 128
           P+  S +LASA  MDK  +K+++   G+ + P I + R    ++H IS          P 
Sbjct: 126 PFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTR---TNRHNISFAEVESKLGLPL 182

Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD 188
            +KP   GSS+G+  +  ++   + +  +  ++H  ++++EQ + G E+ C V+G+ +  
Sbjct: 183 FVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDH--KVIVEQGIKGREIECAVLGNDNPQ 240

Query: 189 VTEIA--VPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
            +     V  SDFY+Y+ KY   +    V+PA I  +I  +++ +A  A+Q +GC G++R
Sbjct: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            D    P   +V   EIN  PG T +S++P++   +G  + +L+  ++E
Sbjct: 301 VDVFLTP-ENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIE 348


>gi|74310948|ref|YP_309367.1| D-alanyl-alanine synthetase A [Shigella sonnei Ss046]
 gi|73854425|gb|AAZ87132.1| D-alanine-D-alanine ligase A [Shigella sonnei Ss046]
          Length = 364

 Score =  135 bits (341), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 92/346 (26%), Positives = 170/346 (49%), Gaps = 55/346 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR--------SVGLVL-----A 47
           + ++ GG S+E EVSL S K    A++ + F V  + +D+        +   +L     A
Sbjct: 6   VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPA 65

Query: 48  H--LKP----------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
           H  L+P                            D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  HIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVIK 131
           P+  S +LASA  MDK  +K+++   G+ + P I + R    +      +  +  P  +K
Sbjct: 126 PFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  +  ++   + +  +  ++H  ++++EQ + G E+ C V+G+ +   + 
Sbjct: 186 PANQGSSVGVSKVTSEEQYAIAVDLAFEFDH--KVIVEQGIKGREIECAVLGNDNPQAST 243

Query: 192 IA--VPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               V  SDFY+Y+ KY   +    V+PA I  +I  +++ +A  A+Q +GC G++R D 
Sbjct: 244 CGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
              P   +V   EIN  PG T +S++P++   +G  + +L+  ++E
Sbjct: 304 FLTP-ENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIE 348


>gi|116628785|ref|YP_813957.1| D-alanine-D-alanine ligase related ATP-grasp enzyme [Lactobacillus
           gasseri ATCC 33323]
 gi|116094367|gb|ABJ59519.1| D-alanine--D-alanine ligase [Lactobacillus gasseri ATCC 33323]
          Length = 375

 Score =  135 bits (341), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 81/261 (31%), Positives = 140/261 (53%), Gaps = 19/261 (7%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+ F ++HGN GEDG +Q +  +L+ P+    +LA+A++MDK  +K +    GVPV   I
Sbjct: 103 DVFFPIVHGNLGEDGCLQGLFRVLDKPFVGDDVLAAAVTMDKEMTKILAQRAGVPVAKWI 162

Query: 112 LVNRFTMD--SQHLISPPYV---------IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160
            V RF  +    + +   YV         +KP   GSS+G+  +  ++   + L  + ++
Sbjct: 163 AVKRFEYNDPDNNKLDYEYVASQLGSDLFVKPSNQGSSVGVSHVTNEKEYKVAL--AEAF 220

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDAS---LDVTEIAVPKSDFYSYELKYSSLNSTHVL-- 215
            + D++L+E+ V G E+   V+G+       V +I   K  FY+YE KY   NST  L  
Sbjct: 221 KYDDKVLVEETVHGTEVETAVLGNDKPIVAGVGQIINAKDSFYTYENKYDD-NSTSTLEI 279

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275
           PAK+P  I ++V++ A    QA  C G++R D +     ++V   E+N  PG T +S++P
Sbjct: 280 PAKLPEGIVEKVRKNALKVFQATECSGLARIDSMLRTEDKEVVLTEVNALPGFTNISMYP 339

Query: 276 EMAAYAGYSFRELLLWMVEDA 296
           ++    G  + +L+  +++ A
Sbjct: 340 KLFEEVGIPYTDLITKLIDYA 360


>gi|291281284|ref|YP_003498102.1| D-alanine--D-alanine ligase A [Escherichia coli O55:H7 str. CB9615]
 gi|209744410|gb|ACI70512.1| D-alanine-D-alanine ligase A [Escherichia coli]
 gi|290761157|gb|ADD55118.1| D-alanine--D-alanine ligase A [Escherichia coli O55:H7 str. CB9615]
          Length = 364

 Score =  135 bits (340), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 95/349 (27%), Positives = 172/349 (49%), Gaps = 61/349 (17%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR--------SVGLVL-----A 47
           + ++ GG S+E EVSL S K    A++ + F V  + +D+        +   +L     A
Sbjct: 6   VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPA 65

Query: 48  H--LKP----------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
           H  L+P                            D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  HIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS---------PPY 128
           P+  S +LASA  MDK  +K+++   G+ + P I + R    ++H IS          P 
Sbjct: 126 PFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRA---NRHNISFAEVEAKLGLPL 182

Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD 188
            +KP   GSS+G+  +  ++   + +  +  ++H  ++++EQ + G E+ C V+G+ +  
Sbjct: 183 FVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDH--KVIVEQGIKGREIECAVLGNDNPQ 240

Query: 189 VTEIA--VPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
            +     V  SDFY+Y+ KY   +    V+PA I  +I  +++ +A  A+Q +GC G++R
Sbjct: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            D    P   +V   EIN  PG T +S++P++   +G  + +L+  ++E
Sbjct: 301 VDVFLTP-ENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIE 348


>gi|89891675|ref|ZP_01203178.1| D-alanine, D-alanine ligase [Flavobacteria bacterium BBFL7]
 gi|89516010|gb|EAS18674.1| D-alanine, D-alanine ligase [Flavobacteria bacterium BBFL7]
          Length = 326

 Score =  135 bits (340), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 96/324 (29%), Positives = 161/324 (49%), Gaps = 34/324 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40
           + VLMGG SSE ++SL SG   A  L+   F V  I +                    D 
Sbjct: 4   IGVLMGGYSSEWQISLKSGAVIAKHLDKNLFNVFPIAILEDGWYYSDDANNRHVVDKNDF 63

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           S+ +   H+  D  +N +HG  GEDG +QA LELL IP T      SA++ +K     V+
Sbjct: 64  SITVNDKHITFDCLYNTIHGTPGEDGKIQAYLELLNIPQTSCDSYQSAITFNKRDCIAVL 123

Query: 101 SSCGVPVCPSILVNR----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
              G+     I +N+       D    +  PY +K  + GSS G+  + K + +   L  
Sbjct: 124 KPWGIYTGKHIYLNKGADYNATDISKRLGLPYFVKANRSGSSFGVSKVYKTEELEKALEL 183

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGV--MGDA--SLDVTEIAVPKSDFYSYELKYSSLNST 212
           + S +  D++++E ++DG E++ G+  +G+   +L  TEI V  +DF+ YE KY    S 
Sbjct: 184 AFSVD--DEVILESFLDGTEVSVGIYQLGEEIIALPPTEI-VSDNDFFDYEAKYQG-KSQ 239

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
            + PA+I +++   VQ  +   +  + C+GI+R+DF+F   +    ++EIN  PGM+  S
Sbjct: 240 EITPARISVELTLAVQEQSKRIYSVLKCKGIARADFIFHDGTPH--FIEINTNPGMSTES 297

Query: 273 IFPEMAAYAGYSFRELLLWMVEDA 296
           I P+       + +++   ++E+ 
Sbjct: 298 IIPQQIRATDKTLQQVFTEVIENT 321


>gi|187731227|ref|YP_001879088.1| D-alanyl-alanine synthetase A [Shigella boydii CDC 3083-94]
 gi|187428219|gb|ACD07493.1| D-alanine--D-alanine ligase A [Shigella boydii CDC 3083-94]
 gi|320174503|gb|EFW49641.1| D-alanine--D-alanine ligase [Shigella dysenteriae CDC 74-1112]
          Length = 364

 Score =  135 bits (340), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 95/349 (27%), Positives = 172/349 (49%), Gaps = 61/349 (17%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR--------SVGLVL-----A 47
           + ++ GG S+E EVSL S K    A++ + F V  + +D+        +   +L     A
Sbjct: 6   VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPA 65

Query: 48  H--LKP----------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
           H  L+P                            D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  HIALRPSATSLAQVPSKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS---------PPY 128
           P+  S +LASA  MDK  +K+++   G+ + P I + R    ++H IS          P 
Sbjct: 126 PFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRA---NRHNISFAEVESKLGLPL 182

Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD 188
            +KP   GSS+G+  +  ++   + +  +  ++H  ++++EQ + G E+ C V+G+ +  
Sbjct: 183 FVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDH--KVIVEQGIKGREIECAVLGNDNPQ 240

Query: 189 VTEIA--VPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
            +     V  SDFY+Y+ KY   +    V+PA I  +I  +++ +A  A+Q +GC G++R
Sbjct: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            D    P   +V   EIN  PG T +S++P++   +G  + +L+  ++E
Sbjct: 301 VDVFLTP-ENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIE 348


>gi|320450994|ref|YP_004203090.1| D-alanine--D-alanine ligase [Thermus scotoductus SA-01]
 gi|320151163|gb|ADW22541.1| D-alanine--D-alanine ligase [Thermus scotoductus SA-01]
          Length = 322

 Score =  135 bits (340), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 83/248 (33%), Positives = 139/248 (56%), Gaps = 8/248 (3%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+ F +LHG +GEDG +Q  LE+L  PY  +G+ ASAL MDK  SK++++  G+PV P +
Sbjct: 78  DVVFPLLHGRWGEDGTIQGFLEILGKPYVGAGVAASALCMDKDLSKRILAQAGIPVVPWV 137

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
            + +           P+ +KP   GSS+GI  +  +    L+   + ++ H  + ++EQ 
Sbjct: 138 ALYQGERPFIPFDP-PFFVKPANTGSSIGIRRV--EHYAELEEALAEAFRHDQKAVVEQA 194

Query: 172 VDGI-ELTCGVMGDASLDVTEIAVPK--SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           + G+ EL  G++G+   + + +   +  + FY YE KY+   +  ++PA +     + VQ
Sbjct: 195 LSGVRELEVGILGNIFGEASPVGEVRYQAAFYDYETKYTPGRAELLIPAPLDPGTQETVQ 254

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
            LA  A++ +G RG++R+DF       +V+  EIN  PG TP S++P + A  G  + EL
Sbjct: 255 ELALKAYRLLGIRGMARADFFLA--EGEVYLNEINTIPGFTPTSMYPRLFAAGGLPYPEL 312

Query: 289 LLWMVEDA 296
           L  +VE A
Sbjct: 313 LRRLVELA 320


>gi|71892247|ref|YP_277981.1| D-alanyl-alanine synthetase A [Candidatus Blochmannia
           pennsylvanicus str. BPEN]
 gi|123640879|sp|Q492J5|DDL_BLOPB RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|71796353|gb|AAZ41104.1| D-alanine:D-alanine ligase A [Candidatus Blochmannia pennsylvanicus
           str. BPEN]
          Length = 368

 Score =  135 bits (340), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 96/340 (28%), Positives = 174/340 (51%), Gaps = 47/340 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFK-------------VSQIDV-------DR 40
           + ++ GG S E E+SL S    A  ++   F+             +  ID        D 
Sbjct: 6   IGIICGGRSLEHEISLKSAMCIAQFIDKFRFEAMILWIDKKGCWHLKDIDFNDLSYHKDE 65

Query: 41  SVGLVLAH---------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
            + ++L +               LK D+ F V+HG  GEDG +Q +L ++ +P+  S +L
Sbjct: 66  KISILLQNCPYPFKFHTKNINILLKFDVIFPVVHGTLGEDGALQGLLCMMNLPFVGSNVL 125

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILV---NRFTMDSQHLISP---PYVIKPLKGGSSL 139
           +S++ MDK  SK ++   G+ V P   V   ++  +D  + +S    P  +KP   GSS+
Sbjct: 126 SSSVGMDKDVSKCLLRDAGLSVVPFRTVLAQDQHNIDFDYFVSIFGLPLFVKPSNQGSSI 185

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPK 196
           G+  + K +   L L+++ S++  +++LIE  + G EL C V+G+ +  ++   E+ +  
Sbjct: 186 GVSKVTKCKDFNLALIKAFSFS--NKILIEPAIIGRELECAVLGNDNPKISVCGEVILSD 243

Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256
           ++FY+Y  KY    +  ++PA I   I  +++ +A  A Q + C G++R D +F  L  K
Sbjct: 244 NNFYTYHDKYVKRKAQIMIPALINDAISDDIRHIALRAFQVLNCSGMARVD-VFLNLDNK 302

Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +F  E+N  PG T  S++P++   +G + +EL+  +VE A
Sbjct: 303 IFINEVNTLPGFTFDSMYPKLWEVSGLNLQELITKLVELA 342


>gi|302542245|ref|ZP_07294587.1| D-alanine-D-alanine ligase [Streptomyces hygroscopicus ATCC 53653]
 gi|302459863|gb|EFL22956.1| D-alanine-D-alanine ligase [Streptomyces himastatinicus ATCC 53653]
          Length = 390

 Score =  135 bits (340), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 92/263 (34%), Positives = 139/263 (52%), Gaps = 23/263 (8%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+ F +LHG +GEDG +Q +LEL  +PY  +G+LASA+ MDK   K+V  S G+PV P  
Sbjct: 125 DVVFPMLHGPYGEDGTLQGLLELSGVPYVGAGVLASAVGMDKEYMKRVFVSFGLPVGPYE 184

Query: 112 LVN-----RFTMDSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
           ++      R    ++  I+        P  +KP + GSS+GI   K D    LD     +
Sbjct: 185 VLRPRDWERDPAAARARITDFAAEHGWPVFVKPSRAGSSIGI--TKVDGPEQLDEAIEEA 242

Query: 160 WNHGDQLLIEQYVDGIELTCGVM-----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHV 214
             H  ++++E  + G E+ CGV+       AS+      V   DFY +E KY    +  V
Sbjct: 243 RRHDPKVIVEALLRGREIECGVLEFEDGPRASVPAEIPPVSTHDFYDFEAKYID-AAPGV 301

Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD-FLFDPLSRKVFWLEINVQPGMTPVSI 273
           +PA +  +  + VQ LA  A  A+ C G+ R+D FL D  S +    EIN  PG TP+S+
Sbjct: 302 VPAPLTAEETERVQELAVRAFDAVSCEGLVRADFFLLD--SGEFVINEINTMPGFTPISM 359

Query: 274 FPEMAAYAGYSFRELLLWMVEDA 296
           +P M   +G S+ EL+  +++ A
Sbjct: 360 YPRMWQESGVSYPELVDRLIQAA 382


>gi|218688244|ref|YP_002396456.1| D-alanyl-alanine synthetase A [Escherichia coli ED1a]
 gi|218425808|emb|CAR06614.1| D-alanine-D-alanine ligase A [Escherichia coli ED1a]
          Length = 364

 Score =  135 bits (340), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 95/349 (27%), Positives = 172/349 (49%), Gaps = 61/349 (17%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR--------SVGLVL-----A 47
           + ++ GG S+E EVSL S K    A++ + F V  + +D+        +   +L     A
Sbjct: 6   VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDANNYLLNADDPA 65

Query: 48  H--LKP----------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
           H  L+P                            D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  HIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS---------PPY 128
           P+  S +LASA  MDK  +K+++   G+ + P I + R    ++H IS          P 
Sbjct: 126 PFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRA---NRHNISFAEVESKLGLPL 182

Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD 188
            +KP   GSS+G+  +  ++   + +  +  ++H  ++++EQ + G E+ C V+G+ +  
Sbjct: 183 FVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDH--KVIVEQGIKGREIECAVLGNDNPQ 240

Query: 189 VTEIA--VPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
            +     V  SDFY+Y+ KY   +    V+PA I  +I  +++ +A  A+Q +GC G++R
Sbjct: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            D    P   +V   EIN  PG T +S++P++   +G  + +L+  ++E
Sbjct: 301 VDVFLTP-ENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIE 348


>gi|53711781|ref|YP_097773.1| D-alanyl-alanine synthetase A [Bacteroides fragilis YCH46]
 gi|81383704|sp|Q64Z37|DDL_BACFR RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|52214646|dbj|BAD47239.1| D-alanine--D-alanine ligase [Bacteroides fragilis YCH46]
          Length = 324

 Score =  135 bits (340), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 91/323 (28%), Positives = 160/323 (49%), Gaps = 33/323 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKV-----------------SQIDVDRSVG 43
           +A++ GG +SE  VSL S +   S ++   + +                 S+  VDR+  
Sbjct: 5   IAIVAGGDTSEIVVSLRSAQGIYSFIDKEKYNLYIVEMEGRRWEVQLPDGSKTPVDRNDF 64

Query: 44  LVLAHLKP---DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
             +   +    D A+  +HG  GEDG +Q   +++ IPY+  G+LA+A++ DK    Q +
Sbjct: 65  SFINGAEKVVFDFAYITIHGTPGEDGRLQGYFDMMRIPYSCCGVLAAAITYDKFVCNQYL 124

Query: 101 SSCGVPVCPSILVNRFTM----DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
            + GV +  S+L+ +       D    I  P  IKP  GGSS G+  +K  + I   +  
Sbjct: 125 KAFGVRISESLLLRQGQAVSDEDVVEKIGLPCFIKPNLGGSSFGVTKVKTREQIQPAI-- 182

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV----TEIAVPKSDFYSYELKYSSLNST 212
           + +++  ++++IE ++ G ELTCG        V    TE+ V  ++F+ Y+ KY+     
Sbjct: 183 AKAFSEAEEVMIEAFMGGTELTCGCYKTKEKSVVFPLTEV-VTHNEFFDYDAKYNG-QVD 240

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
            + PA+I  ++ + VQ L    +  +GC GI R D++      K+  LE+N  PGMT  S
Sbjct: 241 EITPARISEELTRRVQTLTSAIYDILGCSGIIRVDYIITE-GEKINLLEVNTTPGMTATS 299

Query: 273 IFPEMAAYAGYSFRELLLWMVED 295
             P+    AG   ++++  ++E+
Sbjct: 300 FIPQQVRAAGLDIKDVMTDIIEN 322


>gi|312886956|ref|ZP_07746560.1| D-alanine/D-alanine ligase [Mucilaginibacter paludis DSM 18603]
 gi|311300268|gb|EFQ77333.1| D-alanine/D-alanine ligase [Mucilaginibacter paludis DSM 18603]
          Length = 328

 Score =  135 bits (340), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 95/327 (29%), Positives = 161/327 (49%), Gaps = 36/327 (11%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKV-----------------SQIDVDR--- 40
           +A+L GG S E EVS+ S +  A+ L    +KV                   ID+D+   
Sbjct: 4   IALLAGGFSGEYEVSVKSAQYIAANLPAEKYKVYTILITADGWFYESEGGEHIDIDKNDF 63

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           S+ L    +K D AF  +HG  GEDG +Q   ++L IPY       SA++M+K  +K +V
Sbjct: 64  SLSLNGDRIKFDFAFITVHGTPGEDGKLQGYFDMLCIPYNTCDATTSAITMNKAYTKAIV 123

Query: 101 SSC-GVPVCPSILVNRFTMDSQHLISP------PYVIKPLKGGSSLGIIVIKKDQSIPLD 153
           +   G+    S+ +  F  D   + S       P  IKP  GGSS+G+  +    ++P  
Sbjct: 124 NGIEGLHTAKSMQL--FQHDGHDIASIAARLKFPLFIKPNNGGSSVGMSKVHNVAALPQA 181

Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCGVM---GDAS-LDVTEIAVPKSDFYSYELKYSSL 209
           L ++   +H  Q+L+E+++ G E + G++   G+   L  TEI +   +F+ YE KY+  
Sbjct: 182 LEKAFHEDH--QILVEEFIKGREFSIGIVRLHGELKVLPATEI-ISSKEFFDYEAKYTDG 238

Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
            +  + PA +  +  K + R+    +  + C G++R DF+    S+  +++EIN  PG T
Sbjct: 239 VTQEITPAHLSQEQVKTIARIVSEVYLRLNCHGMTRLDFILQEESQDFYFIEINTTPGQT 298

Query: 270 PVSIFPEMAAYAGYSFRELLLWMVEDA 296
             S+ P+    AG   ++    ++E A
Sbjct: 299 VNSLIPQQVRAAGMDIKDFYSALIEGA 325


>gi|300918244|ref|ZP_07134849.1| D-ala D-ala ligase [Escherichia coli MS 115-1]
 gi|300414587|gb|EFJ97897.1| D-ala D-ala ligase [Escherichia coli MS 115-1]
          Length = 364

 Score =  135 bits (340), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 92/346 (26%), Positives = 170/346 (49%), Gaps = 55/346 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR--------SVGLVL-----A 47
           + ++ GG S+E EVSL S K    A++ + F V  + +D+        +   +L     A
Sbjct: 6   VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPA 65

Query: 48  H--LKP----------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
           H  L+P                            D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  HIALRPSATSLAQVPGKHERQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVIK 131
           P+  S +LASA  MDK  +K+++   G+ + P I + R    +      +  +  P  +K
Sbjct: 126 PFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  +  ++   + +  +  ++H  ++++EQ + G E+ C V+G+ +   + 
Sbjct: 186 PANQGSSVGVSKVTSEEQYAIAVDLAFEFDH--KVIVEQGIKGREIECAVLGNDNPQAST 243

Query: 192 IA--VPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               V  SDFY+Y+ KY   +    V+PA I  +I  +++ +A  A+Q +GC G++R D 
Sbjct: 244 CGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
              P   +V   EIN  PG T +S++P++   +G  + +L+  ++E
Sbjct: 304 FLTP-ENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIE 348


>gi|297202608|ref|ZP_06920005.1| D-alanylalanine synthetase [Streptomyces sviceus ATCC 29083]
 gi|197709862|gb|EDY53896.1| D-alanylalanine synthetase [Streptomyces sviceus ATCC 29083]
          Length = 385

 Score =  135 bits (340), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 90/263 (34%), Positives = 140/263 (53%), Gaps = 23/263 (8%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+ F VLHG +GEDG +Q +LEL  +PY  SG+LASA+  DK   K+V +S G+ V P +
Sbjct: 120 DVVFPVLHGPYGEDGTLQGLLELSGVPYVGSGVLASAVGQDKEYMKRVFTSFGLKVGPYV 179

Query: 112 LVNRFTMDSQHLISP------------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
           ++     +     +             P  +KP + GSS+GI   K D    LD   + +
Sbjct: 180 VIRPREWEQNESAARKKIVDFAGEHGWPLFVKPARAGSSIGI--TKVDDLSGLDEAIAEA 237

Query: 160 WNHGDQLLIEQYVDGIELTCGVM----GDASLDVTEIAVPKSD-FYSYELKYSSLNST-H 213
            +H  ++L+E  + G E+ CGV+    G  +    EI  P+   +Y +E KY  ++ST  
Sbjct: 238 QSHDPKILVEAALRGREIECGVLEFEDGPRASVPAEIPPPQEHAYYDFEAKY--IDSTPG 295

Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273
           ++PA +  +   EVQ+LA  A  A  C G+ R+DF        V   EIN  PG TP+S+
Sbjct: 296 IVPAPLTPEETAEVQKLAVDAFDAASCEGLVRADFFLTEDGEFVI-NEINTLPGFTPISM 354

Query: 274 FPEMAAYAGYSFRELLLWMVEDA 296
           +P+M   +G ++ EL+  ++E A
Sbjct: 355 YPQMWEKSGIAYPELVDRLIEAA 377


>gi|255692431|ref|ZP_05416106.1| D-alanine--D-alanine ligase [Bacteroides finegoldii DSM 17565]
 gi|260621899|gb|EEX44770.1| D-alanine--D-alanine ligase [Bacteroides finegoldii DSM 17565]
          Length = 324

 Score =  135 bits (340), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 91/323 (28%), Positives = 161/323 (49%), Gaps = 33/323 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKV-----------------SQIDVDR--- 40
           +A++ GG +SE  VSL S +   S ++   + +                 +++ VDR   
Sbjct: 5   IAIVAGGDTSEIVVSLRSAQGIYSFIDKEKYNLYIVEMEGRRWEVQLPDGNKVPVDRNDF 64

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           S       +  D A+  +HG  GEDG +Q   ++L IPY+  G+LA+A++ DK    Q +
Sbjct: 65  SFTNGTEKVVFDFAYITIHGTPGEDGRLQGYFDMLRIPYSCCGVLAAAITYDKFACNQYL 124

Query: 101 SSCGVPVCPSILVNRFTM----DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
            + GV +  S+L+ +       D    I  P  IKP  GGSS G+  +K  + I   +++
Sbjct: 125 KAFGVRIAESLLLRQGQSVSDEDVIEKIGLPCFIKPSLGGSSFGVTKVKTKEQIQPAVVK 184

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV----TEIAVPKSDFYSYELKYSSLNST 212
             ++   +++++E +++G ELTCG        V    TE+ V  ++F+ Y+ KY+     
Sbjct: 185 --AFGEAEEVIVEAFMEGTELTCGCYKTKEKSVVFPPTEV-VTHNEFFDYDAKYNG-QVD 240

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
            + PA+I  ++   VQ+L    +  +GC GI R D++      K+  LE+N  PGMT  S
Sbjct: 241 EITPARISPELTGRVQKLTSAIYDILGCSGIIRVDYIVTA-GEKLNLLEVNTTPGMTATS 299

Query: 273 IFPEMAAYAGYSFRELLLWMVED 295
             P+    AG   ++++  ++E+
Sbjct: 300 FIPQQVRAAGLDIKDVMTDIIEN 322


>gi|224541777|ref|ZP_03682316.1| hypothetical protein CATMIT_00949 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525304|gb|EEF94409.1| hypothetical protein CATMIT_00949 [Catenibacterium mitsuokai DSM
           15897]
          Length = 342

 Score =  135 bits (340), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 73/252 (28%), Positives = 132/252 (52%), Gaps = 24/252 (9%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+ F VLHG FGEDG +Q +LE+ ++PY    ++AS  +MDK+ +K++     +P  PS+
Sbjct: 77  DVVFPVLHGQFGEDGTIQGLLEMAQVPYVGCRVMASCTAMDKIYAKKLFDQAHIPQVPSL 136

Query: 112 LVNRFTMDS-------------------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152
            V +   D                     HL  P +V K  + GSS+G   +     +  
Sbjct: 137 YVKKRYDDKLVVVDDEGRESFNVEMEIYTHLGFPCFV-KASRSGSSVGCYKVNSLTELLP 195

Query: 153 DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA--VPKSDFYSYELKYSSLN 210
            L ++++++    +++E+ ++  EL C V+G+  +  + +   +P  +FY+YE KY    
Sbjct: 196 RLHEAATYDR--HVVVEKAINATELECAVIGNDDISASRVGQILPHGEFYTYESKYEDEQ 253

Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270
           S   +PA++   I   +++ A  A +A+   G++R DF +D  +  V+  EIN  PG T 
Sbjct: 254 SATCIPARVDQSIQDYIRQAAVKAFKAVDGTGLARCDFFYDNDTGNVYLNEINTMPGFTN 313

Query: 271 VSIFPEMAAYAG 282
           +S++P++   AG
Sbjct: 314 ISMYPQLMKDAG 325


>gi|218703662|ref|YP_002411181.1| D-alanyl-alanine synthetase A [Escherichia coli UMN026]
 gi|293403498|ref|ZP_06647589.1| ddl [Escherichia coli FVEC1412]
 gi|298379109|ref|ZP_06988990.1| D-alanine-D-alanine ligase A [Escherichia coli FVEC1302]
 gi|300900436|ref|ZP_07118606.1| D-ala D-ala ligase [Escherichia coli MS 198-1]
 gi|331661753|ref|ZP_08362676.1| D-alanine--D-alanine ligase A (D-alanylalanine synthetaseA)
           (D-Ala-D-Ala ligase A) [Escherichia coli TA143]
 gi|218430759|emb|CAR11633.1| D-alanine-D-alanine ligase A [Escherichia coli UMN026]
 gi|291429351|gb|EFF02371.1| ddl [Escherichia coli FVEC1412]
 gi|298280222|gb|EFI21726.1| D-alanine-D-alanine ligase A [Escherichia coli FVEC1302]
 gi|300356082|gb|EFJ71952.1| D-ala D-ala ligase [Escherichia coli MS 198-1]
 gi|331060175|gb|EGI32139.1| D-alanine--D-alanine ligase A (D-alanylalanine synthetaseA)
           (D-Ala-D-Ala ligase A) [Escherichia coli TA143]
          Length = 364

 Score =  135 bits (340), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 95/349 (27%), Positives = 172/349 (49%), Gaps = 61/349 (17%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR--------SVGLVL-----A 47
           + ++ GG S+E EVSL S K    A++ + F V  + +D+        +   +L     A
Sbjct: 6   VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPA 65

Query: 48  H--LKP----------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
           H  L+P                            D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  HIALRPSATSLAQVPGKHEHQLIDTQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS---------PPY 128
           P+  S +LASA  MDK  +K+++   G+ + P I + R    ++H IS          P 
Sbjct: 126 PFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRA---NRHNISFAEVESKLGLPL 182

Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD 188
            +KP   GSS+G+  +  ++   + +  +  ++H  ++++EQ + G E+ C V+G+ +  
Sbjct: 183 FVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDH--KVIVEQGIKGREIECAVLGNDNPQ 240

Query: 189 VTEIA--VPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
            +     V  SDFY+Y+ KY   +    V+PA I  +I  +++ +A  A+Q +GC G++R
Sbjct: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            D    P   +V   EIN  PG T +S++P++   +G  + +L+  ++E
Sbjct: 301 VDVFLTP-ENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIE 348


>gi|38233721|ref|NP_939488.1| D-alanyl-alanine synthetase A [Corynebacterium diphtheriae NCTC
           13129]
 gi|81401496|sp|Q6NHK6|DDL_CORDI RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|38199982|emb|CAE49651.1| D-alanine--d-alanine ligase [Corynebacterium diphtheriae]
          Length = 365

 Score =  135 bits (340), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 93/298 (31%), Positives = 147/298 (49%), Gaps = 33/298 (11%)

Query: 12  REVSLSSGKACASAL--EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ 69
           REVSLS     A  L  ED                   + K D+ F VLHG FGEDG +Q
Sbjct: 85  REVSLSVNPTTAGELCFEDGSL----------------YAKVDVVFPVLHGRFGEDGTIQ 128

Query: 70  AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFTMDSQHLISP 126
            + EL  +PY  +G+L+SA  MDK  +K+++++ G+PV   +++      T + +  +  
Sbjct: 129 GLFELSGVPYVGTGVLSSACGMDKEFTKKLMAAEGLPVGKEVILRGSETLTEEHKRELGL 188

Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG--D 184
           P  +KP +GGSS+GI  +  D S   D   S +  H  ++++E  + G+E+ CGV+   D
Sbjct: 189 PVFVKPARGGSSIGISRV-ADWS-EWDAALSLAREHDSKVIVEAEIVGVEVECGVLERID 246

Query: 185 ASL------DVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
            SL       + +       FY ++ KY     T  +PA    +    +Q L+  A  A+
Sbjct: 247 GSLMASVPAQLQDTDEGDEGFYGFDTKYLDDVVTAHIPAPFDAETTALIQELSLKAFTAL 306

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            CRG++R DF            EIN  PG TP+S++P++    G  + +LL  ++E A
Sbjct: 307 SCRGLARVDFFV--TDHGPVLNEINTMPGFTPISMYPQVFEATGIGYAQLLDNLIEQA 362


>gi|27381549|ref|NP_773078.1| D-alanine--D-alanine ligase A [Bradyrhizobium japonicum USDA 110]
 gi|39931119|sp|Q89GA7|DDLA_BRAJA RecName: Full=D-alanine--D-alanine ligase A; AltName:
           Full=D-Ala-D-Ala ligase A; AltName: Full=D-alanylalanine
           synthase A
 gi|27354717|dbj|BAC51703.1| D-alanine--D-alanine ligase A [Bradyrhizobium japonicum USDA 110]
          Length = 373

 Score =  135 bits (340), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 107/349 (30%), Positives = 163/349 (46%), Gaps = 59/349 (16%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS--------VGLVLAH------ 48
           VL GG S E EVSL S  +    L+   F+V  + +D++          L  AH      
Sbjct: 9   VLYGGRSGEHEVSLKSAASVFRHLDRTRFEVIPVSIDKTGRWQWNDLRSLDQAHAAALPI 68

Query: 49  ------------------LKP-----------DLAFNVLHGNFGEDGLVQAILELLEIPY 79
                             L P           D+ F V+HG   EDG VQ +LEL ++ Y
Sbjct: 69  LPDAPEMRLARGPDGRGVLVPITQGAAAPIAIDVVFPVIHGPLCEDGTVQGLLELADVAY 128

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--FTMD-------SQHLISPPYVI 130
             SG+LASA+SMDK  +K++    G+PV P  ++ R  F  D       +   +S P  +
Sbjct: 129 VGSGVLASAVSMDKDVAKRLAEFAGIPVAPYRVLTRKAFVQDRVSSLAKAVEGLSLPVFV 188

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD----AS 186
           KP   GSS+GI  +K   ++   L    ++ +  ++L++Q +D  E+   V+ D    AS
Sbjct: 189 KPCNMGSSVGIHKVKTQDALEAAL--DDAFRYDVKVLVQQGIDAREIEVAVLEDETLFAS 246

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
           L          +FYSYE KY   +   V LPA++     + V+ LA     A+ C G +R
Sbjct: 247 LASELNPNAHHEFYSYEAKYLDPDGARVDLPARLDAAQMERVRSLATRVFAALECSGFAR 306

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            DF  D  + +  + EIN  PG T +S++P+M   +G  + ELL  +V+
Sbjct: 307 VDFFLDRKTGEFCFNEINTLPGFTSISMYPKMMEASGVPYGELLSRLVD 355


>gi|331090915|ref|ZP_08339758.1| hypothetical protein HMPREF9477_00401 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330405469|gb|EGG85002.1| hypothetical protein HMPREF9477_00401 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 338

 Score =  135 bits (340), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 95/331 (28%), Positives = 161/331 (48%), Gaps = 47/331 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           +AV+ GG S+E EVSL S  A  + L+   +++  I + R       +            
Sbjct: 4   IAVIFGGCSTEYEVSLQSAYAVLTHLDREKYEIISIGITREGKWFRYYGKEKYISEDTWQ 63

Query: 49  ----------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYT 80
                                       +K D  F VLHG  GEDG +Q ++EL  +P  
Sbjct: 64  EKECNPAWILPDRVEQGILECTKEGNRLIKVDAVFPVLHGKNGEDGTIQGLIELAGLPVI 123

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLG 140
             G L+S+L MDK ++ ++V   G+ V P  +V R    +  L+ P +V KP++ GSS G
Sbjct: 124 GCGTLSSSLCMDKDKAHRLVEKEGIAV-PKAVVLRKGEKADTLVYPVFV-KPVRAGSSFG 181

Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI-AVPKSD- 198
           I  + +++   L+     ++ H D+++IE+ ++G E+ C V+G+  L V  +  +  SD 
Sbjct: 182 ITKVDREED--LEKAVELAFVHDDEVIIEENIEGFEVGCAVLGNDKLIVGRVDEIELSDG 239

Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
           F+ ++ KY+  NS   +PA+I  +I ++++  A   ++ + C+G +R D    P  R VF
Sbjct: 240 FFDFKEKYTLQNSKIHMPARIDGEIEEKIKETAKKIYRTLSCKGFARVDMFLTPDKRIVF 299

Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
             E+N  PG T  S +P M       F ++L
Sbjct: 300 -NEVNTIPGFTSHSRYPNMMKGIDMLFEDVL 329


>gi|26246382|ref|NP_752421.1| D-alanyl-alanine synthetase A [Escherichia coli CFT073]
 gi|91209444|ref|YP_539430.1| D-alanyl-alanine synthetase A [Escherichia coli UTI89]
 gi|110640642|ref|YP_668370.1| D-alanyl-alanine synthetase A [Escherichia coli 536]
 gi|117622644|ref|YP_851557.1| D-alanyl-alanine synthetase A [Escherichia coli APEC O1]
 gi|191173486|ref|ZP_03035013.1| D-alanine--D-alanine ligase A [Escherichia coli F11]
 gi|218557291|ref|YP_002390204.1| D-alanyl-alanine synthetase A [Escherichia coli S88]
 gi|227884616|ref|ZP_04002421.1| D-alanyl-alanine synthetase A [Escherichia coli 83972]
 gi|237707631|ref|ZP_04538112.1| D-alanyl-alanine synthetase A [Escherichia sp. 3_2_53FAA]
 gi|300988123|ref|ZP_07178560.1| D-ala D-ala ligase [Escherichia coli MS 45-1]
 gi|300997436|ref|ZP_07181776.1| D-ala D-ala ligase [Escherichia coli MS 200-1]
 gi|301049572|ref|ZP_07196526.1| D-ala D-ala ligase [Escherichia coli MS 185-1]
 gi|306813154|ref|ZP_07447347.1| D-alanyl-alanine synthetase A [Escherichia coli NC101]
 gi|331645551|ref|ZP_08346655.1| D-alanine--D-alanine ligase A (D-alanylalanine synthetaseA)
           (D-Ala-D-Ala ligase A) [Escherichia coli M605]
 gi|331656432|ref|ZP_08357394.1| D-alanine--D-alanine ligase A (D-alanylalanine synthetaseA)
           (D-Ala-D-Ala ligase A) [Escherichia coli TA206]
 gi|29336710|sp|Q8FKE3|DDLA_ECOL6 RecName: Full=D-alanine--D-alanine ligase A; AltName:
           Full=D-Ala-D-Ala ligase A; AltName: Full=D-alanylalanine
           synthetase A
 gi|26106780|gb|AAN78965.1|AE016756_148 D-alanine--D-alanine ligase A [Escherichia coli CFT073]
 gi|91071018|gb|ABE05899.1| D-alanine--D-alanine ligase A [Escherichia coli UTI89]
 gi|110342234|gb|ABG68471.1| D-alanine-D-alanine ligase A [Escherichia coli 536]
 gi|115511768|gb|ABI99842.1| D-alanine-D-alanine ligase A [Escherichia coli APEC O1]
 gi|190906195|gb|EDV65807.1| D-alanine--D-alanine ligase A [Escherichia coli F11]
 gi|218364060|emb|CAR01725.1| D-alanine-D-alanine ligase A [Escherichia coli S88]
 gi|222032177|emb|CAP74916.1| D-alanine--D-alanine ligase A [Escherichia coli LF82]
 gi|226898841|gb|EEH85100.1| D-alanyl-alanine synthetase A [Escherichia sp. 3_2_53FAA]
 gi|227838702|gb|EEJ49168.1| D-alanyl-alanine synthetase A [Escherichia coli 83972]
 gi|294492292|gb|ADE91048.1| D-alanine--D-alanine ligase A [Escherichia coli IHE3034]
 gi|300298663|gb|EFJ55048.1| D-ala D-ala ligase [Escherichia coli MS 185-1]
 gi|300304255|gb|EFJ58775.1| D-ala D-ala ligase [Escherichia coli MS 200-1]
 gi|300407537|gb|EFJ91075.1| D-ala D-ala ligase [Escherichia coli MS 45-1]
 gi|305853917|gb|EFM54356.1| D-alanyl-alanine synthetase A [Escherichia coli NC101]
 gi|307552286|gb|ADN45061.1| D-alanine--D-alanine ligase A [Escherichia coli ABU 83972]
 gi|307628153|gb|ADN72457.1| D-alanyl-alanine synthetase A [Escherichia coli UM146]
 gi|312944958|gb|ADR25785.1| D-alanyl-alanine synthetase A [Escherichia coli O83:H1 str. NRG
           857C]
 gi|315289818|gb|EFU49208.1| D-ala D-ala ligase [Escherichia coli MS 110-3]
 gi|315294151|gb|EFU53502.1| D-ala D-ala ligase [Escherichia coli MS 153-1]
 gi|315299609|gb|EFU58857.1| D-ala D-ala ligase [Escherichia coli MS 16-3]
 gi|320197185|gb|EFW71802.1| D-alanine--D-alanine ligase [Escherichia coli WV_060327]
 gi|323191488|gb|EFZ76750.1| D-alanine--D-alanine ligase [Escherichia coli RN587/1]
 gi|323953007|gb|EGB48875.1| D-alanine-D-alanine ligase [Escherichia coli H252]
 gi|323958573|gb|EGB54276.1| D-alanine-D-alanine ligase [Escherichia coli H263]
 gi|324010139|gb|EGB79358.1| D-ala D-ala ligase [Escherichia coli MS 57-2]
 gi|324010730|gb|EGB79949.1| D-ala D-ala ligase [Escherichia coli MS 60-1]
 gi|330910172|gb|EGH38682.1| D-alanine--D-alanine ligase [Escherichia coli AA86]
 gi|331045713|gb|EGI17839.1| D-alanine--D-alanine ligase A (D-alanylalanine synthetaseA)
           (D-Ala-D-Ala ligase A) [Escherichia coli M605]
 gi|331054680|gb|EGI26689.1| D-alanine--D-alanine ligase A (D-alanylalanine synthetaseA)
           (D-Ala-D-Ala ligase A) [Escherichia coli TA206]
          Length = 364

 Score =  135 bits (340), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 95/349 (27%), Positives = 172/349 (49%), Gaps = 61/349 (17%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR--------SVGLVL-----A 47
           + ++ GG S+E EVSL S K    A++ + F V  + +D+        +   +L     A
Sbjct: 6   VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPA 65

Query: 48  H--LKP----------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
           H  L+P                            D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  HIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS---------PPY 128
           P+  S +LASA  MDK  +K+++   G+ + P I + R    ++H IS          P 
Sbjct: 126 PFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRA---NRHNISFAEVESKLGLPL 182

Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD 188
            +KP   GSS+G+  +  ++   + +  +  ++H  ++++EQ + G E+ C V+G+ +  
Sbjct: 183 FVKPANQGSSVGVSKVTSEEQYTIAVDLAFEFDH--KVIVEQGIKGREIECAVLGNDNPQ 240

Query: 189 VTEIA--VPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
            +     V  SDFY+Y+ KY   +    V+PA I  +I  +++ +A  A+Q +GC G++R
Sbjct: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            D    P   +V   EIN  PG T +S++P++   +G  + +L+  ++E
Sbjct: 301 VDVFLTP-ENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIE 348


>gi|238853210|ref|ZP_04643596.1| D-alanine--D-alanine ligase [Lactobacillus gasseri 202-4]
 gi|282852441|ref|ZP_06261783.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus gasseri
           224-1]
 gi|311111376|ref|ZP_07712773.1| D-alanine--D-alanine ligase [Lactobacillus gasseri MV-22]
 gi|190359189|sp|Q046V3|DDL_LACGA RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|238834185|gb|EEQ26436.1| D-alanine--D-alanine ligase [Lactobacillus gasseri 202-4]
 gi|282556183|gb|EFB61803.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus gasseri
           224-1]
 gi|311066530|gb|EFQ46870.1| D-alanine--D-alanine ligase [Lactobacillus gasseri MV-22]
          Length = 361

 Score =  135 bits (340), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 81/261 (31%), Positives = 140/261 (53%), Gaps = 19/261 (7%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+ F ++HGN GEDG +Q +  +L+ P+    +LA+A++MDK  +K +    GVPV   I
Sbjct: 89  DVFFPIVHGNLGEDGCLQGLFRVLDKPFVGDDVLAAAVTMDKEMTKILAQRAGVPVAKWI 148

Query: 112 LVNRFTMD--SQHLISPPYV---------IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160
            V RF  +    + +   YV         +KP   GSS+G+  +  ++   + L  + ++
Sbjct: 149 AVKRFEYNDPDNNKLDYEYVASQLGSDLFVKPSNQGSSVGVSHVTNEKEYKVAL--AEAF 206

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDAS---LDVTEIAVPKSDFYSYELKYSSLNSTHVL-- 215
            + D++L+E+ V G E+   V+G+       V +I   K  FY+YE KY   NST  L  
Sbjct: 207 KYDDKVLVEETVHGTEVETAVLGNDKPIVAGVGQIINAKDSFYTYENKYDD-NSTSTLEI 265

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275
           PAK+P  I ++V++ A    QA  C G++R D +     ++V   E+N  PG T +S++P
Sbjct: 266 PAKLPEGIVEKVRKNALKVFQATECSGLARIDSMLRTEDKEVVLTEVNALPGFTNISMYP 325

Query: 276 EMAAYAGYSFRELLLWMVEDA 296
           ++    G  + +L+  +++ A
Sbjct: 326 KLFEEVGIPYTDLITKLIDYA 346


>gi|23098761|ref|NP_692227.1| D-alanyl-alanine synthetase A [Oceanobacillus iheyensis HTE831]
 gi|39930897|sp|Q8ERJ6|DDL_OCEIH RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|22776988|dbj|BAC13262.1| D-alanine-D-alanine ligase A [Oceanobacillus iheyensis HTE831]
          Length = 366

 Score =  135 bits (340), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 80/253 (31%), Positives = 137/253 (54%), Gaps = 14/253 (5%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+ F ++HG  GEDG +Q +L +  IP+  S +L SA+SMDK  +K+++   G+ V    
Sbjct: 99  DVIFPIVHGTLGEDGSLQGMLRMANIPFVGSSVLGSAISMDKDIAKRLLKDAGLKVAKGY 158

Query: 112 LVNRFTMDSQHL------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
                  +S H       +  P  IKP   GSS+G+  ++ ++     +  +  ++H  +
Sbjct: 159 AYRSVDKESIHFDSLKEELGLPMFIKPANQGSSVGVHKVENEEQFYSAIKDAFQFDH--K 216

Query: 166 LLIEQYVDGIELTCGVMGDA--SLDVTEIAVPKSDFYSYELKY-SSLNSTHVLPAKIPLD 222
           LL+E+ + G E+ C V+G+   +  V    +P  DFYSYE KY     +   +PAK+   
Sbjct: 217 LLVEEAIVGREIECAVLGNEKPAASVPGEILPTGDFYSYEAKYIDETGAVLQIPAKLEEP 276

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSD-FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYA 281
           +   +Q +A  A +A+ C G++R D FL D    ++   EIN  PG T +S++P++   +
Sbjct: 277 VVDSIQDIALQAFKALNCEGLARVDVFLTD--DNEIVINEINTLPGFTKISMYPKLWEES 334

Query: 282 GYSFRELLLWMVE 294
           G S+REL+  ++E
Sbjct: 335 GVSYRELIENLIE 347


>gi|15800107|ref|NP_286119.1| D-alanyl-alanine synthetase A [Escherichia coli O157:H7 EDL933]
 gi|15829685|ref|NP_308458.1| D-alanyl-alanine synthetase A [Escherichia coli O157:H7 str. Sakai]
 gi|16128366|ref|NP_414915.1| D-alanine-D-alanine ligase A [Escherichia coli str. K-12 substr.
           MG1655]
 gi|24111677|ref|NP_706187.1| D-alanyl-alanine synthetase A [Shigella flexneri 2a str. 301]
 gi|30061806|ref|NP_835977.1| D-alanyl-alanine synthetase A [Shigella flexneri 2a str. 2457T]
 gi|89107252|ref|AP_001032.1| D-alanine-D-alanine ligase A [Escherichia coli str. K-12 substr.
           W3110]
 gi|157155036|ref|YP_001461557.1| D-alanyl-alanine synthetase A [Escherichia coli E24377A]
 gi|157159898|ref|YP_001457216.1| D-alanyl-alanine synthetase A [Escherichia coli HS]
 gi|168749828|ref|ZP_02774850.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str.
           EC4113]
 gi|168756907|ref|ZP_02781914.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str.
           EC4401]
 gi|168761571|ref|ZP_02786578.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str.
           EC4501]
 gi|168768316|ref|ZP_02793323.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str.
           EC4486]
 gi|168776329|ref|ZP_02801336.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str.
           EC4196]
 gi|168783231|ref|ZP_02808238.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str.
           EC4076]
 gi|168800248|ref|ZP_02825255.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str. EC508]
 gi|170021246|ref|YP_001726200.1| D-alanyl-alanine synthetase A [Escherichia coli ATCC 8739]
 gi|170079968|ref|YP_001729288.1| D-alanine-D-alanine ligase A [Escherichia coli str. K-12 substr.
           DH10B]
 gi|170684315|ref|YP_001742513.1| D-alanyl-alanine synthetase A [Escherichia coli SMS-3-5]
 gi|191166736|ref|ZP_03028563.1| D-alanine--D-alanine ligase A [Escherichia coli B7A]
 gi|193065214|ref|ZP_03046287.1| D-alanine--D-alanine ligase A [Escherichia coli E22]
 gi|193068673|ref|ZP_03049634.1| D-alanine--D-alanine ligase A [Escherichia coli E110019]
 gi|194428839|ref|ZP_03061374.1| D-alanine--D-alanine ligase A [Escherichia coli B171]
 gi|194438869|ref|ZP_03070954.1| D-alanine--D-alanine ligase A [Escherichia coli 101-1]
 gi|195938560|ref|ZP_03083942.1| D-alanyl-alanine synthetase A [Escherichia coli O157:H7 str.
           EC4024]
 gi|208808983|ref|ZP_03251320.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str.
           EC4206]
 gi|208815537|ref|ZP_03256716.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str.
           EC4045]
 gi|208822855|ref|ZP_03263173.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str.
           EC4042]
 gi|209399711|ref|YP_002269017.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str.
           EC4115]
 gi|209917592|ref|YP_002291676.1| D-alanyl-alanine synthetase A [Escherichia coli SE11]
 gi|215485463|ref|YP_002327894.1| D-alanyl-alanine synthetase A [Escherichia coli O127:H6 str.
           E2348/69]
 gi|217326355|ref|ZP_03442439.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str.
           TW14588]
 gi|218552941|ref|YP_002385854.1| D-alanyl-alanine synthetase A [Escherichia coli IAI1]
 gi|218693840|ref|YP_002401507.1| D-alanyl-alanine synthetase A [Escherichia coli 55989]
 gi|218698715|ref|YP_002406344.1| D-alanyl-alanine synthetase A [Escherichia coli IAI39]
 gi|238899671|ref|YP_002925467.1| D-alanine-D-alanine ligase A [Escherichia coli BW2952]
 gi|253774637|ref|YP_003037468.1| D-alanyl-alanine synthetase A [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254160447|ref|YP_003043555.1| D-alanyl-alanine synthetase A [Escherichia coli B str. REL606]
 gi|254791557|ref|YP_003076394.1| D-alanyl-alanine synthetase A [Escherichia coli O157:H7 str.
           TW14359]
 gi|256024002|ref|ZP_05437867.1| D-alanyl-alanine synthetase A [Escherichia sp. 4_1_40B]
 gi|260842581|ref|YP_003220359.1| D-alanine-D-alanine ligase A [Escherichia coli O103:H2 str. 12009]
 gi|260853603|ref|YP_003227494.1| D-alanine-D-alanine ligase A [Escherichia coli O26:H11 str. 11368]
 gi|260866542|ref|YP_003232944.1| D-alanine-D-alanine ligase A [Escherichia coli O111:H- str. 11128]
 gi|293408524|ref|ZP_06652363.1| D-alanine-D-alanine ligase A [Escherichia coli B354]
 gi|293413632|ref|ZP_06656281.1| D-alanine-D-alanine ligase [Escherichia coli B185]
 gi|293418448|ref|ZP_06660883.1| D-alanine-D-alanine ligase [Escherichia coli B088]
 gi|297517452|ref|ZP_06935838.1| D-alanyl-alanine synthetase A [Escherichia coli OP50]
 gi|300818299|ref|ZP_07098510.1| D-ala D-ala ligase [Escherichia coli MS 107-1]
 gi|300820384|ref|ZP_07100536.1| D-ala D-ala ligase [Escherichia coli MS 119-7]
 gi|300903359|ref|ZP_07121287.1| D-ala D-ala ligase [Escherichia coli MS 84-1]
 gi|300930329|ref|ZP_07145741.1| D-ala D-ala ligase [Escherichia coli MS 187-1]
 gi|300936362|ref|ZP_07151290.1| D-ala D-ala ligase [Escherichia coli MS 21-1]
 gi|300947975|ref|ZP_07162120.1| D-ala D-ala ligase [Escherichia coli MS 116-1]
 gi|300957935|ref|ZP_07170104.1| D-ala D-ala ligase [Escherichia coli MS 175-1]
 gi|301025474|ref|ZP_07189021.1| D-ala D-ala ligase [Escherichia coli MS 69-1]
 gi|301025803|ref|ZP_07189310.1| D-ala D-ala ligase [Escherichia coli MS 196-1]
 gi|301301524|ref|ZP_07207659.1| D-ala D-ala ligase [Escherichia coli MS 124-1]
 gi|301647295|ref|ZP_07247111.1| D-ala D-ala ligase [Escherichia coli MS 146-1]
 gi|307137022|ref|ZP_07496378.1| D-alanyl-alanine synthetase A [Escherichia coli H736]
 gi|309794898|ref|ZP_07689319.1| D-ala D-ala ligase [Escherichia coli MS 145-7]
 gi|312964607|ref|ZP_07778858.1| D-alanine--D-alanine ligase [Escherichia coli 2362-75]
 gi|312970473|ref|ZP_07784654.1| D-alanine--D-alanine ligase [Escherichia coli 1827-70]
 gi|331640894|ref|ZP_08342029.1| D-alanine--D-alanine ligase A (D-alanylalanine synthetaseA)
           (D-Ala-D-Ala ligase A) [Escherichia coli H736]
 gi|331676046|ref|ZP_08376758.1| D-alanine--D-alanine ligase A (D-alanylalanine synthetaseA)
           (D-Ala-D-Ala ligase A) [Escherichia coli H591]
 gi|331681772|ref|ZP_08382405.1| D-alanine--D-alanine ligase A (D-alanylalanine synthetaseA)
           (D-Ala-D-Ala ligase A) [Escherichia coli H299]
 gi|62288066|sp|P0A6J8|DDLA_ECOLI RecName: Full=D-alanine--D-alanine ligase A; AltName:
           Full=D-Ala-D-Ala ligase A; AltName: Full=D-alanylalanine
           synthetase A
 gi|62288067|sp|P0A6J9|DDLA_ECO57 RecName: Full=D-alanine--D-alanine ligase A; AltName:
           Full=D-Ala-D-Ala ligase A; AltName: Full=D-alanylalanine
           synthetase A
 gi|62288068|sp|P0A6K0|DDLA_SHIFL RecName: Full=D-alanine--D-alanine ligase A; AltName:
           Full=D-Ala-D-Ala ligase A; AltName: Full=D-alanylalanine
           synthetase A
 gi|12513221|gb|AAG54727.1|AE005217_5 hypothetical protein Z0477 [Escherichia coli O157:H7 str. EDL933]
 gi|145722|gb|AAA23671.1| D-alanine:D-alanine ligase A [Escherichia coli str. K-12 substr.
           W3110]
 gi|1657576|gb|AAB18104.1| D-alanine--D-alanine ligase A [Escherichia coli str. K-12 substr.
           MG1655]
 gi|1786579|gb|AAC73484.1| D-alanine-D-alanine ligase A [Escherichia coli str. K-12 substr.
           MG1655]
 gi|13359888|dbj|BAB33854.1| D-alanine-D-alanine ligase A [Escherichia coli O157:H7 str. Sakai]
 gi|24050453|gb|AAN41894.1| D-alanine-D-alanine ligase A [Shigella flexneri 2a str. 301]
 gi|30040048|gb|AAP15782.1| D-alanine-D-alanine ligase A [Shigella flexneri 2a str. 2457T]
 gi|85674522|dbj|BAE76162.1| D-alanine-D-alanine ligase A [Escherichia coli str. K12 substr.
           W3110]
 gi|157065578|gb|ABV04833.1| D-alanine--D-alanine ligase A [Escherichia coli HS]
 gi|157077066|gb|ABV16774.1| D-alanine--D-alanine ligase A [Escherichia coli E24377A]
 gi|169756174|gb|ACA78873.1| D-alanine--D-alanine ligase [Escherichia coli ATCC 8739]
 gi|169887803|gb|ACB01510.1| D-alanine-D-alanine ligase A [Escherichia coli str. K-12 substr.
           DH10B]
 gi|170522033|gb|ACB20211.1| D-alanine--D-alanine ligase A [Escherichia coli SMS-3-5]
 gi|187768284|gb|EDU32128.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str.
           EC4196]
 gi|188015916|gb|EDU54038.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str.
           EC4113]
 gi|188999359|gb|EDU68345.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str.
           EC4076]
 gi|189355976|gb|EDU74395.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str.
           EC4401]
 gi|189362532|gb|EDU80951.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str.
           EC4486]
 gi|189368055|gb|EDU86471.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str.
           EC4501]
 gi|189377439|gb|EDU95855.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str. EC508]
 gi|190903247|gb|EDV62969.1| D-alanine--D-alanine ligase A [Escherichia coli B7A]
 gi|192927188|gb|EDV81809.1| D-alanine--D-alanine ligase A [Escherichia coli E22]
 gi|192958036|gb|EDV88478.1| D-alanine--D-alanine ligase A [Escherichia coli E110019]
 gi|194413142|gb|EDX29429.1| D-alanine--D-alanine ligase A [Escherichia coli B171]
 gi|194422163|gb|EDX38165.1| D-alanine--D-alanine ligase A [Escherichia coli 101-1]
 gi|208728784|gb|EDZ78385.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str.
           EC4206]
 gi|208732185|gb|EDZ80873.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str.
           EC4045]
 gi|208737048|gb|EDZ84732.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str.
           EC4042]
 gi|209161111|gb|ACI38544.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str.
           EC4115]
 gi|209744404|gb|ACI70509.1| D-alanine-D-alanine ligase A [Escherichia coli]
 gi|209744406|gb|ACI70510.1| D-alanine-D-alanine ligase A [Escherichia coli]
 gi|209744408|gb|ACI70511.1| D-alanine-D-alanine ligase A [Escherichia coli]
 gi|209744412|gb|ACI70513.1| D-alanine-D-alanine ligase A [Escherichia coli]
 gi|209910851|dbj|BAG75925.1| D-alanine-D-alanine ligase [Escherichia coli SE11]
 gi|215263535|emb|CAS07865.1| D-alanine-D-alanine ligase A [Escherichia coli O127:H6 str.
           E2348/69]
 gi|217322576|gb|EEC31000.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str.
           TW14588]
 gi|218350572|emb|CAU96260.1| D-alanine-D-alanine ligase A [Escherichia coli 55989]
 gi|218359709|emb|CAQ97250.1| D-alanine-D-alanine ligase A [Escherichia coli IAI1]
 gi|218368701|emb|CAR16441.1| D-alanine-D-alanine ligase A [Escherichia coli IAI39]
 gi|238860727|gb|ACR62725.1| D-alanine-D-alanine ligase A [Escherichia coli BW2952]
 gi|253325681|gb|ACT30283.1| D-alanine/D-alanine ligase [Escherichia coli 'BL21-Gold(DE3)pLysS
           AG']
 gi|253972348|gb|ACT38019.1| D-alanylalanine synthetase [Escherichia coli B str. REL606]
 gi|253976557|gb|ACT42227.1| D-alanylalanine synthetase [Escherichia coli BL21(DE3)]
 gi|254590957|gb|ACT70318.1| D-alanine-D-alanine ligase A [Escherichia coli O157:H7 str.
           TW14359]
 gi|257752252|dbj|BAI23754.1| D-alanine-D-alanine ligase A [Escherichia coli O26:H11 str. 11368]
 gi|257757728|dbj|BAI29225.1| D-alanine-D-alanine ligase A [Escherichia coli O103:H2 str. 12009]
 gi|257762898|dbj|BAI34393.1| D-alanine-D-alanine ligase A [Escherichia coli O111:H- str. 11128]
 gi|260450431|gb|ACX40853.1| D-alanine/D-alanine ligase [Escherichia coli DH1]
 gi|281599594|gb|ADA72578.1| D-alanine--D-alanine ligase A [Shigella flexneri 2002017]
 gi|284920187|emb|CBG33246.1| D-alanine:D-alanine ligase A [Escherichia coli 042]
 gi|291324976|gb|EFE64391.1| D-alanine-D-alanine ligase [Escherichia coli B088]
 gi|291433690|gb|EFF06663.1| D-alanine-D-alanine ligase [Escherichia coli B185]
 gi|291471702|gb|EFF14185.1| D-alanine-D-alanine ligase A [Escherichia coli B354]
 gi|299879945|gb|EFI88156.1| D-ala D-ala ligase [Escherichia coli MS 196-1]
 gi|300315374|gb|EFJ65158.1| D-ala D-ala ligase [Escherichia coli MS 175-1]
 gi|300395989|gb|EFJ79527.1| D-ala D-ala ligase [Escherichia coli MS 69-1]
 gi|300404654|gb|EFJ88192.1| D-ala D-ala ligase [Escherichia coli MS 84-1]
 gi|300452474|gb|EFK16094.1| D-ala D-ala ligase [Escherichia coli MS 116-1]
 gi|300458468|gb|EFK21961.1| D-ala D-ala ligase [Escherichia coli MS 21-1]
 gi|300461789|gb|EFK25282.1| D-ala D-ala ligase [Escherichia coli MS 187-1]
 gi|300527169|gb|EFK48238.1| D-ala D-ala ligase [Escherichia coli MS 119-7]
 gi|300529190|gb|EFK50252.1| D-ala D-ala ligase [Escherichia coli MS 107-1]
 gi|300843021|gb|EFK70781.1| D-ala D-ala ligase [Escherichia coli MS 124-1]
 gi|301074559|gb|EFK89365.1| D-ala D-ala ligase [Escherichia coli MS 146-1]
 gi|308121551|gb|EFO58813.1| D-ala D-ala ligase [Escherichia coli MS 145-7]
 gi|309700643|emb|CBI99939.1| D-alanine:D-alanine ligase A [Escherichia coli ETEC H10407]
 gi|310337122|gb|EFQ02260.1| D-alanine--D-alanine ligase [Escherichia coli 1827-70]
 gi|312290628|gb|EFR18506.1| D-alanine--D-alanine ligase [Escherichia coli 2362-75]
 gi|313646690|gb|EFS11149.1| D-alanine--D-alanine ligase [Shigella flexneri 2a str. 2457T]
 gi|313848548|emb|CAQ30849.2| D-alanine-D-alanine ligase A [Escherichia coli BL21(DE3)]
 gi|315135064|dbj|BAJ42223.1| D-alanyl-alanine synthetase A [Escherichia coli DH1]
 gi|315256200|gb|EFU36168.1| D-ala D-ala ligase [Escherichia coli MS 85-1]
 gi|315616714|gb|EFU97331.1| D-alanine--D-alanine ligase [Escherichia coli 3431]
 gi|320181640|gb|EFW56555.1| D-alanine--D-alanine ligase [Shigella boydii ATCC 9905]
 gi|320192788|gb|EFW67428.1| D-alanine--D-alanine ligase [Escherichia coli O157:H7 str. EC1212]
 gi|320638368|gb|EFX08082.1| D-alanyl-alanine synthetase A [Escherichia coli O157:H7 str. G5101]
 gi|320643749|gb|EFX12872.1| D-alanyl-alanine synthetase A [Escherichia coli O157:H- str.
           493-89]
 gi|320649099|gb|EFX17677.1| D-alanyl-alanine synthetase A [Escherichia coli O157:H- str. H
           2687]
 gi|320655992|gb|EFX23908.1| D-alanyl-alanine synthetase A [Escherichia coli O55:H7 str. 3256-97
           TW 07815]
 gi|320662549|gb|EFX29938.1| D-alanyl-alanine synthetase A [Escherichia coli O55:H7 str. USDA
           5905]
 gi|320665119|gb|EFX32212.1| D-alanyl-alanine synthetase A [Escherichia coli O157:H7 str.
           LSU-61]
 gi|323152152|gb|EFZ38445.1| D-alanine--D-alanine ligase [Escherichia coli EPECa14]
 gi|323160514|gb|EFZ46462.1| D-alanine--D-alanine ligase [Escherichia coli E128010]
 gi|323164166|gb|EFZ49973.1| D-alanine--D-alanine ligase [Shigella sonnei 53G]
 gi|323178359|gb|EFZ63937.1| D-alanine--D-alanine ligase [Escherichia coli 1180]
 gi|323184795|gb|EFZ70166.1| D-alanine--D-alanine ligase [Escherichia coli 1357]
 gi|323938565|gb|EGB34814.1| D-alanine-D-alanine ligase [Escherichia coli E1520]
 gi|323943187|gb|EGB39343.1| D-alanine-D-alanine ligase [Escherichia coli E482]
 gi|323945367|gb|EGB41422.1| D-alanine-D-alanine ligase [Escherichia coli H120]
 gi|323963366|gb|EGB58928.1| D-alanine-D-alanine ligase [Escherichia coli H489]
 gi|323972229|gb|EGB67439.1| D-alanine-D-alanine ligase [Escherichia coli TA007]
 gi|324016623|gb|EGB85842.1| D-ala D-ala ligase [Escherichia coli MS 117-3]
 gi|324116864|gb|EGC10777.1| D-alanine-D-alanine ligase [Escherichia coli E1167]
 gi|326341135|gb|EGD64927.1| D-alanine--D-alanine ligase [Escherichia coli O157:H7 str. 1044]
 gi|326346089|gb|EGD69828.1| D-alanine--D-alanine ligase [Escherichia coli O157:H7 str. 1125]
 gi|331037692|gb|EGI09912.1| D-alanine--D-alanine ligase A (D-alanylalanine synthetaseA)
           (D-Ala-D-Ala ligase A) [Escherichia coli H736]
 gi|331076104|gb|EGI47386.1| D-alanine--D-alanine ligase A (D-alanylalanine synthetaseA)
           (D-Ala-D-Ala ligase A) [Escherichia coli H591]
 gi|331080974|gb|EGI52139.1| D-alanine--D-alanine ligase A (D-alanylalanine synthetaseA)
           (D-Ala-D-Ala ligase A) [Escherichia coli H299]
 gi|332341742|gb|AEE55076.1| D-alanine-D-alanine ligase A DdlA [Escherichia coli UMNK88]
 gi|332758117|gb|EGJ88442.1| D-alanine--D-alanine ligase [Shigella flexneri 2747-71]
 gi|332761807|gb|EGJ92084.1| D-alanine--D-alanine ligase [Shigella flexneri 4343-70]
 gi|332764672|gb|EGJ94902.1| D-alanine--D-alanine ligase [Shigella flexneri K-671]
 gi|332768638|gb|EGJ98819.1| D-alanine-D-alanine ligase A [Shigella flexneri 2930-71]
 gi|333003877|gb|EGK23412.1| D-alanine--D-alanine ligase [Shigella flexneri K-218]
 gi|333010817|gb|EGK30243.1| D-alanine--D-alanine ligase [Shigella flexneri K-272]
 gi|333021315|gb|EGK40568.1| D-alanine--D-alanine ligase [Shigella flexneri K-227]
 gi|333022055|gb|EGK41300.1| D-alanine--D-alanine ligase [Shigella flexneri K-304]
          Length = 364

 Score =  135 bits (340), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 95/349 (27%), Positives = 172/349 (49%), Gaps = 61/349 (17%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR--------SVGLVL-----A 47
           + ++ GG S+E EVSL S K    A++ + F V  + +D+        +   +L     A
Sbjct: 6   VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPA 65

Query: 48  H--LKP----------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
           H  L+P                            D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  HIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS---------PPY 128
           P+  S +LASA  MDK  +K+++   G+ + P I + R    ++H IS          P 
Sbjct: 126 PFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRA---NRHNISFAEVESKLGLPL 182

Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD 188
            +KP   GSS+G+  +  ++   + +  +  ++H  ++++EQ + G E+ C V+G+ +  
Sbjct: 183 FVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDH--KVIVEQGIKGREIECAVLGNDNPQ 240

Query: 189 VTEIA--VPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
            +     V  SDFY+Y+ KY   +    V+PA I  +I  +++ +A  A+Q +GC G++R
Sbjct: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            D    P   +V   EIN  PG T +S++P++   +G  + +L+  ++E
Sbjct: 301 VDVFLTP-ENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIE 348


>gi|161504434|ref|YP_001571546.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. arizonae
           serovar 62:z4,z23:-- str. RSK2980]
 gi|160865781|gb|ABX22404.1| hypothetical protein SARI_02546 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 370

 Score =  135 bits (340), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 91/346 (26%), Positives = 167/346 (48%), Gaps = 55/346 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------A 47
           + ++ GG S+E EVSL S K    A++   F V  + +D++    +             A
Sbjct: 12  VGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGIDKAGQWHVNDAENYLQNADDPA 71

Query: 48  H--LKP----------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
           H  L+P                            D+ F ++HG  GEDG +Q +L +  +
Sbjct: 72  HIALRPSAISLAQVPGKHEQQLINAQNGQPLPTIDVIFPIVHGTLGEDGSLQGMLRVANL 131

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVIK 131
           P+  S +L+SA  MDK  +K+++   G+ + P I + R    +      +  +  P  +K
Sbjct: 132 PFVGSDVLSSAACMDKDVAKRLLRDAGLNIAPFITLTRANRHAFSFAEMESRLGLPLFVK 191

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  +  +      +  +  ++H  ++++EQ + G E+ C V+G+ S   + 
Sbjct: 192 PANQGSSVGVSKVANEAQYLQAVALAFEFDH--KVVVEQGIKGREIECAVLGNDSPQAST 249

Query: 192 IA--VPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               V  S+FY+Y+ KY   N    V+PA+IP  +  +++ +A  A+Q +GC G++R D 
Sbjct: 250 CGEIVLNSEFYAYDTKYIDDNGAQVVVPAQIPSGVNDKIRAIAIQAYQTLGCAGMARVDV 309

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
              P   +V   EIN  PG T +S++P++   +G  + +L+  ++E
Sbjct: 310 FLTP-ENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLISRLIE 354


>gi|29829221|ref|NP_823855.1| D-alanyl-alanine synthetase A [Streptomyces avermitilis MA-4680]
 gi|39930866|sp|Q82JS5|DDL_STRAW RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|29606327|dbj|BAC70390.1| putative D-alanine-D-alanine ligase [Streptomyces avermitilis
           MA-4680]
          Length = 385

 Score =  135 bits (340), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 91/263 (34%), Positives = 141/263 (53%), Gaps = 23/263 (8%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+ F VLHG +GEDG +Q +LEL  +PY  +G+LASA+  DK   K+V +S G+ V P +
Sbjct: 120 DVVFPVLHGPYGEDGTLQGLLELSGVPYVGAGVLASAVGQDKEYMKRVFTSFGLKVGPYV 179

Query: 112 LV------------NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
           ++             R  +D       P  +KP + GSS+GI   K D    LD   + +
Sbjct: 180 VIRPREWERDESAARRKIVDFAGEHGWPLFVKPARAGSSIGI--TKVDDLAGLDEAVAEA 237

Query: 160 WNHGDQLLIEQYVDGIELTCGVM----GDASLDVTEIAVPKSD-FYSYELKYSSLNST-H 213
             H  ++++E  + G E+ CGV+    G  +    EI   +S  +Y +E KY  ++ST  
Sbjct: 238 QRHDPKIIVEALLRGREIECGVLEFEDGPRASVPAEIPPAQSHAYYDFEAKY--IDSTPG 295

Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273
           ++PA +  +   EV+RLA  A +A  C G+ R+DF        V   EIN  PG TP+S+
Sbjct: 296 IVPAPLTPEETAEVRRLAVEAFEATSCEGLVRADFFLTEDGDFVI-NEINTMPGFTPISM 354

Query: 274 FPEMAAYAGYSFRELLLWMVEDA 296
           +P+M   +G ++ EL+  +VE A
Sbjct: 355 YPQMWQASGIAYPELVDRLVEAA 377


>gi|160894445|ref|ZP_02075221.1| hypothetical protein CLOL250_01997 [Clostridium sp. L2-50]
 gi|156863756|gb|EDO57187.1| hypothetical protein CLOL250_01997 [Clostridium sp. L2-50]
          Length = 352

 Score =  135 bits (340), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 100/344 (29%), Positives = 163/344 (47%), Gaps = 52/344 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------------------D 39
           + V+ GG SSE EVS  S +  A A++   + ++ I +                     D
Sbjct: 6   LVVIFGGRSSEHEVSCISVQTVAKAVDTDKYDMTLIGITKDGKWLKADSIESIADGSWYD 65

Query: 40  RSVGLVLA---------------HLKP-DLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
             V  V++               + +P D+ F VLHG +GEDG +Q + E+ +IPY   G
Sbjct: 66  SQVRAVISPDSAKEIIIKDGDRIYAEPVDVIFPVLHGLYGEDGTIQGLFEMADIPYVGCG 125

Query: 84  ILASALSMDKMRSK------QVVSSCGVPVCPSILVN-RFTMDS-QHLISPPYVIKPLKG 135
           + ASA +MDK  +K       V  +  VPV      +    MD  +  ++ P  +KP   
Sbjct: 126 VFASAAAMDKFHTKIIADHINVTQAKFVPVVEDDFDDLDVAMDRVESELNYPVFVKPSSA 185

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG----DASLDVTE 191
           GSS G  V K      L+     + NH  ++L+E+ + G EL CGV+G      +  V E
Sbjct: 186 GSSKG--VTKAHDRAELEAGLHEALNHDSKILVEETIIGRELECGVLGYGNHTKASGVGE 243

Query: 192 I-AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
           I A   +DFY ++ KY++ +S  ++ A IP +   E++  A     AI   G++R DF  
Sbjct: 244 ILAAADADFYDFDAKYNNADSKTIIGADIPEEAEDEIRAEAIRIFNAIDGFGLARVDFFL 303

Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           +  + +V + E+N  PG T +S++P +    GY  + L+  ++E
Sbjct: 304 EKDTNRVIFNEVNTLPGFTSISMYPMLWDAEGYDIKTLVNTLIE 347


>gi|332798369|ref|YP_004459868.1| D-alanine--D-alanine ligase [Tepidanaerobacter sp. Re1]
 gi|332696104|gb|AEE90561.1| D-alanine--D-alanine ligase [Tepidanaerobacter sp. Re1]
          Length = 363

 Score =  135 bits (340), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 79/251 (31%), Positives = 134/251 (53%), Gaps = 16/251 (6%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+ F VLHG  GEDG VQ++ EL+ IPY   G+ +SA+ MDK+ SK+++   G+P+    
Sbjct: 96  DVVFPVLHGPRGEDGTVQSLFELMNIPYVSCGVTSSAICMDKVFSKKILEQSGLPIVDYK 155

Query: 112 LVNRFTM---------DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
              +  +         + +  +  P  +KP   GSS+GI   K      L+     +  +
Sbjct: 156 AFYKRELLARMPEIISEVEEFLGYPCFVKPANLGSSVGI--SKAGGPSELESAMRLATQY 213

Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKY-SSLNSTHVLPAK 218
             ++L+E+++D  E+ C V+G+   + +   EI +P  DFY Y  KY     S  +LPA 
Sbjct: 214 DTKILVERFIDAREIECAVLGNDEPNASLPGEI-IPSRDFYDYTAKYLDGDKSKLLLPAP 272

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278
           +       +Q LA  A + + C G++R DFL   +S  ++  E+N  PG T +S++P+M 
Sbjct: 273 VSRKDITRIQELAIKAFKTLDCSGMARVDFLMSKVSGNIYINELNTIPGFTRISMYPKMW 332

Query: 279 AYAGYSFRELL 289
             +G S+++L+
Sbjct: 333 EISGLSYKDLI 343


>gi|323465695|gb|ADX69382.1| D-alanine--D-alanine ligase [Lactobacillus helveticus H10]
          Length = 360

 Score =  135 bits (340), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 98/341 (28%), Positives = 161/341 (47%), Gaps = 51/341 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-----------------DRSVG 43
           + ++ GG SSE EVS+ SG+    A++   F V  I +                 D S  
Sbjct: 7   VGLIFGGNSSEYEVSIISGRNIYKAIDKEKFDVHPIWITNEGYFANEEESFKVLEDPSYQ 66

Query: 44  LVLAHL--------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
           +   H               + D+ F ++HGN GEDG++Q +  L+  P+    +LA+A+
Sbjct: 67  VKNPHKVHNISNLIELENLPEIDVFFPIVHGNLGEDGVLQGLFRLMNKPFVGDDVLAAAV 126

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPY-----------VIKPLKGGSS 138
           +MDK  +K +    GVPV   I + RF  D ++     Y            +KP   GSS
Sbjct: 127 TMDKEFTKILAQRVGVPVADWIAIKRFEYDDKNNDKLDYEKVAEKLGRDMFVKPSNQGSS 186

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS---LDVTEIAVP 195
           +G+  +         L +  ++ + D++L+E+ V G E+   V+G+       V +I   
Sbjct: 187 VGVSHVTNADEYAAALKE--AFKYDDKVLVEETVPGTEVETAVLGNDKPIVAGVGQITNA 244

Query: 196 KSDFYSYELKYSSLNSTHVL--PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
           K  FYSY+ KY   NST  L  PA +P +I   ++R A   ++   C G++R D +  P 
Sbjct: 245 KGSFYSYKNKYDD-NSTSKLQIPADLPQEIIDTIRRNARKVYEVTECSGMARIDSMLTP- 302

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             KV   E+N  PG T +S++P++   AG  + EL+  ++E
Sbjct: 303 GGKVVLTEVNALPGFTNISMYPKLFEEAGVPYTELITRLIE 343


>gi|226356915|ref|YP_002786655.1| D-alanyl-alanine synthetase A [Deinococcus deserti VCD115]
 gi|226318905|gb|ACO46901.1| putative D-alanine--D-alanine ligase [Deinococcus deserti VCD115]
          Length = 339

 Score =  135 bits (340), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 101/331 (30%), Positives = 165/331 (49%), Gaps = 45/331 (13%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR--------------SVG----- 43
           +L GG S E EVSL S ++  +AL    F V+ + + +                G     
Sbjct: 7   LLAGGQSGEHEVSLMSARSVLAALPRDQFDVTPVVISKQGRWLPPTGTQKALETGEAPGG 66

Query: 44  --LVLAHLKP----DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSK 97
             LVL  +      D  F +LHG  GEDG +Q +L L  IP+  SG+L SA+SMDK+ +K
Sbjct: 67  GDLVLHRVASAEGYDAVFPLLHGPMGEDGTIQGLLTLAGIPFVGSGVLGSAVSMDKVMTK 126

Query: 98  QVVSSCGVPVCPSILVNRFTMDSQHLISP--------PYVIKPLKGGSSLGIIVIKK--D 147
           QV++S G+      L  R    SQ  +          P  +KP   GSS+GI  +    D
Sbjct: 127 QVLASAGIAQVEWRLALRREWRSQPEVVTARATELGFPLFVKPANLGSSVGISKVSHTDD 186

Query: 148 QSIPLDLLQSSSWNHGDQLLIEQYVDGI--ELTCGVMGD---ASLDVTEIAVPKSDFYSY 202
               LDL    +++   ++++E        E+  G++G+    +  V E++   S+FY Y
Sbjct: 187 LQAALDL----AFSLDRRVILEAMTSHKPREVEVGILGNDAPVASPVGELSF-DSEFYDY 241

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
           E KY+   +   +PA++P D+ + V+ +A  A +A+ C G++R DF +   + ++F  E+
Sbjct: 242 ETKYTEGRAQMHIPARMPRDMSERVREMALQAFRALDCAGLARVDFFYVEETGELFLNEV 301

Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           N  PG T  S++P++   AG  + EL+  +V
Sbjct: 302 NTMPGFTTTSMYPKLFEAAGIGYSELVTRLV 332


>gi|134102567|ref|YP_001108228.1| D-alanyl-alanine synthetase A [Saccharopolyspora erythraea NRRL
           2338]
 gi|291007062|ref|ZP_06565035.1| D-alanyl-alanine synthetase A [Saccharopolyspora erythraea NRRL
           2338]
 gi|133915190|emb|CAM05303.1| D-alanylalanine synthetase [Saccharopolyspora erythraea NRRL 2338]
          Length = 362

 Score =  135 bits (340), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 99/299 (33%), Positives = 156/299 (52%), Gaps = 17/299 (5%)

Query: 8   ISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGL 67
           I   R   ++SGKA A    D    +  ++  R  G VL+ +  D+ F VLHG FGEDG 
Sbjct: 63  IQDRRTPEITSGKAVALP-GDPTRDLMYLEPGRG-GEVLSSV--DVVFPVLHGAFGEDGT 118

Query: 68  VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--FTMDSQH--L 123
           +Q +LE+  +PY   G+L+SA++MDK  +K+++++ G+ V    ++ R   T+D Q    
Sbjct: 119 IQGLLEMAGVPYAGPGVLSSAVAMDKEYTKKLLAAEGLAVGTYEVLRRDQSTLDQQQRER 178

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           +  P  +KP + GSSLGI   K      LD   + +     +++IE  V G E+ CGV+ 
Sbjct: 179 LGLPVFVKPARAGSSLGI--TKVTDHADLDDAIAEARRTDPKVIIESAVTGREVECGVLE 236

Query: 184 ------DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
                 +ASL         S +Y YE KY    +   +PAKI  D  + ++  A  A +A
Sbjct: 237 FPDGRVEASLPAELRVTGDSTWYDYESKYLDDVTEFDIPAKIGDDAIERMREAAVTAFRA 296

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           + C+G++R DF F     ++   E+N  PG T +S++P M A  G  +  LL  ++E A
Sbjct: 297 LECQGLARVDF-FVADDGELIVNEVNTMPGFTAISLYPRMWAQTGVDYPTLLSTLIETA 354


>gi|302537152|ref|ZP_07289494.1| D-alanylalanine synthetase [Streptomyces sp. C]
 gi|302446047|gb|EFL17863.1| D-alanylalanine synthetase [Streptomyces sp. C]
          Length = 385

 Score =  135 bits (339), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 88/262 (33%), Positives = 136/262 (51%), Gaps = 21/262 (8%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+ F VLHG +GEDG +Q +LEL  IPY   G+L+SA+  DK   K+V +S G+ V P +
Sbjct: 120 DVVFPVLHGPYGEDGTLQGLLELSGIPYVGCGVLSSAVGQDKDYMKRVFASYGLNVGPYV 179

Query: 112 LVNRFTMDSQHLISP------------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
            +     ++    +             P  +KP + GSS+GI   K D +  LD     +
Sbjct: 180 TIRPREWEADQAAATAKVLDFAGEHGWPLFVKPARAGSSIGI--TKVDDASGLDAAIREA 237

Query: 160 WNHGDQLLIEQYVDGIELTCGVM----GDASLDVTEI-AVPKSDFYSYELKYSSLNSTHV 214
             H  ++++E  + G E+ CGV+    G  +    EI  V   DFY +E KY   ++T +
Sbjct: 238 RRHDPKVIVEALLRGREIECGVLEFEDGPRASAPAEIPPVSSHDFYDFEAKYID-SATGL 296

Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274
           +PA +  +   EVQ+LA  A +A  C G+ R+DF        V   EIN  PG TP+S++
Sbjct: 297 VPAPLTPEQTAEVQKLAIDAFEAASCEGLVRADFFLTEDGTFVI-NEINTMPGFTPISMY 355

Query: 275 PEMAAYAGYSFRELLLWMVEDA 296
           P M   +G  + EL+  +++ A
Sbjct: 356 PRMWQESGIEYPELVDRLIQAA 377


>gi|160888048|ref|ZP_02069051.1| hypothetical protein BACUNI_00456 [Bacteroides uniformis ATCC 8492]
 gi|156862547|gb|EDO55978.1| hypothetical protein BACUNI_00456 [Bacteroides uniformis ATCC 8492]
          Length = 326

 Score =  135 bits (339), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 95/323 (29%), Positives = 159/323 (49%), Gaps = 33/323 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKV-----------------SQIDVDRS-V 42
           +A++ GG +SE  VSL S +   S ++   + +                 ++  VDR+  
Sbjct: 5   IAIVAGGDTSEFHVSLRSAQGIYSFIDKEKYTLYIVEMHGLDWHVQLPDGAKTPVDRNDF 64

Query: 43  GLVLAHLKP--DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
             VL   K   D A+  +HG  GEDG +Q   ++L IPY+  G+LA++L+ DK    Q +
Sbjct: 65  SFVLDGEKVTFDFAYITIHGTPGEDGRLQGYFDMLHIPYSCCGVLAASLTYDKFACNQYL 124

Query: 101 SSCGVPVCPSILVNR----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
              GV +  S+L+         D    I  P  IKP  GGSS G+  +   + I   +  
Sbjct: 125 KGFGVRIAESLLLRGGQSVTDEDVMEKIGLPCFIKPSLGGSSFGVTKVTAKEQIQPAI-- 182

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGV--MGDAS--LDVTEIAVPKSDFYSYELKYSSLNST 212
           + ++    ++L+E ++DG E+TCG     D S    +TE+ V  ++++ YE KY+   S 
Sbjct: 183 AKAFAEAQEVLVEAFMDGTEITCGCYKTKDKSVVFPITEV-VSHNEYFDYEAKYNGA-SD 240

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
            + PA+I  D+ + VQ L    +  +G  GI R D++      K+  LE+N  PGMT  S
Sbjct: 241 EITPARISDDLTRRVQTLTSAIYDILGAYGIIRVDYIITE-GEKINLLEVNTTPGMTATS 299

Query: 273 IFPEMAAYAGYSFRELLLWMVED 295
             P+    AG   ++++  ++E+
Sbjct: 300 FIPQQVRAAGMEMKDVMTDIIEN 322


>gi|309805808|ref|ZP_07699845.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus iners
           LactinV 09V1-c]
 gi|308164928|gb|EFO67174.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus iners
           LactinV 09V1-c]
          Length = 360

 Score =  135 bits (339), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 99/336 (29%), Positives = 164/336 (48%), Gaps = 51/336 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALE------------DAGFKVSQID----------- 37
           + ++ GG SSE EVS+ SG+    A++            + GF  S  D           
Sbjct: 7   VGLIFGGNSSEYEVSIISGRNIYKAIDKEKYDVYPMWITNTGFLASDADSRKVLEDPSYQ 66

Query: 38  ------VDRSVGLVLAHLKP--DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
                 V     ++    +P  D+ F ++HGN GEDG +Q +L +L+ P+    +LA+A+
Sbjct: 67  IENPHNVTNISNVIELSCRPEIDVFFPIVHGNLGEDGCLQGLLRILDKPFVGDDVLAAAI 126

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYV---------IKPLKGGSS 138
           +MDK  +K +    GVPV   I + RF  +      +S  YV         +KP   GSS
Sbjct: 127 TMDKELNKIMAQRAGVPVADWISIKRFEYNDAKNEKLSYDYVSQKLGTDLFVKPANQGSS 186

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVP 195
           +GI  +         L +  ++ + D++L+E+ + G E+   V+G+    V+   +I   
Sbjct: 187 VGISHVTSASDYKAALAE--AFKYDDKVLVEETIKGTEVETAVLGNDDAIVSGVGQITNA 244

Query: 196 KSDFYSYELKYSSLNSTHVL--PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
           +  +YSYE KY+  NST  L  PA +P +I + V+R A   + A  C G++R D +    
Sbjct: 245 QGSWYSYENKYND-NSTSKLQIPAALPSEIIETVRRQALKVYHATECSGLARVDSMLSS- 302

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
             KV + E+N  PG T +S++P++    G S+ EL+
Sbjct: 303 DNKVIFNELNSLPGFTNISMYPKLFEQVGISYTELI 338


>gi|326790267|ref|YP_004308088.1| D-alanine/D-alanine ligase [Clostridium lentocellum DSM 5427]
 gi|326541031|gb|ADZ82890.1| D-alanine/D-alanine ligase [Clostridium lentocellum DSM 5427]
          Length = 298

 Score =  135 bits (339), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 91/294 (30%), Positives = 148/294 (50%), Gaps = 12/294 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + ++MGGISSE+EVSL SG+     +    ++   I +      +      D AF  LHG
Sbjct: 3   VGIIMGGISSEKEVSLKSGEEVLKHINKTKYEAIPIVLHSKKEAIDKLSGIDFAFLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG +QA+LE L+IPY+   +L SAL M+K  +K++++S  +     IL+      +
Sbjct: 63  RFGEDGTIQALLETLDIPYSGCRVLTSALCMNKHLTKKLLASENITTPKGILIKASEPLN 122

Query: 121 QHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS--SSWNHGDQLLIEQYVDGI 175
             + S    P ++KP  GGSS+G   ++       DLL +   ++ + ++LLIE+Y+ G 
Sbjct: 123 SSITSTLNYPLIVKPNTGGSSIGTCKVENKT----DLLSAIDEAFKYDEELLIEEYIAGE 178

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
           E+T  V+         I      F+ Y  KY ++N      A +P  +  +V ++A    
Sbjct: 179 EITSFVLDGEVFPTVCIKPRFGQFFDYNSKY-TINGALEEIALLPSILQDKVTQIAEKIW 237

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
               C+   R DF+    +  ++ LEIN  PG+T  S+ P+ A   G  F  L+
Sbjct: 238 ALFNCKSYCRIDFIIK--NETIYVLEINTLPGLTETSLIPQSAKAKGIDFTTLI 289


>gi|19552539|ref|NP_600541.1| D-alanyl-alanine synthetase A [Corynebacterium glutamicum ATCC
           13032]
 gi|62390203|ref|YP_225605.1| D-alanyl-alanine synthetase A [Corynebacterium glutamicum ATCC
           13032]
 gi|25452911|sp|Q8NQV2|DDL_CORGL RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|21324089|dbj|BAB98714.1| D-alanine-D-alanine ligase and related ATP-grasp enzymes
           [Corynebacterium glutamicum ATCC 13032]
 gi|41325539|emb|CAF20019.1| D-ALANINE--D-ALANINE LIGASE A [Corynebacterium glutamicum ATCC
           13032]
          Length = 360

 Score =  135 bits (339), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 105/353 (29%), Positives = 170/353 (48%), Gaps = 65/353 (18%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALE-------------DAGFKVSQID------VDRS 41
           +AV+ GG SSE  VS  S  A  + L+             D  + V + D      +DR+
Sbjct: 11  VAVVYGGRSSEHSVSCVSAGAIMAHLDPEKYDVIPVGITVDGAWVVGETDPQKLTLIDRT 70

Query: 42  VGLVLAH--LKP---------------------DLAFNVLHGNFGEDGLVQAILELLEIP 78
           +  V  H  ++P                     D+ F VLHG FGEDG VQ +  L +IP
Sbjct: 71  MPEVEHHEEVRPSLDPAHRGEFHFSDGSLYATADVIFPVLHGRFGEDGTVQGLFALSDIP 130

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFTMDSQHLISPPYVIKPLKG 135
               G+LASA  MDK  +K+++++ G+PV   +++      T   ++L+  P  +KP +G
Sbjct: 131 VVGPGVLASAAGMDKEYTKKLMAAEGLPVGREVILRDRTELTEAEKNLLGLPVFVKPARG 190

Query: 136 GSSLGI--IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG---------- 183
           GSS+GI  +   +D +  + L ++    H +++++E  + G E+ CGV+           
Sbjct: 191 GSSIGISRVTAWEDFNKAVGLARA----HDEKVIVESEIVGSEVECGVLQYPDGRIVASV 246

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
            A L  TE       FY ++ KY     T  +PA +     + +Q LA  + QA+ C G+
Sbjct: 247 PALLSGTESGA--GGFYDFDTKYLDNVVTAEIPAPLDEKTTELIQSLAVESFQALACEGL 304

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +R DF     +      EIN  PG TP+S++P+M   +G ++ ELL  +V+ A
Sbjct: 305 ARVDFFV--TANGPVLNEINTMPGFTPISMYPQMFTASGVAYEELLDVLVQQA 355


>gi|289616954|emb|CBI56344.1| unnamed protein product [Sordaria macrospora]
          Length = 334

 Score =  135 bits (339), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 88/335 (26%), Positives = 162/335 (48%), Gaps = 63/335 (18%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           +AV++GG S E +VS+S+G A  + ++ + + + +I + R       HL           
Sbjct: 11  IAVVVGGYSGEYDVSISTGAAIYTNVDRSRYNLYKIVIPRDPKAAWYHLTDSSQEIPVDR 70

Query: 50  --------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
                               K DLA+  +HGN GE+G++Q   ++L +PYT  G  AS+L
Sbjct: 71  NDFSVTLPSSSGSGENNQKIKFDLAYISIHGNPGENGVLQGYFDMLGLPYTSCGFYASSL 130

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP---PYVIKPLKGGSSLGIIVIKK 146
           + +                       F+ D+  L+     P  +KP  GGSS+    +K 
Sbjct: 131 TANN--------------------GTFSFDADALLREFELPVFVKPASGGSSVATTKVKS 170

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS-----LDVTEIAVPKSD--F 199
            + +   +  +   +   Q+L+E+++ G E  CGV+ DA+       +TE+ +P  D  +
Sbjct: 171 REQVVQAVEDAMREDGNGQVLVEEFIAGREFDCGVIRDAAGKLHVFPITEV-IPHGDSEY 229

Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
           + Y  KY+  +S+ V PA++  ++   ++ ++   +  + CRG+ R D+ +D   +++++
Sbjct: 230 FDYNAKYNG-SSSKVTPAEVEEEVSDRIKDVSAQLYDLLDCRGVVRFDYRYDTDKKQLYF 288

Query: 260 LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           LE+N  PG TP S+ P+ A  AG S  EL   ++E
Sbjct: 289 LEVNTIPGQTPESMVPQQARAAGISIAELYHMVIE 323


>gi|257438472|ref|ZP_05614227.1| D-alanine--D-alanine ligase A [Faecalibacterium prausnitzii A2-165]
 gi|257199051|gb|EEU97335.1| D-alanine--D-alanine ligase A [Faecalibacterium prausnitzii A2-165]
          Length = 365

 Score =  135 bits (339), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 96/345 (27%), Positives = 158/345 (45%), Gaps = 55/345 (15%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSV-------------------- 42
           VL GG+SSE EVS  S       L+ A ++V  + + R                      
Sbjct: 12  VLFGGMSSEHEVSRVSAGTFVDNLDRARYEVLTVGITREGRWLCTEATSAQMADGSWEEL 71

Query: 43  ---------------GLVL-------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYT 80
                          G++L         L  D+    LHG +GEDG VQ +LEL  IPY 
Sbjct: 72  PGNMPCVISPDRADHGMILFTPSGQVEKLHVDVVIPALHGLWGEDGTVQGLLELAGIPYV 131

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ---------HLISPPYVIK 131
             G+LASA+ MDK  +  +  + G+P    +   R+ ++S            +  P  +K
Sbjct: 132 GCGVLASAVCMDKAVANALFDAAGIPHTKWLSACRWEIESDLDGVCDGAIAKLGWPIFVK 191

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+GI        +   +  +   +H  +++ E +VDG E+ C V+G      T 
Sbjct: 192 PANAGSSVGITKAHDRDELKQAIALALENDH--KVVFEAFVDGHEVECAVIGSDPAVATR 249

Query: 192 IA--VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
               +  ++FY+Y+ KY +  S  V+PA++  +   EV+  A +A+ A+ C G++R DF 
Sbjct: 250 PGEILAGAEFYTYDDKYKNGVSQVVIPARLSEEKLDEVKTYAAMAYTALNCEGLARCDFF 309

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            +  + +V   EIN  PG TP+S++P++  + G     L+  ++E
Sbjct: 310 VEHGTDRVMINEINTFPGFTPISMYPKLMEHEGTPVPALIDHLIE 354


>gi|331671933|ref|ZP_08372729.1| D-alanine--D-alanine ligase A (D-alanylalanine synthetaseA)
           (D-Ala-D-Ala ligase A) [Escherichia coli TA280]
 gi|331070922|gb|EGI42281.1| D-alanine--D-alanine ligase A (D-alanylalanine synthetaseA)
           (D-Ala-D-Ala ligase A) [Escherichia coli TA280]
          Length = 364

 Score =  135 bits (339), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 95/349 (27%), Positives = 171/349 (48%), Gaps = 61/349 (17%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR--------SVGLVL-----A 47
           + ++ GG S+E EVSL S K    A++ + F V  + +D+        +   +L     A
Sbjct: 6   VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPA 65

Query: 48  H--LKP----------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
           H  L+P                            D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  HIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS---------PPY 128
           P+  S +LASA  MDK  +K+++   G+ + P I + R    ++H IS          P 
Sbjct: 126 PFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRA---NRHNISFAEVESKLGLPL 182

Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD 188
            +KP   GSS+G+  +  ++   + +  +  ++H  ++++EQ + G E+ C V+G+ +  
Sbjct: 183 FVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDH--KVIVEQGIKGREIECAVLGNDNPQ 240

Query: 189 VTEIA--VPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
            +     V  SDFY+Y+ KY   +    V+PA I  +I  +++ +A  A+Q +GC G++R
Sbjct: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMAR 300

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            D    P    V   EIN  PG T +S++P++   +G  + +L+  ++E
Sbjct: 301 VDVFLTP-ENDVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIE 348


>gi|331698554|ref|YP_004334793.1| D-alanine--D-alanine ligase [Pseudonocardia dioxanivorans CB1190]
 gi|326953243|gb|AEA26940.1| D-alanine--D-alanine ligase [Pseudonocardia dioxanivorans CB1190]
          Length = 365

 Score =  135 bits (339), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 91/275 (33%), Positives = 150/275 (54%), Gaps = 21/275 (7%)

Query: 35  QIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKM 94
           ++D DR+ G V + +  D+ F VLHG FGEDG +Q + E+  +PY  SG+LASA  MDK 
Sbjct: 91  RLDRDRA-GEVFSGV--DVVFPVLHGPFGEDGTIQGLFEMAGLPYVGSGVLASAAGMDKE 147

Query: 95  RSKQVVSSCGVPVCPSILVNR-----FTMDSQHLISPPYVIKPLKGGSSLGII-VIKKDQ 148
            +K+++++ G+ V  S++V R      T   Q  +  P  +KP + GSS+GI  V   D+
Sbjct: 148 FTKKLLAAEGLAVG-SLVVLRPGTQSLTAAQQERLGLPVFVKPARAGSSVGITRVTSWDR 206

Query: 149 SIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG--DASLDVT-----EIAVPKSDFYS 201
              LD   +++  H  ++L+E  + G E+ CGV+   D ++  +      +    ++FY 
Sbjct: 207 ---LDEAVAAARVHDPKVLVEAAIVGREVECGVLEYPDGTVRASLPAEIRLVSGSAEFYD 263

Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
           ++ KY        +PAK+  D+ + V+  A  A +A+ C+G++R DF        V   E
Sbjct: 264 FDAKYLDDACEFDIPAKLDDDVTERVRDQAVAAFRALDCQGLARVDFFVGDDGAPVVN-E 322

Query: 262 INVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +N  PG TP+S++P M A  G  +  LL  +V+ A
Sbjct: 323 VNTMPGFTPISMYPRMWAETGVDYPTLLATLVDTA 357


>gi|325335498|gb|ADZ11772.1| D-alanine-D-alanine ligase related ATP-grasp enzyme [Riemerella
           anatipestifer RA-GD]
          Length = 327

 Score =  135 bits (339), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 99/325 (30%), Positives = 167/325 (51%), Gaps = 35/325 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40
           +AV+MGG S E +VSL SG+    +L+   + V ++ V                    D 
Sbjct: 6   IAVVMGGYSDEYKVSLKSGQLIYDSLDRDLYNVYKVVVLKEGWFYLDENEAKLPIQKGDF 65

Query: 41  SVGLVLAH-LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
           SV L     L+ D+ FN++HG  GE+G++QA  + +   YT      SAL+ +K  +  V
Sbjct: 66  SVNLPSGEVLRFDVCFNIIHGTPGENGVLQAYWDAIGQKYTGCDFYQSALTFNKKDTLAV 125

Query: 100 VSSCGVPVCPSILVNRF-TMDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
           ++  G+P   S  + +    D   +I+    P  +KP + GSSLGI  +K+       L 
Sbjct: 126 LAKYGIPSAKSFYIKKGEAYDKDKIINELKLPLFVKPNQSGSSLGISKVKEVSEFEAAL- 184

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVM---GDA-SLDVTEIAVPKSDFYSYELKYSSLNS 211
              ++   D++L+E ++DG+E++ GV+   G+   L +TEI +P+++F+ YE KY    S
Sbjct: 185 -EKAFLEDDEVLVESFLDGMEVSVGVLDYKGETIVLGITEI-IPETEFFDYEAKYQGA-S 241

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271
             ++PA++       V+ +A  A+  +G +G SRS+++   +    + LE+N  PG +P 
Sbjct: 242 QEIIPARLDEATRLRVEEVAKRAYNYLGMKGFSRSEYII--MDGVPYMLEMNTNPGFSPA 299

Query: 272 SIFPEMAAYAGYSFRELLLWMVEDA 296
           SI P+ A   G S  +L    VE A
Sbjct: 300 SILPQQARIYGISITDLCGNEVEKA 324


>gi|258651717|ref|YP_003200873.1| D-alanine/D-alanine ligase [Nakamurella multipartita DSM 44233]
 gi|258554942|gb|ACV77884.1| D-alanine/D-alanine ligase [Nakamurella multipartita DSM 44233]
          Length = 367

 Score =  135 bits (339), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 94/297 (31%), Positives = 163/297 (54%), Gaps = 23/297 (7%)

Query: 16  LSSGKACASALEDAGFKVSQID--VDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILE 73
           +S+G A A  ++     +  ID  VDRS     A +  ++ F VLHG +GEDG +Q +LE
Sbjct: 70  VSTGSAVALPVDPTAAALVSIDPSVDRS-----AVVDVEVVFPVLHGPYGEDGTIQGLLE 124

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN----RFTMDSQHLISPPYV 129
           L  +PY  +G+LASA +MDK  +K+++++ G+PV   +++       T + +  +  P  
Sbjct: 125 LAGVPYVGAGVLASAAAMDKEFTKKLLAAEGLPVGDWVVLRPGTPTLTAEQKQRLGLPVF 184

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM--GDASL 187
           +KP + GSSLG+  +   +   LD   + +     ++L+E  V G E+ CGV+   D  +
Sbjct: 185 VKPARAGSSLGVSRVA--EWAELDRAIAIARETDPKVLVEAAVVGREVECGVLEHPDGRI 242

Query: 188 DVT---EIAVPKS-DFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
           + +   EI V    +FY ++ KY     ++  +PA +P ++   +  L+  A  A+  +G
Sbjct: 243 EASPPAEIHVGGGYEFYDFDAKYLDDTAASFDIPADLPDEVTARIHELSRRAFAALDAQG 302

Query: 243 ISRSDFLFDP---LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           ++R DF   P   L+ +V   E+N  PG TP+S++P M A AG S+R+L+  ++  A
Sbjct: 303 LARVDFFVRPDGDLADRVVINEVNTLPGFTPISMYPAMWAKAGVSYRDLITVLIRTA 359


>gi|163786074|ref|ZP_02180522.1| D-alanylalanine synthetase [Flavobacteriales bacterium ALC-1]
 gi|159877934|gb|EDP71990.1| D-alanylalanine synthetase [Flavobacteriales bacterium ALC-1]
          Length = 317

 Score =  135 bits (339), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 94/320 (29%), Positives = 159/320 (49%), Gaps = 34/320 (10%)

Query: 5   MGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DRSVGL 44
           MGG SSE ++SL SG      L+   +   +I +                    D S+ +
Sbjct: 1   MGGYSSEYQISLKSGNVVYETLDKEKYNAFRIHIFKDKWVFVNDLDNEFPVDKNDFSIKV 60

Query: 45  VLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCG 104
               +  D  FN +HG+ GEDG +Q   EL+ IP T   +  +AL+ +K      +   G
Sbjct: 61  NGVKITFDCVFNAIHGSPGEDGFMQGYFELIGIPQTSCNMYQAALTFNKRDLLATLKPYG 120

Query: 105 VPVCPSILVNRFTMDSQHLISP----PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160
           +    S  +N     ++  I      P  +K  K GSS GI  + K + +   +  ++S+
Sbjct: 121 IKTAESYYLNLGDAINEGAIVAKVGLPCFVKANKAGSSFGISKVYKKEDLKAAI--NNSF 178

Query: 161 NHGDQLLIEQYVDGIELTCGVM---GDAS-LDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216
              ++++IEQ++DG+E++ GV+   G+   L +TEI V ++DF+ Y  KY    S  + P
Sbjct: 179 KEDNEIIIEQFLDGVEVSVGVISYRGETKVLPITEI-VSENDFFDYAAKYEG-KSQEITP 236

Query: 217 AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPE 276
           A+I  D  ++   +A   ++ +G  G SRS+F+F   + + + LE+N  PG+T  SI P+
Sbjct: 237 ARISKDYEQKTVTVAKQVYEILGMTGFSRSEFIFK--NDEPYLLEMNTVPGLTKESILPQ 294

Query: 277 MAAYAGYSFRELLLWMVEDA 296
            AA AG +  +L    +E+A
Sbjct: 295 QAAEAGINMSDLFDNAIEEA 314


>gi|170078193|ref|YP_001734831.1| D-alanyl-alanine synthetase A [Synechococcus sp. PCC 7002]
 gi|190359212|sp|B1XNQ0|DDL_SYNP2 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|169885862|gb|ACA99575.1| D-alanyl-D-alanine ligase [Synechococcus sp. PCC 7002]
          Length = 353

 Score =  135 bits (339), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 89/261 (34%), Positives = 140/261 (53%), Gaps = 20/261 (7%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D  F ++HG  GEDG +Q +L L+E P+  S +L SA  MDK+  K V +  G+     +
Sbjct: 90  DAWFPIVHGPNGEDGTLQGLLTLMEKPFVGSKVLGSAAGMDKLAMKMVFAQAGLAQVDYV 149

Query: 112 LVNRFTMDSQHLISP------------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
            V R  + S   + P            P  +KP   GSS+GI  ++    +   L  ++ 
Sbjct: 150 GVLRSEVWSGPCVFPKVCDKIEAQLDYPMFVKPANLGSSVGISKVRTRDELEKALDLAAE 209

Query: 160 WNHGDQLLIEQYVDGIELTCGVMGD----ASLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215
           ++   +L++E  V   E+ C V+G+    AS+ V EI    SDFY YE KY+   S+  +
Sbjct: 210 YDR--RLIVEAGVTAREVECAVLGNDQPKASV-VGEIRF-DSDFYDYETKYTDGKSSMHI 265

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275
           PA+IP  I +++Q LA  A QA+ CRGI+R DF +   ++ V   EIN  PG T +S++P
Sbjct: 266 PAEIPGAIAQQIQELAIKAFQALDCRGIARVDFFYVEATQTVLINEINTLPGFTALSMYP 325

Query: 276 EMAAYAGYSFRELLLWMVEDA 296
           ++   +G  F +L+  +V+ A
Sbjct: 326 QLWQQSGVPFPQLVDRLVQFA 346


>gi|138893874|ref|YP_001124327.1| D-alanyl-alanine synthetase A [Geobacillus thermodenitrificans
           NG80-2]
 gi|196250552|ref|ZP_03149242.1| D-alanine--D-alanine ligase [Geobacillus sp. G11MC16]
 gi|166198485|sp|A4IJS8|DDL_GEOTN RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|134265387|gb|ABO65582.1| D-alanine-D-alanine ligase [Geobacillus thermodenitrificans NG80-2]
 gi|196209901|gb|EDY04670.1| D-alanine--D-alanine ligase [Geobacillus sp. G11MC16]
          Length = 364

 Score =  135 bits (339), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 96/340 (28%), Positives = 160/340 (47%), Gaps = 54/340 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------DRSVGLV------ 45
           + VL GG S E +VSLS+ +A  +A++   F V  I +          R  G V      
Sbjct: 5   VGVLYGGKSPEHQVSLSTARAVMNAIDPHKFDVIPIYITPEGQWIKGKRLTGTVEEVKQL 64

Query: 46  -----LAHLKP--------------------DLAFNVLHGNFGEDGLVQAILELLEIPYT 80
                   + P                    D+ F +LHG  GEDG VQ +LE+L +PY 
Sbjct: 65  QFTSTATAMIPVSLNQVPASGSATESDEETIDVIFPLLHGPNGEDGTVQGLLEMLNLPYV 124

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIK 131
            +G+LASA+ MDK+  K + +  G+     + V ++             +  +  P  +K
Sbjct: 125 GNGVLASAVGMDKVVMKNLFAQAGLRQAKYVSVTKYEWKKGGEAVYDRIEQELGYPCFVK 184

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS--LDV 189
           P   GSS+GI   K+   +     ++  ++   +++IE+ + G E+  GV+G+      V
Sbjct: 185 PANAGSSVGISKCKQRDDLKTAFAEAFKYDR--KIIIEESIVGREIEIGVIGNDEPICSV 242

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
               VPK +FY YE KY    +  ++PA +  + Y+ ++ +A  A +A+   G++R DF 
Sbjct: 243 AGEIVPKKEFYDYEAKYEDGQTELIIPANVTEEQYETIKSMAIAAFKALDLSGLARVDF- 301

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           F      V+  E+N  PG TP S+FP +  ++G  + EL+
Sbjct: 302 FLAEDGTVYINEVNTMPGFTPYSMFPLLWQHSGVPYSELI 341


>gi|302558175|ref|ZP_07310517.1| D-alanine-D-alanine ligase [Streptomyces griseoflavus Tu4000]
 gi|302475793|gb|EFL38886.1| D-alanine-D-alanine ligase [Streptomyces griseoflavus Tu4000]
          Length = 385

 Score =  134 bits (338), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 93/263 (35%), Positives = 137/263 (52%), Gaps = 23/263 (8%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+ F VLHG +GEDG +Q +LEL  +PY  SG+LASA+  DK   K+V +S G+ V P +
Sbjct: 120 DVVFPVLHGPYGEDGTLQGLLELSGVPYVGSGVLASAVGQDKEYMKRVFTSFGLKVGPYL 179

Query: 112 LV------------NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
           ++             R  +D       P  +KP + GSS+GI   K D    LD   + +
Sbjct: 180 VIRPREWERDESAARRKIVDFAGEHGWPLFVKPARAGSSIGI--TKVDDLSALDEAIAEA 237

Query: 160 WNHGDQLLIEQYVDGIELTCGVM----GDASLDVTEIAVPKSD-FYSYELKYSSLNST-H 213
             H  + L+E  + G E+ CGV+    G  +    EI  P +  +Y +E KY  ++ST  
Sbjct: 238 RRHDPKFLVEAALRGREIECGVLEFEDGPRASLPAEIPPPDAHAYYDFEAKY--IDSTPG 295

Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273
           ++PA +  +   EV+RLA  A  A  C G+ R+DF        V   EIN  PG TP+S+
Sbjct: 296 IVPAPLTDEETAEVRRLAVEAFDAASCEGLVRADFFLTEDGEFVI-NEINTMPGFTPISM 354

Query: 274 FPEMAAYAGYSFRELLLWMVEDA 296
           +P+M    G S+ EL+  +V  A
Sbjct: 355 YPQMWQATGVSYPELVDLLVRAA 377


>gi|126661460|ref|ZP_01732516.1| D-alanylalanine synthetase [Cyanothece sp. CCY0110]
 gi|126617252|gb|EAZ88065.1| D-alanylalanine synthetase [Cyanothece sp. CCY0110]
          Length = 349

 Score =  134 bits (338), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 78/254 (30%), Positives = 133/254 (52%), Gaps = 16/254 (6%)

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116
           VLHG  GEDG +Q +L L+++P+  SG+L SA+ MDK+  K   +  G+P      V R 
Sbjct: 95  VLHGPNGEDGTIQGLLRLMQVPFVGSGVLGSAVGMDKIAMKMAFAQAGLPQVKYRAVERS 154

Query: 117 TMDSQHLISP------------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164
            + S   I P            P  +KP   GSS+GI  ++    +   L  ++S++   
Sbjct: 155 QVWSNPCIFPKLCDEIEADLGYPCFVKPANLGSSVGIAKVRSHSELETALDSAASYDR-- 212

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIA--VPKSDFYSYELKYSSLNSTHVLPAKIPLD 222
           +++IE  V+  EL C V+G+ +   + +     + DFY YE KY+   S   +PA +P  
Sbjct: 213 RIVIEAGVNARELECAVLGNDNPKASVVGEVTFEGDFYDYETKYTEGRSQIHIPANLPDK 272

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAG 282
           I  ++Q +A  A + +   G++R DF +   + +++  EIN  PG T  S++P++    G
Sbjct: 273 IVTQIQEMAIQAFKTVDAAGLARVDFFYVEETEEIYLNEINTLPGFTKFSMYPQLWKATG 332

Query: 283 YSFRELLLWMVEDA 296
            +F +L+  +V+ A
Sbjct: 333 INFEQLVDQLVQFA 346


>gi|149178379|ref|ZP_01856970.1| D-alanine--D-alanine ligase [Planctomyces maris DSM 8797]
 gi|148842797|gb|EDL57169.1| D-alanine--D-alanine ligase [Planctomyces maris DSM 8797]
          Length = 320

 Score =  134 bits (338), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 100/300 (33%), Positives = 152/300 (50%), Gaps = 23/300 (7%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKV-----SQIDVDRSVGLVLAHLKPDLAF 55
           + VL GG S+E E+SL SG+  A AL   G +V     S +D+DR           D+ F
Sbjct: 14  IVVLSGGESAESEISLKSGETVARALSSRGHQVKIVDPSLVDLDR-----FDWTGCDVVF 68

Query: 56  NVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR 115
             LHG +GEDG +Q+ L+ L IPY+      S L+  K  SK+      V   PS ++  
Sbjct: 69  LALHGTYGEDGTIQSTLDRLGIPYSGCDAATSKLAFSKSASKERFIQHNVNT-PSYVLIH 127

Query: 116 FTMDS----QHLISP--PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQL-LI 168
            + D+    QH  S   P V+KP   GSSLG+ ++K  + +P  L +     H D   ++
Sbjct: 128 ESDDAGRIEQHARSMGYPLVVKPDAQGSSLGVTIVKSPEELPQALARCF---HYDSFGIL 184

Query: 169 EQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           E  + G E T  V+ D  L + +I  P  +F+ YE KY+  ++ ++    +P ++ + + 
Sbjct: 185 ESAIKGTEWTVTVVDDQVLPLIQIQTPH-EFFDYEAKYTEDSTQYLFEFDLPTNVIQAII 243

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           +    A  A+G  GI R D L D   ++ + LE+N  PG T  S+ P+ AA AG  F EL
Sbjct: 244 KTGVNACTALGTTGIVRVDLLVDRF-QQPWVLEVNTIPGFTDHSLVPKAAAKAGIDFGEL 302


>gi|260909667|ref|ZP_05916362.1| D-alanine-D-alanine ligase [Prevotella sp. oral taxon 472 str.
           F0295]
 gi|260636226|gb|EEX54221.1| D-alanine-D-alanine ligase [Prevotella sp. oral taxon 472 str.
           F0295]
          Length = 392

 Score =  134 bits (338), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 97/329 (29%), Positives = 157/329 (47%), Gaps = 39/329 (11%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR----------------SVGL 44
           +A++ GG SSE EVSL S +   S  +   + V  +D++R                    
Sbjct: 67  IAIVCGGNSSEHEVSLRSARGLYSFFDKEKYNVYIVDIERMNWKVDLGNGERAIIDKNDF 126

Query: 45  VLAHLKP----DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
              H       D A+  +HG  GE+G++Q   EL+++PY+ SG+L  AL+ DK      +
Sbjct: 127 SFVHEGEQVFFDYAYITIHGTPGENGIMQGYFELIDMPYSTSGVLVEALTFDKYVLNNYL 186

Query: 101 SSCGVPVCPSILVNR---FTMDSQHL---ISPPYVIKPLKGGSSLGIIVIKK-DQSIPLD 153
              GV V  SILV R   F +D + +   +  P  +KP   GSS G+  +K  DQ  P  
Sbjct: 187 RGFGVNVANSILVRRGEEFGIDERAVEAQLGMPCFVKPAADGSSFGVSKVKNIDQLAP-- 244

Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCG---VMGDAS-LDVTEIAVPKSDFYSYELKYSSL 209
                +    D  +IE ++DG E++ G   V G+   L  TE+ V  ++F+ Y+ KY+  
Sbjct: 245 -ALRKALMEDDSAVIESFLDGTEISVGCYRVKGETKVLPATEV-VSHNEFFDYDAKYNG- 301

Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL---SRKVFWLEINVQP 266
               + PA+I  +  + V       ++ + C GI R D++       + K+  +E+N  P
Sbjct: 302 QVEEITPARIADETARRVAEETARIYEILNCNGIIRIDYILTKEPDGTDKINLIEVNTTP 361

Query: 267 GMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           GMTP S  P+    AG   +++L  +VE+
Sbjct: 362 GMTPTSFIPQQVRAAGMEMKDVLSEIVEN 390


>gi|188579044|ref|YP_001915973.1| D-alanyl-alanine synthetase A [Xanthomonas oryzae pv. oryzae
           PXO99A]
 gi|188523496|gb|ACD61441.1| D-alanine--D-alanine ligase A [Xanthomonas oryzae pv. oryzae
           PXO99A]
          Length = 369

 Score =  134 bits (338), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 84/258 (32%), Positives = 140/258 (54%), Gaps = 12/258 (4%)

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV 105
           LA  + D+ F ++HG  GEDG +Q +L +  +P+  SG+L SA++MDK  +K+V+    +
Sbjct: 96  LALAQIDVVFPIVHGTLGEDGSLQGLLRMANLPFVGSGVLGSAVAMDKDMAKRVLRDARL 155

Query: 106 PVCPSILVNRFT---MDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
            V P +  +R T    D   LI+    P  +KP   GSS+G+  ++   +    L  + +
Sbjct: 156 AVAPFVCFDRHTAAHADVDTLIAQLGLPLFVKPANQGSSVGVSQVRTADAFAAALALALA 215

Query: 160 WNHGDQLLIEQYVDGIELTCGVMGDA--SLDVTEIAVPKSDFYSYELKYSSLNSTH-VLP 216
           ++H  ++L+E  V G E+ C V+G+A     V    V    FYSY  KY S +    V+P
Sbjct: 216 YDH--KVLVEAAVAGREIECAVLGNAVPHASVCGEVVVHDAFYSYATKYISEHGAEIVIP 273

Query: 217 AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPE 276
           A I     + +Q++A  A+QA+GC G++R D       R V   E+N  PG T +S++P+
Sbjct: 274 ADIDAQTQQRIQQIAVQAYQALGCAGMARVDVFLCADGRIVIN-EVNTLPGFTRISMYPK 332

Query: 277 MAAYAGYSFRELLLWMVE 294
           +   +G  +R L+  ++E
Sbjct: 333 LWQASGLDYRGLITRLIE 350


>gi|54013449|dbj|BAD60786.1| D-alanyl-D-alanine ligase [Streptomyces lavendulae subsp.
           lavendulae]
          Length = 345

 Score =  134 bits (338), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 103/335 (30%), Positives = 153/335 (45%), Gaps = 53/335 (15%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP----------- 51
           +L GG S ER+VSL+SG + A AL + G +V  +D      ++   L P           
Sbjct: 5   ILCGGESPERDVSLASGSSVARALLERGHEVLLVDPAAGEPVLAGPLHPGDVVDGFEVGK 64

Query: 52  -------------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYT 80
                                          DL F  LHG +GEDG VQ  LE   + +T
Sbjct: 65  EPPAGHERHGLRQRMAAAFDGGALPALLRDADLVFTALHGGWGEDGWVQERLEAAGVRFT 124

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP-----PYVIKPLKG 135
            +G  A A + +K R++ V+++ GVPV    L      +    + P     P V KP+  
Sbjct: 125 GAGSTACAAAWNKERAQAVLAAAGVPVTERALWPAAADEVPKEVRPLVAAGPVVAKPVAD 184

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195
           GSS  + V + D    L+ L       G  LL+E ++ G E T GV+G   L V EI + 
Sbjct: 185 GSS--VSVHRADSLAELERLAPQMRADGGDLLVEPFLSGREFTVGVVGGQVLPVIEIEL- 241

Query: 196 KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI--GCRGISRSDFLFDPL 253
            +  + Y  KY     + V PA+IP +    +Q+LA  AH+A+  G    SR+DF  D  
Sbjct: 242 STPLFDYAAKYQPGAVSEVCPARIPEEFASRLQQLALRAHEALGFGPHTYSRADFRCDAA 301

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
              +  LE+N  PG+T  S+ P  A+ AG+++ +L
Sbjct: 302 GEPMC-LEVNALPGLTATSLLPLGASGAGWTYADL 335


>gi|300362570|ref|ZP_07058746.1| D-alanine--D-alanine ligase [Lactobacillus gasseri JV-V03]
 gi|300353561|gb|EFJ69433.1| D-alanine--D-alanine ligase [Lactobacillus gasseri JV-V03]
          Length = 375

 Score =  134 bits (338), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 79/260 (30%), Positives = 141/260 (54%), Gaps = 17/260 (6%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+ F ++HGN GEDG +Q +  +L+ P+    +LA+A++MDK  +K +    GVPV   I
Sbjct: 103 DVFFPIVHGNLGEDGCLQGLFRVLDKPFVGDDVLAAAVTMDKEMTKILAQRAGVPVAKWI 162

Query: 112 LVNRF--------TMDSQHLIS---PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160
            V RF         +D +++ S       +KP   GSS+G+  +  ++   + L  + ++
Sbjct: 163 AVKRFEYNDPDNEKLDYEYVASQLGSDLFVKPSNQGSSVGVSHVTNEKEYKVAL--AEAF 220

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDAS---LDVTEIAVPKSDFYSYELKY-SSLNSTHVLP 216
            + D++L+E+ V G E+   V+G+       V +I   K  FY+YE KY     ST  +P
Sbjct: 221 KYDDKVLVEETVHGTEVETAVLGNDKPIVAGVGQIINAKDSFYTYENKYDDDSTSTLEIP 280

Query: 217 AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPE 276
           AK+P  I ++V++ A    QA  C G++R D +    +++V   E+N  PG T +S++P+
Sbjct: 281 AKLPEGIVEKVRKNALKVFQATECSGLARIDSMLRTEAKEVVLTEVNALPGFTNISMYPK 340

Query: 277 MAAYAGYSFRELLLWMVEDA 296
           +    G  + +L+  +++ A
Sbjct: 341 LFEEVGIPYTDLITKLIDYA 360


>gi|318056533|ref|ZP_07975256.1| D-alanyl-alanine synthetase A [Streptomyces sp. SA3_actG]
 gi|318076094|ref|ZP_07983426.1| D-alanyl-alanine synthetase A [Streptomyces sp. SA3_actF]
          Length = 389

 Score =  134 bits (338), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 90/263 (34%), Positives = 138/263 (52%), Gaps = 24/263 (9%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+ F +LHG +GEDG +Q +LEL   PY  +G+LASA+  DK   K++ +S G+ V P +
Sbjct: 125 DVVFPMLHGPYGEDGTLQGLLELSGTPYVGAGVLASAVGQDKEYMKRIFTSFGLAVGPYL 184

Query: 112 LV------------NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
           ++             R   D       P  +KP +GGSS+GI   K D    LD   + +
Sbjct: 185 VIRPREWEQDPDAARRRIADFAGDHGWPLFVKPARGGSSVGI--SKVDGFDGLDEAIAEA 242

Query: 160 WNHGDQLLIEQYVDGIELTCGVM-----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHV 214
             H  + LIE  V G E+ CGV+       AS+      V    +Y +E KY   +++ +
Sbjct: 243 RRHDPKFLIESLVQGREIECGVLEFEDGPRASVPAEIPPVTDHAYYDFEAKYID-SASGL 301

Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL-EINVQPGMTPVSI 273
           +PA +  +   EVQRLA  A +A  C G+ R+DF    L+   F + EIN  PG TP+S+
Sbjct: 302 VPAPLTPEETAEVQRLAVAAFEATSCEGLVRADFF---LTDDGFVINEINTMPGFTPISM 358

Query: 274 FPEMAAYAGYSFRELLLWMVEDA 296
           +P+M   +G  + EL+  +++ A
Sbjct: 359 YPQMWEKSGVGYAELVDRLIQAA 381


>gi|256784985|ref|ZP_05523416.1| D-alanyl-alanine synthetase A [Streptomyces lividans TK24]
          Length = 367

 Score =  134 bits (338), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 92/263 (34%), Positives = 136/263 (51%), Gaps = 23/263 (8%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+ F VLHG +GEDG +Q +LEL  +PY  +G+LASA+  DK   K V +S G+ V P  
Sbjct: 102 DVVFPVLHGPYGEDGTLQGLLELSGVPYVGAGVLASAVGQDKEYMKAVFTSYGLKVGPYA 161

Query: 112 LV------------NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
           ++             +  +D       P  +KP + GSS+GI   K D    LD     +
Sbjct: 162 VIRPREWEQDRSGARKKIVDFAGEHGWPLFVKPARAGSSIGI--TKVDDLAGLDEAIEEA 219

Query: 160 WNHGDQLLIEQYVDGIELTCGVM----GDASLDVTEIAVPKSD-FYSYELKYSSLNST-H 213
             H  ++L+E  + G E+ CGV+    G  +    EI  P    +Y +E KY  ++ST  
Sbjct: 220 RRHDPKILVEAALRGREIECGVLEFEDGPRASVPAEIPPPSEHAYYDFEAKY--IDSTPG 277

Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273
           ++PA +  +   EVQRLA  A  A  C G+ R+DF        V   EIN  PG TP+S+
Sbjct: 278 IVPAPLTAEETAEVQRLAVAAFDAASCEGLVRADFFLTEDDEFVI-NEINTMPGFTPISM 336

Query: 274 FPEMAAYAGYSFRELLLWMVEDA 296
           +P+M   +G S+ EL+  +V+ A
Sbjct: 337 YPQMWQASGVSYPELVDRLVQAA 359


>gi|240168958|ref|ZP_04747617.1| D-alanyl-alanine synthetase A [Mycobacterium kansasii ATCC 12478]
          Length = 370

 Score =  134 bits (338), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 92/268 (34%), Positives = 146/268 (54%), Gaps = 20/268 (7%)

Query: 43  GLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS 102
           G VLA +  D+ F VLHG +GEDG +Q +LEL  +PY  +G+LASA  MDK  +K+++++
Sbjct: 101 GEVLASV--DVVFPVLHGPYGEDGTIQGLLELAGVPYVGAGVLASAAGMDKEFTKKLLTA 158

Query: 103 CGVPVCPSILVN----RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS 158
            G+PV P  ++       ++D    +  P  +KP +GGSS+G+  +     +P  + ++ 
Sbjct: 159 DGLPVGPHAVLRPSRPALSLDECERLGLPAYVKPARGGSSIGVSRVSSWDELPAAVAEAR 218

Query: 159 SWNHGDQLLIEQYVDGIELTCGVM--GDASLDVT---EIAVP-----KSDFYSYELKYSS 208
              H  ++++E  V+G EL CGV+   D ++  +   EI V      +  FY +  KY  
Sbjct: 219 --RHDPKVIVEAAVNGRELECGVLEFPDGTVQASTLGEIRVAGVRGREDAFYDFATKYLD 276

Query: 209 LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268
             +   +PAK+  D+   V+ LA  A  AI C+G++R DF        +   EIN  PG 
Sbjct: 277 DAAELDVPAKVDDDVADAVRDLAIRAFHAIDCQGLARVDFFLTEEGPVIN--EINTMPGF 334

Query: 269 TPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           T +S++P M A +G  +  LL  MVE A
Sbjct: 335 TTISMYPRMWAASGVDYPTLLATMVETA 362


>gi|325281885|ref|YP_004254427.1| D-alanine--D-alanine ligase [Odoribacter splanchnicus DSM 20712]
 gi|324313694|gb|ADY34247.1| D-alanine--D-alanine ligase [Odoribacter splanchnicus DSM 20712]
          Length = 326

 Score =  134 bits (338), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 92/324 (28%), Positives = 154/324 (47%), Gaps = 36/324 (11%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALE---------------------DAGFKVSQIDVD 39
           + V+ GG SSE EVS+ SG    S ++                     D  F V + D  
Sbjct: 5   VVVIAGGNSSEYEVSIKSGNHIFSEVDGEKYNKYLMILRGRDWMVEIGDQKFPVDKNDF- 63

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
            S       +  D A+  +HGN GE+G++Q  L+++ +PY+    L  A++ DK      
Sbjct: 64  -SFEYQGKKVVFDFAYITIHGNPGENGMLQGYLDMMGVPYSTCNTLVEAITFDKYTCTNY 122

Query: 100 VSSCGVPVC-PSILVNRFTMDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
           +++ G+    P +LV     D + ++     P  IKP   GSS G+  +K   +   D  
Sbjct: 123 LNAFGINTTHPIMLVRGKAFDKEAVLKAVGLPCFIKPNAEGSSFGVSKVK--TAADFDAA 180

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGV--MGDAS--LDVTEIAVPKSDFYSYELKYSSLNS 211
              ++    ++L+E ++DGIE TCG+  +GD    + V E+ VPK +F+ YE KY +  S
Sbjct: 181 VEGAFKMCREILVESFIDGIEFTCGLYKVGDKKVVMPVAEV-VPKKEFFDYEAKYDAKMS 239

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271
             ++P +   +I   +Q +A   +  + C GI R D        ++  LE+N  PGMT  
Sbjct: 240 DEIIPGRFSAEITGRIQDMASEVYDILRCEGIVRIDGFV--RGEEIIMLEVNTTPGMTAN 297

Query: 272 SIFPEMAAYAGYSFRELLLWMVED 295
           S  P+M    G   R+++  ++E+
Sbjct: 298 SFVPKMVRVMGLPLRDVITGIIEE 321


>gi|270295586|ref|ZP_06201787.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270274833|gb|EFA20694.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 326

 Score =  134 bits (338), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 95/323 (29%), Positives = 159/323 (49%), Gaps = 33/323 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-----------------VDRS-V 42
           +A++ GG +SE  VSL S +   S ++   + +  ++                 VDR+  
Sbjct: 5   IAIVAGGDTSEFHVSLRSAQGIYSFIDKEKYTLYIVEMHGLDWHVQLPDGAKAPVDRNDF 64

Query: 43  GLVLAHLKP--DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
             VL   K   D A+  +HG  GEDG +Q   ++L IPY+  G+LA++L+ DK    Q +
Sbjct: 65  SFVLDGEKVTFDFAYITIHGTPGEDGRLQGYFDMLHIPYSCCGVLAASLTYDKFACNQYL 124

Query: 101 SSCGVPVCPSILVNR----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
              GV +  S+L+         D    I  P  IKP  GGSS G+  +   + I   +  
Sbjct: 125 KGFGVRIAESLLLRGGQSVTDEDVMEKIGLPCFIKPSLGGSSFGVTKVTAKEQIQPAI-- 182

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGV--MGDAS--LDVTEIAVPKSDFYSYELKYSSLNST 212
           + ++    ++L+E ++DG E+TCG     D S    +TE+ V  ++++ YE KY+   S 
Sbjct: 183 AKAFAEAQEVLVEAFMDGTEITCGCYKTKDKSVVFPITEV-VSYNEYFDYEAKYNGA-SD 240

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
            + PA+I  D+ + VQ L    +  +G  GI R D++      K+  LE+N  PGMT  S
Sbjct: 241 EITPARISDDLTRRVQTLTSAIYDILGAYGIIRVDYIITE-GEKINLLEVNTTPGMTATS 299

Query: 273 IFPEMAAYAGYSFRELLLWMVED 295
             P+    AG   ++++  ++E+
Sbjct: 300 FIPQQVRAAGMEMKDVMTDIIEN 322


>gi|222085556|ref|YP_002544086.1| D-alanine-D-alanine ligase protein [Agrobacterium radiobacter K84]
 gi|221723004|gb|ACM26160.1| D-alanine-D-alanine ligase protein [Agrobacterium radiobacter K84]
          Length = 355

 Score =  134 bits (338), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 102/345 (29%), Positives = 170/345 (49%), Gaps = 55/345 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------------------- 40
           +AVL GG SSE +VSL S +    A++   +++  I + R                    
Sbjct: 7   VAVLFGGQSSEHDVSLMSARNVIKAIDVDKYEIVPIVIRRDGQWLLTALEGGALPDPVVY 66

Query: 41  ----------SVGLVLAHLKP---------DLAFNVLHGNFGEDGLVQAILELLEIPYTH 81
                       G +LA   P         D+ F VLHG +GEDG +Q +  ++ +P   
Sbjct: 67  AGSEVCLLPGGKGRILAVGDPTGPRELPAIDILFPVLHGLYGEDGSIQGLARMVGVPLVG 126

Query: 82  SGILASALSMDKMRSKQVVSSCGVPVCPSILVN-----RFTMDSQHLISPPYVIKPLKGG 136
            GIL SA ++DK  +K+++   G+PV  SI V       F   +  L SP +V KP++ G
Sbjct: 127 CGILGSATAIDKDIAKRLLRDAGLPVARSITVRPGDTLSFEEAASALGSPVFV-KPVRQG 185

Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM--GDASLDVT---E 191
           SS+G+      +     L++  ++ H D++LIE++V   E+ C V+   D +L V+   E
Sbjct: 186 SSVGVSKAANAEEFRAALIE--AFKHDDKVLIEEFVKAREIECAVLEQTDGTLFVSLPGE 243

Query: 192 IAVPKS-DFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
           I   +   FY+Y+ KY     +   +PA++P D+ + ++ L+  A +A+GC G++R DF 
Sbjct: 244 IVTGQDHSFYTYDAKYIDEDGAITSVPAQLPADLTQHLRELSLDAFRALGCEGLARVDFF 303

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             P    V   E+N  PG T +S++P+     G S+  L+  ++E
Sbjct: 304 VRPDMSMVVN-EVNTMPGFTNISMYPKAMEATGISYPALVDRLIE 347


>gi|302190711|ref|ZP_07266965.1| D-alanyl-alanine synthetase A [Lactobacillus iners AB-1]
 gi|312874986|ref|ZP_07735005.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus iners
           LEAF 2053A-b]
 gi|311089731|gb|EFQ48156.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus iners
           LEAF 2053A-b]
          Length = 360

 Score =  134 bits (338), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 99/336 (29%), Positives = 164/336 (48%), Gaps = 51/336 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALE------------DAGFKVSQID----------- 37
           + ++ GG SSE EVS+ SG+    A++            + GF  S  D           
Sbjct: 7   VGLIFGGNSSEYEVSIISGRNIYKAIDKEKYDVYPMWITNTGFLASDADSRKVLEDPSYQ 66

Query: 38  ------VDRSVGLVLAHLKP--DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
                 V     ++    +P  D+ F ++HGN GEDG +Q +L +L+ P+    +LA+A+
Sbjct: 67  IENPHNVTNISNVIELSCRPEIDVFFPIVHGNLGEDGCLQGLLRILDKPFVGDDVLAAAI 126

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYV---------IKPLKGGSS 138
           +MDK  +K +    GVPV   I + RF  +      +S  YV         +KP   GSS
Sbjct: 127 TMDKELNKIMAQRAGVPVADWISIKRFEYNDAKNEKLSYDYVSQKLGTDLFVKPSNQGSS 186

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVP 195
           +GI  +         L +  ++ + D++L+E+ + G E+   V+G+    V+   +I   
Sbjct: 187 VGISHVTSASDYKAALAE--AFKYDDKVLVEETIKGTEVETAVLGNDDAIVSGVGQITNA 244

Query: 196 KSDFYSYELKYSSLNSTHVL--PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
           +  +YSYE KY+  NST  L  PA +P +I + V+R A   + A  C G++R D +    
Sbjct: 245 QGSWYSYENKYND-NSTSKLQIPAALPSEIIETVRRQALKVYHATECSGLARVDSMLSS- 302

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
             KV + E+N  PG T +S++P++    G S+ EL+
Sbjct: 303 DNKVIFNELNSLPGFTNISMYPKLFEQVGISYTELI 338


>gi|311280731|ref|YP_003942962.1| D-alanine/D-alanine ligase [Enterobacter cloacae SCF1]
 gi|308749926|gb|ADO49678.1| D-alanine/D-alanine ligase [Enterobacter cloacae SCF1]
          Length = 366

 Score =  134 bits (338), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 98/347 (28%), Positives = 165/347 (47%), Gaps = 57/347 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR---------SVGLVLAH--- 48
           + V+ GG SSE EVSL S K    A++   F V  + +D+         S  L+  H   
Sbjct: 6   VGVVFGGKSSEHEVSLQSAKNIVEAMDKTRFDVVLLGIDKQGQWHINDASNYLLNDHDPA 65

Query: 49  ---LKP----------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
              L+P                            D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  HIALRPSDVTLAQIPGKESQQLINADSGQPLPAIDVIFPIVHGTLGEDGSLQGMLRMANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR-------FTMDSQHLISPPYVI 130
           P+  S +L SA  MDK  +K+++   G+ + P I + R       F   S+ L  P +V 
Sbjct: 126 PFVGSDVLGSAACMDKDVTKRLLRDAGLSIAPFITLTRANRERVTFAEVSEKLGLPLFV- 184

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190
           KP   GSS+G+  +K +      +  +  ++H  ++++EQ + G E+ C V+G+     +
Sbjct: 185 KPANQGSSVGVSKVKNEAQYQQAVALAFEFDH--KVVVEQGIIGREIECAVLGNDEPQAS 242

Query: 191 EIA--VPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
                V  S+FY+Y+ KY   N    V+PA I   I  +++ +A  A+Q +GC G++R D
Sbjct: 243 TCGEIVLNSEFYAYDTKYIDDNGAQVVVPADISPAINDKIRAIAIQAYQTLGCSGMARVD 302

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
               P    V   EIN  PG T +S++P++   +G  +R L+  +++
Sbjct: 303 VFLTP-ENDVVINEINTLPGFTNISMYPKLWQASGLDYRSLISRLID 348


>gi|302522120|ref|ZP_07274462.1| D-alanylalanine synthetase [Streptomyces sp. SPB78]
 gi|302431015|gb|EFL02831.1| D-alanylalanine synthetase [Streptomyces sp. SPB78]
          Length = 389

 Score =  134 bits (338), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 90/263 (34%), Positives = 138/263 (52%), Gaps = 24/263 (9%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+ F +LHG +GEDG +Q +LEL   PY  +G+LASA+  DK   K++ +S G+ V P +
Sbjct: 125 DVVFPMLHGPYGEDGTLQGLLELSGTPYVGAGVLASAVGQDKEYMKRIFTSFGLAVGPYL 184

Query: 112 LV------------NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
           ++             R   D       P  +KP +GGSS+GI   K D    LD   + +
Sbjct: 185 VIRPREWEQDPDAARRRIADFAGDHGWPLFVKPARGGSSVGI--SKVDGFDGLDEAIAEA 242

Query: 160 WNHGDQLLIEQYVDGIELTCGVM-----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHV 214
             H  + LIE  V G E+ CGV+       AS+      V    +Y +E KY   +++ +
Sbjct: 243 RRHDPKFLIEALVQGREIECGVLEFEDGPRASVPAEIPPVTDHAYYDFEAKYID-SASGL 301

Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL-EINVQPGMTPVSI 273
           +PA +  +   EVQRLA  A +A  C G+ R+DF    L+   F + EIN  PG TP+S+
Sbjct: 302 VPAPLTPEETAEVQRLAVAAFEATSCEGLVRADFF---LTDDGFVINEINTMPGFTPISM 358

Query: 274 FPEMAAYAGYSFRELLLWMVEDA 296
           +P+M   +G  + EL+  +++ A
Sbjct: 359 YPQMWEKSGVGYAELVDRLIQAA 381


>gi|21223916|ref|NP_629695.1| D-alanyl-alanine synthetase A [Streptomyces coelicolor A3(2)]
 gi|289768877|ref|ZP_06528255.1| D-alanyl-alanine synthetase A [Streptomyces lividans TK24]
 gi|6919858|sp|Q9ZBR9|DDL_STRCO RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|4007719|emb|CAA22403.1| D-alanine-D-alanine ligase [Streptomyces coelicolor A3(2)]
 gi|289699076|gb|EFD66505.1| D-alanyl-alanine synthetase A [Streptomyces lividans TK24]
          Length = 389

 Score =  134 bits (338), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 92/263 (34%), Positives = 136/263 (51%), Gaps = 23/263 (8%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+ F VLHG +GEDG +Q +LEL  +PY  +G+LASA+  DK   K V +S G+ V P  
Sbjct: 124 DVVFPVLHGPYGEDGTLQGLLELSGVPYVGAGVLASAVGQDKEYMKAVFTSYGLKVGPYA 183

Query: 112 LV------------NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
           ++             +  +D       P  +KP + GSS+GI   K D    LD     +
Sbjct: 184 VIRPREWEQDRSGARKKIVDFAGEHGWPLFVKPARAGSSIGI--TKVDDLAGLDEAIEEA 241

Query: 160 WNHGDQLLIEQYVDGIELTCGVM----GDASLDVTEIAVPKSD-FYSYELKYSSLNST-H 213
             H  ++L+E  + G E+ CGV+    G  +    EI  P    +Y +E KY  ++ST  
Sbjct: 242 RRHDPKILVEAALRGREIECGVLEFEDGPRASVPAEIPPPSEHAYYDFEAKY--IDSTPG 299

Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273
           ++PA +  +   EVQRLA  A  A  C G+ R+DF        V   EIN  PG TP+S+
Sbjct: 300 IVPAPLTAEETAEVQRLAVAAFDAASCEGLVRADFFLTEDDEFVI-NEINTMPGFTPISM 358

Query: 274 FPEMAAYAGYSFRELLLWMVEDA 296
           +P+M   +G S+ EL+  +V+ A
Sbjct: 359 YPQMWQASGVSYPELVDRLVQAA 381


>gi|326790614|ref|YP_004308435.1| D-alanine/D-alanine ligase [Clostridium lentocellum DSM 5427]
 gi|326541378|gb|ADZ83237.1| D-alanine/D-alanine ligase [Clostridium lentocellum DSM 5427]
          Length = 350

 Score =  134 bits (338), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 79/274 (28%), Positives = 150/274 (54%), Gaps = 25/274 (9%)

Query: 30  GFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
           G+KV+++DV                F +LHG FGEDG +Q +LEL  IP+     LASA+
Sbjct: 91  GYKVTEVDV---------------VFPILHGKFGEDGTIQGLLELSGIPFVGCRTLASAI 135

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL-----ISPPYVIKPLKGGSSLGIIVI 144
            MDK  + ++V+  G+ V  SI++ +   +++       I  P  IKP K GSS+GI  +
Sbjct: 136 CMDKAITHRLVAKEGIKVARSIVLYKEDRNAEQRLEEVDIKLPVYIKPAKSGSSIGITKV 195

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK--SDFYSY 202
              +   L+   S ++   D+++IE+ ++G E+ C ++G+ +  + E+   +   DF+ +
Sbjct: 196 FHFEQ--LEDAISKAFLEDDKVVIEENINGFEVGCAILGNENPMIGEVDEIELMGDFFDF 253

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
             KY   NS   +PA++  ++  ++++ A   ++ + C G++R D +F     ++++ E+
Sbjct: 254 NEKYMLANSKIHMPARVEKEVAHQIKKTAIKIYEILSCTGLARVD-MFLTQGNEIYFNEV 312

Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           N  PG T  S +P+M +  G S+ +++  ++E A
Sbjct: 313 NTLPGFTSSSRYPKMMSSIGLSYTDVITRLIELA 346


>gi|227877871|ref|ZP_03995887.1| D-alanine-D-alanine ligase [Lactobacillus crispatus JV-V01]
 gi|256844272|ref|ZP_05549758.1| D-alanine-D-alanine ligase [Lactobacillus crispatus 125-2-CHN]
 gi|256849329|ref|ZP_05554762.1| D-alanine-D-alanine ligase [Lactobacillus crispatus MV-1A-US]
 gi|262047654|ref|ZP_06020608.1| D-alanine-D-alanine ligase [Lactobacillus crispatus MV-3A-US]
 gi|293380562|ref|ZP_06626621.1| D-ala D-ala ligase [Lactobacillus crispatus 214-1]
 gi|312976971|ref|ZP_07788720.1| D-alanine--D-alanine ligase [Lactobacillus crispatus CTV-05]
 gi|227862533|gb|EEJ70036.1| D-alanine-D-alanine ligase [Lactobacillus crispatus JV-V01]
 gi|256613350|gb|EEU18553.1| D-alanine-D-alanine ligase [Lactobacillus crispatus 125-2-CHN]
 gi|256714105|gb|EEU29093.1| D-alanine-D-alanine ligase [Lactobacillus crispatus MV-1A-US]
 gi|260572054|gb|EEX28620.1| D-alanine-D-alanine ligase [Lactobacillus crispatus MV-3A-US]
 gi|290922876|gb|EFD99819.1| D-ala D-ala ligase [Lactobacillus crispatus 214-1]
 gi|310896299|gb|EFQ45364.1| D-alanine--D-alanine ligase [Lactobacillus crispatus CTV-05]
          Length = 360

 Score =  134 bits (338), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 98/341 (28%), Positives = 158/341 (46%), Gaps = 51/341 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI------------------------ 36
           + ++ GG SSE EVS+ SG+    A++   F V  I                        
Sbjct: 7   VGLIFGGNSSEYEVSIVSGRNIYKAIDKDKFDVHPIWITNEGYFANEEESFKVLDDPSYQ 66

Query: 37  -----DVDRSVGLVLAHLKP--DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
                 V+    L+     P  D+ F ++HGN GEDG++Q +  L++ P+    +L +A+
Sbjct: 67  VKNPHKVNNISNLIELENLPEIDVFFPIVHGNLGEDGVLQGLFRLMDKPFVGDDVLGAAV 126

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPY-----------VIKPLKGGSS 138
           +MDK  +K +    GVPV   I + RF  D +      Y            +KP   GSS
Sbjct: 127 TMDKEFTKILAQRVGVPVADWISIKRFEYDDKKNAKLNYEKVAEKLGRDMFVKPSNQGSS 186

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS---LDVTEIAVP 195
           +G+  +         L +  ++ + D++L+E+ V G E+   V+G+       V +I   
Sbjct: 187 VGVSHVTNADEYTAALKE--AFKYDDKVLVEETVPGTEVETAVLGNDKPIVAGVGQITNA 244

Query: 196 KSDFYSYELKYSSLNSTHVL--PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
           K  FY+YE KY   NST  L  PA +P +I   V+  A   + A  C G++R D +  P 
Sbjct: 245 KGSFYTYENKYDD-NSTSKLQIPADLPQEIIDTVRENARKVYAATECSGMARIDSMLTP- 302

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             KV   E+N  PG T +S++P++   AG  + EL+  ++E
Sbjct: 303 GGKVVLTEVNALPGFTNISMYPKLFEEAGVPYSELITRLIE 343


>gi|123443414|ref|YP_001007387.1| D-alanine--D-alanine ligase A [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122090375|emb|CAL13243.1| D-alanine--D-alanine ligase A [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 366

 Score =  134 bits (338), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 98/354 (27%), Positives = 170/354 (48%), Gaps = 71/354 (20%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------------------- 40
           + V+ GG S+E EVSL S K    A++   F V+ + +D+                    
Sbjct: 6   VGVIFGGKSAEHEVSLQSAKNIVDAIDKEKFDVTLLGIDKQGKWHVNDASNYLLNAENPA 65

Query: 41  ---------SVGLV----------------LAHLKPDLAFNVLHGNFGEDGLVQAILELL 75
                    +V L+                LA L  D+ F ++HG  GEDG +Q +L + 
Sbjct: 66  LISLNHSNKNVALIPGQEHQQLIATDSASALAQL--DVIFPIVHGTLGEDGSLQGLLRMA 123

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYV 129
            IP+  SG++ SA+SMDK  +K+++   G+ + P I + R   D+         +  P  
Sbjct: 124 NIPFVGSGVVGSAVSMDKDITKRLLRDAGLNIAPFITLTRANKDNYRFEQVTAKLGLPLF 183

Query: 130 IKPLKGGSSLGIIVIKK----DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD- 184
           IKP   GSS+G+  ++     +Q++ L      +++   ++L+E  + G E+ C VMG+ 
Sbjct: 184 IKPANQGSSVGVSKVRNAYEYEQAVAL------AFDFDHKVLVESAIVGREIECAVMGND 237

Query: 185 ---ASLDVTEIAVPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
              ASL   E+ +   +FYSY+ KY +   +  ++PA I   +   ++ +A  A +A+ C
Sbjct: 238 NPQASL-CGEVVI-SDEFYSYDTKYINETGAKVIIPASIDSAVSDNIRAVALAAFRALEC 295

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           RG++R D +F      +   EIN  PG T +S++P++    G    EL+  ++E
Sbjct: 296 RGMARVD-VFLTADNTIIINEINTLPGFTNISMYPKLWRATGVGSTELITTLIE 348


>gi|317478570|ref|ZP_07937727.1| D-alanine-D-alanine ligase [Bacteroides sp. 4_1_36]
 gi|316905211|gb|EFV27008.1| D-alanine-D-alanine ligase [Bacteroides sp. 4_1_36]
          Length = 326

 Score =  134 bits (337), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 94/323 (29%), Positives = 159/323 (49%), Gaps = 33/323 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-----------------VDRS-V 42
           +A++ GG +SE  VSL S +   S ++   + +  ++                 VDR+  
Sbjct: 5   IAIVAGGDTSEFHVSLRSAQGIYSFIDKEKYTLYIVEMHGLDWHVQLPDGAKAPVDRNDF 64

Query: 43  GLVLAHLKP--DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
             VL   K   D A+  +HG  GEDG +Q   ++L IPY+  G+LA++L+ DK    Q +
Sbjct: 65  SFVLDGEKVTFDFAYITIHGTPGEDGRLQGYFDMLHIPYSCCGVLAASLTYDKFACNQYL 124

Query: 101 SSCGVPVCPSILVNR----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
              GV +  S+L+         D    I  P  IKP  GGSS G+  +   + I   +  
Sbjct: 125 KGFGVRIAESLLLRGGQSVTDEDVMEKIGLPCFIKPSLGGSSFGVTKVTAKEQIQPAI-- 182

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGV--MGDAS--LDVTEIAVPKSDFYSYELKYSSLNST 212
           + ++    ++++E ++DG E+TCG     D S    +TE+ V  ++++ YE KY+   S 
Sbjct: 183 TKAFAEAQEVVVEAFMDGTEITCGCYKTKDKSVVFPITEV-VSHNEYFDYEAKYNG-ESD 240

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
            + PA+I  D+ + VQ L    +  +G  GI R D++      K+  LE+N  PGMT  S
Sbjct: 241 EITPARISDDLTRRVQTLTSAIYDILGAYGIIRVDYIITE-GEKINLLEVNTTPGMTATS 299

Query: 273 IFPEMAAYAGYSFRELLLWMVED 295
             P+    AG   ++++  ++E+
Sbjct: 300 FIPQQVRAAGMEMKDVMTDIIEN 322


>gi|225022645|ref|ZP_03711837.1| hypothetical protein CORMATOL_02688 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224944553|gb|EEG25762.1| hypothetical protein CORMATOL_02688 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 325

 Score =  134 bits (337), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 77/260 (29%), Positives = 139/260 (53%), Gaps = 15/260 (5%)

Query: 48  HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV 107
           H+  D+ F VLHG +GEDG +Q + EL  +PY  +G+L+SA  MDK  +K+++++ G+PV
Sbjct: 68  HVTVDVIFPVLHGLYGEDGTIQGLFELSGVPYVGTGVLSSACGMDKEYTKKLLAAEGLPV 127

Query: 108 CPSILV---NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164
              +++      T     L+  P  +KP +GGSS+GI  + + + +   L ++  ++   
Sbjct: 128 GKEVILRGEETLTQADCQLLGLPVYVKPARGGSSIGISRVTRWEDMDAALCEARQYDT-- 185

Query: 165 QLLIEQYVDGIELTCGVM--------GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216
           ++++E  + G E+ CGV+              +   +V    FY ++ KY   + + ++P
Sbjct: 186 KVIVESEIIGDEVECGVLEYPDGMVVASVPAQLVNTSVGHEGFYGFDAKYVDGDVSAMIP 245

Query: 217 AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPE 276
           A +     + +Q LA  A QA+ C G++R DF            E+N  PG TP+S++P+
Sbjct: 246 APLDDAATRLIQSLAREAFQALQCSGLARVDFFV--TQAGPVLNEVNTMPGFTPISMYPQ 303

Query: 277 MAAYAGYSFRELLLWMVEDA 296
           + A +G  + ELL  ++  A
Sbjct: 304 VFAASGVPYAELLDTLIARA 323


>gi|295836324|ref|ZP_06823257.1| D-alanine-D-alanine ligase [Streptomyces sp. SPB74]
 gi|197699329|gb|EDY46262.1| D-alanine-D-alanine ligase [Streptomyces sp. SPB74]
          Length = 389

 Score =  134 bits (337), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 90/263 (34%), Positives = 137/263 (52%), Gaps = 24/263 (9%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+ F +LHG +GEDG +Q +LEL   PY  +G+LASA+  DK   K++ +S G+ V P +
Sbjct: 125 DVVFPMLHGPYGEDGTLQGLLELSGTPYVGAGVLASAVGQDKEYMKRIFTSFGLAVGPYL 184

Query: 112 LV------------NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
           ++             R   D       P  +KP +GGSS+GI   K D    LD     +
Sbjct: 185 VIRPREWEQDPEAARRRIADFAGDHGWPLFVKPARGGSSVGI--SKVDGFEGLDEAIEEA 242

Query: 160 WNHGDQLLIEQYVDGIELTCGVM-----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHV 214
             H  + LIE  V G E+ CGV+       ASL      V    +Y +E KY   +++ +
Sbjct: 243 RRHDPKFLIEALVQGREIECGVLEFEDGPRASLPAEIPPVTDHAYYDFEAKYID-SASGL 301

Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL-EINVQPGMTPVSI 273
           +PA +  +   EVQRLA  A +A  C G+ R+DF    L+   F + E+N  PG TP+S+
Sbjct: 302 VPAPLTPEETAEVQRLAVAAFEATSCEGLVRADFF---LTDDGFVINEVNTMPGFTPISM 358

Query: 274 FPEMAAYAGYSFRELLLWMVEDA 296
           +P+M   +G  + EL+  +++ A
Sbjct: 359 YPQMWEKSGVGYAELVDRLIQAA 381


>gi|254967064|gb|ACT97570.1| putative D-alanyl-alanine synthetase A [uncultured organism]
          Length = 344

 Score =  134 bits (337), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 89/322 (27%), Positives = 157/322 (48%), Gaps = 31/322 (9%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKV-----------------SQIDVDR--- 40
           +A++ GG +SE  VSL S +   S ++   + +                 +++ VDR   
Sbjct: 5   IAIVAGGDTSEIVVSLRSAQGIYSFIDKEKYNLYIVEMEGRRWEVQLPDGNKVPVDRNDF 64

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           S       +  D A+  +HG  GEDG +Q   +++ IPY+  G+LA+A++ DK    Q +
Sbjct: 65  SFTNGTEKVVFDFAYITIHGTPGEDGRLQGYFDMMRIPYSCCGVLAAAITYDKFTCNQYL 124

Query: 101 SSCGVPVCPSILVNRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
            + GV +  S+L+ +    S       I  P  IKP  GGSS G+  +K  + I   +++
Sbjct: 125 KAFGVRIAESLLLRQGQSVSDEEVVEKIGLPCFIKPSLGGSSFGVTKVKTKEQIQPAIVK 184

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTH 213
             ++   +++++E ++DG ELTCG        V          ++F+ Y+ KY+      
Sbjct: 185 --AFGEAEEVIVEAFMDGTELTCGCYKTKEKSVIFPPTXXXTHNEFFDYDAKYNG-QVDE 241

Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273
           + PA+I  ++ K VQ L    +  +GC GI R D++      K+  LE+N  PGMT  S 
Sbjct: 242 ITPARISDELTKRVQMLTSAIYDILGCSGIIRVDYIITA-GEKLNLLEVNTTPGMTTTSF 300

Query: 274 FPEMAAYAGYSFRELLLWMVED 295
            P+    AG   ++++  ++E+
Sbjct: 301 IPQQVRAAGLDIKDVMTDIIEN 322


>gi|312194928|ref|YP_004014989.1| D-alanine/D-alanine ligase [Frankia sp. EuI1c]
 gi|311226264|gb|ADP79119.1| D-alanine/D-alanine ligase [Frankia sp. EuI1c]
          Length = 374

 Score =  134 bits (337), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 86/264 (32%), Positives = 139/264 (52%), Gaps = 13/264 (4%)

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           +V   L  L  D+ F VLHG +GEDG +Q +LE+  +PY  SG+ ASA +MDK   K ++
Sbjct: 104 AVAGALGDLDVDVVFPVLHGPYGEDGTIQGLLEMAGLPYVGSGVFASAAAMDKQHMKTLL 163

Query: 101 SSCGVPVCPSILVN---RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
           ++ G+PV P  ++      +   +  +  P  +KP +GGSS+GI   + D    LD    
Sbjct: 164 AAAGLPVGPYAVLRAGETLSEAEKRRLGLPVFVKPARGGSSIGI--SRVDAWADLDTAIK 221

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP-------KSDFYSYELKYSSLN 210
           ++     ++L+E  + G E+ CGV+        E ++P        + FY +  KYSS  
Sbjct: 222 TARESDPKVLVEAAILGREIECGVLDALGGGPPETSLPAEIVVDSAAGFYDFAAKYSSDA 281

Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270
           +   +PA +P  I   V+  A  A QA+ C G++R D +F   + +V   E+N  PG TP
Sbjct: 282 TRLDVPADLPAGIADRVRAAAGAAFQALDCAGLARVD-VFLTAAGEVVLNEVNTMPGFTP 340

Query: 271 VSIFPEMAAYAGYSFRELLLWMVE 294
            S+FP M A +G  +  L+  +++
Sbjct: 341 SSLFPRMWAASGLDYPALVERLIQ 364


>gi|333024204|ref|ZP_08452268.1| putative D-alanyl-alanine synthetase A [Streptomyces sp. Tu6071]
 gi|332744056|gb|EGJ74497.1| putative D-alanyl-alanine synthetase A [Streptomyces sp. Tu6071]
          Length = 345

 Score =  134 bits (337), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 90/263 (34%), Positives = 138/263 (52%), Gaps = 24/263 (9%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+ F +LHG +GEDG +Q +LEL   PY  +G+LASA+  DK   K++ +S G+ V P +
Sbjct: 81  DVVFPMLHGPYGEDGTLQGLLELSGTPYVGAGVLASAVGQDKEYMKRIFTSFGLAVGPYL 140

Query: 112 LV------------NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
           ++             R   D       P  +KP +GGSS+GI   K D    LD   + +
Sbjct: 141 VIRPREWEQDPDAARRRIADFAGDHGWPLFVKPARGGSSVGI--SKVDGFDGLDEAIAEA 198

Query: 160 WNHGDQLLIEQYVDGIELTCGVM-----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHV 214
             H  + LIE  V G E+ CGV+       AS+      V    +Y +E KY   +++ +
Sbjct: 199 RRHDPKFLIEALVQGREIECGVLEFEDGPRASVPAEIPPVTDHAYYDFEAKYID-SASGL 257

Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL-EINVQPGMTPVSI 273
           +PA +  +   EVQRLA  A +A  C G+ R+DF    L+   F + EIN  PG TP+S+
Sbjct: 258 VPAPLTPEETAEVQRLAVAAFEATSCEGLVRADFF---LTDDGFVINEINTMPGFTPISM 314

Query: 274 FPEMAAYAGYSFRELLLWMVEDA 296
           +P+M   +G  + EL+  +++ A
Sbjct: 315 YPQMWEKSGVGYAELVDRLIQAA 337


>gi|259500836|ref|ZP_05743738.1| D-alanine-D-alanine ligase A [Lactobacillus iners DSM 13335]
 gi|259167530|gb|EEW52025.1| D-alanine-D-alanine ligase A [Lactobacillus iners DSM 13335]
          Length = 366

 Score =  134 bits (337), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 99/336 (29%), Positives = 164/336 (48%), Gaps = 51/336 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALE------------DAGFKVSQID----------- 37
           + ++ GG SSE EVS+ SG+    A++            + GF  S  D           
Sbjct: 13  VGLIFGGNSSEYEVSIISGRNIYKAIDKEKYDVYPMWITNTGFLASDADSRKVLEDPSYQ 72

Query: 38  ------VDRSVGLVLAHLKP--DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
                 V     ++    +P  D+ F ++HGN GEDG +Q +L +L+ P+    +LA+A+
Sbjct: 73  IENPHNVTNISNVIELSCRPEIDVFFPIVHGNLGEDGCLQGLLRILDKPFVGDDVLAAAI 132

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYV---------IKPLKGGSS 138
           +MDK  +K +    GVPV   I + RF  +      +S  YV         +KP   GSS
Sbjct: 133 TMDKELNKIMAQRAGVPVADWISIKRFEYNDAKNEKLSYDYVSQKLGTDLFVKPSNQGSS 192

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVP 195
           +GI  +         L +  ++ + D++L+E+ + G E+   V+G+    V+   +I   
Sbjct: 193 VGISHVTSASDYKAALAE--AFKYDDKVLVEETIKGTEVETAVLGNDDAIVSGVGQITNA 250

Query: 196 KSDFYSYELKYSSLNSTHVL--PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
           +  +YSYE KY+  NST  L  PA +P +I + V+R A   + A  C G++R D +    
Sbjct: 251 QGSWYSYENKYND-NSTSKLQIPAALPSEIIETVRRQALKVYHATECSGLARVDSMLSS- 308

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
             KV + E+N  PG T +S++P++    G S+ EL+
Sbjct: 309 DNKVIFNELNSLPGFTNISMYPKLFEQVGISYTELI 344


>gi|238911487|ref|ZP_04655324.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Tennessee str. CDC07-0191]
          Length = 364

 Score =  134 bits (337), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 90/346 (26%), Positives = 168/346 (48%), Gaps = 55/346 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD--------------------- 39
           + ++ GG S+E EVSL S K    A++   F V  + +D                     
Sbjct: 6   VGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGIDKAGQWHVNDAENYLQNADDPA 65

Query: 40  ----RSVGLVLAHL--------------KP----DLAFNVLHGNFGEDGLVQAILELLEI 77
               R   + LA +              +P    D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  HIALRPSAISLAQVPGKHQHQLINAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVIK 131
           P+  S +L+SA  MDK  +K+++   G+ + P I + R    +      +  +  P  +K
Sbjct: 126 PFVGSDVLSSAACMDKDVAKRLLRDAGLNIAPFITLTRTNRHAFSFAEVESRLGLPLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  +  +      +  +  ++H  ++++EQ + G E+ C V+G+ +   + 
Sbjct: 186 PANQGSSVGVSKVTNEAQYQQAVALAFEFDH--KVVVEQGIKGREIECAVLGNDNPQAST 243

Query: 192 IA--VPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               V  S+FY+Y+ KY   N    V+PA+IP ++  +++ +A  A+Q +GC G++R D 
Sbjct: 244 CGEIVLNSEFYAYDTKYIDDNGAQVVVPAQIPSEVNDKIRAIAIQAYQTLGCAGMARVD- 302

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           +F     +V   EIN  PG T +S++P++   +G  + +L+  ++E
Sbjct: 303 VFLTADNEVVINEINTLPGFTNISMYPKLWQASGLGYTDLISRLIE 348


>gi|58424569|gb|AAW73606.1| D-alanine-D-alanine ligase A [Xanthomonas oryzae pv. oryzae
           KACC10331]
          Length = 347

 Score =  134 bits (337), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 82/252 (32%), Positives = 137/252 (54%), Gaps = 12/252 (4%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+ F ++HG  GEDG +Q +L +  +P+  SG+L SA++MDK  +K+V+    + V P +
Sbjct: 80  DVVFPIVHGTLGEDGSLQGLLRMANLPFVGSGVLGSAVAMDKDMAKRVLRDARLAVAPFV 139

Query: 112 LVNRFT---MDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
             +R T    D   LI+    P  +KP   GSS+G+  ++   +    L  + +++H  +
Sbjct: 140 CFDRHTAAHADVDTLIAQLGLPLFVKPANQGSSVGVSQVRTADAFAAALALALAYDH--K 197

Query: 166 LLIEQYVDGIELTCGVMGDA--SLDVTEIAVPKSDFYSYELKYSSLNSTH-VLPAKIPLD 222
           +L+E  V G E+ C V+G+A     V    V    FYSY  KY S +    V+PA I   
Sbjct: 198 VLVEAAVAGREIECAVLGNAVPHASVCGEVVVHDAFYSYATKYISEHGAEIVIPADIDAQ 257

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAG 282
             + +Q++A  A+QA+GC G++R D       R V   E+N  PG T +S++P++   +G
Sbjct: 258 TQQRIQQIAVQAYQALGCAGMARVDVFLCADGRIVIN-EVNTLPGFTRISMYPKLWQASG 316

Query: 283 YSFRELLLWMVE 294
             +R L+  ++E
Sbjct: 317 LDYRGLITRLIE 328


>gi|227495857|ref|ZP_03926168.1| D-alanine--D-alanine ligase [Actinomyces urogenitalis DSM 15434]
 gi|226834614|gb|EEH66997.1| D-alanine--D-alanine ligase [Actinomyces urogenitalis DSM 15434]
          Length = 404

 Score =  134 bits (337), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 79/262 (30%), Positives = 137/262 (52%), Gaps = 22/262 (8%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+   +LHG +GEDG +Q +LE+L+IPY   G+LASA  MDK  +K ++++ G+P    +
Sbjct: 135 DVVLPLLHGPYGEDGTIQGMLEMLDIPYVGCGVLASAAGMDKQVTKVLLNAAGIPTAQHV 194

Query: 112 LVNRFTMDSQH--------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
           +V+    DS+          ++ P  +KP + GSSLGI  +++ + +P  +  +   +  
Sbjct: 195 VVHPHRWDSERELILDACEALTYPLFVKPARAGSSLGITKVERREDLPAAIEAAREVD-- 252

Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVP----------KSDFYSYELKYSSLNSTH 213
            ++L+E  V+G E+   V+         +A P            +FY YE KY + ++  
Sbjct: 253 PKVLVESGVEGREVEVAVLDGHHGAAPRVAEPGEIVMDASHGAGEFYDYETKYLAHDAVQ 312

Query: 214 -VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
            V PA++     + ++  A  A +A+G  G+ R DF   P    V   E+N  PG TP S
Sbjct: 313 MVCPARVSHQESELLKETAARAFEALGGEGLMRVDFFLTPRGEAVVN-EVNTMPGFTPFS 371

Query: 273 IFPEMAAYAGYSFRELLLWMVE 294
           ++P M   +G S+ +L+  ++E
Sbjct: 372 MYPYMWQVSGLSYTDLVSELIE 393


>gi|153853961|ref|ZP_01995294.1| hypothetical protein DORLON_01285 [Dorea longicatena DSM 13814]
 gi|149753343|gb|EDM63274.1| hypothetical protein DORLON_01285 [Dorea longicatena DSM 13814]
          Length = 354

 Score =  134 bits (337), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 98/349 (28%), Positives = 161/349 (46%), Gaps = 59/349 (16%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------------DRSVGLV-- 45
           VL GG+S ER+VSL SG      L + G +   +DV               DR  G +  
Sbjct: 5   VLAGGLSPERDVSLLSGAGICKTLREMGHQAFLLDVFFGLPCDSDKLEEVFDRPDGGLEI 64

Query: 46  -------------LAHLKPD------------------LAFNVLHGNFGEDGLVQAILEL 74
                        L   +PD                  + F  LHG+ GE+G +QA  + 
Sbjct: 65  SKGISTSVPDLDALRKSRPDQSPSEIGPNVIELCQMADITFMALHGSIGENGKLQATFDN 124

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---QHLISPPYVIK 131
           L I YT    L   LSM+K+ +KQ+  + GVP      +   T D+   +     P V+K
Sbjct: 125 LGIKYTGPNSLGCTLSMNKLVTKQIFKTSGVPTPRGTSLTSKTKDTPLDELGYYLPLVVK 184

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+ +   ++     + +S   ++ D+++IE ++ G E  CG++   +L + E
Sbjct: 185 PCSNGSSIGVYICHTEEEYYDAIHKSFDVDNTDEVVIEPFIKGREFACGILAGKALPLVE 244

Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE----VQRLAFLAHQAIGCRGISRSD 247
           I VPK   + Y  KY +  ++ + P   P+ + +E    +QR    A +A+     SR+D
Sbjct: 245 I-VPKDGLFDYANKYQAGGASEICP---PVSLDEETQELIQRAGERAFEALRMDVYSRAD 300

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           F+      + + LE+N  PGMT  S+ P+ A  AGY + EL   +++++
Sbjct: 301 FIVSDADGEFYCLEMNALPGMTAASLLPKAAKAAGYEYSELCEAIIQES 349


>gi|323965327|gb|EGB60785.1| D-alanine-D-alanine ligase [Escherichia coli M863]
 gi|327254694|gb|EGE66310.1| D-alanine--D-alanine ligase [Escherichia coli STEC_7v]
          Length = 364

 Score =  134 bits (337), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 92/346 (26%), Positives = 169/346 (48%), Gaps = 55/346 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR--------SVGLVL-----A 47
           + ++ GG S+E EVSL S K    A++ + F V  + +D+        +   +L     A
Sbjct: 6   VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDANNYLLNADDPA 65

Query: 48  H--LKP----------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
           H  L+P                            D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  HIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVIK 131
           P+  S +LASA  MDK  +K+++   G+ + P I + R    +      +  +  P  +K
Sbjct: 126 PFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRTNRQNISFAEVKSKLGLPLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  +  ++   + +  +  ++H  ++++EQ + G E+ C V+G+ +   + 
Sbjct: 186 PANQGSSVGVSKVTSEEEYAIAVDLAFEFDH--KVIVEQGIKGREIECAVLGNDNPQAST 243

Query: 192 IA--VPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               V  SDFY+Y+ KY   +    V+PA I  +I   ++ +A  A+Q +GC G++R D 
Sbjct: 244 CGEIVLTSDFYAYDTKYIDEDGAKVVVPAAITPEINDMIRAIAVQAYQTLGCAGMARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
              P   +V   EIN  PG T +S++P++   +G  + +L+  ++E
Sbjct: 304 FLTP-ENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIE 348


>gi|305681869|ref|ZP_07404673.1| D-ala D-ala ligase N-terminal domain protein [Corynebacterium
           matruchotii ATCC 14266]
 gi|305658342|gb|EFM47845.1| D-ala D-ala ligase N-terminal domain protein [Corynebacterium
           matruchotii ATCC 14266]
          Length = 356

 Score =  134 bits (337), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 77/260 (29%), Positives = 139/260 (53%), Gaps = 15/260 (5%)

Query: 48  HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV 107
           H+  D+ F VLHG +GEDG +Q + EL  +PY  +G+L+SA  MDK  +K+++++ G+PV
Sbjct: 99  HVTVDVIFPVLHGLYGEDGTIQGLFELSGVPYVGTGVLSSACGMDKEYTKKLLAAEGLPV 158

Query: 108 CPSILVN---RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164
              +++      T     L+  P  +KP +GGSS+GI  + + + +   L ++  ++   
Sbjct: 159 GKEVILRGEETLTQADCQLLGLPVYVKPARGGSSIGISRVTRWEDMDAALREARQYD--T 216

Query: 165 QLLIEQYVDGIELTCGVM--------GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216
           ++++E  + G E+ CGV+              +   +V    FY ++ KY   + + ++P
Sbjct: 217 KVIVESEIIGDEVECGVLEYPDGTVVASVPAQLVNTSVGHEGFYGFDAKYVDGDVSAMIP 276

Query: 217 AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPE 276
           A +     + +Q LA  A QA+ C G++R DF            E+N  PG TP+S++P+
Sbjct: 277 APLDDAATRLIQSLAREAFQALQCSGLARVDFFV--TQAGPVLNEVNTMPGFTPISMYPQ 334

Query: 277 MAAYAGYSFRELLLWMVEDA 296
           + A +G  + ELL  ++  A
Sbjct: 335 VFAASGVPYAELLDTLIARA 354


>gi|160286234|pdb|2YZG|A Chain A, Crystal Structure Of D-Ala:d-Ala Ligase From Thermus
           Thermophilus Hb8
 gi|160286235|pdb|2YZG|B Chain B, Crystal Structure Of D-Ala:d-Ala Ligase From Thermus
           Thermophilus Hb8
 gi|160286236|pdb|2YZG|C Chain C, Crystal Structure Of D-Ala:d-Ala Ligase From Thermus
           Thermophilus Hb8
          Length = 319

 Score =  134 bits (337), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 83/246 (33%), Positives = 136/246 (55%), Gaps = 8/246 (3%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+ F +LHG FGEDG VQ  LELL  PY  +G+ ASAL  DK  SK+V++  GVPV P +
Sbjct: 75  DVVFPLLHGRFGEDGTVQGFLELLGKPYVGAGVAASALCXDKDLSKRVLAQAGVPVVPWV 134

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
            V +           P+ +KP   GSS+GI  +++ Q   L+   + ++ + ++ ++E+ 
Sbjct: 135 AVRKGEPPVVPFDP-PFFVKPANTGSSVGISRVERFQD--LEAALALAFRYDEKAVVEKA 191

Query: 172 VDGI-ELTCGVMGDASLDVTEIAVPKSD--FYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           +  + EL  GV+G+   + + +   + +  FY YE KY+   +  ++PA +     + VQ
Sbjct: 192 LSPVRELEVGVLGNVFGEASPVGEVRYEAPFYDYETKYTPGRAELLIPAPLDPGTQETVQ 251

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
            LA  A++ +G RG +R DF       +++  E+N  PG TP S +P +    G ++ EL
Sbjct: 252 ELALKAYKVLGVRGXARVDFFL--AEGELYLNELNTIPGFTPTSXYPRLFEAGGVAYPEL 309

Query: 289 LLWMVE 294
           L  +VE
Sbjct: 310 LRRLVE 315


>gi|313115115|ref|ZP_07800602.1| D-ala D-ala ligase [Faecalibacterium cf. prausnitzii KLE1255]
 gi|310622555|gb|EFQ06023.1| D-ala D-ala ligase [Faecalibacterium cf. prausnitzii KLE1255]
          Length = 363

 Score =  134 bits (337), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 80/251 (31%), Positives = 133/251 (52%), Gaps = 17/251 (6%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+   VLHG +GEDG VQ +LEL  IPY   G+LASA+ MDK  +  +  + GVP    +
Sbjct: 101 DVVIPVLHGLWGEDGTVQGLLELAGIPYVGCGVLASAVCMDKAVANALFEANGVPHTRWL 160

Query: 112 LVNRFTMDS---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIP--LDLLQSSSW 160
             +R+ ++S         +  +  P  +KP   GSS+GI  +     +   +DL    + 
Sbjct: 161 AADRWEIESDLEGVCDGVEKKLGWPVFVKPANAGSSVGISKVSSRDELKKAIDL----AL 216

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA--VPKSDFYSYELKYSSLNSTHVLPAK 218
            +  +++ E +VDG E+ C V+G      T     +  ++FY+Y+ KY +  S  V+PA 
Sbjct: 217 ENDRKVVFEAFVDGQEVECAVIGSDPAVATRPGEILAGAEFYTYDDKYKNGVSQTVIPAH 276

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278
           +P     EV+  A +A+ A+ C G++R DF  +  + +V   EIN  PG T +S++P++ 
Sbjct: 277 LPEAKLDEVKTYAAIAYTALNCEGLARCDFFVEKGTGRVLINEINTFPGFTSISMYPKLM 336

Query: 279 AYAGYSFRELL 289
            + G    +L+
Sbjct: 337 EHEGLPVPQLI 347


>gi|323170460|gb|EFZ56110.1| D-alanine--D-alanine ligase [Escherichia coli LT-68]
          Length = 364

 Score =  134 bits (337), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 94/349 (26%), Positives = 172/349 (49%), Gaps = 61/349 (17%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR--------SVGLVL-----A 47
           + ++ GG S+E EVSL S K    A++ + F V  + +D+        +   +L     A
Sbjct: 6   VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPA 65

Query: 48  H--LKP----------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
           H  L+P                            D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  HIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS---------PPY 128
           P+  S +LASA  MDK  +K+++   G+ + P I + R    ++H IS          P 
Sbjct: 126 PFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRA---NRHNISFAEVESKLGLPL 182

Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD 188
            +KP   GSS+G+  +  ++   + +  +  ++H  ++++EQ + G E+ C V+G+ +  
Sbjct: 183 FVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDH--KVIVEQGIKGREIECAVLGNDNPQ 240

Query: 189 VTEIA--VPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
            +     V  SDFY+Y+ KY   +    V+P+ I  +I  +++ +A  A+Q +GC G++R
Sbjct: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPSAIAPEINDKIRAIAVQAYQTLGCAGMAR 300

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            D    P   +V   EIN  PG T +S++P++   +G  + +L+  ++E
Sbjct: 301 VDVFLTP-ENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIE 348


>gi|159029500|emb|CAO87648.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 352

 Score =  134 bits (337), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 86/259 (33%), Positives = 136/259 (52%), Gaps = 20/259 (7%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           ++ F +LHG  GEDG +Q +L L+ + +  SG+L S L MDK+  K   ++ G+P     
Sbjct: 90  EVWFPILHGPNGEDGTLQGLLTLMRVAFVGSGVLGSCLGMDKIAMKTAFAAAGLPQVKYK 149

Query: 112 LVNRFTMDSQHLISP------------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
            + R  + S   + P            P  IKP   GSS+GI   +  Q +   L  ++S
Sbjct: 150 AITRSQVWSNPCVFPQLCDQIAEEIGYPCFIKPANLGSSVGISKARNQQELEAALDSAAS 209

Query: 160 WNHGDQLLIEQYVDGIELTCGVMGD----ASLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215
           ++   ++++E  V   E+ C V+G+    ASL V EI    SDFY YE KY+   S+ V+
Sbjct: 210 YDR--RIIVEAGVTAREIECAVLGNDNPQASL-VGEITF-DSDFYDYETKYTDGRSSMVI 265

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275
           PA IP  I  +V+ +A  A +A+   G+SR DF +   + +V   EIN  PG T  S++P
Sbjct: 266 PANIPDKIADQVREMAVEAFKAVDAAGLSRVDFFYVEKTGEVLINEINTLPGFTNFSMYP 325

Query: 276 EMAAYAGYSFRELLLWMVE 294
           ++    G  F +L+  +V+
Sbjct: 326 QLWKATGLEFDQLVDKLVQ 344


>gi|298243533|ref|ZP_06967340.1| D-alanine/D-alanine ligase [Ktedonobacter racemifer DSM 44963]
 gi|297556587|gb|EFH90451.1| D-alanine/D-alanine ligase [Ktedonobacter racemifer DSM 44963]
          Length = 382

 Score =  134 bits (337), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 77/254 (30%), Positives = 141/254 (55%), Gaps = 13/254 (5%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+ F V+HG  GEDG +Q +L++ ++PY   G+L SAL MDK + K +    G+PV   +
Sbjct: 113 DVIFPVMHGTTGEDGALQGMLDMADVPYVGCGVLGSALGMDKEKMKMIFERAGLPVGEYL 172

Query: 112 LV--NRFTMDSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
           +   N++  D + +++        P  +KP+  GSS+GI        +   +  ++ ++ 
Sbjct: 173 VYRRNQWERDPESILNAIEEQLNYPCFVKPVNLGSSVGINKAHDRAELVHAINVAAEYDR 232

Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVTEIA--VPKSDFYSYELKYSSLNSTHVLPAKIP 220
             +++IE+ ++  E  C V+G+    V+ +   VP ++FY Y+ KY    S  + PA+I 
Sbjct: 233 --KVIIERNINCREFECAVLGNDEPIVSVMGEIVPSNEFYDYKAKYVDGKSQVITPAEIS 290

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280
            ++ +E++R A +A  ++   G+SR DF  +  + KV+  E+N  PG T VS++P +   
Sbjct: 291 QELSQEMRRQALIAFTSLDLSGLSRIDFFLEKETNKVYINEVNTLPGFTQVSMYPMLWEA 350

Query: 281 AGYSFRELLLWMVE 294
           +G  + EL+  +VE
Sbjct: 351 SGIPYPELIDRLVE 364


>gi|326800470|ref|YP_004318289.1| D-alanine--D-alanine ligase [Sphingobacterium sp. 21]
 gi|326551234|gb|ADZ79619.1| D-alanine--D-alanine ligase [Sphingobacterium sp. 21]
          Length = 333

 Score =  134 bits (337), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 93/332 (28%), Positives = 167/332 (50%), Gaps = 42/332 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI-----------------DVDR--- 40
           +A++ GG + E E+SL S       L+ + F V +I                 +V+R   
Sbjct: 5   IALITGGFTGEIEISLKSAAFVEQKLQTSRFDVYKIILTPESWYHVDDAGIKHEVNRNDF 64

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           ++ L    +K DLAF ++HG+ GEDG +Q  L+++ + YT    L SAL+M+K  +K ++
Sbjct: 65  TLSLKDGLVKFDLAFIMIHGSPGEDGRLQGYLDMIGLKYTSCDTLTSALTMNKAYTKSLL 124

Query: 101 SSC-GVPVCPSILVNRFT-----MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154
               G+ + PS+ ++  T     ++ ++ +  PY +KP  GGSS+G+  +K+     LD 
Sbjct: 125 QGIDGLYLAPSVCLSPATRAVSEINVKNELKLPYFVKPNGGGSSIGMTKVKQ-----LDE 179

Query: 155 LQSS------SWNHGDQLLIEQYVDGIELTCGVMGDAS----LDVTEIAVPKSDFYSYEL 204
           L S+      + N G Q+L+E++V G E + G+    +    L  TE+ +   +F+ +E 
Sbjct: 180 LSSAIDRALGTENAGKQVLVEEFVSGREFSVGIYNSKAGLKVLPATEV-ITTREFFDFEA 238

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           KY    +  + PA +  +    V++L    +  + C+G+ R DF  +  + K +++EIN 
Sbjct: 239 KYIPGLTKEITPADLTNEQQGRVEQLVKEVYIRLNCKGLVRIDFFLERETDKFYFIEINT 298

Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            PG T  S  P+    AG    +    ++E A
Sbjct: 299 IPGQTETSFIPQQVRAAGLQETDFYTELIEQA 330


>gi|256379981|ref|YP_003103641.1| D-alanyl-alanine synthetase A [Actinosynnema mirum DSM 43827]
 gi|255924284|gb|ACU39795.1| D-alanine/D-alanine ligase [Actinosynnema mirum DSM 43827]
          Length = 355

 Score =  134 bits (337), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 104/343 (30%), Positives = 162/343 (47%), Gaps = 50/343 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           +AV+ GG SSE  VS  S  +  + L+   F+V  + + R    V               
Sbjct: 8   VAVVFGGRSSEHTVSCVSAGSVLAHLDRERFEVVPVGITRQGAWVVGSGDLAALEIRDRQ 67

Query: 46  --------------LAHLKPDLA-------FNVLHGNFGEDGLVQAILELLEIPYTHSGI 84
                         L  + PD A       F +LHG +GEDG VQ +LEL ++PY   G+
Sbjct: 68  MPTVDALVPVSGGELTTVSPDSALDGVDVVFPLLHGAWGEDGTVQGLLELADLPYVGPGV 127

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVNR----FTMDSQHLISPPYVIKPLKGGSSLG 140
           LASA +MDK  +K ++ + G+ V    ++ R     +   +  +  P  +KP + GSS+G
Sbjct: 128 LASAAAMDKEFTKTILRAAGLEVGSFAVLRRDQATLSEADRDRLGLPLFVKPARAGSSVG 187

Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG------DASLDVT-EIA 193
           I   K      LD   + +     +++IE  V G E+ CGV+       +ASL     + 
Sbjct: 188 I--TKVTDWADLDAAIAFARQTDPKVIIEAAVTGREVECGVLELPDGRVEASLPAELRVV 245

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
               D+Y ++ KY        +PAK+  D  + ++ LA  A +A+ C+G++R DF F   
Sbjct: 246 GGGVDWYDFDAKYLDDVCEFDIPAKLADDTTERLRALAVEAFRALDCQGLARVDF-FVTE 304

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              +   EIN  PG TP+S++P M    G S+R+LL  +VE A
Sbjct: 305 DGGLVVNEINTMPGFTPISMYPRMWEVTGTSYRDLLTTLVETA 347


>gi|168786212|ref|ZP_02811219.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str. EC869]
 gi|261223856|ref|ZP_05938137.1| D-alanine-D-alanine ligase A [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261256064|ref|ZP_05948597.1| D-alanine-D-alanine ligase A [Escherichia coli O157:H7 str.
           FRIK966]
 gi|189373636|gb|EDU92052.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str. EC869]
          Length = 364

 Score =  134 bits (337), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 92/346 (26%), Positives = 169/346 (48%), Gaps = 55/346 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR--------SVGLVL-----A 47
           + ++ GG S+E EVSL S K    A++ + F V  + +D+        +   +L     A
Sbjct: 6   VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPA 65

Query: 48  H--LKP----------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
           H  L+P                            D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  HIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVIK 131
           P+  S +LASA  MDK  +K+++   G+ + P I + R    +      +  +  P  +K
Sbjct: 126 PFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  +  ++   + +  +  ++H  ++++EQ   G E+ C V+G+ +   + 
Sbjct: 186 PANQGSSVGVSKVTSEEQYAIAVDLAFEFDH--KVIVEQGFKGREIECAVLGNDNPQAST 243

Query: 192 IA--VPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               V  SDFY+Y+ KY   +    V+PA I  +I  +++ +A  A+Q +GC G++R D 
Sbjct: 244 CGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
              P   +V   EIN  PG T +S++P++   +G  + +L+  ++E
Sbjct: 304 FLTP-ENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIE 348


>gi|146310511|ref|YP_001175585.1| D-alanyl-alanine synthetase A [Enterobacter sp. 638]
 gi|145317387|gb|ABP59534.1| D-alanine--D-alanine ligase [Enterobacter sp. 638]
          Length = 366

 Score =  134 bits (337), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 95/347 (27%), Positives = 166/347 (47%), Gaps = 57/347 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKV--------------------------- 33
           + ++ GG S+E EVSL S K    A++ + F V                           
Sbjct: 6   VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVNDASQYLLNADDPA 65

Query: 34  ------SQIDVDRSVGLVLAHL----------KPDLAFNVLHGNFGEDGLVQAILELLEI 77
                 S+I V    G++   L          + D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  HIALNPSEISVATVPGVIHGQLINAGNAQTLAQIDVIFPIVHGTLGEDGSLQGMLRMANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP-------PYVI 130
           P+  S +L SA  MDK  +K+++   G+ + P + + R   D QH  +        P  +
Sbjct: 126 PFVGSDVLGSAACMDKDVTKRLLRDAGLNIAPFVTLTRANRD-QHSFAQITAQLGLPLFV 184

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190
           KP   GSS+G+  +  +      +  +  ++H  ++++EQ + G E+ C V+G+     +
Sbjct: 185 KPANQGSSVGVSKVTSEAQFADAVRLAFEFDH--KVVVEQGIKGREIECAVLGNDFPQAS 242

Query: 191 EIA--VPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
                V  SDFYSY+ KY     +  V+PA +  +I  +++ +A  A+QA+GC G++R D
Sbjct: 243 TCGEVVLNSDFYSYDTKYIDDKGAQVVVPAVLDPEINDKIRAIAIEAYQALGCGGMARVD 302

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            +F      V   EIN  PG T +S++P++   +G S+ EL+  ++E
Sbjct: 303 -VFLTAENDVIINEINTLPGFTNISMYPKLWQASGISYPELITRLIE 348


>gi|220927741|ref|YP_002504650.1| D-alanyl-alanine synthetase A [Clostridium cellulolyticum H10]
 gi|254767725|sp|B8I590|DDL_CLOCE RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|219998069|gb|ACL74670.1| D-alanine/D-alanine ligase [Clostridium cellulolyticum H10]
          Length = 376

 Score =  134 bits (337), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 88/291 (30%), Positives = 156/291 (53%), Gaps = 18/291 (6%)

Query: 20  KACASALEDAGFKVSQIDVDRSVGLVL-AHLKP--DLAFNVLHGNFGEDGLVQAILELLE 76
           K    +L  AG   S I    SV  ++  ++K   D+ F VLHG  GEDG +Q + EL  
Sbjct: 70  KKPVESLSQAGISSSGITTVNSVRQIMPGNVKAPIDVIFPVLHGCNGEDGTIQGLFELAG 129

Query: 77  IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPP 127
           IPY   G+L SA+ MDK  +K +    G+P    ++ NR  + +         +  ++ P
Sbjct: 130 IPYVGCGVLGSAVGMDKAYTKIIFEKEGLPQGDYLVFNRKQVYNRIEDVVAQIEGRLTYP 189

Query: 128 YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL 187
             +KP   GSS+G+      +S+ +  L  ++ N   ++L+E++++G E+ C V+G+ + 
Sbjct: 190 CFVKPSNAGSSVGVNKASDRESL-VKALNIAAKND-RRILVEEFINGREIECAVLGNDNP 247

Query: 188 DVTEIA--VPKSDFYSYELKYSSLNSTH-VLPA-KIPLDIYKEVQRLAFLAHQAIGCRGI 243
             + +   VP +DFY YE KY   +S+  V+PA  +  +  ++++  A  A + + C G+
Sbjct: 248 VASTVGEVVPCNDFYDYEAKYQVGDSSKVVIPAPNLSKETVEKIREYAVRAFKCLDCAGL 307

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           SR DF     + +++  EIN  PG T +S++P++ A +G  + EL+  ++E
Sbjct: 308 SRVDFFVHKETGEIYINEINTLPGFTQISMYPKLWAASGIPYSELINKLIE 358


>gi|62178991|ref|YP_215408.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|161615441|ref|YP_001589406.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Paratyphi B str. SPB7]
 gi|62126624|gb|AAX64327.1| D-alanine-D-alanine ligase A [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|161364805|gb|ABX68573.1| hypothetical protein SPAB_03212 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|322713448|gb|EFZ05019.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
          Length = 364

 Score =  134 bits (337), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 90/346 (26%), Positives = 168/346 (48%), Gaps = 55/346 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD--------------------- 39
           + ++ GG S+E EVSL S K    A++   F V  + +D                     
Sbjct: 6   VGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGIDKAGQWHVNDAENYLQNADDPA 65

Query: 40  ----RSVGLVLAHL--------------KP----DLAFNVLHGNFGEDGLVQAILELLEI 77
               R   + LA +              +P    D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  HIALRPSAISLAQVPGKHQHQLINAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVIK 131
           P+  S +L+SA  MDK  +K+++   G+ + P I + R    +      +  +  P  +K
Sbjct: 126 PFVGSDVLSSAACMDKDVAKRLLRDAGLNIAPFITLTRTNRHAFSFAEVESRLGLPLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  +  +      +  +  ++H  ++++EQ + G E+ C V+G+ +   + 
Sbjct: 186 PANQGSSVGVSKVANEAQYQQAVALAFEFDH--KVVVEQGIKGREIECAVLGNDNPQAST 243

Query: 192 IA--VPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               V  S+FY+Y+ KY   N    V+PA+IP ++  +++ +A  A+Q +GC G++R D 
Sbjct: 244 CGEIVLNSEFYAYDTKYIDDNGAQVVVPAQIPSEVNDKIRAIAIQAYQTLGCAGMARVD- 302

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           +F     +V   EIN  PG T +S++P++   +G  + +L+  ++E
Sbjct: 303 VFLTADNEVVINEINTLPGFTNISMYPKLWQASGLGYTDLISRLIE 348


>gi|238759710|ref|ZP_04620869.1| D-alanine--D-alanine ligase [Yersinia aldovae ATCC 35236]
 gi|238702036|gb|EEP94594.1| D-alanine--D-alanine ligase [Yersinia aldovae ATCC 35236]
          Length = 361

 Score =  134 bits (337), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 95/346 (27%), Positives = 163/346 (47%), Gaps = 59/346 (17%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR---------------------- 40
           ++ GG S+E EVSL S K    A++   F V+ + +D+                      
Sbjct: 1   MIFGGKSAEHEVSLQSAKNIVEAIDKEKFDVTLLGIDKQGQWHVNDVSNYLLNEENPALI 60

Query: 41  -------SVGLV----------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEI 77
                  +V L+                LA L  D+ F ++HG  GEDG +Q +L ++ I
Sbjct: 61  SLNHSNKNVALIPGQQRQQLIAADNGSALAQL--DVIFPIVHGTLGEDGSLQGLLRMVNI 118

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIK 131
           P+  +G++ SA+SMDK  +K+++   G+ V P I + R   +          +  P  IK
Sbjct: 119 PFVGAGVVGSAVSMDKDMTKRLLRDAGLNVAPFITLTRTNKNKYRFEAITAKLGLPLFIK 178

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG--DASLDV 189
           P   GSS+G+  ++ +      +  +  ++H  ++L+E  + G EL C V+G  D    V
Sbjct: 179 PANQGSSVGVSKVRNEDEYHQAIALAFDFDH--KVLVESAIVGRELECAVLGNDDPQASV 236

Query: 190 TEIAVPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               V   +FYSYE KY +   +  V+PA I       ++ +A  A +A+ C G++R D 
Sbjct: 237 CGEVVISDEFYSYETKYINETGAQVVIPAVIDNAASLRIRTVALEAFRALECLGMARVDV 296

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
              P   +V   E+N  PG T +S++P++    G S+ +L+  ++E
Sbjct: 297 FLTP-DNEVIVNEVNTLPGFTNISMYPKLWRATGVSYTQLITTLIE 341


>gi|16759358|ref|NP_454975.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|16763760|ref|NP_459375.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|29142870|ref|NP_806212.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|167992222|ref|ZP_02573320.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|168232345|ref|ZP_02657403.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|168237486|ref|ZP_02662544.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|168261195|ref|ZP_02683168.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|168819018|ref|ZP_02831018.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|194446690|ref|YP_002039619.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194472780|ref|ZP_03078764.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|194735047|ref|YP_002113409.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197249513|ref|YP_002145360.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|200390819|ref|ZP_03217430.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|204926723|ref|ZP_03217925.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|213161233|ref|ZP_03346943.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Typhi str. E00-7866]
 gi|213427803|ref|ZP_03360553.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Typhi str. E02-1180]
 gi|213582565|ref|ZP_03364391.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-0664]
 gi|213622190|ref|ZP_03374973.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
 gi|213647649|ref|ZP_03377702.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Typhi str. J185]
 gi|289828466|ref|ZP_06546324.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-3139]
 gi|60392163|sp|P0A1F0|DDLA_SALTY RecName: Full=D-alanine--D-alanine ligase A; AltName:
           Full=D-Ala-D-Ala ligase A; AltName: Full=D-alanylalanine
           synthetase A
 gi|60392164|sp|P0A1F1|DDLA_SALTI RecName: Full=D-alanine--D-alanine ligase A; AltName:
           Full=D-Ala-D-Ala ligase A; AltName: Full=D-alanylalanine
           synthetase A
 gi|25293549|pir||AC0549 D-alanine,D-alanine ligase A [imported] - Salmonella enterica
           subsp. enterica serovar Typhi (strain CT18)
 gi|256032847|pdb|3I12|A Chain A, The Crystal Structure Of The D-Alanyl-Alanine Synthetase A
           From Salmonella Enterica Subsp. Enterica Serovar
           Typhimurium Str. Lt2
 gi|256032848|pdb|3I12|B Chain B, The Crystal Structure Of The D-Alanyl-Alanine Synthetase A
           From Salmonella Enterica Subsp. Enterica Serovar
           Typhimurium Str. Lt2
 gi|256032849|pdb|3I12|C Chain C, The Crystal Structure Of The D-Alanyl-Alanine Synthetase A
           From Salmonella Enterica Subsp. Enterica Serovar
           Typhimurium Str. Lt2
 gi|256032850|pdb|3I12|D Chain D, The Crystal Structure Of The D-Alanyl-Alanine Synthetase A
           From Salmonella Enterica Subsp. Enterica Serovar
           Typhimurium Str. Lt2
 gi|153943|gb|AAA27056.1| D-alanine:D-alanine ligase (EC 6.3.2.4) [Salmonella enterica subsp.
           enterica serovar Typhimurium]
 gi|16418883|gb|AAL19334.1| D-alanine-D-alanine ligase A [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|16501649|emb|CAD08835.1| D-alanine:D-alanine ligase A [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29138502|gb|AAO70072.1| D-alanine:D-alanine ligase A [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|194405353|gb|ACF65575.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194459144|gb|EDX47983.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|194710549|gb|ACF89770.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197213216|gb|ACH50613.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|197289552|gb|EDY28915.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|199603264|gb|EDZ01810.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|204323388|gb|EDZ08583.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|205329453|gb|EDZ16217.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|205333511|gb|EDZ20275.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|205344117|gb|EDZ30881.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|205349721|gb|EDZ36352.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|261245663|emb|CBG23459.1| D-alanine:D-alanine ligase A [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|267992083|gb|ACY86968.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
 gi|301156992|emb|CBW16475.1| D-alanine:D-alanine ligase A [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|312911411|dbj|BAJ35385.1| D-alanine--D-alanine ligase A [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
 gi|320084652|emb|CBY94443.1| D-alanine-D-alanine ligase A [Salmonella enterica subsp. enterica
           serovar Weltevreden str. 2007-60-3289-1]
 gi|321225102|gb|EFX50163.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. TN061786]
 gi|323128694|gb|ADX16124.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 4/74]
 gi|332987328|gb|AEF06311.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Typhimurium str. UK-1]
          Length = 364

 Score =  134 bits (337), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 90/346 (26%), Positives = 168/346 (48%), Gaps = 55/346 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD--------------------- 39
           + ++ GG S+E EVSL S K    A++   F V  + +D                     
Sbjct: 6   VGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGIDKAGQWHVNDAENYLQNADDPA 65

Query: 40  ----RSVGLVLAHL--------------KP----DLAFNVLHGNFGEDGLVQAILELLEI 77
               R   + LA +              +P    D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  HIALRPSAISLAQVPGKHQHQLINAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVIK 131
           P+  S +L+SA  MDK  +K+++   G+ + P I + R    +      +  +  P  +K
Sbjct: 126 PFVGSDVLSSAACMDKDVAKRLLRDAGLNIAPFITLTRTNRHAFSFAEVESRLGLPLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  +  +      +  +  ++H  ++++EQ + G E+ C V+G+ +   + 
Sbjct: 186 PANQGSSVGVSKVANEAQYQQAVALAFEFDH--KVVVEQGIKGREIECAVLGNDNPQAST 243

Query: 192 IA--VPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               V  S+FY+Y+ KY   N    V+PA+IP ++  +++ +A  A+Q +GC G++R D 
Sbjct: 244 CGEIVLNSEFYAYDTKYIDDNGAQVVVPAQIPSEVNDKIRAIAIQAYQTLGCAGMARVD- 302

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           +F     +V   EIN  PG T +S++P++   +G  + +L+  ++E
Sbjct: 303 VFLTADNEVVINEINTLPGFTNISMYPKLWQASGLGYTDLISRLIE 348


>gi|224582216|ref|YP_002636014.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|224466743|gb|ACN44573.1| D-alanylalanine synthetase [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
          Length = 370

 Score =  134 bits (337), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 90/346 (26%), Positives = 169/346 (48%), Gaps = 55/346 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------A 47
           + ++ GG S+E EVSL S K    A++   F V  + +D++    +             A
Sbjct: 12  VGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGIDKAGQWHVNDAENYLQNADDPA 71

Query: 48  H--LKP----------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
           H  L+P                            D+ F ++HG  GEDG +Q +L +  +
Sbjct: 72  HIALRPSAISLAQVPGKHQHQLINAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 131

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVIK 131
           P+  S +L+SA  MDK  +K+++   G+ + P I + R    +      +  +  P  +K
Sbjct: 132 PFVGSDVLSSAACMDKDVAKRLLRDAGLNIAPFITLTRTNRHAFSFAEVESRLGLPLFVK 191

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  +  +      +  +  ++H  ++++EQ + G E+ C V+G+ +   + 
Sbjct: 192 PANQGSSVGVSKVANEAQYQQAVALAFEFDH--KVVVEQGIKGREIECAVLGNDNPQAST 249

Query: 192 IA--VPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               V  S+FY+Y+ KY   N    V+PA+IP ++  +++ +A  A+Q +GC G++R D 
Sbjct: 250 CGEIVLNSEFYAYDTKYIDDNGAQVVVPAQIPSEVNDKIRAIAIQAYQTLGCAGMARVD- 308

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           +F     +V   EIN  PG T +S++P++   +G  + +L+  ++E
Sbjct: 309 VFLTADNEVVINEINTLPGFTNISMYPKLWQASGLGYTDLISRLIE 354


>gi|251790921|ref|YP_003005642.1| D-alanine/D-alanine ligase [Dickeya zeae Ech1591]
 gi|247539542|gb|ACT08163.1| D-alanine/D-alanine ligase [Dickeya zeae Ech1591]
          Length = 366

 Score =  134 bits (337), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 92/346 (26%), Positives = 162/346 (46%), Gaps = 55/346 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------------------- 40
           + V+ GG SSE EVSL S K    A++   F V  + +D+                    
Sbjct: 6   VGVVFGGKSSEHEVSLQSAKNIVDAIDKTRFDVVLLGIDKQGEWHVNDASNYLLNADNPA 65

Query: 41  ---------SVGLVLAHL--------------KPDLAFNVLHGNFGEDGLVQAILELLEI 77
                    +V L+                  + D+ F ++HG  GEDG +Q +L +  I
Sbjct: 66  LIALNRSSQNVALIPGQTHHQLIDTASASALSQIDVIFPIVHGTLGEDGSLQGLLRMANI 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM------DSQHLISPPYVIK 131
           P+  S +L SA+SMDK  +K+++   G+ V P + + R         D    +  P  +K
Sbjct: 126 PFVGSSVLGSAVSMDKDVTKRLLRDAGLQVAPFVTLTRANRARHAYGDLTAQLGLPLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD--ASLDV 189
           P   GSS+G+  ++        +  +  ++H  ++L+E  + G E+ C V+G+      V
Sbjct: 186 PANQGSSVGVSKVRNQAEFDHAVELAFRYDH--KVLVESAIVGREIECAVLGNDYPKASV 243

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               V   +FYSY+ KY + +   V +PA +  D+++ ++ +A  A QA+ CRG++R D 
Sbjct: 244 CGEIVLHDEFYSYDTKYINEDGAAVAIPAVMNDDVHQHIRDIALRAFQALDCRGMARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
              P   +V   E+N  PG T +S++P++   +G  +  L+  ++E
Sbjct: 304 FLTP-DNQVVVNEVNTLPGFTNISMYPKLWEASGIGYTALITQLIE 348


>gi|254446850|ref|ZP_05060325.1| D-ala D-ala ligase N-terminal domain protein, putative
           [Verrucomicrobiae bacterium DG1235]
 gi|198256275|gb|EDY80584.1| D-ala D-ala ligase N-terminal domain protein, putative
           [Verrucomicrobiae bacterium DG1235]
          Length = 310

 Score =  134 bits (337), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 103/304 (33%), Positives = 164/304 (53%), Gaps = 18/304 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--DLAFNVL 58
           +AVL GG S EREVSL SGKA A+AL  + F+V   DV ++   +   L P   + F+ L
Sbjct: 6   IAVLYGGTSEEREVSLGSGKAAAAALGKS-FEVDLFDV-QAYSRLPDGLDPRRHVVFSTL 63

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
           HG+FGEDG  Q +++   + Y     ++S L+ DK+ +K+ +S+ GVPV   ++     +
Sbjct: 64  HGSFGEDGTAQRMMDEAGVIYAGCDAVSSQLTFDKVATKREMSAAGVPVTREVVFADGAI 123

Query: 119 DSQHLI----SPPYVIKPLKGGSSLGIIVIKKDQSIP--LDLLQSSSWNHGDQLLIEQYV 172
                I        V+KP+  GSS+G++  + +  I   L   +   W      L+E  +
Sbjct: 124 PGVEEIIGRLGSSVVLKPVAQGSSVGLMFAESEAKIVGCLKNCEEGRW------LVEPRI 177

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G E T G++   ++ V EI  PKS  + Y  KY+   + ++ PA+   ++ + +++LA 
Sbjct: 178 QGQEATVGILDGEAMGVVEIR-PKSGHFDYSSKYTKGLTEYIAPAEFDEELTERIRKLAT 236

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
            A +A GCR  +R D + D      ++LEIN  PG+   S+ P  AA +GY+F ELL  +
Sbjct: 237 KAFEACGCRDYARIDCMVD-TGGNPYFLEINTLPGLKETSLLPMSAALSGYNFDELLQKL 295

Query: 293 VEDA 296
           VE A
Sbjct: 296 VEPA 299


>gi|104773391|ref|YP_618371.1| D-alanyl-alanine synthetase A [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
 gi|123077164|sp|Q1G7Q5|DDL_LACDA RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|103422472|emb|CAI97025.1| D-alanine--D-alanine ligase [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
          Length = 362

 Score =  134 bits (337), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 93/340 (27%), Positives = 170/340 (50%), Gaps = 49/340 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASA----------------------------LEDAGFK 32
           + ++ GG SSE EVS++S      A                            LE+ G+ 
Sbjct: 7   VGLIFGGNSSEYEVSITSAGNIYKAIDKDKFDVHPIWITNSGYVASEADSYKVLEEPGYM 66

Query: 33  VSQIDVDRSV-GLVLAHLKP--DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
           V + D   ++  L+    +P  D+ F ++HGN GEDG++Q +  L++ P+    +LA+A+
Sbjct: 67  VEKNDKTANLSNLIELASRPELDVLFPIVHGNLGEDGVLQGLFRLIDKPFVGVDVLAAAV 126

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMD------------SQHLISPPYVIKPLKGGS 137
           +MDK  +K +    GVPV   + + R+  +            S  L +    +KP   GS
Sbjct: 127 TMDKEFTKILAQRAGVPVAKWVSIKRYEYEDAKNQKLSYDWVSGQLGTSNLFVKPSNQGS 186

Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS---LDVTEIAV 194
           S+GI  +  D +    L +  ++ + D++L+E+ + G E+   V+G+       V +I  
Sbjct: 187 SVGITHVTDDSNYAEALAE--AFKYDDKVLVEEGIVGTEVETAVLGNDHPVVSGVGQIIN 244

Query: 195 PKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
             + +YSYE KYS+ ++T + +PA+IP +  ++VQ  A   +Q   C G++R D +    
Sbjct: 245 ADNTWYSYENKYSTESTTTLQIPAQIPAETAEKVQENALKIYQITECSGMARVDSMLRES 304

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
             +V + E+N  PG T +S++P++   AG S+ +L+  ++
Sbjct: 305 DGEVIFNELNALPGFTNISMYPKLFEEAGISYPDLITRLI 344


>gi|224531899|ref|ZP_03672531.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase) [Borrelia
           valaisiana VS116]
 gi|224511364|gb|EEF81770.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase) [Borrelia
           valaisiana VS116]
          Length = 361

 Score =  134 bits (336), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 89/344 (25%), Positives = 170/344 (49%), Gaps = 50/344 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAG-FKVSQIDVDRSVGL--------------- 44
           + ++ GG+S E E+S  S       L D   + +  + +D+  G+               
Sbjct: 5   LMLIFGGVSFEHEISCKSAYGIYLTLLDLDKYNIYPVYIDKCTGIWYLLESVSDPPKPIN 64

Query: 45  --------------VLAH---LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87
                         + A+   L+ D+ F V+HG  GEDG +Q +L++++IP   +GI+ S
Sbjct: 65  IDVLPVVSLLPGFGIFANNKNLEIDVVFPVVHGRTGEDGAIQGVLKVMDIPCVGAGIMGS 124

Query: 88  ALSMDKMRSKQVVSSCGVPVCPSILVNRF---------TMDSQHLISPPYVIKPLKGGSS 138
           A+S +K   K ++ S  +P+ P I   ++           D + ++  P +IKP   GSS
Sbjct: 125 AISSNKYFCKLLLKSFNIPLVPFIGFRQYDYFLDKEEIKRDVKEVLGYPVIIKPAVLGSS 184

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV---TEIAVP 195
           +GI V   +  I   + +S  ++    ++IE++++  E+ C V+G+  + +    E+ V 
Sbjct: 185 IGINVAYSENQIESFIKESLKYDL--TIVIEKFIEAREIECSVIGNEKIKIFSPGEVVVQ 242

Query: 196 KSDFYSYELKYSSLNSTHV---LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
              FY Y+ KYS +    +   +PA +  +    ++  AFL ++ +G RG++R DF  + 
Sbjct: 243 DFIFYDYDAKYSVIPGNSIIFNIPAYLETNQLLTIKEYAFLVYKNLGLRGMARVDFFVEK 302

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            S  ++  EIN  PG T +S+F +M ++ G  F++L+  +++ A
Sbjct: 303 KSGTIYLNEINTIPGFTDISMFAKMCSHDGLQFKDLVDNLIDYA 346


>gi|302385662|ref|YP_003821484.1| D-alanine/D-alanine ligase [Clostridium saccharolyticum WM1]
 gi|302196290|gb|ADL03861.1| D-alanine/D-alanine ligase [Clostridium saccharolyticum WM1]
          Length = 351

 Score =  134 bits (336), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 102/331 (30%), Positives = 159/331 (48%), Gaps = 49/331 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID----------------------- 37
           + VL GG S EREVSLSSG    +AL   G +V  +D                       
Sbjct: 3   IVVLAGGFSPEREVSLSSGAMITNALIRTGHEVYLLDSYLGAADGEEVRFKSLHDGTGFF 62

Query: 38  --VDRSV-------------GLVLAHL-----KPDLAFNVLHGNFGEDGLVQAILELLEI 77
             + R V             G +   +       D+ F  LHG  GE+G +QA+L+   I
Sbjct: 63  WEIGREVPELDRLSKERNGKGYIGNRVIEICGLADIVFVALHGGAGENGQIQAVLDAYGI 122

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGS 137
            YT +G      +MDK  +K ++ + G+P     L +R   +S      P V+KP   GS
Sbjct: 123 SYTGTGYEGCLKAMDKPMAKLLMRNSGIPTPDWRLYSR--GESLEPFPYPCVVKPCGCGS 180

Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKS 197
           S+GI +++ +    + L   S++++ D++L E  + G E + G++G+ +L   EI +PK 
Sbjct: 181 SVGITMVEGEDQWEMAL--DSAFSYEDRVLAEVKITGREFSVGILGERALPAIEI-IPKK 237

Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
            FY YE KY +  +  + PA +  +  + +  +A   H+ +G    SR DFL +     +
Sbjct: 238 GFYDYENKYQAGLTEEICPASLTEEQEEFMGCMALKVHRVLGLGYYSRVDFLMEE-DGSL 296

Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           F LE N  PGMTP S+ P+ A  AG S++EL
Sbjct: 297 FCLEANTLPGMTPFSLLPQKAQAAGISYQEL 327


>gi|78779786|ref|YP_397898.1| D-alanine--D-alanine ligase [Prochlorococcus marinus str. MIT 9312]
 gi|123553873|sp|Q319I3|DDL_PROM9 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|78713285|gb|ABB50462.1| D-alanine--D-alanine ligase [Prochlorococcus marinus str. MIT 9312]
          Length = 355

 Score =  134 bits (336), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 96/345 (27%), Positives = 170/345 (49%), Gaps = 54/345 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALED---------AGFKVSQ----IDVDRSVGLVLA 47
           + ++ GG S+E +VS+SS K   +A              F +++    ID D SV +++ 
Sbjct: 9   IGLIFGGYSNEHDVSISSAKTVFNAFNSEINKQRFNVKAFYINKYGDWIDNDISVKILIG 68

Query: 48  HLKP-------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
            ++                          D+ F +LHG  GEDG +  +L+    P    
Sbjct: 69  EIEHKKTKKQELFNQKKINFLDGIEFQNIDIWFPLLHGFNGEDGSIHGLLKFTNKPLVGC 128

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILV-----------NRFTMDSQHLISPPYVIK 131
           GIL SAL MDK+  K + S+  +P    +++           N+  ++    ++ P  +K
Sbjct: 129 GILGSALGMDKILMKTIFSNLKIPQVNYLVIQNEDLNNLEVKNKLIIEIIKKLNFPVFVK 188

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSSLGI  +  ++S  L  L+ + W    ++L+E+ ++  E+ CG++G++ L  +E
Sbjct: 189 PSNSGSSLGISKVI-NKSALLKALEKA-WEIDARILVEEGLETREIECGIIGNSELLTSE 246

Query: 192 IAVPK--SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
           I   +  SD+Y Y+ KY+S N+   +PAKI   I K+++ +A  + + +   G +R DF 
Sbjct: 247 IGEVEYGSDWYDYDSKYNS-NNKITIPAKIDSKITKQIKEIAIQSCRTLNIFGFARVDFF 305

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            +  S K+F  EIN  PG T  S+FP +   +G +  +L+  +V+
Sbjct: 306 LEKSSNKIFLNEINTIPGFTKKSMFPMLWEASGLNIEQLVAKLVD 350


>gi|281490888|ref|YP_003352868.1| D-alanine--D-alanine ligase [Lactococcus lactis subsp. lactis
           KF147]
 gi|281374646|gb|ADA64166.1| D-alanine--D-alanine ligase [Lactococcus lactis subsp. lactis
           KF147]
          Length = 349

 Score =  134 bits (336), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 104/336 (30%), Positives = 161/336 (47%), Gaps = 48/336 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           + +L GG S+EREVS+ S ++   A+  + F V    + +    +               
Sbjct: 6   LILLYGGRSAEREVSVLSAESVMRAVNYSRFVVKTYFITKGGEFIKTQEFTDKPAEEEKL 65

Query: 49  LKPDLA------------------FNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
           L  DLA                  F VLHG  GEDG +Q  LE+L + Y    IL+++ +
Sbjct: 66  LTNDLAESYPKISPAAIYEKDAVVFPVLHGPMGEDGSIQGFLEILRLAYVGPNILSASST 125

Query: 91  MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP--------PYVIKPLKGGSSLGII 142
           MDK+ +K V  + GVP  P   V  F  ++Q  I+         P  +KP   GSS+GI 
Sbjct: 126 MDKLLAKHVFEAVGVPQVP--YVAAFADENQGEIAQEVVEKLEFPVFVKPANMGSSVGI- 182

Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI----AVPKSD 198
             K D    L    S ++ + ++++IEQ VD  E+ C V+G+ S DV+       V   +
Sbjct: 183 -SKVDDLADLQPALSEAYKYDNRVVIEQGVDAREIECAVLGNNS-DVSATLPGEVVKDVE 240

Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
           FY Y  KY        +PAK+P D+ +++Q  A  A++A+   G+SR DF F      V+
Sbjct: 241 FYDYNSKYIDNKIQMDIPAKVPADLAQKMQEYAIKAYKAVNGTGLSRCDF-FVTKDGNVY 299

Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             EIN  PG T  S++P +    G S+ +L+  +V+
Sbjct: 300 LNEINAIPGFTQWSMYPLLWENMGLSYSDLIEKLVD 335


>gi|325124996|gb|ADY84326.1| D-alanine-d-alanine ligase [Lactobacillus delbrueckii subsp.
           bulgaricus 2038]
          Length = 362

 Score =  134 bits (336), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 93/340 (27%), Positives = 170/340 (50%), Gaps = 49/340 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASA----------------------------LEDAGFK 32
           + ++ GG SSE EVS++S      A                            LE+ G+ 
Sbjct: 7   VGLIFGGNSSEYEVSITSAGNIYKAIDKDKFDVHPIWITNSGYVASEADSYKVLEEPGYM 66

Query: 33  VSQIDVDRSV-GLVLAHLKP--DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
           V + D   ++  L+    +P  D+ F ++HGN GEDG++Q +  L++ P+    +LA+A+
Sbjct: 67  VEKNDKTANLSNLIELASRPELDVLFPIVHGNLGEDGVLQGLFRLIDKPFVGVDVLAAAV 126

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMD------------SQHLISPPYVIKPLKGGS 137
           +MDK  +K +    GVPV   + + R+  +            S  L +    +KP   GS
Sbjct: 127 TMDKEFTKILAQRAGVPVAKWVSIKRYEYEDAKNQKLSYDWVSGQLGTSNLFVKPSNQGS 186

Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS---LDVTEIAV 194
           S+GI  +  D +    L +  ++ + D++L+E+ + G E+   V+G+       V +I  
Sbjct: 187 SVGITHVTDDSNYAEALAE--AFKYDDKVLVEEGIVGTEVETAVLGNDHPVVSGVGQIIN 244

Query: 195 PKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
             + +YSYE KYS+ ++T + +PA+IP +  ++VQ  A   +Q   C G++R D +    
Sbjct: 245 ADNTWYSYENKYSTESTTTLQIPAQIPAETAEKVQENALKIYQITECSGMARVDSMLRES 304

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
             +V + E+N  PG T +S++P++   AG S+ +L+  ++
Sbjct: 305 DGEVIFNELNALPGFTNISMYPKLFEEAGISYPDLITRLI 344


>gi|50954660|ref|YP_061948.1| D-alanine:D-alanine ligase [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|50951142|gb|AAT88843.1| D-alanine:D-alanine ligase [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 297

 Score =  134 bits (336), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 91/254 (35%), Positives = 130/254 (51%), Gaps = 21/254 (8%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           DL F +LHG +GEDG +Q +LEL+ +PY  SG+LASAL MDK  +K V+   G+PV P  
Sbjct: 38  DLVFPILHGPWGEDGTLQGMLELVGLPYVGSGVLASALGMDKHFTKTVLQQAGIPVAPWT 97

Query: 112 LVNRFTMDS--------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
            V  +   +           +  P  +KP + GSS+G+  +++     LD     ++   
Sbjct: 98  TVTAYEWRTGADAVRAAARELGLPVFVKPARAGSSVGVGKVREWPE--LDAAMDIAFAED 155

Query: 164 DQLLIEQYVDGIELTCGVMG-----DASLDVT-EIAVPKSDFYSYELKYSSLNSTH-VLP 216
           D++LIE  V G E+   V+G      A   V  EI V   DFY Y  KY        V P
Sbjct: 156 DRVLIESGVVGREVEIAVLGGRPGESARASVAGEIVVSGRDFYDYAAKYLDAPGIDLVCP 215

Query: 217 AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL-EINVQPGMTPVSIFP 275
           AK+      +++ L   A  AIG  G++R DF    L+ + F + EIN  PG TP+S+FP
Sbjct: 216 AKLTDAELVQMRALGVRAFDAIGGEGLARVDFF---LTAEGFVVNEINTMPGFTPISMFP 272

Query: 276 EMAAYAGYSFRELL 289
                 G S+ EL+
Sbjct: 273 RCWQETGLSYPELI 286


>gi|288936910|ref|YP_003440969.1| D-alanine/D-alanine ligase [Klebsiella variicola At-22]
 gi|288891619|gb|ADC59937.1| D-alanine/D-alanine ligase [Klebsiella variicola At-22]
          Length = 365

 Score =  134 bits (336), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 93/346 (26%), Positives = 166/346 (47%), Gaps = 55/346 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD--------------------- 39
           + ++ GG S+E EVSL S K    A++ + F V  + +D                     
Sbjct: 6   VGIVFGGKSAEHEVSLQSAKNIVEAIDKSRFDVVLLGIDKQGLWHINDAGNYLLNAQDPA 65

Query: 40  ----RSVGLVLAHL--------------KP----DLAFNVLHGNFGEDGLVQAILELLEI 77
               R   + LA +              +P    D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  RIALRPSTVTLAQIPGREAQQLINADSGQPLAAIDVIFPIVHGTLGEDGSLQGMLRMANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLISPPYVIK 131
           P+  S +L SA  MDK  +K+++   G+ V P I + R         D +  +  P  +K
Sbjct: 126 PFVGSDVLGSAACMDKDVTKRLLRDAGLAVAPFITLTRANRAQFSFADVEAKLGLPLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+GI  +K ++     +  +  ++H  ++++EQ + G E+ C V+G+     + 
Sbjct: 186 PANQGSSVGISKVKNEEQYHQAVALAFEFDH--KVVVEQGIKGREIECAVLGNDHPQAST 243

Query: 192 IA--VPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               V  S+FY+Y+ KY     +  V+PA I  +I  +++ +A  A+Q +GC G++R D 
Sbjct: 244 CGEIVLNSEFYAYDTKYIDDQGAQVVVPAAIAPEINDKIRAIAVQAYQTLGCSGMARVD- 302

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           +F     +V   EIN  PG T +S++P++   +G  +  L+  ++E
Sbjct: 303 VFLTADNEVVINEINTLPGFTNISMYPKLWQASGLDYTSLITRLIE 348


>gi|15672323|ref|NP_266497.1| D-alanyl-alanine synthetase A [Lactococcus lactis subsp. lactis
           Il1403]
 gi|13878460|sp|Q9CIL5|DDL_LACLA RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|12723209|gb|AAK04439.1|AE006271_2 D-alanine-D-alanine ligase [Lactococcus lactis subsp. lactis
           Il1403]
 gi|326405920|gb|ADZ62991.1| D-alanine-D-alanine ligase [Lactococcus lactis subsp. lactis CV56]
          Length = 349

 Score =  134 bits (336), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 104/336 (30%), Positives = 161/336 (47%), Gaps = 48/336 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           + +L GG S+EREVS+ S ++   A+  + F V    + +    +               
Sbjct: 6   LILLYGGRSAEREVSVLSAESVMRAVNYSRFVVKTYFITKGGEFIKTQEFTDKPAEEEKL 65

Query: 49  LKPDLA------------------FNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
           L  DLA                  F VLHG  GEDG +Q  LE+L + Y    IL+++ +
Sbjct: 66  LTNDLAESYPKISPAAIYEKAAVVFPVLHGPMGEDGSIQGFLEILRLAYVGPNILSASST 125

Query: 91  MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP--------PYVIKPLKGGSSLGII 142
           MDK+ +K V  + GVP  P   V  F  ++Q  I+         P  +KP   GSS+GI 
Sbjct: 126 MDKLLAKHVFEAVGVPQVP--YVAAFADENQGEIAQEVVEKLEFPVFVKPANMGSSVGI- 182

Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI----AVPKSD 198
             K D    L    S ++ + ++++IEQ VD  E+ C V+G+ S DV+       V   +
Sbjct: 183 -SKVDDLADLQPALSEAYKYDNRVVIEQGVDAREIECAVLGNNS-DVSATLPGEVVKDVE 240

Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
           FY Y  KY        +PAK+P D+ +++Q  A  A++A+   G+SR DF F      V+
Sbjct: 241 FYDYNSKYIDNKIQMDIPAKVPADLAQKMQEYAIKAYKAVNGTGLSRCDF-FVTKDGNVY 299

Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             EIN  PG T  S++P +    G S+ +L+  +V+
Sbjct: 300 LNEINAIPGFTQWSMYPLLWENMGLSYSDLIEKLVD 335


>gi|325000509|ref|ZP_08121621.1| D-alanyl-alanine synthetase A [Pseudonocardia sp. P1]
          Length = 356

 Score =  134 bits (336), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 91/276 (32%), Positives = 143/276 (51%), Gaps = 26/276 (9%)

Query: 28  DAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87
           DAG  +SQ+DV                F +LHG FGEDG +Q +LE+  +PY  +G+LAS
Sbjct: 92  DAGEALSQVDV---------------VFPILHGAFGEDGTIQGLLEMAGLPYVGAGVLAS 136

Query: 88  ALSMDKMRSKQVVSSCGVPVCPSILVNRFT---MDSQHLISPPYVIKPLKGGSSLGIIVI 144
           A+ MDK  +K+++ + G+ V   I++   T      +  +  P  +KP + GSS+G+  +
Sbjct: 137 AVGMDKEFAKKLLRAEGLNVADGIVLRPGTDIGFADRDRLGLPLFVKPARAGSSMGVTRV 196

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG--DASLDVTEIAVPK--SDFY 200
                  LD   + +  H  ++L+E  V G E+ C V+   D S+  +  A  +   +FY
Sbjct: 197 TDPAG--LDAAIAEAREHDPKVLVESAVPGREVECAVLEFPDGSVRASLPAELRYNGEFY 254

Query: 201 SYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260
            +E KY  ++   + PAK+  +I   V+  A  A +A+  +G++R DF F      +   
Sbjct: 255 DFESKYLDVSELEI-PAKLDDEITDSVRWKAVTAFRALDVQGLARVDF-FVTDDGHITVN 312

Query: 261 EINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           E+N  PG TP S FP+M A  G  + ELL  MVE A
Sbjct: 313 EVNTMPGFTPSSAFPKMWAVTGLDYGELLTTMVETA 348


>gi|295396022|ref|ZP_06806206.1| D-alanine-D-alanine ligase [Brevibacterium mcbrellneri ATCC 49030]
 gi|294971110|gb|EFG47001.1| D-alanine-D-alanine ligase [Brevibacterium mcbrellneri ATCC 49030]
          Length = 369

 Score =  134 bits (336), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 88/279 (31%), Positives = 144/279 (51%), Gaps = 24/279 (8%)

Query: 38  VDRSVGLVLAHL-KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRS 96
           ++R      A L  PD+ F +LHG +GEDG +Q +L L+++P+   G+ +S+  MDK  +
Sbjct: 87  IERDAQGAFADLGSPDIVFPLLHGQYGEDGTMQGLLSLMDVPFVGPGVFSSSAGMDKHFT 146

Query: 97  KQVVSSCGVPVCPSILVN--------RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQ 148
           K V+ + G+P      V+        + T+DS   +  P  +KP + GSS+GI  +    
Sbjct: 147 KMVLRAAGIPTADWKTVSLTQYQADPQATIDSLQELGLPAFVKPSRAGSSVGISKVSDTS 206

Query: 149 SIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG---DASLDVT---EIAVP-KSDFYS 201
                L    ++ H  ++++E +VDG E+ C V+G   D  L  +   EI V    +FY 
Sbjct: 207 GFKAAL--DDAFAHDTKVIVEPFVDGREIECAVLGSVNDRELKASSPGEIIVSGDHEFYD 264

Query: 202 YELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260
           ++ KY  L++T +  PA +  D+ + V+ +A    +A  C G++R D    P + +V   
Sbjct: 265 FDAKYLDLDATTLTCPADVEPDVAERVRDIACQTFRAFDCTGLTRVDTFVRP-NGEVLVN 323

Query: 261 EINVQPGMTPVSIFPEMAAYAGYSFR----ELLLWMVED 295
           EIN  PG TP S +P M   +G  ++    ELL   VED
Sbjct: 324 EINTSPGFTPTSGYPFMWEQSGLPYKDLITELLKIAVED 362


>gi|116513372|ref|YP_812278.1| D-alanyl-alanine synthetase A [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
 gi|122275858|sp|Q04CI2|DDL_LACDB RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|116092687|gb|ABJ57840.1| D-alanine--D-alanine ligase [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
          Length = 362

 Score =  134 bits (336), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 93/340 (27%), Positives = 170/340 (50%), Gaps = 49/340 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASA----------------------------LEDAGFK 32
           + ++ GG SSE EVS++S      A                            LE+ G+ 
Sbjct: 7   VGLIFGGNSSEYEVSITSAGNIYKAIDKDKFDVHPIWITNSGYVASEADSYKVLEEPGYM 66

Query: 33  VSQIDVDRSV-GLVLAHLKP--DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
           V + D   ++  L+    +P  D+ F ++HGN GEDG++Q +  L++ P+    +LA+A+
Sbjct: 67  VEKNDKTANLSNLIELASRPELDVLFPIVHGNLGEDGVLQGLFRLIDKPFVGVDVLAAAV 126

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMD------------SQHLISPPYVIKPLKGGS 137
           +MDK  +K +    GVPV   + + R+  +            S  L +    +KP   GS
Sbjct: 127 TMDKEFTKILAQRAGVPVAKWVSIKRYEYEDAKNQKLSYDWVSGQLGTSNLFVKPSNQGS 186

Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS---LDVTEIAV 194
           S+GI  +  D +    L +  ++ + D++L+E+ + G E+   V+G+       V +I  
Sbjct: 187 SVGITHVTDDSNYAEALAE--AFKYDDKVLVEEGIVGTEVETAVLGNDHPVVSGVGQIIN 244

Query: 195 PKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
             + +YSYE KYS+ ++T + +PA+IP +  ++VQ  A   +Q   C G++R D +    
Sbjct: 245 ADNTWYSYENKYSTESTTTLQIPAQIPAETAEKVQENALKIYQITECSGMARVDSMLRES 304

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
             +V + E+N  PG T +S++P++   AG S+ +L+  ++
Sbjct: 305 DGEVIFNELNALPGFTNISMYPKLFEEAGISYPDLITRLI 344


>gi|91214527|ref|ZP_01251500.1| D-alanylalanine synthetase [Psychroflexus torquis ATCC 700755]
 gi|91186954|gb|EAS73324.1| D-alanylalanine synthetase [Psychroflexus torquis ATCC 700755]
          Length = 329

 Score =  134 bits (336), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 101/325 (31%), Positives = 162/325 (49%), Gaps = 35/325 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASAL-EDAGFKV-----------------SQIDVDRSV 42
           +AV MGG S E E+SL SG+     L ++  ++V                  +I +D+S 
Sbjct: 5   IAVAMGGYSKEAEISLKSGEVVYKQLTKNENYRVYRAQILKNGWTIKTDIGEEIPIDKSN 64

Query: 43  GLVLAHLKP---DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
             V+ + +P   D  FN +HG  GEDGL Q  L+ LEIP T      +AL+ +K     V
Sbjct: 65  FSVVINGEPIHFDCVFNTIHGTPGEDGLFQGYLQTLEIPQTACDYYQAALTFNKRDCISV 124

Query: 100 VSSCGVPVCPSILVNRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
           + + G+    +I +N+    +       I  P  +K  + GSS GI  +K    I   L 
Sbjct: 125 LRANGIKTAKNIYINKGDDINPSAIVEYIGLPCFVKANRAGSSYGISKVKHKDDILTAL- 183

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNS 211
              S+   D+++IE ++DG E++ GV+       +L VTEI + +++F+ +E KY    S
Sbjct: 184 -EHSFKEDDEVIIESFLDGTEVSVGVINIKGNIIALPVTEI-ISENEFFDFEAKYLG-KS 240

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271
             + PA I     K+V+  A    + +  +G++RS+F+F   + +  +LE N  PG+T  
Sbjct: 241 KEITPATISDSQTKDVKDQAVRIFKLLKLKGLTRSEFIFH--NNEPHFLECNACPGLTEA 298

Query: 272 SIFPEMAAYAGYSFRELLLWMVEDA 296
           SI P+ A  AG S ++L    VE A
Sbjct: 299 SILPQQAKAAGISLQDLFTNAVEVA 323


>gi|317474425|ref|ZP_07933699.1| D-alanine-D-alanine ligase [Bacteroides eggerthii 1_2_48FAA]
 gi|316909106|gb|EFV30786.1| D-alanine-D-alanine ligase [Bacteroides eggerthii 1_2_48FAA]
          Length = 324

 Score =  134 bits (336), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 92/323 (28%), Positives = 158/323 (48%), Gaps = 33/323 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKV-----------------SQIDVDR--- 40
           +A+  GG +SE EVSL S +   S ++   + +                 ++  VDR   
Sbjct: 5   IAIACGGDTSEFEVSLRSAQGIYSFIDKEKYTLYIVEMHGLDWHVQLPDGTKAPVDRNDF 64

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           S  L    +  D  +  +HG  GEDG +Q  L++L IPY+  G+LA+AL+ DK    Q +
Sbjct: 65  SFRLGGEKVVFDFVYITIHGTPGEDGRLQGYLDMLHIPYSCCGVLAAALTYDKFACNQYL 124

Query: 101 SSCGVPVCPSILVNRFTMDSQH----LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
            + GV +  S+L+ +    S       I  P  IKP  GGSS G+  +K  + I   +  
Sbjct: 125 KAFGVRIADSLLLRQGQSVSDEDVIGKIGLPCFIKPSLGGSSFGVTKVKTREEIQPAI-- 182

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDAS----LDVTEIAVPKSDFYSYELKYSSLNST 212
             ++    ++L+E ++ G+E+TCG            +TE+ V  ++++ Y+ KY+   S 
Sbjct: 183 EKAFKEAREVLVEAFMQGMEITCGCYKTKEKSVVFPITEV-VSHNEYFDYKAKYNG-ESD 240

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
            + PA+IP ++   VQ+L    +  +G  GI R D++      K+  LE+N  PGMT  S
Sbjct: 241 EITPARIPDELRDRVQKLTSAIYDILGAAGIIRVDYIITE-GEKINLLEVNTTPGMTATS 299

Query: 273 IFPEMAAYAGYSFRELLLWMVED 295
             P+    A    ++++  ++E+
Sbjct: 300 FIPQQVRAANLDIKDVMTDIIEN 322


>gi|160881909|ref|YP_001560877.1| D-alanine--D-alanine ligase [Clostridium phytofermentans ISDg]
 gi|160430575|gb|ABX44138.1| D-alanine--D-alanine ligase [Clostridium phytofermentans ISDg]
          Length = 353

 Score =  134 bits (336), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 80/261 (30%), Positives = 141/261 (54%), Gaps = 12/261 (4%)

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV 105
           + + K D+ F VLHG FGEDG VQ +LEL  +PY   G+LAS++SMDK+ +K +V S G+
Sbjct: 89  VEYQKVDVVFPVLHGLFGEDGTVQGLLELAGVPYVGCGVLASSVSMDKLYTKIIVDSLGI 148

Query: 106 ------PVCPSIL--VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
                 PV    L  +N+     ++ IS P  IKP   GSS GI        + + L ++
Sbjct: 149 RQAAYEPVYAKELEEMNKVVERIENRISYPVFIKPSNAGSSKGITKAHNRDDLIVGLKEA 208

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA--VPKSDFYSYELKYSSLNSTHVL 215
           +   H  ++L+E+ + G E+ C V+G      + +   +  ++FY Y+ KY++ +S  ++
Sbjct: 209 AE--HDRKILVEETIVGREIECAVLGGMEAKASGVGEILAAAEFYDYDAKYNNADSKTII 266

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275
             ++P    +E+   A    +A+    +SR DF  +  + ++ + EIN  PG T +S++P
Sbjct: 267 SPELPEGKAQEISDAAVKIFRAVDGYSLSRVDFFLEKDTNEIVFNEINTLPGFTAISMYP 326

Query: 276 EMAAYAGYSFRELLLWMVEDA 296
            +    G +  +L+  +++ A
Sbjct: 327 MLWEAKGIAKPQLVEKLIQTA 347


>gi|257877594|ref|ZP_05657247.1| ligase [Enterococcus casseliflavus EC20]
 gi|257811760|gb|EEV40580.1| ligase [Enterococcus casseliflavus EC20]
          Length = 350

 Score =  134 bits (336), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 82/250 (32%), Positives = 138/250 (55%), Gaps = 13/250 (5%)

Query: 49  LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
           L PD+ F ++HG +GEDG +Q + EL+++PY   G+ +SAL M+K    Q  ++ GV   
Sbjct: 93  LVPDVLFPIMHGKYGEDGSIQGLFELMKLPYVGCGVASSALCMNKWLLHQAAAAIGVQSA 152

Query: 109 PSILVNRFTMDSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN 161
           P+IL+     + Q  I         P   KP + GSS GI  +   + I   L    ++ 
Sbjct: 153 PTILLTN-QANQQEQIEAFIQTHGFPVFFKPNEAGSSKGITKVTCVEEIASAL--KEAFT 209

Query: 162 HGDQLLIEQYVDGIELTCGVMGDASLDVTEI-AVPKSD-FYSYELKYSSLNSTHVLPAKI 219
           +   +L+++ + G+E+ CG++G+ SL V    A+   D F+ +E KY  +++   +PA +
Sbjct: 210 YCSAVLLQKNIVGVEIGCGILGNDSLTVGACDAISLEDGFFDFEEKYQLISAKITVPAPL 269

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279
           P  I  +V+  A L ++++G +G++R DF F     +++  EIN  PG T  S +P M A
Sbjct: 270 PETIETKVKEQAQLLYRSLGLKGLARIDF-FVTDQGELYLNEINTMPGFTSHSRYPAMMA 328

Query: 280 YAGYSFRELL 289
             G S++ELL
Sbjct: 329 AVGLSYQELL 338


>gi|161779873|gb|ABX79428.1| VanC2/3 [Enterococcus casseliflavus]
          Length = 350

 Score =  134 bits (336), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 80/249 (32%), Positives = 137/249 (55%), Gaps = 11/249 (4%)

Query: 49  LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
           L PD+ F ++HG +GEDG +Q + EL+++PY   G+  SAL M+K    Q  ++ GV   
Sbjct: 93  LVPDVLFPIMHGKYGEDGSIQGLFELMKLPYVGCGVAGSALCMNKWLLHQAAAAIGVQSA 152

Query: 109 PSILVNRFTMDSQHLIS------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
           P+IL+       + + +       P   KP + GSS GI  +   + I   L    ++ +
Sbjct: 153 PTILLTNHANQQEQIEAFIQTHGFPVFFKPNEAGSSKGITKVTCVEEIASAL--KEAFTY 210

Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVTEI-AVPKSD-FYSYELKYSSLNSTHVLPAKIP 220
              +L+++ + G+E+ CG++G+ SL V    A+   D F+ +E KY  +++   +PA +P
Sbjct: 211 CSAVLLQKNIAGVEIGCGILGNDSLTVGACDAISLVDGFFDFEEKYQLISAKITVPAPLP 270

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280
             I  +V+  A L ++++G +G++R DF F     +++  EIN  PG T  S +P M A 
Sbjct: 271 ETIETKVKEQAQLLYRSLGLKGLARIDF-FVTDQGELYLNEINTMPGFTSHSRYPAMMAA 329

Query: 281 AGYSFRELL 289
            G S++ELL
Sbjct: 330 VGLSYQELL 338


>gi|624700|gb|AAA60990.1| ligase [Enterococcus casseliflavus]
 gi|161779879|gb|ABX79432.1| VanC2/3 [Enterococcus casseliflavus]
 gi|161779885|gb|ABX79435.1| VanC2/3 [Enterococcus casseliflavus]
          Length = 350

 Score =  134 bits (336), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 82/250 (32%), Positives = 137/250 (54%), Gaps = 13/250 (5%)

Query: 49  LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
           L PD+ F ++HG +GEDG +Q + EL+++PY   G+  SAL M+K    Q  ++ GV   
Sbjct: 93  LVPDVLFPIMHGKYGEDGSIQGLFELMKLPYVGCGVAGSALCMNKWLLHQAAAAIGVQSA 152

Query: 109 PSILVNRFTMDSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN 161
           P+IL+     + Q  I         P   KP + GSS GI  +   + I   L    ++ 
Sbjct: 153 PTILLTN-QANQQEQIEAFIQTHGFPVFFKPNEAGSSKGITKVTCVEEIASAL--KEAFT 209

Query: 162 HGDQLLIEQYVDGIELTCGVMGDASLDVTEI-AVPKSD-FYSYELKYSSLNSTHVLPAKI 219
           +   +L+++ + G+E+ CG++G+ SL V    A+   D F+ +E KY  +++   +PA +
Sbjct: 210 YCSAVLLQKNIAGVEIGCGILGNDSLTVGACDAISLVDGFFDFEEKYQLISAKITVPAPL 269

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279
           P  I  +V+  A L ++++G +G++R DF F     +++  EIN  PG T  S +P M A
Sbjct: 270 PETIETKVKEQAQLLYRSLGLKGLARIDF-FVTERGELYLNEINTMPGFTSHSRYPAMMA 328

Query: 280 YAGYSFRELL 289
             G S++ELL
Sbjct: 329 AVGLSYQELL 338


>gi|119961736|ref|YP_948207.1| D-alanyl-alanine synthetase A [Arthrobacter aurescens TC1]
 gi|190359109|sp|A1R7J5|DDL_ARTAT RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|119948595|gb|ABM07506.1| D-alanine--D-alanine ligase [Arthrobacter aurescens TC1]
          Length = 378

 Score =  134 bits (336), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 85/255 (33%), Positives = 132/255 (51%), Gaps = 20/255 (7%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+ F +LHG +GEDG +Q +LEL +  Y  +G+LASA+ MDK   K V  S G+ V P +
Sbjct: 112 DVVFPLLHGPWGEDGTIQGLLELSDTRYVGAGVLASAVGMDKHFMKVVFESAGLSVGPYV 171

Query: 112 LVN--RFTMDSQHL------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
            V    ++ D++ +      +  P  +KP + GSS+GI   K D    LD     +  H 
Sbjct: 172 AVTDREWSTDAEAVRKRVDKLGFPVFVKPARAGSSMGI--SKVDSMEGLDAAIDEARRHD 229

Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTE--------IAVPKSDFYSYELKYSSLNSTHV- 214
            +L+IE  + G E+ C V+     D           +AV +  FY +  KY    +  + 
Sbjct: 230 LKLVIEAGIVGREIECAVLQGRGTDAPRTSMPGEIAVAVGEHQFYDFAAKYVEDGAAALS 289

Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274
            PA +P +    V+ LA +A  A+G  G+SR DF + P    +   EIN  PG TP S++
Sbjct: 290 CPADMPDEAIARVRELAAVAFDAVGAEGLSRVDFFYTPAGELII-NEINTMPGFTPKSMY 348

Query: 275 PEMAAYAGYSFRELL 289
           P+M A +G ++ +L+
Sbjct: 349 PQMWAASGLAYGDLI 363


>gi|239928719|ref|ZP_04685672.1| D-alanyl-alanine synthetase A [Streptomyces ghanaensis ATCC 14672]
 gi|291437043|ref|ZP_06576433.1| D-alanyl-alanine synthetase A [Streptomyces ghanaensis ATCC 14672]
 gi|291339938|gb|EFE66894.1| D-alanyl-alanine synthetase A [Streptomyces ghanaensis ATCC 14672]
          Length = 385

 Score =  134 bits (336), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 90/263 (34%), Positives = 137/263 (52%), Gaps = 23/263 (8%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+ F VLHG +GEDG +Q +LEL  +PY  SG+LASA+  DK   K+V +S G+ V P +
Sbjct: 120 DVVFPVLHGPYGEDGTLQGLLELSGVPYVGSGVLASAVGQDKEYMKRVFTSFGLKVGPYV 179

Query: 112 LV------------NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
           ++             +  +D       P  +KP + GSS+GI   K D    LD   + +
Sbjct: 180 VIRPREWQRDESAARKKIVDFAGEHGWPLFVKPARAGSSIGI--TKVDDLSGLDGAIAEA 237

Query: 160 WNHGDQLLIEQYVDGIELTCGVM--GDASLDVTEIAVPKSD---FYSYELKYSSLNST-H 213
             H  ++L+E  + G E+ CGV+   D         +P  D   +Y +E KY  ++ST  
Sbjct: 238 QRHDPKILVEAALRGREIECGVLEFEDGPRASVPAEIPPPDAHAYYDFEAKY--IDSTPG 295

Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273
           ++PA +  +   EV+RLA  A +A  C G+ R+DF        V   EIN  PG TP+S+
Sbjct: 296 IVPAPLTEEETAEVRRLAVEAFEAASCEGLVRADFFLTEDGDFVI-NEINTMPGFTPISM 354

Query: 274 FPEMAAYAGYSFRELLLWMVEDA 296
           +P+M    G  + EL+  +V+ A
Sbjct: 355 YPQMWQATGIGYPELVDRLVQAA 377


>gi|161779867|gb|ABX79424.1| VanC2/3 [Enterococcus casseliflavus]
          Length = 350

 Score =  134 bits (336), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 82/250 (32%), Positives = 138/250 (55%), Gaps = 13/250 (5%)

Query: 49  LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
           L PD+ F ++HG +GEDG +Q + EL+++PY   G+ +SAL M+K    Q  ++ GV   
Sbjct: 93  LVPDVLFPIMHGKYGEDGSIQGLFELMKLPYVGCGVASSALCMNKWLLHQAAAAIGVQSA 152

Query: 109 PSILVNRFTMDSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN 161
           P+IL+     + Q  I         P   KP + GSS GI  +   + I   L    ++ 
Sbjct: 153 PTILLTN-QANQQEQIEAFIQTHGFPVFFKPNEAGSSKGITKVTCVEEIASAL--KEAFT 209

Query: 162 HGDQLLIEQYVDGIELTCGVMGDASLDVTEI-AVPKSD-FYSYELKYSSLNSTHVLPAKI 219
           +   +L+++ + G+E+ CG++G+ SL V    A+   D F+ +E KY  +++   +PA +
Sbjct: 210 YCSAVLLQKNIVGVEIGCGILGNDSLTVGACDAISLEDGFFDFEEKYQLISAKITVPAPL 269

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279
           P  I  +V+  A L ++++G +G++R DF F     +++  EIN  PG T  S +P M A
Sbjct: 270 PETIETKVKEQAQLLYRSLGLKGLARIDF-FVTDQGELYLNEINTMPGFTSHSRYPAMMA 328

Query: 280 YAGYSFRELL 289
             G S++ELL
Sbjct: 329 AVGLSYQELL 338


>gi|218549957|ref|YP_002383748.1| D-alanine-D-alanine ligase A [Escherichia fergusonii ATCC 35469]
 gi|218357498|emb|CAQ90137.1| D-alanine-D-alanine ligase A [Escherichia fergusonii ATCC 35469]
          Length = 364

 Score =  134 bits (336), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 91/346 (26%), Positives = 165/346 (47%), Gaps = 55/346 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD--------------------- 39
           + ++ GG S+E EVSL S K    A++   F V  + +D                     
Sbjct: 6   VGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGIDKQGQWHVSDAANYLLNADDPA 65

Query: 40  ----RSVGLVLAHL--------------KP----DLAFNVLHGNFGEDGLVQAILELLEI 77
               R     LA +              +P    D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  RIALRPSATSLAQVPGKHEQQLIDAQTAQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVIK 131
           P+  S +L SA  MDK  +K+++   G+ + P + + R    +      +  +  P  +K
Sbjct: 126 PFVGSDVLGSAACMDKDVTKRLLRDAGLNIAPFVTLTRANRSTITFAEIEAQLGLPLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  +  +      +  +  ++H  ++++E+ + G E+ C V+G+     + 
Sbjct: 186 PANQGSSVGVSKVTNEAEYKKAVDLAFEYDH--KVVVEKGIKGREIECAVLGNDHPQAST 243

Query: 192 IA--VPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               V  SDFY+Y+ KY   +    V+PA IP +I  +++ +A  A+Q +GC G++R D 
Sbjct: 244 CGEIVLNSDFYAYDTKYIDDDGAKVVVPAAIPAEINDKIREIAVKAYQTLGCAGMARVD- 302

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           +F  L   V   EIN  PG T +S++P++   +G S+ +L+  ++E
Sbjct: 303 VFLTLENDVVINEINTLPGFTNISMYPKLWQASGLSYTDLITRLIE 348


>gi|78185108|ref|YP_377543.1| D-alanyl-alanine synthetase A [Synechococcus sp. CC9902]
 gi|123580800|sp|Q3AV89|DDL_SYNS9 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|78169402|gb|ABB26499.1| D-alanine--D-alanine ligase [Synechococcus sp. CC9902]
          Length = 350

 Score =  134 bits (336), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 98/343 (28%), Positives = 165/343 (48%), Gaps = 49/343 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDA----GFKVSQIDVDRS--------VGLVLAH 48
           + ++ GG S E EVS+ S       L        ++V    +D+            VLA 
Sbjct: 8   IGLVFGGYSGEHEVSIRSATTVIHGLRSGENSQRYRVIPFYIDQEGRWWGEAFANRVLAS 67

Query: 49  LKP----------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
            KP                       + + VLHG  GEDG VQ + +L+  P+  +G+L 
Sbjct: 68  QKPIEPPHSIETKGFRELPEGSETVQVWYPVLHGPNGEDGTVQGLFQLMRQPFVGAGVLG 127

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-DS---QHLISP-------PYVIKPLKG 135
           SA+SMDK+  K   +  G+   P + +N   + DS   +H++         P  +KP   
Sbjct: 128 SAVSMDKLAMKAAFAGAGLSQVPYVGLNASDLGDSARREHVLDRIEAELHYPCFVKPANL 187

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195
           GSS+GI  ++    +   L  ++  +   +L++EQ VD  EL C V+G   L  + +   
Sbjct: 188 GSSVGISKVRNRHELETGLDHAAQLD--PRLVVEQGVDARELECAVLGRHQLRSSVVGEV 245

Query: 196 K--SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
           +  +D+Y Y  KY++  ST V+PA++P  + + VQ+ A  A  A+G  G++R DF +D  
Sbjct: 246 RFDADWYDYTTKYTAGLSTTVIPAELPEGVAERVQQQALEACAALGVVGMARVDFFYDNT 305

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           S +++  EIN  PG T  S++P +   +G +  +L+  +V+ A
Sbjct: 306 SHQLWINEINTLPGFTSQSMYPMLWEASGVTLDQLVHKLVQSA 348


>gi|194432541|ref|ZP_03064827.1| D-alanine--D-alanine ligase A [Shigella dysenteriae 1012]
 gi|194419102|gb|EDX35185.1| D-alanine--D-alanine ligase A [Shigella dysenteriae 1012]
 gi|332085641|gb|EGI90805.1| D-alanine--D-alanine ligase [Shigella dysenteriae 155-74]
          Length = 364

 Score =  134 bits (336), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 92/349 (26%), Positives = 169/349 (48%), Gaps = 61/349 (17%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD--------------------- 39
           + ++ GG S+E EVSL S K    A++ + F V  + +D                     
Sbjct: 6   VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPA 65

Query: 40  ----RSVGLVLAHL--------------KP----DLAFNVLHGNFGEDGLVQAILELLEI 77
               R     LA +              +P    D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  HIALRPSATTLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS---------PPY 128
           P+  S +LASA  MDK  +K+++   G+ + P I + R    ++H IS          P 
Sbjct: 126 PFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRA---NRHNISFAEVESKLGLPL 182

Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD 188
            +KP   GSS+G+  +  ++   + +  +  ++H  ++++EQ + G E+ C ++G+ +  
Sbjct: 183 FVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDH--KVIVEQGIKGREIECAILGNDNPQ 240

Query: 189 VTEIA--VPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
            +     V  SDFY+Y+ KY   +    V+PA I  +I  +++ +A  ++Q +GC G++R
Sbjct: 241 ASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQSYQTLGCAGMAR 300

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            D    P   +V   EIN  PG T +S++P++   +G  + +L+  ++E
Sbjct: 301 VDVFLTP-ENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIE 348


>gi|315937026|gb|ADU56035.1| hypothetical protein CA37-12 [uncultured organism CA37]
          Length = 368

 Score =  134 bits (336), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 99/304 (32%), Positives = 152/304 (50%), Gaps = 18/304 (5%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62
           VL GG+S EREVSL SG+    AL      V   D+   +   L    P +   VLHGN 
Sbjct: 9   VLAGGLSLEREVSLRSGRRVFDALRGLDVDVEFGDLGPDLMRALIADPPSVVLPVLHGNP 68

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---FTMD 119
           GEDG V+ +LEL+ +PY  +   A  L+ DK  +K +V+  G+    S+ + R     + 
Sbjct: 69  GEDGTVREVLELVGVPYVGASAEACRLAFDKPLAKALVARAGLGTPASVTLPREAFHDLG 128

Query: 120 SQHLIS-------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
           +  LIS        P  +KP  GGS+ G+  ++    +P  L+   +++  D  LIE+ V
Sbjct: 129 AAPLISLILKRLGLPLFVKPRAGGSAFGVGHVQDADQLPAALMACFAYH--DTALIERAV 186

Query: 173 DGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
            G+E+  GV+    G  ++   EI VP+   Y Y   Y++  +    PA++       V 
Sbjct: 187 TGVEVAVGVVDLGEGPVAMPAVEI-VPRRGIYDYSAHYTAGATEFFCPARLSDRAAAAVA 245

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           + A  AH+A+G R +SR+D + D    ++F LE  V PG+T  S F    A  GY+F  +
Sbjct: 246 QAALTAHRALGLRDLSRTDLIVDK-DDQLFVLETAVAPGLTDTSTFAMGLAAKGYAFARV 304

Query: 289 LLWM 292
            L +
Sbjct: 305 WLQL 308


>gi|18476138|gb|AAK58489.1| D-alanine-D-serine ligase VanC3 [Enterococcus casseliflavus]
          Length = 350

 Score =  134 bits (336), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 80/249 (32%), Positives = 137/249 (55%), Gaps = 11/249 (4%)

Query: 49  LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
           L PD+ F ++HG +GEDG +Q + EL+++PY   G+  SAL M+K    Q  ++ GV   
Sbjct: 93  LVPDVLFPIMHGKYGEDGSIQGMFELMKLPYVGCGVAGSALCMNKWLLHQAAAAIGVQSA 152

Query: 109 PSILVNRFTMDSQHLIS------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
           P+IL+       + + +       P   KP + GSS GI  +   + I   L    ++ +
Sbjct: 153 PTILLTNHANQQEQIEAFIQTHGFPVFFKPNEAGSSKGITKVTCVEEIASAL--KEAFTY 210

Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVTEI-AVPKSD-FYSYELKYSSLNSTHVLPAKIP 220
              +L+++ + G+E+ CG++G+ SL V    A+   D F+ +E KY  +++   +PA +P
Sbjct: 211 CSAVLLQKNIAGVEIGCGILGNDSLTVGACDAISLVDGFFDFEEKYQLISAKITVPAPLP 270

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280
             I  +V+  A L ++++G +G++R DF F     +++  EIN  PG T  S +P M A 
Sbjct: 271 ETIETKVKEQAQLLYRSLGLKGLARIDF-FVTDQGELYLNEINTMPGFTSHSRYPAMMAA 329

Query: 281 AGYSFRELL 289
            G S++ELL
Sbjct: 330 VGLSYQELL 338


>gi|160944621|ref|ZP_02091848.1| hypothetical protein FAEPRAM212_02134 [Faecalibacterium prausnitzii
           M21/2]
 gi|158443805|gb|EDP20809.1| hypothetical protein FAEPRAM212_02134 [Faecalibacterium prausnitzii
           M21/2]
          Length = 364

 Score =  134 bits (336), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 76/249 (30%), Positives = 131/249 (52%), Gaps = 13/249 (5%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+   VLHG +GEDG VQ +LEL  I Y   G+LAS++ MDK  +  +  + GVP    +
Sbjct: 102 DVVIPVLHGLWGEDGTVQGLLELAGIAYVGCGVLASSVCMDKAVANALFEANGVPHTKWV 161

Query: 112 LVNRFTMDS---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
             NR+ ++          +  +  P  +KP   GSS+GI  +   + +   +  + +  +
Sbjct: 162 AANRWEIEKDLEGVCAGVEQKLGWPVFVKPANAGSSVGISKVSNQEELKAAI--ALALEN 219

Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVTEIA--VPKSDFYSYELKYSSLNSTHVLPAKIP 220
             +++ E +VDG E+ C V+G      T     +  ++FY+Y+ KY +  S  V+PA +P
Sbjct: 220 DRKVVFEAFVDGQEVECAVIGSDPAVATRPGEILAGAEFYTYDDKYKNGVSQTVIPAHLP 279

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280
                EV+  A +A+ A+ C G++R DF  +  + +V   EIN  PG T +S++P++  +
Sbjct: 280 EAKLDEVKTYAAMAYTALNCEGLARCDFFVEKNTGRVLINEINTFPGFTAISMYPKLMEH 339

Query: 281 AGYSFRELL 289
            G    +L+
Sbjct: 340 EGLPVPQLI 348


>gi|158312982|ref|YP_001505490.1| D-alanyl-alanine synthetase A [Frankia sp. EAN1pec]
 gi|158108387|gb|ABW10584.1| D-alanine--D-alanine ligase [Frankia sp. EAN1pec]
          Length = 367

 Score =  134 bits (336), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 85/263 (32%), Positives = 141/263 (53%), Gaps = 17/263 (6%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+ F +LHG FGEDG +Q +LE+  +PY  SG+ ASA +MDK   K ++++ G+PV P  
Sbjct: 108 DVVFPLLHGPFGEDGTIQGLLEMAGLPYVGSGVFASAAAMDKQHMKSMLAAAGLPVGPYA 167

Query: 112 LV---NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168
           ++      +   +  +  P  +KP +GGSS+GI   + D    LD    ++     + L+
Sbjct: 168 VLRPGQALSEPDRERLGLPVFVKPARGGSSIGI--SRVDAWADLDTALKTARASDPKTLV 225

Query: 169 EQYVDGIELTCGVMGDASLDVTEIAVP-------KSDFYSYELKYSSLNSTHVLPAKIPL 221
           E  V G E+ CGV+        + +VP        + FY +E KY S  +   +PA++P 
Sbjct: 226 EAAVVGREIECGVLDSLDGSGPQASVPAEVTITSSAGFYDFEAKYLSDGAVFDVPARLPG 285

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYA 281
           ++ + V+  A  A +A+ C G++R D    P S ++   E+N  PG TP+S++P M A +
Sbjct: 286 ELTERVRAAAVAAFEALDCAGLARVDMFVTP-SGEIVLNEVNTMPGFTPMSMYPRMWAAS 344

Query: 282 GYSFRELLLWMVE----DASCLR 300
           G  +  L+  +V+    D + LR
Sbjct: 345 GIDYAALVDRLVQLALRDGAGLR 367


>gi|325571358|ref|ZP_08146858.1| D-alanine--D-alanine ligase [Enterococcus casseliflavus ATCC 12755]
 gi|325155834|gb|EGC68030.1| D-alanine--D-alanine ligase [Enterococcus casseliflavus ATCC 12755]
          Length = 350

 Score =  133 bits (335), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 83/250 (33%), Positives = 137/250 (54%), Gaps = 13/250 (5%)

Query: 49  LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
           L PD+ F ++HG +GEDG +Q + EL+++PY   G+ ASAL M+K    Q  ++ GV   
Sbjct: 93  LVPDVLFPIMHGKYGEDGSIQGLFELMKLPYVGCGVAASALCMNKWLLHQAAAAIGVQSA 152

Query: 109 PSILVNRFTMDSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN 161
           P+IL+     + Q  I         P   KP + GSS GI  +   + I   L    ++ 
Sbjct: 153 PTILLTN-QANQQDQIEAFIQTHGFPVFFKPNEAGSSKGITKVTCVEEIASAL--KEAFT 209

Query: 162 HGDQLLIEQYVDGIELTCGVMGDASLDVTEI-AVPKSD-FYSYELKYSSLNSTHVLPAKI 219
           +   +L+++ + G+E+ CG++G+ SL V    A+   D F+ +E KY  +++   +PA +
Sbjct: 210 YCSAVLLQKNIAGVEIGCGILGNDSLTVGACDAISLVDGFFDFEEKYQLISAKITVPAPL 269

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279
           P  I  +V+  A L + ++G +G++R DF F     +++  EIN  PG T  S +P M A
Sbjct: 270 PETIETKVKEQAQLLYHSLGLKGLARIDF-FVTDQGELYLNEINTMPGFTSHSRYPAMMA 328

Query: 280 YAGYSFRELL 289
             G S++ELL
Sbjct: 329 AIGLSYQELL 338


>gi|189464335|ref|ZP_03013120.1| hypothetical protein BACINT_00676 [Bacteroides intestinalis DSM
           17393]
 gi|189438125|gb|EDV07110.1| hypothetical protein BACINT_00676 [Bacteroides intestinalis DSM
           17393]
          Length = 324

 Score =  133 bits (335), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 90/323 (27%), Positives = 160/323 (49%), Gaps = 33/323 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---DRSVGLVLAHLKP------ 51
           +A++ GG +SE +VSL S +   S ++   + +  +++   D  V L   +  P      
Sbjct: 5   IAIVCGGDTSEFQVSLRSAQGIYSFIDKEKYTLYIVEMHGLDWHVQLPDGNKAPIDRNDF 64

Query: 52  -----------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
                      D A+  +HG  GEDG +Q   +LL IPY+  G+LA+AL+ DK    Q +
Sbjct: 65  SFQVDGKKVTFDFAYITIHGTPGEDGRLQGYFDLLHIPYSCCGVLAAALTYDKFACNQYL 124

Query: 101 SSCGVPVCPSILVNRFTM----DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
              GV +  S+++ +       D    I  P  IKP  GGSS G+  +K  + I   +++
Sbjct: 125 KVFGVRIAESLVLRQGQSISDEDVIEKIGLPCFIKPSLGGSSFGVTKVKTKEQIQPAIVK 184

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDAS----LDVTEIAVPKSDFYSYELKYSSLNST 212
             ++    ++L+E +++G E+TCG            +TE+ V +++F+ Y+ KY+    +
Sbjct: 185 --AFGEAQEVLVEAFMEGTEVTCGCYKTKKNSVVFPITEV-VTENEFFDYDAKYNG-QVS 240

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
            + PA+I  D+   +Q L    +  +G  GI R D++      K+  LE+N  PGMT  S
Sbjct: 241 EITPARISDDLTHRIQTLTSAIYDILGASGIIRVDYII-TAGDKINLLEVNTTPGMTATS 299

Query: 273 IFPEMAAYAGYSFRELLLWMVED 295
             P+    AG   ++++  ++E+
Sbjct: 300 FIPQQVRAAGLDIKDVMTDIIEN 322


>gi|309809166|ref|ZP_07703039.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus iners
           SPIN 2503V10-D]
 gi|308170611|gb|EFO72631.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus iners
           SPIN 2503V10-D]
          Length = 360

 Score =  133 bits (335), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 99/336 (29%), Positives = 164/336 (48%), Gaps = 51/336 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALE------------DAGFKVSQID----------- 37
           + ++ GG SSE EVS+ SG+    A++            + GF  S  D           
Sbjct: 7   VGLIFGGNSSEYEVSIISGRNIYKAIDKEKYDVYPMWITNTGFLASDADSRKVLEDPTYQ 66

Query: 38  ------VDRSVGLVLAHLKP--DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
                 V     ++    +P  D+ F ++HGN GEDG +Q +L +L+ P+    +LA+A+
Sbjct: 67  IENPHTVTNISNVIELSNRPEIDVFFPIVHGNLGEDGCLQGLLRILDKPFVGDDVLAAAI 126

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYV---------IKPLKGGSS 138
           +MDK  +K +    GVPV   I + RF  +      +S  YV         +KP   GSS
Sbjct: 127 TMDKELNKIMAQRAGVPVADWISIKRFEYNDAKNEKLSYDYVSQKLGTDLFVKPSNQGSS 186

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVP 195
           +GI  +         L +  ++ + D++L+E+ + G E+   V+G+    V+   +I   
Sbjct: 187 VGISHVTSAADYEKALAE--AFKYDDKVLVEETIKGTEVETAVLGNDDAIVSGVGQITNA 244

Query: 196 KSDFYSYELKYSSLNSTHVL--PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
           +  +YSYE KY+  NST  L  PA +P +I + V+R A   + A  C G++R D +    
Sbjct: 245 QGSWYSYENKYND-NSTSKLQIPAALPSEIIETVRRQALKVYHATECSGLARVDSMLSS- 302

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
             KV + E+N  PG T +S++P++    G S+ EL+
Sbjct: 303 DNKVIFNELNSLPGFTNISMYPKLFEQVGISYTELI 338


>gi|295104375|emb|CBL01919.1| D-alanine--D-alanine ligase [Faecalibacterium prausnitzii SL3/3]
          Length = 364

 Score =  133 bits (335), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 76/249 (30%), Positives = 131/249 (52%), Gaps = 13/249 (5%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+   VLHG +GEDG VQ +LEL  I Y   G+LAS++ MDK  +  +  + GVP    +
Sbjct: 102 DVVIPVLHGLWGEDGTVQGLLELAGIAYVGCGVLASSVCMDKAVANALFEANGVPHTKWV 161

Query: 112 LVNRFTMDS---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
             NR+ ++          +  +  P  +KP   GSS+GI  +   + +   +  + +  +
Sbjct: 162 AANRWEIEKDLEGVCAGVEQKLGWPVFVKPANAGSSVGISKVSSQEELKAAI--ALALEN 219

Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVTEIA--VPKSDFYSYELKYSSLNSTHVLPAKIP 220
             +++ E +VDG E+ C V+G      T     +  ++FY+Y+ KY +  S  V+PA +P
Sbjct: 220 DRKVVFEAFVDGQEVECAVIGSDPAVATRPGEILAGAEFYTYDDKYKNGVSQTVIPAHLP 279

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280
                EV+  A +A+ A+ C G++R DF  +  + +V   EIN  PG T +S++P++  +
Sbjct: 280 EAKLDEVKTYAAMAYTALNCEGLARCDFFVEKNTGRVLINEINTFPGFTAISMYPKLMEH 339

Query: 281 AGYSFRELL 289
            G    +L+
Sbjct: 340 EGLPVPQLI 348


>gi|325498332|gb|EGC96191.1| D-alanine-D-alanine ligase A [Escherichia fergusonii ECD227]
          Length = 370

 Score =  133 bits (335), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 91/346 (26%), Positives = 165/346 (47%), Gaps = 55/346 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD--------------------- 39
           + ++ GG S+E EVSL S K    A++   F V  + +D                     
Sbjct: 12  VGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGIDKQGQWHVSDAANYLLNADDPA 71

Query: 40  ----RSVGLVLAHL--------------KP----DLAFNVLHGNFGEDGLVQAILELLEI 77
               R     LA +              +P    D+ F ++HG  GEDG +Q +L +  +
Sbjct: 72  RIALRPSATSLAQVPGKHEQQLIDAQTAQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 131

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVIK 131
           P+  S +L SA  MDK  +K+++   G+ + P + + R    +      +  +  P  +K
Sbjct: 132 PFVGSDVLGSAACMDKDVTKRLLRDAGLNIAPFVTLTRANRSTITFAEIEAQLGLPLFVK 191

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  +  +      +  +  ++H  ++++E+ + G E+ C V+G+     + 
Sbjct: 192 PANQGSSVGVSKVTNEAEYKKAVDLAFEYDH--KVVVEKGIKGREIECAVLGNDHPQAST 249

Query: 192 IA--VPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               V  SDFY+Y+ KY   +    V+PA IP +I  +++ +A  A+Q +GC G++R D 
Sbjct: 250 CGEIVLNSDFYAYDTKYIDDDGAKVVVPAAIPAEINDKIREIAVKAYQTLGCAGMARVD- 308

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           +F  L   V   EIN  PG T +S++P++   +G S+ +L+  ++E
Sbjct: 309 VFLTLENDVVINEINTLPGFTNISMYPKLWQASGLSYTDLITRLIE 354


>gi|237730347|ref|ZP_04560828.1| D-alanyl-alanine synthetase A [Citrobacter sp. 30_2]
 gi|226905886|gb|EEH91804.1| D-alanyl-alanine synthetase A [Citrobacter sp. 30_2]
          Length = 364

 Score =  133 bits (335), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 93/346 (26%), Positives = 166/346 (47%), Gaps = 55/346 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR--------SVGLVL-----A 47
           + ++ GG S+E EVSL S K    A++   F V  + +D+        +   +L     A
Sbjct: 6   VGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGIDKQGQWHVSDASNYLLNSNDPA 65

Query: 48  H--LKP----------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
           H  L+P                            D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  HIALRPSETSLAQVPGKQEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVIK 131
           P+  S +L SA  MDK  +K+++   G+ + P I + R   +S      +  +  P  +K
Sbjct: 126 PFVGSDVLGSAACMDKDVTKRLLRDAGLNIAPFITLTRANRNSISFAEVESRLGLPLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  +  +      +  +  ++H  ++++EQ + G E+ C V+G+     + 
Sbjct: 186 PANQGSSVGVSKVTSEAQYDQAVALAFEFDH--KVVVEQGIKGREIECAVLGNDHPQAST 243

Query: 192 IA--VPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               V  SDFY+Y+ KY   N    V+PA I  +I  +++ +A  A+Q +GC G++R D 
Sbjct: 244 CGEIVLNSDFYAYDTKYIDDNGAKVVVPAAIAPEINDKIREIAIQAYQTLGCAGMARVD- 302

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           +F      V   EIN  PG T +S++P++   +G  + +L+  ++E
Sbjct: 303 VFLTAENDVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIE 348


>gi|218131975|ref|ZP_03460779.1| hypothetical protein BACEGG_03598 [Bacteroides eggerthii DSM 20697]
 gi|217985851|gb|EEC52191.1| hypothetical protein BACEGG_03598 [Bacteroides eggerthii DSM 20697]
          Length = 324

 Score =  133 bits (335), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 92/323 (28%), Positives = 157/323 (48%), Gaps = 33/323 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKV-----------------SQIDVDR--- 40
           +A+  GG +SE EVSL S +   S ++   + +                 ++  VDR   
Sbjct: 5   IAIACGGDTSEFEVSLRSAQGIYSFIDKEKYTLYIVEMHGLDWHVQLPDGTKTPVDRNDF 64

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           S  L    +  D  +  +HG  GEDG +Q  L++L IPY+  G+LA+AL+ DK    Q +
Sbjct: 65  SFRLGGEKVVFDFVYITIHGTPGEDGRLQGYLDMLHIPYSCCGVLAAALTYDKFACNQYL 124

Query: 101 SSCGVPVCPSILVNRFTMDSQH----LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
            + GV +  S+L+ +    S       I  P  IKP  GGSS G+  +K  + I   +  
Sbjct: 125 KAFGVRIADSLLLRQGQSVSDEDVIGKIGLPCFIKPSLGGSSFGVTKVKTREEIQPAI-- 182

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDAS----LDVTEIAVPKSDFYSYELKYSSLNST 212
             ++    ++L+E ++ G E+TCG            +TE+ V  ++++ Y+ KY+   S 
Sbjct: 183 EKAFKEAREVLVEAFMQGTEITCGCYKTKEKSVVFPITEV-VSHNEYFDYKAKYNG-ESD 240

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
            + PA+IP ++   VQ+L    +  +G  GI R D++      K+  LE+N  PGMT  S
Sbjct: 241 EITPARIPDELRDRVQKLTSAIYDILGAAGIIRVDYIITE-GEKINLLEVNTTPGMTATS 299

Query: 273 IFPEMAAYAGYSFRELLLWMVED 295
             P+    A    ++++  ++E+
Sbjct: 300 FIPQQVRAANLDIKDVMTDIIEN 322


>gi|163839625|ref|YP_001624030.1| D-alanine--D-alanine ligase [Renibacterium salmoninarum ATCC 33209]
 gi|162953101|gb|ABY22616.1| D-alanine--D-alanine ligase [Renibacterium salmoninarum ATCC 33209]
          Length = 365

 Score =  133 bits (335), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 106/327 (32%), Positives = 166/327 (50%), Gaps = 33/327 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKV--------SQIDVDRSVGLVLAHLK-- 50
           +AV+ GG+SSE +VSL+S +   +A    G +V         +  VD   G   A  K  
Sbjct: 36  IAVIGGGVSSEHDVSLASSEGTRAAAAALGHRVHFFLIDSDGEWSVDGVPGTTAAWEKLR 95

Query: 51  -PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109
             DLA  ++HG  GEDG++Q  LE + + Y  SG+L+SA+ +DK  +K V  + GV   P
Sbjct: 96  SCDLAIPMVHGAGGEDGVLQGFLETVGVSYFGSGVLSSAVGLDKQVTKLVAHTVGVRTAP 155

Query: 110 SILVNRFTMD--------SQHL-----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
            + ++    D        +++L     I  P  +KPL+GGSS GI  + +  ++  D ++
Sbjct: 156 GLTIDATLRDQLAETPDQAENLLKSAKIELPVFVKPLRGGSSFGISKVTEQLNLA-DAVK 214

Query: 157 SSSWNHGDQ-LLIEQYVDGIELTCGVMG--DASLDVTE----IAVPKSDFYSYELKYSSL 209
            ++    +Q +LIE  V G E+  GV+   D S+ V      +A  K +F+S E KYSS 
Sbjct: 215 LAAHGPVEQDVLIEPEVRGKEVDVGVLELPDCSVIVGPCLQVLADSKEEFFSTEAKYSST 274

Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
            +  ++PA I  +    ++  A     A+GCRG++R DF  D         EIN  PG T
Sbjct: 275 ETRFLVPAPIGDEASAAIRAQAKAVFTALGCRGLARVDFFVDDDGTATLN-EINTLPGFT 333

Query: 270 PVSIFPEMAAYAGYSFRELLLWMVEDA 296
             S  P + A AG ++  L+  ++E A
Sbjct: 334 SHSQVPRIWAAAGVNYEGLVAIIIETA 360


>gi|313122929|ref|YP_004033188.1| d-alanine-d-alanine ligase a [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
 gi|312279492|gb|ADQ60211.1| D-alanine-D-alanine ligase A [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
          Length = 362

 Score =  133 bits (335), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 94/340 (27%), Positives = 171/340 (50%), Gaps = 49/340 (14%)

Query: 1   MAVLMGGISSEREVSLSS-----------------------GKACASA-----LEDAGFK 32
           + ++ GG SSE EVS++S                       G   + A     LE+ G+ 
Sbjct: 7   VGLIFGGNSSEYEVSITSAGNIYKEIDKDKFDVHPIWITNSGYVASEADSYKVLEEPGYM 66

Query: 33  VSQIDVDRSV-GLVLAHLKP--DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
           V + D   ++  L+    +P  D+ F ++HGN GEDG++Q +  L++ P+    +LA+A+
Sbjct: 67  VEKTDKTANLSNLIELASRPELDVLFPIVHGNLGEDGVLQGLFRLIDKPFVGVDVLAAAV 126

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMD------------SQHLISPPYVIKPLKGGS 137
           +MDK  +K +    GVPV   + + R+  +            S  L +    +KP   GS
Sbjct: 127 TMDKEFTKILAQRAGVPVAKWVSIKRYEYEDAKNQKLSYDWVSGQLGTSNLFVKPSNQGS 186

Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS---LDVTEIAV 194
           S+GI  +  D +    L +  ++ + D++L+E+ + G E+   V+G+       V  I  
Sbjct: 187 SVGITHVTDDSNYAEALAE--AFKYDDKVLVEEGIVGTEVETAVLGNDHPVVSGVGRIIN 244

Query: 195 PKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
             + +YSYE KYS+ ++T + +PA+IP +  ++VQ  A   +Q   C G++R D +    
Sbjct: 245 ADNTWYSYENKYSTESTTTLQIPAQIPAETAEKVQENALKIYQITECSGMARIDSMLRES 304

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
             +V + E+N  PG T +S++P++   AG S+ +L+  ++
Sbjct: 305 DGEVIFNELNALPGFTNISMYPKLFEEAGISYPDLITRLI 344


>gi|145295462|ref|YP_001138283.1| D-alanyl-alanine synthetase A [Corynebacterium glutamicum R]
 gi|166198482|sp|A4QDT4|DDL_CORGB RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|140845382|dbj|BAF54381.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 360

 Score =  133 bits (335), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 84/260 (32%), Positives = 139/260 (53%), Gaps = 23/260 (8%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+ F VLHG FGEDG VQ +  L +IP    G+LASA  MDK  +K+++++ G+P+   +
Sbjct: 104 DVIFPVLHGRFGEDGTVQGLFALSDIPVVGPGVLASAAGMDKEYTKKLMAAEGLPIGREV 163

Query: 112 LV---NRFTMDSQHLISPPYVIKPLKGGSSLGI--IVIKKDQSIPLDLLQSSSWNHGDQL 166
           ++      T   ++L+  P  +KP +GGSS+GI  +   +D +  + L ++    H +++
Sbjct: 164 ILRDRTELTEAEKNLLGLPVFVKPARGGSSIGISRVTAWEDFNKAVGLARA----HDEKV 219

Query: 167 LIEQYVDGIELTCGVMG----------DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216
           ++E  + G E+ CGV+            A L  TE       FY ++ KY     T  +P
Sbjct: 220 IVESEIVGSEVECGVLQYPDGRIVASVPALLSGTESGA--GGFYDFDTKYLDNVVTAEIP 277

Query: 217 AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPE 276
           A +     + +Q LA  + QA+ C G++R DF     +      EIN  PG TP+S++P+
Sbjct: 278 APLDEKTTELIQSLAVESFQALACEGLARVDFFV--TANGPVLNEINTMPGFTPISMYPQ 335

Query: 277 MAAYAGYSFRELLLWMVEDA 296
           M   +G ++ ELL  +V+ A
Sbjct: 336 MFTASGVAYEELLDVLVQQA 355


>gi|300811464|ref|ZP_07091958.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus
           delbrueckii subsp. bulgaricus PB2003/044-T3-4]
 gi|300497537|gb|EFK32565.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus
           delbrueckii subsp. bulgaricus PB2003/044-T3-4]
          Length = 362

 Score =  133 bits (335), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 93/340 (27%), Positives = 169/340 (49%), Gaps = 49/340 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASA----------------------------LEDAGFK 32
           + ++ GG SSE EVS++S      A                            LE+ G+ 
Sbjct: 7   VGLIFGGNSSEYEVSITSAGNIYKAIDKDKFDVHPIWITNSGYVASEADSYKVLEEPGYM 66

Query: 33  VSQIDVDRSV-GLVLAHLKP--DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
           V + D   ++  L+    +P  D+ F ++HGN GEDG++Q +  L++ P+    +LA+A+
Sbjct: 67  VEKNDKTANLSNLIELASRPELDVLFPIVHGNLGEDGVLQGLFRLIDKPFVGVDVLAAAV 126

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMD------------SQHLISPPYVIKPLKGGS 137
           +MDK  +K +    GVPV   + + R+  +            S  L +    +KP   GS
Sbjct: 127 TMDKEFTKILAQRAGVPVAKWVSIKRYEYEDAKNQKLSYDWVSGQLGTSNLFVKPSNQGS 186

Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS---LDVTEIAV 194
           S+GI  +  D +    L +  ++ + D++L+E+ + G E+   V+G+       V  I  
Sbjct: 187 SVGITHVTDDSNYAEALAE--AFKYDDKVLVEEGIVGTEVETAVLGNDHPVVSGVGRIIN 244

Query: 195 PKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
             + +YSYE KYS+ ++T + +PA+IP +  ++VQ  A   +Q   C G++R D +    
Sbjct: 245 ADNTWYSYENKYSTESTTTLQIPAQIPAETAEKVQENALKIYQVTECSGMARVDSMLRES 304

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
             +V + E+N  PG T +S++P++   AG S+ +L+  ++
Sbjct: 305 DGEVIFNELNALPGFTNISMYPKLFEEAGISYPDLITRLI 344


>gi|238787931|ref|ZP_04631727.1| D-alanine--D-alanine ligase [Yersinia frederiksenii ATCC 33641]
 gi|238723879|gb|EEQ15523.1| D-alanine--D-alanine ligase [Yersinia frederiksenii ATCC 33641]
          Length = 359

 Score =  133 bits (335), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 98/348 (28%), Positives = 163/348 (46%), Gaps = 63/348 (18%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD----------------------- 39
           ++ GG S+E EVSL S K    A++   F V+ + +D                       
Sbjct: 1   MVFGGKSAEHEVSLQSAKNIVDAIDKEKFDVTLLGIDKQGQWHVNDASSYLLNAENPALI 60

Query: 40  ------RSVGLV----------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEI 77
                 R+V L+                LA L  D+ F ++HG  GEDG +Q +L +  I
Sbjct: 61  SLNHSNRNVALIPGQASQQLITTDNASALAQL--DVIFPIVHGTLGEDGSLQGLLRMANI 118

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIK 131
           P+  SG++ SA+SMDK  +K+++   G+ + P I + R              +  P  IK
Sbjct: 119 PFVGSGVVGSAVSMDKDITKRLLRDAGLNIAPFITLTRANQGHYSFEQVTAKLGLPLFIK 178

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD----ASL 187
           P   GSS+G+  ++ +      +  +  ++H  ++L+E  + G E+ C VMG+    ASL
Sbjct: 179 PANQGSSVGVSKVRNEAEYQRAVALAFDFDH--KVLVESAIVGREIECAVMGNDHPQASL 236

Query: 188 DVTEIAVPKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRS 246
              E+ +   +FYSY+ KY +     V +PA I  D+   ++ +A  A QA+ C G++R 
Sbjct: 237 -CGEVVI-SDEFYSYDTKYINETGAQVIIPAAIDTDVSDRIRAVALAAFQALECCGMARV 294

Query: 247 DFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           D    P    +   EIN  PG T +S++P++    G    EL+  ++E
Sbjct: 295 DVFLTP-DNCIVINEINTLPGFTNISMYPKLWRATGVGSTELITRLIE 341


>gi|291547309|emb|CBL20417.1| D-alanine--D-alanine ligase [Ruminococcus sp. SR1/5]
          Length = 371

 Score =  133 bits (335), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 94/339 (27%), Positives = 161/339 (47%), Gaps = 50/339 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV----------------DRSVGL 44
           + VL GG S+ERE+S+ +G     AL   G     +D+                D  V  
Sbjct: 28  IVVLAGGTSTEREISIVTGTGVCKALRKKGHNAILVDIFCGLEPVDWDEPFGDKDYEVDS 87

Query: 45  VLAHLK---------------------------PDLAFNVLHGNFGEDGLVQAILELLEI 77
              +++                            D+ F  LHG+ GEDG VQA  +LL I
Sbjct: 88  AAEYMRSFDDDIEEIKRTRRSFFGPNVLELCQAADIVFMGLHGSNGEDGKVQATFDLLGI 147

Query: 78  PYTHSGILASALSMDKMRSKQV--VSSCGVPVCPSILVNRFTMDSQHL-ISPPYVIKPLK 134
            YT +G L+SAL+MDK  +K++  +     P   S+L    T +   L +  P V+K   
Sbjct: 148 RYTGTGYLSSALAMDKGLTKKIFLMDQVPTPKGVSMLKENCTRNIHDLGMEFPVVVKTCC 207

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194
           GGSS+G+ ++   +     +    ++++ D++++E+Y+ G E +  V+   +  + EIA 
Sbjct: 208 GGSSVGVYIVNNQKEYEDAI--DGAYSYEDEVVVEEYIRGREFSVAVVDGKAYPIIEIA- 264

Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
           PK  FY Y+ KY + ++    PA+I  ++ +++Q  A    +A+   G +R DF+    +
Sbjct: 265 PKQGFYDYKNKYQAGSTVETCPAEISPELTEKMQHYAEAGAKALCIEGYARFDFMMKE-N 323

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
             ++ LE N  PGMTP S+ P+ A   G  + +L   ++
Sbjct: 324 GDMYCLEANTLPGMTPTSLIPQEAKVLGIDYPDLCEELI 362


>gi|161779881|gb|ABX79433.1| VanC2/3 [Enterococcus casseliflavus]
          Length = 350

 Score =  133 bits (335), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 82/250 (32%), Positives = 137/250 (54%), Gaps = 13/250 (5%)

Query: 49  LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
           L PD+ F ++HG +GEDG +Q + EL+++PY   G+  SAL M+K    Q  ++ GV   
Sbjct: 93  LVPDVLFPIMHGKYGEDGSIQGLFELMKLPYVGCGVAGSALCMNKWLLHQAAAAIGVQSA 152

Query: 109 PSILVNRFTMDSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN 161
           P+IL+     + Q  I         P   KP + GSS GI  +   + I   L    ++ 
Sbjct: 153 PTILLTN-QANQQEQIEAFIQTHGFPVFFKPNEAGSSKGITKVTCVEEIASAL--KEAFT 209

Query: 162 HGDQLLIEQYVDGIELTCGVMGDASLDVTEI-AVPKSD-FYSYELKYSSLNSTHVLPAKI 219
           +   +L+++ + G+E+ CG++G+ SL V    A+   D F+ +E KY  +++   +PA +
Sbjct: 210 YCSAVLLQKNIAGVEIGCGILGNDSLTVGACDAISLVDGFFDFEEKYQLISAKITVPAPL 269

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279
           P  I  +V+  A L ++++G +G++R DF F     +++  EIN  PG T  S +P M A
Sbjct: 270 PETIETKVKEQAQLLYRSLGLKGLARIDF-FVTDQGELYLNEINTMPGFTSHSRYPAMMA 328

Query: 280 YAGYSFRELL 289
             G S++ELL
Sbjct: 329 AVGLSYQELL 338


>gi|161779876|gb|ABX79430.1| VanC2/3 [Enterococcus casseliflavus]
          Length = 350

 Score =  133 bits (335), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 82/250 (32%), Positives = 137/250 (54%), Gaps = 13/250 (5%)

Query: 49  LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
           L PD+ F ++HG +GEDG +Q + EL+++PY   G+  SAL M+K    Q  ++ GV   
Sbjct: 93  LVPDVLFPIMHGKYGEDGSIQGLFELMKLPYVGCGVAGSALCMNKWLLHQAAAAIGVQSA 152

Query: 109 PSILVNRFTMDSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN 161
           P+IL+     + Q  I         P   KP + GSS GI  +   + I   L    ++ 
Sbjct: 153 PTILLTN-QANQQEQIEAFIQTHGFPVFFKPNEAGSSKGITKVTCVEEIASAL--KEAFT 209

Query: 162 HGDQLLIEQYVDGIELTCGVMGDASLDVTEI-AVPKSD-FYSYELKYSSLNSTHVLPAKI 219
           +   +L+++ + G+E+ CG++G+ SL V    A+   D F+ +E KY  +++   +PA +
Sbjct: 210 YCSAVLLQKNIAGVEIGCGILGNDSLTVGACDAISLVDGFFDFEEKYQLISAKITVPAPL 269

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279
           P  I  +V+  A L ++++G +G++R DF F     +++  EIN  PG T  S +P M A
Sbjct: 270 PETIETKVKEQAQLLYRSLGLKGLARIDF-FVTDQGELYLNEINTMPGFTSHSRYPAMMA 328

Query: 280 YAGYSFRELL 289
             G S++ELL
Sbjct: 329 AVGLSYQELL 338


>gi|161779861|gb|ABX79420.1| VanC2/3 [Enterococcus casseliflavus]
          Length = 350

 Score =  133 bits (335), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 82/250 (32%), Positives = 137/250 (54%), Gaps = 13/250 (5%)

Query: 49  LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
           L PD+ F ++HG +GEDG +Q + EL+++PY   G+  SAL M+K    Q  ++ GV   
Sbjct: 93  LVPDVLFPIMHGKYGEDGSIQGLFELMKLPYVGCGVAGSALCMNKWLLHQAAAAIGVQSA 152

Query: 109 PSILVNRFTMDSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN 161
           P+IL+     + Q  I         P   KP + GSS GI  +   + I   L    ++ 
Sbjct: 153 PTILLTN-QANQQEQIEAFIQTHGFPVFFKPNEAGSSKGITKVTCVEEIASAL--KEAFT 209

Query: 162 HGDQLLIEQYVDGIELTCGVMGDASLDVTEI-AVPKSD-FYSYELKYSSLNSTHVLPAKI 219
           +   +L+++ + G+E+ CG++G+ SL V    A+   D F+ +E KY  +++   +PA +
Sbjct: 210 YCSAVLLQKNIAGVEIGCGILGNDSLTVGACDAISLVDGFFDFEEKYQLISAKITVPAPL 269

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279
           P  I  +V+  A L ++++G +G++R DF F     +++  EIN  PG T  S +P M A
Sbjct: 270 PETIETKVKEQAQLLYRSLGLKGLARIDF-FVTDQGELYLNEINTMPGFTSHSRYPAMMA 328

Query: 280 YAGYSFRELL 289
             G S++ELL
Sbjct: 329 AVGLSYQELL 338


>gi|304560494|gb|ADM43158.1| D-alanine--D-alanine ligase [Edwardsiella tarda FL6-60]
          Length = 367

 Score =  133 bits (335), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 96/346 (27%), Positives = 165/346 (47%), Gaps = 55/346 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS------------------V 42
           + ++ GG S E EVSL S K    A++ + F V+ I +D+                    
Sbjct: 6   VGIVFGGQSCEHEVSLQSAKNIVEAIDQSRFDVTLIGIDKQGYWHLCGGQDYLNHAQDPQ 65

Query: 43  GLVLAHLKPDLA-------------------------FNVLHGNFGEDGLVQAILELLEI 77
            + L H +  LA                         F ++HG  GEDG +Q +L++L +
Sbjct: 66  HIALNHSERRLAVIPGATQGQLIDSASGEPLPSLDVIFPIVHGTQGEDGCLQGMLKMLNL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---DSQHLIS---PPYVIK 131
           P+  S ++ SA  MDK   K+++   G+P+ P + + R T    D + L S       +K
Sbjct: 126 PFVGSDVIGSAACMDKEVCKRLLRDAGLPITPFVTLTRATQANYDYETLRSQLGETLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD--ASLDV 189
           P   GSS+G+  ++        +  +  ++H  ++++E+ V G E+ C ++G+  A   V
Sbjct: 186 PANQGSSVGVSKVRNADEYHRAIADALRFDH--KVIVERGVVGREIECAILGNEAAQASV 243

Query: 190 TEIAVPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               V  SDFYSY+ KY S      V+PA +  +  + V+  A  A QA+ CRG++R D 
Sbjct: 244 CGEIVLHSDFYSYDSKYISAQGAQVVVPAAMAPEASERVRHTALRAFQALECRGLARVD- 302

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           +F     +V   EIN  PG T +S++P++   +G  ++ L+  ++E
Sbjct: 303 VFLTEDNEVIINEINTLPGFTNISMYPKLWQASGIGYQALITRLIE 348


>gi|291618995|ref|YP_003521737.1| DdlA [Pantoea ananatis LMG 20103]
 gi|291154025|gb|ADD78609.1| DdlA [Pantoea ananatis LMG 20103]
          Length = 365

 Score =  133 bits (335), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 96/347 (27%), Positives = 169/347 (48%), Gaps = 57/347 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR--------SVGLVLAHLKP- 51
           + ++ GG SSE EVSL S K    A++   F+V  + +D+        +   +L    P 
Sbjct: 6   VGIVFGGKSSEHEVSLQSAKNIVDAIDKTRFEVVLLGIDKQGQWHLNDASNFLLNAENPS 65

Query: 52  ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
                                             D+ F V+HG  GEDG +Q +L +  +
Sbjct: 66  LIALNRTAKQVALIPGEPQNQVIDRKDAHPLSQLDVIFPVVHGTQGEDGSLQGLLRMASL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---DSQHLISP---PYVIK 131
           P+  S +L SA+SMDK  +K+++   G+ V P + V +  M   D + +I+    P  IK
Sbjct: 126 PFVGSDVLGSAVSMDKDVTKRLLRDAGLKVAPWLSVTQAQMNNLDIEAVIARFGLPLFIK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT- 190
           P   GSS+G+  +    +    L    ++   +++LIE+ + G E+ C V+G+   + + 
Sbjct: 186 PANQGSSVGVSKVTTAAAFRAAL--ELAFRFDNKVLIEKGIKGREIECAVLGNDYPEASP 243

Query: 191 --EIAVPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
             E+ V  + FYSY+ KY S    H V+PA IP  + + ++ +A  A  A+ C G++R D
Sbjct: 244 CGEVVVSDA-FYSYDTKYISETGAHTVIPADIPAAVDEAIREVALTAFTALSCFGLARVD 302

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             +     ++   E+N  PG T +S++P++   AG S+++L+  ++E
Sbjct: 303 VFYTE-DGEIIVNEVNTLPGFTNISMYPKLWQAAGLSYQDLITRLIE 348


>gi|161779846|gb|ABX79408.1| VanC4 [Enterococcus casseliflavus]
          Length = 350

 Score =  133 bits (335), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 83/250 (33%), Positives = 137/250 (54%), Gaps = 13/250 (5%)

Query: 49  LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
           L PD+ F ++HG +GEDG +Q + EL+++PY   G+ ASAL M+K    Q  ++ GV   
Sbjct: 93  LVPDVLFPIMHGKYGEDGSIQGMFELMKLPYVGCGVAASALCMNKWLLHQAAAAIGVQSA 152

Query: 109 PSILVNRFTMDSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN 161
           P+IL+     + Q  I         P   KP + GSS GI  +   + I   L    ++ 
Sbjct: 153 PTILLTN-QANQQRQIEAFIQTHGFPVFFKPNEAGSSKGITKVTCVEEIAPAL--KEAFA 209

Query: 162 HGDQLLIEQYVDGIELTCGVMGDASLDVTEI-AVPKSD-FYSYELKYSSLNSTHVLPAKI 219
           +   +L+++ + G+E+ CG++G+ SL V    A+   D F+ +E KY  +++   +PA +
Sbjct: 210 YCSAVLLQKNIAGVEIGCGILGNDSLTVGACDAISLVDGFFDFEEKYQLISAKITVPAPL 269

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279
           P  I  +V+  A L + ++G +G++R DF F     +++  EIN  PG T  S +P M A
Sbjct: 270 PETIETKVKEQAQLLYHSLGLKGLARIDF-FVTDQGELYLNEINTMPGFTSHSRYPAMMA 328

Query: 280 YAGYSFRELL 289
             G S++ELL
Sbjct: 329 AVGLSYQELL 338


>gi|304396878|ref|ZP_07378758.1| D-alanine/D-alanine ligase [Pantoea sp. aB]
 gi|304355674|gb|EFM20041.1| D-alanine/D-alanine ligase [Pantoea sp. aB]
          Length = 365

 Score =  133 bits (335), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 101/348 (29%), Positives = 171/348 (49%), Gaps = 59/348 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS------------------V 42
           + ++ GG S+E EVSL S K    A++   F V  + +D+                    
Sbjct: 6   VGIVFGGKSAEHEVSLQSAKNILEAIDKTRFDVVLLGIDKQGHWRLNDASNFLLNAENPA 65

Query: 43  GLVLAHLKPDLA-------------------------FNVLHGNFGEDGLVQAILELLEI 77
            + L H   D+A                         F ++HG  GEDG +Q +L +  +
Sbjct: 66  LIALNHAAEDVALVPGKTQQQIITRHNAHPLSQIDVIFPIVHGTLGEDGSLQGLLRMASL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN---RFTMDSQHLISP---PYVIK 131
           P+  S +L SA+SMDK  +K+++   G+ V P + V    R  +D + +I+    P  IK
Sbjct: 126 PFVGSDVLGSAVSMDKDFTKRLLRDAGLNVAPWLSVTQAQRAHLDPEAVIARFGLPLFIK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT- 190
           P   GSS+G  V K D     D   + +++   ++LIEQ + G E+ C V+G+ + + + 
Sbjct: 186 PANQGSSVG--VSKVDSIEEFDAALALAFSFDRKVLIEQGIKGREIECAVLGNDAPEASP 243

Query: 191 --EIAVPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
             E+ V  + FYSY+ KY S N    V+PA I  +    ++ +A  A  A+ C G++R D
Sbjct: 244 CGEVVVHDA-FYSYDTKYISENGAQTVVPAAIAAETSDAIRDVAIKAFTALECFGMARVD 302

Query: 248 -FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            FL D  + ++   E+N  PG T +S++P++   AG S+R+L+  +++
Sbjct: 303 VFLTD--AGEIIVNEVNTLPGFTNISMYPKLWQAAGLSYRDLISRLID 348


>gi|327395333|dbj|BAK12755.1| D-alanine--D-alanine ligase A DdlA [Pantoea ananatis AJ13355]
          Length = 365

 Score =  133 bits (335), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 96/347 (27%), Positives = 169/347 (48%), Gaps = 57/347 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR--------SVGLVLAHLKP- 51
           + ++ GG SSE EVSL S K    A++   F+V  + +D+        +   +L    P 
Sbjct: 6   VGIVFGGKSSEHEVSLQSAKNIVDAIDKTRFEVVLLGIDKQGQWHLNDASNFLLNAENPS 65

Query: 52  ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
                                             D+ F V+HG  GEDG +Q +L +  +
Sbjct: 66  LIALNRTAKQVALIPGEPQNQIIDRMDAHPLSQLDVIFPVVHGTQGEDGSLQGLLRMASL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---DSQHLISP---PYVIK 131
           P+  S +L SA+SMDK  +K+++   G+ V P + V +  M   D + +I+    P  IK
Sbjct: 126 PFVGSDVLGSAVSMDKDVTKRLLRDAGLKVAPWLSVTQAQMNNLDIEAVIARFGLPLFIK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT- 190
           P   GSS+G+  +    +    L    ++   +++LIE+ + G E+ C V+G+   + + 
Sbjct: 186 PANQGSSVGVSKVTTAAAFRAAL--ELAFRFDNKVLIEKGIKGREIECAVLGNDYPEASP 243

Query: 191 --EIAVPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
             E+ V  + FYSY+ KY S    H V+PA IP  + + ++ +A  A  A+ C G++R D
Sbjct: 244 CGEVVVSDA-FYSYDTKYISETGAHTVIPADIPAAVDEAIREVALTAFTALSCFGLARVD 302

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             +     ++   E+N  PG T +S++P++   AG S+++L+  ++E
Sbjct: 303 VFYTE-DGEIIVNEVNTLPGFTNISMYPKLWQAAGLSYQDLITRLIE 348


>gi|166365192|ref|YP_001657465.1| D-alanyl-alanine synthetase A [Microcystis aeruginosa NIES-843]
 gi|190359167|sp|B0JHC1|DDL_MICAN RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|166087565|dbj|BAG02273.1| D-alanine--D-alanine ligase [Microcystis aeruginosa NIES-843]
          Length = 352

 Score =  133 bits (335), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 86/259 (33%), Positives = 136/259 (52%), Gaps = 20/259 (7%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           ++ F +LHG  GEDG +Q +L L+ + +  SG+L S L MDK+  K   ++ G+P     
Sbjct: 90  EVWFPILHGPNGEDGTLQGLLTLMRVAFVGSGVLGSCLGMDKIAMKTAFAAAGLPQVKYK 149

Query: 112 LVNRFTMDSQHLISP------------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
            + R  + S   + P            P  IKP   GSS+GI   +  Q +   L  ++S
Sbjct: 150 AITRSQVWSNPCVFPQLCDQIAEEIGYPCFIKPANLGSSVGISKARNRQELEAALDSAAS 209

Query: 160 WNHGDQLLIEQYVDGIELTCGVMGD----ASLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215
           ++   ++++E  V   E+ C V+G+    ASL V EI    SDFY YE KY+   S+ V+
Sbjct: 210 YDR--RIIVEAGVTAREIECAVLGNDNPQASL-VGEITF-DSDFYDYETKYTDGRSSMVI 265

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275
           PA IP  I  +V+ +A  A +A+   G+SR DF +   + +V   EIN  PG T  S++P
Sbjct: 266 PANIPDKIANQVREMAVEAFKAVDAAGLSRVDFFYVENTGEVLINEINTLPGFTNFSMYP 325

Query: 276 EMAAYAGYSFRELLLWMVE 294
           ++    G  F +L+  +V+
Sbjct: 326 QLWKATGLEFDKLVDKLVQ 344


>gi|324114603|gb|EGC08571.1| D-alanine-D-alanine ligase [Escherichia fergusonii B253]
          Length = 364

 Score =  133 bits (335), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 90/346 (26%), Positives = 163/346 (47%), Gaps = 55/346 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD--------------------- 39
           + ++ GG S+E EVSL S K    A++   F V  + +D                     
Sbjct: 6   VGIVFGGKSAEHEVSLQSAKNIVDAIDKNRFDVVLLGIDKQGQWHVSDAANYLLNADDPA 65

Query: 40  ----RSVGLVLAHL--------------KP----DLAFNVLHGNFGEDGLVQAILELLEI 77
               R     LA +              +P    D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  RIALRPSATSLAQVPGKHEQQLIDAQTAQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVIK 131
           P+  S +L SA  MDK  +K+++   G+ + P + + R    +      +  +  P  +K
Sbjct: 126 PFVGSDVLGSAACMDKDVTKRLLRDAGLNIAPFVTLTRANRSTITFAEIEAQLGLPLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  +  +      +  +  ++H  ++++E+ + G E+ C V+G+     + 
Sbjct: 186 PANQGSSVGVSKVTNEAEYKKAVDLAFEYDH--KVVVEKGIKGREIECAVLGNDHPQAST 243

Query: 192 IA--VPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               V  SDFY+Y+ KY   +    V+PA IP +I  +++ +A  A+Q +GC G++R D 
Sbjct: 244 CGEIVLNSDFYAYDTKYIDDDGAKVVVPAAIPAEINDKIREIAVKAYQTLGCAGMARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
              P    V   EIN  PG T +S++P++   +G S+ +L+  ++E
Sbjct: 304 FLTP-ENDVVINEINTLPGFTNISMYPKLWQASGLSYTDLITRLIE 348


>gi|161779870|gb|ABX79426.1| VanC2/3 [Enterococcus casseliflavus]
          Length = 350

 Score =  133 bits (335), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 82/250 (32%), Positives = 137/250 (54%), Gaps = 13/250 (5%)

Query: 49  LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
           L PD+ F ++HG +GEDG +Q + EL+++PY   G+  SAL M+K    Q  ++ GV   
Sbjct: 93  LVPDVLFPIMHGKYGEDGSIQGLFELMKLPYVGCGVAGSALCMNKWLLHQAAAAIGVQSA 152

Query: 109 PSILVNRFTMDSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN 161
           P+IL+     + Q  I         P   KP + GSS GI  +   + I   L    ++ 
Sbjct: 153 PTILLTN-QANQQEQIEAFIQTHGFPVFFKPNEAGSSKGITKVTCVEEIASAL--KEAFT 209

Query: 162 HGDQLLIEQYVDGIELTCGVMGDASLDVTEI-AVPKSD-FYSYELKYSSLNSTHVLPAKI 219
           +   +L+++ + G+E+ CG++G+ SL V    A+   D F+ +E KY  +++   +PA +
Sbjct: 210 YCSAVLLQKNIAGVEIGCGILGNDSLTVGACDAISLVDGFFDFEEKYQLISAKITVPAPL 269

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279
           P  I  +V+  A L ++++G +G++R DF F     +++  EIN  PG T  S +P M A
Sbjct: 270 PETIETKVKEQAQLLYRSLGLKGLARIDF-FVTDQGELYLNEINTMPGFTSHSRYPAMMA 328

Query: 280 YAGYSFRELL 289
             G S++ELL
Sbjct: 329 AVGLSYQELL 338


>gi|332877310|ref|ZP_08445058.1| D-ala D-ala ligase protein [Capnocytophaga sp. oral taxon 329 str.
           F0087]
 gi|332684693|gb|EGJ57542.1| D-ala D-ala ligase protein [Capnocytophaga sp. oral taxon 329 str.
           F0087]
          Length = 335

 Score =  133 bits (335), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 88/335 (26%), Positives = 164/335 (48%), Gaps = 47/335 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKV-----------------SQIDVDRSVG 43
           +A++ GG SSE +VSL S +   S L+   ++V                 S+ +VDR+  
Sbjct: 5   IAIVAGGDSSEHDVSLRSAEGIHSFLDKERYEVYIIEIKGMTWEAHLKDGSRSNVDRNDF 64

Query: 44  LVL---AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
             +     ++PD A+  +HG  GE+G++Q   +L+ +PY+ S +L  A++ +K    Q +
Sbjct: 65  SFMEGGKRIRPDFAYITIHGTPGENGILQGYFDLIHLPYSTSDVLVEAMTFNKFTLNQYL 124

Query: 101 SSCGVPVCPSILVNRFTMDSQHLISP---------PYVIKPLKGGSSLGIIVIKKDQSIP 151
              GV V  S++V +     +HLI+          P  +KP  GGSS G+  +K    I 
Sbjct: 125 KGFGVSVSESLIVRK---GFEHLITDDEIIEKIGLPCFVKPNAGGSSFGVTKVKSADQIH 181

Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV----TEIAVPKSDFYSYELKYS 207
             +L+  +    D++++E +++G E++ G       +V    TE+ V  ++F+ Y  KY+
Sbjct: 182 EAILK--AMRESDEVMVEAFMEGTEISQGCYKTQEKEVVLPATEV-VSDNEFFDYNAKYN 238

Query: 208 SLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS-------RKVFWL 260
                 + PA++  +  + V  +  + +  +GC GI R D++    +        ++  L
Sbjct: 239 G-QVREITPARLKEETAERVSLITSMIYDILGCNGIIRVDYIITHTTDENGKERERINML 297

Query: 261 EINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           E+N  PGMT  S  P+    AG   +++L  ++E+
Sbjct: 298 EVNTTPGMTATSFIPQQVRAAGMDMKDVLTDIIEN 332


>gi|330862508|emb|CBX72665.1| D-alanine--D-alanine ligase A [Yersinia enterocolitica W22703]
          Length = 301

 Score =  133 bits (335), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 81/258 (31%), Positives = 140/258 (54%), Gaps = 24/258 (9%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+ F ++HG  GEDG +Q +L +  IP+  SG+L SA+SMDK  +K+++   G+ + P I
Sbjct: 35  DVIFPIVHGTLGEDGSLQGLLRMANIPFVGSGVLGSAVSMDKDITKRLLRDAGLNIAPFI 94

Query: 112 LVNRFTMDSQHL------ISPPYVIKPLKGGSSLGIIVIKK----DQSIPLDLLQSSSWN 161
            + R   D+         +  P  IKP   GSS+G+  ++     +Q++ L      +++
Sbjct: 95  TLTRANKDNYRFEQVTAKLGLPLFIKPANQGSSVGVSKVRNAYEYEQAVAL------AFD 148

Query: 162 HGDQLLIEQYVDGIELTCGVMGD----ASLDVTEIAVPKSDFYSYELKY-SSLNSTHVLP 216
              ++L+E  + G E+ C VMG+    ASL   E+ +   +FYSY+ KY +   +  ++P
Sbjct: 149 FDHKVLVESAIVGREIECAVMGNDNPQASL-CGEVVI-SDEFYSYDTKYINETGAKVIIP 206

Query: 217 AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPE 276
           A I   +   ++ +A  A +A+ CRG++R D    P +R V   EIN  PG T +S++P+
Sbjct: 207 ASIGSAVSDNIRAVALAAFRALECRGMARVDVFLTPDNR-VIINEINTLPGFTNISMYPK 265

Query: 277 MAAYAGYSFRELLLWMVE 294
           +    G    EL+  ++E
Sbjct: 266 LWRATGVGSTELITTLIE 283


>gi|283784195|ref|YP_003364060.1| D-alanine:D-alanine ligase A [Citrobacter rodentium ICC168]
 gi|282947649|emb|CBG87204.1| D-alanine:D-alanine ligase A [Citrobacter rodentium ICC168]
          Length = 364

 Score =  133 bits (335), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 95/346 (27%), Positives = 169/346 (48%), Gaps = 55/346 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR--------SVGLVL-----A 47
           + ++ GG S+E EVSL S K    A++   F+V  + +D+        +   +L     A
Sbjct: 6   VGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFEVVLLGIDKQGQWHVSDAANYLLNADDPA 65

Query: 48  H--LKP----------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
           H  L+P                            D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  HIALRPSATRLAQVPGQHEHQLIDARTATPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFTM---DSQHLISPPYVIK 131
           P+  S +L SA  MDK  +K+++   G+ + P + +   NR T    D +  +  P  +K
Sbjct: 126 PFVGSDVLGSAACMDKDVTKRLLRDTGLNIAPFVTLSRANRHTFSFADIKARLGLPLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  +  +      +  +  ++H  ++++EQ + G E+ C V+G+     + 
Sbjct: 186 PANQGSSVGVSKVTNEAQYAQAVALAFEFDH--KVVVEQGIVGREIECAVLGNDRPQAST 243

Query: 192 IA--VPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               V  SDFY+Y+ KY   N    V+PA I   I  +++ +A  A+Q +GC G++R D 
Sbjct: 244 CGEIVLNSDFYAYDTKYIDDNGAKVVVPATIDPQINDKIRDIAIQAYQTLGCAGMARVD- 302

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           +F     +V   EIN  PG T +S++P++   +G S+ +L+  ++E
Sbjct: 303 VFLTAENEVVINEINTLPGFTNISMYPKLWQASGLSYTDLISRLIE 348


>gi|206580748|ref|YP_002240164.1| D-alanine--D-alanine ligase A [Klebsiella pneumoniae 342]
 gi|206569806|gb|ACI11582.1| D-alanine--D-alanine ligase A [Klebsiella pneumoniae 342]
          Length = 365

 Score =  133 bits (334), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 92/346 (26%), Positives = 166/346 (47%), Gaps = 55/346 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD--------------------- 39
           + ++ GG S+E EVSL S K    A++ + F V  + +D                     
Sbjct: 6   VGIVFGGKSAEHEVSLQSAKNIVEAIDKSRFDVVLLGIDKQGLWHINDAGNYLLNAQDPA 65

Query: 40  ----RSVGLVLAHL--------------KP----DLAFNVLHGNFGEDGLVQAILELLEI 77
               R   + LA +              +P    D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  RIALRPSTVTLAQIPGREAQQLINADSGQPLAAIDVIFPIVHGTLGEDGSLQGMLRMANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLISPPYVIK 131
           P+  S +L SA  MDK  +K+++   G+ V P I + R         D +  +  P  +K
Sbjct: 126 PFVGSDVLGSAACMDKDVTKRLLRDAGLAVAPFITLTRANRAQFSFADVEAKLGLPLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  +K ++     +  +  ++H  ++++EQ + G E+ C V+G+     + 
Sbjct: 186 PANQGSSVGVSKVKNEEQYHQAVALAFEFDH--KVVVEQGIKGREIECAVLGNDHPQAST 243

Query: 192 IA--VPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               V  S+FY+Y+ KY     +  V+PA I  +I  +++ +A  A+Q +GC G++R D 
Sbjct: 244 CGEIVLNSEFYAYDTKYIDDQGAQVVVPAAIAPEINDKIRAIAVQAYQTLGCSGMARVD- 302

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           +F     +V   EIN  PG T +S++P++   +G  +  L+  ++E
Sbjct: 303 VFLTADNEVVINEINTLPGFTNISMYPKLWQASGLDYTSLITRLIE 348


>gi|171778654|ref|ZP_02919750.1| hypothetical protein STRINF_00602 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171282611|gb|EDT48035.1| hypothetical protein STRINF_00602 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 348

 Score =  133 bits (334), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 100/333 (30%), Positives = 161/333 (48%), Gaps = 43/333 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           + +L GG S+EREVS+ S ++   A+    F V    + +S   +               
Sbjct: 6   LVLLYGGRSAEREVSVLSAESVMRAINYDKFFVKTYFITKSGDFIKTQEFFSKPADDEKL 65

Query: 49  -----------LKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
                      +KP        + F VLHG  GEDG VQ  LE+L++PY  + IL+S+++
Sbjct: 66  MTNDTVVESQKIKPSDIYEPGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGTNILSSSVA 125

Query: 91  MDKMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
           MDK+ +K V+ S GVP+ P +       ++    +    ++ P  +KP   GSS+GI   
Sbjct: 126 MDKISTKHVLESAGVPLVPYVTYVEGSDLDAAVAEVNDKLTYPVFVKPANMGSSVGI--S 183

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYS 201
           K +    L      +  +  ++LIE  V+  E+  G++G+A +  T   E+ V    FY 
Sbjct: 184 KAEDEAALRSAIDFALKYDSRILIETGVNAREIEVGILGNADVKTTLPGEV-VKDVAFYD 242

Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
           Y+ KY     T  +PA I  DI +E++  A  A +AIG  G+SR DF        V+  E
Sbjct: 243 YDAKYIDNKITMDIPAHIDSDIMEEMRGYATTAFRAIGGCGLSRCDFFLTE-DGHVYLNE 301

Query: 262 INVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           +N  PG T  S++P +    G ++ +L+  +VE
Sbjct: 302 LNTMPGFTQWSMYPLLWENMGLAYSDLIEKLVE 334


>gi|168465461|ref|ZP_02699343.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|195631722|gb|EDX50242.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
          Length = 364

 Score =  133 bits (334), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 90/346 (26%), Positives = 167/346 (48%), Gaps = 55/346 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD--------------------- 39
           + ++ GG S+E EVSL S K    A++   F V  + +D                     
Sbjct: 6   VGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGIDKAGQWHVNDAENYLQNADDPA 65

Query: 40  ----RSVGLVLAHL--------------KP----DLAFNVLHGNFGEDGLVQAILELLEI 77
               R   + LA +              +P    D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  HIALRPSAISLAQVPGKHQHQLINAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVIK 131
           P+  S +L+SA  MDK  +K+++   G+ + P I + R    +      +  +  P  +K
Sbjct: 126 PFVGSDVLSSAACMDKDVAKRLLRDAGLNIAPFITLTRTNRHAFSFAEVESRLGLPLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  +  +      +  +  ++H  ++++EQ + G E+ C V+G+ +   + 
Sbjct: 186 PANQGSSVGVSKVANEAQYQQAVALAFEFDH--KVVVEQGIKGREIECAVLGNDNPQAST 243

Query: 192 IA--VPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               V  S+FY+Y+ KY   N    V+PA+IP  +  +++ +A  A+Q +GC G++R D 
Sbjct: 244 CGEIVLNSEFYAYDTKYIDDNGAQVVVPAQIPSGVNDKIRAIAIQAYQTLGCAGMARVD- 302

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           +F     +V   EIN  PG T +S++P++   +G  + +L+  ++E
Sbjct: 303 VFLTADNEVVINEINTLPGFTNISMYPKLWQASGLGYTDLISRLIE 348


>gi|238893305|ref|YP_002918039.1| D-alanylalanine synthetase [Klebsiella pneumoniae NTUH-K2044]
 gi|238545621|dbj|BAH61972.1| D-alanylalanine synthetase [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
          Length = 365

 Score =  133 bits (334), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 92/346 (26%), Positives = 166/346 (47%), Gaps = 55/346 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD--------------------- 39
           + ++ GG S+E EVSL S K    A++ + F V  + +D                     
Sbjct: 6   VGIVFGGKSAEHEVSLQSAKNIVEAIDKSRFDVVLLGIDKQGLWHINDAGNYLLNAQDPA 65

Query: 40  ----RSVGLVLAHL--------------KP----DLAFNVLHGNFGEDGLVQAILELLEI 77
               R   + LA +              +P    D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  RIALRPSTVTLAQIPGREAQQLINAESGQPLAAIDVIFPIVHGTLGEDGSLQGMLRMANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLISPPYVIK 131
           P+  S +L SA  MDK  +K+++   G+ V P I + R         D +  +  P  +K
Sbjct: 126 PFVGSDVLGSAACMDKDVTKRLLRDAGLAVAPFITLTRANRAQFSFADVEAKLGLPLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  +K ++     +  +  ++H  ++++EQ + G E+ C V+G+     + 
Sbjct: 186 PANQGSSVGVSKVKNEEQYHQAVALAFEFDH--KVVVEQGIKGREIECAVLGNDHPQAST 243

Query: 192 IA--VPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               V  S+FY+Y+ KY     +  V+PA I  +I  +++ +A  A+Q +GC G++R D 
Sbjct: 244 CGEIVLNSEFYAYDTKYIDDQGAQVVVPAAIAPEINDKIRAIAVQAYQTLGCSGMARVD- 302

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           +F     +V   EIN  PG T +S++P++   +G  +  L+  ++E
Sbjct: 303 VFLTADNEVVINEINTLPGFTNISMYPKLWQASGLDYTSLITRLIE 348


>gi|297172655|gb|ADI23623.1| D-alanine-D-alanine ligase and related ATP-grasp enzymes
           [uncultured gamma proteobacterium HF4000_06A21]
          Length = 359

 Score =  133 bits (334), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 95/345 (27%), Positives = 170/345 (49%), Gaps = 53/345 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLA------------- 47
           M +L GG S+E EVS+ S ++  +A++   ++   + + R    +LA             
Sbjct: 1   MLLLFGGQSAEHEVSVISARSVYAAIDRQRYEPILVGITRQGSWLLAGSDASILEHDTVD 60

Query: 48  -------------------HLKP-------DLAFNVLHGNFGEDGLVQAILELLEIPYTH 81
                              +  P       D+ F +LHG FGEDG +Q +LEL+ + Y  
Sbjct: 61  DMSLPVVYLASAGQELKVSNASPHDQGVSVDVVFPLLHGPFGEDGTIQGLLELVGMAYVG 120

Query: 82  SGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTMDSQHLI-------SPPYVIKP 132
           +G+ AS++ MDK  +K + ++ G+      ++  NR+  D++ ++         P  +KP
Sbjct: 121 AGVAASSVGMDKALAKLIFNASGLSQTAYQVIGRNRWHADAETVVFNIEKHLQYPLFVKP 180

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTE 191
              GSS+G+   K   S+   L  ++ ++   ++L+E+ V D  E+ C V+G+ S   + 
Sbjct: 181 ANMGSSVGVSKAKDAASLTKALDIAAQYDV--KMLVEESVEDCHEVECAVLGNDSPRASI 238

Query: 192 IA--VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
           I   +P +DFY Y+ KY    S  ++PA +   +   VQ +A  A Q+I C G++R DF 
Sbjct: 239 IGEIIPGADFYDYQTKYLDDRSELIVPANLSSSVSNMVQGMAIKAFQSIDCTGLARVDFF 298

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
                  +F  EIN  PG TP+S++P +   +G ++ EL+  +++
Sbjct: 299 VRRADDFIFINEINTMPGFTPISMYPILWQASGLTYPELIDQLIQ 343


>gi|319937485|ref|ZP_08011890.1| VanG2 [Coprobacillus sp. 29_1]
 gi|319807325|gb|EFW03934.1| VanG2 [Coprobacillus sp. 29_1]
          Length = 353

 Score =  133 bits (334), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 87/262 (33%), Positives = 140/262 (53%), Gaps = 20/262 (7%)

Query: 44  LVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103
            +L H+  D  F +LHG  GEDG VQ ++ L  IP     + +SAL MDK R+ Q+V+  
Sbjct: 90  FILVHI--DAIFPILHGKNGEDGTVQGLIALSGIPLIGCSVASSALCMDKERAHQIVNHA 147

Query: 104 GVPVCPSILVNR---FTMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS 158
           G+ V  S ++     + +   +   +S P  +KP+K GSS GI  +       LD ++ +
Sbjct: 148 GIRVPKSFVLTSMQDYQLQKNNFLKLSLPLFVKPVKAGSSYGITKVTH-----LDEIEKA 202

Query: 159 ---SWNHGDQLLIEQYVDGIELTCGVMGDASL---DVTEIAVPKSDFYSYELKYSSLNST 212
              ++ + +++LIE+ ++G E+ C VMG   L    V EI + +  F+ +  KY+  +S 
Sbjct: 203 IEFAFTYDNEILIEENIEGFEVGCAVMGTDQLILGRVDEIELSQG-FFDFTEKYTLKSSQ 261

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
             +PA+I   I K +Q  A + ++A+GC+  +R D    P +  VF  E+N  PG T  S
Sbjct: 262 IHMPARIDSQIEKRIQETAQMIYKALGCQVFARVDMFLTPENEIVF-NEVNTIPGFTSHS 320

Query: 273 IFPEMAAYAGYSFRELLLWMVE 294
            FP M    GYSF  +L  ++E
Sbjct: 321 RFPSMLQGIGYSFENILDKLIE 342


>gi|290510033|ref|ZP_06549403.1| D-alanine-D-alanine ligase [Klebsiella sp. 1_1_55]
 gi|289776749|gb|EFD84747.1| D-alanine-D-alanine ligase [Klebsiella sp. 1_1_55]
          Length = 369

 Score =  133 bits (334), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 92/346 (26%), Positives = 166/346 (47%), Gaps = 55/346 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD--------------------- 39
           + ++ GG S+E EVSL S K    A++ + F V  + +D                     
Sbjct: 10  VGIVFGGKSAEHEVSLQSAKNIVEAIDKSRFDVVLLGIDKQGLWHINDAGNYLLNAQDPA 69

Query: 40  ----RSVGLVLAHL--------------KP----DLAFNVLHGNFGEDGLVQAILELLEI 77
               R   + LA +              +P    D+ F ++HG  GEDG +Q +L +  +
Sbjct: 70  RIALRPSTVTLAQIPGREAQQLINADSGQPLAAIDVIFPIVHGTLGEDGSLQGMLRMANL 129

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLISPPYVIK 131
           P+  S +L SA  MDK  +K+++   G+ V P I + R         D +  +  P  +K
Sbjct: 130 PFVGSDVLGSAACMDKDVTKRLLRDAGLAVAPFITLTRANRAQFSFADVEAKLGLPLFVK 189

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  +K ++     +  +  ++H  ++++EQ + G E+ C V+G+     + 
Sbjct: 190 PANQGSSVGVSKVKNEEQYHQAVALAFEFDH--KVVVEQGIKGREIECAVLGNDHPQAST 247

Query: 192 IA--VPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               V  S+FY+Y+ KY     +  V+PA I  +I  +++ +A  A+Q +GC G++R D 
Sbjct: 248 CGEIVLNSEFYAYDTKYIDDQGAQVVVPAAIAPEINDKIRAIAVQAYQTLGCSGMARVD- 306

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           +F     +V   EIN  PG T +S++P++   +G  +  L+  ++E
Sbjct: 307 VFLTAENEVVINEINTLPGFTNISMYPKLWQASGLDYTSLITRLIE 352


>gi|315037378|ref|YP_004030946.1| D-alanyl-alanine synthetase A [Lactobacillus amylovorus GRL 1112]
 gi|325955848|ref|YP_004286458.1| D-alanyl-alanine synthetase A [Lactobacillus acidophilus 30SC]
 gi|312275511|gb|ADQ58151.1| D-alanyl-alanine synthetase A [Lactobacillus amylovorus GRL 1112]
 gi|325332413|gb|ADZ06321.1| D-alanyl-alanine synthetase A [Lactobacillus acidophilus 30SC]
 gi|327182683|gb|AEA31130.1| D-alanyl-alanine synthetase A [Lactobacillus amylovorus GRL 1118]
          Length = 360

 Score =  133 bits (334), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 98/341 (28%), Positives = 159/341 (46%), Gaps = 51/341 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-----------------DRSVG 43
           + ++ GG SSE EVS+ SG     A++   F V  I +                 D S  
Sbjct: 7   VGLIFGGNSSEYEVSIVSGHNIYKAIDKDKFDVHPIWITNEGYFANEEESFKVLEDPSYQ 66

Query: 44  LVLAHL--------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
           +   H               + D+ F ++HGN GEDG++Q +  L+  P+    +LA+A+
Sbjct: 67  VKNPHKVHNISNLIELENLPEIDVFFPIVHGNLGEDGVLQGLFRLMNKPFVGDDVLAAAV 126

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPY-----------VIKPLKGGSS 138
           +MDK  +K +    GVPV   I + RF  D ++     Y            +KP   GSS
Sbjct: 127 TMDKEFTKILAQKVGVPVADWISIKRFEYDDKNNDKLDYEKVAEKLGRDMFVKPSNQGSS 186

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS---LDVTEIAVP 195
           +G+  +         L    ++ + D++L+E+ V G E+   V+G+       V +I   
Sbjct: 187 VGVNHVTNADEYAAAL--EEAFKYDDKVLVEETVPGTEVETAVLGNDKPIVAGVGQITNA 244

Query: 196 KSDFYSYELKYSSLNSTHVL--PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
           K  FY+YE KY   NST  L  PA +P +I   V++ A   ++   C G++R D +  P 
Sbjct: 245 KGSFYTYENKYDD-NSTSKLQIPADLPDEIIDTVRKNARKVYEVTECSGMARIDSMLTP- 302

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             KV   E+N  PG T +S++P++   AG  + EL+  ++E
Sbjct: 303 GGKVVLTEVNALPGFTNISMYPKLFEEAGIPYTELITRLIE 343


>gi|295691990|ref|YP_003600600.1| D-alanine--D-alanine ligase [Lactobacillus crispatus ST1]
 gi|295030096|emb|CBL49575.1| D-alanine--D-alanine ligase [Lactobacillus crispatus ST1]
          Length = 360

 Score =  133 bits (334), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 98/341 (28%), Positives = 157/341 (46%), Gaps = 51/341 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI------------------------ 36
           + ++ GG SSE EVS+ SG     A++   F V  I                        
Sbjct: 7   VGLIFGGNSSEYEVSIVSGHNIYKAIDKDKFDVHPIWITNEGYFANEEESFKVLDDPSYQ 66

Query: 37  -----DVDRSVGLVLAHLKP--DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
                 V+    L+     P  D+ F ++HGN GEDG++Q +  L++ P+    +L +A+
Sbjct: 67  VKNPHKVNNISNLIELENLPEIDVFFPIVHGNLGEDGVLQGLFRLMDKPFVGDDVLGAAV 126

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPY-----------VIKPLKGGSS 138
           +MDK  +K +    GVPV   I + RF  D +      Y            +KP   GSS
Sbjct: 127 TMDKEFTKILAQRVGVPVADWISIKRFEYDDKKNAKLNYEKVAEKLGRDMFVKPSNQGSS 186

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS---LDVTEIAVP 195
           +G+  +         L +  ++ + D++L+E+ V G E+   V+G+       V +I   
Sbjct: 187 VGVSHVTNADEYTAALKE--AFKYDDKVLVEKTVPGTEVETAVLGNDKPIVAGVGQITNA 244

Query: 196 KSDFYSYELKYSSLNSTHVL--PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
           K  FY+YE KY   NST  L  PA +P +I   V+  A   + A  C G++R D +  P 
Sbjct: 245 KGSFYTYENKYDD-NSTSKLQIPADLPQEIIDTVRENARKVYAATECSGMARIDSMLTP- 302

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             KV   E+N  PG T +S++P++   AG  + EL+  ++E
Sbjct: 303 GGKVVLTEVNALPGFTNISMYPKLFEEAGVPYSELITRLIE 343


>gi|269140712|ref|YP_003297413.1| D-alanylalanine synthetase [Edwardsiella tarda EIB202]
 gi|267986373|gb|ACY86202.1| D-alanylalanine synthetase [Edwardsiella tarda EIB202]
          Length = 390

 Score =  133 bits (334), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 95/346 (27%), Positives = 165/346 (47%), Gaps = 55/346 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS------------------V 42
           + ++ GG S E EVSL S K    A++ + F V+ I +D+                    
Sbjct: 29  VGIVFGGQSCEHEVSLQSAKNIVEAIDQSRFDVTLIGIDKQGYWHLCGGQDYLNHAQDPQ 88

Query: 43  GLVLAHLKPDLA-------------------------FNVLHGNFGEDGLVQAILELLEI 77
            + L H +  LA                         F ++HG  GEDG +Q +L++L +
Sbjct: 89  HIALNHSERRLAVIPGATQGQLIDSASGEPLPSLDVIFPIVHGTQGEDGCLQGMLKMLNL 148

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---DSQHL---ISPPYVIK 131
           P+  S ++ SA  MDK   K+++   G+P+ P + + R T    D + L   +     +K
Sbjct: 149 PFVGSDVIGSAACMDKEVCKRLLRDAGLPITPFVTLTRATQANYDYETLRSQLGETLFVK 208

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD--ASLDV 189
           P   GSS+G+  ++        +  +  ++H  ++++E+ V G E+ C ++G+  A   V
Sbjct: 209 PANQGSSVGVSKVRNADEYHRAIADALRFDH--KVIVERGVVGREIECAILGNEAAQASV 266

Query: 190 TEIAVPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               V  SDFYSY+ KY S      V+PA +  +  + V+  A  A QA+ CRG++R D 
Sbjct: 267 CGEIVLHSDFYSYDSKYISAQGAQVVVPAAMAPEASERVRHTALRAFQALECRGLARVD- 325

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           +F     +V   EIN  PG T +S++P++   +G  ++ L+  ++E
Sbjct: 326 VFLTEDNEVIINEINTLPGFTNISMYPKLWQASGIGYQALITRLIE 371


>gi|317049667|ref|YP_004117315.1| D-alanine/D-alanine ligase [Pantoea sp. At-9b]
 gi|316951284|gb|ADU70759.1| D-alanine/D-alanine ligase [Pantoea sp. At-9b]
          Length = 364

 Score =  133 bits (334), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 99/349 (28%), Positives = 172/349 (49%), Gaps = 61/349 (17%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR--------SVGLVLAHLKP- 51
           + ++ GG S+E EVSL S K    A++ + F V  + +D+        + G +L    P 
Sbjct: 6   VGIIFGGKSAEHEVSLQSAKNILEAIDTSKFDVVLLGIDKQGEWHLNDASGFLLNAENPS 65

Query: 52  ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
                                             D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  LIALNRSGENVALVPGQASQQLITRQNAHPLSQVDVIFPIVHGTLGEDGSLQGLLRMANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN---RFTMDSQHLISP---PYVIK 131
           P+  SG+L SA+SMDK  +K+++   G+ V P I V    R  +D+Q +++    P  IK
Sbjct: 126 PFVGSGVLGSAVSMDKDFTKRLLRDAGLKVAPWISVTQAQRARLDAQAVVAQLGLPLFIK 185

Query: 132 PLKGGSSLGIIVIK--KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD---AS 186
           P   GSS+G+  +   ++ +  LDL    ++    ++LIEQ + G E+ C V+G+    +
Sbjct: 186 PANQGSSVGVSKVSCIEEFAAALDL----AFTFDRKVLIEQGIKGREIECAVLGNDEPVA 241

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
               E+ V  + FYSY+ KY + +    V+PA I     + ++ +A  A QA+ C G++R
Sbjct: 242 SPCGEVVVHDA-FYSYDTKYINESGAQVVVPAAISTADSEAIRAVALQAFQALECSGMAR 300

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            D +F     ++   E+N  PG T +S++P++   AG S+  L+  ++E
Sbjct: 301 VD-VFLTEDGEIIVNEVNTLPGFTNISMYPKLWQAAGLSYSALITRLIE 348


>gi|123966700|ref|YP_001011781.1| D-alanyl-alanine synthetase A [Prochlorococcus marinus str. MIT
           9515]
 gi|166198500|sp|A2BY13|DDL_PROM5 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|123201066|gb|ABM72674.1| D-alanine--D-alanine ligase [Prochlorococcus marinus str. MIT 9515]
          Length = 355

 Score =  133 bits (334), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 96/345 (27%), Positives = 165/345 (47%), Gaps = 54/345 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASAL---------------------------------E 27
           + ++ GG S+E  VS+SS K    AL                                 E
Sbjct: 9   IGIIFGGTSNEHYVSISSAKTVFKALISRTNKELFRIKAFYINKHGVWIDSDLSLEILRE 68

Query: 28  DAG---FKVSQIDVDRSVGLV--LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
           ++G   F+  Q   +R +  +  L     D+ F +LHG  GEDG +  +L+  + P    
Sbjct: 69  NSGNNIFEKYQELPNRKINFLNNLEFQNIDIWFPLLHGCNGEDGAIHGLLKFTQKPLIGC 128

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL-----------ISPPYVIK 131
           GI  SA+ MDK+  KQ+ S+  +P    + +  + +   ++           ++ P  +K
Sbjct: 129 GISGSAIGMDKILMKQIFSNLSIPQVNFLAIQNYDLSDDNVKDNLSVEIIEKLNLPVFVK 188

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSSLGI   K    I +  LQ + W    +++IE+ ++  EL CG++G+  L  ++
Sbjct: 189 PANSGSSLGISKAKNKSEI-IKALQKA-WEIDSRIVIEEGLNVRELECGIIGNLKLSTSK 246

Query: 192 IA--VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
           I      SD+Y Y+ KYS+ N   ++PA I   I ++++ LA  + +A+   G +R DF 
Sbjct: 247 IGEVSYSSDWYDYDSKYSTDNKI-IIPADIDSQISEQIKDLAIRSCRALNIYGFARVDFF 305

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            + +SRK+F  EIN  PG T  S+FP +   +G +  +L+  +++
Sbjct: 306 LEKISRKIFLNEINTIPGFTSKSMFPMLWKASGLNIDQLVAKLID 350


>gi|330995871|ref|ZP_08319767.1| D-ala D-ala ligase protein [Paraprevotella xylaniphila YIT 11841]
 gi|329574402|gb|EGG55973.1| D-ala D-ala ligase protein [Paraprevotella xylaniphila YIT 11841]
          Length = 335

 Score =  133 bits (334), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 87/335 (25%), Positives = 165/335 (49%), Gaps = 47/335 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKV-----------------SQIDVDRSVG 43
           +A++ GG SSE +VSL S +   S L+   ++V                 S+ +VDR+  
Sbjct: 5   IAIVAGGDSSEHDVSLRSAEGIYSFLDKERYEVYIIEIKGMAWEAHLKDGSRSNVDRNDF 64

Query: 44  LVL---AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
             +     ++PD A+  +HG  GE+G++Q   +L+ +PY+ S +L  A++ +K    Q +
Sbjct: 65  SFMEGGKRIRPDFAYITIHGTPGENGILQGYFDLIHLPYSTSDVLVEAMTFNKFTLNQYL 124

Query: 101 SSCGVPVCPSILVNRFTMDSQHLISP---------PYVIKPLKGGSSLGIIVIKKDQSIP 151
              GV V  S++V +     +HL++          P  +KP  GGSS G+  +K    I 
Sbjct: 125 KGFGVSVSESLIVRK---GFEHLVTDDEIIEKIGLPCFVKPNAGGSSFGVTKVKSADQIH 181

Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV----TEIAVPKSDFYSYELKYS 207
             +L+  + +  D++++E +++G E++ G       +V    TE+ V  ++F+ Y  KY+
Sbjct: 182 EAILK--AMHESDEVMVEAFMEGTEISQGCYKTQEKEVVLPATEV-VSDNEFFDYNAKYN 238

Query: 208 SLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS-------RKVFWL 260
                 + PA++  +  + V  +  + +  +GC GI R D++    +        ++  L
Sbjct: 239 G-QVREITPARLKEETAERVSLITSMIYDILGCNGIIRVDYIITHTTDENGKEKERINML 297

Query: 261 EINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           E+N  PGMT  S  P+    AG   +++L  ++E+
Sbjct: 298 EVNTTPGMTATSFIPQQVRAAGMDMKDVLTDIIEN 332


>gi|152968896|ref|YP_001334005.1| D-alanylalanine synthetase [Klebsiella pneumoniae subsp. pneumoniae
           MGH 78578]
 gi|262042385|ref|ZP_06015547.1| D-alanine-D-alanine ligase A [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|330006858|ref|ZP_08305734.1| D-ala D-ala ligase protein [Klebsiella sp. MS 92-3]
 gi|150953745|gb|ABR75775.1| D-alanylalanine synthetase [Klebsiella pneumoniae subsp. pneumoniae
           MGH 78578]
 gi|259040293|gb|EEW41402.1| D-alanine-D-alanine ligase A [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|328535701|gb|EGF62146.1| D-ala D-ala ligase protein [Klebsiella sp. MS 92-3]
          Length = 376

 Score =  133 bits (334), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 92/346 (26%), Positives = 166/346 (47%), Gaps = 55/346 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD--------------------- 39
           + ++ GG S+E EVSL S K    A++ + F V  + +D                     
Sbjct: 17  VGIVFGGKSAEHEVSLQSAKNIVEAIDKSRFDVVLLGIDKQGLWHINDAGNYLLNAQDPA 76

Query: 40  ----RSVGLVLAHL--------------KP----DLAFNVLHGNFGEDGLVQAILELLEI 77
               R   + LA +              +P    D+ F ++HG  GEDG +Q +L +  +
Sbjct: 77  RIALRPSTVTLAQIPGREAQQLINAESGQPLAAIDVIFPIVHGTLGEDGSLQGMLRMANL 136

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLISPPYVIK 131
           P+  S +L SA  MDK  +K+++   G+ V P I + R         D +  +  P  +K
Sbjct: 137 PFVGSDVLGSAACMDKDVTKRLLRDAGLAVAPFITLTRANRAQFSFADVEAKLGLPLFVK 196

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  +K ++     +  +  ++H  ++++EQ + G E+ C V+G+     + 
Sbjct: 197 PANQGSSVGVSKVKNEEQYHQAVALAFEFDH--KVVVEQGIKGREIECAVLGNDHPQAST 254

Query: 192 IA--VPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               V  S+FY+Y+ KY     +  V+PA I  +I  +++ +A  A+Q +GC G++R D 
Sbjct: 255 CGEIVLNSEFYAYDTKYIDDQGAQVVVPAAIAPEINDKIRAIAVQAYQTLGCSGMARVD- 313

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           +F     +V   EIN  PG T +S++P++   +G  +  L+  ++E
Sbjct: 314 VFLTADNEVVINEINTLPGFTNISMYPKLWQASGLDYTSLITRLIE 359


>gi|161779883|gb|ABX79434.1| VanC2/3 [Enterococcus casseliflavus]
          Length = 350

 Score =  133 bits (334), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 82/250 (32%), Positives = 137/250 (54%), Gaps = 13/250 (5%)

Query: 49  LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
           L PD+ F ++HG +GEDG +Q + EL+++PY   G+  SAL M+K    Q  ++ GV   
Sbjct: 93  LVPDVLFPIMHGKYGEDGSIQGLFELMKLPYVGCGVAGSALCMNKWLLHQAAAAIGVQSA 152

Query: 109 PSILVNRFTMDSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN 161
           P+IL+     + Q  I         P   KP + GSS GI  +   + I   L    ++ 
Sbjct: 153 PTILLTN-QANQQEQIEAFIQTHGFPVFFKPNEAGSSKGITKVTCVEEIASAL--KEAFT 209

Query: 162 HGDQLLIEQYVDGIELTCGVMGDASLDVTEI-AVPKSD-FYSYELKYSSLNSTHVLPAKI 219
           +   +L+++ + G+E+ CG++G+ SL V    A+   D F+ +E KY  +++   +PA +
Sbjct: 210 YCSAVLLQKNIVGVEIGCGILGNDSLTVGACDAISLVDGFFDFEEKYQLISAKITVPAPL 269

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279
           P  I  +V+  A L ++++G +G++R DF F     +++  EIN  PG T  S +P M A
Sbjct: 270 PETIETKVKEQAQLLYRSLGLKGLARIDF-FVTDQGELYLNEINTMPGFTSHSRYPAMMA 328

Query: 280 YAGYSFRELL 289
             G S++ELL
Sbjct: 329 AVGLSYQELL 338


>gi|315925513|ref|ZP_07921723.1| D-alanine-D-alanine ligase [Pseudoramibacter alactolyticus ATCC
           23263]
 gi|315621054|gb|EFV01025.1| D-alanine-D-alanine ligase [Pseudoramibacter alactolyticus ATCC
           23263]
          Length = 353

 Score =  133 bits (334), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 91/339 (26%), Positives = 156/339 (46%), Gaps = 44/339 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           + V+ GG S E EV+  S      A++   + V+ I + +    ++              
Sbjct: 7   LGVVFGGQSGEHEVARVSAYNVLQAVDRTKYDVTTIGITKDGRWLIYTGDWDKLPDGSWQ 66

Query: 47  ---AHLKPDLA-------------FNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
               HL+ D +             F ++HG  GEDG +Q + E++  PY   G+LASA+ 
Sbjct: 67  EDTGHLREDFSLLTDPAIRAIDVFFPIMHGPMGEDGTIQGVFEMMGKPYVGCGVLASAVG 126

Query: 91  MDKMRSKQVVSSCGVPVCPSILVN--------RFTMDSQHLISPPYVIKPLKGGSSLGII 142
           MDK+ SK +    G+PV P    +           + S   +  P  IKP+  GSS+GI 
Sbjct: 127 MDKVVSKILFEKAGIPVVPYRAFHAADWQRDQAVQITSAETLGYPLFIKPVNMGSSVGIT 186

Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI---AVPKSDF 199
                  +   + Q  + N+  ++L+E ++D  E+ C V+ +     T +    V   +F
Sbjct: 187 KAHDRAELIAGVHQ--ALNYDSKILVETFIDAREIECAVLEEQGHIQTTLPGEVVASKEF 244

Query: 200 YSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
           Y YE KY+    + + +PA+I      +++  A  A  AI   G+SR DF  D    +++
Sbjct: 245 YDYEAKYADDQDSKIEIPAQIDDATTAQIRDFAAKAFAAIDGSGLSRVDFFVDNRDGRLY 304

Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
             E+N  PG T +S++P M  + G S+ EL+  ++  A+
Sbjct: 305 INEVNTLPGFTDISMYPMMWQHMGVSYAELVERLIATAA 343


>gi|312143948|ref|YP_003995394.1| D-alanine/D-alanine ligase [Halanaerobium sp. 'sapolanicus']
 gi|311904599|gb|ADQ15040.1| D-alanine/D-alanine ligase [Halanaerobium sp. 'sapolanicus']
          Length = 349

 Score =  132 bits (333), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 93/341 (27%), Positives = 168/341 (49%), Gaps = 49/341 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS-----VGLVLAHLKP---- 51
           +A++ GG S+E EVS+ S ++  + L+ + + +  I + ++         L +L      
Sbjct: 8   IALIYGGRSAEHEVSILSTRSIYNNLDKSKYNIFPIAISKTGRWFETEKSLEYLNSETNS 67

Query: 52  ----------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
                                 DLAF VLHG +GEDG +Q   E+L+IPY    + +SA+
Sbjct: 68  IPDQADRKLFPLEVIDFLQKNIDLAFPVLHGPYGEDGKIQGFFEILDIPYVGCNLSSSAV 127

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNR----------FTMDSQHLISPPYVIKPLKGGSSL 139
           SMDK   K++ +   +P     ++ +          F  +    +  P+ +KP   GSS+
Sbjct: 128 SMDKELMKKLFAYHDIPQTKFQVLKKSQYKVKRKKEFYEELTKKLGLPFFVKPANMGSSI 187

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVP 195
           GI  + + ++    +  +S++ H ++++IE +V   E+   ++  D  + V+   EI + 
Sbjct: 188 GITKVNEKKNFAEAI--NSAFEHDNKIIIENFVKAREIEASIISLDNEIRVSIPGEI-IA 244

Query: 196 KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255
           + DFY Y+ KY    +  V+PA+I   I KE++ LA  A  A+G   ++R DF     + 
Sbjct: 245 QHDFYDYKAKYQDSKTRLVIPAEIDDKIKKEIKLLAVKAFNAVGGDALARIDFFLTE-NN 303

Query: 256 KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            +   EIN  PG T  S++P +   +G+ +++LL  M+E A
Sbjct: 304 DLLVNEINTMPGFTQFSMYPLLFKESGFPYQKLLDQMIEQA 344


>gi|300781323|ref|ZP_07091177.1| D-alanine--D-alanine ligase [Corynebacterium genitalium ATCC 33030]
 gi|300533030|gb|EFK54091.1| D-alanine--D-alanine ligase [Corynebacterium genitalium ATCC 33030]
          Length = 354

 Score =  132 bits (333), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 100/306 (32%), Positives = 151/306 (49%), Gaps = 40/306 (13%)

Query: 8   ISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGL 67
           ++ EREV+LS   +      DA             G VLA +  D  F VLHG +GEDG 
Sbjct: 66  VAGEREVALSVNPSRRGEFYDA-----------RTGEVLATI--DAVFPVLHGTYGEDGT 112

Query: 68  VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---- 123
           +Q +L+L  +PY   G+L+SA SMDK  +K V  S  VPV   +++    +D +HL    
Sbjct: 113 IQGLLDLAGVPYVGPGVLSSACSMDKQFTKIVARSADVPVTREVVL----VDDEHLDDSD 168

Query: 124 ---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P  +KP +GGSS+GI   K D    LD     +  +  +++IE  + G E+  G
Sbjct: 169 RDYLGLPVFVKPARGGSSIGI--NKVDSWDQLDDAVRFARLYDSKVIIEAELVGDEVEVG 226

Query: 181 VMGDASLDVTEIAVP----------KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
           V+   + D+  IA P          +  FY +E KY     T  +PA     +  +++ L
Sbjct: 227 VIERPNGDL--IASPPAKLNGTSESEEGFYGFETKYLDDVVTATIPAGYDDVMNAKLEEL 284

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +A+ CRG++R DF     S      E+N  PG T +S+FP++   AG S+ ELL 
Sbjct: 285 AIRTFRALDCRGLARVDFFV--TSEGPMLNEVNTMPGFTSISMFPQVFQAAGMSYGELLE 342

Query: 291 WMVEDA 296
            ++  A
Sbjct: 343 TLIATA 348


>gi|170782405|ref|YP_001710738.1| D-alanine-D-alanine ligase [Clavibacter michiganensis subsp.
           sepedonicus]
 gi|169156974|emb|CAQ02143.1| D-alanine-D-alanine ligase [Clavibacter michiganensis subsp.
           sepedonicus]
          Length = 371

 Score =  132 bits (333), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 97/284 (34%), Positives = 146/284 (51%), Gaps = 33/284 (11%)

Query: 27  EDAGFK---VSQID-VDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
           EDAG +   V   D  +RS+G V      D+ F +LHG  GEDG VQ +LEL  +PY  S
Sbjct: 83  EDAGSRELTVRDADGTERSLGPV------DVVFPILHGTQGEDGTVQGMLELAGLPYVGS 136

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNR--------FTMDSQHLISPPYVIKPLK 134
           G+LASAL MDK  +K V+ + G+ V P   V+R           +    +  P  +KP +
Sbjct: 137 GVLASALGMDKHYAKTVLRAAGIEVAPWTTVSRQEWAADPAGVRERAAALGLPAFVKPAR 196

Query: 135 GGSSLGI-IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA-----SLD 188
            GSS+G+  V+  D    LD     ++   D++L+E  + G E+ C ++ +      S  
Sbjct: 197 AGSSVGVSRVVATDG---LDAALEVAFREDDRVLVESGLVGREVECAILDEGPGRAPSAS 253

Query: 189 VT-EIAVPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRS 246
           V  EI V   DFY ++ KY   +    V PA +      E++ L+  A +A+  RG++R 
Sbjct: 254 VAGEIVVSGRDFYDFDAKYLGADGIDLVCPADMTDAELAELRELSIRAFRAVDARGLARV 313

Query: 247 DFLFDPLSRKVFWL-EINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           DF    L+   F L EIN  PG TP+S+FP     +G ++ +L+
Sbjct: 314 DFF---LTADGFVLNEINTMPGFTPISMFPACWEASGLAYPDLI 354


>gi|51598461|ref|YP_072649.1| D-alanyl-alanine synthetase A [Borrelia garinii PBi]
 gi|81610159|sp|Q662G4|DDL_BORGA RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|51573032|gb|AAU07057.1| D-alanine--D-alanine ligase [Borrelia garinii PBi]
          Length = 361

 Score =  132 bits (333), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 88/337 (26%), Positives = 167/337 (49%), Gaps = 50/337 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAG-FKVSQIDVDRSVGL--------------- 44
           + ++ GG+S E E+S  S  +   AL D   + +  + +D+  G+               
Sbjct: 5   LMLIFGGVSFEHEISCKSAYSIYLALLDLNKYNIYPVYIDKCTGIWYLLDSVSDPPKLID 64

Query: 45  --VL---------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87
             VL                +L  D+ F V+HG  GEDG +Q +L++++IP   +GI+ S
Sbjct: 65  IDVLPIVSLLPGIGIFSNNKNLDIDVVFPVVHGRTGEDGAIQGVLKVMDIPCIGAGIIGS 124

Query: 88  ALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQHL-------ISPPYVIKPLKGGSS 138
           A+S +K   K ++ S  +P+ P I   ++   +D + +       +  P ++KP   GSS
Sbjct: 125 AISSNKYFCKLLLKSFNIPLVPFIGFRQYDYFLDKEEVKRNVREALGYPVIVKPAVLGSS 184

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVP 195
           +GI V   +  I  +     +  +   +LIE++++  E+ C ++G+  + +    E+ V 
Sbjct: 185 IGINVAYSENQI--EFFIEEALKYDLTILIEKFIEAREIECSIIGNEKIKIFSPGEVIVQ 242

Query: 196 KSDFYSYELKYSSLNSTHV---LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
              FY Y+ KYS +    +   +PA++  +    ++  AFL ++ +  RG++R DF  + 
Sbjct: 243 DFIFYDYDAKYSVIPGNSIIFNIPAQLETNQLLSIKEYAFLVYKNLELRGMARVDFFVEK 302

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
            S K++  EIN  PG T +S+F +M ++ G  F++L+
Sbjct: 303 KSGKIYLNEINTIPGFTDISMFAKMCSHDGLQFKDLV 339


>gi|33240829|ref|NP_875771.1| D-alanine-D-alanine ligase and related ATP-grasp enzyme
           [Prochlorococcus marinus subsp. marinus str. CCMP1375]
 gi|39930844|sp|Q7VAS4|DDL_PROMA RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|33238358|gb|AAQ00424.1| D-alanine-D-alanine ligase and related ATP-grasp enzymes
           [Prochlorococcus marinus subsp. marinus str. CCMP1375]
          Length = 351

 Score =  132 bits (333), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 106/348 (30%), Positives = 161/348 (46%), Gaps = 56/348 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALED----AGFKVSQIDVDRS--------------- 41
           + ++ GG+S E EVS+ S +    AL+       F V  I +D+                
Sbjct: 8   VGIVFGGVSGEHEVSIKSARTIIHALKHPININKFDVISIYIDKKGKWWPSEIAEKVLES 67

Query: 42  ------------VGLV-LAHL-----KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                       V  + L HL     K  + F VLHG  GEDG +Q   +L   PY  SG
Sbjct: 68  DPNFDKNIFFKQVEFIGLDHLPKETEKIQIWFPVLHGPNGEDGSIQGFFQLTGKPYVGSG 127

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-DSQHL----------ISPPYVIKP 132
           +L SAL MDK+  K   S+ G+P      ++   + D + L          +  P  IKP
Sbjct: 128 VLGSALGMDKIAMKAAFSAAGLPQVNYCEIHSIDLLDKKRLSYLIQKIETQLGYPCFIKP 187

Query: 133 LKGGSSLGI--IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190
              GSS+GI     KK+    LDL          ++++E+ +   EL C V+G   +  +
Sbjct: 188 ANLGSSVGISKAYDKKELLNGLDLAAQLD----SRIVVEKNIKARELECAVIGKKQIKTS 243

Query: 191 EIAVPK--SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
            +   +  SD+Y Y+ KYS  ++  ++PA IP  I KEVQ L+ LA +AI   GI+R DF
Sbjct: 244 CVGEVRYSSDWYDYDSKYSKNSTKTLIPAPIPEKISKEVQSLSILACKAISAEGIARVDF 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            +D     ++  EIN  PG T  S++P +   +G    +L+  ++E A
Sbjct: 304 FYDEEKDSLWINEINTMPGFTEQSMYPMLWDASGIDISQLVARLIESA 351


>gi|311031127|ref|ZP_07709217.1| D-alanyl-alanine synthetase A [Bacillus sp. m3-13]
          Length = 356

 Score =  132 bits (333), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 99/340 (29%), Positives = 168/340 (49%), Gaps = 52/340 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKV------------------------SQI 36
           + +L GG S+E +VSL +  A   A++   F+V                         Q+
Sbjct: 5   LHLLYGGKSAEHQVSLQTALAVTKAIDTDKFEVYPLYITETGEWKRGGLLNGPAESVHQL 64

Query: 37  DVDRSVGLVLAHL----------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
            ++   G  +A L             + F +LHG  GEDG VQ +LELL +PY  +G+LA
Sbjct: 65  KLEEG-GTTIAPLALTYEEETEQTQTVVFPLLHGPNGEDGTVQGMLELLNLPYVGNGVLA 123

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGS 137
           S+  MDK+  K +    G+P        R   +          +  +  P  +KP   GS
Sbjct: 124 SSAGMDKVIMKNLFDQAGLPQVGYAHFLRSEWEKAADTTYEKVESELGYPCFVKPANLGS 183

Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI-ELTCGVMGDASLD---VTEIA 193
           S+GI   K  +   L+     ++++  ++++EQ ++G  E+  GV+G+   +   + EIA
Sbjct: 184 SVGISKAKNREE--LETAFREAFDYDRKIIVEQGLEGAREIEIGVLGNDEPECSVIGEIA 241

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
            PK++FY Y+ KY   ++  ++PA+I  DIY++V+ +A  A +AI   G+ R+DF F   
Sbjct: 242 -PKTEFYDYKAKYEDGDTAMIIPAEISEDIYEQVKEMAITAFKAIDGAGLVRADF-FLTK 299

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
             K++  E+N  PG TP S+FP +  +   S+ +L+  +V
Sbjct: 300 EGKLYINEVNTMPGFTPFSMFPLLWQHTDVSYPQLIEKLV 339


>gi|325678813|ref|ZP_08158411.1| D-ala D-ala ligase N-terminal domain protein [Ruminococcus albus 8]
 gi|324109317|gb|EGC03535.1| D-ala D-ala ligase N-terminal domain protein [Ruminococcus albus 8]
          Length = 361

 Score =  132 bits (333), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 82/256 (32%), Positives = 142/256 (55%), Gaps = 23/256 (8%)

Query: 47  AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP 106
           +++K D+ F VLHG  GEDG +Q I ++ E+P+    +++SA  MDK  +  ++ + G+ 
Sbjct: 96  SNIKVDVVFPVLHGKNGEDGTIQGIFQMAEVPFVGCDLISSACCMDKDVTHTILEAHGIK 155

Query: 107 VCPSI---------LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
               I         L  +  +  + L  P YV KP   GSS+GI      ++  L+ L++
Sbjct: 156 TAKWISMIYRDLAELDEKCALMEKKLGYPMYV-KPANCGSSVGI-----SKAHDLEELKA 209

Query: 158 ---SSWNHGDQLLIEQYVDGIELTCGVMGDAS---LDVTEIAVPKSDFYSYELKYSSLNS 211
              +++ H  ++++EQ V G+EL C VMG+ +     V +IA   ++FY Y+ KY++  S
Sbjct: 210 GIKAAFTHDQKVVVEQEVKGVELECAVMGNDTPFASTVGQIAAA-NEFYDYDAKYNNAAS 268

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271
              +PA +   + +EV+ +A  A +A+GC G++R DF       +V   EIN  PG T +
Sbjct: 269 KTYIPAMVDEKVIEEVRDVAVRAFKAMGCGGLARVDFFLSDKG-EVILNEINTLPGHTKI 327

Query: 272 SIFPEMAAYAGYSFRE 287
           S++P++  +AG S+ E
Sbjct: 328 SMYPKLMEHAGISYAE 343


>gi|82775721|ref|YP_402068.1| D-alanyl-alanine synthetase A [Shigella dysenteriae Sd197]
 gi|309786933|ref|ZP_07681546.1| D-alanine--D-alanine ligase [Shigella dysenteriae 1617]
 gi|81239869|gb|ABB60579.1| D-alanine-D-alanine ligase A [Shigella dysenteriae Sd197]
 gi|308925259|gb|EFP70753.1| D-alanine--D-alanine ligase [Shigella dysenteriae 1617]
          Length = 364

 Score =  132 bits (333), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 92/346 (26%), Positives = 168/346 (48%), Gaps = 55/346 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR--------SVGLVL-----A 47
           + ++ GG S+E EVSL S K    A++ + F V  + +D+        +   +L     A
Sbjct: 6   VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPA 65

Query: 48  H--LKP----------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
           H  L P                            D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  HIALSPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVIK 131
           P+  S +LASA  MDK  +K+++   G+ + P I + R    +      +  +  P  +K
Sbjct: 126 PFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  +  ++   +    +  ++H  ++++EQ + G E+ C V+G+ +   + 
Sbjct: 186 PANQGSSVGVSKVTSEEQYAIAADLAFEFDH--KVIVEQGLKGREIECAVLGNDNPQAST 243

Query: 192 IA--VPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               V  SDFY+Y+ KY   +    V+PA I  +I  +++ +A  A+Q +GC G++R D 
Sbjct: 244 CGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
              P   +V   EIN  PG T +S++P++   +G  + +L+  ++E
Sbjct: 304 FLTP-ENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIE 348


>gi|161506745|ref|YP_001576695.1| D-alanyl-alanine synthetase A [Lactobacillus helveticus DPC 4571]
 gi|260102150|ref|ZP_05752387.1| D-alanine-D-alanine ligase A [Lactobacillus helveticus DSM 20075]
 gi|190359176|sp|A8YWP6|DDL_LACH4 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|160347734|gb|ABX26408.1| D-alanine-D-alanine ligase [Lactobacillus helveticus DPC 4571]
 gi|260084040|gb|EEW68160.1| D-alanine-D-alanine ligase A [Lactobacillus helveticus DSM 20075]
 gi|328464938|gb|EGF36226.1| D-alanyl-alanine synthetase A [Lactobacillus helveticus MTCC 5463]
          Length = 360

 Score =  132 bits (333), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 98/341 (28%), Positives = 160/341 (46%), Gaps = 51/341 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-----------------DRSVG 43
           + ++ GG SSE EVS+ S +    A++   F V  I +                 D S  
Sbjct: 7   VGLIFGGNSSEYEVSIVSCRNIYKAIDKEKFDVHPIWITNEGYFANEEESFKVLEDPSYQ 66

Query: 44  LVLAHL--------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
           +   H               + D+ F ++HGN GEDG++Q +  L+  P+    +LA+A+
Sbjct: 67  VKNPHKVHNISNLIELENLPEIDVFFPIVHGNLGEDGVLQGLFRLMNKPFVGDDVLAAAV 126

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPY-----------VIKPLKGGSS 138
           +MDK  +K +    GVPV   I + RF  D ++     Y            +KP   GSS
Sbjct: 127 TMDKEFTKILAQRVGVPVADWITIKRFEYDDKNNDKLDYEKVAEKLGRDMFVKPSNQGSS 186

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS---LDVTEIAVP 195
           +G+  +         L +  ++ + D++L+E+ V G E+   V+G+       V +I   
Sbjct: 187 VGVSHVTNADEYAAALKE--AFKYDDKVLVEETVPGTEVETAVLGNDKPIVAGVGQITNA 244

Query: 196 KSDFYSYELKYSSLNSTHVL--PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
           K  FYSY+ KY   NST  L  PA +P +I   V+R A   ++   C G++R D +  P 
Sbjct: 245 KGSFYSYKNKYDD-NSTSKLQIPADLPQEIIDTVRRNARKVYEVTECSGMARIDSMLTP- 302

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             KV   E+N  PG T +S++P++   AG  + EL+  ++E
Sbjct: 303 GGKVVLTEVNALPGFTNISMYPKLFEEAGVPYTELITRLIE 343


>gi|257054969|ref|YP_003132801.1| D-alanyl-alanine synthetase A [Saccharomonospora viridis DSM 43017]
 gi|256584841|gb|ACU95974.1| D-alanine--D-alanine ligase [Saccharomonospora viridis DSM 43017]
          Length = 365

 Score =  132 bits (333), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 86/257 (33%), Positives = 137/257 (53%), Gaps = 15/257 (5%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+ F  LHG FGEDG +Q +LEL +IPY  SG+ ASA +MDK  +K+++++ G+ V    
Sbjct: 104 DVVFPALHGAFGEDGTIQGLLELADIPYVGSGVFASAAAMDKEYAKKLLAAEGLEVGRYA 163

Query: 112 LVNR----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL 167
           +V R       + +  +  P  +KP + GSS+GI  +  D S  LD   + +     ++L
Sbjct: 164 VVRRGQDTLPAEERERLGLPVFVKPARAGSSIGISRV-TDWS-QLDAAIAHARQTDPKVL 221

Query: 168 IEQYVDGIELTCGVM--GDASLDV---TEIAVPKSD---FYSYELKYSSLNSTHVLPAKI 219
           +E    G E+ CGV+   D  ++    +EI V   D   +Y +E KY   ++   +PAK+
Sbjct: 222 VEAETVGREVECGVLEFADGRVEASFPSEIRVLSDDADAWYDFETKYLGEDAELDIPAKL 281

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279
              I + ++ +A  A  A+ C+G++R DF   P    +   E+N  PG TP S +P+M  
Sbjct: 282 DDTITERLRDMAVRAFTALECQGLARVDFFVGP-DGTLTVNEVNTMPGFTPTSAYPKMWE 340

Query: 280 YAGYSFRELLLWMVEDA 296
             G  +  LL  +VE A
Sbjct: 341 VTGIDYPTLLTTLVETA 357


>gi|189499957|ref|YP_001959427.1| D-alanyl-alanine synthetase A [Chlorobium phaeobacteroides BS1]
 gi|229463740|sp|B3EQ14|DDL_CHLPB RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|189495398|gb|ACE03946.1| D-alanine/D-alanine ligase [Chlorobium phaeobacteroides BS1]
          Length = 360

 Score =  132 bits (333), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 99/351 (28%), Positives = 164/351 (46%), Gaps = 57/351 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGF--------------------KVSQIDV-- 38
           +A+L GG SSE E+S+ S KA ++ ++   +                    KV  +D+  
Sbjct: 6   VALLFGGKSSEHEISIISAKAVSAHIDRTTYTLFPLYISRDGRWFKGRTARKVLDLDITG 65

Query: 39  ----------DRSVGLVLAHLKPDL------------AFNVLHGNFGEDGLVQAILELLE 76
                     +R +  +  +   DL            AF VLHG +GEDG +Q +LE+  
Sbjct: 66  LLKSRTIETTNRQLLAMTENRDEDLFDFNFQKEGIEVAFPVLHGAYGEDGKIQGLLEVFA 125

Query: 77  IPYTHSGILASALSMDKMRSKQVVSSCGVPVC-------PSILVNRFTMDS--QHLISPP 127
           IPYT   + +S+++MDK  +K      G+ V        P  L NR  +    +   +PP
Sbjct: 126 IPYTGCNVQSSSMTMDKEITKLCAVQAGIHVADYMTVLRPDYLNNRSAIAETIKKRFAPP 185

Query: 128 YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS- 186
           + +KP   GSS+GI  I     +   L ++   +   ++L+E+ ++G E+   V+G+   
Sbjct: 186 FFVKPANLGSSVGIAKIHSFDELENALDEACRLDV--KILVEKAIEGREVEVAVLGNEHP 243

Query: 187 -LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
              V     P  DFY +  KY   ++   +PA++  D    +Q     A +A+GC G+SR
Sbjct: 244 IASVPGEIEPGGDFYDFTDKYIDGSARLHIPARVDADTSARLQEEGIKAFRALGCSGMSR 303

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            DF  +  S ++   EIN  PG T +S++P +  +AG  F EL+  +V  A
Sbjct: 304 IDFFVEKGSGRIILNEINSIPGFTSISMYPMLMEHAGIGFTELIDRLVRFA 354


>gi|269957072|ref|YP_003326861.1| D-alanine/D-alanine ligase [Xylanimonas cellulosilytica DSM 15894]
 gi|269305753|gb|ACZ31303.1| D-alanine/D-alanine ligase [Xylanimonas cellulosilytica DSM 15894]
          Length = 377

 Score =  132 bits (333), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 80/260 (30%), Positives = 134/260 (51%), Gaps = 20/260 (7%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+ F +LHG FGEDG +Q +LEL ++ Y  +G+LASA+ MDK   K V+   G+PV P  
Sbjct: 111 DVVFPLLHGPFGEDGTLQGLLELADVHYVGAGVLASAVGMDKHFMKLVLEGQGLPVGPYT 170

Query: 112 LVNRFTMDSQH--------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
           ++     +++          +  P  +KP + GSSLGI  +     +P  + ++    H 
Sbjct: 171 VILPRDWETRREEATAAVARLGLPVFVKPARAGSSLGITRVDDLADLPAAVAEAQ--RHD 228

Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKS--------DFYSYELKYSSLNSTHV- 214
            ++++EQ ++G E+ C V+G  S      ++P           FY +E KY   ++  + 
Sbjct: 229 PKVIVEQGIEGREVECAVLGGRSGLPARASLPGEIVVDHGAHAFYDFEAKYLDESAVQLR 288

Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274
            PA +P  +  +V+ +A     A+G  G+SR D    P  R V   EIN  PG TP S++
Sbjct: 289 CPADLPDKVVAQVRSIAVRTFDAVGAEGLSRVDVFVTPDER-VIVNEINTMPGFTPFSMY 347

Query: 275 PEMAAYAGYSFRELLLWMVE 294
           P M    G ++ +L+  +++
Sbjct: 348 PRMWEATGLTYPQLIDELIQ 367


>gi|161779864|gb|ABX79422.1| VanC4 [Enterococcus casseliflavus]
          Length = 350

 Score =  132 bits (333), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 80/249 (32%), Positives = 134/249 (53%), Gaps = 11/249 (4%)

Query: 49  LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
           L PD+ F ++HG +GEDG +Q + EL+++PY   G+ ASAL M+K    Q  ++ GV   
Sbjct: 93  LVPDVLFPIMHGKYGEDGSIQGLFELMKLPYVGCGVAASALCMNKWLLHQAAAAIGVQSA 152

Query: 109 PSILVNRFTMDSQHLIS------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
           P+IL+       Q + +       P   KP + GSS GI  +   + I   L    ++ +
Sbjct: 153 PTILLTNQDNQQQQIEAFIQTHGFPVFFKPNEAGSSKGITKVTCVEEIAPAL--KEAFAY 210

Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK--SDFYSYELKYSSLNSTHVLPAKIP 220
              +L+++ + G+E+ CG++G+ SL V           F+ +E KY  +++   +PA +P
Sbjct: 211 CSAVLLQKNIAGVEIGCGILGNDSLTVGACDAISLVEGFFDFEEKYQLISAKITVPAPLP 270

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280
             I  +V+  A L + ++G +G++R DF F     +++  EIN  PG T  S +P M A 
Sbjct: 271 ETIETKVKEQAQLLYHSLGLKGLARIDF-FVTDQGELYLNEINTMPGFTSHSRYPAMMAA 329

Query: 281 AGYSFRELL 289
            G S++ELL
Sbjct: 330 IGLSYQELL 338


>gi|253579173|ref|ZP_04856443.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251849271|gb|EES77231.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 350

 Score =  132 bits (333), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 100/339 (29%), Positives = 167/339 (49%), Gaps = 49/339 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKV-------------------SQIDVDRS 41
           + VL GG S+ER VS++SG     AL   G +                    S+ DVD +
Sbjct: 3   IVVLAGGTSTERTVSITSGTGICKALRQKGHQAILVDIFCGIENVDRENPFPSEYDVDAA 62

Query: 42  VGLVLA------HLKP-----------------DLAFNVLHGNFGEDGLVQAILELLEIP 78
              + A       +K                  D+ F  LHG  GEDG VQA  +L+ I 
Sbjct: 63  SEYMSAFNDRIEQMKKERRSFFGPNVLKLCEAADIVFLGLHGANGEDGKVQATFDLMGIK 122

Query: 79  YTHSGILASALSMDKMRSKQV--VSSCGVPVCPSILVNRFTMDSQHL-ISPPYVIKPLKG 135
           YT +G L+SAL+MDK  +KQ+  +++   P   S++    T D + L +  P V+K   G
Sbjct: 123 YTGTGYLSSALAMDKGITKQMFLMNNVPTPRGVSMVKEEMTTDLKALGMEFPVVVKTCCG 182

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195
           GSS+G+ ++  DQ+     L+  ++++ +++++E+Y+ G E +  V+   +  + EIA P
Sbjct: 183 GSSVGVYIV-NDQAEYEQALK-DAYSYENEVVVEEYIKGREFSVAVVDGKAYPIIEIA-P 239

Query: 196 KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255
              FY Y+ KY + ++    PA+I  ++ +++Q  A    +A+   G  R DF+    + 
Sbjct: 240 LQGFYDYKNKYQAGSTIETCPAEISPELTEKMQHYAEAGAKALFMEGYCRLDFMMKE-NG 298

Query: 256 KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            ++ LE N  PGMTP S+ P+ A   G  +  L   ++E
Sbjct: 299 DMYCLEANTLPGMTPTSLIPQEAKVLGIDYPTLCEKLIE 337


>gi|225870069|ref|YP_002746016.1| D-alanine--D-alanine ligase [Streptococcus equi subsp. equi 4047]
 gi|254767739|sp|C0M8S4|DDL_STRE4 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|225699473|emb|CAW92994.1| D-alanine--D-alanine ligase [Streptococcus equi subsp. equi 4047]
          Length = 348

 Score =  132 bits (333), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 95/332 (28%), Positives = 169/332 (50%), Gaps = 43/332 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           + +L GG S+EREVS+ S ++   A++   F V    + ++   +               
Sbjct: 6   LILLYGGRSAEREVSVLSAESVMRAVDYTKFFVKTYFISQTGQFIKTQEFSSRPTLTERL 65

Query: 49  -----------LKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
                      ++P        + F VLHG  GEDG +Q  LE+L++PY  + IL+S+++
Sbjct: 66  MTNDTIRLEQQIRPSDIYEEGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGTNILSSSVA 125

Query: 91  MDKMRSKQVVSSCGVP-VCPSILV-----NRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
           MDK+ +K+V+ S G+P V  ++ +     +R   +++ ++S P  +KP   GSS+GI   
Sbjct: 126 MDKITTKRVLESAGIPQVAYTVYIEGQDLDRCLAETEAVLSYPVFVKPANMGSSVGISKA 185

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYS 201
           + ++ +   +L + +++   ++LIEQ V   E+  G++G+  +  T   E+ V   DFY 
Sbjct: 186 ESEEELRAAILLALTYD--SRILIEQGVLAREIEVGLLGNTDVKSTLPGEV-VKNVDFYD 242

Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
           Y+ KY     T  +PA I       ++  A  A +AIG  G+SR DF       +++  E
Sbjct: 243 YQAKYIDNEITMAIPAAIDESAMTSMRTYAETAFKAIGACGLSRCDFFLGQ-DGQIYLNE 301

Query: 262 INVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +N  PG T  S++P +  + G S+ EL+  +V
Sbjct: 302 LNTMPGFTQWSMYPLLWEHMGLSYAELIEELV 333


>gi|322389127|ref|ZP_08062690.1| D-alanine-D-alanine ligase [Streptococcus parasanguinis ATCC 903]
 gi|321144169|gb|EFX39584.1| D-alanine-D-alanine ligase [Streptococcus parasanguinis ATCC 903]
          Length = 348

 Score =  132 bits (333), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 96/331 (29%), Positives = 161/331 (48%), Gaps = 43/331 (12%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQ--------------------------- 35
           +L GG S+EREVS+ S ++   A++   F V                             
Sbjct: 8   LLYGGRSAEREVSVLSAESVMRAIDYQAFSVQTYFITQSGDFIQTQAFEEKPADDEKLMT 67

Query: 36  ---IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
              +D  + V     + +  + F VLHG  GEDG +Q  LE+L++PY   GILAS+++MD
Sbjct: 68  NDTVDWSKKVAPSAIYKEGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCGILASSVAMD 127

Query: 93  KMRSKQVVSSCGVPVCPSILV------NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           K+ +K+V+ S G+P  P + V             +  +S P   KP   GSS+GI   K 
Sbjct: 128 KITTKRVLESAGIPQVPYVAVVEGDDLEEKIAAIEATLSYPVFTKPSNMGSSVGI--SKS 185

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYE 203
           +    L      ++ +  ++L+EQ V+  E+  G++G+  +  T   E+ V    FY Y+
Sbjct: 186 ENQTELRAALELAFKYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVAFYDYD 244

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            KY     T  +PA++  ++ K ++  A  A +AIG  G++R DF +     ++F  E+N
Sbjct: 245 AKYIDNKITMAIPAQLDPEVVKTMRTNAEKAFRAIGGLGLARCDFFYTD-KGEIFLNELN 303

Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             PG T  S++P +    G ++ +L+  +VE
Sbjct: 304 TMPGFTQWSMYPLLWDNMGLNYTDLITKLVE 334


>gi|317125447|ref|YP_004099559.1| D-alanine--D-alanine ligase [Intrasporangium calvum DSM 43043]
 gi|315589535|gb|ADU48832.1| D-alanine--D-alanine ligase [Intrasporangium calvum DSM 43043]
          Length = 394

 Score =  132 bits (333), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 87/254 (34%), Positives = 129/254 (50%), Gaps = 19/254 (7%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+   +LHG FGEDG +Q  LEL +I Y  SG+ ASA  MDK   K V +  G+PV P  
Sbjct: 129 DVVLPLLHGPFGEDGTLQGFLELSDIRYVGSGVFASAAGMDKHYMKVVFAGHGLPVGPYA 188

Query: 112 LVN--------RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
           ++            +DS   +  P  +KP + GSS+GI   K D    L+     +  H 
Sbjct: 189 VITDRAWRADRAAALDSCAALDFPVFVKPARAGSSMGI--SKVDDPGLLEAAIERAREHD 246

Query: 164 DQLLIEQYVDGIELTC------GVMGDASLDVTEIAVPKSD-FYSYELKY-SSLNSTHVL 215
            ++++E  + G E+ C      G  G  +  V E+AV  +  FY +E KY +  +     
Sbjct: 247 PKVIVEAGITGREIECAVLEGHGTQGPRTSQVGEVAVHDNHAFYDFEAKYLAEADVDLSC 306

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275
           PA +P  +  EV+RL+  A +A+GC G++R D  +    R V   EIN  PG TP S++P
Sbjct: 307 PADVPAHVSDEVRRLSAAAFEALGCEGLARVDCFYAEDGR-VLINEINTMPGFTPHSMYP 365

Query: 276 EMAAYAGYSFRELL 289
            M A +G  +  L+
Sbjct: 366 RMWAASGLPYTALI 379


>gi|298372650|ref|ZP_06982640.1| D-alanine--D-alanine ligase [Bacteroidetes oral taxon 274 str.
           F0058]
 gi|298275554|gb|EFI17105.1| D-alanine--D-alanine ligase [Bacteroidetes oral taxon 274 str.
           F0058]
          Length = 322

 Score =  132 bits (333), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 92/326 (28%), Positives = 167/326 (51%), Gaps = 38/326 (11%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKV----------------SQIDVDRSVGL 44
           +A++ GG SSE EVSL S     S + D   K                  +  +D++   
Sbjct: 4   IAIVAGGDSSECEVSLRSADGIMSFIPDDYEKYIVTIIGKKWEVHLPDDRRAPIDKNDFS 63

Query: 45  VLAHLKP---DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
            +A  K    D A+  +HG  GE+G++Q   +L+ +P++   +LASAL+ +K      + 
Sbjct: 64  FVADGKKFTFDFAYITIHGTPGENGILQGYFDLIGMPFSCCDVLASALTFNKYVCNCFLK 123

Query: 102 SCGVPVCPSILV-NRFTMDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
           +  + V  S+L+     +D++ ++     P  +KP  GGSS     +K       D+LQ 
Sbjct: 124 NFDINVAESVLLRTNQVVDNESVVRELGLPLFVKPAAGGSSFCTTKVKSK-----DMLQQ 178

Query: 158 S---SWNHGDQLLIEQYVDGIELTCGVMGDAS----LDVTEIAVPKSDFYSYELKYSSLN 210
           +   ++   D++++E +VDG E+TCG+         L +TE+ V K++F+ Y  KY++  
Sbjct: 179 AIEEAFAEADEVIVESFVDGTEVTCGMYKTKGKTVILPLTEV-VSKNEFFDYNAKYNN-Q 236

Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270
           S  + PA+I   + + +++     ++ I  +GI R+D++ +P S ++  LE+N  PGMTP
Sbjct: 237 SDEITPARISDKLTEAIKQTTAQIYELIAAKGIIRADYIIEP-SGRIVLLEVNTTPGMTP 295

Query: 271 VSIFPEMAAYAGYSFRELLLWMVEDA 296
            S  P+    AG    E++  ++ED+
Sbjct: 296 QSFLPQQIRAAGMDIAEVMRDIIEDS 321


>gi|158318443|ref|YP_001510951.1| D-alanine--D-alanine ligase [Frankia sp. EAN1pec]
 gi|158113848|gb|ABW16045.1| D-alanine--D-alanine ligase [Frankia sp. EAN1pec]
          Length = 321

 Score =  132 bits (333), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 99/297 (33%), Positives = 148/297 (49%), Gaps = 18/297 (6%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62
           +L GG+S EREVSL SG     AL   G +    DVD +    LA   PD+ F VLHG  
Sbjct: 9   ILAGGLSPEREVSLHSGGKLRDALTRIGVEAELADVDAATLPALAADPPDVVFPVLHGTS 68

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---FTMD 119
           GEDG ++ +L+L  +PY  +   A  ++ DK  +K  V + GV    ++ + R     + 
Sbjct: 69  GEDGTIREVLDLYGLPYVGALPPACRVAFDKATAKAAVGAAGVATPEAVTLPREAFHDLG 128

Query: 120 SQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
           +  LI         P V+KP  GGS+ G+  +     +   L+  S + + D  LIEQ V
Sbjct: 129 AAALIERIVARLGLPVVVKPRAGGSAFGVTHVDDAGGLAEALM--SCFGYHDSALIEQAV 186

Query: 173 DGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
            G+E+  GV+    G  +L   EI  P++  Y Y  +Y++  ++   PA++  D+     
Sbjct: 187 AGVEIAIGVVDSGDGPVALPAVEIE-PRAGVYDYAARYTAGATSFFTPARLHKDVLWAAA 245

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285
             A  AH+ +G R +SR+D + D      F LE+NV PGMT  S +P     AG  F
Sbjct: 246 ETALTAHRVLGLRDLSRTDMIVDRDGVAQF-LEVNVAPGMTDTSTWPMGLHAAGLDF 301


>gi|260584699|ref|ZP_05852445.1| D-alanine--D-alanine ligase [Granulicatella elegans ATCC 700633]
 gi|260157722|gb|EEW92792.1| D-alanine--D-alanine ligase [Granulicatella elegans ATCC 700633]
          Length = 359

 Score =  132 bits (332), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 84/282 (29%), Positives = 149/282 (52%), Gaps = 18/282 (6%)

Query: 27  EDAGFKVSQIDVDRSVGLVLAHLKPD--LAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84
           ++A F  S+ +V   V +    LK +  + F VLHG  GEDG +Q + E++++PY   G+
Sbjct: 70  QEAHFATSEGEVSTGVLVTPYDLKEEECVVFPVLHGPNGEDGTIQGLFEMMDVPYVGCGV 129

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVNR----------FTMDSQHLISPPYVIKPLK 134
           LASA  MDK+ SKQ+    G+P  P +  N+          F      LI P +V KP  
Sbjct: 130 LASACGMDKITSKQLFQQAGLPQLPYVPFNKTQWKQNPESIFNKIEGTLIYPVFV-KPAN 188

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD--ASLDVTEI 192
            GSS+GI   +  + +   ++++  ++   ++++EQ ++  E+ C V+G+  A+  V   
Sbjct: 189 MGSSVGISKAENREELTTAIVEALKYDR--RIVVEQGIEAREIECAVLGNDEANTSVVGE 246

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            V  S FY Y  KY +   T  +PA+I  ++  +V+  +  A +AI   G++R DF    
Sbjct: 247 IVKTSGFYDYNEKYINNTVTLEIPAQISDEVSAKVREYSAKAFRAIDGSGLTRCDFFLTE 306

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            +  ++  E+N  PG T  S++P +    G S+++L+  +++
Sbjct: 307 -TNDIYINEVNTLPGFTQFSMYPLLWEKTGISYKDLVEELIQ 347


>gi|13471742|ref|NP_103309.1| D-alanyl-alanine synthetase A [Mesorhizobium loti MAFF303099]
 gi|39931184|sp|Q98JS0|DDLA_RHILO RecName: Full=D-alanine--D-alanine ligase A; AltName:
           Full=D-Ala-D-Ala ligase A; AltName: Full=D-alanylalanine
           synthetase A
 gi|14022486|dbj|BAB49095.1| D-alanine-D-alanine ligase A [Mesorhizobium loti MAFF303099]
          Length = 357

 Score =  132 bits (332), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 84/256 (32%), Positives = 133/256 (51%), Gaps = 14/256 (5%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+ F VLHG FGEDG VQ   E+ ++ Y   GILASA +MDK  +K+++   G+ V  S+
Sbjct: 98  DVVFPVLHGPFGEDGSVQGYAEVADVAYVGCGILASAAAMDKDVAKRLLREAGLAVARSV 157

Query: 112 LVNRFTMDSQHLISP----PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL 167
            V +  + S   I+     P+  KP + GSS G+  +        +    ++  +  + L
Sbjct: 158 TVLKGDVGSFQEIAGALGLPFFAKPARQGSSFGVSKVHDRDG--FEQAVETALRYDSKAL 215

Query: 168 IEQYVDGIELTCGVM--GDASLDVTE----IAVPKSDFYSYELKYSSLNSTHV-LPAKIP 220
           IE++VDG E+ C V+   D SL V+     I   K  FY+YE KY       V +PA +P
Sbjct: 216 IEEFVDGREIECSVLERADGSLTVSPPGEIIPADKHGFYTYEAKYFDAEGAVVKVPADVP 275

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280
            D+      +A  A +A+GC  ++R DF F      +   E+N  PG T +S++ +  A 
Sbjct: 276 ADVVARTSEMAARAFRALGCEAMARVDF-FLRADGSLLVNEVNTLPGFTDISMYAKALAA 334

Query: 281 AGYSFRELLLWMVEDA 296
           AG  + +++  ++E A
Sbjct: 335 AGIGYSKVIDVLIEHA 350


>gi|296876858|ref|ZP_06900906.1| D-alanine--D-alanine ligase [Streptococcus parasanguinis ATCC
           15912]
 gi|296432360|gb|EFH18159.1| D-alanine--D-alanine ligase [Streptococcus parasanguinis ATCC
           15912]
          Length = 348

 Score =  132 bits (332), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 96/331 (29%), Positives = 162/331 (48%), Gaps = 43/331 (12%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQ--------------------------- 35
           +L GG S+EREVS+ S ++   A++   F V                             
Sbjct: 8   LLYGGRSAEREVSVLSAESVMRAIDYQAFSVQTYFITQSGDFIQTQAFEEKPADDEKLMT 67

Query: 36  ---IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
              +D  + V     + +  + F VLHG  GEDG +Q  LE+L++PY   GILAS+++MD
Sbjct: 68  NDTVDWSKKVAPSAIYKEGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCGILASSVAMD 127

Query: 93  KMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIKPLKGGSSLGIIVIKK 146
           K+ +K+V+ S G+P  P + V       + +      +S P   KP   GSS+GI   K 
Sbjct: 128 KITTKRVLESAGIPQVPYVAVVEGDDLEEKIAAIEANLSYPVFTKPSNMGSSVGI--SKS 185

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYE 203
           +    L      ++ +  ++L+EQ V+  E+  G++G+  +  T   E+ V    FY Y+
Sbjct: 186 ENQTELRTALELAFKYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVAFYDYD 244

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            KY     T  +PA++  ++ K ++  A  A +AIG  G++R DF +     ++F  E+N
Sbjct: 245 AKYIDNKITMAIPAQLDPEVVKTMRTNAEKAFRAIGGLGLARCDFFYTD-KGEIFLNELN 303

Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             PG T  S++P +    G ++ +L+  +VE
Sbjct: 304 TMPGFTQWSMYPLLWDNMGLNYTDLITKLVE 334


>gi|312866057|ref|ZP_07726278.1| D-ala D-ala ligase N-terminal domain protein [Streptococcus downei
           F0415]
 gi|311098461|gb|EFQ56684.1| D-ala D-ala ligase N-terminal domain protein [Streptococcus downei
           F0415]
          Length = 348

 Score =  132 bits (332), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 95/326 (29%), Positives = 159/326 (48%), Gaps = 43/326 (13%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH-------------- 48
           +L GG S+EREVS+ S ++   A++   F V    + ++   + A               
Sbjct: 8   LLYGGRSAEREVSVLSAESVMRAVDYDKFNVKTYFITQAGDFIKAQEFTSQPSESEKLMT 67

Query: 49  ---------LKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
                    +KP        + F VLHG  GEDG +Q  LE+L +PY  + +L+S+++MD
Sbjct: 68  NATVDASQAVKPSDIYQENAIVFPVLHGPMGEDGSIQGFLEVLRLPYVGTNVLSSSVAMD 127

Query: 93  KMRSKQVVSSCGVPVCPSI-------LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145
           K+ +K V+ S GVP    +       +       SQ L  P +V KP   GSS+GI   +
Sbjct: 128 KITTKHVLESTGVPQVAYVTYMEGQDMAEAIARASQKLTYPVFV-KPANMGSSVGISKAE 186

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD--FYSYE 203
            D  +   L    +  +  ++LIEQ V   E+  G++G++ +  T+      D  FY YE
Sbjct: 187 TDGELREAL--ELALKYDSRILIEQGVVAREIEVGILGNSQVKTTQPGEVVKDVAFYDYE 244

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            KY     +  +PA++P ++  +++  A  A +AIG  G+SR DF     S +++  E+N
Sbjct: 245 AKYIDNKISMAIPAQVPEEVMDKMRTYAETAFRAIGGCGLSRCDFFLTE-SGEIYLNELN 303

Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELL 289
             PG T  S++P +    G  +++L+
Sbjct: 304 TMPGFTQWSMYPLLWENMGLPYKDLI 329


>gi|309388982|gb|ADO76862.1| D-alanine/D-alanine ligase [Halanaerobium praevalens DSM 2228]
          Length = 350

 Score =  132 bits (332), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 93/338 (27%), Positives = 159/338 (47%), Gaps = 46/338 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR---------SVGLVLA---- 47
           +A+  GG S+E E+SL S ++  +A +   + +  + +D+         S  ++L+    
Sbjct: 8   IALFFGGRSAEHEISLLSARSIYTAFDKKKYDIFPVAIDKKGFFINLEKSKKILLSDKKQ 67

Query: 48  ------------------HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
                              LK DL F VLHG FGEDG +Q  LE L+I Y    + +SA+
Sbjct: 68  VPASANKSILTKELLEFLELKVDLVFPVLHGPFGEDGKIQGFLETLDINYIGCDLSSSAV 127

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL----------ISPPYVIKPLKGGSSL 139
            MDK   KQ+ +   +P     + N+  ++ +               P+ +KP   GSS+
Sbjct: 128 GMDKAFMKQIFAYNNIPQAEFEIFNKSDLEKKSKKEVFASFSAKFGIPFFVKPANMGSSI 187

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVTEIA--VPK 196
           GI  +K  +S    L +   ++   +L+IE+ +   EL   V+  +  + V+     + +
Sbjct: 188 GINQVKDFKSFVKALAEGFKYDL--KLIIEENIAARELESAVLATNTGIKVSTAGEIISE 245

Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256
           +DFY Y+ KY    +  ++PA +      +++ ++  A QAIG  G+SR DF  D     
Sbjct: 246 NDFYDYQAKYEDQKTKLIIPAPVSPTTAAKIKEISINAFQAIGALGLSRLDFFVDEEKEV 305

Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           +   EIN  PG T  S++P +    G SF E+L  +V+
Sbjct: 306 ILVNEINTMPGFTKFSMYPLLFKDMGISFSEILDSLVK 343


>gi|299538289|ref|ZP_07051574.1| D-alanine--D-alanine ligase B [Lysinibacillus fusiformis ZC1]
 gi|298726491|gb|EFI67081.1| D-alanine--D-alanine ligase B [Lysinibacillus fusiformis ZC1]
          Length = 359

 Score =  132 bits (332), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 99/339 (29%), Positives = 163/339 (48%), Gaps = 56/339 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI----DVDRSVGLVLA--------- 47
           + +L GG S+E EVSLS+ +A   AL    ++V  I    D +   G  L          
Sbjct: 5   IGLLYGGKSAEHEVSLSTARAVTGALNFEEYEVYPIFITSDGEWRRGERLEKPVSAIEEL 64

Query: 48  -----------------------HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84
                                   +K D+ F +LHG  GEDG VQ +LE+L +PY  +G+
Sbjct: 65  QFGDNTTILENNITDFLIDKSGNEVKFDVIFPLLHGTNGEDGTVQGLLEVLNLPYVGNGV 124

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVNR--FTMDSQHLISP-------PYVIKPLKG 135
           LAS+  MDK+  KQ+    G+P  P     R  +  + Q +I         P  +KP   
Sbjct: 125 LASSAGMDKVVMKQLFEIAGLPQVPYTYFIRSEWKNEQQAIIERCENNLNWPMFVKPANL 184

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195
           GSS+GI      + +   +  +  ++   ++++EQ +   E+   V+G+   D  E++VP
Sbjct: 185 GSSVGISKATDREQLVKAIEVALQYDR--KIVVEQGIVAREVELAVLGN---DYPEVSVP 239

Query: 196 K-----SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
                 +DFY Y+ KY   ++  ++PA++P++    ++ LA  A +AI   G+ R+DF F
Sbjct: 240 GEIKPVTDFYDYDSKYKDGSTALIIPAELPVETVASLKELAKRAFKAIDGSGLVRADF-F 298

Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
                 V+  E+N  PG TPVS++P +  +   S+ EL+
Sbjct: 299 VTAENNVYINEVNTMPGFTPVSMYPLLWQHTNVSYPELI 337


>gi|295106320|emb|CBL03863.1| D-alanine--D-alanine ligase [Gordonibacter pamelaeae 7-10-1-b]
          Length = 330

 Score =  132 bits (332), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 100/322 (31%), Positives = 158/322 (49%), Gaps = 38/322 (11%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG S ERE SL+SGK   +ALE+AG KV  +D    +   L   +PD+ ++ LHG
Sbjct: 5   VAVLMGGASFEREFSLASGKNVCAALEEAGHKVVPLDTTADLVPTLRTERPDVCYSALHG 64

Query: 61  NFGEDGLVQAILELLEIPY--THSGILASALSMDKMR-----SKQVVSSCGVPVCP-SIL 112
             GEDG +Q++LE L+IP+  + S +     + D M       + +     +   P  I 
Sbjct: 65  KHGEDGTIQSLLEFLDIPFVGSPSHVCHRTWNKDSMHYELATYRAITGDAPIASWPQGIY 124

Query: 113 VNRFTMDSQHLISP------------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160
           + R         +             P  +KP  GGS++G+  +     +   +L + S+
Sbjct: 125 LARDAFKDMGAATALDLVQERVIGGYPVAVKPAHGGSAMGVHRVDSVDELGEAILDALSF 184

Query: 161 NHGDQLLIEQYVDGIELTCGVMG---DA-SLDVTEIAVPKSDFYSYELKYSSLNSTH--- 213
           +  + ++IEQ+V+G+E+   V+G   DA +L   EI VPK  F+  E +       +   
Sbjct: 185 D--EAVVIEQWVEGVEMAVSVLGTGWDAYALPPVEI-VPKQGFFGTEARMEPGAVQYIAP 241

Query: 214 VLPAKIPLD------IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPG 267
           V PA +  D      I  E++R A   ++A   R ++R D ++D    +VF  E+NV PG
Sbjct: 242 VRPASLSDDEGDAQAIRAEIERAALEVYRAYNARDLARVDLIWDGAQARVF--EVNVSPG 299

Query: 268 MTPVSIFPEMAAYAGYSFRELL 289
           M   S+FP     AG S   +L
Sbjct: 300 MAERSLFPAACEAAGLSLSSVL 321


>gi|291085781|ref|ZP_06354046.2| D-alanine--D-alanine ligase A [Citrobacter youngae ATCC 29220]
 gi|291069833|gb|EFE07942.1| D-alanine--D-alanine ligase A [Citrobacter youngae ATCC 29220]
          Length = 375

 Score =  132 bits (332), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 92/346 (26%), Positives = 166/346 (47%), Gaps = 55/346 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR--------SVGLVL-----A 47
           + ++ GG S+E EVSL S K    A++   F V  + +D+        +   +L     A
Sbjct: 17  VGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGIDKQGQWHVSDASNYLLNSDDPA 76

Query: 48  H--LKP----------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
           H  L+P                            D+ F ++HG  GEDG +Q +L +  +
Sbjct: 77  HIALRPSATSLAQVPGKQEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 136

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVIK 131
           P+  S +L SA  MDK  +K+++   G+ + P I + R   ++      +  +  P  +K
Sbjct: 137 PFVGSDVLGSAACMDKDVTKRLLRDAGLNIAPFITLTRANRNNISFAEVESRLGLPLFVK 196

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  +  +      +  +  ++H  ++++EQ + G E+ C V+G+     + 
Sbjct: 197 PANQGSSVGVSKVTSEAQYNQAVALAFEFDH--KVVVEQGIKGREIECAVLGNDRPQAST 254

Query: 192 IA--VPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               V  SDFY+Y+ KY   N    V+PA I  +I  +++ +A  A+Q +GC G++R D 
Sbjct: 255 CGEIVLNSDFYAYDTKYIDDNGAKVVVPAAIAPEINDKIREIAIQAYQTLGCAGMARVD- 313

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           +F      V   EIN  PG T +S++P++   +G  + +L+  ++E
Sbjct: 314 VFLTAENDVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIE 359


>gi|319654687|ref|ZP_08008766.1| D-alanylalanine synthetase [Bacillus sp. 2_A_57_CT2]
 gi|317393603|gb|EFV74362.1| D-alanylalanine synthetase [Bacillus sp. 2_A_57_CT2]
          Length = 358

 Score =  132 bits (332), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 93/304 (30%), Positives = 156/304 (51%), Gaps = 30/304 (9%)

Query: 4   LMGGISSEREVSLSSGKACA-SALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62
           L G +SS +E+  S G+A   +AL    F+ +Q   D+           D+ F +LHG  
Sbjct: 54  LQGPVSSVKELEFSQGEALPPTALAPTLFQGAQ---DKG--------PFDVIFPLLHGPN 102

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-- 120
           GEDG VQ +LELL +PY  +G+LAS+  MDK+  K + +  G+P    +   R   ++  
Sbjct: 103 GEDGTVQGLLELLNLPYVGNGVLASSAGMDKVIMKNIFAQAGLPQVKYVWFIRSEWENET 162

Query: 121 -------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
                  +  +  P  +KP   GSS+GI        +     ++  ++   +++IE+ V 
Sbjct: 163 EAAYDQVERELGYPCFVKPANLGSSVGISKCMNRSELEEAFKEAFQFDR--KIIIEEGVT 220

Query: 174 GIELTCGVMGD--ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
             E+  GV+G+      V    VPK +FY Y+ KY   ++  ++PA+I    Y E++ +A
Sbjct: 221 AREIEAGVLGNDYPECSVAGEIVPKVEFYDYKAKYEDGDTALIIPAEISEIEYSELRDMA 280

Query: 232 FLAHQAIGCRGISRSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
             A +A+ C G+ R+DF    L+R  K++  E+N  PG TP S+FP +  + G  + +L+
Sbjct: 281 IKAFKALDCSGLVRADFF---LTREGKLYINEVNTMPGFTPFSMFPLLWKHTGVEYPQLI 337

Query: 290 LWMV 293
             +V
Sbjct: 338 ERLV 341


>gi|327404081|ref|YP_004344919.1| D-alanine--D-alanine ligase [Fluviicola taffensis DSM 16823]
 gi|327319589|gb|AEA44081.1| D-alanine--D-alanine ligase [Fluviicola taffensis DSM 16823]
          Length = 321

 Score =  132 bits (332), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 100/315 (31%), Positives = 156/315 (49%), Gaps = 42/315 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-------------------DRS 41
           + +  GG SSE E+SL S +         G++V  I V                     S
Sbjct: 4   VGLFCGGYSSEFEISLKSAQTIMDNFP-LGYEVVPIHVVEEGWFVPMNTEKLPFSIESMS 62

Query: 42  VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
             +     K D+    +HGN GE+G +QA+L++  +PY +S  LAS LS DK    Q ++
Sbjct: 63  YSINGKERKIDIGLIYIHGNPGENGKIQALLDIKGVPYVNSNALASELSFDKWYCNQFLA 122

Query: 102 SCGVPVCPSILVN---RFTMDSQHLISP---PYVIKPLKGGSSLGIIVIKK--DQSIPLD 153
             GVPV  S+ +N   +FT  +Q ++     P  +KP   GSS GI  + K  D  + LD
Sbjct: 123 RFGVPVAKSLFLNSPKKFT--NQEILDQLGLPCFVKPCDSGSSFGISKVSKASDLQVALD 180

Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSL 209
                ++  GD ++IE ++ G E+TCG+     G  +L +TEI V ++DF+ YE KY   
Sbjct: 181 ----KAFEEGDTIVIESFLKGTEVTCGIYRSTSGLVTLPLTEI-VTENDFFDYEAKYLG- 234

Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
            S  + PA+IP  I + V   +   +  +  + I+R DF+   +    + +E+N  PG +
Sbjct: 235 QSQEITPARIPDSIKELVWEQSKQVYSLLQLKSIARIDFML--VDDIPYVIEVNTTPGFS 292

Query: 270 PVSIFPEMAAYAGYS 284
             S+ P+M A AG S
Sbjct: 293 AASLVPQMLAEAGIS 307


>gi|331270461|ref|YP_004396953.1| D-alanine--D-alanine ligase [Clostridium botulinum BKT015925]
 gi|329127011|gb|AEB76956.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)
           [Clostridium botulinum BKT015925]
          Length = 343

 Score =  132 bits (332), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 80/264 (30%), Positives = 143/264 (54%), Gaps = 19/264 (7%)

Query: 45  VLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCG 104
           +L + + D+ F V+HG +GEDG +Q + +LL+IP    G+++SA+ MDK+ +K V+ + G
Sbjct: 77  ILFNREVDVVFPVMHGLYGEDGTIQGLCKLLDIPCVGPGVMSSAVCMDKVYTKYVLENFG 136

Query: 105 VPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
           +     ++V      +         ++ +     IKP   GSS+GI      + +   L 
Sbjct: 137 IKQADYVVVTAHDYKTIKEDILTKIENKLGYDVFIKPSNSGSSVGISKAHNREELEKGLS 196

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA-----VPKSDFYSYELKYSSLN 210
           ++  ++   ++L+E  ++  E+   V+G+   D  E A     VP ++FY YE KYS+  
Sbjct: 197 EALKFDR--KVLVETALNAREIEVAVLGN---DEPEAATPGEIVPANEFYDYEAKYSNAE 251

Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270
           S  +LPA +     ++V+ LA   ++ + C G+SR DFL D  + +V+  EIN  PG T 
Sbjct: 252 SKLLLPANLSEKKLEKVKELAIRIYKMLDCSGMSRVDFLVDKETEEVYLNEINTIPGFTK 311

Query: 271 VSIFPEMAAYAGYSFRELLLWMVE 294
           +S++P+M    G S+  L+  ++E
Sbjct: 312 ISMYPKMWQAEGKSYGNLISEIIE 335


>gi|225412310|ref|ZP_03761499.1| hypothetical protein CLOSTASPAR_05532 [Clostridium asparagiforme
           DSM 15981]
 gi|225042103|gb|EEG52349.1| hypothetical protein CLOSTASPAR_05532 [Clostridium asparagiforme
           DSM 15981]
          Length = 353

 Score =  132 bits (332), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 86/250 (34%), Positives = 133/250 (53%), Gaps = 15/250 (6%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV------ 105
           D+ F VLHG +GEDG VQ +LEL +IPY   G+LASA+SMDK+ +K +V + GV      
Sbjct: 95  DVVFPVLHGLYGEDGTVQGLLELAKIPYVGCGVLASAVSMDKLFTKIIVDNLGVRQAEYE 154

Query: 106 PVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
           PV    L +    T   +   S P  IKP   GSS G+   +  + +   LL+++   H 
Sbjct: 155 PVTREQLAHMEAVTARIEGHFSYPVFIKPSNAGSSRGVSKAENREELEAGLLEAA--RHD 212

Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK----SDFYSYELKYSSLNSTHVLPAKI 219
            ++L+E+ + G E+ C V G  +  V    V +    ++FY +E KY +  S  V   ++
Sbjct: 213 RKILVEEAIVGREVECAVFGGGAEAVVASGVGEILAAAEFYDFEAKYYNEESRTVTDPEL 272

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279
           P D  + +++ A    QA+   G++R DF F     +V + EIN  PG T +S++P +  
Sbjct: 273 PGDAAERIRQTAVSVFQAVDGYGLARVDF-FVTGDGEVVFNEINTLPGFTAISMYPMLWE 331

Query: 280 YAGYSFRELL 289
             G S  EL+
Sbjct: 332 ARGVSKEELV 341


>gi|150024748|ref|YP_001295574.1| D-alanyl-alanine synthetase A [Flavobacterium psychrophilum
           JIP02/86]
 gi|189083042|sp|A6GXD5|DDL_FLAPJ RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|149771289|emb|CAL42758.1| D-alanine--D-alanine ligase [Flavobacterium psychrophilum JIP02/86]
          Length = 328

 Score =  132 bits (332), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 94/316 (29%), Positives = 161/316 (50%), Gaps = 33/316 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-------------------DRS 41
           +AV+MGG S E  +SL SG+   + L+ + + + ++ +                   D S
Sbjct: 3   VAVVMGGYSDESVISLRSGQLILNNLDKSKYNIFEVHILLKDWSVVIEGEKYPINKADFS 62

Query: 42  VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
                   K D+A N +HG  GEDG +Q+  EL++IPYT      SAL+ +K  +  V++
Sbjct: 63  FTKNGVITKFDVAINTVHGTPGEDGHLQSYWELIDIPYTGCNFYQSALTFNKRDTLSVLT 122

Query: 102 SCGVPVCPSILVNRFTM----DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
              +P   SI + +  +    + +  +  P+ +KP + GSSLG  V K D    L+    
Sbjct: 123 KFNIPKAKSIYLRKGDVIDGNEIKKALGLPFFVKPNQSGSSLG--VSKVDALDQLEKALE 180

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMG----DASLDVTEIAVPKSDFYSYELKYSSLNSTH 213
            ++   +++LIE Y++G E++ GV+        L +TEI + ++DF+ YE KY    S  
Sbjct: 181 FAFAEDNEILIESYLNGTEVSVGVLNYKGQTKVLGITEI-LSQNDFFDYEAKYLG-KSEE 238

Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273
           + PA+I  +    V   A   + ++G  G SR+DF+   ++    ++EIN  PG++P SI
Sbjct: 239 ITPARISKEEEILVAESAKKIYNSLGMSGFSRTDFII--MNGIPHFIEINTNPGLSPQSI 296

Query: 274 FPEMAAYAGYSFRELL 289
           FP+ A +A     ++L
Sbjct: 297 FPQQAMFAKMDMPQML 312


>gi|270292368|ref|ZP_06198579.1| D-alanine--D-alanine ligase [Streptococcus sp. M143]
 gi|270278347|gb|EFA24193.1| D-alanine--D-alanine ligase [Streptococcus sp. M143]
          Length = 347

 Score =  132 bits (332), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 100/331 (30%), Positives = 161/331 (48%), Gaps = 43/331 (12%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKV----------------------------- 33
           +L GG S+EREVS+ S ++   A+    F V                             
Sbjct: 7   LLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDFIKTQEFSQTPGQEDRLMT 66

Query: 34  -SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
            + ID D+ +     + +  + F VLHG  GEDG VQ  LE+L++PY    IL+S+L+MD
Sbjct: 67  NATIDWDKKIAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLAMD 126

Query: 93  KMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           K+ +K+V+ S G+   P +       V     + +  ++ P   KP   GSS+GI   K 
Sbjct: 127 KITTKRVLESAGIAQVPYVAIVEGDDVTAKITEVEEKLTYPVFTKPSNMGSSVGI--SKS 184

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYE 203
           +    L      ++ +  ++L+EQ V+  E+  G++G+  +  T   E+ V    FY Y+
Sbjct: 185 ENQEELRQALELAFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVAFYDYD 243

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            KY     T  +PAKI  D+   ++R A  A +AIG  G+SR DF +     ++F  E+N
Sbjct: 244 AKYIDNKITMDIPAKISDDVVAVMRRNAETAFRAIGGLGLSRCDFFYTDKG-EIFLNELN 302

Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             PG T  S++P +    G S+ EL+  +V+
Sbjct: 303 TMPGFTQWSMYPLLWDNMGISYPELIERLVD 333


>gi|70732508|ref|YP_262271.1| D-alanyl-alanine synthetase A [Pseudomonas fluorescens Pf-5]
 gi|68346807|gb|AAY94413.1| D-alanine--D-alanine ligase [Pseudomonas fluorescens Pf-5]
          Length = 364

 Score =  132 bits (332), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 94/296 (31%), Positives = 155/296 (52%), Gaps = 30/296 (10%)

Query: 10  SEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ 69
           S RE+++  GKA            SQ  V+ S   +L H+  D+ F ++HG  GEDG +Q
Sbjct: 72  SNRELAVVPGKA------------SQQLVETSSQELLGHV--DVIFPIVHGTLGEDGCLQ 117

Query: 70  AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM------DSQHL 123
            +L + ++P+  S +L SA+ MDK  SK+++   G+ V P I + R T        ++  
Sbjct: 118 GLLRMADLPFVGSDVLGSAVCMDKDISKRLLRDAGLAVTPFITLTRATRARYGFARARET 177

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           +  P  +KP   GSS+G+  +  +      +  +  ++H  ++L+E  V G E+ C V+G
Sbjct: 178 LGLPLFVKPANQGSSVGVSKVDNEAEYEAAVELALGFDH--KVLVESAVRGREIECAVLG 235

Query: 184 D---ASLDVTEIAVPKSDFYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIG 239
           +    +    EI V    FYSY+ KY    +  VL PA I ++  + ++ LA  A Q +G
Sbjct: 236 NDQPIASGCGEIVVSNG-FYSYDSKYIDGEAAQVLVPADISIEHSERIRALAVEAFQVLG 294

Query: 240 CRGISRSD-FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           C G++R D FL D    +V   EIN  PG T +S++P++    G S+ EL+  ++E
Sbjct: 295 CSGLARVDVFLTD--EGEVLINEINSLPGFTRISMYPKLWQATGMSYSELVSRLIE 348


>gi|198244109|ref|YP_002214333.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|197938625|gb|ACH75958.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
          Length = 364

 Score =  132 bits (331), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 89/346 (25%), Positives = 167/346 (48%), Gaps = 55/346 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD--------------------- 39
           + ++ GG S+E EVSL S K    A++   F V  + +D                     
Sbjct: 6   VGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGIDKAGQWHVNDAENYLQNADDPA 65

Query: 40  ----RSVGLVLAHL--------------KP----DLAFNVLHGNFGEDGLVQAILELLEI 77
               R   + LA +              +P    D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  HIALRPSAISLAQVPGKHQHQLINAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVIK 131
           P+  S +L+SA  MDK  +K+++   G+ + P I + R    +      +  +  P  +K
Sbjct: 126 PFVGSDVLSSAACMDKDVAKRLLRDAGLNIAPFITLTRTNRHAFSFAEVESRLGLPLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  +  +      +  +  ++H  ++++EQ + G E+ C V+G+ +   + 
Sbjct: 186 PANQGSSVGVSKVANEAQYQQAVALAFEFDH--KVVVEQGIKGREIECAVLGNDNPQAST 243

Query: 192 IA--VPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               V  S+FY+Y+ KY   N    V+PA++P  +  +++ +A  A+Q +GC G++R D 
Sbjct: 244 CGEIVLNSEFYAYDTKYIDDNGAQVVVPAQLPSGVNDKIRAIAIQAYQTLGCAGMARVD- 302

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           +F     +V   EIN  PG T +S++P++   +G  + +L+  ++E
Sbjct: 303 VFLTADNEVVINEINTLPGFTNISMYPKLWQASGLGYTDLISRLIE 348


>gi|269218666|ref|ZP_06162520.1| D-alanine--D-alanine ligase [Actinomyces sp. oral taxon 848 str.
           F0332]
 gi|269211777|gb|EEZ78117.1| D-alanine--D-alanine ligase [Actinomyces sp. oral taxon 848 str.
           F0332]
          Length = 370

 Score =  132 bits (331), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 82/254 (32%), Positives = 133/254 (52%), Gaps = 19/254 (7%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+AF +LHG FGEDG +Q  LE+  +PY   G+ ASA  MDK   K V+ S G+ V P +
Sbjct: 105 DVAFPLLHGPFGEDGTIQGFLEMAGVPYVGCGVFASAAGMDKHFMKVVLESAGIAVAPYV 164

Query: 112 LV--NRFTMDSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
           LV   R+  +   +++        P  +KP + GSSLGI  + +     L+   +++   
Sbjct: 165 LVAPRRWRTEKGQILAEIAQKLTFPVFVKPARAGSSLGIGKVLEPGG--LERAIAAAQKV 222

Query: 163 GDQLLIEQYVDGIELTCGVM---GDASLDVT---EIAVPKSDFYSYELKYSSLNSTHV-L 215
             ++++EQ V G E+ C V+   GDA+   +   EI +  +D+Y +E KY      H+ +
Sbjct: 223 DPKVIVEQGVKGREVECAVLGGRGDAAPRTSILGEIVMDGTDWYDFETKYIQTEGFHMAV 282

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275
           PA +  D+  E +R+A    +A  C G++R DF       ++   E N  PG T  S++P
Sbjct: 283 PAPVEADVEAEARRIAARVFEAFDCEGMTRVDFFLTD-DGEILVNEHNTIPGFTEFSMYP 341

Query: 276 EMAAYAGYSFRELL 289
            +  + G  + EL+
Sbjct: 342 ILWEHTGIPYSELI 355


>gi|271499277|ref|YP_003332302.1| D-alanine/D-alanine ligase [Dickeya dadantii Ech586]
 gi|270342832|gb|ACZ75597.1| D-alanine/D-alanine ligase [Dickeya dadantii Ech586]
          Length = 366

 Score =  132 bits (331), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 92/347 (26%), Positives = 165/347 (47%), Gaps = 57/347 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------------------- 40
           + V+ GG SSE EVSL S K    A++   F V  + +D+                    
Sbjct: 6   VGVVFGGKSSEHEVSLQSAKNIVDAIDKTRFDVVLLGIDKQGEWHVNDASNYLLNADNPA 65

Query: 41  ---------SVGLVLAHL--------------KPDLAFNVLHGNFGEDGLVQAILELLEI 77
                    +V L+                  + D+ F ++HG  GEDG +Q +L +  I
Sbjct: 66  LIALNRSSQNVALIPGQTHHQLIDTASASALSQIDVIFPIVHGTLGEDGSLQGLLRMANI 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH-------LISPPYVI 130
           P+  S +L SA+SMDK  +K+++   G+ V P + + R    ++H        +  P  I
Sbjct: 126 PFVGSSVLGSAVSMDKDVTKRLLRDAGLQVAPFVTLTRANR-ARHPYDSVTAELGLPLFI 184

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD--ASLD 188
           KP   GSS+G+  ++        +  +  ++H  ++L+E  + G E+ C V+G+      
Sbjct: 185 KPANQGSSVGVSKVRNQAEFEHAVELAFRYDH--KVLVESAIVGREIECAVLGNDYPKAS 242

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           V    V   +FYSY+ KY + +   V +PA +  D+++ ++ +A  A QA+ C+G++R D
Sbjct: 243 VCGEIVLHDEFYSYDTKYINEDGAAVAIPAVMDDDVHQHIRDIALRAFQALECQGMARVD 302

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
               P  ++V   E+N  PG T +S++P++   +G  +  L+  ++E
Sbjct: 303 VFLTP-DQQVVVNEVNTLPGFTNISMYPKLWEASGLDYTSLITQLIE 348


>gi|168240194|ref|ZP_02665126.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|194451264|ref|YP_002044411.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|194409568|gb|ACF69787.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|205340288|gb|EDZ27052.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
          Length = 364

 Score =  132 bits (331), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 89/346 (25%), Positives = 167/346 (48%), Gaps = 55/346 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD--------------------- 39
           + ++ GG S+E EVSL S K    A++   F V  + +D                     
Sbjct: 6   VGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGIDKAGQWHVNDAENYLQNADDPA 65

Query: 40  ----RSVGLVLAHL--------------KP----DLAFNVLHGNFGEDGLVQAILELLEI 77
               R   + LA +              +P    D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  HIALRPSAISLAQVPGKHQHQLINAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVIK 131
           P+  S +L+SA  MDK  +K+++   G+ + P I + R    +      +  +  P  +K
Sbjct: 126 PFVGSDVLSSAACMDKDVAKRLLRDAGLNIAPFITLTRTNRHAFSFAEVESRLGLPLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  +  +      +  +  ++H  ++++EQ + G E+ C V+G+ +   + 
Sbjct: 186 PANQGSSVGVSKVANEAQYQQAVALAFEFDH--KVVVEQGIKGREIECAVLGNDNPQAST 243

Query: 192 IA--VPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               V  S+FY+Y+ KY   N    V+PA++P  +  +++ +A  A+Q +GC G++R D 
Sbjct: 244 CGEIVLNSEFYAYDTKYIDDNGAQVVVPAQLPSGVNDKIRAIAIQAYQTLGCAGMARVD- 302

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           +F     +V   EIN  PG T +S++P++   +G  + +L+  ++E
Sbjct: 303 VFLTADNEVVINEINTLPGFTNISMYPKLWQASGLGYTDLISRLIE 348


>gi|326622081|gb|EGE28426.1| D-alanylalanine synthetase [Salmonella enterica subsp. enterica
           serovar Dublin str. 3246]
          Length = 370

 Score =  132 bits (331), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 89/346 (25%), Positives = 168/346 (48%), Gaps = 55/346 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------A 47
           + ++ GG S+E EVSL S K    A++   F V  + +D++    +             A
Sbjct: 12  VGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGIDKAGQWHVNDAENYLQNADDPA 71

Query: 48  H--LKP----------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
           H  L+P                            D+ F ++HG  GEDG +Q +L +  +
Sbjct: 72  HIALRPSAISLAQVPGKHQHQLINAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 131

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVIK 131
           P+  S +L+SA  MDK  +K+++   G+ + P I + R    +      +  +  P  +K
Sbjct: 132 PFVGSDVLSSAACMDKDVAKRLLRDAGLNIAPFITLTRTNRHAFSFAEVESRLGLPLFVK 191

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  +  +      +  +  ++H  ++++EQ + G E+ C V+G+ +   + 
Sbjct: 192 PANQGSSVGVSKVANEAQYQQAVALAFEFDH--KVVVEQGIKGREIECAVLGNDNPQAST 249

Query: 192 IA--VPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               V  S+FY+Y+ KY   N    V+PA++P  +  +++ +A  A+Q +GC G++R D 
Sbjct: 250 CGEIVLNSEFYAYDTKYIDDNGAQVVVPAQLPSGVNDKIRAIAIQAYQTLGCAGMARVD- 308

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           +F     +V   EIN  PG T +S++P++   +G  + +L+  ++E
Sbjct: 309 VFLTADNEVVINEINTLPGFTNISMYPKLWQASGLGYTDLISRLIE 354


>gi|110804402|ref|YP_687922.1| D-alanyl-alanine synthetase A [Shigella flexneri 5 str. 8401]
 gi|110613950|gb|ABF02617.1| D-alanine-D-alanine ligase A [Shigella flexneri 5 str. 8401]
          Length = 346

 Score =  132 bits (331), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 76/255 (29%), Positives = 140/255 (54%), Gaps = 18/255 (7%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+ F ++HG  GEDG +Q +L +  +P+  S +LASA  MDK  +K+++   G+ + P I
Sbjct: 82  DVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFI 141

Query: 112 LVNRFTMDSQHLIS---------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
            + R    ++H IS          P  +KP   GSS+G+  +  ++   + +  +  ++H
Sbjct: 142 TLTRA---NRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDH 198

Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVTEIA--VPKSDFYSYELKYSSLNSTH-VLPAKI 219
             ++++EQ + G E+ C V+G+ +   +     V  SDFY+Y+ KY   +    V+PA I
Sbjct: 199 --KVIVEQGIKGREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAI 256

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279
             +I  +++ +A  A+Q +GC G++R D    P   +V   EIN  PG T +S++P++  
Sbjct: 257 APEINDKIRAIAVQAYQTLGCAGMARVDVFLTP-ENEVVINEINTLPGFTNISMYPKLWQ 315

Query: 280 YAGYSFRELLLWMVE 294
            +G  + +L+  ++E
Sbjct: 316 ASGLGYTDLITRLIE 330


>gi|307329821|ref|ZP_07608976.1| D-alanine/D-alanine ligase [Streptomyces violaceusniger Tu 4113]
 gi|306884550|gb|EFN15581.1| D-alanine/D-alanine ligase [Streptomyces violaceusniger Tu 4113]
          Length = 390

 Score =  132 bits (331), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 89/263 (33%), Positives = 136/263 (51%), Gaps = 23/263 (8%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+ F +LHG +GEDG +Q +LEL  +PY  +G+LASA+ MDK   K+V  S G+PV P  
Sbjct: 125 DVVFPMLHGPYGEDGTLQGLLELSGVPYVGAGVLASAVGMDKEYMKRVFVSFGLPVGPYE 184

Query: 112 LV------------NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
           ++             R  ++       P  +KP + GSS+GI   K +    LD     +
Sbjct: 185 VIRPREWQQEPSAARRRIVEFAAEHGWPLFVKPARAGSSIGI--TKVEDPADLDEAIEEA 242

Query: 160 WNHGDQLLIEQYVDGIELTCGVM-----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHV 214
             H  ++++E  + G E+ CGV+       ASL      V    FY +E KY   ++  +
Sbjct: 243 RRHDPKVIVEALLRGREIECGVLEYEDGPRASLPAEIPPVSSHAFYDFEAKYID-SAAGI 301

Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD-FLFDPLSRKVFWLEINVQPGMTPVSI 273
           +PA +  +  + VQ LA  A  A  C G+ R+D FL D  S +    EIN  PG TP+S+
Sbjct: 302 VPAPLTEEQTRRVQELAVAAFDAASCEGLVRADFFLLD--SGEFVINEINTMPGFTPISM 359

Query: 274 FPEMAAYAGYSFRELLLWMVEDA 296
           +P M   +G S+ EL+  +++ A
Sbjct: 360 YPRMWQESGVSYPELVDRLLQAA 382


>gi|227889052|ref|ZP_04006857.1| D-alanine-D-alanine ligase [Lactobacillus johnsonii ATCC 33200]
 gi|227850281|gb|EEJ60367.1| D-alanine-D-alanine ligase [Lactobacillus johnsonii ATCC 33200]
          Length = 375

 Score =  132 bits (331), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 79/260 (30%), Positives = 138/260 (53%), Gaps = 17/260 (6%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+ F ++HGN GEDG +Q +  +L+ P+    +LA+A++MDK  +K +    GVPV   I
Sbjct: 103 DVFFPIVHGNLGEDGCLQGLFRVLDKPFVGDDVLAAAVTMDKEMTKILAQRAGVPVAKWI 162

Query: 112 LVNRF--------TMDSQHLIS---PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160
            V RF         +D +++ S       +KP   GSS+G+  +  ++   + L  + ++
Sbjct: 163 AVKRFEYNDPDNEKLDYEYVASQLGSDLFVKPSNQGSSVGVSHVTNEKEYKVAL--AEAF 220

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDAS---LDVTEIAVPKSDFYSYELKY-SSLNSTHVLP 216
            + D++L+E+ V G E+   V+G+       V +I   K  FY+YE KY     ST  +P
Sbjct: 221 KYDDKVLVEETVHGTEVETAVLGNDKPIVAGVGQIINAKDSFYTYENKYDDDSTSTLEIP 280

Query: 217 AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPE 276
           AK+P  I + V++ A    QA  C G++R D +      +V   E+N  PG T +S++P+
Sbjct: 281 AKLPEGIVETVRKNALKVFQATECSGLARIDSMLRSEDNEVVLTEVNALPGFTNISMYPK 340

Query: 277 MAAYAGYSFRELLLWMVEDA 296
           +    G  + +L+  +++ A
Sbjct: 341 LFEEIGIPYTDLITKLIDYA 360


>gi|295426234|ref|ZP_06818895.1| D-alanine-D-alanine ligase A [Lactobacillus amylolyticus DSM 11664]
 gi|295064079|gb|EFG55026.1| D-alanine-D-alanine ligase A [Lactobacillus amylolyticus DSM 11664]
          Length = 360

 Score =  132 bits (331), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 102/341 (29%), Positives = 164/341 (48%), Gaps = 51/341 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI---------DVDRSVGLV------ 45
           + ++ GG SSE EVS+ SG    +A++   F V  I         D   S  ++      
Sbjct: 7   VGLIFGGNSSEYEVSIVSGHNIYNAIDKDKFDVHPIWITNDGYFADEKESFKVLKDPKYQ 66

Query: 46  ---------------LAHL-KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
                          LA+L + D+ F ++HGN GEDG +Q +  +L+ P+    ILA+A+
Sbjct: 67  VKNPHKVTNISNLIELANLPEIDIFFPIVHGNLGEDGSLQGLFRILDKPFVGDDILAAAV 126

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPY-----------VIKPLKGGSS 138
           +MDK  +K +    GVPV   I V R   D ++     Y            +KP   GSS
Sbjct: 127 TMDKEFTKILAQRVGVPVADWIAVKRRDYDDKNSDKLNYDKVAEKLGKDMFVKPSNQGSS 186

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS---LDVTEIAVP 195
           +G+  +         L    ++ + D++L+E+ V G E+   V+G+ +     V +I   
Sbjct: 187 VGVSHVTNADEYKKAL--DEAFKYDDKVLVEETVPGTEVETAVLGNDNPIVSGVGQIINA 244

Query: 196 KSDFYSYELKYSSLNSTHVL--PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
              +YSYE KY   NST  L  PA++P  I ++V+  A   +QA  C G++R D +  P 
Sbjct: 245 AGSWYSYENKYDD-NSTSKLQIPAELPNRIVEKVRSNALKVYQATECSGMARIDSMLTP- 302

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             KV   E+N  PG T +S++P++   AG  + EL+  ++E
Sbjct: 303 DGKVVLTEVNALPGFTNISMYPKLFEAAGIPYTELITRLIE 343


>gi|326626726|gb|EGE33069.1| D-alanylalanine synthetase [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 9]
          Length = 370

 Score =  132 bits (331), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 89/346 (25%), Positives = 168/346 (48%), Gaps = 55/346 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------A 47
           + ++ GG S+E EVSL S K    A++   F V  + +D++    +             A
Sbjct: 12  VGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGIDKAGQWHVNDAENYLQNADDPA 71

Query: 48  H--LKP----------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
           H  L+P                            D+ F ++HG  GEDG +Q +L +  +
Sbjct: 72  HIALRPSAISLAQVPGKHQHQLINAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 131

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVIK 131
           P+  S +L+SA  MDK  +K+++   G+ + P I + R    +      +  +  P  +K
Sbjct: 132 PFVGSDVLSSAACMDKDIAKRLLRDAGLNIAPFITLTRTNRHAFSFAEVESRLGLPLFVK 191

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  +  +      +  +  ++H  ++++EQ + G E+ C V+G+ +   + 
Sbjct: 192 PANQGSSVGVSKVANEAQYQQAVALAFEFDH--KVVVEQGIKGREIECAVLGNDNPQAST 249

Query: 192 IA--VPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               V  S+FY+Y+ KY   N    V+PA++P  +  +++ +A  A+Q +GC G++R D 
Sbjct: 250 CGEIVLNSEFYAYDTKYIDDNGAQVVVPAQLPSGVNDKIRAIAIQAYQTLGCAGMARVD- 308

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           +F     +V   EIN  PG T +S++P++   +G  + +L+  ++E
Sbjct: 309 VFLTADNEVVINEINTLPGFTNISMYPKLWQASGLGYTDLISRLIE 354


>gi|322388818|ref|ZP_08062415.1| D-alanine-D-alanine ligase [Streptococcus infantis ATCC 700779]
 gi|321140437|gb|EFX35945.1| D-alanine-D-alanine ligase [Streptococcus infantis ATCC 700779]
          Length = 347

 Score =  132 bits (331), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 103/332 (31%), Positives = 161/332 (48%), Gaps = 45/332 (13%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKV----------------------------- 33
           +L GG S+EREVS+ S ++   A+    F V                             
Sbjct: 7   LLYGGRSAEREVSVLSAESVMRAVNYDRFAVKTFFISQSGDFIKTQEFTQTPSQDERLMT 66

Query: 34  -SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
              ID D+ +     + +  + F VLHG  GEDG VQ  LE+L++PY    IL+S+L+MD
Sbjct: 67  NETIDWDKKIAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLAMD 126

Query: 93  KMRSKQVVSSCGVPVCPSI-------LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145
           K+ +K+V+ S G+   P +       L ++     + L  P +  KP   GSS+GI   K
Sbjct: 127 KITTKRVLESAGIAQVPYVAIVEGDDLASKIAEVEEKLRYPVFT-KPSNMGSSVGI--SK 183

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSY 202
            +    L      ++ +  ++L+EQ V+  E+  G++G+  +  T   E+ V    FY Y
Sbjct: 184 SENKEELHQALELAFKYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVAFYDY 242

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
           E KY     T  +PAKI  D+   +++ A  A +AIG  G+SR DF +     +VF  E+
Sbjct: 243 EAKYIDNKITMDIPAKISDDVVAVMRKNAEAAFRAIGGLGLSRCDFFYTDKG-EVFLNEL 301

Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           N  PG T  S++P +    G S+ EL+  +VE
Sbjct: 302 NTMPGFTQWSMYPLLWDNMGISYPELIERLVE 333


>gi|193214070|ref|YP_001995269.1| D-alanine/D-alanine ligase [Chloroherpeton thalassium ATCC 35110]
 gi|229463741|sp|B3QU24|DDL_CHLT3 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|193087547|gb|ACF12822.1| D-alanine/D-alanine ligase [Chloroherpeton thalassium ATCC 35110]
          Length = 366

 Score =  132 bits (331), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 97/349 (27%), Positives = 170/349 (48%), Gaps = 57/349 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLA------------- 47
           +A+L GG SSE E+S+ S ++ A+AL+   +K+  I + ++   + A             
Sbjct: 6   VALLFGGRSSEHEISVISARSIANALDKTKYKIQPIYITKAGKWLGAEASRKILAMDFES 65

Query: 48  ----------HL---------------------KPDLAFNVLHGNFGEDGLVQAILELLE 76
                     HL                     K D+AF VLHG +GEDG VQ +LE+ +
Sbjct: 66  AIKSPTKKEIHLIEKEIVLLCQNSQFRFDFRTAKIDVAFPVLHGPYGEDGTVQGLLEMFD 125

Query: 77  IPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--SILVNRFTMDSQHLISP-------P 127
           + Y  SG+LASA++MDK  +K      G+ V    + L   F  +   +++        P
Sbjct: 126 VAYVGSGVLASAITMDKAVAKICFEHAGLQVGEYLAFLRREFEENRGSVVARAEKKLRYP 185

Query: 128 YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL 187
             +KP   GSS+GI        +   +  + +++   + LIE+ ++  E+   V+G+   
Sbjct: 186 MFVKPANMGSSVGISKAHNRNELIEAIELALAYDR--KFLIEKAINAREMEVAVLGNDEP 243

Query: 188 DVTEIA--VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
             + +   VP ++FY Y+ KY   +S  ++PA+I      +++  A  A  A  C G++R
Sbjct: 244 IASAVGEVVPCNEFYDYDAKYVKGSSEVIIPAQISEAFAGKLKAAALNAFVAADCEGMAR 303

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            DFL +  + +++  EIN  PG T +S++P++ A  G S+ EL+  ++E
Sbjct: 304 VDFLVEKETNEIYINEINSIPGFTSISMYPKLFAQVGISYTELINRLIE 352


>gi|332363453|gb|EGJ41236.1| D-alanine-D-alanine ligase [Streptococcus sanguinis SK355]
          Length = 353

 Score =  132 bits (331), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 98/330 (29%), Positives = 163/330 (49%), Gaps = 43/330 (13%)

Query: 3   VLMGGISSEREVSLSSGKACASAL-------------EDAGFKVSQ-------------- 35
           +L GG S+EREVS+ S ++   A+             +D  F  +Q              
Sbjct: 13  LLYGGRSAEREVSVLSAESVMRAVNYDRFSVKTYFITKDGDFIQTQEFEATPAADEKLMT 72

Query: 36  ---IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
              +D+ R +     +    + F VLHG  GEDG +Q  LE+L++PY    IL+S+L+MD
Sbjct: 73  NATVDMSRKIKPSDIYEDGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNILSSSLAMD 132

Query: 93  KMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           K+ +K+V+ S G+   P +       V +   + +  ++ P   KP   GSS+GI   K 
Sbjct: 133 KITTKRVLESAGISQVPYVALVDGEDVEQKIQEIEEKLTYPVFTKPSNMGSSVGI--SKS 190

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYE 203
           +    L      ++ +  ++L+EQ V   E+  G++G+  +  T   E+ V    FY YE
Sbjct: 191 ENQAELRASLDLAFKYDSRVLVEQGVTAREIEVGLLGNVDVKSTLPGEV-VKDVAFYDYE 249

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            KY     T  +PAKIP ++   +++ A  A +A+GC G+SR DF +     +VF  E+N
Sbjct: 250 AKYIDNKITMDIPAKIPEEVVSLMRQNAEAAFRALGCLGLSRCDFFYAE-DGQVFLNELN 308

Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
             PG T  S++P +    G ++ +L+  +V
Sbjct: 309 TMPGFTQWSMYPLLWENMGLAYPDLIEKLV 338


>gi|42518194|ref|NP_964124.1| D-alanine-D-alanine ligase [Lactobacillus johnsonii NCC 533]
 gi|81832312|sp|Q74LS5|DDL_LACJO RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|41582478|gb|AAS08090.1| D-alanine-D-alanine ligase [Lactobacillus johnsonii NCC 533]
          Length = 361

 Score =  132 bits (331), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 78/258 (30%), Positives = 137/258 (53%), Gaps = 17/258 (6%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+ F ++HGN GEDG +Q +  +L+ P+    +LA+A++MDK  +K +    GVPV   I
Sbjct: 89  DVFFPIVHGNLGEDGCLQGLFRVLDKPFVGDDVLAAAVTMDKEMTKILAQRAGVPVAKWI 148

Query: 112 LVNRF--------TMDSQHLIS---PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160
            V RF         +D +++ S       +KP   GSS+G+  +  ++   + L  + ++
Sbjct: 149 AVKRFEYNDPDNEKLDYEYVASQLGSDLFVKPSNQGSSVGVSHVTNEKEYKVAL--AEAF 206

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDAS---LDVTEIAVPKSDFYSYELKY-SSLNSTHVLP 216
            + D++L+E+ V G E+   V+G+       V +I   K  FY+YE KY     ST  +P
Sbjct: 207 KYDDKVLVEETVHGTEVETAVLGNDKPIVAGVGQIINAKDSFYTYENKYDDDSTSTLEIP 266

Query: 217 AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPE 276
           AK+P  I + V++ A    QA  C G++R D +      +V   E+N  PG T +S++P+
Sbjct: 267 AKLPEGIVETVRKNALKVFQATECSGLARIDSMLRSEDNEVVLTEVNALPGFTNISMYPK 326

Query: 277 MAAYAGYSFRELLLWMVE 294
           +    G  + +L+  +++
Sbjct: 327 LFEEIGIPYTDLITKLID 344


>gi|197261642|ref|ZP_03161716.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|197239897|gb|EDY22517.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
          Length = 364

 Score =  132 bits (331), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 90/346 (26%), Positives = 167/346 (48%), Gaps = 55/346 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------A 47
           + ++ GG S+E EVSL S K    A++   F V  + +D++    +             A
Sbjct: 6   VGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGIDKAGQWHVNDAENYLQNADDPA 65

Query: 48  H--LKP----------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
           H  L+P                            D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  HIALRPSAISLAQVPGKHQHQLINAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVIK 131
           P+  S +L+SA  MDK  +K+++   G+ + P I + R    +      +  +  P  +K
Sbjct: 126 PFVGSDVLSSAACMDKDVAKRLLRDAGLNIAPFITLTRTNRHAFSFAEVESRLGLPLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  +  +      +  +  ++H  ++++EQ + G E+ C V+G+ +   + 
Sbjct: 186 PANQGSSVGVSKVANEAQYQQAVALAFEFDH--KVVVEQGIKGREIECAVLGNDNPQAST 243

Query: 192 IA--VPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               V  S FY+Y+ KY   N    V+PA+IP  +  +++ +A  A+Q +GC G++R D 
Sbjct: 244 CGEIVLNSGFYAYDTKYIDDNGAQVVVPAQIPSGVNDKIRAIAIQAYQTLGCAGMARVD- 302

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           +F     +V   EIN  PG T +S++P++   +G  + +L+  ++E
Sbjct: 303 VFLTADNEVVINEINTLPGFTNISMYPKLWQASGLGYTDLISRLIE 348


>gi|226365967|ref|YP_002783750.1| D-alanyl-alanine synthetase A [Rhodococcus opacus B4]
 gi|254767736|sp|C1B2N8|DDL_RHOOB RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|226244457|dbj|BAH54805.1| D-alanine--D-alanine ligase [Rhodococcus opacus B4]
          Length = 368

 Score =  132 bits (331), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 86/272 (31%), Positives = 143/272 (52%), Gaps = 20/272 (7%)

Query: 39  DRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQ 98
           D   G +LA +  D+ F VLHG +GEDG +Q +LEL  +PY   G+LASA  MDK  +K+
Sbjct: 95  DGEAGKILASV--DVVFPVLHGAYGEDGTIQGLLELAGVPYVGPGVLASAAGMDKEFTKK 152

Query: 99  VVSSCGVPVCPSILVN----RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154
           ++++ G+P+   +++       T + +  +  P  +KP +GGSS+GI  +   +   LD 
Sbjct: 153 LLAAEGLPIGFQVVLRPGTATLTDEQRSRLHLPVFVKPARGGSSIGITRVA--EWAALDD 210

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVM----GDASLDV-TEIAVPKS-----DFYSYEL 204
             + +  H  ++++E  + G E+ CGV+    GD    V  EI +P+       FY ++ 
Sbjct: 211 AIAHARRHDPKVIVESGIAGREVECGVLEFPDGDVRASVIAEIRMPEGADDDEAFYDFDS 270

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           KY        +PAK+   +  E++ LA  A  A+ C+G++R DF        +   EIN 
Sbjct: 271 KYLDDVCEFDVPAKLEDSVSDEIRALAVRAFSALDCQGLARVDFFVTEDGPVIN--EINT 328

Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            PG T +S++P M    G  +  L+  +V+ A
Sbjct: 329 MPGFTSISMYPRMWDAVGVDYGTLVSTLVDTA 360


>gi|205351693|ref|YP_002225494.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|207855862|ref|YP_002242513.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|205271474|emb|CAR36291.1| D-alanine:D-alanine ligase A [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|206707665|emb|CAR31949.1| D-alanine:D-alanine ligase A [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
          Length = 364

 Score =  132 bits (331), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 89/346 (25%), Positives = 167/346 (48%), Gaps = 55/346 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD--------------------- 39
           + ++ GG S+E EVSL S K    A++   F V  + +D                     
Sbjct: 6   VGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGIDKAGQWHVNDAENYLQNADDPA 65

Query: 40  ----RSVGLVLAHL--------------KP----DLAFNVLHGNFGEDGLVQAILELLEI 77
               R   + LA +              +P    D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  HIALRPSAISLAQVPGKHQHQLINAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVIK 131
           P+  S +L+SA  MDK  +K+++   G+ + P I + R    +      +  +  P  +K
Sbjct: 126 PFVGSDVLSSAACMDKDIAKRLLRDAGLNIAPFITLTRTNRHAFSFAEVESRLGLPLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  +  +      +  +  ++H  ++++EQ + G E+ C V+G+ +   + 
Sbjct: 186 PANQGSSVGVSKVANEAQYQQAVALAFEFDH--KVVVEQGIKGREIECAVLGNDNPQAST 243

Query: 192 IA--VPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               V  S+FY+Y+ KY   N    V+PA++P  +  +++ +A  A+Q +GC G++R D 
Sbjct: 244 CGEIVLNSEFYAYDTKYIDDNGAQVVVPAQLPSGVNDKIRAIAIQAYQTLGCAGMARVD- 302

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           +F     +V   EIN  PG T +S++P++   +G  + +L+  ++E
Sbjct: 303 VFLTADNEVVINEINTLPGFTNISMYPKLWQASGLGYTDLISRLIE 348


>gi|309777767|ref|ZP_07672715.1| D-alanine--D-alanine ligase [Erysipelotrichaceae bacterium 3_1_53]
 gi|308914451|gb|EFP60243.1| D-alanine--D-alanine ligase [Erysipelotrichaceae bacterium 3_1_53]
          Length = 354

 Score =  131 bits (330), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 79/262 (30%), Positives = 128/262 (48%), Gaps = 17/262 (6%)

Query: 45  VLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCG 104
               ++ D  F +LHG  GEDG +Q + EL  IPY   G ++SA+ MDK  +  V+   G
Sbjct: 92  TFTRMEVDCIFPILHGKNGEDGTIQGLFELSGIPYVGCGHMSSAICMDKEMAHIVMEHAG 151

Query: 105 VPVCPSILV--------NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
           +   P + V             D++  +  P  IKP   GSS GI  ++        +  
Sbjct: 152 ISCAPFVCVYEQDDLDYRAVYEDAKEKLGLPIFIKPANAGSSFGIHKMESFDGFEEAMKD 211

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGD-----ASLDVTEIAVPKSDFYSYELKYSSLNS 211
           +   +   ++++E  ++G E+ C VMG+      S+D  E A P   F+ YE KY  ++S
Sbjct: 212 AFYHDGKGKVILETTIEGFEIGCAVMGNKELFAGSVDEIETAAP---FFDYEGKYEMVDS 268

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271
               PA+I  +++ + + +A  A+ A+ C+G++R D    P   K+   E+N  PG T  
Sbjct: 269 HIYCPARISKELFAQAREIAKKAYCAMNCKGMTRVDMFVTP-DEKIILNEVNTIPGFTDT 327

Query: 272 SIFPEMAAYAGYSFRELLLWMV 293
           S +P M   AG  F EL+  +V
Sbjct: 328 SRYPTMMKEAGIPFPELIDRLV 349


>gi|329666505|gb|AEB92453.1| D-alanine-D-alanine ligase A [Lactobacillus johnsonii DPC 6026]
          Length = 361

 Score =  131 bits (330), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 78/258 (30%), Positives = 137/258 (53%), Gaps = 17/258 (6%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+ F ++HGN GEDG +Q +  +L+ P+    +LA+A++MDK  +K +    GVPV   I
Sbjct: 89  DVFFPIVHGNLGEDGCLQGLFRVLDKPFVGDDVLAAAVTMDKEMTKILAQRAGVPVAKWI 148

Query: 112 LVNRF--------TMDSQHLIS---PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160
            V RF         +D +++ S       +KP   GSS+G+  +  ++   + L  + ++
Sbjct: 149 AVKRFEYNDPDNEKLDYEYVASQLGSDLFVKPSNQGSSVGVSHVTNEKEYKVAL--AEAF 206

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDAS---LDVTEIAVPKSDFYSYELKY-SSLNSTHVLP 216
            + D++L+E+ V G E+   V+G+       V +I   K  FY+YE KY     ST  +P
Sbjct: 207 KYDDKVLVEETVHGTEVETAVLGNDKPIVAGVGQIINAKDSFYTYENKYDDDSTSTLEIP 266

Query: 217 AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPE 276
           AK+P  I + V++ A    QA  C G++R D +      +V   E+N  PG T +S++P+
Sbjct: 267 AKLPEGIVETVRKNALKVFQATECSGLARIDSMLRSEDNEVVLTEVNALPGFTNISMYPK 326

Query: 277 MAAYAGYSFRELLLWMVE 294
           +    G  + +L+  +++
Sbjct: 327 LFEEIGIPYTDLITKLID 344


>gi|268318672|ref|YP_003292328.1| D-alanine-D-alanine ligase A [Lactobacillus johnsonii FI9785]
 gi|262397047|emb|CAX66061.1| D-alanine-D-alanine ligase A [Lactobacillus johnsonii FI9785]
          Length = 361

 Score =  131 bits (330), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 78/258 (30%), Positives = 137/258 (53%), Gaps = 17/258 (6%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+ F ++HGN GEDG +Q +  +L+ P+    +LA+A++MDK  +K +    GVPV   I
Sbjct: 89  DVFFPIVHGNLGEDGCLQGLFRVLDKPFVGDDVLAAAVTMDKEMTKILAQRAGVPVAKWI 148

Query: 112 LVNRF--------TMDSQHLIS---PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160
            V RF         +D +++ S       +KP   GSS+G+  +  ++   + L  + ++
Sbjct: 149 AVKRFEYNDPDNEKLDYEYVASQLGSDLFVKPSNQGSSVGVSHVTNEKEYKVAL--AEAF 206

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDAS---LDVTEIAVPKSDFYSYELKY-SSLNSTHVLP 216
            + D++L+E+ V G E+   V+G+       V +I   K  FY+YE KY     ST  +P
Sbjct: 207 KYDDKVLVEETVHGTEVETAVLGNDKPIVAGVGQIINAKDSFYTYENKYDDDSTSTLEIP 266

Query: 217 AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPE 276
           AK+P  I + V++ A    QA  C G++R D +      +V   E+N  PG T +S++P+
Sbjct: 267 AKLPEGIVETVRKNALKVFQATECSGLARIDSMLRSEDNEVVLTEVNALPGFTNISMYPK 326

Query: 277 MAAYAGYSFRELLLWMVE 294
           +    G  + +L+  +++
Sbjct: 327 LFEEIGIPYTDLITKLID 344


>gi|257867515|ref|ZP_05647168.1| ligase [Enterococcus casseliflavus EC30]
 gi|257873844|ref|ZP_05653497.1| ligase [Enterococcus casseliflavus EC10]
 gi|161779858|gb|ABX79418.1| VanC2/3 [Enterococcus casseliflavus]
 gi|257801571|gb|EEV30501.1| ligase [Enterococcus casseliflavus EC30]
 gi|257808008|gb|EEV36830.1| ligase [Enterococcus casseliflavus EC10]
          Length = 350

 Score =  131 bits (330), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 80/250 (32%), Positives = 134/250 (53%), Gaps = 13/250 (5%)

Query: 49  LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
           L PD+ F ++HG +GEDG +Q + EL+++PY   G+  SAL M+K    Q  ++ GV   
Sbjct: 93  LVPDVLFPIMHGKYGEDGSIQGLFELMKLPYVGCGVAGSALCMNKWLLHQAAAAIGVQSA 152

Query: 109 PSILVNRFTMDSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN 161
           P+IL+     + Q  I         P   KP + GSS GI  +   + I   L    ++ 
Sbjct: 153 PTILLTN-QANQQEQIEAFIQTHGFPVFFKPNEAGSSKGITKVTCVEEIASAL--KEAFT 209

Query: 162 HGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK--SDFYSYELKYSSLNSTHVLPAKI 219
           +   +L+++ + G+E+ CG++G+ SL V           F+ +E KY  +++   +PA +
Sbjct: 210 YCSAVLLQKNIVGVEIGCGILGNDSLTVGACDTISLVDGFFDFEEKYQLISAKITVPAPL 269

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279
           P  I  +V+  A L ++++G +G++R DF F     +++  EIN  PG T  S +P M A
Sbjct: 270 PETIETKVKEQAQLLYRSLGLKGLARIDF-FVTDQGELYLNEINTMPGFTSHSRYPAMMA 328

Query: 280 YAGYSFRELL 289
             G S++ELL
Sbjct: 329 AVGLSYQELL 338


>gi|323343929|ref|ZP_08084156.1| D-alanine-D-alanine ligase [Prevotella oralis ATCC 33269]
 gi|323095748|gb|EFZ38322.1| D-alanine-D-alanine ligase [Prevotella oralis ATCC 33269]
          Length = 333

 Score =  131 bits (330), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 96/329 (29%), Positives = 157/329 (47%), Gaps = 39/329 (11%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-----------------DRSVG 43
           +A++ GG SSE +VSL S +   S  +   + V  +DV                 DR+  
Sbjct: 8   IAIVCGGDSSEHDVSLRSAQGLYSFFDKERYNVYIVDVKGVDWHVNFENGEVASIDRNDF 67

Query: 44  LVLAHLKP---DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
             +   K    D A+  +HG  GE+G++Q   EL+ +PY+ SG+L  A++ DK      +
Sbjct: 68  SFVKDGKAVIFDYAYITIHGTPGENGIMQGYFELIHLPYSTSGVLVEAMTFDKYVLNNYL 127

Query: 101 SSCGVPVCPSILVNRFTMDS------QHLISPPYVIKPLKGGSSLGIIVIKK-DQSIPLD 153
            S G+ V PS+L+ R   D       +  I  P  +KP   GSS G+  +K  DQ  P  
Sbjct: 128 RSFGINVAPSLLLRRGEEDKYSEEYIEKTIGMPCFVKPAADGSSFGVSKVKNADQLAPAL 187

Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV----TEIAVPKSDFYSYELKYSSL 209
            +   ++   D ++IE +++G E++ G        V    TE+ V  ++F+ Y+ KY+  
Sbjct: 188 RV---AFMESDDVMIEAFMEGTEISVGCYKTKKKSVVFPATEV-VTTNEFFDYDAKYNG- 242

Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF---DPLSRKVFWLEINVQP 266
               + PA+I  +  K+V       +  + C GI R D++    D  + K+  LEIN  P
Sbjct: 243 QVQEITPARISTETAKKVAEETSKIYDILHCNGIIRIDYIITKDDAGNDKINMLEINTTP 302

Query: 267 GMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           GMT  S  P+    AG   +++L  +VE+
Sbjct: 303 GMTHTSFIPQQVHAAGLDIKDVLTDIVEN 331


>gi|260463766|ref|ZP_05811963.1| D-alanine/D-alanine ligase [Mesorhizobium opportunistum WSM2075]
 gi|259030363|gb|EEW31642.1| D-alanine/D-alanine ligase [Mesorhizobium opportunistum WSM2075]
          Length = 368

 Score =  131 bits (330), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 88/273 (32%), Positives = 144/273 (52%), Gaps = 19/273 (6%)

Query: 40  RSVGLVLAHLKPDLA-----FNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKM 94
           R V +  A ++PDL+     F VLHG FGEDG VQ   E+ ++ Y   GILASA +MDK 
Sbjct: 83  RLVAVPQAGVRPDLSPVDVVFPVLHGPFGEDGSVQGYAEVADVAYVGCGILASAAAMDKD 142

Query: 95  RSKQVVSSCGVPVCPSILVNRFTMDSQHLISP----PYVIKPLKGGSSLGIIVIKKDQSI 150
            +K+++   G+ V  S+ V R  + S   I+     P+  KP + GSS G+  +K     
Sbjct: 143 VAKRLMREAGLAVARSVTVLRGDVCSFQEIAGALGLPFFAKPARQGSSFGVSKVKDRDG- 201

Query: 151 PLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM--GDASLDVTE----IAVPKSDFYSYEL 204
             +    ++  +  ++LIE++V+G E+ C V+   D SL V+     I   K  FY+YE 
Sbjct: 202 -FEQAVETALRYDSKVLIEEFVEGREIECSVLQRADGSLTVSLPGEIIPAGKHGFYTYEA 260

Query: 205 KYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
           KY   +   V +PA +P  +  + + +A  A +A+GC  ++R DF F      +   E+N
Sbjct: 261 KYFDADGAVVKVPADVPAGVAGKAKEMAAQAFRALGCEAMARVDF-FLRADGSLLVNEVN 319

Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             PG T +S++ +  A  G  + +++  ++E A
Sbjct: 320 TLPGFTDISMYAKALAAIGIGYSQVIDVLIEHA 352


>gi|319951163|ref|ZP_08025008.1| D-alanyl-alanine synthetase A [Dietzia cinnamea P4]
 gi|319435179|gb|EFV90454.1| D-alanyl-alanine synthetase A [Dietzia cinnamea P4]
          Length = 368

 Score =  131 bits (330), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 81/265 (30%), Positives = 136/265 (51%), Gaps = 24/265 (9%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+ F V+HG   EDG +Q +LEL  IPY   G+ ASA  MDK  +K V+ + G+P+   +
Sbjct: 104 DVVFPVMHGTHAEDGTIQGLLELSGIPYVGPGVFASAAGMDKEFTKVVLGAAGLPIGRQV 163

Query: 112 LVNRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL 167
           ++   T       +  +  P  +KP +GGSS+GI   K  ++  LD   + +    ++++
Sbjct: 164 VLRPGTATLSPADRDRLGLPLFVKPARGGSSIGI--TKVSRAADLDAAIAEARRFDEKVI 221

Query: 168 IEQYVDGIELTCGVMG--DASLDVT---EIAVPKSD-----------FYSYELKYSSLNS 211
           +E  + G E+ CGV+   D  ++ +   E+ +P              FY ++ KY    +
Sbjct: 222 VEAAIVGREIECGVLEYPDGRVEASLPAELHIPGEPTGVEGETEGDAFYDFDTKYLDDVT 281

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271
           T  LPA +P +  ++++ LA  A  A+  RG+SR DF     +      E+N  PG TP+
Sbjct: 282 TFDLPADLPAEQTEQLRTLAVEAFHALDARGLSRVDFFV--TAEGPVINEVNTMPGFTPI 339

Query: 272 SIFPEMAAYAGYSFRELLLWMVEDA 296
           S++P+M A  G  +  LL  ++  A
Sbjct: 340 SMYPQMWAATGVDYESLLDTLIRTA 364


>gi|320546374|ref|ZP_08040690.1| D-alanine-D-alanine ligase [Streptococcus equinus ATCC 9812]
 gi|320448984|gb|EFW89711.1| D-alanine-D-alanine ligase [Streptococcus equinus ATCC 9812]
          Length = 348

 Score =  131 bits (330), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 98/333 (29%), Positives = 160/333 (48%), Gaps = 43/333 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           + +L GG S+EREVS+ S ++   A+    F V    + +S   +               
Sbjct: 6   LVLLYGGRSAEREVSVLSAESVMRAINYDKFFVKTYFITKSGDFIKTQEFSSKPADDEKL 65

Query: 49  -----------LKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
                      +KP        + F VLHG  GEDG +Q  LE+L++PY  + IL+S+++
Sbjct: 66  MTNDTVVESQKIKPSDIYEEGAVVFPVLHGPMGEDGSIQGFLEILKMPYVGTNILSSSVA 125

Query: 91  MDKMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
           MDK+ +K V+ S GVP+   +       + +   +    ++ P  +KP   GSS+GI   
Sbjct: 126 MDKISTKHVLESAGVPLVAYVTYVEGADLEKTVAEVNEKLTYPVFVKPANMGSSVGI--S 183

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYS 201
           K +    L      +  +  ++LIE  V+  E+  G++G+A +  T   E+ V    FY 
Sbjct: 184 KAEGEAALRTAIDFALKYDSRILIETGVNAREIEVGILGNADVKTTLPGEV-VKDVAFYD 242

Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
           Y+ KY     T  +PA I  DI +E++  A  A +AIG  G+SR DF        V+  E
Sbjct: 243 YDAKYIDNKITMDIPAHIDSDIMEEMRGYATTAFRAIGGCGLSRCDFFLTE-DGHVYLNE 301

Query: 262 INVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           +N  PG T  S++P +    G ++ +L+  +VE
Sbjct: 302 LNTMPGFTQWSMYPLLWENMGLAYTDLVEKLVE 334


>gi|327475201|gb|AEA77195.1| D-alanyl-alanine synthetase A [Bacillus aquimaris]
          Length = 357

 Score =  131 bits (330), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 95/340 (27%), Positives = 157/340 (46%), Gaps = 49/340 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI-------------------DVDRS 41
           + +L GG S+E  VSL + KA   AL+   F +  I                   DV   
Sbjct: 5   LCLLYGGKSAEHNVSLQTAKAVIGALDLNKFDIHPIFISTEGEWMKGPQLNAPVKDVKEL 64

Query: 42  VGLVLAHLKP----------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
                  + P                D+ F +LHG  GEDG VQ +LELL +PY  +G+L
Sbjct: 65  QFNNGEEISPNALSTSISSSEKGEGYDMIFPLLHGPNGEDGTVQGMLELLNLPYVGNGVL 124

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGG 136
           AS+  MDK+  K + +  G+P        R T  +         +  I  P  +KP   G
Sbjct: 125 ASSAGMDKVIMKNLFAQAGIPQVNYTWFIRSTWKANEEQAYESVEKEIGYPCFVKPANLG 184

Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD--ASLDVTEIAV 194
           SS+GI        +     ++  ++   +++IE+ V   E+  GV+G+      V    V
Sbjct: 185 SSVGISKCSSRDELAKAFQEAFQFDR--KIIIEEGVKAREIEIGVLGNDQPQCSVPGEIV 242

Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
           PK+DFY Y+ KY   ++  ++PA++  D+  +++ +A  + +A+ C G+ R+DF      
Sbjct: 243 PKTDFYDYKSKYEDGDTALIIPAEVEEDVADKMKEIAIQSFKALDCSGLVRADFFLTEDG 302

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           R ++  E+N  PG TP S+FP +  + G  +  L+  +V+
Sbjct: 303 R-IYMNEVNTMPGFTPYSMFPLLWKHTGVDYPTLIGKLVD 341


>gi|325685279|gb|EGD27393.1| D-alanine-D-alanine ligase A [Lactobacillus delbrueckii subsp.
           lactis DSM 20072]
          Length = 362

 Score =  131 bits (329), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 92/340 (27%), Positives = 168/340 (49%), Gaps = 49/340 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASA----------------------------LEDAGFK 32
           + ++ GG SSE EVS++S      A                            LE+ G+ 
Sbjct: 7   VGLIFGGNSSEYEVSITSAGNIYKAIDKDKFDVHPIWITNSGYVASEADSYKVLEEPGYM 66

Query: 33  VSQIDVDRSV-GLVLAHLKP--DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
           V + D   ++  L+    +P  D+ F ++HGN GEDG++Q +  L++ P+    +LA+A+
Sbjct: 67  VEKTDKTANLSNLIELASRPELDVLFPIVHGNLGEDGVLQGLFRLIDKPFVGVDVLAAAV 126

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMD------------SQHLISPPYVIKPLKGGS 137
           +MDK  +K +    GVPV   + + R+  +            S  L +    +KP   GS
Sbjct: 127 TMDKEFTKILAQRAGVPVAKWVSIKRYEYEDAKNQKLSYDWVSGQLGTSNLFVKPSNQGS 186

Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS---LDVTEIAV 194
           S+GI  +  D +    L +  ++ + D++L+E+ + G E+   V+G+       V  I  
Sbjct: 187 SVGITHVTDDSNYAEALAE--AFKYDDKVLVEEGIVGTEVETAVLGNDHPVVSGVGRIIN 244

Query: 195 PKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
             + +YSYE KYS+ ++T + +PA+IP +  ++VQ  A   +Q   C G++R D +    
Sbjct: 245 ADNTWYSYENKYSTESTTTLQIPAQIPAETAEKVQENALKIYQITECSGMARIDSMLRES 304

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
             +V + E+N  PG T +S++P++    G S+ +L+  ++
Sbjct: 305 DGEVIFNELNALPGFTNISMYPKLFEEDGISYPDLITRLI 344


>gi|269794439|ref|YP_003313894.1| D-alanine--D-alanine ligase [Sanguibacter keddieii DSM 10542]
 gi|269096624|gb|ACZ21060.1| D-alanine--D-alanine ligase [Sanguibacter keddieii DSM 10542]
          Length = 400

 Score =  131 bits (329), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 84/260 (32%), Positives = 137/260 (52%), Gaps = 20/260 (7%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+ F +LHG FGEDG +Q +LEL ++ Y  +G+LASA+ MDK   K V++  G+PV P  
Sbjct: 134 DVVFPLLHGPFGEDGTLQGMLELADVRYVGAGVLASAVGMDKHFMKLVLAGQGLPVGPYT 193

Query: 112 LV--NRFTMDSQHLISP------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
           +V    +  D++ + +       P  +KP + GSSLGI  +     +P  + ++    H 
Sbjct: 194 VVPPGEWDRDAEAVTARVAGLGLPVFVKPARAGSSLGISKVDDLADLPAAVAEAR--RHD 251

Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKS--------DFYSYELKYSSLNSTHVL 215
            ++++E  + G E+ C V+G    +    ++P           FY +E KY S  S  + 
Sbjct: 252 PKVIVEAGIVGREIECAVLGGRRGERARASLPGEIQVTDTTHAFYDFEAKYLSEQSVELT 311

Query: 216 -PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274
            PA +  ++  EVQ +A    +A+   G+SR D +F   + +V   EIN  PG TP S++
Sbjct: 312 CPADLSPELVAEVQDVAVRTFEAVSGEGLSRVD-VFVTEAGEVVVNEINTMPGFTPFSMY 370

Query: 275 PEMAAYAGYSFRELLLWMVE 294
           P M   +G  + EL+  +VE
Sbjct: 371 PRMWDRSGLPYAELITELVE 390


>gi|254967048|gb|ACT97560.1| putative D-alanine-D-alanine ligase [uncultured organism]
          Length = 326

 Score =  131 bits (329), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 92/323 (28%), Positives = 156/323 (48%), Gaps = 33/323 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-----------------VDRS-V 42
           +A++ GG +SE  VSL S +   S ++   + +  ++                 VDR+  
Sbjct: 5   IAIVAGGDTSEFHVSLRSAQGIYSFIDKEKYTLYIVEMHGLDWHVQLPDGAKAPVDRNDF 64

Query: 43  GLVLAHLKP--DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
             VL   K   D A+  +HG  GEDG +Q   ++L IPY+  G+LA++L+ DK    Q +
Sbjct: 65  SFVLDGEKVTFDFAYITIHGTPGEDGRLQGYFDMLHIPYSCCGVLAASLTYDKFACNQYL 124

Query: 101 SSCGVPVCPSILVNR----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
              GV +  S+L+         D    I  P  IKP  GGSS G+  +   + I   +  
Sbjct: 125 KGFGVRIAESLLLRGGQSVTDEDVMEKIGLPCFIKPSLGGSSFGVTKVTAKEQIQPAI-- 182

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV----TEIAVPKSDFYSYELKYSSLNST 212
           + ++    ++++E ++DG E+TCG        V    TE+ V  ++++ YE KY+   S 
Sbjct: 183 TKAFAEAQEVVVEAFMDGTEITCGCYKTKDRSVVFPITEV-VSHNEYFDYEAKYNGA-SD 240

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
            + PA+   D+ + VQ L    +  +G  GI R D++      K+  LE+N  PGMT  S
Sbjct: 241 EITPARKKDDLTRRVQTLTSAIYDILGAYGIIRVDYIITE-GEKINLLEVNTTPGMTATS 299

Query: 273 IFPEMAAYAGYSFRELLLWMVED 295
             P+    AG   ++++  ++E+
Sbjct: 300 FIPQQVRAAGMEMKDVMTDIIEN 322


>gi|325912205|ref|ZP_08174602.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus iners
           UPII 143-D]
 gi|325475864|gb|EGC79033.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus iners
           UPII 143-D]
          Length = 360

 Score =  131 bits (329), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 98/336 (29%), Positives = 163/336 (48%), Gaps = 51/336 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALE------------DAGFKVSQID----------- 37
           + ++ GG SSE EVS+ SG+    A++            + GF  S  D           
Sbjct: 7   VGLIFGGNSSEYEVSIISGRNIYKAIDKEKYDVYPMWITNTGFLASDADSRKVLEDPTYQ 66

Query: 38  ------VDRSVGLVLAHLKP--DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
                 V     ++    +P  D+ F ++HGN GEDG +Q +L +L+ P+    +LA+A+
Sbjct: 67  IENPHTVTNISNVIELSNRPEIDVFFPIVHGNLGEDGCLQGLLRILDKPFVGDDVLAAAI 126

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYV---------IKPLKGGSS 138
           +MDK  +K +    GVPV   I + RF  +      +S  YV         +KP   GSS
Sbjct: 127 TMDKELNKIMAQRAGVPVADWISIKRFEYNDAKNEKLSYDYVSQQLGTDLFVKPSNQGSS 186

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVP 195
           +GI  +         L +  ++ + D++L+E+ + G E+   V+G+    V+   +I   
Sbjct: 187 VGISHVTSAADYEKALAE--AFKYDDKVLVEETIKGTEVETAVLGNDDAIVSGVGQITNA 244

Query: 196 KSDFYSYELKYSSLNSTHVL--PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
           +  +YSYE KY+  NST  L  PA +P +I + V+  A   + A  C G++R D +    
Sbjct: 245 QGSWYSYENKYND-NSTSKLQIPADLPAEIVETVRSQALKVYHATECSGLARVDSMLSS- 302

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
             KV + E+N  PG T +S++P++    G S+ EL+
Sbjct: 303 DNKVIFNELNSLPGFTNISMYPKLFEQVGISYTELI 338


>gi|327200743|pdb|3R23|A Chain A, Crystal Structure Of D-Alanine--D-Alanine Ligase From
           Bacillus Anthracis
 gi|327200744|pdb|3R23|B Chain B, Crystal Structure Of D-Alanine--D-Alanine Ligase From
           Bacillus Anthracis
 gi|327533810|pdb|3R5X|A Chain A, Crystal Structure Of D-Alanine--D-Alanine Ligase From
           Bacillus Anthracis Complexed With Atp
 gi|327533811|pdb|3R5X|B Chain B, Crystal Structure Of D-Alanine--D-Alanine Ligase From
           Bacillus Anthracis Complexed With Atp
 gi|327533812|pdb|3R5X|C Chain C, Crystal Structure Of D-Alanine--D-Alanine Ligase From
           Bacillus Anthracis Complexed With Atp
 gi|327533813|pdb|3R5X|D Chain D, Crystal Structure Of D-Alanine--D-Alanine Ligase From
           Bacillus Anthracis Complexed With Atp
          Length = 307

 Score =  131 bits (329), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 89/305 (29%), Positives = 157/305 (51%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+ GG+SSE++VS+ +G    + L+   +++  I ++    L+      D A   LHG
Sbjct: 6   IGVIXGGVSSEKQVSIXTGNEXIANLDKNKYEIVPITLNEKXDLIEKAKDIDFALLALHG 65

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---FT 117
            +GEDG VQ  LE L IPY+ S  L+S +  DK  SK+++   G+     I + +     
Sbjct: 66  KYGEDGTVQGTLESLGIPYSGSNXLSSGICXDKNISKKILRYEGIETPDWIELTKXEDLN 125

Query: 118 MDSQHLISPPYVIKPLKGGSSLGI-IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
            D    +  P V+KP  GGSS+G+ IV  KD+ I   L     W+   +++IE+Y+ G E
Sbjct: 126 FDELDKLGFPLVVKPNSGGSSVGVKIVYDKDELISX-LETVFEWDS--EVVIEKYIKGEE 182

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +TC +     L +  I    ++F+ Y  KY   ++   +  ++P ++ + V + +   ++
Sbjct: 183 ITCSIFDGKQLPIISIR-HAAEFFDYNAKYDDASTIEEV-IELPAELKERVNKASLACYK 240

Query: 237 AIGCRGISRSD-FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           A+ C   +R D  + D +    +  E+N  PG T  S+ P+ A  AG  + +LL  ++E 
Sbjct: 241 ALKCSVYARVDXXVKDGIP---YVXEVNTLPGXTQASLLPKSADAAGIHYSKLLDXIIET 297

Query: 296 ASCLR 300
           +  +R
Sbjct: 298 SLRVR 302


>gi|195952517|ref|YP_002120807.1| D-alanine/D-alanine ligase [Hydrogenobaculum sp. Y04AAS1]
 gi|195932129|gb|ACG56829.1| D-alanine/D-alanine ligase [Hydrogenobaculum sp. Y04AAS1]
          Length = 288

 Score =  131 bits (329), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 87/293 (29%), Positives = 148/293 (50%), Gaps = 9/293 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+ GG S E+E++L   KA   +L+  G+ V  +++D+ +   L    P+  F + HG
Sbjct: 3   ITVITGGDSLEKEIALKGAKAVEESLKRLGYDVDVLEIDKDLCFKLKQTNPEKVFIIAHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG VQ +L++L IPY  S    SA+ MDK  SKQ+     +   P     +   D 
Sbjct: 63  TYGEDGRVQGLLDILGIPYIGSNTKTSAICMDKDFSKQIFEQNHIK-TPKWKAYK-PKDV 120

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
                 P + KP   GSS G+  ++ D+S  L     + +   D+L++E++++G ++T G
Sbjct: 121 IDWSIFPCIAKPASAGSSFGLFKVEDDKS--LKEAAQNIFKIDDKLIVEEFIEGKDMTVG 178

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
                 L+  EI +PK   Y +E KY+   S ++        I K+++ +A         
Sbjct: 179 YFKGFILEPIEI-IPKKGIYDFESKYTKGMSEYIFVE--DESIAKKLKEIASKLVDIFEL 235

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           + ++R DF      + V+ LEIN  PG+T +S+ P     AG SF +++  +V
Sbjct: 236 KDMARIDFRVK--GKDVYTLEINTIPGLTELSLLPMALKKAGISFNKMVEMLV 286


>gi|167747289|ref|ZP_02419416.1| hypothetical protein ANACAC_02003 [Anaerostipes caccae DSM 14662]
 gi|317471032|ref|ZP_07930407.1| D-alanine-D-alanine ligase [Anaerostipes sp. 3_2_56FAA]
 gi|167653267|gb|EDR97396.1| hypothetical protein ANACAC_02003 [Anaerostipes caccae DSM 14662]
 gi|316901473|gb|EFV23412.1| D-alanine-D-alanine ligase [Anaerostipes sp. 3_2_56FAA]
          Length = 350

 Score =  131 bits (329), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 96/330 (29%), Positives = 161/330 (48%), Gaps = 51/330 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASAL---------------------------EDAGFKV 33
           +AV+ GG SSE EVS  S      +L                           ED  ++ 
Sbjct: 5   IAVIFGGRSSEHEVSCVSAATVIRSLDEEKYNVILVGITKDGRWLLVDKLKEIEDGSWRE 64

Query: 34  SQI------DVDRSVGLVLA----HLKP-DLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
           S++      D +    ++LA     L+P D+ F VLHG  GEDG +Q + E+ +IPY   
Sbjct: 65  SRVNAIISPDTEDKALVLLAEGTYRLQPVDVIFPVLHGLNGEDGTIQGLFEMAQIPYVGC 124

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--------SQHLISPPYVIKPLK 134
           G+LASA+SMDK+ +K +V   G+     + + R  +         ++  +S P  +KP +
Sbjct: 125 GVLASAVSMDKVYTKIIVEDLGIRQAQFVHIRRSDLTQMEDALDRAEAKLSYPMFVKPSR 184

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA- 193
            GSS+G  V K +    L    S +  H   +L+E+ + G E+ C V+G   +  + +  
Sbjct: 185 AGSSVG--VSKAEDREALSKALSKAAEHDRNILVEETIVGREVECAVLGGKEIKASGVGE 242

Query: 194 -VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            +  +DFY Y+ KY++  S  ++   +P +  +E+++ A    +A+   G+SR DF F  
Sbjct: 243 ILAAADFYDYDAKYNNQESKTLIDPPMPEETREEIRKSAAEIFKAVDGYGLSRVDF-FIA 301

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAG 282
            + +V + EIN  PG T +S++P + A  G
Sbjct: 302 ENGEVVFNEINTLPGFTSISMYPMLWAAQG 331


>gi|297156912|gb|ADI06624.1| D-alanyl-alanine synthetase A [Streptomyces bingchenggensis BCW-1]
          Length = 390

 Score =  131 bits (329), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 88/263 (33%), Positives = 137/263 (52%), Gaps = 23/263 (8%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+ F +LHG +GEDG +Q +LEL  +PY  +G+LASA+ MDK   K+V  S G+PV P  
Sbjct: 125 DVVFPMLHGPYGEDGTLQGLLELSGVPYVGAGVLASAVGMDKEYMKRVFVSFGLPVGPYE 184

Query: 112 LVNRFTMDSQHLISP------------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
           ++     +     +             P  +KP + GSS+GI   K D    L+     +
Sbjct: 185 VIRPREWEKDPAAARKKIVEFAGEHGWPVFVKPARAGSSIGI--SKVDDISGLEEAIEEA 242

Query: 160 WNHGDQLLIEQYVDGIELTCGVMG-----DASLDVTEIAVPKSDFYSYELKYSSLNSTHV 214
             H  ++++E  + G E+ CGV+       AS+      V   DFY +E KY   ++  V
Sbjct: 243 RRHDPKIVVEALLRGREIECGVLEFEDGPRASVPAEIPPVSTHDFYDFEAKYID-SADGV 301

Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD-FLFDPLSRKVFWLEINVQPGMTPVSI 273
           +PA +  +  + V+ LA  A +A  C G+ R+D FL D  S +    EIN  PG TP+S+
Sbjct: 302 VPAPLTEEQTERVRELAVRAFEAASCEGLVRADFFLLD--SGEFVINEINTMPGFTPISM 359

Query: 274 FPEMAAYAGYSFRELLLWMVEDA 296
           +P M   +G S+ EL+  +++ A
Sbjct: 360 YPRMWQESGVSYPELVDRLIQAA 382


>gi|229085875|ref|ZP_04218100.1| D-alanine--D-alanine ligase [Bacillus cereus Rock3-44]
 gi|228697399|gb|EEL50159.1| D-alanine--D-alanine ligase [Bacillus cereus Rock3-44]
          Length = 286

 Score =  131 bits (329), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 85/287 (29%), Positives = 150/287 (52%), Gaps = 11/287 (3%)

Query: 18  SGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEI 77
           +G+   + L+   +++  I +     LV      D+A   LHG +GEDG +Q  LE L +
Sbjct: 2   TGEEMIAHLDKNKYEIVPITLHDKKELVEKGSNLDIALLALHGEYGEDGTIQGTLETLGV 61

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-LVNR--FTMDSQHLISPPYVIKPLK 134
           PYT SG+L+S + MDK  SK+++   G+     I L NR    +D    +  P V+KP  
Sbjct: 62  PYTGSGMLSSGICMDKNLSKKMIRYDGIETPDWIHLSNREELQLDEIDKMGYPLVVKPNS 121

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194
           GGSS+G+ ++   +++   L     W+   +++IE+Y+ G E+TC ++    L +  I  
Sbjct: 122 GGSSVGVKIVYDKETLLASLEDVFKWDA--EIVIEKYIKGEEITCSILDGKLLPIISIQ- 178

Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF-DPL 253
             ++F+ Y  KY  + +   +  ++PL  Y+ V   A   ++ + C   +R D +  D +
Sbjct: 179 HTAEFFDYHAKYDDVATIEEV-VELPLATYERVAEAAMACYKTLKCSVYARVDMMIKDGI 237

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
               + +E+N  PGMT  S+ P+ A  AG S+ +LL  ++E +  +R
Sbjct: 238 P---YVMEVNTLPGMTKNSLLPKSAHAAGISYNKLLDTIIETSLQVR 281


>gi|111023466|ref|YP_706438.1| D-alanyl-alanine synthetase A [Rhodococcus jostii RHA1]
 gi|123339682|sp|Q0S2F6|DDL_RHOSR RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|110822996|gb|ABG98280.1| D-alanine--D-alanine ligase [Rhodococcus jostii RHA1]
          Length = 368

 Score =  131 bits (329), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 86/272 (31%), Positives = 143/272 (52%), Gaps = 20/272 (7%)

Query: 39  DRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQ 98
           D   G +LA +  D+ F VLHG +GEDG +Q +LEL  +PY   G+LASA  MDK  +K+
Sbjct: 95  DGEAGKILASV--DVVFPVLHGAYGEDGTIQGLLELAGVPYVGPGVLASAAGMDKEFTKK 152

Query: 99  VVSSCGVPVCPSILVN----RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154
           ++++ G+P+   +++       T + +  +  P  +KP +GGSS+GI  +   +   LD 
Sbjct: 153 LLAAEGLPIGFQVVLRPGTATLTDEQKSRLHLPVFVKPARGGSSIGITRVA--EWAALDD 210

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVM----GDASLDV-TEIAVPKS-----DFYSYEL 204
             + +  H  ++++E  + G E+ CGV+    GD    V  EI +P+       FY ++ 
Sbjct: 211 AIAHARLHDPKVIVESGIIGREVECGVLEFPDGDVRASVIAEIRMPEGAGDDEAFYDFDS 270

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           KY        +PAK+   +  E++ LA  A  A+ C+G++R DF        +   EIN 
Sbjct: 271 KYLDDVCEFDVPAKLDESVSDEIRELAVRAFSALDCQGLARVDFFVTEDGPVIN--EINT 328

Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            PG T +S++P M    G  +  L+  +V+ A
Sbjct: 329 MPGFTSISMYPRMWGAVGVDYGTLVSTLVDTA 360


>gi|289167463|ref|YP_003445732.1| D-ala,D-ala ligase [Streptococcus mitis B6]
 gi|288907030|emb|CBJ21864.1| D-ala,D-ala ligase [Streptococcus mitis B6]
          Length = 347

 Score =  131 bits (329), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 101/331 (30%), Positives = 160/331 (48%), Gaps = 43/331 (12%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKV----------------------------- 33
           +L GG S+EREVS+ S ++   A+    F V                             
Sbjct: 7   LLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDFIKTQEFSQTPGQEDRLMT 66

Query: 34  -SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
              ID D+ V     + +  + F VLHG  GEDG VQ  LE+L++PY    IL+S+L+MD
Sbjct: 67  NETIDWDKQVAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLAMD 126

Query: 93  KMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           K+ +K+V+ S G+   P +       V     + +  ++ P   KP   GSS+GI   K 
Sbjct: 127 KITTKRVLESVGIAQVPYVAIVEGDDVTSKITEVEEKLNYPVFTKPSNMGSSVGI--SKS 184

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYE 203
           +    L      ++ +  ++L+EQ V+  E+  G++G+  +  T   E+ V    FY Y+
Sbjct: 185 ENQEELRQALKLAFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVAFYDYD 243

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            KY     T  +PAKI  D+   +++ A  A +AIG  G+SR DF +     ++F  E+N
Sbjct: 244 AKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDFFYTD-KGEIFLNELN 302

Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             PG T  S++P +    G S+ EL+  +VE
Sbjct: 303 TMPGFTQWSMYPLLWDNMGISYPELIERLVE 333


>gi|300741707|ref|ZP_07071728.1| D-alanine--D-alanine ligase [Rothia dentocariosa M567]
 gi|300380892|gb|EFJ77454.1| D-alanine--D-alanine ligase [Rothia dentocariosa M567]
          Length = 374

 Score =  131 bits (329), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 85/255 (33%), Positives = 134/255 (52%), Gaps = 20/255 (7%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+ F ++HG FGEDG +Q +LEL E+PY   G+ ASA+ MDK   K    S G+ V P  
Sbjct: 108 DVVFPLIHGPFGEDGTIQGLLELAELPYVGCGVTASAVGMDKHFMKVAFESAGLEVGPYE 167

Query: 112 LVN--RFTMDSQH------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
           +V   ++T + +        +  P  +KP + GSS GI  + K + +   + ++    H 
Sbjct: 168 VVTDRQWTHEREESLKRITALGYPMFVKPTRAGSSFGITKVDKFEELVPAIEEAR--RHD 225

Query: 164 DQLLIEQYVDGIELTCGVMGDASLDV------TEIAVPKSD--FYSYELKYSSLNSTHV- 214
            ++++E  + G E+ CGV+     D+       EI V   D  FY ++ KY S +S    
Sbjct: 226 AKIIVEAGIVGREIECGVLDGHHGDMPRASYPGEIEVVDEDHGFYDFDAKYISKSSAVTR 285

Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274
            PA +P D+ + ++ LA  A  A+   G+SR+DF + P  R V   E+N  PG TP+S++
Sbjct: 286 CPADLPKDMQERLRALAVKAFLALDGEGLSRADFFYTPDGRLVIN-EVNTMPGFTPISMY 344

Query: 275 PEMAAYAGYSFRELL 289
             M    G S+ EL+
Sbjct: 345 KTMWENTGISYTELI 359


>gi|157413868|ref|YP_001484734.1| D-alanyl-alanine synthetase A [Prochlorococcus marinus str. MIT
           9215]
 gi|167012330|sp|A8G6B7|DDL_PROM2 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|157388443|gb|ABV51148.1| D-alanine--D-alanine ligase [Prochlorococcus marinus str. MIT 9215]
          Length = 355

 Score =  131 bits (329), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 97/345 (28%), Positives = 166/345 (48%), Gaps = 54/345 (15%)

Query: 1   MAVLMGGISSEREVSLSSGK----ACASALEDAGFKVSQ---------IDVDRSVGLVLA 47
           + ++ GG S+E EVS+SS K    A  S +    FKV           +D D S  ++  
Sbjct: 9   IGLIFGGYSNEHEVSISSAKTVFQAFNSEINKKRFKVKSFYIDKYGDWLDNDLSEKILND 68

Query: 48  HLKP-------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
            +K                          D+ F +LHG  GEDG +  +L+    P    
Sbjct: 69  EIKSNNIKKQEIVNQQKINFLDGIEFQNIDVWFPLLHGLNGEDGSIHGLLQYTRKPIVGC 128

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL-----------ISPPYVIK 131
           GIL SA+ MDK+  K + S+  +P    +      +D + +           ++ P+ +K
Sbjct: 129 GILGSAIGMDKIMMKTIFSNLKIPQVNYLAFQNEDLDDREVKKKVINEILKKLNFPFFVK 188

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSSLGI  +  +  I   L ++   +   ++L+E+ ++  E+ CG++G++ L  +E
Sbjct: 189 PSNSGSSLGISKVINESEILQSLEKAQKIDS--RILVEEGLEVREIECGIIGNSELLTSE 246

Query: 192 IAVPK--SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
           I   K  SD+Y Y+ KY S N+  ++PA+I   I KE++++A  + +A+   G +R DF 
Sbjct: 247 IGEIKYESDWYDYDSKYYS-NNKIIIPAEIDSKITKEIKKIAIQSCRALNIFGFARVDFF 305

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            +  S K+   EIN  PG T  S+FP +   +G +  +L+  +V+
Sbjct: 306 LEKSSNKILLNEINTIPGFTTNSMFPMLWKASGLNIEQLVAKLVD 350


>gi|219849721|ref|YP_002464154.1| D-alanine/D-alanine ligase [Chloroflexus aggregans DSM 9485]
 gi|219543980|gb|ACL25718.1| D-alanine/D-alanine ligase [Chloroflexus aggregans DSM 9485]
          Length = 362

 Score =  131 bits (329), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 99/346 (28%), Positives = 163/346 (47%), Gaps = 56/346 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS------------------- 41
           +AV+ GG S E EVSL S  A  S L+   + +  + + +                    
Sbjct: 7   IAVIFGGQSGEHEVSLVSAHAVMSNLDPDRYHIEALGIGKDGRWWHGPGALAMLMAAADP 66

Query: 42  --------------------VGLVLAHLKP-DLAFNVLHGNFGEDGLVQAILELLEIPYT 80
                               VG     L P D+ F VLHG +GEDG +Q + EL   PY 
Sbjct: 67  ARLPASATMVAPGPVRELGRVGEPGWSLPPADVIFPVLHGPYGEDGTIQGLFELAGHPYV 126

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP--------PYVIKP 132
             G+ ASA+ MDK   K   ++  +P+ P +LV R  + +  ++          P  +KP
Sbjct: 127 GCGVAASAVGMDKAFMKAAFAAADLPILPWVLVRRHELAALEMVCERIEATLHFPLFVKP 186

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT-- 190
              GSS+G+  ++    +   L +++   H  ++++EQ +   E+   V+G+  ++V+  
Sbjct: 187 ANLGSSVGVSKVRDRAELITGLHEAA--RHDRRIVVEQGISAREIEISVLGNEHVEVSIP 244

Query: 191 -EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
            EI +P  ++Y Y  KY +  S  ++PA +      +VQ LA  A QAI   G++R DFL
Sbjct: 245 GEI-IPAGEWYDYHAKYIAGGSQTIVPAALTEMQIAQVQTLAKRAFQAIDGAGLARVDFL 303

Query: 250 FDPLSRKVFWL-EINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            D   +   WL E+N  PG TP+S++ +M   +G  + +LL  ++E
Sbjct: 304 LD-REQGTLWLNEVNTMPGFTPISMYAKMWEASGLPYPQLLDRLIE 348


>gi|226310174|ref|YP_002770068.1| ligase [Brevibacillus brevis NBRC 100599]
 gi|226093122|dbj|BAH41564.1| ligase [Brevibacillus brevis NBRC 100599]
          Length = 350

 Score =  131 bits (329), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 95/292 (32%), Positives = 142/292 (48%), Gaps = 14/292 (4%)

Query: 6   GGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGED 65
           G I S R  S    + C  A      +V  I    +  + +   K D+ F +LHG  GED
Sbjct: 54  GNIESIRNDSWHQSEKCVPAFLSPCRQVRGIVTQENGAMTVT--KVDVVFPILHGKNGED 111

Query: 66  GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTMDSQHL 123
           G VQ +LEL  IP+     L+SA+ MDK  +  +    G+    S+ V  N      Q  
Sbjct: 112 GTVQGLLELAGIPFVGCHTLSSAICMDKDIAHTLAEGSGIKTPRSVAVYPNTDLATVQAA 171

Query: 124 ISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
             P   P  +KP K GSS+GI   K      L     ++  H D+++IE+ + G E+ C 
Sbjct: 172 TEPLGFPLYVKPAKAGSSIGI--TKAYSLSELFFGIENALQHDDKVVIEENITGFEVGCA 229

Query: 181 VMGDASLDVTEIAVPK--SDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQA 237
           V+G+  + V E+   +    F+ Y  KY SL + H+ +PA+I  ++  ++++ A   +Q 
Sbjct: 230 VLGNREVIVGEVDEIELLQGFFDYTEKY-SLETAHIHVPARIDEELAHKIKQTATHLYQV 288

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
            GCRG +R D    P    VF  E+N  PG T  S +P M   AG S++ELL
Sbjct: 289 FGCRGFARVDMFVTPDGDIVFN-EVNTIPGFTSKSRYPSMLRAAGISYKELL 339


>gi|212711834|ref|ZP_03319962.1| hypothetical protein PROVALCAL_02909 [Providencia alcalifaciens DSM
           30120]
 gi|212685356|gb|EEB44884.1| hypothetical protein PROVALCAL_02909 [Providencia alcalifaciens DSM
           30120]
          Length = 367

 Score =  131 bits (329), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 100/347 (28%), Positives = 165/347 (47%), Gaps = 57/347 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD--------------------- 39
           + V+ GG S+E EVSL S K   + L+ + F V  I ++                     
Sbjct: 6   VGVIFGGKSTEHEVSLQSAKNIINGLDRSKFDVCLIGINKEGQWHEYDEANFLLHGDDPA 65

Query: 40  --------RSVGLV----------LAHLKP----DLAFNVLHGNFGEDGLVQAILELLEI 77
                   RS+ +V          L   KP    D+ F ++HGN GEDG +Q +L +  +
Sbjct: 66  HIALNTPKRSIAIVPGKQSEQFISLEDAKPLPQIDVIFPIVHGNLGEDGSLQGLLRMANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD------SQHLISPPYVIK 131
           P+   G+L S+  MDK  +K+++   G+ + P I + +   D      +   +  P  IK
Sbjct: 126 PFVGPGVLGSSACMDKDVTKRLLRDAGLHIAPFITILKSGRDEISYSATVEKLGLPLFIK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA---SLD 188
           P   GSS+GI  +  +      L    ++    ++LIE  V G E+ C V+G+    +  
Sbjct: 186 PANQGSSVGISKVNNESEFNAAL--DFAFLFDVKVLIESAVKGREIECAVLGNEHPLASP 243

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
             EI +  S FY+Y  KY   N   V+ PA +  DI  +++ +A  A+QA+ C G+SR D
Sbjct: 244 CGEIVLHDS-FYAYHTKYIDENGASVVAPADLEHDISDKIRAIALEAYQALNCSGMSRVD 302

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            +F   +  V   EIN  PG T +S++P++    G +++EL+  ++E
Sbjct: 303 -VFLTENNDVVINEINTLPGFTNISMYPKLWQQGGMTYQELISRLIE 348


>gi|253577485|ref|ZP_04854799.1| D-alanine-D-alanine ligase [Paenibacillus sp. oral taxon 786 str.
           D14]
 gi|251843104|gb|EES71138.1| D-alanine-D-alanine ligase [Paenibacillus sp. oral taxon 786 str.
           D14]
          Length = 366

 Score =  131 bits (329), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 85/289 (29%), Positives = 149/289 (51%), Gaps = 22/289 (7%)

Query: 24  SALEDAGFKVSQIDVDRSVGLVLAHLKP-----DLAFNVLHGNFGEDGLVQAILELLEIP 78
           +ALE+   + S+ D   ++GL+ + L       D+ F +LHG  GEDG +Q + E+ ++P
Sbjct: 64  AALEELKLEESKGDTAAAMGLLFSKLSTGQSEIDVVFPLLHGTNGEDGTIQGLFEMADLP 123

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTMDSQHLISP-------PYV 129
           Y  +G+LASA  MDK+  K++ +  G+  C       + +   S  LI         P  
Sbjct: 124 YVGAGVLASAAGMDKVIMKKLFAEAGLEQCAYCYFTASEWERSSHTLIQSIEEKLGYPCF 183

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSS--WNHGDQLLIEQYVDGIELTCGVMGDAS- 186
           +KP   GSS+GI   +  +    +LL S +  + +  ++++E++VD  E+  GV+G+   
Sbjct: 184 VKPANLGSSVGISKARNRE----ELLSSVALAFRYDLKVIVEEFVDAREVEVGVLGNDEP 239

Query: 187 -LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
              V    V   ++Y Y+ KY    S  ++PA I  ++ + ++ LA  A +AI   G+ R
Sbjct: 240 LASVPGEIVSSGEYYDYQAKYLDGKSQMLIPAPIDTELAERIRELAVKAFKAIAGSGLCR 299

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           +DF       K++  E+N  PG TP S++P +    G ++  LL  ++E
Sbjct: 300 ADFFVRKSDHKIWINEVNTMPGFTPFSMYPLLWRETGVAYEVLLDRLIE 348


>gi|167551817|ref|ZP_02345570.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|205323388|gb|EDZ11227.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
          Length = 364

 Score =  131 bits (329), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 89/346 (25%), Positives = 167/346 (48%), Gaps = 55/346 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD--------------------- 39
           + ++ GG S+E EVSL S K    A++   F V  + +D                     
Sbjct: 6   VGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGIDKAGQWHVNDAENYLQNADDPA 65

Query: 40  ----RSVGLVLAHL--------------KP----DLAFNVLHGNFGEDGLVQAILELLEI 77
               R   + LA +              +P    D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  HIALRPSAISLAQVPGKHQHQLINAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVIK 131
           P+  S +L+SA  MDK  +K+++   G+ + P I + R    +      +  +  P  +K
Sbjct: 126 PFVGSDVLSSAACMDKDVAKRLLRDAGLNIAPFITLTRTNRHAFSFAEVESRLGLPLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  +  +      +  +  ++H  ++++EQ + G E+ C V+G+ +   + 
Sbjct: 186 PANQGSSVGVSKVANEAQYQQAVALAFEFDH--KVVVEQGIKGREIECAVLGNDNPQAST 243

Query: 192 IA--VPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               V  S+FY+Y+ KY   N    V+PA+IP ++  +++ +A  A+Q +GC G++R D 
Sbjct: 244 CGEIVLNSEFYAYDTKYIDDNGAQVVVPAQIPSEVNDKIRAIAIQAYQTLGCAGMARVD- 302

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           +F     +V   EIN  PG T +S++P++   +   + +L+  ++E
Sbjct: 303 VFLTADNEVVINEINTLPGFTNISMYPKLWQASRLGYTDLISRLIE 348


>gi|332687108|ref|YP_004456882.1| D-alanine--D-alanine ligase [Melissococcus plutonius ATCC 35311]
 gi|332371117|dbj|BAK22073.1| D-alanine--D-alanine ligase [Melissococcus plutonius ATCC 35311]
          Length = 356

 Score =  131 bits (329), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 76/257 (29%), Positives = 138/257 (53%), Gaps = 16/257 (6%)

Query: 50  KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109
           K  + F VLHG  GEDG +Q  LE + +PY  +G+LASA +MDK+ +K ++ + G+P  P
Sbjct: 89  KDAIVFPVLHGPNGEDGTIQGFLETISMPYVGTGVLASATAMDKIMTKYLLQTVGIPQTP 148

Query: 110 --SILVNRFTMDSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160
              +L N +  DS+ L          P  +KP   GSS+GI  ++  + +   L    ++
Sbjct: 149 YVPVLKNEWKNDSKQLFERCEGTLLYPMFVKPANLGSSVGISKVENREELQKAL--ELAY 206

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPA 217
            +  ++++EQ ++  E+   ++G+  +  T   E+ V   DFY Y+ KY     +  +PA
Sbjct: 207 KYDSRVIVEQGIEAREIEVAILGNEDVRTTLPGEV-VKNVDFYDYQAKYVDNQISMKIPA 265

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
           ++P ++ ++ Q  A  A++ +   G+SR DF F     ++F  E+N  PG T  S++P +
Sbjct: 266 ELPAEVCRQAQEYAKKAYKTLDGSGLSRCDF-FLTNKNELFLNELNTMPGFTEFSMYPSL 324

Query: 278 AAYAGYSFRELLLWMVE 294
               G  + +L+  +++
Sbjct: 325 WENMGLKYSDLIEELIQ 341


>gi|152974076|ref|YP_001373593.1| D-alanyl-alanine synthetase A [Bacillus cereus subsp. cytotoxis NVH
           391-98]
 gi|189083031|sp|A7GKE0|DDL_BACCN RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|152022828|gb|ABS20598.1| D-alanine--D-alanine ligase [Bacillus cytotoxicus NVH 391-98]
          Length = 362

 Score =  131 bits (329), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 98/339 (28%), Positives = 159/339 (46%), Gaps = 53/339 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------DRSVGLVLA---- 47
           + +L GG S+E +VSL +  A   AL    F++  I +         +R  G V +    
Sbjct: 6   LGLLYGGKSAEHQVSLQTALAAIKALNQEKFEIHPIYITEQGQWMRGERIEGEVTSVQAL 65

Query: 48  -------HLKP-------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTH 81
                   + P                   D+ F +LHG  GEDG VQ +LEL+ IPY  
Sbjct: 66  QMSGEANAISPVSLSTEIIPAPASKQEEAIDVIFPLLHGPNGEDGTVQGLLELMNIPYVG 125

Query: 82  SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKP 132
           +G+LASA  MDK+  K + +  G+         R   +          +  +  P  +KP
Sbjct: 126 NGVLASAAGMDKVVMKNIFAEAGLNQAKYTSFVRSVWEKNREEAYEKVEEALGYPCFVKP 185

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG--DASLDVT 190
              GSS+GI   K  + +     ++  ++   ++++E+ + G E+  GV+G  D    V 
Sbjct: 186 ANLGSSVGINKCKDREELEKAFEEAFQFDR--KIIVEENIIGREVEVGVLGNDDPKCSVV 243

Query: 191 EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
              VPK +FY Y+ KY   ++  ++PA+I  +    +QR A  A QA+   G++R+DF F
Sbjct: 244 GEIVPKKEFYDYKSKYIDGDTALIIPAEITEEETATIQRDAIRAFQALDGAGLTRADF-F 302

Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
                +V+  E+N  PG TP S+FP +  + G S+ EL+
Sbjct: 303 LTKDGEVYINEVNTMPGFTPFSMFPLLWQHTGLSYPELI 341


>gi|238793959|ref|ZP_04637578.1| D-alanine--D-alanine ligase [Yersinia intermedia ATCC 29909]
 gi|238726726|gb|EEQ18261.1| D-alanine--D-alanine ligase [Yersinia intermedia ATCC 29909]
          Length = 368

 Score =  131 bits (329), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 99/352 (28%), Positives = 165/352 (46%), Gaps = 67/352 (19%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------------------- 40
           + V+ GG S+E EVSL S K    A++   F V+ + +D+                    
Sbjct: 6   VGVIFGGKSAEHEVSLQSAKNIVEAIDKEKFDVTLLGIDKQGEWHVNDASSYLLNAENPA 65

Query: 41  ---------SVGLV----------------LAHLKPDLAFNVLHGNFGEDGLVQAILELL 75
                    +V L+                LA L  D+ F ++HG  GEDG +Q +L + 
Sbjct: 66  LISLNHSNKNVALIPGQEQQQLIAADNATALAQL--DVIFPIVHGTLGEDGSLQGLLRMA 123

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYV 129
            IP+  SG++ SA+SMDK  +K+++   G+ + P I + R   D+         +  P  
Sbjct: 124 NIPFVGSGVVGSAVSMDKDIAKRLLRDAGLNIAPFITLTRANKDNYSFEQMTAKLGLPLF 183

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD----A 185
           IKP   GSS+G+  ++        +  +  ++H  ++L+E  + G E+ C V+G+    A
Sbjct: 184 IKPANQGSSVGVSKVRNAAEYQQAVTLAFDFDH--KVLVESAIVGREIECAVLGNDNPRA 241

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTH---VLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
           SL   E+ V   +FYSY+ KY  +N T    V+PA I       ++ +A  A + + CRG
Sbjct: 242 SL-CGEVVV-SDEFYSYDTKY--INETGAQVVIPAVIDSAASDHIRAVALAAFRTLECRG 297

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           ++R D    P    V   EIN  PG T ++++P++    G    EL+  ++E
Sbjct: 298 LARVDVFLTP-ENTVIINEINTLPGFTNINMYPKLWRATGVGSTELITTLIE 348


>gi|306840264|ref|ZP_07473038.1| D-alanine--D-alanine ligase [Brucella sp. BO2]
 gi|306289791|gb|EFM60973.1| D-alanine--D-alanine ligase [Brucella sp. BO2]
          Length = 366

 Score =  131 bits (329), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 96/343 (27%), Positives = 168/343 (48%), Gaps = 55/343 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           + VL GG S+E +VS+ S     +AL+ A ++   + V R+   +L+             
Sbjct: 21  IVVLFGGRSAEHDVSVLSATNVMNALDPAKYEAVPVFVTRAGQWLLSRFVNGALEKPSSG 80

Query: 50  --------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                     K D+ F VLHG  GEDG VQ + ++  +P    G
Sbjct: 81  AELCLVPGGCGRAIVVPDAGAPYEANKIDIIFPVLHGLHGEDGAVQGLAQVARVPLAGCG 140

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSL 139
           IL SA ++DK  +K++ +  G+    S+ + R  + +    +  +  P  IKP + GSS+
Sbjct: 141 ILGSANALDKDIAKRLFNEAGLSTAKSVTITREEVPAFSALEQALGLPIFIKPARQGSSV 200

Query: 140 GI--IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD--ASLDVTEIA-- 193
           G+  +V + D    +    S  + + D+LL E+++   E+ CGV+ D   +L V+     
Sbjct: 201 GVHKVVTEADYQAAM----SDGFTYDDKLLAEEFIQAREVECGVLEDEGGALFVSRAGEI 256

Query: 194 VPKSD--FYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
           VP     FYSY+ KY   + T + +PA++P  +  E++ +A  A + +GC  ++R DF F
Sbjct: 257 VPAESHCFYSYDAKYIDADGTEIKVPAELPEQVENEIRAIAAKAFRVLGCDSMARVDF-F 315

Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
               R++   EIN  PG T +S++ ++ A +G S+ E++  +V
Sbjct: 316 VTADRRIVLNEINTIPGFTDMSMYSKVMAVSGVSYPEIINRLV 358


>gi|290957134|ref|YP_003488316.1| D-alanine-D-alanine ligase [Streptomyces scabiei 87.22]
 gi|260646660|emb|CBG69757.1| D-alanine-D-alanine ligase [Streptomyces scabiei 87.22]
          Length = 385

 Score =  130 bits (328), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 89/263 (33%), Positives = 139/263 (52%), Gaps = 23/263 (8%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+ F VLHG +GEDG +Q +LEL  +PY  SG+LASA+  DK   K+V +S G+ V P +
Sbjct: 120 DVVFPVLHGPYGEDGTLQGMLELSGVPYVGSGVLASAVGQDKEYMKRVFTSFGLKVGPYV 179

Query: 112 LV--NRFTMDSQHLISP----------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
           ++    + +D                 P  +KP + GSS+GI   K D    LD   + +
Sbjct: 180 VIRPREWQLDEAAARKKIIDLAGEHGWPLFVKPARAGSSIGI--TKVDDLAGLDEAIAEA 237

Query: 160 WNHGDQLLIEQYVDGIELTCGVM----GDASLDVTEIAVPKSD-FYSYELKYSSLNST-H 213
             H  ++L+E  + G E+ CGV+    G  +    EI  P++  +Y ++ KY  ++ST  
Sbjct: 238 QRHDPKILVEAALRGREIECGVLEFEDGPRASVPAEIPPPETHAYYDFDAKY--IDSTPG 295

Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273
           ++PA +  +   EV+RLA  A  A  C G+ R+DF        V   EIN  PG TP+S+
Sbjct: 296 IVPAPLTPEETAEVRRLAVDAFDAASCEGLVRADFFLTEDGEFVI-NEINTLPGFTPISM 354

Query: 274 FPEMAAYAGYSFRELLLWMVEDA 296
           +P M   +G  + EL+  +++ A
Sbjct: 355 YPAMWQASGIEYPELVDRLIQAA 377


>gi|255994688|ref|ZP_05427823.1| D-alanine--D-alanine ligase [Eubacterium saphenum ATCC 49989]
 gi|255993401|gb|EEU03490.1| D-alanine--D-alanine ligase [Eubacterium saphenum ATCC 49989]
          Length = 359

 Score =  130 bits (328), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 92/325 (28%), Positives = 159/325 (48%), Gaps = 39/325 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS----------VGLVLAHLK 50
           +AV+ GG S E E+S  S    A  L +   +V  I +D+S          +      +K
Sbjct: 11  VAVIFGGRSPEHEISCISAGFIAKGLREIFGRVVNIYIDKSGNWHRVDDGIIDFTKLDVK 70

Query: 51  P--------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRS 96
                          D+ ++VLHG +GEDG +Q + E+ ++PY    + ASA++MDK+ +
Sbjct: 71  NEAESCTIEQCLTDVDIVWSVLHGPYGEDGKIQGLFEMYDVPYVGCNVTASAIAMDKVIA 130

Query: 97  KQVVSSCGVPVCPS--ILVNRFTMDSQHLISP------PYVIKPLKGGSSLGIIVIKKDQ 148
           K V    G+       +L   +  D +  +        P  +KP   GSS+GI     ++
Sbjct: 131 KNVFEHAGLKTVKYELLLEKEYRDDEERELERIEKLGFPMFVKPANMGSSVGISKATDEK 190

Query: 149 SIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELK 205
            +   +  +  +++  +L+IE+ + G E+   V G+   + +   EI  P+++FY  + K
Sbjct: 191 KLKKAIEDAFQYDY--RLIIEENIIGKEVEVAVFGNGPYEASVAGEIR-PRAEFYDVDAK 247

Query: 206 YSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           Y S   T  ++PA I  +  K +Q  A +A +AI C+GI R D      S ++F  E+N 
Sbjct: 248 YHSGGDTAIIIPADISEEQMKMLQEEAKIAARAIDCKGICRVDSFIKADSNEIFINEVNT 307

Query: 265 QPGMTPVSIFPEMAAYAGYSFRELL 289
            PG T +S++P++   +G S +ELL
Sbjct: 308 MPGFTEISMYPKLWEVSGISNKELL 332


>gi|218281654|ref|ZP_03488055.1| hypothetical protein EUBIFOR_00622 [Eubacterium biforme DSM 3989]
 gi|218217261|gb|EEC90799.1| hypothetical protein EUBIFOR_00622 [Eubacterium biforme DSM 3989]
          Length = 358

 Score =  130 bits (328), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 81/253 (32%), Positives = 127/253 (50%), Gaps = 14/253 (5%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDK----MRSKQVVSSCGVPV 107
           D  F VLHG  GEDGL+Q +LEL+ I Y    +++SA+SMDK    +  K+    C   +
Sbjct: 100 DCVFPVLHGKNGEDGLIQGLLELMNIHYVGCDVMSSAMSMDKEIMHILCKEAKIPCADYI 159

Query: 108 CPSILVNRFTMDS-QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQL 166
           C        T +  Q  I  P++IKP   GSS G+  +   +        +  ++   ++
Sbjct: 160 CLYANRENPTFEQIQEKIELPWIIKPCNAGSSYGVHFVNNKEEFESACKDAFFYDGRGKI 219

Query: 167 LIEQYVDGIELTCGVMGD-----ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL 221
           L+E+ + G E+ C VMG+      S+D  EI      F+ +E KY    +    PA+I  
Sbjct: 220 LVEKVIKGFEIGCAVMGNEEIFTGSIDEIEIT---GGFFDFEGKYEMKGAAIYCPARIDE 276

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYA 281
             +KE Q LA   + A+ C G++R D +F    ++V   E+N  PG+T  S +P M   A
Sbjct: 277 KTFKEAQELARKTYIAMNCCGMARVD-MFVTEDKEVILNELNTIPGLTATSRYPSMMKVA 335

Query: 282 GYSFRELLLWMVE 294
           G  F +L+  ++E
Sbjct: 336 GIEFADLIDKLIE 348


>gi|239944155|ref|ZP_04696092.1| D-alanine--D-alanine ligase [Streptomyces roseosporus NRRL 15998]
 gi|239990610|ref|ZP_04711274.1| D-alanine--D-alanine ligase [Streptomyces roseosporus NRRL 11379]
 gi|291447625|ref|ZP_06587015.1| D-alanine-D-alanine ligase [Streptomyces roseosporus NRRL 15998]
 gi|291350572|gb|EFE77476.1| D-alanine-D-alanine ligase [Streptomyces roseosporus NRRL 15998]
          Length = 320

 Score =  130 bits (328), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 106/309 (34%), Positives = 154/309 (49%), Gaps = 20/309 (6%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VL GG S ER  SL+SGK  A AL   GF    ID      +     K D+A   LHG
Sbjct: 11  VGVLYGGDSPERAGSLASGKTAADALVSEGFNTLLIDTAEPQAIESIQ-KIDVALIALHG 69

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCG------VPVCPSILVN 114
             GEDG +Q +LE+L +PYT SG+LASA+ M K   KQ++SS G      + + PS+  +
Sbjct: 70  PGGEDGKIQGLLEILGVPYTGSGVLASAVGMHKPTFKQLISSHGLDTPKWITLDPSLTSD 129

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS-SSWNHGDQL--LIEQY 171
             +   +  +  P  IKP  GG SLG  + +     P D     +  N  D L  L+E+Y
Sbjct: 130 EMSKVVESHVGWPVFIKPSAGGGSLGAGIGRS----PSDFAHMLADLNRQDYLEYLVEEY 185

Query: 172 VDGIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227
           V G   + GV+  +    +L V ++   + +FY Y  K+         P+ +P D+ + +
Sbjct: 186 VPGRPCSVGVIETSGRPEALPVHDVETDR-EFYDYAAKHDPSKRIENCPSILPKDVTERL 244

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287
           Q  A   H   G  G+SR DF+ D   R V  LEIN  PG++ +     MA  AG S+  
Sbjct: 245 QEEAVRIHMLTGAHGVSRVDFIVDDNGRSVI-LEINTVPGLSDMGNLATMAKAAGMSYPA 303

Query: 288 LLLWMVEDA 296
           L+  +++ A
Sbjct: 304 LVTAVLKTA 312


>gi|15901506|ref|NP_346110.1| D-alanyl-alanine synthetase A [Streptococcus pneumoniae TIGR4]
 gi|111658549|ref|ZP_01409212.1| hypothetical protein SpneT_02000305 [Streptococcus pneumoniae
           TIGR4]
 gi|14973163|gb|AAK75750.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae TIGR4]
          Length = 347

 Score =  130 bits (328), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 100/331 (30%), Positives = 162/331 (48%), Gaps = 43/331 (12%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQ--------------------------- 35
           +L GG S+EREVS+ S ++   A++   F V                             
Sbjct: 7   LLYGGRSAEREVSVLSAESVMRAVDYDRFTVKTFFISQSGDFIKTQEFSHAPGQEDRLMT 66

Query: 36  ---IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
              ID D+ V     + +  + F VLHG  GEDG VQ  LE+L++PY    IL+S+L+MD
Sbjct: 67  NETIDWDKKVAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLAMD 126

Query: 93  KMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           K+ +K+V+ S G+   P +       V     + +  ++ P   KP   GSS+GI   K 
Sbjct: 127 KITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLAYPVFTKPSNMGSSVGI--SKS 184

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYE 203
           +    L      ++ +  ++L+EQ V+  E+  G++G+  +  T   E+ V    FY Y+
Sbjct: 185 ENQEELRQALKLAFRYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVAFYDYD 243

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            KY   N T  +PAKI  D+   +++ A  A +AIG  G+SR DF +     ++F  E+N
Sbjct: 244 AKYIDNNITMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDFFYTDKG-EIFLNELN 302

Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             PG T  S++P +    G S+ +L+  +V+
Sbjct: 303 TMPGFTQWSMYPLLWDNMGISYPKLIERLVD 333


>gi|266620111|ref|ZP_06113046.1| D-alanine--D-alanine ligase [Clostridium hathewayi DSM 13479]
 gi|288868339|gb|EFD00638.1| D-alanine--D-alanine ligase [Clostridium hathewayi DSM 13479]
          Length = 354

 Score =  130 bits (328), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 87/260 (33%), Positives = 132/260 (50%), Gaps = 15/260 (5%)

Query: 49  LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
           +K D+ F VLHG FGEDG VQ +LEL  IPY   G+LASA+SMDK+ +K VV   GV   
Sbjct: 92  VKVDVVFPVLHGLFGEDGTVQGLLELARIPYVGCGVLASAVSMDKLYTKIVVDDLGVRQA 151

Query: 109 PSILVNRFTMDSQHLI--------SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160
             + V R  +     +        + P  +KP   GSS G  V + D    L+     + 
Sbjct: 152 AYVPVMRSDLGDMEAVVGRVEAKFTYPVFVKPSNAGSSKG--VARADSREELEAALYEAA 209

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK----SDFYSYELKYSSLNSTHVLP 216
            H  ++L+E+ + G E+ C V G   + V    V +    ++FY ++ KY + +S  V+ 
Sbjct: 210 KHDRKILVEEMIKGREIECAVFGGGLVPVEASGVGEILAAAEFYDFDAKYYNSDSRTVVN 269

Query: 217 AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPE 276
            ++P D    V+  A    +A+   G++R DF        VF  EIN  PG T +S++P 
Sbjct: 270 PELPGDAANTVREAAKAIFRAVDGYGLARVDFFVKDDGTVVF-NEINTLPGFTAISMYPM 328

Query: 277 MAAYAGYSFRELLLWMVEDA 296
           +   AG S  +L+  +V+ A
Sbjct: 329 LWEAAGVSKDQLVDRLVDHA 348


>gi|307127881|ref|YP_003879912.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae 670-6B]
 gi|6634574|emb|CAB64471.1| D-ala,D-ala ligase [Streptococcus pneumoniae]
 gi|306484943|gb|ADM91812.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae 670-6B]
          Length = 347

 Score =  130 bits (328), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 100/331 (30%), Positives = 161/331 (48%), Gaps = 43/331 (12%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKV----------------------------- 33
           +L GG S+EREVS+ S ++   A+    F V                             
Sbjct: 7   LLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDFIKTQEFSQTPGQEDRLMT 66

Query: 34  -SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
            + ID D+ V     + +  + F VLHG  GEDG VQ  LE+L++PY    IL+S+L+MD
Sbjct: 67  NATIDWDKKVAPSAIYEEEAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLAMD 126

Query: 93  KMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           K+ +K+V+ S G+   P +       V     + +  ++ P   KP   GSS+GI   K 
Sbjct: 127 KITTKRVLESTGIAQVPYVAIVEGDDVTAKIAEVEEKLTYPVFTKPSNMGSSVGI--SKS 184

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYE 203
           +    L      ++ +  ++L+EQ V+  E+  G++G+  +  T   E+ V    FY Y+
Sbjct: 185 ENQEELRQALKLAFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVAFYDYD 243

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            KY     T  +PAKI  D+   +++ A  A +AIG  G+SR DF +     ++F  E+N
Sbjct: 244 AKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDFFYTDKG-EIFLNELN 302

Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             PG T  S++P +    G S+ EL+  +V+
Sbjct: 303 TMPGFTQWSMYPLLWDNMGISYPELIERLVD 333


>gi|15903558|ref|NP_359108.1| D-alanyl-alanine synthetase A [Streptococcus pneumoniae R6]
 gi|116516832|ref|YP_816940.1| D-alanyl-alanine synthetase A [Streptococcus pneumoniae D39]
 gi|32171386|sp|Q8DNV5|DDL_STRR6 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|122278214|sp|Q04J98|DDL_STRP2 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|15459177|gb|AAL00319.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae R6]
 gi|116077408|gb|ABJ55128.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae D39]
          Length = 347

 Score =  130 bits (328), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 100/331 (30%), Positives = 161/331 (48%), Gaps = 43/331 (12%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQ--------------------------- 35
           +L GG S+EREVS+ S ++   A++   F V                             
Sbjct: 7   LLYGGRSAEREVSVLSAESVMRAVDYDRFTVKTFFISQSGDFIKTQEFSHAPGQEDRLMT 66

Query: 36  ---IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
              ID D+ V     + +  + F VLHG  GEDG VQ  LE+L++PY    IL+S+L+MD
Sbjct: 67  NETIDWDKKVAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLAMD 126

Query: 93  KMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           K+ +K+V+ S G+   P +       V     + +  ++ P   KP   GSS+GI   K 
Sbjct: 127 KITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLAYPVFTKPSNMGSSVGI--SKS 184

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYE 203
           +    L      ++ +  ++L+EQ V+  E+  G++G+  +  T   E+ V    FY Y+
Sbjct: 185 ENQEELRQALKLAFRYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVAFYDYD 243

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            KY     T  +PAKI  D+   +++ A  A +AIG  G+SR DF +     ++F  E+N
Sbjct: 244 AKYIDNKVTMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDFFYTDKG-EIFLNELN 302

Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             PG T  S++P +    G S+ EL+  +V+
Sbjct: 303 TMPGFTQWSMYPLLWENMGISYPELIERLVD 333


>gi|322614661|gb|EFY11590.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315996572]
 gi|322620180|gb|EFY17052.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-1]
 gi|322623474|gb|EFY20313.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-3]
 gi|322629228|gb|EFY26007.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-4]
 gi|322631948|gb|EFY28702.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-1]
 gi|322637314|gb|EFY34016.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-2]
 gi|322642000|gb|EFY38610.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 531954]
 gi|322646237|gb|EFY42751.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Montevideo str. NC_MB110209-0054]
 gi|322652496|gb|EFY48850.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Montevideo str. OH_2009072675]
 gi|322653341|gb|EFY49674.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Montevideo str. CASC_09SCPH15965]
 gi|322660510|gb|EFY56746.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 19N]
 gi|322664662|gb|EFY60855.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 81038-01]
 gi|322669285|gb|EFY65435.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Montevideo str. MD_MDA09249507]
 gi|322670831|gb|EFY66964.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 414877]
 gi|322678931|gb|EFY74986.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 366867]
 gi|322681959|gb|EFY77984.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 413180]
 gi|322685212|gb|EFY81209.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 446600]
 gi|323194440|gb|EFZ79635.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609458-1]
 gi|323197024|gb|EFZ82166.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556150-1]
 gi|323203349|gb|EFZ88374.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609460]
 gi|323206906|gb|EFZ91859.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 507440-20]
 gi|323210324|gb|EFZ95216.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556152]
 gi|323214566|gb|EFZ99317.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB101509-0077]
 gi|323223123|gb|EGA07466.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB102109-0047]
 gi|323223963|gb|EGA08257.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB110209-0055]
 gi|323230110|gb|EGA14230.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB111609-0052]
 gi|323233848|gb|EGA17937.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009083312]
 gi|323238458|gb|EGA22516.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009085258]
 gi|323244146|gb|EGA28155.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315731156]
 gi|323246306|gb|EGA30289.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2009159199]
 gi|323251932|gb|EGA35795.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008282]
 gi|323257929|gb|EGA41608.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008283]
 gi|323261058|gb|EGA44650.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008284]
 gi|323265012|gb|EGA48511.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008285]
 gi|323272575|gb|EGA55982.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008287]
          Length = 364

 Score =  130 bits (328), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 89/346 (25%), Positives = 167/346 (48%), Gaps = 55/346 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD--------------------- 39
           + ++ GG S+E EVSL S K    A++   F V  + +D                     
Sbjct: 6   VGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGIDKAGQWHVNDAENYLQNADDPA 65

Query: 40  ----RSVGLVLAHL--------------KP----DLAFNVLHGNFGEDGLVQAILELLEI 77
               R   + LA +              +P    D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  HIALRPSAISLAQVPGKHQHQLINAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVIK 131
           P+  S +L+SA  MDK  +K+++   G+ +   I + R    +      +  +  P  +K
Sbjct: 126 PFVGSDVLSSAACMDKDVAKRLLRDAGLNIASFITLTRTNRHAFSFAEVESRLGLPLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  +  +      +  +  ++H  ++++EQ + G E+ C V+G+ +   + 
Sbjct: 186 PANQGSSVGVSKVANEAQYQQAVALAFEFDH--KVVVEQGIKGREIECAVLGNDNPQAST 243

Query: 192 IA--VPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               V  S+FY+Y+ KY   N    V+PA+IP ++  +++ +A  A+Q +GC G++R D 
Sbjct: 244 CGEIVLNSEFYAYDTKYIDDNGAQVVVPAQIPSEVNDKIRAIAIQAYQTLGCAGMARVD- 302

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           +F     +V   EIN  PG T +S++P++   +G  + +L+  ++E
Sbjct: 303 VFLTADNEVVINEINTLPGFTNISMYPKLWQASGLGYTDLISRLIE 348


>gi|148560339|ref|YP_001259185.1| D-alanyl-alanine synthetase A [Brucella ovis ATCC 25840]
 gi|148371596|gb|ABQ61575.1| D-alanine--D-alanine ligase A [Brucella ovis ATCC 25840]
          Length = 366

 Score =  130 bits (328), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 96/343 (27%), Positives = 169/343 (49%), Gaps = 55/343 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           + VL GG S+E +VS+ S     +AL+ A ++   + V R+   +L+             
Sbjct: 21  IVVLFGGRSAEHDVSVLSATNVMNALDPAKYEAVPVFVTRAGQWLLSRFVNGALEKPSSG 80

Query: 50  --------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                     K D+ F VLHG  GEDG VQ + ++ ++P    G
Sbjct: 81  AELCLVPGGCGRAIVVPDAGAPYEADKIDIIFPVLHGLHGEDGAVQGLAQVAQVPLAGCG 140

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSL 139
           I  SA ++DK  +K++V+  G+    S+ + R  + +    +  +  P  IKP + GSS+
Sbjct: 141 IPGSANALDKDIAKRLVNEAGLSTAKSVTITREEVPAFSALEQALGLPIFIKPARQGSSV 200

Query: 140 GI--IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD--ASLDVTEIA-- 193
           G+  +V + D    +    S  + + D+LL E+++   E+ CGV+ D   +L V+     
Sbjct: 201 GVHKVVTEADYQAAM----SDGFTYDDKLLAEEFIQAREVECGVLEDEGGALFVSRAGEI 256

Query: 194 VPKSD--FYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
           VP     FYSY+ KY   + T + +PA++P  +  E++ +A  A + +GC  ++R DF F
Sbjct: 257 VPAESHCFYSYDAKYIDADGTEIKVPAELPEQVENEIRAIAAKAFRVLGCDSMARVDF-F 315

Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
               R++   EIN  PG T +S++ ++ A +G S+ E++  +V
Sbjct: 316 VTADRRIVLNEINTIPGFTDMSMYSKVMAVSGVSYPEIINRLV 358


>gi|296270752|ref|YP_003653384.1| D-alanine/D-alanine ligase [Thermobispora bispora DSM 43833]
 gi|296093539|gb|ADG89491.1| D-alanine/D-alanine ligase [Thermobispora bispora DSM 43833]
          Length = 386

 Score =  130 bits (328), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 86/273 (31%), Positives = 144/273 (52%), Gaps = 24/273 (8%)

Query: 37  DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRS 96
           ++ R++G V      D+ F +LHG FGEDG +Q +LE+  + Y  SG+LASA+ MDK   
Sbjct: 113 EIPRALGEV------DVVFPLLHGPFGEDGTIQGLLEMAGVRYVGSGVLASAIGMDKAYM 166

Query: 97  KQVVSSCGVPVCPSILV--NRFTMDSQHLISP------PYVIKPLKGGSSLGIIVIKKDQ 148
           K V+ + G+PV P ++V    + +D   ++        P  +KP + GSS GI   K   
Sbjct: 167 KLVLRASGLPVGPYVVVRDRDWRVDRARVLKEAGDLGWPVFVKPARAGSSQGI--TKVHD 224

Query: 149 SIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV---MGDA----SLDVTEIAVPKSDFYS 201
           +  L+    ++  H  ++L+E  + G E+ C V   +GD+    S+    +     +FY 
Sbjct: 225 AAGLEEAIEAAREHDPKVLVEAAIPGREVECAVLESLGDSPPEASVVGEVVVAEGHEFYD 284

Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
           +E KY         PA +P  + + V+ LA  A +A+GC G++R DF + P S ++   E
Sbjct: 285 FEAKYFDGGMELHAPADLPESVSERVRALAVQAFEALGCEGLARVDFFYTP-SGELIVNE 343

Query: 262 INVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           IN  PG T  S+ P++ A  G  + +L+  +++
Sbjct: 344 INTMPGFTAQSVAPKLWAATGLPYPQLIDRLIQ 376


>gi|89099476|ref|ZP_01172352.1| D-alanylalanine synthetase [Bacillus sp. NRRL B-14911]
 gi|89085862|gb|EAR64987.1| D-alanylalanine synthetase [Bacillus sp. NRRL B-14911]
          Length = 357

 Score =  130 bits (328), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 95/341 (27%), Positives = 159/341 (46%), Gaps = 53/341 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGF------------------------KVSQI 36
           + +L GG S+E +VS+ +  A   AL+   F                         V Q+
Sbjct: 5   LGLLYGGKSAEHKVSMQTALAVIKALDLEKFDIYPVYITEEGEWVKGPMLEAPAESVKQL 64

Query: 37  DVDRSVGLVLAHLKP-----------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
           +  +   +  A L P           D+ F +LHG  GEDG VQ +LELL +PY  +G+L
Sbjct: 65  EFSQGEAMSPAALAPAMFKSAEESSFDVIFPLLHGPNGEDGTVQGMLELLNLPYVGNGVL 124

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGG 136
           AS+  MDK+  K + +  G+P    +   R              +  +  P  +KP   G
Sbjct: 125 ASSAGMDKVIMKNIFAQAGLPQVNYVWFVRSEWQKAGETAYEKVEEELGYPCFVKPANLG 184

Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG--DASLDVTEIAV 194
           SS+GI      + +     ++  ++   ++++E+ V   E+  GV+G  +    V    V
Sbjct: 185 SSVGISKCTNREELAAAFEEAFQFDR--KIIVEEGVTAREIELGVLGNDEPECSVAGEIV 242

Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
           PK DFY Y+ KY   ++  ++PA+I  + Y  +  ++  A +A+ C G+ R+DF    L+
Sbjct: 243 PKKDFYDYKAKYEDGDTAMIIPAEITEEEYSTLNEMSIRAFKALDCSGLVRADFF---LT 299

Query: 255 R--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           R  KV   E+N  PG TP S+FP +  + G  + +L+  +V
Sbjct: 300 RDGKVMINEVNTMPGFTPFSMFPLLWKHTGVEYPQLIERLV 340


>gi|307707045|ref|ZP_07643842.1| D-alanine--D-alanine ligase [Streptococcus mitis SK321]
 gi|307617571|gb|EFN96741.1| D-alanine--D-alanine ligase [Streptococcus mitis SK321]
          Length = 347

 Score =  130 bits (328), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 101/330 (30%), Positives = 158/330 (47%), Gaps = 41/330 (12%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQ--------------------------- 35
           +L GG S+EREVS+ S ++   A+    F V                             
Sbjct: 7   LLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDFIKTQEFSQTPGQEDRLMT 66

Query: 36  ---IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
              ID D+ V     + +  + F VLHG  GEDG VQ  LE+L++PY    IL+S+L+MD
Sbjct: 67  NETIDWDKQVAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLAMD 126

Query: 93  KMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           K+ +K+V+ S G+   P +       V     + +  ++ P   KP   GSS+GI   K 
Sbjct: 127 KITTKRVLESVGIAQVPYVAIVEGDDVTSKIAEVEEKLTYPVFTKPSNMGSSVGI--SKS 184

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG--DASLDVTEIAVPKSDFYSYEL 204
           +    L      ++ +  ++L+EQ V+  E+  G++G  DA   +    V    FY Y+ 
Sbjct: 185 ENQEELRQALKLAFQYDSRVLVEQGVNAREIEVGLLGNYDAKSTLPGEVVKDVAFYDYDA 244

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           KY     T  +PAKI  D+   +++ A  A +AIG  G+SR DF +     +VF  E+N 
Sbjct: 245 KYIDNKITMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDFFYTD-KGEVFLNELNT 303

Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            PG T  S++P +    G S+ EL+  +V+
Sbjct: 304 MPGFTQWSMYPLLWDNMGISYPELIERLVD 333


>gi|315022540|gb|EFT35567.1| D-alanyl-alanine synthetase A [Riemerella anatipestifer RA-YM]
          Length = 318

 Score =  130 bits (328), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 97/321 (30%), Positives = 163/321 (50%), Gaps = 35/321 (10%)

Query: 5   MGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DRSVGL 44
           MGG S E +VSL SG+    +L+   + V ++ V                    D SV L
Sbjct: 1   MGGYSDEYKVSLKSGQLIYDSLDRDLYNVYKVVVLKEGWFYLDENEAKLPIQKGDFSVNL 60

Query: 45  VLAH-LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103
                L+ D+ FN++HG  GE+G++QA  + +   YT      SAL+ +K  +  V++  
Sbjct: 61  PSGEVLRFDVCFNIIHGTPGENGVLQAYWDAIGQKYTGCDFYQSALTFNKKDTLAVLAKY 120

Query: 104 GVPVCPSILVNR-FTMDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
           G+P   S  + +    D   +I+    P  +KP + GSSLGI  +K+       L    +
Sbjct: 121 GIPSAKSFYIKKGEAYDKDKIINELKLPLFVKPNQSGSSLGISKVKEVSEFEAAL--EKA 178

Query: 160 WNHGDQLLIEQYVDGIELTCGVM---GDA-SLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215
           +   D++L+E ++DG+E++ GV+   G+   L +TEI +P+++F+ YE KY    S  ++
Sbjct: 179 FLEDDEVLVESFLDGMEVSVGVLDYKGETIVLGITEI-IPETEFFDYEAKYQGA-SQEII 236

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275
           PA++       V+ +A  A+  +G +G SRS+++   +    + LE+N  PG +P SI P
Sbjct: 237 PARLDEATRLRVEEVAKRAYNYLGMKGFSRSEYII--MDGVPYMLEMNTNPGFSPASILP 294

Query: 276 EMAAYAGYSFRELLLWMVEDA 296
           + A   G S  +L    VE A
Sbjct: 295 QQARIYGISITDLCGNEVEKA 315


>gi|297171472|gb|ADI22472.1| D-alanine-D-alanine ligase and related ATP-grasp enzymes
           [uncultured gamma proteobacterium HF0500_07A21]
          Length = 363

 Score =  130 bits (328), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 99/347 (28%), Positives = 168/347 (48%), Gaps = 59/347 (17%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR----------SVGLVLAHLK 50
           + +L GG S+E EVS+ S ++  +A++   + V    +D+          S  L L+   
Sbjct: 6   VVLLFGGRSAEHEVSVVSARSVYAAIDREQYDVVLAGIDQQGRWYFGGKDSESLSLSTFV 65

Query: 51  PD----------------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
           PD                            + F +LHG +GEDG VQ +LEL  + Y  +
Sbjct: 66  PDEQVPARLSTTGPYLVSEDGNYLPGSEFDVVFPLLHGPYGEDGTVQGLLELAGLAYVGA 125

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRF-----------TMDSQHLISPPYVIK 131
           G+ ASA+ MDK+ ++ + ++ G+P     ++ R             ++ +H    P  +K
Sbjct: 126 GVAASAVGMDKVLARAIFTASGLPQTQYSVIMRSDWRRAQASVLERLEGEH--DYPLFVK 183

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI-ELTCGVMGD---ASL 187
           P   GSS+GI      Q +   L  +S ++   +L+IE+ V+   EL C V+G+    + 
Sbjct: 184 PANLGSSVGISKAHDRQGLQAGLELASQYD--TKLIIERSVENARELECAVLGNEYPKAS 241

Query: 188 DVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
            V EI +P ++FY Y  KY    S  V+PA +     + ++ LA    +AI C G++R D
Sbjct: 242 GVGEI-IPGAEFYDYTTKYIDDQSELVVPAVLEKSETESIRELAIRTFKAIDCSGLARVD 300

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           F   P    V   EIN  PG TP+S++P++ A AG ++ +L+  +++
Sbjct: 301 FFMRP-DGSVLVNEINTMPGFTPISMYPKLWAAAGVAYGDLIDRLIQ 346


>gi|58336484|ref|YP_193069.1| D-alanyl-alanine synthetase A [Lactobacillus acidophilus NCFM]
 gi|227903036|ref|ZP_04020841.1| d-alanine-d-alanine ligase [Lactobacillus acidophilus ATCC 4796]
 gi|81311548|sp|Q5FMN6|DDL_LACAC RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|58253801|gb|AAV42038.1| d-alanine-d-alanine ligase [Lactobacillus acidophilus NCFM]
 gi|227869210|gb|EEJ76631.1| d-alanine-d-alanine ligase [Lactobacillus acidophilus ATCC 4796]
          Length = 360

 Score =  130 bits (328), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 99/341 (29%), Positives = 160/341 (46%), Gaps = 51/341 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASAL--------------------EDAGFKV-----SQ 35
           + ++ GG SSE EVS+ SG     A+                    E+  FKV      Q
Sbjct: 7   VGLIFGGNSSEYEVSIVSGHNIYKAIDKDKFDVHPIWITNEGYFASEEESFKVLEDPSYQ 66

Query: 36  IDVDRSVGLV--LAHLKP----DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
           ++    V  +  +  LK     D+ F ++HGN GEDG++Q +  L+  P+    +LA+A 
Sbjct: 67  VENPHKVNNISNIIELKNLPEIDVFFPIVHGNLGEDGVLQGLFRLMNKPFVGDDVLAAAA 126

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPY-----------VIKPLKGGSS 138
           +MDK  +K +    GVPV   I + RF  D ++     Y            +KP   GSS
Sbjct: 127 TMDKEFTKILAQRVGVPVADWISIKRFEYDDKNNDKLNYEKVAEKLGHDMFVKPSNQGSS 186

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS---LDVTEIAVP 195
           +G+  +    +         ++ + D++L+E+ V G E+   V+G+       V +I   
Sbjct: 187 VGVNHVT--NAEEYAAALEEAFKYDDKVLVEETVPGTEVETAVLGNDKPIVAGVGQITNA 244

Query: 196 KSDFYSYELKYSSLNSTHVL--PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
           K  FY+YE KY   NST  L  PA +P DI   V+  A   ++   C G++R D +  P 
Sbjct: 245 KGSFYTYENKYDD-NSTSKLQIPADLPQDIVDTVRENARKVYEITECSGMARIDSMLTP- 302

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             KV   E+N  PG T +S++P++   AG  + EL+  +++
Sbjct: 303 DGKVVLTEVNALPGFTNISMYPKLFEEAGIPYTELITRLIQ 343


>gi|319947394|ref|ZP_08021626.1| D-alanine-D-alanine ligase [Streptococcus australis ATCC 700641]
 gi|319746334|gb|EFV98595.1| D-alanine-D-alanine ligase [Streptococcus australis ATCC 700641]
          Length = 348

 Score =  130 bits (328), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 99/334 (29%), Positives = 162/334 (48%), Gaps = 45/334 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQ------------------------- 35
           + +L GG S+EREVS+ S ++   A+    + V                           
Sbjct: 6   IVLLYGGRSAEREVSVLSAESVMRAINYDKYSVETYFITQAGDFIKTQTFEEKPAETERL 65

Query: 36  -----IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
                ID D        + +  + F VLHG  GEDG VQ  LE+L++PY    IL+S+++
Sbjct: 66  MTNETIDWDAKATPSSIYQEGAVVFPVLHGPMGEDGSVQGFLEVLKLPYVGCDILSSSVA 125

Query: 91  MDKMRSKQVVSSCGVPVCPSILV-------NRFTMDSQHLISPPYVIKPLKGGSSLGIIV 143
           MDK+ +K+V+ S G+P  P + V        + T+  + L  P +  KP   GSS+GI  
Sbjct: 126 MDKITTKRVLESAGIPQVPYVAVLEGDDLEAKITLIEKELTYPVFT-KPSNMGSSVGI-- 182

Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFY 200
            K +    L      ++ +  ++L+EQ V   E+  G++G+  +  T   E+ V    FY
Sbjct: 183 SKAENQAELRKSLELAFKYDSRVLVEQGVVAREIEVGLLGNYDVKSTLPGEV-VKDVAFY 241

Query: 201 SYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260
            YE KY     T  +PA+IP ++   ++  A LA +AIG +G+SR DF +      ++  
Sbjct: 242 DYEAKYIDNKITMAIPAEIPAEVAATMRHNAELAFRAIGGKGLSRCDFFYTE-DGGIYLN 300

Query: 261 EINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           E+N  PG T  S++P +    G ++ +L+  +VE
Sbjct: 301 ELNTMPGFTQWSMYPLLWDNMGLAYPDLIERLVE 334


>gi|315654076|ref|ZP_07906992.1| D-alanine-D-alanine ligase A [Lactobacillus iners ATCC 55195]
 gi|315488772|gb|EFU78418.1| D-alanine-D-alanine ligase A [Lactobacillus iners ATCC 55195]
          Length = 366

 Score =  130 bits (328), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 98/336 (29%), Positives = 163/336 (48%), Gaps = 51/336 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALE------------DAGFKVSQID----------- 37
           + ++ GG SSE EVS+ SG+    A++            + GF  S  D           
Sbjct: 13  VGLIFGGNSSEYEVSIISGRNIYKAIDKEKYDVYPMWITNTGFLASDEDSRKVLEDPSYQ 72

Query: 38  ------VDRSVGLVLAHLKP--DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
                 V     ++    +P  D+ F ++HGN GEDG +Q +L +L+ P+    +LA+A+
Sbjct: 73  IENPHNVTNISNVIELSNRPEIDVFFPIVHGNLGEDGCLQGLLRILDKPFVGDDVLAAAI 132

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYV---------IKPLKGGSS 138
           +MDK  +K +    GVPV   I + RF  +      +S  YV         +KP   GSS
Sbjct: 133 TMDKELNKIMAQRAGVPVADWISIKRFEYNDAKNEKLSYDYVSQKLGTDLFVKPSNQGSS 192

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVP 195
           +GI  +         L +  ++ + D++L+E+ + G E+   V+G+    V+   +I   
Sbjct: 193 VGISHVTSAADYEKALAE--AFKYDDKVLVEETIKGTEVETAVLGNDDAIVSGVGQITNA 250

Query: 196 KSDFYSYELKYSSLNSTHVL--PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
           +  +YSYE KY+  NST  L  PA +P +I + V+  A   + A  C G++R D +    
Sbjct: 251 QGSWYSYENKYND-NSTSKLQIPADLPAEIVETVRSQALKVYHATECSGLARVDSMLSS- 308

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
             KV + E+N  PG T +S++P++    G S+ EL+
Sbjct: 309 DNKVIFNELNSLPGFTNISMYPKLFEQVGISYTELI 344


>gi|160915858|ref|ZP_02078066.1| hypothetical protein EUBDOL_01880 [Eubacterium dolichum DSM 3991]
 gi|158432334|gb|EDP10623.1| hypothetical protein EUBDOL_01880 [Eubacterium dolichum DSM 3991]
          Length = 354

 Score =  130 bits (328), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 81/256 (31%), Positives = 130/256 (50%), Gaps = 17/256 (6%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D  F VLHG  GEDG +Q + EL  IPY   G ++S++ MDK  +  V+ +  VP  P +
Sbjct: 99  DCIFPVLHGKNGEDGTIQGLFELSGIPYVGCGHMSSSICMDKEMTHIVLENAKVPCAPYL 158

Query: 112 LV-NRFTMDSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
            V     MD + +          P  IKP   GSS GI  +   +     L  +   +  
Sbjct: 159 CVYEEKDMDYEAVYQEAKAKLGLPIFIKPANAGSSYGISKLDSFEGFEAALKDAFYHDGK 218

Query: 164 DQLLIEQYVDGIELTCGVMGDASL-----DVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            ++++E  ++G E+ C VMG+  L     D  E ++P   F+ YE KY  ++S    PA+
Sbjct: 219 GKVILETTIEGFEIGCAVMGNRELFAGNVDEIETSLP---FFDYEGKYQMVDSHIYCPAR 275

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278
           I  ++ +E + LA  A++A+ C+G++R D    P   ++   E+N  PG T  S +P M 
Sbjct: 276 ISKELIEEARTLALRAYKALNCKGMTRVDMFKTP-DDQILINEVNTIPGFTDTSRYPTMM 334

Query: 279 AYAGYSFRELLLWMVE 294
             AG +F +L+  +V+
Sbjct: 335 KEAGIAFSDLIDRLVD 350


>gi|308172324|ref|YP_003919029.1| D-alanyl-D-alanine ligase A [Bacillus amyloliquefaciens DSM 7]
 gi|307605188|emb|CBI41559.1| D-alanyl-D-alanine ligase A [Bacillus amyloliquefaciens DSM 7]
 gi|328552135|gb|AEB22627.1| D-alanyl-alanine synthetase A [Bacillus amyloliquefaciens TA208]
 gi|328910407|gb|AEB62003.1| D-alanyl-D-alanine ligase A [Bacillus amyloliquefaciens LL3]
          Length = 361

 Score =  130 bits (328), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 85/255 (33%), Positives = 140/255 (54%), Gaps = 16/255 (6%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-- 109
           D+ F +LHG  GEDG +Q +LELL +PY  +G+LAS+  MDK+  K + +  G+P     
Sbjct: 95  DVVFPLLHGPNGEDGTIQGLLELLNVPYVGNGVLASSAGMDKVIMKHLFAQAGLPQAKYA 154

Query: 110 SILVNRF--TMDS-----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
           + L   +  T DS     +  +  P  +KP   GSS+GI   +  +   L+     ++ +
Sbjct: 155 AFLKKDWKQTPDSCLQQVEEELGYPCFVKPANLGSSVGISKCRNREE--LEKAFELAFEY 212

Query: 163 GDQLLIEQYVDGIELTCGVMGDASLD---VTEIAVPKSDFYSYELKYSSLNSTHVLPAKI 219
             ++++E+ + G E+  GV+G+       V EIA PK+DFY Y+ KY   ++  ++PA++
Sbjct: 213 DRKIVVEEGIAGREIEIGVLGNDEPKCSAVGEIA-PKTDFYDYKAKYEDGDTDLMIPAQV 271

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279
             + Y E+  +A  A +AI   G+ R+DF F     +V   E+N  PG TP S+FP +  
Sbjct: 272 TDEQYAEISEMAIKAFKAIDGSGLVRADF-FLTNDGQVLINEVNTMPGFTPFSMFPLLWK 330

Query: 280 YAGYSFRELLLWMVE 294
            AG  + +L+  +VE
Sbjct: 331 EAGVDYSDLIEQLVE 345


>gi|294638206|ref|ZP_06716460.1| D-alanine--D-alanine ligase A [Edwardsiella tarda ATCC 23685]
 gi|291088642|gb|EFE21203.1| D-alanine--D-alanine ligase A [Edwardsiella tarda ATCC 23685]
          Length = 409

 Score =  130 bits (328), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 99/350 (28%), Positives = 167/350 (47%), Gaps = 58/350 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS------------------V 42
           + ++ GG S E EVSL S K   +A++   F V  I +D+                    
Sbjct: 47  VGIVFGGKSCEHEVSLQSAKNIVAAIDHTRFDVMLIGIDKQGYWYRCPEHGYLSHEDDPQ 106

Query: 43  GLVLAHLKP--------------------------DLAFNVLHGNFGEDGLVQAILELLE 76
            + L H                             D+ F ++HG  GEDG +Q +L++L 
Sbjct: 107 HIALNHASAHRLAVLPGAHSGQLIDTVTGESLPSLDVIFPIVHGTQGEDGCLQGMLKILN 166

Query: 77  IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD-------SQHLISPPYV 129
           +P+  S I+ SA  MDK   K+++   G+PV P + + R T         S+ L S  +V
Sbjct: 167 LPFVGSDIIGSAACMDKDICKRLLRDAGLPVTPFVTLTRDTQADYDYETLSRQLGSTLFV 226

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD--ASL 187
            KP   GSS+G+  ++  +     + ++  ++H  +++IE  V G E+ C ++G+  A  
Sbjct: 227 -KPANQGSSVGVSKVRNAEEYARAIAEALRFDH--KVIIELGVVGREIECAILGNEAAQA 283

Query: 188 DVTEIAVPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRS 246
            V    +  SDFYSY+ KY S      V+PA++  +  + V+++A  A QA+ CRG++R 
Sbjct: 284 SVCGEIILHSDFYSYDSKYISAQGAQVVVPAQMTPESSERVRQIALQAFQALECRGLARV 343

Query: 247 DFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           D +F     +V   EIN  PG T +S++P++    G  +  L+  ++E A
Sbjct: 344 D-VFLTEEGEVIINEINTLPGFTNISMYPKLWQACGIDYPTLITRLIEFA 392


>gi|253681038|ref|ZP_04861841.1| D-alanine--D-alanine ligase [Clostridium botulinum D str. 1873]
 gi|253562887|gb|EES92333.1| D-alanine--D-alanine ligase [Clostridium botulinum D str. 1873]
          Length = 343

 Score =  130 bits (327), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 78/262 (29%), Positives = 143/262 (54%), Gaps = 15/262 (5%)

Query: 45  VLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCG 104
           +L + + D+ F V+HG +GEDG +Q + +LL IP    G+++SA+ MDK+ +K V+ + G
Sbjct: 77  ILFNREVDVVFPVMHGLYGEDGTIQGLCKLLNIPCVGPGVMSSAVCMDKVYTKYVLENFG 136

Query: 105 VPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
           +     ++V      +         ++ +     IKP   GSS+GI      + +   L 
Sbjct: 137 IKQADYVVVTAHDYKTIKEDILTKIENKLGYDVFIKPSNSGSSVGISKAHNREELEKGLS 196

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNST 212
           ++  ++   ++L+E  ++  E+   V+G+         EI VP ++FY YE KYS+  S 
Sbjct: 197 EALKFDR--KILVETALNAREIEVAVLGNDEPKAATPGEI-VPANEFYDYEAKYSNAESK 253

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
            +LPA +  +  ++V+ LA   ++ + C G+SR DFL D  + +V+  EIN  PG T +S
Sbjct: 254 LLLPANLTKEKLEKVKALAVRIYKMLDCAGMSRVDFLVDKETEEVYLNEINTIPGFTKIS 313

Query: 273 IFPEMAAYAGYSFRELLLWMVE 294
           ++P+M    G ++ +L+  ++E
Sbjct: 314 MYPKMWQAEGKAYGDLISEIIE 335


>gi|238764550|ref|ZP_04625497.1| D-alanine--D-alanine ligase [Yersinia kristensenii ATCC 33638]
 gi|238697252|gb|EEP90022.1| D-alanine--D-alanine ligase [Yersinia kristensenii ATCC 33638]
          Length = 359

 Score =  130 bits (327), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 96/346 (27%), Positives = 162/346 (46%), Gaps = 59/346 (17%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR---------------------- 40
           ++ GG S+E EVSL S K    A++   F+V+ + +D+                      
Sbjct: 1   MIFGGKSAEHEVSLQSAKNIVDAIDKEKFEVTLLGIDKQGKWHINDASSYLLNAEHPALI 60

Query: 41  -------SVGLVL--------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPY 79
                  +V L+L              A  + D+ F ++HG  GEDG +Q +L +  IP+
Sbjct: 61  SLNHSNKNVALILGQESQQLIATDNAAALAQLDVIFPIVHGTLGEDGSLQGLLRMANIPF 120

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVIKPL 133
             SG++ SA+SMDK  +K+++   G+ + P I + R   DS         +  P  IKP 
Sbjct: 121 VGSGVVGSAVSMDKDITKRLLRDAGLNIAPFITLTRGNKDSYCFEKITEKLGLPLFIKPA 180

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD----ASLDV 189
             GSS+G+  ++        +  +  ++H  ++L+E  + G E+ C VMG+    ASL  
Sbjct: 181 NQGSSVGVSKVRNAAEYEQAVALAFDFDH--KVLVESAIVGREIECAVMGNDNPQASL-C 237

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
            E+ +   +FYSY+ KY +     V +PA I       ++ +A    +A+ C G++R D 
Sbjct: 238 GEVVI-SDEFYSYDTKYINETGAQVIIPAAIDSAASDNIRTVALATFRALECCGMARVDV 296

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
              P    V   EIN  PG T +S++P++    G    EL+  ++E
Sbjct: 297 FLTP-DNHVIINEINTLPGFTNISMYPKLWRATGVGSTELITTLIE 341


>gi|294852606|ref|ZP_06793279.1| D-alanine-D-alanine ligase [Brucella sp. NVSL 07-0026]
 gi|294821195|gb|EFG38194.1| D-alanine-D-alanine ligase [Brucella sp. NVSL 07-0026]
          Length = 348

 Score =  130 bits (327), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 97/343 (28%), Positives = 168/343 (48%), Gaps = 55/343 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           + VL GG S+E +VS+ S     +AL+ A ++   + V R+   +L+             
Sbjct: 3   IVVLFGGRSAEHDVSVLSATNVMNALDPAKYEAVPVFVTRAGQWLLSRFVNGALEKPSSG 62

Query: 50  --------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                     K D+ F VLHG  GEDG VQ + ++  +P    G
Sbjct: 63  AELCLVPGGCGRAIVVPDAGAPYEADKIDIIFPVLHGLHGEDGAVQGLAQVARVPLAGCG 122

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSL 139
           I  SA ++DK  +K++V+  G+    S+ + R  + +    +  +  P  IKP + GSS+
Sbjct: 123 IPGSANALDKDIAKRLVNEAGLSTAKSVTITRQEVPAFSALEQALGLPIFIKPARQGSSV 182

Query: 140 GI--IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD--ASLDVTEIA-- 193
           G+  IV + D    +    S  + + D+LL E+++   E+ CGV+ D   +L V+     
Sbjct: 183 GVHKIVTEADYQAAM----SDGFTYDDKLLAEEFIQAREVECGVLEDEGGALFVSRAGEI 238

Query: 194 VPKSD--FYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
           VP     FYSY+ KY   + T + +PA++P  +  E++ +A  A + +GC  ++R DF F
Sbjct: 239 VPAESHCFYSYDAKYIDADGTEIKVPAELPEQVENEIRAIAAKAFRVLGCDSMARVDF-F 297

Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
               R++   EIN  PG T +S++ ++ A +G S+ E++  +V
Sbjct: 298 VTADRRIVLNEINTIPGFTDMSMYSKVMAVSGVSYPEIINRLV 340


>gi|282859072|ref|ZP_06268204.1| D-ala D-ala ligase N-terminal domain protein [Prevotella bivia
           JCVIHMP010]
 gi|282588152|gb|EFB93325.1| D-ala D-ala ligase N-terminal domain protein [Prevotella bivia
           JCVIHMP010]
          Length = 332

 Score =  130 bits (327), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 99/331 (29%), Positives = 158/331 (47%), Gaps = 44/331 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---DRSVGLVLAHLKP------ 51
           +A++ GG SSE +VSL S +   S  +   + +  +DV   D  V L      P      
Sbjct: 8   IAIVCGGDSSEHDVSLRSAQGIYSFFDKERYNIYIVDVKGTDWYVNLPNGDTAPIDKNDF 67

Query: 52  -----------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
                      D A+  +HG  GE+G++Q   EL+ +PY+ SG+L  A++ DK      +
Sbjct: 68  SFVFEGKAVVFDYAYITIHGQPGENGVMQGYFELIHLPYSTSGVLVEAMTFDKFVLNNYL 127

Query: 101 SSCGVPVCPSILVNRFTMDSQHLISP----PYVIKPLKGGSSLGIIVIKK-DQSIP---L 152
              G  V  SILV R    ++  I      P  +KP   GSS G+  +K  DQ  P   +
Sbjct: 128 RGFGFNVADSILVRRGETINEKEIEERLGMPCFVKPAADGSSFGVSKVKNADQLAPALRV 187

Query: 153 DLLQSSSWNHGDQLLIEQYVDGIELTCGVM-----GDASLDVTEIAVPKSDFYSYELKYS 207
             ++SS       ++IE+++DG+E++ G       G      TE+ V K++F+ Y  KY+
Sbjct: 188 AFMESSD------VMIEKFLDGMEISQGAYKTKDKGVVVFPATEV-VTKNEFFDYNAKYN 240

Query: 208 SLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF--DPLSRKVF-WLEINV 264
                 + PA++  +  K+V +L    ++ +   GI R D++   D   + V   LEIN 
Sbjct: 241 G-EVEEITPARMNPETAKKVAKLTAQIYEILHANGIIRIDYIISKDAEGKDVINMLEINT 299

Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
            PGMTP S  P+    AG   +E+L  +VE+
Sbjct: 300 TPGMTPTSFIPQQVRAAGLDIKEVLTEIVEN 330


>gi|227894248|ref|ZP_04012053.1| D-alanine-D-alanine ligase [Lactobacillus ultunensis DSM 16047]
 gi|227863968|gb|EEJ71389.1| D-alanine-D-alanine ligase [Lactobacillus ultunensis DSM 16047]
          Length = 360

 Score =  130 bits (327), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 98/341 (28%), Positives = 161/341 (47%), Gaps = 51/341 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI---------DVDRSVGLV------ 45
           + ++ GG SSE EVS+ SG     A++   F V  I         D   S  ++      
Sbjct: 7   VGLIFGGNSSEYEVSIVSGHNIYKAIDKEKFDVHPIWITNEGYFADEKESFKVLEDPSYQ 66

Query: 46  ---------------LAHL-KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
                          L +L + D+ F ++HGN GEDG++Q +  L+  P+    +LA+A+
Sbjct: 67  VKNPHKVHNISNLIELENLPEIDVFFPIVHGNLGEDGVLQGLFRLMNKPFVGDDVLAAAV 126

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPY-----------VIKPLKGGSS 138
           +MDK  +K +    GVPV   I + RF  + ++     Y            +KP   GSS
Sbjct: 127 TMDKEFTKILAQRVGVPVADWISIKRFEYNDKNNDKLDYEKVAEKLGRDMFVKPSNQGSS 186

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS---LDVTEIAVP 195
           +G+  +         L +  ++ + D++L+E+ V G E+   V+G+       V +I   
Sbjct: 187 VGVSHVTNAAEYTAALKE--AFKYDDKVLVEETVPGTEVETAVLGNDKPIVAGVGQITNA 244

Query: 196 KSDFYSYELKYSSLNSTHVL--PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
           K  FY+YE KY   NST  L  PA +P +I   V+  A   ++   C G++R D +  P 
Sbjct: 245 KGSFYTYENKYDD-NSTSKLQIPADLPKEIIDTVRANARKVYEVTECSGMARIDSMLTP- 302

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             KV   E+N  PG T +S++P++   AG  + EL+  ++E
Sbjct: 303 GGKVVLTEVNALPGFTNISMYPKLFEEAGVPYTELITRLIE 343


>gi|296171291|ref|ZP_06852695.1| D-alanine-D-alanine ligase [Mycobacterium parascrofulaceum ATCC
           BAA-614]
 gi|295894259|gb|EFG74016.1| D-alanine-D-alanine ligase [Mycobacterium parascrofulaceum ATCC
           BAA-614]
          Length = 363

 Score =  130 bits (327), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 93/275 (33%), Positives = 145/275 (52%), Gaps = 20/275 (7%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           + +    G VLA +  D+ F VLHG +GEDG +Q +LEL  +PY  +G+LASA  MDK  
Sbjct: 87  VSLSTGAGEVLASV--DVVFPVLHGPYGEDGTIQGLLELAGVPYVGAGVLASAAGMDKEF 144

Query: 96  SKQVVSSCGVPVCPSILV--NRFTM--DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
           +K++  + G+PV    ++  +R T+  D    +  P  +KP +GGSS+G+  +       
Sbjct: 145 TKKLFVAEGLPVGDYAVLRPSRSTLRPDECERLGLPVFVKPARGGSSIGVTRVSSWDD-- 202

Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGV--MGDASLDVT---EIAVP-----KSDFYS 201
           L    + +  H  ++++E  + G E+ CGV  M D S++ +   EI V      +  FY 
Sbjct: 203 LAAAVAVARRHDPKVIVEAAITGREVECGVLEMPDGSVEASTLGEIRVAGVRGREDSFYD 262

Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
           +  KY    +   +PAK+  DI   ++ LA  A +AI C+G++R DF            E
Sbjct: 263 FATKYLDDAAELDVPAKVDDDIADAIRDLAIRAFKAIDCQGLARVDFFL--TDDGPVLNE 320

Query: 262 INVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           IN  PG T +S++P M A +G  +  LL  MVE A
Sbjct: 321 INTMPGFTTISMYPRMWAASGVDYPTLLATMVETA 355


>gi|297182068|gb|ADI18242.1| d-alanine-d-alanine ligase and related ATP-grasp enzymes
           [uncultured gamma proteobacterium HF0200_40H22]
          Length = 362

 Score =  130 bits (327), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 105/342 (30%), Positives = 172/342 (50%), Gaps = 53/342 (15%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKV---------------------SQIDVDRS 41
           +L GG S+E EVS+ S ++   A++   ++V                      Q DV  +
Sbjct: 8   LLFGGQSAEHEVSVVSARSVYQAIDTNRYEVVLAGISRTGQWFLQDSKASLLEQSDVSNA 67

Query: 42  VGL--VLAHLKPDL-----------AFNV----LHGNFGEDGLVQAILELLEIPYTHSGI 84
            GL   LA  + DL           +F+V    LHG  GEDG VQ +LEL +  Y  +G+
Sbjct: 68  NGLPVQLAAGQRDLVSLDGMPVGTGSFDVVLPLLHGPRGEDGSVQGLLELADAAYVGAGV 127

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVNR--FTMDSQHLISP-------PYVIKPLKG 135
            ASA+ MDK  ++ V +  G+     +++ R  ++ D Q ++         P  +KP+  
Sbjct: 128 AASAVGMDKELARAVFAHAGLRQTEYLVIRRSAWSADRQAMLEDIEAKLRYPLFVKPVNL 187

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI-ELTCGVMG--DASLDVTEI 192
           GSS+GI      +S+   +  ++S++   ++++E  V+   EL C V+G  D    V   
Sbjct: 188 GSSIGISKAHDTKSLESAIDLAASYDV--KMMVETSVENARELECAVLGNDDPKASVIGE 245

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            +P ++FY Y  KY    S  ++PA++P  I  E+QR++  A +AI C G+ R DFL  P
Sbjct: 246 IIPGAEFYDYTTKYIDDRSQLIVPAELPESISAEIQRMSVDAFRAIDCAGLGRVDFLLAP 305

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            S  +F  EIN  PG TP+S++P +   +G  + EL+  ++E
Sbjct: 306 -SGDIFLNEINTMPGFTPISMYPRLWQASGIPYPELINELIE 346


>gi|168491447|ref|ZP_02715590.1| D-alanine--D-alanine ligase (D-alanylalanine
           synthetase)(D-Ala-D-Ala ligase) [Streptococcus
           pneumoniae CDC0288-04]
 gi|183574225|gb|EDT94753.1| D-alanine--D-alanine ligase (D-alanylalanine
           synthetase)(D-Ala-D-Ala ligase) [Streptococcus
           pneumoniae CDC0288-04]
          Length = 347

 Score =  130 bits (327), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 100/331 (30%), Positives = 161/331 (48%), Gaps = 43/331 (12%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQ--------------------------- 35
           +L GG S+EREVS+ S ++   A++   F V                             
Sbjct: 7   LLYGGRSAEREVSVLSAESVMRAVDYDRFTVKTFFISQSGDFIKTQEFSHAPGQEDRLMT 66

Query: 36  ---IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
              ID D+ V     + +  + F VLHG  GEDG VQ  LE+L++PY    IL+S+L+MD
Sbjct: 67  NETIDWDKKVAPSAIYEEGAVVFPVLHGPVGEDGSVQGFLEVLKMPYVGCNILSSSLAMD 126

Query: 93  KMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           K+ +K+V+ S G+   P +       V     + +  ++ P   KP   GSS+GI   K 
Sbjct: 127 KITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLAYPVFTKPSNMGSSVGI--SKS 184

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYE 203
           +    L      ++ +  ++L+EQ V+  E+  G++G+  +  T   E+ V    FY Y+
Sbjct: 185 ENQEELRQALKLAFRYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVAFYDYD 243

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            KY     T  +PAKI  D+   +++ A  A +AIG  G+SR DF +     ++F  E+N
Sbjct: 244 AKYIDNKVTMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDFFYTDKG-EIFLNELN 302

Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             PG T  S++P +    G S+ EL+  +V+
Sbjct: 303 TMPGFTQWSMYPLLWDNVGISYPELIERLVD 333


>gi|291087283|ref|ZP_06571884.1| D-alanine--D-alanine ligase A [Clostridium sp. M62/1]
 gi|291075677|gb|EFE13041.1| D-alanine--D-alanine ligase A [Clostridium sp. M62/1]
          Length = 368

 Score =  130 bits (327), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 83/257 (32%), Positives = 130/257 (50%), Gaps = 15/257 (5%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+AF VLHG +GEDG +Q + EL  +PY   G+LASA+SMDK+ +K V  + GV     +
Sbjct: 109 DVAFPVLHGLYGEDGTIQGLFELARLPYVGCGVLASAVSMDKLYTKIVADTLGVRQAAYV 168

Query: 112 LVNR--------FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
            V R         T   +   S P  IKP   GSS G+        +   L +++   H 
Sbjct: 169 PVMRGELSHMESVTERVEKYFSYPVFIKPSNAGSSRGVSKASDRSELENGLREAA--KHD 226

Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK----SDFYSYELKYSSLNSTHVLPAKI 219
            ++L+E+ + G E+ C V G  + +V    V +    +DFY ++ KY +  S  V+  ++
Sbjct: 227 RKILVEEMIVGREVECAVFGGGNGEVISSGVGEILAAADFYDFDAKYYNEESRTVVNPEL 286

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279
           P D  ++V+  A     A+   G++R DF        VF  EIN  PG T +S++P +  
Sbjct: 287 PGDAAEKVREAARRIFTAVDGYGMARVDFFVTEQGEVVFN-EINTIPGFTAISMYPMLFE 345

Query: 280 YAGYSFRELLLWMVEDA 296
            AG    EL+  ++E+ 
Sbjct: 346 AAGVDKTELVTRLIENG 362


>gi|302388800|ref|YP_003824621.1| D-alanine--D-alanine ligase [Thermosediminibacter oceani DSM 16646]
 gi|302199428|gb|ADL06998.1| D-alanine--D-alanine ligase [Thermosediminibacter oceani DSM 16646]
          Length = 364

 Score =  130 bits (327), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 93/347 (26%), Positives = 167/347 (48%), Gaps = 57/347 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS------VG----------- 43
           + V+ GG S E EVSL S  +  +A++ + + +  I + +       +G           
Sbjct: 6   VGVVFGGQSGEYEVSLMSATSIINAMDKSKYDIVPIGITKDGRWHVFLGDVSKIQDGTWV 65

Query: 44  --LVLAHLKPDLA--------------------FNVLHGNFGEDGLVQAILELLEIPYTH 81
              + A L PD                      F VLHG  GEDG VQ + EL+ IPY  
Sbjct: 66  DEAIPAFLPPDTGYKCAITLKDGIETRYHLDVIFPVLHGPHGEDGTVQGVFELMNIPYVS 125

Query: 82  SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP-----------PYVI 130
           SG+  SA+ MDK+ +K+++   G+PV    +   +  D  H ++            P  +
Sbjct: 126 SGVGPSAVCMDKVYTKKLLKQEGLPVVDFKVF--YKKDLPHKLTEMVEEVEKSFGYPCFV 183

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG--DASLD 188
           KP   GSS+GI      + +   ++ ++ ++   +LL+E+++   E+ C V+G  D    
Sbjct: 184 KPANLGSSVGITKAHDREELKNAIMHAAEFDR--KLLVERFIPAREIECSVLGNDDPVAS 241

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           V    +P  +FYSY  KY     + +L PA +  +  ++++ LA  A++A+ C  ++R D
Sbjct: 242 VPGEIIPSEEFYSYTAKYFDGGKSKLLIPAPLAAEETEKIRNLAVRAYKALDCTVMARVD 301

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           FL   ++   +  E+N  PG T +S++P++   +G  ++EL+  ++E
Sbjct: 302 FLISKITGVAYINELNTIPGFTKISMYPKLWEASGLPYKELIDRLIE 348


>gi|306833025|ref|ZP_07466157.1| D-alanine-D-alanine ligase [Streptococcus bovis ATCC 700338]
 gi|304424924|gb|EFM28058.1| D-alanine-D-alanine ligase [Streptococcus bovis ATCC 700338]
          Length = 348

 Score =  130 bits (327), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 99/333 (29%), Positives = 160/333 (48%), Gaps = 43/333 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           + +L GG S+EREVS+ S ++   A+    F V    + +S   +               
Sbjct: 6   LVLLYGGRSAEREVSVLSAESVMRAINYDKFFVKTYFITQSGDFIKTQEFSSKPADDEKL 65

Query: 49  -----------LKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
                      +KP        + F VLHG  GEDG +Q  LE+L++PY  + IL+S+++
Sbjct: 66  MTNATVVESQKIKPSDIYEEGAVVFPVLHGPMGEDGSIQGFLEILKMPYVGTNILSSSVA 125

Query: 91  MDKMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
           MDK+ +K V+ S GVP+   +       + +   +    ++ P  IKP   GSS+GI   
Sbjct: 126 MDKISTKHVLESAGVPLVAYVTYVEGADLEKAVAEVNEKLTYPVFIKPANMGSSVGI--S 183

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYS 201
           K D    L      +  +  ++LIE  V+  E+  G++G+A +  T   E+ V    FY 
Sbjct: 184 KADDEEGLRSAIDLALKYDSRILIETGVNAREIEVGILGNADVQTTLPGEV-VKDVAFYD 242

Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
           Y+ KY     T  +PA I  +I +E++  A  A +AIG  G+SR DF        V+  E
Sbjct: 243 YDAKYIDNKITMDIPAHIDSNIMEEMRGYATTAFRAIGGCGLSRCDFFLTE-DGHVYLNE 301

Query: 262 INVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           +N  PG T  S++P +    G ++ +L+  +VE
Sbjct: 302 LNTMPGFTQWSMYPLLWENMGLAYSDLIEKLVE 334


>gi|261749571|ref|YP_003257257.1| D-alanyl-alanine synthetase A [Blattabacterium sp. (Periplaneta
           americana) str. BPLAN]
 gi|261497664|gb|ACX84114.1| D-alanyl-alanine synthetase A [Blattabacterium sp. (Periplaneta
           americana) str. BPLAN]
          Length = 331

 Score =  130 bits (327), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 93/328 (28%), Positives = 163/328 (49%), Gaps = 41/328 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40
           +A++MGG + E  +SL SG+     L    F+V +I +                    D 
Sbjct: 4   IAIVMGGYTEESVISLKSGEVVYKNLSKEEFEVYKIYLFIEKWILKDKNNKEYPVNKQDF 63

Query: 41  SVGLVLAH-LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
           +V +     LK D  FN +HG  GEDG++QA   LL+IPYT      ++++ +K      
Sbjct: 64  TVRITNDQILKFDCVFNAIHGTPGEDGVLQAYFHLLKIPYTGCHFHHASVTFNKKYCLTF 123

Query: 100 VSSCGVPVCPSILVNRFTMDSQHLISP----PYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
           +   G+   PS  +N+     +  I      P  +KP + GSSLGI  + +++ +   + 
Sbjct: 124 LKEFGIKTAPSFFLNKNQSFCEKKILKKVGLPCFVKPNRSGSSLGISKVYQERELAKAI- 182

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDAS----LDVTEIAVPKSDFYSYELKYSSLNS 211
              ++    ++++E ++ G E++ GV+        L +TEI + ++DF+ +E KYS   S
Sbjct: 183 -EHAFRKDQEIIVESFLKGTEVSVGVISWNQDIKVLPITEI-ISRNDFFDFESKYSG-KS 239

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF---DPLSRKVFWLEINVQPGM 268
             + PA++   + K++++LA   ++ +   GISRS+++    DP     F+LEIN  PG+
Sbjct: 240 QEITPARLLPSLEKKIKKLAKNVYEILNLSGISRSEYILVNGDP-----FFLEINTIPGL 294

Query: 269 TPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +  SI P+    AG S  EL    + D+
Sbjct: 295 SEESILPKQLKIAGISLSELFKKNIYDS 322


>gi|161779852|gb|ABX79413.1| VanC4 [Enterococcus casseliflavus]
          Length = 350

 Score =  130 bits (327), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 81/250 (32%), Positives = 133/250 (53%), Gaps = 13/250 (5%)

Query: 49  LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
           L PD+ F ++HG +GEDG +Q + EL+++PY   G+ ASAL M+K    Q   + GV   
Sbjct: 93  LVPDVLFPIMHGKYGEDGSIQGLFELMKLPYVGCGVAASALCMNKWLLHQAAEAIGVQSA 152

Query: 109 PSILVNRFTMDSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN 161
           P+IL+     + Q  I         P   KP + GSS GI  +   + I   L    ++ 
Sbjct: 153 PTILLTN-QDNQQRQIEAFIQTHDFPVFFKPNEAGSSKGITKVTCVEEIAPAL--KEAFA 209

Query: 162 HGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK--SDFYSYELKYSSLNSTHVLPAKI 219
           +   +L+++ + G+E+ CG++G+ SL V           F+ +E KY  +++   +PA +
Sbjct: 210 YCSAVLLQKNIAGVEIGCGILGNDSLTVGACDAISLVEGFFDFEEKYQLISAKITVPAPL 269

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279
           P  I  +V+  A L + ++G +G++R DF F     +++  EIN  PG T  S +P M A
Sbjct: 270 PETIETKVKEQAQLLYHSLGLKGLARIDF-FVTDQGELYLNEINTMPGFTSHSRYPAMMA 328

Query: 280 YAGYSFRELL 289
             G S++ELL
Sbjct: 329 AIGLSYQELL 338


>gi|116072318|ref|ZP_01469585.1| D-alanine--D-alanine ligase [Synechococcus sp. BL107]
 gi|116064840|gb|EAU70599.1| D-alanine--D-alanine ligase [Synechococcus sp. BL107]
          Length = 350

 Score =  130 bits (327), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 94/343 (27%), Positives = 162/343 (47%), Gaps = 49/343 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDA----GFKVSQIDVDRS--------VGLVLAH 48
           + ++ GG S E EVS+ S       L        ++V    +D+            VLA 
Sbjct: 8   IGLVFGGYSGEHEVSIRSAATVIHGLRSGENSQRYRVIPFYIDQEGRWWGETVANRVLAS 67

Query: 49  LKP----------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
            KP                      ++ + VLHG  GEDG VQ + +L+  P+  +G+L 
Sbjct: 68  QKPIDQSDPLKAKGFRGLPEGSETVEVWYPVLHGPNGEDGTVQGLFKLMRQPFVGAGVLG 127

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISP-------PYVIKPLKG 135
           SA+SMDK+  K   +  G+   P + +N   ++     +H++         P  +KP   
Sbjct: 128 SAVSMDKLAMKAAFTGAGLSQVPYVGLNATDLNDSIRREHVLDRIEAELHYPCFVKPANL 187

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195
           GSS+GI  +     +   L  ++  +   +L++EQ V   EL C V+G   L  + +   
Sbjct: 188 GSSVGISKVHNRYELEQGLDHAAQLD--PRLVVEQGVHARELECAVLGGHQLRSSVVGEV 245

Query: 196 K--SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
           +  +D+Y Y  KY++  ST V+PA++P  + + VQ+ A  A  A+G  G++R DF +D  
Sbjct: 246 RFDADWYDYTTKYTAGLSTTVIPAELPEGVAERVQKQALEACSALGVTGMARVDFFYDDT 305

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             +++  EIN  PG T  S++P +   +G +  +L+  +V+ A
Sbjct: 306 KHQLWINEINTLPGFTSQSMYPMLWEASGVTLDQLVHKLVQSA 348


>gi|238755653|ref|ZP_04616989.1| D-alanine--D-alanine ligase [Yersinia ruckeri ATCC 29473]
 gi|238706166|gb|EEP98547.1| D-alanine--D-alanine ligase [Yersinia ruckeri ATCC 29473]
          Length = 363

 Score =  130 bits (327), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 96/349 (27%), Positives = 165/349 (47%), Gaps = 61/349 (17%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------------------- 40
           M V+ GG S+E EVSL S K    A++   F+V+ + +D+                    
Sbjct: 1   MGVIFGGKSAEHEVSLQSAKNIVDAIDTEKFEVTLLGIDKQGQWHVNDASSYLLHAENPA 60

Query: 41  ---------SVGLVLAHLKP--------------DLAFNVLHGNFGEDGLVQAILELLEI 77
                    +V LV    +               D+ F ++HG  GEDG +Q +L +  +
Sbjct: 61  LIALNHSNKNVALVPGQQQRQLIDANNASALSQLDVVFPIVHGTLGEDGSLQGLLRMANM 120

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP-------PYVI 130
           P+  SG++ SA SMDK  +K+++   G+ + P I + R   + Q+   P       P  I
Sbjct: 121 PFVGSGVVGSAASMDKDVTKRLLRDAGLNIAPFITLTRANRE-QYGFEPVREKLGLPLFI 179

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD----AS 186
           KP   GSS+G+  +   +     +  + S++H  ++L+E  + G E+ C V+G+    AS
Sbjct: 180 KPANQGSSVGVSKVCSAEEFTAAVELAFSFDH--KVLVESAIVGREIECAVLGNDQPKAS 237

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
           L   E+ +   +FYSY+ KY S +    V+PA +   +   ++ +A  A + + C G++R
Sbjct: 238 L-CGEVVI-SDEFYSYDTKYISDSGAQVVIPAVLDAQVSDRIRAVAVEAFRTLECLGMAR 295

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            D    P   K+   EIN  PG T +S++P++    G    EL+  ++E
Sbjct: 296 VDVFLTP-DNKIIINEINTLPGFTNISMYPKLWRATGIDSTELITTLIE 343


>gi|296130149|ref|YP_003637399.1| D-alanine/D-alanine ligase [Cellulomonas flavigena DSM 20109]
 gi|296021964|gb|ADG75200.1| D-alanine/D-alanine ligase [Cellulomonas flavigena DSM 20109]
          Length = 389

 Score =  130 bits (327), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 87/258 (33%), Positives = 133/258 (51%), Gaps = 19/258 (7%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-S 110
           D+ F +LHG FGEDG +Q +LEL ++ Y  SG+LASA+ MDK   K V++  G+ V P  
Sbjct: 124 DVVFPLLHGPFGEDGTLQGMLELADVRYVGSGVLASAVGMDKHMMKLVLAGSGLAVGPFR 183

Query: 111 ILVNRFTMDSQHL------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164
           +L      D+  L      +  P  +KP + GSSLGI  +     +      +++  H  
Sbjct: 184 VLPPGREPDAATLDAVVADLGLPLFVKPARAGSSLGISRVDDKADL--ADAIAAARVHDP 241

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVP--------KSDFYSYELKY-SSLNSTHVL 215
           ++++E  + G E+ CGV+G  S      ++P        +  FY +E KY      T   
Sbjct: 242 KVIVEAALFGREVECGVLGGRSGAPPRASLPGEIVVTDARHSFYDFEAKYLDEAGVTLSC 301

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275
           PA +P D+   VQ +A  A +A+GC G++R D    P   +V   EIN  PG TP S++P
Sbjct: 302 PADLPDDVVARVQDVAVRAFEAVGCEGLARVDVFVTP-DGEVVVNEINTMPGFTPYSMYP 360

Query: 276 EMAAYAGYSFRELLLWMV 293
            M A +G  +  L+  +V
Sbjct: 361 RMWAVSGLDYASLVDELV 378


>gi|329298784|ref|ZP_08256120.1| D-alanine/D-alanine ligase [Plautia stali symbiont]
          Length = 364

 Score =  130 bits (327), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 84/253 (33%), Positives = 141/253 (55%), Gaps = 14/253 (5%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+   ++HG  GEDG +Q +L +  +P+  S +L SA+SMDK  +K+++   G+ V P +
Sbjct: 100 DVIIPIVHGTLGEDGSLQGLLRMANLPFVRSDVLGSAVSMDKDFTKRLLRDAGLKVAPWL 159

Query: 112 LVN---RFTMDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
            V    R  +D Q +I+    P  IKP   GSS+G  V K  Q    D     ++    +
Sbjct: 160 SVTQAQRAALDVQAVIARFGLPLFIKPANQGSSVG--VSKVTQPDEFDAALGLAFRFDRK 217

Query: 166 LLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTH-VLPAKIPL 221
           +LIEQ + G E+ C V+G+ + + +   EI V  + FYSY+ KY S + T  V+PA I  
Sbjct: 218 VLIEQGISGREIECAVLGNEAPEASPCGEIVVHDA-FYSYDTKYISESGTQVVVPADIST 276

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYA 281
           +  + ++ +A  A QA+ C G++R D +F   +  +   E+N  PG T +S++P++   A
Sbjct: 277 EASEAIRAVAITAFQALECFGMARVD-VFLTETGDIIVNEVNTLPGFTNISMYPKLWLAA 335

Query: 282 GYSFRELLLWMVE 294
           G S+ +L+  ++E
Sbjct: 336 GLSYSDLITRLIE 348


>gi|327438466|dbj|BAK14831.1| D-alanine-D-alanine ligase [Solibacillus silvestris StLB046]
          Length = 357

 Score =  130 bits (327), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 99/342 (28%), Positives = 165/342 (48%), Gaps = 50/342 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV----DRSVG------------- 43
           + +L GG S+E EVSLS+ KA   AL+   F V  I +    +  VG             
Sbjct: 5   IGLLYGGKSAEHEVSLSTAKAVTQALDFNEFDVFPIFITLKGEWRVGPQLTEPAQTIEQL 64

Query: 44  ---------------LVLAHLKP--DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
                           +  H++   D+ F +LHG  GEDG VQ  LE+L IPY  +G+L 
Sbjct: 65  QFTTASDHSENNITQFIAKHMESPFDVIFPLLHGTNGEDGTVQGFLEVLNIPYVGNGVLG 124

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGS 137
           SA  MDK+  KQ+     +P  P     R   +          +  +  P  +KP   GS
Sbjct: 125 SAAGMDKVVMKQLFEMAKLPQLPYEYFIRSEWEREKEAWIKRCEQSLGYPMFVKPANLGS 184

Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAV 194
           S+GI   K   +  L+     +  +  +++IEQ V   E+   V+G+ + +V+   EI  
Sbjct: 185 SVGI--SKATNAAELEKAVQFALQYDRKIVIEQGVTAREIELAVLGNDTPNVSVAGEIK- 241

Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
           P ++FY Y+ KY   ++  ++PA +  D+Y  +  +A  A +AI   G+ R+DF F   +
Sbjct: 242 PMTEFYDYDSKYKDGSTALIIPAPLQNDVYTNLVDMAKRAFKAIDGAGLVRADF-FVTEN 300

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            +++  E+N  PG TPVS++P +  +   ++ +L+  +++ A
Sbjct: 301 NEIYINEVNTMPGFTPVSMYPLLWQHTDVTYPQLIKELIDFA 342


>gi|227538332|ref|ZP_03968381.1| D-alanine--D-alanine ligase [Sphingobacterium spiritivorum ATCC
           33300]
 gi|227241847|gb|EEI91862.1| D-alanine--D-alanine ligase [Sphingobacterium spiritivorum ATCC
           33300]
          Length = 334

 Score =  130 bits (327), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 98/320 (30%), Positives = 163/320 (50%), Gaps = 45/320 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALE-------------DAGFKVSQIDVDRSVG---- 43
           +A+L GG + E EVS  S     S L+             D  F V++  V  +V     
Sbjct: 5   IALLTGGYTGEAEVSFKSSAFVYSQLDHNKYDVYLITITKDHWFHVNEQGVKFTVNRENF 64

Query: 44  -LVLAH--LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
            L L H  ++ DLAF ++HG  GEDG +Q   ++L+IPYT    L S+L+M+K  +K V+
Sbjct: 65  TLPLDHETIRFDLAFILIHGTPGEDGRLQGYFDMLDIPYTSCDALTSSLTMNKGYTKAVL 124

Query: 101 SSCGVP---VCPSILV-----NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152
           +  G+P   +  S+L+            Q  +S PY +KP  GGSS+G+  +K ++ +  
Sbjct: 125 A--GIPDLHMAKSVLLFEAQRAEAVATVQANLSLPYFVKPNAGGSSIGMTKVKTNEELAE 182

Query: 153 DLLQS-SSWNHGDQLLIEQYVDGIELTCGVMGDAS-----LDVTEIAVPKSDFYSYELKY 206
            + ++  + N G Q+++E++V G E + G+  +       L  TE+   + +F+ YE KY
Sbjct: 183 AIDKAFDAENTGKQVIVEEFVTGREFSQGIYRNVEGLLTVLPATEVKTTR-EFFDYEAKY 241

Query: 207 SSLNSTHVLPAKIPLDIYKEVQ-RLAFLAHQA---IGCRGISRSDFLFDPLSRKVFWLEI 262
           +   +  + PA    D+ +E Q R+A L  +    + C+G+ R DF  +  + K +++EI
Sbjct: 242 TPGLTEEITPA----DLTEEQQSRIAALLREVYIRLNCKGMVRIDFFLENGTDKFYFIEI 297

Query: 263 NVQPGMTPVSIFPEMAAYAG 282
           N  PG T  S  P+    AG
Sbjct: 298 NTIPGQTAQSFIPQQVRAAG 317


>gi|306823715|ref|ZP_07457090.1| D-alanine-D-alanine ligase [Bifidobacterium dentium ATCC 27679]
 gi|309803027|ref|ZP_07697128.1| D-ala D-ala ligase N-terminal domain protein [Bifidobacterium
           dentium JCVIHMP022]
 gi|304553422|gb|EFM41334.1| D-alanine-D-alanine ligase [Bifidobacterium dentium ATCC 27679]
 gi|308220494|gb|EFO76805.1| D-ala D-ala ligase N-terminal domain protein [Bifidobacterium
           dentium JCVIHMP022]
          Length = 378

 Score =  130 bits (327), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 81/278 (29%), Positives = 141/278 (50%), Gaps = 32/278 (11%)

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV 105
           L H+  D    VLHG +GEDG +Q + E++ +PY   G+LASA  MDK  +K ++++ G+
Sbjct: 100 LGHV--DAVLPVLHGPYGEDGTIQGLFEMMNVPYVGCGVLASAACMDKHYTKVLLAAAGI 157

Query: 106 PVCPSILVN--------RFTMDSQHLISP--------PYVIKPLKGGSSLGIIVIKKD-Q 148
           PV P I ++         F  + + +++         P  +KP + GSS G+  ++++  
Sbjct: 158 PVAPGITLDARDYDAACAFAANGETMLAAVQAAGLRYPLFVKPSRAGSSFGVTKVEREGD 217

Query: 149 SIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP-----------KS 197
           +  L      + +H  ++L+EQ +D  E+ C V+   + D    + P             
Sbjct: 218 AAELAAAVFEASHHDWRVLVEQGIDAREIECAVLCPKAGDEPRASWPGEIVLDKRAGGDD 277

Query: 198 DFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256
            FY ++ KY    ++HV +PA +P +  + V+  A  A +A+   G+SR D  F     K
Sbjct: 278 QFYDFDSKYMDAEASHVEVPAALPQETLELVRETAKKAFKAVDGTGLSRVD-TFVTADGK 336

Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           V   EIN  PG TP+S++P+     G S+ +L+  ++E
Sbjct: 337 VMVNEINTMPGFTPISMYPKAWDATGVSYTDLISTLIE 374


>gi|40217779|gb|AAR82837.1| D-alanine,D-alanine ligase [Enterococcus faecium]
          Length = 333

 Score =  130 bits (326), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 78/246 (31%), Positives = 130/246 (52%), Gaps = 16/246 (6%)

Query: 53  LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--S 110
           + F VLHG  GEDG +Q  LE L +PY  +G+L SA +MDK+ +K ++ + GVP  P   
Sbjct: 92  IVFPVLHGPNGEDGTIQGFLETLNMPYVGAGVLTSACAMDKIMTKYILQAAGVPQVPYVP 151

Query: 111 ILVNRFTMDSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
           +L N++  + + +          P  +KP   GSS+GI   K +    L    ++++ + 
Sbjct: 152 VLKNQWKENPKKVFDQCEGSLLYPMFVKPANMGSSVGI--TKAENREELQNALATAYQYD 209

Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
            + ++EQ ++  E+   V+G+  +  T   E+ V    FY YE KY +      +PA++P
Sbjct: 210 SRAIVEQGIEAREIEVAVLGNEDVRTTLPGEV-VKDVAFYDYEAKYINNKIEMQIPAEVP 268

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280
            ++Y++ Q  A LA+  +G  G+SR DF F     ++F  E+N  PG T  S++P +   
Sbjct: 269 EEVYQKAQEYAKLAYTMLGGSGLSRCDF-FLTNKNELFLNELNSMPGFTEFSMYPTLMGK 327

Query: 281 AGYSFR 286
            G   R
Sbjct: 328 YGLEIR 333


>gi|226320941|ref|ZP_03796489.1| D-alanine--D-alanine ligase [Borrelia burgdorferi 29805]
 gi|226233643|gb|EEH32376.1| D-alanine--D-alanine ligase [Borrelia burgdorferi 29805]
          Length = 361

 Score =  130 bits (326), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 89/344 (25%), Positives = 172/344 (50%), Gaps = 50/344 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAG-FKVSQIDVDRSVGL--------------- 44
           + ++ GG+S E E+S  S  +   AL D   + +  + +D+  G+               
Sbjct: 5   LMLIFGGVSFEHEISCKSAYSIYLALLDLNKYNIYPVYIDKCTGVWYLLDSVSNPPKPIN 64

Query: 45  --VL---------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87
             VL                +LK D+ F V+HG  GEDG +Q +L++++IP   +GI+ S
Sbjct: 65  TDVLPIVSLLPGFGIFSNNKNLKIDVVFPVVHGRTGEDGAIQGVLKVMDIPCVGAGIIGS 124

Query: 88  ALSMDKMRSKQVVSSCGVPVCPSILVNR--FTMDSQHL-------ISPPYVIKPLKGGSS 138
           A+S +K   K ++ S  +P+ P I   +  + +D + +       +  P ++KP   GSS
Sbjct: 125 AISSNKYFCKLLLKSFDIPLVPFIGFRQHDYFLDKEEIKRNVKEALGYPVIVKPAVLGSS 184

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV---TEIAVP 195
           +GI V   +  I   + ++  ++    ++IE++++  E+ C ++G+  + +    E+ V 
Sbjct: 185 IGINVAYSENQIESFIKEALKYDL--TIVIEKFIEAREIECSIIGNEKMKIFSPGEVVVQ 242

Query: 196 KSDFYSYELKYSSLNSTHV---LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
              FY Y+ KYS +    +   +PA +  +    ++  AFLA++ +  RG++R DF  + 
Sbjct: 243 DFIFYDYDAKYSVIPGNSIIFNIPAHLETNQLLSIKEYAFLAYKNLELRGMARVDFFVEK 302

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            S  ++  EIN  PG T +S+F +M +  G  F++L+  +++ A
Sbjct: 303 KSGTIYLNEINTIPGFTDISMFAKMCSNDGLQFKDLVDNLIDYA 346


>gi|148993757|ref|ZP_01823184.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae SP9-BS68]
 gi|6634579|emb|CAB64475.1| D-ala,D-ala ligase [Streptococcus pneumoniae]
 gi|6634584|emb|CAB64479.1| D-ala,D-ala ligase [Streptococcus pneumoniae]
 gi|147927713|gb|EDK78737.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae SP9-BS68]
 gi|332200230|gb|EGJ14303.1| D-alanine--D-alanine ligase family protein [Streptococcus
           pneumoniae GA47368]
          Length = 347

 Score =  130 bits (326), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 100/331 (30%), Positives = 161/331 (48%), Gaps = 43/331 (12%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQ--------------------------- 35
           +L GG S+EREVS+ S ++   A++   F V                             
Sbjct: 7   LLYGGRSAEREVSVLSAESVMRAVDYDRFTVKTFFISQSGDFIKTQEFSHAPGQEDRLMT 66

Query: 36  ---IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
              ID D+ V     + +  + F VLHG  GEDG VQ  LE+L++PY    IL+S+L+MD
Sbjct: 67  NETIDWDKKVAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLAMD 126

Query: 93  KMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           K+ +K+V+ S G+   P +       V     + +  ++ P   KP   GSS+GI   K 
Sbjct: 127 KITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLAYPVFTKPSNMGSSVGI--SKS 184

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYE 203
           +    L      ++ +  ++L+EQ V+  E+  G++G+  +  T   E+ V    FY Y+
Sbjct: 185 ENQEELRQALKLAFRYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVAFYDYD 243

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            KY     T  +PAKI  D+   +++ A  A +AIG  G+SR DF +     ++F  E+N
Sbjct: 244 AKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDFFYTDKG-EIFLNELN 302

Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             PG T  S++P +    G S+ EL+  +V+
Sbjct: 303 TMPGFTQWSMYPLLWDNMGISYPELIERLVD 333


>gi|23502147|ref|NP_698274.1| D-alanyl-alanine synthetase A [Brucella suis 1330]
 gi|161619222|ref|YP_001593109.1| D-alanine--D-alanine ligase [Brucella canis ATCC 23365]
 gi|254704548|ref|ZP_05166376.1| D-alanine--D-alanine ligase [Brucella suis bv. 3 str. 686]
 gi|260566209|ref|ZP_05836679.1| D-alanine-D-alanine ligase A [Brucella suis bv. 4 str. 40]
 gi|261755232|ref|ZP_05998941.1| D-alanine-D-alanine ligase A [Brucella suis bv. 3 str. 686]
 gi|38257340|sp|Q8G044|DDLA_BRUSU RecName: Full=D-alanine--D-alanine ligase A; AltName:
           Full=D-Ala-D-Ala ligase A; AltName: Full=D-alanylalanine
           synthetase A
 gi|23348110|gb|AAN30189.1| D-alanine--D-alanine ligase A [Brucella suis 1330]
 gi|161336033|gb|ABX62338.1| D-alanine--D-alanine ligase [Brucella canis ATCC 23365]
 gi|260155727|gb|EEW90807.1| D-alanine-D-alanine ligase A [Brucella suis bv. 4 str. 40]
 gi|261744985|gb|EEY32911.1| D-alanine-D-alanine ligase A [Brucella suis bv. 3 str. 686]
          Length = 353

 Score =  130 bits (326), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 96/343 (27%), Positives = 168/343 (48%), Gaps = 55/343 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           + VL GG S+E +VS+ S     +AL+ A ++   + V R+   +L+             
Sbjct: 8   IVVLFGGRSAEHDVSVLSATNVMNALDPAKYEAVPVFVTRAGQWLLSRFVNGALEKPSSG 67

Query: 50  --------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                     K D+ F VLHG  GEDG VQ + ++  +P    G
Sbjct: 68  AELCLVPGGCGRAIVVPDAGAPYEADKIDIIFPVLHGLHGEDGAVQGLAQVARVPLAGCG 127

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSL 139
           I  SA ++DK  +K++V+  G+    S+ + R  + +    +  +  P  IKP + GSS+
Sbjct: 128 IPGSANALDKDIAKRLVNEAGLSTAKSVTITREEVPAFSALEQALGLPIFIKPARQGSSV 187

Query: 140 GI--IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD--ASLDVTEIA-- 193
           G+  +V + D    +    S  + + D+LL E+++   E+ CGV+ D   +L V+     
Sbjct: 188 GVHKVVTEADYQAAM----SDGFTYDDKLLAEEFIQAREVECGVLEDEGGALFVSRAGEI 243

Query: 194 VPKSD--FYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
           VP     FYSY+ KY   + T + +PA++P  +  E++ +A  A + +GC  ++R DF F
Sbjct: 244 VPAESHCFYSYDAKYIDADGTEIKVPAELPEQVENEIRAIATRAFRVLGCDSMARVDF-F 302

Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
               R++   EIN  PG T +S++ ++ A +G S+ E++  +V
Sbjct: 303 VTADRRIVLNEINTIPGFTDMSMYSKVMAVSGVSYPEIINRLV 345


>gi|331700385|ref|YP_004336624.1| D-alanine--D-alanine ligase [Pseudonocardia dioxanivorans CB1190]
 gi|326955074|gb|AEA28771.1| D-alanine--D-alanine ligase [Pseudonocardia dioxanivorans CB1190]
          Length = 315

 Score =  130 bits (326), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 96/286 (33%), Positives = 147/286 (51%), Gaps = 18/286 (6%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG+S EREVSL SG+  A +L  AG  V + DVD S+   L   +PD     LHG
Sbjct: 6   VAVLAGGLSHEREVSLRSGRRVAGSLRAAGATVFEWDVDSSLVERLRVERPDAVVIALHG 65

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI--------- 111
             GE+G +QA+LELL +P+  S   A     DK  +K  +   G+     +         
Sbjct: 66  GEGENGAIQAVLELLGVPFVGSRAPACRRVWDKPTAKSELRRAGLDTPDWVALPHATFRE 125

Query: 112 LVNRFTMDSQ-HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           L  R  +D+    +  P ++KP +GGS+LG  V+   + +P  ++  S   + D +L E+
Sbjct: 126 LGARSVLDAMVDKLGLPLMLKPDQGGSALGAQVVTTVEDLPSVMV--SCLAYSDTVLAER 183

Query: 171 YVDGIELTCGVM---GDAS-LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE 226
           ++DG E+   V+   G+   L + E+  P    Y Y  +Y+  ++    PA++  D+   
Sbjct: 184 FIDGTEVAVAVVETDGEPQVLPLVEVE-PLGGVYDYTARYTPGSTDFHCPARLAPDVLAR 242

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
           VQ  A  AH+ +G R +SR D + D     V  LE+NV PG+T  S
Sbjct: 243 VQDAALSAHRLLGLRDLSRMDAVVDA-DGNVQILELNVSPGLTDTS 287


>gi|33861862|ref|NP_893423.1| D-alanine--D-alanine ligase [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
 gi|39930839|sp|Q7V0F6|DDL_PROMP RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|33640230|emb|CAE19765.1| D-alanine--D-alanine ligase [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
          Length = 355

 Score =  130 bits (326), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 99/350 (28%), Positives = 169/350 (48%), Gaps = 54/350 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDA---------GFKVSQ----IDVDRSVGLVLA 47
           + ++ GG S+E +VS+SS K    AL             F +++    +D D+S+ L+  
Sbjct: 9   IGIIFGGESNEHDVSVSSAKTVFKALISKTNINRFWVKAFYINKHGVWLDNDQSLVLLKE 68

Query: 48  HLKP-------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
             K                          D+ F +LHG  GEDG +  +L+  + P    
Sbjct: 69  KRKNETIDKNQVFPKREINFLNTIEFQGIDIWFPLLHGVNGEDGAIHGLLKFTQKPIVGG 128

Query: 83  GILASALSMDKMRSKQVVSSCGVP-----------VCPSILVNRFTMDSQHLISPPYVIK 131
           GIL SAL MDK+  K++ S   +P           +    + N  +++    +  P  +K
Sbjct: 129 GILGSALGMDKILMKKIFSHLEIPQVNYLDIQNQDLSDDKVKNNLSVEIIEKLKLPVFVK 188

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSSLGI   K    I +  LQ + W    +++IE+ +D  EL CG++G+  L  +E
Sbjct: 189 PANSGSSLGISKAKTRSEI-IKALQKA-WEIDSRIVIEEGLDVRELECGIIGNLKLTASE 246

Query: 192 IAVPK--SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
           I      +D+Y Y+ KYS +++  ++PA I   I ++++ +A  + +A+   G +R DF 
Sbjct: 247 IGEVSYSTDWYDYDSKYS-MDNQIIIPADIDSQISEQIKDIAIRSCRALNIYGFARVDFF 305

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
            + +S K+F  EIN  PG T  S+FP +   +G +  +L+  +V+ +S L
Sbjct: 306 LEKISNKIFLNEINTIPGFTSKSMFPMLWNASGLNIDQLVAKLVDISSDL 355


>gi|154684959|ref|YP_001420120.1| D-alanyl-alanine synthetase A [Bacillus amyloliquefaciens FZB42]
 gi|190359113|sp|A7Z1L3|DDL_BACA2 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|154350810|gb|ABS72889.1| Ddl [Bacillus amyloliquefaciens FZB42]
          Length = 354

 Score =  130 bits (326), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 85/255 (33%), Positives = 140/255 (54%), Gaps = 16/255 (6%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-- 109
           D+ F +LHG  GEDG +Q +LELL +PY  +G+LAS+  MDK+  K + +  G+P     
Sbjct: 88  DVVFPLLHGPNGEDGTIQGLLELLNVPYVGNGVLASSAGMDKVIMKHLFAQAGLPQAKYA 147

Query: 110 SILVNRF--TMDS-----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
           + L   +  T DS     +  +  P  +KP   GSS+GI   +  +   L+     ++ +
Sbjct: 148 AFLKKDWKQTPDSCLQQVEKELGYPCFVKPANLGSSVGISKCRNREE--LEKAFELAFEY 205

Query: 163 GDQLLIEQYVDGIELTCGVMGDASLD---VTEIAVPKSDFYSYELKYSSLNSTHVLPAKI 219
             ++++E+ + G E+  GV+G+       V EIA PK+DFY Y+ KY   ++  ++PA++
Sbjct: 206 DRKIVVEEGIAGREIEIGVLGNDEPKCSAVGEIA-PKTDFYDYKAKYEDGDTDLMIPAQV 264

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279
             + Y E+  +A  A +AI   G+ R+DF F     +V   E+N  PG TP S+FP +  
Sbjct: 265 TDEQYAEISEMAIKAFKAIDGSGLVRADF-FLTNDGQVLINEVNTMPGFTPFSMFPLLWK 323

Query: 280 YAGYSFRELLLWMVE 294
            AG  + +L+  +VE
Sbjct: 324 EAGVDYSDLIEQLVE 338


>gi|118445023|ref|YP_879025.1| D-alanyl-alanine synthetase A [Clostridium novyi NT]
 gi|166198481|sp|A0Q323|DDL_CLONN RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|118135479|gb|ABK62523.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)
           [Clostridium novyi NT]
          Length = 343

 Score =  130 bits (326), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 97/334 (29%), Positives = 168/334 (50%), Gaps = 43/334 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44
           +A+L GG S+E EVS  S  +    ++ + + V  I + +                    
Sbjct: 5   VAILFGGQSTEHEVSRVSASSVLKNIDLSKYDVYPIGITKDGKWFEYTGAIDKIESGEWE 64

Query: 45  ------------VLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
                       +L + + D+ F V+HG +GEDG +Q + +LL IP    G+++SA+ MD
Sbjct: 65  KDEFYKNPNGQEILFNREVDVVFPVMHGLYGEDGTIQGLCKLLTIPCVGPGVMSSAVCMD 124

Query: 93  KMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISP-------PYVIKPLKGGSSLGIIV 143
           K+ +K V+ + GV     ++VN   +  +   +IS           IKP   GSS+GI  
Sbjct: 125 KVYTKYVLENFGVKQADYVVVNAHDYKNNKMDIISTIENKLGYDVFIKPSNSGSSVGISK 184

Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT--EIAVPKSDFY 200
               + +   L ++  ++   ++L+E  ++  E+   V+G D  +  T  EI VP ++FY
Sbjct: 185 AHNREELEAGLEEALKFDR--KVLVEVALNAREIEVAVLGNDEPVAATPGEI-VPANEFY 241

Query: 201 SYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260
            YE KYS+  S  +LPA +  +  ++V+ LA    + + C G+SR DFL D  + +V+  
Sbjct: 242 DYEAKYSNAQSKLLLPANLSPEKLEKVKELAVRIFKMLDCAGMSRVDFLVDKETEEVYLN 301

Query: 261 EINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           EIN  PG T +S++P+M    G ++ EL+  ++E
Sbjct: 302 EINTIPGFTKISMYPKMWQAEGKAYGELISEIIE 335


>gi|307702298|ref|ZP_07639256.1| D-alanine--D-alanine ligase [Streptococcus oralis ATCC 35037]
 gi|307624101|gb|EFO03080.1| D-alanine--D-alanine ligase [Streptococcus oralis ATCC 35037]
          Length = 347

 Score =  130 bits (326), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 99/331 (29%), Positives = 161/331 (48%), Gaps = 43/331 (12%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQ--------------------------- 35
           +L GG S+EREVS+ S ++   A+    F V                             
Sbjct: 7   LLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDFIKTQEFSQTPGQEDRLMT 66

Query: 36  ---IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
              ID D+ +     + +  + F VLHG  GEDG VQ  LE+L++PY    IL+S+L+MD
Sbjct: 67  NDTIDWDKKIAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLAMD 126

Query: 93  KMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           K+ +K+V+ S G+   P +       V     + +  ++ P   KP   GSS+GI   K 
Sbjct: 127 KITTKRVLESAGIAQVPYVAIVEGDDVTSKIAEVEEKLTYPVFTKPSNMGSSVGI--SKS 184

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYE 203
           +    L      ++ +  ++L+EQ V+  E+  G++G+  +  T   E+ V    FY Y+
Sbjct: 185 ENQEELRQALELAFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVAFYDYD 243

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            KY     T  +PAKI  D+   +++ A +A +AIG  G+SR DF +     ++F  E+N
Sbjct: 244 AKYIDNKITMDIPAKISDDVVAVMRQNAEIAFRAIGGLGLSRCDFFYTD-KGEIFLNELN 302

Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             PG T  S++P +    G S+ EL+  +V+
Sbjct: 303 TMPGFTQWSMYPLLWDNMGISYPELIEHLVD 333


>gi|225627738|ref|ZP_03785775.1| D-alanine--D-alanine ligase [Brucella ceti str. Cudo]
 gi|225617743|gb|EEH14788.1| D-alanine--D-alanine ligase [Brucella ceti str. Cudo]
          Length = 366

 Score =  130 bits (326), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 96/343 (27%), Positives = 168/343 (48%), Gaps = 55/343 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           + VL GG S+E +VS+ S     +AL+ A ++   + V R+   +L+             
Sbjct: 21  IVVLFGGRSAEHDVSVLSATNVMNALDPAKYEAVPVFVTRAGQWLLSRFVNGALEKPSSG 80

Query: 50  --------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                     K D+ F VLHG  GEDG VQ + ++  +P    G
Sbjct: 81  AELCLVPGGCGRAIVVPDAGAPYEADKIDIIFPVLHGLHGEDGAVQGLAQVARVPLAGCG 140

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSL 139
           I  SA ++DK  +K++V+  G+    S+ + R  + +    +  +  P  IKP + GSS+
Sbjct: 141 IPGSANALDKDIAKRLVNEAGLSTAKSVTITREEVPAFSALEQALGLPIFIKPARQGSSV 200

Query: 140 GI--IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD--ASLDVTEIA-- 193
           G+  +V + D    +    S  + + D+LL E+++   E+ CGV+ D   +L V+     
Sbjct: 201 GVHKVVTEADYQAAM----SDGFTYDDKLLAEEFIQAREVECGVLEDEGGALFVSRAGEI 256

Query: 194 VPKSD--FYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
           VP     FYSY+ KY   + T + +PA++P  +  E++ +A  A + +GC  ++R DF F
Sbjct: 257 VPAESHCFYSYDAKYIDADGTEIKVPAELPEQVENEIRAIAAKAFRVLGCDSMARVDF-F 315

Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
               R++   EIN  PG T +S++ ++ A +G S+ E++  +V
Sbjct: 316 VTADRRIVLNEINTIPGFTDMSMYSKVMAVSGVSYPEIINRLV 358


>gi|254526519|ref|ZP_05138571.1| D-alanine--D-alanine ligase [Prochlorococcus marinus str. MIT 9202]
 gi|221537943|gb|EEE40396.1| D-alanine--D-alanine ligase [Prochlorococcus marinus str. MIT 9202]
          Length = 355

 Score =  130 bits (326), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 96/345 (27%), Positives = 167/345 (48%), Gaps = 54/345 (15%)

Query: 1   MAVLMGGISSEREVSLSSGK----ACASALEDAGFKVSQ---------IDVDRSVGLVLA 47
           + ++ GG S+E EVS+SS K    A  S +    FKV           +D D S  ++  
Sbjct: 9   IGLIFGGYSNEHEVSISSAKTVFQAFNSEINKKRFKVKAFYIDKYGDWLDNDLSEKILND 68

Query: 48  HLKP-------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
            +K                          D+ F +LHG  GEDG +  +L+  + P    
Sbjct: 69  EIKSQNIKKQEIVNQQKINFLDGIEFQNIDVWFPLLHGLNGEDGSIHGLLQYTKKPIVGC 128

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL-----------ISPPYVIK 131
           GIL SA+ MDK+  K + S+  +P    +      ++ + +           ++ P+ +K
Sbjct: 129 GILGSAIGMDKIMMKTIFSNLKIPQVNYLAFQNEDLNDREVKKKVINEILKKLNFPFFVK 188

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSSLGI  +  +  I   L ++   +   ++L+E+ ++  E+ CG++G++ L  +E
Sbjct: 189 PSNSGSSLGISKVINESEILHSLEKAQKIDS--RILVEEGLEVREIECGIIGNSELLTSE 246

Query: 192 IAVPK--SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
           I   K  SD+Y Y+ KY S N+  ++PA+I   I KE++++A  + +A+   G +R DF 
Sbjct: 247 IGEVKYESDWYDYDSKYYS-NNKIIIPAEIDSKITKEIKKIAIQSCKALNIFGFARVDFF 305

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            +  S K+   EIN  PG T  S+FP +   +G +  +L+  +V+
Sbjct: 306 LEKYSNKILLNEINTIPGFTTNSMFPMLWKASGLNIEQLVAKLVD 350


>gi|261317898|ref|ZP_05957095.1| D-alanine-D-alanine ligase A [Brucella pinnipedialis B2/94]
 gi|265988927|ref|ZP_06101484.1| D-alanine-D-alanine ligase A [Brucella pinnipedialis M292/94/1]
 gi|261297121|gb|EEY00618.1| D-alanine-D-alanine ligase A [Brucella pinnipedialis B2/94]
 gi|264661124|gb|EEZ31385.1| D-alanine-D-alanine ligase A [Brucella pinnipedialis M292/94/1]
          Length = 360

 Score =  130 bits (326), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 96/343 (27%), Positives = 168/343 (48%), Gaps = 55/343 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           + VL GG S+E +VS+ S     +AL+ A ++   + V R+   +L+             
Sbjct: 15  IVVLFGGRSAEHDVSVLSATNVMNALDPAKYEAVPVFVTRAGQWLLSRFVNGALEKPSSG 74

Query: 50  --------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                     K D+ F VLHG  GEDG VQ + ++  +P    G
Sbjct: 75  AELCLVPGGCGRAIVVPDAGAPYEADKIDIIFPVLHGLHGEDGAVQGLAQVARVPLAGCG 134

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSL 139
           I  SA ++DK  +K++V+  G+    S+ + R  + +    +  +  P  IKP + GSS+
Sbjct: 135 IPGSANALDKDIAKRLVNEAGLSTAKSVTITREEVPAFSALEQALGLPIFIKPARQGSSV 194

Query: 140 GI--IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD--ASLDVTEIA-- 193
           G+  +V + D    +    S  + + D+LL E+++   E+ CGV+ D   +L V+     
Sbjct: 195 GVHKVVTEADYQAAM----SDGFTYDDKLLAEEFIQAREVECGVLEDEGGALFVSRAGEI 250

Query: 194 VPKSD--FYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
           VP     FYSY+ KY   + T + +PA++P  +  E++ +A  A + +GC  ++R DF F
Sbjct: 251 VPAESHCFYSYDAKYIDADGTEIKVPAELPEQVENEIRAIAAKAFRVLGCDSMARVDF-F 309

Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
               R++   EIN  PG T +S++ ++ A +G S+ E++  +V
Sbjct: 310 VTADRRIVLNEINTIPGFTDMSMYSKVMAVSGVSYPEIINRLV 352


>gi|312867261|ref|ZP_07727471.1| D-ala D-ala ligase N-terminal domain protein [Streptococcus
           parasanguinis F0405]
 gi|311097390|gb|EFQ55624.1| D-ala D-ala ligase N-terminal domain protein [Streptococcus
           parasanguinis F0405]
          Length = 348

 Score =  130 bits (326), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 95/333 (28%), Positives = 162/333 (48%), Gaps = 43/333 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQ------------------------- 35
           + +L GG S+EREVS+ S ++   A++   F V                           
Sbjct: 6   LILLYGGRSAEREVSVLSAESVMRAIDYQAFSVQTYFITQSGDFIQTQAFEEKPADDEKL 65

Query: 36  -----IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
                +D  + V     + +  + F VLHG  GEDG +Q  LE+L++PY   GILAS+++
Sbjct: 66  MTNDTVDWSKKVAPSAIYKEGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCGILASSVA 125

Query: 91  MDKMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
           MDK+ +K+V+ S  +P  P +       V+      +  +S P   KP   GSS+GI   
Sbjct: 126 MDKITTKRVLESAVIPQVPYVAVVEGDDVDEKIATIEATLSYPVFTKPSNMGSSVGI--S 183

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYS 201
           K +    L      ++ +  ++L+EQ V+  E+  G++G+  +  T   E+ V    FY 
Sbjct: 184 KAENQTELRTALELAFKYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVAFYD 242

Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
           Y+ KY     T  +PA++  ++ K ++  A  A +AIG  G++R DF +     ++F  E
Sbjct: 243 YDAKYIDNKITMAIPAQLDPEVVKTMRTNAEKAFRAIGGLGLARCDFFYTD-KGEIFLNE 301

Query: 262 INVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           +N  PG T  S++P +    G ++ +L+  +VE
Sbjct: 302 LNTMPGFTQWSMYPLLWDNMGLNYTDLITKLVE 334


>gi|149011467|ref|ZP_01832714.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae SP19-BS75]
 gi|182684613|ref|YP_001836360.1| D-alanylalanine synthetase [Streptococcus pneumoniae CGSP14]
 gi|303258600|ref|ZP_07344580.1| D-alanyl-alanine synthetase A [Streptococcus pneumoniae SP-BS293]
 gi|303262687|ref|ZP_07348627.1| D-alanyl-alanine synthetase A [Streptococcus pneumoniae SP14-BS292]
 gi|303263627|ref|ZP_07349549.1| D-alanyl-alanine synthetase A [Streptococcus pneumoniae BS397]
 gi|303266388|ref|ZP_07352277.1| D-alanyl-alanine synthetase A [Streptococcus pneumoniae BS457]
 gi|303268261|ref|ZP_07354059.1| D-alanyl-alanine synthetase A [Streptococcus pneumoniae BS458]
 gi|229486022|sp|B2IRS6|DDL_STRPS RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|147764457|gb|EDK71388.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae SP19-BS75]
 gi|182629947|gb|ACB90895.1| D-alanylalanine synthetase [Streptococcus pneumoniae CGSP14]
 gi|301802373|emb|CBW35127.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae INV200]
 gi|302636243|gb|EFL66738.1| D-alanyl-alanine synthetase A [Streptococcus pneumoniae SP14-BS292]
 gi|302640101|gb|EFL70556.1| D-alanyl-alanine synthetase A [Streptococcus pneumoniae SP-BS293]
 gi|302642212|gb|EFL72561.1| D-alanyl-alanine synthetase A [Streptococcus pneumoniae BS458]
 gi|302644088|gb|EFL74346.1| D-alanyl-alanine synthetase A [Streptococcus pneumoniae BS457]
 gi|302646665|gb|EFL76890.1| D-alanyl-alanine synthetase A [Streptococcus pneumoniae BS397]
 gi|332201096|gb|EGJ15167.1| D-alanine--D-alanine ligase family protein [Streptococcus
           pneumoniae GA47901]
          Length = 347

 Score =  130 bits (326), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 100/331 (30%), Positives = 161/331 (48%), Gaps = 43/331 (12%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKV----------------------------- 33
           +L GG S+EREVS+ S ++   A++   F V                             
Sbjct: 7   LLYGGRSAEREVSVLSAESVMRAVDYDRFTVKTFFISQSGDFIKTQEFSHDPGQEDRLMT 66

Query: 34  -SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
              ID D+ V     + +  + F VLHG  GEDG VQ  LE+L++PY    IL+S+L+MD
Sbjct: 67  NETIDWDKKVAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLAMD 126

Query: 93  KMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           K+ +K+V+ S G+   P +       V     + +  ++ P   KP   GSS+GI   K 
Sbjct: 127 KITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLAYPVFTKPSNMGSSVGI--SKS 184

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYE 203
           +    L      ++ +  ++L+EQ V+  E+  G++G+  +  T   E+ V    FY Y+
Sbjct: 185 ENQEELRQALELAFRYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVAFYDYD 243

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            KY     T  +PAKI  D+   +++ A  A +AIG  G+SR DF +     ++F  E+N
Sbjct: 244 AKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDFFYTDKG-EIFLNELN 302

Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             PG T  S++P +    G S+ EL+  +V+
Sbjct: 303 TMPGFTQWSMYPLLWDNMGISYPELIERLVD 333


>gi|293365895|ref|ZP_06612598.1| D-alanine--D-alanine ligase [Streptococcus oralis ATCC 35037]
 gi|291315573|gb|EFE56023.1| D-alanine--D-alanine ligase [Streptococcus oralis ATCC 35037]
          Length = 372

 Score =  130 bits (326), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 99/331 (29%), Positives = 161/331 (48%), Gaps = 43/331 (12%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQ--------------------------- 35
           +L GG S+EREVS+ S ++   A+    F V                             
Sbjct: 32  LLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDFIKTQEFSQTPGQEDRLMT 91

Query: 36  ---IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
              ID D+ +     + +  + F VLHG  GEDG VQ  LE+L++PY    IL+S+L+MD
Sbjct: 92  NDTIDWDKKIAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLAMD 151

Query: 93  KMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           K+ +K+V+ S G+   P +       V     + +  ++ P   KP   GSS+GI   K 
Sbjct: 152 KITTKRVLESAGIAQVPYVAIVEGDDVTSKIAEVEEKLTYPVFTKPSNMGSSVGI--SKS 209

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYE 203
           +    L      ++ +  ++L+EQ V+  E+  G++G+  +  T   E+ V    FY Y+
Sbjct: 210 ENQEELRQALELAFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVAFYDYD 268

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            KY     T  +PAKI  D+   +++ A +A +AIG  G+SR DF +     ++F  E+N
Sbjct: 269 AKYIDNKITMDIPAKISDDVVAVMRQNAEIAFRAIGGLGLSRCDFFYTDKG-EIFLNELN 327

Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             PG T  S++P +    G S+ EL+  +V+
Sbjct: 328 TMPGFTQWSMYPLLWDNMGISYPELIEHLVD 358


>gi|303255992|ref|ZP_07342020.1| D-alanyl-alanine synthetase A [Streptococcus pneumoniae BS455]
 gi|302597051|gb|EFL64169.1| D-alanyl-alanine synthetase A [Streptococcus pneumoniae BS455]
          Length = 347

 Score =  130 bits (326), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 100/331 (30%), Positives = 160/331 (48%), Gaps = 43/331 (12%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKV----------------------------- 33
           +L GG S+EREVS+ S ++   A+    F V                             
Sbjct: 7   LLYGGRSAEREVSVLSAESVMRAVNYNRFTVKTFFISQSGDFIKTQEFSQTPGQEDRLMT 66

Query: 34  -SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
              ID D+ V     + +  + F VLHG  GEDG VQ  LE+L++PY    IL+S+L+MD
Sbjct: 67  NETIDWDKKVAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLAMD 126

Query: 93  KMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           K+ +K+V+ S G+   P +       V     + +  ++ P   KP   GSS+GI   K 
Sbjct: 127 KITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLAYPVFTKPSNMGSSVGI--SKS 184

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYE 203
           +    L      ++ +  ++L+EQ V+  E+  G++G+  +  T   E+ V    FY Y+
Sbjct: 185 ENQEELRQALELAFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVAFYDYD 243

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            KY     T  +PAKI  D+   +++ A  A +AIG  G+SR DF +     ++F  E+N
Sbjct: 244 AKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDFFYTDKG-EIFLNELN 302

Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             PG T  S++P +    G S+ EL+  +V+
Sbjct: 303 TMPGFTQWSMYPLLWDNMGISYPELIERLVD 333


>gi|254710334|ref|ZP_05172145.1| D-alanine--D-alanine ligase A [Brucella pinnipedialis B2/94]
 gi|256031828|ref|ZP_05445442.1| D-alanine--D-alanine ligase A [Brucella pinnipedialis M292/94/1]
          Length = 348

 Score =  130 bits (326), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 96/343 (27%), Positives = 168/343 (48%), Gaps = 55/343 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           + VL GG S+E +VS+ S     +AL+ A ++   + V R+   +L+             
Sbjct: 3   IVVLFGGRSAEHDVSVLSATNVMNALDPAKYEAVPVFVTRAGQWLLSRFVNGALEKPSSG 62

Query: 50  --------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                     K D+ F VLHG  GEDG VQ + ++  +P    G
Sbjct: 63  AELCLVPGGCGRAIVVPDAGAPYEADKIDIIFPVLHGLHGEDGAVQGLAQVARVPLAGCG 122

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSL 139
           I  SA ++DK  +K++V+  G+    S+ + R  + +    +  +  P  IKP + GSS+
Sbjct: 123 IPGSANALDKDIAKRLVNEAGLSTAKSVTITREEVPAFSALEQALGLPIFIKPARQGSSV 182

Query: 140 GI--IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD--ASLDVTEIA-- 193
           G+  +V + D    +    S  + + D+LL E+++   E+ CGV+ D   +L V+     
Sbjct: 183 GVHKVVTEADYQAAM----SDGFTYDDKLLAEEFIQAREVECGVLEDEGGALFVSRAGEI 238

Query: 194 VPKSD--FYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
           VP     FYSY+ KY   + T + +PA++P  +  E++ +A  A + +GC  ++R DF F
Sbjct: 239 VPAESHCFYSYDAKYIDADGTEIKVPAELPEQVENEIRAIAAKAFRVLGCDSMARVDF-F 297

Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
               R++   EIN  PG T +S++ ++ A +G S+ E++  +V
Sbjct: 298 VTADRRIVLNEINTIPGFTDMSMYSKVMAVSGVSYPEIINRLV 340


>gi|149006741|ref|ZP_01830427.1| D-alanylalanine synthetase [Streptococcus pneumoniae SP18-BS74]
 gi|147761656|gb|EDK68620.1| D-alanylalanine synthetase [Streptococcus pneumoniae SP18-BS74]
          Length = 347

 Score =  130 bits (326), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 100/331 (30%), Positives = 160/331 (48%), Gaps = 43/331 (12%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQ--------------------------- 35
           +L GG S+EREVS+ S ++   A+    F V                             
Sbjct: 7   LLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDFIKTQEFSHAPGQEDRLMT 66

Query: 36  ---IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
              ID D+ V     + +  + F VLHG  GEDG VQ  LE+L++PY    IL+S+L+MD
Sbjct: 67  NETIDWDKKVAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLAMD 126

Query: 93  KMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           K+ +K+V+ S G+   P +       V     + +  ++ P   KP   GSS+GI   K 
Sbjct: 127 KITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLAYPVFTKPSNMGSSVGI--SKS 184

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYE 203
           +    L      ++ +  ++L+EQ V+  E+  G++G+  +  T   E+ V    FY Y+
Sbjct: 185 ENQEELRQALKLAFRYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVTFYDYD 243

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            KY     T  +PAKI  D+   +++ A  A +AIG  G+SR DF +     ++F  E+N
Sbjct: 244 AKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDFFYTDKG-EIFLNELN 302

Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             PG T  S++P +    G S+ EL+  +V+
Sbjct: 303 TMPGFTQWSMYPLLWDNMGISYPELIERLVD 333


>gi|168488615|ref|ZP_02712814.1| D-alanine--D-alanine ligase (D-alanylalanine
           synthetase)(D-Ala-D-Ala ligase) [Streptococcus
           pneumoniae SP195]
 gi|221232408|ref|YP_002511561.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae ATCC 700669]
 gi|225855101|ref|YP_002736613.1| D-alanyl-alanine synthetase A [Streptococcus pneumoniae JJA]
 gi|298230136|ref|ZP_06963817.1| D-alanyl-alanine synthetase A [Streptococcus pneumoniae str. Canada
           MDR_19F]
 gi|298254425|ref|ZP_06978011.1| D-alanyl-alanine synthetase A [Streptococcus pneumoniae str. Canada
           MDR_19A]
 gi|298503415|ref|YP_003725355.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae TCH8431/19A]
 gi|254767740|sp|B8ZM66|DDL_STRPJ RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|254767742|sp|C1CFP2|DDL_STRZJ RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|6634564|emb|CAB64463.1| D-ala,D-ala ligase [Streptococcus pneumoniae]
 gi|6634569|emb|CAB64467.1| D-ala,D-ala ligase [Streptococcus pneumoniae]
 gi|183572621|gb|EDT93149.1| D-alanine--D-alanine ligase (D-alanylalanine
           synthetase)(D-Ala-D-Ala ligase) [Streptococcus
           pneumoniae SP195]
 gi|220674869|emb|CAR69444.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae ATCC 700669]
 gi|225724220|gb|ACO20073.1| D-alanine--D-alanine ligase (D-alanylalanine
           synthetase)(D-Ala-D-Ala ligase) [Streptococcus
           pneumoniae JJA]
 gi|298239010|gb|ADI70141.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae TCH8431/19A]
 gi|332072500|gb|EGI82983.1| D-alanine--D-alanine ligase family protein [Streptococcus
           pneumoniae GA17570]
          Length = 347

 Score =  130 bits (326), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 100/331 (30%), Positives = 160/331 (48%), Gaps = 43/331 (12%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQ--------------------------- 35
           +L GG S+EREVS+ S ++   A+    F V                             
Sbjct: 7   LLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDSIKTQEFSHAPGQEDRLMT 66

Query: 36  ---IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
              ID D+ V     + +  + F VLHG  GEDG VQ  LE+L++PY    IL+S+L+MD
Sbjct: 67  NETIDWDKKVAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLAMD 126

Query: 93  KMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           K+ +K+V+ S G+   P +       V     + +  ++ P   KP   GSS+GI   K 
Sbjct: 127 KITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLAYPVFTKPSNMGSSVGI--SKS 184

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYE 203
           +    L      ++ +  ++L+EQ V+  E+  G++G+  +  T   E+ V    FY Y+
Sbjct: 185 ENQEELRQALKLAFRYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVAFYDYD 243

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            KY     T  +PAKI  D+   +++ A  A +AIG  G+SR DF +     ++F  E+N
Sbjct: 244 AKYIDNKVTMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDFFYTDKG-EIFLNELN 302

Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             PG T  S++P +    G S+ EL+  +V+
Sbjct: 303 TMPGFTQWSMYPLLWENMGISYPELIERLVD 333


>gi|126651496|ref|ZP_01723700.1| D-alanylalanine synthetase [Bacillus sp. B14905]
 gi|126591749|gb|EAZ85845.1| D-alanylalanine synthetase [Bacillus sp. B14905]
          Length = 381

 Score =  130 bits (326), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 101/342 (29%), Positives = 167/342 (48%), Gaps = 62/342 (18%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------DR----------- 40
           + +L GG S+E EVSLS+ +A   AL    ++V  I +         DR           
Sbjct: 27  IGLLYGGKSAEHEVSLSTARAVTGALNFEEYEVYPIFITSEGEWRRGDRLEKPVSTIEEL 86

Query: 41  -------------SVGLVLAHLKP---DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84
                        +  L+  H K    D+ F +LHG  GEDG VQ +LE+L +PY  +G+
Sbjct: 87  QFGDNTTILENNITDFLIDEHGKSVQFDVIFPLLHGTNGEDGTVQGLLEVLNLPYVGNGV 146

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVNR--FTMDSQHLISP-------PYVIKPLKG 135
           LAS+  MDK+  KQ+    G+P  P     R  +  + Q +I         P  +KP   
Sbjct: 147 LASSAGMDKVVMKQLFEIAGLPQVPYTYFIRSEWKNEQQAIIERCEERLTWPMFVKPANL 206

Query: 136 GSSLGIIVIKKDQSIPLDLLQSS---SWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192
           GSS+GI      ++   D L+ +   +  +  ++++EQ +   E+   V+G+   D  E+
Sbjct: 207 GSSVGI-----SKATSRDELKKAIEVALQYDRKIVVEQGIIAREIELAVLGN---DYPEV 258

Query: 193 AVPK-----SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           +VP      ++FY Y+ KY+  ++  ++PA++P +    ++ LA  A +AI   G+ R+D
Sbjct: 259 SVPGEIKPVTEFYDYDSKYTDGSTALIIPAELPEETESSLKDLAKRAFKAIDGSGLVRAD 318

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           F F      V+  E+N  PG TPVS++P +  +   S+ EL+
Sbjct: 319 F-FVTADHSVYINEVNTLPGFTPVSMYPLLWQHTNVSYPELI 359


>gi|256820198|ref|YP_003141477.1| D-alanyl-alanine synthetase A [Capnocytophaga ochracea DSM 7271]
 gi|256581781|gb|ACU92916.1| D-alanine/D-alanine ligase [Capnocytophaga ochracea DSM 7271]
          Length = 325

 Score =  130 bits (326), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 92/322 (28%), Positives = 156/322 (48%), Gaps = 34/322 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------------------- 40
           +A++MGG S+E  VSL S    A  L    +    + +DR                    
Sbjct: 5   IAIIMGGYSNEAPVSLKSAAVVAKNLNQDKYVPYPVRIDRDKWVYVDTQNNEHPIDKNDF 64

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           SV +    +  D  FN +HG  GEDG +QA   L+ +P T   + ASAL+ +K     V+
Sbjct: 65  SVTVNGRKITFDAVFNAIHGTPGEDGYLQAYFNLIGLPLTGCSMYASALTFNKRDMLSVL 124

Query: 101 SSCGVPVCPSILVNR----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
              G+   PS  +N+     T D    +  P  +K  K GSS G+  + ++  +P+ +  
Sbjct: 125 KPFGILSAPSYYLNKGEDYNTADIVAKVGLPCFVKANKSGSSFGVYKVYEEAQLPMYI-- 182

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDAS----LDVTEIAVPKSDFYSYELKYSSLNST 212
             ++   D++LIE ++ G E++ GV+        L +TEI V ++DF+ Y+ KY+   S 
Sbjct: 183 DKAFEVDDEILIETFLKGTEISIGVINYRGKIKVLPMTEI-VSENDFFDYDAKYNG-KSQ 240

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
            + PA++  ++  ++  LA   ++ +   G SRS+F+   +    + LE+N  PG++  S
Sbjct: 241 EITPARLSAEMTAKINALAERVYRLLKMEGFSRSEFII--VGDTPYLLEMNTTPGLSEAS 298

Query: 273 IFPEMAAYAGYSFRELLLWMVE 294
           + P+ A  AG S  EL    +E
Sbjct: 299 LLPQQAKVAGISLEELFESEIE 320


>gi|195977778|ref|YP_002123022.1| D-alanine--D-alanine ligase Ddl [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
 gi|226729273|sp|B4U1Z2|DDL_STREM RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|195974483|gb|ACG62009.1| D-alanine--D-alanine ligase Ddl [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
          Length = 348

 Score =  130 bits (326), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 94/330 (28%), Positives = 167/330 (50%), Gaps = 43/330 (13%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH-------------- 48
           +L GG S+EREVS+ S ++   A++   F V    + ++   +                 
Sbjct: 8   LLYGGRSAEREVSVLSAESVMRAIDYTKFFVKTYFISQTGQFIKTQEFSSQPAATERLMT 67

Query: 49  ---------LKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
                    ++P        + F VLHG  GEDG +Q  LE+L++PY  + IL+S+++MD
Sbjct: 68  NATIRLEQQIRPSDIYEEGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGTNILSSSVAMD 127

Query: 93  KMRSKQVVSSCGVP-VCPSILV-----NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           K+ +K+V+ S  +P V  ++ +     +R   +++ ++S P  +KP   GSS+GI   + 
Sbjct: 128 KITTKRVLESADIPQVAYTVYIEGQDLDRCLAETEAVLSYPVFVKPANMGSSVGISKAES 187

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYE 203
           ++ +   +L + +++   ++LIEQ V   E+  G++G+  +  T   E+ V   DFY Y+
Sbjct: 188 EEELRAAILLALTYD--SRILIEQGVLAREIEVGLLGNTDVKSTLPGEV-VKNVDFYDYQ 244

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            KY     T  +PA I       ++  A  A +AIG  G+SR DF       +++  E+N
Sbjct: 245 AKYIDNEITMAIPAAIDESAMTSMRTYAETAFKAIGACGLSRCDFFLGQ-DGQIYLNELN 303

Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
             PG T  S++P +  + G S+ EL+  +V
Sbjct: 304 TMPGFTQWSMYPLLWEHMGLSYAELIEELV 333


>gi|225859426|ref|YP_002740936.1| D-alanyl-alanine synthetase A [Streptococcus pneumoniae 70585]
 gi|225721700|gb|ACO17554.1| D-alanine--D-alanine ligase (D-alanylalanine
           synthetase)(D-Ala-D-Ala ligase) [Streptococcus
           pneumoniae 70585]
          Length = 347

 Score =  130 bits (326), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 100/331 (30%), Positives = 160/331 (48%), Gaps = 43/331 (12%)

Query: 3   VLMGGISSEREVSLSSGKACASAL------------------------------EDAGFK 32
           +L GG S+EREVS+ S ++   A+                              ED    
Sbjct: 7   LLYGGRSAEREVSVLSAESVMRAVNYDRFIVKTFFISQSGDSIKTQEFSHAPGQEDRLMT 66

Query: 33  VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
              ID D+ V     + +  + F VLHG  GEDG VQ  LE+L++PY    IL+S+L+MD
Sbjct: 67  NETIDWDKKVAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLAMD 126

Query: 93  KMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           K+ +K+V+ S G+   P +       V     + +  ++ P   KP   GSS+GI   K 
Sbjct: 127 KITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLAYPVFTKPSNMGSSVGI--SKS 184

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYE 203
           +    L      ++ +  ++L+EQ V+  E+  G++G+  +  T   E+ V    FY Y+
Sbjct: 185 ENQEELRQALKLAFRYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVAFYDYD 243

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            KY     T  +PAKI  D+   +++ A  A +AIG  G+SR DF +     ++F  E+N
Sbjct: 244 AKYIDNKVTMDIPAKISDDVVAVMRQNAEAAFRAIGGLGLSRCDFFYTDKG-EIFLNELN 302

Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             PG T  S++P +    G S+ EL+  +V+
Sbjct: 303 TMPGFTQWSMYPLLWENMGISYPELIERLVD 333


>gi|111115023|ref|YP_709641.1| D-alanine--D-alanine ligase [Borrelia afzelii PKo]
 gi|216263979|ref|ZP_03435973.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase) [Borrelia
           afzelii ACA-1]
 gi|122956408|sp|Q0SNW3|DDL_BORAP RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|110890297|gb|ABH01465.1| D-alanine--D-alanine ligase [Borrelia afzelii PKo]
 gi|215980023|gb|EEC20845.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase) [Borrelia
           afzelii ACA-1]
          Length = 361

 Score =  130 bits (326), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 87/344 (25%), Positives = 172/344 (50%), Gaps = 50/344 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAG-FKVSQIDVDRSVGL--------------- 44
           + ++ GG+S E E+S  S  +   AL D   + +    +D+  G+               
Sbjct: 5   LMLIFGGVSFEHEISCKSAYSVYLALLDLNKYNIYSAYIDKCTGIWYLLDSVSDPPKPID 64

Query: 45  --VL---------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87
             VL                +L+ D+ F V+HG  GEDG +Q +L++++IP   +GI+ S
Sbjct: 65  TDVLPIVSLLPGFGIFSNNKNLEIDVVFPVVHGRTGEDGAIQGVLKVMDIPCVGAGIIGS 124

Query: 88  ALSMDKMRSKQVVSSCGVPVCPSILVNR--FTMDSQHL-------ISPPYVIKPLKGGSS 138
           A+S +K   K ++ S  +P+ P I   +  +++D + +       +  P ++KP   GSS
Sbjct: 125 AISSNKYFCKLLLKSFNIPIVPFIGFRQYDYSLDKEEIKRNVKEVLGYPVIVKPAVLGSS 184

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV---TEIAVP 195
           +GI V   +  I   + ++  ++    ++IE++++  E+ C ++G+  + +    E+ V 
Sbjct: 185 IGINVAYSENQIESCIEEALKYDL--TIVIEKFIEAREIECSIIGNEKMKIFSPGEVVVQ 242

Query: 196 KSDFYSYELKYSSLNSTHV---LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
              FY Y+ KYS +    +   +PA +  +    ++  AFL ++ +  RG++R DF  + 
Sbjct: 243 DFIFYDYDAKYSVIPGNSIIFNIPAHLETNQLLSIKEYAFLVYKNLELRGMARVDFFVEK 302

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            S  ++  EIN  PG T +S+F +M ++ G  F++L+  +++ A
Sbjct: 303 KSGTIYLNEINTIPGFTDISMFSKMCSHDGLQFKDLIDNLIDYA 346


>gi|300774222|ref|ZP_07084089.1| D-alanine--D-alanine ligase [Sphingobacterium spiritivorum ATCC
           33861]
 gi|300758901|gb|EFK55730.1| D-alanine--D-alanine ligase [Sphingobacterium spiritivorum ATCC
           33861]
          Length = 334

 Score =  130 bits (326), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 98/320 (30%), Positives = 163/320 (50%), Gaps = 45/320 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALE-------------DAGFKVSQIDVDRSVG---- 43
           +A+L GG + E EVS  S     S L+             D  F V++  V  +V     
Sbjct: 5   IALLTGGYTGEAEVSFKSSAFVYSQLDHNKYDVYLITITKDHWFHVNEQGVKFTVNRENF 64

Query: 44  -LVLAH--LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
            L L H  ++ DLAF ++HG  GEDG +Q   ++L+IPYT    L S+L+M+K  +K V+
Sbjct: 65  TLPLDHETIRFDLAFILIHGTPGEDGRLQGYFDMLDIPYTSCDALTSSLTMNKGYTKAVL 124

Query: 101 SSCGVP---VCPSILV-----NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152
           +  G+P   +  S+L+            Q  +S PY +KP  GGSS+G+  +K ++ +  
Sbjct: 125 A--GIPDLHMAKSVLLFEAQRAEAVATVQANLSLPYFVKPNAGGSSIGMTKVKTNEELAE 182

Query: 153 DLLQS-SSWNHGDQLLIEQYVDGIELTCGVMGDAS-----LDVTEIAVPKSDFYSYELKY 206
            + ++  + N G Q+++E++V G E + G+  +       L  TE+   + +F+ YE KY
Sbjct: 183 AIDKAFDAENTGKQVIVEEFVTGREFSQGIYRNVEGLLTVLPATEVKTTR-EFFDYEAKY 241

Query: 207 SSLNSTHVLPAKIPLDIYKEVQ-RLAFLAHQA---IGCRGISRSDFLFDPLSRKVFWLEI 262
           +   +  + PA    D+ +E Q R+A L  +    + C+G+ R DF  +  + K +++EI
Sbjct: 242 TPGLTEEITPA----DLTEEQQSRIAALLKEVYIRLNCKGMVRIDFFLENGTDKFYFIEI 297

Query: 263 NVQPGMTPVSIFPEMAAYAG 282
           N  PG T  S  P+    AG
Sbjct: 298 NTIPGQTAQSFIPQQVRAAG 317


>gi|254702007|ref|ZP_05163835.1| D-alanine--D-alanine ligase A [Brucella suis bv. 5 str. 513]
 gi|254706556|ref|ZP_05168384.1| D-alanine--D-alanine ligase A [Brucella pinnipedialis M163/99/10]
 gi|254714330|ref|ZP_05176141.1| D-alanine--D-alanine ligase A [Brucella ceti M644/93/1]
 gi|254717229|ref|ZP_05179040.1| D-alanine--D-alanine ligase A [Brucella ceti M13/05/1]
 gi|256061348|ref|ZP_05451492.1| D-alanine--D-alanine ligase A [Brucella neotomae 5K33]
 gi|256160007|ref|ZP_05457716.1| D-alanine--D-alanine ligase A [Brucella ceti M490/95/1]
 gi|256255228|ref|ZP_05460764.1| D-alanine--D-alanine ligase A [Brucella ceti B1/94]
 gi|260168962|ref|ZP_05755773.1| D-alanyl-alanine synthetase A [Brucella sp. F5/99]
 gi|261219047|ref|ZP_05933328.1| D-alanine-D-alanine ligase A [Brucella ceti M13/05/1]
 gi|261222425|ref|ZP_05936706.1| D-alanine-D-alanine ligase A [Brucella ceti B1/94]
 gi|261314015|ref|ZP_05953212.1| D-alanine-D-alanine ligase A [Brucella pinnipedialis M163/99/10]
 gi|261322107|ref|ZP_05961304.1| D-alanine-D-alanine ligase A [Brucella ceti M644/93/1]
 gi|261325350|ref|ZP_05964547.1| D-alanine-D-alanine ligase A [Brucella neotomae 5K33]
 gi|261752574|ref|ZP_05996283.1| D-alanine-D-alanine ligase A [Brucella suis bv. 5 str. 513]
 gi|261758455|ref|ZP_06002164.1| D-alanine-D-alanine ligase/VANA/B/C [Brucella sp. F5/99]
 gi|265998392|ref|ZP_06110949.1| D-alanine-D-alanine ligase A [Brucella ceti M490/95/1]
 gi|260921009|gb|EEX87662.1| D-alanine-D-alanine ligase A [Brucella ceti B1/94]
 gi|260924136|gb|EEX90704.1| D-alanine-D-alanine ligase A [Brucella ceti M13/05/1]
 gi|261294797|gb|EEX98293.1| D-alanine-D-alanine ligase A [Brucella ceti M644/93/1]
 gi|261301330|gb|EEY04827.1| D-alanine-D-alanine ligase A [Brucella neotomae 5K33]
 gi|261303041|gb|EEY06538.1| D-alanine-D-alanine ligase A [Brucella pinnipedialis M163/99/10]
 gi|261738439|gb|EEY26435.1| D-alanine-D-alanine ligase/VANA/B/C [Brucella sp. F5/99]
 gi|261742327|gb|EEY30253.1| D-alanine-D-alanine ligase A [Brucella suis bv. 5 str. 513]
 gi|262552860|gb|EEZ08850.1| D-alanine-D-alanine ligase A [Brucella ceti M490/95/1]
          Length = 353

 Score =  130 bits (326), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 96/343 (27%), Positives = 168/343 (48%), Gaps = 55/343 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           + VL GG S+E +VS+ S     +AL+ A ++   + V R+   +L+             
Sbjct: 8   IVVLFGGRSAEHDVSVLSATNVMNALDPAKYEAVPVFVTRAGQWLLSRFVNGALEKPSSG 67

Query: 50  --------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                     K D+ F VLHG  GEDG VQ + ++  +P    G
Sbjct: 68  AELCLVPGGCGRAIVVPDAGAPYEADKIDIIFPVLHGLHGEDGAVQGLAQVARVPLAGCG 127

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSL 139
           I  SA ++DK  +K++V+  G+    S+ + R  + +    +  +  P  IKP + GSS+
Sbjct: 128 IPGSANALDKDIAKRLVNEAGLSTAKSVTITREEVPAFSALEQALGLPIFIKPARQGSSV 187

Query: 140 GI--IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD--ASLDVTEIA-- 193
           G+  +V + D    +    S  + + D+LL E+++   E+ CGV+ D   +L V+     
Sbjct: 188 GVHKVVTEADYQAAM----SDGFTYDDKLLAEEFIQAREVECGVLEDEGGALFVSRAGEI 243

Query: 194 VPKSD--FYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
           VP     FYSY+ KY   + T + +PA++P  +  E++ +A  A + +GC  ++R DF F
Sbjct: 244 VPAESHCFYSYDAKYIDADGTEIKVPAELPEQVENEIRAIAAKAFRVLGCDSMARVDF-F 302

Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
               R++   EIN  PG T +S++ ++ A +G S+ E++  +V
Sbjct: 303 VTADRRIVLNEINTIPGFTDMSMYSKVMAVSGVSYPEIINRLV 345


>gi|288779631|dbj|BAI70383.1| D-alanyl-D-alanine ligase [Streptomyces lavendulae subsp.
           lavendulae]
          Length = 345

 Score =  129 bits (325), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 101/335 (30%), Positives = 155/335 (46%), Gaps = 53/335 (15%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP----------- 51
           +L GG S ER+VSL+SG + A AL + G +V  +D      ++   L+P           
Sbjct: 5   ILCGGESPERDVSLASGSSVARALLERGHEVLLVDPAAEEPVLAGPLRPGDVVDGFEVGK 64

Query: 52  -------------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYT 80
                                          D+ F  LHG +GEDG VQ  LE   + +T
Sbjct: 65  EPPAGHERHGLRRRMAAAFDGGPALALLRDADVVFTALHGGWGEDGWVQERLEAAGVRFT 124

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSIL----VNRFTMDSQHLISP-PYVIKPLKG 135
            +   A A +  K R++ V+++ GVPV    L     +    + + L++  P V KP+  
Sbjct: 125 GADSTACAAAWHKERAQAVLAAAGVPVTERALWPAGTDGVPQEVRRLVAAGPVVAKPVAD 184

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195
           GSS  + V + D    L+ L       G +LL+E ++ G E T GV+G   L V EI + 
Sbjct: 185 GSS--VSVHRADSLAELERLAPEMRADGAELLVEPFLPGREFTVGVIGGQVLPVIEIEL- 241

Query: 196 KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC--RGISRSDFLFDPL 253
            +  + Y  KY     + V PA IP +    +Q+LA  AH+A+G      SR+DF  D  
Sbjct: 242 STPLFDYAAKYQPGAVSEVCPALIPEEFASRLQQLALRAHEALGFGPHTYSRTDFRCDAT 301

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
              +  LE+N  PG+T  S+ P  A+ AG+++ +L
Sbjct: 302 GEPMC-LEVNALPGLTATSLLPLAASGAGWTYADL 335


>gi|6634559|emb|CAB64459.1| D-ala,D-ala ligase [Streptococcus pneumoniae]
          Length = 347

 Score =  129 bits (325), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 100/331 (30%), Positives = 160/331 (48%), Gaps = 43/331 (12%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQ--------------------------- 35
           +L GG S+EREVS+ S ++   A+    F V                             
Sbjct: 7   LLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDSIKTQEFSHAPGQEDRLMT 66

Query: 36  ---IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
              ID D+ V     + +  + F VLHG  GEDG VQ  LE+L++PY    IL+S+L+MD
Sbjct: 67  NETIDWDKKVAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLAMD 126

Query: 93  KMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           K+ +K+V+ S G+   P +       V     + +  ++ P   KP   GSS+GI   K 
Sbjct: 127 KITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLAYPVFTKPSNMGSSVGI--SKS 184

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYE 203
           +    L      ++ +  ++L+EQ V+  E+  G++G+  +  T   E+ V    FY Y+
Sbjct: 185 ENQEELRQALKLAFRYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVAFYDYD 243

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            KY     T  +PAKI  D+   +++ A  A +AIG  G+SR DF +     ++F  E+N
Sbjct: 244 AKYIDNKVTMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDFFYTDKG-EIFLNELN 302

Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             PG T  S++P +    G S+ EL+  +V+
Sbjct: 303 TMPGFTQWSMYPLLWDNMGISYPELIERLVD 333


>gi|213961705|ref|ZP_03389971.1| D-ala D-ala ligase [Capnocytophaga sputigena Capno]
 gi|213955494|gb|EEB66810.1| D-ala D-ala ligase [Capnocytophaga sputigena Capno]
          Length = 325

 Score =  129 bits (325), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 92/322 (28%), Positives = 156/322 (48%), Gaps = 34/322 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------------------- 40
           +A++MGG S+E  VSL S    A  L    +    + +DR                    
Sbjct: 5   IAIIMGGYSNEAPVSLKSAAVVAKNLNQDKYVPYLVRIDRDKWVYVDAQNNEHPIDKNDF 64

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           SV +    +  D  FN +HG  GEDG +QA   L+ +P T   + ASAL+ +K     V+
Sbjct: 65  SVTVNGRKITFDAVFNAIHGTPGEDGYLQAYFNLIGLPLTGCSMYASALTFNKRDMLSVL 124

Query: 101 SSCGVPVCPSILVNR----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
              G+   PS  +N+     T D    +  P  +K  K GSS G+  + ++  +P+ +  
Sbjct: 125 KPFGILSAPSYYLNKGENYNTADIVAKVGLPCFVKANKSGSSFGVYKVYEEAQLPMYI-- 182

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDAS----LDVTEIAVPKSDFYSYELKYSSLNST 212
             ++   D++LIE ++ G E++ GV+        L +TEI V ++DF+ Y+ KY+   S 
Sbjct: 183 DKAFEVDDEILIESFLKGTEISIGVINYRGEIKVLPMTEI-VSENDFFDYDAKYNG-KSQ 240

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
            + PA++  ++  ++  LA   ++ +   G SRS+F+   +    + LE+N  PG++  S
Sbjct: 241 EITPARLSAEMTAKINALAERVYRLLKMEGFSRSEFII--VGDTPYLLEMNTTPGLSEAS 298

Query: 273 IFPEMAAYAGYSFRELLLWMVE 294
           + P+ A  AG S  EL    +E
Sbjct: 299 LLPQQAKVAGISLEELFESEIE 320


>gi|56751739|ref|YP_172440.1| D-alanyl-alanine synthetase A [Synechococcus elongatus PCC 6301]
 gi|81301184|ref|YP_401392.1| D-alanyl-alanine synthetase A [Synechococcus elongatus PCC 7942]
 gi|81561775|sp|Q5N1A0|DDL_SYNP6 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|123556293|sp|Q31KL4|DDL_SYNE7 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|56686698|dbj|BAD79920.1| D-alanyl-D-alanine ligase [Synechococcus elongatus PCC 6301]
 gi|81170065|gb|ABB58405.1| D-alanine--D-alanine ligase [Synechococcus elongatus PCC 7942]
          Length = 347

 Score =  129 bits (325), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 107/342 (31%), Positives = 172/342 (50%), Gaps = 53/342 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAG----FKVSQIDVDRSVGL--------VLAH 48
           + +L GG S E EVS+ S  A ASAL D      ++V    +D+  G         VLA+
Sbjct: 6   VGLLFGGRSGEHEVSIRSAAAIASALADPSNRDRYQVLPFYIDKEGGWHSGETAAQVLAN 65

Query: 49  LKP-------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
            KP                   ++ F +LHG  GEDG +Q +L L++ P+  SG+L SAL
Sbjct: 66  QKPLFVEEPSDRWQFPADCRDVEVWFPILHGPNGEDGTIQGLLTLMQRPFVGSGVLGSAL 125

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------------QHLISPPYVIKPLKGGS 137
            MDK+  KQ  +   +P    + VNR  + S            +  +  P  +KP   GS
Sbjct: 126 GMDKIAMKQAFAQASLPQVAYVAVNRSQVFSDPCRYTSLLEQIETELGYPCFVKPANLGS 185

Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGD----ASLDVTEI 192
           S+GI  ++      L+     +     +L+IE  +D   E+ C V+G+    AS+ + EI
Sbjct: 186 SVGIAKVRD--RAELEAALDQAAALDRRLIIEAAIDNPREVECAVLGNDYPQASI-LGEI 242

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
               SDFY YE KY+   +  ++PA++  ++ +++Q LA  A QA+   G+SR DF  D 
Sbjct: 243 TY-DSDFYDYETKYTDGKAQLLIPAQLSAELQQKLQELAIAAFQAVDASGLSRLDFFLDS 301

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
              ++F  EIN  PG T +S++P++ A +G +F +L+  +++
Sbjct: 302 QG-QIFINEINTLPGFTALSMYPQLWAASGVAFPDLVHRLIQ 342


>gi|168483459|ref|ZP_02708411.1| D-alanine--D-alanine ligase (D-alanylalanine
           synthetase)(D-Ala-D-Ala ligase) [Streptococcus
           pneumoniae CDC1873-00]
 gi|172043156|gb|EDT51202.1| D-alanine--D-alanine ligase (D-alanylalanine
           synthetase)(D-Ala-D-Ala ligase) [Streptococcus
           pneumoniae CDC1873-00]
          Length = 347

 Score =  129 bits (325), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 101/331 (30%), Positives = 161/331 (48%), Gaps = 43/331 (12%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKV----------------------------- 33
           +L GG S+EREVS+ S ++   A+    F V                             
Sbjct: 7   LLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDFIKTQEFGQTPGQEDRLMT 66

Query: 34  -SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
            + ID D+ V     + +  + F VLHG  GEDG VQ  LE+L++PY    IL+S+L+MD
Sbjct: 67  NATIDWDKKVAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLAMD 126

Query: 93  KMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           K+ +K+V+ S G+   P +       V     + +  ++ P   KP   GSS+GI   K 
Sbjct: 127 KITTKRVLESVGIAQVPYVAIVEGDDVTAKIDEVEEKLAYPVFTKPSNMGSSVGI--SKS 184

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYE 203
           +    L      ++ +  ++L+EQ V+  E+  G++G+  +  T   E+ V    FY Y+
Sbjct: 185 ENQEELRQALELAFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVAFYDYD 243

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            KY     T  +PAKI  D+   +++ A  A +AIG  G+SR DF +     +VF  E+N
Sbjct: 244 AKYIDNKITMDIPAKISDDVIAVMRQNAETAFRAIGGLGLSRCDFFYTDKG-EVFLNELN 302

Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             PG T  S++P +    G S+ EL+  +V+
Sbjct: 303 TMPGFTQWSMYPLLWDNMGISYPELIERLVD 333


>gi|306824762|ref|ZP_07458106.1| D-alanine-D-alanine ligase [Streptococcus sp. oral taxon 071 str.
           73H25AP]
 gi|304432973|gb|EFM35945.1| D-alanine-D-alanine ligase [Streptococcus sp. oral taxon 071 str.
           73H25AP]
          Length = 347

 Score =  129 bits (325), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 99/331 (29%), Positives = 161/331 (48%), Gaps = 43/331 (12%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKV----------------------------- 33
           +L GG S+EREVS+ S ++   A+    F V                             
Sbjct: 7   LLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDFIKTQEFSQTPGQEDRLMT 66

Query: 34  -SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
            + ID D+ +     + +  + F VLHG  GEDG VQ  LE+L++PY    IL+S+L+MD
Sbjct: 67  NATIDWDKKIAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLAMD 126

Query: 93  KMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           K+ +K+V+ S G+   P +       V     + +  ++ P   KP   GSS+GI   K 
Sbjct: 127 KITTKRVLESVGIAQVPYVAIVEGDDVTAKIAEVEEKLTYPVFTKPSNMGSSVGI--SKS 184

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYE 203
           +    L      ++ +  ++L+EQ V+  E+  G++G+  +  T   E+ V    FY Y+
Sbjct: 185 ENQEELRQALELAFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVAFYDYD 243

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            KY     T  +PAKI  D+   +++ A  A +AIG  G+SR DF +     ++F  E+N
Sbjct: 244 AKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDFFYTD-KGEIFLNELN 302

Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             PG T  S++P +    G S+ EL+  +V+
Sbjct: 303 TMPGFTQWSMYPLLWDNMGISYPELIERLVD 333


>gi|254424655|ref|ZP_05038373.1| D-ala D-ala ligase N-terminal domain protein, putative
           [Synechococcus sp. PCC 7335]
 gi|196192144|gb|EDX87108.1| D-ala D-ala ligase N-terminal domain protein, putative
           [Synechococcus sp. PCC 7335]
          Length = 364

 Score =  129 bits (325), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 78/264 (29%), Positives = 135/264 (51%), Gaps = 18/264 (6%)

Query: 45  VLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCG 104
            L H+  D+ F V+HG  GEDG +Q + E+LE+PY   G+L S+L MDK+ SK   +  G
Sbjct: 96  ALGHI--DIWFPVIHGPNGEDGTLQGLFEVLEVPYVGCGVLGSSLGMDKLASKSAFAQAG 153

Query: 105 VPVCPSILVNRFTMDSQHLISP------------PYVIKPLKGGSSLGIIVIKKDQSIPL 152
           +P      V+R  + S   I P            P  +KP   GSS+GI      Q +  
Sbjct: 154 LPQVNYRGVSRAEIYSNPCIFPKLCDGIDEALGYPCFVKPANLGSSVGISKATNRQELET 213

Query: 153 DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK--SDFYSYELKYSSLN 210
            L  ++S++   ++++E  V   E+ C ++G+ +   + +   +  +DFY Y  KY+   
Sbjct: 214 ALDLAASYDR--RVIVETGVVAREIECSILGNDNPKASVLGETRFSTDFYDYAAKYTEGG 271

Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270
           +  ++P+ +   +   +Q +A  A QAI   G++R DF +   + ++   EIN  PG T 
Sbjct: 272 AELLIPSPVSDQVRDRIQEMAIAAFQAIDGSGLARVDFFYIEKTDQILINEINTMPGFTA 331

Query: 271 VSIFPEMAAYAGYSFRELLLWMVE 294
            S++P M   +G  F +L+  +++
Sbjct: 332 TSMYPMMWEASGIKFSDLVDKLIQ 355


>gi|148988718|ref|ZP_01820151.1| D-alanylalanine synthetase [Streptococcus pneumoniae SP6-BS73]
 gi|148997722|ref|ZP_01825286.1| D-alanylalanine synthetase [Streptococcus pneumoniae SP11-BS70]
 gi|149001955|ref|ZP_01826909.1| D-alanylalanine synthetase [Streptococcus pneumoniae SP14-BS69]
 gi|168575140|ref|ZP_02721103.1| D-alanine--D-alanine ligase (D-alanylalanine
           synthetase)(D-Ala-D-Ala ligase) [Streptococcus
           pneumoniae MLV-016]
 gi|194397559|ref|YP_002038285.1| D-alanyl-alanine synthetase A [Streptococcus pneumoniae G54]
 gi|237650677|ref|ZP_04524929.1| D-alanyl-alanine synthetase A [Streptococcus pneumoniae CCRI 1974]
 gi|237822435|ref|ZP_04598280.1| D-alanyl-alanine synthetase A [Streptococcus pneumoniae CCRI
           1974M2]
 gi|307068296|ref|YP_003877262.1| D-alanine-D-alanine ligase-like ATP-grasp enzyme [Streptococcus
           pneumoniae AP200]
 gi|226696391|sp|B5E721|DDL_STRP4 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|4009465|gb|AAC95435.1| D-Ala-D-Ala ligase [Streptococcus pneumoniae G54]
 gi|147756221|gb|EDK63263.1| D-alanylalanine synthetase [Streptococcus pneumoniae SP11-BS70]
 gi|147759764|gb|EDK66754.1| D-alanylalanine synthetase [Streptococcus pneumoniae SP14-BS69]
 gi|147925919|gb|EDK76994.1| D-alanylalanine synthetase [Streptococcus pneumoniae SP6-BS73]
 gi|183578923|gb|EDT99451.1| D-alanine--D-alanine ligase (D-alanylalanine
           synthetase)(D-Ala-D-Ala ligase) [Streptococcus
           pneumoniae MLV-016]
 gi|194357226|gb|ACF55674.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae G54]
 gi|301794652|emb|CBW37103.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae INV104]
 gi|306409833|gb|ADM85260.1| D-alanine-D-alanine ligase-like ATP-grasp enzyme [Streptococcus
           pneumoniae AP200]
 gi|332074006|gb|EGI84484.1| D-alanine--D-alanine ligase family protein [Streptococcus
           pneumoniae GA41301]
          Length = 347

 Score =  129 bits (325), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 100/331 (30%), Positives = 160/331 (48%), Gaps = 43/331 (12%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQ--------------------------- 35
           +L GG S+EREVS+ S ++   A+    F V                             
Sbjct: 7   LLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDFIKTQEFSHAPGQEDRLMT 66

Query: 36  ---IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
              ID D+ V     + +  + F VLHG  GEDG VQ  LE+L++PY    IL+S+L+MD
Sbjct: 67  NETIDWDKKVAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLAMD 126

Query: 93  KMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           K+ +K+V+ S G+   P +       V     + +  ++ P   KP   GSS+GI   K 
Sbjct: 127 KITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLAYPVFTKPSNMGSSVGI--SKS 184

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYE 203
           +    L      ++ +  ++L+EQ V+  E+  G++G+  +  T   E+ V    FY Y+
Sbjct: 185 ENQEELRQALKLAFRYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVAFYDYD 243

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            KY     T  +PAKI  D+   +++ A  A +AIG  G+SR DF +     ++F  E+N
Sbjct: 244 AKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDFFYTDKG-EIFLNELN 302

Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             PG T  S++P +    G S+ EL+  +V+
Sbjct: 303 TMPGFTQWSMYPLLWDNMGISYPELIERLVD 333


>gi|28378923|ref|NP_785815.1| D-alanine--D-alanine ligase [Lactobacillus plantarum WCFS1]
 gi|254557128|ref|YP_003063545.1| D-alanine-D-alanine ligase [Lactobacillus plantarum JDM1]
 gi|308181131|ref|YP_003925259.1| D-alanine--D-alanine ligase [Lactobacillus plantarum subsp.
           plantarum ST-III]
 gi|38257320|sp|Q88UV8|DDL_LACPL RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|28271760|emb|CAD64666.1| D-alanine--D-alanine ligase [Lactobacillus plantarum WCFS1]
 gi|254046055|gb|ACT62848.1| D-alanine-D-alanine ligase [Lactobacillus plantarum JDM1]
 gi|308046622|gb|ADN99165.1| D-alanine--D-alanine ligase [Lactobacillus plantarum subsp.
           plantarum ST-III]
          Length = 370

 Score =  129 bits (325), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 83/255 (32%), Positives = 147/255 (57%), Gaps = 15/255 (5%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+ + V+HGN GEDG +Q + +LL+ PY  SG+LASA S DK  +KQ+++   +     +
Sbjct: 97  DIFYPVVHGNLGEDGTLQGLFKLLKKPYVGSGVLASAASFDKDITKQILTHHHIQNTKYV 156

Query: 112 LV---NRFTMDSQHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
           +V   NR  M   +L   +     IKP   GSS+GI   + +Q   LD L + ++ +  +
Sbjct: 157 VVTPENRDQMTYAYLQAHVGDHLFIKPANQGSSIGIHKAENEQEY-LDGL-ADAFKYDYK 214

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTE---IAVPKSD-FYSYELKYSSLNS-THVLPAKI 219
           +L+E+ +D   E+ C ++G+ +   ++   I VPK+D FY Y  K+   +  T  LP ++
Sbjct: 215 ILVEESIDNPREVECSILGNENPKASKLGAIDVPKTDTFYDYNNKFVDASGVTFELPVEL 274

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279
           P D+ K +Q+++  A +A+G +G++R DFL      + +  EIN  PG T +S++P++  
Sbjct: 275 PADLTKRIQQMSLDAFKALGLKGMARVDFLVSE-DGEPYLGEINTLPGFTNISLYPKLWE 333

Query: 280 YAGYSFRELLLWMVE 294
            +G S+  L+  +++
Sbjct: 334 VSGISYTALIDQLIQ 348


>gi|309798670|ref|ZP_07692937.1| D-alanine--D-alanine ligase [Streptococcus infantis SK1302]
 gi|308117716|gb|EFO55125.1| D-alanine--D-alanine ligase [Streptococcus infantis SK1302]
          Length = 347

 Score =  129 bits (325), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 101/332 (30%), Positives = 162/332 (48%), Gaps = 45/332 (13%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQ--------------------------- 35
           +L GG S+EREVS+ S ++   A+    F V                             
Sbjct: 7   LLYGGRSAEREVSVLSAESVMRAVNYDRFAVKTFFISQSGDFIKTQEFTQTPGQDERLMT 66

Query: 36  ---IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
              ID D+ +     + +  + F VLHG  GEDG VQ  LE+L++PY    IL+S+L+MD
Sbjct: 67  NETIDWDKKIAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLAMD 126

Query: 93  KMRSKQVVSSCGVPVCPSI-------LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145
           K+ +K+V+ S G+   P +       L ++   + +  +S P   KP   GSS+GI   K
Sbjct: 127 KITTKRVLESAGIAQVPYVAIVEGDDLASKIA-EVEEKLSYPVFTKPSNMGSSVGI--SK 183

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSY 202
            +    L      ++ +  ++L+EQ V+  E+  G++G+  +  T   E+ V    FY Y
Sbjct: 184 SENKEELRQALELAFKYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVAFYDY 242

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
           + KY     T  +PAKI  D+   +++ A  A +AIG  G+SR DF +     +VF  E+
Sbjct: 243 DAKYIDNKITMDIPAKISDDVIALMRKNAETAFRAIGGLGLSRCDFFYTD-KGEVFLNEL 301

Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           N  PG T  S++P +    G S+ EL+  +V+
Sbjct: 302 NTMPGFTQWSMYPLLWDNMGISYPELIERLVD 333


>gi|163755784|ref|ZP_02162902.1| D-alanylalanine synthetase [Kordia algicida OT-1]
 gi|161324305|gb|EDP95636.1| D-alanylalanine synthetase [Kordia algicida OT-1]
          Length = 318

 Score =  129 bits (325), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 98/318 (30%), Positives = 158/318 (49%), Gaps = 34/318 (10%)

Query: 5   MGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DRSVGL 44
           MGG SSE  +SL +G    + L    +   ++ +                    D SV +
Sbjct: 1   MGGYSSEFAISLKTGTVVYNHLNPEKYNTYKVHIFRDKWVCVTTVGKEFPIDKNDFSVTI 60

Query: 45  VLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCG 104
               +  D  FN +HG+ GEDG +Q  LELLEIP+T  G+  +AL+ +K      +   G
Sbjct: 61  DDIKITFDCVFNAIHGSPGEDGFMQGYLELLEIPHTSCGMYQAALTFNKRDLLATLKPYG 120

Query: 105 VPVCPSILVNRF-TMDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160
           +    S  +N   ++D   +++    P  +K  K GSS G  V K  +   L    + + 
Sbjct: 121 IKCATSYYLNAGDSIDEAAIVAKVGLPCFVKANKAGSSFG--VSKVHEISDLKNAIAIAL 178

Query: 161 NHGDQLLIEQYVDGIELTCGVM---GDAS-LDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216
              D+++IE ++DG+E++ GV+   G+ + L +TEI V ++DF+ YE KY    S  + P
Sbjct: 179 KEDDEVIIESFLDGVEVSVGVINYKGNVTVLPITEI-VSENDFFDYEAKYLG-KSQEITP 236

Query: 217 AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPE 276
           A+I  ++  +V ++A   ++ +   G SRS+F+F     + + LE+N  PGMT  SI P+
Sbjct: 237 ARISPELSAKVAKVAKKIYEILKLEGFSRSEFIFK--DDEPYLLEVNTIPGMTEESILPQ 294

Query: 277 MAAYAGYSFRELLLWMVE 294
            A  AG S   L    VE
Sbjct: 295 QAKEAGISLEALFGNAVE 312


>gi|154503509|ref|ZP_02040569.1| hypothetical protein RUMGNA_01333 [Ruminococcus gnavus ATCC 29149]
 gi|153795609|gb|EDN78029.1| hypothetical protein RUMGNA_01333 [Ruminococcus gnavus ATCC 29149]
          Length = 351

 Score =  129 bits (325), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 100/343 (29%), Positives = 162/343 (47%), Gaps = 55/343 (16%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSV----------------GLVL 46
           VL GG+S+ER+VSL+S       L + G     +DV   +                GL +
Sbjct: 5   VLAGGLSTERDVSLASAAGICKTLLEKGHDAFLLDVFLGLENAPENLEDVFTLPGHGLEI 64

Query: 47  A----HLKPDLA----------------------------FNVLHGNFGEDGLVQAILEL 74
           A      +PDLA                            F  LHG  GE+G +QA  +L
Sbjct: 65  AKNISETEPDLAAVKASRPDQSDCFFGPNVIELCRLADMTFLGLHGGEGENGKLQASFDL 124

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--QHL-ISPPYVIK 131
           L I YT    L  A++MDK  +KQ+    GV     + + +   D   + L +S P V+K
Sbjct: 125 LGIRYTGPDSLGCAVAMDKGLTKQIFMEAGVDTPSGVCLYKEDSDCSLESLGLSFPVVVK 184

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P  GGSS+G+ ++  ++     L   +S+ + +++++E Y+ G E  CGV+   +L   E
Sbjct: 185 PCSGGSSIGVYIVNTEEEYRQAL--KNSFRYENEVVVETYIKGREFACGVIDGKALPPIE 242

Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
           I +PK+ ++ Y  KY +  +  V PA I  +I + ++ L   A QA+     SR+DF+ D
Sbjct: 243 I-IPKNGWFDYANKYQANATEEVCPADISEEIAERMKALTVRAFQALKLNVYSRADFILD 301

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
                ++ LE+N  PGMT  S+ P+ A   G  + +L   +++
Sbjct: 302 A-DGNLYCLEMNTLPGMTSASLLPKEALADGIEYGDLCELIIQ 343


>gi|257869519|ref|ZP_05649172.1| D-alanine-D-alanine ligase [Enterococcus gallinarum EG2]
 gi|257803683|gb|EEV32505.1| D-alanine-D-alanine ligase [Enterococcus gallinarum EG2]
          Length = 277

 Score =  129 bits (325), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 79/246 (32%), Positives = 129/246 (52%), Gaps = 7/246 (2%)

Query: 49  LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
           L  D  F  LHG  GE+G +QA  ++  I Y+ S    S L+MDK  +KQ++    +P  
Sbjct: 31  LNADFCFIALHGGIGENGKLQAFFDIYGIRYSGSHYKGSLLAMDKDIAKQLMKLNDIPT- 89

Query: 109 PSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168
           P   +  +    +   S P V+KP+  GSS+G+ +++  +     L ++  +N   +++I
Sbjct: 90  PKWQI--WEQGQEVYYSTPCVVKPIDNGSSIGVEIVENKEQFFKALKKAEKYNS--KVMI 145

Query: 169 EQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           EQ ++G E + GV+GD  L   EI +P+  FY+YE KY    +  + PA I  D+   + 
Sbjct: 146 EQKIEGREFSVGVLGDNVLPAIEI-IPQQGFYNYENKYQKGATEEITPADISSDLATRLS 204

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
            +  L ++ +G    SR D++       ++ +E N  PGMTP S+ P+ A   G SF EL
Sbjct: 205 EMTVLVNKVLGLSIYSRVDYIVTK-ELDIYCIEANSLPGMTPTSLLPQEAEAIGISFSEL 263

Query: 289 LLWMVE 294
              +VE
Sbjct: 264 CETIVE 269


>gi|295115202|emb|CBL36049.1| D-alanine--D-alanine ligase [butyrate-producing bacterium SM4/1]
          Length = 368

 Score =  129 bits (325), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 83/257 (32%), Positives = 130/257 (50%), Gaps = 15/257 (5%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+AF VLHG +GEDG +Q + EL  +PY   G+LASA+SMDK+ +K V  + GV     +
Sbjct: 109 DVAFPVLHGLYGEDGTIQGLFELARLPYVGCGVLASAVSMDKLYTKIVADTLGVRQAAYV 168

Query: 112 LVNR--------FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
            V R         T   +   S P  IKP   GSS G+        +   L +++   H 
Sbjct: 169 PVMRGELSHMESVTERVEKHFSYPVFIKPSNAGSSRGVSKASDRSELENGLREAA--KHD 226

Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK----SDFYSYELKYSSLNSTHVLPAKI 219
            ++L+E+ + G E+ C V G  + +V    V +    +DFY ++ KY +  S  V+  ++
Sbjct: 227 RKILVEEMIVGREVECAVFGGGNGEVIASGVGEILAAADFYDFDAKYYNEESRTVVNPEL 286

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279
           P D  ++V+  A     A+   G++R DF        VF  EIN  PG T +S++P +  
Sbjct: 287 PGDAAEKVREAARRIFTAVDGYGMARVDFFVTEQGEVVFN-EINTIPGFTAISMYPMLFE 345

Query: 280 YAGYSFRELLLWMVEDA 296
            AG    EL+  ++E+ 
Sbjct: 346 AAGVDKTELVTRLIENG 362


>gi|225868922|ref|YP_002744870.1| D-alanine--D-alanine ligase [Streptococcus equi subsp.
           zooepidemicus]
 gi|259645174|sp|C0MCV8|DDL_STRS7 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|225702198|emb|CAW99921.1| D-alanine--D-alanine ligase [Streptococcus equi subsp.
           zooepidemicus]
          Length = 348

 Score =  129 bits (325), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 94/332 (28%), Positives = 167/332 (50%), Gaps = 43/332 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           + +L GG S+EREVS+ S ++   A++   F V    + ++   +               
Sbjct: 6   LILLYGGRSAEREVSVLSAESVMRAVDYTKFFVKTYFISQTGQFIKTQEFSSRPTLTERL 65

Query: 49  -----------LKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
                      ++P        + F VLHG  GEDG +Q  LE+L +PY  + IL+S+++
Sbjct: 66  MTNDTIRLEQQIRPSDIYEEGAVVFPVLHGPMGEDGSIQGFLEVLRMPYVGTNILSSSVA 125

Query: 91  MDKMRSKQVVSSCGVP-VCPSILV-----NRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
           MDK+ +K+V+ S G+P V  ++ +     +R   +++  +S P  +KP   GSS+GI   
Sbjct: 126 MDKITTKRVLESAGIPQVAYTVYIEGQDLDRCLAETEAALSYPVFVKPANMGSSVGISKA 185

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYS 201
           + ++ +   +L + +++   ++LIEQ V   E+  G++G+  +  T   E+ V   DFY 
Sbjct: 186 ESEEELRAAILLALTYD--SRILIEQGVLAREIEVGLLGNTDVKSTLPGEV-VKNVDFYD 242

Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
           Y+ KY     T  +PA I       ++  A  A +AIG  G+SR DF       +++  E
Sbjct: 243 YQAKYIDNEITMAIPATIDESAMTSMRIYAETAFKAIGACGLSRCDFFLGQ-DGQIYLNE 301

Query: 262 INVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +N  PG T  S++P +  + G ++ EL+  +V
Sbjct: 302 LNTMPGFTQWSMYPLLWEHMGLNYAELIEELV 333


>gi|295092630|emb|CBK78737.1| D-alanine--D-alanine ligase [Clostridium cf. saccharolyticum K10]
          Length = 368

 Score =  129 bits (325), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 83/257 (32%), Positives = 130/257 (50%), Gaps = 15/257 (5%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+AF VLHG +GEDG +Q + EL  +PY   G+LASA+SMDK+ +K V  + GV     +
Sbjct: 109 DVAFPVLHGLYGEDGTIQGLFELARLPYVGCGVLASAVSMDKLYTKIVADTLGVRQAAYV 168

Query: 112 LVNR--------FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
            V R         T   +   S P  IKP   GSS G+        +   L +++   H 
Sbjct: 169 PVMRGELSHMESVTERVEKHFSYPVFIKPSNAGSSRGVSKASDRSELENGLREAA--KHD 226

Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK----SDFYSYELKYSSLNSTHVLPAKI 219
            ++L+E+ + G E+ C V G  + +V    V +    +DFY ++ KY +  S  V+  ++
Sbjct: 227 RKILVEEMIVGREVECAVFGGGNGEVIASGVGEILAAADFYDFDAKYYNEESRTVVNPEL 286

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279
           P D  ++V+  A     A+   G++R DF        VF  EIN  PG T +S++P +  
Sbjct: 287 PGDAAEKVREAARRIFTAVDGYGMARVDFFVTEQGEVVFN-EINTIPGFTAISMYPMLFE 345

Query: 280 YAGYSFRELLLWMVEDA 296
            AG    EL+  ++E+ 
Sbjct: 346 AAGVDKTELVTRLIENG 362


>gi|282881101|ref|ZP_06289788.1| D-ala D-ala ligase N-terminal domain protein [Prevotella timonensis
           CRIS 5C-B1]
 gi|281304905|gb|EFA96978.1| D-ala D-ala ligase N-terminal domain protein [Prevotella timonensis
           CRIS 5C-B1]
          Length = 333

 Score =  129 bits (324), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 98/329 (29%), Positives = 159/329 (48%), Gaps = 39/329 (11%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKV-----------------SQIDVDRSVG 43
           +A++ GG SSE +VSL S +   S  +   + V                 S + VDR+  
Sbjct: 8   IAIVCGGDSSEYDVSLRSAQGLYSFFDKERYHVFIVTIRGLDWNVCLEDGSTVKVDRNDF 67

Query: 44  LVLAHLKP---DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
             + + K    D A+  +HG  GE+G++Q   EL++IPY+ SG+L  AL+ +K    + +
Sbjct: 68  SFVHNGKSIIFDYAYITIHGTPGENGIIQGYFELVDIPYSTSGVLVEALTFNKFVLNRYL 127

Query: 101 SSCGVPVCPSILVNR---FTMDSQHL---ISPPYVIKPLKGGSSLGIIVIKK-DQSIPLD 153
           +S GV V  SIL+ R     +  Q +   +  P  +KP+  GSS G+  +K  DQ  P  
Sbjct: 128 ASFGVKVAKSILLRRGEESKLSEQEIEAQLGMPCFVKPVADGSSFGVTKVKNSDQLAPAL 187

Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV----TEIAVPKSDFYSYELKYSSL 209
            +   ++   +  +IE Y+ G+EL+ G    +   V    TE+ V  ++F+ Y+ KY+  
Sbjct: 188 RV---AFMQNEAAMIESYMKGVELSIGCYKTSEKAVVFPATEV-VTSNEFFDYDAKYNG- 242

Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK---VFWLEINVQP 266
               + PA+I  D  K+V       +  + C GI R D++     +    V  LE+N  P
Sbjct: 243 QVQEITPARIADDTAKKVAEETSKIYDILHCNGIIRIDYIITKDEQGNDVVNMLEVNTTP 302

Query: 267 GMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           GMT  S  P+    AG    E+L  +VE+
Sbjct: 303 GMTATSFIPQQVRAAGLDITEVLTEIVEN 331


>gi|284992426|ref|YP_003410980.1| D-alanine/D-alanine ligase [Geodermatophilus obscurus DSM 43160]
 gi|284065671|gb|ADB76609.1| D-alanine/D-alanine ligase [Geodermatophilus obscurus DSM 43160]
          Length = 384

 Score =  129 bits (324), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 91/306 (29%), Positives = 153/306 (50%), Gaps = 25/306 (8%)

Query: 10  SEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ 69
           ++ E+   +G    S + D G +   + ++ + G+  A  + D+ F VLHG +GEDG +Q
Sbjct: 65  ADGELPEVTGGTAVSLVGDPGGRGLAV-LEPAAGVASALTEVDVVFPVLHGAYGEDGTIQ 123

Query: 70  AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP---------VCPSILVNRFTMD- 119
            +LE+  IPY  SG+ ASA SMDK  +K+++++ G+P            ++  +   +D 
Sbjct: 124 GLLEMSGIPYVGSGVFASAASMDKEFTKKLLAAAGLPQGVHVVLRDASGAVSADPGVLDD 183

Query: 120 -SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
             +  +  P  +KP + GSS+GI  +      P  +  ++S +   ++++E  V G E+ 
Sbjct: 184 ADRERLGLPVFVKPCRAGSSIGITKVTDWAQFPEAVATAASVDP--KVIVEAAVPGREVE 241

Query: 179 CGVMG------DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
           CGV+        ASL       P +++Y +  KY        +PA +  +  + VQ  A 
Sbjct: 242 CGVLARPDGPPQASLPAEIRLRPGTEWYDFAAKYLDDAVDFDVPADLTPEQTRLVQETAR 301

Query: 233 LAHQAIGCRGISRSDFLF----DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
            A  A+ CRG++R DF      D   R V   E+N  PG TP+S++P M A  G  F  L
Sbjct: 302 KAFLALDCRGLARVDFFLGTGPDGADRLVV-NEVNTMPGFTPISMYPRMWAATGVDFAAL 360

Query: 289 LLWMVE 294
           +  +VE
Sbjct: 361 VDRLVE 366


>gi|262283026|ref|ZP_06060793.1| D-alanyl-alanine synthetase A [Streptococcus sp. 2_1_36FAA]
 gi|262261278|gb|EEY79977.1| D-alanyl-alanine synthetase A [Streptococcus sp. 2_1_36FAA]
          Length = 348

 Score =  129 bits (324), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 99/340 (29%), Positives = 165/340 (48%), Gaps = 46/340 (13%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKV----------------------------- 33
           +L GG S+EREVS+ S ++   A+    F V                             
Sbjct: 8   LLYGGRSAEREVSVLSAESVMRAINYDLFSVKTYFITKEGYFIKTQEFEAKPVADEKLMT 67

Query: 34  -SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
            + +D+ R +     +    + F VLHG  GEDG +Q  LE+L++PY    IL+S+L+MD
Sbjct: 68  NATVDMSRKIKPSDIYEAGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNILSSSLAMD 127

Query: 93  KMRSKQVVSSCGVPVCPSILV------NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           K+ +K+V+ S G+   P + V       +   + +  +S P   KP   GSS+GI   K 
Sbjct: 128 KITTKRVLESAGIAQVPYVAVVDGEDLEQKIQEIEEKLSYPVFTKPSNMGSSVGI--SKS 185

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYE 203
           D    L +    ++ +  ++L+EQ V   E+  G++G+A +  +   E+ V    FY Y+
Sbjct: 186 DNQEELRVSLELAFKYDSRVLVEQGVTAREIEVGLLGNADVKSSLPGEV-VKDVAFYDYQ 244

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            KY     T  +PA++P  +   +++ A  A +AIG  G+SR DF +     +VF  E+N
Sbjct: 245 AKYIDNKITMAIPAQLPEGVVNTMRQNAETAFRAIGGLGLSRCDFFYTE-DGQVFLNELN 303

Query: 264 VQPGMTPVSIFPEMAAYAGYSFREL---LLWMVEDASCLR 300
             PG T  S++P +    G ++ +L   L+ + E+A   R
Sbjct: 304 TMPGFTQWSMYPLLWENMGLAYPDLIEKLVRLAEEAFAKR 343


>gi|300769676|ref|ZP_07079559.1| D-alanine--D-alanine ligase [Lactobacillus plantarum subsp.
           plantarum ATCC 14917]
 gi|300492719|gb|EFK27904.1| D-alanine--D-alanine ligase [Lactobacillus plantarum subsp.
           plantarum ATCC 14917]
          Length = 374

 Score =  129 bits (324), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 83/255 (32%), Positives = 147/255 (57%), Gaps = 15/255 (5%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+ + V+HGN GEDG +Q + +LL+ PY  SG+LASA S DK  +KQ+++   +     +
Sbjct: 101 DIFYPVVHGNLGEDGTLQGLFKLLKKPYVGSGVLASAASFDKDITKQILTHHHIQNTKYV 160

Query: 112 LV---NRFTMDSQHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
           +V   NR  M   +L   +     IKP   GSS+GI   + +Q   LD L + ++ +  +
Sbjct: 161 VVTPENRDQMTYAYLQAHVGDHLFIKPANQGSSIGIHKAENEQEY-LDGL-ADAFKYDYK 218

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTE---IAVPKSD-FYSYELKYSSLNS-THVLPAKI 219
           +L+E+ +D   E+ C ++G+ +   ++   I VPK+D FY Y  K+   +  T  LP ++
Sbjct: 219 ILVEESIDNPREVECSILGNENPKASKLGAIDVPKTDTFYDYNNKFVDASGVTFELPVEL 278

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279
           P D+ K +Q+++  A +A+G +G++R DFL      + +  EIN  PG T +S++P++  
Sbjct: 279 PADLTKRIQQMSLDAFKALGLKGMARVDFLVSE-DGEPYLGEINTLPGFTNISLYPKLWE 337

Query: 280 YAGYSFRELLLWMVE 294
            +G S+  L+  +++
Sbjct: 338 VSGISYTALIDQLIQ 352


>gi|148984109|ref|ZP_01817404.1| D-alanylalanine synthetase [Streptococcus pneumoniae SP3-BS71]
 gi|147923398|gb|EDK74511.1| D-alanylalanine synthetase [Streptococcus pneumoniae SP3-BS71]
 gi|301800482|emb|CBW33121.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae OXC141]
          Length = 347

 Score =  129 bits (324), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 99/331 (29%), Positives = 161/331 (48%), Gaps = 43/331 (12%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQ--------------------------- 35
           +L GG S+EREVS+ S ++   A+    F V                             
Sbjct: 7   LLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDFIKTQEFSHAPGQEDRLMT 66

Query: 36  ---IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
              ID D+ V     + +  + F VLHG  GEDG VQ  LE+L++PY    IL+S+L+MD
Sbjct: 67  NETIDWDKKVAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLAMD 126

Query: 93  KMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           K+ +K+V+ S G+   P +       V     + +  ++ P   KP   GSS+GI   + 
Sbjct: 127 KITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLAYPVFTKPSNMGSSVGISRSEN 186

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYE 203
            + +   L    ++ +  ++L+EQ V+  E+  G++G+  +  T   E+ V    FY Y+
Sbjct: 187 QEELRQAL--KLAFRYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVAFYDYD 243

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            KY     T  +PAKI  D+   +++ A  A +AIG  G+SR DF +     ++F  E+N
Sbjct: 244 AKYIDNKVTMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDFFYTDKG-EIFLNELN 302

Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             PG T  S++P +    G S+ EL+  +V+
Sbjct: 303 TMPGFTQWSMYPLLWDNMGISYPELIERLVD 333


>gi|307707461|ref|ZP_07643943.1| D-alanine--D-alanine ligase [Streptococcus mitis NCTC 12261]
 gi|307616413|gb|EFN95604.1| D-alanine--D-alanine ligase [Streptococcus mitis NCTC 12261]
          Length = 347

 Score =  129 bits (324), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 99/331 (29%), Positives = 160/331 (48%), Gaps = 43/331 (12%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKV----------------------------- 33
           +L GG S+EREVS+ S ++   A+    F V                             
Sbjct: 7   LLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDFIKTQEFNQTPGQEDRLMT 66

Query: 34  -SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
              ID D+ V     + +  + F VLHG  GEDG VQ  LE+L++PY    IL+S+L+MD
Sbjct: 67  NETIDWDKKVAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLAMD 126

Query: 93  KMRSKQVVSSCGVPVCPSILV------NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           K+ +K+V+ S G+   P + +           + +  ++ P   KP   GSS+GI   K 
Sbjct: 127 KITTKRVLESVGIAQVPYVAIVEGDDMTAKIAEVEEKLTYPVFTKPSNMGSSVGI--SKS 184

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYE 203
           +    L      ++ +  ++L+EQ V+  E+  G++G+  +  T   E+ V    FY Y+
Sbjct: 185 ENQEELRQALKLAFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVAFYDYD 243

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            KY     T  +PAKI  D+   +++ A  A +AIG  G+SR DF +     ++F  E+N
Sbjct: 244 AKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDFFYTDKG-EIFLNELN 302

Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             PG T  S++P +    G S+ EL+  +V+
Sbjct: 303 TMPGFTQWSMYPLLWDNMGISYPELIERLVD 333


>gi|317455526|pdb|3Q1K|A Chain A, The Crystal Structure Of The D-Alanyl-Alanine Synthetase A
           From Salmonella Enterica Typhimurium Complexed With Adp
 gi|317455527|pdb|3Q1K|B Chain B, The Crystal Structure Of The D-Alanyl-Alanine Synthetase A
           From Salmonella Enterica Typhimurium Complexed With Adp
 gi|317455528|pdb|3Q1K|C Chain C, The Crystal Structure Of The D-Alanyl-Alanine Synthetase A
           From Salmonella Enterica Typhimurium Complexed With Adp
 gi|317455529|pdb|3Q1K|D Chain D, The Crystal Structure Of The D-Alanyl-Alanine Synthetase A
           From Salmonella Enterica Typhimurium Complexed With Adp
          Length = 367

 Score =  129 bits (324), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 89/346 (25%), Positives = 164/346 (47%), Gaps = 55/346 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD--------------------- 39
           + ++ GG S+E EVSL S K    A++   F V  + +D                     
Sbjct: 9   VGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGIDKAGQWHVNDAENYLQNADDPA 68

Query: 40  ----RSVGLVLAHL--------------KP----DLAFNVLHGNFGEDGLVQAILELLEI 77
               R   + LA +              +P    D+ F ++HG  GEDG +Q  L +  +
Sbjct: 69  HIALRPSAISLAQVPGKHQHQLINAQNGQPLPTVDVIFPIVHGTLGEDGSLQGXLRVANL 128

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVIK 131
           P+  S +L+SA   DK  +K+++   G+ + P I + R    +      +  +  P  +K
Sbjct: 129 PFVGSDVLSSAACXDKDVAKRLLRDAGLNIAPFITLTRTNRHAFSFAEVESRLGLPLFVK 188

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  +  +      +  +  ++H  ++++EQ + G E+ C V+G+ +   + 
Sbjct: 189 PANQGSSVGVSKVANEAQYQQAVALAFEFDH--KVVVEQGIKGREIECAVLGNDNPQAST 246

Query: 192 IA--VPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               V  S+FY+Y+ KY   N    V+PA+IP ++  +++ +A  A+Q +GC G +R D 
Sbjct: 247 CGEIVLNSEFYAYDTKYIDDNGAQVVVPAQIPSEVNDKIRAIAIQAYQTLGCAGXARVD- 305

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           +F     +V   EIN  PG T +S +P++   +G  + +L+  ++E
Sbjct: 306 VFLTADNEVVINEINTLPGFTNISXYPKLWQASGLGYTDLISRLIE 351


>gi|302384965|ref|YP_003820787.1| D-alanine/D-alanine ligase [Clostridium saccharolyticum WM1]
 gi|302195593|gb|ADL03164.1| D-alanine/D-alanine ligase [Clostridium saccharolyticum WM1]
          Length = 354

 Score =  129 bits (324), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 87/261 (33%), Positives = 135/261 (51%), Gaps = 17/261 (6%)

Query: 49  LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
           LK D+ F VLHG  GEDG VQ +LEL  IPY   G+L+SA+SMDK+ +K +V   GV   
Sbjct: 92  LKADVVFPVLHGLLGEDGTVQGLLELARIPYVGCGVLSSAVSMDKLYTKIIVDDLGVTQA 151

Query: 109 PSILVNRFTMDSQHLI--------SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160
             + V R  +    L+        S P  +KP   GSS G+   +  + +   L +++  
Sbjct: 152 AYVPVMRHDLKDMDLVVGKVEERFSYPVFVKPSNAGSSKGVSRAEDRKELMEALTEAAV- 210

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASL-----DVTEIAVPKSDFYSYELKYSSLNSTHVL 215
            H  ++L+E+ + G E+ C V G  +L      V EI +  ++FY ++ KY + +S  V+
Sbjct: 211 -HDRKILVEEMIVGREIECAVFGGGNLPAEASGVGEI-LAAAEFYDFDAKYYNSDSRTVV 268

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275
              +P    + V+  A    QA+   G++R DF        VF  EIN  PG T +S++P
Sbjct: 269 DPVLPEGAAERVKEAAKAIFQAVDGYGLARVDFFVKEDGSVVF-NEINTMPGFTAISMYP 327

Query: 276 EMAAYAGYSFRELLLWMVEDA 296
            +   AG +  EL+  ++E A
Sbjct: 328 MLWEAAGMNKDELVGRLMEHA 348


>gi|259047321|ref|ZP_05737722.1| D-alanine--D-alanine ligase [Granulicatella adiacens ATCC 49175]
 gi|259036017|gb|EEW37272.1| D-alanine--D-alanine ligase [Granulicatella adiacens ATCC 49175]
          Length = 357

 Score =  129 bits (324), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 75/259 (28%), Positives = 138/259 (53%), Gaps = 23/259 (8%)

Query: 51  PD-LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109
           PD + F +LHG  GEDG +Q + E+L++PY   G+LASA  MDK+ SK +    G+P  P
Sbjct: 93  PDTVVFPILHGPNGEDGTIQGLFEILDLPYVGCGVLASANGMDKIASKHLFQQAGIPQVP 152

Query: 110 SI-------------LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
            +             + NR     +  +  P  +KP   GSS+GI      + +   + +
Sbjct: 153 FVPFVKADFKKSPEAIYNRI----EGTLRYPVFVKPANMGSSVGISKATNREELTAAIEE 208

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA--VPKSDFYSYELKYSSLNSTHV 214
           +  ++   ++++EQ +D  E+   V+G+  ++ + +   V ++ FY Y  KY +  +T  
Sbjct: 209 ALKYDR--RIVVEQGIDAREVEVAVLGNDEVNTSVVGEVVKQAGFYDYNEKYINNTTTLQ 266

Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274
           +PA IP ++  +++  A  A +AI   G++R DF     +++VF  E+N  PG T  S++
Sbjct: 267 IPAAIPEEVSAKIREYAETAFRAIDGSGLTRCDFFLTE-TQEVFINEVNTMPGFTQFSMY 325

Query: 275 PEMAAYAGYSFRELLLWMV 293
           P++    G S+++L+  ++
Sbjct: 326 PKLWEAMGISYKDLVEELI 344


>gi|225857287|ref|YP_002738798.1| D-alanyl-alanine synthetase A [Streptococcus pneumoniae P1031]
 gi|254767743|sp|C1CM10|DDL_STRZP RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|225724581|gb|ACO20433.1| D-alanine--D-alanine ligase (D-alanylalanine
           synthetase)(D-Ala-D-Ala ligase) [Streptococcus
           pneumoniae P1031]
          Length = 347

 Score =  129 bits (324), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 100/331 (30%), Positives = 160/331 (48%), Gaps = 43/331 (12%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQ--------------------------- 35
           +L GG S+EREVS+ S ++   A+    F V                             
Sbjct: 7   LLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDFIKTQEFSHAPGQEDRLMT 66

Query: 36  ---IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
              ID D+ V     + +  + F VLHG  GEDG VQ  LE+L++PY    IL+S+L+MD
Sbjct: 67  NETIDWDKKVAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLAMD 126

Query: 93  KMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           K+ +K+V+ S G+   P +       V     + +  ++ P   KP   GSS+GI   K 
Sbjct: 127 KITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLAYPVFAKPSNMGSSVGI--SKS 184

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYE 203
           +    L      ++ +  ++L+EQ V+  E+  G++G+  +  T   E+ V    FY Y+
Sbjct: 185 ENQEELRQALKLAFRYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVAFYDYD 243

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            KY     T  +PAKI  D+   +++ A  A +AIG  G+SR DF +     ++F  E+N
Sbjct: 244 AKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDFFYTDKG-EIFLNELN 302

Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             PG T  S++P +    G S+ EL+  +V+
Sbjct: 303 TMPGFTQWSMYPLLWDNMGISYPELIERLVD 333


>gi|323339467|ref|ZP_08079746.1| D-alanine-D-alanine ligase A [Lactobacillus ruminis ATCC 25644]
 gi|323093081|gb|EFZ35674.1| D-alanine-D-alanine ligase A [Lactobacillus ruminis ATCC 25644]
          Length = 382

 Score =  129 bits (324), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 98/343 (28%), Positives = 171/343 (49%), Gaps = 52/343 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI------------------------ 36
           +A+L GG SSE +VS  S      AL+   ++VS                          
Sbjct: 8   IALLFGGNSSEHDVSKRSAHTVFDALDKDKYEVSVFMFTKQGFLLGNKDSMRIFDGEPED 67

Query: 37  --------DVDRSVGLV----LAHLKP-DLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                   DVD S  L     L+ +K  DL   V+HGN GEDG VQ++  LL  PY  SG
Sbjct: 68  AVVAEAIKDVDFSNPLANIQSLSEVKDIDLFIPVIHGNMGEDGTVQSLFRLLNKPYIGSG 127

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILV-----NRFTMDS-QHLISPPYVIKPLKGGS 137
           I +SA+S DK  +KQ+++  G+     ++V     + +T +     +     +KP + GS
Sbjct: 128 IASSAVSFDKDLTKQLLTYHGIRNTKYVVVTPENQSEYTYEKCAAELGETLFVKPARQGS 187

Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTE---IA 193
           S+GI  +   +    D      +++  ++L+E+ + +  E+ C V+G+  +  ++   I 
Sbjct: 188 SVGIYKVSNKEE--FDKAIQDGFHYDFKILVEETIANPREVECSVLGNRDIKASKLGAIR 245

Query: 194 VPKSD-FYSYELKYSSLNS-THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
           VP  D FY Y  K+   +     +P ++P ++ KE+Q+++  A + +G RG++R DFL D
Sbjct: 246 VPAEDAFYDYNNKFVDASGVVFEIPVELPENLTKEIQQMSLDAFRVLGNRGLARMDFLVD 305

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
                 F  E+N  PG T +S++P++ A +G ++++LL  +++
Sbjct: 306 ENDVPYFG-EVNTLPGFTNISLYPQLWAVSGINYKDLLDRLIQ 347


>gi|315225622|ref|ZP_07867431.1| D-alanine-D-alanine ligase [Capnocytophaga ochracea F0287]
 gi|314944439|gb|EFS96479.1| D-alanine-D-alanine ligase [Capnocytophaga ochracea F0287]
          Length = 325

 Score =  129 bits (324), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 92/322 (28%), Positives = 156/322 (48%), Gaps = 34/322 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------------------- 40
           +A++MGG S+E  VSL S    A  L    +    + +DR                    
Sbjct: 5   IAIIMGGYSNEAPVSLKSATVVAKHLNQDKYVPYPVRIDRDKWVYVDAQNNEHPIDKNDF 64

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           SV +    +  D  FN +HG  GEDG +QA   L+ +P T   + ASAL+ +K     V+
Sbjct: 65  SVTVNGCKITFDAVFNAIHGTPGEDGYLQAYFNLIGLPLTGCSMYASALTFNKRDMLSVL 124

Query: 101 SSCGVPVCPSILVNR----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
              G+   PS  +N+     T D    +  P  +K  K GSS G+  + ++  +P+ +  
Sbjct: 125 KPFGILSAPSYYLNKGEDYNTADIVAKVGLPCFVKANKSGSSFGVYKVYEEVQLPMYI-- 182

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDAS----LDVTEIAVPKSDFYSYELKYSSLNST 212
             ++   D++LIE ++ G E++ GV+        L +TEI V ++DF+ Y+ KY+   S 
Sbjct: 183 DKAFEVDDEILIESFLKGTEISIGVINYRGKIKVLPMTEI-VSENDFFDYDAKYNG-KSQ 240

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
            + PA++  ++  ++  LA   ++ +   G SRS+F+   +    + LE+N  PG++  S
Sbjct: 241 EITPARLSAEMTAKINALAERVYRLLKMEGFSRSEFII--VDDTPYLLEMNTTPGLSEAS 298

Query: 273 IFPEMAAYAGYSFRELLLWMVE 294
           + P+ A  AG S  EL    +E
Sbjct: 299 LLPQQAKVAGISLEELFESEIE 320


>gi|69248310|ref|ZP_00604712.1| D-alanine--D-alanine ligase [Enterococcus faecium DO]
 gi|257878840|ref|ZP_05658493.1| D-alanine:D-alanine ligase [Enterococcus faecium 1,230,933]
 gi|257881476|ref|ZP_05661129.1| D-alanine:D-alanine ligase [Enterococcus faecium 1,231,502]
 gi|257890698|ref|ZP_05670351.1| D-alanine:D-alanine ligase [Enterococcus faecium 1,231,410]
 gi|257899460|ref|ZP_05679113.1| D-alanine:D-alanine ligase [Enterococcus faecium Com15]
 gi|258615090|ref|ZP_05712860.1| D-alanine--D-alanine ligase [Enterococcus faecium DO]
 gi|261207111|ref|ZP_05921800.1| D-alanine-D-alanine ligase [Enterococcus faecium TC 6]
 gi|289567230|ref|ZP_06447615.1| D-alanine-D-alanine ligase [Enterococcus faecium D344SRF]
 gi|293560259|ref|ZP_06676756.1| D-alanine--D-alanine ligase [Enterococcus faecium E1162]
 gi|293567809|ref|ZP_06679150.1| D-alanine--D-alanine ligase [Enterococcus faecium E1071]
 gi|293573032|ref|ZP_06683974.1| D-alanine--D-alanine ligase [Enterococcus faecium E980]
 gi|294615130|ref|ZP_06695016.1| D-alanine--D-alanine ligase [Enterococcus faecium E1636]
 gi|294621793|ref|ZP_06700952.1| D-alanine--D-alanine ligase [Enterococcus faecium U0317]
 gi|314938930|ref|ZP_07846195.1| D-ala D-ala ligase [Enterococcus faecium TX0133a04]
 gi|314943519|ref|ZP_07850286.1| D-ala D-ala ligase [Enterococcus faecium TX0133C]
 gi|314948186|ref|ZP_07851580.1| D-ala D-ala ligase [Enterococcus faecium TX0082]
 gi|314951546|ref|ZP_07854592.1| D-ala D-ala ligase [Enterococcus faecium TX0133A]
 gi|314991591|ref|ZP_07857067.1| D-ala D-ala ligase [Enterococcus faecium TX0133B]
 gi|314994924|ref|ZP_07860051.1| D-ala D-ala ligase [Enterococcus faecium TX0133a01]
 gi|13346887|gb|AAB17902.2| D-alanine:D-alanine ligase [Enterococcus faecium]
 gi|33336048|gb|AAQ12892.1| D-alanine:D-alanine ligase [Enterococcus faecium]
 gi|68194454|gb|EAN08955.1| D-alanine--D-alanine ligase [Enterococcus faecium DO]
 gi|257813068|gb|EEV41826.1| D-alanine:D-alanine ligase [Enterococcus faecium 1,230,933]
 gi|257817134|gb|EEV44462.1| D-alanine:D-alanine ligase [Enterococcus faecium 1,231,502]
 gi|257827058|gb|EEV53684.1| D-alanine:D-alanine ligase [Enterococcus faecium 1,231,410]
 gi|257837372|gb|EEV62446.1| D-alanine:D-alanine ligase [Enterococcus faecium Com15]
 gi|260078739|gb|EEW66441.1| D-alanine-D-alanine ligase [Enterococcus faecium TC 6]
 gi|289160978|gb|EFD08893.1| D-alanine-D-alanine ligase [Enterococcus faecium D344SRF]
 gi|291589394|gb|EFF21201.1| D-alanine--D-alanine ligase [Enterococcus faecium E1071]
 gi|291592072|gb|EFF23695.1| D-alanine--D-alanine ligase [Enterococcus faecium E1636]
 gi|291598625|gb|EFF29683.1| D-alanine--D-alanine ligase [Enterococcus faecium U0317]
 gi|291605709|gb|EFF35146.1| D-alanine--D-alanine ligase [Enterococcus faecium E1162]
 gi|291606934|gb|EFF36314.1| D-alanine--D-alanine ligase [Enterococcus faecium E980]
 gi|313590906|gb|EFR69751.1| D-ala D-ala ligase [Enterococcus faecium TX0133a01]
 gi|313593875|gb|EFR72720.1| D-ala D-ala ligase [Enterococcus faecium TX0133B]
 gi|313596240|gb|EFR75085.1| D-ala D-ala ligase [Enterococcus faecium TX0133A]
 gi|313597891|gb|EFR76736.1| D-ala D-ala ligase [Enterococcus faecium TX0133C]
 gi|313641639|gb|EFS06219.1| D-ala D-ala ligase [Enterococcus faecium TX0133a04]
 gi|313645319|gb|EFS09899.1| D-ala D-ala ligase [Enterococcus faecium TX0082]
          Length = 358

 Score =  129 bits (324), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 77/254 (30%), Positives = 137/254 (53%), Gaps = 16/254 (6%)

Query: 53  LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--S 110
           + F VLHG  GEDG +Q  LE L +PY  +G+L SA +MDK+ +K ++ + GVP  P   
Sbjct: 92  IVFPVLHGPNGEDGTIQGFLETLNMPYVGAGVLTSACAMDKIMTKYILQAAGVPQVPYVP 151

Query: 111 ILVNRFTMDSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
           +L N++  + + +          P  +KP   GSS+GI   +  + +   L  ++++ + 
Sbjct: 152 VLKNQWKENPKKVFDQCEGSLLYPMFVKPANMGSSVGITKAENREELQNAL--ATAYQYD 209

Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
            + ++EQ ++  E+   V+G+  +  T   E+ V    FY YE KY +      +PA++P
Sbjct: 210 SRAIVEQGIEAREIEVAVLGNEDVRTTLPGEV-VKDVAFYDYEAKYINNKIEMQIPAEVP 268

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280
            ++Y++ Q  A LA+  +G  G+SR DF F     ++F  E+N  PG T  S++P +   
Sbjct: 269 EEVYQKAQEYAKLAYTMLGGSGLSRCDF-FLTNKNELFLNELNSMPGFTEFSMYPLLWEN 327

Query: 281 AGYSFRELLLWMVE 294
            G  + +L+  +++
Sbjct: 328 MGLKYGDLIEELIQ 341


>gi|297172847|gb|ADI23810.1| D-alanine-D-alanine ligase and related ATP-grasp enzymes
           [uncultured gamma proteobacterium HF4000_47G05]
          Length = 345

 Score =  129 bits (324), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 83/256 (32%), Positives = 138/256 (53%), Gaps = 17/256 (6%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+ F +LHG +GEDG VQ +LEL  + Y  +G+ ASAL MDK  ++ + ++ G+P     
Sbjct: 77  DVVFPLLHGPYGEDGTVQGLLELAGLAYVGAGVAASALGMDKALARAIFAASGLPQTQYT 136

Query: 112 LVNRFTMDSQHL---------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
           ++ R       +            P  +KP   GSS+GI  +   Q + + L  +S ++ 
Sbjct: 137 VIMRSDWCRAQVPVLERLEGEYDYPLFVKPANLGSSVGISKVHDRQGLQVGLELASRYDT 196

Query: 163 GDQLLIEQYVDGI-ELTCGVMGDA---SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
             +L++E+ V+   EL C V+G+    +  V EI +P ++FY Y  KY    S  V+PA 
Sbjct: 197 --KLIVERSVENARELECAVLGNEFPQASGVGEI-IPGAEFYDYTTKYIDDRSELVIPAV 253

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278
           +     + +Q+LA    +AI C G++R DF F      V   EIN  PG TP+S++P++ 
Sbjct: 254 LEKSKTETIQQLAIQTFKAIDCSGLARVDF-FMCSDGSVLVNEINTMPGFTPISMYPKLW 312

Query: 279 AYAGYSFRELLLWMVE 294
           A AG ++ +L+  +++
Sbjct: 313 AAAGIAYGDLIDRLIQ 328


>gi|12231521|gb|AAG49141.1|AF215736_1 D-alanine:D-alanine ligase [Enterococcus faecium]
          Length = 358

 Score =  129 bits (324), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 78/254 (30%), Positives = 136/254 (53%), Gaps = 16/254 (6%)

Query: 53  LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--S 110
           + F VLHG  GEDG +Q  LE L +PY  +G+L SA +MDK+ +K ++ + GVP  P   
Sbjct: 92  IVFPVLHGPNGEDGTIQGFLETLNMPYVGAGVLTSACAMDKIMTKYILQAAGVPQVPYVP 151

Query: 111 ILVNRFTMDSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
           +L N++  + + +          P  +KP   GSS+GI   K +    L    ++++ + 
Sbjct: 152 VLKNQWKENPKKVFDQCEGSLLYPMFVKPANMGSSVGI--TKAENREELQNALATAYQYD 209

Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
            + ++EQ ++  E+   V+G+  +  T   E+ V    FY YE KY +      +PA++P
Sbjct: 210 SRAIVEQGIEAREIEVAVLGNEDVRTTLPGEV-VKDVAFYDYEAKYINNKIEMQIPAEVP 268

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280
            ++Y++ Q  A LA+  +G  G+SR DF F     ++F  E+N  PG T  S++P +   
Sbjct: 269 EEVYQKAQEYAKLAYTMLGGSGLSRCDF-FLTNKNELFLNELNSMPGFTEFSMYPLLWEN 327

Query: 281 AGYSFRELLLWMVE 294
            G  + +L+  +++
Sbjct: 328 MGLKYGDLIEELIQ 341


>gi|295698674|ref|YP_003603329.1| D-alanine--D-alanine ligase B [Candidatus Riesia pediculicola USDA]
 gi|291157176|gb|ADD79621.1| D-alanine--D-alanine ligase B [Candidatus Riesia pediculicola USDA]
          Length = 308

 Score =  129 bits (324), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 95/303 (31%), Positives = 155/303 (51%), Gaps = 21/303 (6%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL-VLAHLKPDLAFNVLH 59
           +A+L GG SSER +SL SGK  A++L+D G +   ID      +  +A ++ D  F  LH
Sbjct: 8   VAILYGGNSSERTISLKSGKNIANSLKDLGIQSDLIDTKYQFSIDRIASVRYDKIFIALH 67

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--FT 117
           G  GEDG +Q IL+  ++ YT +G  +S +   K+ +K++  S  +P  P   +N+  F 
Sbjct: 68  GKNGEDGTIQRILDKFKMNYTGNGFYSSFIGTHKILTKKIWFSLKLPTAPFFYINKKSFF 127

Query: 118 MDSQHLISP-------PYVIKPLKGGSSLGI---IVIKKDQSIPLDLLQSSSWNHGDQLL 167
           M  +  IS        P +IKP   GSS+G+     +K+ + I ++     S+ +   ++
Sbjct: 128 MQPRSAISSVFKKIGFPLIIKPDSEGSSIGVRKAFSLKEAERILVE-----SFKYDRYII 182

Query: 168 IEQYVDGIELTCGVMGDAS-LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE 226
           IE+Y+ G E T  ++     L   +I +   + +SY  KY      ++ P          
Sbjct: 183 IEKYIIGPEYTVSILNPYYILPSIKIDLYGDEIFSYGNKYDKF-VEYICPGGSSQSKEIL 241

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           ++++A  A++AIGC G+SR D L        + LEIN  PGMT  S+    A  +G SF 
Sbjct: 242 IKKIALAAYKAIGCFGLSRVD-LKQNYDGNFYLLEINTVPGMTDRSLVKIAAEQSGMSFS 300

Query: 287 ELL 289
           +L+
Sbjct: 301 KLV 303


>gi|227550860|ref|ZP_03980909.1| D-alanine--D-alanine ligase [Enterococcus faecium TX1330]
 gi|257887888|ref|ZP_05667541.1| D-alanine:D-alanine ligase [Enterococcus faecium 1,141,733]
 gi|257893313|ref|ZP_05672966.1| D-alanine:D-alanine ligase [Enterococcus faecium 1,231,408]
 gi|257896494|ref|ZP_05676147.1| D-alanine:D-alanine ligase [Enterococcus faecium Com12]
 gi|293379273|ref|ZP_06625419.1| D-ala D-ala ligase N-terminal domain protein [Enterococcus faecium
           PC4.1]
 gi|227179958|gb|EEI60930.1| D-alanine--D-alanine ligase [Enterococcus faecium TX1330]
 gi|257823942|gb|EEV50874.1| D-alanine:D-alanine ligase [Enterococcus faecium 1,141,733]
 gi|257829692|gb|EEV56299.1| D-alanine:D-alanine ligase [Enterococcus faecium 1,231,408]
 gi|257833059|gb|EEV59480.1| D-alanine:D-alanine ligase [Enterococcus faecium Com12]
 gi|292642069|gb|EFF60233.1| D-ala D-ala ligase N-terminal domain protein [Enterococcus faecium
           PC4.1]
          Length = 358

 Score =  129 bits (324), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 78/254 (30%), Positives = 136/254 (53%), Gaps = 16/254 (6%)

Query: 53  LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--S 110
           + F VLHG  GEDG +Q  LE L +PY  +G+L SA +MDK+ +K ++ + GVP  P   
Sbjct: 92  IVFPVLHGPNGEDGTIQGFLETLNMPYVGAGVLTSACAMDKIMTKYILQAAGVPQVPYVP 151

Query: 111 ILVNRFTMDSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
           +L N++  + + +          P  +KP   GSS+GI   K +    L    ++++ + 
Sbjct: 152 VLKNQWKENPKKVFDQCEGSLLYPMFVKPANMGSSVGI--TKAENREELQNALATAYQYD 209

Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
            + ++EQ ++  E+   V+G+  +  T   E+ V    FY YE KY +      +PA++P
Sbjct: 210 SRAIVEQGIEAREIEVAVLGNEDVRTTLPGEV-VKDVAFYDYEAKYINNKIEMQIPAEVP 268

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280
            ++Y++ Q  A LA+  +G  G+SR DF F     ++F  E+N  PG T  S++P +   
Sbjct: 269 EEVYQKAQEYAKLAYTMLGGSGLSRCDF-FLTNKNELFLNELNSMPGFTEFSMYPLLWEN 327

Query: 281 AGYSFRELLLWMVE 294
            G  + +L+  +++
Sbjct: 328 MGLKYGDLIEELIQ 341


>gi|218265032|ref|ZP_03478644.1| hypothetical protein PRABACTJOHN_04354 [Parabacteroides johnsonii
           DSM 18315]
 gi|218221637|gb|EEC94287.1| hypothetical protein PRABACTJOHN_04354 [Parabacteroides johnsonii
           DSM 18315]
          Length = 326

 Score =  129 bits (324), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 88/323 (27%), Positives = 161/323 (49%), Gaps = 33/323 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR---SVGLVLAHLKP------ 51
           +A++ GG SSE  +SL S +   S L+   + V    + R   +V L      P      
Sbjct: 6   IAIVAGGDSSEIVISLKSAEGIFSFLDKDKYNVYIAIIKRDEWAVKLPGGEHTPIDKNDF 65

Query: 52  -----------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
                      D A+  +HG  GEDG +Q   +++ +PY+  G+  SAL+ +K      +
Sbjct: 66  SFRENGEVRHFDFAYITIHGTPGEDGRLQGYFDMIGMPYSSCGMFVSALTFNKFACNHYL 125

Query: 101 SSCGVPVCPSI-LVNRFTMDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
              GV +  SI L    T+  + ++S    P  +KP  GGSS G+  +K+  +I   +  
Sbjct: 126 KGFGVDIACSIHLFKGQTVTDEEVVSRLGLPVFVKPNDGGSSFGVTKVKEASAIQPAI-- 183

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV----TEIAVPKSDFYSYELKYSSLNST 212
           + +++ G +++IE ++DG E+TCG    A  +V    TE+ V  ++F+ ++ KY+     
Sbjct: 184 AKAFSEGREVVIESFIDGTEVTCGCYKTADKEVVFPLTEV-VTDNEFFDFDAKYNG-QVQ 241

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
            + PA++  ++ ++VQR     +  +G +G+ R D++  P   +   LE+N  PGMT  S
Sbjct: 242 EITPARVSAELTEKVQRETSRIYDILGAKGLIRVDYII-PAGGEPKLLEVNTTPGMTATS 300

Query: 273 IFPEMAAYAGYSFRELLLWMVED 295
             P+    AG   ++++  ++E+
Sbjct: 301 FIPQQVRAAGLEMKDVMTDIIEN 323


>gi|257885748|ref|ZP_05665401.1| D-alanine:D-alanine ligase [Enterococcus faecium 1,231,501]
 gi|260558405|ref|ZP_05830601.1| D-alanine-D-alanine ligase [Enterococcus faecium C68]
 gi|293556889|ref|ZP_06675450.1| D-alanine--D-alanine ligase [Enterococcus faecium E1039]
 gi|257821604|gb|EEV48734.1| D-alanine:D-alanine ligase [Enterococcus faecium 1,231,501]
 gi|260075579|gb|EEW63885.1| D-alanine-D-alanine ligase [Enterococcus faecium C68]
 gi|291600973|gb|EFF31264.1| D-alanine--D-alanine ligase [Enterococcus faecium E1039]
          Length = 358

 Score =  129 bits (324), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 77/254 (30%), Positives = 137/254 (53%), Gaps = 16/254 (6%)

Query: 53  LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--S 110
           + F VLHG  GEDG +Q  LE L +PY  +G+L SA +MDK+ +K ++ + GVP  P   
Sbjct: 92  IVFPVLHGPNGEDGTIQGFLETLNMPYVGAGVLTSACAMDKIMTKYILQAAGVPQVPYVP 151

Query: 111 ILVNRFTMDSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
           +L N++  + + +          P  +KP   GSS+GI   +  + +   L  ++++ + 
Sbjct: 152 VLKNQWKENPKKVFDQCEGSLLYPMFVKPANMGSSVGITKAENREELQNAL--ATAYQYD 209

Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
            + ++EQ ++  E+   V+G+  +  T   E+ V    FY YE KY +      +PA++P
Sbjct: 210 SRAIVEQGIEAREIEVAVLGNEDVRTTLPGEV-VKDVAFYDYEAKYINNKIEMQIPAEVP 268

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280
            ++Y++ Q  A LA+  +G  G+SR DF F     ++F  E+N  PG T  S++P +   
Sbjct: 269 EEVYQKAQEYAKLAYTMLGGSGLSRCDF-FLTNKNELFLNELNSMPGFTEFSMYPLLWEN 327

Query: 281 AGYSFRELLLWMVE 294
            G  + +L+  +++
Sbjct: 328 MGLKYGDLIEELIQ 341


>gi|169832697|ref|YP_001695052.1| D-alanyl-alanine synthetase A [Streptococcus pneumoniae
           Hungary19A-6]
 gi|229486021|sp|B1I733|DDL_STRPI RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|168995199|gb|ACA35811.1| D-alanine--D-alanine ligase (D-alanylalanine
           synthetase)(D-Ala-D-Ala ligase) [Streptococcus
           pneumoniae Hungary19A-6]
          Length = 347

 Score =  129 bits (324), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 99/331 (29%), Positives = 160/331 (48%), Gaps = 43/331 (12%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKV----------------------------- 33
           +L GG S+EREVS+ S ++   A+    F V                             
Sbjct: 7   LLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDFIKTQEFSQTPGQEDRLMT 66

Query: 34  -SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
              ID D+ V     + +  + F VLHG  GEDG VQ  LE+L++PY    IL+S+L+MD
Sbjct: 67  NETIDWDKKVAPSAIYEERAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLAMD 126

Query: 93  KMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           K+ +K+V+ S G+   P +       V     + +  ++ P   KP   GSS+GI   K 
Sbjct: 127 KITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEELTYPVFTKPSNMGSSVGI--SKS 184

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYE 203
           +    L      ++ +  ++L+EQ V+  E+  G++G+  +  T   E+ V    FY Y+
Sbjct: 185 ENQEELRQALKLAFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVAFYDYD 243

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            KY     T  +PAKI  D+   +++ A  A +AIG  G+SR DF +     ++F  E+N
Sbjct: 244 AKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDFFYTDKG-EIFLNELN 302

Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             PG T  S++P +    G ++ +L+  +VE
Sbjct: 303 TMPGFTQWSMYPLLWDNMGITYPDLIERLVE 333


>gi|291562104|emb|CBL40920.1| D-alanine--D-alanine ligase [butyrate-producing bacterium SS3/4]
          Length = 353

 Score =  129 bits (324), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 85/257 (33%), Positives = 138/257 (53%), Gaps = 16/257 (6%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+ F VLHG +GEDG VQ ILEL +IPY   G+LASA+SMDK+ +K++VS  G+     +
Sbjct: 95  DVVFPVLHGLYGEDGTVQGILELAKIPYVGCGVLASAVSMDKLSTKRMVSGLGICQAAYV 154

Query: 112 LVNRFTM-DSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
            V +  + D   +IS        P  +KP   GSS G+      + +   L +++  ++ 
Sbjct: 155 SVMKAELKDMDAVISKIEKEIPYPVFVKPSNAGSSRGVTRADNREELITGLKEAA--DND 212

Query: 164 DQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI 219
            ++L+E+ + G E+ CGV GD     +  V EI +  ++FY ++ KY +  S  V+  ++
Sbjct: 213 RRILVEEMIVGREIECGVFGDGDSTKASGVGEI-LAAAEFYDFDAKYYNAESKTVVDPEL 271

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279
           P    + V+  A     A+   G+SR DF F      V + EIN  PG T +S++P +  
Sbjct: 272 PDGATERVREAAVKIFNAVDGYGLSRVDF-FVKADGTVVFNEINTLPGFTAISMYPMLWE 330

Query: 280 YAGYSFRELLLWMVEDA 296
             G   R+L+  +++ A
Sbjct: 331 ARGVDKRQLIDDLIDHA 347


>gi|294497054|ref|YP_003560754.1| D-alanine--D-alanine ligase [Bacillus megaterium QM B1551]
 gi|295702419|ref|YP_003595494.1| D-alanine--D-alanine ligase [Bacillus megaterium DSM 319]
 gi|294346991|gb|ADE67320.1| D-alanine--D-alanine ligase [Bacillus megaterium QM B1551]
 gi|294800078|gb|ADF37144.1| D-alanine--D-alanine ligase [Bacillus megaterium DSM 319]
          Length = 360

 Score =  129 bits (324), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 81/252 (32%), Positives = 133/252 (52%), Gaps = 13/252 (5%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+ F +LHG  GEDG VQ +LELL IPY  +G+LASA  MDK+  KQ+ +  G+P    +
Sbjct: 95  DVIFPLLHGPNGEDGTVQGLLELLNIPYVGNGVLASAAGMDKVVMKQLFAQAGLPQVEYV 154

Query: 112 LVNRFTMDSQ--------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
              R   ++           +  P  +KP   GSS+GI      + +    +++  ++  
Sbjct: 155 SFIRREWEADRTAAYEKVETLGYPCFVKPANLGSSVGISKCDNREELEAAFVEAFLFDR- 213

Query: 164 DQLLIEQYVDGIELTCGVMG--DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL 221
            ++++E    G E+  GV+G  +A+  V    +PK  FY Y+ KY   ++  ++PA+I  
Sbjct: 214 -KIIVEAAAVGREVEIGVLGNDEAACSVVGEILPKKAFYDYKAKYEDGDTGLIIPAEITE 272

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYA 281
           + ++E+  LA  A +AI   G+ R+DF       K    E+N  PG TP S+FP +  +A
Sbjct: 273 EQHQEMSALAIKAFKAIDGSGLVRADFFLTS-EGKFIINEVNTMPGFTPFSMFPLLWKHA 331

Query: 282 GYSFRELLLWMV 293
           G  + +L+  +V
Sbjct: 332 GVEYPDLIEKLV 343


>gi|288904861|ref|YP_003430083.1| D-alanyl-D-alanine ligase [Streptococcus gallolyticus UCN34]
 gi|288731587|emb|CBI13142.1| D-alanyl-D-alanine ligase [Streptococcus gallolyticus UCN34]
          Length = 348

 Score =  129 bits (324), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 98/333 (29%), Positives = 159/333 (47%), Gaps = 43/333 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           + +L GG S+EREVS+ S ++   A+    F V    + +S   +               
Sbjct: 6   LVLLYGGRSAEREVSVLSAESVMRAINYDKFFVKTYFITQSGDFIKTQEFSSKPADDEKL 65

Query: 49  -----------LKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
                      +KP        + F VLHG  GEDG +Q  LE+L++PY  + IL+S+++
Sbjct: 66  MTNATVVESQKIKPSDIYEEGAVVFPVLHGPMGEDGSIQGFLEILKMPYVGTNILSSSVA 125

Query: 91  MDKMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
           MDK+ +K V+ S GVP+   +       + +   +    ++ P  +KP   GSS+GI   
Sbjct: 126 MDKISTKHVLESAGVPLVAYVTYVEGADLEKAVTEVNEKLTYPVFVKPANMGSSVGI--S 183

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYS 201
           K D    L      +  +  ++LIE  V+  E+  G++G+A +  T   E+ V    FY 
Sbjct: 184 KADDEEGLRSAIDLALKYDSRILIETGVNAREIEVGILGNADVQTTLPGEV-VKDVAFYD 242

Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
           Y+ KY     T  +PA I   I +E++  A  A +AIG  G+SR DF        V+  E
Sbjct: 243 YDAKYIDNKITMDIPAHIDSSIMEEMRGYATTAFRAIGGCGLSRCDFFLTE-DGHVYLNE 301

Query: 262 INVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           +N  PG T  S++P +    G ++ +L+  +VE
Sbjct: 302 LNTMPGFTQWSMYPLLWENMGLAYSDLIEKLVE 334


>gi|257069004|ref|YP_003155259.1| D-alanine--D-alanine ligase [Brachybacterium faecium DSM 4810]
 gi|256559822|gb|ACU85669.1| D-alanine--D-alanine ligase [Brachybacterium faecium DSM 4810]
          Length = 371

 Score =  129 bits (323), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 85/266 (31%), Positives = 143/266 (53%), Gaps = 20/266 (7%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+ + +LHG +GEDG VQ +LE+L+IPY  SG+LASA +MDK  +K V+ + G+   P I
Sbjct: 105 DVFWPLLHGVYGEDGTVQGMLEMLDIPYVGSGVLASAAAMDKAATKLVLRAAGLDCAPGI 164

Query: 112 LV--NRFTMDSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
           +V  +R+  +S  + +        P+ +KP + GSSLG+  +       L+     ++  
Sbjct: 165 VVHEDRWAEESHRVATYLRRNHPLPWFVKPARAGSSLGVTRVTDPAQ--LEAAMKEAFAE 222

Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKS-------DFYSYELKYSSLNSTHV- 214
             ++L+E+ +D  E+ CGV+  A        +P         +FY YE KY    +  + 
Sbjct: 223 DPKVLVEEGLDAREVECGVLQGADRQEPSTTLPGEVKVGRDLEFYDYEAKYFGKGTVSID 282

Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274
           +PA +P  + +EV+  +  A +A+G  G++R D +F     +V   E+N  PG TP S+F
Sbjct: 283 VPAALPDAVLEEVRETSCRAFRALGLEGLARVD-MFVTSDHRVLINEVNTMPGFTPYSMF 341

Query: 275 PEMAAYAGYSFRELLLWMVEDASCLR 300
           P +    G S+ +L+  ++E A   R
Sbjct: 342 PVLWENMGLSYADLIAELIEQARSRR 367


>gi|325109113|ref|YP_004270181.1| D-alanine--D-alanine ligase [Planctomyces brasiliensis DSM 5305]
 gi|324969381|gb|ADY60159.1| D-alanine--D-alanine ligase [Planctomyces brasiliensis DSM 5305]
          Length = 312

 Score =  129 bits (323), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 93/295 (31%), Positives = 145/295 (49%), Gaps = 17/295 (5%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVS---QIDVDRSVGLVLAHLKPDLAFNVLH 59
           +LMGG S+ERE+SL SGKA  +AL + G  V+    ID   +  ++  H   D+ F  LH
Sbjct: 5   LLMGGASAEREISLLSGKAVQAALLNLGHHVTVHDPIDAPPAADVLQRH---DVVFLALH 61

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV------PVCPSILV 113
           G  GEDG +Q++LE   +P+T S   AS ++  K  SK      G+      P      +
Sbjct: 62  GTGGEDGQIQSLLEQANVPFTGSNADASRIAFHKGLSKIRFQQAGLATPDAEPFRIDEAI 121

Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
            +    +  L+S P+ +KP   GSSLG+  I   + +P  +      +     LIE+ + 
Sbjct: 122 EKIQNRAARLVS-PWFVKPDAQGSSLGVSKIDSPEDLPSAVDSVRKLDKAG--LIEEAIS 178

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           G E T G+    +     I   + +F +Y  KY    + H +      +  K++  +A  
Sbjct: 179 GTEWTVGLFDSVTFPPVAIQAHR-EFNTYAAKYEQAAAKHTINRGAATEAEKQLMAVARE 237

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           A+QA+G  G++R D + D +    + LE+N  PGMT  S  P+ AA  G+S  EL
Sbjct: 238 AYQAVGATGLARVDLICD-VQGNPWILEVNTIPGMTETSTVPKAAAAFGWSLGEL 291


>gi|300870859|ref|YP_003785730.1| D-alanine-D-alanine ligase [Brachyspira pilosicoli 95/1000]
 gi|300688558|gb|ADK31229.1| D-alanine-D-alanine ligase [Brachyspira pilosicoli 95/1000]
          Length = 323

 Score =  129 bits (323), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 96/304 (31%), Positives = 156/304 (51%), Gaps = 18/304 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQ-----IDVDRSVGLV--LAHLKPDL 53
           +AVL GGIS EREVSL SGK    AL    +K  +     IDV     LV  L     + 
Sbjct: 20  IAVLHGGISDEREVSLRSGKNVFEAL--TSYKELKDSTILIDVKDHYELVEILKKENVEY 77

Query: 54  AFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +N+LHG FGEDG +Q +L+ L I YT    L S+L M+K+ +K++  S  +      L+
Sbjct: 78  CYNILHGTFGEDGTIQGLLDCLNIKYTGENTLVSSLCMNKVYTKRIWLSSNISTVDFQLL 137

Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
                ++    + P ++KP+  GSS+G+ +IK  +    ++++     H     +E Y+ 
Sbjct: 138 EDAVKNNNISFNFPIILKPISSGSSVGVSLIKTKEEFD-NIVKDIKDIH--NYFLEPYIK 194

Query: 174 GIELTCGVMGDASLDVTEIAV----PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           G E+T G++ D   D+    +    PK++ Y Y+ KY+   +   +PAK+  DI K++  
Sbjct: 195 GKEVTVGLVRDND-DIYVFPILGINPKNEIYDYDAKYTPGKTEMEIPAKLDKDIEKKLIE 253

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
               A+  +GC G+ R D +       +  +E+N Q GMT  S  P MA      F +++
Sbjct: 254 NCKKAYDVLGCEGLCRIDAIISD-DGFINLMEVNTQGGMTNTSDIPAMARNINMPFEDVV 312

Query: 290 LWMV 293
           L+++
Sbjct: 313 LYIL 316


>gi|113477630|ref|YP_723691.1| D-alanyl-alanine synthetase A [Trichodesmium erythraeum IMS101]
 gi|123351842|sp|Q10X06|DDL_TRIEI RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|110168678|gb|ABG53218.1| D-alanine--D-alanine ligase [Trichodesmium erythraeum IMS101]
          Length = 366

 Score =  129 bits (323), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 80/259 (30%), Positives = 137/259 (52%), Gaps = 20/259 (7%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+ F +LHG  GEDG +Q +L+L+++P+  SG+L SA+ MDK+  K      G+P     
Sbjct: 104 DVWFPILHGPNGEDGTIQGLLKLMQVPFVGSGVLGSAMGMDKIAMKIAFDHAGLPQVKYQ 163

Query: 112 LVNRFTMDSQHLISP------------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
           +V R  + S   + P            P  +KP   GSS+GI  ++    +   L  ++S
Sbjct: 164 VVTRSQIWSNSCVFPKLCDDIETTLEYPCFVKPANLGSSVGIAKVRSRSELETALDNAAS 223

Query: 160 WNHGDQLLIEQYVDGIELTCGVMGD----ASLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215
           ++   ++++E  V+  EL C V+G+    AS+ V EI    SDFY YE KY+   +   +
Sbjct: 224 YDR--RIIVEAGVEAKELECAVLGNDMPKASI-VGEITY-NSDFYDYETKYTEGKADLHI 279

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275
           PA++   I  +++ +A  A  A+   G++R DF +   + ++   EIN  PG T  S++P
Sbjct: 280 PARVSEAIATKIKEMATQAFLAVDAAGLARVDFFYVEKTGEILINEINTMPGFTSSSMYP 339

Query: 276 EMAAYAGYSFRELLLWMVE 294
            +   +G  F EL+  +++
Sbjct: 340 MLWEASGIPFSELVDTLIQ 358


>gi|228937527|ref|ZP_04100169.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228970414|ref|ZP_04131069.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228976984|ref|ZP_04137392.1| D-alanine--D-alanine ligase [Bacillus thuringiensis Bt407]
 gi|228782731|gb|EEM30901.1| D-alanine--D-alanine ligase [Bacillus thuringiensis Bt407]
 gi|228789300|gb|EEM37224.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228822138|gb|EEM68124.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|326938016|gb|AEA13912.1| D-alanyl-alanine synthetase A [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 361

 Score =  129 bits (323), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 78/249 (31%), Positives = 136/249 (54%), Gaps = 14/249 (5%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-- 109
           D+ F +LHG  GEDG VQ +LEL+ IPY  +G+LAS+  MDK+  K + +  G+      
Sbjct: 95  DVIFPLLHGPNGEDGTVQGLLELMNIPYVGNGVLASSAGMDKVVMKNIFAEAGLKQAKYA 154

Query: 110 SILVNRFTMDSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
           S + + +  D Q   S        P  +KP   GSS+GI   K  + +    +++  ++ 
Sbjct: 155 SFIRSAWEKDRQEAYSKVEDKLGYPCFVKPANLGSSVGINKCKNREELENAFVEAFQFDR 214

Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVTEIA--VPKSDFYSYELKYSSLNSTHVLPAKIP 220
             ++++E+ + G E+  GV+G+     + +   VPK DFY Y+ KY   ++  ++PA++ 
Sbjct: 215 --KIIVEENIVGREVEVGVLGNDEPKCSVVGEIVPKKDFYDYKSKYIDGDTALIIPAEMT 272

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280
            +    ++R A +A Q++   G++R+DF F     +V+  E+N  PG TP S+FP +  +
Sbjct: 273 EEESDVIKRDAIIAFQSLDGAGLTRADF-FLTKDGEVYINEVNTMPGFTPFSMFPLLWQH 331

Query: 281 AGYSFRELL 289
            G  + EL+
Sbjct: 332 TGLPYPELI 340


>gi|328945544|gb|EGG39695.1| D-alanine-D-alanine ligase [Streptococcus sanguinis SK1087]
          Length = 353

 Score =  129 bits (323), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 99/340 (29%), Positives = 167/340 (49%), Gaps = 46/340 (13%)

Query: 3   VLMGGISSEREVSLSSGKACASAL-------------EDAGFKVSQ-------------- 35
           +L GG S+EREVS+ S ++   A+             +D  F  +Q              
Sbjct: 13  LLYGGRSAEREVSVLSAESVMRAVNYDRFSVKTYFITKDGDFIQTQEFEATPAADEKLMT 72

Query: 36  ---IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
              +D+ R +     +    + F VLHG  GEDG +Q  LE+L++PY    IL+S+L+MD
Sbjct: 73  NATVDMSRKIKPSDIYEAGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNILSSSLAMD 132

Query: 93  KMRSKQVVSSCGVPVCPSILV------NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           K+ +K+V+ S G+   P + V       +   + +  +S P   KP   GSS+GI   K 
Sbjct: 133 KITTKRVLESAGIAQVPYVAVVDGEDLEQKIQEIEEKLSYPVFTKPSNMGSSVGI--SKS 190

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYE 203
           D    L +    ++ +  ++L+EQ V   E+  G++G+A +  +   E+ V    FY Y+
Sbjct: 191 DNQEELRVSLELAFKYDSRVLVEQGVTAREIEVGLLGNADVKSSLPGEV-VKDVAFYDYQ 249

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            KY     T  +PA++P  +   +++ A  A +A+G  G+SR DF +     +VF  E+N
Sbjct: 250 AKYIDNKITMAIPAQLPEGVVNTMRQNAETAFRALGGLGLSRCDFFYAE-DGQVFLNELN 308

Query: 264 VQPGMTPVSIFPEMAAYAGYSFREL---LLWMVEDASCLR 300
             PG T  S++P +    G ++ +L   L+ + E+A   R
Sbjct: 309 TMPGFTQWSMYPLLWENMGLAYPDLIEKLVGLAEEAFAKR 348


>gi|327194156|gb|EGE61024.1| D-alanine-D-alanine ligase protein [Rhizobium etli CNPAF512]
          Length = 358

 Score =  129 bits (323), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 85/259 (32%), Positives = 146/259 (56%), Gaps = 24/259 (9%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+ F VLHG +GEDG VQ + E+  +P    GIL SA ++DK  +K+++ + G+PV  ++
Sbjct: 98  DILFPVLHGPYGEDGSVQGLAEVARVPLAGCGILGSAAALDKDIAKRLLRAAGLPVARAV 157

Query: 112 LVNR------FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
            V         T++S+  +  P  IKP + GSS+G+  +   Q     L +  ++ H   
Sbjct: 158 TVRADAAPSLATLESE--LGLPLFIKPARQGSSVGVAKVHASQEFAPALAE--AFRHDHT 213

Query: 166 LLIEQYVDGIELTCGVMGDASLDV-----TEIAVPKSD--FYSYELKYSSLNSTHV-LPA 217
           LL E++V G E+   V+ DA+ D+      EI VP  +  FY+Y+ KY   N   + +PA
Sbjct: 214 LLAEEFVAGREIEFSVLEDAAGDLFVSRPGEI-VPAENHGFYNYDAKYVDENGAALKVPA 272

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL--EINVQPGMTPVSIFP 275
           ++P ++   ++ +A  A +A+GC G++R DF    L+  + +L  EIN  PG T +S++ 
Sbjct: 273 ELPPNVEAAMRDMAAKAFRAVGCDGMARVDFF---LTSDMRFLINEINTIPGFTDISMYS 329

Query: 276 EMAAYAGYSFRELLLWMVE 294
           +  A +G S+ E++  +V+
Sbjct: 330 KAMAASGVSYAEVIDRLVD 348


>gi|307129501|ref|YP_003881517.1| D-alanine--D-alanine ligase [Dickeya dadantii 3937]
 gi|306527030|gb|ADM96960.1| D-alanine--D-alanine ligase [Dickeya dadantii 3937]
          Length = 366

 Score =  129 bits (323), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 89/347 (25%), Positives = 164/347 (47%), Gaps = 57/347 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------------------- 40
           + V+ GG SSE EVSL S K    A++   F V  + +D+                    
Sbjct: 6   VGVVFGGKSSEHEVSLQSAKNIVDAIDKTRFDVVLLGIDKQGEWHVNDASNYLLNADNPA 65

Query: 41  ---------SVGLVLAHL--------------KPDLAFNVLHGNFGEDGLVQAILELLEI 77
                    +V L+                  + D+ F ++HG  GEDG +Q +L +  I
Sbjct: 66  LIALNRSSQNVALIPGQTHHQLIDTASASALSQIDVIFPIVHGTLGEDGSLQGLLRMANI 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH-------LISPPYVI 130
           P+  S +L SA+SMDK  +K+++   G+ V P + + R    ++H        +  P  +
Sbjct: 126 PFIGSSVLGSAVSMDKDVTKRLLRDAGLQVAPFVTLTRANR-ARHPYDSVTAQLGLPLFV 184

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD--ASLD 188
           KP   GSS+G+  ++        +  +  ++H  ++L+E  + G E+ C V+G+      
Sbjct: 185 KPANQGSSVGVSKVRNQAEFERAVDLAFRYDH--KVLVESAIVGREIECAVLGNDYPKAS 242

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           V    V   +FYSY+ KY + +   V +PA +  ++++ ++ +A  A Q + C+G++R D
Sbjct: 243 VCGEIVLHDEFYSYDTKYINEDGAAVAIPAAMDDEVHQHIRDIALRAFQTLDCQGMARVD 302

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
               P  ++V   E+N  PG T +S++P++   +G  +  L+  ++E
Sbjct: 303 VFLTP-DQQVVVNEVNTLPGFTNISMYPKLWEASGLGYTALITQLIE 348


>gi|113955096|ref|YP_729951.1| D-alanyl-alanine synthetase A [Synechococcus sp. CC9311]
 gi|123132673|sp|Q0IC71|DDL_SYNS3 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|113882447|gb|ABI47405.1| D-alanine--D-alanine ligase [Synechococcus sp. CC9311]
          Length = 353

 Score =  129 bits (323), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 89/285 (31%), Positives = 141/285 (49%), Gaps = 27/285 (9%)

Query: 26  LEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
           L  AGF+   ID DR           D+ F VLHG  GEDG VQ +  L+  PY  SG+L
Sbjct: 80  LPPAGFRSLPIDNDRV----------DVWFPVLHGPNGEDGTVQGLFTLMGQPYVGSGVL 129

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVN-----------RFTMDSQHLISPPYVIKPLK 134
            SA+ MDK+  K   ++ G+P  P + +N           +     +  +  P  +KP  
Sbjct: 130 GSAVGMDKLAMKAAFAAAGLPQVPYVGLNVADLNHPERQNKLVARIEAELGYPCFVKPAN 189

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD---VTE 191
            GSS+GI   +    +   L +++   H  +L++E  V   EL C V+G   L    V E
Sbjct: 190 MGSSVGISKARHRDQLLAGLKEAA--RHDTRLVVEHGVSARELECAVLGRQQLKASVVGE 247

Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
           I+  ++D+Y YE KY+   S  ++PA +P  +  ++Q +A  A  A+   G++R D  +D
Sbjct: 248 ISF-EADWYDYETKYTDGCSQTLIPAPLPDQVSAQIQAIALQACTAVHAYGLARVDVFYD 306

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             S  ++  EIN  PG T  S++P +   +G +  +L+  +V  A
Sbjct: 307 EKSGDIWLNEINTLPGFTSQSMYPMLWEASGVALPDLVAQLVHTA 351


>gi|308188188|ref|YP_003932319.1| D-alanine-D-alanine ligase A [Pantoea vagans C9-1]
 gi|308058698|gb|ADO10870.1| D-alanine-D-alanine ligase A [Pantoea vagans C9-1]
          Length = 365

 Score =  129 bits (323), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 97/347 (27%), Positives = 170/347 (48%), Gaps = 57/347 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS------------------V 42
           + ++ GG S+E EVSL S K    A++   F V  + +D+                    
Sbjct: 6   VGIVFGGKSAEHEVSLQSAKNILEAIDKTRFDVVLLGIDKQGHWRLNDASNFLLNAENPA 65

Query: 43  GLVLAHLKPDLA-------------------------FNVLHGNFGEDGLVQAILELLEI 77
            + L H   D+A                         F ++HG  GEDG +Q +L +  +
Sbjct: 66  LIALNHAAEDVALVPGNTQQQIITRHNAHPLSQIDVIFPIVHGTLGEDGSLQGLLRMASL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN---RFTMDSQHLISP---PYVIK 131
           P+  S +L SA+SMDK  +K+++   G+ V P + V    R  +D++ +I+    P  IK
Sbjct: 126 PFVGSDVLGSAVSMDKDFTKRLLRDAGLNVAPWLSVTQAQRAQLDAEAVIARFGLPLFIK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT- 190
           P   GSS+G  V K D     D   + +++   ++LIEQ + G E+ C V+G+ + + + 
Sbjct: 186 PANQGSSVG--VSKVDSIEEFDAALALAFSFDRKVLIEQGIKGREIECAVLGNDAPEASP 243

Query: 191 --EIAVPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
             E+ V  + FYSY+ KY S   +  V+PA I  +    ++ +A  A  A+ C G++R D
Sbjct: 244 CGEVVVHDA-FYSYDTKYISESGAQTVVPAAIAAETSDAIRDVAIKAFSALECFGMARVD 302

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            +F     ++   E+N  PG T +S++P++   AG S+++L+  +++
Sbjct: 303 -VFLTNDGEIIVNEVNTLPGFTNISMYPKLWQAAGLSYQDLISRLID 348


>gi|229588254|ref|YP_002870373.1| D-alanyl-alanine synthetase A [Pseudomonas fluorescens SBW25]
 gi|229360120|emb|CAY46974.1| D-alanine--D-alanine ligase A [Pseudomonas fluorescens SBW25]
          Length = 364

 Score =  129 bits (323), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 94/296 (31%), Positives = 156/296 (52%), Gaps = 30/296 (10%)

Query: 10  SEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ 69
           S RE+++  GKA    +E +G            GL L H+  D+ F ++HG  GEDG +Q
Sbjct: 72  SNRELAVVPGKASQQLVETSG-----------TGL-LEHV--DVIFPIVHGTLGEDGCLQ 117

Query: 70  AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV-----NRFTMDSQ-HL 123
            +L + ++P+  S +L SA+ MDK  SK+++   G+ V P I +      R + D+  + 
Sbjct: 118 GLLRMADLPFVGSDVLGSAVCMDKDISKRLLRDAGIAVTPFITLTRSNATRTSFDTAVNT 177

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           +  P  +KP   GSS+G+  +  +      +  +  ++  +++L+E  V G E+ C V+G
Sbjct: 178 LGLPMFVKPANQGSSVGVSKVGTEAEYHAAVELALGFD--EKVLVESAVKGREIECAVLG 235

Query: 184 DA---SLDVTEIAVPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIG 239
           +    +    EI V  S FYSY+ KY    +   V+PA I  D  + ++ LA  A + +G
Sbjct: 236 NEHPIASGCGEIVV-SSGFYSYDSKYIDDQAAQVVVPAAISHDASERIRGLAIEAFEVLG 294

Query: 240 CRGISRSD-FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           C G++R D FL D     V   EIN  PG T +S++P++   AG S+ EL+  ++E
Sbjct: 295 CSGLARVDVFLTD--DGNVLINEINSLPGFTRISMYPKLWQAAGMSYSELVSRLIE 348


>gi|260437788|ref|ZP_05791604.1| D-alanine--D-alanine ligase A [Butyrivibrio crossotus DSM 2876]
 gi|292809812|gb|EFF69017.1| D-alanine--D-alanine ligase A [Butyrivibrio crossotus DSM 2876]
          Length = 356

 Score =  129 bits (323), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 80/258 (31%), Positives = 134/258 (51%), Gaps = 15/258 (5%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC-GVPVCPS 110
           D+ F VLHG +GEDG +Q ILEL  IPY   G++ASA+SMDK+ +K++V     V     
Sbjct: 95  DVVFPVLHGLYGEDGTIQGILELAGIPYVGCGVVASAVSMDKLFTKKIVDGLKDVRQAKY 154

Query: 111 ILVNRFTMDS--------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
           + V R+ +          +  +  P  +KP   GSS G  V K      L+     +  H
Sbjct: 155 VPVRRYELKEMDKVLDGIEERLPYPVFVKPSNAGSSKG--VSKAGDRAGLEKALRLAAEH 212

Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVTEI----AVPKSDFYSYELKYSSLNSTHVLPAK 218
            +++L+E+ + G E+ C V+G + +  + +    A   + FY ++ KY++  S  V+  +
Sbjct: 213 DEKILVEETIVGREIECAVLGTSDVKASGVGEILAADSAAFYDFDAKYNNAESKTVINPE 272

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278
           +P     EV+  A    +A+   G+SR DF  +  +  V + EIN  PG T +S++P + 
Sbjct: 273 LPDGKTDEVRNDAVRIFKAVDGFGLSRVDFFIENGTNDVVFNEINTMPGFTSISMYPMLW 332

Query: 279 AYAGYSFRELLLWMVEDA 296
           A  G   +EL+  ++ +A
Sbjct: 333 ADRGIEKKELVDELINEA 350


>gi|312149254|gb|ADQ29325.1| D-alanine--D-alanine ligase [Borrelia burgdorferi N40]
          Length = 361

 Score =  129 bits (323), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 89/344 (25%), Positives = 172/344 (50%), Gaps = 50/344 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAG-FKVSQIDVDRSVGL--------------- 44
           + ++ GG+S E E+S  S  +   AL D   + +  + +D+  G+               
Sbjct: 5   LMLIFGGVSFEHEISCKSAYSIYLALLDLNKYNIYPVYIDKCTGVWYLLDSVSDPPKPIN 64

Query: 45  --VL---------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87
             VL                +LK D+ F V+HG  GEDG +Q +L++++IP   +GI+ S
Sbjct: 65  TDVLPIVSLLPGFGIFSNNKNLKIDVVFPVVHGRTGEDGAIQGVLKVMDIPCVGAGIIGS 124

Query: 88  ALSMDKMRSKQVVSSCGVPVCPSILVNR--FTMDSQHL-------ISPPYVIKPLKGGSS 138
           A+S +K   K ++ S  +P+ P I   +  + +D + +       +  P ++KP   GSS
Sbjct: 125 AISSNKYFCKLLLKSFDIPLVPFIGFRQHDYFLDKEEIKRNVKEALGYPVIVKPAVLGSS 184

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV---TEIAVP 195
           +GI V   +  I   + ++  ++    ++IE++++  E+ C ++G+  + +    E+ V 
Sbjct: 185 IGINVAYSENQIESFIKEALKYDL--TIVIEKFIEVREIECSIIGNEKMKIFSPGEVVVQ 242

Query: 196 KSDFYSYELKYSSLNSTHV---LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
              FY Y+ KYS +    +   +PA +  +    ++  AFLA++ +  RG++R DF  + 
Sbjct: 243 DFIFYDYDAKYSVIPGNSIIFNIPAHLETNQLLSIKEYAFLAYKNLELRGMARVDFFVEK 302

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            S  ++  EIN  PG T +S+F +M +  G  F++L+  +++ A
Sbjct: 303 KSGTIYLNEINTIPGFTDISMFAKMCSNDGLQFKDLVDNLIDYA 346


>gi|163843534|ref|YP_001627938.1| D-alanine--D-alanine ligase [Brucella suis ATCC 23445]
 gi|163674257|gb|ABY38368.1| D-alanine--D-alanine ligase [Brucella suis ATCC 23445]
          Length = 353

 Score =  129 bits (323), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 81/257 (31%), Positives = 141/257 (54%), Gaps = 18/257 (7%)

Query: 50  KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109
           K D+ F VLHG  GEDG VQ + ++  +P    GI  SA ++DK  +K++V+  G+    
Sbjct: 94  KIDIIFPVLHGLHGEDGAVQGLAQVARVPLAGCGIPGSANALDKDIAKRLVNEAGLSTAK 153

Query: 110 SILVNRFTMDS----QHLISPPYVIKPLKGGSSLGI--IVIKKDQSIPLDLLQSSSWNHG 163
           S+ + R  + +    +  +  P  IKP + GSS+G+  +V + D    +    S  + + 
Sbjct: 154 SVTITREEVPAFSALEQALGLPIFIKPARQGSSVGVHKVVTEADYQAAM----SDGFTYD 209

Query: 164 DQLLIEQYVDGIELTCGVMGD--ASLDVTEIA--VPKSD--FYSYELKYSSLNSTHV-LP 216
           D+LL E+++   E+ CGV+ D   +L V+     VP     FYSY+ KY   + T + +P
Sbjct: 210 DKLLAEEFIQAREVECGVLEDEGGALFVSRAGEIVPAESHCFYSYDAKYIDADGTEIKVP 269

Query: 217 AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPE 276
           A++P  +  E++ +A  A + +GC  ++R DF F    R++   EIN  PG T +S++ +
Sbjct: 270 AELPEQVENEIRAIAARAFRVLGCDSMARVDF-FVTADRRIVLNEINTIPGFTDMSMYSK 328

Query: 277 MAAYAGYSFRELLLWMV 293
           + A +G S+ E++  +V
Sbjct: 329 VMAVSGVSYPEIINRLV 345


>gi|225861499|ref|YP_002743008.1| D-alanyl-alanine synthetase A [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|254767744|sp|C1CST6|DDL_STRZT RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|225727438|gb|ACO23289.1| D-alanine--D-alanine ligase (D-alanylalanine
           synthetase)(D-Ala-D-Ala ligase) [Streptococcus
           pneumoniae Taiwan19F-14]
 gi|327389857|gb|EGE88202.1| D-alanine--D-alanine ligase family protein [Streptococcus
           pneumoniae GA04375]
          Length = 347

 Score =  129 bits (323), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 100/331 (30%), Positives = 160/331 (48%), Gaps = 43/331 (12%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKV----------------------------- 33
           +L GG S+EREVS+ S ++   A+    F V                             
Sbjct: 7   LLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDFIKTQEFSHAPGQEDRLMT 66

Query: 34  -SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
              ID D+ V     + +  + F VLHG  GEDG VQ  LE+L++PY    IL+S+L+MD
Sbjct: 67  NETIDWDKKVAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLAMD 126

Query: 93  KMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           K+ +K+V+ S G+   P +       V     + +  ++ P   KP   GSS+GI   K 
Sbjct: 127 KITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLAYPVFTKPSNMGSSVGI--SKS 184

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYE 203
           +    L      ++ +  ++L+EQ V+  E+  G++G+  +  T   E+ V    FY Y+
Sbjct: 185 ENQEELRPALELAFRYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVAFYDYD 243

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            KY     T  +PAKI  D+   +++ A  A +AIG  G+SR DF +     ++F  E+N
Sbjct: 244 AKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDFFYTDKG-EIFLNELN 302

Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             PG T  S++P +    G S+ EL+  +V+
Sbjct: 303 TMPGFTQWSMYPLLWDNMGISYPELIERLVD 333


>gi|290580905|ref|YP_003485297.1| putative D-alanine-D-alanine ligase [Streptococcus mutans NN2025]
 gi|254997804|dbj|BAH88405.1| putative D-alanine-D-alanine ligase [Streptococcus mutans NN2025]
          Length = 349

 Score =  129 bits (323), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 103/334 (30%), Positives = 166/334 (49%), Gaps = 46/334 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKV---------------------SQIDVD 39
           + +L GG S+ER+VS+ S ++   A+    F V                     S+ D  
Sbjct: 6   LVLLYGGRSAERDVSVLSAESVMRAINYDNFLVKTYFITQAGDFIKTQEFDSQPSETDKL 65

Query: 40  RSVGLVLA--HLKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
            +   ++A   +KP        + F VLHG  GEDG +Q  LE+L++PY  + IL+S+++
Sbjct: 66  MTNDTIIASQKIKPSDIYEEEAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGTNILSSSVA 125

Query: 91  MDKMRSKQVV-SSCGVPVCPSI-------LVNRFTMDSQHLISPPYVIKPLKGGSSLGII 142
           MDK+ +KQV+ S+  +P    +       L ++     + LI P +V KP   GSS+GI 
Sbjct: 126 MDKITTKQVLESATTIPQVAYVALIEGEPLESKLAEVEEKLIYPVFV-KPANMGSSVGI- 183

Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDF 199
             K +    L    + +  +  ++LIEQ VD  E+  G++G+  +  T   EI V    F
Sbjct: 184 -SKAENRTDLKQAIALALKYDSRVLIEQGVDAREIEVGILGNTDVKTTLPGEI-VKDVAF 241

Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
           Y YE KY     T  +PA+I   I ++++  A  A + +GC G+SR DF       KV+ 
Sbjct: 242 YDYEAKYIDNKITMAIPAEIDPVIVEKMRDYAATAFRTLGCCGLSRCDFFLTE-DGKVYL 300

Query: 260 LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            E+N  PG T  S++P +    G S+ +L+  +V
Sbjct: 301 NELNTMPGFTQWSMYPLLWENMGLSYSDLIEELV 334


>gi|154492072|ref|ZP_02031698.1| hypothetical protein PARMER_01703 [Parabacteroides merdae ATCC
           43184]
 gi|154087858|gb|EDN86903.1| hypothetical protein PARMER_01703 [Parabacteroides merdae ATCC
           43184]
          Length = 326

 Score =  129 bits (323), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 90/323 (27%), Positives = 159/323 (49%), Gaps = 33/323 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR---SVGLVLAHLKP------ 51
           +A++ GG SSE  +SL S +   S L+   + V    V R   +V L      P      
Sbjct: 6   IAIVAGGDSSEIVISLKSAEGIFSFLDKDKYNVYIAIVKRDEWAVKLPGGEHTPIDKNDF 65

Query: 52  -----------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
                      D A+  +HG  GEDG +Q   +++ +PY+  G+  SAL+ +K      +
Sbjct: 66  SFRENGEIRHFDFAYITIHGTPGEDGRLQGYFDMIGMPYSSCGMFVSALTFNKFACNHYL 125

Query: 101 SSCGVPVCPSI-LVNRFTMDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
              GV +  SI L    T+  + ++S    P  +KP  GGSS G+  +K+  +I   +  
Sbjct: 126 KGFGVDIAHSIHLFKGQTVTDEEVVSRLGLPVFVKPNDGGSSFGVTKVKEASAIQPAI-- 183

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV----TEIAVPKSDFYSYELKYSSLNST 212
             +++ G +++IE ++DG E+TCG    A  +V    TE+ V  ++F+ ++ KY+     
Sbjct: 184 DKAFSEGREVVIESFIDGTEVTCGCYKTADKEVVFPLTEV-VTDNEFFDFDAKYNG-QVQ 241

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
            + PA+I  +  ++VQR     +  +G +G+ R D++  P   +   LE+N  PGMT  S
Sbjct: 242 EITPARISAEQTEKVQRETSRIYDILGAKGLIRVDYII-PADGEPKLLEVNTTPGMTATS 300

Query: 273 IFPEMAAYAGYSFRELLLWMVED 295
             P+    AG   ++++  ++E+
Sbjct: 301 FIPQQVRAAGLEMKDVMTDIIEN 323


>gi|306830913|ref|ZP_07464075.1| D-alanine-D-alanine ligase [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
 gi|304426936|gb|EFM30046.1| D-alanine-D-alanine ligase [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
          Length = 348

 Score =  129 bits (323), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 98/333 (29%), Positives = 159/333 (47%), Gaps = 43/333 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           + +L GG S+EREVS+ S ++   A+    F V    + +S   +               
Sbjct: 6   LVLLYGGRSAEREVSVLSAESVMRAINYDKFFVKTYFITQSGDFIKTQEFSSKPADDEKL 65

Query: 49  -----------LKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
                      +KP        + F VLHG  GEDG +Q  LE+L++PY  + IL+S+++
Sbjct: 66  MTNATVVESQKIKPSDIYEEGAVVFPVLHGPMGEDGSIQGFLEILKMPYVGTNILSSSVA 125

Query: 91  MDKMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
           MDK+ +K V+ S GVP+   +       + +   +    ++ P  +KP   GSS+GI   
Sbjct: 126 MDKISTKHVLESAGVPLVAYVTYVEGADLEKAVAEVNEKLTYPVFVKPANMGSSVGI--S 183

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYS 201
           K D    L      +  +  ++LIE  V+  E+  G++G+A +  T   E+ V    FY 
Sbjct: 184 KADDEEGLRSAIDLALKYDSRILIETGVNAREIEVGILGNADVQTTLPGEV-VKDVAFYD 242

Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
           Y+ KY     T  +PA I   I +E++  A  A +AIG  G+SR DF        V+  E
Sbjct: 243 YDAKYIDNKITMDIPAHIDSSIMEEMRGYATTAFRAIGGCGLSRCDFFLTE-DGHVYLNE 301

Query: 262 INVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           +N  PG T  S++P +    G ++ +L+  +VE
Sbjct: 302 LNTMPGFTQWSMYPLLWENMGLAYSDLIEKLVE 334


>gi|332522758|ref|ZP_08399010.1| D-ala D-ala ligase N-terminal domain protein [Streptococcus
           porcinus str. Jelinkova 176]
 gi|332314022|gb|EGJ27007.1| D-ala D-ala ligase N-terminal domain protein [Streptococcus
           porcinus str. Jelinkova 176]
          Length = 348

 Score =  128 bits (322), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 99/332 (29%), Positives = 164/332 (49%), Gaps = 43/332 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQ------------------------- 35
           + +L GG S+EREVS+ S ++   A+    F V                           
Sbjct: 6   LVLLYGGRSAEREVSVLSAESVMRAVNYDRFFVKTYFISQSGDFYKTQEWNQKPAETEKL 65

Query: 36  -----IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
                I  D  V     + +  + F +LHG  GEDG +Q  LE+L++PY  + IL+S+++
Sbjct: 66  MTNQTIVADAQVKASDIYEEGAVVFPILHGPMGEDGSIQGFLEVLKMPYVGTNILSSSVA 125

Query: 91  MDKMRSKQVVSSCGVP-VCPSILVNRFTM-----DSQHLISPPYVIKPLKGGSSLGIIVI 144
           MDK+ +K+V+ S GVP V  ++ +   ++     ++   +S P  +KP   GSS+GI   
Sbjct: 126 MDKITTKRVLESAGVPQVAYNVFIEGNSLEECIQETLTKLSFPMFVKPANMGSSVGI--S 183

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYS 201
           K D    L      +  +  ++LIEQ VD  E+  G++G+  +  T   E+ V +  FY 
Sbjct: 184 KADSETELREAIQLALQYDSRILIEQGVDAREIEVGLLGNTDIASTLPGEV-VKEVAFYD 242

Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
           Y+ KY     T  +PA++  D+  +++  A  A +A+GC G+SR DF F      ++  E
Sbjct: 243 YQAKYIDNKITMAIPAELETDLANKMRIYAENAFKALGCCGLSRCDF-FLTKDGFIYLNE 301

Query: 262 INVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +N  PG T  S++P +    G S+ EL+  +V
Sbjct: 302 LNTMPGFTQWSMYPLLWENMGLSYPELIERLV 333


>gi|221217556|ref|ZP_03589026.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase) [Borrelia
           burgdorferi 72a]
 gi|224534092|ref|ZP_03674675.1| D-alanine--D-alanine ligase [Borrelia burgdorferi CA-11.2a]
 gi|225548522|ref|ZP_03769570.1| D-alanine--D-alanine ligase [Borrelia burgdorferi 94a]
 gi|225549817|ref|ZP_03770781.1| D-alanine--D-alanine ligase [Borrelia burgdorferi 118a]
 gi|221192619|gb|EEE18836.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase) [Borrelia
           burgdorferi 72a]
 gi|224512791|gb|EEF83159.1| D-alanine--D-alanine ligase [Borrelia burgdorferi CA-11.2a]
 gi|225369625|gb|EEG99074.1| D-alanine--D-alanine ligase [Borrelia burgdorferi 118a]
 gi|225370785|gb|EEH00220.1| D-alanine--D-alanine ligase [Borrelia burgdorferi 94a]
          Length = 361

 Score =  128 bits (322), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 88/344 (25%), Positives = 172/344 (50%), Gaps = 50/344 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAG-FKVSQIDVDRSVGL--------------- 44
           + ++ GG+S E E+S  S  +   AL D   + +  + +D+  G+               
Sbjct: 5   LMLIFGGVSFEHEISCKSAYSIYLALLDLNKYNIYPVYIDKCTGVWYLLDSVSDPPKPIN 64

Query: 45  --VL---------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87
             VL                +L+ D+ F V+HG  GEDG +Q +L++++IP   +GI+ S
Sbjct: 65  TDVLPIVSLLPGFGIFSNNKNLEIDVVFPVVHGRTGEDGAIQGVLKVMDIPCVGAGIIGS 124

Query: 88  ALSMDKMRSKQVVSSCGVPVCPSILVNR--FTMDSQHL-------ISPPYVIKPLKGGSS 138
           A+S +K   K ++ S  +P+ P I   +  + +D + +       +  P ++KP   GSS
Sbjct: 125 AISSNKYFCKLLLKSFDIPLVPFIGFRQHDYFLDKEEIKRNVKETLGYPVIVKPAVLGSS 184

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV---TEIAVP 195
           +GI V   +  I   + ++  ++    ++IE++++  E+ C ++G+  + +    E+ V 
Sbjct: 185 IGINVAYSENQIESFIKEALKYDL--TIVIEKFIEAREIECSIIGNEKMKIFSPGEVVVQ 242

Query: 196 KSDFYSYELKYSSLNSTHV---LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
              FY Y+ KYS +    +   +PA +  +    ++  AFLA++ +  RG++R DF  + 
Sbjct: 243 DFIFYDYDAKYSVIPGNSIIFNIPAHLETNQLLSIKEYAFLAYKNLELRGMARVDFFVEK 302

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            S  ++  EIN  PG T +S+F +M +  G  F++L+  +++ A
Sbjct: 303 KSGTIYLNEINTIPGFTDISMFAKMCSNDGLQFKDLVDNLIDYA 346


>gi|187918073|ref|YP_001883636.1| D-alanyl-alanine synthetase A [Borrelia hermsii DAH]
 gi|229463733|sp|B2RZR0|DDL_BORHD RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|119860921|gb|AAX16716.1| D-alanine--D-alanine ligase [Borrelia hermsii DAH]
          Length = 365

 Score =  128 bits (322), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 88/337 (26%), Positives = 164/337 (48%), Gaps = 50/337 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASAL---EDAGFKVSQID------------------VD 39
           + ++ GG+S E E+SL S     SAL   +      S ID                  + 
Sbjct: 6   LMLIFGGVSFEHEISLRSAYGIYSALMKLDKYNLYPSFIDKITGIWYLLDSVPDAPELIK 65

Query: 40  RSVGLVLA------------HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87
           R    +++             L+ D+ F ++HG  GEDG +Q  L++++IP   +GIL S
Sbjct: 66  RDSSAIISLIPGCGIFVNDEDLEIDVVFPIVHGRTGEDGAIQGFLKMMDIPCVGAGILGS 125

Query: 88  ALSMDKMRSKQVVSSCGVPVCPSILVNRF---------TMDSQHLISPPYVIKPLKGGSS 138
           A+S++K   K ++ S  +P+ P I   ++           D +  ++ P ++KP   GSS
Sbjct: 126 AISINKYFCKLLLKSFNIPLVPFIGFRKYDYFLDKEGIKKDIKQSLNYPVIVKPAMLGSS 185

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV---TEIAVP 195
           +GI +   D  I  +     ++ +   +++E+++   E+ C V+G+  + +    EI V 
Sbjct: 186 IGISIAYNDTQI--EKCIEEAFEYDLTVVVEKFMKVREIECSVIGNEQIKIFTPGEIVVQ 243

Query: 196 KSDFYSYELKYSSLNSTHV---LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
              FY Y+ KYS++    V   +PA++ +    +++  AFL ++ +  RG++R DFL + 
Sbjct: 244 DFVFYDYDAKYSTIPGNSVVFNIPARLDMKHLLDIKEYAFLTYKCLELRGMARIDFLIEK 303

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
            +  ++  EIN  PG T +S+F +M  + G  +  L+
Sbjct: 304 DTNLIYVNEINTIPGFTDISMFSKMCEHDGLDYESLV 340


>gi|229028082|ref|ZP_04184233.1| D-alanine--D-alanine ligase [Bacillus cereus AH1271]
 gi|228733235|gb|EEL84066.1| D-alanine--D-alanine ligase [Bacillus cereus AH1271]
          Length = 361

 Score =  128 bits (322), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 94/338 (27%), Positives = 161/338 (47%), Gaps = 52/338 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------DRSVGLVL----- 46
           + +L GG S+E +VSL +  A   AL    F++  I +         +R  G V      
Sbjct: 6   LGLLYGGKSAEHQVSLQTALAAIKALNQDKFEIHPIYITEQGQWVRGERIEGEVTDVEVL 65

Query: 47  ---------------AHLKP---------DLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
                            + P         D+ F +LHG  GEDG VQ +LEL+ IPY  +
Sbjct: 66  KMSGAENAISPLSLSTEIIPSAASEENAIDVIFPLLHGPNGEDGTVQGLLELMNIPYVGN 125

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPL 133
           G+LASA  MDK+  K + +  G+         R T +          + ++  P  +KP 
Sbjct: 126 GVLASAAGMDKVVMKNIFAEAGLKQAKYASFIRSTWEKDCETAYEKVEEVLGYPCFVKPA 185

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
             GSS+GI   K  + +     ++  ++   ++++E+ + G E+  GV+G+     + + 
Sbjct: 186 NLGSSVGINKCKNREELENAFEEAFQFDR--KIIVEENIIGREVEVGVLGNDEPKCSVVG 243

Query: 194 --VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
             VPK DFY Y+ KY   ++  ++PA++  +    ++R A +A Q++   G++R+DF F 
Sbjct: 244 EIVPKKDFYDYKSKYIDGDTALIIPAEMTEEESNVIKRDAIIAFQSLDGAGLTRADF-FL 302

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
               +V+  E+N  PG TP S+FP +  + G  + EL+
Sbjct: 303 TKDGEVYINEVNTMPGFTPFSMFPLLWQHTGLPYPELI 340


>gi|282879374|ref|ZP_06288117.1| D-ala D-ala ligase N-terminal domain protein [Prevotella buccalis
           ATCC 35310]
 gi|281298487|gb|EFA90913.1| D-ala D-ala ligase N-terminal domain protein [Prevotella buccalis
           ATCC 35310]
          Length = 333

 Score =  128 bits (322), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 96/328 (29%), Positives = 156/328 (47%), Gaps = 37/328 (11%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---DRSV----GLVLAHLKPDL 53
           +A++ GG SSE +VS+ S +   S  +   + V  + +   D +V    G   +  K D 
Sbjct: 8   IAIVCGGDSSEYDVSIRSAQGLYSFFDKERYNVYIVTIKGQDWNVCFDNGDTASIDKNDF 67

Query: 54  AFN-------------VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           +F               +HG  GE+G++Q   ELL IPY+ SG+L  A++ +K      +
Sbjct: 68  SFVKEGEAVLFDYAYITIHGTPGENGIMQGYFELLHIPYSTSGVLVEAMTFNKYVLNNYL 127

Query: 101 SSCGVPVCPSILVNRFTMDS------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154
           ++ GV V  S+LV R   D       Q ++  P  +KP+  GSS G+  +K    +   L
Sbjct: 128 AAFGVKVAKSMLVKRGEEDKLCEQEVQDVLGMPCFVKPVADGSSFGVTKVKNTDQLAPAL 187

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV----TEIAVPKSDFYSYELKYSSLN 210
            +  ++   D  +IE ++DG EL+ G        V    TE+ V  ++F+ Y+ KY+   
Sbjct: 188 RR--AFMESDTAMIEHFMDGTELSIGCYKTREKSVVFPATEV-VSSNEFFDYDAKYNG-Q 243

Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF--DPLSRKVF-WLEINVQPG 267
              + PA+I     KEV       +  + C GI R D++   D   + V   LE+N  PG
Sbjct: 244 VQEITPARISEQTAKEVAEQTSRIYDILQCNGIIRIDYIITKDEAGQDVVNMLEVNTTPG 303

Query: 268 MTPVSIFPEMAAYAGYSFRELLLWMVED 295
           MTP S  P+    AG +  ++L  +VE+
Sbjct: 304 MTPTSFIPQQVRAAGLNITDVLTEIVEN 331


>gi|225852765|ref|YP_002732998.1| D-alanyl-alanine synthetase A [Brucella melitensis ATCC 23457]
 gi|256263750|ref|ZP_05466282.1| D-alanine-D-alanine ligase/VANA/B/C [Brucella melitensis bv. 2 str.
           63/9]
 gi|225641130|gb|ACO01044.1| D-alanine--D-alanine ligase [Brucella melitensis ATCC 23457]
 gi|263093808|gb|EEZ17813.1| D-alanine-D-alanine ligase/VANA/B/C [Brucella melitensis bv. 2 str.
           63/9]
 gi|326409293|gb|ADZ66358.1| D-alanyl-alanine synthetase A [Brucella melitensis M28]
          Length = 353

 Score =  128 bits (322), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 96/343 (27%), Positives = 168/343 (48%), Gaps = 55/343 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           + VL GG S+E +VS+ S     +AL+ A ++   + V R+   +L+             
Sbjct: 8   IVVLFGGRSAEHDVSVLSATNVMNALDPAKYEAVPVFVTRAGQWLLSRFVNGALEKLSSG 67

Query: 50  --------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                     K D+ F VLHG  GEDG VQ + ++  +P    G
Sbjct: 68  AELCLVPGGCGRAIVVPDAGAPYEADKIDIIFPVLHGLHGEDGAVQGLAQVARVPLAGCG 127

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSL 139
           I  SA ++DK  +K++V+  G+    S+ + R  + +    +  +  P  IKP + GSS+
Sbjct: 128 IPGSANALDKDIAKRLVNEAGLSTAKSVTITREEVPAFSALEQALGLPIFIKPARQGSSV 187

Query: 140 GI--IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD--ASLDVTEIA-- 193
           G+  +V + D    +    S  + + D+LL E+++   E+ CGV+ D   +L V+     
Sbjct: 188 GVHKVVTEADYQAAM----SDGFIYDDKLLAEEFIQAREVECGVLEDEGGALFVSRAGEI 243

Query: 194 VPKSD--FYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
           VP     FYSY+ KY   + T + +PA++P  +  E++ +A  A + +GC  ++R DF F
Sbjct: 244 VPAESHCFYSYDAKYIDADGTEIKVPAELPEQVENEIRAIAAKAFRVLGCDSMARVDF-F 302

Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
               R++   EIN  PG T +S++ ++ A +G S+ E++  +V
Sbjct: 303 VTADRRIVLNEINTIPGFTDMSMYSKVMAVSGVSYPEIINRLV 345


>gi|85058877|ref|YP_454579.1| D-alanine-D-alanine ligase A [Sodalis glossinidius str.
           'morsitans']
 gi|123519734|sp|Q2NUK1|DDL_SODGM RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|84779397|dbj|BAE74174.1| D-alanine-D-alanine ligase A [Sodalis glossinidius str.
           'morsitans']
          Length = 366

 Score =  128 bits (322), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 101/343 (29%), Positives = 165/343 (48%), Gaps = 59/343 (17%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           +AVL GG S+E EVSL S      A++   + ++ I VD+     L              
Sbjct: 11  VAVLFGGQSTEHEVSLRSSMNVIRAIDRQKYDLTLIGVDKHGRWTLCDEQDYLLNADNPA 70

Query: 47  -------------------------AHLKP----DLAFNVLHGNFGEDGLVQAILELLEI 77
                                    A+ +P    D+AF+VLHG  GEDG VQ +L +L I
Sbjct: 71  AIRLAPARCYLAVVPGQSGAQLIDAANGQPFPSIDVAFSVLHGASGEDGSVQGLLRVLNI 130

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP-------PYVI 130
           PY    +L SA+ MDK  +K+V+   GVPV PS+ + R T D+   +         P  I
Sbjct: 131 PYAGPDVLGSAVCMDKDMTKRVLRDAGVPVTPSVTLLR-TGDAAPDVDAIIGQLGLPLFI 189

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190
           KP   GSS+G+  +         L  +  ++   ++L+EQ + G E+   V+G+ S +V+
Sbjct: 190 KPASQGSSVGVSKVTDRAGFAAALALAFRYDA--KVLVEQGISGREIETAVLGNDSPEVS 247

Query: 191 ---EIAVPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRS 246
              EI +   +FY+Y+ KY     +  V+PA +P  I   ++++A  A+ A+GC  ++R 
Sbjct: 248 VCGEI-LANDEFYAYDTKYLKGAQAGLVIPAALPAPIADALRQMAREAYLALGCSVMARV 306

Query: 247 DFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           DF       ++   E+N  PG T +S++P++   +G  +  L+
Sbjct: 307 DFFLTDQG-QILLNEVNTLPGFTSISMYPKLWEASGLDYPALV 348


>gi|294617801|ref|ZP_06697414.1| D-alanine--D-alanine ligase [Enterococcus faecium E1679]
 gi|291595941|gb|EFF27221.1| D-alanine--D-alanine ligase [Enterococcus faecium E1679]
          Length = 358

 Score =  128 bits (322), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 77/254 (30%), Positives = 136/254 (53%), Gaps = 16/254 (6%)

Query: 53  LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--S 110
           + F VLHG  GEDG +Q  LE L +PY  +G+L SA +MDK+ +K ++ + GVP  P   
Sbjct: 92  IVFPVLHGPNGEDGTIQGFLETLNMPYVGAGVLTSACAMDKIMTKYILQAAGVPQVPYVP 151

Query: 111 ILVNRFTMDSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
           +L N++  + + +          P  +KP   GSS+GI   +  + +   L  ++++ + 
Sbjct: 152 VLKNQWKENPKKVFDQCEGSLLYPMFVKPANMGSSVGITKAENREELQNAL--ATAYQYD 209

Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
            + ++EQ ++  E+   V+G+  +  T   E+ V    FY YE KY +      +PA++P
Sbjct: 210 SRAIVEQGIEAREIEVAVLGNEDVRTTLPGEV-VKDVAFYDYEAKYINNKIEMQIPAEVP 268

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280
            ++Y++ Q  A LA+  +G  G+SR DF F     ++F  E+N  PG T  S +P +   
Sbjct: 269 EEVYQKAQEYAKLAYTMLGGSGLSRCDF-FLTNKNELFLNELNSMPGFTEFSTYPLLWEN 327

Query: 281 AGYSFRELLLWMVE 294
            G  + +L+  +++
Sbjct: 328 MGLKYGDLIEELIQ 341


>gi|195941931|ref|ZP_03087313.1| D-alanine--D-alanine ligase (ddlA) [Borrelia burgdorferi 80a]
 gi|312148040|gb|ADQ30699.1| D-alanine--D-alanine ligase [Borrelia burgdorferi JD1]
          Length = 361

 Score =  128 bits (322), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 88/344 (25%), Positives = 172/344 (50%), Gaps = 50/344 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAG-FKVSQIDVDRSVGL--------------- 44
           + ++ GG+S E E+S  S  +   AL D   + +  + +D+  G+               
Sbjct: 5   LMLIFGGVSFEHEISCKSAYSIYLALLDLNKYNIYPVYIDKCTGVWYLLDSVSDPPKPIN 64

Query: 45  --VL---------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87
             VL                +L+ D+ F V+HG  GEDG +Q +L++++IP   +GI+ S
Sbjct: 65  TDVLPIVSLLPGFGIFSNNKNLEIDVVFPVVHGRTGEDGAIQGVLKVMDIPCVGAGIIGS 124

Query: 88  ALSMDKMRSKQVVSSCGVPVCPSILVNR--FTMDSQHL-------ISPPYVIKPLKGGSS 138
           A+S +K   K ++ S  +P+ P I   +  + +D + +       +  P ++KP   GSS
Sbjct: 125 AISSNKYFCKLLLKSFDIPLVPFIGFRQHDYFLDKEEIKRNVKEVLGYPVIVKPAVLGSS 184

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV---TEIAVP 195
           +GI V   +  I   + ++  ++    ++IE++++  E+ C ++G+  + +    E+ V 
Sbjct: 185 IGINVAYSENQIESFIKEALKYDL--TIVIEKFIEAREIECSIIGNEKMKIFSPGEVVVQ 242

Query: 196 KSDFYSYELKYSSLNSTHV---LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
              FY Y+ KYS +    +   +PA +  +    ++  AFLA++ +  RG++R DF  + 
Sbjct: 243 DFIFYDYDAKYSVIPGNSIIFNIPAHLETNQLLSIKEYAFLAYKNLELRGMARVDFFVEK 302

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            S  ++  EIN  PG T +S+F +M +  G  F++L+  +++ A
Sbjct: 303 KSGTIYLNEINTIPGFTDISMFAKMCSNDGLQFKDLVDNLIDYA 346


>gi|218249946|ref|YP_002374727.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase) [Borrelia
           burgdorferi ZS7]
 gi|226321518|ref|ZP_03797044.1| D-alanine--D-alanine ligase [Borrelia burgdorferi Bol26]
 gi|226729268|sp|B7J1D2|DDL_BORBZ RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|218165134|gb|ACK75195.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase) [Borrelia
           burgdorferi ZS7]
 gi|226232707|gb|EEH31460.1| D-alanine--D-alanine ligase [Borrelia burgdorferi Bol26]
          Length = 361

 Score =  128 bits (322), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 88/344 (25%), Positives = 172/344 (50%), Gaps = 50/344 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAG-FKVSQIDVDRSVGL--------------- 44
           + ++ GG+S E E+S  S  +   AL D   + +  + +D+  G+               
Sbjct: 5   LMLIFGGVSFEHEISCKSAYSIYLALLDLNKYNIYPVYIDKCTGVWYLLDSVSDPPKPIN 64

Query: 45  --VL---------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87
             VL                +L+ D+ F V+HG  GEDG +Q +L++++IP   +GI+ S
Sbjct: 65  TDVLPIVSLLPGFGIFSNNKNLEIDVVFPVVHGRTGEDGAIQGVLKVMDIPCVGAGIIGS 124

Query: 88  ALSMDKMRSKQVVSSCGVPVCPSILVNR--FTMDSQHL-------ISPPYVIKPLKGGSS 138
           A+S +K   K ++ S  +P+ P I   +  + +D + +       +  P ++KP   GSS
Sbjct: 125 AISSNKYFCKLLLKSFDIPLVPFIGFRQHDYFLDKEEIKKNVKEVLGYPVIVKPAVLGSS 184

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV---TEIAVP 195
           +GI V   +  I   + ++  ++    ++IE++++  E+ C ++G+  + +    E+ V 
Sbjct: 185 IGINVAYSENQIESFIKEALKYDL--TIVIEKFIEAREIECSIIGNEKMKIFSPGEVVVQ 242

Query: 196 KSDFYSYELKYSSLNSTHV---LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
              FY Y+ KYS +    +   +PA +  +    ++  AFLA++ +  RG++R DF  + 
Sbjct: 243 DFIFYDYDAKYSVIPGNSIIFNIPAHLETNQLLSIKEYAFLAYKNLELRGMARVDFFVEK 302

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            S  ++  EIN  PG T +S+F +M +  G  F++L+  +++ A
Sbjct: 303 KSGTIYLNEINTIPGFTDISMFAKMCSNDGLQFKDLVDNLIDYA 346


>gi|162448834|ref|YP_001611201.1| D-alanine-D-alanine ligase [Sorangium cellulosum 'So ce 56']
 gi|161159416|emb|CAN90721.1| D-alanine-D-alanine ligase [Sorangium cellulosum 'So ce 56']
          Length = 380

 Score =  128 bits (322), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 107/362 (29%), Positives = 167/362 (46%), Gaps = 76/362 (20%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           +AVL GG S+E E+SL S +    AL+   F+   I +D+S   +L              
Sbjct: 9   VAVLFGGRSAEHEISLLSARFVVEALDRDRFEPVLIGIDKSGRWLLQEEALLLGAARDPR 68

Query: 47  --------------AHLKP----------------DLAFNVLHGNFGEDGLVQAILELLE 76
                         AH  P                D+ F VLHG  GEDG VQ +LEL  
Sbjct: 69  LARLNEAMPEIALDAHPGPAGEATLTVPGGARAPIDVVFPVLHGPTGEDGCVQGLLELAG 128

Query: 77  IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH---------LISP- 126
           +PY  SG+L SA+ MDK   K+++    +P+ P + + R   D            L +P 
Sbjct: 129 VPYVGSGVLGSAVGMDKDVMKRLLREAEIPIVPHVTLRRAAWDRDRGACIDQIAALSAPG 188

Query: 127 -----PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI-ELTCG 180
                P  +KP   GSS+G+  +K    I   +  +  ++   +++ EQ ++G+ E+ C 
Sbjct: 189 SAGFGPIFVKPANLGSSVGVRRVKARSEIEAAVEHAFEFDL--KIVCEQGIEGVREIECS 246

Query: 181 VMGD----ASLDVTEIAVPKSD-FYSYELKYSSLNSTHVLPAKIPLDI----YKEVQRLA 231
           V+GD    AS+   EI V  +D FYSY  KY   +   +   +IP D+       VQ +A
Sbjct: 247 VLGDDDPIASVP-GEIVVGHADGFYSYAAKYIDADGATI---RIPADLSPAEANAVQLVA 302

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A +A+   G++R D    P  R ++  EIN  PG T +S++P++   +G   REL+  
Sbjct: 303 LRAFRALEASGMARVDLFLSP-DRALYVNEINTIPGFTAISMYPKLWEASGIPARELIER 361

Query: 292 MV 293
           ++
Sbjct: 362 LI 363


>gi|322375680|ref|ZP_08050192.1| D-alanine--D-alanine ligase [Streptococcus sp. C300]
 gi|321279388|gb|EFX56429.1| D-alanine--D-alanine ligase [Streptococcus sp. C300]
          Length = 347

 Score =  128 bits (322), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 99/331 (29%), Positives = 160/331 (48%), Gaps = 43/331 (12%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKV----------------------------- 33
           +L GG S+EREVS+ S ++   A+    F V                             
Sbjct: 7   LLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDFIKTQEFSQTPGQEDRLMT 66

Query: 34  -SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
            + ID D+ +     + +  + F VLHG  GEDG VQ  LE+L++PY    IL+S+L+MD
Sbjct: 67  NATIDWDKKIAPSSIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLAMD 126

Query: 93  KMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           K+ +K+V+ S G+   P +       V     + +  ++ P   KP   GSS+GI   K 
Sbjct: 127 KITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLTYPVFTKPSNMGSSVGI--SKS 184

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYE 203
           +    L      ++ +  ++L+EQ V+  E+  G++G+  +  T   E+ V    FY Y+
Sbjct: 185 ENQEELRQALELAFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVAFYDYD 243

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            KY     T  +PAKI  D+   ++  A  A +AIG  G+SR DF +     ++F  E+N
Sbjct: 244 AKYIDNKITMDIPAKISDDVVAVMRHNAETAFRAIGGLGLSRCDFFYTD-KGEIFLNELN 302

Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             PG T  S++P +    G S+ EL+  +V+
Sbjct: 303 TMPGFTQWSMYPLLWDNMGISYPELIEHLVD 333


>gi|263418597|sp|P0CB57|DDL_STRPN RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
          Length = 347

 Score =  128 bits (322), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 99/331 (29%), Positives = 161/331 (48%), Gaps = 43/331 (12%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQ--------------------------- 35
           +L GG S+EREVS+ S ++   A++   F V                             
Sbjct: 7   LLYGGRSAEREVSVLSAESVMRAVDYDRFTVKTFFISQSGDFIKTQEFSHAPGQEDRLMT 66

Query: 36  ---IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
              ID D+ V     + +  + F VLHG  GEDG VQ  LE+L++PY    IL+S+L+MD
Sbjct: 67  NETIDWDKKVAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLAMD 126

Query: 93  KMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           K+ +K+V+ S G+   P +       V     + +  ++ P   KP   GSS+GI   K 
Sbjct: 127 KITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLAYPVFTKPSNMGSSVGI--SKS 184

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYE 203
           +    L      ++ +  ++L+EQ V+  E+  G++G+  +  T   E+ V    FY Y+
Sbjct: 185 ENQEELRQALKLAFRYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVAFYDYD 243

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            KY     T  +PAKI  D+   +++ A  A +AIG  G+SR DF +     ++F  E+N
Sbjct: 244 AKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDFFYTDKG-EIFLNELN 302

Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             PG T  S++P +    G S+ +L+  +V+
Sbjct: 303 TMPGFTQWSMYPLLWDNMGISYPKLIERLVD 333


>gi|254967013|gb|ACT97542.1| putative D-alanine-D-alanine ligase [uncultured organism]
 gi|254967015|gb|ACT97543.1| putative D-alanine-D-alanine ligase [uncultured organism]
 gi|254967021|gb|ACT97546.1| putative D-alanine-D-alanine ligase [uncultured organism]
          Length = 354

 Score =  128 bits (322), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 89/261 (34%), Positives = 133/261 (50%), Gaps = 15/261 (5%)

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           S G     ++ D+ F VLHG  GEDG VQ +LEL  IPY   G+LASA+SMDK+ +K +V
Sbjct: 84  SEGDATKEVRVDVVFPVLHGLRGEDGTVQGLLELARIPYVGCGVLASAVSMDKLYTKLIV 143

Query: 101 SSCG------VPVCPSIL--VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152
            S G      VPV  S L  +N      ++ +S P  +KP   GSS G  V K D    L
Sbjct: 144 DSLGIRQADYVPVRRSQLQDMNSVIASVENKLSYPVFVKPSNAGSSRG--VNKADNREEL 201

Query: 153 DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK----SDFYSYELKYSS 208
               + +  H  ++L+E+ + G E+ C V G    +V    V +    ++FY ++ KY +
Sbjct: 202 VFALNEAAKHDRKILVEETIIGHEVECAVFGGGLQEVKASGVGEIMAAAEFYDFDAKYYN 261

Query: 209 LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268
             S  V+  ++P    ++V++ A    +A+   G+SR DF        VF  EIN  PG 
Sbjct: 262 AESKTVVDPELPGHAAEDVRKAAVEIFKAVDGYGLSRVDFFVTDAGEVVF-NEINTLPGF 320

Query: 269 TPVSIFPEMAAYAGYSFRELL 289
           T +S++P +    G S   L+
Sbjct: 321 TAISMYPMLWEARGISKSRLV 341


>gi|326539003|gb|ADZ87218.1| D-alanine--D-alanine ligase [Brucella melitensis M5-90]
          Length = 348

 Score =  128 bits (322), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 96/343 (27%), Positives = 168/343 (48%), Gaps = 55/343 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           + VL GG S+E +VS+ S     +AL+ A ++   + V R+   +L+             
Sbjct: 3   IVVLFGGRSAEHDVSVLSATNVMNALDPAKYEAVPVFVTRAGQWLLSRFVNGALEKLSSG 62

Query: 50  --------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                     K D+ F VLHG  GEDG VQ + ++  +P    G
Sbjct: 63  AELCLVPGGCGRAIVVPDAGAPYEADKIDIIFPVLHGLHGEDGAVQGLAQVARVPLAGCG 122

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSL 139
           I  SA ++DK  +K++V+  G+    S+ + R  + +    +  +  P  IKP + GSS+
Sbjct: 123 IPGSANALDKDIAKRLVNEAGLSTAKSVTITREEVPAFSALEQALGLPIFIKPARQGSSV 182

Query: 140 GI--IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD--ASLDVTEIA-- 193
           G+  +V + D    +    S  + + D+LL E+++   E+ CGV+ D   +L V+     
Sbjct: 183 GVHKVVTEADYQAAM----SDGFIYDDKLLAEEFIQAREVECGVLEDEGGALFVSRAGEI 238

Query: 194 VPKSD--FYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
           VP     FYSY+ KY   + T + +PA++P  +  E++ +A  A + +GC  ++R DF F
Sbjct: 239 VPAESHCFYSYDAKYIDADGTEIKVPAELPEQVENEIRAIAAKAFRVLGCDSMARVDF-F 297

Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
               R++   EIN  PG T +S++ ++ A +G S+ E++  +V
Sbjct: 298 VTADRRIVLNEINTIPGFTDMSMYSKVMAVSGVSYPEIINRLV 340


>gi|312958815|ref|ZP_07773334.1| D-alanylalanine synthetase [Pseudomonas fluorescens WH6]
 gi|311286585|gb|EFQ65147.1| D-alanylalanine synthetase [Pseudomonas fluorescens WH6]
          Length = 364

 Score =  128 bits (322), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 91/296 (30%), Positives = 152/296 (51%), Gaps = 30/296 (10%)

Query: 10  SEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ 69
           S RE+++  GKA    +E  G  V            L H+  D+ F ++HG  GEDG +Q
Sbjct: 72  SNRELAVVPGKANQQVVETTGQGV------------LEHI--DVIFPIVHGTLGEDGCLQ 117

Query: 70  AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ------HL 123
            +L + ++P+  S +L SA+ MDK  SK+++   G+ V P I + R            + 
Sbjct: 118 GLLRMADLPFVGSDVLGSAVCMDKDISKRLLRDAGIAVTPFITLTRRNAAHTSFEAAVNR 177

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           +  P  +KP   GSS+G+  +  +      +  +  ++  +++L+E  V G E+ C V+G
Sbjct: 178 LGLPMFVKPANQGSSVGVSKVGSEAEYHAAVELALGFD--EKVLLESAVQGREIECAVLG 235

Query: 184 D---ASLDVTEIAVPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIG 239
           +    +    EI V    FYSY+ KY    +   V+PA I  +  + ++RLA  A + +G
Sbjct: 236 NDNPIASGCGEIVVSNG-FYSYDSKYIDDQAAQVVVPADISHEASERIRRLALEAFEVLG 294

Query: 240 CRGISRSD-FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           C G++R D FL D    +V   EIN  PG T +S++P++   AG S+ EL+  ++E
Sbjct: 295 CAGLARVDVFLTD--DGEVLINEINSLPGFTRISMYPKLWQAAGMSYSELVSRLIE 348


>gi|307705390|ref|ZP_07642249.1| D-alanine-D-alanine ligase [Streptococcus mitis SK597]
 gi|307621053|gb|EFO00131.1| D-alanine-D-alanine ligase [Streptococcus mitis SK597]
          Length = 347

 Score =  128 bits (322), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 99/331 (29%), Positives = 160/331 (48%), Gaps = 43/331 (12%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKV----------------------------- 33
           +L GG S+EREVS+ S ++   A+    F V                             
Sbjct: 7   LLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDFIKTQEFSQTPGQEDRLMT 66

Query: 34  -SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
              ID D+ V     + +  + F VLHG  GEDG VQ  LE+L++PY    IL+S+L+MD
Sbjct: 67  NETIDWDKQVAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLAMD 126

Query: 93  KMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           K+ +K+V+ S G+   P +       V     + +  ++ P   KP   GSS+GI   K 
Sbjct: 127 KITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLTYPVFTKPSNMGSSVGI--SKS 184

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYE 203
           +    L      ++ +  ++L+EQ V+  E+  G++G+  +  T   E+ V    FY Y+
Sbjct: 185 ENQEELRQALELAFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVAFYDYD 243

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            KY     T  +PAKI  D+   +++ A  A +AIG  G+SR DF +     ++F  E+N
Sbjct: 244 AKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDFFYTDKG-EIFLNELN 302

Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             PG T  S++P +    G S+ +L+  +V+
Sbjct: 303 TMPGFTQWSMYPLLWDNMGISYPDLIERLVD 333


>gi|225552328|ref|ZP_03773268.1| D-alanine--D-alanine ligase [Borrelia sp. SV1]
 gi|225371326|gb|EEH00756.1| D-alanine--D-alanine ligase [Borrelia sp. SV1]
          Length = 361

 Score =  128 bits (322), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 88/344 (25%), Positives = 172/344 (50%), Gaps = 50/344 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAG-FKVSQIDVDRSVGL--------------- 44
           + ++ GG+S E E+S  S  +   AL D   + +  + +D+  G+               
Sbjct: 5   LMLIFGGVSFEHEISCKSAYSIYLALLDLNKYNIYPVYIDKCTGVWYLLDSVSNPPKPIN 64

Query: 45  --VL---------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87
             VL                +L+ D+ F V+HG  GEDG +Q +L++++IP   +GI+ S
Sbjct: 65  TDVLPIVSLLPGLGIFSNNKNLEIDVVFPVVHGRTGEDGAIQGVLKVMDIPCVGAGIIGS 124

Query: 88  ALSMDKMRSKQVVSSCGVPVCPSILVNR--FTMDSQHL-------ISPPYVIKPLKGGSS 138
           A+S +K   K ++ S  +P+ P I   +  + +D + +       +  P ++KP   GSS
Sbjct: 125 AISSNKYFCKLLLKSFDIPLVPFIGFRQHDYFLDKEEIKRNVKEVLGYPVIVKPAVLGSS 184

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV---TEIAVP 195
           +GI V   +  I   + ++  ++    ++IE++++  E+ C ++G+  + +    E+ V 
Sbjct: 185 IGINVAYSENQIESFIKEALRYDLA--IVIEKFIEAREIECSIIGNEKMKIFSPGEVVVQ 242

Query: 196 KSDFYSYELKYSSLNSTHV---LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
              FY Y+ KYS +    +   +PA +  +    ++  AFLA++ +  RG++R DF  + 
Sbjct: 243 DFIFYDYDAKYSVIPGNSIIFNIPAHLETNQLLSIKEYAFLAYKNLELRGMARVDFFVEK 302

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            S  ++  EIN  PG T +S+F +M +  G  F++L+  +++ A
Sbjct: 303 KSGTIYLNEINTIPGFTDISMFAKMCSNDGLQFKDLVDNLIDYA 346


>gi|168486961|ref|ZP_02711469.1| D-alanine--D-alanine ligase (D-alanylalanine
           synthetase)(D-Ala-D-Ala ligase) [Streptococcus
           pneumoniae CDC1087-00]
 gi|183570100|gb|EDT90628.1| D-alanine--D-alanine ligase (D-alanylalanine
           synthetase)(D-Ala-D-Ala ligase) [Streptococcus
           pneumoniae CDC1087-00]
          Length = 347

 Score =  128 bits (322), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 99/331 (29%), Positives = 161/331 (48%), Gaps = 43/331 (12%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQ--------------------------- 35
           +L GG S+EREVS+ S ++   A++   F V                             
Sbjct: 7   LLYGGRSAEREVSVLSAESVMRAVDYDRFTVKTFFISQSGDFIKTQEFSHAPGQEDRLMT 66

Query: 36  ---IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
              ID D+ V     + +  + F VLHG  GEDG VQ  LE+L++PY    IL+S+L+MD
Sbjct: 67  NETIDWDKKVAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLAMD 126

Query: 93  KMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           K+ +K+V+ S G+   P +       V     + +  ++ P   KP   GSS+GI   K 
Sbjct: 127 KITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLAYPVFTKPSNMGSSVGI--SKS 184

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYE 203
           +    L      ++ +  ++L+EQ V+  E+  G++G+  +  T   E+ V    FY Y+
Sbjct: 185 ENQEELRQALELAFRYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVAFYDYD 243

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            KY     T  +PAKI  D+   +++ A  A +AIG  G+SR DF +     ++F  E+N
Sbjct: 244 AKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDFFYTDKG-EIFLNELN 302

Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             PG T  S++P +    G S+ +L+  +V+
Sbjct: 303 TMPGFTQWSMYPLLWDNMGISYPKLIERLVD 333


>gi|157149874|ref|YP_001450726.1| D-alanyl-alanine synthetase A [Streptococcus gordonii str. Challis
           substr. CH1]
 gi|189083061|sp|A8AY66|DDL_STRGC RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|157074668|gb|ABV09351.1| D-Ala-D-Ala ligase [Streptococcus gordonii str. Challis substr.
           CH1]
          Length = 348

 Score =  128 bits (322), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 100/340 (29%), Positives = 167/340 (49%), Gaps = 46/340 (13%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQ--------------------------- 35
           +L GG S+EREVS+ S ++   A+    F V                             
Sbjct: 8   LLYGGRSAEREVSVLSAESVMRAINYDLFSVKTYFITKEGDFIKTQEFSSKPAEDVRLMT 67

Query: 36  ---IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
              +D+ R +     + +  + F VLHG  GEDG +Q  LE+L++PY    IL+S+L+MD
Sbjct: 68  NDTVDMSRKIKPSDIYEEGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNILSSSLAMD 127

Query: 93  KMRSKQVVSSCGVPVCPSI-LVNRFTMDS-----QHLISPPYVIKPLKGGSSLGIIVIKK 146
           K+ +K+V+ S G+   P + LV+   ++      +  +S P   KP   GSS+GI   K 
Sbjct: 128 KITTKRVLESAGIAQVPYVALVDGEDLEQKIQEIEEKLSYPVFTKPSNMGSSVGI--SKS 185

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYE 203
           D    L      ++ +  ++L+EQ V   E+  G++G+A +  +   E+ V    FY Y+
Sbjct: 186 DNQEELRASLDLAFKYDSRVLVEQGVTAREIEVGLLGNADVKSSLPGEV-VKDVAFYDYQ 244

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            KY     T  +PA++P  +   +++ A +A +AIG  G+SR DF +     +VF  E+N
Sbjct: 245 AKYIDNKITMAIPAQLPEGVVNTMRQNAEIAFRAIGGLGLSRCDFFYTE-DGQVFLNELN 303

Query: 264 VQPGMTPVSIFPEMAAYAGYSFREL---LLWMVEDASCLR 300
             PG T  S++P +    G ++ +L   L+ + E+A   R
Sbjct: 304 TMPGFTQWSMYPLLWENMGLAYPDLIEKLVALAEEAFAKR 343


>gi|237815687|ref|ZP_04594684.1| D-alanine--D-alanine ligase [Brucella abortus str. 2308 A]
 gi|237788985|gb|EEP63196.1| D-alanine--D-alanine ligase [Brucella abortus str. 2308 A]
          Length = 366

 Score =  128 bits (322), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 96/343 (27%), Positives = 168/343 (48%), Gaps = 55/343 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           + VL GG S+E +VS+ S     +AL+ A ++   + V R+   +L+             
Sbjct: 21  IVVLFGGRSAEHDVSVLSATNVMNALDPAKYEAVPVFVTRAGQWLLSRFVNGALEKPSSG 80

Query: 50  --------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                     K D+ F VLHG  GEDG VQ + ++  +P    G
Sbjct: 81  AELCLVPGGCGRAIVVPDAGAPYEADKIDIIFPVLHGLHGEDGAVQGLAQVARVPLAGCG 140

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSL 139
           I  SA ++DK  +K++V+  G+    S+ + R  + +    +  +  P  IKP + GSS+
Sbjct: 141 IPGSANALDKDIAKRLVNEAGLSTAKSVTITREEVPAFSALEQALGLPIFIKPARQGSSV 200

Query: 140 GI--IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD--ASLDVTEIA-- 193
           G+  +V + D    +    S  + + D+LL E+++   E+ CGV+ D   +L V+     
Sbjct: 201 GVHKVVTEADYQAAM----SDGFIYDDKLLAEEFIQAREVECGVLEDEGGALFVSRAGEI 256

Query: 194 VPKSD--FYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
           VP     FYSY+ KY   + T + +PA++P  +  E++ +A  A + +GC  ++R DF F
Sbjct: 257 VPAESHCFYSYDAKYIDADGTEIKVPAELPEQVENEIRAIAAKAFRVLGCDSMARVDF-F 315

Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
               R++   EIN  PG T +S++ ++ A +G S+ E++  +V
Sbjct: 316 VTADRRIVLNEINTIPGFTDMSMYSKVMAVSGVSYPEIINRLV 358


>gi|255531745|ref|YP_003092117.1| D-alanyl-alanine synthetase A [Pedobacter heparinus DSM 2366]
 gi|255344729|gb|ACU04055.1| D-alanine/D-alanine ligase [Pedobacter heparinus DSM 2366]
          Length = 328

 Score =  128 bits (322), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 94/327 (28%), Positives = 156/327 (47%), Gaps = 36/327 (11%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI-----------------DVDR--- 40
           +A+L GG + E  VS+ S    A  L+   F V +I                 +VDR   
Sbjct: 5   IALLTGGTTGEWVVSVKSAATIAQNLDADKFDVYKIMLTQQGWFYEPADSVKIEVDRNDF 64

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           S+ L    +K +  F  +HG+ GEDG +Q   ++L IPYT    L SA++M+K  +K +V
Sbjct: 65  SINLKGKKVKFEGVFIAIHGSPGEDGKLQGYFDMLGIPYTTCDALTSAVTMNKGYTKAIV 124

Query: 101 SSCG-VPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
                + +  S  + + T  S    +  +  PY +KP  GGSS+G+  +      P DL 
Sbjct: 125 DGIAELNIAKSAQIFKGTPYSLEQIKKTLKVPYFVKPNNGGSSIGMSKVNH----PDDLQ 180

Query: 156 QS--SSWNHGDQLLIEQYVDGIELTCGVMG-DASLDV---TEIAVPKSDFYSYELKYSSL 209
            +   ++    Q+LIE+++ G E T GV+  D  + V   TE+   K +F+ +E KY+  
Sbjct: 181 AAIDRAFKEDSQILIEEFISGREFTIGVVKLDGEITVLPATEVETAK-EFFDFEAKYTPG 239

Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
            +T   PA I  +  + V ++    +  + CRG+ R DF+ +      +++EIN  PG T
Sbjct: 240 VATETTPAPIRKETLERVTQIVKNVYLKLNCRGVVRIDFILNGDEGDFYFIEINTIPGQT 299

Query: 270 PVSIFPEMAAYAGYSFRELLLWMVEDA 296
             S  P+  A AG    +    ++ + 
Sbjct: 300 ATSFIPQQVAAAGMKLNDFYTKLIRET 326


>gi|222151984|ref|YP_002561144.1| D-alanine-D-alanine ligase [Macrococcus caseolyticus JCSC5402]
 gi|254767732|sp|B9E8D0|DDL_MACCJ RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|222121113|dbj|BAH18448.1| D-alanine-D-alanine ligase [Macrococcus caseolyticus JCSC5402]
          Length = 356

 Score =  128 bits (322), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 93/339 (27%), Positives = 164/339 (48%), Gaps = 52/339 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI----------------DVDRSVGL 44
           + ++ GG S+E +VSL + ++  +A++   + +  I                 ++ S  L
Sbjct: 6   ICIIYGGKSAEHDVSLLTAQSVINAMDKDKYAIDTIYITNDGEWLKGPEISETIEDSERL 65

Query: 45  VLAHLKP----------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
            L+H++                 D  F +LHG  GEDG +Q + E+L+IPY  +G+LA++
Sbjct: 66  RLSHIERLSISEMLNVSSAGKAYDAVFPLLHGPNGEDGTIQGLFEVLDIPYVGNGVLAAS 125

Query: 89  LSMDKMRSKQVVSSCGVPVCP--SILVNRFTMDSQHLIS-------PPYVIKPLKGGSSL 139
            SMDK+  KQ+ ++ G+P  P  S L + +     ++IS        P  +KP   GSS+
Sbjct: 126 TSMDKLVMKQLFATRGLPQLPYVSFLKSEYEAHKDNIISLVEGKLTYPVFVKPANLGSSV 185

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKS-- 197
           GI      +++   + ++  ++   +L+IEQ V+  E+   V+G+   D  E  +P    
Sbjct: 186 GISKCTDSETLIHGIEEALQFDR--KLVIEQGVNAREVEVAVLGN---DTPETTLPGEVV 240

Query: 198 ---DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
              DFY Y+ KY        +PA I  +I   ++ +A  A +A  C G+ R+DF      
Sbjct: 241 KDVDFYDYKSKYKDGKVRLQIPADISEEIQSALRDMAVEAFKATDCSGLVRADFFLTE-D 299

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            K++  E N  PG T  S++P +    G S+ EL+  ++
Sbjct: 300 DKIYINETNAMPGFTKFSMYPLLWENMGKSYSELITDLI 338


>gi|327461647|gb|EGF07978.1| D-alanine-D-alanine ligase [Streptococcus sanguinis SK1]
          Length = 353

 Score =  128 bits (322), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 102/340 (30%), Positives = 169/340 (49%), Gaps = 46/340 (13%)

Query: 3   VLMGGISSEREVSLSSGKACASAL-------------EDAGFKVSQ-------------- 35
           +L GG S+EREVS+ S ++   A+             +D  F  +Q              
Sbjct: 13  LLYGGRSAEREVSVLSAESVMRAVNYDRFSVRTYFITKDGDFIQTQEFEAKPAADEKLMT 72

Query: 36  ---IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
              +D+ R +     + K  + F VLHG  GEDG +Q  LE+L++PY    IL+S+L+MD
Sbjct: 73  NATVDMSRKIKPSDIYEKGVVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNILSSSLAMD 132

Query: 93  KMRSKQVVSSCGVPVCPSI-LVNRFTMDS-----QHLISPPYVIKPLKGGSSLGIIVIKK 146
           K+ +K+V+ S G+   P + LV+   ++      +  ++ P   KP   GSS+GI   K 
Sbjct: 133 KITTKRVLESAGIAQVPYVALVDGEDLEQKIQEIEEKLTYPVFTKPSNMGSSVGI--SKS 190

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYE 203
           +    L      ++ +  ++L+EQ V   E+  G++G+  +  T   E+ V    FY YE
Sbjct: 191 ENQAELRASLDLAFKYDSRVLVEQGVTAREIEVGLLGNVDVKSTLPGEV-VKDVAFYDYE 249

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            KY     T  +PAKIP ++   +++ A  A +A+G  G+SR DF +     +VF  E+N
Sbjct: 250 AKYIDNKITMDIPAKIPEEVVSLMRQNAEAAFRALGGLGLSRCDFFYAE-DGQVFLNELN 308

Query: 264 VQPGMTPVSIFPEMAAYAGYSFREL---LLWMVEDASCLR 300
             PG T  S++P +    G ++ +L   L+ + E+A   R
Sbjct: 309 TMPGFTQWSMYPLLWENMGLAYPDLIEKLVGLAEEAFAKR 348


>gi|227510155|ref|ZP_03940204.1| D-alanine--D-alanine ligase [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
 gi|227513084|ref|ZP_03943133.1| D-alanine--D-alanine ligase [Lactobacillus buchneri ATCC 11577]
 gi|227083659|gb|EEI18971.1| D-alanine--D-alanine ligase [Lactobacillus buchneri ATCC 11577]
 gi|227190360|gb|EEI70427.1| D-alanine--D-alanine ligase [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
          Length = 375

 Score =  128 bits (322), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 83/258 (32%), Positives = 145/258 (56%), Gaps = 15/258 (5%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC--- 108
           D+ F ++HGN GEDG +Q +L LL  PY  SG+L SA+S DK  +K+++   GV      
Sbjct: 97  DVFFPIIHGNLGEDGTIQGLLRLLNKPYVGSGVLGSAMSFDKDITKKILKLAGVATTRYE 156

Query: 109 --PSILVNRFTMDS-QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
               + V +++ DS    +     +KP   GSS+GI   K + S   D     ++ + ++
Sbjct: 157 LLTPLTVEKYSYDSLSAELGKILFVKPANQGSSVGI--HKVETSDDYDEAIRDAFRYDNK 214

Query: 166 LLIEQYVDG-IELTCGVMGDA---SLDVTEIAVPKSD-FYSYELKYSSLNSTHV-LPAKI 219
           +L+E+ ++G  EL   V+G+    +  V  I VP  D FY+Y+ K+   +     +P  I
Sbjct: 215 VLVEEAIEGPEELEISVLGNHHPIASKVGSIKVPADDAFYTYDNKFVDASQVKFDVPVDI 274

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279
           P  + KE+ ++A  +++A+G +G++R DFL    S   +  E+N  PG T +S++P++ A
Sbjct: 275 PEALSKELTKMALDSYRALGLKGMARIDFLVSQDSEP-YVSEVNTLPGFTNISLYPQLFA 333

Query: 280 YAGYSFRELLLWMVEDAS 297
            +G S+REL+  +++ A+
Sbjct: 334 ASGISYRELIDRLIQLAN 351


>gi|212716767|ref|ZP_03324895.1| hypothetical protein BIFCAT_01704 [Bifidobacterium catenulatum DSM
           16992]
 gi|212660471|gb|EEB21046.1| hypothetical protein BIFCAT_01704 [Bifidobacterium catenulatum DSM
           16992]
          Length = 384

 Score =  128 bits (322), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 79/278 (28%), Positives = 141/278 (50%), Gaps = 32/278 (11%)

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV 105
           L H+  D    VLHG +GEDG +Q + E++ +PY   G+LASA  MDK  +K ++++ G+
Sbjct: 106 LGHV--DAVLPVLHGPYGEDGTIQGLFEMMNVPYVGCGVLASAACMDKHYTKVLLAAAGI 163

Query: 106 PVCPSILVN--------RFTMDSQHLISP--------PYVIKPLKGGSSLGIIVIKKD-Q 148
           PV P I ++         F  ++  +++         P  +KP + GSS G+  ++ +  
Sbjct: 164 PVAPGITLDVRDYDAASEFAAEADEMLAAVQQAGLQYPLFVKPSRAGSSFGVTKVEHEGD 223

Query: 149 SIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP-----------KS 197
           +  L      + +H  ++L+EQ +D  E+ C V+   + +  + + P             
Sbjct: 224 AAELAAAVFEASHHDWRVLVEQGIDAREIECAVLCPKAGEAPQASWPGEIVLDKRAEGDD 283

Query: 198 DFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256
            FY ++ KY + +++HV +PA +P +    V+  A  A  A+   G+SR D  F     +
Sbjct: 284 QFYDFDSKYVNSDASHVEVPASLPEETLNRVRETAKKAFIAVDGAGLSRVD-TFVTADGE 342

Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           V   EIN  PG TP+S++P+     G S+ +L+  ++E
Sbjct: 343 VMVNEINTMPGFTPISMYPKAWEATGVSYTDLITTLIE 380


>gi|225351209|ref|ZP_03742232.1| hypothetical protein BIFPSEUDO_02799 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225158665|gb|EEG71907.1| hypothetical protein BIFPSEUDO_02799 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 384

 Score =  128 bits (322), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 79/278 (28%), Positives = 141/278 (50%), Gaps = 32/278 (11%)

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV 105
           L H+  D    VLHG +GEDG +Q + E++ +PY   G+LASA  MDK  +K ++++ G+
Sbjct: 106 LGHV--DAVLPVLHGPYGEDGTIQGLFEMMNVPYVGCGVLASAACMDKHYTKVLLAAAGI 163

Query: 106 PVCPSILVN--------RFTMDSQHLISP--------PYVIKPLKGGSSLGIIVIKKD-Q 148
           PV P I ++         F  ++  +++         P  +KP + GSS G+  ++ +  
Sbjct: 164 PVAPGITLDVRDYDAASEFAAEADEMLAAVQQAGLQYPLFVKPSRAGSSFGVTKVEHEGD 223

Query: 149 SIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP-----------KS 197
           +  L      + +H  ++L+EQ +D  E+ C V+   + +  + + P             
Sbjct: 224 AAELAAAVFEASHHDWRVLVEQGIDAREIECAVLCPKAGEAPQASWPGEIVLDKRAEGDD 283

Query: 198 DFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256
            FY ++ KY + +++HV +PA +P +    V+  A  A  A+   G+SR D  F     +
Sbjct: 284 QFYDFDSKYVNSDASHVEVPASLPEETLNRVRETAKKAFIAVDGAGLSRVD-TFVTADGE 342

Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           V   EIN  PG TP+S++P+     G S+ +L+  ++E
Sbjct: 343 VMVNEINTMPGFTPISMYPKAWEATGVSYTDLITTLIE 380


>gi|254524840|ref|ZP_05136895.1| D-alanine--D-alanine ligase A [Stenotrophomonas sp. SKA14]
 gi|219722431|gb|EED40956.1| D-alanine--D-alanine ligase A [Stenotrophomonas sp. SKA14]
          Length = 370

 Score =  128 bits (322), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 93/347 (26%), Positives = 165/347 (47%), Gaps = 57/347 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS------------------- 41
           + ++ GG SSE EVSL S K    AL+   F+   + +D+                    
Sbjct: 15  VGIIFGGRSSEHEVSLQSAKNILDALDRERFEPVLVGIDKQGQWHLSQPDTFLLNGDDPS 74

Query: 42  --------------VGLVLAHLKP----------DLAFNVLHGNFGEDGLVQAILELLEI 77
                          G   A L+P          D+   ++HG  GEDG +Q +L +  +
Sbjct: 75  RIALHPSGQSLAVLPGTEQAQLRPSDAAATLGQIDVVLPIVHGPLGEDGALQGLLRMANL 134

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF---TMDSQHLISP---PYVIK 131
           P+  S +L SA++MDK  +K+++   G+ V P + + R     +D + +I+    P  +K
Sbjct: 135 PFVGSPVLGSAVAMDKDVTKRLLRDAGLQVAPWLCIRRHQAAAVDVETVIAQLGLPLFVK 194

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT- 190
           P   GSS+G+  +K+       L  +  ++H  ++L+E  V G E+ C V+G+A    + 
Sbjct: 195 PANQGSSVGVSKVKEAAGFAQALELALRYDH--KVLVESAVVGREIECAVLGNAQPQASL 252

Query: 191 --EIAVPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
             E+ V   +FY+Y+ KY +      V+PA I       +Q++A  A+QA+ C G++R D
Sbjct: 253 CGEVVV-HDEFYAYDTKYINEGGADVVVPADIDAATQARIQQIALQAYQALECAGMARVD 311

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            +F      +   E+N  PG T +S++P++   +G  +  L+  ++E
Sbjct: 312 -VFLTADGDIVINEVNTLPGFTRISMYPKLWGASGVDYTTLITRLIE 357


>gi|62290178|ref|YP_221971.1| D-alanyl-alanine synthetase A [Brucella abortus bv. 1 str. 9-941]
 gi|82700100|ref|YP_414674.1| D-alanyl-alanine synthetase A [Brucella melitensis biovar Abortus
           2308]
 gi|189024413|ref|YP_001935181.1| D-alanyl-alanine synthetase A [Brucella abortus S19]
 gi|254689483|ref|ZP_05152737.1| D-alanine--D-alanine ligase/VANA/B/C [Brucella abortus bv. 6 str.
           870]
 gi|254693970|ref|ZP_05155798.1| D-alanine--D-alanine ligase/VANA/B/C [Brucella abortus bv. 3 str.
           Tulya]
 gi|254697620|ref|ZP_05159448.1| D-alanine--D-alanine ligase/VANA/B/C [Brucella abortus bv. 2 str.
           86/8/59]
 gi|254730511|ref|ZP_05189089.1| D-alanine--D-alanine ligase/VANA/B/C [Brucella abortus bv. 4 str.
           292]
 gi|256257731|ref|ZP_05463267.1| D-alanine--D-alanine ligase/VANA/B/C [Brucella abortus bv. 9 str.
           C68]
 gi|260546722|ref|ZP_05822461.1| D-alanine-D-alanine ligase/VANA/B/C [Brucella abortus NCTC 8038]
 gi|260755006|ref|ZP_05867354.1| D-Ala-D-Ala ligase A [Brucella abortus bv. 6 str. 870]
 gi|260758222|ref|ZP_05870570.1| D-Ala-D-Ala ligase A [Brucella abortus bv. 4 str. 292]
 gi|260762049|ref|ZP_05874392.1| D-Ala-D-Ala ligase A [Brucella abortus bv. 2 str. 86/8/59]
 gi|260884017|ref|ZP_05895631.1| D-alanine-D-alanine ligase A [Brucella abortus bv. 9 str. C68]
 gi|261214261|ref|ZP_05928542.1| D-Ala-D-Ala ligase A [Brucella abortus bv. 3 str. Tulya]
 gi|297248570|ref|ZP_06932288.1| D-alanine-D-alanine ligase A [Brucella abortus bv. 5 str. B3196]
 gi|62196310|gb|AAX74610.1| DdlA, D-alanine--D-alanine ligase A [Brucella abortus bv. 1 str.
           9-941]
 gi|82616201|emb|CAJ11247.1| D-alanine--D-alanine ligase/VANA/B/C:D-alanine--D-alanine ligase
           [Brucella melitensis biovar Abortus 2308]
 gi|189019985|gb|ACD72707.1| D-alanine--D-alanine ligase/VANA/B/C [Brucella abortus S19]
 gi|260095772|gb|EEW79649.1| D-alanine-D-alanine ligase/VANA/B/C [Brucella abortus NCTC 8038]
 gi|260668540|gb|EEX55480.1| D-Ala-D-Ala ligase A [Brucella abortus bv. 4 str. 292]
 gi|260672481|gb|EEX59302.1| D-Ala-D-Ala ligase A [Brucella abortus bv. 2 str. 86/8/59]
 gi|260675114|gb|EEX61935.1| D-Ala-D-Ala ligase A [Brucella abortus bv. 6 str. 870]
 gi|260873545|gb|EEX80614.1| D-alanine-D-alanine ligase A [Brucella abortus bv. 9 str. C68]
 gi|260915868|gb|EEX82729.1| D-Ala-D-Ala ligase A [Brucella abortus bv. 3 str. Tulya]
 gi|297175739|gb|EFH35086.1| D-alanine-D-alanine ligase A [Brucella abortus bv. 5 str. B3196]
          Length = 353

 Score =  128 bits (322), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 96/343 (27%), Positives = 168/343 (48%), Gaps = 55/343 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           + VL GG S+E +VS+ S     +AL+ A ++   + V R+   +L+             
Sbjct: 8   IVVLFGGRSAEHDVSVLSATNVMNALDPAKYEAVPVFVTRAGQWLLSRFVNGALEKPSSG 67

Query: 50  --------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                     K D+ F VLHG  GEDG VQ + ++  +P    G
Sbjct: 68  AELCLVPGGCGRAIVVPDAGAPYEADKIDIIFPVLHGLHGEDGAVQGLAQVARVPLAGCG 127

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSL 139
           I  SA ++DK  +K++V+  G+    S+ + R  + +    +  +  P  IKP + GSS+
Sbjct: 128 IPGSANALDKDIAKRLVNEAGLSTAKSVTITREEVPAFSALEQALGLPIFIKPARQGSSV 187

Query: 140 GI--IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD--ASLDVTEIA-- 193
           G+  +V + D    +    S  + + D+LL E+++   E+ CGV+ D   +L V+     
Sbjct: 188 GVHKVVTEADYQAAM----SDGFIYDDKLLAEEFIQAREVECGVLEDEGGALFVSRAGEI 243

Query: 194 VPKSD--FYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
           VP     FYSY+ KY   + T + +PA++P  +  E++ +A  A + +GC  ++R DF F
Sbjct: 244 VPAESHCFYSYDAKYIDADGTEIKVPAELPEQVENEIRAIAAKAFRVLGCDSMARVDF-F 302

Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
               R++   EIN  PG T +S++ ++ A +G S+ E++  +V
Sbjct: 303 VTADRRIVLNEINTIPGFTDMSMYSKVMAVSGVSYPEIINRLV 345


>gi|322392710|ref|ZP_08066170.1| D-alanine-D-alanine ligase [Streptococcus peroris ATCC 700780]
 gi|321144702|gb|EFX40103.1| D-alanine-D-alanine ligase [Streptococcus peroris ATCC 700780]
          Length = 347

 Score =  128 bits (321), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 99/331 (29%), Positives = 159/331 (48%), Gaps = 43/331 (12%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQ--------------------------- 35
           +L GG S+ER+VS+ S ++   A+    F V                             
Sbjct: 7   LLYGGRSAERKVSVLSAESVMRAVNYDHFTVKTFFISQSGDFIKTQEFDQTPSQDERLMT 66

Query: 36  ---IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
              ID D+ +     + +  + F VLHG  GEDG VQ  LE+L++PY    IL+S+L+MD
Sbjct: 67  NETIDWDQKIAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLAMD 126

Query: 93  KMRSKQVVSSCGVPVCPSI-------LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145
           K+ +K+V+ S G+   P +       LV++   + +  ++ P   KP   GSS+GI   K
Sbjct: 127 KITTKRVLESAGIAQVPYVAIVEGDDLVSKIA-EVEEKLNYPVFTKPSNMGSSVGI--SK 183

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG--DASLDVTEIAVPKSDFYSYE 203
            +    L      ++ +  ++L+EQ V+  E+  G++G  D    +    V    FY YE
Sbjct: 184 SENQAELRQALDLAFKYDSRVLVEQGVNAREIEVGLLGNYDVKSSLPGEVVKDVAFYDYE 243

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            KY     T  +PAK+  D+   +++ A  A +AIG  G+SR DF +     +VF  E+N
Sbjct: 244 AKYIDNKITMDIPAKLSDDVIATMRKNAETAFRAIGGLGLSRCDFFYTD-KGEVFLNELN 302

Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             PG T  S++P +    G  + EL+  +VE
Sbjct: 303 TMPGFTQWSMYPLLWDNMGIPYPELIERLVE 333


>gi|284928951|ref|YP_003421473.1| D-alanine--D-alanine ligase [cyanobacterium UCYN-A]
 gi|284809410|gb|ADB95115.1| D-alanine--D-alanine ligase [cyanobacterium UCYN-A]
          Length = 350

 Score =  128 bits (321), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 104/348 (29%), Positives = 172/348 (49%), Gaps = 56/348 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAG----FKVSQIDVDRS--------------- 41
           + +L GG S E  VS++S +A   AL+       + V  I + R+               
Sbjct: 5   IGLLFGGASEEHIVSINSARAILQALQIGNNLCKYNVIPIYIQRNGVWISGKIAEQVLQT 64

Query: 42  -VGLVLAHLKP----------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84
              L L  LK                 D+ F VLHG  GEDG +Q +L++++ P+  + +
Sbjct: 65  KQALPLVLLKKEEKFQLWQFPTEVNQIDVWFPVLHGPNGEDGTIQGLLKMMQTPFVGTSV 124

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILV------------NRFTMDSQHLISPPYVIKP 132
           L SA+ MDK+  K + S  G P    + +            ++   D +  +  P  IKP
Sbjct: 125 LGSAIGMDKIVMKTIFSQAGFPQVKYLTLEYSKLFSNAQYYSQLCNDIRTNLGYPCFIKP 184

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD----ASLD 188
              GSS+G+  +     + + L  ++S++  ++++IE+ +   EL CGV+G+    AS+ 
Sbjct: 185 ANLGSSVGVSKVSSHDELEIALKNAASYD--NRIIIEEGIIARELECGVLGNDIPKASV- 241

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           V EI   +SDFY Y+ KY   +S   +PA++P  I +++Q++A  A   I  RG+SR DF
Sbjct: 242 VGEITF-ESDFYDYKAKYKDTSSKIHIPAQLPNHIIEKIQQMAINAFTTINGRGLSRVDF 300

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            +   ++K+F  EIN  PG T  S++PE+    G  F EL+  ++E A
Sbjct: 301 FYIEGTQKIFINEINSFPGFTESSMYPELWIKTGLEFHELVDKLIELA 348


>gi|254719320|ref|ZP_05181131.1| D-alanine--D-alanine ligase A [Brucella sp. 83/13]
 gi|256369692|ref|YP_003107202.1| D-alanine--D-alanine ligase A [Brucella microti CCM 4915]
 gi|265984322|ref|ZP_06097057.1| D-alanine-D-alanine ligase A [Brucella sp. 83/13]
 gi|306839095|ref|ZP_07471912.1| D-alanine--D-alanine ligase [Brucella sp. NF 2653]
 gi|255999854|gb|ACU48253.1| D-alanine--D-alanine ligase A [Brucella microti CCM 4915]
 gi|264662914|gb|EEZ33175.1| D-alanine-D-alanine ligase A [Brucella sp. 83/13]
 gi|306405642|gb|EFM61904.1| D-alanine--D-alanine ligase [Brucella sp. NF 2653]
          Length = 353

 Score =  128 bits (321), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 95/343 (27%), Positives = 167/343 (48%), Gaps = 55/343 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           + VL GG S+E +VS+ S     +AL+ A ++   + V R+   +L+             
Sbjct: 8   IVVLFGGRSAEHDVSVLSATNVMNALDPAKYEAVPVFVTRAGQWLLSRFVNGALEKPSSG 67

Query: 50  --------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                     K D+ F VLHG  GEDG VQ + ++  +P    G
Sbjct: 68  AELCLVPGGCGRAIVVPDAGAPYEADKIDIIFPVLHGLHGEDGAVQGLAQVARVPLAGCG 127

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSL 139
           I  SA ++DK  +K++ +  G+    S+ + R  + +    +  +  P  IKP + GSS+
Sbjct: 128 IPGSANALDKDIAKRLFNEAGLSTAKSVTITREEVPAFSALEQALGLPIFIKPARQGSSV 187

Query: 140 GI--IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD--ASLDVTEIA-- 193
           G+  +V + D    +    S  + + D+LL E+++   E+ CGV+ D   +L V+     
Sbjct: 188 GVHKVVTEADYQAAM----SDGFTYDDKLLAEEFIQAREVECGVLEDEGGALFVSRAGEI 243

Query: 194 VPKSD--FYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
           VP     FYSY+ KY   + T + +PA++P  +  E++ +A  A + +GC  ++R DF F
Sbjct: 244 VPAESHCFYSYDAKYIDADGTEIKVPAELPEQVENEIRAIAAKAFRVLGCDSMARVDF-F 302

Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
               R++   EIN  PG T +S++ ++ A +G S+ E++  +V
Sbjct: 303 VTADRRIVLNEINTIPGFTDMSMYSKVMAVSGVSYPEIINRLV 345


>gi|190359179|sp|Q031X8|DDL_LACLS RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
          Length = 349

 Score =  128 bits (321), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 102/334 (30%), Positives = 158/334 (47%), Gaps = 48/334 (14%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------LK 50
           +L GG S+EREVS+ S ++   A+  + F V    + +    +               L 
Sbjct: 8   LLYGGRSAEREVSVLSAESVMRAVNYSRFIVKTYFITKGGEFIKTQEFTDTPAEEEKLLT 67

Query: 51  PDLA------------------FNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
            DLA                  F VLHG  GEDG +Q  LE+L + Y    IL+++ +MD
Sbjct: 68  NDLAESYPKISPAAIYEKDAVVFPVLHGPMGEDGSIQGFLEILRLAYVGPNILSASSTMD 127

Query: 93  KMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP--------PYVIKPLKGGSSLGIIVI 144
           K+ +K V  + GVP  P   V  F  ++Q  I+         P  +KP   GSS+GI   
Sbjct: 128 KLLAKHVFEAVGVPQVP--YVAAFADENQAEIAQEVVEKLEFPVFVKPANMGSSVGI--S 183

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI----AVPKSDFY 200
           K D    L    S ++ + ++++IEQ VD  E+ C V+G+ S DV+       V    FY
Sbjct: 184 KVDDLADLQPALSEAYKYDNRVVIEQGVDAREIECAVLGNNS-DVSATLPGEVVKDVGFY 242

Query: 201 SYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260
            Y  KY        +PAK+  D+ +++Q  A  A++A+   G+SR DF F      V+  
Sbjct: 243 DYNSKYIDNKIQMDIPAKVSADLAQKIQEYAKKAYKAVNGAGLSRCDF-FVTKDGNVYLN 301

Query: 261 EINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           E+N  PG T  S++P +    G S+ +L+  +V+
Sbjct: 302 EVNAIPGFTQWSMYPLLWENMGLSYSDLIEKLVD 335


>gi|5912563|emb|CAB56200.1| D-alanine-D-alanine ligase [Prochlorococcus marinus subsp. pastoris
           str. PCC 9511]
          Length = 310

 Score =  128 bits (321), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 82/261 (31%), Positives = 139/261 (53%), Gaps = 16/261 (6%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP----- 106
           D+ F +LHG  GEDG +  +L+  + P    GIL SAL MDK+  K++ S   +P     
Sbjct: 53  DIWFPLLHGVNGEDGAIHGLLKFTQKPIVGGGILGSALGMDKILMKKIFSHLEIPQVNYL 112

Query: 107 ------VCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160
                 +    + N  +++    +  P  +KP   GSSLGI   K    I +  LQ + W
Sbjct: 113 DIQNQDLSDDKVKNNLSVEIIEKLKLPVFVKPANSGSSLGISKAKTRSEI-IKALQKA-W 170

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK--SDFYSYELKYSSLNSTHVLPAK 218
               +++IE+ +D  EL CG++G+  L  +EI      +D+Y Y+ KYS +++  ++PA 
Sbjct: 171 EIDSRIVIEEGLDVRELECGIIGNLKLTASEIGEVSYSTDWYDYDSKYS-MDNQIIIPAD 229

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278
           I   I ++++ +A  + +A+   G +R DF  + +S K+F  EIN  PG T  S+FP + 
Sbjct: 230 IDSQISEQIKDIAIRSCRALNIYGFARVDFFLEKISNKIFLNEINTIPGFTSKSMFPMLW 289

Query: 279 AYAGYSFRELLLWMVEDASCL 299
             +G +  +L+  +V+ +S L
Sbjct: 290 NASGLNIDQLVAKLVDISSDL 310


>gi|256826798|ref|YP_003150757.1| ATP-grasp enzyme, D-alanine-D-alanine ligase [Cryptobacterium
           curtum DSM 15641]
 gi|256582941|gb|ACU94075.1| ATP-grasp enzyme, D-alanine-D-alanine ligase [Cryptobacterium
           curtum DSM 15641]
          Length = 327

 Score =  128 bits (321), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 98/324 (30%), Positives = 162/324 (50%), Gaps = 42/324 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG S ER +SL SGK    ALE+AG KV  +D  + +   L   +PD+A++ LHG
Sbjct: 3   VAVLMGGASFERAISLDSGKRVCEALEEAGHKVVPLDTTKDLVPTLRSERPDVAYSALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDK------MRS----KQVVSSCGVPVCPS 110
             GEDG +Q++LE LEIP+  S       + +K      +RS    +  +SS   P    
Sbjct: 63  KHGEDGTIQSLLEFLEIPFVGSPAAVCHDTWNKATIPLALRSWAAGQGGMSSASYP--QG 120

Query: 111 ILVNRFTMDSQHLISP------------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS 158
           + + R  M      +             P  +KP  GGS+LG+  ++  + +   LL + 
Sbjct: 121 VCLARDAMKDMGAATAIDLFEQRIPGGYPLCVKPACGGSALGVHRVECVEDMGAALLDAL 180

Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLN---S 211
           +++  D++L+++++DG+E+   ++G+     +L   EI V +   Y  + + S       
Sbjct: 181 TYD--DEVLVQEWIDGVEVAVSILGNGWDAHALPPVEIIV-RDGLYDTDARLSDEAVDYY 237

Query: 212 THVLPAKIPLD------IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           T V P+ +  +      I  E++R +   ++A G   + R D ++D    +V  LE+NV 
Sbjct: 238 TPVRPSSLSNNEADAQAIRAEIERASLEVYRAYGVCDMGRVDLIWDGAQARV--LEVNVS 295

Query: 266 PGMTPVSIFPEMAAYAGYSFRELL 289
           PGMT  S+FP     AG S   +L
Sbjct: 296 PGMTERSLFPVACDAAGLSMTAVL 319


>gi|47567482|ref|ZP_00238194.1| D-alanine--D-alanine ligase [Bacillus cereus G9241]
 gi|47555884|gb|EAL14223.1| D-alanine--D-alanine ligase [Bacillus cereus G9241]
          Length = 361

 Score =  128 bits (321), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 94/338 (27%), Positives = 160/338 (47%), Gaps = 52/338 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------DRSVGLVL----- 46
           + +L GG S+E +VSL +  A   AL    F++  I +         +R  G V      
Sbjct: 6   LGLLYGGKSAEHQVSLQTALAAIKALNQDKFEIHPIYITEQGQWVRGERIEGEVTDVEVL 65

Query: 47  ---------------AHLKP---------DLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
                            + P         D+ F +LHG  GEDG VQ +LEL+ IPY  +
Sbjct: 66  KMSGAENAISPLSLSTEIIPSANAEENAIDVIFPLLHGPNGEDGTVQGLLELMNIPYVGN 125

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH---------LISPPYVIKPL 133
           G+LASA  MDK+  K + +  G+         R   +  H         ++  P  +KP 
Sbjct: 126 GVLASAAGMDKVVMKNIFAEAGLKQAKYASFIRSAWEKDHETAYEKVEEVLGYPCFVKPA 185

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
             GSS+GI   K  + +     ++  ++   ++++E+ + G E+  GV+G+     + + 
Sbjct: 186 NLGSSVGINKCKNREELENAFEEAFQFDR--KIIVEENIVGREVEVGVLGNDEPKCSVVG 243

Query: 194 --VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
             VPK DFY Y+ KY   ++  ++PA++  +    ++R A +A Q++   G++R+DF F 
Sbjct: 244 EIVPKKDFYDYKSKYIDGDTALIIPAEMTEEESNVIKRDAIVAFQSLDGAGLTRADF-FL 302

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
               +V+  E+N  PG TP S+FP +  + G  + EL+
Sbjct: 303 TKDGEVYINEVNTMPGFTPFSMFPLLWQHTGLPYPELI 340


>gi|317131747|ref|YP_004091061.1| D-alanine/D-alanine ligase [Ethanoligenens harbinense YUAN-3]
 gi|315469726|gb|ADU26330.1| D-alanine/D-alanine ligase [Ethanoligenens harbinense YUAN-3]
          Length = 354

 Score =  128 bits (321), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 99/343 (28%), Positives = 161/343 (46%), Gaps = 58/343 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSV------------------ 42
           +AVL GG+SSE  VSL S  +  + +    F V  I + R                    
Sbjct: 6   VAVLFGGMSSEHAVSLVSATSVIANIPRDRFDVVMIGITRDGEWRLFEGDVEKLAGSGWE 65

Query: 43  -----------------GLV-------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIP 78
                            G+V       +  ++ D+ F VLHG  GEDG VQ +L L  IP
Sbjct: 66  SDPSNRPAFIAPDSRVHGIVALSPDGRIETIRLDVVFPVLHGLNGEDGTVQGLLTLARIP 125

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCP--SILVNRFTMDSQHLISP-------PYV 129
           +   G+ ASA+ MDK  +K +  +  +P     ++ V+    + + ++         P  
Sbjct: 126 FVGCGVTASAVCMDKAITKALCDTYQIPQAKWETVRVSDLKDNGKAVVERLEAHLGYPLF 185

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           +KP   GSS+G I    D+      +++++  H  +L+ E+ V+G E+ C V+G+    V
Sbjct: 186 VKPANAGSSVG-ISKAADRETLYKAIETAA-THDRKLVFEEAVNGREIECAVLGNEEPVV 243

Query: 190 T---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRS 246
           +   EI  P ++FY Y  KY +  +  V+PA +P D+ + V++ A    + +GCRG++R 
Sbjct: 244 SCCGEIK-PCNEFYDYNAKYLAGRTELVIPASLPKDVSERVRQTAMRVFRLLGCRGLTRM 302

Query: 247 DFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           DF F      V   E N  PG T +S++P++    G S+ ELL
Sbjct: 303 DF-FALEDGTVLLNEPNTIPGFTSISMYPKLFEAGGISYGELL 344


>gi|116511200|ref|YP_808416.1| D-alanyl-alanine synthetase A [Lactococcus lactis subsp. cremoris
           SK11]
 gi|116106854|gb|ABJ71994.1| D-alanine--D-alanine ligase [Lactococcus lactis subsp. cremoris
           SK11]
          Length = 367

 Score =  128 bits (321), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 102/334 (30%), Positives = 158/334 (47%), Gaps = 48/334 (14%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------LK 50
           +L GG S+EREVS+ S ++   A+  + F V    + +    +               L 
Sbjct: 26  LLYGGRSAEREVSVLSAESVMRAVNYSRFIVKTYFITKGGEFIKTQEFTDTPAEEEKLLT 85

Query: 51  PDLA------------------FNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
            DLA                  F VLHG  GEDG +Q  LE+L + Y    IL+++ +MD
Sbjct: 86  NDLAESYPKISPAAIYEKDAVVFPVLHGPMGEDGSIQGFLEILRLAYVGPNILSASSTMD 145

Query: 93  KMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP--------PYVIKPLKGGSSLGIIVI 144
           K+ +K V  + GVP  P   V  F  ++Q  I+         P  +KP   GSS+GI   
Sbjct: 146 KLLAKHVFEAVGVPQVP--YVAAFADENQAEIAQEVVEKLEFPVFVKPANMGSSVGI--S 201

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI----AVPKSDFY 200
           K D    L    S ++ + ++++IEQ VD  E+ C V+G+ S DV+       V    FY
Sbjct: 202 KVDDLADLQPALSEAYKYDNRVVIEQGVDAREIECAVLGNNS-DVSATLPGEVVKDVGFY 260

Query: 201 SYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260
            Y  KY        +PAK+  D+ +++Q  A  A++A+   G+SR DF F      V+  
Sbjct: 261 DYNSKYIDNKIQMDIPAKVSADLAQKIQEYAKKAYKAVNGAGLSRCDF-FVTKDGNVYLN 319

Query: 261 EINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           E+N  PG T  S++P +    G S+ +L+  +V+
Sbjct: 320 EVNAIPGFTQWSMYPLLWENMGLSYSDLIEKLVD 353


>gi|225017225|ref|ZP_03706417.1| hypothetical protein CLOSTMETH_01151 [Clostridium methylpentosum
           DSM 5476]
 gi|224950000|gb|EEG31209.1| hypothetical protein CLOSTMETH_01151 [Clostridium methylpentosum
           DSM 5476]
          Length = 321

 Score =  128 bits (321), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 88/290 (30%), Positives = 147/290 (50%), Gaps = 31/290 (10%)

Query: 22  CASALEDAGFKVSQIDVDRSVGLVL--------AHLKPDLAFNVLHGNFGEDGLVQAILE 73
           CASA+         I  DR+ G +L        + L+ D  F VLHG  GEDG +Q +L+
Sbjct: 40  CASAI---------ISPDRTHGGILKILEDGSTSLLRIDCVFPVLHGRNGEDGTIQGLLK 90

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH--------LIS 125
           L  IP+     L+SAL MDK  +  V+ + G+       + +  +   +         +S
Sbjct: 91  LAGIPFVGCDTLSSALCMDKAMTHTVLDAAGIRTANWDQIQKTELPQLNEKCEQFIDKLS 150

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            P  +KP   GSS+GI      +S+   +    ++ H  ++++E+ + G E+ C V+G+ 
Sbjct: 151 LPIFVKPANAGSSVGITKATDFESLREGI--KFAFTHDSKVIVEEMLSGKEVECAVLGND 208

Query: 186 SLDVTEIA--VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           +   + +   +P ++FY Y+ KY S +S   +PA +     + VQ  A  A+QA+GC G+
Sbjct: 209 APQASALGQIIPCNEFYDYDAKYQS-DSELKIPADLDEVTTRRVQETAVRAYQALGCSGL 267

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +R DF F      V+  E N  PG T +S++P++  Y+G  + ELL  +V
Sbjct: 268 ARVDF-FVSEDGTVYLNEPNTLPGFTSISMYPKLWEYSGLPYSELLERLV 316


>gi|169829744|ref|YP_001699902.1| D-alanine--D-alanine ligase B [Lysinibacillus sphaericus C3-41]
 gi|168994232|gb|ACA41772.1| D-alanine--D-alanine ligase B [Lysinibacillus sphaericus C3-41]
          Length = 364

 Score =  128 bits (321), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 99/340 (29%), Positives = 165/340 (48%), Gaps = 58/340 (17%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI------------DVDRSVG----- 43
           + +L GG S+E EVSLS+ +A   AL    ++V  I             +++ V      
Sbjct: 10  IGLLYGGKSAEHEVSLSTARAVTGALNFEEYEVYPIFITSEGEWRRGNRLEKPVSTIEEL 69

Query: 44  ----------------LVLAH---LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84
                           L+  H   ++ D+ F +LHG  GEDG VQ +LE+L +PY  +G+
Sbjct: 70  QFGDNTTILENNITDFLIDEHGNAVQFDVVFPLLHGTNGEDGTVQGLLEVLNLPYVGNGV 129

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVNR--FTMDSQHLISP-------PYVIKPLKG 135
           LAS+  MDK+  KQ+    G+P  P     R  +  + Q +I         P  +KP   
Sbjct: 130 LASSAGMDKVVMKQLFEIAGLPQVPYTYFIRSEWKNEQQTIIERCEKRLTWPMFVKPANL 189

Query: 136 GSSLGI-IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194
           GSS+GI     +D+ I        +  +  ++++EQ +   E+   V+G+   D  E++V
Sbjct: 190 GSSVGISRATNRDELIK---AIEVALQYDRKIVVEQGIIAREIELAVLGN---DYPEVSV 243

Query: 195 PK-----SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
           P      ++FY Y+ KY   ++  ++PA++P +    ++ LA  A +AI   G+ R+DF 
Sbjct: 244 PGEIKPVTEFYDYDSKYKDGSTALIIPAELPEETESSLKELAKRAFKAIDGSGLVRADF- 302

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           F      V+  E+N  PG TPVS++P +  +   S+ EL+
Sbjct: 303 FVTADNSVYINEVNTLPGFTPVSMYPLLWQHTNVSYPELI 342


>gi|307709606|ref|ZP_07646059.1| D-alanine--D-alanine ligase [Streptococcus mitis SK564]
 gi|307619642|gb|EFN98765.1| D-alanine--D-alanine ligase [Streptococcus mitis SK564]
          Length = 347

 Score =  128 bits (321), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 100/331 (30%), Positives = 162/331 (48%), Gaps = 43/331 (12%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKV----------------------------- 33
           +L GG S+EREVS+ S ++  SA+    F V                             
Sbjct: 7   LLYGGRSAEREVSVLSAESVMSAVNYDRFTVKTFFISQSGDFIKTQEFSQTPGQEDRLMT 66

Query: 34  -SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
            + ID D+ V     + +  + F VLHG  GEDG VQ  LE+L++PY    IL+S+L+MD
Sbjct: 67  NATIDWDKKVVPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLAMD 126

Query: 93  KMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           K+ +K+V+ S G+   P +       V     + +  ++ P   KP   GSS+GI   K 
Sbjct: 127 KITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLTYPVFTKPSNMGSSVGI--SKS 184

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYE 203
           +    L      ++ +  ++L+EQ V+  E+  G++G+  +  T   E+ V    FY Y+
Sbjct: 185 ENQEELRQALELAFRYDSRVLVEQGVNAREIEVGLLGNYYVKSTLPGEV-VKDVAFYDYD 243

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            KY     T  +PAKI  D+   +++ A  A +AIG  G+SR DF +     ++F  E+N
Sbjct: 244 AKYIDNKITMDIPAKIGDDVVAVMRQNAETAFRAIGGLGLSRCDFFYTD-KGEIFLNELN 302

Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             PG T  S++P +    G S+ +L+  +V+
Sbjct: 303 TMPGFTQWSMYPLLWDNMGISYPDLIERLVD 333


>gi|306844174|ref|ZP_07476767.1| D-alanine--D-alanine ligase [Brucella sp. BO1]
 gi|306275449|gb|EFM57186.1| D-alanine--D-alanine ligase [Brucella sp. BO1]
          Length = 353

 Score =  128 bits (321), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 95/343 (27%), Positives = 167/343 (48%), Gaps = 55/343 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           + VL GG S+E +VS+ S     +AL+ A ++   + V R+   +L+             
Sbjct: 8   IVVLFGGRSAEHDVSVLSATNVMNALDPAKYEAVPVFVTRAGQWLLSRFVNGALEKPSSG 67

Query: 50  --------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                     K D+ F VLHG  GEDG VQ + ++  +P    G
Sbjct: 68  AELCLVPGGCGRAIVVPDAGAPYEANKIDIIFPVLHGLHGEDGAVQGLAQVARVPLAGCG 127

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSL 139
           I  SA ++DK  +K++ +  G+    S+ + R  + +    +  +  P  IKP + GSS+
Sbjct: 128 IPGSANALDKDIAKRLFNEAGLSTAKSVTITREEVPAFSALEQALGLPIFIKPARQGSSV 187

Query: 140 GI--IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD--ASLDVTEIA-- 193
           G+  +V + D    +    S  + + D+LL E+++   E+ CGV+ D   +L V+     
Sbjct: 188 GVHKVVTEADYQAAM----SDGFTYDDKLLAEEFIQAREVECGVLEDEGGALFVSRAGEI 243

Query: 194 VPKSD--FYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
           VP     FYSY+ KY   + T + +PA++P  +  E++ +A  A + +GC  ++R DF F
Sbjct: 244 VPAESHCFYSYDAKYIDADGTEIKVPAELPEQVENEIRAIAAKAFRVLGCDSMARVDF-F 302

Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
               R++   EIN  PG T +S++ ++ A +G S+ E++  +V
Sbjct: 303 VTADRRIVLNEINTIPGFTDMSMYSKVMAVSGVSYPEIINRLV 345


>gi|52078991|ref|YP_077782.1| D-alanyl-alanine synthetase A [Bacillus licheniformis ATCC 14580]
 gi|52784363|ref|YP_090192.1| D-alanyl-alanine synthetase A [Bacillus licheniformis ATCC 14580]
 gi|81667017|sp|Q65N65|DDL_BACLD RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|52002202|gb|AAU22144.1| D-alanyl-D-alanine ligase A [Bacillus licheniformis ATCC 14580]
 gi|52346865|gb|AAU39499.1| Ddl [Bacillus licheniformis ATCC 14580]
          Length = 361

 Score =  128 bits (321), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 81/253 (32%), Positives = 131/253 (51%), Gaps = 14/253 (5%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-- 109
           D+ F +LHG  GEDG +Q +LELL +PY  +G+LAS+  MDK+  K + +  G+      
Sbjct: 95  DVVFPLLHGPNGEDGTIQGMLELLNVPYVGNGVLASSAGMDKVVMKHLFAQAGLDQAKYV 154

Query: 110 SILVNRFTMDSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
           S L   ++   +   +        P  +KP   GSS+GI   +  +   LD     ++ +
Sbjct: 155 SFLKKTWSQSKEECYAQVEGELGYPCFVKPANLGSSVGISKCRSREE--LDQAFELAFQY 212

Query: 163 GDQLLIEQYVDGIELTCGVMGDAS--LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
             ++++E+ V G E+  GV+G+      V     PK DFY Y+ KY   ++  ++PA + 
Sbjct: 213 DRKIVVEEGVIGREIELGVLGNDEPVCSVAGEIAPKKDFYDYKAKYEDGDTDLIIPASLT 272

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280
            D Y+ ++ +A  A QAI   G+ R+DF      R V   E+N  PG TP S+FP +   
Sbjct: 273 EDEYETMRSMAVKAFQAIDGSGLVRADFFLTNEGR-VLINEVNTMPGFTPFSMFPLLWKQ 331

Query: 281 AGYSFRELLLWMV 293
           +G  + EL+  +V
Sbjct: 332 SGVEYAELIEKLV 344


>gi|254967017|gb|ACT97544.1| putative D-alanine-D-alanine ligase [uncultured organism]
          Length = 354

 Score =  128 bits (321), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 89/261 (34%), Positives = 132/261 (50%), Gaps = 15/261 (5%)

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           S G     ++ D+ F VLHG  GEDG VQ +LEL  IPY   G+LASA+SMDK+ +K +V
Sbjct: 84  SEGDATKEVRVDVVFPVLHGLRGEDGTVQGLLELARIPYVGCGVLASAVSMDKLYTKLIV 143

Query: 101 SSCG------VPVCPSIL--VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152
            S G      VPV  S L  +N      ++ +S P  +KP   GSS G  V K D    L
Sbjct: 144 DSLGIRQADYVPVRRSQLQDMNSVIASVENKLSYPVFVKPSNAGSSRG--VNKADNREEL 201

Query: 153 DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK----SDFYSYELKYSS 208
               + +  H  ++L+E+ + G E+ C V G    +V    V +    ++FY ++ KY +
Sbjct: 202 VFALNEAAKHDRKILVEETIIGHEVECAVFGGGLQEVKASGVGEIMAAAEFYDFDAKYYN 261

Query: 209 LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268
             S  V+  ++P    ++V + A    +A+   G+SR DF        VF  EIN  PG 
Sbjct: 262 AESKTVVDPELPGHAAEDVSKAAVEIFKAVDGYGLSRVDFFVTDAGEVVF-NEINTLPGF 320

Query: 269 TPVSIFPEMAAYAGYSFRELL 289
           T +S++P +    G S   L+
Sbjct: 321 TAISMYPMLWEARGISKSRLV 341


>gi|325103814|ref|YP_004273468.1| D-alanine/D-alanine ligase [Pedobacter saltans DSM 12145]
 gi|324972662|gb|ADY51646.1| D-alanine/D-alanine ligase [Pedobacter saltans DSM 12145]
          Length = 330

 Score =  128 bits (321), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 89/327 (27%), Positives = 167/327 (51%), Gaps = 37/327 (11%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------------------- 40
           +A++ GG + E  +SL+S K     L+ + + V QI +D                     
Sbjct: 5   IALVAGGFTGESVISLNSTKTVYKNLDRSKYNVYQIIIDSEKWYHEDEQGESHLIDKNDF 64

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           S+ +    +  D AF ++HG  GEDG +Q   ++L IPYT      SA++M+K  +KQ+V
Sbjct: 65  SINIKGTKVTFDCAFIIIHGIPGEDGKLQGYFDMLNIPYTSCDATTSAITMNKGYTKQIV 124

Query: 101 SSC-GVPVCPSILVNRFTMDS------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153
           S+   + +  S+ +  F++DS      +  +  P  +KP  GGSS+G+   K ++   LD
Sbjct: 125 SAVPDLNIAKSVQL--FSLDSYKQAEIEQNLGLPLFVKPNNGGSSIGM--SKVNEWDDLD 180

Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCG---VMGDAS-LDVTEIAVPKSDFYSYELKYSSL 209
                ++  G ++LIE+++ G E T G   V G+ + L +TEI   K +F+ +E KY++ 
Sbjct: 181 KAVQRAFAEGSEVLIEEFISGREFTVGAYTVDGEVNVLPITEIITTK-EFFDFEAKYTAG 239

Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
            +  V PA++  ++ + +  +    +  + C+G+ R DF+    ++  +++E+N  PG +
Sbjct: 240 LTNEVTPAELDNELVERIGEIIKRTYIQLNCKGMVRIDFILKD-NKDFYFIEVNTIPGQS 298

Query: 270 PVSIFPEMAAYAGYSFRELLLWMVEDA 296
             SI P+    AG +       ++++A
Sbjct: 299 ENSIIPQQVRAAGLTLTYFYGNLIDEA 325


>gi|319744789|gb|EFV97129.1| D-alanine-D-alanine ligase [Streptococcus agalactiae ATCC 13813]
          Length = 348

 Score =  128 bits (321), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 102/336 (30%), Positives = 164/336 (48%), Gaps = 51/336 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQ------------------------- 35
           + +L GG S+EREVS+ S ++   A+    F V                           
Sbjct: 6   LILLYGGRSAEREVSVLSAESVMRAINYDKFFVKTYFITQVGQFIKTQEFDEMPSSDEKL 65

Query: 36  -----IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
                +D+D+ V     +    + F VLHG  GEDG +Q  LE+L +PY  + IL+S+++
Sbjct: 66  MTNQTVDLDKMVRPSDIYDDDAIVFPVLHGPMGEDGSIQGFLEVLRMPYVGTNILSSSVA 125

Query: 91  MDKMRSKQVVSSCGVPVCPSILVNRFTMDS-QHLI-------SPPYVIKPLKGGSSLGII 142
           MDK+ +KQV+++ GVP         F  D+ +H I       S P  +KP   GSS+GI 
Sbjct: 126 MDKITTKQVLATVGVPQVA--YQTYFEGDNLEHAIKLSLETLSFPIFVKPANMGSSVGIS 183

Query: 143 VIKKDQSI--PLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKS 197
               + S+   +DL    +  +  ++LIEQ V   E+  G++G+  +  T   E+ V   
Sbjct: 184 KATDESSLRSAIDL----ALKYDSRILIEQGVTAREIEVGILGNNDVKTTFPGEV-VKDV 238

Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
           DFY Y+ KY     T  +PAK+     + +++ A  A +AIG  G+SR DF F     ++
Sbjct: 239 DFYDYDAKYIDNKITMDIPAKVDEATMEAMRQYASKAFKAIGACGLSRCDF-FLTKDGQI 297

Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           F  E+N  PG T  S++P +    G ++ +L+  +V
Sbjct: 298 FLNELNTMPGFTQWSMYPLLWENMGLTYSDLIEKLV 333


>gi|6634594|emb|CAB64487.1| D-ala,D-ala ligase [Streptococcus pneumoniae]
          Length = 347

 Score =  128 bits (321), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 99/331 (29%), Positives = 161/331 (48%), Gaps = 43/331 (12%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKV----------------------------- 33
           +L GG S+EREVS+ S ++   A+    F V                             
Sbjct: 7   LLYGGRSAEREVSVLSAESVMRAVNYNRFTVKTFFISQSGDFIKTQEFSQTPGQEDRLMT 66

Query: 34  -SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
            + ID D+ V     + +  + F VLHG  GEDG VQ  LE+L++PY    IL+S+L+MD
Sbjct: 67  NATIDWDKQVVPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLAMD 126

Query: 93  KMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           K+ +K+V+ S G+   P +       V     + +  ++ P   KP   GSS+GI   K 
Sbjct: 127 KITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLAYPVFTKPSNMGSSVGI--SKS 184

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYE 203
           +    L      ++ +  ++L+EQ V+  E+  G++G+  +  T   E+ V    FY Y+
Sbjct: 185 ENQEELRQALKLAFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVAFYDYD 243

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            KY     T  +PAKI  D+   +++ A  A +AIG  G+SR DF +     ++F  E+N
Sbjct: 244 AKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDFFYTD-KGEIFLNELN 302

Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             PG T  S++P +    G S+ +L+  +V+
Sbjct: 303 TMPGFTQWSMYPLLWDNMGISYSDLIEHLVD 333


>gi|322373496|ref|ZP_08048032.1| D-alanine--D-alanine ligase [Streptococcus sp. C150]
 gi|321278538|gb|EFX55607.1| D-alanine--D-alanine ligase [Streptococcus sp. C150]
          Length = 348

 Score =  128 bits (321), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 95/330 (28%), Positives = 162/330 (49%), Gaps = 43/330 (13%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH-------------- 48
           +L GG S+EREVS+ S ++   A++ + F+V    + +S   +                 
Sbjct: 8   LLYGGRSAEREVSVLSAESVMRAVDYSAFEVKTYFITQSGDFIKTQEFTETPGDDEKLMT 67

Query: 49  ---------LKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
                    +KP        + F VLHG  GEDG +Q  LE L++PY  + +L+S+L+MD
Sbjct: 68  NDTVVASQAIKPSDIYEEGAVVFPVLHGPMGEDGSIQGFLETLKLPYVGTNVLSSSLAMD 127

Query: 93  KMRSKQVVSSCGVP-VCPSILVNRFTMDS------QHLISPPYVIKPLKGGSSLGIIVIK 145
           K+ +K ++   GVP V  ++ +    +++      Q L  P +V KP   GSS+GI   K
Sbjct: 128 KITTKHILEVVGVPQVAYTVFIEGEDLEAAVARTVQKLTFPVFV-KPANMGSSVGI--SK 184

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD--FYSYE 203
            +    L      +  +  ++LIEQ V   E+  G++G+ ++  TE      D  FY Y+
Sbjct: 185 AENEAELRAAIDLALKYDSRILIEQGVVAREIEVGILGNTTVKTTEPGEVVKDVAFYDYQ 244

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            KY     T  +PA +P ++  +++  A  A +A+G  G++R DF F      ++  E+N
Sbjct: 245 AKYIDNKITMDIPAHVPAEVMTQMRAYAAKAFRALGGCGLARCDF-FLAEDGTIYLNELN 303

Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
             PG T  S++P +    G S+ +L+  +V
Sbjct: 304 TMPGFTQWSMYPLLWENMGLSYTDLIKELV 333


>gi|319648705|ref|ZP_08002916.1| D-alanine-D-alanine ligase [Bacillus sp. BT1B_CT2]
 gi|317389124|gb|EFV69940.1| D-alanine-D-alanine ligase [Bacillus sp. BT1B_CT2]
          Length = 355

 Score =  128 bits (321), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 81/253 (32%), Positives = 131/253 (51%), Gaps = 14/253 (5%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-- 109
           D+ F +LHG  GEDG +Q +LELL +PY  +G+LAS+  MDK+  K + +  G+      
Sbjct: 89  DVVFPLLHGPNGEDGTIQGMLELLNVPYVGNGVLASSAGMDKVVMKHLFAQAGLDQAKYV 148

Query: 110 SILVNRFTMDSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
           S L   ++   +   +        P  +KP   GSS+GI   +  +   LD     ++ +
Sbjct: 149 SFLKKTWSQSKEECYAQVEGELGYPCFVKPANLGSSVGISKCRSREE--LDQAFELAFQY 206

Query: 163 GDQLLIEQYVDGIELTCGVMGDAS--LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
             ++++E+ V G E+  GV+G+      V     PK DFY Y+ KY   ++  ++PA + 
Sbjct: 207 DRKIVVEEGVIGREIELGVLGNDEPVCSVAGEIAPKKDFYDYKAKYEDGDTDLIIPASLT 266

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280
            D Y+ ++ +A  A QAI   G+ R+DF      R V   E+N  PG TP S+FP +   
Sbjct: 267 EDEYETMRSMAVKAFQAIDGSGLVRADFFLTNEGR-VLINEVNTMPGFTPFSMFPLLWKQ 325

Query: 281 AGYSFRELLLWMV 293
           +G  + EL+  +V
Sbjct: 326 SGVEYAELIEKLV 338


>gi|256847995|ref|ZP_05553439.1| D-alanine-D-alanine ligase [Lactobacillus coleohominis 101-4-CHN]
 gi|256715055|gb|EEU30032.1| D-alanine-D-alanine ligase [Lactobacillus coleohominis 101-4-CHN]
          Length = 377

 Score =  128 bits (321), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 86/256 (33%), Positives = 141/256 (55%), Gaps = 17/256 (6%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D  F V+HGN GEDG VQ +  LL+ PY  SGI ASALS DK  +K+++   GV   P +
Sbjct: 96  DFFFPVIHGNLGEDGTVQGLFRLLKKPYVGSGITASALSFDKDYTKRILDLAGVRNTPYV 155

Query: 112 LV---NRFTMDSQHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
           LV   NR   D Q +   +     +KP K GSS+GI  ++ +Q     L  +  +++  +
Sbjct: 156 LVTPENRDQYDWQAIENELGTTVFVKPAKQGSSVGIHKVENEQEYQAALDDAFIYDY--K 213

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTEIA---VPKSD-FYSYELKYSSLNS-THVLPAKI 219
           +L+EQ ++   E+   ++G+     +++    VPK D FY YE K+   +     LP  +
Sbjct: 214 VLVEQAINNPREVEISILGNEKPIASKLGGVRVPKGDAFYDYENKFVDASGVVFDLPVIL 273

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL-EINVQPGMTPVSIFPEMA 278
           P  + +E+  +A  A++A+  +G++R DFL D     V +L E N  PG T +S++P+M 
Sbjct: 274 PEKLTREITEMALKAYKALDMKGLARIDFLVD--ENDVPYLGEPNTLPGFTNISLYPQMW 331

Query: 279 AYAGYSFRELLLWMVE 294
           + +G  +  L+  ++E
Sbjct: 332 SVSGIDYSTLIDKLIE 347


>gi|323691440|ref|ZP_08105712.1| D-alanine-D-alanine ligase [Clostridium symbiosum WAL-14673]
 gi|323504486|gb|EGB20276.1| D-alanine-D-alanine ligase [Clostridium symbiosum WAL-14673]
          Length = 355

 Score =  128 bits (321), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 85/267 (31%), Positives = 134/267 (50%), Gaps = 18/267 (6%)

Query: 43  GLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS 102
           G  +  +K D AF VLHG +GEDG +Q + EL ++PY   G+LASA+SMDK  +K +   
Sbjct: 86  GAGIKKIKVDGAFPVLHGLYGEDGTIQGLFELAKLPYVGCGVLASAVSMDKFFTKIIADR 145

Query: 103 CGV------PVCPSILVNRFTMDS-----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
            GV      PV    +     M       +   + P  IKP   GSS G+   +  + + 
Sbjct: 146 VGVRQAAYEPVMKEEIAGTEGMAEAVKRVEARFAYPVFIKPSNAGSSRGVSKAENREQLT 205

Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK----SDFYSYELKYS 207
             L +++   H  ++L+E+ + G E+ C V G+    V    V +    + FY +E KY 
Sbjct: 206 EGLTEAA--RHDRKILVEETIVGHEIECAVFGNGKEPVIASGVGEVLAAAQFYDFEAKYF 263

Query: 208 SLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPG 267
           +  S  V+  ++P D  + V+R A    +A+   G++R DF F      V + EIN  PG
Sbjct: 264 NAESRTVVNPELPGDSAERVRRAAVEIFKAVDGYGLARVDF-FVTKDGDVVFNEINTMPG 322

Query: 268 MTPVSIFPEMAAYAGYSFRELLLWMVE 294
            T +S++P +   AG S  EL+  ++E
Sbjct: 323 FTAISMYPMLFEAAGISKTELVGKLIE 349


>gi|332199700|gb|EGJ13775.1| D-alanine--D-alanine ligase family protein [Streptococcus
           pneumoniae GA41317]
          Length = 347

 Score =  128 bits (321), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 99/331 (29%), Positives = 160/331 (48%), Gaps = 43/331 (12%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQ--------------------------- 35
           +L GG S+EREVS+ S ++   A+    F V                             
Sbjct: 7   LLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDSIKTQEFSHAPGQEDRLMT 66

Query: 36  ---IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
              ID D+ V     + +  + F VLHG  GEDG VQ  LE+L++PY    IL+S+L+MD
Sbjct: 67  NETIDWDKKVAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLAMD 126

Query: 93  KMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           K+ +K+V+ S G+   P +       V     + +  ++ P   KP   GSS+GI   K 
Sbjct: 127 KITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLAYPVFTKPSNMGSSVGI--SKS 184

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYE 203
           +    L      ++ +  ++L+EQ V+  E+  G++G+  +  T   E+ V    FY Y+
Sbjct: 185 ENQEELRQALKLAFRYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVAFYDYD 243

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            KY     T  +PAKI  D+   +++ A  A +AIG  G+SR DF +     ++F  E+N
Sbjct: 244 AKYIDNKVTMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDFFYTDKG-EIFLNELN 302

Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             PG T  S++P +    G S+ +L+  +V+
Sbjct: 303 TMPGFTQWSMYPLLWDNMGISYPKLIERLVD 333


>gi|223889230|ref|ZP_03623818.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase) [Borrelia
           burgdorferi 64b]
 gi|223885263|gb|EEF56365.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase) [Borrelia
           burgdorferi 64b]
          Length = 361

 Score =  128 bits (321), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 88/344 (25%), Positives = 172/344 (50%), Gaps = 50/344 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAG-FKVSQIDVDRSVGL--------------- 44
           + ++ GG+S E E+S  S  +   AL D   + +  + +D+  G+               
Sbjct: 5   LMLIFGGVSFEHEISCKSAYSIYLALLDLNKYYIYPVYIDKCTGVWYLLDSVSDPPKPIN 64

Query: 45  --VL---------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87
             VL                +L+ D+ F V+HG  GEDG +Q +L++++IP   +GI+ S
Sbjct: 65  TDVLPIVSLLPGFGIFSNNKNLEIDVVFPVVHGRTGEDGAIQGVLKVMDIPCVGAGIIGS 124

Query: 88  ALSMDKMRSKQVVSSCGVPVCPSILVNR--FTMDSQHL-------ISPPYVIKPLKGGSS 138
           A+S +K   K ++ S  +P+ P I   +  + +D + +       +  P ++KP   GSS
Sbjct: 125 AISSNKYFCKLLLKSFDIPLVPFIGFRQHDYFLDKEEIKRNVKETLGYPVIVKPAVLGSS 184

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV---TEIAVP 195
           +GI V   +  I   + ++  ++    ++IE++++  E+ C ++G+  + +    E+ V 
Sbjct: 185 IGINVAYSENQIESFIKEALKYDL--TIVIEKFIEAREIECSIIGNEKMKIFSPGEVVVQ 242

Query: 196 KSDFYSYELKYSSLNSTHV---LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
              FY Y+ KYS +    +   +PA +  +    ++  AFLA++ +  RG++R DF  + 
Sbjct: 243 DFIFYDYDAKYSVIPGNSIIFNIPAHLETNQLLSIKEYAFLAYKNLELRGMARVDFFVEK 302

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            S  ++  EIN  PG T +S+F +M +  G  F++L+  +++ A
Sbjct: 303 KSGTIYLNEINTIPGFTDISMFAKMCSNDGLQFKDLVDNLIDYA 346


>gi|258593040|emb|CBE69351.1| putative D-alanine--D-alanine ligase A (D-alanylalanine synthetase
           A) (D-Ala-D-Ala ligase A) [NC10 bacterium 'Dutch
           sediment']
          Length = 436

 Score =  127 bits (320), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 88/266 (33%), Positives = 139/266 (52%), Gaps = 25/266 (9%)

Query: 48  HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV 107
           H   D+AF V+HG  GEDG +Q + EL  +PY  +G+ ASA+ MDK+ SK V    G+PV
Sbjct: 144 HPTIDVAFPVIHGTHGEDGTIQGLCELANLPYVGAGVAASAVGMDKIISKLVFQGAGLPV 203

Query: 108 CPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS 158
              I V R  +           + ++S P V+KP   GSS+GI V     ++    L   
Sbjct: 204 VEGIGVTRRELLEDEAAVVQALERILSYPVVVKPAVAGSSVGIGV--AHDAVEALSLAKR 261

Query: 159 SWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIA--VPKSDFYSYELKY-------SS 208
           +     ++L+E+ V   IE+ CGV+G+ +L V+E    +   +   Y  KY       S+
Sbjct: 262 AMRFSCRVLVERAVQQRIEVQCGVIGNHALTVSECEELISSGEVVGYRDKYPENKKPGSA 321

Query: 209 LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268
             +  ++PA+IP  +  E++ +A  A ++I  RGISR DFL D  + K +  EIN  PG 
Sbjct: 322 DLAPSIIPARIPQALSDEIRSIAAAAFKSIDSRGISRVDFLVDSAAMKPYVNEINTMPGS 381

Query: 269 TPVSIFPEMAAYAGYSFRELLLWMVE 294
             ++++      +G    EL++ +VE
Sbjct: 382 LSLTLWER----SGVKPAELIVRLVE 403


>gi|224532828|ref|ZP_03673443.1| D-alanine--D-alanine ligase [Borrelia burgdorferi WI91-23]
 gi|224512217|gb|EEF82603.1| D-alanine--D-alanine ligase [Borrelia burgdorferi WI91-23]
          Length = 361

 Score =  127 bits (320), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 88/344 (25%), Positives = 172/344 (50%), Gaps = 50/344 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAG-FKVSQIDVDRSVGL--------------- 44
           + ++ GG+S E E+S  S  +   AL D   + +  + +D+  G+               
Sbjct: 5   LMLIFGGVSFEHEISCKSAYSIYLALLDLNKYYIYPVYIDKCTGVWYLLDSVSDPPKPIN 64

Query: 45  --VL---------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87
             VL                +L+ D+ F V+HG  GEDG +Q +L++++IP   +GI+ S
Sbjct: 65  TDVLPIVSLLPGFGIFSNNKNLEIDVVFPVVHGRTGEDGAIQGVLKVMDIPCVGAGIIGS 124

Query: 88  ALSMDKMRSKQVVSSCGVPVCPSILVNR--FTMDSQHL-------ISPPYVIKPLKGGSS 138
           A+S +K   K ++ S  +P+ P I   +  + +D + +       +  P ++KP   GSS
Sbjct: 125 AISSNKYFCKLLLKSFDIPLVPFIGFRQHDYFLDKEEIKRNVKEALGYPVIVKPAVLGSS 184

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV---TEIAVP 195
           +GI V   +  I   + ++  ++    ++IE++++  E+ C ++G+  + +    E+ V 
Sbjct: 185 IGINVAYSENQIESFIKEALKYDL--TIVIEKFIEAREIECSIIGNEKMKIFSPGEVVVQ 242

Query: 196 KSDFYSYELKYSSLNSTHV---LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
              FY Y+ KYS +    +   +PA +  +    ++  AFLA++ +  RG++R DF  + 
Sbjct: 243 DFIFYDYDAKYSVIPGNSIIFNIPAHLETNQLLSIKEYAFLAYKNLELRGMARVDFFVEK 302

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            S  ++  EIN  PG T +S+F +M +  G  F++L+  +++ A
Sbjct: 303 KSGTIYLNEINTIPGFTDISMFAKMCSNDGLQFKDLVDNLIDYA 346


>gi|325690163|gb|EGD32167.1| D-alanine-D-alanine ligase [Streptococcus sanguinis SK115]
          Length = 353

 Score =  127 bits (320), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 101/340 (29%), Positives = 168/340 (49%), Gaps = 46/340 (13%)

Query: 3   VLMGGISSEREVSLSSGKACASAL-------------EDAGFKVSQ-------------- 35
           +L GG S+EREVS+ S ++   A+             +D  F  +Q              
Sbjct: 13  LLYGGRSAEREVSVLSAESVMRAVNYDRFSVKTYFITKDGDFIQTQEFEAKPAADEKLMT 72

Query: 36  ---IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
              +D+ R +     + +  + F VLHG  GEDG +Q  LE+L++PY    IL+S L+MD
Sbjct: 73  NATVDMSRKIKPSDIYEEEAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNILSSGLAMD 132

Query: 93  KMRSKQVVSSCGVPVCPSI-LVNRFTMDS-----QHLISPPYVIKPLKGGSSLGIIVIKK 146
           K+ +K+V+ S G+   P + LV+   ++      +  ++ P   KP   GSS+GI   K 
Sbjct: 133 KITTKRVLESAGIAQVPYVALVDGEDLEQKIQEIEEKLTYPVFTKPSNMGSSVGI--SKS 190

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYE 203
           +    L      ++ +  ++L+EQ V   E+  G++G+  +  T   E+ V    FY YE
Sbjct: 191 ENQAELRASLDLAFKYDSRVLVEQGVTAREIEVGLLGNVDVKSTLPGEV-VKDVAFYDYE 249

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            KY     T  +PAKIP ++   +++ A  A +A+G  G+SR DF +     +VF  E+N
Sbjct: 250 AKYIDNKITMDIPAKIPEEVVSLMRQNAEAAFRALGGLGLSRCDFFYAE-DGQVFLNELN 308

Query: 264 VQPGMTPVSIFPEMAAYAGYSFREL---LLWMVEDASCLR 300
             PG T  S++P +    G ++ +L   L+ + E+A   R
Sbjct: 309 TMPGFTQWSMYPLLWENMGLAYPDLIEKLVGLAEEAFAKR 348


>gi|254967025|gb|ACT97548.1| putative D-alanine-D-alanine ligase [uncultured organism]
          Length = 354

 Score =  127 bits (320), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 89/261 (34%), Positives = 132/261 (50%), Gaps = 15/261 (5%)

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           S G     ++ D+ F VLHG  GEDG VQ +LEL  IPY   G+LASA+SMDK+ +K +V
Sbjct: 84  SEGDATKEVRVDVVFPVLHGLRGEDGTVQGLLELARIPYVGCGVLASAVSMDKLYTKLIV 143

Query: 101 SSCG------VPVCPSIL--VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152
            S G      VPV  S L  +N      ++ +S P  +KP   GSS G  V K D    L
Sbjct: 144 DSLGIRQADYVPVRRSQLQDMNSVIASVENKLSYPVFVKPSNAGSSRG--VNKADNREEL 201

Query: 153 DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK----SDFYSYELKYSS 208
               + +  H  ++L+E+ + G E+ C V G    +V    V +    ++FY ++ KY +
Sbjct: 202 VFALNEAAKHDRKILVEETIIGHEVECAVFGGGLQEVKASGVGEIMAAAEFYDFDAKYYN 261

Query: 209 LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268
             S  V+  ++P    +E ++ A    +A+   G+SR DF        VF  EIN  PG 
Sbjct: 262 AESKTVVDPELPGHAAEEKKKAAVEIFKAVDGYGLSRVDFFVTDAGEVVF-NEINTLPGF 320

Query: 269 TPVSIFPEMAAYAGYSFRELL 289
           T +S++P +    G S   L+
Sbjct: 321 TAISMYPMLWEARGISKSRLV 341


>gi|294674880|ref|YP_003575496.1| D-alanine--D-alanine ligase [Prevotella ruminicola 23]
 gi|294474235|gb|ADE83624.1| D-alanine--D-alanine ligase [Prevotella ruminicola 23]
          Length = 330

 Score =  127 bits (320), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 92/329 (27%), Positives = 160/329 (48%), Gaps = 43/329 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-----------------DRSVG 43
           +A++ GG SSE +VSL S +   S  +   + V  +D+                 DR+  
Sbjct: 8   IAIVCGGDSSEHDVSLRSAQGLYSFFDKERYNVYIVDIKGQDWHVELPDGTTAKIDRNDF 67

Query: 44  LVLAHLKP---DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
             + + +    D A+  +HG  GE+GL+Q   +L+ +PY+ SG+L  A++ DK    Q +
Sbjct: 68  SFMENGEAKIFDYAYITIHGTPGENGLLQGYFDLIGLPYSTSGVLVEAMTFDKFVLNQYL 127

Query: 101 SSCGVPVCPSILVNR----FTMDS--QHLISPPYVIKPLKGGSSLGIIVIKKDQ----SI 150
              GV V  S+L+ +       D   +  I  P  +KP   GSS G+  +K+      +I
Sbjct: 128 RGYGVKVADSLLIRKGYEELVSDDEIEERIGMPCFVKPAADGSSFGVSKVKEKDMLAPAI 187

Query: 151 PLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS----LDVTEIAVPKSDFYSYELKY 206
              +L+S       ++++E Y++G E++ GV         L  TE+ V  ++F+ Y+ KY
Sbjct: 188 RKAMLESP------EIMVESYLEGTEISIGVYKTKEKAVVLPATEV-VTSNEFFDYDAKY 240

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
           +      + PA++P D+ + V+++    +  + C GI R DF+       +  LE+N  P
Sbjct: 241 NG-QVQEITPARLPEDVTERVRQITSHIYDILHCNGIIRIDFIISK-EGSISMLEVNTTP 298

Query: 267 GMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           GMT  S  P+    AG S  ++L  +VE+
Sbjct: 299 GMTATSFIPQQVRAAGLSMTDVLTEIVEN 327


>gi|327468992|gb|EGF14464.1| D-alanine-D-alanine ligase [Streptococcus sanguinis SK330]
          Length = 353

 Score =  127 bits (320), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 102/342 (29%), Positives = 171/342 (50%), Gaps = 50/342 (14%)

Query: 3   VLMGGISSEREVSLSSGKACASAL-------------EDAGFKVSQ-------------- 35
           +L GG S+EREVS+ S ++   A+             +D  F  +Q              
Sbjct: 13  LLYGGRSAEREVSVLSAESVMRAVNYDRFSVKTYFITKDGAFIQTQEFEAKPAADEKLMT 72

Query: 36  ---IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
              +D+ R +     +    + F VLHG  GEDG +Q  LE+L++PY    IL+S+L+MD
Sbjct: 73  NATVDMSRKIKPSDIYEDGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNILSSSLAMD 132

Query: 93  KMRSKQVVSSCGVPVCPSI-LVNRFTMDS-----QHLISPPYVIKPLKGGSSLGIIVIKK 146
           K+ +K+V+ S G+   P + LV+   ++      +  ++ P   KP   GSS+GI   + 
Sbjct: 133 KITTKRVLESAGIAQVPYVALVDGEDLEQKIQEIEEKLTYPVFTKPSNMGSSVGISKSEN 192

Query: 147 DQSI--PLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYS 201
            + +   LDL    ++ +  ++L+EQ V   E+  G++G+  +  T   E+ V    FY 
Sbjct: 193 REELRASLDL----AFKYDSRVLVEQGVTAREIEVGLLGNVDVKSTLPGEV-VKDVAFYD 247

Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
           YE KY     T  +PAKIP ++   +++ A  A +A+G  G+SR DF +     +VF  E
Sbjct: 248 YEAKYIDNKITMDIPAKIPEEVVSLMRQNAEAAFRALGGLGLSRCDFFYAE-DGQVFLNE 306

Query: 262 INVQPGMTPVSIFPEMAAYAGYSFREL---LLWMVEDASCLR 300
           +N  PG T  S++P +    G ++ +L   L+ + E+A   R
Sbjct: 307 LNTMPGFTQWSMYPLLWENMGLAYPDLIEKLVGLAEEAFAKR 348


>gi|159900023|ref|YP_001546270.1| D-alanine--D-alanine ligase [Herpetosiphon aurantiacus ATCC 23779]
 gi|229485958|sp|A9B406|DDL_HERA2 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|159893062|gb|ABX06142.1| D-alanine--D-alanine ligase [Herpetosiphon aurantiacus ATCC 23779]
          Length = 361

 Score =  127 bits (320), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 90/343 (26%), Positives = 154/343 (44%), Gaps = 57/343 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFN---- 56
           + ++ GG S E EVSL S +A  +AL+   + V  I + R+ G  L+   P LA      
Sbjct: 6   VGIVFGGKSGEHEVSLKSARAVMNALDPEKYTVIPIGITRN-GQWLSGGDPLLALEQQAD 64

Query: 57  ---------------------------------------VLHGNFGEDGLVQAILELLEI 77
                                                  VLHG FGEDG +Q + E   +
Sbjct: 65  QKMLGRTPQAGVVSETAIVQSAGSLPEQTNVAALDVIIPVLHGPFGEDGTIQGVFEFANL 124

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ---------HLISPPY 128
           PY   G+LA+++ MDK   K   ++ G+P  P  LV R    +Q           +  P 
Sbjct: 125 PYVGCGVLAASVGMDKGLMKSAFAAAGLPQVPWQLVLRRDWQTQPEAVYERLEATLHYPM 184

Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG--DAS 186
            +KP   GSS+GI  +     +   + +++ ++   ++++EQ ++  E+   ++G  D  
Sbjct: 185 FVKPANLGSSVGISKVSNRAELATGMAEAAGYDR--RIVVEQGINAREIEVAILGNDDPK 242

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRS 246
             V    +P +DFY Y  KY    +   +PA++     ++++ +A  A +AI   G++R 
Sbjct: 243 PSVPGEVLPANDFYDYADKYLEGQTQFAIPAELDAATSEQLREMAVTAFKAIDGAGLARV 302

Query: 247 DFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           DF  +  +  ++  EIN  PG T +S +P++    G  + ELL
Sbjct: 303 DFFVERETGAIYINEINTFPGFTAMSQYPKLWEATGLGYSELL 345


>gi|327489500|gb|EGF21293.1| D-alanine-D-alanine ligase [Streptococcus sanguinis SK1058]
          Length = 353

 Score =  127 bits (320), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 102/340 (30%), Positives = 168/340 (49%), Gaps = 46/340 (13%)

Query: 3   VLMGGISSEREVSLSSGKACASAL-------------EDAGFKVSQ-------------- 35
           +L GG S+EREVS+ S ++   A+             +D  F  +Q              
Sbjct: 13  LLYGGRSAEREVSVLSAESVMRAVNYDRFSVKTYFITKDGDFIQTQEFEAKPAADEKLMT 72

Query: 36  ---IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
              +D+ R +     +    + F VLHG  GEDG +Q  LE+L++PY    IL+S+L+MD
Sbjct: 73  NATVDMSRKIKPSDIYEDGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNILSSSLAMD 132

Query: 93  KMRSKQVVSSCGVPVCPSI-LVNRFTMDS-----QHLISPPYVIKPLKGGSSLGIIVIKK 146
           K+ +K+V+ S G+   P + LV+   ++      +  ++ P   KP   GSS+GI   K 
Sbjct: 133 KITTKRVLESAGIAQVPYVALVDGEDLEQKIQEIEEKLTYPVFTKPSNMGSSVGI--SKS 190

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYE 203
           +    L      ++ +  ++L+EQ V   E+  G++G+  +  T   E+ V    FY YE
Sbjct: 191 ENQAELRASLDLAFKYDSRVLVEQGVTAREIEVGLLGNVDVKSTLPGEV-VKDVAFYDYE 249

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            KY     T  +PAKIP ++   +++ A  A +A+G  G+SR DF +     +VF  E+N
Sbjct: 250 AKYIDNKITMDIPAKIPEEVVSLMRQNAEAAFRALGGLGLSRCDFFYAE-DGQVFLNELN 308

Query: 264 VQPGMTPVSIFPEMAAYAGYSFREL---LLWMVEDASCLR 300
             PG T  S++P +    G S+ +L   L+ + E+A   R
Sbjct: 309 TMPGFTQWSMYPLLWENMGLSYPDLIEKLVGLAEEAFAKR 348


>gi|317506518|ref|ZP_07964316.1| D-alanine-D-alanine ligase [Segniliparus rugosus ATCC BAA-974]
 gi|316255187|gb|EFV14459.1| D-alanine-D-alanine ligase [Segniliparus rugosus ATCC BAA-974]
          Length = 358

 Score =  127 bits (320), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 81/254 (31%), Positives = 135/254 (53%), Gaps = 14/254 (5%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-S 110
           D+ F VLHG FGEDG +Q +LE   +PY   G+ ASA  MDK + K ++   G+PV P  
Sbjct: 102 DVVFPVLHGPFGEDGTLQGLLEFANLPYVGCGVFASAACMDKTQMKVLLRGGGLPVGPYE 161

Query: 111 ILVNRFTMDSQHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL 167
            L     +D   L   +  P  +KP +GGSSLG++ +++ + +P  +  +  ++   ++L
Sbjct: 162 ALAPGEDVDEAALRDRLGLPLFVKPARGGSSLGVVKVERWEDLPEAVAVARKYDP--KVL 219

Query: 168 IEQYVDGIELTCGVMG--DASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD 222
           +E  + G E+ C V+   D  ++ +   EI VP  D Y +E KY +  +   +PA +   
Sbjct: 220 VETGIAGREVECAVLEFPDGRVEASVLGEIVVP--DAYDFETKYLNNIARLQVPADVSEP 277

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAG 282
           +  E++ LA  A + + C G++R DF        +   E+N  PG T  S++P+M    G
Sbjct: 278 LASEIRALAVRAFETMDCSGLARVDFFIAEDGGPIIN-ELNTLPGFTTSSLYPKMWEQTG 336

Query: 283 YSFRELLLWMVEDA 296
             + +LL  ++E A
Sbjct: 337 LDYSKLLDTLIETA 350


>gi|332072839|gb|EGI83320.1| D-alanine--D-alanine ligase family protein [Streptococcus
           pneumoniae GA17545]
          Length = 347

 Score =  127 bits (320), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 100/331 (30%), Positives = 160/331 (48%), Gaps = 43/331 (12%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKV----------------------------- 33
           +L GG S+EREVS+ S +    A+    F V                             
Sbjct: 7   LLYGGRSAEREVSVLSAENVMRAVNYDRFTVKTFFISQSGDFIKTQEFSQTPGQEDRLMT 66

Query: 34  -SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
            + ID D+ V     + +  + F VLHG  GEDG VQ  LE+L++PY    IL+S+L+MD
Sbjct: 67  NATIDWDKQVVPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLAMD 126

Query: 93  KMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           K+ +K+V+ S G+   P +       V     + +  ++ P   KP   GSS+GI   K 
Sbjct: 127 KITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLAYPVFTKPSNMGSSVGI--SKS 184

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYE 203
           +    L      ++ +  ++L+EQ V+  E+  G++G+  +  T   E+ V    FY Y+
Sbjct: 185 ENQEELRQALKLAFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVAFYDYD 243

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            KY     T  +PAKI  D+   +++ A  A +AIG  G+SR DF +     ++F  E+N
Sbjct: 244 AKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDFFYTD-KGEIFLNELN 302

Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             PG T  S++P +    G S+ EL+  +V+
Sbjct: 303 TMPGFTQWSMYPLLWDNMGISYPELIERLVD 333


>gi|296120283|ref|YP_003628061.1| D-alanine/D-alanine ligase [Planctomyces limnophilus DSM 3776]
 gi|296012623|gb|ADG65862.1| D-alanine/D-alanine ligase [Planctomyces limnophilus DSM 3776]
          Length = 338

 Score =  127 bits (320), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 100/301 (33%), Positives = 148/301 (49%), Gaps = 25/301 (8%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP------DLA 54
           +A+L GG S ER +SL SG+A   AL++ G  +  ID        +  LK       D  
Sbjct: 18  IALLAGGDSDERSISLRSGQAVCQALQERGHFILPIDP------AIVSLKGMDWNGFDAV 71

Query: 55  FNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP------VC 108
           F  LHG FGEDG VQ +LE   IPYT S   AS L+ DK  +KQ      VP      + 
Sbjct: 72  FIALHGRFGEDGGVQTLLEESGIPYTGSSSQASRLAFDKRIAKQNFDRMQVPTPAWCELS 131

Query: 109 PSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168
           P    +   M ++ L   P VIKP   GSSLG+ ++++ +   L      + ++ + L++
Sbjct: 132 PHESFDSLLMKAKEL-GWPVVIKPASQGSSLGVSIVRQPEQ--LQSAYERARHYDEALIM 188

Query: 169 EQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           E  + G E T G+  D  L    I   + +F+ +  KY   ++ ++    +P    ++++
Sbjct: 189 EAAIVGSEWTVGLHDDEILPPICIETDR-EFFDWVAKYEDDHTRYIFDKPLPATCRQKLE 247

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRE 287
                A  A+G  GISR D + D  S    W LEIN  PG+T  S+ P+ A  AG+S  E
Sbjct: 248 TACRGAVHALGVTGISRVDLMLD--SEGNPWVLEINTIPGLTDHSLVPKAAQQAGWSLGE 305

Query: 288 L 288
           L
Sbjct: 306 L 306


>gi|324993372|gb|EGC25292.1| D-alanine-D-alanine ligase [Streptococcus sanguinis SK405]
 gi|327458730|gb|EGF05078.1| D-alanine-D-alanine ligase [Streptococcus sanguinis SK1057]
          Length = 353

 Score =  127 bits (320), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 101/340 (29%), Positives = 169/340 (49%), Gaps = 46/340 (13%)

Query: 3   VLMGGISSEREVSLSSGKACASAL-------------EDAGFKVSQ-------------- 35
           +L GG S+EREVS+ S ++   A+             +D  F  +Q              
Sbjct: 13  LLYGGRSAEREVSVLSAESVMRAVNYDRFSVKTYFITKDGDFIQTQEFEAKPAADEKLMT 72

Query: 36  ---IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
              +D+ R +     +    + F VLHG  GEDG +Q  LE+L++PY    IL+S+L+MD
Sbjct: 73  NATVDMSRKIKPSDIYEDGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNILSSSLAMD 132

Query: 93  KMRSKQVVSSCGVPVCPSI-LVNRFTMDS-----QHLISPPYVIKPLKGGSSLGIIVIKK 146
           K+ +K+V+ S G+   P + LV+   ++      +  ++ P   KP   GSS+GI   K 
Sbjct: 133 KITTKRVLESAGIAQVPYVALVDGEDLEQKIQEIEEKLTYPVFTKPSNMGSSVGI--SKS 190

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYE 203
           +    L      ++ +  ++L+EQ V   E+  G++G+  +  T   E+ V    FY YE
Sbjct: 191 ENQAELRASLDLAFKYDSRVLVEQGVTAREIEVGLLGNVDVKSTLPGEV-VKDVAFYDYE 249

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            KY     T  +PAKIP ++   +++ A +A +A+G  G+SR DF +     +VF  E+N
Sbjct: 250 AKYIDNKITMDIPAKIPEEVVSLMRQNAEVAFRALGGLGLSRCDFFYAE-DGQVFLNELN 308

Query: 264 VQPGMTPVSIFPEMAAYAGYSFREL---LLWMVEDASCLR 300
             PG T  S++P +    G ++ +L   L+ + E+A   R
Sbjct: 309 TMPGFTQWSMYPLLWENMGLAYPDLIEKLVGLAEEAFAKR 348


>gi|289178027|gb|ADC85273.1| D-alanine--D-alanine ligase [Bifidobacterium animalis subsp. lactis
           BB-12]
          Length = 394

 Score =  127 bits (320), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 86/281 (30%), Positives = 135/281 (48%), Gaps = 34/281 (12%)

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV 105
           L H+  D+    LHG FGEDG +Q + E++ +PY   G+LASA  MDK  +K ++ + G+
Sbjct: 116 LGHI--DVVLPALHGPFGEDGTIQGLFEMMGVPYVGCGVLASAACMDKHYTKVLLRAAGI 173

Query: 106 PVCPSILV--------NRFTMDSQHLISP--------PYVIKPLKGGSSLGIIVIKK--D 147
           PV P I +        + F  D +  +          P  +KP + GSS G+  +++  D
Sbjct: 174 PVAPGITLDTRHYDASDEFATDGEEFLRQVNEAGLQYPLFVKPSRAGSSFGVTKVEQIGD 233

Query: 148 QSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP-----------K 196
            +     +  +S  H  ++L+EQ +D  E+ C V+     D T  A+P            
Sbjct: 234 AAALAAAVFEAS-RHDWRVLVEQGIDAREIECAVVRIHPTDPTRAALPGEVVLDRRSEGD 292

Query: 197 SDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255
             FY ++ KY    ++H  +PAKI  D+   V+  A  A  A+   G+SR D  F     
Sbjct: 293 DQFYDFDSKYMDSQASHTEIPAKIGDDLIARVRETAVRAFDAVDGMGLSRVD-TFVTADG 351

Query: 256 KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            V   EIN  PG T +S+FP+     G  FR ++  ++E A
Sbjct: 352 DVLVNEINTLPGCTSISMFPQAWEAMGIPFRTVVTDLIEGA 392


>gi|296132694|ref|YP_003639941.1| D-alanine/D-alanine ligase [Thermincola sp. JR]
 gi|296031272|gb|ADG82040.1| D-alanine/D-alanine ligase [Thermincola potens JR]
          Length = 365

 Score =  127 bits (320), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 98/345 (28%), Positives = 159/345 (46%), Gaps = 54/345 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS------------------- 41
           +AV+ GG S E EVSL+S  +   AL    +++  I + R                    
Sbjct: 6   VAVIFGGKSGEHEVSLASANSVLQALNKEKYEIIPIKISREGKWYILSSLNTFDSNIKCE 65

Query: 42  -------VGLVLAHLKP-------------DLAFNVLHGNFGEDGLVQAILELLEIPYTH 81
                   G  L +L+              D+   VLHG FGEDG +Q +LEL  IPY  
Sbjct: 66  AAILADPTGDNLVNLQEKEPGQIFFTRESVDVVLPVLHGTFGEDGTLQGLLELANIPYVG 125

Query: 82  SGILASALSMDKMRSKQVVSSCGVPVCP--SILVNRFTMDS-------QHLISPPYVIKP 132
            G+ AS++ MDK   K + +   +P     + L   +  D        +  +  P  +KP
Sbjct: 126 CGVAASSVGMDKAMMKAMFAQHNLPQGKYLTFLRKEWEKDQDPICDEIETALGYPVFVKP 185

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT-- 190
              GSS+GI        +   +  +  ++   ++++E+ ++G E+   V+G+   + +  
Sbjct: 186 ANLGSSVGISKAANRDELVKAMHLACLYDR--KVVVEENINGREIEVAVLGNDEPEASIA 243

Query: 191 -EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
            EI VP +DFY YE KY S  S   +PA +      EV++LA  A +AI   G+SR DF 
Sbjct: 244 GEI-VPCNDFYDYEAKYISGTSELKIPAPLDDKTMNEVRKLAVKAFKAIDGAGLSRVDFF 302

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
               + ++   EIN  PG T +S++P++ A  G  + +LL  ++E
Sbjct: 303 IKKDTGEILINEINTLPGFTEISMYPKLWAATGLPYDKLLDRLIE 347


>gi|325688255|gb|EGD30274.1| D-alanine-D-alanine ligase [Streptococcus sanguinis SK72]
          Length = 353

 Score =  127 bits (320), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 101/340 (29%), Positives = 169/340 (49%), Gaps = 46/340 (13%)

Query: 3   VLMGGISSEREVSLSSGKACASAL-------------EDAGFKVSQ-------------- 35
           +L GG S+ERE+S+ S ++   A+             +D  F  +Q              
Sbjct: 13  LLYGGRSAEREISVLSAESVMRAVNYDRFSVKTYFITKDGDFIQTQEFEAKPVADEKLMT 72

Query: 36  ---IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
              +D+ R +     +    + F VLHG  GEDG +Q  LE+L++PY    IL+S+L+MD
Sbjct: 73  NATVDMSRKIKPSDIYEDGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNILSSSLAMD 132

Query: 93  KMRSKQVVSSCGVPVCPSI-LVNRFTMDS-----QHLISPPYVIKPLKGGSSLGIIVIKK 146
           K+ +K+V+ S G+   P + LV+   ++      +  ++ P   KP   GSS+GI   K 
Sbjct: 133 KITTKRVLESAGIAQVPYVALVDGEDLEQKIQEIEEKLTYPVFTKPSNMGSSVGI--SKS 190

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYE 203
           +    L      ++ +  ++L+EQ V   E+  G++G+  +  T   E+ V    FY YE
Sbjct: 191 ENRAELRASLDLAFKYDSRVLVEQGVTAREIEVGLLGNVDVKSTLPGEV-VKDVAFYDYE 249

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            KY     T  +PAKIP ++   +++ A  A +A+G  G++R DF +   S +VF  E+N
Sbjct: 250 AKYIDNKITMDIPAKIPEEVVSLMRQNAEAAFRALGGLGLARCDFFYTEDS-QVFLNELN 308

Query: 264 VQPGMTPVSIFPEMAAYAGYSFREL---LLWMVEDASCLR 300
             PG T  S++P +    G S+ +L   L+ + E+A   R
Sbjct: 309 TMPGFTQWSMYPLLWENMGLSYPDLIEKLVGLAEEAFAKR 348


>gi|254967019|gb|ACT97545.1| putative D-alanine-D-alanine ligase [uncultured organism]
          Length = 354

 Score =  127 bits (320), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 88/261 (33%), Positives = 132/261 (50%), Gaps = 15/261 (5%)

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           S G     ++ D+ F VLHG  GEDG VQ +LEL  IPY   G+LASA+SMDK+ +K +V
Sbjct: 84  SEGDATKEVRVDVVFPVLHGLRGEDGTVQGLLELARIPYVGCGVLASAVSMDKLYTKLIV 143

Query: 101 SSCG------VPVCPSIL--VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152
            S G      VPV  S L  +N      ++ +S P  +KP   GSS G  V K D    L
Sbjct: 144 DSLGIRQADYVPVRRSQLQDMNSVIASVENKLSYPVFVKPSNAGSSRG--VNKADNREEL 201

Query: 153 DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK----SDFYSYELKYSS 208
               + +  H  ++L+E+ + G E+ C V G    +V    V +    ++FY ++ KY +
Sbjct: 202 VFALNEAAKHDRKILVEETIIGHEVECAVFGGGLQEVKASGVGEIMAAAEFYDFDAKYYN 261

Query: 209 LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268
             S  V+  ++P    +++ + A    +A+   G+SR DF        VF  EIN  PG 
Sbjct: 262 AESKTVVDPELPGHAAEDINKAAVEIFKAVDGYGLSRVDFFVTDAGEVVF-NEINTLPGF 320

Query: 269 TPVSIFPEMAAYAGYSFRELL 289
           T +S++P +    G S   L+
Sbjct: 321 TAISMYPMLWEARGISKSRLV 341


>gi|228963329|ref|ZP_04124494.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar sotto
           str. T04001]
 gi|228796357|gb|EEM43800.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar sotto
           str. T04001]
          Length = 361

 Score =  127 bits (320), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 77/249 (30%), Positives = 136/249 (54%), Gaps = 14/249 (5%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-- 109
           D+ F +LHG  GEDG VQ +LEL+ IPY  +G+LAS+  MDK+  K + +  G+      
Sbjct: 95  DVIFPLLHGPNGEDGTVQGLLELMNIPYVGNGVLASSAGMDKVVMKNIFAEAGLKQAKYA 154

Query: 110 SILVNRFTMDSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
           S + + +  D +   S        P  +KP   GSS+GI   K  + +    +++  ++ 
Sbjct: 155 SFIRSAWEKDREEAYSKVEDKLGYPCFVKPANLGSSVGINKCKNREELENAFVEAFQFDR 214

Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVTEIA--VPKSDFYSYELKYSSLNSTHVLPAKIP 220
             ++++E+ + G E+  GV+G+     + +   VPK DFY Y+ KY   ++  ++PA++ 
Sbjct: 215 --KIIVEENIVGREVEVGVLGNDEPKCSVVGEIVPKKDFYDYKSKYIDGDTALIIPAEMT 272

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280
            +    ++R A +A Q++   G++R+DF F     +V+  E+N  PG TP S+FP +  +
Sbjct: 273 EEESDVIKRDAIIAFQSLDGAGLTRADF-FLTKDGEVYINEVNTMPGFTPFSMFPLLWQH 331

Query: 281 AGYSFRELL 289
            G  + EL+
Sbjct: 332 TGLPYPELI 340


>gi|75760676|ref|ZP_00740702.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|74491826|gb|EAO55016.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
          Length = 367

 Score =  127 bits (320), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 77/249 (30%), Positives = 136/249 (54%), Gaps = 14/249 (5%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-- 109
           D+ F +LHG  GEDG VQ +LEL+ IPY  +G+LAS+  MDK+  K + +  G+      
Sbjct: 101 DVIFPLLHGPNGEDGTVQGLLELMNIPYVGNGVLASSAGMDKVVMKNIFAEAGLTQAKYA 160

Query: 110 SILVNRFTMDSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
           S + + +  D +   S        P  +KP   GSS+GI   K  + +    +++  ++ 
Sbjct: 161 SFIRSAWEKDREEAYSKVEDKLGYPCFVKPANLGSSVGINKCKNREELENAFVEAFQFDR 220

Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVTEIA--VPKSDFYSYELKYSSLNSTHVLPAKIP 220
             ++++E+ + G E+  GV+G+     + +   VPK DFY Y+ KY   ++  ++PA++ 
Sbjct: 221 --KIIVEENIVGREVEVGVLGNDEPKCSVVGEIVPKKDFYDYKSKYIDGDTALIIPAEMT 278

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280
            +    ++R A +A Q++   G++R+DF F     +V+  E+N  PG TP S+FP +  +
Sbjct: 279 EEESDVIKRDAIIAFQSLDGAGLTRADF-FLTKDGEVYINEVNTMPGFTPFSMFPLLWQH 337

Query: 281 AGYSFRELL 289
            G  + EL+
Sbjct: 338 TGLPYPELI 346


>gi|311071126|ref|YP_003976049.1| D-alanyl-alanine synthetase A [Bacillus atrophaeus 1942]
 gi|310871643|gb|ADP35118.1| D-alanyl-alanine synthetase A [Bacillus atrophaeus 1942]
          Length = 361

 Score =  127 bits (320), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 83/255 (32%), Positives = 138/255 (54%), Gaps = 16/255 (6%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-- 109
           D+ F +LHG  GEDG +Q +LELL IPY  +G+LAS+  MDK+  K + +  G+      
Sbjct: 95  DVVFPLLHGPNGEDGTIQGLLELLNIPYVGNGVLASSAGMDKVVMKHLFAQAGLSQAKYA 154

Query: 110 SILVNRFTMDSQHL-------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
           + L   ++  S+         +  P  +KP   GSS+GI   +  +   L+     ++ +
Sbjct: 155 AFLKKDWSRSSEECCEQVEKELGYPCFVKPANLGSSVGISKCRSREE--LEKAFELAFQY 212

Query: 163 GDQLLIEQYVDGIELTCGVMGDASLD---VTEIAVPKSDFYSYELKYSSLNSTHVLPAKI 219
             ++++E+ V G E+  GV+G+       V EIA PK+DFY Y+ KY   ++  ++PA++
Sbjct: 213 DRKVVVEEGVIGREIEIGVLGNDEPKCSVVGEIA-PKTDFYDYKAKYEDGDTDLIIPAEV 271

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279
             D Y ++  +A  A +AI   G+ R+DF F     +V   E+N  PG TP S+FP +  
Sbjct: 272 TDDQYAKISDMAIKAFKAIDGSGLVRADF-FLTADGEVLINEVNTMPGFTPFSMFPLLWK 330

Query: 280 YAGYSFRELLLWMVE 294
            AG  + +L+  +V+
Sbjct: 331 EAGIEYADLIEQLVD 345


>gi|229171080|ref|ZP_04298678.1| D-alanine--D-alanine ligase [Bacillus cereus MM3]
 gi|228612410|gb|EEK69634.1| D-alanine--D-alanine ligase [Bacillus cereus MM3]
          Length = 361

 Score =  127 bits (320), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 94/338 (27%), Positives = 163/338 (48%), Gaps = 52/338 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------DRSVGLVL----- 46
           + +L GG S+E +VSL +  A   AL    F++  I +         +R  G V      
Sbjct: 6   LGLLYGGKSAEHQVSLQTALAAIKALNQDKFEIHPIYITEQGQWVRGERIEGEVTDVEVL 65

Query: 47  ---------------AHLKP---------DLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
                            + P         D+ F +LHG  GEDG VQ +LEL+ IPY  +
Sbjct: 66  KMSGAENAISPLSLSTEIIPSAASEENAIDVIFPLLHGPNGEDGTVQGLLELMNIPYVGN 125

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCP--SILVNRFTMDS-------QHLISPPYVIKPL 133
           G+LASA  MDK+  K + +  G+      S + + +  D        + ++  P  +KP 
Sbjct: 126 GVLASAAGMDKVVMKNIFAEAGLKQAKYASFIRSAWEKDYETAYEKVEEVLGYPCFVKPA 185

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
             GSS+GI   K  + +     ++  ++   ++++E+ + G E+  GV+G+     + + 
Sbjct: 186 NLGSSVGINKCKNREELENAFEEAFQFDR--KIIVEENIVGREVEVGVLGNDEPKCSVVG 243

Query: 194 --VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
             VPK DFY Y+ KY   ++  ++PA++  +    ++R A +A Q++   G++R+DF F 
Sbjct: 244 EIVPKKDFYDYKSKYIDGDTALIIPAEMTEEESNVIKRDAIIAFQSLDSAGLTRADF-FL 302

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
               +V+  E+N  PG TP S+FP +  + G  + EL+
Sbjct: 303 TKDGEVYINEVNTMPGFTPFSMFPLLWQHTGLPYPELI 340


>gi|183601816|ref|ZP_02963185.1| D-alanine-D-alanine ligase [Bifidobacterium animalis subsp. lactis
           HN019]
 gi|219682731|ref|YP_002469114.1| D-alanyl-alanine synthetase A [Bifidobacterium animalis subsp.
           lactis AD011]
 gi|241190307|ref|YP_002967701.1| D-alanyl-alanine synthetase A [Bifidobacterium animalis subsp.
           lactis Bl-04]
 gi|241195713|ref|YP_002969268.1| D-alanyl-alanine synthetase A [Bifidobacterium animalis subsp.
           lactis DSM 10140]
 gi|254767721|sp|B8DVN7|DDL_BIFA0 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|183218701|gb|EDT89343.1| D-alanine-D-alanine ligase [Bifidobacterium animalis subsp. lactis
           HN019]
 gi|219620381|gb|ACL28538.1| D-alanine-D-alanine ligase [Bifidobacterium animalis subsp. lactis
           AD011]
 gi|240248699|gb|ACS45639.1| D-alanine-D-alanine ligase [Bifidobacterium animalis subsp. lactis
           Bl-04]
 gi|240250267|gb|ACS47206.1| D-alanine-D-alanine ligase [Bifidobacterium animalis subsp. lactis
           DSM 10140]
 gi|295793294|gb|ADG32829.1| D-alanine-D-alanine ligase [Bifidobacterium animalis subsp. lactis
           V9]
          Length = 378

 Score =  127 bits (320), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 86/281 (30%), Positives = 135/281 (48%), Gaps = 34/281 (12%)

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV 105
           L H+  D+    LHG FGEDG +Q + E++ +PY   G+LASA  MDK  +K ++ + G+
Sbjct: 100 LGHI--DVVLPALHGPFGEDGTIQGLFEMMGVPYVGCGVLASAACMDKHYTKVLLRAAGI 157

Query: 106 PVCPSILV--------NRFTMDSQHLISP--------PYVIKPLKGGSSLGIIVIKK--D 147
           PV P I +        + F  D +  +          P  +KP + GSS G+  +++  D
Sbjct: 158 PVAPGITLDTRHYDASDEFATDGEEFLRQVNEAGLQYPLFVKPSRAGSSFGVTKVEQIGD 217

Query: 148 QSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP-----------K 196
            +     +  +S  H  ++L+EQ +D  E+ C V+     D T  A+P            
Sbjct: 218 AAALAAAVFEAS-RHDWRVLVEQGIDAREIECAVVRIHPTDPTRAALPGEVVLDRRSEGD 276

Query: 197 SDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255
             FY ++ KY    ++H  +PAKI  D+   V+  A  A  A+   G+SR D  F     
Sbjct: 277 DQFYDFDSKYMDSQASHTEIPAKIGDDLIARVRETAVRAFDAVDGMGLSRVD-TFVTADG 335

Query: 256 KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            V   EIN  PG T +S+FP+     G  FR ++  ++E A
Sbjct: 336 DVLVNEINTLPGCTSISMFPQAWEAMGIPFRTVVTDLIEGA 376


>gi|168334521|ref|ZP_02692682.1| D-alanine--D-alanine ligase [Epulopiscium sp. 'N.t. morphotype B']
          Length = 349

 Score =  127 bits (320), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 72/262 (27%), Positives = 139/262 (53%), Gaps = 13/262 (4%)

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV 105
           + ++K +  F ++HG +GEDG +Q +  L ++P+   G+L+SA+SMDK  +K  V   G+
Sbjct: 90  IVNIKINKVFPIMHGKYGEDGTIQGLCTLAQLPFVGCGVLSSAISMDKSFTKIAVEKTGI 149

Query: 106 PVCPSILV--------NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
                +LV        N+     +     PY +KP   GSS+GI  +   + +   L  +
Sbjct: 150 RQAKYVLVKSSELKHMNQVVSKIEETFGYPYFVKPANAGSSVGINKVHNKRELEHALRVA 209

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA--VPKSDFYSYELKYSSLNSTHVL 215
           +  +   ++L+E+ + G E+   V+G+  L ++ +   +  ++FY ++ KY++  S  V+
Sbjct: 210 AKEDA--KILVEETIIGREVEVAVLGNEELQISGVGEILAAAEFYDFDAKYNNAESKTVI 267

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275
            A++P +I + ++  A   ++A+  +G+SR DF        +F  EIN  PG T +S++P
Sbjct: 268 CAELPDEIKENLREAAKKIYKAVDAKGLSRVDFFVTETGDMIFN-EINTMPGFTKISMYP 326

Query: 276 EMAAYAGYSFRELLLWMVEDAS 297
            +    G S + L+  ++  AS
Sbjct: 327 MLFEDFGISIKNLITELINLAS 348


>gi|315613579|ref|ZP_07888486.1| D-alanine-D-alanine ligase [Streptococcus sanguinis ATCC 49296]
 gi|315314270|gb|EFU62315.1| D-alanine-D-alanine ligase [Streptococcus sanguinis ATCC 49296]
          Length = 347

 Score =  127 bits (319), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 98/331 (29%), Positives = 160/331 (48%), Gaps = 43/331 (12%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKV----------------------------- 33
           +L GG S+EREVS+ S ++   A+    F V                             
Sbjct: 7   LLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDFIKTQEFSQTPGQEDRLMT 66

Query: 34  -SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
            + ID D+ +     + +  + F VLHG  GEDG VQ  LE+L++PY    IL+S+L+MD
Sbjct: 67  NATIDWDKKIAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLAMD 126

Query: 93  KMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           K+ +K+V+ S G+   P +       V     + +  ++ P   KP   GSS+GI   K 
Sbjct: 127 KITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLTYPVFTKPSNMGSSVGI--SKS 184

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYE 203
           +    L      ++ +  ++L+EQ V+  E+  G++G+  +  T   E+ V    FY Y+
Sbjct: 185 ENQEELRQALELAFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVAFYDYD 243

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            KY     T  +PAKI  D+   ++  A  A +AIG  G+SR DF +     ++F  E+N
Sbjct: 244 AKYIDNKITMDIPAKISDDVVAVMRHNAETAFRAIGGLGLSRCDFFYTD-KGEIFLNELN 302

Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             PG T  S++P +    G S+ +L+  +V+
Sbjct: 303 TMPGFTQWSMYPLLWDNMGISYPDLIEHLVD 333


>gi|228906016|ref|ZP_04069908.1| D-alanine--D-alanine ligase [Bacillus thuringiensis IBL 200]
 gi|228853619|gb|EEM98384.1| D-alanine--D-alanine ligase [Bacillus thuringiensis IBL 200]
          Length = 364

 Score =  127 bits (319), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 77/249 (30%), Positives = 136/249 (54%), Gaps = 14/249 (5%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-- 109
           D+ F +LHG  GEDG VQ +LEL+ IPY  +G+LAS+  MDK+  K + +  G+      
Sbjct: 98  DVIFPLLHGPNGEDGTVQGLLELMNIPYVGNGVLASSAGMDKVVMKNIFAEAGLKQAKYA 157

Query: 110 SILVNRFTMDSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
           S + + +  D +   S        P  +KP   GSS+GI   K  + +    +++  ++ 
Sbjct: 158 SFIRSAWEKDREEAYSKVEDKLGYPCFVKPANLGSSVGINKCKNREELENAFVEAFQFDR 217

Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVTEIA--VPKSDFYSYELKYSSLNSTHVLPAKIP 220
             ++++E+ + G E+  GV+G+     + +   VPK DFY Y+ KY   ++  ++PA++ 
Sbjct: 218 --KIIVEENIVGREVEVGVLGNDEPKCSVVGEIVPKKDFYDYKSKYIDGDTALIIPAEMT 275

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280
            +    ++R A +A Q++   G++R+DF F     +V+  E+N  PG TP S+FP +  +
Sbjct: 276 GEESDVIKRDAIIAFQSLDGAGLTRADF-FLTKDGEVYINEVNTMPGFTPFSMFPLLWQH 334

Query: 281 AGYSFRELL 289
            G  + EL+
Sbjct: 335 TGLPYPELI 343


>gi|256044912|ref|ZP_05447816.1| D-alanine--D-alanine ligase A [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|260565487|ref|ZP_05835971.1| D-alanine-D-alanine ligase A [Brucella melitensis bv. 1 str. 16M]
 gi|265991340|ref|ZP_06103897.1| D-alanine-D-alanine ligase A [Brucella melitensis bv. 1 str. Rev.1]
 gi|38257346|sp|Q8YHR9|DDLA_BRUME RecName: Full=D-alanine--D-alanine ligase A; AltName:
           Full=D-Ala-D-Ala ligase A; AltName: Full=D-alanylalanine
           synthetaseA
 gi|260151555|gb|EEW86649.1| D-alanine-D-alanine ligase A [Brucella melitensis bv. 1 str. 16M]
 gi|263002124|gb|EEZ14699.1| D-alanine-D-alanine ligase A [Brucella melitensis bv. 1 str. Rev.1]
          Length = 353

 Score =  127 bits (319), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 96/343 (27%), Positives = 168/343 (48%), Gaps = 55/343 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           + VL GG S+E +VS+ S     +AL+ A ++   + V R+   +L+             
Sbjct: 8   IVVLFGGRSAEHDVSVLSATNVMNALDPAKYEAVPVFVTRAGQWLLSRFVNGALEKPSSG 67

Query: 50  --------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                     K D+ F VLHG  GEDG VQ + ++  +P    G
Sbjct: 68  AELCLVPGGCGRAIVVPDAGAPYEADKIDIIFPVLHGLHGEDGAVQGLAQVARVPLAGCG 127

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSL 139
           I  SA ++DK  +K++V+  G+    S+ + R  + +    +  +  P  IKP + GSS+
Sbjct: 128 IPGSANALDKDIAKRLVNEAGLSTAKSVTITREEVPAFSALEQALGLPIFIKPARQGSSV 187

Query: 140 GI--IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD--ASLDVTEIA-- 193
           G+  +V + D    +    S  + + D+LL E+++   E+ CGV+ D   +L V+     
Sbjct: 188 GVHKVVTEADYQAAM----SDGFIYDDKLLAEEFIQAREVECGVLEDEGGALFVSRAGEI 243

Query: 194 VPKSD--FYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
           VP     FYSY+ KY   + T + +PA++P  +  E++ +A  A + +GC  ++R DF F
Sbjct: 244 VPAESHCFYSYDAKYIDADGTEIKVPAELPEQVENEIRAIAAKAFRVLGCDSMARVDF-F 302

Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
               R++   EIN  PG T +S++ ++ A +G S+ E++  +V
Sbjct: 303 VTADRRIVLNEINTIPGFTDMSMYFKVMAVSGVSYPEIINRLV 345


>gi|218895357|ref|YP_002443768.1| D-alanine--D-alanine ligase [Bacillus cereus G9842]
 gi|228898974|ref|ZP_04063252.1| D-alanine--D-alanine ligase [Bacillus thuringiensis IBL 4222]
 gi|218541748|gb|ACK94142.1| D-alanine--D-alanine ligase [Bacillus cereus G9842]
 gi|228860667|gb|EEN05049.1| D-alanine--D-alanine ligase [Bacillus thuringiensis IBL 4222]
          Length = 361

 Score =  127 bits (319), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 77/249 (30%), Positives = 136/249 (54%), Gaps = 14/249 (5%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-- 109
           D+ F +LHG  GEDG VQ +LEL+ IPY  +G+LAS+  MDK+  K + +  G+      
Sbjct: 95  DVIFPLLHGPNGEDGTVQGLLELMNIPYVGNGVLASSAGMDKVVMKNIFAEAGLTQAKYA 154

Query: 110 SILVNRFTMDSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
           S + + +  D +   S        P  +KP   GSS+GI   K  + +    +++  ++ 
Sbjct: 155 SFIRSAWEKDREEAYSKVEDKLGYPCFVKPANLGSSVGINKCKNREELENAFVEAFQFDR 214

Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVTEIA--VPKSDFYSYELKYSSLNSTHVLPAKIP 220
             ++++E+ + G E+  GV+G+     + +   VPK DFY Y+ KY   ++  ++PA++ 
Sbjct: 215 --KIIVEENIVGREVEVGVLGNDEPKCSVVGEIVPKKDFYDYKSKYIDGDTALIIPAEMT 272

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280
            +    ++R A +A Q++   G++R+DF F     +V+  E+N  PG TP S+FP +  +
Sbjct: 273 EEESDVIKRDAIIAFQSLDGAGLTRADF-FLTKDGEVYINEVNTMPGFTPFSMFPLLWQH 331

Query: 281 AGYSFRELL 289
            G  + EL+
Sbjct: 332 TGLPYPELI 340


>gi|125623230|ref|YP_001031713.1| D-alanyl-alanine synthetase A [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|166198487|sp|A2RI72|DDL_LACLM RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|124492038|emb|CAL96965.1| D-alanine-D-alanine ligase [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|300069981|gb|ADJ59381.1| D-alanyl-alanine synthetase A [Lactococcus lactis subsp. cremoris
           NZ9000]
          Length = 349

 Score =  127 bits (319), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 102/336 (30%), Positives = 159/336 (47%), Gaps = 48/336 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           + +L GG S+EREVS+ S ++   A+  + F V    + +    +               
Sbjct: 6   LILLYGGRSAEREVSVLSAESVMRAVNYSRFIVKTYFITKGGEFIKTQEFTDRPAEEEKL 65

Query: 49  LKPDLA------------------FNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
           L  DLA                  F VLHG  GEDG +Q  LE+L + Y    IL+++ +
Sbjct: 66  LTNDLAESYPKISPAAIYEKDAVVFPVLHGPMGEDGSIQGFLEILRLAYVGPNILSASST 125

Query: 91  MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP--------PYVIKPLKGGSSLGII 142
           MDK+ +K V  + GVP  P   V  F  ++Q  I+         P  +KP   GSS+GI 
Sbjct: 126 MDKLLAKHVFEAVGVPQVP--YVAAFADENQVEIAQEVVEKLDFPVFVKPANMGSSVGI- 182

Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI----AVPKSD 198
             K D    L    S ++ + ++++IEQ VD  E+ C V+G+ S DV+       V    
Sbjct: 183 -SKVDDLADLQPALSEAYKYDNRVVIEQGVDAREIECAVLGNNS-DVSATLPGEVVKDVG 240

Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
           FY Y  KY        +PAK+  D+ +++Q  A  A++A+   G+SR DF F      V+
Sbjct: 241 FYDYNSKYIDNKIQMDIPAKVSADLAQKIQEYAKKAYKAVNGAGLSRCDF-FVTKDGNVY 299

Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             E+N  PG T  S++P +    G S+ +L+  +V+
Sbjct: 300 LNEVNAIPGFTQWSMYPLLWENMGLSYSDLIEKLVD 335


>gi|17987010|ref|NP_539644.1| D-alanyl-alanine synthetase A [Brucella melitensis bv. 1 str. 16M]
 gi|17982662|gb|AAL51908.1| d-alanine--d-alanine ligase a [Brucella melitensis bv. 1 str. 16M]
          Length = 366

 Score =  127 bits (319), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 96/343 (27%), Positives = 168/343 (48%), Gaps = 55/343 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           + VL GG S+E +VS+ S     +AL+ A ++   + V R+   +L+             
Sbjct: 21  IVVLFGGRSAEHDVSVLSATNVMNALDPAKYEAVPVFVTRAGQWLLSRFVNGALEKPSSG 80

Query: 50  --------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                     K D+ F VLHG  GEDG VQ + ++  +P    G
Sbjct: 81  AELCLVPGGCGRAIVVPDAGAPYEADKIDIIFPVLHGLHGEDGAVQGLAQVARVPLAGCG 140

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSL 139
           I  SA ++DK  +K++V+  G+    S+ + R  + +    +  +  P  IKP + GSS+
Sbjct: 141 IPGSANALDKDIAKRLVNEAGLSTAKSVTITREEVPAFSALEQALGLPIFIKPARQGSSV 200

Query: 140 GI--IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD--ASLDVTEIA-- 193
           G+  +V + D    +    S  + + D+LL E+++   E+ CGV+ D   +L V+     
Sbjct: 201 GVHKVVTEADYQAAM----SDGFIYDDKLLAEEFIQAREVECGVLEDEGGALFVSRAGEI 256

Query: 194 VPKSD--FYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
           VP     FYSY+ KY   + T + +PA++P  +  E++ +A  A + +GC  ++R DF F
Sbjct: 257 VPAESHCFYSYDAKYIDADGTEIKVPAELPEQVENEIRAIAAKAFRVLGCDSMARVDF-F 315

Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
               R++   EIN  PG T +S++ ++ A +G S+ E++  +V
Sbjct: 316 VTADRRIVLNEINTIPGFTDMSMYFKVMAVSGVSYPEIINRLV 358


>gi|42779346|ref|NP_976593.1| D-alanyl-alanine synthetase A [Bacillus cereus ATCC 10987]
 gi|42735261|gb|AAS39201.1| D-alanine--D-alanine ligase [Bacillus cereus ATCC 10987]
          Length = 361

 Score =  127 bits (319), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 94/338 (27%), Positives = 163/338 (48%), Gaps = 52/338 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------DRSVGLVL----- 46
           + +L GG S+E +VSL +  A   AL    F++  I +         +R  G V      
Sbjct: 6   LGLLYGGKSAEHQVSLQTALAAIKALNQDKFEIHPIYITEQGQWVRGERIEGEVTDVEVL 65

Query: 47  ---------------AHLKP---------DLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
                            + P         D+ F +LHG  GEDG VQ +LEL+ IPY  +
Sbjct: 66  KMSGAENAISPLSLSTEIIPSTNAEENAIDVIFPLLHGPNGEDGTVQGLLELMNIPYVGN 125

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCP--SILVNRFTMDS-------QHLISPPYVIKPL 133
           G+LASA  MDK+  K + +  G+      S + + +  D        + ++  P  +KP 
Sbjct: 126 GVLASAAGMDKVVMKNIFAEAGLKQAKYASFIRSAWEKDRETAYEKVEEVLGYPCFVKPA 185

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
             GSS+GI   K  + +     ++  ++   ++++E+ + G E+  GV+G+     + + 
Sbjct: 186 NLGSSVGINKCKNREELENAFEEAFQFDR--KIIVEENIVGREVEVGVLGNDEPKCSVVG 243

Query: 194 --VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
             VPK DFY Y+ KY   ++  ++PA++  +    ++R A +A Q++   G++R+DF F 
Sbjct: 244 EIVPKKDFYDYKSKYIDGDTALIIPAEMTEEESNVIKRDAIVAFQSLDGAGLTRADF-FL 302

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
               +V+  E+N  PG TP S+FP +  + G  + EL+
Sbjct: 303 TKDGEVYINEVNTMPGFTPFSMFPLLWQHTGLPYPELI 340


>gi|22536931|ref|NP_687782.1| D-alanyl-alanine synthetase A [Streptococcus agalactiae 2603V/R]
 gi|25010842|ref|NP_735237.1| D-alanyl-alanine synthetase A [Streptococcus agalactiae NEM316]
 gi|76787870|ref|YP_329514.1| D-alanyl-alanine synthetase A [Streptococcus agalactiae A909]
 gi|76798442|ref|ZP_00780681.1| D-alanine--D-alanine ligase (D-alanylalanine
           synthetase)(D-Ala-D-Ala ligase) [Streptococcus
           agalactiae 18RS21]
 gi|77406739|ref|ZP_00783776.1| D-alanine--D-alanine ligase [Streptococcus agalactiae H36B]
 gi|77409084|ref|ZP_00785800.1| D-alanine--D-alanine ligase [Streptococcus agalactiae COH1]
 gi|77414685|ref|ZP_00790819.1| D-alanine--D-alanine ligase [Streptococcus agalactiae 515]
 gi|39930893|sp|Q8E0G6|DDL_STRA5 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|39930895|sp|Q8E640|DDL_STRA3 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|123602002|sp|Q3K1T9|DDL_STRA1 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|22533783|gb|AAM99654.1|AE014226_14 D-alanine--D-alanine ligase [Streptococcus agalactiae 2603V/R]
 gi|23095221|emb|CAD46431.1| Unknown [Streptococcus agalactiae NEM316]
 gi|76562927|gb|ABA45511.1| D-alanine--D-alanine ligase [Streptococcus agalactiae A909]
 gi|76586204|gb|EAO62723.1| D-alanine--D-alanine ligase (D-alanylalanine
           synthetase)(D-Ala-D-Ala ligase) [Streptococcus
           agalactiae 18RS21]
 gi|77159263|gb|EAO70440.1| D-alanine--D-alanine ligase [Streptococcus agalactiae 515]
 gi|77172301|gb|EAO75454.1| D-alanine--D-alanine ligase [Streptococcus agalactiae COH1]
 gi|77174644|gb|EAO77476.1| D-alanine--D-alanine ligase [Streptococcus agalactiae H36B]
          Length = 348

 Score =  127 bits (319), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 102/336 (30%), Positives = 163/336 (48%), Gaps = 51/336 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQ------------------------- 35
           + +L GG S+EREVS+ S ++   A+    F V                           
Sbjct: 6   LILLYGGRSAEREVSVLSAESVMRAINYDKFFVKTYFITQVGQFIKTQEFDEMPSSDEKL 65

Query: 36  -----IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
                +D+D+ V     +    + F VLHG  GEDG +Q  LE+L +PY  + IL+S+++
Sbjct: 66  MTNQTVDLDKMVRPSDIYDDNAIVFPVLHGPMGEDGSIQGFLEVLRMPYVGTNILSSSVA 125

Query: 91  MDKMRSKQVVSSCGVPVCPSILVNRFTMDS-QHLI-------SPPYVIKPLKGGSSLGII 142
           MDK+ +KQV+++ GVP         F  D  +H I       S P  +KP   GSS+GI 
Sbjct: 126 MDKITTKQVLATVGVPQVA--YQTYFEGDDLEHAIKLSLETLSFPIFVKPANMGSSVGIS 183

Query: 143 VIKKDQSI--PLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKS 197
               + S+   +DL    +  +  ++LIEQ V   E+  G++G+  +  T   E+ V   
Sbjct: 184 KATDESSLRSAIDL----ALKYDSRILIEQGVTAREIEVGILGNNDVKTTFPGEV-VKDV 238

Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
           DFY Y+ KY     T  +PAK+     + +++ A  A +AIG  G+SR DF F     ++
Sbjct: 239 DFYDYDAKYIDNKITMDIPAKVDEATMEAMRQYASKAFKAIGACGLSRCDF-FLTKDGQI 297

Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           F  E+N  PG T  S++P +    G ++ +L+  +V
Sbjct: 298 FLNELNTMPGFTQWSMYPLLWENMGLTYSDLIEKLV 333


>gi|256113828|ref|ZP_05454621.1| D-alanine--D-alanine ligase/VANA/B/C [Brucella melitensis bv. 3
           str. Ether]
 gi|265995177|ref|ZP_06107734.1| D-alanine-D-alanine ligase A [Brucella melitensis bv. 3 str. Ether]
 gi|262766290|gb|EEZ12079.1| D-alanine-D-alanine ligase A [Brucella melitensis bv. 3 str. Ether]
          Length = 353

 Score =  127 bits (319), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 95/343 (27%), Positives = 168/343 (48%), Gaps = 55/343 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           + VL GG S+E +VS+ S     +AL+ A ++   + V R+   +L+             
Sbjct: 8   IVVLFGGRSAEHDVSVLSATNVMNALDPAKYEAVPVFVTRAGQWLLSRFVNGALEKPSSG 67

Query: 50  --------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                     K D+ F VLHG  GEDG VQ + ++  +P    G
Sbjct: 68  AELCLVPGGCGRAIVVPDAGAPYEADKIDIIFPVLHGLHGEDGAVQGLAQVARVPLAGCG 127

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSL 139
           I  SA ++DK  +K++V+  G+    S+ + R  + +    +  +  P  IKP + G+S+
Sbjct: 128 IPGSANALDKDIAKRLVNEAGLSTAKSVTITREEVPAFSALEQALGLPIFIKPARQGASV 187

Query: 140 GI--IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD--ASLDVTEIA-- 193
           G+  +V + D    +    S  + + D+LL E+++   E+ CGV+ D   +L V+     
Sbjct: 188 GVHKVVTEADYQAAM----SDGFIYDDKLLAEEFIQAREVECGVLEDEGGALFVSRAGEI 243

Query: 194 VPKSD--FYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
           VP     FYSY+ KY   + T + +PA++P  +  E++ +A  A + +GC  ++R DF F
Sbjct: 244 VPAESHCFYSYDAKYIDADGTEIKVPAELPEQVENEIRAIAAKAFRVLGCDSMARVDF-F 302

Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
               R++   EIN  PG T +S++ ++ A +G S+ E++  +V
Sbjct: 303 VTADRRIVLNEINTIPGFTDMSMYSKVMAVSGVSYPEIINRLV 345


>gi|219667711|ref|YP_002458146.1| D-alanine--D-lactate ligase [Desulfitobacterium hafniense DCB-2]
 gi|219537971|gb|ACL19710.1| D-alanine/D-alanine ligase [Desulfitobacterium hafniense DCB-2]
          Length = 341

 Score =  127 bits (319), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 105/336 (31%), Positives = 160/336 (47%), Gaps = 47/336 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASAL----------------------------EDAGFK 32
           +A++ GG S E  VS+ S    A  L                            E    +
Sbjct: 6   IAIIFGGCSEEHPVSVKSAGEVAKNLDLEKYEPFYIGITKDGVWQLCHYPEANWEKGSCR 65

Query: 33  VSQIDVDRSV-GLVL------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
            + +  DRSV GL++        +  DL F VLHG FGEDG +Q +LEL  IPY    I 
Sbjct: 66  PAILSPDRSVQGLLVLEQGQYQRIPLDLVFPVLHGKFGEDGAIQGLLELSGIPYVGCDIP 125

Query: 86  ASALSMDKMRSKQVVSSCGVPVCP-SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
           +SAL MDK  +  V    G+       +  + T+D++ L  P YV KP + GSS G+  +
Sbjct: 126 SSALCMDKSLAYIVAGKAGIATPKFRTVTAKETIDAERLAYPVYV-KPARSGSSFGVTKV 184

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD----ASLDVTEIAVPKSDFY 200
            + + + L  ++ +   +  ++LIE+ V G E+ C + G+     + +V +I +    F 
Sbjct: 185 CRQEEL-LSAVEIAR-QYDSKVLIEEAVVGSEVGCAIFGNDLDLMAGEVDQICLSHGFFR 242

Query: 201 SY---ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
            +   E +  S NST ++PA I  +    VQ  A   ++A+GCRG++R D +F      V
Sbjct: 243 IHQENEPEKGSENSTLIVPADISPEARSRVQETAKAIYRALGCRGLARVD-MFLKEDGTV 301

Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
              E+N  PGMT  S FP M A AG  F E++  +V
Sbjct: 302 ILNEVNTLPGMTSYSRFPRMMAAAGLPFAEVIDRLV 337


>gi|261343730|ref|ZP_05971375.1| D-alanine--D-alanine ligase A [Providencia rustigianii DSM 4541]
 gi|282568113|gb|EFB73648.1| D-alanine--D-alanine ligase A [Providencia rustigianii DSM 4541]
          Length = 367

 Score =  127 bits (319), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 100/350 (28%), Positives = 167/350 (47%), Gaps = 63/350 (18%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD--------------------- 39
           + V+ GG S+E EVSL S K   + L+   F V  I ++                     
Sbjct: 6   VGVIFGGKSTEHEVSLQSAKNIINGLDRNKFDVCLIGINKEGQWHEYDEANFLVHGDDPA 65

Query: 40  --------RSVGLV----------LAHLKP----DLAFNVLHGNFGEDGLVQAILELLEI 77
                   RS+ +V          L   KP    D+ F ++HGN GEDG +Q +L +  +
Sbjct: 66  HIALNTPKRSIAIVPGKQKEQFISLEDAKPLPQIDVIFPIVHGNLGEDGSLQGLLRMANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD------SQHLISPPYVIK 131
           P+   G+L S+  MDK  +K+++   G+ + P I + +   +      +   +  P  IK
Sbjct: 126 PFVGPGVLGSSACMDKDVTKRLLRDAGLNIAPFITILKSGREQISYAATVEKLGLPLFIK 185

Query: 132 PLKGGSSLGIIVIKKDQSI--PLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA---S 186
           P   GSS+GI  +  +      LD     ++    ++LIE  V G E+ C V+G+    +
Sbjct: 186 PANQGSSVGISKVNNESEFYAALDF----AFLFDVKVLIESAVKGREIECAVLGNEQPLA 241

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
               EI +  S FY+Y  KY   N   V+ PA +   + ++++++A  A+QA+ C G+SR
Sbjct: 242 SPCGEIVLHDS-FYAYHTKYIDENGASVVAPADLDEAVSEKIRQIALEAYQALNCSGMSR 300

Query: 246 SD-FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            D FL D  +  V   EIN  PG T +S++P++    G +++EL+  ++E
Sbjct: 301 VDVFLTD--TNDVVINEINTLPGFTNISMYPKLWQQGGMTYQELISRLIE 348


>gi|323483119|ref|ZP_08088511.1| hypothetical protein HMPREF9474_00260 [Clostridium symbiosum
           WAL-14163]
 gi|323403539|gb|EGA95845.1| hypothetical protein HMPREF9474_00260 [Clostridium symbiosum
           WAL-14163]
          Length = 355

 Score =  127 bits (319), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 84/262 (32%), Positives = 132/262 (50%), Gaps = 18/262 (6%)

Query: 43  GLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS 102
           G  +  +K D AF VLHG +GEDG +Q + EL ++PY   G+LASA+SMDK  +K +   
Sbjct: 86  GTGIEKIKVDGAFPVLHGLYGEDGTIQGLFELAKLPYVGCGVLASAVSMDKFFTKIIADR 145

Query: 103 CGV------PVCPSILVNRFTMDS-----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
            GV      PV    +     M       +   + P  IKP   GSS G+   +  + + 
Sbjct: 146 VGVRQAAYEPVMKEEIAGTEGMAEAVKRVEARFAYPVFIKPSNAGSSRGVSKAENREQLT 205

Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK----SDFYSYELKYS 207
             L +++   H  ++L+E+ + G E+ C V G+    V    V +    ++FY +E KY 
Sbjct: 206 EGLTEAA--RHDRKILVEETIVGHEIECAVFGNGKEPVIASGVGEVLAAAEFYDFEAKYF 263

Query: 208 SLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPG 267
           +  S  V+  ++P D  + V+R A    +A+   G++R DF F      V + EIN  PG
Sbjct: 264 NAESRTVVNPELPGDSAERVRRAAVEIFKAVDGYGLARVDF-FVTKDGDVVFNEINTMPG 322

Query: 268 MTPVSIFPEMAAYAGYSFRELL 289
            T +S++P +   AG S  EL+
Sbjct: 323 FTAISMYPMLFEAAGISKTELV 344


>gi|332361733|gb|EGJ39537.1| D-alanine-D-alanine ligase [Streptococcus sanguinis SK1056]
          Length = 353

 Score =  127 bits (319), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 101/340 (29%), Positives = 168/340 (49%), Gaps = 46/340 (13%)

Query: 3   VLMGGISSEREVSLSSGKACASAL-------------EDAGFKVSQ-------------- 35
           +L GG S+EREVS+ S ++   A+             +D  F  +Q              
Sbjct: 13  LLYGGRSAEREVSVLSAESVMRAVNYDRFSVKTYFITKDGDFIQTQEFEANPAADEKLMT 72

Query: 36  ---IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
              +D+ R +     +    + F VLHG  GEDG +Q  LE+L++PY    IL+S+L+MD
Sbjct: 73  NATVDMSRKIKPSDIYEDGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNILSSSLAMD 132

Query: 93  KMRSKQVVSSCGVPVCPSI-LVNRFTMDS-----QHLISPPYVIKPLKGGSSLGIIVIKK 146
           K+ +K+V+ S G+   P + LV+   ++      +  ++ P   KP   GSS+GI   K 
Sbjct: 133 KITTKRVLESAGIAQVPYVALVDGEDLEQKIQEIEEKLTYPVFTKPSNMGSSVGI--SKS 190

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYE 203
           +    L      ++ +  ++L+EQ V   E+  G++G+  +  T   E+ V    FY YE
Sbjct: 191 ENQAELRASLDLAFKYDSRVLVEQGVTAREIEVGLLGNVDVKSTLPGEV-VKDVAFYDYE 249

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            KY     T  +PAKIP ++   +++ A  A +A+G  G+SR DF +     +VF  E+N
Sbjct: 250 AKYIDNKITMDIPAKIPEEVVSLMRQNAETAFRALGGLGLSRCDFFYTE-DGQVFLNELN 308

Query: 264 VQPGMTPVSIFPEMAAYAGYSFREL---LLWMVEDASCLR 300
             PG T  S++P +    G ++ +L   L+ + E+A   R
Sbjct: 309 TMPGFTQWSMYPLLWENMGLAYPDLIEKLVGLAEEAFAKR 348


>gi|324324244|gb|ADY19504.1| D-alanyl-alanine synthetase A [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 361

 Score =  127 bits (319), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 94/338 (27%), Positives = 163/338 (48%), Gaps = 52/338 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------DRSVGLVL----- 46
           + +L GG S+E +VSL +  A   AL    F++  I +         +R  G V      
Sbjct: 6   LGLLYGGKSAEHQVSLQTALAAIKALNQDKFEIHPIYITEQGQWVRGERIEGEVTDVEVL 65

Query: 47  ---------------AHLKP---------DLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
                            + P         D+ F +LHG  GEDG VQ +LEL+ IPY  +
Sbjct: 66  KMSGAENAISPLSLSTEIIPSANAEENAIDVIFPLLHGPNGEDGTVQGLLELMNIPYVGN 125

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCP--SILVNRFTMDS-------QHLISPPYVIKPL 133
           G+LASA  MDK+  K + +  G+      S + + +  D        + ++  P  +KP 
Sbjct: 126 GVLASAAGMDKVVMKNIFAEAGLKQAKYASFIRSAWEKDRETAYEKVEEVLGYPCFVKPA 185

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
             GSS+GI   K  + +     ++  ++   ++++E+ + G E+  GV+G+     + + 
Sbjct: 186 NLGSSVGINKCKNREELENAFEEAFQFDR--KIIVEENIVGREVEVGVLGNDEPKCSVVG 243

Query: 194 --VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
             VPK DFY Y+ KY   ++  ++PA++  +    ++R A +A Q++   G++R+DF F 
Sbjct: 244 EIVPKKDFYDYKSKYIDGDTALIIPAEMTEEESNVIKRDAIVAFQSLDGAGLTRADF-FL 302

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
               +V+  E+N  PG TP S+FP +  + G  + EL+
Sbjct: 303 TKDGEVYINEVNTMPGFTPFSMFPLLWQHTGLPYPELI 340


>gi|306829917|ref|ZP_07463104.1| D-alanine-D-alanine ligase [Streptococcus mitis ATCC 6249]
 gi|304427928|gb|EFM31021.1| D-alanine-D-alanine ligase [Streptococcus mitis ATCC 6249]
          Length = 372

 Score =  127 bits (319), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 98/331 (29%), Positives = 160/331 (48%), Gaps = 43/331 (12%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKV----------------------------- 33
           +L GG S+EREVS+ S ++   A+    F V                             
Sbjct: 32  LLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDFIKTQEFSQTPGQEDRLMT 91

Query: 34  -SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
            + ID D+ +     + +  + F VLHG  GEDG VQ  LE+L++PY    IL+S+L+MD
Sbjct: 92  NATIDWDKKIAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLAMD 151

Query: 93  KMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           K+ +K+V+ S G+   P +       V     + +  ++ P   KP   GSS+GI   K 
Sbjct: 152 KITTKRVLESVGIAQVPYVAIVEGDDVTAKIAEVEEKLTYPVFTKPSNMGSSVGI--SKS 209

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYE 203
           +    L      ++ +  ++L+EQ V+  E+  G++G+  +  T   E+ V    FY Y+
Sbjct: 210 ENHEELRQALELAFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVAFYDYD 268

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            KY     T  +PAKI  D+   ++  A  A +AIG  G+SR DF +     ++F  E+N
Sbjct: 269 AKYIDNKITMDIPAKISDDVVAVMRHNAETAFRAIGGLGLSRCDFFYTDKG-EIFLNELN 327

Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             PG T  S++P +    G S+ +L+  +V+
Sbjct: 328 TMPGFTQWSMYPLLWDNMGISYPDLIERLVD 358


>gi|6624709|emb|CAB63849.1| D-ala,D-ala ligase [Streptococcus pneumoniae]
          Length = 347

 Score =  127 bits (319), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 98/331 (29%), Positives = 160/331 (48%), Gaps = 43/331 (12%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKV----------------------------- 33
           +L GG S+EREVS+ S ++   A++   F V                             
Sbjct: 7   LLYGGRSAEREVSVLSAESVMRAVDYDRFTVKTFFISQSGDFIKTQEFSHAPGQEDRLMT 66

Query: 34  -SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
              ID D+ V     + +  + F VLHG  GEDG VQ  LE+L++PY    IL+S+L+MD
Sbjct: 67  NETIDWDKKVAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLAMD 126

Query: 93  KMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           K+ +K+V+ S G+   P +       V     + +  ++ P   KP   G S+GI   K 
Sbjct: 127 KITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLAYPVFTKPSNMGCSVGI--SKS 184

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYE 203
           +    L      ++ +  ++L+EQ V+  E+  G++G+  +  T   E+ V    FY Y+
Sbjct: 185 ENQEELRQALKLAFRYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVAFYDYD 243

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            KY     T  +PAKI  D+   +++ A  A +AIG  G+SR +F +     ++F  E+N
Sbjct: 244 AKYIDNKVTMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCNFFYTDKG-EIFLNELN 302

Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             PG T  S++P +    G S+ EL+  +V+
Sbjct: 303 TMPGFTQWSMYPLLWENMGISYPELIERLVD 333


>gi|228983491|ref|ZP_04143701.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228776235|gb|EEM24591.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 361

 Score =  127 bits (319), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 94/338 (27%), Positives = 163/338 (48%), Gaps = 52/338 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------DRSVGLVL----- 46
           + +L GG S+E +VSL +  A   AL    F++  I +         +R  G V      
Sbjct: 6   LGLLYGGKSAEHQVSLQTALAAIKALNQDKFEIHPIYITEQGQWVRGERIEGEVTDVEVL 65

Query: 47  ---------------AHLKP---------DLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
                            + P         D+ F +LHG  GEDG VQ +LEL+ IPY  +
Sbjct: 66  KMSGAENAISPLSLSTEIIPSANAEENAIDVIFPLLHGPNGEDGTVQGLLELMNIPYVGN 125

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCP--SILVNRFTMDS-------QHLISPPYVIKPL 133
           G+LASA  MDK+  K + +  G+      S + + +  D        + ++  P  +KP 
Sbjct: 126 GVLASAAGMDKVVMKNIFAEAGLKQAKYASFIRSAWEKDRETAYEKVEEVLGYPCFVKPA 185

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
             GSS+GI   K  + +     ++  ++   ++++E+ + G E+  GV+G+     + + 
Sbjct: 186 NLGSSVGINKCKNREELENAFEEAFQFDR--KIIVEENIVGREVEVGVLGNDEPKCSVVG 243

Query: 194 --VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
             VPK DFY Y+ KY   ++  ++PA++  +    ++R A +A Q++   G++R+DF F 
Sbjct: 244 EIVPKKDFYDYKSKYIDGDTALIIPAEMTEEESNVIKRDAIVAFQSLDGAGLTRADF-FL 302

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
               +V+  E+N  PG TP S+FP +  + G  + EL+
Sbjct: 303 TKDGEVYINEVNTMPGFTPFSMFPLLWQHTGLPYPELI 340


>gi|224534249|ref|ZP_03674827.1| D-alanine--D-alanine ligase [Borrelia spielmanii A14S]
 gi|224514351|gb|EEF84667.1| D-alanine--D-alanine ligase [Borrelia spielmanii A14S]
          Length = 361

 Score =  127 bits (319), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 87/344 (25%), Positives = 171/344 (49%), Gaps = 50/344 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAG-FKVSQIDVDRSVGL--------------- 44
           + ++ GG+S E E+S  S  +   AL D   + +  + +D+  G+               
Sbjct: 5   LMLIFGGVSFEHEISCKSAYSIYLALLDLNKYNIYPVYIDKCSGIWYLLDSVSDPPNPIN 64

Query: 45  --VL---------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87
             VL                +L  D+ F V+HG  GEDG +Q +L++++IP   +GI+ S
Sbjct: 65  TDVLPIVSLLPGLGIFSNNKNLDIDVVFPVVHGRTGEDGAIQGVLKVMDIPCVGAGIMGS 124

Query: 88  ALSMDKMRSKQVVSSCGVPVCPSILVNR--FTMDSQHL-------ISPPYVIKPLKGGSS 138
           A+S +K   K ++ S  +P+ P I   +  + +D + +       +  P ++KP   GSS
Sbjct: 125 AISSNKYFCKLLLKSFNIPIVPFIGFRQHDYFLDKEEVKKNVKESLGYPVIVKPAVLGSS 184

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV---TEIAVP 195
           +GI V   +  I   + ++  ++    ++IE++++  E+ C ++G+  + +    E+ V 
Sbjct: 185 IGINVAYSENQIESFIEEALKYDL--TIVIEKFIEAREIECSIIGNEKMKIFSPGEVVVQ 242

Query: 196 KSDFYSYELKYSSLNSTHV---LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
              FY Y+ KYS +    +   +PA +  +    ++  AFL ++ +  RG++R DF  + 
Sbjct: 243 DFIFYDYDAKYSVIPGNSIIFNIPAHLETNQLLSIKEYAFLVYKNLELRGMARVDFFVEK 302

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            S  ++  EIN  PG T +S+F +M ++ G  F++L+  +++ A
Sbjct: 303 KSGVIYLNEINTIPGFTDISMFAKMCSHDGLQFKDLVDNLIDYA 346


>gi|88802384|ref|ZP_01117911.1| D-alanylalanine synthetase [Polaribacter irgensii 23-P]
 gi|88781242|gb|EAR12420.1| D-alanylalanine synthetase [Polaribacter irgensii 23-P]
          Length = 324

 Score =  127 bits (319), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 92/318 (28%), Positives = 161/318 (50%), Gaps = 36/318 (11%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           +A++MGG SSE ++S+ SG      L+   +   ++ +     + L              
Sbjct: 5   IAIIMGGYSSEADISIKSGNVVYDNLDKEKYTAYRVLISTEKWVALDADGTAYPIDKNNF 64

Query: 47  ------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
                 A +  D  FN +HG  GE+G + A   L+ + +T +     AL+ +K  +  VV
Sbjct: 65  SFLLQDASILFDCVFNAIHGAPGENGELLAYFNLINLKHTSASFYQMALTYNKRDTLCVV 124

Query: 101 SSCGVPVCPSILVNR-FTMDSQHLISP---PYVIKPLKGGSSLGI-IVIKKDQSIPLDLL 155
            + G+    ++ +N+   +D   +I+    P  IKP K GSS GI  V  ++  +P   L
Sbjct: 125 KAYGIQTATAVYLNKGAAIDLDTIIAKVGLPCFIKPNKAGSSFGISKVYSREAILPAIAL 184

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMG----DASLDVTEIAVPKSDFYSYELKYSSLNS 211
              ++    ++LIE ++ GIE++ GV+        L +TEI V ++DF+ Y+ KY+   S
Sbjct: 185 ---AYKEDSEILIESFLKGIEVSVGVISYQGVTTVLPITEI-VSENDFFDYDAKYNG-KS 239

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271
             + PA+I  +  K+V+  A   ++ +   G SRS+F+F  ++ + ++LEIN+ PG+T  
Sbjct: 240 KEITPARITKEQRKKVEEAAKNVYEILNLTGFSRSEFIF--VNEEPYFLEINMVPGLTTQ 297

Query: 272 SIFPEMAAYAGYSFRELL 289
           SI P+ A  AG S  +L 
Sbjct: 298 SILPQQALAAGISLADLF 315


>gi|323453883|gb|EGB09754.1| hypothetical protein AURANDRAFT_24617 [Aureococcus anophagefferens]
          Length = 317

 Score =  127 bits (319), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 89/301 (29%), Positives = 153/301 (50%), Gaps = 20/301 (6%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+ER++SL  G   A AL   G++V+ +D+  ++ LV A  + D+ F  LHG
Sbjct: 11  IAVLCGGTSAERDLSLKGGADVAEALRARGYRVTIVDLTPALDLVAALRRVDVVFVCLHG 70

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG VQ  LE+L+IPYT SG++  ++ +DK+R+K+ +  C  PV   ++ ++   D 
Sbjct: 71  PLGEDGSVQGFLEVLKIPYTFSGVVTQSVCVDKVRTKRYLRGCE-PV--RLIPDQLLADG 127

Query: 121 QHL-ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
             L + PP ++K  + GSS G  V K D +   ++  +++   G + L+EQ++ G++L  
Sbjct: 128 APLRVPPPCMVKDPQSGSSRG--VWKCDTAD--EVRAAAAQCAGPRCLVEQFISGVDLVV 183

Query: 180 GVMGDASLDVTEIAV--------PKSDFYSYELKYSSLNST----HVLPAKIPLDIYKEV 227
            V    +L   E            K+D + +     S  +      + PA +P  +  E 
Sbjct: 184 CVNDGEALPAMEFKTDKDWQDLASKNDLWGWAGADGSDGARAAIEKICPATLPAAVVDEA 243

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287
           +  A   +  +   G    +F        V+++E++  P MT  S+    A  AG SF +
Sbjct: 244 RDTALAIYDFLEVEGAMNFEFRVTVDGAAVYFVEVSSVPAMTRASVHACCAEAAGLSFED 303

Query: 288 L 288
           +
Sbjct: 304 V 304


>gi|229154005|ref|ZP_04282134.1| D-alanine--D-alanine ligase [Bacillus cereus ATCC 4342]
 gi|228629526|gb|EEK86224.1| D-alanine--D-alanine ligase [Bacillus cereus ATCC 4342]
          Length = 361

 Score =  127 bits (319), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 95/338 (28%), Positives = 163/338 (48%), Gaps = 52/338 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------DRSVGLVL----- 46
           + +L GG S+E +VSL +  A   AL    F++  I +         +R  G V      
Sbjct: 6   LGLLYGGKSAEHQVSLQTALAAIKALNQDKFEIHPIYITEQGQWVRGERIEGEVTDVEVL 65

Query: 47  ---------------AHLKP---------DLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
                            + P         D+ F +LHG  GEDG VQ +LEL+ IPY  +
Sbjct: 66  KMSGAENAISPLSLSTEIIPSANAEENAIDVIFPLLHGPNGEDGTVQGLLELMNIPYVGN 125

Query: 83  GILASALSMDKMRSKQVVSSCGVP-------VCPSILVNRFTM--DSQHLISPPYVIKPL 133
           G+LASA  MDK+  K + +  G+        +  +   NR T     + ++  P  +KP 
Sbjct: 126 GVLASAAGMDKVVMKNIFAEAGLKQAKYASFIRSAWEKNRETAYEKVEEVLGYPCFVKPA 185

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
             GSS+GI   K  + +     ++  ++   ++++E+ + G E+  GV+G+     + + 
Sbjct: 186 NLGSSVGINKCKNREELENAFEEAFQFDR--KIIVEENIVGREVEVGVLGNDEPKCSVVG 243

Query: 194 --VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
             VPK DFY Y+ KY   ++  ++PA++  +    ++R A +A Q++   G++R+DF F 
Sbjct: 244 EIVPKKDFYDYKSKYIDGDTALIIPAEMTEEESNVIKRDAIVAFQSLDGAGLTRADF-FL 302

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
               +V+  E+N  PG TP S+FP +  + G  + EL+
Sbjct: 303 TKDGEVYINEVNTMPGFTPFSMFPLLWQHTGLPYPELI 340


>gi|254723573|ref|ZP_05185360.1| D-alanyl-alanine synthetase A [Bacillus anthracis str. A1055]
          Length = 377

 Score =  127 bits (318), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 77/253 (30%), Positives = 138/253 (54%), Gaps = 14/253 (5%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-- 109
           D+ F +LHG  GEDG VQ +LEL+ IPY  +G+LASA  MDK+  K + +  G+      
Sbjct: 95  DVIFPLLHGPNGEDGTVQGLLELMNIPYVGNGVLASAAGMDKVVMKNIFAEAGLKQAKYA 154

Query: 110 SILVNRFTMDS-------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
           S + + +  D        + ++  P  +KP   GSS+GI   K  + +     ++  ++ 
Sbjct: 155 SFIRSGWEKDRETAYEKVEEVLGYPCFVKPANLGSSVGINKCKNREELENAFEEAFQFDR 214

Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVTEIA--VPKSDFYSYELKYSSLNSTHVLPAKIP 220
             ++++E+ + G E+  GV+G+     + +   VPK DFY Y+ KY   ++  ++PA++ 
Sbjct: 215 --KIIVEENIIGREVEVGVLGNDEPKCSVVGEIVPKKDFYDYKSKYIDGDTALIIPAEMT 272

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280
            +    ++R A +A Q++   G++R+DF F     +V+  E+N  PG TP S+FP +  +
Sbjct: 273 EEESNVIKRDAIVAFQSLDGAGLTRADF-FLTKDGEVYINEVNTMPGFTPFSMFPLLWQH 331

Query: 281 AGYSFRELLLWMV 293
            G  + EL+  ++
Sbjct: 332 TGLPYPELIEELI 344


>gi|206977073|ref|ZP_03237973.1| D-alanine--D-alanine ligase [Bacillus cereus H3081.97]
 gi|217957805|ref|YP_002336349.1| D-alanyl-alanine synthetase A [Bacillus cereus AH187]
 gi|229137075|ref|ZP_04265699.1| D-alanine--D-alanine ligase [Bacillus cereus BDRD-ST26]
 gi|229194622|ref|ZP_04321419.1| D-alanine--D-alanine ligase [Bacillus cereus m1293]
 gi|206744722|gb|EDZ56129.1| D-alanine--D-alanine ligase [Bacillus cereus H3081.97]
 gi|217064959|gb|ACJ79209.1| D-alanine--D-alanine ligase [Bacillus cereus AH187]
 gi|228588843|gb|EEK46864.1| D-alanine--D-alanine ligase [Bacillus cereus m1293]
 gi|228646382|gb|EEL02592.1| D-alanine--D-alanine ligase [Bacillus cereus BDRD-ST26]
          Length = 361

 Score =  127 bits (318), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 94/338 (27%), Positives = 163/338 (48%), Gaps = 52/338 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------DRSVGLVL----- 46
           + +L GG S+E +VSL +  A   AL    F++  I +         +R  G V      
Sbjct: 6   LGLLYGGKSAEHQVSLQTALAAIKALNQDKFEIHPIYITEQGQWVRGERIEGEVTDVEVL 65

Query: 47  ---------------AHLKP---------DLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
                            + P         D+ F +LHG  GEDG VQ +LEL+ IPY  +
Sbjct: 66  KMSGAENAISPLSLSTEIIPSANAEENAIDVIFPLLHGPNGEDGTVQGLLELMNIPYVGN 125

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCP--SILVNRFTMDS-------QHLISPPYVIKPL 133
           G+LASA  MDK+  K + +  G+      S + + +  D        + ++  P  +KP 
Sbjct: 126 GVLASAAGMDKVVMKNIFAEAGLKQAKYASFIRSGWEKDRETAYEKVEEVLGYPCFVKPA 185

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
             GSS+GI   K  + +     ++  ++   ++++E+ + G E+  GV+G+     + + 
Sbjct: 186 NLGSSVGINKCKNREELENAFEEAFQFDR--KIIVEENIVGREVEVGVLGNDEPKCSVVG 243

Query: 194 --VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
             VPK DFY Y+ KY   ++  ++PA++  +    ++R A +A Q++   G++R+DF F 
Sbjct: 244 EIVPKKDFYDYKSKYIDGDTALIIPAEMTEEESNVIKRDAIVAFQSLDGAGLTRADF-FL 302

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
               +V+  E+N  PG TP S+FP +  + G  + EL+
Sbjct: 303 TKDGEVYINEVNTMPGFTPFSMFPLLWQHTGLPYPELI 340


>gi|332880023|ref|ZP_08447707.1| D-ala D-ala ligase protein [Capnocytophaga sp. oral taxon 329 str.
           F0087]
 gi|332682019|gb|EGJ54932.1| D-ala D-ala ligase protein [Capnocytophaga sp. oral taxon 329 str.
           F0087]
          Length = 337

 Score =  127 bits (318), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 94/322 (29%), Positives = 155/322 (48%), Gaps = 34/322 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------------------- 40
           +A++MGG S E  VSL S +  A+ L    +    + +DR                    
Sbjct: 16  IAIIMGGYSDEAPVSLKSARVVANHLNKEKYTPYLVRIDRDKWVYVDEQNAEYPINRNDF 75

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           SV +    +  +  FN +HG  GEDG +QA   L+ +P T   + ASAL+ +K     V+
Sbjct: 76  SVVINGQKITFEAVFNAIHGTPGEDGYLQAYFNLIGVPLTGCSMYASALTFNKRDMLSVL 135

Query: 101 SSCGVPVCPSILVNR----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
              G+   PS  +N+     T D    +  P  +KP K GSSLG    K ++   L    
Sbjct: 136 KPFGILSAPSYYLNKGENYSTADIVAKVGLPCFVKPNKAGSSLG--ASKVNEEAALKEAI 193

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDAS----LDVTEIAVPKSDFYSYELKYSSLNST 212
             ++   D++LIE ++ G E++ GV+        L +TEI V ++DF+ Y+ KY+   S 
Sbjct: 194 DKAFAVDDEILIESFLKGTEISIGVIKYRGVIKVLPMTEI-VSENDFFDYDAKYNG-KSQ 251

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
            + PA+I  ++  ++  LA   ++ +   G SRS+F+   +    + LE+N  PG++  S
Sbjct: 252 EITPARISEEMTAKINALAERVYRLLKMEGFSRSEFII--VGDTPYLLEMNTTPGLSEAS 309

Query: 273 IFPEMAAYAGYSFRELLLWMVE 294
           + P+ A  AG S  +L    +E
Sbjct: 310 LLPQQAKVAGISLADLFESEIE 331


>gi|222094005|ref|YP_002528056.1| d-alanyl-alanine synthetase a [Bacillus cereus Q1]
 gi|221238054|gb|ACM10764.1| D-alanine--D-alanine ligase [Bacillus cereus Q1]
          Length = 361

 Score =  127 bits (318), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 94/338 (27%), Positives = 163/338 (48%), Gaps = 52/338 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------DRSVGLVL----- 46
           + +L GG S+E +VSL +  A   AL    F++  I +         +R  G V      
Sbjct: 6   LGLLYGGKSAEHQVSLQTALAAIKALNQDKFEIHPIYITEQGQWVRGERIEGEVTDVEIL 65

Query: 47  ---------------AHLKP---------DLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
                            + P         D+ F +LHG  GEDG VQ +LEL+ IPY  +
Sbjct: 66  KMSGAENAISPLSLSTEIIPSANAEENAIDVIFPLLHGPNGEDGTVQGLLELMNIPYVGN 125

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCP--SILVNRFTMDS-------QHLISPPYVIKPL 133
           G+LASA  MDK+  K + +  G+      S + + +  D        + ++  P  +KP 
Sbjct: 126 GVLASAAGMDKVVMKNIFAEAGLKQAKYASFIRSGWEKDRETAYEKVEEVLGYPCFVKPA 185

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
             GSS+GI   K  + +     ++  ++   ++++E+ + G E+  GV+G+     + + 
Sbjct: 186 NLGSSVGINKCKNREELENAFEEAFQFDR--KIIVEENIVGREVEVGVLGNDEPKCSVVG 243

Query: 194 --VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
             VPK DFY Y+ KY   ++  ++PA++  +    ++R A +A Q++   G++R+DF F 
Sbjct: 244 EIVPKKDFYDYKSKYIDGDTALIIPAEMTEEESNVIKRDAIVAFQSLDGAGLTRADF-FL 302

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
               +V+  E+N  PG TP S+FP +  + G  + EL+
Sbjct: 303 TKDGEVYINEVNTMPGFTPFSMFPLLWQHTGLPYPELI 340


>gi|126696830|ref|YP_001091716.1| D-alanyl-alanine synthetase A [Prochlorococcus marinus str. MIT
           9301]
 gi|166198497|sp|A3PEE0|DDL_PROM0 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|126543873|gb|ABO18115.1| D-alanine--D-alanine ligase [Prochlorococcus marinus str. MIT 9301]
          Length = 355

 Score =  127 bits (318), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 93/345 (26%), Positives = 163/345 (47%), Gaps = 54/345 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALED---------AGFKVSQ----IDVDRSVGLVLA 47
           + ++ GG S+E EVS+SS K    A +            F +++    +D D S  ++  
Sbjct: 9   IGLIFGGHSNEHEVSISSAKTVFKAFKAQINRERFTVKAFYINKYGDWLDSDISEKILTG 68

Query: 48  HLKP-------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
            ++                          D+ F +LHG  GEDG +  ++   + P    
Sbjct: 69  EIENYKTKKQEIFNQEKINFLDGIEFQNIDVWFPLLHGFNGEDGSIHGLIRFTKKPLVGC 128

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP-----------PYVIK 131
           GI+ SAL MDK+  K + S+  +P    ++     ++ + + +            P  +K
Sbjct: 129 GIIGSALGMDKILMKTIFSNHKLPQVNYLVFQNEDLNDKQVKNKIINEILKKLKFPVFVK 188

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSSLGI  +K +  I L L    +W    ++LIE+ ++  E+ CG++G++ L  +E
Sbjct: 189 PSNSGSSLGISKVKNESEILLAL--EKAWGIDPRILIEEGLEVREIECGIIGNSKLITSE 246

Query: 192 IAVP--KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
           I     +SD+Y Y+ KY S N+  ++PA+I   I  E++ +A  + +A+   G +R DF 
Sbjct: 247 IGEVNYESDWYDYDSKYHS-NNKIIIPAEIDSKITNEIKEIAIKSCRALNIFGFARVDFF 305

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            +  S K+   EIN  PG T  S+FP +   +G    +L+  +V+
Sbjct: 306 LEKSSNKILLNEINTIPGFTKNSMFPMLWEASGLKIEQLVAKLVD 350


>gi|149021235|ref|ZP_01835481.1| D-alanylalanine synthetase [Streptococcus pneumoniae SP23-BS72]
 gi|147930336|gb|EDK81320.1| D-alanylalanine synthetase [Streptococcus pneumoniae SP23-BS72]
          Length = 347

 Score =  127 bits (318), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 99/332 (29%), Positives = 161/332 (48%), Gaps = 45/332 (13%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQ--------------------------- 35
           +L GG S+EREVS+ S ++   A+    F V                             
Sbjct: 7   LLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDFIKTQEFSHAPGQEDRLMT 66

Query: 36  ---IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
              ID D+ V     + +  + F VLHG  GEDG VQ  LE+L++PY    IL+S+L+MD
Sbjct: 67  NETIDWDKKVAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLAMD 126

Query: 93  KMRSKQVVSSCGVPVCPSILV-------NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145
           K+ +K+V+ S G+   P + +        +     + L+ P +  KP   GSS+GI   K
Sbjct: 127 KITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLVYPVFT-KPSNMGSSVGI--SK 183

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSY 202
            +    L      ++ +  ++L+EQ V+  E+  G++G+  +  T   E+ V    FY Y
Sbjct: 184 SENQEELRQALKLAFRYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVAFYDY 242

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
           + KY     T  +PAKI  D+   +++ A  A +AIG  G+SR DF +     ++F  E+
Sbjct: 243 DAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDFFYTDKG-EIFLNEL 301

Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           N  PG T  S++P +    G S+ +L+  +V+
Sbjct: 302 NTMPGFTQWSMYPLLWDNMGISYPKLIERLVD 333


>gi|325977796|ref|YP_004287512.1| D-alanyl-alanine synthetase A [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
 gi|325177724|emb|CBZ47768.1| D-alanyl-alanine synthetase A [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
          Length = 347

 Score =  127 bits (318), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 97/333 (29%), Positives = 159/333 (47%), Gaps = 43/333 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           + +L GG S+ER+VS+ S ++   A+    F V    + +S   +               
Sbjct: 6   LVLLYGGRSAERKVSVLSAESVMRAINYDKFFVKTYFITQSGDFIKTQEFSSKPADDEKL 65

Query: 49  -----------LKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
                      +KP        + F VLHG  GEDG +Q  LE+L++PY  + IL+S+++
Sbjct: 66  MTNATVVESQKIKPSDIYEEGAVVFPVLHGPMGEDGSIQGFLEILKMPYVGTNILSSSVA 125

Query: 91  MDKMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
           MDK+ +K V+ S GVP+   +       + +   +    ++ P  +KP   GSS+GI   
Sbjct: 126 MDKISTKHVLESAGVPLVAYVTYVEGADLEKAVAEVNEKLTYPVFVKPANMGSSVGI--S 183

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYS 201
           K D    L      +  +  ++LIE  V+  E+  G++G+A +  T   E+ V    FY 
Sbjct: 184 KADDEEGLRSAIDLALKYDSRILIETGVNAREIEVGILGNADVQTTLPGEV-VKDVAFYD 242

Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
           Y+ KY     T  +PA I   I +E++  A  A +AIG  G+SR DF        V+  E
Sbjct: 243 YDAKYIDNKITMDIPAHIDSSIMEEMRGYATTAFRAIGGCGLSRCDFFLTE-DGHVYLNE 301

Query: 262 INVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           +N  PG T  S++P +    G ++ +L+  +VE
Sbjct: 302 LNTMPGFTQWSMYPLLWENMGLAYSDLIEKLVE 334


>gi|291523552|emb|CBK81845.1| D-alanine--D-alanine ligase [Coprococcus catus GD/7]
          Length = 343

 Score =  127 bits (318), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 98/342 (28%), Positives = 159/342 (46%), Gaps = 55/342 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-------------------DRS 41
           + VL GGIS+ER+VSL SG     AL+  G +V  +DV                     S
Sbjct: 3   IVVLAGGISTERDVSLVSGMGIYKALKSKGHQVMLLDVFLGYANEDWKNVFEKDVDWTAS 62

Query: 42  VGLV---------LAHLKPD------------------LAFNVLHGNFGEDGLVQAILEL 74
           VG +         +  L+PD                  + F  LHG  GE+G +QA  +L
Sbjct: 63  VGAIKDQNPDIDAVKALRPDWKKNFFGPHVIDICQQADVVFMALHGENGENGKIQACFDL 122

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPY--VIKP 132
             I YT +  ++SA+ M+K  SK + ++ GVP    I   R        +  PY  V+K 
Sbjct: 123 NGIRYTGTDYVSSAICMNKAISKDLFAAGGVPTPVGI---RLKKGETPDVKVPYPCVVKA 179

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192
             GGSS+G+++   D+          ++ + ++++IEQY+ G E + GV+   +  + EI
Sbjct: 180 CCGGSSVGVVMANNDEE--YAAALEEAFKYDEEVVIEQYIKGREFSVGVVDGKAYPIIEI 237

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
           A P   FY Y+ KY + ++    PA++  +    +Q  A  A + +  +  +R DF+ D 
Sbjct: 238 A-PIHGFYDYKNKYQAGSTIETCPAELSEEKTLAMQAAAEQAFKVLRLKNYARMDFMMDE 296

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
                + LE N  PGMTP S+ P+ A   G  + +L   +++
Sbjct: 297 -KEDFYCLEANTLPGMTPTSLLPQEAKVLGIEYADLCQLLID 337


>gi|196041059|ref|ZP_03108355.1| D-alanine--D-alanine ligase [Bacillus cereus NVH0597-99]
 gi|196027994|gb|EDX66605.1| D-alanine--D-alanine ligase [Bacillus cereus NVH0597-99]
          Length = 361

 Score =  127 bits (318), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 77/249 (30%), Positives = 136/249 (54%), Gaps = 14/249 (5%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-- 109
           D+ F +LHG  GEDG VQ +LEL+ IPY  +G+LASA  MDK+  K + +  G+      
Sbjct: 95  DVIFPLLHGPNGEDGTVQGLLELMNIPYVGNGVLASAAGMDKVVMKNIFAEAGLKQAKYA 154

Query: 110 SILVNRFTMDS-------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
           S + + +  D        + ++  P  +KP   GSS+GI   K  + +     ++  ++ 
Sbjct: 155 SFIRSGWEKDRETAYEKVEEVLGYPCFVKPANLGSSVGINKCKNREELENAFEEAFQFDR 214

Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVTEIA--VPKSDFYSYELKYSSLNSTHVLPAKIP 220
             ++++E+ + G E+  GV+G+     + +   VPK DFY Y+ KY   ++  ++PA++ 
Sbjct: 215 --KIIVEENIIGREVEVGVLGNDEPKCSVVGEIVPKKDFYDYKSKYIDGDTALIIPAEMT 272

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280
            +    ++R A +A Q++   G++R+DF F     +V+  E+N  PG TP S+FP +  +
Sbjct: 273 EEESNVIKRDAIVAFQSLDGAGLTRADF-FLTKDGEVYINEVNTMPGFTPFSMFPLLWQH 331

Query: 281 AGYSFRELL 289
            G  + EL+
Sbjct: 332 TGLPYPELI 340


>gi|89896436|ref|YP_519923.1| hypothetical protein DSY3690 [Desulfitobacterium hafniense Y51]
 gi|89335884|dbj|BAE85479.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 353

 Score =  127 bits (318), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 87/250 (34%), Positives = 133/250 (53%), Gaps = 12/250 (4%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-S 110
           DL F VLHG FGEDG VQ +LEL  IPY    I +SAL MDK  +  V  + G+      
Sbjct: 92  DLVFPVLHGKFGEDGAVQGLLELSGIPYVGCDIPSSALCMDKSLAYIVAGNAGIATPKFR 151

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +  +  +D++ L  P YV KP + GSS G+  + + + +   +  +S ++   ++LIE+
Sbjct: 152 TVTAKEAIDAERLAYPVYV-KPARSGSSFGVTKVCRQEELLSAVAIASQYD--SKVLIEE 208

Query: 171 YVDGIELTCGVMGD----ASLDVTEIAVPKSDFYSY---ELKYSSLNSTHVLPAKIPLDI 223
            V G E+ C + G+     + +V +I +    F  +   E +  S NST ++PA I    
Sbjct: 209 AVIGTEVGCAIFGNDLDLMAGEVDQIRLSHGFFRIHQENEPEKGSENSTLIVPADISPQA 268

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283
              VQ  A   ++A+GC+G++R D +F     +V   E+N  PGMT  S FP M A AG 
Sbjct: 269 RSRVQETAKAIYRALGCKGLARVD-MFLKEDGEVILNEVNTLPGMTSYSRFPRMMAAAGL 327

Query: 284 SFRELLLWMV 293
            F E++  +V
Sbjct: 328 PFAEVIDRLV 337


>gi|329895282|ref|ZP_08270924.1| D-alanine--D-alanine ligase [gamma proteobacterium IMCC3088]
 gi|328922404|gb|EGG29747.1| D-alanine--D-alanine ligase [gamma proteobacterium IMCC3088]
          Length = 310

 Score =  127 bits (318), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 99/296 (33%), Positives = 148/296 (50%), Gaps = 8/296 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG SSEREVSL SG      L     +V  +D   S  L       D  FN+LHG
Sbjct: 11  VAVLLGGTSSEREVSLMSGATVVDNLAPLCAQVRSVDPVNSNWLEQLD-GVDFVFNILHG 69

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GE+G VQ +L  L +P + SG+L +AL MDK+RSK +    G+PV  + ++   T D 
Sbjct: 70  GSGENGSVQGLLATLGLPQSGSGVLGAALGMDKLRSKAIWRDAGLPVAEAAVLASDT-DF 128

Query: 121 QHLISP--PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           + +I       +KP   GSS+G+ +    + +      +S +     +  E+ + G E T
Sbjct: 129 EAVIQSLGEVFVKPAYEGSSIGMSIASSAEELAQAYKSASEYQ--GPVFAERRIVGEEYT 186

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             ++GD +L    +   +  FY Y  KY S ++ +  P  +  +   E+  LA  A +AI
Sbjct: 187 VAILGDRALPAIRLQAHEI-FYDYHAKYVSNDTQYFCPCGLSKEREAELADLALAAFKAI 245

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            C    R DF+ D   +  + LE N  PGMT  S+ P  A  AG S + LL  ++E
Sbjct: 246 DCAVWGRVDFMVDQQGQP-YILEANTVPGMTSHSLVPMAAKAAGLSVQGLLREIIE 300


>gi|49476748|ref|YP_034572.1| D-alanyl-alanine synthetase A [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|196036015|ref|ZP_03103416.1| D-alanine--D-alanine ligase [Bacillus cereus W]
 gi|196046155|ref|ZP_03113382.1| D-alanine--D-alanine ligase [Bacillus cereus 03BB108]
 gi|218901438|ref|YP_002449272.1| D-alanine--D-alanine ligase [Bacillus cereus AH820]
 gi|225862287|ref|YP_002747665.1| D-alanine--D-alanine ligase [Bacillus cereus 03BB102]
 gi|228925491|ref|ZP_04088585.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228931738|ref|ZP_04094639.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228944044|ref|ZP_04106428.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|229089368|ref|ZP_04220644.1| D-alanine--D-alanine ligase [Bacillus cereus Rock3-42]
 gi|229119901|ref|ZP_04249160.1| D-alanine--D-alanine ligase [Bacillus cereus 95/8201]
 gi|229182632|ref|ZP_04309878.1| D-alanine--D-alanine ligase [Bacillus cereus BGSC 6E1]
 gi|49328304|gb|AAT58950.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|195991384|gb|EDX55351.1| D-alanine--D-alanine ligase [Bacillus cereus W]
 gi|196022900|gb|EDX61580.1| D-alanine--D-alanine ligase [Bacillus cereus 03BB108]
 gi|218539969|gb|ACK92367.1| D-alanine--D-alanine ligase [Bacillus cereus AH820]
 gi|225785880|gb|ACO26097.1| D-alanine--D-alanine ligase [Bacillus cereus 03BB102]
 gi|228600840|gb|EEK58414.1| D-alanine--D-alanine ligase [Bacillus cereus BGSC 6E1]
 gi|228663558|gb|EEL19139.1| D-alanine--D-alanine ligase [Bacillus cereus 95/8201]
 gi|228693968|gb|EEL47655.1| D-alanine--D-alanine ligase [Bacillus cereus Rock3-42]
 gi|228815715|gb|EEM61952.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228827918|gb|EEM73651.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228834236|gb|EEM79779.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 361

 Score =  127 bits (318), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 77/249 (30%), Positives = 136/249 (54%), Gaps = 14/249 (5%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-- 109
           D+ F +LHG  GEDG VQ +LEL+ IPY  +G+LASA  MDK+  K + +  G+      
Sbjct: 95  DVIFPLLHGPNGEDGTVQGLLELMNIPYVGNGVLASAAGMDKVVMKNIFAEAGLKQAKYA 154

Query: 110 SILVNRFTMDS-------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
           S + + +  D        + ++  P  +KP   GSS+GI   K  + +     ++  ++ 
Sbjct: 155 SFIRSGWEKDRETAYEKVEEVLGYPCFVKPANLGSSVGINKCKNREELENAFEEAFQFDR 214

Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVTEIA--VPKSDFYSYELKYSSLNSTHVLPAKIP 220
             ++++E+ + G E+  GV+G+     + +   VPK DFY Y+ KY   ++  ++PA++ 
Sbjct: 215 --KIIVEENIIGREVEVGVLGNDEPKCSVVGEIVPKKDFYDYKSKYIDGDTALIIPAEMT 272

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280
            +    ++R A +A Q++   G++R+DF F     +V+  E+N  PG TP S+FP +  +
Sbjct: 273 EEESNVIKRDAIVAFQSLDGAGLTRADF-FLTKDGEVYINEVNTMPGFTPFSMFPLLWQH 331

Query: 281 AGYSFRELL 289
            G  + EL+
Sbjct: 332 TGLPYPELI 340


>gi|167772359|ref|ZP_02444412.1| hypothetical protein ANACOL_03736 [Anaerotruncus colihominis DSM
           17241]
 gi|167665462|gb|EDS09592.1| hypothetical protein ANACOL_03736 [Anaerotruncus colihominis DSM
           17241]
          Length = 357

 Score =  127 bits (318), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 99/348 (28%), Positives = 160/348 (45%), Gaps = 59/348 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------------------- 38
           +AVL G ISSE EVSL S  +    +    + V  + +                      
Sbjct: 6   VAVLFGSISSEYEVSLRSAASVLRNIPRDRYDVVMLGITKDGRWFEYAGSIDDIESDRWL 65

Query: 39  ------------DRSVGLVLAHL----KP---DLAFNVLHGNFGEDGLVQAILELLEIPY 79
                       DR  G +L  L    +P   D  F VLHG   EDG +Q +LE+  + Y
Sbjct: 66  QNGPVTPAFISPDRGAGGILRLLPDGPQPVAVDAVFPVLHGEHSEDGAIQGLLEMAGLAY 125

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM----DSQHLISP----PYVIK 131
              G+LASA  MDK  +  ++ + G+ + P  ++ R  +    +++ +++     P  IK
Sbjct: 126 VGCGVLASAACMDKAVTHTILEAAGIEMTPYTVLTRGALAHFDETERMLAAKHGYPMFIK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+   K    +   L  S ++    +++ E  V G EL C V+G+   D  E
Sbjct: 186 PANTGSSVGVGKAKDAGGLCAAL--SEAFRFDRKVIAETAVVGDELECAVLGN--FDRAE 241

Query: 192 IA-----VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRS 246
            +     VP+ +FY Y  KY   ++   +PA+I  +  + +++ A  A  A+GC G+SR 
Sbjct: 242 ASCVGEIVPRHEFYDYSGKYLDDSTDLYIPARISGEASERIRQTAVRAFAAMGCTGLSRV 301

Query: 247 DFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           DF      R V   EIN  PG T +S++P++    G  + EL+  ++E
Sbjct: 302 DFFLTREGRVVLN-EINTLPGFTSISMYPKLFEAVGLPYPELISRLIE 348


>gi|52144996|ref|YP_081834.1| D-alanyl-alanine synthetase A [Bacillus cereus E33L]
 gi|51978465|gb|AAU20015.1| D-alanine--D-alanine ligase [Bacillus cereus E33L]
          Length = 361

 Score =  127 bits (318), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 77/249 (30%), Positives = 136/249 (54%), Gaps = 14/249 (5%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-- 109
           D+ F +LHG  GEDG VQ +LEL+ IPY  +G+LASA  MDK+  K + +  G+      
Sbjct: 95  DVIFPLLHGPNGEDGTVQGLLELMNIPYVGNGVLASAAGMDKVVMKNIFAEAGLKQAKYA 154

Query: 110 SILVNRFTMDS-------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
           S + + +  D        + ++  P  +KP   GSS+GI   K  + +     ++  ++ 
Sbjct: 155 SFIRSGWEKDRETAYEKVEEVLGYPCFVKPANLGSSVGINKCKNREELENAFEEAFQFDR 214

Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVTEIA--VPKSDFYSYELKYSSLNSTHVLPAKIP 220
             ++++E+ + G E+  GV+G+     + +   VPK DFY Y+ KY   ++  ++PA++ 
Sbjct: 215 --KIIVEENIIGREVEVGVLGNDEPKCSVVGEIVPKKDFYDYKSKYIDGDTALIIPAEMT 272

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280
            +    ++R A +A Q++   G++R+DF F     +V+  E+N  PG TP S+FP +  +
Sbjct: 273 EEESNVIKRDAIVAFQSLDGAGLTRADF-FLTKDGEVYINEVNTMPGFTPFSMFPLLWQH 331

Query: 281 AGYSFRELL 289
            G  + EL+
Sbjct: 332 TGLPYPELI 340


>gi|317970573|ref|ZP_07971963.1| D-alanine--D-alanine ligase [Synechococcus sp. CB0205]
          Length = 364

 Score =  127 bits (318), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 96/344 (27%), Positives = 158/344 (45%), Gaps = 54/344 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAG---------FKVSQ---------------- 35
           + ++ GG++ E  VS+ S    A+AL             F + Q                
Sbjct: 8   LGLVFGGVTGEHAVSIRSANTVAAALRSGANAQRYRLDCFYIDQWGHWWPPAVADAVLAK 67

Query: 36  -IDVDRSVGLVLAHLKP------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
               +RS  L  A L+P            +L   VLHG  GEDG +Q +  L+++P+  S
Sbjct: 68  GTPAERSE-LPAAPLRPGFQGFPEGALDVELWVPVLHGPNGEDGTIQGLFSLMQVPFVGS 126

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ---------HLISPPYVIKPL 133
           G+L SA+ MDK   K   ++ G+P  P   V+   ++ Q           +  P  IKP 
Sbjct: 127 GVLGSAVGMDKQAMKAAFAAAGLPQVPYACVDVQELEQQPEVLVQQLETQLGYPCFIKPA 186

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT--- 190
             GSS+GI        +   L  ++   H  ++++EQ +   EL C V+G   +  +   
Sbjct: 187 NLGSSVGISKASNRAELMQGLALAA--QHDPRMVVEQGIQARELECAVLGGQQMRSSVLG 244

Query: 191 EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
           EI    +D+Y Y+ KYS   S  V+PA++P  + +  + +A  A +A+G  G++R DF +
Sbjct: 245 EICF-DADWYDYDTKYSDGKSHTVIPAEVPEALSERARTMAIAACRAVGASGLARVDFFY 303

Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           +  S  ++  EIN  PG T  S++P + A  G    EL+  +V+
Sbjct: 304 EQASGALWLNEINTLPGFTSQSMYPMLWAKTGLPLEELVHELVQ 347


>gi|260904755|ref|ZP_05913077.1| D-alanine/D-alanine ligase [Brevibacterium linens BL2]
          Length = 371

 Score =  127 bits (318), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 81/256 (31%), Positives = 132/256 (51%), Gaps = 23/256 (8%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+ F +LHG +GEDG +Q + EL +  +  SG+ ASA SMDK  +K +++  G+P CP  
Sbjct: 106 DVYFPLLHGQYGEDGTLQGLFELSDTAFVGSGVFASAASMDKHYTKSLMAHAGIPTCPWE 165

Query: 112 LVNRFTM------DSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
           LV   TM      ++Q  I+    P  +KP + GSS+G+  ++  +   LD    S++ H
Sbjct: 166 LVTE-TMWEADQAEAQDRITGLGLPVFVKPARAGSSMGVSRVESAEG--LDQALRSAFEH 222

Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP-------KSDFYSYELKYSSLNSTHVL 215
             ++++E  V G E+ C V+G        ++ P       +  FY +E KY +L    + 
Sbjct: 223 DSKVIVEPQVVGREIECAVLGSVHDREVRVSFPGEIEVSGEHSFYDFEAKYLNLADAQLT 282

Query: 216 -PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD-FLFDPLSRKVFWLEINVQPGMTPVSI 273
            PA++       +Q L+    +   C G+SR D F+ D  + +V   EIN  PG TP S 
Sbjct: 283 CPARVDETTTARIQELSAQVFRLFDCTGLSRVDTFVTD--AGEVLINEINTLPGFTPTSA 340

Query: 274 FPEMAAYAGYSFRELL 289
           +P M + +G  +  L+
Sbjct: 341 YPFMWSKSGIEYPALI 356


>gi|296332824|ref|ZP_06875284.1| D-alanyl-alanine synthetase A [Bacillus subtilis subsp. spizizenii
           ATCC 6633]
 gi|305673170|ref|YP_003864842.1| D-alanyl-alanine synthetase A [Bacillus subtilis subsp. spizizenii
           str. W23]
 gi|296150104|gb|EFG90993.1| D-alanyl-alanine synthetase A [Bacillus subtilis subsp. spizizenii
           ATCC 6633]
 gi|305411414|gb|ADM36533.1| D-alanyl-alanine synthetase A [Bacillus subtilis subsp. spizizenii
           str. W23]
          Length = 361

 Score =  127 bits (318), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 79/254 (31%), Positives = 133/254 (52%), Gaps = 14/254 (5%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-- 109
           D+ F +LHG  GEDG +Q +LELL IPY  +G+LAS+  MDK+  K + +  G+      
Sbjct: 95  DVVFPLLHGPNGEDGTIQGMLELLNIPYVGNGVLASSAGMDKVVMKHLFAQAGLAQAKYA 154

Query: 110 SILVNRFTMDS-------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
           + L   +T          +  +  P  +KP   GSS+GI   +  + +        ++ +
Sbjct: 155 AFLKKDWTRSPEESCEQVEQELGYPCFVKPANLGSSVGISKCRNREELQKAF--ELAFQY 212

Query: 163 GDQLLIEQYVDGIELTCGVMG--DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
             ++++E+ ++G E+  GV+G  D    V     PK+DFY Y+ KY   ++  ++PA + 
Sbjct: 213 DRKVVVEEGINGREIEIGVLGNDDPKCSVVGEIAPKTDFYDYKAKYEDGDTDLMIPAHVT 272

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280
            + Y ++  +A  A +AI   G+ R+DF F     +V   E+N  PG TP S+FP +   
Sbjct: 273 DEEYAKISEMAIKAFKAIDGSGLVRADF-FLTADGEVLINEVNTMPGFTPFSMFPLLWKE 331

Query: 281 AGYSFRELLLWMVE 294
           AG  + +L+  +VE
Sbjct: 332 AGVEYADLIEQLVE 345


>gi|216264818|ref|ZP_03436810.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase) [Borrelia
           burgdorferi 156a]
 gi|215981291|gb|EEC22098.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase) [Borrelia
           burgdorferi 156a]
          Length = 361

 Score =  127 bits (318), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 87/344 (25%), Positives = 172/344 (50%), Gaps = 50/344 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAG-FKVSQIDVDRSVGL--------------- 44
           + ++ GG+S E E+S  S  +   AL D   + +  + +D+  G+               
Sbjct: 5   LMLIFGGVSFEHEISCKSAYSIYLALLDLNKYNIYPVYIDKCTGVWYLLDSVSDPPKPIN 64

Query: 45  --VL---------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87
             VL                +L+ ++ F V+HG  GEDG +Q +L++++IP   +GI+ S
Sbjct: 65  TDVLPIVSLLPGFGIFSNNKNLEINVVFPVVHGRTGEDGAIQGVLKVMDIPCVGAGIIGS 124

Query: 88  ALSMDKMRSKQVVSSCGVPVCPSILVNR--FTMDSQHL-------ISPPYVIKPLKGGSS 138
           A+S +K   K ++ S  +P+ P I   +  + +D + +       +  P ++KP   GSS
Sbjct: 125 AISSNKYFCKLLLKSFDIPLVPFIGFRQHDYFLDKEEIKRNVKEVLGYPVIVKPAVLGSS 184

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV---TEIAVP 195
           +GI V   +  I   + ++  ++    ++IE++++  E+ C ++G+  + +    E+ V 
Sbjct: 185 IGINVAYSENQIESFIKEALKYDL--TIVIEKFIEAREIECSIIGNEKMKIFSPGEVVVQ 242

Query: 196 KSDFYSYELKYSSLNSTHV---LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
              FY Y+ KYS +    +   +PA +  +    ++  AFLA++ +  RG++R DF  + 
Sbjct: 243 DFIFYDYDAKYSVIPGNSIIFNIPAHLETNQLLSIKEYAFLAYKNLELRGMARVDFFVEK 302

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            S  ++  EIN  PG T +S+F +M +  G  F++L+  +++ A
Sbjct: 303 KSGTIYLNEINTIPGFTDISMFAKMCSNDGLQFKDLVDNLIDYA 346


>gi|118475993|ref|YP_893144.1| D-alanyl-alanine synthetase A [Bacillus thuringiensis str. Al
           Hakam]
 gi|118415218|gb|ABK83637.1| D-alanine--D-alanine ligase [Bacillus thuringiensis str. Al Hakam]
          Length = 367

 Score =  127 bits (318), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 77/249 (30%), Positives = 136/249 (54%), Gaps = 14/249 (5%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-- 109
           D+ F +LHG  GEDG VQ +LEL+ IPY  +G+LASA  MDK+  K + +  G+      
Sbjct: 101 DVIFPLLHGPNGEDGTVQGLLELMNIPYVGNGVLASAAGMDKVVMKNIFAEAGLKQAKYA 160

Query: 110 SILVNRFTMDS-------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
           S + + +  D        + ++  P  +KP   GSS+GI   K  + +     ++  ++ 
Sbjct: 161 SFIRSGWEKDRETAYEKVEEVLGYPCFVKPANLGSSVGINKCKNREELENAFEEAFQFDR 220

Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVTEIA--VPKSDFYSYELKYSSLNSTHVLPAKIP 220
             ++++E+ + G E+  GV+G+     + +   VPK DFY Y+ KY   ++  ++PA++ 
Sbjct: 221 --KIIVEENIIGREVEVGVLGNDEPKCSVVGEIVPKKDFYDYKSKYIDGDTALIIPAEMT 278

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280
            +    ++R A +A Q++   G++R+DF F     +V+  E+N  PG TP S+FP +  +
Sbjct: 279 EEESNVIKRDAIVAFQSLDGAGLTRADF-FLTKDGEVYINEVNTMPGFTPFSMFPLLWQH 337

Query: 281 AGYSFRELL 289
            G  + EL+
Sbjct: 338 TGLPYPELI 346


>gi|315937117|gb|ADU56124.1| hypothetical protein CA915-3 [uncultured organism CA915]
          Length = 346

 Score =  126 bits (317), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 99/336 (29%), Positives = 159/336 (47%), Gaps = 47/336 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           + ++ GG+S E  +S+ S K  A AL+   ++   I + R     L              
Sbjct: 6   IGIVFGGVSEEHPISIKSAKEVAKALDTEKYEPFWIGITRDGTWKLCDGPGADWESGNCR 65

Query: 47  -AHLKPD--------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
            A L PD                    +   VLHG  GEDG +Q +LEL  IPY    I 
Sbjct: 66  PAVLSPDRGTHGLLVMDSGRYETINLDVVLPVLHGKLGEDGAMQGLLELSGIPYAGCDIQ 125

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-DSQHLISPPYVIKPLKGGSSLGIIVI 144
           +SA+ MDK  +  V+SS G+      +V    M D++ L+ P +V KP + GSS G+  +
Sbjct: 126 SSAVCMDKSLTYAVISSAGIRTPEFWVVTADEMPDAEQLVYPVFV-KPARSGSSFGVTKV 184

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFY 200
              + +   + ++  ++   ++LIE  V G E+ C ++G+     + +V  +A+    F 
Sbjct: 185 TGPEQLRSAVAEARQYDS--KVLIEAAVIGSEIGCAILGNGDDLIAGEVDRVALSHGFFR 242

Query: 201 SYEL---KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
            ++    +  S NS  ++PA IP +    VQ  A   ++A+GCRG++R D +F      V
Sbjct: 243 IHQEDSPETGSENSNFIVPADIPTEARSLVQETAKAIYRALGCRGLARVD-MFLKEDGVV 301

Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
              E+N  PG+T  S +P M A AG S  E++  MV
Sbjct: 302 VLNEVNTLPGLTSYSRYPRMMAAAGLSLTEVIDRMV 337


>gi|194363951|ref|YP_002026561.1| D-alanyl-alanine synthetase A [Stenotrophomonas maltophilia R551-3]
 gi|194346755|gb|ACF49878.1| D-alanine/D-alanine ligase [Stenotrophomonas maltophilia R551-3]
          Length = 364

 Score =  126 bits (317), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 97/348 (27%), Positives = 167/348 (47%), Gaps = 59/348 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS------------------- 41
           + ++ GG SSE EVSL S K    AL    F+   + +D+                    
Sbjct: 6   VGIIFGGKSSEHEVSLQSAKNILDALNRERFEPVLVGIDKQGQWHLSQPDTFLINADDPS 65

Query: 42  ------VGLVLA--------HLKP----------DLAFNVLHGNFGEDGLVQAILELLEI 77
                  G  LA         L+P          D+   ++HG  GEDG +Q +L +  +
Sbjct: 66  RIALHRSGTSLAVRPGAEQSQLQPSDAASALGQIDVVLPIVHGPLGEDGALQGLLRMANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF---TMDSQHLISP---PYVIK 131
           P+  S +L SA++MDK  +K+++   G+ V P + + R     +D   +I+    P  +K
Sbjct: 126 PFVGSPVLGSAVAMDKDVTKRLLRDAGLKVAPWLCIRRHQAAAVDVDAVIAQLGLPLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD----ASL 187
           P   GSS+G+  +K        L  +  ++H  ++L+E  V G E+ C V+G+    ASL
Sbjct: 186 PANQGSSVGVSKVKDAAGFAGALELALRYDH--KVLVESAVVGREIECAVLGNTLPQASL 243

Query: 188 DVTEIAVPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRS 246
              E+ V   +FY+Y+ KY + +    V+PA I  D    +Q++A  A+QA+ C G++R 
Sbjct: 244 -CGEVVV-HDEFYAYDTKYINEDGAEVVVPADIDADTQARIQQIALQAYQALECAGMARV 301

Query: 247 DFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           D +F     ++   E+N  PG T +S++P++   +G  +  L+  ++E
Sbjct: 302 D-VFLTADGEIVINEVNTLPGFTRISMYPKLWGASGVDYTTLITRLIE 348


>gi|45580843|emb|CAG15003.1| ligase [Actinoplanes teichomyceticus]
          Length = 345

 Score =  126 bits (317), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 95/324 (29%), Positives = 153/324 (47%), Gaps = 45/324 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------------------- 38
           + ++ GG+S E  VS+ S +  A +L+   ++   I +                      
Sbjct: 6   IGIIFGGVSEEHPVSIKSAQEVAKSLDAEKYEPYWIGITKDGAWRLCDGPGADWEISSAR 65

Query: 39  ------DRSV-GLVLAH------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
                 DR+V GL++        ++ D+   VLHG  GEDG +Q + EL  IPY    + 
Sbjct: 66  PAMLSPDRNVHGLLVQEDGRYREIRLDVVLPVLHGKLGEDGAMQGLFELSGIPYVGCDVQ 125

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145
           +SA+ MDK  +  VVSS G+      +V          ++ P  +KP + GSS G+  + 
Sbjct: 126 SSAVCMDKSLTYAVVSSAGIAAATFWVVTPDEAPDPAQLTYPVFVKPARSGSSFGVTKVS 185

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD----ASLDVTEIAVPKSDFYS 201
            +Q +   L  +  ++   ++LIE+ V G E+ C +MG+     + +V  +A+    F  
Sbjct: 186 TEQELKAALETAREFDS--KVLIEEAVVGSEIGCAIMGNDPDLVAGEVDRVALSHGFFRI 243

Query: 202 Y---ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
           +   E +  S NST + PA IP +    VQ  A   ++A+GCRGI+R D +F      V 
Sbjct: 244 HQESEPERGSENSTFICPADIPAEARSLVQETAKAIYRALGCRGIARVD-MFLKEDGTVV 302

Query: 259 WLEINVQPGMTPVSIFPEMAAYAG 282
             E+N  PG+T  S +P M A AG
Sbjct: 303 LNEVNTLPGLTSYSRYPRMMAAAG 326


>gi|281420976|ref|ZP_06251975.1| D-alanine--D-alanine ligase [Prevotella copri DSM 18205]
 gi|254966986|gb|ACT97527.1| putative D-alanyl-alanine synthetase A [uncultured organism]
 gi|254967007|gb|ACT97539.1| putative D-alanyl-alanine synthetase A [uncultured organism]
 gi|254967009|gb|ACT97540.1| putative D-alanyl-alanine synthetase A [uncultured organism]
 gi|254967011|gb|ACT97541.1| putative D-alanyl-alanine synthetase A [uncultured organism]
 gi|281404894|gb|EFB35574.1| D-alanine--D-alanine ligase [Prevotella copri DSM 18205]
          Length = 331

 Score =  126 bits (317), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 94/327 (28%), Positives = 160/327 (48%), Gaps = 37/327 (11%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40
           +A++ GG SSE +VSL SG+   S  +   + +  +DV                    D 
Sbjct: 8   IAIVCGGDSSEHDVSLRSGQGLYSFFDKERYNIYLVDVKGTDWHVALDNGETIEIDKNDF 67

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           S  +   H+  D A+  +HG  GE+G++Q   +L+ +PY+ SG+L  A++ DK      +
Sbjct: 68  SFVMNGKHVYFDYAYITIHGQPGENGVMQGYFDLIHLPYSTSGVLVEAMTFDKYVLNNYL 127

Query: 101 SSCGVPVCPSILVNR-FTMDSQHL---ISPPYVIKPLKGGSSLGIIVIKK-DQSIPLDLL 155
              G+ V  SIL+ R    D + +   I  P  +KP   GSS G+  +K  DQ  P   +
Sbjct: 128 RGFGINVADSILLRRGEAYDEEEIAKRIGMPCFVKPAADGSSFGVSKVKNADQLAPALRV 187

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDAS----LDVTEIAVPKSDFYSYELKYSSLNS 211
              ++   ++++IE ++DG E++ G+   A     L  TE+ V  ++F+ Y+ KY+    
Sbjct: 188 ---AFMESNEVMIEGFLDGTEISQGIYKTAEKTVVLPATEV-VTTNEFFDYDAKYNG-QV 242

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF--DPLSR-KVFWLEINVQPGM 268
             + PA++  +  +EV +     +  +   GI R D++   D   + KV  LEIN  PGM
Sbjct: 243 QEITPARLSPETAEEVAKTTSRIYDILHANGIIRIDYIISKDKDGKDKVNMLEINTTPGM 302

Query: 269 TPVSIFPEMAAYAGYSFRELLLWMVED 295
           T  S  P+    AG   +++L  +VE+
Sbjct: 303 TVTSFIPQQVRAAGLDIKDVLSEIVEN 329


>gi|32490966|ref|NP_871220.1| hypothetical protein WGLp217 [Wigglesworthia glossinidia
           endosymbiont of Glossina brevipalpis]
 gi|31340031|sp|Q8D2Y5|DDL_WIGBR RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|25166172|dbj|BAC24363.1| ddlA [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 350

 Score =  126 bits (317), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 85/253 (33%), Positives = 142/253 (56%), Gaps = 20/253 (7%)

Query: 49  LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
           LK D+ F++LHG+ GE+G  Q +   +  P+  S +L+S++ MDK  SK+++S+ G+ V 
Sbjct: 95  LKIDVIFSILHGSNGENGAFQGLFNTIYTPFVGSNVLSSSICMDKDISKRILSTFGISVV 154

Query: 109 PSILV-----NRFTMDSQHLISPPYVIKPLKGGSSLGIIV----IKKDQSIPLDLLQSSS 159
           PSI +      +      + I  P  IKP   GSS G+ V    I   +SI +  L S  
Sbjct: 155 PSITLYYENYKKKINKIINNIKFPCCIKPSNQGSSFGVNVANDFISLKESIDVAFLYS-- 212

Query: 160 WNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLP 216
                ++LIE ++ G E+  GV+G+ ++  +   EI   K  FY Y+ KY S  +  ++P
Sbjct: 213 ----KKILIEPFIQGREIEVGVLGNRNVISSVCGEIKFKKI-FYDYKEKYISKKTKIIIP 267

Query: 217 AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPE 276
           AKI  +I  +++++A LA  ++ C  ++R DF F   ++K+F  EIN  PG T  SI+P+
Sbjct: 268 AKISNEISNKIKKIAKLAFISLECSIMARVDF-FLTKNKKIFLNEINTIPGFTKNSIYPK 326

Query: 277 MAAYAGYSFRELL 289
           + + +G  F+ L+
Sbjct: 327 LWSKSGLDFKSLI 339


>gi|313885390|ref|ZP_07819140.1| D-ala D-ala ligase N-terminal domain protein [Eremococcus coleocola
           ACS-139-V-Col8]
 gi|312619120|gb|EFR30559.1| D-ala D-ala ligase N-terminal domain protein [Eremococcus coleocola
           ACS-139-V-Col8]
          Length = 361

 Score =  126 bits (317), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 88/339 (25%), Positives = 157/339 (46%), Gaps = 55/339 (16%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-----SVGLVLAHLKPD----- 52
           VL GG+S E ++S+ S     +AL +A + V    +++        LV   L  D     
Sbjct: 5   VLYGGLSPEHDISILSATNVINALLEADYSVQPYYINKEGKWLKAPLVTEKLASDTLLQL 64

Query: 53  -------------------------------LAFNVLHGNFGEDGLVQAILELLEIPYTH 81
                                          + F VLHG  GEDG +Q  LE+L +PY  
Sbjct: 65  KQAHAASWGDGKGLTSTGVWIQPGQIAEDDAVVFPVLHGPNGEDGTIQGFLEVLNLPYVG 124

Query: 82  SGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--FTMDSQHLISP-------PYVIKP 132
           +G+ ASA  MDK+ SKQ+    G+P  P +  ++  +  D    I         P+ +KP
Sbjct: 125 AGVTASATGMDKIISKQLFDQAGLPQVPYVYFDKRDWLQDQSRWIQKCEGNLLYPFFVKP 184

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192
              GSS+G+  ++  Q +   +  +  ++   ++++EQ +   E    V+G+  +  + +
Sbjct: 185 ANMGSSVGVSRVENSQELIKAVDVALEFDR--RIVVEQGISANECEVAVLGNDDIHASVV 242

Query: 193 A--VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
              V  SDFY Y+ KY +      +PA +P  +  +++  A  A++A+   G++R+DF F
Sbjct: 243 GRLVKSSDFYDYDEKYINNTVEMEIPANLPEAVSDKIKDYALKAYRAVDGTGLTRADF-F 301

Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
              +  ++  E+N  PG T  S++P +    G ++R+L+
Sbjct: 302 VTANYDIYINEVNTMPGFTQFSMYPSLWQATGLNYRDLI 340


>gi|282890537|ref|ZP_06299060.1| hypothetical protein pah_c022o126 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281499534|gb|EFB41830.1| hypothetical protein pah_c022o126 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 788

 Score =  126 bits (317), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 98/324 (30%), Positives = 154/324 (47%), Gaps = 44/324 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           + +L GG S+E EVSL+S +    +L+   ++  +  + +    VL +            
Sbjct: 455 IGILYGGKSTEHEVSLTSSQYICRSLDRDLYETHEFLITKEGKWVLKNEGDSEEFLISSQ 514

Query: 49  -----LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103
                 K DL F +LHG FGEDG +Q  LE+L  PY      +SA+ MDK  +K+++   
Sbjct: 515 VLQQLQKCDLLFPILHGTFGEDGTIQGFLEILGKPYVGCDHQSSAICMDKAIAKRLMQHA 574

Query: 104 GVPVCPSILV------NRFTMDSQHLISP----PYVIKPLKGGSSLGIIVIKKDQSIPLD 153
           G+     I        NR   D  H I      P  +KP+  GSS+G+  +  +    LD
Sbjct: 575 GIQTSSFIAFSETDWKNR-AKDLLHEIREKLIFPIFVKPVHLGSSIGVQRVTNETE--LD 631

Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYS------YELKYS 207
               +++     +L+E  + G E+   V+G+  + V    +P  + +S      Y  KYS
Sbjct: 632 AAIRNAFAFDPVILVENEIAGREIEFAVLGNDQITV----LPPGEVFSAGKIHDYRGKYS 687

Query: 208 SLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL-EINVQ 265
             N+T   P A +P    +E + +A  A+QA  C+G++R DF  D      FW  EIN  
Sbjct: 688 RDNATPSTPQADLPEKWMEEGKAIALKAYQAATCKGMARIDFFLD--QSGSFWFNEINPI 745

Query: 266 PGMTPVSIFPEMAAYAGYSFRELL 289
           PG TP S++P+M    G+S  EL+
Sbjct: 746 PGFTPFSLYPQMCEANGFSNEELI 769


>gi|190359232|sp|A3CLS3|DDL_STRSV RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
          Length = 348

 Score =  126 bits (317), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 101/340 (29%), Positives = 164/340 (48%), Gaps = 46/340 (13%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH-------------- 48
           +L GG S+EREVS+ S ++   A+    F V    + +    +                 
Sbjct: 8   LLYGGRSAEREVSVLSAESVMRAVNYDRFSVKTYFITKDGDFIQTQEFEAKPAADEKLMT 67

Query: 49  ---------LKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
                    +KP        + F VLHG  GEDG +Q  LE+L++PY    IL+S L+MD
Sbjct: 68  NATVDMSQKIKPSDIYEDGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNILSSGLAMD 127

Query: 93  KMRSKQVVSSCGVPVCPSI-LVNRFTMDS-----QHLISPPYVIKPLKGGSSLGIIVIKK 146
           K+ +K+V+ S G+   P + LV+   ++      +  ++ P   KP   GSS+GI   K 
Sbjct: 128 KITTKRVLESAGIAQVPYVALVDGEDLEQKIQEIEEKLTYPVFTKPSNMGSSVGI--SKS 185

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYE 203
           +    L      ++ +  ++L+EQ V   E+  G++G+  +  T   E+ V    FY YE
Sbjct: 186 ENQAELRASLDLAFKYDSRVLVEQGVTAREIEVGLLGNVDVKSTLPGEV-VKDVAFYDYE 244

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            KY     T  +PAKIP ++   +++ A  A +A+G  G+SR DF +     +VF  E+N
Sbjct: 245 AKYIDNKITMDIPAKIPEEVVSLMRQNAEAAFRALGGLGLSRCDFFYAE-DGQVFLNELN 303

Query: 264 VQPGMTPVSIFPEMAAYAGYSFREL---LLWMVEDASCLR 300
             PG T  S++P +    G S+ +L   L+ + E+A   R
Sbjct: 304 TMPGFTQWSMYPLLWENMGLSYPDLIEKLVGLAEEAFAKR 343


>gi|94987124|ref|YP_595057.1| D-alanine-D-alanine ligase and related ATP-grasp enzymes [Lawsonia
           intracellularis PHE/MN1-00]
 gi|166198488|sp|Q1MQJ1|DDL_LAWIP RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|94731373|emb|CAJ54736.1| D-alanine-D-alanine ligase and related ATP-grasp enzymes [Lawsonia
           intracellularis PHE/MN1-00]
          Length = 302

 Score =  126 bits (317), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 94/299 (31%), Positives = 161/299 (53%), Gaps = 12/299 (4%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQID----VDRSVGLVLAHLKPDLAFNVL 58
           +L GG SSEREVSL S +   SA+ + G  V+ +D     D+   +V    K D+AF +L
Sbjct: 5   LLAGGWSSEREVSLQSAELITSAMIEYGHTVTCLDPLYDFDK---IVEVAEKQDVAFILL 61

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN-RFT 117
           HG+ GEDG++QA+LE +  PY  +    S L++ K  +K +    G+    S+ +  +  
Sbjct: 62  HGSPGEDGILQALLERVGCPYQGASPAGSLLALHKAAAKALFRREGLLTPKSVFLPLKPE 121

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
           +  +  ++ P  +K   GGSS+ + ++   +   L +   + +N G+++L+E+ + G E+
Sbjct: 122 VTWEPGLNYPIFVKSNIGGSSVNVHLVTNYEE--LFIAMEALFNAGEEVLLEEAIIGQEV 179

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TCGV+ D +L    I   +  F+ Y  KY+   +  + PA +   + K +Q  A  AH  
Sbjct: 180 TCGVIDDQALPPILIR-SQGKFFDYYNKYAKNGAEEICPAPLEPHVLKHIQEYALRAHNT 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +  +G SR+DF+       +F LE+N  PGM+  S+ P  AA  G +F EL+  +++ A
Sbjct: 239 LNLQGCSRADFILRD-DELLFLLEVNTIPGMSATSLVPREAAAMGLTFPELVEKLIQLA 296


>gi|125717545|ref|YP_001034678.1| D-alanyl-alanine synthetase A [Streptococcus sanguinis SK36]
 gi|125497462|gb|ABN44128.1| D-ala,D-ala ligase, putative [Streptococcus sanguinis SK36]
          Length = 353

 Score =  126 bits (317), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 104/340 (30%), Positives = 166/340 (48%), Gaps = 46/340 (13%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKV----------------------------S 34
           +L GG S+EREVS+ S ++   A+    F V                            +
Sbjct: 13  LLYGGRSAEREVSVLSAESVMRAVNYDRFSVKTYFITKDGDFIQTQEFEAKPAADEKLMT 72

Query: 35  QIDVDRSVGLVLAHLKPDLA--FNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
              VD S  +  + +  D A  F VLHG  GEDG +Q  LE+L++PY    IL+S L+MD
Sbjct: 73  NATVDMSQKIKPSDIYEDGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNILSSGLAMD 132

Query: 93  KMRSKQVVSSCGVPVCPSI-LVNRFTMDS-----QHLISPPYVIKPLKGGSSLGIIVIKK 146
           K+ +K+V+ S G+   P + LV+   ++      +  ++ P   KP   GSS+GI   K 
Sbjct: 133 KITTKRVLESAGIAQVPYVALVDGEDLEQKIQEIEEKLTYPVFTKPSNMGSSVGI--SKS 190

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYE 203
           +    L      ++ +  ++L+EQ V   E+  G++G+  +  T   E+ V    FY YE
Sbjct: 191 ENQAELRASLDLAFKYDSRVLVEQGVTAREIEVGLLGNVDVKSTLPGEV-VKDVAFYDYE 249

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            KY     T  +PAKIP ++   +++ A  A +A+G  G+SR DF +     +VF  E+N
Sbjct: 250 AKYIDNKITMDIPAKIPEEVVSLMRQNAEAAFRALGGLGLSRCDFFYAE-DGQVFLNELN 308

Query: 264 VQPGMTPVSIFPEMAAYAGYSFREL---LLWMVEDASCLR 300
             PG T  S++P +    G S+ +L   L+ + E+A   R
Sbjct: 309 TMPGFTQWSMYPLLWENMGLSYPDLIEKLVGLAEEAFAKR 348


>gi|308177218|ref|YP_003916624.1| D-alanine--D-alanine ligase [Arthrobacter arilaitensis Re117]
 gi|307744681|emb|CBT75653.1| D-alanine--D-alanine ligase [Arthrobacter arilaitensis Re117]
          Length = 370

 Score =  126 bits (317), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 92/258 (35%), Positives = 131/258 (50%), Gaps = 26/258 (10%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-S 110
           D+ F +LHG FGEDG +Q +LE+  + Y  SGI ASA+ MDK   K V    G  V P  
Sbjct: 104 DVVFPLLHGPFGEDGSIQGMLEMAGVSYVGSGIAASAMGMDKHYMKVVFEGAGFNVGPYE 163

Query: 111 ILVNR-FTMDSQHLISP------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
           ++ N+ +  DS+  +        P  +KP + GSS+GI   K D    L      +    
Sbjct: 164 VITNKQWLRDSEAAMKRCDNLQYPLFVKPARAGSSVGI--TKVDDPSELRAAIEIARAED 221

Query: 164 DQLLIEQYVDGIELTCGVM-------GDASLDVTEIAVPKS--DFYSYELKYSSLNSTHV 214
            +++IEQ + G E+ CGV+         ASL   EIAV  +   FY +E KY    +  +
Sbjct: 222 PKVIIEQGIVGREIECGVLEGRGSGPSRASLP-GEIAVADNLHTFYDFEAKYVDGAAAEL 280

Query: 215 -LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL--EINVQPGMTPV 271
             PA +  +   E++ LA  A  AI   G+SR DF + P      W+  EIN  PG TP 
Sbjct: 281 SCPANLSDEATLEIRELAVKAFDAIDAEGLSRVDFFYTPEGD---WIINEINTMPGFTPS 337

Query: 272 SIFPEMAAYAGYSFRELL 289
           S++P+M A  G  +REL+
Sbjct: 338 SMYPQMWAKTGIEYRELI 355


>gi|332366050|gb|EGJ43806.1| D-alanine-D-alanine ligase [Streptococcus sanguinis SK1059]
          Length = 353

 Score =  126 bits (317), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 102/340 (30%), Positives = 166/340 (48%), Gaps = 46/340 (13%)

Query: 3   VLMGGISSEREVSLSSGKACASAL-------------EDAGFKVSQ-------------- 35
           +L GG S+EREVS+ S ++   A+             +D  F  +Q              
Sbjct: 13  LLYGGRSAEREVSVLSAESVMRAVNYDRFSVKTYFITKDGDFIQTQEFEATPAADEKLMT 72

Query: 36  ---IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
              +D+ R +     +    + F VLHG  GEDG +Q  LE+L++PY    IL+S L+MD
Sbjct: 73  NATVDMSRKIKPSDIYEDGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNILSSGLAMD 132

Query: 93  KMRSKQVVSSCGVPVCPSI-LVNRFTMDS-----QHLISPPYVIKPLKGGSSLGIIVIKK 146
           K+ +K+V+ S G+   P + LV+   ++      +  ++ P   KP   GSS+GI   K 
Sbjct: 133 KITTKRVLESAGIAQVPYVALVDGEDLEQKIQEIEEKLTYPVFTKPSNMGSSVGI--SKS 190

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYE 203
           +    L      ++ +  ++L+EQ V   E+  G++G+  +  T   E+ V    FY YE
Sbjct: 191 ENQAELRASLDLAFKYDSRVLVEQGVTAREIEVGLLGNVDVKSTLPGEV-VKDVAFYDYE 249

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            KY     T  +PAKIP  +   +++ A  A +A+G  G+SR DF +     +VF  E+N
Sbjct: 250 AKYIDNKITMDIPAKIPEKVVSLMRQNAEAAFRALGGLGLSRCDFFYAE-DGQVFLNELN 308

Query: 264 VQPGMTPVSIFPEMAAYAGYSFREL---LLWMVEDASCLR 300
             PG T  S++P +    G S+ +L   L+ + E+A   R
Sbjct: 309 TMPGFTQWSMYPLLWENMGLSYPDLIEKLVGLAEEAFAKR 348


>gi|15594545|ref|NP_212334.1| D-alanyl-alanine synthetase A [Borrelia burgdorferi B31]
 gi|3913421|sp|O51218|DDL_BORBU RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|2688093|gb|AAC66589.1| D-alanine--D-alanine ligase (ddlA) [Borrelia burgdorferi B31]
          Length = 356

 Score =  126 bits (317), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 87/342 (25%), Positives = 170/342 (49%), Gaps = 50/342 (14%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAG-FKVSQIDVDRSVGL----------------- 44
           ++ GG+S E E+S  S  +   AL D   + +  + +D+  G+                 
Sbjct: 2   LIFGGVSFEHEISCKSAYSIYLALLDLNKYNIYPVYIDKCTGVWYLLDSVSDPPKPINTD 61

Query: 45  VL---------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
           VL                +L+ D+ F V+HG  GEDG +Q +L++++IP   +GI+ SA+
Sbjct: 62  VLPIVSLLPGFGIFSNNKNLEIDVVFPVVHGRTGEDGAIQGVLKVMDIPCVGAGIIGSAI 121

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNR--FTMDSQHL-------ISPPYVIKPLKGGSSLG 140
           S +K   K ++ S  +P+ P I   +  + +D + +       +  P ++KP   GSS+G
Sbjct: 122 SSNKYFCKLLLKSFDIPLVPFIGFRQHDYFLDKEEIKRNVKEVLGYPVIVKPAVLGSSIG 181

Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV---TEIAVPKS 197
           I V   +  I   + ++  ++    ++IE++++  E+ C ++G+  + +    E+ V   
Sbjct: 182 INVAYSENQIESFIKEALKYDL--TIVIEKFIEAREIECSIIGNEKMKIFSPGEVVVQDF 239

Query: 198 DFYSYELKYSSLNSTHV---LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
            FY Y+ KYS +    +   +PA +  +    ++  AFL ++ +  RG++R DF  +  S
Sbjct: 240 IFYDYDAKYSVIPGNSIIFNIPAHLETNQLLSIKEYAFLTYKNLELRGMARVDFFVEKKS 299

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             ++  EIN  PG T +S+F +M +  G  F++L+  +++ A
Sbjct: 300 GTIYLNEINTIPGFTDISMFAKMCSNDGLQFKDLVDNLIDYA 341


>gi|228912976|ref|ZP_04076620.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228846671|gb|EEM91679.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 361

 Score =  126 bits (317), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 77/249 (30%), Positives = 136/249 (54%), Gaps = 14/249 (5%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-- 109
           D+ F +LHG  GEDG VQ +LEL+ IPY  +G+LASA  MDK+  K + +  G+      
Sbjct: 95  DVIFPLLHGPNGEDGTVQGLLELMNIPYVGNGVLASAAGMDKVVMKNIFAEAGLKQAKYA 154

Query: 110 SILVNRFTMDS-------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
           S + + +  D        + ++  P  +KP   GSS+GI   K  + +     ++  ++ 
Sbjct: 155 SFIRSGWEKDRETAYEKVEEVLGYPCFVKPANLGSSVGINKCKNREELENAFEEAFQFDR 214

Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVTEIA--VPKSDFYSYELKYSSLNSTHVLPAKIP 220
             ++++E+ + G E+  GV+G+     + +   VPK DFY Y+ KY   ++  ++PA++ 
Sbjct: 215 --KIIVEENIIGREVEVGVLGNDEPKCSVVGEIVPKKDFYDYKSKYIDGDTALIIPAEMT 272

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280
            +    ++R A +A Q++   G++R+DF F     +V+  E+N  PG TP S+FP +  +
Sbjct: 273 EEESSVIKRDAIVAFQSLDGAGLTRADF-FLTKDGEVYINEVNTMPGFTPFSMFPLLWQH 331

Query: 281 AGYSFRELL 289
            G  + EL+
Sbjct: 332 TGLPYPELI 340


>gi|331265947|ref|YP_004325577.1| D-ala,D-ala ligase [Streptococcus oralis Uo5]
 gi|326682619|emb|CBZ00236.1| D-ala,D-ala ligase [Streptococcus oralis Uo5]
          Length = 347

 Score =  126 bits (317), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 98/331 (29%), Positives = 160/331 (48%), Gaps = 43/331 (12%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKV----------------------------- 33
           +L GG S+EREVS+ S ++   A+    F V                             
Sbjct: 7   LLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDFIKTQEFSQTPGQEDRLMT 66

Query: 34  -SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
            + ID ++ +     + +  + F VLHG  GEDG VQ  LE+L++PY    IL+S+L+MD
Sbjct: 67  NATIDWNKKIAPSSIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLAMD 126

Query: 93  KMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           K+ +K+V+ S G+   P +       V     + +  ++ P   KP   GSS+GI   K 
Sbjct: 127 KITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLTYPVFTKPSNMGSSVGI--SKS 184

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYE 203
           +    L      ++ +  ++L+EQ V+  E+  G++G+  +  T   E+ V    FY Y+
Sbjct: 185 ENHEELRQALELAFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVAFYDYD 243

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            KY     T  +PAKI  D+   ++  A  A +AIG  G+SR DF +     ++F  E+N
Sbjct: 244 AKYIDNKITMDIPAKISDDVVAVMRHNAETAFRAIGGLGLSRCDFFYTD-KGEIFLNELN 302

Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             PG T  S++P +    G S+ EL+  +V+
Sbjct: 303 TMPGFTQWSMYPLLWDNMGISYPELIERLVD 333


>gi|325694085|gb|EGD36003.1| D-alanine-D-alanine ligase [Streptococcus sanguinis SK150]
          Length = 353

 Score =  126 bits (317), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 101/340 (29%), Positives = 169/340 (49%), Gaps = 46/340 (13%)

Query: 3   VLMGGISSEREVSLSSGKACASAL-------------EDAGFKVSQ-------------- 35
           +L GG S+EREVS+ S ++   A+             +D  F  +Q              
Sbjct: 13  LLYGGRSAEREVSVLSAESVMRAVNYDRFSVKTYFITKDGDFIQTQEFEANPAADEKLMT 72

Query: 36  ---IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
              +D+ R +     +    + F VLHG  GEDG +Q  LE+L++PY    IL+S+L+MD
Sbjct: 73  NATVDMSRKIKPSDIYEDGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNILSSSLAMD 132

Query: 93  KMRSKQVVSSCGVPVCPSI-LVNRFTMDS-----QHLISPPYVIKPLKGGSSLGIIVIKK 146
           K+ +K+V+ S G+   P + LV+   ++      +  ++ P   KP   GSS+GI   K 
Sbjct: 133 KITTKRVLESAGIAQVPYVALVDGEDLEQKIQEIEEKLTYPVFTKPSNMGSSVGI--SKS 190

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYE 203
           +    L      ++ +  ++L+EQ V   E+  G++G+  +  T   E+ V    FY YE
Sbjct: 191 ENQAELRASLDLAFKYDSRVLVEQGVTAREIEVGLLGNVDVKSTLPGEV-VKDVAFYDYE 249

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            KY     T  +PAKIP ++   +++ A +A +A+G  G+SR DF +     +VF  E+N
Sbjct: 250 AKYIDNKITMDIPAKIPDEVVSLMRQNAEVAFRALGGLGLSRCDFFYVE-DGQVFLNELN 308

Query: 264 VQPGMTPVSIFPEMAAYAGYSFREL---LLWMVEDASCLR 300
             PG T  S++P +    G ++ +L   L+ + E+A   R
Sbjct: 309 TMPGFTQWSMYPLLWENMGLAYPDLIEKLVGLAEEAFAKR 348


>gi|332362739|gb|EGJ40535.1| D-alanine-D-alanine ligase [Streptococcus sanguinis SK49]
          Length = 353

 Score =  126 bits (317), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 99/330 (30%), Positives = 163/330 (49%), Gaps = 43/330 (13%)

Query: 3   VLMGGISSEREVSLSSGKACASAL-------------EDAGFKVSQ-------------- 35
           +L GG S+EREVS+ S ++   A+             +D  F  +Q              
Sbjct: 13  LLYGGRSAEREVSVLSAESVMRAVNYDRFSVKTYFITKDGDFIQTQEFEANPAADDKLMT 72

Query: 36  ---IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
              +D+ R +     +    + F VLHG  GEDG +Q  LE+L++PY    IL+S+L+MD
Sbjct: 73  NATVDMSRKIKPSDIYEDGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNILSSSLAMD 132

Query: 93  KMRSKQVVSSCGVPVCPSI-LVNRFTMDS-----QHLISPPYVIKPLKGGSSLGIIVIKK 146
           K+ +K+V+ S G+   P + LV+   ++      +  ++ P   KP   GSS+GI   K 
Sbjct: 133 KITTKRVLESAGIAQVPYVALVDGEDLEQKIQEIEEQLTYPVFTKPSNMGSSVGI--SKS 190

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYE 203
           +    L      ++ +  ++L+EQ V   E+  G++G+  +  T   E+ V    FY YE
Sbjct: 191 ENQAELRASLDLAFKYDSRVLVEQGVTAREIEVGLLGNVDVKSTLPGEV-VKDVAFYDYE 249

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            KY     T  +PAKIP  +   +++ A  A +A+G  G+SR DF +     +VF  E+N
Sbjct: 250 AKYIDNKITMDIPAKIPEKVVSLMRQNAEAAFRALGGLGLSRCDFFYAE-DGQVFLNELN 308

Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
             PG T  S++P +    G S+ +L+  +V
Sbjct: 309 TMPGFTQWSMYPLLWENMGLSYPDLIEKLV 338


>gi|229148633|ref|ZP_04276887.1| D-alanine--D-alanine ligase [Bacillus cereus m1550]
 gi|228634891|gb|EEK91466.1| D-alanine--D-alanine ligase [Bacillus cereus m1550]
          Length = 364

 Score =  126 bits (316), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 76/249 (30%), Positives = 136/249 (54%), Gaps = 14/249 (5%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-- 109
           D+ F +LHG  GEDG VQ +LEL+ IPY  +G+LAS+  MDK+  K + +  G+      
Sbjct: 98  DVIFPLLHGPNGEDGTVQGLLELMNIPYVGNGVLASSAGMDKVVMKNIFAEAGLKQAKYA 157

Query: 110 SILVNRFTMDSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
           S + + +  + +   S        P  +KP   GSS+GI   K  + +    +++  ++ 
Sbjct: 158 SFIRSAWEKNREEAYSKVEDKLGYPCFVKPANLGSSVGINKCKNREELEDAFVEAFQFDR 217

Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVTEIA--VPKSDFYSYELKYSSLNSTHVLPAKIP 220
             ++++E+ + G E+  GV+G+     + +   VPK DFY Y+ KY   ++  ++PA++ 
Sbjct: 218 --KIIVEENIVGREVEVGVLGNDEPKCSVVGEIVPKKDFYDYKSKYIDGDTALIIPAEMT 275

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280
            +    ++R A +A Q++   G++R+DF F     +V+  E+N  PG TP S+FP +  +
Sbjct: 276 EEESNVIKRDAIIAFQSLDGAGLTRADF-FLTKDGEVYINEVNTMPGFTPFSMFPLLWQH 334

Query: 281 AGYSFRELL 289
            G  + EL+
Sbjct: 335 TGLPYPELI 343


>gi|222099401|ref|YP_002533969.1| D-alanine--D-alanine ligase [Thermotoga neapolitana DSM 4359]
 gi|221571791|gb|ACM22603.1| D-alanine--D-alanine ligase [Thermotoga neapolitana DSM 4359]
          Length = 251

 Score =  126 bits (316), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 80/253 (31%), Positives = 131/253 (51%), Gaps = 19/253 (7%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           DL FNVLHG FGEDG +Q+IL+ L + YT S   +S L  DK+ + + +          +
Sbjct: 5   DLVFNVLHGTFGEDGSLQSILDFLGVRYTGSDAFSSMLCFDKLLAYRFLKDF-------V 57

Query: 112 LVNRFTMDSQHLISPPY----VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL 167
            +  F    +H+ S P     V+KP + GSS+G+ + + D+     L +     +G  ++
Sbjct: 58  KIPNFVEVKEHIDSSPVGYPCVVKPRREGSSIGVFICESDEEFQRALKEDLPL-YG-SVI 115

Query: 168 IEQYVDGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           +++Y+ G E+T  ++    G   L + E+   +  FY Y  KY+   +  +LPA +  + 
Sbjct: 116 VQEYIPGREMTVSIIETEEGFKVLPILELRPKRRKFYDYIAKYTEGETEFLLPAPLKPEE 175

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283
            + V+  A  A    GCRG  R D +F   + + F+LEIN  PG+T +S  P  A  AG 
Sbjct: 176 EQRVKETALRAFTEAGCRGFGRVDGIF--FNGEFFFLEINTVPGLTELSDLPASAKAAGI 233

Query: 284 SFRELLLWMVEDA 296
            F EL+  +++ A
Sbjct: 234 EFEELIDIIIKSA 246


>gi|259503673|ref|ZP_05746575.1| D-alanine-D-alanine ligase A [Lactobacillus antri DSM 16041]
 gi|259168392|gb|EEW52887.1| D-alanine-D-alanine ligase A [Lactobacillus antri DSM 16041]
          Length = 377

 Score =  126 bits (316), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 102/348 (29%), Positives = 170/348 (48%), Gaps = 62/348 (17%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVS-------------------------- 34
           +A+L GG SSE +VS  S      A++   + VS                          
Sbjct: 7   VALLFGGNSSEHDVSKRSAHNIYDAMDKDKYDVSLFMFTKDGILLDNAYSQRIFDGEPED 66

Query: 35  --------QIDVDRSVGLVLA--HLKP-DLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                    +D+DR +  ++A   L+  D  + V+HGN GEDG VQ + +LL+ PY  SG
Sbjct: 67  QVVADAYQHMDLDRPLAPIMALNELEAIDFFYPVIHGNLGEDGTVQGLFKLLKKPYVGSG 126

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVN----------RFTMDSQHLISPPYVIKPL 133
           I ASALS DK  +K++++  G+   P +L+           R   +  +LI     IKP 
Sbjct: 127 ISASALSFDKDLTKKMLNEAGIRNTPYVLLTPENQAEYSWGRLEEELGNLI----FIKPA 182

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGD---ASLDV 189
           + GSS+GI  +   +     L  +  ++   ++L E+ +D   E+   ++G+    +  +
Sbjct: 183 RQGSSVGIHRVTNAEEYAAALKDAFKYDF--KVLAEKGLDRPQEIEISILGNEHPVASKL 240

Query: 190 TEIAVPKSD-FYSYELKYSSLNS-THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
             + VPK D FY YE K+   +     LP K+P  +  E+  +A  A++ +G +G+SR D
Sbjct: 241 GAVRVPKDDPFYDYENKFVDASGVVFELPVKLPQYLTDEITEMALKAYRVLGMKGLSRID 300

Query: 248 FLFDPLSRKVFWL-EINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           FL D  S  + +L E N  PG T +S++P+M   +G S+ +L+  ++E
Sbjct: 301 FLVD--SNNIPYLSEPNTLPGFTNISLYPQMWEVSGISYSDLIDRLIE 346


>gi|254967023|gb|ACT97547.1| putative D-alanine-D-alanine ligase [uncultured organism]
          Length = 354

 Score =  126 bits (316), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 88/261 (33%), Positives = 132/261 (50%), Gaps = 15/261 (5%)

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           S G     ++ D+ F VLHG  GEDG VQ +LEL  IPY   G+LASA+SMDK+ +K +V
Sbjct: 84  SEGDATKEVRVDVVFPVLHGLRGEDGTVQGLLELARIPYVGCGVLASAVSMDKLYTKLIV 143

Query: 101 SSCG------VPVCPSIL--VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152
            S G      VPV  S L  +N      ++ +S P  +KP   GSS G  V K D    L
Sbjct: 144 DSLGIRQADYVPVRRSQLQDMNSVIASVENKLSYPVFVKPSNAGSSRG--VNKADNREEL 201

Query: 153 DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK----SDFYSYELKYSS 208
               + +  H  ++L+E+ + G E+ C V G    +V    V +    ++FY ++ KY +
Sbjct: 202 VFALNEAAKHDRKILVEETIIGHEVECAVFGGGLQEVKASGVGEIMAAAEFYDFDAKYYN 261

Query: 209 LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268
             S  V+  ++P    ++ ++ A    +A+   G+SR DF        VF  EIN  PG 
Sbjct: 262 AESKTVVDPELPGHAAEDEKKAAVEIFKAVDGYGLSRVDFFVTDAGEVVF-NEINTLPGF 320

Query: 269 TPVSIFPEMAAYAGYSFRELL 289
           T +S++P +    G S   L+
Sbjct: 321 TAISMYPMLWEARGISKSRLV 341


>gi|307564472|ref|ZP_07627013.1| D-ala D-ala ligase N-terminal domain protein [Prevotella amnii CRIS
           21A-A]
 gi|307346832|gb|EFN92128.1| D-ala D-ala ligase N-terminal domain protein [Prevotella amnii CRIS
           21A-A]
          Length = 332

 Score =  126 bits (316), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 95/328 (28%), Positives = 156/328 (47%), Gaps = 38/328 (11%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-------DRSVGLVLAHLKPDL 53
           +A++ GG SSE +VS+ S +   S  +   + +  +DV       D   G + A  K D 
Sbjct: 8   IAIVCGGDSSEHDVSMRSAQGIYSFFDKDRYNIYIVDVKGTDWHVDLPNGDIAAIDKNDF 67

Query: 54  AFNV-------------LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           +F V             +HG  GE+G++Q   EL+ +PY+ SG+L  AL+ DK      +
Sbjct: 68  SFVVDGKAVFFDYAYITIHGQPGENGMMQGYFELIHLPYSTSGVLVEALTFDKYVLNNYL 127

Query: 101 SSCGVPVCPSILVNRFTMDSQHLISP----PYVIKPLKGGSSLGIIVIKK-DQSIPLDLL 155
              G+ V  SILV R     +  +      P  +KP   GSS G+  +K  DQ  P   +
Sbjct: 128 RGFGINVADSILVRRGESIDEKFVEARLGMPCFVKPAADGSSFGVSKVKNADQLAPALRV 187

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVM-----GDASLDVTEIAVPKSDFYSYELKYSSLN 210
              ++   ++++IE+Y+ G+E++ G       G      TE+ V K++F+ Y  KY+   
Sbjct: 188 ---AFMESNEVMIERYLQGMEISQGAYKTKASGTVVFPATEV-VTKNEFFDYNAKYNG-E 242

Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF--DPLSRKVF-WLEINVQPG 267
              + PA++  +  ++V  L    +  +   GI R D++   D     V   LEIN  PG
Sbjct: 243 VQEITPARMSPETAQKVSALTDKVYNILHANGIIRIDYIISKDEQGNDVINLLEINTTPG 302

Query: 268 MTPVSIFPEMAAYAGYSFRELLLWMVED 295
           MTP S  P+    AG   +++L  +VE+
Sbjct: 303 MTPTSFIPQQVRAAGLEMKDVLTDIVEN 330


>gi|228919170|ref|ZP_04082544.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228950766|ref|ZP_04112895.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228956668|ref|ZP_04118459.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|229041130|ref|ZP_04189890.1| D-alanine--D-alanine ligase [Bacillus cereus AH676]
 gi|229067989|ref|ZP_04201302.1| D-alanine--D-alanine ligase [Bacillus cereus F65185]
 gi|229077586|ref|ZP_04210228.1| D-alanine--D-alanine ligase [Bacillus cereus Rock4-2]
 gi|229107906|ref|ZP_04237538.1| D-alanine--D-alanine ligase [Bacillus cereus Rock1-15]
 gi|229125740|ref|ZP_04254769.1| D-alanine--D-alanine ligase [Bacillus cereus BDRD-Cer4]
 gi|229143030|ref|ZP_04271468.1| D-alanine--D-alanine ligase [Bacillus cereus BDRD-ST24]
 gi|229176825|ref|ZP_04304227.1| D-alanine--D-alanine ligase [Bacillus cereus 172560W]
 gi|229188504|ref|ZP_04315548.1| D-alanine--D-alanine ligase [Bacillus cereus ATCC 10876]
 gi|228594967|gb|EEK52742.1| D-alanine--D-alanine ligase [Bacillus cereus ATCC 10876]
 gi|228606717|gb|EEK64136.1| D-alanine--D-alanine ligase [Bacillus cereus 172560W]
 gi|228640438|gb|EEK96830.1| D-alanine--D-alanine ligase [Bacillus cereus BDRD-ST24]
 gi|228657713|gb|EEL13522.1| D-alanine--D-alanine ligase [Bacillus cereus BDRD-Cer4]
 gi|228675549|gb|EEL30761.1| D-alanine--D-alanine ligase [Bacillus cereus Rock1-15]
 gi|228705725|gb|EEL58069.1| D-alanine--D-alanine ligase [Bacillus cereus Rock4-2]
 gi|228715127|gb|EEL66990.1| D-alanine--D-alanine ligase [Bacillus cereus F65185]
 gi|228727212|gb|EEL78409.1| D-alanine--D-alanine ligase [Bacillus cereus AH676]
 gi|228803006|gb|EEM49833.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228808906|gb|EEM55396.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228840481|gb|EEM85748.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 364

 Score =  126 bits (316), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 76/249 (30%), Positives = 136/249 (54%), Gaps = 14/249 (5%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-- 109
           D+ F +LHG  GEDG VQ +LEL+ IPY  +G+LAS+  MDK+  K + +  G+      
Sbjct: 98  DVIFPLLHGPNGEDGTVQGLLELMNIPYVGNGVLASSAGMDKVVMKNIFAEAGLKQAKYA 157

Query: 110 SILVNRFTMDSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
           S + + +  + +   S        P  +KP   GSS+GI   K  + +    +++  ++ 
Sbjct: 158 SFIRSAWEKNREEAYSKVEDKLGYPCFVKPANLGSSVGINKCKNREELEDAFVEAFQFDR 217

Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVTEIA--VPKSDFYSYELKYSSLNSTHVLPAKIP 220
             ++++E+ + G E+  GV+G+     + +   VPK DFY Y+ KY   ++  ++PA++ 
Sbjct: 218 --KIIVEENIVGREVEVGVLGNDEPKCSVVGEIVPKKDFYDYKSKYIDGDTALIIPAEMT 275

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280
            +    ++R A +A Q++   G++R+DF F     +V+  E+N  PG TP S+FP +  +
Sbjct: 276 EEESNVIKRDAIIAFQSLDGAGLTRADF-FLTKDGEVYINEVNTMPGFTPFSMFPLLWQH 334

Query: 281 AGYSFRELL 289
            G  + EL+
Sbjct: 335 TGLPYPELI 343


>gi|116252548|ref|YP_768386.1| D-alanyl-alanine synthetase A [Rhizobium leguminosarum bv. viciae
           3841]
 gi|115257196|emb|CAK08291.1| putative D-alanine--D-alanine ligase A [Rhizobium leguminosarum bv.
           viciae 3841]
          Length = 358

 Score =  126 bits (316), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 81/258 (31%), Positives = 144/258 (55%), Gaps = 18/258 (6%)

Query: 50  KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109
           K D+ F VLHG +GEDG VQ   E+  +P    GIL SA ++DK  +K+++ + G+PV  
Sbjct: 96  KVDILFPVLHGQYGEDGSVQGAAEVARVPLAGCGILGSAAALDKDIAKRLLRAAGLPVAR 155

Query: 110 SILVNRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
           ++ ++   + S    +  +  P  IKP + GSS+G+  +   Q +   L +  ++ H   
Sbjct: 156 AVTIHEGAVPSLAALEGELGLPLFIKPARQGSSVGVAKVHASQEVAPALAE--AFRHDRT 213

Query: 166 LLIEQYVDGIELTCGVMGDASLDV-----TEIAVPKS-DFYSYELKY-SSLNSTHVLPAK 218
           LL E++V G E+   V+ DA+ ++      EI   +S  FYSY+ KY     +   +PA+
Sbjct: 214 LLAEEFVRGREIEFSVLEDAAGELFVSRPGEIVPAESHGFYSYDAKYIDEKGAALKVPAE 273

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL--EINVQPGMTPVSIFPE 276
           +P ++   ++ +A  A +A+GC G++R DF    L+  + +L  EIN  PG T +S++ +
Sbjct: 274 LPQEVETAMRDVAAKAFRAVGCDGMARIDFF---LTDDMQFLVNEINTIPGFTDISMYSK 330

Query: 277 MAAYAGYSFRELLLWMVE 294
             A +G ++ E++  +V+
Sbjct: 331 AMAASGVTYAEIIDRLVD 348


>gi|239628538|ref|ZP_04671569.1| D-alanine-D-alanine ligase [Clostridiales bacterium 1_7_47_FAA]
 gi|239518684|gb|EEQ58550.1| D-alanine-D-alanine ligase [Clostridiales bacterium 1_7_47FAA]
          Length = 353

 Score =  126 bits (316), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 79/242 (32%), Positives = 123/242 (50%), Gaps = 15/242 (6%)

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV 105
           +  +K D+ F +LHG +GEDG +Q +LEL  IPY   G+LASA+SMDK+ +K +VS  G+
Sbjct: 89  VEEVKVDIVFPILHGLYGEDGTIQGLLELARIPYVGCGVLASAVSMDKLYTKIIVSDLGI 148

Query: 106 PVCPSILVNRFTMDSQHLISP--------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
                  V R  +     ++         P  IKP   GSS GI      Q +   LL++
Sbjct: 149 RQAEYESVYREELGDMEQVASRIEKHFPYPVFIKPSNAGSSRGISKAGNRQELEAGLLEA 208

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK----SDFYSYELKYSSLNSTH 213
           +   H  ++L+E+ + G E+ C V G  S  +    V +    ++FY ++ KY +  S  
Sbjct: 209 A--RHDRKILVEETIVGREVECAVFGGGSHGIEASGVGEILAAAEFYDFDAKYFNEESRT 266

Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273
           V    +P    ++V+R A    +A+   G++R DF        VF  EIN  PG T +S+
Sbjct: 267 VTDPVLPDGATQKVRRAAMDIFRAVDGYGLARVDFFVKDNGEVVF-NEINTMPGFTAISM 325

Query: 274 FP 275
           +P
Sbjct: 326 YP 327


>gi|311113810|ref|YP_003985032.1| D-alanine-D-alanine ligase [Rothia dentocariosa ATCC 17931]
 gi|310945304|gb|ADP41598.1| D-alanine-D-alanine ligase [Rothia dentocariosa ATCC 17931]
          Length = 374

 Score =  126 bits (316), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 83/255 (32%), Positives = 133/255 (52%), Gaps = 20/255 (7%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+ F ++HG FGEDG +Q +LEL E+PY   G+ ASA+ MDK   K    S G+ V    
Sbjct: 108 DVVFPLIHGPFGEDGTIQGLLELAELPYVGCGVTASAVGMDKHFMKVAFESAGLEVGSYE 167

Query: 112 LVN--RFTMDSQH------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
           +V   ++T + +        +  P  +KP + GSS GI  + K + +   + ++    H 
Sbjct: 168 VVTDRQWTHEREESLKRITALGYPMFVKPTRAGSSFGITKVDKFEELVPAIEEAR--RHD 225

Query: 164 DQLLIEQYVDGIELTCGVMGDASLDV------TEIAVPKSD--FYSYELKYSSLNSTHV- 214
            ++++E  + G E+ CGV+     ++       EI V   D  FY ++ KY S +S    
Sbjct: 226 AKIIVEAGIVGREIECGVLDGHHGNMPRASYPGEIEVVDEDHGFYDFDAKYISKSSAVTR 285

Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274
            PA +P D+ + ++ LA  A  A+   G+SR+DF + P  R V   E+N  PG TP+S++
Sbjct: 286 CPADLPKDMQERLRALAVKAFLALDGEGLSRADFFYTPDGRLVIN-EVNTMPGFTPISMY 344

Query: 275 PEMAAYAGYSFRELL 289
             M    G S+ EL+
Sbjct: 345 KTMWENTGISYTELI 359


>gi|317497210|ref|ZP_07955534.1| D-alanine-D-alanine ligase [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316895455|gb|EFV17613.1| D-alanine-D-alanine ligase [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 361

 Score =  126 bits (316), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 89/262 (33%), Positives = 134/262 (51%), Gaps = 20/262 (7%)

Query: 50  KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109
           K D+ F VLHG  GEDG VQ + EL +IPY   G+LASA+SMDK+ +K +V   G+    
Sbjct: 100 KVDVIFPVLHGMNGEDGTVQGLFELSKIPYVGCGVLASAVSMDKVYTKIIVDHIGIDQAK 159

Query: 110 SILVNRFTMDSQHL----------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
            + V     D +HL          I  P  +KP   GSS G  V K +    L+     +
Sbjct: 160 FVHVRE--SDFEHLEEAMDRVEKEIPYPIFVKPSCAGSSKG--VSKAENRKELEAALYEA 215

Query: 160 WNHGDQLLIEQYVDGIELTCGVMGD----ASLDVTEI-AVPKSDFYSYELKYSSLNSTHV 214
             H   +L E+ + G E+ C V+GD     S  V EI A  ++ FY ++ KY++  S  V
Sbjct: 216 VKHDRNILCEETIVGREVECAVLGDRTQVKSTCVGEILAAEEAAFYDFDAKYNNAESKTV 275

Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274
           +  ++P +  ++++  A    +A+   G+SR DF  +   R VF  EIN  PG T +S++
Sbjct: 276 VDPEMPEESKRKIKEDAEAIFRAVDGFGLSRVDFFLEESGRVVF-NEINTLPGFTSISMY 334

Query: 275 PEMAAYAGYSFRELLLWMVEDA 296
           P +    G    ELL  +++ A
Sbjct: 335 PMLWKACGLDIPELLDTLIDQA 356


>gi|291558773|emb|CBL37573.1| D-alanine--D-alanine ligase [butyrate-producing bacterium SSC/2]
          Length = 353

 Score =  126 bits (316), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 89/262 (33%), Positives = 134/262 (51%), Gaps = 20/262 (7%)

Query: 50  KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109
           K D+ F VLHG  GEDG VQ + EL +IPY   G+LASA+SMDK+ +K +V   G+    
Sbjct: 92  KVDVIFPVLHGMNGEDGTVQGLFELSKIPYVGCGVLASAVSMDKVYTKIIVDHIGIDQAK 151

Query: 110 SILVNRFTMDSQHL----------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
            + V     D +HL          I  P  +KP   GSS G  V K +    L+     +
Sbjct: 152 FVHVRE--SDFEHLEEAMDRVEKEIPYPIFVKPSCAGSSKG--VSKAENRKELEAALYEA 207

Query: 160 WNHGDQLLIEQYVDGIELTCGVMGD----ASLDVTEI-AVPKSDFYSYELKYSSLNSTHV 214
             H   +L E+ + G E+ C V+GD     S  V EI A  ++ FY ++ KY++  S  V
Sbjct: 208 VKHDRNILCEETIVGREVECAVLGDRTQVKSTCVGEILAAEEAAFYDFDAKYNNAESKTV 267

Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274
           +  ++P +  ++++  A    +A+   G+SR DF  +   R VF  EIN  PG T +S++
Sbjct: 268 VDPEMPEESKRKIKEDAEAIFRAVDGFGLSRVDFFLEESGRVVF-NEINTLPGFTSISMY 326

Query: 275 PEMAAYAGYSFRELLLWMVEDA 296
           P +    G    ELL  +++ A
Sbjct: 327 PMLWKACGLDIPELLDTLIDQA 348


>gi|324995315|gb|EGC27227.1| D-alanine-D-alanine ligase [Streptococcus sanguinis SK678]
          Length = 353

 Score =  126 bits (316), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 101/342 (29%), Positives = 165/342 (48%), Gaps = 46/342 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           + +L GG S+EREVS+ S ++   A+    F V    + +    +               
Sbjct: 11  LILLYGGRSAEREVSVLSAESVMRAVNYDRFSVKTYFITKDGDFIQTQEFEAKPAADEKL 70

Query: 49  -----------LKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
                      +KP        + F VLHG  GEDG +Q  LE+L++PY    IL+S L+
Sbjct: 71  MTNATVDISQKIKPSDIYEDGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNILSSGLA 130

Query: 91  MDKMRSKQVVSSCGVPVCPSI-LVNRFTMDS-----QHLISPPYVIKPLKGGSSLGIIVI 144
           MDK+ +K+V+ S G+   P + LV+   ++      +  ++ P   KP   GSS+GI   
Sbjct: 131 MDKITTKRVLESAGIAQVPYVALVDGENLEQKIQEIEEKLTYPVFTKPSNMGSSVGI--S 188

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYS 201
           K +    L      ++ +  ++L+EQ V   E+  G++G+  +  T   E+ V    FY 
Sbjct: 189 KSENQAELRASLDLAFKYDSRVLVEQGVTAREIEVGLLGNVDVKSTLPGEV-VKDVAFYD 247

Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
           YE KY     T  +PAKIP ++   +++ A  A +A+G  G+SR DF +     +VF  E
Sbjct: 248 YEAKYIDNKITMDIPAKIPDEVVSLMRQNAEAAFRALGGLGLSRCDFFYVE-DGQVFLNE 306

Query: 262 INVQPGMTPVSIFPEMAAYAGYSFREL---LLWMVEDASCLR 300
           +N  PG T  S++P +    G S+ +L   L+ + E+A   R
Sbjct: 307 LNTMPGFTQWSMYPLLWENMGLSYPDLIEKLVGLAEEAFAKR 348


>gi|167765979|ref|ZP_02438032.1| hypothetical protein CLOSS21_00470 [Clostridium sp. SS2/1]
 gi|167712336|gb|EDS22915.1| hypothetical protein CLOSS21_00470 [Clostridium sp. SS2/1]
          Length = 361

 Score =  126 bits (316), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 89/262 (33%), Positives = 134/262 (51%), Gaps = 20/262 (7%)

Query: 50  KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109
           K D+ F VLHG  GEDG VQ + EL +IPY   G+LASA+SMDK+ +K +V   G+    
Sbjct: 100 KVDVIFPVLHGMNGEDGTVQGLFELSKIPYVGCGVLASAVSMDKVYTKIIVDHIGIDQAK 159

Query: 110 SILVNRFTMDSQHL----------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
            + V     D +HL          I  P  +KP   GSS G  V K +    L+     +
Sbjct: 160 FVHVRE--SDFEHLEEAMDRVEKEIPYPIFVKPSCAGSSKG--VSKAENRKELEAALYEA 215

Query: 160 WNHGDQLLIEQYVDGIELTCGVMGD----ASLDVTEI-AVPKSDFYSYELKYSSLNSTHV 214
             H   +L E+ + G E+ C V+GD     S  V EI A  ++ FY ++ KY++  S  V
Sbjct: 216 VKHDRNILCEETIVGREVECAVLGDRTQVKSTCVGEILAAEEAAFYDFDAKYNNAESKTV 275

Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274
           +  ++P +  ++++  A    +A+   G+SR DF  +   R VF  EIN  PG T +S++
Sbjct: 276 VDPEMPEESKRKIKEDAEAIFRAVDGFGLSRVDFFLEESGRVVF-NEINTLPGFTSISMY 334

Query: 275 PEMAAYAGYSFRELLLWMVEDA 296
           P +    G    ELL  +++ A
Sbjct: 335 PMLWKACGLDIPELLDTLIDQA 356


>gi|168493572|ref|ZP_02717715.1| D-alanine--D-alanine ligase (D-alanylalanine
           synthetase)(D-Ala-D-Ala ligase) [Streptococcus
           pneumoniae CDC3059-06]
 gi|183576308|gb|EDT96836.1| D-alanine--D-alanine ligase (D-alanylalanine
           synthetase)(D-Ala-D-Ala ligase) [Streptococcus
           pneumoniae CDC3059-06]
          Length = 347

 Score =  126 bits (316), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 99/331 (29%), Positives = 159/331 (48%), Gaps = 43/331 (12%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQ--------------------------- 35
           +L GG S+EREVS+ S ++   A+    F V                             
Sbjct: 7   LLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDFIKTQEFSQTPGQEDRLMT 66

Query: 36  ---IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
              ID D+ V     + +  + F VLHG  GEDG VQ  LE+L++PY    IL+S+L+MD
Sbjct: 67  NETIDWDKQVAPSAIYEEGVVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLAMD 126

Query: 93  KMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           K+ +K+V+ S G+   P +       V     + +  ++ P   KP   GSS+GI   K 
Sbjct: 127 KITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLAYPVFTKPSNMGSSVGI--SKS 184

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYE 203
           +    L      ++ +  ++L+EQ V+  E+  G++G+  +  T   E+ V    FY Y+
Sbjct: 185 ENQEELRQALKLAFRYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVAFYDYD 243

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            KY     T  +PAKI  D+   +++ A  A +AIG  G+SR DF +     ++F  E+N
Sbjct: 244 AKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDFFYTDKG-EIFLNELN 302

Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             PG T  S++P +    G S+  L+  +V+
Sbjct: 303 TMPGFTQWSMYPLLWDNMGISYPGLIERLVD 333


>gi|229159399|ref|ZP_04287419.1| D-alanine--D-alanine ligase [Bacillus cereus R309803]
 gi|228624066|gb|EEK80872.1| D-alanine--D-alanine ligase [Bacillus cereus R309803]
          Length = 361

 Score =  126 bits (316), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 93/338 (27%), Positives = 160/338 (47%), Gaps = 52/338 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------DRSVGLVL----- 46
           + +L GG S+E +VSL +  A   AL    F++  I +         +R  G V      
Sbjct: 6   LGLLYGGKSAEHQVSLQTALAAIKALNQDKFEIHPIYITEQGQWVRGERIEGEVTEVEAL 65

Query: 47  ---------------AHLKP---------DLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
                            + P         D+ F +LHG  GEDG VQ +LEL+ IPY  +
Sbjct: 66  KMSGAEHAISPLSLSTEIIPSATSEENAIDVIFPLLHGPNGEDGTVQGLLELMNIPYVGN 125

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPL 133
           G+LASA  MDK+  K + +  G+         R   +          + ++  P  +KP 
Sbjct: 126 GVLASAAGMDKVVMKNIFAEAGLKQAKYASFIRSAWEKERETAYEKVEEVLGYPCFVKPA 185

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
             GSS+GI   K  + +     ++  ++   ++++E+ + G E+  GV+G+     + + 
Sbjct: 186 NLGSSVGINKCKDREELENAFEEAFQFDR--KIIVEENIVGREVEVGVLGNDEPKCSVVG 243

Query: 194 --VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
             VPK DFY Y+ KY   ++  ++PA++  +    ++R A +A Q++   G++R+DF F 
Sbjct: 244 EIVPKKDFYDYKSKYIDGDTALIIPAEMTEEESNVIKRDAIIAFQSLDGAGLTRADF-FL 302

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
               +V+  E+N  PG TP S+FP +  + G  + EL+
Sbjct: 303 TQDGEVYINEVNTMPGFTPFSMFPLLWQHTGLPYPELI 340


>gi|190892155|ref|YP_001978697.1| D-alanine-D-alanine ligase [Rhizobium etli CIAT 652]
 gi|190697434|gb|ACE91519.1| D-alanine-D-alanine ligase protein [Rhizobium etli CIAT 652]
          Length = 358

 Score =  126 bits (316), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 82/258 (31%), Positives = 145/258 (56%), Gaps = 22/258 (8%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+ F VLHG +GEDG VQ + E+  +P    GIL SA ++DK  +K+++ + G+PV  ++
Sbjct: 98  DILFPVLHGPYGEDGSVQGLAEVARVPLAGCGILGSAAALDKDIAKRLLRAAGLPVARAV 157

Query: 112 LVNR------FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
            +         T++S+  +  P  IKP + GSS+G+  +   Q     L +  ++ H   
Sbjct: 158 TIRADAAPSLATLESE--LGLPLFIKPARQGSSVGVAKVHASQEFAPALAE--AFRHDHT 213

Query: 166 LLIEQYVDGIELTCGVMGDASLDV-----TEIAVPKS-DFYSYELKYSSLNSTHV-LPAK 218
           LL E++V G E+   V+ +A+ ++      EI   +S  FY+Y+ KY   N   + +PA+
Sbjct: 214 LLAEEFVAGREIEFSVLENAAGELFVSRPGEIVPAESHGFYNYDAKYIDENGAALKVPAE 273

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL--EINVQPGMTPVSIFPE 276
           +P D+   ++ +A  A +A+GC G++R DF    L+  + +L  EIN  PG T +S++ +
Sbjct: 274 LPPDVEATMRDMAAKAFRAVGCDGMARVDFF---LTSDMRFLINEINTIPGFTDISMYSK 330

Query: 277 MAAYAGYSFRELLLWMVE 294
             A +G S+ E++  +V+
Sbjct: 331 AMAASGVSYAEVIDRLVD 348


>gi|124009981|ref|ZP_01694645.1| D-alanine--D-alanine ligase [Microscilla marina ATCC 23134]
 gi|123984003|gb|EAY24386.1| D-alanine--D-alanine ligase [Microscilla marina ATCC 23134]
          Length = 394

 Score =  126 bits (316), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 80/238 (33%), Positives = 127/238 (53%), Gaps = 22/238 (9%)

Query: 50  KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109
           K D+AF VLHG+FGEDG +Q + EL+ IPY    +L+SA+ MDK+  K V+   G+PV  
Sbjct: 100 KIDIAFPVLHGSFGEDGALQGLFELMGIPYIGCDVLSSAVGMDKIMMKMVLKESGLPVVK 159

Query: 110 SILV--NRFTMDS-------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160
            +      +  D+       +  +  P ++KP   GSS+GI      + +   +  ++ +
Sbjct: 160 YVWFYSKNWQQDTTSHIGKVEQTLGYPVIVKPANLGSSVGIKKAANREELEEAIDYAAGF 219

Query: 161 NHGDQLLIEQY-VDGIELTCGVMG---DASLDVTEIAVPKSDFYSYELKYSSL------- 209
           +H  +LL+EQ  VD  E+ C V+G   +A     E  +   +  SY+ KY +        
Sbjct: 220 SH--KLLVEQTIVDLKEINCSVLGNYENAQASTCEEPLMSGEILSYQDKYVTKGGNKGMS 277

Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPG 267
            +   LPA+IP ++  ++Q+LA    Q +GC G+SR DFL D  + +V+  EIN  PG
Sbjct: 278 GTKRKLPAEIPTEMSDKIQQLAVDTFQVLGCAGVSRIDFLLDQATNEVYVNEINTIPG 335


>gi|30018494|ref|NP_830125.1| D-alanyl-alanine synthetase A [Bacillus cereus ATCC 14579]
 gi|206972242|ref|ZP_03233189.1| D-alanine--D-alanine ligase [Bacillus cereus AH1134]
 gi|218234279|ref|YP_002365072.1| D-alanyl-alanine synthetase A [Bacillus cereus B4264]
 gi|296501057|ref|YP_003662757.1| D-alanyl-alanine synthetase A [Bacillus thuringiensis BMB171]
 gi|39931060|sp|Q81IU1|DDLB_BACCR RecName: Full=D-alanine--D-alanine ligase B; AltName:
           Full=D-Ala-D-Ala ligase B; AltName: Full=D-alanylalanine
           synthetaseB
 gi|29894034|gb|AAP07326.1| D-alanine--D-alanine ligase [Bacillus cereus ATCC 14579]
 gi|206732816|gb|EDZ49991.1| D-alanine--D-alanine ligase [Bacillus cereus AH1134]
 gi|218162236|gb|ACK62228.1| D-alanine--D-alanine ligase [Bacillus cereus B4264]
 gi|296322109|gb|ADH05037.1| D-alanyl-alanine synthetase A [Bacillus thuringiensis BMB171]
          Length = 361

 Score =  126 bits (316), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 76/249 (30%), Positives = 136/249 (54%), Gaps = 14/249 (5%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-- 109
           D+ F +LHG  GEDG VQ +LEL+ IPY  +G+LAS+  MDK+  K + +  G+      
Sbjct: 95  DVIFPLLHGPNGEDGTVQGLLELMNIPYVGNGVLASSAGMDKVVMKNIFAEAGLKQAKYA 154

Query: 110 SILVNRFTMDSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
           S + + +  + +   S        P  +KP   GSS+GI   K  + +    +++  ++ 
Sbjct: 155 SFIRSAWEKNREEAYSKVEDKLGYPCFVKPANLGSSVGINKCKNREELEDAFVEAFQFDR 214

Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVTEIA--VPKSDFYSYELKYSSLNSTHVLPAKIP 220
             ++++E+ + G E+  GV+G+     + +   VPK DFY Y+ KY   ++  ++PA++ 
Sbjct: 215 --KIIVEENIVGREVEVGVLGNDEPKCSVVGEIVPKKDFYDYKSKYIDGDTALIIPAEMT 272

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280
            +    ++R A +A Q++   G++R+DF F     +V+  E+N  PG TP S+FP +  +
Sbjct: 273 EEESNVIKRDAIIAFQSLDGAGLTRADF-FLTKDGEVYINEVNTMPGFTPFSMFPLLWQH 331

Query: 281 AGYSFRELL 289
            G  + EL+
Sbjct: 332 TGLPYPELI 340


>gi|311898521|dbj|BAJ30929.1| putative D-alanine--D-alanine ligase [Kitasatospora setae KM-6054]
          Length = 380

 Score =  126 bits (316), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 81/258 (31%), Positives = 132/258 (51%), Gaps = 29/258 (11%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+   +LHG +GEDG +Q +LEL  +PY  SG+LASA+ MDK  +K+++ S G+      
Sbjct: 117 DVVLPLLHGPWGEDGTLQGLLELSGVPYVGSGVLASAVGMDKEFTKRIIESLGLYAGEYT 176

Query: 112 LVNRFTMDS----------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN 161
           ++     +S             +  P  +KP + GSS+GI  +K      LD     +  
Sbjct: 177 VLKPREWESEAGRAAARERIAALGLPLFVKPCRAGSSIGITKVKDLAD--LDAAVEEARR 234

Query: 162 HGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKS-------DFYSYELKYSSLNSTHV 214
           H  ++++E+ V+G E+ CGV+     D    +VP         +FY +E KY  ++S+ V
Sbjct: 235 HDPKVIVEKGVEGREIECGVL--EFEDGPRASVPAEVLVDGDFEFYDFEAKY--IDSSEV 290

Query: 215 -LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL--EINVQPGMTPV 271
            +PA++      E++R A      +GC G++R DF      R   W+  E+N  PG TP+
Sbjct: 291 RIPAELTAAEQAEIRRQAVEVFDGLGCEGLARVDFFLLADGR---WMVNEVNTMPGFTPI 347

Query: 272 SIFPEMAAYAGYSFRELL 289
           S +P+M    G  + EL+
Sbjct: 348 SAYPKMWEATGVPYAELI 365


>gi|241890057|ref|ZP_04777355.1| D-alanine--D-alanine ligase [Gemella haemolysans ATCC 10379]
 gi|241863679|gb|EER68063.1| D-alanine--D-alanine ligase [Gemella haemolysans ATCC 10379]
          Length = 355

 Score =  126 bits (316), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 91/332 (27%), Positives = 159/332 (47%), Gaps = 46/332 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKV--------------------------- 33
           + ++ GG S+E  VSL + K+  +A++   + V                           
Sbjct: 6   IGIVYGGKSAEHSVSLLTAKSIINAIDKEKYNVFPIFISLEGNWARGEKITSEITDQHDL 65

Query: 34  --SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSM 91
             S  D D S  L     K D+ F VLHG  GEDG +Q +LE+++I Y  + +L+SA  M
Sbjct: 66  VFSNFDNDISGLLFEDGRKFDIVFPVLHGPNGEDGTIQGLLEIMDIAYVGNNVLSSAAGM 125

Query: 92  DKMRSKQVVSSCGVPVCPSILVNRFTMDSQH--LISP-------PYVIKPLKGGSSLGII 142
           DK+  KQ+ ++  +P  P +    +T  ++   LI+        P  +KP   GSS+GI 
Sbjct: 126 DKVVMKQLFAAYDLPQLPYVHFIEYTWKNKKEALIAEINENLKYPLFVKPANLGSSVGIS 185

Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQ-YVDGIELTCGVMGDASLDVTE----IAVPKS 197
               +  +   + ++  ++   ++++EQ  V   E+   V+G   +  T+    + +  +
Sbjct: 186 RCNDEAELVKGIEEALKFDK--KIVVEQGAVGAKEIEVAVLGYNEVKTTDPGEIVNISST 243

Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
           +FY YE KY+   S   +PA I   +Y + + +A  A +AI   G+ R+DF +     ++
Sbjct: 244 EFYDYETKYTDGQSRMDIPAPIDTTLYPKFREMAATAFRAISGSGLVRADFFYTK-EGEI 302

Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           F  E+N  PG TP S+FP + A    S+ E++
Sbjct: 303 FINEVNTMPGFTPFSMFPSLWANMNVSYSEII 334


>gi|332652706|ref|ZP_08418451.1| D-alanine--D-lactate ligase [Ruminococcaceae bacterium D16]
 gi|332517852|gb|EGJ47455.1| D-alanine--D-lactate ligase [Ruminococcaceae bacterium D16]
          Length = 347

 Score =  126 bits (316), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 105/339 (30%), Positives = 158/339 (46%), Gaps = 51/339 (15%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFK-----VSQ-------------IDVDRSVG- 43
           +  GG S+E  VSL S  A  + L+ + F+     ++Q             I  DR  G 
Sbjct: 8   IFFGGCSTEYGVSLQSAHAVLTHLDRSRFEPLLVGITQSGGWLYYTGAPDAIPADRWQGT 67

Query: 44  ------LVLA--------------HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                 LVL+               L  D AF VLHG  GEDG +Q +LEL  IP    G
Sbjct: 68  ECVPCTLVLSRGVSHLLLLDGSGTQLSFDAAFPVLHGKNGEDGTLQGLLELAGIPVIGCG 127

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT-MD----SQHLISPPYVIKPLKGGSS 138
            L+SAL MDK R+ ++ +  GV V  S++  R   MD    +   +  P  +KP++ GSS
Sbjct: 128 ALSSALCMDKDRAHKLAALAGVKVPRSVVFRRSAGMDEIKAAAAKLGYPIFVKPVRAGSS 187

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD---VTEIAVP 195
            GI  +   + +P     + + +   +LL+E+ + G E+ C V+G   L    V EI + 
Sbjct: 188 FGITRVTGPEGLPGAAAAAFANDR--ELLLEEAIPGFEVGCAVLGTDELTVGAVDEIELS 245

Query: 196 KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255
           +  F+ +E KY+   S    PA+I      E+Q +A   ++A+ C+  +R D    P   
Sbjct: 246 QG-FFDFEEKYTLKTSAIHCPARIHPLKAAEIQAVAKAIYRALDCKDFARVDLFLTPEGE 304

Query: 256 KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            VF  E+N  PG T  S +P M   AG  F  L+  ++E
Sbjct: 305 IVFN-EVNTIPGFTAHSRYPNMMKAAGLDFTTLITRIIE 342


>gi|325068478|ref|ZP_08127151.1| D-alanyl-alanine synthetase A [Actinomyces oris K20]
          Length = 388

 Score =  125 bits (315), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 78/262 (29%), Positives = 133/262 (50%), Gaps = 22/262 (8%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+   +LHG +GEDG +Q +LE++ IPY   G+LASA  MDK  +K ++ + G+   P +
Sbjct: 119 DVVLPLLHGPYGEDGTIQGMLEMMGIPYVGCGVLASAAGMDKQVTKVLLGAAGIATAPHV 178

Query: 112 LV--NRFTMDSQHLISP------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
           +V  + +  D + ++        P  +KP + GSSLGI  + + + +   +  + + +  
Sbjct: 179 VVGPHAWKRDPEAILEACRSLTYPLFVKPARAGSSLGISKVDRPEDLAGAIKAARAVD-- 236

Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVP----------KSDFYSYELKYSSLNSTH 213
            ++L+E  + G E+   V+     D   +A P            +FY YE KY + ++  
Sbjct: 237 PKVLVESGIVGREVEVAVLQGRGDDAPRVAEPGEIAMDASQGAGEFYDYETKYLAHDAVA 296

Query: 214 -VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
            V PA+I  +    +   A  A +A+GC G++R DF        V   EIN  PG TP S
Sbjct: 297 MVCPARIDPEARALLMDTAARAFEALGCEGLARVDFFLTEAGEAVVN-EINTMPGFTPFS 355

Query: 273 IFPEMAAYAGYSFRELLLWMVE 294
           ++P M   +G  + EL+  ++E
Sbjct: 356 MYPYMWQVSGLGYTELVSELIE 377


>gi|291326269|ref|ZP_06123809.2| D-alanine--D-alanine ligase A [Providencia rettgeri DSM 1131]
 gi|291315062|gb|EFE55515.1| D-alanine--D-alanine ligase A [Providencia rettgeri DSM 1131]
          Length = 372

 Score =  125 bits (315), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 99/349 (28%), Positives = 167/349 (47%), Gaps = 61/349 (17%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD--------------------- 39
           + V+ GG S+E EVSL S K   + L+   F V  + ++                     
Sbjct: 11  VGVIFGGRSTEHEVSLQSAKNIINGLDRNKFDVCLLGINKEGQWHEYNESDFLLHGDDPS 70

Query: 40  --------RSVGLV----------LAHLKP----DLAFNVLHGNFGEDGLVQAILELLEI 77
                   R++ LV          L   KP    D+ F ++HGN GEDG +Q +L +  +
Sbjct: 71  RIALNTPKRAIALVPGKTSEQFISLEDAKPLPQIDVIFPIVHGNLGEDGSLQGLLRMANL 130

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFTMDSQHLISP---PYVIK 131
           P+   G+L S+  MDK  +K+++   G+ + P I V    R T + +  ++    P  IK
Sbjct: 131 PFVGPGVLGSSACMDKDVTKRLLRDAGLNIAPFITVLKNERATTEYEATVAQLGLPLFIK 190

Query: 132 PLKGGSSLGIIVIKKDQSI--PLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA---S 186
           P   GSS+GI  +  +      LD     ++    ++LIE  V G E+ C V+G+    +
Sbjct: 191 PANQGSSVGISKVSTESEFYAALDF----AFLFDMKVLIESAVKGREIECAVLGNEEPLA 246

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
               EI +  S FY+Y  KY   N   V+ PA++   +  +++ +A  A++A+ C G+SR
Sbjct: 247 SPCGEIVLHDS-FYAYHTKYIDENGASVVAPAQLDAAVSDKIREIALSAYRALNCSGMSR 305

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            D +F   +  V   EIN  PG T +S++P++   AG ++ +L+  ++E
Sbjct: 306 VD-VFLTENNDVVINEINTLPGFTNISMYPKLWQQAGMTYPQLISRLIE 353


>gi|313899544|ref|ZP_07833053.1| D-ala D-ala ligase N-terminal domain protein [Clostridium sp. HGF2]
 gi|312955651|gb|EFR37310.1| D-ala D-ala ligase N-terminal domain protein [Clostridium sp. HGF2]
          Length = 355

 Score =  125 bits (315), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 77/262 (29%), Positives = 127/262 (48%), Gaps = 17/262 (6%)

Query: 45  VLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCG 104
               ++ D  F +LHG  GEDG +Q + EL  IPY   G ++SA+ MDK  +  V+   G
Sbjct: 92  TFTRIEVDCIFPILHGKNGEDGTIQGLFELSGIPYVGCGHMSSAICMDKEMAHIVMEHAG 151

Query: 105 VPVCPSILV--------NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
           +   P + V         +    ++  +  P  IKP   GSS GI  ++        +  
Sbjct: 152 ISCAPFVCVYEADDLDYRKVYEHAKETLGLPIFIKPANAGSSFGIHRMESFDGFEEAMKD 211

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGD-----ASLDVTEIAVPKSDFYSYELKYSSLNS 211
           +   +   ++++E  ++G E+   VMG+      S+D  E A P   F+ YE KY  ++S
Sbjct: 212 AFYHDGKGKVILETTIEGFEIGVAVMGNKELFAGSVDEIETAAP---FFDYEGKYEMVDS 268

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271
               PA+I   +++E + +A  A++A+ C+G++R D    P    +   E+N  PG T  
Sbjct: 269 HIYCPARISPKLFEEAREIAKKAYRAMNCKGMTRVDMFVTP-EDTIILNEVNTIPGFTDT 327

Query: 272 SIFPEMAAYAGYSFRELLLWMV 293
           S +P M   AG  F EL+  +V
Sbjct: 328 SRYPTMMKEAGIPFPELIDKLV 349


>gi|90962058|ref|YP_535974.1| D-alanyl-alanine synthetase A [Lactobacillus salivarius UCC118]
 gi|122448837|sp|Q1WT60|DDL_LACS1 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|90821252|gb|ABD99891.1| D-alanine--D-alanine ligase [Lactobacillus salivarius UCC118]
          Length = 378

 Score =  125 bits (315), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 97/348 (27%), Positives = 168/348 (48%), Gaps = 62/348 (17%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI------------------------ 36
           +A+L GG SSE +VS  S      AL+   + VS                          
Sbjct: 8   IALLFGGNSSEHDVSKRSAHNIYDALDKDKYDVSVFMFTKKGFLLGNKDSMRIFDGENED 67

Query: 37  --------DVDRSVGLV----LAHLKP-DLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                   DVD S  L     LA +K  D+ + V+HGN GEDG VQ +  LL  P+  SG
Sbjct: 68  DVVTEVIKDVDFSNPLANIQNLAEVKDVDVFYPVIHGNMGEDGTVQGLFRLLNKPWIGSG 127

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYV-----------IKP 132
           + +S +S DK  +K++++  G+     +LV       ++    PY            +KP
Sbjct: 128 VASSGVSFDKDLTKKLLTLNGIRNTKYVLVT-----PENKADYPYAKVAEELGETLFVKP 182

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTE 191
            + GSS+GI  ++ ++     L     +++  ++L+E+ +    E+ C V+G+  +  ++
Sbjct: 183 ARQGSSVGIHKVRNEEEYNAALEDGFKYDY--KILVEEAIKNPREVECSVLGNRDIKASK 240

Query: 192 ---IAVPKS-DFYSYELKYSSLNS-THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRS 246
              I +P+S DFY Y  K+   +     +P K+P  + KE+Q+++  A +A+  RG++R 
Sbjct: 241 LGAIRIPESDDFYDYNNKFVDASGVVFEMPIKLPEKLTKEIQQMSLDAFRALDNRGLARM 300

Query: 247 DFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           DFL D      F  E+N  PG T +S++P++   +G S+ EL+  +++
Sbjct: 301 DFLVDKNDVPYFG-EVNTLPGFTNISLYPQLWEVSGISYSELIDQLIQ 347


>gi|190572289|ref|YP_001970134.1| D-alanyl-alanine synthetase A [Stenotrophomonas maltophilia K279a]
 gi|190010211|emb|CAQ43819.1| putative D-alanine--D-alanine ligase A (D-alanylalanine synthetase
           A) (D-ala-D-ala ligase A) [Stenotrophomonas maltophilia
           K279a]
          Length = 404

 Score =  125 bits (315), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 91/346 (26%), Positives = 163/346 (47%), Gaps = 55/346 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS------------------- 41
           + ++ GG SSE EVSL S K    AL+   F+   + +D+                    
Sbjct: 46  VGIIFGGKSSEHEVSLQSAKNILDALDRERFEPVLVGIDKQGQWHLSQPDTFLINADDPS 105

Query: 42  --------------VGLVLAHLKP----------DLAFNVLHGNFGEDGLVQAILELLEI 77
                          G   A L+P          D+   ++HG  GEDG +Q +L ++ +
Sbjct: 106 LIALHRSGQSLAVRPGAEQAQLQPSDAASALGQIDVVLPIVHGPLGEDGALQGLLRMINL 165

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF---TMDSQHLISP---PYVIK 131
           P+  S +L SA++MDK  +K+++   G+ V P + + R     +D+  +I+    P  +K
Sbjct: 166 PFVGSPVLGSAVAMDKDVTKRLLRDAGLQVAPWLCIRRHEAAEVDADAVIAQLGLPLFVK 225

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA--SLDV 189
           P   GSS+G+  +K        L  +  ++H  ++L+E  V G E+ C V+G+      V
Sbjct: 226 PANQGSSVGVSKVKDAAGFAEALALALRYDH--KVLVESAVVGREIECAVLGNEHPQASV 283

Query: 190 TEIAVPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               V   +FY+Y+ KY + N    V+PA I       ++++A  A+Q + C G++R D 
Sbjct: 284 CGEVVVHDEFYAYDTKYINANGADVVVPADIDAATQARIRQIARQAYQTLECAGMARVD- 342

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           +F     ++   E+N  PG T +S++P++   +G  +  L+  ++E
Sbjct: 343 VFLTADGEIVINEVNTLPGFTRISMYPKLWGASGVDYTTLITRLIE 388


>gi|329947089|ref|ZP_08294465.1| D-ala D-ala ligase protein [Actinomyces sp. oral taxon 170 str.
           F0386]
 gi|328526266|gb|EGF53283.1| D-ala D-ala ligase protein [Actinomyces sp. oral taxon 170 str.
           F0386]
          Length = 388

 Score =  125 bits (315), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 76/262 (29%), Positives = 133/262 (50%), Gaps = 22/262 (8%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+   +LHG +GEDG +Q +LE++ + Y   G+LASA  MDK  +K ++ + G+   P +
Sbjct: 119 DVVLPLLHGPYGEDGTIQGMLEMMGVSYVGCGVLASAAGMDKQVTKVLLGAAGIATAPHV 178

Query: 112 LVN--------RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
           +V            +D+   +S P  +KP + GSSLGI  +++ + +P  +  + + +  
Sbjct: 179 VVGPHAWKRDPEVILDACRSLSYPLFVKPARAGSSLGISKVERPEDLPGAIEAARAIDP- 237

Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVP----------KSDFYSYELKYSSLNS-T 212
            ++L+E  + G E+   V+     D   +A P            +FY +E KY + ++  
Sbjct: 238 -KVLVESGIVGREVEVAVLEGRGDDAPRVAEPGEIAMDASHGAGEFYDFETKYLAHDAVA 296

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
            V PA+I  +    +   A  A +A+GC G++R DF        V   EIN  PG TP S
Sbjct: 297 MVCPARIGPEERALIMDTAARAFEAVGCEGLARVDFFLTEAGEAVVN-EINTMPGFTPFS 355

Query: 273 IFPEMAAYAGYSFRELLLWMVE 294
           ++P M   +G  + +L+  ++E
Sbjct: 356 MYPYMWQVSGLGYTDLVSELIE 377


>gi|227543554|ref|ZP_03973603.1| D-alanine--D-alanine ligase [Lactobacillus reuteri CF48-3A]
 gi|300908262|ref|ZP_07125728.1| D-alanine--D-alanine ligase [Lactobacillus reuteri SD2112]
 gi|227186481|gb|EEI66552.1| D-alanine--D-alanine ligase [Lactobacillus reuteri CF48-3A]
 gi|300894689|gb|EFK88045.1| D-alanine--D-alanine ligase [Lactobacillus reuteri SD2112]
          Length = 378

 Score =  125 bits (315), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 100/345 (28%), Positives = 172/345 (49%), Gaps = 56/345 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVS-------------------------- 34
           +A+L GG SSE +VS  S      AL+   + VS                          
Sbjct: 7   IALLFGGNSSEHDVSKRSAHNIYDALDKEKYDVSLFMFTKDGILLGNEDSQKIFDGEPED 66

Query: 35  --------QIDVDRSVGLVLA---HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                   ++D+   +  ++A     + D  F V+HGN GEDG +Q + +LL  PY  S 
Sbjct: 67  QVVAEAYQKMDMSSPLAPIMALNEQKEIDFFFPVIHGNLGEDGTIQGLFKLLNKPYVGSN 126

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILV---NR----FTMDSQHLISPPYVIKPLKGG 136
           I ASA+S DK  +K+++S  G+   P ++V   NR    ++   + L +  +V KP K G
Sbjct: 127 IAASAMSFDKDLTKKIISQAGIRNTPYVVVTPENRADYSWSRIEEKLGNLTFV-KPAKQG 185

Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDA---SLDVTEI 192
           SS+GI  +   +     L  +  +++  ++L+EQ + +  E+   ++G+    +  +  +
Sbjct: 186 SSVGIHRVTNAEEYEKALDDAFKYDY--KILVEQGIANPQEIEISILGNEHPIASKLGAV 243

Query: 193 AVPKSD-FYSYELKYSSLNS-THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
            VPK D FY YE K+   +     LP K+P  +  E+  +A  A++A+G +G++R DFL 
Sbjct: 244 RVPKDDPFYDYENKFVDASGVVFELPVKLPQYLVDEITDMALKAYKALGMKGMARIDFLV 303

Query: 251 DPLSRKVFWL-EINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           D  S  V +L E N  PG T +S++P+M   +G S+ +L+  +++
Sbjct: 304 D--SNNVPYLGEPNTLPGFTNISLYPQMWEVSGISYSDLIDRLIQ 346


>gi|227891078|ref|ZP_04008883.1| D-alanine--D-alanine ligase [Lactobacillus salivarius ATCC 11741]
 gi|227866952|gb|EEJ74373.1| D-alanine--D-alanine ligase [Lactobacillus salivarius ATCC 11741]
          Length = 382

 Score =  125 bits (315), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 97/348 (27%), Positives = 168/348 (48%), Gaps = 62/348 (17%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI------------------------ 36
           +A+L GG SSE +VS  S      AL+   + VS                          
Sbjct: 12  IALLFGGNSSEHDVSKRSAHNIYDALDKDKYDVSVFMFTKKGFLLGNKDSMRIFDGENED 71

Query: 37  --------DVDRSVGLV----LAHLKP-DLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                   DVD S  L     LA +K  D+ + V+HGN GEDG VQ +  LL  P+  SG
Sbjct: 72  DVVAEVIKDVDFSNPLANIQNLAEVKDVDVFYPVIHGNMGEDGTVQGLFRLLNKPWIGSG 131

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYV-----------IKP 132
           + +S +S DK  +K++++  G+     +LV       ++    PY            +KP
Sbjct: 132 VTSSGVSFDKDLTKKLLTLNGIRNTKYVLVT-----PENKADYPYAKVAEELGETLFVKP 186

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTE 191
            + GSS+GI  ++ ++     L     +++  ++L+E+ +    E+ C V+G+  +  ++
Sbjct: 187 ARQGSSVGIHKVRNEEEYNAALEDGFKYDY--KILVEEAIKNPREVECSVLGNRDIKASK 244

Query: 192 ---IAVPKS-DFYSYELKYSSLNS-THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRS 246
              I +P+S DFY Y  K+   +     +P K+P  + KE+Q+++  A +A+  RG++R 
Sbjct: 245 LGAIRIPESDDFYDYNNKFVDASGVVFEMPIKLPEKLTKEIQQMSLDAFRALDNRGLARM 304

Query: 247 DFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           DFL D      F  E+N  PG T +S++P++   +G S+ EL+  +++
Sbjct: 305 DFLVDENDVPYFG-EVNTLPGFTNISLYPQLWEVSGISYSELIDQLIQ 351


>gi|312868929|ref|ZP_07729110.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus oris
           PB013-T2-3]
 gi|311095547|gb|EFQ53810.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus oris
           PB013-T2-3]
          Length = 377

 Score =  125 bits (315), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 101/348 (29%), Positives = 171/348 (49%), Gaps = 62/348 (17%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVS-------------------------- 34
           +A+L GG SSE +VS  S      A++   + VS                          
Sbjct: 7   VALLFGGNSSEHDVSKRSAHNIYDAMDKDKYDVSLFMFTKDGILLDNAYSQRIFDGEPED 66

Query: 35  --------QIDVDRSVGLVLA--HLKP-DLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                    +D+DR +  ++A   L+  D  + V+HGN GEDG +Q + +LL+ PY  SG
Sbjct: 67  QVVADAYQHMDLDRPLAPIMALNELEAVDFFYPVIHGNLGEDGTIQGLFKLLKKPYVGSG 126

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVN----------RFTMDSQHLISPPYVIKPL 133
           I ASALS DK  +K++++  G+   P +L+           R   +  +LI     IKP 
Sbjct: 127 ISASALSFDKDLTKKMLNEAGIRNTPYVLLTPENQAEYSWGRLEEELGNLI----FIKPA 182

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGD---ASLDV 189
           + GSS+GI  +   +     L  +  ++   ++L E+ +D   E+   ++G+    +  +
Sbjct: 183 RQGSSVGIHRVTNAEEYAAALKDAFKYDF--KVLAEKGLDRPQEIEISILGNEHPVASKL 240

Query: 190 TEIAVPKSD-FYSYELKYSSLNS-THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
             + VP+SD FY YE K+   +     LP K+P  +  E+  +A  A++ +G +G+SR D
Sbjct: 241 GAVRVPESDPFYDYENKFVDASGVVFELPVKLPQYLTDEITEMALKAYRVLGMKGLSRID 300

Query: 248 FLFDPLSRKVFWL-EINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           FL D  S  + +L E N  PG T +S++P+M   +G S+ +L+  ++E
Sbjct: 301 FLVD--SNNIPYLSEPNTLPGFTNISLYPQMWEVSGISYSDLIDRLIE 346


>gi|301300875|ref|ZP_07207047.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus
           salivarius ACS-116-V-Col5a]
 gi|300214754|gb|ADJ79170.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)
           (D-Ala-D-Ala ligase) [Lactobacillus salivarius CECT
           5713]
 gi|300851474|gb|EFK79186.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus
           salivarius ACS-116-V-Col5a]
          Length = 378

 Score =  125 bits (315), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 97/348 (27%), Positives = 168/348 (48%), Gaps = 62/348 (17%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI------------------------ 36
           +A+L GG SSE +VS  S      AL+   + VS                          
Sbjct: 8   IALLFGGNSSEHDVSKRSAHNIYDALDKDKYDVSVFMFTKKGFLLGNKDSMRIFDGENED 67

Query: 37  --------DVDRSVGLV----LAHLKP-DLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                   DVD S  L     LA +K  D+ + V+HGN GEDG VQ +  LL  P+  SG
Sbjct: 68  DVVAEVIKDVDFSNPLANIQNLAEVKDVDVFYPVIHGNMGEDGTVQGLFRLLNKPWIGSG 127

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYV-----------IKP 132
           + +S +S DK  +K++++  G+     +LV       ++    PY            +KP
Sbjct: 128 VASSGVSFDKDLTKKLLTLNGIRNTKYVLVT-----PENKADYPYAKVAEELGETLFVKP 182

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTE 191
            + GSS+GI  ++ ++     L     +++  ++L+E+ +    E+ C V+G+  +  ++
Sbjct: 183 ARQGSSVGIHKVRNEEEYNAALEDGFKYDY--KILVEEAIKNPREVECSVLGNRDIKASK 240

Query: 192 ---IAVPKS-DFYSYELKYSSLNS-THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRS 246
              I +P+S DFY Y  K+   +     +P K+P  + KE+Q+++  A +A+  RG++R 
Sbjct: 241 LGAIRIPESDDFYDYNNKFVDASGVVFEMPIKLPEKLTKEIQQMSLDAFRALDNRGLARM 300

Query: 247 DFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           DFL D      F  E+N  PG T +S++P++   +G S+ EL+  +++
Sbjct: 301 DFLVDENDVPYFG-EVNTLPGFTNISLYPQLWEVSGISYSELIDQLIQ 347


>gi|123969037|ref|YP_001009895.1| D-alanyl-alanine synthetase A [Prochlorococcus marinus str. AS9601]
 gi|166198501|sp|A2BSM7|DDL_PROMS RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|123199147|gb|ABM70788.1| D-alanine--D-alanine ligase [Prochlorococcus marinus str. AS9601]
          Length = 355

 Score =  125 bits (315), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 98/346 (28%), Positives = 163/346 (47%), Gaps = 56/346 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDA---------GFKVSQ----IDVDRSVGLVLA 47
           + ++ GG S+E EVS+SS K    A +            F +++    +D D S  +++ 
Sbjct: 9   IGLIFGGNSNEHEVSISSAKTVFQAFKSEINKERFTIRAFYINKYGDWLDSDSSEKILID 68

Query: 48  HLKP-------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
             K                          D+ F +LHG  GEDG +  +L   + P    
Sbjct: 69  ESKNKNTTKKQIFNQEKINFLDGVDFQNVDVWFPLLHGINGEDGSIHGLLRFTKKPLVGC 128

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL-----------ISPPYVIK 131
           GI+ SAL MDK+  K + S+  +P    ++     ++ + +           ++ P  +K
Sbjct: 129 GIIGSALGMDKILMKIIFSNLKIPQVNYLVFQNQDLNDEEVKNKLIHEILKKLNFPVFVK 188

Query: 132 PLKGGSSLGI-IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190
           P   GSSLGI  VI K + IP       +      +LIE+ ++  E+ CG++G++ L  +
Sbjct: 189 PSNSGSSLGISKVINKSEIIPA---LEKARGIDPSILIEEGLEVREIECGIIGNSKLLTS 245

Query: 191 EIAVP--KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           EI     KSD+Y Y  KY S N+  ++PA+I   I KE++ +A  + +A+   G +R DF
Sbjct: 246 EIGEVNYKSDWYDYNSKYHS-NNKIIIPAEIDSKISKEIKEIAIKSCRALNIFGFARVDF 304

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             +  S K+F  EIN  PG T  S+FP +   +G    +L+  +V+
Sbjct: 305 FLEKSSNKIFLNEINTIPGFTKNSMFPMLWKASGLKIEQLVAKLVD 350


>gi|322516239|ref|ZP_08069171.1| D-alanine-D-alanine ligase [Streptococcus vestibularis ATCC 49124]
 gi|322125303|gb|EFX96668.1| D-alanine-D-alanine ligase [Streptococcus vestibularis ATCC 49124]
          Length = 348

 Score =  125 bits (314), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 90/329 (27%), Positives = 160/329 (48%), Gaps = 41/329 (12%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH-------------- 48
           +L GG S+EREVS+ S ++   A++ + F+V    + +S   +                 
Sbjct: 8   LLYGGRSAEREVSVLSAESVMRAVDYSAFEVKTYFITQSGDFIKTQEFTETPGDDEKLMT 67

Query: 49  ---------LKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
                    +KP        + F VLHG  GEDG +Q  LE L++PY  + +L+S+++MD
Sbjct: 68  NDTVVASQAIKPSDIYEEGAVVFPVLHGPMGEDGSIQGFLETLKLPYVGTNVLSSSVAMD 127

Query: 93  KMRSKQVVSSCGVP-VCPSILVNRFTMDSQ-----HLISPPYVIKPLKGGSSLGIIVIKK 146
           K+ +K ++   GVP V  ++ +    ++S        ++ P  +KP   GSS+GI   K 
Sbjct: 128 KIMTKHILEVAGVPQVAYTVFIEGEDLESAVAETLEKLTFPVFVKPANMGSSVGI--SKA 185

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD--FYSYEL 204
           +    L      +  +  ++LIEQ V   E+  G++G+ ++  T+      D  FY Y+ 
Sbjct: 186 ENEAELRAAIDLALKYDSRILIEQGVVAREIEVGILGNTTVKTTDPGEVVKDVAFYDYQA 245

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           KY     T  +PA +P ++  +++  A  A +A+G  G++R DF        ++  E+N 
Sbjct: 246 KYIDNKITMDIPAHVPAEVMAQMRAYAAKAFRALGGCGLARCDFFLTE-DGAIYLNELNT 304

Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            PG T  S++P +    G S+ +L+  +V
Sbjct: 305 MPGFTQWSMYPLLWENMGLSYSDLIKELV 333


>gi|296119642|ref|ZP_06838200.1| D-alanine--D-alanine ligase [Corynebacterium ammoniagenes DSM
           20306]
 gi|295967525|gb|EFG80792.1| D-alanine--D-alanine ligase [Corynebacterium ammoniagenes DSM
           20306]
          Length = 358

 Score =  125 bits (314), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 83/263 (31%), Positives = 140/263 (53%), Gaps = 21/263 (7%)

Query: 48  HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV 107
           H   D+ F  LHG  GEDG VQ + E+  IPY  +G+++SA+ MDK   ++++ + G+PV
Sbjct: 95  HADIDVVFPALHGVNGEDGTVQGVFEMAGIPYVGTGVMSSAVCMDKEFMRKLMVAEGLPV 154

Query: 108 CPSILVNRFT----MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
              +++   T     +  HL  P +V KP +GGSS+G+  +     +P  + ++++++  
Sbjct: 155 TRDVILRGRTELTDAEKDHLGLPVFV-KPARGGSSIGVSKVNTWDELPAAIAEAAAFD-- 211

Query: 164 DQLLIEQYVDGIELTCGVM----GD------ASLDVTEIAVPKSDFYSYELKYSSLNSTH 213
           D++++E  + G E+  GV+    G+      A L+ TE +     FY ++ KY     T 
Sbjct: 212 DKVIVEAELVGAEVEVGVLEYPTGELVASVPAKLNGTEDS--DEGFYGFDTKYLDNTVTA 269

Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273
            +PA       K +Q LA    QA+ C G+SR DF      +     EIN  PG TP+S+
Sbjct: 270 TIPAPFDEATTKALQDLAVETFQALNCEGLSRVDFFV--TEQGPMINEINTLPGFTPISM 327

Query: 274 FPEMAAYAGYSFRELLLWMVEDA 296
           +P++   +G S+ ELL  ++  A
Sbjct: 328 YPQVFLASGVSYPELLDTLIATA 350


>gi|301051968|ref|YP_003790179.1| D-alanylalanine synthetase [Bacillus anthracis CI]
 gi|300374137|gb|ADK03041.1| D-alanylalanine synthetase [Bacillus cereus biovar anthracis str.
           CI]
          Length = 361

 Score =  125 bits (314), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 77/249 (30%), Positives = 135/249 (54%), Gaps = 14/249 (5%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-- 109
           D+ F +LHG  GEDG VQ +LEL+ IPY  +G+LASA  MDK+  K + +  G+      
Sbjct: 95  DVIFPLLHGPNGEDGTVQGLLELMNIPYVGNGVLASAAGMDKVVMKNIFAEAGLKQAKYA 154

Query: 110 SILVNRFTMDS-------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
           S + + +  D        + ++  P  +KP   GSS+GI   K  + +     ++  ++ 
Sbjct: 155 SFIRSGWEKDRETAYEKVEEVLGYPCFVKPANLGSSVGINKCKNREELENAFEEAFQFDR 214

Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVTEIA--VPKSDFYSYELKYSSLNSTHVLPAKIP 220
             ++++E+ + G E+  GV+G+     + +   VPK DFY Y+ KY   ++  ++PA+  
Sbjct: 215 --KIIVEENIIGREVEVGVLGNDEPKCSVVGEIVPKKDFYDYKSKYIDGDTALIIPAERT 272

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280
            +    ++R A +A Q++   G++R+DF F     +V+  E+N  PG TP S+FP +  +
Sbjct: 273 EEESNVIKRDAIVAFQSLDGAGLTRADF-FLTKDGEVYINEVNTMPGFTPFSMFPLLWQH 331

Query: 281 AGYSFRELL 289
            G  + EL+
Sbjct: 332 TGLPYPELI 340


>gi|55821559|ref|YP_140001.1| D-alanyl-alanine synthetase A [Streptococcus thermophilus LMG
           18311]
 gi|81560260|sp|Q5M355|DDL_STRT2 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|55737544|gb|AAV61186.1| D-alanine-D-alanine ligase [Streptococcus thermophilus LMG 18311]
          Length = 348

 Score =  125 bits (314), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 89/331 (26%), Positives = 165/331 (49%), Gaps = 45/331 (13%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH-------------- 48
           +L GG S+EREVS+ S ++   A++   F+V    + +S   +                 
Sbjct: 8   LLYGGRSAEREVSVLSAESVMRAVDYNAFEVKTYFITQSGDFIKTQEFIETPGDDEKLMT 67

Query: 49  ---------LKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
                    +KP        + F VLHG  GEDG +Q  LE L++PY  + +L+S+++MD
Sbjct: 68  NDTVEASQAIKPSDIYEEDAVVFPVLHGPMGEDGSIQGFLETLKLPYVGTNVLSSSVAMD 127

Query: 93  KMRSKQVVSSCGVP-VCPSILVNRFTMDSQ-----HLISPPYVIKPLKGGSSLGIIVIKK 146
           K+ +K+++   GVP V  ++ +    +++        ++ P  +KP   GSS+GI   + 
Sbjct: 128 KIMTKRILEVAGVPQVAYTVYIEGEDLEAAVAETLEKLTFPVFVKPANMGSSVGISKAEN 187

Query: 147 DQSI--PLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD--FYSY 202
           +  +   +DL    +  +  ++LIEQ V   E+  G++G+ ++  T+      D  FY Y
Sbjct: 188 ESELRSAIDL----ALKYDSRILIEQGVVAREIEVGILGNTTVKTTDPGEVVKDVAFYDY 243

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
           + KY     T  +PA++P+++  +++  A  A +A+G  G++R DF        ++  E+
Sbjct: 244 QAKYIDNKITMDIPARVPVEVMTQMRAYAAKAFRALGGCGLARCDFFLTE-DGAIYLNEL 302

Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           N  PG T  S++P +    G S+ +L+  +V
Sbjct: 303 NTMPGFTQWSMYPLLWENMGLSYSDLIKELV 333


>gi|111222491|ref|YP_713285.1| D-alanine--D-alanine ligase B [Frankia alni ACN14a]
 gi|111150023|emb|CAJ61718.1| D-alanine--D-alanine ligase B [Frankia alni ACN14a]
          Length = 321

 Score =  125 bits (314), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 95/287 (33%), Positives = 145/287 (50%), Gaps = 18/287 (6%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62
           +L GG+S EREVSL SG     AL   G +    DVD +    LA   PD+ F VLHG  
Sbjct: 9   ILAGGLSPEREVSLRSGGRLRDALTRIGVEAELADVDAATLPALAADPPDVVFPVLHGTS 68

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---FTMD 119
           GEDG ++ +L+L ++PY  +   A  ++ DK  +K  V + GV    ++ + R     + 
Sbjct: 69  GEDGTIREVLDLYDLPYVGAAPPACRVAFDKATAKAAVGAAGVATPAAVTLPREAFHDLG 128

Query: 120 SQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
           +  LI         P V+KP  GGS+ G+  +     +   L+  S + + D  LIE+ V
Sbjct: 129 AAALIERIVARLGLPVVVKPRAGGSAFGVSRVDDAGGLAEALM--SCFGYHDSALIERAV 186

Query: 173 DGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
            G+E+T GV+    G  +L   EI  P +  Y Y  +Y++  +    PA++   + +   
Sbjct: 187 SGVEITVGVVEVGDGPVALPAVEIE-PAAGVYDYAARYTAGATAFFTPARLDDAVLRAAA 245

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275
             A  AH+ +G R +SR+D + D      F LE+NV PGMT  S +P
Sbjct: 246 ATAVTAHRVLGLRDLSRTDMIVDAAGVAQF-LEVNVAPGMTDTSTWP 291


>gi|308067503|ref|YP_003869108.1| D-alanine--D-alanine ligase [Paenibacillus polymyxa E681]
 gi|305856782|gb|ADM68570.1| D-alanine--D-alanine ligase [Paenibacillus polymyxa E681]
          Length = 362

 Score =  125 bits (314), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 94/339 (27%), Positives = 152/339 (44%), Gaps = 48/339 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFK------------------------VSQI 36
           + ++ GG S E EVSL +  A  +A     ++                        V Q+
Sbjct: 8   VGLVYGGKSGEHEVSLQTAYAVMNAFNYEKYEIIPFYITKAGDWRRGALLSAPLASVDQL 67

Query: 37  DVDRSVGLVLAHLKP-----------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
            ++R+ G   A L             D+ F +LHG FGEDG +Q + E+ ++PY  +G+L
Sbjct: 68  KLERAEGGTKAALDTLFGKLYGEQTLDVLFPLLHGTFGEDGTIQGLFEMADMPYVGAGVL 127

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISP-------PYVIKPLKGG 136
           ASA  MDK   K++    G+P       N  ++   S  L+         P  +KP   G
Sbjct: 128 ASAAGMDKGVMKKLFEHAGLPQVKYCYFNSTQWAQTSHDLVRNMETELGYPCFVKPANLG 187

Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS--LDVTEIAV 194
           SS+GI   K +    L+     +     ++++E+YVD  E+   V+G+      V    V
Sbjct: 188 SSVGIS--KANNREELEKAVDLALQFDLKVIVEEYVDAREIEVSVLGNDEPIASVPGEIV 245

Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
             SD+Y Y  KY+   S  ++PA +  ++   ++  A  A +A+   GISR+DF      
Sbjct: 246 SSSDYYDYAAKYTDGQSEMLIPAPLDEEVADRIREAALQAFRALEGCGISRADFFVRRSD 305

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
             +   E+N  PG TP S++P +    G S+  LL  M+
Sbjct: 306 GHILINEVNTMPGFTPFSMYPLLWRETGVSYASLLDRMI 344


>gi|171741431|ref|ZP_02917238.1| hypothetical protein BIFDEN_00514 [Bifidobacterium dentium ATCC
           27678]
 gi|283455223|ref|YP_003359787.1| D-alanine--D-alanine ligase [Bifidobacterium dentium Bd1]
 gi|171277045|gb|EDT44706.1| hypothetical protein BIFDEN_00514 [Bifidobacterium dentium ATCC
           27678]
 gi|283101857|gb|ADB08963.1| ddlA D-alanine--D-alanine ligase [Bifidobacterium dentium Bd1]
          Length = 378

 Score =  125 bits (314), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 80/278 (28%), Positives = 140/278 (50%), Gaps = 32/278 (11%)

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV 105
           L H+  D    VLHG +GEDG +Q + E++ +PY   G+ ASA  MDK  +K ++++ G+
Sbjct: 100 LGHV--DAVLPVLHGPYGEDGTIQGLFEMMNVPYVGCGVFASAACMDKHYTKVLLAAAGI 157

Query: 106 PVCPSILVN--------RFTMDSQHLISP--------PYVIKPLKGGSSLGIIVIKKD-Q 148
           PV P I ++         F  + + +++         P  +KP + GSS G+  ++++  
Sbjct: 158 PVAPGITLDARDCDAACAFAANGETMLAAVQAAGLRYPLFVKPSRAGSSFGVTKVEREGD 217

Query: 149 SIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP-----------KS 197
           +  L      + +H  ++L+EQ +D  E+ C V+   + D    + P             
Sbjct: 218 AAELAAAVFEASHHDWRVLVEQGIDAREIECAVLCPKAGDEPRASWPGEIVLDKRAGGDD 277

Query: 198 DFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256
            FY ++ KY    ++HV +PA +P +  + V+  A  A +A+   G+SR D  F     K
Sbjct: 278 QFYDFDSKYMDAEASHVEVPAALPQETLELVRETAKKAFKAVDGTGLSRVD-TFVTADGK 336

Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           V   EIN  PG TP+S++P+     G S+ +L+  ++E
Sbjct: 337 VMVNEINTMPGFTPISMYPKAWDATGVSYTDLISTLIE 374


>gi|75675248|ref|YP_317669.1| D-alanine--D-alanine ligase [Nitrobacter winogradskyi Nb-255]
 gi|74420118|gb|ABA04317.1| D-alanine--D-alanine ligase [Nitrobacter winogradskyi Nb-255]
          Length = 330

 Score =  125 bits (314), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 93/323 (28%), Positives = 150/323 (46%), Gaps = 44/323 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAG---FKVSQIDVDRSVGLVLAHLKP------ 51
           + +L GG + ER VS++S +A   AL +A    + +    VD     +  H +P      
Sbjct: 3   ITILFGGSNKERLVSVASAQALHHALPEADLWFWNLRDEIVDVRSETLRDHARPFEDEFV 62

Query: 52  --------DLAFNV-----------LHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
                   + A +            LHG   E+G +QA+ EL  IP+T SG  AS L+ D
Sbjct: 63  PGGSGAPLERALDRARAEDRVLVLGLHGGRAENGELQAMCELRRIPFTGSGSAASHLAFD 122

Query: 93  KMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP--PYVIKPLKGGSSLGIIVIKKDQSI 150
           K+ +K+ V+S GVP    +L+     D  H ++     V KP   GSS G+I +    + 
Sbjct: 123 KVAAKRFVASAGVPTPAHVLLE----DIDHALAEHGRLVAKPACDGSSYGLIFV----NA 174

Query: 151 PLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA----VPKSDFYSYELKY 206
           P D++        +  +IE +V G+E TCGV+  +   V  +     VP    + Y  KY
Sbjct: 175 PQDIVTVREAAKTEDYVIEPFVSGVEATCGVLEHSDGSVVALPPVEIVPAEGAFDYAAKY 234

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
            +  +  + P +   +I  ++   +  AH+A+ CRG SR+DF+         +LE N  P
Sbjct: 235 LAKTTQEICPGRFSPEIAAQIMDHSLRAHRALSCRGYSRTDFIV--TGNGPIYLETNTLP 292

Query: 267 GMTPVSIFPEMAAYAGYSFRELL 289
           G+T  S++P+     G  F + L
Sbjct: 293 GLTAASLYPKALHAQGVGFADFL 315


>gi|326773651|ref|ZP_08232934.1| D-alanine--D-alanine ligase [Actinomyces viscosus C505]
 gi|326636881|gb|EGE37784.1| D-alanine--D-alanine ligase [Actinomyces viscosus C505]
          Length = 378

 Score =  125 bits (314), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 78/262 (29%), Positives = 133/262 (50%), Gaps = 22/262 (8%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+   +LHG +GEDG +Q +LE++ IPY   G+LASA  MDK  +K ++ + G+   P +
Sbjct: 109 DVVLPLLHGPYGEDGTIQGMLEMMGIPYVGCGVLASAAGMDKQVTKVLLGAAGIATAPHV 168

Query: 112 LV--NRFTMDSQHLISP------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
           +V  + +  D + ++        P  +KP + GSSLGI  + + + +   +  + + +  
Sbjct: 169 VVGPHAWKRDPEAILEACRSLTYPLFVKPARAGSSLGISKVDRPEDLAGAIEAARAVDP- 227

Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVP----------KSDFYSYELKYSSLNS-T 212
            ++L+E  + G E+   V+     D   +A P            +FY YE KY + ++  
Sbjct: 228 -KVLVESGIVGREVEVAVLQGRGDDAPRVAEPGEIAMDASQGAGEFYDYETKYLAHDAVA 286

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
            V PA+I  +    +   A  A +A+GC G++R DF        V   EIN  PG TP S
Sbjct: 287 MVCPARIGPEARDLLMDTAARAFEALGCEGLARVDFFLTDAGEAVVN-EINTMPGFTPFS 345

Query: 273 IFPEMAAYAGYSFRELLLWMVE 294
           ++P M   +G  + EL+  ++E
Sbjct: 346 MYPYMWQVSGLGYTELVSELIE 367


>gi|300783664|ref|YP_003763955.1| D-alanine-D-alanine ligase [Amycolatopsis mediterranei U32]
 gi|299793178|gb|ADJ43553.1| D-alanine-D-alanine ligase [Amycolatopsis mediterranei U32]
          Length = 364

 Score =  125 bits (314), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 86/258 (33%), Positives = 137/258 (53%), Gaps = 17/258 (6%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+ F VLHG FGEDG +Q +LEL  IPY   G+LASA +MDK  +K+++++ G+PV    
Sbjct: 103 DVVFPVLHGAFGEDGTIQGLLELAGIPYVGPGVLASAAAMDKETAKKLLAAEGLPVGTFS 162

Query: 112 LVNR----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL 167
            + R         +  +  P  +KP + GSS+GI  +       LD   + +     ++L
Sbjct: 163 ALKRGQSTLEQTDREKLGLPVFVKPSRAGSSVGISRVADWAG--LDAAIALARATDPKVL 220

Query: 168 IEQYVDGIELTCGVMG------DASLDVTEIAVPKSD---FYSYELKYSSLNSTHVLPAK 218
           +E  V G E+ CGV+       +ASL   EI V   D   +Y +E KY   ++   +PAK
Sbjct: 221 VEAAVVGREVECGVLEFPDGHVEASLPA-EIRVLSEDENAWYDFETKYLGDDAELDIPAK 279

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278
           +   + ++++ +A  A +A+ C+G++R DF F     ++   E+N  PG T  S +P+M 
Sbjct: 280 LDDALTEKLRAMAVEAFRALDCQGLARVDF-FVTEDHQLIINEVNTMPGFTTKSAYPKMW 338

Query: 279 AYAGYSFRELLLWMVEDA 296
              G  +  LL  +VE A
Sbjct: 339 EVTGMDYPTLLTTLVETA 356


>gi|228989412|ref|ZP_04149401.1| D-alanine--D-alanine ligase [Bacillus pseudomycoides DSM 12442]
 gi|228995607|ref|ZP_04155273.1| D-alanine--D-alanine ligase [Bacillus mycoides Rock3-17]
 gi|229003234|ref|ZP_04161072.1| D-alanine--D-alanine ligase [Bacillus mycoides Rock1-4]
 gi|228758017|gb|EEM07224.1| D-alanine--D-alanine ligase [Bacillus mycoides Rock1-4]
 gi|228764179|gb|EEM13060.1| D-alanine--D-alanine ligase [Bacillus mycoides Rock3-17]
 gi|228770359|gb|EEM18934.1| D-alanine--D-alanine ligase [Bacillus pseudomycoides DSM 12442]
          Length = 364

 Score =  125 bits (314), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 92/324 (28%), Positives = 154/324 (47%), Gaps = 52/324 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------DRSVGLVLA---- 47
           + +L GG S+E +VSL +  A   AL    F++  I +         +R  G V +    
Sbjct: 9   LGLLYGGKSAEHQVSLQTALAAIKALNQEKFEIHPIYITEQGQWMRGERIEGEVTSVQAL 68

Query: 48  -------HLKP------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
                   + P                  D+ F +LHG  GEDG VQ +LEL+ IPY  +
Sbjct: 69  QMNGEENAISPVSLSTEIIPSSSKQEEAIDVIFPLLHGPNGEDGTVQGLLELMNIPYVGN 128

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPL 133
           G+LASA  MDK+  K + +  G+         R   +          + ++  P  +KP 
Sbjct: 129 GVLASAAGMDKVVMKNIFAEAGLKQAKYASFIRSVWEKNCQAAYEKVEEVLGYPCFVKPA 188

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
             GSS+GI   K  + +     ++  ++   ++++E+ + G E+  GV+G+     + I 
Sbjct: 189 NLGSSVGINKCKDREELEKAFEEAFQFDR--KIIVEENIVGREVEVGVLGNDEPKCSVIG 246

Query: 194 --VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
             VPK +FY Y+ KY   ++  ++PA++  +  K +QR A  A Q++   G++R+DF F 
Sbjct: 247 EIVPKKEFYDYKSKYIDGDTALIIPAEVTEEESKAIQRDAIRAFQSLDGAGLTRADF-FL 305

Query: 252 PLSRKVFWLEINVQPGMTPVSIFP 275
               +V+  E+N  PG TP S+FP
Sbjct: 306 TKDGEVYINEVNTMPGFTPFSMFP 329


>gi|229463100|gb|ACQ66099.1| D-alanine:D-alanine ligase [Enterococcus faecium]
          Length = 358

 Score =  125 bits (314), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 78/254 (30%), Positives = 139/254 (54%), Gaps = 16/254 (6%)

Query: 53  LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--S 110
           + F VLHG  GEDG +Q  LE L +PY  +G+L SA +MDK+ +K ++ + GVP  P   
Sbjct: 92  IVFPVLHGPNGEDGTIQGFLETLNMPYVGAGVLTSACAMDKIMTKYILQAAGVPQVPYVP 151

Query: 111 ILVNRFTMDSQHLI-----SPPYV--IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
           +L N++  + + +      S  Y+  +KP   GSS+GI   +  + +   L  ++++ + 
Sbjct: 152 VLKNQWKENPKKVFDQCEGSLLYLMFVKPANMGSSVGITKAENREELQNAL--ATAYQYD 209

Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
            + ++EQ ++  E+   V+G+  +  T   E+ V    FY YE KY +      +PA++P
Sbjct: 210 SRAIVEQGIEAREIEVAVLGNEDVRTTLPGEV-VKDVAFYDYEAKYINNKIEMQIPAEVP 268

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280
            ++Y++ Q  A LA+  +G  G+SR DF F     ++F  E+N  PG T  S++P +   
Sbjct: 269 EEVYQKAQEYAKLAYTMLGGSGLSRCDF-FLTNKNELFLNELNSMPGFTEFSMYPLLWEN 327

Query: 281 AGYSFRELLLWMVE 294
            G  + +L+  +++
Sbjct: 328 MGLKYGDLIEELIQ 341


>gi|40713144|emb|CAE53344.1| VanA protein [Actinoplanes teichomyceticus]
          Length = 345

 Score =  125 bits (314), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 95/324 (29%), Positives = 153/324 (47%), Gaps = 45/324 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------------------- 38
           + ++ GG+S E  VS+ S +  A +L+   ++   I +                      
Sbjct: 6   IGIIFGGVSEEHPVSIKSAQEVAKSLDAEKYEPYWIGITKDGAWRLCDGPGADWEISSAR 65

Query: 39  ------DRSV-GLVLAH------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
                 DR+V GL++        ++ D+   VLHG  GEDG +Q + EL  IPY    + 
Sbjct: 66  PAMLSPDRNVHGLLVQEDGRYREIRLDVVLPVLHGKLGEDGAMQGLFELSGIPYVGCDVQ 125

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145
           +SA+ MDK  +  VVSS G+      +V          ++ P  +KP + GSS G+  + 
Sbjct: 126 SSAVCMDKSLTYAVVSSAGIATPRFWVVTPDEAPDPAQLTYPVFVKPARSGSSFGVTKVS 185

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD----ASLDVTEIAVPKSDFYS 201
            +Q +   L  +  ++   ++LIE+ V G E+ C +MG+     + +V  +A+    F  
Sbjct: 186 TEQELKAALETAREFDS--KVLIEEAVVGSEIGCAIMGNDPDLVAGEVDRVALSHGFFRI 243

Query: 202 Y---ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
           +   E +  S NST + PA IP +    VQ  A   ++A+GCRGI+R D +F      V 
Sbjct: 244 HQESEPERGSENSTFICPADIPAEARSLVQETAKAIYRALGCRGIARVD-MFLKEDGTVV 302

Query: 259 WLEINVQPGMTPVSIFPEMAAYAG 282
             E+N  PG+T  S +P M A AG
Sbjct: 303 LNEVNTLPGLTSYSRYPRMMAAAG 326


>gi|323352703|ref|ZP_08087673.1| D-alanine-D-alanine ligase [Streptococcus sanguinis VMC66]
 gi|322121739|gb|EFX93485.1| D-alanine-D-alanine ligase [Streptococcus sanguinis VMC66]
          Length = 353

 Score =  125 bits (314), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 100/340 (29%), Positives = 165/340 (48%), Gaps = 46/340 (13%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH-------------- 48
           +L GG S+EREVS+ S ++   A+    F V    + +    +                 
Sbjct: 13  LLYGGRSAEREVSVLSAESVMRAVNYDRFSVKTYFITKDGDFIQTQEFEAKPAADEKLMT 72

Query: 49  ---------LKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
                    +KP        + F VLHG  GEDG +Q  LE+L++PY    IL+S+L+MD
Sbjct: 73  NATVDMSQKIKPSDIYEDGTVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNILSSSLAMD 132

Query: 93  KMRSKQVVSSCGVPVCPSI-LVNRFTMDS-----QHLISPPYVIKPLKGGSSLGIIVIKK 146
           K+ +K+V+ S G+   P + LV+   ++      +  ++ P   KP   GSS+GI   K 
Sbjct: 133 KITTKRVLESAGIAQVPYVALVDGEDLEQKIQEIEEKLTYPVFTKPSNMGSSVGI--SKS 190

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYE 203
           +    L      ++ +  ++L+EQ V   E+  G++G+  +  T   E+ V    FY YE
Sbjct: 191 ENQAELRASLDLAFKYDSRVLVEQGVTAREIEVGLLGNVDVKSTLPGEV-VKDVAFYDYE 249

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            KY     T  +PAKIP ++   +++ A  A +A+G  G+SR DF +     +VF  E+N
Sbjct: 250 AKYIDNKITMDIPAKIPDEVVSLMRQNAEAAFRALGGLGLSRCDFFYAE-DGQVFLNELN 308

Query: 264 VQPGMTPVSIFPEMAAYAGYSFREL---LLWMVEDASCLR 300
             PG T  S++P +    G ++ +L   L+ + E+A   R
Sbjct: 309 TMPGFTQWSMYPLLWENMGLAYPDLIEKLVGLAEEAFAKR 348


>gi|24379077|ref|NP_721032.1| D-alanyl-alanine synthetase A [Streptococcus mutans UA159]
 gi|26006956|sp|P95803|DDL_STRMU RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|24376976|gb|AAN58338.1|AE014904_1 putative D-alanine-D-alanine ligase [Streptococcus mutans UA159]
          Length = 349

 Score =  125 bits (313), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 102/334 (30%), Positives = 164/334 (49%), Gaps = 46/334 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKV---------------------SQIDVD 39
           + +L GG S+ER+VS+ S ++   A+    F V                     S+ D  
Sbjct: 6   LVLLYGGRSAERDVSVLSAESVMRAINYDNFLVKTYFITQAGDFIKTQEFDSQPSETDKL 65

Query: 40  RSVGLVLA--HLKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
            +   ++A   +KP        + F VLHG  GEDG +Q  LE+L++PY  + IL+S+++
Sbjct: 66  MTNDTIIASQKIKPSDIYEEEAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGTNILSSSVA 125

Query: 91  MDKMRSKQVV-SSCGVPVCPSI-------LVNRFTMDSQHLISPPYVIKPLKGGSSLGII 142
           MDK+ + QV+ S+  +P    +       L ++     + LI P +V KP   GSS+GI 
Sbjct: 126 MDKITTNQVLESATTIPQVAYVALIEGEPLESKLAEVEEKLIYPVFV-KPANMGSSVGI- 183

Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDF 199
             K +    L    + +  +  ++LIEQ VD  E+  G++G+  +  T   EI V    F
Sbjct: 184 -SKAENRTDLKQAIALALKYDSRVLIEQGVDAREIEVGILGNTDVKTTLPGEI-VKDVAF 241

Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
           Y YE KY     T  +PA+I   I ++++  A  A + +GC G+SR DF       KV+ 
Sbjct: 242 YDYEAKYIDNKITMAIPAEIDPVIVEKMRDYAATAFRTLGCCGLSRCDFFLTE-DGKVYL 300

Query: 260 LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            E+N  PG T  S++P +    G S+  L+  +V
Sbjct: 301 NELNTMPGFTQWSMYPLLWENMGLSYSVLIEELV 334


>gi|77412467|ref|ZP_00788770.1| D-alanine--D-alanine ligase [Streptococcus agalactiae CJB111]
 gi|77161485|gb|EAO72493.1| D-alanine--D-alanine ligase [Streptococcus agalactiae CJB111]
          Length = 348

 Score =  125 bits (313), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 101/336 (30%), Positives = 162/336 (48%), Gaps = 51/336 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQ------------------------- 35
           + +L GG S+EREVS+ S ++   A+    F V                           
Sbjct: 6   LILLYGGRSAEREVSVLSAESVMRAINYDKFFVKTYFITQVGQFIKTQEFDEMPSSDEKL 65

Query: 36  -----IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
                +D+D+ V     +    + F VLHG  GEDG +Q  LE+L +PY  + IL+S+++
Sbjct: 66  MTNQTVDLDKMVRPSDIYDDNAIVFPVLHGPMGEDGSIQGFLEVLRMPYVGTNILSSSVA 125

Query: 91  MDKMRSKQVVSSCGVPVCPSILVNRFTMDS-QHLI-------SPPYVIKPLKGGSSLGII 142
           MDK+ +KQV+++ GVP         F  D  +H I       S P  +KP   GSS+GI 
Sbjct: 126 MDKITTKQVLATVGVPQVA--YQTYFEGDDLEHAIKLSLETLSFPIFVKPANMGSSVGIS 183

Query: 143 VIKKDQSI--PLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKS 197
               + S+   +DL    +  +  ++LIEQ V   E+  G++G+  +  T   E+ V   
Sbjct: 184 KATDESSLRSAIDL----ALKYDSRILIEQGVTAREIEVGILGNNDVKTTFPGEV-VKDV 238

Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
           DFY Y+ KY        +PAK+     + +++ A  A +AIG  G+SR DF F     ++
Sbjct: 239 DFYDYDAKYIDNKIIMDIPAKVDEATMEAMRQYASKAFKAIGACGLSRCDF-FLTKDGQI 297

Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           F  E+N  PG T  S++P +    G ++ +L+  +V
Sbjct: 298 FLNELNTMPGFTQWSMYPLLWENMGLTYSDLIEKLV 333


>gi|323490561|ref|ZP_08095767.1| D-alanine--D-alanine ligase B [Planococcus donghaensis MPA1U2]
 gi|323395827|gb|EGA88667.1| D-alanine--D-alanine ligase B [Planococcus donghaensis MPA1U2]
          Length = 356

 Score =  125 bits (313), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 98/334 (29%), Positives = 155/334 (46%), Gaps = 49/334 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR------------------SV 42
           + +L GG S+E EVSLS+  A   A++   ++V  I + +                   +
Sbjct: 5   IGLLYGGKSAEHEVSLSTALAVTKAIDFNAYEVYPIYITQDGEWRKGQSLEEPATTIEQL 64

Query: 43  GLVLAHLKP---------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87
            L     KP               D+   +LHG  GEDG VQ +LE+L IPY  +G+LAS
Sbjct: 65  QLTEGTGKPNDISSFLPTQTSEALDVIVPLLHGPNGEDGTVQGLLEVLNIPYVGNGVLAS 124

Query: 88  ALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH----------LISPPYVIKPLKGGS 137
           +  MDK+  KQ+    G+   P +   R   D+            L+ P +V KP   GS
Sbjct: 125 SAGMDKVVMKQLFKQAGLEQTPYVYFIRRDWDNNQGFWLDKIEAELVWPVFV-KPANLGS 183

Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG--DASLDVTEIAVP 195
           S+GI   K D    L +    +     +++IEQ V   E+  GV+G  + +  V     P
Sbjct: 184 SVGI--SKADNREELIVAVKEALKFDRKIVIEQGVVAREIEVGVLGNDEPACSVAGEIKP 241

Query: 196 KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255
              FY Y+ KY   N+  ++PA++   +Y ++   A  A + + C G+ R+DF F   + 
Sbjct: 242 LKAFYDYQAKYKDGNTAMIIPAELDEAVYAKLVVDAKKAFKILDCSGLVRADF-FVTANN 300

Query: 256 KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           ++   E+N  PG TP S+FP +  + G  + EL+
Sbjct: 301 EILINEVNTLPGFTPFSMFPLLWEHTGVPYPELI 334


>gi|304440570|ref|ZP_07400456.1| D-alanine-D-alanine ligase [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304370946|gb|EFM24566.1| D-alanine-D-alanine ligase [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 395

 Score =  125 bits (313), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 90/260 (34%), Positives = 133/260 (51%), Gaps = 27/260 (10%)

Query: 50  KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109
           K D  F  LHG FGEDG VQ IL+ + IPYT   + A+A+ MDK+  K V  S  +P+  
Sbjct: 108 KIDAVFVALHGTFGEDGAVQGILQFIGIPYTGCAVNAAAVGMDKVIMKDVFKSQNIPMTD 167

Query: 110 SILVNR--FTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
                R  +  D        I  P  +KP   GSS+GI   K +  +  D ++  + ++ 
Sbjct: 168 YFYFYRDFYKFDIVKAEAEKIGYPVFVKPANLGSSVGISKAKNEAELK-DAVE-VAMHYD 225

Query: 164 DQLLIEQYVDG-IELTCGVMG---DASLDVTEIAVPKSDFYSYELKYSS----------L 209
            ++++E+ V+   E+ C V+G   D    +TE  +   DF +Y+ KY S           
Sbjct: 226 RKIIVEKSVEKPREINCAVLGYEDDLQASLTEEPITWEDFLTYDDKYKSGGKGSKSVGMK 285

Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
           N    LPA IP ++ +EV+RLA LA ++I   G++R DFL D  + KV+  EIN  PG  
Sbjct: 286 NQKKNLPANIPDEMTEEVKRLAKLAFRSIDAMGVARIDFLVDE-NEKVYVNEINTLPGSI 344

Query: 270 PVSIFPEMAAYAGYSFRELL 289
              +F  M    G SF+EL+
Sbjct: 345 AFYLFEPM----GISFKELI 360


>gi|288800658|ref|ZP_06406115.1| D-alanine--D-alanine ligase [Prevotella sp. oral taxon 299 str.
           F0039]
 gi|288332119|gb|EFC70600.1| D-alanine--D-alanine ligase [Prevotella sp. oral taxon 299 str.
           F0039]
          Length = 332

 Score =  125 bits (313), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 95/330 (28%), Positives = 155/330 (46%), Gaps = 43/330 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKV-----------------SQIDVDR--- 40
           +A++ GG SSE EVSL S +   S  +   + V                  Q+ +D+   
Sbjct: 7   IAIVCGGYSSEHEVSLRSAQGIYSFFDKERYNVYIVEISKESWWVNVEENQQLPIDKNNF 66

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           S  L    +  D A+  +HG  GE+GL+Q   +++++PY+ SG+L  A++ +K      +
Sbjct: 67  SFELNGNKVVFDYAYITIHGTPGENGLLQGYFDMIQLPYSTSGVLVEAMTFNKFVLNNYL 126

Query: 101 SSCGVPVCPSILVNRFTMDSQHLISP---------PYVIKPLKGGSSLGIIVIKKDQSIP 151
              G  V  S++V +   D  H IS          P  IKP   GSS G+  +K    IP
Sbjct: 127 RGFGYNVAKSMVVYK---DEAHKISAEKIESELGMPCFIKPAADGSSFGVSKVKSKSDIP 183

Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYS 207
             L    ++N  ++++IE ++ G E++ G      G  SL  TE+ V +++F+ Y  KY+
Sbjct: 184 AAL--ELAFNESNEVMIESFLQGTEISIGCYATKEGLVSLPATEV-VTENEFFDYNAKYN 240

Query: 208 SLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF--DPLSRKVF-WLEINV 264
                 + PA++  D  + V       +  + C GI R D++   D   + V   LEIN 
Sbjct: 241 G-QVQEITPARLHPDTAERVANEVKEIYSLLRCNGIIRIDYIISKDSNGKDVLNLLEINT 299

Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            PGMT  S  P+    AG +  ++L  +VE
Sbjct: 300 TPGMTATSFIPQQVRAAGLNMTDVLTNIVE 329


>gi|160937585|ref|ZP_02084946.1| hypothetical protein CLOBOL_02476 [Clostridium bolteae ATCC
           BAA-613]
 gi|158439654|gb|EDP17404.1| hypothetical protein CLOBOL_02476 [Clostridium bolteae ATCC
           BAA-613]
          Length = 372

 Score =  125 bits (313), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 82/240 (34%), Positives = 123/240 (51%), Gaps = 15/240 (6%)

Query: 48  HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV 107
            ++ D+ F VLHG +GEDG +Q +LEL +IPY   G+L+SA+SMDK+ +K +V   GV  
Sbjct: 110 EVRVDVVFPVLHGLYGEDGTIQGLLELAKIPYVGCGVLSSAVSMDKLYTKIIVDDLGVRQ 169

Query: 108 CPSILVNR---FTMDS-----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
                V R     M+S     +   S P  IKP   GSS G  V K D    L+   S +
Sbjct: 170 AAYEAVYREQLVHMESVVERVEKHFSYPVFIKPSNAGSSRG--VTKADDRQALEAGLSEA 227

Query: 160 WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK----SDFYSYELKYSSLNSTHVL 215
             H  ++L+E+ + G E+ C V G    +V    V +    ++FY +E KY +  S  V 
Sbjct: 228 ARHDRKILVEETIIGREIECAVFGGGLKEVVASGVGEILAAAEFYDFEAKYYNEESRTVT 287

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275
             ++P    + V++ A    +A+   G++R DF        VF  EIN  PG T +S++P
Sbjct: 288 DPELPAGAAERVRQAAMDIFRAVDGYGLARVDFFVKDDGEVVF-NEINTMPGFTAISMYP 346


>gi|325697104|gb|EGD38991.1| D-alanine-D-alanine ligase [Streptococcus sanguinis SK160]
 gi|327473367|gb|EGF18787.1| D-alanine-D-alanine ligase [Streptococcus sanguinis SK408]
          Length = 353

 Score =  125 bits (313), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 100/340 (29%), Positives = 164/340 (48%), Gaps = 46/340 (13%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH-------------- 48
           +L GG S+EREVS+ S ++   A+    F V    + +    +                 
Sbjct: 13  LLYGGRSAEREVSVLSAESVMRAVNYDRFSVKTYFITKDGDFIQTQEFEAKPAADEKLMT 72

Query: 49  ---------LKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
                    +KP        + F VLHG  GEDG +Q  LE+L++PY    IL+S L+MD
Sbjct: 73  NATVDISQKIKPSDIYEDGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNILSSGLAMD 132

Query: 93  KMRSKQVVSSCGVPVCPSI-LVNRFTMDS-----QHLISPPYVIKPLKGGSSLGIIVIKK 146
           K+ +K+V+ S G+   P + LV+   ++      +  ++ P   KP   GSS+GI   K 
Sbjct: 133 KITTKRVLESAGIAQVPYVALVDGENLEQKIQEIEEKLTYPVFTKPSNMGSSVGI--SKS 190

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYE 203
           +    L      ++ +  ++L+EQ V   E+  G++G+  +  T   E+ V    FY YE
Sbjct: 191 ENQAELRASLDLAFKYDSRVLVEQGVTAREIEVGLLGNVDVKSTLPGEV-VKDVAFYDYE 249

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            KY     T  +PAKIP ++   +++ A  A +A+G  G+SR DF +     +VF  E+N
Sbjct: 250 AKYIDNKITMDIPAKIPDEVVSLMRQNAEAAFRALGGLGLSRCDFFYVE-DGQVFLNELN 308

Query: 264 VQPGMTPVSIFPEMAAYAGYSFREL---LLWMVEDASCLR 300
             PG T  S++P +    G ++ +L   L+ + E+A   R
Sbjct: 309 TMPGFTQWSMYPLLWENMGLAYPDLIEKLVGLAEEAFAKR 348


>gi|323695828|gb|ADX99534.1| D-alanine D-alanine ligase [Streptomyces sp. MJM7001]
          Length = 316

 Score =  125 bits (313), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 91/295 (30%), Positives = 140/295 (47%), Gaps = 15/295 (5%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62
           V+ GG+S EREVS  SG   A AL  AG      DV   +   LA  +  + F VLHG  
Sbjct: 8   VIAGGLSPEREVSQKSGARVADALRRAGVGTELRDVGPDLLPALADAQGAVVFPVLHGVA 67

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR------- 115
           GEDG ++ ILEL  +PY  +   A   + DK  +K+     G+    S+ + +       
Sbjct: 68  GEDGTIKEILELAGVPYVGARPGACRAAFDKAVAKETFVRAGLSTPASVTLPKEAFHDLG 127

Query: 116 ---FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
               T      +  P  +KP  GGS+ G+  +++ + +P  L+   +++  D+ LIE+ V
Sbjct: 128 AAALTARITERLGLPLFVKPRAGGSAFGVSRVERAEQLPEALMACFAYH--DEALIERLV 185

Query: 173 DGIELTCGV--MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            G E+  GV  +G+    +  + +     Y Y  +Y+        PA+I     +E  R+
Sbjct: 186 TGTEIAVGVADLGEGPFALPAVEIAAEGLYDYTARYTPGAVEFHHPARISPAAAEEAARV 245

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285
           A  AH+ +G R +SR+D +      +V  LE NV PGMT  S +P     AG  F
Sbjct: 246 AVAAHRTLGLRDLSRTDAIVT-TEGEVVVLETNVAPGMTLTSTYPMALEAAGLGF 299


>gi|255015879|ref|ZP_05288005.1| D-alanyl-alanine synthetase A [Bacteroides sp. 2_1_7]
          Length = 330

 Score =  125 bits (313), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 86/325 (26%), Positives = 159/325 (48%), Gaps = 37/325 (11%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFK----------------------VSQIDV 38
           +A++ GG SSE  +SL S     S ++   +                       + + D 
Sbjct: 5   IAIVAGGDSSEIVISLKSADGIYSFIDKDKYNLYIAIVKRDEWAVILPSGEHTPIDKNDF 64

Query: 39  DRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQ 98
                 V  H   D A+  +HG  GEDG +Q   +++ +PY+  G+L SAL+ +K     
Sbjct: 65  SFKENGVTRHF--DFAYITIHGTPGEDGRLQGYFDMIGMPYSSCGMLVSALTFNKYVCNH 122

Query: 99  VVSSCGVPVCPSI-LVNRFTMDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDL 154
            +   GV +  SI L    T+  + +++    P  +KP  GGSS G+  +K+  +I   +
Sbjct: 123 YLKDFGVKIAASIHLFKGETITDEEVVTRLGLPIFVKPNDGGSSFGVTKVKEVSAIQPAI 182

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCG---VMG-DASLDVTEIAVPKSDFYSYELKYSSLN 210
             + ++  G ++++E+++DG E+TCG   V G +    +TE+ V  ++F+ ++ KY+   
Sbjct: 183 --AKAFGEGREVILERFIDGTEVTCGCYKVEGKEVVFPLTEV-VTNNEFFDFDAKYNG-Q 238

Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270
              + PA+I  ++ + +QR     +  +G +G+ R D++  P   +   LEIN  PGMT 
Sbjct: 239 VDEITPARISTELTELIQRETSRIYDILGAKGLIRVDYII-PADGEPVLLEINTTPGMTA 297

Query: 271 VSIFPEMAAYAGYSFRELLLWMVED 295
            S  P+    AG   ++++  ++ED
Sbjct: 298 TSFIPQQVRAAGLDIKDVMTDIIED 322


>gi|116671060|ref|YP_831993.1| D-alanyl-alanine synthetase A [Arthrobacter sp. FB24]
 gi|190359110|sp|A0JXX3|DDL_ARTS2 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|116611169|gb|ABK03893.1| D-alanine--D-alanine ligase [Arthrobacter sp. FB24]
          Length = 382

 Score =  125 bits (313), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 88/259 (33%), Positives = 132/259 (50%), Gaps = 28/259 (10%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+ F +LHG FGEDG +Q +LEL +  Y  +G+LASA+ MDK   K V  + G+ V P I
Sbjct: 116 DVVFPLLHGPFGEDGTIQGLLELSDTRYVGAGVLASAVGMDKHYMKVVFEAAGLQVGPYI 175

Query: 112 LVNRFTMDSQHLISP------------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
            V     D Q L  P            P  +KP + GSS+GI   K D    LD   +++
Sbjct: 176 AVT----DRQWLTDPEAIRKRVDRLGYPVFVKPARAGSSMGI--SKVDSLEGLDAAIAAA 229

Query: 160 WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP--------KSDFYSYELKYSSLNS 211
             H  +L+IE  + G E+ C V+     +    ++P        + +FY +  KY   ++
Sbjct: 230 REHDLKLVIEAGIVGREIECAVLEGRGTEPPRTSMPGEIAVAPGEHEFYDFNAKYVEDDA 289

Query: 212 THV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270
             +  PA +P +    V+ LA  A  A+G  G+SR DF + P   ++   EIN  PG TP
Sbjct: 290 ASLSCPADLPDEAIARVRELAAAAFDAVGAEGLSRVDFFYTP-DGELIINEINTMPGFTP 348

Query: 271 VSIFPEMAAYAGYSFRELL 289
            S++P+M A +G  + EL+
Sbjct: 349 KSMYPQMWAASGLGYAELI 367


>gi|228477325|ref|ZP_04061963.1| D-alanine--D-alanine ligase [Streptococcus salivarius SK126]
 gi|228251344|gb|EEK10515.1| D-alanine--D-alanine ligase [Streptococcus salivarius SK126]
          Length = 348

 Score =  125 bits (313), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 89/329 (27%), Positives = 160/329 (48%), Gaps = 41/329 (12%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH-------------- 48
           +L GG S+EREVS+ S ++   A++ + F+V    + +S   +                 
Sbjct: 8   LLYGGRSAEREVSVLSAESVMRAVDYSAFEVKTYFITQSGDFIKTQEFTETPGDDEKLMT 67

Query: 49  ---------LKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
                    +KP        + F VLHG  GEDG +Q  LE L++PY  + +L+S+++MD
Sbjct: 68  NDTVVASQAIKPSDIYEEGAVVFPVLHGPMGEDGSIQGFLETLKLPYVGTNVLSSSVAMD 127

Query: 93  KMRSKQVVSSCGVP-VCPSILVNRFTMDSQ-----HLISPPYVIKPLKGGSSLGIIVIKK 146
           K+ +K ++   GVP V  ++ +    +++        ++ P  +KP   GSS+GI   K 
Sbjct: 128 KIMTKHILEVAGVPQVAYTVFIEGEDLEAAVAETLEKLTFPVFVKPANMGSSVGI--SKA 185

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD--FYSYEL 204
           +    L      +  +  ++LIEQ V   E+  G++G+ ++  T+      D  FY Y+ 
Sbjct: 186 ENEAELRAAIDLALKYDSRILIEQGVVAREIEVGILGNTTVKTTDPGEVVKDVAFYDYQA 245

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           KY     T  +PA +P+++  +++  A  A +A+G  G++R DF        ++  E+N 
Sbjct: 246 KYIDNKITMDIPAHVPVEVMTQMRAYAAKAFRALGGCGLARCDFFLTE-DGAIYLNELNT 304

Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            PG T  S++P +    G S+  L+  +V
Sbjct: 305 MPGFTQWSMYPLLWENMGLSYSNLIKELV 333


>gi|322377428|ref|ZP_08051919.1| D-alanine--D-alanine ligase [Streptococcus sp. M334]
 gi|321281628|gb|EFX58637.1| D-alanine--D-alanine ligase [Streptococcus sp. M334]
          Length = 347

 Score =  125 bits (313), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 98/331 (29%), Positives = 159/331 (48%), Gaps = 43/331 (12%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKV----------------------------- 33
           +L GG S+EREVS+ S ++   A+    F V                             
Sbjct: 7   LLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDFIKTQEFSQTPGQEDRLMT 66

Query: 34  -SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
              I  D+ V     + +  + F VLHG  GEDG VQ  LE+L++PY    IL+S+L+MD
Sbjct: 67  NETIAWDKKVAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLAMD 126

Query: 93  KMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           K+ +K+V+ S G+   P +       V     + +  ++ P   KP   GSS+GI   K 
Sbjct: 127 KITTKRVLESVGIAQVPYVAIVEGDDVTAKIAEVEEKLTYPVFTKPSNMGSSVGI--SKS 184

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYE 203
           +    L      ++ +  ++L+EQ V+  E+  G++G+  +  T   E+ V    FY Y+
Sbjct: 185 ENQEELRQALKLAFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVAFYDYD 243

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            KY     T  +PAKI  D+   +++ A  A +AIG  G+SR DF +     ++F  E+N
Sbjct: 244 AKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDFFYTDKG-EIFLNELN 302

Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             PG T  S++P +    G S+ +L+  +V+
Sbjct: 303 TMPGFTQWSMYPLLWDNMGISYPDLIERLVD 333


>gi|256841838|ref|ZP_05547344.1| D-alanyl-alanine synthetase A [Parabacteroides sp. D13]
 gi|256736732|gb|EEU50060.1| D-alanyl-alanine synthetase A [Parabacteroides sp. D13]
          Length = 330

 Score =  125 bits (313), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 86/325 (26%), Positives = 159/325 (48%), Gaps = 37/325 (11%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFK----------------------VSQIDV 38
           +A++ GG SSE  +SL S     S ++   +                       + + D 
Sbjct: 5   IAIVAGGDSSEIVISLKSADGIYSFIDKDKYNLYIAIVKRDEWAVILPSGEHTPIDKNDF 64

Query: 39  DRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQ 98
                 V  H   D A+  +HG  GEDG +Q   +++ +PY+  G+L SAL+ +K     
Sbjct: 65  SFKENGVAKHF--DFAYITIHGTPGEDGRLQGYFDMIGMPYSSCGMLVSALTFNKYVCNH 122

Query: 99  VVSSCGVPVCPSI-LVNRFTMDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDL 154
            +   GV +  SI L    T+  + +++    P  +KP  GGSS G+  +K+  +I   +
Sbjct: 123 YLKDFGVKIAASIHLFKGETITDEEVVTRLGLPIFVKPNDGGSSFGVTKVKEVSAIQPAI 182

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCG---VMG-DASLDVTEIAVPKSDFYSYELKYSSLN 210
             + ++  G ++++E+++DG E+TCG   V G +    +TE+ V  ++F+ ++ KY+   
Sbjct: 183 --AKAFGEGREVILERFIDGTEVTCGCYKVEGKEVVFPLTEV-VTNNEFFDFDAKYNG-Q 238

Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270
              + PA+I  ++ + +QR     +  +G +G+ R D++  P   +   LEIN  PGMT 
Sbjct: 239 VDEITPARISTELTELIQRETSRIYDILGAKGLIRVDYII-PADGEPVLLEINTTPGMTA 297

Query: 271 VSIFPEMAAYAGYSFRELLLWMVED 295
            S  P+    AG   ++++  ++ED
Sbjct: 298 TSFIPQQVRAAGLDIKDVMTDIIED 322


>gi|325963740|ref|YP_004241646.1| D-alanine--D-alanine ligase [Arthrobacter phenanthrenivorans Sphe3]
 gi|323469827|gb|ADX73512.1| D-alanine--D-alanine ligase [Arthrobacter phenanthrenivorans Sphe3]
          Length = 382

 Score =  125 bits (313), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 85/255 (33%), Positives = 129/255 (50%), Gaps = 20/255 (7%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+ F +LHG FGEDG +Q +LEL +  Y  +G+LASA+ MDK   K V  S G+ V P +
Sbjct: 116 DVVFPLLHGPFGEDGTIQGLLELSDTRYVGAGVLASAVGMDKHFMKVVFESAGLQVGPYV 175

Query: 112 LVN--RFTMDSQHL------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
            V   ++  D + +      +  P  +KP + GSS+GI   K +    LD     +  H 
Sbjct: 176 AVTDRQWRKDPESVRKQVDRLGFPVFVKPARAGSSMGI--SKVESMAELDAAIEEARRHD 233

Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKS--------DFYSYELKYSSLNSTHV- 214
            +L+IE  + G E+ C V+     D    ++P          +FY +  KY    +  + 
Sbjct: 234 LKLVIEAGITGREIECAVLEGRGTDAPRTSMPGEISVAGGTHEFYDFNAKYVEDGAAALS 293

Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274
            PA IP +    V+ LA  A  A+G  G+SR DF + P    +   EIN  PG TP S++
Sbjct: 294 CPADIPEEAIARVRELAAAAFDAVGAEGLSRVDFFYTPAGELII-NEINTMPGFTPKSMY 352

Query: 275 PEMAAYAGYSFRELL 289
           P+M A +G  + +L+
Sbjct: 353 PQMWAASGLDYADLI 367


>gi|227524299|ref|ZP_03954348.1| D-alanine--D-alanine ligase [Lactobacillus hilgardii ATCC 8290]
 gi|227088530|gb|EEI23842.1| D-alanine--D-alanine ligase [Lactobacillus hilgardii ATCC 8290]
          Length = 375

 Score =  125 bits (313), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 81/255 (31%), Positives = 142/255 (55%), Gaps = 15/255 (5%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC--- 108
           D+ F ++HGN GEDG +Q +L LL  PY  SG+L SA+S DK  +K+++   GV      
Sbjct: 97  DVFFPIIHGNLGEDGTIQGLLRLLNKPYVGSGVLGSAMSFDKDITKKILKLAGVATTRYE 156

Query: 109 --PSILVNRFTMDS-QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
               + V +++ DS    +     +KP   GSS+GI   K + S   D     ++ + ++
Sbjct: 157 LLTPLTVEKYSYDSLSAELGKILFVKPANQGSSVGI--HKVETSDDYDEAIRDAFRYDNK 214

Query: 166 LLIEQYVDG-IELTCGVMGDA---SLDVTEIAVPKSD-FYSYELKYSSLNSTHV-LPAKI 219
           +L+E+ ++G  EL   V+G+    +  V  I VP  D FY+Y+ K+   +     +P  I
Sbjct: 215 VLVEEAIEGPEELEISVLGNHHPIASKVGSIKVPADDAFYTYDNKFVDASQVKFDVPVDI 274

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279
              + KE+ ++A  +++A+G +G++R DFL    S   +  E+N  PG T +S++P++ A
Sbjct: 275 SEALSKELTKMALDSYRALGLKGMARIDFLVSQDSEP-YVSEVNTLPGFTNISLYPQLFA 333

Query: 280 YAGYSFRELLLWMVE 294
            +G S+REL+  +++
Sbjct: 334 ASGISYRELIDRLIQ 348


>gi|163938235|ref|YP_001643119.1| D-alanyl-alanine synthetase A [Bacillus weihenstephanensis KBAB4]
 gi|229009735|ref|ZP_04166958.1| D-alanine--D-alanine ligase [Bacillus mycoides DSM 2048]
 gi|229165216|ref|ZP_04293008.1| D-alanine--D-alanine ligase [Bacillus cereus AH621]
 gi|163860432|gb|ABY41491.1| D-alanine--D-alanine ligase [Bacillus weihenstephanensis KBAB4]
 gi|228618248|gb|EEK75281.1| D-alanine--D-alanine ligase [Bacillus cereus AH621]
 gi|228751530|gb|EEM01333.1| D-alanine--D-alanine ligase [Bacillus mycoides DSM 2048]
          Length = 362

 Score =  125 bits (313), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 78/249 (31%), Positives = 135/249 (54%), Gaps = 14/249 (5%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-- 109
           D+ F +LHG  GEDG VQ +LELL IPY  +G+LAS+  MDK+  K + +  G+      
Sbjct: 96  DVIFPLLHGPNGEDGTVQGLLELLNIPYVGNGVLASSAGMDKVVMKNIFAEAGLKQAKYA 155

Query: 110 SILVNRFTMDS-------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
           S + + +  D        + ++  P  +KP   GSS+GI   K +    L+     ++  
Sbjct: 156 SFIRSAWEKDRETAYEKVEEVLGYPCFVKPANLGSSVGI--NKCNDREELENAFEEAFQF 213

Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVTEIA--VPKSDFYSYELKYSSLNSTHVLPAKIP 220
             ++++E+ + G E+  GV+G+     + +   VPK DFY Y+ KY   ++  ++PA++ 
Sbjct: 214 DRKIIVEENIVGREVEVGVLGNDEPKCSVVGEIVPKKDFYDYKSKYIDGDTALIIPAEMT 273

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280
            +    ++R A +A Q++   G++R+DF F     +V+  E+N  PG TP S+FP +  +
Sbjct: 274 EEESNVIKRDAIIAFQSLDGSGLTRADF-FLTKDGEVYINEVNTMPGFTPFSMFPLLWQH 332

Query: 281 AGYSFRELL 289
            G  + EL+
Sbjct: 333 TGLPYPELI 341


>gi|33336050|gb|AAQ12893.1| truncated D-alanine:D-alanine ligase [Enterococcus faecium]
          Length = 330

 Score =  125 bits (313), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 75/234 (32%), Positives = 126/234 (53%), Gaps = 16/234 (6%)

Query: 53  LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--S 110
           + F VLHG  GEDG +Q  LE L +PY  +G+L SA +MDK+ +K ++ + GVP  P   
Sbjct: 92  IVFPVLHGPNGEDGTIQGFLETLNMPYVGAGVLTSACAMDKIMTKYILQAAGVPQVPYVP 151

Query: 111 ILVNRFTMDSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
           +L N++  + + +          P  +KP   GSS+GI   K +    L    ++++ + 
Sbjct: 152 VLKNQWKENPKKVFDQCEGSLLYPMFVKPANMGSSVGI--TKAENREELQNALATAYQYD 209

Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
            + ++EQ ++  E+   V+G+  +  T   E+ V    FY YE KY +      +PA++P
Sbjct: 210 SRAIVEQGIEAREIEVAVLGNEDVRTTLPGEV-VKDVAFYDYEAKYINNKIEMQIPAEVP 268

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274
            ++Y++ Q  A LA+  +G  G+SR DF F     ++F  E+N  PG T  S++
Sbjct: 269 EEVYQKAQEYAKLAYTMLGGSGLSRCDF-FLTNKNELFLNELNSMPGFTEFSMY 321


>gi|154486582|ref|ZP_02027989.1| hypothetical protein BIFADO_00399 [Bifidobacterium adolescentis
           L2-32]
 gi|154084445|gb|EDN83490.1| hypothetical protein BIFADO_00399 [Bifidobacterium adolescentis
           L2-32]
          Length = 378

 Score =  125 bits (313), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 78/272 (28%), Positives = 134/272 (49%), Gaps = 30/272 (11%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D  F VLHG +GEDG +Q + E++ +PY   G+LASA  MDK  +K ++++ G+PV P I
Sbjct: 104 DAVFPVLHGPYGEDGTIQGLFEMMGVPYVGCGVLASAACMDKHYTKVLLAAAGIPVAPGI 163

Query: 112 LVNRFTMD----------------SQHLISPPYVIKPLKGGSSLGIIVIKKD-QSIPLDL 154
            ++  + D                S+  +  P  +KP + GSS G+  ++ +  +  L  
Sbjct: 164 TLDARSFDKASEFKANADAIMAQVSEAGLQYPLFVKPSRAGSSFGVTKVEHEGDAAELAA 223

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP-----------KSDFYSYE 203
               + +H  ++L+EQ +D  E+ C V+   + +  + + P              FY ++
Sbjct: 224 AVYEASHHDWRILVEQGIDAREIECAVLCPKAGEAPQASWPGEIVLDKRAEGDDQFYDFD 283

Query: 204 LKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
            KY    ++HV +PA +P +    V+  A  A  A+   G+SR D  F     KV   EI
Sbjct: 284 SKYMDAAASHVEVPANLPEETLNLVRETAKKAFVAVDGAGLSRVD-TFVTKDGKVMVNEI 342

Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           N  PG T +S++P+     G  + +L+  ++E
Sbjct: 343 NTMPGFTSISMYPKAWEATGVRYTDLITMLIE 374


>gi|229055075|ref|ZP_04195506.1| D-alanine--D-alanine ligase [Bacillus cereus AH603]
 gi|228721259|gb|EEL72784.1| D-alanine--D-alanine ligase [Bacillus cereus AH603]
          Length = 362

 Score =  125 bits (313), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 78/249 (31%), Positives = 135/249 (54%), Gaps = 14/249 (5%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-- 109
           D+ F +LHG  GEDG VQ +LELL IPY  +G+LAS+  MDK+  K + +  G+      
Sbjct: 96  DVIFPLLHGPNGEDGTVQGLLELLNIPYVGNGVLASSAGMDKVVMKNIFAEAGLKQAKYA 155

Query: 110 SILVNRFTMDS-------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
           S + + +  D        + ++  P  +KP   GSS+GI   K +    L+     ++  
Sbjct: 156 SFIRSAWEKDRETAYEKVEEVLGYPCFVKPANLGSSVGI--NKCNDREELENAFEEAFQF 213

Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVTEIA--VPKSDFYSYELKYSSLNSTHVLPAKIP 220
             ++++E+ + G E+  GV+G+     + +   VPK DFY Y+ KY   ++  ++PA++ 
Sbjct: 214 DRKIIVEENIVGREVEVGVLGNDEPKCSVVGEIVPKKDFYDYKSKYIDGDTALIIPAEMT 273

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280
            +    ++R A +A Q++   G++R+DF F     +V+  E+N  PG TP S+FP +  +
Sbjct: 274 EEESNVIKRDAIIAFQSLDGSGLTRADF-FLTKDGEVYINEVNTMPGFTPFSMFPLLWQH 332

Query: 281 AGYSFRELL 289
            G  + EL+
Sbjct: 333 TGVPYPELI 341


>gi|229131239|ref|ZP_04260145.1| D-alanine--D-alanine ligase [Bacillus cereus BDRD-ST196]
 gi|228652230|gb|EEL08161.1| D-alanine--D-alanine ligase [Bacillus cereus BDRD-ST196]
          Length = 362

 Score =  125 bits (313), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 78/249 (31%), Positives = 135/249 (54%), Gaps = 14/249 (5%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-- 109
           D+ F +LHG  GEDG VQ +LELL IPY  +G+LAS+  MDK+  K + +  G+      
Sbjct: 96  DVIFPLLHGPNGEDGTVQGLLELLNIPYVGNGVLASSAGMDKVVMKNIFAEAGLKQAKYA 155

Query: 110 SILVNRFTMDS-------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
           S + + +  D        + ++  P  +KP   GSS+GI   K +    L+     ++  
Sbjct: 156 SFIRSAWEKDRETAYEKVEEVLGYPCFVKPANLGSSVGI--NKCNDREELENAFEEAFQF 213

Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVTEIA--VPKSDFYSYELKYSSLNSTHVLPAKIP 220
             ++++E+ + G E+  GV+G+     + +   VPK DFY Y+ KY   ++  ++PA++ 
Sbjct: 214 DRKIIVEENIIGREVEVGVLGNDEPKCSVVGEIVPKKDFYDYKSKYIDGDTALIIPAEMT 273

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280
            +    ++R A +A Q++   G++R+DF F     +V+  E+N  PG TP S+FP +  +
Sbjct: 274 EEESNVIKRDAIIAFQSLDGSGLTRADF-FLTKDGEVYINEVNTMPGFTPFSMFPLLWQH 332

Query: 281 AGYSFRELL 289
            G  + EL+
Sbjct: 333 TGLPYPELI 341


>gi|329766888|ref|ZP_08258416.1| hypothetical protein HMPREF0428_00113 [Gemella haemolysans M341]
 gi|328837613|gb|EGF87238.1| hypothetical protein HMPREF0428_00113 [Gemella haemolysans M341]
          Length = 355

 Score =  125 bits (313), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 87/332 (26%), Positives = 157/332 (47%), Gaps = 46/332 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKV--------------------------- 33
           + ++ GG S+E  +SL + K+  +A++   + V                           
Sbjct: 6   IGIIYGGKSAEHSISLLTAKSIINAIDKEKYNVFPIFISLEGNWARGEQITSEIADQHDL 65

Query: 34  --SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSM 91
             S  D D S  L     K D+ F VLHG  GEDG +Q +LE+++I Y  + +L+SA  M
Sbjct: 66  IFSNFDNDISGLLFEDGRKFDIVFPVLHGPNGEDGTIQGLLEIMDIAYVGNNVLSSAAGM 125

Query: 92  DKMRSKQVVSSCGVPVCPSILVNRFTMDSQ---------HLISPPYVIKPLKGGSSLGII 142
           DK+  KQ+ ++  +P  P +    +T  ++           +  P  +KP   GSS+GI 
Sbjct: 126 DKVVMKQLFAAYDLPQLPYVHFIEYTWKNKKDAIIAEINEKLKYPVFVKPANLGSSVGIS 185

Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQ-YVDGIELTCGVMGDASLDVTE----IAVPKS 197
               +  +   + ++  ++   ++++EQ  V   E+   V+G   +  T+    + +  +
Sbjct: 186 RCNDEAELVKGIEEALKFDK--KIVVEQGAVGAKEIEVAVLGYNEVKTTDPGEIVNISST 243

Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
           +FY YE KY+   S   +PA +   +Y + + +A  A +AI   G+ R+DF +     ++
Sbjct: 244 EFYDYETKYTDGQSRMDIPAPVDTTLYPKFREMAATAFRAISGSGLVRADFFYTK-EGEI 302

Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           F  E+N  PG TP S+FP + A    S+ E++
Sbjct: 303 FINEVNTMPGFTPFSMFPSLWANMNVSYSEII 334


>gi|320533338|ref|ZP_08034032.1| D-ala D-ala ligase [Actinomyces sp. oral taxon 171 str. F0337]
 gi|320134453|gb|EFW26707.1| D-ala D-ala ligase [Actinomyces sp. oral taxon 171 str. F0337]
          Length = 388

 Score =  125 bits (313), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 80/268 (29%), Positives = 135/268 (50%), Gaps = 26/268 (9%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+   +LHG +GEDG +Q +LE++ +PY   G+LASA  MDK  +K ++ + G+   P +
Sbjct: 119 DVVLPLLHGPYGEDGTIQGMLEMMGLPYVGCGVLASAAGMDKQVTKVLLGAAGIATAPHV 178

Query: 112 LVNRFT--------MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS--SSWN 161
           +V   T        +++   ++ P  +KP + GSSLGI  + +    P DL Q+  ++  
Sbjct: 179 VVGPHTWKRDPEAILEACRSLTYPLFVKPARAGSSLGISKVDR----PEDLRQAIEAARA 234

Query: 162 HGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP----------KSDFYSYELKYSSLNS 211
              ++L+E  + G E+   V+     D   +A P            +FY Y+ KY + ++
Sbjct: 235 VDPKVLVESGIVGREVEVAVLQGRDDDAPRVAEPGEIAMDASQGAGEFYDYDTKYLAHDA 294

Query: 212 -THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270
              V PA+I  +    +   A  A +A+GC G++R DF        V   EIN  PG TP
Sbjct: 295 VAMVCPARIGPEARALIMDTAARAFEAVGCEGLARVDFFLTDSGEAVVN-EINTMPGFTP 353

Query: 271 VSIFPEMAAYAGYSFRELLLWMVEDASC 298
            S++P M   +G  +  L+  ++E A+ 
Sbjct: 354 FSMYPYMWQVSGLDYTALVSELIELAAA 381


>gi|312198489|ref|YP_004018550.1| D-alanine--D-alanine ligase [Frankia sp. EuI1c]
 gi|311229825|gb|ADP82680.1| D-alanine--D-alanine ligase [Frankia sp. EuI1c]
          Length = 318

 Score =  125 bits (313), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 94/296 (31%), Positives = 145/296 (48%), Gaps = 16/296 (5%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62
           VL GG+S EREVSL SG+     L+  G  V   DVD S    L    P +   VLHG  
Sbjct: 9   VLAGGLSPEREVSLRSGRRLCDELDRIGVDVELRDVDGSTLPALDADPPAVVIPVLHGTS 68

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---FTMD 119
           GEDG ++ +L+L  +PY  +   A   + DK  +K  +S+ G+   P++ + R     + 
Sbjct: 69  GEDGTIREVLDLYGLPYVGATPAACRGAFDKATAKAALSAAGIATPPAVTLPREAFHDLG 128

Query: 120 SQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
           +  LI         P V+KP  GGS+ G+  ++    +   L+  + + + D  LIE+ V
Sbjct: 129 AAALIDRVVTRLGLPLVVKPRAGGSAFGVGRVEDAGQLAEALM--ACFGYHDCALIERAV 186

Query: 173 DGIELTCGVMGDASLDVTEIAV---PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
            G+E+  GV+      VT  AV   P +  Y Y  +Y+   +T  +PA++  D+ +    
Sbjct: 187 AGVEIAVGVVDTGDGPVTLPAVEIQPVTGVYDYAARYTPGATTFHIPARLDEDVLRAAAA 246

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285
            A  AH+ +  R +SR+D + D      F LE+NV PG+T  S +P     AG   
Sbjct: 247 AAVAAHRVLDLRDLSRTDLIIDADGVAQF-LEVNVAPGLTATSTWPMALKAAGLDL 301


>gi|55823487|ref|YP_141928.1| D-alanyl-alanine synthetase A [Streptococcus thermophilus CNRZ1066]
 gi|81559066|sp|Q5LYJ2|DDL_STRT1 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|55739472|gb|AAV63113.1| D-alanine-D-alanine ligase [Streptococcus thermophilus CNRZ1066]
          Length = 348

 Score =  125 bits (313), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 88/331 (26%), Positives = 165/331 (49%), Gaps = 45/331 (13%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH-------------- 48
           +L GG S+EREVS+ S ++   A++   F+V    + +S   +                 
Sbjct: 8   LLYGGRSAEREVSVLSAESVMRAVDYNAFEVKTYFITQSGDFIKTQEFIETPGDDEKLMT 67

Query: 49  ---------LKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
                    +KP        + F VLHG  GEDG +Q  LE L++PY  + +L+S+++MD
Sbjct: 68  NDTVEASQAIKPSDIYEEDAVVFPVLHGPMGEDGSIQGFLETLKLPYVGTNVLSSSVAMD 127

Query: 93  KMRSKQVVSSCGVP-VCPSILVNRFTMDSQ-----HLISPPYVIKPLKGGSSLGIIVIKK 146
           K+ +K+++   GVP V  ++ +    +++        ++ P  +KP   GSS+GI   + 
Sbjct: 128 KIMTKRILEVAGVPQVAYTVYIEGEDLEAAVAETLEKLTFPVFVKPANMGSSVGISKAEN 187

Query: 147 DQSI--PLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD--FYSY 202
           +  +   +DL    +  +  ++LIEQ V   E+  G++G+ ++  T+      D  FY Y
Sbjct: 188 ESELRSAIDL----ALKYDSRILIEQGVVAREIEVGILGNTTVKTTDPGEVVKDVAFYDY 243

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
           + KY     T  +PA++P+++  +++  A  A +A+G  G++R DF        ++  E+
Sbjct: 244 QAKYIDNKITMDIPARVPVEVMTQMRAYAAKAFRALGGCGLARCDFFLTE-DGAIYLNEL 302

Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           N  PG T  S++P +    G S+ +++  +V
Sbjct: 303 NTMPGFTQWSMYPLLWENMGLSYSDIIKELV 333


>gi|16077523|ref|NP_388337.1| D-alanyl-alanine synthetase A [Bacillus subtilis subsp. subtilis
           str. 168]
 gi|2829831|sp|P96612|DDL_BACSU RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|1881266|dbj|BAA19293.1| PROBABLE D-ALANINE--D-ALANINE LIGASE A [Bacillus subtilis]
 gi|2632756|emb|CAB12263.1| D-alanyl-D-alanine ligase A [Bacillus subtilis subsp. subtilis str.
           168]
          Length = 354

 Score =  125 bits (313), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 79/254 (31%), Positives = 133/254 (52%), Gaps = 14/254 (5%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-- 109
           D+ F +LHG  GEDG +Q +LELL IPY  +G+LAS+  MDK+  K + +  G+      
Sbjct: 88  DVVFPLLHGPNGEDGTIQGMLELLNIPYVGNGVLASSAGMDKVVMKHLFAQVGLAQAKYA 147

Query: 110 SILVNRFTM-------DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
           + L   +T        + +  +  P  +KP   GSS+GI   +  + +        ++ +
Sbjct: 148 AFLKKDWTRSPKESCEEVEQELGYPCFVKPANLGSSVGISKCRNREELQKAF--ELAFQY 205

Query: 163 GDQLLIEQYVDGIELTCGVMG--DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
             ++++E+ ++G E+  GV+G  D    V     PK+DFY Y+ KY   ++  ++PA + 
Sbjct: 206 DRKVVVEEGINGREIEIGVLGNDDPKCSVVGEIAPKTDFYDYKAKYEDGDTDLMIPAIVT 265

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280
            + Y  +  +A  A +AI   G+ R+DF F     +V   E+N  PG TP S+FP +   
Sbjct: 266 DEEYATISDMAIKAFKAIDGSGLVRADF-FLTADGEVLINEVNTMPGFTPFSMFPLLWKE 324

Query: 281 AGYSFRELLLWMVE 294
           AG  + +L+  +VE
Sbjct: 325 AGVEYADLIEQLVE 338


>gi|297564289|ref|YP_003683262.1| D-alanine/D-alanine ligase [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
 gi|296848738|gb|ADH70756.1| D-alanine/D-alanine ligase [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
          Length = 350

 Score =  124 bits (312), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 83/262 (31%), Positives = 141/262 (53%), Gaps = 14/262 (5%)

Query: 45  VLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCG 104
           +LA  + D+ F V+HG +GEDG +Q +LELL +PY  +G+LASA  MDK  +K ++ + G
Sbjct: 91  ILALGEADVVFPVIHGPYGEDGTIQGMLELLGVPYVGNGVLASATGMDKATTKTLLRAAG 150

Query: 105 VPVCPSILV----NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160
           +PV   +++    +  +   +  +  P  +KP + GSSLG+  +  D S  L+    ++ 
Sbjct: 151 LPVARDVVLRGPDDEVSPQERAELGLPVFVKPARSGSSLGVTRV-GDWS-ELEAAVKTAR 208

Query: 161 NHGDQLLIEQYVDGIELTCGVMG--DASLDVT---EIAVPKSD-FYSYELKYSSLNSTHV 214
               ++L+E+ V G E+   V+   D +L V    EI V  ++ F+ Y+ KY   ++   
Sbjct: 209 EFDTKVLVEEAVVGREVDLAVLELPDGALKVGPPLEIRVADTERFFDYDTKYGG-DAVFD 267

Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274
           +PA +P+ I  ++  LA    +A+GC G+ R DF     +  V   E+N  PG T  S +
Sbjct: 268 IPADLPVGIQTQLSDLALGVFEAVGCSGLLRVDFFLRGGTEPVVN-EVNTLPGFTAHSQY 326

Query: 275 PEMAAYAGYSFRELLLWMVEDA 296
           P++    G  + ELL  ++  A
Sbjct: 327 PQIWRATGLEYPELLDSLIRTA 348


>gi|86749124|ref|YP_485620.1| D-alanine--D-alanine ligase [Rhodopseudomonas palustris HaA2]
 gi|86572152|gb|ABD06709.1| D-alanine--D-alanine ligase [Rhodopseudomonas palustris HaA2]
          Length = 329

 Score =  124 bits (312), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 101/323 (31%), Positives = 153/323 (47%), Gaps = 47/323 (14%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV-----LAHLKP-DLAF- 55
           +L GG S ER VS++S +A  +AL DA  ++   + D SV  V     LAH +P + AF 
Sbjct: 5   ILFGGTSKERLVSVASAQALHAALPDA--ELWFWNDDDSVHAVTAEALLAHARPFEEAFR 62

Query: 56  ----NV--------------------LHGNFGEDGLVQAILELLEIPYTHSGILASALSM 91
               N+                    LHG   E+G +QA+ E+  +P+T SG  AS L+ 
Sbjct: 63  PAGENIGPLERALDRAAIEQRLLVLGLHGGVAENGELQAMCEMRGVPFTGSGAAASHLAF 122

Query: 92  DKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
           DK+ +K+  +  GV     I +     ++        + KP + GSS G+  I   Q   
Sbjct: 123 DKVAAKRFAAIAGVRAPAGIALA--EAEAALAAHGRLIAKPARDGSSYGLFFINAKQ--- 177

Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA-----SLDVTEIAVPKSDFYSYELKY 206
            DL+        +  LIE +V GIE TCGV+  A     +L   EI VP    + Y  KY
Sbjct: 178 -DLVAVRDAARSEDYLIEPFVSGIEATCGVLEQADGSLLALPPIEI-VPADGGFDYTAKY 235

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
            + ++  + P +    I   +   A  AH+ +GCRG SRSDF+   ++    +LE N  P
Sbjct: 236 LAKSTQEICPGRFAPQISARIMEDAVKAHRVMGCRGYSRSDFIV--VADGPIFLETNTLP 293

Query: 267 GMTPVSIFPEMAAYAGYSFRELL 289
           G+T  S++P+     G +F + L
Sbjct: 294 GLTKASLYPKALQAQGIAFVDFL 316


>gi|221308278|ref|ZP_03590125.1| D-alanyl-alanine synthetase A [Bacillus subtilis subsp. subtilis
           str. 168]
 gi|221312600|ref|ZP_03594405.1| D-alanyl-alanine synthetase A [Bacillus subtilis subsp. subtilis
           str. NCIB 3610]
 gi|221317524|ref|ZP_03598818.1| D-alanyl-alanine synthetase A [Bacillus subtilis subsp. subtilis
           str. JH642]
 gi|221321800|ref|ZP_03603094.1| D-alanyl-alanine synthetase A [Bacillus subtilis subsp. subtilis
           str. SMY]
          Length = 361

 Score =  124 bits (312), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 79/254 (31%), Positives = 133/254 (52%), Gaps = 14/254 (5%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-- 109
           D+ F +LHG  GEDG +Q +LELL IPY  +G+LAS+  MDK+  K + +  G+      
Sbjct: 95  DVVFPLLHGPNGEDGTIQGMLELLNIPYVGNGVLASSAGMDKVVMKHLFAQVGLAQAKYA 154

Query: 110 SILVNRFTM-------DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
           + L   +T        + +  +  P  +KP   GSS+GI   +  + +        ++ +
Sbjct: 155 AFLKKDWTRSPKESCEEVEQELGYPCFVKPANLGSSVGISKCRNREELQKAF--ELAFQY 212

Query: 163 GDQLLIEQYVDGIELTCGVMG--DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
             ++++E+ ++G E+  GV+G  D    V     PK+DFY Y+ KY   ++  ++PA + 
Sbjct: 213 DRKVVVEEGINGREIEIGVLGNDDPKCSVVGEIAPKTDFYDYKAKYEDGDTDLMIPAIVT 272

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280
            + Y  +  +A  A +AI   G+ R+DF F     +V   E+N  PG TP S+FP +   
Sbjct: 273 DEEYATISDMAIKAFKAIDGSGLVRADF-FLTADGEVLINEVNTMPGFTPFSMFPLLWKE 331

Query: 281 AGYSFRELLLWMVE 294
           AG  + +L+  +VE
Sbjct: 332 AGVEYADLIEQLVE 345


>gi|288920000|ref|ZP_06414320.1| D-alanine--D-alanine ligase [Frankia sp. EUN1f]
 gi|288348564|gb|EFC82821.1| D-alanine--D-alanine ligase [Frankia sp. EUN1f]
          Length = 319

 Score =  124 bits (312), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 101/297 (34%), Positives = 148/297 (49%), Gaps = 18/297 (6%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62
           VL GG+S EREVSLSSG     AL   G      DVD +    LA   P +   VLHG  
Sbjct: 9   VLAGGLSVEREVSLSSGSRLHEALSRIGVDTELRDVDDATLTALAGDPPAVVIPVLHGTS 68

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---FTMD 119
           GEDG ++ +L+L  +PY  +   A   + DK  +K  V++ G+    ++ + R     + 
Sbjct: 69  GEDGTIREVLDLYGLPYVGAEPAACRSAFDKAAAKATVTASGISTPRAVTLPREAFHDLG 128

Query: 120 SQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
           +  LI         P V+KP  GGSS G+  +++   +   L+  + + + D  LIEQ V
Sbjct: 129 AAQLIDRVVGRLGLPLVVKPRAGGSSFGVGRVEEAGQLAEALM--ACFGYHDWALIEQAV 186

Query: 173 DGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
            G+E+  GV+    G  +L   EI  P +  Y Y  +Y+   +T + PA++P  +     
Sbjct: 187 TGVEIAVGVVDTGSGPIALPAVEIE-PVTGPYDYAARYTPGATTFITPARLPAAVLDAAA 245

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285
             A  AHQA+G R +SR+D + D      F LE+NV PGMT  S +P     AG  F
Sbjct: 246 AAAVAAHQALGLRDLSRTDLIVDAAGVPQF-LEVNVAPGMTDTSTWPMCLEAAGLEF 301


>gi|2833428|sp|Q47827|DDL_ENTHR RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|1244574|gb|AAB17904.1| D-alanine:D-alanine ligase [Enterococcus hirae]
          Length = 358

 Score =  124 bits (312), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 76/254 (29%), Positives = 135/254 (53%), Gaps = 16/254 (6%)

Query: 53  LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--S 110
           + F VLHG  GEDG +Q  LE L +PY  +G+L SA +MDK+ +K ++ + GVP  P   
Sbjct: 92  IVFPVLHGPNGEDGTIQGFLETLNLPYVGAGVLTSACAMDKIMTKYILQAAGVPQVPYVP 151

Query: 111 ILVNRFTMDSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
           +L N++  + + +          P  +KP   GSS+GI   K +    L    + ++ + 
Sbjct: 152 VLKNQWKENPKKIFDQCEGSLLYPMFVKPANMGSSVGI--SKAENREELQNALALAYQYD 209

Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
            + ++EQ ++  E+   V+G+  +  T   E+ V    FY Y+ KY +      +PA++P
Sbjct: 210 SRAIVEQGIEAREIEVAVLGNEDVRTTLPGEV-VKDVAFYDYDAKYINNKIEMQIPAEVP 268

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280
            ++Y++ Q  A +A+  +G  G+SR DF F     ++F  E+N  PG T  S++P +   
Sbjct: 269 EEVYQKAQEYAKIAYTMLGGSGLSRCDF-FLTNKNELFLNELNTMPGFTQFSMYPLLWEN 327

Query: 281 AGYSFRELLLWMVE 294
            G  + +L+  +++
Sbjct: 328 MGLKYGDLIEELIQ 341


>gi|222159801|gb|ACM47278.1| D-Ala:D-Ala ligase Ddl [Enterococcus avium]
          Length = 359

 Score =  124 bits (312), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 74/254 (29%), Positives = 133/254 (52%), Gaps = 16/254 (6%)

Query: 53  LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--S 110
           + F VLHG  GEDG +Q  LE L++PY  +G++ SA +MDK+ +K ++ + G+P  P   
Sbjct: 97  IVFPVLHGPNGEDGTIQGFLETLDMPYVGAGVMTSACAMDKIMTKYILQAAGIPQVPYVP 156

Query: 111 ILVNRFTMDSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
           +L N++  + + +          P  +KP   GSS+GI   +  + +   L    ++ + 
Sbjct: 157 VLKNQWKENPKQIFDKCEGTLLYPMFVKPANMGSSVGISRAENREELQNAL--QEAYRYD 214

Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
            + L+EQ +D  E+   V+G+  +  T   E+ V +  FY Y  KY +      +PA +P
Sbjct: 215 SRALVEQGIDAREIEVAVLGNDDVRTTLPGEV-VKEEAFYDYNAKYINNTIQMAIPADVP 273

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280
            D+ ++ +  A  A+  +G  G+SR DF F     ++F  E+N  PG T  S++P +   
Sbjct: 274 EDVMQKARDFAKSAYTMLGGSGLSRCDF-FLTNKNELFLNELNTMPGFTEFSMYPLLWEN 332

Query: 281 AGYSFRELLLWMVE 294
            G  + +L+  +++
Sbjct: 333 MGLKYSDLIEELIQ 346


>gi|306991644|pdb|3K3P|A Chain A, Crystal Structure Of The Apo Form Of D-Alanine:d-Alanine
           Ligase (Ddl) From Streptococcus Mutans
 gi|306991645|pdb|3K3P|B Chain B, Crystal Structure Of The Apo Form Of D-Alanine:d-Alanine
           Ligase (Ddl) From Streptococcus Mutans
          Length = 383

 Score =  124 bits (312), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 102/334 (30%), Positives = 164/334 (49%), Gaps = 46/334 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKV---------------------SQIDVD 39
           + +L GG S+ER+VS+ S ++   A+    F V                     S+ D  
Sbjct: 40  LVLLYGGRSAERDVSVLSAESVMRAINYDNFLVKTYFITQAGDFIKTQEFDSQPSETDKL 99

Query: 40  RSVGLVLA--HLKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
            +   ++A   +KP        + F VLHG  GEDG +Q  LE+L++PY  + IL+S+++
Sbjct: 100 MTNDTIIASQKIKPSDIYEEEAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGTNILSSSVA 159

Query: 91  MDKMRSKQVV-SSCGVPVCPSI-------LVNRFTMDSQHLISPPYVIKPLKGGSSLGII 142
           MDK+ + QV+ S+  +P    +       L ++     + LI P +V KP   GSS+GI 
Sbjct: 160 MDKITTNQVLESATTIPQVAYVALIEGEPLESKLAEVEEKLIYPVFV-KPANMGSSVGI- 217

Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDF 199
             K +    L    + +  +  ++LIEQ VD  E+  G++G+  +  T   EI V    F
Sbjct: 218 -SKAENRTDLKQAIALALKYDSRVLIEQGVDAREIEVGILGNTDVKTTLPGEI-VKDVAF 275

Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
           Y YE KY     T  +PA+I   I ++++  A  A + +GC G+SR DF       KV+ 
Sbjct: 276 YDYEAKYIDNKITMAIPAEIDPVIVEKMRDYAATAFRTLGCCGLSRCDFFLTE-DGKVYL 334

Query: 260 LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            E+N  PG T  S++P +    G S+  L+  +V
Sbjct: 335 NELNTMPGFTQWSMYPLLWENMGLSYSVLIEELV 368


>gi|74058496|gb|AAZ98839.1| VanD [Enterococcus gallinarum]
          Length = 343

 Score =  124 bits (312), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 92/337 (27%), Positives = 156/337 (46%), Gaps = 47/337 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +AVL GG S E  VS+ S    A+ ++   ++   I + +S G+     KP         
Sbjct: 6   VAVLFGGCSEEHTVSIKSAMELAANIDTEKYQPFYIGITKS-GVWKLCEKPCLDWEQYAK 64

Query: 52  ---------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84
                                      D+ F ++HG FGEDG +Q +LEL  IPY    I
Sbjct: 65  YPVVFSPGRNTHGFLIQKEDRYEIQPVDVVFPIIHGKFGEDGSIQGLLELSGIPYVGCDI 124

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
            +S + MDK  +   V + G+ V    ++           S P  +KP + GSS G+  +
Sbjct: 125 QSSVICMDKSLAYTTVKNAGIEVPDFQIIQDGDSPKTECFSFPLFVKPARSGSSFGVNKV 184

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS----LDVTEIAVPKSDFY 200
            K + +   + ++  ++   ++LIEQ V G E+ C V+G  +     +V +I++    F 
Sbjct: 185 DKAEDLCAAINEARQYDR--KVLIEQAVSGSEVGCAVLGTGTDLIVGEVDQISLKHGFFK 242

Query: 201 SYEL---KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
            ++    +  S N+T  +PA +P  + + +Q+ A   +Q +GCRG++R D LF      +
Sbjct: 243 IHQEAQPEKGSENATIEVPADLPAKVRERIQKTAKKIYQVLGCRGLARID-LFLREDGHI 301

Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
              E+N  PG T  S +P M   AG++  EL+  ++E
Sbjct: 302 VLNEVNTMPGFTSYSRYPCMMTAAGFTLSELIDRLIE 338


>gi|254967107|gb|ACT97596.1| putative D-alanyl-alanine synthetase A [uncultured organism]
          Length = 325

 Score =  124 bits (312), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 92/324 (28%), Positives = 157/324 (48%), Gaps = 34/324 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGF-----------------KVSQIDVDRS-V 42
           +A+LMGG SSE EVSL S       L+   +                 K  +  +D++  
Sbjct: 4   IAILMGGYSSEAEVSLKSAATVVECLDKNKYRPYPILIAKDRWVYTDPKGQEFPIDKNDF 63

Query: 43  GLVLAHLKPDL--AFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
            L +   K     AFN +HG  GEDG +QA    + IP T   + ASAL+ +K     V+
Sbjct: 64  SLTIGGEKITFACAFNAIHGTPGEDGHLQAYFSFVGIPITGCSMYASALTFNKRDMLSVL 123

Query: 101 SSCGVPVCPSILVNR----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
              G+P   +  +NR     T +    +  P  +K  + GSS+G+     ++ I  D   
Sbjct: 124 KPYGIPRAKAYYLNRGEHFSTREIIKTVGLPCFVKANRSGSSIGVFKAYNEKDI--DEAI 181

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNST 212
             ++    +++IE+++ G E++ GV+        L +TEI V ++DF+ +E KY    S 
Sbjct: 182 EKAFEVDSEIIIEEFLKGTEVSVGVITYRGKKRVLPITEI-VSENDFFDHEAKYEG-KSQ 239

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
            + PA++  +  K+V+ +A   +  +  +G SRS+++   ++ +   LE+N  PG+T  S
Sbjct: 240 EITPARLSEEERKKVEEIALRVYNLLQMKGFSRSEYIL--VNGQPHLLEMNTTPGLTKAS 297

Query: 273 IFPEMAAYAGYSFRELLLWMVEDA 296
           I P+ A  AG +   L    +E+A
Sbjct: 298 ILPQQAKAAGITLANLFDNAIEEA 321


>gi|296138260|ref|YP_003645503.1| D-alanine/D-alanine ligase [Tsukamurella paurometabola DSM 20162]
 gi|296026394|gb|ADG77164.1| D-alanine/D-alanine ligase [Tsukamurella paurometabola DSM 20162]
          Length = 344

 Score =  124 bits (312), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 96/334 (28%), Positives = 150/334 (44%), Gaps = 44/334 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR--------------SVGLVL 46
           + VL GG S E  VS+ S +  A  L+   ++   I + R                G V 
Sbjct: 6   IGVLFGGASEEHPVSVKSAREVARNLDPDRYEAHWIGITRDGAWRLCAGPENDWESGSVP 65

Query: 47  AHLKPDLA--------------------FNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           A L PD                        VLHG FGEDG VQ + EL  + Y    + +
Sbjct: 66  AMLSPDRGDHGLLVREAGRYRVVELDVILPVLHGRFGEDGAVQGLCELSGVDYIGCDVPS 125

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           SA+ MDK  +  + S+ G+      +V          ++ P  +KP + GSS G+  +  
Sbjct: 126 SAICMDKSLAYVISSAAGIATPEFRIVAGHEAPDPAELAYPVFVKPARSGSSFGVSKVTA 185

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS----LDVTEIAVPKSDFYSY 202
              +P  +  +  ++   ++LIE+ V G E+ C V+GD       +V  IA+    F  +
Sbjct: 186 PDDLPAAIEAAREYD--SKVLIERAVAGSEVGCAVLGDGRGLTVGEVDHIALSHGFFRIH 243

Query: 203 EL---KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
           +    +  S NST ++PA IP +    VQ+ A   ++A+GC G++R D    P   +V  
Sbjct: 244 QEDSPETGSENSTPIVPADIPAESRARVQQTARAIYRALGCSGLARVDMFLTP-GGEVVL 302

Query: 260 LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            E+N  PG+T  S +P M + AG S  E+L  +V
Sbjct: 303 NEVNTLPGLTSYSRYPRMMSAAGISLAEVLDRLV 336


>gi|15896148|ref|NP_349497.1| D-alanyl-alanine synthetase A [Clostridium acetobutylicum ATCC 824]
 gi|25452916|sp|Q97F58|DDL_CLOAB RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|15025943|gb|AAK80837.1|AE007787_3 D-alanine-D-alanine ligase [Clostridium acetobutylicum ATCC 824]
 gi|325510303|gb|ADZ21939.1| D-alanine-D-alanine ligase [Clostridium acetobutylicum EA 2018]
          Length = 343

 Score =  124 bits (312), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 84/337 (24%), Positives = 166/337 (49%), Gaps = 43/337 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKAC----------------------------ASALEDAGFK 32
           +A+L GG S+E EVS  S  +                             A  +E+  ++
Sbjct: 5   VAILFGGQSTEHEVSRVSAASVLRNIDTSKYDLFPIGITKKGEWFEYTGSADKIENGEWE 64

Query: 33  VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
             +     +   +L + + D+ F V+HG +GEDG +Q + +L+ +P     +L+S++ MD
Sbjct: 65  KDEFYKSPNGQAILFNKEVDVVFPVMHGLYGEDGTIQGLCKLVGVPCVGPSVLSSSVCMD 124

Query: 93  KMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISP-------PYVIKPLKGGSSLGIIV 143
           K+ +K V+    +     ++V+   +    + +I            IKP   GSS+GI  
Sbjct: 125 KVYTKYVLEHFNIKQADYVVVHAHEYKTSKEEIIKEIENKLGYAVFIKPSNSGSSVGITK 184

Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFY 200
               + +   L ++  ++   ++L+E+ ++  E+   V+G+         EI VP  +FY
Sbjct: 185 AHNRKELEAGLEEAMKYDR--KILVEEALNAREIEVAVLGNEEPKAAIPGEI-VPAKEFY 241

Query: 201 SYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260
            YE KY +  S  ++PA +  +  ++++ +A   ++A+ C G+SR DFL D  + +++  
Sbjct: 242 DYEAKYENAASKLLIPANLSNENLEKIKNIAIEVYKALDCSGMSRVDFLVDKDTTEMYLN 301

Query: 261 EINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           E+N  PG T +S++P++ A AG  + +L+  ++E A+
Sbjct: 302 EVNTIPGFTSISMYPKLWAAAGKDYSKLIDELIELAA 338


>gi|209549694|ref|YP_002281611.1| D-alanyl-alanine synthetase A [Rhizobium leguminosarum bv. trifolii
           WSM2304]
 gi|209535450|gb|ACI55385.1| D-alanine/D-alanine ligase [Rhizobium leguminosarum bv. trifolii
           WSM2304]
          Length = 357

 Score =  124 bits (312), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 100/344 (29%), Positives = 165/344 (47%), Gaps = 55/344 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           +AVL GG S+E EVS+ S      AL+   +    + + R    +L              
Sbjct: 10  IAVLFGGRSAEHEVSILSATNVMGALKPEKYDAIPVFITREGQWLLSNFEDGVLARPSSG 69

Query: 47  -----------------AHLKP------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                            AH  P      D+ F VLHG  GEDG VQ + E+  +P    G
Sbjct: 70  TEICIVPGGRGRMLAIPAHGAPHELARIDILFPVLHGLHGEDGSVQGLAEVARVPLAGCG 129

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSL 139
           IL SA ++DK  +K+++ + G+PV  S+ +      S    +  +  P  IKP + GSS+
Sbjct: 130 ILGSAAALDKDIAKRLLRAAGLPVARSVTMREDAAPSLAALESELGLPLFIKPARQGSSV 189

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV-----TEIAV 194
           G+  +   Q     L +  ++ H   LL E++V G E+   V+ DA+ ++      EI  
Sbjct: 190 GVAKVHASQEFAPALAE--AFRHDRMLLAEEFVAGREIEFSVLEDAAGELFVSRPGEIVP 247

Query: 195 PKS-DFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            +S  FYSY+ KY     +   +PA +P ++   ++ +A  A +A+GC G++R DF    
Sbjct: 248 AESHGFYSYDAKYIDEKGAALKVPADLPEEVEAAMRDMAASAFRAVGCDGMARVDFF--- 304

Query: 253 LSRKVFWL--EINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           L++ + +L  EIN  PG T +S++ +  A +G  + E++  +VE
Sbjct: 305 LTQDMRFLVNEINTIPGFTDISMYSKAMAASGVGYAEIIDRLVE 348


>gi|148543712|ref|YP_001271082.1| D-alanyl-alanine synthetase A [Lactobacillus reuteri DSM 20016]
 gi|227363309|ref|ZP_03847439.1| D-alanine--D-alanine ligase [Lactobacillus reuteri MM2-3]
 gi|325682083|ref|ZP_08161601.1| D-alanine-D-alanine ligase [Lactobacillus reuteri MM4-1A]
 gi|190359177|sp|A5VIS1|DDL_LACRD RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|148530746|gb|ABQ82745.1| D-alanine--D-alanine ligase [Lactobacillus reuteri DSM 20016]
 gi|227071672|gb|EEI09965.1| D-alanine--D-alanine ligase [Lactobacillus reuteri MM2-3]
 gi|324978727|gb|EGC15676.1| D-alanine-D-alanine ligase [Lactobacillus reuteri MM4-1A]
          Length = 378

 Score =  124 bits (312), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 99/347 (28%), Positives = 170/347 (48%), Gaps = 60/347 (17%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVS-------------------------- 34
           +A+L GG SSE +VS  S      AL+   + VS                          
Sbjct: 7   IALLFGGNSSEHDVSKRSAHNIYDALDKEKYDVSLFMFTKDGILLGNEDSQKIFDGEPED 66

Query: 35  --------QIDVDRSVGLVLA---HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                   ++D+   +  ++A     + D  F V+HGN GEDG +Q + +LL  PY  S 
Sbjct: 67  QVVAEAYQKMDMSSPLAPIMALNEQKEIDFFFPVIHGNLGEDGTIQGLFKLLNKPYVGSN 126

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYV---------IKPLK 134
           I ASA+S DK  +K+++S  G+   P ++V   T ++Q   S   +         +KP K
Sbjct: 127 IAASAMSFDKDLTKKIISQAGIRNTPYVVV---TPENQADYSWGRIEEKLGNLTFVKPAK 183

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDA---SLDVT 190
            GSS+GI  +   +     L  +  +++  ++L+EQ + +  E+   ++G+    +  + 
Sbjct: 184 QGSSVGIHRVTNAEEYEKALDDAFKYDY--KILVEQGIANPQEIEISILGNEHPIASKLG 241

Query: 191 EIAVPKSD-FYSYELKYSSLNS-THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
            + VPK D FY YE K+   +     LP K+P  +  E+  +A  A++A+G +G++R DF
Sbjct: 242 AVRVPKDDPFYDYENKFVDASGVVFELPVKLPQYLVDEITDMALKAYKALGMKGMARIDF 301

Query: 249 LFDPLSRKVFWL-EINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           L D  S  V +L E N  PG T +S++P+M   +G S+ +L+  +++
Sbjct: 302 LVD--SNNVPYLGEPNTLPGFTNISLYPQMWEVSGISYSDLIDRLIQ 346


>gi|321314130|ref|YP_004206417.1| D-alanyl-alanine synthetase A [Bacillus subtilis BSn5]
 gi|291482865|dbj|BAI83940.1| D-alanyl-alanine synthetase [Bacillus subtilis subsp. natto
           BEST195]
 gi|320020404|gb|ADV95390.1| D-alanyl-alanine synthetase A [Bacillus subtilis BSn5]
          Length = 361

 Score =  124 bits (312), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 79/254 (31%), Positives = 132/254 (51%), Gaps = 14/254 (5%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-- 109
           D+ F +LHG  GEDG +Q +LELL IPY  +G+LAS+  MDK+  K + +  G+      
Sbjct: 95  DVVFPLLHGPNGEDGTIQGMLELLNIPYVGNGVLASSAGMDKVVMKHLFAQAGLAQAKYA 154

Query: 110 SILVNRFTMDS-------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
           + L   +T          +  +  P  +KP   GSS+GI   +  + +        ++ +
Sbjct: 155 AFLKKDWTRSPKESCEQVEQELGYPCFVKPANLGSSVGISKCRNREELQKAF--ELAFQY 212

Query: 163 GDQLLIEQYVDGIELTCGVMG--DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
             ++++E+ ++G E+  GV+G  D    V     PK+DFY Y+ KY   ++  ++PA + 
Sbjct: 213 DRKVVVEEGINGREIEIGVLGNDDPKCSVVGEIAPKTDFYDYKAKYEDGDTDLMIPAIVT 272

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280
            + Y  +  +A  A +AI   G+ R+DF F     +V   E+N  PG TP S+FP +   
Sbjct: 273 DEEYATISDMAIKAFKAIDGSGLVRADF-FLTADGEVLINEVNTMPGFTPFSMFPLLWKE 331

Query: 281 AGYSFRELLLWMVE 294
           AG  + +L+  +VE
Sbjct: 332 AGVEYADLIEQLVE 345


>gi|229823359|ref|ZP_04449428.1| hypothetical protein GCWU000282_00657 [Catonella morbi ATCC 51271]
 gi|229787134|gb|EEP23248.1| hypothetical protein GCWU000282_00657 [Catonella morbi ATCC 51271]
          Length = 367

 Score =  124 bits (312), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 78/248 (31%), Positives = 129/248 (52%), Gaps = 14/248 (5%)

Query: 53  LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
           + F VLHG  GEDG +Q  LE+L +PY  +G+ ASA  MDK+ SKQ+    G+P  P + 
Sbjct: 101 IVFPVLHGPNGEDGTIQGFLEVLGMPYVGAGVTASACGMDKVISKQLFHQAGLPQVPYVA 160

Query: 113 VN--RFTMDSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
            +   +    +  ++        P  +KP   GSS+GI      + +   + ++  ++  
Sbjct: 161 FDSREWAQSPEEWMNRCEGNLLYPLFVKPANMGSSVGISKATTTEELRAAVEKALQFDR- 219

Query: 164 DQLLIEQYVDGIELTCGVMG--DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL 221
            ++++EQ +   E    V+G  DA   V    V  +DFY Y+ KY +      +PA++P 
Sbjct: 220 -RIVVEQGISAQECEVAVLGNDDAHASVVGRLVKTADFYDYDEKYVNNTVEMEIPAQLPD 278

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYA 281
            I  ++Q  A  A++A+  +G+SR DF F   S  ++  EIN  PG TP S++P +    
Sbjct: 279 AISDKIQEYALRAYRALDGKGLSRVDF-FVTASHDIYINEINTMPGFTPYSMYPCLWEAT 337

Query: 282 GYSFRELL 289
           G + R+L+
Sbjct: 338 GLNTRDLI 345


>gi|88809162|ref|ZP_01124671.1| D-alanine--D-alanine ligase [Synechococcus sp. WH 7805]
 gi|88787104|gb|EAR18262.1| D-alanine--D-alanine ligase [Synechococcus sp. WH 7805]
          Length = 353

 Score =  124 bits (311), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 78/258 (30%), Positives = 131/258 (50%), Gaps = 15/258 (5%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+ + VLHG  GEDG VQ +  L+  P+  SG+L SA+ MDK+  K   ++ G+   P +
Sbjct: 96  DIWYPVLHGPNGEDGTVQGLFTLMNKPFVGSGVLGSAVGMDKLAMKAAFAAAGLSQVPYL 155

Query: 112 LVNRFTMDSQHLISP-----------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160
            +N   ++    +             P  +KP   GSS+GI   +    +   L Q++  
Sbjct: 156 GLNAIDLEEPERLEQLLTRLEKELGYPCFVKPANLGSSVGITKARTRDELLDGLHQAAVL 215

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK--SDFYSYELKYSSLNSTHVLPAK 218
           +   +LL+EQ V   EL C V+G   L  + +   +  +D+Y YE KY+   S  ++PA 
Sbjct: 216 D--TRLLVEQGVKARELECAVLGRRHLRASVVGEIRFDADWYDYETKYTEGRSQTLIPAP 273

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278
           +P  + +++Q +A  A QA+   G +R D  +D  S +++  EIN  PG T  S++P + 
Sbjct: 274 LPASVSQQIQAMAIRACQAVHAYGQARVDVFYDETSGQIWLNEINTLPGFTSQSMYPTLW 333

Query: 279 AYAGYSFRELLLWMVEDA 296
              G    +L+  +V+ A
Sbjct: 334 EATGIPLPQLVAQLVDTA 351


>gi|184153120|ref|YP_001841461.1| D-alanyl-alanine synthetase A [Lactobacillus reuteri JCM 1112]
 gi|183224464|dbj|BAG24981.1| D-alanine--D-alanine ligase [Lactobacillus reuteri JCM 1112]
          Length = 382

 Score =  124 bits (311), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 99/347 (28%), Positives = 170/347 (48%), Gaps = 60/347 (17%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVS-------------------------- 34
           +A+L GG SSE +VS  S      AL+   + VS                          
Sbjct: 11  IALLFGGNSSEHDVSKRSAHNIYDALDKEKYDVSLFMFTKDGILLGNEDSQKIFDGEPED 70

Query: 35  --------QIDVDRSVGLVLA---HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                   ++D+   +  ++A     + D  F V+HGN GEDG +Q + +LL  PY  S 
Sbjct: 71  QVVAEAYQKMDMSSPLAPIMALNEQKEIDFFFPVIHGNLGEDGTIQGLFKLLNKPYVGSN 130

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYV---------IKPLK 134
           I ASA+S DK  +K+++S  G+   P ++V   T ++Q   S   +         +KP K
Sbjct: 131 IAASAMSFDKDLTKKIISQAGIRNTPYVVV---TPENQADYSWGRIEEKLGNLTFVKPAK 187

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDA---SLDVT 190
            GSS+GI  +   +     L  +  +++  ++L+EQ + +  E+   ++G+    +  + 
Sbjct: 188 QGSSVGIHRVTNAEEYEKALDDAFKYDY--KILVEQGIANPQEIEISILGNEHPIASKLG 245

Query: 191 EIAVPKSD-FYSYELKYSSLNS-THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
            + VPK D FY YE K+   +     LP K+P  +  E+  +A  A++A+G +G++R DF
Sbjct: 246 AVRVPKDDPFYDYENKFVDASGVVFELPVKLPQYLVDEITDMALKAYKALGMKGMARIDF 305

Query: 249 LFDPLSRKVFWL-EINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           L D  S  V +L E N  PG T +S++P+M   +G S+ +L+  +++
Sbjct: 306 LVD--SNNVPYLGEPNTLPGFTNISLYPQMWEVSGISYSDLIDRLIQ 350


>gi|119025204|ref|YP_909049.1| D-alanyl-alanine synthetase A [Bifidobacterium adolescentis ATCC
           15703]
 gi|166198475|sp|A0ZZT4|DDL_BIFAA RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|118764788|dbj|BAF38967.1| D-alanine-D-alanine ligase [Bifidobacterium adolescentis ATCC
           15703]
          Length = 378

 Score =  124 bits (311), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 78/272 (28%), Positives = 134/272 (49%), Gaps = 30/272 (11%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D  F VLHG +GEDG +Q + E++ +PY   G+LASA  MDK  +K ++++ G+PV P I
Sbjct: 104 DAVFPVLHGPYGEDGTIQGLFEMMGVPYVGCGVLASAACMDKHYTKVLLAAAGIPVAPGI 163

Query: 112 LVN--------RFTMDSQHLISP--------PYVIKPLKGGSSLGIIVIKKD-QSIPLDL 154
            ++         F  D+  +++         P  +KP + GSS G+  ++ +  +  L  
Sbjct: 164 TLDARSFDKASEFKTDADAIMAQVSEAGLQYPLFVKPSRAGSSFGVTKVEHEGDAAELAA 223

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP-----------KSDFYSYE 203
               +  H  ++L+EQ +D  E+ C V+   + +  + + P              FY ++
Sbjct: 224 AVYEASRHDWRILVEQGIDAREIECAVLCPKAGEAPQASWPGEIVLDKRAEGDDQFYDFD 283

Query: 204 LKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
            KY    ++HV +PA +P +    V+  A  A  A+   G+SR D  F     KV   EI
Sbjct: 284 SKYMDAAASHVEVPANLPEETLNLVRETAKKAFVAVDGAGLSRVD-TFVTKDGKVMVNEI 342

Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           N  PG T +S++P+     G  + +L+  ++E
Sbjct: 343 NTMPGFTSISMYPKAWEATGVRYTDLITKLIE 374


>gi|254966989|gb|ACT97529.1| putative D-alanyl-alanine synthetase A [uncultured organism]
          Length = 331

 Score =  124 bits (311), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 93/325 (28%), Positives = 158/325 (48%), Gaps = 37/325 (11%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40
           +A++ GG SSE +VSL SG+   S  +   + +  +DV                    D 
Sbjct: 8   IAIVCGGDSSEHDVSLRSGQGLYSFFDKERYNIYLVDVKGTDWHVALDNGETIEIDKNDF 67

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           S  +   H+  D A+  +HG  GE+G++Q   +L+ +PY+ SG+L  A++ DK      +
Sbjct: 68  SFVMNGKHVYFDYAYITIHGQPGENGVMQGYFDLIHLPYSTSGVLVEAMTFDKYVLNNYL 127

Query: 101 SSCGVPVCPSILVNRF-TMDSQHL---ISPPYVIKPLKGGSSLGIIVIKK-DQSIPLDLL 155
              G+ V  SIL+ R    D + +   I  P  +KP   GSS G+  +K  DQ  P   +
Sbjct: 128 RGFGINVADSILLRRGEAYDEEEIAKRIGMPCFVKPAADGSSFGVSKVKNADQLAPALRV 187

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDAS----LDVTEIAVPKSDFYSYELKYSSLNS 211
              ++   ++++IE ++DG E++ G+   A     L  TE+ V  ++F+ Y+ KY+    
Sbjct: 188 ---AFMESNEVMIEGFLDGTEISQGIYKTAEKTVVLPATEV-VTNNEFFDYDAKYNG-QV 242

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF--DPLSR-KVFWLEINVQPGM 268
             + PA++  +  +EV +     +  +   GI R D++   D   + KV  LEIN  PGM
Sbjct: 243 QEITPARLSPETAEEVAKTTSRIYDILHANGIIRIDYIISKDKDGKDKVNMLEINTTPGM 302

Query: 269 TPVSIFPEMAAYAGYSFRELLLWMV 293
           T  S  P+    AG   +++L  +V
Sbjct: 303 TVTSFIPQQVRAAGLDIKDVLSEIV 327


>gi|194015885|ref|ZP_03054500.1| D-alanine--D-alanine ligase (D-alanylalanine
           synthetase)(D-Ala-D-Ala ligase) [Bacillus pumilus ATCC
           7061]
 gi|194012240|gb|EDW21807.1| D-alanine--D-alanine ligase (D-alanylalanine
           synthetase)(D-Ala-D-Ala ligase) [Bacillus pumilus ATCC
           7061]
          Length = 360

 Score =  124 bits (311), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 89/261 (34%), Positives = 140/261 (53%), Gaps = 20/261 (7%)

Query: 47  AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP 106
           A  K D+ F +LHG  GEDG +Q +LELL IPY  +G+LASA  MDK+  K V +  G+ 
Sbjct: 89  ADEKIDVVFPLLHGPNGEDGTMQGLLELLNIPYVGNGVLASAAGMDKVMMKDVFAQAGLA 148

Query: 107 VCPSILVN-----RFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSI--PLDLL 155
               +  N     + T DS    + ++  P  +KP   GSS+GI   +  + +    DL 
Sbjct: 149 QAKHLSFNKKDYEKATADSLEQVEQVLGYPCFVKPANMGSSVGISKCRSKEELQTAFDL- 207

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD---VTEIAVPKSDFYSYELKYSSLNST 212
              ++ +  ++++E+ V G EL  GV+G+       V EIA PK+DFY Y+ KY   ++ 
Sbjct: 208 ---AFQYDRRVVVEEGVVGRELEIGVLGNDEPKCSVVGEIA-PKTDFYDYKAKYEDGDTD 263

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
            ++PA +  D YK +  +A  A +++   G+ R+DF       +V   E+N  PG TP S
Sbjct: 264 LIIPASVSEDEYKTIHDMAIKAFKSLDGSGLVRADFFLTE-KGEVLINEVNTMPGFTPFS 322

Query: 273 IFPEMAAYAGYSFRELLLWMV 293
           +FP +  + G  + EL+  +V
Sbjct: 323 MFPLLWKHTGVEYPELIEKLV 343


>gi|157691220|ref|YP_001485682.1| D-alanyl-alanine synthetase A [Bacillus pumilus SAFR-032]
 gi|167012326|sp|A8FA55|DDL_BACP2 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|157679978|gb|ABV61122.1| D-alanine--D-alanine ligase [Bacillus pumilus SAFR-032]
          Length = 360

 Score =  124 bits (311), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 84/259 (32%), Positives = 132/259 (50%), Gaps = 16/259 (6%)

Query: 47  AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP 106
           A  K D+ F +LHG  GEDG +Q +LELL IPY  +G+LASA  MDK+  K V +  G+ 
Sbjct: 89  ADEKIDVVFPLLHGPNGEDGTMQGLLELLNIPYVGNGVLASAAGMDKVMMKDVFAQAGLA 148

Query: 107 VCPSILVN-----RFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
               +  N     + T DS    + ++  P  +KP   GSS+GI   +  + +      +
Sbjct: 149 QAKHLSFNKKDYEKATPDSLEQVEQVLGYPCFVKPANMGSSVGISKCRSKEELQTAFDLA 208

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLD---VTEIAVPKSDFYSYELKYSSLNSTHV 214
             ++    +        IE+  GV+G+       V EIA PK+DFY Y+ KY   ++  +
Sbjct: 209 FQYDRRVVVEEGVVGREIEI--GVLGNDEPKCSVVGEIA-PKTDFYDYKAKYEDGDTDLI 265

Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274
           +PA +  D YK +  +A  A +++   G+ R+DF       +V   E+N  PG TP S+F
Sbjct: 266 IPASVSEDEYKTIHDMAIKAFKSLDGSGLVRADFFLTE-KGEVLINEVNTMPGFTPFSMF 324

Query: 275 PEMAAYAGYSFRELLLWMV 293
           P +  + G  + EL+  +V
Sbjct: 325 PLLWKHTGVEYPELIEKLV 343


>gi|50082937|gb|AAT70090.1| D-alanyl-D-alanine ligase [Paenibacillus thiaminolyticus]
 gi|66731638|gb|AAY52005.1| VanA [Paenibacillus thiaminolyticus]
          Length = 343

 Score =  124 bits (311), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 96/332 (28%), Positives = 158/332 (47%), Gaps = 47/332 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR---------------SVGLV 45
           +A+L GG S E +VS+ S +  A+ +++  ++   I + +               +    
Sbjct: 6   VAILFGGCSEEHDVSVKSAREIAANIDNEKYEPLYIGITKFGVWKMCEKPCAEWENSNCY 65

Query: 46  LAHLKPD--------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
            A L PD                    +AF+VLHG  GEDG +Q + EL  IPY    I 
Sbjct: 66  SAVLSPDKKMHGLLVKKNHEYEIHHVDVAFSVLHGKSGEDGSIQGLFELSGIPYVGCDIQ 125

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145
           +SA+ MDK  +  +  + G+      ++N+    +    + P  +KP + GSS G  V K
Sbjct: 126 SSAICMDKSLTYTIAKNAGIATPDFWVINKDDKPAIDAFTYPVFVKPARSGSSYG--VKK 183

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL----DVTEIAVPKSDFYS 201
            + +  LD    S+  +  ++LIEQ V G E+ C V+G++S     +V +I +    F  
Sbjct: 184 VNGADELDAAIESARQYDSKILIEQAVLGCEVGCAVLGNSSELIVGEVDQIRLQHGIFRI 243

Query: 202 Y---ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD-FLFDPLSRKV 257
           +   E +  S N+   +PA + +++   +Q  A   ++A+GCRG+SR D FL D  S  +
Sbjct: 244 HQEAEPEKGSENAVITIPADLSVEVRGRIQETAKKIYKALGCRGLSRVDMFLQDNGS--I 301

Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
              E+N  PG T  S +P M   AG +  EL+
Sbjct: 302 VLNEVNTLPGFTSYSRYPRMMVAAGITLPELI 333


>gi|313890784|ref|ZP_07824409.1| D-ala D-ala ligase N-terminal domain protein [Streptococcus
           pseudoporcinus SPIN 20026]
 gi|313120885|gb|EFR43999.1| D-ala D-ala ligase N-terminal domain protein [Streptococcus
           pseudoporcinus SPIN 20026]
          Length = 348

 Score =  124 bits (311), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 83/253 (32%), Positives = 139/253 (54%), Gaps = 19/253 (7%)

Query: 53  LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP-VCPSI 111
           + F +LHG  GEDG +Q  LE+L++PY  + IL S+++MDK+ +K+V+ S GVP V   +
Sbjct: 88  VVFPILHGPMGEDGSIQGFLEVLKMPYIGTSILGSSVAMDKITTKRVLESAGVPQVAYKV 147

Query: 112 LVNRFTM-----DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQL 166
            V   ++     ++   +S P  +KP   GSS+GI   K +    L      +  +  ++
Sbjct: 148 FVEGNSLEECLKEALTNLSFPIFVKPANMGSSVGI--SKAESESELREAIQLALQYDSRI 205

Query: 167 LIEQYVDGIELTCGVMGDASLDVTEI----AVPKSDFYSYELKYSSLNSTHVLPAKIPLD 222
           LIEQ V+  E+  G++G+   DVT       V +  FY Y+ KY   N T  +PA++  +
Sbjct: 206 LIEQGVNAREIEVGLLGNT--DVTSTLPGEVVKEVAFYDYQAKYIDNNITMAIPAELETE 263

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAY 280
           +  +++  A  A +A+GC G+SR DF    L+R   ++  E+N  PG T  S++P +   
Sbjct: 264 LANKMRAYAENAFKALGCCGLSRCDFF---LTRDGSIYLNELNTMPGFTQWSMYPLLWEN 320

Query: 281 AGYSFRELLLWMV 293
            G S+ +L+  +V
Sbjct: 321 MGLSYSDLIEKLV 333


>gi|222159803|gb|ACM47279.1| D-Ala:D-Ala ligase Ddl [Enterococcus avium]
          Length = 359

 Score =  124 bits (311), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 74/254 (29%), Positives = 133/254 (52%), Gaps = 16/254 (6%)

Query: 53  LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--S 110
           + F VLHG  GEDG +Q  LE L++PY  +G++ SA +MDK+ +K ++ + G+P  P   
Sbjct: 97  IVFPVLHGPNGEDGTIQGFLETLDMPYVGAGVMTSACAMDKIMTKYILQAAGIPQVPYVP 156

Query: 111 ILVNRFTMDSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
           +L N++  + + +          P  +KP   GSS+GI   +  + +   L    ++ + 
Sbjct: 157 VLKNQWKENPKQIFDKCEGTLLYPMFVKPANMGSSVGISRAENREELQNAL--QEAYRYD 214

Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
            + L+EQ +D  E+   V+G+  +  T   E+ V +  FY Y  KY +      +PA +P
Sbjct: 215 SRALVEQGIDAREIEVAVLGNDDVRTTLPGEV-VKEEAFYDYNAKYINNTIQMAIPADVP 273

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280
            D+ ++ +  A  A+  +G  G+SR DF F     ++F  E+N  PG T  S++P +   
Sbjct: 274 EDVMQKARDFAKSAYPMLGGSGLSRCDF-FLTNKNELFLNELNTMPGFTEFSMYPLLWEN 332

Query: 281 AGYSFRELLLWMVE 294
            G  + +L+  +++
Sbjct: 333 MGLKYSDLIEELIQ 346


>gi|119952997|ref|YP_945206.1| D-alanyl-alanine synthetase A [Borrelia turicatae 91E135]
 gi|254767722|sp|A1QYZ4|DDL_BORT9 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|119861768|gb|AAX17536.1| D-alanine--D-alanine ligase [Borrelia turicatae 91E135]
          Length = 365

 Score =  124 bits (311), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 74/256 (28%), Positives = 136/256 (53%), Gaps = 17/256 (6%)

Query: 49  LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
           LK D+ F ++HG  GEDG +Q  L++++IP   SGIL SA+S++K   K ++ S  +P+ 
Sbjct: 87  LKIDVVFPIVHGRTGEDGAIQGFLKIMDIPCVGSGILGSAISINKYFCKLLLKSFNIPLV 146

Query: 109 PSILVNRF---------TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
           P I   ++           D +  +  P ++KP   GSS+GI +   +  I   + ++ +
Sbjct: 147 PFIGFKKYDYLLDKEGIKKDIKQSLDYPVIVKPAMLGSSIGISIAYNETQIEKCIEEAFA 206

Query: 160 WNHGDQLLIEQYVDGIELTCGVMGDASLDV---TEIAVPKSDFYSYELKYSSLNSTHV-- 214
           ++    ++IE+++   E+ C V+G+  + +    EI +    FY Y+ KYS+     V  
Sbjct: 207 YDL--TVVIEKFMRAREIECAVIGNEQIKIFTPGEIVIQDFVFYDYDAKYSTAPGNSVVF 264

Query: 215 -LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273
            +PA +      +++  AF  ++ +  RG++R DFL +  +  V+  EIN  PG T +S+
Sbjct: 265 NIPAHLDTKHLLDIKEYAFFTYKCLELRGMARIDFLIEKDTDLVYINEINTIPGFTDISM 324

Query: 274 FPEMAAYAGYSFRELL 289
           F +M  + G  +  L+
Sbjct: 325 FSKMCEHDGLDYGSLV 340


>gi|33862595|ref|NP_894155.1| D-alanyl-alanine synthetase A [Prochlorococcus marinus str. MIT
           9313]
 gi|39930843|sp|Q7V8L9|DDL_PROMM RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|33634511|emb|CAE20497.1| D-alanine--D-alanine ligase [Prochlorococcus marinus str. MIT 9313]
          Length = 353

 Score =  124 bits (311), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 80/253 (31%), Positives = 134/253 (52%), Gaps = 17/253 (6%)

Query: 55  FNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
           + VLHG  GEDG VQ +  L+  P+  SG+L SALSMDK+  K   ++ G+P  P   V+
Sbjct: 99  YPVLHGPNGEDGTVQGLFTLMGQPFVGSGVLGSALSMDKLAMKAAFAAAGLPQVPYAAVD 158

Query: 115 RFTM--------DSQHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
              +         ++HL   +  P  +KP   GSS+GI   +    + + L +++S +  
Sbjct: 159 AADLLETESRQGVAKHLEAKLKYPCFVKPANLGSSVGISKAQNRNELLIGLDKAASLDR- 217

Query: 164 DQLLIEQYVDGIELTCGVMGDASLD---VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
            ++++EQ V   EL C V+G   L    V EI    +D+Y Y+ KYS   S  ++PA +P
Sbjct: 218 -RIVVEQGVSARELECAVLGKRELQTSVVGEICF-DADWYDYDTKYSENCSHTLIPAPLP 275

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280
             +  +++ LA  A + +   G++R DF ++    +++  EIN  PG T  S++P +   
Sbjct: 276 EGVEAQIRTLALQACRCVAAHGMARVDFFYNAARNEIWLNEINTLPGFTSQSMYPMLWEA 335

Query: 281 AGYSFRELLLWMV 293
           +G +  EL+  +V
Sbjct: 336 SGVTLEELVSQLV 348


>gi|312863893|ref|ZP_07724131.1| D-ala D-ala ligase N-terminal domain protein [Streptococcus
           vestibularis F0396]
 gi|311101429|gb|EFQ59634.1| D-ala D-ala ligase N-terminal domain protein [Streptococcus
           vestibularis F0396]
          Length = 348

 Score =  124 bits (311), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 89/329 (27%), Positives = 160/329 (48%), Gaps = 41/329 (12%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH-------------- 48
           +L GG S+EREVS+ S ++   A++ + F+V    + +S   +                 
Sbjct: 8   LLYGGRSAEREVSVLSAESVMRAVDYSAFEVKTYFITQSGDFIKTQEFTETPSDDEKLMT 67

Query: 49  ---------LKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
                    +KP        + F VLHG  GEDG +Q  LE L++PY  + +L+S+++MD
Sbjct: 68  NDTVVASQAIKPSDIYEEGAVVFPVLHGPMGEDGSIQGFLETLKLPYVGTNVLSSSVAMD 127

Query: 93  KMRSKQVVSSCGVP-VCPSILVNRFTMDSQ-----HLISPPYVIKPLKGGSSLGIIVIKK 146
           K+ +K ++   GVP V  ++ +    +++        ++ P  +KP   GSS+GI   K 
Sbjct: 128 KIMTKHILEVAGVPQVAYTVYIEGEDLEAAVAETLEKLTFPVFVKPANMGSSVGI--SKA 185

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD--FYSYEL 204
           +    L      +  +  ++LIEQ V   E+  G++G+ ++  T+      D  FY Y+ 
Sbjct: 186 ENEAELHAAIDLALKYDSRILIEQGVVAREIEVGILGNTTVKTTDPGEVVKDVAFYDYQA 245

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           KY     T  +PA +P ++  +++  A  A +A+G  G++R DF        ++  E+N 
Sbjct: 246 KYIDNKITMDIPAHVPAEVMTQMRAYAAKAFRALGGCGLARCDFFLTE-DGAIYLNELNT 304

Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            PG T  S++P +    G S+ +L+  +V
Sbjct: 305 MPGFTQWSMYPLLWENMGLSYSDLIKELV 333


>gi|227529650|ref|ZP_03959699.1| D-alanine--D-alanine ligase [Lactobacillus vaginalis ATCC 49540]
 gi|227350440|gb|EEJ40731.1| D-alanine--D-alanine ligase [Lactobacillus vaginalis ATCC 49540]
          Length = 426

 Score =  124 bits (311), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 100/344 (29%), Positives = 169/344 (49%), Gaps = 54/344 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI---------------------DVD 39
           +A+L GG SSE +VS  S      AL+   + VS                       D D
Sbjct: 55  IALLFGGNSSEHDVSKRSAHNIYDALDKDKYNVSLFMFTKDGILLGNSASQRIFNGDDED 114

Query: 40  RSVG---------------LVLAHLKP-DLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
           + V                + L  +K  DL F V+HGN GEDG VQ + +LL+ PY  S 
Sbjct: 115 QVVQEEYQKMNLNQPLAPIMALNEMKAVDLFFPVIHGNLGEDGTVQGLFKLLKKPYVGSN 174

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFTM---DSQHLISPPYVIKPLKGGS 137
           I ASA++ DK  +K++++  G+   P ++V   NR        +  I     +KP K GS
Sbjct: 175 IAASAMAFDKDLTKKILTEAGIRNTPYVVVTPENRADYPWAKVEEKIGDLAFVKPAKQGS 234

Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGD---ASLDVTEIA 193
           S+GI  +   +     L  +  +++  ++L+EQ +D   E+   ++G+    +  +  + 
Sbjct: 235 SVGIHKVTNAEEYEKALDDAFKYDY--KILVEQGIDHPQEVEISILGNEHPVASKLGAVR 292

Query: 194 VPKSD-FYSYELKYSSLNS-THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
           VP+ D FY+YE K+   +     LP K+P  + +E+  +A  A++ +G +G++R DFL D
Sbjct: 293 VPEGDSFYNYENKFVDASGVVFELPVKLPEYLTEEITSMALKAYKVLGMKGMARIDFLVD 352

Query: 252 PLSRKVFWL-EINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             S  V +L E N  PG T +S++P+M   +G  + +L+  +++
Sbjct: 353 --SNNVPYLGEPNTLPGFTNISLYPQMWEVSGIGYSDLIDRLIQ 394


>gi|239917398|ref|YP_002956956.1| D-alanine--D-alanine ligase [Micrococcus luteus NCTC 2665]
 gi|239838605|gb|ACS30402.1| D-alanine--D-alanine ligase [Micrococcus luteus NCTC 2665]
          Length = 379

 Score =  124 bits (311), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 76/257 (29%), Positives = 130/257 (50%), Gaps = 22/257 (8%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-- 109
           D+ F +LHG +GEDG +Q + E L +PY   G+LASA+ MDK   K    + G+ V P  
Sbjct: 111 DVVFPLLHGPWGEDGTLQGMFESLGLPYVGCGVLASAVGMDKHFMKVAFQAAGLQVGPWE 170

Query: 110 SILVNRFTMDSQHLISP------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
           +I    +  D +  ++       P  +KP + GSS GI  + +   +   + ++  ++  
Sbjct: 171 TITARDWARDPEAALARAGALAYPLFVKPARAGSSFGITRVTEPAGLRAAVEEARRFD-- 228

Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVP----------KSDFYSYELKYSSLNSTH 213
            ++++E  + G E+ C V+          ++P          ++ FY +E KY    +T 
Sbjct: 229 PKVVVEAGIVGREIECAVLDGHGAAAPRASLPGEIVVAHDEGETQFYDFESKYQDTGTTQ 288

Query: 214 V-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
           +  PA++P +  + ++ LA  A +A+   G+ R DF F P  R V   EIN  PG TP+S
Sbjct: 289 LSCPAELPEEEIERLRALAIRAFEAVDGSGLGRCDFFFTPDGRWVV-NEINTMPGFTPIS 347

Query: 273 IFPEMAAYAGYSFRELL 289
           ++P M    G S+ +L+
Sbjct: 348 MYPAMWERTGLSYDDLI 364


>gi|281414117|ref|ZP_06245859.1| D-alanine--D-alanine ligase [Micrococcus luteus NCTC 2665]
          Length = 379

 Score =  124 bits (310), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 76/257 (29%), Positives = 130/257 (50%), Gaps = 22/257 (8%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-- 109
           D+ F +LHG +GEDG +Q + E L +PY   G+LASA+ MDK   K    + G+ V P  
Sbjct: 111 DVVFPLLHGPWGEDGTLQGMFESLGLPYVGCGVLASAVGMDKHFMKVAFQATGLQVGPWE 170

Query: 110 SILVNRFTMDSQHLISP------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
           +I    +  D +  ++       P  +KP + GSS GI  + +   +   + ++  ++  
Sbjct: 171 TITARDWARDPEAALARAGALAYPLFVKPARAGSSFGITRVTEPAGLRAAVEEARRFD-- 228

Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVP----------KSDFYSYELKYSSLNSTH 213
            ++++E  + G E+ C V+          ++P          ++ FY +E KY    +T 
Sbjct: 229 PKVVVEAGIVGREIECAVLDGHGAAAPRASLPGEIVVAHDEGETQFYDFESKYQDTGTTQ 288

Query: 214 V-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
           +  PA++P +  + ++ LA  A +A+   G+ R DF F P  R V   EIN  PG TP+S
Sbjct: 289 LSCPAELPEEEIERLRALAIRAFEAVDGSGLGRCDFFFTPDGRWVV-NEINTMPGFTPIS 347

Query: 273 IFPEMAAYAGYSFRELL 289
           ++P M    G S+ +L+
Sbjct: 348 MYPAMWERTGLSYDDLI 364


>gi|7110137|gb|AAF36803.1|AF155139_2 putative D-alanyl-D-alanine ligase VanE [Paenibacillus popilliae]
          Length = 343

 Score =  124 bits (310), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 89/331 (26%), Positives = 155/331 (46%), Gaps = 45/331 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSV------------------ 42
           +A+L GG S E +VS+ S K  A+ ++   ++   I + RS                   
Sbjct: 6   IAILFGGCSEEHDVSVKSAKEIANNIDTEKYEPIYIGITRSGVWKMCEKPCMDWDNENCR 65

Query: 43  -----------GLVLAHLKP------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
                      GL++   K       D  F+VLHG  GEDG +Q + EL  IPY    + 
Sbjct: 66  SAVLSPDKKMHGLLVMRNKGYQIQRIDAVFSVLHGKSGEDGAIQGLFELSSIPYVGCDVQ 125

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145
           +SA+ MDK  +  V  + G      +++N   +   + ++ P  +KP + GSS G+  + 
Sbjct: 126 SSAVCMDKSLTYIVAQNAGFGTPEFLILNHGDIPDSNTLTYPVFVKPARSGSSFGVNKVN 185

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS----LDVTEIAVPKSDFYS 201
            +    LD    ++  +  ++LIEQ V G+E+ C V+G+ +     +V +I++    F  
Sbjct: 186 NEDE--LDAAIETARQYDSKVLIEQAVPGLEVGCAVLGNGTDLIVGEVDQISLSHGIFRI 243

Query: 202 YEL---KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
           ++    +  S N+  ++PA +  +   ++Q  A   ++A+GC+G+SR D       R + 
Sbjct: 244 HQEDQPEKGSENAVVLVPANLSAEKRIKIQETAKAIYKALGCKGLSRVDMFLQENGR-II 302

Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
             E+N  PG T  S +P M A AG +   L+
Sbjct: 303 LNEVNTLPGFTAYSRYPRMMAAAGMTLSGLI 333


>gi|262384160|ref|ZP_06077296.1| D-alanyl-alanine synthetase A [Bacteroides sp. 2_1_33B]
 gi|262295058|gb|EEY82990.1| D-alanyl-alanine synthetase A [Bacteroides sp. 2_1_33B]
          Length = 330

 Score =  124 bits (310), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 86/325 (26%), Positives = 158/325 (48%), Gaps = 37/325 (11%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFK----------------------VSQIDV 38
           +A++ GG SSE  +SL S     S ++   +                       + + D 
Sbjct: 5   IAIVAGGDSSEIVISLKSADGIYSFIDKDKYNLYIAIVKRDEWAVILPSGEHTPIDKNDF 64

Query: 39  DRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQ 98
                 V  H   D A+  +HG  GEDG +Q   +++ +PY+  G+L SAL+ +K     
Sbjct: 65  SFKENGVTRHF--DFAYITIHGTPGEDGRLQGYFDMIGMPYSSCGMLVSALTFNKYVCNH 122

Query: 99  VVSSCGVPVCPSI-LVNRFTMDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDL 154
            +   GV +  SI L    T+  + +++    P  +KP  GGSS G+  +K+  +I   +
Sbjct: 123 YLKDFGVKIAASIHLFKGETITDEEVVTRLGLPIFVKPNDGGSSFGVTKVKELSAIQPAI 182

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCG---VMG-DASLDVTEIAVPKSDFYSYELKYSSLN 210
             + ++  G ++++E ++DG E+TCG   V G +    +TE+ V  ++F+ ++ KY+   
Sbjct: 183 --AKAFGEGREVILESFIDGTEVTCGCYKVEGKEVVFPLTEV-VTDNEFFDFDAKYNG-Q 238

Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270
              + PA+I  ++ + +QR     +  +G +G+ R D++  P   +   LEIN  PGMT 
Sbjct: 239 VDEITPARISTELTELIQRKTSRIYDILGAKGLIRVDYII-PADGEPVLLEINTTPGMTA 297

Query: 271 VSIFPEMAAYAGYSFRELLLWMVED 295
            S  P+    AG   ++++  ++ED
Sbjct: 298 TSFIPQQVRAAGLDIKDVMTDIIED 322


>gi|194468272|ref|ZP_03074258.1| D-alanine/D-alanine ligase [Lactobacillus reuteri 100-23]
 gi|194453125|gb|EDX42023.1| D-alanine/D-alanine ligase [Lactobacillus reuteri 100-23]
          Length = 378

 Score =  124 bits (310), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 100/345 (28%), Positives = 167/345 (48%), Gaps = 56/345 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           +A+L GG SSE +VS  S      AL+   + VS     +  G++L +            
Sbjct: 7   IALLFGGNSSEHDVSKRSAHNIYDALDKEKYDVSLFMFTKD-GILLGNEDSQKIFDGEPE 65

Query: 49  ----------------LKP----------DLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
                           L P          D  F V+HGN GEDG +Q + +LL  PY  S
Sbjct: 66  DQVVAEAYQKMNMSSPLAPIMALNEQKEIDFFFPVIHGNLGEDGTIQGLFKLLNKPYVGS 125

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFTMD---SQHLISPPYVIKPLKGG 136
            I ASA+S DK  +K+++S  G+   P ++V   NR        +  +     +KP K G
Sbjct: 126 NIAASAMSFDKDLTKKIISQAGIRNTPYVVVTPENRADYSWGRIEEKLGNLTFVKPAKQG 185

Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDA---SLDVTEI 192
           SS+GI  +   +     L  +  +++  ++L+EQ + +  E+   ++G+    +  +  +
Sbjct: 186 SSVGIHRVTNAEEYEKALDDAFKYDY--KILVEQGIANPQEIEISILGNEHPIASKLGAV 243

Query: 193 AVPKSD-FYSYELKYSSLNS-THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
            VPK D FY YE K+   +     LP K+P  +  E+  +A  A++A+G +G++R DFL 
Sbjct: 244 RVPKDDPFYDYENKFVDASGVVFELPVKLPQYLVDEITDMALKAYKALGMKGMARIDFLV 303

Query: 251 DPLSRKVFWL-EINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           D  S  V +L E N  PG T +S++P+M   +G S+ +L+  +++
Sbjct: 304 D--SNNVPYLGEPNTLPGFTNISLYPQMWEVSGISYSDLIDRLIQ 346


>gi|315652856|ref|ZP_07905829.1| D-alanine-D-alanine ligase [Eubacterium saburreum DSM 3986]
 gi|315484887|gb|EFU75296.1| D-alanine-D-alanine ligase [Eubacterium saburreum DSM 3986]
          Length = 349

 Score =  124 bits (310), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 95/300 (31%), Positives = 149/300 (49%), Gaps = 22/300 (7%)

Query: 8   ISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGL 67
           ISS  + S  + K  A  L DA  K   ++     G     +  D+ F VLHG FGEDG 
Sbjct: 53  ISSMEDGSWLNSKTSAYILPDATKKCIMVET----GGEYKEVHVDVVFPVLHGLFGEDGT 108

Query: 68  VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------- 120
           VQ +LEL +IPY   G+LASA+ MDK+ +K VV   G+       V  + +         
Sbjct: 109 VQGLLELAKIPYVGCGVLASAVGMDKLYTKLVVDKLGIRQAAYEAVLDYEVRENLSDKIE 168

Query: 121 --QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
             +     P  IKP   GSS G+      + +   +L+  +  H  ++L+E+ + G E+ 
Sbjct: 169 KIEGRFDYPVFIKPSNAGSSRGVSKALDREELKKGILE--ALKHDRKVLVEETIVGHEVE 226

Query: 179 CGVMGDASLDVTEIAVPK----SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
           CGV+G    DVT   V +    + FY Y+ KY  L+S  +L +K+P  + +++   A   
Sbjct: 227 CGVLGRPG-DVTASGVGEIKSAATFYDYDAKY-KLDSLTLLDSKLPDGVREKLPEYAKKI 284

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             A+   G+SR DF F     ++ + EIN  PG T +S++P +   AG   ++L+  ++E
Sbjct: 285 FTALDGFGLSRVDF-FAREDGEIVFNEINTMPGFTAISMYPMLFEAAGIGKKDLIDRLIE 343


>gi|297623804|ref|YP_003705238.1| D-alanine/D-alanine ligase [Truepera radiovictrix DSM 17093]
 gi|297164984|gb|ADI14695.1| D-alanine/D-alanine ligase [Truepera radiovictrix DSM 17093]
          Length = 351

 Score =  124 bits (310), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 101/335 (30%), Positives = 166/335 (49%), Gaps = 51/335 (15%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR---------------------- 40
           +L GG S E EVSL+S ++  +A   A F V+ + + R                      
Sbjct: 17  LLCGGRSDEHEVSLASARSVLAAAGSA-FAVTPLVIGRDGRLLPEAASRRVLCTPVPDTP 75

Query: 41  ------SVGLVLAHLKP---DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSM 91
                 +  L L+ L+P   D+ F +LHG FGEDG VQ +L+LL +P+  S +L SA+ M
Sbjct: 76  PDALTATGALELSALEPGAFDVVFPLLHGPFGEDGSVQGLLKLLGLPFVGSDVLGSAVGM 135

Query: 92  DKMRSKQVVSSCGVPVCPSILVNR--FTMDSQHLISP------PYVIKPLKGGSSLGIIV 143
           DK   K V ++ G+P  P  L+ R  +  D + +++       P  +KP   GSS+GI  
Sbjct: 136 DKGMMKAVFAAHGLPQVPYRLMTRSAWRRDPEGVLASLMDFGLPVFVKPANLGSSVGISR 195

Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQ-YVDGIELTCGVMGD----ASLDVTEIAVPKSD 198
               + +   L  ++ ++   ++L+E+      EL  GV+G+    AS+ V EI   +S 
Sbjct: 196 ADDPEGLREALETAARYDR--RVLVERGLARARELEVGVLGNDAPRASV-VGEIRY-ESL 251

Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
           FY Y  KY+   +  ++PA IP ++    Q LA  A +A+   G++R DF       +++
Sbjct: 252 FYDYSTKYTEGEAEPLIPAPIPPELAARCQALALEAFRAVDAAGLARVDFFL--AGGELY 309

Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
             EIN  PG T  S+FP++   +G  +  L+  ++
Sbjct: 310 LNEINTMPGFTRTSMFPKLWEASGVPYDALITQLI 344


>gi|124023693|ref|YP_001018000.1| D-alanyl-alanine synthetase A [Prochlorococcus marinus str. MIT
           9303]
 gi|166198499|sp|A2CB75|DDL_PROM3 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|123963979|gb|ABM78735.1| D-alanine--D-alanine ligase [Prochlorococcus marinus str. MIT 9303]
          Length = 353

 Score =  124 bits (310), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 79/253 (31%), Positives = 133/253 (52%), Gaps = 17/253 (6%)

Query: 55  FNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
           + VLHG  GEDG VQ +  L+  P+  SG+L SALSMDK+  K   ++ G+P  P   V+
Sbjct: 99  YPVLHGPNGEDGTVQGLFTLMGQPFVGSGVLGSALSMDKLAMKAAFAAAGLPQVPYFAVD 158

Query: 115 R---FTMDSQHLISP--------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
                  +S+  ++         P  +KP   GSS+GI   +    + + L +++S +  
Sbjct: 159 AADLLDTESRQGVAKNLEAKLKYPCFVKPANLGSSVGISKAQNRNELLIGLDKAASLDR- 217

Query: 164 DQLLIEQYVDGIELTCGVMGDASLD---VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
            ++++EQ V   EL C V+G   L    V EI    +D+Y Y+ KYS   S  ++PA +P
Sbjct: 218 -RIVVEQGVSARELECAVLGKRELQTSVVGEICF-DADWYDYDTKYSENCSHTLIPAPLP 275

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280
             +  +++ LA  A + +   G++R DF ++    +++  EIN  PG T  S++P +   
Sbjct: 276 EGVEAQIRTLALQACRCVAAHGMARVDFFYNAARNEIWLNEINTLPGFTSQSMYPMLWEA 335

Query: 281 AGYSFRELLLWMV 293
           +G +  EL+  +V
Sbjct: 336 SGVTLEELVSQLV 348


>gi|220912996|ref|YP_002488305.1| D-alanyl-alanine synthetase A [Arthrobacter chlorophenolicus A6]
 gi|254767718|sp|B8HAC4|DDL_ARTCA RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|219859874|gb|ACL40216.1| D-alanine/D-alanine ligase [Arthrobacter chlorophenolicus A6]
          Length = 382

 Score =  124 bits (310), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 87/255 (34%), Positives = 130/255 (50%), Gaps = 20/255 (7%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+ F +LHG FGEDG +Q +LEL +  Y  +G+LASA+ MDK   K V  S G+ V P +
Sbjct: 116 DVVFPLLHGPFGEDGTIQGLLELSDTRYVGAGVLASAVGMDKHFMKVVFESAGLHVGPYV 175

Query: 112 LVN--RFTMDSQHL------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
            V   ++  D + +      +  P  +KP + GSS+GI   K D    LD     +  H 
Sbjct: 176 AVTDRQWQKDPEAVRKQVDRLGFPVFVKPARAGSSMGI--SKVDSLEGLDAAIEEARRHD 233

Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKS--------DFYSYELKYSSLNSTHV- 214
            +L+IE  + G E+ C V+     D    ++P          +FY +  KY   ++  + 
Sbjct: 234 LKLVIEAGIVGREIECAVLEGRGTDAPRTSLPGEISVAGGGHEFYDFNAKYVEDDAASLS 293

Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274
            PA IP +    V+ LA  A  A+G  G+SR DF + P    +   EIN  PG TP S++
Sbjct: 294 CPADIPDEAIARVRELAAAAFDAVGAEGLSRVDFFYTP-DGDLIINEINTMPGFTPKSMY 352

Query: 275 PEMAAYAGYSFRELL 289
           P+M A +G  + EL+
Sbjct: 353 PQMWAKSGLGYAELI 367


>gi|329769753|ref|ZP_08261154.1| hypothetical protein HMPREF0433_00918 [Gemella sanguinis M325]
 gi|328838115|gb|EGF87733.1| hypothetical protein HMPREF0433_00918 [Gemella sanguinis M325]
          Length = 355

 Score =  124 bits (310), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 85/292 (29%), Positives = 148/292 (50%), Gaps = 18/292 (6%)

Query: 13  EVSLSSGKACASALEDAG-FKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAI 71
           E + + G+   S ++D    + +  + D S  L     K DL F VLHG  GEDG +Q  
Sbjct: 46  EGNWAKGEQIKSEIKDQNELRFTNFNSDISSLLFEDGRKFDLVFPVLHGPNGEDGTIQGF 105

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQHLISP--- 126
           LE+++I Y  + +L+SA  MDK+  KQ+ ++  +P  P      +T   + + +I     
Sbjct: 106 LEIMDIAYVGNNVLSSAAGMDKVVMKQLFAAYDLPQLPYTHFIEYTWKKNKEAVIKEVND 165

Query: 127 ----PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ-YVDGIELTCGV 181
               P  +KP   GSS+GI     +  +   + ++  ++   +++IEQ  V   E+   V
Sbjct: 166 NLKYPVFVKPANLGSSVGISRCNDEAELVKGIEEALKFDK--RIVIEQGAVGAKEIEVAV 223

Query: 182 MGDASLDVTE----IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           +G   +  T+    + +  ++FY YE KY+   S   +PA I  ++Y E +++A  A +A
Sbjct: 224 LGYNEVKTTDPGEIVNISTTEFYDYETKYTDGQSRMDIPAPIDPNLYPEFRKMAATAFRA 283

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           I   G+ R+DF +     ++F  E+N  PG TP S+FP + A    S+ E++
Sbjct: 284 ISGSGLVRADFFYTK-EGEIFINEVNTMPGFTPFSMFPSLWANMNVSYPEVI 334


>gi|109240375|dbj|BAE96111.1| D-Ala:D-Ala ligase [Enterococcus raffinosus]
          Length = 359

 Score =  124 bits (310), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 76/254 (29%), Positives = 132/254 (51%), Gaps = 16/254 (6%)

Query: 53  LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--S 110
           + F VLHG  GEDG +Q  LE L++PY  +G++ SA +MDK+ +K ++ + G+P  P   
Sbjct: 97  IVFPVLHGPNGEDGTIQGFLETLDMPYVGAGVMTSACAMDKIMTKYILQAAGIPQVPYVP 156

Query: 111 ILVNRFTMDSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
           +L N++  + + +          P  IKP   GSS+GI   +  + +   L    ++ + 
Sbjct: 157 VLKNQWKENPKQIFDKCEGTLLYPMFIKPANMGSSVGITRAENREELQNAL--QEAYRYD 214

Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
            + L+EQ +D  E+   V+G+  +  T   EI V +  FY Y  KY        +PA IP
Sbjct: 215 SRALVEQGIDAREIEVAVLGNDDVRTTLPGEI-VKEEAFYDYNAKYIDNTIQMAIPANIP 273

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280
            ++ ++ +  A  A+  +G  G+SR DF F     ++F  E+N  PG T  S++P +   
Sbjct: 274 EEVMQKARDYAKSAYTMLGGSGLSRIDF-FLTNKNELFLNELNTMPGFTEFSMYPLLWEN 332

Query: 281 AGYSFRELLLWMVE 294
            G  + +L+  +++
Sbjct: 333 MGLKYGDLIEELIQ 346


>gi|326202145|ref|ZP_08192015.1| D-alanine/D-alanine ligase [Clostridium papyrosolvens DSM 2782]
 gi|325987940|gb|EGD48766.1| D-alanine/D-alanine ligase [Clostridium papyrosolvens DSM 2782]
          Length = 349

 Score =  123 bits (309), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 78/253 (30%), Positives = 132/253 (52%), Gaps = 12/253 (4%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D AF VLHG  GEDG VQ +L+L  IP+   G+L+SA+ MDK  + ++  S GV V  SI
Sbjct: 98  DAAFPVLHGRNGEDGTVQGMLKLAGIPFVGCGVLSSAMCMDKDIAHRIAQSSGVCVPKSI 157

Query: 112 LVNRF-----TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQL 166
             ++       ++    +  P  +KP + GSS GI  +     +   ++  +++ +  ++
Sbjct: 158 SADKAMLLKDILNKAETLRYPVFVKPARAGSSFGISRVIDRAELEKAII--NAFEYDSKI 215

Query: 167 LIEQYVDGIELTCGVMGDASL---DVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           +IE+ +DG E+ C ++G+ +L   +V EI + +S  + Y  KY+   S   +PA+I    
Sbjct: 216 VIEENIDGFEVGCAILGNDNLVIGEVDEIEL-QSGIFDYNEKYTLKTSKIHMPARIDTVT 274

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283
            + ++  A + + A+ C G +R D    P    VF  E+N  PG T  S +P M    G 
Sbjct: 275 AERIKDTARILYNALCCTGFARVDMFLTPKGEIVFN-EVNTIPGFTAHSRYPNMLRGVGL 333

Query: 284 SFRELLLWMVEDA 296
           SF  ++  ++  A
Sbjct: 334 SFASIVERLIRMA 346


>gi|298376940|ref|ZP_06986894.1| D-alanine--D-alanine ligase [Bacteroides sp. 3_1_19]
 gi|301311072|ref|ZP_07217001.1| D-alanine--D-alanine ligase [Bacteroides sp. 20_3]
 gi|298265924|gb|EFI07583.1| D-alanine--D-alanine ligase [Bacteroides sp. 3_1_19]
 gi|300831135|gb|EFK61776.1| D-alanine--D-alanine ligase [Bacteroides sp. 20_3]
          Length = 330

 Score =  123 bits (309), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 86/325 (26%), Positives = 158/325 (48%), Gaps = 37/325 (11%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFK----------------------VSQIDV 38
           +A++ GG SSE  +SL S     S ++   +                       + + D 
Sbjct: 5   IAIVAGGDSSEIVISLKSADGIYSFIDKDKYNLYIAIVKRDEWAVILPSGEHTPIDKNDF 64

Query: 39  DRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQ 98
                 V  H   D A+  +HG  GEDG +Q   +++ +PY+  G+L SAL+ +K     
Sbjct: 65  SFKENGVTRHF--DFAYITIHGTPGEDGRLQGYFDMIGMPYSSCGMLVSALTFNKYVCNH 122

Query: 99  VVSSCGVPVCPSI-LVNRFTMDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDL 154
            +   GV +  SI L    T+  + +++    P  +KP  GGSS G+  +K+  +I   +
Sbjct: 123 YLKDFGVKIAASIHLFKGETITDEEVVTRLGLPIFVKPNDGGSSFGVTKVKELSAIQPAI 182

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCG---VMG-DASLDVTEIAVPKSDFYSYELKYSSLN 210
             + ++  G ++++E ++DG E+TCG   V G +    +TE+ V  ++F+ ++ KY+   
Sbjct: 183 --AKAFGEGREVILESFIDGTEVTCGCYKVEGKEVVFPLTEV-VTDNEFFDFDAKYNG-Q 238

Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270
              + PA+I  ++ + +QR     +  +G +G+ R D++  P   +   LEIN  PGMT 
Sbjct: 239 VDEITPARISAELTELIQRKTSRIYDILGAKGLIRVDYII-PADGEPVLLEINTTPGMTA 297

Query: 271 VSIFPEMAAYAGYSFRELLLWMVED 295
            S  P+    AG   ++++  ++ED
Sbjct: 298 TSFIPQQVRAAGLDIKDVMTDIIED 322


>gi|159040582|ref|YP_001539835.1| D-alanine--D-alanine ligase [Salinispora arenicola CNS-205]
 gi|157919417|gb|ABW00845.1| D-alanine--D-alanine ligase [Salinispora arenicola CNS-205]
          Length = 327

 Score =  123 bits (309), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 95/311 (30%), Positives = 156/311 (50%), Gaps = 24/311 (7%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62
           VL GG+S ER+VSL SG+    AL   G +    D D ++   L    PD     LHG  
Sbjct: 19  VLAGGLSYERDVSLRSGRRVLDALRAVGVEAELRDADVALLPSLVADPPDAVVIALHGAT 78

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFT--- 117
           GEDG ++ +L+L  +PY      +S L+ DK  +K V+   G+P    + +  +RF+   
Sbjct: 79  GEDGSLRGVLDLCNVPYVGCDARSSRLAWDKPSAKAVLREAGIPTPDWVALPHDRFSELG 138

Query: 118 --------MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
                   +D   L   P ++KP +GGS LG  V++   ++P  ++   +++     L+E
Sbjct: 139 AVAVLDRIVDRLGL---PLMVKPAQGGSGLGAAVVRDGPALPAAMVGCFAYDS--TALVE 193

Query: 170 QYVDGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
           +Y+ G ++   V+    G  +L   EI VP++  Y Y  +Y++  +T   PA++  ++ +
Sbjct: 194 RYLPGTDVAVSVIDLGEGPQALPAVEI-VPRNGVYDYAARYTAGRTTWHTPARLDTEVAE 252

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285
            V  +A  AH A+G R +SR D + D    +   L +NV PGMT  S+ P  A  A   F
Sbjct: 253 AVATVAVAAHTALGLRDLSRVDLIVD-ADHQPHVLGVNVAPGMTETSLLPLAAQAASLDF 311

Query: 286 RELLLWMVEDA 296
             ++  +V  A
Sbjct: 312 GRMIGTLVSRA 322


>gi|315223279|ref|ZP_07865140.1| D-ala D-ala ligase [Streptococcus anginosus F0211]
 gi|315187711|gb|EFU21465.1| D-ala D-ala ligase [Streptococcus anginosus F0211]
          Length = 348

 Score =  123 bits (309), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 96/332 (28%), Positives = 162/332 (48%), Gaps = 47/332 (14%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH-------------- 48
           +L GG S+ER+VS+ S ++   A++   F V    + ++   +                 
Sbjct: 8   LLYGGRSAERKVSVLSAESVMRAIDYDKFFVKTYFITQAGDFIKTQEFSSKPTDDEKLMT 67

Query: 49  ---------LKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
                    +KP        + F VLHG  GEDG +Q  LE+L++PY    IL+S+++MD
Sbjct: 68  NDTVVASQKIKPSDIYEEGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNILSSSVAMD 127

Query: 93  KMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIKPLKGGSSLGIIVIKK 146
           K+ +K+V++S G+P  P + V       + +      ++ P   KP   GSS+GI     
Sbjct: 128 KITTKRVLASAGIPQVPYVAVIEGENIDEKIAAVEANLTYPVFTKPSNMGSSVGI----- 182

Query: 147 DQSIPLDLLQSS---SWNHGDQLLIEQYVDGIELTCGVMG--DASLDVTEIAVPKSDFYS 201
            +S   D L+S+   ++ +  ++LIEQ V+  E+  G++G  +A   +    V    FY 
Sbjct: 183 SKSENQDELRSALKLAFKYDSRVLIEQGVNAREIEVGLLGNEEAQSSLPGEVVKDVAFYD 242

Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
           YE KY     T  +PAK+  D+   +++ A  A  AIG  G+SR DF +     ++   E
Sbjct: 243 YEAKYIDNKITMDIPAKLSEDVIATMRQYAEKAFHAIGGVGLSRCDFFYTD-KGEILLNE 301

Query: 262 INVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +N  PG T  S++P +    G S+ +L+  +V
Sbjct: 302 LNTMPGFTQWSMYPLLWENMGISYTDLIEKLV 333


>gi|183599132|ref|ZP_02960625.1| hypothetical protein PROSTU_02586 [Providencia stuartii ATCC 25827]
 gi|188021357|gb|EDU59397.1| hypothetical protein PROSTU_02586 [Providencia stuartii ATCC 25827]
          Length = 367

 Score =  123 bits (309), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 95/347 (27%), Positives = 165/347 (47%), Gaps = 57/347 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD--------------------- 39
           + V+ GG S+E EVSL S K   + L+   F V  I ++                     
Sbjct: 6   VGVIFGGKSTEHEVSLQSAKNIINGLDRDRFDVCLIGINKQGHWHEYDEADFLIHANDPA 65

Query: 40  --------RSVGLV----------LAHLKP----DLAFNVLHGNFGEDGLVQAILELLEI 77
                   RS+ ++          L   +P    D+ F ++HGN GEDG +Q +L +  +
Sbjct: 66  RIALSTPKRSIAIIPGKTTQQFISLEDAQPLPQIDVIFPIVHGNLGEDGSLQGLLRMANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFTMDSQHLISP---PYVIK 131
           P+   G+L S+  MDK  +K+++   G+ V P I +   +R   + + ++     P  IK
Sbjct: 126 PFVGPGVLGSSACMDKDITKRLLRDAGLHVAPFITLTASDRTEANYEAVVKQLGLPLFIK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA---SLD 188
           P   GSS+GI  +  +      L    ++    ++LIE  V G E+ C V+G+    +  
Sbjct: 186 PANQGSSVGISKVTNESEFKAAL--DFAFLFDMKVLIESAVKGREIECAVLGNEQPLASP 243

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
             EI +  S FY+Y  KY   N   V+ PA + +++  +++ +A  A++A+ C G+SR D
Sbjct: 244 CGEIVLHDS-FYAYHTKYIDENGASVVAPADLDVEVSDKIREIALQAYRALNCSGMSRVD 302

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            +F      V   EIN  PG T +S++P++    G +++ L+  ++E
Sbjct: 303 -VFLTEDNHVIINEINTLPGFTNISMYPKLWQQGGMTYQALISRLIE 348


>gi|254967090|gb|ACT97587.1| putative D-alanine-D-alanine ligase [uncultured organism]
 gi|254967092|gb|ACT97588.1| putative D-alanine-D-alanine ligase [uncultured organism]
          Length = 372

 Score =  123 bits (309), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 88/265 (33%), Positives = 132/265 (49%), Gaps = 21/265 (7%)

Query: 43  GLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS 102
           G+V      D+ F +LHG FGEDG VQ +LE+ ++ Y   G+ ASA+ MDK   K    S
Sbjct: 96  GIVTRTAPVDVVFPLLHGPFGEDGTVQGLLEMADLHYVGCGVTASAVGMDKHFMKVAFES 155

Query: 103 CGVPVCP-SILVNR--FTMDSQHLISP------PYVIKPLKGGSSLGIIVIKKDQSIPLD 153
            G+ V P  ++ NR     D + ++        P  +KP + GSS GI   K D    L 
Sbjct: 156 AGLEVGPYEVVTNREWEHEDREQILERVLKLGFPLFVKPTRAGSSFGI--TKVDSVEELV 213

Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV------TEIAVPKSD--FYSYELK 205
                +  H  +++IE  + G E+ C V+     ++       EI V   D  FY +E K
Sbjct: 214 PAIEEARRHDPKIIIEAGIVGREIECAVLDGHHGEMPRASYPGEIEVVDQDHGFYDFEAK 273

Query: 206 YSSLNST-HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           Y S +S   V PA +P D+ + ++ LA  A  A+   G+SR+DF +    R V   E+N 
Sbjct: 274 YVSESSAVTVCPANLPQDVQERLRELAVKAFLALDGEGLSRADFFYTEDGRLVIN-EVNT 332

Query: 265 QPGMTPVSIFPEMAAYAGYSFRELL 289
            PG TP+S++  M    G S+ +L+
Sbjct: 333 MPGFTPISMYKTMWENTGISYTDLI 357


>gi|319760597|ref|YP_004124535.1| D-alanine--D-alanine ligase family protein [Candidatus Blochmannia
           vafer str. BVAF]
 gi|318039311|gb|ADV33861.1| D-alanine--D-alanine ligase family protein [Candidatus Blochmannia
           vafer str. BVAF]
          Length = 376

 Score =  123 bits (309), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 76/250 (30%), Positives = 134/250 (53%), Gaps = 15/250 (6%)

Query: 47  AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP 106
           A LK D+ F ++HG+FGEDG +Q ++ ++ +PY  S IL S++ MDK  +K+++   G+P
Sbjct: 97  ALLKIDVIFPIIHGSFGEDGSLQGLIRIMNLPYVGSSILGSSICMDKTITKRLLRDSGLP 156

Query: 107 VCPSILVNRFTMDSQHLIS------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160
           V      + +   +   +S       P+ IKP+  GSS+G+  +         L    ++
Sbjct: 157 VASFKTFSHYERSNITFVSFYNMFGLPFFIKPVNQGSSIGVSKVTNQNVFNKAL--DVAF 214

Query: 161 NHGDQLLIEQYVDGIELTCGVMGD---ASLDVTEIAVPKSD---FYSYELKYSSLNSTHV 214
            +GD++++E  + G EL C V+G+    S    EI +  ++   FY+Y  KY S  +  +
Sbjct: 215 AYGDKIMVEPCIVGRELECAVLGNDDPISSVCGEIVINSNNDNGFYTYYKKYISSTTEVI 274

Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274
           +PA I   I  +V+  +  A Q + C G++R D +F  L+ ++   E+N  PG T  S++
Sbjct: 275 IPALITNIISDKVRHYSICAFQTLSCSGMARID-MFLTLNNQIIINEVNTLPGFTSHSMY 333

Query: 275 PEMAAYAGYS 284
           P++    G S
Sbjct: 334 PKLWEATGIS 343


>gi|229074283|ref|ZP_04207327.1| D-alanine--D-alanine ligase [Bacillus cereus Rock4-18]
 gi|229094944|ref|ZP_04225947.1| D-alanine--D-alanine ligase [Bacillus cereus Rock3-29]
 gi|229113898|ref|ZP_04243331.1| D-alanine--D-alanine ligase [Bacillus cereus Rock1-3]
 gi|228669559|gb|EEL24968.1| D-alanine--D-alanine ligase [Bacillus cereus Rock1-3]
 gi|228688477|gb|EEL42352.1| D-alanine--D-alanine ligase [Bacillus cereus Rock3-29]
 gi|228708835|gb|EEL60964.1| D-alanine--D-alanine ligase [Bacillus cereus Rock4-18]
          Length = 361

 Score =  123 bits (309), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 75/249 (30%), Positives = 132/249 (53%), Gaps = 14/249 (5%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+ F +LHG  GEDG VQ +LEL+ IPY  +G+LAS+  MDK+  K + +  G+      
Sbjct: 95  DVIFPLLHGPNGEDGTVQGLLELMNIPYVGNGVLASSAGMDKVVMKNIFAEAGLKQAKYA 154

Query: 112 LVNRFTMDS---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
              R   +          +  +  P  +KP   GSS+GI   K  + +     ++  ++ 
Sbjct: 155 SFIRSAWEKNREEAYDKVEEKLGYPCFVKPANLGSSVGINKCKNREELESAFEEAFQFDR 214

Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVTEIA--VPKSDFYSYELKYSSLNSTHVLPAKIP 220
             ++++E+ + G E+  GV+G+     + +   VPK DFY Y+ KY   ++  ++PA++ 
Sbjct: 215 --KIIVEENIVGREVEVGVLGNDEPKCSVVGEIVPKKDFYDYKSKYIDGDTALIIPAEMT 272

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280
            +    ++R A +A Q++   G++R+DF F     +V+  E+N  PG TP S+FP +  +
Sbjct: 273 EEESNVIKRDAIVAFQSLDGAGLTRADF-FLTKDGEVYINEVNTMPGFTPFSMFPLLWQH 331

Query: 281 AGYSFRELL 289
            G  + EL+
Sbjct: 332 TGLPYPELI 340


>gi|33866175|ref|NP_897734.1| D-alanyl-alanine synthetase A [Synechococcus sp. WH 8102]
 gi|39930834|sp|Q7U5Q9|DDL_SYNPX RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|33639150|emb|CAE08156.1| D-alanine--D-alanine ligase [Synechococcus sp. WH 8102]
          Length = 353

 Score =  123 bits (309), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 96/346 (27%), Positives = 162/346 (46%), Gaps = 52/346 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASAL----EDAGFKVSQIDVDRS--------VGLVLAH 48
           + V+ GG S E +VS+ S +  A  L        ++V  + +DR          G VL+ 
Sbjct: 8   VGVVFGGCSGEHDVSIRSAQTVAKGLTLGANRERYRVVLVYIDRDGRWWGPDLAGKVLSS 67

Query: 49  LKP----DLA---------------------FNVLHGNFGEDGLVQAILELLEIPYTHSG 83
             P    DL                      + VLHG  GEDG +Q + EL++ PY  +G
Sbjct: 68  GCPPADSDLPQPLPAPGFRGLPAGTDVVAVWYPVLHGPNGEDGTIQGLFELMQQPYVGAG 127

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-----------QHLISPPYVIKP 132
           +L SA+SMDK   K  ++  G+   P +      +             +  +  P  IKP
Sbjct: 128 VLGSAVSMDKQAMKAALAGAGLAQVPYVCAQADELSDAARQEALLKRIESGLCYPCFIKP 187

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192
              GSS+GI   +  + +   L  +++ +   +L++EQ V   EL C V+G  +L  + +
Sbjct: 188 ANLGSSVGISKARNREELIHGLRLAATLDP--RLVVEQGVQARELECAVLGGTTLRASVV 245

Query: 193 AVPK--SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
              +  +D+Y YE KY+   ST ++PA +P  I + ++  +  A  A+G  G++R DF +
Sbjct: 246 GEVRFDADWYDYETKYTDGRSTTLIPAPLPDGIVEAIRSQSIQACAAVGVTGMARVDFFY 305

Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           D    +V+  EIN  PG T  S++P +   +G +  +L+  ++E A
Sbjct: 306 DDSRDRVWLNEINTLPGFTSQSMYPMLWEASGVTLEQLVHELLESA 351


>gi|254967100|gb|ACT97592.1| putative D-alanine-D-alanine ligase [uncultured organism]
          Length = 334

 Score =  123 bits (309), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 96/329 (29%), Positives = 153/329 (46%), Gaps = 39/329 (11%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---DRSVGLVLAHLKP------ 51
           +A++ GG SSE +VS+ S +   S  +   + V  +DV   D +V        P      
Sbjct: 8   IAIVCGGDSSEHDVSMRSAQGLYSFFDKERYNVYIVDVKGLDWNVHFEDGTTAPIDKNDF 67

Query: 52  -----------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
                      D A+  +HG  GE+G++Q   ELL IPY+ SG+L  A++ DK      +
Sbjct: 68  SFLVNGKLVVFDYAYITIHGTPGENGIMQGYFELLHIPYSTSGVLVEAMTFDKFVLNNYL 127

Query: 101 SSCGVPVCPSILVNRFTMDS------QHLISPPYVIKPLKGGSSLGIIVIKK-DQSIPLD 153
              GV V  S+L+ R   D          I  P  +KP   GSS GI  +K  DQ  P  
Sbjct: 128 RGFGVNVADSLLLRRGEEDKYSEAEIASRIGWPCFVKPAADGSSFGISKVKNADQLAPAL 187

Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV----TEIAVPKSDFYSYELKYSSL 209
            +   ++   D+++IE+Y+ G E++ G     +  V    TE+ V  ++F+ Y+ KY+  
Sbjct: 188 RV---AFMESDEVMIERYLKGTEISVGCYKTKNKSVVFPATEV-VTSNEFFDYDAKYNG- 242

Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF--DPLSRKVF-WLEINVQP 266
               + PA++  +  + V       +  + C GI R D++   D   R V   LEIN  P
Sbjct: 243 QVEEITPARLNPETAERVAEETSKIYDILHCNGIIRIDYIISQDQNGRDVINMLEINSTP 302

Query: 267 GMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           GMT  S  P+    AG   +++L  ++E+
Sbjct: 303 GMTATSFIPQQVRAAGLDIKDVLTDIIEN 331


>gi|317495356|ref|ZP_07953726.1| D-alanine-D-alanine ligase [Gemella moribillum M424]
 gi|316914778|gb|EFV36254.1| D-alanine-D-alanine ligase [Gemella moribillum M424]
          Length = 355

 Score =  123 bits (308), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 89/332 (26%), Positives = 154/332 (46%), Gaps = 46/332 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKV--------------------------- 33
           + ++ GG S+E  VSL + K+  +A+    + V                           
Sbjct: 6   IGIIYGGKSAEHSVSLLTAKSIINAINKEKYNVFPIFISLNGEWARGEKITSEIKDHKEL 65

Query: 34  --SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSM 91
             S  D D S  L   + K D+ F VLHG  GEDG +Q +LE+++I Y  + +L+SA  M
Sbjct: 66  IFSNFDNDISGLLFEDNHKFDIVFPVLHGPNGEDGTIQGLLEIMDIAYVGNNVLSSAAGM 125

Query: 92  DKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---------ISPPYVIKPLKGGSSLGII 142
           DK+  KQ+ ++  +P  P      +                +  P  +KP   GSS+GI 
Sbjct: 126 DKVIMKQLFAAYDLPQLPYTHFIEYNWKKNKNKIIKEINDNLKYPVFVKPANLGSSVGIS 185

Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQ-YVDGIELTCGVMGDASLDVTE----IAVPKS 197
               ++ +   + ++  ++   ++++EQ  V   E+   V+G   +  T+    + +  +
Sbjct: 186 RCNDEKQLIKGIEEALKFDK--KIVVEQGAVGAKEIEVAVLGYNEVRTTDPGEIVNISTT 243

Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
           +FY YE KY+   S   +PA I   +Y E + +A  A +AI   G+ R+DF +     K+
Sbjct: 244 EFYDYETKYTDGQSRMDIPAPIDTALYSEFREMAETAFRAISGSGLVRADFFYTK-EGKI 302

Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           F  E+N  PG TP S+FP + A    ++ E++
Sbjct: 303 FINEVNTMPGFTPFSMFPSLWANMNVTYPEII 334


>gi|315937072|gb|ADU56080.1| hypothetical protein CA878-2 [uncultured organism CA878]
          Length = 345

 Score =  123 bits (308), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 85/251 (33%), Positives = 134/251 (53%), Gaps = 14/251 (5%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS- 110
           D    +LHG  GEDG +Q ++E+  IPY    I +SAL MDK  +  V  S G+   P+ 
Sbjct: 91  DAVLPILHGKLGEDGAMQGLMEIAGIPYAGCDIQSSALCMDKSLTYIVARSAGI-ATPNF 149

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            I+     +D   L  P +V KP + GSS G+  + +++ +P  +  +  ++   ++LIE
Sbjct: 150 WIVTADDDIDPGQLTYPVFV-KPARSGSSFGVSKVSREEELPSAVKTAREYD--SKVLIE 206

Query: 170 QYVDGIELTCGVMG-DASL---DVTEIAVPKSDFYSYEL---KYSSLNSTHVLPAKIPLD 222
           + V   E+ C V+G DA L   +V  +A+    F  ++    +  S NST ++PA IP +
Sbjct: 207 EAVVASEIGCAVLGNDADLTTGEVDRVALSHGFFKIHQESNPEQGSENSTFIVPADIPDE 266

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAG 282
               VQ  A + ++A+GCRG++R D +F     +V   E+N  PGMT  S +P M A AG
Sbjct: 267 SRARVQETAKVIYRALGCRGLARVD-MFLKEDGQVVLNEVNTLPGMTSYSRYPRMMAAAG 325

Query: 283 YSFRELLLWMV 293
               E++  MV
Sbjct: 326 MPLGEVIDRMV 336


>gi|91977855|ref|YP_570514.1| D-alanine--D-alanine ligase [Rhodopseudomonas palustris BisB5]
 gi|91684311|gb|ABE40613.1| D-alanine--D-alanine ligase [Rhodopseudomonas palustris BisB5]
          Length = 329

 Score =  123 bits (308), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 97/324 (29%), Positives = 153/324 (47%), Gaps = 49/324 (15%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKV-SQIDVDRSVGL--VLAHLKP-DLAFNV- 57
           +L GG S ER VS++S +A  +AL DA     +  D+   V    +LAH +P + +F+  
Sbjct: 5   ILFGGTSKERLVSVASAQALHAALPDAELWFWNDDDLVHVVAADALLAHTRPFEESFHPA 64

Query: 58  ------------------------LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDK 93
                                   LHG   E+G +QA+ E+  +P+T SG  AS ++ DK
Sbjct: 65  GGGIGPLERALDRAATEQRLLVLGLHGGVAENGELQAMCEMRGVPFTGSGAAASHVAFDK 124

Query: 94  MRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPY---VIKPLKGGSSLGIIVIKKDQSI 150
           + +K+  +  G+     I     T+D        Y   + KP + GSS G+  I   Q  
Sbjct: 125 IAAKRFAAIAGIRAPAGI-----TLDHAERALATYGRLIAKPTRDGSSYGLFFIDAKQ-- 177

Query: 151 PLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA-----SLDVTEIAVPKSDFYSYELK 205
             DL+   +    +  LIE +V G+E TCGV+  A     +L   EI VP    + Y+ K
Sbjct: 178 --DLVAVRNAAKTEDYLIEPFVCGVEATCGVLEQADGALLALPPVEI-VPADGGFDYKAK 234

Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           Y + ++  + P +   ++   +   A  AH+ +GCRG SRSDF+    +    +LE N  
Sbjct: 235 YLAKSTQEICPGRFTPEVSAVIMDYAVKAHRVMGCRGYSRSDFIV--AADGPIFLETNTL 292

Query: 266 PGMTPVSIFPEMAAYAGYSFRELL 289
           PG+T  S++P+     G SF + L
Sbjct: 293 PGLTKASLYPKALKAQGISFDDFL 316


>gi|203287658|ref|YP_002222673.1| D-alanine--D-alanine ligase [Borrelia recurrentis A1]
 gi|226696385|sp|B5RR18|DDL_BORRA RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|201084878|gb|ACH94452.1| D-alanine--D-alanine ligase [Borrelia recurrentis A1]
          Length = 364

 Score =  123 bits (308), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 89/337 (26%), Positives = 166/337 (49%), Gaps = 50/337 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASAL-EDAGFKVSQIDVDRSVG-------------LVL 46
           + ++ GG+S E E+SL S     S+L +   + V  I VD+  G             L+ 
Sbjct: 5   LMLIFGGVSFEHEISLRSAYGIYSSLLKLDKYNVFSIFVDKVTGIWYLLDSVPSSAELIK 64

Query: 47  AH-------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87
            H                   L+ D+ F ++HG  GEDG +Q  +++++IP   +GIL S
Sbjct: 65  RHTTSIVNFIPGCGIFVNNKSLEIDVIFPIIHGRTGEDGAIQGFVKMMDIPCVGAGILGS 124

Query: 88  ALSMDKMRSKQVVSSCGVPVCPSI-------LVNR--FTMDSQHLISPPYVIKPLKGGSS 138
           A+S++K   K ++ S  +PV   I       ++N+     D  + ++ P ++KP   GSS
Sbjct: 125 AISINKYFCKVLLKSFNIPVVSFIGFKKDDYILNKEGIKEDINNKLNYPVIVKPSVLGSS 184

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVP 195
           +GI V      I   + ++  ++    +++E+++   E+ C V+G+  + +    EI V 
Sbjct: 185 IGINVAYNVSQIEKYIEEAFEYDL--TVVVEKFIKAREIECAVIGNDQIKIFTPGEIVVQ 242

Query: 196 KSDFYSYELKYSSLNSTHV---LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
              FY Y+ KYS++    +   +PA + +    +++  AFL ++ +  RG++R DFL   
Sbjct: 243 DFIFYDYDAKYSTVPGDSIVFNIPAHLDMKHLLDIKEYAFLTYKYLELRGMARIDFLISK 302

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
            +  ++  E+N  PG T +S+F +M  + G S+  L+
Sbjct: 303 DTNLLYVNEVNTIPGFTDISMFAKMCEHDGLSYESLV 339


>gi|116628273|ref|YP_820892.1| D-alanyl-alanine synthetase A [Streptococcus thermophilus LMD-9]
 gi|122267132|sp|Q03JC6|DDL_STRTD RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|116101550|gb|ABJ66696.1| D-alanine--D-alanine ligase [Streptococcus thermophilus LMD-9]
 gi|312278896|gb|ADQ63553.1| D-alanine-D-alanine ligase-like ATP-grasp enzyme [Streptococcus
           thermophilus ND03]
          Length = 348

 Score =  123 bits (308), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 89/331 (26%), Positives = 164/331 (49%), Gaps = 45/331 (13%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH-------------- 48
           +L GG S+EREVS+ S ++   A++   F+V    + +S   +                 
Sbjct: 8   LLYGGRSAEREVSVLSAESVMRAVDYNAFEVKTYFITQSGDFIKTQEFIETPGDDEKLMT 67

Query: 49  ---------LKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
                    +KP        + F VLHG  GEDG +Q  LE L++PY  + +L+S+++MD
Sbjct: 68  NDTVEASQAIKPSDIYEEDAVVFPVLHGPMGEDGSIQGFLETLKLPYVGTNVLSSSVAMD 127

Query: 93  KMRSKQVVSSCGVP-VCPSILVNRFTMDSQ-----HLISPPYVIKPLKGGSSLGIIVIKK 146
           K+ +K+++   GVP V  +  +    +++        ++ P  +KP   GSS+GI   + 
Sbjct: 128 KIMTKRILEVAGVPQVAYTGYIEGEDLEAAVAETLEKLTFPVFVKPANMGSSVGISKAEN 187

Query: 147 DQSI--PLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD--FYSY 202
           +  +   +DL    +  +  ++LIEQ V   E+  G++G+ ++  T+      D  FY Y
Sbjct: 188 ESELRSAIDL----ALKYDSRILIEQGVVAREIEVGILGNTTVKTTDPGEVVKDVAFYDY 243

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
           + KY     T  +PA++P+++  +++  A  A +A+G  G++R DF        ++  E+
Sbjct: 244 QAKYIDNKITMDIPARVPVEVMTQMRAYAAKAFRALGGCGLARCDFFLTE-DGAIYLNEL 302

Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           N  PG T  S++P +    G S+ +L+  +V
Sbjct: 303 NTMPGFTQWSMYPLLWENMGLSYSDLIKELV 333


>gi|296313256|gb|ACZ97544.2| D-alanine-D-alanine ligase [Lactobacillus reuteri]
          Length = 301

 Score =  123 bits (308), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 83/251 (33%), Positives = 137/251 (54%), Gaps = 17/251 (6%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D  F V+HGN GEDG +Q + +LL  PY  S I ASA++ DK  +K++++  G+   P +
Sbjct: 52  DFFFPVIHGNLGEDGTIQGLFKLLNKPYVGSNISASAMAFDKDLTKKIITQAGIRNTPYV 111

Query: 112 LV---NRFTMD---SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
           LV   NR        +  +     IKP K GSS+GI  +   +     L  +  +++  +
Sbjct: 112 LVTPENRADYSWGRIEEQLGNLTFIKPAKQGSSVGIHRVTNAEEYEAALNDAFKYDY--K 169

Query: 166 LLIEQYVDG-IELTCGVMGDA---SLDVTEIAVPKSD-FYSYELKYSSLNS-THVLPAKI 219
           +L+EQ +D   E+   ++G+    +  +  + VP+ D FY YE K+   +     LP K+
Sbjct: 170 VLVEQGIDRPQEVEISILGNEHPIASKLGAVRVPEDDLFYDYENKFVDASGVVFELPVKL 229

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL-EINVQPGMTPVSIFPEMA 278
           P  +  E+  +A  A++A+G +G++R DFL D  S  V +L E N  PG T +S++P+M 
Sbjct: 230 PQYLVDEITDMALKAYKALGMKGLARIDFLVD--SNNVPYLGEPNTLPGFTNISLYPQMW 287

Query: 279 AYAGYSFRELL 289
             +G S+ EL+
Sbjct: 288 EVSGISYSELI 298


>gi|194476569|ref|YP_002048748.1| D-alanine--D-alanine ligase [Paulinella chromatophora]
 gi|171191576|gb|ACB42538.1| D-alanine--D-alanine ligase [Paulinella chromatophora]
          Length = 355

 Score =  123 bits (308), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 77/251 (30%), Positives = 133/251 (52%), Gaps = 15/251 (5%)

Query: 58  LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---- 113
           LHG  GEDG +Q +  L++ P+T SG+L SA+SMDK   K   ++ G+P  P I +    
Sbjct: 106 LHGPNGEDGTIQGLFTLMQKPFTGSGVLGSAVSMDKQAMKACFTAVGLPQVPYICLDILE 165

Query: 114 -----NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168
                N+     +  +  P  +KP   GSSLGI      Q +   L  +S+++   +L++
Sbjct: 166 LERIPNKLVNRIEKSLGYPCFVKPANLGSSLGISKCNSRQELISGLKLASAYD--SRLVV 223

Query: 169 EQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
           E+ V   E+ C V+G + L  +   EI   ++++Y Y  KY+  +S  V+PA +  +  +
Sbjct: 224 ERAVIAREIECAVVGKSVLRASVLGEICF-ENEWYDYTTKYTKGSSYMVIPAHLSEETTR 282

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285
             + L+  A +A+G  GI+R DF +   +  ++  EIN  PG T  S++P +   +G + 
Sbjct: 283 RARELSLEACRAVGAYGIARVDFFYVESTNNLWVNEINTLPGFTEQSMYPMLWMSSGLTL 342

Query: 286 RELLLWMVEDA 296
            EL+  +++ A
Sbjct: 343 NELVHQLIKLA 353


>gi|317129522|ref|YP_004095804.1| D-alanine/D-alanine ligase [Bacillus cellulosilyticus DSM 2522]
 gi|315474470|gb|ADU31073.1| D-alanine/D-alanine ligase [Bacillus cellulosilyticus DSM 2522]
          Length = 371

 Score =  123 bits (308), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 97/351 (27%), Positives = 174/351 (49%), Gaps = 68/351 (19%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS------------------- 41
           + ++ GG SSE ++SL S K+   A++   +++  I +D++                   
Sbjct: 14  VGIIFGGKSSEHQISLQSAKSIIEAIDKNKYELVLIGIDKNGKWYLLDPNNYLRNMDNPK 73

Query: 42  ----------VGLVLAH-----LKPD--------LAFNVLHGNFGEDGLVQAILELLEIP 78
                     V +VL         PD        + F +LHG++GEDG +Q +L L+  P
Sbjct: 74  LIEMIPSDQRVNIVLGEHDCFFTTPDGRSLGNIDVIFPILHGSYGEDGSIQGLLRLMGKP 133

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI---------SPPYV 129
           +    +L SA+SMDK  SK+++S  G+ +        +T D +  I           P  
Sbjct: 134 FIGPSVLGSAVSMDKEVSKKLLSEAGLFIGKYFA---YTKDRKGNIDYEKVKENLGTPVF 190

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD----A 185
           +KP   GSS+GI  + + +   + +    ++ + ++++IE+ + G E+ C V+G+    A
Sbjct: 191 VKPANQGSSVGISKVYEKKKFYMAV--DEAFRYDNKIVIEEEIKGREIECAVLGNEDPIA 248

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHV---LPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
           SL   E+    S FYSY+ KY  +NS  V   +PA++  D  ++V++ A  A +A+ C G
Sbjct: 249 SLP-GEVLFTDS-FYSYDAKY--INSGGVQLKVPAELDGDDVEKVKKEAIKAFKALQCNG 304

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           ++R DF F      +F  EIN  PG T +S++P++   +G  +++L+  M+
Sbjct: 305 VARVDF-FLTKEGNLFVNEINTLPGFTKLSMYPKLWEVSGLPYKDLVNKMI 354


>gi|5353567|gb|AAD42184.1|AF130997_5 D-alanine:D-lactate ligase [Enterococcus faecium]
          Length = 343

 Score =  123 bits (308), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 94/338 (27%), Positives = 167/338 (49%), Gaps = 49/338 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------------------- 38
           +AVL GG S E  VS+ S    A+ ++   ++   I +                      
Sbjct: 6   VAVLFGGCSEEHNVSIKSAMEIAANIDTKKYQPYYIGITKSGVWKMCEKPCLEWEQYAGD 65

Query: 39  ------DRSV-GLVLA-----HLKP-DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
                 DRS  GL++       ++P D+ F ++HG FGEDG +Q +LEL  IPY    I 
Sbjct: 66  PVVFSPDRSTHGLLIQKDKGYEIQPVDVVFPMIHGKFGEDGSIQGLLELSGIPYVGCDIQ 125

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIV 143
           +S + MDK  +  VV + G+ V P   IL     ++++  + P +V KP + GSS G+  
Sbjct: 126 SSVICMDKALAYTVVKNAGITV-PGFRILQEGDRLETEDFVYPVFV-KPARSGSSFGVNK 183

Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDF 199
           + K + +   + ++  ++   ++LIE+ V G E+ C ++G+     + +V +I +    F
Sbjct: 184 VCKAEELQAAIEEARKYD--SKILIEEAVTGSEVGCAILGNGNDLMAGEVDQIELRHGFF 241

Query: 200 YSYEL---KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256
             ++    +  S N+   +PA +P ++ +++Q  A   ++ +GCRG++R D LF      
Sbjct: 242 KIHQEAQPEKGSENAVIRVPAALPDEVREQIQETAMKIYRILGCRGLARID-LFLREDGC 300

Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           +   E+N  PG T  S +P M   AG++  E+L  ++E
Sbjct: 301 IVLNEVNTMPGFTSYSRYPRMMTAAGFTLSEILDRLIE 338


>gi|49066399|gb|AAT49292.1| putative immunity protein [Prevotella nigrescens]
 gi|242332478|tpg|DAA06526.1| TPA_exp: NigB [Prevotella nigrescens]
          Length = 328

 Score =  123 bits (308), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 92/327 (28%), Positives = 157/327 (48%), Gaps = 37/327 (11%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---DRSVGLVLAHLKP----DL 53
           +A++ GG SSE +VSL S +   S  +   + +  +DV   D  V L   H  P    D 
Sbjct: 5   IAIVCGGDSSEHDVSLRSAQGLYSFFDKERYNIYIVDVKGTDWHVNLDNGHTAPINKNDF 64

Query: 54  AFN-------------VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           +FN              +HG  GE+G++Q   EL+ IPY+   +LASAL+ DK    + +
Sbjct: 65  SFNNNGQTVFFDYAYITIHGRPGENGIMQGYFELVNIPYSTCDVLASALTFDKFVLNRYL 124

Query: 101 SSCGVPVCPSILVNRFTMDSQHLISP----PYVIKPLKGGSSLGIIVIKK-DQSIPLDLL 155
            S G+ V  SIL+      ++  I+     P  +KP   GSS G+  +K  DQ  P    
Sbjct: 125 KSYGIHVSESILLRLGETYNEREIAEKIGMPCFVKPATDGSSFGVSKVKNADQLAP---A 181

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDAS----LDVTEIAVPKSDFYSYELKYSSLNS 211
              ++    ++++E ++DG+E+T G+           +TE+ V  ++F+ Y  KY+    
Sbjct: 182 LRKAFMESSEVMVESFLDGVEITQGIYKTREKSVPFPITEV-VTSNEFFDYNAKYNG-EV 239

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF---DPLSRKVFWLEINVQPGM 268
             + PA+I  ++ ++V  +    +  +   GI R D++    +  +  +  LE+N  PGM
Sbjct: 240 DEITPARISKELAEKVTEVTSHIYDILHANGIIRIDYIITKDNDGNDVINMLEVNTTPGM 299

Query: 269 TPVSIFPEMAAYAGYSFRELLLWMVED 295
           T  S  P+    AG   + +L  +VE+
Sbjct: 300 TVTSFVPQQVRAAGLDIKNVLSDIVEN 326


>gi|269976776|ref|ZP_06183751.1| D-alanine--D-alanine ligase [Mobiluncus mulieris 28-1]
 gi|269934973|gb|EEZ91532.1| D-alanine--D-alanine ligase [Mobiluncus mulieris 28-1]
          Length = 374

 Score =  123 bits (308), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 76/262 (29%), Positives = 133/262 (50%), Gaps = 19/262 (7%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+   +LHG +GEDG +Q + E++ +PYT  G+ ASAL MDK  +KQV+   G+PV    
Sbjct: 107 DVVMPLLHGPYGEDGTIQGLCEMVGVPYTGCGVTASALCMDKGYTKQVLERGGIPVGRFH 166

Query: 112 LVNRFTMDSQHLISP--------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
           ++  +    +    P        P  +KP + GSSLG+  ++  +     ++ +    H 
Sbjct: 167 VITDYAWRHRESAVPAEVLDFGLPVFVKPSRAGSSLGVSRVEAWEEFEAAVVAAR--RHD 224

Query: 164 DQLLIEQYVDGI-ELTCGVMGDASLDVTEIAVPKS-------DFYSYELKYSSLNSTHV- 214
            ++++E  V G  E+ C V+          A+P           Y +E KY + ++  + 
Sbjct: 225 PKVIVEAGVVGAREVECAVLEGRDGAAPRTAIPGEVVMKQTPGMYDFESKYFAQDAVSLS 284

Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274
           +PA+IP  + K +   A  A + +   G++R DF +   + ++   EIN  PGMTP S+F
Sbjct: 285 IPAQIPELVAKRICDYARQAFELVSGEGLARVDFFYVEETGRLILNEINTMPGMTPFSLF 344

Query: 275 PEMAAYAGYSFRELLLWMVEDA 296
           P M  + G  +++L+  ++E A
Sbjct: 345 PGMWEHMGMPYQDLVTELIEIA 366


>gi|261338020|ref|ZP_05965904.1| D-alanine--D-alanine ligase [Bifidobacterium gallicum DSM 20093]
 gi|270277527|gb|EFA23381.1| D-alanine--D-alanine ligase [Bifidobacterium gallicum DSM 20093]
          Length = 389

 Score =  123 bits (308), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 84/284 (29%), Positives = 137/284 (48%), Gaps = 36/284 (12%)

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV 105
           L H+  D+ F VLHG  GEDG +Q + E+L +PY   G+LASA SMDK  +K ++ + G+
Sbjct: 102 LGHI--DVVFPVLHGPNGEDGTIQGLFEMLGVPYVGCGVLASAASMDKHYTKVLLDNAGI 159

Query: 106 PVCPSILVNR--FTMDSQHL--------------ISPPYVIKPLKGGSSLGIIVIKK--- 146
            V   I ++   F  D+Q                +  P  +KP + GSS G+  + +   
Sbjct: 160 AVANGITLDTRAFDADTQFAAQGETLLNMVEEAGLQYPLFVKPSRAGSSFGVTKVDRAGD 219

Query: 147 --DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP--------- 195
               +  L      +  H  ++L+EQ VD  E+ C V+   +    + ++P         
Sbjct: 220 AVSGAAQLAAAVYEAAQHDWRVLVEQGVDAREIECAVLCPVAGQPVQASLPGEIVLDRRA 279

Query: 196 --KSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
                FY ++ KY    ++HV +PA +P D+ + V+  A  A +A+   G+SR D  F  
Sbjct: 280 EGDDQFYDFDSKYMDKQASHVEVPAHLPEDVLERVRETAIKAFKAVDGMGLSRVDS-FVT 338

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
               V   EIN  PG T +S++P+    +G  + EL+  ++E A
Sbjct: 339 ADGDVIVNEINTMPGFTSISMYPKAWEASGLPYGELITTLIEGA 382


>gi|5305926|gb|AAD41882.1|AF153050_3 D-alanine:D-lactate ligase [Enterococcus faecium]
 gi|222159814|gb|ACM47287.1| D-Ala:D-Lac ligase VanD [Enterococcus faecium]
          Length = 343

 Score =  123 bits (308), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 94/338 (27%), Positives = 168/338 (49%), Gaps = 49/338 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------------------- 38
           +AVL GG S E  VS+ S    A+ ++   ++   I +                      
Sbjct: 6   VAVLFGGCSEEHNVSIKSAMEIAANIDTKKYQPYYIGITKSGVWKMCEKPCLGWEQYAGD 65

Query: 39  ------DRSV-GLVLA-----HLKP-DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
                 DRS  GL++       ++P D+ F ++HG FGEDG +Q +LEL  IPY    I 
Sbjct: 66  PVVFSPDRSTHGLLIQKDTGYEIQPVDVVFPMIHGKFGEDGSIQGLLELSGIPYVGCDIQ 125

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIV 143
           +S + MDK  +  VV + G+ V P   IL     ++++ L+ P +V KP + GSS G+  
Sbjct: 126 SSVICMDKALAYTVVKNAGIAV-PGFRILQEGDRLETEDLVYPVFV-KPARSGSSFGVNK 183

Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDF 199
           + K + +   + ++  ++   ++LIE+ V G E+ C ++G+     + +V +I +    F
Sbjct: 184 VCKAEELQAAIREARKYD--SKILIEEAVTGSEVGCAILGNENDLMAGEVDQIELRHGFF 241

Query: 200 YSYEL---KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256
             ++    +  S N+   +PA +P ++ + +++ A   ++ +GCRG++R D LF      
Sbjct: 242 KIHQEAQPEKGSENAVIRVPAALPDEVRERIRKTAMKIYRILGCRGLARID-LFLREDGC 300

Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           +   E+N  PG T  S +P M   AG++  E+L  ++E
Sbjct: 301 IVLNEVNTMPGFTSYSRYPRMMTAAGFTLSEILDRLIE 338


>gi|255325982|ref|ZP_05367072.1| D-alanine--D-alanine ligase [Rothia mucilaginosa ATCC 25296]
 gi|255296997|gb|EET76324.1| D-alanine--D-alanine ligase [Rothia mucilaginosa ATCC 25296]
          Length = 372

 Score =  123 bits (308), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 86/256 (33%), Positives = 129/256 (50%), Gaps = 21/256 (8%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-S 110
           D+ F +LHG FGEDG VQ +LE+ ++ Y   G+ ASA+ MDK   K    S G+ V P  
Sbjct: 105 DVVFPLLHGPFGEDGTVQGLLEMADLRYVGCGVTASAVGMDKHFMKVAFESAGLEVGPYE 164

Query: 111 ILVNR--FTMDSQHLISP------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
           ++ NR     D + ++        P  +KP + GSS GI   K D    L      +  H
Sbjct: 165 VVTNRQWEHEDREQILERVLKLGFPMFVKPTRAGSSFGI--TKVDSVEELVPAIEEARRH 222

Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDV------TEIAVPKSD--FYSYELKYSSLNST-H 213
             +++IE  + G E+ C V+     ++       EI V   D  FY +E KY S +S   
Sbjct: 223 DPKIIIEAGIVGREIECAVLDGHHGEMPRASYPGEIEVVDQDHGFYDFEAKYVSESSAVT 282

Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273
           V PA +P D+ + ++ LA  A  A+   G+SR+DF +    R V   E+N  PG TP+S+
Sbjct: 283 VCPANLPQDVQERLRELAVKAFLALDGEGLSRADFFYTEDGRLVIN-EVNTMPGFTPISM 341

Query: 274 FPEMAAYAGYSFRELL 289
           +  M    G S+ +L+
Sbjct: 342 YKTMWENTGISYTDLI 357


>gi|303236159|ref|ZP_07322760.1| D-ala D-ala ligase N-terminal domain protein [Prevotella disiens
           FB035-09AN]
 gi|302483665|gb|EFL46659.1| D-ala D-ala ligase N-terminal domain protein [Prevotella disiens
           FB035-09AN]
          Length = 331

 Score =  122 bits (307), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 92/326 (28%), Positives = 157/326 (48%), Gaps = 35/326 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-------DRSVGLVLAHLKPDL 53
           +A++ GG SSE +VSL S +   S  +   + +  +DV       +   G + A  K D 
Sbjct: 8   IAIICGGDSSEHDVSLRSAQGLYSFFDKELYNIYIVDVKGTDWHVNLDNGRIAAINKNDF 67

Query: 54  AFN-------------VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           +FN              +HG  GE+G++Q  LEL+ +PY+   +L SAL+ DK    + +
Sbjct: 68  SFNNEGETVFFDYAYITIHGRPGENGIMQGYLELINMPYSTCDVLTSALTFDKFVLNRYL 127

Query: 101 SSCGVPVCPSILVN-RFTMDSQHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
            S G+ V  SIL+    + D + +   +  P  IKP   GSS G+  +K    I   L +
Sbjct: 128 KSYGIRVPESILLRLEDSYDEKEIEQKMGMPCFIKPATDGSSFGVSKVKNADQIAPALRK 187

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDAS----LDVTEIAVPKSDFYSYELKYSSLNST 212
             ++    ++++E ++DGIE+T G+           +TE+ V  ++F+ Y  KY+     
Sbjct: 188 --AFMESSEVMVEGFLDGIEITQGIYKTKEKSVPFPITEV-VTSNEFFDYNAKYNG-EVD 243

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF--DPLSRKVF-WLEINVQPGMT 269
            + PA+I  ++  +V  +    +  +   GI R D++   D     V   LE+N  PGMT
Sbjct: 244 EITPARISKELADKVSEMTSRIYDILHANGIIRIDYIITKDEAGNDVINMLEVNTTPGMT 303

Query: 270 PVSIFPEMAAYAGYSFRELLLWMVED 295
             S  P+    AG   +++L  +VE+
Sbjct: 304 ATSFIPQQVRAAGLDIKDVLSEIVEN 329


>gi|329848165|ref|ZP_08263193.1| D-ala D-ala ligase protein [Asticcacaulis biprosthecum C19]
 gi|328843228|gb|EGF92797.1| D-ala D-ala ligase protein [Asticcacaulis biprosthecum C19]
          Length = 329

 Score =  122 bits (307), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 99/326 (30%), Positives = 146/326 (44%), Gaps = 43/326 (13%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSV---GLVLAHLKP-------- 51
           +L GG S ER VS++S +A A AL DA       D   +V     + AH +P        
Sbjct: 5   ILFGGTSRERLVSVASAQALAHALPDADLWFWDHDGTVNVTSPAALHAHDRPFELPFRAD 64

Query: 52  -----------DLAFNV-------LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDK 93
                      DLA +        LHG   E+G  Q + E   +P+T SG  AS L+ DK
Sbjct: 65  GILIGDMAGSLDLAVHENRVLVLGLHGGSAENGEFQVLAEARGVPFTGSGSAASHLAFDK 124

Query: 94  MRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153
             +K+     GV    S+ ++       H      + KP + GSS G+I +   Q    D
Sbjct: 125 TAAKRFAGLAGVHSPSSVSLDELDEAFSHYGK--LIAKPAQDGSSFGLIYVNSSQ----D 178

Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA-----SLDVTEIAVPKSDFYSYELKYSS 208
           L            +IE +V G E TCGV+  A     +L   EI VP    + Y+ KY +
Sbjct: 179 LAAVRREAKTTAYVIEPFVTGPEATCGVLEQADGSLIALPPVEI-VPAEGTFDYKSKYLA 237

Query: 209 LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268
             +  + PA+   +I  +++ L+  AH+A+ CRG SRSDF+         +LE N  PG+
Sbjct: 238 AATQEICPARFASEIMAQLRDLSIKAHKAMSCRGYSRSDFIIS--DHGPVYLETNTLPGL 295

Query: 269 TPVSIFPEMAAYAGYSFRELLLWMVE 294
           T  S++P+     G  F + L   +E
Sbjct: 296 TKASLYPKSLKAQGIEFVDFLNGQIE 321


>gi|329117509|ref|ZP_08246226.1| D-ala D-ala ligase N-terminal domain protein [Streptococcus
           parauberis NCFD 2020]
 gi|326907914|gb|EGE54828.1| D-ala D-ala ligase N-terminal domain protein [Streptococcus
           parauberis NCFD 2020]
          Length = 348

 Score =  122 bits (307), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 101/336 (30%), Positives = 166/336 (49%), Gaps = 49/336 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKV-----SQI-DVDRSVGLVLAHLKPD-- 52
           + +L GG S+EREVS+ S ++   A+    F V     SQ+ D  ++  L     KPD  
Sbjct: 6   LVLLYGGRSAEREVSVLSAESVMRAINYDKFFVKTYFISQVGDFYKTQEL---SQKPDDN 62

Query: 53  -------------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87
                                    + F VLHG  GEDG +Q  LE+L++PY  + IL+S
Sbjct: 63  EKLMTNQSIEQSQLIKASDIYEENAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGTNILSS 122

Query: 88  ALSMDKMRSKQVVSSCGVP-VCPSILVNRFTMD-----SQHLISPPYVIKPLKGGSSLGI 141
           +++MDK+ +K V++S G+P V  ++ +    +D     +   +  P  +KP   GSS+GI
Sbjct: 123 SVAMDKITTKHVLASAGIPQVAFTVYIEGNDLDACMSETMEKLQFPIFVKPANMGSSVGI 182

Query: 142 IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSD 198
              K +  + L      +  +  ++LIEQ V   E+  G++G+ S+  T   E+ V    
Sbjct: 183 --SKAETEMELKEAIGLALKYDSRILIEQGVVAREIEVGLLGNNSVKSTFPGEV-VKDVA 239

Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
           FY Y+ KY     T  +PA+I  +I KE++  A  A +A+G  G+SR DF        ++
Sbjct: 240 FYDYQAKYIDNKITMAIPAEIDSEIVKEMRAYAEAAFKALGGCGLSRCDFFLTE-DGHMY 298

Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             E+N  PG T  S++P +    G  + +L+  +V+
Sbjct: 299 LNELNTMPGFTQWSMYPLLWENMGLVYSDLIEELVK 334


>gi|148240092|ref|YP_001225479.1| D-alanine--D-alanine ligase [Synechococcus sp. WH 7803]
 gi|190359213|sp|A5GML7|DDL_SYNPW RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|147848631|emb|CAK24182.1| D-alanine--D-alanine ligase [Synechococcus sp. WH 7803]
          Length = 353

 Score =  122 bits (307), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 85/259 (32%), Positives = 133/259 (51%), Gaps = 17/259 (6%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCG---VPVC 108
           DL + VLHG  GEDG VQ +  L+  P+  SG+L SA+ MDK+  K   ++ G   VP  
Sbjct: 96  DLWYPVLHGPNGEDGTVQGLFTLMNKPFVGSGVLGSAVGMDKLAMKAAFAAAGLSQVPYM 155

Query: 109 ---------PSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
                    P  L    T   Q L  P +V KP   GSS+GI        +   L Q+++
Sbjct: 156 GLTAADLEDPERLEQLLTRVEQELGYPCFV-KPANLGSSVGITKANNRDELLAGLHQAAA 214

Query: 160 WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK--SDFYSYELKYSSLNSTHVLPA 217
            +   +LL+EQ V+  EL C V+G   L  + +   +  +D+Y YE KY+   S  ++PA
Sbjct: 215 LD--PRLLVEQGVNARELECAVLGRRHLRASVVGEIRFDADWYDYETKYTEGRSHTLIPA 272

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
            +P  + +++Q +A  A  A+   G +R D  +D  S +++  EIN  PG T  S++P +
Sbjct: 273 PLPALVSQQIQAMAIRACHAVHAFGQARVDVFYDETSGEIWLNEINTLPGFTSQSMYPTL 332

Query: 278 AAYAGYSFRELLLWMVEDA 296
            A +G    +L+  +V+ A
Sbjct: 333 WAASGIPLPQLVAELVDTA 351


>gi|296140535|ref|YP_003647778.1| D-alanine/D-alanine ligase [Tsukamurella paurometabola DSM 20162]
 gi|296028669|gb|ADG79439.1| D-alanine/D-alanine ligase [Tsukamurella paurometabola DSM 20162]
          Length = 362

 Score =  122 bits (307), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 83/257 (32%), Positives = 138/257 (53%), Gaps = 16/257 (6%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-S 110
           D+ F VLHG +GEDG +Q +LE+  +PY  +G+LASA  MDK  +K+++++ G+PV    
Sbjct: 102 DVVFPVLHGPYGEDGTLQGLLEMAGVPYVGAGVLASAAGMDKEFAKKLLAADGLPVGDFH 161

Query: 111 ILVNRFTM---DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL 167
           +L  R T    +  H +  P  +KP +GGSS+GI  +    ++P  + ++  W+   +++
Sbjct: 162 VLRQRETEVPPEVLHRLGLPLFVKPARGGSSIGITRVTDLAALPAAIAEARRWD--PKVI 219

Query: 168 IEQYVDGIELTCGVMG--DASLDVTEIAV------PKSDFYSYELKYSSLNSTHVLPAKI 219
           IE  V G E+  GV+   D ++  + IA        +  FY +E KY    + + +PA +
Sbjct: 220 IEAAVIGREVEIGVLERPDGTVHASAIAEIEMAADAEHAFYDFETKYLDDRAQYTVPADL 279

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279
             +    +  LA  A  A   +G++R DF F      V   E+N  PG T  S++P M A
Sbjct: 280 TEEQTSAIAELAVRAFHAFDGQGLARVDF-FQTAEGPVIN-EVNTMPGFTSTSMYPRMWA 337

Query: 280 YAGYSFRELLLWMVEDA 296
            +G  + ELL  +++ A
Sbjct: 338 ESGIGYAELLSLLIDTA 354


>gi|44805036|gb|AAS47778.1| D-alanine-D-serine ligase [Clostridium innocuum]
          Length = 355

 Score =  122 bits (307), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 76/262 (29%), Positives = 125/262 (47%), Gaps = 17/262 (6%)

Query: 45  VLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCG 104
               ++ D  F +LHG  GEDG +Q + EL  IPY   G +  A+ MDK  +  V+   G
Sbjct: 92  TFTRIEVDCIFPILHGKNGEDGTIQTLFELSGIPYVGCGHMRFAICMDKEMAHIVMEHAG 151

Query: 105 VPVCPSILV--------NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
           +   P + V         +    ++  +  P  IKP   GSS GI  ++        +  
Sbjct: 152 ISCAPFVCVYEADDLDYRKVYEHAKETLGLPIFIKPANAGSSFGIHRMESFDGFEEAMKD 211

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGD-----ASLDVTEIAVPKSDFYSYELKYSSLNS 211
           +   +   ++++E  ++G E+   VMG+      S+D  E A P   F+ YE KY  ++S
Sbjct: 212 AFYHDGKGKVILETTIEGFEIGVAVMGNKELFAGSVDEIETAAP---FFDYEGKYEMVDS 268

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271
               PA+I   +++E + +A  A++A+ C+G++R D    P    +   E+N  PG T  
Sbjct: 269 HIYCPARISPKLFEEAREIAKKAYRAMNCKGMTRVDMFVTP-EDTIILNEVNTIPGFTDT 327

Query: 272 SIFPEMAAYAGYSFRELLLWMV 293
           S +P M   AG  F EL+  +V
Sbjct: 328 SRYPTMMKEAGIPFPELIDKLV 349


>gi|256832903|ref|YP_003161630.1| D-alanine/D-alanine ligase [Jonesia denitrificans DSM 20603]
 gi|256686434|gb|ACV09327.1| D-alanine/D-alanine ligase [Jonesia denitrificans DSM 20603]
          Length = 389

 Score =  122 bits (307), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 86/268 (32%), Positives = 132/268 (49%), Gaps = 21/268 (7%)

Query: 45  VLAHLKP-DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103
           VL  + P D+   +LHG FGEDG VQ +LEL ++ Y   G+L SA+ MDK   K V    
Sbjct: 115 VLESVGPVDVVLPLLHGPFGEDGTVQGMLELADLRYVGVGVLGSAVGMDKHYMKLVFEGH 174

Query: 104 GVPVCP--SILVNRFTMDSQHL------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
           G+PV P  ++   ++  D   +      +  P  +KP + GSSLGI   K      LD  
Sbjct: 175 GLPVGPYTTVFPGQWQRDPDEVRARVVALGLPVFVKPTRAGSSLGI--SKVSDVGDLDRA 232

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKS--------DFYSYELKYS 207
            + +  H  +++IE  + G E+ C V+G         ++P          +FY +E KY 
Sbjct: 233 MAEALKHDPKVIIEAGIVGREIECAVLGGHGDTPARASLPGEITMTGSAHEFYDFEAKYL 292

Query: 208 SLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
              S  +  PA++       V+ +A  A  A+G  G+SR D +F      V   EIN  P
Sbjct: 293 DDASAQLSCPAELDETTTATVREVAVRAFDAVGGEGLSRVD-VFVQEDGAVVVNEINTMP 351

Query: 267 GMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           G TP+S++P M   +G S+ EL+  +++
Sbjct: 352 GFTPISMYPRMWERSGVSYTELISELID 379


>gi|203284120|ref|YP_002221860.1| D-alanine--D-alanine ligase [Borrelia duttonii Ly]
 gi|226696384|sp|B5RL25|DDL_BORDL RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|201083563|gb|ACH93154.1| D-alanine--D-alanine ligase [Borrelia duttonii Ly]
          Length = 364

 Score =  122 bits (306), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 88/337 (26%), Positives = 166/337 (49%), Gaps = 50/337 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASAL-EDAGFKVSQIDVDRSVG-------------LVL 46
           + ++ GG+S E E+SL S     S+L +   + V  + VD+  G             L+ 
Sbjct: 5   LMLIFGGVSFEHEISLRSAYGIYSSLLKLDKYNVFSVFVDKVTGIWYLLDSVPSSAELIK 64

Query: 47  AH-------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87
            H                   L+ D+ F ++HG  GEDG +Q  +++++IP   +GIL S
Sbjct: 65  RHTTSIVNFIPGCGIFVNNKSLEIDVIFPIIHGRTGEDGAIQGFVKMMDIPCVGAGILGS 124

Query: 88  ALSMDKMRSKQVVSSCGVPVCPSI-------LVNR--FTMDSQHLISPPYVIKPLKGGSS 138
           A+S++K   K ++ S  +PV   I       ++N+     D  + ++ P ++KP   GSS
Sbjct: 125 AISINKYFCKVLLKSFNIPVVSFIGFKKDDYILNKEGIKEDINNKLNYPVIVKPSVLGSS 184

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVP 195
           +GI V      I   + ++  ++    +++E+++   E+ C V+G+  + +    EI V 
Sbjct: 185 IGINVAYNVSQIEKYIEEAFEYDL--TVVVEKFIKAREIECAVIGNDQIKIFTPGEIVVQ 242

Query: 196 KSDFYSYELKYSSLNSTHV---LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
              FY Y+ KYS++    +   +PA + +    +++  AFL ++ +  RG++R DFL   
Sbjct: 243 DFIFYDYDAKYSTVPGDSIVFNIPAHLDMKHLLDIKEYAFLTYKYLELRGMARIDFLISK 302

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
            +  ++  E+N  PG T +S+F +M  + G S+  L+
Sbjct: 303 DTNLLYVNEVNTIPGFTDISMFAKMCEHDGLSYESLV 339


>gi|284031545|ref|YP_003381476.1| D-alanine/D-alanine ligase [Kribbella flavida DSM 17836]
 gi|283810838|gb|ADB32677.1| D-alanine/D-alanine ligase [Kribbella flavida DSM 17836]
          Length = 342

 Score =  122 bits (306), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 101/335 (30%), Positives = 160/335 (47%), Gaps = 54/335 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASAL----------------------------EDAGFK 32
           + +L GG+S E  +SL S +  A +L                            E+   +
Sbjct: 3   IGILFGGVSEEHPISLKSAREVARSLDPERYEPYYVGITRGGAWMLCDGPDDDWENGTGR 62

Query: 33  VSQIDVDRSV-GLVLAH------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
            + +  DR+V GL++        ++ D+   VLHG  GEDG +Q +LEL  IPY    I 
Sbjct: 63  PAVLSPDRTVHGLLVLEQGRYETIRLDVVLPVLHGRLGEDGAIQGLLELSGIPYVGCDIP 122

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL----ISPPYVIKPLKGGSSLGI 141
           +SAL MDK  +  V  S G+        N +T+ ++ L    ++ P  +KP + GSS G+
Sbjct: 123 SSALCMDKSLAYVVARSAGIATP-----NFWTVAAKELPDADLTYPVFVKPARSGSSFGV 177

Query: 142 IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS----LDVTEIAVPKS 197
             + +   +P  +  +S ++   ++LIEQ V G E+ C V+G+       +V  IA+   
Sbjct: 178 SKVTQADDLPSAVEVASQYDS--KVLIEQAVVGREIGCAVLGNGGDLVVGEVDHIALSHG 235

Query: 198 DFYSY---ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
            F  +   E +  S NST ++PA IP      V+  A   ++A+GC G++R D LF    
Sbjct: 236 FFRIHQESEPESGSDNSTAIVPADIPAASRTLVRDTAKAVYRALGCGGLARVD-LFLTED 294

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
             V   E+N  PG+T  S +P M A AG S  E++
Sbjct: 295 GAVVLNEVNTLPGLTSYSRYPRMMAAAGLSMGEVI 329


>gi|324990632|gb|EGC22568.1| D-alanine-D-alanine ligase [Streptococcus sanguinis SK353]
          Length = 353

 Score =  122 bits (306), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 100/344 (29%), Positives = 165/344 (47%), Gaps = 54/344 (15%)

Query: 3   VLMGGISSEREVSLSSGKACASAL-------------EDAGFKVSQ-------------- 35
           +L GG S+EREVS+ S ++   A+             +D  F  +Q              
Sbjct: 13  LLYGGRSAEREVSVLSAESVMRAVNYDRFSVKTYFITKDGDFIQTQEFEAKPAADEKLMT 72

Query: 36  ---IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
              +D+ R +     +    + F VLHG  GEDG +Q  LE+L++PY    IL+S L+MD
Sbjct: 73  NATVDMSRKIKPSDIYEDGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNILSSGLAMD 132

Query: 93  KMRSKQVVSSCGVPVCPSILVNRFTMDSQHL----------ISPPYVIKPLKGGSSLGII 142
           K+ +K+V+ S G+   P + +    +D + L          ++ P   KP   GSS+GI 
Sbjct: 133 KITTKRVLESAGIAQVPYVAL----VDGEDLEEKIQEIEEKLTYPVFTKPSNMGSSVGI- 187

Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDF 199
             K +    L      ++ +  ++L+EQ V   E+  G++G+  +  T   E+ V    F
Sbjct: 188 -SKSENRAELRASLDLAFKYDSRVLVEQGVTAREIEVGLLGNVDVKSTLPGEV-VKDVAF 245

Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
           Y YE KY     T  +PAKI  ++   +++ A  A +A+G  G+SR DF +     +VF 
Sbjct: 246 YDYEAKYIDNKITMDIPAKISEEVVSLMRQNAEAAFRALGGLGLSRCDFFYTE-DGQVFL 304

Query: 260 LEINVQPGMTPVSIFPEMAAYAGYSFREL---LLWMVEDASCLR 300
            E+N  PG T  S++P +    G ++ +L   L+ + E+A   R
Sbjct: 305 NELNTMPGFTQWSMYPLLWENMGLAYPDLIEKLVGLAEEAFAKR 348


>gi|325479720|gb|EGC82810.1| D-ala D-ala ligase N-terminal domain protein [Anaerococcus prevotii
           ACS-065-V-Col13]
          Length = 345

 Score =  122 bits (306), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 79/249 (31%), Positives = 127/249 (51%), Gaps = 12/249 (4%)

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116
           V+HG +GEDG +QA L++  I Y  +G+L+SA+ MDK+ S  +     +     +  N+ 
Sbjct: 94  VVHGTYGEDGTIQAFLDVAGISYIGNGLLSSAICMDKVTSNDIFEKNKLRQAKYLYTNKE 153

Query: 117 TMDSQHL------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +D   L      I  P ++KP   GSS+G+  +   + +    L++  ++   ++L+E+
Sbjct: 154 GLDDNFLDKCIEEIGLPLIVKPSANGSSVGVNKVTTRKELLDSGLEALKYDK--KVLVEE 211

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSD--FYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
            ++G E+   V+GD + DV++ A   SD  F  Y+ KY S ++   LP K+  D  KE Q
Sbjct: 212 LIEGQEIEFAVVGDMNPDVSKPAAYISDHTFLDYDAKYFSKSTKESLPYKLDEDKLKEAQ 271

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYA-GYSFRE 287
                 + A GC G +R D +F       +  EIN  PG TP S F  +       SF E
Sbjct: 272 EFVKKCYVACGCEGFARVD-IFYANDGNFYVNEINTFPGFTPSSFFARLCELMYDKSFSE 330

Query: 288 LLLWMVEDA 296
           LL  ++ED 
Sbjct: 331 LLDILIEDG 339


>gi|283457865|ref|YP_003362465.1| D-alanine-D-alanine ligase [Rothia mucilaginosa DY-18]
 gi|254967094|gb|ACT97589.1| putative D-alanine-D-alanine ligase [uncultured organism]
 gi|254967098|gb|ACT97591.1| putative D-alanine-D-alanine ligase [uncultured organism]
 gi|254967102|gb|ACT97593.1| putative D-alanine-D-alanine ligase [uncultured organism]
 gi|283133880|dbj|BAI64645.1| D-alanine-D-alanine ligase [Rothia mucilaginosa DY-18]
          Length = 372

 Score =  122 bits (306), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 86/256 (33%), Positives = 128/256 (50%), Gaps = 21/256 (8%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-S 110
           D+ F +LHG FGEDG VQ +LE+ ++ Y   G+ ASA+ MDK   K    S G+ V P  
Sbjct: 105 DVVFPLLHGPFGEDGTVQGLLEMADLHYVGCGVTASAVGMDKHFMKVAFESAGLEVGPYE 164

Query: 111 ILVNR--FTMDSQHLISP------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
           ++ NR     D + ++        P  +KP + GSS GI   K D    L      +  H
Sbjct: 165 VVTNRQWEHEDREQILERVLKLGFPMFVKPTRAGSSFGI--TKVDSVEELVPAIEEARRH 222

Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDV------TEIAVPKSD--FYSYELKYSSLNST-H 213
             +++IE  + G E+ C V+     ++       EI V   D  FY +E KY S +S   
Sbjct: 223 DPKIIIEAGIVGREIECAVLDGHHGEMPRASYPGEIEVVDQDHGFYDFEAKYVSESSAVT 282

Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273
           V PA +P D+   ++ LA  A  A+   G+SR+DF +    R V   E+N  PG TP+S+
Sbjct: 283 VCPANLPQDVQDRLRELAVKAFLALDGEGLSRADFFYTEDGRLVIN-EVNTMPGFTPISM 341

Query: 274 FPEMAAYAGYSFRELL 289
           +  M    G S+ +L+
Sbjct: 342 YKTMWENTGISYTDLI 357


>gi|323341782|ref|ZP_08082015.1| D-alanine-D-lactate ligase [Erysipelothrix rhusiopathiae ATCC
           19414]
 gi|322464207|gb|EFY09400.1| D-alanine-D-lactate ligase [Erysipelothrix rhusiopathiae ATCC
           19414]
          Length = 338

 Score =  122 bits (306), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 87/270 (32%), Positives = 137/270 (50%), Gaps = 15/270 (5%)

Query: 35  QIDVDRSVGLVLAH----LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
           Q + DR  G + A     L  D+AF +LHG  GE G VQ +L+   IP+T   +L+SAL 
Sbjct: 73  QFNYDRP-GFIYADDQSLLPVDVAFLMLHGRMGEGGQVQGLLKCANIPFTGCDVLSSALC 131

Query: 91  MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK-DQS 149
           MDK  +  +  + G+ +    L+          +  P ++KP + GSS G+  ++  D+ 
Sbjct: 132 MDKGFTHIICEAAGIDMAAYQLITHINDIDFEKVEYPCIVKPSREGSSFGVSYVRNYDEL 191

Query: 150 IPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVTEI--AVPKSDFYSYELKY 206
           +   L    ++    ++LIE Y+ G E+  G++  D  L V+E+       + + ++ KY
Sbjct: 192 LNACLF---AFEFDSRVLIEAYIKGTEVGLGILKTDQELIVSEVDQVNVSGEVFDFQEKY 248

Query: 207 SSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
              ++T  LP +  P  + KEVQRL  LA   + C   SR DF F     ++F  E+N  
Sbjct: 249 HP-HATETLPVSTFPESVRKEVQRLGELAFNVLDCAQFSRLDF-FVTEDHRIFLNEVNTI 306

Query: 266 PGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           PG T  S +P M   AG S+ EL+  M+ED
Sbjct: 307 PGFTSSSRYPGMLDRAGVSYPELITKMIED 336


>gi|29376797|ref|NP_815951.1| D-alanine--D-lactate ligase [Enterococcus faecalis V583]
 gi|256960856|ref|ZP_05565027.1| vancomycin B-type resistance protein vanB [Enterococcus faecalis
           Merz96]
 gi|2506340|sp|Q06893|VANB_ENTFA RecName: Full=Vancomycin B-type resistance protein VanB; AltName:
           Full=D-alanine--D-lactate ligase; AltName: Full=VanB
           ligase
 gi|460078|gb|AAC43217.1| D-alanine:D-alanine ligase-related protein induced by vancomycin
           [Enterococcus faecalis]
 gi|1209531|gb|AAB05627.1| D-Ala:D-Lac ligase [Enterococcus faecalis]
 gi|29344262|gb|AAO82021.1| D-alanine--D-lactate ligase [Enterococcus faecalis V583]
 gi|256951352|gb|EEU67984.1| vancomycin B-type resistance protein vanB [Enterococcus faecalis
           Merz96]
 gi|741410|prf||2007289A D-Ala lactate ligase
          Length = 342

 Score =  122 bits (306), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 79/245 (32%), Positives = 125/245 (51%), Gaps = 10/245 (4%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+AF VLHG  GEDG +Q + EL  IPY    I +SA  MDK  +  +  + G+ V    
Sbjct: 91  DVAFPVLHGKCGEDGAIQGLFELSGIPYVGCDIQSSAACMDKSLAYILTKNAGIAVPEFQ 150

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
           ++ +        ++ P  +KP + GSS G  V K + +  L+    ++  +  ++LIEQ 
Sbjct: 151 MIEKGDKPEARTLTYPVFVKPARSGSSFG--VTKVNSTEELNAAIEAAGQYDGKILIEQA 208

Query: 172 VDGIELTCGVMGDAS----LDVTEIAVPKSDFYSY---ELKYSSLNSTHVLPAKIPLDIY 224
           + G E+ C VMG+       +V +I +    F  +   E +  S N+  ++PA IP++  
Sbjct: 209 ISGCEVGCAVMGNEDDLIVGEVDQIRLSHGIFRIHQENEPEKGSENAMIIVPADIPVEER 268

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
             VQ  A   ++ +GCRG++R D LF      +   E+N  PG T  S +P MAA AG +
Sbjct: 269 NRVQETAKKVYRVLGCRGLARVD-LFLQEDGGIVLNEVNTLPGFTSYSRYPRMAAAAGIT 327

Query: 285 FRELL 289
              L+
Sbjct: 328 LPALI 332


>gi|297171287|gb|ADI22293.1| D-alanine-D-alanine ligase and related ATP-grasp enzymes
           [uncultured actinobacterium HF0200_46I24]
          Length = 364

 Score =  122 bits (306), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 82/258 (31%), Positives = 138/258 (53%), Gaps = 21/258 (8%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           ++ F +LHG +GEDG +Q +LEL  + Y  +G+ ASA+ MDK+ ++ + ++ G+P     
Sbjct: 96  EVVFPLLHGPYGEDGTIQGLLELAGLAYVGAGVSASAVGMDKVLARAIFAASGLPQTQYS 155

Query: 112 LVNRF-----------TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160
           ++ R             ++ +H    P  +KP   GSS+GI  +   Q +   L  +S +
Sbjct: 156 VIMRSEWRREQAPVLERLEEEH--DYPLFVKPANLGSSVGISKVHDRQGLHAALELASRF 213

Query: 161 NHGDQLLIEQYVDGI-ELTCGVMGD---ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216
           +   +L+IE+ V+   EL C ++G+    +  V EI +P  +FY Y  KY    S  V+P
Sbjct: 214 D--TKLIIERSVENARELECAILGNDYPKASGVGEI-IPGGEFYDYTTKYIDERSQLVIP 270

Query: 217 AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPE 276
           A +     + VQ LA  A +AI C G++R D  F      V   EIN  PG TP+S++P+
Sbjct: 271 AVLEKSESEAVQELAIRAFKAIDCSGLARVD-CFMCSDGSVLVNEINTMPGFTPISMYPK 329

Query: 277 MAAYAGYSFRELLLWMVE 294
           + A AG  + +L+  +++
Sbjct: 330 LWAAAGIDYGDLIDRLIQ 347


>gi|149276235|ref|ZP_01882379.1| D-alanylalanine synthetase [Pedobacter sp. BAL39]
 gi|149232755|gb|EDM38130.1| D-alanylalanine synthetase [Pedobacter sp. BAL39]
          Length = 335

 Score =  122 bits (305), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 91/327 (27%), Positives = 157/327 (48%), Gaps = 36/327 (11%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI-----------------DVDR--- 40
           +A+L GG + E  +S+ S    A  L+   F+V +I                 +VDR   
Sbjct: 12  IALLTGGTTGEWVISVKSAATIAHNLDADKFEVYKIMLTQQGWFYEPADAVKIEVDRNDF 71

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           S+ +    +  D  F  +HG+ GEDG +Q   ++L +PYT    L S+++M+K  +K +V
Sbjct: 72  SLTINGKKIIFDGVFIAIHGSPGEDGKLQGYFDMLNLPYTTCNALTSSVTMNKGYTKAIV 131

Query: 101 SSCGVP---VCPSILVNR---FTMDS-QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153
           +  G+P   V  S  + +   + +D  ++ +  PY +KP  GGSS+G+   K   +  L 
Sbjct: 132 N--GIPNLHVAKSAQIFKNIPYDIDQLKNDLKIPYFVKPNNGGSSIGMS--KVTHAADLQ 187

Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDV---TEIAVPKSDFYSYELKYSSL 209
                ++   DQ+LIE+++ G E T GV+  D  + V   TE+   K +F+ +E KY+  
Sbjct: 188 EAIEKAFKEDDQILIEEFISGREFTVGVVKIDGEITVLPATEVETAK-EFFDFEAKYTPG 246

Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
            +T   PA I  +    V ++A   +  + C G+ R DF+        +++EIN  PG T
Sbjct: 247 VATETTPAPIRAETKARVGQIAKDVYLKLNCSGVVRIDFILTEDEGDFYFIEINTIPGQT 306

Query: 270 PVSIFPEMAAYAGYSFRELLLWMVEDA 296
             S  P+  A  G    +    ++ + 
Sbjct: 307 ATSFIPQQVAAMGMKLNDFYTKLIRET 333


>gi|148257414|ref|YP_001241999.1| D-alanine--D-alanine ligase [Bradyrhizobium sp. BTAi1]
 gi|146409587|gb|ABQ38093.1| D-alanine--D-alanine ligase [Bradyrhizobium sp. BTAi1]
          Length = 329

 Score =  122 bits (305), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 99/327 (30%), Positives = 153/327 (46%), Gaps = 45/327 (13%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQID--VDRSVGLVL-AHLKP-DLAFNV- 57
           +L GG + ER VS++S +A  + L D+     + D  V R  G  L AH +P +  F   
Sbjct: 5   ILFGGSNKERLVSVASAQALHATLPDSDLWFWEADDAVHRVSGKALVAHARPFEEPFTAD 64

Query: 58  ------------------------LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDK 93
                                   LHG   E+G +Q + E+  +P+T S   AS L+ DK
Sbjct: 65  GPRIGTLADALDRAKAEDRVLVLALHGGRAENGELQVMCEMRGVPFTGSSSAASHLAFDK 124

Query: 94  MRSKQVVSSCGVPVCPSI-LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152
           + +K+     GV V   + L +     +QH      + KP+K GSS G+I +   Q    
Sbjct: 125 VAAKRFAVLGGVTVAEGVSLADAEAALAQH---GRLIAKPVKDGSSFGLIFVNAKQ---- 177

Query: 153 DLLQSSSWNHGDQLLIEQYVDGIELTCGVMG--DASLDV---TEIAVPKSDFYSYELKYS 207
           DL+   +    ++ LIE +V G E TCGV+   D SL      EI +P    ++Y  KY 
Sbjct: 178 DLVAVRAAAATEEYLIEPFVTGTEATCGVLEQPDGSLIALPPIEI-LPADGAFNYFAKYL 236

Query: 208 SLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPG 267
           +  +  + P +   +I   +Q  A  AH+A+ C G SRSDF+    +    +LE N  PG
Sbjct: 237 ATATKEICPGRFTPEITAALQTEAIKAHRALSCGGYSRSDFIVS--ANGPVYLETNTLPG 294

Query: 268 MTPVSIFPEMAAYAGYSFRELLLWMVE 294
           +T  S++P+  A    SFR+ L   ++
Sbjct: 295 LTAASLYPKALAAQNISFRDFLQQQID 321


>gi|313833066|gb|EFS70780.1| D-ala D-ala ligase [Propionibacterium acnes HL056PA1]
          Length = 365

 Score =  122 bits (305), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 82/259 (31%), Positives = 128/259 (49%), Gaps = 20/259 (7%)

Query: 53  LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
           + F VLHG FGEDG +Q +LE+  + Y   G+ ASA  MDK  +K ++S  GV V P ++
Sbjct: 100 VVFPVLHGPFGEDGTIQGLLEMAGVRYVGCGVAASANCMDKHLTKMILSEAGVLVGPYVV 159

Query: 113 V--NRFTMDSQHLISP------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164
           V  + +  D + ++        P  +KP +GGSS+GI  +   +   L+     +  H  
Sbjct: 160 VRDHEWREDRKAVLKAVSRLEYPVFVKPARGGSSIGISRVTSPEH--LETAIEMAREHDS 217

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKS-------DFYSYELKYSSLNSTHVLPA 217
           ++LIEQ + G E+ C V+          +VP          FY +E KY S      + A
Sbjct: 218 KVLIEQGIRGREIECSVIDGRHGAAPRASVPGEIVVHDPDGFYDFEAKYLSGEQKASVQA 277

Query: 218 KIPLD--IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275
              LD    + VQ++A  A Q +GC G++R D    P    V+  E N  PG T  S FP
Sbjct: 278 HANLDDATRRRVQKVAIKAFQVLGCEGLARIDTFVTP-DGAVYVNEPNTMPGFTRSSGFP 336

Query: 276 EMAAYAGYSFRELLLWMVE 294
            M   +G ++ +++  ++E
Sbjct: 337 LMWQASGMTYAQIVSELIE 355


>gi|328755989|gb|EGF69605.1| D-ala D-ala ligase [Propionibacterium acnes HL087PA1]
          Length = 315

 Score =  122 bits (305), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 90/310 (29%), Positives = 152/310 (49%), Gaps = 20/310 (6%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62
           VL GG+S +R++SL SG+  A AL   G +V + D+D ++   L      + F +LHG  
Sbjct: 7   VLAGGLSHQRDISLKSGRTVAQALRRGGHEVVEADIDSALIETLRANDGAVVFPMLHGGL 66

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFT-M 118
           GE+G +  +L+L+ IPY  S      +S DK  + + V++ G+ V P  +    + F  +
Sbjct: 67  GENGALLEVLQLMGIPYVGSSPATCRISFDKSIASRAVAAAGI-VTPQQVALPHDVFREL 125

Query: 119 DSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
            +Q ++         P ++KP +GGSSLG+  +     +P  +  ++++ + D +++E++
Sbjct: 126 GAQTVMRSIAEKFGLPVIVKPARGGSSLGVTKVDGVDDLPQAV--ANAYAYDDMVVVEEF 183

Query: 172 VDGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227
           + G EL  G++    G   L   EI  P    Y Y   Y+   +    PA I     +  
Sbjct: 184 IVGTELAIGMITTSEGTRVLPAVEIR-PVGGVYDYSAMYTGGETRLTAPADISDTAAQTA 242

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287
             +A +  + +   GISR D + D   R VF LE    PGMT  S+ P     AG    E
Sbjct: 243 TAMARVVQKELDFSGISRVDAIVDESGRPVF-LEAGAAPGMTATSLVPVAMKAAGLDLGE 301

Query: 288 LLLWMVEDAS 297
           +   +V+D +
Sbjct: 302 VCSRLVDDVA 311


>gi|315498872|ref|YP_004087676.1| d-alanine--d-alanine ligase [Asticcacaulis excentricus CB 48]
 gi|315416884|gb|ADU13525.1| D-alanine--D-alanine ligase [Asticcacaulis excentricus CB 48]
          Length = 329

 Score =  122 bits (305), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 79/242 (32%), Positives = 117/242 (48%), Gaps = 14/242 (5%)

Query: 58  LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117
           LHG   E+G  Q   E   +P+T SG  AS L+ DK+ +K+  +  GV     I ++   
Sbjct: 89  LHGGIAENGEFQVKCEARGVPFTGSGSAASHLAFDKVSAKRFAACAGVSSPAGIALSE-- 146

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
           +D+        V KP + GSS G+I +        DL+           LIE +V G E 
Sbjct: 147 LDAAFAEYGKLVAKPAQDGSSFGLIFVNSTN----DLVAVRDAAKEQPYLIEPFVTGAEA 202

Query: 178 TCGVMGDA-----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
           TC V+        +L   EI +P    + Y  KY S  +  + PA+   ++  E+QRLA 
Sbjct: 203 TCAVLEQTDGSLIALPPIEI-IPDRGAFDYHSKYLSNKTQEICPARFAPEVIAEIQRLAI 261

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
            AH+A+ CRG +RSDF+     +   ++E N  PGMT  S++P+  A  G  F E L   
Sbjct: 262 AAHKALSCRGYTRSDFIVS--DKGPVFIETNTLPGMTASSLYPKALAAQGIGFVEFLHGQ 319

Query: 293 VE 294
           V+
Sbjct: 320 VD 321


>gi|226330096|ref|ZP_03805614.1| hypothetical protein PROPEN_04009 [Proteus penneri ATCC 35198]
 gi|225200891|gb|EEG83245.1| hypothetical protein PROPEN_04009 [Proteus penneri ATCC 35198]
          Length = 366

 Score =  122 bits (305), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 86/346 (24%), Positives = 164/346 (47%), Gaps = 55/346 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD--------------------- 39
           +A++ GG S+E +VSL S K   + L+   F +  I ++                     
Sbjct: 6   VAIIFGGKSTEHQVSLQSAKNIINELDRTKFDLCLIGINEQGQWHEYSETDYLLNSDNPK 65

Query: 40  --------RSVGLVLAHLKP--------------DLAFNVLHGNFGEDGLVQAILELLEI 77
                   R+V ++   +K               D+ F ++HG +GEDG +Q +L ++++
Sbjct: 66  TISLSKPLRAVAIIPGSVKKQFISLEDGQALPQIDVVFPIVHGAYGEDGTLQGLLHMIDM 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIK 131
           PY    I++SA  MDK  +K+++   G+ V P I +    ++  H       +  P  IK
Sbjct: 126 PYVGPNIMSSAACMDKDITKRLLDGAGLAVAPFITIMAHQINDIHYNEMVRQLGLPLFIK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+GI  +  ++     L    ++ +  ++++E  + G E+ C V+G+   +V+ 
Sbjct: 186 PANLGSSVGISKVNNEEEFNAAL--EMAFEYDLKVIVESAIVGREIECAVLGNEDPEVSP 243

Query: 192 IA--VPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               V    FY+Y  KY   +    V+PA +  +    ++++A  A++ + C G++R D 
Sbjct: 244 CGEIVLNDAFYAYNTKYIDEDGAKVVVPAVMDENTSLHIRQVALKAYRVLNCLGMARVD- 302

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           +F     +V   EIN  PG T +S++P++   AG  ++ L+  ++E
Sbjct: 303 VFLTQDNRVVINEINTLPGFTNISMYPKLWQSAGLGYQSLITKLIE 348


>gi|227874805|ref|ZP_03992958.1| D-alanine--D-alanine ligase [Mobiluncus mulieris ATCC 35243]
 gi|306818097|ref|ZP_07451828.1| D-alanine-D-alanine ligase [Mobiluncus mulieris ATCC 35239]
 gi|227844580|gb|EEJ54736.1| D-alanine--D-alanine ligase [Mobiluncus mulieris ATCC 35243]
 gi|304649061|gb|EFM46355.1| D-alanine-D-alanine ligase [Mobiluncus mulieris ATCC 35239]
          Length = 374

 Score =  122 bits (305), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 78/267 (29%), Positives = 137/267 (51%), Gaps = 29/267 (10%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+   +LHG +GEDG +Q + E++ +PYT  G+ ASAL MDK  +KQV+   G+PV    
Sbjct: 107 DVVMPLLHGPYGEDGTIQGLCEMVGVPYTGCGVTASALCMDKGYTKQVLERGGIPVGRFH 166

Query: 112 LVNRFTMDSQHLISP--------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
           ++  +    +    P        P  +KP + GSSLG+  ++  +     ++ +    H 
Sbjct: 167 VITDYAWRHRESAVPAEVLDFGLPVFVKPSRAGSSLGVSRVEAWEEFEAAVVAAR--RHD 224

Query: 164 DQLLIEQYVDGI-ELTCGVMGDASLDVTEIAVPKSDF------------YSYELKYSSLN 210
            ++++E  V G  E+ C V     L+  + A P++ F            Y +E KY + +
Sbjct: 225 PKVIVEAGVVGAREVECAV-----LEGRDGAAPRTAFPGEVVMKQTPGMYDFESKYFAQD 279

Query: 211 STHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
           +  + +PA+IP  + K +   A  A + +   G++R DF +   + ++   EIN  PGMT
Sbjct: 280 AVSLSIPAQIPELVAKRICDYARQAFELVSGEGLARVDFFYVEETGRLILNEINTMPGMT 339

Query: 270 PVSIFPEMAAYAGYSFRELLLWMVEDA 296
           P S+FP M  + G  +++L+  ++E A
Sbjct: 340 PFSLFPGMWEHMGMPYQDLVTELIEIA 366


>gi|289426939|ref|ZP_06428663.1| D-ala D-ala ligase N-terminal domain protein [Propionibacterium
           acnes J165]
 gi|289159879|gb|EFD08059.1| D-ala D-ala ligase N-terminal domain protein [Propionibacterium
           acnes J165]
 gi|313807118|gb|EFS45613.1| D-ala D-ala ligase [Propionibacterium acnes HL087PA2]
 gi|313819314|gb|EFS57028.1| D-ala D-ala ligase [Propionibacterium acnes HL046PA2]
 gi|313819963|gb|EFS57677.1| D-ala D-ala ligase [Propionibacterium acnes HL036PA1]
 gi|313823244|gb|EFS60958.1| D-ala D-ala ligase [Propionibacterium acnes HL036PA2]
 gi|313824968|gb|EFS62682.1| D-ala D-ala ligase [Propionibacterium acnes HL063PA1]
 gi|314924802|gb|EFS88633.1| D-ala D-ala ligase [Propionibacterium acnes HL036PA3]
 gi|314960640|gb|EFT04742.1| D-ala D-ala ligase [Propionibacterium acnes HL002PA2]
 gi|314978058|gb|EFT22152.1| D-ala D-ala ligase [Propionibacterium acnes HL072PA2]
 gi|314986219|gb|EFT30311.1| D-ala D-ala ligase [Propionibacterium acnes HL005PA2]
 gi|314989565|gb|EFT33656.1| D-ala D-ala ligase [Propionibacterium acnes HL005PA3]
 gi|315084861|gb|EFT56837.1| D-ala D-ala ligase [Propionibacterium acnes HL027PA2]
 gi|315086034|gb|EFT58010.1| D-ala D-ala ligase [Propionibacterium acnes HL002PA3]
 gi|315088247|gb|EFT60223.1| D-ala D-ala ligase [Propionibacterium acnes HL072PA1]
 gi|327327929|gb|EGE69703.1| D-alanine--D-alanine ligase [Propionibacterium acnes HL096PA3]
 gi|327443970|gb|EGE90624.1| D-ala D-ala ligase [Propionibacterium acnes HL013PA2]
 gi|328754950|gb|EGF68566.1| D-ala D-ala ligase [Propionibacterium acnes HL020PA1]
 gi|332675776|gb|AEE72592.1| D-alanine--D-alanine ligase [Propionibacterium acnes 266]
          Length = 365

 Score =  122 bits (305), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 82/259 (31%), Positives = 127/259 (49%), Gaps = 20/259 (7%)

Query: 53  LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
           + F VLHG FGEDG +Q +LE+  + Y   G+ ASA  MDK  +K ++S  GV V P ++
Sbjct: 100 VVFPVLHGPFGEDGTIQGLLEMAGVRYVGCGVAASANCMDKHLTKMILSEAGVLVGPYVV 159

Query: 113 V--NRFTMDSQHLISP------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164
           V  + +  D   ++        P  +KP +GGSS+GI  +   +   L+     +  H  
Sbjct: 160 VRDHEWREDRNAILKAASRLEYPVFVKPARGGSSIGISRVTSPEH--LETAIEMAREHDS 217

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKS-------DFYSYELKYSSLNSTHVLPA 217
           ++LIEQ + G E+ C V+          +VP          FY +E KY S      + A
Sbjct: 218 KVLIEQGIRGREIECSVIDGRHGAAPRASVPGEIVVHDPDGFYDFEAKYLSGEQKASVQA 277

Query: 218 KIPLD--IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275
              LD    + VQ++A  A Q +GC G++R D    P    V+  E N  PG T  S FP
Sbjct: 278 HANLDDATRRRVQKVAIKAFQVLGCEGLARIDTFVTP-DGAVYVNEPNTMPGFTRSSGFP 336

Query: 276 EMAAYAGYSFRELLLWMVE 294
            M   +G ++ +++  ++E
Sbjct: 337 LMWQASGMTYAQIVSELIE 355


>gi|220931741|ref|YP_002508649.1| D-alanine--D-alanine ligase [Halothermothrix orenii H 168]
 gi|254767731|sp|B8CWI5|DDL_HALOH RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|219993051|gb|ACL69654.1| D-alanine--D-alanine ligase [Halothermothrix orenii H 168]
          Length = 343

 Score =  122 bits (305), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 91/338 (26%), Positives = 157/338 (46%), Gaps = 50/338 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------------------- 40
           + VL GG S E EVS+ S ++     +   +KV    + +                    
Sbjct: 6   LGVLFGGRSQEHEVSVMSARSVVKMAKKEKYKVIPFGITKKGQWVGPEESWNILNNGINE 65

Query: 41  -----------SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
                      SV + L H K D+ F VLHG +GEDG +Q  L+ L+IPY  + +L+SA 
Sbjct: 66  VKASKDRCITESVRVFLDH-KLDIVFPVLHGPYGEDGKLQGFLDCLDIPYIGASVLSSAA 124

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSLG 140
            MDK   K + S   +P     +  +  +++            +  P  +KP   GSS+G
Sbjct: 125 GMDKEIMKNLFSYHKIPQARYRVYRQNHLENGLDGIISEIDRFLGWPCFVKPANMGSSIG 184

Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKS 197
           +  +     +   L +   ++   +L+ E++V+G E+ C V+G+  ++ +   EI +P  
Sbjct: 185 VSKVHSPGEVKKALEKGFYYDR--KLIFEEFVEGREIECSVLGNDQVEASLPGEI-LPGK 241

Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
           +FY YE KY    +  V+PA +   +  + + LA  A +AI   G +R DF     +  V
Sbjct: 242 EFYDYEAKYKDNKTRLVIPASLDESVIDKARNLAIKAFKAIDGNGFARVDFFLK--NNGV 299

Query: 258 FWL-EINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             + EIN  PG T  S++P++    G ++ +L+  ++E
Sbjct: 300 LLVNEINTIPGFTQYSMYPKLWEATGLNYPDLIDKLIE 337


>gi|241205059|ref|YP_002976155.1| D-alanyl-alanine synthetase A [Rhizobium leguminosarum bv. trifolii
           WSM1325]
 gi|240858949|gb|ACS56616.1| D-alanine/D-alanine ligase [Rhizobium leguminosarum bv. trifolii
           WSM1325]
          Length = 358

 Score =  122 bits (305), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 98/344 (28%), Positives = 165/344 (47%), Gaps = 55/344 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           +AVL GG S+E EVS+ S      AL+   +    + + R    +L              
Sbjct: 10  IAVLFGGRSAEHEVSVLSATNVMGALKPEKYDAVPVFITREGQWLLSNFEDGILATPSSG 69

Query: 47  -----------------AHLKP------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                            AH  P      D+ F VLHG  GEDG VQ   E+  +P    G
Sbjct: 70  TEICLVPGGHGRMLAMPAHGAPHELARIDILFPVLHGPHGEDGSVQGATEVARVPLAGCG 129

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSL 139
           IL SA ++DK  +K+++ + G+PV  ++ ++     S    +  +  P  IKP + GSS+
Sbjct: 130 ILGSAAALDKDIAKRLLRAAGLPVARAVTIHEGAAPSLAALEGELGLPLFIKPARQGSSV 189

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV-----TEIAV 194
           G+  +   Q     L +  ++ H   LL E++V G E+   V+ D + ++      EI  
Sbjct: 190 GVAKVHASQEFAPALTE--AFRHDRTLLAEEFVRGREIEFSVLEDTAGELFVSRPGEIVP 247

Query: 195 PKSD-FYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            +S  FYSY+ KY     +   +PA++P +I   ++ +A  A +A+GC G++R DF    
Sbjct: 248 AESHGFYSYDAKYIDEKGAVLKVPAELPQEIETAMRDVASKAFRAVGCDGMARIDFF--- 304

Query: 253 LSRKVFWL--EINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           L+  + +L  EIN  PG T +S++ +  A +G ++ E++  +V+
Sbjct: 305 LTDDMQFLVNEINTIPGFTDISMYSKAMAASGVTYAEIIDRLVD 348


>gi|307700634|ref|ZP_07637662.1| D-ala D-ala ligase N-terminal domain protein [Mobiluncus mulieris
           FB024-16]
 gi|307614164|gb|EFN93405.1| D-ala D-ala ligase N-terminal domain protein [Mobiluncus mulieris
           FB024-16]
          Length = 374

 Score =  122 bits (305), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 78/267 (29%), Positives = 137/267 (51%), Gaps = 29/267 (10%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+   +LHG +GEDG +Q + E++ +PYT  G+ ASAL MDK  +KQV+   G+PV    
Sbjct: 107 DVVMPLLHGPYGEDGTIQGLCEMVGVPYTGCGVTASALCMDKGYTKQVLERGGIPVGRFH 166

Query: 112 LVNRFTMDSQHLISP--------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
           ++  +    +    P        P  +KP + GSSLG+  ++  +     ++ +    H 
Sbjct: 167 VITDYAWRHRESAVPAEVLDLGLPVFVKPSRAGSSLGVSRVEAWEEFEAAVVAAR--RHD 224

Query: 164 DQLLIEQYVDGI-ELTCGVMGDASLDVTEIAVPKSDF------------YSYELKYSSLN 210
            ++++E  V G  E+ C V     L+  + A P++ F            Y +E KY + +
Sbjct: 225 PKVIVEAGVVGAREVECAV-----LEGRDGAAPRTAFPGEVVMKQTPGLYDFESKYFAQD 279

Query: 211 STHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
           +  + +PA+IP  + K +   A  A + +   G++R DF +   + ++   EIN  PGMT
Sbjct: 280 AVSLSIPAQIPELVAKRICDYARQAFELVSGEGLARVDFFYVEETGRLILNEINTMPGMT 339

Query: 270 PVSIFPEMAAYAGYSFRELLLWMVEDA 296
           P S+FP M  + G  +++L+  ++E A
Sbjct: 340 PFSLFPGMWEHMGMPYQDLVTELIEIA 366


>gi|218681670|ref|ZP_03529471.1| D-alanine-D-alanine ligase protein [Rhizobium etli CIAT 894]
          Length = 320

 Score =  122 bits (305), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 83/253 (32%), Positives = 134/253 (52%), Gaps = 14/253 (5%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+ F VLHG  GEDG VQ   E+  +P    GIL SA ++DK  +K+++ + G+PV  ++
Sbjct: 60  DILFPVLHGPHGEDGSVQGAAEVARVPLAGCGILGSAAALDKDIAKRLLRAAGLPVARAV 119

Query: 112 LVNRFTMDSQHLISP----PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL 167
            ++     S  ++      P  IKP + GSS+G+  +   Q     L Q  ++ H   LL
Sbjct: 120 TIHAGAAPSLSVLEGELGLPLFIKPARQGSSVGVAKVHASQEFAAALEQ--AFRHDRTLL 177

Query: 168 IEQYVDGIELTCGVM--GDASLDVT---EIAVPKS-DFYSYELKYSSLNSTHV-LPAKIP 220
            E++V G E+   V+   D  L V+   EI   +S  FY+Y  KY   N   + +PA +P
Sbjct: 178 AEEFVAGREIEFSVLEDTDGKLFVSRPGEIVPAESHGFYNYNAKYIDENGAALKVPADLP 237

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280
            +I   ++ +A  A +A+GC G++R DF      R V   E+N  PG T +S++ +  A 
Sbjct: 238 SEIEAAMRDMAAKAFRAVGCDGMARVDFFLTSDMRFVIN-ELNTIPGFTDISMYSKAMAA 296

Query: 281 AGYSFRELLLWMV 293
           +G S+ E++  +V
Sbjct: 297 SGVSYAEIIDRLV 309


>gi|58696727|ref|ZP_00372272.1| D-alanine-D-alanine ligase [Wolbachia endosymbiont of Drosophila
           simulans]
 gi|58537095|gb|EAL60215.1| D-alanine-D-alanine ligase [Wolbachia endosymbiont of Drosophila
           simulans]
          Length = 175

 Score =  122 bits (305), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 61/145 (42%), Positives = 94/145 (64%), Gaps = 1/145 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +A+L GG S ERE+SL SGKA   AL+   +   +IDVD ++   L  + P LAF  LHG
Sbjct: 7   IAILSGGFSCEREISLMSGKAVKKALDSLSYNAIEIDVDSNIAEKLKKINPGLAFIALHG 66

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG +Q +LE+L I YTHSG++ASA++++K+ SK +  S  +      +++R  +  
Sbjct: 67  PYGEDGCIQGLLEILGIKYTHSGVMASAVAINKVMSKHIFRSLNIDTPKGYVISREDVLK 126

Query: 121 QHL-ISPPYVIKPLKGGSSLGIIVI 144
            ++ I  PYV+KP+  GSS+G+ +I
Sbjct: 127 NNIKIDYPYVLKPINEGSSIGVYII 151


>gi|304389915|ref|ZP_07371872.1| D-alanine-D-alanine ligase [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
 gi|315657167|ref|ZP_07910051.1| D-alanine-D-alanine ligase [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
 gi|304326808|gb|EFL94049.1| D-alanine-D-alanine ligase [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
 gi|315492270|gb|EFU81877.1| D-alanine-D-alanine ligase [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
          Length = 375

 Score =  122 bits (305), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 76/262 (29%), Positives = 134/262 (51%), Gaps = 23/262 (8%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+   +LHG +GEDG +Q + E++ +PYT  G+ AS+  MDK  +K ++   G+PV    
Sbjct: 108 DVVMPLLHGPYGEDGTIQGLCEMVGVPYTGCGVGASSNGMDKGCAKVLLEHGGIPVGRYH 167

Query: 112 LVNRFTMDSQH----LISP------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN 161
           +++ F  D +H    + +P      P  +KP + GSSLG+  +   Q     ++ +    
Sbjct: 168 VISDF--DWRHRADEVPTPILSWGLPVFVKPARAGSSLGVTRVDSWQDFEAAVVAAR--R 223

Query: 162 HGDQLLIEQYVDGI-ELTCGVMGDASLDVTEIAVPKS-------DFYSYELKYSSLNSTH 213
           H  ++++E  V G  E+ C V+   +        P           Y ++ KY +  +  
Sbjct: 224 HDPKVIVEAAVQGAREIECAVLEGRAGGAPRTTPPGEVVMVSTPGMYDFQSKYFANEAVQ 283

Query: 214 V-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
           + +PA+IP  +  ++Q  A  A Q +G  G+SR DF + P + ++   E+N  PGMTP S
Sbjct: 284 LQIPAQIPAGVAAQIQSYARQAFQILGGEGLSRVDFFYVPDTGEIILNEVNTMPGMTPYS 343

Query: 273 IFPEMAAYAGYSFRELLLWMVE 294
           ++P M    G S+ +L+  ++E
Sbjct: 344 LYPGMWENVGLSYTDLVTELIE 365


>gi|331002650|ref|ZP_08326165.1| hypothetical protein HMPREF0491_01027 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330407063|gb|EGG86567.1| hypothetical protein HMPREF0491_01027 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 349

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 94/300 (31%), Positives = 151/300 (50%), Gaps = 22/300 (7%)

Query: 8   ISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGL 67
           I+S  + S  + K  A  L DA  K   +++D         +  D+ F VLHG FGEDG 
Sbjct: 53  IASMEDGSWINSKINAYILPDAIKKCIIVEIDGE----YKEVHVDVVFPVLHGLFGEDGT 108

Query: 68  VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV------PVCPSILVNRFTMDSQ 121
           +Q +LEL  IPY   G+LASA+ MDK+ +K VV   G+      PV    +   F    +
Sbjct: 109 IQGLLELSGIPYVGCGVLASAVGMDKLYTKLVVDKLGIRQADYEPVIDYEVREDFKRVVK 168

Query: 122 HL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +      P  +KP   GSS G+      + +   +L+  + NH  ++L+E+ + G E+ 
Sbjct: 169 RIEDRFDYPVFVKPSNAGSSKGVSKASNREELEKGILE--ALNHDRKVLVEETIVGHEVE 226

Query: 179 CGVMGD----ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
           CGV+G      +  V EI    + FY Y+ KY  L+S  +L +++P  + +++   A   
Sbjct: 227 CGVLGRPGEVMASGVGEIK-SAATFYDYDAKY-KLDSLTLLDSQLPNGVREKLPECAKKI 284

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             A+   G+SR DF F     ++ + EIN  PG T +S++P +   AG   +EL+  ++E
Sbjct: 285 FTALDGFGLSRVDF-FAKEDGEIVFNEINTMPGFTAISMYPMLFEAAGIGKKELVDRLIE 343


>gi|289427317|ref|ZP_06429030.1| D-ala D-ala ligase N-terminal domain protein [Propionibacterium
           acnes J165]
 gi|289159247|gb|EFD07438.1| D-ala D-ala ligase N-terminal domain protein [Propionibacterium
           acnes J165]
 gi|313765048|gb|EFS36412.1| D-ala D-ala ligase [Propionibacterium acnes HL013PA1]
 gi|313792590|gb|EFS40676.1| D-ala D-ala ligase [Propionibacterium acnes HL110PA1]
 gi|313803591|gb|EFS44773.1| D-ala D-ala ligase [Propionibacterium acnes HL110PA2]
 gi|313806833|gb|EFS45331.1| D-ala D-ala ligase [Propionibacterium acnes HL087PA2]
 gi|313814241|gb|EFS51955.1| D-ala D-ala ligase [Propionibacterium acnes HL025PA1]
 gi|313815703|gb|EFS53417.1| D-ala D-ala ligase [Propionibacterium acnes HL059PA1]
 gi|313817621|gb|EFS55335.1| D-ala D-ala ligase [Propionibacterium acnes HL046PA2]
 gi|313821552|gb|EFS59266.1| D-ala D-ala ligase [Propionibacterium acnes HL036PA1]
 gi|313824504|gb|EFS62218.1| D-ala D-ala ligase [Propionibacterium acnes HL036PA2]
 gi|313826848|gb|EFS64562.1| D-ala D-ala ligase [Propionibacterium acnes HL063PA1]
 gi|313829166|gb|EFS66880.1| D-ala D-ala ligase [Propionibacterium acnes HL063PA2]
 gi|313839600|gb|EFS77314.1| D-ala D-ala ligase [Propionibacterium acnes HL086PA1]
 gi|314916192|gb|EFS80023.1| D-ala D-ala ligase [Propionibacterium acnes HL005PA4]
 gi|314917458|gb|EFS81289.1| D-ala D-ala ligase [Propionibacterium acnes HL050PA1]
 gi|314921795|gb|EFS85626.1| D-ala D-ala ligase [Propionibacterium acnes HL050PA3]
 gi|314926258|gb|EFS90089.1| D-ala D-ala ligase [Propionibacterium acnes HL036PA3]
 gi|314930938|gb|EFS94769.1| D-ala D-ala ligase [Propionibacterium acnes HL067PA1]
 gi|314955392|gb|EFS99797.1| D-ala D-ala ligase [Propionibacterium acnes HL027PA1]
 gi|314959137|gb|EFT03239.1| D-ala D-ala ligase [Propionibacterium acnes HL002PA1]
 gi|314961641|gb|EFT05742.1| D-ala D-ala ligase [Propionibacterium acnes HL002PA2]
 gi|314963897|gb|EFT07997.1| D-ala D-ala ligase [Propionibacterium acnes HL082PA1]
 gi|314969105|gb|EFT13203.1| D-ala D-ala ligase [Propionibacterium acnes HL037PA1]
 gi|314979943|gb|EFT24037.1| D-ala D-ala ligase [Propionibacterium acnes HL072PA2]
 gi|314990666|gb|EFT34757.1| D-ala D-ala ligase [Propionibacterium acnes HL005PA3]
 gi|315078970|gb|EFT50982.1| D-ala D-ala ligase [Propionibacterium acnes HL053PA2]
 gi|315081519|gb|EFT53495.1| D-ala D-ala ligase [Propionibacterium acnes HL078PA1]
 gi|315083057|gb|EFT55033.1| D-ala D-ala ligase [Propionibacterium acnes HL027PA2]
 gi|315086591|gb|EFT58567.1| D-ala D-ala ligase [Propionibacterium acnes HL002PA3]
 gi|315087994|gb|EFT59970.1| D-ala D-ala ligase [Propionibacterium acnes HL072PA1]
 gi|315099364|gb|EFT71340.1| D-ala D-ala ligase [Propionibacterium acnes HL059PA2]
 gi|315102294|gb|EFT74270.1| D-ala D-ala ligase [Propionibacterium acnes HL046PA1]
 gi|315107411|gb|EFT79387.1| D-ala D-ala ligase [Propionibacterium acnes HL030PA1]
 gi|315109706|gb|EFT81682.1| D-ala D-ala ligase [Propionibacterium acnes HL030PA2]
 gi|327444492|gb|EGE91146.1| D-ala D-ala ligase [Propionibacterium acnes HL013PA2]
 gi|327454233|gb|EGF00888.1| D-ala D-ala ligase [Propionibacterium acnes HL087PA3]
 gi|327456291|gb|EGF02946.1| D-ala D-ala ligase [Propionibacterium acnes HL083PA2]
 gi|327457435|gb|EGF04090.1| D-ala D-ala ligase [Propionibacterium acnes HL092PA1]
 gi|328757997|gb|EGF71613.1| D-ala D-ala ligase [Propionibacterium acnes HL020PA1]
 gi|328758953|gb|EGF72569.1| D-ala D-ala ligase [Propionibacterium acnes HL025PA2]
          Length = 315

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 90/310 (29%), Positives = 152/310 (49%), Gaps = 20/310 (6%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62
           VL GG+S +R++SL SG+  A AL   G +V + D+D ++   L      + F +LHG  
Sbjct: 7   VLAGGLSHQRDISLKSGRTVAQALRRVGHEVVEADIDSALIETLRANDGAVVFPMLHGGL 66

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFT-M 118
           GE+G +  +L+L+ IPY  S      +S DK  + + V++ G+ V P  +    + F  +
Sbjct: 67  GENGALLEVLQLMGIPYVGSSPATCRISFDKSIASRAVAAAGI-VTPQQVALPHDVFREL 125

Query: 119 DSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
            +Q ++         P ++KP +GGSSLG+  +     +P  +  ++++ + D +++E++
Sbjct: 126 GAQTVMRSIAEKFGLPVIVKPARGGSSLGVTKVDGVDDLPQAV--ANAYAYDDMVVVEEF 183

Query: 172 VDGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227
           + G EL  G++    G   L   EI  P    Y Y   Y+   +    PA I     +  
Sbjct: 184 IVGTELAIGMITTSEGTRVLPAVEIR-PVGGVYDYSAMYTGGETRLTAPADISDTAAQTA 242

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287
             +A +  + +   GISR D + D   R VF LE    PGMT  S+ P     AG    E
Sbjct: 243 TAMARVVQKELDFSGISRVDAIVDESGRPVF-LEAGAAPGMTATSLVPVAMKAAGLDLGE 301

Query: 288 LLLWMVEDAS 297
           +   +V+D +
Sbjct: 302 VCSRLVDDVA 311


>gi|8671343|emb|CAB95026.1| D-alanine-D-alanine ligase [Prochlorococcus marinus]
          Length = 247

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 82/249 (32%), Positives = 127/249 (51%), Gaps = 19/249 (7%)

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-DSQ 121
           GEDG +Q   +L   PY  SG+L SAL MDK+  K   S+ G+P      ++   + D +
Sbjct: 3   GEDGSIQGFFQLTGKPYVGSGVLGSALGMDKIAMKAAFSAAGLPQVNYCEIHSIDLLDKK 62

Query: 122 HL----------ISPPYVIKPLKGGSSLGI--IVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            L          +  P  IKP   GSS+GI     KK+    LDL    +     ++++E
Sbjct: 63  RLSYLIQKIETQLGYPCFIKPANLGSSVGISKAYDKKELLNGLDL----AAQLDSRIVVE 118

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPK--SDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227
           + +   EL C V+G   +  + +   +  SD+Y Y+ KYS  ++  ++PA IP  I KEV
Sbjct: 119 KNIKARELECAVIGKKQIKTSCVGEVRYSSDWYDYDSKYSKNSTKTLIPAPIPEKISKEV 178

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287
           Q L+ LA +AI   GI+R DF +D     ++  EIN  PG T  S++P +   +G    +
Sbjct: 179 QSLSILACKAISAEGIARVDFFYDEEKDSLWINEINTMPGFTEQSMYPMLWDASGIDISQ 238

Query: 288 LLLWMVEDA 296
           L+  ++E A
Sbjct: 239 LVARLIESA 247


>gi|319893032|ref|YP_004149907.1| D-alanine--D-alanine ligase [Staphylococcus pseudintermedius
           HKU10-03]
 gi|317162728|gb|ADV06271.1| D-alanine--D-alanine ligase [Staphylococcus pseudintermedius
           HKU10-03]
 gi|323463913|gb|ADX76066.1| D-alanine--D-alanine ligase [Staphylococcus pseudintermedius ED99]
          Length = 356

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 78/255 (30%), Positives = 137/255 (53%), Gaps = 16/255 (6%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-- 109
           D  F +LHG  GEDG +Q + E+L+IPY  +G+LA++ SMDK+  KQ+ +  G+P  P  
Sbjct: 89  DAVFPLLHGPNGEDGTIQGLFEVLDIPYVGNGVLAASSSMDKLVMKQLFAHRGLPQLPYV 148

Query: 110 SILVNRFTMDSQHLI-------SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
           S L + +    +++I       + P  +KP   GSS+GI   + + ++   + ++  ++ 
Sbjct: 149 SFLRSEYEKYRKNIIKLVHDKLAFPVFVKPANLGSSVGISKCEDEAALIKGIEEAFQFDR 208

Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKI 219
             +L+IEQ VD  E+   V+G+   + T   E+ V    FY Y+ KY        +PA +
Sbjct: 209 --KLVIEQGVDAREIEVAVLGNDYPETTWPGEV-VKDVAFYDYKSKYKDGKVKLAIPADL 265

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279
             D+   ++ +A  A +A  C G+ R+DF F     +++  E N  PG T  S++P++  
Sbjct: 266 DQDVQMTLRNMAVEAFKATDCSGLLRADF-FVTADNQIYINETNAMPGFTAYSMYPKLWE 324

Query: 280 YAGYSFRELLLWMVE 294
             G S+ EL+  +++
Sbjct: 325 NMGVSYSELITKLID 339


>gi|92116839|ref|YP_576568.1| D-alanine--D-alanine ligase [Nitrobacter hamburgensis X14]
 gi|91799733|gb|ABE62108.1| D-alanine--D-alanine ligase [Nitrobacter hamburgensis X14]
          Length = 340

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 95/325 (29%), Positives = 148/325 (45%), Gaps = 48/325 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD----RSVGLVLAHLKP----- 51
           + +L GG + ER VS++S +A   AL +A      I  D    RS  ++L H +P     
Sbjct: 3   ITILFGGSNKERLVSVASAQALHRALPEADLWFWDIRDDVHNVRSE-VLLDHARPFEDEF 61

Query: 52  -----DLAFNV---------------LHGNFGEDGLVQAILELLEIPYTHSGILASALSM 91
                 + F                 LHG   E+G +QA+ EL  IP+T SG  AS L+ 
Sbjct: 62  VPGGTSMPFEQALDRARAEGRVLVLGLHGGRAENGELQAMCELRGIPFTGSGSAASHLAF 121

Query: 92  DKMRSKQVVSSCGVPV---CPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQ 148
           DK+ +K+  +  GV      P   ++R   +   LI+     KP + GSS G+I +   Q
Sbjct: 122 DKVAAKRFAALAGVTTPAGVPLEEIDRAFAEHGRLIA-----KPARDGSSYGLIFVNAKQ 176

Query: 149 SIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA----VPKSDFYSYEL 204
               D +        ++ +IE +V GIE TCGV+  +   V  +     VP    + Y  
Sbjct: 177 ----DFVAVRHAAKTEEYVIEPFVSGIEATCGVLERSDGTVVALPPVEIVPAEGRFDYAS 232

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           KY +  +  + P +    I   +   A  AH+A+ CRG SR+DF+     ++  +LE N 
Sbjct: 233 KYLAQTTQEICPGRFSSSITARIMDHALRAHRALSCRGYSRTDFIV--TGKEPVYLETNT 290

Query: 265 QPGMTPVSIFPEMAAYAGYSFRELL 289
            PG+T  S++P+     G  F + L
Sbjct: 291 LPGLTAASLYPKALKAQGIGFADFL 315


>gi|163789889|ref|ZP_02184325.1| D-alanine--D-alanine ligase [Carnobacterium sp. AT7]
 gi|159874829|gb|EDP68897.1| D-alanine--D-alanine ligase [Carnobacterium sp. AT7]
          Length = 366

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 89/277 (32%), Positives = 141/277 (50%), Gaps = 26/277 (9%)

Query: 37  DVDRSVGLVL--AHLKPDLA--FNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
           D  +S G+++  + LK + A  F VLHG  GEDG VQ + E++ +PY  +G+LASA  MD
Sbjct: 78  DNQQSQGMIIQPSDLKEEDAVIFPVLHGPNGEDGTVQGLFEVISMPYVGAGVLASACGMD 137

Query: 93  KMRSKQVVSSCGVPVCPSILVNR----------FTMDSQHLISPPYVIKPLKGGSSLGII 142
           K+ SKQ+    G+P  P + V +          F      L  P Y IKP   GSS+GI 
Sbjct: 138 KIISKQLFQQAGLPQVPYVPVRKAEWLNDKEIVFKQCEGTLFYPMY-IKPANLGSSVGI- 195

Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKS----- 197
             K +    L      +  +  ++++EQ ++  E+   V+G+   D   I+VP       
Sbjct: 196 -SKAENRDELIAAIELALRYDRRVVVEQGIEAREIEVAVLGN---DDIHISVPGELVKSV 251

Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
           DFY YE KY + +    +PA I  D+   ++  A  A QA+   G+SR DF     + +V
Sbjct: 252 DFYDYESKYINNDVVLQIPALISEDVNARLREYAVRAFQALDGSGLSRCDFFLTS-NDEV 310

Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           F  E+N  PG T  S++P +    G ++ +L+  +++
Sbjct: 311 FINEVNTMPGFTQFSMYPTLWKNTGLNYGDLVEELIQ 347


>gi|326334583|ref|ZP_08200794.1| D-alanine-D-alanine ligase [Capnocytophaga sp. oral taxon 338 str.
           F0234]
 gi|325693352|gb|EGD35280.1| D-alanine-D-alanine ligase [Capnocytophaga sp. oral taxon 338 str.
           F0234]
          Length = 327

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 92/327 (28%), Positives = 159/327 (48%), Gaps = 42/327 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGF-----------------KVSQIDVDRS-V 42
           +AVLMGG S E EVSL S       L+ + +                 +  +  VD++  
Sbjct: 4   IAVLMGGYSRESEVSLKSAATVVEHLDKSKYASYPILITKEKWVYMDSQNQEFVVDKNDF 63

Query: 43  GLVLAHLKP--DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
            L+L   K   D AFN +HG  GEDG +QA   L+ IP T   + ASAL+ +K     V+
Sbjct: 64  SLILKGKKITFDCAFNAIHGTPGEDGYLQAYFALVGIPITGCSMYASALTFNKRDMLSVL 123

Query: 101 SSCGVPVCPSILVNRFTMDSQHL--------ISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152
           +  G+P   +  +N+     +H         +  P  +K  + GSS G+     ++ I  
Sbjct: 124 NPYGIPRAKAYYLNQ----GEHFSVREIIKTVGLPCFVKANRSGSSFGVYKAYNEKDI-- 177

Query: 153 DLLQSSSWNHGDQLLIEQYVDGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSS 208
           D     ++   ++++IE+++ G E++ GV+        L +TEI V ++DF+ Y+ KY  
Sbjct: 178 DDAIEKAFEVDNEIIIEEFLKGTEVSVGVITYRGKKKVLPITEI-VSENDFFDYQAKYQG 236

Query: 209 LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268
             S  + PA++     ++V+ LA   +  +  +G SRS+++   +  + + LE+N  PG+
Sbjct: 237 -RSKEITPARLTAQEKEKVEALALKVYDLLQMKGFSRSEYIL--VGGEPYLLEMNTTPGL 293

Query: 269 TPVSIFPEMAAYAGYSFRELLLWMVED 295
           +  SI P+ A  AG +   L    +E+
Sbjct: 294 SNASILPQQAKAAGITLANLFDNAIEE 320


>gi|289425456|ref|ZP_06427233.1| D-ala D-ala ligase N-terminal domain protein [Propionibacterium
           acnes SK187]
 gi|289154434|gb|EFD03122.1| D-ala D-ala ligase N-terminal domain protein [Propionibacterium
           acnes SK187]
 gi|313764084|gb|EFS35448.1| D-ala D-ala ligase [Propionibacterium acnes HL013PA1]
 gi|313792389|gb|EFS40484.1| D-ala D-ala ligase [Propionibacterium acnes HL110PA1]
 gi|313801475|gb|EFS42724.1| D-ala D-ala ligase [Propionibacterium acnes HL110PA2]
 gi|313816433|gb|EFS54147.1| D-ala D-ala ligase [Propionibacterium acnes HL059PA1]
 gi|313838238|gb|EFS75952.1| D-ala D-ala ligase [Propionibacterium acnes HL086PA1]
 gi|314914945|gb|EFS78776.1| D-ala D-ala ligase [Propionibacterium acnes HL005PA4]
 gi|314917830|gb|EFS81661.1| D-ala D-ala ligase [Propionibacterium acnes HL050PA1]
 gi|314919720|gb|EFS83551.1| D-ala D-ala ligase [Propionibacterium acnes HL050PA3]
 gi|314930037|gb|EFS93868.1| D-ala D-ala ligase [Propionibacterium acnes HL067PA1]
 gi|314956384|gb|EFT00696.1| D-ala D-ala ligase [Propionibacterium acnes HL027PA1]
 gi|314957256|gb|EFT01359.1| D-ala D-ala ligase [Propionibacterium acnes HL002PA1]
 gi|314963173|gb|EFT07273.1| D-ala D-ala ligase [Propionibacterium acnes HL082PA1]
 gi|314967705|gb|EFT11804.1| D-ala D-ala ligase [Propionibacterium acnes HL037PA1]
 gi|315078236|gb|EFT50279.1| D-ala D-ala ligase [Propionibacterium acnes HL053PA2]
 gi|315098176|gb|EFT70152.1| D-ala D-ala ligase [Propionibacterium acnes HL059PA2]
 gi|315101671|gb|EFT73647.1| D-ala D-ala ligase [Propionibacterium acnes HL046PA1]
 gi|315109490|gb|EFT81466.1| D-ala D-ala ligase [Propionibacterium acnes HL030PA2]
 gi|327452374|gb|EGE99028.1| D-ala D-ala ligase [Propionibacterium acnes HL087PA3]
 gi|327452749|gb|EGE99403.1| D-ala D-ala ligase [Propionibacterium acnes HL083PA2]
 gi|327453502|gb|EGF00157.1| D-ala D-ala ligase [Propionibacterium acnes HL092PA1]
 gi|328752616|gb|EGF66232.1| D-ala D-ala ligase [Propionibacterium acnes HL025PA2]
 gi|328753831|gb|EGF67447.1| D-ala D-ala ligase [Propionibacterium acnes HL087PA1]
          Length = 365

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 82/259 (31%), Positives = 126/259 (48%), Gaps = 20/259 (7%)

Query: 53  LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
           + F VLHG FGEDG +Q +LE+  + Y   G+ ASA  MDK  +K ++S  GV V P ++
Sbjct: 100 VVFPVLHGPFGEDGTIQGLLEMAGVRYVGCGVAASANCMDKHLTKMILSEAGVLVGPYVV 159

Query: 113 V--------NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164
           V            + +   +  P  +KP +GGSS+GI  +   +   L+     +  H  
Sbjct: 160 VRDHEWREDRNAVLKAASRLEYPVFVKPARGGSSIGISRVTSPEH--LETAIEMAREHDS 217

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKS-------DFYSYELKYSSLNSTHVLPA 217
           ++LIEQ + G E+ C V+          +VP          FY +E KY S      + A
Sbjct: 218 KVLIEQGIRGREIECSVIDGRHGAAPRASVPGEIVVHDPDGFYDFEAKYLSGEQKASVQA 277

Query: 218 KIPLD--IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275
              LD    + VQ++A  A Q +GC G++R D  F  L   V+  E N  PG T  S FP
Sbjct: 278 HANLDDATRRRVQKVAIKAFQVLGCEGLARID-TFVTLDGAVYVNEPNTMPGFTRSSGFP 336

Query: 276 EMAAYAGYSFRELLLWMVE 294
            M   +G ++ +++  ++E
Sbjct: 337 LMWQASGMTYAQIVSELIE 355


>gi|295130895|ref|YP_003581558.1| D-ala D-ala ligase N-terminal domain protein [Propionibacterium
           acnes SK137]
 gi|291376113|gb|ADD99967.1| D-ala D-ala ligase N-terminal domain protein [Propionibacterium
           acnes SK137]
 gi|313771885|gb|EFS37851.1| D-ala D-ala ligase [Propionibacterium acnes HL074PA1]
 gi|313809610|gb|EFS47346.1| D-ala D-ala ligase [Propionibacterium acnes HL083PA1]
 gi|313829929|gb|EFS67643.1| D-ala D-ala ligase [Propionibacterium acnes HL007PA1]
 gi|314972902|gb|EFT16999.1| D-ala D-ala ligase [Propionibacterium acnes HL053PA1]
 gi|314975674|gb|EFT19769.1| D-ala D-ala ligase [Propionibacterium acnes HL045PA1]
 gi|314984142|gb|EFT28234.1| D-ala D-ala ligase [Propionibacterium acnes HL005PA1]
 gi|315080938|gb|EFT52914.1| D-ala D-ala ligase [Propionibacterium acnes HL078PA1]
 gi|315095733|gb|EFT67709.1| D-ala D-ala ligase [Propionibacterium acnes HL038PA1]
 gi|327330066|gb|EGE71819.1| D-alanine--D-alanine ligase [Propionibacterium acnes HL096PA2]
 gi|327442699|gb|EGE89353.1| D-ala D-ala ligase [Propionibacterium acnes HL043PA1]
 gi|327443902|gb|EGE90556.1| D-ala D-ala ligase [Propionibacterium acnes HL043PA2]
 gi|328761412|gb|EGF74938.1| D-alanine--D-alanine ligase [Propionibacterium acnes HL099PA1]
          Length = 365

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 82/259 (31%), Positives = 127/259 (49%), Gaps = 20/259 (7%)

Query: 53  LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
           + F VLHG FGEDG +Q +LE+  + Y   G+ ASA  MDK  +K ++S  GV V P ++
Sbjct: 100 VVFPVLHGPFGEDGTIQGLLEMAGVRYVGCGVAASANCMDKHLTKMILSEAGVLVGPYVV 159

Query: 113 V--NRFTMDSQHLISP------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164
           V  + +  D   ++        P  +KP +GGSS+GI  +   +   L+     +  H  
Sbjct: 160 VRDHEWREDRNAVLKAVSRLEYPVFVKPARGGSSIGISRVTSPEH--LETAIEMAREHDS 217

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKS-------DFYSYELKYSSLNSTHVLPA 217
           ++LIEQ + G E+ C V+          +VP          FY +E KY S      + A
Sbjct: 218 KVLIEQGIRGREIECSVIDGRHGAAPRASVPGEIVVHDPDGFYDFEAKYLSGEQKASVQA 277

Query: 218 KIPLD--IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275
              LD    + VQ++A  A Q +GC G++R D    P    V+  E N  PG T  S FP
Sbjct: 278 HANLDDATRRRVQKVAIKAFQVLGCEGLARIDTFVTP-DGAVYVNEPNTMPGFTRSSGFP 336

Query: 276 EMAAYAGYSFRELLLWMVE 294
            M   +G ++ +++  ++E
Sbjct: 337 LMWQASGMTYAQIVSELIE 355


>gi|160947009|ref|ZP_02094212.1| hypothetical protein PEPMIC_00971 [Parvimonas micra ATCC 33270]
 gi|158447393|gb|EDP24388.1| hypothetical protein PEPMIC_00971 [Parvimonas micra ATCC 33270]
          Length = 357

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 84/322 (26%), Positives = 151/322 (46%), Gaps = 48/322 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS-----VGLVLAHLKPD--- 52
           + +L GG S+E E+S+ + K+  + L+   +K+  I VD+      +G    +++ +   
Sbjct: 4   LYLLYGGKSTEHEISVLTAKSVINNLDRKKYKIFPIYVDKCGRWNYLGKNTKNIENEKEL 63

Query: 53  -------------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87
                                    + F  +HG F EDG +Q   +++++ Y  + +L+S
Sbjct: 64  VVEGFGNVADSISNFFAKDFVNENAIFFPAMHGTFSEDGTIQGFFDIMDLTYVGNNVLSS 123

Query: 88  ALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ---------HLISPPYVIKPLKGGSS 138
           A+ MDK  +  V +  G+      LV ++  +             I     IKP   GSS
Sbjct: 124 AVCMDKGTANDVFAGNGILQPEYYLVTKYEFNKNKDLQIKNILEKIGEVSFIKPCNAGSS 183

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVP 195
           +G+  + K + I   L+++  + + +++L+E+ V G EL   VMG+  L  +    + V 
Sbjct: 184 VGVTKVTKKEEIEPALIEA--FKYDNRVLVEEAVIGDELQVLVMGNNILKASLPGGVKVT 241

Query: 196 KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255
           + +F+ YE KY    + H++P  +  +  KE+Q +A  A+    C+G +R D       R
Sbjct: 242 R-EFFDYEAKYFDETTDHIIPWDLTDEEIKEIQSVAKRAYAVTNCKGFARVDIFVRDSDR 300

Query: 256 KVFWLEINVQPGMTPVSIFPEM 277
           K+   EIN  PGMT VS+ P M
Sbjct: 301 KMLVNEINTIPGMTAVSMAPAM 322


>gi|313827268|gb|EFS64982.1| D-ala D-ala ligase [Propionibacterium acnes HL063PA2]
          Length = 365

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 82/259 (31%), Positives = 126/259 (48%), Gaps = 20/259 (7%)

Query: 53  LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
           + F VLHG FGEDG +Q +LE+  + Y   G+ ASA  MDK  +K ++S  GV V P ++
Sbjct: 100 VVFPVLHGPFGEDGTIQGLLEMAGVRYVGCGVAASANCMDKHLTKMILSEAGVLVGPYVV 159

Query: 113 V--------NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164
           V            + +   +  P  +KP +GGSS+GI  +   +   L+     +  H  
Sbjct: 160 VRDHEWREDRNAVLKAASRLEYPVFVKPARGGSSIGISRVTSPEH--LETAIEMAREHDS 217

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKS-------DFYSYELKYSSLNSTHVLPA 217
           ++LIEQ + G E+ C V+          +VP          FY +E KY S      + A
Sbjct: 218 KVLIEQGIRGREIECSVIDGRHGAAPRASVPGEIVVHDPDGFYDFEAKYLSGEQKASVQA 277

Query: 218 KIPLD--IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275
              LD    + VQ++A  A Q +GC G++R D  F  L   V+  E N  PG T  S FP
Sbjct: 278 HANLDDATRRRVQKVAIKAFQVLGCEGLARID-TFVTLDGAVYVNEPNTMPGFTRSSGFP 336

Query: 276 EMAAYAGYSFRELLLWMVE 294
            M   +G ++ +++  ++E
Sbjct: 337 LMWQASGMTYAQIVSELIE 355


>gi|261879907|ref|ZP_06006334.1| D-alanine-D-alanine ligase [Prevotella bergensis DSM 17361]
 gi|270333419|gb|EFA44205.1| D-alanine-D-alanine ligase [Prevotella bergensis DSM 17361]
          Length = 333

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 89/328 (27%), Positives = 156/328 (47%), Gaps = 38/328 (11%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-----------------DRS-- 41
           +A++ GG S E +VS+ S +   S  +   + +  +DV                 DR+  
Sbjct: 8   IAIVCGGDSPEHDVSIRSAQGLYSFFDKDRYNIYIVDVRGQDWHVAFDDGDIAKIDRNDF 67

Query: 42  --VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
             +G     +  D A+  +HG  GE+G++Q   +L+ +PY+ SG+L  +++ DK      
Sbjct: 68  SFIGQDGKAVVFDYAYITIHGTPGENGIMQGYFDLIHLPYSTSGVLVESMTFDKYVLNNY 127

Query: 100 VSSCGVPVCPSILVNRFTMDSQHLISP----PYVIKPLKGGSSLGIIVIK-KDQSIPLDL 154
           + + GV V  SIL+ R     +  +      P  +KP   GSS G+  +K  DQ  P   
Sbjct: 128 LRAFGVNVADSILLRRDEAYDEAAVEARLGMPVFVKPSANGSSFGVSKVKCADQLAP--- 184

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV----TEIAVPKSDFYSYELKYSSLN 210
              +++   D+++IE +++G E++ G        V    TE+ V K++F+ Y+ KY+   
Sbjct: 185 ALRTAFMESDEVMIEGFLEGTEISVGCYKTREKSVVFPATEV-VTKNEFFDYDAKYNG-Q 242

Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF---DPLSRKVFWLEINVQPG 267
              + PA++  +  K V       +  + C GI R D++    D  + K+  LEIN  PG
Sbjct: 243 VKEITPARLSPETTKRVAEETSRIYDILRCNGIIRIDYIISKDDEGNDKINMLEINTTPG 302

Query: 268 MTPVSIFPEMAAYAGYSFRELLLWMVED 295
           MT  S  P+    AG   +++L  +VE+
Sbjct: 303 MTETSFIPQQVRAAGLDIKDVLSDIVEN 330


>gi|50842843|ref|YP_056070.1| D-alanine--D-alanine ligase [Propionibacterium acnes KPA171202]
 gi|50840445|gb|AAT83112.1| D-alanine--D-alanine ligase [Propionibacterium acnes KPA171202]
 gi|313813315|gb|EFS51029.1| D-ala D-ala ligase [Propionibacterium acnes HL025PA1]
 gi|315105985|gb|EFT77961.1| D-ala D-ala ligase [Propionibacterium acnes HL030PA1]
          Length = 365

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 81/259 (31%), Positives = 125/259 (48%), Gaps = 20/259 (7%)

Query: 53  LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
           + F VLHG FGEDG +Q +LE+  + Y   G+ ASA  MDK  +K ++S  GV V P ++
Sbjct: 100 VVFPVLHGPFGEDGTIQGLLEMAGVRYVGCGVAASANCMDKHLTKMILSEAGVLVGPYVV 159

Query: 113 V--------NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164
           V            + +   +  P  +KP +GGSS+GI  +   +   L+     +  H  
Sbjct: 160 VRDHEWREDRNAVLKAASRLEYPVFVKPARGGSSIGISRVTSPEH--LETAIEMAREHDS 217

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKS-------DFYSYELKYSSLNSTHVLPA 217
           ++LIEQ + G E+ C V+          +VP          FY +E KY S      + A
Sbjct: 218 KVLIEQGIRGREIECSVIDGRHGAAPRASVPGEIVVHDPDGFYDFEAKYLSGEQKASVQA 277

Query: 218 KIPLD--IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275
              LD    + VQ++A  A Q +GC G++R D    P    V+  E N  PG T  S FP
Sbjct: 278 HANLDDATRRRVQKVAIKAFQVLGCEGLARIDTFVTP-DGAVYVNEPNTMPGFTRSSGFP 336

Query: 276 EMAAYAGYSFRELLLWMVE 294
            M   +G ++ +++  ++E
Sbjct: 337 LMWQASGMTYAQIVSELIE 355


>gi|289424720|ref|ZP_06426503.1| D-ala D-ala ligase N-terminal domain protein [Propionibacterium
           acnes SK187]
 gi|289155417|gb|EFD04099.1| D-ala D-ala ligase N-terminal domain protein [Propionibacterium
           acnes SK187]
          Length = 315

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 90/310 (29%), Positives = 152/310 (49%), Gaps = 20/310 (6%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62
           VL GG+S +R++SL SG+  A AL   G +V + D+D ++   L      + F +LHG  
Sbjct: 7   VLAGGLSHQRDISLKSGRTVAQALRRVGHEVVEADIDSALIETLRANDGAVVFPMLHGGL 66

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFT-M 118
           GE+G +  +L+L+ IPY  S      +S DK  + + V++ G+ V P  +    + F  +
Sbjct: 67  GENGALLEVLQLMGIPYVGSSPATCRISFDKSIASRAVAAAGI-VTPQQVALPHDVFREL 125

Query: 119 DSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
            +Q ++         P ++KP +GGSSLG+  +     +P  +  ++++ + D +++E++
Sbjct: 126 GAQTVMRSIAEKFGLPVIVKPARGGSSLGVTKVDGVDDLPQAV--ANAYAYDDMVVVEEF 183

Query: 172 VDGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227
           + G EL  G++    G   L   EI  P    Y Y   Y+   +    PA I     +  
Sbjct: 184 IVGTELAIGMITTSEGTRVLPAVEIR-PVGGVYDYSAMYTGGETRLTAPAGISDTAAQTA 242

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287
             +A +  + +   GISR D + D   R VF LE    PGMT  S+ P     AG    E
Sbjct: 243 TAMARVVQKELDFSGISRVDAIVDESGRPVF-LEAGAAPGMTATSLVPVAMKAAGLDLGE 301

Query: 288 LLLWMVEDAS 297
           +   +V+D +
Sbjct: 302 VCSRLVDDVA 311


>gi|298241035|ref|ZP_06964842.1| D-alanine/D-alanine ligase [Ktedonobacter racemifer DSM 44963]
 gi|297554089|gb|EFH87953.1| D-alanine/D-alanine ligase [Ktedonobacter racemifer DSM 44963]
          Length = 348

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 105/338 (31%), Positives = 166/338 (49%), Gaps = 51/338 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASAL----------------------------EDAGFK 32
           +A+L GG S E  +S+ S +  A  L                            E+   +
Sbjct: 6   VAILFGGCSEEHPISVKSAQEVAKHLDIEKYEPFYIGITKSGAWKLCDGPGANWENNNCR 65

Query: 33  VSQIDVDRSV-GLVLAH------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
            + +  DRSV GL++        ++ D+   VLHG  GEDG +Q +LEL  IPY    I 
Sbjct: 66  PAMLSPDRSVHGLLVLEQGQYKTIRLDMVLPVLHGKLGEDGAMQGLLELSGIPYVGCDIQ 125

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIV 143
           +SAL MDK  +  VV + G+   P+  I+     +D+  L   P V+KP + GSS G+  
Sbjct: 126 SSALCMDKSLAYIVVRNAGI-ATPNFWIVTADEDIDADRL-PYPVVVKPARSGSSFGVSK 183

Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD-----VTEIAVPKSD 198
           + + + + L  ++++   +  ++LIE+ V G E+ C ++G+  LD     V +I +    
Sbjct: 184 VSRKEEL-LSAVETAR-QYDSKVLIEEAVVGSEVGCAILGN-DLDVIVGEVDQIRLSHGF 240

Query: 199 FYSYEL---KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255
           F  ++    +  S NST ++PA I  +    VQ+ A   ++ +GCRG+SR D +F     
Sbjct: 241 FRIHQENNPESGSENSTVIVPADISAEARLLVQQTAKAIYRTLGCRGLSRVD-MFLKEDG 299

Query: 256 KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           KV   E+N  PGMT  S +P M A AG  F E++  MV
Sbjct: 300 KVVLNEVNTLPGMTSYSRYPRMMAGAGLPFAEVIDRMV 337


>gi|60391958|gb|AAX19284.1| D-alanine:D-lactate ligase [Paenibacillus thiaminolyticus]
          Length = 343

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 93/332 (28%), Positives = 154/332 (46%), Gaps = 47/332 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +A+L GG S E +VS+ S +  A+ +++  ++   I + +S G+     KP         
Sbjct: 6   VAILFGGCSEEHDVSVKSAREIAANIDNEKYEPLYIGITKS-GVWKMCEKPCAEWENSNC 64

Query: 52  ---------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84
                                      D+AF+ +H   GEDG +Q + EL  IPY    I
Sbjct: 65  YSAVLSPDKKMHGLLVKKNHEYEIHHVDVAFSGMHSKSGEDGSIQGLFELSGIPYVGCDI 124

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
            +SA+ MDK  +  +  + G+ +    ++N+    +    + P  +KP + GSS G  V 
Sbjct: 125 QSSAICMDKSLTYTIAKNAGIAIPEFWVINKDDKPAADTFTYPVFVKPARSGSSYG--VK 182

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL----DVTEIAVPKSDFY 200
           K + +  LD    S+  +  ++LIEQ V G E+ C V+G++S     +V +I +    F 
Sbjct: 183 KVNVADELDAAIESARQYDSKILIEQAVLGCEVGCAVLGNSSELIVGEVDQIRLQHGIFR 242

Query: 201 SY---ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
            +   E +  S N+   +PA +  +    +Q  A   ++A+GCRG+SR D       R V
Sbjct: 243 IHQEAEPEKGSENAVITIPADLSAEERGRIQETAKKIYKALGCRGLSRVDMFLQDNGRIV 302

Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
              E+N  PG T  S +P M A AG +  EL+
Sbjct: 303 L-NEVNTLPGFTSYSRYPRMMAAAGITLPELI 333


>gi|158318856|ref|YP_001511364.1| D-alanine--D-alanine ligase [Frankia sp. EAN1pec]
 gi|158114261|gb|ABW16458.1| D-alanine--D-alanine ligase [Frankia sp. EAN1pec]
          Length = 348

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 84/250 (33%), Positives = 126/250 (50%), Gaps = 12/250 (4%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           DLA  VLHG  GEDG +Q +LEL  IPY    + +SAL MDK  +  V    G+      
Sbjct: 92  DLALPVLHGRLGEDGAMQGLLELSGIPYVGCDVQSSALCMDKSLAYTVARGAGIATPNFW 151

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
            V         L++ P  +KP + GSS G+  + + +   L     ++  +  ++LIE+ 
Sbjct: 152 TVTANEKVDADLLTYPVFVKPARSGSSFGVSKVSRKEE--LSGAVDTARQYDSKVLIEEA 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPK----SDFYSYELKYS----SLNSTHVLPAKIPLDI 223
           V G E+ C ++G+  LD+T   V +      F+    + +    S NST ++PA I  + 
Sbjct: 210 VVGSEVGCALLGN-DLDLTAGEVDRISLSHGFFRIHQESAPESGSENSTAIVPADISAEA 268

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283
              VQ  A   ++A+GCRG+SR D +F     KV   E+N  PGMT  S +P M A AG 
Sbjct: 269 RSLVQETAKAVYRALGCRGLSRVD-MFLQEDGKVVLNEVNTLPGMTSYSRYPRMMAAAGL 327

Query: 284 SFRELLLWMV 293
              E++  +V
Sbjct: 328 PLAEVIDRLV 337


>gi|302525004|ref|ZP_07277346.1| D-alanylalanine synthetase [Streptomyces sp. AA4]
 gi|302433899|gb|EFL05715.1| D-alanylalanine synthetase [Streptomyces sp. AA4]
          Length = 365

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 98/355 (27%), Positives = 162/355 (45%), Gaps = 64/355 (18%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +AV+ GG SSE  +S  S  +  S L+   F+V  + V  S G VL    P         
Sbjct: 8   VAVVFGGRSSEHTISCLSAGSVISNLDPDRFEVLPVGVTPSGGWVLGTGDPQQLSIRGRE 67

Query: 52  ------------------------------------DLAFNVLHGNFGEDGLVQAILELL 75
                                               D+ F VLHG FGEDG +Q +LEL 
Sbjct: 68  LPSVESGRALVLAGDPTSRELRTVDPGQATEVLGTVDVVFPVLHGAFGEDGTIQGLLELA 127

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR----FTMDSQHLISPPYVIK 131
           ++PY   G+ ASA +MDK  +K+++++ G+PV     + R         +  +  P  +K
Sbjct: 128 DLPYVGPGVFASAAAMDKEYAKKLLAAEGLPVGTYAALRRGQSTLAEADRERLGLPVFVK 187

Query: 132 PLKGGSSLGIIVIKK--DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG------ 183
           P + GSS+GI  +    D    ++L + +      ++L+E  V G E+ CGV+       
Sbjct: 188 PSRAGSSVGISRVADWADLDAAIELARRTD----PKVLVEAAVRGREVECGVLEFPDGRV 243

Query: 184 DASL--DVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241
           +ASL  ++  +A  +  +Y +E KY   ++   +PAK+   +   ++ +A  A +A+ C+
Sbjct: 244 EASLPAEIRVLAEGEDAWYDFETKYLGEDAELDIPAKLDDALTDRLRAMAVEAFRALDCQ 303

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           G++R DF        V   E+N  PG T  S +P+M    G  +  LL  +++ A
Sbjct: 304 GLARVDFFVTEEGDLVI-NEVNTMPGFTTKSAYPKMWEVTGVDYPTLLSTLIDTA 357


>gi|218672834|ref|ZP_03522503.1| D-alanine/D-alanine ligase [Rhizobium etli GR56]
          Length = 289

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 80/254 (31%), Positives = 138/254 (54%), Gaps = 14/254 (5%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+ F VLHG  GEDG VQ + ++  +P    GIL SA ++DK  +K+++ + G+PV  ++
Sbjct: 29  DMLFPVLHGLHGEDGSVQGVAQVARVPLAGCGILGSAAALDKEIAKRLLRAAGLPVARAV 88

Query: 112 LVNRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL 167
            ++  T  S    +  +  P  IKP++ GSS+G+  +   Q     L +  ++ H   LL
Sbjct: 89  TIHEGTTPSLAALEGELGLPLFIKPVRQGSSVGVAKVHASQEFAGALAE--AFRHDRTLL 146

Query: 168 IEQYVDGIELTCGVMGDASLDV-----TEIAVPKS-DFYSYELKY-SSLNSTHVLPAKIP 220
            E+++ G E+   V+ DA+  +      EI   +S  FYSY+ KY     +   +PA++P
Sbjct: 147 AEEFIAGREIEFSVLEDAAGKLFVSRPGEIVPAESHGFYSYDAKYIDETGAALKVPAELP 206

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280
            ++   ++  A  A +A+GC G++R DF      R V   E+N  PG T +S++ +  A 
Sbjct: 207 PEVEAAMRDAAAEAFRAVGCDGMARVDFFLTSDMRFVIN-ELNTIPGFTDISMYSKAMAA 265

Query: 281 AGYSFRELLLWMVE 294
           +G S+ E++  +VE
Sbjct: 266 SGVSYAEVIDRLVE 279


>gi|50843773|ref|YP_057000.1| D-alanine--D-alanine ligase B [Propionibacterium acnes KPA171202]
 gi|50841375|gb|AAT84042.1| D-alanine--D-alanine ligase B [Propionibacterium acnes KPA171202]
 gi|332676729|gb|AEE73545.1| D-alanine--D-alanine ligase [Propionibacterium acnes 266]
          Length = 327

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 90/310 (29%), Positives = 152/310 (49%), Gaps = 20/310 (6%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62
           VL GG+S +R++SL SG+  A AL   G +V + D+D ++   L      + F +LHG  
Sbjct: 19  VLAGGLSHQRDISLKSGRTVAQALRRVGHEVVEADIDSALIETLRANDGAVVFPMLHGGL 78

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFT-M 118
           GE+G +  +L+L+ IPY  S      +S DK  + + V++ G+ V P  +    + F  +
Sbjct: 79  GENGALLEVLQLMGIPYVGSSPATCRISFDKSIASRAVAAAGI-VTPQQVALPHDVFREL 137

Query: 119 DSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
            +Q ++         P ++KP +GGSSLG+  +     +P  +  ++++ + D +++E++
Sbjct: 138 GAQTVMRSIAEKFGLPVIVKPARGGSSLGVTKVDGVDDLPQAV--ANAYAYDDMVVVEEF 195

Query: 172 VDGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227
           + G EL  G++    G   L   EI  P    Y Y   Y+   +    PA I     +  
Sbjct: 196 IVGTELAIGMITTSEGTRVLPAVEIR-PVGGVYDYSAMYTGGETRLTAPADISDTAAQTA 254

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287
             +A +  + +   GISR D + D   R VF LE    PGMT  S+ P     AG    E
Sbjct: 255 TAMARVVQKELDFSGISRVDAIVDESGRPVF-LEAGAAPGMTATSLVPVAMKAAGLDLGE 313

Query: 288 LLLWMVEDAS 297
           +   +V+D +
Sbjct: 314 VCSRLVDDVA 323


>gi|28572416|ref|NP_789196.1| D-alanine--D-alanine ligase A [Tropheryma whipplei TW08/27]
 gi|39930876|sp|Q83I36|DDL_TROW8 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|28410547|emb|CAD66933.1| D-alanine--D-alanine ligase A [Tropheryma whipplei TW08/27]
          Length = 347

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 86/262 (32%), Positives = 131/262 (50%), Gaps = 26/262 (9%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           DL F +LHG FGEDG +Q +L+LL+IPY  SG+ ASA +MDK  +K + S  G+PV P  
Sbjct: 93  DLVFPLLHGVFGEDGTIQGMLDLLDIPYVGSGVFASAAAMDKHYTKILCSHAGIPVLPWY 152

Query: 112 LV-------NR--FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
           L+       NR  F        + P  +KP+  GSS G   +   + +P+ +    +  H
Sbjct: 153 LIKGHAWHKNRDSFLKQISDRFTFPLFVKPVDAGSSFGCTFVDFFEQLPVAI--EHALQH 210

Query: 163 GDQLLIEQYVDGIELTCGVM-GDASLDVTEIAVPK---SDFYSYELKYSSLNSTH-VLPA 217
           G   ++E  +D  E+ C ++  +  L  +E+   K   S FY Y  KY  LN    V+PA
Sbjct: 211 GKSAIVEPALDAPEVFCSLIENNGVLQCSELVFVKHSGSKFYDYSAKY--LNPVEFVIPA 268

Query: 218 KIP-LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPE 276
           +    D Y E+    F     +GCR  +R DF        +   EIN  PG+T  SIFP 
Sbjct: 269 QFDNTDGYAEIASKVFF---ELGCRHYARIDFFV--TESGLVLNEINTSPGLTQKSIFP- 322

Query: 277 MAAYAGYSFRELLLWMVEDASC 298
            +++    + +++  ++  A C
Sbjct: 323 -SSFKSMQYSQVIETILASAYC 343


>gi|227871698|ref|ZP_03990109.1| D-alanine--D-alanine ligase [Oribacterium sinus F0268]
 gi|227842454|gb|EEJ52673.1| D-alanine--D-alanine ligase [Oribacterium sinus F0268]
          Length = 356

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 85/267 (31%), Positives = 136/267 (50%), Gaps = 21/267 (7%)

Query: 47  AHL-KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV----S 101
           +HL K D+ F VLHG  GEDG +Q +LE+  IPY   G+L+SA+SMDK+ +K  V    +
Sbjct: 90  SHLEKIDVVFPVLHGKDGEDGTIQGLLEIARIPYVGCGVLSSAISMDKVYTKMAVEKPLA 149

Query: 102 SCGVPVCPSILVNRFTMDSQHLI--------SPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153
             GV     I   R   ++Q  I        S P  +KP   GSS G+   K  +++   
Sbjct: 150 KIGVRQAKYISFVRSQWENQEKIISKVEAALSYPVFVKPSNAGSSCGVSKAKDREALKKA 209

Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK----SDFYSYELKYSSL 209
           +  + S +   ++L+E+ + G EL C V       V   +V +    ++FY Y+ KY++ 
Sbjct: 210 VENALSVDR--RVLVEESITGRELECAVFSGKEGQVESSSVGEILAAAEFYDYDAKYNNP 267

Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
           +S   L   I  +I +++++ A     A+    +SR DF       +V + EIN  PG T
Sbjct: 268 DSKTELHPDISGEIEEKIRKAAETVFLAVDGFSLSRVDFFLS--GEEVIFNEINTMPGFT 325

Query: 270 PVSIFPEMAAYAGYSFRELLLWMVEDA 296
            +S++P +    GYS  EL+  ++E A
Sbjct: 326 SISMYPMLFKKKGYSIEELVEKLLESA 352


>gi|58201633|gb|AAW66893.1| vancomycin resistance protein C1 [Enterococcus gallinarum]
          Length = 235

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 70/219 (31%), Positives = 124/219 (56%), Gaps = 12/219 (5%)

Query: 41  SVGLVLAHLK--PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQ 98
           S G +L   +  PD+ F VLHG +GEDG +Q +LEL+ +PY    + ASAL M+K    Q
Sbjct: 8   SQGFILGEKRIVPDVLFPVLHGKYGEDGCIQGLLELMNLPYVGCHVAASALCMNKWLLHQ 67

Query: 99  VVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152
           +  + G+   P++L++R+  D   +         P  IKP + GSS GI  +    ++  
Sbjct: 68  LADTMGIASAPTLLLSRYENDPATIDRFIQDHGFPIFIKPNEAGSSKGITKVTDKTALHS 127

Query: 153 DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI-AVPKSD-FYSYELKYSSLN 210
            L  ++++ +G  +LI++ + GIE+ CG++G+  L +    A+   D F+ +E KY  ++
Sbjct: 128 AL--TTAFAYGSTVLIQKAIAGIEIGCGILGNEQLTIGACDAISLVDGFFDFEEKYQLIS 185

Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
           +T  +PA +PL +  +++  A L ++ +G  G++R DF 
Sbjct: 186 ATITVPAPLPLALESQIKEQAQLLYRNLGLTGLARIDFF 224


>gi|28493472|ref|NP_787633.1| D-alanine--D-alanine ligase [Tropheryma whipplei str. Twist]
 gi|39930872|sp|Q83G28|DDL_TROWT RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|28476514|gb|AAO44602.1| D-alanine--D-alanine ligase [Tropheryma whipplei str. Twist]
          Length = 347

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 86/262 (32%), Positives = 131/262 (50%), Gaps = 26/262 (9%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           DL F +LHG FGEDG +Q +L+LL+IPY  SG+ ASA +MDK  +K + S  G+PV P  
Sbjct: 93  DLVFPLLHGVFGEDGTIQGMLDLLDIPYVGSGVFASAAAMDKHYTKILCSHAGIPVLPWY 152

Query: 112 LV-------NR--FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
           L+       NR  F        + P  +KP+  GSS G   +   + +P+ +    +  H
Sbjct: 153 LIKGHAWHKNRDSFLKQISDRFTFPLFVKPVDAGSSFGCTFVDFFEQLPVAI--EHALQH 210

Query: 163 GDQLLIEQYVDGIELTCGVM-GDASLDVTEIAVPK---SDFYSYELKYSSLNSTH-VLPA 217
           G   ++E  +D  E+ C ++  +  L  +E+   K   S FY Y  KY  LN    V+PA
Sbjct: 211 GKSAIVEPALDAPEVFCSLIENNGVLQCSELVFVKHSGSKFYDYSAKY--LNPVEFVIPA 268

Query: 218 KIP-LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPE 276
           +    D Y E+    F     +GCR  +R DF        +   EIN  PG+T  SIFP 
Sbjct: 269 QFDNTDGYAEIASKVFF---ELGCRHYARIDFFV--TESGLVLNEINTSPGLTQKSIFP- 322

Query: 277 MAAYAGYSFRELLLWMVEDASC 298
            +++    + +++  ++  A C
Sbjct: 323 -SSFKSMQYSQVIETILASAYC 343


>gi|229496826|ref|ZP_04390535.1| D-ala D-ala ligase [Porphyromonas endodontalis ATCC 35406]
 gi|229316237|gb|EEN82161.1| D-ala D-ala ligase [Porphyromonas endodontalis ATCC 35406]
          Length = 330

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 92/330 (27%), Positives = 156/330 (47%), Gaps = 47/330 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGF-----KVSQ-----------IDVDR---S 41
           +A++ GG S EREVSL S       ++   F     ++S+           + +DR   S
Sbjct: 8   IAIVAGGYSGEREVSLRSAATIIKDIDRTLFSPYLVRLSRDLWEVQVEDTWLPIDRNHFS 67

Query: 42  VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
             +     + D AF  +HG  GE+GL+Q   ++LEIPY   G+L  +L+ DK      +S
Sbjct: 68  FSMGDKECRFDYAFITIHGTPGENGLLQGYFDMLEIPYNTGGVLCESLTFDKFTCNHYLS 127

Query: 102 SCGVPVCPSILVNRFTMDSQHLISP-------PYVIKPLKGGSSLGII-VIKKDQSIPLD 153
           + G+ +  S    R   D  + +         P  +KP  GGSS+    V   DQ   L 
Sbjct: 128 AFGIRIAAS---ERLFSDIPYQVEEVAKRIPLPVFVKPNAGGSSIATTKVTSMDQ---LA 181

Query: 154 LLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDA--SLDVTEIAVPKSDFYSYELKYSSL 209
           +    ++    ++L+E+ ++G E+T  C ++ +    L +TE+ + K +F+ ++ KY   
Sbjct: 182 VAIQKAFEEAPEVLVERLIEGTEVTSGCYIVNNTPHPLPLTEVVIKKGEFFDFDAKYHG- 240

Query: 210 NSTHVLPAKIPLDIYKEVQ----RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           NS  + PA+I   + +E+Q    R+A L H     +GI R D++ +   +    LE+N  
Sbjct: 241 NSDEITPARISEKLTQELQELTSRIALLLH----AQGIIRVDYIIEADGKPTL-LEVNTT 295

Query: 266 PGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           PGMT  S  P+    AG     +   ++ D
Sbjct: 296 PGMTEASFIPQEIRAAGLELSHIFTAIIND 325


>gi|146342495|ref|YP_001207543.1| D-alanine-D-alanine ligase, affects cell division [Bradyrhizobium
           sp. ORS278]
 gi|146195301|emb|CAL79326.1| D-alanine-D-alanine ligase, affects cell division [Bradyrhizobium
           sp. ORS278]
          Length = 329

 Score =  121 bits (303), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 96/324 (29%), Positives = 151/324 (46%), Gaps = 49/324 (15%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQID--VDRSVGLVL-AHLKP-DLAFNV- 57
           +L GG + ER VS++S KA  +AL +A     + D  V ++ G  L AH KP +  F   
Sbjct: 5   ILFGGSNKERLVSVASAKALHAALPEADLWFWEADDTVQQASGPALVAHAKPFEEPFTAD 64

Query: 58  ------------------------LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDK 93
                                   LHG   E+G +Q + E+  +P+T S   AS L+ DK
Sbjct: 65  GVRIGTLAEALDRARAEDRILVLGLHGGRAENGELQVMCEMRGVPFTGSSSAASHLAFDK 124

Query: 94  MRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPY---VIKPLKGGSSLGIIVIKKDQSI 150
           + +K+     GV     +      +D+       Y   + KP+K GSS G+I +   Q  
Sbjct: 125 VAAKRFAVLGGVTAAEGV-----ALDNAETALARYGKLIAKPVKDGSSFGLIFVNAKQ-- 177

Query: 151 PLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA-----SLDVTEIAVPKSDFYSYELK 205
             DL+   +    ++ LIE +V G E TCGV+  A     +L   EI +P    ++Y  K
Sbjct: 178 --DLVAVKAAAATEEYLIEPFVTGKEATCGVLEQADGSLIALPPIEI-LPADGAFNYFAK 234

Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           Y +  +  + P +   ++   +QR A  AH+A+ C G SR+DF+    +    +LE N  
Sbjct: 235 YLAAATKEICPGRFNPEVTAALQREAIKAHRALSCGGYSRTDFIVS--ADGPVYLETNTL 292

Query: 266 PGMTPVSIFPEMAAYAGYSFRELL 289
           PG+T  S++P+  A  G  F + L
Sbjct: 293 PGLTAASLYPKALAAQGIPFADFL 316


>gi|331701247|ref|YP_004398206.1| D-alanine--D-alanine ligase [Lactobacillus buchneri NRRL B-30929]
 gi|329128590|gb|AEB73143.1| D-alanine--D-alanine ligase [Lactobacillus buchneri NRRL B-30929]
          Length = 376

 Score =  121 bits (303), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 75/255 (29%), Positives = 139/255 (54%), Gaps = 15/255 (5%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP----- 106
           D+ F ++HGN GEDG +Q +L LL  PY  + IL SA+S DK  +K++V   GVP     
Sbjct: 97  DVFFPIIHGNLGEDGTIQGLLRLLHKPYVGTAILGSAMSFDKDITKKIVKLAGVPTTRYE 156

Query: 107 VCPSILVNRFTMDS-QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
           V   +   +++ DS    +     IKP   GSS+GI  ++  +     +    ++ +  +
Sbjct: 157 VITPLTAEQYSYDSLSDELGQTLFIKPANQGSSVGIHKVENAEEYSEGI--RDAFRYDSK 214

Query: 166 LLIEQYVDG-IELTCGVMGDA---SLDVTEIAVPKSD-FYSYELKYSSLNSTHV-LPAKI 219
           +LIE+ ++G  EL   ++G+    +  +  I VPK D FY+Y+ K+   +     +P  I
Sbjct: 215 VLIEEAIEGPEELEISILGNDHPIASKIGAIRVPKDDAFYTYDNKFVDASQVKFDVPVDI 274

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279
             ++ +++  +    ++A+G +G++R D+L      K +  E+N  PG T +S++P++ A
Sbjct: 275 SEELAQQITEMGLTTYRALGLKGMARIDYLVSK-DDKPYMSEVNTLPGFTNISLYPQLFA 333

Query: 280 YAGYSFRELLLWMVE 294
            +G S+ EL+  +++
Sbjct: 334 ASGISYSELIDRLIQ 348


>gi|319938752|ref|ZP_08013116.1| D-alanine-D-alanine ligase [Streptococcus anginosus 1_2_62CV]
 gi|319811802|gb|EFW08068.1| D-alanine-D-alanine ligase [Streptococcus anginosus 1_2_62CV]
          Length = 348

 Score =  121 bits (303), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 96/334 (28%), Positives = 163/334 (48%), Gaps = 51/334 (15%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH-------------- 48
           +L GG S+ER+VS+ S ++   A+    F V    + ++   +                 
Sbjct: 8   LLYGGRSAERKVSVLSAESVMHAINYNKFFVKTYFITQAGDFIKTQEFSSKPADNEKLMT 67

Query: 49  ---------LKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
                    +KP        + F VLHG  GEDG +Q  LE+L++PY    IL+S+++MD
Sbjct: 68  NDSVVESQKIKPSDIYEEGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNILSSSVAMD 127

Query: 93  KMRSKQVVSSCGVPVCPSILV-------NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145
           K+ +K+V++S G+P  P + V        +      +L  P +  KP   GSS+GI    
Sbjct: 128 KITTKRVLASAGIPQVPYVAVIEGENIDEKIAAVEANLTYPVFT-KPSNMGSSVGI---- 182

Query: 146 KDQSIPLDLLQSS---SWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDF 199
             +S   D L+S+   ++ +  ++LIEQ V+  E+  G++ +  +  +   E+ V    F
Sbjct: 183 -SKSENQDELRSALELAFKYDSRVLIEQGVNAREIEVGLLENEGVKSSLPGEV-VKDVAF 240

Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
           Y YE KY     T  +PAK+  D+   +++ A  A  AIG  G++R DF +     ++F 
Sbjct: 241 YDYEAKYIDNKITMDIPAKLSEDVIATMRQYAEKAFHAIGGVGLARCDFFYTD-KGEIFL 299

Query: 260 LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            E+N  PG T  S++P +    G S+ +L+  +V
Sbjct: 300 NELNTMPGFTQWSMYPLLWENMGISYTDLIEKLV 333


>gi|295131866|ref|YP_003582529.1| D-ala D-ala ligase N-terminal domain protein [Propionibacterium
           acnes SK137]
 gi|291376332|gb|ADE00187.1| D-ala D-ala ligase N-terminal domain protein [Propionibacterium
           acnes SK137]
 gi|313771089|gb|EFS37055.1| D-ala D-ala ligase [Propionibacterium acnes HL074PA1]
 gi|313811746|gb|EFS49460.1| D-ala D-ala ligase [Propionibacterium acnes HL083PA1]
 gi|313832280|gb|EFS69994.1| D-ala D-ala ligase [Propionibacterium acnes HL007PA1]
 gi|313832740|gb|EFS70454.1| D-ala D-ala ligase [Propionibacterium acnes HL056PA1]
 gi|314975178|gb|EFT19273.1| D-ala D-ala ligase [Propionibacterium acnes HL053PA1]
 gi|314977587|gb|EFT21682.1| D-ala D-ala ligase [Propionibacterium acnes HL045PA1]
 gi|314985065|gb|EFT29157.1| D-ala D-ala ligase [Propionibacterium acnes HL005PA1]
 gi|315096927|gb|EFT68903.1| D-ala D-ala ligase [Propionibacterium acnes HL038PA1]
 gi|327332479|gb|EGE74214.1| D-alanine--D-alanine ligase B [Propionibacterium acnes HL096PA2]
 gi|327446745|gb|EGE93399.1| D-ala D-ala ligase [Propionibacterium acnes HL043PA2]
 gi|327448814|gb|EGE95468.1| D-ala D-ala ligase [Propionibacterium acnes HL043PA1]
 gi|328759876|gb|EGF73466.1| D-alanine--D-alanine ligase B [Propionibacterium acnes HL099PA1]
          Length = 315

 Score =  121 bits (303), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 90/310 (29%), Positives = 151/310 (48%), Gaps = 20/310 (6%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62
           VL GG+S +R++SL SG+  A AL   G +V + D+D ++   L      + F +LHG  
Sbjct: 7   VLAGGLSHQRDISLKSGRTVAQALRRVGHEVVEADIDSALIETLRANDGAVVFPMLHGGL 66

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFT-M 118
           GE+G +  +L+L+ IPY  S      +S DK  +   V++ G+ V P  +    + F  +
Sbjct: 67  GENGALLEVLQLMGIPYVGSSPATCRISFDKSIASHAVAAAGI-VTPQQVALPHDVFREL 125

Query: 119 DSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
            +Q ++         P ++KP +GGSSLG+  +     +P  +  ++++ + D +++E++
Sbjct: 126 GAQTVMRSIAEKFGLPVIVKPARGGSSLGVTKVDGVDDLPQAV--ANAYAYDDMVVVEEF 183

Query: 172 VDGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227
           + G EL  G++    G   L   EI  P    Y Y   Y+   +    PA I     +  
Sbjct: 184 IVGTELAIGMITTSEGTRVLPAVEIR-PVGGVYDYSAMYTGGETRLTAPADISDTAAQTA 242

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287
             +A +  + +   GISR D + D   R VF LE    PGMT  S+ P     AG    E
Sbjct: 243 TAMARVVQKELDFSGISRVDAIVDESGRPVF-LEAGAAPGMTATSLVPVAMKAAGLDLGE 301

Query: 288 LLLWMVEDAS 297
           +   +V+D +
Sbjct: 302 VCSRLVDDVA 311


>gi|229139253|ref|ZP_04267828.1| D-alanine--D-alanine ligase [Bacillus cereus BDRD-ST26]
 gi|228644312|gb|EEL00569.1| D-alanine--D-alanine ligase [Bacillus cereus BDRD-ST26]
          Length = 248

 Score =  121 bits (303), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 79/248 (31%), Positives = 135/248 (54%), Gaps = 13/248 (5%)

Query: 58  LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR-- 115
           LHG +GEDG VQ  LE L IPY+ S +L+S + MDK  SK+++   G+     I + +  
Sbjct: 4   LHGKYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNISKKILRYEGIETPDWIELTKME 63

Query: 116 -FTMDSQHLISPPYVIKPLKGGSSLGI-IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
              +D    +  P V+KP  GGSS+G+ IV  KD+ I + L     W+   +++IE+Y+ 
Sbjct: 64  DLNVDELDKLGFPLVVKPNSGGSSVGVKIVYDKDELISM-LETVFEWDS--EVVIEKYIK 120

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           G E+TC +     L +  I    ++F+ Y  KY   ++   +  ++P ++ + V + +  
Sbjct: 121 GDEITCSIFDGKQLPIISIR-HAAEFFDYNAKYDDTSTIEEV-IELPAELKERVNKASLA 178

Query: 234 AHQAIGCRGISRSDFLF-DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
            ++A+ C   +R D +  D +    + +EIN  PGMT  S+ P+ AA AG  + +LL  +
Sbjct: 179 CYKALKCSVYARVDMMVKDGIP---YVMEINTLPGMTQASLLPKSAAAAGIEYSKLLDMI 235

Query: 293 VEDASCLR 300
           +E +  +R
Sbjct: 236 IETSLRVR 243


>gi|229015636|ref|ZP_04172626.1| D-alanine--D-alanine ligase [Bacillus cereus AH1273]
 gi|229021828|ref|ZP_04178404.1| D-alanine--D-alanine ligase [Bacillus cereus AH1272]
 gi|228739468|gb|EEL89888.1| D-alanine--D-alanine ligase [Bacillus cereus AH1272]
 gi|228745656|gb|EEL95668.1| D-alanine--D-alanine ligase [Bacillus cereus AH1273]
          Length = 361

 Score =  121 bits (303), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 91/342 (26%), Positives = 161/342 (47%), Gaps = 52/342 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI-------------------DVDR- 40
           + +L GG S+E +VSL +  A   AL    F++  I                   DV+  
Sbjct: 6   LGLLYGGKSAEHQVSLQTALAAIKALNQDKFEIHPIYITEQGQWVRGERIEGEVTDVEAL 65

Query: 41  --------------SVGLVLAHLKP----DLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
                         S  ++ A        D+ F +LHG  GEDG VQ +LEL+ IPY  +
Sbjct: 66  KMSGAENAISPLSLSTEIIPAETSEENAIDVIFPLLHGPNGEDGTVQGLLELMNIPYVGN 125

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPL 133
           G+LAS+  MDK+  K + +  G+         R   +          +  +  P  +KP 
Sbjct: 126 GVLASSAGMDKVVMKNIFAEAGLKQAKYASFIRSAWEKNREEAYDKVEEKLGYPCFVKPA 185

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
             GSS+GI   K  + +     ++  ++   ++++E+ + G E+  GV+G+     + + 
Sbjct: 186 NLGSSVGINKCKDREELENAFEEAFQFDR--KIIVEENIVGREVEVGVLGNDEPKCSVVG 243

Query: 194 --VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
             VPK DFY Y+ KY   ++  ++PA++  +    ++R A +A Q++   G++R+DF F 
Sbjct: 244 EIVPKKDFYDYKSKYIDGDTALIIPAEMTEEESDVIKRDAIVAFQSLDGAGLTRADF-FL 302

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
               +V+  E+N  PG TP S+FP +  + G  + +L+  ++
Sbjct: 303 TKDGEVYINEVNTMPGFTPFSMFPLLWQHTGLPYPKLIEELI 344


>gi|327334103|gb|EGE75818.1| D-alanine--D-alanine ligase B [Propionibacterium acnes HL096PA3]
          Length = 315

 Score =  121 bits (303), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 90/310 (29%), Positives = 152/310 (49%), Gaps = 20/310 (6%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62
           VL GG+S +R++SL SG+  A AL   G +V + D+D ++   L      + F +LHG  
Sbjct: 7   VLAGGLSHQRDISLKSGRTVAQALRRVGHEVVEADIDSALIETLRANDGAVVFPMLHGGL 66

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFT-M 118
           GE+G +  +L+L+ IPY  S      +S DK  + + V++ G+ V P  +    + F  +
Sbjct: 67  GENGALLEVLQLMGIPYVGSSPAPCRISFDKSIASRAVAAAGI-VTPQQVALPHDVFREL 125

Query: 119 DSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
            +Q ++         P ++KP +GGSSLG+  +     +P  +  ++++ + D +++E++
Sbjct: 126 GAQTVMRSIAEKFGLPVIVKPARGGSSLGVTKVDGVDDLPQAV--ANAYAYDDMVVVEEF 183

Query: 172 VDGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227
           + G EL  G++    G   L   EI  P    Y Y   Y+   +    PA I     +  
Sbjct: 184 IVGTELAIGMITTSEGTRVLPAVEIR-PVGGVYDYSAMYTGGETRLTAPADISDTAAQTA 242

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287
             +A +  + +   GISR D + D   R VF LE    PGMT  S+ P     AG    E
Sbjct: 243 TAMARVVQKELDFSGISRVDAIVDESGRPVF-LEAGAAPGMTATSLVPVAMKAAGLDLGE 301

Query: 288 LLLWMVEDAS 297
           +   +V+D +
Sbjct: 302 VCSRLVDDVA 311


>gi|314987134|gb|EFT31226.1| D-ala D-ala ligase [Propionibacterium acnes HL005PA2]
          Length = 315

 Score =  121 bits (303), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 90/310 (29%), Positives = 152/310 (49%), Gaps = 20/310 (6%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62
           VL GG+S +R++SL SG+  A AL   G +V + D+D ++   L      + F +LHG  
Sbjct: 7   VLAGGLSHQRDISLKSGRPVAQALRRVGHEVVEADIDSALIETLRANDGAVVFPMLHGGL 66

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFT-M 118
           GE+G +  +L+L+ IPY  S      +S DK  + + V++ G+ V P  +    + F  +
Sbjct: 67  GENGALLEVLQLMGIPYVGSSPATCRISFDKSIASRAVAAAGI-VTPQQVALPHDVFREL 125

Query: 119 DSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
            +Q ++         P ++KP +GGSSLG+  +     +P  +  ++++ + D +++E++
Sbjct: 126 GAQTVMRSIAEKFGLPVIVKPARGGSSLGVTKVDGVDDLPQAV--ANAYAYDDMVVVEEF 183

Query: 172 VDGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227
           + G EL  G++    G   L   EI  P    Y Y   Y+   +    PA I     +  
Sbjct: 184 IVGTELAIGMITTSEGTRVLPAVEIR-PVGGVYDYSAMYTGGETRLTAPADISDTAAQTA 242

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287
             +A +  + +   GISR D + D   R VF LE    PGMT  S+ P     AG    E
Sbjct: 243 TAMARVVQKELDFSGISRVDAIVDESGRPVF-LEAGAAPGMTATSLVPVAMKAAGLDLGE 301

Query: 288 LLLWMVEDAS 297
           +   +V+D +
Sbjct: 302 VCSRLVDDVA 311


>gi|298346320|ref|YP_003719007.1| D-alanine--D-alanine ligase [Mobiluncus curtisii ATCC 43063]
 gi|315654911|ref|ZP_07907816.1| D-alanine-D-alanine ligase [Mobiluncus curtisii ATCC 51333]
 gi|298236381|gb|ADI67513.1| D-alanine--D-alanine ligase [Mobiluncus curtisii ATCC 43063]
 gi|315490872|gb|EFU80492.1| D-alanine-D-alanine ligase [Mobiluncus curtisii ATCC 51333]
          Length = 375

 Score =  121 bits (303), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 76/262 (29%), Positives = 134/262 (51%), Gaps = 23/262 (8%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+   +LHG +GEDG +Q + E++ +PYT  G+ AS+  MDK  +K ++   G+PV    
Sbjct: 108 DVVMPLLHGPYGEDGTIQGLCEMVGVPYTGCGVGASSNGMDKGCAKVLLEHGGIPVGRYH 167

Query: 112 LVNRFTMDSQH----LISP------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN 161
           +++ F  D +H    + +P      P  +KP + GSSLG+  +   Q     ++ +    
Sbjct: 168 VISDF--DWRHRADEVPTPILSWGLPVFVKPARAGSSLGVTRVDSWQDFESAVVAAR--R 223

Query: 162 HGDQLLIEQYVDGI-ELTCGVMGDASLDVTEIAVPKS-------DFYSYELKYSSLNSTH 213
           H  ++++E  V G  E+ C V+   +        P           Y ++ KY +  +  
Sbjct: 224 HDPKVIVEAAVQGAREIECAVLEGRAGGAPRTTPPGEVVMVSTPGMYDFQSKYFANEAVQ 283

Query: 214 V-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
           + +PA+IP  +  ++Q  A  A Q +G  G+SR DF + P + ++   E+N  PGMTP S
Sbjct: 284 LQIPAQIPAGVAAQIQSYARQAFQILGGEGLSRVDFFYVPDTGEIILNEVNTMPGMTPYS 343

Query: 273 IFPEMAAYAGYSFRELLLWMVE 294
           ++P M    G S+ +L+  ++E
Sbjct: 344 LYPGMWENVGLSYTDLVTELIE 365


>gi|315937019|gb|ADU56028.1| hypothetical protein CA37-5 [uncultured organism CA37]
          Length = 345

 Score =  121 bits (303), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 94/323 (29%), Positives = 152/323 (47%), Gaps = 44/323 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALE---------------------------DAGFKV 33
           + ++ GG S E  VS+ S +  A +L+                           + G + 
Sbjct: 6   VGIIFGGSSEEHPVSVKSAQEVAKSLDSEKYEAFWIGITKSGAWRLCAGPGADWETGSRA 65

Query: 34  SQIDVDRSV-GLVL------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           + +  DRSV GL++        ++ DL   VLHG  GEDG +Q +LEL  IPY    + +
Sbjct: 66  AMLSPDRSVHGLLVLEQGRYQEVRLDLVLPVLHGKTGEDGAMQGLLELSGIPYVGCDVQS 125

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           SA+ MDK  +  V  S G+      +V          ++ P  +KP + GSS G+  +  
Sbjct: 126 SAVCMDKSLTYAVAGSAGIATPRFWVVTADEKPDPERLTYPVFVKPARSGSSFGVSKVSH 185

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG-DASL---DVTEIAVPKSDFYSY 202
           ++ +P  +  +  ++   ++LIE+ V G E+ C ++G D  L   +V  +A+    F  +
Sbjct: 186 EEELPSAVETARQFD--SKVLIEEAVAGSEVGCAILGNDGDLVAGEVDRVALSHGFFRIH 243

Query: 203 ---ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
              E +  S NST + PA I  +    VQ  A   ++A+GCRG+SR D +F      +  
Sbjct: 244 QESEPERGSENSTFICPADISAESRSLVQETAKAIYRALGCRGLSRVD-MFLKEDGTIVL 302

Query: 260 LEINVQPGMTPVSIFPEMAAYAG 282
            E+N  PG+T  S +P M A AG
Sbjct: 303 NEVNTLPGLTSYSRYPRMMAAAG 325


>gi|150009273|ref|YP_001304016.1| D-alanyl-alanine synthetase A [Parabacteroides distasonis ATCC
           8503]
 gi|190359198|sp|A6LFD0|DDL_PARD8 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|149937697|gb|ABR44394.1| D-alanine--D-alanine ligase [Parabacteroides distasonis ATCC 8503]
          Length = 330

 Score =  121 bits (303), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 84/325 (25%), Positives = 156/325 (48%), Gaps = 37/325 (11%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFK----------------------VSQIDV 38
           +A++ GG SSE  +SL S     S ++   +                       + + D 
Sbjct: 5   IAIVAGGDSSEIVISLKSADGIYSFIDKDKYNLYIAIVKRDEWAVILPSGEHTPIDKNDF 64

Query: 39  DRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQ 98
                 V  H   D A+  +HG  GEDG +Q   +++ +PY+  G+L SAL+ +K     
Sbjct: 65  SFKENGVTRHF--DFAYITIHGTPGEDGRLQGYFDMIGMPYSSCGMLVSALTFNKYVCNH 122

Query: 99  VVSSCGVPVCPSI-LVNRFTMDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDL 154
            +   GV +  SI L    T+  + +++    P  +KP  GGSS G+  +K+  +I   +
Sbjct: 123 YLKDFGVKIAASIHLFKGETITDEEVVTRLGLPIFVKPNDGGSSFGVTKVKEVSAIQPAI 182

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV----TEIAVPKSDFYSYELKYSSLN 210
             + ++  G ++++E+++DG E+TCG       +V    TE+ V  ++F+ ++ KY+   
Sbjct: 183 --AKAFGEGREVILERFIDGTEVTCGCYKVEGKEVVFPLTEV-VTNNEFFDFDAKYNG-Q 238

Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270
              + PA+I  ++ + +Q      +  +G +G+ R D++  P   +   LEIN  PGMT 
Sbjct: 239 VDEITPARISTELTELIQCETSRIYDILGAKGLIRVDYII-PADGEPVLLEINTTPGMTA 297

Query: 271 VSIFPEMAAYAGYSFRELLLWMVED 295
            S  P+    AG   ++++  ++ED
Sbjct: 298 TSFIPQQVRAAGLDIKDVMTDIIED 322


>gi|87302973|ref|ZP_01085777.1| D-alanine--D-alanine ligase [Synechococcus sp. WH 5701]
 gi|87282469|gb|EAQ74428.1| D-alanine--D-alanine ligase [Synechococcus sp. WH 5701]
          Length = 373

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 84/262 (32%), Positives = 139/262 (53%), Gaps = 20/262 (7%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+ F VLHG  GEDG +Q +  L+++P+  SG+L SAL MDK   K   ++ G+P  P  
Sbjct: 101 DVWFPVLHGPNGEDGTIQGLFALMQVPFVGSGVLGSALGMDKQAMKAAFAAAGLPQVPYA 160

Query: 112 LVNRFTM--DSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
            V    +  D + L+         P  +KP   GSS+GI       S+   L  +++ + 
Sbjct: 161 AVQAADLRHDPEGLLQRLERDLGYPCFVKPANMGSSVGISKASDRSSLLQGLELAAALDP 220

Query: 163 GDQLLIEQYVDGIELTCGVMGDASLD--------VTEIAVPKSDFYSYELKYSSLNSTHV 214
             +L++EQ V   EL C V+G  +          V EI    +D+Y YE KY++  S+ V
Sbjct: 221 --RLVVEQGVTARELECAVLGQGAAAGGGLKASVVGEIRF-SADWYDYETKYTAGLSSTV 277

Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274
           +PA++P  + + ++ +A  A  A+   G++R DF +D  +++++  EIN  PG T  S++
Sbjct: 278 IPAELPEAVSERLRAMALQACAAVATEGLARVDFFYDEAAQRLWLNEINTLPGFTSQSMY 337

Query: 275 PEMAAYAGYSFRELLLWMVEDA 296
           P + A +G    +L+  +VE A
Sbjct: 338 PMLWAASGVPLVDLVHQLVESA 359


>gi|257880772|ref|ZP_05660425.1| D-ala D-ala ligase [Enterococcus faecium 1,230,933]
 gi|257883396|ref|ZP_05663049.1| vancomycin/teicoplanin A-type resistance protein vanA [Enterococcus
           faecium 1,231,502]
 gi|293384649|ref|ZP_06630508.1| D-alanine--D-lactate ligase [Enterococcus faecalis R712]
 gi|293387041|ref|ZP_06631608.1| D-alanine--D-lactate ligase [Enterococcus faecalis S613]
 gi|312907833|ref|ZP_07766821.1| D-ala D-ala ligase [Enterococcus faecalis DAPTO 512]
 gi|312909718|ref|ZP_07768569.1| D-ala D-ala ligase [Enterococcus faecalis DAPTO 516]
 gi|314943761|ref|ZP_07850498.1| D-ala D-ala ligase [Enterococcus faecium TX0133C]
 gi|314949442|ref|ZP_07852781.1| D-ala D-ala ligase [Enterococcus faecium TX0082]
 gi|314996820|ref|ZP_07861831.1| D-ala D-ala ligase [Enterococcus faecium TX0133a01]
 gi|320152792|ref|YP_004172615.1| VanA [Enterococcus faecium]
 gi|257815000|gb|EEV43758.1| D-ala D-ala ligase [Enterococcus faecium 1,230,933]
 gi|257819054|gb|EEV46382.1| vancomycin/teicoplanin A-type resistance protein vanA [Enterococcus
           faecium 1,231,502]
 gi|281335159|gb|ADA62243.1| Vancomycin Teicoplanin A-type resistance protein VanA /
           D-alanine--D-alanine ligase [Enterococcus faecium]
 gi|291078043|gb|EFE15407.1| D-alanine--D-lactate ligase [Enterococcus faecalis R712]
 gi|291083526|gb|EFE20489.1| D-alanine--D-lactate ligase [Enterococcus faecalis S613]
 gi|310626165|gb|EFQ09448.1| D-ala D-ala ligase [Enterococcus faecalis DAPTO 512]
 gi|311289972|gb|EFQ68528.1| D-ala D-ala ligase [Enterococcus faecalis DAPTO 516]
 gi|313589048|gb|EFR67893.1| D-ala D-ala ligase [Enterococcus faecium TX0133a01]
 gi|313597583|gb|EFR76428.1| D-ala D-ala ligase [Enterococcus faecium TX0133C]
 gi|313644171|gb|EFS08751.1| D-ala D-ala ligase [Enterococcus faecium TX0082]
 gi|319739744|gb|ADV60062.1| VanA [Enterococcus faecium]
          Length = 343

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 85/275 (30%), Positives = 137/275 (49%), Gaps = 12/275 (4%)

Query: 22  CASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81
           C SA+     K+  + V ++    + H+  D+AF+ LHG  GEDG +Q + EL  IP+  
Sbjct: 64  CYSAVLSPDKKMHGLLVKKNHEYEINHV--DVAFSALHGKSGEDGSIQGLFELSGIPFVG 121

Query: 82  SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGI 141
             I +SA+ MDK  +  V  + G+      ++N+         + P  +KP + GSS G 
Sbjct: 122 CDIQSSAICMDKSLTYIVAKNAGIATPAFWVINKDDRPVAATFTYPVFVKPARSGSSFG- 180

Query: 142 IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD-ASLDVTEIAVPKSDFY 200
            V K + +  LD    S+  +  ++LIEQ V G E+ C V+G+ A+L V E+   +  + 
Sbjct: 181 -VKKVNSADELDYAIESARQYDSKILIEQAVSGCEVGCAVLGNSAALAVGEVDQIRLQYG 239

Query: 201 SY------ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
            +      E +  S N+   +PA +  +    +Q  A   ++A+GCRG++R D       
Sbjct: 240 IFRIHQEVEPEKGSENAVITVPADLSAEERGRIQETAKKIYKALGCRGLARVDMFLQDNG 299

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           R V   E+N  PG T  S +P M A AG +  EL+
Sbjct: 300 RIVL-NEVNTLPGFTSYSRYPRMMAAAGIALPELI 333


>gi|261340971|ref|ZP_05968829.1| D-alanine--D-alanine ligase A [Enterobacter cancerogenus ATCC
           35316]
 gi|288316835|gb|EFC55773.1| D-alanine--D-alanine ligase A [Enterobacter cancerogenus ATCC
           35316]
          Length = 366

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 90/346 (26%), Positives = 161/346 (46%), Gaps = 55/346 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------------------- 40
           + ++ GG S+E EVSL S K    A++   F V  + +D+                    
Sbjct: 6   VGIVFGGKSAEHEVSLQSAKNIVDAIDKNRFDVVLLGIDKQGQWHVNDASQYLLNADDPA 65

Query: 41  -----------------------SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEI 77
                                  + G   A  + D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  HIALNPSEISVATVPGVVQGQFINAGNAQALAQIDVVFPIVHGTLGEDGSLQGMLRMANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIK 131
           P+  S +L SA  MDK  +K+++   G+ + P + + R   +S         +  P  +K
Sbjct: 126 PFVGSDVLGSAACMDKDMTKRLLRDAGLNIAPFVTLTRANRESYTFAQLSAQLGLPLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  +  +      +  +  ++H  ++++EQ + G E+ C V+G+     + 
Sbjct: 186 PANQGSSVGVSKVSSETQYTEAVRLAFEFDH--KVVVEQGIKGREIECAVLGNDFPQAST 243

Query: 192 IA--VPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               V  SDFYSY+ KY     +  V+PA +   I  +++ +A  A+QA+GC G++R D 
Sbjct: 244 CGEVVLNSDFYSYDTKYIDDQGAQVVVPADLDPAINDKIRAIAVEAYQALGCSGMARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
              P    V   EIN  PG T +S++P++   +G S+ +L+  ++E
Sbjct: 304 FLTP-ENDVVINEINTLPGFTNISMYPKLWQASGLSYPDLITRLLE 348


>gi|322385093|ref|ZP_08058740.1| D-alanine-D-alanine ligase [Streptococcus cristatus ATCC 51100]
 gi|321270717|gb|EFX53630.1| D-alanine-D-alanine ligase [Streptococcus cristatus ATCC 51100]
          Length = 348

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 97/348 (27%), Positives = 167/348 (47%), Gaps = 58/348 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKV--------------------------- 33
           + ++ GG S+EREVS+ S ++   A+    F V                           
Sbjct: 6   LILIYGGRSAEREVSVLSAESVMRAVNYDKFSVKTYFITKAGDFIKTQEFTEKPAADEKL 65

Query: 34  ---SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
              + +DV + V     + +  + F VLHG  GEDG +Q  LE+L +PY    IL+S+++
Sbjct: 66  MTNATVDVSQQVKPSDIYEENAVVFPVLHGPMGEDGSIQGFLEVLRLPYVGCNILSSSVA 125

Query: 91  MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL----------ISPPYVIKPLKGGSSLG 140
           MDK+ +K+++ S G+P  P + V    ++ ++L          ++ P   KP   GSS+G
Sbjct: 126 MDKITTKRILESAGIPQVPYVAV----IEGENLEEKIAEIEEKLTYPIFTKPSNMGSSVG 181

Query: 141 IIVIKKDQSI--PLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVP 195
           I   +  + +   LDL    ++ +  ++LIEQ V+  E+  G++G+  +  T   E+ V 
Sbjct: 182 ISKSENQEELRAALDL----AFKYDSRVLIEQGVNAREIEVGLLGNYDVKSTLPGEV-VK 236

Query: 196 KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255
              FY YE KY     T  +P KI   +   ++  A  A +A+G +G++R DF +     
Sbjct: 237 DVAFYDYEAKYIDNKITMDIPVKISDGVISVMRTNAETAFRALGGQGLARCDFFYTE-EG 295

Query: 256 KVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL---LLWMVEDASCLR 300
            +F  E+N  PG T  S++P +    G  + +L   L+ + E+A   R
Sbjct: 296 DIFLNELNTMPGFTQWSMYPLLWENMGLPYSDLIEKLVNLAEEAFAQR 343


>gi|85714979|ref|ZP_01045964.1| D-alanine--D-alanine ligase [Nitrobacter sp. Nb-311A]
 gi|85698176|gb|EAQ36048.1| D-alanine--D-alanine ligase [Nitrobacter sp. Nb-311A]
          Length = 329

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 92/326 (28%), Positives = 149/326 (45%), Gaps = 50/326 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDA-----GFKVSQIDVDRSVGLVLAHLKP---- 51
           + +L GG + ER VS++S +A   AL +A       +   IDV      +  H +P    
Sbjct: 3   ITILFGGSNKERLVSVASAQALHHALPEADLWFWNHRDEVIDVRPEA--LRNHARPFEDE 60

Query: 52  ----------DLAFNV-----------LHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
                     + A +            LHG   E+G +QA+ EL  IP+T SG  AS L+
Sbjct: 61  FVPAGEGAPLERALDKAKAEGRVLVLGLHGGRAENGELQAMCELRRIPFTGSGSAASHLA 120

Query: 91  MDKMRSKQVVSSCGVPV---CPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147
            DK+ +K+ V+S GVP     P   ++R   +   L++     KP   GSS G+I +   
Sbjct: 121 FDKVAAKRFVASAGVPTPAHIPLQSIDRALAEHGRLVA-----KPACDGSSYGLIFV--- 172

Query: 148 QSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA----VPKSDFYSYE 203
              P D++        +  +IE +V G+E TCGV+  +   V  +     VP    + Y 
Sbjct: 173 -DAPQDIVTVREAAKTEDYVIEPFVSGVEATCGVLEHSDGSVVALPPVEIVPAEGAFDYA 231

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            KY +  +  + P +   +I +++   +  AH A+ CRG SR+DF+     +   +LE N
Sbjct: 232 AKYLAKTTQEICPGRFSPEIAEQIMDYSLRAHLALSCRGYSRTDFIV--TGKGPIYLETN 289

Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELL 289
             PG+T  S++P+        F + L
Sbjct: 290 TLPGLTAASLYPKALHAQNIGFADFL 315


>gi|325860222|ref|ZP_08173347.1| D-ala D-ala ligase N-terminal domain protein [Prevotella denticola
           CRIS 18C-A]
 gi|327312693|ref|YP_004328130.1| D-ala D-ala ligase N-terminal domain-containing protein [Prevotella
           denticola F0289]
 gi|325482309|gb|EGC85317.1| D-ala D-ala ligase N-terminal domain protein [Prevotella denticola
           CRIS 18C-A]
 gi|326944185|gb|AEA20070.1| D-ala D-ala ligase N-terminal domain protein [Prevotella denticola
           F0289]
          Length = 332

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 94/327 (28%), Positives = 155/327 (47%), Gaps = 37/327 (11%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---DRSVGLVLAHLKP------ 51
           +A++ GG SSE +VS+ SG+   S  +   + +  +DV   D  V L    L P      
Sbjct: 8   IAIVCGGDSSEHDVSMRSGQGLYSFFDKERYNIYIVDVKGIDWHVELPDGSLAPIDKNDF 67

Query: 52  -----------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
                      D A+  +HG  GE+G++Q   +LL +PY+ SG+L  A++ DK      +
Sbjct: 68  SFVMGGRRCEFDYAYITIHGQPGENGVMQGYFDLLHLPYSTSGVLVEAMTFDKYVLNNYL 127

Query: 101 SSCGVPVCPSILVNRF----TMDSQHLISPPYVIKPLKGGSSLGIIVIKK-DQSIPLDLL 155
              GV V  SIL+ R       + +  +  P  +KP   GSS G+  +K  DQ  P   +
Sbjct: 128 RGFGVKVADSILLRRGEPYDEAEIERRLGMPCFVKPAADGSSFGVSKVKNADQLAPALRV 187

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV----TEIAVPKSDFYSYELKYSSLNS 211
              ++   D++++E ++DG+E++ GV    +  V    TE+ V  ++F+ Y  KY+    
Sbjct: 188 ---AFMESDEVMVEGFMDGMEISQGVYKTKAKAVVFPATEV-VTSNEFFDYNAKYNG-QV 242

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF--DPLSRKVF-WLEINVQPGM 268
             + PA++  +  + V       +  +   GI R D++   D     V   LEIN  PGM
Sbjct: 243 QEITPARMSPETARRVAAETSRIYDILHANGIIRIDYIISKDKDGNDVINMLEINTTPGM 302

Query: 269 TPVSIFPEMAAYAGYSFRELLLWMVED 295
           T  S  P+    AG   +E+L  +VE+
Sbjct: 303 TATSFIPQQVRAAGLDIKEVLSEIVEN 329


>gi|282853666|ref|ZP_06263003.1| D-ala D-ala ligase N-terminal domain protein [Propionibacterium
           acnes J139]
 gi|282583119|gb|EFB88499.1| D-ala D-ala ligase N-terminal domain protein [Propionibacterium
           acnes J139]
          Length = 365

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 82/259 (31%), Positives = 126/259 (48%), Gaps = 20/259 (7%)

Query: 53  LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
           + F VLHG FGEDG +Q +LE+  + Y   G+ ASA  MDK  +K ++S  GV V P ++
Sbjct: 100 VVFPVLHGPFGEDGTIQGLLEMAGVRYVGCGVAASANCMDKHLTKMILSEAGVLVGPYVV 159

Query: 113 V--NRFTMDSQHLISP------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164
           V  + +  D   ++        P  +KP +GGSS+GI  +   +   L+     +  H  
Sbjct: 160 VRDHEWREDRNAVLKAASRLEYPLFVKPARGGSSIGISRVTSPEH--LETAIEMAREHDS 217

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKS-------DFYSYELKYSSLNSTHVLPA 217
           ++LIEQ + G E+ C V+          +VP          FY +E KY S      + A
Sbjct: 218 KVLIEQGIRGREIECSVIDGRHGAAPRASVPGEIVVHDPDGFYDFEAKYLSGEQKASVQA 277

Query: 218 KIPLD--IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275
              LD    + VQ +A  A Q +GC G++R D    P    V+  E N  PG T  S FP
Sbjct: 278 HANLDDVTRRRVQEVAIKAFQVLGCEGLARIDTFVTP-DGAVYVNEPNTMPGFTRSSGFP 336

Query: 276 EMAAYAGYSFRELLLWMVE 294
            M   +G ++ +++  ++E
Sbjct: 337 LMWQASGMTYAQIVSELIE 355


>gi|109240377|dbj|BAE96112.1| D-Ala:D-Ala ligase [Enterococcus raffinosus]
          Length = 359

 Score =  120 bits (301), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 75/254 (29%), Positives = 131/254 (51%), Gaps = 16/254 (6%)

Query: 53  LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--S 110
           + F VLHG  GEDG +Q  LE L++PY  +G++ SA +MDK+ +K ++ + G+P  P   
Sbjct: 97  IVFPVLHGPNGEDGTIQGFLETLDMPYVGAGVMTSACAMDKIMTKYILQAAGIPQVPYVP 156

Query: 111 ILVNRFTMDSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
           +L N++  + + +          P  IKP   GSS+GI   +  + +   L    ++ + 
Sbjct: 157 VLKNQWKENPKQIFDKCEGTLLYPMFIKPANMGSSVGITRAENREELQNAL--QEAYRYD 214

Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
            + L+EQ +D  E+   V+G+  +  T   EI V +  FY Y  KY        +PA IP
Sbjct: 215 SRALVEQGIDAREIEVAVLGNDDVRTTLPGEI-VKEEAFYDYNAKYIDNTIQMAIPADIP 273

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280
            ++ ++ +  A  A+  +G  G+SR DF F     ++F  E+N  P  T  S++P +   
Sbjct: 274 EEVMQKARDYAKSAYTMLGGSGLSRIDF-FLTNKNELFLNELNTMPDFTEFSMYPLLWEN 332

Query: 281 AGYSFRELLLWMVE 294
            G  + +L+  +++
Sbjct: 333 MGLKYGDLIEELIQ 346


>gi|314983211|gb|EFT27303.1| D-ala D-ala ligase [Propionibacterium acnes HL110PA3]
 gi|315092432|gb|EFT64408.1| D-ala D-ala ligase [Propionibacterium acnes HL110PA4]
          Length = 365

 Score =  120 bits (301), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 82/259 (31%), Positives = 126/259 (48%), Gaps = 20/259 (7%)

Query: 53  LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
           + F VLHG FGEDG +Q +LE+  + Y   G+ ASA  MDK  +K ++S  GV V P ++
Sbjct: 100 VVFPVLHGPFGEDGTIQGLLEMAGVRYVGCGVAASANCMDKHLTKMILSEAGVLVGPYVV 159

Query: 113 V--NRFTMDSQHLISP------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164
           V  + +  D   ++        P  +KP +GGSS+GI  +   +   L+     +  H  
Sbjct: 160 VRDHEWREDRNAVLKAASRLEYPLFVKPARGGSSIGISRVTSPEH--LETAIEMAREHDS 217

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKS-------DFYSYELKYSSLNSTHVLPA 217
           ++LIEQ + G E+ C V+          +VP          FY +E KY S      + A
Sbjct: 218 KVLIEQGIRGREIECSVIDGRHGAAPRASVPGEIVVHDPDGFYDFEAKYLSGEQKASVQA 277

Query: 218 KIPLD--IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275
              LD    + VQ +A  A Q +GC G++R D    P    V+  E N  PG T  S FP
Sbjct: 278 HANLDDVTRRRVQEVAIKAFQVLGCEGLARIDTFVTP-DGAVYVNEPNTMPGFTRSSGFP 336

Query: 276 EMAAYAGYSFRELLLWMVE 294
            M   +G ++ +++  ++E
Sbjct: 337 LMWQASGMTYAQIVSELIE 355


>gi|262049252|ref|ZP_06022127.1| D-alanylalanine synthetase [Staphylococcus aureus D30]
 gi|259162617|gb|EEW47184.1| D-alanylalanine synthetase [Staphylococcus aureus D30]
          Length = 356

 Score =  120 bits (301), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 93/338 (27%), Positives = 160/338 (47%), Gaps = 48/338 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI----DVD-RSVGLVLAHLKP---- 51
           + ++ GG S+E EVS+ + +   +A++   + V  I    D D R    + A +K     
Sbjct: 6   ICIVFGGKSAEHEVSILTAQNVLNAIDKDKYHVDIIYITNDGDWRKQNNITAEIKSTDEL 65

Query: 52  -----------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
                                  D  F +LHG  GEDG +Q + E+L++PY  +G+L++A
Sbjct: 66  HLENGEALEISQLLKESSSGQPYDAVFPLLHGPNGEDGTIQGLFEVLDVPYVGNGVLSAA 125

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-QHLI--------SPPYVIKPLKGGSSL 139
            SMDK+  KQ+    G+P  P I   R   +  +H I        + P  +KP   GSS+
Sbjct: 126 SSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYEHNILKLVNDKLNYPVFVKPANLGSSV 185

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPK 196
           GI     +  +   + ++  ++   +L+IEQ V+  E+   V+G+   + T   E+ V  
Sbjct: 186 GISKCNNEAELKEGIKEAFQFDR--KLVIEQGVNAREIEVAVLGNDYPEATWPGEV-VKD 242

Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256
             FY Y+ KY        +PA +  D+   ++ +A  A +A  C G+ R+DF F     +
Sbjct: 243 VAFYDYKSKYKDGKVQLQIPADLDEDVQLTLRNMALEAFKATDCSGLVRADF-FVTEDNQ 301

Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           ++  E N  PG T  S++P++    G S+ EL+  ++E
Sbjct: 302 IYINETNAMPGFTAFSMYPKLWGNMGLSYPELITKLIE 339


>gi|332521353|ref|ZP_08397809.1| D-alanine/D-alanine ligase [Lacinutrix algicola 5H-3-7-4]
 gi|332043081|gb|EGI79279.1| D-alanine/D-alanine ligase [Lacinutrix algicola 5H-3-7-4]
          Length = 317

 Score =  120 bits (301), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 91/320 (28%), Positives = 155/320 (48%), Gaps = 34/320 (10%)

Query: 5   MGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DRSVGL 44
           MGG SSE ++SL SG    + L    +   +I +                    D SV +
Sbjct: 1   MGGYSSEYQISLKSGNVVYNTLNKEKYNAYRIHIFENKWVYVDANDKEYAIDKNDFSVLV 60

Query: 45  VLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCG 104
               +  D  FN +HG+ GEDG +Q+  +L+ +P T      +AL+ +K     V+   G
Sbjct: 61  NETKITFDCVFNAIHGSPGEDGFMQSYFKLINLPQTSCDAYQAALTFNKRDCLSVLKPYG 120

Query: 105 VPVCPSILVNRFT-MDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160
           +    S  +N    ++   +I+    P  +K  K GSS GI  + + +   L+     ++
Sbjct: 121 ILTAESYYLNLGDIINEDQIINKVGLPCFVKANKAGSSFGISKVHEKEK--LNAAIDIAF 178

Query: 161 NHGDQLLIEQYVDGIELTCGVM---GDAS-LDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216
              ++++IE ++DG E++ GV+   G+   L +TEI V ++DF+ YE KY    S  + P
Sbjct: 179 KEDNEIIIESFLDGTEVSVGVITYKGETKVLPITEI-VSENDFFDYEAKYLG-KSQEITP 236

Query: 217 AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPE 276
           A+I  +   +V  +A   +  +  +G +RS+F+F     +   LE+N  PG+T  SI P+
Sbjct: 237 ARITKEQENKVTTVAKKIYNVLKMKGYTRSEFIFK--DGEPHLLEMNTIPGLTNESILPQ 294

Query: 277 MAAYAGYSFRELLLWMVEDA 296
            AA AG +   L    +E+A
Sbjct: 295 QAAEAGITMEALFDSAIEEA 314


>gi|294814275|ref|ZP_06772918.1| D-alanine--D-alanine ligase [Streptomyces clavuligerus ATCC 27064]
 gi|326442667|ref|ZP_08217401.1| D-alanine--D-alanine ligase [Streptomyces clavuligerus ATCC 27064]
 gi|294326874|gb|EFG08517.1| D-alanine--D-alanine ligase [Streptomyces clavuligerus ATCC 27064]
          Length = 310

 Score =  120 bits (301), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 94/306 (30%), Positives = 145/306 (47%), Gaps = 16/306 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDL--AFNVL 58
           +A+L GG S E + S  S  A   AL + G +   +D+  SV      L PD   AF   
Sbjct: 3   VAILAGGPSPEGQGSFLSADAAGQALRELGHETEVVDI--SVPDFWKRL-PDFEAAFIAG 59

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
           HG + EDG +Q +LE++ +PYT SG+LAS++ M K   K ++ + G+   P   V+R   
Sbjct: 60  HGWYAEDGKLQGLLEVMGLPYTGSGVLASSVGMHKPTFKSLMVAHGIETLPWEPVSRGAT 119

Query: 119 DSQ-----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
            +Q       I  P   KP   G S    +++ D+ +  +LL        D+ + E ++ 
Sbjct: 120 AAQISRVTAGIGLPLFAKPASNGESFEAGIVRSDKDL-RELLAEEGEYSSDEFIAEPFLT 178

Query: 174 GIELTCGVMG-DASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
           G   T GV+  D  ++   +  AV   +FY  E K       +  PA IP  +   +Q L
Sbjct: 179 GNTFTVGVLDIDGKIEALPVLEAVSLREFYDSEAKQDPSLHEYRCPAPIPDSLRDRMQEL 238

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A       GCRG++R DF+     R V  LE+N  PG+T       MA  +G  +R ++ 
Sbjct: 239 AVRVFTVCGCRGVARVDFMLSE-DRPVV-LEVNTVPGLTLQGNLAAMAKASGLGYRRVVE 296

Query: 291 WMVEDA 296
            M++ A
Sbjct: 297 IMLQSA 302


>gi|306520162|ref|ZP_07406509.1| putative D-alanine:D-alanine ligase (putative
           vancomycin/teicoplanin A-type resistance protein)
           [Clostridium difficile QCD-32g58]
          Length = 313

 Score =  120 bits (301), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 76/206 (36%), Positives = 119/206 (57%), Gaps = 14/206 (6%)

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV 105
           + + K D  F VLHG  GEDG VQ + EL  I     G L+SAL MDK +S ++V S G+
Sbjct: 111 IKYTKLDFVFPVLHGKNGEDGTVQGLFELAGIQVIGCGTLSSALCMDKDKSHKLVHSEGI 170

Query: 106 PVCPSILV---NRFTM-DSQHLISPPYVIKPLKGGSSLGI--IVIKKDQSIPLDLLQSSS 159
            V  SIL+   ++F + +    ++ P  IKP++ GSS GI  I  K++  + +DL    +
Sbjct: 171 KVPKSILLKYSDKFNVAELSKDLTYPLFIKPVRAGSSFGISKIYKKEELQVAVDL----A 226

Query: 160 WNHGDQLLIEQYVDGIELTCGVMGDASL---DVTEIAVPKSDFYSYELKYSSLNSTHVLP 216
           + H ++++IE+ +DG E+ C V+G+  L    V EI + K  F+ Y  KY+  +S   +P
Sbjct: 227 FEHDNEVIIEENIDGFEVGCAVLGNDDLLVGRVDEIELSKG-FFDYTEKYTLKSSKIHMP 285

Query: 217 AKIPLDIYKEVQRLAFLAHQAIGCRG 242
           A+I LD  K +Q  A + ++ +GC G
Sbjct: 286 ARIDLDCEKRIQETAKIIYRTLGCSG 311


>gi|116668041|pdb|2I80|A Chain A, Allosteric Inhibition Of Staphylococcus Aureus
           D-Alanine:d- Alanine Ligase Revealed By Crystallographic
           Studies
 gi|116668042|pdb|2I80|B Chain B, Allosteric Inhibition Of Staphylococcus Aureus
           D-Alanine:d- Alanine Ligase Revealed By Crystallographic
           Studies
          Length = 360

 Score =  120 bits (301), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 93/338 (27%), Positives = 160/338 (47%), Gaps = 48/338 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI----DVD-RSVGLVLAHLKP---- 51
           + ++ GG S+E EVS+ + +   +A++   + V  I    D D R    + A +K     
Sbjct: 6   ICIVFGGKSAEHEVSILTAQNVLNAIDKDKYHVDIIYITNDGDWRKQNNITAEIKSTDEL 65

Query: 52  -----------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
                                  D  F +LHG  GEDG +Q + E+L++PY  +G+L++A
Sbjct: 66  HLENGEALEISQLLKESSSGQPYDAVFPLLHGPNGEDGTIQGLFEVLDVPYVGNGVLSAA 125

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-QHLI--------SPPYVIKPLKGGSSL 139
            SMDK+  KQ+    G+P  P I   R   +  +H I        + P  +KP   GSS+
Sbjct: 126 SSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYEHNILKLVNDKLNYPVFVKPANLGSSV 185

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPK 196
           GI     +  +   + ++  ++   +L+IEQ V+  E+   V+G+   + T   E+ V  
Sbjct: 186 GISKCNNEAELKEGIKEAFQFDR--KLVIEQGVNAREIEVAVLGNDYPEATWPGEV-VKD 242

Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256
             FY Y+ KY        +PA +  D+   ++ +A  A +A  C G+ R+DF F     +
Sbjct: 243 VAFYDYKSKYKDGKVQLQIPADLDEDVQLTLRNMALEAFKATDCSGLVRADF-FVTEDNQ 301

Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           ++  E N  PG T  S++P++    G S+ EL+  ++E
Sbjct: 302 IYINETNAMPGFTAFSMYPKLWENMGLSYPELITKLIE 339


>gi|215404965|ref|ZP_03417146.1| D-alanyl-alanine synthetase A [Mycobacterium tuberculosis 02_1987]
          Length = 345

 Score =  120 bits (301), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 72/213 (33%), Positives = 120/213 (56%), Gaps = 16/213 (7%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+ F VLHG +GEDG +Q +LEL  +PY  +G+LASA+ MDK  +K+++++ G+PV    
Sbjct: 96  DVVFPVLHGPYGEDGTIQGLLELAGVPYVGAGVLASAVGMDKEFTKKLLAADGLPVGAYA 155

Query: 112 LVN--RFTMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL 167
           ++   R T+  Q    +  P  +KP +GGSS+G+  +     +P  + ++    H  +++
Sbjct: 156 VLRPPRSTLHRQECERLGLPVFVKPARGGSSIGVSRVSSWDQLPAAVARAR--RHDPKVI 213

Query: 168 IEQYVDGIELTCGV--MGDASLDVT---EIAVP-----KSDFYSYELKYSSLNSTHVLPA 217
           +E  + G EL CGV  M D +L+ +   EI V      +  FY +  KY    +   +PA
Sbjct: 214 VEAAISGRELECGVLEMPDGTLEASTLGEIRVAGVRGREDSFYDFATKYLDDAAELDVPA 273

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
           K+   + + +++LA  A  AI CRG++R DF  
Sbjct: 274 KVDDQVAEAIRQLAIRAFAAIDCRGLARVDFFL 306


>gi|254388377|ref|ZP_05003612.1| D-alanine-D-alanine ligase [Streptomyces clavuligerus ATCC 27064]
 gi|197702099|gb|EDY47911.1| D-alanine-D-alanine ligase [Streptomyces clavuligerus ATCC 27064]
          Length = 312

 Score =  120 bits (301), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 94/306 (30%), Positives = 145/306 (47%), Gaps = 16/306 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDL--AFNVL 58
           +A+L GG S E + S  S  A   AL + G +   +D+  SV      L PD   AF   
Sbjct: 5   VAILAGGPSPEGQGSFLSADAAGQALRELGHETEVVDI--SVPDFWKRL-PDFEAAFIAG 61

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
           HG + EDG +Q +LE++ +PYT SG+LAS++ M K   K ++ + G+   P   V+R   
Sbjct: 62  HGWYAEDGKLQGLLEVMGLPYTGSGVLASSVGMHKPTFKSLMVAHGIETLPWEPVSRGAT 121

Query: 119 DSQ-----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
            +Q       I  P   KP   G S    +++ D+ +  +LL        D+ + E ++ 
Sbjct: 122 AAQISRVTAGIGLPLFAKPASNGESFEAGIVRSDKDL-RELLAEEGEYSSDEFIAEPFLT 180

Query: 174 GIELTCGVMG-DASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
           G   T GV+  D  ++   +  AV   +FY  E K       +  PA IP  +   +Q L
Sbjct: 181 GNTFTVGVLDIDGKIEALPVLEAVSLREFYDSEAKQDPSLHEYRCPAPIPDSLRDRMQEL 240

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A       GCRG++R DF+     R V  LE+N  PG+T       MA  +G  +R ++ 
Sbjct: 241 AVRVFTVCGCRGVARVDFMLSE-DRPVV-LEVNTVPGLTLQGNLAAMAKASGLGYRRVVE 298

Query: 291 WMVEDA 296
            M++ A
Sbjct: 299 IMLQSA 304


>gi|314923643|gb|EFS87474.1| D-ala D-ala ligase [Propionibacterium acnes HL001PA1]
 gi|314967081|gb|EFT11180.1| D-ala D-ala ligase [Propionibacterium acnes HL082PA2]
 gi|315092714|gb|EFT64690.1| D-ala D-ala ligase [Propionibacterium acnes HL060PA1]
 gi|315103813|gb|EFT75789.1| D-ala D-ala ligase [Propionibacterium acnes HL050PA2]
 gi|327327215|gb|EGE68991.1| D-alanine--D-alanine ligase [Propionibacterium acnes HL103PA1]
          Length = 365

 Score =  120 bits (301), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 82/259 (31%), Positives = 126/259 (48%), Gaps = 20/259 (7%)

Query: 53  LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
           + F VLHG FGEDG +Q +LE+  + Y   G+ ASA  MDK  +K ++S  GV V P ++
Sbjct: 100 VVFPVLHGPFGEDGTIQGLLEMAGVRYVGCGVAASANCMDKHLTKMILSEAGVLVGPYVV 159

Query: 113 V--NRFTMDSQHLISP------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164
           V  + +  D   ++        P  +KP +GGSS+GI  +   +   L+     +  H  
Sbjct: 160 VRDHEWREDRNAVLKAASRLEYPLFVKPARGGSSIGISRVTSPEH--LETAIEMAREHDS 217

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKS-------DFYSYELKYSSLNSTHVLPA 217
           ++LIEQ + G E+ C V+          +VP          FY +E KY S      + A
Sbjct: 218 KVLIEQGIRGREIECSVIDGRHGAAPRASVPGEIVVHDPDGFYDFEAKYLSGEQKASVQA 277

Query: 218 KIPLD--IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275
              LD    + VQ +A  A Q +GC G++R D    P    V+  E N  PG T  S FP
Sbjct: 278 HANLDDVTRRRVQEVAVKAFQVLGCEGLARIDTFVTP-DGAVYVNEPNTMPGFTRSSGFP 336

Query: 276 EMAAYAGYSFRELLLWMVE 294
            M   +G ++ +++  ++E
Sbjct: 337 LMWQASGMTYAQIVSELIE 355


>gi|317130028|ref|YP_004096310.1| D-alanine/D-alanine ligase [Bacillus cellulosilyticus DSM 2522]
 gi|315474976|gb|ADU31579.1| D-alanine/D-alanine ligase [Bacillus cellulosilyticus DSM 2522]
          Length = 404

 Score =  120 bits (301), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 78/244 (31%), Positives = 124/244 (50%), Gaps = 33/244 (13%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+AF ++HG F EDG++Q  LELL +PY    +++S+  MDK+  K V    G+P+   +
Sbjct: 109 DVAFPIVHGTFAEDGVLQGYLELLGLPYVGCDVVSSSTGMDKVIMKNVYRDSGLPILDYV 168

Query: 112 LV--NRFTMDSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS---S 159
                ++  D   L+         P ++KP   GSS+GI      ++  +D L+ +   +
Sbjct: 169 WFYSTKWNEDQDELVKKVEGKLQYPVIVKPANLGSSVGI-----SKAANVDELEEAVELA 223

Query: 160 WNHGDQLLIEQYVDGI-ELTCGVMGD---ASLDVTEIAVPKSDFYSYELKYSSL------ 209
               ++++IE+ V  + E+ C V+GD   A   V E  +   +  SYE KY+        
Sbjct: 224 SQFANKIVIEKMVQNMTEINCSVLGDYEAAEASVCEQVLGNDEILSYEDKYAGGGSKGGG 283

Query: 210 ------NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
                 ++  ++PA I  +  KE+Q LA  A Q +GC G+SR DFL D  +  VF  EIN
Sbjct: 284 ASKGMESTNRIIPADISEEKTKEIQELAVAAFQVLGCSGVSRIDFLIDNDTNNVFINEIN 343

Query: 264 VQPG 267
             PG
Sbjct: 344 TIPG 347


>gi|15925073|ref|NP_372607.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|15927658|ref|NP_375191.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus
           N315]
 gi|57650756|ref|YP_186890.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus
           COL]
 gi|82751685|ref|YP_417426.1| D-alanyl-alanine synthetase A [Staphylococcus aureus RF122]
 gi|87159975|ref|YP_494685.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|88195984|ref|YP_500797.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|148268535|ref|YP_001247478.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus
           JH9]
 gi|150394599|ref|YP_001317274.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus
           JH1]
 gi|151222199|ref|YP_001333021.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|156980399|ref|YP_001442658.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|161510295|ref|YP_001575954.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|221141604|ref|ZP_03566097.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus
           str. JKD6009]
 gi|255006872|ref|ZP_05145473.2| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus
           Mu50-omega]
 gi|257793842|ref|ZP_05642821.1| D-alanyl-alanine synthetase A [Staphylococcus aureus A9781]
 gi|258407010|ref|ZP_05680160.1| D-alanyl-alanine synthetase A [Staphylococcus aureus A9763]
 gi|258422031|ref|ZP_05684948.1| D-alanyl-alanine synthetase A [Staphylococcus aureus A9719]
 gi|258440494|ref|ZP_05690664.1| D-alanyl-alanine synthetase A [Staphylococcus aureus A8115]
 gi|258445702|ref|ZP_05693880.1| D-alanyl-alanine synthetase A [Staphylococcus aureus A6300]
 gi|258450156|ref|ZP_05698251.1| D-alanyl-alanine synthetase A [Staphylococcus aureus A6224]
 gi|258453206|ref|ZP_05701197.1| D-alanyl-alanine synthetase A [Staphylococcus aureus A5948]
 gi|258453389|ref|ZP_05701371.1| D-alanyl-alanine synthetase A [Staphylococcus aureus A5937]
 gi|262052496|ref|ZP_06024694.1| D-alanylalanine synthetase [Staphylococcus aureus 930918-3]
 gi|269203719|ref|YP_003282988.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus
           ED98]
 gi|282895277|ref|ZP_06303490.1| D-alanine-D-alanine ligase [Staphylococcus aureus A8117]
 gi|282923072|ref|ZP_06330757.1| D-alanine-D-alanine ligase [Staphylococcus aureus A9765]
 gi|282929555|ref|ZP_06336952.1| D-alanine-D-alanine ligase [Staphylococcus aureus A10102]
 gi|284025118|ref|ZP_06379516.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus
           132]
 gi|294850568|ref|ZP_06791295.1| D-alanine-D-alanine ligase [Staphylococcus aureus A9754]
 gi|295407014|ref|ZP_06816816.1| D-alanine-D-alanine ligase [Staphylococcus aureus A8819]
 gi|296275713|ref|ZP_06858220.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus
           MR1]
 gi|297246743|ref|ZP_06930560.1| D-alanine-D-alanine ligase [Staphylococcus aureus A8796]
 gi|54036952|sp|P63892|DDL_STAAN RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|54040737|sp|P63891|DDL_STAAM RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|71153332|sp|Q5HEB7|DDL_STAAC RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|122538976|sp|Q2FWH3|DDL_STAA8 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|123484968|sp|Q2FF43|DDL_STAA3 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|123548215|sp|Q2YUH1|DDL_STAAB RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|166198505|sp|A7X4R6|DDL_STAA1 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|172048980|sp|A6QIS7|DDL_STAAE RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|189083058|sp|A6U3G9|DDL_STAA2 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|189083059|sp|A5IUM9|DDL_STAA9 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|189083060|sp|A8Z4Y6|DDL_STAAT RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|13701878|dbj|BAB43170.1| D-alanine-D-alanine ligase [Staphylococcus aureus subsp. aureus
           N315]
 gi|14247856|dbj|BAB58245.1| D-alanine-D-alanine ligase [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|57284942|gb|AAW37036.1| D-alanine--D-alanine ligase [Staphylococcus aureus subsp. aureus
           COL]
 gi|82657216|emb|CAI81656.1| D-alanine-D-alanine ligase [Staphylococcus aureus RF122]
 gi|87125949|gb|ABD20463.1| D-alanine--D-alanine ligase [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|87203542|gb|ABD31352.1| D-alanine--D-alanine ligase [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|147741604|gb|ABQ49902.1| D-alanine--D-alanine ligase [Staphylococcus aureus subsp. aureus
           JH9]
 gi|149947051|gb|ABR52987.1| D-alanine--D-alanine ligase [Staphylococcus aureus subsp. aureus
           JH1]
 gi|150374999|dbj|BAF68259.1| D-alanine-D-alanine ligase [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|156722534|dbj|BAF78951.1| D-alanine-D-alanine ligase [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|160369104|gb|ABX30075.1| D-alanine--D-alanine ligase [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|257787814|gb|EEV26154.1| D-alanyl-alanine synthetase A [Staphylococcus aureus A9781]
 gi|257841343|gb|EEV65787.1| D-alanyl-alanine synthetase A [Staphylococcus aureus A9763]
 gi|257841931|gb|EEV66363.1| D-alanyl-alanine synthetase A [Staphylococcus aureus A9719]
 gi|257852563|gb|EEV76481.1| D-alanyl-alanine synthetase A [Staphylococcus aureus A8115]
 gi|257855541|gb|EEV78478.1| D-alanyl-alanine synthetase A [Staphylococcus aureus A6300]
 gi|257856630|gb|EEV79536.1| D-alanyl-alanine synthetase A [Staphylococcus aureus A6224]
 gi|257859152|gb|EEV82009.1| D-alanyl-alanine synthetase A [Staphylococcus aureus A5948]
 gi|257864370|gb|EEV87116.1| D-alanyl-alanine synthetase A [Staphylococcus aureus A5937]
 gi|259159617|gb|EEW44663.1| D-alanylalanine synthetase [Staphylococcus aureus 930918-3]
 gi|262076009|gb|ACY11982.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus
           ED98]
 gi|269941683|emb|CBI50090.1| D-alanine--D-alanine ligase [Staphylococcus aureus subsp. aureus
           TW20]
 gi|282589034|gb|EFB94138.1| D-alanine-D-alanine ligase [Staphylococcus aureus A10102]
 gi|282593263|gb|EFB98260.1| D-alanine-D-alanine ligase [Staphylococcus aureus A9765]
 gi|282762350|gb|EFC02497.1| D-alanine-D-alanine ligase [Staphylococcus aureus A8117]
 gi|285817748|gb|ADC38235.1| D-alanine--D-alanine ligase [Staphylococcus aureus 04-02981]
 gi|294822588|gb|EFG39030.1| D-alanine-D-alanine ligase [Staphylococcus aureus A9754]
 gi|294968039|gb|EFG44066.1| D-alanine-D-alanine ligase [Staphylococcus aureus A8819]
 gi|297176403|gb|EFH35675.1| D-alanine-D-alanine ligase [Staphylococcus aureus A8796]
 gi|298695357|gb|ADI98579.1| D-alanine-D-alanine ligase [Staphylococcus aureus subsp. aureus
           ED133]
 gi|302333729|gb|ADL23922.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus
           JKD6159]
 gi|312830435|emb|CBX35277.1| D-alanine--D-alanine ligase (D-alanylalanine
           synthetase)(D-Ala-D-Ala ligase) [Staphylococcus aureus
           subsp. aureus ECT-R 2]
 gi|315128754|gb|EFT84754.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus
           CGS03]
 gi|315196985|gb|EFU27327.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus
           CGS01]
 gi|323439201|gb|EGA96928.1| D-alanyl-alanine synthetase A [Staphylococcus aureus O11]
 gi|323442421|gb|EGB00050.1| D-alanyl-alanine synthetase A [Staphylococcus aureus O46]
 gi|329314768|gb|AEB89181.1| D-alanine--D-alanine ligase [Staphylococcus aureus subsp. aureus
           T0131]
 gi|329724009|gb|EGG60533.1| D-ala D-ala ligase N-terminal domain protein [Staphylococcus aureus
           subsp. aureus 21189]
 gi|329726355|gb|EGG62823.1| D-ala D-ala ligase N-terminal domain protein [Staphylococcus aureus
           subsp. aureus 21172]
 gi|329729270|gb|EGG65678.1| D-ala D-ala ligase N-terminal domain protein [Staphylococcus aureus
           subsp. aureus 21193]
          Length = 356

 Score =  120 bits (301), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 93/338 (27%), Positives = 160/338 (47%), Gaps = 48/338 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI----DVD-RSVGLVLAHLKP---- 51
           + ++ GG S+E EVS+ + +   +A++   + V  I    D D R    + A +K     
Sbjct: 6   ICIVFGGKSAEHEVSILTAQNVLNAIDKDKYHVDIIYITNDGDWRKQNNITAEIKSTDEL 65

Query: 52  -----------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
                                  D  F +LHG  GEDG +Q + E+L++PY  +G+L++A
Sbjct: 66  HLENGEALEISQLLKESSSGQPYDAVFPLLHGPNGEDGTIQGLFEVLDVPYVGNGVLSAA 125

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-QHLI--------SPPYVIKPLKGGSSL 139
            SMDK+  KQ+    G+P  P I   R   +  +H I        + P  +KP   GSS+
Sbjct: 126 SSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYEHNILKLVNDKLNYPVFVKPANLGSSV 185

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPK 196
           GI     +  +   + ++  ++   +L+IEQ V+  E+   V+G+   + T   E+ V  
Sbjct: 186 GISKCNNEAELKEGIKEAFQFDR--KLVIEQGVNAREIEVAVLGNDYPEATWPGEV-VKD 242

Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256
             FY Y+ KY        +PA +  D+   ++ +A  A +A  C G+ R+DF F     +
Sbjct: 243 VAFYDYKSKYKDGKVQLQIPADLDEDVQLTLRNMALEAFKATDCSGLVRADF-FVTEDNQ 301

Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           ++  E N  PG T  S++P++    G S+ EL+  ++E
Sbjct: 302 IYINETNAMPGFTAFSMYPKLWENMGLSYPELITKLIE 339


>gi|116668048|pdb|2I87|A Chain A, Allosteric Inhibition Of Staphylococcus Aureus
           D-Alanine:d- Alanine Ligase Revealed By Crystallographic
           Studies
 gi|116668049|pdb|2I87|B Chain B, Allosteric Inhibition Of Staphylococcus Aureus
           D-Alanine:d- Alanine Ligase Revealed By Crystallographic
           Studies
 gi|116668051|pdb|2I8C|A Chain A, Allosteric Inhibition Of Staphylococcus Aureus
           D-Alanine:d- Alanine Ligase Revealed By Crystallographic
           Studies
 gi|116668052|pdb|2I8C|B Chain B, Allosteric Inhibition Of Staphylococcus Aureus
           D-Alanine:d- Alanine Ligase Revealed By Crystallographic
           Studies
          Length = 364

 Score =  120 bits (301), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 93/338 (27%), Positives = 160/338 (47%), Gaps = 48/338 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI----DVD-RSVGLVLAHLKP---- 51
           + ++ GG S+E EVS+ + +   +A++   + V  I    D D R    + A +K     
Sbjct: 6   ICIVFGGKSAEHEVSILTAQNVLNAIDKDKYHVDIIYITNDGDWRKQNNITAEIKSTDEL 65

Query: 52  -----------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
                                  D  F +LHG  GEDG +Q + E+L++PY  +G+L++A
Sbjct: 66  HLENGEALEISQLLKESSSGQPYDAVFPLLHGPNGEDGTIQGLFEVLDVPYVGNGVLSAA 125

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-QHLI--------SPPYVIKPLKGGSSL 139
            SMDK+  KQ+    G+P  P I   R   +  +H I        + P  +KP   GSS+
Sbjct: 126 SSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYEHNILKLVNDKLNYPVFVKPANLGSSV 185

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPK 196
           GI     +  +   + ++  ++   +L+IEQ V+  E+   V+G+   + T   E+ V  
Sbjct: 186 GISKCNNEAELKEGIKEAFQFDR--KLVIEQGVNAREIEVAVLGNDYPEATWPGEV-VKD 242

Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256
             FY Y+ KY        +PA +  D+   ++ +A  A +A  C G+ R+DF F     +
Sbjct: 243 VAFYDYKSKYKDGKVQLQIPADLDEDVQLTLRNMALEAFKATDCSGLVRADF-FVTEDNQ 301

Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           ++  E N  PG T  S++P++    G S+ EL+  ++E
Sbjct: 302 IYINETNAMPGFTAFSMYPKLWENMGLSYPELITKLIE 339


>gi|289746785|ref|ZP_06506163.1| D-alanyl-alanine synthetase A [Mycobacterium tuberculosis 02_1987]
 gi|289687313|gb|EFD54801.1| D-alanyl-alanine synthetase A [Mycobacterium tuberculosis 02_1987]
          Length = 363

 Score =  120 bits (301), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 72/213 (33%), Positives = 120/213 (56%), Gaps = 16/213 (7%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+ F VLHG +GEDG +Q +LEL  +PY  +G+LASA+ MDK  +K+++++ G+PV    
Sbjct: 114 DVVFPVLHGPYGEDGTIQGLLELAGVPYVGAGVLASAVGMDKEFTKKLLAADGLPVGAYA 173

Query: 112 LVN--RFTMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL 167
           ++   R T+  Q    +  P  +KP +GGSS+G+  +     +P  + ++    H  +++
Sbjct: 174 VLRPPRSTLHRQECERLGLPVFVKPARGGSSIGVSRVSSWDQLPAAVARAR--RHDPKVI 231

Query: 168 IEQYVDGIELTCGV--MGDASLDVT---EIAVP-----KSDFYSYELKYSSLNSTHVLPA 217
           +E  + G EL CGV  M D +L+ +   EI V      +  FY +  KY    +   +PA
Sbjct: 232 VEAAISGRELECGVLEMPDGTLEASTLGEIRVAGVRGREDSFYDFATKYLDDAAELDVPA 291

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
           K+   + + +++LA  A  AI CRG++R DF  
Sbjct: 292 KVDDQVAEAIRQLAIRAFAAIDCRGLARVDFFL 324


>gi|288925170|ref|ZP_06419105.1| D-alanine--D-alanine ligase [Prevotella buccae D17]
 gi|315607391|ref|ZP_07882390.1| D-alanine-D-alanine ligase [Prevotella buccae ATCC 33574]
 gi|288337935|gb|EFC76286.1| D-alanine--D-alanine ligase [Prevotella buccae D17]
 gi|315250948|gb|EFU30938.1| D-alanine-D-alanine ligase [Prevotella buccae ATCC 33574]
          Length = 331

 Score =  120 bits (301), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 91/326 (27%), Positives = 157/326 (48%), Gaps = 35/326 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---DRSVGLVLAHLKP------ 51
           +A++ GG SSE +VSL S +   S  +   + V  +DV   D  V L    + P      
Sbjct: 8   IAIVCGGDSSEHDVSLRSAQGLYSFFDKERYHVYIVDVKGTDWHVNLDNGDIVPIDKNDF 67

Query: 52  -----------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
                      D A+  +HG  GE+G++Q   +L+ +PY+ SG+L  AL+ +K      +
Sbjct: 68  SFVQAGTTVYFDYAYITIHGQPGENGVMQGYFDLIHLPYSTSGVLVEALTFNKYVLNNYL 127

Query: 101 SSCGVPVCPSILVNR-FTMDSQHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
            S GV V  S+L+ R  + D + +   +  P  +KP   GSS G+  +K+   +   L  
Sbjct: 128 RSFGVNVADSLLLRRGESYDEKEIERRLGMPCFVKPAADGSSFGVSKVKEADRLAPAL-- 185

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDAS----LDVTEIAVPKSDFYSYELKYSSLNST 212
             ++   D++++E ++DG+E++ G+         L  TE+ V  ++F+ Y+ KY+     
Sbjct: 186 RVAFMESDEVMVEGFLDGMEISQGIYKTKEKTVVLPATEV-VTSNEFFDYDAKYNG-QVK 243

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK---VFWLEINVQPGMT 269
            + PA++  +   +V       ++ +   GI R D++    S     V  LEIN  PGMT
Sbjct: 244 EITPARLSPETAAKVSAETARIYELLHANGIIRIDYIISKDSEGCDVVNMLEINTTPGMT 303

Query: 270 PVSIFPEMAAYAGYSFRELLLWMVED 295
             S  P+    AG   +E+L  +VE+
Sbjct: 304 ATSFIPQQVRAAGLDIKEVLTEIVEN 329


>gi|284042877|ref|YP_003393217.1| D-alanine/D-alanine ligase [Conexibacter woesei DSM 14684]
 gi|283947098|gb|ADB49842.1| D-alanine/D-alanine ligase [Conexibacter woesei DSM 14684]
          Length = 346

 Score =  120 bits (301), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 84/251 (33%), Positives = 128/251 (50%), Gaps = 22/251 (8%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+   VLHG  GEDG +Q +LEL  IPY    + +SAL MDK  +  V  + G      I
Sbjct: 92  DVVLPVLHGKLGEDGAMQGLLELSGIPYAGCDVQSSALCMDKSLTYTVARAAG------I 145

Query: 112 LVNRF-TMDSQHLISP-----PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
              RF T+ +   + P     P  +KP + GSS G+  +     +P  L  +  ++   +
Sbjct: 146 ATPRFWTVTANEHVDPDQLPYPVFVKPARSGSSFGVSKVSGRDELPGALDVARRYD--SK 203

Query: 166 LLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSY---ELKYSSLNSTHVLPAK 218
           +L+E+ V G E+ C ++G+     + +V +IA+    F  +   E +  S NS+  +PA 
Sbjct: 204 VLVEEAVVGSEIGCAILGNGLDLLAGEVDQIALSHGFFRIHQEDEPERGSDNSSVTVPAA 263

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278
           I  +    VQ  A  A++A+GCRG+SR D +F      V   E+N  PGMT  S +P M 
Sbjct: 264 ISQEARALVQETAKAAYRALGCRGLSRVD-MFLTADGDVVLNEVNTLPGMTSYSRYPRMM 322

Query: 279 AYAGYSFRELL 289
           A AG  F E++
Sbjct: 323 AAAGLPFAEVI 333


>gi|154267923|gb|ABS72058.1| D-alanine:D-lactate ligase [Ruminococcus gauvreauii]
          Length = 343

 Score =  120 bits (301), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 93/338 (27%), Positives = 165/338 (48%), Gaps = 49/338 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------------------- 38
           +AVL GG S E  VS+ S    A+ ++   ++   I +                      
Sbjct: 6   VAVLFGGCSEEHNVSIKSAMEIAANIDTKKYQPYYIGITKSGVWKMCEKPCLEWEQYAGD 65

Query: 39  ------DRSV-GLVLA-----HLKP-DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
                 DRS  GL++       ++P D+   ++HG FGEDG +Q +LEL  IPY    I 
Sbjct: 66  PVVFSPDRSTHGLLIQKDKGYEIQPVDVVLPMIHGKFGEDGSIQGLLELSGIPYVGCDIQ 125

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIV 143
           +S   MDK  +  VV + G+ V P   IL     ++++  + P +V KP + GSS G+  
Sbjct: 126 SSVTCMDKALAYTVVKNAGIAV-PGFRILQEGDRLETEDFVYPVFV-KPARSGSSFGVNK 183

Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDF 199
           + K + +   + ++  ++   ++LIE+ V G E+ C ++G+     + +V +I +    F
Sbjct: 184 VCKAEELQAAIEEARKYD--SKILIEEAVTGSEVGCAILGNGNDLMAGEVDQIELRHGFF 241

Query: 200 YSYEL---KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256
             ++    +  S N+   +PA +P ++ + +Q+ A   ++ +GCRG++R D LF      
Sbjct: 242 KIHQEAQPEKGSENAVIRVPAALPDEVRERIQKTAMKIYRILGCRGLARID-LFLREDGC 300

Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           +   E+N  PG T  S +P M   AG++  E+L  ++E
Sbjct: 301 IVLNEVNTMPGFTSYSRYPRMMTAAGFTLTEILDRLIE 338


>gi|298241042|ref|ZP_06964849.1| D-alanine/D-alanine ligase [Ktedonobacter racemifer DSM 44963]
 gi|297554096|gb|EFH87960.1| D-alanine/D-alanine ligase [Ktedonobacter racemifer DSM 44963]
          Length = 382

 Score =  120 bits (301), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 71/254 (27%), Positives = 131/254 (51%), Gaps = 13/254 (5%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+ F V+HG +GEDG +Q +LE+  +PY   G+L SAL MDK + K +  +  +PV P +
Sbjct: 115 DVIFPVMHGTYGEDGALQGLLEMANVPYVGCGVLGSALGMDKEKMKMLFQAIHLPVLPFL 174

Query: 112 LVNR---------FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
             +R           +  +  +  P ++KP   GSS+G+      Q++   + Q+  ++ 
Sbjct: 175 AYHRKQWKQAPETILLAVEQELGYPCIVKPANMGSSIGVSKAADRQTLEQAIAQAGEYD- 233

Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVTEIA--VPKSDFYSYELKYSSLNSTHVLPAKIP 220
             +++IE+++D  EL+C V+G+     + I   V +     Y+ KY        +PA IP
Sbjct: 234 -TKIIIERWLDVRELSCAVLGNEEPKTSLIGELVTEMTLLDYDAKYLHPGFHFDVPATIP 292

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280
             + KEV  ++  A   +   G++R DF  D    +++  E+N  P  T  S++P++ + 
Sbjct: 293 GPLAKEVFHMSTQAFLVLDLSGLARVDFFLDRNDGRIYINEVNTMPDFTQDSVYPKLWSA 352

Query: 281 AGYSFRELLLWMVE 294
           +   + +LL  ++E
Sbjct: 353 SNLPYPKLLDRLIE 366


>gi|302751964|gb|ADL66141.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus
           str. JKD6008]
          Length = 361

 Score =  120 bits (300), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 93/338 (27%), Positives = 160/338 (47%), Gaps = 48/338 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI----DVD-RSVGLVLAHLKP---- 51
           + ++ GG S+E EVS+ + +   +A++   + V  I    D D R    + A +K     
Sbjct: 11  ICIVFGGKSAEHEVSILTAQNVLNAIDKDKYHVDIIYITNDGDWRKQNNITAEIKSTDEL 70

Query: 52  -----------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
                                  D  F +LHG  GEDG +Q + E+L++PY  +G+L++A
Sbjct: 71  HLENGEALEISQLLKESSSGQPYDAVFPLLHGPNGEDGTIQGLFEVLDVPYVGNGVLSAA 130

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-QHLI--------SPPYVIKPLKGGSSL 139
            SMDK+  KQ+    G+P  P I   R   +  +H I        + P  +KP   GSS+
Sbjct: 131 SSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYEHNILKLVNDKLNYPVFVKPANLGSSV 190

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPK 196
           GI     +  +   + ++  ++   +L+IEQ V+  E+   V+G+   + T   E+ V  
Sbjct: 191 GISKCNNEAELKEGIKEAFQFDR--KLVIEQGVNAREIEVAVLGNDYPEATWPGEV-VKD 247

Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256
             FY Y+ KY        +PA +  D+   ++ +A  A +A  C G+ R+DF F     +
Sbjct: 248 VAFYDYKSKYKDGKVQLQIPADLDEDVQLTLRNMALEAFKATDCSGLVRADF-FVTEDNQ 306

Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           ++  E N  PG T  S++P++    G S+ EL+  ++E
Sbjct: 307 IYINETNAMPGFTAFSMYPKLWENMGLSYPELITKLIE 344


>gi|258433599|ref|ZP_05688672.1| D-alanyl-alanine synthetase A [Staphylococcus aureus A9299]
 gi|257849330|gb|EEV73309.1| D-alanyl-alanine synthetase A [Staphylococcus aureus A9299]
          Length = 356

 Score =  120 bits (300), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 93/338 (27%), Positives = 160/338 (47%), Gaps = 48/338 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI----DVD-RSVGLVLAHLKP---- 51
           + ++ GG S+E EVS+ + +   +A++   + V  I    D D R    + A +K     
Sbjct: 6   ICIVFGGKSAEHEVSILTAQNVLNAIDKDKYHVDIIYITNDGDWRKQNNITAEIKSTDEL 65

Query: 52  -----------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
                                  D  F +LHG  GEDG +Q + E+L++PY  +G+L++A
Sbjct: 66  HLENGEALEISQLLKESSSGQPYDAVFPLLHGPNGEDGTIQGLFEVLDVPYVGNGVLSAA 125

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-QHLI--------SPPYVIKPLKGGSSL 139
            SMDK+  KQ+    G+P  P I   R   +  +H I        + P  +KP   GSS+
Sbjct: 126 SSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYEHNILKLVNDKLNYPVFVKPANLGSSV 185

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPK 196
           GI     +  +   + ++  ++   +L+IEQ V+  E+   V+G+   + T   E+ V  
Sbjct: 186 GISKCNNEAELKEGVKEAFQFDR--KLVIEQGVNAREIEVAVLGNDYPEATWPGEV-VKD 242

Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256
             FY Y+ KY        +PA +  D+   ++ +A  A +A  C G+ R+DF F     +
Sbjct: 243 VAFYDYKSKYKDGKVQLQIPADLDEDVQLTLRNMALEAFKATDCSGLVRADF-FVTEDNQ 301

Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           ++  E N  PG T  S++P++    G S+ EL+  ++E
Sbjct: 302 IYINETNAMPGFTAFSMYPKLWENMGLSYPELITKLIE 339


>gi|253731080|ref|ZP_04865245.1| D-alanine--D-alanine ligase [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253733083|ref|ZP_04867248.1| D-alanine--D-alanine ligase [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|304379264|ref|ZP_07362003.1| D-alanine-D-alanine ligase [Staphylococcus aureus subsp. aureus
           ATCC BAA-39]
 gi|253725207|gb|EES93936.1| D-alanine--D-alanine ligase [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253728991|gb|EES97720.1| D-alanine--D-alanine ligase [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|304342123|gb|EFM08023.1| D-alanine-D-alanine ligase [Staphylococcus aureus subsp. aureus
           ATCC BAA-39]
 gi|320140746|gb|EFW32598.1| D-ala D-ala ligase [Staphylococcus aureus subsp. aureus MRSA131]
 gi|320143721|gb|EFW35498.1| D-ala D-ala ligase [Staphylococcus aureus subsp. aureus MRSA177]
          Length = 393

 Score =  120 bits (300), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 93/338 (27%), Positives = 160/338 (47%), Gaps = 48/338 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI----DVD-RSVGLVLAHLKP---- 51
           + ++ GG S+E EVS+ + +   +A++   + V  I    D D R    + A +K     
Sbjct: 43  ICIVFGGKSAEHEVSILTAQNVLNAIDKDKYHVDIIYITNDGDWRKQNNITAEIKSTDEL 102

Query: 52  -----------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
                                  D  F +LHG  GEDG +Q + E+L++PY  +G+L++A
Sbjct: 103 HLENGEALEISQLLKESSSGQPYDAVFPLLHGPNGEDGTIQGLFEVLDVPYVGNGVLSAA 162

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-QHLI--------SPPYVIKPLKGGSSL 139
            SMDK+  KQ+    G+P  P I   R   +  +H I        + P  +KP   GSS+
Sbjct: 163 SSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYEHNILKLVNDKLNYPVFVKPANLGSSV 222

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPK 196
           GI     +  +   + ++  ++   +L+IEQ V+  E+   V+G+   + T   E+ V  
Sbjct: 223 GISKCNNEAELKEGIKEAFQFDR--KLVIEQGVNAREIEVAVLGNDYPEATWPGEV-VKD 279

Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256
             FY Y+ KY        +PA +  D+   ++ +A  A +A  C G+ R+DF F     +
Sbjct: 280 VAFYDYKSKYKDGKVQLQIPADLDEDVQLTLRNMALEAFKATDCSGLVRADF-FVTEDNQ 338

Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           ++  E N  PG T  S++P++    G S+ EL+  ++E
Sbjct: 339 IYINETNAMPGFTAFSMYPKLWENMGLSYPELITKLIE 376


>gi|255684796|gb|ACU27887.1| D-alanine:D-lactate ligase [Staphylococcus aureus]
          Length = 314

 Score =  120 bits (300), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 85/275 (30%), Positives = 137/275 (49%), Gaps = 12/275 (4%)

Query: 22  CASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81
           C SA+     K+  + V ++    + H+  D+AF+ LHG  GEDG +Q + EL  IP+  
Sbjct: 41  CYSAVLSPDKKMHGLLVKKNHEYEINHV--DVAFSALHGKSGEDGSIQGLFELSGIPFVG 98

Query: 82  SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGI 141
             I +SA+ MDK  +  V  + G+      ++N+         + P  +KP + GSS G 
Sbjct: 99  CDIQSSAICMDKSLTYIVAKNAGIATPAFWVINKDDRPVAATFTYPVFVKPARSGSSFG- 157

Query: 142 IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD-ASLDVTEIAVPKSDFY 200
            V K + +  LD    S+  +  ++LIEQ V G E+ C V+G+ A+L V E+   +  + 
Sbjct: 158 -VKKVNSADELDYAIESARQYDSKILIEQAVSGCEVGCAVLGNSAALVVGEVDQIRLQYG 216

Query: 201 SY------ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
            +      E +  S N+   +PA +  +    +Q  A   ++A+GCRG++R D       
Sbjct: 217 IFRIHQEVEPEKGSENAVITVPADLSAEERGRIQETAKKIYKALGCRGLARVDMFLQDNG 276

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           R V   E+N  PG T  S +P M A AG +  EL+
Sbjct: 277 RIVL-NEVNTLPGFTSYSRYPRMMAAAGIALPELI 310


>gi|309385870|gb|ADO66795.1| vancomycin/teicoplanin A-type resistance protein VanA [Enterococcus
           faecium]
          Length = 359

 Score =  120 bits (300), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 85/275 (30%), Positives = 137/275 (49%), Gaps = 12/275 (4%)

Query: 22  CASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81
           C SA+     K+  + V ++    + H+  D+AF+ LHG  GEDG +Q + EL  IP+  
Sbjct: 80  CYSAVLSPDKKMHGLLVKKNHEYEINHV--DVAFSALHGKSGEDGSIQGLFELSGIPFVG 137

Query: 82  SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGI 141
             I +SA+ MDK  +  V  + G+      ++N+         + P  +KP + GSS G 
Sbjct: 138 CDIQSSAICMDKSLTYIVAKNAGIATPAFWVINKDDRPVAATFTYPVFVKPARSGSSFG- 196

Query: 142 IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD-ASLDVTEIAVPKSDFY 200
            V K + +  LD    S+  +  ++LIEQ V G E+ C V+G+ A+L V E+   +  + 
Sbjct: 197 -VKKVNSADELDYAIESARQYDSKILIEQAVSGCEVGCAVLGNSAALVVGEVDQIRLQYG 255

Query: 201 SY------ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
            +      E +  S N+   +PA +  +    +Q  A   ++A+GCRG++R D       
Sbjct: 256 IFRIHQEVEPEKGSENAVITVPADLSAEERGRIQETAKKIYKALGCRGLARVDMFLQDNG 315

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           R V   E+N  PG T  S +P M A AG +  EL+
Sbjct: 316 RIVL-NEVNTLPGFTSYSRYPRMMAAAGIALPELI 349


>gi|302345910|ref|YP_003814263.1| D-ala D-ala ligase N-terminal domain protein [Prevotella
           melaninogenica ATCC 25845]
 gi|302149066|gb|ADK95328.1| D-ala D-ala ligase N-terminal domain protein [Prevotella
           melaninogenica ATCC 25845]
          Length = 332

 Score =  120 bits (300), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 96/330 (29%), Positives = 156/330 (47%), Gaps = 43/330 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---DRSVGLVLAHLKP------ 51
           +A++ GG SSE +VS+ SG+   S  +   + +  +DV   D +V L    L P      
Sbjct: 8   IAIVCGGDSSEHDVSMRSGQGLYSFFDKERYNIYIVDVKGIDWNVELPDGSLAPIDKNDF 67

Query: 52  -----------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
                      D A+  +HG  GE+G++Q   +L++IPY+  G+L  AL+ DK      +
Sbjct: 68  SFVMNGERVEFDYAYITIHGQPGENGVMQGYFDLIQIPYSTGGVLVEALTFDKYVLNNYL 127

Query: 101 SSCGVPVCPSILVNRF----TMDSQHLISPPYVIKPLKGGSSLGIIVIKK-DQSIP---L 152
              G+ V  SIL+ R       + +  +  P  +KP   GSS G+  +K  DQ  P   +
Sbjct: 128 RGFGIKVADSILLRRGEEYDEAEIEKRLGMPCFVKPAADGSSFGVSKVKNIDQLAPALRV 187

Query: 153 DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV----TEIAVPKSDFYSYELKYSS 208
             +QS      D+++IE ++DG+E++ GV       V    TE+ V  ++F+ Y  KY+ 
Sbjct: 188 AFMQS------DEVMIEAFMDGMEISQGVYKTKDKAVVFPATEV-VTSNEFFDYNAKYNG 240

Query: 209 LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF--DPLSRKVF-WLEINVQ 265
                + PA++  +  K V       +  +   GI R D++   D   + V   LEIN  
Sbjct: 241 -QVEEITPARMSDETAKRVAAETSCIYDILHANGIIRIDYIISKDKDGKDVINMLEINTT 299

Query: 266 PGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           PGMT  S  P+    AG   + +L  +VE+
Sbjct: 300 PGMTVTSFIPQQVRAAGLDIKNVLSDIVEN 329


>gi|50082943|gb|AAT70093.1| D-alanyl-D-alanine ligase [Paenibacillus apiarius]
 gi|66731650|gb|AAY52016.1| VanA [Paenibacillus apiarius]
          Length = 343

 Score =  120 bits (300), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 95/331 (28%), Positives = 152/331 (45%), Gaps = 45/331 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSV------------------ 42
           +A+L GG S E +VS+ S K  A+ +    ++   I + RS                   
Sbjct: 6   IAILFGGCSEEHDVSVKSAKEIANNINTEKYEPIYIGITRSGVWKMCEKPCMDWDNENCR 65

Query: 43  -----------GLVLAHLKP------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
                      GL++   K       D AF+VLHG  GEDG +Q + EL  IPY    I 
Sbjct: 66  SAVLSPDKRMHGLLVMRDKGYQIQRIDAAFSVLHGKSGEDGAIQGLFELSGIPYVGCDIQ 125

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145
           +SA+ MDK  +  +  + G+      ++N+    +    + P  +KP + GSS G  V K
Sbjct: 126 SSAVCMDKSLAYIIAKNDGIATPEFWVINKDDRPAAAAFTYPVFVKPARSGSSYG--VKK 183

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL----DVTEIAVPKSDFYS 201
            + +  LD    S+  +  ++LIEQ V G E+ C V+G++S     +V +I +    F  
Sbjct: 184 VNGADELDAAIESARQYDSKILIEQAVLGCEVGCAVLGNSSELIVGEVDQIRLQHGIFRI 243

Query: 202 Y---ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
           +   E +  S N+   +PA +  +    ++  A   ++A+GCRG++R D       R V 
Sbjct: 244 HQEAEPEKGSENAVITIPADLSAEERGRIRDTAKKIYKALGCRGLARVDMFLQDNGRIVL 303

Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
             E+N  PG T  S +P M   AG +  EL+
Sbjct: 304 -NEVNTLPGFTSYSRYPRMMVAAGITLPELI 333


>gi|227069722|gb|ACP19236.1| ligase VanA [Enterococcus faecium]
          Length = 343

 Score =  120 bits (300), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 96/333 (28%), Positives = 151/333 (45%), Gaps = 49/333 (14%)

Query: 1   MAVLMGGISSEREVSLSSG-----------------------------KACASALEDAGF 31
           +A+L GG S E +VSL S                              K CA    D  +
Sbjct: 6   VAILFGGCSEEHDVSLKSAIEIAANINKEKYEPLYIGITKSGVWKMCEKPCAEWENDNCY 65

Query: 32  --------KVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                   K+  + V ++    + H+  D+AF+ LHG  GEDG +Q + EL  IP+    
Sbjct: 66  SAVLSPDKKMHGLLVKKNHEYEINHV--DVAFSALHGKSGEDGSIQGLFELSGIPFVGCD 123

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIV 143
           I +SA+ MDK  +  V  + G+      ++N+         + P  +KP + GSS G  V
Sbjct: 124 IQSSAICMDKSLTYIVAKNAGIATPAFWVINKDDRPVAATFTYPVFVKPARSGSSFG--V 181

Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD-ASLDVTEIAVPKSDFYSY 202
            K + +  LD    S+  +  ++LIEQ V G E+ C V+G+ A+L V E+   +  +  +
Sbjct: 182 KKVNSADELDYAIESARQYDSKILIEQAVSGCEVGCAVLGNSAALVVGEVDQIRLQYGIF 241

Query: 203 ------ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256
                 E +  S N+   +PA +  +    +Q  A   ++A+GCRG++R D       R 
Sbjct: 242 RIHQEVEPEKGSENAVITVPADLSAEERGRIQETAKKIYKALGCRGLARVDMFLQDNGRI 301

Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           V   E+N  PG T  S +P M A AG +  EL+
Sbjct: 302 VL-NEVNTLPGFTSYSRYPRMMAAAGIALPELI 333


>gi|281425097|ref|ZP_06256010.1| D-alanine--D-alanine ligase [Prevotella oris F0302]
 gi|299142140|ref|ZP_07035273.1| D-alanine--D-alanine ligase [Prevotella oris C735]
 gi|281400941|gb|EFB31772.1| D-alanine--D-alanine ligase [Prevotella oris F0302]
 gi|298576229|gb|EFI48102.1| D-alanine--D-alanine ligase [Prevotella oris C735]
          Length = 331

 Score =  120 bits (300), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 93/327 (28%), Positives = 155/327 (47%), Gaps = 37/327 (11%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-------DRSVGLVLAHLKPDL 53
           +A++ GG SSE +VSL S +   S  +   + V  +DV       + S G   A  K D 
Sbjct: 8   IAIVCGGDSSEHDVSLRSAQGLYSFFDKEKYNVYIVDVKGTDWHVNFSDGATAAIDKNDF 67

Query: 54  AFN-------------VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           +F               +HG  GE+G++Q   +L+ +PY+ SG+L  A++ DK      +
Sbjct: 68  SFKHNGKTVFFDYAYITIHGQPGENGVMQGYFDLIHLPYSTSGVLVEAMTFDKYVLNNYL 127

Query: 101 SSCGVPVCPSILVNRFTMDSQHLISP----PYVIKPLKGGSSLGIIVIKK-DQSIPLDLL 155
              GV V  SIL+ R     +  I      P  +KP   GSS G+  +K  DQ  P   +
Sbjct: 128 RGFGVRVADSILLRRGEDYDEEQIEKRLGMPCFVKPSADGSSFGVSKVKNADQLAPALRV 187

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV----TEIAVPKSDFYSYELKYSSLNS 211
              ++   ++++IE Y+DG+E++ G+      +V    TE+ V K++F+ Y+ KY+    
Sbjct: 188 ---AFMESNEVMIEGYLDGVEISQGIYKTHDKEVVLPATEV-VTKNEFFDYDAKYNG-QV 242

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK---VFWLEINVQPGM 268
             + PA++  +   +V       +  +   GI R D++    +     V  LEIN  PGM
Sbjct: 243 QEITPARLSKETAAKVAAETSRIYDILHANGIIRIDYIISKDAEGNDVVNMLEINTTPGM 302

Query: 269 TPVSIFPEMAAYAGYSFRELLLWMVED 295
           T  S  P+    AG   +++L  +VE+
Sbjct: 303 TATSFIPQQVRAAGLDIKDVLSDIVEN 329


>gi|33416270|ref|NP_878016.1| vancomycin/teicoplanin A-type resistance protein VanA
           [Staphylococcus aureus]
 gi|121633839|ref|YP_976077.1| VanA protein [Enterococcus faecium]
 gi|124112006|ref|YP_001019035.1| VanA protein [Enterococcus faecium]
 gi|190606511|ref|YP_001974796.1| VanA protein [Enterococcus faecium]
 gi|197103117|ref|YP_002128399.1| D-alanine--D-lactate ligase [Enterococcus faecium]
 gi|256965577|ref|ZP_05569748.1| vancomycin/teicoplanin A-type resistance protein VanA [Enterococcus
           faecalis HIP11704]
 gi|257891272|ref|ZP_05670925.1| vancomycin/teicoplanin A-type resistance protein vanA [Enterococcus
           faecium 1,231,410]
 gi|293567293|ref|ZP_06678646.1| D-alanine-D-lactate ligase VanA [Enterococcus faecium E1071]
 gi|294617750|ref|ZP_06697368.1| vancomycin/teicoplanin A-type resistance protein VanA [Enterococcus
           faecium E1679]
 gi|305678707|ref|YP_003864126.1| VanA [Enterococcus faecalis]
 gi|313247847|ref|YP_004033009.1| vanomycin resistance [Enterococcus faecalis]
 gi|137441|sp|P25051|VANA_ENTFC RecName: Full=Vancomycin/teicoplanin A-type resistance protein
           VanA; AltName: Full=D-alanine--D-lactate ligase;
           AltName: Full=VanA ligase
 gi|21886742|gb|AAM77885.1|AF516335_5 D-Ala-D-Lac ligase [Enterococcus faecium]
 gi|43336|emb|CAA40215.1| VANA ligase [Enterococcus faecium]
 gi|155042|gb|AAA65956.1| vanA [Enterococcus faecium]
 gi|33390954|gb|AAQ17160.1| vancomycin/teicoplanin A-type resistance protein VanA
           [Staphylococcus aureus]
 gi|110556110|dbj|BAE98129.1| vanA [Enterococcus faecalis]
 gi|121490898|emb|CAL36534.1| VanA protein [Enterococcus faecium]
 gi|124012108|emb|CAL90940.1| VanA protein [Enterococcus faecium]
 gi|186886505|gb|ACC93633.1| VanA [Enterococcus faecium]
 gi|190350281|emb|CAP62631.1| VanA protein [Enterococcus faecium]
 gi|196158939|emb|CAP70014.1| VanA protein [Enterococcus faecium]
 gi|256956073|gb|EEU72705.1| vancomycin/teicoplanin A-type resistance protein VanA [Enterococcus
           faecalis HIP11704]
 gi|257827632|gb|EEV54258.1| vancomycin/teicoplanin A-type resistance protein vanA [Enterococcus
           faecium 1,231,410]
 gi|283481160|emb|CAZ67071.1| VanA protein [Enterococcus faecium]
 gi|291590001|gb|EFF21796.1| D-alanine-D-lactate ligase VanA [Enterococcus faecium E1071]
 gi|291595996|gb|EFF27271.1| vancomycin/teicoplanin A-type resistance protein VanA [Enterococcus
           faecium E1679]
 gi|304324958|gb|ADM24838.1| VanA [Enterococcus faecalis]
 gi|304325000|gb|ADM24879.1| VanA [Enterococcus faecalis]
 gi|304325042|gb|ADM24920.1| VanA [Enterococcus faecalis]
 gi|312837014|dbj|BAJ34900.1| vanomycin resistance [Enterococcus faecalis]
          Length = 343

 Score =  120 bits (300), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 85/275 (30%), Positives = 137/275 (49%), Gaps = 12/275 (4%)

Query: 22  CASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81
           C SA+     K+  + V ++    + H+  D+AF+ LHG  GEDG +Q + EL  IP+  
Sbjct: 64  CYSAVLSPDKKMHGLLVKKNHEYEINHV--DVAFSALHGKSGEDGSIQGLFELSGIPFVG 121

Query: 82  SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGI 141
             I +SA+ MDK  +  V  + G+      ++N+         + P  +KP + GSS G 
Sbjct: 122 CDIQSSAICMDKSLTYIVAKNAGIATPAFWVINKDDRPVAATFTYPVFVKPARSGSSFG- 180

Query: 142 IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD-ASLDVTEIAVPKSDFY 200
            V K + +  LD    S+  +  ++LIEQ V G E+ C V+G+ A+L V E+   +  + 
Sbjct: 181 -VKKVNSADELDYAIESARQYDSKILIEQAVSGCEVGCAVLGNSAALVVGEVDQIRLQYG 239

Query: 201 SY------ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
            +      E +  S N+   +PA +  +    +Q  A   ++A+GCRG++R D       
Sbjct: 240 IFRIHQEVEPEKGSENAVITVPADLSAEERGRIQETAKKIYKALGCRGLARVDMFLQDNG 299

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           R V   E+N  PG T  S +P M A AG +  EL+
Sbjct: 300 RIVL-NEVNTLPGFTSYSRYPRMMAAAGIALPELI 333


>gi|257784124|ref|YP_003179341.1| D-alanine--D-alanine ligase [Atopobium parvulum DSM 20469]
 gi|257472631|gb|ACV50750.1| D-alanine--D-alanine ligase [Atopobium parvulum DSM 20469]
          Length = 333

 Score =  120 bits (300), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 99/329 (30%), Positives = 156/329 (47%), Gaps = 38/329 (11%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AV+MGG S ER  SL SG   + ALE  G++V  +D D  +   L   KPD+AF  LHG
Sbjct: 5   VAVIMGGASFERNFSLKSGALVSEALEKCGYEVLPLDADAHLVDTLRAEKPDVAFVCLHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDK------MRSKQVVSSCGVPVCPSILVN 114
             GEDG V A+LE L+IPY  S   +   + +K      +R         V   P I++ 
Sbjct: 65  AGGEDGAVPALLEFLKIPYVGSRPASCRAAWNKADMPFIVRQAWSKEESEVIWPPQIVLT 124

Query: 115 -----------RFTMDSQHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160
                         M  + L   +  P  +KP+ GGS++G+  +     +   LL +  +
Sbjct: 125 ASAFKDLGAAAALDMVPERLGGGVGFPLAVKPVHGGSAMGLSKVDSADQLGKALLGALGF 184

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216
           +  D ++I+Q+VDG+E++  V+ DA    +L   EI+V K   Y  + +       H  P
Sbjct: 185 D--DSVIIQQWVDGVEVSVTVLSDADGEKTLPPVEISVIKG-IYDTDARLDPERIEHFCP 241

Query: 217 AKI---------PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPG 267
            +          P+   + ++R A     A GCR ++R DF++D     V  + +   PG
Sbjct: 242 VRSESLAALGADPVAAREALERAALEVFTAYGCRDLARIDFIWD--GHHVMVMGLKTFPG 299

Query: 268 MTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +T  S+ P     AGY+  ++L  +VE A
Sbjct: 300 LTETSLVPMAIEAAGYAVEDVLAQLVEGA 328


>gi|328956666|ref|YP_004374052.1| D-alanine--D-alanine ligase [Carnobacterium sp. 17-4]
 gi|328672990|gb|AEB29036.1| D-alanine--D-alanine ligase [Carnobacterium sp. 17-4]
          Length = 363

 Score =  119 bits (299), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 87/258 (33%), Positives = 136/258 (52%), Gaps = 28/258 (10%)

Query: 55  FNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
           F VLHG  GEDG VQ + E++ +PY  +G+LASA  MDK+ SKQ+    G+P  P + V 
Sbjct: 100 FPVLHGPNGEDGTVQGLFEVIGMPYVGAGVLASACGMDKIISKQLFQQAGLPQVPYVPVR 159

Query: 115 R----------FTMDSQHLISPPYVIKPLKGGSSLGIIVIK-KDQSIPLDLLQSSSWNHG 163
           +          F      L  P Y IKP   GSS+GI   + +D+ I    L   +  + 
Sbjct: 160 KAEWLNDKESVFKHCEGTLFYPMY-IKPANLGSSVGISKAENRDELIEAIEL---ALRYD 215

Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKS-----DFYSYELKYSSLNSTHVL--P 216
            ++++EQ ++  E+   ++G+   D   I+VP       DFY YE KY  LN+  VL  P
Sbjct: 216 RRVVVEQGIEAREIEVAILGN---DDIHISVPGELVKTVDFYDYESKY--LNNEVVLQIP 270

Query: 217 AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPE 276
           A +P D+   ++  A  A QA+   G+SR DF F   + ++F  E+N  PG T  S++P 
Sbjct: 271 ALVPEDVNTRLREYAVRAFQALDGSGLSRCDF-FLTSNDELFINEVNTMPGFTQFSMYPS 329

Query: 277 MAAYAGYSFRELLLWMVE 294
           +    G ++ +L+  +++
Sbjct: 330 LWKNTGLNYGDLVEELIQ 347


>gi|15675338|ref|NP_269512.1| D-alanyl-alanine synthetase A [Streptococcus pyogenes M1 GAS]
 gi|56807611|ref|ZP_00365514.1| COG1181: D-alanine-D-alanine ligase and related ATP-grasp enzymes
           [Streptococcus pyogenes M49 591]
 gi|71903814|ref|YP_280617.1| D-alanyl-alanine synthetase A [Streptococcus pyogenes MGAS6180]
 gi|71910971|ref|YP_282521.1| D-alanyl-alanine synthetase A [Streptococcus pyogenes MGAS5005]
 gi|94988835|ref|YP_596936.1| D-alanyl-alanine synthetase A [Streptococcus pyogenes MGAS9429]
 gi|94992726|ref|YP_600825.1| D-alanyl-alanine synthetase A [Streptococcus pyogenes MGAS2096]
 gi|209559648|ref|YP_002286120.1| D-alanyl-alanine synthetase A [Streptococcus pyogenes NZ131]
 gi|22095564|sp|Q99Z34|DDL_STRP1 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|123639624|sp|Q48SP8|DDL_STRPM RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|166198506|sp|Q1JAX7|DDL_STRPB RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|166198507|sp|Q1JL27|DDL_STRPC RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|226729274|sp|B5XM63|DDL_STRPZ RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|13622520|gb|AAK34233.1| putative D-ala,D-ala ligase [Streptococcus pyogenes M1 GAS]
 gi|71802909|gb|AAX72262.1| D-alanine--D-alanine ligase [Streptococcus pyogenes MGAS6180]
 gi|71853753|gb|AAZ51776.1| D-alanine--D-alanine ligase [Streptococcus pyogenes MGAS5005]
 gi|94542343|gb|ABF32392.1| D-alanine--D-alanine ligase [Streptococcus pyogenes MGAS9429]
 gi|94546234|gb|ABF36281.1| D-alanine--D-alanine ligase [Streptococcus pyogenes MGAS2096]
 gi|209540849|gb|ACI61425.1| D-alanine--D-alanine ligase [Streptococcus pyogenes NZ131]
          Length = 348

 Score =  119 bits (299), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 95/337 (28%), Positives = 162/337 (48%), Gaps = 53/337 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVS------------------------QI 36
           + +L GG S+EREVS+ S ++   A+    F V                         ++
Sbjct: 6   LVLLYGGRSAEREVSVLSAESVMRAVNYDKFLVKTYFITQMGQFIKTQQFSEKPSESERL 65

Query: 37  DVDRSVGLVLAHLKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
             + ++ L    +KP        + F VLHG  GEDG +Q  LE+L +PY  + +++S++
Sbjct: 66  MTNETIELT-QKIKPSDIYEEGAVVFPVLHGPMGEDGSIQGFLEVLRMPYIGTNVMSSSI 124

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL----------ISPPYVIKPLKGGSSL 139
           +MDK+ +K+V+ S G+P     +     +D Q L          ++ P  +KP   GSS+
Sbjct: 125 AMDKITTKRVLESIGIPQVAYTVY----IDGQDLEACLVETLARLTFPIFVKPANMGSSV 180

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPK 196
           GI   K    + L      +  +  ++LIEQ V   E+  G++G+  +  T   E+ +  
Sbjct: 181 GI--SKAQTKVELRKAIQLALTYDSRVLIEQGVVAREIEVGLLGNDKVKSTLPGEV-IKD 237

Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256
            DFY Y+ KY     T  +PA +   I  E++  A +A +A+G  G+SR DF F     +
Sbjct: 238 VDFYDYQAKYVDNKITMAIPADVDQSIVTEMRSYAEVAFKALGGCGLSRCDF-FLTQDGQ 296

Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           V+  E+N  PG T  S++P +    G ++ +L+  +V
Sbjct: 297 VYLNELNTMPGFTQWSMYPLLWENMGLAYPDLIEELV 333


>gi|28895692|ref|NP_802042.1| D-alanyl-alanine synthetase A [Streptococcus pyogenes SSI-1]
 gi|306827069|ref|ZP_07460367.1| D-alanine-D-alanine ligase [Streptococcus pyogenes ATCC 10782]
 gi|39930902|sp|Q8K6X7|DDL_STRP3 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|28810941|dbj|BAC63875.1| putative D-ala,D-ala ligase [Streptococcus pyogenes SSI-1]
 gi|304430815|gb|EFM33826.1| D-alanine-D-alanine ligase [Streptococcus pyogenes ATCC 10782]
          Length = 348

 Score =  119 bits (299), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 95/337 (28%), Positives = 162/337 (48%), Gaps = 53/337 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVS------------------------QI 36
           + +L GG S+EREVS+ S ++   A+    F V                         ++
Sbjct: 6   LVLLYGGRSAEREVSVLSAESVMRAVNYDKFLVKTYFITQMGQFIKTQQFSEKPSESERL 65

Query: 37  DVDRSVGLVLAHLKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
             + ++ L    +KP        + F VLHG  GEDG +Q  LE+L +PY  + +++S++
Sbjct: 66  MTNETIELT-QKIKPSDIYEEGAVVFPVLHGPMGEDGSIQGFLEVLRMPYIGTNVMSSSI 124

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL----------ISPPYVIKPLKGGSSL 139
           +MDK+ +K+V+ S G+P     +     +D Q L          ++ P  +KP   GSS+
Sbjct: 125 AMDKITTKRVLESIGIPQVAYTVY----IDGQDLEACLVETLARLTFPIFVKPANMGSSV 180

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPK 196
           GI   K    + L      +  +  ++LIEQ V   E+  G++G+  +  T   E+ +  
Sbjct: 181 GI--SKAQTKVELRKAIQLALTYDSRVLIEQGVVAREIEVGLLGNDKVKSTLPGEV-IKD 237

Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256
            DFY Y+ KY     T  +PA +   I  E++  A +A +A+G  G+SR DF F     +
Sbjct: 238 VDFYDYQAKYVDNKITMAIPADVDQSIVTEMRSYAEVAFKALGGCGLSRCDF-FLTQDGQ 296

Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           V+  E+N  PG T  S++P +    G ++ +L+  +V
Sbjct: 297 VYLNELNTMPGFTQWSMYPLLWENMGLAYPDLIEELV 333


>gi|21222011|ref|NP_627790.1| D-alanine--D-lactate ligase [Streptomyces coelicolor A3(2)]
 gi|32171932|sp|Q9XAK7|VANL_STRCO RecName: Full=Putative D-alanine--D-lactate ligase; AltName:
           Full=Vancomycin resistance-like protein
 gi|5123870|emb|CAB45462.1| putative D-alanine:D-lactate ligase [Streptomyces coelicolor A3(2)]
          Length = 346

 Score =  119 bits (299), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 90/249 (36%), Positives = 128/249 (51%), Gaps = 18/249 (7%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+   VLHG  GEDG  Q +LEL  IPY    + +SAL MDK  +  V  S G+   P  
Sbjct: 92  DVVLPVLHGTLGEDGATQGLLELSGIPYVGCDVQSSALCMDKSLAYVVARSAGI-ATPDF 150

Query: 112 --LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS--SSWNHGDQLL 167
             +    T+D   L  P +V KP + GSS G+  + +    P DL  +  S+  +  ++L
Sbjct: 151 WTVTGDETIDPGRLTYPVFV-KPARSGSSFGVSKVCR----PEDLATAVESARRYDTKVL 205

Query: 168 IEQYVDGIELTCGVMG-DASL---DVTEIAVPKSDFYSYELKY---SSLNSTHVLPAKIP 220
           IE  V G E+ C ++G D  L   +V  IA+    F  ++ +     S NST V+PA IP
Sbjct: 206 IEAAVVGSEVGCAILGNDPDLIVGEVDRIALSHGFFRIHQEEQPENGSENSTPVVPADIP 265

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280
            +    VQ  A   ++A+GCRG+SR D +F     +V   E+N  PGMT  S +P M A 
Sbjct: 266 TEKRSLVQETAKAVYRALGCRGLSRVD-MFLKEDGEVVLNEVNTLPGMTSYSRYPRMMAA 324

Query: 281 AGYSFRELL 289
           AG    E++
Sbjct: 325 AGLPLSEVI 333


>gi|50914531|ref|YP_060503.1| D-alanyl-alanine synthetase A [Streptococcus pyogenes MGAS10394]
 gi|68051961|sp|Q5XB93|DDL_STRP6 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|50903605|gb|AAT87320.1| D-alanine--D-alanine ligase [Streptococcus pyogenes MGAS10394]
          Length = 348

 Score =  119 bits (299), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 95/337 (28%), Positives = 162/337 (48%), Gaps = 53/337 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVS------------------------QI 36
           + +L GG S+EREVS+ S ++   A+    F V                         ++
Sbjct: 6   LVLLYGGRSAEREVSVLSAESVMRAVNYDKFLVKTYFITQMGQFIRTQQFSEKPSESERL 65

Query: 37  DVDRSVGLVLAHLKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
             + ++ L    +KP        + F VLHG  GEDG +Q  LE+L +PY  + +++S++
Sbjct: 66  MTNETIELT-QKIKPSDIYEEGAVVFPVLHGPMGEDGSIQGFLEVLRMPYIGTNVMSSSI 124

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL----------ISPPYVIKPLKGGSSL 139
           +MDK+ +K+V+ S G+P     +     +D Q L          ++ P  +KP   GSS+
Sbjct: 125 AMDKITTKRVLESIGIPQVAYTVY----IDGQDLEACLVETLARLTFPIFVKPANMGSSV 180

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPK 196
           GI   K    + L      +  +  ++LIEQ V   E+  G++G+  +  T   E+ +  
Sbjct: 181 GI--SKAQTKVELRKAIQLALTYDSRVLIEQGVVAREIEVGLLGNDKVKSTLPGEV-IKD 237

Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256
            DFY Y+ KY     T  +PA +   I  E++  A +A +A+G  G+SR DF F     +
Sbjct: 238 VDFYDYQAKYVDNKITMAIPADVDQSIVTEMRSYAEVAFKALGGCGLSRCDF-FLTQDGQ 296

Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           V+  E+N  PG T  S++P +    G ++ +L+  +V
Sbjct: 297 VYLNELNTMPGFTQWSMYPLLWENMGLAYPDLIEELV 333


>gi|94994662|ref|YP_602760.1| D-alanyl-alanine synthetase A [Streptococcus pyogenes MGAS10750]
 gi|166198509|sp|Q1J5W7|DDL_STRPF RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|94548170|gb|ABF38216.1| D-alanine--D-alanine ligase [Streptococcus pyogenes MGAS10750]
          Length = 348

 Score =  119 bits (299), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 95/337 (28%), Positives = 162/337 (48%), Gaps = 53/337 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVS------------------------QI 36
           + +L GG S+EREVS+ S ++   A+    F V                         ++
Sbjct: 6   LVLLYGGRSAEREVSVLSAESVMRAVNYDKFLVKTYFITQMGQFIKTQQFSEKPSESERL 65

Query: 37  DVDRSVGLVLAHLKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
             + ++ L    +KP        + F VLHG  GEDG +Q  LE+L +PY  + +++S++
Sbjct: 66  MTNETIELT-QKIKPSDIYEEGAVVFPVLHGPMGEDGSIQGFLEVLRMPYIGTNVMSSSI 124

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL----------ISPPYVIKPLKGGSSL 139
           +MDK+ +K+V+ S G+P     +     +D Q L          ++ P  +KP   GSS+
Sbjct: 125 AMDKITTKRVLESIGIPQVAYTVY----IDGQDLEACLVETLARLTFPIFVKPANMGSSV 180

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPK 196
           GI   K    + L      +  +  ++LIEQ V   E+  G++G+  +  T   E+ +  
Sbjct: 181 GI--SKAQTKVELRKAIQLALTYDSRVLIEQGVIAREIEVGLLGNDKVKSTLPGEV-IKD 237

Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256
            DFY Y+ KY     T  +PA +   I  E++  A +A +A+G  G+SR DF F     +
Sbjct: 238 VDFYDYQAKYVDNKITMAIPADVDQSIVTEMRSYAEVAFKALGGCGLSRCDF-FLTQDGQ 296

Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           V+  E+N  PG T  S++P +    G ++ +L+  +V
Sbjct: 297 VYLNELNTMPGFTQWSMYPLLWENMGLAYPDLIEELV 333


>gi|289705874|ref|ZP_06502254.1| D-ala D-ala ligase [Micrococcus luteus SK58]
 gi|289557417|gb|EFD50728.1| D-ala D-ala ligase [Micrococcus luteus SK58]
          Length = 379

 Score =  119 bits (299), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 75/257 (29%), Positives = 129/257 (50%), Gaps = 22/257 (8%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV--CP 109
           D+ F +LHG +GEDG +Q + E L +PY   G+LASA+ MDK   K    + G+ V    
Sbjct: 111 DVVFPLLHGPWGEDGTLQGMFESLGLPYVGCGVLASAVGMDKHFMKVSFQAAGLEVGAWE 170

Query: 110 SILVNRFTMDSQHLISP------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
           +I    +  D +  ++       P  +KP + GSS GI  + +   +   + ++  ++  
Sbjct: 171 TITARDWARDPEAALARAGALAYPLFVKPARAGSSFGITRVTEPAGLRAAVEEARRFD-- 228

Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVP----------KSDFYSYELKYSSLNSTH 213
            ++++E  + G E+ C V+          ++P          ++ FY +E KY    +T 
Sbjct: 229 PKVVVEAGIVGREIECAVLDGHGSAAPRASLPGEIVVAHDEGETQFYDFESKYQDTGTTQ 288

Query: 214 V-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
           +  PA++P +  + ++ LA  A +A+   G+ R DF F P  R V   EIN  PG TP+S
Sbjct: 289 LSCPAELPEEEIERLRALAIRAFEAVDGSGLGRCDFFFTPDGRWVV-NEINTMPGFTPIS 347

Query: 273 IFPEMAAYAGYSFRELL 289
           ++P M    G S+ +L+
Sbjct: 348 MYPAMWERTGLSYDDLI 364


>gi|217076879|ref|YP_002334595.1| D-alanine--D-alanine ligase [Thermosipho africanus TCF52B]
 gi|254767745|sp|B7IGP0|DDL_THEAB RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|217036732|gb|ACJ75254.1| D-alanine--D-alanine ligase [Thermosipho africanus TCF52B]
          Length = 367

 Score =  119 bits (299), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 73/253 (28%), Positives = 132/253 (52%), Gaps = 18/253 (7%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+     HG+ GEDG +Q +LE L +PYT  G+ +S  +MDK+ +K ++    +PV   +
Sbjct: 94  DVCLLTFHGSNGEDGSIQGMLEFLNVPYTGCGMYSSMYTMDKVITKLILKEKNIPVVDFL 153

Query: 112 LVNR------FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
             N+      F    + ++  P ++KP + GSS+G  V K +    L+    ++++  D+
Sbjct: 154 YTNKKNYTNDFLNHCKEVLEYPMIVKPARLGSSIG--VKKVNDKCELEEAIETAFSFDDK 211

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPK--SDFYSYELKYSSLN---STHVLPAKIP 220
           +++E+++D  EL C VMG  ++ V+EI   K   DF+ Y  KY       S H++PA I 
Sbjct: 212 VIVEKWIDSRELNCAVMGYKNIVVSEIEEIKKQKDFFDYNEKYVQKGKKFSNHIIPAPID 271

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280
            ++   ++ +A     A+ C G  R DFL      K++  E+N  PG     ++      
Sbjct: 272 ENLKNTIKSIARDTFNALECHGNIRIDFLLSK-DNKIYVNEVNSIPGALSYYLW----QM 326

Query: 281 AGYSFRELLLWMV 293
           +G++F +++  M+
Sbjct: 327 SGFTFSQVIDNMI 339


>gi|187235564|gb|ACD01995.1| putative D-alanine-D-alanine ligase [Clostridium septicum]
          Length = 211

 Score =  119 bits (299), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 72/215 (33%), Positives = 116/215 (53%), Gaps = 8/215 (3%)

Query: 58  LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI---LVN 114
           LHG FGEDG VQ++L+ L+IPY+    L+SAL MDK  +K+++ S  +     +    V 
Sbjct: 2   LHGKFGEDGTVQSVLQTLDIPYSGCEPLSSALCMDKDLTKRILKSNNIRTARWLNVRSVE 61

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
               D    +  P  IKP  GGSS+    I K + +   + +   W++  +++IE+++ G
Sbjct: 62  EIDYDKIEEMKYPVFIKPTNGGSSVATFKITKKEDVEEAVREGLKWDN--EVMIEEFIKG 119

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
            E+TC V       V  I  PK+DF+ Y  KYS   +  V+  ++   ++KEV+++A   
Sbjct: 120 EEITCPVFKGEMFPVIAIR-PKTDFFDYTQKYSGDGAEEVI-IELEEKLHKEVEQMALDT 177

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
           ++A+ C   SR D +     R  + LE+N  PGMT
Sbjct: 178 YKALKCSVYSRIDMIVTE-DRTPYILELNTFPGMT 211


>gi|94990738|ref|YP_598838.1| D-alanyl-alanine synthetase A [Streptococcus pyogenes MGAS10270]
 gi|166198508|sp|Q1JG50|DDL_STRPD RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|94544246|gb|ABF34294.1| D-alanine--D-alanine ligase [Streptococcus pyogenes MGAS10270]
          Length = 348

 Score =  119 bits (299), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 95/337 (28%), Positives = 162/337 (48%), Gaps = 53/337 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVS------------------------QI 36
           + +L GG S+EREVS+ S ++   A+    F V                         ++
Sbjct: 6   LVLLYGGRSAEREVSVLSAESVMRAVNYDKFLVKTYFITQMGQFIKTQQFSEKPSESERL 65

Query: 37  DVDRSVGLVLAHLKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
             + ++ L    +KP        + F VLHG  GEDG +Q  LE+L +PY  + +++S++
Sbjct: 66  MTNETIELT-QKIKPSDIYEEGAVVFPVLHGPMGEDGSIQGFLEVLRMPYIGTNVMSSSI 124

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL----------ISPPYVIKPLKGGSSL 139
           +MDK+ +K+V+ S G+P     +     +D Q L          ++ P  +KP   GSS+
Sbjct: 125 AMDKITTKRVLESIGIPQVAYTVY----IDGQDLEACLVETLARLTFPIFVKPANMGSSV 180

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPK 196
           GI   K    + L      +  +  ++LIEQ V   E+  G++G+  +  T   E+ +  
Sbjct: 181 GI--SKAQTKVELRKAIQLALTYDSRVLIEQGVVAREIEVGLLGNDKVKSTLPGEV-IKD 237

Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256
            DFY Y+ KY     T  +PA +   I  E++  A +A +A+G  G+SR DF F     +
Sbjct: 238 VDFYDYQAKYVDNKITMAIPADVDQSIVTEMRSYAEVAFKALGGCGLSRCDF-FLTQDGQ 296

Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           V+  E+N  PG T  S++P +    G ++ +L+  +V
Sbjct: 297 VYLNELNTMPGFTQWSMYPLLWENMGLAYPDLIEVLV 333


>gi|269217857|ref|ZP_06161711.1| D-alanine--D-alanine ligase [Actinomyces sp. oral taxon 848 str.
           F0332]
 gi|269212792|gb|EEZ79132.1| D-alanine--D-alanine ligase [Actinomyces sp. oral taxon 848 str.
           F0332]
          Length = 281

 Score =  119 bits (299), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 71/258 (27%), Positives = 138/258 (53%), Gaps = 15/258 (5%)

Query: 33  VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
           V  +DVD ++   L  ++PD+ + ++HG+ GEDG +Q++LEL+ +PY  +   A  ++ D
Sbjct: 3   VKVLDVDANLLQSLKSMQPDVVWPLIHGSTGEDGSLQSLLELVGVPYVGTPPAACRIASD 62

Query: 93  KMRSKQVVSSCGVPVCPSILVNRFTMDS----------QHLISPPYVIKPLKGGSSLGII 142
           K  +  V+S+ G+ V  S+ + +               +     P V+KP +GGS+LG+ 
Sbjct: 63  KAVAGAVLSTAGLNVPDSVTIPQKLFREVGVGQVLDLIKARFDFPLVVKPAQGGSALGVT 122

Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM--GDASLDVTEIAVPKSDFY 200
           ++     +P  ++   +++  ++  +EQY++G E+   V+  G     +  + +     Y
Sbjct: 123 IVASAAGLPRAMVDCFAYD--ERARVEQYIEGAEVAVSVVQTGSEPRALPPVEIAADGPY 180

Query: 201 SYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260
            Y+ +Y +  + + +PA++  +    V+  A  AH  +G R +SR+D + D   R  + L
Sbjct: 181 DYDARYFAGRAEYFVPARLSEEDTAAVKEAAERAHLVLGLRYLSRTDIILDDAGR-AWIL 239

Query: 261 EINVQPGMTPVSIFPEMA 278
           ++NV PGMT  S+FP+ A
Sbjct: 240 DVNVAPGMTETSLFPQAA 257


>gi|310640274|ref|YP_003945032.1| d-alanine--d-alanine ligase b [Paenibacillus polymyxa SC2]
 gi|309245224|gb|ADO54791.1| D-alanine--D-alanine ligase B [Paenibacillus polymyxa SC2]
          Length = 362

 Score =  119 bits (299), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 92/339 (27%), Positives = 149/339 (43%), Gaps = 48/339 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFK------------------------VSQI 36
           + ++ GG S E EVSL +  A  +A     ++                        V Q+
Sbjct: 8   VGLVYGGKSGEHEVSLQTAYAVMNAFNYEKYEIIPFYITKAGDWRRGTLLNAPLTTVEQL 67

Query: 37  DVDRSVGLVLAHLKP-----------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
            ++ + G   A L             D+ F +LHG FGEDG +Q + E+ ++PY  +G+L
Sbjct: 68  KLEHAEGGTKAALDTLFGKLYGEQTLDVLFPLLHGTFGEDGTIQGLFEMADMPYVGAGVL 127

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISP-------PYVIKPLKGG 136
           ASA  MDK   K++    G+P       N  ++      L+         P  +KP   G
Sbjct: 128 ASAAGMDKGVMKKLFEHAGLPQVKYCYFNSTQWAQTGHDLVRNIETELGYPCFVKPANLG 187

Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS--LDVTEIAV 194
           SS+GI   K      L+     +     ++++E+YVD  E+   V+G+      V    V
Sbjct: 188 SSVGI--SKASNREELEKAVDLALQFDLKVIVEEYVDAREIEVSVLGNDEPIASVPGEIV 245

Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
             SD+Y Y  KY+   S  ++PA +  ++   ++  A  A +A+   GISR+DF      
Sbjct: 246 SSSDYYDYAAKYTDGQSEMLIPAPLDEEVADRIRESALQAFRALEGCGISRADFFVRRSD 305

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
             +   E+N  PG TP S++P +    G S+  LL  M+
Sbjct: 306 GHILINEVNTMPGFTPFSMYPLLWRETGVSYVNLLDRMI 344


>gi|19746380|ref|NP_607516.1| D-alanyl-alanine synthetase A [Streptococcus pyogenes MGAS8232]
 gi|139473555|ref|YP_001128271.1| D-alanyl-alanine synthetase A [Streptococcus pyogenes str.
           Manfredo]
 gi|25452913|sp|Q8P0C4|DDL_STRP8 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|166198510|sp|A2RDW0|DDL_STRPG RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|19748578|gb|AAL98015.1| putative D-ala,D-ala ligase [Streptococcus pyogenes MGAS8232]
 gi|134271802|emb|CAM30035.1| D-alanine--D-alanine ligase [Streptococcus pyogenes str. Manfredo]
          Length = 348

 Score =  119 bits (299), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 95/337 (28%), Positives = 162/337 (48%), Gaps = 53/337 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVS------------------------QI 36
           + +L GG S+EREVS+ S ++   A+    F V                         ++
Sbjct: 6   LVLLYGGRSAEREVSVLSAESVMRAVNYDKFLVKTYFITQMGQFIRTQQFSEKPSESERL 65

Query: 37  DVDRSVGLVLAHLKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
             + ++ L    +KP        + F VLHG  GEDG +Q  LE+L +PY  + +++S++
Sbjct: 66  MTNETIELT-QKIKPSDIYEEGAVVFPVLHGPMGEDGSIQGFLEVLRMPYIGTNVMSSSI 124

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL----------ISPPYVIKPLKGGSSL 139
           +MDK+ +K+V+ S G+P     +     +D Q L          ++ P  +KP   GSS+
Sbjct: 125 AMDKITTKRVLESIGIPQVAYTVY----IDGQDLEACLVETLARLTFPIFVKPANMGSSV 180

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPK 196
           GI   K    + L      +  +  ++LIEQ V   E+  G++G+  +  T   E+ +  
Sbjct: 181 GI--SKAQTKVELRKAIQLALTYDSRVLIEQGVVAREIEVGLLGNDKVKSTLPGEV-IKD 237

Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256
            DFY Y+ KY     T  +PA +   I  E++  A +A +A+G  G+SR DF F     +
Sbjct: 238 VDFYDYQAKYVDNKITMAIPADVDQSIVTEMRSYAEVAFKALGGCGLSRCDF-FLTQDGQ 296

Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           V+  E+N  PG T  S++P +    G ++ +L+  +V
Sbjct: 297 VYLNELNTMPGFTQWSMYPLLWENMGLAYPDLIEELV 333


>gi|288803981|ref|ZP_06409403.1| D-alanine--D-alanine ligase [Prevotella melaninogenica D18]
 gi|288333551|gb|EFC72004.1| D-alanine--D-alanine ligase [Prevotella melaninogenica D18]
          Length = 332

 Score =  119 bits (299), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 96/330 (29%), Positives = 155/330 (46%), Gaps = 43/330 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---DRSVGLVLAHLKP------ 51
           +A++ GG SSE +VS+ SG+   S  +   + +  +DV   D +V L    L P      
Sbjct: 8   IAIVCGGDSSEHDVSMRSGQGLYSFFDKERYNIYIVDVKGIDWNVELPDGSLAPIDKNDF 67

Query: 52  -----------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
                      D A+  +HG  GE+G++Q   +L+++PY+  G+L  AL+ DK      +
Sbjct: 68  SFVMNGERVEFDYAYITIHGQPGENGVMQGYFDLIQLPYSTGGVLVEALTFDKYVLNNYL 127

Query: 101 SSCGVPVCPSILVNRFTMDSQHLISP----PYVIKPLKGGSSLGIIVIKK-DQSIP---L 152
              G+ V  SIL+ R     +  I      P  +KP   GSS G+  +K  DQ  P   +
Sbjct: 128 RGFGIKVADSILLRRGEEYDEAEIEKRLGMPCFVKPASDGSSFGVSKVKNIDQLAPALRV 187

Query: 153 DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV----TEIAVPKSDFYSYELKYSS 208
             +QS      D+++IE ++DG+E++ GV       V    TE+ V  ++F+ Y  KY+ 
Sbjct: 188 AFMQS------DEVMIEAFMDGMEISQGVYKTKDKAVVFPATEV-VTSNEFFDYNAKYNG 240

Query: 209 LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF--DPLSRKVF-WLEINVQ 265
                + PA++  +  K V       +  +   GI R D++   D   + V   LEIN  
Sbjct: 241 -QVEEITPARMSDETAKRVAAETSRIYDILHANGIIRIDYIISKDKDGKDVINMLEINTT 299

Query: 266 PGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           PGMT  S  P+    AG   + +L  +VE+
Sbjct: 300 PGMTVTSFIPQQVRAAGLDIKNVLSDIVEN 329


>gi|290892953|ref|ZP_06555943.1| D-alanine-D-alanine ligase [Listeria monocytogenes FSL J2-071]
 gi|290557529|gb|EFD91053.1| D-alanine-D-alanine ligase [Listeria monocytogenes FSL J2-071]
          Length = 370

 Score =  119 bits (299), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 73/259 (28%), Positives = 132/259 (50%), Gaps = 23/259 (8%)

Query: 53  LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
           + F +LHG  GEDG VQ + E+L IPY  +G+LAS+ +MDK+  K++ +  G+P  P++ 
Sbjct: 100 VVFPLLHGPNGEDGTVQGLFEVLNIPYVGNGVLASSAAMDKIVMKKIFADAGIPQVPAVA 159

Query: 113 VN---------RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
           V              + + +++ P  +KP   GSS+GI   K      L    + ++ + 
Sbjct: 160 VRLIDWKNYQAEMITEMEEVLTYPVFVKPANLGSSVGI--SKATNKKELADAMTEAFLYD 217

Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK--------SDFYSYELKYSSLNSTHVL 215
            ++++EQ V   E+  GV+G+   D    +VP         + FY Y+ KY   N+  ++
Sbjct: 218 RRVVVEQGVVAREIEMGVLGN---DTPVCSVPGEILPEGAVATFYDYKAKYQDNNTALII 274

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275
           P ++  +I ++++  A  A   +   G+ R+DF       ++F  E+N  PG TP S++P
Sbjct: 275 PTEVAPEILEQMKEYAVQAFLGLDASGLVRADFFLTE-DNQLFLNEVNTMPGFTPYSMYP 333

Query: 276 EMAAYAGYSFRELLLWMVE 294
            +    G  +  L+  +V+
Sbjct: 334 LLWQETGLPYGALIERLVD 352


>gi|5759265|gb|AAD51060.1|AF175293_5 D-alanine:D-lactate ligase [Enterococcus faecium]
          Length = 343

 Score =  119 bits (299), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 93/338 (27%), Positives = 164/338 (48%), Gaps = 49/338 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------------------- 38
           +AVL GG S E  VS+ S    A+ ++   ++   I +                      
Sbjct: 6   VAVLFGGCSEEHNVSIKSAMEIAANIDTKKYQPYYIGITKSGVWKMCEKPCLEWEQYAGD 65

Query: 39  ------DRSV-GLVLA-----HLKP-DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
                 DRS  GL++       ++P D+   ++HG FGEDG +Q +LEL  IPY    I 
Sbjct: 66  PVVFSPDRSTHGLLIQKDTGYEIQPVDVGLPMIHGKFGEDGSIQGLLELSGIPYVGCDIQ 125

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIV 143
           +S   MDK  +  VV + G+ V P   IL     ++++  + P +V KP + GSS G+  
Sbjct: 126 SSVTCMDKALAYTVVKNAGIAV-PGFRILQEGDRLETEDFVYPVFV-KPARSGSSFGVNK 183

Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDF 199
           + K + +   +  +  ++   ++LIE+ V G E+ C ++G+     + +V +I +    F
Sbjct: 184 VCKAEELQAAIEDARKYD--SKILIEEAVTGSEVGCAILGNGNDLMAGEVDQIELRHGFF 241

Query: 200 YSYEL---KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256
             ++    +  S N+   +PA +P ++ + +Q+ A   ++ +GCRG++R D LF      
Sbjct: 242 KIHQEAQPEKGSENAVIRVPAALPDEVIERIQKTAMKIYRILGCRGLARID-LFLREDGC 300

Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           +   E+N  PG T  S +P M   AG++  E+L  ++E
Sbjct: 301 IVLNEVNTMPGFTSYSRYPRMMTAAGFTLTEILDRLIE 338


>gi|283471299|emb|CAQ50510.1| D-alanine--D-alanine ligase (D-alanylalanine
           synthetase)(D-Ala-D-Ala ligase) [Staphylococcus aureus
           subsp. aureus ST398]
          Length = 356

 Score =  119 bits (299), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 89/300 (29%), Positives = 151/300 (50%), Gaps = 32/300 (10%)

Query: 8   ISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP-DLAFNVLHGNFGEDG 66
           I S  E+ L +G+A          ++SQ+  + S G      +P D  F +LHG  GEDG
Sbjct: 59  IKSTDELHLENGEA---------LEISQLLKESSSG------QPYDAVFPLLHGPNGEDG 103

Query: 67  LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-QHLI- 124
            +Q + E+L++PY  +G+L++A SMDK+  KQ+    G+P  P I   R   +  +H I 
Sbjct: 104 TIQGLFEVLDVPYVGNGVLSAASSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYEHNIL 163

Query: 125 -------SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
                  + P  +KP   GSS+GI     +  +   + ++  ++   +L+IEQ V+  E+
Sbjct: 164 KLVNDKLNYPVFVKPANLGSSVGISKCNNEAELKEGIKEAFQFDR--KLVIEQGVNAREI 221

Query: 178 TCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
              V+G+   + T   E+ V    FY Y+ KY        +PA +  D+   ++ +A  A
Sbjct: 222 EVAVLGNDYPEATWPGEV-VKDVAFYDYKSKYKDGKVQLQIPADLDEDVQLTLRNMALEA 280

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            +A  C G+ R+DF F     +++  E N  PG T  S++P++    G S+ EL+  ++E
Sbjct: 281 FKATDCSGLVRADF-FVTEDNQIYINETNAMPGFTAFSMYPKLWENMGLSYPELITKLIE 339


>gi|254994496|ref|ZP_05276686.1| D-alanyl-alanine synthetase A [Listeria monocytogenes FSL J2-064]
          Length = 318

 Score =  119 bits (299), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 73/259 (28%), Positives = 132/259 (50%), Gaps = 23/259 (8%)

Query: 53  LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
           + F +LHG  GEDG VQ + E+L IPY  +G+LAS+ +MDK+  K++ +  G+P  P++ 
Sbjct: 48  VVFPLLHGPNGEDGTVQGLFEVLNIPYVGNGVLASSAAMDKIVMKKIFADAGIPQVPAVA 107

Query: 113 VN---------RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
           V              + + +++ P  +KP   GSS+GI   K      L    + ++ + 
Sbjct: 108 VRLIDWKNYQAEMVAEMEEVLTYPVFVKPANLGSSVGI--SKATNKKELADAMTEAFLYD 165

Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK--------SDFYSYELKYSSLNSTHVL 215
            ++++EQ V   E+  GV+G+   D    +VP         + FY Y+ KY   N+  ++
Sbjct: 166 RRVVVEQGVVAREIEMGVLGN---DTPVCSVPGEILPEGAVATFYDYKAKYQDNNTALII 222

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275
           P ++  +I ++++  A  A   +   G+ R+DF       ++F  E+N  PG TP S++P
Sbjct: 223 PTEVDPEILEQMKEYAVQAFLGLDASGLVRADFFLTE-DNQLFLNEVNTMPGFTPYSMYP 281

Query: 276 EMAAYAGYSFRELLLWMVE 294
            +    G  +  L+  +V+
Sbjct: 282 LLWQETGLPYGALIERLVD 300


>gi|223932693|ref|ZP_03624692.1| D-alanine/D-alanine ligase [Streptococcus suis 89/1591]
 gi|330832452|ref|YP_004401277.1| D-alanine--D-alanine ligase [Streptococcus suis ST3]
 gi|223898663|gb|EEF65025.1| D-alanine/D-alanine ligase [Streptococcus suis 89/1591]
 gi|329306675|gb|AEB81091.1| D-alanine--D-alanine ligase [Streptococcus suis ST3]
          Length = 348

 Score =  119 bits (299), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 94/330 (28%), Positives = 158/330 (47%), Gaps = 43/330 (13%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH-------------- 48
           +L GG S+EREVS+ S ++   A+    F V    + ++   +                 
Sbjct: 8   LLYGGRSAEREVSVLSAESVMRAINYDKFFVKTYFISQTGDFIKTQEFSQTPSADEKLMT 67

Query: 49  ---------LKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
                    ++P        + F VLHG  GEDG +Q  LE+L +PY  + IL+S+++MD
Sbjct: 68  NATIVEEQKIRPSDIYEEKAVVFPVLHGPMGEDGSIQGFLEVLRMPYVGTNILSSSVAMD 127

Query: 93  KMRSKQVVSSCGVPVCPSILV------NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           K+ +K+V+ S G+   P + V      +    + +  ++ P  +KP   GSS+GI   K 
Sbjct: 128 KITTKRVLESAGISQVPYVAVIEGENIDDKIAEIEGKLTYPVFVKPANMGSSVGI--SKA 185

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYE 203
           +    L      ++ +  ++L+EQ V+  E+  G++G+A +  T   E+ V    FY Y+
Sbjct: 186 EDLAGLHKALDLAFKYDSRVLVEQGVNAREIEVGLLGNADVKTTLPGEV-VKDVAFYDYD 244

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            KY     T  +PAKI   I   ++  A  A +AIG  G+SR DF        +F  E+N
Sbjct: 245 AKYIDNKITMEIPAKIDEAIMDTMRDNAAKAFRAIGGCGLSRCDFFLTE-DGDIFLNELN 303

Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
             PG T  S++P +    G ++ +L+  +V
Sbjct: 304 TMPGFTQWSMYPLLWDNMGLAYPDLIEELV 333


>gi|256786904|ref|ZP_05525335.1| D-alanine:D-lactate ligase [Streptomyces lividans TK24]
 gi|289770797|ref|ZP_06530175.1| D-alanine:D-lactate ligase [Streptomyces lividans TK24]
 gi|289700996|gb|EFD68425.1| D-alanine:D-lactate ligase [Streptomyces lividans TK24]
          Length = 346

 Score =  119 bits (298), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 90/250 (36%), Positives = 128/250 (51%), Gaps = 20/250 (8%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+   VLHG  GEDG  Q +LEL  IPY    + +SAL MDK  +  V  S G+   P  
Sbjct: 92  DVVLPVLHGTLGEDGATQGLLELSGIPYVGCDVQSSALCMDKSLAYVVARSAGI-ATPDF 150

Query: 112 --LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS--SSWNHGDQLL 167
             +    T+D   L  P +V KP + GSS G+  + +    P DL  +  S+  +  ++L
Sbjct: 151 WTVTGDETIDPGRLTYPVFV-KPARSGSSFGVSKVCR----PEDLATAVESARRYDTKVL 205

Query: 168 IEQYVDGIELTCGVMGDASLD-----VTEIAVPKSDFYSYELKY---SSLNSTHVLPAKI 219
           IE  V G E+ C ++G+  LD     V  IA+    F  ++ +     S NST V+PA I
Sbjct: 206 IEAAVVGSEVGCAILGN-DLDLIVGEVDRIALSHGFFRIHQEEQPENGSENSTPVVPADI 264

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279
           P +    VQ  A   ++A+GCRG+SR D +F     +V   E+N  PGMT  S +P M A
Sbjct: 265 PTEKRSLVQETAKAVYRALGCRGLSRVD-MFLKEDGEVVLNEVNTLPGMTSYSRYPRMMA 323

Query: 280 YAGYSFRELL 289
            AG    E++
Sbjct: 324 AAGLPLSEVI 333


>gi|39936587|ref|NP_948863.1| putative D-alanyl-D-alanine ligase A [Rhodopseudomonas palustris
           CGA009]
 gi|39650443|emb|CAE28966.1| putative D-alanyl-D-alanine ligase A [Rhodopseudomonas palustris
           CGA009]
          Length = 329

 Score =  119 bits (298), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 100/322 (31%), Positives = 145/322 (45%), Gaps = 45/322 (13%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR----SVGLVLAHLKP------- 51
           +L GG S ER VS++S +A  SAL DA       D DR    S   +LAH +P       
Sbjct: 5   ILFGGTSKERLVSVASAQALHSALPDADLWFWNDD-DRVHAVSAQALLAHARPFEEAFVP 63

Query: 52  --------DLAFNV-----------LHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
                   + A +            LHG   E+G +QA+ EL  +P+T SG  AS L+ D
Sbjct: 64  DGEDIGPLETALDRAAAEQRLLVLGLHGGVAENGELQAMCELRRVPFTGSGSAASHLAFD 123

Query: 93  KMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152
           K+ +K+  +  GV     I +     ++        + KP   GSS G+  I   Q    
Sbjct: 124 KVAAKRFAAIAGVRTVTGIALA--DAEAALEAHGRLIAKPACDGSSYGLFFINAKQ---- 177

Query: 153 DLLQSSSWNHGDQLLIEQYVDGIELTCGVM--GDASLDV---TEIAVPKSDFYSYELKYS 207
           DL+        +  LIE +V G+E TCGV+   D SL      EI VP    + Y  KY 
Sbjct: 178 DLVAVRHAAKTEDYLIEPFVAGVEATCGVLEAEDGSLRALPPIEI-VPADGGFDYTAKYL 236

Query: 208 SLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPG 267
           + ++  + P +   +I   +   A  AH+ + CRG SRSDF+         +LE N  PG
Sbjct: 237 AKSTQEICPGRFAPEIASAIMDYAVRAHRVMSCRGYSRSDFIVG--KDGPIFLETNTLPG 294

Query: 268 MTPVSIFPEMAAYAGYSFRELL 289
           +T  S++P+     G  F + L
Sbjct: 295 LTKASLYPKALNALGIPFVDFL 316


>gi|313634152|gb|EFS00812.1| D-alanine--D-alanine ligase [Listeria seeligeri FSL N1-067]
          Length = 370

 Score =  119 bits (298), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 77/282 (27%), Positives = 145/282 (51%), Gaps = 29/282 (10%)

Query: 36  IDVDRSVGLVL--AHLKPD----LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
           I+ ++S G ++  A L+ D    + F +LHG  GEDG VQ + E+L IPY  +G+LAS+ 
Sbjct: 77  IETEKSSGELISPAVLEADGQETVVFPLLHGPNGEDGTVQGLFEVLNIPYVGNGVLASSA 136

Query: 90  SMDKMRSKQVVSSCGVPVCPSILV---------NRFTMDSQHLISPPYVIKPLKGGSSLG 140
           +MDK+  K++ +   +P  P++ V         +    + + ++  P  +KP   GSS+G
Sbjct: 137 AMDKIVMKKIFADAAIPQVPAVAVRLIDWKNFKDEMIAEMEEVLEYPVFVKPANLGSSVG 196

Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK---- 196
           I      Q +   + ++  ++   ++++EQ V   E+  GV+G+   D    +VP     
Sbjct: 197 ISKATNKQELTEAMTEAFLYDR--RVVVEQGVVAREIEMGVLGN---DTPICSVPGEILP 251

Query: 197 ----SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
               + FY Y+ KY   N+T ++P ++  ++  +++  A  A   +   G+ R+DF    
Sbjct: 252 EGAVAKFYDYKAKYQDNNTTLIIPTEVEPEVLAQMKEYAIQAFLGLDASGLVRADFFLTD 311

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
              ++F  E+N  PG TP S++P +   +G  +  L+  +V+
Sbjct: 312 -DNQLFLNEVNTMPGFTPYSMYPLLWQESGLPYPALIERLVD 352


>gi|46907086|ref|YP_013475.1| D-alanyl-alanine synthetase A [Listeria monocytogenes serotype 4b
           str. F2365]
 gi|47092061|ref|ZP_00229854.1| D-alanine--D-alanine ligase [Listeria monocytogenes str. 4b H7858]
 gi|226223473|ref|YP_002757580.1| D-alanine--D-alanine ligase [Listeria monocytogenes Clip81459]
 gi|254852347|ref|ZP_05241695.1| D-Ala-D-Ala ligase [Listeria monocytogenes FSL R2-503]
 gi|254931236|ref|ZP_05264595.1| D-Ala-D-Ala ligase [Listeria monocytogenes HPB2262]
 gi|255522056|ref|ZP_05389293.1| D-alanyl-alanine synthetase A [Listeria monocytogenes FSL J1-175]
 gi|67460120|sp|Q721W2|DDL_LISMF RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|46880353|gb|AAT03652.1| D-alanine--D-alanine ligase [Listeria monocytogenes serotype 4b
           str. F2365]
 gi|47019501|gb|EAL10241.1| D-alanine--D-alanine ligase [Listeria monocytogenes str. 4b H7858]
 gi|225875935|emb|CAS04639.1| D-alanine--D-alanine ligase [Listeria monocytogenes serotype 4b
           str. CLIP 80459]
 gi|258605653|gb|EEW18261.1| D-Ala-D-Ala ligase [Listeria monocytogenes FSL R2-503]
 gi|293582785|gb|EFF94817.1| D-Ala-D-Ala ligase [Listeria monocytogenes HPB2262]
 gi|328467129|gb|EGF38219.1| D-alanyl-alanine synthetase A [Listeria monocytogenes 1816]
 gi|328475551|gb|EGF46310.1| D-alanyl-alanine synthetase A [Listeria monocytogenes 220]
 gi|332311262|gb|EGJ24357.1| D-alanine--D-alanine ligase [Listeria monocytogenes str. Scott A]
          Length = 370

 Score =  119 bits (298), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 73/259 (28%), Positives = 132/259 (50%), Gaps = 23/259 (8%)

Query: 53  LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
           + F +LHG  GEDG VQ + E+L IPY  +G+LAS+ +MDK+  K++ +  G+P  P++ 
Sbjct: 100 VVFPLLHGPNGEDGTVQGLFEVLNIPYVGNGVLASSAAMDKIVMKKIFADAGIPQVPAVA 159

Query: 113 VN---------RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
           V              + + +++ P  +KP   GSS+GI   K      L    + ++ + 
Sbjct: 160 VRLIDWKNYQAEMVAEMEEVLTYPVFVKPANLGSSVGI--SKATNKKELADAMTEAFLYD 217

Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK--------SDFYSYELKYSSLNSTHVL 215
            ++++EQ V   E+  GV+G+   D    +VP         + FY Y+ KY   N+  ++
Sbjct: 218 RRVVVEQGVVAREIEMGVLGN---DTPVCSVPGEILPEGAVATFYDYKAKYQDNNTALII 274

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275
           P ++  +I ++++  A  A   +   G+ R+DF       ++F  E+N  PG TP S++P
Sbjct: 275 PTEVDPEILEQMKEYAVQAFLGLDASGLVRADFFLTE-DNQLFLNEVNTMPGFTPYSMYP 333

Query: 276 EMAAYAGYSFRELLLWMVE 294
            +    G  +  L+  +V+
Sbjct: 334 LLWQETGLPYGALIERLVD 352


>gi|34540521|ref|NP_905000.1| D-alanyl-alanine synthetase A [Porphyromonas gingivalis W83]
 gi|39930822|sp|Q7MWA2|DDL_PORGI RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|34396834|gb|AAQ65899.1| D-alanine--D-alanine ligase [Porphyromonas gingivalis W83]
          Length = 330

 Score =  119 bits (298), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 91/326 (27%), Positives = 155/326 (47%), Gaps = 36/326 (11%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------------------- 40
           +AV+ GG S E  VSL S     S L    F    + ++R                    
Sbjct: 6   VAVIAGGYSGEHSVSLKSAAGILSWLGSEPFSTFLVLIERDRWSVRVSEQREVPLDKNDF 65

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           S  L    ++ D A+  +HG  GE+GL+Q  L+++ IPY     L  +L+ +K    + +
Sbjct: 66  SFDLDGERIRFDYAYITIHGTPGENGLLQGYLDMIGIPYNTGDTLVESLTFNKYVCNRFL 125

Query: 101 SSCGVPVCPSI-LVNRFTM-DSQHLISP---PYVIKPLKGGSSLGII-VIKKDQSIPLDL 154
           S  G+ +  S+ L  R T  D   LI+    P  +KP  GGSS+    V++  Q +P   
Sbjct: 126 SGFGIRIADSMRLTGRDTQPDVADLIARMGLPLFVKPNVGGSSIATTKVVEAAQLLP--- 182

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGD----ASLDVTEIAVPKSDFYSYELKYSSLN 210
               +++ G++++IE+ + G E+TCG         +L VTE+ V  ++F+ ++ KY+   
Sbjct: 183 AIEQAFSEGEEVMIERLICGTEVTCGAFLRKKEVVALPVTEV-VAHNEFFDFDAKYNGA- 240

Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270
              + PA+I  +  + +Q +    ++ +  RGI R D++ +        LE+N  PGMTP
Sbjct: 241 VEEITPARISDEATRLIQTMTARIYELLNARGIIRVDYIIEADGIPTL-LEVNTTPGMTP 299

Query: 271 VSIFPEMAAYAGYSFRELLLWMVEDA 296
            S  P+    AG   +E+L  ++ D 
Sbjct: 300 TSFIPQQVRAAGMDMKEVLCTIIRDG 325


>gi|322412133|gb|EFY03041.1| D-alanyl-alanine synthetase A [Streptococcus dysgalactiae subsp.
           dysgalactiae ATCC 27957]
          Length = 348

 Score =  119 bits (298), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 91/332 (27%), Positives = 166/332 (50%), Gaps = 43/332 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           + +L GG S+EREVS+ S ++   A+    F V    + ++   +               
Sbjct: 6   LVLLYGGRSAEREVSVLSAESVMRAVNYDKFLVKTYFISQTGQFIKTQEFSEKPAATERL 65

Query: 49  -----------LKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
                      +KP        + F +LHG  GEDG +Q  LE+L +PY  + IL+S+++
Sbjct: 66  MTNSTIQYEQQIKPSDIYEEDAVVFPLLHGPMGEDGSIQGFLEVLRMPYVGTNILSSSVA 125

Query: 91  MDKMRSKQVVSSCGVP-VCPSILVNRFTM-----DSQHLISPPYVIKPLKGGSSLGIIVI 144
           MDK+ +K+V+ S G+P V  ++ ++   +     ++   ++ P  +KP   GSS+GI   
Sbjct: 126 MDKITTKRVLESAGIPQVAYTVYIDGQDLEACLTETLATLAFPIFVKPANMGSSVGISKA 185

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYS 201
           +  + +   +  + +++   ++LIEQ V   E+  G++G+  +  T   E+ V   DFY 
Sbjct: 186 QTKEELKEAIQLALTYDS--RVLIEQGVVAREIEVGLLGNTEVKSTLPGEV-VKDVDFYD 242

Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
           Y+ KY     T  +PA+I  D   +++  A  A +A+G  G+SR DF F     +++  E
Sbjct: 243 YKAKYIDNKITMAIPAEINQDTMTKMRTYAESAFKALGGCGLSRCDF-FLSQDGQIYLNE 301

Query: 262 INVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +N  PG T  S++P +    G ++ +L+  +V
Sbjct: 302 LNTMPGFTQWSMYPLLWENMGLAYSDLIEELV 333


>gi|300790098|ref|YP_003770389.1| D-alanine-D-alanine ligase [Amycolatopsis mediterranei U32]
 gi|299799612|gb|ADJ49987.1| D-alanine-D-alanine ligase [Amycolatopsis mediterranei U32]
          Length = 342

 Score =  119 bits (298), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 82/252 (32%), Positives = 131/252 (51%), Gaps = 18/252 (7%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV--PVCP 109
           D+   VLHG  GEDG +Q +LEL  IPY    + +SAL MDK  +  V +S G+  P   
Sbjct: 90  DVVLPVLHGKLGEDGAMQGLLELSGIPYAGCDVPSSALCMDKSLAYVVAASAGIATPKFR 149

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
           ++L      D     + P  +KP + GSS G+  +   + +   +  S++  +  ++LIE
Sbjct: 150 TVLAG----DDAGAFTYPVFVKPARSGSSFGVSKVSGREELAAAI--STAAQYDAKVLIE 203

Query: 170 QYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKY---SSLNSTHVLPAKIPLD 222
           + V G E+ C V+G+     + +V  IA+    F  ++ +     S NST ++PA +P +
Sbjct: 204 EAVVGSEVGCAVLGNGRELFAGEVDRIALSHGFFRIHQEEQPESGSENSTPIVPADVPAE 263

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSD-FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYA 281
               VQ+ A   ++A+GC+G++R D FL D     V   E+N  PG+T  S +P M A A
Sbjct: 264 TRARVQQTAKAIYRALGCKGLARVDMFLTD--DGTVVLNEVNTLPGLTSYSRYPRMMAAA 321

Query: 282 GYSFRELLLWMV 293
           G     L+  +V
Sbjct: 322 GVPLSALIDRLV 333


>gi|217965050|ref|YP_002350728.1| D-alanine--D-alanine ligase (D-alanylalanine
           synthetase)(D-Ala-D-Ala ligase) [Listeria monocytogenes
           HCC23]
 gi|217334320|gb|ACK40114.1| D-alanine--D-alanine ligase (D-alanylalanine
           synthetase)(D-Ala-D-Ala ligase) [Listeria monocytogenes
           HCC23]
 gi|307570389|emb|CAR83568.1| D-alanine--D-alanine ligase [Listeria monocytogenes L99]
          Length = 370

 Score =  119 bits (298), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 73/259 (28%), Positives = 132/259 (50%), Gaps = 23/259 (8%)

Query: 53  LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
           + F +LHG  GEDG VQ + E+L IPY  +G+LAS+ +MDK+  K++ +  G+P  P++ 
Sbjct: 100 VVFPLLHGPNGEDGTVQGLFEVLNIPYVGNGVLASSAAMDKIVMKKIFADAGIPQVPAVA 159

Query: 113 VN---------RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
           V              + + +++ P  +KP   GSS+GI   K      L    + ++ + 
Sbjct: 160 VRLIDWKNYQAEMITEMEEVLTYPVFVKPANLGSSVGI--SKATNKKELADAMTEAFLYD 217

Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK--------SDFYSYELKYSSLNSTHVL 215
            ++++EQ V   E+  GV+G+   D    +VP         + FY Y+ KY   N+  ++
Sbjct: 218 RRVVVEQGVVAREIEMGVLGN---DTPVCSVPGEILPEGAVATFYDYKAKYQDNNTALII 274

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275
           P ++  +I ++++  A  A   +   G+ R+DF       ++F  E+N  PG TP S++P
Sbjct: 275 PTEVDPEILEQMKEYAVQAFLGLDASGLVRADFFLTE-DNQLFLNEVNTMPGFTPYSMYP 333

Query: 276 EMAAYAGYSFRELLLWMVE 294
            +    G  +  L+  +V+
Sbjct: 334 LLWQETGLPYGALIERLVD 352


>gi|313609857|gb|EFR85282.1| D-alanine--D-alanine ligase [Listeria monocytogenes FSL F2-208]
          Length = 370

 Score =  119 bits (298), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 73/259 (28%), Positives = 132/259 (50%), Gaps = 23/259 (8%)

Query: 53  LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
           + F +LHG  GEDG VQ + E+L IPY  +G+LAS+ +MDK+  K++ +  G+P  P++ 
Sbjct: 100 VVFPLLHGPNGEDGTVQGLFEVLNIPYVGNGVLASSAAMDKIVMKKIFADAGIPQVPAVA 159

Query: 113 VN---------RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
           V              + + +++ P  +KP   GSS+GI   K      L    + ++ + 
Sbjct: 160 VRLIDWKNYQAEMITEMEEVLTYPVFVKPANLGSSVGI--SKATNKKELADAMTEAFLYD 217

Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK--------SDFYSYELKYSSLNSTHVL 215
            ++++EQ V   E+  GV+G+   D    +VP         + FY Y+ KY   N+  ++
Sbjct: 218 RRVVVEQGVVAREIEMGVLGN---DTPVCSVPGEILPEGAVATFYDYKAKYQDNNTALII 274

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275
           P ++  +I ++++  A  A   +   G+ R+DF       ++F  E+N  PG TP S++P
Sbjct: 275 PTEVDPEILEQMKEYAVQAFLGLDASGLVRADFFLTE-DNQLFLNEVNTMPGFTPYSMYP 333

Query: 276 EMAAYAGYSFRELLLWMVE 294
            +    G  +  L+  +V+
Sbjct: 334 LLWQETGLPYGALIERLVD 352


>gi|251782869|ref|YP_002997172.1| D-alanylalanine synthetase [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|242391499|dbj|BAH81958.1| D-alanylalanine synthetase [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|323127673|gb|ADX24970.1| D-alanyl-alanine synthetase A [Streptococcus dysgalactiae subsp.
           equisimilis ATCC 12394]
          Length = 348

 Score =  119 bits (298), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 91/332 (27%), Positives = 166/332 (50%), Gaps = 43/332 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           + +L GG S+EREVS+ S ++   A+    F V    + ++   +               
Sbjct: 6   LVLLYGGRSAEREVSVLSAESVMRAVNYDKFLVKTYFISQTGQFIKTQEFSEKPAATERL 65

Query: 49  -----------LKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
                      +KP        + F VLHG  GEDG +Q  LE+L +PY  + IL+S+++
Sbjct: 66  MTNSTIQYEQQIKPSDIYEEDAVVFPVLHGPMGEDGSIQGFLEVLRMPYVGTNILSSSVA 125

Query: 91  MDKMRSKQVVSSCGVP-VCPSILVNRFTM-----DSQHLISPPYVIKPLKGGSSLGIIVI 144
           MDK+ +K+V+ S G+P V  ++ ++   +     ++   ++ P  +KP   GSS+GI   
Sbjct: 126 MDKITTKRVLESAGIPQVAYTVYIDGQDLEACLTETLATLAFPIFVKPANMGSSVGISKA 185

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYS 201
           +  + +   +  + +++   ++LIEQ V   E+  G++G+  +  T   E+ V   +FY 
Sbjct: 186 QTKEELKEAIQLALTYDS--RVLIEQGVVAREIEVGLLGNTEVKSTLPGEV-VKDVEFYD 242

Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
           Y+ KY     T  +PA+I  D   +++  A  A +A+G  G+SR DF F     +++  E
Sbjct: 243 YKAKYIDNKITMAIPAEIDQDTMTKMRTYAESAFKALGGCGLSRCDF-FLSQDGQIYLNE 301

Query: 262 INVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +N  PG T  S++P +    G ++ +L+  +V
Sbjct: 302 LNTMPGFTQWSMYPLLWENMGLAYSDLIEELV 333


>gi|21283735|ref|NP_646823.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49486876|ref|YP_044097.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|23813964|sp|Q8NVH8|DDL_STAAW RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|56748621|sp|Q6G7M7|DDL_STAAS RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|21205177|dbj|BAB95871.1| D-alanine-D-alanine ligase [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49245319|emb|CAG43794.1| D-alanine--D-alanine ligase [Staphylococcus aureus subsp. aureus
           MSSA476]
          Length = 356

 Score =  119 bits (298), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 90/338 (26%), Positives = 162/338 (47%), Gaps = 48/338 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVS------------------------QI 36
           + ++ GG S+E EVS+ + +   +A++   + V                         ++
Sbjct: 6   ICIVFGGKSAEHEVSILTAQNVLNAIDKDKYHVDIIYITNDGDWRKQNNITAEIISTDEL 65

Query: 37  DVDRSVGLVLAHL-------KP-DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
            ++    L ++ L       +P D  F +LHG  GEDG +Q + E+L++PY  +G+L++A
Sbjct: 66  HLENGEALEISQLLKESSSGQPYDAVFPLLHGPNGEDGTIQGLFEVLDVPYVGNGVLSAA 125

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-QHLI--------SPPYVIKPLKGGSSL 139
            SMDK+  KQ+    G+P  P I   R   +  +H I        + P  +KP   GSS+
Sbjct: 126 SSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYEHNILKLVNDKLNYPVFVKPANLGSSV 185

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPK 196
           GI     +  +   + ++  ++   +L+IEQ V+  E+   V+G+   + T   E+ V  
Sbjct: 186 GISKCNNEAELKEGIKEAFQFDR--KLVIEQGVNAREIEVAVLGNDYPEATWPGEV-VKD 242

Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256
             FY Y+ KY        +PA +  D+   ++ +A  A +A  C G+ R+DF F     +
Sbjct: 243 VAFYDYKSKYKDGKVQLQIPADLDEDVQLTLRNMALEAFKATDCSGLVRADF-FVTEDNQ 301

Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           ++  E N  PG T  S++P++    G S+ EL+  ++E
Sbjct: 302 IYINETNAMPGFTAFSMYPKLWENMGLSYPELITKLIE 339


>gi|326772852|ref|ZP_08232136.1| D-alanine--D-alanine ligase B [Actinomyces viscosus C505]
 gi|326637484|gb|EGE38386.1| D-alanine--D-alanine ligase B [Actinomyces viscosus C505]
          Length = 315

 Score =  119 bits (298), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 92/309 (29%), Positives = 157/309 (50%), Gaps = 20/309 (6%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59
           +AVL GG+S ER++SL SG   A  L+  G  V  +D+D R++G  L    PD+ + ++H
Sbjct: 8   IAVLAGGLSHERDISLRSGHRVAQVLKHLGHTVLVLDIDARTIG-SLKTFGPDVVWPLVH 66

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---- 115
           G  GEDG +Q IL  L +PY  +       +  K  +K  V + GV    S+ + +    
Sbjct: 67  GGPGEDGGLQNILISLGLPYVGTHSDGCQRASFKPTAKASVRTGGVITPDSLTLPQSYFS 126

Query: 116 -------FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168
                   T+ + HL   P V+KP +GGS LG+        +   ++   +++  ++ LI
Sbjct: 127 QLGAQEVLTVVAGHL-GLPVVVKPHQGGSGLGVSYASTADELRSAMVACFAYD--ERALI 183

Query: 169 EQYVDGIELTCGVM--GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE 226
           E+YV G EL   V+  G+    +  + V     Y ++ +Y+   S + +PA++   + ++
Sbjct: 184 ERYVAGTELAVSVVDTGEGPRALPPVEVVTDGQYDFDARYNPGRSEYFVPARLDEAVIEK 243

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           V++ A   H  +G   +SR+D + D      F +++NV PGMT  S+ P +AA A  S  
Sbjct: 244 VKKTAITVHTTLGLGNLSRTDLILDDEGTPWF-IDVNVIPGMTETSLLP-IAAEAEGSLD 301

Query: 287 ELLLWMVED 295
           +L   +V +
Sbjct: 302 DLYDALVRN 310


>gi|289550300|ref|YP_003471204.1| D-alanine--D-alanine ligase [Staphylococcus lugdunensis HKU09-01]
 gi|315660240|ref|ZP_07913095.1| D-alanine-D-alanine ligase [Staphylococcus lugdunensis M23590]
 gi|289179832|gb|ADC87077.1| D-alanine--D-alanine ligase [Staphylococcus lugdunensis HKU09-01]
 gi|315494667|gb|EFU83007.1| D-alanine-D-alanine ligase [Staphylococcus lugdunensis M23590]
          Length = 356

 Score =  119 bits (298), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 76/255 (29%), Positives = 131/255 (51%), Gaps = 16/255 (6%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D  F +LHG  GEDG +Q + E+L+IPY  +G+LA++ SMDK+  KQ+    G+P  P I
Sbjct: 89  DAVFPLLHGPNGEDGTIQGLFEVLDIPYVGNGVLAASSSMDKLVMKQLFEHRGLPQLPYI 148

Query: 112 LVNRFTMDS---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
              R   +          +  +  P  +KP   GSS+GI     +Q +   + ++  ++ 
Sbjct: 149 SFLRSEYEKYQGNIIKLVKDKLEYPVFVKPANLGSSVGISKCNDEQELKAGIAEAFQFDR 208

Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKI 219
             +L+IEQ ++  E+   V+G+   + T   E+ V    FY Y+ KY        +PA++
Sbjct: 209 --KLVIEQGINAREVEVAVLGNDYPETTWPGEV-VKDVAFYDYKSKYKDGKIRLQIPAEL 265

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279
             ++   ++ +A  A +A  C G+ R+DF F     ++F  E N  PG T  S++P +  
Sbjct: 266 DQEVQLTLRNMALEAFKATDCSGLVRADF-FVTEDNQIFINETNAMPGFTAFSMYPSLWE 324

Query: 280 YAGYSFRELLLWMVE 294
             G S+ +L+  ++E
Sbjct: 325 NMGLSYSDLITKLIE 339


>gi|225575667|ref|ZP_03784277.1| hypothetical protein RUMHYD_03760 [Blautia hydrogenotrophica DSM
           10507]
 gi|225037124|gb|EEG47370.1| hypothetical protein RUMHYD_03760 [Blautia hydrogenotrophica DSM
           10507]
          Length = 344

 Score =  119 bits (298), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 97/339 (28%), Positives = 159/339 (46%), Gaps = 49/339 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------------DRSVGLV 45
           + VL GG S+ER+VS+ SG     AL   G +   +DV               D  V   
Sbjct: 3   IVVLAGGTSTERDVSIVSGTGVCKALRQKGHQAILVDVFAGLESVKLEAAFEGDYDVEAA 62

Query: 46  LAHLK---------------------------PDLAFNVLHGNFGEDGLVQAILELLEIP 78
             ++K                            D+ F  LHG  GE+G VQA  +L++I 
Sbjct: 63  AEYIKSFNERIQELEKQRRDFFGPNVVALCKAADIVFLALHGENGENGKVQAAFDLMKIK 122

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFTMDSQHLISPPYVIKPLKG 135
           YT +G   SA++MDK  +K +     VP    + +   NR    S H +  P V+K   G
Sbjct: 123 YTGTGHTGSAMAMDKGITKALFQMYQVPTPKGVTMTVKNRRNDLSVHGMDFPVVVKTCCG 182

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195
           GSS+G+ ++ +DQ   +  L   ++++ ++++IE+Y+ G E T  V+   +  +  I  P
Sbjct: 183 GSSIGVYIV-QDQEAYVKAL-DEAFSYEEEVVIEEYIQGKEYTVAVVDGEAYPIVLIE-P 239

Query: 196 KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255
            S FY Y+ KY +  +    PA +  +  +++Q  A   ++A+  +   R DF+ D  + 
Sbjct: 240 VSGFYDYKNKYQAGATIETCPAPLDEEKTRKMQEYAVRGYKALALQAYGRLDFMMDE-AG 298

Query: 256 KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            ++ LE N  PGMTP S+ P+ AA  G  +  L   ++E
Sbjct: 299 NMYCLEANTLPGMTPTSLIPQEAAALGMDYPTLCEHLIE 337


>gi|225011531|ref|ZP_03701969.1| D-alanine--D-alanine ligase [Flavobacteria bacterium MS024-2A]
 gi|225004034|gb|EEG42006.1| D-alanine--D-alanine ligase [Flavobacteria bacterium MS024-2A]
          Length = 328

 Score =  119 bits (298), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 94/320 (29%), Positives = 156/320 (48%), Gaps = 40/320 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALE--------------------DAG--FKVSQIDV 38
           + V+ GG +SE ++SL SGK     L+                    D G  + VS+ D 
Sbjct: 7   LGVVCGGFTSEFQISLLSGKTVFDNLDRSLWEVFLITINSNEWVANDDNGNHYSVSKGDF 66

Query: 39  DRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQ 98
              +G  +  L  D+ FN +HG  GE+G + A+ ELL IP++      SAL+ +K     
Sbjct: 67  TLQIGNDIVFL--DVIFNSIHGAPGENGQLAALWELLNIPFSSCDSYTSALTYNKRDCLS 124

Query: 99  VVSSCGVPVCPSILVNRF-TMDSQHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154
           V+    +P      ++R   +D + +   +  P  +K  + GSS G+  +KK  ++   L
Sbjct: 125 VLREINIPTAKHFSIDRNDKIDLEKIEKAVGFPCFVKANRAGSSFGVFKVKKKSNLEQAL 184

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGV---MGDAS-LDVTEIAVPKSDFYSYELKYSSLN 210
               ++    Q++IE  ++G E++ GV    GD   L VTEI + +++F+ Y  KY    
Sbjct: 185 --QKAFQEDSQVIIESALEGREVSVGVAKLRGDIKVLPVTEI-ITENEFFDYAAKYEG-K 240

Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF-DPLSRKVFWLEINVQPGMT 269
           S  + PA+IP++  +EV++ +   +  +G +G+ RS+F+F D +      LEIN  PG T
Sbjct: 241 SQEITPAQIPIEWKEEVEKRSKEIYHKLGLKGVVRSEFIFVDGVPH---LLEINTVPGFT 297

Query: 270 PVSIFPEMAAYAGYSFRELL 289
             SI P+ A   G    E  
Sbjct: 298 QKSIIPQQALAMGIELSEFF 317


>gi|47094861|ref|ZP_00232475.1| D-alanine--D-alanine ligase [Listeria monocytogenes str. 1/2a
           F6854]
 gi|254898973|ref|ZP_05258897.1| D-alanyl-alanine synthetase A [Listeria monocytogenes J0161]
 gi|254911539|ref|ZP_05261551.1| D-alanine-D-alanine ligase [Listeria monocytogenes J2818]
 gi|254935865|ref|ZP_05267562.1| D-alanine-D-alanine ligase [Listeria monocytogenes F6900]
 gi|47016743|gb|EAL07662.1| D-alanine--D-alanine ligase [Listeria monocytogenes str. 1/2a
           F6854]
 gi|258608453|gb|EEW21061.1| D-alanine-D-alanine ligase [Listeria monocytogenes F6900]
 gi|293589485|gb|EFF97819.1| D-alanine-D-alanine ligase [Listeria monocytogenes J2818]
          Length = 370

 Score =  119 bits (298), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 73/259 (28%), Positives = 132/259 (50%), Gaps = 23/259 (8%)

Query: 53  LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
           + F +LHG  GEDG VQ + E+L IPY  +G+LAS+ +MDK+  K++ +  G+P  P++ 
Sbjct: 100 VVFPLLHGPNGEDGTVQGLFEVLNIPYVGNGVLASSAAMDKIVMKKIFADAGIPQVPAVA 159

Query: 113 VN---------RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
           V              + + +++ P  +KP   GSS+GI   K      L    + ++ + 
Sbjct: 160 VRLIDWKNYQAEMITEMEEVLTYPVFVKPANLGSSVGI--SKATNKKELADAMTEAFLYD 217

Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK--------SDFYSYELKYSSLNSTHVL 215
            ++++EQ V   E+  GV+G+   D    +VP         + FY Y+ KY   N+  ++
Sbjct: 218 RRVVVEQGVVAREIEMGVLGN---DTPVCSVPGEILPEGAVATFYDYKAKYQDNNTALII 274

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275
           P ++  +I ++++  A  A   +   G+ R+DF       ++F  E+N  PG TP S++P
Sbjct: 275 PTEVDPEILEQMKEYAVQAFLGLDASGLVRADFFLTE-DNQLFLNEVNTMPGFTPYSMYP 333

Query: 276 EMAAYAGYSFRELLLWMVE 294
            +    G  +  L+  +V+
Sbjct: 334 LLWQETGLPYGALIERLVD 352


>gi|160934064|ref|ZP_02081451.1| hypothetical protein CLOLEP_02927 [Clostridium leptum DSM 753]
 gi|156866737|gb|EDO60109.1| hypothetical protein CLOLEP_02927 [Clostridium leptum DSM 753]
          Length = 342

 Score =  119 bits (298), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 79/259 (30%), Positives = 131/259 (50%), Gaps = 18/259 (6%)

Query: 50  KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109
           K D     LHG  GEDG +Q +L+L  IP+    + +SA  MDK+ +  ++   G+P   
Sbjct: 76  KIDCVIPALHGKNGEDGTIQGLLQLAGIPFVGCDMTSSAACMDKVITNVMLEQAGIPQAR 135

Query: 110 SILVNRFTMDS----------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
              +  +   S          + L S P  +KP   GSS+G  V K +    L    + +
Sbjct: 136 FTWLYAYEFQSAPDEAVLKIEKDLGSYPVFVKPANAGSSVG--VSKAENREELRAAIAKA 193

Query: 160 WNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215
                ++LIE+ + G E+ C V+G+     +  V EIA P ++FY YE KY S  S   +
Sbjct: 194 AKEDGKILIEENIVGQEVECAVLGNEDDLLASTVGEIA-PSNEFYDYEAKYLSGTSGLYI 252

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275
           PA +   + + ++  A  A+Q +GC G++R DF F     +V   E+N  PG T +S++P
Sbjct: 253 PAHLESGVIETIRSTAQKAYQVLGCSGLARVDF-FVRNGSEVLLNELNTLPGFTSISMYP 311

Query: 276 EMAAYAGYSFRELLLWMVE 294
           ++  + G S +EL+  +++
Sbjct: 312 KLMEHEGLSNQELIHRLIQ 330


>gi|313638777|gb|EFS03864.1| D-alanine--D-alanine ligase [Listeria seeligeri FSL S4-171]
          Length = 370

 Score =  119 bits (298), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 71/259 (27%), Positives = 133/259 (51%), Gaps = 23/259 (8%)

Query: 53  LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
           + F +LHG  GEDG VQ + E+L IPY  +G+LAS+ +MDK+  K++ +   +P  P++ 
Sbjct: 100 VVFPLLHGPNGEDGTVQGLFEVLNIPYVGNGVLASSAAMDKIVMKKIFADAAIPQVPAVA 159

Query: 113 V---------NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
           V         +    + + ++  P  +KP   GSS+GI      Q +   + ++  ++  
Sbjct: 160 VRLIDWKNFKDEMIAEMEEVLEYPVFVKPANLGSSVGISKATNKQELTEAMTEAFLYDR- 218

Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK--------SDFYSYELKYSSLNSTHVL 215
            ++++EQ V   E+  GV+G+   D    +VP         + FY Y+ KY   N+T ++
Sbjct: 219 -RVVVEQGVVAREIEMGVLGN---DTPICSVPGEILPEGAVAKFYDYKAKYQDNNTTLII 274

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275
           P ++  ++  +++  A  A   +   G+ R+DF       ++F  E+N  PG TP S++P
Sbjct: 275 PTEVEPEVLAQMKEYAIQAFLGLDASGLVRADFFLTD-DNQLFLNEVNTMPGFTPYSMYP 333

Query: 276 EMAAYAGYSFRELLLWMVE 294
            +   +G  +  L+  +V+
Sbjct: 334 LLWQESGLPYPALIERLVD 352


>gi|257426222|ref|ZP_05602637.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257428880|ref|ZP_05605274.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257431489|ref|ZP_05607862.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257434199|ref|ZP_05610549.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257437112|ref|ZP_05613152.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus
           M876]
 gi|282911649|ref|ZP_06319448.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282914929|ref|ZP_06322709.1| D-alanine--D-alanine ligase [Staphylococcus aureus subsp. aureus
           M899]
 gi|282920260|ref|ZP_06327984.1| D-alanine-D-alanine ligase [Staphylococcus aureus subsp. aureus
           C427]
 gi|282925471|ref|ZP_06333125.1| D-alanine-D-alanine ligase [Staphylococcus aureus subsp. aureus
           C101]
 gi|293509001|ref|ZP_06667788.1| D-alanine-D-alanine ligase [Staphylococcus aureus subsp. aureus
           58-424]
 gi|293510913|ref|ZP_06669612.1| D-alanine-D-alanine ligase [Staphylococcus aureus subsp. aureus
           M809]
 gi|293547515|ref|ZP_06672190.1| D-alanine- D-alanine ligase [Staphylococcus aureus subsp. aureus
           M1015]
 gi|257270927|gb|EEV03100.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257274222|gb|EEV05739.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257277730|gb|EEV08400.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257280838|gb|EEV10983.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257283505|gb|EEV13632.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus
           M876]
 gi|282312872|gb|EFB43273.1| D-alanine-D-alanine ligase [Staphylococcus aureus subsp. aureus
           C101]
 gi|282316120|gb|EFB46501.1| D-alanine-D-alanine ligase [Staphylococcus aureus subsp. aureus
           C427]
 gi|282321132|gb|EFB51463.1| D-alanine--D-alanine ligase [Staphylococcus aureus subsp. aureus
           M899]
 gi|282324414|gb|EFB54727.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|290919635|gb|EFD96708.1| D-alanine- D-alanine ligase [Staphylococcus aureus subsp. aureus
           M1015]
 gi|291094705|gb|EFE24977.1| D-alanine-D-alanine ligase [Staphylococcus aureus subsp. aureus
           58-424]
 gi|291466198|gb|EFF08725.1| D-alanine-D-alanine ligase [Staphylococcus aureus subsp. aureus
           M809]
          Length = 356

 Score =  119 bits (298), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 89/300 (29%), Positives = 151/300 (50%), Gaps = 32/300 (10%)

Query: 8   ISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP-DLAFNVLHGNFGEDG 66
           I S  E+ L +G+A          ++SQ+  + S G      +P D  F +LHG  GEDG
Sbjct: 59  IKSTDELHLENGEA---------LEISQLLKESSSG------QPYDAVFPLLHGPNGEDG 103

Query: 67  LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-QHLI- 124
            +Q + E+L++PY  +G+L++A SMDK+  KQ+    G+P  P I   R   +  +H I 
Sbjct: 104 TIQGLFEVLDVPYVGNGVLSAASSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYEHNIL 163

Query: 125 -------SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
                  + P  +KP   GSS+GI     +  +   + ++  ++   +L+IEQ V+  E+
Sbjct: 164 KLVNDKLNYPVFVKPANLGSSIGISKCSNEAELKEGIKEAFQFDR--KLVIEQGVNAREI 221

Query: 178 TCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
              V+G+   + T   E+ V    FY Y+ KY        +PA +  D+   ++ +A  A
Sbjct: 222 EVAVLGNDYPEATWPGEV-VKDVAFYDYKSKYKDGKVQLQIPADLDEDVQLTLRNMALEA 280

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            +A  C G+ R+DF F     +++  E N  PG T  S++P++    G S+ EL+  ++E
Sbjct: 281 FKATDCSGLVRADF-FVTEDNQIYINETNAMPGFTAFSMYPKLWENMGLSYPELITKLIE 339


>gi|257065949|ref|YP_003152205.1| D-alanine/D-alanine ligase [Anaerococcus prevotii DSM 20548]
 gi|256797829|gb|ACV28484.1| D-alanine/D-alanine ligase [Anaerococcus prevotii DSM 20548]
          Length = 345

 Score =  119 bits (298), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 94/338 (27%), Positives = 156/338 (46%), Gaps = 48/338 (14%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVS---------------QIDVDRSVGLV-- 45
           +L GG SSE ++SL S    +  L +  +K+                +ID D    LV  
Sbjct: 6   ILCGGPSSEHDISLRSALNISKNLNEEKYKIKLVYINKEGAYSEAFDKIDTDNEFDLVKE 65

Query: 46  --------LAHL-----KPDLAFNVL----HGNFGEDGLVQAILELLEIPYTHSGILASA 88
                   +A       K D +  ++    HG +GEDG +QA+L+++ I Y  +G+L+SA
Sbjct: 66  VKENKTKSIADFLTCLSKEDYSKTIVIPAVHGTYGEDGTIQALLDVIGIAYIGNGLLSSA 125

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ------HLISPPYVIKPLKGGSSLGI- 141
           + MDK+ S  +     +     +  N+   DS         I  P ++KP   GSS+G+ 
Sbjct: 126 ICMDKVTSNDIFEKNKLSQAKYLYTNKDGFDSDFADRCIEEIGLPLIVKPSANGSSVGVS 185

Query: 142 IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD--F 199
            V  K++ +        +  +  ++L+E+ ++G E+   V+G  + DV+E A   SD  F
Sbjct: 186 KVTNKNELLA---AGDEALKYDKKVLVEELIEGQEIEFAVVGYMNPDVSEPAAYISDHTF 242

Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
             Y+ KY S ++   LP  +  +  +E Q     A++A GC G +R D +F       + 
Sbjct: 243 LDYDAKYFSKSTKETLPYILEKEKLEEAQEFVKRAYEACGCEGFARVD-IFLGKDNNFYV 301

Query: 260 LEINVQPGMTPVSIFPEMAAYA-GYSFRELLLWMVEDA 296
            EIN  PG TP S F  +       SF E+L  +++D 
Sbjct: 302 NEINTFPGFTPSSFFARLCELMYNESFSEVLDRLIKDG 339


>gi|258422916|ref|ZP_05685816.1| D-alanyl-alanine synthetase A [Staphylococcus aureus A9635]
 gi|257846940|gb|EEV70954.1| D-alanyl-alanine synthetase A [Staphylococcus aureus A9635]
          Length = 356

 Score =  119 bits (297), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 90/338 (26%), Positives = 162/338 (47%), Gaps = 48/338 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVS------------------------QI 36
           + ++ GG S+E EVS+ + +   +A++   + V                         ++
Sbjct: 6   ICIVFGGKSAEHEVSILTAQNVLNAIDKDKYHVDIIYITNDGDWRKQNNITTEIKSTDEL 65

Query: 37  DVDRSVGLVLAHL-------KP-DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
            ++    L ++ L       +P D  F +LHG  GEDG +Q + E+L++PY  +G+L++A
Sbjct: 66  HLENGEALEISQLLKEGSSGQPYDAVFPLLHGPNGEDGTIQGLFEVLDVPYVGNGVLSAA 125

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-QHLI--------SPPYVIKPLKGGSSL 139
            SMDK+  KQ+    G+P  P I   R   +  +H I        + P  +KP   GSS+
Sbjct: 126 SSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYEHNILKLVNDKLNYPVFVKPANLGSSV 185

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPK 196
           GI     +  +   + ++  ++   +L+IEQ V+  E+   V+G+   + T   E+ V  
Sbjct: 186 GISKCNNEAELKEGIKEAFQFDR--KLVIEQGVNAREIEVAVLGNDYPEATWPGEV-VKD 242

Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256
             FY Y+ KY        +PA +  D+   ++ +A  A +A  C G+ R+DF F     +
Sbjct: 243 VAFYDYKSKYKDGKVQLQIPADLDEDVQLTLRNMALEAFKATDCSGLVRADF-FVTEDNQ 301

Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           ++  E N  PG T  S++P++    G S+ EL+  ++E
Sbjct: 302 IYINETNAMPGFTAFSMYPKLWENMGLSYPELITKLIE 339


>gi|325289080|ref|YP_004265261.1| D-alanine--D-alanine ligase [Syntrophobotulus glycolicus DSM 8271]
 gi|324964481|gb|ADY55260.1| D-alanine--D-alanine ligase [Syntrophobotulus glycolicus DSM 8271]
          Length = 339

 Score =  119 bits (297), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 97/335 (28%), Positives = 156/335 (46%), Gaps = 57/335 (17%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP----------- 51
           VL GG+S ER+VSLSSG   ++AL + G  V  +D+   +G+   H++P           
Sbjct: 5   VLAGGLSPERDVSLSSGALISNALIEKGHDVMLLDL--YLGINNKHIEPAYINLKSNKTF 62

Query: 52  ------------------------------------DLAFNVLHGNFGEDGLVQAILELL 75
                                               D+ F  LHG+ GE+G +QA+L++ 
Sbjct: 63  SYLVPPEEPDLDAIKASVNNRGSLIGDGIIDLCKEADVVFLALHGSIGENGKLQAVLDIN 122

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKG 135
            I YT +G + S L+MDK  SK+++ S  +       V+  T      I+ P V+KP   
Sbjct: 123 GIKYTGTGYVGSLLAMDKDLSKKLILSNNILTPHWKYVDLQTDTDFDDINYPCVVKPCSC 182

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSW--NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
           GSS+G+ +++     P +L  +  +   + + ++IE+ + G E + G++   +L V EI 
Sbjct: 183 GSSVGVTMVET----PSELNSAIEFAKKYENSVIIEEKIVGREFSVGILNGEALPVIEIK 238

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
            P   FY Y+ KY    +  + PA I  +I   +Q  A   H  +     SR DF+ D  
Sbjct: 239 -PLIGFYDYKNKYQKGLTGEICPANISNEIRYLLQNSAVKVHNLLRLGFYSRIDFILDQ- 296

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           S   + LE N  PGMTP S+ P+ A     ++ +L
Sbjct: 297 SNNAYCLEANTLPGMTPTSLLPQEALANDITYSDL 331


>gi|297559174|ref|YP_003678148.1| D-alanine/D-alanine ligase [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
 gi|296843622|gb|ADH65642.1| D-alanine/D-alanine ligase [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
          Length = 374

 Score =  119 bits (297), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 74/261 (28%), Positives = 131/261 (50%), Gaps = 18/261 (6%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+   +LHG FGEDG +Q + E++ + Y  +G+ +S+ SMDK+  K ++   G+P    +
Sbjct: 108 DVVLPLLHGPFGEDGTIQGLFEMMGVRYAGAGVFSSSASMDKVFMKAMLRGNGIPTSDFV 167

Query: 112 LVN--------RFTMDSQHLISPPYVIKPLKGGSSLGIIVIK-KDQSIPLDLLQSSSWNH 162
            +         +  +D    +     +KP + GSS+GI  ++    +  +     ++  H
Sbjct: 168 AITDRQWRTERKRVLDDVAELGATVFVKPARAGSSVGISKVEDSSDADAVVAAVEAAREH 227

Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKS-------DFYSYELKYSSLNSTHVL 215
             ++L+E  V G E+ CGV+        ++++P         DFY +E KY S  S+  +
Sbjct: 228 DPKVLVEAQVVGREVECGVLESEDGGTPDVSLPAEVHVADGFDFYDFEAKYLS-TSSLTI 286

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275
           PA++P +    ++ LA    +A+GC G++R DF +      +   E+N  PG TP S FP
Sbjct: 287 PAELPEEATARLRALAAEVFEAMGCEGLARVDFFYTE-DGDILVNELNTMPGFTPASAFP 345

Query: 276 EMAAYAGYSFRELLLWMVEDA 296
           +M A  G  +  L+  M+  A
Sbjct: 346 QMWAATGVDYAALVERMISTA 366


>gi|315302237|ref|ZP_07873149.1| D-alanine--D-alanine ligase [Listeria ivanovii FSL F6-596]
 gi|313629387|gb|EFR97608.1| D-alanine--D-alanine ligase [Listeria ivanovii FSL F6-596]
          Length = 370

 Score =  119 bits (297), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 89/352 (25%), Positives = 162/352 (46%), Gaps = 66/352 (18%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQI-------------------------- 36
           +L GG S+E EVSL +  +  +AL+   F+   I                          
Sbjct: 7   LLYGGKSAEHEVSLQTAFSVINALDLNKFEAQPIYITNEGEWIQGPLLSGKLDFVEQLRF 66

Query: 37  -----------DVDRSVGLVL--AHLKPD----LAFNVLHGNFGEDGLVQAILELLEIPY 79
                      + ++S G ++  A L+ D    + F +LHG  GEDG VQ + E+L IPY
Sbjct: 67  AAADKVELALVETEKSAGELISPAVLEADGQETVVFPLLHGPNGEDGTVQGLFEVLNIPY 126

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILV---------NRFTMDSQHLISPPYVI 130
             +G+LAS+ +MDK+  K++ +   +P  P++ V         +    + + ++  P  +
Sbjct: 127 VGNGVLASSAAMDKIVMKKIFADAAIPQVPAVAVRLIDWKNFQDEMVTEMEEVLEYPVFV 186

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190
           KP   GSS+GI      Q +   + ++  ++   ++++EQ V   E+  GV+G+   D  
Sbjct: 187 KPANLGSSVGISKATNKQELTEAMTEAFLYDR--RVVVEQGVIAREIEMGVLGN---DTP 241

Query: 191 EIAVPK--------SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
             +VP         + FY Y+ KY   N+  ++P ++  +I  +++  A  A   +   G
Sbjct: 242 ICSVPGEILPEGAVAKFYDYKAKYQDNNTALIIPTEVEPEILAQMKEYAIQAFLGLDASG 301

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           + R+DF       ++F  E+N  PG TP S++P +    G  +  L+  +V+
Sbjct: 302 LVRADFFLTD-DNQLFLNEVNTMPGFTPYSMYPLLWQETGLPYPALIERLVD 352


>gi|297210098|ref|ZP_06926491.1| D-alanine--D-alanine ligase [Staphylococcus aureus subsp. aureus
           ATCC 51811]
 gi|300910460|ref|ZP_07127912.1| D-alanine--D-alanine ligase [Staphylococcus aureus subsp. aureus
           TCH70]
 gi|296885298|gb|EFH24238.1| D-alanine--D-alanine ligase [Staphylococcus aureus subsp. aureus
           ATCC 51811]
 gi|300888302|gb|EFK83493.1| D-alanine--D-alanine ligase [Staphylococcus aureus subsp. aureus
           TCH70]
          Length = 393

 Score =  119 bits (297), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 90/338 (26%), Positives = 162/338 (47%), Gaps = 48/338 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVS------------------------QI 36
           + ++ GG S+E EVS+ + +   +A++   + V                         ++
Sbjct: 43  ICIVFGGKSAEHEVSILTAQNVLNAIDKDKYHVDIIYITNDGDWRKQNNITAEIISTDEL 102

Query: 37  DVDRSVGLVLAHL-------KP-DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
            ++    L ++ L       +P D  F +LHG  GEDG +Q + E+L++PY  +G+L++A
Sbjct: 103 HLENGEALEISQLLKESSSGQPYDAVFPLLHGPNGEDGTIQGLFEVLDVPYVGNGVLSAA 162

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-QHLI--------SPPYVIKPLKGGSSL 139
            SMDK+  KQ+    G+P  P I   R   +  +H I        + P  +KP   GSS+
Sbjct: 163 SSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYEHNILKLVNDKLNYPVFVKPANLGSSV 222

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPK 196
           GI     +  +   + ++  ++   +L+IEQ V+  E+   V+G+   + T   E+ V  
Sbjct: 223 GISKCNNEAELKEGIKEAFQFDR--KLVIEQGVNAREIEVAVLGNDYPEATWPGEV-VKD 279

Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256
             FY Y+ KY        +PA +  D+   ++ +A  A +A  C G+ R+DF F     +
Sbjct: 280 VAFYDYKSKYKDGKVQLQIPADLDEDVQLTLRNMALEAFKATDCSGLVRADF-FVTEDNQ 338

Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           ++  E N  PG T  S++P++    G S+ EL+  ++E
Sbjct: 339 IYINETNAMPGFTAFSMYPKLWENMGLSYPELITKLIE 376


>gi|8100679|gb|AAF72363.1|AF192329_24 VanB [Enterococcus faecalis]
          Length = 342

 Score =  119 bits (297), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 78/245 (31%), Positives = 124/245 (50%), Gaps = 10/245 (4%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+AF VLHG  GEDG +Q + EL  IPY    I +SA  MDK  +  +  + G+ V    
Sbjct: 91  DVAFPVLHGKCGEDGAIQGLFELSGIPYVGCDIQSSAACMDKSLAYILTKNAGIAVPEFQ 150

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
           ++++        ++ P  +KP + GSS G  V K + +  L+    ++  +  ++LIEQ 
Sbjct: 151 MIDKGDKPEAGALTYPVFVKPARSGSSFG--VTKVNGTEELNAAIEAAGQYDGKILIEQA 208

Query: 172 VDGIELTCGVMGDAS----LDVTEIAVPKSDFYSY---ELKYSSLNSTHVLPAKIPLDIY 224
           + G E+ C VMG+       +V +I +    F  +   E +  S N+   +PA IP++  
Sbjct: 209 ISGCEVGCAVMGNEDDLIVGEVDQIRLSHGIFRIHQENEPEKGSENAMITVPADIPVEER 268

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
             VQ  A   ++ +GCRG++R D LF      +   E+N  PG T  S +P M A AG +
Sbjct: 269 NRVQETAKKVYRVLGCRGLARVD-LFLQEDGGIVLNEVNTLPGFTSYSRYPRMVAAAGIT 327

Query: 285 FRELL 289
              L+
Sbjct: 328 LPALI 332


>gi|313886885|ref|ZP_07820589.1| D-ala D-ala ligase N-terminal domain protein [Porphyromonas
           asaccharolytica PR426713P-I]
 gi|312923682|gb|EFR34487.1| D-ala D-ala ligase N-terminal domain protein [Porphyromonas
           asaccharolytica PR426713P-I]
          Length = 329

 Score =  119 bits (297), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 94/325 (28%), Positives = 147/325 (45%), Gaps = 36/325 (11%)

Query: 1   MAVLMGGISSEREVSLSSGKAC-------------------ASALEDAGFKVSQIDVDRS 41
           +A++ GG S E EVS  S +                     A ++ DA  K   ID    
Sbjct: 6   IAIICGGYSGEAEVSQRSAQTILKQIDQTLFTPYLVTITRDAWSVTDAEGKAGTIDHALV 65

Query: 42  VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
                A +   LA+  +HG  GE+GL+Q  L++L IPYT  G+L  AL+ +K      ++
Sbjct: 66  SRFGTAEVTFALAYITIHGTPGENGLLQGYLDMLGIPYTTGGVLCEALTFNKEACNAYLA 125

Query: 102 SCGVPV----CPSILVNRFTMDSQHLISP----PYVIKPLKGGSSLGIIVIKKDQSIPLD 153
             G+ +    C       F+ + Q LI      P  +KP  GGSS+    I  DQ   L 
Sbjct: 126 HHGLRIARSHCLRNHTREFSSEEQELIQSRLRLPLFVKPNTGGSSIATTRI--DQWEQLS 183

Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCG--VMGDAS--LDVTEIAVPKSDFYSYELKYSSL 209
              + ++     +LIE+ + G E+TCG  ++ D S  L VTE+ V    F+ Y+ KY   
Sbjct: 184 TAVADAYTAAPDVLIEECIVGTEVTCGCVILPDDSFALPVTEV-VAHDTFFDYDAKYYG- 241

Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
            S  + PA+I  ++ + VQ  +      + C G  R D++ +        LE+N  PGMT
Sbjct: 242 KSDEITPARISPELTQRVQETSLTIAHLLDCYGFVRIDYIIEADGIPTL-LEVNTTPGMT 300

Query: 270 PVSIFPEMAAYAGYSFRELLLWMVE 294
             S  P+    AG    +L+  +++
Sbjct: 301 EASFIPQQVRAAGLQLSDLITRIIK 325


>gi|253752073|ref|YP_003025214.1| D-alanine--D-alanine ligase [Streptococcus suis SC84]
 gi|253753898|ref|YP_003027039.1| D-alanine--D-alanine ligase [Streptococcus suis P1/7]
 gi|253755227|ref|YP_003028367.1| D-alanine--D-alanine ligase [Streptococcus suis BM407]
 gi|251816362|emb|CAZ51993.1| D-alanine--D-alanine ligase [Streptococcus suis SC84]
 gi|251817691|emb|CAZ55439.1| D-alanine--D-alanine ligase [Streptococcus suis BM407]
 gi|251820144|emb|CAR46476.1| D-alanine--D-alanine ligase [Streptococcus suis P1/7]
 gi|319758439|gb|ADV70381.1| D-alanine--D-alanine ligase [Streptococcus suis JS14]
          Length = 348

 Score =  119 bits (297), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 94/332 (28%), Positives = 159/332 (47%), Gaps = 43/332 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           + +L GG S+EREVS+ S ++   A+    F V    + ++   +               
Sbjct: 6   LILLYGGRSAEREVSVLSAESVMRAINYDKFFVKTYFISQTGDFIKTQEFSQTPSADEKL 65

Query: 49  -----------LKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
                      ++P        + F VLHG  GEDG +Q  LE+L +PY  + IL+S+++
Sbjct: 66  MTNATIVEEQKIRPSDIYEEKAVVFPVLHGPMGEDGSIQGFLEVLRMPYVGTNILSSSVA 125

Query: 91  MDKMRSKQVVSSCGVPVCPSILV------NRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
           MDK+ +K+V+ S G+   P + V      +    + +  ++ P  +KP   GSS+GI   
Sbjct: 126 MDKITTKRVLESAGISQVPYVAVIEGENIDDKIAEIEGKLTYPVFVKPANMGSSVGI--S 183

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYS 201
           K +    L      ++ +  ++L+EQ V+  E+  G++G+A +  T   E+ V    FY 
Sbjct: 184 KAEDLAGLRKALDLAFKYDSRVLVEQGVNAREIEVGLLGNADVKTTLPGEV-VKDVAFYD 242

Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
           Y+ KY     T  +PAKI   I   ++  A  A +AIG  G+SR DF        +F  E
Sbjct: 243 YDAKYIDNKITMEIPAKIDESIMDIMRDNAAKAFRAIGGCGLSRCDFFLTE-DGDIFLNE 301

Query: 262 INVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +N  PG T  S++P +    G ++ +L+  +V
Sbjct: 302 LNTMPGFTQWSMYPLLWDNMGLAYPDLIEELV 333


>gi|253316242|ref|ZP_04839455.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus
           str. CF-Marseille]
          Length = 356

 Score =  119 bits (297), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 92/338 (27%), Positives = 160/338 (47%), Gaps = 48/338 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI----DVD-RSVGLVLAHLKP---- 51
           + ++ GG S+E EVS+ + +   +A++   + V  I    D D R    + A +K     
Sbjct: 6   ICIVFGGKSAEHEVSILTAQNVLNAIDKDKYHVDIIYITNDGDWRKQNNITAEIKSTDEL 65

Query: 52  -----------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
                                  +  F +LHG  GEDG +Q + E+L++PY  +G+L++A
Sbjct: 66  HLENGEALEISQLLKESSSGQPYNAVFPLLHGPNGEDGTIQGLFEVLDVPYVGNGVLSAA 125

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-QHLI--------SPPYVIKPLKGGSSL 139
            SMDK+  KQ+    G+P  P I   R   +  +H I        + P  +KP   GSS+
Sbjct: 126 SSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYEHNILKLVNDKLNYPVFVKPANLGSSV 185

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPK 196
           GI     +  +   + ++  ++   +L+IEQ V+  E+   V+G+   + T   E+ V  
Sbjct: 186 GISKCNNEAELKEGIKEAFQFDR--KLVIEQGVNAREIEVAVLGNDYPEATWPGEV-VKD 242

Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256
             FY Y+ KY        +PA +  D+   ++ +A  A +A  C G+ R+DF F     +
Sbjct: 243 VAFYDYKSKYKDGKVQLQIPADLDEDVQLTLRNMALEAFKATDCSGLVRADF-FVTEDNQ 301

Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           ++  E N  PG T  S++P++    G S+ EL+  ++E
Sbjct: 302 IYINETNAMPGFTAFSMYPKLWENMGLSYPELITKLIE 339


>gi|312437503|gb|ADQ76574.1| D-alanine-D-alanine ligase [Staphylococcus aureus subsp. aureus
           TCH60]
          Length = 393

 Score =  119 bits (297), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 89/300 (29%), Positives = 151/300 (50%), Gaps = 32/300 (10%)

Query: 8   ISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP-DLAFNVLHGNFGEDG 66
           I S  E+ L +G+A          ++SQ+  + S G      +P D  F +LHG  GEDG
Sbjct: 96  IKSTDELHLENGEA---------LEISQLLKESSSG------QPYDAVFPLLHGPNGEDG 140

Query: 67  LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-QHLI- 124
            +Q + E+L++PY  +G+L++A SMDK+  KQ+    G+P  P I   R   +  +H I 
Sbjct: 141 TIQGLFEVLDVPYVGNGVLSAASSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYEHNIL 200

Query: 125 -------SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
                  + P  +KP   GSS+GI     +  +   + ++  ++   +L+IEQ V+  E+
Sbjct: 201 KLVNDKLNYPVFVKPANLGSSIGISKCSNEAELKEGIKEAFQFDR--KLVIEQGVNAREI 258

Query: 178 TCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
              V+G+   + T   E+ V    FY Y+ KY        +PA +  D+   ++ +A  A
Sbjct: 259 EVAVLGNDYPEATWPGEV-VKDVAFYDYKSKYKDGKVQLQIPADLDEDVQLTLRNMALEA 317

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            +A  C G+ R+DF F     +++  E N  PG T  S++P++    G S+ EL+  ++E
Sbjct: 318 FKATDCSGLVRADF-FVTEDNQIYINETNAMPGFTAFSMYPKLWENMGLSYPELITKLIE 376


>gi|227496614|ref|ZP_03926892.1| possible D-alanine--D-alanine ligase [Actinomyces urogenitalis DSM
           15434]
 gi|226833894|gb|EEH66277.1| possible D-alanine--D-alanine ligase [Actinomyces urogenitalis DSM
           15434]
          Length = 320

 Score =  118 bits (296), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 86/294 (29%), Positives = 143/294 (48%), Gaps = 15/294 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +A+L GG+S ER+VSL SG   A  L+  G  V  +DVD      L    PD+ + ++HG
Sbjct: 14  IAILAGGLSHERDVSLRSGNRVAQVLKHLGHTVLVLDVDARTIASLRAFGPDVVWPLVHG 73

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF---T 117
             GEDG +Q IL  L++PY  +       +  K  +K  V + GV    S+ + +     
Sbjct: 74  GPGEDGGLQNILLALDLPYVGTHSDGCQRASFKPTAKAGVRAAGVKTPDSLTLPKAYFSQ 133

Query: 118 MDSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           + +Q ++         P V+KP +GGS LG+        +   ++   +++  ++ LIE 
Sbjct: 134 LGAQEVLGTVMSRLGLPVVVKPQQGGSGLGVSPASDADQLRNAMVACFAYD--ERALIEA 191

Query: 171 YVDGIELTCGVM--GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           YV G E+   V+  G+    +  + V     Y ++ +Y+   S +  PA++  +    VQ
Sbjct: 192 YVAGREIAVSVVDAGEGPQALPPVEVVTEGQYDFDARYNPGRSEYFAPARLSAEETALVQ 251

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAG 282
             A   H+ +G   +SR+D + D      F +++NV PGMT  S+ P  A  AG
Sbjct: 252 ETALSVHRTLGLGNVSRTDLILDEQGTPWF-IDVNVVPGMTETSLLPLAAEAAG 304


>gi|320532833|ref|ZP_08033608.1| D-ala D-ala ligase [Actinomyces sp. oral taxon 171 str. F0337]
 gi|320134948|gb|EFW27121.1| D-ala D-ala ligase [Actinomyces sp. oral taxon 171 str. F0337]
          Length = 315

 Score =  118 bits (296), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 93/309 (30%), Positives = 158/309 (51%), Gaps = 20/309 (6%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59
           +AVL GG+S ER++SL SG   A  L+  G  V  +D+D R++G  L    PD+ + ++H
Sbjct: 8   IAVLAGGLSHERDISLRSGHRVAQVLKHLGHTVLVLDIDARTIG-SLRTFGPDVVWPLVH 66

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRF 116
           G  GEDG +Q +L  L +PY  +       +  K  +K  V + GV + P  L    + F
Sbjct: 67  GGPGEDGGLQNVLIALGLPYVGTHSDGCQRASFKPTAKASVRTGGV-ITPDSLTLPQSYF 125

Query: 117 T-MDSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168
           + M +Q +++        P V+KP +GGS LG+        +   ++   +++  ++ LI
Sbjct: 126 SQMGAQEVLTVVAGHLGLPVVVKPHQGGSGLGVSYASTADELRSAMVACFAYD--ERALI 183

Query: 169 EQYVDGIELTCGVM--GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE 226
           E+YV G EL   V+  G+    +  + V     Y ++ +Y+   S + +PA++   + + 
Sbjct: 184 ERYVPGTELAVSVVDTGEGPHALPPVEVVTDGQYDFDARYNPGRSEYFVPARLDDAVIET 243

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           V+  A   H  +G   +SR+D + D      F +++NV PGMT  S+ P +AA A  S  
Sbjct: 244 VKATAVTVHTTLGLGNLSRTDLILDDEGTPWF-IDVNVIPGMTETSLLP-IAAEAEGSLE 301

Query: 287 ELLLWMVED 295
           EL   +V +
Sbjct: 302 ELYDALVRN 310


>gi|228472127|ref|ZP_04056893.1| D-ala D-ala ligase [Capnocytophaga gingivalis ATCC 33624]
 gi|228276330|gb|EEK15054.1| D-ala D-ala ligase [Capnocytophaga gingivalis ATCC 33624]
          Length = 325

 Score =  118 bits (296), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 93/324 (28%), Positives = 156/324 (48%), Gaps = 34/324 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40
           +A+LMGG S E  VSL S    A  L+ + +   +I +                    D 
Sbjct: 4   IAILMGGFSQEAAVSLQSAATVAEYLDKSKYTAYRILITKEKWVYTDTLGQEILVDKNDF 63

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           S+ L    +  D AFN +HG  GEDG +QA   L+ +P T   + ASAL+ +K     V+
Sbjct: 64  SLTLEGKKITFDCAFNAIHGTPGEDGNLQAYFALVGVPITGCSMYASALTFNKRDMLSVL 123

Query: 101 SSCGVPVCPSILVNR----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
              G+P   +  +N+     T +    +  P  +K  + GSS+G+     ++ I  D   
Sbjct: 124 KPYGIPRAKAYYLNQGEPFSTREIIKTVGLPCFVKANRSGSSIGVFKAYDEKDI--DQAI 181

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNST 212
             ++    +++IE+++ G E++ GV+        L +TEI V ++DF+ YE KY    S 
Sbjct: 182 EKAFEVDTEVIIEEFLKGTEVSVGVITYHGKKRVLPITEI-VSENDFFDYEAKYQG-KSK 239

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
            + PA++  +  K+V+ +A   +  +  +G SRS+++   +      LE+N  PG+T  S
Sbjct: 240 EITPARLSEEERKKVEEVALRVYNLLQMKGFSRSEYIL--VGGVPHLLEMNTTPGLTKNS 297

Query: 273 IFPEMAAYAGYSFRELLLWMVEDA 296
           I P+ A  AG S   L    +E+A
Sbjct: 298 ILPQQAKAAGISLTNLFDNAIEEA 321


>gi|282909396|ref|ZP_06317211.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|283958862|ref|ZP_06376307.1| D-alanine--D-alanine ligase [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|282326666|gb|EFB56964.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|283789580|gb|EFC28403.1| D-alanine--D-alanine ligase [Staphylococcus aureus subsp. aureus
           A017934/97]
          Length = 356

 Score =  118 bits (296), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 89/300 (29%), Positives = 151/300 (50%), Gaps = 32/300 (10%)

Query: 8   ISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP-DLAFNVLHGNFGEDG 66
           I S  E+ L +G+A          ++SQ+  + S G      +P D  F +LHG  GEDG
Sbjct: 59  IKSTDELHLENGEA---------LEISQLLKESSSG------QPYDAVFPLLHGPNGEDG 103

Query: 67  LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-QHLI- 124
            +Q + E+L++PY  +G+L++A SMDK+  KQ+    G+P  P I   R   +  +H I 
Sbjct: 104 TIQGLFEVLDVPYVGNGVLSAASSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYEHNIL 163

Query: 125 -------SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
                  + P  +KP   GSS+GI     +  +   + ++  ++   +L+IEQ V+  E+
Sbjct: 164 KLVNDKLNYPVFVKPANLGSSIGISKCSNEVELKEGIKEAFQFDR--KLVIEQGVNAREI 221

Query: 178 TCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
              V+G+   + T   E+ V    FY Y+ KY        +PA +  D+   ++ +A  A
Sbjct: 222 EVAVLGNDYPEATWPGEV-VKDVAFYDYKSKYKDGKVQLQIPADLDEDVQLTLRNMALEA 280

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            +A  C G+ R+DF F     +++  E N  PG T  S++P++    G S+ EL+  ++E
Sbjct: 281 FKATDCSGLVRADF-FVTEDNQIYINETNAMPGFTAFSMYPKLWENMGLSYPELITKLIE 339


>gi|308387880|pdb|3N8D|A Chain A, Crystal Structure Of Staphylococcus Aureus Vrsa-9
           D-Ala:d-Ala Ligase
 gi|308387881|pdb|3N8D|B Chain B, Crystal Structure Of Staphylococcus Aureus Vrsa-9
           D-Ala:d-Ala Ligase
          Length = 364

 Score =  118 bits (296), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 92/338 (27%), Positives = 159/338 (47%), Gaps = 48/338 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI----DVD-RSVGLVLAHLKP---- 51
           + ++ GG S+E EVS+ + +   +A++   + V  I    D D R    + A +K     
Sbjct: 6   ICIVFGGKSAEHEVSILTAQNVLNAIDKDKYHVDIIYITNDGDWRKQNNITAEIKSTDEL 65

Query: 52  -----------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
                                  D  F +LHG  GEDG +Q + E+L++PY  +G+L++A
Sbjct: 66  HLENGEALEISQLLKESSSGQPYDAVFPLLHGPNGEDGTIQGLFEVLDVPYVGNGVLSAA 125

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-QHLI--------SPPYVIKPLKGGSSL 139
            SMDK+  KQ+    G+P  P I   R   +  +H I        + P  +KP   GSS+
Sbjct: 126 SSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYEHNILKLVNDKLNYPVFVKPANLGSSV 185

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPK 196
           GI     +  +   + ++  ++   +L+IEQ V+  E+   V+G+   + T   E+ V  
Sbjct: 186 GISKCNNEAELKEGIKEAFQFDR--KLVIEQGVNAREIEVAVLGNDYPEATWPGEV-VKD 242

Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256
             FY Y+ KY        +PA +  D+   ++ +A  A +   C G+ R+DF F     +
Sbjct: 243 VAFYDYKSKYKDGKVQLKIPADLDEDVQLTLRNMALEAFKETDCSGLVRADF-FVTEDNQ 301

Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           ++  E N  PG T  S++P++    G S+ EL+  ++E
Sbjct: 302 IYINETNAMPGFTAFSMYPKLWENMGLSYPELITKLIE 339


>gi|289434122|ref|YP_003463994.1| D-alanine-D-alanine ligase [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
 gi|289170366|emb|CBH26906.1| D-alanine-D-alanine ligase [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
          Length = 370

 Score =  118 bits (296), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 71/259 (27%), Positives = 133/259 (51%), Gaps = 23/259 (8%)

Query: 53  LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
           + F +LHG  GEDG VQ + E+L IPY  +G+LAS+ +MDK+  K++ +   +P  P++ 
Sbjct: 100 VVFPLLHGPNGEDGTVQGLFEVLNIPYVGNGVLASSAAMDKIVMKKIFADAAIPQVPAVA 159

Query: 113 V---------NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
           V         +    + + ++  P  +KP   GSS+GI      Q +   + ++  ++  
Sbjct: 160 VRLIDWKNFKDEMIAEMEEVLEYPVFVKPANLGSSVGISKATNKQELTEAMTEAFLYDR- 218

Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK--------SDFYSYELKYSSLNSTHVL 215
            ++++EQ V   E+  GV+G+   D    +VP         + FY Y+ KY   N+T ++
Sbjct: 219 -RVVVEQGVVAREIEMGVLGN---DTPICSVPGEILPEGAVAKFYDYKAKYQDNNTTLII 274

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275
           P ++  ++  +++  A  A   +   G+ R+DF       ++F  E+N  PG TP S++P
Sbjct: 275 PTEVEPEVLAQMKDYAIQAFLGLDASGLVRADFFLTD-DNQLFLNEVNTMPGFTPYSMYP 333

Query: 276 EMAAYAGYSFRELLLWMVE 294
            +   +G  +  L+  +V+
Sbjct: 334 LLWQESGLPYPALIERLVD 352


>gi|116073344|ref|ZP_01470606.1| D-alanine--D-alanine ligase [Synechococcus sp. RS9916]
 gi|116068649|gb|EAU74401.1| D-alanine--D-alanine ligase [Synechococcus sp. RS9916]
          Length = 353

 Score =  118 bits (296), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 93/346 (26%), Positives = 161/346 (46%), Gaps = 52/346 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAG----FKVSQIDVD--------RSVGLVLAH 48
           + ++ GG S E  VS+ S     +ALE       F VS   +D             VLA 
Sbjct: 8   IGLVFGGASGEHAVSIRSANTVIAALEQGQNRERFSVSAFYIDCQGRWWAEEVARAVLAS 67

Query: 49  LKP-------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
            +P                         ++ + VLHG  GEDG VQ +  L+  P+  +G
Sbjct: 68  GQPAAPEDLPQPLPSPGFLNLPAGADAVEVWYPVLHGPNGEDGTVQGLFTLMGKPFVGAG 127

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-----------QHLISPPYVIKP 132
           +L S+++MDK+  K   ++ G+   P + +N   +             +  +  P  +KP
Sbjct: 128 VLGSSVAMDKLAMKAAFAAAGLAQVPYVGLNAADLQEPERRDAVVARIEQELGYPCFVKP 187

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192
              GSS+GI   +    +   L +++S +   ++++EQ VD  EL C V+G   L  + +
Sbjct: 188 ANLGSSVGITKARDRSQLLSGLDEAASLDP--RIVVEQGVDARELECAVLGKRQLKASVV 245

Query: 193 AVPK--SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
              +  +D+Y Y  KYS   ST ++PA IP  +  +V+ +A  + +A+   G++R DF +
Sbjct: 246 GEIRFDADWYDYTTKYSDGLSTTLIPAPIPESLQDQVRTMALASCRALCVEGMARVDFFY 305

Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           D  +  ++  EIN  PG T +S++P +   +G    +L+  +VE A
Sbjct: 306 DDRTGDLWINEINTLPGFTSLSMYPMLWNASGIGLEQLVAQLVESA 351


>gi|229463107|gb|ACQ66105.1| D-alanine:D-lactate ligase [Enterococcus faecium]
          Length = 342

 Score =  118 bits (296), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 78/245 (31%), Positives = 124/245 (50%), Gaps = 10/245 (4%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+AF VLHG  GEDG +Q + EL  IPY    I +SA  MDK  +  +  + G+ V    
Sbjct: 91  DVAFPVLHGKCGEDGAIQGLFELSGIPYVGCDIQSSAACMDKSLAYILTKNAGIAVPEFQ 150

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
           ++++        ++ P  +KP + GSS G  V K + +  L+    ++  +  ++LIEQ 
Sbjct: 151 MIDKGDKPEAGALTYPVFVKPARSGSSFG--VTKVNGTEELNAAIEAAGQYDGKILIEQA 208

Query: 172 VDGIELTCGVMGDAS----LDVTEIAVPKSDFYSY---ELKYSSLNSTHVLPAKIPLDIY 224
           + G E+ C VMG+       +V +I +    F  +   E +  S N+   +PA IP++  
Sbjct: 209 ISGCEVGCAVMGNEDDLIVGEVDQIRLSHGIFRIHQENEPEKGSENAMITVPADIPVEER 268

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
             VQ  A   ++ +GCRG++R D LF      +   E+N  PG T  S +P M A AG +
Sbjct: 269 NRVQETAKKVYRVLGCRGLARVD-LFLQEDGGIVLNEVNTLPGFTSYSRYPRMMAAAGIT 327

Query: 285 FRELL 289
              L+
Sbjct: 328 LPALI 332


>gi|325066331|ref|ZP_08125004.1| D-alanine--D-alanine ligase [Actinomyces oris K20]
          Length = 315

 Score =  118 bits (296), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 91/309 (29%), Positives = 156/309 (50%), Gaps = 20/309 (6%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59
           +AVL GG+S ER++SL SG   A  L+  G  V  +D+D R++G  L    PD+ + ++H
Sbjct: 8   IAVLAGGLSHERDISLRSGHRVAQVLKHLGHTVLVLDIDARTIG-SLKTFGPDVVWPLVH 66

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---- 115
           G  GEDG +Q +L  L +PY  +       +  K  +K  V + GV    S+ + +    
Sbjct: 67  GGPGEDGGLQNVLISLGLPYVGTHSDGCQRASFKPTAKASVRTGGVITPDSLTLPQSYFS 126

Query: 116 -------FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168
                   T+ + HL   P V+KP +GGS LG+        +   ++   +++  ++ LI
Sbjct: 127 QLGAQEVLTVVAGHL-GLPVVVKPHQGGSGLGVSYASTADELRSAMVACFAYD--ERALI 183

Query: 169 EQYVDGIELTCGVM--GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE 226
           E+Y+ G EL   V+  G+    +  + V     Y ++ +Y+   S + +PA++   + ++
Sbjct: 184 ERYIAGTELAVSVVDTGEGPRALPPVEVVTDGQYDFDARYNPGRSEYFVPARLDEAVIEK 243

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           V+  A   H  +G   +SR+D + D      F +++NV PGMT  S+ P +AA A  S  
Sbjct: 244 VKTTAVTVHTTLGLGNLSRTDLILDDEGTPWF-IDVNVIPGMTETSLLP-IAAKAEGSLE 301

Query: 287 ELLLWMVED 295
           EL   +V +
Sbjct: 302 ELYDALVRN 310


>gi|239637377|ref|ZP_04678359.1| D-alanine--D-alanine ligase [Staphylococcus warneri L37603]
 gi|239596977|gb|EEQ79492.1| D-alanine--D-alanine ligase [Staphylococcus warneri L37603]
          Length = 356

 Score =  118 bits (296), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 77/255 (30%), Positives = 132/255 (51%), Gaps = 16/255 (6%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-- 109
           D  F +LHG  GEDG +Q + E+L+IPY  +G+LA++ SMDK+  KQ+    G+P  P  
Sbjct: 89  DAVFPLLHGPNGEDGTIQGLFEVLDIPYVGNGVLAASSSMDKLVMKQLFEHRGLPQLPYI 148

Query: 110 SILVNRFTMDSQHL-------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
           S L + F     ++       +S P  +KP   GSS+GI     +  +   + ++  ++ 
Sbjct: 149 SFLRSEFEKYENNILKLVNDKLSYPVFVKPANLGSSVGISKCNNEDELKSGIKEAFQFDR 208

Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKI 219
             +L+IEQ V+  E+   V+G+   + T   E+ V    FY Y+ KY        +PA +
Sbjct: 209 --KLVIEQGVNAREIEVAVLGNDYPETTWPGEV-VKDVAFYDYKSKYKDGKIQLQIPADL 265

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279
             D+   ++ +A  A +A  C G+ R+DF F     +++  E N  PG T  S++P +  
Sbjct: 266 DQDVQMTLRNMALEAFKATDCSGLVRADF-FVTEDNQIYINETNAMPGFTSFSMYPSLWE 324

Query: 280 YAGYSFRELLLWMVE 294
             G S+ +L+  +++
Sbjct: 325 NMGLSYADLIAKLID 339


>gi|251799572|ref|YP_003014303.1| D-alanine/D-alanine ligase [Paenibacillus sp. JDR-2]
 gi|247547198|gb|ACT04217.1| D-alanine/D-alanine ligase [Paenibacillus sp. JDR-2]
          Length = 359

 Score =  118 bits (296), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 98/347 (28%), Positives = 161/347 (46%), Gaps = 57/347 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI------------------------ 36
           + VL GG S E EVSL +      ++ ++ ++   +                        
Sbjct: 5   LYVLYGGKSVEHEVSLKTAVTVLQSINESRYEAYPVYLTREGLWCTPPGPIAKDELTIER 64

Query: 37  --------DVDRSVGLVLAHL----KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84
                   D  RS+G +L+ +     P +   +LHG  GEDG VQ +LEL+ +PY  +G+
Sbjct: 65  LIATPTFPDPARSIGEILSGIMALPGPKVVLPLLHGPNGEDGTVQGLLELVNVPYVGNGV 124

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVNRFT----------MDSQHLISPPYVIKPLK 134
           L++AL++DK  SKQV++  G+       V R+             ++  I  P  +KP  
Sbjct: 125 LSAALTLDKAMSKQVLAQAGINQT-EYRVYRYEEWITDEESVLRKAEDSIEYPCYVKPAS 183

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD----ASLDVT 190
            GSS+GI        +   + ++ S++   +L+IE+ V G E+   V+G+    ASL   
Sbjct: 184 LGSSIGISRCTNRGELLAGIREAFSYD--KKLVIEREVSGREIQVAVIGNERPLASLPGE 241

Query: 191 EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
            I      F+ YE KY     T  +PA +   +   ++ LA  A+QA GC G++R DF  
Sbjct: 242 FIH--DHIFFDYESKYMDKRLTMQIPANLADGLTPRIRELAVRAYQAHGCEGLARVDFFL 299

Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYA-GYSFRELLLWMVEDA 296
           D    +++  EIN  PG T  S++P M     G ++ EL+  ++  A
Sbjct: 300 DG-EGQLYLNEINALPGFTNFSMYPVMWERTNGTTYSELIEQLIGHA 345


>gi|332299969|ref|YP_004441890.1| D-alanine--D-alanine ligase [Porphyromonas asaccharolytica DSM
           20707]
 gi|332177032|gb|AEE12722.1| D-alanine--D-alanine ligase [Porphyromonas asaccharolytica DSM
           20707]
          Length = 329

 Score =  118 bits (296), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 95/325 (29%), Positives = 146/325 (44%), Gaps = 36/325 (11%)

Query: 1   MAVLMGGISSEREVSLSSGKAC-------------------ASALEDAGFKVSQIDVDRS 41
           +A++ GG S E EVS  S +                     A ++ DA  K   ID    
Sbjct: 6   IAIICGGYSGEAEVSQRSAQTILKQIDQTLFTPYLVTITRDAWSVTDAEGKAGTIDHALV 65

Query: 42  VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
                A +   LA+  +HG  GE+GL+Q  L++L IPYT  G+L  AL+ +K      ++
Sbjct: 66  ARFGTAEVTFALAYITIHGTPGENGLLQGYLDMLGIPYTTGGVLCEALTFNKEACNAYLA 125

Query: 102 SCGVPV----CPSILVNRFTMDSQHLISP----PYVIKPLKGGSSLGIIVIKKDQSIPLD 153
             G+ +    C       F+ + Q LI      P  +KP  GGSS+    I  DQ   L 
Sbjct: 126 HHGLRIARSHCLRNHTREFSSEEQELIQSRLRLPLFVKPNTGGSSIATTRI--DQWEQLS 183

Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCG--VMGDAS--LDVTEIAVPKSDFYSYELKYSSL 209
              + ++     +LIE+ + G E+TCG  V+ D S  L VTE+ V    F+ Y+ KY   
Sbjct: 184 TAVADAYTAAPDVLIEECIVGTEVTCGCVVLPDDSFALPVTEV-VAHDTFFDYDAKYYG- 241

Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
            S  + PA+I  +  + VQ  +      + C G  R D++ +        LE+N  PGMT
Sbjct: 242 KSDEITPARISPEQTQRVQETSLTIAHLLDCYGFVRIDYIIEADGIPTL-LEVNTTPGMT 300

Query: 270 PVSIFPEMAAYAGYSFRELLLWMVE 294
             S  P+    AG    +L+  +++
Sbjct: 301 EASFIPQQVRAAGLQLSDLITRIIK 325


>gi|49484308|ref|YP_041532.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|282904750|ref|ZP_06312624.1| D-alanine--D-alanine ligase [Staphylococcus aureus subsp. aureus
           C160]
 gi|282906428|ref|ZP_06314279.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|295428670|ref|ZP_06821296.1| D-alanine-D-alanine ligase [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|56748623|sp|Q6GEZ1|DDL_STAAR RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|49242437|emb|CAG41151.1| D-alanine--D-alanine ligase [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|282330378|gb|EFB59896.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282594783|gb|EFB99760.1| D-alanine--D-alanine ligase [Staphylococcus aureus subsp. aureus
           C160]
 gi|295127340|gb|EFG56980.1| D-alanine-D-alanine ligase [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|315193242|gb|EFU23640.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus
           CGS00]
          Length = 356

 Score =  118 bits (296), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 89/300 (29%), Positives = 151/300 (50%), Gaps = 32/300 (10%)

Query: 8   ISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP-DLAFNVLHGNFGEDG 66
           I S  E+ L +G+A          ++SQ+  + S G      +P D  F +LHG  GEDG
Sbjct: 59  IKSTDELHLENGEA---------LEISQLLKESSSG------QPYDAVFPLLHGPNGEDG 103

Query: 67  LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-QHLI- 124
            +Q + E+L++PY  +G+L++A SMDK+  KQ+    G+P  P I   R   +  +H I 
Sbjct: 104 TIQGLFEVLDVPYVGNGVLSAASSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYEHNIL 163

Query: 125 -------SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
                  + P  +KP   GSS+GI     +  +   + ++  ++   +L+IEQ V+  E+
Sbjct: 164 KLVNDKLNYPVFVKPANLGSSIGISKCSNEVELKEGIKEAFQFDR--KLVIEQGVNAREI 221

Query: 178 TCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
              V+G+   + T   E+ V    FY Y+ KY        +PA +  D+   ++ +A  A
Sbjct: 222 EVAVLGNDYPEATWPGEV-VKDVAFYDYKSKYKDGKVQLQIPADLDEDVQLTLRNMALEA 280

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            +A  C G+ R+DF F     +++  E N  PG T  S++P++    G S+ EL+  ++E
Sbjct: 281 FKATDCSGLVRADF-FVTEDNQIYINETNAMPGFTAFSMYPKLWENMGLSYPELITKLIE 339


>gi|309813274|ref|ZP_07706990.1| D-ala D-ala ligase N-terminal domain protein [Dermacoccus sp.
           Ellin185]
 gi|308432770|gb|EFP56686.1| D-ala D-ala ligase N-terminal domain protein [Dermacoccus sp.
           Ellin185]
          Length = 373

 Score =  118 bits (296), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 81/261 (31%), Positives = 132/261 (50%), Gaps = 23/261 (8%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+   +LHG FGEDG +Q +LEL ++ Y  SG+ ASA+ MDK   K V  + G+PV P +
Sbjct: 108 DVVLPLLHGPFGEDGTLQGLLELADLRYVGSGVTASAVMMDKHMMKIVFEAAGLPVGPYV 167

Query: 112 LVN--------RFTMDSQHLISPPYVIKPLKGGSSLGI-IVIKKDQ-SIPLDLLQSSSWN 161
           ++            M S   +  P  +KP + GSS+GI  V  +DQ    ++L + S   
Sbjct: 168 VITDKQWRRDKDAAMASLTPLRYPVFVKPARAGSSVGISKVDSRDQLEAAIELARESD-- 225

Query: 162 HGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD-------FYSYELKYSSLNSTHV 214
              +++IE  + G E+ CGV+     D+   +            FY +E KY + +   +
Sbjct: 226 --PKVVIEAGIVGREVECGVLEGHGSDLPRASELGEIEEIGEHAFYDFEAKYLNDDGLRL 283

Query: 215 -LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273
             PA +  +    ++ L+  A  A GC G++R D+ +      +F  EIN  PG TPVS+
Sbjct: 284 ACPADVSAEDTARIKELSIKAFDAAGCEGLARVDWFYT-AEGTLFLNEINTLPGFTPVSM 342

Query: 274 FPEMAAYAGYSFRELLLWMVE 294
           FP +   +G  + +L+  ++E
Sbjct: 343 FPAVWRESGLDYTDLITDLIE 363


>gi|330684802|gb|EGG96495.1| D-ala D-ala ligase N-terminal domain protein [Staphylococcus
           epidermidis VCU121]
          Length = 356

 Score =  118 bits (295), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 77/255 (30%), Positives = 132/255 (51%), Gaps = 16/255 (6%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-- 109
           D  F +LHG  GEDG +Q + E+L+IPY  +G+LA++ SMDK+  KQ+    G+P  P  
Sbjct: 89  DAVFPLLHGPNGEDGTIQGLFEVLDIPYVGNGVLAASSSMDKLVMKQLFEHRGLPQLPYI 148

Query: 110 SILVNRFTMDSQHL-------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
           S L + F     ++       +S P  +KP   GSS+GI     +  +   + ++  ++ 
Sbjct: 149 SFLRSEFEKYENNILKLVNDKLSYPVFVKPANLGSSVGISKCNNEDELKSGIKEAFQFDR 208

Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKI 219
             +L+IEQ V+  E+   V+G+   + T   E+ V    FY Y+ KY        +PA +
Sbjct: 209 --KLVIEQGVNAREIEVAVLGNDYPETTWPGEV-VKDVAFYDYKSKYKDGKIQLQIPADL 265

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279
             D+   ++ +A  A +A  C G+ R+DF F     +++  E N  PG T  S++P +  
Sbjct: 266 DQDVQMTLRNMALEAFKATDCSGLVRADF-FVTEDNQIYINETNAMPGFTSFSMYPSLWE 324

Query: 280 YAGYSFRELLLWMVE 294
             G S+ +L+  +++
Sbjct: 325 NMGLSYADLIAKLID 339


>gi|160903079|ref|YP_001568660.1| D-alanine--D-alanine ligase [Petrotoga mobilis SJ95]
 gi|190359202|sp|A9BI46|DDL_PETMO RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|160360723|gb|ABX32337.1| D-alanine--D-alanine ligase [Petrotoga mobilis SJ95]
          Length = 298

 Score =  118 bits (295), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 88/304 (28%), Positives = 155/304 (50%), Gaps = 24/304 (7%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-VDRSVGLVLAHLKPDLAFNVLH 59
           + ++ GG S ERE+SL+S K   +++ + G+K   +D +D      + + K   AFNV+H
Sbjct: 3   IPIITGGKSKEREISLTSAKNVFNSISNLGYKPVILDLIDDDFINKIQNYK--FAFNVVH 60

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G++GEDG + ++LE+L I YT S       + DK     +  +        I + + T+ 
Sbjct: 61  GDYGEDGRLPSLLEILGIDYTCSNPETCIATYDKFIFYSLFKNY-------IQMPQTTLT 113

Query: 120 SQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
           ++ ++ P   P++IKP K GSS G+ +I  +      L          ++L+++Y+ G E
Sbjct: 114 NKLILPPFEYPFIIKPRKSGSSKGVYIIHNENEYKFYL--EKDLKEFQEVLVQEYIKGRE 171

Query: 177 LTCGVMGDAS----LDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLA 231
           +T   +        L + EI +PK +FY YE KY++   T + P    P  I +++  + 
Sbjct: 172 ITISYIQKNEEFILLPILEI-IPKKEFYDYEAKYTN-GLTELKPQLNSPEKIIQKINEIG 229

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               Q +  + + R D +      +V+ LEIN  PG+T +S  P  A  AG SF EL+  
Sbjct: 230 NHVMQTLTFKDMFRIDAILK--DDEVYVLEINTVPGLTELSDLPTSALAAGISFDELINI 287

Query: 292 MVED 295
           ++++
Sbjct: 288 IIKN 291


>gi|254967066|gb|ACT97571.1| putative D-alanine-D-alanine ligase [uncultured organism]
          Length = 332

 Score =  118 bits (295), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 92/331 (27%), Positives = 157/331 (47%), Gaps = 44/331 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-----------------DRS-- 41
           +A++ GG SSE +VSL S +   S  +   + V  +DV                 DR+  
Sbjct: 8   IAIVCGGDSSEHDVSLRSAQGLYSFFDKERYDVYIVDVRGTDWRVQLPDGEEAKIDRNDF 67

Query: 42  --VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
             V      +  D A+  +HG  GE+G +Q   +L+ +PY+ SG+L  A++ DK    + 
Sbjct: 68  SFVKTDGTAVVFDYAYITIHGQPGENGPMQGYFDLIHVPYSTSGVLVEAMTFDKFVLNRY 127

Query: 100 VSSCGVPVCPSILVNRFTMDSQHLISP----PYVIKPLKGGSSLGIIVIKK-DQSIP--- 151
           + S G+ V  S+L+ R    ++  I+     P  +KP   GSS G+  +K  DQ  P   
Sbjct: 128 LGSFGIHVADSVLLRRGETYNEEEIAKRIGMPCFVKPANDGSSFGVSKVKNADQLEPALR 187

Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV----TEIAVPKSDFYSYELKYS 207
           +  ++SS       +++E Y+DG E+T G+       V    TE+ V  ++F+ Y+ KY+
Sbjct: 188 VAFMESSD------VMVEAYLDGTEITQGIYKTRERSVPFPITEV-VTTNEFFDYDAKYN 240

Query: 208 SLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF--DPLSRKVF-WLEINV 264
                 + PA+I  +  + V  +    +  +   GI R D++   D    +V   LE+N 
Sbjct: 241 G-QVDEITPARISPETAERVTEITSRIYDILHANGIIRIDYIITHDAEGNEVINMLEVNT 299

Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
            PGMT  S  P+    AG   +++L  ++E+
Sbjct: 300 TPGMTTTSFIPQQVRAAGLDIKDVLTEIIEN 330


>gi|225010883|ref|ZP_03701350.1| D-alanine/D-alanine ligase [Flavobacteria bacterium MS024-3C]
 gi|225004930|gb|EEG42885.1| D-alanine/D-alanine ligase [Flavobacteria bacterium MS024-3C]
          Length = 323

 Score =  118 bits (295), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 95/317 (29%), Positives = 155/317 (48%), Gaps = 34/317 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS------------------V 42
           +AV+MGG +SE E+SL SG   A+ L+   ++V  I + ++                   
Sbjct: 5   IAVIMGGYTSEFEISLKSGAVVAAHLDPDKYEVYPIVITKNRWTYTTDHGAVYAIQKENF 64

Query: 43  GLVLAHLKP--DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
            L L H K   D  FN +HG+ GEDG +QA LELL IP T      +AL+ +K     V+
Sbjct: 65  SLELPHKKVLFDGVFNAIHGSPGEDGKIQAYLELLGIPQTACDFYQAALTYNKRDLLSVL 124

Query: 101 SSCGVPVCPSILVNRFT-MDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
              G+ +  S  +N    ++ + +I     P  +K  + GSS GI  +     I   L  
Sbjct: 125 KPYGIAMAKSYYLNFGDPINKEAIIKKVGLPCFVKANRSGSSYGISKVYTSDQIEAAL-- 182

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNST 212
             ++    +++IE  + G E++ GV+        L +TEI + ++DF+ Y+ KY    ST
Sbjct: 183 EIAFKEDKEVIIESALVGREVSVGVIQYQGKTKVLPITEI-LSENDFFDYQAKYEG-KST 240

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
            + PA +  ++  ++  +A   +  +  +G +RS+F+   ++     LE+N  PGMT  S
Sbjct: 241 EITPADLEPELEDKIIAVATFIYNTLNLKGFTRSEFIL--VNNVPHLLEVNTTPGMTQHS 298

Query: 273 IFPEMAAYAGYSFRELL 289
           I P+ A  AG S  EL 
Sbjct: 299 ILPQQAKEAGISLPELF 315


>gi|254967061|gb|ACT97568.1| putative D-alanine-D-alanine ligase [uncultured organism]
          Length = 332

 Score =  118 bits (295), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 92/331 (27%), Positives = 157/331 (47%), Gaps = 44/331 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-----------------DRS-- 41
           +A++ GG SSE +VSL S +   S  +   + V  +DV                 DR+  
Sbjct: 8   IAIVCGGDSSEHDVSLRSAQGLYSFFDKERYDVYIVDVRGTDWRVQLPDGEEAKIDRNDF 67

Query: 42  --VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
             V      +  D A+  +HG  GE+G +Q   +L+ +PY+ SG+L  A++ DK    + 
Sbjct: 68  SFVKTDGTAVVFDYAYITIHGQPGENGPMQGYFDLIHVPYSTSGVLVEAMTFDKFVLNRY 127

Query: 100 VSSCGVPVCPSILVNRFTMDSQHLISP----PYVIKPLKGGSSLGIIVIKK-DQSIP--- 151
           + S G+ V  S+L+ R    ++  I+     P  +KP   GSS G+  +K  DQ  P   
Sbjct: 128 LGSFGIHVADSVLLRRGETYNEEEIAKRIGMPCFVKPANDGSSFGVSKVKNADQLEPALR 187

Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV----TEIAVPKSDFYSYELKYS 207
           +  ++SS       +++E Y+DG E+T G+       V    TE+ V  ++F+ Y+ KY+
Sbjct: 188 VAFMESSD------VMVEAYLDGTEITQGIYKTRERSVPFPITEV-VTTNEFFDYDAKYN 240

Query: 208 SLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF--DPLSRKVF-WLEINV 264
                 + PA+I  +  + V  +    +  +   GI R D++   D    +V   LE+N 
Sbjct: 241 G-QVDEITPARISPETAERVTEITSRIYDILHANGIIRIDYIITHDAEGNEVINMLEVNT 299

Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
            PGMT  S  P+    AG   +++L  ++E+
Sbjct: 300 TPGMTTTSFIPQQVRAAGLDIKDVLTEIIEN 330


>gi|284032723|ref|YP_003382654.1| D-alanine/D-alanine ligase [Kribbella flavida DSM 17836]
 gi|283812016|gb|ADB33855.1| D-alanine/D-alanine ligase [Kribbella flavida DSM 17836]
          Length = 377

 Score =  118 bits (295), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 89/259 (34%), Positives = 131/259 (50%), Gaps = 25/259 (9%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+ F +LHG +GEDG +Q +LE+ +I Y  SG+LASA+ MDK   K V ++ G+ V P +
Sbjct: 108 DVVFPLLHGPWGEDGTLQGLLEMSDIRYVGSGVLASAVGMDKHYMKVVFAAAGLEVGPYV 167

Query: 112 LV--NRFTMDSQ------HLISPPYVIKPLKGGSSLGI-IVIKKDQSIPLDLLQSSSWNH 162
           ++    +T D Q        +  P  +KP +GGSSLGI  V   D+   LD   + +  H
Sbjct: 168 VIRDRDWTRDPQACRTAVDQLGYPVFVKPARGGSSLGISKVTSLDE---LDAAIAEARAH 224

Query: 163 GDQLLIEQYVDG---IELTCGVMGDASLD----VTEIAVPKS--DFYSYELKYSSLNSTH 213
             ++++E  V     IE+      +  L       E+AV     DFY +E KY      +
Sbjct: 225 DPKVIVEASVKNPREIEVGVLGGLNGGLPQVSVCGEVAVSGGGHDFYDFETKYLPEGEQY 284

Query: 214 V---LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270
               +PA +P  I  E++  A  A  AI   G++R DF  D   R V   EIN  PG TP
Sbjct: 285 TALSVPADLPEQIAAEIRAKALTAFDAIEGEGLARVDFFVDEDGR-VLINEINTMPGFTP 343

Query: 271 VSIFPEMAAYAGYSFRELL 289
            S+FP + A +G  +  L+
Sbjct: 344 TSMFPRLWAASGMDYPSLV 362


>gi|197285102|ref|YP_002150974.1| D-alanine:D-alanine ligase A [Proteus mirabilis HI4320]
 gi|227355529|ref|ZP_03839924.1| D-alanine:D-alanine ligase A [Proteus mirabilis ATCC 29906]
 gi|229485975|sp|B4ETX3|DDL_PROMH RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|194682589|emb|CAR42650.1| D-alanine:D-alanine ligase A [Proteus mirabilis HI4320]
 gi|227164325|gb|EEI49214.1| D-alanine:D-alanine ligase A [Proteus mirabilis ATCC 29906]
          Length = 366

 Score =  118 bits (295), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 91/347 (26%), Positives = 164/347 (47%), Gaps = 57/347 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD--------------------- 39
           +A++ GG S+E +VSL S K   + L+   F +  I ++                     
Sbjct: 6   VAIIFGGKSTEHQVSLQSAKNIINELDRTKFDLCLIGINEQGQWHEYAEDNYLINSDNPS 65

Query: 40  --------RSVGLV----------LAHLKP----DLAFNVLHGNFGEDGLVQAILELLEI 77
                   R V ++          L   +P    D+ F ++HG +GEDG +Q +L ++++
Sbjct: 66  TISLSQPLRPVAIIPGSTRQQFISLTDGQPLAQIDVVFPIVHGAYGEDGTLQGLLHMIDM 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVIK 131
           PY    I++SA  MDK  +K+++   G+ V P I +    ++          +  P  IK
Sbjct: 126 PYVGPNIMSSAACMDKDITKRLLDDAGLAVAPFITLMAHQLNDISYNEVVEQLGLPLFIK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT- 190
           P   GSS+GI  +  +      L  S ++ +  +++IE  + G E+ C V+G+   +V+ 
Sbjct: 186 PANLGSSVGISKVNNEAEFNAAL--SMAFEYDLKVIIESAIVGREIECAVLGNEEPEVSP 243

Query: 191 --EIAVPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
             EI +  + FY+Y  KY   +    V+PA +   I   +++ A  A+Q + C G+SR D
Sbjct: 244 CGEIVLNDA-FYAYNTKYIDDDGAKVVVPADLDNAISLHIRQTALKAYQVLNCLGMSRVD 302

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            +F     +V   EIN  PG T +S++P++    G  ++ L+  ++E
Sbjct: 303 -VFLTEDNQVIINEINTLPGFTNISMYPKLWQSTGLDYQSLITKLIE 348


>gi|14719504|pdb|1E4E|B Chain B, D-Alanyl-D-Lacate Ligase
          Length = 343

 Score =  118 bits (295), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 84/275 (30%), Positives = 135/275 (49%), Gaps = 12/275 (4%)

Query: 22  CASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81
           C SA+     K+  + V ++    + H+  D+AF+ LHG  GEDG +Q + EL  IP+  
Sbjct: 64  CYSAVLSPDKKMHGLLVKKNHEYEINHV--DVAFSALHGKSGEDGSIQGLFELSGIPFVG 121

Query: 82  SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGI 141
             I +SA+ MDK  +  V  + G+      ++N+         + P  +KP + GSS G 
Sbjct: 122 CDIQSSAICMDKSLTYIVAKNAGIATPAFWVINKDDRPVAATFTYPVFVKPARSGSSFG- 180

Query: 142 IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD-ASLDVTEIAVPKSDFY 200
            V K + +  LD    S+  +  ++LIEQ V G E+ C V+G+ A+L V E+   +  + 
Sbjct: 181 -VKKVNSADELDYAIESARQYDSKILIEQAVSGCEVGCAVLGNSAALVVGEVDQIRLQYG 239

Query: 201 SY------ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
            +      E +  S N+   +PA +  +    +Q      ++ +GCRG++R D       
Sbjct: 240 IFRIHQEVEPEKGSENAVITVPADLSAEERGRIQETVKKIYKTLGCRGLARVDMFLQDRG 299

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           R V   E+N  PG T  S +P M A AG S  EL+
Sbjct: 300 RIVL-NEVNTLPGFTSYSRYPRMMAAAGISLPELI 333


>gi|297589853|ref|ZP_06948493.1| D-alanine--D-alanine ligase [Staphylococcus aureus subsp. aureus
           MN8]
 gi|297576981|gb|EFH95695.1| D-alanine--D-alanine ligase [Staphylococcus aureus subsp. aureus
           MN8]
          Length = 393

 Score =  118 bits (295), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 92/338 (27%), Positives = 160/338 (47%), Gaps = 48/338 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVS------------------------QI 36
           + ++ GG S+E EVS+ + +   +A++   + V                         ++
Sbjct: 43  ICIVFGGKSAEHEVSILTAQNVLNAIDKDKYHVDIIYITNDGDWRKQNNITTEIKSTDEL 102

Query: 37  DVDRSVGLVLAHL-------KP-DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
            ++    L ++ L       +P D  F +LHG  GEDG +Q + E+L++PY  +G+L++A
Sbjct: 103 HLENGEALEISQLLKESSSGQPYDAVFPLLHGPNGEDGTIQGLFEVLDVPYVGNGVLSAA 162

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-QHLI--------SPPYVIKPLKGGSSL 139
            SMDK+  KQ+    G+P  P I   R   +  +H I        + P  +KP   GSS+
Sbjct: 163 SSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYEHNILKLVNDKLNYPVFVKPANLGSSI 222

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPK 196
           GI   K    + L      ++    +L+IEQ V+  E+   V+G+   + T   E+ V  
Sbjct: 223 GI--SKCSNEVELKEGIKEAFQFDRKLVIEQGVNAREIEVAVLGNDYPEATWPGEV-VKD 279

Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256
             FY Y+ KY        +PA +  D+   ++ +A  A +A  C G+ R+DF F     +
Sbjct: 280 VAFYDYKSKYKDGKVQLQIPADLDEDVQLTLRNMALEAFKATDCSGLVRADF-FVTEDNQ 338

Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           ++  E N  PG T  S++P++    G S+ EL+  ++E
Sbjct: 339 IYINETNAMPGFTAFSMYPKLWENMGLSYPELITKLIE 376


>gi|11527846|gb|AAG37026.1|AF277571_3 D-alanine:D-lactate ligase [Enterococcus faecium]
 gi|27461217|gb|AAM09849.1| D-alanine:D-lactate ligase [Enterococcus faecium]
          Length = 343

 Score =  118 bits (295), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 85/331 (25%), Positives = 155/331 (46%), Gaps = 45/331 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           +AVL GG S E +VS+ S    A+ +    ++   I + +S    L              
Sbjct: 6   IAVLFGGCSEEHDVSVKSAMEVAANINKEKYQPFYIGITKSGAWKLCDKPCRDWENYAGY 65

Query: 47  -AHLKPD--------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
            A + PD                    +   ++HG FGEDG +Q +LEL  IPY    I 
Sbjct: 66  PAVISPDRRIHGLLIQKDGGYESQPVDVVLPMIHGKFGEDGTIQGLLELSGIPYVGCDIQ 125

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145
           +S + MDK  +  VV + G+ V    ++ +        +S P  +KP + GSS G+  + 
Sbjct: 126 SSVICMDKSLAYMVVKNAGIEVPGFRVLQKGDSLEAETLSYPVFVKPARSGSSFGVNKVC 185

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYS 201
           + + +   + ++  ++   ++L+E+ V G E+ C ++G+     + +V +I +    F  
Sbjct: 186 RAEELQAAVTEAGKYD--SKILVEEAVSGSEVGCAILGNGNDLITGEVDQIELKHGFFKI 243

Query: 202 YEL---KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
           ++    +  S N+   +PA +P ++ +++Q  A   ++ +GCRG++R D LF      + 
Sbjct: 244 HQEAQPEKGSENAVIRVPAALPDEVREQIQETAKKIYRVLGCRGLARID-LFLREDGSIV 302

Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
             E+N  PG T  S +P M   AG++  E+L
Sbjct: 303 LNEVNTMPGFTSYSRYPRMMTAAGFTLSEIL 333


>gi|326332503|ref|ZP_08198776.1| D-alanine--D-lactate ligase [Nocardioidaceae bacterium Broad-1]
 gi|325949693|gb|EGD41760.1| D-alanine--D-lactate ligase [Nocardioidaceae bacterium Broad-1]
          Length = 350

 Score =  118 bits (295), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 95/306 (31%), Positives = 152/306 (49%), Gaps = 33/306 (10%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQIDVDRSV-GLVL----------AHLKPDLAF 55
           GI+   +  L  G    ++ ED   +   +  DRSV GL++            ++ D+  
Sbjct: 42  GITKSGDWRLCDGPE--ASWEDGAHRPVVLSPDRSVHGLLVLDQDDHGGSYETIRLDVVL 99

Query: 56  NVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR 115
            VLHG  GEDG  Q + EL  IPY    + +SAL MDK  +  VV+  G+P  P+     
Sbjct: 100 PVLHGKLGEDGAPQGLFELSGIPYVGCDVQSSALCMDKSLAYTVVAEAGIPT-PTF---- 154

Query: 116 FTMDSQHLISP-----PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +T+     I P     P  +KP + GSS G  V K   +  LD   +++  + +++LIE+
Sbjct: 155 WTLYPGDEIDPGVLPYPVFVKPARSGSSFG--VSKVSSAAELDEAIATARQYDEKVLIEE 212

Query: 171 YVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSYEL---KYSSLNSTHVLPAKIPLDI 223
            V   E+ C ++G+     + +V  +A+    F  ++    +  S N+T ++PA IP + 
Sbjct: 213 GVVAEEIGCAILGNGADLVTGEVDHVALSHGFFKIHQEDAPETGSENATFIVPADIPAEA 272

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283
            + V+  A   ++A+GCRG++R D +F      V   E+N  PG+T  S +P M A AG 
Sbjct: 273 QELVKTEAQRVYRALGCRGLARVD-MFLKADGTVVLNEVNTLPGLTSYSRYPRMMAAAGI 331

Query: 284 SFRELL 289
           S  ELL
Sbjct: 332 SMTELL 337


>gi|327329971|gb|EGE71725.1| D-alanine--D-alanine ligase [Propionibacterium acnes HL097PA1]
          Length = 365

 Score =  117 bits (294), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 80/259 (30%), Positives = 124/259 (47%), Gaps = 20/259 (7%)

Query: 53  LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
           + F VLHG FGEDG +Q +LE+  + Y   G+ ASA  MDK  +K ++S  GV V   ++
Sbjct: 100 VVFPVLHGPFGEDGTIQGLLEMAGVRYVGCGVAASANCMDKHLTKMILSEAGVLVGRYVV 159

Query: 113 V--------NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164
           V            + +   +  P  +KP +GGSS+GI  +   +   L+     +  H  
Sbjct: 160 VRDHEWREDRNAVLKAASRLEYPLFVKPARGGSSIGISRVTSPEH--LETAIEMAREHDS 217

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKS-------DFYSYELKYSSLNSTHVLPA 217
           ++LIEQ + G E+ C V+          +VP          FY +E KY S      + A
Sbjct: 218 KVLIEQGIRGREIECSVIDGRHGAAPRASVPGEIVVHDPDGFYDFEAKYLSGEQKASVQA 277

Query: 218 KIPLD--IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275
              LD    + VQ++A  A Q +GC G++R D    P    V+  E N  PG T  S FP
Sbjct: 278 HANLDDATRRRVQKVAIKAFQVLGCEGLARIDTFVTP-DGAVYVNEPNTMPGFTRSSGFP 336

Query: 276 EMAAYAGYSFRELLLWMVE 294
            M   +G ++ +++  ++E
Sbjct: 337 LMWQASGMTYAQIVSELIE 355


>gi|6448488|emb|CAB61227.1| vana protein [Bacillus circulans]
          Length = 343

 Score =  117 bits (294), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 94/332 (28%), Positives = 149/332 (44%), Gaps = 47/332 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +A+L GG S E +VS+ S    A+ ++   ++   I + +S G+     KP         
Sbjct: 6   VAILFGGCSEEHDVSVKSAIEIAANIDKEKYETLYIGITKS-GVWKMCEKPCVEWENDNC 64

Query: 52  ---------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84
                                      D+AF+VLHG  GEDG +Q + EL  IP+    I
Sbjct: 65  CSAVLSPDKKMHGLLVKKNHEYEIDHVDVAFSVLHGKSGEDGSIQGLFELSGIPFVGCDI 124

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
            +SA+ MDK  +  V  + G+      + N+         + P  +KP + GSS G  V 
Sbjct: 125 QSSAICMDKSLTYIVAENAGIATPEFWVFNKDDKPMADTFTYPVFVKPARSGSSFG--VK 182

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL----DVTEIAVPKSDFY 200
           K + +  LD     +  +  ++LIEQ V G E+ C V+G++S     +V +I +    F 
Sbjct: 183 KVNGADELDAAIELAGQYDSKILIEQAVLGCEVGCAVLGNSSAFVVGEVDQIRLQHGIFR 242

Query: 201 SY---ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
            +   E +  S N+   +PA +  +    +Q  A   + A+GCRG++R D       R V
Sbjct: 243 IHQEAEPEKGSENAVITVPADLSAEERGRIQETAKKIYNALGCRGLARVDMFLQDNGRIV 302

Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
              E+N  PG T  S +P M A  G +F EL+
Sbjct: 303 L-NEVNTLPGFTSYSRYPRMMAAVGIAFPELI 333


>gi|33519925|ref|NP_878757.1| D-alanyl-alanine synthetase A [Candidatus Blochmannia floridanus]
 gi|39930853|sp|Q7VRX1|DDL_BLOFL RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|33504271|emb|CAD83163.1| D-alanine:D-alanine ligase A [Candidatus Blochmannia floridanus]
          Length = 354

 Score =  117 bits (294), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 77/257 (29%), Positives = 135/257 (52%), Gaps = 17/257 (6%)

Query: 49  LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
           L  D+ F ++HG  GEDG +Q +L L+ +PY  S +L SA+ MDK  +K+++   G+ + 
Sbjct: 92  LSLDVIFPIIHGALGEDGSLQGLLRLMNLPYVGSDVLGSAICMDKDITKRLLRDSGLSIT 151

Query: 109 P--SILVN-----RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN 161
           P  + L +     +F ++   +   P+ +KP+  GSS+G+  +  D S    L  +  ++
Sbjct: 152 PFRTFLAHEKKKLKF-LNFADMFGLPFFVKPVNQGSSIGVAKVNDDYSFHSALDIAFFYS 210

Query: 162 HGDQLLIEQYVDGIELTCGVMGDASLDVT----EIAVPKSDFYSYELKYSSLNSTHVLPA 217
           H  +++IE  + G EL C V+G+    +T    EI     DFY+Y  KY   NS  V+PA
Sbjct: 211 H--KIIIESCIAGRELECAVLGNNENPITSVCGEIIKKNDDFYTYCDKYVDHNSEIVIPA 268

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSD-FLFDPLSRKVFWLEINVQPGMTPVSIFPE 276
            +   +  +++ +A    Q + C G++R D FLF     ++   E+N  PG T  S++ +
Sbjct: 269 VLEKSVSSKIRSIAIRVFQILNCFGMARVDIFLFG--KDRIIINEVNTLPGFTSDSMYLK 326

Query: 277 MAAYAGYSFRELLLWMV 293
           +    G +   LL  ++
Sbjct: 327 LWQATGINISTLLTRLI 343


>gi|325925852|ref|ZP_08187221.1| D-alanine--D-alanine ligase [Xanthomonas perforans 91-118]
 gi|325543683|gb|EGD15097.1| D-alanine--D-alanine ligase [Xanthomonas perforans 91-118]
          Length = 246

 Score =  117 bits (294), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 73/231 (31%), Positives = 127/231 (54%), Gaps = 14/231 (6%)

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT---MDSQHLISP---P 127
           +  +P+  SGIL SA++MDK  +K+V+   G+ V P +  NR T    D + LI+    P
Sbjct: 1   MANLPFVGSGILGSAVAMDKDMAKRVLRDAGLAVAPFVCFNRHTAAMADVEALIAQLGLP 60

Query: 128 YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL 187
             +KP   GSS+G+  ++        L  + +++H  ++L+E  + G E+ C V+G+A+ 
Sbjct: 61  LFVKPANQGSSVGVSQVRSADQFAAALALALAYDH--KVLVEAAIAGREIECAVLGNATP 118

Query: 188 DVT---EIAVPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
             +   E+ V  + FYSY+ KY S +    V+PA I     + +Q++A  A+QA+ C G+
Sbjct: 119 QASVCGEVVVHDA-FYSYQTKYISEHGAEIVIPADIDARTQQRIQQIAVQAYQALDCAGL 177

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           +R D       R V   E+N  PG T +S++P++   +G  +R L+  ++E
Sbjct: 178 ARVDVFLCADGRIVIN-EVNTLPGFTRISMYPKLWQASGLDYRSLITRLIE 227


>gi|260593409|ref|ZP_05858867.1| D-alanine--D-alanine ligase [Prevotella veroralis F0319]
 gi|260534685|gb|EEX17302.1| D-alanine--D-alanine ligase [Prevotella veroralis F0319]
          Length = 332

 Score =  117 bits (294), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 95/327 (29%), Positives = 153/327 (46%), Gaps = 37/327 (11%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40
           +A++ GG SSE +VS+ S +   S  +   + +  +DV                    D 
Sbjct: 8   IAIVCGGDSSEHDVSMHSAQGLYSFFDKERYNIYIVDVKGIDWHVELEDGTSAPIDKNDF 67

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           S      H++ D A+  +HG  GE+G++Q   +L+ +PY+ S +L  AL+ DK      +
Sbjct: 68  SFIENGKHIEFDYAYITIHGAPGENGIMQGYFDLIHLPYSTSSVLVEALTFDKYVLNNYL 127

Query: 101 SSCGVPVCPSILVNR----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKK-DQSIPLDLL 155
              GV V  SIL+ R       + +  +  P  +KP   GSS G+  +K  DQ  P   +
Sbjct: 128 RGFGVNVADSILLRRGEEYNEEEIEKRLGMPCFVKPAADGSSFGVSKVKNIDQLAPALRV 187

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGV--MGDASL--DVTEIAVPKSDFYSYELKYSSLNS 211
              ++   D+++IE ++DG E++ GV    D S+    TE+ V  ++F+ Y  KY+    
Sbjct: 188 ---AFMESDEVMIEGFLDGTEISQGVYKTKDKSIVFPATEV-VTSNEFFDYNAKYNG-QV 242

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF--DPLSRKVF-WLEINVQPGM 268
             + PA+I  D  K V       +  +   GI R D++   D     V   LEIN  PGM
Sbjct: 243 QEITPARINPDTAKRVAAETSRIYDILHANGIIRIDYIISKDKEGNDVINMLEINTTPGM 302

Query: 269 TPVSIFPEMAAYAGYSFRELLLWMVED 295
           T  S  P+    AG   +E+L  +VE+
Sbjct: 303 TATSFIPQQVRAAGLDIKEVLSEIVEN 329


>gi|116333877|ref|YP_795404.1| D-alanine-D-alanine ligase related ATP-grasp enzyme [Lactobacillus
           brevis ATCC 367]
 gi|122269436|sp|Q03QZ9|DDL_LACBA RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|116099224|gb|ABJ64373.1| D-alanine--D-alanine ligase [Lactobacillus brevis ATCC 367]
 gi|238767638|dbj|BAH66654.1| D-alanine:D-alanine ligase [Lactobacillus brevis]
          Length = 380

 Score =  117 bits (294), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 97/345 (28%), Positives = 170/345 (49%), Gaps = 56/345 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVS-------------------------- 34
           + +L GG SSE +VS  S      A++   + VS                          
Sbjct: 9   VGLLFGGNSSEHDVSKRSAHNIYDAMDKDRYNVSLFLLTRDGFVLSDAASRRVFDGEDEA 68

Query: 35  ------QIDVDRSVGLV----LAHLKP-DLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                 Q  VD S  L     L+  K  D+ F ++HGN GEDG +Q +  LL+ P+  SG
Sbjct: 69  TVAAEEQAKVDASNPLAPIWNLSQAKDIDVFFPIIHGNLGEDGTIQGLFRLLKKPFVGSG 128

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFTMDS---QHLISPPYVIKPLKGGS 137
           +LASA+S DK  +KQV+++ G+     +++   NR   D    Q  +     IKP   GS
Sbjct: 129 VLASAVSFDKDMTKQVLTAHGIRNTKYVVLTPDNRADFDYATIQSRLGDNVFIKPANQGS 188

Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTE---IA 193
           S+GI      Q   LD + + ++ +  ++L+EQ +DG  E+   ++G+     ++   I 
Sbjct: 189 SVGIHKASNVQEY-LDGV-ADAFRYDYKVLVEQTIDGPQEVEISILGNEQPQASKLGAIR 246

Query: 194 VPKSD-FYSYELKYSSLNS-THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
           VP+SD FY Y  K+   +  T  +P K+  ++ +E+ ++    + A+G +G++R D+L  
Sbjct: 247 VPESDVFYDYNNKFVDASGVTFEVPVKLSDELTQEITQMGLQTYAALGLKGMARIDYL-- 304

Query: 252 PLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            +S+    +  E+N  PG T +S++P++    G ++ +L+  ++E
Sbjct: 305 -VSKDGVPYVGEVNTLPGFTNISLYPQLWQATGINYADLIDRLIE 348


>gi|293366048|ref|ZP_06612736.1| D-alanine-D-alanine ligase [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|291319771|gb|EFE60129.1| D-alanine-D-alanine ligase [Staphylococcus epidermidis
           M23864:W2(grey)]
          Length = 362

 Score =  117 bits (294), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 86/338 (25%), Positives = 163/338 (48%), Gaps = 48/338 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI----------------DVDRSVGL 44
           + ++ GG S+E +VS+ + +   +A++   ++V  I                ++  +  L
Sbjct: 11  ICIVFGGKSAEHDVSILTAQNVLNAIDKERYQVDIIYITNDGEWKKKDNITQEIKNTDEL 70

Query: 45  VLAHLKP----------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
           V+  ++                 D  F +LHG  GEDG +Q + E+L+IPY  +G+LA++
Sbjct: 71  VINDVETGEISQLLSKGSLGKSYDAVFPLLHGPNGEDGTIQGLFEVLDIPYVGNGVLAAS 130

Query: 89  LSMDKMRSKQVVSSCGVPVCP--SILVNRFTMDSQHLI-------SPPYVIKPLKGGSSL 139
            SMDK+  KQ+    G+P  P  S L + +     ++I       + P  +KP   GSS+
Sbjct: 131 SSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYENNIIKLVNDKLTYPVFVKPANLGSSV 190

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPK 196
           GI     ++ +   + ++  ++   +L+IEQ ++  E+   V+G+   + T   E+ V  
Sbjct: 191 GISKCNNEEELKSGITEAFQFDR--KLVIEQGINAREIEVAVLGNDYPETTWPGEV-VKD 247

Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256
             FY Y+ KY        +PA +  D+   ++ +A  A +A  C G+ R+DF F     +
Sbjct: 248 VAFYDYKSKYKDGKIRLDIPADLDQDVQMTLRNMALEAFKATDCSGLVRADF-FVTDDNQ 306

Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           ++  E N  PG T  S++P +    G S+ +L+  +++
Sbjct: 307 IYINETNAMPGFTAYSMYPNLWKNMGLSYPDLIAKLID 344


>gi|319399570|gb|EFV87825.1| D-alanine--D-alanine ligase [Staphylococcus epidermidis FRI909]
          Length = 357

 Score =  117 bits (294), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 86/338 (25%), Positives = 163/338 (48%), Gaps = 48/338 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI----------------DVDRSVGL 44
           + ++ GG S+E +VS+ + +   +A++   ++V  I                ++  +  L
Sbjct: 6   ICIVFGGKSAEHDVSILTAQNVLNAIDKERYQVDIIYITNDGEWKKKDNITQEIKNTDEL 65

Query: 45  VLAHLKP----------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
           V+  ++                 D  F +LHG  GEDG +Q + E+L+IPY  +G+LA++
Sbjct: 66  VINDVETGEISQLLSKGSLGRSYDAVFPLLHGPNGEDGTIQGLFEVLDIPYVGNGVLAAS 125

Query: 89  LSMDKMRSKQVVSSCGVPVCP--SILVNRFTMDSQHLI-------SPPYVIKPLKGGSSL 139
            SMDK+  KQ+    G+P  P  S L + +     ++I       + P  +KP   GSS+
Sbjct: 126 SSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYENNIIKLVNDKLTYPVFVKPANLGSSV 185

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPK 196
           GI     ++ +   + ++  ++   +L+IEQ ++  E+   V+G+   + T   E+ V  
Sbjct: 186 GISKCNNEEELKSGIAEAFQFDR--KLVIEQGINAREIEVAVLGNDYPETTWPGEV-VKD 242

Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256
             FY Y+ KY        +PA +  D+   ++ +A  A +A  C G+ R+DF F     +
Sbjct: 243 VAFYDYKSKYKDGKIKLDIPADLDQDVQMTLRNMALEAFKATDCSGLVRADF-FVTDDNQ 301

Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           ++  E N  PG T  S++P +    G S+ +L+  +++
Sbjct: 302 IYINETNAMPGFTAYSMYPNLWKNMGLSYPDLIAKLID 339


>gi|282917432|ref|ZP_06325185.1| D-alanine-D-alanine ligase [Staphylococcus aureus subsp. aureus
           D139]
 gi|283771252|ref|ZP_06344141.1| D-alanine-D-alanine ligase [Staphylococcus aureus subsp. aureus
           H19]
 gi|282318634|gb|EFB48991.1| D-alanine-D-alanine ligase [Staphylococcus aureus subsp. aureus
           D139]
 gi|283459457|gb|EFC06550.1| D-alanine-D-alanine ligase [Staphylococcus aureus subsp. aureus
           H19]
          Length = 356

 Score =  117 bits (294), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 88/300 (29%), Positives = 151/300 (50%), Gaps = 32/300 (10%)

Query: 8   ISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP-DLAFNVLHGNFGEDG 66
           I S  E+ L +G+A          ++SQ+  + S G      +P D  F +LHG  GEDG
Sbjct: 59  IKSTDELHLENGEA---------LEISQLLKESSSG------QPYDAVFPLLHGPNGEDG 103

Query: 67  LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-QHLI- 124
            +Q + E+L++PY  +G+L++A SMDK+  KQ+    G+P  P I   R   +  +H I 
Sbjct: 104 TIQGLFEVLDVPYVGNGVLSAASSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYEHNIL 163

Query: 125 -------SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
                  + P  +KP   GSS+GI     +  +   + ++  ++   +L+IEQ V+  E+
Sbjct: 164 KLVNDKLNYPVFVKPANLGSSVGISKCNNEAELKEGIKEAFQFDR--KLVIEQGVNAREI 221

Query: 178 TCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
              V+G+   + T   E+ V    FY Y+ KY        +PA +  ++   ++ +A  A
Sbjct: 222 EVAVLGNDYPEATWPGEV-VKDVAFYDYKSKYKDGKVQLQIPADLDEEVQLTLRNMALEA 280

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            +A  C G+ R+DF F     +++  E N  PG T  S++P++    G S+ EL+  ++E
Sbjct: 281 FKATDCSGLVRADF-FVTEDNQIYINETNAMPGFTAFSMYPKLWENMGLSYPELITKLIE 339


>gi|222153385|ref|YP_002562562.1| D-alanine--D-alanine ligase [Streptococcus uberis 0140J]
 gi|254767741|sp|B9DUS0|DDL_STRU0 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|222114198|emb|CAR42743.1| D-alanine--D-alanine ligase [Streptococcus uberis 0140J]
          Length = 348

 Score =  117 bits (294), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 97/333 (29%), Positives = 165/333 (49%), Gaps = 45/333 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKV--------------------------- 33
           + +L GG S+EREVS+ S ++   A+    F V                           
Sbjct: 6   IVLLYGGRSAEREVSVLSAESVMRAINYDKFHVKTYFISQAGDFYKTQEFTVQPSESEKL 65

Query: 34  -SQIDVDRSVGLVLAHLKPDLA--FNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
            +   +D S+ +  + +  D A  F +LHG  GEDG +Q  LE+L++PY  + IL+S+++
Sbjct: 66  MTNASLDASLKIKASDIYEDKAVVFPLLHGPMGEDGSIQGFLEILKMPYVGTNILSSSVA 125

Query: 91  MDKMRSKQVVSSCGVP-VCPSILVNRFTM-----DSQHLISPPYVIKPLKGGSSLGIIVI 144
           MDK+ +K+V+ S G+P V  ++ +    +     ++   +S P  +KP   GSS+G   I
Sbjct: 126 MDKITTKRVLESAGIPQVNYTVYIEGNDLEDCITETLETLSFPIFVKPANMGSSVG---I 182

Query: 145 KKDQSIP-LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFY 200
            K +SI  L    + +  +  ++LIEQ V   E+  G++G+  +  T   E+ +    FY
Sbjct: 183 SKAESIEGLREAIALALKYDSRILIEQGVVAREIEVGLLGNTKVASTLPGEV-IKDVAFY 241

Query: 201 SYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260
            Y+ KY     +  +PA I   I  +++  A  A +AIG  G+SR DF F      ++  
Sbjct: 242 DYQAKYIDNKISMAIPATIDEGITSQMRYFAEQAFKAIGACGLSRCDF-FLAEDGNLYLN 300

Query: 261 EINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           E+N  PG T  S++P +    G S+ +L+  +V
Sbjct: 301 ELNTMPGFTQWSMYPLLWDNMGLSYSDLIEELV 333


>gi|544147|sp|P35660|DDL_ANACE RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|142171|gb|AAA22065.1| D-alanine:D-alanine ligase [Anaplasma centrale]
          Length = 205

 Score =  117 bits (294), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 70/182 (38%), Positives = 109/182 (59%), Gaps = 3/182 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S EREVSL+ GK  A AL   G + + +D++R     L  + PDL +N LHG
Sbjct: 15  IAVLCGGSSPEREVSLAGGKRIADALGRLGHRAAVVDLNRESAHQLLAMAPDLVYNALHG 74

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-SILVNRFTMD 119
             GEDG    +L++L + YTHS + AS++ MDK+ +K V+ S G+     S+L     + 
Sbjct: 75  GQGEDGCASGLLDILGLAYTHSRVAASSVGMDKVLTKHVLKSLGIDFPEFSVLTKEEVLS 134

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
           ++ ++  P+VIKP+ GGS++G+  I   +S  LDL   +    G ++L+E+Y+ G E+  
Sbjct: 135 AKEVMPYPFVIKPICGGSTIGVHAIFS-RSEYLDLSVHADALEG-RMLVEEYIPGQEVHT 192

Query: 180 GV 181
            V
Sbjct: 193 AV 194


>gi|27468599|ref|NP_765236.1| D-alanyl-alanine synthetase A [Staphylococcus epidermidis ATCC
           12228]
 gi|38257332|sp|Q8CRP5|DDL_STAES RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|27316146|gb|AAO05280.1|AE016749_226 D-alanine-D-alanine ligase [Staphylococcus epidermidis ATCC 12228]
 gi|329726112|gb|EGG62584.1| D-ala D-ala ligase N-terminal domain protein [Staphylococcus
           epidermidis VCU144]
 gi|329734127|gb|EGG70445.1| D-ala D-ala ligase N-terminal domain protein [Staphylococcus
           epidermidis VCU045]
          Length = 357

 Score =  117 bits (294), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 86/338 (25%), Positives = 163/338 (48%), Gaps = 48/338 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI----------------DVDRSVGL 44
           + ++ GG S+E +VS+ + +   +A++   ++V  I                ++  +  L
Sbjct: 6   ICIVFGGKSAEHDVSILTAQNVLNAIDKERYQVDIIYITNDGEWKKKDNITQEIKNTDEL 65

Query: 45  VLAHLKP----------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
           V+  ++                 D  F +LHG  GEDG +Q + E+L+IPY  +G+LA++
Sbjct: 66  VINDVETGEISQLLSKGSLGKSYDAVFPLLHGPNGEDGTIQGLFEVLDIPYVGNGVLAAS 125

Query: 89  LSMDKMRSKQVVSSCGVPVCP--SILVNRFTMDSQHLI-------SPPYVIKPLKGGSSL 139
            SMDK+  KQ+    G+P  P  S L + +     ++I       + P  +KP   GSS+
Sbjct: 126 SSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYENNIIKLVNDKLTYPVFVKPANLGSSV 185

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPK 196
           GI     ++ +   + ++  ++   +L+IEQ ++  E+   V+G+   + T   E+ V  
Sbjct: 186 GISKCNNEEELKSGITEAFQFDR--KLVIEQGINAREIEVAVLGNDYPETTWPGEV-VKD 242

Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256
             FY Y+ KY        +PA +  D+   ++ +A  A +A  C G+ R+DF F     +
Sbjct: 243 VAFYDYKSKYKDGKIRLDIPADLDQDVQMTLRNMALEAFKATDCSGLVRADF-FVTDDNQ 301

Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           ++  E N  PG T  S++P +    G S+ +L+  +++
Sbjct: 302 IYINETNAMPGFTAYSMYPNLWKNMGLSYPDLIAKLID 339


>gi|242241490|ref|ZP_04795935.1| D-alanyl-alanine synthetase A [Staphylococcus epidermidis W23144]
 gi|242235033|gb|EES37344.1| D-alanyl-alanine synthetase A [Staphylococcus epidermidis W23144]
          Length = 362

 Score =  117 bits (294), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 86/338 (25%), Positives = 163/338 (48%), Gaps = 48/338 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI----------------DVDRSVGL 44
           + ++ GG S+E +VS+ + +   +A++   ++V  I                ++  +  L
Sbjct: 11  ICIVFGGKSAEHDVSILTAQNVLNAIDKERYQVDIIYITNDGEWKKKDNITQEIKNTDEL 70

Query: 45  VLAHLKP----------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
           V+  ++                 D  F +LHG  GEDG +Q + E+L+IPY  +G+LA++
Sbjct: 71  VINDVETGEISQLLSKGSLGRSYDAVFPLLHGPNGEDGTIQGLFEVLDIPYVGNGVLAAS 130

Query: 89  LSMDKMRSKQVVSSCGVPVCP--SILVNRFTMDSQHLI-------SPPYVIKPLKGGSSL 139
            SMDK+  KQ+    G+P  P  S L + +     ++I       + P  +KP   GSS+
Sbjct: 131 SSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYENNIIKLVNDKLTYPVFVKPANLGSSV 190

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPK 196
           GI     ++ +   + ++  ++   +L+IEQ ++  E+   V+G+   + T   E+ V  
Sbjct: 191 GISKCNNEEELKSGIAEAFQFDR--KLVIEQGINAREIEVAVLGNDYPETTWPGEV-VKD 247

Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256
             FY Y+ KY        +PA +  D+   ++ +A  A +A  C G+ R+DF F     +
Sbjct: 248 VAFYDYKSKYKDGKIKLDIPADLDQDVQMTLRNMALEAFKATDCSGLVRADF-FVTDDNQ 306

Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           ++  E N  PG T  S++P +    G S+ +L+  +++
Sbjct: 307 IYINETNAMPGFTAYSMYPNLWKNMGLSYPDLIAKLID 344


>gi|57867614|ref|YP_189255.1| D-alanyl-alanine synthetase A [Staphylococcus epidermidis RP62A]
 gi|282876510|ref|ZP_06285376.1| D-ala D-ala ligase N-terminal domain protein [Staphylococcus
           epidermidis SK135]
 gi|71153333|sp|Q5HMD8|DDL_STAEQ RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|57638272|gb|AAW55060.1| D-alanine--D-alanine ligase [Staphylococcus epidermidis RP62A]
 gi|281294762|gb|EFA87290.1| D-ala D-ala ligase N-terminal domain protein [Staphylococcus
           epidermidis SK135]
 gi|329735636|gb|EGG71919.1| D-ala D-ala ligase N-terminal domain protein [Staphylococcus
           epidermidis VCU028]
          Length = 357

 Score =  117 bits (294), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 86/338 (25%), Positives = 163/338 (48%), Gaps = 48/338 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI----------------DVDRSVGL 44
           + ++ GG S+E +VS+ + +   +A++   ++V  I                ++  +  L
Sbjct: 6   ICIVFGGKSAEHDVSILTAQNVLNAIDKERYQVDIIYITNDGEWKKKDNITQEIKNTDEL 65

Query: 45  VLAHLKP----------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
           V+  ++                 D  F +LHG  GEDG +Q + E+L+IPY  +G+LA++
Sbjct: 66  VINDVETGEISQLLSKGSLGKSYDAVFPLLHGPNGEDGTIQGLFEVLDIPYVGNGVLAAS 125

Query: 89  LSMDKMRSKQVVSSCGVPVCP--SILVNRFTMDSQHLI-------SPPYVIKPLKGGSSL 139
            SMDK+  KQ+    G+P  P  S L + +     ++I       + P  +KP   GSS+
Sbjct: 126 SSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYENNIIKLVNDKLTYPVFVKPANLGSSV 185

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPK 196
           GI     ++ +   + ++  ++   +L+IEQ ++  E+   V+G+   + T   E+ V  
Sbjct: 186 GISKCNNEEELKSGIAEAFQFDR--KLVIEQGINAREIEVAVLGNDYPETTWPGEV-VKD 242

Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256
             FY Y+ KY        +PA +  D+   ++ +A  A +A  C G+ R+DF F     +
Sbjct: 243 VAFYDYKSKYKDGKIRLDIPADLDQDVQMTLRNMALEAFKATDCSGLVRADF-FVTDDNQ 301

Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           ++  E N  PG T  S++P +    G S+ +L+  +++
Sbjct: 302 IYINETNAMPGFTAYSMYPNLWKNMGLSYPDLIAKLID 339


>gi|242371574|ref|ZP_04817148.1| D-alanyl-alanine synthetase A [Staphylococcus epidermidis
           M23864:W1]
 gi|242350726|gb|EES42327.1| D-alanyl-alanine synthetase A [Staphylococcus epidermidis
           M23864:W1]
          Length = 361

 Score =  117 bits (294), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 75/255 (29%), Positives = 134/255 (52%), Gaps = 16/255 (6%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-- 109
           D  F +LHG  GEDG +Q + E+L+IPY  +G+LA++ SMDK+  KQ+    G+P  P  
Sbjct: 94  DAVFPLLHGPNGEDGTIQGLFEVLDIPYVGNGVLAASSSMDKLVMKQLFEHRGLPQLPYI 153

Query: 110 SILVNRFTMDSQHLI-------SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
           S L + +     ++I       + P  +KP   GSS+GI     ++ +   + ++  ++ 
Sbjct: 154 SFLRSEYEKYENNIIKLVNDKLTYPVFVKPANLGSSVGISKCNNEKELKSGIEEAFQFDR 213

Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKI 219
             +L+IEQ ++  E+   V+G+   + T   E+ V    FY Y+ KY        +PA++
Sbjct: 214 --KLVIEQGIEAREIEVAVLGNDYPETTWPGEV-VKDVAFYDYKSKYKDGKVRLQIPAEL 270

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279
             D+   ++ +A  A +A  C G+ R+DF F     +++  E N  PG T  S++P +  
Sbjct: 271 DQDVQMTLRNMALEAFKATDCSGLVRADF-FVTEDNQIYINETNAMPGFTSFSMYPSLWE 329

Query: 280 YAGYSFRELLLWMVE 294
             G S+ +L+  +++
Sbjct: 330 NMGLSYPDLIAKLID 344


>gi|149371693|ref|ZP_01891109.1| D-alanylalanine synthetase [unidentified eubacterium SCB49]
 gi|149355320|gb|EDM43880.1| D-alanylalanine synthetase [unidentified eubacterium SCB49]
          Length = 327

 Score =  117 bits (294), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 93/322 (28%), Positives = 148/322 (45%), Gaps = 34/322 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40
           +AVLMGG SSE  +SL+SG     AL+   + V  I +                    D 
Sbjct: 8   IAVLMGGYSSEVNISLNSGHIVCQALDKNKYNVYPIHILKEGWFYVPKTATNIPIDKGDF 67

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           S   +   + PD  FN +HG  GEDG + A  ELL IP T SG   +ALS +K     V+
Sbjct: 68  SFETLEGTIIPDAVFNTVHGTPGEDGYLAAYFELLGIPQTSSGFYEAALSFNKRDCLSVL 127

Query: 101 SSCGVPVCPSILVNRFT-MDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
            + GV    S   N+   +D   +I+    P  +KP + GSS GI  +   ++    L  
Sbjct: 128 KNFGVKCANSYYHNQGEPIDVNAVITKVGLPCFVKPNRAGSSFGISKVNTIEAFVPAL-- 185

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDAS----LDVTEIAVPKSDFYSYELKYSSLNST 212
             ++    +++IE  + G E++ G           + TEI V ++DF+ YE KY    S 
Sbjct: 186 ERAYKEDSEIIIETALVGTEVSVGAYSHYGNIKVFNPTEI-VSENDFFDYEAKYEG-KSQ 243

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
            + PA+I     ++V+      +  +  +G+ RS+F+        +++EIN  PG++  S
Sbjct: 244 EITPARISESDTQKVKAETKRIYNLLKMKGVCRSEFIIQ--DGVPYFIEINTTPGLSSES 301

Query: 273 IFPEMAAYAGYSFRELLLWMVE 294
           I P+    AG    E    +++
Sbjct: 302 IIPKQVKDAGMDLGEFFGELID 323


>gi|14719503|pdb|1E4E|A Chain A, D-Alanyl-D-Lacate Ligase
          Length = 343

 Score =  117 bits (294), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 84/275 (30%), Positives = 135/275 (49%), Gaps = 12/275 (4%)

Query: 22  CASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81
           C SA+     K+  + V ++    + H+  D+AF+ LHG  GEDG +Q + EL  IP+  
Sbjct: 64  CYSAVLSPDKKMHGLLVKKNHEYEINHV--DVAFSALHGKSGEDGSIQGLFELSGIPFVG 121

Query: 82  SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGI 141
             I +SA+ MDK  +  V  + G+      ++N+         + P  +KP + GSS G 
Sbjct: 122 CDIQSSAICMDKSLTYIVAKNAGIATPAFWVINKDDRPVAATFTYPVFVKPARSGSSFG- 180

Query: 142 IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD-ASLDVTEIAVPKSDFY 200
            V K + +  LD    S+  +  ++LIEQ V G E+ C V+G+ A+L V E+   +  + 
Sbjct: 181 -VKKVNSADELDYAIESARQYDSKILIEQAVSGCEVGCAVLGNSAALVVGEVDQIRLQYG 239

Query: 201 SY------ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
            +      E +  S N+   +PA +  +    +Q      ++ +GCRG++R D       
Sbjct: 240 IFRIHQEVEPEKGSENAVITVPADLSAEERGRIQETVKKIYKTLGCRGLARVDMFLQDNG 299

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           R V   E+N  PG T  S +P M A AG S  EL+
Sbjct: 300 RIVL-NEVNTLPGFTSYSRYPRMMAAAGISLPELI 333


>gi|192292409|ref|YP_001993014.1| D-alanine--D-alanine ligase [Rhodopseudomonas palustris TIE-1]
 gi|192286158|gb|ACF02539.1| D-alanine--D-alanine ligase [Rhodopseudomonas palustris TIE-1]
          Length = 329

 Score =  117 bits (294), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 99/321 (30%), Positives = 143/321 (44%), Gaps = 43/321 (13%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQID---VDRSVGLVLAHLKP-------- 51
           +L GG S ER VS++S +A  SAL DA       D      S   +LAH +P        
Sbjct: 5   ILFGGTSKERLVSVASAQALHSALPDADLWFWNDDDCVHAVSAQALLAHARPFEEAFVPD 64

Query: 52  -------DLAFNV-----------LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDK 93
                  + A +            LHG   E+G +QA+ EL  +P+T SG  AS L+ DK
Sbjct: 65  GEDIGPLETALDRAAAEQRLLVLGLHGGVAENGELQAMCELRRVPFTGSGSAASHLAFDK 124

Query: 94  MRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153
           + +K+  S  GV     I +     ++        + KP   GSS G+  I   Q    D
Sbjct: 125 VAAKRFASIAGVRTVTGIALA--DAEAALEAHGRLIAKPACDGSSYGLFFINAKQ----D 178

Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCGVM--GDASLDV---TEIAVPKSDFYSYELKYSS 208
           L+        +  LIE +V G+E TCGV+   D SL      EI VP    + Y  KY +
Sbjct: 179 LVAVRHAAKTEDYLIEPFVAGVEATCGVLEAEDGSLRALPPIEI-VPADGGFDYTAKYLA 237

Query: 209 LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268
            ++  + P +   +I   +   A  AH+ + CRG SRSDF+         +LE N  PG+
Sbjct: 238 KSTQEICPGRFAPEIASAIMDYAVRAHRVMSCRGYSRSDFIVG--KDGPIFLETNTLPGL 295

Query: 269 TPVSIFPEMAAYAGYSFRELL 289
           T  S++P+     G  F + L
Sbjct: 296 TKASLYPKALNALGIPFVDFL 316


>gi|313837545|gb|EFS75259.1| D-ala D-ala ligase [Propionibacterium acnes HL037PA2]
 gi|314927576|gb|EFS91407.1| D-ala D-ala ligase [Propionibacterium acnes HL044PA1]
 gi|314972484|gb|EFT16581.1| D-ala D-ala ligase [Propionibacterium acnes HL037PA3]
 gi|328907845|gb|EGG27608.1| D-alanine--D-alanine ligase [Propionibacterium sp. P08]
          Length = 365

 Score =  117 bits (293), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 82/264 (31%), Positives = 129/264 (48%), Gaps = 30/264 (11%)

Query: 53  LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
           + F VLHG FGEDG +Q +LE+  + Y   G+ ASA  MDK  +K +++  GV V P ++
Sbjct: 100 VVFPVLHGPFGEDGTIQGLLEMAGVRYVGCGVAASANCMDKHLTKMILAEAGVLVGPYVV 159

Query: 113 V--NRFTMDSQHLISP------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164
           V  + +  D   ++        P  +KP +GGSS+GI  +       L+    ++  H  
Sbjct: 160 VRDHEWREDRDAILKAAAHLEYPLFVKPARGGSSIGISRVTNPDG--LEAAIEAAREHDS 217

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD------------FYSYELKYSSLNST 212
           ++LIEQ + G E+ C V     LD    A P++             FY +E KY S    
Sbjct: 218 KVLIEQGIQGREIECSV-----LDGRHGAAPRASAPGEIVLHDPDGFYDFEAKYLSGGQK 272

Query: 213 HVLPAKIPLD--IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270
             + A+  LD      VQ++A  A + +GC G++R D    P    V+  E N  PG T 
Sbjct: 273 ASVHARANLDDETRIRVQKVATKAFRVLGCEGLARIDTFVTP-DGAVYVNEPNTMPGFTR 331

Query: 271 VSIFPEMAAYAGYSFRELLLWMVE 294
            S FP M   +G ++ +++  ++E
Sbjct: 332 SSGFPLMWQASGMTYAQIVSELIE 355


>gi|297626506|ref|YP_003688269.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)
           [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
 gi|296922271|emb|CBL56843.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)
           [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
          Length = 375

 Score =  117 bits (293), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 89/293 (30%), Positives = 140/293 (47%), Gaps = 25/293 (8%)

Query: 15  SLSSGKACASALEDAG-FKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILE 73
           S+ +    A    DAG   ++ +D DR    + A    D+AF ++HG + EDG VQ  LE
Sbjct: 74  SIGADHPLAELFRDAGGVHLATLDEDR----LTAREPIDVAFPLMHGAYAEDGTVQGKLE 129

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--FTMDSQHLISP----- 126
           +L + Y   G+ +SAL MDK  +  V+ + GVP    + V R  +  D   +++      
Sbjct: 130 MLGLKYVGCGVTSSALGMDKEYTHTVLEAAGVPTAAWVRVGRDEWMRDPDAIVARIGSQL 189

Query: 127 --PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI-ELTCGVMG 183
             P  +KP +GGSS+GI  +    S+   +  +   +   ++L+EQ V G  E+ CG++G
Sbjct: 190 GYPVFVKPARGGSSVGISRVTGPDSLAAAIDAARLVD--PKVLVEQAVVGAREVECGILG 247

Query: 184 DASL-----DVTEIAVPKSD-FYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQ 236
                       EI +   D FY Y  KY       + +PA +   + + VQ LA     
Sbjct: 248 GDGTAPRASHTGEIVMHTEDRFYDYRAKYLPEEQVDLRVPAGLEPQVERRVQELALQCFT 307

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           A+ C G++R D    P   +V   EIN  PG T  S++P M   +G  + EL+
Sbjct: 308 ALDCEGLARVDTFVLP-DGQVLINEINTMPGFTKFSMYPNMWRASGIDYPELI 359


>gi|6634589|emb|CAB64483.1| D-ala,D-ala ligase [Streptococcus pneumoniae]
          Length = 347

 Score =  117 bits (293), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 94/331 (28%), Positives = 159/331 (48%), Gaps = 43/331 (12%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKV----------------------------- 33
           +L GG S+EREVS+ S ++   A+    F V                             
Sbjct: 7   LLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDFIKTQEFSQTPGQEDRLMT 66

Query: 34  -SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
            + ID D+ V     + +  + F VLHG  GEDG VQ  LE+L++PY    IL+S+L+MD
Sbjct: 67  NATIDWDKQVAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLAMD 126

Query: 93  KMRSKQVVSSCGVPVCPSILV------NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           K+ +K+V+ S G+   P + +           + +  ++ P   KP   GSS+GI   K 
Sbjct: 127 KITTKRVLESAGIAQVPYVAIVEGDDLTAKIAEVEEKLTYPVFTKPSNMGSSVGI--SKS 184

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYE 203
           +    L      ++ +  ++L+EQ V+  E+  G++G+  +  T   E+ V    FY Y+
Sbjct: 185 ENQEELRQALKLAFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVAFYDYD 243

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            KY     T  +PAKI  D+   +++ A  A +AIG  G+SR +F +     ++   ++N
Sbjct: 244 AKYIDNKITMDIPAKISDDVVPIMRQNAKTAFRAIGGLGLSRCNFFYTDKG-EISLNKLN 302

Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             PG T  S++P +      S+ +L+  +V+
Sbjct: 303 TMPGFTQWSMYPLLWDNMRISYPDLIERLVD 333


>gi|54114873|dbj|BAD60926.1| D-Ala-D-Lac ligase [Enterococcus raffinosus]
 gi|109240383|dbj|BAE96117.1| D-Ala:D-Lactate ligase [Enterococcus raffinosus]
          Length = 343

 Score =  117 bits (293), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 85/331 (25%), Positives = 155/331 (46%), Gaps = 45/331 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           +AVL GG S E +VS+ S    A+ +    ++   I + +S    L              
Sbjct: 6   IAVLFGGCSEEHDVSVKSAMEVAANINKEKYQPFYIGITKSGAWKLCDKPCRDWENYAGY 65

Query: 47  -AHLKPD--------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
            A + PD                    +   ++HG FGEDG +Q +LEL  IPY    I 
Sbjct: 66  PAVISPDRRIHGLLIQKDGGYESQPVDVVLPMIHGKFGEDGTIQGLLELSGIPYVVCDIQ 125

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145
           +S + MDK  +  VV + G+ V    ++ +        +S P  +KP + GSS G+  + 
Sbjct: 126 SSVICMDKSLAYMVVKNAGIEVPGFRVLQKGDSLEAETLSYPVFVKPARSGSSFGVNKVC 185

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYS 201
           + + +   + ++  ++   ++L+E+ V G E+ C ++G+     + +V +I +    F  
Sbjct: 186 RAEELQAAVTEAGKYD--SKILVEEAVSGSEVGCAILGNGNDLITGEVDQIELKHGFFKI 243

Query: 202 YEL---KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
           ++    +  S N+   +PA +P ++ +++Q  A   ++ +GCRG++R D LF      + 
Sbjct: 244 HQEAQPEKGSENAVIRVPAALPDEVREQIQETAKKIYRVLGCRGLARID-LFLREDGSIV 302

Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
             E+N  PG T  S +P M   AG++  E+L
Sbjct: 303 LNEVNTMPGFTSYSRYPRMMTAAGFTLSEIL 333


>gi|251812201|ref|ZP_04826674.1| D-alanyl-alanine synthetase A [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|251804298|gb|EES56955.1| D-alanyl-alanine synthetase A [Staphylococcus epidermidis
           BCM-HMP0060]
          Length = 362

 Score =  117 bits (293), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 86/338 (25%), Positives = 163/338 (48%), Gaps = 48/338 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI----------------DVDRSVGL 44
           + ++ GG S+E +VS+ + +   +A++   ++V  I                ++  +  L
Sbjct: 11  ICIVFGGKSAEHDVSILTAQNVLNAIDKERYQVDIIYITNDGEWKKKDNITQEIKNTDEL 70

Query: 45  VLAHLKP----------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
           V+  ++                 D  F +LHG  GEDG +Q + E+L+IPY  +G+LA++
Sbjct: 71  VINDVETGEISQLLSKGSLGKSYDAVFPLLHGPNGEDGTIQGLFEVLDIPYVGNGVLAAS 130

Query: 89  LSMDKMRSKQVVSSCGVPVCP--SILVNRFTMDSQHLI-------SPPYVIKPLKGGSSL 139
            SMDK+  KQ+    G+P  P  S L + +     ++I       + P  +KP   GSS+
Sbjct: 131 SSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYENNIIKLVNDKLTYPVFVKPANLGSSV 190

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPK 196
           GI     ++ +   + ++  ++   +L+IEQ ++  E+   V+G+   + T   E+ V  
Sbjct: 191 GISKCNNEEELKSGIAEAFQFDR--KLVIEQGINAREIEVAVLGNDYPETTWPGEV-VKD 247

Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256
             FY Y+ KY        +PA +  D+   ++ +A  A +A  C G+ R+DF F     +
Sbjct: 248 VAFYDYKSKYKDGKIRLDIPADLDQDVQMTLRNMALEAFKATDCSGLVRADF-FVTDDNQ 306

Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           ++  E N  PG T  S++P +    G S+ +L+  +++
Sbjct: 307 IYINETNAMPGFTAYSMYPNLWKNMGLSYPDLIAKLID 344


>gi|116872268|ref|YP_849049.1| D-alanyl-alanine synthetase A [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|123466129|sp|A0AGY4|DDL_LISW6 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|116741146|emb|CAK20266.1| D-alanine--D-alanine ligase [Listeria welshimeri serovar 6b str.
           SLCC5334]
          Length = 370

 Score =  117 bits (293), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 73/259 (28%), Positives = 132/259 (50%), Gaps = 23/259 (8%)

Query: 53  LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
           + F +LHG  GEDG VQ + E+L IPY  +G+LAS+ +MDK+  K++ +  G+P  P++ 
Sbjct: 100 VVFPLLHGPNGEDGTVQGLFEVLNIPYVGNGVLASSAAMDKIVMKKIFADAGIPQVPAVA 159

Query: 113 VNRFTMDSQH---------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
           V      +           +++ P  +KP   GSS+GI   K      L+   + ++ + 
Sbjct: 160 VRLIDWKNYQEEMVSEMEEVLTYPVFVKPANLGSSVGI--SKATNKKELEDAMTEAFLYD 217

Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK--------SDFYSYELKYSSLNSTHVL 215
            ++++EQ V   E+  GV+G+   D    +VP         + FY Y+ KY   N+  ++
Sbjct: 218 RRVVVEQGVVAREIEMGVLGN---DTPVCSVPGEILPEGAVATFYDYKAKYQDNNTALII 274

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275
           P ++  +I ++++  A  A   +   G+ R+DF       ++F  E+N  PG TP S++P
Sbjct: 275 PTEVDPEILEQMKEYAVQAFLGLDASGLVRADFFLTD-DNQLFLNEVNTMPGFTPYSMYP 333

Query: 276 EMAAYAGYSFRELLLWMVE 294
            +    G  +  L+  +V+
Sbjct: 334 LLWQETGLPYSALIERLVD 352


>gi|40021675|gb|AAR37060.1| VanD5 [Enterococcus faecium]
          Length = 343

 Score =  117 bits (293), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 86/337 (25%), Positives = 156/337 (46%), Gaps = 47/337 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +AVL GG S E +VS+ S    A+ +    ++   I + +S    L   KP         
Sbjct: 6   IAVLFGGCSEEHDVSVKSAMEVAANINKEKYQPFYIGITKSGAWKLCD-KPCRDWENYAG 64

Query: 52  ---------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84
                                      D+   ++HG FGEDG +Q +LEL  IPY    I
Sbjct: 65  YPAVISPDRRTHGLLIQKDGGYESQPVDVVLPMIHGKFGEDGTIQGLLELSGIPYVGCDI 124

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
            +S   MDK  +  VV + G+ V    ++ +        +S P  +KP + GSS G+  +
Sbjct: 125 QSSVTCMDKSLAYMVVKNAGIEVPGFRVLQKGDSLKAETLSYPVFVKPARSGSSFGVNKV 184

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL----DVTEIAVPKSDFY 200
            + + +   + ++  ++   ++L+E+ V G E+ C ++G+ +     +V +I +    F 
Sbjct: 185 CRAEELQAAVTEAGKYDC--KILVEEAVSGSEVGCAILGNENALMAGEVDQIELRHGFFK 242

Query: 201 SYEL---KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
            ++    +  S N+   +PA +P ++ + +Q+ A   ++ +GCRG++R D LF      +
Sbjct: 243 IHQEAQPEKGSENAVIRVPAVLPDEVRERIQKTAMKIYRILGCRGLARID-LFLREDGCI 301

Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
              E+N  PG T  S +P M   AG++  E+L  ++E
Sbjct: 302 VLNEVNTMPGFTSYSRYPRMMTAAGFTLTEILDRLIE 338


>gi|27381710|ref|NP_773239.1| D-alanine--D-alanine ligase B [Bradyrhizobium japonicum USDA 110]
 gi|27354879|dbj|BAC51864.1| bll6599 [Bradyrhizobium japonicum USDA 110]
          Length = 330

 Score =  117 bits (293), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 95/329 (28%), Positives = 156/329 (47%), Gaps = 46/329 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV-----LAHLKP---- 51
           + +L GG + ER VS++S +A   AL +A   +   DV+  V +V     L H +P    
Sbjct: 5   ITILFGGSNRERLVSVASAQALHQALPEA--DLWWWDVEDRVHVVQSKQLLEHARPFEDE 62

Query: 52  --------------DLAFNV-------LHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
                         D A          LHG   E+G +Q + E   +P+T SG  +S L+
Sbjct: 63  FKPGTSGIPLVQALDQAKAEDRVLVLGLHGGCAENGELQVMCEARGVPFTGSGSASSHLA 122

Query: 91  MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150
            DK+ +K   +  GV    +I ++   +D+        + KP + GSS G+I +   Q  
Sbjct: 123 FDKIAAKHFAALGGVTPPANIALD--DIDAAFAEYGRLIAKPARDGSSYGLIFVNARQ-- 178

Query: 151 PLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA-----SLDVTEIAVPKSDFYSYELK 205
             DL+   +    ++ +IE Y+ G+E TCGV+        SL   EI +P    + Y  K
Sbjct: 179 --DLVAVRNAAKHEEYVIEPYIAGVEATCGVLERTDGSIVSLPPIEI-IPGEGNFDYAAK 235

Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           Y    +  + P +   +I   +++ A LAH+A+ C G SRSDF+    ++ + +LE N  
Sbjct: 236 YLLSTTQEICPGRFTPEITAALKQQAMLAHRAMSCTGYSRSDFIVS--AKGLVYLETNTL 293

Query: 266 PGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           PG+T  S++P+     G +F + L  +VE
Sbjct: 294 PGLTKSSLYPKALKAEGIAFVDFLRGLVE 322


>gi|146321214|ref|YP_001200925.1| D-alanine-D-alanine ligase and related ATP-grasp enzymes
           [Streptococcus suis 98HAH33]
 gi|145692020|gb|ABP92525.1| D-alanine-D-alanine ligase and related ATP-grasp enzymes
           [Streptococcus suis 98HAH33]
          Length = 283

 Score =  117 bits (293), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 80/250 (32%), Positives = 132/250 (52%), Gaps = 13/250 (5%)

Query: 53  LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
           + F VLHG  GEDG +Q  LE+L +PY  + IL+S+++MDK+ +K+V+ S G+   P + 
Sbjct: 23  VVFPVLHGPMGEDGSIQGFLEVLRMPYVGTNILSSSVAMDKITTKRVLESAGISQVPYVA 82

Query: 113 V------NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQL 166
           V      +    + +  ++ P  +KP   GSS+GI   K +    L      ++ +  ++
Sbjct: 83  VIEGENIDDKIAEIEGKLTYPVFVKPANMGSSVGI--SKAEDLAGLRKALDLAFKYDSRV 140

Query: 167 LIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           L+EQ V+  E+  G++G+A +  T   E+ V    FY Y+ KY     T  +PAKI   I
Sbjct: 141 LVEQGVNAREIEVGLLGNADVKTTLPGEV-VKDVAFYDYDAKYIDNKITMEIPAKIDESI 199

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283
              ++  A  A +AIG  G+SR DF        +F  E+N  PG T  S++P +    G 
Sbjct: 200 MDIMRDNAAKAFRAIGGCGLSRCDFFLTE-DGDIFLNELNTMPGFTQWSMYPLLWDNMGL 258

Query: 284 SFRELLLWMV 293
           ++ +L+  +V
Sbjct: 259 AYPDLIEELV 268


>gi|315281534|ref|ZP_07870142.1| D-alanine--D-alanine ligase [Listeria marthii FSL S4-120]
 gi|313614821|gb|EFR88357.1| D-alanine--D-alanine ligase [Listeria marthii FSL S4-120]
          Length = 370

 Score =  117 bits (293), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 92/352 (26%), Positives = 163/352 (46%), Gaps = 66/352 (18%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGF------------------------------- 31
           +L GG S+E EVSL +  +  +AL+   F                               
Sbjct: 7   LLYGGKSAEHEVSLQTAFSVINALDLEKFEAEPIYITNEGEWIQGPLLTGKLDFVEQLRF 66

Query: 32  ------KVSQIDVDRSVGLVL--AHLKPD----LAFNVLHGNFGEDGLVQAILELLEIPY 79
                 K++  + ++S G  +  A L+ D    + F +LHG  GEDG VQ + E+L IPY
Sbjct: 67  TVADTVKLATTESEKSAGEAISPAVLEADGQETVVFPLLHGPNGEDGTVQGLFEVLNIPY 126

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH---------LISPPYVI 130
             +G+LAS+ +MDK+  K++ +  G+P  P++ V      +           +++ P  +
Sbjct: 127 VGNGVLASSAAMDKIVMKKIFADAGIPQVPAVAVXXXXWKNYQEEMVAEMEEVLTYPVFV 186

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190
           KP   GSS+GI   K      L    + ++ +  ++++EQ V   E+  GV+G+   D  
Sbjct: 187 KPANLGSSVGI--SKATNKKELAEAMTEAFLYDRRVVVEQGVVAREVEMGVLGN---DTP 241

Query: 191 EIAVPK--------SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
             +VP         + FY Y+ KY   N+  ++P ++  +I ++++  A  A   +   G
Sbjct: 242 VCSVPGEILPEGAVATFYDYKAKYQDNNTALIIPTEVEPEILEQMKEYAVQAFLGLDASG 301

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           + R+DF F     ++F  E+N  PG TP S++P +    G  +  L+  +V+
Sbjct: 302 LVRADF-FLTADNQLFLNEVNTMPGFTPYSMYPLLWQETGLPYGALIERLVD 352


>gi|256394928|ref|YP_003116492.1| D-alanine--D-lactate ligase [Catenulispora acidiphila DSM 44928]
 gi|256361154|gb|ACU74651.1| D-alanine/D-alanine ligase [Catenulispora acidiphila DSM 44928]
          Length = 346

 Score =  117 bits (293), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 94/341 (27%), Positives = 151/341 (44%), Gaps = 57/341 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           + ++ GG S E  +S+ S +  A  L+ + ++   I + R     L              
Sbjct: 6   IGIMFGGCSEEHPISVKSAREVAKNLDTSKYEPFYIGITRDGAWRLCDGPEENWENGASR 65

Query: 47  ---------AH------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
                    AH            ++ DL   VLHG  GEDG +Q +LEL  IPY    + 
Sbjct: 66  PAVVSPDRGAHGLLVLDQGRYEAIRLDLVLPVLHGKLGEDGAIQGLLELAGIPYVGCDVQ 125

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRF-TMDSQHLISP-----PYVIKPLKGGSSL 139
            S L +DK  +  V+ + G      I   RF T+     I P     P  +KP + GSS 
Sbjct: 126 TSVLCIDKTLTYLVIQNEG------IATPRFWTLTPDEKIDPNELPYPVFVKPARSGSSF 179

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS----LDVTEIAVP 195
           G+  +     +   + ++  ++   ++LIE+ V G E+ C V+G        +V  +A+ 
Sbjct: 180 GVSKVSGKDELSGAIEEARLYDA--KVLIEEAVVGSEIGCAVLGTGEDLLVGEVDRVALT 237

Query: 196 KSDFYSYEL---KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
              F  ++    +  S N+T ++PA IP      +Q  A L ++A+GCRG+SR DF    
Sbjct: 238 HGFFKIHQESAPETGSENATFIVPADIPAQSRALIQETAKLVYRALGCRGLSRVDFFLKE 297

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
               V   E+N  PG+T  S +P M A AG+   E++  +V
Sbjct: 298 -DGTVVLNEVNTLPGLTSYSRYPRMMAAAGFPMSEVIDRLV 337


>gi|330721446|gb|EGG99500.1| D-alanine--D-alanine ligase [gamma proteobacterium IMCC2047]
          Length = 297

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 90/306 (29%), Positives = 154/306 (50%), Gaps = 22/306 (7%)

Query: 5   MGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL-----VLAHLKPDLAFNVLH 59
           MGG ++ER++SL SGKA  SAL  AG     ID     G       L+    D  FN++H
Sbjct: 1   MGGRAAERDISLVSGKAVLSALLAAGVDAFAIDAFGPEGTDSLIEQLSAQPVDTVFNMVH 60

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM- 118
           G  GE+G +  +L  + +P T S + ASAL+M+K + K +     +P        RF + 
Sbjct: 61  GGEGENGSIPCLLAAMNLPVTGSAMAASALAMNKSQCKFLWQGMALPTA------RFQVL 114

Query: 119 ----DSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
               D Q ++     P ++KP   GSS+G+  + + + +     ++  ++    ++ E +
Sbjct: 115 SAESDWQQVVDDLGLPLMVKPGSEGSSIGMSKVDRVEDLKAAYEEAVQYDQ--TVIAESW 172

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T G++    L   ++   + +FY Y+ KY   ++ +++P  +  +  + +Q +A
Sbjct: 173 ITGGEYTVGIIKGQPLPGIKLETAR-EFYDYQAKYVDDDTQYLIPCGLSPEKEQAMQAIA 231

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A  ++GCRG  R D + D    +   LE+N  PGMT  S+ P  AA  G SF  L+L 
Sbjct: 232 LRAFDSLGCRGWGRVDLMLDEARDEFLVLEVNTIPGMTDHSLVPMAAASIGLSFDALVLQ 291

Query: 292 MVEDAS 297
           ++  A+
Sbjct: 292 ILSTAN 297


>gi|223043955|ref|ZP_03613996.1| D-alanine--D-alanine ligase (D-alanylalanine
           synthetase)(D-Ala-D-Ala ligase) [Staphylococcus capitis
           SK14]
 gi|314934154|ref|ZP_07841515.1| D-alanine--D-alanine ligase [Staphylococcus caprae C87]
 gi|222442670|gb|EEE48774.1| D-alanine--D-alanine ligase (D-alanylalanine
           synthetase)(D-Ala-D-Ala ligase) [Staphylococcus capitis
           SK14]
 gi|313653059|gb|EFS16820.1| D-alanine--D-alanine ligase [Staphylococcus caprae C87]
          Length = 356

 Score =  117 bits (292), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 86/337 (25%), Positives = 162/337 (48%), Gaps = 48/337 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI----------------DVDRSVGL 44
           + ++ GG S+E +VS+ + +   +A+    +++  I                ++  +  L
Sbjct: 6   ICIVFGGKSAEHDVSILTAQNVLNAINKDQYQIDIIYITNDGEWKKKENITDEIKSTDEL 65

Query: 45  VLAHLKP----------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
           VL +++                 D  F +LHG  GEDG +Q + E+L+IPY  +G+LA++
Sbjct: 66  VLNNVEAGEISQLLSKGSTGRSYDAVFPLLHGPNGEDGTIQGLFEVLDIPYVGNGVLAAS 125

Query: 89  LSMDKMRSKQVVSSCGVPVCP--SILVNRFTMDSQHLI-------SPPYVIKPLKGGSSL 139
            SMDK+  KQ+    G+P  P  S L + +     ++I       + P  +KP   GSS+
Sbjct: 126 SSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYENNIIKLVNDKLTYPVFVKPANLGSSV 185

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPK 196
           GI     ++ +   + ++  ++   +L+IEQ ++  E+   V+G+   + T   E+ V  
Sbjct: 186 GISKCNNEEELKSGIEEAFQFDR--KLVIEQGIEAREIEVAVLGNDYPETTWPGEV-VKD 242

Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256
             FY Y+ KY        +PA +  D+   ++ +A  A +A  C G+ R+DF F     +
Sbjct: 243 VAFYDYKSKYKDGKVQLQIPADLDQDVQMTLRNMALEAFKATDCSGLVRADF-FVTEDNQ 301

Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           ++  E N  PG T  S++P +    G S+ +L+  ++
Sbjct: 302 IYINETNAMPGFTSFSMYPSLWENMGLSYPDLIAKLI 338


>gi|308446762|ref|XP_003087258.1| hypothetical protein CRE_28014 [Caenorhabditis remanei]
 gi|308258347|gb|EFP02300.1| hypothetical protein CRE_28014 [Caenorhabditis remanei]
          Length = 328

 Score =  117 bits (292), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 91/311 (29%), Positives = 142/311 (45%), Gaps = 27/311 (8%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL--AHLKP------- 51
           +AV+ GGIS E EVS++S  +   A+   G +     + R    +    H  P       
Sbjct: 9   VAVIGGGISDEHEVSIASAASVVRAVAALGLEAVPFTIARDGRWLTDDGHRLPAHEALAR 68

Query: 52  ----DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV 107
               DLAF VLHG  GEDG +  +L +  IP+  + + A AL MDK  +K +    G+  
Sbjct: 69  IADCDLAFPVLHGVDGEDGAIAGLLRMAGIPFVGAPVRAGALGMDKWATKLIADDLGIAT 128

Query: 108 CPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
               L   +        +    PP V+KP  GGSS G+ V+     +   + Q+ +  +G
Sbjct: 129 SRGALAGGWAAPVGAAFASELRPPLVVKPTTGGSSNGVFVVADRSDLVATVEQARA--YG 186

Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVT-----EIAVPKSDFYSYELKYSSLNSTHVLPAK 218
           + +L+E+YV G E+   V  DA+  +      EI V     +    KY   ++   +PA 
Sbjct: 187 ETVLVEEYVRGREVDIAVFRDAAGGLRVGSTLEIGVVPGGVFDRAEKYDG-SAEFTIPAS 245

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278
           +       +++ A L ++A+GC G++R DF        V   E+N  PGMT  S  P M 
Sbjct: 246 LDPREEGAIRQAAVLLYEALGCAGVARFDFF--ATDDGVVLNEVNTSPGMTEQSQVPRMY 303

Query: 279 AYAGYSFRELL 289
           A  G  +  L+
Sbjct: 304 AAVGLDYAGLV 314


>gi|316933192|ref|YP_004108174.1| D-alanine--D-alanine ligase [Rhodopseudomonas palustris DX-1]
 gi|315600906|gb|ADU43441.1| D-alanine--D-alanine ligase [Rhodopseudomonas palustris DX-1]
          Length = 329

 Score =  117 bits (292), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 98/322 (30%), Positives = 146/322 (45%), Gaps = 45/322 (13%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR----SVGLVLAHLKP------- 51
           +L GG S ER VS++S +A   AL DA       D DR    +   +LAH +P       
Sbjct: 5   ILFGGTSKERLVSVASAQALQRALPDADLWFWNDD-DRVHCVTAQTLLAHARPFEEPFAP 63

Query: 52  --------DLAFNV-----------LHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
                   D+A +            LHG   E+G +QA+ EL  +P+T SG  AS L+ D
Sbjct: 64  DGEMVGPLDIALDRAAAEHRLLVLGLHGGVAENGELQAMCELRRVPFTGSGAAASHLAFD 123

Query: 93  KMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152
           K  +K+  +  GV    S+ +     ++        + KP + GSS G+  I   Q    
Sbjct: 124 KAAAKRFAAIAGVRT--SVGIALADAEAALETHGRLIAKPTRDGSSYGLFFINARQ---- 177

Query: 153 DLLQSSSWNHGDQLLIEQYVDGIELTCGVM--GDAS---LDVTEIAVPKSDFYSYELKYS 207
           DL+        +  LIE +V G+E TCGV+   D S   L   EI VP    + Y  KY 
Sbjct: 178 DLVAVREAAKTEDYLIEPFVAGVEATCGVLEAEDGSLLALPPIEI-VPADGGFDYTAKYL 236

Query: 208 SLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPG 267
           + ++  + P +   ++   +   A  AH+ + CRG SRSDF+         +LE N  PG
Sbjct: 237 AKSTQEICPGRFAPEVAAMIMDYAVRAHRVMSCRGYSRSDFIVG--KDGPIFLETNTLPG 294

Query: 268 MTPVSIFPEMAAYAGYSFRELL 289
           +T  S++P+     G  F + L
Sbjct: 295 LTGASLYPKALKAQGIDFVDFL 316


>gi|311745473|ref|ZP_07719258.1| D-alanine--D-alanine ligase [Algoriphagus sp. PR1]
 gi|126578026|gb|EAZ82246.1| D-alanine--D-alanine ligase [Algoriphagus sp. PR1]
          Length = 328

 Score =  117 bits (292), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 86/324 (26%), Positives = 154/324 (47%), Gaps = 32/324 (9%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40
           +A++ GG + E  +SL S       +    ++V +I +                    D 
Sbjct: 5   IALVTGGYTGESVISLKSAAVVEKTINRELYEVYKILIYPGDWHFLSVSGEKIPVDLNDF 64

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           S+ +    +  D  FN+LHG+ GEDG +    +++ IPYT    L SA++M+K  +K VV
Sbjct: 65  SIRIGDDKITFDGVFNILHGSPGEDGKLAGYFDMIGIPYTTCDQLTSAITMNKGYTKAVV 124

Query: 101 SSCG-VPVCPSI-LVNRFTMDS---QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
                + +  SI L +  +++    Q  ++ P  IKP  GGSS+G+  +K    +   L 
Sbjct: 125 DDIEELHIAKSIQLFDNSSLNQNRIQEELTLPLFIKPNNGGSSIGMSKVKTWDELGEAL- 183

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVM-GDASLDV---TEIAVPKSDFYSYELKYSSLNS 211
              +++   Q+L+E++V G E + GV  G   + V   TEI V   +F+ +E KY +  +
Sbjct: 184 -DKAFDEDSQVLVEEFVSGREFSIGVFKGKGQVTVLPATEI-VSSKEFFDFEAKYVAGVT 241

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271
             + P ++  +    V R+A   ++ + C+G  R D+     S K +++EIN  PG T  
Sbjct: 242 NEITPGRMNEEEISRVNRIAAKIYEKLNCKGSVRIDYFLQEGSGKFYFIEINTVPGQTET 301

Query: 272 SIFPEMAAYAGYSFRELLLWMVED 295
           S+  +     G   R+    ++E+
Sbjct: 302 SLISQQVRAYGMEVRDFYTQLIEE 325


>gi|20808895|ref|NP_624066.1| D-alanine-D-alanine ligase and related ATP-grasp enzyme
           [Thermoanaerobacter tengcongensis MB4]
 gi|39930907|sp|Q8R778|DDL_THETN RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|20517553|gb|AAM25670.1| D-alanine-D-alanine ligase and related ATP-grasp enzymes
           [Thermoanaerobacter tengcongensis MB4]
          Length = 389

 Score =  117 bits (292), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 80/264 (30%), Positives = 135/264 (51%), Gaps = 25/264 (9%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+ F   HG  GEDG +Q + +L  IPY  SG++ SA  MDK+  K +  +  +P+   +
Sbjct: 103 DVIFPAFHGTHGEDGTMQGLFQLANIPYVGSGVVGSATGMDKVIMKDIFKANNLPIVNYL 162

Query: 112 --LVNRFTMDSQHL-------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
             L   +  + + +       +  P  +KP   GSS+GI   K    +  D ++ + + +
Sbjct: 163 WFLRKEYEKNKEAMLDLIESKLKYPMFVKPANLGSSIGISKAKNRDEL-FDAIEIAIY-Y 220

Query: 163 GDQLLIEQYV-DGIELTCGVMG---DASLDVTEIAVPKSDFYSYELKY------SSLNST 212
             ++++E+ V D +E+ C VMG   D  + + E+ VP  +F SY+ KY         ++T
Sbjct: 221 DRKIIVEEAVKDPMEVNCSVMGIDRDLEISLCEMPVPWEEFLSYQDKYMRKEKGGKGSTT 280

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
             +PA IP +  KE+Q LA    Q + C G++R DFL +  + KV+  EIN  PG     
Sbjct: 281 RQIPAPIPEEKTKEIQELAKKVFQILDCSGLARIDFLLEKETMKVYVNEINTIPGSFAFY 340

Query: 273 IFPEMAAYAGYSFRELLLWMVEDA 296
           ++  +    G SF +L+  ++E A
Sbjct: 341 LWKPL----GISFEKLIDRLIEYA 360


>gi|254479318|ref|ZP_05092657.1| putative D-ala D-ala ligase N-terminal domain protein
           [Carboxydibrachium pacificum DSM 12653]
 gi|214034738|gb|EEB75473.1| putative D-ala D-ala ligase N-terminal domain protein
           [Carboxydibrachium pacificum DSM 12653]
          Length = 383

 Score =  116 bits (291), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 82/264 (31%), Positives = 137/264 (51%), Gaps = 25/264 (9%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+ F   HG  GEDG +Q + +L  IPY  SG++ SA  MDK+  K +  +  +P+   +
Sbjct: 97  DVIFPAFHGTHGEDGTMQGLFQLANIPYVGSGVVGSATGMDKVIMKDIFKANNLPIVNYL 156

Query: 112 --LVNRFTMDSQHL-------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
             L   +  + + +       +  P  +KP   GSS+GI   K    +  D ++ + + +
Sbjct: 157 WFLRKEYEKNKEAMLDLIESKLKYPMFVKPANLGSSIGISKAKNRDEL-FDAIEIAIY-Y 214

Query: 163 GDQLLIEQYV-DGIELTCGVMG-DASLDVT--EIAVPKSDFYSYELKY------SSLNST 212
             ++++E+ V D +E+ C VMG D  L+V+  E+ VP  +F SY+ KY         ++T
Sbjct: 215 DRKIIVEEAVKDPMEVNCSVMGIDRDLEVSLCEMPVPWEEFLSYQDKYMRKEKGGKGSTT 274

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
             +PA IP +  KE+Q LA    Q + C G++R DFL +  + KV+  EIN  PG     
Sbjct: 275 RQIPAPIPEEKTKEIQELAKKVFQILDCSGLARIDFLLEKETMKVYVNEINTIPGSFAFY 334

Query: 273 IFPEMAAYAGYSFRELLLWMVEDA 296
           ++  +    G SF +L+  ++E A
Sbjct: 335 LWKPL----GISFEKLIDRLIEYA 354


>gi|16799922|ref|NP_470190.1| D-alanyl-alanine synthetase A [Listeria innocua Clip11262]
 gi|22095561|sp|Q92DG5|DDL_LISIN RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|16413299|emb|CAC96080.1| D-alanine--D-alanine ligase [Listeria innocua Clip11262]
          Length = 370

 Score =  116 bits (291), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 73/259 (28%), Positives = 131/259 (50%), Gaps = 23/259 (8%)

Query: 53  LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
           + F +LHG  GEDG VQ + E+L IPY  +G+LAS+ +MDK+  K++ +  G+P  P++ 
Sbjct: 100 VVFPLLHGPNGEDGTVQGLFEVLNIPYVGNGVLASSAAMDKIVMKKIFADAGIPQVPAVA 159

Query: 113 VNRFTMDSQH---------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
           V      +           +++ P  +KP   GSS+GI   K      L    + ++ + 
Sbjct: 160 VRLIDWKNYQEEMVTEMEEVLTYPVFVKPANLGSSVGI--SKATNKTELIEAMTEAFLYD 217

Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK--------SDFYSYELKYSSLNSTHVL 215
            ++++EQ V   E+  GV+G+   D    +VP         + FY Y+ KY   N+  ++
Sbjct: 218 RRVVVEQGVVAREIEMGVLGN---DTPVCSVPGEILPEGAVAKFYDYKAKYQDNNTALII 274

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275
           P ++  +I ++++  A  A   +   G+ R+DF       ++F  E+N  PG TP S++P
Sbjct: 275 PTEVEPEILEQMKEYAVQAFLGLDASGLVRADFFLTE-DNQLFLNEVNTMPGFTPYSMYP 333

Query: 276 EMAAYAGYSFRELLLWMVE 294
            +    G  +  L+  +V+
Sbjct: 334 LLWQETGLPYGALIERLVD 352


>gi|313624508|gb|EFR94508.1| D-alanine--D-alanine ligase [Listeria innocua FSL J1-023]
          Length = 370

 Score =  116 bits (291), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 73/259 (28%), Positives = 131/259 (50%), Gaps = 23/259 (8%)

Query: 53  LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
           + F +LHG  GEDG VQ + E+L IPY  +G+LAS+ +MDK+  K++ +  G+P  P++ 
Sbjct: 100 VVFPLLHGPNGEDGTVQGLFEVLNIPYVGNGVLASSAAMDKIVMKKIFADAGIPQVPAVA 159

Query: 113 VNRFTMDSQH---------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
           V      +           +++ P  +KP   GSS+GI   K      L    + ++ + 
Sbjct: 160 VRLIDWKNYQEEMVTEMEEVLTYPVFVKPANLGSSVGI--SKATNKTELIEAMTEAFLYD 217

Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK--------SDFYSYELKYSSLNSTHVL 215
            ++++EQ V   E+  GV+G+   D    +VP         + FY Y+ KY   N+  ++
Sbjct: 218 RRVVVEQGVVAREIEMGVLGN---DTPVCSVPGEILPEGAVAKFYDYKAKYQDNNTALII 274

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275
           P ++  +I ++++  A  A   +   G+ R+DF       ++F  E+N  PG TP S++P
Sbjct: 275 PTEVEPEILEQMKEYAVQAFLGLDASGLVRADFFLTE-DNQLFLNEVNTMPGFTPYSMYP 333

Query: 276 EMAAYAGYSFRELLLWMVE 294
            +    G  +  L+  +V+
Sbjct: 334 LLWQETGLPYGALIERLVD 352


>gi|260663306|ref|ZP_05864197.1| D-alanine-D-alanine ligase [Lactobacillus fermentum 28-3-CHN]
 gi|260552158|gb|EEX25210.1| D-alanine-D-alanine ligase [Lactobacillus fermentum 28-3-CHN]
          Length = 377

 Score =  116 bits (291), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 78/256 (30%), Positives = 139/256 (54%), Gaps = 17/256 (6%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D  + V+HGN GEDG VQ +  LL+ PY  SGI +SA+S DK  +K++++  G+     +
Sbjct: 96  DFFYPVIHGNLGEDGTVQGLFRLLKKPYIGSGIASSAMSFDKDLTKRILNQAGIRNTKYL 155

Query: 112 LVNRFTMDS------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
           LV     D       +  +     +KP K GSS+GI  +  ++     +  + ++++  +
Sbjct: 156 LVTPQNKDQYSWSRIKEELGDLVFVKPAKQGSSVGIHKVDTEEEYETAMKDAFTYDY--K 213

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTE---IAVPKSD-FYSYELKYSSLNS-THVLPAKI 219
           +L+E  +    E+   ++G+ +   ++   I VP+ D FY YE K+   +     LP  +
Sbjct: 214 VLVEAGIKNPREIEISILGNENPIASKLGGIRVPEGDEFYDYENKFVDASGVVFDLPVIV 273

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL-EINVQPGMTPVSIFPEMA 278
             D+ KE+  +A  A++A+G +G++R DFL D     V +L E N  PG T +S++P+M 
Sbjct: 274 DDDLAKEITDMALKAYEALGMKGMARIDFLVD--EDGVPYLGEPNTLPGFTNISLYPQMW 331

Query: 279 AYAGYSFRELLLWMVE 294
             +G S+ EL+  +++
Sbjct: 332 NISGISYSELIDRLIQ 347


>gi|29468046|gb|AAN60573.1| D-alanine:D-lactate ligase [Enterococcus faecium]
          Length = 342

 Score =  116 bits (291), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 77/245 (31%), Positives = 124/245 (50%), Gaps = 10/245 (4%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+AF VLHG  GEDG +Q +  L  IPY    I +SA+ MDK  +  +  + G+ V    
Sbjct: 91  DVAFPVLHGKCGEDGAIQGLFVLSGIPYVGCDIQSSAVCMDKSLAYILTKNAGIAVPEFQ 150

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
           ++++        ++ P  +KP + GSS G  V K + +  L+    ++  +  ++LIEQ 
Sbjct: 151 MIDKGDKPEAGALTYPVFVKPARSGSSFG--VTKVNGTEELNAAIEAAGQYDGKILIEQA 208

Query: 172 VDGIELTCGVMGDAS----LDVTEIAVPKSDFYSY---ELKYSSLNSTHVLPAKIPLDIY 224
           + G E+ C VMG+       +V +I +    F  +   E +  S N+   +PA IP++  
Sbjct: 209 ISGCEVGCAVMGNEDDLIVGEVDQIRLSHGIFRIHQENEPEKGSENAMITVPADIPVEER 268

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
             VQ  A   ++ +GCRG++R D LF      +   E+N  PG T  S +P M A AG +
Sbjct: 269 NRVQETAKKVYRVLGCRGLARVD-LFLQEDGGIVLNEVNTLPGFTSYSRYPRMVAAAGIT 327

Query: 285 FRELL 289
              L+
Sbjct: 328 LPALI 332


>gi|21910620|ref|NP_664888.1| D-alanyl-alanine synthetase A [Streptococcus pyogenes MGAS315]
 gi|21904822|gb|AAM79691.1| putative D-ala,D-ala ligase [Streptococcus pyogenes MGAS315]
          Length = 321

 Score =  116 bits (291), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 79/254 (31%), Positives = 133/254 (52%), Gaps = 21/254 (8%)

Query: 53  LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
           + F VLHG  GEDG +Q  LE+L +PY  + +++S+++MDK+ +K+V+ S G+P     +
Sbjct: 61  VVFPVLHGPMGEDGSIQGFLEVLRMPYIGTNVMSSSIAMDKITTKRVLESIGIPQVAYTV 120

Query: 113 VNRFTMDSQHL----------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
                +D Q L          ++ P  +KP   GSS+GI   K    + L      +  +
Sbjct: 121 Y----IDGQDLEACLVETLARLTFPIFVKPANMGSSVGI--SKAQTKVELRKAIQLALTY 174

Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKI 219
             ++LIEQ V   E+  G++G+  +  T   E+ +   DFY Y+ KY     T  +PA +
Sbjct: 175 DSRVLIEQGVVAREIEVGLLGNDKVKSTLPGEV-IKDVDFYDYQAKYVDNKITMAIPADV 233

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279
              I  E++  A +A +A+G  G+SR DF F     +V+  E+N  PG T  S++P +  
Sbjct: 234 DQSIVTEMRSYAEVAFKALGGCGLSRCDF-FLTQDGQVYLNELNTMPGFTQWSMYPLLWE 292

Query: 280 YAGYSFRELLLWMV 293
             G ++ +L+  +V
Sbjct: 293 NMGLAYPDLIEELV 306


>gi|184154927|ref|YP_001843267.1| D-alanyl-alanine synthetase A [Lactobacillus fermentum IFO 3956]
 gi|229485961|sp|B2GAV5|DDL_LACF3 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|183226271|dbj|BAG26787.1| D-alanine-D-alanine ligase [Lactobacillus fermentum IFO 3956]
          Length = 377

 Score =  116 bits (291), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 78/256 (30%), Positives = 139/256 (54%), Gaps = 17/256 (6%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D  + V+HGN GEDG VQ +  LL+ PY  SGI +SA+S DK  +K++++  G+     +
Sbjct: 96  DFFYPVIHGNLGEDGTVQGLFRLLKKPYIGSGIASSAMSFDKDLTKRILNQAGIRNTKYL 155

Query: 112 LVNRFTMDS------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
           LV     D       +  +     +KP K GSS+GI  +  ++     +  + ++++  +
Sbjct: 156 LVTPQNKDQYSWSRIKEELGDLVFVKPAKQGSSVGIHKVDTEEEYETAMKDAFTYDY--K 213

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTE---IAVPKSD-FYSYELKYSSLNS-THVLPAKI 219
           +L+E  +    E+   ++G+ +   ++   I VP+ D FY YE K+   +     LP  +
Sbjct: 214 VLVEAGIKNPREIEISILGNENPIASKLGGIRVPEGDEFYDYENKFVDASGVVFDLPVIV 273

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL-EINVQPGMTPVSIFPEMA 278
             D+ KE+  +A  A++A+G +G++R DFL D     V +L E N  PG T +S++P+M 
Sbjct: 274 DDDLAKEITDMALKAYEALGMKGMARIDFLVD--EDGVPYLGEPNTLPGFTNISLYPQMW 331

Query: 279 AYAGYSFRELLLWMVE 294
             +G S+ EL+  +++
Sbjct: 332 NISGISYSELIDRLIQ 347


>gi|291533191|emb|CBL06304.1| D-alanine--D-alanine ligase [Megamonas hypermegale ART12/1]
          Length = 232

 Score =  116 bits (291), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 72/233 (30%), Positives = 128/233 (54%), Gaps = 15/233 (6%)

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI-------SP 126
           ++++PYT   +L+SA++MDK+ SK +  S G+   P+ L+ R T   ++L+       S 
Sbjct: 1   MIDMPYTSCSVLSSAITMDKVASKHLFRSTGIST-PNCLIYRKTDTDRNLVEEIAGKFSM 59

Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA- 185
           P V+K    GSS+G+ +++K + +   +   + + + D +L+E+++ G EL+  V G+  
Sbjct: 60  PVVVKAASQGSSIGVEIVEKKEDLQKAI--DACFEYDDAILVEEFIKGRELSIPVYGNKE 117

Query: 186 --SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
             +L + EI    S  Y Y+ KY+   S H++PA +  ++  ++Q+L   A     CRG+
Sbjct: 118 KKALPIIEITT-NSGRYDYKSKYTKGESFHIIPAPLSEELTAKIQKLCIDACTVADCRGV 176

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            R D +        + LEIN  PGMT  S+ P+ A + G SF EL   +++ A
Sbjct: 177 VRVDVMLSE-ENIPYVLEINSVPGMTQTSLVPDAANHVGISFGELCEMILQMA 228


>gi|227514491|ref|ZP_03944540.1| D-alanine--D-alanine ligase [Lactobacillus fermentum ATCC 14931]
 gi|227087177|gb|EEI22489.1| D-alanine--D-alanine ligase [Lactobacillus fermentum ATCC 14931]
 gi|299782964|gb|ADJ40962.1| D-alanine--D-alanine ligase [Lactobacillus fermentum CECT 5716]
          Length = 377

 Score =  116 bits (291), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 78/256 (30%), Positives = 139/256 (54%), Gaps = 17/256 (6%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D  + V+HGN GEDG VQ +  LL+ PY  SGI +SA+S DK  +K++++  G+     +
Sbjct: 96  DFFYPVIHGNLGEDGTVQGLFRLLKKPYIGSGIASSAMSFDKDLTKRILNQAGIRNTKYL 155

Query: 112 LVNRFTMDS------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
           LV     D       +  +     +KP K GSS+GI  +  ++     +  + ++++  +
Sbjct: 156 LVTPQNKDQYSWSRIKEELGDLVFVKPAKQGSSVGIHKVDTEEEYETAMKDAFTYDY--K 213

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTE---IAVPKSD-FYSYELKYSSLNS-THVLPAKI 219
           +L+E  +    E+   ++G+ +   ++   I VP+ D FY YE K+   +     LP  +
Sbjct: 214 VLVEAGIKNPREIEISILGNENPIASKLGGIRVPEGDEFYDYENKFVDASGVVFDLPVIV 273

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL-EINVQPGMTPVSIFPEMA 278
             D+ KE+  +A  A++A+G +G++R DFL D     V +L E N  PG T +S++P+M 
Sbjct: 274 DDDLAKEITDMALKAYEALGMKGMARIDFLVD--EDGVPYLGEPNTLPGFTNISLYPQMW 331

Query: 279 AYAGYSFRELLLWMVE 294
             +G S+ EL+  +++
Sbjct: 332 NISGISYSELIDRLIQ 347


>gi|56123448|gb|AAV74563.1| D-alanine:D-lactate ligase [Clostridium sp. MLG480]
          Length = 342

 Score =  116 bits (291), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 77/245 (31%), Positives = 123/245 (50%), Gaps = 10/245 (4%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+AF VLHG  GEDG +Q +  L  IPY    I +SA  MDK  +  +  + G+ V    
Sbjct: 91  DVAFPVLHGKCGEDGAIQGLFVLSGIPYVGCDIQSSAACMDKSLAYILTKNAGIAVPEFQ 150

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
           ++ +        ++ P  +KP + GSS G  V K + +  L+    ++  +  ++LIEQ 
Sbjct: 151 VIEKGGKPEARTLTYPVFVKPARSGSSFG--VTKVNSTEELNAAIEAAGQYDGKILIEQA 208

Query: 172 VDGIELTCGVMGDAS----LDVTEIAVPKSDFYSY---ELKYSSLNSTHVLPAKIPLDIY 224
           + G E+ C VMG+       +V +I +    F  +   E +  S N+  ++PA IP++  
Sbjct: 209 ISGCEVGCAVMGNEDDLIVGEVDQIRLSHGIFRIHQENEPEKGSENAMIIVPADIPVEER 268

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
             VQ  A   ++ +GCRG++R D LF      +   E+N  PG T  S +P M A AG +
Sbjct: 269 NRVQETAKKVYRVLGCRGLARVD-LFLQEDGGIVLNEVNTLPGFTSYSRYPRMMAAAGIT 327

Query: 285 FRELL 289
              L+
Sbjct: 328 LPALI 332


>gi|56123462|gb|AAV74570.1| D-alanine:D-lactate ligase [Clostridium sp. MLG101]
          Length = 343

 Score =  116 bits (291), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 77/245 (31%), Positives = 124/245 (50%), Gaps = 10/245 (4%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+AF VLHG  GEDG +Q +  L  IPY    I +SA+ MDK  +  +  + G+ V    
Sbjct: 91  DVAFPVLHGKCGEDGAIQGLFVLSGIPYVGCDIQSSAVCMDKSLAYILTKNAGIAVPEFQ 150

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
           ++++        ++ P  +KP + GSS G  V K + +  L+    ++  +  ++LIEQ 
Sbjct: 151 MIDKGDKPEAGALTYPVFVKPARSGSSFG--VTKVNGTEELNAAIEAAGQYDGKILIEQA 208

Query: 172 VDGIELTCGVMGDAS----LDVTEIAVPKSDFYSY---ELKYSSLNSTHVLPAKIPLDIY 224
           + G E+ C VMG+       +V +I +    F  +   E +  S N+   +PA IP++  
Sbjct: 209 ISGCEVGCAVMGNEDDLIVGEVDQIRLSHGIFRIHQENEPEKGSENAMITVPADIPVEER 268

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
             VQ  A   ++ +GCRG++R D LF      +   E+N  PG T  S +P M A AG +
Sbjct: 269 NRVQETAKKVYRVLGCRGLARVD-LFLQEDGGIVLNEVNTLPGFTSYSRYPRMVAAAGIT 327

Query: 285 FRELL 289
              L+
Sbjct: 328 LPALI 332


>gi|295695685|ref|YP_003588923.1| D-alanine/D-alanine ligase [Bacillus tusciae DSM 2912]
 gi|295411287|gb|ADG05779.1| D-alanine/D-alanine ligase [Bacillus tusciae DSM 2912]
          Length = 397

 Score =  116 bits (291), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 88/264 (33%), Positives = 131/264 (49%), Gaps = 25/264 (9%)

Query: 51  PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
           PD+A    HG +GEDG +Q +LE+  IPYT  G+L SA+ MDK+  K V  + G+PV   
Sbjct: 104 PDVAILATHGTYGEDGCLQGLLEIAGIPYTGPGVLGSAVGMDKILMKDVFRAQGIPVVNY 163

Query: 111 ILVNRFTMDS---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN 161
           I ++R              +  +  P  +KP   GSS+GI   +    +   +  ++ ++
Sbjct: 164 IWIHRDEWHEHPDEVADRVERELQYPVFVKPSNLGSSVGIGRAEDRDGLFHAMDVAAGYD 223

Query: 162 HGDQLLIEQ-YVDGIELTCGVMGDAS---LDVTEIAVPKSDFYSYELKYSSLNST----- 212
              +LLIEQ  V   E+ C V+ D     + + E  V    F SYE KY   N T     
Sbjct: 224 R--RLLIEQGVVSPREINCSVLADGQDLRVSLCEEPVSWEAFLSYEDKYIRGNFTKGQTG 281

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
             +PA +P  + + VQ LA  A +AI  RG++R DFL  P    ++  EIN  PG     
Sbjct: 282 RRIPADLPDGVTEAVQELARRAFRAIQARGVARVDFLLSP-DGSIYVNEINTIPGSLSFY 340

Query: 273 IFPEMAAYAGYSFRELLLWMVEDA 296
           ++      +G SF +LL  ++EDA
Sbjct: 341 LWEP----SGVSFPDLLDKLIEDA 360


>gi|55709831|gb|AAV58816.1| vanB [Clostridium sp. CCRI-9842]
 gi|56123450|gb|AAV74564.1| D-alanine:D-lactate ligase [Clostridium sp. MLG080-1]
 gi|56123452|gb|AAV74565.1| D-alanine:D-lactate ligase [Ruminococcus sp. MLG080-3]
          Length = 342

 Score =  116 bits (291), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 77/245 (31%), Positives = 123/245 (50%), Gaps = 10/245 (4%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+AF VLHG  GEDG +Q +  L  IPY    I +SA  MDK  +  +  + G+ V    
Sbjct: 91  DVAFPVLHGKCGEDGAIQGLFVLSGIPYVGCDIQSSAACMDKSLAYILTKNAGIAVPEFQ 150

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
           ++++        ++ P  +KP + GSS G  V K + +  L+    ++  +  ++LIEQ 
Sbjct: 151 MIDKGDKPEAGALTYPVFVKPARSGSSFG--VTKVNGTEELNAAIEAAGQYDGKILIEQA 208

Query: 172 VDGIELTCGVMGDAS----LDVTEIAVPKSDFYSY---ELKYSSLNSTHVLPAKIPLDIY 224
           + G E+ C VMG+       +V +I +    F  +   E +  S N+   +PA IP++  
Sbjct: 209 ISGCEVGCAVMGNEDDLIVGEVDQIRLSHGIFRIHQENEPEKGSENAMITVPADIPVEER 268

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
             VQ  A   ++ +GCRG++R D LF      +   E+N  PG T  S +P M A AG +
Sbjct: 269 NRVQETAKKVYRVLGCRGLARVD-LFLQEDGGIVLNEVNTMPGFTSYSRYPRMVAAAGIT 327

Query: 285 FRELL 289
              L+
Sbjct: 328 LPALI 332


>gi|56123458|gb|AAV74568.1| D-alanine:D-lactate ligase [Clostridium sp. MLG055]
          Length = 342

 Score =  116 bits (290), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 77/245 (31%), Positives = 123/245 (50%), Gaps = 10/245 (4%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+AF VLHG  GEDG +Q +  L  IPY    I +SA  MDK  +  +  + G+ V    
Sbjct: 91  DVAFPVLHGKCGEDGAIQGLFVLSGIPYVGCDIQSSAACMDKSLAYILTKNAGIAVPEFQ 150

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
           ++++        ++ P  +KP + GSS G  V K + +  L+    ++  +  ++LIEQ 
Sbjct: 151 IIDKGDKPEAGALTYPVFVKPARSGSSFG--VTKVNGTEELNAAIEAAGQYDGKILIEQA 208

Query: 172 VDGIELTCGVMGDAS----LDVTEIAVPKSDFYSY---ELKYSSLNSTHVLPAKIPLDIY 224
           + G E+ C VMG+       +V +I +    F  +   E +  S N+   +PA IP++  
Sbjct: 209 ISGCEVGCAVMGNEDDLIVGEVDQIRLSHGIFRIHQENEPEKGSENAMITVPADIPVEER 268

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
             VQ  A   ++ +GCRG++R D LF      +   E+N  PG T  S +P M A AG +
Sbjct: 269 NRVQETAKKVYRVLGCRGLARVD-LFLQEDGGIVLNEVNTMPGFTSYSRYPRMVAAAGIT 327

Query: 285 FRELL 289
              L+
Sbjct: 328 LPALI 332


>gi|325268628|ref|ZP_08135258.1| D-alanine-D-alanine ligase [Prevotella multiformis DSM 16608]
 gi|324989156|gb|EGC21109.1| D-alanine-D-alanine ligase [Prevotella multiformis DSM 16608]
          Length = 332

 Score =  116 bits (290), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 92/327 (28%), Positives = 152/327 (46%), Gaps = 37/327 (11%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---DRSVGLVLAHLKP------ 51
           +A++ GG SSE +VS+ SG+   S  +   + +  +DV   D  V L    L P      
Sbjct: 8   IAIVCGGDSSEHDVSMRSGQGLYSFFDKERYNIYIVDVKGIDWHVELPDRSLAPIDKNDF 67

Query: 52  -----------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
                      D A+  +HG  GE+G++Q   +L+ +PY+ SG+L  A++ DK      +
Sbjct: 68  SFVENGRRREFDYAYITIHGQPGENGVMQGYFDLIHLPYSTSGVLVEAMTFDKFVLNNYL 127

Query: 101 SSCGVPVCPSILVNR----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKK-DQSIPLDLL 155
              GV V  SIL+ R       + +  +  P  +KP   GSS G+  +K  DQ  P   +
Sbjct: 128 RGFGVKVADSILLRRGEPYNEAEIEKRLGMPCFVKPAADGSSFGVSKVKNADQLAPALRV 187

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV----TEIAVPKSDFYSYELKYSSLNS 211
              ++   ++++IE ++DG+E++ GV       V    TE+ V  ++F+ Y  KY+    
Sbjct: 188 ---AFMESNEVMIEGFMDGMEISQGVYKTKEKAVVFPATEV-VTSNEFFDYNAKYNG-QV 242

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK---VFWLEINVQPGM 268
             + PA++  +    V       +  +   GI R D++          V  LEIN  PGM
Sbjct: 243 QEITPARMSPETAARVAAETSRIYDILHANGIIRIDYIISKDKDGEDVVNMLEINTTPGM 302

Query: 269 TPVSIFPEMAAYAGYSFRELLLWMVED 295
           T  S  P+    AG   +E+L  +VE+
Sbjct: 303 TATSFIPQQVRAAGLDIKEVLSEIVEN 329


>gi|302335980|ref|YP_003801187.1| D-alanine/D-alanine ligase [Olsenella uli DSM 7084]
 gi|301319820|gb|ADK68307.1| D-alanine/D-alanine ligase [Olsenella uli DSM 7084]
          Length = 359

 Score =  116 bits (290), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 82/263 (31%), Positives = 133/263 (50%), Gaps = 21/263 (7%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV--PVC- 108
           D+ F VLHG  GEDG+ Q +LE   +PY   G+L+SAL  DK  + ++V++ G+  P C 
Sbjct: 96  DVVFPVLHGQGGEDGVTQGLLESCRLPYVGCGVLSSALCTDKDAAHRIVAAAGIRSPRCE 155

Query: 109 ---PSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
              P     R   +       P  +KP +GGSS G+  ++  +   LD     ++ + ++
Sbjct: 156 VVHPGDGATRIA-EVAAACGYPLFVKPARGGSSYGVSKVEGPEQ--LDEALGLAFGYDEK 212

Query: 166 LLIEQYVDGIELTCGVMGDASLD-----VTEIAVPKSDFY------SYELKYSSLNSTHV 214
           + +E+ + G E+ C +MG A+ +     V E  V    F+      S     S+ NS+  
Sbjct: 213 VAVEEAIVGTEVGCAIMGGAAGELAMGLVDETVVSDGGFFHIHQDHSEGADASTRNSSTR 272

Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274
            PA +P ++ + V+       +A+GC G++R D LF     +V + E+N  PG+T  S F
Sbjct: 273 CPALLPPEVMERVRETGTAVWRALGCSGLARVD-LFVTERGEVVFNEVNTMPGLTSYSRF 331

Query: 275 PEMAAYAGYSFRELLLWMVEDAS 297
           P M A AG    E+L  +V  A+
Sbjct: 332 PAMMAAAGADMGEVLERLVRSAA 354


>gi|56123446|gb|AAV74562.1| D-alanine:D-lactate ligase [Enterococcus faecium]
 gi|56123464|gb|AAV74571.1| D-alanine:D-lactate ligase [Clostridium sp. MLG245]
 gi|56123466|gb|AAV74572.1| D-alanine:D-lactate ligase [Enterococcus faecium]
          Length = 342

 Score =  116 bits (290), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 77/245 (31%), Positives = 123/245 (50%), Gaps = 10/245 (4%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+AF VLHG  GEDG +Q +  L  IPY    I +SA  MDK  +  +  + G+ V    
Sbjct: 91  DVAFPVLHGKCGEDGAIQGLFVLSGIPYVGCDIQSSAACMDKSLAYILTKNAGIAVPEFQ 150

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
           ++++        ++ P  +KP + GSS G  V K + +  L+    ++  +  ++LIEQ 
Sbjct: 151 IIDKGDKPEAGALTYPVFVKPARSGSSFG--VTKVNGTEELNAAIEAAGQYDGKILIEQA 208

Query: 172 VDGIELTCGVMGDAS----LDVTEIAVPKSDFYSY---ELKYSSLNSTHVLPAKIPLDIY 224
           + G E+ C VMG+       +V +I +    F  +   E +  S N+   +PA IP++  
Sbjct: 209 ISGCEVGCAVMGNEDDLIVGEVDQIRLSHGIFRIHQENEPEKGSENAMITVPADIPVEER 268

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
             VQ  A   ++ +GCRG++R D LF      +   E+N  PG T  S +P M A AG +
Sbjct: 269 NRVQETAKKVYRVLGCRGLARVD-LFLQEDGGIVLNEVNTMPGFTSYSRYPRMVAAAGIT 327

Query: 285 FRELL 289
              L+
Sbjct: 328 LPALI 332


>gi|326802988|ref|YP_004320806.1| D-ala D-ala ligase N-terminal domain protein [Aerococcus urinae
           ACS-120-V-Col10a]
 gi|326650248|gb|AEA00431.1| D-ala D-ala ligase N-terminal domain protein [Aerococcus urinae
           ACS-120-V-Col10a]
          Length = 356

 Score =  116 bits (290), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 77/256 (30%), Positives = 135/256 (52%), Gaps = 20/256 (7%)

Query: 53  LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
           +AF  LHG  GEDG +Q + E L +PY  +G+L+SA  MDK+ SKQ+     +P  P   
Sbjct: 91  IAFPALHGPHGEDGKIQGLFESLNVPYVGAGVLSSAAGMDKIISKQLFQQAQIPQVPFTA 150

Query: 113 VNRFTMDSQHLIS---------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS--SWN 161
           +  +  D +   S          P  +KP   GSS+GI      +    +L+Q+   ++N
Sbjct: 151 LTHYEWDQERAKSLTRIEGELVYPIFVKPANLGSSVGISCANDRE----ELIQAIELAFN 206

Query: 162 HGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAK 218
           +  ++++EQ V+  E+   V+G+ +++ +   E+   KS FY+YE KY +      +PA 
Sbjct: 207 YDRRVIVEQGVEAREVEVAVLGNDAIETSVAGEVVKSKS-FYNYEEKYINNTVELAIPAD 265

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278
           +P +I  +++  A  A+ AI   G++R DF F   +  ++  E+N  PG T  S++P + 
Sbjct: 266 LPGEIMDKIRAYAAKAYAAIDSSGLTRVDF-FVTHNMDIYINEVNTMPGFTQWSMYPSLW 324

Query: 279 AYAGYSFRELLLWMVE 294
              G  + +LL  +++
Sbjct: 325 EATGIPYDQLLERLIQ 340


>gi|27378516|ref|NP_770045.1| D-alanyl-alanine synthetase A [Bradyrhizobium japonicum USDA 110]
 gi|39931121|sp|Q89PS5|DDLB_BRAJA RecName: Full=D-alanine--D-alanine ligase B; AltName:
           Full=D-Ala-D-Ala ligase B; AltName: Full=D-alanylalanine
           synthetase B
 gi|27351664|dbj|BAC48670.1| D-alanine--D-alanine ligase [Bradyrhizobium japonicum USDA 110]
          Length = 376

 Score =  116 bits (290), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 74/258 (28%), Positives = 131/258 (50%), Gaps = 17/258 (6%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+AF +LHG  GEDG VQ  LEL ++ +  S +  SA++MDK  SK+++   G+PV P +
Sbjct: 110 DVAFPILHGPNGEDGTVQGALELADVSFVGSSVTGSAVAMDKEVSKRLMRDAGLPVVPFL 169

Query: 112 LVN-----RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQL 166
                    +      L +P   +KP   GSS+G+   + ++        +  ++   ++
Sbjct: 170 TTTASSRIEYAAAVAALGTPDLFVKPANLGSSVGVSRARSEEEFAASCALAFRYDR--KI 227

Query: 167 LIEQYVDGI-ELTCGVMGDASLDVTE------IAVPKSDFYSYELKYSSLNSTHV-LPAK 218
           L+EQ ++G  E+ C V+ +++ D+        +   +  FYSY+ KY   +   + +PA 
Sbjct: 228 LVEQALNGAREIECSVLEESTGDIRASGLGEIVRASEHGFYSYQAKYIDADGAALHIPAD 287

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278
           +PL   + +Q LA      + C G++R DF       +VF  E N  PG T  S++P++ 
Sbjct: 288 LPLLQARRLQELAVEVFNVLCCEGMARVDFFVQ--GDEVFVNEANTLPGFTSSSMYPKLW 345

Query: 279 AYAGYSFRELLLWMVEDA 296
             +G S  +L+  ++  A
Sbjct: 346 EASGLSQTDLMDKLIAHA 363


>gi|299822342|ref|ZP_07054228.1| D-alanine--D-alanine ligase [Listeria grayi DSM 20601]
 gi|299815871|gb|EFI83109.1| D-alanine--D-alanine ligase [Listeria grayi DSM 20601]
          Length = 371

 Score =  116 bits (290), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 77/270 (28%), Positives = 140/270 (51%), Gaps = 24/270 (8%)

Query: 43  GLVLAHLKPD-LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           G +L +   D + F +LHG  GEDG +Q  LE+L++PY  +G+L+SA +MDK+  K+V +
Sbjct: 90  GEILGYKTEDTVVFPLLHGPNGEDGTIQGFLEVLQLPYVGNGVLSSAAAMDKIIMKKVFA 149

Query: 102 SCGVPVCPSI---LVN------RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152
              +P  P++   LV+          D + ++  P  +KP   GSS+GI      +++  
Sbjct: 150 DAAIPQVPAVSLRLVDWQKHQSEMLSDIEEVLQYPVFVKPANLGSSVGITKATSKEALAA 209

Query: 153 DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK--------SDFYSYEL 204
            + ++  ++   +++IEQ V   E+   V+G+   D    +VP         + FY Y+ 
Sbjct: 210 SINEAFQFDR--RIVIEQGVVAREIEIAVLGN---DTPVCSVPGEILPEDGLAPFYDYKT 264

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           KY+   +   +PAKI   + ++++  A  A+  +   G+ R+DF F     ++   E+N 
Sbjct: 265 KYTDNKTELAIPAKIDPAVLEQMKEYAIQAYLGLDAAGLVRADF-FLTQDNQILLNEVNT 323

Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            PG TP S++P +   +G  +  L+  +VE
Sbjct: 324 MPGFTPYSMYPLLWNESGIPYAALIERLVE 353


>gi|170722840|ref|YP_001750528.1| D-alanine--D-alanine ligase [Pseudomonas putida W619]
 gi|169760843|gb|ACA74159.1| D-alanine--D-alanine ligase [Pseudomonas putida W619]
          Length = 304

 Score =  116 bits (290), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 86/302 (28%), Positives = 155/302 (51%), Gaps = 21/302 (6%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLA----- 54
           +A++ GG SSEREVSL + +A + +LE     +SQI  +  ++      L+ DLA     
Sbjct: 5   IAIITGGDSSEREVSLQTSQAVSQSLE-----ISQIRHEIFTISDYRELLRLDLAKFTRV 59

Query: 55  FNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
           F  LHG FGE+G+ QA LE   IPY       SA+ M+K+ +K +    G+ V   +   
Sbjct: 60  FLALHGGFGENGMAQAYLEGQGIPYNGPSPQTSAICMNKLLTKHIAMGLGINVANYLYSR 119

Query: 115 R----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           R            +  P ++KP + G S G+ +++  ++   D + +++  H   +L+E+
Sbjct: 120 RGDDLCVEKINEQLGTPCIVKPNREGCSFGVSLVRDLETDLQDAINAAAQFHTG-VLVEE 178

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
           ++ G EL+      A+L +  +A  +S+F+SYE K+ S  +T  L   +    ++++   
Sbjct: 179 FISGPELSVCYFNKATLPIYSLAF-ESEFFSYEAKFISSKTTATL-TTLDRTTHQQLNNY 236

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
            F   +A+      R+DF+    + + + +E+N  PG+T  S+FP+     G  F +L+L
Sbjct: 237 CFAIAEALELDYF-RADFIIH--NTEPYLIELNTLPGLTSHSLFPKACQQHGIEFDKLVL 293

Query: 291 WM 292
            +
Sbjct: 294 LL 295


>gi|254827798|ref|ZP_05232485.1| D-Ala-D-Ala ligase [Listeria monocytogenes FSL N3-165]
 gi|254832180|ref|ZP_05236835.1| D-alanyl-alanine synthetase A [Listeria monocytogenes 10403S]
 gi|258600179|gb|EEW13504.1| D-Ala-D-Ala ligase [Listeria monocytogenes FSL N3-165]
          Length = 370

 Score =  116 bits (290), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 72/259 (27%), Positives = 134/259 (51%), Gaps = 23/259 (8%)

Query: 53  LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
           + F +LHG  GEDG VQ + E+L IPY  +G+LAS+ +MDK+  K++ +  G+P  P++ 
Sbjct: 100 VVFPLLHGPNGEDGTVQGLFEVLNIPYVGNGVLASSAAMDKIVMKKIFADAGIPQVPAVA 159

Query: 113 VNRFTMDSQH---------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
           V      +           +++ P  +KP   GSS+GI      + + +D + + ++ + 
Sbjct: 160 VRLIDWKNYQEEMVAEMEEVLTYPVFVKPANLGSSVGISKATNKKEL-VDAM-TEAFLYD 217

Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK--------SDFYSYELKYSSLNSTHVL 215
            ++++EQ V   E+  GV+G+   D    +VP         + FY Y+ KY   N+  ++
Sbjct: 218 RRVVVEQGVVAREIEMGVLGN---DTPVCSVPGEILPEGAVATFYDYKAKYQDNNTALII 274

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275
           P ++  +I ++++  A  A   +   G+ R+DF       ++F  E+N  PG TP S++P
Sbjct: 275 PTEVDPEILEQMKEYAIQAFLGLDASGLVRADFFLTE-DNQLFLNEVNTMPGFTPYSMYP 333

Query: 276 EMAAYAGYSFRELLLWMVE 294
            +    G  +  L+  +V+
Sbjct: 334 LLWQETGLPYGALIERLVD 352


>gi|21911403|gb|AAC23582.2| D-alanine:D-alanine ligase-related protein [Streptomyces
           toyocaensis]
          Length = 346

 Score =  116 bits (290), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 79/250 (31%), Positives = 130/250 (52%), Gaps = 14/250 (5%)

Query: 49  LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
           ++ D+   VLHG  GEDG +Q +LEL  IPY    I +SA+ MDK  +  VV + G+   
Sbjct: 89  IRLDVVLPVLHGKLGEDGAMQGLLELSGIPYVGCDIQSSAVCMDKSLAYAVVRNAGI-AT 147

Query: 109 PSI--LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQL 166
           P+   +    T+D+     P +V KP + GSS G+  + +++ +   +  +  ++   ++
Sbjct: 148 PNFWTVAADETVDAARFTYPVFV-KPARSGSSFGVTKVSREEEMSSAVETARQYDS--KV 204

Query: 167 LIEQYVDGIELTCGVMGDAS----LDVTEIAVPKSDFYSYEL---KYSSLNSTHVLPAKI 219
           LIE+ V G E+ C ++G  +     +V  IA+    F  ++    +  S NS  ++PA I
Sbjct: 205 LIEEAVPGSEIGCAILGTGTDLVVGEVDRIALSHGFFRIHQEDSPETGSENSIAIVPADI 264

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279
           P      VQ  A   ++ +GCRGI+R D +F     +V   E+N  PG+T  S +P M A
Sbjct: 265 PEASRLRVQEEAKAVYRVLGCRGIARVD-MFLKEDGEVVLNEVNTLPGLTSYSRYPRMMA 323

Query: 280 YAGYSFRELL 289
            AG    E++
Sbjct: 324 AAGLPMSEVI 333


>gi|16802896|ref|NP_464381.1| D-alanyl-alanine synthetase A [Listeria monocytogenes EGD-e]
 gi|224503176|ref|ZP_03671483.1| D-alanyl-alanine synthetase A [Listeria monocytogenes FSL R2-561]
 gi|22095558|sp|Q8Y8P1|DDL_LISMO RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|16410258|emb|CAC98933.1| D-alanine--D-alanine ligase [Listeria monocytogenes EGD-e]
          Length = 370

 Score =  115 bits (289), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 72/259 (27%), Positives = 134/259 (51%), Gaps = 23/259 (8%)

Query: 53  LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
           + F +LHG  GEDG VQ + E+L IPY  +G+LAS+ +MDK+  K++ +  G+P  P++ 
Sbjct: 100 VVFPLLHGPNGEDGTVQGLFEVLNIPYVGNGVLASSAAMDKIVMKKIFADAGIPQVPAVA 159

Query: 113 VNRFTMDSQH---------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
           V      +           +++ P  +KP   GSS+GI      + + +D + + ++ + 
Sbjct: 160 VRLIDWKNYQEEMVAEMEEVLTYPVFVKPANLGSSVGISKATNKKEL-VDAM-TEAFLYD 217

Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK--------SDFYSYELKYSSLNSTHVL 215
            ++++EQ V   E+  GV+G+   D    +VP         + FY Y+ KY   N+  ++
Sbjct: 218 RRVVVEQGVVAREIEMGVLGN---DTPVCSVPGEILPEGAVATFYDYKAKYQDNNTALII 274

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275
           P ++  +I ++++  A  A   +   G+ R+DF       ++F  E+N  PG TP S++P
Sbjct: 275 PTEVDPEILEQMKEYAIQAFLGLDASGLVRADFFLTE-DNQLFLNEVNTMPGFTPYSMYP 333

Query: 276 EMAAYAGYSFRELLLWMVE 294
            +    G  +  L+  +V+
Sbjct: 334 LLWQETGLPYGALIERLVD 352


>gi|11345396|gb|AAG34685.1|AF310955_1 ligase VanB2 [Enterococcus faecalis]
 gi|11345406|gb|AAG34693.1|AF310957_1 ligase VanB2 [Enterococcus faecium]
          Length = 342

 Score =  115 bits (289), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 75/245 (30%), Positives = 122/245 (49%), Gaps = 10/245 (4%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+AF VLHG  GEDG +Q +  L  IPY    I +SA  MDK  +  +  + G+ V    
Sbjct: 91  DVAFPVLHGKCGEDGAIQGLFVLSGIPYVGCDIQSSAACMDKSLAYILTKNAGIAVPEFQ 150

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
           ++++        ++ P  +KP + GSS G+  +   +   L+    ++  +  ++LIEQ 
Sbjct: 151 MIDKGDKPEAGALTYPVFVKPARSGSSFGVTKVNGPEE--LNAAIEAAGQYDGKILIEQA 208

Query: 172 VDGIELTCGVMGDAS----LDVTEIAVPKSDFYSY---ELKYSSLNSTHVLPAKIPLDIY 224
           + G E+ C VMG+       +V +I +    F  +   E +  S N+   +PA IP++  
Sbjct: 209 ISGCEVGCAVMGNEDDLIVGEVDQIRLSHGIFRIHQENEPEKGSENAMITVPADIPVEER 268

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
             VQ  A   ++ +GCRG++R D LF      +   E+N  PG T  S +P M A AG +
Sbjct: 269 NRVQETAKKVYRVLGCRGLARVD-LFLQEDGGIVLNEVNTMPGFTSYSRYPRMVAAAGIT 327

Query: 285 FRELL 289
              L+
Sbjct: 328 LPALI 332


>gi|284801184|ref|YP_003413049.1| D-alanyl-alanine synthetase A [Listeria monocytogenes 08-5578]
 gi|284994326|ref|YP_003416094.1| D-alanyl-alanine synthetase A [Listeria monocytogenes 08-5923]
 gi|284056746|gb|ADB67687.1| D-alanyl-alanine synthetase A [Listeria monocytogenes 08-5578]
 gi|284059793|gb|ADB70732.1| D-alanyl-alanine synthetase A [Listeria monocytogenes 08-5923]
          Length = 370

 Score =  115 bits (289), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 73/259 (28%), Positives = 131/259 (50%), Gaps = 23/259 (8%)

Query: 53  LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
           + F +LHG  GEDG VQ + E+L IPY  +G+LAS+ +MDK+  K++ +  G+P  P++ 
Sbjct: 100 VVFPLLHGPNGEDGTVQGLFEVLNIPYVGNGVLASSAAMDKIVMKKIFADAGIPQVPAVA 159

Query: 113 VNRFTMDSQH---------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
           V      +           +++ P  +KP   GSS+GI   K      L    + ++ + 
Sbjct: 160 VRLIDWKNYQEEMVAEMEEVLTYPVFVKPANLGSSVGI--SKATNKKELADAMTEAFLYD 217

Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK--------SDFYSYELKYSSLNSTHVL 215
            ++++EQ V   E+  GV+G+   D    +VP         + FY Y+ KY   N+  ++
Sbjct: 218 RRVVVEQGVVAREIEMGVLGN---DTPVCSVPGEILPEGAVATFYDYKAKYQDNNTALII 274

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275
           P ++  +I ++++  A  A   +   G+ R+DF       ++F  E+N  PG TP S++P
Sbjct: 275 PTEVDPEILEQMKEYAVQAFLGLDASGLVRADFFLTE-DNQLFLNEVNTMPGFTPYSMYP 333

Query: 276 EMAAYAGYSFRELLLWMVE 294
            +    G  +  L+  +V+
Sbjct: 334 LLWQETGLPYGALIERLVD 352


>gi|224500417|ref|ZP_03668766.1| D-alanyl-alanine synthetase A [Listeria monocytogenes Finland 1988]
          Length = 365

 Score =  115 bits (289), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 73/259 (28%), Positives = 131/259 (50%), Gaps = 23/259 (8%)

Query: 53  LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
           + F +LHG  GEDG VQ + E+L IPY  +G+LAS+ +MDK+  K++ +  G+P  P++ 
Sbjct: 100 VVFPLLHGPNGEDGTVQGLFEVLNIPYVGNGVLASSAAMDKIVMKKIFADAGIPQVPAVA 159

Query: 113 VNRFTMDSQH---------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
           V      +           +++ P  +KP   GSS+GI   K      L    + ++ + 
Sbjct: 160 VRLIDWKNYQEEMVAEMEEVLTYPVFVKPANLGSSVGI--SKATNKKELADAMTEAFLYD 217

Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK--------SDFYSYELKYSSLNSTHVL 215
            ++++EQ V   E+  GV+G+   D    +VP         + FY Y+ KY   N+  ++
Sbjct: 218 RRVVVEQGVVAREIEMGVLGN---DTPVCSVPGEILPEGAVATFYDYKAKYQDNNTALII 274

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275
           P ++  +I ++++  A  A   +   G+ R+DF       ++F  E+N  PG TP S++P
Sbjct: 275 PTEVDPEILEQMKEYAVQAFLGLDASGLVRADFFLTE-DNQLFLNEVNTMPGFTPYSMYP 333

Query: 276 EMAAYAGYSFRELLLWMVE 294
            +    G  +  L+  +V+
Sbjct: 334 LLWQETGLPYGALIERLVD 352


>gi|254823877|ref|ZP_05228878.1| D-Ala-D-Ala ligase [Listeria monocytogenes FSL J1-194]
 gi|293593101|gb|EFG00862.1| D-Ala-D-Ala ligase [Listeria monocytogenes FSL J1-194]
          Length = 370

 Score =  115 bits (289), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 72/259 (27%), Positives = 131/259 (50%), Gaps = 23/259 (8%)

Query: 53  LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
           + F +LHG  GEDG VQ + E+L IPY  +G+LAS+ +MDK+  K++ +  G+   P++ 
Sbjct: 100 VVFPLLHGPNGEDGTVQGLFEVLNIPYVGNGVLASSAAMDKIVMKKIFADAGIQQVPAVA 159

Query: 113 VN---------RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
           V              + + +++ P  +KP   GSS+GI   K      L    + ++ + 
Sbjct: 160 VRLIDWKNYQAEMVAEMEEVLTYPVFVKPANLGSSVGI--SKATNKKELADAMTEAFLYD 217

Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK--------SDFYSYELKYSSLNSTHVL 215
            ++++EQ V   E+  GV+G+   D    +VP         + FY Y+ KY   N+  ++
Sbjct: 218 RRVVVEQGVVAREIEMGVLGN---DTPVCSVPGEILPEGAVATFYDYKAKYQDNNTALII 274

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275
           P ++  +I ++++  A  A   +   G+ R+DF       ++F  E+N  PG TP S++P
Sbjct: 275 PTEVDPEILEQMKEYAVQAFLGLDASGLVRADFFLTE-DNQLFLNEVNTMPGFTPYSMYP 333

Query: 276 EMAAYAGYSFRELLLWMVE 294
            +    G  +  L+  +V+
Sbjct: 334 LLWQETGLPYGALIERLVD 352


>gi|257877137|ref|ZP_05656790.1| D-alanine:D-alanine ligase [Enterococcus casseliflavus EC20]
 gi|257811303|gb|EEV40123.1| D-alanine:D-alanine ligase [Enterococcus casseliflavus EC20]
          Length = 362

 Score =  115 bits (289), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 90/334 (26%), Positives = 152/334 (45%), Gaps = 46/334 (13%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVG------LVLAHLKPD---- 52
           +L GG S+E EVSL S  +  +A+    ++V  + + +         L  A   PD    
Sbjct: 5   LLYGGRSAEHEVSLLSAFSVVNAVYYNYYQVQLVMITKEGRWLKGPLLTEAPTSPDTLAL 64

Query: 53  --------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
                               + F +LHG  GEDG +Q  LE + +PY  +G+L SA  MD
Sbjct: 65  TNEETKGEEISPGAIYEEDAIVFPLLHGPNGEDGTIQGFLETIGMPYVGAGVLTSACGMD 124

Query: 93  KMRSKQVVSSCGVPVCP--SILVNRFTMDSQHLISP-------PYVIKPLKGGSSLGIIV 143
           K+ +K ++ + G+P  P   +L N +  + + +          P  +KP   GSS+GI  
Sbjct: 125 KIMTKYILQAAGIPQVPYVPVLKNAWKENPKKIFDQCEGSLLYPMFVKPANMGSSVGI-- 182

Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFY 200
            K +    L      ++ +  + ++EQ ++  E+   V+G+  +  T   EI V    FY
Sbjct: 183 SKAENREELQNALQEAYRYDTRAIVEQGIEAREIEVAVLGNEDVRTTMPGEI-VKDVAFY 241

Query: 201 SYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260
            Y  KY        +PA+IP +   + Q  A  A+  +G  G+SR DF F     ++F  
Sbjct: 242 DYNSKYIDNRIEMQIPAQIPEETQAKAQEFAKKAYTMLGGSGLSRCDF-FLTNKNELFLN 300

Query: 261 EINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           E+N  PG T  S++P +    G  + +L+  +++
Sbjct: 301 ELNTMPGFTEFSMYPLLWEKTGLPYGDLIEELIQ 334


>gi|257870941|ref|ZP_05650594.1| D-alanine:D-alanine ligase [Enterococcus gallinarum EG2]
 gi|24711813|gb|AAN62561.1| D-alanine:D-alanine ligase [Enterococcus gallinarum]
 gi|62632241|gb|AAX89143.1| D-alanine:D-alanine ligase [Enterococcus gallinarum]
 gi|62632243|gb|AAX89144.1| D-alanine:D-alanine ligase [Enterococcus gallinarum]
 gi|257805105|gb|EEV33927.1| D-alanine:D-alanine ligase [Enterococcus gallinarum EG2]
          Length = 351

 Score =  115 bits (288), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 75/254 (29%), Positives = 126/254 (49%), Gaps = 16/254 (6%)

Query: 53  LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--S 110
           + F +LHG  GEDG +Q  LE + +PY  +G+L SA  MDK+ +K ++ + G+P  P   
Sbjct: 85  IVFPLLHGPNGEDGTIQGFLETIGMPYVGAGVLTSACGMDKIMTKYILQAAGIPQVPYVP 144

Query: 111 ILVNRFTMDSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
           +L N +  + + +          P  IKP   GSS+GI   K +    L      ++ + 
Sbjct: 145 VLKNYWKENPKKVFEQCEGSLLYPMFIKPANMGSSVGI--TKAENREELQNALQEAYRYD 202

Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
            + ++EQ ++  E+   V+G+  +  T   EI V    FY Y  KY        +PA+IP
Sbjct: 203 TRAIVEQGIEAREIEVAVLGNEDVRTTMPGEI-VKDVAFYDYNSKYLDNKIEMQIPAQIP 261

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280
            +   + Q  A  A+  +G  G+SR DF F     ++F  E+N  PG T  S++P +   
Sbjct: 262 EETQAKAQEFAKKAYTMLGGSGLSRCDF-FLTNKNELFLNELNTMPGFTEFSMYPLLWEK 320

Query: 281 AGYSFRELLLWMVE 294
            G  + +L+  +++
Sbjct: 321 TGLPYGDLIEELIQ 334


>gi|257867059|ref|ZP_05646712.1| D-alanine:D-alanine ligase [Enterococcus casseliflavus EC30]
 gi|257873394|ref|ZP_05653047.1| D-alanine:D-alanine ligase [Enterococcus casseliflavus EC10]
 gi|257801115|gb|EEV30045.1| D-alanine:D-alanine ligase [Enterococcus casseliflavus EC30]
 gi|257807558|gb|EEV36380.1| D-alanine:D-alanine ligase [Enterococcus casseliflavus EC10]
          Length = 358

 Score =  115 bits (288), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 90/334 (26%), Positives = 152/334 (45%), Gaps = 46/334 (13%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVG------LVLAHLKPD---- 52
           +L GG S+E EVSL S  +  +A+    ++V  + + +         L  A   PD    
Sbjct: 5   LLYGGRSAEHEVSLLSAFSVVNAVYYNYYQVQLVMITKEGRWLKGPLLTEAPTSPDTLAL 64

Query: 53  --------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
                               + F +LHG  GEDG +Q  LE + +PY  +G+L SA  MD
Sbjct: 65  TNEETKGEEITPGAIYEEDAIVFPLLHGPNGEDGTIQGFLETIGMPYVGAGVLTSACGMD 124

Query: 93  KMRSKQVVSSCGVPVCP--SILVNRFTMDSQHLISP-------PYVIKPLKGGSSLGIIV 143
           K+ +K ++ + G+P  P   +L N +  + + +          P  +KP   GSS+GI  
Sbjct: 125 KIMTKYILQAAGIPQVPYVPVLKNAWKENPKKIFDQCEGSLLYPMFVKPANMGSSVGI-- 182

Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFY 200
            K +    L      ++ +  + ++EQ ++  E+   V+G+  +  T   EI V    FY
Sbjct: 183 SKAENREELQNALQEAYRYDTRAIVEQGIEAREIEVAVLGNEDVRTTMPGEI-VKDVAFY 241

Query: 201 SYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260
            Y  KY        +PA+IP +   + Q  A  A+  +G  G+SR DF F     ++F  
Sbjct: 242 DYNSKYIDNRIEMQIPAQIPEETQAKAQEFAKKAYTMLGGSGLSRCDF-FLTNKNELFLN 300

Query: 261 EINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           E+N  PG T  S++P +    G  + +L+  +++
Sbjct: 301 ELNTMPGFTEFSMYPLLWEKTGLPYGDLIEELIQ 334


>gi|86358076|ref|YP_469968.1| D-alanine-D-alanine ligase protein [Rhizobium etli CFN 42]
 gi|86282178|gb|ABC91241.1| D-alanine-D-alanine ligase protein [Rhizobium etli CFN 42]
          Length = 358

 Score =  115 bits (288), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 98/341 (28%), Positives = 160/341 (46%), Gaps = 51/341 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALE------------------------------DAG 30
           +AVL GG S+E +VS+ S     +ALE                               +G
Sbjct: 10  IAVLFGGRSAEHDVSILSATNVMAALEPEKYDALPVFVTHEGQWLLSSFEDGRLATPSSG 69

Query: 31  FKVSQIDVDRSVGLVL-AHLKP------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
            ++  +   R   L + AH  P      D+ F VLHG  GEDG VQ   ++  +P    G
Sbjct: 70  TEICLVPGGRGRMLAMSAHGAPHELPRIDILFPVLHGPHGEDGSVQGSAQVARVPLAGCG 129

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSL 139
           IL SA ++DK  +K+++ + G+PV  ++ ++     S    +  +  P  IKP + GSS+
Sbjct: 130 ILGSATALDKDIAKRLLRAAGLPVARAVTIHEGAAPSLSALEGELGLPLFIKPARQGSSV 189

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM--GDASLDVTE----IA 193
           G+  +   Q     L Q  ++ H   LL E++V G E+   V+   D  L V+     + 
Sbjct: 190 GVAKVHASQEFAAALEQ--AFRHDRILLAEEFVAGREIEFSVLEDTDGKLFVSRPGEIVP 247

Query: 194 VPKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
                FY+Y  KY   N   + +PA +P +I   ++ +A  A +A+GC G++R DF    
Sbjct: 248 AESHGFYNYSAKYIDENGAALKVPADLPAEIEAAMRDMAARAFRAVGCDGMARVDFFLTS 307

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
             R V   E+N  PG T +S++ +  A +G S+ E++  +V
Sbjct: 308 DMRFVIN-ELNTIPGFTDISMYSKAMAASGVSYAEIIDRLV 347


>gi|318040424|ref|ZP_07972380.1| D-alanine--D-alanine ligase [Synechococcus sp. CB0101]
          Length = 364

 Score =  115 bits (288), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 82/250 (32%), Positives = 127/250 (50%), Gaps = 15/250 (6%)

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN-- 114
           VLHG  GEDG +Q +  L+++P+  SG+L SA+ MDK   K   ++ G+P  P   V+  
Sbjct: 101 VLHGPNGEDGTIQGLFSLMQVPFVGSGVLGSAVGMDKQAMKAAFAAAGLPQVPYACVDAQ 160

Query: 115 RFTMDSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL 167
               D Q L+         P  IKP   GSS+GI        +   L  ++S  H  +L+
Sbjct: 161 ELEADPQALLDRLEQQLGYPCFIKPANLGSSVGISKATNRSELLAGLELAAS--HDPRLV 218

Query: 168 IEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           +EQ +D  EL C V+G  S+  +   EI    +D+Y Y+ KYS   S  V+PA++   I 
Sbjct: 219 VEQGIDARELECAVLGGRSMQASVLGEICF-DADWYDYDTKYSDGKSHTVIPAEVSSAIS 277

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
              + +A  A +A+   G++R DF  D  S  ++  EIN  PG T  S++P +   +G  
Sbjct: 278 DRARSMAIAACRAVAAEGLARVDFFLDRSSGDLWLNEINTLPGFTSQSMYPMLWEASGLP 337

Query: 285 FRELLLWMVE 294
              L+  +V+
Sbjct: 338 LDALVHQLVQ 347


>gi|217388366|ref|YP_002333395.1| D-alanine--D-lactate ligase [Enterococcus faecalis]
 gi|56123444|gb|AAV74561.1| D-alanine:D-lactate ligase [Clostridium sp. MLG856-1]
 gi|56123454|gb|AAV74566.1| D-alanine:D-lactate ligase [Clostridium sp. MLG392]
 gi|56123456|gb|AAV74567.1| D-alanine:D-lactate ligase [Clostridium sp. MLG661]
 gi|61191896|gb|AAX39412.1| D-alanine:D-lactate ligase [Enterococcus faecium]
 gi|216409908|dbj|BAH02343.1| vanB2 [Enterococcus faecalis]
          Length = 342

 Score =  115 bits (288), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 77/245 (31%), Positives = 123/245 (50%), Gaps = 10/245 (4%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+AF VLHG  GEDG +Q +  L  IPY    I +SA  MDK  +  +  + G+ V    
Sbjct: 91  DVAFPVLHGKCGEDGAIQGLFVLSGIPYVGCDIQSSAACMDKSLAYILTKNAGIAVPEFQ 150

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
           ++++        ++ P  +KP + GSS G  V K + +  L+    ++  +  ++LIEQ 
Sbjct: 151 MIDKGDKPEAGALTYPVFVKPARSGSSFG--VTKVNGTEELNAAIEAAGQYDGKILIEQA 208

Query: 172 VDGIELTCGVMGDAS----LDVTEIAVPKSDFYSY---ELKYSSLNSTHVLPAKIPLDIY 224
           + G E+ C VMG+       +V +I +    F  +   E +  S N+   +PA IP++  
Sbjct: 209 ISGCEVGCAVMGNEDDLIVGEVDQIRLSHGIFRIHQENEPEKGSENAMITVPADIPVEER 268

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
             VQ  A   ++ +GCRG++R D LF      +   E+N  PG T  S +P M A AG +
Sbjct: 269 NRVQETAKKVYRVLGCRGLARVD-LFLQEDGGIVLNEVNTLPGFTSYSRYPRMMAAAGIT 327

Query: 285 FRELL 289
              L+
Sbjct: 328 LPALI 332


>gi|187251497|ref|YP_001875979.1| D-alanine/D-alanine ligase [Elusimicrobium minutum Pei191]
 gi|186971657|gb|ACC98642.1| D-Alanine/D-alanine ligase [Elusimicrobium minutum Pei191]
          Length = 353

 Score =  115 bits (288), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 80/251 (31%), Positives = 127/251 (50%), Gaps = 17/251 (6%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+ F VLHG  GEDG +Q + EL+E PY   G++ASA+ MDK  SK + +  GVP  P I
Sbjct: 85  DVLFPVLHGTKGEDGCIQGLFELMETPYVGCGVMASAIGMDKEVSKVLAAYAGVPTLPYI 144

Query: 112 LVNR-------FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164
              +       F   +  L  P +V KP+  GSS+GI  +K++    L+     +    +
Sbjct: 145 TFKKGDSVTKDFKAKTAKLGYPVFV-KPVNLGSSIGITKVKEEAF--LEKAIEFALKFDN 201

Query: 165 QLLIEQYVDG-IELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHV-LPAK 218
            +LIE+ V    E+ C V G+     S    E+     +F+ Y  KY   N   V +PA 
Sbjct: 202 DILIEKGVQSPKEIFCAVCGEGNNTESSSCGELIPNGHEFFDYHSKYIDPNGCTVKVPAS 261

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278
           +  +  K +Q+ + +  +     G +R DFL      ++++ EIN  PGM+  S+FP++ 
Sbjct: 262 VSEEEDKLMQKYSRMIFKVFKACGFARVDFLLGK-DGQIYFSEINTLPGMSNASLFPQLW 320

Query: 279 AYAGYSFRELL 289
             AG  + ++L
Sbjct: 321 RAAGKKYEDVL 331


>gi|317504078|ref|ZP_07962081.1| D-alanine-D-alanine ligase [Prevotella salivae DSM 15606]
 gi|315664820|gb|EFV04484.1| D-alanine-D-alanine ligase [Prevotella salivae DSM 15606]
          Length = 331

 Score =  115 bits (287), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 89/327 (27%), Positives = 153/327 (46%), Gaps = 37/327 (11%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS-------VGLVLAHLKPDL 53
           +A++ GG SSE +VSL S +   S  +   + V  +DV  +        G  +A  K D 
Sbjct: 8   IAIVCGGDSSEHDVSLRSAQGLYSFFDKQKYNVFIVDVKGTDWHVHLDSGATVAIDKNDF 67

Query: 54  AFNV-------------LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           +F +             +HG  GE+G++Q   +L+ +PY+ SG+L  A++ DK      +
Sbjct: 68  SFKLDGKSVFFDYAYITIHGQPGENGVMQGYFDLIHLPYSTSGVLVEAMTFDKYVLNNYL 127

Query: 101 SSCGVPVCPSILVNRFTMDSQHLISP----PYVIKPLKGGSSLGIIVIKK-DQSIPLDLL 155
              GV V  S+L+ R     +  I      P  +KP   GSS G+  +K  DQ  P    
Sbjct: 128 RGFGVRVADSMLLRRGEEYDEAKIEARFGMPCFVKPAADGSSFGVSKVKNADQLAP---A 184

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDAS----LDVTEIAVPKSDFYSYELKYSSLNS 211
              ++   D+++IE +++G+E++ G+            TE+ V K++F+ Y+ KY+    
Sbjct: 185 LRKAFMESDEVMIEGFLNGVEISQGIYKTREKMVVFPATEV-VTKNEFFDYDAKYNG-QV 242

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK---VFWLEINVQPGM 268
             + PA++  +   +V       +  +   GI R D++    +     V  LEIN  PGM
Sbjct: 243 QEITPARLSKETADKVAAETSRIYDILHANGIIRIDYIISKDAEGNDVVNMLEINTTPGM 302

Query: 269 TPVSIFPEMAAYAGYSFRELLLWMVED 295
           T  S  P+    AG   +++L  +VE+
Sbjct: 303 TVTSFIPQQVRAAGLDIKDVLSDIVEN 329


>gi|4405962|gb|AAD19835.1| D-alanyl-D-alanine ligase [Amycolatopsis orientalis]
          Length = 348

 Score =  115 bits (287), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 76/250 (30%), Positives = 128/250 (51%), Gaps = 10/250 (4%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+   VLHG FGEDG +Q +LE+  IPY    + +S + +DK  +  VV   G+      
Sbjct: 92  DVVLPVLHGKFGEDGAMQGLLEISGIPYVGCDLPSSVMCIDKSLTYSVVRGAGIATPTFH 151

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
           +V          ++ P  +KP + GSS G+  +   + +P  L ++  ++   ++LIE+ 
Sbjct: 152 IVTPDNDVDPDALNYPVFVKPARSGSSFGVSKVSSKEELPAALAEARQYDA--KILIEEA 209

Query: 172 VDGIELTCGVMGDA----SLDVTEIAVPKSDFYSYELK---YSSLNSTHVLPAKIPLDIY 224
           V G E+ C ++GD     + +V  +A+    F  ++ K     S NS+ ++PA IP    
Sbjct: 210 VIGSEIGCSILGDGEDLFAGEVDRVALTHGFFKIHQEKSPETGSENSSFIVPADIPDASR 269

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
             VQ  A + ++A+GC G++R D LF      V   E+N  PG+T  S +P M   AG S
Sbjct: 270 DLVQETAKVIYRALGCSGLARVD-LFLKEDGSVVLNEVNTLPGLTSYSRYPRMMNAAGLS 328

Query: 285 FRELLLWMVE 294
             +++  +V+
Sbjct: 329 LGDVIDRLVK 338


>gi|332669024|ref|YP_004452032.1| D-alanine/D-alanine ligase [Cellulomonas fimi ATCC 484]
 gi|332338062|gb|AEE44645.1| D-alanine/D-alanine ligase [Cellulomonas fimi ATCC 484]
          Length = 323

 Score =  115 bits (287), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 94/310 (30%), Positives = 145/310 (46%), Gaps = 22/310 (7%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI----------DVDRSVGLVLAHLK 50
           +AV+ GG S E EVSL+S  +   AL D  + V  +          +V R VGL  A   
Sbjct: 8   VAVVGGGQSCEHEVSLASAASVVGALTDR-YDVVPLTITRDGTWCDEVGRPVGLARAVQT 66

Query: 51  PDLAFNVL---HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV 107
                 V+   HG  GEDG + A+ EL  +PY  SG+ A AL+MDK  +K V  + GV  
Sbjct: 67  LGTCAAVVPMVHGPRGEDGTLAALCELAGVPYVGSGVGAGALAMDKWATKLVAQAVGVAT 126

Query: 108 CPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL 167
            P   +      + ++   P V+KP+  GSS G+ +++    +   L   ++     ++L
Sbjct: 127 APG-RLLTAATAAAYVFEHPVVVKPVAAGSSHGVTLVRDAGGLRPAL--DAALRLDGRVL 183

Query: 168 IEQYVDGIELTCGVM--GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
           +E  V+G E+   V+  GD  +    + V     + +  KY       V PA +P    +
Sbjct: 184 VEDVVEGREVDVAVLATGDGHVVAPLLEVVVDGLFDHAAKYGGTADLRV-PADVPEADAQ 242

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285
            ++  A     A+GC G++R DF     +      E+N  PG+T  S  P M A AG S+
Sbjct: 243 ALRDAAVRVFDALGCAGVARVDFFL--TADGPVLNEVNTTPGLTEHSQVPRMFAAAGLSY 300

Query: 286 RELLLWMVED 295
            +LL  +V D
Sbjct: 301 PDLLDRLVRD 310


>gi|11345394|gb|AAG34684.1|AF310954_1 ligase VanB2 [Enterococcus faecium]
          Length = 342

 Score =  115 bits (287), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 75/245 (30%), Positives = 122/245 (49%), Gaps = 10/245 (4%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+AF VLHG  GEDG +Q +  L  IPY    I +SA  MDK  +  +  + G+ V    
Sbjct: 91  DVAFPVLHGKCGEDGAIQGLFVLSGIPYVGCDIQSSAACMDKSLAYILTKNAGIAVPEFQ 150

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
           ++++        ++ P  +KP + GSS G+  +   +   L+    ++  +  ++LIEQ 
Sbjct: 151 MIDKGDKPEAGALTYPVFVKPARAGSSFGLTKVNGTEE--LNAAIEAAGQYDGKILIEQA 208

Query: 172 VDGIELTCGVMGDAS----LDVTEIAVPKSDFYSY---ELKYSSLNSTHVLPAKIPLDIY 224
           + G E+ C VMG+       +V +I +    F  +   E +  S N+   +PA IP++  
Sbjct: 209 ISGCEVGCAVMGNEDDLIVGEVDQIRLSHGIFRIHQENEPEKGSENAMITVPADIPVEER 268

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
             VQ  A   ++ +GCRG++R D LF      +   E+N  PG T  S +P M A AG +
Sbjct: 269 NRVQETAKKVYRVLGCRGLARVD-LFLQEDGGIVLNEVNTLPGFTSYSRYPRMMAAAGIT 327

Query: 285 FRELL 289
              L+
Sbjct: 328 LPALI 332


>gi|188994624|ref|YP_001928876.1| D-alanyl-alanine synthetase A [Porphyromonas gingivalis ATCC 33277]
 gi|229485973|sp|B2RIT4|DDL_PORG3 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|188594304|dbj|BAG33279.1| putative D-alanine--D-alanine ligase [Porphyromonas gingivalis ATCC
           33277]
          Length = 330

 Score =  115 bits (287), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 88/326 (26%), Positives = 152/326 (46%), Gaps = 36/326 (11%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------------------- 40
           +AV+ GG S E  VSL S     S L    F    + ++R                    
Sbjct: 6   VAVIAGGYSGEHSVSLKSAAGILSWLGSEPFSAFLVLIERDRWSVRVSEQREVPLDKNDF 65

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           S  L    ++ D A+  +HG  GE+GL+Q  L+++ IPY     L  +L+ +K    + +
Sbjct: 66  SFDLDDERIRFDYAYITIHGTPGENGLLQGYLDMIGIPYNTGDTLVESLTFNKYVCNRFL 125

Query: 101 SSCGVPVCPSI-LVNRFTM----DSQHLISPPYVIKPLKGGSSLGII-VIKKDQSIPLDL 154
           S  G+ +  S+ L  R T     D    +  P  +KP  GGSS+    V++  Q +P   
Sbjct: 126 SGFGIRIADSMRLTGRDTQPDVADLTARMGLPLFVKPNVGGSSIATTKVVEAAQLLP--- 182

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGD----ASLDVTEIAVPKSDFYSYELKYSSLN 210
               +++ G++++IE+ + G E+TCG         +L VTE+ V  ++F+ ++ KY+   
Sbjct: 183 AIGQAFSEGEEVMIERLICGTEVTCGAFLRKKEVVALPVTEV-VAHNEFFDFDAKYNGA- 240

Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270
              + PA+I  +  + +Q +    ++ +  RGI R D++ +        LE+N  PGMTP
Sbjct: 241 VEEITPARISDEATRLIQTMTARIYELLNARGIIRVDYIIEADGIPTL-LEVNTTPGMTP 299

Query: 271 VSIFPEMAAYAGYSFRELLLWMVEDA 296
            S  P+    A    +E+L  ++ D 
Sbjct: 300 TSFIPQQVRAAEMDMKEVLCTIIRDG 325


>gi|261251191|ref|ZP_05943765.1| D-alanine--D-alanine ligase [Vibrio orientalis CIP 102891]
 gi|260938064|gb|EEX94052.1| D-alanine--D-alanine ligase [Vibrio orientalis CIP 102891]
          Length = 330

 Score =  115 bits (287), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 101/334 (30%), Positives = 155/334 (46%), Gaps = 50/334 (14%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDA-GFKVSQIDV---------------DRSVGLVL 46
           +L GG SSE EVSL S     S LE    F V ++++               D + G + 
Sbjct: 8   LLCGGGSSEHEVSLVSANFLQSQLEQTPEFNVVRVEMKTDGWYTDSGDLAYLDSNSGTLN 67

Query: 47  A---HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103
                 K D     +HG  GE G +Q++LEL  IPY   G  AS  S +K+ SK    + 
Sbjct: 68  TDSQQTKLDFVVPCIHGFPGETGDIQSMLELSGIPYLGCGPEASTNSFNKITSKLWYDAL 127

Query: 104 GVPVCPSILVNRFTMDSQHLISPPY------VIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
           G+P  P I ++  +  +  L    +       +K  + GSS+G   + +     L  LQ+
Sbjct: 128 GIPNTPYIFLSENSQQAYELSEQAFEKWGSVFVKAARQGSSVGCYKVTE-----LSQLQA 182

Query: 158 ---SSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYSSLN 210
              +++ + DQ+L+EQ V   EL       D  L +T   EI  P+  FYSYE KYS+  
Sbjct: 183 ALDNAFGYSDQVLVEQAVKPRELEVAAYELDGELHITAPGEIIAPEDAFYSYEEKYST-- 240

Query: 211 STHVLPAKIPLDIYKE----VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
            +H     +  D+  E    ++  +      +  R +SR DF   P S +++  E+N  P
Sbjct: 241 ESHSTTKVVATDLNDEQLAVIRTSSEKVFTQMRLRHLSRIDFFLTP-SGEIYLNEVNTFP 299

Query: 267 GMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           GMTP+S+FP+M    G+SF   L      A+C++
Sbjct: 300 GMTPISMFPKMLENNGHSFAAFL------ANCVK 327


>gi|329944757|ref|ZP_08292836.1| D-ala D-ala ligase protein [Actinomyces sp. oral taxon 170 str.
           F0386]
 gi|328529893|gb|EGF56783.1| D-ala D-ala ligase protein [Actinomyces sp. oral taxon 170 str.
           F0386]
          Length = 315

 Score =  115 bits (287), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 88/297 (29%), Positives = 146/297 (49%), Gaps = 21/297 (7%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59
           +AVL GG+S ER++SL SG   A  L+  G  V  +D+D R++G  L    PD+ + ++H
Sbjct: 8   IAVLAGGLSHERDISLRSGHRVAQVLKHLGHTVLVLDIDARTIG-SLKTFGPDVVWPLVH 66

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV------ 113
           G  GEDG +Q +L  L +PY  +       +  K  +K  V + GV + P  L       
Sbjct: 67  GGPGEDGGLQNMLIALGLPYVGTHSDGCQRASFKPTAKASVRTGGV-ITPDSLTLPHSYF 125

Query: 114 ------NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL 167
                    T+ + HL   P V+KP +GGS LG+        +   ++   +++  ++ L
Sbjct: 126 SQLGAQEVLTVVAGHL-GLPVVVKPHQGGSGLGVSYASTADELRSAMVACFAYD--ERAL 182

Query: 168 IEQYVDGIELTCGVM--GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
           IE+YV G EL   V+  G+    +  + V     Y ++ +Y+   S + +PA++   + +
Sbjct: 183 IERYVPGTELAVSVVDTGEGPRALPPVEVVTDGQYDFDARYNPGRSEYFVPARLNDSVIE 242

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAG 282
            V+  A   H  +G   +SR+D + D      F +++NV PGMT  S+ P  A   G
Sbjct: 243 MVKSTAVTVHSTLGLGNLSRTDLILDEEGTPWF-IDVNVIPGMTETSLLPIAAKAEG 298


>gi|291302440|ref|YP_003513718.1| D-alanine/D-alanine ligase [Stackebrandtia nassauensis DSM 44728]
 gi|290571660|gb|ADD44625.1| D-alanine/D-alanine ligase [Stackebrandtia nassauensis DSM 44728]
          Length = 364

 Score =  114 bits (286), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 79/254 (31%), Positives = 132/254 (51%), Gaps = 14/254 (5%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+ F VLHG +GEDG +Q +LE+ ++PY  S +L+SA SMDK   K+++ + G+PV   +
Sbjct: 104 DVVFPVLHGAYGEDGTIQGLLEMADVPYVGSNVLSSAASMDKDFMKRLLKAEGIPVGDYV 163

Query: 112 LVNR---FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168
           ++ R    +   +  +  P  +KP + GSSLGI  +       LD   +++     ++L+
Sbjct: 164 VLKRDQTLSEAEKQRLGLPVFVKPSRAGSSLGISKVTDWDD--LDKAIATARAVDPKVLV 221

Query: 169 EQYVDGI-ELTCGVM---GDASLDVT---EIAVPKSD-FYSYELKYSSLNSTHVLPAKIP 220
           E    G+ EL CGV+      + D T   E+ +  ++ ++ +E KY +  S + L   +P
Sbjct: 222 EAAFTGVRELECGVLEREDGGAPDTTPPFEVLIAGTEGWFDFEAKYLASGSPYDLAPDLP 281

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280
               + ++ LA      + C  ++R DF F      V+  EIN  PG+TP S  P   A 
Sbjct: 282 EGTAERIRELAARVFTVMDCSDLARVDF-FLASDGTVYVNEINTMPGLTPGSGVPVAWAN 340

Query: 281 AGYSFRELLLWMVE 294
           AG  + EL+  +V 
Sbjct: 341 AGVDYPELVARLVR 354


>gi|300726251|ref|ZP_07059704.1| D-ala D-ala ligase [Prevotella bryantii B14]
 gi|299776448|gb|EFI73005.1| D-ala D-ala ligase [Prevotella bryantii B14]
          Length = 331

 Score =  114 bits (286), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 90/330 (27%), Positives = 154/330 (46%), Gaps = 43/330 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40
           +A++ GG SSE +VS+ SG+   S  +   + V  +D+                    D 
Sbjct: 8   IAIVCGGDSSEHDVSMRSGEGLYSFFDKEKYNVYIVDIKGLSWNVNFDNGETAPIDKNDF 67

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           S       +K D A+  +HG  GE+G +Q   +L+ +PY+ SG+L  A++ DK      +
Sbjct: 68  SFMRDGKVIKFDYAYITIHGQPGENGPLQGYFDLIHLPYSTSGVLVEAMTFDKYVLNNYL 127

Query: 101 SSCGVPVCPSILVNRFTMDSQHLISP----PYVIKPLKGGSSLGIIVIKK-DQSIP---L 152
              GV V  S+L+ R     +  I+     P  +KP   GSS G+  +K  DQ  P   +
Sbjct: 128 RGFGVNVADSVLIRRDEEFDEEAIAARLGMPCFVKPAADGSSFGVSKVKNADQLAPALRV 187

Query: 153 DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV----TEIAVPKSDFYSYELKYSS 208
             ++ S      + ++E ++DGIE++ G+   A   V    TE+ V  ++F+ Y  KY+ 
Sbjct: 188 AFMECS------EAMVEGFMDGIEISQGIYKTADKTVVFPATEV-VTNNEFFDYNAKYNG 240

Query: 209 LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL---SRKVFWLEINVQ 265
                + PA++  +  ++V       +  +   GI R D++       + K+  LEIN  
Sbjct: 241 -QVKEITPARLSPETAEKVAAETSRIYDILHANGIIRIDYIISKDADGNDKINMLEINTT 299

Query: 266 PGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           PGMT  S  P+    AG   +++L  +VE+
Sbjct: 300 PGMTVTSFIPQQVRAAGLDIKDVLSDIVEN 329


>gi|11345403|gb|AAG34691.1|AF310956_6 D-alanine:D-lactate ligase [Enterococcus faecium]
 gi|1730460|emb|CAB05883.1| D-alanine:D-alanine ligase-related protein [Enterococcus faecium]
 gi|1763668|gb|AAB39760.1| D-alanine:D-alanine ligase-related protein [Enterococcus faecium]
 gi|33336052|gb|AAQ12894.1| D-alanine:D-lactate ligase [Enterococcus faecium]
          Length = 342

 Score =  114 bits (286), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 75/245 (30%), Positives = 122/245 (49%), Gaps = 10/245 (4%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+AF VLHG  GEDG +Q +  L  IPY    I +SA  MDK  +  +  + G+ V    
Sbjct: 91  DVAFPVLHGKCGEDGAIQGLFVLSGIPYVGCDIQSSAACMDKSLAYILTKNAGIAVPEFQ 150

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
           ++++        ++ P  +KP + GSS G+  +   +   L+    ++  +  ++LIEQ 
Sbjct: 151 MIDKGDKPEAGALTYPVFVKPARSGSSFGLTKVNGTEE--LNAAIEAAGQYDGKILIEQA 208

Query: 172 VDGIELTCGVMGDAS----LDVTEIAVPKSDFYSY---ELKYSSLNSTHVLPAKIPLDIY 224
           + G E+ C VMG+       +V +I +    F  +   E +  S N+   +PA IP++  
Sbjct: 209 ISGCEVGCAVMGNEDDLIVGEVDQIRLSHGIFRIHQENEPEKGSENAMITVPADIPVEER 268

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
             VQ  A   ++ +GCRG++R D LF      +   E+N  PG T  S +P M A AG +
Sbjct: 269 NRVQETAKKVYRVLGCRGLARVD-LFLQEDGGIVLNEVNTLPGFTSYSRYPRMMAAAGIT 327

Query: 285 FRELL 289
              L+
Sbjct: 328 LPALI 332


>gi|170739250|ref|YP_001767905.1| D-alanyl-alanine synthetase A [Methylobacterium sp. 4-46]
 gi|190359166|sp|B0UB90|DDL_METS4 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|168193524|gb|ACA15471.1| D-alanine--D-alanine ligase [Methylobacterium sp. 4-46]
          Length = 382

 Score =  114 bits (286), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 95/341 (27%), Positives = 158/341 (46%), Gaps = 54/341 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL-------------VLA 47
           +A+L GG S+E EVS+ S    A AL+   + V+ I +D+  G               + 
Sbjct: 5   VALLFGGRSAEHEVSIVSAGNVARALDPDRYAVTPIAIDKETGAWRLCPPLAPGEAPAMV 64

Query: 48  HLKPDLAF-------------------------NVLHGNFGEDGLVQAILELLEIPYTHS 82
              P +AF                          VLHG  GEDG VQ  L+L  +PY  S
Sbjct: 65  REGPRVAFLPGGGGRLAVLGETASVSEPFDVVVPVLHGPNGEDGTVQGALDLAGVPYVGS 124

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVN-----RFTMDSQHLISPPYVIKPLKGGS 137
           G++ SA +MDK  +K+++   G+P+ P ++        +T   + L S    +KP   GS
Sbjct: 125 GVIGSAAAMDKDVAKRLMRDAGLPIVPYLVAGPRRGVAYTEAVEALESRTLFVKPANMGS 184

Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVT-----E 191
           S+G+  +        D   + ++ + +++LIE+ V    E+   V+  A  +V      E
Sbjct: 185 SVGVSRVADAGQ--FDQALAHAFAYDEKILIERAVPRAREIEFAVLETAEGEVRVSPPGE 242

Query: 192 IAVPKS-DFYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
           IA   +  FY Y+ KY   +   +L PA +   + + +  LA  A +A+ C G++R D  
Sbjct: 243 IAPAAAHGFYGYDAKYVDPDGAALLIPASLAPALAERMGGLAARAFEALACAGLARVDLF 302

Query: 250 FDPLSRK-VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
            DP   + +F  E+N  PG T +S++P++   AG +   L+
Sbjct: 303 LDPDDPEGIFVNEVNTLPGFTAISMYPKLWDAAGLAPPALM 343


>gi|70725955|ref|YP_252869.1| D-alanyl-alanine synthetase A [Staphylococcus haemolyticus
           JCSC1435]
 gi|123660710|sp|Q4L7W2|DDL_STAHJ RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|68446679|dbj|BAE04263.1| D-alanine-D-alanine ligase [Staphylococcus haemolyticus JCSC1435]
          Length = 356

 Score =  114 bits (286), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 75/260 (28%), Positives = 132/260 (50%), Gaps = 21/260 (8%)

Query: 50  KP-DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
           KP D  F +LHG  GEDG +Q + E+L++PY  +G+LA++ SMDK+  KQ+    G+P  
Sbjct: 86  KPYDAIFPLLHGPNGEDGTIQGLFEVLDLPYVGNGVLAASSSMDKLVMKQLFEHRGLPQL 145

Query: 109 PSILVNRFTMDS---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
           P I   R   +          +  ++ P  +KP   GSS+GI     +  +   + ++  
Sbjct: 146 PYISFLRSEYEKYEGNIIKLVKDKLTYPVFVKPANLGSSVGISKCNNEDELKSGIEEAFQ 205

Query: 160 WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKS-----DFYSYELKYSSLNSTHV 214
           ++   +L+IEQ ++  E+   V+G+   D  E   P        FY Y+ KY     +  
Sbjct: 206 FDR--KLVIEQGINAREVEVAVLGN---DYPETTWPGEVIKDVAFYDYKSKYKDGKISLQ 260

Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274
           +PA++  ++   ++ +A  A +A  C G+ R+DF F     ++F  E N  PG T  S++
Sbjct: 261 IPAELDEEVQMTLRNMALEAFKATDCSGLVRADF-FVTEDNQIFINETNAMPGFTAFSMY 319

Query: 275 PEMAAYAGYSFRELLLWMVE 294
           P +    G S+ +L+  +++
Sbjct: 320 PSLWENMGLSYSDLITKLID 339


>gi|325568401|ref|ZP_08144768.1| D-alanine-D-alanine ligase [Enterococcus casseliflavus ATCC 12755]
 gi|325158170|gb|EGC70323.1| D-alanine-D-alanine ligase [Enterococcus casseliflavus ATCC 12755]
          Length = 364

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 91/334 (27%), Positives = 154/334 (46%), Gaps = 46/334 (13%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS----VGLVL--AHLKPD---- 52
           +L GG S+E EVSL S  +  +A+    ++V  + + +      G +L  A   PD    
Sbjct: 5   LLYGGRSAEHEVSLLSAFSVVNAVYYNYYQVQLVMITKEGRWLKGPLLSEAPTSPDTLAL 64

Query: 53  --------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
                               + F +LHG  GEDG +Q  LE + +PY  +G+L SA  MD
Sbjct: 65  TNEETKGEEISPGAIYEEDAIVFPLLHGPNGEDGTIQGFLETIGMPYVGAGVLTSACGMD 124

Query: 93  KMRSKQVVSSCGVPVCP--SILVNRFTMDSQHLISP-------PYVIKPLKGGSSLGIIV 143
           K+ +K ++ + G+P  P   +L N +  + + +          P  +KP   GSS+GI  
Sbjct: 125 KIMTKYILQAAGIPQVPYVPVLKNAWKENPKKIFDQCEGSLLYPMFVKPANMGSSVGI-- 182

Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFY 200
            K +    L      ++ +  + ++EQ ++  E+   V+G+  +  T   EI V    FY
Sbjct: 183 SKAENREELQNALQEAYRYDTRAIVEQGIEAREIEVAVLGNEDVRTTMPGEI-VKDVAFY 241

Query: 201 SYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260
            Y  KY        +PA+IP +   + Q  A  A+  +G  G+SR DF F     ++F  
Sbjct: 242 DYNSKYIDNRIEMQIPAQIPEETQAKAQEFAKKAYTMLGGSGLSRCDF-FLTNKNELFLN 300

Query: 261 EINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           E+N  PG T  S++P +    G  + +L+  +++
Sbjct: 301 ELNTMPGFTEFSMYPLLWEKTGLPYGDLIEELIQ 334


>gi|222159959|gb|ACM47313.1| VanA [Staphylococcus haemolyticus]
          Length = 249

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 76/237 (32%), Positives = 119/237 (50%), Gaps = 10/237 (4%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+AF+ LHG  GEDG +Q + EL  IP+    I +SA+ MDK  +  V  + G+      
Sbjct: 16  DVAFSALHGKSGEDGSIQGLFELSGIPFVGCDIQSSAICMDKSLTYIVAKNAGIATPAFW 75

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
           ++N+         + P  +KP + GSS G  V K + +  LD    S+  +  ++LIEQ 
Sbjct: 76  VINKDDRPVAATFTYPVFVKPARSGSSFG--VKKVNSADELDYAIESARQYDSKILIEQA 133

Query: 172 VDGIELTCGVMGD-ASLDVTEIAVPKSDFYSY------ELKYSSLNSTHVLPAKIPLDIY 224
           V G E+ C V+G+ A+L V E+   +  +  +      E +  S N+   +PA +  +  
Sbjct: 134 VSGCEVGCAVLGNSAALVVGEVDQIRLQYGIFRIHQEVEPEKGSENAVITVPADLSAEER 193

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYA 281
             +Q  A   ++A+GCRG++R D       R V   E+N  PG T  S +P M A A
Sbjct: 194 GRIQETAKKIYKALGCRGLARVDMFLQDNGRIVLN-EVNTLPGFTSYSRYPRMMAAA 249


>gi|295099013|emb|CBK88102.1| D-alanine--D-alanine ligase [Eubacterium cylindroides T2-87]
          Length = 347

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 88/334 (26%), Positives = 150/334 (44%), Gaps = 50/334 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL----------AHLK 50
           + V+ GG SSE  VSL S  +    + +  + ++ I +D++    +           H  
Sbjct: 4   LGVVFGGQSSEYSVSLHSVASFLRQIHNEKYDITMIGIDQNGQFYVYDGSIDDIEHDHWI 63

Query: 51  P------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           P                        D  F VLHG  GEDG VQ +LEL+ I Y    +++
Sbjct: 64  PQATKAAWVHKGIMALDGKNTVKELDCVFPVLHGKNGEDGCVQGLLELMNIHYVGCDVMS 123

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVN------RFTMDSQHLISPPYVIKPLKGGSSLG 140
           SA+SMDK     +     +P    + +        F M  Q  IS P+++KP   GSS G
Sbjct: 124 SAISMDKEIMHILCDEANIPCADYVCLKANEENPSFEM-IQEKISLPWIVKPCNAGSSYG 182

Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD-----ASLDVTEIAVP 195
           +  ++  +        +  ++   ++L+E+ ++G E+ C VMG+      S D  +I+  
Sbjct: 183 VHKVENKEEFEEACKDAFFYDGRGKILVEKAIEGFEIGCAVMGNEEVFTGSCDEIQIS-- 240

Query: 196 KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255
               + +E KY    +  + PA+I  + + + + LA   ++A+ C G++R D    P  +
Sbjct: 241 -GGIFDFEGKYEMKGAEIICPARIDEETFAKAKALAAKTYKAMNCCGMARVDMFVTP-QK 298

Query: 256 KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           +V   E+N  PG T  S +P M   AG  F +L+
Sbjct: 299 EVILNELNTIPGFTATSRYPSMMKEAGIEFGDLI 332


>gi|119717708|ref|YP_924673.1| D-alanine--D-alanine ligase [Nocardioides sp. JS614]
 gi|119538369|gb|ABL82986.1| D-alanine--D-alanine ligase [Nocardioides sp. JS614]
          Length = 311

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 100/306 (32%), Positives = 151/306 (49%), Gaps = 25/306 (8%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI---------DVDRSVGLVLA---H 48
           +AV+ GG S E +VSL+S  A A+ L+   + V ++         D DR VGL  A    
Sbjct: 5   VAVVGGGRSCEHDVSLASAAAVAAGLDPHRYDVVRLTIGRDGAWRDGDRPVGLAAAVEVL 64

Query: 49  LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
            + D+ F V HG  GEDG + A+ EL  +PY  SG+ A AL+MDK  +K V ++ G+   
Sbjct: 65  RRCDVVFPVAHGPHGEDGTLAALCELAGVPYVGSGVRAGALAMDKWATKLVAAALGIATA 124

Query: 109 PSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168
              LV   T  +Q   + P V+KP+  GSS+G+  + +  S+P  L  + + +  D+ L+
Sbjct: 125 AGRLVTAATA-TQETWTGPVVVKPVAAGSSIGVAFVSEPASLPPALATALALD--DRALV 181

Query: 169 EQYVDGIELTCGVMGDASLDVTEIAVP-----KSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           E+ V G E+   V+  A  D   +A P         + ++ KY       V PA +    
Sbjct: 182 EELVTGREIDVAVLRRA--DGAVVASPPLEIVADGLFDFDAKYGGRADFRV-PAVLDEVD 238

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283
            K ++  A   + A+GC G++R DF            E+N  PGMT  S  P M A AG 
Sbjct: 239 AKALEGAAVATYDALGCSGVARVDFFL--TDTGPVLNEVNTVPGMTEHSQVPRMFAAAGL 296

Query: 284 SFRELL 289
            + +LL
Sbjct: 297 PYPDLL 302


>gi|26991036|ref|NP_746461.1| D-alanine--D-alanine ligase A [Pseudomonas putida KT2440]
 gi|39931111|sp|Q88EV6|DDLA_PSEPK RecName: Full=D-alanine--D-alanine ligase A; AltName:
           Full=D-Ala-D-Ala ligase A; AltName: Full=D-alanylalanine
           synthetase A
 gi|24986067|gb|AAN69925.1|AE016631_4 D-alanine--D-alanine ligase A [Pseudomonas putida KT2440]
          Length = 352

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 98/339 (28%), Positives = 160/339 (47%), Gaps = 48/339 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS------------VGLV--- 45
           +A++ GG SSE  V+L S     +AL   G +V  + +DR              G V   
Sbjct: 6   IALVFGGRSSEHSVALRSAATIHAALMALGHRVHCVGIDREGNWRYQGEPCQFPGAVDRS 65

Query: 46  --LAHLKP-------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84
             L  ++P                   DL F  LHG +GEDG +Q +  +  +P   SG+
Sbjct: 66  APLISIRPGHRSLSYTTQESGTVEIGIDLLFPALHGRWGEDGTIQGLAAMCGLPCVGSGV 125

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVNR---FTMDSQHLISPPYVIKPLKGGSSLGI 141
           L SA++MDK  +K++V S G+ V P + +N    +    + L S    +KP   GSS+G 
Sbjct: 126 LGSAMAMDKDVTKRMVQSAGLVVVPWLAMNSMRPWEELVECLGSSTLFVKPATSGSSIG- 184

Query: 142 IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM----GDASLDVTEIAVPKS 197
            V +   ++      + +     ++L+E  V G E+ CGV+    G  +  V EI   + 
Sbjct: 185 -VSRVSNALEYAAAFAIAAREDTKVLVEAAVCGREIECGVLELEEGLMASVVGEIIKKEG 243

Query: 198 D-FYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255
             +Y Y+ KY S + T + +P+ +P DI   +Q L+  A + +  +G +R DF       
Sbjct: 244 HAYYDYQAKYDSNSVTGLRVPSLLPPDIVARIQALSVQAFRCLELKGYARVDFFLTE-EG 302

Query: 256 KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           ++   EIN  PG T  S++P+M   +GY   +L+  +VE
Sbjct: 303 EIILNEINTLPGFTSASMYPKMFECSGYPPPKLVGALVE 341


>gi|260777626|ref|ZP_05886519.1| D-alanine--D-alanine ligase [Vibrio coralliilyticus ATCC BAA-450]
 gi|260605639|gb|EEX31924.1| D-alanine--D-alanine ligase [Vibrio coralliilyticus ATCC BAA-450]
          Length = 329

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 103/329 (31%), Positives = 156/329 (47%), Gaps = 41/329 (12%)

Query: 3   VLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDV--------------DRSVGLVLA 47
           +L GG S+E EVSL S     S LE    F+V ++++              D + G + +
Sbjct: 8   LLCGGGSAEHEVSLVSADFVQSQLELTPDFEVIRVEMKPEGWYQGEQLVYLDTNAGTLNS 67

Query: 48  HL---KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCG 104
            +   K D     +HG  GE G +Q++LEL  IPY   G  AS  S +K+ SK    +  
Sbjct: 68  EVNATKLDFVVPCIHGFPGETGDIQSMLELTGIPYLGCGPEASTNSFNKITSKLWYDALS 127

Query: 105 VPVCPSILV---NRFTMDSQHLISPPY---VIKPLKGGSSLGII-VIKKDQSIPLDLLQS 157
           +P  P I +   N+   D        +    +K  + GSS+G   V +KDQ   L    +
Sbjct: 128 IPNTPYIFLSENNKQAYDQSLAAFEQWGSVFVKAARQGSSVGCYKVTEKDQ---LQKAIN 184

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYS--SLNS 211
            ++ + DQ+L+E+ V   EL          L VT   EI  P+  FYSYE KYS  S ++
Sbjct: 185 DAFGYSDQVLVEKAVKPRELEVAAYEYKGQLHVTPPGEIKAPEDTFYSYEEKYSADSHST 244

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271
           T V  + +  D    +Q+ +    + +  R +SR DF   P    V+  E+N  PGMTP+
Sbjct: 245 TDVEASNLTDDQRLIIQQASEKVFKQMRLRHLSRIDFFLTP-EGNVYLNEVNTFPGMTPI 303

Query: 272 SIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           S+FP+M  ++G  F E L      A C++
Sbjct: 304 SMFPKMVEHSGLKFSEFL------ADCVK 326


>gi|67479916|gb|AAY67966.1| truncated D-alanine:D-alanine ligase 2 [Enterococcus gallinarum]
          Length = 305

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 85/295 (28%), Positives = 137/295 (46%), Gaps = 52/295 (17%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID----------------------- 37
           + VL GG+S ER+VSLSSG   A ALE+ G +   +D                       
Sbjct: 3   IVVLAGGLSHERDVSLSSGGQIAMALEERGHRALLLDLYQGNNEKTFEAAYSIQKQEENP 62

Query: 38  ----VDRS-----------------VGLVLAHL--KPDLAFNVLHGNFGEDGLVQAILEL 74
               VD +                 +G  +  L    D  F  LHG  GE+G +QA  +L
Sbjct: 63  YDYFVDENEPDIEKLIQKNSSQKNVMGKNVVELCRDADFCFIALHGGIGENGKLQAFFDL 122

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLK 134
             I Y+ S    S L+MDK  +KQ++    +P  P   +  +    +   S P V+KP+ 
Sbjct: 123 YGIRYSGSHYKGSLLAMDKDIAKQLMKLNDIPT-PKWQI--WEQGQEVYYSSPCVVKPID 179

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194
            GSS+G+ +++  +     L ++  +N   +++IEQ ++G E + GV+GD  L   EI +
Sbjct: 180 NGSSIGVEIVENKEQFSKALKKAEKYN--SKVMIEQKIEGREFSVGVLGDNVLPAIEI-I 236

Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
           P+  FY+YE KY    +  + PA I  D+   +  +  L ++ +G    SR D++
Sbjct: 237 PQQGFYNYENKYQKGATEEITPADISSDLATRLSEMTVLVNKVLGLSIYSRVDYI 291


>gi|11345392|gb|AAG34683.1|AF310953_1 ligase VanB2 [Enterococcus faecium]
          Length = 342

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 74/245 (30%), Positives = 122/245 (49%), Gaps = 10/245 (4%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+AF VLHG  GEDG +Q +  L  IPY    I +SA  MDK  +  +  + G+ V    
Sbjct: 91  DVAFPVLHGKCGEDGAIQGLFVLSGIPYVGCDIQSSAACMDKSLAYILTKNAGIAVPEFQ 150

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
           ++++        ++ P  +KP + GSS G+  +   +   L+    ++  +  ++LIEQ 
Sbjct: 151 MIDKGDKPEAGALTYPVFVKPARSGSSFGLTKVNGTEE--LNAAIEAAGQYDGKILIEQA 208

Query: 172 VDGIELTCGVMGDAS----LDVTEIAVPKSDFYSY---ELKYSSLNSTHVLPAKIPLDIY 224
           + G E+ C VMG+       +V +I +    F  +   E +  S N+   +PA IP++  
Sbjct: 209 ISGCEVGCAVMGNEDDLIVGEVDQIRLSHGIFRIHQENEPEKGSENAMITVPADIPVEER 268

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
             VQ  A   ++ +GCRG++R D LF      +   E+N  PG T  S +P M A AG +
Sbjct: 269 NRVQETAKKVYRVLGCRGLARVD-LFLQEDGGIVLNEVNTLPGFTSYSRYPRMMAAAGIT 327

Query: 285 FRELL 289
              ++
Sbjct: 328 LPAMI 332


>gi|116493715|ref|YP_805449.1| D-alanine-D-alanine ligase related ATP-grasp enzyme [Lactobacillus
           casei ATCC 334]
 gi|191636959|ref|YP_001986125.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)
           (D-Ala-D-Ala ligase) [Lactobacillus casei BL23]
 gi|227533371|ref|ZP_03963420.1| D-alanine--D-alanine ligase [Lactobacillus paracasei subsp.
           paracasei ATCC 25302]
 gi|239630957|ref|ZP_04673988.1| D-alanine-D-alanine ligase [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|301065279|ref|YP_003787302.1| D-alanine-D-alanine ligase-like ATP-grasp enzyme [Lactobacillus
           casei str. Zhang]
 gi|122264830|sp|Q03CR5|DDL_LACC3 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|229485960|sp|B3W7C1|DDL_LACCB RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|116103865|gb|ABJ69007.1| D-alanine--D-alanine ligase [Lactobacillus casei ATCC 334]
 gi|190711261|emb|CAQ65267.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)
           (D-Ala-D-Ala ligase) [Lactobacillus casei BL23]
 gi|227189006|gb|EEI69073.1| D-alanine--D-alanine ligase [Lactobacillus paracasei subsp.
           paracasei ATCC 25302]
 gi|239527240|gb|EEQ66241.1| D-alanine-D-alanine ligase [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|300437686|gb|ADK17452.1| D-alanine-D-alanine ligase related ATP-grasp enzyme [Lactobacillus
           casei str. Zhang]
 gi|327380987|gb|AEA52463.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus casei LC2W]
 gi|327384162|gb|AEA55636.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus casei BD-II]
          Length = 357

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 91/342 (26%), Positives = 159/342 (46%), Gaps = 53/342 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-------DRSVGLV-------- 45
           + VL GG S+ER VS+SSG    +AL   G + + ID+        ++V  V        
Sbjct: 3   IVVLAGGRSTERNVSISSGYRITNALRQKGQQATFIDLFLGYDLEGKTVEQVFDDANTSK 62

Query: 46  -------------LAHLKPD------------------LAFNVLHGNFGEDGLVQAILEL 74
                        +  L+PD                  + F  LHG  GE+G VQA+ ++
Sbjct: 63  DLNISDAILTDEDINKLRPDGSTQLFGPNVMAICKAADIVFLALHGGDGENGKVQAVFDI 122

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL-ISPPYVIKPL 133
             + YT SG LAS ++M+K+ SK+V+   G+         R     Q +    P V+KP 
Sbjct: 123 NGVKYTGSGPLASGITMNKVFSKEVMLYHGIQTSGFKEFKRDQGPKQTVPFDFPVVVKPT 182

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
            GGSS+G  +I   + +   L     +   +  ++E++  G E + GV+   +    EI 
Sbjct: 183 SGGSSVGTHIIHNQEELESGL--EDVFRFDNSAIVEEFTPGREFSLGVVNGHAYSAIEIK 240

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
           V +S +Y ++ K+ +  +  + P K +  D+++ ++ +A      +G +   R DF  + 
Sbjct: 241 V-RSGWYDFKHKFQAGYTDFITPPKDLDEDVHQAMKDVAVQTMDVLGLQNYGRIDFFAN- 298

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             + V+ +E N  PGMTP+S+ P+ A   G  + +L++ +V 
Sbjct: 299 -EKGVWVIEANNLPGMTPLSLLPQEAEADGVDYGDLVMDIVN 339


>gi|332978578|gb|EGK15284.1| D-alanine-D-alanine ligase A [Psychrobacter sp. 1501(2011)]
          Length = 384

 Score =  114 bits (284), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 90/350 (25%), Positives = 167/350 (47%), Gaps = 63/350 (18%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD--------------------- 39
           +A+++GG S E  VS++SG +  + ++   F V  I +D                     
Sbjct: 14  VAIILGGQSPEHAVSINSGCSLLNHIDRNRFNVEAIYIDIEGRWWQYPHQESYTSDIFTI 73

Query: 40  ---------------RSVGLV----LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYT 80
                           +  LV    L  +  D+ F+++HG+ GEDG +Q + E+  +PY 
Sbjct: 74  ETAQAIAQRCVIIPDETYQLVKLPSLEKIACDVCFSIVHGSTGEDGKLQGVFEVANLPYV 133

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISP------PYVIKP 132
            + +  SA+ M+K+  K ++++  +P     +V+   +  D+  LI        P  +KP
Sbjct: 134 GTDVAGSAVGMNKVIMKDILNANDIPTANYRIVDARSWKADAASLIEDARSLKLPIFVKP 193

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSS---SWNHGDQLLIEQYVD-GIELTCGVMGDASLD 188
              GSS+GI  +        D LQS+   +     Q+L+E+ +    EL   V+G+ + +
Sbjct: 194 ANTGSSVGISKVDS-----YDDLQSAIEVALKFDPQVLVEEGITPARELEVAVLGNHNPE 248

Query: 189 VTEIAV--PKSDFYSYELKYSSLNSTHVL--PAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244
           V+ I    P   FY Y  KY  LN T  L  PA +  ++  +++ +A   ++ +G +G+S
Sbjct: 249 VSCIGEINPPDGFYDYASKY--LNDTAKLSYPATVAPEVEAKMRDIAVKTYKVLGLKGLS 306

Query: 245 RSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           R DFL D  + + + +E+N  PG T +S++P++   +G  +  L+  ++E
Sbjct: 307 RVDFLLDQATNEPYIIEVNTLPGFTNISMYPKLWDVSGKPYSTLITDLIE 356


>gi|148546760|ref|YP_001266862.1| D-alanine--D-alanine ligase [Pseudomonas putida F1]
 gi|148510818|gb|ABQ77678.1| D-alanine--D-alanine ligase [Pseudomonas putida F1]
          Length = 352

 Score =  113 bits (283), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 98/339 (28%), Positives = 160/339 (47%), Gaps = 48/339 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS------------VGLV--- 45
           +A++ GG SSE  V+L S     +AL   G +V  + +DR              G V   
Sbjct: 6   IALVFGGRSSEHSVALRSAATIHAALMALGHRVHCVGIDREGNWRYQGEPCQFPGAVDRS 65

Query: 46  --LAHLKP-------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84
             L  ++P                   DL F  LHG +GEDG +Q +  +  +P   SG+
Sbjct: 66  APLISIRPGHRSLSYTTQESGTVEIGIDLLFPALHGRWGEDGTIQGLAAMCGLPCVGSGV 125

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVNR---FTMDSQHLISPPYVIKPLKGGSSLGI 141
           L SA++MDK  +K++V S G+ V P + +N    +    + L S    +KP   GSS+G 
Sbjct: 126 LGSAMAMDKDVTKRMVQSAGLVVGPWLALNSMRPWEELVECLGSSTLFVKPATSGSSIG- 184

Query: 142 IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM----GDASLDVTEIAVPKS 197
            V +   ++      + +     ++L+E  V G E+ CGV+    G  +  V EI   + 
Sbjct: 185 -VSRVSNALEYAAAFAIAAREDTKVLVEAAVCGREIECGVLELEEGLMASVVGEIIKKEG 243

Query: 198 D-FYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255
             +Y Y+ KY S + T + +P+ +P DI   +Q L+  A + +  +G +R DF       
Sbjct: 244 HAYYDYQAKYDSNSVTGLRVPSLLPPDIVARIQALSVQAFRCLELKGYARVDFFLTE-EG 302

Query: 256 KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           ++   EIN  PG T  S++P+M   +GY   +L+  +VE
Sbjct: 303 EIILNEINTLPGFTSASMYPKMFECSGYPPPKLVGALVE 341


>gi|291302804|ref|YP_003514082.1| D-alanine/D-alanine ligase [Stackebrandtia nassauensis DSM 44728]
 gi|290572024|gb|ADD44989.1| D-alanine/D-alanine ligase [Stackebrandtia nassauensis DSM 44728]
          Length = 346

 Score =  113 bits (283), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 96/336 (28%), Positives = 156/336 (46%), Gaps = 47/336 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALE-----------------------DAGFKVSQ-- 35
           + ++ GG   E  VS+ S +  A  L+                       D G++ ++  
Sbjct: 6   VGIVFGGACEENPVSVKSAQEVARNLDTDKYEVLYIGITKTGDWLLCDSPDTGWETTKNR 65

Query: 36  ---IDVDRSVG--LVLAH-----LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
              +  DR+V   LVL +     ++ DL F VLHG  GEDG +Q +LEL  IPY    + 
Sbjct: 66  PAVLSPDRNVHGLLVLENGKYETIRLDLVFPVLHGKLGEDGAIQGLLELSGIPYVGCDVQ 125

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP-PYVIKPLKGGSSLGIIVI 144
            SAL MDK  +  V    G+   P   +     D +    P P V+KP + GSS G+  +
Sbjct: 126 TSALCMDKSLTYLVAQHAGI-TTPQYWIVTANKDIEPDRLPYPVVVKPARSGSSFGVNKV 184

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD----ASLDVTEIAVPKSDFY 200
             ++ +   +   ++  +  ++LIE+ + G E+ C ++G+     + +V +I V +  F 
Sbjct: 185 THEEELQTAI--DTARQYDSKVLIEEAIVGTEVGCSILGERYGLVAGEVDQINVSQGIFR 242

Query: 201 SYEL---KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
            ++    +  S NST  +PA I L+    VQ  A   ++A+G +G++R DF        V
Sbjct: 243 IHQENNPESGSENSTITVPADISLESRSLVQETAKTLYRALGGKGLARIDFFLKEDGTLV 302

Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
              E+   PGMT  S +P M A AG    +L+  MV
Sbjct: 303 LN-EVQTLPGMTSYSRYPRMMAAAGIPMADLIDRMV 337


>gi|323497226|ref|ZP_08102246.1| D-alanyl-alanine synthetase A [Vibrio sinaloensis DSM 21326]
 gi|323317801|gb|EGA70792.1| D-alanyl-alanine synthetase A [Vibrio sinaloensis DSM 21326]
          Length = 330

 Score =  113 bits (283), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 101/331 (30%), Positives = 156/331 (47%), Gaps = 44/331 (13%)

Query: 3   VLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDV---------------DRSVGLVL 46
           ++ GG SSE EVSL S     S LE +  F V ++++               D + G + 
Sbjct: 8   LICGGGSSEHEVSLLSANFIQSQLELNPNFNVVRVEMKSDGWYTADGTLAYLDTNSGTLN 67

Query: 47  ---AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103
              A +K D     +HG  GE G +Q++LEL  IPY   G  AS  S +K+ SK    + 
Sbjct: 68  TDNASIKLDFVVPCIHGYPGETGDIQSMLELSAIPYLGCGPEASTNSFNKITSKLWYDAL 127

Query: 104 GVPVCPSILVNRFTMDSQHLISPPYV--------IKPLKGGSSLGIIVIKKDQSIPLDLL 155
           G+P  P + ++  + D+Q L +            +K  + GSS+G   +     I   L 
Sbjct: 128 GIPNTPYVFLS--SNDAQALDAAEKAFEKWGAIFVKAARQGSSVGCYKVTNVSDIQQAL- 184

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKY--SSL 209
              ++++ DQ+LIEQ V   EL       +  L V+   EI  P+  FY+YE KY  SS 
Sbjct: 185 -DDAFSYSDQVLIEQAVKPRELEVAAYEFEGKLYVSKPGEIKAPEDAFYTYEEKYSSSSH 243

Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
           ++T V    +     + ++  +      +  R +SR DF   P    ++  E+N  PGMT
Sbjct: 244 STTDVEATNLTEAQLETIRVSSEKVFTQMKLRHLSRIDFFLTP-EGDIYLNEVNTFPGMT 302

Query: 270 PVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           P+S+FP+M  + G+SF E L      A C+R
Sbjct: 303 PISMFPKMLEHNGHSFSEFL------ADCVR 327


>gi|87125524|ref|ZP_01081369.1| D-alanine--D-alanine ligase [Synechococcus sp. RS9917]
 gi|86166824|gb|EAQ68086.1| D-alanine--D-alanine ligase [Synechococcus sp. RS9917]
          Length = 344

 Score =  113 bits (283), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 78/262 (29%), Positives = 129/262 (49%), Gaps = 23/262 (8%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSK---------QVV-- 100
           ++ + VLHG  GEDG VQ +  L+  P+  +G+L SA+ MDK+  K         QV   
Sbjct: 87  EIWYPVLHGPNGEDGTVQGLFTLMAKPFVGAGVLGSAMGMDKLAMKAAFAAAGLAQVAYV 146

Query: 101 ----SSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
               SS       + L+ R   +    +  P  +KP   GSS+GI  ++    +   L  
Sbjct: 147 GLDASSLNNAATRATLLERIETE----LGYPCFVKPANLGSSVGISKVRNRAELERGLAV 202

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK--SDFYSYELKYSSLNSTHV 214
           ++  +H  +L++EQ V   EL C V+G   L  + +   +  +D+Y Y+ KYS   S  +
Sbjct: 203 AAELDH--RLVVEQGVQARELECAVLGVRQLKASVVGEIRFDADWYDYKTKYSDGLSHTL 260

Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274
           +PA I      +VQ +A  A + +G  G +R DF +D    +++  E+N  PG T  S++
Sbjct: 261 IPAPISAARQADVQAMALEACRVLGVVGQARVDFFYDATQERLWINEVNTLPGFTSQSMY 320

Query: 275 PEMAAYAGYSFRELLLWMVEDA 296
           P +   +G    +L+  +VE A
Sbjct: 321 PMLWEASGLPLEDLVAQLVESA 342


>gi|224477067|ref|YP_002634673.1| D-alanyl-alanine synthetase A [Staphylococcus carnosus subsp.
           carnosus TM300]
 gi|254767738|sp|B9DMH1|DDL_STACT RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|222421674|emb|CAL28488.1| putative D-alanine-D-alanine ligase A [Staphylococcus carnosus
           subsp. carnosus TM300]
          Length = 356

 Score =  113 bits (283), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 71/251 (28%), Positives = 132/251 (52%), Gaps = 14/251 (5%)

Query: 55  FNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--SIL 112
           F +LHG  GEDG +Q + E+L++PY  +G+LA++ +MDK+  KQ+ +  G+P  P  S L
Sbjct: 92  FPLLHGPNGEDGTIQGLFEVLDLPYVGNGVLAASSTMDKLVMKQLFAHRGLPQLPYVSFL 151

Query: 113 VNRFTMDSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
            + +     +++         P  +KP   GSS+GI     ++ +   + ++  ++   +
Sbjct: 152 RSEYEKYQSNILKLVKDKLEFPVFVKPANLGSSVGISKCNNEEELKSGIEEAFQFDR--K 209

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD--FYSYELKYSSLNSTHVLPAKIPLDI 223
           L+IEQ ++  E+   V+G+   + T+      D  FY Y+ KY        +PA++  ++
Sbjct: 210 LVIEQGIEAREIEVAVLGNDYPETTQPGEVVKDVAFYDYKSKYLDGKVQLSIPAELDSEV 269

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283
              ++ +A  A +A  C G+ R+DF F     ++F  E N  PG T  S++P +    G 
Sbjct: 270 QTTLRNMAAEAFKATDCSGLLRADF-FVTEDNQIFINETNAMPGFTQYSMYPSLWENMGL 328

Query: 284 SFRELLLWMVE 294
           S+ +L+  ++E
Sbjct: 329 SYADLITKLIE 339


>gi|220901858|gb|ACL82961.1| VanM [Enterococcus faecium]
          Length = 343

 Score =  113 bits (282), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 82/272 (30%), Positives = 133/272 (48%), Gaps = 27/272 (9%)

Query: 26  LEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
           ++D G+++ +IDV                F+VLHG  GEDG +Q + EL  IPY    I 
Sbjct: 81  MQDKGYQIQRIDV---------------VFSVLHGKSGEDGAIQGLFELSGIPYVGCDIQ 125

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145
           +SA+ MDK  +  +  + G+      ++ +    +    + P  +KP + GSS G  V K
Sbjct: 126 SSAVCMDKSLAYIIAKNAGIATPEFQVIYKDDKPAADSFTYPVFVKPARSGSSYG--VNK 183

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD-----VTEIAVPKSDFY 200
            + +  LD     +  +  ++LIEQ V G E+ C V+G+ S D     V +I +    F 
Sbjct: 184 VNSADELDSAIDLARQYDSKILIEQGVLGYEVGCAVLGN-SFDLIVGEVDQIRLQHGIFR 242

Query: 201 SY---ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
            +   E +  S N+T  +PA++  +  + ++  A   ++A+GCRG+SR D       R V
Sbjct: 243 IHQEAEPEKGSENATITVPAELSAEERERIKEAAKNIYKALGCRGLSRVDMFLQDNGRIV 302

Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
              E+N  PG T  S +P M   AG +  EL+
Sbjct: 303 LN-EVNTMPGFTSYSRYPRMMVSAGITIPELI 333


>gi|260559881|ref|ZP_05832060.1| D-alanine:D-lactate ligase [Enterococcus faecium C68]
 gi|260074105|gb|EEW62428.1| D-alanine:D-lactate ligase [Enterococcus faecium C68]
          Length = 342

 Score =  113 bits (282), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 76/245 (31%), Positives = 122/245 (49%), Gaps = 10/245 (4%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+AF VLHG  GEDG +Q +  L  IPY    I +SA  MDK  +  +  + G+ V    
Sbjct: 91  DVAFPVLHGKCGEDGAIQGLFVLSGIPYVGCDIQSSAACMDKSLAYILTKNAGIAVPEFQ 150

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
           ++++        ++ P  +KP + GSS G  V K + +  L+    ++  +  ++LIEQ 
Sbjct: 151 IIDKGDKPEAGALTYPVFVKPARSGSSFG--VTKVNGTEELNAAIEAAGQYDGKILIEQA 208

Query: 172 VDGIELTCGVMGDAS----LDVTEIAVPKSDFYSY---ELKYSSLNSTHVLPAKIPLDIY 224
           + G E+ C VMG+       +V +I +    F  +   E +  S N+   +PA IP++  
Sbjct: 209 ISGCEVGCAVMGNEDDLIVGEVDQIRLSHGIFRIHQENEPEKGSENAMITVPADIPVEER 268

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
             VQ  A   ++ +GCRG++R D LF      +   E+N  PG T  S +  M A AG +
Sbjct: 269 NRVQETAKKVYRVLGCRGLARVD-LFLQEDGGIVLNEVNTMPGFTSYSRYTRMVAAAGIT 327

Query: 285 FRELL 289
              L+
Sbjct: 328 LPALI 332


>gi|73662109|ref|YP_300890.1| D-alanyl-alanine synthetase A [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|123643053|sp|Q49Z31|DDL_STAS1 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|72494624|dbj|BAE17945.1| D-alanine-D-alanine ligase [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 356

 Score =  113 bits (282), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 73/252 (28%), Positives = 133/252 (52%), Gaps = 16/252 (6%)

Query: 55  FNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--SIL 112
           F +LHG  GEDG +Q + E+L+IPY  +G+LA++ SMDK+  KQ+ +  G+P  P  S L
Sbjct: 92  FPLLHGPNGEDGTIQGLFEVLDIPYVGNGVLAASSSMDKLVMKQLFAHRGLPQLPYVSFL 151

Query: 113 VNRFTMDSQHL-------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
            + +     ++       +  P  +KP   GSS+GI     ++ +   + ++  ++   +
Sbjct: 152 RSEYHKYEGNILKLVHDKLEYPVFVKPANLGSSVGISKCNNEEELKNGIEEAFQFDR--K 209

Query: 166 LLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD 222
           L+IEQ ++  E+   V+G+   + T   E+ + +  FY Y+ KY        +PA +  +
Sbjct: 210 LVIEQGIEAREIEVAVLGNDYPETTWPGEV-IKEVAFYDYKAKYKDGKIKLDIPADLDEE 268

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAG 282
           +   ++ +A  A +A  C G+ R+DF F     ++F  E N  PG T  S++P +    G
Sbjct: 269 VQMTLRNMAVEAFKATDCAGLLRADF-FVTDDNQIFINETNAMPGFTAFSMYPSLWENMG 327

Query: 283 YSFRELLLWMVE 294
            S+ +L+  ++E
Sbjct: 328 VSYSDLIKKLIE 339


>gi|228474869|ref|ZP_04059598.1| D-alanine--D-alanine ligase [Staphylococcus hominis SK119]
 gi|228271101|gb|EEK12481.1| D-alanine--D-alanine ligase [Staphylococcus hominis SK119]
          Length = 356

 Score =  112 bits (281), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 74/259 (28%), Positives = 132/259 (50%), Gaps = 20/259 (7%)

Query: 50  KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109
           K D  F +LHG  GEDG +Q + E+L++PY  +G+LA++ SMDK+  KQ+    G+P  P
Sbjct: 87  KYDAIFPLLHGPNGEDGTIQGLFEVLDLPYVGNGVLAASSSMDKLVMKQLFEHRGLPQLP 146

Query: 110 --SILVNRFTMDSQHLI-------SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160
             S L + +     ++I       + P  +KP+  GSS+GI     +  +   + ++  +
Sbjct: 147 YISFLRSEYEKYEGNIIKLVNDKLTYPVFVKPVNLGSSVGISKCNNEDELKKGIEEAFQF 206

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKS-----DFYSYELKYSSLNSTHVL 215
           +   +L+IEQ +   E+   V+G+   D  E   P        FY Y+ KY     +  +
Sbjct: 207 DR--KLVIEQGIIAREVEVAVLGN---DYPETTWPGEVIKDVQFYDYKSKYKDGKISLQI 261

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275
           PA +  ++   ++ +A  A +A  C G+ R+DF F     +++  E N  PG T  S++P
Sbjct: 262 PADLDEEVQMTLRNMALEAFKATDCSGLVRADF-FVTEDNQIYINETNAMPGFTAFSMYP 320

Query: 276 EMAAYAGYSFRELLLWMVE 294
            +    G S+ +L+  +++
Sbjct: 321 NLWENMGLSYSDLITKLID 339


>gi|310658242|ref|YP_003935963.1| d-alanine-d-alanine ligase a [Clostridium sticklandii DSM 519]
 gi|308825020|emb|CBH21058.1| D-alanine-D-alanine ligase A [Clostridium sticklandii]
          Length = 306

 Score =  112 bits (281), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 70/215 (32%), Positives = 116/215 (53%), Gaps = 15/215 (6%)

Query: 45  VLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCG 104
           V+A L  +L F VLHG +GEDG +Q +LEL  IPY    +LASA  MDK  +K++ S  G
Sbjct: 87  VIAEL--ELVFPVLHGPYGEDGKLQGLLELSGIPYVGCSVLASANGMDKDMAKKIFSYEG 144

Query: 105 VPVCPSILVNRFTMDSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
           +   P I    +   +Q ++S        P  IKP   GSS+GI   K  Q + L + ++
Sbjct: 145 INQVPHITCYSYEQ-TQEIVSRAEANLGYPCFIKPANMGSSVGISKAKDKQQLVLAMQKA 203

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDAS---LDVTEIAVPKSDFYSYELKYSSLNSTHV 214
             ++H  +++IE+ V+  E+   V+G+     + V    +P  +FY Y+ KY S  S  +
Sbjct: 204 FEYDH--KIIIEKGVNAREIEVAVLGNCDNIRISVAGEIIPSDEFYDYDAKYKSNASQLI 261

Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
           +PA +  +  +++Q +A+ A++ +   G+ R  F 
Sbjct: 262 IPADLSFEADRQIQDMAYRAYKGLNAEGLCRIRFF 296


>gi|314935966|ref|ZP_07843316.1| D-alanine--D-alanine ligase [Staphylococcus hominis subsp. hominis
           C80]
 gi|313655972|gb|EFS19714.1| D-alanine--D-alanine ligase [Staphylococcus hominis subsp. hominis
           C80]
          Length = 356

 Score =  112 bits (281), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 75/259 (28%), Positives = 132/259 (50%), Gaps = 20/259 (7%)

Query: 50  KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109
           K D  F +LHG  GEDG +Q + E+L++PY  +G+LA++ SMDK+  KQ+    G+P  P
Sbjct: 87  KYDAIFPLLHGPNGEDGTIQGLFEVLDLPYVGNGVLAASSSMDKLVMKQLFEHRGLPQLP 146

Query: 110 --SILVNRFTMDSQHLI-------SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160
             S L + +     ++I       + P  +KP   GSS+GI     +  +   + ++  +
Sbjct: 147 YISFLRSEYEKYEGNIIKLVNDKLTYPVFVKPANLGSSVGISKCNNEDELKKGIEEAFQF 206

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKS-----DFYSYELKYSSLNSTHVL 215
           +   +L+IEQ V   E+   V+G+   D  E   P        FY Y+ KY     +  +
Sbjct: 207 DR--KLVIEQGVIAREVEVAVLGN---DYPETTWPGEVIKDVQFYDYKSKYKDGKISLQI 261

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275
           PA++  ++   ++ +A  A +A  C G+ R+DF F     +++  E N  PG T  S++P
Sbjct: 262 PAELDEEVQMTLRNMALEAFKATDCSGLVRADF-FVTEDNQIYINETNAMPGFTAFSMYP 320

Query: 276 EMAAYAGYSFRELLLWMVE 294
            +    G S+ +L+  +++
Sbjct: 321 SLWENMGLSYSDLITKLID 339


>gi|199599636|ref|ZP_03213015.1| D-alanine-D-alanine ligase related ATP-grasp enzyme [Lactobacillus
           rhamnosus HN001]
 gi|199589469|gb|EDY97596.1| D-alanine-D-alanine ligase related ATP-grasp enzyme [Lactobacillus
           rhamnosus HN001]
          Length = 360

 Score =  112 bits (281), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 91/343 (26%), Positives = 159/343 (46%), Gaps = 55/343 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID----------------------- 37
           + VL GG S+ER VS+SSG    +AL   G + + ID                       
Sbjct: 3   IVVLAGGRSTERNVSISSGYRITNALRQKGQQATFIDLFLGYDLEGKTVDQVFDDANTSK 62

Query: 38  ------------------VDRSVGL----VLAHLKP-DLAFNVLHGNFGEDGLVQAILEL 74
                             +D S  L    VLA  K  D+ F  LHG  GE+G VQA L+L
Sbjct: 63  DLKISDAILTDADINKLRIDGSTQLFGPNVLAICKAADIVFLALHGGDGENGKVQATLDL 122

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI--SPPYVIKP 132
             + YT SG LAS ++M+K+ SK+V+   G+         R   + +H +    P V+KP
Sbjct: 123 NNVKYTGSGPLASGITMNKVFSKEVMLYHGIQTAAFKEFKR-NQNGKHTVPFDFPVVVKP 181

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192
             GGSS+G  +    + +   +  +  +   +  ++E++  G E + GV+   +    EI
Sbjct: 182 TSGGSSVGTHIAHNQEELENGI--ADVFRFDNSAIVEEFTPGREFSLGVVNGRAFSAIEI 239

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
            V  S +Y ++ K+ +  +  + P K +   +++ ++ ++      +G +   R DF  +
Sbjct: 240 KV-HSGWYDFKHKFQAGYTDFITPPKNLDESVHQAMKDVSLQTMDVLGLQNYGRIDFFAN 298

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             ++ V+ +E N  PGMTP+S+ P+ A   G  + +L++ ++ 
Sbjct: 299 --NKGVWVIEANNLPGMTPLSLLPQEAEADGVEYGDLVMDIIN 339


>gi|56123460|gb|AAV74569.1| D-alanine:D-lactate ligase [Eggerthella lenta]
          Length = 342

 Score =  112 bits (280), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 76/245 (31%), Positives = 122/245 (49%), Gaps = 10/245 (4%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+AF VLHG  GEDG +Q +  L  IPY    I +SA  MDK  +  +  + G+ V    
Sbjct: 91  DVAFPVLHGKCGEDGAIQGLFVLSGIPYVGCDIQSSAACMDKSLAYILTKNAGIAVPEFQ 150

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
           ++++        ++ P  +KP + GSS G  V K + +  L+    ++  +  ++LIEQ 
Sbjct: 151 IIDKGDKPEAGALTYPVFVKPARSGSSFG--VTKVNGTEELNAAIEAAGQYDGKILIEQA 208

Query: 172 VDGIELTCGVMGDAS----LDVTEIAVPKSDFYSY---ELKYSSLNSTHVLPAKIPLDIY 224
           +   E+ C VMG+       +V +I +    F  +   E +  S N+   +PA IP++  
Sbjct: 209 ISVCEVGCAVMGNEDDLIVGEVDQIRLSHGIFRIHQENEPEKGSENAMITVPADIPVEER 268

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
             VQ  A   ++ +GCRG++R D LF      +   E+N  PG T  S +P M A AG +
Sbjct: 269 NRVQETAKKVYRVLGCRGLARVD-LFLQEDGGIVLNEVNTMPGFTSYSRYPRMVAAAGIT 327

Query: 285 FRELL 289
              L+
Sbjct: 328 LPALI 332


>gi|84310013|emb|CAI84704.1| D-alanine-D-alanine ligase [Lactobacillus plantarum]
          Length = 225

 Score =  112 bits (280), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 72/210 (34%), Positives = 123/210 (58%), Gaps = 14/210 (6%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+ + V+HGN GEDG +Q + +LL+ PY  SG+LASA S DK  +KQ+++   +     +
Sbjct: 18  DIFYPVVHGNLGEDGTLQGLFKLLKKPYVGSGVLASAASFDKDITKQILTHHHIQNTKYV 77

Query: 112 LV---NRFTMDSQHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
           +V   NR  M   +L   +     IKP   GSS+GI   + +Q   LD L + ++ +  +
Sbjct: 78  VVTPENRDQMTYAYLQAHVGDHLFIKPANQGSSIGIHKAENEQEY-LDGL-ADAFKYDYK 135

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTE---IAVPKSD-FYSYELKYSSLNS-THVLPAKI 219
           +L+E+ +D   E+ C ++G+ +   ++   I VPK+D FY Y  K+   +  T  LP ++
Sbjct: 136 ILVEESIDNPCEVECSILGNENPKASKLGAIDVPKTDTFYDYNNKFVDASGVTFELPVEL 195

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
           P D+ K +Q+++  A +A+G +G++R DFL
Sbjct: 196 PADLTKRIQQMSLDAFKALGLKGMARVDFL 225


>gi|84310005|emb|CAI84700.1| D-alanine-D-alanine ligase [Lactobacillus plantarum]
 gi|84310007|emb|CAI84701.1| D-alanine-D-alanine ligase [Lactobacillus plantarum]
 gi|84310009|emb|CAI84702.1| D-alanine-D-alanine ligase [Lactobacillus plantarum]
 gi|84310011|emb|CAI84703.1| D-alanine-D-alanine ligase [Lactobacillus plantarum]
 gi|170293287|gb|ACB12692.1| D-alanine-D-alanine ligase [Lactobacillus plantarum]
          Length = 225

 Score =  112 bits (280), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 72/210 (34%), Positives = 123/210 (58%), Gaps = 14/210 (6%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+ + V+HGN GEDG +Q + +LL+ PY  SG+LASA S DK  +KQ+++   +     +
Sbjct: 18  DIFYPVVHGNLGEDGTLQGLFKLLKKPYVGSGVLASAASFDKDITKQILTHHHIQNTKYV 77

Query: 112 LV---NRFTMDSQHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
           +V   NR  M   +L   +     IKP   GSS+GI   + +Q   LD L + ++ +  +
Sbjct: 78  VVTPENRDQMTYAYLQAHVGDHLFIKPANQGSSIGIHKAENEQEY-LDGL-ADAFKYDYK 135

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTE---IAVPKSD-FYSYELKYSSLNS-THVLPAKI 219
           +L+E+ +D   E+ C ++G+ +   ++   I VPK+D FY Y  K+   +  T  LP ++
Sbjct: 136 ILVEESIDNPREVECSILGNENPKASKLGAIDVPKTDTFYDYNNKFVDASGVTFELPVEL 195

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
           P D+ K +Q+++  A +A+G +G++R DFL
Sbjct: 196 PADLTKRIQQMSLDAFKALGLKGMARVDFL 225


>gi|258507143|ref|YP_003169894.1| D-alanine--D-alanine ligase [Lactobacillus rhamnosus GG]
 gi|257147070|emb|CAR86043.1| D-alanine--D-alanine ligase [Lactobacillus rhamnosus GG]
 gi|259648513|dbj|BAI40675.1| D-alanine-D-alanine ligase [Lactobacillus rhamnosus GG]
          Length = 360

 Score =  112 bits (280), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 91/343 (26%), Positives = 158/343 (46%), Gaps = 55/343 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID----------------------- 37
           + VL GG S+ER VS+SSG    +AL   G + + ID                       
Sbjct: 3   IVVLAGGRSTERNVSISSGYRITNALRQKGQQATFIDLFLGYDLEGKTVDQVFDDANTSK 62

Query: 38  ------------------VDRSVGL----VLAHLKP-DLAFNVLHGNFGEDGLVQAILEL 74
                             +D S  L    VLA  K  D+ F  LHG  GE+G VQA L+L
Sbjct: 63  DLKISDAILTDADINKLRIDGSTQLFGPNVLAICKAADIVFLALHGGDGENGKVQATLDL 122

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI--SPPYVIKP 132
             + YT SG LAS ++M+K+ SK+V+   G+         R   + +H +    P V+KP
Sbjct: 123 NNVKYTGSGPLASGITMNKVFSKEVMLYHGIQTAAFKEFKR-NQNGKHTVPFDFPVVVKP 181

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192
             GGSS+G  +    + +   +  +  +   +  ++E++  G E + GV+   +    EI
Sbjct: 182 TSGGSSVGTHIAHNQEELENGI--ADVFRFDNSAIVEEFTPGREFSLGVVNGRAFSAIEI 239

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
            V  S +Y ++ K+ +  +  + P K +   +++ ++ ++      +G +   R DF  +
Sbjct: 240 KV-HSGWYDFKHKFQAGYTDFITPPKNLDESVHQAMKDVSLQTMDVLGLQNYGRIDFFAN 298

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
              + V+ +E N  PGMTP+S+ P+ A   G  + +L++ ++ 
Sbjct: 299 --DKGVWVIEANNLPGMTPLSLLPQEAEADGVEYGDLVMDIIN 339


>gi|297197149|ref|ZP_06914546.1| D-alanine:D-lactate ligase [Streptomyces sviceus ATCC 29083]
 gi|197716566|gb|EDY60600.1| D-alanine:D-lactate ligase [Streptomyces sviceus ATCC 29083]
          Length = 346

 Score =  112 bits (280), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 81/249 (32%), Positives = 125/249 (50%), Gaps = 10/249 (4%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+   VLHG  GEDG +Q +LEL  IPY    I +SAL MDK  +  V SS G+      
Sbjct: 92  DVVLPVLHGKLGEDGAIQGLLELSGIPYVGCDIQSSALCMDKSLAYLVASSAGIRTPSHW 151

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
            V          IS P  +KP + G S G+  + + + + L  ++++   +  ++LIE+ 
Sbjct: 152 TVTAGEHIDPDRISWPVFVKPARSGPSFGVTKVSRREEL-LSAVETAR-QYDSKVLIEEV 209

Query: 172 VDGIELTCGVMGDA----SLDVTEIAVPKSDFYSYEL---KYSSLNSTHVLPAKIPLDIY 224
           V G E+ C V+G+     +  V  IA+    F  ++    +  S NS  ++PA IP +  
Sbjct: 210 VVGSEIGCAVLGNEKGLITGQVDHIALSHGFFRIHQEDQPETGSDNSVAIVPADIPEESR 269

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
             V   A   ++A+GCRG++R D +F     +V   E+N  PGMT  S +P M A A   
Sbjct: 270 SLVTEQAKALYRALGCRGLARVD-MFLREDGEVVLNEVNTFPGMTSYSRYPRMMAAADLP 328

Query: 285 FRELLLWMV 293
             E++  +V
Sbjct: 329 LTEVIDRLV 337


>gi|315641806|ref|ZP_07896810.1| D-alanine-D-alanine ligase [Enterococcus italicus DSM 15952]
 gi|315482481|gb|EFU73020.1| D-alanine-D-alanine ligase [Enterococcus italicus DSM 15952]
          Length = 363

 Score =  112 bits (279), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 69/254 (27%), Positives = 127/254 (50%), Gaps = 16/254 (6%)

Query: 53  LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--S 110
           + F +LHG  GEDG +Q  LE + +PY  +G++ SA  MDK+ +K ++ + G+P  P   
Sbjct: 95  IVFPLLHGPNGEDGTIQGFLETIGMPYVGAGVVTSACGMDKIMTKYILQAAGIPQVPYVP 154

Query: 111 ILVNRFTMDSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
           +L +++  + + +          P  +KP   GSS+GI   +  + +   L    ++ + 
Sbjct: 155 VLKHQWKENPKQVFEQCEGSMLYPMFVKPANMGSSVGISKAENREELQHAL--EEAYQYD 212

Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
            + +IEQ ++  E+   ++G+  +  T   EI V    FY Y  KY        +PA +P
Sbjct: 213 TRAVIEQGIEAREIEVAILGNEDVRTTMAGEI-VKDVAFYDYNSKYIDNKIEMQIPASVP 271

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280
            ++  + Q  A  A+  +G  G+SR DF       ++F  E+N  PG T  S++P +   
Sbjct: 272 DEVQVKAQEYAKKAYTMLGGSGLSRCDFFLTS-KNELFLNELNTMPGFTQFSMYPSLWEQ 330

Query: 281 AGYSFRELLLWMVE 294
            G  + +L+  +++
Sbjct: 331 TGLKYGDLIEELIQ 344


>gi|229550951|ref|ZP_04439676.1| D-alanine--D-alanine ligase [Lactobacillus rhamnosus LMS2-1]
 gi|258538338|ref|YP_003172837.1| D-alanine--D-alanine ligase [Lactobacillus rhamnosus Lc 705]
 gi|229315776|gb|EEN81749.1| D-alanine--D-alanine ligase [Lactobacillus rhamnosus LMS2-1]
 gi|257150014|emb|CAR88986.1| D-alanine--D-alanine ligase [Lactobacillus rhamnosus Lc 705]
          Length = 360

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 91/343 (26%), Positives = 158/343 (46%), Gaps = 55/343 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------------------- 38
           + VL GG S+ER VS+SSG    +AL   G + + ID+                      
Sbjct: 3   IVVLAGGRSTERNVSISSGYRITNALRQKGQQATFIDLFLGYDLEGKTVDQVFDDANTSK 62

Query: 39  -------------------DRSVGL----VLAHLKP-DLAFNVLHGNFGEDGLVQAILEL 74
                              D S  L    VLA  K  D+ F  LHG  GE+G VQA L+L
Sbjct: 63  DLKISDAILTDADINKLRTDGSTQLFGPNVLAICKAADIVFLALHGGDGENGKVQATLDL 122

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI--SPPYVIKP 132
             + YT SG LAS ++M+K+ SK+V+   G+         R   + +H +    P V+KP
Sbjct: 123 NNVKYTGSGPLASGITMNKVFSKEVMLYHGIQTAAFKEFKR-NQNGKHTVPFDFPVVVKP 181

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192
             GGSS+G  +    + +   +  +  +   +  ++E++  G E + GV+   +    EI
Sbjct: 182 TSGGSSVGTHIAHNQEELENGI--ADVFRFDNSAIVEEFTPGREFSLGVVNGRAFSAIEI 239

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
            V  S +Y ++ K+ +  +  + P K +   +++ ++ ++      +G +   R DF  +
Sbjct: 240 KV-HSGWYDFKHKFQAGYTDFITPPKNLDESVHQAMKDVSLQTMDVLGLQNYGRIDFFAN 298

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
              + V+ +E N  PGMTP+S+ P+ A   G  + +L++ ++ 
Sbjct: 299 --DKGVWVIEANNLPGMTPLSLLPQEAEADGVEYGDLVMDIIN 339


>gi|218134983|ref|ZP_03463787.1| hypothetical protein BACPEC_02888 [Bacteroides pectinophilus ATCC
           43243]
 gi|217990368|gb|EEC56379.1| hypothetical protein BACPEC_02888 [Bacteroides pectinophilus ATCC
           43243]
          Length = 398

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 78/265 (29%), Positives = 134/265 (50%), Gaps = 28/265 (10%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+AF V+HG   EDG  Q  L+ + IP+    + ASA+ MDK  +K V+    VPV  + 
Sbjct: 106 DVAFPVVHGTNVEDGGFQGYLKTMGIPFVGCDVTASAIGMDKYITKLVLKESNVPVLDAR 165

Query: 112 L--------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
           L        +     D +++   P ++KP+  GSS+GI V K    + L      ++ + 
Sbjct: 166 LYTLSDYADMESMMNDIENVFGYPVIVKPVNLGSSVGISVAK--SRVELANSVDDAFRYA 223

Query: 164 DQLLIEQYVDGI-ELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSS----------L 209
            ++L+E  +  + E+ C V+GD +  +    E  +   D  SYE KY S           
Sbjct: 224 TKVLVEHAITNLREINCSVLGDENDAIASECEEPLHTKDILSYEDKYVSNAKGSGSKGMA 283

Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
           + +  +PA++  +  +EV+ LA  + +A+GC G+SR DF+ D  + K+++ EIN  PG  
Sbjct: 284 SVSRRIPAELTPEKREEVRELAVRSFKALGCNGVSRIDFMIDADTDKLYFNEINTIPGSL 343

Query: 270 PVSIFPEMAAYAGYSFRELLLWMVE 294
              ++  +    G  ++ELL  M++
Sbjct: 344 AFYLWEPV----GVPYKELLDRMIQ 364


>gi|295108990|emb|CBL22943.1| D-alanine--D-alanine ligase [Ruminococcus obeum A2-162]
          Length = 344

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 97/335 (28%), Positives = 156/335 (46%), Gaps = 53/335 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKV-------------------SQIDVDRS 41
           + VL GG S+ER+VS+ SG    SAL     +                       DV+++
Sbjct: 3   IVVLAGGTSTERDVSIVSGTGICSALRQKNHQAILVDVFCGLENVDWADPFPESYDVEQA 62

Query: 42  VGLVLA---HL--------------------KPDLAFNVLHGNFGEDGLVQAILELLEIP 78
           V  + +   H+                    K D  F  LHG+ GEDG +QA+ +L+ I 
Sbjct: 63  VSYIKSFNPHIEELKKSRKEFFGPNVLELCKKADFVFLGLHGSNGEDGRLQAVFDLMGIL 122

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFTMDSQHLISPPYVIKPLKG 135
           YT +G L+SA++MDK  +K +    GVP      +   +R     +  +  P V+K   G
Sbjct: 123 YTGTGYLSSAMAMDKGVTKAMFQMRGVPTPGGKAMKKKDRVETLQELGMDFPVVVKTCCG 182

Query: 136 GSSLGIIVI--KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
           GSS+G+ ++  + D +  LD     ++ + +++++E++V+G E T  V+   +  V +I 
Sbjct: 183 GSSIGVYIVDNQADYTKALD----GAFTYENEVVVEEFVEGTEYTVAVVDGKAYPVVQI- 237

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
           VP   FY YE KY         PA I  ++ + +Q  A   + A+      R DF+    
Sbjct: 238 VPVQGFYDYENKYKPGAVKETCPAPISEELTRRLQEYAVEGYHALEMESYGRLDFIVTK- 296

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
             K++ LE N  PGMTP S+ P+ AA  G  +  L
Sbjct: 297 DEKIYCLEANTLPGMTPTSLIPQEAAVLGMDYPTL 331


>gi|227517504|ref|ZP_03947553.1| D-alanine--D-alanine ligase [Enterococcus faecalis TX0104]
 gi|227075024|gb|EEI12987.1| D-alanine--D-alanine ligase [Enterococcus faecalis TX0104]
          Length = 344

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 77/247 (31%), Positives = 123/247 (49%), Gaps = 12/247 (4%)

Query: 52  DLAFNVLHGNFG--EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109
           D+AF VLHG  G  EDG +Q +  L  IPY    I +SA  MDK  +  +  + G+ V  
Sbjct: 91  DVAFPVLHGKCGGGEDGAIQGLFVLSGIPYVGCDIQSSAACMDKSLAYILTKNAGIAVPE 150

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
             ++++        ++ P  +KP + GSS G  V K + +  L+    ++  +  ++LIE
Sbjct: 151 FQMIDKGDKPEAGALTYPVFVKPARSGSSFG--VTKVNGTEELNAAIEAAGQYDGKILIE 208

Query: 170 QYVDGIELTCGVMGDAS----LDVTEIAVPKSDFYSY---ELKYSSLNSTHVLPAKIPLD 222
           Q + G E+ C VMG+       +V +I +    F  +   E +  S N+   +PA IP++
Sbjct: 209 QAISGCEVGCAVMGNEDDLIVGEVDQIRLSHGIFRIHQENEPEKGSENAMITVPADIPVE 268

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAG 282
               VQ  A   ++ +GCRG++R D LF      +   E+N  PG T  S +P M A AG
Sbjct: 269 ERNRVQETAKKVYRVLGCRGLARVD-LFLQEDGGIVLNEVNTLPGFTSYSRYPRMMAAAG 327

Query: 283 YSFRELL 289
            +   L+
Sbjct: 328 ITLPALI 334


>gi|254495868|ref|ZP_05108778.1| D-alanine--D-alanine ligase A [Legionella drancourtii LLAP12]
 gi|254354904|gb|EET13529.1| D-alanine--D-alanine ligase A [Legionella drancourtii LLAP12]
          Length = 364

 Score =  110 bits (275), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 90/339 (26%), Positives = 153/339 (45%), Gaps = 53/339 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDL------- 53
           + +L GG S E EVSL S  +  + L+   + +  + +D+  GL   H   DL       
Sbjct: 7   LVLLYGGKSGEHEVSLVSAASVLANLDVEKYHIIPVAMDKD-GLFYVHQYEDLLAYKDKL 65

Query: 54  -------------------------AFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
                                     F V+HG   EDG +Q +LEL  + Y    +L+SA
Sbjct: 66  PVVTERSKSLDNLLINGRLAIDAEVVFPVVHGPLYEDGCLQGLLELAGVAYVGCDVLSSA 125

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVN---------RFTMDSQHLISPPYVIKPLKGGSSL 139
           + MDK  +++V    G+      L++         RF  D       P  +KP   GSS+
Sbjct: 126 IGMDKDMTRRVACIDGLKSARYKLLSWHAPLSERQRFCQDVAAEFGWPLFVKPCAMGSSV 185

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT-------EI 192
           GI   K    + + +    +  + +++L+E +V+G E+   V+  A   +        EI
Sbjct: 186 GIHKAKSMDELVVAV--DDALRYDEEILVESFVEGREIELSVLESAVPSMAPRVSVAGEI 243

Query: 193 AVPKSD-FYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
            V   D FYSY  KY   N T +L PA +   +  E+++ A      + C+G++R DF  
Sbjct: 244 RVHHPDGFYSYSAKYLESNQTDLLIPAALSTTLQAELKQAAADIFTRLKCKGMARIDFFV 303

Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           +  +  +++ EIN  PG T +S++P++   +G ++ +LL
Sbjct: 304 NDKTESIYFNEINTLPGFTSISMYPKLWQESGLAYPDLL 342


>gi|146319006|ref|YP_001198718.1| D-alanine-D-alanine ligase and related ATP-grasp enzymes
           [Streptococcus suis 05ZYH33]
 gi|145689812|gb|ABP90318.1| D-alanine-D-alanine ligase and related ATP-grasp enzymes
           [Streptococcus suis 05ZYH33]
          Length = 424

 Score =  110 bits (274), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 93/338 (27%), Positives = 156/338 (46%), Gaps = 47/338 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           + +L GG S+EREVS+ S ++   A+    F V    + ++   +               
Sbjct: 24  LILLYGGRSAEREVSVLSAESVMRAINYDKFFVKTYFISQTGDFIKTQEFSQTPSADEKL 83

Query: 49  -----------LKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
                      ++P        + F VLHG  GEDG +Q  LE+L +PY  + IL+S+++
Sbjct: 84  MTNATIVEEQKIRPSDIYEEKAVVFPVLHGPMGEDGSIQGFLEVLRMPYVGTNILSSSVA 143

Query: 91  MDKMRSKQVVSSCGVPVCPSILV------NRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
           MDK+ +K+V+ S G+   P + V      +    + +  ++ P  +KP   GSS+GI   
Sbjct: 144 MDKITTKRVLESAGISQVPYVAVIEGENIDDKIAEIEGKLTYPVFVKPANMGSSVGI--S 201

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYS 201
           K +    L      ++ +  ++L+EQ V+  E+  G++G+A +      E+ V    FY 
Sbjct: 202 KAEDLAGLRKALDLAFKYDSRVLVEQGVNAREIEVGLLGNADVKTKLPGEV-VKNVAFYD 260

Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
           Y  KY        +PAKI   I   ++  A  A +AIG  G+S  DF     + ++F  E
Sbjct: 261 YHAKYIDNKIPMEIPAKIDESIMDIMRDNAAKAFRAIGGCGLSPCDFFLTE-NGEIFLNE 319

Query: 262 INVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
           +N  PG T   ++P +    G  + EL    +E   CL
Sbjct: 320 LNTMPGFTQWFMYPLLWDNMGLGYPEL----IEKLVCL 353


>gi|257083761|ref|ZP_05578122.1| D-alanine:D-alanine ligase [Enterococcus faecalis Fly1]
 gi|256991791|gb|EEU79093.1| D-alanine:D-alanine ligase [Enterococcus faecalis Fly1]
          Length = 356

 Score =  110 bits (274), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 75/257 (29%), Positives = 129/257 (50%), Gaps = 18/257 (7%)

Query: 53  LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
           + F VLHG  GEDG +Q  +E + +PY  +G+LASA +MDK+ +K ++ + G+P  P + 
Sbjct: 92  IVFPVLHGPNGEDGTIQGFMETINMPYVGAGVLASANAMDKIMTKYLLQTVGIPQVPFVP 151

Query: 113 VNR----------FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
           V R          F      LI P +V KP   GSS+GI   K +    L      ++ +
Sbjct: 152 VLRSDWKGNPKEVFEKCEGSLIYPVFV-KPANMGSSVGI--SKAENREELQEALEEAFRY 208

Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKI 219
             + ++EQ ++  E+   ++G+  +  T   E+ V    FY Y+ KY +      +PA +
Sbjct: 209 DARAIVEQGIEAREIEVAILGNEDVRTTLPGEV-VKDVAFYDYDAKYINNTIEMQIPAHV 267

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279
           P ++  + Q  A  A+  +   G+SR DF       ++F  E+N  PG T  S++P +  
Sbjct: 268 PEEVAHQAQEYAKKAYIMLDGSGLSRCDFFLTS-KNELFLNELNTMPGFTDFSMYPLLWE 326

Query: 280 YAGYSFRELLLWMVEDA 296
             G  + +L+  +++ A
Sbjct: 327 NMGLKYSDLIEELIQLA 343


>gi|255971299|ref|ZP_05421885.1| D-alanine:D-alanine ligase [Enterococcus faecalis T1]
 gi|255973918|ref|ZP_05424504.1| D-alanine:D-alanine ligase [Enterococcus faecalis T2]
 gi|256617717|ref|ZP_05474563.1| D-alanine:D-alanine ligase [Enterococcus faecalis ATCC 4200]
 gi|256761603|ref|ZP_05502183.1| D-alanine:D-alanine ligase [Enterococcus faecalis T3]
 gi|256854307|ref|ZP_05559671.1| D-Ala ligase [Enterococcus faecalis T8]
 gi|256957295|ref|ZP_05561466.1| D-alanine:D-alanine ligase [Enterococcus faecalis DS5]
 gi|256959971|ref|ZP_05564142.1| D-alanine:D-alanine ligase [Enterococcus faecalis Merz96]
 gi|256964334|ref|ZP_05568505.1| D-alanine:D-alanine ligase [Enterococcus faecalis HIP11704]
 gi|257077731|ref|ZP_05572092.1| D-Ala-D-Ala ligase [Enterococcus faecalis JH1]
 gi|257086186|ref|ZP_05580547.1| D-alanine:D-alanine ligase [Enterococcus faecalis D6]
 gi|257089258|ref|ZP_05583619.1| D-alanine:D-alanine ligase [Enterococcus faecalis CH188]
 gi|257415411|ref|ZP_05592405.1| D-alanine:D-alanine ligase [Enterococcus faecalis AR01/DG]
 gi|293388801|ref|ZP_06633294.1| D-alanine--D-alanine ligase [Enterococcus faecalis S613]
 gi|294781259|ref|ZP_06746605.1| D-ala D-ala ligase N-terminal domain protein [Enterococcus faecalis
           PC1.1]
 gi|300859798|ref|ZP_07105886.1| D-ala D-ala ligase N-terminal domain protein [Enterococcus faecalis
           TUSoD Ef11]
 gi|307275147|ref|ZP_07556299.1| D-ala D-ala ligase [Enterococcus faecalis TX2134]
 gi|307278459|ref|ZP_07559534.1| D-ala D-ala ligase [Enterococcus faecalis TX0860]
 gi|307290780|ref|ZP_07570675.1| D-ala D-ala ligase [Enterococcus faecalis TX0411]
 gi|312901617|ref|ZP_07760888.1| D-ala D-ala ligase [Enterococcus faecalis TX0470]
 gi|312907062|ref|ZP_07766058.1| D-ala D-ala ligase [Enterococcus faecalis DAPTO 512]
 gi|312952886|ref|ZP_07771747.1| D-ala D-ala ligase [Enterococcus faecalis TX0102]
 gi|255962317|gb|EET94793.1| D-alanine:D-alanine ligase [Enterococcus faecalis T1]
 gi|255966790|gb|EET97412.1| D-alanine:D-alanine ligase [Enterococcus faecalis T2]
 gi|256597244|gb|EEU16420.1| D-alanine:D-alanine ligase [Enterococcus faecalis ATCC 4200]
 gi|256682854|gb|EEU22549.1| D-alanine:D-alanine ligase [Enterococcus faecalis T3]
 gi|256709867|gb|EEU24911.1| D-Ala ligase [Enterococcus faecalis T8]
 gi|256947791|gb|EEU64423.1| D-alanine:D-alanine ligase [Enterococcus faecalis DS5]
 gi|256950467|gb|EEU67099.1| D-alanine:D-alanine ligase [Enterococcus faecalis Merz96]
 gi|256954830|gb|EEU71462.1| D-alanine:D-alanine ligase [Enterococcus faecalis HIP11704]
 gi|256985761|gb|EEU73063.1| D-Ala-D-Ala ligase [Enterococcus faecalis JH1]
 gi|256994216|gb|EEU81518.1| D-alanine:D-alanine ligase [Enterococcus faecalis D6]
 gi|256998070|gb|EEU84590.1| D-alanine:D-alanine ligase [Enterococcus faecalis CH188]
 gi|257157239|gb|EEU87199.1| D-alanine:D-alanine ligase [Enterococcus faecalis ARO1/DG]
 gi|291081958|gb|EFE18921.1| D-alanine--D-alanine ligase [Enterococcus faecalis S613]
 gi|294451595|gb|EFG20051.1| D-ala D-ala ligase N-terminal domain protein [Enterococcus faecalis
           PC1.1]
 gi|300850616|gb|EFK78365.1| D-ala D-ala ligase N-terminal domain protein [Enterococcus faecalis
           TUSoD Ef11]
 gi|306498161|gb|EFM67683.1| D-ala D-ala ligase [Enterococcus faecalis TX0411]
 gi|306504965|gb|EFM74160.1| D-ala D-ala ligase [Enterococcus faecalis TX0860]
 gi|306508175|gb|EFM77293.1| D-ala D-ala ligase [Enterococcus faecalis TX2134]
 gi|310627047|gb|EFQ10330.1| D-ala D-ala ligase [Enterococcus faecalis DAPTO 512]
 gi|310629189|gb|EFQ12472.1| D-ala D-ala ligase [Enterococcus faecalis TX0102]
 gi|311291305|gb|EFQ69861.1| D-ala D-ala ligase [Enterococcus faecalis TX0470]
 gi|315029213|gb|EFT41145.1| D-ala D-ala ligase [Enterococcus faecalis TX4000]
 gi|315032372|gb|EFT44304.1| D-ala D-ala ligase [Enterococcus faecalis TX0017]
 gi|315145187|gb|EFT89203.1| D-ala D-ala ligase [Enterococcus faecalis TX2141]
 gi|315158766|gb|EFU02783.1| D-ala D-ala ligase [Enterococcus faecalis TX0312]
 gi|315163095|gb|EFU07112.1| D-ala D-ala ligase [Enterococcus faecalis TX0645]
 gi|315174911|gb|EFU18928.1| D-ala D-ala ligase [Enterococcus faecalis TX1346]
 gi|315577245|gb|EFU89436.1| D-ala D-ala ligase [Enterococcus faecalis TX0630]
 gi|323480023|gb|ADX79462.1| D-alanine--D-alanine ligase [Enterococcus faecalis 62]
 gi|327534427|gb|AEA93261.1| D-alanine--D-alanine ligase [Enterococcus faecalis OG1RF]
          Length = 356

 Score =  110 bits (274), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 76/257 (29%), Positives = 130/257 (50%), Gaps = 18/257 (7%)

Query: 53  LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
           + F VLHG  GEDG +Q  +E + +PY  +G+LASA +MDK+ +K ++ + G+P  P + 
Sbjct: 92  IVFPVLHGPNGEDGTIQGFMETINMPYVGAGVLASANAMDKIMTKYLLQTVGIPQVPFVP 151

Query: 113 VNR----------FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
           V R          F      LI P +V KP   GSS+GI   K +    L      ++ +
Sbjct: 152 VLRSDWKGNPKEVFEKCEGSLIYPVFV-KPANMGSSVGI--SKAENREELQEALEEAFRY 208

Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKI 219
             + ++EQ ++  E+   ++G+  +  T   E+ V    FY Y+ KY +      +PA +
Sbjct: 209 DARAIVEQGIEAREIEVAILGNEDVRTTLPGEV-VKDVAFYDYDAKYINNTIEMQIPAHV 267

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279
           P ++  + Q  A  A+  +   G+SR DF F     ++F  E+N  PG T  S++P +  
Sbjct: 268 PEEVAHQAQEYAKKAYIMLDGSGLSRCDF-FLTSKNELFLNELNTMPGFTDFSMYPLLWE 326

Query: 280 YAGYSFRELLLWMVEDA 296
             G  + +L+  +++ A
Sbjct: 327 NMGLKYSDLIEELIQLA 343


>gi|257081093|ref|ZP_05575454.1| D-alanine:D-alanine ligase [Enterococcus faecalis E1Sol]
 gi|256989123|gb|EEU76425.1| D-alanine:D-alanine ligase [Enterococcus faecalis E1Sol]
          Length = 356

 Score =  109 bits (273), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 75/257 (29%), Positives = 129/257 (50%), Gaps = 18/257 (7%)

Query: 53  LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
           + F VLHG  GEDG +Q  +E + +PY  +G+LASA +MDK+ +K ++ + G+P  P + 
Sbjct: 92  IVFPVLHGPNGEDGTIQGFMETINMPYVGAGVLASANAMDKIMTKYLLQTVGIPQVPFVP 151

Query: 113 VNR----------FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
           V R          F      LI P +V KP   GSS+GI   K +    L      ++ +
Sbjct: 152 VLRSDWKGNPKEVFEKCEGSLIYPVFV-KPANMGSSVGI--SKAENREELQEALEEAFRY 208

Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKI 219
             + ++EQ ++  E+   ++G+  +  T   E+ V    FY Y+ KY +      +PA +
Sbjct: 209 DARAIVEQGIEAREIEVAILGNEDVRTTLPGEV-VKDVAFYDYDAKYINNTIEMQIPAHV 267

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279
           P ++  + Q  A  A+  +   G+SR DF       ++F  E+N  PG T  S++P +  
Sbjct: 268 PEEVAHQAQEYAKKAYIMLDGSGLSRCDFFLTS-KNELFLNELNTMPGFTDFSMYPLLWE 326

Query: 280 YAGYSFRELLLWMVEDA 296
             G  + +L+  +++ A
Sbjct: 327 NMGLKYSDLIEELIQLA 343


>gi|262274030|ref|ZP_06051842.1| D-alanine--D-alanine ligase [Grimontia hollisae CIP 101886]
 gi|262221840|gb|EEY73153.1| D-alanine--D-alanine ligase [Grimontia hollisae CIP 101886]
          Length = 332

 Score =  109 bits (273), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 93/329 (28%), Positives = 156/329 (47%), Gaps = 40/329 (12%)

Query: 3   VLMGGISSEREVSLSSGKACASAL--------------EDAGFKVSQ-----IDVDRSVG 43
           +L GG S+E EVSL S     S L              ++ G+K S+     +++D+++ 
Sbjct: 8   LLCGGGSAEHEVSLVSANYLESELNKLPSVSVIRVEITKNDGWKDSKGQDCRLNLDKTLK 67

Query: 44  LVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103
           +    +  D A   +HG  GE G +Q++ EL  +PY      AS +  +K+ SK    + 
Sbjct: 68  VGDEIINIDFAVPCIHGFPGETGDIQSLFELAGVPYMGCDSSASNVCFNKITSKLWFDAI 127

Query: 104 GVPVCPSILVNRFTMDSQHLISPPY------VIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
           G+P  P + +     DS       +       +K    GSS+G   + +  ++   +  +
Sbjct: 128 GIPNTPYVFLTDNNEDSVRSAEDAFDRWGAIFVKAACQGSSVGCYKVTEKSAVREAV--A 185

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYS--SLNS 211
           S++ + +Q+L+E+ V   EL       +  + VT   EIA P+  FY+YE KYS  S + 
Sbjct: 186 SAFGYSNQVLVEKAVRPRELEIAAYHYNGEVVVTRPGEIACPEDTFYTYEEKYSAGSHSQ 245

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271
           T V P  +  +   +++  A  A   +  + +SR DF   P    V   EIN  PGMTP+
Sbjct: 246 TTVEPENLTEEQIAQMREYAEKAFVHLKLKDLSRIDFFLTP-EGDVLLNEINTFPGMTPI 304

Query: 272 SIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           S+FP++  + G++F E L       SC+R
Sbjct: 305 SMFPKLVEHNGHTFSEYL------ESCIR 327


>gi|209364069|ref|YP_001424774.2| D-alanyl-alanine synthetase A [Coxiella burnetii Dugway 5J108-111]
 gi|215919165|ref|NP_820327.2| D-alanyl-alanine synthetase A [Coxiella burnetii RSA 493]
 gi|206584049|gb|AAO90841.2| D-alanine--D-alanine ligase [Coxiella burnetii RSA 493]
 gi|207082002|gb|ABS77778.2| D-alanine--D-alanine ligase [Coxiella burnetii Dugway 5J108-111]
          Length = 373

 Score =  109 bits (273), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 99/348 (28%), Positives = 168/348 (48%), Gaps = 59/348 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVG---------LVLAH--- 48
           ++VL GG S+E E+S+ S K   + L+ A + +S I +D  VG         + LAH   
Sbjct: 8   ISVLCGGQSTEHEISIQSAKNIVNTLDAAKYLISVIFIDH-VGRWYLIDQPEMFLAHSPD 66

Query: 49  ------------------LKP-------------DLAFNVLHGNFGEDGLVQAILELLEI 77
                              KP             D  F ++HG  GEDG +Q +LELL +
Sbjct: 67  HLVKEGSARPITIAFGDAAKPWQSLNGDGRRYSADCVFPMVHGTQGEDGALQGLLELLNL 126

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCP-SILVNRFTMDS--QHLI----SPPYVI 130
           PY  + + +SA+ M+K  +K V+ + G+PV     L  R   +   Q L+    +    +
Sbjct: 127 PYVGANVQSSAVCMEKDLTKTVLRAGGIPVVDWHTLSPRDATEGVYQRLLDRWGTSELFV 186

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190
           K +  GSS+  + +K +      + +   + + D+L++E  + G E+ C V+G+ +   +
Sbjct: 187 KAVSLGSSVATLPVKTETEFTKAVKE--VFRYDDRLMVEPRIRGREIECAVLGNGAPKAS 244

Query: 191 ---EIAVPKSDFYSYELKYSSLN-STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRS 246
              EI +P  D+YSY+ KY   N +T      +   + K++Q++A  A + + C G++R 
Sbjct: 245 LPGEI-IPHHDYYSYDAKYLDPNGATTTTSVDLSESVTKQIQQIAIDAFKMVHCSGMARV 303

Query: 247 DFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           DF   P + KV   EIN  PG T +S++P+M   +G     LL  ++E
Sbjct: 304 DFFVTP-NNKVLVNEINTIPGFTNISMYPKMWEASGLPCPNLLDQLIE 350


>gi|227520089|ref|ZP_03950138.1| D-alanine--D-alanine ligase [Enterococcus faecalis TX0104]
 gi|229546687|ref|ZP_04435412.1| D-alanine--D-alanine ligase [Enterococcus faecalis TX1322]
 gi|229548782|ref|ZP_04437507.1| D-alanine--D-alanine ligase [Enterococcus faecalis ATCC 29200]
 gi|257421093|ref|ZP_05598083.1| D-Ala:D-Ala ligase [Enterococcus faecalis X98]
 gi|293383723|ref|ZP_06629630.1| D-alanine--D-alanine ligase [Enterococcus faecalis R712]
 gi|307267923|ref|ZP_07549311.1| D-ala D-ala ligase [Enterococcus faecalis TX4248]
 gi|307271843|ref|ZP_07553111.1| D-ala D-ala ligase [Enterococcus faecalis TX0855]
 gi|312904404|ref|ZP_07763564.1| D-ala D-ala ligase [Enterococcus faecalis TX0635]
 gi|312978682|ref|ZP_07790409.1| D-ala D-ala ligase [Enterococcus faecalis DAPTO 516]
 gi|227072433|gb|EEI10396.1| D-alanine--D-alanine ligase [Enterococcus faecalis TX0104]
 gi|229306090|gb|EEN72086.1| D-alanine--D-alanine ligase [Enterococcus faecalis ATCC 29200]
 gi|229308193|gb|EEN74180.1| D-alanine--D-alanine ligase [Enterococcus faecalis TX1322]
 gi|257162917|gb|EEU92877.1| D-Ala:D-Ala ligase [Enterococcus faecalis X98]
 gi|291078799|gb|EFE16163.1| D-alanine--D-alanine ligase [Enterococcus faecalis R712]
 gi|306511349|gb|EFM80351.1| D-ala D-ala ligase [Enterococcus faecalis TX0855]
 gi|306515564|gb|EFM84091.1| D-ala D-ala ligase [Enterococcus faecalis TX4248]
 gi|310632231|gb|EFQ15514.1| D-ala D-ala ligase [Enterococcus faecalis TX0635]
 gi|311288389|gb|EFQ66945.1| D-ala D-ala ligase [Enterococcus faecalis DAPTO 516]
 gi|315027032|gb|EFT38964.1| D-ala D-ala ligase [Enterococcus faecalis TX2137]
 gi|315034368|gb|EFT46300.1| D-ala D-ala ligase [Enterococcus faecalis TX0027]
 gi|315148004|gb|EFT92020.1| D-ala D-ala ligase [Enterococcus faecalis TX4244]
 gi|315149605|gb|EFT93621.1| D-ala D-ala ligase [Enterococcus faecalis TX0012]
 gi|315153131|gb|EFT97147.1| D-ala D-ala ligase [Enterococcus faecalis TX0031]
 gi|315155150|gb|EFT99166.1| D-ala D-ala ligase [Enterococcus faecalis TX0043]
 gi|315171748|gb|EFU15765.1| D-ala D-ala ligase [Enterococcus faecalis TX1342]
 gi|329575931|gb|EGG57452.1| D-ala D-ala ligase protein [Enterococcus faecalis TX1467]
          Length = 351

 Score =  109 bits (273), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 74/255 (29%), Positives = 128/255 (50%), Gaps = 18/255 (7%)

Query: 53  LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
           + F VLHG  GEDG +Q  +E + +PY  +G+LASA +MDK+ +K ++ + G+P  P + 
Sbjct: 87  IVFPVLHGPNGEDGTIQGFMETINMPYVGAGVLASANAMDKIMTKYLLQTVGIPQVPFVP 146

Query: 113 VNR----------FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
           V R          F      LI P +V KP   GSS+GI   K +    L      ++ +
Sbjct: 147 VLRSDWKGNPKEVFEKCEGSLIYPVFV-KPANMGSSVGI--SKAENREELQEALEEAFRY 203

Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKI 219
             + ++EQ ++  E+   ++G+  +  T   E+ V    FY Y+ KY +      +PA +
Sbjct: 204 DARAIVEQGIEAREIEVAILGNEDVRTTLPGEV-VKDVAFYDYDAKYINNTIEMQIPAHV 262

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279
           P ++  + Q  A  A+  +   G+SR DF       ++F  E+N  PG T  S++P +  
Sbjct: 263 PEEVAHQAQEYAKKAYIMLDGSGLSRCDFFLTS-KNELFLNELNTMPGFTDFSMYPLLWE 321

Query: 280 YAGYSFRELLLWMVE 294
             G  + +L+  +++
Sbjct: 322 NMGLKYSDLIEELIQ 336


>gi|165924005|ref|ZP_02219837.1| D-alanine--D-alanine ligase [Coxiella burnetii RSA 334]
 gi|39930871|sp|Q83BZ9|DDL_COXBU RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|189083039|sp|A9KGD2|DDL_COXBN RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|165916550|gb|EDR35154.1| D-alanine--D-alanine ligase [Coxiella burnetii RSA 334]
          Length = 372

 Score =  109 bits (272), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 99/348 (28%), Positives = 168/348 (48%), Gaps = 59/348 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVG---------LVLAH--- 48
           ++VL GG S+E E+S+ S K   + L+ A + +S I +D  VG         + LAH   
Sbjct: 7   ISVLCGGQSTEHEISIQSAKNIVNTLDAAKYLISVIFIDH-VGRWYLIDQPEMFLAHSPD 65

Query: 49  ------------------LKP-------------DLAFNVLHGNFGEDGLVQAILELLEI 77
                              KP             D  F ++HG  GEDG +Q +LELL +
Sbjct: 66  HLVKEGSARPITIAFGDAAKPWQSLNGDGRRYSADCVFPMVHGTQGEDGALQGLLELLNL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCP-SILVNRFTMDS--QHLI----SPPYVI 130
           PY  + + +SA+ M+K  +K V+ + G+PV     L  R   +   Q L+    +    +
Sbjct: 126 PYVGANVQSSAVCMEKDLTKTVLRAGGIPVVDWHTLSPRDATEGVYQRLLDRWGTSELFV 185

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190
           K +  GSS+  + +K +      + +   + + D+L++E  + G E+ C V+G+ +   +
Sbjct: 186 KAVSLGSSVATLPVKTETEFTKAVKE--VFRYDDRLMVEPRIRGREIECAVLGNGAPKAS 243

Query: 191 ---EIAVPKSDFYSYELKYSSLN-STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRS 246
              EI +P  D+YSY+ KY   N +T      +   + K++Q++A  A + + C G++R 
Sbjct: 244 LPGEI-IPHHDYYSYDAKYLDPNGATTTTSVDLSESVTKQIQQIAIDAFKMVHCSGMARV 302

Query: 247 DFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           DF   P + KV   EIN  PG T +S++P+M   +G     LL  ++E
Sbjct: 303 DFFVTP-NNKVLVNEINTIPGFTNISMYPKMWEASGLPCPNLLDQLIE 349


>gi|312883382|ref|ZP_07743108.1| D-alanyl-alanine synthetase A [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309368998|gb|EFP96524.1| D-alanyl-alanine synthetase A [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 334

 Score =  109 bits (272), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 90/318 (28%), Positives = 150/318 (47%), Gaps = 34/318 (10%)

Query: 3   VLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDVDRSVGLVLAHLKPDLAFN----- 56
           +L GG ++E E+SL S     S LE  + F V+++++  +     +    ++  N     
Sbjct: 8   LLCGGGAAEHEISLISADFVQSQLELTSEFDVTRVEIKENGWFTCSGQTANIDTNSGTLQ 67

Query: 57  -------------VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103
                         +HG  GE G +QA LEL  +PY   G  AS  S +K+ SK    + 
Sbjct: 68  INGESHVIDFVVPCIHGFPGETGDIQAFLELTGLPYLGCGSEASTNSFNKITSKLWYDAL 127

Query: 104 GVPVCPSILVNRFTMDSQHLISP------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
           G+P  P I ++     +  L            +K  + GSS+G   ++++  + L+ L+ 
Sbjct: 128 GIPNTPYIFLSENNDRALELAKESLKKWGAIFVKAARQGSSVGCYHVRQEAEL-LNALE- 185

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYSSLNSTH 213
            ++++ DQ+LIEQ V   EL          L +T   E+  P+  FYSYE KYS  + T 
Sbjct: 186 GAFSYSDQVLIEQAVKPRELEVAAYEYQGVLYITKPGEVIAPQDKFYSYEEKYSGTSETQ 245

Query: 214 --VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271
             V    +  D    +++ A    + +  R +SR DF   P   +V+  E+N  PGMTP+
Sbjct: 246 TVVEATNLTADQQALIRQSAEKVFKHMRLRHLSRIDFFLTP-DGQVYLNEVNTFPGMTPI 304

Query: 272 SIFPEMAAYAGYSFRELL 289
           S+FP+M  +  ++F E +
Sbjct: 305 SMFPKMLQHNEHNFAEFM 322


>gi|291459933|ref|ZP_06599323.1| D-alanine--D-alanine ligase [Oribacterium sp. oral taxon 078 str.
           F0262]
 gi|291417274|gb|EFE90993.1| D-alanine--D-alanine ligase [Oribacterium sp. oral taxon 078 str.
           F0262]
          Length = 360

 Score =  109 bits (272), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 81/271 (29%), Positives = 135/271 (49%), Gaps = 33/271 (12%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS--------- 102
           D+ F  LHG +GEDG +Q + EL  IPY  SG+LASA+SMDK+ +K + +          
Sbjct: 96  DVIFPALHGKYGEDGSIQGLFELSGIPYVGSGVLASAVSMDKLFTKVIAAQPLKKLGLRQ 155

Query: 103 --CGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154
             C +PV  + L      +NR     Q+    P  +KP   GSS G+  ++K + +P  L
Sbjct: 156 ARC-LPVDAAELGRMEEILNRVEKSFQY----PVFVKPANAGSSCGVSRVEKREELPDAL 210

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV-----TEIAVPKSDFYSYELKYSSL 209
             ++  +   +LL+E+ V G EL C ++    + +      EI    S FY Y+ KY++ 
Sbjct: 211 RAAAKVDR--KLLVEETVYGRELECALLRGPDMKIHASGLGEIRAAAS-FYDYDAKYNNP 267

Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
           +S   +  ++  +  + ++  A     A+   G++R DF          + EIN  PG T
Sbjct: 268 DSVTDVNPELDAENAELIRSAAKAIFAAVDGYGLARVDFFL--TEDGPVFNEINTLPGFT 325

Query: 270 PVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
            +S++P +    G   REL+  ++ D++C R
Sbjct: 326 AISMYPMLWEAKGIGKRELIQRLI-DSACQR 355


>gi|153208936|ref|ZP_01947149.1| D-alanine--D-alanine ligase [Coxiella burnetii 'MSU Goat Q177']
 gi|212218748|ref|YP_002305535.1| D-alanyl-alanine synthetase A [Coxiella burnetii CbuK_Q154]
 gi|226696386|sp|B6J7Z1|DDL_COXB1 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|120575594|gb|EAX32218.1| D-alanine--D-alanine ligase [Coxiella burnetii 'MSU Goat Q177']
 gi|212013010|gb|ACJ20390.1| D-alanine--D-alanine ligase [Coxiella burnetii CbuK_Q154]
          Length = 372

 Score =  109 bits (272), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 98/353 (27%), Positives = 167/353 (47%), Gaps = 69/353 (19%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVG---------LVLAH--- 48
           ++VL GG S+E E+S+ S K   + L+ A + +S I +D  VG         + LAH   
Sbjct: 7   ISVLCGGQSTEHEISIQSAKNIVNTLDAAKYLISLIFIDH-VGRWYLIDQPEMFLAHSPD 65

Query: 49  ------------------LKP-------------DLAFNVLHGNFGEDGLVQAILELLEI 77
                              KP             D  F ++HG  GEDG +Q +LELL +
Sbjct: 66  HLVKEGSARPITIAFGDAAKPWQSLNGDGRRYSADCVFPMVHGTQGEDGALQGLLELLNL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPY--------- 128
           PY  + + +SA+ M+K  +K V+ + G+PV     V+  T+  +      Y         
Sbjct: 126 PYVGANVQSSAVCMEKDLTKTVLRAGGIPV-----VDWHTLSPRDATEGVYQRLLDRWGT 180

Query: 129 ---VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
               +K +  GSS+  + +K +      + +   + + D+L++E  + G E+ C V+G+ 
Sbjct: 181 SELFVKAVSLGSSVATLPVKTETEFTKAVKE--VFRYDDRLMVEPRIRGREIECAVLGNG 238

Query: 186 SLDVT---EIAVPKSDFYSYELKYSSLN-STHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241
           +   +   EI +P  D+YSY+ KY   N +T      +   + K++Q++A  A + + C 
Sbjct: 239 APKASLPGEI-IPHHDYYSYDAKYLDPNGATTTTSVDLSESVTKQIQQIAIDAFKMVHCS 297

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           G++R DF   P + KV   EIN  PG T +S++P+M   +G     LL  ++E
Sbjct: 298 GMARVDFFVTP-NNKVLVNEINTIPGFTNISMYPKMWEASGLPCPNLLDQLIE 349


>gi|47834368|gb|AAT38881.1| D-alanyl-D-alanine ligase [Amycolatopsis coloradensis]
          Length = 347

 Score =  109 bits (272), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 75/245 (30%), Positives = 125/245 (51%), Gaps = 10/245 (4%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           DL   VLHG  GEDG +Q +LE+  IPY    + +SA+ MDK  +  V+ + G+P     
Sbjct: 93  DLVLPVLHGKLGEDGAMQGLLEISGIPYIGCDVPSSAMCMDKSLTYSVIKAAGIPTPNFW 152

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
           +V   T         P  +KP + GSS G+  +   + +   L ++  ++   ++LIE+ 
Sbjct: 153 IVTEDTDVDADAFDYPVFVKPARSGSSFGVSKVSGKEELAAALAEARQFDS--KVLIEEA 210

Query: 172 VDGIELTCGVMGDA----SLDVTEIAVPKSDFYSYEL---KYSSLNSTHVLPAKIPLDIY 224
           V G E+ C ++G+     + +   +A+    F  ++    +  S NS+ ++PA I  +  
Sbjct: 211 VIGSEIGCSILGNDDELLAGECDRVALTHGFFKIHQEESPETGSENSSFIVPADISAESR 270

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
             VQ  A   ++A+GCRG++R D LF      V   E+N  PG+T  S +P M A AG S
Sbjct: 271 AVVQDTAKAIYRALGCRGLARVD-LFLKEDGSVVLNEVNTLPGLTSYSRYPRMMAAAGLS 329

Query: 285 FRELL 289
             +++
Sbjct: 330 LGDVI 334


>gi|82658574|gb|ABB88463.1| DdlN [Amycolatopsis coloradensis]
          Length = 347

 Score =  109 bits (272), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 75/245 (30%), Positives = 125/245 (51%), Gaps = 10/245 (4%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           DL   VLHG  GEDG +Q +LE+  IPY    + +SA+ MDK  +  V+ + G+P     
Sbjct: 93  DLVLPVLHGKLGEDGAMQGLLEISGIPYIGCDVPSSAMCMDKSLTYSVIKAAGIPTPNFW 152

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
           +V   T         P  +KP + GSS G+  +   + +   L ++  ++   ++LIE+ 
Sbjct: 153 IVTEDTDVDADAFDYPVFVKPARSGSSFGVSKVSGKEELAAALAEAREFDS--KVLIEEA 210

Query: 172 VDGIELTCGVMGDA----SLDVTEIAVPKSDFYSYEL---KYSSLNSTHVLPAKIPLDIY 224
           V G E+ C ++G+     + +   +A+    F  ++    +  S NS+ ++PA I  +  
Sbjct: 211 VIGSEIGCSILGNDDELLAGECDRVALTHGFFKIHQEESPETGSENSSFIVPADISAESR 270

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
             VQ  A   ++A+GCRG++R D LF      V   E+N  PG+T  S +P M A AG S
Sbjct: 271 AVVQDTAKAIYRALGCRGLARVD-LFLKEDGSVVLNEVNTLPGLTSYSRYPRMMAAAGLS 329

Query: 285 FRELL 289
             +++
Sbjct: 330 LGDVI 334


>gi|118589872|ref|ZP_01547276.1| D-alanine-D-alanine ligase protein [Stappia aggregata IAM 12614]
 gi|118437369|gb|EAV44006.1| D-alanine-D-alanine ligase protein [Stappia aggregata IAM 12614]
          Length = 358

 Score =  109 bits (272), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 97/341 (28%), Positives = 159/341 (46%), Gaps = 51/341 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD--------------------- 39
           +A+L GG S+E EVS+ S      AL+ + +    I V                      
Sbjct: 10  VAILFGGRSAEHEVSVLSATNVMHALDPSKYDAVPIYVTLEGQWLVSRFENGKLTRPSTG 69

Query: 40  -----------RSVGLVLAHLKPDLA-----FNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                      R V L       DLA     F VLHG  GEDG VQ + E+  +P    G
Sbjct: 70  TEICLVPGGMGRVVALDEGGRSHDLANLDALFPVLHGLHGEDGAVQGLAEVARVPLVGCG 129

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP----PYVIKPLKGGSSL 139
           I  SA ++DK  +K+++   G+P   SI ++   + +   +      P  IKP + GSS+
Sbjct: 130 IAGSANALDKDLAKRLLIEAGLPAARSITIHPHEVPAFETLKKDLGLPIFIKPARQGSSV 189

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG--DASLDVT---EIAV 194
           G  V K   +          + H ++LL E++V G E+   V+   D +L V+   EI  
Sbjct: 190 G--VSKVMTAADFKAAVQEGFKHDNKLLAEEFVLGREIEFAVLEECDGTLFVSRPGEIVP 247

Query: 195 PKSD-FYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            +S  FY+Y+ KY   +   + +PA++P ++   ++ LA  A +A+GC G++R DF F  
Sbjct: 248 AESHGFYTYDAKYVDEDGAALKVPAELPGEVENRMKDLAAKAFRALGCDGMARVDF-FLT 306

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
               V   E+N  PG T +S++ +  A +G ++ E++  ++
Sbjct: 307 QDMNVLINELNTIPGFTNISMYSKAMAASGINYPEIIDRLI 347


>gi|29375431|ref|NP_814585.1| D-alanine--D-alanine ligase [Enterococcus faecalis V583]
 gi|30179787|sp|Q47758|DDL_ENTFA RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|29342891|gb|AAO80655.1| D-alanine--D-alanine ligase [Enterococcus faecalis V583]
          Length = 348

 Score =  109 bits (272), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 75/257 (29%), Positives = 129/257 (50%), Gaps = 18/257 (7%)

Query: 53  LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
           + F VLHG  GEDG +Q  +E + +PY  +G+LASA +MDK+ +K ++ + G+P  P + 
Sbjct: 92  IVFPVLHGPNGEDGTIQGFMETINMPYVGAGVLASANAMDKIMTKYLLQTVGIPQVPFVP 151

Query: 113 VNR----------FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
           V R          F      LI P +V KP   GSS+GI   K +    L      ++ +
Sbjct: 152 VLRSDWKGNPKEVFEKCEGSLIYPVFV-KPANMGSSVGI--SKVENREELQEALEEAFRY 208

Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKI 219
             + ++EQ ++  E+   ++G+  +  T   E+ V    FY Y+ KY +      +PA +
Sbjct: 209 DARAIVEQGIEAREIEVAILGNEDVRTTLPGEV-VKDVAFYDYDAKYINNTIEMQIPAHV 267

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279
           P ++  + Q  A  A+  +   G+SR DF       ++F  E+N  PG T  S++P +  
Sbjct: 268 PEEVAHQAQEYAKKAYIMLDGSGLSRCDFFLTS-KNELFLNELNTMPGFTDFSMYPLLWE 326

Query: 280 YAGYSFRELLLWMVEDA 296
             G  + +L+  +++ A
Sbjct: 327 NMGLKYSDLIEELIQLA 343


>gi|257418442|ref|ZP_05595436.1| D-alanyl-D-alanine ligase [Enterococcus faecalis T11]
 gi|257160270|gb|EEU90230.1| D-alanyl-D-alanine ligase [Enterococcus faecalis T11]
 gi|315165081|gb|EFU09098.1| D-ala D-ala ligase [Enterococcus faecalis TX1302]
 gi|315167892|gb|EFU11909.1| D-ala D-ala ligase [Enterococcus faecalis TX1341]
 gi|315574117|gb|EFU86308.1| D-ala D-ala ligase [Enterococcus faecalis TX0309B]
          Length = 356

 Score =  108 bits (271), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 75/257 (29%), Positives = 129/257 (50%), Gaps = 18/257 (7%)

Query: 53  LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
           + F VLHG  GEDG +Q  +E + +PY  +G+LASA +MDK+ +K ++ + G+P  P + 
Sbjct: 92  IVFPVLHGPNGEDGTIQGFMETINMPYVGAGVLASANAMDKIMTKYLLQTVGIPQVPFVP 151

Query: 113 VNR----------FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
           V R          F      LI P +V KP   GSS+GI   K +    L      ++ +
Sbjct: 152 VLRSDWKGNPKEVFEKCEGSLIYPVFV-KPANMGSSVGI--SKVENREELQEALEEAFRY 208

Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKI 219
             + ++EQ ++  E+   ++G+  +  T   E+ V    FY Y+ KY +      +PA +
Sbjct: 209 DARAIVEQGIEAREIEVAILGNEDVRTTLPGEV-VKDVAFYDYDAKYINNTIEMQIPAHV 267

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279
           P ++  + Q  A  A+  +   G+SR DF       ++F  E+N  PG T  S++P +  
Sbjct: 268 PEEVAHQAQEYAKKAYIMLDGSGLSRCDFFLTS-KNELFLNELNTMPGFTDFSMYPLLWE 326

Query: 280 YAGYSFRELLLWMVEDA 296
             G  + +L+  +++ A
Sbjct: 327 NMGLKYSDLIEELIQLA 343


>gi|212697006|ref|ZP_03305134.1| hypothetical protein ANHYDRO_01571 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212676004|gb|EEB35611.1| hypothetical protein ANHYDRO_01571 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 352

 Score =  108 bits (271), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 87/340 (25%), Positives = 154/340 (45%), Gaps = 53/340 (15%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR---------------------- 40
           +L GG SSE +++L S    +  L    +K+  + VD+                      
Sbjct: 10  LLCGGPSSEHDIALRSALNISKNLNKEKYKLKLVYVDKKGRFSKAFDFIDTDDEFDLVKT 69

Query: 41  -------SVGLVLAHLKPDLAFNVL-----HGNFGEDGLVQAILELLEIPYTHSGILASA 88
                  S+   L  LK     N +     HG +GEDG +Q  L+ +++ Y  +G+L+S+
Sbjct: 70  CKENILESISDFLLELKDKDKDNTIIIPCIHGTYGEDGTIQGFLDAIDMAYIGNGLLSSS 129

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVIKPLKGGSSLGII 142
           + MDK+ +  +     +     +     T +       Q  I  P ++KP   GSS+G  
Sbjct: 130 VCMDKVTANDIFEKNKLSQARYLYAKEETFNEDFAKKCQEYIKFPMIVKPSANGSSVG-- 187

Query: 143 VIKKDQSIPLDLLQ--SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD-- 198
            + K ++I  +LL+    +  + +++L+E+ + G E+   V+G+  L  ++     +D  
Sbjct: 188 -VNKAENIE-ELLKFGKEALKYDEKILVEEAIIGQEVEIAVIGENELMASKPGAYTTDHT 245

Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD-FLFDPLSRKV 257
           F  Y+ KY   ++   LP  I  ++ KE+   A   ++A GC+G +R D FL D    K 
Sbjct: 246 FLDYDAKYFDKSTKEELPYPIDENLEKELLEFAKKCYKACGCQGFARVDIFLKD---NKF 302

Query: 258 FWLEINVQPGMTPVSIFPEMAAYA-GYSFRELLLWMVEDA 296
           +  EIN  PG TP S F  +   +    F E+L  ++E+ 
Sbjct: 303 YINEINTFPGFTPTSFFARLCKISFNLEFEEILNMLIEEG 342


>gi|227554956|ref|ZP_03985003.1| D-alanine--D-alanine ligase [Enterococcus faecalis HH22]
 gi|307286653|ref|ZP_07566739.1| D-ala D-ala ligase [Enterococcus faecalis TX0109]
 gi|227175899|gb|EEI56871.1| D-alanine--D-alanine ligase [Enterococcus faecalis HH22]
 gi|306502131|gb|EFM71415.1| D-ala D-ala ligase [Enterococcus faecalis TX0109]
 gi|315581762|gb|EFU93953.1| D-ala D-ala ligase [Enterococcus faecalis TX0309A]
          Length = 351

 Score =  108 bits (271), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 74/255 (29%), Positives = 128/255 (50%), Gaps = 18/255 (7%)

Query: 53  LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
           + F VLHG  GEDG +Q  +E + +PY  +G+LASA +MDK+ +K ++ + G+P  P + 
Sbjct: 87  IVFPVLHGPNGEDGTIQGFMETINMPYVGAGVLASANAMDKIMTKYLLQTVGIPQVPFVP 146

Query: 113 VNR----------FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
           V R          F      LI P +V KP   GSS+GI   K +    L      ++ +
Sbjct: 147 VLRSDWKGNPKEVFEKCEGSLIYPVFV-KPANMGSSVGI--SKVENREELQEALEEAFRY 203

Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKI 219
             + ++EQ ++  E+   ++G+  +  T   E+ V    FY Y+ KY +      +PA +
Sbjct: 204 DARAIVEQGIEAREIEVAILGNEDVRTTLPGEV-VKDVAFYDYDAKYINNTIEMQIPAHV 262

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279
           P ++  + Q  A  A+  +   G+SR DF       ++F  E+N  PG T  S++P +  
Sbjct: 263 PEEVAHQAQEYAKKAYIMLDGSGLSRCDFFLTS-KNELFLNELNTMPGFTDFSMYPLLWE 321

Query: 280 YAGYSFRELLLWMVE 294
             G  + +L+  +++
Sbjct: 322 NMGLKYSDLIEELIQ 336


>gi|292558656|gb|ADE31657.1| D-alanine--D-alanine ligase [Streptococcus suis GZ1]
          Length = 341

 Score =  108 bits (271), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 88/298 (29%), Positives = 145/298 (48%), Gaps = 44/298 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           + +L GG S+EREVS+ S ++   A+    F V    + ++   +               
Sbjct: 24  LILLYGGRSAEREVSVLSAESVMRAINYDKFFVKTYFISQTGDFIKTQEFSQTPSADEKL 83

Query: 49  -----------LKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
                      ++P        + F VLHG  GEDG +Q  LE+L +PY  + IL+S+++
Sbjct: 84  MTNATIVEEQKIRPSDIYEEKAVVFPVLHGPMGEDGSIQGFLEVLRMPYVGTNILSSSVA 143

Query: 91  MDKMRSKQVVSSCGVPVCPSILV------NRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
           MDK+ +K+V+ S G+   P + V      +    + +  ++ P  +KP   GSS+GI   
Sbjct: 144 MDKITTKRVLESAGISQVPYVAVIEGENIDDKIAEIEGKLTYPVFVKPANMGSSVGI--S 201

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYS 201
           K +    L      ++ +  ++L+EQ V+  E+  G++G+A +  T   E+ V    FY 
Sbjct: 202 KAEDLAGLRKALDLAFKYDSRVLVEQGVNAREIEVGLLGNADVKTTLPGEV-VKDVAFYD 260

Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF--LFDPLSRKV 257
           Y+ KY     T  +PAKI   I   ++  A  A +AIG  G+SR DF  LF  LS+K+
Sbjct: 261 YDAKYIDNKITMEIPAKIDESIMDIMRDNAAKAFRAIGGCGLSRCDFFPLFSLLSKKM 318


>gi|254507725|ref|ZP_05119857.1| D-alanine--D-alanine ligase [Vibrio parahaemolyticus 16]
 gi|219549422|gb|EED26415.1| D-alanine--D-alanine ligase [Vibrio parahaemolyticus 16]
          Length = 330

 Score =  108 bits (270), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 95/325 (29%), Positives = 154/325 (47%), Gaps = 34/325 (10%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDA-GFKVSQIDVD----RSVGLVLAHL-------- 49
           +L GG SSE EVS+ S     S L+    F V ++++      + G  LA+L        
Sbjct: 8   LLCGGGSSEHEVSILSANFIQSQLQKTPEFNVVRVEMKPDGWYTDGGALAYLDTNAGTLN 67

Query: 50  ------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103
                 K D     +HG  GE G +Q++LEL  IPY   G  AS  S +K+ SK    + 
Sbjct: 68  TDESTIKLDFVVPCIHGYPGETGDIQSMLELSGIPYLGCGPEASTNSFNKITSKLWYDAL 127

Query: 104 GVPVCPSILVNR-----FTMDSQHLISPPYV-IKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
           G+P  P + ++      +    + L     + +K  + GSS+G   +  +  +   L  +
Sbjct: 128 GIPNTPYLFLSNNDDIAYAQTKEALAKWGTIFVKAARQGSSVGCYKVSDESQLKQSL--N 185

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKY--SSLNS 211
            ++ + DQ+L+E+ V   EL          L V+   EI  P+  FYSYE KY  SS ++
Sbjct: 186 DAFGYSDQVLVEKAVKPRELEVAAYEYQGQLYVSKPGEIKAPEDAFYSYEEKYSASSHST 245

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271
           T V    +     + ++  +      +  R +SR DF   P   +++  E+N  PGMTP+
Sbjct: 246 TDVEAENLTEQQLETIRVNSLKVFTQMRLRHLSRIDFFLTP-EGEIYLNEVNTFPGMTPI 304

Query: 272 SIFPEMAAYAGYSFRELLLWMVEDA 296
           S+FP+M  + G+SF E L   V+++
Sbjct: 305 SMFPKMLEHNGHSFSEFLADCVKNS 329


>gi|227486334|ref|ZP_03916650.1| D-alanine--D-alanine ligase [Anaerococcus lactolyticus ATCC 51172]
 gi|227235745|gb|EEI85760.1| D-alanine--D-alanine ligase [Anaerococcus lactolyticus ATCC 51172]
          Length = 347

 Score =  108 bits (270), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 65/231 (28%), Positives = 119/231 (51%), Gaps = 12/231 (5%)

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116
           V+HG +GEDG +Q  L+ + + Y  +G+L+SA+ MDK+ S  +     +         + 
Sbjct: 94  VVHGTYGEDGTIQGFLDAVGLKYIGNGLLSSAICMDKVTSNDIFEKSKLRQAKYKYCYKE 153

Query: 117 TMDSQHL------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
             D   +      +  P ++KP   GSS+G+  ++  +      L++  ++   +LL+E+
Sbjct: 154 DFDDDFMDSCIAYVGLPLIVKPSANGSSVGVSRVENKKDFKKAGLEALKYDR--KLLVEE 211

Query: 171 YVDGIELTCGVMGDA-SLDVTEIAVPKSD--FYSYELKYSSLNSTHVLPAKIPLDIYKEV 227
            + G E+   V+GD+ ++DV++ A   +D  F  ++ KY S ++   LP K+  +  ++ 
Sbjct: 212 LIIGQEIELAVLGDSDNIDVSDPAAYITDHVFLDWDAKYFSKSTREELPYKMDENDKQKA 271

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278
           +  A   ++A GC G +R D  +    R+ +  EIN  PG TP S F  MA
Sbjct: 272 KDFARACYKAAGCEGFARVDIFYGN-DRQFYINEINTFPGFTPSSFFARMA 321


>gi|228469448|ref|ZP_04054456.1| D-ala D-ala ligase [Porphyromonas uenonis 60-3]
 gi|228309023|gb|EEK17666.1| D-ala D-ala ligase [Porphyromonas uenonis 60-3]
          Length = 329

 Score =  108 bits (270), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 87/325 (26%), Positives = 149/325 (45%), Gaps = 36/325 (11%)

Query: 1   MAVLMGGISSEREVSLSSGK-------------------ACASALEDAGFKVSQIDVDRS 41
           +A++ GG S E EVS  S +                   A A ++ DA  +   ID    
Sbjct: 6   IAIICGGYSGEAEVSQRSAQTILKQIDQSLFTPYLVTITADAWSVTDATGREGTIDRALV 65

Query: 42  VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
                  +   +A+  +HG  GE+GL+Q  L++L IPYT  G+L  AL+ +K      ++
Sbjct: 66  ARFGAEEVTFAVAYITIHGTPGENGLLQGYLDMLGIPYTTGGVLCEALTFNKEACNAYLA 125

Query: 102 SCGVPVCPSILVNRFTM-----DSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLD 153
             G+ +  S  ++  T      + Q + S    P  +KP  GGSS+    I++   +   
Sbjct: 126 HHGLRIARSQRLHNQTKELSPEEQQQIESTLRLPLFVKPNTGGSSIATTRIEQWDQLATA 185

Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCG--VMGDA--SLDVTEIAVPKSDFYSYELKYSSL 209
           ++   ++     +L+E+ + G E+TCG  ++ D   +L VTE+ V    F+ Y+ KY   
Sbjct: 186 VV--DAYTAAPDVLVEECIVGTEVTCGCVILPDEAFALPVTEV-VAHDTFFDYDAKYYG- 241

Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
            S  + PA+I  ++ + VQ  +      + C G  R DF+ +        LE+N  PGMT
Sbjct: 242 KSDEITPARISPELTQRVQETSLTIAHLLDCYGFVRIDFIIEADGIPTL-LEVNTTPGMT 300

Query: 270 PVSIFPEMAAYAGYSFRELLLWMVE 294
             S  P+    AG    +L+  +++
Sbjct: 301 EASFIPQQVRAAGLQLSDLITRIIK 325


>gi|325849556|ref|ZP_08170794.1| D-ala D-ala ligase N-terminal domain protein [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
 gi|325480037|gb|EGC83114.1| D-ala D-ala ligase N-terminal domain protein [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
          Length = 348

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 86/340 (25%), Positives = 154/340 (45%), Gaps = 53/340 (15%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR---------------------- 40
           +L GG SSE +++L S    +  L    +K+  + VD+                      
Sbjct: 6   LLCGGPSSEHDIALRSALNISKNLNKEKYKLKLVYVDKKGRFSKAFDFIDTDDEFDLVKT 65

Query: 41  -------SVGLVLAHLKPDLAFNVL-----HGNFGEDGLVQAILELLEIPYTHSGILASA 88
                  S+   L  LK     N +     HG +GEDG +Q  L+ +++ Y  +G+L+S+
Sbjct: 66  CKENILESISDFLLELKDKDKDNTIIIPCIHGTYGEDGTIQGFLDAIDMAYIGNGLLSSS 125

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVIKPLKGGSSLGII 142
           + MDK+ +  +     +     +     T +       Q  I  P ++KP   GSS+G  
Sbjct: 126 VCMDKVTANDIFEKNKLSQARYLYAKEETFNEDFAKKCQEYIKFPMIVKPSANGSSVG-- 183

Query: 143 VIKKDQSIPLDLLQ--SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD-- 198
            + K ++I  +LL+    +  + +++L+E+ + G E+   ++G+  L  ++     +D  
Sbjct: 184 -VNKAENIK-ELLKFGKEALKYDEKILVEEAIIGQEVEIAIIGENELMASKPGAYTTDHT 241

Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD-FLFDPLSRKV 257
           F  Y+ KY   ++   LP  I  ++ KE+   A   ++A GC+G +R D FL D    K 
Sbjct: 242 FLDYDAKYFDKSTKEELPYPIDENLEKELLEFAKKCYKACGCQGFARVDIFLKD---NKF 298

Query: 258 FWLEINVQPGMTPVSIFPEMAAYA-GYSFRELLLWMVEDA 296
           +  EIN  PG TP S F  +   +    F E+L  ++E+ 
Sbjct: 299 YINEINTFPGFTPTSFFARLCKISFNLEFEEILDMLIEEG 338


>gi|260770475|ref|ZP_05879408.1| D-alanine--D-alanine ligase [Vibrio furnissii CIP 102972]
 gi|260615813|gb|EEX40999.1| D-alanine--D-alanine ligase [Vibrio furnissii CIP 102972]
          Length = 334

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 97/329 (29%), Positives = 149/329 (45%), Gaps = 40/329 (12%)

Query: 3   VLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDVDRS-----VGLVLA--------- 47
           +L GG SSE EVSL S       L     F V ++++ +       G ++          
Sbjct: 8   LLCGGGSSEHEVSLVSANYLQQQLSLTPDFDVVRVEMKKEGWFSDTGEIVYLDTNSATLN 67

Query: 48  ----HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103
                LK D     +HG  GE G +Q++ EL  IPY   G  AS+ S +K+ SK    + 
Sbjct: 68  GEGLSLKIDFVIPCIHGYPGETGDIQSMFELAGIPYLGCGPEASSNSFNKITSKLWYDAL 127

Query: 104 GVPVCPSILVNRFTMDSQHLISPPYV------IKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
           G+P  P + ++     +       +       IK  + GSS+G   + K+  I       
Sbjct: 128 GIPNTPYLFLSENNAQALKNTQDAFAKWGSLFIKAARQGSSVGCYKVTKEDQI--AAAID 185

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYS--SLNS 211
           +++++ +Q+L+EQ V   EL       +  L +T   EI  P+  FYSYE KYS  S + 
Sbjct: 186 AAFSYSEQVLVEQAVKPRELEVAAYEMNGELFITKPGEIIAPEDAFYSYEEKYSTDSHSR 245

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271
           T V    +  +    + ++A      +  R +SR DF   P    V+  E+N  PGMTP+
Sbjct: 246 TEVEAGNLTDEQQALIHQVAQKVFTHMKLRHLSRIDFFLTPEGH-VYLNEVNTFPGMTPI 304

Query: 272 SIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           S+FP+M A  G+ F E L      A C+R
Sbjct: 305 SMFPKMLANNGHQFDEFL------ADCVR 327


>gi|221195322|ref|ZP_03568378.1| D-alanine--D-alanine ligase [Atopobium rimae ATCC 49626]
 gi|221185225|gb|EEE17616.1| D-alanine--D-alanine ligase [Atopobium rimae ATCC 49626]
          Length = 333

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 91/330 (27%), Positives = 149/330 (45%), Gaps = 46/330 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AV+MGG S ER  SL SG+  + +L  +GF V  +D D  +   L   KPD+AF  +HG
Sbjct: 5   VAVIMGGTSFERNFSLLSGRLVSESLARSGFDVLTLDADAHLVDTLRAEKPDVAFICMHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDK------MRS------------------ 96
             GEDG V A+LE L IPY  S   +   + +K      MR                   
Sbjct: 65  AGGEDGAVPALLEFLRIPYVGSRPASCRAAWNKADMPFLMRRVYGKHESLVVWPPQLVLP 124

Query: 97  KQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
                  G      I+  R    S      P  +KP+ GGS++G+  + K + +   L+ 
Sbjct: 125 ASAFKDLGAAKALDIIPERLGGGSGF----PLAVKPVHGGSAMGLSRVDKPEDLGHALMG 180

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMG----DASLDVTEIAVPKSDFYSYELKYSSLNST 212
           + +++  D ++I+ +V+G+E++  V+G    +  L   EI V K   Y  + +  +    
Sbjct: 181 ALAYD--DSVIIQHWVEGVEVSVTVLGTPGSEKVLPPVEIEV-KEGIYDTDARLETSRVN 237

Query: 213 HVLPAKIP--------LDIYK-EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
           H  P +          +D  +  +++ A   ++A  CR  +R DF++D    KV  + + 
Sbjct: 238 HFCPVRDESLAALGSNVDNARVALEQAACEVYRAYDCRDFARVDFIWD--GHKVMVMGLK 295

Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
             PG+T  S+ P     AG    E+L  +V
Sbjct: 296 TFPGLTETSLVPMAIEAAGLKRDEVLAHLV 325


>gi|23328865|gb|AAC43218.2| D-alanine:D-alanine ligase-related protein [Enterococcus faecalis]
          Length = 348

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 74/257 (28%), Positives = 128/257 (49%), Gaps = 18/257 (7%)

Query: 53  LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
           + F VLHG  GEDG +Q  +E + +PY  +G+LAS  +MDK+ +K ++ + G+P  P + 
Sbjct: 92  IVFPVLHGPNGEDGTIQGFMETINMPYVGAGVLASVNAMDKIMTKYLLQTVGIPQVPFVP 151

Query: 113 VNR----------FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
           V R          F      LI P +V KP   GSS+GI   K +    L      ++ +
Sbjct: 152 VLRSDWKGNPKEVFEKCEGSLIYPVFV-KPANMGSSVGI--SKVENREELQEALEEAFRY 208

Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKI 219
             + ++EQ ++  E+   ++G+  +  T   E+ V    FY Y+ KY +      +PA +
Sbjct: 209 DARAIVEQGIEAREIEVAILGNEDVRTTLPGEV-VKDVAFYDYDAKYINNTIEMQIPAHV 267

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279
           P ++  + Q  A  A+  +   G+SR DF       ++F  E+N  PG T  S++P +  
Sbjct: 268 PEEVAHQAQEYAKKAYIMLDGSGLSRCDFFLTS-KNELFLNELNTMPGFTDFSMYPLLWE 326

Query: 280 YAGYSFRELLLWMVEDA 296
             G  + +L+  +++ A
Sbjct: 327 NMGLKYSDLIEELIQLA 343


>gi|741411|prf||2007289B D-Ala D-Ala ligase
          Length = 348

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 74/257 (28%), Positives = 128/257 (49%), Gaps = 18/257 (7%)

Query: 53  LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
           + F VLHG  GEDG +Q  +E + +PY  +G+LAS  +MDK+ +K ++ + G+P  P + 
Sbjct: 92  IVFPVLHGPNGEDGTIQGFMETINMPYVGAGVLASVNAMDKIMTKYLLQTVGIPQVPFVP 151

Query: 113 VNR----------FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
           V R          F      LI P +V KP   GSS+GI   K +    L      ++ +
Sbjct: 152 VLRSDWKGNPKEVFEKCEGSLIYPVFV-KPANMGSSVGI--SKVENREELQEALEEAFRY 208

Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKI 219
             + ++EQ ++  E+   ++G+  +  T   E+ V    FY Y+ KY +      +PA +
Sbjct: 209 DARAIVEQGIEAREIEVAILGNEDVRTTLPGEV-VKDVAFYDYDAKYINNTIEMQIPAHV 267

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279
           P ++  + Q  A  A+  +   G+SR DF       ++F  E+N  PG T  S++P +  
Sbjct: 268 PEEVAHQAQEYAKKAYIMLDGSGLSRCDFFLTS-KNELFLNELNTMPGFTDFSMYPLLWE 326

Query: 280 YAGYSFRELLLWMVEDA 296
             G  + +L+  +++ A
Sbjct: 327 NMGLKYSDLIEELIQLA 343


>gi|299143291|ref|ZP_07036371.1| D-alanine--D-alanine ligase [Peptoniphilus sp. oral taxon 386 str.
           F0131]
 gi|298517776|gb|EFI41515.1| D-alanine--D-alanine ligase [Peptoniphilus sp. oral taxon 386 str.
           F0131]
          Length = 389

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 80/266 (30%), Positives = 128/266 (48%), Gaps = 27/266 (10%)

Query: 48  HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV 107
           + K D  F  LHG +GEDG  Q +LEL+++PY   G++++A+ MDK+  K+V  S  +P+
Sbjct: 102 YAKIDAVFPALHGTYGEDGCFQGLLELIQVPYVGCGVMSAAVGMDKVVMKKVFQSENIPM 161

Query: 108 CPSILVNRFTMDSQHLI-------SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160
                  R    ++  I            +KP   GSS+GI      +     +  +  +
Sbjct: 162 TEYFYFYRDEWKNRDEIIEKAEKLGYSLFVKPANLGSSVGISKATNREEFVEAVEIAVHY 221

Query: 161 NHGDQLLIEQYVDG-IELTCGVM---GDASLDVTEIAVPKSDFYSYELKYSS-------- 208
           +   ++++E+ V+   E+   VM   GD  +   E  +   D   YE KY +        
Sbjct: 222 DR--KIIVERAVENPREINAAVMGYEGDIIVSACEEPIGWKDLLKYEDKYIAGSKGSKGM 279

Query: 209 LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268
            N    LPA IP D+  E+++ A LA +AI   G +R DFL D    KV+  EIN  PG 
Sbjct: 280 KNKKKNLPADIPEDVRAEIEKYAHLAFRAIDGMGDARIDFLLD--GDKVYVNEINTLPGS 337

Query: 269 TPVSIFPEMAAYAGYSFRELLLWMVE 294
               ++ E    +G SF+EL+  ++E
Sbjct: 338 IAFYLWEE----SGISFKELITRLIE 359


>gi|306820571|ref|ZP_07454202.1| D-alanine-D-alanine ligase [Eubacterium yurii subsp. margaretiae
           ATCC 43715]
 gi|304551388|gb|EFM39348.1| D-alanine-D-alanine ligase [Eubacterium yurii subsp. margaretiae
           ATCC 43715]
          Length = 401

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 71/244 (29%), Positives = 122/244 (50%), Gaps = 30/244 (12%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+AF ++HG   EDG +Q +L +L IPY    + +SA+ MDK   K ++    +PV   +
Sbjct: 101 DIAFPIVHGTNVEDGTLQGMLNMLGIPYVGCDVYSSAVGMDKYAMKCILKENNIPVLDCL 160

Query: 112 LVNRFTM---------DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
           +VN+F           + +   + P ++KP   GSS+GI + + D S+   L  +  +++
Sbjct: 161 VVNKFKYLENSDEVEENIKSKFNYPVIVKPFNLGSSVGIKIARDDSSLKDALDYAFGFSY 220

Query: 163 GDQLLIEQYVDGI-ELTCGVMGD---ASLDVTEIAVPKSDFYSYELKYSSLNSTHV---- 214
             +L++E  +  I E+ C V+GD   AS    E  +   +  SY+ KY S +        
Sbjct: 221 --KLIVEPAITSIKEVNCSVLGDMESASASECEQPIGSGEILSYQDKYESSSGKKTGTSN 278

Query: 215 -------LPAKIPLDI----YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
                  L  K+P DI     + ++++A    + +GC G++R DF+ D    K++  EIN
Sbjct: 279 AKGTMESLSRKLPADIDETTRETIRKMAVDTFKTLGCSGVARIDFIIDEEENKIYVNEIN 338

Query: 264 VQPG 267
             PG
Sbjct: 339 TIPG 342


>gi|153827363|ref|ZP_01980030.1| D-alanine--D-alanine ligase [Vibrio cholerae MZO-2]
 gi|297580376|ref|ZP_06942303.1| D-alanine-D-alanine ligase [Vibrio cholerae RC385]
 gi|149738732|gb|EDM53074.1| D-alanine--D-alanine ligase [Vibrio cholerae MZO-2]
 gi|297536022|gb|EFH74856.1| D-alanine-D-alanine ligase [Vibrio cholerae RC385]
          Length = 334

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 99/326 (30%), Positives = 153/326 (46%), Gaps = 36/326 (11%)

Query: 3   VLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDVDR----SVGLVLAHLKP------ 51
           +L GG SSE E+SL S       LE    F V ++++ +    S    L +L        
Sbjct: 8   LLCGGGSSEHEISLVSANYIQQQLELTPEFHVIRVEMKKEGWFSEQGALVYLDTNSATLN 67

Query: 52  --------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103
                   D     +HG  GE G +Q++LEL  IPY   G  ASA S +K+ SK    + 
Sbjct: 68  SDKASYPIDFVVPCIHGFPGETGDIQSMLELAGIPYLGCGPEASANSFNKITSKLWYDAL 127

Query: 104 GVPVCPSILVNRFTMDSQHLISPPY------VIKPLKGGSSLGII-VIKKDQSIPLDLLQ 156
           G+P  P + + + T  S       +       +K  + GSS+G   V  +DQ  P     
Sbjct: 128 GIPNTPYLFLTQNTPSSIEKAKQAFGHWGSIFVKAARQGSSVGCYKVTTEDQIAPAI--- 184

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYS-SLNS 211
            +++   +Q+L+EQ V   EL       +  L ++   E+  P+  FYSYE KYS + ++
Sbjct: 185 EAAFGFSEQVLVEQAVKPRELEVSAYEMNGKLYISKPGEVIAPEGTFYSYEEKYSANSHA 244

Query: 212 THVLPAKIPLDIYKE-VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270
             VL A+   + +KE +Q  A      +  R +SR DF F     +++  E+N  PGMTP
Sbjct: 245 RTVLEAENLTEKHKELIQTYAERVFIHMNLRHLSRIDF-FLTQEGQIYLNEVNTFPGMTP 303

Query: 271 VSIFPEMAAYAGYSFRELLLWMVEDA 296
           +S+FP+M  + G+ F E L   V + 
Sbjct: 304 ISMFPKMLEHNGHRFSEFLAQCVTNT 329


>gi|150390714|ref|YP_001320763.1| D-alanine--D-alanine ligase [Alkaliphilus metalliredigens QYMF]
 gi|149950576|gb|ABR49104.1| D-alanine--D-alanine ligase [Alkaliphilus metalliredigens QYMF]
          Length = 339

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 86/280 (30%), Positives = 141/280 (50%), Gaps = 23/280 (8%)

Query: 35  QIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ--AILELLEIPYTHSGILASALSMD 92
           +I VD  +   L     D+ FN+  G  GE    Q  A+LE+L IPY  SGILA +L+++
Sbjct: 47  KIQVDEKISENLVKSDVDIVFNLSTGVRGESRQSQIPALLEMLGIPYVGSGILAHSLALN 106

Query: 93  KMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP---PYVIKPLKGGSSLGIIV--IKKD 147
           K  +K++    GVP  P+  V  F    + L S    P + KP   GS  GI V  +  D
Sbjct: 107 KAMAKKIFQYHGVP-TPAFQV--FQTGEEKLDSNLKFPLIAKPACEGSGFGIHVDSVVYD 163

Query: 148 QSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA---------SLDVTEIAVPKSD 198
           +   +  +      +   +L+E++++G E T GV+G+           +D  +I      
Sbjct: 164 EQGLMKKVSELLRQYEPPVLVEEFIEGREFTVGVIGNGESKRILPIMEIDFEDIPEEHGK 223

Query: 199 FYSYELKYSSLNST-HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
           FY++E+K +  + T +  PA I + + K +      A   +GC+ I+R D L    + + 
Sbjct: 224 FYTFEVKNNFGDQTKYHCPASISMALEKSIMENVSKAFDVLGCKDIARVDVLVK--NERP 281

Query: 258 FWLEINVQPGMTPV-SIFPEMAAYAGYSFRELLLWMVEDA 296
           + LEIN  PG+  + S  P+MA  AG S++EL++ ++E A
Sbjct: 282 YILEINSLPGLKHLHSDLPKMAVVAGLSYKELIMEILEVA 321


>gi|148546755|ref|YP_001266857.1| D-alanine--D-alanine ligase [Pseudomonas putida F1]
 gi|148510813|gb|ABQ77673.1| D-alanine--D-alanine ligase [Pseudomonas putida F1]
          Length = 304

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 91/312 (29%), Positives = 150/312 (48%), Gaps = 41/312 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAG-----FKVSQIDVDRSVGLVLAHLKPDLAF 55
           +A++ GG SSEREVSL + +A + +L+        F +S  D    + L LA  K    F
Sbjct: 5   IAIITGGNSSEREVSLQTSEAVSQSLKTLQISHEIFTIS--DYRELLSLDLA--KFTRVF 60

Query: 56  NVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR 115
             LHG FGE+G+ QA LE L IPY      ASA+ MDK+ +K +    G+ V   +    
Sbjct: 61  LALHGGFGENGMAQAYLEGLGIPYNGPSPQASAICMDKLLTKHIARGLGINVANYLYSKN 120

Query: 116 -----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                F   S+ L   P ++KP + G S G+ ++ +D    L    +++      +LIE+
Sbjct: 121 GDDVCFEEISERL-GTPCIVKPNREGCSFGVSLV-RDLKADLQPAINAAAKFHTGILIEE 178

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
           ++ G EL+   +  ++L +  +   +SDF+SY+ K+ S  +   L              L
Sbjct: 179 FISGPELSVCYLNKSTLPIYTVEF-ESDFFSYDAKFISTKTNATLSI------------L 225

Query: 231 AFLAHQAIG--CRGIS--------RSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280
               HQ +   C  I+        R+DF+    + + + +E+N  PG+T  S+FP+    
Sbjct: 226 DRSTHQLVTNYCSAIAEALELDYFRADFIVH--NTEPYLIELNTLPGLTSHSLFPKACQQ 283

Query: 281 AGYSFRELLLWM 292
            G  F +L+L +
Sbjct: 284 HGIEFDKLVLIL 295


>gi|56201416|dbj|BAD72951.1| D-Ala:D-Ala ligase [Enterococcus faecalis]
          Length = 356

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 74/257 (28%), Positives = 128/257 (49%), Gaps = 18/257 (7%)

Query: 53  LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
           + F VLHG  GEDG +Q  +E + +PY  +G+LAS  +MDK+ +K ++ + G+P  P + 
Sbjct: 92  IVFPVLHGPNGEDGTIQGFMETINMPYVGAGVLASVNAMDKIMTKYLLQTVGIPQVPFVP 151

Query: 113 VNR----------FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
           V R          F      LI P +V KP   GSS+GI   K +    L      ++ +
Sbjct: 152 VLRSDWKGNPKEVFEKCEGSLIYPVFV-KPANMGSSVGI--SKVENREELQEALEEAFRY 208

Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKI 219
             + ++EQ ++  E+   ++G+  +  T   E+ V    FY Y+ KY +      +PA +
Sbjct: 209 DARAIVEQGIEAREIEVAILGNEDVRTTLPGEV-VKDVAFYDYDAKYINNTIEMQIPAHV 267

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279
           P ++  + Q  A  A+  +   G+SR DF       ++F  E+N  PG T  S++P +  
Sbjct: 268 PEEVAHQAQEYAKKAYIMLDGSGLSRCDFFLTS-KNELFLNELNTMPGFTDFSMYPLLWE 326

Query: 280 YAGYSFRELLLWMVEDA 296
             G  + +L+  +++ A
Sbjct: 327 NMGLKYSDLIEELIQLA 343


>gi|56201414|dbj|BAD72950.1| D-Ala:D-Ala ligase [Enterococcus faecalis]
          Length = 356

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 73/255 (28%), Positives = 127/255 (49%), Gaps = 18/255 (7%)

Query: 53  LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
           + F VLHG  GEDG +Q  +E + +PY  +G+LAS  +MDK+ +K ++ + G+P  P + 
Sbjct: 92  IVFPVLHGPNGEDGTIQGFMETINMPYVGAGVLASVNAMDKIMTKYLLQTVGIPQVPFVP 151

Query: 113 VNR----------FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
           V R          F      LI P +V KP   GSS+GI   K +    L      ++ +
Sbjct: 152 VLRSDWKGNPKEVFEKCEGSLIYPVFV-KPANMGSSVGI--SKVENREELQEALEEAFRY 208

Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKI 219
             + ++EQ ++  E+   ++G+  +  T   E+ V    FY Y+ KY +      +PA +
Sbjct: 209 DARAIVEQGIEAREIEVAILGNEDVRTTLPGEV-VKDVAFYDYDAKYINNTIEMQIPAHV 267

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279
           P ++  + Q  A  A+  +   G+SR DF       ++F  E+N  PG T  S++P +  
Sbjct: 268 PEEVAHQAQEYAKKAYIMLDGSGLSRCDFFLTS-KNELFLNELNTMPGFTDFSMYPLLWE 326

Query: 280 YAGYSFRELLLWMVE 294
             G  + +L+  +++
Sbjct: 327 NMGLKYSDLIEELIQ 341


>gi|323492914|ref|ZP_08098055.1| D-alanyl-alanine synthetase A [Vibrio brasiliensis LMG 20546]
 gi|323312849|gb|EGA65972.1| D-alanyl-alanine synthetase A [Vibrio brasiliensis LMG 20546]
          Length = 330

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 97/332 (29%), Positives = 150/332 (45%), Gaps = 46/332 (13%)

Query: 3   VLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDV---------------DRSVGLVL 46
           +L GG SSE EVSL S     S LE  + F V ++++               D + G + 
Sbjct: 8   LLCGGGSSEHEVSLVSANFLQSQLELTSDFNVIRVEMKTDGWYTDKGELAYLDTNSGTLN 67

Query: 47  AH---LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103
                +K D     +HG  GE G +Q++LEL  IPY   G  AS  S +K+ SK    + 
Sbjct: 68  TDKESVKLDFIVPCIHGFPGETGDIQSMLELAGIPYLGCGPEASTNSFNKITSKLWYDAL 127

Query: 104 GVPVCPSILVNRFTMDSQHLISP---------PYVIKPLKGGSSLGIIVIKKDQSIPLDL 154
           G+P  P I ++    + QH                +K  + GSS+G   +   + +   L
Sbjct: 128 GIPNTPYIFLSE---NDQHAYQASKEAFEKWGSVFVKAARQGSSVGCYKVTDIEQLQQAL 184

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKY--SS 208
             + ++ + DQ+L+EQ V   EL          L ++   E+  P+  FYSYE KY  SS
Sbjct: 185 --NDAFGYSDQVLVEQAVKPRELEVAAYQYQGELHISKPGEVIAPEDAFYSYEEKYSASS 242

Query: 209 LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268
            + T V  + +     + ++  +      +  R +SR DF   P    ++  E+N  PGM
Sbjct: 243 HSKTEVEASNLTEQQLEIIRTSSEKVFTQMRLRHLSRIDFFLTP-EGNIYLNEVNTFPGM 301

Query: 269 TPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           TP+S+FP+M    G+ F E L      A C+R
Sbjct: 302 TPISMFPKMLENNGHKFSEFL------ADCVR 327


>gi|227488097|ref|ZP_03918413.1| D-alanyl-alanine synthetase A [Corynebacterium glucuronolyticum
           ATCC 51867]
 gi|227541494|ref|ZP_03971543.1| D-alanyl-alanine synthetase A [Corynebacterium glucuronolyticum
           ATCC 51866]
 gi|227091959|gb|EEI27271.1| D-alanyl-alanine synthetase A [Corynebacterium glucuronolyticum
           ATCC 51867]
 gi|227182776|gb|EEI63748.1| D-alanyl-alanine synthetase A [Corynebacterium glucuronolyticum
           ATCC 51866]
          Length = 315

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 72/256 (28%), Positives = 127/256 (49%), Gaps = 18/256 (7%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+ F VLHG  GEDG +Q + EL  +PY  +G+LASA  MDK  +K++    G+P+   +
Sbjct: 61  DVIFPVLHGLNGEDGTIQGLFELSGVPYVGNGVLASACGMDKQYTKKLCKLAGLPIGKDL 120

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK----DQSI-------PLDLLQSSSW 160
           ++          ++ P  +KP +GGSS+GI  ++     D++I       P  +++    
Sbjct: 121 VLEGGEEFIPGTLNFPVYVKPARGGSSIGISRVEDVSGIDEAIRLARESDPKVIIEEEIK 180

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
               +  + +Y DG      V+  A  ++      ++ FY +  KY     +  +PA++ 
Sbjct: 181 GIEVECGVLEYPDGR-----VVAAAPAELIGTEDGEAGFYDFSAKYLDGQVSAHIPARLS 235

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280
            +    V+ +A    +A+ C G++R DF            EIN  PG TP+S++P++   
Sbjct: 236 EEETARVKEIAVQTFKALNCNGLARVDFFV--TEHGPVINEINTLPGFTPISMYPQVFQA 293

Query: 281 AGYSFRELLLWMVEDA 296
            G S+ +LL  ++E A
Sbjct: 294 EGISYGDLLHILIEQA 309


>gi|291530203|emb|CBK95788.1| D-alanine--D-alanine ligase [Eubacterium siraeum 70/3]
          Length = 397

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 78/265 (29%), Positives = 130/265 (49%), Gaps = 29/265 (10%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+AF ++HG   EDG+ Q  L+ + +PY    +++SA+ MDK   K V    G+PV    
Sbjct: 101 DVAFPIVHGTNVEDGVFQGYLQTIGVPYVGCDVISSAVGMDKYVMKTVFKDNGIPVLDGT 160

Query: 112 LV---------NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
           ++         +    D +  I+ P ++KP+  GSS+GI++   D+   LD    +++ +
Sbjct: 161 VIHISDYAKDADAVKADIKAKIAYPLIVKPINLGSSVGIMIAHNDEQ--LDEALDNAFTY 218

Query: 163 GDQLLIEQYVDGI-ELTCGVMGD-ASLDVTEIAVP--KSDFYSYELKY------SSLNST 212
             +LL+E  +  + E+ C V GD A+   +E   P    +  SYE KY         +  
Sbjct: 219 ASKLLVEPAITNLKEINCSVCGDYATAHASECEEPVNTDEILSYEDKYIAGDKGGKSSGM 278

Query: 213 HVLPAKIPLDI----YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268
             L  KIP DI     ++++ LA  A +++G  G SR DF+ D  +  V+  EIN  PG 
Sbjct: 279 ATLKRKIPADISDKTREQIRTLAVKAFRSLGASGTSRIDFMIDMDNGNVYLNEINTIPGS 338

Query: 269 TPVSIFPEMAAYAGYSFRELLLWMV 293
               ++  +    G  + ELL  M+
Sbjct: 339 LAFYLWEPV----GVKYSELLDEMI 359


>gi|258647059|ref|ZP_05734528.1| D-alanine--D-alanine ligase [Prevotella tannerae ATCC 51259]
 gi|260853175|gb|EEX73044.1| D-alanine--D-alanine ligase [Prevotella tannerae ATCC 51259]
          Length = 337

 Score =  107 bits (266), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 87/331 (26%), Positives = 150/331 (45%), Gaps = 45/331 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV----------------DRSVGL 44
           +A++ GG SSE +VSL S     S ++   + V  +++                DR+   
Sbjct: 10  IAIVAGGDSSEHDVSLRSAAGILSFMDSQKYDVYIVEIKGNNWTAHYGQEDCPIDRNDFT 69

Query: 45  VLAHLKP---DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
             A       D A+  +HG  GE+G++Q   +L+ IPY+ S +L  AL+ +K      + 
Sbjct: 70  FTATDGKHAFDFAYITIHGTPGENGILQGYFDLIGIPYSTSDVLVEALTFNKYALNTFLR 129

Query: 102 SC---GVPVCPSILVNRFTMDSQ-----HLISPPYVIKPLKGGSSLGIIVIKK----DQS 149
           S     + +  +ILV +   +         +  P  +KP  GGSS G+  +K       +
Sbjct: 130 SAADKALNIADAILVRKGETEPNDAYIVERLGLPCFVKPNAGGSSFGVTKVKTIDAVRPA 189

Query: 150 IPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSYELK 205
           I   LL+S      D+++IE+ + G E+TCG         +  +TE+ V + +F+ Y+ K
Sbjct: 190 IEKALLES------DEVMIEKMIVGTEITCGAYKKGNEIITFPITEV-VTEEEFFDYDAK 242

Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS--RKVFWLEIN 263
           Y+      + PA++     + V  +    +  + C GI R D++        ++  LEIN
Sbjct: 243 YNG-KVDEITPARLAEATAERVSAMTKSIYGLLNCYGIIRIDYILSGKKGQEEINLLEIN 301

Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             PGMT  S  P+    AG    E+L  ++E
Sbjct: 302 TTPGMTTTSFIPQQVRAAGLEIAEVLSDIIE 332


>gi|150020384|ref|YP_001305738.1| D-alanine--D-alanine ligase [Thermosipho melanesiensis BI429]
 gi|166198511|sp|A6LKA2|DDL_THEM4 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|149792905|gb|ABR30353.1| D-alanine--D-alanine ligase [Thermosipho melanesiensis BI429]
          Length = 361

 Score =  107 bits (266), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 70/255 (27%), Positives = 136/255 (53%), Gaps = 26/255 (10%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC--- 108
           D  F V HG  GEDG  Q + E+  IPY+     +SA +MDK+ +K ++    + V    
Sbjct: 94  DFCFLVFHGTNGEDGTFQGMCEIFGIPYSGCNHFSSAFTMDKVVTKLLLKEKEISVVDFE 153

Query: 109 -PSILVNRFTMDSQHLISPPYVIKPLKGGSSLGI--IVIKKD--QSIPLDLLQSSSWNHG 163
             + +   F    +  +  P ++KP + GSS+G+  +V +K+  +++   LL        
Sbjct: 154 YTTEINEEFFKRCEKNLGYPMIVKPARLGSSIGVSKVVDRKNFEEAVKNVLL------FD 207

Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAV--PKSDFYSYELKYSSLN---STHVLPAK 218
           +++L+E++++  E+ C VMG  ++ V+E+     K+DF+++E KY       S H++PA+
Sbjct: 208 NKVLVEKWINAREINCAVMGYKNIFVSELEEINKKNDFFNFEEKYFKKGKKFSNHIIPAR 267

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278
           I  ++  +++ +A    + + C G  R DFL   ++ K++  EIN  PG     I+ +  
Sbjct: 268 IDENLKNKIKEIAKDTFKILECSGNVRIDFL---IADKIYVNEINTIPGALSFYIWQK-- 322

Query: 279 AYAGYSFRELLLWMV 293
             +G++F +++  M+
Sbjct: 323 --SGFTFSQIIDNMI 335


>gi|325168553|ref|YP_004280343.1| D-alanine-D-alanine ligase protein [Agrobacterium sp. H13-3]
 gi|325064276|gb|ADY67965.1| D-alanine-D-alanine ligase protein [Agrobacterium sp. H13-3]
          Length = 234

 Score =  107 bits (266), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 70/231 (30%), Positives = 126/231 (54%), Gaps = 18/231 (7%)

Query: 77  IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKP 132
           +P    GIL SA ++DK  +KQ++ + G+PV  ++ V+   + S    +  +  P  +KP
Sbjct: 1   MPLVGCGILGSATALDKDIAKQLLRAAGLPVARAVTVHADRVPSFDTLEIALGLPLFVKP 60

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS--LDVT 190
            + GSS+G+  +  +Q     L  +  + H  +LL E+++ G E+ C V+ DA   L V+
Sbjct: 61  ARQGSSVGVRKVSGNQEFAPAL--AEGFKHDRKLLAEEFIRGREIECSVLEDAKGGLFVS 118

Query: 191 E----IAVPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
                I      FYSY+ KY     +   +PA++P ++  +++  A LA +A+GC G++R
Sbjct: 119 RPGEIIPAESHGFYSYDAKYIDDDGAALTVPAELPPEVETKIRETAALAFRALGCDGMAR 178

Query: 246 SDFLFDPLSRKVFWL--EINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            DF    L+  + +L  E+N  PG T +S++ +  A +G S+ E++  +VE
Sbjct: 179 VDFF---LTEDMAFLVNEVNTIPGFTDISMYAKAMAASGVSYPEVIDRLVE 226


>gi|170722835|ref|YP_001750523.1| D-alanine--D-alanine ligase [Pseudomonas putida W619]
 gi|169760838|gb|ACA74154.1| D-alanine--D-alanine ligase [Pseudomonas putida W619]
          Length = 364

 Score =  107 bits (266), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 96/342 (28%), Positives = 158/342 (46%), Gaps = 50/342 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI-------------------DVDRS 41
           +A++ GG SSE  V+L S     +AL   G +V  +                   +VDRS
Sbjct: 6   IALVFGGRSSEHSVALRSASMIHAALMALGHRVHCVGIDREGSWRYQGEPCQFPGEVDRS 65

Query: 42  VGLV-----------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84
             L+                    +  DL F  LHG +GEDG +Q +  +  +P   SG+
Sbjct: 66  APLISIRPGHPSLSYTTQGSDTVEIAIDLLFPALHGRWGEDGTIQGLAAMCGLPCVGSGV 125

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI----SPPYVIKPLKGGSSLG 140
           L SA+SMDK  +K+++ S G+ V P   +N F    + L+    S    +KP   GSS+G
Sbjct: 126 LGSAMSMDKDVTKRMLQSSGLVVGPWRAMN-FMRPWEELVECLGSSTLFVKPANSGSSIG 184

Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM----GDASLDVTEIAVPK 196
             V K   ++      + +     ++L+E  + G E+ CGV+    G  +  V EI   +
Sbjct: 185 --VSKVSNALEYAEAFAIAACQDAKVLVEAEICGREIECGVLELEEGLIASVVGEILKKE 242

Query: 197 SD-FYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
              +Y Y+ KY S +   + +P+ +  DI + +Q L+  A + +  +G +R DF      
Sbjct: 243 GQAYYDYQAKYDSKSGADIRVPSLLAPDIVERIQDLSVQAFRCLELKGYARVDFFLTE-D 301

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             +   E+N  PG T  S++P+M   +GY   +L+  +VE A
Sbjct: 302 GAIILNEVNTLPGFTGSSMYPKMFECSGYPPEKLVGALVEYA 343


>gi|227500315|ref|ZP_03930382.1| D-alanine--D-alanine ligase [Anaerococcus tetradius ATCC 35098]
 gi|227217601|gb|EEI82913.1| D-alanine--D-alanine ligase [Anaerococcus tetradius ATCC 35098]
          Length = 345

 Score =  106 bits (265), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 88/339 (25%), Positives = 149/339 (43%), Gaps = 50/339 (14%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVS---------------QIDVDRSVGLV-- 45
           +L G  SSE ++SL S    +  L +  +K+                +ID      LV  
Sbjct: 6   ILCGSPSSEHDISLRSALNISKNLNEEKYKIKLVYINKEGAYSDSFDKIDTSDEFDLVRD 65

Query: 46  --------LAHL-----KPDLAFNVL----HGNFGEDGLVQAILELLEIPYTHSGILASA 88
                   +A+      K DL+  ++    HG +GEDG +Q +L++  + Y  +G+L+SA
Sbjct: 66  IKVNKAKSIANFLDSLSKEDLSETIIIPAVHGTYGEDGTIQGLLDVAGLKYIGNGLLSSA 125

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNR------FTMDSQHLISPPYVIKPLKGGSSLGII 142
           + MDK+ S  +     +     +  NR      F       I  P ++KP   GSS+G+ 
Sbjct: 126 ICMDKVTSNDIFEKNNLRQAKYLYTNREGFGESFAQKCIDEIGLPLIVKPSANGSSVGVS 185

Query: 143 VIKKDQSIPLDLLQSS--SWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD-- 198
            +   +    +LL++   +  +  ++L+E+ + G E+   V+G  + DV+      SD  
Sbjct: 186 KVTSKE----ELLEAGYLALKYDKKVLVEELIVGQEIEFAVVGHMNPDVSRPGAYISDHT 241

Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
           F  Y+ KY S  +   LP  +  D  KE Q     A++  GC G +R D  +       +
Sbjct: 242 FLDYDAKYFSKTTKESLPYDLDDDKLKEAQDFVRKAYEVCGCEGFARVDIFYGE-DGNFY 300

Query: 259 WLEINVQPGMTPVSIFPEMAAYA-GYSFRELLLWMVEDA 296
             EIN  PG TP S F  +       +F E+L  +++D 
Sbjct: 301 VNEINTFPGFTPSSFFARLCELMYKKNFSEVLDILIDDG 339


>gi|297170214|gb|ADI21252.1| D-alanine-D-alanine ligase and related ATP-grasp enzymes
           [uncultured myxobacterium HF0010_08B07]
          Length = 297

 Score =  106 bits (265), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 82/304 (26%), Positives = 147/304 (48%), Gaps = 23/304 (7%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD----RSVGLVLAHLKPDLAFNVL 58
           +L GG S E  +S  S +     ++ A F     D+     +SV       K  L F  +
Sbjct: 6   ILYGGDSVESGISQQSAEGIMENIDQAKFSARMQDIKNFDFKSVD------KETLIFIAV 59

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV----N 114
           HG  GEDG  Q +L+  +I +T S  +++    +K+ SK ++    +P  P   V     
Sbjct: 60  HGKDGEDGTTQKLLKKRKIKFTGSDEISTRKCWNKISSKTLMVENAIP-TPEFKVIKKNQ 118

Query: 115 RFTMDSQHL-ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
           +  ++ Q    +  + +KP   GSS G+  +   +++   ++ +  ++  + ++IE+  +
Sbjct: 119 KLNLEDQFFSKNKSFFVKPNSNGSSFGVSRVDHIKNLEGAIITARKYS--EDVIIERAYN 176

Query: 174 GIELTCGVMGDASLDVTEIAVPKSD-FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
             E T G++   +L   EI    S+ FY YE KY S  +  V    +   I  E++++A 
Sbjct: 177 SAEYTVGILKGEALQPLEIIAEDSEGFYDYEAKYISKGTKKVEV--VDKKIKDELKKIAL 234

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
            A    GC+   R DF++D   + +  LEIN  PG T  S+FP  A  +G +++EL+  +
Sbjct: 235 KAFYKHGCQTWGRVDFVYD--GKDLGVLEINTVPGFTEKSLFPLAAKLSGINYQELITNI 292

Query: 293 VEDA 296
           +ED+
Sbjct: 293 IEDS 296


>gi|212212282|ref|YP_002303218.1| D-alanyl-alanine synthetase A [Coxiella burnetii CbuG_Q212]
 gi|212010692|gb|ACJ18073.1| D-alanine--D-alanine ligase [Coxiella burnetii CbuG_Q212]
          Length = 373

 Score =  106 bits (265), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 100/348 (28%), Positives = 168/348 (48%), Gaps = 59/348 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVG---------LVLA---- 47
           ++VL GG S+E E+S+ S K   + L+ A + +S I +D  VG         + LA    
Sbjct: 8   ISVLCGGQSTEHEISIQSAKNIVNTLDAAKYLISVIFIDH-VGRWYLIDQPEMFLAYSPD 66

Query: 48  HL-----------------KP-------------DLAFNVLHGNFGEDGLVQAILELLEI 77
           HL                 KP             D  F ++HG  GEDG +Q +LELL +
Sbjct: 67  HLVKEGSARPITIAFGDAAKPWQSLNGDGRRYSADCVFPMVHGTQGEDGALQGLLELLNL 126

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCP-SILVNRFTMDS--QHLI----SPPYVI 130
           PY  + + +SA+ M+K  +K V+ + G+PV     L  R   +   Q L+    +    +
Sbjct: 127 PYVGANVQSSAVCMEKDLTKTVLRAGGIPVVDWHTLSPRDATEGVYQRLLDRWGTSELFV 186

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190
           K +  GSS+  + +K +      + +   + + D L++E  + G E+ C V+G+ +   +
Sbjct: 187 KAVSLGSSVATLPVKTETEFTKAVKE--VFRYDDHLMVEPRIRGREIECAVLGNGAPKAS 244

Query: 191 ---EIAVPKSDFYSYELKYSSLN-STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRS 246
              EI +P  D+YSY+ KY   N +T      +   + K++Q++A  A + + C G++R 
Sbjct: 245 LPGEI-IPHHDYYSYDAKYLDPNGATTTTSVDLSGSVTKQIQQIAIDAFKMVHCSGMARV 303

Query: 247 DFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           DF   P + KV   EIN  PG T +S++P+M   +G     LL  ++E
Sbjct: 304 DFFVTP-NNKVLVNEINTIPGFTNISMYPKMWEASGLPCPNLLDQLIE 350


>gi|153214583|ref|ZP_01949470.1| D-alanine--D-alanine ligase [Vibrio cholerae 1587]
 gi|153828727|ref|ZP_01981394.1| D-alanine--D-alanine ligase [Vibrio cholerae 623-39]
 gi|124115281|gb|EAY34101.1| D-alanine--D-alanine ligase [Vibrio cholerae 1587]
 gi|148875774|gb|EDL73909.1| D-alanine--D-alanine ligase [Vibrio cholerae 623-39]
          Length = 334

 Score =  106 bits (265), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 99/326 (30%), Positives = 153/326 (46%), Gaps = 36/326 (11%)

Query: 3   VLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDVDR----SVGLVLAHLKP------ 51
           +L GG SSE E+SL S       LE    F V ++++ +    S    L +L        
Sbjct: 8   LLCGGGSSEHEISLVSANYIQQQLELTPEFHVIRVEMKKEGWFSEQGALVYLDTNSATLN 67

Query: 52  --------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103
                   D     +HG  GE G +Q++LEL  IPY   G  ASA S +K+ SK    + 
Sbjct: 68  SDNTSYPIDFVVPCIHGFPGETGDIQSMLELAGIPYLGCGPEASANSFNKITSKLWYDAL 127

Query: 104 GVPVCPSILVNRFTMDSQHLISPPY------VIKPLKGGSSLGII-VIKKDQSIPLDLLQ 156
           G+P  P + + + T  S       +       +K  + GSS+G   V  +DQ  P     
Sbjct: 128 GIPNTPYLFLTQNTPSSIEKAKQAFGHWGSIFVKAARQGSSVGCYKVTTEDQIAPAI--- 184

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYS-SLNS 211
            +++   +Q+L+EQ V   EL       +  L ++   E+  P+  FYSYE KYS + ++
Sbjct: 185 EAAFGFSEQVLVEQAVKPRELEVSAYEMNGKLYISKPGEVIAPEGTFYSYEEKYSANSHA 244

Query: 212 THVLPAKIPLDIYKE-VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270
             VL A+   + +KE +Q  A      +  R +SR DF F     +++  E+N  PGMTP
Sbjct: 245 RTVLEAENLTEKHKELIQTYAERVFIHMKLRHLSRIDF-FLTQEGQIYLNEVNTFPGMTP 303

Query: 271 VSIFPEMAAYAGYSFRELLLWMVEDA 296
           +S+FP+M  + G+ F E L   V + 
Sbjct: 304 ISMFPKMLEHNGHRFSEFLAQCVTNT 329


>gi|313898581|ref|ZP_07832116.1| D-ala D-ala ligase N-terminal domain protein [Clostridium sp. HGF2]
 gi|312956465|gb|EFR38098.1| D-ala D-ala ligase N-terminal domain protein [Clostridium sp. HGF2]
          Length = 384

 Score =  106 bits (265), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 75/234 (32%), Positives = 119/234 (50%), Gaps = 21/234 (8%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           DL F VLHG  GEDG  Q  L+ + IPY    +LA A+  DK+  KQV+   G+ V P  
Sbjct: 99  DLVFPVLHGTNGEDGTFQGYLKTIGIPYVGCSVLAGAIGQDKVIMKQVLQDSGLSVVPWF 158

Query: 112 -------LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164
                  +   F   +Q L   P +IKP   GSS+GI V   D  +   ++++  ++H  
Sbjct: 159 FWTLHQPMEQSFFKKAQRL-GYPLIIKPANLGSSVGIAVAHNDVELHKSMIEAFQYDH-- 215

Query: 165 QLLIEQYVDGI-ELTCGVMGDAS---LDVTEIAVPKSDFYSYELKYSS-------LNSTH 213
           +++IE+ ++ + E+   V+GD         E  V + +  SY+ KYS        L+++ 
Sbjct: 216 KVVIEKVIEPLREINASVLGDEDGCRCSTLEEVVKQDEILSYDNKYSGQGKSKGMLSTSR 275

Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPG 267
            LPA++  +  +EV+ +A  A +A+   G+ R DFL    S  ++  EIN  PG
Sbjct: 276 KLPAELSDEQAEEVRTMAMDAFRALNAAGVVRIDFLMHADSSALYVNEINTIPG 329


>gi|254432107|ref|ZP_05045810.1| D-alanine--D-alanine ligase [Cyanobium sp. PCC 7001]
 gi|197626560|gb|EDY39119.1| D-alanine--D-alanine ligase [Cyanobium sp. PCC 7001]
          Length = 365

 Score =  106 bits (264), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 72/252 (28%), Positives = 121/252 (48%), Gaps = 21/252 (8%)

Query: 43  GLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS 102
           G     L  ++ F VLHG  GEDG +Q +  L+++P+  SG+L SA+ MDK   K  +++
Sbjct: 80  GFPTGALAMEVWFPVLHGPNGEDGTIQGLFTLMQVPFVGSGVLGSAVGMDKQAMKAALAA 139

Query: 103 CGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153
             +P  P   V    +++         +  +  P  +KP   GSS+GI        +   
Sbjct: 140 AELPQVPYACVEAGELEADPAAVLERLERQLGYPCFVKPANLGSSVGISKATDRDGLLAG 199

Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK----SDFYSYELKYSSL 209
           L  +++ +   +L++EQ V   EL C V G     +    + +    +D+Y Y  KYS  
Sbjct: 200 LRSAAALD--PRLVVEQGVTARELECAVRGGGPRPLEASVLGEIRYDADWYDYATKYSEG 257

Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF------DPLSRKVFWLEIN 263
            S  V+PA +P  I  + + +A  A +A+   G++R DF +      D    +++  EIN
Sbjct: 258 RSHTVIPADVPEGIAAQARGMALEACRALNASGLARVDFFYTAPAPGDGGEGRLWLNEIN 317

Query: 264 VQPGMTPVSIFP 275
             PG T  S++P
Sbjct: 318 TLPGFTSQSMYP 329


>gi|146339809|ref|YP_001204857.1| D-alanyl-alanine synthetase A [Bradyrhizobium sp. ORS278]
 gi|190359116|sp|A4YRU4|DDL_BRASO RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|146192615|emb|CAL76620.1| D-alanine--D-alanine ligase A (D-alanylalanine synthetase A)
           (D-Ala-D-Ala ligase A) [Bradyrhizobium sp. ORS278]
          Length = 367

 Score =  105 bits (263), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 71/244 (29%), Positives = 126/244 (51%), Gaps = 17/244 (6%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+ F VLHG  GEDG VQ  LEL ++ Y    +L SA +MDK  +K+++   G+P+ P +
Sbjct: 100 DVIFPVLHGPNGEDGTVQGALELADVAYVGGRVLGSAAAMDKDVAKRLLRDAGLPIVPFV 159

Query: 112 LVN-----RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQL 166
            +       +   ++ + S    +KP   GSS+GI   K   +   +     +     ++
Sbjct: 160 TMTAASPVSYDDAARAVGSSELFVKPANLGSSVGI--SKTRDAAEFEAACQLALRFDRKI 217

Query: 167 LIEQYVDGI-ELTCGVM--GDASLDVTEIA--VPKSD--FYSYELKYSSLNSTHV-LPAK 218
           LIE+ +  + E+ C V+   D  +  +E+   VP +   FYSYE KY+  N   + +PA+
Sbjct: 218 LIERCIAPVREIECAVLEHADGQIKASELGEIVPANSHGFYSYEAKYTDANGAALHVPAQ 277

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278
           +   + + ++++A     A+ C  ++R DF       +++  E+N  PG T +S++P+M 
Sbjct: 278 VEPAVAQRIRKMATEVFGALCCESLARVDFFVR--GDEIYVNEVNTLPGFTNISMYPKMW 335

Query: 279 AYAG 282
             AG
Sbjct: 336 EAAG 339


>gi|291557013|emb|CBL34130.1| D-alanine--D-alanine ligase [Eubacterium siraeum V10Sc8a]
          Length = 397

 Score =  105 bits (263), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 78/265 (29%), Positives = 129/265 (48%), Gaps = 29/265 (10%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+AF ++HG   EDG+ Q  L+ + +PY    +++SA+ MDK   K V    G+PV    
Sbjct: 101 DVAFPIVHGTNVEDGVFQGYLQTIGVPYVGCDVISSAVGMDKYVMKTVFKDNGIPVLDGT 160

Query: 112 LV---------NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
           ++         +    D +  I+ P ++KP+  GSS+GI++   D+   LD    +++ +
Sbjct: 161 VIHISDYAKDADAVKADIKAKIAYPLIVKPINLGSSVGIMIAHNDEQ--LDEALDNAFTY 218

Query: 163 GDQLLIEQYVDGI-ELTCGVMGD-ASLDVTEIAVP--KSDFYSYELKY------SSLNST 212
             +LL+E  +  + E+ C V GD A+   +E   P    +  SY+ KY         +  
Sbjct: 219 ASKLLVEPAITNLKEINCSVCGDYATAHASECEEPVNTDEILSYKDKYIAGDKGGKSSGM 278

Query: 213 HVLPAKIPLDIYKE----VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268
             L  KIP DI  E    ++ LA  A +++G  G SR DF+ D  +  V+  EIN  PG 
Sbjct: 279 ATLKRKIPADISDETREQIRTLAVKAFKSLGASGTSRIDFMIDMDNGNVYLNEINTIPGS 338

Query: 269 TPVSIFPEMAAYAGYSFRELLLWMV 293
               ++  +    G  + ELL  M+
Sbjct: 339 LAFYLWEPV----GVKYSELLDEMI 359


>gi|270159086|ref|ZP_06187742.1| D-alanine--D-alanine ligase A [Legionella longbeachae D-4968]
 gi|289166078|ref|YP_003456216.1| D-alanine--D-alanine ligase A [Legionella longbeachae NSW150]
 gi|269987425|gb|EEZ93680.1| D-alanine--D-alanine ligase A [Legionella longbeachae D-4968]
 gi|288859251|emb|CBJ13185.1| D-alanine--D-alanine ligase A [Legionella longbeachae NSW150]
          Length = 364

 Score =  105 bits (263), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 87/342 (25%), Positives = 159/342 (46%), Gaps = 59/342 (17%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           + +L GG S E E+SL S  +  + L+D  + +  I +D+  GL+  H            
Sbjct: 7   LVLLYGGKSGEHEISLISAASVLAHLDDKKYNIIPIAMDKD-GLLHQHQYQDLLASKEKL 65

Query: 50  -------KP--------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
                  KP              D+ F ++HG   EDG +Q +LEL  + Y    +L+SA
Sbjct: 66  PVVTEKSKPLAGLLINGRLSVDADIVFPIVHGPLYEDGCLQGMLELSGVAYVGCDVLSSA 125

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVN---------RFTMDSQHLISPPYVIKPLKGGSSL 139
           + MDK  ++++    G+      +++         RF  +       P  +KP   GSS+
Sbjct: 126 IGMDKDMTRRIACINGLKSADYKVLSWHTSTSERQRFCQEVAAEFGWPLFVKPCAMGSSV 185

Query: 140 GIIVIKKDQSIPLDLLQSS---SWNHGDQLLIEQYVDGIELTCGVM------GDASLDVT 190
           GI   K      +D L ++   +  + +++L+E +V G E+   V+      G   +   
Sbjct: 186 GIHKAKN-----MDELINAVEDALRYDEEILVEAFVTGREIELSVLESVIPAGKPRVSFA 240

Query: 191 -EIAVPKSD-FYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
            EI V   D FYSY  KY     T  ++PA +   +Y+++++ A      + C+G++R D
Sbjct: 241 GEIRVNHPDGFYSYSAKYLESGKTDLIIPAHLSHTLYEQLKQAAADIFLRLKCKGMARVD 300

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           F  +  +  +++ E+N  PG T +S++P++   +G ++ +LL
Sbjct: 301 FFVNEKTETIYFNEVNTLPGFTSISMYPKLWQASGLAYPDLL 342


>gi|297171184|gb|ADI22193.1| D-alanine-D-alanine ligase and related ATP-grasp enzymes
           [uncultured gamma proteobacterium HF0200_34B07]
          Length = 371

 Score =  105 bits (263), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 73/256 (28%), Positives = 125/256 (48%), Gaps = 16/256 (6%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           ++ F +LHG +GEDG +Q +LEL  + Y  +G+ ASA+ MDK+ ++ + ++ G+P     
Sbjct: 96  EVVFPLLHGPYGEDGTIQGLLELAGLAYVGAGVSASAVGMDKVLARAIFAASGLPQTQYS 155

Query: 112 LVNRF-----------TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160
           ++ R             ++ +H    P  +KP   GSS+GI  +   Q +   L  +S +
Sbjct: 156 VIMRSEWRREQAPVLERLEEEH--DYPLFVKPANLGSSVGISKVHDRQGLHAALELASRF 213

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA--VPKSDFYSYELKYSSLNSTHVLPAK 218
           +       ++      L     G      + +   +P  +FY Y  KY    S  V+PA 
Sbjct: 214 DTKXXYSKDRSKTLENLNVPFWGTTIHKXSGVGEIIPGGEFYDYTTKYIDERSQLVIPAV 273

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278
           +     + VQ LA  A +AI C G++R D  F      V   EIN  PG TP+S++P++ 
Sbjct: 274 LEKSESEAVQELAIRAFKAIDCSGLARVD-CFMCSDGSVLVNEINTMPGFTPISMYPKLW 332

Query: 279 AYAGYSFRELLLWMVE 294
           A AG  + +L+  +++
Sbjct: 333 AAAGIDYGDLIDRLIQ 348


>gi|282882300|ref|ZP_06290931.1| D-alanine--D-alanine ligase [Peptoniphilus lacrimalis 315-B]
 gi|300813906|ref|ZP_07094210.1| D-ala D-ala ligase N-terminal domain protein [Peptoniphilus sp.
           oral taxon 836 str. F0141]
 gi|281297850|gb|EFA90315.1| D-alanine--D-alanine ligase [Peptoniphilus lacrimalis 315-B]
 gi|300511969|gb|EFK39165.1| D-ala D-ala ligase N-terminal domain protein [Peptoniphilus sp.
           oral taxon 836 str. F0141]
          Length = 390

 Score =  105 bits (263), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 79/269 (29%), Positives = 128/269 (47%), Gaps = 28/269 (10%)

Query: 48  HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV 107
           + + D  F  LHG FGEDG +Q + E + IPY   G+LA A  MDK+  K +  +  +PV
Sbjct: 101 YARIDAIFPALHGTFGEDGAIQGLFEYMNIPYVGCGVLAGACGMDKVIMKDIFKANNIPV 160

Query: 108 CPSILVNRFTM-DSQHLISP------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160
                  R  + D Q ++        P ++KP   GSS+GI  +K   ++ L      + 
Sbjct: 161 VDYTYFYRSELKDLQSVLKKCEKLGYPLIVKPANLGSSIGISKVK--DTLELTKALEVAS 218

Query: 161 NHGDQLLIEQ-YVDGIELTCGVMGDA---SLDVTEIAVPKSDFYSYELKY---------S 207
           N+  ++++E+   D  E+   V+GD     +   E  +   D  +Y  KY         S
Sbjct: 219 NYDKKIIVEKCLTDHREINVAVLGDQDDLKVSACEEPITAEDILTYGDKYVGSSKTKMAS 278

Query: 208 SLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPG 267
             N    LPA +  +++ ++ +LA  + +AI   G+SR DFL    + +V+  EIN  PG
Sbjct: 279 QENQKKKLPADLSKEVHNKICQLAKESFKAIDATGVSRIDFLLK--NDEVYVNEINTLPG 336

Query: 268 MTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                +F       G SF++LL  ++E A
Sbjct: 337 SIAFYLFE----VEGLSFKDLLTKLLEIA 361


>gi|167750589|ref|ZP_02422716.1| hypothetical protein EUBSIR_01565 [Eubacterium siraeum DSM 15702]
 gi|167656515|gb|EDS00645.1| hypothetical protein EUBSIR_01565 [Eubacterium siraeum DSM 15702]
          Length = 397

 Score =  105 bits (263), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 78/265 (29%), Positives = 129/265 (48%), Gaps = 29/265 (10%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+AF ++HG   EDG+ Q  L+ + +PY    +++SA+ MDK   K V    G+PV    
Sbjct: 101 DVAFPIVHGTNVEDGVFQGYLQTIGVPYVGCDVISSAVGMDKYVMKTVFKDNGIPVLDGT 160

Query: 112 LV---------NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
           ++         +    D +  I+ P ++KP+  GSS+GI++   D+   LD    +++ +
Sbjct: 161 VIHISDYAKDADAVKADIKAKIAYPLIVKPINLGSSVGIMIAHNDEQ--LDEALDNAFTY 218

Query: 163 GDQLLIEQYVDGI-ELTCGVMGD-ASLDVTEIAVP--KSDFYSYELKY------SSLNST 212
             +LL+E  +  + E+ C V GD A+   +E   P    +  SY+ KY         +  
Sbjct: 219 ASKLLVEPAITNLKEINCSVCGDYATAHASECEEPVNTDEILSYKDKYIAGDKGGKSSGM 278

Query: 213 HVLPAKIPLDIYKE----VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268
             L  KIP DI  E    ++ LA  A +++G  G SR DF+ D  +  V+  EIN  PG 
Sbjct: 279 ATLKRKIPADISDETREQIRTLAVKAFRSLGASGTSRIDFMIDMDNGNVYLNEINTIPGS 338

Query: 269 TPVSIFPEMAAYAGYSFRELLLWMV 293
               ++  +    G  + ELL  M+
Sbjct: 339 LAFYLWEPV----GVKYSELLDEMI 359


>gi|161830077|ref|YP_001597183.1| D-alanyl-alanine synthetase A [Coxiella burnetii RSA 331]
 gi|189083040|sp|A9N8L3|DDL_COXBR RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|161761944|gb|ABX77586.1| D-alanine--D-alanine ligase [Coxiella burnetii RSA 331]
          Length = 372

 Score =  105 bits (263), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 98/347 (28%), Positives = 166/347 (47%), Gaps = 57/347 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI---DVDR-----SVGLVLAH---- 48
           ++VL GG S+E E+S+ S K   + L+ A + +S I    V R        + LAH    
Sbjct: 7   ISVLCGGQSTEHEISIQSAKNIVNTLDAAKYLISVIFIVHVGRWYLIDQPEMFLAHSPDH 66

Query: 49  -----------------LKP-------------DLAFNVLHGNFGEDGLVQAILELLEIP 78
                             KP             D  F ++HG  GEDG +Q +LELL +P
Sbjct: 67  LVKEGSARPITIAFGDAAKPWQSLNGDGRRYSADCVFPMVHGTQGEDGALQGLLELLNLP 126

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCP-SILVNRFTMDS--QHLI----SPPYVIK 131
           Y  + + +SA+ M+K  +K V+ + G+PV     L  R   +   Q L+    +    +K
Sbjct: 127 YVGANVQSSAVCMEKDLTKTVLRAGGIPVVDWHTLSPRDATEGVYQRLLDRWGTSELFVK 186

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT- 190
            +  GSS+  + +K +      + +   + + D+L++E  + G E+ C V+G+ +   + 
Sbjct: 187 AVSLGSSVATLPVKTETEFTKAVKE--VFRYDDRLMVEPRIRGREIECAVLGNGAPKASL 244

Query: 191 --EIAVPKSDFYSYELKYSSLN-STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
             EI +P  D+YSY+ KY   N +T      +   + K++Q++A  A + + C G++R D
Sbjct: 245 PGEI-IPHHDYYSYDAKYLDPNGATTTTSVDLSESVTKQIQQIAIDAFKMVHCSGMARVD 303

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           F   P + KV   EIN  PG T +S++P+M   +G     LL  ++E
Sbjct: 304 FFVTP-NNKVLVNEINTIPGFTNISMYPKMWEASGLPCPNLLDQLIE 349


>gi|229523064|ref|ZP_04412476.1| D-alanine--D-alanine ligase [Vibrio cholerae TM 11079-80]
 gi|229339914|gb|EEO04924.1| D-alanine--D-alanine ligase [Vibrio cholerae TM 11079-80]
          Length = 334

 Score =  105 bits (263), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 99/326 (30%), Positives = 152/326 (46%), Gaps = 36/326 (11%)

Query: 3   VLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDVDR----SVGLVLAHLKP------ 51
           +L GG SSE E+SL S       LE    F V ++++ +    S    L +L        
Sbjct: 8   LLCGGGSSEHEISLVSANYIQQQLELTPEFHVIRVEMKKEGWFSEQGALVYLDTNSATLN 67

Query: 52  --------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103
                   D     +HG  GE G +Q++LEL  IPY   G  ASA S +K+ SK    + 
Sbjct: 68  SDNTSYPIDFVVPCIHGFPGETGDIQSMLELAGIPYLGCGPEASANSFNKITSKLWYDAL 127

Query: 104 GVPVCPSILVNRFTMDSQHLISPPY------VIKPLKGGSSLGII-VIKKDQSIPLDLLQ 156
           G+P  P + + + T  S       +       +K  + GSS+G   V  +DQ  P     
Sbjct: 128 GIPNTPYLFLTQNTPSSIEKAKQAFGHWGSIFVKAARQGSSVGCYKVTTEDQIAPAI--- 184

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYS-SLNS 211
            +++   +Q+L+EQ V   EL       +  L ++   E+  P+  FYSYE KYS + ++
Sbjct: 185 EAAFGFSEQVLVEQAVKPRELEVSAYEMNGKLYISKPGEVIAPEGTFYSYEEKYSANSHA 244

Query: 212 THVLPAKIPLDIYKE-VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270
             VL A+   +  KE +Q  A      +  R +SR DF F     +++  E+N  PGMTP
Sbjct: 245 RTVLEAENLTEKQKELIQTYAERVFIHMNLRHLSRIDF-FLTQEGQIYLNEVNTFPGMTP 303

Query: 271 VSIFPEMAAYAGYSFRELLLWMVEDA 296
           +S+FP+M  + G+ F E L   V + 
Sbjct: 304 ISMFPKMLEHNGHRFSEFLAQCVTNT 329


>gi|270307989|ref|YP_003330047.1| D-alanine--D-alanine ligase [Dehalococcoides sp. VS]
 gi|270153881|gb|ACZ61719.1| D-alanine--D-alanine ligase [Dehalococcoides sp. VS]
          Length = 338

 Score =  105 bits (263), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 91/298 (30%), Positives = 150/298 (50%), Gaps = 27/298 (9%)

Query: 20  KACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG--NF-GEDGLVQAILELLE 76
           +A  +AL+ AG  V ++   +     +   K DL FN+  G  N+   +  + +ILE+L+
Sbjct: 34  EAITTALKAAGHTVYRLGGGKEFLRRVQEQKLDLVFNISEGLGNYRSREAQIPSILEMLD 93

Query: 77  IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF----TMDSQHLISPPYVIKP 132
           IPYT S     A+ +DK  +K++V+S G+      LVN       +D      P + +KP
Sbjct: 94  IPYTGSDPQTLAICLDKPLTKKLVASAGIKTARWQLVNNCEELSAIDWSGFPLPAF-LKP 152

Query: 133 LKGGSSLGIIVIKKDQSI------PLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186
              GSS G+    + +SI        DLL +    +   +LIE++++G E+T GV+G+ S
Sbjct: 153 ACEGSSKGVRFASRAESIDEIMSMAADLLTT----YEQPVLIEEFINGEEITVGVIGNTS 208

Query: 187 LDVTEI--AVP--KSDFYSYELKYSSLNSTHV---LPAKIPLDIYKEVQRLAFLAHQAIG 239
            +V  I   VP  K+D++ Y ++        V   +PA +P +    +++    A++ + 
Sbjct: 209 PEVLGIMRVVPKTKTDYFVYSIEVKRNWRQMVEYEVPAALPGETLARIEKATLDAYKVLE 268

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-IFPEMAAYAGYSFRELLLWMVEDA 296
           CR + R DF   P     F LE+N  PG+ PVS   P MA+  G S  EL+L ++  A
Sbjct: 269 CRDLCRMDFRISPDGVPYF-LEVNPLPGLNPVSGDLPIMASKLGISHAELVLKILNTA 325


>gi|309774770|ref|ZP_07669792.1| D-alanine--D-alanine ligase [Erysipelotrichaceae bacterium 3_1_53]
 gi|308917455|gb|EFP63173.1| D-alanine--D-alanine ligase [Erysipelotrichaceae bacterium 3_1_53]
          Length = 384

 Score =  105 bits (262), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 72/234 (30%), Positives = 119/234 (50%), Gaps = 21/234 (8%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           DL F VLHG  GEDG  Q  L+ L +PY    +LA A+  DK+  KQV+   G+ V P  
Sbjct: 99  DLVFPVLHGTNGEDGTFQGYLKTLGVPYVGCSVLAGAIGQDKVIMKQVLQDSGLRVVPWF 158

Query: 112 -------LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164
                  +   F   +Q L   P +IKP   GSS+GI V   D  +   ++++  ++H  
Sbjct: 159 FWTLHQPMEQSFFKKAQRL-GYPLIIKPANLGSSVGIAVAHNDVELHKSMIEAFQYDH-- 215

Query: 165 QLLIEQYVDGI-ELTCGVMGDA---SLDVTEIAVPKSDFYSYELKYSS-------LNSTH 213
           +++IE+ ++ + E+   V+GD         E  + + +  SY+ KY         ++++ 
Sbjct: 216 KVVIEKVIEPLREINASVLGDEDGCRCSTLEEVIKQDEILSYQDKYHGQGKSKGMVSTSR 275

Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPG 267
            LPA++  +  +EVQR+A    +++   G+ R DFL    S +++  EIN  PG
Sbjct: 276 KLPAELTEEQTEEVQRMAMDTFRSLNAAGVVRIDFLMQQDSGELYVNEINTIPG 329


>gi|160914186|ref|ZP_02076408.1| hypothetical protein EUBDOL_00195 [Eubacterium dolichum DSM 3991]
 gi|158433997|gb|EDP12286.1| hypothetical protein EUBDOL_00195 [Eubacterium dolichum DSM 3991]
          Length = 392

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 70/234 (29%), Positives = 114/234 (48%), Gaps = 21/234 (8%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+ F +LHG  GEDG  Q  L  L IPY    +L  A+  DK+  KQ++   G+PV P  
Sbjct: 111 DMVFPILHGTHGEDGTFQGYLSTLHIPYIGCSVLGGAIGQDKIIMKQILEDSGLPVAPWF 170

Query: 112 -------LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164
                  L + F   ++ L   P ++KP   GSS+G  V K +  + L      ++ +  
Sbjct: 171 YWTLLKPLDDTFFRKAERL-GYPLIVKPANLGSSIG--VAKVENEVELHRAMIEAYQYDG 227

Query: 165 QLLIEQYVDGI-ELTCGVMGDASL---DVTEIAVPKSDFYSYELKYSS-------LNSTH 213
           +++IE+ ++ + E+ C V+GD       V E  +   D  SY  KY         +N+  
Sbjct: 228 RVVIEKAIEHVQEINCAVLGDEQTCEASVLEEVLSSKDILSYADKYVCGEGVKGIVNTRR 287

Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPG 267
            +PA+I  ++  E+Q LA    + +   G  R DFL++  ++ ++  EIN  PG
Sbjct: 288 CIPARIDEELALEIQTLAKECFRCLCASGTGRIDFLYNRETKDLYINEINTIPG 341


>gi|330836876|ref|YP_004411517.1| D-alanine--D-alanine ligase [Spirochaeta coccoides DSM 17374]
 gi|329748779|gb|AEC02135.1| D-alanine--D-alanine ligase [Spirochaeta coccoides DSM 17374]
          Length = 388

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 103/367 (28%), Positives = 161/367 (43%), Gaps = 78/367 (21%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI-----------DVDRSVGLVLAH- 48
           +AVL GG S E +VS  S +     L  AG+ V  I           DV  SV ++    
Sbjct: 4   VAVLSGGRSPEHDVSRMSAENICKELVAAGYGVLPIVITRNGRWFLQDVHESVAVIRQEA 63

Query: 49  ------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
                             L  D+ F V HG  GEDG +QA+LEL  +PY  SG +AS + 
Sbjct: 64  ERGVSIHPGDGLWMNGEKLAVDIVFPVTHGTEGEDGRLQALLELAHLPYAGSGTVASMMG 123

Query: 91  MDKMRSKQVVSSCGVPVCPSILVN----------------------RFTMDS-------- 120
           M K  +K V    G+PV PSIL++                        + DS        
Sbjct: 124 MYKNLAKDVARILGIPVTPSILLSPDDIAWLGNDEDAPFPRLFTSFDISPDSTGTARADL 183

Query: 121 -----QHLISPPYVIKPLKGGSSLGIIVIKKDQS-IPLDLLQSSSWNHGDQLLIEQYV-D 173
                Q  +    ++KP   GSS+G+  + +  + I LD +   ++  G+++L+E ++ D
Sbjct: 184 FLGVLQEKLGKSLLVKPEASGSSVGVTALPQPGAEIFLDAV-FMAYIPGERVLVETFIPD 242

Query: 174 GIELTCGVMGDASLDVTE----IAVPKSD--FYSYELKYS-SLNSTHVLPAKIPLDIYKE 226
            +EL C ++      VT     +  P  +    SY++KYS   ++T   P  I  +  + 
Sbjct: 243 VMELECALLEAEDEIVTAGPGLVRKPAGEESILSYDIKYSVHRHATMEYPPPIAREEAEM 302

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSR---KVFWLEINVQPGMTPVSIFPEMAAYAGY 283
           +   A     A+GC G +R DF  DP  +   ++F+ EIN  PG+T  S +P +    G 
Sbjct: 303 IATYARSLFSALGCTGYARVDFFIDPSGKPDARIFFNEINTLPGLTDTSHWPFLMKCKGL 362

Query: 284 SFRELLL 290
            + ++LL
Sbjct: 363 EWPQMLL 369


>gi|88800417|ref|ZP_01115982.1| D-alanylalanine synthetase [Reinekea sp. MED297]
 gi|88776864|gb|EAR08074.1| D-alanylalanine synthetase [Reinekea sp. MED297]
          Length = 359

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 72/259 (27%), Positives = 137/259 (52%), Gaps = 24/259 (9%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC--- 108
           D+ F VLHG +GEDG +Q +  L  +P   SGIL SA+ MDK  +K+++   G+ V    
Sbjct: 101 DVLFPVLHGPYGEDGSIQGLARLANLPCVGSGILGSAVGMDKDIAKRLLIHAGLNVADYE 160

Query: 109 -------PSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN 161
                     L+ R     Q+    P  +KP   GSS+G+   +  +++   +  ++ ++
Sbjct: 161 VVRNGQLTEALIERIETRLQY----PVFVKPANMGSSIGVSKAENREALITAVADAARFD 216

Query: 162 HGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSD-FYSYELKYSSLNSTHV-LP 216
              ++L+E  V G E+ C V+G+ + + +   EIA  ++  FY Y+ KY   +   + +P
Sbjct: 217 P--KILVEALVVGREIECAVLGNDTPEASVCGEIAANQTHAFYDYDAKYIDADGAVLSIP 274

Query: 217 AKIPLDIYKEVQRLAFLAHQAIGCRGISRSD-FLFDPLSRKVFWLEINVQPGMTPVSIFP 275
           A I  +  + ++ ++      + CRG++R D FL D  + +V   E+N  PG T +S++P
Sbjct: 275 AAISDEASERIREISKQVFTTLECRGLTRVDVFLTD--AGEVVINEVNTIPGFTKISMYP 332

Query: 276 EMAAYAGYSFRELLLWMVE 294
           ++  ++G  + +L+  +++
Sbjct: 333 KLWEHSGLPYPKLIDRLIQ 351


>gi|227431259|ref|ZP_03913313.1| D-alanine--D-alanine ligase [Leuconostoc mesenteroides subsp.
           cremoris ATCC 19254]
 gi|227353021|gb|EEJ43193.1| D-alanine--D-alanine ligase [Leuconostoc mesenteroides subsp.
           cremoris ATCC 19254]
          Length = 386

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 99/335 (29%), Positives = 162/335 (48%), Gaps = 58/335 (17%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAG------FKVSQ------------------- 35
           +A++ GG SSE +VS  S +   +A+E  G      F ++Q                   
Sbjct: 15  VALIFGGNSSEHDVSKRSAQNFYNAIEATGKYEIIVFAIAQNGFFLDTESSKKILALEDE 74

Query: 36  ---ID-----VDRSVGLVLAH-LKP----DLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
              +D     VD S  L   H LK     D+ F V+HGN GEDG +Q + +LL+ PY  +
Sbjct: 75  QPIVDAFMKTVDTSDPLARIHALKSAGDFDIFFPVVHGNLGEDGTLQGLFKLLDKPYVGA 134

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILV-----NRFTMDS-QHLISPPYVIKPLKGG 136
            +   A+S DK  +K++++  G+     I+V     N ++ D     +     +K    G
Sbjct: 135 PLRGHAVSFDKALTKELLTVNGIRNTKYIVVDPESANNWSWDKIVAELGNIVFVKAANQG 194

Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI-ELTCGVMGDASLDVTEIA-- 193
           SS+GI  +   +     L  S S+ +  ++LIE+ V+G  EL  GV+G+    V+EI   
Sbjct: 195 SSVGISRVTNAEEYTEAL--SDSFQYDYKVLIEEAVNGARELEVGVIGNDQPLVSEIGAH 252

Query: 194 -VPK----SDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
            VP       +Y Y  K+   ++ H  +PA++  ++ KEV+++A  A++ +  RG +R D
Sbjct: 253 TVPNQGSGDGWYDYNNKFVDNSAVHFEIPAQLSPEVTKEVKQMALDAYKVLNLRGEARMD 312

Query: 248 FLFDPLSRKVFWL-EINVQPGMTPVSIFPEMAAYA 281
           FL D     V +L E N  PG T +S+F  +  Y+
Sbjct: 313 FLLD--ENNVPYLGEPNTLPGFTNMSLFKRLWDYS 345


>gi|116617393|ref|YP_817764.1| D-alanine--D-alanine ligase [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
 gi|122272406|sp|Q03ZI1|DDL_LEUMM RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|1658487|gb|AAB18338.1| D-Ala-D-Ala ligase2 [Leuconostoc mesenteroides]
 gi|116096240|gb|ABJ61391.1| D-alanine--D-alanine ligase [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
          Length = 377

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 96/335 (28%), Positives = 161/335 (48%), Gaps = 58/335 (17%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAG------FKVSQ----IDVDRSVG-LVLAHL 49
           +A++ GG SSE +VS  S +   +A+E  G      F ++Q    +D + S   L L   
Sbjct: 6   VALIFGGNSSEHDVSKRSAQNFYNAIEATGKYEIIVFAIAQNGFFLDTESSKKILALEDE 65

Query: 50  KP---------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
           +P                           D+ F V+HGN GEDG +Q + +LL+ PY  +
Sbjct: 66  QPIVDAFMKTVDASDPLARIHALKSAGDFDIFFPVVHGNLGEDGTLQGLFKLLDKPYVGA 125

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILV-----NRFTMDS-QHLISPPYVIKPLKGG 136
            +   A+S DK  +K++++  G+     I+V     N ++ D     +     +K    G
Sbjct: 126 PLRGHAVSFDKALTKELLTVNGIRNTKYIVVDPESANNWSWDKIVAELGNIVFVKAANQG 185

Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI-ELTCGVMGDASLDVTEIA-- 193
           SS+GI  +   +     L  S S+ +  ++LIE+ V+G  EL  GV+G+    V+EI   
Sbjct: 186 SSVGISRVTNAEEYTEAL--SDSFQYDYKVLIEEAVNGARELEVGVIGNDQPLVSEIGAH 243

Query: 194 -VPKS----DFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
            VP       +Y Y  K+   ++ H  +PA++  ++ KEV+++A  A++ +  RG +R D
Sbjct: 244 TVPNQGSGDGWYDYNNKFVDNSAVHFEIPAQLSPEVTKEVKQMALDAYKVLNLRGEARMD 303

Query: 248 FLFDPLSRKVFWL-EINVQPGMTPVSIFPEMAAYA 281
           FL D     V +L E N  PG T +S+F  +  Y+
Sbjct: 304 FLLD--ENNVPYLGEPNTLPGFTNMSLFKRLWDYS 336


>gi|320528246|ref|ZP_08029409.1| D-ala D-ala ligase [Solobacterium moorei F0204]
 gi|320131371|gb|EFW23938.1| D-ala D-ala ligase [Solobacterium moorei F0204]
          Length = 401

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 93/366 (25%), Positives = 157/366 (42%), Gaps = 78/366 (21%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV-------------LA 47
           +AV  GG S E EVS+ S      AL+   + V  + V +   L              L 
Sbjct: 5   IAVFFGGESVEHEVSIISAHQAIEALDKNKYNVIPVYVSKERKLYVSDLLKDISNYKDLK 64

Query: 48  HL---------------------KP-----------DLAFNVLHGNFGEDGLVQAILELL 75
           HL                     KP           D+A  V+HG  GEDG +Q   E+L
Sbjct: 65  HLISQCTQVSITSEDNRVVIRPVKPSLFGPKELGTIDVAIPVMHGTNGEDGTIQGFFEML 124

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ--------HLISPP 127
           ++PY    +  +A+  DK+  K V++   +P+     V    MD+         H +  P
Sbjct: 125 KVPYAGCDLYGAAIGQDKVLQKNVLNDNNLPITNWFWVYGSEMDTHQSEILDKVHRLIYP 184

Query: 128 YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI-ELTCGVMGDAS 186
            +IKP + GSS+GI +   D+       ++  ++  ++++ E+ V  + E+ C V+GD+ 
Sbjct: 185 VIIKPARTGSSVGISIAHNDEEYLACFDEARQYD--EKIITEKVVKPMREINCSVVGDSY 242

Query: 187 LDVTEI-----AVPKSDFYSYELKY-------------SSLNSTHVLPAKIPLDIYKEVQ 228
             V  +     +V + +  S+  KY                ++  ++PA +  +  + +Q
Sbjct: 243 SCVASVLEEVSSVSQDELLSFSDKYLGGSKSAKSEGSKGMASTARIVPAPLTDEQTRLIQ 302

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           +LA    + +G  G+ R DFL D  ++KV+  EIN  PG     ++      AG SF EL
Sbjct: 303 QLAKETFRVLGTSGVCRIDFLMDADTKKVYVNEINTIPGSLAFYLWKA----AGVSFSEL 358

Query: 289 LLWMVE 294
           +  +VE
Sbjct: 359 MDKLVE 364


>gi|8569477|pdb|1EHI|A Chain A, D-Alanine:d-Lactate Ligase (Lmddl2) Of
           Vancomycin-Resistant Leuconostoc Mesenteroides
 gi|8569478|pdb|1EHI|B Chain B, D-Alanine:d-Lactate Ligase (Lmddl2) Of
           Vancomycin-Resistant Leuconostoc Mesenteroides
          Length = 377

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 96/335 (28%), Positives = 161/335 (48%), Gaps = 58/335 (17%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAG------FKVSQ----IDVDRSVG-LVLAHL 49
           +A++ GG SSE +VS  S +   +A+E  G      F ++Q    +D + S   L L   
Sbjct: 6   VALIFGGNSSEHDVSKRSAQNFYNAIEATGKYEIIVFAIAQNGFFLDTESSKKILALEDE 65

Query: 50  KP---------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
           +P                           D+ F V+HGN GEDG +Q + +LL+ PY  +
Sbjct: 66  QPIVDAFMKTVDASDPLARIHALKSAGDFDIFFPVVHGNLGEDGTLQGLFKLLDKPYVGA 125

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILV-----NRFTMDS-QHLISPPYVIKPLKGG 136
            +   A+S DK  +K++++  G+     I+V     N ++ D     +     +K    G
Sbjct: 126 PLRGHAVSFDKALTKELLTVNGIRNTKYIVVDPESANNWSWDKIVAELGNIVFVKAANQG 185

Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI-ELTCGVMGDASLDVTEIA-- 193
           SS+GI  +   +     L  S S+ +  ++LIE+ V+G  EL  GV+G+    V+EI   
Sbjct: 186 SSVGISRVTNAEEYTEAL--SDSFQYDYKVLIEEAVNGARELEVGVIGNDQPLVSEIGAH 243

Query: 194 -VPKS----DFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
            VP       +Y Y  K+   ++ H  +PA++  ++ KEV+++A  A++ +  RG +R D
Sbjct: 244 TVPNQGSGDGWYDYNNKFVDNSAVHFQIPAQLSPEVTKEVKQMALDAYKVLNLRGEARMD 303

Query: 248 FLFDPLSRKVFWL-EINVQPGMTPVSIFPEMAAYA 281
           FL D     V +L E N  PG T +S+F  +  Y+
Sbjct: 304 FLLD--ENNVPYLGEPNTLPGFTNMSLFKRLWDYS 336


>gi|254226469|ref|ZP_04920055.1| D-alanine--D-alanine ligase [Vibrio cholerae V51]
 gi|125621031|gb|EAZ49379.1| D-alanine--D-alanine ligase [Vibrio cholerae V51]
          Length = 334

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 98/326 (30%), Positives = 152/326 (46%), Gaps = 36/326 (11%)

Query: 3   VLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDVDRSVGL----VLAHLKP------ 51
           +L GG SSE E+SL S       LE    F V ++++ +   L     L +L        
Sbjct: 8   LLCGGGSSEHEISLVSANYIQQQLELTPEFHVIRVEMKKEGWLSEQGALVYLDTNSATLN 67

Query: 52  --------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103
                   D     +HG  GE G +Q++LEL  IPY   G  ASA S +K+ SK    + 
Sbjct: 68  SDKASYPIDFVVPCIHGFPGETGDIQSMLELAGIPYLGCGPEASANSFNKITSKLWYDAL 127

Query: 104 GVPVCPSILVNRFTMDSQHLISPPY------VIKPLKGGSSLGII-VIKKDQSIPLDLLQ 156
            +P  P + + + T  S       +       +K  + GSS+G   V  +DQ  P     
Sbjct: 128 DIPNTPYLFLTQNTPSSIEKAKQAFGHWGSIFVKAARQGSSVGCYKVTTEDQIAPAI--- 184

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYS-SLNS 211
            +++   +Q+L+EQ V   EL       +  L ++   E+  P+  FYSYE KYS + ++
Sbjct: 185 EAAFGFSEQVLVEQAVKPRELEVSAYEMNGKLYISKPGEVIAPEGTFYSYEEKYSANSHA 244

Query: 212 THVLPAKIPLDIYKE-VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270
             VL A+   + +KE +Q  A      +  R +SR DF F     +++  E+N  PGMTP
Sbjct: 245 RTVLEAENLTEKHKELIQTYAERVFIHMKLRHLSRIDF-FLTQEGQIYLNEVNTFPGMTP 303

Query: 271 VSIFPEMAAYAGYSFRELLLWMVEDA 296
           +S+FP+M  + G+ F E L   V + 
Sbjct: 304 ISMFPKMLEHNGHRFSEFLAQCVTNT 329


>gi|254285190|ref|ZP_04960156.1| D-alanine--D-alanine ligase [Vibrio cholerae AM-19226]
 gi|150425193|gb|EDN16970.1| D-alanine--D-alanine ligase [Vibrio cholerae AM-19226]
          Length = 334

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 99/326 (30%), Positives = 152/326 (46%), Gaps = 36/326 (11%)

Query: 3   VLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDVDR----SVGLVLAHLKP------ 51
           +L GG SSE E+SL S       LE    F V ++++ +    S    L +L        
Sbjct: 8   LLCGGGSSEHEISLVSANYIQQQLELTPEFHVIRVEMKKEGWFSEQGALVYLDTNSATLN 67

Query: 52  --------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103
                   D     +HG  GE G +Q++LEL  IPY   G  ASA S +K+ SK    + 
Sbjct: 68  SDKASYPIDFVVPCIHGFPGETGDIQSMLELAGIPYLGCGPEASANSFNKITSKLWYDAL 127

Query: 104 GVPVCPSILVNRFTMDSQHLISPPY------VIKPLKGGSSLGII-VIKKDQSIPLDLLQ 156
            +P  P + + + T  S       +       +K  + GSS+G   V  +DQ  P     
Sbjct: 128 DIPNTPYLFLTQNTPSSIEKAKQAFGHWGSIFVKAARQGSSVGCYKVTTEDQIAPAI--- 184

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYS-SLNS 211
            +++   +Q+LIEQ V   EL       +  L ++   E+  P+  FYSYE KYS + ++
Sbjct: 185 EAAFGFSEQVLIEQAVKPRELEVSAYEMNGKLYISKPGEVIAPEGTFYSYEEKYSANSHA 244

Query: 212 THVLPAKIPLDIYKE-VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270
             VL A+   + +KE +Q  A      +  R +SR DF F     +++  E+N  PGMTP
Sbjct: 245 RTVLEAENLTEKHKELIQTYAERVFIHMKLRHLSRIDF-FLTQEGQIYLNEVNTFPGMTP 303

Query: 271 VSIFPEMAAYAGYSFRELLLWMVEDA 296
           +S+FP+M  + G+ F E L   V + 
Sbjct: 304 ISMFPKMLEHNGHRFSEFLAQCVTNT 329


>gi|15601331|ref|NP_232962.1| D-alanyl-alanine synthetase A [Vibrio cholerae O1 biovar eltor str.
           N16961]
 gi|153823278|ref|ZP_01975945.1| D-alanine--D-alanine ligase [Vibrio cholerae B33]
 gi|227812140|ref|YP_002812150.1| D-alanine--D-alanine ligase [Vibrio cholerae M66-2]
 gi|229506258|ref|ZP_04395767.1| D-alanine--D-alanine ligase [Vibrio cholerae BX 330286]
 gi|229509883|ref|ZP_04399363.1| D-alanine--D-alanine ligase [Vibrio cholerae B33]
 gi|229605798|ref|YP_002876502.1| D-alanyl-alanine synthetase A [Vibrio cholerae MJ-1236]
 gi|254849732|ref|ZP_05239082.1| D-alanyl-alanine synthetase A [Vibrio cholerae MO10]
 gi|255746651|ref|ZP_05420598.1| D-alanine--D-alanine ligase [Vibrio cholera CIRS 101]
 gi|298499384|ref|ZP_07009190.1| D-alanine-D-alanine ligase [Vibrio cholerae MAK 757]
 gi|22095568|sp|Q9KM17|DDL_VIBCH RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|254767746|sp|C3LVI8|DDL_VIBCM RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|9657982|gb|AAF96474.1| D-alanine--D-alanine ligase [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|126519203|gb|EAZ76426.1| D-alanine--D-alanine ligase [Vibrio cholerae B33]
 gi|227011282|gb|ACP07493.1| D-alanine--D-alanine ligase [Vibrio cholerae M66-2]
 gi|229352328|gb|EEO17268.1| D-alanine--D-alanine ligase [Vibrio cholerae B33]
 gi|229356609|gb|EEO21527.1| D-alanine--D-alanine ligase [Vibrio cholerae BX 330286]
 gi|229372284|gb|ACQ62706.1| D-alanine--D-alanine ligase [Vibrio cholerae MJ-1236]
 gi|254845437|gb|EET23851.1| D-alanyl-alanine synthetase A [Vibrio cholerae MO10]
 gi|255736405|gb|EET91803.1| D-alanine--D-alanine ligase [Vibrio cholera CIRS 101]
 gi|297541365|gb|EFH77416.1| D-alanine-D-alanine ligase [Vibrio cholerae MAK 757]
          Length = 334

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 98/326 (30%), Positives = 153/326 (46%), Gaps = 36/326 (11%)

Query: 3   VLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDVDR----SVGLVLAHLKP------ 51
           +L GG SSE E+SL S       LE    F V ++++ +    S    L +L        
Sbjct: 8   LLCGGGSSEHEISLVSANYIQQQLELTPEFHVIRVEMKKEGWFSEQGALVYLDTNSATLN 67

Query: 52  --------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103
                   D     +HG  GE G +Q++LEL  IPY   G  ASA S +K+ SK    + 
Sbjct: 68  SDKASYPIDFVVPCIHGFPGETGDIQSMLELAGIPYLGCGPEASANSFNKITSKLWYDAL 127

Query: 104 GVPVCPSILVNRFTMDSQHLISPPY------VIKPLKGGSSLGII-VIKKDQSIPLDLLQ 156
            +P  P + + + T  S       +       +K  + GSS+G   V  +DQ  P     
Sbjct: 128 DIPNTPYLFLTQNTPSSIDKAKQAFGHWGSIFVKAARQGSSVGCYKVTTEDQIAPAI--- 184

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYS-SLNS 211
            +++   +Q+L+EQ V   EL       +  L ++   E+  P+  FYSYE KYS + ++
Sbjct: 185 EAAFGFSEQVLVEQAVKPRELEVSAYEMNGKLYISKPGEVIAPEGTFYSYEEKYSANSHA 244

Query: 212 THVLPAKIPLDIYKE-VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270
             VL A+   + +KE +Q  A      +  R +SR DF F     +++  E+N  PGMTP
Sbjct: 245 RTVLEAENLTEKHKELIQTYAERVFIHMKLRHLSRIDF-FLTQEGQIYLNEVNTFPGMTP 303

Query: 271 VSIFPEMAAYAGYSFRELLLWMVEDA 296
           +S+FP+M  + G+ F E L+  V + 
Sbjct: 304 ISMFPKMLEHNGHRFSEFLVQCVTNT 329


>gi|2833427|sp|Q47823|DDL_ENTGA RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|1244572|gb|AAB17903.1| D-alanine:D-alanine ligase [Enterococcus gallinarum]
          Length = 316

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 69/228 (30%), Positives = 112/228 (49%), Gaps = 16/228 (7%)

Query: 53  LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--S 110
           + F +LHG  GEDG +Q  LE + +PY  +G+L SA  MDK+ +K ++ + G+P  P   
Sbjct: 85  IVFPLLHGPNGEDGTIQGFLETIGMPYVGAGVLTSACGMDKIMTKYILQAAGIPQVPYVP 144

Query: 111 ILVNRFTMDSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
           +L N +  + + +          P  IKP   GSS+GI   K +    L      ++ + 
Sbjct: 145 VLKNYWKENPKKVFEQCEGSLLYPMFIKPANMGSSVGI--TKAENREELQNALQEAYRYD 202

Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
            + ++EQ ++  E+   V+G+  +  T   EI V    FY Y  KY        +PA+IP
Sbjct: 203 TRAIVEQGIEAREIEVAVLGNEDVRTTMPGEI-VKDVAFYDYNSKYLDNKIEMQIPAQIP 261

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268
            +   + Q  A  A+  +G  G+SR DF F     ++F  E+N  P +
Sbjct: 262 EETQAKAQEFAKKAYTMLGGSGLSRCDF-FLTNKNELFLNELNTIPAL 308


>gi|229526882|ref|ZP_04416286.1| D-alanine--D-alanine ligase [Vibrio cholerae bv. albensis VL426]
 gi|229527573|ref|ZP_04416964.1| D-alanine--D-alanine ligase [Vibrio cholerae 12129(1)]
 gi|229333935|gb|EEN99420.1| D-alanine--D-alanine ligase [Vibrio cholerae 12129(1)]
 gi|229337040|gb|EEO02058.1| D-alanine--D-alanine ligase [Vibrio cholerae bv. albensis VL426]
          Length = 334

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 98/326 (30%), Positives = 152/326 (46%), Gaps = 36/326 (11%)

Query: 3   VLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDVDR----SVGLVLAHLKP------ 51
           +L GG SSE E+SL S       LE    F V ++++ +    S    L +L        
Sbjct: 8   LLCGGGSSEHEISLVSANYIQQQLELTPEFHVIRVEMKKEGWFSEQGALVYLDTNSATLN 67

Query: 52  --------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103
                   D     +HG  GE G +Q++LEL  IPY   G  ASA S +K+ SK    + 
Sbjct: 68  SDKASYPIDFVVPCIHGFPGETGDIQSMLELAGIPYLGCGPEASANSFNKITSKLWYDAL 127

Query: 104 GVPVCPSILVNRFTMDSQHLISPPY------VIKPLKGGSSLGII-VIKKDQSIPLDLLQ 156
            +P  P + + + T  S       +       +K  + GSS+G   V  +DQ  P     
Sbjct: 128 DIPNTPYLFLTQNTPSSIEKAKQAFGHWGSIFVKAARQGSSVGCYKVTTEDQIAPAI--- 184

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYS-SLNS 211
            +++   +Q+L+EQ V   EL       +  L ++   E+  P+  FYSYE KYS + ++
Sbjct: 185 EAAFGFSEQVLVEQAVKPRELEVSAYEMNGKLYISKPGEVIAPEGTFYSYEEKYSANSHA 244

Query: 212 THVLPAKIPLDIYKE-VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270
             VL A+   + +KE +Q  A      +  R +SR DF F     +++  E+N  PGMTP
Sbjct: 245 RTVLEAENLTEKHKELIQTYAERVFIHMKLRHLSRIDF-FLTQEGQIYLNEVNTFPGMTP 303

Query: 271 VSIFPEMAAYAGYSFRELLLWMVEDA 296
           +S+FP+M  + G+ F E L   V + 
Sbjct: 304 ISMFPKMLEHNGHRFSEFLAQCVTNT 329


>gi|51921843|gb|AAU14063.1| VanB [Enterococcus faecalis]
          Length = 271

 Score =  103 bits (258), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 64/206 (31%), Positives = 105/206 (50%), Gaps = 9/206 (4%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+AF VLHG  GEDG +Q + EL  IPY    I +SA  MDK  +  +  + G+ V    
Sbjct: 62  DVAFPVLHGKCGEDGAIQGLFELSGIPYVGCDIQSSAACMDKSLAYILTKNAGIAVPEFQ 121

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
           ++ +        ++ P  +KP + GSS G  V K + +  L+    ++  +  ++LIEQ 
Sbjct: 122 MIEKGDKPEARTLTYPVFVKPARSGSSFG--VTKVNSTEELNAAIEAAGQYDGKILIEQA 179

Query: 172 VDGIELTCGVMGDAS----LDVTEIAVPKSDFYSY---ELKYSSLNSTHVLPAKIPLDIY 224
           + G E+ C VMG+       +V +I +    F  +   E +  S N+  ++PA IP++  
Sbjct: 180 ISGCEVGCAVMGNEDDLIVGEVDQIRLSHGIFRIHQENEPEKGSENAMIIVPADIPVEER 239

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLF 250
             VQ  A   ++ +GCRG++R D   
Sbjct: 240 NRVQETAKKVYRVLGCRGLARVDLFL 265


>gi|2231987|gb|AAB62175.1| vancomycin resistance protein B [Enterococcus faecium]
          Length = 267

 Score =  103 bits (258), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 64/206 (31%), Positives = 105/206 (50%), Gaps = 9/206 (4%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+AF VLHG  GEDG +Q + EL  IPY    I +SA  MDK  +  +  + G+ V    
Sbjct: 57  DVAFPVLHGKCGEDGAIQGLFELSGIPYVGCDIQSSAACMDKSLAYILTKNAGIAVPEFQ 116

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
           ++ +        ++ P  +KP + GSS G  V K + +  L+    ++  +  ++LIEQ 
Sbjct: 117 MIEKGDKPEARTLTYPVFVKPARSGSSFG--VTKVNSTEELNAAIEAAGQYDGKILIEQA 174

Query: 172 VDGIELTCGVMGDAS----LDVTEIAVPKSDFYSY---ELKYSSLNSTHVLPAKIPLDIY 224
           + G E+ C VMG+       +V +I +    F  +   E +  S N+  ++PA IP++  
Sbjct: 175 ISGCEVGCAVMGNEDDLIVGEVDQIRLSHGIFRIHQENEPEKGSENAMIIVPADIPVEER 234

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLF 250
             VQ  A   ++ +GCRG++R D   
Sbjct: 235 NRVQETAKKVYRVLGCRGLARVDLFL 260


>gi|262189715|ref|ZP_06048079.1| D-alanine--D-alanine ligase [Vibrio cholerae CT 5369-93]
 gi|262034402|gb|EEY52778.1| D-alanine--D-alanine ligase [Vibrio cholerae CT 5369-93]
          Length = 334

 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 98/326 (30%), Positives = 152/326 (46%), Gaps = 36/326 (11%)

Query: 3   VLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDVDR----SVGLVLAHLKP------ 51
           +L GG SSE E+SL S       LE    F V ++++ +    S    L +L        
Sbjct: 8   LLCGGGSSEHEISLVSANYIQQQLELTPEFHVIRVEMKKEGWFSEQGALVYLDTNSATLN 67

Query: 52  --------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103
                   D     +HG  GE G +Q++LEL  IPY   G  ASA S +K+ SK    + 
Sbjct: 68  SDKASYPIDFVVPCIHGFPGETGDIQSMLELAGIPYLGCGPEASANSFNKITSKLWYDAL 127

Query: 104 GVPVCPSILVNRFTMDSQHLISPPY------VIKPLKGGSSLGII-VIKKDQSIPLDLLQ 156
            +P  P + + + T  S       +       +K  + GSS+G   V  +DQ  P     
Sbjct: 128 DIPNTPYLFLTQNTPSSIDKAKQAFGHWGSIFVKAARQGSSVGCYKVTTEDQIAPAI--- 184

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYS-SLNS 211
            +++   +Q+L+EQ V   EL       +  L ++   E+  P+  FYSYE KYS + ++
Sbjct: 185 EAAFGFSEQVLVEQAVKPRELEVSAYEMNGKLYISKPGEVIAPEGTFYSYEEKYSANSHA 244

Query: 212 THVLPAKIPLDIYKE-VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270
             VL A+   + +KE +Q  A      +  R +SR DF F     +++  E+N  PGMTP
Sbjct: 245 RTVLEAENLTEKHKELIQTYAERVFIHMNLRHLSRIDF-FLTQEGQIYLNEVNTFPGMTP 303

Query: 271 VSIFPEMAAYAGYSFRELLLWMVEDA 296
           +S+FP+M  + G+ F E L   V + 
Sbjct: 304 ISMFPKMLEHNGHRFSEFLAQCVTNT 329


>gi|237807008|ref|YP_002891448.1| D-alanyl-alanine synthetase A [Tolumonas auensis DSM 9187]
 gi|259645175|sp|C4L8J2|DDL_TOLAT RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|237499269|gb|ACQ91862.1| D-alanine/D-alanine ligase [Tolumonas auensis DSM 9187]
          Length = 330

 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 94/317 (29%), Positives = 146/317 (46%), Gaps = 33/317 (10%)

Query: 3   VLMGGISSEREVSLSSGKACASALED-AGFKVSQIDV-----------------DRSVGL 44
           +L GG  SE E+SL S     S L++ A   V+++++                 DR +  
Sbjct: 8   LLCGGGGSEHEISLLSANYLESQLKELAEVSVTRVELFPDHWQTNDGRSCHLGMDRQLHF 67

Query: 45  VLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCG 104
                  D     +HG  GE G +Q++LEL+ +PY   G   S L  +K+ +K  +S+  
Sbjct: 68  ANEAKPVDFVVPCIHGFPGETGDIQSMLELIGLPYLGCGSEGSKLCFNKVSTKLWLSALD 127

Query: 105 VPVCPSILV---NRFTMDSQHLISPPY---VIKPLKGGSSLGIIVIKKDQSIPLDLLQSS 158
           +P  P + +   N       H     +    +K    GSS+G    K   +  L    ++
Sbjct: 128 IPNTPFLFLSDNNEAAHAQAHTAFRNWGAVFVKAASQGSSVG--CYKVTDAAKLSEAVNA 185

Query: 159 SWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYSS-LNSTH 213
           ++ + DQ+L+E+ V   EL   V   +  L  T   EIA P   FYSYE KYSS  NST 
Sbjct: 186 AFGYSDQVLVEKAVRPRELEVAVYRYNDQLVATRPGEIATPSDSFYSYEEKYSSGSNSTT 245

Query: 214 VLPAKIPLDIY-KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
            L A    D     ++  A  A   +G + +SR DF       ++   EIN  PGMTP+S
Sbjct: 246 YLEAPGLSDAQISTIREYALKAFTQLGLKDLSRIDFFLTE-DNEILLNEINTFPGMTPIS 304

Query: 273 IFPEMAAYAGYSFRELL 289
           +FP++  + G +F++ L
Sbjct: 305 MFPKLLEHHGDNFKQFL 321


>gi|295397629|ref|ZP_06807704.1| D-alanine-D-alanine ligase [Aerococcus viridans ATCC 11563]
 gi|294974092|gb|EFG49844.1| D-alanine-D-alanine ligase [Aerococcus viridans ATCC 11563]
          Length = 350

 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 86/334 (25%), Positives = 155/334 (46%), Gaps = 46/334 (13%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS--------------------- 41
           VL GG S+E ++S+ +  A    ++     V+ + +DR                      
Sbjct: 5   VLFGGKSAEHDISILTATAIMQNIQYDRHSVTPVYIDRQGHWFKGSNMTEKPDAQVNFQL 64

Query: 42  --VGL------VLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDK 93
             VG       VL      + F  LHG  GEDG +Q + E L + Y  +G+LAS+  MDK
Sbjct: 65  DQVGQAIVPTDVLLEGTDQIVFPALHGPNGEDGTIQGLFESLNVAYVGAGVLASSAGMDK 124

Query: 94  MRSKQVVSSCGVPVCPSILVNRFTMDSQHLI---------SPPYVIKPLKGGSSLGIIVI 144
           + SK +++  G+P  P + +  +  +    +         + P  +KP   GSS+G+   
Sbjct: 125 IVSKHLLNQAGLPQVPFVALTSYEWEKDQEVAIEKVTNELAYPVFVKPANMGSSVGVSEA 184

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVT---EIAVPKSDFY 200
             D S  L    + ++ +  ++L+E  V    E+   ++G+  + V+   E+A  +  FY
Sbjct: 185 IDDAS--LLAALTLAFRYDRRVLVETSVQNPREVELAILGNDEVFVSVPGELAKGQG-FY 241

Query: 201 SYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260
           +YE KY    +  ++PA I      ++Q  A  A  A+   G+SR+DF     + +++  
Sbjct: 242 NYEEKYLKNTTEMIIPAAIDEPTVAKLQDYARKAFLALDGSGLSRADFFLTE-TGEIYIN 300

Query: 261 EINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           E+N  PG T  S++P +   +G S+ +LL  +++
Sbjct: 301 EVNTLPGFTQFSMYPSLWEASGKSYADLLEELIQ 334


>gi|229513248|ref|ZP_04402713.1| D-alanine--D-alanine ligase [Vibrio cholerae TMA 21]
 gi|229349658|gb|EEO14613.1| D-alanine--D-alanine ligase [Vibrio cholerae TMA 21]
          Length = 334

 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 98/326 (30%), Positives = 152/326 (46%), Gaps = 36/326 (11%)

Query: 3   VLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDVDR----SVGLVLAHLKP------ 51
           +L GG SSE E+SL S       LE    F V ++++ +    S    L +L        
Sbjct: 8   LLCGGGSSEHEISLVSANYIQQQLELTPEFHVIRVEMKKEGWFSEQGALVYLDTNSATLN 67

Query: 52  --------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103
                   D     +HG  GE G +Q++LEL  IPY   G  ASA S +K+ SK    + 
Sbjct: 68  SDNTSYPIDFVVPCIHGFPGETGDIQSMLELAGIPYLGCGPEASANSFNKITSKLWYDAL 127

Query: 104 GVPVCPSILVNRFTMDSQHLISPPY------VIKPLKGGSSLGII-VIKKDQSIPLDLLQ 156
            +P  P + + + T  S       +       +K  + GSS+G   V  +DQ  P     
Sbjct: 128 DIPNTPYLFLTQNTPSSIEKAKQAFGHWGSIFVKAARQGSSVGCYKVTTEDQIAPAI--- 184

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYS-SLNS 211
            +++   +Q+L+EQ V   EL       +  L ++   E+  P+  FYSYE KYS + ++
Sbjct: 185 EAAFGFSEQVLVEQAVKPRELEVSAYEMNGKLYISKPGEVIAPEGTFYSYEEKYSANSHA 244

Query: 212 THVLPAKIPLDIYKE-VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270
             VL A+   + +KE +Q  A      +  R +SR DF F     +++  E+N  PGMTP
Sbjct: 245 RTVLEAENLTEKHKELIQTYAERVFIHMKLRHLSRIDF-FLTQDGQIYLNEVNTFPGMTP 303

Query: 271 VSIFPEMAAYAGYSFRELLLWMVEDA 296
           +S+FP+M  + G+ F E L   V + 
Sbjct: 304 ISMFPKMLEHNGHRFSEFLAQCVTNT 329


>gi|149922083|ref|ZP_01910523.1| D-alanine--D-alanine ligase [Plesiocystis pacifica SIR-1]
 gi|149817020|gb|EDM76502.1| D-alanine--D-alanine ligase [Plesiocystis pacifica SIR-1]
          Length = 674

 Score =  103 bits (256), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 88/290 (30%), Positives = 137/290 (47%), Gaps = 19/290 (6%)

Query: 21  ACASALEDAGFKVSQIDVDRSVGLVLAHLK---PDLAFNVLHGNFG--EDGLVQAILELL 75
           A A+ L D G +V   D+   +G  +A L+   PDL  N   G  G   + L  A+ E L
Sbjct: 28  AIATMLRDLGHQVGLFDMSNELGQAVAELERYAPDLVLNTAEGQGGPLREALFPALFEEL 87

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP---PYVIKP 132
            + YT SG    AL++DK R+K+VV++ GVP   S L+  +T  +    S    P +IKP
Sbjct: 88  GLAYTGSGPTTCALTLDKHRTKEVVAALGVPTPRSFLIEDYTELADIPASSWPIPAIIKP 147

Query: 133 LKGGSSLGI---IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT------CGVMG 183
              GSS G+    +    + +PL L+          +L+E +V G ++T       G + 
Sbjct: 148 NFEGSSKGVSGHSIAHDPREVPL-LVSRLLARFEAGVLVEAFVPGRDVTVPWLEVVGALP 206

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
            A     +  V     Y YELK          PAK+   + +++ R++     A+  R +
Sbjct: 207 AAEYSFGDAPVDAQQIYDYELKQDGGAVQVQTPAKLAPALARKLARMSERIVAALNVRDL 266

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +R DF   P S + ++LEIN  P + P +   E AA AG S  +++L  V
Sbjct: 267 ARLDFRITP-SGEPYFLEINALPSLEPGASIYESAALAGLSQPDMVLGSV 315



 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 91/281 (32%), Positives = 139/281 (49%), Gaps = 23/281 (8%)

Query: 7   GISSEREV-SLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGE- 64
           G  SE E  S  +  A A AL   G  V +++    +   L   K  LAFN+  G+ G  
Sbjct: 353 GDDSEAEFDSRETVDALADALGQLGLDVVELEATPDLVHTLPRAKLALAFNIAEGSRGRC 412

Query: 65  -DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            + +V A+LELL +PYT S  +A AL++DK  +K  V++ G+   PS  V R   D    
Sbjct: 413 RELIVPALLELLGVPYTGSDAVAMALTLDKSLAKAAVAAAGL-RTPSWAVLRRGSDPLPT 471

Query: 124 -ISPPYVIKPLKGGSSLGIIVIKKDQSIPLD--LLQSSSW----NHGDQLLIEQYVDGIE 176
            +  P  +KP+  GSS GI     D ++ LD   L++ +W     +   +L+E+Y+ G E
Sbjct: 472 GLRYPLFLKPIAEGSSKGI----DDGAVVLDERSLRTRAWALLARYHQPVLVEEYLPGRE 527

Query: 177 LTCGV---MGDASLDVTEIAVPKSD---FYSYELKYSS-LNSTHVLPAKIPLDIYKEVQR 229
            T G+   +  A L   EI    SD   FY +E K S+     +  PA++  D+   ++ 
Sbjct: 528 FTVGIVEALHPAVLAPMEIIHDDSDSHAFYGFESKLSADAGVRYQAPAQVDADLDDALRS 587

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270
            A  A +A+GCR ++R D   D      F +E N  PG++P
Sbjct: 588 AAQAAFRALGCRDVARIDLRLDAAGEAHF-IECNPLPGLSP 627


>gi|83815518|ref|YP_446302.1| D-alanine--D-alanine ligase [Salinibacter ruber DSM 13855]
 gi|294508238|ref|YP_003572296.1| D-alanine--D-alanine ligase A [Salinibacter ruber M8]
 gi|83756912|gb|ABC45025.1| D-alanine--D-alanine ligase [Salinibacter ruber DSM 13855]
 gi|294344566|emb|CBH25344.1| D-alanine--D-alanine ligase A [Salinibacter ruber M8]
          Length = 434

 Score =  103 bits (256), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 76/272 (27%), Positives = 127/272 (46%), Gaps = 45/272 (16%)

Query: 39  DRSVGLVLAHLKPDLAFNV------LHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
           DR+ G++    +P L   +      LHG  GE+G VQ + E   +PYT +G+  SAL MD
Sbjct: 107 DRAPGILKRLQRPALRRRIDVMLLGLHGGPGENGGVQGLCETFNVPYTSAGVFGSALGMD 166

Query: 93  KMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPLKGGSSLGIIV 143
           K+ SK+V    G+PV   + +              + +  +  P V+KP + GSS+GI  
Sbjct: 167 KVMSKRVCRQAGIPVVDFVALREGEWAGREAAALDECEATLDYPLVVKPARCGSSIGIAQ 226

Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI-ELTCGVMGD---ASLDVTEIAVPKSD- 198
           +  +    LD     +  + D++++E+ V+ + E+ C V+GD   A+  V E  VP  D 
Sbjct: 227 V--NTRAELDAAIEDALRYDDKVVVEKAVEALREINCSVLGDGHEATPSVLEEPVPSDDD 284

Query: 199 -FYSYELKY--------------SSLNST--------HVLPAKIPLDIYKEVQRLAFLAH 235
              +++ KY               S  S+         ++PA +  +  + +Q LA    
Sbjct: 285 AVLTFQDKYMREDGEAAKAEGGTKSAESSPEGMAAQDRIVPANLSDERTETIQDLAVRIF 344

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPG 267
               C G+ R DF+ D  + +V++ EIN  PG
Sbjct: 345 HQFECAGVVRIDFMIDESTGRVYFNEINTIPG 376


>gi|188501453|gb|ACD54586.1| D-alanyl-D-alanine ligase-like protein [Adineta vaga]
          Length = 349

 Score =  103 bits (256), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 82/281 (29%), Positives = 141/281 (50%), Gaps = 26/281 (9%)

Query: 27  EDAGFKVSQIDVDRS-VGLVLAH---LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
           ED+     +I +DR+   L L +   +K  LAF ++ G  GEDG +Q  L++  +P+   
Sbjct: 56  EDSNNNEQKIHIDRNNFSLTLPNQETIKFKLAFLLIGGAPGEDGQIQGYLQISNVPFIGC 115

Query: 83  GILASALSMDKMRSKQVVSSCG---VPVCPSILVNR----------FTMDSQHLISPPYV 129
            +L+SA++ +K  + ++V S     + V PSI V R            +++ H    P +
Sbjct: 116 NLLSSAITFNKSIANRIVRSFNSSIIHVSPSIDVFRSVSVDDSLVLHALETNHF-RLPLI 174

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG---VMGDAS 186
           +KP   GSSLG+  I +     L+   + ++   +Q+L+EQ++DG ELT G   + GD  
Sbjct: 175 VKPADSGSSLGVTKITEISQ--LNEAFNVAFKESNQILVEQFIDGRELTVGLFKINGDIQ 232

Query: 187 -LDVTEIAVPK-SDFYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
            L +TEI   + S F+  E K+     T V+ PA +  +I K V+      ++ +   G+
Sbjct: 233 VLPITEIVHQRASGFFDSETKFEGSPETQVITPANLNEEIKKRVEIGVRELYEKLNLSGL 292

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
            R D +      K+F+LE+N  P  T  SI  +  A + ++
Sbjct: 293 VRIDLMLRLPDEKIFFLEVNTAPSQTEYSIIMQQMAQSEWA 333


>gi|121725889|ref|ZP_01679189.1| D-alanine--D-alanine ligase [Vibrio cholerae V52]
 gi|121631654|gb|EAX64022.1| D-alanine--D-alanine ligase [Vibrio cholerae V52]
          Length = 334

 Score =  103 bits (256), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 98/326 (30%), Positives = 152/326 (46%), Gaps = 36/326 (11%)

Query: 3   VLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDVDR----SVGLVLAHLKP------ 51
           +L GG SSE E+SL S       LE    F V ++++ +    S    L +L        
Sbjct: 8   LLCGGGSSEHEISLVSANYIQQQLELTPEFHVIRVEMKKEGWFSEQGALVYLDTNSATLN 67

Query: 52  --------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103
                   D     +HG  GE G +Q++LEL  IPY   G  ASA S +K+ SK    + 
Sbjct: 68  SDKASYPIDFVVPCIHGFPGETGDIQSMLELAGIPYLGCGPEASANSFNKITSKLWYDAL 127

Query: 104 GVPVCPSILVNRFTMDSQHLISPPY------VIKPLKGGSSLGII-VIKKDQSIPLDLLQ 156
            +P  P + + + T  S       +       +K  + GSS+G   V  +DQ  P     
Sbjct: 128 DIPNTPYLFLTQNTPSSIDKAKQAFGHWGSIFVKAARQGSSVGCYKVTTEDQIAPAI--- 184

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYS-SLNS 211
            +++   +Q+L+EQ V   EL       +  L ++   E+  P+  FYSYE KYS + ++
Sbjct: 185 EAAFGFSEQVLVEQAVKPRELEVSAYEMNGKLYISKPGEVIAPEGTFYSYEEKYSANSHA 244

Query: 212 THVLPAKIPLDIYKE-VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270
             VL A+   + +KE +Q  A      +  R +SR DF F     +++  E+N  PGMTP
Sbjct: 245 RTVLEAENLTEKHKELIQTYAERVFIHMKLRHLSRIDF-FLTQEGQIYLNEVNTFPGMTP 303

Query: 271 VSIFPEMAAYAGYSFRELLLWMVEDA 296
           +S+FP+M  + G+ F E L   V + 
Sbjct: 304 ISMFPKMLEHNGHRFSEFLAQCVTNT 329


>gi|153800674|ref|ZP_01955260.1| D-alanine--D-alanine ligase [Vibrio cholerae MZO-3]
 gi|124123809|gb|EAY42552.1| D-alanine--D-alanine ligase [Vibrio cholerae MZO-3]
          Length = 334

 Score =  103 bits (256), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 98/326 (30%), Positives = 151/326 (46%), Gaps = 36/326 (11%)

Query: 3   VLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDVDR----SVGLVLAHLKP------ 51
           +L GG SSE E+SL S       LE    F V ++++ +    S    L +L        
Sbjct: 8   LLCGGGSSEHEISLVSANYIQQQLELTPEFHVIRVEMKKEGWFSEQGALVYLDTNSATLN 67

Query: 52  --------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103
                   D     +HG  GE G +Q++LEL  IPY   G  ASA S +K+ SK    + 
Sbjct: 68  SDNTSYPIDFVVPCIHGFPGETGDIQSMLELAGIPYLGCGPEASANSFNKITSKLWYDAL 127

Query: 104 GVPVCPSILVNRFTMDSQHLISPPY------VIKPLKGGSSLGII-VIKKDQSIPLDLLQ 156
           G+P  P + + +    S       +       +K  + GSS+G   V  +DQ  P     
Sbjct: 128 GIPNTPYLFLTQNAPSSIEKAKQAFGHWGSIFVKAARQGSSVGCYKVTTEDQIAPAI--- 184

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYS-SLNS 211
            +++   +Q+L+EQ V   EL       +  L ++   E+  P+  FYSYE KYS + ++
Sbjct: 185 EAAFGFSEQVLVEQAVKPRELEVSAYEMNGKLYISKPGEVIAPEGTFYSYEEKYSANSHA 244

Query: 212 THVLPAKIPLDIYKE-VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270
             VL A+   +  KE +Q  A      +  R +SR DF F     +++  E+N  PGMTP
Sbjct: 245 RTVLEAENLTEKQKELIQTYAEHVFIHMKLRHLSRIDF-FLTQEGQIYLNEVNTFPGMTP 303

Query: 271 VSIFPEMAAYAGYSFRELLLWMVEDA 296
           +S+FP+M  + G+ F E L   V + 
Sbjct: 304 ISMFPKMLEHNGHRFSEFLAQCVTNT 329


>gi|150391440|ref|YP_001321489.1| D-alanine--D-alanine ligase [Alkaliphilus metalliredigens QYMF]
 gi|149951302|gb|ABR49830.1| D-alanine--D-alanine ligase [Alkaliphilus metalliredigens QYMF]
          Length = 358

 Score =  103 bits (256), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 81/321 (25%), Positives = 149/321 (46%), Gaps = 50/321 (15%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-----RSVGLVLAHLKP------ 51
           VL GG S E  VSL S  A  ++L+   + V  I +       ++G+V   +K       
Sbjct: 7   VLCGGKSVEHRVSLISASAIINSLDKKKYHVYPIYISDEGIWSNLGIVEDEIKEISELMY 66

Query: 52  -----------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
                                  ++ F  LHG  GEDG +Q +LE+L+IPY  +G+++SA
Sbjct: 67  QSSNTVISSIETFLRSSFNEREQNIVFPALHGTNGEDGTIQGLLEILDIPYVGNGVMSSA 126

Query: 89  LSMDKMRSKQVVSSCGVP--VCPSILVNRFTMDS-------QHLISPPYVIKPLKGGSSL 139
           + +DK+ +K + +   +P      +L +++  D        +  I  P  +KP   GSS+
Sbjct: 127 IGIDKVVTKDLFAKHNIPQGKYTRLLQHQWKKDKLFSIERIEETIGYPAYVKPASLGSSV 186

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA--VPKS 197
           GI      + +   + ++ S+   D+L+IE+ + G E+   V+G+     + +   + + 
Sbjct: 187 GINRCANREELEAAIHEAFSFE--DKLVIEEEIIGREMQISVVGNEFPKASVVGEFIQER 244

Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
            F  Y  KY+      V+PAK+   + + ++ +A  +   + C G+ R D+      R  
Sbjct: 245 QFMDYAAKYTDGKLIQVIPAKLTEKVSELMREVAIKSFDVLNCSGLVRVDYFVTDDER-- 302

Query: 258 FWL-EINVQPGMTPVSIFPEM 277
           F++ E+N  PG T +S+ P +
Sbjct: 303 FYVNEVNTMPGFTKLSMTPAL 323


>gi|315181561|gb|ADT88474.1| D-alanine--D-alanine ligase [Vibrio furnissii NCTC 11218]
          Length = 334

 Score =  103 bits (256), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 95/329 (28%), Positives = 147/329 (44%), Gaps = 40/329 (12%)

Query: 3   VLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDVDRS-----VGLVLA--------- 47
           +L GG SSE EVSL S       L     F V ++++ +       G ++          
Sbjct: 8   LLCGGGSSEHEVSLVSANYLQQQLSLTPDFDVVRVEMKKEGWFSDTGEIVYLDTNSATLN 67

Query: 48  ----HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103
                LK D     +HG  GE G +Q++ EL  IPY   G  AS+ S +K+ SK    + 
Sbjct: 68  GEGLSLKIDFVIPCIHGYPGETGDIQSMFELAGIPYLGCGPEASSNSFNKITSKLWYDAL 127

Query: 104 GVPVCPSILVNRFTMDSQHLISPPYV------IKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
            +P  P + ++     +       +       IK  + GSS+G   + K+  I       
Sbjct: 128 DIPNTPYLFLSENNAQALKNTQDAFAKWGSLFIKAARQGSSVGCYKVTKEDQI--AAAID 185

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYS--SLNS 211
           +++++ +Q+L+EQ V   EL       +  L +T   EI  P+  FYSYE KYS  S + 
Sbjct: 186 AAFSYSEQVLVEQAVKPRELEVAAYEMNGELFITKPGEIIAPEDAFYSYEEKYSTDSHSR 245

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271
           T V    +  +    + ++A      +  R +SR DF   P    V+  E+N  PGMTP+
Sbjct: 246 TEVEAGNLTDEQQALIHQVAQKVFTHMKLRHLSRIDFFLTPEGH-VYLNEVNTFPGMTPI 304

Query: 272 SIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           S+FP+M    G+ F E L      A C+R
Sbjct: 305 SMFPKMLENNGHQFDEFL------ADCVR 327


>gi|147671582|ref|YP_001215354.1| D-alanyl-alanine synthetase A [Vibrio cholerae O395]
 gi|262168425|ref|ZP_06036121.1| D-alanine--D-alanine ligase [Vibrio cholerae RC27]
 gi|189083064|sp|A5F083|DDL_VIBC3 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|146313965|gb|ABQ18505.1| D-alanine--D-alanine ligase [Vibrio cholerae O395]
 gi|227015368|gb|ACP11577.1| D-alanine--D-alanine ligase [Vibrio cholerae O395]
 gi|262022954|gb|EEY41659.1| D-alanine--D-alanine ligase [Vibrio cholerae RC27]
          Length = 329

 Score =  103 bits (256), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 98/326 (30%), Positives = 152/326 (46%), Gaps = 36/326 (11%)

Query: 3   VLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDVDR----SVGLVLAHLKP------ 51
           +L GG SSE E+SL S       LE    F V ++++ +    S    L +L        
Sbjct: 8   LLCGGGSSEHEISLVSANYIQQQLELTPEFHVIRVEMKKEGWFSEQGALVYLDTNSATLN 67

Query: 52  --------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103
                   D     +HG  GE G +Q++LEL  IPY   G  ASA S +K+ SK    + 
Sbjct: 68  SDKASYPIDFVVPCIHGFPGETGDIQSMLELAGIPYLGCGPEASANSFNKITSKLWYDAL 127

Query: 104 GVPVCPSILVNRFTMDSQHLISPPY------VIKPLKGGSSLGII-VIKKDQSIPLDLLQ 156
            +P  P + + + T  S       +       +K  + GSS+G   V  +DQ  P     
Sbjct: 128 DIPNTPYLFLTQNTPSSIDKAKQAFGHWGSIFVKAARQGSSVGCYKVTTEDQIAPAI--- 184

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYS-SLNS 211
            +++   +Q+L+EQ V   EL       +  L ++   E+  P+  FYSYE KYS + ++
Sbjct: 185 EAAFGFSEQVLVEQAVKPRELEVSAYEMNGKLYISKPGEVIAPEGTFYSYEEKYSANSHA 244

Query: 212 THVLPAKIPLDIYKE-VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270
             VL A+   + +KE +Q  A      +  R +SR DF F     +++  E+N  PGMTP
Sbjct: 245 RTVLEAENLTEKHKELIQTYAERVFIHMKLRHLSRIDF-FLTQEGQIYLNEVNTFPGMTP 303

Query: 271 VSIFPEMAAYAGYSFRELLLWMVEDA 296
           +S+FP+M  + G+ F E L   V + 
Sbjct: 304 ISMFPKMLEHNGHRFSEFLAQCVTNT 329


>gi|262403615|ref|ZP_06080173.1| D-alanine--D-alanine ligase [Vibrio sp. RC586]
 gi|262350119|gb|EEY99254.1| D-alanine--D-alanine ligase [Vibrio sp. RC586]
          Length = 334

 Score =  102 bits (255), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 92/330 (27%), Positives = 151/330 (45%), Gaps = 44/330 (13%)

Query: 3   VLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDVDR----SVGLVLAHLKP------ 51
           +L GG SSE E+SL S       L     F V ++++ +    S    L +L        
Sbjct: 8   LLCGGGSSEHEISLVSANYIQQQLALTPQFNVIRVEMKKDGWFSEQGELVYLDTNSATLN 67

Query: 52  --------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103
                   D     +HG  GE G +Q++LEL  IPY   G  ASA S +K+ SK    + 
Sbjct: 68  GDKISQPIDFVVPCIHGFPGETGDIQSMLELAGIPYLGCGPEASANSFNKITSKLWYDAL 127

Query: 104 GVPVCPSILVNRFTMDSQHLISPPY------VIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
            +P  P + + + T DS       +       +K  + GSS+G   + +++ I   +   
Sbjct: 128 DIPNTPYLFLTQNTTDSIEKAQQAFRNWGSIFVKAARQGSSVGCYKVTREEQIAPAI--E 185

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYSS----- 208
           +++   +Q+L+E+ V   EL       +  L ++   E+  P+  FYSYE KYS+     
Sbjct: 186 AAFGFSEQVLVEKAVKPRELEVAAYEMNGQLHISKPGEVIAPEDAFYSYEEKYSASSHSR 245

Query: 209 --LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
             + + H+  A+  L     +Q+ A      +  R +SR DF F     +++  E+N  P
Sbjct: 246 TVIEAEHLTEAQHNL-----IQQCAARVFIHMKLRHLSRIDF-FLTQDGQIYLNEVNTFP 299

Query: 267 GMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           GMTP+S+FP+M  + G+ F E L   V + 
Sbjct: 300 GMTPISMFPKMLEHNGHQFSEFLALCVTNT 329


>gi|171318067|ref|ZP_02907237.1| D-alanine--D-alanine ligase [Burkholderia ambifaria MEX-5]
 gi|171096746|gb|EDT41630.1| D-alanine--D-alanine ligase [Burkholderia ambifaria MEX-5]
          Length = 336

 Score =  102 bits (255), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 81/282 (28%), Positives = 133/282 (47%), Gaps = 17/282 (6%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + +L GG SSE   S+++  A     +      + I+ D    L     K D   N+ +G
Sbjct: 20  LGILAGGYSSESHGSITNAHALLPYFQRVCQSAAIIEYDGKPSLATRLAKCDFVLNICYG 79

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119
             GEDG +Q ++  LEIPY+ S +LASA+ MDK   K +V + G       LV+    D 
Sbjct: 80  VGGEDGQIQGLMSSLEIPYSGSPVLASAIGMDKNVFKAMVRNWGFATPNGRLVSSLDPDL 139

Query: 120 --SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
             +Q L   P+V+KPL  G S G++ +    ++ + +      +H D  ++E+Y+ G   
Sbjct: 140 TKNQDLGRGPFVVKPLSEGDSEGVVFVDSLDNLAMVINDIPKASH-DHWMVEEYIQGDHG 198

Query: 178 TCGVMGDA-SLDVTEIAV----PKSDFYSYELKYSSLN--STHVLPAKIPLDIYKEVQRL 230
           T  +  D   L +++  V         Y   LKY   N  S H+L   +   + +E+   
Sbjct: 199 TVSMFRDEDGLHISDAIVFDLPDGHRLYDQALKYRIDNPISIHLLDPAVGERLEREIS-- 256

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
             + + A+ C G++R D++    S    +LEIN  PG+ P S
Sbjct: 257 --MMYMALQCEGVTRFDYVI--RSGTPHYLEINTIPGLYPGS 294


>gi|160879787|ref|YP_001558755.1| D-alanine--D-alanine ligase domain-containing protein [Clostridium
           phytofermentans ISDg]
 gi|160428453|gb|ABX42016.1| D-alanine--D-alanine ligase domain protein [Clostridium
           phytofermentans ISDg]
          Length = 347

 Score =  102 bits (255), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 88/307 (28%), Positives = 148/307 (48%), Gaps = 23/307 (7%)

Query: 8   ISSEREV-SLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG--NFGE 64
           I +E E  S+ +  A  +ALE     +  ++ D  +   L     D+ FN+  G    G 
Sbjct: 36  IDAEAEYDSIDTVLAIKNALECDNCHIELMEADTDLPKRLKETPVDIVFNIAEGLKGRGR 95

Query: 65  DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL- 123
           +  V A+L +  IP+T S      L++DK   K+V+S+  +   P   V  FT D   L 
Sbjct: 96  EAEVPAVLNMFNIPFTGSDETTLCLALDKALCKRVLSTYRIRT-PKYRV--FTKDDNRLN 152

Query: 124 --ISPPYVIKPLKGGSSLGI--IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
              S P ++KP   GSS GI  I I  ++     L+  +   +G  +L+E+Y+DG E T 
Sbjct: 153 TNFSFPCIVKPNAEGSSKGISDICIATNKEELKTLVTDNIKAYGQDMLVEEYIDGREFTV 212

Query: 180 GVMGDAS-------LDVTEIAVPKSDFYSYELK--YSSLNSTHVLPAKIPLDIYKEVQRL 230
           GV+G+         +++  +   K + YS+ +K  Y  L   +  P+K+  DI +E+  +
Sbjct: 213 GVLGNGDDVHVFSPMEIIYLKKNKFNIYSFNVKQDYKKL-IRYECPSKLDPDIEEEMVFM 271

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP-VSIFPEMAAYAGYSFRELL 289
           A    + + C   SR DF  +    K +++EIN  PG+ P  S FP +A + G  +  L+
Sbjct: 272 AKKIFKVLSCHDFSRIDFRLNS-EGKPYFIEINPLPGLAPGYSDFPMLAEFCGMDYVTLV 330

Query: 290 LWMVEDA 296
             ++ +A
Sbjct: 331 RSILRNA 337


>gi|262164168|ref|ZP_06031906.1| D-alanine--D-alanine ligase [Vibrio mimicus VM223]
 gi|262026548|gb|EEY45215.1| D-alanine--D-alanine ligase [Vibrio mimicus VM223]
          Length = 334

 Score =  102 bits (255), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 94/319 (29%), Positives = 146/319 (45%), Gaps = 36/319 (11%)

Query: 3   VLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDVDRSVGLVLAH------------- 48
           +L GG SSE E+SL S       LE    F V ++++ +  G    H             
Sbjct: 8   LLCGGGSSEHEISLVSANYIQQQLELTPEFNVVRVEMKKE-GWFSKHGELVYLDTNSATL 66

Query: 49  ------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS 102
                    D     +HG  GE G +Q++LEL  IPY   G  ASA S +K+ SK    +
Sbjct: 67  NGDNISYPIDFVVPCIHGFPGETGDIQSMLELAGIPYLGCGPEASANSFNKITSKLWYDA 126

Query: 103 CGVPVCPSILVNRFTMDSQHLISPPY------VIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
            G+P  P + + + T DS       +       +K  + GSS+G    K      +    
Sbjct: 127 LGIPNTPYLFLTQNTSDSVEKARQAFRNWGSIFVKAARQGSSVG--CYKVTNEEQIAAAI 184

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYSSLNST 212
            +++   +Q+L+E+ V   EL       +  L ++   EI  P+  FYSYE KYS+ + +
Sbjct: 185 EAAFGFSEQVLVEKAVKPRELEVAAYEMNGKLFISKPGEIIAPEDAFYSYEEKYSATSHS 244

Query: 213 HVL-PAKIPLDIYKE-VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270
             L  A+   D  +E +Q+ A      +  R +SR DF F     +++  E+N  PGMTP
Sbjct: 245 RTLIEAENLTDEQRELIQQSAERVFVHMKLRHLSRIDF-FLTQDGQIYLNEVNTFPGMTP 303

Query: 271 VSIFPEMAAYAGYSFRELL 289
           +S+FP+M  + G+ F E L
Sbjct: 304 ISMFPKMLEHNGHRFSEFL 322


>gi|157363761|ref|YP_001470528.1| D-alanine--D-alanine ligase [Thermotoga lettingae TMO]
 gi|157314365|gb|ABV33464.1| D-alanine--D-alanine ligase [Thermotoga lettingae TMO]
          Length = 305

 Score =  102 bits (255), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 80/243 (32%), Positives = 128/243 (52%), Gaps = 21/243 (8%)

Query: 68  VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP- 126
           V AILELL+IP T SGI+  AL +DK  +K +++  GVP    I +       Q  I P 
Sbjct: 64  VPAILELLKIPSTGSGIIGHALCIDKTITKIILNHYGVPTPKFISLE----PGQETIPPV 119

Query: 127 ---PYVIKPLKGGSSLGI---IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              P +IKP + GS+ G+    V+K+D ++   +    S  H    LIEQ+VDG E + G
Sbjct: 120 DFYPVIIKPSREGSARGLSADSVVKEDFALKKAVKVIHSEFH-QPALIEQFVDGREFSVG 178

Query: 181 VMGDASLDVTEI---AVPK--SDFYSYELK-YSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
           ++    L + EI    +P     FYSY +K Y    + ++ PA+I  ++   + + A  A
Sbjct: 179 IVAGEILPILEIDFSTLPDGLERFYSYRVKHYYGEQTRYICPAQIDTELKDRISKYALTA 238

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP-VSIFPEMAAYAGYSFRELLLWMV 293
            +A+  R  +R D        ++++LE+N  P +TP  S   +MA  AGY++ +L++ + 
Sbjct: 239 FKALRLRNYARMDLRVK--DGQIYFLEVNSLPMLTPGYSDIVKMAEAAGYTYEDLIMKIF 296

Query: 294 EDA 296
            DA
Sbjct: 297 MDA 299


>gi|297587783|ref|ZP_06946427.1| D-alanine--D-alanine ligase [Finegoldia magna ATCC 53516]
 gi|297574472|gb|EFH93192.1| D-alanine--D-alanine ligase [Finegoldia magna ATCC 53516]
          Length = 350

 Score =  102 bits (255), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 79/315 (25%), Positives = 147/315 (46%), Gaps = 49/315 (15%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR---------------------- 40
           VL GG S+E EVS++S +   + L    + VS I V R                      
Sbjct: 7   VLYGGPSTEHEVSITSARTLINNLSKEKYNVSAIFVRRDKKFIMKENITEEIKTDDELVL 66

Query: 41  --------SVGLVLAHLKPD--LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
                   SV   ++ + P+  + F  +HG++GEDG +Q  +++L++P+    +L SAL 
Sbjct: 67  DTELSVIESVSDCISKINPENTVIFPAIHGSYGEDGTIQGFIKVLDLPFVGCNVLGSALC 126

Query: 91  MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIKPLKGGSSLGIIVI 144
           MDK  +  +     +P    +++ +   D  +L       S    +KP   GSS+G++  
Sbjct: 127 MDKGYTNDIFELNKIPQAKYVVLCK--NDEYNLKEIFDKTSKAVYVKPCNAGSSVGVMRA 184

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK---SDFYS 201
           + ++   L+    +++ +  ++L+E+ + G EL   VMG+ +   +   V +    +F+ 
Sbjct: 185 ETEEE--LEQAIQNAFLYDRRILVEEEIIGPELQIAVMGNDNPVASRPGVYQIHDVEFFD 242

Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL- 260
           Y+ KY+   +  + P  +   +  + +RLA   ++ +   G SR D     +     W+ 
Sbjct: 243 YDAKYNDAKTEMLTPFPMDEQLELKARRLAEKVYKIMSLSGFSRVDMF---VRDNELWVN 299

Query: 261 EINVQPGMTPVSIFP 275
           EIN  PG+TP S+FP
Sbjct: 300 EINTVPGLTPHSMFP 314


>gi|86147981|ref|ZP_01066284.1| D-alanylalanine synthetase [Vibrio sp. MED222]
 gi|85834205|gb|EAQ52360.1| D-alanylalanine synthetase [Vibrio sp. MED222]
          Length = 331

 Score =  102 bits (254), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 91/331 (27%), Positives = 150/331 (45%), Gaps = 44/331 (13%)

Query: 3   VLMGGISSEREVSLSSGKACASALED-AGFKVSQIDV------------------DRSVG 43
           +L GG SSE EVS+ S       L   A F V ++++                  D+++ 
Sbjct: 8   LLCGGGSSEHEVSIVSANYLFEQLNSVADFNVVRVEIKNEGWCLDSGELVYLDINDQTLR 67

Query: 44  LVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103
                 K D     +HG  GE G +Q++ E+ +IPY   G  AS  S +K+ SK    + 
Sbjct: 68  GDNLESKVDFIVPCIHGFPGETGDIQSLFEMAKIPYLGCGSEASNNSFNKITSKLWYDAL 127

Query: 104 GVPVCPSILVNRFTMDSQHLISPPY------VIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
           G+P  P + ++  T  +    +  +       +K  + GSS+G   +  +Q+  L    +
Sbjct: 128 GIPNTPYLFLSDNTEQAHAQATQAFESWGKVFVKAARQGSSVGCYQV--NQAEELSEAIN 185

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYSSLNSTH 213
            ++   DQ+LIE+ V   EL       D  L ++   E+  P   FYSYE KYS+   +H
Sbjct: 186 KAFTFSDQVLIEKSVVPRELEVAAYEIDGELQISKPGEVIAPNGAFYSYEEKYSA--DSH 243

Query: 214 VLPAKIPLDIYKEVQRL----AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
            +      ++  E + L    A      +  R +SR DF F     +++  E+N  PGMT
Sbjct: 244 SITEVEATNLTDEQRELIADSARKVFTQMKLRHLSRIDF-FLTQDNEIYLNEVNTFPGMT 302

Query: 270 PVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           P+S+FP+M  + G+ F + L       +C+R
Sbjct: 303 PISMFPKMVEHDGHKFSQFL------ENCVR 327


>gi|1857220|gb|AAB49636.1| vancomycin resistance protein [Enterococcus faecalis]
          Length = 261

 Score =  102 bits (254), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 63/206 (30%), Positives = 104/206 (50%), Gaps = 9/206 (4%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+AF VLHG  GEDG +Q + EL  IPY    I +SA  MDK  +  +  + G+ V    
Sbjct: 58  DVAFPVLHGKCGEDGAIQGLFELSGIPYVGCDIQSSAACMDKSLAYILTKNAGIAVPEFQ 117

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
           ++++        ++ P  +KP + GSS G+  +   +   L+    ++  +  ++LIEQ 
Sbjct: 118 MIDKGDKPETGALTYPVFVKPARSGSSFGLTKVNGTEE--LNAAIEAAGQYDGKILIEQA 175

Query: 172 VDGIELTCGVMGDAS----LDVTEIAVPKSDFYSY---ELKYSSLNSTHVLPAKIPLDIY 224
           + G E+ C VMG+       +V +I +    F  +   E +  S N+   +PA IP+   
Sbjct: 176 ISGCEVGCAVMGNEDDLIVGEVDQIRLSHGIFRIHQENEPEKGSENAMITVPADIPVGER 235

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLF 250
             VQ  A   ++A+GCRG++R D   
Sbjct: 236 NRVQETAKKVYRALGCRGLARVDLFL 261


>gi|188501473|gb|ACD54605.1| D-alanyl-D-alanine ligase-like protein [Adineta vaga]
          Length = 349

 Score =  102 bits (254), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 80/281 (28%), Positives = 142/281 (50%), Gaps = 26/281 (9%)

Query: 27  EDAGFKVSQIDVDRS-VGLVLAH---LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
           ED+     +I +DR+   L L +   +K  LAF ++ G  GEDG +Q  L++  +P+   
Sbjct: 56  EDSNNNGQRIHIDRNNFSLTLPNQETVKFKLAFLLIGGAPGEDGQIQGYLQISNVPFIGC 115

Query: 83  GILASALSMDKMRSKQVVSSCG---VPVCPSILVNR----------FTMDSQHLISPPYV 129
            +L+SA++ +K  + ++V S     + V PSI V R            +++ H    P +
Sbjct: 116 NLLSSAITFNKSIANRIVRSFNSSIIHVSPSIDVFRSVSVDDLLVLHALETNHF-RLPLI 174

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG---VMGDAS 186
           +KP   GSSLG+  I +     L+   + ++   +Q+L+EQ++DG ELT G   + GD  
Sbjct: 175 VKPADSGSSLGVTKITEISQ--LNEAFNVAFKESNQILVEQFIDGRELTVGLFKINGDIQ 232

Query: 187 -LDVTEIAVPK-SDFYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
            L +TEI   + S F+  E K+     T V+ PA +  ++ K+V+      ++ +   G+
Sbjct: 233 VLPITEIVHQRASGFFDSETKFEGSPETQVITPANLNEEVKKQVEAGVRELYEKLNLSGL 292

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
            R D +      K+F+LE+N  P  T  S+  +  A + ++
Sbjct: 293 VRIDLMLKLPDEKIFFLEVNTAPSQTEYSLIMQQMAQSEWA 333


>gi|3913422|sp|Q48745|DDL_LEUME RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|1185361|gb|AAA87679.1| putative D-alanine:D-alanine ligase [Leuconostoc mesenteroides]
          Length = 377

 Score =  102 bits (253), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 99/348 (28%), Positives = 168/348 (48%), Gaps = 58/348 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAG------FKVSQ------------------- 35
           +A++ GG SSE +VS  S +   +A+E         F ++Q                   
Sbjct: 6   VALIFGGNSSEHDVSKRSAQNFYNAIEATDKYEIIVFAIAQNGFFLDTESSKKILALEDE 65

Query: 36  ---ID-----VDRSVGLVLAH-LKP----DLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
              +D     VD S  L   H LK     D+ F V+HGN GEDG +Q + +LL+ PY  +
Sbjct: 66  QPIVDAFMKTVDTSDPLARIHALKSAGDFDIFFPVVHGNLGEDGTLQGLFKLLDKPYVGA 125

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILV-----NRFTMDS-QHLISPPYVIKPLKGG 136
            +   A+S DK  +K++++  G+     I+V     N ++ D     +     +K    G
Sbjct: 126 PLRGHAVSFDKALTKELLTVNGIRNTKYIVVDPESANNWSWDKIVAELGNIVFVKAANQG 185

Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI-ELTCGVMGDASLDVTEIA-- 193
           SS+GI  +   +     L  S S+ +  ++LIE+ V+G  EL  GV+G+    V+EI   
Sbjct: 186 SSVGISRVTNAEEYTEAL--SDSFQYDYKVLIEEAVNGARELEVGVIGNDQPLVSEIGAH 243

Query: 194 -VPKS----DFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
            VP       +Y Y  K+   ++ H  +PA++  ++ KEV+++A  A++ +  RG +R D
Sbjct: 244 TVPNQGSGDGWYDYNNKFVDNSAVHFEIPAQLSPEVTKEVKQMALDAYKVLNLRGEARMD 303

Query: 248 FLFDPLSRKVFWL-EINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           FL D     V +L E N  PG T +S+F  +  Y+  +  +L+  +++
Sbjct: 304 FLLD--ENNVPYLGEPNTLPGFTNMSLFKRLWDYSDINNAKLVDMLID 349


>gi|262173765|ref|ZP_06041442.1| D-alanine--D-alanine ligase [Vibrio mimicus MB-451]
 gi|261891123|gb|EEY37110.1| D-alanine--D-alanine ligase [Vibrio mimicus MB-451]
          Length = 334

 Score =  102 bits (253), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 94/319 (29%), Positives = 145/319 (45%), Gaps = 36/319 (11%)

Query: 3   VLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDVDRSVGLVLAH------------- 48
           +L GG SSE E+SL S       LE    F V ++++ +  G    H             
Sbjct: 8   LLCGGGSSEHEISLVSANYIQQQLELTPEFNVVRVEMKKE-GWFSKHGELVYLDTNSATL 66

Query: 49  ------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS 102
                    D     +HG  GE G +Q++LEL  IPY   G  ASA S +K+ SK    +
Sbjct: 67  NGDNISYPIDFVVPCIHGFPGETGDIQSMLELAGIPYLGCGPEASANSFNKITSKLWYDA 126

Query: 103 CGVPVCPSILVNRFTMDSQHLISPPY------VIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
            G+P  P + + + T DS       +       +K  + GSS+G    K      +    
Sbjct: 127 LGIPNTPYLFLTQNTSDSVEKARQAFRNWGSIFVKAARQGSSVG--CYKVTNEEQIAAAI 184

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYSSLNST 212
            +++   +Q+L+E+ V   EL       +  L ++   EI  P+  FYSYE KYS+ + +
Sbjct: 185 EAAFGFSEQVLVEKAVKPRELEVAAYEMNGKLFISKPGEIIAPEDAFYSYEEKYSATSHS 244

Query: 213 HVL-PAKIPLDIYKE-VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270
             L  A+   D  +E +Q+ A      +  R +SR DF F      ++  E+N  PGMTP
Sbjct: 245 RTLIEAENLTDEQRELIQQSAERVFVHMKLRHLSRIDF-FLTQDGHIYLNEVNTFPGMTP 303

Query: 271 VSIFPEMAAYAGYSFRELL 289
           +S+FP+M  + G+ F E L
Sbjct: 304 ISMFPKMLEHNGHRFSEFL 322


>gi|241894960|ref|ZP_04782256.1| D-alanine--D-alanine ligase [Weissella paramesenteroides ATCC
           33313]
 gi|241871678|gb|EER75429.1| D-alanine--D-alanine ligase [Weissella paramesenteroides ATCC
           33313]
          Length = 382

 Score =  102 bits (253), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 74/252 (29%), Positives = 131/252 (51%), Gaps = 18/252 (7%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D  + V+HGN GEDG +QA+  LL+ PY   GI ASA+S DK  +K++++  GV     +
Sbjct: 95  DFFYPVVHGNLGEDGTLQALFRLLKKPYLGPGIAASAMSFDKDLTKRILNQAGVRNTNYV 154

Query: 112 LVN-----RFTMDS--QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164
           L+       +T D   + L S    +K    GSS+G+  +  +      L  S  +++  
Sbjct: 155 LLTDQNYQDYTYDELVKELDSEVLFVKAASQGSSVGVSRVTNEDEYKAALKDSFQYDY-- 212

Query: 165 QLLIEQYVDG-IELTCGVMGDASLDVTE---IAVPKSD-FYSYELKYSSLNS-THVLPAK 218
           ++L+E  +D   E+   ++G+ +   +    I +P+ D +Y Y  K+   +     LP +
Sbjct: 213 KILVEGALDKPREVFISILGNENPRASRLGGIVLPEEDVWYDYNNKFVDASGMVFELPVE 272

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL-EINVQPGMTPVSIFPEM 277
           +   +  E+  +A  A++A+G  G++R DF+ D     V +L E N  PG T +S++P+M
Sbjct: 273 LDQALTDEITDMALRAYKALGLVGLTRMDFMID--KNGVPYLGEPNTLPGFTNISLYPQM 330

Query: 278 AAYAGYSFRELL 289
              +G S+  L+
Sbjct: 331 WEVSGISYTHLI 342


>gi|258622707|ref|ZP_05717726.1| D-alanine--D-alanine ligase [Vibrio mimicus VM573]
 gi|258585020|gb|EEW09750.1| D-alanine--D-alanine ligase [Vibrio mimicus VM573]
          Length = 334

 Score =  102 bits (253), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 94/319 (29%), Positives = 145/319 (45%), Gaps = 36/319 (11%)

Query: 3   VLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDVDRSVGLVLAH------------- 48
           +L GG SSE E+SL S       LE    F V ++++ +  G    H             
Sbjct: 8   LLCGGGSSEHEISLVSANYIQQQLELTPEFNVVRVEMKKE-GWFSKHGELVYLDTNSATL 66

Query: 49  ------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS 102
                    D     +HG  GE G +Q++LEL  IPY   G  ASA S +K+ SK    +
Sbjct: 67  NGDNISYPIDFVVPCIHGFPGETGDIQSMLELAGIPYLGCGPEASANSFNKITSKLWYDA 126

Query: 103 CGVPVCPSILVNRFTMDSQHLISPPY------VIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
            G+P  P + + + T DS       +       +K  + GSS+G    K      +    
Sbjct: 127 LGIPNTPYLFLTQNTSDSVEKARQAFRNWGSIFVKAARQGSSVG--CYKVTSEEQIAAAI 184

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYSSLNST 212
            +++   +Q+L+E+ V   EL       +  L ++   EI  P+  FYSYE KYS+ + +
Sbjct: 185 EAAFGFSEQVLVEKAVKPRELEVAAYEMNGKLFISKPGEIIAPEDAFYSYEEKYSATSHS 244

Query: 213 HVL-PAKIPLDIYKE-VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270
             L  A+   D  +E +Q+ A      +  R +SR DF F      ++  E+N  PGMTP
Sbjct: 245 RTLIEAENLTDEQRELIQQSAERVFVHMKLRHLSRIDF-FLTQDDHIYLNEVNTFPGMTP 303

Query: 271 VSIFPEMAAYAGYSFRELL 289
           +S+FP+M  + G+ F E L
Sbjct: 304 ISMFPKMLEHNGHRFSEFL 322


>gi|268610478|ref|ZP_06144205.1| D-alanine-D-alanine ligase and related ATP-grasp enzyme
           [Ruminococcus flavefaciens FD-1]
          Length = 401

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 77/246 (31%), Positives = 120/246 (48%), Gaps = 32/246 (13%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+AF ++HG   EDG +Q  L+ L++PY    +LASA+ MDK   K ++   G PV    
Sbjct: 101 DIAFPIVHGTNVEDGALQGYLQTLDLPYVGCDVLASAVGMDKYVMKILLKEAGFPVLDCC 160

Query: 112 LVNRFTMDS-QHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
             + + +D   ++I+        P ++KP+  GSS+GI   K   S+   +    ++   
Sbjct: 161 RFSSYEIDDMDNMIAQVEAKFGYPVIVKPINLGSSVGISKAKDRDSLINSI--EEAFQFA 218

Query: 164 DQLLIEQYVDGI-ELTCGVMGD---ASLDVTEIAVPKS--DFYSYELKYSS--------- 208
           D++L+E  V  + E+ C V+GD   A   V E  V  S  +  SY+ KY           
Sbjct: 219 DRILVEPAVVQLKEINCSVVGDSEEAEASVCEEPVQASSDEILSYDQKYKGDGGKNGSKS 278

Query: 209 ---LNSTHVLPAKIPLDIYKE----VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
                    L  KIP +I  E    ++R A  A + +GC G++R DF+ D  + KV+  E
Sbjct: 279 GGGSKGMATLKRKIPAEITPEQDEFIRRTAVDAFRYLGCNGVTRIDFMIDMATDKVYINE 338

Query: 262 INVQPG 267
           IN  PG
Sbjct: 339 INTIPG 344


>gi|300765781|ref|ZP_07075756.1| D-Ala-D-Ala ligase [Listeria monocytogenes FSL N1-017]
 gi|300513475|gb|EFK40547.1| D-Ala-D-Ala ligase [Listeria monocytogenes FSL N1-017]
          Length = 310

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 61/215 (28%), Positives = 110/215 (51%), Gaps = 22/215 (10%)

Query: 53  LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
           + F +LHG  GEDG VQ + E+L IPY  +G+LAS+ +MDK+  K++ +  G+P  P++ 
Sbjct: 100 VVFPLLHGPNGEDGTVQGLFEVLNIPYVGNGVLASSAAMDKIVMKKIFADAGIPQVPAVA 159

Query: 113 VN---------RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
           V              + + +++ P  +KP   GSS+GI   K      L    + ++ + 
Sbjct: 160 VRLIDWKNYQAEMVAEMEEVLTYPVFVKPANLGSSVGI--SKATNKKELADAMTEAFLYD 217

Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK--------SDFYSYELKYSSLNSTHVL 215
            ++++EQ V   E+  GV+G+   D    +VP         + FY Y+ KY   N+  ++
Sbjct: 218 RRVVVEQGVVAREIEMGVLGN---DTPVCSVPGEILPEGAVATFYDYKAKYQDNNTALII 274

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
           P ++  +I ++++  A  A   +   G+ R+DF  
Sbjct: 275 PTEVDPEILEQMKEYAVQAFLGLDASGLVRADFFL 309


>gi|328470679|gb|EGF41590.1| D-alanyl-alanine synthetase A [Vibrio parahaemolyticus 10329]
          Length = 329

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 89/321 (27%), Positives = 149/321 (46%), Gaps = 40/321 (12%)

Query: 3   VLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDVDRSVGLV-----LAHLKPDLA-- 54
           +L GG SSE E+SL S       L      KV+++++ ++ G V     L +L  +    
Sbjct: 7   LLCGGGSSEHEISLLSANFVEQQLNLIQNVKVTRVEI-KNEGWVTDQGELVYLDLNTKKL 65

Query: 55  ----FN--------VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS 102
               FN         +HG  GE G +Q++ E+  IPY   G  AS+ S +K+ SK    +
Sbjct: 66  CSNEFNQTIDFIVPCIHGFPGETGDIQSLFEIAGIPYLGCGPEASSNSFNKITSKLWYDA 125

Query: 103 CGVPVCPSILVNRFTMDSQHLISPPY------VIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
             +P  P + + R    +       +       +K  + GSS+G   + + Q+I   +  
Sbjct: 126 LDIPNTPYLFLTRNDEHAHRQAEQAFEKWGKVFVKAARQGSSVGCYSVAEKQAIAKAV-- 183

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYSSLNST 212
           + ++ + DQ+L+E+ V   EL       +  L +T   E+  P   FYSY+ KYSS  S+
Sbjct: 184 NDAFGYSDQVLVEKAVKPRELEVAAYEMNGELHITKPGEVIAPDGAFYSYDEKYSS--SS 241

Query: 213 HVLPAKIPLDIYKE----VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268
           H L      ++ +E    +   +    + +  R +SR DF       +++  E+N  PGM
Sbjct: 242 HSLTEVEAKNLTQEQIDKIHHASETVFKQMNLRHLSRIDFFLTE-DNEIYLNEVNTFPGM 300

Query: 269 TPVSIFPEMAAYAGYSFRELL 289
           TP+S+FP+M    G+ F E L
Sbjct: 301 TPISMFPKMLQNNGHKFHEFL 321


>gi|258626983|ref|ZP_05721782.1| D-alanine--D-alanine ligase [Vibrio mimicus VM603]
 gi|258580736|gb|EEW05686.1| D-alanine--D-alanine ligase [Vibrio mimicus VM603]
          Length = 334

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 94/319 (29%), Positives = 145/319 (45%), Gaps = 36/319 (11%)

Query: 3   VLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDVDRSVGLVLAH------------- 48
           +L GG SSE E+SL S       LE    F V ++++ +  G    H             
Sbjct: 8   LLCGGGSSEHEISLVSANYIQQQLELTPEFNVVRVEMKKE-GWFSKHGELVYLDTNSATL 66

Query: 49  ------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS 102
                    D     +HG  GE G +Q++LEL  IPY   G  ASA S +K+ SK    +
Sbjct: 67  NGDNISYPIDFVVPCIHGFPGETGDIQSMLELAGIPYLGCGPEASANSFNKITSKLWYDA 126

Query: 103 CGVPVCPSILVNRFTMDSQHLISPPY------VIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
            G+P  P + + + T DS       +       +K  + GSS+G    K      +    
Sbjct: 127 LGIPNTPYLFLTQNTSDSVEKARQAFRNWGSIFVKAARQGSSVG--CYKVTSEEQIAAAI 184

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYSSLNST 212
            +++   +Q+L+E+ V   EL       +  L ++   EI  P+  FYSYE KYS+ + +
Sbjct: 185 EAAFGFSEQVLVEKAVKPRELEVAAYEMNGKLFISKPGEIIAPEDAFYSYEEKYSATSHS 244

Query: 213 HVL-PAKIPLDIYKE-VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270
             L  A+   D  +E +Q+ A      +  R +SR DF F      ++  E+N  PGMTP
Sbjct: 245 RTLIEAENLTDEQRELIQQSAERVFVHMKLRHLSRIDF-FLTQDGHIYLNEVNTFPGMTP 303

Query: 271 VSIFPEMAAYAGYSFRELL 289
           +S+FP+M  + G+ F E L
Sbjct: 304 ISMFPKMLEHNGHRFSEFL 322


>gi|52842818|ref|YP_096617.1| D-alanyl-alanine synthetase A [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|52629929|gb|AAU28670.1| D-alanine-D-alanine ligase A [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
          Length = 368

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 85/340 (25%), Positives = 158/340 (46%), Gaps = 55/340 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDL------- 53
           + +L GG S E EVSL S  +    L+   + +  I +D+S G    H   DL       
Sbjct: 11  LVLLYGGKSGEHEVSLVSAASVLKHLDSEKYHIIPIAMDKS-GRFHRHDYNDLLACSDKL 69

Query: 54  -------------------------AFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
                                     F V+HG   EDG +Q +LEL  + Y    +L+SA
Sbjct: 70  PVVTEKSTPLEGLLINGRLAVDAKIVFPVVHGPLYEDGCLQGLLELAGVAYVGCDVLSSA 129

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVN---------RFTMDSQHLISPPYVIKPLKGGSSL 139
           + MDK  ++++    G+      L++         +F  +       P  +KP   GSS+
Sbjct: 130 IGMDKDMARRLACINGLKSARYKLLSWHANASERQQFCHEVASEFGWPLFVKPCSLGSSV 189

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA--------SLDVTE 191
           GI   K +    L+   + +  + +++L+E+++ G E+   V+ ++        S+ V E
Sbjct: 190 GIH--KANNMDELNAAVADALRYDEEILVEEFIVGREIELAVLENSIPCGKPRVSM-VGE 246

Query: 192 IAVPKSD-FYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
           I V   D +YSY  KY   + T  ++PA++   + +++++ A      + C+G++R DF 
Sbjct: 247 IKVNHPDGYYSYTAKYLESSQTDLIIPAQLNNSLEEQLKQAAANIFSYLKCKGMARVDFF 306

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
            +  + ++++ EIN  PG T +S++P++    G ++ +LL
Sbjct: 307 VNDKTEEIYFNEINTLPGFTSISMYPKLWQATGIAYPDLL 346


>gi|28900741|ref|NP_800396.1| D-alanyl-alanine synthetase A [Vibrio parahaemolyticus RIMD
           2210633]
 gi|153838099|ref|ZP_01990766.1| D-alanine--D-alanine ligase [Vibrio parahaemolyticus AQ3810]
 gi|260365385|ref|ZP_05777927.1| D-alanine--D-alanine ligase [Vibrio parahaemolyticus K5030]
 gi|260877677|ref|ZP_05890032.1| D-alanine--D-alanine ligase [Vibrio parahaemolyticus AN-5034]
 gi|260896057|ref|ZP_05904553.1| D-alanine--D-alanine ligase [Vibrio parahaemolyticus Peru-466]
 gi|260902128|ref|ZP_05910523.1| D-alanine--D-alanine ligase [Vibrio parahaemolyticus AQ4037]
 gi|32699435|sp|Q87HS0|DDL_VIBPA RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|28809187|dbj|BAC62229.1| D-alanine-D-alanine ligase [Vibrio parahaemolyticus RIMD 2210633]
 gi|149748485|gb|EDM59344.1| D-alanine--D-alanine ligase [Vibrio parahaemolyticus AQ3810]
 gi|308088124|gb|EFO37819.1| D-alanine--D-alanine ligase [Vibrio parahaemolyticus Peru-466]
 gi|308090884|gb|EFO40579.1| D-alanine--D-alanine ligase [Vibrio parahaemolyticus AN-5034]
 gi|308109929|gb|EFO47469.1| D-alanine--D-alanine ligase [Vibrio parahaemolyticus AQ4037]
 gi|308112832|gb|EFO50372.1| D-alanine--D-alanine ligase [Vibrio parahaemolyticus K5030]
          Length = 329

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 86/321 (26%), Positives = 147/321 (45%), Gaps = 40/321 (12%)

Query: 3   VLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDVDRSVGLVL--------------- 46
           +L GG SSE E+SL S       L      KV+++++ ++ G V                
Sbjct: 7   LLCGGGSSEHEISLLSANFVEQQLNLIQNVKVTRVEI-KNEGWVTDQGELVYLDLNTKQL 65

Query: 47  ----AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS 102
               ++   D     +HG  GE G +Q++ E+  IPY   G  AS+ S +K+ SK    +
Sbjct: 66  CSNESNQTIDFIVPCIHGFPGETGDIQSLFEIAGIPYLGCGPEASSNSFNKITSKLWYDA 125

Query: 103 CGVPVCPSILVNRFTMDSQHLISPPY------VIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
             +P  P + + R    +       +       +K  + GSS+G   + + Q+I   +  
Sbjct: 126 LDIPNTPYLFLTRNDEHAHRQAEQAFEKWGKVFVKAARQGSSVGCYSVAEKQAIAKAV-- 183

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYSSLNST 212
           + ++ + DQ+L+E+ V   EL       +  L +T   E+  P   FYSY+ KYSS  S+
Sbjct: 184 NDAFGYSDQVLVEKAVKPRELEVAAYEMNGELHITKPGEVIAPDGAFYSYDEKYSS--SS 241

Query: 213 HVLPAKIPLDIYKE----VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268
           H L      ++ +E    ++  +    + +  R +SR DF       +++  E+N  PGM
Sbjct: 242 HSLTEVEAKNLTQEQIDKIRHASETVFKQMNLRHLSRIDFFLTE-DNEIYLNEVNTFPGM 300

Query: 269 TPVSIFPEMAAYAGYSFRELL 289
           TP+S+FP+M    G+ F E L
Sbjct: 301 TPISMFPKMLQNNGHKFHEFL 321


>gi|296111077|ref|YP_003621458.1| D-alanine--D-alanine ligase [Leuconostoc kimchii IMSNU 11154]
 gi|295832608|gb|ADG40489.1| D-alanine--D-alanine ligase [Leuconostoc kimchii IMSNU 11154]
          Length = 377

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 95/347 (27%), Positives = 166/347 (47%), Gaps = 58/347 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAG------FKVSQ----IDVDRSVG-LVLAHL 49
           +A+L GG SSE +VS  S +    A+   G      F ++Q    +D + S   L LA  
Sbjct: 6   VALLFGGNSSEHDVSKRSAQNFYDAIMATGKYDVTVFAIAQNGYFLDPESSKKILALADE 65

Query: 50  KP---------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
           +P                           D+ F V+HGN GEDG +Q +  LL  PY  +
Sbjct: 66  QPIVDAYMAKVDTSDPLARINALRNGGDFDIFFPVVHGNLGEDGTLQGLFRLLNKPYVGA 125

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNR-----FTMDS-QHLISPPYVIKPLKGG 136
            +   A+S DK+ +K++++   +     I+++      +T D   + +     +K    G
Sbjct: 126 PLRGHAVSFDKVLTKELLTVNHIRNTNYIVIDTETAKDWTWDKITNELGSVVFVKAANQG 185

Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIA-- 193
           SS+GI  +K   ++  +   + S+ +  ++LIEQ V G  EL  GV+G+    V+EI   
Sbjct: 186 SSVGISRVK--NAVEFETALADSFQYDYKVLIEQAVKGPRELEVGVIGNEEPIVSEIGAH 243

Query: 194 -VPKS----DFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
            VP+      +Y Y  K+   ++ +  +PA++P ++ +EV+ +A  +++ +  RG +R D
Sbjct: 244 TVPEQGEGDGWYDYNNKFVDNSAVYFEIPAQLPKEVTEEVKAMAIKSYKVLNLRGEARMD 303

Query: 248 FLFDPLSRKVFWL-EINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           FL D     V +L E N  PG T +S+F  +  Y+     +L+  M+
Sbjct: 304 FLLD--ENNVPYLGEPNTLPGFTNMSLFKRLWDYSDIDNAKLVDMMI 348


>gi|153832853|ref|ZP_01985520.1| D-alanine--D-alanine ligase [Vibrio harveyi HY01]
 gi|148870987|gb|EDL69877.1| D-alanine--D-alanine ligase [Vibrio harveyi HY01]
          Length = 329

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 92/321 (28%), Positives = 152/321 (47%), Gaps = 40/321 (12%)

Query: 3   VLMGGISSEREVSLSSGKACASAL-------------EDAGFKVSQ-----IDVDRSVGL 44
           +L GG SSE E+SL S       L             ++ G+  +Q     +D+++   L
Sbjct: 7   LLCGGGSSEHEISLLSANFVEQQLNLIENVSVTRVEIKNEGWVTNQGELVYLDLNQK-KL 65

Query: 45  VLAHLKPDLAFNV--LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS 102
              +L  D+ F V  +HG  GE G +Q++ E+  IPY   G  AS+ S +K+ SK    +
Sbjct: 66  CSDNLSLDVDFIVPCIHGFPGETGDIQSMFEIAGIPYLGCGPEASSNSFNKITSKLWYDA 125

Query: 103 CGVPVCPSILVNRFTMDSQHLISPPY------VIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
            G+P  P + + R    +       +       +K  + GSS+G   + + QS+   +  
Sbjct: 126 IGIPNTPYLFLTRNDEQAHEQALQAFDKWGKVFVKAARQGSSVGCYSVTEKQSVSQAV-- 183

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYSSLNST 212
           + ++ + +Q+L+E+ V   EL       +  L +T   E+  P   FYSY+ KYS+  S+
Sbjct: 184 NDAFGYSEQVLVEKSVKPRELEVAAYEMNGELHITKPGEVIAPDGAFYSYDEKYST--SS 241

Query: 213 HVLP---AKIPLDIYKEVQRLAF-LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268
           H L    AK   +   E  R+A     + +  R +SR DF       +++  E+N  PGM
Sbjct: 242 HSLTEVEAKNLTEAQVEAIRVASETVFKQMNLRHLSRIDFFLTE-DGEIYLNEVNTFPGM 300

Query: 269 TPVSIFPEMAAYAGYSFRELL 289
           TP+S+FP+M    G+ F E L
Sbjct: 301 TPISMFPKMLQNNGHKFHEFL 321


>gi|256545629|ref|ZP_05472987.1| D-alanine--D-alanine ligase [Anaerococcus vaginalis ATCC 51170]
 gi|256398706|gb|EEU12325.1| D-alanine--D-alanine ligase [Anaerococcus vaginalis ATCC 51170]
          Length = 348

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 81/340 (23%), Positives = 151/340 (44%), Gaps = 53/340 (15%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR---------------------- 40
           +L GG SSE E++L S    +  L+   + +  + +D+                      
Sbjct: 6   LLCGGPSSEHEIALRSALNISKNLDKNKYNLKIVYIDKKGRFSKAFDFINTDDEFELVKE 65

Query: 41  -------SVGLVLAHLKPDLAFNVL-----HGNFGEDGLVQAILELLEIPYTHSGILASA 88
                  S+   L  LK     N +     HG +GEDG +Q  L+ ++  Y  +G+L+S+
Sbjct: 66  CKENILESISDFLLELKDKDKENTIIIPCVHGTYGEDGTIQGFLDAIDTAYIGNGLLSSS 125

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNR------FTMDSQHLISPPYVIKPLKGGSSLGII 142
           + MDK+ +  +     +     +  N       F    +  I  P ++KP   GSS+G  
Sbjct: 126 VCMDKVTANDIFEKNKLKQARYLYANEESFDLDFAKKCEEYIKFPMIVKPSANGSSVG-- 183

Query: 143 VIKKDQSIPLDLLQ--SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD-- 198
            + K ++I  +LL+    S  + +++L+E+ + G E+   ++GD  L  ++     +D  
Sbjct: 184 -VNKAENID-ELLKFGKESLKYDEKILVEEAIIGQEVEIAIIGDNKLIASKPGAYVTDHI 241

Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
           F  Y+ KY   ++  +LP  +   + K++   A   ++A  C+G +R D     L    F
Sbjct: 242 FLDYDAKYFDKSTKEMLPYPMDEKLEKDLLEFAKKCYKACNCQGFARVDIF---LKDNEF 298

Query: 259 WL-EINVQPGMTPVSIFPEMAAYA-GYSFRELLLWMVEDA 296
           ++ EIN  PG TP S F  +   +    F ++L  ++E+ 
Sbjct: 299 YINEINTFPGFTPTSFFARLCKISFDLEFSQILDMLIEEG 338


>gi|320160017|ref|YP_004173241.1| putative D-alanine--D-alanine ligase [Anaerolinea thermophila
           UNI-1]
 gi|319993870|dbj|BAJ62641.1| putative D-alanine--D-alanine ligase [Anaerolinea thermophila
           UNI-1]
          Length = 400

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 90/309 (29%), Positives = 137/309 (44%), Gaps = 47/309 (15%)

Query: 20  KACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGE--DGLVQAILELLEI 77
           +A  SA+E  G     +  D ++   L   +PD+ FN+  G  G+  +  V A+LE+L I
Sbjct: 62  EAIQSAIESDGHTTRFLSADHTLLDSLREYQPDICFNIAEGIIGDAREAQVPALLEMLGI 121

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---ISPPYVIKPLK 134
           PYT S +LA+AL +DK  +K++  + G+P         F    + L   +S P  +KP +
Sbjct: 122 PYTASRVLANALGLDKTMTKRIWRNLGIPTA---SFQEFITGDEPLEADLSFPLFVKPAR 178

Query: 135 GGSSLGI----IVIKKDQSIPLDLLQSSSW---NHGDQLLIEQYVDGIELTCGVMGDAS- 186
            G+ +G+    IV  ++Q     L +   W    +    L+E Y+ G E T GV+G A  
Sbjct: 179 EGTGMGMDEGSIVYNENQ-----LRRRVKWVIEAYHQPALVETYLPGREFTVGVLGRADA 233

Query: 187 --------------------LDVTEIAVPKSDFYSYELKYSSLNSTHV----LPAKIPLD 222
                               L+V          Y Y  K        V     PA++  D
Sbjct: 234 RRWSPKPHLYRADGFHRFPILEVDNSNTVTPGVYGYAAKTLHPGEEGVPGFICPAQVEPD 293

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP-VSIFPEMAAYA 281
           + +++  LA  AH AIG   +SR D   D        LEIN  PG+TP  S    +A   
Sbjct: 294 LAEKLWTLAIRAHNAIGALDVSRVDVRLDAHGNPRL-LEINTLPGLTPGFSDLCVIAQAE 352

Query: 282 GYSFRELLL 290
           G S+R+L+L
Sbjct: 353 GLSYRDLIL 361


>gi|190359178|sp|Q5ZSA7|DDL_LEGPH RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
          Length = 364

 Score =  101 bits (251), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 85/340 (25%), Positives = 158/340 (46%), Gaps = 55/340 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDL------- 53
           + +L GG S E EVSL S  +    L+   + +  I +D+S G    H   DL       
Sbjct: 7   LVLLYGGKSGEHEVSLVSAASVLKHLDSEKYHIIPIAMDKS-GRFHRHDYNDLLACSDKL 65

Query: 54  -------------------------AFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
                                     F V+HG   EDG +Q +LEL  + Y    +L+SA
Sbjct: 66  PVVTEKSTPLEGLLINGRLAVDAKIVFPVVHGPLYEDGCLQGLLELAGVAYVGCDVLSSA 125

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVN---------RFTMDSQHLISPPYVIKPLKGGSSL 139
           + MDK  ++++    G+      L++         +F  +       P  +KP   GSS+
Sbjct: 126 IGMDKDMARRLACINGLKSARYKLLSWHANASERQQFCHEVASEFGWPLFVKPCSLGSSV 185

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA--------SLDVTE 191
           GI   K +    L+   + +  + +++L+E+++ G E+   V+ ++        S+ V E
Sbjct: 186 GIH--KANNMDELNAAVADALRYDEEILVEEFIVGREIELAVLENSIPCGKPRVSM-VGE 242

Query: 192 IAVPKSD-FYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
           I V   D +YSY  KY   + T  ++PA++   + +++++ A      + C+G++R DF 
Sbjct: 243 IKVNHPDGYYSYTAKYLESSQTDLIIPAQLNNSLEEQLKQAAANIFSYLKCKGMARVDFF 302

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
            +  + ++++ EIN  PG T +S++P++    G ++ +LL
Sbjct: 303 VNDKTEEIYFNEINTLPGFTSISMYPKLWQATGIAYPDLL 342


>gi|54298601|ref|YP_124970.1| D-alanyl-alanine synthetase A [Legionella pneumophila str. Paris]
 gi|148358653|ref|YP_001249860.1| D-alanine-D-alanine ligase A [Legionella pneumophila str. Corby]
 gi|296108257|ref|YP_003619958.1| D-alanine-D-alanine ligase [Legionella pneumophila 2300/99 Alcoy]
 gi|81369792|sp|Q5X1S8|DDL_LEGPA RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|166198489|sp|A5IAW4|DDL_LEGPC RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|53752386|emb|CAH13818.1| D-alanine--D-alanine ligase A [Legionella pneumophila str. Paris]
 gi|148280426|gb|ABQ54514.1| D-alanine-D-alanine ligase A [Legionella pneumophila str. Corby]
 gi|295650159|gb|ADG26006.1| D-alanine-D-alanine ligase [Legionella pneumophila 2300/99 Alcoy]
          Length = 364

 Score =  101 bits (251), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 85/340 (25%), Positives = 158/340 (46%), Gaps = 55/340 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDL------- 53
           + +L GG S E EVSL S  +    L+   + +  I +D+S G    H   DL       
Sbjct: 7   LVLLYGGKSGEHEVSLVSAASVLKHLDSEKYHIIPIAMDKS-GRFHRHDYNDLLACSDKL 65

Query: 54  -------------------------AFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
                                     F V+HG   EDG +Q +LEL  + Y    +L+SA
Sbjct: 66  PVVTEKSTPLEGLLINGRLAVDAEIVFPVVHGPLYEDGCLQGLLELAGVAYVGCDVLSSA 125

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVN---------RFTMDSQHLISPPYVIKPLKGGSSL 139
           + MDK  ++++    G+      L++         +F  +       P  +KP   GSS+
Sbjct: 126 IGMDKDMARRLACINGLKSARYKLLSWHANASERQQFCHEVASEFGWPLFVKPCSLGSSV 185

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA--------SLDVTE 191
           GI   K +    L+   + +  + +++L+E+++ G E+   V+ ++        S+ V E
Sbjct: 186 GIH--KANNMDELNAAVADALRYDEEILVEEFIVGREIELAVLENSIPCGKPRVSM-VGE 242

Query: 192 IAVPKSD-FYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
           I V   D +YSY  KY   + T  ++PA++   + +++++ A      + C+G++R DF 
Sbjct: 243 IKVNHPDGYYSYTAKYLESSQTDLIIPAQLNNSLEEQLKQAAANIFSYLKCKGMARVDFF 302

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
            +  + ++++ EIN  PG T +S++P++    G ++ +LL
Sbjct: 303 VNDKTEEIYFNEINTLPGFTSISMYPKLWQATGVAYPDLL 342


>gi|293401980|ref|ZP_06646120.1| D-alanine--D-alanine ligase [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gi|291304638|gb|EFE45887.1| D-alanine--D-alanine ligase [Erysipelotrichaceae bacterium
           5_2_54FAA]
          Length = 386

 Score =  101 bits (251), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 89/349 (25%), Positives = 151/349 (43%), Gaps = 67/349 (19%)

Query: 1   MAVLMGGISSEREVSLSSGKACASAL------------------EDAGFKVSQIDVDRS- 41
           +A+  GG+S E E+S+ S     +A                    DA F+ +++  D + 
Sbjct: 8   VAIAFGGVSVEHEISILSAMQAIAAFPDAYEIVPLYIAKDGRMYSDASFQKTEVFQDLTK 67

Query: 42  -------VGLVLAHLKP----------------DLAFNVLHGNFGEDGLVQAILELLEIP 78
                  V LV  H +                 D    +LHG  GEDG  Q  L+ L +P
Sbjct: 68  VTQEKYEVQLVREHQRVLMQWKKHHFWKTSRVIDFVLPILHGTNGEDGSFQGFLKTLHVP 127

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-------LVNRFTMDSQHLISPPYVIK 131
           +   G+L+ AL  DK+  K ++   G+P+ P         L   F   +Q L   P +IK
Sbjct: 128 FAQCGVLSGALGQDKVAMKMILQDRGLPLVPWFYWWKQEPLEEAFFAKAQRL-GYPMIIK 186

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI-ELTCGVMG---DASL 187
           P   GSS+GI V++  Q +   +     + + D+++IE+ +  + E+   V+G   DA  
Sbjct: 187 PSNLGSSIGIAVVQNAQELKKAM--EEGFQYDDKIVIEKMITPLREINASVLGNMEDAKC 244

Query: 188 DVTEIAVPKSDFYSYELKYSS-------LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
            V E  V +    S++ KY           +   +PA +  +  +E+   A  + QA+  
Sbjct: 245 SVLEEVVKQDTILSFQDKYEGHAKSKGMAGTNRRVPASLEKEEAQEITSYALASFQALQA 304

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
            G+ R DFL +  ++ ++  EIN  PG    S+   +   +G +F +LL
Sbjct: 305 EGVVRIDFLMNADTKDIYVNEINSIPG----SLAYYLWEASGLTFTKLL 349


>gi|54295449|ref|YP_127864.1| D-alanine--D-alanine ligase A [Legionella pneumophila str. Lens]
 gi|81367752|sp|Q5WTI9|DDL_LEGPL RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|53755281|emb|CAH16775.1| D-alanine--D-alanine ligase A [Legionella pneumophila str. Lens]
 gi|307611491|emb|CBX01162.1| D-alanine--D-alanine ligase A [Legionella pneumophila 130b]
          Length = 364

 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 85/340 (25%), Positives = 158/340 (46%), Gaps = 55/340 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDL------- 53
           + +L GG S E EVSL S  +    L+   + +  I +D+S G    H   DL       
Sbjct: 7   LVLLYGGKSGEHEVSLVSAASVLKHLDSEKYHIIPIAMDKS-GRFHRHDYNDLLACSDKL 65

Query: 54  -------------------------AFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
                                     F V+HG   EDG +Q +LEL  + Y    +L+SA
Sbjct: 66  PVVTEKSTPLEGLLINGRLAVDAEIVFPVVHGPLYEDGCLQGLLELAGVAYVGCDVLSSA 125

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVN---------RFTMDSQHLISPPYVIKPLKGGSSL 139
           + MDK  ++++    G+      L++         +F  +       P  +KP   GSS+
Sbjct: 126 IGMDKDMARRLACINGLKSARYKLLSWHANASERQQFCHEVASEFGWPLFVKPCSLGSSV 185

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA--------SLDVTE 191
           GI   K +    L+   + +  + +++L+E+++ G E+   V+ ++        S+ V E
Sbjct: 186 GIH--KANNMDELNAAVADALRYDEEILVEEFIVGREIELAVLENSIPCGKPRVSM-VGE 242

Query: 192 IAVPKSD-FYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
           I V   D +YSY  KY   + T  ++PA++   + +++++ A      + C+G++R DF 
Sbjct: 243 IKVNHPDGYYSYTAKYLESSQTDLIIPAQLNNSLEEQLKQAAANIFSYLKCKGMARVDFF 302

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
            +  + ++++ EIN  PG T +S++P++    G ++ +LL
Sbjct: 303 VNDKTEEIYFNEINTLPGFTSISMYPKLWQATGIAYPDLL 342


>gi|148978385|ref|ZP_01814879.1| D-alanylalanine synthetase [Vibrionales bacterium SWAT-3]
 gi|145962411|gb|EDK27690.1| D-alanylalanine synthetase [Vibrionales bacterium SWAT-3]
          Length = 331

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 90/330 (27%), Positives = 151/330 (45%), Gaps = 42/330 (12%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDA-GFKVSQIDVDRSVGLVLA-------------- 47
           +L GG SSE EVSL S       L+    F V ++++ +S G  L               
Sbjct: 8   LLCGGGSSEHEVSLVSANYLFDQLKSVEDFNVVRVEI-KSEGWCLDSGELVYLDINNQTL 66

Query: 48  -----HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS 102
                  K D     +HG  GE G +Q++ E+ +IPY   G  AS  S +K+ SK    +
Sbjct: 67  RGDDLESKVDFIVPCIHGFPGETGDIQSLFEMAKIPYLGCGSEASNNSFNKITSKLWYDA 126

Query: 103 CGVPVCPSILVNRFTMDSQHLISPPY------VIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
            G+P  P + ++  T ++    +  +       +K  + GSS+G   +   + +   +  
Sbjct: 127 LGIPNTPYLFLSDNTDEAHAQATQAFEKWGKVFVKAARQGSSVGCYQVNHIEDLSDAI-- 184

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYS--SLN 210
           + ++ + DQ+L+E+ V   EL       D  L ++   E+  P   FYSYE KYS  S +
Sbjct: 185 NKAFTYSDQVLVEKSVVPRELEVAAYEIDGELHISKPGEVIAPNGAFYSYEEKYSADSHS 244

Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270
            T V  + +  +  + +   A      +  R +SR DF F     +++  E+N  PGMTP
Sbjct: 245 ITEVEASNLTDEQRQLIAESARKVFTQMKLRHLSRIDF-FLTQDNEIYLNEVNTFPGMTP 303

Query: 271 VSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           +S+FP+M  + G+ F + L       +C+R
Sbjct: 304 ISMFPKMVEHDGHKFAQFL------ENCVR 327


>gi|156977000|ref|YP_001447906.1| D-alanyl-alanine synthetase A [Vibrio harveyi ATCC BAA-1116]
 gi|166198513|sp|A7N512|DDL_VIBHB RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|156528594|gb|ABU73679.1| hypothetical protein VIBHAR_05785 [Vibrio harveyi ATCC BAA-1116]
          Length = 329

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 89/321 (27%), Positives = 151/321 (47%), Gaps = 40/321 (12%)

Query: 3   VLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDVDRSVGLV-----LAHLKPD---- 52
           +L GG SSE E+SL S       L       V+++++ ++ G V     L +L P+    
Sbjct: 7   LLCGGGSSEHEISLLSANFVEQQLNLIENVSVTRVEI-KNEGWVTNQGELVYLDPNQKKL 65

Query: 53  ----LAFNV------LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS 102
               L+ +V      +HG  GE G +Q++ E+  IPY   G  AS+ S +K+ SK    +
Sbjct: 66  CSDNLSLDVDFIVPCIHGFPGETGDIQSMFEIAGIPYLGCGPEASSNSFNKITSKLWYDA 125

Query: 103 CGVPVCPSILVNRFTMDSQHLISPPY------VIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
            G+P  P + + R    +       +       +K  + GSS+G   +   QS+   +  
Sbjct: 126 IGIPNTPYLFLTRNDEQAHEQALQAFDKWGKVFVKAARQGSSVGCYSVTNKQSVSQAV-- 183

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYSSLNST 212
           + ++ + +Q+L+E+ V   EL       +  L +T   E+  P   FYSY+ KYS+  S+
Sbjct: 184 NDAFGYSEQVLVEKSVKPRELEVAAYEMNGELHITKPGEVIAPDGAFYSYDEKYST--SS 241

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAI----GCRGISRSDFLFDPLSRKVFWLEINVQPGM 268
           H L      ++ +E      +A + +      R +SR DF       +++  E+N  PGM
Sbjct: 242 HSLTEVEAKNLTEEQVEAIRVASETVFKQMNLRHLSRIDFFLTE-DGEIYLNEVNTFPGM 300

Query: 269 TPVSIFPEMAAYAGYSFRELL 289
           TP+S+FP+M    G+ F E L
Sbjct: 301 TPISMFPKMLQNNGHKFHEFL 321


>gi|261212348|ref|ZP_05926633.1| D-alanine--D-alanine ligase [Vibrio sp. RC341]
 gi|260838279|gb|EEX64935.1| D-alanine--D-alanine ligase [Vibrio sp. RC341]
          Length = 335

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 93/318 (29%), Positives = 149/318 (46%), Gaps = 34/318 (10%)

Query: 3   VLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDVDR----------------SVGLV 45
           +L GG SSE E+SL S       L+    F+V ++++ +                S  L 
Sbjct: 8   LLCGGGSSEHEISLVSANYIQQQLQLTPEFEVIRVEMKKEGWFSEQGELVYLDTNSATLN 67

Query: 46  LAHLKPDLAFNV--LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103
                  + F V  +HG  GE G +Q++LEL  IPY   G  ASA S +K+ SK    + 
Sbjct: 68  GERFSSPIDFVVPCIHGFPGETGDIQSMLELAGIPYLGCGPEASANSFNKITSKLWYDAL 127

Query: 104 GVPVCPSILVNRFTMDSQHLISPPY------VIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
            +P  P + + + T DS       +       +K  + GSS+G   +  ++ I   +   
Sbjct: 128 DIPNTPYLFLTQNTSDSIKKAQQAFKEWGSIFVKAARQGSSVGCYKVTTEEQIAPAI--E 185

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYS-SLNST 212
           +++   +Q+L+E+ V   EL       +  L ++   EI  P+  FYSYE KYS S +S 
Sbjct: 186 AAFGFSEQVLVEKAVKPRELEVAAYEMNGQLHISKPGEIIAPEDAFYSYEEKYSASSHSR 245

Query: 213 HVLPAKIPLDIYKE-VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271
            V+ A    +  +E +Q+ A      +  R +SR DF F      ++  E+N  PGMTP+
Sbjct: 246 TVIEADNLTNEQRELIQQCAERVFIHMKLRHLSRIDF-FLTQDDHIYLNEVNTFPGMTPI 304

Query: 272 SIFPEMAAYAGYSFRELL 289
           S+FP+M  + G+ F   L
Sbjct: 305 SMFPKMLEHNGHRFSAFL 322


>gi|269968807|ref|ZP_06182794.1| D-alanine--D-alanine ligase [Vibrio alginolyticus 40B]
 gi|269826584|gb|EEZ80931.1| D-alanine--D-alanine ligase [Vibrio alginolyticus 40B]
          Length = 329

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 91/324 (28%), Positives = 149/324 (45%), Gaps = 46/324 (14%)

Query: 3   VLMGGISSEREVSLSSGKACASAL-------------EDAGFKVSQ-----IDVD-RSVG 43
           +L GG SSE E+SL S       L             ++ G+  +Q     +D++ + + 
Sbjct: 7   LLCGGGSSEHEISLLSANFVEQQLNLIEDVHVTRVEIKNEGWMTNQGELVYLDLNTKQLC 66

Query: 44  LVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103
              ++   D     +HG  GE G +Q++ E+  IPY   G  AS+ S +K+ SK    + 
Sbjct: 67  SSESNQTIDFIVPCIHGFPGETGDIQSLFEIAGIPYLGCGPEASSNSFNKITSKLWYDAI 126

Query: 104 GVPVCPSILVNRFTMDSQHLISPPY------VIKPLKGGSSLGII-VIKKDQSIPLDLLQ 156
           G+P  P + + R   ++       +       +K  + GSS+G   VI+KD+   L    
Sbjct: 127 GIPNTPYLFLTRNDEEAHVQAHKAFEKWGKVFVKAARQGSSVGCYSVIEKDK---LSNAV 183

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYSSLNST 212
           + ++   DQ+L+E+ V   EL       +  L +T   E+  P   FYSY+ KYSS  S+
Sbjct: 184 NDAFGFSDQVLVEKAVKPRELEVAAYEMNGQLHITKPGEVIAPDGAFYSYDEKYSS--SS 241

Query: 213 HVLP-------AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           H L         ++ LD  +      F   + +  R +SR DF       +++  E+N  
Sbjct: 242 HSLTEVEAKNLTQVQLDSIQHASETVF---RQMNLRHLSRIDFFLTE-DDEIYLNEVNTF 297

Query: 266 PGMTPVSIFPEMAAYAGYSFRELL 289
           PGMTP+S+FP+M    G+ F E L
Sbjct: 298 PGMTPISMFPKMLQNNGHKFHEFL 321


>gi|298378695|ref|ZP_06988579.1| LOW QUALITY PROTEIN: D-alanine-D-alanine ligase B [Escherichia coli
           FVEC1302]
 gi|298281029|gb|EFI22530.1| LOW QUALITY PROTEIN: D-alanine-D-alanine ligase B [Escherichia coli
           FVEC1302]
          Length = 215

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 66/212 (31%), Positives = 108/212 (50%), Gaps = 13/212 (6%)

Query: 92  DKMRSKQVVSSCGVPVCPSILVNRFTM-----DSQ----HLISPPYVIKPLKGGSSLGII 142
           DK+RSK +    G+PV P + + R        D Q      +  P ++KP + GSS+G+ 
Sbjct: 5   DKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMS 64

Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSY 202
            +  + ++  D L+ + + H +++LIE+++ G E T  ++G+  L    I  P   FY Y
Sbjct: 65  KVVAENALQ-DALRLA-FQHDEEVLIEKWLSGPEFTVAILGEEILPSIRIQ-PSGTFYDY 121

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
           E KY S  + +  PA +       +Q L   A   +GC+G  R D + D    + + LE 
Sbjct: 122 EAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLDS-DGQFYLLEA 180

Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           N  PGMT  S+ P  A  AG SF +L++ ++E
Sbjct: 181 NTSPGMTSHSLVPMAARQAGMSFSQLVVRILE 212


>gi|303234404|ref|ZP_07321043.1| D-ala D-ala ligase N-terminal domain protein [Finegoldia magna
           BVS033A4]
 gi|302494520|gb|EFL54287.1| D-ala D-ala ligase N-terminal domain protein [Finegoldia magna
           BVS033A4]
          Length = 350

 Score =  100 bits (249), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 77/315 (24%), Positives = 145/315 (46%), Gaps = 49/315 (15%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH-------------L 49
           VL GG S+E EVS++S +   + L    + V+ I V R+   ++               L
Sbjct: 7   VLYGGPSTEHEVSITSARTLINNLSKEKYNVNAIFVRRNKKFIMKENITEEIKSDEELIL 66

Query: 50  KPDLA-------------------FNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
             DL+                   F  +HG++GEDG +Q  +++L++P+    +L SAL 
Sbjct: 67  DTDLSVIESVSECIRKINPENTVIFPAIHGSYGEDGTIQGFIKVLDLPFVGCNVLGSALC 126

Query: 91  MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIKPLKGGSSLGIIVI 144
           MDK  +  +     +P    +++ +   D  +L       S    +KP   GSS+G++  
Sbjct: 127 MDKGYTNDIFELNKIPQAKYVVLCK--NDEYNLKEIFEKTSKAVYVKPCNAGSSVGVMRA 184

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK---SDFYS 201
           + ++   L+    +++ +  ++L+E+ + G EL   VMG+ +   +   V +    +F+ 
Sbjct: 185 ETEEE--LEKAIQNAFQYDRRILVEEEIIGPELQIAVMGNDNPVASRPGVYQIHDVEFFD 242

Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL- 260
           Y+ KY+   +  + P  +   +  + + LA   ++ +   G SR D     +     W+ 
Sbjct: 243 YDAKYNDSKTEMLTPFPMDEKLELKARHLAEKVYKLMSLSGFSRVDMF---VKDNELWVN 299

Query: 261 EINVQPGMTPVSIFP 275
           EIN  PG+TP S+FP
Sbjct: 300 EINTVPGLTPHSMFP 314


>gi|169823960|ref|YP_001691571.1| D-alanine-D-alanine ligase [Finegoldia magna ATCC 29328]
 gi|190359129|sp|B0S093|DDL_FINM2 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|167830765|dbj|BAG07681.1| D-alanine-D-alanine ligase [Finegoldia magna ATCC 29328]
          Length = 350

 Score =  100 bits (249), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 77/315 (24%), Positives = 145/315 (46%), Gaps = 49/315 (15%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH-------------L 49
           VL GG S+E EVS++S +   + L    + V+ I V R+   ++               L
Sbjct: 7   VLYGGPSTEHEVSITSARTLINNLSKEKYNVNAIFVRRNKKFIMKENITEEIKSDEELIL 66

Query: 50  KPDLA-------------------FNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
             DL+                   F  +HG++GEDG +Q  +++L++P+    +L SAL 
Sbjct: 67  DTDLSVIESVSECIRKINPENTVIFPAIHGSYGEDGTIQGFIKVLDLPFVGCNVLGSALC 126

Query: 91  MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIKPLKGGSSLGIIVI 144
           MDK  +  +     +P    +++ +   D  +L       S    +KP   GSS+G++  
Sbjct: 127 MDKGYTNDIFELNKIPQAKYVVLCK--NDDYNLKEIFEKTSKAVYVKPCNAGSSVGVMRA 184

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK---SDFYS 201
           + ++   L+    +++ +  ++L+E+ + G EL   VMG+ +   +   V +    +F+ 
Sbjct: 185 ETEEE--LEKAIQNAFQYDRRILVEEEIIGPELQIAVMGNDNPVASRPGVYQIHDVEFFD 242

Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL- 260
           Y+ KY+   +  + P  +   +  + + LA   ++ +   G SR D     +     W+ 
Sbjct: 243 YDAKYNDSKTEMLTPFPMDEKLELKARHLAEKVYKLMSLSGFSRVDMF---VKDNELWVN 299

Query: 261 EINVQPGMTPVSIFP 275
           EIN  PG+TP S+FP
Sbjct: 300 EINTVPGLTPHSMFP 314


>gi|260773705|ref|ZP_05882620.1| D-alanine--D-alanine ligase [Vibrio metschnikovii CIP 69.14]
 gi|260610666|gb|EEX35870.1| D-alanine--D-alanine ligase [Vibrio metschnikovii CIP 69.14]
          Length = 334

 Score =  100 bits (249), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 95/318 (29%), Positives = 140/318 (44%), Gaps = 34/318 (10%)

Query: 3   VLMGGISSEREVSLSSGKACASAL-------------EDAGFKVSQIDV----DRSVGLV 45
           +L GG SSE E+SL S       L             + AG+     D+      S  L 
Sbjct: 8   LLCGGGSSEHEISLVSADYLQQQLTLTPSFDVIRVEMKPAGWFTESGDMVYLDTNSASLN 67

Query: 46  LAHLKPDLAFNV--LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103
             H    + F V  +HG  GE G +Q++LEL  IPY   G  AS+ S +K+ SK    + 
Sbjct: 68  SEHGSHRIDFVVPCIHGYPGETGDIQSMLELAGIPYLGCGPEASSNSFNKITSKLWYDAL 127

Query: 104 GVPVCPSILVNRFTMDSQHLISPPY------VIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
           G+P  P + +     ++       +       IK  + GSS+G   +   Q I   +   
Sbjct: 128 GIPNTPYLFLTENNDEALCKAQQAFDKWGAVFIKAARQGSSVGCYKVTDKQQIAKAI--D 185

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYS--SLNS 211
            ++   DQ+L+EQ V   EL          L +T   EI  P   FYSYE KYS  S + 
Sbjct: 186 DAFTFSDQVLVEQAVKPRELEVAAYELGGKLHITQPGEIIAPDDAFYSYEEKYSANSHSM 245

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271
           T V    I  +    ++R A      +  R ++R DF       +++  E+N  PGMTP+
Sbjct: 246 TKVTADNITAEQRDLIKRYAEKVFVHMKLRHLARIDFFLTSQG-EIYLNEVNTFPGMTPI 304

Query: 272 SIFPEMAAYAGYSFRELL 289
           S+FP+M  + G+SF   L
Sbjct: 305 SMFPKMLEHHGHSFSVFL 322


>gi|148256670|ref|YP_001241255.1| D-alanyl-alanine synthetase A [Bradyrhizobium sp. BTAi1]
 gi|190359115|sp|A5EMF5|DDL_BRASB RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|146408843|gb|ABQ37349.1| D-alanine--D-alanine ligase [Bradyrhizobium sp. BTAi1]
          Length = 367

 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 74/242 (30%), Positives = 125/242 (51%), Gaps = 23/242 (9%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+ F VLHG  GEDG +Q  LEL ++ Y  + ++ SA +MDK  +K+++   G+P+ P +
Sbjct: 100 DVIFPVLHGPNGEDGTMQGALELADVAYVGARVMGSAAAMDKDVAKRLLRDAGLPIVPFV 159

Query: 112 LVNRFT----MDSQHLIS-PPYVIKPLKGGSSLGIIVIKKDQ--SIPLDLLQSSSWNHGD 164
            +         D+ H +      IKP   GSS+GI   +  Q  +   DL    +     
Sbjct: 160 TMTAAAPVSYEDAVHAVGCSELFIKPANLGSSVGISKARTPQEFAAACDL----ALRFDG 215

Query: 165 QLLIEQYVDGI-ELTCGVM--GDASLDVTEIA--VPKSD--FYSYELKYS--SLNSTHVL 215
           ++LIE+ +  + E+ C V+   D  +  +E+   VP S   FYSY  KY+  S  S HV 
Sbjct: 216 KILIERCISPVREIECAVLEHADGEVKASELGEIVPASSHGFYSYAAKYTDASGASLHV- 274

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275
           PA++   + + ++++A      + C  ++R DF       +V+  E+N  PG T +S++P
Sbjct: 275 PAQVEPGLAQRIRKMATEVFGVLCCESLARVDFFVH--GEEVYVNEVNTLPGFTNISMYP 332

Query: 276 EM 277
           +M
Sbjct: 333 KM 334


>gi|313835191|gb|EFS72905.1| D-alanine--D-alanine ligase [Propionibacterium acnes HL037PA2]
 gi|314929163|gb|EFS92994.1| D-alanine--D-alanine ligase [Propionibacterium acnes HL044PA1]
 gi|314970887|gb|EFT14985.1| D-alanine--D-alanine ligase [Propionibacterium acnes HL037PA3]
 gi|328905772|gb|EGG25548.1| D-alanine--D-alanine ligase B [Propionibacterium sp. P08]
          Length = 255

 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 72/253 (28%), Positives = 121/253 (47%), Gaps = 18/253 (7%)

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS------ 110
           +LHG  GE+G +  +L+L+ IPY  SG  A  +S DK  + +++++ GV           
Sbjct: 1   MLHGGLGENGALLEVLQLMGIPYVGSGPAACRISYDKSIASRIMTAVGVATPQQVALPHD 60

Query: 111 ILVNRFTMDSQHLISP----PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQL 166
           I     T    H I+     P ++KP +GGSSLG+  +    ++P  +  ++++ + D +
Sbjct: 61  IFRELGTRPVIHSITKKFGLPIIVKPARGGSSLGVTRVDDIDALPQAI--ANAYAYDDMV 118

Query: 167 LIEQYVDGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD 222
           +IE+++ G EL  G++    G   L   E+  P    Y Y   Y+   +    PA+I  +
Sbjct: 119 VIEEFIVGTELAIGMITTSEGTQVLPAVEVR-PVGGVYDYSAMYTGGETRLTAPAEITDE 177

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAG 282
           + +    +A +    +   GISR D + D   R VF LE    PGMT  S+ P     A 
Sbjct: 178 VAQAATEMARVVQGELDFFGISRVDAIVDGSGRPVF-LEAGAAPGMTATSLVPVAMKAAD 236

Query: 283 YSFRELLLWMVED 295
               E+   +V+D
Sbjct: 237 LDLGEVCSRLVDD 249


>gi|302379949|ref|ZP_07268428.1| D-ala D-ala ligase N-terminal domain protein [Finegoldia magna
           ACS-171-V-Col3]
 gi|302312175|gb|EFK94177.1| D-ala D-ala ligase N-terminal domain protein [Finegoldia magna
           ACS-171-V-Col3]
          Length = 350

 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 77/315 (24%), Positives = 144/315 (45%), Gaps = 49/315 (15%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH-------------L 49
           VL GG S+E EVS++S +   + L    + V+ I V R    ++               L
Sbjct: 7   VLYGGPSTEHEVSITSARTLINNLSKEKYNVNAIFVRRDKKFIMKENITEEIKSDEELIL 66

Query: 50  KPDLA-------------------FNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
             DL+                   F  +HG++GEDG +Q  +++L++P+    +L SAL 
Sbjct: 67  DTDLSVIESVSDCISKINPENTVIFPAIHGSYGEDGTIQGFIKVLDLPFVGCNVLGSALC 126

Query: 91  MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIKPLKGGSSLGIIVI 144
           MDK  +  +     +P    +++ +   D  +L       S    +KP   GSS+G++  
Sbjct: 127 MDKGYTNDIFELNKIPQAKYVVLCK--NDDYNLKEIFEKTSKAVYVKPCNAGSSVGVMRA 184

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK---SDFYS 201
           + ++   L+    +++ +  ++L+E+ + G EL   VMG+ +   +   V +    +F+ 
Sbjct: 185 ETEEE--LEKAIQNAFQYDRRILVEEEIIGPELQIAVMGNDNPVASRPGVYQIHDVEFFD 242

Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL- 260
           Y+ KY+   +  + P  +   +  + + LA   ++ +   G SR D     +     W+ 
Sbjct: 243 YDAKYNDSKTEMLTPFPMDEKLELKARHLAEKVYKLMSLSGFSRVDMF---VKDNELWVN 299

Query: 261 EINVQPGMTPVSIFP 275
           EIN  PG+TP S+FP
Sbjct: 300 EINTVPGLTPHSMFP 314


>gi|257792714|ref|YP_003183320.1| D-alanine--D-alanine ligase [Eggerthella lenta DSM 2243]
 gi|325831132|ref|ZP_08164456.1| D-ala D-ala ligase N-terminal domain protein [Eggerthella sp. HGA1]
 gi|257476611|gb|ACV56931.1| D-alanine--D-alanine ligase [Eggerthella lenta DSM 2243]
 gi|325487053|gb|EGC89499.1| D-ala D-ala ligase N-terminal domain protein [Eggerthella sp. HGA1]
          Length = 328

 Score =  100 bits (248), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 91/321 (28%), Positives = 144/321 (44%), Gaps = 36/321 (11%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+ERE+SL+S K   +ALE+AG +   +D    +   L   +PD+ FN LHG
Sbjct: 3   VAVLTGGSSTERELSLASAKNVCAALEEAGHRTVLLDASSDLVSALRVERPDVCFNALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDK------------MRSKQVVSSCGVPVC 108
             GEDG VQ++LE + +P+  S       + DK            +   +  +S    VC
Sbjct: 63  KLGEDGTVQSLLEFVGVPFVGSPSSVCRRAWDKSSLGSEMAAYRAITGDEPTASWPQGVC 122

Query: 109 PSI-------LVNRFTMDSQHLISP-PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160
            +            F +    +I   P  +KP  G S+ G  V + D    L    S + 
Sbjct: 123 IAREAFESMGAATAFDLVEDRVIGGYPVAVKPAHGVSASG--VRRVDSVDQLGEAVSDAL 180

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKS--DFYSYELKYSSLNSTHV 214
           +  D ++IEQ++DG+E+T  V+G      +L   EI   +   D  +     +      V
Sbjct: 181 SFDDAVIIEQWIDGVEVTVPVLGSGWDAYALPPVEIVAKEGFCDTVACRTPGAVELFAPV 240

Query: 215 LPAKIPLD------IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268
            PA +  D      I  E++R A    +A   R ++R D ++D    +V  LE++V P +
Sbjct: 241 RPASLSNDEADAQAIRAEIERAALEVCRAYQVRDLARVDLVWDGAQARV--LEVDVSPSL 298

Query: 269 TPVSIFPEMAAYAGYSFRELL 289
              S F      +G S   +L
Sbjct: 299 AESSPFSLACEASGLSLSGVL 319


>gi|218676510|ref|YP_002395329.1| D-alanyl-alanine synthetase A [Vibrio splendidus LGP32]
 gi|254767747|sp|B7VRZ7|DDL_VIBSL RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|218324778|emb|CAV26458.1| D-alanine--D-alanine ligase [Vibrio splendidus LGP32]
          Length = 331

 Score = 99.8 bits (247), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 88/331 (26%), Positives = 149/331 (45%), Gaps = 44/331 (13%)

Query: 3   VLMGGISSEREVSLSSGKACASALED-AGFKVSQIDV------------------DRSVG 43
           +L GG SSE EVS+ S       L     F V ++++                  D+++ 
Sbjct: 8   LLCGGGSSEHEVSIVSANYLFEQLNSVTDFNVVRVEIKNEGWCLDSGELVYLDINDQTLR 67

Query: 44  LVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103
                 K D     +HG  GE G +Q++ E+ +IPY   G  AS  S +K+ SK    + 
Sbjct: 68  GDNLESKVDFIVPCIHGFPGETGDIQSLFEMAKIPYLGCGSEASNNSFNKITSKLWYDAL 127

Query: 104 GVPVCPSILVNRFTMDSQHLISPPY------VIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
           G+P  P + ++  T  +    +  +       +K  + GSS+G   + + + +   +  +
Sbjct: 128 GIPNTPYLFLSDNTEQAHAQATQAFESWGKVFVKAARQGSSVGCYQVNQVEELSEAI--N 185

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYSSLNSTH 213
            ++   DQ+LIE+ V   EL       D  L ++   E+  P   FYSYE KYS+   +H
Sbjct: 186 KAFTFSDQVLIEKSVVPRELEVAAYEIDGELQISKPGEVIAPNGAFYSYEEKYSA--DSH 243

Query: 214 VLPAKIPLDIYKEVQRL----AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
            +      ++  E + L    A      +  R +SR DF F     +++  E+N  PGMT
Sbjct: 244 SITEVEATNLTDEQRELIADSARKVFTQMKLRHLSRIDF-FLTQDNEIYLNEVNTFPGMT 302

Query: 270 PVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           P+S+FP+M  + G+ F + L       +C+R
Sbjct: 303 PISMFPKMVEHDGHKFSQFL------ENCVR 327


>gi|90577824|ref|ZP_01233635.1| D-alanylalanine synthetase [Vibrio angustum S14]
 gi|90440910|gb|EAS66090.1| D-alanylalanine synthetase [Vibrio angustum S14]
          Length = 331

 Score = 99.8 bits (247), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 83/326 (25%), Positives = 151/326 (46%), Gaps = 36/326 (11%)

Query: 3   VLMGGISSEREVSLSSGKACASALE-------------------DAGFKVSQIDVDRSVG 43
           +L GG S+E EVSL S       L+                   DA  +  ++++D+++ 
Sbjct: 8   LLCGGGSAEHEVSLVSANFIEEQLKTINGVTYTRVEMTKNDGWLDAENRSCELNLDKTLI 67

Query: 44  LVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103
           +    +  D     +HG  GE G +Q++L +  +P+   G  AS    +K+ +K    + 
Sbjct: 68  VGDQEVVIDYVIPCVHGFPGETGDLQSLLTIAGLPFLGCGAEASTNCFNKITTKLWFDAL 127

Query: 104 GVPVCPSILVNRFTMDSQHLISPPY------VIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
            +P  P + ++    ++       +       +K    GSS+G   +  +Q +   +  +
Sbjct: 128 NIPNTPYVFLSENNQEAHQEARDAFSKWGKVFVKAACQGSSVGCYCVTTEQELTDAV--N 185

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVM--GDASLDVT---EIAVPKSDFYSYELKYS--SLN 210
           +++ + DQ+LIE+ +   EL       GD  L +T   E++ P   FYSYE KYS  S++
Sbjct: 186 NAFGYSDQVLIEKAIRPRELEIAAYQYGD-ELVITKPGEVSCPTDKFYSYEEKYSADSVS 244

Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270
           +T V    +  D  + ++  A  A   +  + +SR DF       ++   EIN  PGMTP
Sbjct: 245 TTMVEAENLTEDQIEAIRTYARKAFVQMKLKDLSRIDFFLSE-DNEILLNEINTFPGMTP 303

Query: 271 VSIFPEMAAYAGYSFRELLLWMVEDA 296
           +S+FP+M  + G+ F E +   ++ A
Sbjct: 304 ISMFPKMLEHHGHKFAEFIEQAIKSA 329


>gi|167647366|ref|YP_001685029.1| D-alanine--D-alanine ligase [Caulobacter sp. K31]
 gi|167349796|gb|ABZ72531.1| D-alanine--D-alanine ligase [Caulobacter sp. K31]
          Length = 331

 Score = 99.8 bits (247), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 97/321 (30%), Positives = 145/321 (45%), Gaps = 44/321 (13%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR----SVGLVLAHLKP------- 51
           +L GG S ER VS++S KA A+AL DA       D D+    S  ++ AH +P       
Sbjct: 5   ILFGGTSRERLVSVASAKALATALPDADLWFWAPD-DKVYVASDAVLQAHARPFEIDLPT 63

Query: 52  --------DLAFNV-----------LHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
                   + A +            +HG   E+G + A+ E   + +T S   +S L+ D
Sbjct: 64  EGAAIGGIEAALDKAKAEERVLVLGMHGGAAENGDLAALCEARGVAFTGSDSRSSRLAFD 123

Query: 93  KMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152
           K+ +K  V+  GV V PS +       +        V KP+  GSS G+I +      P 
Sbjct: 124 KIATKAAVAKAGV-VAPSTVELADAEAALAKYGK-LVAKPVADGSSYGLIFVNG----PA 177

Query: 153 DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSS 208
           DL   ++    +  +IE +V G E TCGV+       +L   EI  P    + Y  KY S
Sbjct: 178 DLETLAAAAGREAYVIEPFVAGAEATCGVLEQDGKVFALPPVEIR-PADGAFDYVGKYLS 236

Query: 209 LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268
             +  + PA     +   +Q  A  AH+ +G  G SRSDF+  P      +LEIN  PGM
Sbjct: 237 KTTEEICPATFAPAVNAAMQEAALKAHKTVGAGGYSRSDFIVTP--NGPIFLEINTLPGM 294

Query: 269 TPVSIFPEMAAYAGYSFRELL 289
           T  S++P+     G +F++ L
Sbjct: 295 TAASLYPKSLKAQGIAFKDFL 315


>gi|256786060|ref|ZP_05524491.1| D-alanine--D-alanine ligase B [Streptomyces lividans TK24]
          Length = 364

 Score = 99.4 bits (246), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 87/323 (26%), Positives = 156/323 (48%), Gaps = 46/323 (14%)

Query: 1   MAVLMGGISSERE-------VSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDL 53
           +A++ G +S+E         V   S  A A ALE+ G +   ++       ++  ++ D+
Sbjct: 32  VALVNGPVSAEDRLYHSKCPVEQRSVTALAEALEEIGARWKVLNPCEP-DFIMELVEYDV 90

Query: 54  AFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV------ 107
           A + LHG +GEDG +Q +L+ L +PY  SG+ ASA++ DK+  K+V+ + GVP       
Sbjct: 91  ALSNLHGPYGEDGRLQGLLDYLRVPYCGSGVGASAVAADKILCKRVMLTLGVPTPGWHVW 150

Query: 108 --CPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
              P     R  M           +KP  GGSS+G+ +++    +P   L  ++ +    
Sbjct: 151 SGGPVAWYGRTIM-----------VKPPFGGSSVGMSLVRDPADLP-GALADAAGDGCAP 198

Query: 166 LLIEQYVDGIELTCGVM---GDASLDVTEIAV--PKSDFYSYELKYS-------SLNSTH 213
           +LIE+YV G  +T G++   G +++    +     ++DFY  + K         ++ + +
Sbjct: 199 VLIEEYVTGTPMTVGLLELPGGSAVVFPPLTTEATEADFYDADTKLDVDLRGAVTVRAAN 258

Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273
           + PA +      ++   A      +G RG +R DF+      + + LE+N  PGM+  S 
Sbjct: 259 LAPAAL-----DKITAHARTLWNGLGLRGSARIDFILTE-DNEPYVLEVNTTPGMSRDSN 312

Query: 274 FPEMAAYAGYSFRELLLWMVEDA 296
           F   AA  G +  E++L M+ +A
Sbjct: 313 FAVGAAMVGLTHTEVVLAMLHEA 335


>gi|330448329|ref|ZP_08311977.1| D-alanine--D-alanine ligase family protein [Photobacterium
           leiognathi subsp. mandapamensis svers.1.1.]
 gi|328492520|dbj|GAA06474.1| D-alanine--D-alanine ligase family protein [Photobacterium
           leiognathi subsp. mandapamensis svers.1.1.]
          Length = 331

 Score = 99.4 bits (246), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 82/325 (25%), Positives = 151/325 (46%), Gaps = 34/325 (10%)

Query: 3   VLMGGISSEREVSLSSGKACASALED-AGFKVSQIDVDRSVGLVLAHLKP---------- 51
           +L GG S+E EVSL S       L+   G   +++++ ++ G + +  +P          
Sbjct: 8   LLCGGGSAEHEVSLVSANFIEEQLKTINGVTYTRVEMTKNDGWLDSENRPCELNLDKTLI 67

Query: 52  --------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103
                   D     +HG  GE G +Q++L L  +P+   G  AS    +K+ +K    + 
Sbjct: 68  VGDQEVAIDYVIPCVHGFPGETGDLQSLLTLAGLPFLGCGAEASTNCFNKITTKLWFDAL 127

Query: 104 GVPVCPSILVNRFTMDSQHLISPPY------VIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
            +P  P + ++  + ++       +       +K    GSS+G   +  +Q +   +  +
Sbjct: 128 NIPNTPYVFLSENSQEAHQEALEAFKKWGKVFVKAACQGSSVGCYCVTTEQELTDAV--N 185

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYSS--LNS 211
           +++ + DQ+LIE+ +   EL          L +T   E++ P   FYSYE KYSS  L++
Sbjct: 186 NAFGYSDQVLIEKAIRPRELEIAAYQYGEELVITKPGEVSCPTDKFYSYEEKYSSDSLST 245

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271
           T V    +  +  + ++  A  A   +  + +SR DF       ++   EIN  PGMTP+
Sbjct: 246 TKVEADNLTEEQVEAIRTYARKAFVQMKLKDLSRIDFFLSE-DDEILLNEINTFPGMTPI 304

Query: 272 SIFPEMAAYAGYSFRELLLWMVEDA 296
           S+FP+M  + G+ F E +   +++A
Sbjct: 305 SMFPKMLEHHGHKFAEFIEQAIKNA 329


>gi|116490730|ref|YP_810274.1| D-alanine--D-alanine ligase [Oenococcus oeni PSU-1]
 gi|290890150|ref|ZP_06553232.1| hypothetical protein AWRIB429_0622 [Oenococcus oeni AWRIB429]
 gi|122277086|sp|Q04G13|DDL_OENOB RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|116091455|gb|ABJ56609.1| D-alanine--D-alanine ligase [Oenococcus oeni PSU-1]
 gi|290480194|gb|EFD88836.1| hypothetical protein AWRIB429_0622 [Oenococcus oeni AWRIB429]
          Length = 377

 Score = 99.4 bits (246), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 73/252 (28%), Positives = 130/252 (51%), Gaps = 18/252 (7%)

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV 105
           + +LK D+ F  +HGN GEDG +  +  L+ IPY  SG+ A A+S DK+ +K++++  G+
Sbjct: 86  IRNLKLDVLFPSVHGNLGEDGTLAGLFRLMNIPYVGSGLRAHAISFDKVITKELMTVNGI 145

Query: 106 PVCPSILV-----NRFTMDS-QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
                I++     N+   DS    +     +K    GSS+G+  +   +     L    S
Sbjct: 146 RNTKYIVIFQNDKNKPDWDSVSKQLGEVVFVKAANQGSSVGVSRVTNAEEYENAL--RDS 203

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIA---VPKSD----FYSYELKY-SSLN 210
           + + ++LL+E+ V+   EL  G++G+  +  + I     P  D    ++ Y+ K+  +  
Sbjct: 204 FQYDEKLLVEKAVESPTELEIGLLGNDRVITSPIGAHWAPGQDHGSGWFDYKNKFVDNSK 263

Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270
             + +PAKI     KE++ +A  A++ +G +G +R DFL      ++F  E N  PG T 
Sbjct: 264 MKYQIPAKISPAKSKELENMAVKAYKVLGIKGFARIDFLMSK-DGEIFLSEPNTLPGNTN 322

Query: 271 VSIFPEMAAYAG 282
           +S+FP +   AG
Sbjct: 323 MSLFPILFEAAG 334


>gi|119943830|ref|YP_941510.1| D-alanine--D-alanine ligase [Psychromonas ingrahamii 37]
 gi|119862434|gb|ABM01911.1| D-alanine--D-alanine ligase [Psychromonas ingrahamii 37]
          Length = 380

 Score = 99.4 bits (246), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 70/263 (26%), Positives = 127/263 (48%), Gaps = 18/263 (6%)

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV 105
           +A  K D+ F VLHG  GEDG +Q +LE + +PY   G+ ASA  +DK  +K +     +
Sbjct: 99  IAGKKFDIVFPVLHGLNGEDGTIQGMLEFMGVPYVGCGVSASAFCIDKEATKVICQVNDI 158

Query: 106 PVCPSILVNRFTM---------DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
           PV     V ++           D Q  ++ P+ +KP + GSS+GI   + + ++ L    
Sbjct: 159 PVMDYTAVKKYEWENSTENIINDIQKKMNYPFYVKPARLGSSIGI--SRAENTVELKTSL 216

Query: 157 SSSWNHGDQLLIEQYVDG-IELTCGVMG---DASLD-VTEIAVPKSDFYSYELKYSSLNS 211
             ++ +  ++++EQ V+   ELT GVMG     SL  + E +   + +++++ KY     
Sbjct: 217 KDAFKYDCKVVVEQGVESPRELTVGVMGIDDQVSLSAIGEFSRGSNLYFNFDSKYGKTGH 276

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271
             ++PA +  +I + +++ + L  +     G +R D+       KV+  EIN  PG    
Sbjct: 277 KGLVPAPLEENIQEIIEKYSHLIFKKFELSGFARIDYFL--CGDKVYLNEINTMPGFETG 334

Query: 272 SIFPEMAAYAGYSFRELLLWMVE 294
             F  +    G   ++ +   +E
Sbjct: 335 DTFMRIWQNKGVDMQKFIDKAIE 357


>gi|289769956|ref|ZP_06529334.1| D-alanine-D-alanine ligase B [Streptomyces lividans TK24]
 gi|289700155|gb|EFD67584.1| D-alanine-D-alanine ligase B [Streptomyces lividans TK24]
          Length = 326

 Score = 99.4 bits (246), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 84/307 (27%), Positives = 149/307 (48%), Gaps = 39/307 (12%)

Query: 10  SEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ 69
           S+  V   S  A A ALE+ G +   ++       ++  ++ D+A + LHG +GEDG +Q
Sbjct: 10  SKCPVEQRSVTALAEALEEIGARWKVLNPCEP-DFIMELVEYDVALSNLHGPYGEDGRLQ 68

Query: 70  AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV--------CPSILVNRFTMDSQ 121
            +L+ L +PY  SG+ ASA++ DK+  K+V+ + GVP          P     R  M   
Sbjct: 69  GLLDYLRVPYCGSGVGASAVAADKILCKRVMLTLGVPTPGWHVWSGGPVAWYGRTIM--- 125

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
                   +KP  GGSS+G+ +++    +P   L  ++ +    +LIE+YV G  +T G+
Sbjct: 126 --------VKPPFGGSSVGMSLVRDPADLP-GALADAAGDGCAPVLIEEYVTGTPMTVGL 176

Query: 182 M---GDASLDVTEIAV--PKSDFYSYELKYS-------SLNSTHVLPAKIPLDIYKEVQR 229
           +   G +++    +     ++DFY  + K         ++ + ++ PA +      ++  
Sbjct: 177 LELPGGSAVVFPPLTTEATEADFYDADTKLDVDLRGAVTVRAANLAPAAL-----DKITA 231

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
            A      +G RG +R DF+      + + LE+N  PGM+  S F   AA  G +  E++
Sbjct: 232 HARTLWNGLGLRGSARIDFILTE-DNEPYVLEVNTTPGMSRDSNFAVGAAMVGLTHTEVV 290

Query: 290 LWMVEDA 296
           L M+ +A
Sbjct: 291 LAMLHEA 297


>gi|118586551|ref|ZP_01543993.1| peptidoglycan biosynthesis D-alanyl-D-alanine ligase A [Oenococcus
           oeni ATCC BAA-1163]
 gi|118432992|gb|EAV39716.1| peptidoglycan biosynthesis D-alanyl-D-alanine ligase A [Oenococcus
           oeni ATCC BAA-1163]
          Length = 377

 Score = 99.4 bits (246), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 73/252 (28%), Positives = 130/252 (51%), Gaps = 18/252 (7%)

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV 105
           + +LK D+ F  +HGN GEDG +  +  L+ IPY  SG+ A A+S DK+ +K++++  G+
Sbjct: 86  IRNLKLDVLFPSVHGNLGEDGTLAGLFRLMNIPYVGSGLRAHAISFDKVITKELMTVNGI 145

Query: 106 PVCPSILV-----NRFTMDS-QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
                I++     N+   DS    +     +K    GSS+G+  +   +     L    S
Sbjct: 146 RNTKYIVIFQNDKNKPDWDSVSKQLGEVVFVKAANQGSSVGVSRVANAEEYENAL--RDS 203

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIA---VPKSD----FYSYELKY-SSLN 210
           + + ++LL+E+ V+   EL  G++G+  +  + I     P  D    ++ Y+ K+  +  
Sbjct: 204 FQYDEKLLVEKAVESPTELEIGLLGNDRVITSPIGAHWAPGQDHGSGWFDYKNKFVDNSK 263

Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270
             + +PAKI     KE++ +A  A++ +G +G +R DFL      ++F  E N  PG T 
Sbjct: 264 MKYQIPAKISPAKSKELENMAVKAYKVLGIKGFARIDFLMSK-DGEIFLSEPNTLPGNTN 322

Query: 271 VSIFPEMAAYAG 282
           +S+FP +   AG
Sbjct: 323 MSLFPILFEAAG 334


>gi|89076629|ref|ZP_01162932.1| D-alanylalanine synthetase [Photobacterium sp. SKA34]
 gi|89047711|gb|EAR53313.1| D-alanylalanine synthetase [Photobacterium sp. SKA34]
          Length = 331

 Score = 99.0 bits (245), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 83/326 (25%), Positives = 153/326 (46%), Gaps = 36/326 (11%)

Query: 3   VLMGGISSEREVSLSSGKACASALE-------------------DAGFKVSQIDVDRSVG 43
           +L GG S+E EVSL S       L+                   DA  +  ++++D+++ 
Sbjct: 8   LLCGGGSAEHEVSLVSANFIEEQLKTISGVTYTRVEMTKNDGWLDAENRSCELNLDKTLI 67

Query: 44  LVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103
           L    +  D     +HG  GE G +Q++L +  +P+   G  AS    +K+ +K    + 
Sbjct: 68  LGDQEVVIDYVIPCVHGFPGETGDLQSLLTIAGLPFLGCGAEASTNCFNKITTKLWFDAL 127

Query: 104 GVPVCPSILVNRFTMDSQHLISPPY------VIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
            +P  P + ++    ++    S  +       +K    GSS+G   +  +Q +   +  +
Sbjct: 128 NIPNTPYVFLSENNQEAHKEASEAFKKWGKVFVKAACQGSSVGCYSVMSEQELTEAV--N 185

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVM--GDASLDVT---EIAVPKSDFYSYELKYS--SLN 210
           +++ + DQ+LIE+ +   EL       GD  L +T   E++ P   FYSYE KYS  S++
Sbjct: 186 NAFGYSDQVLIEKAIRPRELEIAAYQYGD-ELVITKPGEVSCPTDKFYSYEEKYSADSVS 244

Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270
           +T V    +  +  + ++  A  A   +  + +SR DF       ++   EIN  PGMTP
Sbjct: 245 TTMVEAENLTEEQVEAIRTYARKAFVQMKLKDLSRIDFFLSE-DNEILLNEINTFPGMTP 303

Query: 271 VSIFPEMAAYAGYSFRELLLWMVEDA 296
           +S+FP+M  + G +F + +   +++A
Sbjct: 304 ISMFPKMLEHNGQTFADFIEQAIKNA 329


>gi|2231985|gb|AAB62174.1| vancomycin resistance protein B [Enterococcus faecium]
          Length = 267

 Score = 99.0 bits (245), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 63/206 (30%), Positives = 104/206 (50%), Gaps = 9/206 (4%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+AF VLHG  GEDG +Q +  L  IPY    I +SA  MDK  +  +  + G+ V    
Sbjct: 57  DVAFPVLHGKCGEDGAIQGLFVLSGIPYVGCDIQSSAACMDKSLAYILTKNAGIAVPEFQ 116

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
           ++++        ++ P  +KP + GSS G  V K + +  L+    ++  +  ++LIEQ 
Sbjct: 117 MIDKGDKPEAGALTYPVFVKPARSGSSFG--VTKVNGTEELNAAIEAAGQYDGKILIEQA 174

Query: 172 VDGIELTCGVMGDAS----LDVTEIAVPKSDFYSY---ELKYSSLNSTHVLPAKIPLDIY 224
           + G E+ C VMG+       +V +I +    F  +   E +  S N+   +PA IP++  
Sbjct: 175 ISGCEVGCAVMGNEDDLIVGEVDQIRLSHGIFRIHQENEPEKGSENAMITVPADIPVEER 234

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLF 250
             VQ  A   ++ +GCRG++R D   
Sbjct: 235 NRVQETAKKVYRVLGCRGLARVDLFL 260


>gi|317489001|ref|ZP_07947528.1| D-alanine-D-alanine ligase [Eggerthella sp. 1_3_56FAA]
 gi|316911868|gb|EFV33450.1| D-alanine-D-alanine ligase [Eggerthella sp. 1_3_56FAA]
          Length = 328

 Score = 99.0 bits (245), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 91/321 (28%), Positives = 144/321 (44%), Gaps = 36/321 (11%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+ERE+SL+S K   +ALE+AG +   +D    +   L   +PD+ FN LHG
Sbjct: 3   VAVLTGGSSTERELSLASAKNVCAALEEAGHRKVLLDASSDLVSALRVERPDVCFNALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDK------------MRSKQVVSSCGVPVC 108
             GEDG VQ++LE + +P+  S       + DK            +   +  +S    VC
Sbjct: 63  KLGEDGTVQSLLEFVGVPFVGSPSSVCRRAWDKSSLGSEMAAYRAITGDEPTASWPQGVC 122

Query: 109 PSI-------LVNRFTMDSQHLISP-PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160
            +            F +    +I   P  +KP  G S+ G  V + D    L    S + 
Sbjct: 123 IAREAFESMGAATAFDLVEDRVIGGYPVAVKPAHGVSASG--VRRVDSVDQLGEAVSDAL 180

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKS--DFYSYELKYSSLNSTHV 214
           +  D ++IEQ++DG+E+T  V+G      +L   EI   +   D  +     +      V
Sbjct: 181 SFDDAVIIEQWIDGVEVTVPVLGSGWDAYALPPVEIVAKEGFCDTVACRTPGAVELFAPV 240

Query: 215 LPAKIPLD------IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268
            PA +  D      I  E++R A    +A   R ++R D ++D    +V  LE++V P +
Sbjct: 241 RPASLSNDEADAQAIRAEIERAALEVCRAYQVRDLARVDLVWDGAQARV--LEVDVSPSL 298

Query: 269 TPVSIFPEMAAYAGYSFRELL 289
              S F      +G S   +L
Sbjct: 299 AESSPFSLACEASGLSLSGVL 319


>gi|332638511|ref|ZP_08417374.1| D-alanyl-alanine synthetase A [Weissella cibaria KACC 11862]
          Length = 382

 Score = 98.6 bits (244), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 70/251 (27%), Positives = 129/251 (51%), Gaps = 16/251 (6%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           DL + V+HGN GEDG +QA+  LL+ PY   G  ASA+S DK  +K++++  G+     +
Sbjct: 95  DLFYPVVHGNLGEDGTLQALFRLLQKPYIGPGTAASAMSFDKDLTKRILNQAGIRNTKYV 154

Query: 112 LVN-----RFTMDS--QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164
           L+       +T +   + L +    +K  K GSS+GI  +         +  +  +++  
Sbjct: 155 LLTDQNFQDYTYEGLVKELGTEVLFVKAAKQGSSVGISRVTNAAEFEAGVKDALQYDY-- 212

Query: 165 QLLIEQYVDG-IELTCGVMGDASLDVTE---IAVPKSD-FYSYELKYSSLNS-THVLPAK 218
           ++L+E  +    E+   ++G+     +    I +P+ D +Y Y  K+   +     LP +
Sbjct: 213 KVLVEAALTKPREVFISILGNEQPRASRLGGIVLPEQDVWYDYNNKFVDASGMVFELPVE 272

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278
           +  D+ KE+  +A  A++A+G  G++R DF+ D      +  E N  PG T +S++P+M 
Sbjct: 273 LGDDLEKEITDMALNAYKALGLVGLTRMDFMIDA-DGTPYLGEPNTLPGFTNISLYPQMW 331

Query: 279 AYAGYSFRELL 289
             +G S+  L+
Sbjct: 332 EVSGISYTNLI 342


>gi|91226137|ref|ZP_01261027.1| D-alanylalanine synthetase [Vibrio alginolyticus 12G01]
 gi|91189371|gb|EAS75649.1| D-alanylalanine synthetase [Vibrio alginolyticus 12G01]
          Length = 329

 Score = 98.6 bits (244), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 91/324 (28%), Positives = 147/324 (45%), Gaps = 46/324 (14%)

Query: 3   VLMGGISSEREVSLSSGKACASAL-------------EDAGFKVSQ-----IDVD-RSVG 43
           +L GG SSE E+SL S       L             ++ G+  +Q     +D++ + + 
Sbjct: 7   LLCGGGSSEHEISLLSANFVEQQLNLIEDVHVTRVEIKNEGWMTNQGELVYLDLNTKQLC 66

Query: 44  LVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103
              ++   D     +HG  GE G +Q++ E+  IPY   G  AS+ S +K+ SK    + 
Sbjct: 67  SSESNQTIDFIVPCIHGFPGETGDIQSLFEIAGIPYLGCGPEASSNSFNKITSKLWYDAI 126

Query: 104 GVPVCPSILVNRFTMDSQHLISPPY------VIKPLKGGSSLGII-VIKKDQSIPLDLLQ 156
           G+P  P + + R   ++       +       +K  + GSS+G   V  KD+   L    
Sbjct: 127 GIPNTPYLFLTRNDEEAHVQAHKAFEKWGKVFVKAARQGSSVGCYSVTGKDK---LSNAV 183

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYSSLNST 212
           + ++   DQ+L+E+ V   EL       +  L +T   E+  P   FYSY+ KYSS  S+
Sbjct: 184 NDAFGFSDQVLVEKAVKPRELEVAAYEMNGQLHITKPGEVIAPDGAFYSYDEKYSS--SS 241

Query: 213 HVLP-------AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           H L         +I LD  +      F   + +  R +SR DF       +++  E+N  
Sbjct: 242 HSLTEVEAKNLTQIQLDSIQHASETVF---KQMNLRHLSRIDFFLTE-DDEIYLNEVNTF 297

Query: 266 PGMTPVSIFPEMAAYAGYSFRELL 289
           PGMTP+S+FP+M    G+ F E L
Sbjct: 298 PGMTPISMFPKMLQNNGHKFHEFL 321


>gi|2231989|gb|AAB62176.1| vancomycin resistance protein B [Enterococcus faecium]
 gi|2231991|gb|AAB62177.1| vancomycin resistance protein B [Enterococcus faecium]
 gi|2231993|gb|AAB62178.1| vancomycin resistance protein B [Enterococcus faecium]
          Length = 267

 Score = 98.6 bits (244), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 63/206 (30%), Positives = 104/206 (50%), Gaps = 9/206 (4%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+AF VLHG  GEDG +Q +  L  IPY    I +SA  MDK  +  +  + G+ V    
Sbjct: 57  DVAFPVLHGKCGEDGAIQGLFVLSGIPYVGCDIQSSAACMDKSLAYILTKNAGIAVPEFQ 116

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
           ++++        ++ P  +KP + GSS G  V K + +  L+    ++  +  ++LIEQ 
Sbjct: 117 IIDKGDKPEAGALTYPVFVKPARSGSSFG--VTKVNGTEELNAAIEAAGQYDGKILIEQA 174

Query: 172 VDGIELTCGVMGDAS----LDVTEIAVPKSDFYSY---ELKYSSLNSTHVLPAKIPLDIY 224
           + G E+ C VMG+       +V +I +    F  +   E +  S N+   +PA IP++  
Sbjct: 175 ISGCEVGCAVMGNEDDLIVGEVDQIRLSHGIFRIHQENEPEKGSENAMITVPADIPVEER 234

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLF 250
             VQ  A   ++ +GCRG++R D   
Sbjct: 235 NRVQETAKKVYRVLGCRGLARVDLFL 260


>gi|17902566|emb|CAC84690.1| D-Ala:D-Lac ligase [Enterococcus faecium]
          Length = 289

 Score = 98.6 bits (244), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 63/201 (31%), Positives = 104/201 (51%), Gaps = 9/201 (4%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+AF VLHG  GEDG +Q +  L  IPY    I +SA  MDK  +  +  + G+ V    
Sbjct: 91  DVAFPVLHGKCGEDGAIQGLFVLSGIPYVGCDIQSSAACMDKSLAYILTKNAGIAVPEFQ 150

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
           ++++        ++ P  +KP + GSS G  V K + +  L+    ++  +  ++LIEQ 
Sbjct: 151 MIDKGDKPEAGALTYPVFVKPARSGSSFG--VTKVNGTEELNAAIEAAGQYDGKILIEQA 208

Query: 172 VDGIELTCGVMGDAS----LDVTEIAVPKSDFYSY---ELKYSSLNSTHVLPAKIPLDIY 224
           + G E+ C VMG+       +V +I +    F  +   E +  S N+   +PA IP++  
Sbjct: 209 ISGCEVGCAVMGNEDDLIVGEVDQIRLSHGIFRIHQENEPEKGSENAMITVPADIPVEER 268

Query: 225 KEVQRLAFLAHQAIGCRGISR 245
           K VQ  A   ++ +GCRG++R
Sbjct: 269 KRVQETAKKVYRVLGCRGLAR 289


>gi|325844429|ref|ZP_08168156.1| D-ala D-ala ligase N-terminal domain protein [Turicibacter sp.
           HGF1]
 gi|325489103|gb|EGC91487.1| D-ala D-ala ligase N-terminal domain protein [Turicibacter sp.
           HGF1]
          Length = 403

 Score = 98.6 bits (244), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 70/246 (28%), Positives = 122/246 (49%), Gaps = 32/246 (13%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+A  V+HG  GEDG +Q   EL  IPY+   + A+A+  DK+  K ++   G+P+   +
Sbjct: 101 DVAIPVIHGTNGEDGALQGFFELNGIPYSGCDVAAAAVGQDKVFMKNILRDSGLPITNYV 160

Query: 112 -------LVN-RFTMDS-QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
                    N    +D+ +  +S P ++KP+  GSS+GI   K   S+   + ++ S+++
Sbjct: 161 WYYSSDWFANPEACLDAIESKLSYPLMVKPVSLGSSVGISKAKDRASLEEAITEAISYDN 220

Query: 163 GDQLLIEQYVDG-IELTCGVMGD---ASLDVTEIAVPKSDFYSYELKYSS---------- 208
             + ++E+ V   +E+ C V+GD   A   V E  +   +F SY+ KY            
Sbjct: 221 --KFIVEEMVTQLVEVNCSVIGDFSGAKASVLEEVMGSDEFLSYKDKYEGGGGSKGAKTG 278

Query: 209 -------LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
                   ++  ++PA++  +  K VQ LA    + +G  G++R DFL +  +  V+  E
Sbjct: 279 GTKSQGMASTNRIIPARLTDEGTKYVQDLALQTFRVLGSAGVARIDFLINAENNNVYVNE 338

Query: 262 INVQPG 267
           IN  PG
Sbjct: 339 INTIPG 344


>gi|262395454|ref|YP_003287307.1| D-alanine--D-alanine ligase [Vibrio sp. Ex25]
 gi|262339048|gb|ACY52842.1| D-alanine--D-alanine ligase [Vibrio sp. Ex25]
          Length = 329

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 90/324 (27%), Positives = 147/324 (45%), Gaps = 46/324 (14%)

Query: 3   VLMGGISSEREVSLSSGKACASAL-------------EDAGFKVSQ-----IDVD-RSVG 43
           +L GG SSE E+SL S       L             ++ G+  +Q     +D++ + + 
Sbjct: 7   LLCGGGSSEHEISLLSANFVEQQLNLIEDVHVTRVEIKNEGWMTNQGELVYLDLNTKQLC 66

Query: 44  LVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103
              ++   D     +HG  GE G +Q++ E+  IPY   G  AS+ S +K+ SK    + 
Sbjct: 67  SSESNQTIDFIVPCIHGFPGETGDIQSLFEIAGIPYLGCGPEASSNSFNKITSKLWYDAI 126

Query: 104 GVPVCPSILVNRFTMDSQHLISPPY------VIKPLKGGSSLGII-VIKKDQSIPLDLLQ 156
           G+P  P + + R   ++       +       +K  + GSS+G   V +KD+   L    
Sbjct: 127 GIPNTPYLFLTRNDEEAHTQAHKAFEKWGKVFVKAARQGSSVGCYSVTEKDK---LSNAV 183

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYSSLNST 212
           + ++   DQ+L+E+ V   EL       +  L +T   E+  P   FYSY+ KYSS  S+
Sbjct: 184 NDAFGFSDQVLVEKSVKPRELEVAAYEMNGQLHITKPGEVIAPDGAFYSYDEKYSS--SS 241

Query: 213 HVLP-------AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           H L         +  LD  +      F   + +  R +SR DF       +++  E+N  
Sbjct: 242 HSLTEVEAKNLTQAQLDAIQHASERVF---KQMNLRHLSRIDFFLTE-DDEIYLNEVNTF 297

Query: 266 PGMTPVSIFPEMAAYAGYSFRELL 289
           PGMTP+S+FP+M    G+ F E L
Sbjct: 298 PGMTPISMFPKMLQNNGHKFHEFL 321


>gi|325971616|ref|YP_004247807.1| D-alanine--D-alanine ligase [Spirochaeta sp. Buddy]
 gi|324026854|gb|ADY13613.1| D-alanine--D-alanine ligase [Spirochaeta sp. Buddy]
          Length = 360

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 95/349 (27%), Positives = 155/349 (44%), Gaps = 61/349 (17%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI-----------------DVDRSV- 42
           +A++ GG S+E EVS++S      AL+ AG++V  I                  +D ++ 
Sbjct: 3   IALVYGGRSTEHEVSIASALTVHRALKQAGYRVLLIAIALDGRWYLQPNLLSKSIDATIP 62

Query: 43  -----GLVL----AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDK 93
                GL L    A L  D  F   HG  GEDG +Q +  L  +P      ++SAL M K
Sbjct: 63  IHAVPGLGLYVQDAKLDIDAVFATTHGYGGEDGNLQGLCMLCRLPLCGCDTVSSALGMHK 122

Query: 94  MRSKQVVSSCGVPVCPSILVNRFTMD----------SQHLISPPYVIKPLKGGSSLGIIV 143
             + ++     +P  P++L+++  +           ++  + P   +KP   GSS+G+  
Sbjct: 123 HLASELFMQALIPTVPTLLLDKNAVQQVEYTTLLERARSTLGPDLFVKPENSGSSVGVSA 182

Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI-ELTCGVM--GDASLDVT------EIAV 194
           +K   +  L      +  + +++LI+  +  + EL   V+   D  L V       + A 
Sbjct: 183 LKDCDAKALQQAVELARRYSERVLIQLLIHPLQELETAVLETRDKGLVVAGPGLVIDPAK 242

Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIP--LD-----IYKEVQRLAFLAHQAIGCRGISRSD 247
               F SYE KY  +++ H+   +IP  LD     I K   R AFL   AI   G +R D
Sbjct: 243 ETVGFLSYEHKYGKVDTAHI---RIPSGLDDTTETIIKNYARKAFL---AIKGDGYARID 296

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           F       +++  EIN  PG+T  S +P + A  GY    +   +VE+A
Sbjct: 297 FFVS--ENRIYLNEINTSPGLTDTSHYPALLASVGYDLSSVCKHLVENA 343


>gi|84392313|ref|ZP_00991740.1| D-alanylalanine synthetase [Vibrio splendidus 12B01]
 gi|84376433|gb|EAP93313.1| D-alanylalanine synthetase [Vibrio splendidus 12B01]
          Length = 331

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 92/333 (27%), Positives = 151/333 (45%), Gaps = 48/333 (14%)

Query: 3   VLMGGISSEREVSLSSGKACASALED-AGFKVSQIDVDR------SVGLVLAHL------ 49
           +L GG SSE EVSL S       L   A F V ++++        S  LV   +      
Sbjct: 8   LLCGGGSSEHEVSLVSANYLFEQLNSVADFNVVRVEIKNEGWCLDSGELVYLDINNQTLR 67

Query: 50  ------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103
                 K D     +HG  GE G +Q++ E+ +IPY   G  AS  S +K+ SK    + 
Sbjct: 68  GDNLESKVDFIVPCIHGFPGETGDIQSLFEMAKIPYLGCGSEASNNSFNKITSKLWYDAL 127

Query: 104 GVPVCPSILVNRFTMDSQHLISPPY------VIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
           G+P  P + ++     +    +  +       +K  + GSS+G   + + + +   +  +
Sbjct: 128 GIPNTPYLFLSDNNDQAHSQATQAFENWGKVFVKAARQGSSVGCYQVNQVEDLSEAI--N 185

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYSSLNSTH 213
            ++   DQ+L+E+ V   EL       D  L ++   E+  P   FYSYE KYSS   +H
Sbjct: 186 KAFTFSDQVLVEKSVVPRELEVAAYEIDGELHISKPGEVIAPNGAFYSYEEKYSS--DSH 243

Query: 214 VLPAKIPLDIYKEVQRLAFLAHQA------IGCRGISRSDFLFDPLSRKVFWLEINVQPG 267
            +      ++  E  +L  +A  A      +  R +SR DF F     +++  E+N  PG
Sbjct: 244 SITEIEANNLTDE--QLELIADSARKVFTQMKLRHLSRIDF-FLTQDNEIYLNEVNTFPG 300

Query: 268 MTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           MTP+S+FP+M  + G+ F + L       +C+R
Sbjct: 301 MTPISMFPKMVEHDGHKFSQFL------ENCVR 327


>gi|163800670|ref|ZP_02194571.1| D-alanylalanine synthetase [Vibrio sp. AND4]
 gi|159176113|gb|EDP60907.1| D-alanylalanine synthetase [Vibrio sp. AND4]
          Length = 329

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 84/326 (25%), Positives = 151/326 (46%), Gaps = 40/326 (12%)

Query: 3   VLMGGISSEREVSLSSGKACASALED-AGFKVSQIDVDRSVGLVLA-------------- 47
           +L GG S+E E+SL S       L       V+++++ +S G +                
Sbjct: 7   LLCGGGSAEHEISLLSANFVEQQLNLLENVSVTRVEI-KSEGWITNQGELVYLDLNTKKL 65

Query: 48  -----HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS 102
                +L+ D     +HG  GE G +Q++ E+  IPY   G  AS+ S +K+ SK    +
Sbjct: 66  CSDKLNLEIDFIVPCIHGFPGETGDIQSMFEIAGIPYLGCGPEASSNSFNKITSKLWYDA 125

Query: 103 CGVPVCPSILVNRFTMDSQHLISPPY------VIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
            G+P  P + + R    +       +       +K  + GSS+G   + + Q++   +  
Sbjct: 126 IGIPNTPYLFLTRNDEHAHQQALQAFDKWGKVFVKAARQGSSVGCYSVTERQALSQAV-- 183

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYSSLNST 212
           + ++ + +Q+L+E+ V   EL       +  L +T   E+  P   FYSY+ KYS  NS+
Sbjct: 184 NDAFGYSEQVLVEKSVRPRELEVAAYEMNGQLHITPPGEVIAPDGAFYSYDEKYS--NSS 241

Query: 213 HVLPAKIPLDIYKE----VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268
           H L      ++ +E    +++ +    + +  R +SR DF       +++  E+N  PGM
Sbjct: 242 HSLTEVEAKNLTEEQVEVIRQASETVFRQMNLRHLSRIDFFLTE-DGEIYLNEVNTFPGM 300

Query: 269 TPVSIFPEMAAYAGYSFRELLLWMVE 294
           TP+S+FP+M    G+ F + L   +E
Sbjct: 301 TPISMFPKMLQNNGHKFHQFLADCIE 326


>gi|300172646|ref|YP_003771811.1| D-alanine--D-alanine ligase [Leuconostoc gasicomitatum LMG 18811]
 gi|299887024|emb|CBL90992.1| D-alanine--D-alanine ligase [Leuconostoc gasicomitatum LMG 18811]
          Length = 377

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 94/337 (27%), Positives = 157/337 (46%), Gaps = 62/337 (18%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAG------FKVSQ----IDVDRSVG-LVLAHL 49
           +A+L GG SSE +VS  S +    A++  G      F ++Q    +D + S   L L   
Sbjct: 6   VALLFGGNSSEHDVSKRSAQNFYDAIKATGKYEITVFAIAQNGYFLDPESSNRVLALEDE 65

Query: 50  KP---------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
           +P                           D+ F V+HGN GEDG +Q + +LL  PY  +
Sbjct: 66  QPIVDAYMAKIDTTDPLARISALSEGGDFDIFFPVVHGNLGEDGTLQGLFKLLNKPYVGA 125

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIKPLKGG 136
            +   A+S DK  +K++++  G+     ++++  T            +     +K    G
Sbjct: 126 PLRGHAVSFDKAMTKELLTVNGIRNTKYVVLDPKTAKEWTWEKVVAALGDIVFVKAANQG 185

Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIA-- 193
           SS+GI   K   ++  +   S S+ +  ++L+EQ V G  EL  GV+G+    V+EI   
Sbjct: 186 SSVGISRAK--NAVEFEAALSDSFQYDYKVLVEQAVKGSRELEVGVIGNEEPIVSEIGAH 243

Query: 194 -VPKSD----FYSYELKYSSLNSTHVL---PAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
            +P       +Y Y  K+  ++++ VL   PAK+P  +  EV+ +A  A++ +  RG +R
Sbjct: 244 TLPNQGSGDAWYDYNNKF--VDNSDVLFEIPAKLPESVTNEVKDMAIQAYKVLNLRGEAR 301

Query: 246 SDFLFDPLSRKVFWL-EINVQPGMTPVSIFPEMAAYA 281
            DFL D     V +L E N  PG T +S+F  +  Y+
Sbjct: 302 MDFLLD--ENNVPYLGEPNTLPGFTNMSLFKRLWDYS 336


>gi|5616190|gb|AAD45667.1|AF136925_1 D-alanine-D-serine ligase [Enterococcus faecalis]
          Length = 201

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 61/190 (32%), Positives = 108/190 (56%), Gaps = 11/190 (5%)

Query: 69  QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH------ 122
           Q + ELL+IPY   GI A+A+SM+K+   Q     GV   PS+++ +   D Q       
Sbjct: 1   QGVFELLDIPYVGCGIGAAAISMNKIMLHQFAEIVGVKSTPSMIIEK-GQDLQKVDEFAK 59

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
           +   P  IKP + GSS GI  +++   +   + ++S ++   ++LI++ V G+E+ CG++
Sbjct: 60  IHGFPLYIKPNEAGSSKGISKVEQKSDLYKAIDEASKYDS--RILIQKEVKGVEIGCGIL 117

Query: 183 GDASLDVTEI-AVPKSD-FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           G+  L V E   +   D F+ YE KY+ + +  +LPAK+ +D  +++Q  A   ++ +GC
Sbjct: 118 GNEQLVVGECDQISLVDGFFDYEEKYNLVTAEILLPAKLSIDKKEDIQIKAKKLYRLLGC 177

Query: 241 RGISRSDFLF 250
           +G++R DF  
Sbjct: 178 KGLARIDFFL 187


>gi|307322535|ref|ZP_07601881.1| D-alanine--D-alanine ligase [Sinorhizobium meliloti AK83]
 gi|306891817|gb|EFN22657.1| D-alanine--D-alanine ligase [Sinorhizobium meliloti AK83]
          Length = 332

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 82/287 (28%), Positives = 136/287 (47%), Gaps = 29/287 (10%)

Query: 24  SALEDAGFKVSQIDVDRSVGLVLAHLKPD--------LAFNVLHGNFGEDGL--VQAILE 73
           +AL++ G +    + D+ +   L    P         + FN+  G  GE     V A+LE
Sbjct: 37  AALQEGGHETLLCEGDKGLLTTLERFMPTNPQGRPSGIVFNLAEGIQGECRCTHVPAMLE 96

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPL 133
           +  +PYT SG L  AL++DK+ +K+++  CGVP  P+  V R   +S   +  P V+KP 
Sbjct: 97  MAGVPYTASGPLGHALTLDKVITKRLLRDCGVPT-PNFRVMRRGTESIGDLRFPLVVKPR 155

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSS---WNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190
               SLG+ ++ +    P  L Q+       +    L+E+Y+DG E+   ++G+  LDV 
Sbjct: 156 LEDCSLGLQLVHE----PAQLRQAVEAIVTQYKQDALVEEYIDGREIAVALLGNEELDVF 211

Query: 191 EIAVPKSDFYSYELKYSSLNSTHV--------LPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            +   + DF   E +  +  + +V         PA+I   I   ++ ++  A +A  CR 
Sbjct: 212 PLV--EHDFGDRETRLMTREAKYVANAMPPQICPAQIGSGIEAVLRDISVAAFRACQCRD 269

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
            +R D   D   +  F LEIN  PG++  S +      AGYS   L+
Sbjct: 270 YARVDLRVDRFGQP-FVLEINPLPGLSMSSSYVLAGMTAGYSLTSLV 315


>gi|308193610|gb|ADO16336.1| vancomycin resistance protein A [Enterococcus faecium]
          Length = 225

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 64/205 (31%), Positives = 105/205 (51%), Gaps = 9/205 (4%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+AF+ LHG  GEDG +Q + EL  IP+    I +SA+ MDK  +  V  + G+      
Sbjct: 23  DVAFSALHGKSGEDGSIQGLFELSGIPFVGCDIQSSAICMDKSLTYIVAKNAGIATPAFW 82

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
           ++N+         + P  +KP + GSS G  V K + +  LD    S+  +  ++LIEQ 
Sbjct: 83  VINKDDRPVAATFTYPVFVKPARSGSSFG--VKKVNSADELDYAIESARQYDSKILIEQA 140

Query: 172 VDGIELTCGVMGD-ASLDVTEIAVPKSDFYSY------ELKYSSLNSTHVLPAKIPLDIY 224
           V G E+ C V+G+ A+L V E+   +  +  +      E +  S N+   +PA +  +  
Sbjct: 141 VSGCEVGCAVLGNSAALVVGEVDQIRLQYGIFRIHQEVEPEKGSENAFITVPADLSAEER 200

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFL 249
             +Q  A   ++A+GCRG++R D  
Sbjct: 201 GRIQETAKKIYKALGCRGLARVDMF 225


>gi|89897960|ref|YP_515070.1| MurC/ddl bifunctional enzyme [Chlamydophila felis Fe/C-56]
 gi|89331332|dbj|BAE80925.1| MurC/ddl bifunctional enzyme [Chlamydophila felis Fe/C-56]
          Length = 811

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 99/342 (28%), Positives = 154/342 (45%), Gaps = 60/342 (17%)

Query: 1   MAVLMGGISSEREVSLSSGKAC----ASALEDAGF----------KVSQIDVDRSVGLVL 46
           + V+ GG S E +VSL S K      AS   D  +          KV+ ID +       
Sbjct: 454 VGVVCGGQSCEHKVSLLSAKNIIQYLASEYYDVQYFVINRQGLWSKVTAIDAEHDYDKEG 513

Query: 47  AHL----------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRS 96
            H+            D+   +LHG FGEDG +Q  LE+++ PY    +L SA+SMDK+ +
Sbjct: 514 YHVLSSEIAESLANVDVILPILHGPFGEDGTLQGFLEIIDKPYGGPSLLFSAISMDKVMT 573

Query: 97  KQVVSSCGVPVCPSI------------LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
           K++ +S GVPV P              L  R  +++    + P  +K    GSS+G+  +
Sbjct: 574 KRLAASIGVPVVPYQPLTLHAWKRTPDLCMRRILET---FTFPMFVKAAHLGSSIGVFEV 630

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDG---IELTCGVMGDASLDVTEIAVP-----K 196
             ++ +   +  S ++     + IE+   G   IE++C  +GDAS     I+ P     +
Sbjct: 631 HNEEELKSKI--SEAFQCDTDIFIEESRLGSREIEVSC--LGDASSSYY-ISEPHERCGE 685

Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKE----VQRLAFLAHQAIGCRGISRSDFLFDP 252
             F SYE KY   N       +  L+  KE    V+ L    ++ I  +G  R DF  D 
Sbjct: 686 KRFISYEEKY-GFNGKSSAKIQYDLNFSKEAKARVKELTERIYRVIQGKGSCRIDFFLD- 743

Query: 253 LSRKVFWL-EINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            +   FWL EIN  PGMT  S F       G++F +++  ++
Sbjct: 744 -NEGEFWLSEINPIPGMTESSPFLHDFVRVGWTFEQIMHQLI 784


>gi|293375437|ref|ZP_06621718.1| D-ala D-ala ligase N-terminal domain protein [Turicibacter
           sanguinis PC909]
 gi|292645990|gb|EFF64019.1| D-ala D-ala ligase N-terminal domain protein [Turicibacter
           sanguinis PC909]
          Length = 403

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 70/246 (28%), Positives = 121/246 (49%), Gaps = 32/246 (13%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+A  V+HG  GEDG +Q   EL  IPY+   + A+A+  DK+  K ++   G+P+   +
Sbjct: 101 DVAIPVIHGTNGEDGALQGFFELNGIPYSGCDVAAAAVGQDKVFMKNILRDSGLPITNYV 160

Query: 112 -------LVN-RFTMDS-QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
                    N    +D+ +  +S P ++KP   GSS+GI   K   S+   + ++ S+++
Sbjct: 161 WYYSSDWFANPEACLDAIESKLSYPLMVKPASLGSSVGISKAKDRASLEEAITEAISYDN 220

Query: 163 GDQLLIEQYVDG-IELTCGVMGD---ASLDVTEIAVPKSDFYSYELKYSS---------- 208
             + ++E+ V   +E+ C V+GD   A   V E  +   +F SY+ KY            
Sbjct: 221 --KFIVEEMVTQLVEVNCSVIGDFSGAKASVLEEVMGSDEFLSYKDKYEGGGGSKGAKTG 278

Query: 209 -------LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
                   ++  ++PA++  +  K VQ LA    + +G  G++R DFL +  +  V+  E
Sbjct: 279 GTKSQGMASTNRIIPARLTDEGTKYVQDLALQTFRVLGSAGVARIDFLINAENNNVYVNE 338

Query: 262 INVQPG 267
           IN  PG
Sbjct: 339 INTIPG 344


>gi|223986473|ref|ZP_03636475.1| hypothetical protein HOLDEFILI_03790 [Holdemania filiformis DSM
           12042]
 gi|223961574|gb|EEF66084.1| hypothetical protein HOLDEFILI_03790 [Holdemania filiformis DSM
           12042]
          Length = 411

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 69/280 (24%), Positives = 130/280 (46%), Gaps = 41/280 (14%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+   ++HG  GEDG +Q  LE+L+IPY    ++ +A+  DK+  K ++ + G+PVCP  
Sbjct: 100 DVIVPIMHGTNGEDGTIQGYLEMLKIPYAGCDVIGAAVGQDKVVMKHILQNSGLPVCPWF 159

Query: 112 LV--NRFTMDSQ------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
            +  + F    +      H +  P V+KP   GSS+GI +   D+     +  +  ++  
Sbjct: 160 WLYGHEFAQKQEAVLAQVHELGYPVVMKPACLGSSVGITIAHNDEEFIAGVEDARQYD-- 217

Query: 164 DQLLIEQYVDGI-ELTCGVMG---DASLDVTEIAVPKSDFYSYELKY------------- 206
           +++++EQ V  + E+ C V+G   D    V E    + +  S++ KY             
Sbjct: 218 NKIVVEQMVKNLREINCSVLGSCFDCQASVLEEVGKQDEIMSFKDKYLGQGSTKGGSKGG 277

Query: 207 ----------SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256
                        ++  ++PA +     ++++ LA    + +G  G+ R DF+ D  +  
Sbjct: 278 VKCGTKSGDGGMASAARIVPAPVDEATTEKIRNLAIETFKVLGASGVCRIDFMMDGDTGM 337

Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           ++  EIN  PG     ++  +    G SF +L+  +V  A
Sbjct: 338 IYVNEINTIPGSLAYYLWQPV----GVSFTQLMDTLVSQA 373


>gi|329943199|ref|ZP_08291973.1| UDP-N-acetylmuramate--alanine ligase [Chlamydophila psittaci Cal10]
 gi|332287779|ref|YP_004422680.1| UDP-N-acetylmuramate--alanine ligase [Chlamydophila psittaci 6BC]
 gi|313848352|emb|CBY17355.1| putative bifunctional cell division-related protein (includes:
           UDP-N-acetylmuramate--L-alanine ligase and
           D-alanine--D-alanine ligase [Chlamydophila psittaci RD1]
 gi|325507253|gb|ADZ18891.1| UDP-N-acetylmuramate--alanine ligase [Chlamydophila psittaci 6BC]
 gi|328814746|gb|EGF84736.1| UDP-N-acetylmuramate--alanine ligase [Chlamydophila psittaci Cal10]
 gi|328915037|gb|AEB55870.1| UDP-N-acetylmuramate--alanine ligase, putative [Chlamydophila
           psittaci 6BC]
          Length = 810

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 94/340 (27%), Positives = 151/340 (44%), Gaps = 57/340 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------------------- 40
           + V+ GG S E ++SL S +     L    + V    +DR                    
Sbjct: 454 VGVVCGGKSCEHDISLLSARNVVRYLSPEYYDVQYFIIDRQGLWSKVSTIECEDYEGKGH 513

Query: 41  -----SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
                 +   L H+  D    +LHG FGEDG +Q  LE++  PY    +L S+++MDK+ 
Sbjct: 514 YVLSSEITEALTHV--DFILPILHGPFGEDGTLQGFLEIINKPYAGPSLLFSSVTMDKIM 571

Query: 96  SKQVVSSCGVPVCPSILVN-----RFTMDSQHLISP----PYVIKPLKGGSSLGIIVIKK 146
           +K++ +S GVPV P   +      R      H IS     P  +K    GSS+G+  +  
Sbjct: 572 TKRLAASVGVPVVPYQPLTLHAWKRTPELCMHKISEAFTFPMFVKTAHLGSSIGVFEVHN 631

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDG---IELTCGVMGDASLDVTEIAVP-----KSD 198
           ++ +   +  S ++ +   + IE+   G   IE++C  +GD+S     I+ P     +  
Sbjct: 632 EEELKAKI--SEAFLYDTDIFIEESRLGSREIEVSC--LGDSS-SCYYISEPHERCGEKR 686

Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKE----VQRLAFLAHQAIGCRGISRSDFLFDPLS 254
           F SYE KY  LN       +  LD+ +E    V+      ++ I  +G  R DF  D   
Sbjct: 687 FISYEEKY-GLNGRASAQIQYDLDLSEESKIRVKEFTERVYRVIQGQGSCRVDFFLDDEG 745

Query: 255 RKVFWL-EINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
              FWL E+N  PGMT  S F    A  G++F +++  ++
Sbjct: 746 N--FWLSEMNPIPGMTQASPFLHDFARLGWTFEQIIHQLI 783


>gi|124358358|gb|ABN05630.1| vancomycin resistance protein A [Enterococcus faecalis]
          Length = 268

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 69/231 (29%), Positives = 117/231 (50%), Gaps = 11/231 (4%)

Query: 22  CASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81
           C SA+     K+  + V ++    + H+  D+AF+ LHG  GEDG +Q + EL  IP+  
Sbjct: 42  CYSAVLSPDKKMHGLLVKKNHEYEINHV--DVAFSALHGKSGEDGSIQGLFELSGIPFVG 99

Query: 82  SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGI 141
             I +SA+ MDK  +  V  + G+      ++N+         + P  +KP + GSS G 
Sbjct: 100 CDIQSSAICMDKSLTYIVAKNAGIATPAFWVINKDDRPVAATFTYPVFVKPARSGSSFG- 158

Query: 142 IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD-ASLDVTEIAVPKSDFY 200
            V K + +  LD    S+  +  ++LIEQ V G E+ C V+G+ A+L V E+   +  + 
Sbjct: 159 -VKKVNSADELDYAIESARQYDSKILIEQAVSGCEVGCAVLGNSAALVVGEVDQIRLQYG 217

Query: 201 SY------ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
            +      E +  S N+   +PA +  +    +Q  A   ++A+GCRG++R
Sbjct: 218 IFRIHQEVEPEKGSENAVITVPADLSAEERGRIQETAKKIYKALGCRGLAR 268


>gi|268316561|ref|YP_003290280.1| D-alanine/D-alanine ligase [Rhodothermus marinus DSM 4252]
 gi|262334095|gb|ACY47892.1| D-alanine/D-alanine ligase [Rhodothermus marinus DSM 4252]
          Length = 414

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 87/350 (24%), Positives = 149/350 (42%), Gaps = 87/350 (24%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS----VGLVLAHLKP----- 51
           + V+ GG+S E EVS+ +G   A+AL+   +++  + + +      G VL  L+      
Sbjct: 10  VGVVFGGVSPEHEVSVITGLQAAAALDRTRYEIVPLYIAKDGSWYTGPVLLELEAYQDLD 69

Query: 52  ---------------------------------------DLAFNVLHGNFGEDGLVQAIL 72
                                                  D+    LHG  GE+G VQ + 
Sbjct: 70  ALRRAAIPVRFDPAVHGRMLLVEATPRRWPWRRPRRYLVDVVLLALHGGEGENGGVQGLC 129

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL--------- 123
           E L +PYT SG+L SAL MDK+ SK +    G+PV   +         +           
Sbjct: 130 ETLNVPYTGSGVLGSALGMDKVLSKLLCREQGIPVVDFLWFREADWAGREEEWLDRLEAE 189

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI-ELTCGVM 182
           +  P V+KP + GSS+GI  ++  Q+  LD     ++ + +++++E+ +  + E+ C V+
Sbjct: 190 LGYPMVVKPARLGSSIGIQRVEDRQA--LDAAIEEAFRYDEKVVVERAIRNLREINCAVL 247

Query: 183 GDAS-----LDVTEIAVPKSDFYSYELKY--------------------SSLNSTHVLPA 217
           GD S     +    +    S   +++ KY                    +SL+   ++PA
Sbjct: 248 GDPSEARPSMLEEPVRSDPSKLLTFQDKYMRGGGKAGRRAGKQQAPQGMASLD--RIIPA 305

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPG 267
            +     + VQ +A    Q   C G++R DFL D  + +V++ EIN  PG
Sbjct: 306 PLDEAQTRAVQEMAVRVFQLFECAGVARIDFLLDDDTGQVYFNEINTIPG 355


>gi|124358354|gb|ABN05628.1| vancomycin resistance protein A [Enterococcus faecium]
 gi|124358356|gb|ABN05629.1| vancomycin resistance protein A [Enterococcus faecium]
          Length = 270

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 69/231 (29%), Positives = 117/231 (50%), Gaps = 11/231 (4%)

Query: 22  CASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81
           C SA+     K+  + V ++    + H+  D+AF+ LHG  GEDG +Q + EL  IP+  
Sbjct: 44  CYSAVLSPDKKMHGLLVKKNHEYEINHV--DVAFSALHGKSGEDGSIQGLFELSGIPFVG 101

Query: 82  SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGI 141
             I +SA+ MDK  +  V  + G+      ++N+         + P  +KP + GSS G 
Sbjct: 102 CDIQSSAICMDKSLTYIVAKNAGIATPAFWVINKDDRPVAATFTYPVFVKPARSGSSFG- 160

Query: 142 IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD-ASLDVTEIAVPKSDFY 200
            V K + +  LD    S+  +  ++LIEQ V G E+ C V+G+ A+L V E+   +  + 
Sbjct: 161 -VKKVNSADELDYAIESARQYDSKILIEQAVSGCEVGCAVLGNSAALVVGEVDQIRLQYG 219

Query: 201 SY------ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
            +      E +  S N+   +PA +  +    +Q  A   ++A+GCRG++R
Sbjct: 220 IFRIHQEVEPEKGSENAVITVPADLSAEERGRIQETAKKIYKALGCRGLAR 270


>gi|57234544|ref|YP_181371.1| D-ala D-ala ligase [Dehalococcoides ethenogenes 195]
 gi|57224992|gb|AAW40049.1| D-ala D-ala ligase [Dehalococcoides ethenogenes 195]
          Length = 338

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 88/297 (29%), Positives = 143/297 (48%), Gaps = 25/297 (8%)

Query: 20  KACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG--NF-GEDGLVQAILELLE 76
           +A  +AL  AG  V ++   +     +   K DL FN+  G  N+   +  +  ILE+L+
Sbjct: 34  EAITNALTQAGHTVYRLGGGKEFLRRVQEQKLDLVFNIAEGLGNYRSREAQIPGILEMLD 93

Query: 77  IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN---RFTMDSQHLISPPYVIKPL 133
           IPYT S     A+ +DK  +K++V+  G+      LV      +         P  +KP 
Sbjct: 94  IPYTGSDPQTLAVCLDKPLTKKLVADAGIKTARWQLVTSCEELSAIDWSGFPLPAFLKPA 153

Query: 134 KGGSSLGIIV------IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL 187
             GSS G+         K+  S+  +LL +    +   +LIE+++ G E+T GV+G+   
Sbjct: 154 CEGSSKGVRFASRAGSAKEIVSMAAELLTA----YEQPVLIEEFISGEEITVGVIGNIQP 209

Query: 188 DVTEI--AVPKSD----FYSYELKYSSLNST-HVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
            V  I   VPK+      YS E+K +      + +PA +P +    +++    A++ +GC
Sbjct: 210 KVLGIMRVVPKTKTDYFVYSVEVKRNWRQMVEYEVPAALPAETLSRIEKATLDAYKVLGC 269

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-IFPEMAAYAGYSFRELLLWMVEDA 296
           R + R DF   P     F LE+N  PG+ PVS   P MA+  G S  EL+L +++ A
Sbjct: 270 RDLCRMDFRVSPDGIPYF-LEVNPLPGLNPVSGDLPIMASKLGISHAELVLKILDTA 325


>gi|158522759|ref|YP_001530629.1| D-alanine--D-alanine ligase [Desulfococcus oleovorans Hxd3]
 gi|158511585|gb|ABW68552.1| D-alanine--D-alanine ligase [Desulfococcus oleovorans Hxd3]
          Length = 338

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 85/301 (28%), Positives = 141/301 (46%), Gaps = 29/301 (9%)

Query: 21  ACASALEDAGFKVSQIDVDRSVGLVLAHLKP--DLAFNVLHGNFGEDGLVQ--AILELLE 76
           A  + L + GF V  I+ D    + L   +   DL FN   G +G+    Q  A+LE+L 
Sbjct: 35  AMTAHLRECGFDVIPIEADPDAYIKLYENRDSIDLVFNYSIGIYGQARYAQVPAMLEMLR 94

Query: 77  IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGG 136
           +PYT SG L  AL +DK R +QV+S+C VPV  S +        Q  ++ P ++KP+  G
Sbjct: 95  LPYTGSGPLTQALILDKARMQQVLSACNVPVLCSQVFETGDEPLQSGLAFPLIVKPVAQG 154

Query: 137 SSLGII--VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194
           SS GI    + +D++     +       G+  L++ ++DG E +  +MG+   ++  I  
Sbjct: 155 SSAGITSDSVVRDEAALYRQVGRVMATFGEPALVQPFLDGREFSIPMMGNPP-EIFPIIE 213

Query: 195 PKSDFYSYELKYSSLNSTHV--------------LPAKIPLDIYKEVQRLAFLAHQAIGC 240
           P  DF      Y+ ++S  V               PA +   + + +++    A +A+G 
Sbjct: 214 P--DFSRLPEGYARIDSLEVKWIFEEQAESHHLICPAPVAPGLQERLEQTVRAAWKALGI 271

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTP-----VSIFPEMAAYAGYSFRELLLWMVED 295
               R D   D ++   + +++N  PGM P      S FP  A  AG  ++ LL  ++E 
Sbjct: 272 CDWCRIDLRCD-MAGTPYVIDVNSPPGMIPPEGSMTSYFPMSARAAGIDYQGLLKRLIET 330

Query: 296 A 296
           A
Sbjct: 331 A 331


>gi|308193598|gb|ADO16330.1| vancomycin resistance protein A [Enterococcus faecalis]
          Length = 223

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 63/201 (31%), Positives = 104/201 (51%), Gaps = 9/201 (4%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+AF+ LHG  GEDG +Q + EL  IP+    I +SA+ MDK  +  V  + G+      
Sbjct: 25  DVAFSALHGKSGEDGSIQGLFELSGIPFVGCDIQSSAICMDKSLTYIVAKNAGIATPAFW 84

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
           ++N+         + P  +KP + GSS G  V K + +  LD    S+  +  ++LIEQ 
Sbjct: 85  VINKDDRPVAATFTYPVFVKPARSGSSFG--VKKVNSADELDYAIESARQYDSKILIEQA 142

Query: 172 VDGIELTCGVMGD-ASLDVTEIAVPKSDFYSY------ELKYSSLNSTHVLPAKIPLDIY 224
           V G E+ C V+G+ A+L V E+   +  +  +      E +  S N+   +PA +  +  
Sbjct: 143 VSGCEVGCAVLGNSAALVVGEVDQIRLQYGIFRIHQEVEPEKGSENAVITVPADLSAEER 202

Query: 225 KEVQRLAFLAHQAIGCRGISR 245
             +Q  A   ++A+GCRG++R
Sbjct: 203 GRIQETAKKIYKALGCRGLAR 223


>gi|269959743|ref|ZP_06174122.1| D-alanine--D-alanine ligase [Vibrio harveyi 1DA3]
 gi|269835497|gb|EEZ89577.1| D-alanine--D-alanine ligase [Vibrio harveyi 1DA3]
          Length = 329

 Score = 96.7 bits (239), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 88/321 (27%), Positives = 150/321 (46%), Gaps = 40/321 (12%)

Query: 3   VLMGGISSEREVSLSSGKACASAL-------------EDAGFKVSQ-----IDVDRSVGL 44
           +L GG SSE E+SL S       L             ++ G+  +Q     +D++ +  L
Sbjct: 7   LLCGGGSSEHEISLLSANFVEQQLNLIENVSVTRVEIKNEGWVTNQGELVYLDLN-TKKL 65

Query: 45  VLAHLKPDLAFNV--LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS 102
              +L  D+ F V  +HG  GE G +Q++ E+  IPY   G  AS+ S +K+ SK    +
Sbjct: 66  CSDNLSLDIDFIVPCIHGFPGETGDIQSMFEIAGIPYLGCGPEASSNSFNKITSKLWYDA 125

Query: 103 CGVPVCPSILVNRFTMDSQHLISPPY------VIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
            G+P  P + + R    +       +       +K  + GSS+G   + + +++   +  
Sbjct: 126 IGIPNTPYLFLTRNDEQAHEQALQAFDKWGKVFVKAARQGSSVGCYSVTEKEALSQAV-- 183

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYSSLNST 212
           + ++   +Q+L+E+ V   EL       +  L +T   E+  P   FYSY+ KYSS  S+
Sbjct: 184 NDAFGFSEQVLVEKSVKPRELEVAAYEMNGQLFITKPGEVIAPDGAFYSYDEKYSS--SS 241

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAI----GCRGISRSDFLFDPLSRKVFWLEINVQPGM 268
           H L      ++ +E      +A + +      R +SR DF       +++  E+N  PGM
Sbjct: 242 HSLTEVEAKNLTEEQVEAIRVASETVFKQMNLRHLSRIDFFLTE-DDEIYLNEVNTFPGM 300

Query: 269 TPVSIFPEMAAYAGYSFRELL 289
           TP+S+FP+M    G+ F E L
Sbjct: 301 TPISMFPKMLQNNGHKFHEFL 321


>gi|17902563|emb|CAC84688.1| D-Ala:D-Lac ligase [Enterococcus faecium]
          Length = 289

 Score = 96.7 bits (239), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 62/201 (30%), Positives = 104/201 (51%), Gaps = 9/201 (4%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+AF VLHG  GEDG +Q +  L  IPY    I +SA  +DK  +  +  + G+ V    
Sbjct: 91  DVAFPVLHGKCGEDGAIQGLFVLSGIPYVGCDIQSSAACVDKSLAYILTKNAGIAVPEFQ 150

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
           ++++        ++ P  +KP + GSS G  V K + +  L+    ++  +  ++LIEQ 
Sbjct: 151 MIDKGDKPEAGALTYPVFVKPARSGSSFG--VTKVNGTEELNAAIEAAGQYDGKILIEQA 208

Query: 172 VDGIELTCGVMGDAS----LDVTEIAVPKSDFYSY---ELKYSSLNSTHVLPAKIPLDIY 224
           + G E+ C VMG+       +V +I +    F  +   E +  S N+   +PA IP++  
Sbjct: 209 ISGCEVGCAVMGNEDDLIVGEVDQIRLSHGIFRIHQENEPEKGSENAMITVPADIPVEER 268

Query: 225 KEVQRLAFLAHQAIGCRGISR 245
           K VQ  A   ++ +GCRG++R
Sbjct: 269 KRVQETAKKVYRVLGCRGLAR 289


>gi|209162489|gb|ACI39952.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162491|gb|ACI39953.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162493|gb|ACI39954.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162495|gb|ACI39955.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162497|gb|ACI39956.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162503|gb|ACI39959.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162515|gb|ACI39965.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162517|gb|ACI39966.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162519|gb|ACI39967.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162521|gb|ACI39968.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162523|gb|ACI39969.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162525|gb|ACI39970.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162527|gb|ACI39971.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162529|gb|ACI39972.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162531|gb|ACI39973.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162533|gb|ACI39974.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162535|gb|ACI39975.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162537|gb|ACI39976.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162539|gb|ACI39977.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162541|gb|ACI39978.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162543|gb|ACI39979.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162545|gb|ACI39980.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162547|gb|ACI39981.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162549|gb|ACI39982.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162551|gb|ACI39983.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162553|gb|ACI39984.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162555|gb|ACI39985.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162557|gb|ACI39986.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162561|gb|ACI39988.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162573|gb|ACI39994.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162583|gb|ACI39999.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162593|gb|ACI40004.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162597|gb|ACI40006.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162613|gb|ACI40014.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162615|gb|ACI40015.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162617|gb|ACI40016.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162619|gb|ACI40017.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162621|gb|ACI40018.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162623|gb|ACI40019.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162625|gb|ACI40020.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162627|gb|ACI40021.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162629|gb|ACI40022.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162631|gb|ACI40023.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162633|gb|ACI40024.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162635|gb|ACI40025.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162637|gb|ACI40026.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162641|gb|ACI40028.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162643|gb|ACI40029.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162657|gb|ACI40036.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162665|gb|ACI40040.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162667|gb|ACI40041.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162679|gb|ACI40047.1| D-alanine-D-alanine ligase [Clostridium septicum]
          Length = 184

 Score = 96.7 bits (239), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 58/187 (31%), Positives = 100/187 (53%), Gaps = 7/187 (3%)

Query: 66  GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI---LVNRFTMDSQH 122
           G VQ++L+ L+IPY+  G L+SAL MDK  +K+++ S  +     +    V     D   
Sbjct: 1   GTVQSVLQTLDIPYSGCGPLSSALCMDKDLTKRILKSNNIRTARWLNVRSVEEINYDKIE 60

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            +  P  IKP  GGSS+    I K + +   + +   W++  +++IE+++ G E+TC V 
Sbjct: 61  EMKYPVFIKPTNGGSSVATFKITKKEDVEEAVREGLKWDN--EVMIEEFIKGEEITCPVF 118

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
                 V  I  PK+DF+ Y  KYS   +  V+  ++   ++KEV+++A   ++A+ C  
Sbjct: 119 KGEMFPVIAIR-PKTDFFDYTQKYSGDGAEEVI-IELEEKLHKEVEQMALDTYKALKCSV 176

Query: 243 ISRSDFL 249
            SR D +
Sbjct: 177 YSRIDMI 183


>gi|220921310|ref|YP_002496611.1| D-alanyl-alanine synthetase A [Methylobacterium nodulans ORS 2060]
 gi|219945916|gb|ACL56308.1| D-alanine/D-alanine ligase [Methylobacterium nodulans ORS 2060]
          Length = 378

 Score = 96.3 bits (238), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 95/342 (27%), Positives = 154/342 (45%), Gaps = 55/342 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL-------------VLA 47
           +A+L GG S+E EVS+ S    A AL+   + V+ I +D+  G               + 
Sbjct: 5   VALLFGGRSAEHEVSILSAGNVARALDPDRYAVTPIAIDKETGAWRLCPALAAGEAPAMG 64

Query: 48  HLKPDLAF-------------------------NVLHGNFGEDGLVQAILELLEIPYTHS 82
              P +AF                          VLHG  GEDG VQ  L+L  +PY  S
Sbjct: 65  QDGPLVAFLPGGGGRLAILSDAAALSEPFDVVVPVLHGPNGEDGTVQGALDLAGVPYVGS 124

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNR------FTMDSQHLISPPYVIKPLKGG 136
           G++ SA +MDK  +K+++   G+P+    L         +   +  L S    +KP   G
Sbjct: 125 GVVGSAAAMDKDVAKRLMRDAGLPMIVPFLAATARRPVSYADAAAALESRTLFVKPANMG 184

Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVM--GDASLDVT--- 190
           SS+G+  +        D   + ++ + +++LIE+ V    E+ C V+   +  L V+   
Sbjct: 185 SSVGVSRVTDPAQ--FDRAAAHAFGYDEKILIERAVPQAREIECAVLETPEGELRVSPPG 242

Query: 191 EIAVPKS-DFYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           EIA   +  FY Y+ KY   +   +L PA +       ++ LA  A  A+ C G++R D 
Sbjct: 243 EIAPAAAHGFYGYDAKYLDPDGAALLIPAALDAARADRMRELAARAFAALACAGLARVDL 302

Query: 249 LFDPLSRK-VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
             DP     +F  E+N  PG T +S++P++   AG +   L+
Sbjct: 303 FLDPADPAGIFVNEVNTLPGFTAISMYPKLWDAAGLAPPALM 344


>gi|313888855|ref|ZP_07822516.1| D-ala D-ala ligase N-terminal domain protein [Peptoniphilus harei
           ACS-146-V-Sch2b]
 gi|312845224|gb|EFR32624.1| D-ala D-ala ligase N-terminal domain protein [Peptoniphilus harei
           ACS-146-V-Sch2b]
          Length = 390

 Score = 96.3 bits (238), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 78/245 (31%), Positives = 118/245 (48%), Gaps = 28/245 (11%)

Query: 45  VLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCG 104
           V  + K D  F  LHG FGEDG  Q + EL+ +PYT  G++++A+ MDK+  ++V  S  
Sbjct: 99  VEVYQKIDAIFFALHGTFGEDGCTQGLFELMGMPYTGCGVMSAAVGMDKVIMRKVFESED 158

Query: 105 VPVCPSILVNRFTMDS-QHLISP------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
           +P+       R  + + + LI        P  +KP   GSS+GI  ++      LDL ++
Sbjct: 159 IPMTKYKYFYREELKNLKGLIEKCKDLNFPLFVKPANLGSSIGISRVEN----ALDLSKA 214

Query: 158 -SSWNHGDQLLI--EQYVDGIELTCGVMG---DASLDVTEIAVPKSDFYSYELKY----- 206
                H D+ +I  E  V+  E+   V+G   D  +   E  +   D   YE KY     
Sbjct: 215 LEVAAHYDRKIIVEEAVVNPREINVAVLGYENDLRVSAAEEPLGFKDLLKYEDKYVSGSK 274

Query: 207 ----SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
               S  +    LPA++  ++ KE++ LA  A  AI   G++R DFL D    K +  EI
Sbjct: 275 GAKSSQKHQNKKLPAELKPELEKEIKELAKKAFSAIDGAGVARIDFLVD--GDKAYVNEI 332

Query: 263 NVQPG 267
           N  PG
Sbjct: 333 NTLPG 337


>gi|209162465|gb|ACI39940.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162467|gb|ACI39941.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162469|gb|ACI39942.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162471|gb|ACI39943.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162473|gb|ACI39944.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162475|gb|ACI39945.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162477|gb|ACI39946.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162479|gb|ACI39947.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162481|gb|ACI39948.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162483|gb|ACI39949.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162485|gb|ACI39950.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162487|gb|ACI39951.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162499|gb|ACI39957.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162501|gb|ACI39958.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162505|gb|ACI39960.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162507|gb|ACI39961.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162509|gb|ACI39962.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162511|gb|ACI39963.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162513|gb|ACI39964.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162559|gb|ACI39987.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162563|gb|ACI39989.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162565|gb|ACI39990.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162567|gb|ACI39991.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162569|gb|ACI39992.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162571|gb|ACI39993.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162575|gb|ACI39995.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162577|gb|ACI39996.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162579|gb|ACI39997.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162581|gb|ACI39998.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162585|gb|ACI40000.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162587|gb|ACI40001.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162589|gb|ACI40002.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162591|gb|ACI40003.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162595|gb|ACI40005.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162599|gb|ACI40007.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162601|gb|ACI40008.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162603|gb|ACI40009.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162605|gb|ACI40010.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162607|gb|ACI40011.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162609|gb|ACI40012.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162611|gb|ACI40013.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162639|gb|ACI40027.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162645|gb|ACI40030.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162647|gb|ACI40031.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162649|gb|ACI40032.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162651|gb|ACI40033.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162653|gb|ACI40034.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162655|gb|ACI40035.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162659|gb|ACI40037.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162661|gb|ACI40038.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162663|gb|ACI40039.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162669|gb|ACI40042.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162671|gb|ACI40043.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162673|gb|ACI40044.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162675|gb|ACI40045.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162677|gb|ACI40046.1| D-alanine-D-alanine ligase [Clostridium septicum]
          Length = 184

 Score = 95.9 bits (237), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 58/187 (31%), Positives = 100/187 (53%), Gaps = 7/187 (3%)

Query: 66  GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI---LVNRFTMDSQH 122
           G VQ++L+ L+IPY+  G L+SAL MDK  +K+++ S  +     +    V     D   
Sbjct: 1   GTVQSVLQTLDIPYSGCGPLSSALCMDKDLTKRILKSNNIRTARWLNVRSVEEIDYDKIE 60

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            +  P  IKP  GGSS+    I K + +   + +   W++  +++IE+++ G E+TC V 
Sbjct: 61  EMKYPVFIKPTNGGSSVATFKITKKEDVEEAVREGLKWDN--EVMIEEFIKGEEITCPVF 118

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
                 V  I  PK+DF+ Y  KYS   +  V+  ++   ++KEV+++A   ++A+ C  
Sbjct: 119 KGEMFPVIAIR-PKTDFFDYTQKYSGDGAEEVI-IELEEKLHKEVEQMALDTYKALKCSV 176

Query: 243 ISRSDFL 249
            SR D +
Sbjct: 177 YSRIDMI 183


>gi|262158758|ref|ZP_06029871.1| D-alanine--D-alanine ligase [Vibrio cholerae INDRE 91/1]
 gi|262029331|gb|EEY47982.1| D-alanine--D-alanine ligase [Vibrio cholerae INDRE 91/1]
          Length = 318

 Score = 95.9 bits (237), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 94/312 (30%), Positives = 146/312 (46%), Gaps = 36/312 (11%)

Query: 3   VLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDVDR----SVGLVLAHLKP------ 51
           +L GG SSE E+SL S       LE    F V ++++ +    S    L +L        
Sbjct: 8   LLCGGGSSEHEISLVSANYIQQQLELTPEFHVIRVEMKKEGWFSEQGALVYLDTNSATLN 67

Query: 52  --------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103
                   D     +HG  GE G +Q++LEL  IPY   G  ASA S +K+ SK    + 
Sbjct: 68  SDKASYPIDFVVPCIHGFPGETGDIQSMLELAGIPYLGCGPEASANSFNKITSKLWYDAL 127

Query: 104 GVPVCPSILVNRFTMDSQHLISPPY------VIKPLKGGSSLGII-VIKKDQSIPLDLLQ 156
            +P  P + + + T  S       +       +K  + GSS+G   V  +DQ  P     
Sbjct: 128 DIPNTPYLFLTQNTPSSIDKAKQAFGHWGSIFVKAARQGSSVGCYKVTTEDQIAPAI--- 184

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYS-SLNS 211
            +++   +Q+L+EQ V   EL       +  L ++   E+  P+  FYSYE KYS + ++
Sbjct: 185 EAAFGFSEQVLVEQAVKPRELEVSAYEMNGKLYISKPGEVIAPEGTFYSYEEKYSANSHA 244

Query: 212 THVLPAKIPLDIYKE-VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270
             VL A+   + +KE +Q  A      +  R +SR DF F     +++  E+N  PGMTP
Sbjct: 245 RTVLEAENLTEKHKELIQTYAERVFIHMKLRHLSRIDF-FLTQEGQIYLNEVNTFPGMTP 303

Query: 271 VSIFPEMAAYAG 282
           +S+FP+M  + G
Sbjct: 304 ISMFPKMLEHNG 315


>gi|153004284|ref|YP_001378609.1| D-alanine--D-alanine ligase [Anaeromyxobacter sp. Fw109-5]
 gi|152027857|gb|ABS25625.1| D-alanine--D-alanine ligase [Anaeromyxobacter sp. Fw109-5]
          Length = 731

 Score = 95.9 bits (237), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 82/283 (28%), Positives = 139/283 (49%), Gaps = 14/283 (4%)

Query: 20  KACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGE--DGLVQAILELLEI 77
           +A   A+   G +V  ++    +  VLA    D+ FN+  G  G   +  V A+LELL+I
Sbjct: 377 QAIREAIASYGHEVVDLEATTELPFVLAATPVDVVFNIAEGFRGRNRESAVPALLELLDI 436

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGS 137
           PYT S   A ++S+DK  +K++V + GV      +++         +S P ++KP+  G+
Sbjct: 437 PYTGSDPAALSVSLDKALAKRMVRTHGVLTPDYAVMHTGKERLPRELSFPLLVKPVAEGT 496

Query: 138 SLGII--VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS---LDVTEI 192
           S G+    I +D+    ++ +     +    L+E YV G E T G++G+     L   EI
Sbjct: 497 SKGVTKKSIVRDELELREVARELIAKYRQPALVEAYVAGREFTVGLLGERRPRVLPPMEI 556

Query: 193 ----AVPKSDFYSYELKYSSLNS-THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
               A   +  YS+E+K    +   + +PA++       ++R A     A+GCR I+R D
Sbjct: 557 VFLDASDPTPIYSFEMKQDWNDKIRYEVPARLSPRELDRLERAARECFTALGCRDIARVD 616

Query: 248 FLFDPLSRKVFWLEINVQPGMTPV-SIFPEMAAYAGYSFRELL 289
           F  D   R ++++E N  PG+ P  S    +A  AG  +R L+
Sbjct: 617 FRMDAEGR-IYFIECNPLPGLAPGWSDLVLIAQAAGIEYRALI 658



 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 81/316 (25%), Positives = 140/316 (44%), Gaps = 33/316 (10%)

Query: 10  SEREVSLSSGK---ACASALEDAGFKVSQIDVDRSVGLVLAHLK---PDLAFNVLHGNFG 63
           SE E    + +   A A+ALE  G +V +++V       +A L+   PDL FN   G  G
Sbjct: 14  SEEEAEFDTRETVDALAAALERLGHRVERLEVSGPASRTVARLEAFGPDLIFNTAEGRRG 73

Query: 64  E--DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ 121
              +    A+ + L +PYT S   A AL++DK  +K V++  GV       V        
Sbjct: 74  RFREAFFPALFDELGMPYTGSDAYALALTLDKQLTKLVLAQHGVATPRWQYVEEARQLQP 133

Query: 122 HLISPPYVIKPLKGGSSLGII--VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
           + +  P ++KP   GSS GI    + +D     ++++ +   +   LL+E+++ G ++T 
Sbjct: 134 NALRYPVIVKPNFEGSSKGITQDSVVEDSLRLHEVVREALRRYPAGLLVEEFIVGRDVTV 193

Query: 180 GVMGDAS-------------LDVTEIAVPKSDFYSYELK-----YSSLNSTHVLPAKIPL 221
             +  A+             +D    A  +   Y YELK     Y S+ +    PAK+  
Sbjct: 194 PYLEAAAPERHGVLQPVEYVIDEAAAATRRYAIYDYELKTKLDRYVSVRA----PAKLKR 249

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYA 281
              + +Q+L    ++ +G R + R D         +++LEIN  P + P +     AA  
Sbjct: 250 SQAERIQQLCETVYRQLGIRDLGRIDLRLGE-DGAIYFLEINALPSLEPGAGIYASAALE 308

Query: 282 GYSFRELLLWMVEDAS 297
           G     +L  ++E A+
Sbjct: 309 GLHADAVLGAVIESAT 324


>gi|330719424|ref|ZP_08314024.1| D-alanyl-alanine synthetase A [Leuconostoc fallax KCTC 3537]
          Length = 377

 Score = 95.9 bits (237), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 93/331 (28%), Positives = 154/331 (46%), Gaps = 58/331 (17%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAG------FKVSQ----IDVDRSVGLV----- 45
           +A++ GG SSE +VS  S +   +A+   G      F ++Q    +D D S  +      
Sbjct: 5   VALVFGGNSSEHDVSKRSAENIYNAIMATGKYDVTLFSIAQNGYFLDPDASRRIFEGEDE 64

Query: 46  ----------------LAHLKP-------DLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
                           LA +K        D+ F V+HGN GEDG +Q +  LL  P+  +
Sbjct: 65  QMVVDEFMAKVDEKDPLARIKAISQAGQFDIFFPVVHGNLGEDGTLQGLFRLLNKPFVGA 124

Query: 83  GILASALSMDKMRSKQVVSSCGVP------VCPSILVNRFTMDSQHLISPPYVIKPLKGG 136
            +   A+S DK+ +K++++  G+       V P  + N    D +  +     +K    G
Sbjct: 125 PLRGHAVSFDKVLTKELLTVNGIRNTKYIVVSPESVDNWRWSDVKTQLGDIVFVKAANQG 184

Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIA-- 193
           SS+GI  +  +      L  S  +++  ++LIE+ V G  EL  GV+G+    V+ I   
Sbjct: 185 SSVGISRVTNELEYQRALQDSFQYDY--KVLIEEAVKGPRELEVGVIGNEKPIVSVIGAH 242

Query: 194 -VPKSD----FYSYELKYSSLNST-HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
            VP       +Y Y  K+   +S    +PAK+  ++ +EV+ +A  A+Q +  RG +R D
Sbjct: 243 TVPNQGDGDAWYDYSNKFVDNSSVLFEIPAKLTPEVTQEVKDMALKAYQVLDLRGEARMD 302

Query: 248 FLFDPLSRKVFWL-EINVQPGMTPVSIFPEM 277
           FL D     + +L E N  PG T +S+FP +
Sbjct: 303 FLLD--ENGIPYLGEPNTLPGFTNMSLFPRL 331


>gi|170016570|ref|YP_001727489.1| D-alanine--D-alanine ligase [Leuconostoc citreum KM20]
 gi|229485963|sp|B1MWZ3|DDL_LEUCK RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|169803427|gb|ACA82045.1| D-alanine--D-alanine ligase [Leuconostoc citreum KM20]
          Length = 377

 Score = 95.5 bits (236), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 95/348 (27%), Positives = 157/348 (45%), Gaps = 58/348 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAG------FKVSQ----IDVDRSVG-LVLAHL 49
           +A++ GG SSE +VS  S +    A+   G      F ++Q    +D +RS   L L   
Sbjct: 6   VALIFGGNSSEHDVSKRSAQNFYDAILATGKYRITVFAIAQNGYVLDPERSKRILALEDE 65

Query: 50  KP---------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
           +P                           D+ F V+HGN GEDG +Q + +LL  PY  +
Sbjct: 66  RPIVADYMTTVDQQDPLSRINALRAAGDFDIFFPVVHGNLGEDGTLQGLFKLLNKPYVGA 125

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIKPLKGG 136
            +   A+S DK+ +K++++   +     I+V+  T  +         +     +K    G
Sbjct: 126 PLRGHAVSFDKVLTKELLTVNNIRNTKYIVVDEKTAKTLTWAQVVKDLGDVVFVKAANQG 185

Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIA-- 193
           SS+G+   K        L  S  +++  ++LIE  V G  EL  GV+G+    V+EI   
Sbjct: 186 SSVGVSRAKTADEFEAALTDSFQYDY--KVLIEAAVKGPRELEVGVIGNEDPIVSEIGAH 243

Query: 194 -VPKSD----FYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
            VP       +Y Y  K+   +S    +PA +P  +  EV+ +A  A++ +  RG +R D
Sbjct: 244 HVPNQGDGDAWYDYNNKFVDNSSVQFEIPANLPDAVTAEVKDMALKAYKVLDLRGEARMD 303

Query: 248 FLFDPLSRKVFWL-EINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           FL D     V +L E N  PG T +S+F  +  Y+     EL+  +++
Sbjct: 304 FLLD--ENNVPYLGEPNTLPGFTNMSLFKRLWDYSDIDNVELVDKLID 349


>gi|117920750|ref|YP_869942.1| D-alanyl-alanine synthetase A [Shewanella sp. ANA-3]
 gi|189083055|sp|A0KXL7|DDL_SHESA RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|117613082|gb|ABK48536.1| D-alanine--D-alanine ligase [Shewanella sp. ANA-3]
          Length = 336

 Score = 95.5 bits (236), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 87/321 (27%), Positives = 147/321 (45%), Gaps = 37/321 (11%)

Query: 3   VLMGGISSEREVSLSSGKACASAL-EDAGFKVSQIDVDRSVGLVLA-------------- 47
           +L GG S+E ++SL S     ++L +   F V ++ +D+      A              
Sbjct: 8   LLCGGGSAEHDISLLSANYFETSLAKSEQFNVLRVVLDKFGQYQTAAGDDCELTNNREIR 67

Query: 48  ---HLKP----DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
                KP    D     +HG  GE G +Q+   L+++PY      AS+   +K+ +K   
Sbjct: 68  FRDETKPAWPVDYVIPCIHGYPGETGDIQSYFNLIQLPYFGCESEASSNCFNKITAKMWF 127

Query: 101 SSCGVPVCPSILVNRFTMD----SQHLISP--PYVIKPLKGGSSLGIIVIKKDQSIPLDL 154
           S+ G+P  P I +N++  D    +Q  +       +K    GSS+G   +  D S   D+
Sbjct: 128 SALGIPNTPYIFLNQYDDDAIAQTQAALENWGSIFVKAASQGSSVGCYKV-DDSSKVADV 186

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT----EIAVPKSDFYSYELKY--SS 208
           L+  ++ +   +++E+ +   EL   V       V     EI    + FY+++ KY  SS
Sbjct: 187 LK-DAFGYAPYVIVEKTIKARELEVAVYEYQGEVVATLPGEIICDSNTFYTFDEKYAKSS 245

Query: 209 LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268
              T V+   +P DI ++++  A  A + +  R +SR DF F     ++   EIN  PG 
Sbjct: 246 KARTDVVAQNVPTDISEQIRAYAIKAFKGMKLRHLSRIDF-FLTQDNEILLNEINTFPGS 304

Query: 269 TPVSIFPEMAAYAGYSFRELL 289
           TP+S+FP+M    G+ F E L
Sbjct: 305 TPISMFPKMLQNHGHDFTEYL 325


>gi|479086|emb|CAA55651.1| vanA2 [Oerskovia turbata]
          Length = 261

 Score = 95.5 bits (236), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 65/214 (30%), Positives = 105/214 (49%), Gaps = 9/214 (4%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+AF+ LHG  GEDG +Q + EL  IP+    I +SA+ MDK  +  V  + G+      
Sbjct: 48  DVAFSALHGKSGEDGSIQGLFELSGIPFVGCDIQSSAICMDKSLTYIVAKNAGIATPAFW 107

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
           ++N+         + P   KP + GSS G  V K + +  LD    S+  +  ++LIEQ 
Sbjct: 108 VINKDDRPVAATSTYPVFGKPARSGSSFG--VKKVNSADELDYAIESARQYDSKILIEQA 165

Query: 172 VDGIELTCGVMGD-ASLDVTEIAVPKSDFYSY------ELKYSSLNSTHVLPAKIPLDIY 224
           V G E+ C V+G+ A+L V E+   +  +  +      E +  S N+   +PA +  +  
Sbjct: 166 VSGCEVGCAVLGNSAALVVGEVDQIRLQYGIFRIHQEVEPEKGSENAVITVPADLSAEER 225

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
             +Q      ++A+GCRG++R D       R V 
Sbjct: 226 GRIQETGKKIYKALGCRGLARVDMFLQDNGRIVL 259


>gi|258674435|gb|ACV86990.1| vancomycin resistance protein A [Enterococcus faecium]
 gi|258674437|gb|ACV86991.1| vancomycin resistance protein A [Enterococcus faecium]
          Length = 214

 Score = 95.5 bits (236), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 62/200 (31%), Positives = 103/200 (51%), Gaps = 9/200 (4%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+AF+ LHG  GEDG +Q + EL  IP+    I +SA+ MDK  +  V  + G+      
Sbjct: 17  DVAFSALHGKSGEDGSIQGLFELSGIPFVGCDIQSSAICMDKSLTYIVAKNAGIATPAFW 76

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
           ++N+         + P  +KP + GSS G  V K + +  LD    S+  +  ++LIEQ 
Sbjct: 77  VINKDDRPVAATFTYPVFVKPARSGSSFG--VKKVNSADELDYAIESARQYDSKILIEQA 134

Query: 172 VDGIELTCGVMGD-ASLDVTEIAVPKSDFYSY------ELKYSSLNSTHVLPAKIPLDIY 224
           V G E+ C V+G+ A+L V E+   +  +  +      E +  S N+   +PA +  +  
Sbjct: 135 VSGCEVGCAVLGNSAALAVGEVDQIRLQYGIFRIHQEVEPEKGSENAVITVPADLSAEER 194

Query: 225 KEVQRLAFLAHQAIGCRGIS 244
             +Q  A   ++A+GCRG++
Sbjct: 195 GRIQETAKKIYKALGCRGLA 214


>gi|258674439|gb|ACV86992.1| vancomycin resistance protein A [Enterococcus faecium]
 gi|258674441|gb|ACV86993.1| vancomycin resistance protein A [Enterococcus faecium]
 gi|258674443|gb|ACV86994.1| vancomycin resistance protein A [Enterococcus faecium]
          Length = 216

 Score = 95.5 bits (236), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 62/200 (31%), Positives = 103/200 (51%), Gaps = 9/200 (4%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+AF+ LHG  GEDG +Q + EL  IP+    I +SA+ MDK  +  V  + G+      
Sbjct: 19  DVAFSALHGKSGEDGSIQGLFELSGIPFVGCDIQSSAICMDKSLTYIVAKNAGIATPAFW 78

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
           ++N+         + P  +KP + GSS G  V K + +  LD    S+  +  ++LIEQ 
Sbjct: 79  VINKDDRPVAATFTYPVFVKPARSGSSFG--VKKVNSADELDYAIESARQYDSKILIEQA 136

Query: 172 VDGIELTCGVMGD-ASLDVTEIAVPKSDFYSY------ELKYSSLNSTHVLPAKIPLDIY 224
           V G E+ C V+G+ A+L V E+   +  +  +      E +  S N+   +PA +  +  
Sbjct: 137 VSGCEVGCAVLGNSAALAVGEVDQIRLQYGIFRIHQEVEPEKGSENAVITVPADLSAEER 196

Query: 225 KEVQRLAFLAHQAIGCRGIS 244
             +Q  A   ++A+GCRG++
Sbjct: 197 GRIQETAKKIYKALGCRGLA 216


>gi|62185432|ref|YP_220217.1| putative bifunctional cell division-related protein (includes:
           UDP-N-acetylmuramate--L-alanine ligase and
           D-alanine--D-alanine ligase [Chlamydophila abortus
           S26/3]
 gi|62148499|emb|CAH64270.1| putative bifunctional cell division-related protein (includes:
           UDP-N-acetylmuramate--L-alanine ligase and
           D-alanine--D-alanine ligase [Chlamydophila abortus
           S26/3]
          Length = 810

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 93/340 (27%), Positives = 154/340 (45%), Gaps = 57/340 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------------------- 40
           + V+ GG S E ++S+ S K     L    + +    +DR                    
Sbjct: 454 VGVVCGGKSCEHDISVLSAKNVVRYLSPEYYDIQYFIIDRQGLWSKVSTIECEDYEGKGY 513

Query: 41  -----SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
                 +   L HL  D    +LHG FGEDG +Q  LE++  PY    +L S+++MDK+ 
Sbjct: 514 HVLSSEITEALIHL--DFILPILHGPFGEDGTLQGFLEIINQPYAGPSLLFSSVTMDKIM 571

Query: 96  SKQVVSSCGVPVCP----SILVNRFTMD-SQHLISP----PYVIKPLKGGSSLGIIVIKK 146
           +K++ +S GVPV P    ++   + T +   H I+     P  +K    GSS+G+  +  
Sbjct: 572 TKRLAASVGVPVVPYQPLTLHAWKRTPELCMHKIAEAFTFPMFVKTAHLGSSIGVFEVHN 631

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDG---IELTCGVMGDASLDVTEIAVP-----KSD 198
           ++ +   +  S ++ +   + IE+   G   IE++C  +GD+S     I+ P     +  
Sbjct: 632 EEELKAKI--SEAFLYDTDIFIEESRLGSREIEVSC--LGDSS-SCYYISEPHERCGEKR 686

Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKE----VQRLAFLAHQAIGCRGISRSDFLFDPLS 254
           F SYE KY  LN       +  LD+ +E    V+ L    ++ I  +G  R DF  D   
Sbjct: 687 FISYEDKY-GLNGRTSAQIQYDLDLSEELKIRVKELTERMYRVIQGQGSCRVDFFLDDEG 745

Query: 255 RKVFWL-EINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
              FWL E+N  PGMT  S F       G++F +++  ++
Sbjct: 746 N--FWLSEMNPIPGMTKASPFLHDFVRLGWTFEQVIHQLI 783


>gi|268323535|emb|CBH37123.1| putative D-alanine--D-alanine ligase [uncultured archaeon]
 gi|268323656|emb|CBH37244.1| putative D-alanine--D-alanine ligase [uncultured archaeon]
          Length = 339

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 73/270 (27%), Positives = 132/270 (48%), Gaps = 33/270 (12%)

Query: 52  DLAFNVLHGNFGE--DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109
           D+ FN+  G  GE  +  + AI ++LEIPYT SG+L   L ++K+R+K+++   G+P  P
Sbjct: 67  DIVFNIAEGLRGESRESYIPAICDMLEIPYTGSGVLTLGLCLNKVRTKEILRYYGIPT-P 125

Query: 110 SILVNRF---TMDSQHLISPPYVIKPLKGGSSLGI----IVIKKDQSIPLDLLQSSSW-- 160
              + R     +D +  +  P ++K L  GS +G+    IV  ++     DL    ++  
Sbjct: 126 DFWLFRSKNEKLDLELELKFPLIVKLLHEGSQMGLSSDSIVCSEE-----DLRDRVAYLM 180

Query: 161 -NHGDQLLIEQYVDGIELTCGVMGDAS---LDVTE----------IAVPKSDFYSYELKY 206
             +G+ +++E+++DG E T G++G+     L + E          +  P      +  K 
Sbjct: 181 HEYGEPVIVEEFLDGREFTVGILGNEKPIILPIVEALFEEGQKMRLFTPDKPLLPFIPKG 240

Query: 207 SSLN--STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            ++N     V PA +  D+  E++ +A  A++A+ CR   R D            LE+N 
Sbjct: 241 VAINLKERSVCPADVDEDLRSEIEEIALNAYRALDCRDWCRIDLRMTRDGDIPNVLELNP 300

Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             G+ P  + P  A  AG S++ L+  ++E
Sbjct: 301 IAGIDPSYLLPRAAKAAGISYKRLINMILE 330


>gi|320158619|ref|YP_004190997.1| D-alanine--D-alanine ligase [Vibrio vulnificus MO6-24/O]
 gi|319933931|gb|ADV88794.1| D-alanine-D-alanine ligase [Vibrio vulnificus MO6-24/O]
          Length = 331

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 71/255 (27%), Positives = 120/255 (47%), Gaps = 15/255 (5%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D     +HG  GE G +Q++ EL  IPY   G  AS+ S +K+ SK    + G+P  P +
Sbjct: 77  DFIVPCIHGFPGETGDIQSLFELASIPYLGCGPEASSNSFNKITSKLWYDAIGIPNTPYL 136

Query: 112 LVNRFTMDSQHLISPPY------VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
            +     +S  L    +       +K  + GSS+G   +   + +   + ++  ++H  Q
Sbjct: 137 FLTENNEESHQLSREAFDKWGKLFVKAARQGSSVGCYSVTNIEQLSDAIDKAFGFSH--Q 194

Query: 166 LLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYS--SLNSTHVLPAKI 219
           +L+E+ V   EL       +  L ++   EI  P   FYSY+ KYS  S + T V    +
Sbjct: 195 VLVEKAVKPRELEVSAYEMNGQLHISKPGEIIAPDGAFYSYDEKYSAGSHSITEVEAKNL 254

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279
                  +Q+ +    + +  R +SR DF       +++  E+N  PGMT +S+FP+M  
Sbjct: 255 TEQQLATIQQCSEKVFRQMNLRHLSRIDFFLTS-EGEIYLNEVNTFPGMTKISMFPKMLQ 313

Query: 280 YAGYSFRELLLWMVE 294
           + G+ F E L   +E
Sbjct: 314 HNGHKFHEFLADCIE 328


>gi|219685886|ref|ZP_03540692.1| D-alanine--D-alanine ligase [Borrelia garinii Far04]
 gi|219672585|gb|EED29618.1| D-alanine--D-alanine ligase [Borrelia garinii Far04]
          Length = 287

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 71/284 (25%), Positives = 135/284 (47%), Gaps = 50/284 (17%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAG-FKVSQIDVDRSVGL--------------- 44
           + ++ GG+S E E+S  S  +   AL D   + +  + +D+  G+               
Sbjct: 5   LMLIFGGVSFEHEISCKSAYSIYLALLDLNKYNIYPVYIDKCTGIWYLLDSVSDPPKLID 64

Query: 45  --VL---------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87
             VL                +L+ D+ F V+HG  GEDG +Q +L++++IP   +GI+ S
Sbjct: 65  IDVLPIVSLLPGIGIFSNNKNLEIDVVFPVVHGRTGEDGAIQGVLKVMDIPCIGAGIIGS 124

Query: 88  ALSMDKMRSKQVVSSCGVPVCPSILVNR--FTMDSQHL-------ISPPYVIKPLKGGSS 138
           A+S +K   K ++ S  +P+ P I   +  + +D + +       +  P ++KP   GSS
Sbjct: 125 AISSNKYFCKLLLKSFNIPLVPFIGFRQHDYLLDKEEIKRNVREALGYPVIVKPAVLGSS 184

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV---TEIAVP 195
           +GI V   +  I  +     +  +   +LIE++++  E+ C V+G+  + +    EI V 
Sbjct: 185 IGINVAYSESQI--EFFIEEALKYDLTILIEKFIEAREIECSVIGNEKIKIFSPGEIVVQ 242

Query: 196 KSDFYSYELKYSSLNSTHV---LPAKIPLDIYKEVQRLAFLAHQ 236
              FY Y+ KYS +    +   +PA++  +    ++  AFL ++
Sbjct: 243 DFIFYDYDAKYSVIPGNSIIFNIPAQLETNQLLSIKEYAFLVYK 286


>gi|326693128|ref|ZP_08230133.1| D-alanyl-alanine synthetase A [Leuconostoc argentinum KCTC 3773]
          Length = 377

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 93/335 (27%), Positives = 152/335 (45%), Gaps = 58/335 (17%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAG------FKVSQ----IDVDRSVG-LVLAHL 49
           +A+L GG SSE +VS  S +    A+E +G      F ++Q    +D + S   L L   
Sbjct: 6   VALLFGGNSSEHDVSKRSAQNYYQAIEASGKYDITVFAIAQNGYFLDPESSKRVLALEDE 65

Query: 50  KP---------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
           +P                           D+ F V+HGN GEDG +Q +  LL  P+  +
Sbjct: 66  QPIVDAFMAKVDTTDPLARISALREAGDFDIFFPVVHGNLGEDGTLQGLFRLLNKPFVGA 125

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH------LISPPYVIKPLKGG 136
            +   A+S DK  +K++++   +     ++++  T                  +K    G
Sbjct: 126 PLRGHAVSFDKAMTKELLTVNNIRNTNYVVLDEKTAKDWTWDKVVATFGDVVFVKAANQG 185

Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEI--- 192
           SS+GI      +     L  S  +++  ++L+EQ V G  EL  GV+G+    V+EI   
Sbjct: 186 SSVGISRATTAEEFAAALADSFQYDY--KVLVEQAVKGPRELEVGVIGNDEPLVSEIGAH 243

Query: 193 AVPK----SDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           AVP       +Y Y  K+   ++    +PAK+P  I +EV+ +A  A++ +  RG +R D
Sbjct: 244 AVPNQGDGDGWYDYNNKFVDNSAVEFEIPAKLPDAITQEVKDMALKAYKVLNLRGEARMD 303

Query: 248 FLFDPLSRKVFWL-EINVQPGMTPVSIFPEMAAYA 281
           FL D     V +L E N  PG T +S+F  +  Y+
Sbjct: 304 FLLD--ENDVPYLGEPNTLPGFTNMSLFKRLWDYS 336


>gi|325919672|ref|ZP_08181675.1| ATP-grasp enzyme, D-alanine-D-alanine ligase [Xanthomonas gardneri
           ATCC 19865]
 gi|325549835|gb|EGD20686.1| ATP-grasp enzyme, D-alanine-D-alanine ligase [Xanthomonas gardneri
           ATCC 19865]
          Length = 198

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 57/170 (33%), Positives = 94/170 (55%), Gaps = 5/170 (2%)

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P ++KP   GSS+GI  +     +   ++ ++ ++    LL+EQ ++G ELT  V+G
Sbjct: 29  IGLPVIVKPANEGSSVGISRVFDQAQLEEAVVLAARYDGA--LLMEQLIEGDELTVAVLG 86

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           + +L    I VPK  +Y Y  KY + ++ ++ P  +  D   ++++LA  A +A G RG 
Sbjct: 87  EVALPSIRI-VPKGQWYDYNAKYVADDTQYLCPG-LEGDAETQIRQLALDAFRAAGARGW 144

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            R D + D  S +++ LE+N  PGMT  S+ P+ A   G  F E L+W V
Sbjct: 145 GRVDVMRDRASGQLYLLEVNTAPGMTSHSLVPKAARQLGIDFEE-LVWRV 193


>gi|268609111|ref|ZP_06142838.1| D-alanine--D-alanine ligase [Ruminococcus flavefaciens FD-1]
          Length = 357

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 72/258 (27%), Positives = 127/258 (49%), Gaps = 15/258 (5%)

Query: 50  KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109
           K D+ F V+ G  G DG +Q +L+L  IPY   G+LA+A  MDK     V+    +    
Sbjct: 96  KIDVVFPVVMGKHGADGTIQGLLDLSGIPYVGCGVLAAASCMDKSHIHMVMDDYDIATAD 155

Query: 110 -SILVNR--FTMDSQ-HLISP----PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN 161
             I+  R    +D + H I+     P ++KP K G+S G    K D    L      +++
Sbjct: 156 WRIITQREISEIDKRCHEIAGELGFPLIVKPAKSGTSAG--TGKADDLAQLIAAVKVAFS 213

Query: 162 HGDQLLIEQYVDGIELTCGVMG---DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
           + +++++E+YV G ++   V G     S  + EI  P   +   E+  S+ +   + PA 
Sbjct: 214 NDNKVVVEKYVSGRKMEAAVFGYDTPFSTYIGEILDPDRVYDPTEVNQSTGDGLKI-PAD 272

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278
           I  ++   ++  A  A++A+GC+G++R DF      R +   +I   PG+   S+FP++ 
Sbjct: 273 ISDELQASIRETAVKAYKAMGCKGLARLDFFLTDDGR-LLLNKIGTSPGLRKNSVFPKLM 331

Query: 279 AYAGYSFRELLLWMVEDA 296
            + G S  + +  ++E A
Sbjct: 332 EHMGISHEDFVDMLLEQA 349


>gi|27366728|ref|NP_762255.1| D-alanyl-alanine synthetase A [Vibrio vulnificus CMCP6]
 gi|32699442|sp|Q8D781|DDL_VIBVU RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|27358295|gb|AAO07245.1| D-alanine--D-alanine ligase [Vibrio vulnificus CMCP6]
          Length = 331

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 73/255 (28%), Positives = 121/255 (47%), Gaps = 15/255 (5%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D     +HG  GE G +Q++ EL  IPY   G  AS+ S +K+ SK    + G+P  P +
Sbjct: 77  DFIVPCIHGFPGETGDIQSLFELAGIPYLGCGPEASSNSFNKITSKLWYDAIGIPNTPYL 136

Query: 112 LVNRFTMDSQHLISPPY------VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
            +     +S  L    +       +K  + GSS+G   + K + +   + ++  ++H  Q
Sbjct: 137 FLTENNEESHQLSREAFDKWGKLFVKAARQGSSVGCYSVTKIEQLSDAIDKAFGFSH--Q 194

Query: 166 LLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYS--SLNSTHVLPAKI 219
           +L+E+ V   EL       +  L ++   EI  P   FYSY+ KYS  S + T V    +
Sbjct: 195 VLVEKAVKPRELEVSAYEMNGQLHISKPGEIIAPDGAFYSYDEKYSAGSHSITEVEAKNL 254

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279
                  +Q  +    + +  R +SR DF F     +++  E+N  PGMT +S+FP+M  
Sbjct: 255 TEQQLATIQLCSEKVFRQMNLRHLSRIDF-FLTSEGEIYLNEVNTFPGMTKISMFPKMLQ 313

Query: 280 YAGYSFRELLLWMVE 294
           + G+ F E L   +E
Sbjct: 314 HNGHKFHEFLADCIE 328


>gi|15618814|ref|NP_225100.1| muramate-Ala ligase & D-Ala-D-Ala ligase [Chlamydophila pneumoniae
           CWL029]
 gi|15836438|ref|NP_300962.1| muramate-Ala ligase/D-Ala-D-Ala ligase [Chlamydophila pneumoniae
           J138]
 gi|16752131|ref|NP_445498.1| UDP-N-acetylmuramate--alanine ligase/D-alanine--D-alanine ligase
           [Chlamydophila pneumoniae AR39]
 gi|6919933|sp|Q9Z701|MUDD_CHLPN RecName: Full=Bifunctional enzyme MurC/Ddl; Includes: RecName:
           Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase;
           Includes: RecName: Full=D-alanine--D-alanine ligase;
           AltName: Full=D-Ala-D-Ala ligase; AltName:
           Full=D-alanylalanine synthetase
 gi|4377225|gb|AAD19043.1| Muramate-Ala Ligase/D-Ala-D-Ala Ligase [Chlamydophila pneumoniae
           CWL029]
 gi|7189873|gb|AAF38741.1| UDP-N-acetylmuramate--alanine ligase/D-alanine--D-alanine ligase
           [Chlamydophila pneumoniae AR39]
 gi|8979279|dbj|BAA99113.1| muramate-Ala ligase/D-Ala-D-Ala ligase [Chlamydophila pneumoniae
           J138]
          Length = 809

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 90/338 (26%), Positives = 152/338 (44%), Gaps = 47/338 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS----VGLVLAHL------- 49
           + ++ GG S E ++SL S +  +  +    + VS   ++R      G    HL       
Sbjct: 454 IGLVCGGKSCEHDISLLSAQHVSKYISPEFYDVSYFIINRQGLWRTGKDFPHLIEETQGD 513

Query: 50  ------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSK 97
                       K D  F VLHG FGEDG +Q   E+L  PY    +  +A +MDK+ +K
Sbjct: 514 SPLSSEIASALAKVDCLFPVLHGPFGEDGTIQGFFEILGKPYAGPSLSLAATAMDKLLTK 573

Query: 98  QVVSSCGVPVCPSILVNRFTMDS------QHLI---SPPYVIKPLKGGSSLGIIVIKKDQ 148
           ++ S+ GVPV P   +N            Q+LI   S P ++K    GSS+GI +++  +
Sbjct: 574 RIASAVGVPVVPYQPLNLCFWKRNPELCIQNLIETFSFPMIVKTAHLGSSIGIFLVRDKE 633

Query: 149 SIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK-----SDFYSYE 203
            +   + ++  ++  D  + E  +   E+    +G +S     +A P      S F  Y+
Sbjct: 634 ELQEKISEAFLYD-TDVFVEESRLGSREIEVSCIGHSSSWYC-MAGPNERCGASGFIDYQ 691

Query: 204 LKYSSLNSTHVLPAKIPLDIYKE----VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
            KY   +          L + +E    V+ LA   ++A+  +G +R DF  D      +W
Sbjct: 692 EKY-GFDGIDCAKISFDLQLSQESLDCVRELAERVYRAMQGKGSARIDFFLDEEGN--YW 748

Query: 260 L-EINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           L E+N  PGMT  S F +   +AG++  +++   + DA
Sbjct: 749 LSEVNPIPGMTAASPFLQAFVHAGWTQEQIVDHFIIDA 786


>gi|209809421|ref|YP_002264959.1| D-alanyl-alanine synthetase A [Aliivibrio salmonicida LFI1238]
 gi|208010983|emb|CAQ81393.1| D-alanine--D-alanine ligase [Aliivibrio salmonicida LFI1238]
          Length = 343

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 87/323 (26%), Positives = 148/323 (45%), Gaps = 43/323 (13%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAG-FKVSQIDVD---------------RSVGLVL 46
           +L GG  +E EVSL S    A  L +   F+++ +++                RS   +L
Sbjct: 19  LLCGGSGTEHEVSLVSANYIAQQLSELNTFQITHLEIKDGSWFHIESGLKYELRSDKTLL 78

Query: 47  AHLKP----DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS 102
            + +     D     +HG  GE G +Q++L++  IPY      AS  S +K+ SK    +
Sbjct: 79  CNNEATAPVDYVVPCIHGYPGETGDIQSMLDMFSIPYLGCNAEASTNSFNKITSKLWYDA 138

Query: 103 CGVPVCPSILV--NRFTMDSQHLIS----PPYVIKPLKGGSSLGII-VIKKDQSIPLDLL 155
             +P  P + +  N  T   + L++        +K    GSS+G   V  K+Q +     
Sbjct: 139 LSIPNTPYLFLTENNQTTHDEALVAFDQWGSLFVKAACQGSSVGCYHVTSKEQVVE---A 195

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKY-SSLN 210
            ++++ + +Q+L+E+ V   EL       D  L  T   E+  P   FY+YE KY S  +
Sbjct: 196 VNNAFTYSEQVLVEKAVKPRELEVSAYEIDGELYTTLPGEVTAPDGAFYTYEEKYGSGSH 255

Query: 211 STHVLPAKI----PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
           ST  L AK      +++  +  R  F     +  + +SR DF       +++  E+N  P
Sbjct: 256 STTTLDAKNLTEEQIELINKYSRKVF---TQMKLKDLSRIDFFLTD-ENEIYLNEVNTFP 311

Query: 267 GMTPVSIFPEMAAYAGYSFRELL 289
           GMTP+S+FP++  + G+ F+  L
Sbjct: 312 GMTPISMFPKLLEHNGHCFKTFL 334


>gi|301513415|ref|ZP_07238652.1| D-alanine--D-alanine ligase [Acinetobacter baumannii AB058]
 gi|301596388|ref|ZP_07241396.1| D-alanine--D-alanine ligase [Acinetobacter baumannii AB059]
          Length = 137

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 51/118 (43%), Positives = 74/118 (62%), Gaps = 4/118 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-VDRSVGLVLAHLKPDLAFNVLH 59
           +AVL+GG S+ER VSL SG+A   AL  +G +    D  +RSV  ++ +   D AF VLH
Sbjct: 10  VAVLLGGKSAERAVSLDSGQAVLDALLRSGVQAEAFDPQNRSVTELVNY---DRAFIVLH 66

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117
           G  GEDG +Q +LE L IPYT +G+  SA+ MDK+++KQ+     +P  P  ++ + T
Sbjct: 67  GRGGEDGQIQGVLEWLNIPYTGTGVQGSAIGMDKVKTKQIWQGSDLPTAPYRIITKET 124


>gi|302672145|ref|YP_003832105.1| D-alanine-D-alanine ligase DdlA [Butyrivibrio proteoclasticus B316]
 gi|302396618|gb|ADL35523.1| D-alanine-D-alanine ligase DdlA [Butyrivibrio proteoclasticus B316]
          Length = 401

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 78/249 (31%), Positives = 115/249 (46%), Gaps = 39/249 (15%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV--CP 109
           D+AF ++HG   EDG +Q  L  L +P     +L+SA+ M+K   K V+   G+PV  C 
Sbjct: 101 DIAFPIVHGTNVEDGTLQGYLATLGLPVVGCDVLSSAVGMNKYVMKTVLKDNGIPVLDCK 160

Query: 110 SIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI--PLDLLQSSSWN 161
                    VN      +     P +IKPL  GSS+GI       ++   LDL     + 
Sbjct: 161 CYTWKDYEDVNALVEKIEAAFEYPVIIKPLNLGSSIGIKKASDRDALIEALDL----GFE 216

Query: 162 HGDQLLIEQYV-DGIELTCGVMGD---ASLDVTEIAVPKSDFYSYELKY----------- 206
              ++L+E  + D  E+ C V+GD   A     E  V   D  S+E KY           
Sbjct: 217 FSKKILVEPAISDLKEINCSVIGDYENAKASECEEPVNSDDILSFEDKYIGGAKGSAKGA 276

Query: 207 --------SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
                   +SL     +PA+I  +  +E++ +A  A + +GC GISR DF+ D  + KV+
Sbjct: 277 KTGGSKGMASLKRK--IPAEITPERREEIRTMAVDAFKCLGCSGISRIDFMIDKKTDKVY 334

Query: 259 WLEINVQPG 267
             EIN  PG
Sbjct: 335 LNEINTIPG 343


>gi|269302694|gb|ACZ32794.1| UDP-N-acetylmuramate--alanine ligase/D-alanine--D-alanine ligase
           [Chlamydophila pneumoniae LPCoLN]
          Length = 809

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 90/338 (26%), Positives = 152/338 (44%), Gaps = 47/338 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS----VGLVLAHL------- 49
           + ++ GG S E ++SL S +  +  +    + VS   ++R      G    HL       
Sbjct: 454 IGLVCGGKSCEHDISLLSAQHVSKYISPEFYDVSYFIINRQGLWRTGKDFPHLIEETQGD 513

Query: 50  ------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSK 97
                       K D  F VLHG FGEDG +Q   E+L  PY    +  +A +MDK+ +K
Sbjct: 514 SPLSSEIASALAKVDCLFPVLHGPFGEDGTIQGFFEILGKPYAGPSLSLAATAMDKLLTK 573

Query: 98  QVVSSCGVPVCPSILVNRFTMDS------QHLI---SPPYVIKPLKGGSSLGIIVIKKDQ 148
           ++ S+ GVPV P   +N            Q+LI   S P ++K    GSS+GI +++  +
Sbjct: 574 RIASAVGVPVVPYQPLNLCFWKRNPELCIQNLIETFSFPMIVKTAHLGSSIGIFLVRDKE 633

Query: 149 SIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK-----SDFYSYE 203
            +   + ++  ++  D  + E  +   E+    +G +S     +A P      S F  Y+
Sbjct: 634 ELQEKISEAFLYD-TDVFVEESRLGSREIEVSCIGHSSSWYC-MAGPNERCGASGFIDYQ 691

Query: 204 LKYSSLNSTHVLPAKIPLDIYKE----VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
            KY   +          L + +E    V+ LA   ++A+  +G +R DF  D      +W
Sbjct: 692 EKY-GFDGIDCAKISFDLQLSQESLDCVRELAERVYRAMQGKGSARIDFFLDEEGN--YW 748

Query: 260 L-EINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           L E+N  PGMT  S F +   +AG++  +++   + DA
Sbjct: 749 LSEVNPIPGMTAASPFLQAFVHAGWTQEQVVDHFIIDA 786


>gi|325921424|ref|ZP_08183280.1| ATP-grasp enzyme, D-alanine-D-alanine ligase [Xanthomonas gardneri
           ATCC 19865]
 gi|325548066|gb|EGD19064.1| ATP-grasp enzyme, D-alanine-D-alanine ligase [Xanthomonas gardneri
           ATCC 19865]
          Length = 199

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 57/170 (33%), Positives = 94/170 (55%), Gaps = 5/170 (2%)

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P ++KP   GSS+GI  +     +   ++ ++ ++    LL+EQ ++G ELT  V+G
Sbjct: 30  IGLPVIVKPANEGSSVGISRVFDQAQLEEAVVLAARYDGA--LLMEQLIEGDELTVAVLG 87

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           + +L    I VPK  +Y Y  KY + ++ ++ P  +  D   ++++LA  A +A G RG 
Sbjct: 88  EVALPSIRI-VPKGQWYDYNAKYVADDTQYLCPG-LEGDAETQIRQLALDAFRAAGARGW 145

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            R D + D  S +++ LE+N  PGMT  S+ P+ A   G  F E L+W V
Sbjct: 146 GRVDVMRDRASGQLYLLEVNTAPGMTSHSLVPKAARQLGIDFEE-LVWRV 194


>gi|90414751|ref|ZP_01222721.1| putative D-alanine-D-alanine ligase [Photobacterium profundum 3TCK]
 gi|90324196|gb|EAS40774.1| putative D-alanine-D-alanine ligase [Photobacterium profundum 3TCK]
          Length = 330

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 84/314 (26%), Positives = 143/314 (45%), Gaps = 35/314 (11%)

Query: 3   VLMGGISSEREVSLSSGKACASALE------------------DAGFKVSQIDVDRSVGL 44
           +L GG S+E EVSL S       L+                  D+   + Q+++DR++ +
Sbjct: 8   LLCGGGSAEHEVSLVSANYIEQQLQSIEGVSYTRVEMKTEGWFDSNNVLCQLNLDRTLQI 67

Query: 45  VLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCG 104
                  +     +HG  GE G +Q+ LE+  +PY      +S    +K+ +K    +  
Sbjct: 68  GDEKTPINYVIPCVHGYPGETGDLQSFLEMAGLPYLGCDAESSTNCFNKITTKLWFDALN 127

Query: 105 VPVCPSILVNRFTMDSQHLISPPY------VIKPLKGGSSLGII-VIKKDQSIPLDLLQS 157
           +P  P + ++     +  L +  +       IK    GSS+G   V  KD+   L    +
Sbjct: 128 IPNTPYVFLSENDDAAHELAAKAFDDWGKVFIKAASQGSSVGCYSVANKDE---LAEAVN 184

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVM--GDASL--DVTEIAVPKSDFYSYELKYS--SLNS 211
           +++ + +Q+LIE+ +   EL       GD  +     E+A P+  FYSYE KYS  S + 
Sbjct: 185 NAFTYSNQVLIEKTIKPRELEIAAYQYGDELVISKPGEVACPEDKFYSYEEKYSTDSHSV 244

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271
           T V    +  +  + ++  A  A   +  + +SR DF       ++   EIN  PGMTP+
Sbjct: 245 TTVEAENLTDEQVELIREYARKAFTQMKLKDLSRIDFFLSE-DNEILLNEINTFPGMTPI 303

Query: 272 SIFPEMAAYAGYSF 285
           S+FP+M  + G+SF
Sbjct: 304 SMFPKMLEHHGHSF 317


>gi|283468531|emb|CAP18811.1| putative D-ala D-ala ligase [Opitutus terrae PB90-1]
          Length = 241

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 68/232 (29%), Positives = 114/232 (49%), Gaps = 14/232 (6%)

Query: 68  VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPP 127
           +Q +L+   + Y     ++SAL+MDK  +K+  ++ G+ V P +            +   
Sbjct: 2   MQRLLDAAGMHYAGCDAVSSALTMDKTLTKETAAAKGIKVIPGVTFPAAKKPRPEQVIEQ 61

Query: 128 Y----VIKPLKGGSSLGIIVIKKDQSIP--LDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
           +    V+KP   GSS+G+ ++   + +   LD++Q+  W      +IE+ + G EL  GV
Sbjct: 62  FGERVVVKPNAEGSSVGLNLVGSREELTRVLDVIQNGRW------IIERRIFGRELAVGV 115

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241
           +   ++ V EI  PKS  Y Y  KY+   + ++ PA +   + +++Q  A  A  A GCR
Sbjct: 116 LNGRAMGVVEIR-PKSGVYDYASKYTKGMTNYLAPAPLDAALTQKIQAAAQTAFAACGCR 174

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
             +R DF+      +++ LEIN  PGM   S  P  A   G  F  L+  MV
Sbjct: 175 DYARVDFILGD-DHELYLLEINTHPGMKETSQLPMSARCEGIDFTALVKAMV 225


>gi|289432514|ref|YP_003462387.1| D-alanine--D-alanine ligase [Dehalococcoides sp. GT]
 gi|288946234|gb|ADC73931.1| D-alanine--D-alanine ligase [Dehalococcoides sp. GT]
          Length = 338

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 83/294 (28%), Positives = 145/294 (49%), Gaps = 19/294 (6%)

Query: 20  KACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG--NF-GEDGLVQAILELLE 76
           +A  +AL  AG  V ++   +     +   K DL FN+  G  N+   +  +  +LE+L+
Sbjct: 34  EAITNALTAAGHAVYRLGGGKEFLRKVQEHKLDLVFNISEGLGNYRSREAQIPGVLEMLD 93

Query: 77  IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF----TMDSQHLISPPYVIKP 132
           IPYT S     A+ +DK  +K++V+  GV      LV+      T+D      P + +KP
Sbjct: 94  IPYTGSDPQTLAICLDKPLTKKLVAGAGVKTAKWQLVSNCEELSTIDWSDFPLPAF-LKP 152

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSW--NHGDQLLIEQYVDGIELTCGVMGDASLDVT 190
              GSS G+    + +S    +  ++     +   +L+E++++G E+T GV+G+    V 
Sbjct: 153 ACEGSSKGVRFASRAESTDEIMRMATELLTTYNQPVLVEEFINGDEITVGVIGNDKPKVL 212

Query: 191 EIA--VPKS--DF--YSYELKYSSLNST-HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
            I   VPK+  D+  YS E+K +      + +PA +P      +++    A++ + C  +
Sbjct: 213 GIMRIVPKTKADYFVYSIEIKRNWRQMVEYEVPAALPAKTLAHIEKATLDAYRVLECHDL 272

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVS-IFPEMAAYAGYSFRELLLWMVEDA 296
            R DF   P     ++LE+N  PG+ PVS   P MA+  G S  +L+L ++  A
Sbjct: 273 CRMDFRVSP-DGTPYFLEVNPLPGLNPVSGDLPIMASKLGISHADLVLEILNTA 325


>gi|229826927|ref|ZP_04452996.1| hypothetical protein GCWU000182_02311 [Abiotrophia defectiva ATCC
           49176]
 gi|229788545|gb|EEP24659.1| hypothetical protein GCWU000182_02311 [Abiotrophia defectiva ATCC
           49176]
          Length = 174

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 52/168 (30%), Positives = 91/168 (54%), Gaps = 4/168 (2%)

Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186
           P ++KP  G SS+G+ +    Q     L+++ S+   +Q+++EQ++ G E +  V+   +
Sbjct: 4   PVIVKPCCGDSSVGVCIAHNQQEYKAALMEAFSYE--NQVVVEQFITGREFSVAVVDGKA 61

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRS 246
             V EIA P   FY Y+ KYS+ +     PA +   + KE+Q  A   ++A+  +  +R 
Sbjct: 62  YPVVEIA-PLEGFYDYKNKYSAGSCVETCPADLSASLTKEMQMYAEKGYEALNLQAYARL 120

Query: 247 DFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           DFL +     ++ LE N  PGMTP S+ P+ A   G ++ +L   ++E
Sbjct: 121 DFLMEE-DGSMYCLEANTLPGMTPTSLIPQEARVIGMNYPQLCEKLIE 167


>gi|224368436|ref|YP_002602599.1| DdlB2 [Desulfobacterium autotrophicum HRM2]
 gi|223691152|gb|ACN14435.1| DdlB2 [Desulfobacterium autotrophicum HRM2]
          Length = 332

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 80/299 (26%), Positives = 144/299 (48%), Gaps = 21/299 (7%)

Query: 15  SLSSGKACASALEDAGFKVSQI-DVDRSVGLVLAHLKPDLAFNV---LHGNFGEDGLVQA 70
           S+ + +A  + L+  G +  +I +  R    ++   + DL FN+   LHG  G +  + A
Sbjct: 28  SVETIEAIETTLQGLGHETRRIGNAIRLTERLVQGERWDLVFNIAEGLHG-IGREAQIPA 86

Query: 71  ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL-ISPPYV 129
           IL+L  IPYT S  +  A+++ K  +K ++   G+      + N    D+ +L   PP+ 
Sbjct: 87  ILDLYNIPYTFSDPMVMAVTLHKGMTKHIIRDAGLATADFKVANS-ARDAWNLPFDPPFF 145

Query: 130 IKPLKGGSSLGII---VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD-- 184
           +KP+  G+ +GI    ++K    +P  + Q         +LIE+++ G E T G++G   
Sbjct: 146 VKPVAEGTGMGITAKSLVKNALDLP-GVCQELVEQFHQPVLIEEFLTGREFTVGIVGTGT 204

Query: 185 -----ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAI 238
                 ++++  I+  K + YS+E K    +    LP     D + + V+ LA  A + +
Sbjct: 205 RAQVMGTMEIIVISSKKDEVYSFENKEGWKSKVQYLPLSPGTDPLIQAVEDLALSAWKVL 264

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTP-VSIFPEMAAYAGYSFRELLLWMVEDA 296
           GCR   R D   D   R  F +E+N   G+ P  S  P +  + G S+ +L+  ++E A
Sbjct: 265 GCRDGGRIDIRCDAAGRPSF-IEVNPLAGLRPEYSDLPIVCQFFGTSYVQLIELILESA 322


>gi|323144949|ref|ZP_08079509.1| D-ala D-ala ligase N-terminal domain protein [Succinatimonas hippei
           YIT 12066]
 gi|322415228|gb|EFY06002.1| D-ala D-ala ligase N-terminal domain protein [Succinatimonas hippei
           YIT 12066]
          Length = 331

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 69/252 (27%), Positives = 128/252 (50%), Gaps = 15/252 (5%)

Query: 58  LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117
           +HG  GE G +Q+ LE+  IPY      AS    +K+ +K  +++  +P  P ++V R  
Sbjct: 79  IHGVPGETGDIQSFLEIFNIPYIGCKSEASHNCFNKITTKLYLTALNIPNTPFLIVPRQD 138

Query: 118 MDSQHLISPPY------VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
             S+      +       +K    GSS+G   + K + +   ++++ +++  + ++IE+ 
Sbjct: 139 ELSKANALKAFDSWQDVYVKAASQGSSIGCYHVTKKEDLWDSVVEAFTFS--EDVIIEKT 196

Query: 172 VDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYS--SLNSTHVLPAKIPLDIYK 225
           +   EL C     D ++ +T   EI +P + FY+++ KYS  S + T V P  +  +I +
Sbjct: 197 IKHRELECAAYEIDGNIYITNPGEIIMPDNLFYTFDEKYSKDSGSVTTVEPQNLSDEIKQ 256

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285
            ++  A  A+  +  R +SR DF       ++   EIN  PGMTP+S+FP++  + G+  
Sbjct: 257 MIRDYARKAYLGLKLRDLSRIDFFLSD-HNEIIINEINTFPGMTPISMFPKLLEHNGHQM 315

Query: 286 RELLLWMVEDAS 297
            E L   +E A+
Sbjct: 316 TEFLRQAIERAA 327


>gi|212635560|ref|YP_002312085.1| D-alanyl-alanine synthetase A [Shewanella piezotolerans WP3]
 gi|226729272|sp|B8CMV8|DDL_SHEPW RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|212557044|gb|ACJ29498.1| D-alanine--D-alanine ligase [Shewanella piezotolerans WP3]
          Length = 332

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 72/253 (28%), Positives = 120/253 (47%), Gaps = 20/253 (7%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D A   +HG  GE G +Q+  EL+ +PY      AS    +K+ +K   S+  +P  P +
Sbjct: 79  DFAIPCIHGFPGETGDIQSYFELINLPYFGCKAEASRNCFNKITAKMWFSALNIPNTPYL 138

Query: 112 LVNRFTMDSQHLISPPYV------IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
            +N  +  S    +   V      +K    GSS+G   I   + +   L Q  ++ + D 
Sbjct: 139 FLNEMSDVSIEQATNALVNWGSIFVKAASQGSSVGCYRIDNQEDVASTLAQ--AFTYSDY 196

Query: 166 LLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPL 221
           +++E+ +   EL   V   D  +  T   E+    ++FY+++ KY++ +       ++  
Sbjct: 197 VIVEKTISARELEVAVYEIDGEIVATVPGEVICSSNNFYTFDEKYAANSKAQT---QVVA 253

Query: 222 DIYKEVQRL----AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
           DI KEV  L    A  A + +  R +SR DF       +V   EIN  PG+TP+S+FP+M
Sbjct: 254 DISKEVSDLIRQYAISAFKGMKLRHLSRIDFFLTD-DGEVLLNEINTFPGLTPISMFPKM 312

Query: 278 AAYAGYSFRELLL 290
               G+SF + LL
Sbjct: 313 LQNHGHSFPDYLL 325


>gi|282897350|ref|ZP_06305352.1| D-ala D-ala ligase [Raphidiopsis brookii D9]
 gi|281198002|gb|EFA72896.1| D-ala D-ala ligase [Raphidiopsis brookii D9]
          Length = 336

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 80/286 (27%), Positives = 137/286 (47%), Gaps = 14/286 (4%)

Query: 24  SALEDAGFKVSQIDVDRSVGLVLAHL-KPDLAFNVLHGNFGE--DGLVQAILELLEIPYT 80
           + L D G +V +I     +   L +  + DL FN+  G  G   +  V A+ EL +  YT
Sbjct: 39  NTLNDLGHQVERIGNGGELTRKLVNGDRWDLVFNIAEGIKGRSREAQVPAVCELFDQAYT 98

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLG 140
            S  L  AL++DK  +K++V   G+P  P I++N     +   +  P   KPL  GSS G
Sbjct: 99  FSDPLTCALTLDKALTKRIVRDRGLPTAPFIVINNIVEIANINLPLPLFCKPLSEGSSKG 158

Query: 141 II--VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS-------LDVTE 191
           I    + KD++   ++ Q+        +L+E ++ G E+T G++G+ S       ++V  
Sbjct: 159 ITGQSLVKDKAELFNICQTLYNQFQQPILVETFLPGREITVGIIGNGSQAKVVGIMEVIF 218

Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
               ++D Y+   K   L+         P  +  + ++LA   +  +GCR  +R D   D
Sbjct: 219 TDKAETDSYTTLNKQEYLDRIAYQLITNPEPLAIQAEQLALEVYYLLGCRDAARLDLRCD 278

Query: 252 PLSRKVFWLEINVQPGMTPV-SIFPEMAAYAGYSFRELLLWMVEDA 296
             +  + +LEIN  PG+  + S  P M   AG S+ E++  +V+ A
Sbjct: 279 A-NGVLHFLEINPLPGLDYIYSDLPIMGRLAGISYTEMVNAIVDAA 323


>gi|147669247|ref|YP_001214065.1| D-alanine--D-alanine ligase [Dehalococcoides sp. BAV1]
 gi|146270195|gb|ABQ17187.1| D-alanine--D-alanine ligase [Dehalococcoides sp. BAV1]
          Length = 338

 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 83/294 (28%), Positives = 144/294 (48%), Gaps = 19/294 (6%)

Query: 20  KACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG--NF-GEDGLVQAILELLE 76
           +A  +AL  AG  V ++   +     +   K DL FN+  G  N+   +  +  +LE+L+
Sbjct: 34  EAITNALTAAGHAVYRLGGGKEFLRKVQEQKLDLVFNISEGLGNYRSREAQIPGVLEMLD 93

Query: 77  IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF----TMDSQHLISPPYVIKP 132
           IPYT S     A+ +DK  +K++V+  GV      LV+      T+D      P + +KP
Sbjct: 94  IPYTGSDPQTLAICLDKPLTKKLVAGAGVKTAKWQLVSNCEELSTIDWSDFPLPAF-LKP 152

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSW--NHGDQLLIEQYVDGIELTCGVMGDASLDVT 190
              GSS G+    + +S    +  ++     +   +L+E++++G E+T GV+G+    V 
Sbjct: 153 ACEGSSKGVRFASRAESTDEIMRMATELLTTYNQPVLVEEFINGDEITVGVIGNDKPKVL 212

Query: 191 EIA--VPKS--DF--YSYELKYSSLNST-HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
            I   VPK+  D+  YS E+K +      + +PA +P      +++    A++ + C  +
Sbjct: 213 GIMRIVPKTKADYFVYSIEIKRNWRQMVEYEVPAALPAKTLARIEKATLDAYRVLECHDL 272

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVS-IFPEMAAYAGYSFRELLLWMVEDA 296
            R DF   P     ++LE+N  PG+ PVS   P MA+  G S  +L L ++  A
Sbjct: 273 CRMDFRVSP-DGTPYFLEVNPLPGLNPVSGDLPIMASKLGISHADLALEILNTA 325


>gi|283781146|ref|YP_003371901.1| D-alanine--D-alanine ligase [Pirellula staleyi DSM 6068]
 gi|283439599|gb|ADB18041.1| D-alanine--D-alanine ligase [Pirellula staleyi DSM 6068]
          Length = 342

 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 82/261 (31%), Positives = 128/261 (49%), Gaps = 34/261 (13%)

Query: 52  DLAFNVLHG--NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109
           DL  N+  G    G +  V AIL++  IPYT S  L  +L++ K  +KQV+++ G+P  P
Sbjct: 66  DLVLNIAEGIEGMGREAQVPAILDVYGIPYTFSDPLVMSLTLHKGLTKQVLAAAGLPTAP 125

Query: 110 SILVNRFTMDSQHLISP-PYVIKPLKGGSSLGIIVIKKDQS------IPLDLLQSSSWNH 162
             ++++   D + L  P P   KP+  G+S G+  + K  S      I   LL+     H
Sbjct: 126 FAVISKLE-DLEGLTLPYPLFAKPIAEGTSKGVTSLSKVTSPEALRAICEHLLR----EH 180

Query: 163 GDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTH----- 213
              +L+E Y+DG E T G++G+      L   EI + +SD  S ++ Y+  N  +     
Sbjct: 181 QQSVLVETYLDGREFTTGLLGEGVSTRVLGSLEIKL-RSD--SDQVGYTYRNKENCEELI 237

Query: 214 ----VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
               + PA  PL   KEV+ L+    + +GCR   R D   D L  K + LE+N   G+ 
Sbjct: 238 IYDLIRPADDPL--VKEVEALSLATWKTLGCRDAGRVDIRCDSLG-KPYLLEVNPLAGLH 294

Query: 270 PV-SIFPEMAAYAGYSFRELL 289
           P  S  P +A   G ++ EL+
Sbjct: 295 PEHSDLPMLATKIGMTYTELI 315


>gi|73748467|ref|YP_307706.1| D-ala D-alanine ligase [Dehalococcoides sp. CBDB1]
 gi|73660183|emb|CAI82790.1| D-ala D-alanine ligase [Dehalococcoides sp. CBDB1]
          Length = 338

 Score = 92.8 bits (229), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 83/294 (28%), Positives = 144/294 (48%), Gaps = 19/294 (6%)

Query: 20  KACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG--NF-GEDGLVQAILELLE 76
           +A  ++L  AG  V ++   +     +   K DL FN+  G  N+   +  +  +LE+L+
Sbjct: 34  EAITNSLTAAGHAVYRLGGGKEFLRKVQEQKLDLVFNISEGLGNYRSREAQIPGVLEMLD 93

Query: 77  IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF----TMDSQHLISPPYVIKP 132
           IPYT S     A+ +DK  +K++V+  GV      LV+      T+D      P + +KP
Sbjct: 94  IPYTGSDPQTLAICLDKPLTKKLVAGAGVKTAKWQLVSNCEELSTIDWSDFPLPAF-LKP 152

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSW--NHGDQLLIEQYVDGIELTCGVMGDASLDVT 190
              GSS G+    + +S    +  ++     +   +L+E++++G E+T GV+G+    V 
Sbjct: 153 ACEGSSKGVRFASRAESTDEIMRMATELLTTYNQPVLVEEFINGDEITVGVIGNDKPKVL 212

Query: 191 EIA--VPKS--DF--YSYELKYSSLNST-HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
            I   VPK+  D+  YS E+K +      + +PA +P      +++    A++ + C  +
Sbjct: 213 GIMRIVPKTKADYFVYSIEIKRNWRQMVEYEVPAALPAKTLARIEKATLDAYRVLECHDL 272

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVS-IFPEMAAYAGYSFRELLLWMVEDA 296
            R DF   P     F LE+N  PG+ PVS   P MA+  G S  +L+L ++  A
Sbjct: 273 CRMDFRVSPDGTPYF-LEVNPLPGLNPVSGDLPIMASKLGISHADLVLEILNTA 325


>gi|327485602|gb|AEA80008.1| D-alanine--D-alanine ligase [Vibrio cholerae LMA3894-4]
          Length = 305

 Score = 92.8 bits (229), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 90/321 (28%), Positives = 141/321 (43%), Gaps = 55/321 (17%)

Query: 3   VLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDVDR----SVGLVLAHLKP------ 51
           +L GG SSE E+SL S       LE    F V ++++ +    S    L +L        
Sbjct: 8   LLCGGGSSEHEISLVSANYIQQQLELTPEFHVIRVEMKKEGWFSEQGALVYLDTNSATLN 67

Query: 52  --------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103
                   D     +HG  GE G +Q++LEL  IPY   G  ASA S +K+ SK    + 
Sbjct: 68  SDKASYPIDFVVPCIHGFPGETGDIQSMLELAGIPYLGCGPEASANSFNKITSKLWYDAL 127

Query: 104 GVPVCPSILVNRFTMDSQHLISPPY------VIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
           G+P  P + + + T  S       +       +K  + GSS+G   +  +          
Sbjct: 128 GIPNTPYLFLTQNTPSSIEKAKQAFGHWGSIFVKAARQGSSVGCYKVTTE---------V 178

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYS-SLNSTHVLP 216
           S++    +L I +                    E+  P+  FYSYE KYS + ++  VL 
Sbjct: 179 SAYEMNGKLYISK------------------PGEVIAPEGTFYSYEEKYSANSHARTVLE 220

Query: 217 AKIPLDIYKE-VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275
           A+   + +KE +Q  A      +  R +SR DF F     +++  E+N  PGMTP+S+FP
Sbjct: 221 AENLTEKHKELIQTYAERVFIHMKLRHLSRIDF-FLTQEGQIYLNEVNTFPGMTPISMFP 279

Query: 276 EMAAYAGYSFRELLLWMVEDA 296
           +M  + G+ F E L+  V + 
Sbjct: 280 KMLEHNGHRFSEFLVQCVTNT 300


>gi|37676445|ref|NP_936841.1| D-alanyl-alanine synthetase A [Vibrio vulnificus YJ016]
 gi|39930817|sp|Q7ME85|DDL_VIBVY RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|37200987|dbj|BAC96811.1| D-alanine-D-alanine ligase [Vibrio vulnificus YJ016]
          Length = 331

 Score = 92.8 bits (229), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 91/325 (28%), Positives = 146/325 (44%), Gaps = 36/325 (11%)

Query: 3   VLMGGISSEREVSLSSGKACASAL---EDAGFKVSQID----VDRSVGLVL--AHLKP-- 51
           +L GG SSE E+SL S +     L   E+      +I      D+   LV    H K   
Sbjct: 7   LLCGGGSSEHEISLLSSEYLQQQLGLIENVNVLKVEIKNEGWFDQKERLVYLDIHTKSVK 66

Query: 52  --------DLAFNV--LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
                   D+ F V  +HG  GE G +Q++ EL  IPY   G  AS+ S +K+ SK    
Sbjct: 67  SDEFNESIDIDFIVPCIHGFPGETGDIQSLFELAGIPYLGCGPEASSNSFNKITSKLWYD 126

Query: 102 SCGVPVCPSILVNRFTMDSQHLISPPY------VIKPLKGGSSLGIIVIKKDQSIPLDLL 155
           + G+P  P + +     +S  L    +       +K  + GSS+G   +   + +   + 
Sbjct: 127 AIGIPNTPYLFLTENNEESHQLSREAFDKWGKLFVKAARQGSSVGCYSVTNIEQLSDAID 186

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYS--SL 209
           ++  ++H  Q+L+E+ V   EL       +  L ++   EI  P   FYSY+ KYS  S 
Sbjct: 187 KAFGFSH--QVLVEKAVKPRELEVSAYEMNGQLHISKPGEIIAPDGAFYSYDEKYSAGSH 244

Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
           + T V    +       +Q  +    + +  R +SR DF       +++  E+N  PGMT
Sbjct: 245 SITEVEAKNLTEQQLATIQLCSEKVFRQMNLRHLSRIDFFLTS-EGEIYLNEVNTFPGMT 303

Query: 270 PVSIFPEMAAYAGYSFRELLLWMVE 294
            +S+FP+M  + G+ F E L   +E
Sbjct: 304 KISMFPKMLQHNGHKFHEFLADCIE 328


>gi|269104486|ref|ZP_06157182.1| D-alanine--D-alanine ligase [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|268161126|gb|EEZ39623.1| D-alanine--D-alanine ligase [Photobacterium damselae subsp.
           damselae CIP 102761]
          Length = 287

 Score = 92.8 bits (229), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 78/286 (27%), Positives = 138/286 (48%), Gaps = 23/286 (8%)

Query: 28  DAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87
           +A   + Q+++DR++         +     +HG  GE G +Q+ L++  +PY   G  AS
Sbjct: 8   NANNALCQLNLDRTLQTGDTKQIINYVIPCVHGFPGETGDLQSFLDMAGLPYLGCGAEAS 67

Query: 88  ALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPY------VIKPLKGGSSLGI 141
               +K+ +K    +  +P  P + ++    D+    S  +       +K    GSS+G 
Sbjct: 68  RNCFNKITTKLWFDALDIPNTPYVFLSENNEDAHTKASEAFDKWGKVFVKAASQGSSVGC 127

Query: 142 IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM--GDASLDVT---EIAVPK 196
             +    +  L  + + ++ + DQ+LIE+ +   EL       GD  L +T   E++ P 
Sbjct: 128 YSVTDKAN--LAAVVNDAFGYSDQVLIEKSIKPRELEIAAYQYGD-ELIITKPGEVSCPD 184

Query: 197 SDFYSYELKYSS-LNSTHVLPA----KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
             FYSYE KYSS  +ST  + A    +  ++  +E  R AF+ H  +  + +SR DF   
Sbjct: 185 DKFYSYEEKYSSDSHSTTAVEATNLSEEQVEALRECARKAFV-HMKL--KDLSRIDFFLS 241

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
               ++   EIN  PGMTP+S+FP+M    G+SF + +   ++ A+
Sbjct: 242 E-DNEILLNEINTFPGMTPISMFPKMLENHGHSFTKFIEQAIKSAA 286


>gi|54302606|ref|YP_132599.1| D-alanyl-alanine synthetase A [Photobacterium profundum SS9]
 gi|46916030|emb|CAG22799.1| putative D-alanine-D-alanine ligase [Photobacterium profundum SS9]
          Length = 330

 Score = 92.4 bits (228), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 86/326 (26%), Positives = 148/326 (45%), Gaps = 35/326 (10%)

Query: 3   VLMGGISSEREVSLSSGKACASALE------------------DAGFKVSQIDVDRSVGL 44
           +L GG S+E EVSL S       L+                  DA   + Q+++DR++ +
Sbjct: 8   LLCGGGSAEHEVSLVSANYIEQQLKNIEGVSYTRVEMKTEGWFDANNALCQLNLDRTLQV 67

Query: 45  VLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCG 104
                  +     +HG  GE G +Q+ LE+  +PY      +S    +K+ +K    +  
Sbjct: 68  GDDKTPINYVIPCVHGYPGETGDLQSFLEMAGLPYLGCDAESSTNCFNKITTKLWFDALN 127

Query: 105 VPVCPSILVNRFTMDSQHLISPPY------VIKPLKGGSSLGII-VIKKDQSIPLDLLQS 157
           +P  P I ++     +  L +  +       +K    GSS+G   V  KD+   L    +
Sbjct: 128 IPNTPYIFLSENDAAAHELAAKAFDDWGKVFVKAASQGSSVGCYSVANKDE---LAEAVN 184

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVM--GDASL--DVTEIAVPKSDFYSYELKYS--SLNS 211
           +++ + +Q+LIE+ +   EL       GD  +     E+A P+  FYSYE KYS  S + 
Sbjct: 185 NAFTYSNQVLIEKTIKPRELEIAAYQYGDELVISKPGEVACPEDKFYSYEEKYSTDSHSV 244

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271
           T V    +  +  + ++  A  A   +  + +SR DF       ++   EIN  PGMTP+
Sbjct: 245 TTVEAENLTDEQVELIREYALKAFTQMKLKDLSRIDFFLSE-DNEILLNEINTFPGMTPI 303

Query: 272 SIFPEMAAYAGYSFRELLLWMVEDAS 297
           S+FP+M  + G+SF   +   ++ A+
Sbjct: 304 SMFPKMLEHHGHSFAGFIETAIKTAA 329


>gi|33242268|ref|NP_877209.1| UDP-N-acetylmuramate--alanine ligase [Chlamydophila pneumoniae
           TW-183]
 gi|33236779|gb|AAP98866.1| UDP-N-acetylmuramate--alanine ligase [Chlamydophila pneumoniae
           TW-183]
          Length = 809

 Score = 92.4 bits (228), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 90/338 (26%), Positives = 151/338 (44%), Gaps = 47/338 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS----VGLVLAHL------- 49
           + ++ GG S E ++SL S +  +  +    + VS   ++R      G    HL       
Sbjct: 454 IGLVCGGKSCEHDISLLSAQHVSKYISPEFYDVSYFIINRQGLWRTGKDFPHLIEETQGD 513

Query: 50  ------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSK 97
                       K D  F VLHG FGEDG +Q   E+L  PY       +A +MDK+ +K
Sbjct: 514 SPLSSEIASALAKVDCLFPVLHGPFGEDGTIQGFFEILGKPYAGPSPSLAATAMDKLLTK 573

Query: 98  QVVSSCGVPVCPSILVNRFTMDS------QHLI---SPPYVIKPLKGGSSLGIIVIKKDQ 148
           ++ S+ GVPV P   +N            Q+LI   S P ++K    GSS+GI +++  +
Sbjct: 574 RIASAVGVPVVPYQPLNLCFWKRNPELCIQNLIETFSFPMIVKTAHLGSSIGIFLVRDKE 633

Query: 149 SIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK-----SDFYSYE 203
            +   + ++  ++  D  + E  +   E+    +G +S     +A P      S F  Y+
Sbjct: 634 ELQEKISEAFLYD-TDVFVEESRLGSREIEVSCIGHSSSWYC-MAGPNERCGASGFIDYQ 691

Query: 204 LKYSSLNSTHVLPAKIPLDIYKE----VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
            KY   +          L + +E    V+ LA   ++A+  +G +R DF  D      +W
Sbjct: 692 EKY-GFDGIDCAKISFDLQLSQESLDCVRELAERVYRAMQGKGSARIDFFLDEEGN--YW 748

Query: 260 L-EINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           L E+N  PGMT  S F +   +AG++  +++   + DA
Sbjct: 749 LSEVNPIPGMTAASPFLQAFVHAGWTQEQIVDHFIIDA 786


>gi|126656685|ref|ZP_01727899.1| D-alanyl-D-alanine ligase A [Cyanothece sp. CCY0110]
 gi|126621905|gb|EAZ92613.1| D-alanyl-D-alanine ligase A [Cyanothece sp. CCY0110]
          Length = 340

 Score = 92.4 bits (228), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 81/261 (31%), Positives = 126/261 (48%), Gaps = 29/261 (11%)

Query: 57  VLHGNFGEDGLVQ--AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
           VL   F   G+ Q  ++ +LL IPY  +     AL+ +K ++K +V S GV V    L++
Sbjct: 86  VLPQMFCIPGMTQYRSLFDLLNIPYLGNTAELMALTANKAKAKAIVRSMGVKVPYGELLH 145

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD- 173
           +   D+ +L  PP VIKP    +SLG+ ++K       D     ++ + DQ+L+E+Y++ 
Sbjct: 146 K--GDTPNL-RPPVVIKPDNSDNSLGVTLVKTMDEC--DTALEKAFEYADQVLVEEYIEL 200

Query: 174 GIELTCGVMGDA----SLDVTEIAV--------------PKSDFYSYELKYSSLNSTHVL 215
           G E+ CG +       SL + E AV               K D  S EL Y++ +     
Sbjct: 201 GREVRCGTIVKEGELISLPLEEYAVNTENNPIRNHEDKLKKDD--SGELTYAAKDKKKAW 258

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275
                  + + VQ +A   HQA+GCR  S  DF  DP  +  F LE  +    +P S+ P
Sbjct: 259 IVDSNNPVTRRVQEIAKQCHQALGCRHYSLFDFRIDPQGQPWF-LEAGLYCSFSPKSVIP 317

Query: 276 EMAAYAGYSFRELLLWMVEDA 296
            MA   G S  ELL  ++++A
Sbjct: 318 MMAQAKGISLNELLEIVIKEA 338


>gi|307322893|ref|ZP_07602187.1| D-alanine--D-alanine ligase [Sinorhizobium meliloti AK83]
 gi|306891461|gb|EFN22353.1| D-alanine--D-alanine ligase [Sinorhizobium meliloti AK83]
          Length = 321

 Score = 92.4 bits (228), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 83/302 (27%), Positives = 141/302 (46%), Gaps = 27/302 (8%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + +L GG S+ER  SL +  A    L+     V  +D D    L+ A  + D   NV++G
Sbjct: 19  LVLLAGGSSTERGGSLETKNALLPYLQKLCRSVEVVDPDEVDHLLSAVRQCDFVLNVVYG 78

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV----CPSILVNRF 116
             GEDG +Q  L+ L +PY+   +LASA+ M+K     ++ + G PV      + L +  
Sbjct: 79  AGGEDGRIQGFLDTLRVPYSGPSVLASAIGMNKEVFVALLRAWGYPVPYGRLATTLEDPR 138

Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
           T   +   S   V+KP+  GSSLGI ++    +    + Q    +   +  +E++++G  
Sbjct: 139 TWPRELQQSKVLVLKPIDEGSSLGIKMLDGQAASAEAISQIEPCDRS-RWRLEEFIEGAS 197

Query: 177 LTCG--------VMGDASLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227
            T G        V+GDA +      +P    F+  +LK    +     PA       + V
Sbjct: 198 GTVGIFQVGPEFVIGDAVV----FDIPDGRRFFDDQLKIRPKSRILHGPAA------ERV 247

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287
           +  A   +Q + C+G+ R DF++        +LE+N  PG+ P S  P ++  + +SF +
Sbjct: 248 RNDALTLYQQLNCKGLVRLDFIYR--DSAPVYLEVNTIPGLHPDSTAP-LSFQSRFSFED 304

Query: 288 LL 289
            L
Sbjct: 305 FL 306


>gi|310821816|ref|YP_003954174.1| d-alanine-d-alanine ligase family protein [Stigmatella aurantiaca
           DW4/3-1]
 gi|309394888|gb|ADO72347.1| D-alanine-D-alanine ligase family protein [Stigmatella aurantiaca
           DW4/3-1]
          Length = 725

 Score = 92.4 bits (228), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 77/285 (27%), Positives = 144/285 (50%), Gaps = 18/285 (6%)

Query: 20  KACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGE--DGLVQAILELLEI 77
           +A   A+   G +V  ++ ++ +  VLA    D+ FN+  G  G   +  V A+LELL+I
Sbjct: 378 QAIREAIASWGHEVVDLEANQELPSVLASTPLDVVFNIAEGFKGRNRESQVPAMLELLDI 437

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGV--PVCPSILVNRFTMDSQHLISPPYVIKPLKG 135
           PYT S     ++++DK  +K++V   G+  P    +L  +  ++       P ++KP+  
Sbjct: 438 PYTGSDPATLSIALDKALAKKIVRQAGIHTPNFQLMLTGKERLNKDFTF--PLMVKPVAE 495

Query: 136 GSSLGII--VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS---LDVT 190
           GSS G++   +   ++   ++++  +  +    L+E+Y+ G E T G++G+     L   
Sbjct: 496 GSSKGVVSKSVCHSEAELREVVKEIASKYKQPALVEEYIGGREFTVGLLGERRPRVLPPM 555

Query: 191 EIAV----PKSDFYSYELKYSSLNS-THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
           EI       K+  YS++ K    +   +  PAK+   + + ++  A  +  A+GCR ++R
Sbjct: 556 EIVFLDKEEKNPVYSFQHKLDWTDRIRYDAPAKLEPALLERLRAAARGSFMALGCRDVAR 615

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPV-SIFPEMAAYAGYSFRELL 289
            DF  D   R ++++E N  PG+TP  S    +A  AG  +R L+
Sbjct: 616 IDFRMDDKGR-LYFIECNPLPGLTPGWSDLVLIAQGAGMDYRTLI 659



 Score = 79.7 bits (195), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 71/273 (26%), Positives = 119/273 (43%), Gaps = 26/273 (9%)

Query: 21  ACASALEDAGFKVSQIDVDRSVGLVLAHLK---PDLAFNVLHGNFGE--DGLVQAILELL 75
           A A A+E  G ++ + +V       +A L+   PDL FN   G  G   +    A+ + L
Sbjct: 28  ALAGAIERLGHRLERFEVSGPASRTVARLEAYSPDLIFNTAEGRRGRFREAFYPALFDEL 87

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKG 135
             PYT S   A A+++DK  +K +++  G+       V + +  +   +  P ++KP   
Sbjct: 88  GFPYTGSDAYALAVTLDKQLTKLILAKHGIRTPGWQYVEKLSELTAENLRFPVIVKPNFE 147

Query: 136 GSSLGII---VIKKDQSIPLDLLQS-SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           GSS GI    + +    +   + Q+ + +  G  +L+E+Y+ G +LT   +     D   
Sbjct: 148 GSSKGITQDSIAETLDEVRAKVTQALAKYPAG--VLVEEYIGGKDLTVPFLAAVDNDYDG 205

Query: 192 IAVP-------------KSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQA 237
           +  P             K   Y YELK    ++  V  PA I     ++V+++A    Q 
Sbjct: 206 VLSPVEYVIDPAATVGRKYPIYDYELKTKHHSAVRVRAPANISAKTAEDVRKMAQTIFQV 265

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270
           + CR + R DF         F LEIN  P + P
Sbjct: 266 LDCRDLGRIDFRLSDAGVPYF-LEINALPSLEP 297


>gi|108757010|ref|YP_632275.1| D-alanine-D-alanine ligase family protein [Myxococcus xanthus DK
           1622]
 gi|108460890|gb|ABF86075.1| D-alanine-D-alanine ligase family protein [Myxococcus xanthus DK
           1622]
          Length = 729

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 71/265 (26%), Positives = 135/265 (50%), Gaps = 16/265 (6%)

Query: 20  KACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGE--DGLVQAILELLEI 77
           +A   A+   G +V  ++    +  VL+    D+ FN+  G  G   +  V A+LELL+I
Sbjct: 380 QAIREAIASWGHEVIDLEATAELPSVLSSTPLDVVFNIAEGFKGRNRESQVPALLELLDI 439

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTMDSQHLISPPYVIKPLKG 135
           PYT S     ++++DK  +K++V   G+ + P+  ++       ++   S P ++KP+  
Sbjct: 440 PYTGSDPATLSIALDKGLAKKIVRQAGI-LTPNFQLMATGKERLNKEFTSFPLIVKPVAE 498

Query: 136 GSSLGIIV--IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS---LDVT 190
           GSS G++   +   ++   ++++  +  +    LIE+Y+ G E T G++G+     L   
Sbjct: 499 GSSKGVVTKSVCHSEAELREVVREIAGKYQQPALIEEYIRGREFTVGLLGERRPRVLPPM 558

Query: 191 EIAV----PKSDFYSYELKYSSLNS-THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
           EI       K+  YS++ K    +   +  PAK+   + + ++  A  +  A+GCR ++R
Sbjct: 559 EIVFLDREEKNPVYSFQHKLDWTDRIRYDAPAKLEPALLERLRTAARNSFMALGCRDVAR 618

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTP 270
            DF  D   R ++++E N  PG+TP
Sbjct: 619 IDFRMDDKGR-IYFIECNPLPGLTP 642



 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 75/275 (27%), Positives = 119/275 (43%), Gaps = 30/275 (10%)

Query: 21  ACASALEDAGFKVSQIDVDRSVGLVLAHLK---PDLAFNVLHGNFGE--DGLVQAILELL 75
           A A+A+E  G ++ + +V       +A L+   PDL FN   G  G   +    A+ + L
Sbjct: 28  ALAAAIERIGHRLERFEVSGPASRTVARLEAYSPDLIFNTAEGRRGRFREAFYPALFDEL 87

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKG 135
             PYT S   A A+++DK  +K V+S  G+       V + +  S   +  P ++KP   
Sbjct: 88  GFPYTGSDAYALAVTLDKQLTKLVLSKQGIRTPGWQYVEKLSELSAENLRFPVIVKPNFE 147

Query: 136 GSSLGIIVIKKDQSIPLDL------LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           GSS GI       SI   L      + ++   +   +L+E+Y+ G +L    +     D 
Sbjct: 148 GSSKGI----SQDSIAETLDEVRAKVAAALEKYPSGVLVEEYISGRDLAVPFLESVDNDY 203

Query: 190 TEIAVP-------------KSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAH 235
             +  P             K   Y Y LK S   +  V  PA+IP    ++V+R+A   +
Sbjct: 204 DGVLSPVEYVIDPAVTQGRKYAIYDYALKTSREGTVSVRAPAQIPPRTAEDVRRMAQKVY 263

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270
           +A+ CR + R D          F LEIN  P + P
Sbjct: 264 RALDCRDLGRIDVRLSDAGVPYF-LEINALPSLEP 297


>gi|290646|gb|AAA24785.1| vanB2 ORF [Enterococcus faecalis]
          Length = 210

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 63/213 (29%), Positives = 105/213 (49%), Gaps = 10/213 (4%)

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
           EDG +Q + EL  IPY    I +SA  MDK  +  +  + G+ V    ++++        
Sbjct: 1   EDGCIQGLFELSGIPYVGCDIQSSAACMDKSLAYILTKNAGIAVPEFQMIDKGDKPEAGA 60

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           ++ P  +KP + GSS G  V K + +  L+    ++  +  ++LIEQ + G E+ C VMG
Sbjct: 61  LTYPVFVKPARSGSSFG--VTKVNGTEELNAAIEAAGQYDGKILIEQAISGCEVGCAVMG 118

Query: 184 DAS----LDVTEIAVPKSDFYSY---ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +       +V +I +    F  +   E +  S N+   +PA IP++    VQ  A   ++
Sbjct: 119 NEDDLIVGEVDQIRLSHGIFRIHQENEPEKGSENAMITVPADIPVEERNRVQETAKKVYR 178

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
            +GCRG++R D LF      +   E+N  PG T
Sbjct: 179 VLGCRGLARVD-LFLQEDGGIVLNEVNTLPGFT 210


>gi|162449160|ref|YP_001611527.1| D-alanine-D-alanine ligase / aminopeptidase [Sorangium cellulosum
           'So ce 56']
 gi|161159742|emb|CAN91047.1| D-alanine-D-alanine ligase / aminopeptidase [Sorangium cellulosum
           'So ce 56']
          Length = 1185

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 88/317 (27%), Positives = 147/317 (46%), Gaps = 39/317 (12%)

Query: 21  ACASALEDAGFKVSQIDVDRSVGLVLAHL---KPDLAFNVLHGNFGE--DGLVQAILELL 75
           A A ALE AG +V +I+V      VLA L   +PDL FN   G+ G+  +    ++ + L
Sbjct: 28  AIAGALERAGHEVERIEVSGPASRVLARLEALQPDLIFNTAEGHKGKTREAFYPSLFDEL 87

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL--ISPPYVIKPL 133
            IPYT S      +++DK  +K+V++S GV    + LVNR T+DS  L  +S P ++KP 
Sbjct: 88  GIPYTGSDAYTLNVALDKSLTKRVLASYGVATPRARLVNRTTLDSGALDDVSFPVIVKPN 147

Query: 134 KGGSSLGII---VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC----------- 179
             GSS GI     + +D     ++++         LL+E Y+ GI++ C           
Sbjct: 148 FEGSSKGIFREWSVCEDAHHLAEVVERQLARFEAGLLVEHYIAGIDVACAFVDGLKEANG 207

Query: 180 ----------GVMGDASLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
                     GV+      V +  VP S + Y + LK++        PA++P    + ++
Sbjct: 208 ARSSGTGIPEGVLTPIEF-VIDPQVPGSYNVYDFNLKHAKPEQVTRRPAQLPAATIERIR 266

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRK-----VFWLEINVQPGMTPVSIFPEMAAYAGY 283
            +     +A+  +  +R +F   P + +     V +LE++  P + P +     AA  G 
Sbjct: 267 AITARVVRALDLKDHARCEFRVTPSASRSQGHDVHFLEVDGLPTLQPGASVFVAAAQRGV 326

Query: 284 SFRELLLWMVEDASCLR 300
            F  ++  +V  A C R
Sbjct: 327 DFDGVIRAIVRSA-CKR 342



 Score = 88.2 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 80/296 (27%), Positives = 136/296 (45%), Gaps = 22/296 (7%)

Query: 20  KACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG--NFGEDGLVQAILELLEI 77
           +A  SA+E  G  V  ++    +   LA    D+ FN+  G    G +  V A+ ELL I
Sbjct: 400 QAITSAIESYGHTVVPLEATPDLPRALAASGVDVVFNIAEGLRGRGREAQVPALCELLGI 459

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP---PYVIKPLK 134
           PY+ S     +L++DK  +KQ++ + G+      +V       +  + P   P ++KP  
Sbjct: 460 PYSGSDATTLSLALDKGLTKQILRAAGIETAEWQVVT----TGREKLKPFRYPVIVKPNA 515

Query: 135 GGSSLGII--VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD------AS 186
            G+S GI    + KD++      +     +    LIE+Y+ G E T G++G+        
Sbjct: 516 EGTSKGITSASVVKDEAAARAAAKQLVDRYHQPALIEEYITGREFTVGLLGERRPKVLPP 575

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
           ++V  +  P    Y Y+ K S         PA++     + V+++      A+ CR ++R
Sbjct: 576 MEVVFVDPPAYPVYGYDEKQSDTPRVRFECPAQLTPSELRRVEKVVRDTFAALACRDVAR 635

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTP-VSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
            D       R V+ +EIN  PG+TP  S    +A  AG  +R L+  ++  A CL+
Sbjct: 636 VDLRMAKDGR-VYVIEINPLPGLTPDFSDLCVIAKVAGMDYRMLIGEIL--AGCLK 688


>gi|16519939|ref|NP_444059.1| conserved putative 40.0 kDa D-alanine--D-alanine ligase
           [Sinorhizobium fredii NGR234]
 gi|2494029|sp|P55650|Y4SG_RHISN RecName: Full=Uncharacterized protein y4sG
 gi|2182621|gb|AAB91846.1| conserved putative 40.0 kDa D-alanine--D-alanine ligase
           [Sinorhizobium fredii NGR234]
          Length = 336

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 76/285 (26%), Positives = 135/285 (47%), Gaps = 25/285 (8%)

Query: 24  SALEDAGFKVSQIDVDRSVGLVLAHLKP--------DLAFNVLHGNFGEDGL--VQAILE 73
           +AL++ G +    + D+ +   L    P         + FN+  G  GE     V A+LE
Sbjct: 40  AALQECGHETLLCEGDKGLLTTLERFMPPDPLARTSGMVFNLAEGIQGEYRFTHVPAMLE 99

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPL 133
           +  +PYT S  L   L+ DK+ SK ++   GVP  P+  + R   +S   +  P V+KP 
Sbjct: 100 MAGVPYTGSSPLGHGLTDDKVISKTLMRDSGVPT-PNFSIMRRGTESTDDLRFPVVVKPR 158

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSW---NHGDQLLIEQYVDGIELTCGVMGDASLDVT 190
              +S G+ ++ +    P  L Q+       +    L+E+Y+DG E+   ++G+  ++V 
Sbjct: 159 HEDNSFGLQLVHE----PAQLQQAVKMIVTKYAQDALVEEYIDGREIHVALLGNQEVEVL 214

Query: 191 -----EIAVPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244
                E+   ++   ++E KY +++      PAKI   +   ++ ++    +A  CR  +
Sbjct: 215 PMVEFELGEHEAPLLTWEAKYLAAVQPPKTCPAKIESKLATLLRDISVATFRACQCRDYA 274

Query: 245 RSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           R D   D  S + F LEIN  PG++  S +   A  AG+S+  L+
Sbjct: 275 RVDLRLD-RSGQPFVLEINSMPGLSTHSAYVLAAMTAGHSYSSLI 318


>gi|113970466|ref|YP_734259.1| D-alanyl-alanine synthetase A [Shewanella sp. MR-4]
 gi|123029617|sp|Q0HIB5|DDL_SHESM RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|113885150|gb|ABI39202.1| D-alanine--D-alanine ligase [Shewanella sp. MR-4]
          Length = 336

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 70/250 (28%), Positives = 120/250 (48%), Gaps = 15/250 (6%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D     +HG  GE G +Q+   L+++PY      AS+   +K+ +K   S+ G+P  P I
Sbjct: 79  DYVIPCIHGYPGETGDIQSYFNLIQLPYFGCESEASSNCFNKITAKMWFSALGIPNTPYI 138

Query: 112 LVNRFT----MDSQHLISP--PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
            +N++       +Q  +       +K    GSS+G    K D S  +  +   ++ +   
Sbjct: 139 FLNQYDDEAIAQTQAALENWGSIFVKAASQGSSVG--CYKVDDSSKVAGVLKDAFGYAPY 196

Query: 166 LLIEQYVDGIELTCGV---MGDASLDVT-EIAVPKSDFYSYELKY--SSLNSTHVLPAKI 219
           +++E+ +   EL   V    G+    +  EI    + FY+++ KY  SS   T V+   +
Sbjct: 197 VIVEKTIKARELEVAVYEYQGEVVATLPGEIICDSNTFYTFDEKYAKSSKARTDVVAQNV 256

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279
           P DI ++++  A  A + +  R +SR DF F     ++   EIN  PG TP+S+FP+M  
Sbjct: 257 PTDISEQIRAYAIKAFKGMKLRHLSRIDF-FLTQDNEILLNEINTFPGSTPISMFPKMLQ 315

Query: 280 YAGYSFRELL 289
             G+ F E L
Sbjct: 316 NHGHDFTEYL 325


>gi|220916612|ref|YP_002491916.1| D-alanine--D-alanine ligase [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219954466|gb|ACL64850.1| D-alanine--D-alanine ligase [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 728

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 80/286 (27%), Positives = 142/286 (49%), Gaps = 20/286 (6%)

Query: 20  KACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGE--DGLVQAILELLEI 77
           +A   A+   G +V  ++  + + L L     D+ FN+  G  G   +  V ++LELL+I
Sbjct: 377 QAIREAIASWGHEVVDLEATQDLPLQLVSTPVDVVFNIAEGFKGRSRESQVPSLLELLDI 436

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGS 137
           PYT S   A ++S+DK  +K++V + G+     +++N         ++ P ++KP+  G+
Sbjct: 437 PYTGSDPAALSVSLDKALAKRMVRTHGILTPDYLVLNTGNERLPRELTFPLIVKPVAEGT 496

Query: 138 SLGIIV--IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS---LDVTEI 192
           S G+    + +D+    ++ +     +    L E YV G E T G++G+     L   EI
Sbjct: 497 SKGVTRKSVVRDEPELREVARELIAKYRQPALAEGYVSGREFTVGLLGERRPRVLPPMEI 556

Query: 193 ----AVPKSDFYSYELKYS-SLNSTHVLPAKIPLDIYKEVQRLAFLAHQ---AIGCRGIS 244
               A   +  YS+E+K   +    + +PAK+     +E++RL   A +   A+GCR ++
Sbjct: 557 VFLDAKDPTPIYSFEMKQDWNERIRYEVPAKL---TPRELERLEKAARECFTALGCRDVA 613

Query: 245 RSDFLFDPLSRKVFWLEINVQPGMTP-VSIFPEMAAYAGYSFRELL 289
           R DF  D   R + ++E N  PG+ P  S    +A  AG  +R L+
Sbjct: 614 RLDFRMDAEGR-IHFIECNPLPGLAPGWSDLVLIAQAAGMDYRALI 658



 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 75/285 (26%), Positives = 124/285 (43%), Gaps = 25/285 (8%)

Query: 10  SEREVSLSSGK---ACASALEDAGFKVSQIDVDRSVGLVLAHLK---PDLAFNVLHGNFG 63
           SE E    + +   A A A+E  G +V +I+V       +  L+   PDL FN   G  G
Sbjct: 14  SEEEAEFDTRETVDALAGAIERLGHRVERIEVSGPASRTVTRLEAFGPDLIFNTAEGRRG 73

Query: 64  E--DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ 121
              +    A+ + L +PYT S   A ++++DK  +K V++  GV       V        
Sbjct: 74  RFREAFFPALFDELGMPYTGSDAYALSVTLDKQLTKLVLAQKGVRTPRWQYVEEPWQLQV 133

Query: 122 HLISPPYVIKPLKGGSSLGII--VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
           + +  P ++KP   GSS GI    +  D     +++Q     +   LL+E++V G +LT 
Sbjct: 134 NALRYPVIVKPNFEGSSKGITQDSVVDDPMRLHEVVQDGLARYPAGLLVEEFVVGRDLTV 193

Query: 180 GVMGDAS-------------LDVTEIAVPKSDFYSYELKYSSLNSTHV-LPAKIPLDIYK 225
             +  A+             +D    A  K   Y YELK     +  V  PAK+     +
Sbjct: 194 PFLEAAAPERHGVLQPVEYVIDPAVTAGRKYAIYDYELKTKLDQAVSVRAPAKVKRAQAE 253

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270
            +Q+L    ++ +G R + R D        ++++LEIN  P + P
Sbjct: 254 RIQQLCETVYRELGIRDLGRIDLRLGD-DGELYFLEINALPSLEP 297


>gi|86158871|ref|YP_465656.1| D-alanine--D-alanine ligase [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85775382|gb|ABC82219.1| D-alanine--D-alanine ligase [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 727

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 79/283 (27%), Positives = 139/283 (49%), Gaps = 14/283 (4%)

Query: 20  KACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGE--DGLVQAILELLEI 77
           +A   A+   G +V  ++  + + L LA    D+ FN+  G  G   +  V ++LELL+I
Sbjct: 377 QAIREAIASWGHEVVDLEATQDLPLQLASTPVDVVFNIAEGFKGRSRESQVPSLLELLDI 436

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGS 137
           PYT S   A ++S+DK  +K++V + G+     +++N         ++ P ++KP+  G+
Sbjct: 437 PYTGSDPSALSVSLDKALAKRMVRTHGILTPDYLVLNTGNERLPRELTFPLIVKPVAEGT 496

Query: 138 SLGIIV--IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS---LDVTEI 192
           S G+    + +D+    ++ +     +    L E YV G E T G++G+     L   EI
Sbjct: 497 SKGVTRKSVVRDELELREVARELIAKYRQPALAEGYVSGREFTVGLLGERRPRVLPPMEI 556

Query: 193 ----AVPKSDFYSYELKYS-SLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
               A   +  YS+E+K   S    + +PAK+       +++ A     A+GCR ++R D
Sbjct: 557 VFLDAKDPTPIYSFEMKQDWSERIRYEVPAKLSPRELDRLEKAARECFTALGCRDVARLD 616

Query: 248 FLFDPLSRKVFWLEINVQPGMTP-VSIFPEMAAYAGYSFRELL 289
           F  D   R + ++E N  PG+ P  S    +A  AG  +R L+
Sbjct: 617 FRMDAEGR-IHFIECNPLPGLAPGWSDLVLIAQAAGMDYRGLI 658



 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 76/285 (26%), Positives = 124/285 (43%), Gaps = 25/285 (8%)

Query: 10  SEREVSLSSGK---ACASALEDAGFKVSQIDVDRSVGLVLAHLK---PDLAFNVLHGNFG 63
           SE E    + +   A A A+E  G +V +I+V       +  L+   PDL FN   G  G
Sbjct: 14  SEEEAEFDTRETVDALAGAIERLGHRVERIEVSGPASRTVTRLEAFGPDLIFNTAEGRRG 73

Query: 64  E--DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ 121
              +    A+ + L +PYT S   A A+++DK  +K V++  GV       V        
Sbjct: 74  RFREAFFPALFDELGMPYTGSDAYALAVTLDKQLTKLVLAQKGVRTPRWQYVEEPWQLQV 133

Query: 122 HLISPPYVIKPLKGGSSLGII--VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
           + +  P ++KP   GSS GI    +  D     +++Q     +   LL+E++V G +LT 
Sbjct: 134 NALRYPVIVKPNFEGSSKGITQDSVVDDPVRLHEVVQDGLARYPAGLLVEEFVVGRDLTV 193

Query: 180 GVMGDASLDVTEIAVP-------------KSDFYSYELKYSSLNSTHV-LPAKIPLDIYK 225
             +  A+ D   +  P             K   Y YELK     +  V  PAK+     +
Sbjct: 194 PFLEAAAPDRHGVLQPVEYVIDPAVTAGRKYAIYDYELKTKLDKAVSVRAPAKVKRAQAE 253

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270
            +Q+L    ++ +G R + R D        ++++LEIN  P + P
Sbjct: 254 RIQQLCETVYRELGIRDLGRIDLRLGD-DGELYFLEINALPSLEP 297


>gi|197121819|ref|YP_002133770.1| D-alanine--D-alanine ligase [Anaeromyxobacter sp. K]
 gi|196171668|gb|ACG72641.1| D-alanine--D-alanine ligase [Anaeromyxobacter sp. K]
          Length = 728

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 77/283 (27%), Positives = 139/283 (49%), Gaps = 14/283 (4%)

Query: 20  KACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGE--DGLVQAILELLEI 77
           +A   A+   G +V  ++  + + L L     D+ FN+  G  G   +  V ++LELL+I
Sbjct: 377 QAIREAIASWGHEVVDLEATQDLPLQLVSTPVDVVFNIAEGFKGRSRESQVPSLLELLDI 436

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGS 137
           PYT S   A ++S+DK  +K++V + G+     +++N         ++ P ++KP+  G+
Sbjct: 437 PYTGSDPAALSVSLDKALAKRMVRTHGILTPDYLVLNTGNERLPRELTFPLIVKPVAEGT 496

Query: 138 SLGIIV--IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS---LDVTEI 192
           S G+    + +D+    ++ +     +    L E YV G E T G++G+     L   EI
Sbjct: 497 SKGVTRKSVVRDEPELREVARELIAKYRQPALAEGYVSGREFTVGLLGERRPRVLPPMEI 556

Query: 193 ----AVPKSDFYSYELKYS-SLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
               A   +  YS+E+K   +    + +PAK+     + +++ A     A+GCR ++R D
Sbjct: 557 VFLDAKDPTPIYSFEMKQDWNERIRYEVPAKLSPRELERLEKAARECFTALGCRDVARLD 616

Query: 248 FLFDPLSRKVFWLEINVQPGMTP-VSIFPEMAAYAGYSFRELL 289
           F  D   R + ++E N  PG+ P  S    +A  AG  +R L+
Sbjct: 617 FRMDAEGR-IHFIECNPLPGLAPGWSDLVLIAQAAGMDYRALI 658



 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 78/297 (26%), Positives = 128/297 (43%), Gaps = 25/297 (8%)

Query: 10  SEREVSLSSGK---ACASALEDAGFKVSQIDVDRSVGLVLAHLK---PDLAFNVLHGNFG 63
           SE E    + +   A A A+E  G +V +I+V       +  L+   PDL FN   G  G
Sbjct: 14  SEEEAEFDTRETVDALAGAIERLGHRVERIEVSGPASRTVTRLEAFGPDLIFNTAEGRRG 73

Query: 64  E--DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ 121
              +    A+ + L +PYT S   A ++++DK  +K V++  GV       V        
Sbjct: 74  RFREAFFPALFDELGMPYTGSDAYALSVTLDKQLTKLVLAQKGVRTPRWQYVEEPWQLQV 133

Query: 122 HLISPPYVIKPLKGGSSLGII--VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
           + +  P ++KP   GSS GI    +  D     +++Q     +   LL+E++V G +LT 
Sbjct: 134 NALRYPVIVKPNFEGSSKGITQDSVVDDPMRLHEVVQDGLARYPAGLLVEEFVVGRDLTV 193

Query: 180 GVMGDAS-------------LDVTEIAVPKSDFYSYELKYSSLNSTHV-LPAKIPLDIYK 225
             +  A+             +D    A  K   Y YELK     +  V  PAK+     +
Sbjct: 194 PFLEAAAPERHGVLQPVEYVIDPAVTAGRKYAIYDYELKTKLDKAVSVRAPAKVKRAQAE 253

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAG 282
            +Q+L    ++ +G R + R D        ++++LEIN  P + P +     AA  G
Sbjct: 254 RIQQLCETVYRELGIRDLGRIDLRLGD-DGELYFLEINALPSLEPGAGIYAAAALEG 309


>gi|29840620|ref|NP_829726.1| UDP-N-acetylmuramate--alanine ligase/D-alanine--D-alanine ligase
           [Chlamydophila caviae GPIC]
 gi|41017332|sp|Q821S4|MUDD_CHLCV RecName: Full=Bifunctional enzyme MurC/Ddl; Includes: RecName:
           Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase;
           Includes: RecName: Full=D-alanine--D-alanine ligase;
           AltName: Full=D-Ala-D-Ala ligase; AltName:
           Full=D-alanylalanine synthetase
 gi|29834970|gb|AAP05604.1| UDP-N-acetylmuramate--alanine ligase/D-alanine--D-alanine ligase
           [Chlamydophila caviae GPIC]
          Length = 811

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 93/344 (27%), Positives = 148/344 (43%), Gaps = 64/344 (18%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------------------- 40
           + V+ GG S E +VSL S +     L    + V    ++R                    
Sbjct: 454 VGVVCGGQSCEHDVSLLSARNVVQYLSPQHYDVQYFVINRQGLWSQVANLDAGSDYNSKN 513

Query: 41  ------SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKM 94
                  +   LA+L  D    +LHG FGEDG +Q  LE+   PY    +L SA+SMDK+
Sbjct: 514 YHVLSSKIAEALANL--DFVLPILHGPFGEDGTLQGFLEIANKPYGGPSLLFSAISMDKI 571

Query: 95  RSKQVVSSCGVPVCPSI------------LVNRFTMDSQHLISPPYVIKPLKGGSSLGII 142
            +K++ +S GVPV P              L  R  +++    + P  +K    GSS+G+ 
Sbjct: 572 MTKRLAASVGVPVVPYQPLTLPTWKRTPELCMRRILET---FTFPMFVKTAHLGSSIGVF 628

Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG---IELTCGVMGDASLDVTEIAVPK--- 196
            +  +  +   +  S ++ +   + IE+   G   IE++C  +GDA      I+ P    
Sbjct: 629 EVHNETELKAKI--SEAFLYDTDVFIEESRLGSREIEVSC--LGDA-CSCYYISEPHERR 683

Query: 197 --SDFYSYELKYSSLNSTHVLPAKIPLDIYKE----VQRLAFLAHQAIGCRGISRSDFLF 250
               F  YE KY   N       +  L++ +E    V+ L    ++ I  +G  R DF  
Sbjct: 684 GSKGFIGYEEKY-GFNGKSSATIQYDLNLSEESKTRVKELTERVYRVIQGKGSCRIDFFL 742

Query: 251 DPLSRKVFWL-EINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           D      FWL E+N  PGMT  S F    A  G++F +++  ++
Sbjct: 743 D--REGNFWLSEMNPIPGMTKSSPFLHDFARLGWTFEQIVHQLI 784


>gi|114047700|ref|YP_738250.1| D-alanyl-alanine synthetase A [Shewanella sp. MR-7]
 gi|123326497|sp|Q0HUL2|DDL_SHESR RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|113889142|gb|ABI43193.1| D-alanine--D-alanine ligase [Shewanella sp. MR-7]
          Length = 336

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 70/250 (28%), Positives = 119/250 (47%), Gaps = 15/250 (6%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D     +HG  GE G +Q+   L+++PY      AS+   +K+ +K   S+ G+P  P I
Sbjct: 79  DYVIPCIHGYPGETGDIQSYFNLIQLPYFGCESEASSNCFNKITAKMWFSALGIPNTPYI 138

Query: 112 LVNRFT----MDSQHLISP--PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
            +N++       +Q  +       +K    GSS+G    K D S  +  +   ++ +   
Sbjct: 139 FLNQYDDEAIAQTQAALENWGSIFVKAASQGSSVG--CYKVDDSSKVAGVLKDAFGYAPY 196

Query: 166 LLIEQYVDGIELTCGV---MGDASLDVT-EIAVPKSDFYSYELKY--SSLNSTHVLPAKI 219
           +++E+ +   EL   V    G+    +  EI    + FY+++ KY  SS   T V+   +
Sbjct: 197 VIVEKTIKARELEVAVYEYQGEVVATLPGEIICDSNTFYTFDEKYAKSSKARTDVVAQNV 256

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279
           P DI  +++  A  A + +  R +SR DF F     ++   EIN  PG TP+S+FP+M  
Sbjct: 257 PADISDQIRAYAIKAFKGMKLRHLSRIDF-FLTQDNEILLNEINTFPGSTPISMFPKMLQ 315

Query: 280 YAGYSFRELL 289
             G+ F E L
Sbjct: 316 NHGHDFTEYL 325


>gi|297621521|ref|YP_003709658.1| putative D-alanine--D-alanine ligase [Waddlia chondrophila WSU
           86-1044]
 gi|297376822|gb|ADI38652.1| putative D-alanine--D-alanine ligase [Waddlia chondrophila WSU
           86-1044]
          Length = 380

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 92/333 (27%), Positives = 142/333 (42%), Gaps = 68/333 (20%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKV--------------------------- 33
           +AVL GG S E E+S+ +G     AL    +K+                           
Sbjct: 4   LAVLFGGRSIEHEISVITGLQAILALNPKKYKILPVYFALNGKWYTGDPLLERSFYRKLP 63

Query: 34  ------SQIDV--DRSVG----LVLAHLKP-DLAFNVLHGNFGEDGLVQAILELLEIPYT 80
                 ++I +  D S+G    L L    P D      HG +GEDG VQ +LEL  +PYT
Sbjct: 64  AAYSDLTEITLLPDPSIGGFKDLALNRTYPVDRCLLCFHGQYGEDGCVQGLLELAGLPYT 123

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ---------HLISPPYVIK 131
            S +L+SAL+M K  +K ++ +  +P  P ++V++    S            +  P  IK
Sbjct: 124 GSRVLSSALTMSKSHTKLLLQALNIPCLPHVVVDKQEAVSDLAAVRKKILDTLRYPLFIK 183

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVM-GDASL-D 188
           P   GSS+GI       S  LD   +  + +    +IE Y+D  +E+   V+ GD     
Sbjct: 184 PNHLGSSIGIAKATDKNS--LDRALAKVFLYDSAAIIEPYLDNLLEINVSVLEGDPPRSS 241

Query: 189 VTEIAVPKSDFYSYELKY------SSLNSTH--------VLPAKIPLDIYKEVQRLAFLA 234
             EI +   +  SYE KY      S+  S+         + P  + L I + V   A  A
Sbjct: 242 AVEIPIASQEALSYEDKYLKGGAKSTGGSSQGMAGLTRMIDPQDLDLKIKQGVINHALKA 301

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPG 267
            + + C G+ R DF+ D  +  +++ E N  PG
Sbjct: 302 FKELSCSGVCRFDFMLDTSTETLYFNEANPIPG 334


>gi|58698113|ref|ZP_00373036.1| D-alanine-D-alanine ligase [Wolbachia endosymbiont of Drosophila
           ananassae]
 gi|58535359|gb|EAL59435.1| D-alanine-D-alanine ligase [Wolbachia endosymbiont of Drosophila
           ananassae]
          Length = 190

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 45/101 (44%), Positives = 64/101 (63%), Gaps = 1/101 (0%)

Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256
           + FY YE KY+   + H+ PAKIP +IYK     A   HQ +GC+ ISRSDF ++P +  
Sbjct: 74  NKFYDYEAKYTDGFAEHIFPAKIPDNIYKMTLEHALKIHQFLGCKTISRSDFRYNPKNNT 133

Query: 257 VFWLEINVQPGMTPVSIFPEMAAYA-GYSFRELLLWMVEDA 296
           +  LEIN  PG T +S+ PE+A  A G +F EL+  ++ED+
Sbjct: 134 LKMLEINTHPGFTELSLVPEIAKLAKGINFNELVKIIIEDS 174


>gi|119775038|ref|YP_927778.1| D-alanyl-alanine synthetase A [Shewanella amazonensis SB2B]
 gi|189083048|sp|A1S6V2|DDL_SHEAM RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|119767538|gb|ABM00109.1| D-alanine--D-alanine ligase [Shewanella amazonensis SB2B]
          Length = 336

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 80/323 (24%), Positives = 138/323 (42%), Gaps = 37/323 (11%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALE--------------DAGFKVSQIDV-----DRS 41
           + +L GG  SE ++SL S K   S L               +  F+  + ++      R 
Sbjct: 6   LVLLCGGGGSEHDISLLSAKYFESCLATLPRFNTLWLELTAEGQFRTREGEIVELTNRRE 65

Query: 42  VGLVLAHLKP---DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQ 98
           +        P   D     +HG  GE G +Q+   L+ +PY   G  AS+   +K+ +K 
Sbjct: 66  IRFADEAKAPWSVDYVIPCIHGYPGETGDIQSWFNLIRLPYFGCGSEASSNCFNKITAKM 125

Query: 99  VVSSCGVPVCPSILVNRFTMDSQHLISPPY------VIKPLKGGSSLGIIVIKKDQSIPL 152
             S+ G+P  P + ++  + D+   +   +       IK    GSS+G     + + IP 
Sbjct: 126 WFSALGIPNTPYLYLDEPSNDAIARVEAAFDEWGSVFIKAASQGSSVGCFPAHRREDIP- 184

Query: 153 DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT----EIAVPKSDFYSYELKYSS 208
             L   ++ +   +++E+ +   EL   V       V     EI    + FYS+E KY +
Sbjct: 185 -GLVRKAFEYAPFVVVEKTIKARELEVAVYDYQGEIVATRPGEIVCAANTFYSFEEKYDT 243

Query: 209 LNS--THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
            +   THV    +  +    ++  A  A + +  R +SR DF       ++   EIN  P
Sbjct: 244 KSQAVTHVEAPDVDEETVAAIRDYALRAFKGMKLRHLSRIDFFLTE-DNQILLNEINTFP 302

Query: 267 GMTPVSIFPEMAAYAGYSFRELL 289
           G+T +S+FP+M A+ G+ F   L
Sbjct: 303 GLTQISMFPKMLAHHGHDFATFL 325


>gi|217973465|ref|YP_002358216.1| D-alanyl-alanine synthetase A [Shewanella baltica OS223]
 gi|254767737|sp|B8E569|DDL_SHEB2 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|217498600|gb|ACK46793.1| D-alanine/D-alanine ligase [Shewanella baltica OS223]
          Length = 337

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 83/321 (25%), Positives = 146/321 (45%), Gaps = 37/321 (11%)

Query: 3   VLMGGISSEREVSLSSGKACASAL-EDAGFKVSQIDVD------------------RSVG 43
           +L GG S+E ++SL S     ++L +   F V ++++D                  R + 
Sbjct: 8   LLCGGGSAEHDISLMSANYFETSLAKSEQFSVLRVELDKFGQYRTAAGDDCELTNSREIR 67

Query: 44  LVLAHLKP---DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
                  P   D     +HG  GE G +Q+   L+++PY      AS+   +K+ +K   
Sbjct: 68  FRDESKTPWPVDYVIPCIHGYPGETGDIQSYFNLIQLPYFGCESEASSNCFNKITAKMWF 127

Query: 101 SSCGVPVCPSILVNRF----TMDSQHLISP--PYVIKPLKGGSSLGIIVIKKDQSIPLDL 154
           S+ G+P  P I +N+F       +Q  ++      +K    GSS+G    K D S  +  
Sbjct: 128 SALGIPNTPYIFLNQFDDAAIEQTQTALAQWGSIFVKAASQGSSVG--CYKVDDSAKVAG 185

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVM---GDASLDV-TEIAVPKSDFYSYELKY--SS 208
           +   ++ +   +++E+ +   EL   V    G+    V  EI    + FY+++ KY  +S
Sbjct: 186 VLKDAFGYAPYVIVEKTIKARELEVAVYEYNGEVVATVPGEIICDTNTFYTFDEKYAKNS 245

Query: 209 LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268
              T V+   +  +I ++++  A  A + +  R +SR DF F     ++   EIN  PG 
Sbjct: 246 KARTDVVAQHVSAEISEQIRAYAIKAFKGMKLRHLSRIDF-FLTADNEILLNEINTFPGS 304

Query: 269 TPVSIFPEMAAYAGYSFRELL 289
           TP+S+FP+M    G+ F E L
Sbjct: 305 TPISMFPKMLQNHGHDFTEYL 325


>gi|153000567|ref|YP_001366248.1| D-alanyl-alanine synthetase A [Shewanella baltica OS185]
 gi|189083049|sp|A6WMZ6|DDL_SHEB8 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|151365185|gb|ABS08185.1| D-alanine--D-alanine ligase [Shewanella baltica OS185]
          Length = 337

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 83/321 (25%), Positives = 146/321 (45%), Gaps = 37/321 (11%)

Query: 3   VLMGGISSEREVSLSSGKACASAL-EDAGFKVSQIDVD------------------RSVG 43
           +L GG S+E ++SL S     ++L +   F V ++++D                  R + 
Sbjct: 8   LLCGGGSAEHDISLMSANYFETSLAKSEQFSVLRVELDKFGQYRTAAGDDCELTNSREIR 67

Query: 44  LVLAHLKP---DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
                  P   D     +HG  GE G +Q+   L+++PY      AS+   +K+ +K   
Sbjct: 68  FRDESKTPWPVDYVIPCIHGYPGETGDIQSYFNLIQLPYFGCESEASSNCFNKITAKMWF 127

Query: 101 SSCGVPVCPSILVNRF----TMDSQHLISP--PYVIKPLKGGSSLGIIVIKKDQSIPLDL 154
           S+ G+P  P I +N+F       +Q  ++      +K    GSS+G    K D S  +  
Sbjct: 128 SALGIPNTPYIFLNQFDDAAIEQTQAALAQWGSIFVKAASQGSSVG--CYKVDDSAKVAG 185

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVM---GDASLDV-TEIAVPKSDFYSYELKY--SS 208
           +   ++ +   +++E+ +   EL   V    G+    V  EI    + FY+++ KY  +S
Sbjct: 186 VLKDAFGYAPYVIVEKTIKARELEVAVYEYNGEVVATVPGEIICDTNTFYTFDEKYAKNS 245

Query: 209 LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268
              T V+   +  +I ++++  A  A + +  R +SR DF F     ++   EIN  PG 
Sbjct: 246 KARTDVVAQHVSAEISEQIRAYAIKAFKGMKLRHLSRIDF-FLTADNEILLNEINTFPGS 304

Query: 269 TPVSIFPEMAAYAGYSFRELL 289
           TP+S+FP+M    G+ F E L
Sbjct: 305 TPISMFPKMLQNHGHDFTEYL 325


>gi|144897235|emb|CAM74099.1| D-alanine--D-alanine ligase [Magnetospirillum gryphiswaldense
           MSR-1]
          Length = 90

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 43/88 (48%), Positives = 59/88 (67%), Gaps = 4/88 (4%)

Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD---PLSR-KVFWLEINVQPGMTP 270
           +PA IP + Y E  RLA  AH+ +GCRG+SR+D  +D   P  + ++  LE+N QPGMT 
Sbjct: 1   MPAPIPAEDYAEACRLAVEAHRVLGCRGVSRADLRYDDTKPGQKPRLIVLEVNTQPGMTA 60

Query: 271 VSIFPEMAAYAGYSFRELLLWMVEDASC 298
            S+ P++A+Y G SF EL+ WMVE A C
Sbjct: 61  TSLVPDIASYCGISFPELVRWMVEQAEC 88


>gi|301167108|emb|CBW26687.1| D-alanine--D-alanine ligase [Bacteriovorax marinus SJ]
          Length = 329

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 87/328 (26%), Positives = 144/328 (43%), Gaps = 37/328 (11%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAG-FKVSQIDVDRSVGLVLAH------------- 48
           +L GG  SE EVSL S       LE    + V ++++  +   V  H             
Sbjct: 6   LLCGGGGSEHEVSLRSANYIYDELEKVNLYNVFKVEIKANGDRVDHHGQLCELRKAGELY 65

Query: 49  -------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
                   K D A   +HG  GE+G++Q+I EL+ +PY       S    +K+ +K  + 
Sbjct: 66  YPSSDQTHKLDFAIPCIHGPPGENGVIQSIFELMGLPYLGCSPEPSQTCFNKVSTKLWLD 125

Query: 102 SCGVPVCPSILVNRFTMDSQHLISPPY------VIKPLKGGSSLGIIVIKKDQSIPLDLL 155
           +  VP  P I ++  + +S       +       IK    GSS+G   +   + +   +L
Sbjct: 126 ALKVPNTPYIYLSDESRESISAAEEFFNANKDVYIKAASQGSSVGCYHVTSLEDLESTIL 185

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYS--SL 209
             S++   + +LIE+ +   EL       +  + +T   EI  P   FY Y+ KYS  S 
Sbjct: 186 --SAFKFSEYVLIERTLKARELEVSAFEYNNEVVITAPGEIICPDG-FYDYDQKYSNDSA 242

Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
             T V    +  +   +++  +  A + +  R +SR DF       KV+  EIN  PGMT
Sbjct: 243 TKTEVNAKGLSAEQINDIKSYSLKAFKGLKLRHLSRIDFFLTE-EGKVYLNEINTFPGMT 301

Query: 270 PVSIFPEMAAYAGYSFRELLLWMVEDAS 297
            +S+FP+M    G  F E L  ++E+++
Sbjct: 302 SISMFPKMMENHGVKFSEYLRKIIEEST 329


>gi|1255019|gb|AAB17900.1| D-alanine:D-alanine ligase [Enterococcus pseudoavium]
          Length = 200

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 54/192 (28%), Positives = 99/192 (51%), Gaps = 15/192 (7%)

Query: 71  ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--SILVNRFTMDSQHLISP-- 126
            LE L++PY  +G++ SA +MDK+ +K ++ + G+P  P   +L N++  + + +     
Sbjct: 1   FLETLDMPYVGAGVMTSACAMDKIMTKYILQAAGIPQVPYVPVLKNQWKENPKQVFDKCE 60

Query: 127 -----PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
                P  IKP   GSS+GI   +  + +   L    ++ +  + L+EQ +D  E+   V
Sbjct: 61  GTLLYPMFIKPANMGSSVGISRAENREELQNAL--KEAYRYDSRALVEQGIDAREIEVAV 118

Query: 182 MGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           +G+  +  T   E+ V +  FY Y  KY        +PA++P ++ ++ +  A LA+  +
Sbjct: 119 LGNDDVRTTLPGEV-VKEVAFYDYNAKYIDNTIQMAIPAEVPKEVMQKAREYAKLAYTML 177

Query: 239 GCRGISRSDFLF 250
           G  G+SR DF  
Sbjct: 178 GGSGLSRCDFFL 189


>gi|330443871|ref|YP_004376857.1| MurC/ddl bifunctional enzyme [Chlamydophila pecorum E58]
 gi|328806981|gb|AEB41154.1| MurC/ddl bifunctional enzyme [Chlamydophila pecorum E58]
          Length = 808

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 85/334 (25%), Positives = 144/334 (43%), Gaps = 46/334 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------------------- 40
           + ++ GG S E E+SL S +  +       +  +   + R                    
Sbjct: 453 IGLVCGGKSCEHEISLLSARHVSHRFSQEYYDCTFFVISRDGLWNVVQDLNTPLPKEQGS 512

Query: 41  ---SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSK 97
              S  +  A L  D    +LHG FGEDG +Q   E+L  PY    +L +A+SMDK+ +K
Sbjct: 513 PVLSSEIAKALLSIDFFLPILHGPFGEDGSIQGFFEILGKPYGGPDLLPAAISMDKLMTK 572

Query: 98  QVVSSCGVPVCPSILVNRFTMDSQ---------HLISPPYVIKPLKGGSSLGIIVIKKDQ 148
           +V S+ GVPV P   ++ F               + + P V+K    GSSLGI ++   +
Sbjct: 573 RVASAVGVPVVPYQELSLFAWKRNPEGCIRSILDIFTFPMVVKSSHLGSSLGIFLVNNKE 632

Query: 149 SIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD-----FYSYE 203
            +   + ++  ++  D  + E  ++  E+    +G        IA P        F  Y 
Sbjct: 633 ELEEKISEAFLYD-TDIFIEESRLESREIEISCIGQPY--SFYIAKPNERRGSQGFIGYH 689

Query: 204 LKY--SSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260
            KY  + ++S  ++   ++P +    V+  A    +AI  +G +R DF  D      +WL
Sbjct: 690 EKYGLNGISSARIIFDLQLPKESENRVKEFAERVFKAIQGKGCARIDFFLDEEGN--YWL 747

Query: 261 -EINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            EIN  PGMT  S F      + +S  ++L +++
Sbjct: 748 SEINPIPGMTASSSFLRAFEQSEWSAEKVLDYLI 781


>gi|7157927|gb|AAF37343.1|AF170804_1 D-alanine:D-alanine ligase [Enterococcus durans]
          Length = 200

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 55/192 (28%), Positives = 99/192 (51%), Gaps = 15/192 (7%)

Query: 71  ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--SILVNRFTMDSQHLISP-- 126
            LE L +PY  +G+L SA +MDK+ +K ++ + GVP  P   +L N++  + + +     
Sbjct: 1   FLETLNLPYVGAGVLTSACAMDKIMTKYILQAGGVPQVPYVPVLKNQWKENPKKVFDQCE 60

Query: 127 -----PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
                P  +KP   GS +GI   K +    L     +++ +  + ++EQ ++  E+   V
Sbjct: 61  GSLLYPMFVKPANMGSGVGIS--KAENREELQNALRTAYQYDSRAIVEQGIEAREIEVAV 118

Query: 182 MGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           +G+  +  T   E+ V    FY Y+ KY +      +PA++P ++Y++ Q  A LA+  +
Sbjct: 119 LGNEDVRTTLPGEV-VKDVAFYDYDAKYINNKIEMQIPAEVPEEVYQKAQEYAKLAYTML 177

Query: 239 GCRGISRSDFLF 250
           G  G+SR DF  
Sbjct: 178 GGSGLSRCDFFL 189


>gi|145299219|ref|YP_001142060.1| D-alanyl-alanine synthetase A [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|189083030|sp|A4SN40|DDL_AERS4 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|142851991|gb|ABO90312.1| D-alanine-D-alanine ligase [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 329

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 98/323 (30%), Positives = 146/323 (45%), Gaps = 45/323 (13%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDA-----GFKVSQIDV---------DRSVGLVLAH 48
           +L GG  SE EVSL S    A+ LE       G +V+++++          R   L L  
Sbjct: 8   LLCGGGGSEHEVSLRS----ANFLEQQLGLVPGVEVTRVEMFADRWFSADGRECKLGLDK 63

Query: 49  L-------KP-DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           L       +P D     +HG  GE G +Q+ LEL  +PY      AS +  +K+ +K  +
Sbjct: 64  LLSFDSVARPVDYVVPCIHGYPGETGDLQSFLELAGLPYLGCDAEASKICFNKISTKLWL 123

Query: 101 SSCGVPVCPSILVNR-----FTMDSQHLISPPYV-IKPLKGGSSLGIIVIKKDQSIPLDL 154
           S+ G+P  P + +        T     L     V IK    GSS+G      +     DL
Sbjct: 124 SAIGIPNTPYLFLTEQNDAALTEAKAALAKWGKVFIKAASQGSSVGCYSASNET----DL 179

Query: 155 LQ--SSSWNHGDQLLIEQYVDGIELTCGV--MGDASLDVT--EIAVPKSDFYSYELKYSS 208
           LQ    ++ + +Q+LIE+ V   EL   V   GD  +     EI VP+  FY+YE KYSS
Sbjct: 180 LQGIKDAFGYSEQVLIEKAVKPRELEVAVYQYGDELIATYPGEICVPQDKFYTYEEKYSS 239

Query: 209 LNSTHV-LPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
            + T   L A+ +       +   A  A + +    +SR DF       ++   EIN  P
Sbjct: 240 ASHTATSLKAEGLTQAQADAIHEYALKAFRQLKLTHLSRIDFFLTE-EGEILLNEINTFP 298

Query: 267 GMTPVSIFPEMAAYAGYSFRELL 289
           GMT +S+FP++  + G+SF   L
Sbjct: 299 GMTSISMFPKLLEHHGHSFAHYL 321


>gi|1814242|gb|AAB41851.1| D-Alanine:D-Alanine ligase [Streptococcus equinus]
          Length = 197

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 61/188 (32%), Positives = 99/188 (52%), Gaps = 12/188 (6%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLIS 125
           LE+L++PY  + IL+S+++MDK+ +K V+ S GVP+   +       + +   +    ++
Sbjct: 2   LEILKMPYVGTNILSSSVAMDKISTKHVLESAGVPLVAYVTYVEGADLEKAVAEVNEKLT 61

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            P  IKP   GSS+GI   K D    L      +  +  ++LIE  V+  E+  G++G+A
Sbjct: 62  YPVFIKPANMGSSVGI--SKADDEEGLRSAIDLALKYDSRILIETGVNAREIEVGILGNA 119

Query: 186 SLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            +  T   E+ V    FY Y+ KY     T  +PA I  +I +E++  A  A +AIG  G
Sbjct: 120 DVQTTLPGEV-VKDVAFYDYDAKYIDNKITMDIPAHIDSNIMEEMRGYATTAFRAIGGCG 178

Query: 243 ISRSDFLF 250
           +SR DF  
Sbjct: 179 LSRCDFFL 186


>gi|13507078|gb|AAK28428.1|AF251259_1 D-alanine-D-X ligase VanD4 [Enterococcus faecium]
          Length = 210

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 57/213 (26%), Positives = 110/213 (51%), Gaps = 10/213 (4%)

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
           EDG +Q +LEL  IPY    I +S + MDK  +  VV + G+ V    ++ +        
Sbjct: 1   EDGCIQGLLELSGIPYVGCDIQSSVICMDKSLAYMVVKNAGIEVPGFRVLQKGDSLEAET 60

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           +S P  +KP + GSS G+  + + + +   + ++  ++   ++L+E+ V G E+ C ++G
Sbjct: 61  LSYPVFVKPARSGSSFGVNKVCRAEELQAAVTEAGKYDS--KILVEEAVSGSEVGCAILG 118

Query: 184 DA----SLDVTEIAVPKSDFYSYEL---KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +     + +V +I +    F  ++    +  S N+   +PA +P ++ +++Q  A   ++
Sbjct: 119 NGNDLITGEVDQIELKHGFFKIHQEAQPEKGSENAVIRVPAALPDEVREQIQETAKKIYR 178

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
            +GCRG++R D LF      +   E+N  PG T
Sbjct: 179 VLGCRGLARID-LFLREDGSIVLNEVNTMPGFT 210


>gi|150019989|ref|YP_001305343.1| D-alanine--D-alanine ligase [Thermosipho melanesiensis BI429]
 gi|149792510|gb|ABR29958.1| D-alanine--D-alanine ligase [Thermosipho melanesiensis BI429]
          Length = 310

 Score = 90.1 bits (222), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 79/296 (26%), Positives = 146/296 (49%), Gaps = 25/296 (8%)

Query: 17  SSGKACASALEDAGFKVSQIDVDRSVGLVLAHL-KPDLAFNVLHGNFGEDGLVQ--AILE 73
           +  K   +A++DA  K  + ++ R     L  + K D  FN+ +    E   V   ++L+
Sbjct: 13  NEEKKMINAIKDAISKKYKCEIVRFDEDFLRKINKYDFVFNLSNKGGKEVKQVHVPSVLD 72

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPL 133
            L IPYT S     A+ +DK+ +K ++    +P     +V+    +  + I   Y++KP 
Sbjct: 73  FLGIPYTSSNTFTHAICLDKITTKIIMKQYNIPTPDFYVVD--VGEIPNYIDGKYIVKPP 130

Query: 134 KGGSSLGIIVIKKDQSIP-LDLLQSSSWNHGDQL----LIEQYVDGIELTCGVMGDASLD 188
           + GS+ GI    KD  +  L+ L+       D+     L+E+++DG E + GV+G+   +
Sbjct: 131 REGSAKGIT---KDSIVDNLEDLKKQVKKIHDEFSQPALVEKFIDGREFSVGVIGNKKPE 187

Query: 189 VTEI------AVPK--SDFYSYELK-YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
           V  I      ++PK    FYSY +K Y    + ++ PA + +D+ K+++  A    + + 
Sbjct: 188 VLPILEIDFSSLPKELERFYSYRVKHYYGEQTRYICPANLDVDLEKKIKYYAQKLFRVLN 247

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPV-SIFPEMAAYAGYSFRELLLWMVE 294
            R  +R D        ++++LE+N  P + PV S   +MA  AG  + +L+L ++E
Sbjct: 248 LRDYARMDLRIK--GGEIYFLEVNSMPQLVPVYSDITKMAKAAGCDYDKLVLKILE 301


>gi|1255021|gb|AAB17901.1| D-alanine:D-alanine ligase [Enterococcus saccharolyticus]
          Length = 200

 Score = 90.1 bits (222), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 55/192 (28%), Positives = 98/192 (51%), Gaps = 15/192 (7%)

Query: 71  ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--SILVNRFTMDSQHLISP-- 126
            LE + +PY  +G+L SA  MDK+ +K ++ S G+P  P   +L N++  + + +     
Sbjct: 1   FLETIRMPYVGAGVLTSACGMDKIMTKYILHSAGIPQVPYVPVLKNQWKENPKQIFEQCE 60

Query: 127 -----PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
                P  +KP   GSS+GI   K +  + L      ++ + ++ +IEQ ++  E+   +
Sbjct: 61  GSLRYPMFVKPANMGSSVGI--SKAENRVELQNALEEAYKYDNRAVIEQGIEAREIEVAI 118

Query: 182 MGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           +G+  +  T   EI V    FY Y  KY   +    +PA++P ++ ++ Q  A LA+  +
Sbjct: 119 LGNEDVRTTMAGEI-VKDVAFYDYNSKYIDNSIVMQIPAQVPDEVQEKAQEYAKLAYTML 177

Query: 239 GCRGISRSDFLF 250
           G  G+SR DF  
Sbjct: 178 GGSGLSRCDFFL 189


>gi|126090206|ref|YP_001041687.1| D-alanyl-alanine synthetase A [Shewanella baltica OS155]
 gi|126174499|ref|YP_001050648.1| D-alanyl-alanine synthetase A [Shewanella baltica OS155]
 gi|125997704|gb|ABN61779.1| D-alanine--D-alanine ligase [Shewanella baltica OS155]
 gi|125999862|gb|ABN63932.1| hypothetical protein Sbal_4569 [Shewanella baltica OS155]
          Length = 337

 Score = 90.1 bits (222), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 83/321 (25%), Positives = 146/321 (45%), Gaps = 37/321 (11%)

Query: 3   VLMGGISSEREVSLSSGKACASAL-EDAGFKVSQIDVD------------------RSVG 43
           +L GG S+E ++SL S     ++L +   F V ++++D                  R + 
Sbjct: 8   LLCGGGSAEHDISLMSANYFETSLAKSEQFSVLRVELDKFGQYRTAAGDDSELTNSREIR 67

Query: 44  LVLAHLKP---DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
                  P   D     +HG  GE G +Q+   L+++PY      AS+   +K+ +K   
Sbjct: 68  FRDESKTPWPVDYVIPCIHGYPGETGDIQSYFNLIQLPYFGCESEASSNCFNKITAKMWF 127

Query: 101 SSCGVPVCPSILVNRFT----MDSQHLISP--PYVIKPLKGGSSLGIIVIKKDQSIPLDL 154
           S+ G+P  P I +N+F       +Q  ++      +K    GSS+G    K D S  +  
Sbjct: 128 SALGIPNTPYIFLNQFDDAAIEQTQAALAQWGSIFVKAASQGSSVG--CYKVDDSDKVAG 185

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVM---GDASLDV-TEIAVPKSDFYSYELKY--SS 208
           +   ++ +   +++E+ +   EL   V    G+    V  EI    + FY+++ KY  +S
Sbjct: 186 VLKDAFGYAPYVIVEKTIKARELEVAVYEYNGEVVATVPGEIICDTNTFYTFDEKYAKNS 245

Query: 209 LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268
              T V+   +  +I ++++  A  A + +  R +SR DF F     ++   EIN  PG 
Sbjct: 246 KARTDVVAQHVSAEISEQIRAYAIKAFKGMKLRHLSRIDF-FLTADNEILLNEINTFPGS 304

Query: 269 TPVSIFPEMAAYAGYSFRELL 289
           TP+S+FP+M    G+ F E L
Sbjct: 305 TPISMFPKMLQNHGHDFTEYL 325


>gi|160875203|ref|YP_001554519.1| D-alanyl-alanine synthetase A [Shewanella baltica OS195]
 gi|189083050|sp|A9L0H9|DDL_SHEB9 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|160860725|gb|ABX49259.1| D-alanine--D-alanine ligase [Shewanella baltica OS195]
 gi|315267396|gb|ADT94249.1| D-alanine/D-alanine ligase [Shewanella baltica OS678]
          Length = 337

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 83/321 (25%), Positives = 146/321 (45%), Gaps = 37/321 (11%)

Query: 3   VLMGGISSEREVSLSSGKACASAL-EDAGFKVSQIDVD------------------RSVG 43
           +L GG S+E ++SL S     ++L +   F V ++++D                  R + 
Sbjct: 8   LLCGGGSAEHDISLMSANYFETSLAKSEQFSVLRVELDKFGQYRTAAGDDCELTNSREIR 67

Query: 44  LVLAHLKP---DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
                  P   D     +HG  GE G +Q+   L+++PY      AS+   +K+ +K   
Sbjct: 68  FRDESKTPWPVDYVIPCIHGYPGETGDIQSYFNLIQLPYFGCESEASSNCFNKITAKMWF 127

Query: 101 SSCGVPVCPSILVNRFT----MDSQHLISP--PYVIKPLKGGSSLGIIVIKKDQSIPLDL 154
           S+ G+P  P I +N+F       +Q  ++      +K    GSS+G    K D S  +  
Sbjct: 128 SALGIPNTPYIFLNQFDDAAIEQTQAALAQWGSIFVKAASQGSSVG--CYKVDDSDKVAG 185

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVM---GDASLDV-TEIAVPKSDFYSYELKY--SS 208
           +   ++ +   +++E+ +   EL   V    G+    V  EI    + FY+++ KY  +S
Sbjct: 186 VLKDAFGYAPYVIVEKTIKARELEVAVYEYNGEVVATVPGEIICDTNTFYTFDEKYAKNS 245

Query: 209 LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268
              T V+   +  +I ++++  A  A + +  R +SR DF F     ++   EIN  PG 
Sbjct: 246 KARTDVVAQHVSAEISEQIRAYAIKAFKGMKLRHLSRIDF-FLTADNEILLNEINTFPGS 304

Query: 269 TPVSIFPEMAAYAGYSFRELL 289
           TP+S+FP+M    G+ F E L
Sbjct: 305 TPISMFPKMLQNHGHDFTEYL 325


>gi|152991773|ref|YP_001357494.1| D-alanyl-alanine synthetase A [Sulfurovum sp. NBC37-1]
 gi|189083062|sp|A6Q6M8|DDL_SULNB RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|151423634|dbj|BAF71137.1| D-alanine-D-alanine ligase [Sulfurovum sp. NBC37-1]
          Length = 346

 Score = 89.4 bits (220), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 82/317 (25%), Positives = 140/317 (44%), Gaps = 47/317 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           +A+L GG S E E+S+ S       L+ +      +  DR   L+               
Sbjct: 3   IAILFGGSSFEHEISIVSAITMKKVLKKSTLTYIFVSADRKFYLIDTEKINSKLFSSGEY 62

Query: 49  -------LKPD------------LAFNVL----HGNFGEDGLVQAILELLEIPYTHSGIL 85
                  LK D            +AF+VL    HG  GEDG V +++E   IPY    + 
Sbjct: 63  KKGKQLVLKNDGFFTKGMFGSKQVAFDVLLNLIHGRDGEDGKVASMMEFFNIPYISPRLE 122

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145
           ASA+S +K+ +K +  S GV   P   +++   D +  +  P +IKP++ GSS+G+ ++K
Sbjct: 123 ASAMSYNKLYTKFLAESLGVKTVPYEHLSK-NGDRKISMEYPVIIKPVRLGSSIGVSIVK 181

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGI----ELTCGVMGDASLDVTEIAVPKSDFYS 201
            +    LD     ++   + +++E ++DG+    +  C   GD  L + E    K +F  
Sbjct: 182 SEAE--LDYALDVAFEFDNDVIVEPFIDGVKEFNQAGCHT-GDWELSIVE-EPQKEEFLD 237

Query: 202 YELKYSSLN-STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260
           +E KY   +  + VL A I  ++   +Q      +  +    I R DF    ++ ++   
Sbjct: 238 FEKKYMDFSRDSQVLSADISEELKNNIQVTFKKIYDPLFMGSIIRCDFFV--VNDEILLN 295

Query: 261 EINVQPGMTPVSIFPEM 277
           EIN  PG     +FP+ 
Sbjct: 296 EINPIPGSMANYLFPDF 312


>gi|172038031|ref|YP_001804532.1| D-alanine--D-alanine ligase [Cyanothece sp. ATCC 51142]
 gi|171699485|gb|ACB52466.1| D-alanine--D-alanine ligase [Cyanothece sp. ATCC 51142]
          Length = 340

 Score = 89.4 bits (220), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 74/245 (30%), Positives = 117/245 (47%), Gaps = 23/245 (9%)

Query: 69  QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPY 128
           +++L+LL IPY  +     AL+ +K ++K +V S GV V    L+ +    +   + PP 
Sbjct: 100 RSLLDLLNIPYLGNTAELMALTANKAKAKAIVRSMGVKVPYGELLRQGNTLN---LRPPV 156

Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVM---GD 184
           VIKP    +SLG+ ++K        L    ++ + DQ+L+E+Y++ G E+ CG +   G+
Sbjct: 157 VIKPDNSDNSLGVTLVKTMDEYEAGL--KKAFEYADQVLVEEYIELGREVRCGTIVKNGE 214

Query: 185 -ASLDVTEIAVPKSDF------------YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
             SL + E AV   D              + EL Y++ +              + VQ +A
Sbjct: 215 LISLPLEEYAVNSKDHPIRNHEDKLKKDDAGELTYAAKDKKKAWIVDSNDPATRRVQEIA 274

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
              HQA+GCR  S  DF  DP  +  F LE  +    +P S+ P MA   G S  ELL  
Sbjct: 275 KQCHQALGCRHYSLFDFRIDPQGQAWF-LEAGLYCSFSPKSVIPMMAQAKGISLNELLEI 333

Query: 292 MVEDA 296
            + +A
Sbjct: 334 AINEA 338


>gi|167947938|ref|ZP_02535012.1| D-alanine--D-alanine ligase [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 128

 Score = 89.4 bits (220), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 52/107 (48%), Positives = 64/107 (59%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG S+EREVSL SG A   AL         +D   ++   L+    D AF VLHG
Sbjct: 12  VAVLMGGCSAEREVSLRSGDAVFQALLRQAIDAHAVDSAENLLEQLSEGGFDRAFIVLHG 71

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV 107
             GEDG VQ  LE + +PYT SG+L SAL MDK R+K + S  G+P 
Sbjct: 72  RGGEDGTVQGALESIGLPYTGSGVLGSALGMDKYRTKALWSGLGLPT 118


>gi|217076423|ref|YP_002334139.1| D-alanine-D-alanine ligase family protein [Thermosipho africanus
           TCF52B]
 gi|217036276|gb|ACJ74798.1| D-alanine-D-alanine ligase family protein [Thermosipho africanus
           TCF52B]
          Length = 312

 Score = 89.4 bits (220), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 75/262 (28%), Positives = 137/262 (52%), Gaps = 26/262 (9%)

Query: 52  DLAFNVLHGNFGEDGL---VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
           D  FN L    G++ +   V A+L+LL IPYT S   + +L +DK+ +K ++    +P  
Sbjct: 49  DFVFN-LSNKGGKETIQVHVPALLDLLNIPYTSSNAYSHSLCLDKITTKIIMQHYNIP-T 106

Query: 109 PSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP-LDLLQSS-SWNHGD-- 164
           P   V       + + +  +++KP + GS+ G   I KD  +  L  LQ    + H +  
Sbjct: 107 PRFYVYDLGQTPEKIDNGTFIVKPPREGSARG---ISKDSVVDNLKALQKMVKYIHEEFK 163

Query: 165 -QLLIEQYVDGIELTCGVMGDA-SLDVTEI------AVPK--SDFYSYELKYSSLNST-H 213
              L+E+++DG EL+ G++G+  SL+V  I       +P+    FYSY +K++    T +
Sbjct: 164 QPALVEEFIDGKELSVGIIGNGDSLEVLPILEIDFSTLPEGLERFYSYNVKHNYGEMTNY 223

Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV-S 272
           + PA+I  ++ ++++  A    + +  R  +R D        ++++LE+N  P + PV S
Sbjct: 224 ICPARISNNVKEKLEFYAKKLFRVLNLRDYARMDVRI--RDDEIYFLEVNSAPQLVPVYS 281

Query: 273 IFPEMAAYAGYSFRELLLWMVE 294
              +MA  AGY + +L+L ++E
Sbjct: 282 DITKMAKAAGYEYDDLILKILE 303


>gi|24373771|ref|NP_717814.1| D-alanyl-alanine synthetase A [Shewanella oneidensis MR-1]
 gi|39930896|sp|Q8EEZ2|DDL_SHEON RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|24348157|gb|AAN55258.1|AE015664_1 D-alanine--D-alanine ligase [Shewanella oneidensis MR-1]
          Length = 336

 Score = 89.4 bits (220), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 68/250 (27%), Positives = 120/250 (48%), Gaps = 15/250 (6%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D     +HG  GE G +Q+   L+++PY      AS+   +K+ +K   S+ G+P  P I
Sbjct: 79  DYVIPCIHGYPGETGDIQSYFNLIQLPYFGCESEASSNCFNKITAKMWFSALGIPNTPYI 138

Query: 112 LVNRFT----MDSQHLISP--PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
            +N++       +Q  +       +K    GSS+G    K D++  +  +   ++ +   
Sbjct: 139 FLNQYDDEAIAQTQAALEKWGSIFVKAASQGSSVG--CYKVDEASKVLGVLKDAFGYAPY 196

Query: 166 LLIEQYVDGIELTCGV---MGDASLDVT-EIAVPKSDFYSYELKY--SSLNSTHVLPAKI 219
           +++E+ +   EL   V    G+    +  EI    + FY+++ KY  SS   T V+   +
Sbjct: 197 VIVEKTIKARELEVAVYEYQGEVIATLPGEIICDSNTFYTFDEKYAKSSKARTDVVAQNV 256

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279
           P DI  +++  A  A + +  R +SR DF F     ++   EIN  PG TP+S+FP+M  
Sbjct: 257 PTDISDQIRAYAIKAFKGMKLRHLSRIDF-FLTADNEILLNEINTFPGSTPISMFPKMLQ 315

Query: 280 YAGYSFRELL 289
             G+ F + L
Sbjct: 316 NHGHDFTQYL 325


>gi|68535999|ref|YP_250704.1| putative D-alanine-D-alanine ligase (fragment) [Corynebacterium
           jeikeium K411]
 gi|68263598|emb|CAI37086.1| putative D-alanine-D-alanine ligase (fragment) [Corynebacterium
           jeikeium K411]
          Length = 202

 Score = 89.0 bits (219), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 58/187 (31%), Positives = 95/187 (50%), Gaps = 16/187 (8%)

Query: 114 NR-FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
           NR  T D Q  +  P  +KP + GSS+GI  +   ++    +    +++H +++++E  +
Sbjct: 10  NRELTEDEQQRLGLPVFVKPARRGSSIGISKVDSWEAFAQAV--EIAFDHDNKMIVESMI 67

Query: 173 DGIELTCGVM----------GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD 222
            G E+ CGV+            A L+ TE       FY ++ KY     T  +PA I  +
Sbjct: 68  HGREVECGVLQYPEGSVIASAPAMLEGTEDG--DEGFYGFDAKYLDNTVTPSIPAPIGEE 125

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAG 282
              EV+RLA    +A+ C G++R DF F   + +V   EIN  PG TP+S++P+M    G
Sbjct: 126 ATAEVRRLAVRTFEALNCEGLARVDF-FVTDNGEVILNEINTLPGFTPISMYPQMFIAGG 184

Query: 283 YSFRELL 289
             + +LL
Sbjct: 185 MEYPQLL 191


>gi|307299025|ref|ZP_07578827.1| D-alanine--D-alanine ligase [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306915450|gb|EFN45835.1| D-alanine--D-alanine ligase [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 315

 Score = 89.0 bits (219), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 75/261 (28%), Positives = 132/261 (50%), Gaps = 17/261 (6%)

Query: 52  DLAFNVLH--GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109
           DL FN+    GN      + A+L+LL IP+T SG  A+AL ++K  +K ++ + G+   P
Sbjct: 49  DLVFNLTTAMGNTERQVHLPAVLDLLGIPFTGSGTTANALCINKTLTKLIMKAYGIS-TP 107

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH---GDQL 166
                R    + +L   P ++KP+K G + GI      +S+  D+ ++ S  H       
Sbjct: 108 EFFSVRPGETADNLPFSPAIVKPVKEGGAKGIWEDSVVESVD-DMQRAVSRIHERFQQPA 166

Query: 167 LIEQYVDGIELTCGVMGDASLDVTEI---AVPK--SDFYSYELK-YSSLNSTHVLPAKIP 220
           L+E++++G E T G++G+  L + EI   ++P     FYSY +K +    + ++ PAKI 
Sbjct: 167 LVERFIEGREFTVGIVGNEVLPIMEIDFSSLPDHLETFYSYRVKQFHGDETNYICPAKIS 226

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP-VSIFPEMAA 279
                 ++  +    Q +  +   R D   D    K+++LE+N  P + P  S   +MA 
Sbjct: 227 RREETVIREFSMRVFQVLDLKDYCRIDLKIDD-EGKIYFLEVNSLPLLVPDYSDIVKMAE 285

Query: 280 YAGYSFRELLLWMVEDASCLR 300
             G+S+ +L+  +V  AS +R
Sbjct: 286 TRGWSYEDLINRIV--ASAIR 304


>gi|283768801|ref|ZP_06341712.1| D-ala D-ala ligase N-terminal domain protein [Bulleidia extructa
           W1219]
 gi|283104587|gb|EFC05960.1| D-ala D-ala ligase N-terminal domain protein [Bulleidia extructa
           W1219]
          Length = 394

 Score = 89.0 bits (219), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 71/265 (26%), Positives = 131/265 (49%), Gaps = 30/265 (11%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           DLA  V+HG  GEDG +Q + E+L+IP+    I  + +  DK+  K ++    +P+ P  
Sbjct: 102 DLAIPVMHGTNGEDGTIQGLFEMLKIPFAGCDIYGAVIGQDKVFQKHILHDNHLPITPWF 161

Query: 112 LV---NRFTMDSQHL-----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
            V   +  T  +Q L     +  P ++KP + GSS+G I I  D    LD  +  +  + 
Sbjct: 162 WVYGQDIETYQTQILEKVNSLGYPVILKPARTGSSIG-ISIAHDNEEYLDCFK-DAMRYD 219

Query: 164 DQLLIEQYVDGI-ELTCGVMGD-----ASLDVTEIAVPKSDFYSYELKYSSLN------- 210
           ++++ E+ +  + E+ C V+GD     AS+ + E+   + +   ++ KY S         
Sbjct: 220 EKIITEKVIKPMREINCSVIGDHTGSRASV-LEEVTQQEKELLDFDKKYGSGGSKGKSGM 278

Query: 211 --STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268
             ++  +PA +  +  K +Q+LA    + +G  G+ R DF+ D  ++K++  EIN  PG 
Sbjct: 279 AATSRQVPAPLSHEETKYIQQLAKDTFRVLGSAGVCRIDFIMDAETKKIYINEINTIPGS 338

Query: 269 TPVSIFPEMAAYAGYSFRELLLWMV 293
               ++ E     G  F +L+  ++
Sbjct: 339 LAFYLWKE----EGVDFSKLMNQLI 359


>gi|330829945|ref|YP_004392897.1| D-alanine--D-alanine ligase [Aeromonas veronii B565]
 gi|328805081|gb|AEB50280.1| D-alanine--D-alanine ligase [Aeromonas veronii B565]
          Length = 329

 Score = 88.6 bits (218), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 93/331 (28%), Positives = 148/331 (44%), Gaps = 45/331 (13%)

Query: 3   VLMGGISSEREVSLSSGKACASALED-----AGFKVSQIDV---------DRSVGLVLAH 48
           +L GG  SE EVSL S    A+ LE      +G +V+++++          R   L L  
Sbjct: 8   LLCGGGGSEHEVSLRS----ANFLEQQLGLLSGVEVTRVEMFADRWLSADGRECKLGLDK 63

Query: 49  L-------KP-DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           L       +P D     +HG  GE G +Q+ LEL  +PY      AS +  +K+ +K  +
Sbjct: 64  LLSFDSVARPVDYVVPCIHGYPGETGDLQSFLELAGLPYLGCDAEASKICFNKISTKLWL 123

Query: 101 SSCGVPVCPSILVNRFTMDSQHLISP------PYVIKPLKGGSSLGIIVIKKDQSIPLDL 154
           S+ G+P  P + +      +               IK    GSS+G      +     DL
Sbjct: 124 SAIGIPNTPYLFLTEQNEAALAEAKAALAKWGKVFIKAASQGSSVGCYSASNEA----DL 179

Query: 155 LQ--SSSWNHGDQLLIEQYVDGIELTCGV--MGDASLDVT--EIAVPKSDFYSYELKYSS 208
           ++  + ++ + +Q+LIE+ V   EL   V   GD  +     EI VP+  FY+YE KYSS
Sbjct: 180 VKGIADAFGYSEQVLIEKAVKPRELEVAVYQYGDELVATYPGEICVPQDKFYTYEEKYSS 239

Query: 209 LNSTHVLPAKIPLDIYK--EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
            + T        L   +   +   A  A + +    +SR DF       ++   EIN  P
Sbjct: 240 ASHTETALRAEGLTQAQADAIHEYALKAFRQLKLTHLSRIDFFLTE-EGEILLNEINTFP 298

Query: 267 GMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           GMT +S+FP++  + G+ F + L  ++  AS
Sbjct: 299 GMTSISMFPKLLEHHGHRFSDYLEQILRKAS 329


>gi|197336773|ref|YP_002158133.1| D-alanine--D-alanine ligase [Vibrio fischeri MJ11]
 gi|226696393|sp|B5ETW5|DDL_VIBFM RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|197314025|gb|ACH63474.1| D-alanine--D-alanine ligase [Vibrio fischeri MJ11]
          Length = 330

 Score = 88.6 bits (218), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 82/326 (25%), Positives = 148/326 (45%), Gaps = 35/326 (10%)

Query: 3   VLMGGISSEREVSLSSGKACASALED-AGFKVSQIDV-DRSVGLVLAHLKPDLAFN---- 56
           +L GG  +E EVSL S K  A  L +   F ++ +++ D     + + LK +L  +    
Sbjct: 6   LLCGGGGTEHEVSLVSSKYIAQQLSELDAFDITHLEIKDEGWFHIESGLKYELRSDKTLL 65

Query: 57  --------------VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS 102
                          +HG  GE G +Q++L++L IPY      +S  S +K+ SK    +
Sbjct: 66  SGETVSSPVDYVVPCIHGYPGETGDIQSMLDMLSIPYLGCDAESSTNSFNKITSKLWYDA 125

Query: 103 CGVPVCPSILVNRFTMDSQHLISPPY------VIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
            G+P  P + +     ++       +       +K    GSS+G   +  ++ +   +  
Sbjct: 126 LGIPNTPYLFLTENNEETHQSALAAFKQWGGLFVKAACQGSSVGCYKVTSEEELAQAI-- 183

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKY-SSLNS 211
           + ++ +  Q+L+E+ V   EL       D  L  T   E+  P   FY+Y+ KY S  +S
Sbjct: 184 NGAFGYSQQVLVEKAVKPRELEVAAYEIDGQLFTTAPGEVTAPDGAFYTYDEKYGSGSHS 243

Query: 212 THVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270
           T  L A+ +  +  K + + +      +  + +SR DF       +++  E+N  PGMTP
Sbjct: 244 TTSLDAQNLTEEQVKLIDQYSRKVFTQMKLKDLSRIDFFLTD-DNEIYLNEVNTFPGMTP 302

Query: 271 VSIFPEMAAYAGYSFRELLLWMVEDA 296
           +S+FP++  + G  F+  L   V +A
Sbjct: 303 ISMFPKLLEHNGDCFKTFLQKAVLNA 328


>gi|304408639|ref|ZP_07390260.1| D-alanine/D-alanine ligase [Shewanella baltica OS183]
 gi|307305468|ref|ZP_07585216.1| D-alanine/D-alanine ligase [Shewanella baltica BA175]
 gi|304352460|gb|EFM16857.1| D-alanine/D-alanine ligase [Shewanella baltica OS183]
 gi|306911771|gb|EFN42196.1| D-alanine/D-alanine ligase [Shewanella baltica BA175]
          Length = 337

 Score = 88.6 bits (218), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 82/321 (25%), Positives = 146/321 (45%), Gaps = 37/321 (11%)

Query: 3   VLMGGISSEREVSLSSGKACASAL-EDAGFKVSQIDVD------------------RSVG 43
           +L GG S+E ++SL S     ++L +   F V ++++D                  R + 
Sbjct: 8   LLCGGGSAEHDISLMSANYFETSLAKSEQFSVLRVELDKFGQYRTTAGDDCELTNSREIR 67

Query: 44  LVLAHLKP---DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
                  P   D     +HG  GE G +Q+   L+++PY      AS+   +K+ +K   
Sbjct: 68  FRDESKTPWPVDYVIPCIHGYPGETGDIQSYFNLIQLPYFGCESEASSNCFNKITAKMWF 127

Query: 101 SSCGVPVCPSILVNRFT----MDSQHLISP--PYVIKPLKGGSSLGIIVIKKDQSIPLDL 154
           S+ G+P  P I +N+F       +Q  ++      +K    GSS+G    K D S  +  
Sbjct: 128 SALGIPNTPYIFLNQFDDAAIEQTQAALAQWGSIFVKAASQGSSVG--CYKVDDSDKVAG 185

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVM---GDASLDV-TEIAVPKSDFYSYELKY--SS 208
           +   ++ +   +++E+ +   EL   V    G+    V  EI    + FY+++ KY  +S
Sbjct: 186 VLKDAFGYAPYVIVEKTIKARELEVAVYEYNGEVVATVPGEIICDTNTFYTFDEKYAKNS 245

Query: 209 LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268
              T V+   +  +I ++++  +  A + +  R +SR DF F     ++   EIN  PG 
Sbjct: 246 KARTDVVAQHVSAEISEQIRAYSIKAFKGMKLRHLSRIDF-FLTADNEILLNEINTFPGS 304

Query: 269 TPVSIFPEMAAYAGYSFRELL 289
           TP+S+FP+M    G+ F E L
Sbjct: 305 TPISMFPKMLQNHGHDFTEYL 325


>gi|67921325|ref|ZP_00514844.1| D-alanine--D-alanine ligase [Crocosphaera watsonii WH 8501]
 gi|67857442|gb|EAM52682.1| D-alanine--D-alanine ligase [Crocosphaera watsonii WH 8501]
          Length = 340

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 80/262 (30%), Positives = 129/262 (49%), Gaps = 31/262 (11%)

Query: 57  VLHGNFGEDGLVQ--AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
           VL   F   G+ Q  A+ +LL+IPY  +     AL+  K ++K +V + GV V    L+ 
Sbjct: 86  VLPQMFCLPGMTQYRALFDLLKIPYLGNKAELMALTAHKAKAKAIVRATGVKVPYGELLR 145

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS---SSWNHGDQLLIEQY 171
               D+ +L  PP VIKP    +SLGI +++      +D  Q+    ++ + D++L+E+Y
Sbjct: 146 --NSDTPNL-RPPVVIKPANADNSLGITLVRT-----MDEYQAGLEKAFQYADEVLVEEY 197

Query: 172 VD-GIELTCG-VMGDA---SLDVTEIAVPKSD--FYSYE----------LKYSSLNSTHV 214
           ++ G E+ CG ++ D    SL + E AV + +    +YE          L Y++ +    
Sbjct: 198 IELGREVRCGTIVKDGELISLPLEEYAVNQENNPIRNYEDKLKRDDTGELTYAAKDKKKA 257

Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274
               I     + VQ +A   HQA+GCR  S  DF  DP  +  F LE  +    +P S+ 
Sbjct: 258 WIVDIKDPATRRVQEIAKQCHQALGCRHYSLFDFRIDPQGQPWF-LEAGLYCSFSPKSVI 316

Query: 275 PEMAAYAGYSFRELLLWMVEDA 296
             MA   G S  ELL  ++++A
Sbjct: 317 SMMAQAKGISLDELLEIVIKEA 338


>gi|120599029|ref|YP_963603.1| D-alanyl-alanine synthetase A [Shewanella sp. W3-18-1]
 gi|189083057|sp|A1RK54|DDL_SHESW RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|120559122|gb|ABM25049.1| D-alanine--D-alanine ligase [Shewanella sp. W3-18-1]
          Length = 337

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 82/327 (25%), Positives = 151/327 (46%), Gaps = 37/327 (11%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAG-FKVSQIDVD------------------RSVG 43
           +L GG S+E ++SL S     S+L  +  F V ++++D                  R + 
Sbjct: 8   LLCGGGSAEHDISLMSANYFESSLAKSDQFSVLRVELDKLGQYRTAAGDECELTNNREIR 67

Query: 44  LVLAHLKP---DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
                  P   D     +HG  GE G +Q+   L+++PY      AS+   +K+ +K   
Sbjct: 68  FRDETKAPWPVDYVIPCIHGYPGETGDIQSYFNLIQLPYFGCESEASSNCFNKITAKMWF 127

Query: 101 SSCGVPVCPSILVNRFTMD----SQHLISP--PYVIKPLKGGSSLGIIVIKKDQSIPLDL 154
           S+ G+P  P I ++++  +    +Q  ++      IK    GSS+G    K D S  +  
Sbjct: 128 SALGIPNTPYIFLHQYDDEAISQAQTALANWGSIFIKAASQGSSVG--CYKVDDSSKVAQ 185

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKY--SS 208
           +   ++ +   +++E+ +   EL   V   +  +  T   EI    + FY+++ KY  SS
Sbjct: 186 VLKDAFGYAPYVVVEKTIKARELEVAVYEYNGEIVATLPGEIICDTNTFYTFDEKYAKSS 245

Query: 209 LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268
              T V+   + +++ ++++  A  A + +  R +SR DF F     ++   EIN  PG 
Sbjct: 246 KARTDVVAKDVSVELSEQIRAYAIKAFKGMKLRHLSRIDF-FLTAENEILLNEINTFPGS 304

Query: 269 TPVSIFPEMAAYAGYSFRELLLWMVED 295
           TP+S+FP+M    G+ F E L  ++ +
Sbjct: 305 TPISMFPKMLQNHGHDFTEYLSLVINN 331


>gi|319426570|gb|ADV54644.1| D-alanine/D-alanine ligase [Shewanella putrefaciens 200]
          Length = 337

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 82/321 (25%), Positives = 148/321 (46%), Gaps = 37/321 (11%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAG-FKVSQIDVD------------------RSVG 43
           +L GG S+E ++SL S     S+L  +  F V ++++D                  R + 
Sbjct: 8   LLCGGGSAEHDISLMSANYFESSLAKSDQFSVLRVELDKLGQYRTAAGDDCELTNNREIR 67

Query: 44  LVLAHLKP---DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
                  P   D     +HG  GE G +Q+   L+++PY      AS+   +K+ +K   
Sbjct: 68  FRDETKAPWPVDYVIPCIHGYPGETGDIQSYFNLIQLPYFGCESEASSNCFNKITAKMWF 127

Query: 101 SSCGVPVCPSILVNRFTMD----SQHLISP--PYVIKPLKGGSSLGIIVIKKDQSIPLDL 154
           S+ G+P  P I ++++  +    +Q  ++      IK    GSS+G    K D S  +  
Sbjct: 128 SALGIPNTPYIFLHQYDDEAISQAQTALADWGSIFIKAASQGSSVG--CYKVDDSSKVAQ 185

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKY--SS 208
           +   ++ +   +++E+ +   EL   V   +  +  T   EI    + FY+++ KY  SS
Sbjct: 186 VLKDAFGYAPYVVVEKTIKARELEVAVYEYNGEIVATLPGEIICDTNTFYTFDEKYAKSS 245

Query: 209 LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268
              T V+   + +++ ++++  A  A + +  R +SR DF F     ++   EIN  PG 
Sbjct: 246 KARTDVVAKDVSVELSEQIRAYAIKAFKGMKLRHLSRIDF-FLTAENEILLNEINTFPGS 304

Query: 269 TPVSIFPEMAAYAGYSFRELL 289
           TP+S+FP+M    G+ F E L
Sbjct: 305 TPISMFPKMLQNHGHDFTEYL 325


>gi|146292900|ref|YP_001183324.1| D-alanyl-alanine synthetase A [Shewanella putrefaciens CN-32]
 gi|189083054|sp|A4Y6E2|DDL_SHEPC RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|145564590|gb|ABP75525.1| D-alanine--D-alanine ligase [Shewanella putrefaciens CN-32]
          Length = 337

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 82/321 (25%), Positives = 148/321 (46%), Gaps = 37/321 (11%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAG-FKVSQIDVD------------------RSVG 43
           +L GG S+E ++SL S     S+L  +  F V ++++D                  R + 
Sbjct: 8   LLCGGGSAEHDISLMSANYFESSLAKSDQFSVLRVELDKLGQYRTAAGDDCELTNNREIR 67

Query: 44  LVLAHLKP---DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
                  P   D     +HG  GE G +Q+   L+++PY      AS+   +K+ +K   
Sbjct: 68  FRDETKAPWPVDYVIPCIHGYPGETGDIQSYFNLIQLPYFGCESEASSNCFNKITAKMWF 127

Query: 101 SSCGVPVCPSILVNRFTMD----SQHLISP--PYVIKPLKGGSSLGIIVIKKDQSIPLDL 154
           S+ G+P  P I ++++  +    +Q  ++      IK    GSS+G    K D S  +  
Sbjct: 128 SALGIPNTPYIFLHQYDDEAISQAQTALANWGSIFIKAASQGSSVG--CYKVDDSSKVAQ 185

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKY--SS 208
           +   ++ +   +++E+ +   EL   V   +  +  T   EI    + FY+++ KY  SS
Sbjct: 186 VLKDAFGYAPYVVVEKTIKARELEVAVYEYNGEIVATLPGEIICDTNTFYTFDEKYAKSS 245

Query: 209 LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268
              T V+   + +++ ++++  A  A + +  R +SR DF F     ++   EIN  PG 
Sbjct: 246 KARTDVVAKDVSVELSEQIRAYAIKAFKGMKLRHLSRIDF-FLTAENEILLNEINTFPGS 304

Query: 269 TPVSIFPEMAAYAGYSFRELL 289
           TP+S+FP+M    G+ F E L
Sbjct: 305 TPISMFPKMLQNHGHDFTEYL 325


>gi|167749950|ref|ZP_02422077.1| hypothetical protein EUBSIR_00918 [Eubacterium siraeum DSM 15702]
 gi|167657117|gb|EDS01247.1| hypothetical protein EUBSIR_00918 [Eubacterium siraeum DSM 15702]
          Length = 354

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 66/254 (25%), Positives = 118/254 (46%), Gaps = 16/254 (6%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D  F VLHG +GEDG VQ + +L  +P   +   A+AL  D+     V+S   + V  ++
Sbjct: 98  DAVFPVLHGKYGEDGRVQGLCKLAGLPVIGNDFAAAALCNDRRIMDLVLSDSNIKVIENV 157

Query: 112 LVNRFTMDSQHL--------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
            ++R  M+            +S P    P    +S+G    + +    L+    +S++H 
Sbjct: 158 TLHRSEMNDMTAAIKKITGKLSFPIYTAPTSCSTSVG--ACRAENEKELEEAIKASFSHH 215

Query: 164 DQLLIEQYVDGIELTCGVMG----DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI 219
             ++ E  V G ELTC V+G    D  + + E+ V   D      +Y +  S   +PAK+
Sbjct: 216 PYIIAESAVKGRELTCAVLGAKHHDERVAIGEL-VRTDDSIDKLSEYIASTSELKVPAKL 274

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279
                 ++++ A  A+ A+ C+  +R D + D    +V+   +   PG+   SIF  +  
Sbjct: 275 DGLTQNKIKQTARAAYDALSCKCFARVDMVLDN-DGEVYVRRVRGIPGLDRQSIFTRLVT 333

Query: 280 YAGYSFRELLLWMV 293
            + YS+ E+L  ++
Sbjct: 334 ESTYSYEEMLRMLI 347


>gi|7157937|gb|AAF37348.1| D-alanine:D-alanine ligase [Tetragenococcus solitarius]
          Length = 200

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 54/195 (27%), Positives = 102/195 (52%), Gaps = 23/195 (11%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP----- 126
           LE +++PY  +G++ SA SMDK+ +K ++ +  +P  P + V    + SQ   +P     
Sbjct: 2   LETIDMPYVGAGVMTSASSMDKIMTKYILHAVDIPQVPYVPV----LKSQWKENPKKIFE 57

Query: 127 --------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                   P  +KP   GSS+G+      + +   L+++  + +  +++IEQ ++  E+ 
Sbjct: 58  QCEGTLLYPMFVKPANMGSSVGMAKANDRKELQEALIEA--YRYDSRVVIEQSIEAREIE 115

Query: 179 CGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
             ++G+  +  T   EI V +  FY Y  KY   N    +PA+IP ++ ++ +  A +A+
Sbjct: 116 VAILGNEDVRTTLPGEI-VKEEAFYDYNSKYIDNNIKMQIPAQIPEEVQQKAREYATIAY 174

Query: 236 QAIGCRGISRSDFLF 250
            ++G RG+SR DF  
Sbjct: 175 TSLGGRGLSRCDFFL 189


>gi|21227150|ref|NP_633072.1| D-alanine-D-alanine ligase-like protein [Methanosarcina mazei Go1]
 gi|20905483|gb|AAM30744.1| D-alanine-D-alanine ligase related protein [Methanosarcina mazei
           Go1]
          Length = 700

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 79/261 (30%), Positives = 120/261 (45%), Gaps = 23/261 (8%)

Query: 50  KPDLAFNVLHGNFGEDGL----VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV 105
           K DL  N+    F  D +    V A+ E L IPYT +G    A   DK   + V     +
Sbjct: 371 KTDLVLNLCDEGFYNDPVKELHVPAMFEQLNIPYTGAGPQCLAYCYDKSLVRGVAREMRI 430

Query: 106 PVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGII---VIKKDQSIPLDLLQSSSWNH 162
           PV   +LV   +  S+  +S P ++KP  G SS GI    ++   + + LD+++ +    
Sbjct: 431 PVAKGVLVTDDSDISRLSLSFPLLVKPNSGDSSFGITQKSIVHSREEL-LDIMKETREKI 489

Query: 163 GDQ--LLIEQYVDGIELTCGVMGD----ASLDVTE---IAVPKS--DFYSYELKY---SS 208
           G    LL+E+++ G +++ G++G+      L +TE    AVP        YE K+   SS
Sbjct: 490 GSDKPLLLEEFLPGKDISVGIIGNPPSCTVLPITEEDYSAVPGELPKICGYEAKWLPDSS 549

Query: 209 LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268
                 +PA +P    KEV R        +GCR  +R D+  D   R    LE+N  PG 
Sbjct: 550 YWKIKSVPADLPEKTQKEVVRSCLALFTRLGCRDYARFDWRLDAEGRPRL-LEVNPNPGW 608

Query: 269 TPVSIFPEMAAYAGYSFRELL 289
                  +MAAYA  S+  +L
Sbjct: 609 CWDGHLAKMAAYANISYSGML 629


>gi|1255013|gb|AAB17897.1| D-alanine:D-alanine ligase [Enterococcus avium]
          Length = 200

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 53/192 (27%), Positives = 97/192 (50%), Gaps = 15/192 (7%)

Query: 71  ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--SILVNRFTMDSQHLISP-- 126
            LE L++PY  +G++ SA +MDK+ +K ++ + G+P  P   +L N++  + + +     
Sbjct: 1   FLETLDMPYVGAGVMTSACAMDKIMTKYILQAAGIPQVPYVPVLKNQWKENPKQIFDKCE 60

Query: 127 -----PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
                P  +KP   GSS+GI   +  + +   L    ++ +  + L+EQ +D  E+   V
Sbjct: 61  GTLLYPMFVKPANMGSSVGISRAENREELQNAL--QEAYRYDSRALVEQGIDACEIEVAV 118

Query: 182 MGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           +G+  +  T   E+ V +  FY Y  KY +      +PA +P D+ ++ +  A  A   +
Sbjct: 119 LGNDDVRTTLPGEV-VKEEAFYDYNAKYINNTIQMAIPADVPEDVMQKARDFAKSAISML 177

Query: 239 GCRGISRSDFLF 250
           G  G+SR DF  
Sbjct: 178 GGSGLSRCDFFL 189


>gi|317128999|ref|YP_004095281.1| D-alanine--D-alanine ligase [Bacillus cellulosilyticus DSM 2522]
 gi|315473947|gb|ADU30550.1| D-alanine--D-alanine ligase [Bacillus cellulosilyticus DSM 2522]
          Length = 714

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 74/310 (23%), Positives = 144/310 (46%), Gaps = 19/310 (6%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQIDVDRSV--------GLVLAHLKPDLAFNVL 58
           G  +  +  L + K   + L   G +V   + D+++          V++  +P L FN+ 
Sbjct: 19  GTPNREKYGLETIKNIKNGLLAGGHQVKTFEGDKNIINKLEDFMPSVISGERPGLVFNLS 78

Query: 59  HGNFGEDGL--VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116
           +G  G+     V  ILE++ +PY  SG    AL++DK+ +K ++   G+P     +++  
Sbjct: 79  YGIQGKGRYMHVPGILEMIGVPYVGSGPETHALALDKVVTKMILLQKGLPTPKFTVLDNP 138

Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
                  +S P ++KP     S G+ ++  ++ +  D +++         L+E+Y++G E
Sbjct: 139 DSKFHEDLSYPLIVKPKNEAVSFGLKIVNNEEEL-RDGVKTIYEKFNSPTLVEEYIEGRE 197

Query: 177 LTCGVMGDASLD----VTEIAVPKSDFYSYELKYSSLNST--HVLPAKIPLDIYKEVQRL 230
           +  G++G+  ++    V  +       Y++E K +    T   V PA I  ++ K+VQ+L
Sbjct: 198 VNVGLLGNNPVEALPPVELVFGEGPQIYTFEDKKNKSGRTVEKVCPAPISEELTKKVQQL 257

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +A+ C   +R DF  D      + LE+N    +     F   A   G ++ +L+ 
Sbjct: 258 AIDTFKALDCYDTARVDFRIDKEGNP-YILEVNSMASLGADGSFVFAADKVGLNYSDLMN 316

Query: 291 WMVEDASCLR 300
            +V D +C R
Sbjct: 317 RIV-DITCER 325


>gi|225850791|ref|YP_002731025.1| D-alanine--D-alanine ligase [Persephonella marina EX-H1]
 gi|225645232|gb|ACO03418.1| D-alanine--D-alanine ligase [Persephonella marina EX-H1]
          Length = 325

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 69/254 (27%), Positives = 122/254 (48%), Gaps = 16/254 (6%)

Query: 53  LAFNVLHGNFGED--GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
           + FN+ +G  GED    + ++LE+L +PYT S      L++DK  +K ++    +P  P 
Sbjct: 68  IVFNLSYGIQGEDRYAHIPSLLEMLGVPYTGSSPEGHTLALDKAVTKILLKYYDIP-TPD 126

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
             V   +      +  P ++KPLK   SLGI V+K    +   + + +   H D  ++E+
Sbjct: 127 FHVFSPSDHDFSNVRFPAIVKPLKEALSLGITVVKDTDQMKKAVSRITEEFHQDA-IVEE 185

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDF--------YSYELKYSSLNSTHVLPAKIPLD 222
           ++ G E + G++G+   DV  + V + DF         +Y  ++  +    + PA IP  
Sbjct: 186 FIRGREFSVGLIGNDE-DVETLPVLEFDFGGDPDAIQTTYLKRHKPIEK--ICPADIPEK 242

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAG 282
             K +Q L+      +G R  +R+D   D L   ++ LEIN Q  +     F   A  AG
Sbjct: 243 TAKRMQELSKKVFHVLGLRDYARTDIRMD-LEGNIYILEINSQASLGETGSFVTAAKTAG 301

Query: 283 YSFRELLLWMVEDA 296
           Y++ +L+  ++  A
Sbjct: 302 YTYEDLIEKILNTA 315


>gi|213853003|ref|ZP_03382535.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Typhi str. M223]
          Length = 269

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 65/266 (24%), Positives = 120/266 (45%), Gaps = 53/266 (19%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------A 47
           + ++ GG S+E EVSL S K    A++   F V  + +D++    +             A
Sbjct: 6   VGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGIDKAGQWHVNDAENYLQNADDPA 65

Query: 48  H--LKP----------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
           H  L+P                            D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  HIALRPSAISLAQVPGKHQHQLINAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVIK 131
           P+  S +L+SA  MDK  +K+++   G+ + P I + R    +      +  +  P  +K
Sbjct: 126 PFVGSDVLSSAACMDKDVAKRLLRDAGLNIAPFITLTRTNRHAFSFAEVESRLGLPLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  +  +      +  +  ++H  ++++EQ + G E+ C V+G+ +   + 
Sbjct: 186 PANQGSSVGVSKVANEAQYQQAVALAFEFDH--KVVVEQGIKGREIECAVLGNDNPQAST 243

Query: 192 IA--VPKSDFYSYELKYSSLNSTHVL 215
               V  S+FY+Y+ KY   N   V+
Sbjct: 244 CGEIVLNSEFYAYDTKYIDDNGAQVV 269


>gi|1814244|gb|AAB41852.1| D-Alanine:D-Alanine ligase [Streptococcus gordonii]
          Length = 197

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 99/188 (52%), Gaps = 12/188 (6%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV------NRFTMDSQHLIS 125
           LE+L++PY    IL+S+L+MDK+ +K+V+ S G+   P + V       +   + +  +S
Sbjct: 2   LEVLKMPYVGCNILSSSLAMDKITTKRVLESAGIAQVPYVAVVDGEDLEQKIQEIEEKLS 61

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            P   KP   GSS+GI   K D    L      ++ +  ++L+EQ V   E+  G++G+ 
Sbjct: 62  YPVFTKPSNMGSSVGI--SKSDNQEELRASLDLAFKYDSRVLVEQGVTAREIEVGLLGNT 119

Query: 186 SLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            +  +   E+ V    FY Y+ KY     T  +PA++P  +   +++ A  A +AIG  G
Sbjct: 120 DVKSSLPGEV-VKDVAFYDYQAKYIDNKITMAIPAQLPEGVVNTMRQNAETAFRAIGGLG 178

Query: 243 ISRSDFLF 250
           +SR DF +
Sbjct: 179 LSRCDFFY 186


>gi|294141187|ref|YP_003557165.1| D-alanine--D-alanine ligase [Shewanella violacea DSS12]
 gi|293327656|dbj|BAJ02387.1| D-alanine--D-alanine ligase [Shewanella violacea DSS12]
          Length = 336

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 72/250 (28%), Positives = 121/250 (48%), Gaps = 16/250 (6%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D     +HG  GE G +Q+  EL+++PY      AS    +K+ +K   S+ G+P  P I
Sbjct: 79  DYVIPCIHGYPGETGDIQSYFELIKLPYFGCDSEASRNCFNKVTAKMWFSALGIPNTPYI 138

Query: 112 LVNRFTMDS-----QHLISPPYV-IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
            +N F  D+     Q L S   + IK    GSS+G   +   + +   L Q  ++ +   
Sbjct: 139 FLNDFNDDAINQAQQALASWGSIFIKAASQGSSVGCYRVDSPEELTESLKQ--AFTYSPY 196

Query: 166 LLIEQYVDGIELTCGVM-GDASLDVT---EIAVPKSDFYSYELKY--SSLNSTHVLPAKI 219
           +++E+ ++  EL   V   D  +  T   EI    + FY+++ KY  +S   T V+ A I
Sbjct: 197 VIVEKTIEARELEVAVYEKDGEIIATQPGEIICGTNTFYTFDEKYAENSQAETKVV-ADI 255

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279
              + +E++  A    + +    +SR DF F     ++   EIN  PG+TP+S+FP+M  
Sbjct: 256 SESVSQEIREYAVKVFKGMKLSHLSRIDF-FLTADNEILLNEINTFPGLTPISMFPKMLQ 314

Query: 280 YAGYSFRELL 289
             G +F + L
Sbjct: 315 NHGDNFSDYL 324


>gi|91793706|ref|YP_563357.1| D-alanyl-alanine synthetase A [Shewanella denitrificans OS217]
 gi|122968653|sp|Q12LP2|DDL_SHEDO RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|91715708|gb|ABE55634.1| D-alanine--D-alanine ligase [Shewanella denitrificans OS217]
          Length = 335

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 84/322 (26%), Positives = 145/322 (45%), Gaps = 39/322 (12%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAG-FKVSQIDVD------------------RSVG 43
           +L GG  +E ++SL S +   ++L  +  F V  + +D                  R + 
Sbjct: 8   LLCGGGGAEHDISLMSARFFETSLAKSDQFSVLTLTLDKQGRYHTQDGNLCSLTNRREIR 67

Query: 44  LVLAHLKP---DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
                + P   D     +HG  GE G +Q+   L+++PY      AS+   +K+ +K   
Sbjct: 68  FEDPSIAPWAVDYVIPCIHGFPGETGDIQSYFNLIQLPYFGCESEASSNCFNKITAKMWF 127

Query: 101 SSCGVPVCPSILVNRFTMDSQHLISPPY------VIKPLKGGSSLGIIVIKKDQSIPLDL 154
           S+ GVP  P I +++F  ++       +       IK    GSS+G   +    +I   L
Sbjct: 128 SALGVPNTPYIFLHQFDQEAIAQTQAAFDTWGSVFIKAASQGSSVGCYKVDVRDNIAKVL 187

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGV---MGD--ASLDVTEIAVPKSDFYSYELKYS-- 207
               ++ +   +++E+ +   EL   V    GD  A+L   EI    + FYS++ KY+  
Sbjct: 188 --EEAFGYAPYVVVEKTIKARELEVAVYEYQGDIIATLP-GEIICDTNKFYSFDEKYAKD 244

Query: 208 SLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPG 267
           S   T V+ + +   +  ++Q  A  A + +  R +SR DF F     ++   EIN  PG
Sbjct: 245 SKARTDVVASNLSPKLCLQIQDYAIKAFKGMKLRHLSRIDF-FLTQDDEILLNEINTFPG 303

Query: 268 MTPVSIFPEMAAYAGYSFRELL 289
           +TP+S+FP+M    G+ F E L
Sbjct: 304 LTPISMFPKMLQNHGHDFTEYL 325


>gi|2245424|gb|AAC16915.1| D-alanine:D-alanine ligase [Streptococcus constellatus]
          Length = 197

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 60/191 (31%), Positives = 104/191 (54%), Gaps = 18/191 (9%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV------NRFTMDSQHLIS 125
           LE+L++PY    IL+S+++MDK+ +K+V++S G+P  P + V      +    + +  ++
Sbjct: 2   LEVLKMPYVGCNILSSSVAMDKITTKRVLASAGIPQVPYVAVIEGENIDEKIAEVEANLT 61

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS---SWNHGDQLLIEQYVDGIELTCGVM 182
            P   KP   GSS+GI      +S   D L+S+   ++ +  ++LIEQ V+  E+  G++
Sbjct: 62  YPVFTKPSNMGSSVGI-----SKSENQDELRSALELAFKYDSRVLIEQGVNAREIEVGLL 116

Query: 183 GDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
           G+     +   E+ V    FY YE KY     T  +PAK+  D+   +++ A  A  AIG
Sbjct: 117 GNEGAKSSWPGEV-VKDVAFYDYEAKYIDNKITMDIPAKLSEDVIVTMRQYAEKAFHAIG 175

Query: 240 CRGISRSDFLF 250
             G++R DF +
Sbjct: 176 GVGLARCDFFY 186


>gi|315105143|gb|EFT77119.1| D-ala D-ala ligase [Propionibacterium acnes HL050PA2]
          Length = 197

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 55/183 (30%), Positives = 98/183 (53%), Gaps = 14/183 (7%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62
           VL GG+S +R++SL SG+  A AL   G +V + D+D ++   L      + F +LHG  
Sbjct: 7   VLAGGLSHQRDISLKSGRTVAQALRRVGHEVVEADIDSALIETLRANNGAVVFPMLHGGL 66

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFTMD 119
           GE+G +  +L+L++IPY  S      +S DK  + + V++ GV V P  +    N F   
Sbjct: 67  GENGALLEVLQLMDIPYVGSSPATCRISFDKSIASRAVAAAGV-VTPQQVALPHNVFREL 125

Query: 120 SQHLI--------SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
              ++        S P ++KP  GGSSLG+  +     +P  +  ++++ + D +++E++
Sbjct: 126 GAQMVMRSIAEKFSLPVIVKPAHGGSSLGVTKVDGVDDLPQAV--ANAYAYDDMVVVEEF 183

Query: 172 VDG 174
           + G
Sbjct: 184 IVG 186


>gi|218886343|ref|YP_002435664.1| D-alanine--D-alanine ligase [Desulfovibrio vulgaris str. 'Miyazaki
           F']
 gi|218757297|gb|ACL08196.1| D-alanine--D-alanine ligase [Desulfovibrio vulgaris str. 'Miyazaki
           F']
          Length = 408

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 96/384 (25%), Positives = 153/384 (39%), Gaps = 89/384 (23%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------------------- 40
           +AV  GG S E +VS+ +G     AL+ A ++   + VDR                    
Sbjct: 8   VAVFFGGRSPEHDVSIVTGLQVIQALDAAQYEPVPVYVDRCGVWRTGEKLLDRATYIPAR 67

Query: 41  ------SVGLVLAHLKP-------------------DLAFNVLHGNFGEDGLVQAILELL 75
                 +V L +A  K                    D+A    HG +GEDG +Q + E +
Sbjct: 68  DADGLPAVSLEIAPGKGGMLVEQTSKLFGKPRRIPFDVAIPAFHGPYGEDGDMQGLFEAV 127

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---------SILVNRFTMDSQHL-IS 125
            IPYT   +LASA+ MDK  +KQ ++  G+P+ P          +L  R  +++    I+
Sbjct: 128 GIPYTGMRVLASAIFMDKAATKQALAGTGIPMLPCAVLRKPVGGLLPPRADIEAALAGIT 187

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGD 184
            P  +KP   GSS+G  V K D    ++ +    + +    ++E Y+DG +E    V  D
Sbjct: 188 LPGCLKPAHLGSSIG--VAKVDSIEDIEAVLPGLFRNDTVAIVEPYLDGCVEYNISVRRD 245

Query: 185 ASLDVTE-IAVPKSD--FYSYELKY--------------------------SSLNSTHVL 215
                T  I  PK D     +  KY                            L+ T  +
Sbjct: 246 GEGHATSAIERPKRDSELLDFRQKYLSSGGKTGSKTGGMGGTKSAGDSGSAGMLSLTREI 305

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275
              +P  +   ++  A   + A G  G  R DF++D    +V+  E+N  PG    + F 
Sbjct: 306 NPDLPESLEGRIRDFAVRTYAAFGGTGAPRMDFMYDATRDEVWLNEVNPIPGS--FAFFL 363

Query: 276 EMAAYAGYSFRELLLWMVEDASCL 299
             AA +   F  LL  M+++A  +
Sbjct: 364 WEAAESPIRFTRLLSLMIDEARAM 387


>gi|127513061|ref|YP_001094258.1| D-alanyl-alanine synthetase A [Shewanella loihica PV-4]
 gi|189083052|sp|A3QEV1|DDL_SHELP RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|126638356|gb|ABO23999.1| D-alanine--D-alanine ligase [Shewanella loihica PV-4]
          Length = 334

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 67/257 (26%), Positives = 118/257 (45%), Gaps = 18/257 (7%)

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV 105
           LA    D     +HG  GE G +Q+  EL+ +PY       S    +K+ +K   S+ G+
Sbjct: 73  LAPWPVDYVIPCIHGYPGETGDIQSYFELINLPYFGCDAEGSRNCFNKITAKMWFSALGI 132

Query: 106 PVCPSILVNRFTMDSQHLISPP--------YVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
           P  P + +N+  +D Q +              +K    GSS+G   +     IP  L  +
Sbjct: 133 PNTPYLFLNQ--LDEQAIAQTTDALAKWGSVFVKAASQGSSVGCYRVDDAAQIPAIL--A 188

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT----EIAVPKSDFYSYELKYSS-LNST 212
            ++++   +++E+ +   EL   V       V     E+      FY+Y+ KY++   +T
Sbjct: 189 DAFHYSPYVVVEKTIQARELEVAVYQYRGETVATLPGEVICAGGTFYTYDEKYAADSKAT 248

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
             + A++  +I ++++  A      +  R +SR DF   P   ++   EIN  PG+TP+S
Sbjct: 249 TKVVAEVSDEIAQQIRAYAVKVFDGMKLRHLSRIDFFLTP-EGEILLNEINTFPGLTPIS 307

Query: 273 IFPEMAAYAGYSFRELL 289
           +FP+M A  G  F + L
Sbjct: 308 MFPKMLANHGDDFSQYL 324


>gi|117619780|ref|YP_856919.1| D-alanyl-alanine synthetase A [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|166198471|sp|A0KKW8|DDL_AERHH RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|117561187|gb|ABK38135.1| D-alanine--D-alanine ligase [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
          Length = 329

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 91/326 (27%), Positives = 145/326 (44%), Gaps = 37/326 (11%)

Query: 3   VLMGGISSEREVSLSSGKACASALED-AGFKVSQIDV---------DRSVGLVLAHL--- 49
           +L GG  SE EVSL S       L    G +V+++++          R   L L  L   
Sbjct: 8   LLCGGGGSEHEVSLRSANFLEKQLSLLPGVEVTRVEMFADRWLSADGRECKLGLDKLLSF 67

Query: 50  ----KP-DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCG 104
               +P D     +HG  GE G +Q+ LEL  +PY      AS +  +K+ +K  +S+ G
Sbjct: 68  DSVARPVDYVVPCIHGYPGETGDLQSFLELAGLPYLGCDAEASKICFNKISTKLWLSAIG 127

Query: 105 VPVCPSILV---NRFTMDSQHLISPPY---VIKPLKGGSSLGIIVIKKDQSIPLDLLQ-- 156
           +P  P + +   N   +         +    IK    GSS+G      +     DL++  
Sbjct: 128 IPNTPYLFLTEQNDAALSEAKAALAKWGKVFIKAASQGSSVGCYSASNEA----DLVKGI 183

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGV--MGDASLDVT--EIAVPKSDFYSYELKYSSLNST 212
           + ++ + +Q+LIE+ V   EL   V   GD  +     EI VP+  FY+YE KYSS + T
Sbjct: 184 ADAFGYSEQVLIEKAVKPRELEVAVYQYGDELVATYPGEICVPQDKFYTYEEKYSSASHT 243

Query: 213 HVLPAKIPLDIYK--EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270
                   L   +   +   A  A + +    +SR DF       ++   EIN  PGMT 
Sbjct: 244 ETALRAEGLTQAQADAIHEYALKAFRQLKLTHLSRIDFFLTE-EGEILLNEINTFPGMTS 302

Query: 271 VSIFPEMAAYAGYSFRELLLWMVEDA 296
           +S+FP++  + G+ F + L  ++  A
Sbjct: 303 ISMFPKLLEHHGHRFADYLEQILRKA 328


>gi|59713753|ref|YP_206528.1| D-alanyl-alanine synthetase A [Vibrio fischeri ES114]
 gi|81310804|sp|Q5E006|DDL_VIBF1 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|59482001|gb|AAW87640.1| D-alanine-D-alanine ligase A [Vibrio fischeri ES114]
          Length = 330

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 81/326 (24%), Positives = 148/326 (45%), Gaps = 35/326 (10%)

Query: 3   VLMGGISSEREVSLSSGKACASALED-AGFKVSQIDV-DRSVGLVLAHLKPDLAFN---- 56
           +L GG  +E EVSL S K  +  L +   F+++ +++ D     + + LK +L  +    
Sbjct: 6   LLCGGGGTEHEVSLVSSKYISQQLSELDAFEITHLEIKDEGWFHIESGLKYELRSDKTLL 65

Query: 57  --------------VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS 102
                          +HG  GE G +Q++L++L IPY      +S  S +K+ SK    +
Sbjct: 66  SGETVSSPVDYVVPCIHGYPGETGDIQSMLDMLSIPYLGCDAESSTNSFNKITSKLWYDA 125

Query: 103 CGVPVCPSILVNRFTMDSQHLISPPY------VIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
            G+P  P + +     ++       +       +K    GSS+G   +  +  +   +  
Sbjct: 126 LGIPNTPYLFLTENNEETHQSALAAFKQWGGLFVKAACQGSSVGCYKVTSEAELSKAI-- 183

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKY-SSLNS 211
           + ++ +  Q+L+E+ V   EL       D  L  T   E+  P   FY+Y+ KY S  +S
Sbjct: 184 NDAFGYSQQVLVEKAVKPRELEVAAYEIDGQLFTTAPGEVTAPDGAFYTYDEKYGSGSHS 243

Query: 212 THVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270
           T  L A+ +  +  K + + +      +  + +SR DF       +++  E+N  PGMTP
Sbjct: 244 TTSLDAQNLTEEQVKLIDQYSRKVFTQMKLKDLSRIDFFLTD-DNEIYLNEVNTFPGMTP 302

Query: 271 VSIFPEMAAYAGYSFRELLLWMVEDA 296
           +S+FP++  + G  F+  L   V +A
Sbjct: 303 ISMFPKLLEHNGDCFKTFLQKAVLNA 328


>gi|624702|gb|AAA60991.1| ligase [Enterococcus casseliflavus]
          Length = 197

 Score = 86.3 bits (212), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 53/187 (28%), Positives = 99/187 (52%), Gaps = 10/187 (5%)

Query: 71  ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP---- 126
           + EL+++PY   G+  SAL M+K    Q  ++ GV   P+IL+       + + +     
Sbjct: 1   MFELMKLPYVGCGVAGSALCMNKWLLHQAAAAIGVQSAPTILLTNHANQQEQIEAFIQTH 60

Query: 127 --PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
             P   KP + GSS GI  +   + I   L    ++ +   +L+++ + G+E+ CG++G+
Sbjct: 61  GFPVFFKPNEAGSSKGITKVTCVEEIASAL--KEAFTYCSAVLLQKNIAGVEIGCGILGN 118

Query: 185 ASLDVTEI-AVPKSD-FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            SL V    A+   D F+ +E KY  +++   +PA +P  I  +V+  A L ++++G +G
Sbjct: 119 DSLTVGACDAISLVDGFFDFEEKYQLISAKITVPAPLPETIETKVKEQAQLLYRSLGLKG 178

Query: 243 ISRSDFL 249
           ++R DF 
Sbjct: 179 LARIDFF 185


>gi|51921845|gb|AAU14064.1| VanB [Enterococcus faecalis]
          Length = 244

 Score = 86.3 bits (212), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 57/185 (30%), Positives = 93/185 (50%), Gaps = 9/185 (4%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+AF VLHG  GEDG +Q + EL  IPY    I +SA  MDK  +  +  + G+ V    
Sbjct: 62  DVAFPVLHGKCGEDGAIQGLFELSGIPYVGCDIQSSAACMDKSLAYILTKNAGIAVPEFQ 121

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
           ++ +        ++ P  +KP + GSS G  V K + +  L+    ++  +  ++LIEQ 
Sbjct: 122 MIEKGDKPEARTLTYPVFVKPARSGSSFG--VTKVNSTEELNAAIEAAGQYDGKILIEQA 179

Query: 172 VDGIELTCGVMGDAS----LDVTEIAVPKSDFYSY---ELKYSSLNSTHVLPAKIPLDIY 224
           + G E+ C VMG+       +V +I +    F  +   E +  S N+  ++PA IP++  
Sbjct: 180 ISGCEVGCAVMGNEDDLIVGEVDQIRLSHGIFRIHQENEPEKGSENAMIIVPADIPVEER 239

Query: 225 KEVQR 229
             VQ 
Sbjct: 240 NRVQE 244


>gi|168699147|ref|ZP_02731424.1| D-ala D-ala ligase [Gemmata obscuriglobus UQM 2246]
          Length = 332

 Score = 86.3 bits (212), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 82/312 (26%), Positives = 146/312 (46%), Gaps = 33/312 (10%)

Query: 15  SLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG---NFGEDGLVQAI 71
           S ++ KA A  L   G  V+ +   R++   L +  PDL FN   G   +   +  V A+
Sbjct: 21  SPATVKAIADVLASLGHTVALLGDGRALIESLLNAPPDLVFNFAEGAGVSRSREARVPAV 80

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI----LVNRFTMDSQHL---- 123
            E+L +PYT S   A A+++DK  ++++  S G+ V   I    +   +  D        
Sbjct: 81  CEMLGVPYTGSDPFALAVALDKDATRRLAESYGLTVPKGITLAPVAGEYDGDFAEFAPAL 140

Query: 124 ----ISPPYVIKPLKGGSSLGI----IVIKKDQSIPLDLLQSSSW-NHGDQLLIEQYVDG 174
               ++ P + KP   GSS GI    ++    +  P  +     W N+   +L+E+Y+ G
Sbjct: 141 EDAGLTLPVIAKPTCEGSSKGIRGKCLITSAAEFGPAVV---ELWRNYQQPVLVEEYIAG 197

Query: 175 IELTCGVMGD------ASLDVTEIAVPKSDFYSYELKYSSLNST-HVLPAKIPLDIYKEV 227
            E+T G+ G         + +     P+S  YS E+K +  ++  +V PAK+P ++   +
Sbjct: 198 DEITIGLYGSDPPQPIGVMQIVPKQSPESFVYSLEVKRNWADAVDYVAPAKLPREVLHAI 257

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-IFPEMAAYAGYSFR 286
           +  A   +  +GCR ++R DF         ++LEIN  PG+ P S     +A   G ++ 
Sbjct: 258 EADAMALYAGLGCRDVARLDFRVR--DGVPYFLEINPLPGLNPDSGDLCYLAYRMGLTYP 315

Query: 287 ELLLWMVEDASC 298
           EL+  +++ A+ 
Sbjct: 316 ELIGLILDSAAA 327


>gi|7157935|gb|AAF37347.1|AF170808_1 D-alanine:D-alanine ligase [Lactococcus garvieae]
          Length = 198

 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 51/190 (26%), Positives = 97/190 (51%), Gaps = 11/190 (5%)

Query: 71  ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV------NRFTMDSQHLI 124
            LE++ + Y     L+++ +MDK+ +  V ++ GVP  P +         +   + Q  +
Sbjct: 1   FLEIMRLAYVGPKYLSASSTMDKLLANDVFTAVGVPQVPYVAAYADENQEKIHAEVQDKL 60

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
           + P  +KP   GSS+GI  +   + +   L  + ++ + ++++IEQ V+  E+ C V+G+
Sbjct: 61  TFPVFVKPANMGSSVGISKVSSLEELEAGL--AVAYKYDNRVVIEQGVNAREIECAVLGN 118

Query: 185 ASLDVTEI---AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241
                + +    V   DFY Y  KY        +PA IP ++ ++++  A  A+QA+   
Sbjct: 119 GGKVRSTLPGEVVKDVDFYDYRSKYIDNKIEMAIPADIPAEVAEKMRHYAEKAYQAMNGA 178

Query: 242 GISRSDFLFD 251
           G+SR DF +D
Sbjct: 179 GLSRCDFFYD 188


>gi|114563717|ref|YP_751230.1| D-alanyl-alanine synthetase A [Shewanella frigidimarina NCIMB 400]
 gi|122299324|sp|Q080C3|DDL_SHEFN RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|114335010|gb|ABI72392.1| D-alanine--D-alanine ligase [Shewanella frigidimarina NCIMB 400]
          Length = 336

 Score = 85.9 bits (211), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 68/251 (27%), Positives = 118/251 (47%), Gaps = 15/251 (5%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D     +HG  GE G +Q+   L+++PY      AS+   +K+ +K   S+ GVP  P I
Sbjct: 79  DYVIPCIHGFPGETGDIQSYFNLIQLPYFGCESEASSNCFNKITAKMWFSALGVPNTPYI 138

Query: 112 LVNRFTMDSQHLISPPY------VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
            +++   D+       +       +K    GSS+G    K D    +  +   ++++   
Sbjct: 139 FLHQLDDDAIKQTETAFDNWGSVFVKAASQGSSVG--CYKVDVKANIANVLKDAFSYAPY 196

Query: 166 LLIEQYVDGIELTCGVMGDASLDVT----EIAVPKSDFYSYELKY--SSLNSTHVLPAKI 219
           +++EQ +   EL   V       V     EI    + FYS++ KY  +S   T V+   +
Sbjct: 197 VVVEQTIHARELEVAVYQYQGEVVATLPGEIICDSNTFYSFDEKYATNSKARTDVVADNL 256

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279
             +I + ++  A  A + +  R +SR DF F     ++   EIN  PG+TP+S+FP+M  
Sbjct: 257 SPEISQLIRDYAVKAFKGMKLRHLSRIDF-FLTADNQILLNEINTFPGLTPISMFPKMLQ 315

Query: 280 YAGYSFRELLL 290
             G++F E L+
Sbjct: 316 NHGHNFTEYLI 326


>gi|7157929|gb|AAF37344.1|AF170805_1 D-alanine:D-alanine ligase [Enterococcus malodoratus]
          Length = 200

 Score = 85.9 bits (211), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 54/192 (28%), Positives = 98/192 (51%), Gaps = 15/192 (7%)

Query: 71  ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--SILVNRFTMDSQHLISP-- 126
            LE L++P   +G++ SA +MDK+ +K ++ + G+P  P   +L N++  + + +     
Sbjct: 1   FLETLDMPDVGAGVVTSACAMDKIMTKYILQAAGIPQVPYVPVLKNQWKENPKQIFDKCE 60

Query: 127 -----PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
                P  IKP   GSS+GI   +  + +   L    ++ +  + L+EQ +D  E+   V
Sbjct: 61  GTLLYPMFIKPANMGSSVGISRAENREELQNAL--QEAYRYDSRALVEQGIDAREIEVAV 118

Query: 182 MGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           +G+  +  T   E+ V +  FY Y  KY        +PA+IP ++ ++ +  A LA+  +
Sbjct: 119 LGNDDVRTTLPGEV-VKEVAFYDYNAKYIDNTIQMAIPAEIPEEVMQKARDYAKLAYTML 177

Query: 239 GCRGISRSDFLF 250
           G  G+SR DF  
Sbjct: 178 GGSGLSRCDFFL 189


>gi|167623784|ref|YP_001674078.1| D-alanyl-alanine synthetase A [Shewanella halifaxensis HAW-EB4]
 gi|189083051|sp|B0TRK1|DDL_SHEHH RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|167353806|gb|ABZ76419.1| D-alanine--D-alanine ligase [Shewanella halifaxensis HAW-EB4]
          Length = 333

 Score = 85.9 bits (211), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 64/243 (26%), Positives = 114/243 (46%), Gaps = 14/243 (5%)

Query: 58  LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117
           +HG  GE G +Q+  EL+ +PY      AS+   +K+ +K   S+ G+   P I +N F 
Sbjct: 85  IHGYPGETGDIQSYFELINLPYFGCDSEASSNCFNKVTAKMWFSALGIRNTPYIFLNEFN 144

Query: 118 M----DSQHLISP--PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                +++  +       IK    GSS+G   +   + +   L    ++ +   +++E+ 
Sbjct: 145 QQAIEETERALEKWGSIFIKAASQGSSVGCYRVDNKEQLANSL--EEAFKYSPYVVVEKT 202

Query: 172 VDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKE 226
           ++  EL       D  +  T   EI    + FYS++ KY+  +    V+ A +   I K+
Sbjct: 203 INARELEVAAYEVDGEIIATKPGEIICASNTFYSFDEKYAENSQAQTVIEADVDEVIAKQ 262

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           +Q  A  A + +  R +SR DF       ++   EIN  PG T +S+FP+M    G++F 
Sbjct: 263 IQEYAIKAFKGMKLRHLSRIDFFLTD-ENEILLNEINTFPGQTQISMFPKMLQNHGHNFA 321

Query: 287 ELL 289
           + L
Sbjct: 322 QYL 324


>gi|1814248|gb|AAB41854.1| D-Alanine:D-Alanine ligase [Streptococcus mutans]
          Length = 198

 Score = 85.5 bits (210), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 62/190 (32%), Positives = 101/190 (53%), Gaps = 15/190 (7%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVV-SSCGVPVCPSI-------LVNRFTMDSQHL 123
           LE+L++PY  + IL+S+++MDK+ +KQV+ S+  +P    +       L ++     + L
Sbjct: 2   LEVLKMPYVGTNILSSSVAMDKITTKQVLESATTIPQVAYVALIEGEPLESKLAEVEEKL 61

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I P +V KP   GSS+GI   K +    L    + +  +  ++LIEQ VD  E+  G++G
Sbjct: 62  IYPVFV-KPANMGSSVGIS--KAENRTDLKQAIALALKYDSRVLIEQGVDAREIEVGILG 118

Query: 184 DASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           +  +  T   EI V    FY YE KY     T  +PA+I   I ++++     A + +GC
Sbjct: 119 NTDVKTTLPGEI-VKVVAFYDYEAKYIDNKITMAIPAEIDPVIVEKMRDYRATAFRTLGC 177

Query: 241 RGISRSDFLF 250
            G+SR DF  
Sbjct: 178 CGLSRCDFFL 187


>gi|157962243|ref|YP_001502277.1| D-alanyl-alanine synthetase A [Shewanella pealeana ATCC 700345]
 gi|189083053|sp|A8H5A5|DDL_SHEPA RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|157847243|gb|ABV87742.1| D-alanine--D-alanine ligase [Shewanella pealeana ATCC 700345]
          Length = 334

 Score = 85.5 bits (210), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 66/249 (26%), Positives = 114/249 (45%), Gaps = 14/249 (5%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D     +HG  GE G +Q+  EL+ +PY      +S+   +K+ +K   S+ G+P  P I
Sbjct: 79  DYVIPCIHGYPGETGDIQSYFELINLPYFGCDSESSSNCFNKVTAKMWFSALGIPNTPYI 138

Query: 112 LVNRFTMDSQHLISPPYV------IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
            ++ F   S               IK    GSS+G   +   + +   L ++ +++    
Sbjct: 139 FLSEFNQQSLEQAEAALAKWGSIFIKAASQGSSVGCYRVDSIEQLASSLEEAFTFS--PY 196

Query: 166 LLIEQYVDGIELTCGVM-GDASLDVT---EIAVPKSDFYSYELKYSSLNSTH-VLPAKIP 220
           ++IE+ +   EL       D  +  T   EI    + FYS++ KY+  +    V+ A + 
Sbjct: 197 VVIEKTITARELEVAAYEADGEIIATKPGEIICASNTFYSFDEKYAENSQAQTVIEADVD 256

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280
             I K++Q  A  A + +  R +SR DF       ++   EIN  PG T +S+FP+M   
Sbjct: 257 EAIAKQIQEYAIKAFKGMKLRHLSRIDFFLTE-DNEILLNEINTFPGQTQISMFPKMLQN 315

Query: 281 AGYSFRELL 289
            G++F + L
Sbjct: 316 HGHNFAQYL 324


>gi|282853024|ref|ZP_06262361.1| D-ala D-ala ligase N-terminal domain protein [Propionibacterium
           acnes J139]
 gi|282582477|gb|EFB87857.1| D-ala D-ala ligase N-terminal domain protein [Propionibacterium
           acnes J139]
 gi|314922657|gb|EFS86488.1| D-ala D-ala ligase [Propionibacterium acnes HL001PA1]
 gi|314965740|gb|EFT09839.1| D-ala D-ala ligase [Propionibacterium acnes HL082PA2]
 gi|314982882|gb|EFT26974.1| D-ala D-ala ligase [Propionibacterium acnes HL110PA3]
 gi|315091191|gb|EFT63167.1| D-ala D-ala ligase [Propionibacterium acnes HL110PA4]
 gi|315094422|gb|EFT66398.1| D-ala D-ala ligase [Propionibacterium acnes HL060PA1]
 gi|327328918|gb|EGE70678.1| D-alanine--D-alanine ligase B [Propionibacterium acnes HL103PA1]
          Length = 197

 Score = 85.5 bits (210), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 55/183 (30%), Positives = 100/183 (54%), Gaps = 14/183 (7%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62
           VL GG+S +R++SL SG+  A AL   G +V + D+D ++   L      + F +LHG  
Sbjct: 7   VLAGGLSHQRDISLKSGRTVAQALRRVGHEVVEADIDSALIETLRANDGAVVFPMLHGGL 66

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFT-M 118
           GE+G +  +L+L++IPY  S      +S DK  + + V++ GV V P  +    N F  +
Sbjct: 67  GENGALLEVLQLMDIPYVGSSPATCRISFDKSIASRAVAAAGV-VTPQQVALPHNVFREL 125

Query: 119 DSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
            +Q ++         P ++KP  GGSSLG+  +     +P  +  ++++ + D +++E++
Sbjct: 126 GAQMVMRSIAEKFGLPVIVKPAHGGSSLGVTKVDGVDDLPQAV--ANAYAYDDMVVVEEF 183

Query: 172 VDG 174
           + G
Sbjct: 184 IVG 186


>gi|163750869|ref|ZP_02158103.1| D-alanylalanine synthetase [Shewanella benthica KT99]
 gi|161329427|gb|EDQ00422.1| D-alanylalanine synthetase [Shewanella benthica KT99]
          Length = 336

 Score = 85.5 bits (210), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 71/250 (28%), Positives = 118/250 (47%), Gaps = 16/250 (6%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D     +HG  GE G +Q+  EL+ +PY      AS    +K+ +K   S+ G+P  P I
Sbjct: 79  DYVIPCIHGYPGETGDIQSYFELINLPYFGCDSEASRNCFNKITAKMWFSALGIPNTPYI 138

Query: 112 LVNRFTMDS-----QHLISPPYV-IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
            +N F  D+     Q L S   + IK    GSS+G   +   + +   L Q  ++ +   
Sbjct: 139 FLNDFNDDAINQAQQALASWGSIFIKAASQGSSVGCYRVDSQEELTEYLQQ--AFTYSPY 196

Query: 166 LLIEQYVDGIELTCGVM-GDASLDVT---EIAVPKSDFYSYELKY--SSLNSTHVLPAKI 219
           +++E+ ++  EL   V   D  +  T   EI    + FYS++ KY  +S   T V+ A I
Sbjct: 197 VIVEKTIEARELEVAVYEKDGEIIATQPGEIICATNTFYSFDEKYAENSQAETKVV-ADI 255

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279
              +   ++  A    + +    +SR DF     + ++   EIN  PG+TP+S+FP+M  
Sbjct: 256 SESVSLRIREYAVKVFKGMKLSHLSRIDFFLTE-NNEILLNEINTFPGLTPISMFPKMLQ 314

Query: 280 YAGYSFRELL 289
           + G  F + L
Sbjct: 315 HHGDDFSDYL 324


>gi|326330649|ref|ZP_08196953.1| putative D-alanine--D-alanine ligase [Nocardioidaceae bacterium
           Broad-1]
 gi|325951490|gb|EGD43526.1| putative D-alanine--D-alanine ligase [Nocardioidaceae bacterium
           Broad-1]
          Length = 371

 Score = 85.5 bits (210), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 69/233 (29%), Positives = 110/233 (47%), Gaps = 13/233 (5%)

Query: 55  FNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
            +  HG  GE G +Q + EL  +  T +   ++AL MDK+    V+ + G+P     L++
Sbjct: 102 LSAFHGGAGEAGGIQWLFELAGLKATGATPASAALGMDKLAFGAVMLNAGLPSLQRELLS 161

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
           R+   S      PY++KP  GGSS+GI V+  D    L LL +S       ++     D 
Sbjct: 162 RYAAPS---FEGPYIVKPRFGGSSIGIEVV-DDYETGLALLNTSPHLRAGAVVEPYRPDL 217

Query: 175 IELTCGVMGDASLDVTEIAVP-KSD---FYSYELKYSSLN----STHVLPAKIPLDIYKE 226
            +L   V     + V+++  P +SD    Y Y  KY   +    S    PA++   + K+
Sbjct: 218 FDLNASVRTAPEIAVSDVERPLRSDEAKMYDYSAKYVHTDGLSSSPREFPAQVEESVTKQ 277

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279
           ++ LA    +  G  GI R DFL D    +VF  E+N  PG   + ++P+  A
Sbjct: 278 IKDLAVRVVELTGLTGILRIDFLSDGKG-EVFINEVNSIPGALSLYLWPDTPA 329


>gi|325972391|ref|YP_004248582.1| D-alanine--D-alanine ligase [Spirochaeta sp. Buddy]
 gi|324027629|gb|ADY14388.1| D-alanine--D-alanine ligase [Spirochaeta sp. Buddy]
          Length = 325

 Score = 85.5 bits (210), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 83/292 (28%), Positives = 136/292 (46%), Gaps = 22/292 (7%)

Query: 21  ACASALEDAGFKVSQI-DVDRSVGLVLAHLKPDLAFNVLHGNFG--EDGLVQAILELLEI 77
           A  +AL+  G +  +I +V   VG +    + DL FN+  G FG   + ++ A+L+  +I
Sbjct: 34  AIDAALQKLGHQTVRIGNVKALVGYLGEGKRCDLVFNIAEGLFGLLRESVIPALLDAYQI 93

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPY--VIKPLKG 135
           PY  S     A+ + K  +K+VV   GV      +++  + D    +S PY   +KP+ G
Sbjct: 94  PYVFSDSFVLAICLHKGFTKEVVRKAGVATADFCVLS--SSDDWKQVSLPYPLFLKPVAG 151

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSS---WNHGDQLLIEQYVDGIELTCGVMGDA----SLD 188
           G+ +GI    K  + P DL + S      +   +L+E Y+ G E T G+ G      S  
Sbjct: 152 GTGIGITASSKVTN-PKDLQKVSGAMLAAYQQPVLVETYLGGREFTVGITGTGDEAQSTG 210

Query: 189 VTEIAVPKSD---FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
           V EI +  S     YSY+ K     +T     +     +K  + +A  A +A+GCR   R
Sbjct: 211 VMEIIIDHSSDGGIYSYKTKQEYETTTRY--ERPDESAWKASEAVALAAWRALGCRDGGR 268

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPV-SIFPEMAAYAGYSFRELLLWMVEDA 296
            D   D     V +LE+N   G+ P+ S  P ++   G  + EL+  ++  A
Sbjct: 269 IDVKMDE-KGVVHFLEVNPLAGLHPIDSDLPILSRMHGLGYDELIARIMHSA 319


>gi|153810104|ref|ZP_01962772.1| hypothetical protein RUMOBE_00485 [Ruminococcus obeum ATCC 29174]
 gi|149834282|gb|EDM89362.1| hypothetical protein RUMOBE_00485 [Ruminococcus obeum ATCC 29174]
          Length = 226

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 68/223 (30%), Positives = 116/223 (52%), Gaps = 11/223 (4%)

Query: 77  IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFTMDSQHLISPPYVIKPL 133
           IPYT +G L+SA++MDK  +K +    GVP      +   +R     +  +  P V+K  
Sbjct: 3   IPYTGTGYLSSAMAMDKGVTKAMFQMRGVPTPAGKAMKKKDRVETPQELGMDFPVVVKTC 62

Query: 134 KGGSSLGIIVI--KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
            GGSS+G+ ++  ++D +  LD     ++ + +++++E++V+G+E T  V+   +  V +
Sbjct: 63  CGGSSIGVYIVDNQEDYTKALD----GAFTYENEVVVEEFVEGVEYTVAVVDGKAYPVVQ 118

Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
           I VP   FY YE KY         PA I  ++ K +Q  A   + A+     +R DF+  
Sbjct: 119 I-VPVQGFYDYENKYKPGAVKETCPAPISEELTKRLQEAAVDGYHALEMESYARLDFIVT 177

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
               K++ LE N  PGMTP S+ P+ AA  G  +  L   +++
Sbjct: 178 K-DEKIYCLEANTLPGMTPTSLIPQEAAVLGMDYPTLCEELIK 219


>gi|313619832|gb|EFR91421.1| D-alanine--D-alanine ligase [Listeria innocua FSL S4-378]
          Length = 274

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 53/180 (29%), Positives = 92/180 (51%), Gaps = 22/180 (12%)

Query: 53  LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
           + F +LHG  GEDG VQ + E+L IPY  +G+LAS+ +MDK+  K++ +  G+P  P++ 
Sbjct: 100 VVFPLLHGPNGEDGTVQGLFEVLNIPYVGNGVLASSAAMDKIVMKKIFADAGIPQVPAVA 159

Query: 113 V---------NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
           V              + + +++ P  +KP   GSS+GI   K      L    + ++ + 
Sbjct: 160 VRLIDWKNYQEEMITEMEEVLTYPVFVKPANLGSSVGI--SKATNKTELIEAMTEAFLYD 217

Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK--------SDFYSYELKYSSLNSTHVL 215
            ++++EQ V   E+  GV+G+   D    +VP         + FY Y+ KY   N+  ++
Sbjct: 218 RRVVVEQGVVAREIEMGVLGN---DTPVCSVPGEILPEGAVAKFYDYKAKYQDNNTALII 274


>gi|218508112|ref|ZP_03505990.1| D-alanine-D-alanine ligase protein [Rhizobium etli Brasil 5]
          Length = 184

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 57/178 (32%), Positives = 99/178 (55%), Gaps = 16/178 (8%)

Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186
           P  IKP + GSS+G+  +   Q     L ++  + H   LL E++V G E+   V+ DA+
Sbjct: 3   PLFIKPARQGSSVGVAKVHASQEFAPALAEA--FRHDHTLLAEEFVAGREIEFSVLEDAA 60

Query: 187 LDV-----TEIAVPKSD--FYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAI 238
            D+      EI VP  +  FY+Y+ KY   N   + +PA++P ++   ++ +A  A +A+
Sbjct: 61  GDLFVSRPGEI-VPAENHGFYNYDAKYVDENGAALKVPAELPPNVEAAMRDMAAKAFRAV 119

Query: 239 GCRGISRSDFLFDPLSRKVFWL--EINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           GC G++R DF    L+  + +L  EIN  PG T +S++ +  A +G S+ E++  +V+
Sbjct: 120 GCDGMARVDFF---LTSDMRFLINEINTIPGFTDISMYSKAMAASGVSYAEVIDRLVD 174


>gi|229091614|ref|ZP_04222819.1| D-alanine--D-alanine ligase [Bacillus cereus Rock3-42]
 gi|228691763|gb|EEL45513.1| D-alanine--D-alanine ligase [Bacillus cereus Rock3-42]
          Length = 219

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 61/222 (27%), Positives = 115/222 (51%), Gaps = 13/222 (5%)

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNR---FTMDSQHLISPPYVIKPLKGGSSLG 140
           +L+S + MDK  SK+++   G+     I + +     +D    +  P V+KP  GGSS+G
Sbjct: 1   MLSSGICMDKNISKKILRYEGIETPDWIELTKMEDLNLDELDKLGFPLVVKPNSGGSSVG 60

Query: 141 I-IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDF 199
           + IV  KD+ I + L     W+   +++IE+Y+ G E+TC +     L +  I    ++F
Sbjct: 61  VKIVYDKDELISM-LETVFEWDS--EVVIEKYIKGDEITCSIFDGKQLPIISIR-HAAEF 116

Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF-DPLSRKVF 258
           + Y  KY    +   +  ++P ++ + V + +   ++A+ C   +R D +  D +    +
Sbjct: 117 FDYNAKYDDAGTIEEV-IELPAELKERVNKASLACYKALKCSVYARVDMMVKDGIP---Y 172

Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
            +E+N  PGMT  S+ P+ A  AG  + +LL  ++E +  +R
Sbjct: 173 VMEVNTLPGMTQASLLPKSADAAGIHYSKLLDMIIETSLRVR 214


>gi|218462035|ref|ZP_03502126.1| putative D-alanine--D-alanine ligase A [Rhizobium etli Kim 5]
          Length = 268

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 54/165 (32%), Positives = 89/165 (53%), Gaps = 12/165 (7%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+ F VLHG  GEDG VQ + ++  +P    GIL SA ++DK  +K+++ + G+PV  ++
Sbjct: 98  DMLFPVLHGLHGEDGSVQGVAQVARVPLAGCGILGSAAALDKEIAKRLLRAAGLPVARAV 157

Query: 112 LVNRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL 167
            ++  T  S    +  +  P  IKP + GSS+G+  +   Q     L +  ++ H   LL
Sbjct: 158 TIHEGTSPSLAALEGELGLPLFIKPARQGSSVGVAKVHASQEFAGALAE--AFRHDRTLL 215

Query: 168 IEQYVDGIELTCGVMGDASLDV-----TEIAVPKS-DFYSYELKY 206
            E+++ G E+   V+ DA+  +      EI   +S  FYSY+ KY
Sbjct: 216 AEEFIVGREIEFSVLEDAAGKLFVSRPGEIVPAESHGFYSYDAKY 260


>gi|300088095|ref|YP_003758617.1| D-alanine--D-alanine ligase [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
 gi|299527828|gb|ADJ26296.1| D-alanine--D-alanine ligase [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
          Length = 336

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 71/260 (27%), Positives = 123/260 (47%), Gaps = 27/260 (10%)

Query: 52  DLAFNVLHGN---FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
           D  FN+  G       +  + A+LE+L IPY+ +     ++++DK  +K++    GV   
Sbjct: 66  DFVFNIAEGRGTGRAREAQIPAVLEMLGIPYSGADPQTLSMALDKPLTKRLADFAGVSTP 125

Query: 109 PSILVNRFTMDSQHL-------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW- 160
             +++N    D+ +L       +  P  IKP   GSS GI +     S       +    
Sbjct: 126 AWLVLN----DTANLAVADWASLHFPVFIKPAFEGSSKGIRLNSLAASPAAAAAVAGRLL 181

Query: 161 -NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP------KSD---FYSYELKYSSLN 210
            ++   +L+E+++DG E+TCG++G+       + +P      ++D    YS E+K    N
Sbjct: 182 GDYRQPVLVEEFIDGDEITCGLIGNTGQADNPMVLPLGILPHRADGPFIYSLEVKRDYRN 241

Query: 211 ST-HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
              +  PA++P  + +E+ R A      + CR  +R+DF  D   R  F LEIN  PG++
Sbjct: 242 RVEYQFPARLPAPVLEELTRQAVRVFDTLNCRDFARADFRIDRRGRPWF-LEINPLPGLS 300

Query: 270 PVSIFPEMAAYAGYSFRELL 289
             S    +A   G+S  EL+
Sbjct: 301 LDSDLYIIARGLGWSHAELI 320


>gi|881495|gb|AAA68950.1| unknown [Thermotoga maritima MSB8]
          Length = 128

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 45/95 (47%), Positives = 60/95 (63%), Gaps = 1/95 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP-DLAFNVLH 59
           +A+LMGG+S ERE+SL SG+    ALE  G++ +  DV       +  LK  D+ FNVLH
Sbjct: 13  VALLMGGVSREREISLRSGERVKKALEKLGYEHTVFDVREDFLKKVDQLKSFDVVFNVLH 72

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKM 94
           G FGEDG +QAIL+ L I YT S   +S +  DK+
Sbjct: 73  GTFGEDGTLQAILDFLGIRYTGSDAFSSMICFDKL 107


>gi|1814246|gb|AAB41853.1| D-Alanine:D-Alanine ligase [Streptococcus mitis]
          Length = 197

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 99/188 (52%), Gaps = 12/188 (6%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV------NRFTMDSQHLIS 125
           LE+L++PY    IL+S+L+MDK+ +K+V+ S G+   P + +           + +  ++
Sbjct: 2   LEVLKMPYVGCNILSSSLAMDKITTKRVLESVGIAQVPYVAIVEGDDMTAKIAEVEEKLT 61

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            P   KP   GSS+GI   K +    L      ++ +  ++L+EQ V+  E+  G++G+ 
Sbjct: 62  YPVFTKPSNMGSSVGI--SKSENQEELRQALKLAFQYDSRVLVEQGVNAREIEVGLLGNY 119

Query: 186 SLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            +  T   E+ V    FY Y+ KY     T  +PAKI  D+   +++ A  A +AIG  G
Sbjct: 120 DVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAIGGLG 178

Query: 243 ISRSDFLF 250
           +SR DF +
Sbjct: 179 LSRCDFFY 186


>gi|76789504|ref|YP_328590.1| D-alanine--D-alanine ligase [Chlamydia trachomatis A/HAR-13]
 gi|237803192|ref|YP_002888386.1| bifunctional D-alanyl-alanine synthetase
           A/UDP-N-acetylmuramate--L-alanine ligase [Chlamydia
           trachomatis B/Jali20/OT]
 gi|237805113|ref|YP_002889267.1| bifunctional D-alanyl-alanine synthetase
           A/UDP-N-acetylmuramate--L-alanine ligase [Chlamydia
           trachomatis B/TZ1A828/OT]
 gi|76168034|gb|AAX51042.1| UDP-N-acetylmuramate--alanine ligase [Chlamydia trachomatis
           A/HAR-13]
 gi|231273413|emb|CAX10328.1| UDP-N-acetylmuramate--alanine ligase [Chlamydia trachomatis
           B/TZ1A828/OT]
 gi|231274426|emb|CAX11221.1| UDP-N-acetylmuramate--alanine ligase [Chlamydia trachomatis
           B/Jali20/OT]
 gi|296436311|gb|ADH18485.1| bifunctional D-alanyl-alanine synthetase
           A/UDP-N-acetylmuramate--L-alanine ligase [Chlamydia
           trachomatis G/9768]
 gi|296438170|gb|ADH20331.1| bifunctional D-alanyl-alanine synthetase
           A/UDP-N-acetylmuramate--L-alanine ligase [Chlamydia
           trachomatis G/11074]
 gi|297140671|gb|ADH97429.1| bifunctional D-alanyl-alanine synthetase
           A/UDP-N-acetylmuramate--L-alanine ligase [Chlamydia
           trachomatis G/9301]
          Length = 803

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 89/338 (26%), Positives = 146/338 (43%), Gaps = 49/338 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44
           + ++ GG S E E+S+ S K  A  L  + + VS   + R  GL                
Sbjct: 450 LGIICGGKSCEHEISVLSAKNIAKHLSKSFYDVSYFLITRE-GLWESVSSLETAEDSGKS 508

Query: 45  -----VLAHL-KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQ 98
                +   L K D+   +LHG +GEDG +Q  LE +  PYT   I  SA++M+K+ +K+
Sbjct: 509 VFDPEIAQRLEKVDVVLPILHGPYGEDGAMQGFLETIGKPYTGPAIAFSAIAMNKVFTKR 568

Query: 99  VVSSCGVPVCPSILVNRFTMDSQ------HLI---SPPYVIKPLKGGSSLGIIVIKKDQS 149
            +S  G+PV P + +       +      H++   S P  +K    GSS+G+  +     
Sbjct: 569 FMSDLGIPVVPYLPLTLAGWKQEQDKWLAHIVEAFSFPMFVKSSHLGSSIGVFEVHNVIE 628

Query: 150 IPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK----SDFYSYELK 205
           +  D +  +     D  + E  +   E+   V+GD S       + +      F  Y+ K
Sbjct: 629 LR-DAINEAFMRDNDVFVEENRLGCKEIEVSVLGDGSGAFVVAGLHERRGSGGFIDYQEK 687

Query: 206 Y--SSLNSTHVLPAKIPLDIYKEVQRLAFLA----HQAIGCRGISRSDFLFDPLSRKVFW 259
           Y  S  +S  ++      D+ KE+Q     A    ++ +  +G  R DF  D      FW
Sbjct: 688 YGLSGKSSAQIV---FDTDLSKEIQEQILEAADKIYRLLLGKGSCRIDFFVDEEGN--FW 742

Query: 260 L-EINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           L E+N  PGMT  S F       G+S+ +++  +V D 
Sbjct: 743 LSEMNPIPGMTETSPFLTSFIRKGWSYEQIVHQLVIDG 780


>gi|27383340|ref|NP_774869.1| hypothetical protein bll8229 [Bradyrhizobium japonicum USDA 110]
 gi|27356515|dbj|BAC53494.1| bll8229 [Bradyrhizobium japonicum USDA 110]
          Length = 348

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 67/251 (26%), Positives = 120/251 (47%), Gaps = 22/251 (8%)

Query: 53  LAFNVLHGNFGEDGL--VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
           + FN+ +G  GE     V A+LE+  +PYT S  L  AL++DK  +KQ++  CGVP  P+
Sbjct: 73  IVFNMAYGIQGECRYTHVPAMLEMAGVPYTGSSPLGHALALDKAITKQLIRDCGVPT-PN 131

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS---WNHGDQLL 167
             V R   +S   +  P V+KP    +S G+ ++ +    P  L Q+       +    L
Sbjct: 132 FRVMRRGTESTGDLCFPLVVKPRHESTSFGLQLVYE----PAQLRQAVEVIVTQYAQDAL 187

Query: 168 IEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK---------YSSLNSTHVLPAK 218
           +E+Y++G E+   ++G+  L+   + + + DF   E +          + +    + PA+
Sbjct: 188 VEEYIEGREICVALLGNGELEA--LPLVEQDFGERETRLITWEDKMHMAVVEPQKICPAQ 245

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278
           +  ++   ++ ++    +A  CR  +R D   D  S   F LEIN    +   + +   A
Sbjct: 246 VGSNLATILRDISVATFRACRCRDYARVDIRID-RSGHPFVLEINSMAALGIGASYVLAA 304

Query: 279 AYAGYSFRELL 289
             AGY+F  L+
Sbjct: 305 KAAGYTFSSLV 315


>gi|7157925|gb|AAF37342.1|AF170803_1 D-alanine:D-alanine ligase [Enterococcus columbae]
          Length = 199

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 57/192 (29%), Positives = 95/192 (49%), Gaps = 16/192 (8%)

Query: 71  ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--SILVNRFTMDSQHLISP-- 126
            LE L++PY  +G+LASA  MDK+ +K V+ + G+P  P   +L  ++    Q +     
Sbjct: 1   FLETLKMPYVGTGVLASACGMDKIMTKYVLQAGGIPQVPYMPVLYTQWKEQPQQIFEQCE 60

Query: 127 -----PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
                P  +KP   GSS+GI   +  + +   L       +  +++IEQ ++  E+   V
Sbjct: 61  GSLLYPMFVKPANMGSSVGISKAENREELDNAL---KELLYDTRVIIEQGIEAREIEVAV 117

Query: 182 MGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           +G+  +  T   EI V    FY Y  KY     T  +PA++P ++ ++ Q  A  A+  +
Sbjct: 118 LGNEDVRTTVAGEI-VKDVAFYDYNSKYIDNKITMQIPAEVPQEVQEKAQEYAKKAYTML 176

Query: 239 GCRGISRSDFLF 250
           G  G+SR DF  
Sbjct: 177 GGSGLSRCDFFL 188


>gi|1814250|gb|AAB41855.1| D-Alanine:D-Alanine ligase [Streptococcus oralis]
          Length = 197

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 59/188 (31%), Positives = 98/188 (52%), Gaps = 12/188 (6%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLIS 125
           LE+L++PY    IL+S+L+MDK+ +K+V+ S G+   P +       V     + +  ++
Sbjct: 2   LEVLKMPYVGCNILSSSLAMDKITTKRVLESVGIAQVPYVAIVEGDDVTAKIAEVEEKLT 61

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            P   KP   GSS+GI   K +    L      ++ +  ++L+EQ V+  E+  G++G+ 
Sbjct: 62  YPVFTKPSNMGSSVGI--SKSENQEELRQALELAFQYDSRVLVEQGVNAREIEVGLLGNY 119

Query: 186 SLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            +  T   E+ V    FY Y+ KY     T  +PAKI  D+   ++  A  A +AIG  G
Sbjct: 120 DVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRHNAETAFRAIGGLG 178

Query: 243 ISRSDFLF 250
           +SR DF +
Sbjct: 179 LSRCDFFY 186


>gi|255507376|ref|ZP_05383015.1| UDP-N-acetylmuramate--alanine ligase [Chlamydia trachomatis
           D(s)2923]
 gi|289525806|emb|CBJ15287.1| UDP-N-acetylmuramate--alanine ligase [Chlamydia trachomatis
           Sweden2]
 gi|296435384|gb|ADH17562.1| bifunctional D-alanyl-alanine synthetase
           A/UDP-N-acetylmuramate--L-alanine ligase [Chlamydia
           trachomatis E/150]
 gi|296439101|gb|ADH21254.1| bifunctional D-alanyl-alanine synthetase
           A/UDP-N-acetylmuramate--L-alanine ligase [Chlamydia
           trachomatis E/11023]
          Length = 803

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 88/338 (26%), Positives = 146/338 (43%), Gaps = 49/338 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44
           + ++ GG S E E+S+ S K  A  L  + + VS   + R  GL                
Sbjct: 450 LGIICGGKSCEHEISVLSAKNIAKHLSKSFYDVSYFLITRE-GLWESVSSLETAEDSGKS 508

Query: 45  -----VLAHL-KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQ 98
                +   L K D+   +LHG +GEDG +Q  LE +  PYT   I  SA++M+K+ +K+
Sbjct: 509 VFDPEIAQRLEKVDVVLPILHGPYGEDGAMQGFLETIGKPYTGPAIAFSAIAMNKVFTKR 568

Query: 99  VVSSCGVPVCPSILVNRFTMDSQ------HLI---SPPYVIKPLKGGSSLGIIVIKKDQS 149
            +S  G+PV P + +       +      H++   S P  +K    GSS+G+  +     
Sbjct: 569 FMSDLGIPVVPYLPLTLAGWKQEQDKWLAHIVEAFSFPMFVKSSHLGSSIGVFEVHNVIE 628

Query: 150 IPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK----SDFYSYELK 205
           +  D +  +     D  + E  +   E+   V+GD S       + +      F  Y+ K
Sbjct: 629 LR-DAINEAFMRDNDVFVEENRLGCKEIEVSVLGDGSGAFVVAGLHERRGSGGFIDYQAK 687

Query: 206 Y--SSLNSTHVLPAKIPLDIYKEVQRLAFLA----HQAIGCRGISRSDFLFDPLSRKVFW 259
           Y  S  +S  ++      D+ KE+Q     A    ++ +  +G  R DF  D      FW
Sbjct: 688 YGLSGKSSAQIV---FDTDLSKEIQEQILEAADKIYRLLLGKGSCRIDFFVDEEGN--FW 742

Query: 260 L-EINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           L E+N  PGMT  S F       G+S+ +++  ++ D 
Sbjct: 743 LSEMNPIPGMTETSPFLTSFIRKGWSYEQIVHQLIIDG 780


>gi|15605495|ref|NP_220281.1| bifunctional D-alanyl-alanine synthetase
           A/UDP-N-acetylmuramate--L-alanine ligase [Chlamydia
           trachomatis D/UW-3/CX]
 gi|6919928|sp|O84767|MUDD_CHLTR RecName: Full=Bifunctional enzyme MurC/Ddl; Includes: RecName:
           Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase;
           Includes: RecName: Full=D-alanine--D-alanine ligase;
           AltName: Full=D-Ala-D-Ala ligase; AltName:
           Full=D-alanylalanine synthetase
 gi|3329224|gb|AAC68357.1| UDP-N-acetylmuramate-alanine ligase/D-Ala-D-Ala Ligase [Chlamydia
           trachomatis D/UW-3/CX]
          Length = 803

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 89/338 (26%), Positives = 146/338 (43%), Gaps = 49/338 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44
           + ++ GG S E E+S+ S K  A  L  + + VS   + R  GL                
Sbjct: 450 LGIICGGKSCEHEISVLSAKNIAKHLSKSFYDVSYFLITRE-GLWESVSSLETAEDSGKS 508

Query: 45  -----VLAHL-KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQ 98
                +   L K D+   +LHG +GEDG +Q  LE +  PYT   I  SA++M+K+ +K+
Sbjct: 509 VFDPEIAQRLEKVDVVLPILHGPYGEDGAMQGFLETIGKPYTGPAIAFSAIAMNKVFTKR 568

Query: 99  VVSSCGVPVCPSILVNRFTMDSQ------HLI---SPPYVIKPLKGGSSLGIIVIKKDQS 149
            +S  G+PV P + +       +      H++   S P  +K    GSS+G+  +     
Sbjct: 569 FMSDLGIPVVPYLPLTLAGWKQEQDKWLAHIVEAFSFPIFVKSSHLGSSIGVFEVHNVIE 628

Query: 150 IPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK----SDFYSYELK 205
           +  D +  +     D  + E  +   E+   V+GD S       + +      F  Y+ K
Sbjct: 629 LR-DAINEAFMRDNDVFVEENRLGCKEIEVSVLGDGSGAFVVAGLHERRGSGGFIDYQEK 687

Query: 206 Y--SSLNSTHVLPAKIPLDIYKEVQRLAFLA----HQAIGCRGISRSDFLFDPLSRKVFW 259
           Y  S  +S  ++      D+ KE+Q     A    ++ +  +G  R DF  D      FW
Sbjct: 688 YGLSGKSSAQIV---FDTDLSKEIQEQILEAADKIYRLLLGKGSCRIDFFVDEEGN--FW 742

Query: 260 L-EINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           L E+N  PGMT  S F       G+S+ +++  +V D 
Sbjct: 743 LSEMNPIPGMTETSPFLTSFIRKGWSYEQIVHQLVIDG 780


>gi|255311596|ref|ZP_05354166.1| UDP-N-acetylmuramate-alanine ligase and D-Ala-D-Ala ligase
           [Chlamydia trachomatis 6276]
 gi|255317897|ref|ZP_05359143.1| UDP-N-acetylmuramate-alanine ligase and D-Ala-D-Ala ligase
           [Chlamydia trachomatis 6276s]
 gi|296437240|gb|ADH19410.1| bifunctional D-alanyl-alanine synthetase
           A/UDP-N-acetylmuramate--L-alanine ligase [Chlamydia
           trachomatis G/11222]
          Length = 803

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 89/338 (26%), Positives = 146/338 (43%), Gaps = 49/338 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44
           + ++ GG S E E+S+ S K  A  L  + + VS   + R  GL                
Sbjct: 450 LGIICGGKSCEHEISVLSAKNIAKHLSKSFYDVSYFLITRE-GLWESVSSLETAEDSGKS 508

Query: 45  -----VLAHL-KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQ 98
                +   L K D+   +LHG +GEDG +Q  LE +  PYT   I  SA++M+K+ +K+
Sbjct: 509 VFDPEIAQRLEKVDVVLPILHGPYGEDGAMQGFLETIGKPYTGPAIAFSAIAMNKVFTKR 568

Query: 99  VVSSCGVPVCPSILVNRFTMDSQ------HLI---SPPYVIKPLKGGSSLGIIVIKKDQS 149
            +S  G+PV P + +       +      H++   S P  +K    GSS+G+  +     
Sbjct: 569 FMSDLGIPVVPYLPLTLAGWKQEQDKWLAHIVEAFSFPIFVKSSHLGSSIGVFEVHNVIE 628

Query: 150 IPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK----SDFYSYELK 205
           +  D +  +     D  + E  +   E+   V+GD S       + +      F  Y+ K
Sbjct: 629 LR-DAINEAFMRDNDVFVEENRLGCKEIEVSVLGDGSGAFVVAGLHERRGSGGFIDYQEK 687

Query: 206 Y--SSLNSTHVLPAKIPLDIYKEVQRLAFLA----HQAIGCRGISRSDFLFDPLSRKVFW 259
           Y  S  +S  ++      D+ KE+Q     A    ++ +  +G  R DF  D      FW
Sbjct: 688 YGLSGKSSAQIV---FDTDLSKEIQEQILEAADKIYRLLLGKGSCRIDFFVDEEGN--FW 742

Query: 260 L-EINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           L E+N  PGMT  S F       G+S+ +++  +V D 
Sbjct: 743 LSEMNPIPGMTETSPFLTSFIRKGWSYEQIVHQLVIDG 780


>gi|758375|gb|AAA87682.1| putative D-alanine:D-alanine ligase [Lactobacillus plantarum]
          Length = 201

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 61/191 (31%), Positives = 107/191 (56%), Gaps = 14/191 (7%)

Query: 71  ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFTMDSQHL---I 124
           + +LL+ PY  SG+LASA S DK  +KQ+++   +     ++V   NR  M   +L   +
Sbjct: 1   LFKLLKKPYVGSGVLASAASFDKDITKQILTHHHIQNTKYVVVTPENRDQMTYAYLQAHV 60

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMG 183
                IKP   GSS+GI   + +Q   LD L + ++ +  ++L+E+ +D   E+ C ++G
Sbjct: 61  GDHLSIKPANQGSSIGIHKAENEQEY-LDGL-ADAFKYDYKILVEESIDNPREVECSILG 118

Query: 184 DASLDVTE---IAVPKSD-FYSYELKYSSLNS-THVLPAKIPLDIYKEVQRLAFLAHQAI 238
           + +   ++   I VPK+D FY Y   +   +  T  LP ++P D+ K +Q++   A +A+
Sbjct: 119 NENPKASKLGAIDVPKTDTFYDYNNMFVDASGVTFELPVELPADLTKRIQQMCVDAFRAL 178

Query: 239 GCRGISRSDFL 249
           G +G++R DFL
Sbjct: 179 GLKGMARVDFL 189


>gi|297748892|gb|ADI51438.1| UDP-N-acetylmuramate--alanine ligase [Chlamydia trachomatis D-EC]
 gi|297749772|gb|ADI52450.1| UDP-N-acetylmuramate--alanine ligase [Chlamydia trachomatis D-LC]
          Length = 833

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 89/338 (26%), Positives = 146/338 (43%), Gaps = 49/338 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44
           + ++ GG S E E+S+ S K  A  L  + + VS   + R  GL                
Sbjct: 480 LGIICGGKSCEHEISVLSAKNIAKHLSKSFYDVSYFLITRE-GLWESVSSLETAEDSGKS 538

Query: 45  -----VLAHL-KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQ 98
                +   L K D+   +LHG +GEDG +Q  LE +  PYT   I  SA++M+K+ +K+
Sbjct: 539 VFDPEIAQRLEKVDVVLPILHGPYGEDGAMQGFLETIGKPYTGPAIAFSAIAMNKVFTKR 598

Query: 99  VVSSCGVPVCPSILVNRFTMDSQ------HLI---SPPYVIKPLKGGSSLGIIVIKKDQS 149
            +S  G+PV P + +       +      H++   S P  +K    GSS+G+  +     
Sbjct: 599 FMSDLGIPVVPYLPLTLAGWKQEQDKWLAHIVEAFSFPIFVKSSHLGSSIGVFEVHNVIE 658

Query: 150 IPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK----SDFYSYELK 205
           +  D +  +     D  + E  +   E+   V+GD S       + +      F  Y+ K
Sbjct: 659 LR-DAINEAFMRDNDVFVEENRLGCKEIEVSVLGDGSGAFVVAGLHERRGSGGFIDYQEK 717

Query: 206 Y--SSLNSTHVLPAKIPLDIYKEVQRLAFLA----HQAIGCRGISRSDFLFDPLSRKVFW 259
           Y  S  +S  ++      D+ KE+Q     A    ++ +  +G  R DF  D      FW
Sbjct: 718 YGLSGKSSAQIV---FDTDLSKEIQEQILEAADKIYRLLLGKGSCRIDFFVDEEGN--FW 772

Query: 260 L-EINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           L E+N  PGMT  S F       G+S+ +++  +V D 
Sbjct: 773 LSEMNPIPGMTETSPFLTSFIRKGWSYEQIVHQLVIDG 810


>gi|2245422|gb|AAB62519.1| D-alanine:D-alanine ligase [Streptococcus anginosus SK52]
          Length = 197

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 60/191 (31%), Positives = 101/191 (52%), Gaps = 18/191 (9%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV-------NRFTMDSQHLI 124
           LE+L++PY    IL+S+++MDK+ +K+V++S G+P  P + V        +      +L 
Sbjct: 2   LEVLKMPYVGCNILSSSVAMDKITTKRVLASAGIPQVPYVAVIEGENIDEKIAAVEANLT 61

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS---SWNHGDQLLIEQYVDGIELTCGV 181
            P +  KP   GSS+GI      +S   D L+S+   ++ +  ++LIEQ V+  E+  G+
Sbjct: 62  YPVFT-KPSNMGSSVGI-----SKSENQDELRSALELAFKYDSRVLIEQGVNAREIEVGL 115

Query: 182 MGD--ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
           +G+  A   +    V    FY YE KY     T  +PAK+  D+   +++ A     AIG
Sbjct: 116 LGNEGAKSSLPGEVVKDVAFYDYEAKYIDNKITIDIPAKLSEDVIATMRQYAEKRFHAIG 175

Query: 240 CRGISRSDFLF 250
             G++R DF +
Sbjct: 176 GVGLARCDFFY 186


>gi|166154104|ref|YP_001654222.1| UDP-N-acetylmuramate--alanine ligase [Chlamydia trachomatis 434/Bu]
 gi|166154979|ref|YP_001653234.1| UDP-N-acetylmuramate--alanine ligase [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
 gi|301335342|ref|ZP_07223586.1| bifunctional D-alanyl-alanine synthetase
           A/UDP-N-acetylmuramate--L-alanine ligase [Chlamydia
           trachomatis L2tet1]
 gi|165930092|emb|CAP03575.1| UDP-N-acetylmuramate--alanine ligase [Chlamydia trachomatis 434/Bu]
 gi|165930967|emb|CAP06529.1| UDP-N-acetylmuramate--alanine ligase [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
          Length = 803

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 89/338 (26%), Positives = 146/338 (43%), Gaps = 49/338 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44
           + ++ GG S E E+S+ S K  A  L  + + VS   + R  GL                
Sbjct: 450 LGIICGGKSCEHEISVLSAKNIAKHLSKSFYDVSYFLITRE-GLWESVSSLETAEDSGKS 508

Query: 45  -----VLAHL-KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQ 98
                +   L K D+   +LHG +GEDG +Q  LE +  PYT   I  SA++M+K+ +K+
Sbjct: 509 VFDPEIAQRLEKVDVVLPILHGPYGEDGAMQGFLETIGKPYTGPAIAFSAIAMNKVFTKR 568

Query: 99  VVSSCGVPVCPSILVNRFTMDSQ------HLI---SPPYVIKPLKGGSSLGIIVIKKDQS 149
            +S  G+PV P + +       +      H++   S P  +K    GSS+G+  +     
Sbjct: 569 FMSDLGIPVVPYLPLTLAGWKQEQDKWLAHIVEAFSFPMFVKSSHLGSSIGVFEVHNVIE 628

Query: 150 IPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK----SDFYSYELK 205
           +  D +  +     D  + E  +   E+   V+GD S       + +      F  Y+ K
Sbjct: 629 LR-DAINEAFMRDNDVFVEENRLGCKEIEVSVLGDGSGAFVIAGLHERRGSGGFIDYQEK 687

Query: 206 Y--SSLNSTHVLPAKIPLDIYKEVQRLAFLA----HQAIGCRGISRSDFLFDPLSRKVFW 259
           Y  S  +S  ++      D+ KE+Q     A    ++ +  +G  R DF  D      FW
Sbjct: 688 YGLSGKSSAQIV---FDTDLSKEIQEQILEAADKIYRLLLGKGSCRIDFFVDEEGN--FW 742

Query: 260 L-EINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           L E+N  PGMT  S F       G+S+ +++  +V D 
Sbjct: 743 LSEMNPIPGMTETSPFLTSFIRKGWSYEQIVHQLVIDG 780


>gi|20093140|ref|NP_619215.1| hypothetical protein MA4352 [Methanosarcina acetivorans C2A]
 gi|19918479|gb|AAM07695.1| hypothetical protein (multi-domain) [Methanosarcina acetivorans
           C2A]
          Length = 703

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 76/268 (28%), Positives = 120/268 (44%), Gaps = 23/268 (8%)

Query: 50  KPDLAFNVLHGNFGEDGL----VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV 105
           K DL  N+    F  D +    V A+LE   IPYT +G    +   DK   +       +
Sbjct: 373 KTDLVLNLCDEGFNNDPIKELHVPALLEQFNIPYTGAGPQCLSFCYDKSLVRGAAREMRI 432

Query: 106 PVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGII---VIKKDQSIPLDLLQSSSWNH 162
           PV   +LV   +  S   +S P ++KP  G SS GI    ++   + I  D+++ +    
Sbjct: 433 PVAKGVLVTGDSDVSSFSLSFPLLVKPNSGDSSYGITQKSIVHSREEI-FDIMKETREKI 491

Query: 163 G--DQLLIEQYVDGIELTCGVMGDAS----LDVTE---IAVPKS--DFYSYELKY---SS 208
           G     L+E+++ G +++ G++G+      L +TE    AVP+       YE K+   S 
Sbjct: 492 GADKPFLLEEFLPGKDISVGIIGNPPFCTVLPITEEDYSAVPEDLPRICGYEAKWLPDSP 551

Query: 209 LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268
                 +PA +P    KE+ R        +GCR  +R D+  D   R    LE+N  PG 
Sbjct: 552 YWKIKSVPAGLPEKTEKEIVRCCLALFTRLGCRDYARFDWRLDAEGRPKL-LEVNPNPGW 610

Query: 269 TPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                  +MAAYA  S+  +L  ++E A
Sbjct: 611 CWDGHLAKMAAYANISYSGMLAAILEAA 638


>gi|330883773|gb|EGH17922.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. glycinea str.
           race 4]
          Length = 119

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 53/116 (45%), Positives = 69/116 (59%), Gaps = 2/116 (1%)

Query: 28  DAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87
           DAG     IDV       L   K D AF VLHG  GEDG +Q +LE LEIPYT SG+LAS
Sbjct: 3   DAGVDAFGIDVGDDFLQRLVSEKIDRAFIVLHGRGGEDGTMQGLLECLEIPYTGSGVLAS 62

Query: 88  ALSMDKMRSKQVVSSCGVPV-CPSILVNRF-TMDSQHLISPPYVIKPLKGGSSLGI 141
           AL+MDK+R+KQV  S G+     ++L N    + +   +  P ++KP   GSS+G+
Sbjct: 63  ALAMDKLRTKQVWQSLGLATPLHAVLGNESDCICAATELGFPLIVKPAHEGSSIGM 118


>gi|7157939|gb|AAF37349.1|AF170810_1 D-alanine:D-alanine ligase [Enterococcus sulfureus]
          Length = 200

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 51/191 (26%), Positives = 97/191 (50%), Gaps = 13/191 (6%)

Query: 71  ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--SILVNRFTMDSQHLISP-- 126
            LE+L++PY  +G++ SA  MDK+ +K ++ + G+P  P   +L +++  + + +     
Sbjct: 1   FLEVLDMPYIGAGVVTSACDMDKIMTKYILQAAGIPQVPYMPVLEHQWKENPKQVFEQCE 60

Query: 127 -----PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
                P  +KP   GSS+GI   K +  + L    + ++ +  +++IEQ ++  E+   V
Sbjct: 61  GSLLYPMFVKPANMGSSVGI--SKAENRLELQAALAEAYKYDSRVVIEQGIEAREIEVAV 118

Query: 182 MGDASLDVTEIA--VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
           +G+  +  T     V    FY Y  KY   N    +PA++  ++ ++ Q  A  A+  +G
Sbjct: 119 LGNEDVRTTAAGEIVKDVAFYDYNSKYIDNNIEMQIPAQVSDEVQQKAQEYAKKAYIMLG 178

Query: 240 CRGISRSDFLF 250
             G+SR DF  
Sbjct: 179 GSGLSRCDFFL 189


>gi|255349159|ref|ZP_05381166.1| UDP-N-acetylmuramate--alanine ligase [Chlamydia trachomatis 70]
 gi|255503696|ref|ZP_05382086.1| UDP-N-acetylmuramate--alanine ligase [Chlamydia trachomatis 70s]
          Length = 803

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 88/338 (26%), Positives = 146/338 (43%), Gaps = 49/338 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44
           + ++ GG S E E+S+ S K  A  L  + + VS   + R  GL                
Sbjct: 450 LGIICGGKSCEHEISVLSAKNIAKHLSKSFYDVSYFLITRE-GLWESVSSLETAEDSGKS 508

Query: 45  -----VLAHL-KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQ 98
                +   L K D+   +LHG +GEDG +Q  LE +  PYT   I  SA++M+K+ +K+
Sbjct: 509 VFDPEIAQRLEKVDVVLPILHGPYGEDGAMQGFLETIGKPYTGPAIAFSAIAMNKVFTKR 568

Query: 99  VVSSCGVPVCPSILVNRFTMDSQ------HLI---SPPYVIKPLKGGSSLGIIVIKKDQS 149
            +S  G+PV P + +       +      H++   S P  +K    GSS+G+  +     
Sbjct: 569 FMSDLGIPVVPYLPLTLAGWKQEQDKWLAHIVEAFSFPMFVKSSHLGSSIGVFEVHNVIE 628

Query: 150 IPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK----SDFYSYELK 205
           +  D +  +     D  + E  +   E+   V+GD S       + +      F  Y+ K
Sbjct: 629 LR-DAINEAFMRDNDVFVEENRLGCKEIEVSVLGDGSGAFVVAGLHERRGSGGFIDYQEK 687

Query: 206 Y--SSLNSTHVLPAKIPLDIYKEVQRLAFLA----HQAIGCRGISRSDFLFDPLSRKVFW 259
           Y  S  +S  ++      D+ KE+Q     A    ++ +  +G  R DF  D      FW
Sbjct: 688 YGLSGKSSAQIV---FDTDLSKEIQEQILEAADKIYRLLLGKGSCRIDFFVDEEGN--FW 742

Query: 260 L-EINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           L E+N  PGMT  S F       G+S+ +++  ++ D 
Sbjct: 743 LSEMNPIPGMTETSPFLTSFIRKGWSYEQIVHQLIIDG 780


>gi|294101201|ref|YP_003553059.1| D-alanine--D-alanine ligase [Aminobacterium colombiense DSM 12261]
 gi|293616181|gb|ADE56335.1| D-alanine--D-alanine ligase [Aminobacterium colombiense DSM 12261]
          Length = 367

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 78/299 (26%), Positives = 139/299 (46%), Gaps = 20/299 (6%)

Query: 16  LSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG--NF-GEDGLVQAIL 72
           L + +A ++ +   GF+V   + +  +   L  + PD   N+  G  N+ G +  V  IL
Sbjct: 50  LETVEALSNEIASLGFQVFLFEQNELLLQKLDSIAPDFVLNIAEGLGNYRGRESQVPCIL 109

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL-----ISPP 127
           E L IP++ S   + A+++DK+ +  V+ +  +P  P   V +   D+            
Sbjct: 110 ESLNIPFSGSDSASLAIALDKVLTSHVLRASNIPA-PKNYVAKLPQDTTEKKVIFNTCQK 168

Query: 128 YVIKPLKGGSSLGIIVIK-KDQSIPLDLLQSSSWNHGDQ-LLIEQYVDGIELTCGVMGDA 185
           Y+IKP   GSS GI +    D    +       W   +Q  ++E+++ GIE+T GV G+ 
Sbjct: 169 YIIKPRWEGSSKGIFLDSIADTPEKVKTCIKRIWERYNQPAIVEEFLPGIEITAGVAGNT 228

Query: 186 S------LDVTEIAVPKSDFYSYELKYSSLNS-THVLPAKIPLDIYKEVQRLAFLAHQAI 238
                  + +T +    S  YS E K + L    +  P  +   + K++  LA  A +A+
Sbjct: 229 QPKCIGMMSITPVTENSSFLYSLEEKRNYLERIRYSGPDSMSPQLRKKIGDLAVRAFKAL 288

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV-SIFPEMAAYAGYSFRELLLWMVEDA 296
             R I+R DF  D   +    ++IN  PG++P  S  P +   +G  + EL+  ++ +A
Sbjct: 289 ELRDIARIDFRLDDKGQPRV-IDINPLPGLSPAYSDLPILYRLSGGEYSELIQTILREA 346


>gi|78358082|ref|YP_389531.1| D-alanine--D-alanine ligase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78220487|gb|ABB39836.1| D-alanine--D-alanine ligase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 349

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 70/258 (27%), Positives = 117/258 (45%), Gaps = 17/258 (6%)

Query: 52  DLAFNVLHG--NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109
           D+ FN+  G   FG +  V A+L+   +PY  S  +   + + K  +K +V   G+P   
Sbjct: 66  DIVFNIAEGCHGFGRESQVPALLDYYSVPYVFSDPMTLGICLHKGMTKHIVRDNGIPTAD 125

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW---NHGDQL 166
            ++++     +   +  P  +KP+  G+ +G+    K Q+ P +L  + +     H   +
Sbjct: 126 FVVISDPAEAAAVSLPYPLFVKPVAEGTGIGVGAASKVQN-PQELAAACARLIDRHRQPV 184

Query: 167 LIEQYVDGIELTCGVMGD-------ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI 219
           L+E ++ G ELT G+ G         +L+V      +SD Y Y  K   L       A  
Sbjct: 185 LVETFLCGRELTVGITGTGAGARTLGALEVVFAPAAESDVYGYVNKAEYLERVQYHLAD- 243

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV-SIFPEMA 278
             D  K  + +A  A +A+GCR   R D  FD      F +E+N   G+ PV S  P M 
Sbjct: 244 DADAQK-ARHVALAAWRALGCRDGGRVDLRFDARGVPNF-IEVNPLAGLNPVNSDLPIMC 301

Query: 279 AYAGYSFRELLLWMVEDA 296
             AG  + +L+  ++E A
Sbjct: 302 YKAGLRYEQLIGQIMESA 319


>gi|166240878|ref|ZP_02240750.1| Ddl [Paenibacillus larvae subsp. larvae BRL-230010]
          Length = 241

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 62/208 (29%), Positives = 97/208 (46%), Gaps = 17/208 (8%)

Query: 77  IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---------FTMDSQHLISPP 127
           IPY  +G+LASA+ MDK+  K+V +   +P C      R         F M  +  I  P
Sbjct: 2   IPYAGAGVLASAVGMDKVIMKKVFAQEDLPQCVFRHFTRSQWQKDQPFFLMGLEISIGYP 61

Query: 128 YVIKPLKGGSSLGIIVIK-KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186
             IKP   GSS+GI   + +D+ I        ++ +  +++IE++V+  E+   V+G+  
Sbjct: 62  CFIKPANLGSSVGISKARNRDELIKA---VEEAFKYDRKVIIEEFVEAREIEVAVLGNEE 118

Query: 187 LDVTE----IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            +V+     I+   SDFY Y+ KY   NS  V+PA IP +   ++Q       + I    
Sbjct: 119 PEVSVPGEIISSKNSDFYDYKAKYQDGNSIMVIPADIPEETAAQIQEXXIXXFKXIXXSX 178

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTP 270
           +S  DF        +    IN  P  TP
Sbjct: 179 LSXLDFFMRNSXXHIXINXINTXPXFTP 206


>gi|157375059|ref|YP_001473659.1| D-alanyl-alanine synthetase A [Shewanella sediminis HAW-EB3]
 gi|189083056|sp|A8FUK8|DDL_SHESH RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|157317433|gb|ABV36531.1| D-alanine--D-alanine ligase [Shewanella sediminis HAW-EB3]
          Length = 333

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 70/252 (27%), Positives = 118/252 (46%), Gaps = 20/252 (7%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D     +HG  GE G +Q+  EL+ +PY      AS    +K+ +K   S+ G+P  P I
Sbjct: 79  DYVIPCIHGYPGETGDIQSYFELINLPYFGCDSEASRNCFNKVTAKMWFSALGIPNTPYI 138

Query: 112 LVNRFTMDS-----QHLISPPYV-IKPLKGGSSLGIIVIKKDQSIPLDLLQSS---SWNH 162
            +N F  D+     Q L +   V IK    GSS+G   +       +D L SS   ++++
Sbjct: 139 FLNEFNDDAISQTEQALETWGSVFIKAASQGSSVGCYRVDS-----IDELASSLKEAFSY 193

Query: 163 GDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYSSLNSTHV-LPA 217
              +++E+ +   EL       D  +  T   EI    + FY+++ KY++ +     + A
Sbjct: 194 SPYVVVEKTIHARELEVAAYELDGEIVATKPGEIICASNTFYTFDEKYAADSQAETKVEA 253

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
            I  ++ +E++  A    + +    +SR DF       ++   EIN  PG+TP+S+FP+M
Sbjct: 254 DISDELSREIREYAVKVFKGMKLSHLSRIDFFLTD-ENEILLNEINTFPGLTPISMFPKM 312

Query: 278 AAYAGYSFRELL 289
               G  F E L
Sbjct: 313 LQNHGDDFTEYL 324


>gi|57790304|gb|AAW56079.1| vancomycin resistance protein A [Enterococcus faecium]
          Length = 205

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 58/194 (29%), Positives = 97/194 (50%), Gaps = 9/194 (4%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+AF+ LHG  GEDG +Q + EL  IP+    I +SA+ MDK  +  V  + G+      
Sbjct: 14  DVAFSALHGKSGEDGSIQGLFELSGIPFVGCDIQSSAICMDKSLTYIVAKNAGIATPAFW 73

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
           ++N+         + P  +KP + GSS G  V K + +  LD    S+  +  ++LIEQ 
Sbjct: 74  VINKDDRPVAATFTYPVFVKPARSGSSFG--VKKVNSADELDYAIESARQYDSKILIEQA 131

Query: 172 VDGIELTCGVMGD-ASLDVTEIAVPKSDFYSY------ELKYSSLNSTHVLPAKIPLDIY 224
           V G E+ C V+G+ A+L V E+   +  +  +      E +  S N+   +PA +  +  
Sbjct: 132 VSGCEVGCAVLGNSAALAVGEVDQIRLQYGIFRIHQEVEPEKGSENAVITVPADLSAEER 191

Query: 225 KEVQRLAFLAHQAI 238
             +Q  A   ++A+
Sbjct: 192 GRIQETAKKIYKAL 205


>gi|325981999|ref|YP_004294401.1| D-alanine--D-alanine ligase [Nitrosomonas sp. AL212]
 gi|325531518|gb|ADZ26239.1| D-alanine--D-alanine ligase [Nitrosomonas sp. AL212]
          Length = 361

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 87/309 (28%), Positives = 139/309 (44%), Gaps = 30/309 (9%)

Query: 7   GISSEREVSLSSGK---ACASALEDAGFKVSQIDVDRSVGLVLAHLKP--DLAFNVLHGN 61
           G+  ER     S     A A+ALE  G  V  IDV + +   L   K   DL FN   G 
Sbjct: 16  GMEDERYGEFESPATIAAVATALERVGADVEVIDVGKDIYHQLEKRKHQIDLVFNNAEG- 74

Query: 62  FGEDGLVQAIL----ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117
             E  L +AI+    E L IPYT S        MDK  +K++V+  GVP     L+    
Sbjct: 75  LEEKELREAIVPFFCEHLGIPYTGSSPKTFINKMDKATAKRIVAYEGVPTAKFQLM--VP 132

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKK-DQSIPLDLLQSSSWNHGDQ-LLIEQYVDGI 175
            D    ++ P ++KP   G+S+GI    K      L    ++ ++  DQ  L+E+++ G 
Sbjct: 133 GDQLKDLTFPLMVKPYSEGTSIGISQKSKVHNEAELTAAIAAVYSQCDQAALVEEFLPGT 192

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL-------DIYKEVQ 228
           E T G++G+  L + EI       ++    +  L   HV   + P        D  +   
Sbjct: 193 EYTIGLIGNYVLPILEIN------FANIPGHPQLRDPHVKSIENPYISHMAWTDQARNFA 246

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI-FPEMAAYAGYSFRE 287
           ++A  AH+A+  R  +R DF       ++++LE NV PG+ P       M  + G + ++
Sbjct: 247 KMAIAAHEALEARDYNRMDFRVR--EGQLYFLEANVIPGIHPTDADLTNMCRHVGIAHQD 304

Query: 288 LLLWMVEDA 296
           ++  +V+ A
Sbjct: 305 MVALIVDKA 313


>gi|311351628|gb|ADP92999.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351630|gb|ADP93000.1| D-alanine-D-alanine ligase [Clostridium perfringens]
          Length = 196

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 53/187 (28%), Positives = 104/187 (55%), Gaps = 7/187 (3%)

Query: 66  GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF-TMDSQHL- 123
           G VQ++L+ L IP++  G L+SA+ MDK  +K++++   V     I+V+    +D + + 
Sbjct: 1   GTVQSVLKTLGIPFSGCGPLSSAICMDKDMTKRILAFGNVRTARWIMVSSVDEIDYEKIE 60

Query: 124 -ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            +  P  IKP  GGSS+   +++  +++   +L++  ++   +++IE+Y+ G E+TC ++
Sbjct: 61  NLGYPVFIKPNNGGSSVATTLVESKEAVKDAVLEALKYDT--EVMIEEYIKGDEITCPII 118

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
               L V  I  PK  F+    KY    +   +  K+  D++KEV+++A   ++ + C  
Sbjct: 119 DGKMLPVLAIK-PKGKFFDIASKYEDGGADEFI-VKLNEDLHKEVEKMALETYKLLKCDV 176

Query: 243 ISRSDFL 249
            +R D L
Sbjct: 177 YARVDML 183


>gi|2245426|gb|AAB62520.1| D-alanine:D-alanine ligase [Streptococcus intermedius]
          Length = 197

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 61/190 (32%), Positives = 98/190 (51%), Gaps = 16/190 (8%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLIS 125
           LE+L++PY    IL+S+++MDK+ +K+V++S G+P  P +       V     + +  ++
Sbjct: 2   LEVLKMPYVGCNILSSSIAMDKITTKRVLASAGIPQVPYVAVVEGEDVEEKIAEVEVNLT 61

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS---SWNHGDQLLIEQYVDGIELTCGVM 182
            P   KP   GSS+GI      +S   D L S+   ++ +  ++LIEQ V+  E+  G+ 
Sbjct: 62  YPVFTKPSNMGSSVGI-----SKSENKDELCSALKLAFKYDTRVLIEQGVNAREIEVGLF 116

Query: 183 GD--ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           G+  A   +    V    FY YE KY     T  +PAK+  D+   +   A  A  AIG 
Sbjct: 117 GNEGAKSSLPGEVVKDVAFYDYEAKYIDNKITMDIPAKLSEDVIATMCDYAEKAFHAIGG 176

Query: 241 RGISRSDFLF 250
            G+SR DF +
Sbjct: 177 VGLSRCDFFY 186


>gi|268679679|ref|YP_003304110.1| D-alanine/D-alanine ligase [Sulfurospirillum deleyianum DSM 6946]
 gi|268617710|gb|ACZ12075.1| D-alanine/D-alanine ligase [Sulfurospirillum deleyianum DSM 6946]
          Length = 344

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 70/273 (25%), Positives = 131/273 (47%), Gaps = 15/273 (5%)

Query: 8   ISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGL 67
           I+S+R  S    K  A  ++  GF   ++  +  +         D+  N++HG  GEDG 
Sbjct: 51  ITSKRFSSGEYKKDKALHVKQGGFYAKKMLGEEQISF-------DVMINLVHGRDGEDGK 103

Query: 68  VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPP 127
           + A+L+   IPY    + A ++S +K+ +K      GV V P  L+++ + ++   I+ P
Sbjct: 104 LSALLDFFGIPYIGPRMEACSISYNKLFTKLYAKEVGVNVLPYQLLHKGSNEAIS-IAYP 162

Query: 128 YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI-ELTCGVMGDAS 186
           +++KPL+ GSS+GI ++K+++ +   L    ++   D +LIE ++ G+ E         S
Sbjct: 163 FIVKPLRLGSSIGIGIVKEEKELAYAL--DVAFEFDDTVLIEPFISGVKEYNLAGCKTDS 220

Query: 187 LDVTEIAVPKSD-FYSYELKYSSLNST-HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244
              + I  P+ + F  ++ KY   + T  V  A + + + KE+Q      +  +    + 
Sbjct: 221 FTFSIIEEPQKEAFLDFDKKYLDFSRTKRVNEASLEVTLEKEIQTSFIKLYDPLFLGALI 280

Query: 245 RSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
           R DF    +   V+  EIN  PG     +F + 
Sbjct: 281 RCDFFV--IDGVVYLNEINPVPGSMANYLFDDF 311


>gi|328463794|gb|EGF35346.1| D-alanine--D-alanine ligase [Lactobacillus rhamnosus MTCC 5462]
          Length = 252

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 72/254 (28%), Positives = 113/254 (44%), Gaps = 52/254 (20%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------------------- 38
           + VL GG S+ER VS+SSG    +AL   G + + ID+                      
Sbjct: 3   IVVLAGGRSTERNVSISSGYRITNALRQKGQQATFIDLFLGYDLEGKTVDQVFDDANTSK 62

Query: 39  -------------------DRSVGL----VLAHLKP-DLAFNVLHGNFGEDGLVQAILEL 74
                              D S  L    VLA  K  D+ F  LHG  GE+G VQA L+L
Sbjct: 63  DLKISDAILTDADINKLRTDGSTQLFGPNVLAICKAADIVFLALHGGDGENGKVQATLDL 122

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI--SPPYVIKP 132
             + YT SG LAS ++M+K+ SK+V+   G+         R   + +H +    P V+KP
Sbjct: 123 NNVKYTGSGPLASGITMNKVFSKEVMLYHGIQTAAFKEFKR-NQNGKHTVPFDFPVVVKP 181

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192
             GGSS+G  +    + +   +  +  +   +  ++E++  G E + GV+   +    EI
Sbjct: 182 TSGGSSVGTHIAHNQEELENGI--ADVFRFDNSAIVEEFTPGREFSLGVVNGRAFSAIEI 239

Query: 193 AVPKSDFYSYELKY 206
            V  S +Y ++ K+
Sbjct: 240 KV-HSGWYDFKHKF 252


>gi|269927660|gb|ACZ53133.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927664|gb|ACZ53135.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
          Length = 210

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 64/213 (30%), Positives = 113/213 (53%), Gaps = 17/213 (7%)

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFTMDS---QHLISPPYVIKPLKGG 136
            I+ASA+S DK  +K+++S  G+   P ++V   NR        +  +     +KP K G
Sbjct: 1   NIVASAMSFDKDLTKKIISQAGIRNTPYVVVTPENRADYSWGRIEEKLGNLTFVKPAKQG 60

Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDA---SLDVTEI 192
           SS+GI  +   +     L  +  +++  ++L+EQ + +  E+   ++G+    +  +  +
Sbjct: 61  SSVGIHRVTNAEEYEKALDDAFKYDY--KILVEQGIANPQEIEISILGNEHPIASKLGAV 118

Query: 193 AVPKSD-FYSYELKYSSLNST-HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
            VPK D FY YE K+   +     LP K+P  +  E+  +A  A++A+G +G++R DFL 
Sbjct: 119 RVPKDDPFYDYENKFVDASGVVFELPVKLPQYLVDEITDMALKAYKALGMKGMARIDFLV 178

Query: 251 DPLSRKVFWL-EINVQPGMTPVSIFPEMAAYAG 282
           D  S  V +L E N  PG T +S++P+M   +G
Sbjct: 179 D--SNNVPYLGEPNTLPGFTNISLYPQMWEVSG 209


>gi|269927454|gb|ACZ53030.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927466|gb|ACZ53036.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927468|gb|ACZ53037.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927478|gb|ACZ53042.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927484|gb|ACZ53045.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927486|gb|ACZ53046.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927496|gb|ACZ53051.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927506|gb|ACZ53056.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927514|gb|ACZ53060.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927522|gb|ACZ53064.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927524|gb|ACZ53065.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927526|gb|ACZ53066.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927532|gb|ACZ53069.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927546|gb|ACZ53076.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927548|gb|ACZ53077.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927550|gb|ACZ53078.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927554|gb|ACZ53080.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927562|gb|ACZ53084.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927566|gb|ACZ53086.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927572|gb|ACZ53089.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927578|gb|ACZ53092.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927582|gb|ACZ53094.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927586|gb|ACZ53096.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927588|gb|ACZ53097.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927606|gb|ACZ53106.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927608|gb|ACZ53107.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927610|gb|ACZ53108.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927614|gb|ACZ53110.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927616|gb|ACZ53111.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927624|gb|ACZ53115.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927626|gb|ACZ53116.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927636|gb|ACZ53121.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927638|gb|ACZ53122.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927646|gb|ACZ53126.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927648|gb|ACZ53127.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927650|gb|ACZ53128.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927668|gb|ACZ53137.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927670|gb|ACZ53138.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927672|gb|ACZ53139.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927678|gb|ACZ53142.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927680|gb|ACZ53143.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
          Length = 210

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 66/214 (30%), Positives = 116/214 (54%), Gaps = 19/214 (8%)

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILV---NR----FTMDSQHLISPPYVIKPLKG 135
            I ASA+S DK  +K+++S  G+   P ++V   NR    ++   + L +  +V KP K 
Sbjct: 1   NIAASAMSFDKDLTKKIISQAGIRNTPYVVVTPENRADYSWSRIEEKLGNLTFV-KPAKQ 59

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDA---SLDVTE 191
           GSS+GI  +   +     L  +  +++  ++L+EQ + +  E+   ++G+    +  +  
Sbjct: 60  GSSVGIHRVTNAEEYEKALDDAFKYDY--KILVEQGIANPQEIEISILGNEHPIASKLGA 117

Query: 192 IAVPKSD-FYSYELKYSSLNST-HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
           + VPK D FY YE K+   +     LP K+P  +  E+  +A  A++A+G +G++R DFL
Sbjct: 118 VRVPKDDPFYDYENKFVDASGVVFELPVKLPQYLVDEITDMALKAYKALGMKGMARIDFL 177

Query: 250 FDPLSRKVFWL-EINVQPGMTPVSIFPEMAAYAG 282
            D  S  V +L E N  PG T +S++P+M   +G
Sbjct: 178 VD--SNNVPYLGEPNTLPGFTNISLYPQMWEVSG 209


>gi|150391473|ref|YP_001321522.1| D-alanine--D-alanine ligase domain-containing protein [Alkaliphilus
           metalliredigens QYMF]
 gi|149951335|gb|ABR49863.1| D-alanine--D-alanine ligase domain protein [Alkaliphilus
           metalliredigens QYMF]
          Length = 714

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 71/313 (22%), Positives = 146/313 (46%), Gaps = 20/313 (6%)

Query: 4   LMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKPDLAF 55
           L G ++ E+   L +       L   G +V   + D+++          V++  +P L F
Sbjct: 17  LFGTLNREK-YGLETINKIKEGLTAGGHQVKTFEGDKNIITKLEKFMPSVISGERPGLVF 75

Query: 56  NVLHGNFGEDGL--VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
           N+ +G  G+     V  ILE+L IPY  SG    A+++DK+ +K ++   G+P     ++
Sbjct: 76  NLSYGIQGKGRYMHVPGILEMLGIPYVGSGPETHAIALDKIVTKMILIQKGLPTPKFTVM 135

Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
           ++   + +  +  P ++KP     S G+ ++  ++ +  D +++         L+E+Y++
Sbjct: 136 DKPDSEIKDNLKYPLIVKPKDEAVSFGLKIVHNEEEL-RDGVKTIYEAFNTPTLVEEYIE 194

Query: 174 GIELTCGVMGDASLDV---TEIAVPKS-DFYSYELKYSSLNST--HVLPAKIPLDIYKEV 227
           G E+  G++G+  ++     E+   +    Y+YE K ++   T   + PA +  +  +++
Sbjct: 195 GREINVGLLGNNPVEAMPPVELTFGEGLQIYTYEDKKNTSGRTVEKICPAPLSDEKTEQI 254

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287
           ++LA     A+GC   +R DF  D      + LE+N    +     F   A   G  +  
Sbjct: 255 KQLAIDTFNALGCYDSARVDFRLDQEGNP-YILEVNSMASLGKSGSFVYAAEKMGLDYVA 313

Query: 288 LLLWMVEDASCLR 300
           L+  ++ D +C R
Sbjct: 314 LVNRLI-DVTCER 325


>gi|42794965|gb|AAS45838.1| putative D-alanine:D-alanine ligase [Clostridium difficile]
 gi|42794967|gb|AAS45839.1| putative D-alanine:D-alanine ligase [Clostridium difficile]
          Length = 141

 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 46/134 (34%), Positives = 77/134 (57%), Gaps = 10/134 (7%)

Query: 124 ISPPYVIKPLKGGSSLGI--IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
           ++ P  IKP++ GSS GI  I  K++  + +DL    ++ H ++++IE+ +DG E+ C V
Sbjct: 13  LTYPLFIKPVRAGSSFGISKIYKKEELQVAVDL----AFEHDNEVIIEENIDGFEVGCAV 68

Query: 182 MGDASL---DVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           +G+  L    V EI + K  F+ Y  KY+  +S   +PA+I LD  K +Q  A + ++ +
Sbjct: 69  LGNNDLLVGRVDEIELSKG-FFDYTEKYTLKSSKIHMPARIDLDCEKRIQETAKIIYRTL 127

Query: 239 GCRGISRSDFLFDP 252
           GC G +R D    P
Sbjct: 128 GCSGFARVDMFLTP 141


>gi|229089127|ref|ZP_04220426.1| D-alanine--D-alanine ligase [Bacillus cereus Rock3-44]
 gi|228694192|gb|EEL47869.1| D-alanine--D-alanine ligase [Bacillus cereus Rock3-44]
          Length = 228

 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 56/210 (26%), Positives = 104/210 (49%), Gaps = 14/210 (6%)

Query: 91  MDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSLGI 141
           MDK+  K + +  G+         R T +          + ++  P  +KP   GSS+GI
Sbjct: 1   MDKVVMKNIFAEAGLKQAKYASFIRSTWEKDRETAYEKVEEVLGYPCFVKPANLGSSVGI 60

Query: 142 IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA--VPKSDF 199
              K  +   LD     ++    ++++E+ + G E+  GV+G+     + +   VPK DF
Sbjct: 61  NKCKDREE--LDNAFEEAFQFDRKIIVEENIVGREVEVGVLGNDEPKCSVVGEIVPKKDF 118

Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
           Y Y+ KY   ++  ++PA++  +    ++R A +A Q++   G++R+DF F     +V+ 
Sbjct: 119 YDYKSKYIDGDTALIIPAEMTEEESDVIKRDAIIAFQSLDSAGLTRADF-FLTKDGEVYI 177

Query: 260 LEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
            E+N  PG TP S+FP +  +    + EL+
Sbjct: 178 NEVNTMPGFTPFSMFPLLWQHTNLPYPELI 207


>gi|269927476|gb|ACZ53041.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
          Length = 210

 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 65/213 (30%), Positives = 112/213 (52%), Gaps = 17/213 (7%)

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFTMDS---QHLISPPYVIKPLKGG 136
            I ASA+S DK  +K+++S  G+   P I+V   NR        +  +     +KP K G
Sbjct: 1   NIAASAMSFDKDLTKKIISQAGIRNTPYIVVTPENRADYSWGRIEEKLGNLTFVKPAKQG 60

Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDA---SLDVTEI 192
           SS+GI  +   +     L  +  +++  ++L+EQ + +  E+   ++G+    +  +  +
Sbjct: 61  SSVGIHRVTNAEEYEKALDDAFKYDY--KILVEQGIANPQEIEISILGNEHPIASKLGAV 118

Query: 193 AVPKSD-FYSYELKYSSLNST-HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
            VPK D FY YE K+   +     LP K+P  +  E+  +A  A++A+G +G++R DFL 
Sbjct: 119 RVPKDDPFYDYENKFVDASGVVFELPVKLPQYLVDEITDMALKAYKALGMKGMARIDFLV 178

Query: 251 DPLSRKVFWL-EINVQPGMTPVSIFPEMAAYAG 282
           D  S  V +L E N  PG T +S++P+M   +G
Sbjct: 179 D--SNNVPYLGEPNTLPGFTNISLYPQMWEVSG 209


>gi|21321301|dbj|BAB97388.1| D-alanine-D-alanine ligase [Pectobacterium chrysanthemi]
          Length = 368

 Score = 82.8 bits (203), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 79/288 (27%), Positives = 141/288 (48%), Gaps = 29/288 (10%)

Query: 24  SALEDAGFKVSQID-VDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
           SA  D G    +I+  D ++   + +   +  F   HG +GEDG +Q  L+ ++ PY  S
Sbjct: 65  SAFIDLGLNYKKIESTDNNLQYEINN--HNFVFIYAHGEYGEDGRLQGFLDYIDKPYPGS 122

Query: 83  GILASALSMDKMRSKQVV--SSCGVPVCPSILVNRFTMDSQH---LISPPYVIKPLKGGS 137
           G+LASA+  DK++ K ++  SS   P    + ++    D       +  P + K   GGS
Sbjct: 123 GVLASAVCCDKLKFKYLMTGSSVNTPNFYELNIHDSYSDVHKKALCLQYPIMAKERCGGS 182

Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-------IELTCGVMGDASLDVT 190
           SLGI  I  D+   L      + N  ++  +E+++ G       +++  GV+   +L+  
Sbjct: 183 SLGITYISNDE--DLHTWYEKNKNEINKYFLEKFISGRIISVGFVQMIEGVLILPTLE-- 238

Query: 191 EIAVPKSDFYSYELK--YSSLNSTHVL---PAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
              V  S++Y  ELK  +S  +  ++L    +K  +D  ++++  A  A +   C+G+ R
Sbjct: 239 --TVTNSNYYDAELKIGHSHHDVKYILNSFSSKEYID--RKIKETAIKAFEHAACQGVGR 294

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            D L    +  +F LEIN  PG++  S F +M    G+S+ EL++  +
Sbjct: 295 VD-LIIDDNDDIFILEINTIPGISKNSNFTKMFTSLGFSYNELVIAFI 341


>gi|311351626|gb|ADP92998.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351632|gb|ADP93001.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351638|gb|ADP93004.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351684|gb|ADP93027.1| D-alanine-D-alanine ligase [Clostridium perfringens]
          Length = 196

 Score = 82.8 bits (203), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 104/187 (55%), Gaps = 7/187 (3%)

Query: 66  GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF-TMDSQHL- 123
           G VQ++L+ L IP++  G L+SA+ MDK  +K++++   V     ++V+    +D + + 
Sbjct: 1   GTVQSVLKTLGIPFSGCGPLSSAICMDKDMTKRILAFGNVRTARWVMVSSVDEIDYEKIE 60

Query: 124 -ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            +  P  IKP  GGSS+   +++  +++   +L++  ++   +++IE+Y+ G E+TC ++
Sbjct: 61  NLGYPVFIKPNNGGSSVATTLVESKEAVKDAVLEALKYDT--EVMIEEYIKGDEITCPII 118

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
               L V  I  PK  F+    KY    +   +  K+  D++KEV+++A   ++ + C  
Sbjct: 119 DGKMLPVLAIK-PKGKFFDIASKYEDGGADEFI-VKLNEDLHKEVEKMALETYKLLKCDV 176

Query: 243 ISRSDFL 249
            +R D L
Sbjct: 177 YARVDML 183


>gi|300863798|ref|ZP_07108724.1| D-alanine--D-alanine ligase domain protein [Oscillatoria sp. PCC
           6506]
 gi|300338199|emb|CBN53870.1| D-alanine--D-alanine ligase domain protein [Oscillatoria sp. PCC
           6506]
          Length = 329

 Score = 82.8 bits (203), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 81/283 (28%), Positives = 138/283 (48%), Gaps = 20/283 (7%)

Query: 30  GFKVSQIDVDRSVGLVLAHL-KPDLAFNVLHGNFGE--DGLVQAILELLEIPYTHSGILA 86
           G KV +I   R + L L    + DL FN+  G  G   +  V A+ EL   PYT S  L 
Sbjct: 45  GHKVERIGNGRELALRLVKGDRWDLIFNIAEGLKGRSREAQVPAVCELFAQPYTFSDPLT 104

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGII---V 143
            AL++DK  +K+VV   G+P  P  +V+         +  P  +KP+  GSS GI    +
Sbjct: 105 CALTLDKAMTKRVVRDFGLPTAPFEVVSTSEQAIAISLPMPLFLKPIAEGSSKGITEKSL 164

Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS----LDVTEIA-VPKSD 198
           +K+ Q + + + Q+        +L+E ++ G E+  G++G+ +    + V EI    K++
Sbjct: 165 VKESQDL-VAVYQALQEEFQQPVLVETFLPGKEIAVGIVGNGNQARVIAVMEIIFTKKAE 223

Query: 199 FYSYEL----KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
             +Y      KY    S  +L    PL    + ++LA   + ++GC   +R +   D ++
Sbjct: 224 IAAYTALNKDKYLERVSYRLLTDPEPL--AAQARQLALDVYHSLGCLDAARVELRGD-VT 280

Query: 255 RKVFWLEINVQPGMTPV-SIFPEMAAYAGYSFRELLLWMVEDA 296
            ++ +LE+N   G+ P+ S    MA  AG  + +L+  +VE A
Sbjct: 281 GELQFLEVNPLSGIHPINSDLVIMARLAGIEYAQLIGEIVESA 323


>gi|42794963|gb|AAS45837.1| putative D-alanine:D-alanine ligase [Clostridium difficile]
 gi|42794969|gb|AAS45840.1| putative D-alanine:D-alanine ligase [Clostridium difficile]
          Length = 141

 Score = 82.8 bits (203), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 46/134 (34%), Positives = 77/134 (57%), Gaps = 10/134 (7%)

Query: 124 ISPPYVIKPLKGGSSLGI--IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
           ++ P  IKP++ GSS GI  I  K++  + +DL    ++ H ++++IE+ +DG E+ C V
Sbjct: 13  LTYPLFIKPVRAGSSFGISKIYKKEELQVAVDL----AFEHDNEVIIEENIDGFEVGCAV 68

Query: 182 MGDASL---DVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           +G+  L    V EI + K  F+ Y  KY+  +S   +PA+I LD  K +Q  A + ++ +
Sbjct: 69  LGNDDLLVGRVDEIELSKG-FFDYTEKYTLKSSKIHMPARIDLDCEKRIQETAKIIYRTL 127

Query: 239 GCRGISRSDFLFDP 252
           GC G +R D    P
Sbjct: 128 GCSGFARVDMFLTP 141


>gi|311351458|gb|ADP92914.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351460|gb|ADP92915.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351470|gb|ADP92920.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351480|gb|ADP92925.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351488|gb|ADP92929.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351490|gb|ADP92930.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351498|gb|ADP92934.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351568|gb|ADP92969.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351574|gb|ADP92972.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351586|gb|ADP92978.1| D-alanine-D-alanine ligase [Clostridium perfringens]
          Length = 196

 Score = 82.8 bits (203), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 104/187 (55%), Gaps = 7/187 (3%)

Query: 66  GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF-TMDSQHL- 123
           G VQ++L+ L IP++  G L+SA+ MDK  +K++++   V     ++V+    +D + + 
Sbjct: 1   GTVQSVLKTLGIPFSGCGPLSSAICMDKDMTKRILAFGNVRTARWVMVSSVDEIDYEKIE 60

Query: 124 -ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            +  P  IKP  GGSS+   +++  +++   +L++  ++   +++IE+Y+ G E+TC ++
Sbjct: 61  NLGYPVFIKPNNGGSSVATTLVESKEAVEDAVLEALKYDT--EVMIEEYIKGDEITCPII 118

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
               L V  I  PK  F+    KY    +   +  K+  D++KEV+++A   ++ + C  
Sbjct: 119 DGKMLPVLAIK-PKGKFFDIASKYEDGGADEFI-VKLNEDLHKEVEKMALETYKLLKCDV 176

Query: 243 ISRSDFL 249
            +R D L
Sbjct: 177 YARVDML 183


>gi|311351414|gb|ADP92892.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351416|gb|ADP92893.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351420|gb|ADP92895.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351428|gb|ADP92899.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351432|gb|ADP92901.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351434|gb|ADP92902.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351438|gb|ADP92904.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351442|gb|ADP92906.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351444|gb|ADP92907.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351448|gb|ADP92909.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351450|gb|ADP92910.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351454|gb|ADP92912.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351456|gb|ADP92913.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351464|gb|ADP92917.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351466|gb|ADP92918.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351468|gb|ADP92919.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351472|gb|ADP92921.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351474|gb|ADP92922.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351476|gb|ADP92923.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351478|gb|ADP92924.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351482|gb|ADP92926.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351484|gb|ADP92927.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351486|gb|ADP92928.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351492|gb|ADP92931.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351496|gb|ADP92933.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351504|gb|ADP92937.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351506|gb|ADP92938.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351508|gb|ADP92939.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351510|gb|ADP92940.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351512|gb|ADP92941.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351516|gb|ADP92943.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351520|gb|ADP92945.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351522|gb|ADP92946.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351524|gb|ADP92947.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351526|gb|ADP92948.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351528|gb|ADP92949.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351530|gb|ADP92950.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351532|gb|ADP92951.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351534|gb|ADP92952.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351536|gb|ADP92953.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351538|gb|ADP92954.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351540|gb|ADP92955.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351542|gb|ADP92956.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351546|gb|ADP92958.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351548|gb|ADP92959.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351550|gb|ADP92960.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351552|gb|ADP92961.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351554|gb|ADP92962.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351556|gb|ADP92963.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351558|gb|ADP92964.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351560|gb|ADP92965.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351562|gb|ADP92966.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351564|gb|ADP92967.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351566|gb|ADP92968.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351570|gb|ADP92970.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351572|gb|ADP92971.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351576|gb|ADP92973.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351580|gb|ADP92975.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351582|gb|ADP92976.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351584|gb|ADP92977.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351588|gb|ADP92979.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351590|gb|ADP92980.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351594|gb|ADP92982.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351596|gb|ADP92983.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351598|gb|ADP92984.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351604|gb|ADP92987.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351606|gb|ADP92988.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351608|gb|ADP92989.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351614|gb|ADP92992.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351616|gb|ADP92993.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351618|gb|ADP92994.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351620|gb|ADP92995.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351624|gb|ADP92997.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351634|gb|ADP93002.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351636|gb|ADP93003.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351652|gb|ADP93011.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351654|gb|ADP93012.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351656|gb|ADP93013.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351658|gb|ADP93014.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351660|gb|ADP93015.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351662|gb|ADP93016.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351664|gb|ADP93017.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351666|gb|ADP93018.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351668|gb|ADP93019.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351670|gb|ADP93020.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351672|gb|ADP93021.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351674|gb|ADP93022.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351676|gb|ADP93023.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351678|gb|ADP93024.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351680|gb|ADP93025.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351682|gb|ADP93026.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351686|gb|ADP93028.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351690|gb|ADP93030.1| D-alanine-D-alanine ligase [Clostridium perfringens]
          Length = 196

 Score = 82.8 bits (203), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 104/187 (55%), Gaps = 7/187 (3%)

Query: 66  GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF-TMDSQHL- 123
           G VQ++L+ L IP++  G L+SA+ MDK  +K++++   V     ++V+    +D + + 
Sbjct: 1   GTVQSVLKTLGIPFSGCGPLSSAICMDKDMTKRILAFGNVRTARWVMVSSVDEIDYEKIE 60

Query: 124 -ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            +  P  IKP  GGSS+   +++  +++   +L++  ++   +++IE+Y+ G E+TC ++
Sbjct: 61  NLGYPVFIKPNNGGSSVATTLVESKEAVKDAVLEALKYDT--EVMIEEYIKGDEITCPII 118

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
               L V  I  PK  F+    KY    +   +  K+  D++KEV+++A   ++ + C  
Sbjct: 119 DGKMLPVLAIK-PKGKFFDIASKYEDGGADEFI-VKLNEDLHKEVEKMALETYKLLKCDV 176

Query: 243 ISRSDFL 249
            +R D L
Sbjct: 177 YARVDML 183


>gi|311351418|gb|ADP92894.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351426|gb|ADP92898.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351452|gb|ADP92911.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351462|gb|ADP92916.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351494|gb|ADP92932.1| D-alanine-D-alanine ligase [Clostridium perfringens]
          Length = 196

 Score = 82.4 bits (202), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 104/187 (55%), Gaps = 7/187 (3%)

Query: 66  GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF-TMDSQHL- 123
           G VQ++L+ L IP++  G L+SA+ MDK  +K++++   V     ++V+    +D + + 
Sbjct: 1   GTVQSVLKTLGIPFSGCGPLSSAICMDKDMTKRILAFGNVRTARWVMVSSVDEIDYEKIE 60

Query: 124 -ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            +  P  IKP  GGSS+   +++  +++   +L++  ++   +++IE+Y+ G E+TC ++
Sbjct: 61  NLGYPVFIKPNNGGSSVATTLVESKEAVKDAVLEALKYDT--EVMIEEYIKGDEITCPII 118

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
               L V  I  PK  F+    KY    +   +  K+  D++KEV+++A   ++ + C  
Sbjct: 119 EGKMLPVLAIK-PKGKFFDIASKYEDGGADEFI-VKLNEDLHKEVEKMALETYKLLKCDV 176

Query: 243 ISRSDFL 249
            +R D L
Sbjct: 177 YARVDML 183


>gi|311351500|gb|ADP92935.1| D-alanine-D-alanine ligase [Clostridium perfringens]
          Length = 196

 Score = 82.4 bits (202), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 104/187 (55%), Gaps = 7/187 (3%)

Query: 66  GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF-TMDSQHL- 123
           G VQ++L+ L IP++  G L+SA+ MDK  +K++++   V     ++V+    +D + + 
Sbjct: 1   GTVQSVLKTLGIPFSGCGPLSSAICMDKDMTKRILAFGNVRTARWVMVSSVDEIDYEKIE 60

Query: 124 -ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            +  P  IKP  GGSS+   +++  +++   +L++  ++   +++IE+Y+ G E+TC ++
Sbjct: 61  NLCYPVFIKPNNGGSSVATTLVESKEAVKDAVLEALKYDT--EVMIEEYIKGDEITCPII 118

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
               L V  I  PK  F+    KY    +   +  K+  D++KEV+++A   ++ + C  
Sbjct: 119 DGKMLPVLAIK-PKGKFFDIASKYEDGGADEFI-VKLNEDLHKEVEKMALETYKLLKCDV 176

Query: 243 ISRSDFL 249
            +R D L
Sbjct: 177 YARVDML 183


>gi|269927452|gb|ACZ53029.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927456|gb|ACZ53031.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927460|gb|ACZ53033.1| D-alanine-D-alanine ligase [Lactobacillus reuteri ATCC 53608]
 gi|269927462|gb|ACZ53034.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927464|gb|ACZ53035.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927470|gb|ACZ53038.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927472|gb|ACZ53039.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927474|gb|ACZ53040.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927480|gb|ACZ53043.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927482|gb|ACZ53044.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927488|gb|ACZ53047.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927490|gb|ACZ53048.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927492|gb|ACZ53049.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927494|gb|ACZ53050.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927498|gb|ACZ53052.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927500|gb|ACZ53053.1| D-alanine-D-alanine ligase [Lactobacillus reuteri ATCC 53608]
 gi|269927502|gb|ACZ53054.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927504|gb|ACZ53055.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927516|gb|ACZ53061.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927518|gb|ACZ53062.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927520|gb|ACZ53063.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927528|gb|ACZ53067.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927530|gb|ACZ53068.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927536|gb|ACZ53071.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927538|gb|ACZ53072.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927542|gb|ACZ53074.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927544|gb|ACZ53075.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927552|gb|ACZ53079.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927556|gb|ACZ53081.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927558|gb|ACZ53082.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927560|gb|ACZ53083.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927564|gb|ACZ53085.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927568|gb|ACZ53087.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927570|gb|ACZ53088.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927574|gb|ACZ53090.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927576|gb|ACZ53091.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927580|gb|ACZ53093.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927584|gb|ACZ53095.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927594|gb|ACZ53100.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927596|gb|ACZ53101.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927598|gb|ACZ53102.1| D-alanine-D-alanine ligase [Lactobacillus reuteri lpuph]
 gi|269927600|gb|ACZ53103.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927604|gb|ACZ53105.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927618|gb|ACZ53112.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927630|gb|ACZ53118.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927632|gb|ACZ53119.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927634|gb|ACZ53120.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927640|gb|ACZ53123.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927642|gb|ACZ53124.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927644|gb|ACZ53125.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927652|gb|ACZ53129.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927654|gb|ACZ53130.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927656|gb|ACZ53131.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927658|gb|ACZ53132.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927662|gb|ACZ53134.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927674|gb|ACZ53140.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927676|gb|ACZ53141.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927682|gb|ACZ53144.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
          Length = 210

 Score = 82.4 bits (202), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 64/213 (30%), Positives = 112/213 (52%), Gaps = 17/213 (7%)

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFTMDS---QHLISPPYVIKPLKGG 136
            I ASA+S DK  +K+++S  G+   P ++V   NR        +  +     +KP K G
Sbjct: 1   NIAASAMSFDKDLTKKIISQAGIRNTPYVVVTPENRADYSWGRIEEKLGNLTFVKPAKQG 60

Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDA---SLDVTEI 192
           SS+GI  +   +     L  +  +++  ++L+EQ + +  E+   ++G+    +  +  +
Sbjct: 61  SSVGIHRVTNAEEYEKALDDAFKYDY--KILVEQGIANPQEIEISILGNEHPIASKLGAV 118

Query: 193 AVPKSD-FYSYELKYSSLNST-HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
            VPK D FY YE K+   +     LP K+P  +  E+  +A  A++A+G +G++R DFL 
Sbjct: 119 RVPKDDPFYDYENKFVDASGVVFELPVKLPQYLVDEITDMALKAYKALGMKGMARIDFLV 178

Query: 251 DPLSRKVFWL-EINVQPGMTPVSIFPEMAAYAG 282
           D  S  V +L E N  PG T +S++P+M   +G
Sbjct: 179 D--SNNVPYLGEPNTLPGFTNISLYPQMWEVSG 209


>gi|624691|gb|AAA60988.1| D-alanine-D-alanine ligase-related enzyme [Enterococcus
           casseliflavus]
          Length = 200

 Score = 82.0 bits (201), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 54/192 (28%), Positives = 92/192 (47%), Gaps = 15/192 (7%)

Query: 71  ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--SILVNRFTMDSQHLISP-- 126
            LE + +PY  +G+L SA  MDK+ +K ++ + G+P  P   +L N +  + + +     
Sbjct: 1   FLETIGMPYVGAGVLTSACGMDKIMTKYILQAAGIPQVPYVPVLKNAWKENPKKIFDQCE 60

Query: 127 -----PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
                P  +KP   GSS+GI   +  Q +   L    ++ +  + ++EQ ++  E+   V
Sbjct: 61  GSLLYPMFVKPANMGSSVGISKAENRQELQNAL--QEAYRYDTRAIVEQGIEAREIEVAV 118

Query: 182 MGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           +G+  +  T   EI V    FY Y  KY        +PA+IP +   + Q  A  A+  +
Sbjct: 119 LGNEDVRTTMPGEI-VKDVAFYDYNSKYIDNRIEMQIPAQIPEETQAKAQEFAKKAYTML 177

Query: 239 GCRGISRSDFLF 250
           G  G+SR DF  
Sbjct: 178 GGSGLSRCDFFL 189


>gi|289804450|ref|ZP_06535079.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Typhi str. AG3]
          Length = 244

 Score = 82.0 bits (201), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 87/163 (53%), Gaps = 10/163 (6%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+ F ++HG  GEDG +Q +L +  +P+  S +L+SA  MDK  +K+++   G+ + P I
Sbjct: 84  DVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLSSAACMDKDVAKRLLRDAGLNIAPFI 143

Query: 112 LVNRFTMDS------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
            + R    +      +  +  P  +KP   GSS+G+  +  +      +  +  ++H  +
Sbjct: 144 TLTRTNRHAFSFAEVESRLGLPLFVKPANQGSSVGVSKVANEAQYQQAVALAFEFDH--K 201

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIA--VPKSDFYSYELKY 206
           +++EQ + G E+ C V+G+ +   +     V  S+FY+Y+ KY
Sbjct: 202 VVVEQGIKGREIECAVLGNDNPQASTCGEIVLNSEFYAYDTKY 244


>gi|1814252|gb|AAB41856.1| D-Alanine:D-Alanine ligase [Streptococcus salivarius]
          Length = 197

 Score = 82.0 bits (201), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 97/187 (51%), Gaps = 10/187 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP-VCPSILVNRFTMDSQ-----HLIS 125
           LE L++PY  + +L+S+++MDK+ +K ++   GVP V  ++ +    +++        ++
Sbjct: 2   LETLKLPYVGTNVLSSSVAMDKIMTKHILEVAGVPQVAYTVFIEGEDLEAAVAETLEKLT 61

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            P  +KP   GSS+GI   K +    L      +  +  ++LIEQ V   E+  G++G+ 
Sbjct: 62  FPVFVKPANMGSSVGIS--KAENEAELRAAIDLALKYDSRILIEQGVVAREIEVGILGNT 119

Query: 186 SLDVTEIA--VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           ++  T     V    FY Y+ KY     T  +PA +P ++  +++  A  A +A+G  G+
Sbjct: 120 TVKTTNPGEVVKDVAFYDYQAKYIDNKITMDIPAHVPAEVMTQMRVYAAKAFRALGGCGL 179

Query: 244 SRSDFLF 250
           +R DF  
Sbjct: 180 ARCDFFL 186


>gi|1255017|gb|AAB17899.1| D-alanine:D-alanine ligase [Enterococcus dispar]
          Length = 200

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 54/191 (28%), Positives = 94/191 (49%), Gaps = 15/191 (7%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--SILVNRFTMDSQHLISP--- 126
           LE +++PY  +G+L SA  MDK+ +K ++ + G+P  P   +L N +  + + +      
Sbjct: 2   LETIDMPYIGAGVLTSACGMDKIMTKYILQAAGIPQVPYVPVLKNLWKENPKQIFEQCEG 61

Query: 127 ----PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
               P  +KP   GSS+GI   K +    L      ++ +  + ++EQ ++  E+   ++
Sbjct: 62  TLLYPMFVKPANMGSSVGI--SKAENREELQNALQEAYKYDTRAIVEQGIERGEIEVAIL 119

Query: 183 GDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
           G+  +  T   EI V    FY Y  KY        +PA+IP D+ ++ Q  A  A+  +G
Sbjct: 120 GNEDVRTTLPGEI-VKDVAFYDYNSKYIDNQIIMQIPAEIPEDVQQKAQDFAKKAYVMLG 178

Query: 240 CRGISRSDFLF 250
             G+SR DF  
Sbjct: 179 GSGLSRCDFFL 189


>gi|260461867|ref|ZP_05810113.1| D-alanine--D-alanine ligase [Mesorhizobium opportunistum WSM2075]
 gi|319785391|ref|YP_004144867.1| D-alanine--D-alanine ligase [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|259032508|gb|EEW33773.1| D-alanine--D-alanine ligase [Mesorhizobium opportunistum WSM2075]
 gi|317171279|gb|ADV14817.1| D-alanine--D-alanine ligase [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 340

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 73/285 (25%), Positives = 129/285 (45%), Gaps = 23/285 (8%)

Query: 20  KACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------DLAFNVLHGNFGE--DGLVQ 69
           ++  +AL++ G +    D D+ +   L    P         + FN+  G+ GE  +  V 
Sbjct: 32  ESVVAALQEGGHETLICDGDKGLLATLERFMPPDRQSRPSGIVFNLAWGSQGERPEAGVP 91

Query: 70  AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYV 129
           A+LE+  +P T  G L   L+ DK+  K+++   GVP  P+  V R   ++   +  P V
Sbjct: 92  AMLEMAGVPCTGPGPLGYGLAFDKVIIKRLIRDRGVPT-PNFRVMRLGTETTGDLRFPLV 150

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSS---WNHGDQLLIEQYVDGIELTCGVMGDAS 186
           +KP    +S G+ +  +    P  L Q+       +    L+E+Y+DG E+T  ++G+  
Sbjct: 151 VKPRYECASFGLQLAHE----PAQLRQAVEVIVTLYAQDALVEEYIDGREITVALLGNRE 206

Query: 187 LDVTEIAVPKSDFYSYELK--YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244
           L+V  + + + DF   E +          + P +I   +   +Q ++        CR  +
Sbjct: 207 LEV--LPLVEYDFRDREKRCLTREAKQRRICPGQIGSRLATVLQDISVATFLECQCRDYA 264

Query: 245 RSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           R D   D  S + F LEIN  P +   + +   A  AGY+F  L+
Sbjct: 265 RVDLRID-RSGQAFVLEINNMPSLRMRASYVLAARTAGYTFSSLV 308


>gi|330884029|gb|EGH18178.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. glycinea
          str. race 4]
          Length = 91

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 48/86 (55%), Positives = 54/86 (62%)

Query: 1  MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
          +AVL GG S+ER VSL+SG A   AL DAG     IDV       L   K D AF VLHG
Sbjct: 6  VAVLFGGKSAERAVSLNSGNAVLKALLDAGVDAFGIDVGDDFLQRLVSEKIDRAFIVLHG 65

Query: 61 NFGEDGLVQAILELLEIPYTHSGILA 86
            GEDG +Q +LE LEIPYT SG+LA
Sbjct: 66 RGGEDGTMQGLLECLEIPYTGSGVLA 91


>gi|195940920|ref|ZP_03086302.1| D-alanyl-alanine synthetase A [Escherichia coli O157:H7 str.
           EC4024]
          Length = 147

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 44/131 (33%), Positives = 75/131 (57%), Gaps = 4/131 (3%)

Query: 167 LIEQYVDGIELTCGVMGDASLDVTEIA--VPKSDFYSYELKY-SSLNSTHVLPAKIPLDI 223
           ++EQ ++G E+ C V+G+     +     V  SDFYSY+ KY     +  V+PA +  D+
Sbjct: 1   MVEQGINGREIECAVLGNDFPQASTCGEVVLNSDFYSYDTKYIDDKGAQVVVPAALDPDV 60

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283
              ++ +A  A QA+GC G++R D    P   +V   EIN  PG T +S++P++   +G 
Sbjct: 61  NDRIRAIAIEAWQALGCSGMARVDVFLTP-DNEVVINEINTLPGFTNISMYPKLWQASGI 119

Query: 284 SFRELLLWMVE 294
           S++EL+  ++E
Sbjct: 120 SYQELITRLIE 130


>gi|109947256|ref|YP_664484.1| D-alanyl-alanine synthetase A [Helicobacter acinonychis str.
           Sheeba]
 gi|123066260|sp|Q17XZ1|DDL_HELAH RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|109714477|emb|CAJ99485.1| D-alanine-D-alanine ligase [Helicobacter acinonychis str. Sheeba]
          Length = 350

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 79/323 (24%), Positives = 136/323 (42%), Gaps = 49/323 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDA----------------------GFKVSQIDV 38
             VL GG S E E+S+ S  A    L+D                           +QI  
Sbjct: 4   FCVLFGGASFEHEISIVSAIALKEVLKDQIKYFIFLDENHHFYLIEASNMHSKYFAQIKE 63

Query: 39  DRSVGLVLAH-------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
            +   L+L H             ++  L  N++HG  GEDG + ++LE   I +  S + 
Sbjct: 64  KKLPPLMLTHNGLLKNSFLGAKTIELPLMINLVHGGDGEDGKLASLLEFYRIAFIGSRVE 123

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVN-RFTMDSQHLISP----PYVIKPLKGGSSLG 140
           AS LS +K  +K    + GV     IL+N +   ++  LI P    P+++KP   GSSLG
Sbjct: 124 ASVLSYNKHLTKLYAKNLGVKTLDCILLNEKNRANALDLIKPSFNFPFIVKPNNAGSSLG 183

Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE----LTCGVMGDASLDVTEIAVPK 196
           + V+K+++ +   L    ++ +  ++LIE ++  ++      C +  D      E    K
Sbjct: 184 VSVVKEEKELAYAL--DGAFEYSKEVLIEPFIQRVKEYNLAGCKIKEDFCFSYVE-EPNK 240

Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256
            +F  ++ KY   + T    A IP  + ++++      +  +    I R DF    +  +
Sbjct: 241 QEFLDFKQKYLDFSRTKAPKANIPNALEEQLRENFKKLYNDLFDGAIIRCDFFV--IDNE 298

Query: 257 VFWLEINVQPGMTPVSIFPEMAA 279
           V+  EIN  PG     +F +   
Sbjct: 299 VYLNEINPIPGSLANYLFDDFKT 321


>gi|269927458|gb|ACZ53032.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927508|gb|ACZ53057.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927510|gb|ACZ53058.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927512|gb|ACZ53059.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927534|gb|ACZ53070.1| D-alanine-D-alanine ligase [Lactobacillus reuteri DSM 20016]
 gi|269927540|gb|ACZ53073.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927590|gb|ACZ53098.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927592|gb|ACZ53099.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927612|gb|ACZ53109.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927622|gb|ACZ53114.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927628|gb|ACZ53117.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927666|gb|ACZ53136.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
          Length = 210

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 65/216 (30%), Positives = 114/216 (52%), Gaps = 23/216 (10%)

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYV---------IKPL 133
            I ASA+S DK  +K+++S  G+   P ++V   T ++Q   S   +         +KP 
Sbjct: 1   NIAASAMSFDKDLTKKIISQAGIRNTPYVVV---TPENQADYSWGRIEEKLGNLTFVKPA 57

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDA---SLDV 189
           K GSS+GI  +   +     L  +  +++  ++L+EQ + +  E+   ++G+    +  +
Sbjct: 58  KQGSSVGIHRVTNAEEYEKALDDAFKYDY--KILVEQGIANPQEIEISILGNEHPIASKL 115

Query: 190 TEIAVPKSD-FYSYELKYSSLNST-HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
             + VPK D FY YE K+   +     LP K+P  +  E+  +A  A++A+G +G++R D
Sbjct: 116 GAVRVPKDDPFYDYENKFVDASGVVFELPVKLPQYLVDEITDMALKAYKALGMKGMARID 175

Query: 248 FLFDPLSRKVFWL-EINVQPGMTPVSIFPEMAAYAG 282
           FL D  S  V +L E N  PG T +S++P+M   +G
Sbjct: 176 FLVD--SNNVPYLGEPNTLPGFTNISLYPQMWEVSG 209


>gi|269927602|gb|ACZ53104.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927620|gb|ACZ53113.1| D-alanine-D-alanine ligase [Lactobacillus reuteri mlc3]
          Length = 210

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 63/213 (29%), Positives = 112/213 (52%), Gaps = 17/213 (7%)

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFTMDS---QHLISPPYVIKPLKGG 136
            I ASA++ DK  +K+++S  G+   P ++V   NR        +  +     +KP K G
Sbjct: 1   NIAASAMAFDKDLTKKIISQAGIRNTPYVVVTPENRADYSWGRIEEKLGNLTFVKPAKQG 60

Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDA---SLDVTEI 192
           SS+GI  +   +     L  +  +++  ++L+EQ + +  E+   ++G+    +  +  +
Sbjct: 61  SSVGIHRVTNAEEYEKALDDAFKYDY--KILVEQGIANPQEIEISILGNEHPIASKLGAV 118

Query: 193 AVPKSD-FYSYELKYSSLNST-HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
            VPK D FY YE K+   +     LP K+P  +  E+  +A  A++A+G +G++R DFL 
Sbjct: 119 RVPKDDPFYDYENKFVDASGVVFELPVKLPQYLVDEITDMALKAYKALGMKGMARIDFLV 178

Query: 251 DPLSRKVFWL-EINVQPGMTPVSIFPEMAAYAG 282
           D  S  V +L E N  PG T +S++P+M   +G
Sbjct: 179 D--SNNVPYLGEPNTLPGFTNISLYPQMWEVSG 209


>gi|301511265|ref|ZP_07236502.1| D-alanine--D-alanine ligase [Acinetobacter baumannii AB058]
 gi|301597563|ref|ZP_07242571.1| D-alanine--D-alanine ligase [Acinetobacter baumannii AB059]
          Length = 170

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 82/163 (50%), Gaps = 6/163 (3%)

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           IKP+  GSS+G+  ++K +     + +++   H   ++ E+++ G E T   +    L V
Sbjct: 1   IKPVHEGSSVGMSKVEKAEDFAAAIEKAT--QHDAVVMAEKWITGREFTISFLNGQPLPV 58

Query: 190 TEIAVPKS-DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
             +  P    FY YE KY   +  + +P  +     K++Q L   A QA+G  G  R D 
Sbjct: 59  IRLQPPADVAFYDYEAKYQRNDVEYGIPCGLSETEEKKLQALCLRAFQAVGAEGWGRIDA 118

Query: 249 LFDPLSRKVFWL-EINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           + D   +  FWL E+N  PGMT  S+ P+ A   GYSF EL +
Sbjct: 119 MQD--EQGNFWLLEVNTVPGMTSHSLVPKAAKAVGYSFDELCV 159


>gi|311351436|gb|ADP92903.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351440|gb|ADP92905.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351446|gb|ADP92908.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351502|gb|ADP92936.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351514|gb|ADP92942.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351518|gb|ADP92944.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351544|gb|ADP92957.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351578|gb|ADP92974.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351650|gb|ADP93010.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351688|gb|ADP93029.1| D-alanine-D-alanine ligase [Clostridium perfringens]
          Length = 196

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 51/187 (27%), Positives = 104/187 (55%), Gaps = 7/187 (3%)

Query: 66  GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF-TMDSQHL- 123
           G VQ++L+ L IP++  G L+SA+ MDK  +K++++   V     ++V+    +D + + 
Sbjct: 1   GTVQSVLKTLGIPFSGCGPLSSAICMDKDMTKRILAFGNVRTARWVMVSSVDEIDYEKIE 60

Query: 124 -ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            +  P  IKP  GGSS+   +++  +++   +L++  ++   +++IE+Y+ G E+TC ++
Sbjct: 61  NLGYPVFIKPNNGGSSVATTLVESKEAVKDAVLEALKYDT--EVMIEEYIKGDEITCPII 118

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
               L V  I  PK  F+    KY    +   +  ++  D++KEV+++A   ++ + C  
Sbjct: 119 DGKMLPVLAIK-PKGKFFDIASKYEDGGADEFI-VELNEDLHKEVEKMALETYKLLKCDV 176

Query: 243 ISRSDFL 249
            +R D L
Sbjct: 177 YARVDML 183


>gi|311351424|gb|ADP92897.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351430|gb|ADP92900.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351592|gb|ADP92981.1| D-alanine-D-alanine ligase [Clostridium perfringens]
          Length = 196

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 51/187 (27%), Positives = 104/187 (55%), Gaps = 7/187 (3%)

Query: 66  GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF-TMDSQHL- 123
           G VQ++L+ L IP++  G L+SA+ MDK  +K++++   V     ++V+    +D + + 
Sbjct: 1   GTVQSVLKTLGIPFSGCGPLSSAICMDKDMTKRILAFGNVRTARWVMVSSVDEIDYEKIE 60

Query: 124 -ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            +  P  IKP  GGSS+   +++  +++   +L++  ++   +++IE+Y+ G E+TC ++
Sbjct: 61  NLGYPVFIKPNNGGSSVATTLVESKEAVKDAVLEALKYDT--EVMIEEYIKGDEITCPII 118

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
               L V  I  PK  F+    KY    +   +  K+  +++KEV+++A   ++ + C  
Sbjct: 119 DGKMLPVLAIK-PKGKFFDIASKYEDGGADEFI-VKLNENLHKEVEKMALETYKLLKCDV 176

Query: 243 ISRSDFL 249
            +R D L
Sbjct: 177 YARVDML 183


>gi|255322239|ref|ZP_05363385.1| D-alanine--D-alanine ligase [Campylobacter showae RM3277]
 gi|255300612|gb|EET79883.1| D-alanine--D-alanine ligase [Campylobacter showae RM3277]
          Length = 344

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 67/235 (28%), Positives = 115/235 (48%), Gaps = 13/235 (5%)

Query: 48  HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV 107
            ++ D+  N++HG  GEDG + A+LE   + Y    + ASALS +K  +K +    GV  
Sbjct: 84  KIEADVFINLVHGMDGEDGKIAALLEFYGLSYIGPRVEASALSYNKELTKLLAQKAGVKT 143

Query: 108 CPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL 167
               +V+R    S  L   P ++KPL+ GSS+G+ VIK    +   L    ++    ++L
Sbjct: 144 LNYEVVSREKAPSLPL---PVILKPLRLGSSIGVSVIKDAGELEYGL--DVAYEFDKEIL 198

Query: 168 IEQYVDGIELT--CGVMGDASLDVTEIAVP-KSDFYSYELKYSSL-NSTHVLPAKIPLDI 223
           +E +++G++     G   D  +  + I  P K +F  YE KY S  N +    A I  ++
Sbjct: 199 VEPFIEGVKEYNLAGCKADGEIKFSIIEEPKKKEFLDYEQKYMSFSNESRAREANISAEL 258

Query: 224 YKEVQRLAFLAHQAIGCRG-ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
             ++++ +F      G  G + R DF    ++ +V+  EIN  PG     +F + 
Sbjct: 259 AAKLKQ-SFERIYDCGFNGALIRCDFF--EVNGEVYLNEINPNPGSMANYLFDDF 310


>gi|624693|gb|AAA60989.1| D-alanine-D-alanine ligase-related enzyme [Enterococcus
           casseliflavus]
          Length = 200

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 54/192 (28%), Positives = 91/192 (47%), Gaps = 15/192 (7%)

Query: 71  ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--SILVNRFTMDSQHLISP-- 126
            LE + +PY  +G+L SA  MDK+ +K ++ + G+P  P   +L N +  + + +     
Sbjct: 1   FLETIGMPYVGAGVLTSACGMDKIMTKYILQAAGIPQVPYVPVLKNAWKENPKKIFDQCE 60

Query: 127 -----PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
                P  +KP   GSS+GI   K +    L      ++ +  + ++EQ ++  E+   V
Sbjct: 61  GSLLYPMFVKPANMGSSVGI--SKAENREELQNALQEAYRYDTRAIVEQGIEAREIEVAV 118

Query: 182 MGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           +G+  +  T   EI V    FY Y  KY        +PA+IP +   + Q  A  A+  +
Sbjct: 119 LGNEDVRTTMPGEI-VKDVAFYDYNSKYIDNRIEMQIPAQIPEETQAKAQEFAKKAYTML 177

Query: 239 GCRGISRSDFLF 250
           G  G+SR DF  
Sbjct: 178 GGSGLSRCDFFL 189


>gi|186685649|ref|YP_001868845.1| D-alanine--D-alanine ligase domain-containing protein [Nostoc
           punctiforme PCC 73102]
 gi|186468101|gb|ACC83902.1| D-alanine--D-alanine ligase domain protein [Nostoc punctiforme PCC
           73102]
          Length = 348

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 69/250 (27%), Positives = 123/250 (49%), Gaps = 33/250 (13%)

Query: 69  QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPY 128
           +A+ +LL+IPY  +     A++  K R+K +V + GV V    L+ +  + +   I+PP 
Sbjct: 100 RALFDLLKIPYIGNTPDIMAIAAHKARAKAIVEAAGVKVPRGELLRQGDIPT---ITPPA 156

Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVM-GDAS 186
           V+KP+   +SLG++++K       D     ++ +  ++++E +++ G E+ CG++  D  
Sbjct: 157 VVKPVSSDNSLGVVLVK--DVTEYDAALKKAFEYASEVIVEAFIELGREVRCGIIVKDGE 214

Query: 187 LDVTEIAVPKSDF-----------YSYELKYSSLNSTHVLPAKI--------PLD-IYKE 226
           L    I +P  ++           Y+ +L+ +     H L AK         P D I ++
Sbjct: 215 L----IGLPLEEYLVDPHDKPIRNYADKLQQTDDGDLH-LTAKDNIKAWILDPNDPITQK 269

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           VQ++A   HQA+GCR  S  DF  DP  +  F LE  +     P S+   MA  AG    
Sbjct: 270 VQQVAKRCHQALGCRHYSLFDFRIDPKGQPWF-LEAGLYCSFAPKSVISSMAKAAGIPLN 328

Query: 287 ELLLWMVEDA 296
           +LL+  + + 
Sbjct: 329 DLLITAINET 338


>gi|758373|gb|AAA87681.1| putative D-alanine:D-alanine ligase [Lactobacillus leichmannii]
          Length = 206

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 55/208 (26%), Positives = 104/208 (50%), Gaps = 18/208 (8%)

Query: 71  ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD----------- 119
           +  L++ P+    +LA+ ++MDK  +K +    GVPV   + + R+  +           
Sbjct: 1   LFRLIDKPFVGVDVLAARVTMDKEFTKILAQRAGVPVAKWVSIKRYEYEDAKNQKLSYDW 60

Query: 120 -SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            S  L +    +KP   GSS+GI  +  D +    L +  ++ + D++L+E+ + G E+ 
Sbjct: 61  VSGQLGTTNLFVKPSNQGSSVGITHVTDDSNYAEALAE--AFKYDDKVLVEEGIVGTEVE 118

Query: 179 CGVMGD---ASLDVTEIAVPKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLA 234
             V+G+       V  I    + +YSYE KYS+ ++T + +PA+IP +  ++VQ  A   
Sbjct: 119 TAVLGNDHPVVSGVGRIINADNTWYSYENKYSTESTTTLQIPAQIPAETAEKVQENALKI 178

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEI 262
           +Q   C G++R D +      +V + E+
Sbjct: 179 YQITECSGMARIDSMLRESDGEVIFNEL 206


>gi|311351422|gb|ADP92896.1| D-alanine-D-alanine ligase [Clostridium perfringens]
          Length = 196

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 103/187 (55%), Gaps = 7/187 (3%)

Query: 66  GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF-TMDSQHL- 123
           G VQ++L+ L IP++  G L+SA+ MDK  +K++++   V      +V+    +D + + 
Sbjct: 1   GTVQSVLKTLGIPFSGCGPLSSAICMDKDMTKRILAFGNVRTARWEMVSSVDEIDYEKIE 60

Query: 124 -ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            +  P  IKP  GGSS+   +++  +++   +L++  ++   +++IE+Y+ G E+TC ++
Sbjct: 61  NLGYPVFIKPNNGGSSVATTLVESKEAVKDAVLEALKYDT--EVMIEEYIKGDEITCPII 118

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
               L V  I  PK  F+    KY    +   +  K+  D++KEV+++A   ++ + C  
Sbjct: 119 DGKMLPVLAIK-PKGKFFDIASKYEDGGADEFI-VKLNEDLHKEVEKMALETYKLLKCDV 176

Query: 243 ISRSDFL 249
            +R D L
Sbjct: 177 YARVDML 183


>gi|297583027|ref|YP_003698807.1| D-alanine--D-alanine ligase domain-containing protein [Bacillus
           selenitireducens MLS10]
 gi|297141484|gb|ADH98241.1| D-alanine--D-alanine ligase domain protein [Bacillus
           selenitireducens MLS10]
          Length = 714

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 72/311 (23%), Positives = 143/311 (45%), Gaps = 26/311 (8%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQIDVDRSV--------GLVLAHLKPDLAFNVL 58
           G  +  +  L + K     L+  G +V   + D+++          V++  +P L FN+ 
Sbjct: 19  GTPNREKYGLETIKKIKDGLQSLGHQVKTFEGDKNIIAKLEEFMPSVISGERPGLVFNLS 78

Query: 59  HGNFGEDGL--VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116
           +G  G+     V  ILE++ +PY  SG    AL++DK+ +K ++   G+P      + + 
Sbjct: 79  YGIQGKGRYMHVPGILEMIGVPYVGSGPETHALALDKVVTKMILLQKGLPTPRFAELEKP 138

Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
                  ++ P ++KP     S G+ ++  ++ +  D +++         L+E+Y++G E
Sbjct: 139 DSPITAELTYPLIVKPKNEAVSFGLKIVHNEEEL-RDGVKTIYDTFQSPTLVEEYIEGRE 197

Query: 177 LTCGVMGDASLDVTEIAVPKSDF--------YSYELKYSSLNS--THVLPAKIPLDIYKE 226
           +  G++G+  ++    A+P  +         ++YE K S   S    V PA +  ++ ++
Sbjct: 198 VNVGLLGNNPVE----ALPPVELVFGDGPQIFTYEDKTSGQGSRVQKVCPAPLDDELMEK 253

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           V++LA     A+ C   +R DF  D  +   + LE+N    +     F   A   G S+ 
Sbjct: 254 VKQLAIDTFHALNCFDTARVDFRIDK-NGNPYILEVNSMASLGADGSFVYAAQTLGMSYA 312

Query: 287 ELLLWMVEDAS 297
           E++  +VE  S
Sbjct: 313 EIMNRIVEVTS 323


>gi|224372975|ref|YP_002607347.1| D-alanyl-alanine synthetase A [Nautilia profundicola AmH]
 gi|223589885|gb|ACM93621.1| D-alanine--D-alanine ligase [Nautilia profundicola AmH]
          Length = 344

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 77/318 (24%), Positives = 127/318 (39%), Gaps = 50/318 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
            A+L GG S E E+S+ S       ++    +   ID +R++ LV               
Sbjct: 3   FALLFGGNSFEHEISIVSAITLKDKIKKHTLEFIYIDQNRNMYLVDKQNMKSKYFASGEY 62

Query: 49  -------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                    L  D   N++HG  GEDG +  ILE   I      
Sbjct: 63  KNSQKIEITKGGFKYTKGLLKKDVFLNYDAVINLIHGKDGEDGKLAGILEFFNIKSITPN 122

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIV 143
           + AS +S +K+ +K      GV V    ++     + +     P +IKP + GSS+G+ V
Sbjct: 123 VEASVISYNKVLTKAYAKEIGVNVIDYEII----TEPKSSFDFPIIIKPARLGSSIGVSV 178

Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE----LTCGVMGDASLDVTEIAVPKSDF 199
           +K  +    D     +    D ++ E +++GIE      C   G+  L   E  V KSDF
Sbjct: 179 VKTQEE--FDYAFDVAREFDDLIIAEPFIEGIEEYNLAGCLAGGEFMLSNIE-KVEKSDF 235

Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
             +E KY   +  +V+ + +  D+ + +++     + +     I R DF     S  V+ 
Sbjct: 236 LDFEKKYMDFSRKNVMLSDVDKDLTERIKKTFKKIYNSTFKNAIIRCDFFVKEGS--VYL 293

Query: 260 LEINVQPGMTPVSIFPEM 277
            EIN  PG     +F + 
Sbjct: 294 NEINPIPGSMANYLFDDF 311


>gi|18398265|ref|NP_566334.1| D-alanine--D-alanine ligase family [Arabidopsis thaliana]
 gi|26451726|dbj|BAC42958.1| unknown protein [Arabidopsis thaliana]
 gi|28973361|gb|AAO64005.1| unknown protein [Arabidopsis thaliana]
 gi|332641164|gb|AEE74685.1| D-alanine--D-alanine ligase family protein [Arabidopsis thaliana]
          Length = 519

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 96/386 (24%), Positives = 156/386 (40%), Gaps = 94/386 (24%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVS--QIDVD------------------- 39
           + ++ GG S+ER +SL+S ++    ++  G  VS   ID D                   
Sbjct: 80  VGLICGGPSAERGISLNSARSVLDHIQGDGINVSCYYIDPDLKAFAISSAQVYSNTPSDF 139

Query: 40  -----------RSVGLVLAHL--KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
                       S+  +  HL    D+ F V+HG FGEDG +Q +LE   IP+  +G   
Sbjct: 140 DFKLESLAQGFSSLSELAEHLVSAVDIVFPVIHGRFGEDGGIQELLESHNIPFVGTGSRE 199

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNR-----------FTMDSQHLISPPYVIKPLKG 135
              + DK  +   +   G    P+ LV             FT +   L     V+KP K 
Sbjct: 200 CFRAFDKYEASLELKELGFMTVPNYLVQGTGVDKSEIALWFTDNQLDLEMGKVVVKPAKA 259

Query: 136 GSSLGIIV-------IKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASL 187
           GSS+G+ V       IKK   + L+ +        D++++E ++ D  E T  V+   S 
Sbjct: 260 GSSIGVKVAFGVNDSIKKATELILEGID-------DRVVVEVFIEDAYEFTAIVLDVGSG 312

Query: 188 DV--------TEIAV-------PKSD-FYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRL 230
            V        TE+ +       PK +  + Y  KY  +   T+  P + P+ + K ++  
Sbjct: 313 SVCHPVVLMPTEVQLQFHGIGDPKENAIFDYRRKYLPTQQVTYHTPPRFPIHVIKSIREE 372

Query: 231 AFLAHQAIGCRGISRSDFLF--------DPLSRK--------VFWLEINVQPGMTPVSIF 274
           A L  Q +G R  +R D  +         P+S          + + +IN+  GM   S  
Sbjct: 373 ASLIFQKLGLRDFARIDGWYLAPNSNLSSPVSETLGGTKSGDIIFTDINLISGMEQTSFL 432

Query: 275 PEMAAYAGYSFRELLLWMVEDASCLR 300
            + A+  G+S   +L  +V  A C R
Sbjct: 433 FQQASKVGFSHSNILRTIVHRA-CSR 457


>gi|42572327|ref|NP_974259.1| D-alanine--D-alanine ligase family [Arabidopsis thaliana]
 gi|332641165|gb|AEE74686.1| D-alanine--D-alanine ligase family protein [Arabidopsis thaliana]
          Length = 845

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 96/386 (24%), Positives = 156/386 (40%), Gaps = 94/386 (24%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVS--QIDVD------------------- 39
           + ++ GG S+ER +SL+S ++    ++  G  VS   ID D                   
Sbjct: 80  VGLICGGPSAERGISLNSARSVLDHIQGDGINVSCYYIDPDLKAFAISSAQVYSNTPSDF 139

Query: 40  -----------RSVGLVLAHL--KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
                       S+  +  HL    D+ F V+HG FGEDG +Q +LE   IP+  +G   
Sbjct: 140 DFKLESLAQGFSSLSELAEHLVSAVDIVFPVIHGRFGEDGGIQELLESHNIPFVGTGSRE 199

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNR-----------FTMDSQHLISPPYVIKPLKG 135
              + DK  +   +   G    P+ LV             FT +   L     V+KP K 
Sbjct: 200 CFRAFDKYEASLELKELGFMTVPNYLVQGTGVDKSEIALWFTDNQLDLEMGKVVVKPAKA 259

Query: 136 GSSLGIIV-------IKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASL 187
           GSS+G+ V       IKK   + L+ +        D++++E ++ D  E T  V+   S 
Sbjct: 260 GSSIGVKVAFGVNDSIKKATELILEGID-------DRVVVEVFIEDAYEFTAIVLDVGSG 312

Query: 188 DV--------TEIAV-------PKSD-FYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRL 230
            V        TE+ +       PK +  + Y  KY  +   T+  P + P+ + K ++  
Sbjct: 313 SVCHPVVLMPTEVQLQFHGIGDPKENAIFDYRRKYLPTQQVTYHTPPRFPIHVIKSIREE 372

Query: 231 AFLAHQAIGCRGISRSDFLF--------DPLSRK--------VFWLEINVQPGMTPVSIF 274
           A L  Q +G R  +R D  +         P+S          + + +IN+  GM   S  
Sbjct: 373 ASLIFQKLGLRDFARIDGWYLAPNSNLSSPVSETLGGTKSGDIIFTDINLISGMEQTSFL 432

Query: 275 PEMAAYAGYSFRELLLWMVEDASCLR 300
            + A+  G+S   +L  +V  A C R
Sbjct: 433 FQQASKVGFSHSNILRTIVHRA-CSR 457



 Score = 45.8 bits (107), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 43/77 (55%), Gaps = 3/77 (3%)

Query: 29  AGFKVS-QIDVDRSVGLVLAHLKPDLA--FNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
           AGF ++ ++    S+   + H K   A  F  +HG  GEDG +Q +LE   + YT  G+L
Sbjct: 598 AGFDITDELPRKYSLKEWIKHAKEAQATVFIAVHGGIGEDGTLQGLLEDEGVSYTGPGVL 657

Query: 86  ASALSMDKMRSKQVVSS 102
           AS   MDK+ + Q +S+
Sbjct: 658 ASRTCMDKVMTSQALSN 674


>gi|157363697|ref|YP_001470464.1| D-alanine--D-alanine ligase [Thermotoga lettingae TMO]
 gi|157314301|gb|ABV33400.1| D-alanine--D-alanine ligase [Thermotoga lettingae TMO]
          Length = 334

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 74/266 (27%), Positives = 129/266 (48%), Gaps = 19/266 (7%)

Query: 46  LAHLKPDLAFNVLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103
           L   K D+ +N   G +    +  V AIL    IPYT S     A+ +DK  +KQ++ + 
Sbjct: 56  LTSEKVDIVYNFAEGTYSRAREAQVPAILSFYNIPYTGSDATTLAVCLDKALTKQILLTK 115

Query: 104 GVPVCPSILVNRFTMDS-QHLISPPYVIKPLKGGSSLGI----IVIKKDQ-SIPLDLLQS 157
            +   P   V R   +  +  +  P ++K    GSS GI    +V   D+    +D L S
Sbjct: 116 DIK-TPRFQVIRSPQEKLRKNMRFPLILKLNAEGSSKGISETGLVHNYDEYKKEIDRLFS 174

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDAS----LDVTEIAVPK-SDFYSYELKYSS-LNS 211
               + + +L+E+++ G E T GV+ + +    L + EI      +FYSY++K +S    
Sbjct: 175 I---YSEPVLVEEFIRGREFTIGVLQEGNKYYVLPIMEIHFKHGKEFYSYKVKKNSDYYV 231

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP- 270
            +  PAKI L + ++++ +A    + +  + ++R D          ++LEIN  PGM   
Sbjct: 232 DYTCPAKIDLMLERKLKNMAVKICKTLEIKDVARMDLRVSQEDNNPYFLEINPLPGMARG 291

Query: 271 VSIFPEMAAYAGYSFRELLLWMVEDA 296
            S  P +A  A  ++ EL+L ++E+A
Sbjct: 292 FSDLPRIAEVADLTYEELILHVLENA 317


>gi|119512131|ref|ZP_01631223.1| D-alanine--D-alanine ligase [Nodularia spumigena CCY9414]
 gi|119463221|gb|EAW44166.1| D-alanine--D-alanine ligase [Nodularia spumigena CCY9414]
          Length = 350

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 69/245 (28%), Positives = 121/245 (49%), Gaps = 23/245 (9%)

Query: 69  QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPY 128
           +A+ +LL+IP   +     A++  K R+K +V++ GV V    L+    + +   I+PP 
Sbjct: 100 RALFDLLKIPCVGNSADIMAIASHKARTKAIVAAAGVKVPRGELLRPGDVPT---ITPPV 156

Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVM---GD 184
           VIKP+   +SLG+ ++K+       L   +++ + D++++E +++ G E+ CG++   GD
Sbjct: 157 VIKPVSSDNSLGVALVKEASDYEAAL--QTAFEYADEVIVETFIELGREVRCGIIVKDGD 214

Query: 185 A---SLDVTEIAVPKSDFYSYELKYSSLNSTHV-LPAKI--------PLD-IYKEVQRLA 231
                L+  ++   +    SY  K    +  ++   AK         P D I K VQ +A
Sbjct: 215 LVGLPLEEYKLDPDEKPIRSYADKLQKTDDGNLSFSAKDNMKSWIVDPSDPITKRVQEVA 274

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
            + HQA+GCR  S  DF  DP  +  F LE  +     P S+   MA  AG    EL + 
Sbjct: 275 KMCHQALGCRHYSLFDFRIDPQGQPWF-LEAGLYCSFAPKSVISCMAIAAGIPLNELFMT 333

Query: 292 MVEDA 296
           ++ + 
Sbjct: 334 VIHET 338


>gi|1262411|emb|CAA94438.1| D-alanine:D-alanine ligase-related protein [Streptococcus equinus]
          Length = 211

 Score = 79.7 bits (195), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 54/178 (30%), Positives = 90/178 (50%), Gaps = 9/178 (5%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+AF VLHG  GEDG +Q +  L  IPY    I +SA  MDK  +  +  + G+ V    
Sbjct: 33  DVAFPVLHGKCGEDGAIQGLFVLSGIPYVGCDIQSSAACMDKSLAYILTKNAGIAVPEFQ 92

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
           ++++        ++ P  +KP + GSS G  V K + +  L+    ++  +  ++LIEQ 
Sbjct: 93  MIDKGDKPEAGTLTYPVFVKPARSGSSFG--VTKVNGTEELNAAIEAAGQYDGKILIEQA 150

Query: 172 VDGIELTCGVMGDAS----LDVTEIAVPKSDFYSY---ELKYSSLNSTHVLPAKIPLD 222
           + G E+ C VMG+       +V +I +    F  +   E +  S N+   +PA IP++
Sbjct: 151 ISGCEVGCAVMGNEDDLIVGEVDQIRLSHGIFRIHQENEPEKGSENAMITVPADIPVE 208


>gi|256371402|ref|YP_003109226.1| D-alanine--D-alanine ligase [Acidimicrobium ferrooxidans DSM 10331]
 gi|256007986|gb|ACU53553.1| D-alanine--D-alanine ligase [Acidimicrobium ferrooxidans DSM 10331]
          Length = 369

 Score = 79.7 bits (195), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 68/258 (26%), Positives = 110/258 (42%), Gaps = 28/258 (10%)

Query: 29  AGFKVSQIDVDRSVGLV--LAHLKP-------DLAFNVLHGNFGEDGLVQAILELLEIPY 79
           AG +  ++ V R  G V     L+P       D+  N  HG  GEDG +Q  L+L  + Y
Sbjct: 67  AGARPLELVVGRDGGFVEPRGGLRPKRELLELDVVVNCCHGGPGEDGALQGALDLAGVRY 126

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSL 139
           T      +AL MDK+    ++   G+   P     R T D       PY+ KP  GGSS+
Sbjct: 127 TGPSARTAALGMDKLAFASLLRHHGIACLPREDGRRVTFDG------PYIAKPRFGGSSI 180

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY---VDGIELTCGVMGDASLDVTE---IA 193
           GI V++    +   + +S  +   D +++E Y   +  +++        +L   E    +
Sbjct: 181 GIEVLEDRAQLEARMQRSEHFR--DGMVVEPYRPDLMDVQVALRRFPTPTLSAIERPLRS 238

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE----VQRLAFLAHQAIGCRGISRSDFL 249
            P     +Y  KY  +      P ++P  I  E    ++ LA    + +  RG+ R DFL
Sbjct: 239 APGEPILTYREKYQPIGGMATAPRELPAAIAPELAETIRSLALSVGELLDSRGVMRVDFL 298

Query: 250 FDPLSRKVFWLEINVQPG 267
                 + +  E+N  PG
Sbjct: 299 AS-TEGECYVNEVNTIPG 315


>gi|34556865|ref|NP_906680.1| D-alanyl-alanine synthetase A [Wolinella succinogenes DSM 1740]
 gi|39930816|sp|Q7MA71|DDL_WOLSU RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|34482580|emb|CAE09580.1| PUTATIVE D-ALANINE--D-ALANINE LIGASE [Wolinella succinogenes]
          Length = 345

 Score = 79.7 bits (195), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 66/234 (28%), Positives = 108/234 (46%), Gaps = 17/234 (7%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D A N++HG  GEDG + ++LE   IP+    I AS +S +K  +K      GV   P +
Sbjct: 88  DTALNLIHGGDGEDGKLASLLEFFRIPFIGPRIEASVMSFNKHLTKLYAKERGVKTLPYL 147

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
           L  R     +     P ++KPL+ GSS+G+ + K  Q   LD     ++   +  L+E +
Sbjct: 148 LA-RKNEKREFGNEFPLIVKPLRLGSSIGVSIAKNRQE--LDYALDVAFEFDEAALLEPF 204

Query: 172 VDGIE----LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227
           + GI+      C + G+    + E    K +F  ++ KY   + T  L   +  D+ +  
Sbjct: 205 MQGIKEYNLAGCKINGEYHFSIIE-EPQKKEFLDFDKKYLDFSRTQKL---LKADLSEAS 260

Query: 228 QRL---AFLAHQAIGCRG-ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
           +RL   AF+        G + R DF     +++VF  EIN  PG     +F + 
Sbjct: 261 ERLLKEAFIKLYDDSFEGSLIRCDFFVQ--NQEVFLNEINPIPGSLANYLFEDF 312


>gi|21536607|gb|AAM60939.1| unknown [Arabidopsis thaliana]
          Length = 516

 Score = 79.7 bits (195), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 94/386 (24%), Positives = 155/386 (40%), Gaps = 94/386 (24%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD--------------------- 39
           + ++ GG S+ER +SL+S ++    ++  G  VS   +D                     
Sbjct: 77  VGLICGGPSAERGISLNSARSVLDHIQCDGINVSCYYIDPDLKAFAISSAQVYSNTPSDF 136

Query: 40  -----------RSVGLVLAHL--KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
                       S+  +  HL    D+ F V+HG FGEDG +Q +LE   IP+  +G   
Sbjct: 137 DFKLESLAQGFSSLSELAEHLVSAVDIVFXVIHGRFGEDGGIQELLESHNIPFVGTGSRE 196

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNR-----------FTMDSQHLISPPYVIKPLKG 135
              + DK  +   +   G    P+ LV             FT +   L     V+KP K 
Sbjct: 197 CFRAFDKYEASLELKELGFMTVPNYLVQGTGVDKSEIALWFTDNQLDLEMGKVVVKPAKA 256

Query: 136 GSSLGIIV-------IKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASL 187
           GSS+G+ V       IKK   + L+ +        D++++E ++ D  E T  V+   S 
Sbjct: 257 GSSIGVKVAFGVNDSIKKATELILEGID-------DRVVVEVFIEDAYEFTAIVLDVGSG 309

Query: 188 DV--------TEIAV-------PKSD-FYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRL 230
            V        TE+ +       PK +  + Y  KY  +   T+  P + P+ + K ++  
Sbjct: 310 SVCHPVVLMPTEVQLQFHGIGDPKENAIFDYRRKYLPTQQVTYHTPPRFPIHVIKSIREE 369

Query: 231 AFLAHQAIGCRGISRSDFLF--------DPLSRK--------VFWLEINVQPGMTPVSIF 274
           A L  Q +G R  +R D  +         P+S          + + +IN+  GM   S  
Sbjct: 370 ASLIFQKLGLRDFARIDGWYLAPNSNLSSPVSETLGGTKSGDIIFTDINLISGMEQTSFL 429

Query: 275 PEMAAYAGYSFRELLLWMVEDASCLR 300
            + A+  G+S   +L  +V  A C R
Sbjct: 430 FQQASKVGFSHSNILRTIVHRA-CSR 454


>gi|223040206|ref|ZP_03610485.1| D-alanine--D-alanine ligase (D-alanylalanine
           synthetase)(D-Ala-D-Ala ligase) [Campylobacter rectus
           RM3267]
 gi|222878567|gb|EEF13669.1| D-alanine--D-alanine ligase (D-alanylalanine
           synthetase)(D-Ala-D-Ala ligase) [Campylobacter rectus
           RM3267]
          Length = 344

 Score = 79.7 bits (195), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 67/235 (28%), Positives = 114/235 (48%), Gaps = 13/235 (5%)

Query: 48  HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV 107
            ++ D   N++HG  GEDG + A+LE   + Y    + ASALS +K  +K +    GV  
Sbjct: 84  KIEADAFINLVHGMDGEDGKIAALLEFYGLSYIGPRVEASALSYNKELTKLLAQKAGVNT 143

Query: 108 CPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL 167
               +V+R    S  L   P ++KPL+ GSS+G+ VIK    +   L    ++    ++L
Sbjct: 144 LNYEVVSRAKAPSLPL---PVILKPLRLGSSIGVSVIKDASELEYGL--DVAYEFDKEIL 198

Query: 168 IEQYVDGIELT--CGVMGDASLDVTEIAVP-KSDFYSYELKYSSL-NSTHVLPAKIPLDI 223
           +E +++G++     G   D  +  + I  P K +F  YE KY S  N +    A I  ++
Sbjct: 199 VEPFIEGVKEYNLAGCKADGEIKFSIIEEPKKKEFLDYEQKYMSFSNESRAREADIGAEL 258

Query: 224 YKEVQRLAFLAHQAIGCRG-ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
             ++++ +F      G  G + R DF    ++ +V+  EIN  PG     +F + 
Sbjct: 259 AAKLKQ-SFERIYNCGFDGALIRCDFF--EVNGEVYLNEINPNPGSMANYLFDDF 310


>gi|42572325|ref|NP_974258.1| D-alanine--D-alanine ligase family [Arabidopsis thaliana]
 gi|332641163|gb|AEE74684.1| D-alanine--D-alanine ligase family protein [Arabidopsis thaliana]
          Length = 937

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 96/386 (24%), Positives = 156/386 (40%), Gaps = 94/386 (24%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVS--QIDVD------------------- 39
           + ++ GG S+ER +SL+S ++    ++  G  VS   ID D                   
Sbjct: 80  VGLICGGPSAERGISLNSARSVLDHIQGDGINVSCYYIDPDLKAFAISSAQVYSNTPSDF 139

Query: 40  -----------RSVGLVLAHL--KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
                       S+  +  HL    D+ F V+HG FGEDG +Q +LE   IP+  +G   
Sbjct: 140 DFKLESLAQGFSSLSELAEHLVSAVDIVFPVIHGRFGEDGGIQELLESHNIPFVGTGSRE 199

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNR-----------FTMDSQHLISPPYVIKPLKG 135
              + DK  +   +   G    P+ LV             FT +   L     V+KP K 
Sbjct: 200 CFRAFDKYEASLELKELGFMTVPNYLVQGTGVDKSEIALWFTDNQLDLEMGKVVVKPAKA 259

Query: 136 GSSLGIIV-------IKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASL 187
           GSS+G+ V       IKK   + L+ +        D++++E ++ D  E T  V+   S 
Sbjct: 260 GSSIGVKVAFGVNDSIKKATELILEGID-------DRVVVEVFIEDAYEFTAIVLDVGSG 312

Query: 188 DV--------TEIAV-------PKSD-FYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRL 230
            V        TE+ +       PK +  + Y  KY  +   T+  P + P+ + K ++  
Sbjct: 313 SVCHPVVLMPTEVQLQFHGIGDPKENAIFDYRRKYLPTQQVTYHTPPRFPIHVIKSIREE 372

Query: 231 AFLAHQAIGCRGISRSDFLF--------DPLSRK--------VFWLEINVQPGMTPVSIF 274
           A L  Q +G R  +R D  +         P+S          + + +IN+  GM   S  
Sbjct: 373 ASLIFQKLGLRDFARIDGWYLAPNSNLSSPVSETLGGTKSGDIIFTDINLISGMEQTSFL 432

Query: 275 PEMAAYAGYSFRELLLWMVEDASCLR 300
            + A+  G+S   +L  +V  A C R
Sbjct: 433 FQQASKVGFSHSNILRTIVHRA-CSR 457



 Score = 60.1 bits (144), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 82/332 (24%), Positives = 130/332 (39%), Gaps = 71/332 (21%)

Query: 29  AGFKVS-QIDVDRSVGLVLAHLKPDLA--FNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
           AGF ++ ++    S+   + H K   A  F  +HG  GEDG +Q +LE   + YT  G+L
Sbjct: 598 AGFDITDELPRKYSLKEWIKHAKEAQATVFIAVHGGIGEDGTLQGLLEDEGVSYTGPGVL 657

Query: 86  ASALSMDKMRSKQVVS----------SCGVPVCPSILVNRFTMDSQHLISP----PYVIK 131
           AS   MDK+ + Q +S          S  V     I+   F      LI         +K
Sbjct: 658 ASRTCMDKVMTSQALSNLSEFGIHTISKDVKRTEDIMHETFPNVWDELIKKLQCLTLCVK 717

Query: 132 PLKGGSSLGI--IVIKKDQSIPLDLLQSS---------SWNHG---------DQLLIEQY 171
           P K G S G+  +   +D ++ +  L+           S  HG         + L+ E +
Sbjct: 718 PAKDGCSTGVARLCSSEDLAVYVQALKDCIPRIPPNTLSKTHGMIEMPNPTPEFLIFEPF 777

Query: 172 VDG---------------------IELTCGVMGDA----SLDVTEIAVPKSDFYSYELKY 206
           V+                      +E+T GV+G      SL  +       D  S E K+
Sbjct: 778 VETDEIIVSSKAKQQLSWKGRRRWVEMTVGVIGKRGSMHSLSPSLTVKESGDILSLEEKF 837

Query: 207 ---SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
              + +N T   P  +  +  +  ++   L  + +G  G SR D      + +V  +E+N
Sbjct: 838 QGGTGINLTPPPPTIMSKEALERCKQGIELIAETLGLEGFSRIDAFVHVETGEVLVIEVN 897

Query: 264 VQPGMTPVSIFPEMA------AYAGYSFRELL 289
             PGMTP ++  + A       Y    FR LL
Sbjct: 898 TVPGMTPSTVLIQQALAEQPPMYPPQFFRTLL 929


>gi|1255015|gb|AAB17898.1| D-alanine:D-alanine ligase [Enterococcus cecorum]
          Length = 195

 Score = 79.3 bits (194), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 56/189 (29%), Positives = 91/189 (48%), Gaps = 14/189 (7%)

Query: 71  ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--SILVNRFTMDSQHLISP-- 126
            LE L++PY  +G+LASA  MDK+ +K V+ + G+P  P   +L   +  D Q +     
Sbjct: 1   FLETLKMPYVGTGVLASACGMDKIMTKYVLQAGGIPQVPYVPVLAMHWKQDPQLIFEHCE 60

Query: 127 -----PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
                P  +KP   GSS+GI   K +    L+   + ++ +  + +IEQ   GIE+    
Sbjct: 61  GSLLYPMFVKPANMGSSVGI--SKAENRDELEAALNEAFLYDTRGIIEQ---GIEVAVLE 115

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241
           M +    +    V    FY Y  KY        +PA++P ++ ++ Q  A  A+  +G  
Sbjct: 116 MKNVRTTMAGEIVKDVAFYDYNSKYIDNKIVMQIPAQVPDEVQQKAQEYAKKAYTMLGGS 175

Query: 242 GISRSDFLF 250
           G+SR DF  
Sbjct: 176 GLSRCDFFL 184


>gi|115378993|ref|ZP_01466124.1| D-alanine--D-alanine ligase [Stigmatella aurantiaca DW4/3-1]
 gi|115363997|gb|EAU63101.1| D-alanine--D-alanine ligase [Stigmatella aurantiaca DW4/3-1]
          Length = 593

 Score = 79.3 bits (194), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 71/273 (26%), Positives = 119/273 (43%), Gaps = 26/273 (9%)

Query: 21  ACASALEDAGFKVSQIDVDRSVGLVLAHLK---PDLAFNVLHGNFGE--DGLVQAILELL 75
           A A A+E  G ++ + +V       +A L+   PDL FN   G  G   +    A+ + L
Sbjct: 28  ALAGAIERLGHRLERFEVSGPASRTVARLEAYSPDLIFNTAEGRRGRFREAFYPALFDEL 87

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKG 135
             PYT S   A A+++DK  +K +++  G+       V + +  +   +  P ++KP   
Sbjct: 88  GFPYTGSDAYALAVTLDKQLTKLILAKHGIRTPGWQYVEKLSELTAENLRFPVIVKPNFE 147

Query: 136 GSSLGII---VIKKDQSIPLDLLQS-SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           GSS GI    + +    +   + Q+ + +  G  +L+E+Y+ G +LT   +     D   
Sbjct: 148 GSSKGITQDSIAETLDEVRAKVTQALAKYPAG--VLVEEYIGGKDLTVPFLAAVDNDYDG 205

Query: 192 IAVP-------------KSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQA 237
           +  P             K   Y YELK    ++  V  PA I     ++V+++A    Q 
Sbjct: 206 VLSPVEYVIDPAATVGRKYPIYDYELKTKHHSAVRVRAPANISAKTAEDVRKMAQTIFQV 265

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270
           + CR + R DF         F LEIN  P + P
Sbjct: 266 LDCRDLGRIDFRLSDAGVPYF-LEINALPSLEP 297



 Score = 66.6 bits (161), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 90/171 (52%), Gaps = 8/171 (4%)

Query: 20  KACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGE--DGLVQAILELLEI 77
           +A   A+   G +V  ++ ++ +  VLA    D+ FN+  G  G   +  V A+LELL+I
Sbjct: 378 QAIREAIASWGHEVVDLEANQELPSVLASTPLDVVFNIAEGFKGRNRESQVPAMLELLDI 437

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGV--PVCPSILVNRFTMDSQHLISPPYVIKPLKG 135
           PYT S     ++++DK  +K++V   G+  P    +L  +  ++       P ++KP+  
Sbjct: 438 PYTGSDPATLSIALDKALAKKIVRQAGIHTPNFQLMLTGKERLNKDFTF--PLMVKPVAE 495

Query: 136 GSSLGII--VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
           GSS G++   +   ++   ++++  +  +    L+E+Y+ G E T G++G+
Sbjct: 496 GSSKGVVSKSVCHSEAELREVVKEIASKYKQPALVEEYIGGREFTVGLLGE 546


>gi|197111776|gb|ACH43043.1| D-alanine:D-lactate ligase VanB2 [Enterococcus faecium]
          Length = 202

 Score = 79.3 bits (194), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 54/178 (30%), Positives = 90/178 (50%), Gaps = 9/178 (5%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+AF VLHG  GEDG +Q +  L  IPY    I +SA  MDK  +  +  + G+ V    
Sbjct: 26  DVAFPVLHGKCGEDGAIQGLFVLSGIPYVGCDIQSSAACMDKSLAYILTKNAGIAVPEFQ 85

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
           ++++        ++ P  +KP + GSS G  V K + +  L+    ++  +  ++LIEQ 
Sbjct: 86  IIDKGDKPEAGALTYPVFVKPARSGSSFG--VTKVNGTEELNAAIEAAGQYDGKILIEQA 143

Query: 172 VDGIELTCGVMGDAS----LDVTEIAVPKSDFYSY---ELKYSSLNSTHVLPAKIPLD 222
           + G E+ C VMG+       +V +I +    F  +   E +  S N+   +PA IP++
Sbjct: 144 ISGCEVGCAVMGNEDDLIVGEVDQIRLSHGIFRIHQENEPEKGSENAMITVPADIPVE 201


>gi|58045580|gb|AAW65098.1| vancomycin resistance protein [Enterococcus gallinarum]
          Length = 156

 Score = 79.3 bits (194), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 87/157 (55%), Gaps = 10/157 (6%)

Query: 65  DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL- 123
           DG +Q +LEL+ +PY    + ASAL M+K    Q+  + G+   P++L++R+  D   + 
Sbjct: 1   DGCIQGLLELMNLPYVGCHVAASALCMNKWLLHQLADTMGIASAPTLLLSRYENDPATID 60

Query: 124 -----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                   P  IKP + GSS GI  +    ++   L  ++++ +G  +LI++ + GIE+ 
Sbjct: 61  RFIQDHGFPIFIKPNEAGSSKGITKVTDKTALQSAL--TTAFAYGSTVLIQKAIAGIEIG 118

Query: 179 CGVMGDASLDVTEI-AVPKSD-FYSYELKYSSLNSTH 213
           CG++G+  L +    A+   D F+ +E KY  +++T+
Sbjct: 119 CGILGNEQLTIGACDAISLVDGFFDFEEKYQLISATN 155


>gi|268315712|ref|YP_003289431.1| D-alanine--D-alanine ligase [Rhodothermus marinus DSM 4252]
 gi|262333246|gb|ACY47043.1| D-alanine--D-alanine ligase [Rhodothermus marinus DSM 4252]
          Length = 336

 Score = 79.3 bits (194), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 77/283 (27%), Positives = 129/283 (45%), Gaps = 19/283 (6%)

Query: 23  ASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQA--ILELLEIPYT 80
           A+A+   G K  +I     + + L  L+ D   ++  G  G +    A  + E+  IPY 
Sbjct: 43  AAAIRKLGHKPVRIGTAYDLLVELPDLRIDCGISIAEGARGRNREAYAPMLFEMAGIPYI 102

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCP-SILVNRFTMDSQHLISP-PYVIKPLKGGSS 138
            S  L  +LS+DK  +K +V++ GVP  P         +D   L  P P  +KP   GSS
Sbjct: 103 GSDPLTLSLSLDKAWTKDLVAAAGVPTPPYRTYAGPEDVDPHDLPGPFPLFVKPRYEGSS 162

Query: 139 LGIIVIKKDQSIPLDLLQSS----SWNHGDQLLIEQYVDGIELTCGVMGD---ASLDVTE 191
            GI    K  S  L+ L+      +  +  ++++E +++G E T  V+G+     L V +
Sbjct: 163 KGITAASKVHS--LEALREQVARLTATYRQEVIVEPFIEGSEFTVAVIGNNPPEPLPVLQ 220

Query: 192 IAVPKSDFYS-YELKYSSLNSTHVLPAK--IPL--DIYKEVQRLAFLAHQAIGCRGISRS 246
            AV  +     + L++  +     L A   +PL  ++ + +Q+LA   ++ + CR  +R 
Sbjct: 221 RAVEATTGIGLHALEHRGMKPAAALEAAPYVPLTDELERCLQQLAVRVYEKLQCRDFARL 280

Query: 247 DFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           DF  D    K ++LEIN  P   P   F  +A      + E L
Sbjct: 281 DFRVD-REGKPWFLEINPLPTFAPDGTFAILAELMQRPYVEFL 322


>gi|296128393|ref|YP_003635643.1| D-alanine/D-alanine ligase [Cellulomonas flavigena DSM 20109]
 gi|296020208|gb|ADG73444.1| D-alanine/D-alanine ligase [Cellulomonas flavigena DSM 20109]
          Length = 333

 Score = 79.3 bits (194), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 80/262 (30%), Positives = 126/262 (48%), Gaps = 21/262 (8%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
           ++VGLV A    D+    +HG  GEDG + A+ +L  +    SG+ A A+ MDK  +K V
Sbjct: 73  QAVGLVAAC---DVLLPAVHGPRGEDGTLAALADLAGVACVGSGVRAGAVGMDKWVTKLV 129

Query: 100 VSSCGVPVCPSILVNRFTMDSQHLISP--PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
            ++ GV V    LV      ++    P  P V+KP+  GSS G  V + D    L    +
Sbjct: 130 AAAVGVAVADGRLVRGV---AEACADPRLPAVVKPVSSGSSHG--VRRVDTVEDLADAVA 184

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDF------YSYELKYSSLNS 211
           ++    D++L+E+ V G E+   V+  A  D T +  P  +       +    KY   ++
Sbjct: 185 AALELDDRVLVEEVVTGREIDVAVLRRA--DGTTLVSPALEIGHAGAVFDTATKYDG-SA 241

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271
             V+PA +     + +   A     A+GC G++R+DF     +R     E+N  PGMT  
Sbjct: 242 RFVVPAPLEPADAEALAAAALSVVDALGCDGVARADFFL--TARGPVLNEVNTMPGMTAH 299

Query: 272 SIFPEMAAYAGYSFRELLLWMV 293
           S  P M A AG ++ EL+  +V
Sbjct: 300 SQVPVMLAAAGLTYAELVAELV 321


>gi|311351600|gb|ADP92985.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351602|gb|ADP92986.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351610|gb|ADP92990.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351612|gb|ADP92991.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351622|gb|ADP92996.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351640|gb|ADP93005.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351642|gb|ADP93006.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351644|gb|ADP93007.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351646|gb|ADP93008.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351648|gb|ADP93009.1| D-alanine-D-alanine ligase [Clostridium perfringens]
          Length = 196

 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 51/187 (27%), Positives = 103/187 (55%), Gaps = 7/187 (3%)

Query: 66  GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF-TMDSQHL- 123
           G VQ++L+ L IP++  G L+SA+ MDK  +K++++   V      +V+    +D + + 
Sbjct: 1   GTVQSVLKTLGIPFSGCGPLSSAICMDKDMTKRILAFGNVRTARWEMVSSVDEIDYEKIE 60

Query: 124 -ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            +  P  IKP  GGSS+   +++  +++   +L++  ++   +++IE+Y+ G E+TC ++
Sbjct: 61  NLGYPVFIKPNNGGSSVATTLVESKEAVKDAVLEALKYDT--EVMIEEYIKGDEITCPII 118

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
               L V  I  PK  F+    KY    +   +  ++  D++KEV+++A   ++ + C  
Sbjct: 119 DGKMLPVLAIK-PKGKFFDIASKYEDGGADEFI-VELNEDLHKEVEKMALETYKLLKCDV 176

Query: 243 ISRSDFL 249
            +R D L
Sbjct: 177 YARVDML 183


>gi|291286723|ref|YP_003503539.1| D-alanine--D-alanine ligase [Denitrovibrio acetiphilus DSM 12809]
 gi|290883883|gb|ADD67583.1| D-alanine--D-alanine ligase [Denitrovibrio acetiphilus DSM 12809]
          Length = 336

 Score = 79.0 bits (193), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 92/314 (29%), Positives = 138/314 (43%), Gaps = 49/314 (15%)

Query: 7   GISSEREVSLSSGK---ACASALEDAGFKVSQIDVDRSVGLVLAHLKP-DLAFNVLHG-- 60
           G S E      S +   A  +AL + G  V +I    ++   LA  K  DL FN+  G  
Sbjct: 21  GFSEEDTAEFDSEETISAIETALCECGHSVERIGNYFALHKKLAAQKSWDLVFNIAEGLY 80

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF-TMD 119
             G + LV  +L+   I YT S  LA +L++ K  +K ++  CGV      +VN    +D
Sbjct: 81  GMGRESLVPCVLDAYGINYTFSDPLAISLTLHKGMAKHILKGCGVATADFAVVNNLGDID 140

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD--------------Q 165
           S +L  P +  KP   G+  GI     D+SI         WN  D               
Sbjct: 141 SINLGFPLFA-KPAAEGTGKGI----SDRSI--------VWNSADLKRVCTELLVRYSQP 187

Query: 166 LLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSD----FYSYELKYSSLNSTHVLPA 217
           +L+E+ ++G E T G++G      S+ V EI +P++      YSYE K    N   +L  
Sbjct: 188 VLVEKLLEGREFTVGIIGSGSEAVSVGVMEI-LPRNKEGIFVYSYENKE---NCESLLDY 243

Query: 218 KIPL-DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV-SIFP 275
            +   D       +A  A++A+GCR   R D   D        +E+N  PG+ P  S  P
Sbjct: 244 SLVYGDTADRCADVALRAYRALGCRDAGRVDVRLDG-DGIANVIELNPLPGLHPTHSDLP 302

Query: 276 EMAAYAGYSFRELL 289
            +   AG S+R+L+
Sbjct: 303 MIWTKAGMSYRQLI 316


>gi|302341653|ref|YP_003806182.1| D-alanine--D-alanine ligase [Desulfarculus baarsii DSM 2075]
 gi|301638266|gb|ADK83588.1| D-alanine--D-alanine ligase [Desulfarculus baarsii DSM 2075]
          Length = 328

 Score = 79.0 bits (193), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 74/268 (27%), Positives = 119/268 (44%), Gaps = 15/268 (5%)

Query: 45  VLAHLKPDLAFNVLHG--NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS 102
           +LA  + DL FN+  G   FG +  V A+L+     Y  S  L  +L++ K  +K+VV  
Sbjct: 59  LLAGQRWDLVFNIAEGLGGFGREAQVPAVLDYHGQAYVFSDPLTLSLTLHKAMAKRVVRD 118

Query: 103 CGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK--DQSIPLDLLQSSSW 160
            G+      +++     ++  ++ P   KP+  G+  G+    K  D +    + Q    
Sbjct: 119 LGLATPDFAVIDDVAQLAEVSLAYPLFAKPVAEGTGRGVEAAGKVGDAAALAAVCQRLLA 178

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDAS-------LDVTEIAVPKSDFYSYELKYSSLNSTH 213
            +G  +L+E ++ G E T GV+G  S       ++V  +A  +++ YSY  K +      
Sbjct: 179 RYGQPVLVEHFLPGREFTVGVLGTGSAARAVAVMEVILLARAEAEVYSYHNKENCEGLVR 238

Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV-S 272
              A  PL         A  AH+ +GCR  SR D   D   R  F +EIN   G+ P  S
Sbjct: 239 YELADGPLAQACAAL--AVAAHRGLGCRDASRVDLRCDETGRPHF-MEINPLAGLCPGHS 295

Query: 273 IFPEMAAYAGYSFRELLLWMVEDASCLR 300
             P +   AG  + EL+  +V  A   R
Sbjct: 296 DLPILCGLAGMGYDELIEAIVASALARR 323


>gi|317010958|gb|ADU84705.1| D-alanyl-alanine synthetase A [Helicobacter pylori SouthAfrica7]
          Length = 347

 Score = 79.0 bits (193), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 77/309 (24%), Positives = 133/309 (43%), Gaps = 47/309 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDA----------------------GFKVSQIDV 38
             VL GG S E E+S+ S  A    L+D                           +QI  
Sbjct: 3   FCVLFGGASFEHEISIVSAIALKEVLKDQIKYFIFLDENHHFYLIEKSNMHSKYFAQIKE 62

Query: 39  DRSVGLVLAH-------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
            +   L+LAH             ++  L  N++HG  GEDG + ++LE   I +    + 
Sbjct: 63  KKLPPLMLAHNGLLKNSFLGTKTIELPLMINLVHGGDGEDGKLASLLEFYRIAFIGPRVE 122

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVN-RFTMDSQHLI--SPPYVIKPLKGGSSLGII 142
           AS LS +K  +K    S GV     IL+N +   ++  LI  + P+++KP   GSSLG+ 
Sbjct: 123 ASVLSYNKHLTKLYAKSLGVKTLDHILLNEKNRANALDLINFNFPFIVKPNSAGSSLGVS 182

Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE----LTCGVMGDASLDVTEIAVPKSD 198
           V+++++ +   L    ++ +  ++LIE ++ G++      C +  D      E    K +
Sbjct: 183 VVREEKELAYAL--DGAFEYSKEVLIEPFIQGVKEYNLAGCKIKKDFCFSYVE-EPNKQE 239

Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
           F  ++ KY   +      A IP  + ++++      +  +    I R DF    +  +V+
Sbjct: 240 FLDFKQKYLDFSRAKAPKADIPNALEEQLRENFKKLYNDLFDGAIIRCDFFV--IDNEVY 297

Query: 259 WLEINVQPG 267
             EIN  PG
Sbjct: 298 LNEINPIPG 306


>gi|183221182|ref|YP_001839178.1| putative D-alanine--d-alanine ligase [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Paris)']
 gi|189911273|ref|YP_001962828.1| D-alanine--D-alanine ligase [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167775949|gb|ABZ94250.1| D-alanine--D-alanine ligase [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167779604|gb|ABZ97902.1| Putative D-alanine--d-alanine ligase [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Paris)']
          Length = 329

 Score = 79.0 bits (193), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 77/266 (28%), Positives = 129/266 (48%), Gaps = 24/266 (9%)

Query: 42  VGLVLAHLKPDLAFNVLHGNFG--EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
            G+  ++ K  + +N + G      +  + A+ E L IP+T S      L++DK ++K  
Sbjct: 56  AGIPKSNRKNWIVWNFIEGYLSPSREAYIPALCEYLGIPHTGSHAAVQTLTLDKYKTKLY 115

Query: 100 VSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGI----IVIKKDQ---SIPL 152
           ++S G+P   S L++  +      IS P  +KP   GSSLGI    ++  KD     +P 
Sbjct: 116 LASFGIPTLVSQLID--SESELPRISYPLFVKPNGEGSSLGITDANVIHSKDDWDTQVP- 172

Query: 153 DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD-ASLDVTEIAVPK--SDFYSYELKYSSL 209
            LL++ S      LL+E Y+ G E+T G+MG+  +  V  IA  K  S  Y   +K  S 
Sbjct: 173 KLLETFS-----PLLVEPYLSGEEVTVGIMGNQGNYQVLPIAYVKTPSGVYHEGIKSKS- 226

Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
                L   +P  +  +++ ++    + +G  G  R DF  +  + K F+LE N  PG +
Sbjct: 227 EFLESLDFDLPNHLCSQIESISLQIAERLGSSGYLRIDFKLE--NEKPFFLEANATPGFS 284

Query: 270 PV-SIFPEMAAYAGYSFRELLLWMVE 294
            + S  P +   +G S+ ELL + +E
Sbjct: 285 HIYSTLPLLWERSGRSYSELLQYSLE 310


>gi|15834763|ref|NP_296522.1| UDP-N-acetylmuramate--alanine ligase/D-alanine--D-alanine ligase
           [Chlamydia muridarum Nigg]
 gi|7190180|gb|AAF39021.1| UDP-N-acetylmuramate--alanine ligase/D-alanine--D-alanine ligase
           [Chlamydia muridarum Nigg]
          Length = 833

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 82/336 (24%), Positives = 147/336 (43%), Gaps = 45/336 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKV--------------SQIDVDRSVGLVL 46
           + ++ GG S E ++S+ S +  A  L  + ++V              S +++    G  +
Sbjct: 480 LGLICGGRSCEHDISILSAQNIAKYLSHSFYEVQYFLITREGLWKTGSSLELSEETGKTI 539

Query: 47  AH-------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
                     K D+   +LHG +GEDG +Q  LE +  PYT   ++ +A+ M+K+ +K+ 
Sbjct: 540 FDPEIAGKLSKVDVILPILHGPYGEDGAMQGFLETIGKPYTGPSLVFAAIGMNKVLTKRF 599

Query: 100 VSSCGVPVCP--SILVNRFTMDSQHLI-------SPPYVIKPLKGGSSLGIIVIKKDQSI 150
           +S  G+PV P   + +  +  D +  +       S P  +K +  GSS+G+  +  D + 
Sbjct: 600 MSDLGIPVVPYLPLTLKGWKQDQEKCLAQIKAAFSFPMFVKSVHLGSSIGVFEV-HDTNE 658

Query: 151 PLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA-----VPKSDFYSYELK 205
             D +  +     D  + E  +   E+    +GD S  V  +A       +  F  Y+ K
Sbjct: 659 LRDAINEAFVRDDDVFIEESRLGCREIEVSFLGDGS-GVFFVAGMHERRGRGGFIDYQEK 717

Query: 206 YSSLNSTHVLPAKIPLDIYKEVQR----LAFLAHQAIGCRGISRSDFLFDPLSRKVFWL- 260
           Y  L+          +D+ KE +     +A   ++ +  +G  R DF  D  +   FWL 
Sbjct: 718 Y-GLSGRASAQIVFDVDLSKETREQLLGVAEKIYRLLQGKGSCRIDFFVD--NEGSFWLS 774

Query: 261 EINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           EIN  PGMT  S F       G++  +++  +V D 
Sbjct: 775 EINPIPGMTTASPFLAAFVRKGWNREQIVHQLVIDG 810


>gi|270284930|ref|ZP_06194324.1| bifunctional D-alanyl-alanine synthetase
           A/UDP-N-acetylmuramate--L-alanine ligase [Chlamydia
           muridarum Nigg]
 gi|270288956|ref|ZP_06195258.1| bifunctional D-alanyl-alanine synthetase
           A/UDP-N-acetylmuramate--L-alanine ligase [Chlamydia
           muridarum Weiss]
 gi|14194947|sp|Q9PLG1|MUDD_CHLMU RecName: Full=Bifunctional enzyme MurC/Ddl; Includes: RecName:
           Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase;
           Includes: RecName: Full=D-alanine--D-alanine ligase;
           AltName: Full=D-Ala-D-Ala ligase; AltName:
           Full=D-alanylalanine synthetase
          Length = 802

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 82/336 (24%), Positives = 147/336 (43%), Gaps = 45/336 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKV--------------SQIDVDRSVGLVL 46
           + ++ GG S E ++S+ S +  A  L  + ++V              S +++    G  +
Sbjct: 449 LGLICGGRSCEHDISILSAQNIAKYLSHSFYEVQYFLITREGLWKTGSSLELSEETGKTI 508

Query: 47  AH-------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
                     K D+   +LHG +GEDG +Q  LE +  PYT   ++ +A+ M+K+ +K+ 
Sbjct: 509 FDPEIAGKLSKVDVILPILHGPYGEDGAMQGFLETIGKPYTGPSLVFAAIGMNKVLTKRF 568

Query: 100 VSSCGVPVCP--SILVNRFTMDSQHLI-------SPPYVIKPLKGGSSLGIIVIKKDQSI 150
           +S  G+PV P   + +  +  D +  +       S P  +K +  GSS+G+  +  D + 
Sbjct: 569 MSDLGIPVVPYLPLTLKGWKQDQEKCLAQIKAAFSFPMFVKSVHLGSSIGVFEV-HDTNE 627

Query: 151 PLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA-----VPKSDFYSYELK 205
             D +  +     D  + E  +   E+    +GD S  V  +A       +  F  Y+ K
Sbjct: 628 LRDAINEAFVRDDDVFIEESRLGCREIEVSFLGDGS-GVFFVAGMHERRGRGGFIDYQEK 686

Query: 206 YSSLNSTHVLPAKIPLDIYKEVQR----LAFLAHQAIGCRGISRSDFLFDPLSRKVFWL- 260
           Y  L+          +D+ KE +     +A   ++ +  +G  R DF  D  +   FWL 
Sbjct: 687 Y-GLSGRASAQIVFDVDLSKETREQLLGVAEKIYRLLQGKGSCRIDFFVD--NEGSFWLS 743

Query: 261 EINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           EIN  PGMT  S F       G++  +++  +V D 
Sbjct: 744 EINPIPGMTTASPFLAAFVRKGWNREQIVHQLVIDG 779


>gi|207092530|ref|ZP_03240317.1| D-alanyl-alanine synthetase A [Helicobacter pylori HPKX_438_AG0C1]
          Length = 347

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 78/321 (24%), Positives = 137/321 (42%), Gaps = 47/321 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASAL-----------EDAGFKV-----------SQIDV 38
             VL GG S E E+S+ S  A   AL           E+  F +           +QI  
Sbjct: 3   FCVLFGGASFEHEISIVSAIALKEALKGRIKYFIFLDENHHFYLIEETNMHSKYFAQIKE 62

Query: 39  DRSVGLVLAH-------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
            +   L+L H             ++  L  N++HG  GEDG + ++LE   I +    I 
Sbjct: 63  KKLPPLILTHNGLLKNSFLSTKIIELPLVINLVHGGDGEDGKLASLLEFYRIAFIGPRIE 122

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVN-RFTMDSQHLI--SPPYVIKPLKGGSSLGII 142
           AS LS +K  +K      G+     +LVN +   ++  LI  + P+++KP   GSSLG+ 
Sbjct: 123 ASVLSYNKYLTKLYAKDLGIKTLDHVLVNEKNRANALDLIGFNFPFIVKPSNAGSSLGVN 182

Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE----LTCGVMGDASLDVTEIAVPKSD 198
           V+K+++ +   L   S++ +  ++LIE ++ G++      C +  D      E    K +
Sbjct: 183 VVKEEKELVYAL--DSAFEYSKEVLIEPFIQGVKEYNLAGCKIKKDLCFSYVE-EPNKQE 239

Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
           F  ++ KY   +      A +   + ++++      +  +    I R DF    +  +V+
Sbjct: 240 FLDFKQKYLDFSRNKAPKASLSNALEEQLKENFKKLYNDLFSGAIIRCDFFV--IENEVY 297

Query: 259 WLEINVQPGMTPVSIFPEMAA 279
             EIN  PG     +F +   
Sbjct: 298 LNEINPIPGSLANYLFDDFKT 318


>gi|108563147|ref|YP_627463.1| D-alanyl-alanine synthetase A [Helicobacter pylori HPAG1]
 gi|122980504|sp|Q1CTD3|DDL_HELPH RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|107836920|gb|ABF84789.1| D-alanine:D-alanine ligase A [Helicobacter pylori HPAG1]
          Length = 347

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 77/321 (23%), Positives = 135/321 (42%), Gaps = 47/321 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDA----------------------GFKVSQIDV 38
             VL GG S E E+S+ S  A    L+D                           +QI  
Sbjct: 3   FCVLFGGASFEHEISIVSAIALKGVLKDRIKYFIFLDENHHFYLIEASNMHSKYFAQIKE 62

Query: 39  DRSVGLVLAH-------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
            +   L+L H             ++  L  N++HG  GEDG + ++LE   I +    I 
Sbjct: 63  KKLPPLILTHKGLLKNSFLGAKIIELPLVINLVHGGDGEDGKLASLLEFYRIAFIGPRIE 122

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVN-RFTMDSQHLI--SPPYVIKPLKGGSSLGII 142
           AS LS +K  +K      G+     +L+N +   ++  LI  + P++IKP   GSSLG+ 
Sbjct: 123 ASVLSYNKYLTKLYAKDLGIKTLDHVLLNEKNRANAMDLINFNFPFIIKPNSAGSSLGVS 182

Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE----LTCGVMGDASLDVTEIAVPKSD 198
           V+K+++ +   L   S++ +  ++LIE ++ G++      C +  D      E    K +
Sbjct: 183 VVKEEKELNYAL--DSAFEYSKEVLIEPFIQGVKEYNLAGCKIKKDFCFSYVE-EPNKQE 239

Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
           F  ++ KY   + T    A +   + ++++      +  +    I R DF    +  +V+
Sbjct: 240 FLDFKQKYLDFSRTKAPKANLSNALEEQLKENFKKLYNDLFDGAIIRCDFFV--IENEVY 297

Query: 259 WLEINVQPGMTPVSIFPEMAA 279
             EIN  PG     +F +   
Sbjct: 298 LNEINPIPGSLANYLFDDFKT 318


>gi|238497161|ref|XP_002379816.1| D-alanine--D-alanine ligase, putative [Aspergillus flavus NRRL3357]
 gi|317146742|ref|XP_001821628.2| D-alanine--D-alanine ligase [Aspergillus oryzae RIB40]
 gi|220694696|gb|EED51040.1| D-alanine--D-alanine ligase, putative [Aspergillus flavus NRRL3357]
          Length = 360

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 86/312 (27%), Positives = 145/312 (46%), Gaps = 42/312 (13%)

Query: 20  KACASALEDAGFKVSQIDVDRSVGLVLA---HLKPDLAFNVLHGNFG--EDGLVQAILEL 74
              ASALE  G +V  +   +++   L+   H + DL FN   G FG   +  V A+LE 
Sbjct: 41  NGVASALESLGHRVVHVPGIKTLVKHLSAEHHKQWDLVFNYSEGVFGSARESQVPALLEA 100

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF--TMDSQHL---ISPPYV 129
            +IP+T S     A  +DK ++K ++    +P  P ++V R    +D   L   +  P  
Sbjct: 101 YQIPFTFSDAATLATGIDKGKTKMLLEHYRIPTSPFVIVPRSGEAVDYAALEDQLPYPLF 160

Query: 130 IKPLKGGSSLGI-----IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
            KP+   +S GI     I+ K+D    ++ L++   +   ++L+E+++DG E T  V+G 
Sbjct: 161 AKPIAASTSNGISPLNKILRKEDLQEVVEDLRAEFKDQ--EILLEKFLDGREFTVAVLGS 218

Query: 185 AS----LDVTEIAV-----PKSDFYSYELKYS----------SLNSTHVLPAKIPLDIYK 225
                 L V+E+        KSD  S +   S           +   H  PA  PL   K
Sbjct: 219 GDRARVLGVSEVTWYNPEGRKSDDLSVDFATSFSKAGRGVGHDMGHVHADPAD-PL--VK 275

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP-VSIFPEMAAYAGYS 284
           E+  +   A+QA+GC+   R D   D     V  +E+N   G+ P  S+F  +A   G  
Sbjct: 276 EIAEIGLSAYQALGCKDGGRVDIRMDGAVPCV--IEVNPIFGLRPDHSLFTWIAKNNGME 333

Query: 285 FRELLLWMVEDA 296
           +++++  +V++A
Sbjct: 334 YQDIIAEIVDNA 345


>gi|217032140|ref|ZP_03437639.1| hypothetical protein HPB128_186g6 [Helicobacter pylori B128]
 gi|298736440|ref|YP_003728966.1| D-alanine-D-alanine ligase [Helicobacter pylori B8]
 gi|216946130|gb|EEC24739.1| hypothetical protein HPB128_186g6 [Helicobacter pylori B128]
 gi|298355630|emb|CBI66502.1| D-alanine-D-alanine ligase [Helicobacter pylori B8]
          Length = 347

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 78/309 (25%), Positives = 132/309 (42%), Gaps = 47/309 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASAL-----------EDAGFKV-----------SQIDV 38
             VL GG S E E+S+ S  A   AL           ED  F +           +QI  
Sbjct: 3   FCVLFGGASFEHEISIVSAIALKEALKDRIKHFIFLDEDHHFYLIEASNMHSKYFAQIKE 62

Query: 39  DRSVGLVLAH-------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
            +   L+L H             ++  L  N++HG  GEDG + ++LE   I +    + 
Sbjct: 63  KKLPPLILTHNGLLKNSFLGAKIIELPLVINLVHGGDGEDGKLASLLEFYRIAFIGPRVE 122

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILV---NRFTMDSQHLISPPYVIKPLKGGSSLGII 142
           AS LS +K  +K   ++ GV     +L+   NR         + P++IKP   GSSLG+ 
Sbjct: 123 ASVLSYNKYLTKLYANNLGVKTLGHVLLNEKNRANALDLMNFNFPFIIKPNSAGSSLGVS 182

Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE----LTCGVMGDASLDVTEIAVPKSD 198
           V+K+++ +   L   S++ +  ++LIE ++ G++      C +  D      E    K +
Sbjct: 183 VVKEEKELIYAL--DSAFEYSKEVLIEPFIQGVKEYNLAGCKIKKDFCFSYVE-EPNKQE 239

Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
           F  ++ KY   +      A +   + ++++      +  +    I R DF    +  KV+
Sbjct: 240 FLDFKQKYLDFSRAKSPKANLSSALEEQLKENFKKLYNDLFDGAIIRCDFFV--IENKVY 297

Query: 259 WLEINVQPG 267
             EIN  PG
Sbjct: 298 LNEINPIPG 306


>gi|83769491|dbj|BAE59626.1| unnamed protein product [Aspergillus oryzae]
          Length = 359

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 86/312 (27%), Positives = 145/312 (46%), Gaps = 42/312 (13%)

Query: 20  KACASALEDAGFKVSQIDVDRSVGLVLA---HLKPDLAFNVLHGNFG--EDGLVQAILEL 74
              ASALE  G +V  +   +++   L+   H + DL FN   G FG   +  V A+LE 
Sbjct: 41  NGVASALESLGHRVVHVPGIKTLVKHLSAEHHKQWDLVFNYSEGVFGSARESQVPALLEA 100

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF--TMDSQHL---ISPPYV 129
            +IP+T S     A  +DK ++K ++    +P  P ++V R    +D   L   +  P  
Sbjct: 101 YQIPFTFSDAATLATGIDKGKTKMLLEHYRIPTSPFVIVPRSGEAVDYAALEDQLPYPLF 160

Query: 130 IKPLKGGSSLGI-----IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
            KP+   +S GI     I+ K+D    ++ L++   +   ++L+E+++DG E T  V+G 
Sbjct: 161 AKPIAASTSNGISPLNKILRKEDLQEVVEDLRAEFKDQ--EILLEKFLDGREFTVAVLGS 218

Query: 185 AS----LDVTEIAV-----PKSDFYSYELKYS----------SLNSTHVLPAKIPLDIYK 225
                 L V+E+        KSD  S +   S           +   H  PA  PL   K
Sbjct: 219 GDRARVLGVSEVTWYNPEGRKSDDLSVDFATSFSKAGRGVGHDMGHVHADPAD-PL--VK 275

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP-VSIFPEMAAYAGYS 284
           E+  +   A+QA+GC+   R D   D     V  +E+N   G+ P  S+F  +A   G  
Sbjct: 276 EIAEIGLSAYQALGCKDGGRVDIRMDGAVPCV--IEVNPIFGLRPDHSLFTWIAKNNGME 333

Query: 285 FRELLLWMVEDA 296
           +++++  +V++A
Sbjct: 334 YQDIIAEIVDNA 345


>gi|302035853|ref|YP_003796175.1| d-alanine-d-alanine ligase [Candidatus Nitrospira defluvii]
 gi|300603917|emb|CBK40249.1| D-alanine-D-alanine ligase [Candidatus Nitrospira defluvii]
          Length = 340

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 81/289 (28%), Positives = 132/289 (45%), Gaps = 25/289 (8%)

Query: 24  SALEDAGFKVSQIDVDRSVGLVLAHL---KPDLAFNVLH---GNFGEDGLVQAILELLEI 77
           S L   G +V  + V   + ++ A +   KP +AFN+L    G    D  V + LEL+ I
Sbjct: 38  STLRKLGHEVQPLGVKSDLEVIRAAVEDWKPHIAFNLLEEFDGRAVYDQNVVSYLELMRI 97

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP-PYVIKPLKGG 136
           PYT        L+ DK  +KQV+S   +P    ++V    M  +    P P ++K +   
Sbjct: 98  PYTGCNPRGLMLARDKALAKQVMSYHRIPYPEFMVVPLHRMVRRPKYLPFPLIVKSISEE 157

Query: 137 SSLGII---VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD---VT 190
           +SLGI    ++  D+ +  + +     N G   L+E+Y++G EL  GVMG+A L    V 
Sbjct: 158 ASLGISQASIVDDDEKL-RERVAFIHDNVGTGALVERYIEGRELYVGVMGNAHLQVFPVW 216

Query: 191 EIAVPK---------SDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGC 240
           E+ + K         ++   +  KY          A+ +P  +   VQ LA   ++A+G 
Sbjct: 217 ELVMDKMPEEARRIATERVKWSRKYQDKYGICSCEARNLPDGVVDHVQHLAKRVYRALGL 276

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
            G +R D   D     V+ LE N  P +     F + A  A  ++++LL
Sbjct: 277 SGYARIDMRMDQ-DGNVYVLEANPNPQIASGEDFADSAEKADLAYKDLL 324


>gi|208434649|ref|YP_002266315.1| D-alanine: D-alanine ligase A [Helicobacter pylori G27]
 gi|208432578|gb|ACI27449.1| D-alanine: D-alanine ligase A [Helicobacter pylori G27]
          Length = 349

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 76/321 (23%), Positives = 135/321 (42%), Gaps = 47/321 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDA----------------------GFKVSQIDV 38
             VL GG+S E E+S+ S  A    L+D                           +QI  
Sbjct: 5   FCVLFGGVSFEHEISIVSAIALKGVLKDRIKYFLFLDENHHFYLIEESNMHSKYFAQIKE 64

Query: 39  DRSVGLVLAH-------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
            +   L+L H             ++  L  N++HG  GEDG + ++LE   I +    I 
Sbjct: 65  KKLPPLILTHNGLLKNSFLGAKIIELPLVINLVHGGDGEDGKLASLLEFYRIAFIGPRIE 124

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVN-RFTMDSQHLI--SPPYVIKPLKGGSSLGII 142
           AS LS +K  +K      GV     +L+N +   ++  LI  + P+++KP   GSSLG+ 
Sbjct: 125 ASVLSYNKYLTKLYAKDLGVKTLDYVLLNEKNRANALDLIEFNFPFIVKPSNAGSSLGVN 184

Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE----LTCGVMGDASLDVTEIAVPKSD 198
           V+K+++ +   L   S++ +  ++LIE ++ G++      C +  D      E    K +
Sbjct: 185 VVKEEKELIYAL--DSAFEYSKEVLIEPFIQGVKEYNLAGCKIKKDFCFSYVE-EPSKQE 241

Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
           F  ++ KY   +      A +   + ++++      +  +    I R DF    +  +V+
Sbjct: 242 FLDFKQKYLDFSRNKAPKANLSNALEEQLKENFKKLYNDLFSGAIIRCDFFV--IENEVY 299

Query: 259 WLEINVQPGMTPVSIFPEMAA 279
             EIN  PG     +F +   
Sbjct: 300 LNEINPIPGSLANYLFDDFKT 320


>gi|77165687|ref|YP_344212.1| hypothetical protein Noc_2222 [Nitrosococcus oceani ATCC 19707]
 gi|254434399|ref|ZP_05047907.1| hypothetical protein NOC27_1330 [Nitrosococcus oceani AFC27]
 gi|76884001|gb|ABA58682.1| conserved hypothetical protein [Nitrosococcus oceani ATCC 19707]
 gi|207090732|gb|EDZ68003.1| hypothetical protein NOC27_1330 [Nitrosococcus oceani AFC27]
          Length = 354

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 78/316 (24%), Positives = 137/316 (43%), Gaps = 33/316 (10%)

Query: 8   ISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGL 67
            S+E   ++   K     L D  ++ + +D   ++   L    PD   N     +     
Sbjct: 31  FSTEDLEAIDRAKEALGELRD--YQFTYLDNHSALLPQLIADPPDFVLNFCDTGYKNRAR 88

Query: 68  ----VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
               V A LE+L IPY+ +      L  DK   + V  + GVPV     V+   ++   L
Sbjct: 89  QELHVPAFLEMLGIPYSGARPACLGLCYDKSLVRSVAKTHGVPVPAETFVHGNDLNGAIL 148

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH-------GDQLLIEQYVDGIE 176
            + P +IKP +G  S+GI     + S+  D  Q+ ++ +          LLI++++ G E
Sbjct: 149 KNFPALIKPNRGDGSVGIT----ENSLVYDEPQAHAYINKLAMEFPNCDLLIQEFLPGDE 204

Query: 177 LTCGVMGDASLDVTEIAVPKSDF-------------YSYELKYSSLNSTHVLPAKIPLD- 222
            + G++G+ S     + + K D+             Y+ ++  +S   T +  AK  +D 
Sbjct: 205 YSVGLLGNPSSGFKILPILKVDYSRLAAHRLPPILAYASKVDSASPYWTDIQYAKAAMDE 264

Query: 223 -IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYA 281
            + + +     L  + +GCR  +R DF  D +  +V  LE+N  P          MA +A
Sbjct: 265 GLRQRLVGYCRLLFERLGCRDYARFDFRAD-VQGEVKLLEVNPNPAWCWDGKLNLMAGFA 323

Query: 282 GYSFRELLLWMVEDAS 297
           GY + ELL W+++ A 
Sbjct: 324 GYRYGELLEWILQAAQ 339


>gi|26452707|dbj|BAC43436.1| unknown protein [Arabidopsis thaliana]
          Length = 844

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 94/380 (24%), Positives = 154/380 (40%), Gaps = 83/380 (21%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVS--QIDVD------------------- 39
           + ++ GG S+ER +SL+S ++    ++  G  VS   ID D                   
Sbjct: 80  VGLICGGPSAERGISLNSARSVLDHIQGDGINVSCYYIDPDLKAFAISSAQVYSNTPSDF 139

Query: 40  -----------RSVGLVLAHL--KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
                       S+  +  HL    D+ F V+HG FGEDG +Q +LE   IP+  +G   
Sbjct: 140 DFKLESLAQGFSSLSELAEHLVSAVDIVFPVIHGRFGEDGGIQELLESHNIPFVGTGSRE 199

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNR-----------FTMDSQHLISPPYVIKPLKG 135
              + DK  +   +   G    P+ LV             FT +   L     V+KP K 
Sbjct: 200 CFRAFDKYEASLELKELGFMTVPNYLVQGTGVDKSEIALWFTDNQLDLEMGKVVVKPAKA 259

Query: 136 GSSLGI-IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDV---- 189
           GSS+G+ +    + SI    L     +  D++++E ++ D  E T  V+   S  V    
Sbjct: 260 GSSIGVKVAFGVNDSIKKATLILEGID--DRVVVEVFIEDAYEFTAIVLDVGSGSVCHPV 317

Query: 190 ----TEIAV-------PKSD-FYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
               TE+ +       PK +  + Y  KY  +   T+  P + P+ + K ++  A L  Q
Sbjct: 318 VLMPTEVQLQFHGIGDPKENAIFDYRRKYLPTQQVTYHTPPRFPIHVIKSIREEASLIFQ 377

Query: 237 AIGCRGISRSDFLF--------DPLSRK--------VFWLEINVQPGMTPVSIFPEMAAY 280
            +G R  +R D  +         P+S          + + +IN+  GM   S   + A+ 
Sbjct: 378 KLGLRDFARIDGWYLAPNSNLSSPVSETLGGTKSGDIIFTDINLISGMKQTSFLFQQASK 437

Query: 281 AGYSFRELLLWMVEDASCLR 300
            G+S   +L  +V  A C R
Sbjct: 438 VGFSHSNILRTIVHRA-CSR 456



 Score = 45.8 bits (107), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 43/77 (55%), Gaps = 3/77 (3%)

Query: 29  AGFKVS-QIDVDRSVGLVLAHLKPDLA--FNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
           AGF ++ ++    S+   + H K   A  F  +HG  GEDG +Q +LE   + YT  G+L
Sbjct: 597 AGFDITDELPRKYSLKEWIKHAKEAQATVFIAVHGGIGEDGTLQGLLEDEGVSYTGPGVL 656

Query: 86  ASALSMDKMRSKQVVSS 102
           AS   MDK+ + Q +S+
Sbjct: 657 ASRTCMDKVMTSQALSN 673


>gi|189502683|ref|YP_001958400.1| hypothetical protein Aasi_1367 [Candidatus Amoebophilus asiaticus
           5a2]
 gi|189498124|gb|ACE06671.1| hypothetical protein Aasi_1367 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 421

 Score = 77.4 bits (189), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 72/297 (24%), Positives = 132/297 (44%), Gaps = 66/297 (22%)

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV 105
           LAHL  D  F  LHG  GEDG +QAILE   +PY  SG+  ++L++DK  + + +   G+
Sbjct: 112 LAHLV-DSVFIALHGRPGEDGTLQAILEQHGLPYNGSGVTTTSLTIDKFATNRFLHKHGI 170

Query: 106 PVCPSILVNRFTMDSQHLISP------------PYVIKPLKGGSSLGII----------- 142
            V    +V   T+D     +P            P+++KP+  G S+ +            
Sbjct: 171 YVANQAVV---TIDQWKNNTPATIETIEATFKYPFIVKPVDDGCSVAVFKIQNKDMLIAY 227

Query: 143 ---VIKKDQSIPLDLLQ------SSSWNHGDQLLIEQYVDG------IELTCGVM----- 182
              + + D + P +L Q      ++++ +  Q L+E  ++       +E+T G++     
Sbjct: 228 AENIFRADSNQPTNLTQVLGLKPNAAFPNYQQFLVEDLIEKGTATHFLEITGGLLTHLDE 287

Query: 183 -GDASLDVTEIA--VPKSDFYSYELKYSSLNSTHVLPAK----------IPLDIYKEVQR 229
            G+   ++ E +  V   D  S E K+ +    ++ PA+          I   + +++Q+
Sbjct: 288 QGNRQYEMFEPSEVVATGDILSLEEKFLAGEGQNITPARFHPDPTTNLAISTKVKEDLQK 347

Query: 230 LAFLAHQAIGCRGISRSDFLFD--PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
           +A    Q +   G +R D +    P   + + +EIN  P +TP +      A  GY+
Sbjct: 348 VA----QLVNIEGYARIDAMVKIYPTHIETWIIEINTLPALTPATCIFHQCAINGYT 400


>gi|210134940|ref|YP_002301379.1| D-alanyl-alanine synthetase A [Helicobacter pylori P12]
 gi|226696388|sp|B6JLX1|DDL_HELP2 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|210132908|gb|ACJ07899.1| D-alanine:D-alanine ligase A [Helicobacter pylori P12]
          Length = 347

 Score = 77.4 bits (189), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 76/309 (24%), Positives = 132/309 (42%), Gaps = 47/309 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDA----------------------GFKVSQIDV 38
             VL GG S E E+S+ S  A    L+D                           +QI  
Sbjct: 3   FCVLFGGASFEHEISIVSAIALKEVLKDRIKHFIFLDENHHFYLIEASNMHSKYFAQIKE 62

Query: 39  DRSVGLVLAH-------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
            +   L+LAH             ++  L  N++HG  GEDG + ++LE   I +    I 
Sbjct: 63  KKLPPLILAHNGLLKNSFLGTKIIELPLVINLVHGGDGEDGKLASLLEFYRIAFIGPRIE 122

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVN-RFTMDSQHLI--SPPYVIKPLKGGSSLGII 142
           AS LS +K  +K      GV     +L+N +   ++  LI  + P+++KP   GSSLG+ 
Sbjct: 123 ASVLSYNKYLTKLYAKDLGVKTLDYVLLNEKNRANALDLIKFNFPFIVKPSNAGSSLGVN 182

Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE----LTCGVMGDASLDVTEIAVPKSD 198
           V+K+++ +   L   S++ +  ++LIE ++ G++      C +  D      E    K +
Sbjct: 183 VVKEEKELVYAL--DSAFEYSKEVLIEPFIQGVKEYNLAGCKIKTDFCFSYIE-EPNKQE 239

Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
           F  ++ KY   +      A +   + ++++      +  +    I R DF    +  +V+
Sbjct: 240 FLDFKQKYLDFSRNKAPKANLSNALEEQLKENFKKLYNDLFSGAIIRCDFFV--IENEVY 297

Query: 259 WLEINVQPG 267
             EIN  PG
Sbjct: 298 LNEINPIPG 306


>gi|170727019|ref|YP_001761045.1| D-alanyl-alanine synthetase A [Shewanella woodyi ATCC 51908]
 gi|169812366|gb|ACA86950.1| D-alanine--D-alanine ligase [Shewanella woodyi ATCC 51908]
          Length = 359

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 63/249 (25%), Positives = 116/249 (46%), Gaps = 14/249 (5%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D     +HG  GE G +Q+  +L+++P+      +S+   +K+ +K   S+ GVP  P I
Sbjct: 103 DYVIPCIHGFPGETGDIQSYFDLIKLPFFGCDSESSSNCFNKVTAKMWFSALGVPNTPYI 162

Query: 112 LVNRFTMDS-----QHLISPPYV-IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
            +N    +S     Q L +   + IK    GSS+G   +     +   L Q+ S+     
Sbjct: 163 FLNELNQESIAQTKQALENWGSIFIKAASQGSSVGCYRVDSQDELVSSLEQAFSF--SPY 220

Query: 166 LLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYSSLNSTHV-LPAKIP 220
           +++E+ ++  EL       +  +  T   EI    + FYS++ KY++ +     + A + 
Sbjct: 221 VIVEKTINARELEVAAYELNGEIVATKPGEIICASNTFYSFDEKYAANSKAETKVEADVS 280

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280
            ++ +++Q  A    + +    +SR DF       ++   EIN  PG+TP+S+FP+M   
Sbjct: 281 EEVAQQIQAYAIKVFKGMKLSHLSRIDFFLTE-DNEILLNEINTFPGLTPISMFPKMLQN 339

Query: 281 AGYSFRELL 289
            G  F   L
Sbjct: 340 HGDDFTHYL 348


>gi|308184522|ref|YP_003928655.1| D-alanyl-alanine synthetase A [Helicobacter pylori SJM180]
 gi|308060442|gb|ADO02338.1| D-alanyl-alanine synthetase A [Helicobacter pylori SJM180]
          Length = 347

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 62/234 (26%), Positives = 110/234 (47%), Gaps = 12/234 (5%)

Query: 53  LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
           L  N++HG  GEDG + ++LE   I +    I AS LS +K  +K      GV     IL
Sbjct: 90  LVINLVHGGDGEDGKLASLLEFYRIAFIGPRIEASVLSYNKYLTKLYAKDLGVKTLDYIL 149

Query: 113 VN-RFTMDSQHLI--SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
           +N +   ++  LI  + P+++KP   GSSLG+ V+K+++ +   L   S++ +  ++LIE
Sbjct: 150 LNEKNRANALDLIGFNFPFIVKPSNAGSSLGVNVVKEEKELNYAL--DSAFEYSKEVLIE 207

Query: 170 QYVDGIE----LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
            ++ G++      C +  D      E    K +F  ++ KY   + T    A +   + K
Sbjct: 208 PFIQGVKEYNLAGCKIKKDFCFSYIE-EPNKQEFLDFKQKYLDFSRTKAPKANLSNALEK 266

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279
           +++      +  +    I R DF    +  +V+  EIN  PG     +F +   
Sbjct: 267 QLKENFKKLYNDLFDGAIIRCDFFV--IENEVYLNEINPIPGSLANYLFDDFKT 318


>gi|297833634|ref|XP_002884699.1| D-alanine--D-alanine ligase family [Arabidopsis lyrata subsp.
           lyrata]
 gi|297330539|gb|EFH60958.1| D-alanine--D-alanine ligase family [Arabidopsis lyrata subsp.
           lyrata]
          Length = 943

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 94/385 (24%), Positives = 154/385 (40%), Gaps = 93/385 (24%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVS--QIDVD------------------- 39
           + ++ GG S+ER +SL+S ++    ++  G  VS   ID D                   
Sbjct: 81  VGLICGGPSAERGISLNSARSVLDHIQGDGISVSCYYIDPDLKAFAISSAQVYSNTPSDF 140

Query: 40  -----------RSVGLVLAHL--KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
                       S+     HL    D+ F V+HG FGEDG +Q +LE   IP+  +G   
Sbjct: 141 DFKLESLAQGFSSLSKFAEHLVSAVDIVFPVIHGRFGEDGGIQELLESQNIPFVGTGSRE 200

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNR-----------FTMDSQHLISPPYVIKPLKG 135
              + DK  +   +   G    P+ LV             FT +   L     V+KP K 
Sbjct: 201 CIRAFDKYEASLELKELGFMTVPNYLVQGTEVDKSEIAQWFTDNQLDLEMGKVVVKPAKA 260

Query: 136 GSSLGIIV-------IKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDAS- 186
           GSS+G+ V       IKK   + L+ +        D++++E ++ D  E T  V+   S 
Sbjct: 261 GSSIGVKVAFGVNDSIKKAIELILEGID-------DRVVVEVFIEDAYEFTAIVLDVGSG 313

Query: 187 -------LDVTEIA--------VPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRL 230
                  L  TE+         + ++  + Y  KY  +   T+  P + P+ + K ++  
Sbjct: 314 SGCHPVVLMPTEVQLQFHGSGDLQENAIFDYRRKYLPTQQVTYHTPPRFPIHVIKSIREE 373

Query: 231 AFLAHQAIGCRGISR---------------SDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275
           A L  + +G R  +R               S+ L  P S  + + +IN+  GM   S   
Sbjct: 374 ASLIFKKLGLRDFARIDGWYLAPNSNLSSASETLGGPESGDIIFTDINLISGMEQTSFLF 433

Query: 276 EMAAYAGYSFRELLLWMVEDASCLR 300
           + A+  G+S   +L  +V  A C R
Sbjct: 434 QQASKVGFSHSNILRTVVHRA-CSR 457



 Score = 63.9 bits (154), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 78/302 (25%), Positives = 119/302 (39%), Gaps = 72/302 (23%)

Query: 58  LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN-RF 116
           +HG  GEDG +QA+LE   + YT  G+LAS   MDK+ + Q +S        +I  + R 
Sbjct: 636 MHGGIGEDGTLQALLEDEGVSYTGPGVLASRTCMDKVMTSQALSHLSELGIHTISKDVRR 695

Query: 117 TMDSQHLISP-------------PYVIKPLKGGSSLGI--IVIKKDQSIPLDLLQSS--- 158
           T D  H   P                +KP K G S G+  +   +D ++ +  L+     
Sbjct: 696 TEDIMHETIPNVWDELISKFQCLTLCVKPAKDGCSTGVARLCCSEDLAVYVQALKDCLLR 755

Query: 159 ------SWNHG---------DQLLIEQYVDG---------------------IELTCGVM 182
                 S  HG         + L+ E +V+                      +E+T GV+
Sbjct: 756 IPPNTLSKTHGTIEMPNPTPEFLIFEPFVETDEIIVSSKVKQQLSWKGRRRWVEMTVGVI 815

Query: 183 GDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV-----QRLAFL 233
           G      SL  +       D  S E K+      ++ P   P  + KE      QR+  +
Sbjct: 816 GKRGSMHSLSPSLTVKESGDILSLEEKFQGGTGINLTPPP-PTIMSKEALERCKQRIELI 874

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA------AYAGYSFRE 287
           A + +G  G SR D      + +V  +E+N  PGMTP ++  + A       Y    FR 
Sbjct: 875 A-ETLGLEGFSRIDAFVHVETGEVLVIEVNTVPGMTPSTVLIQQALAEQPPMYPPQFFRT 933

Query: 288 LL 289
           LL
Sbjct: 934 LL 935


>gi|190359231|sp|B1KI99|DDL_SHEWM RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
          Length = 335

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 63/249 (25%), Positives = 117/249 (46%), Gaps = 14/249 (5%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D     +HG  GE G +Q+  +L+++P+      +S+   +K+ +K   S+ GVP  P I
Sbjct: 79  DYVIPCIHGFPGETGDIQSYFDLIKLPFFGCDSESSSNCFNKVTAKMWFSALGVPNTPYI 138

Query: 112 LVNRFTMDS-----QHLISPPYV-IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
            +N    +S     Q L +   + IK    GSS+G   +     +   L Q+ S++    
Sbjct: 139 FLNELNQESIAQTKQALENWGSIFIKAASQGSSVGCYRVDSQDELVSSLEQAFSFS--PY 196

Query: 166 LLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYSSLNSTHV-LPAKIP 220
           +++E+ ++  EL       +  +  T   EI    + FYS++ KY++ +     + A + 
Sbjct: 197 VIVEKTINARELEVAAYELNGEIVATKPGEIICASNTFYSFDEKYAANSKAETKVEADVS 256

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280
            ++ +++Q  A    + +    +SR DF       ++   EIN  PG+TP+S+FP+M   
Sbjct: 257 EEVAQQIQAYAIKVFKGMKLSHLSRIDFFLTE-DNEILLNEINTFPGLTPISMFPKMLQN 315

Query: 281 AGYSFRELL 289
            G  F   L
Sbjct: 316 HGDDFTHYL 324


>gi|317012549|gb|ADU83157.1| D-alanyl-alanine synthetase A [Helicobacter pylori Lithuania75]
          Length = 347

 Score = 76.6 bits (187), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 76/321 (23%), Positives = 136/321 (42%), Gaps = 47/321 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDA----------------------GFKVSQIDV 38
             VL GG S E E+S+ S  A    L+D                           +QI  
Sbjct: 3   FCVLFGGASFEHEISIVSAIALKGVLKDRIKYFIFLDENHHFYLIEESNMHSKYFAQIKE 62

Query: 39  DRSVGLVLAH-------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
            +   L+L H             ++  L  N++HG  GEDG + ++LE   I +    + 
Sbjct: 63  KKLPPLILTHNGLLKNSFLGAKIIELPLVINLVHGGDGEDGKLASLLEFYRIAFIGPRVE 122

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVN-RFTMDSQHLI--SPPYVIKPLKGGSSLGII 142
           AS LS +K  +K      G+     +L+N +   ++ +LI  + P++IKP   GSSLG+ 
Sbjct: 123 ASVLSYNKYLTKLYAKDLGIKALDHVLLNEKNRANALNLIGFNFPFIIKPNSAGSSLGVN 182

Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE----LTCGVMGDASLDVTEIAVPKSD 198
           V+K+++ +   L   S++ +  ++LIE ++ G++      C +  D      E    K +
Sbjct: 183 VVKEEKELIYAL--DSAFEYSKEVLIEPFIQGVKEYNLAGCKIKKDFCFSYVE-EPNKQE 239

Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
           F  ++ KY   + T    A +   + ++++      +  +    I R DF    +  +V+
Sbjct: 240 FLDFKQKYLDFSRTKAPKANLSNALEEQLKENFKKLYNDLFDGAIIRCDFFV--IENEVY 297

Query: 259 WLEINVQPGMTPVSIFPEMAA 279
             EIN  PG     +F +   
Sbjct: 298 LNEINPIPGSLAHYLFDDFKT 318


>gi|302814744|ref|XP_002989055.1| hypothetical protein SELMODRAFT_184333 [Selaginella moellendorffii]
 gi|300143156|gb|EFJ09849.1| hypothetical protein SELMODRAFT_184333 [Selaginella moellendorffii]
          Length = 857

 Score = 76.6 bits (187), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 70/281 (24%), Positives = 121/281 (43%), Gaps = 36/281 (12%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+ F V+HG FGEDG +Q +LE   IP+  +G  A+  + DK  + + +S  G    PS 
Sbjct: 109 DIVFPVIHGKFGEDGGLQELLESAGIPFVGTGSSAARCAFDKYEAAKELSRFGFVTIPSF 168

Query: 112 LVNRFTMDSQHLI-----------SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160
           L++   +D   L+           S   V+KP K GSS+G+ V      +  D       
Sbjct: 169 LIDSPEIDKAALVEWFKANDLNPSSDRVVVKPAKSGSSIGVTVAHGLDEVIRDAETLLKE 228

Query: 161 NHGDQLLIEQYVDG-IELTCGVMGDAS--------LDVTEIAVPKSD-------FYSYEL 204
              D++++E ++ G  E T  ++   S        L  TE+ +  +D        ++Y  
Sbjct: 229 GIDDRIVVEVFLQGCTEFTVIILDTGSGEQVQPVALLPTEVELLHADGQSIGEKIFNYRR 288

Query: 205 KY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK------- 256
           KY  +   ++  P + P+   + ++  A      +  R  +R D    P S         
Sbjct: 289 KYLPTRQVSYHTPPRFPVQTIQSIRSGASKLFTLLNLRDFARVDGWLLPPSSSFNKSNDF 348

Query: 257 -VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            V + ++N+  GM   S   + AA  G S R++L  ++  A
Sbjct: 349 LVVFSDVNLVSGMEQTSFLFQQAAQVGLSHRDVLRLVLNRA 389



 Score = 53.5 bits (127), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 75/322 (23%), Positives = 129/322 (40%), Gaps = 73/322 (22%)

Query: 24  SALEDAGFKV-----SQIDVDRSVGLVLAHLKPD--LAFNVLHGNFGEDGLVQAILELLE 76
           S L  +G KV     S +    S+   + H K +  + F  +HG+ GE+G++Q +LE   
Sbjct: 511 SELSSSGSKVDYNVGSGVPTKLSMSEWIQHAKDEDAIVFIAVHGDIGENGILQEMLEAKG 570

Query: 77  IPYTHSGILASALSMDKMRSKQVV---SSCGVPVCPSILVNRFTM-----DSQHLI---- 124
           IP+T SG+ AS + MDK  +   +   SS GV     ++     +     D++ L     
Sbjct: 571 IPFTGSGVKASRICMDKAVTGHTISPLSSNGVYSAQRVVYKTAELLHDCGDNRQLWLSLQ 630

Query: 125 ----SPPYVIKPLKGGSSLGI--IVIKKDQSIPLDLLQ---------SSSWNHG------ 163
                    +KP   G S G+  +   +D ++ L  L+         S    HG      
Sbjct: 631 DKLEDSSICVKPAADGCSTGVARLCCARDLTVYLTALKEKLPRLLPGSLGKPHGIIELPT 690

Query: 164 ---DQLLIEQYVDG-------------------IELTCGVMGDA----SLDVTEIAVPKS 197
              D L+ E ++                     +E+T GV+G      +L  +       
Sbjct: 691 TIPDSLIFEPFIQTDDILVCEESQIAWEGKHRWVEITAGVIGKKGAMHALHPSITLKESG 750

Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEV-----QRLAFLAHQAIGCRGISRSDFLFDP 252
           D  S E K+      ++ P   PL   +E      +R+  +A+  +   G +R D   + 
Sbjct: 751 DILSLEEKFQGGTGVNLTPPP-PLICSEEAVRSCRERIELVAN-TLQLEGFARIDAFMNV 808

Query: 253 LSRKVFWLEINVQPGMTPVSIF 274
            + +V  +E+N  PGMTP ++ 
Sbjct: 809 DTGEVIVIEVNTVPGMTPSTVL 830


>gi|298378694|ref|ZP_06988578.1| D-alanine-D-alanine ligase [Escherichia coli FVEC1302]
 gi|298281028|gb|EFI22529.1| D-alanine-D-alanine ligase [Escherichia coli FVEC1302]
          Length = 96

 Score = 76.6 bits (187), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 42/91 (46%), Positives = 56/91 (61%)

Query: 1  MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
          +AVL+GG S+EREVSL+SG A  + L + G     +D        L  +     F  LHG
Sbjct: 5  IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64

Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSM 91
            GEDG +Q +LEL+ +PYT SG++ASALSM
Sbjct: 65 RGGEDGTLQGMLELMGLPYTGSGVMASALSM 95


>gi|58201631|gb|AAW66892.1| vancomycin resistance protein B [Enterococcus faecium]
          Length = 166

 Score = 76.6 bits (187), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 44/133 (33%), Positives = 71/133 (53%), Gaps = 2/133 (1%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+AF VLHG  GEDG +Q +  L  IPY    I +SA  MDK  +  +  + G+ V    
Sbjct: 11  DVAFPVLHGKCGEDGAIQGLFVLSGIPYVGCDIQSSAACMDKSLAYILTKNAGIAVPEFQ 70

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
           ++++        ++ P  +KP + GSS G  V K + +  L+    ++  +  ++LIEQ 
Sbjct: 71  MIDKGDKPEAGALTYPVFVKPARSGSSFG--VTKVNGTEELNAAIEAAGQYDGKILIEQA 128

Query: 172 VDGIELTCGVMGD 184
           + G E+ C VMG+
Sbjct: 129 ISGCEVGCAVMGN 141


>gi|189083033|sp|A8Z6L3|DDL_CAMC1 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|158604979|gb|ABW74793.1| D-alanine--D-alanine ligase (D-alanylalanine
           synthetase)(D-Ala-D-Ala ligase) [Campylobacter concisus
           13826]
          Length = 346

 Score = 76.6 bits (187), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 64/236 (27%), Positives = 106/236 (44%), Gaps = 19/236 (8%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+  N++HG  GEDG + A+ E   + Y    + ASALS +K  +K +    GV      
Sbjct: 88  DVIINLIHGMDGEDGKIAALFEFYGVKYIGPRLEASALSYNKELTKFLAQKAGVKALDYE 147

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
           ++ R +    H    P ++KP + GSS+G+ V+  D    L   +  ++     +L+E +
Sbjct: 148 MLTRQSEPKFHY---PIILKPARLGSSIGVSVVHDDSE--LAYAKDVAFEFDKDVLVEPF 202

Query: 172 VDGIE----LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL-NSTHVLPAKIPLDIYKE 226
           + G++      C + G     + E    K +F  YE KY S  N   V  A+I  ++   
Sbjct: 203 IKGVKEYNLAGCRIDGKIKFSIVE-EPKKKEFLDYEQKYLSFSNENKVKEAEISEEL--- 258

Query: 227 VQRLAFLAHQAIGC---RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279
            Q+L F   +   C     I R DF    +  +V+  EIN  PG     +F +  +
Sbjct: 259 KQKLKFNFSKIYDCGFDGAIIRCDFFV--IDDEVYLNEINPNPGSLANYLFEDFES 312


>gi|161528516|ref|YP_001582342.1| D-alanine--D-alanine ligase [Nitrosopumilus maritimus SCM1]
 gi|160339817|gb|ABX12904.1| D-alanine--D-alanine ligase [Nitrosopumilus maritimus SCM1]
          Length = 743

 Score = 76.3 bits (186), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 74/309 (23%), Positives = 141/309 (45%), Gaps = 19/309 (6%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVG--------LVLAHLKPDLAFNVL 58
           G++++   S  + +  A ALE  G  V  I+ D  +          V++  KP + FN+ 
Sbjct: 43  GMTTKEHYSSKAVERVARALEKGGHSVKVIEGDIHLADELREFMPKVVSGEKPGMVFNMA 102

Query: 59  HGNFGEDGL--VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116
           +G  G++    V A++E+L IPY  SG    A+  DK+ +K V+    +P  P   V + 
Sbjct: 103 YGIQGQNRYTHVPAMMEMLGIPYIGSGPAGHAIVQDKVMTKIVLQKNNIP-TPGFWVFKT 161

Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
             D    +  P ++KP    +S+G+ V+     +  + ++     +   +L+EQ++ G E
Sbjct: 162 PDDKFDDLVFPVIVKPKLESTSMGMEVVDNWDDL-RNAVKVQIEKYQQDILVEQFISGRE 220

Query: 177 LTCGVMGDAS----LDVTEIAVPKSD-FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
              G++G++     L + EI +   D   +   K  +       PAK+  +  + ++++ 
Sbjct: 221 FAVGLIGNSPNIEVLPIVEINLGDPDKIQTISDKKKTGGVDKTCPAKLSKEKTEYMKKIC 280

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A  A+G    +R DF  D     ++ LE+N    +         A  AGY++ E L+ 
Sbjct: 281 IDAFTALGLNDYTRVDFRMDK-DENIYILELNSMASLGMGGSLFYAAKTAGYTY-ESLIN 338

Query: 292 MVEDASCLR 300
            + D + +R
Sbjct: 339 KILDVATMR 347


>gi|307322537|ref|ZP_07601883.1| D-alanine--D-alanine ligase [Sinorhizobium meliloti AK83]
 gi|306891819|gb|EFN22659.1| D-alanine--D-alanine ligase [Sinorhizobium meliloti AK83]
          Length = 361

 Score = 76.3 bits (186), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 74/265 (27%), Positives = 122/265 (46%), Gaps = 32/265 (12%)

Query: 46  LAHL-KPD--LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS 102
           LAHL + D    F++L G  GEDG +QA+ +  +IP +    +++ L+ DK     V + 
Sbjct: 78  LAHLLRSDGVFVFSLLQGQDGEDGQIQALAQFYDIPGSFGDKVSAMLATDKYLQGIVANR 137

Query: 103 CGVPVCPSILVNRFTMDSQ-------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
               + P   V+    + +         ++ P V+KP   G S    + +    +  D L
Sbjct: 138 LCPELTPIPTVHVVQRNLELGFAKALRRLAGPCVLKPNTLGGSF---LTEYTDELSEDRL 194

Query: 156 QSSSWN---HGDQLLIEQYVDGIELTCGVMGD----ASLDVTEIAVPKSDFYSYELKYSS 208
           +S S     H    L+++ + G E TCGV+ D     +L V  I+ P S F  Y+ K   
Sbjct: 195 RSYSERVALHDPSFLVQERIAGTEYTCGVLVDRHEVTALPVARISNP-SGFLGYDQKTQK 253

Query: 209 LNSTHVLPAKIPLDIYKEVQ-RLAFLAHQ---AIGCRGISRSDFLFDPLSRKVFWLEINV 264
             S   L      D+   +Q RL+ ++ Q           R DF+ D   R +++LE+N+
Sbjct: 254 GYSVDFL------DVEDTIQSRLSSISKQIAREFRVHTFGRLDFIVDEQQR-IYFLELNL 306

Query: 265 QPGMTPVSIFPEMAAYAGYSFRELL 289
            PG+T  +IFP+M   AG+    L+
Sbjct: 307 IPGLTAEAIFPKMLTKAGFDLCHLI 331


>gi|126178605|ref|YP_001046570.1| D-alanine--D-alanine ligase [Methanoculleus marisnigri JR1]
 gi|125861399|gb|ABN56588.1| D-alanine--D-alanine ligase [Methanoculleus marisnigri JR1]
          Length = 663

 Score = 76.3 bits (186), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 68/261 (26%), Positives = 110/261 (42%), Gaps = 22/261 (8%)

Query: 50  KPDLAFNVLHGNFGEDGL----VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV 105
           K D  FN+    F  D      V A+ E+  IPYT +G  A A   DK   + +    G+
Sbjct: 368 KVDYVFNLCDEGFNNDPRKELHVPALFEIYSIPYTGAGPQALAFCYDKSLVRGIAKEMGI 427

Query: 106 PVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL--DLLQS--SSWN 161
           PV  +  +          +  P ++KP  G SS GI       SI    D++ S  ++  
Sbjct: 428 PVPDACFITPGDRTYDVGMKFPAIVKPNAGDSSYGITQESIAHSIEELSDIITSLRTTLG 487

Query: 162 HGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYS----------YELKY---SS 208
           +   LL+E+++ G +++ G++G+ S     + V + D+ +          YE K+   S 
Sbjct: 488 YDRSLLVEEFLTGKDISVGIIGNPSGYSMVLPVIEEDYSALPPGLPRICGYEAKWLPDSP 547

Query: 209 LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268
                  PA +P +  K + R      + + CR   R D+  D        LE+N  PG 
Sbjct: 548 YWKITSKPADLPEETEKAIVRCCLALFERLECRDYCRFDWRLDEHGNPKL-LEVNPNPGW 606

Query: 269 TPVSIFPEMAAYAGYSFRELL 289
                   MA YAG ++ E+L
Sbjct: 607 CWDGHLARMAKYAGLTYPEML 627


>gi|65319914|ref|ZP_00392873.1| COG1181: D-alanine-D-alanine ligase and related ATP-grasp enzymes
           [Bacillus anthracis str. A2012]
          Length = 110

 Score = 76.3 bits (186), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 38/100 (38%), Positives = 62/100 (62%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGG+SSE++VS+ +G    + L+   +++  I ++  + L+      D A   LHG
Sbjct: 10  IGVIMGGVSSEKQVSIMTGNEMIANLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 69

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
            +GEDG VQ  LE L IPY+ S +L+S + MDK  SK+++
Sbjct: 70  KYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNISKKIL 109


>gi|255586280|ref|XP_002533792.1| D-alanine-D-alanine ligase, putative [Ricinus communis]
 gi|223526281|gb|EEF28594.1| D-alanine-D-alanine ligase, putative [Ricinus communis]
          Length = 1000

 Score = 76.3 bits (186), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 79/302 (26%), Positives = 130/302 (43%), Gaps = 61/302 (20%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+ F V+HG FGEDG +Q +LE   IP+  +G      + DK  +   +S  G    P+ 
Sbjct: 171 DIVFPVIHGRFGEDGGIQELLENYNIPFVGTGSSECRQAFDKYYASIELSKRGFITVPNF 230

Query: 112 LVNRFTMDSQHLI-----------SPPYVIKPLKGGSSLGIIV-------IKKDQSIPLD 153
           LV     D   L            S   V+KP   GSS+G+ V       +KK + + L+
Sbjct: 231 LVQGKEADESELFKWFASNRLDPTSGTVVVKPAVAGSSIGVTVAYGVADSLKKAKDLILE 290

Query: 154 LLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDAS--------LDVTEIA--------VPK 196
            +        D++L+E ++D G E T  V+   S        L  TE+         + +
Sbjct: 291 GID-------DKVLVELFLDGGSEFTAIVVDVGSGFECHPVVLLPTEVELQFHGSADIRE 343

Query: 197 SD-FYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
           +D  ++Y  KY  +    +  P + P+DI K++++ A L  Q +  R  +R D  + P S
Sbjct: 344 NDAIFNYRRKYLPTQQVAYHTPPRFPVDIIKKIRQGASLLFQRLRLRDFARIDGWYLPSS 403

Query: 255 R----------------KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
                             + + +IN+  GM   S   + A+  G+S   +L  ++  A C
Sbjct: 404 NSAFSSSEGKFGRTDLGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRSIIHRA-C 462

Query: 299 LR 300
           LR
Sbjct: 463 LR 464



 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 67/312 (21%), Positives = 116/312 (37%), Gaps = 82/312 (26%)

Query: 55  FNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS---SCGVPVCPSI 111
           F  +HG  GEDG +Q++LE   +PYT  G++AS   MDK+ +   +S     GV     +
Sbjct: 636 FIAVHGGIGEDGTLQSMLEAQGVPYTGPGVVASKTCMDKVATSLALSHLADLGV-----L 690

Query: 112 LVNRFTMDSQHLISPPYV----------------IKPLKGGSSLGIIVIKKDQSI----- 150
            + +     Q L + P +                +KP + G S G+  ++  + +     
Sbjct: 691 TIKKEVYKKQDLQNMPALEVWHNLTSALQCETLCVKPARDGCSTGVARLRCTEDLAVYVK 750

Query: 151 --------------------------PLDLL--------------QSSSWNHGDQLLIEQ 170
                                     P +LL                S+  + ++L+ + 
Sbjct: 751 ALEDCLLRIPPNSLSKAHGVIEMPHPPPELLIFEPFIETDEIVVSSKSTCENANRLMWKG 810

Query: 171 YVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL---DI 223
           +   +E+T GV+G      SL  +       D  S E K+      ++ P    +   ++
Sbjct: 811 HSRWLEITVGVIGTRGSMHSLSPSVTVKETGDILSLEEKFQGGTGINLTPPPTSIVSNEV 870

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA----- 278
               ++   L    +   G SR D   +  S +V  +E+N  PGMTP ++    A     
Sbjct: 871 LDRCKQHIELIANTLQLEGFSRIDAFLNVDSGEVLIIEVNTVPGMTPSTVLIHQALAEQP 930

Query: 279 -AYAGYSFRELL 289
             Y    FR LL
Sbjct: 931 PVYPHRFFRTLL 942


>gi|302803947|ref|XP_002983726.1| hypothetical protein SELMODRAFT_180525 [Selaginella moellendorffii]
 gi|300148563|gb|EFJ15222.1| hypothetical protein SELMODRAFT_180525 [Selaginella moellendorffii]
          Length = 857

 Score = 75.9 bits (185), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 70/281 (24%), Positives = 120/281 (42%), Gaps = 36/281 (12%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+ F V+HG FGEDG +Q +LE   IP+  +G  A+  + DK  + + +S  G    PS 
Sbjct: 109 DIVFPVIHGKFGEDGGLQELLESAGIPFVGTGSSAARCAFDKYEAAKELSRHGFVTIPSF 168

Query: 112 LVNRFTMDSQHLI-----------SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160
           L++   +D   L+           S   V+KP K GSS+G+ V      +  D       
Sbjct: 169 LIDSPEIDKAALVEWFKANDLNPSSDRVVVKPAKSGSSIGVTVAHGLDEVIRDAETLLKE 228

Query: 161 NHGDQLLIEQYVDG-IELTCGVMGDAS--------LDVTEIAVPKSD-------FYSYEL 204
              D++++E ++ G  E T  ++   S        L  TE+ +   D        ++Y  
Sbjct: 229 GIDDRIVVEVFLQGCTEFTVIILDTGSGEQVQPVALLPTEVELLHGDGQSIGEKIFNYRR 288

Query: 205 KY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK------- 256
           KY  +   ++  P + P+   + ++  A      +  R  +R D    P S         
Sbjct: 289 KYLPTRQVSYHTPPRFPVQTIQSIRSGASKLFTLLNLRDFARVDGWLLPPSSSFNKSNDF 348

Query: 257 -VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            V + ++N+  GM   S   + AA  G S R++L  ++  A
Sbjct: 349 LVVFSDVNLVSGMEQTSFLFQQAAQVGLSHRDVLRLVLNRA 389



 Score = 57.0 bits (136), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 77/322 (23%), Positives = 130/322 (40%), Gaps = 73/322 (22%)

Query: 24  SALEDAGFKV-----SQIDVDRSVGLVLAHLKPD--LAFNVLHGNFGEDGLVQAILELLE 76
           S L  +G KV     S +    S+   + H K D  + F  +HG+ GE+G++Q +LE   
Sbjct: 511 SELSSSGSKVDYNVGSGVPTKLSMSEWIQHAKDDDAIVFIAVHGDIGENGILQEMLEAKR 570

Query: 77  IPYTHSGILASALSMDKMRSKQVV---SSCGVPVCPSILVNRFTM------DSQHLIS-- 125
           IP+T SG+ AS + MDK  +   +   SS GV     ++     +      +SQ  +S  
Sbjct: 571 IPFTGSGVKASRICMDKAVTGHTISPLSSNGVYSAKRVVYKTAELLHDCGDNSQLWLSLQ 630

Query: 126 -----PPYVIKPLKGGSSLGI--IVIKKDQSIPLDLLQ---------SSSWNHG------ 163
                    +KP   G S G+  +   +D ++ L  L+         S    HG      
Sbjct: 631 DKLEDSSICVKPAADGCSTGVARLCCARDLTVYLTALKEKLPRLLPGSLGKPHGIIELPA 690

Query: 164 ---DQLLIEQYVDG-------------------IELTCGVMGDA----SLDVTEIAVPKS 197
              D L+ E ++                     +E+T GV+G      +L  +       
Sbjct: 691 TIPDSLIFEPFIQTDDILVCEESQIAWEGKHRWVEITAGVIGKKGAMHALHPSITLKESG 750

Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEV-----QRLAFLAHQAIGCRGISRSDFLFDP 252
           D  S E K+      ++ P   PL   +E      +R+  +A+  +   G +R D   + 
Sbjct: 751 DILSLEEKFQGGTGVNLTPPP-PLICSEEAVRSCRERIELVAN-TLQLEGFARIDAFMNV 808

Query: 253 LSRKVFWLEINVQPGMTPVSIF 274
            + +V  +E+N  PGMTP ++ 
Sbjct: 809 DTGEVIVIEVNTVPGMTPSTVL 830


>gi|291276693|ref|YP_003516465.1| putative D-alanine--D-alanine ligase [Helicobacter mustelae 12198]
 gi|290963887|emb|CBG39723.1| putative D-alanine--D-alanine ligase [Helicobacter mustelae 12198]
          Length = 344

 Score = 75.9 bits (185), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 61/234 (26%), Positives = 109/234 (46%), Gaps = 11/234 (4%)

Query: 49  LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
           L+ D+  N++HG  GEDG +  +L+   IPY    + AS LS +K+ +K      G+P  
Sbjct: 86  LEFDILLNLVHGADGEDGTLAGLLDFYHIPYIGPRVEASVLSFNKLYTKIFAKERGIPTL 145

Query: 109 PSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168
           P + + +   + +  +  P +IKP + GSS+GI + K  QS+   L Q+  ++    +L+
Sbjct: 146 PFVHLTQ-HQEQKIPLDFPLIIKPARLGSSIGISIAKDPQSLNFALDQAFEYD--SSVLV 202

Query: 169 EQYVDGIE----LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLN-STHVLPAKIPLDI 223
           E +  GI+      C + GD    + E    K +F  +E KY   +  + +  A +    
Sbjct: 203 EPFFSGIKEYNLAGCKIQGDFVFSLIE-EPGKKEFLDFEDKYLDFSRDSKIENANLSAQN 261

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
             ++Q+     ++      + R DF       K++  EIN  PG     +F + 
Sbjct: 262 VTKMQKHFEALYENCFEGALIRCDFFIH--EDKIYINEINPIPGSMANYLFEDF 313


>gi|1814254|gb|AAB41857.1| D-Alanine:D-Alanine ligase [Streptococcus sanguinis SK1]
          Length = 197

 Score = 75.9 bits (185), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 60/190 (31%), Positives = 102/190 (53%), Gaps = 16/190 (8%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-LVNRFTMDS-----QHLIS 125
           LE+L++PY    IL+S+L+MDK+ +K+V+ S G+   P + LV+   ++      +  ++
Sbjct: 2   LEVLKMPYVGCNILSSSLAMDKITTKRVLESAGIAQVPYVALVDGEDLEQKIQEIEEKLT 61

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW-NHGDQLLIEQ-YVDGIELTCGVMG 183
            P   KP   GSS+GI   +  Q+  L      +W +   ++L+EQ      E+  G++G
Sbjct: 62  YPVFTKPSNMGSSVGISKSETKQNCVL----LWTWLSIRRRVLVEQGDRTAREIEVGLLG 117

Query: 184 DASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           +  +  T   E+ V    FY YE KY     T  +PAKIP ++   +++ A  A +A+G 
Sbjct: 118 NVDVKSTLPGEV-VKDVAFYDYEAKYIDNKITMDIPAKIPEEVVSLMRQNAEAAFRALGG 176

Query: 241 RGISRSDFLF 250
            G+SR DF +
Sbjct: 177 LGLSRCDFFY 186


>gi|319957669|ref|YP_004168932.1| D-alanine/D-alanine ligase [Nitratifractor salsuginis DSM 16511]
 gi|319420073|gb|ADV47183.1| D-alanine/D-alanine ligase [Nitratifractor salsuginis DSM 16511]
          Length = 349

 Score = 75.9 bits (185), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 67/262 (25%), Positives = 123/262 (46%), Gaps = 21/262 (8%)

Query: 15  SLSSG---KACASALEDAGFKVSQIDVDRSVGLVLAHLKP---DLAFNVLHGNFGEDGLV 68
           + SSG   KA   +LE  GF ++        G +L   KP   D   N++HG  GEDG +
Sbjct: 56  TFSSGEYKKAKKLSLERGGFSMA--------GGLLGGRKPLEFDCLLNLIHGRDGEDGKI 107

Query: 69  QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPY 128
             ++E   IP+    + AS +S  K+ +K +  + G+ V    L+ +        +  P 
Sbjct: 108 AGMMEFFRIPFIGPRLEASVMSYSKLNTKLLAQALGISVLEYELLRKEGPRKLSRLEYPV 167

Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI-ELTCGVMGDASL 187
           ++KP+  GSS+G+ +++  ++  LD     ++   D +++E +V+GI E        ++ 
Sbjct: 168 IVKPVHLGSSIGVSIVR--EASQLDYALDVAFEFDDLVIVEPFVEGIREYNLAGCKTSAW 225

Query: 188 DVTEIAVP-KSDFYSYELKYSSLN-STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
           +++ I  P K +F  ++ KY   +  T V  A I   + + ++      +  +    + R
Sbjct: 226 ELSLIEEPQKEEFLDFDKKYMDFSRDTRVQEAVIDAPLRERLETAFKNIYDPLFLGSLIR 285

Query: 246 SDFLFDPLSRKVFWLEINVQPG 267
            DF    +  KV+  EIN  PG
Sbjct: 286 CDFFV--VEEKVYLNEINPIPG 305


>gi|118474718|ref|YP_891983.1| D-alanyl-alanine synthetase A [Campylobacter fetus subsp. fetus
           82-40]
 gi|118413944|gb|ABK82364.1| D-alanine--D-alanine ligase [Campylobacter fetus subsp. fetus
           82-40]
          Length = 345

 Score = 75.9 bits (185), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 78/320 (24%), Positives = 132/320 (41%), Gaps = 51/320 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------------------- 40
             ++ GG+S E E+S+ S  A   AL+    ++S I VD+                    
Sbjct: 3   FGIVFGGVSFEHEISIVSAIAVKKALK---CELSFIFVDKFGDFYLINSDDMRANFFSSH 59

Query: 41  ----------SVGLVLAH-------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                       G   AH       L  D   N++HG  GEDG +  + E   + +    
Sbjct: 60  KYKNSKKLHLKKGGFAAHGIFGMNDLNVDCYINLIHGRDGEDGKIAGMFEFYNVTFIGPR 119

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIV 143
           + AS +S +K  +K +   C V   P  ++ R  +    L   P+++KP + GSS+G+ V
Sbjct: 120 LEASVMSFNKELTKLLAHKCAVKSLPYEMIKRGDIVKTEL---PFILKPARLGSSIGVSV 176

Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI-ELT-CGVMGDASLDVTEIAVP-KSDFY 200
           ++   +  LD     ++     +L+E + +GI E    G   +     + I  P K+DF 
Sbjct: 177 VRDISN--LDYALDVAFEFDKDILVEPFKEGIREFNLAGFKAENDFIYSFIEEPKKNDFL 234

Query: 201 SYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG-ISRSDFLFDPLSRKVFW 259
            +E KY S +S+    A I   +  E++      +      G + R DF    L  +V+ 
Sbjct: 235 DFEQKYMSFSSSCAKEADIDDSLKIEIKDAFAKIYNGGNFDGALIRCDFF--VLDNEVYL 292

Query: 260 LEINVQPGMTPVSIFPEMAA 279
            EIN  PG     +F +  +
Sbjct: 293 NEINPNPGSMANYLFTDFTS 312


>gi|46446032|ref|YP_007397.1| putative D-alanine--D-alanine ligase [Candidatus Protochlamydia
           amoebophila UWE25]
 gi|46399673|emb|CAF23122.1| putative D-alanine--D-alanine ligase [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 798

 Score = 75.9 bits (185), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 70/266 (26%), Positives = 120/266 (45%), Gaps = 21/266 (7%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP----- 106
           DL F V+HG FGEDG +Q ILE +++P+  +G  A A    K  + Q++     P     
Sbjct: 87  DLVFPVIHGIFGEDGELQKILEEIDVPFVGTGSQACAEMFCKYHASQILHQNRFPAFMKL 146

Query: 107 -VCPSI--LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
            VCP    L    +   QH +    ++KP  GGSS+G+  ++  +     +         
Sbjct: 147 EVCPETNDLAPIKSFFEQHQLKRA-IVKPTMGGSSIGVTSVQTPEDAFEKIKMLCQQGIA 205

Query: 164 DQLLIEQYVDGIELTCGVMGD-----ASLDVTEIAVPKSD--FYSYELKYSSLN-STHVL 215
            + LIE + +G E T  V+ +      +L  TEI +   +   + Y  KY   N +T+  
Sbjct: 206 KRALIEPFCEGTEFTVVVLQNQQSKPVALIPTEIEMSYQNHQIFDYRKKYLPTNQTTYHT 265

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD-FLFDPLSRKVFWLEINVQPGMTPVSIF 274
           PA+    I + +++ A         R  +R D +L +     +++ ++N   GM   S  
Sbjct: 266 PARFDETIIQGIRQKAEAIFTLFHMRDFARLDGWLLN--DGTIYFTDLNPISGMEQNSFL 323

Query: 275 PEMAAYAGYSFRELLLWMVEDASCLR 300
              A+  G + R++   ++  A CLR
Sbjct: 324 FRQASLLGLTHRDVFRLIITSA-CLR 348



 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 58/283 (20%), Positives = 114/283 (40%), Gaps = 61/283 (21%)

Query: 53  LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111
             F  +HG  GE+G++Q  LE  ++ Y  S    S++ MDK  + QV+     P   S+ 
Sbjct: 480 FVFIAMHGGEGENGILQKELEKNQLYYNGSCAKTSSICMDKFLTGQVIEQLKHPNIFSLP 539

Query: 112 -----LVNRFTMDSQHLI-----------SPPYVIKPLKGGSSLGIIVIKKDQSIP---- 151
                  N F   +++ +           S   +IKP + G S GI++++    +     
Sbjct: 540 KECVEAANLFGQSTKYFLEKWNKICISLRSNRLIIKPRQDGCSAGIVLLESGADLEKYFA 599

Query: 152 -----LDLLQSSSWNHGD-----------QLLIEQYVDG------------------IEL 177
                + L+   S++              + L+E Y++                   +EL
Sbjct: 600 FIQNNVSLIPKGSFSQQKDVIEMPSSTCVEYLLEPYIETDRIILDQGELIHEIKEGWVEL 659

Query: 178 TCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
           T GV+    +  +    I + +    S E K+      ++ P    +   ++V ++ FL 
Sbjct: 660 TVGVLEHNQIYRSLNPSITLAEGAVLSLEEKFQGGTGVNLTPPPEKILASEDVSQIKFLI 719

Query: 235 HQ---AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274
            +   A+  +  +R D  +   ++K+  +E N  PG+TP ++F
Sbjct: 720 EKTADALQIQNYARLDIFYHRETKKMVVIEANTLPGLTPSTVF 762


>gi|154173627|ref|YP_001408215.1| D-alanyl-alanine synthetase A [Campylobacter curvus 525.92]
 gi|112802460|gb|EAT99804.1| D-alanine--D-alanine ligase (D-alanylalanine
           synthetase)(D-Ala-D-Ala ligase) [Campylobacter curvus
           525.92]
          Length = 347

 Score = 75.5 bits (184), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 62/239 (25%), Positives = 114/239 (47%), Gaps = 13/239 (5%)

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV 105
           +  L+ D+  N++HG  GEDG   ++ +   I Y    + AS +S +K  +K +    GV
Sbjct: 82  VKRLEVDVYINLIHGMDGEDGKFASLFDFYGISYIGPRLEASVMSYNKELTKFLAQKVGV 141

Query: 106 PVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
                 ++   T +     + P ++KP + GSS+G+ V+ KD+S   +  +  ++    +
Sbjct: 142 KTLDYEMI---TYEELPKFALPIILKPARLGSSIGVSVV-KDES-EFEYARDVAFEFDKE 196

Query: 166 LLIEQYVDGIELT--CGVMGDASLDVTEIAVP-KSDFYSYELKYSSL-NSTHVLPAKIPL 221
           +L+E +++G++     G M D  +  + +  P K +F  YE KY S  N +    A+I  
Sbjct: 197 VLVEPFIEGVKEYNLAGCMIDGKMRFSIVEEPKKKEFLDYEQKYMSFSNESKAQEARIDE 256

Query: 222 DIYKEVQRLAFLAHQAIGCRG-ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279
           ++   ++   F+     G  G I R DF    +  +V+  EIN  PG     +F +  A
Sbjct: 257 ELRDRLKE-NFVKIYGFGFEGAIIRCDFF--VIEGEVYLNEINPNPGSLANYLFEDFEA 312


>gi|163783735|ref|ZP_02178721.1| hypothetical protein HG1285_01523 [Hydrogenivirga sp. 128-5-R1-1]
 gi|159880981|gb|EDP74499.1| hypothetical protein HG1285_01523 [Hydrogenivirga sp. 128-5-R1-1]
          Length = 328

 Score = 75.5 bits (184), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 66/253 (26%), Positives = 121/253 (47%), Gaps = 14/253 (5%)

Query: 53  LAFNVLHGNFGEDGL--VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
           + FN+ +G  GE     V A+LE+L I YT SG    A+++DK+ +K V    G+P    
Sbjct: 71  IVFNLSYGTQGESRYSHVPAMLEMLGIMYTGSGPFGHAIALDKVSTKLVFKEYGIPTPEF 130

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           ++++ +    + L S P V+KP     SLG+ +++  + +  D L       G + L+E+
Sbjct: 131 VVISPYQKIPEGL-SFPLVVKPRMEAQSLGVNLVRNYRELE-DTLTHVWEEFGQEALVEE 188

Query: 171 YVDGIELTCGVMGDA----SLDVTEIAV---PKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           ++ G E    ++G+     +L +T I +   P++  YS E K    +     PA I  ++
Sbjct: 189 FIRGPEYEVSLIGNGKYIKALPITGIYLGDDPEA-IYSREAKL-KYHPEQFCPAAIKGEL 246

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283
            + +  L+  A  A+  R  +R D        K ++ E+N    + P   F   A  AG 
Sbjct: 247 ARRLVELSIKAFNALHLRDYARFDLRLGE-DGKPYFFEVNSMASLNPSGSFFCAAKAAGL 305

Query: 284 SFRELLLWMVEDA 296
           S+ +L+  ++  +
Sbjct: 306 SYDQLIFKILHSS 318


>gi|168012025|ref|XP_001758703.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|76880176|dbj|BAE45860.1| D-alanine-D-alanine ligase [Physcomitrella patens subsp. patens]
 gi|162690313|gb|EDQ76681.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 966

 Score = 75.5 bits (184), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 93/372 (25%), Positives = 160/372 (43%), Gaps = 76/372 (20%)

Query: 1   MAVLMGGISSEREVSLSSGKAC-------------------------ASAL------EDA 29
           +A++ GG S ER +SL+S ++                           SAL      ED 
Sbjct: 113 VALVCGGPSEERGISLNSARSVLDHLEGGDVSVSCYYMNQKLEPFGIPSALMYSNTPEDF 172

Query: 30  GFKVSQIDVD-RSVGLVLAHLKP--DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
            FK++      +S    L HL+   D+ F  LHG FGEDG +QA+LE   +PY  +G  A
Sbjct: 173 DFKIASTARSFKSQAEFLEHLQATSDIVFPALHGRFGEDGGIQALLESAGLPYIGTGAAA 232

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI-----------SPPYVIKPLKG 135
           + ++ DK  +   ++  G    P  LV    +D   L            S   V+KP + 
Sbjct: 233 AQVAFDKYDAAAEMAWHGFATLPIFLVENGKVDINRLRGWFEDNNINANSGRVVVKPARS 292

Query: 136 GSSLGIIVIKK-DQSIPLDLLQSSSWNHG--DQLLIEQYVDG-IELTCGVM----GDASL 187
           GSS+G+ V +  D ++       + +N G  D+++IE + +G +E T  V+    G+ + 
Sbjct: 293 GSSVGVSVAEGLDTAVQ---HAEALFNKGGNDRVVIEMFAEGALEFTALVLDVGFGNETR 349

Query: 188 DV----TEIAVPKSDF----------YSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAF 232
            V    TE+ +   D+          ++Y  KY  +   ++  P +   +   +++  A 
Sbjct: 350 PVALFPTEVELSGLDYESDGENETAIFNYRRKYLPTRQVSYHTPPRFSEETINKIRNRAA 409

Query: 233 LAHQAIGCRGISRSDFLFDP----LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
              + +  R I+R D    P     S  + + +IN+  GM   SI    A+  G +  ++
Sbjct: 410 DLFRILNLRDIARVDGWLLPQVGGQSETIIFSDINLMSGMEQTSILFMQASLVGLAHVDI 469

Query: 289 LLWMVEDASCLR 300
           L  ++  A C R
Sbjct: 470 LRTLLRRA-CTR 480



 Score = 38.5 bits (88), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 65/302 (21%), Positives = 113/302 (37%), Gaps = 85/302 (28%)

Query: 53  LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV---SSCGVPVCP 109
           + F  +HG+ GE+G +Q +L    + +T S   AS L MDK  +   +   SS G+    
Sbjct: 651 VVFIAVHGSIGENGTLQELLAASGVRHTGSAAEASRLCMDKAATGAAISHLSSQGIYTAA 710

Query: 110 SILV---------NRFTMD-SQHLISPPYVIKPLKGGSSLGI---------------IVI 144
             L          ++  M+  + L +    +KP+  G S G+               +  
Sbjct: 711 KALRKVHEILQKEDQVWMELKEELKANDLCVKPVGDGCSTGVAKLSCAEDLAAYAKAVQT 770

Query: 145 KKDQSIPLDLLQSSSWNHG---------DQLLIEQYV-----------------DG---- 174
            + Q  P   L++    HG         ++LL E ++                 DG    
Sbjct: 771 GQSQIPPGTFLKA----HGIIEMPGVPPERLLFEPFIETDHIAVLSSTTGEDSKDGELIW 826

Query: 175 ------IELTCGVMG--------DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
                 IE+T GV+G        + S+ V E         + E K+      ++ P    
Sbjct: 827 EGKSRWIEVTVGVLGVQGVMHALNPSITVKETG----SILTLEEKFQGGTGINLTPPPPS 882

Query: 221 LDIYKEV----QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPE 276
           L   + +    +R+  +A + +G  G +R D      + +V  +E N  PGMTP ++   
Sbjct: 883 LATEEAIAGCKKRIEIVA-RTLGLDGFARIDAFMHADTGEVIIIEANTVPGMTPSTVLIH 941

Query: 277 MA 278
            A
Sbjct: 942 QA 943


>gi|254464679|ref|ZP_05078090.1| D-alanine--D-alanine ligase domain protein [Rhodobacterales
           bacterium Y4I]
 gi|206685587|gb|EDZ46069.1| D-alanine--D-alanine ligase domain protein [Rhodobacterales
           bacterium Y4I]
          Length = 336

 Score = 75.5 bits (184), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 86/307 (28%), Positives = 134/307 (43%), Gaps = 21/307 (6%)

Query: 7   GISSEREVSLSSGKACAS---ALEDAGFKVSQIDVDRSVGLVLAHL-KPDLAFNVLHGNF 62
           G+S E      S +  A+   AL   G +  +I   R +   LA   + DL FN+  G  
Sbjct: 17  GLSDEAMAEFDSPETIAAIENALHARGHQTQRIGHVRILAQRLAAGDRWDLVFNIAEGLQ 76

Query: 63  GE--DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
           G   +  V A+LE   IPY+ S  L  AL +DK  +K+VV   G+P  P  ++     DS
Sbjct: 77  GRAREAQVPALLEAFGIPYSFSDPLTQALGLDKAMAKRVVRDAGIPTAPFAVLETPADDS 136

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH--GDQLLIEQYVDGIELT 178
              +  P  +KPL  G+  G     K          + S        +L E ++ G E T
Sbjct: 137 GLDLPFPIFLKPLAEGTGKGCEHASKANGADQAAAAARSLRQRFRQPVLAESFLPGREFT 196

Query: 179 CGVMGDASLDVTEIAV--------PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            G++G+ + D   IAV         +++ YS++ K      T V+         +     
Sbjct: 197 VGILGNGA-DARVIAVMEILLLDTAEAEIYSFQNKQQW--ETRVIYRLADDAEARAAGAA 253

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV-SIFPEMAAYAGYSFRELL 289
           A  A+ A+GCR  +R D   D      F LE+N  PG+ P  S  P ++A AG  ++ L+
Sbjct: 254 ALAAYHALGCRDAARIDLRSDAAGIPNF-LEVNTLPGLHPSHSDLPILSAKAGLDYQGLI 312

Query: 290 LWMVEDA 296
             +++ A
Sbjct: 313 GGILDAA 319


>gi|51945071|gb|AAU14218.1| VanB [Enterococcus faecium]
          Length = 223

 Score = 75.5 bits (184), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 42/133 (31%), Positives = 70/133 (52%), Gaps = 2/133 (1%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+AF VLHG  GEDG +Q +  L  IPY    I +SA  MDK  +  +  + G+ V    
Sbjct: 57  DVAFPVLHGKCGEDGAIQGLFVLSGIPYVGCDIQSSAACMDKSLAYILTKNAGIAVPEFQ 116

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
           ++++        ++ P  +KP + GSS G+  +   +   L+    ++  +  ++LIEQ 
Sbjct: 117 MIDKGDKPEAGALTYPVFVKPARSGSSFGLTKVNGTEE--LNAAIEAAGQYDGKILIEQA 174

Query: 172 VDGIELTCGVMGD 184
           + G E+ C VMG+
Sbjct: 175 ISGCEVGCAVMGN 187


>gi|317177433|dbj|BAJ55222.1| D-alanyl-alanine synthetase A [Helicobacter pylori F16]
          Length = 347

 Score = 75.5 bits (184), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 76/319 (23%), Positives = 135/319 (42%), Gaps = 47/319 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDA----------------------GFKVSQIDV 38
             VL GG S E E+S+ S  A   AL+D                           +QI  
Sbjct: 3   FCVLFGGASFEYEISIVSAIALKEALKDRIKYFIFLDENHHFYLIEESNMHSKYFAQIKE 62

Query: 39  DRSVGLVLAH-------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
            +   L+L H             ++  L  N++HG  GEDG + ++LE   I +    I 
Sbjct: 63  KKLPPLILTHNGLLKSSFLGAKTIELPLVINLVHGGDGEDGKLASLLEFYRIAFIGPRIE 122

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVN-RFTMDSQHLI--SPPYVIKPLKGGSSLGII 142
           AS LS +K  +K      GV     +L+N +   ++ +LI  + P++IKP   GSSLG+ 
Sbjct: 123 ASVLSYNKYLTKLYAKDLGVKALDYVLLNEKNCANALNLIGFNFPFIIKPSNAGSSLGVS 182

Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE----LTCGVMGDASLDVTEIAVPKSD 198
           V+K+++ +   L    ++ +  ++LIE ++ G++      C +  D      E    K +
Sbjct: 183 VVKEEKELIYAL--DGAFEYSKEVLIEPFIQGVKEYNLAGCKIKKDFCFSYVE-EPNKQE 239

Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
           F  ++ KY   +      A +   + ++++      +  +    + R DF    +  +V+
Sbjct: 240 FLDFKQKYLDFSRNKAPKANLSSALEEQLKENFKKLYNDLFDGALIRCDFFV--IENEVY 297

Query: 259 WLEINVQPGMTPVSIFPEM 277
             EIN  PG     +F + 
Sbjct: 298 LNEINPIPGSLANYLFDDF 316


>gi|268323675|emb|CBH37263.1| conserved hypothetical protein, containing D-alanine--D-alanine
           ligase C-terminus domain [uncultured archaeon]
          Length = 720

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 75/310 (24%), Positives = 137/310 (44%), Gaps = 25/310 (8%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD--------LAFNVL 58
           G+ ++   + ++ K  A +LE  G  V   + +  +   L    P         +AFN+ 
Sbjct: 19  GMQNKEMYNPNTVKLVAESLEKEGHNVRIAEGNMYIIEKLQEFMPRVIEGERLGMAFNMA 78

Query: 59  HGNFGEDGLVQ--AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116
           +G  GE       A+LE+L IPY  SG    +L++DK+ +K ++   G+P  P+  V   
Sbjct: 79  YGIQGESRYTHLPAMLEMLGIPYVGSGPEGHSLALDKVITKILMQKQGIP-TPNFWVYST 137

Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQ----SIPLDLLQSSSWNHGDQLLIEQYV 172
             +    +  P ++KP     S GI ++  ++    ++ L +++        Q L+EQ++
Sbjct: 138 GDEDMSDVQYPVIVKPKMEAVSYGIKIVDNEEDLRAAVKLVVIEFKQ-----QALVEQFI 192

Query: 173 DGIELTCGVMGDA---SLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
            G E   G++G+    +  V EI +    D               + PAKI   +   + 
Sbjct: 193 RGREFCVGLLGNGDPEAFPVLEIDLENDPDAIQTVDDKKQKPRGKICPAKISQKLADVMV 252

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           RL+  A  A+G R  +R D   D  ++ ++ LEIN    +     +   A  AGY +  L
Sbjct: 253 RLSKDAFHALGLRDFARVDIRMDE-AKNIYLLEINSMASLGLTGSYVHAANVAGYDYARL 311

Query: 289 LLWMVEDASC 298
           +  ++E A+ 
Sbjct: 312 VNKILEVAAV 321


>gi|188527419|ref|YP_001910106.1| D-alanyl-alanine synthetase A [Helicobacter pylori Shi470]
 gi|229485957|sp|B2UT94|DDL_HELPS RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|188143659|gb|ACD48076.1| D-alanyl-alanine synthetase A [Helicobacter pylori Shi470]
          Length = 347

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 59/234 (25%), Positives = 110/234 (47%), Gaps = 12/234 (5%)

Query: 53  LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
           L  N++HG  GEDG + ++LE   I +   GI AS LS +K  +K      GV     +L
Sbjct: 90  LVINLVHGGDGEDGKLASLLEFYRIAFIGPGIEASVLSYNKYLTKLYAKDLGVKALDHVL 149

Query: 113 VN-RFTMDSQHLI--SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
           +N +   ++ +LI  + P++IKP   GSSLG+ V+K+++ +   L    ++ +  ++LIE
Sbjct: 150 LNEKNRANALNLIGFNFPFIIKPSNAGSSLGVSVVKEEKELIYAL--DGAFEYSKEILIE 207

Query: 170 QYVDGIE----LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
            ++ G++      C +  D      E    K +F  ++ KY   +      A +   + +
Sbjct: 208 PFIQGVKEYNLAGCKIKKDFCFSYVE-EPNKQEFLDFKQKYLDFSRNKAPKANLSNALEE 266

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279
           +++      +  +    + R DF    +  +V+  EIN  PG     +F +   
Sbjct: 267 QLKENFKKLYNDLFDGALIRCDFFV--IENEVYLNEINPIPGSLANYLFDDFKT 318


>gi|300113563|ref|YP_003760138.1| hypothetical protein Nwat_0871 [Nitrosococcus watsonii C-113]
 gi|299539500|gb|ADJ27817.1| conserved hypothetical protein [Nitrosococcus watsonii C-113]
          Length = 364

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 66/252 (26%), Positives = 115/252 (45%), Gaps = 27/252 (10%)

Query: 68  VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPP 127
           + A+LE+L IPY+ +G     L  DK   + V  + GVPV     V+   ++   L   P
Sbjct: 93  IPALLEMLGIPYSGAGPTCLGLCYDKSLVRSVAKTHGVPVPAETFVHGNDLNGAILKDFP 152

Query: 128 YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH-------GDQLLIEQYVDGIELTCG 180
            +IKP +G  S+GI     + S+  D  Q+ ++ +          LLI++++ G E + G
Sbjct: 153 ALIKPNRGDGSVGIT----ENSLVYDEPQAHAYINKLAMEFPSCDLLIQEFLPGDEYSVG 208

Query: 181 VMGDASLDVTEIAVPKSDF-------------YSYELKYSSLNSTHVLPAKIPLD--IYK 225
           ++G+ S     + + K D+             Y+ ++  +S   T +   K  +D  + +
Sbjct: 209 LLGNPSSGFKILPILKVDYSRLAAHRLPPILAYASKVDPASPYWTDIKYGKAAIDEGLRQ 268

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285
            +     L  + +GCR  +R DF  D    +V  LE+N  P          M  +AGY +
Sbjct: 269 RLVGYCRLLFERLGCRDYARFDFRAD-AQGEVKLLEVNPNPAWCWDGKLNLMVGFAGYRY 327

Query: 286 RELLLWMVEDAS 297
            ELL W+++ A 
Sbjct: 328 GELLEWILQAAQ 339


>gi|86153489|ref|ZP_01071693.1| D-alanine--D-alanine ligase [Campylobacter jejuni subsp. jejuni
           HB93-13]
 gi|85843215|gb|EAQ60426.1| D-alanine--D-alanine ligase [Campylobacter jejuni subsp. jejuni
           HB93-13]
          Length = 346

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 59/235 (25%), Positives = 113/235 (48%), Gaps = 9/235 (3%)

Query: 49  LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
           L+ +   N++HG  GEDG + A+ E   I +    + AS LS +K  +K    S GV   
Sbjct: 85  LECECVINLIHGRDGEDGKIAALFEFYSIKFIGPRLEASVLSFNKELTKLYAKSVGVKTL 144

Query: 109 PSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168
              ++ R   +S+  +S P +IKP + GSS+GI ++K ++   L+  +   +   + L++
Sbjct: 145 DYTML-RKNQNSKEKLSFPCIIKPARLGSSIGISIVKDEKD--LEYAKDVGFEFDNDLVV 201

Query: 169 EQYVDGIELT--CGVMGDASLDVTEIAVP-KSDFYSYELKYSSLNS-THVLPAKIPLDIY 224
           E++ + I+     G M +     + I  P K +F  +E KY S +    ++ A +  ++ 
Sbjct: 202 EEFKNNIKEYNLAGCMINDEFAFSIIEEPKKKEFLDFEQKYLSFSGHNELIEADLSEELK 261

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279
           ++++      +  +    + R DF    L  +V+  EIN  PG     +F + + 
Sbjct: 262 EKLKDSFKKIYNPLFKGALIRCDFFI--LDNEVYLNEINPNPGSLANYLFKDFST 314


>gi|116748158|ref|YP_844845.1| D-alanine--D-alanine ligase domain-containing protein
           [Syntrophobacter fumaroxidans MPOB]
 gi|116697222|gb|ABK16410.1| D-alanine--D-alanine ligase [Syntrophobacter fumaroxidans MPOB]
          Length = 326

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 78/282 (27%), Positives = 129/282 (45%), Gaps = 16/282 (5%)

Query: 21  ACASALEDAGFKVSQIDVDRSVGLVLA-HLKPDLAFNVLHG--NFGEDGLVQAILELLEI 77
           A  SAL D  F+  +I   R++   LA   + DL FN+  G   FG +  + A+L+   I
Sbjct: 34  AIESALRDLKFETDRIGHVRNLVRRLAVGERWDLVFNIAEGLAGFGREAAIPALLDAYGI 93

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGS 137
           PYT S  L  +LS+ K  +K V+ + G+P    +++   +      I  P   KP+  G+
Sbjct: 94  PYTFSDPLVLSLSLHKGMAKNVLRNMGIPTADFVVIQDVSETEAIGIPFPVFAKPVAEGT 153

Query: 138 SLGIIVIKK--DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS----LDVTE 191
             GI    +   Q   +   +     +   +LIE+++ G E T G++G  +    + V E
Sbjct: 154 GKGIDAASRIGTQEELVAKCRQLLEVYRQPVLIEKFLPGREFTVGLVGTGAKTEVVGVME 213

Query: 192 IAVP---KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           + +    + D YSY  K           A+    I +   R++  A + +GCR   R D 
Sbjct: 214 VILKDGAERDAYSYSNKEHYERRVEYRLAE--GSIARLAARISVEAWRKLGCRDGGRIDL 271

Query: 249 LFDPLSRKVFWLEINVQPGMTPV-SIFPEMAAYAGYSFRELL 289
             D  +   F +E+N   G+ PV S  P ++  AG S+ EL+
Sbjct: 272 RCDERNVPSF-VELNPLAGLHPVHSDLPILSRLAGMSYVELI 312


>gi|325111081|ref|YP_004272149.1| D-alanine--D-alanine ligase [Planctomyces brasiliensis DSM 5305]
 gi|324971349|gb|ADY62127.1| D-alanine--D-alanine ligase [Planctomyces brasiliensis DSM 5305]
          Length = 329

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 74/264 (28%), Positives = 122/264 (46%), Gaps = 24/264 (9%)

Query: 52  DLAFNVLHGNFG--EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109
           DL FN+  G  G   +  V +IL++ EIPYT S  L  ++ + K  +KQVV+  G+    
Sbjct: 66  DLVFNISEGLRGLSRESQVPSILDVYEIPYTFSDPLTLSVCLHKELTKQVVARAGILTPA 125

Query: 110 SILVNRFT-MDSQHLISPPYVIKPLKGGSSLGII------VIKKDQSIPLDLLQSSSWNH 162
           S+LV++ + +D  HL  P +  KP+  G+  G+          +  S+ L LL       
Sbjct: 126 SLLVSQLSDLDRLHLQFPLFA-KPVAEGTGKGVTPASCVNSFNELHSVCLQLLTEFE--- 181

Query: 163 GDQLLIEQYVDGIELTCGVMGD-------ASLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215
              +L+E ++ G E T G++G         +L++      +   YSY  K    +    +
Sbjct: 182 -QPVLVESFLPGREFTVGILGTGEAARVVGTLEIVLREAAEVGVYSYVNKERCEDLVDYV 240

Query: 216 PAKIPLDI-YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP-VSI 273
           P     D   ++ + LA  A +A+GCR   R D   D   R  F +E N   G+ P  S 
Sbjct: 241 PVNGHDDAEVRQAEELALTAWRALGCRDGGRIDVRSDSHGRPNF-IEANPLAGLHPHHSD 299

Query: 274 FPEMAAYAGYSFRELLLWMVEDAS 297
            P +A   G ++ +L+  +V  A+
Sbjct: 300 LPMIATAVGMTYVDLIDQIVTSAA 323


>gi|290473195|ref|YP_003466060.1| putative D-alanine--D-alanine ligase [Xenorhabdus bovienii SS-2004]
 gi|289172493|emb|CBJ79260.1| putative D-alanine--D-alanine ligase [Xenorhabdus bovienii SS-2004]
          Length = 365

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 80/326 (24%), Positives = 146/326 (44%), Gaps = 57/326 (17%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGF-----KVSQIDVDRSV--GLVLAHLKP-- 51
           ++++ GGIS E   S+SS      +  +  F      +   D D SV       ++ P  
Sbjct: 14  LSIIFGGISPEHPASVSSFDNLIKSFRELNFDRNLNSIYFFDKDGSVLYNAYTPYISPYD 73

Query: 52  ---------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
                                +   N+LHGN GEDG +Q + +  +I  T   +L S+LS
Sbjct: 74  FTHSGDKIDLYTAIKRMSKQSEFHINLLHGNLGEDGHIQGVAKYFKIKGTFGSVLPSSLS 133

Query: 91  MDKMRSKQVVSSCGVPVCPSI------------LVNRFTMDSQHLISPPYVIKPLKGGSS 138
           M K      ++S    + PS+            L   F++ S +      VIKP   G+S
Sbjct: 134 MSKYHMSHYINS----LLPSLRSPKTLLLTEGNLEKAFSLISDNFPEEKIVIKPNSLGAS 189

Query: 139 L---GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG---VMGDA-SLDVTE 191
           L     + ++ ++   LD L+ + + +    L++ ++ G E + G   + G A +L+V E
Sbjct: 190 LFTNKYVNLENEKKSILDNLK-NIFEYDRFALVQAFIKGKEYSVGCIRIEGKAIALNVVE 248

Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
           I + K+ F+ ++ K+    +  +L  +   +I + ++ L+    ++ G   + R DF+  
Sbjct: 249 I-ITKNGFFGHDEKHRINKAEEILLIQ-DSEITRTLKDLSIKIFESTGYEFMCRFDFIVT 306

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEM 277
             S ++++LE N  PGM   SIFP+M
Sbjct: 307 E-SEEIYFLESNPIPGMMKNSIFPKM 331


>gi|238925027|ref|YP_002938543.1| D-ala D-alanine ligase [Eubacterium rectale ATCC 33656]
 gi|238876702|gb|ACR76409.1| D-ala D-alanine ligase [Eubacterium rectale ATCC 33656]
          Length = 332

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 64/223 (28%), Positives = 110/223 (49%), Gaps = 29/223 (13%)

Query: 70  AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR-FTMDSQHLI--SP 126
           A+LE+L +PY+ SG+  SAL  +K   K+ + + G+ +  S +VN  F ++   L     
Sbjct: 90  ALLEILNVPYSGSGVFPSALMNNKHFCKKALLNLGIRMPKSCIVNHDFPLNCAQLRKWKY 149

Query: 127 PYVIKPLKGGSSLGII----------VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
           P  +KP   GSSLGI           VIKK   + +D           +++IE+YV+GI+
Sbjct: 150 PLFVKPNCEGSSLGISNDCVCHTIDEVIKKCNKLLMDF---------QEIIIEEYVEGID 200

Query: 177 LTCGVMG-DASLDVTEIAVPK-SDFYSYEL-----KYSSLNSTHVLPAKIPLDIYKEVQR 229
           +T  ++G +AS  +  I   K  D  SY +     K + L +  +    IP ++ + ++R
Sbjct: 201 VTNYLIGNNASYYINSIVTAKLFDESSYAIYGINEKQNKLRTLFIDDEYIPTNLVEAIKR 260

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
            + L  Q +G   I R D+  +   ++  ++EIN  P  +  S
Sbjct: 261 QSILIAQTLGVHDICRIDYRVNVSKQEFDFIEINSAPRFSSTS 303


>gi|317034958|ref|XP_001400807.2| D-alanine--D-alanine ligase [Aspergillus niger CBS 513.88]
          Length = 351

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 89/311 (28%), Positives = 136/311 (43%), Gaps = 47/311 (15%)

Query: 23  ASALEDAGFKVSQIDVDRSVGLVLAHLKP---DLAFNVLHGNFG--EDGLVQAILELLEI 77
           A+AL++ G +V  +    S+   LAH +    DLAFN   G  G   +G V A+LE  +I
Sbjct: 41  AAALKNLGHEVVLVPDIHSLVKRLAHGEGSTWDLAFNTTEGLHGLAREGQVPALLEAYQI 100

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN-------------------RFTM 118
           P+T S      L +DK R+K V+    VP  P  +++                   R + 
Sbjct: 101 PFTFSDAATMTLCLDKGRTKMVLEHFNVPTAPFAVIHFDHTAEKTQVSLDEILSMIRMSR 160

Query: 119 DSQHLISP-PYVIKPLKGGSSLGIIVIKKDQSIP--LDLLQSSSWNHGDQL--LIEQYVD 173
            S+ L+S  P  +KPL  GSS GI    K +SI    D++ S   +    L  L+E+Y+ 
Sbjct: 161 HSETLLSQYPLFVKPLAEGSSKGIGATNKIKSIESLCDVVNSLRDSSPSSLGVLVEKYLP 220

Query: 174 GIELTCGVMGDAS----LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE--V 227
           G E T G++G       + V EI    +D ++ E              KI  D  +    
Sbjct: 221 GREFTVGILGTGEDAWVVGVDEIYGASADDWAGEAD----------EIKIGWDDQEADLA 270

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKV-FWLEINVQPGMTP-VSIFPEMAAYAGYSF 285
            + A  A   + CR   R D   D     V   +EIN   G+ P  S  P +A +   S+
Sbjct: 271 CQTALRAWTVLRCRDGGRIDIRMDHSGSPVAHVMEINPLAGLLPHWSQLPMIAEHNNVSY 330

Query: 286 RELLLWMVEDA 296
            EL+ ++++ A
Sbjct: 331 NELIEYILKSA 341


>gi|224091078|ref|XP_002309171.1| predicted protein [Populus trichocarpa]
 gi|222855147|gb|EEE92694.1| predicted protein [Populus trichocarpa]
          Length = 931

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 92/383 (24%), Positives = 153/383 (39%), Gaps = 87/383 (22%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVS--QIDVD------------------- 39
           + ++ GG S+ER +SL+S ++    +E    +VS   ID D                   
Sbjct: 84  VGLICGGPSAERGISLNSARSVLDHIEGDDLQVSCYYIDYDMNAFAISSAQVYSNTPADF 143

Query: 40  -----------RSVGLVLAHLKP--DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
                       S+     HL    D+ F V+HG FGEDG +Q +LE   +P+  +G   
Sbjct: 144 DFKLESLAKGFSSLDEFAEHLAASVDIVFPVIHGRFGEDGGIQELLERHNVPFVGTGSRE 203

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNR-----------FTMDSQHLISPPYVIKPLKG 135
              + DK  +   +S  G    PS LV             FT +     S   V+KP + 
Sbjct: 204 CRKAFDKYDASLELSKQGFITVPSFLVQGSEIEECELSKWFTSNQLDPNSGKVVVKPARA 263

Query: 136 GSSLGIIV---IKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDAS----- 186
           GSS+G+ V   +        DL+   S    D++L+E +++ G E T  V+   S     
Sbjct: 264 GSSIGVTVAYGVSDSLKKANDLI---SEGIDDKILVEIFLEGGSEFTAIVLDVGSGFDCH 320

Query: 187 ---LDVTEIAV---------PKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFL 233
              L  TE+ +          +   ++Y  KY  +    +  P + PL + + ++  A +
Sbjct: 321 PVVLLPTEVEIQFHGSVDVREEDAIFNYRRKYLPTQQVAYHTPPRFPLKVIENIREGASI 380

Query: 234 AHQAIGCRGISRSDFLFDPLSR----------------KVFWLEINVQPGMTPVSIFPEM 277
             + +G R  +R D  F P S                  + + +IN+  GM   S   + 
Sbjct: 381 LFRQLGLRDFARIDGWFLPNSMHALSSSAGKFGRTELGTIIYNDINLISGMEQTSFLFQQ 440

Query: 278 AAYAGYSFRELLLWMVEDASCLR 300
           A+  G+S   +L  ++  A CLR
Sbjct: 441 ASKVGFSHSNILRSVIHRA-CLR 462



 Score = 52.4 bits (124), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 69/312 (22%), Positives = 120/312 (38%), Gaps = 82/312 (26%)

Query: 55  FNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS---SCGVPVCPSI 111
           F  +HG  GEDG +Q++LE   +P+T  G  AS   MDK+ +   +S     G+     +
Sbjct: 617 FIAVHGGIGEDGTLQSLLESEGVPHTGPGAAASKTCMDKVATSLALSHLADLGI-----L 671

Query: 112 LVNRFTMDSQHLISPPYV----------------IKPLKGGSSLGI--IVIKKDQSIPLD 153
            +N+     + L++ P +                +KP + G S G+  +   +D ++ + 
Sbjct: 672 TINKDVCRKEDLLNMPALEIWDELISKLQCETLCVKPARDGCSTGVARLCCVEDLAVYIK 731

Query: 154 LLQ---------SSSWNHG---------DQLLIEQYVDG--------------------- 174
            L+         S S +HG         ++L+ E +++                      
Sbjct: 732 ALKDCLLRIPPDSFSKSHGMIEMPSPPPERLIFEPFIETDEIVVSSKSGGEKAQGLVWKG 791

Query: 175 ----IELTCGVMGD----ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE 226
               +E+T GV+G      SL  +       D  S E K+      ++ P    +   + 
Sbjct: 792 NSRWVEITVGVIGTLGSMRSLSPSVTVKETGDILSLEEKFQGGTGINLTPPPASIVSNEA 851

Query: 227 VQRLAF---LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA----- 278
           ++R      L    +   G SR D   +  S +V  +E+N  PGMTP ++    A     
Sbjct: 852 LERCKHRIELIANTLQLEGFSRIDAFLNVDSGEVLIIEVNTVPGMTPSTVLIHQALAEQP 911

Query: 279 -AYAGYSFRELL 289
             Y    FR LL
Sbjct: 912 PMYPHKFFRTLL 923


>gi|205356768|ref|ZP_03223527.1| D-alanine-D-alanine ligase [Campylobacter jejuni subsp. jejuni
           CG8421]
 gi|205345335|gb|EDZ31979.1| D-alanine-D-alanine ligase [Campylobacter jejuni subsp. jejuni
           CG8421]
          Length = 346

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 59/235 (25%), Positives = 113/235 (48%), Gaps = 9/235 (3%)

Query: 49  LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
           L+ +   N++HG  GEDG + A+ E   I +    + AS LS +K  +K    S GV   
Sbjct: 85  LECECVINLIHGRDGEDGKIAALFEFYSIKFIGPRLEASVLSFNKELTKLYAKSVGVKTL 144

Query: 109 PSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168
              +V R   +S+  +S P +IKP + GSS+GI ++K ++   L+  +   +   + L++
Sbjct: 145 DYTMV-RKGQNSKEKLSFPCIIKPARLGSSIGISIVKDEKD--LEYAKDVGFEFDNDLVV 201

Query: 169 EQYVDGIELT--CGVMGDASLDVTEIAVP-KSDFYSYELKYSSLNS-THVLPAKIPLDIY 224
           E++ + I+     G M +     + I  P K +F  +E KY S +    ++ A +  ++ 
Sbjct: 202 EEFKNNIKEYNLAGCMINDEFVFSIIEEPKKKEFLDFEQKYLSFSGHNELIEANLSEELK 261

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279
           ++++      +  +    + R DF    L  +++  EIN  PG     +F + + 
Sbjct: 262 EKLKDSFKKIYNPLFKGALIRCDFFI--LDNEIYLNEINPNPGSLANYLFKDFST 314


>gi|148269503|ref|YP_001243963.1| methyltransferase type 11 [Thermotoga petrophila RKU-1]
 gi|281411779|ref|YP_003345858.1| Methyltransferase type 11 [Thermotoga naphthophila RKU-10]
 gi|147735047|gb|ABQ46387.1| Methyltransferase type 11 [Thermotoga petrophila RKU-1]
 gi|281372882|gb|ADA66444.1| Methyltransferase type 11 [Thermotoga naphthophila RKU-10]
          Length = 637

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 75/299 (25%), Positives = 128/299 (42%), Gaps = 28/299 (9%)

Query: 15  SLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--DLAFNVLHGNFGED----GLV 68
           ++   KA   +L+  G+  S +D   ++   L  LK   D  FN+    F  D      V
Sbjct: 329 TIDQMKAALRSLK--GYNFSYLDNHDTLITDLMKLKGKIDYVFNLCDEGFNNDPRKEAHV 386

Query: 69  QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPY 128
            A+LE+L IPYT SG     L  DK   + +    G+PV  ++ +       +     P 
Sbjct: 387 PALLEMLGIPYTGSGPQTLVLCYDKSLIRGIAREMGIPVPRAVFIKPEDTTFELPFPFPA 446

Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIEQYVDGIELTCGVMG 183
           ++KP  G SS G I  K     P +L+ + S     + +   +L+E+++ G +L+ G++G
Sbjct: 447 IVKPNFGDSSFG-ITQKSVVYTPEELINAVSEIRNKFGYDKPVLVEEFLTGKDLSVGIIG 505

Query: 184 DASLDVTEIAVPKSDFYS----------YELKY---SSLNSTHVLPAKIPLDIYKEVQRL 230
           +       + + + D+ +          YE K+   S   +   +PA +P +  K +   
Sbjct: 506 NPPDSYMVLPIIEEDYSALPPELPRICGYEAKWLPDSPYWNIKSIPADLPEETEKFIIDC 565

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
                + + CR   R D+  D        LE+N  PG        +MA  AG S+ E+L
Sbjct: 566 CLKLFERLECRDYCRFDWRLDAEGNPKL-LEVNPNPGWCWDGHLAKMAKIAGMSYAEML 623


>gi|57237643|ref|YP_178891.1| D-alanyl-alanine synthetase A [Campylobacter jejuni RM1221]
 gi|121612276|ref|YP_001000487.1| D-alanyl-alanine synthetase A [Campylobacter jejuni subsp. jejuni
           81-176]
 gi|167005423|ref|ZP_02271181.1| D-alanyl-alanine synthetase A [Campylobacter jejuni subsp. jejuni
           81-176]
 gi|81353739|sp|Q5HUZ4|DDL_CAMJR RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|189083036|sp|A1VZE6|DDL_CAMJJ RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|57166447|gb|AAW35226.1| D-alanine--D-alanine ligase [Campylobacter jejuni RM1221]
 gi|87249415|gb|EAQ72375.1| D-alanine--D-alanine ligase [Campylobacter jejuni subsp. jejuni
           81-176]
 gi|315058252|gb|ADT72581.1| D-alanine--D-alanine ligase [Campylobacter jejuni subsp. jejuni S3]
          Length = 346

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 59/235 (25%), Positives = 113/235 (48%), Gaps = 9/235 (3%)

Query: 49  LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
           L+ +   N++HG  GEDG + A+ E   I +    + AS LS +K  +K    S GV   
Sbjct: 85  LECECVINLIHGRDGEDGKIAALFEFYSIKFIGPRLEASVLSFNKELTKLYAKSVGVKTL 144

Query: 109 PSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168
              +V R   +S+  +S P +IKP + GSS+GI ++K ++   L+  +   +   + L++
Sbjct: 145 DYTMV-RKGQNSKEKLSFPCIIKPARLGSSIGISIVKDEKD--LEYAKDVGFEFDNDLVV 201

Query: 169 EQYVDGIELT--CGVMGDASLDVTEIAVP-KSDFYSYELKYSSLNS-THVLPAKIPLDIY 224
           E++ + I+     G M +     + I  P K +F  +E KY S +    ++ A +  ++ 
Sbjct: 202 EEFKNNIKEYNLAGCMINDEFVFSIIEEPKKKEFLDFEQKYLSFSGHNELIEANLSEELK 261

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279
           ++++      +  +    + R DF    L  +++  EIN  PG     +F + + 
Sbjct: 262 EKLKDSFKKIYNPLFKGALIRCDFFI--LDNEIYLNEINPNPGSLANYLFKDFST 314


>gi|317009252|gb|ADU79832.1| D-alanyl-alanine synthetase A [Helicobacter pylori India7]
          Length = 347

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 75/321 (23%), Positives = 135/321 (42%), Gaps = 47/321 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDA----------------------GFKVSQIDV 38
             VL GG S E E+S+ S  A    L+D                           +QI  
Sbjct: 3   FCVLFGGASFEHEISIVSAIALKGVLKDRIKYFIFLDENHHFYLIEESNMHSKYFAQIKE 62

Query: 39  DRSVGLVLAH-------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
            +   L+LAH             ++  L  N++HG  GEDG + ++LE   I +    I 
Sbjct: 63  KKLPPLILAHNGLLKNSFLGTKIIELPLVINLVHGGDGEDGKLASLLEFYRIAFIGPRIE 122

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVN-RFTMDSQHLI--SPPYVIKPLKGGSSLGII 142
           AS LS +K  +K      GV     +L+N +   ++ +L+  + P+++KP   GSSLG+ 
Sbjct: 123 ASVLSYNKYLTKLYAKDLGVKTLDCVLLNEKNRANALNLMNFNFPFIVKPNSAGSSLGVS 182

Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE----LTCGVMGDASLDVTEIAVPKSD 198
           V+K+++ +   L    ++ +  ++LIE ++ G++      C +  D      E    K +
Sbjct: 183 VVKEEKELIYAL--DGAFEYSKEVLIEPFIQGVKEYNLAGCKIKKDFCFSYVE-EPNKQE 239

Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
           F  ++ KY   +      A +   + ++++      +  +    I R DF    +  +V+
Sbjct: 240 FLDFKQKYLDFSRNKAPKANLSNALEEQLKENFKKLYNDLFDGAIIRCDFFV--IENEVY 297

Query: 259 WLEINVQPGMTPVSIFPEMAA 279
             EIN  PG     +F +   
Sbjct: 298 LNEINPIPGSLANYLFDDFKT 318


>gi|332798138|ref|YP_004459637.1| D-alanine--D-alanine ligase [Tepidanaerobacter sp. Re1]
 gi|332695873|gb|AEE90330.1| D-alanine--D-alanine ligase [Tepidanaerobacter sp. Re1]
          Length = 336

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 79/289 (27%), Positives = 132/289 (45%), Gaps = 30/289 (10%)

Query: 31  FKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ--AILELLEIPYTHSGILASA 88
           F+ S +  D  +   L +    L FN+ +G  GE    Q  AILE   IPYT S IL   
Sbjct: 42  FECSLVKADSDIISKLQNENVSLVFNLCNGIRGETRQAQIPAILEFSGIPYTGSSILGHT 101

Query: 89  LSMDKMRSKQVVSSCGV--PVCPSILVNRFTMDSQHL-ISPPYVIKPLKGGSSLGIIVIK 145
           L+++K  + +V    GV  P   SI      M  ++  I  P ++KP   GS  GI    
Sbjct: 102 LAINKNYACKVFKGSGVTTPEFISIYDKDDLMQLRNKEIKFPVLVKPCDEGSGRGI---- 157

Query: 146 KDQSIPLDL------LQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS-------LDVTEI 192
              S+  D       +Q     +   +++ +Y+ G E T G++G+ +       L+++  
Sbjct: 158 HQDSLVYDFRSLKRKVQQELRLYNPPIMVTEYIKGREFTVGILGNGNNLKVLPILEISFE 217

Query: 193 AVPK--SDFYSYELKYSSLNSTHVLPAKIPLD--IYKEVQRLAFLAHQAIGCRGISRSDF 248
           A+P   + FYS+E+K +  + T +     PLD  +  +++  A  A+ A+  R  +R D 
Sbjct: 218 ALPDDLAKFYSFEVKANYADKT-IFRCPAPLDNKLKTKIENTAKKAYNALSLRDYARVDV 276

Query: 249 LFDPLSRKVFWLEINVQPGMTP-VSIFPEMAAYAGYSFRELLLWMVEDA 296
                    + LE+N  PG+    S   +MA+     +  L+L +VE+A
Sbjct: 277 RVK--DDTPYVLEVNSLPGLQKGYSDITKMASACNLGYEGLILKIVENA 323


>gi|296272621|ref|YP_003655252.1| D-alanine/D-alanine ligase [Arcobacter nitrofigilis DSM 7299]
 gi|296096795|gb|ADG92745.1| D-alanine/D-alanine ligase [Arcobacter nitrofigilis DSM 7299]
          Length = 344

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 61/236 (25%), Positives = 107/236 (45%), Gaps = 10/236 (4%)

Query: 48  HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV 107
           +++ D+  N++HG  GEDG V ++ E  +I Y    + A ++S +K  +K   SS G+  
Sbjct: 84  NVEFDIVLNLIHGGDGEDGTVASLFEFFDIKYIGPRVGACSVSFNKFLTKGYASSLGIKT 143

Query: 108 CPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL 167
            P     +F  D   +   P ++KP+  GSS+G+ ++K  + +   L    ++   + +L
Sbjct: 144 IPYKYFTKF--DEISVDEFPVIVKPVTLGSSIGVSIVKTKEELSYAL--DVAFEFDNAVL 199

Query: 168 IEQYVDGIELT--CGVMGDASLDVTEIAVP-KSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           IE +V  I+     G      +  + I  P K+DF  ++ KY     T  +      D  
Sbjct: 200 IETFVPNIKEYNLAGYKIGNEIKYSIIEEPQKADFLDFDKKYLDFARTERVSVANISDEL 259

Query: 225 KEVQRLAFLA-HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279
           KE  + AF   +       + R DF    +  +V+  EIN  PG     +F +  A
Sbjct: 260 KEKLKKAFATIYNTTFNDAMIRCDFFV--IDDEVYLNEINPIPGSMANYLFEDFDA 313


>gi|261839442|gb|ACX99207.1| D-alanyl-alanine synthetase A [Helicobacter pylori 52]
          Length = 347

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 75/321 (23%), Positives = 134/321 (41%), Gaps = 47/321 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---------LAHLKP 51
             VL GG S E E+S+ S  A   AL+D       +D +    L+          A +K 
Sbjct: 3   FCVLFGGASFEHEISIVSAIALKEALKDRIKYFIFLDENHHFYLIEESNMHSKYFAQIKE 62

Query: 52  D--------------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
                                      L  N++HG  GEDG + ++LE   I +    I 
Sbjct: 63  KKLPPLILTRNGLLKNSFLGAKIIELPLVINLVHGGDGEDGKLASLLEFYRIAFIGPRIE 122

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVN-RFTMDSQHLI--SPPYVIKPLKGGSSLGII 142
           AS LS +K  +K      GV     +L+N +   ++ +LI  + P+++KP   GSSLG+ 
Sbjct: 123 ASVLSYNKYLTKLYAKDLGVKTLDYVLLNEKNRANALNLIGFNFPFIVKPSNAGSSLGVS 182

Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE----LTCGVMGDASLDVTEIAVPKSD 198
           V+K+++ +   L   S++ +  ++LIE ++ G++      C +  D      E    K +
Sbjct: 183 VVKEEKELIYAL--DSAFEYSKEILIEPFIQGVKEYNLAGCKIKKDFCFSYIE-EPNKQE 239

Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
           F  ++ KY   +      A +   + ++++      +  +    + R DF    +  +V+
Sbjct: 240 FLDFKQKYLDFSRNKAPKANLSNALEEQLKENFKKLYNDLFDGALIRCDFFV--IENEVY 297

Query: 259 WLEINVQPGMTPVSIFPEMAA 279
             EIN  PG     +F +   
Sbjct: 298 LNEINPIPGSLANYLFDDFKT 318


>gi|222823640|ref|YP_002575214.1| D-alanine--D-alanine ligase [Campylobacter lari RM2100]
 gi|254767723|sp|B9KFX8|DDL_CAMLR RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|222538862|gb|ACM63963.1| D-alanine--D-alanine ligase [Campylobacter lari RM2100]
          Length = 346

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 74/271 (27%), Positives = 127/271 (46%), Gaps = 19/271 (7%)

Query: 15  SLSSG---KACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAI 71
           + SSG   K  A  L+  GF +  +       L    L  D+A N++HG  GEDG + A+
Sbjct: 55  TFSSGAYKKEKALVLKQGGFFIKTM-------LGEKKLDMDVAVNIVHGKDGEDGKIAAL 107

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIK 131
           L+   I Y    I AS LS +K  +K    S GV      ++N     +  L S P ++K
Sbjct: 108 LDFYGIKYIGPRIEASVLSFNKALTKLYAQSVGVKTLDYKVLNLHKEQNVSL-SFPCILK 166

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDV 189
           P + GSS+GI ++ KD+S  L   +  ++   + +++EQ+V  I+     G M    ++ 
Sbjct: 167 PARLGSSIGISIV-KDES-ELKYAKDVAFEFDEDVVVEQFVSNIKEYNLAGCMIGEKMEF 224

Query: 190 TEIAVP-KSDFYSYELKYSSLN-STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           + I  P K++   +E KY   + S+ V  A I  ++ ++++      +  +    + R D
Sbjct: 225 SIIEEPRKNEILDFEQKYLGFSESSKVSEANISEELKQKLRDNFTRIYNPLFKGALIRCD 284

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278
           F    +  +V+  EIN  PG     +F +  
Sbjct: 285 FF--VIDDEVYLNEINPNPGSLANYLFEDFT 313


>gi|308063477|gb|ADO05364.1| D-alanyl-alanine synthetase A [Helicobacter pylori Sat464]
          Length = 347

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 76/321 (23%), Positives = 135/321 (42%), Gaps = 47/321 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---------LAHLK- 50
             VL GG S E E+S+ S  A   AL+D       +D +    L+          A +K 
Sbjct: 3   FCVLFGGASFEHEISIVSAIALKEALKDRIKYFIFLDENHHFYLIEESNMHSKYFAQIKE 62

Query: 51  ---PDLAF----------------------NVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
              P L F                      N++HG  GEDG + ++LE   I +    I 
Sbjct: 63  KKLPPLIFTRNGLLKNSFLGAKIIELPLVINLVHGGDGEDGKLASLLEFYRIAFIGPRIE 122

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVN-RFTMDSQHLI--SPPYVIKPLKGGSSLGII 142
           AS LS +K  +K      GV     +L+N +   ++ +LI  + P+++KP   GSSLG+ 
Sbjct: 123 ASVLSYNKYLTKLYAKDLGVKALDHVLLNEKNRANALNLIGFNFPFIVKPSNAGSSLGVS 182

Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE----LTCGVMGDASLDVTEIAVPKSD 198
           V+K+++ +   L    ++ +  ++LIE ++ G++      C +  D      E    K +
Sbjct: 183 VVKEEKELIYAL--DGAFEYSKEILIEPFIQGVKEYNLAGCKIKKDFCFSYVE-EPNKQE 239

Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
           F  ++ KY   +      A +   + ++++      +  +    + R DF    +  +V+
Sbjct: 240 FLDFKQKYLDFSRNKAPKANLSNALEEQLKENFKKLYNDLFDGALIRCDFFV--IENEVY 297

Query: 259 WLEINVQPGMTPVSIFPEMAA 279
             EIN  PG     +F +   
Sbjct: 298 LNEINPIPGSLANYLFDDFKT 318


>gi|307750582|gb|ADN92458.1| truncated D-alanine D-alanine ligase [Enterococcus faecium]
          Length = 230

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 42/133 (31%), Positives = 72/133 (54%), Gaps = 11/133 (8%)

Query: 53  LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--S 110
           + F VLHG  GEDG +Q  LE L +PY  +G+L SA +MDK+ +K ++ + GVP  P   
Sbjct: 92  IVFPVLHGPNGEDGTIQGFLETLNMPYVGAGVLTSACAMDKIMTKYILQAAGVPQVPYVP 151

Query: 111 ILVNRFTMDSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
           +L N++  + + +          P  +KP   GSS+GI   K +    L    ++++ + 
Sbjct: 152 VLKNQWKENPKKVFDQCEGSLLYPMFVKPANMGSSVGI--TKAENREELQNALATAYQYD 209

Query: 164 DQLLIEQYVDGIE 176
            + ++EQ ++  E
Sbjct: 210 SRAIVEQGIEARE 222


>gi|317180500|dbj|BAJ58286.1| D-alanyl-alanine synthetase A [Helicobacter pylori F32]
          Length = 347

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 75/321 (23%), Positives = 132/321 (41%), Gaps = 47/321 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDA----------------------GFKVSQIDV 38
             VL GG S E E+S+ S  A    L+D                           +QI  
Sbjct: 3   FCVLFGGASFEHEISIVSAIALKETLKDRIKYFIFLDENHHFYLVEESNMHSKYFAQIKE 62

Query: 39  DRSVGLVLAH-------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
            +   L+L H             ++  L  N++HG  GEDG + ++LE   I +    I 
Sbjct: 63  KKLPPLILTHNGLLKNSFLGTKIIELPLVINLVHGGDGEDGKLASLLEFYRIAFIGPRIE 122

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVN-RFTMDSQHLI--SPPYVIKPLKGGSSLGII 142
           AS LS  K  +K      G+     +LVN +   ++  LI  + P++IKP   GSSLG+ 
Sbjct: 123 ASVLSYSKYLTKLYAKDLGIKTLDCVLVNEKNRANALDLIGFNLPFIIKPSNAGSSLGVS 182

Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE----LTCGVMGDASLDVTEIAVPKSD 198
           V+K+++ +   L    ++ +  ++LIE ++ G++      C +  D      E    K +
Sbjct: 183 VVKEEKELIYAL--DGAFEYSKEVLIEPFIQGVKEYNLAGCKIKKDFCFSYVE-EPNKQE 239

Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
           F  ++ KY   +      A +   + ++++      +  +    + R DF    +  +V+
Sbjct: 240 FLDFKQKYLDFSRNKAPKANLSNTLEEQLKENFKKLYNDLFDGALIRCDFFV--IENEVY 297

Query: 259 WLEINVQPGMTPVSIFPEMAA 279
             EIN  PG     +F +   
Sbjct: 298 LNEINPIPGSLANYLFDDFKT 318


>gi|186474632|ref|YP_001863603.1| D-alanine--D-alanine ligase [Burkholderia phymatum STM815]
 gi|184198591|gb|ACC76553.1| D-alanine--D-alanine ligase [Burkholderia phymatum STM815]
          Length = 357

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 64/249 (25%), Positives = 114/249 (45%), Gaps = 33/249 (13%)

Query: 53  LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS---------- 102
              N+L+GNFGEDG +Q    +  +P +   +LA++L+M K    Q ++S          
Sbjct: 88  FVLNLLYGNFGEDGKIQGAAAIASVPGSFGPVLAASLAMSKYHMNQYIASAHPVVQIPDT 147

Query: 103 -----CGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD----QSIPLD 153
                C +P   + + +RF     H +    V+KP   G+SL       D    +SI  +
Sbjct: 148 LLLRECDLPEASTRIFDRF-----HGME--IVVKPNSLGASLFTNRYLVDPECIESIKTN 200

Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV---PKSDFYSYELKYSSLN 210
           L +   + +    L+++YV G E + G +      +   AV    +  F+ +E K+ S  
Sbjct: 201 LAE--IFEYDANALVQRYVSGTEYSIGCLQKNETVMVLPAVRIETEGAFFGHEEKHRSGK 258

Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270
           +  ++  +    + K +  L+    +++  R + R DF+  P    +F+LE N  PG+  
Sbjct: 259 ANEIIIME-ESPVVKSLGDLSIEIFKSVDFRNMCRFDFIVSP-EEAIFFLEANTIPGLMR 316

Query: 271 VSIFPEMAA 279
            SIFP+M A
Sbjct: 317 NSIFPKMLA 325


>gi|315185431|gb|EFU19202.1| D-alanine--D-alanine ligase [Spirochaeta thermophila DSM 6578]
          Length = 648

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 66/264 (25%), Positives = 114/264 (43%), Gaps = 27/264 (10%)

Query: 50  KPDLAFNVLHGNFGEDGL----VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV 105
           K D  FN+    F  D      V A+LE+L IPYT +     A   DK   + V    GV
Sbjct: 373 KVDYVFNLCDEGFFNDPRKELHVPALLEMLGIPYTGATPQGLAFCYDKSLVRGVAKEMGV 432

Query: 106 PVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS------SS 159
           PV  +  ++  ++  +     P ++KP  G SS GI   +K     LD L +       +
Sbjct: 433 PVPRAFFIDPTSIVFEVPFGFPMIVKPNLGDSSFGI--TQKSVVWSLDELSACISEIRDT 490

Query: 160 WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYS----------YELKY--- 206
           + +   +L+E+++ G +LT G++G+ + D   + + + D+ +          YE K+   
Sbjct: 491 FGYEKPVLVEEFLTGKDLTVGIIGNPTDDYMVLPIVEEDYSALPPELPRICGYEAKWLPD 550

Query: 207 -SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                +   +PA +P +  K +        + + CR  +R D+  D      + LE+N  
Sbjct: 551 SPYWKALRSIPAGLPEETEKSIVEWCVRLFERLECRDYARFDWRCD-ADGNPYLLEVNPN 609

Query: 266 PGMTPVSIFPEMAAYAGYSFRELL 289
           PG        +MA  AG  +  +L
Sbjct: 610 PGWCWDGHLAKMARLAGMEYPRML 633


>gi|327399078|ref|YP_004339947.1| type 11 methyltransferase [Hippea maritima DSM 10411]
 gi|327181707|gb|AEA33888.1| Methyltransferase type 11 [Hippea maritima DSM 10411]
          Length = 661

 Score = 73.9 bits (180), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 78/279 (27%), Positives = 123/279 (44%), Gaps = 32/279 (11%)

Query: 46  LAHLKP--DLAFNVLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
           L  LKP  D  FN+    F  +      + A+LE+L IPYT S     A   DK   + V
Sbjct: 354 LIKLKPKIDFVFNLCDEGFNNEPTKELYIPALLEMLNIPYTGSNPQCLAYCYDKSLIRGV 413

Query: 100 VSSCGVPVCPSILVNRFTMDSQHLISP---PYVIKPLKGGSSLGI----IVIKKDQSIPL 152
               G+PV   ILV   T D   L  P   P ++KP  G SS GI    +V   D+ I +
Sbjct: 414 AKEMGIPVPKGILV---TPDKTVLELPFNFPAIVKPNFGDSSFGITKKSVVYTMDELIEV 470

Query: 153 DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYS----------Y 202
                  + H   +LIE+++ G +LT G++G+ S +   + + + D+            Y
Sbjct: 471 LSEIKEQFGHDKPVLIEEFLTGSDLTIGIIGNISGNYKILPIIEEDYSKLPDDLPKICGY 530

Query: 203 ELKY----SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
           E K+       N+T  L A++  +  + +   +    + +      R D+  D  S+   
Sbjct: 531 EAKWLPGSPYWNNTSRL-AQLDEETERIIVESSLKLWERLNVNDYCRFDWRLDSESKPKL 589

Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
            LE+N  PG        +MA  AG S+ E+L  ++E A+
Sbjct: 590 -LEVNPNPGWCWDGHLAKMAKIAGISYGEMLNMILEAAA 627


>gi|157415069|ref|YP_001482325.1| D-alanyl-alanine synthetase A [Campylobacter jejuni subsp. jejuni
           81116]
 gi|189083034|sp|A8FLL1|DDL_CAMJ8 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|157386033|gb|ABV52348.1| putative D-alanine--D-alanine ligase [Campylobacter jejuni subsp.
           jejuni 81116]
 gi|315931216|gb|EFV10188.1| D-alanine--D-alanine ligase family protein [Campylobacter jejuni
           subsp. jejuni 327]
          Length = 346

 Score = 73.9 bits (180), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 59/233 (25%), Positives = 112/233 (48%), Gaps = 9/233 (3%)

Query: 49  LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
           L+ +   N++HG  GEDG + A+ E   I +    + AS LS +K  +K    S GV   
Sbjct: 85  LECECVINLIHGRDGEDGKIAALFEFYSIKFIGPRLEASVLSFNKELTKLYAKSVGVKTL 144

Query: 109 PSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168
              ++ R   +S+  +S P +IKP + GSS+GI ++K ++   L+  +   +   + L++
Sbjct: 145 DYTML-RKNQNSKEKLSFPCIIKPARLGSSIGISIVKDEKD--LEYAKDVGFEFDNDLVV 201

Query: 169 EQYVDGIELT--CGVMGDASLDVTEIAVP-KSDFYSYELKYSSLNS-THVLPAKIPLDIY 224
           E++ + I+     G M +     + I  P K +F  +E KY S +    ++ A +  ++ 
Sbjct: 202 EEFKNNIKEYNLAGCMINDEFVFSIIEEPKKKEFLDFEQKYLSFSGHNELIEADLSEELK 261

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
           ++++      +  +    + R DF    L  +V+  EIN  PG     +F + 
Sbjct: 262 EKLKDSFKKIYNPLFKGALIRCDFFI--LDNEVYLNEINPNPGSLANYLFKDF 312


>gi|330874974|gb|EGH09123.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. glycinea str.
           race 4]
          Length = 154

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 46/141 (32%), Positives = 76/141 (53%), Gaps = 4/141 (2%)

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
            +  Q+L+EQ++ G E T   +    L    +  P S FY Y+ KY + ++ + +P  + 
Sbjct: 16  TYDSQVLVEQWIQGPEFTVASLRGQVLPPIGLGTPHS-FYDYDAKYLASDTQYRIPCGLG 74

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL-EINVQPGMTPVSIFPEMAA 279
               +E+++LA  A  AIG  G +R+D + D   +  FWL E+N  PGMT  S+ P  A 
Sbjct: 75  DAQEQELKQLAARACDAIGIAGWARTDVMQDAQGK--FWLLEVNTVPGMTDHSLVPMAAR 132

Query: 280 YAGYSFRELLLWMVEDASCLR 300
            AG  F++L+L ++ D+   R
Sbjct: 133 AAGLDFQQLVLAILADSVQAR 153


>gi|283957219|ref|ZP_06374681.1| D-alanine--D-alanine ligase [Campylobacter jejuni subsp. jejuni
           1336]
 gi|283791291|gb|EFC30098.1| D-alanine--D-alanine ligase [Campylobacter jejuni subsp. jejuni
           1336]
          Length = 346

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 58/226 (25%), Positives = 109/226 (48%), Gaps = 9/226 (3%)

Query: 56  NVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR 115
           N++HG  GEDG + A+ E   I +    + AS LS +K  +K    S GV      ++ R
Sbjct: 92  NLIHGRDGEDGKIAALFEFYSIKFIGPRLEASVLSFNKELTKLYAKSVGVKTLDYTML-R 150

Query: 116 FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175
              +S+  +S P +IKP + GSS+GI ++K ++   L+  +   +   + L++E++ + I
Sbjct: 151 KNQNSKEKLSFPCIIKPARLGSSIGISIVKDEKD--LEYAKDVGFEFDNDLVVEEFKNNI 208

Query: 176 ELT--CGVMGDASLDVTEIAVP-KSDFYSYELKYSSLNS-THVLPAKIPLDIYKEVQRLA 231
           +     G M +     + I  P K +F  +E KY S +    ++ A +  ++ ++++   
Sbjct: 209 KEYNLAGCMINDEFVFSIIEEPKKKEFLDFEQKYLSFSGHNELIEADLSEELKEKLKDSF 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
              +  +    + R DF    L  +V+  EIN  PG     +F + 
Sbjct: 269 KKIYNPLFKGALIRCDFFI--LDNEVYLNEINPNPGSLANYLFKDF 312


>gi|255943331|ref|XP_002562434.1| Pc18g06070 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211587167|emb|CAP94831.1| Pc18g06070 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 366

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 89/316 (28%), Positives = 140/316 (44%), Gaps = 44/316 (13%)

Query: 20  KACASALEDAGFKVSQIDVDRSVGLVLA---HLKPDLAFNVLHGNFG--EDGLVQAILEL 74
           +A  S L+  G +V+ +    S+   LA   H   DLAFN+  G  G   +  V A+L  
Sbjct: 42  QAVLSTLKKLGHQVTLVPGIESLVQQLAAGKHKCWDLAFNMAQGFHGPARESQVPALLGA 101

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN---------RFTMDSQHLIS 125
            ++P+T +     AL  +K  +K V++   +P  P +++          +FT      + 
Sbjct: 102 YQVPHTFADAATMALCQNKANTKMVLNHHNIPTAPFVVIPASEPADSLIKFTTSG---LQ 158

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGDQLLIEQYVDGIELTCGV 181
            P  +KP+  GSS GI    K ++ P +L     Q  S    + +L+E ++ G E T G+
Sbjct: 159 YPLFVKPVTEGSSKGIDGFNKVKN-PAELEPAVHQLRSKFPAEDILVEPFLSGREFTVGI 217

Query: 182 MGDASLDVTEIAV-------PKSDFYS-----YELKYSSLNSTHVLPAKIPLD---IYKE 226
           +G A  D   I V       P +DF +      +L+++S  S       IP D    + +
Sbjct: 218 LG-AGEDSRVIGVREFIWKKPSADFTNGVDGHPDLEFASRWSKSSRNKLIPRDQDLTHPQ 276

Query: 227 VQ---RLAFLAHQAIGCRGISRSDFLFDPLSRKVF--WLEINVQPGMTP-VSIFPEMAAY 280
           VQ   R++  A +  GCR   R D  FD          LE+N   G+ P  S  P  A  
Sbjct: 277 VQAACRVSLDAWKVFGCRDAGRVDIRFDSDEPDAVPNILEVNPISGLLPDHSPLPACAES 336

Query: 281 AGYSFRELLLWMVEDA 296
            G S+ ELL  ++E A
Sbjct: 337 NGISYAELLGAIIESA 352


>gi|289524162|ref|ZP_06441016.1| D-ala D-ala ligase [Anaerobaculum hydrogeniformans ATCC BAA-1850]
 gi|289502818|gb|EFD23982.1| D-ala D-ala ligase [Anaerobaculum hydrogeniformans ATCC BAA-1850]
          Length = 353

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 79/298 (26%), Positives = 142/298 (47%), Gaps = 26/298 (8%)

Query: 15  SLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG---NFGEDGLVQAI 71
           S S+  A A  +E  GFK    + +  +   LA+ + D  FN+  G     G +  +  +
Sbjct: 41  SQSTVDALAKEIESFGFKTLLCEQNEDLPSKLANQRLDFMFNIAEGIGTERGRESQIPCL 100

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------IS 125
           LE L IPY+ S  ++ A+S+DK  +  V++   VPV P + + R   D +++       +
Sbjct: 101 LESLGIPYSGSDPVSLAISLDKYLTNVVLNRENVPV-PFMTLFRSEDDLRNVDMLFQDNN 159

Query: 126 PPYVIKPLKGGSSLGII---VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
             Y+ KP   GSS G+    + +    +  ++L+     +    +IE ++ GIE+T G++
Sbjct: 160 ETYIAKPRWEGSSKGVFRDSICRNPNELKRNVLRIFE-RYRQPAIIEAFLPGIEITAGIV 218

Query: 183 GDAS----LDVTEIA--VPKSD---FYSYELKYSSLNST-HVLPAKIPLDIYKEVQRLAF 232
           G+ S    L + +I+   P  D    YS E K   L    +  P  I   + +E   +A 
Sbjct: 219 GNGSDARLLGMMKISERKPSDDGVFLYSLEHKRDWLECILYEGPEAINEKVRREAAMIAL 278

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP-VSIFPEMAAYAGYSFRELL 289
            A  A+  R I+R D   D    ++  ++IN  PG++P  S  P + + +G ++ +L+
Sbjct: 279 DAFHALELRDIARIDMRMDGQG-QLRVIDINPLPGLSPYYSDLPILYSLSGGNYHDLI 335


>gi|15645358|ref|NP_207532.1| D-alanyl-alanine synthetase A [Helicobacter pylori 26695]
 gi|2829460|sp|P56191|DDL_HELPY RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|2313860|gb|AAD07784.1| D-alanine:D-alanine ligase A (ddlA) [Helicobacter pylori 26695]
          Length = 347

 Score = 73.6 bits (179), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 75/321 (23%), Positives = 129/321 (40%), Gaps = 47/321 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDA----------------------GFKVSQIDV 38
             VL GG S E E+S+ S  A    L+D                           +QI  
Sbjct: 3   FCVLFGGASFEHEISIVSAIALKGVLKDRIKYFIFLDENHHFYLIEESNMHSKYFAQIKE 62

Query: 39  DRSVGLVLAH-------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
            +   L+L H             ++  L  N++HG  GEDG + ++LE   I +    I 
Sbjct: 63  KKLPPLILTHNGLLKNSFLGAKIIELPLVINLVHGGDGEDGKLASLLEFYRIAFIGPRIE 122

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILV---NRFTMDSQHLISPPYVIKPLKGGSSLGII 142
           AS LS +K  +K      GV     +L+   NR         + P++IKP   GSSLG+ 
Sbjct: 123 ASVLSYNKYLTKLYAKDLGVKTLDHVLLNEKNRANALDLMNFNFPFIIKPNNAGSSLGVN 182

Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE----LTCGVMGDASLDVTEIAVPKSD 198
           V+K+++ +   L    ++ +  ++LIE ++ G++      C +  D      E    K +
Sbjct: 183 VVKEEKELVYAL--DGAFEYSKEVLIEPFIQGVKEYNLAGCKIKKDFCFSYVE-EPNKQE 239

Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
           F  ++ KY   +      A +   + ++++      +  +    I R DF    +  +V+
Sbjct: 240 FLDFKQKYLDFSRNKAPKANLSNALEEQLKENFKKLYNDLFDGAIIRCDFFV--IKNEVY 297

Query: 259 WLEINVQPGMTPVSIFPEMAA 279
             EIN  PG     +F +   
Sbjct: 298 LNEINPIPGSLANYLFDDFKT 318


>gi|225439600|ref|XP_002265851.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|297735584|emb|CBI18078.3| unnamed protein product [Vitis vinifera]
          Length = 952

 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 92/387 (23%), Positives = 150/387 (38%), Gaps = 95/387 (24%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD--------------------- 39
           + V+ GG S+ER +SL+S ++    ++     VS   +D                     
Sbjct: 79  VGVICGGPSAERGISLNSARSVIDHIQGDDLLVSCYYIDCNLNAYAISPAQVYSNTPTDF 138

Query: 40  -----------RSVGLVLAHLKP--DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
                      RS+     HL    D+ F V+HG FGEDG +Q +LE   IP+  +    
Sbjct: 139 DFKLESLAQGFRSLSDFAEHLAASVDIVFPVIHGRFGEDGGIQELLEKSNIPFVGTRSNE 198

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNR-----------FTMDSQHLISPPYVIKPLKG 135
              + DK  S   +   G    P+ LV             F  +     S   V+KP + 
Sbjct: 199 CRQAFDKYDSSLELDRQGFVTLPNFLVQGSHSNESELSKWFAENHLDTNSGKVVVKPTRA 258

Query: 136 GSSLGIIV-------IKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDAS- 186
           GSS+G+ V       +KK   I  + +        D++L+E +++ G E T  V+   S 
Sbjct: 259 GSSIGVTVAYGVADSLKKANEIIAEGID-------DRVLVEIFLEGGSEFTAIVLDVGSG 311

Query: 187 -------LDVTEIAV---------PKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQR 229
                  L  TE+ +          K   ++Y  KY  +    +  P + P+D+   ++ 
Sbjct: 312 FDCHPVVLLPTEVEIQLHDNADMREKDAIFNYRRKYLPTQQVAYHTPPRFPMDVIGSIRE 371

Query: 230 LAFLAHQAIGCRGISRSDFLFDP----------------LSRKVFWLEINVQPGMTPVSI 273
            A L  Q +G    +R D  F P                 S  V + +IN+  GM   S 
Sbjct: 372 GASLLFQRLGLHDFARIDGWFLPSSILIPSASEKKLGRTKSGTVIFTDINLISGMEQTSF 431

Query: 274 FPEMAAYAGYSFRELLLWMVEDASCLR 300
             + A+  G+S   +L  +++ A CLR
Sbjct: 432 LFQQASKVGFSHSNILRSIIQRA-CLR 457



 Score = 55.8 bits (133), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 73/315 (23%), Positives = 121/315 (38%), Gaps = 88/315 (27%)

Query: 55  FNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS---SCGVPVCPSI 111
           F  +HG  GEDG +Q +LE   +PYT  G+  S + MDK+ +   ++     GV     +
Sbjct: 638 FIAVHGGMGEDGTLQFLLEAGGVPYTGPGVETSKICMDKVATSLALNHLEKFGV-----L 692

Query: 112 LVNRFTMDSQHLISPP----------------YVIKPLKGGSSLGI--IVIKKDQSIPLD 153
            +N+  +  + L++ P                  +KP + G S G+  +   +D ++ + 
Sbjct: 693 TINKKVLRKEDLLNAPVHDIWHDLTSKLQSETLCVKPARDGCSTGVARLCCLEDLAVYVK 752

Query: 154 LLQ---------SSSWNHG----------------------------------DQLLIEQ 170
            L+         S S  HG                                  ++L+ E 
Sbjct: 753 ALEECFLRIPSNSLSKAHGVIEMPSPPPELLIFEPFIETDEIIVSSNAVNDTANRLIWEG 812

Query: 171 YVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE 226
           +   +E+T GV+G      SL  +       D  S E K+      ++ P   PL I  +
Sbjct: 813 HSRWVEVTVGVVGKRGSMHSLTPSVTVKESGDILSLEEKFQGGTGINLTPP--PLSIISK 870

Query: 227 V------QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA-- 278
                  QR+  +A+  +   G SR D   +  S +V  +E+N  PGMTP ++    A  
Sbjct: 871 AALESCKQRIELIAN-TLQLEGFSRIDAFVNVDSGEVLIIEVNTVPGMTPSTVLIHQALA 929

Query: 279 ----AYAGYSFRELL 289
                Y    FR LL
Sbjct: 930 EEPPMYPHRFFRTLL 944


>gi|301336328|ref|ZP_07224530.1| bifunctional D-alanyl-alanine synthetase
           A/UDP-N-acetylmuramate--L-alanine ligase [Chlamydia
           muridarum MopnTet14]
          Length = 802

 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 88/338 (26%), Positives = 144/338 (42%), Gaps = 49/338 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASAL-----EDAGF---------KVSQID--------- 37
           + +L GG S E ++S+ S K  A  L     E  GF         KVS ++         
Sbjct: 449 LGILCGGRSCEHDISILSAKNIARHLSSTFYEVQGFIITREGLWKKVSLLEGTEDSEKSI 508

Query: 38  VDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSK 97
            D  + + L  L  D+   +LHG +GEDG +Q  LE +  PYT   ++ +A+ M+K+ +K
Sbjct: 509 FDSEIAMQLERL--DVIVPILHGPYGEDGAIQGFLETIGKPYTGPSVVFAAIGMNKVLTK 566

Query: 98  QVVSSCGVPVCPSILVN---------RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQ 148
           + +S  G+PV P + +          ++        S P  +K    GSS+G+  +    
Sbjct: 567 RFMSDLGIPVVPYLPLTLTGWKQEPEKWLAQIMKAFSFPMFVKAAHLGSSIGVFEVH--D 624

Query: 149 SIPLDLLQSSSWNHGDQLLIEQYVDGI-ELTCGVMGDAS--LDVTEIAVPKSD--FYSYE 203
           ++ L      ++   + + IE+   G  E+    +GD +    V  +   +    F  Y 
Sbjct: 625 ALELREAIHEAFVQDNDVFIEESRLGCKEIEVSFLGDGAGVFFVAGMHERRGSGGFIDYC 684

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI----GCRGISRSDFLFDPLSRKVFW 259
            KY  L+          +D+ +E+Q     A + I      +G  R DFL D      FW
Sbjct: 685 EKY-GLSGKPSAQIVFDVDLSQEMQEQLLGAAEKIYRLLQGKGSCRIDFLVD--DEGSFW 741

Query: 260 L-EINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           L EIN  PG T  S F       G+S  +++  +V D 
Sbjct: 742 LSEINPIPGTTESSPFLTAFVRKGWSCEQIIHQLVIDG 779


>gi|758377|gb|AAA87683.1| putative D-alanine:D-alanine ligase [Lactobacillus salivarius]
          Length = 201

 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 51/198 (25%), Positives = 100/198 (50%), Gaps = 24/198 (12%)

Query: 71  ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYV- 129
           +  LL  P+  SG+ +S +S DK  + ++++  G+     +LV       ++    PY  
Sbjct: 1   LFRLLNKPWIGSGVTSSGVSFDKDLTNKLLTLNGIRNTKYVLVT-----PENKADYPYAK 55

Query: 130 ----------IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELT 178
                     +KP + GSS+GI  ++ ++     L     +++  ++L+E+ +    E+ 
Sbjct: 56  VAEELGETLFVKPARQGSSVGIHKVRNEEEYNAALEDGFKYDY--KILVEEAIKNPREVE 113

Query: 179 CGVMGDASLDVTE---IAVPKSD-FYSYELKYSSLNST-HVLPAKIPLDIYKEVQRLAFL 233
           C V+G+  +  ++   I +P+SD FY Y  K+   +     +P K+P  + KE Q+++  
Sbjct: 114 CSVLGNRDIKASKLGAIRIPESDDFYDYNNKFVDASGVVFEMPIKLPEKLTKENQQMSLD 173

Query: 234 AHQAIGCRGISRSDFLFD 251
           A +A+  RG++R DFL D
Sbjct: 174 AFRALDNRGLARMDFLVD 191


>gi|254779285|ref|YP_003057390.1| D-alanyl-alanine synthetase A [Helicobacter pylori B38]
 gi|254001196|emb|CAX29162.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)
           (D-Ala-D-Ala ligase) [Helicobacter pylori B38]
          Length = 349

 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 76/321 (23%), Positives = 133/321 (41%), Gaps = 47/321 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDA----------------------GFKVSQIDV 38
             VL GG S E E+S+ S  A    L+D                           +QI  
Sbjct: 5   FCVLFGGASFEHEISVVSAIALKGVLKDRIKYFIFLDENHHFYLIEESNMHSKYFAQIKE 64

Query: 39  DRSVGLVLAH-------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
            +   L+L H             ++  L  N++HG  GEDG + ++LE   I +    I 
Sbjct: 65  KKLPPLILTHNGLLKNSFLGTKIIELPLVINLVHGGDGEDGKLASLLEFYRIAFIGPRIE 124

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVN-RFTMDSQHLI--SPPYVIKPLKGGSSLGII 142
           AS LS +K  +K      GV      L+N +   ++  LI  + P+++KP   GSSLG+ 
Sbjct: 125 ASVLSYNKYLTKLYAKDLGVKTLDYALLNEKNRANALDLIGFNFPFIVKPSNAGSSLGVS 184

Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE----LTCGVMGDASLDVTEIAVPKSD 198
           V+K+++ +   L   S++ +  ++LIE ++ G++      C +  D      E    K +
Sbjct: 185 VVKEEKELIYAL--DSAFEYSKEVLIEPFIQGVKEYNLAGCKIKKDFCFSYVE-EPNKQE 241

Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
           F  ++ KY   +      A +   + ++++      +  +    I R DF    +  +V+
Sbjct: 242 FLDFKQKYLDFSRNKAPKANLSNALEEQLKENFKKLYNDLFDGAIIRCDFFV--IENEVY 299

Query: 259 WLEINVQPGMTPVSIFPEMAA 279
             EIN  PG     +F +   
Sbjct: 300 LNEINPIPGSLANYLFDDFKT 320


>gi|315426386|dbj|BAJ48025.1| D-alanine-D-alanine ligase [Candidatus Caldiarchaeum subterraneum]
          Length = 640

 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 66/261 (25%), Positives = 118/261 (45%), Gaps = 29/261 (11%)

Query: 53  LAFNVLHGNFGED----GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV- 107
           + FN+    F  +      V A+LE+L + YT +G     L  DK + K + SS G+PV 
Sbjct: 356 MVFNLCDDGFKNNPEMEAHVPALLEMLGVRYTGAGPRCLTLCYDKAKVKAIASSMGIPVP 415

Query: 108 CPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGI----IVIKKDQSIPLDLLQSSSWNHG 163
             +IL N      +H +  P ++KP  G +S GI    +V  +D+ I         W + 
Sbjct: 416 HHTILFNGDNGSLKH-VKYPVIVKPNYGDNSWGITERNVVRNRDELISAIKEIRVKWGYS 474

Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDF----------YSYELKY---SSLN 210
             +L+E++V+G++LT  ++G+   DV  + +   D+           +Y  K+   S   
Sbjct: 475 GPILVEEFVEGMDLTVSILGNPPQDVV-LPILTEDYSKLPDGLPKILTYAAKWCPDSPYR 533

Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF--DPLSRKVFWLEINVQPGM 268
             + +P ++P  + +++          + CR  +R D+    D + R    LE+N  PG 
Sbjct: 534 FVNSIPVELPHRLREQLIWWCRKLFAMLECRDYARFDWRLGSDGVPR---LLEVNPNPGW 590

Query: 269 TPVSIFPEMAAYAGYSFRELL 289
                F +     G+S+R +L
Sbjct: 591 VWDGHFAKACLVLGWSYRRML 611


>gi|86152116|ref|ZP_01070328.1| D-alanine--D-alanine ligase [Campylobacter jejuni subsp. jejuni
           260.94]
 gi|85840901|gb|EAQ58151.1| D-alanine--D-alanine ligase [Campylobacter jejuni subsp. jejuni
           260.94]
          Length = 346

 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 59/233 (25%), Positives = 112/233 (48%), Gaps = 9/233 (3%)

Query: 49  LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
           L+ +   N++HG  GEDG + A+ E   I +    + AS LS +K  +K    S GV   
Sbjct: 85  LECECVINLIHGRDGEDGKIAALFEFYSIKFIGPRLEASVLSFNKELTKLYAKSVGVKTL 144

Query: 109 PSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168
              ++ R   +S+  +S P +IKP + GSS+GI ++K ++   L+  +   +   + L++
Sbjct: 145 DYTML-RKNQNSKEKLSFPCIIKPARLGSSIGISIVKDEKD--LEYAKDVGFEFDNDLVV 201

Query: 169 EQYVDGIELT--CGVMGDASLDVTEIAVP-KSDFYSYELKYSSLNS-THVLPAKIPLDIY 224
           E++ + I+     G M +     + I  P K +F  +E KY S +    ++ A +  ++ 
Sbjct: 202 EEFKNNIKEYNLAGCMINDEFVFSIIEEPKKKEFLDFEQKYLSFSGHNELIEADLSEELK 261

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
           ++++      +  +    + R DF    L  +V+  EIN  PG     +F + 
Sbjct: 262 EKLKDSFKKIYNPLFKGALIRCDFFI--LDDEVYLNEINPNPGSLANYLFKDF 312


>gi|15611742|ref|NP_223393.1| D-alanyl-alanine synthetase A [Helicobacter pylori J99]
 gi|6919861|sp|Q9ZLA5|DDL_HELPJ RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|4155237|gb|AAD06259.1| D-ALANINE--D-ALANINE LIGASE [Helicobacter pylori J99]
          Length = 347

 Score = 73.2 bits (178), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 75/321 (23%), Positives = 134/321 (41%), Gaps = 47/321 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDA----------------------GFKVSQIDV 38
             VL GG S E E+S+ S  A    L+D                           +QI  
Sbjct: 3   FCVLFGGASFEHEISIVSAIALKGVLKDRIKYFIFLDENHYFYLIEESNMHSKYFAQIKE 62

Query: 39  DRSVGLVLAH-------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
            +   L+L H             ++  L  N++HG  GEDG + ++LE   I +    + 
Sbjct: 63  KKLPPLILTHNGLLKNSFLGAKIIELPLVINLVHGGDGEDGKLASLLEFYRIAFIGPRVE 122

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVN-RFTMDSQHLI--SPPYVIKPLKGGSSLGII 142
           AS LS +K  +K      GV     +L+N +   ++  LI  + P+++KP   GSSLG+ 
Sbjct: 123 ASVLSYNKYLTKLYAKDLGVKALDYVLLNEKNRANALDLIGFNFPFIVKPSNAGSSLGVN 182

Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE----LTCGVMGDASLDVTEIAVPKSD 198
           V+K+++ +   L   S++ +  ++LIE ++ G++      C +         E    K +
Sbjct: 183 VVKEEKELIYAL--DSAFEYSKEVLIEPFIQGVKEYNLAGCKIKKGFCFSYVE-EPNKQE 239

Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
           F  ++ KY   + T    A +   + ++++      +  +    I R DF    +  +V+
Sbjct: 240 FLDFKQKYLDFSRTKAPKANLSNALEEQLKENFKKLYNDLFDGAIIRCDFFV--IENEVY 297

Query: 259 WLEINVQPGMTPVSIFPEMAA 279
             EIN  PG     +F +   
Sbjct: 298 LNEINPIPGSLANYLFDDFKT 318


>gi|315928272|gb|EFV07588.1| D-alanine--D-alanine ligase family protein [Campylobacter jejuni
           subsp. jejuni DFVF1099]
          Length = 257

 Score = 73.2 bits (178), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 57/226 (25%), Positives = 109/226 (48%), Gaps = 9/226 (3%)

Query: 56  NVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR 115
           N++HG  GEDG + A+ E   I +    + AS LS +K  +K    S GV      ++ R
Sbjct: 3   NLIHGRDGEDGKIAALFEFYSIKFIGPRLEASVLSFNKELTKLYAKSVGVKTLDYTIL-R 61

Query: 116 FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175
              +S+  +S P +IKP + GSS+GI ++K ++   L+  +   +   + L++E++ + I
Sbjct: 62  KNQNSKEKLSFPCIIKPARLGSSIGISIVKDEKD--LEYAKDVGFEFDNDLVVEEFKNNI 119

Query: 176 ELT--CGVMGDASLDVTEIAVP-KSDFYSYELKYSSLNS-THVLPAKIPLDIYKEVQRLA 231
           +     G M +     + I  P K +F  +E KY S +    ++ A +  ++ ++++   
Sbjct: 120 KEYNLAGCMINDEFVFSIIEEPKKKEFLDFEQKYLSFSGHNELIEADLSEELKEKLKDSF 179

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
              +  +    + R DF    L  +++  EIN  PG     +F + 
Sbjct: 180 KKIYNPLFKGALIRCDFFI--LDNEIYLNEINPNPGSLANYLFKDF 223


>gi|315427950|dbj|BAJ49541.1| D-alanine-D-alanine ligase [Candidatus Caldiarchaeum subterraneum]
          Length = 640

 Score = 73.2 bits (178), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 66/261 (25%), Positives = 118/261 (45%), Gaps = 29/261 (11%)

Query: 53  LAFNVLHGNFGED----GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV- 107
           + FN+    F  +      V A+LE+L + YT +G     L  DK + K + SS G+PV 
Sbjct: 356 MVFNLCDDGFKNNPEMEAHVPALLEMLGVRYTGAGPRCLTLCYDKAKVKAIASSMGIPVP 415

Query: 108 CPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGI----IVIKKDQSIPLDLLQSSSWNHG 163
             +IL N      +H +  P ++KP  G +S GI    +V  +D+ I         W + 
Sbjct: 416 HHTILFNGDNGSLKH-VKYPVIVKPNYGDNSWGITERNVVRNRDELISAIKEIRVKWGYS 474

Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDF----------YSYELKY---SSLN 210
             +L+E++V+G++LT  ++G+   DV  + +   D+           +Y  K+   S   
Sbjct: 475 GPILVEEFVEGMDLTVSILGNPPHDVV-LPILTEDYSKLPDGLPKILTYAAKWCPDSPYR 533

Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF--DPLSRKVFWLEINVQPGM 268
             + +P ++P  + +++          + CR  +R D+    D + R    LE+N  PG 
Sbjct: 534 FVNSIPVELPHRLREQLIWWCRKLFAMLECRDYARFDWRLGSDGVPR---LLEVNPNPGW 590

Query: 269 TPVSIFPEMAAYAGYSFRELL 289
                F +     G+S+R +L
Sbjct: 591 VWDGHFAKACLVLGWSYRRML 611


>gi|86150203|ref|ZP_01068430.1| D-alanine--D-alanine ligase [Campylobacter jejuni subsp. jejuni
           CF93-6]
 gi|218562426|ref|YP_002344205.1| D-alanyl-alanine synthetase A [Campylobacter jejuni subsp. jejuni
           NCTC 11168]
 gi|22095570|sp|Q9PPC2|DDL_CAMJE RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|85839319|gb|EAQ56581.1| D-alanine--D-alanine ligase [Campylobacter jejuni subsp. jejuni
           CF93-6]
 gi|112360132|emb|CAL34926.1| D-alanine--D-alanine ligase [Campylobacter jejuni subsp. jejuni
           NCTC 11168]
 gi|284926044|gb|ADC28396.1| D-alanyl-alanine synthetase A [Campylobacter jejuni subsp. jejuni
           IA3902]
          Length = 346

 Score = 73.2 bits (178), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 58/233 (24%), Positives = 112/233 (48%), Gaps = 9/233 (3%)

Query: 49  LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
           L+ +   N++HG  GEDG + A+ E   I +    + AS LS +K  +K    S GV   
Sbjct: 85  LECECVINLIHGRDGEDGKIAALFEFYSIKFIGPRLEASVLSFNKELTKLYAKSVGVKTL 144

Query: 109 PSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168
              ++ R   +S+  +S P +IKP + GSS+GI ++K ++   L+  +   +   + L++
Sbjct: 145 DYTIL-RKNQNSKEKLSFPCIIKPARLGSSIGISIVKDEKD--LEYAKDVGFEFDNDLVV 201

Query: 169 EQYVDGIELT--CGVMGDASLDVTEIAVP-KSDFYSYELKYSSLNS-THVLPAKIPLDIY 224
           E++ + I+     G M +     + I  P K +F  +E KY S +    ++ A +  ++ 
Sbjct: 202 EEFKNNIKEYNLAGCMINDEFVFSIIEEPKKKEFLDFEQKYLSFSGHNELIEADLSEELK 261

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
           ++++      +  +    + R DF    L  +++  EIN  PG     +F + 
Sbjct: 262 EKLKDSFKKIYNPLFKGALIRCDFFI--LDNEIYLNEINPNPGSLANYLFKDF 312


>gi|88597497|ref|ZP_01100731.1| D-alanine--D-alanine ligase [Campylobacter jejuni subsp. jejuni
           84-25]
 gi|88190089|gb|EAQ94064.1| D-alanine--D-alanine ligase [Campylobacter jejuni subsp. jejuni
           84-25]
          Length = 346

 Score = 73.2 bits (178), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 58/233 (24%), Positives = 112/233 (48%), Gaps = 9/233 (3%)

Query: 49  LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
           L+ +   N++HG  GEDG + A+ E   I +    + AS LS +K  +K    S GV   
Sbjct: 85  LECECVINLIHGRDGEDGKIAALFEFYSIKFIGPRLEASVLSFNKELTKLYAKSVGVKTL 144

Query: 109 PSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168
              ++ R   +S+  +S P +IKP + GSS+GI ++K ++   L+  +   +   + L++
Sbjct: 145 DYTIL-RKNQNSKEKLSFPCIIKPARLGSSIGISIVKDEKD--LEYAKDVGFEFDNDLVV 201

Query: 169 EQYVDGIELT--CGVMGDASLDVTEIAVP-KSDFYSYELKYSSLNS-THVLPAKIPLDIY 224
           E++ + I+     G M +     + I  P K +F  +E KY S +    ++ A +  ++ 
Sbjct: 202 EEFKNNIKEYNLAGCMINDEFVFSIIEEPKKKEFLDFEQKYLSFSGHNELIEADLSEELK 261

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
           ++++      +  +    + R DF    L  +++  EIN  PG     +F + 
Sbjct: 262 EKLKDSFKKIYNPLFKGALIRCDFFI--LDNEIYLNEINPNPGSLANYLFKDF 312


>gi|315586593|gb|ADU40974.1| D-alanine--D-alanine ligase [Helicobacter pylori 35A]
          Length = 356

 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 74/321 (23%), Positives = 133/321 (41%), Gaps = 47/321 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---------LAHLKP 51
             VL GG S E E+S+ S  A   AL+D       +D +    L+          A +K 
Sbjct: 12  FCVLFGGASFEHEISIVSAIALKEALKDRIKYFIFLDENHHFYLIEESNMHSKYFAQIKE 71

Query: 52  D--------------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
                                      L  N++HG  GEDG + ++LE   I +    I 
Sbjct: 72  KKLPPLILTRNGLLKNSFLGTKIIELPLVINLVHGGDGEDGKLASLLEFYRIAFIGPRIE 131

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVN-RFTMDSQHLI--SPPYVIKPLKGGSSLGII 142
           AS LS +K  +K      GV     +L+N +   ++ +LI  + P+++KP   GSSLG+ 
Sbjct: 132 ASVLSYNKYLTKLYAKDLGVKTLDYVLLNEKNRANALNLIGFNFPFIVKPSNAGSSLGVS 191

Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE----LTCGVMGDASLDVTEIAVPKSD 198
           V+K+++ +   L    ++ +  ++LIE ++ G++      C +  D      E    K +
Sbjct: 192 VVKEEKELIYAL--DGAFEYSKEVLIEPFIQGVKEYNLAGCKIKKDFCFSYIE-EPNKQE 248

Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
           F  ++ KY   +      A +   + ++++      +  +    + R DF    +  +V+
Sbjct: 249 FLDFKQKYLDFSRNKAPKANLSNALEEQLKENFKKLYNDLFDGALVRCDFFV--IENEVY 306

Query: 259 WLEINVQPGMTPVSIFPEMAA 279
             EIN  PG     +F +   
Sbjct: 307 LNEINPIPGSLANYLFDDFKT 327


>gi|116327785|ref|YP_797505.1| D-alanine--D-alanine ligase [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116331556|ref|YP_801274.1| D-alanine--D-alanine ligase [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
 gi|116120529|gb|ABJ78572.1| D-alanine--D-alanine ligase [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116125245|gb|ABJ76516.1| D-alanine--D-alanine ligase [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
          Length = 353

 Score = 72.8 bits (177), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 72/248 (29%), Positives = 112/248 (45%), Gaps = 24/248 (9%)

Query: 46  LAHLKPDLAFNVLHG--NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103
           L   K  + F+++ G  +   + L+ A  EL   P+T S + +  +S+DK  +K    S 
Sbjct: 68  LDFTKRPVLFHLMEGFRSRNRESLIPAAAELFGFPHTGSDVYSQNVSLDKNLTKIFAQSM 127

Query: 104 GVPVCPSILVNRFTMDSQ--HLISPPYVIKPLKGGSSLGI---IVIKKDQSIPLDLLQSS 158
           G+P+ P  L+ RF  D       S P  +KP   GSS GI    +I  ++ +   L  SS
Sbjct: 128 GIPIVPGFLI-RFETDFTVPKEFSFPGFLKPSGEGSSFGIGEESIIHDEKDLRFKL--SS 184

Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA----VPKSDFYSYELKYSSLNSTHV 214
                   L+E+Y+ GIE T  V+G   +     +    V + D    E+      S  V
Sbjct: 185 RTAEFFPYLLEEYLTGIEYTISVIGSNVVGYRVSSAGRLVLRDDLKVEEVYGEKTKSKSV 244

Query: 215 LPAKIPLDIYKEVQRLAFLAHQ------AIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268
           +P  +  D    ++   FL  Q      ++G  G +R D+  D L    F LEIN+ PG+
Sbjct: 245 MPETLVFDCPSGLE--LFLQEQSRLFCSSLGTSGPARLDWKLDSLGNPYF-LEINLTPGL 301

Query: 269 TPV-SIFP 275
           +P  S FP
Sbjct: 302 SPFYSTFP 309


>gi|317182047|dbj|BAJ59831.1| D-alanyl-alanine synthetase A [Helicobacter pylori F57]
          Length = 347

 Score = 72.8 bits (177), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 74/321 (23%), Positives = 133/321 (41%), Gaps = 47/321 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---------LAHLKP 51
             VL GG S E E+S+ S  A   AL+D       +D +    L+          A +K 
Sbjct: 3   FCVLFGGASFEHEISIVSAIALKEALKDRIKYFIFLDENHHFYLIEESNMHSKYFAQIKE 62

Query: 52  D--------------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
                                      L  N++HG  GEDG + ++LE   I +    I 
Sbjct: 63  KKLPPLILTRNGLLKNSFLGAKIIELPLVINLVHGGDGEDGKLASLLEFYRIAFIGPRIE 122

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVN-RFTMDSQHLI--SPPYVIKPLKGGSSLGII 142
           AS LS +K  +K      GV     +L+N +   ++ +LI  + P+++KP   GSSLG+ 
Sbjct: 123 ASVLSYNKYLTKLYAKDLGVKTLDYVLLNEKNRANALNLIGFNFPFIVKPSNAGSSLGVS 182

Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE----LTCGVMGDASLDVTEIAVPKSD 198
           V+K+++ +   L    ++ +  ++LIE ++ G++      C +  D      E    K +
Sbjct: 183 VVKEEKELIYAL--DGAFEYSKEVLIEPFIQGVKEYNLAGCKIKKDFCFSYIE-EPNKQE 239

Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
           F  ++ KY   +      A +   + ++++      +  +    + R DF    +  +V+
Sbjct: 240 FLDFKQKYLDFSRNKAPKANLSNALEEQLKENFKKLYNDLFDGALIRCDFFV--IENEVY 297

Query: 259 WLEINVQPGMTPVSIFPEMAA 279
             EIN  PG     +F +   
Sbjct: 298 LNEINPIPGSLANYLFDDFKT 318


>gi|148926964|ref|ZP_01810641.1| putative D-alanine--D-alanine ligase [Campylobacter jejuni subsp.
           jejuni CG8486]
 gi|145845048|gb|EDK22145.1| putative D-alanine--D-alanine ligase [Campylobacter jejuni subsp.
           jejuni CG8486]
          Length = 346

 Score = 72.8 bits (177), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 57/233 (24%), Positives = 112/233 (48%), Gaps = 9/233 (3%)

Query: 49  LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
           L+ +   N++HG  GEDG + A+ E   I +    + AS LS +K  +K    S GV   
Sbjct: 85  LECECVINLIHGRDGEDGKIAALFEFYSIKFIGPRLEASVLSFNKELTKLYAKSVGVKTL 144

Query: 109 PSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168
              ++ R   +S+  ++ P +IKP + GSS+GI ++K ++   L+  +   +   + L++
Sbjct: 145 DCTML-RKNQNSKEKLNFPCIIKPARLGSSIGISIVKDEKD--LEYAKDVGFEFDNDLVV 201

Query: 169 EQYVDGIELT--CGVMGDASLDVTEIAVP-KSDFYSYELKYSSLNS-THVLPAKIPLDIY 224
           E++ + I+     G M +     + I  P K +F  +E KY S +    ++ A +  ++ 
Sbjct: 202 EEFKNNIKEYNLAGCMINDEFVFSIIEEPKKKEFLDFEQKYLSFSGHNELIEADLSEELK 261

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
           ++++      +  +    + R DF    L  +++  EIN  PG     +F + 
Sbjct: 262 EKLKDSFKKIYNPLFKGALIRCDFFI--LDNEIYLNEINPNPGSLANYLFKDF 312


>gi|317014150|gb|ADU81586.1| D-alanyl-alanine synthetase A [Helicobacter pylori Gambia94/24]
          Length = 347

 Score = 72.4 bits (176), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 59/234 (25%), Positives = 109/234 (46%), Gaps = 12/234 (5%)

Query: 53  LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
           L  N++HG  GEDG + ++LE   I +    + AS LS +K  +K      GV      L
Sbjct: 90  LVINLVHGGDGEDGKLASLLEFYRIAFIGPRVEASVLSYNKYLTKLYAKDLGVKALDYAL 149

Query: 113 VN-RFTMDSQHLI--SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
           +N +   ++  LI  + P+++KP   GSSLG+ V+K+++ +   L   S++ +  ++LIE
Sbjct: 150 LNEKNRANALDLIGFNFPFIVKPSNAGSSLGVNVVKEEKELVYAL--DSAFEYSKEVLIE 207

Query: 170 QYVDGIE----LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
            ++ G++      C +  D      E    K +F  ++ KY   + T    A +   + +
Sbjct: 208 PFIQGVKEYNLAGCKIKTDFCFSYVE-EPNKQEFLDFKQKYLDFSRTKAPKANLSNALEE 266

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279
           +++      +  +    I R DF    +  +V+  EIN  PG     +F +   
Sbjct: 267 QLKENFKKLYNDLFDGAIIRCDFFV--IENEVYLNEINPIPGSLANYLFDDFKT 318


>gi|171848811|pdb|2PVP|A Chain A, Crystal Structure Of D-Alanine-D-Alanine Ligase From
           Helicobacter Pylori
 gi|171848812|pdb|2PVP|B Chain B, Crystal Structure Of D-Alanine-D-Alanine Ligase From
           Helicobacter Pylori
          Length = 367

 Score = 72.4 bits (176), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 74/321 (23%), Positives = 130/321 (40%), Gaps = 47/321 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDA----------------------GFKVSQIDV 38
             VL GG S E E+S+ S  A    L+D                           +QI  
Sbjct: 23  FCVLFGGASFEHEISIVSAIALKGVLKDRIKYFIFLDENHHFYLIEESNMHSKYFAQIKE 82

Query: 39  DRSVGLVLAH-------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
            +   L+L H             ++  L  N++HG  GEDG + ++LE   I +    I 
Sbjct: 83  KKLPPLILTHNGLLKNSFLGAKIIELPLVINLVHGGDGEDGKLASLLEFYRIAFIGPRIE 142

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILV---NRFTMDSQHLISPPYVIKPLKGGSSLGII 142
           AS LS +K  +K      G+     +L+   NR         + P+++KP   GSSLG+ 
Sbjct: 143 ASVLSYNKYLTKLYAKDLGIKTLDYVLLNEKNRANALDLMNFNFPFIVKPSNAGSSLGVN 202

Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE----LTCGVMGDASLDVTEIAVPKSD 198
           V+K+++ +   L   S++ +  ++LIE ++ G++      C +  D      E    K +
Sbjct: 203 VVKEEKELIYAL--DSAFEYSKEVLIEPFIQGVKEYNLAGCKIKKDFCFSYIE-EPNKQE 259

Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
           F  ++ KY   +      A +   + ++++      +  +    I R DF    +  +V+
Sbjct: 260 FLDFKQKYLDFSRNKAPKASLSNALEEQLKENFKKLYSDLFDGAIIRCDFFV--IENEVY 317

Query: 259 WLEINVQPGMTPVSIFPEMAA 279
             EIN  PG     +F +   
Sbjct: 318 LNEINPIPGSLANYLFDDFKT 338


>gi|257459534|ref|ZP_05624643.1| D-alanine--D-alanine ligase [Campylobacter gracilis RM3268]
 gi|257442959|gb|EEV18093.1| D-alanine--D-alanine ligase [Campylobacter gracilis RM3268]
          Length = 343

 Score = 72.4 bits (176), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 59/228 (25%), Positives = 104/228 (45%), Gaps = 12/228 (5%)

Query: 56  NVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR 115
           N++HG  GEDG + A+ E   IPY    I AS LS +K+ +K + +   V   P  +VNR
Sbjct: 93  NLIHGCDGEDGKMAALFEFFGIPYIGPRIEASVLSYNKILTKHLAAIANVKTLPYEIVNR 152

Query: 116 FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175
            ++ + +    P ++KP   GSS+GI + K +      L Q+   +  D  ++E Y + +
Sbjct: 153 TSLPNFNF---PIIVKPAHLGSSIGISIAKNESEFSYALDQAFELD--DSAIVEPYWENV 207

Query: 176 EL--TCGVMGDASLDVTEIAVPKSDFY-SYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
           +     G   D  +  + I  PK + Y +++ KY   + +  +    P  + +   + AF
Sbjct: 208 KEFNLAGAKIDGKIVFSNIEEPKKEGYLNFDRKYLDFSRSGAIEPARPGALLEGKMKDAF 267

Query: 233 LAHQAIGC--RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278
                 G     + R DF       +++  EIN  PG     +F + +
Sbjct: 268 TRLYNAGSFDGALIRCDFF--EKEGEIYLNEINPNPGSLANYLFDDFS 313


>gi|308062059|gb|ADO03947.1| D-alanyl-alanine synthetase A [Helicobacter pylori Cuz20]
          Length = 347

 Score = 72.4 bits (176), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 73/321 (22%), Positives = 133/321 (41%), Gaps = 47/321 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---------LAHLKP 51
             VL GG S E E+S+ S  A   AL+D       +D +    L+          A +K 
Sbjct: 3   FCVLFGGASFEHEISIVSAIALKEALKDRIKYFIFLDENHHFYLIEESNMHSKYFAQIKE 62

Query: 52  D--------------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
                                      L  N++HG  GEDG + ++LE   I +    I 
Sbjct: 63  KKLPPLILTRNGLLKNSFLGAKIIELPLVINLVHGGDGEDGKLASLLEFYRIAFIGPRIE 122

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVN-RFTMDSQHLI--SPPYVIKPLKGGSSLGII 142
           AS LS +K  +K      G+     +L+N +   ++ +LI  + P+++KP   GSSLG+ 
Sbjct: 123 ASVLSYNKYLTKLYAKDLGIKALDHVLLNEKNRANALNLIGFNFPFIVKPNNAGSSLGVS 182

Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE----LTCGVMGDASLDVTEIAVPKSD 198
           V+K+++ +   L    ++ +  ++LIE ++ G++      C +  D      E    K +
Sbjct: 183 VVKEEKELIYAL--DGAFEYSKEVLIEPFIQGVKEYNLAGCKIKKDFCFSYIE-EPNKQE 239

Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
           F  ++ KY   +      A +   + ++++      +  +    + R DF    +  +V+
Sbjct: 240 FLDFKQKYLDFSRNKAPKANLSNALEEQLKENFKKLYNDLFDGALIRCDFFV--IENEVY 297

Query: 259 WLEINVQPGMTPVSIFPEMAA 279
             EIN  PG     +F +   
Sbjct: 298 LNEINPIPGSLANYLFDDFKT 318


>gi|307637426|gb|ADN79876.1| D-alanine--D-alanine ligase [Helicobacter pylori 908]
 gi|325996016|gb|ADZ51421.1| D-alanine--D-alanine ligase [Helicobacter pylori 2018]
 gi|325997611|gb|ADZ49819.1| D-alanine--D-alanine ligase [Helicobacter pylori 2017]
          Length = 356

 Score = 72.4 bits (176), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 59/234 (25%), Positives = 109/234 (46%), Gaps = 12/234 (5%)

Query: 53  LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
           L  N++HG  GEDG + ++LE   I +    I AS LS +K  +K      G+      L
Sbjct: 99  LVINLVHGGDGEDGKLASLLEFYRIAFIGPRIEASVLSYNKYLTKLYAKDLGIKALDYAL 158

Query: 113 VN-RFTMDSQHLI--SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
           +N +   ++  LI  + P+++KP   GSSLG+ V+K+++ +   L   S++ +  ++LIE
Sbjct: 159 LNEKNRANALDLIGFNFPFIVKPSNAGSSLGVNVVKEEKELIYAL--DSAFEYSKEVLIE 216

Query: 170 QYVDGIE----LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
            ++ G++      C +  D      E    K +F  ++ KY   + T    A +   + +
Sbjct: 217 PFIQGVKEYNLAGCKIKKDFCFSYVE-EPNKQEFLDFKQKYLDFSRTKAPKANLSNALEE 275

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279
           +++      +  +    I R DF    +  +V+  EIN  PG     +F +   
Sbjct: 276 QLKENFKKLYNDLFDGAIIRCDFFV--IENEVYLNEINPIPGSLANYLFDDFKT 327


>gi|224437372|ref|ZP_03658344.1| D-alanyl-alanine synthetase A [Helicobacter cinaedi CCUG 18818]
 gi|313143837|ref|ZP_07806030.1| ligase [Helicobacter cinaedi CCUG 18818]
 gi|313128868|gb|EFR46485.1| ligase [Helicobacter cinaedi CCUG 18818]
          Length = 345

 Score = 72.4 bits (176), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 60/234 (25%), Positives = 113/234 (48%), Gaps = 14/234 (5%)

Query: 51  PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
           P+   +++HG  GEDG + A+L+   IP+    I +S +S +K  +K    S GV V   
Sbjct: 88  PNTLISLIHGADGEDGSMSALLDFYHIPFIGPRIESSVMSFNKALTKIYAQSRGVKVLDH 147

Query: 111 ILVNRFTMDSQHLISP-PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            ++ R   +S +   P P ++KP + GSS+G+ V+ K+    L+  +  ++ + D +++E
Sbjct: 148 EILTR---NSPNPTLPYPLILKPSRLGSSIGVSVVNKEDE--LEYAKDLAFEYDDSIVVE 202

Query: 170 QYVDGIE----LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST-HVLPAKIPLDIY 224
            +  G++      C +  +    + E    K +   +E KY   + T  VL A I  ++ 
Sbjct: 203 CFKSGVKEYNLAGCKIGDEFRFSIVE-EPSKKEMLDFENKYLDFSRTAQVLKADISQELE 261

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278
           K++Q+     ++      + R DF    +  +V+  EIN  PG     +F + A
Sbjct: 262 KQIQQNFAKLYENAFEGALIRCDFFV--IDNEVYLNEINPIPGSMANYLFEDFA 313


>gi|66816919|gb|AAY56773.1| D-alanine-D-alanine ligase [Helicobacter pylori]
          Length = 347

 Score = 72.4 bits (176), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 74/322 (22%), Positives = 132/322 (40%), Gaps = 49/322 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDA----------------------GFKVSQIDV 38
             VL GG S E E+S+ S  A    L+D                           +QI  
Sbjct: 3   FCVLFGGASFEHEISIVSAIALKGVLKDRIKYFIFLDENHHFYLIEESNMHSKYFAQIKE 62

Query: 39  DRSVGLVLAH-------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
            +   L+L H             ++  L  N++HG  GEDG + ++LE   I +    I 
Sbjct: 63  KKLPPLILTHNGLLKNSFLGAKIIELPLVINLVHGGDGEDGKLASLLEFYRIAFIGPRIE 122

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRFT----MDSQHLISPPYVIKPLKGGSSLGI 141
           AS LS +K  +K      G+     +L+N       +D  +  + P+++KP   GSSLG+
Sbjct: 123 ASVLSYNKYLTKLYAKDLGIKTLDYVLLNEKNRANALDLMNF-NFPFIVKPSNAGSSLGV 181

Query: 142 IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE----LTCGVMGDASLDVTEIAVPKS 197
            V+K+++ +   L   S++ +  ++LIE ++ G++      C +  D      E    K 
Sbjct: 182 NVVKEEKELIYAL--DSAFEYSKEVLIEPFIQGVKEYNLAGCKIKKDFCFSYIE-EPNKQ 238

Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
           +F  ++ KY   +      A +   + ++++      +  +    I R DF    +  +V
Sbjct: 239 EFLDFKQKYLDFSRNKAPKASLSNALEEQLKENFKKLYSDLFDGAIIRCDFFV--IENEV 296

Query: 258 FWLEINVQPGMTPVSIFPEMAA 279
           +  EIN  PG     +F +   
Sbjct: 297 YLNEINPIPGSLANYLFDDFKT 318


>gi|307747710|gb|ADN90980.1| D-alanine--D-alanine ligase [Campylobacter jejuni subsp. jejuni M1]
          Length = 346

 Score = 72.4 bits (176), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 58/233 (24%), Positives = 111/233 (47%), Gaps = 9/233 (3%)

Query: 49  LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
           L+ +   N++HG  GEDG + A+ E   I +    + AS LS +K  +K    S GV   
Sbjct: 85  LECECVINLIHGRDGEDGKIAALFEFYSIKFIGPRLEASVLSFNKELTKLYAKSVGVKTL 144

Query: 109 PSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168
              ++ R   +S+  +  P +IKP + GSS+GI ++K ++   L+  +   +   + L++
Sbjct: 145 DYTML-RKNQNSKEKLRFPCIIKPARLGSSIGISIVKDEKD--LEYAKDVGFEFDNDLVV 201

Query: 169 EQYVDGIELT--CGVMGDASLDVTEIAVP-KSDFYSYELKYSSLNS-THVLPAKIPLDIY 224
           E++ + I+     G M +     + I  P K +F  +E KY S +    ++ A +  ++ 
Sbjct: 202 EEFKNNIKEYNLAGCMINDEFVFSIIEEPKKKEFLDFEQKYLSFSGHNELIEADLSEELK 261

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
           ++++      +  +    + R DF    L  +V+  EIN  PG     +F + 
Sbjct: 262 EKLKDSFKKIYNPLFKGALIRCDFFI--LDNEVYLNEINPNPGSLANYLFKDF 312


>gi|307718300|ref|YP_003873832.1| D-alanine-D-alanine ligase related protein [Spirochaeta thermophila
           DSM 6192]
 gi|306532025|gb|ADN01559.1| D-alanine-D-alanine ligase related protein [Spirochaeta thermophila
           DSM 6192]
          Length = 646

 Score = 72.4 bits (176), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 66/264 (25%), Positives = 113/264 (42%), Gaps = 27/264 (10%)

Query: 50  KPDLAFNVLHGNFGEDGL----VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV 105
           K D  FN+    F  D      V A+LE+L IPYT +     A   DK   + V    GV
Sbjct: 372 KIDYVFNLCDEGFFNDPRKELHVPALLEMLGIPYTGATPQGLAFCYDKSLVRGVAKEMGV 431

Query: 106 PVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS------SS 159
           PV  +  ++  ++  +     P ++KP  G SS GI   +K     LD L +       +
Sbjct: 432 PVPRAFFIDPTSIVFEVPFGFPMIVKPNLGDSSFGI--TQKSVVWSLDELSACISEIRDT 489

Query: 160 WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYS----------YELKY--- 206
           + +   +L+E+++ G +LT G++G+   D   + + + D+ +          YE K+   
Sbjct: 490 FGYEKPVLVEEFLTGKDLTVGIIGNPPDDYMVLPIVEEDYSALPPELPRICGYEAKWLPD 549

Query: 207 -SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                +   +PA +P    K +        + + CR  +R D+  D      + LE+N  
Sbjct: 550 SPYWKALQSIPAGLPEATEKSIVEWCVRLFERLECRDYARFDWRCD-ADGNPYLLEVNPN 608

Query: 266 PGMTPVSIFPEMAAYAGYSFRELL 289
           PG        +MA  AG  + ++L
Sbjct: 609 PGWCWDGHLAKMARLAGMEYPQML 632


>gi|332673460|gb|AEE70277.1| D-alanine-D-alanine ligase [Helicobacter pylori 83]
          Length = 356

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 74/321 (23%), Positives = 133/321 (41%), Gaps = 47/321 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---------LAHLKP 51
             VL GG S E E+S+ S  A   AL+D       +D +    L+          A +K 
Sbjct: 12  FCVLFGGASFEHEISIVSTIALKEALKDRIKYFIFLDENHHFYLIEESNMHSKYFAQIKE 71

Query: 52  D--------------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
                                      L  N++HG  GEDG + ++LE   I +    I 
Sbjct: 72  KKLPPLILTRNGLLKNSFLGAKIIELPLVINLVHGGDGEDGKLASLLEFYRIAFIGPRIE 131

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVN-RFTMDSQHLI--SPPYVIKPLKGGSSLGII 142
           AS LS +K  +K      GV     +L+N +   ++ +LI  + P+++KP   GSSLG+ 
Sbjct: 132 ASVLSYNKYLTKLYAKDLGVKTLDYVLLNEKNRANALNLIGFNFPFIVKPSNAGSSLGVS 191

Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE----LTCGVMGDASLDVTEIAVPKSD 198
           V+K+++ +   L    ++ +  ++LIE ++ G++      C +  D      E    K +
Sbjct: 192 VVKEEKELIYAL--DGAFEYSKEVLIEPFIQGVKEYNLAGCKIKKDFCFSYIE-EPNKQE 248

Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
           F  ++ KY   +      A +   + ++++      +  +    + R DF    +  +V+
Sbjct: 249 FLDFKQKYLDFSRNKAPKANLSNALEEQLKENFKKLYNDLFDGALIRCDFFV--IENEVY 306

Query: 259 WLEINVQPGMTPVSIFPEMAA 279
             EIN  PG     +F +   
Sbjct: 307 LNEINPIPGSLANYLFDDFKT 327


>gi|6403498|gb|AAF07838.1|AC010871_14 unknown protein [Arabidopsis thaliana]
          Length = 515

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 81/317 (25%), Positives = 130/317 (41%), Gaps = 77/317 (24%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVS--QIDVD------------------- 39
           + ++ GG S+ER +SL+S ++    ++  G  VS   ID D                   
Sbjct: 80  VGLICGGPSAERGISLNSARSVLDHIQGDGINVSCYYIDPDLKAFAISSAQVYSNTPSDF 139

Query: 40  -----------RSVGLVLAHL--KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
                       S+  +  HL    D+ F V+HG FGEDG +Q +LE   IP+  +G   
Sbjct: 140 DFKLESLAQGFSSLSELAEHLVSAVDIVFPVIHGRFGEDGGIQELLESHNIPFVGTGSRE 199

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNR-----------FTMDSQHLISPPYVIKPLKG 135
              + DK  +   +   G    P+ LV             FT +   L     V+KP K 
Sbjct: 200 CFRAFDKYEASLELKELGFMTVPNYLVQGTGVDKSEIALWFTDNQLDLEMGKVVVKPAKA 259

Query: 136 GSSLGIIV-------IKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASL 187
           GSS+G+ V       IKK   + L+ +        D++++E ++ D  E T  V+   S 
Sbjct: 260 GSSIGVKVAFGVNDSIKKATELILEGID-------DRVVVEVFIEDAYEFTAIVLDVGSG 312

Query: 188 DV--------TEIAV-------PKSD-FYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRL 230
            V        TE+ +       PK +  + Y  KY  +   T+  P + P+ + K ++  
Sbjct: 313 SVCHPVVLMPTEVQLQFHGIGDPKENAIFDYRRKYLPTQQVTYHTPPRFPIHVIKSIREE 372

Query: 231 AFLAHQAIGCRGISRSD 247
           A L  Q +G R  +R D
Sbjct: 373 ASLIFQKLGLRDFARID 389


>gi|283954371|ref|ZP_06371892.1| LOW QUALITY PROTEIN: D-alanine--D-alanine ligase [Campylobacter
           jejuni subsp. jejuni 414]
 gi|283794170|gb|EFC32918.1| LOW QUALITY PROTEIN: D-alanine--D-alanine ligase [Campylobacter
           jejuni subsp. jejuni 414]
          Length = 346

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 61/233 (26%), Positives = 109/233 (46%), Gaps = 9/233 (3%)

Query: 49  LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
           L+ D   N++HG  GEDG + A+ E   I +    + ASALS +K  +K    S GV   
Sbjct: 85  LECDCVINLIHGRDGEDGKIAALFEFYSIKFIGPRLEASALSFNKELTKLYAKSIGVKTL 144

Query: 109 PSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168
              ++ +     + LI P  +IKP + GSS+GI ++K ++   L+  +   +   + LL+
Sbjct: 145 DYTMLRKGQNFKEKLIFPC-IIKPARLGSSIGISIVKDEKD--LEYAKDVGFEFDNDLLV 201

Query: 169 EQYVDGIELT--CGVMGDASLDVTEIAVP-KSDFYSYELKYSSLNS-THVLPAKIPLDIY 224
           E++   I+     G M +     + I  P K +F  +E KY S +    ++ A +  ++ 
Sbjct: 202 EEFKSDIKEYNLAGCMINDEFVFSIIEEPKKKEFLDFEQKYLSFSGHNELIEADLGEELK 261

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
            +++      +  +    + R DF    L  +V+  EIN  PG     +F + 
Sbjct: 262 TKLKDNFKKIYNPLFKGALIRCDFF--VLDNEVYLNEINPNPGSLANYLFKDF 312


>gi|239617317|ref|YP_002940639.1| D-alanine--D-alanine ligase [Kosmotoga olearia TBF 19.5.1]
 gi|239506148|gb|ACR79635.1| D-alanine--D-alanine ligase [Kosmotoga olearia TBF 19.5.1]
          Length = 321

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 65/262 (24%), Positives = 127/262 (48%), Gaps = 22/262 (8%)

Query: 52  DLAFNVLHG--NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109
           D AFN+  G     +     AIL+ L +P+T S  +  A+ +DK  +K ++   G+P   
Sbjct: 49  DFAFNLSTGGGKLSKQVHAPAILDRLGVPFTGSSAIVHAICIDKSITKLILEKSGIPTPR 108

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGI---IVIKKDQSIPLDL-LQSSSWNHGDQ 165
            + ++      +    P +V KP   GS+LGI    V+K  + +   + +  + +N    
Sbjct: 109 FVKIDDPNNIPEIDFYPAFV-KPSCEGSALGISRDSVVKNQKELKKQVEMIMNKFNQ--P 165

Query: 166 LLIEQYVDGIELTCGVMGDAS---------LDVTEIAVPKSDFYSYELKYS-SLNSTHVL 215
            ++E+++DG E T G++G+ +         +D + +      FYS+ +K+     +T++ 
Sbjct: 166 AIVEEFIDGREFTVGIIGNGNDLKVLPILEIDFSNLPEGLEHFYSHRVKHHYGEKTTYIC 225

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV-SIF 274
           PA++     K+++  A  A +AIG    +R D        + + +E+N  P + PV S  
Sbjct: 226 PARLEESQRKKLENYAKRAFKAIGLFDFARIDVRMR--VNEFYIIEVNSLPLLVPVYSDL 283

Query: 275 PEMAAYAGYSFRELLLWMVEDA 296
            +M A  G+ + +L+  ++E A
Sbjct: 284 TKMLAPIGWKYEDLVNAILEAA 305


>gi|308182897|ref|YP_003927024.1| D-alanyl-alanine synthetase A [Helicobacter pylori PeCan4]
 gi|308065082|gb|ADO06974.1| D-alanyl-alanine synthetase A [Helicobacter pylori PeCan4]
          Length = 347

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 74/321 (23%), Positives = 131/321 (40%), Gaps = 47/321 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDA----------------------GFKVSQIDV 38
             VL GG S E E+S+ S       L+D                           +QI  
Sbjct: 3   FCVLFGGASFEHEISIVSAIVLKEVLKDRIKYFIFLDENHHFYLIEESNMHSKYFAQIKE 62

Query: 39  DRSVGLVLAH-------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
            +   L+L H             ++  L  N++HG  GEDG + ++LE   I +    I 
Sbjct: 63  KKLSPLILTHNGLLKNSFLGAKIIELPLVINLVHGGDGEDGKLASLLEFYRIAFIGPRIE 122

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVN-RFTMDSQHLI--SPPYVIKPLKGGSSLGII 142
           AS LS +K  +K      G+     +L+N R   ++  LI  + P++IKP   GSSLG+ 
Sbjct: 123 ASVLSYNKYLTKLYAKDLGIKALDYVLLNERNRANALDLIGFNFPFIIKPNNAGSSLGVS 182

Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE----LTCGVMGDASLDVTEIAVPKSD 198
           V+K+ + +   L    ++ +  ++LIE ++ G++      C +  D      E    K +
Sbjct: 183 VVKEKKELIYAL--DGAFEYSKEVLIEPFIQGVKEYNLAGCKIKKDFCFSYVE-EPNKQE 239

Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
           F  ++ KY   +      A +   + ++++      +  +    + R DF    +  +V+
Sbjct: 240 FLDFKQKYLDFSRNKAPKANLSNTLEEQLKENFKKLYNDLFDGALIRCDFFV--IEDEVY 297

Query: 259 WLEINVQPGMTPVSIFPEMAA 279
             EIN  PG     +F +   
Sbjct: 298 LNEINPIPGSLANYLFDDFKT 318


>gi|237751270|ref|ZP_04581750.1| D-alanyl-alanine synthetase A [Helicobacter bilis ATCC 43879]
 gi|229372636|gb|EEO23027.1| D-alanyl-alanine synthetase A [Helicobacter bilis ATCC 43879]
          Length = 349

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 62/236 (26%), Positives = 104/236 (44%), Gaps = 11/236 (4%)

Query: 49  LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
           L   L  N++HG  GEDG++  + +  +I Y    + AS LS +K  +K     CGV   
Sbjct: 89  LNTGLLLNLIHGGDGEDGVLSGLFDFYKIAYIGPRLEASILSYNKRLTKLYAKECGVETL 148

Query: 109 PSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168
           P  ++ R     +     PY+IKP   GSS+G+ V++    +   L    ++   ++++I
Sbjct: 149 PYYVLKR-NETCEIPFELPYIIKPTCLGSSIGVCVVEDQAKLSYGL--DCAFEFSNEVII 205

Query: 169 EQYVDGIE----LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST-HVLPAKIPLDI 223
           E +  GI+        V G+  L + E  V K D   +E KY   + T  +  A+I   +
Sbjct: 206 EPFKKGIKEYNLAGTKVNGEFILSLIEEPV-KKDLLGFEDKYLDFSRTEEIKNAEITESL 264

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279
            K +       +       + R DF     S K++  EIN  PG     +F +  +
Sbjct: 265 TKNLHEAFKKIYNTTFEGALIRCDFFVS--SDKIYLNEINPIPGSMANYLFSDFES 318


>gi|297379935|gb|ADI34822.1| D-alanine--D-alanine ligase [Helicobacter pylori v225d]
          Length = 296

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 58/234 (24%), Positives = 109/234 (46%), Gaps = 12/234 (5%)

Query: 53  LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
           L  N++HG  GEDG + ++LE   I +    I AS LS +K  +K      GV     +L
Sbjct: 39  LVINLVHGGDGEDGKLASLLEFYRIAFIGPRIEASVLSYNKYLTKLYAKDLGVKALDHVL 98

Query: 113 VN-RFTMDSQHLI--SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
           +N +   ++ +LI  + P++IKP   GSSLG+ V+K+++ +   L    ++ +  ++LIE
Sbjct: 99  LNEKNRANALNLIGFNFPFIIKPSNAGSSLGVSVVKEEKELIYAL--DGAFEYSKEVLIE 156

Query: 170 QYVDGIE----LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
            ++ G++      C +  D      E    K +F  ++ KY   +      A +   + +
Sbjct: 157 PFIQGVKEYNLAGCKIKKDFCFSYVE-EPNKQEFLDFKQKYLDFSRNKAPKANLSNALEE 215

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279
           +++      +  +    + R DF    +  +V+  EIN  PG     +F +   
Sbjct: 216 QLKENFKKLYNDLFDGALIRCDFFV--IENEVYLNEINPIPGSLANYLFDDFKT 267


>gi|322699308|gb|EFY91071.1| hypothetical protein MAC_02957 [Metarhizium acridum CQMa 102]
          Length = 357

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 84/304 (27%), Positives = 132/304 (43%), Gaps = 27/304 (8%)

Query: 20  KACASALEDAGFKVSQIDVDRSVGLVLA---HLKPDLAFNVLHGNFG--EDGLVQAILEL 74
           KA A+ LE  G  V+ +    S+   LA   H   DLAFN+  G  G   +  V A+LE 
Sbjct: 41  KAVAAGLESLGHDVTIVPGVSSLVEHLAAGKHKNWDLAFNMAQGFHGPARESHVPALLEA 100

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP--PYVIKP 132
             IPYT S     AL  +K  +K +++  GVP  P +++    +     + P  P  +KP
Sbjct: 101 YLIPYTFSDAATMALCQNKANTKIILNHHGVPSAPFMVIPSEHLSIHATLPPEYPLFVKP 160

Query: 133 LKGGSSLGIIVIKKDQS---IPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS--- 186
              GSS GI    K  +   + L + +  +   G  +L+E ++ G E T  ++G  S   
Sbjct: 161 ATEGSSKGIDRFNKVNNYAELELAVQKLKAKFPGQDILVESFLSGREFTVSILGTGSHSR 220

Query: 187 -LDVTE---IAVPKSDFYSYE---LKYSSLNSTHVLPAKIPLDI----YKEVQRLAFLAH 235
            + + E      P++ +++ E      S L+   +L      D+     K   ++A    
Sbjct: 221 VVGIREHIWQTFPENGYHATEEFASWKSKLSEGCLLRYNDAHDMDDPQVKAACQVALDTW 280

Query: 236 QAIGCRGISRSDFLFDPLSRKVF--WLEINVQPGMTP-VSIFPEMAAYAGYSFRELLLWM 292
            A+GCR   R D  F+          LE+N   G+ P  S  P  A   G SF  LL  +
Sbjct: 281 TALGCRDAGRVDIRFNSDDADAIPNVLEVNPIAGLLPGHSPLPASAEENGLSFEALLTAI 340

Query: 293 VEDA 296
           ++ A
Sbjct: 341 IKSA 344


>gi|189501741|ref|YP_001957458.1| hypothetical protein Aasi_0291 [Candidatus Amoebophilus asiaticus
           5a2]
 gi|189497182|gb|ACE05729.1| hypothetical protein Aasi_0291 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 475

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 42/108 (38%), Positives = 60/108 (55%), Gaps = 12/108 (11%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D AF  LHG  GEDG +Q +LE  +IPY+ SGIL +A+ +DK+  K+ +   G  V P  
Sbjct: 114 DFAFLSLHGPCGEDGSIQGLLEWYKIPYSGSGILGTAVGIDKIVQKKWMQQAGFLVTPYS 173

Query: 112 LVNRFTMDSQ-----------HLISPPYVIKPLKGGSSLGI-IVIKKD 147
           +++R T               H +  P VIK  + GSS+G+ IV +KD
Sbjct: 174 IIDRNTWQKTTNKDALFEELIHTLGLPLVIKSPRQGSSIGVNIVYEKD 221


>gi|313682067|ref|YP_004059805.1| d-alanine/d-alanine ligase [Sulfuricurvum kujiense DSM 16994]
 gi|313154927|gb|ADR33605.1| D-alanine/D-alanine ligase [Sulfuricurvum kujiense DSM 16994]
          Length = 345

 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 55/228 (24%), Positives = 114/228 (50%), Gaps = 11/228 (4%)

Query: 56  NVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR 115
           N++HG  GEDG + ++L+   IP+      AS LS DK  +K + +S G+   P  ++++
Sbjct: 92  NLIHGGDGEDGSIASLLDFFHIPFIGPRKEASMLSFDKHYTKWLANSLGIKTLPYEILHK 151

Query: 116 FTMDSQHLISP-PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
              D + + +  P++IKP + GSS+G+ ++++++   LD     ++     +LIE ++ G
Sbjct: 152 --EDKRAVKTAYPFIIKPARLGSSIGVSIVREERE--LDYALDVAFEFDSVVLIEPFIAG 207

Query: 175 IELT--CGVMGDASLDVTEIAVP-KSDFYSYELKYSSLN-STHVLPAKIPLDIYKEVQRL 230
           ++     G      ++ + +  P K++F  +E KY   + S +V  A +   + ++++  
Sbjct: 208 VKEYNLAGFSARGEMNYSIVEEPQKAEFLDFEKKYLDFSRSGNVAEASVSDTLVQQLRDA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278
               +  +    + R DF    +  +V+  EIN  PG     +F +  
Sbjct: 268 FKTIYLPLFEGALIRCDFF--EIEGEVYLNEINPIPGSMANYLFDDFG 313


>gi|32265630|ref|NP_859662.1| D-alanyl-alanine synthetase A [Helicobacter hepaticus ATCC 51449]
 gi|39930848|sp|Q7VJW2|DDL_HELHP RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|32261678|gb|AAP76728.1| D-alanine-D-alanine ligase [Helicobacter hepaticus ATCC 51449]
          Length = 350

 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 60/237 (25%), Positives = 111/237 (46%), Gaps = 13/237 (5%)

Query: 51  PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
           P    N++HG  GEDG V A+L+   +P+    I +S +S +K+ +K   +  GV V   
Sbjct: 88  PHTLINLIHGADGEDGSVSALLDFYHLPFIGPRIESSVMSFNKVFTKIFAAQRGVKVLDY 147

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            ++ R     +H I+ P ++KP + GSS+G+ VI +++   LD  +  ++ + D ++ E 
Sbjct: 148 EILTRANPHLKH-IAYPIILKPARLGSSIGVSVINEEKE--LDYGRDLAFEYDDTIIAES 204

Query: 171 YVDGIE---LTCGVMGDASLDVTEIAV----PKSDFYSYELKYSSLNST-HVLPAKIPLD 222
           +  G++   L    + + S D    ++     K +   +E KY   + T  VL A I   
Sbjct: 205 FKSGVKEYNLAGCRVKNGSQDEYRFSIIEEPSKKELLDFERKYLDFSRTAQVLQADISSA 264

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279
           +  ++Q      ++      + R DF    +  +V+  EIN  PG     +F +   
Sbjct: 265 LVAKLQENFMKLYENAFEGALIRCDFFV--IDDEVYLNEINPIPGSMANYLFEDFVG 319


>gi|303273608|ref|XP_003056164.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226462248|gb|EEH59540.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 918

 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 79/330 (23%), Positives = 137/330 (41%), Gaps = 82/330 (24%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD--------------------- 39
           +AVL GG S+ER VSL+S ++    L  +GF V    +D                     
Sbjct: 32  VAVLCGGPSAERGVSLNSARSILDNLHGSGFTVDCYYIDQGLRAFPINARQIYCNTPSDF 91

Query: 40  -------RSVGL-----VLAHLKPD--LAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
                  R  G+     + + L+    +AF  LHG FGEDG++Q  LE   +P+  +  +
Sbjct: 92  DFKLRGKRREGIRDPVALASRLRAQGAIAFPALHGAFGEDGVLQNALEEAGVPFVGTDAM 151

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL----------ISPPY---VIKP 132
            +  + DK    + +++ G P     L+   +    H           + P +   V+KP
Sbjct: 152 HACRAFDKFTCSRTLAAEGFPTLSMTLLEPSSNMDYHATLLRWFATCNLDPEFDYVVVKP 211

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG--DQLLIEQYV-DGIELTCGVMGDASLDV 189
            +GGSS+G+ + +    +    L S  +  G   ++++E+Y   G+E T  V+G  +  V
Sbjct: 212 ARGGSSIGVSIARG--VVQASDLASKLFTSGTDSRVVVERYAGSGVEFTITVLGTTNEPV 269

Query: 190 ----TEIAV--------------------PKSDFYSYELKYSSLNSTHVL---PAKIPLD 222
               TEI +                     + +F+ +  KY  L + HV+   PA+    
Sbjct: 270 PLIPTEIEILADVEKGLKTSRKVGPAARLEQFNFFDFRRKY--LPTMHVVYHTPARFGTG 327

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
              +++R A    + +G R  +R D  F P
Sbjct: 328 AIDKIRRNAASIFKLLGLRDYARLDGFFMP 357



 Score = 43.1 bits (100), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 74/306 (24%), Positives = 112/306 (36%), Gaps = 94/306 (30%)

Query: 55  FNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSK---QVVSSCGVPVCPSI 111
           FN +HG  GEDG +QA+       YT SG  +S L  DK  +    + +S  G+     +
Sbjct: 593 FNAVHGGCGEDGTLQALFTEARASYTGSGPASSRLCFDKAATGGELKPLSYFGI-----L 647

Query: 112 LVNRFTMDSQHL--------------------ISP-PY--VIKPLKGGSSLGIIVIKKDQ 148
             NR  + S+ L                    + P P+   IKP   G S G+  +K   
Sbjct: 648 SYNRLLVSSRVLEVFLGQTSIVATIWDAFVATVGPAPFGLCIKPNSDGCSTGVARLKGSD 707

Query: 149 SI---------------PLDLLQSSSWNH--------GDQLLIEQYV-----------DG 174
            +               P DL  +S   H            L+E ++            G
Sbjct: 708 DLLAYATAIFNHQSHLHPGDLPMASGIAHIIELPEEIPSNFLVEPFIPTATVCITRCRSG 767

Query: 175 I----------------ELTCGVMG----DASLDVTEIAVPKSDFYSYELKYSSLNSTHV 214
           I                E+T GV+G     A+L  +   V   D  S E K+ +    ++
Sbjct: 768 IEELYFEDVAFSTTRWIEVTVGVVGTKGHTAALHPSLTIVGHGDVLSLEEKFQAGTGVNI 827

Query: 215 LPAKIPLDIYK-EV-----QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268
            P  +P  I   EV      R+AF A+ A+   G +R D      +  V  +E N  PG+
Sbjct: 828 TP--LPATIASAEVLSAARTRIAFAAN-ALDIEGFARIDLFLHVDTGDVMIVEANTVPGL 884

Query: 269 TPVSIF 274
           TP ++ 
Sbjct: 885 TPSTVL 890


>gi|308272544|emb|CBX29148.1| hypothetical protein N47_J01290 [uncultured Desulfobacterium sp.]
          Length = 335

 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 85/304 (27%), Positives = 139/304 (45%), Gaps = 29/304 (9%)

Query: 7   GISSEREVSLSSGK---ACASALEDAGFKVSQIDVDRSVGLVLAHLKP-DLAFNVLHGNF 62
           G S E      S +   A   AL D G+K  +I   +++   L+  K  D+ FN+  G F
Sbjct: 17  GFSEEDAAEFDSEETIDAIEKALSDLGYKTERIGHIKNLVKYLSQGKRWDIVFNIAEGCF 76

Query: 63  G--EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT-MD 119
           G   +  + AIL+  +I YT S  L  +L+++K  +K +V + G+      LV + + +D
Sbjct: 77  GAGREAQIPAILDAYKIAYTFSDPLVLSLTLNKAVTKLIVQNLGIATPAFALVEKLSDID 136

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQL----LIEQYVDGI 175
           S  L  P +V KP+  G+  GI    K  +   D L +  ++  D+     L+E ++ G 
Sbjct: 137 SISLPFPLFV-KPVAEGTGKGISAASK--TTNKDDLYNVCFDLLDRFKQPALVETHLPGR 193

Query: 176 ELTCGVMGDAS----LDVTEIAV---PKSDFYSY--ELKYSSLNSTHVLPAKIPLDIYKE 226
           E T G++G         V E+ +    + D YSY  + KY  L S  +   K+  D  K 
Sbjct: 194 EFTVGIIGTGEKARVAGVIEVLLNEHAEGDSYSYINKKKYEELVSYRLADDKMARDTAK- 252

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV-SIFPEMAAYAGYSF 285
              +A  A   + C    R D   D      F +E+N   G+ P+ S  P +   +G S+
Sbjct: 253 ---VALDAWVGLKCLDAGRIDIRSDVNGYPNF-IEVNPLAGLHPIHSDLPILCRLSGISY 308

Query: 286 RELL 289
           +EL+
Sbjct: 309 KELI 312


>gi|152990841|ref|YP_001356563.1| D-alanyl-alanine synthetase A [Nitratiruptor sp. SB155-2]
 gi|189083044|sp|A6Q3Z7|DDL_NITSB RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|151422702|dbj|BAF70206.1| D-alanine-D-alanine ligase [Nitratiruptor sp. SB155-2]
          Length = 342

 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 66/233 (28%), Positives = 106/233 (45%), Gaps = 12/233 (5%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+  N++HG  GEDG + ++LE  EI Y    I  S +S  K+ +K     CG+ V P  
Sbjct: 87  DVVINLVHGADGEDGKLASLLEFFEIDYIGPRIEGSVISYSKLLTKLYAKECGIEVLPYQ 146

Query: 112 LVNRFTMDSQHL-ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           L+ +   D + +    P +IKP   GSS+G+ V+    S  L+     ++   D++LIE 
Sbjct: 147 LLRK--QDKKIIDFEYPVIIKPNHLGSSIGVSVVY--DSSELEYALDVAFEFDDEVLIEP 202

Query: 171 YVDGIELT--CGVMGDASLDVTEI-AVPKSDFYSYELKYSSL-NSTHVLPAKIPLDIYKE 226
           +++GIE     G  G  +   ++I AV K     +E KY     S  V  A +   +   
Sbjct: 203 FIEGIEEYNLAGAKG-QTFHFSKIEAVKKEKLLDFEKKYLDFGRSGEVKDASLNETLRLH 261

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279
           ++      +  +    I R DF       K++  EIN  PG     +F +  A
Sbjct: 262 IRNAFEKIYDPLFSGAIIRIDFFVR--DGKLYLNEINPVPGSLANYLFGDFRA 312


>gi|261838029|gb|ACX97795.1| D-alanine:D-alanine ligase A [Helicobacter pylori 51]
          Length = 347

 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 57/234 (24%), Positives = 109/234 (46%), Gaps = 12/234 (5%)

Query: 53  LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
           L  N++HG  GEDG + ++LE   I +    I AS LS +K  +K      GV     +L
Sbjct: 90  LVINLVHGGDGEDGKLASLLEFYRIAFIGPRIEASVLSYNKYLTKLYAKDLGVKTLDYVL 149

Query: 113 VN-RFTMDSQHLI--SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
           +N +   ++ +LI  + P+++KP   GSSLG+ V+K+++ +   L    ++ +  ++LIE
Sbjct: 150 LNEKNRTNALNLIGFNFPFIVKPSNAGSSLGVSVVKEEKELIYAL--DGAFEYSKEVLIE 207

Query: 170 QYVDGIE----LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
            ++ G++      C +  D      E    K +F  ++ KY   +      A +   + +
Sbjct: 208 PFIQGVKEYNLAGCKIKKDFCFSYIE-EPNKQEFLDFKQKYLDFSRNKAPKANLSNALEE 266

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279
           +++      +  +    + R DF    +  +V+  EIN  PG     +F +   
Sbjct: 267 QLKENFKKLYNDLFDGALIRCDFFV--IKNEVYLNEINPIPGSLANYLFDDFKT 318


>gi|217033771|ref|ZP_03439197.1| hypothetical protein HP9810_7g52 [Helicobacter pylori 98-10]
 gi|216943820|gb|EEC23260.1| hypothetical protein HP9810_7g52 [Helicobacter pylori 98-10]
          Length = 347

 Score = 70.5 bits (171), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 57/234 (24%), Positives = 109/234 (46%), Gaps = 12/234 (5%)

Query: 53  LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
           L  N++HG  GEDG + ++LE   I +    I AS LS +K  +K      GV     +L
Sbjct: 90  LVINLVHGGDGEDGKLASLLEFYRIAFIGPRIEASVLSYNKYLTKLYAKDLGVKTLDYVL 149

Query: 113 VN-RFTMDSQHLI--SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
           +N +   ++ +LI  + P+++KP   GSSLG+ V+K+++ +   L    ++ +  ++LIE
Sbjct: 150 LNEKNRANALNLIGFNFPFIVKPSNAGSSLGVSVVKEEKELIYAL--DGAFEYSKEVLIE 207

Query: 170 QYVDGIE----LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
            ++ G++      C +  D      E    K +F  ++ KY   +      A +   + +
Sbjct: 208 PFIQGVKEYNLAGCKIKKDFCFSYIE-EPNKQEFLDFKQKYLDFSRNKAPKANLSNALEE 266

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279
           +++      +  +    + R DF    +  +V+  EIN  PG     +F +   
Sbjct: 267 QLKENFKKLYNDLFDGALIRCDFFV--IENEVYLNEINPIPGSLANYLFDDFKT 318


>gi|153952610|ref|YP_001398281.1| D-alanyl-alanine synthetase A [Campylobacter jejuni subsp. doylei
           269.97]
 gi|189083035|sp|A7H451|DDL_CAMJD RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|152940056|gb|ABS44797.1| D-alanine--D-alanine ligase [Campylobacter jejuni subsp. doylei
           269.97]
          Length = 346

 Score = 70.5 bits (171), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 59/236 (25%), Positives = 114/236 (48%), Gaps = 11/236 (4%)

Query: 49  LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
           L+ +   N++HG  GEDG + A+ E   I +    + AS LS +K  +K    S GV   
Sbjct: 85  LECECVINLIHGGDGEDGKIAALFEFYSIKFIGPRLEASVLSFNKELTKLYAKSVGVKTL 144

Query: 109 PSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168
              ++ R   +S+  +  P +IKP + GSS+GI ++K ++   L+  +   +   + L++
Sbjct: 145 DYTML-RKGQNSKEKLRFPCIIKPARLGSSIGISIVKDEKD--LEYAKDVGFEFDNDLVV 201

Query: 169 EQYVDGIE---LTCGVMGDASLDVTEIAVP-KSDFYSYELKYSSLNS-THVLPAKIPLDI 223
           E++ + I+   L   V+ D  +  + I  P K +F  +E KY S +    ++ A +  ++
Sbjct: 202 EEFKNNIKEYNLAGCVINDKFV-FSIIEEPKKKEFLDFEQKYLSFSGHNELIEANLSEEL 260

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279
            ++++      +  +    + R DF    L  +V+  EIN  PG     +F + + 
Sbjct: 261 KEKLKDSFKKIYNPLFKGALIRCDFFI--LDNEVYLNEINPNPGSLANYLFKDFST 314


>gi|78777406|ref|YP_393721.1| D-alanyl-alanine synthetase A [Sulfurimonas denitrificans DSM 1251]
 gi|123550178|sp|Q30R95|DDL_SULDN RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|78497946|gb|ABB44486.1| D-alanine--D-alanine ligase [Sulfurimonas denitrificans DSM 1251]
          Length = 345

 Score = 70.1 bits (170), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 61/228 (26%), Positives = 112/228 (49%), Gaps = 9/228 (3%)

Query: 56  NVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR 115
           N++HG  GEDG + AIL+   I Y    + AS  S DK  +K +  + GV    S  ++ 
Sbjct: 92  NLIHGGDGEDGTIAAILDFFSIKYIGPRVDASVFSYDKRYTKWLCHARGVKCVESQELSS 151

Query: 116 FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175
            +  S   I+ P ++KP + GSS+G+ ++ KD+S  LD    S++   + +++E +++G+
Sbjct: 152 -SEHSNIKIAYPIIVKPSRLGSSIGVSIV-KDES-KLDYALDSAFEFDNTVIVEPFLEGV 208

Query: 176 ELT--CGVMGDASLDVTEIAVP-KSDFYSYELKYSSLN-STHVLPAKIPLDIYKEVQRLA 231
           +     G         + I  P K +F  +E KY   + S +V  A+I  ++  +++   
Sbjct: 209 KEYNLAGFSAGKKFYFSIIEEPQKEEFLDFEKKYMDFSRSGNVDSAEISKELESKLRASF 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279
              ++ +    + R DF    ++ +VF  EIN  PG     +F +   
Sbjct: 269 EKVYKNLFEGALIRCDFFV--VNGEVFLNEINPIPGSMANYLFDDFGG 314


>gi|154148214|ref|YP_001406160.1| D-alanyl-alanine synthetase A [Campylobacter hominis ATCC BAA-381]
 gi|153804223|gb|ABS51230.1| D-alanine--D-alanine ligase (D-alanylalanine
           synthetase)(D-Ala-D-Ala ligase) [Campylobacter hominis
           ATCC BAA-381]
          Length = 342

 Score = 69.7 bits (169), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 63/239 (26%), Positives = 108/239 (45%), Gaps = 18/239 (7%)

Query: 47  AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP 106
             ++ D+  NV+HG  GEDG + ++LE   IP+    + AS +S DK  +K +  + G+ 
Sbjct: 83  TRVEADVFVNVIHGCDGEDGKLASLLEFFNIPFIGPRLEASVISYDKELTKNLAKAAGIK 142

Query: 107 VCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQL 166
                ++   T+ S   I  P ++KP   GSS+GI ++K    +   +   +++      
Sbjct: 143 TIEYQIIKSSTLPS---IPYPLIVKPSHLGSSIGIKIVKNHNELSYAI--DTAFELDSSA 197

Query: 167 LIEQYVDGIELT--CGVMGDASLDVTEIAVPKSD-FYSYELKYSSLNSTHVLPAKIPL-- 221
           +IE Y++ ++     G   D  ++ + I  P+ D F  Y  KY    S    P +  L  
Sbjct: 198 IIEPYIEDVKEYNLAGCKIDGEIEFSIIEEPQKDKFLDYFQKYMDF-SRSGKPQEANLGL 256

Query: 222 ---DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
              D  KE  R  +   +  G   I R DF    ++ +V+  EIN  PG     +F + 
Sbjct: 257 SVKDNMKEAFRRVYNYGEFDG--AIIRCDFFV--INNEVYLNEINPNPGSLANYLFNDF 311


>gi|327334538|gb|EGE76249.1| D-alanine--D-alanine ligase B [Propionibacterium acnes HL097PA1]
          Length = 178

 Score = 69.3 bits (168), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 36/103 (34%), Positives = 59/103 (57%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62
           VL GG+S +R++SL SG+  A AL   G +V + D+D ++   L      + F +LHG  
Sbjct: 7   VLAGGLSHQRDISLKSGRTVAQALRRVGHEVVEADIDSALIETLRANDGAVVFPMLHGGL 66

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV 105
           GE+G +  +L+L+ IPY  S      +S DK  + + V++ G+
Sbjct: 67  GENGALLEVLQLMGIPYVGSSPATCRISFDKSIASRAVATAGI 109


>gi|307720863|ref|YP_003892003.1| D-alanine/D-alanine ligase [Sulfurimonas autotrophica DSM 16294]
 gi|306978956|gb|ADN08991.1| D-alanine/D-alanine ligase [Sulfurimonas autotrophica DSM 16294]
          Length = 345

 Score = 69.3 bits (168), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 74/319 (23%), Positives = 133/319 (41%), Gaps = 49/319 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAF----- 55
           + +L GG S E E+S+ S       L +        D D +  LV A     + F     
Sbjct: 3   LTILFGGASFEHEISIVSAITLKEKLSNFDLTFIFCDSDHTFYLVEASKMKAVTFSKGEH 62

Query: 56  -----------------------------NVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
                                        N++HG  GEDG + A+L+   I Y    + A
Sbjct: 63  KKMPVLTLAQGAFVQKSMFSKSEYNSVVLNLIHGADGEDGTIAALLDFYSIKYIGPRVDA 122

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL-ISPPY--VIKPLKGGSSLGIIV 143
              S DK  +K +  + GV      ++++    ++H  I  PY  +IKP   GSS+G+ +
Sbjct: 123 CTFSYDKRYTKYLCEAIGVKSVKYEVMHK----NEHCNIQTPYPIIIKPSSLGSSIGVSI 178

Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDVTEIAVP-KSDFY 200
           + KD+S  LD     ++   D +++E +++G++     G   + ++  + +  P K +F 
Sbjct: 179 V-KDES-ELDYALDVAFEFDDTVIVEPFLEGVKEYNLAGYYANGAMHYSIVEEPHKEEFL 236

Query: 201 SYELKYSSLN-STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
            +E KY   + S  VL A +  ++   ++      ++ +    + R DF     + +V  
Sbjct: 237 DFEKKYMDFSRSEQVLTADVSEELTLRLKTNFEKVYRGLFEGALIRCDFFV--FNDEVLL 294

Query: 260 LEINVQPGMTPVSIFPEMA 278
            EIN  PG     +F + A
Sbjct: 295 NEINPIPGSMANYLFEDFA 313


>gi|170104100|ref|XP_001883264.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164641717|gb|EDR05976.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 375

 Score = 68.9 bits (167), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 82/327 (25%), Positives = 145/327 (44%), Gaps = 52/327 (15%)

Query: 21  ACASALEDAGFKVSQIDVDRSVGLVLA--------HLKPDLAFNVLHGN---FGEDGLVQ 69
           A A AL   G++V ++   R++   LA        H   D+ FN+  G     G +G V 
Sbjct: 40  AIAEALTALGYRVDRVGNARALISRLASYDREDSFHCPWDIVFNICAGRSGIAGREGHVP 99

Query: 70  AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN-RFTMDSQHLISP-- 126
           +ILE   IP+  S     +L +DK ++K V+   G+   P  +V+   T +     SP  
Sbjct: 100 SILECYNIPFVLSDSSTFSLCLDKAKTKMVLEFSGIATAPFAVVHPGQTAEDAIQKSPHR 159

Query: 127 -------PYVIKPLKGGSSLGIIVIKK--DQSIPLDLLQSSSWNH-GDQLLIEQYVDGIE 176
                  P  +KP    +  GI  + K  + S    ++QS  +   G  +LIE++++G E
Sbjct: 160 PLLYRQLPLFVKPCTESTGKGIWKMSKITNWSQLNQVVQSLQYKFPGHDMLIEKFLNGRE 219

Query: 177 LTCGVMGDA-------SLDVT----------EIAVP-----KSDFYSYELKYSSLNSTHV 214
            T G++G         ++++           + A P      +DFYS+ +K S ++   +
Sbjct: 220 FTVGIVGTGENARVIFAMEIKYRLHETKADHDAAQPIASEDDADFYSFAIK-SCVHWNEI 278

Query: 215 LPAKIPLD-IYKEVQRLAFLAHQAIGCRGISRSDF---LFDPLSRKVFWLEINVQPGMTP 270
           +      D +      LA  A++ +GCR + R D    + DP   +   +E+N  PG+ P
Sbjct: 279 VDLCNGSDQLATRAGELALRAYRCMGCRDVGRIDVRCDVLDPDLAQPHIMELNPLPGIQP 338

Query: 271 -VSIFPEMAAYAGYSFRELLLWMVEDA 296
             S   + A + G S+  L+  +++ A
Sbjct: 339 GYSDLVKGAEFVGISYEALVGQIMDSA 365


>gi|322380385|ref|ZP_08054591.1| D-alanyl-alanine synthetase A [Helicobacter suis HS5]
 gi|321147175|gb|EFX41869.1| D-alanyl-alanine synthetase A [Helicobacter suis HS5]
          Length = 348

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 76/323 (23%), Positives = 132/323 (40%), Gaps = 50/323 (15%)

Query: 2   AVLMGGISSEREVSLSSGKACASALE---------DAGFKVSQID-------------VD 39
            +L GG S E E+S+ S  A    L+         D   K   ID               
Sbjct: 4   GLLFGGKSYEHEISIVSAVALKEVLDAQISSFIFLDGAHKFYLIDKKDMRSHFFSSGQYK 63

Query: 40  RSVGLVLAH-------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           +S  LVL H             +   +  N++HG  GEDG + + L+   + +    +  
Sbjct: 64  KSPELVLKHGGFYTHGLLGGKGISMSVLINLIHGGDGEDGKIASFLDFFGVSFIGPRVEG 123

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
             LS  K  +K +    G+ + P I + +  + +   +  P ++KP + GSS+GI VIK 
Sbjct: 124 CVLSYSKYFTKMLAKEKGINILPYIFLEQHDIGALQNLDYPLIVKPNRLGSSIGIRVIKD 183

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIE----LTCGVM-----GDASLDVTEIAVPKS 197
            + I   L +   ++   Q+LIE +  G++      C +      G     V E    K 
Sbjct: 184 AKDIAYVLDEVFEFD--SQVLIEPFKQGVKEYNLAGCKIQSEEEEGKFVFSVVE-EPHKK 240

Query: 198 DFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256
           ++  +E KY     T  V  A I   + ++++++  L +       I R DF    ++ +
Sbjct: 241 EWLGFEEKYLDFGRTQKVKQADISSHLEEKMRQIFQLIYDPFFVGAIIRCDFFV--INEE 298

Query: 257 VFWLEINVQPGMTPVSIFPEMAA 279
           V+  EIN  PG     +F + ++
Sbjct: 299 VYLNEINPIPGSLAHYLFEDFSS 321


>gi|322378889|ref|ZP_08053306.1| D-alanine--D-alanine ligase [Helicobacter suis HS1]
 gi|321148699|gb|EFX43182.1| D-alanine--D-alanine ligase [Helicobacter suis HS1]
          Length = 350

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 76/323 (23%), Positives = 132/323 (40%), Gaps = 50/323 (15%)

Query: 2   AVLMGGISSEREVSLSSGKACASALE---------DAGFKVSQID-------------VD 39
            +L GG S E E+S+ S  A    L+         D   K   ID               
Sbjct: 6   GLLFGGKSYEHEISIVSAVALKEVLDAQISSFIFLDGAHKFYLIDKKDMRSHFFSSGQYK 65

Query: 40  RSVGLVLAH-------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           +S  LVL H             +   +  N++HG  GEDG + + L+   + +    +  
Sbjct: 66  KSPELVLKHGGFYTHGLLGGKGISMSVLINLIHGGDGEDGKIASFLDFFGVSFIGPRVEG 125

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
             LS  K  +K +    G+ + P I + +  + +   +  P ++KP + GSS+GI VIK 
Sbjct: 126 CVLSYSKYFTKMLAKEKGINILPYIFLEQHDIGALQNLDYPLIVKPNRLGSSIGIRVIKD 185

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIE----LTCGVM-----GDASLDVTEIAVPKS 197
            + I   L +   ++   Q+LIE +  G++      C +      G     V E    K 
Sbjct: 186 AKDIAYVLDEVFEFD--SQVLIEPFKQGVKEYNLAGCKIQSEEEEGKFVFSVVE-EPHKK 242

Query: 198 DFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256
           ++  +E KY     T  V  A I   + ++++++  L +       I R DF    ++ +
Sbjct: 243 EWLGFEEKYLDFGRTQKVKQADISSHLEEKMRQIFQLIYDPFFVGAIIRCDFFV--INEE 300

Query: 257 VFWLEINVQPGMTPVSIFPEMAA 279
           V+  EIN  PG     +F + ++
Sbjct: 301 VYLNEINPIPGSLAHYLFEDFSS 323


>gi|317154408|ref|YP_004122456.1| D-alanine--D-alanine ligase [Desulfovibrio aespoeensis Aspo-2]
 gi|316944659|gb|ADU63710.1| D-alanine--D-alanine ligase [Desulfovibrio aespoeensis Aspo-2]
          Length = 334

 Score = 68.2 bits (165), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 86/306 (28%), Positives = 134/306 (43%), Gaps = 39/306 (12%)

Query: 16  LSSGKACASALE-DAGFKVSQID---------VDR--SVGLVLAHL----KPDLAFNV-- 57
           L  G +C  A E D+   ++ I+         VDR  ++  ++A L    + D+ FN+  
Sbjct: 14  LKEGLSCEEAAEFDSEVTIAGIERVLTGLGHAVDRIGNISALVARLAAGDRWDMVFNIAE 73

Query: 58  -LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116
            LHG  G +  V A+L+   IPY+ SG    AL++ K  +  VV S GV      +V R 
Sbjct: 74  GLHG-LGREAQVPALLDAWSIPYSFSGPELMALTLHKGWTNAVVRSLGVATADFAVVTRI 132

Query: 117 T-MDSQHLISPPYVIKPLKGGSSLGII--VIKKD----QSIPLDLLQSSSWNHGDQLLIE 169
             +DS  L  P +V KP+  G+S GI    + +D    + +  DLL +         L+E
Sbjct: 133 EDVDSMSLPFPLFV-KPVAEGTSKGITERSLVRDPAALREVCADLLTTFR----QPALVE 187

Query: 170 QYVDGIELTCGVMGDAS----LDVTEI-AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
            Y+ G E T G++G         V E+ AV K D  +Y  +     +  V    +  ++ 
Sbjct: 188 TYLPGREFTVGLLGSGDESRVAGVIEVRAVGKGDATAYTYENKQDWTRRVAYELVDDEVA 247

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI-FPEMAAYAGY 283
                LA  A + +GC    R D          F +E+N  PG+ P S   P +    G 
Sbjct: 248 MAAASLALKAWRGLGCLDAGRIDVRLGADGAPRF-IEVNPLPGLNPESSDLPILWRLGGK 306

Query: 284 SFRELL 289
           S+  L+
Sbjct: 307 SYDALI 312


>gi|317178905|dbj|BAJ56693.1| D-alanyl-alanine synthetase A [Helicobacter pylori F30]
          Length = 347

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 74/321 (23%), Positives = 130/321 (40%), Gaps = 47/321 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---------LAHLKP 51
             VL GG S E E+S+ S  A    L+D       +D +    LV          A +K 
Sbjct: 3   FCVLFGGASFEHEISIVSAIALKEVLKDRIKYFIFLDENHHFYLVEESNMHSKYFAQIKE 62

Query: 52  D--------------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
                                      L  N++HG  GEDG + ++LE   I +    I 
Sbjct: 63  KKLPPLILTRNGLLKSSFLGAKIIELPLVINLVHGGDGEDGKLASLLEFYRIAFIGPRIE 122

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVN-RFTMDSQHLI--SPPYVIKPLKGGSSLGII 142
           AS LS +K  +K      GV     +L+N +   ++  LI  + P++IKP   GSSLG+ 
Sbjct: 123 ASVLSYNKYLTKLYAKDLGVKTLDYVLLNEKNRANALDLIGFNFPFIIKPSNAGSSLGVS 182

Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE----LTCGVMGDASLDVTEIAVPKSD 198
           V+K+++ +   L    ++ +  ++LIE ++  ++      C +  D      E    K +
Sbjct: 183 VVKEEKELIYAL--DGAFEYSKEVLIEPFIQEVKEYNLAGCKIKKDFCFSYIE-EPNKQE 239

Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
           F  ++ KY   +      A +   + ++++      +  +    + R DF    +  +V+
Sbjct: 240 FLDFKQKYLDFSRNKAPKANLSNALEEQLKENFKKLYNDLFDGALIRCDFFV--IENEVY 297

Query: 259 WLEINVQPGMTPVSIFPEMAA 279
             EIN  PG     +F +   
Sbjct: 298 LNEINPIPGSLANYLFDDFKT 318


>gi|121998283|ref|YP_001003070.1| hypothetical protein Hhal_1501 [Halorhodospira halophila SL1]
 gi|121589688|gb|ABM62268.1| conserved hypothetical protein [Halorhodospira halophila SL1]
          Length = 348

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 70/266 (26%), Positives = 111/266 (41%), Gaps = 21/266 (7%)

Query: 51  PDLAFNVLHGNFGE----DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP 106
           P+LA N+    +      +  + A+LEL EIPYT +G  A  LS DK   + + +S GV 
Sbjct: 69  PELAVNLCDNGYCNRLELEANIPALLELFEIPYTGTGGAAMGLSRDKAAVRALAASLGVA 128

Query: 107 VCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGI--IVIKKDQSIPLDLLQSSSWNHGD 164
           V     ++            P VIKP  G  S+G+    + +D       L+  + +   
Sbjct: 129 VPEERTIDLSDPTPALPERYPAVIKPNDGCGSIGMEPDCVVEDAHQAQAYLRRLAGSGAA 188

Query: 165 QLLIEQYVDGIELTCGVMGDAS----------LDVTEIAVPKSDFYSYELKYSS----LN 210
            +L ++Y+ G E T G++G+ +          +D T +        SY  K         
Sbjct: 189 WVLAQEYLPGAEYTVGLVGNPATGLLVLPALVVDYTALPPELPPILSYGSKVDPASPYYQ 248

Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270
           +    PA++  +    ++  A      +G R  +R DF  D L      L+ N  P   P
Sbjct: 249 ALRFAPAQLSEEKRSAMEVAARRLFARVGARDYARVDFRED-LRGVPRLLDFNNHPSWGP 307

Query: 271 VSIFPEMAAYAGYSFRELLLWMVEDA 296
                 MA YAGYS+ +LL  +V  A
Sbjct: 308 DGKLAMMAGYAGYSYADLLERIVRAA 333


>gi|237753178|ref|ZP_04583658.1| D-alanyl-alanine synthetase A [Helicobacter winghamensis ATCC
           BAA-430]
 gi|229375445|gb|EEO25536.1| D-alanyl-alanine synthetase A [Helicobacter winghamensis ATCC
           BAA-430]
          Length = 345

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 63/226 (27%), Positives = 102/226 (45%), Gaps = 9/226 (3%)

Query: 56  NVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR 115
           N++HG  GEDG + ++L+   IPY      A  LS DK   K   +S GV      ++ R
Sbjct: 92  NLIHGGDGEDGTLASLLDFYGIPYIGPRNPACVLSYDKELIKGFAASRGVKCLAHRVLYR 151

Query: 116 FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175
             +    L   P +IKP + GSSLGI V++  +++   L   S++ + ++++IE +++GI
Sbjct: 152 NDLVPSDL-EFPIIIKPARLGSSLGIQVVESQENLQYAL--DSAFEYDEKVIIEPFIEGI 208

Query: 176 ELT--CGVMGDASLDVTEIAVP-KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
           +     G  G   +  + I  P KS F  +E KY   + T         D  K+  + +F
Sbjct: 209 KEYNLAGFKGKDGIQFSFIEEPEKSKFLDFEKKYLDFSRTSNAKEAEISDALKQALQESF 268

Query: 233 LAHQAIGCRG-ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
                    G + R DF         +  EIN  PG     +F + 
Sbjct: 269 TRLYNNAFEGALIRCDFFIK--DNDCYLNEINPVPGSLANYLFTDF 312


>gi|149922566|ref|ZP_01910996.1| hypothetical protein PPSIR1_41439 [Plesiocystis pacifica SIR-1]
 gi|149816593|gb|EDM76088.1| hypothetical protein PPSIR1_41439 [Plesiocystis pacifica SIR-1]
          Length = 338

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 74/291 (25%), Positives = 126/291 (43%), Gaps = 28/291 (9%)

Query: 26  LEDAGFKVSQIDVDRSVG---LVLAHLKPDLAFNVL---HGNFGEDGLVQAILELLEIPY 79
           LE+ G  V  + V  S+      L   +P + FN+L    G+     LV A LEL  + Y
Sbjct: 43  LENYGHTVLVVGVSDSLEPLERALDEFRPHVVFNLLEEFQGSRAGSHLVLAYLELRGVAY 102

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSL 139
           T        ++ DK  SK ++   GV     ++V       +  +  P ++K L G +S 
Sbjct: 103 TGCNPRGQMMAQDKALSKALLLHYGVQTPDFVVVPVGRKPPRKRLRFPLIVKSLHGDASE 162

Query: 140 GII---VIKKDQSIP--LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD---VTE 191
           G+    V++    +   +D +     +HGD L +E+Y+ G EL CGV+G   L    V E
Sbjct: 163 GLAQASVVRSPSKLAARVDFIHR---HHGDAL-VEEYISGRELYCGVIGYRQLTAFPVWE 218

Query: 192 IAVPK---------SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
           + + K         +    ++L Y       + PA++P  + + +Q ++  A   +   G
Sbjct: 219 LRMTKLPTSALNIATQRVKWDLAYQDRVGVELGPARLPPALERRIQDMSKRAFSLLKMTG 278

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
             R D+       + ++LE N    +  V  F   A  AG S+ ELL  ++
Sbjct: 279 WGRMDYRLAE-DGEPYFLEANPNGDIAHVEEFASSAKAAGLSYLELLHRLI 328


>gi|332703219|ref|ZP_08423307.1| D-alanine--D-alanine ligase [Desulfovibrio africanus str. Walvis
           Bay]
 gi|332553368|gb|EGJ50412.1| D-alanine--D-alanine ligase [Desulfovibrio africanus str. Walvis
           Bay]
          Length = 339

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 70/259 (27%), Positives = 112/259 (43%), Gaps = 19/259 (7%)

Query: 52  DLAFNVLHG--NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109
           DL FN+  G   FG +  +  +L+   IPYT S  +  AL + K  +K VV + G+P  P
Sbjct: 66  DLVFNIAEGLNGFGRESQIPCVLDWHGIPYTFSEPMTLALGLHKGMTKHVVRAAGIPT-P 124

Query: 110 SILVNRFTMDSQHLISP-PYVIKPLKGGSSLGIIVIKK--DQSIPLDLLQSSSWNHGDQL 166
              V     ++  +  P P  +KP+  G+ LGI    +  D++  +D            +
Sbjct: 125 DFAVVAEPAEAAKVDLPFPLFVKPVAEGTGLGIGSASRVTDKAGLMDACARLIERFRQPV 184

Query: 167 LIEQYVDGIELTCGVMGD-------ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI 219
           L+E ++ G ELT GV+G         +L+V          Y Y  K       H    +I
Sbjct: 185 LVETFLPGRELTVGVVGTGAKARSVGALEVIFGDQADPSAYGYINKQDWERRMHY---RI 241

Query: 220 PLDI-YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV-SIFPEM 277
             D   +  +++A  A +A+GCR   R D   D      F +E+N   G+ P  S  P +
Sbjct: 242 ADDAEARTAEQVALDAWRALGCRDGGRVDLRLDGAGVPNF-IEVNPLAGLNPTYSDLPIL 300

Query: 278 AAYAGYSFRELLLWMVEDA 296
                  ++EL+  +V  A
Sbjct: 301 CRLNNMPYQELIAAIVHSA 319


>gi|313675049|ref|YP_004053045.1| d-alanine--d-alanine ligase [Marivirga tractuosa DSM 4126]
 gi|312941747|gb|ADR20937.1| D-alanine--D-alanine ligase [Marivirga tractuosa DSM 4126]
          Length = 894

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 79/295 (26%), Positives = 132/295 (44%), Gaps = 57/295 (19%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+ F  LHG  GEDG VQA LE L IPY  S + +S ++++K  + +++ + G+ V    
Sbjct: 587 DVTFIALHGRPGEDGAVQAELEKLNIPYNGSDVESSKITINKYDTNEILKNAGISVADHR 646

Query: 112 LV--NRFTMDSQHLI-------SPPYVIKPLKGGSSLGIIVIK----------------- 145
           LV  N++  + +  I       S P + KP   G S  +  IK                 
Sbjct: 647 LVFENKWQSNKEAEIAAIEEQLSYPLIAKPADDGCSSAVKKIKNKAELEAFAGMMFRPQA 706

Query: 146 ---KDQSIPLDLLQSSSWNHGDQLLIEQYVDG------IELTCGVMG----DASLDVTEI 192
              +D +  L L ++  +   +  L+E+ ++       +E+T G++     D S++  EI
Sbjct: 707 EFIEDLANILKLKKNEEFPQKNFFLLEELIEKKDAKYFLEITGGLLTHFKEDGSIEY-EI 765

Query: 193 AVPKS-----DFYSYELKYSSLNSTHVLPAKIP--LDIYKEV--QRLAFLAHQA--IGCR 241
             P       +  S E K+ +    ++ PA+     + YK V  Q  A L   A  +   
Sbjct: 766 FEPSEALAGGEVLSLEEKFLAGEGQNITPARYTPQAENYKVVAEQVKATLKKTAEVLNIT 825

Query: 242 GISRSDFL---FDPLSRKVFWLEINVQPGMTPVS-IFPEMA--AYAGYSFRELLL 290
           G +R D     ++ LS +   +E+N  PGMTP + IF + A   Y  Y F + +L
Sbjct: 826 GYARIDAFVRVYEDLSVETIIIEVNSLPGMTPATCIFHQTAINGYKPYDFIDKIL 880



 Score = 62.8 bits (151), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 43/145 (29%), Positives = 69/145 (47%), Gaps = 17/145 (11%)

Query: 33  VSQIDVDRSVGLVLAHLKP-------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
           +S  D D+ +  V   + P       D AF  LHG +GEDG +Q ILE   IP++ +GIL
Sbjct: 86  LSDEDWDKLIAEVGQKINPSDFKKHIDFAFLALHGPYGEDGNIQGILEWNGIPFSGAGIL 145

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ----------HLISPPYVIKPLKG 135
            SA+ + K+  +Q +   G     S ++N+   + Q            +  P VIK    
Sbjct: 146 PSAIGISKIAQRQFLQQAGFEGPKSRILNQNDWNHQPHENIYQNLKKELGLPLVIKAPHQ 205

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSW 160
           GSS+G+ ++ +D     + L   S+
Sbjct: 206 GSSIGVSILNEDDPNKFEKLVQKSF 230



 Score = 48.9 bits (115), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 69/153 (45%), Gaps = 12/153 (7%)

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS-----LDVTEIAVPKSDFY 200
           K QSI L  + S      + LLIE +++G E +C V+ D +     L  TEI   K D +
Sbjct: 290 KKQSIKLKAIDSE-----NSLLIESFIEGKEFSCIVIQDENERPIALPPTEIRKGK-DVF 343

Query: 201 SYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260
            Y  KY    S  + P   P DI ++++       +A+     +R D  F     KVF  
Sbjct: 344 DYRSKYLPGISRKITPIDAPQDIIEKIRSQCAALFKALQIDVYARIDG-FITKEGKVFLN 402

Query: 261 EINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           + N   GM P S F   AA  G +  + L +++
Sbjct: 403 DPNTTSGMLPSSFFFHQAAEIGLNPSQFLSYII 435


>gi|242047420|ref|XP_002461456.1| hypothetical protein SORBIDRAFT_02g002970 [Sorghum bicolor]
 gi|241924833|gb|EER97977.1| hypothetical protein SORBIDRAFT_02g002970 [Sorghum bicolor]
          Length = 945

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 83/339 (24%), Positives = 133/339 (39%), Gaps = 81/339 (23%)

Query: 29  AGFKVS-QIDVDRSVGLVLAHLKPDLA--FNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
           AGF ++ +  +  S+   + H+K   A  F  +HG  GEDG +Q +LE   +P+T  G +
Sbjct: 602 AGFDIAYEQPIKYSLQQWIDHVKETEAVVFIAVHGGIGEDGTIQTLLESAGVPFTGPGPI 661

Query: 86  ASALSMDKMRSKQVV---SSCGVPVCP-----------SILVNRFTMDSQHLISPPYVIK 131
           AS   +DK+ S   V   +S GV   P           S LV+ +      L +    +K
Sbjct: 662 ASRTCIDKVASSLAVDHLASYGVHTIPKDVRATEEVLKSSLVDIWNELKAKLRTETVCVK 721

Query: 132 PLKGGSSLGIIVI--------------KKDQSIPLDLLQSSSWNHG---------DQLLI 168
           P + G S G+  +              +K Q +P + L   S  HG         + L+ 
Sbjct: 722 PARDGCSTGVARLCCPKDLEVYTNALRRKFQHLPANCL---SRAHGVIEMPVPPPESLIF 778

Query: 169 EQYV-------------------------DGIELTCGVMGDA----SLDVTEIAVPKSDF 199
           E ++                         D +E+T GV+G      SL+ +       D 
Sbjct: 779 EPFIETDEIIISNKLGNGSARHLVWKGENDWLEITVGVVGKRGEMHSLNPSITVKESGDI 838

Query: 200 YSYELKYSSLNSTHVLPAKIPL---DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256
            S E K+      ++ P    +   D  +  ++   +   A+G  G SR D   +  S +
Sbjct: 839 LSLEEKFQGGTGINLTPPPATIMGEDALQRCKKSIEMMANALGLEGFSRIDAFVNVRSGE 898

Query: 257 VFWLEINVQPGMTPVSIF------PEMAAYAGYSFRELL 289
           V  +E+N  PGMTP ++        E   Y    FR LL
Sbjct: 899 VLLIEVNTVPGMTPSTVLIHQALAEEPPVYPHKFFRTLL 937



 Score = 62.8 bits (151), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 69/296 (23%), Positives = 126/296 (42%), Gaps = 48/296 (16%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+ F V+HG FGEDG +Q +LE   +P+  +       + DK  +   +++ G    P+ 
Sbjct: 159 DIVFPVIHGKFGEDGGIQELLEKANVPFVGTPSKECERAFDKHNASLELNAQGFLTVPNF 218

Query: 112 LVNR-----------FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160
           LV +           F   + +  +   ++KP + GSS+G++V            +  S 
Sbjct: 219 LVEKDKLAKPELEAWFKTVNLNKENGKVIVKPTRAGSSIGVVVAYGVNDAAQKAEEIISE 278

Query: 161 NHGDQLLIEQYVD-GIELTCGV--MGDAS------LDVTEIAVPKSD--------FYSYE 203
              D+++IE +++ G E T  V  +G A+      L  TE+ +  S+         ++Y 
Sbjct: 279 GIDDKVIIEVFLEGGTEFTAIVVDVGTANNSQPVVLLPTEVELQYSNSSDTDEDTIFNYR 338

Query: 204 LKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD--FLFDPLSR----- 255
            KY  S    +  P + P ++   +++   L  +  G    +R D  FL  P++      
Sbjct: 339 KKYLPSRQVAYHSPPRFPAEVIDCIRQGISLLFRRFGLHDYARVDGWFLPSPVASLSSAE 398

Query: 256 -----------KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
                       V + +IN+  GM   S   + A+  G+S   +L  +V+ A C R
Sbjct: 399 NSEKFGNTKYGTVLFTDINLISGMEQTSFLFQQASAVGFSHSRILRTVVQHA-CSR 453


>gi|322705322|gb|EFY96909.1| hypothetical protein MAA_07722 [Metarhizium anisopliae ARSEF 23]
          Length = 361

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 87/319 (27%), Positives = 131/319 (41%), Gaps = 53/319 (16%)

Query: 20  KACASALEDAGFKVSQIDVDRSVGLVLA---HLKPDLAFNVLHGNFG--EDGLVQAILEL 74
           KA A+AL+  G  V+ +    S+   LA   H   DL FN+  G  G   +  V A+LE 
Sbjct: 41  KAVAAALQGLGHDVTLVPGVSSLVEHLAAGQHKNWDLVFNMAQGFHGPARESHVPALLEA 100

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTMDSQHLISP--PYVI 130
             IPYT S     AL  +K  +K ++   GVP  P +++     ++ +   + P  P  +
Sbjct: 101 FLIPYTFSDAATMALCQNKANTKIILEHHGVPNAPFMVIPSEHLSLLNHATLPPKYPLFV 160

Query: 131 KPLKGGSSLGIIVIKKDQS---IPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL 187
           KP   GSS GI    K  +   + L + +  +   G  +L+E ++ G E T  ++G  S 
Sbjct: 161 KPATEGSSKGIDRFNKVNNYAELELAVQKLKAKFPGQDILVESFLSGREFTVSILGTGSC 220

Query: 188 D----------------------VTEIAVPKSDFYS-YELKYS---SLNSTHVLPA-KIP 220
                                    E A  KS       L+Y+    ++  HV  A ++ 
Sbjct: 221 SRVIGIREHIWQTFPENGNGYQATQEFACWKSKLSEGCLLRYNDAHDMDDAHVKAACQVA 280

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLF--DPLSRKVFWLEINVQPGMTP-VSIFPEM 277
           LD +            A+GCR   R D  F  D  +     LE+N   G+ P  S  P  
Sbjct: 281 LDTWT-----------ALGCRDAGRVDIRFSSDDANGVPNVLEVNPIAGLLPGHSPLPAS 329

Query: 278 AAYAGYSFRELLLWMVEDA 296
           A   G SF  LL  ++E A
Sbjct: 330 AEENGLSFEALLTAILESA 348


>gi|292493558|ref|YP_003528997.1| D-alanine--D-alanine ligase [Nitrosococcus halophilus Nc4]
 gi|291582153|gb|ADE16610.1| D-alanine--D-alanine ligase domain protein [Nitrosococcus
           halophilus Nc4]
          Length = 350

 Score = 67.4 bits (163), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 74/322 (22%), Positives = 135/322 (41%), Gaps = 57/322 (17%)

Query: 6   GGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGED 65
           G  S+E   ++   K     L+D  ++ + +D   ++   L    PD   N     +   
Sbjct: 36  GRFSAEDIEAVDRVKEALGELQD--YRFTYLDNHSTLIANLTADPPDFVLNFCDTGYKNQ 93

Query: 66  GL----VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFTM 118
                 + A+LE+L IPY+ +G     +  DK   + V  + G+PV     V   +R   
Sbjct: 94  ARQELHIPALLEMLGIPYSGAGPTCLGMCYDKSLVRSVARTHGIPVPAETFVRGNDRHGA 153

Query: 119 DSQHLISPPYVIKPLKGGSSLGII---VIKKDQSIPLDL----LQSSSWNHGDQLLIEQY 171
            SQ+    P +IKP +   SLGI    ++  +Q     L    ++  +W+    LLI+++
Sbjct: 154 VSQNF---PVLIKPNRADGSLGITKDSLVHDEQQARAYLNKLAMEFPNWD----LLIQEF 206

Query: 172 VDGIELTCGVMGDA----------SLDVTEIAV--------------PKSDFYSYELKYS 207
           + G E + GV+G+           ++D +++                P+S +++ ++KY 
Sbjct: 207 LPGEEYSVGVLGNPASGFMILPILAVDYSKLVASRLPPILAYASKIDPQSPYWT-DIKYC 265

Query: 208 SLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPG 267
                    A +  D+ + +        + +GCR  +R DF  D    ++  LE+N  P 
Sbjct: 266 E--------ASLKEDLRQRLVDYCLFLFERLGCRDYARFDFRTD-AQGEIKLLEVNPNPA 316

Query: 268 MTPVSIFPEMAAYAGYSFRELL 289
                    MA +AGY + ELL
Sbjct: 317 WCWDGKLNLMAGFAGYHYAELL 338


>gi|315636188|ref|ZP_07891442.1| D-alanine-D-alanine ligase [Arcobacter butzleri JV22]
 gi|315479549|gb|EFU70228.1| D-alanine-D-alanine ligase [Arcobacter butzleri JV22]
          Length = 347

 Score = 67.4 bits (163), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 58/237 (24%), Positives = 111/237 (46%), Gaps = 20/237 (8%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+  N+ HG  GEDG++ ++L+   IP+      A  +S +K  +K    S  V    ++
Sbjct: 91  DVVLNLSHGGDGEDGILSSVLDFYSIPFIAPRTEACVVSSNKFLTKGYAKSVNV---NTL 147

Query: 112 LVNRFTMDSQ-HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
               FT D +  + S P ++KP+K GSS+G+ ++K  + +   L    ++   D ++IE 
Sbjct: 148 DYKYFTKDDKIEVDSFPVILKPVKLGSSIGVAIVKSQEELQYAL--DVAFEFDDAIIIEP 205

Query: 171 YVDGIELT--CGVMGDASLDVTEIAVP-KSDFYSYELKYSSLNSTHV-----LPAKIPLD 222
           ++ G++     G   +     + I  P K++F  ++ KY   + T       L  K+  +
Sbjct: 206 FISGVKEYNLAGTKVNGEFKFSIIEEPQKAEFLDFDKKYLDFSRTSKAKEVDLGEKLNNE 265

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279
           I +  +RL    +  +    I R DF    ++ +++  EIN  PG     +F +  +
Sbjct: 266 IKESFKRL----YNTLFEGSIIRCDFF--VINDEIYLNEINSIPGSMANYLFEDFQS 316


>gi|76880178|dbj|BAE45861.1| D-alanine-D-alanine ligase [Physcomitrella patens subsp. patens]
          Length = 417

 Score = 67.4 bits (163), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 81/303 (26%), Positives = 131/303 (43%), Gaps = 70/303 (23%)

Query: 1   MAVLMGGISSEREVSLSSGKAC-------------------------ASAL------EDA 29
           +A++ GG S ER +SL+S ++                           SAL      ED 
Sbjct: 113 VALVCGGPSEERGISLNSARSVLDHLEGGDVSVSCYYMNQKLEPFGIPSALMYSNTPEDF 172

Query: 30  GFKVSQIDVD-RSVGLVLAHLKP--DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
            FK++      +S    L HL+   D+ F  LHG FGEDG +QA+LE   +PY  +G  A
Sbjct: 173 DFKIASTARSFKSQAEFLEHLQATSDIVFPALHGRFGEDGGIQALLESAGLPYIGTGAAA 232

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI-----------SPPYVIKPLKG 135
           + ++ DK  +   ++  G    P  LV    +D   L            S   V+KP + 
Sbjct: 233 AQVAFDKYDAAAEMAWHGFATLPIFLVENGKVDINRLRGWFEDNNINANSGRVVVKPARS 292

Query: 136 GSSLGIIVIKK-DQSIP-LDLLQSSSWNHGDQLLIEQYVDG-IELTCGVM----GDASLD 188
           GSS+G+ V +  D ++   + L +   N  D+++IE + +G +E T  V+    G+ +  
Sbjct: 293 GSSVGVSVAEGLDTAVQHAEALFNKGGN--DRVVIEMFAEGALEFTALVLDVGFGNETRP 350

Query: 189 V----TEIAVPKSDF----------YSYELKY--SSLNSTHVLPAKIPLDIYKEVQRLAF 232
           V    TE+ +   D+          ++Y  KY  +   S H  P      I K   R AF
Sbjct: 351 VALFPTEVELSGLDYESDGENETAIFNYRRKYLPTRQVSYHTPPRFSEETINKIRNRAAF 410

Query: 233 LAH 235
           +++
Sbjct: 411 ISN 413


>gi|157736996|ref|YP_001489679.1| D-alanyl-alanine synthetase A [Arcobacter butzleri RM4018]
 gi|157698850|gb|ABV67010.1| D-alanine--D-alanine ligase [Arcobacter butzleri RM4018]
          Length = 347

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 58/237 (24%), Positives = 111/237 (46%), Gaps = 20/237 (8%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+  N+ HG  GEDG++ ++L+   IP+      A  +S +K  +K    S  V    ++
Sbjct: 91  DVVLNLSHGGDGEDGILSSVLDFYSIPFIAPRTEACVVSSNKFLTKGYAKSVNV---NTL 147

Query: 112 LVNRFTMDSQ-HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
               FT D +  + S P ++KP+K GSS+G+ ++K  + +   L    ++   D ++IE 
Sbjct: 148 DYKYFTKDDKIEVDSFPIILKPVKLGSSIGVAIVKSQEELQYAL--DVAFEFDDAIIIEP 205

Query: 171 YVDGIELT--CGVMGDASLDVTEIAVP-KSDFYSYELKYSSLNSTHV-----LPAKIPLD 222
           ++ G++     G   +     + I  P K++F  ++ KY   + T       L  K+  +
Sbjct: 206 FISGVKEYNLAGTKVNGEFKFSIIEEPQKAEFLDFDKKYLDFSRTSKAKEVDLGEKLNNE 265

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279
           I +  +RL    +  +    I R DF    ++ +++  EIN  PG     +F +  +
Sbjct: 266 IKESFKRL----YNTLFEGSIIRCDFF--VINDEIYLNEINSIPGSMANYLFEDFQS 316


>gi|305432181|ref|ZP_07401345.1| D-alanine-D-alanine ligase [Campylobacter coli JV20]
 gi|304444724|gb|EFM37373.1| D-alanine-D-alanine ligase [Campylobacter coli JV20]
          Length = 346

 Score = 67.0 bits (162), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 58/234 (24%), Positives = 106/234 (45%), Gaps = 9/234 (3%)

Query: 48  HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV 107
           +L  D   N++HG  GEDG + ++LE  +I +    + AS LS +K  +K    S GV  
Sbjct: 84  NLDLDCVINLIHGRDGEDGKIASLLEFFDIKFIGPRVEASVLSFNKEFTKLYAQSVGVKT 143

Query: 108 CPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL 167
               ++ R +         P ++KP + GSS+GI + K ++   LD  +   +     +L
Sbjct: 144 LDYQML-RKSQKQDFTAHFPCILKPARLGSSIGISIAKNEKE--LDYAKDVGFEFDTDIL 200

Query: 168 IEQYVDGIELT--CGVMGDASLDVTEIAVP-KSDFYSYELKYSSLNS-THVLPAKIPLDI 223
           +E +   I+     G M       + I  P K +F ++E KY S +    ++ A +  ++
Sbjct: 201 VEDFKSNIKEYNLAGCMIKDEFIFSIIEEPKKKEFLNFEQKYLSFSGHNELIEADLSEEL 260

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
            ++++      +  +    + R DF    L  +V+  EIN  PG     +F + 
Sbjct: 261 KQKLKDNFAKIYNPLFKGALIRCDFFI--LDNEVYLNEINPNPGSLANYLFKDF 312


>gi|308272543|emb|CBX29147.1| hypothetical protein N47_J01280 [uncultured Desulfobacterium sp.]
          Length = 326

 Score = 67.0 bits (162), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 72/302 (23%), Positives = 131/302 (43%), Gaps = 30/302 (9%)

Query: 20  KACASALEDAGFKVSQIDVD---RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ---AILE 73
           +A + AL   GF    +  D    +VG+ L  L P   FN++    G   L+    + L+
Sbjct: 28  EAVSKALRPLGFNPVPVKFDLNLEAVGIRLQKLNPAFVFNLVESVNGCGSLIHLAPSFLD 87

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPL 133
            L I YT S   A  L+ +K+  K  +++ G+    +  ++  ++ S+  ++  Y+IK +
Sbjct: 88  YLRIAYTGSKTQAMFLTSNKLLGKDYLAANGINTSKAYCLS--SLKSKTPVNGRYIIKSV 145

Query: 134 KGGSSLG-----IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG-------- 180
              +S+G     ++ +K    +   L +  S   GD    E+Y+DG E            
Sbjct: 146 WEHASIGMSQDSVVYVKSAPELIAKLERFRSSMIGD-FFCEEYIDGREFNIALLSGPEGV 204

Query: 181 -VMGDASLDVTEIAVPKSDFYSYELKYSS-----LNSTHVLP-AKIPLDIYKEVQRLAFL 233
            V+  A +  T+    K     Y  K+ +     LN+           D+ + ++ ++  
Sbjct: 205 EVLPPAEILFTDYPPDKLKIVDYSAKWKTDSFEYLNTNRTFNFTSDDRDLIESLKIISRK 264

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
                G RG +R DF  D  S +++ LEIN  P ++P S F   +   G  F E++  ++
Sbjct: 265 CWDLFGLRGYARVDFRIDE-SGRLWVLEINANPCISPDSGFVAASKMIGLGFPEIIKRII 323

Query: 294 ED 295
           ED
Sbjct: 324 ED 325


>gi|317148223|ref|XP_001822597.2| hypothetical protein AOR_1_704134 [Aspergillus oryzae RIB40]
          Length = 375

 Score = 67.0 bits (162), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 79/297 (26%), Positives = 124/297 (41%), Gaps = 52/297 (17%)

Query: 48  HLKPDLAFNV---LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCG 104
           H + DLAF++   +HG  G +  +  +LE   IP+  S     AL +DK ++K ++   G
Sbjct: 70  HKEWDLAFSISEGMHG-VGREAQIPGLLEAYHIPHVFSDAATLALCLDKGKTKMILEQFG 128

Query: 105 VPVCPSILVN--------------RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK-DQS 149
           +P  P  +V                 TM  Q L S P  IKP   GSS GI    K D  
Sbjct: 129 IPTAPFAVVPASWTKADCTLTQLLEKTMHGQKLSSFPLFIKPACEGSSKGIYPSSKVDNF 188

Query: 150 IPLD----LLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS----LDVTEI--------- 192
             L+    +LQ+     G  +LIE ++ G E T  ++G       +  T I         
Sbjct: 189 TELERGIQVLQTRF--PGASILIETFLSGQEYTVSIIGTGKRSRVIGTTHIDWEGLSRQK 246

Query: 193 ----AVPKSDFYSYELKYSSLNSTHVLPAKIPLDI--------YKEVQRLAFLAHQAIGC 240
                  K    + +  +  +N+ +   A  P            + V+ LA  A +A+ C
Sbjct: 247 QQASVAEKGPANTSDGSFWDVNNKNGPDADEPERFLNSRDNPNVQAVEDLALQAWRALEC 306

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTP-VSIFPEMAAYAGYSFRELLLWMVEDA 296
             + R D  +   +R  + LEIN  PG+ P  SI    A + G S +EL+  +++ A
Sbjct: 307 CDVGRVDIRYGADNRP-YVLEINPLPGLRPDWSILARTAVHEGISHKELIGKVIDSA 362


>gi|58045586|gb|AAW65101.1| vancomycin resistance protein [Enterococcus gallinarum]
          Length = 148

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 78/145 (53%), Gaps = 10/145 (6%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYV 129
           E+PY    + ASAL M+K    Q+  + G+   P++L++R+  D   +         P  
Sbjct: 3   ELPYVGCHVAASALCMNKWLLHQLADTMGIASAPTLLLSRYENDPATIDRFIQDHGFPIF 62

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           IKP + GSS GI  +    ++   L  ++++ +G  +LI++ + GIE+ CG++G+  L +
Sbjct: 63  IKPNEAGSSKGITKVTDKTALQSAL--TTAFAYGSTVLIQKAIAGIEIGCGILGNEQLTI 120

Query: 190 TEI-AVPKSD-FYSYELKYSSLNST 212
               A+   D F+ +E KY  +++T
Sbjct: 121 GACDAISLVDGFFDFEEKYQLISAT 145


>gi|315638159|ref|ZP_07893341.1| D-alanine-D-alanine ligase [Campylobacter upsaliensis JV21]
 gi|315481695|gb|EFU72317.1| D-alanine-D-alanine ligase [Campylobacter upsaliensis JV21]
          Length = 347

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 75/321 (23%), Positives = 134/321 (41%), Gaps = 51/321 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGF-------------KVSQIDVD-------- 39
           +A+L GG S E E+S+ S       L++  +             K S ++          
Sbjct: 4   LAILFGGNSYEHEISIVSAVVLKKVLDEEPYFIFCDEEREFYLIKASNLNAKTFSSKAYK 63

Query: 40  RSVGLVLAH-------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           +   L+L               L+     N++HG  GEDG + A+ E   I +    + A
Sbjct: 64  KEKKLILKQGGFYLEGFLGEKKLEIKCVINLIHGRDGEDGKIAALFEFFNINFIGPRLEA 123

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--QHLISP--PYVIKPLKGGSSLGII 142
           S LS +K  +K    S GV       ++ FT+    Q    P  P ++KP++ GSS+GI 
Sbjct: 124 SVLSFNKELTKLYAKSVGVKT-----LDYFTLKKGLQTSFKPNFPCILKPVRLGSSIGIS 178

Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDVTEIAVP-KSDF 199
           +   ++   L+  +   +   D LL+E +   I+     G M    L  + I  P K +F
Sbjct: 179 IANNEEE--LNYGKDVGFEFDDTLLVEDFKKDIKEYNLAGCMIKDELIFSIIEEPKKKEF 236

Query: 200 YSYELKYSSLNS-THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
             +E KY S +  + ++ A +  ++ ++++      +  +    + R DF    L  +V+
Sbjct: 237 LDFEQKYLSFSGHSELIEADLSEELKEKLKEAFSKIYNPLFKGALIRCDFFI--LDNEVY 294

Query: 259 WLEINVQPGMTPVSIFPEMAA 279
             EIN  PG     +F +  +
Sbjct: 295 LNEINPNPGSLANYLFKDFNS 315


>gi|58045582|gb|AAW65099.1| vancomycin resistance protein [Enterococcus gallinarum]
          Length = 146

 Score = 66.6 bits (161), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 78/145 (53%), Gaps = 10/145 (6%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYV 129
           E+PY    + ASAL M+K    Q+  + G+   P++L++R+  D   +         P  
Sbjct: 1   ELPYVGCHVAASALCMNKWLLHQLADTMGIASAPTLLLSRYENDPATIDRFIQDHGFPIF 60

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           IKP + GSS GI  +    ++   L  ++++ +G  +LI++ + GIE+ CG++G+  L +
Sbjct: 61  IKPNEAGSSKGITKVTDKTALQSAL--TTAFAYGSTVLIQKAIAGIEIGCGILGNEQLTI 118

Query: 190 TEI-AVPKSD-FYSYELKYSSLNST 212
               A+   D F+ +E KY  +++T
Sbjct: 119 GACDAISLVDGFFDFEEKYQLISAT 143


>gi|57242125|ref|ZP_00370065.1| D-alanine--D-alanine ligase [Campylobacter upsaliensis RM3195]
 gi|57017317|gb|EAL54098.1| D-alanine--D-alanine ligase [Campylobacter upsaliensis RM3195]
          Length = 346

 Score = 66.6 bits (161), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 61/233 (26%), Positives = 110/233 (47%), Gaps = 19/233 (8%)

Query: 56  NVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR 115
           N++HG  GEDG + A+ E   I +    + AS LS +K  +K    S GV       ++ 
Sbjct: 92  NLIHGRDGEDGKIAALFEFFNINFIGPRLEASVLSFNKELTKLYAKSVGVKT-----LDY 146

Query: 116 FTMDS--QHLISP--PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
           FT+    Q    P  P ++KP++ GSS+GI +   ++   L+  +   +   D LL+E +
Sbjct: 147 FTLKKGLQTSFKPNFPCILKPVRLGSSIGISIANNEEE--LNYSKDVGFEFDDTLLVEDF 204

Query: 172 VDGIE---LTCGVMGDASLDVTEIAVP-KSDFYSYELKYSSLNS-THVLPAKIPLDIYKE 226
              I+   L   ++GD  L  + I  P K +F  +E KY S +  + ++ A +  ++ ++
Sbjct: 205 KKDIKEYNLAGCMIGD-ELIFSIIEEPKKKEFLDFEQKYLSFSGHSELIEADLSEELKEK 263

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279
           ++      +  +    + R DF    L  +V+  EIN  PG     +F +  +
Sbjct: 264 LKESFSKIYNPLFKGALIRCDFFI--LDNEVYLNEINSNPGSLANYLFKDFNS 314


>gi|24215399|ref|NP_712880.1| D-alanine--D-alanine ligase [Leptospira interrogans serovar Lai
           str. 56601]
 gi|45657184|ref|YP_001270.1| d-alanine--d-alanine ligase [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|24196516|gb|AAN49898.1|AE011436_13 D-alanine--D-alanine ligase [Leptospira interrogans serovar Lai
           str. 56601]
 gi|45600422|gb|AAS69907.1| d-alanine--d-alanine ligase [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
          Length = 374

 Score = 66.6 bits (161), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 69/266 (25%), Positives = 119/266 (44%), Gaps = 44/266 (16%)

Query: 50  KPDLAFNVLHG--NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV 107
           K  + F+++ G  +   + L+ A+ EL   P+T S   +  +S+DK  ++    S GVPV
Sbjct: 72  KRPVIFHLMEGFCSRNRESLIPAVAELFGFPHTGSDSYSQNVSLDKNLTRIFAQSIGVPV 131

Query: 108 --------------------CPSILVNRFTMDSQHLI-----SPPYVIKPLKGGSSLGI- 141
                               C S +  RF+    + +     S P  IKP   GSSLGI 
Sbjct: 132 ASGFWIRSKDVLFKELLQLECNSEIKKRFSFSKGNELNLKNFSFPAFIKPAGEGSSLGIG 191

Query: 142 ---IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA----V 194
              I+   ++   L+ L S +       L+E+Y+ G E T  V+G A+      +    +
Sbjct: 192 EKNIIYSFEE---LNTLLSEAPEIFFPYLLEEYLTGNEYTISVIGSATFGYKVSSAGRLI 248

Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE----VQRLAFLAHQAIGCRGISRSDFLF 250
            + D    ++      S  ++P  +  D  K+    +Q+ + L  +++G  G +R D+  
Sbjct: 249 LREDLKVEDVYGEKTKSKSIMPETLVFDCPKDLEVIIQQQSVLFCESLGTSGPARLDWKL 308

Query: 251 DPLSRKVFWLEINVQPGMTPV-SIFP 275
           D L    F+LE+N+ PG++P  S FP
Sbjct: 309 DSLGNP-FFLEMNLTPGLSPFYSTFP 333


>gi|168699143|ref|ZP_02731420.1| D-ala D-ala ligase domain protein [Gemmata obscuriglobus UQM 2246]
          Length = 355

 Score = 66.6 bits (161), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 71/309 (22%), Positives = 138/309 (44%), Gaps = 32/309 (10%)

Query: 9   SSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---PDLAFNVLHGNFGED 65
           +SE ++  + G A    L  AGF  +++ ++     +L  LK   P   FN+  G   + 
Sbjct: 23  NSEHDIYDTVGDAY-KVLVAAGFVTTKLGINHDPQPLLDALKRDRPAAVFNLFEGIATQT 81

Query: 66  GL---VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
                  A+LE L +P+T     A AL  DK+R+K V+++ GVP    ++V+   + +  
Sbjct: 82  STEVSAAALLEWLNVPFTGCPAAALALGRDKVRTKHVLAASGVPTPDYLIVDTLPVPTW- 140

Query: 123 LISPPYVIKPLKGGSSLGI---IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
               P ++KP    +S+GI    V+   + +   +  + +  +G   ++E+Y+ G EL  
Sbjct: 141 CHGWPAIVKPAYQDASVGIEQSSVVTSQEQLQAQVAHTLA-TYGPPAIVERYIKGRELHV 199

Query: 180 GVM-------GD-ASLDVTEIAVPKSD-----FYSYELKYSSLNSTH-----VLPAKIPL 221
            V+       G+  +L  TEIA  K +      Y++  K+   +  +       P  +P 
Sbjct: 200 NVIEPFGATGGEPVALAPTEIAFQKDEPGRWAVYTFAAKWHEQSDEYKAASLKFPVDLPA 259

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYA 281
             +  + ++   + + +GCR  +R D   D        LE+N  P +  +++   + A  
Sbjct: 260 ADFARLAQIVQRSFRVVGCRDYARVDVRMD-AGGAFHVLEVNPNPYLNSITLVDGLKAR- 317

Query: 282 GYSFRELLL 290
           G S+   ++
Sbjct: 318 GSSYERFVV 326


>gi|256752676|ref|ZP_05493527.1| D-alanine--D-alanine ligase [Thermoanaerobacter ethanolicus CCSD1]
 gi|256748438|gb|EEU61491.1| D-alanine--D-alanine ligase [Thermoanaerobacter ethanolicus CCSD1]
          Length = 259

 Score = 66.2 bits (160), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 60/239 (25%), Positives = 111/239 (46%), Gaps = 19/239 (7%)

Query: 70  AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV-NRFTMDSQHLISPPY 128
           A LE+  IPY  SG+    ++ DK   K +V+S G+P    ++  N   + S   +  P 
Sbjct: 14  AFLEVFNIPYVGSGL--DVVATDKRMRKDIVASHGLPTPKYVIAENPQEIPSVDHLKFPL 71

Query: 129 VIKPLKGGSSLGI----IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
            +KP+ G  S GI    I+  KD+ +P  ++   +   G   LIE++++G E+T G++G 
Sbjct: 72  FVKPISGRGSAGIDEENIIYDKDK-LP-QVVSKITEKIGQAALIEEFIEGKEVTVGIIGY 129

Query: 185 AS---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241
                L + E+        +YE K    N     P ++P ++ ++++  A   ++ +  +
Sbjct: 130 KHPQVLPLLEVGYNNVKTNTYEHKMFD-NEIIKCPIEVPKEVEEKIKETALNIYKVLNAK 188

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
             +R D +        ++LE+N   G+T  S   E   + GY     + +M + A   R
Sbjct: 189 DFARIDMILSK-DNVPYFLELNTFAGLTMSSSKGEKHVHHGY-----MGYMAKAAGLTR 241


>gi|229662029|gb|ACQ84447.1| vancomycin resistance protein B [Enterococcus faecalis]
          Length = 160

 Score = 66.2 bits (160), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 40/125 (32%), Positives = 66/125 (52%), Gaps = 2/125 (1%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+AF VLHG  GEDG +Q +  L  IPY    I +SA+ MDK  +  +  + G+ V    
Sbjct: 38  DVAFPVLHGKCGEDGAIQGLFVLSGIPYVGCDIQSSAVCMDKSLAYILTKNAGIAVPEFQ 97

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
           ++++        ++ P  +KP + GSS G  V K + +  L+    ++  +  ++LIEQ 
Sbjct: 98  MIDKGDKPEAGALTYPVFVKPARLGSSFG--VTKVNGTEELNAAIEAAGQYDGKILIEQA 155

Query: 172 VDGIE 176
           + G E
Sbjct: 156 ISGCE 160


>gi|88812924|ref|ZP_01128168.1| hypothetical protein NB231_00250 [Nitrococcus mobilis Nb-231]
 gi|88789846|gb|EAR20969.1| hypothetical protein NB231_00250 [Nitrococcus mobilis Nb-231]
          Length = 348

 Score = 66.2 bits (160), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 81/309 (26%), Positives = 131/309 (42%), Gaps = 36/309 (11%)

Query: 8   ISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGL 67
             +E + ++   K   +ALE  GF  + +D   ++   L    P LAFN+    F  D  
Sbjct: 31  FGAEEQNAVEQLKTALAALE--GFTFTYLDDHTTLLDDLRQRPPSLAFNLCDVGFRNDTA 88

Query: 68  ----VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
               + A+LE+L I Y+ +  +  +L+ DK   + V  S G+PV   + V+   + +  L
Sbjct: 89  RELNIPALLEILNISYSGADPVGMSLATDKSIVRVVARSLGIPVPNEMFVD---LGADPL 145

Query: 124 ISP---PYVIKPLKGGSSLGIIV--IKKDQSIPLDLLQSSSWNHGD----QLLIEQYVDG 174
           + P   P +IKP     S GI    +  D +     L    W  G+    + LI+ ++ G
Sbjct: 146 VLPALYPALIKPNFSDGSFGITADCVAHDAAEAERYLH---WLAGELERPEALIQDFLTG 202

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYE------LKYSSL---NSTHVLPAKIPLDIYK 225
            E T G++G+AS   T +   + D+   +      L Y+S    +S +    +       
Sbjct: 203 TEYTVGLIGNASQGFTYLPPLEVDYSRLDPELPPILSYASKADPDSPYWQKLRFRRARID 262

Query: 226 EVQR-----LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280
           EV R        L  + +G R   R DF           LE+N  P          MA+Y
Sbjct: 263 EVTRGRLYEYCTLLFKRLGLRDYGRFDFRAGADGEPRL-LEVNHNPAWAWDGKLSLMASY 321

Query: 281 AGYSFRELL 289
           AGYS+ +LL
Sbjct: 322 AGYSYSDLL 330


>gi|480501|pir||S36974 hypothetical protein 8 (atpB 5' region) - Synechococcus sp.  (PCC
           6716) (fragment)
 gi|49229|emb|CAA49884.1| unnamed protein product [Synechococcus sp.]
          Length = 218

 Score = 66.2 bits (160), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 42/138 (30%), Positives = 70/138 (50%), Gaps = 14/138 (10%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+ F +LHG  GEDG +Q +LE+++ PY  SG+ ASA+ MDK+  K    + G+P    +
Sbjct: 82  DVWFPILHGPNGEDGTIQGLLEMMQRPYVGSGVAASAIGMDKILMKTFFGAVGLPQVQYV 141

Query: 112 LVNRFTMDS------------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
            ++R  + S            +  +  P  +KP   GSS+GI   K  Q +   L  ++ 
Sbjct: 142 AISRSELWSDPCRYRQVCDRIETELGYPCFVKPANLGSSVGISKAKNRQQLTTALETAAE 201

Query: 160 WNHGDQLLIEQYVDGIEL 177
            +   ++++E  V   EL
Sbjct: 202 LDR--RIIVEAGVVAREL 217


>gi|115474235|ref|NP_001060716.1| Os07g0691200 [Oryza sativa Japonica Group]
 gi|33146883|dbj|BAC79881.1| unknown protein [Oryza sativa Japonica Group]
 gi|50509294|dbj|BAD30601.1| unknown protein [Oryza sativa Japonica Group]
 gi|113612252|dbj|BAF22630.1| Os07g0691200 [Oryza sativa Japonica Group]
 gi|222637729|gb|EEE67861.1| hypothetical protein OsJ_25672 [Oryza sativa Japonica Group]
          Length = 946

 Score = 66.2 bits (160), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 65/296 (21%), Positives = 123/296 (41%), Gaps = 48/296 (16%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+ F V+HG FGEDG +Q +LE   +P+  +      L+ DK  +   +++ G    P+ 
Sbjct: 160 DIVFPVIHGKFGEDGGIQELLEKANVPFVGTPSKNCLLAFDKYNASLELNAQGFLTVPNF 219

Query: 112 LVNRFTMDSQHL-----------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160
           LV +  +    L            +   V+KP   GSS+G++V               S 
Sbjct: 220 LVEKDKLAKSKLEEWFQSINLDKENGKVVVKPTSAGSSIGVVVAYGANDAAEKAEGIISE 279

Query: 161 NHGDQLLIEQYVD-GIELTCGVMGDASLDVTE----------------IAVPKSDFYSYE 203
              D+++IE +++ G E T  V+   + + +E                I + +   ++Y 
Sbjct: 280 GIDDKVIIEVFLEGGTEFTAIVVDVGTANNSEPVVLLPTEVELQSSSNIDIQEDTIFNYR 339

Query: 204 LKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD--FLFDPLSR----- 255
            KY  +    +  P + P ++   +++   +  + +G R  +R D  FL  P++      
Sbjct: 340 RKYLPTRQVAYHTPPRFPSEVIDCIRQGVSILFRCLGLRDFARIDGWFLPTPVTSLPSAE 399

Query: 256 -----------KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
                       V + +IN+  GM   S   + ++  G+S   +L  +V+ A C R
Sbjct: 400 NTGKFGNTKYGAVLFTDINLMTGMEQTSFLFQQSSKVGFSHSRILRTVVQHA-CSR 454



 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 82/342 (23%), Positives = 134/342 (39%), Gaps = 87/342 (25%)

Query: 29  AGFKVS-QIDVDRSVGLVLAHLKPDLA--FNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
           AGF ++ +  +  S+   + H+K   A  F  +HG  GEDG +Q++L    +PYT  G +
Sbjct: 603 AGFDIADKQPIKYSLQQWINHVKEAQAVVFIAVHGGIGEDGTIQSLLGSAGVPYTGPGQI 662

Query: 86  ASALSMDKMRSKQVVS---SCGVPVCPSILVNRFTMD-------------SQHLISPPYV 129
           AS   MDK+ +   VS   S GV   P  L  R T +                L +    
Sbjct: 663 ASRTCMDKVATSLAVSHLASYGVHTIPKDL--RATEEILKSSPDDIWNDLKAKLQTETVC 720

Query: 130 IKPLKGGSSLGIIVI--------------KKDQSIPLDLLQSSSWNHG---------DQL 166
           +KP + G S G+  +              +K Q +P + L   S  HG         + L
Sbjct: 721 VKPARDGCSTGVARLCCPKDLEVYANALERKLQRMPANCL---SRAHGVIEMPVSPPESL 777

Query: 167 LIEQYVDG-------------------------IELTCGVMGDA----SLDVTEIAVPKS 197
           + E +++                          +E+T GV+G      SL+ +       
Sbjct: 778 IFEPFIETDEIIISTKSVDDSTRHLVWKGENKWLEVTVGVVGKRGEMLSLNPSITVKESG 837

Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR----LAFLAHQAIGCRGISRSDFLFDPL 253
           D  S E K+      ++ P    +   + +Q+    +  LA+  +G  G SR D   +  
Sbjct: 838 DILSLEEKFQGGTGINLTPPPSTIMSEEALQKCKSCIETLAN-TLGLEGFSRIDAFVNVQ 896

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMA------AYAGYSFRELL 289
           + ++  +E+N  PGMTP ++    A       Y    FR LL
Sbjct: 897 NGEILLIEVNTVPGMTPSTVLIHQALTEKPPIYPHKFFRTLL 938


>gi|218200303|gb|EEC82730.1| hypothetical protein OsI_27428 [Oryza sativa Indica Group]
          Length = 946

 Score = 65.9 bits (159), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 65/296 (21%), Positives = 123/296 (41%), Gaps = 48/296 (16%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+ F V+HG FGEDG +Q +LE   +P+  +      L+ DK  +   +++ G    P+ 
Sbjct: 160 DIVFPVIHGKFGEDGGIQELLEKANVPFVGTPSKNCLLAFDKYNASLELNAQGFLTVPNF 219

Query: 112 LVNRFTMDSQHL-----------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160
           LV +  +    L            +   V+KP   GSS+G++V               S 
Sbjct: 220 LVEKDKLAKSKLEEWFQSINLDKENGKVVVKPTSAGSSIGVVVAYGANDAAEKAEGIISE 279

Query: 161 NHGDQLLIEQYVD-GIELTCGVMGDASLDVTE----------------IAVPKSDFYSYE 203
              D+++IE +++ G E T  V+   + + +E                I + +   ++Y 
Sbjct: 280 GIDDKVIIEVFLEGGTEFTAIVVDVGTANNSEPVVLLPTEVELQSSSNIDIQEDTIFNYR 339

Query: 204 LKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD--FLFDPLSR----- 255
            KY  +    +  P + P ++   +++   +  + +G R  +R D  FL  P++      
Sbjct: 340 RKYLPTRQVAYHTPPRFPSEVIDCIRQGVSILFRCLGLRDFARIDGWFLPTPVTSLPSAE 399

Query: 256 -----------KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
                       V + +IN+  GM   S   + ++  G+S   +L  +V+ A C R
Sbjct: 400 NTGKFGNTKYGAVLFTDINLMTGMEQTSFLFQQSSKVGFSHSRILRTVVQHA-CSR 454



 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 81/342 (23%), Positives = 134/342 (39%), Gaps = 87/342 (25%)

Query: 29  AGFKVS-QIDVDRSVGLVLAHLKPDLA--FNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
           AGF ++ +  +  S+   + H+K   A  F  +HG  GEDG +Q++L    +PYT  G +
Sbjct: 603 AGFDIADKQPIKYSLQQWINHVKEAQAVVFIAVHGGIGEDGTIQSLLGSAGVPYTGPGQI 662

Query: 86  ASALSMDKMRSKQVVS---SCGVPVCPSILVNRFTMD-------------SQHLISPPYV 129
           AS   MDK+ +   VS   S GV   P  L  R T +                L +    
Sbjct: 663 ASRTCMDKVATSLAVSHLASYGVHTIPKDL--RATEEILKSSPDDIWNDLKAKLQTETVC 720

Query: 130 IKPLKGGSSLGIIVI--------------KKDQSIPLDLLQSSSWNHG---------DQL 166
           +KP + G S G+  +              +K Q +P + L  +   HG         + L
Sbjct: 721 VKPARDGCSTGVARLCCPKDLEVYANALERKLQRMPANCLSRA---HGVIEMPVSPPESL 777

Query: 167 LIEQYVDG-------------------------IELTCGVMGDA----SLDVTEIAVPKS 197
           + E +++                          +E+T GV+G      SL+ +       
Sbjct: 778 IFEPFIETDEIIISTKSVDDSTRHLVWKGENKWLEVTVGVVGKRGEMLSLNPSITVKESG 837

Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR----LAFLAHQAIGCRGISRSDFLFDPL 253
           D  S E K+      ++ P    +   + +Q+    +  LA+  +G  G SR D   +  
Sbjct: 838 DILSLEEKFQGGTGINLTPPPSTIMSEEALQKCKSCIETLAN-TLGLEGFSRIDAFVNVQ 896

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMA------AYAGYSFRELL 289
           + ++  +E+N  PGMTP ++    A       Y    FR LL
Sbjct: 897 NGEILLIEVNTVPGMTPSTVLIHQALTEKPPIYPHKFFRTLL 938


>gi|167038556|ref|YP_001666134.1| D-alanine--D-alanine ligase [Thermoanaerobacter pseudethanolicus
           ATCC 33223]
 gi|320116951|ref|YP_004187110.1| D-alanine--D-alanine ligase [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
 gi|166857390|gb|ABY95798.1| D-alanine--D-alanine ligase [Thermoanaerobacter pseudethanolicus
           ATCC 33223]
 gi|319930042|gb|ADV80727.1| D-alanine--D-alanine ligase [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
          Length = 325

 Score = 65.9 bits (159), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 59/224 (26%), Positives = 108/224 (48%), Gaps = 18/224 (8%)

Query: 70  AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV-NRFTMDSQHLISPPY 128
           A LE+  IPY  SG+    ++ DK   K +V+S G+P    ++  N   + S   +  P 
Sbjct: 80  AFLEVFNIPYVGSGL--DVVATDKRMRKDIVASHGLPTPKYVIAENPQEIPSVDHLKFPL 137

Query: 129 VIKPLKGGSSLGI----IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
            +KP+ G  S GI    I+  KD+ +P  ++   +   G   LIE++++G E+T G++G 
Sbjct: 138 FVKPISGRGSAGIDEENIIYDKDK-LP-QVVSKITEKIGQAALIEEFIEGKEVTVGIIGY 195

Query: 185 AS---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241
                L + E+        +YE K    N     P ++P ++ ++++  A   ++ +  +
Sbjct: 196 KHPQVLPLLEVGYNNVKTNTYEHKMFD-NEIIKCPIEVPKEVEEKIKETALNIYKVLNAK 254

Query: 242 GISRSDFLFDPLSRKV--FWLEINVQPGMTPVSIFPEMAAYAGY 283
             +R D +   LS+    ++LE+N   G+T  S   E   + GY
Sbjct: 255 DFARIDMI---LSKDNVPYFLELNTFAGLTMSSSKGEKHVHHGY 295


>gi|289524161|ref|ZP_06441015.1| putative D-ala D-ala ligase domain protein [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
 gi|289502817|gb|EFD23981.1| putative D-ala D-ala ligase domain protein [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
          Length = 344

 Score = 65.9 bits (159), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 73/309 (23%), Positives = 142/309 (45%), Gaps = 34/309 (11%)

Query: 15  SLSSGKACASALEDAGFK-----VSQIDVDRSVGLVLAHLK---PDLAFNVLHGNFGEDG 66
           +L+     A AL   G K     V++ D+ RS  ++   +K   PD  FN+  G F +D 
Sbjct: 20  TLTVRDMVAKALASVGHKTYVLGVTKKDL-RSFDVLENKIKRFWPDCIFNLFEG-FSDDS 77

Query: 67  ----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
               L    LE L IP+T +G  A   S+DK+ +K++++   VP    + +   + D + 
Sbjct: 78  KKEVLFATFLESLNIPFTGNGSAALQASLDKLMAKKLLTKKNVPAPKGLCLESTSFDLEG 137

Query: 123 LISPPYVIKPLKGGSSLGI----IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           L  P + IKP     S+GI    +V  K Q       +  ++  G  +++E++++G E  
Sbjct: 138 LPCPAF-IKPRFEDGSVGIDDSSLVTSKSQLKEAVARKILTFPAG--IIVEEFLEGREFN 194

Query: 179 CGVMGDASLDVTEIAV------PKS-DFYSYELKYSSLNSTHVL----PAKIPLDIYKEV 227
            G++G    +V  I++      P++  F  Y  K+ + +  + +    P  +P ++   +
Sbjct: 195 VGLIGLPPYEVAGISMIDYEDYPEALPFLDYGAKWDTKSPGYRIAPENPKFLPREMKDSL 254

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287
            R+A  A  A+ C+G  R D        +++ +++N  P +   S        +G  +  
Sbjct: 255 IRMAKRAGIALSCKGYFRVDMR--ERDGEIYVIDVNPNPDLNVESGLANQCRRSGLPYEA 312

Query: 288 LLLWMVEDA 296
           L+ ++++ A
Sbjct: 313 LISYIIDTA 321


>gi|167040420|ref|YP_001663405.1| D-alanine--D-alanine ligase [Thermoanaerobacter sp. X514]
 gi|300913706|ref|ZP_07131023.1| D-alanine--D-alanine ligase [Thermoanaerobacter sp. X561]
 gi|307723279|ref|YP_003903030.1| D-alanine--D-alanine ligase [Thermoanaerobacter sp. X513]
 gi|166854660|gb|ABY93069.1| D-alanine--D-alanine ligase [Thermoanaerobacter sp. X514]
 gi|300890391|gb|EFK85536.1| D-alanine--D-alanine ligase [Thermoanaerobacter sp. X561]
 gi|307580340|gb|ADN53739.1| D-alanine--D-alanine ligase [Thermoanaerobacter sp. X513]
          Length = 325

 Score = 65.9 bits (159), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 57/222 (25%), Positives = 105/222 (47%), Gaps = 14/222 (6%)

Query: 70  AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV-NRFTMDSQHLISPPY 128
           A LE+  IPY  SG+    ++ DK   K +V+S G+P    ++  N   + S   +  P 
Sbjct: 80  AFLEVFNIPYVGSGL--DVVATDKRMRKDIVASHGLPTPKYVIAENPQEIPSVDHLKFPL 137

Query: 129 VIKPLKGGSSLGI----IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
            +KP+ G  S GI    I+  KD+ +P  ++   +   G   LIE++++G E+T G++G 
Sbjct: 138 FVKPISGRGSAGIDEENIIYDKDK-LP-QVVSKITEKIGQAALIEEFIEGKEVTVGIIGY 195

Query: 185 AS---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241
                L + E+        +YE K    N     P ++P ++ ++++  A   ++ +  +
Sbjct: 196 KHPQVLPLLEVGYNNVKTNTYEHKMFD-NEIIKCPIEVPKEVEEKIKETALNIYKVLNAK 254

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283
             +R D +        ++LE+N   G+T  S   E   + GY
Sbjct: 255 DFARIDMILSK-DNVPYFLELNTFAGLTMSSSKGEKHVHHGY 295


>gi|315453894|ref|YP_004074164.1| putative D-alanine--D-alanine ligase [Helicobacter felis ATCC
           49179]
 gi|315132946|emb|CBY83574.1| putative D-alanine--D-alanine ligase [Helicobacter felis ATCC
           49179]
          Length = 344

 Score = 65.5 bits (158), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 55/217 (25%), Positives = 97/217 (44%), Gaps = 9/217 (4%)

Query: 56  NVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR 115
           N++HG  GEDG + ++LE   +P+    + A  +SM+K  +K      GV V P + ++ 
Sbjct: 93  NLVHGGDGEDGKLASMLEFFNLPFIGPRVEACTVSMNKYFTKMFAKERGVKVLPYVFLDS 152

Query: 116 FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175
               +   +  P + KP   GSS+GI VI + + +   L +   ++   Q ++E +  G+
Sbjct: 153 HDNSALENLDYPLIAKPNHLGSSIGISVIHEPKDVAYGLDEVFEFD--SQAIVEPFKAGV 210

Query: 176 ELT--CGVMG-DASLDVTEIAVP-KSDFYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRL 230
           +     G MG D     + I  P K +   +E KY     T  +  A I   +  ++Q  
Sbjct: 211 KEYNLAGCMGQDGEFIFSMIEEPTKKELLGFEEKYLDFGRTQTISKANISPHLELQMQNA 270

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPG 267
               +       + R DF    +  +++  EIN  PG
Sbjct: 271 FKKLYDPFFIGALIRCDFFV--IDNEIYLNEINPIPG 305


>gi|297620263|ref|YP_003708400.1| hypothetical protein wcw_0017 [Waddlia chondrophila WSU 86-1044]
 gi|297375564|gb|ADI37394.1| conserved hypothetical protein [Waddlia chondrophila WSU 86-1044]
          Length = 642

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 72/282 (25%), Positives = 126/282 (44%), Gaps = 25/282 (8%)

Query: 30  GFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGIL 85
            F+ S  D  +++    +   P    N+    +  D  ++    A++E+L+IPYT +G  
Sbjct: 331 NFQFSCFDDHKNLIRKFSQNPPPFVMNLCDEGWNNDPFMELHPTALMEMLKIPYTGAGPE 390

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGI---- 141
             ++  +K   + +  S  V V   I ++     +      P +IKP  G SS+GI    
Sbjct: 391 CLSICYNKSTVRAIAQSMDVHVPSEIWIDPSNHSAAIPSIFPALIKPAYGDSSIGITQNA 450

Query: 142 IVIKKDQSIP-LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA-SLDVTEI------A 193
           +V   ++ +   D L++   N    +LI++++DG E + GV+G+  SL+V  I       
Sbjct: 451 VVYSAEELVTYFDNLKAQMPNI--PILIQEFLDGREFSVGVIGNGVSLEVLPILEVDYSG 508

Query: 194 VPKS--DFYSYELKY--SSLNSTHVLPAKIPLD--IYKEVQRLAFLAHQAIGCRGISRSD 247
           +P++      YE K+   S   TH+   +  LD  + +++   +    Q + CR  +R D
Sbjct: 509 LPENLPKILGYESKWHPESPYCTHIRYHQAHLDESLARDLIDTSINLFQRLKCRDYARFD 568

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           F  D        LE N  PG         MA +AG  + ELL
Sbjct: 569 FRMDSQGEAKL-LEANPNPGWCWDGKMALMAEFAGIQYHELL 609


>gi|57167797|ref|ZP_00366937.1| D-alanine--D-alanine ligase [Campylobacter coli RM2228]
 gi|57020919|gb|EAL57583.1| D-alanine--D-alanine ligase [Campylobacter coli RM2228]
          Length = 346

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 57/234 (24%), Positives = 105/234 (44%), Gaps = 9/234 (3%)

Query: 48  HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV 107
           +L  D   N++HG  GEDG + ++LE  +I +    + AS LS +K  +K    S GV  
Sbjct: 84  NLNLDCVINLIHGRDGEDGKIASLLEFFDIKFIGPRVEASVLSFNKEFTKLYAQSVGVKT 143

Query: 108 CPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL 167
               ++ R +         P ++KP + GSS+GI + K ++   LD  +   +     +L
Sbjct: 144 LDYQML-RKSQKQDFTAHFPCILKPARLGSSIGISIAKNEKE--LDYAKDVGFEFDTDIL 200

Query: 168 IEQYVDGIELT--CGVMGDASLDVTEIAVP-KSDFYSYELKYSSLNS-THVLPAKIPLDI 223
           +E +   I+     G M       + I  P K +F  ++ KY S +    ++ A +  ++
Sbjct: 201 VEDFKSNIKEYNLAGCMIKDEFIFSIIEEPRKKEFLDFKQKYLSFSGHNELIEADLSEEL 260

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
            ++++      +  +    + R DF    L  +V+  EIN  PG     +F + 
Sbjct: 261 KQKLKDNFAKIYNPLFKGALIRCDFFI--LDNEVYLNEINPNPGSLANYLFKDF 312


>gi|307352683|ref|YP_003893734.1| type 11 methyltransferase [Methanoplanus petrolearius DSM 11571]
 gi|307155916|gb|ADN35296.1| Methyltransferase type 11 [Methanoplanus petrolearius DSM 11571]
          Length = 635

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 72/266 (27%), Positives = 115/266 (43%), Gaps = 31/266 (11%)

Query: 50  KPDLAFNVLHGNFGEDGL----VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV 105
           K D  FN+    F  D      V A LE+L IPYT       A   DK   + +     +
Sbjct: 358 KADFIFNLCDEGFLNDPRKELHVPAALEILSIPYTGGNPQCLAYCYDKSLVRGIAKELDI 417

Query: 106 PVCPSILVNRFTMDSQHLISP---PYVIKPLKGGSSLGII--VIKKDQSIPLDL---LQS 157
           PV  + ++N    DS  +  P   P ++KP  G SS GI    + +D S   D    L+S
Sbjct: 418 PVPRAFVIN--PEDSSFIEFPIHFPVIVKPNFGDSSFGITQNSVCRDISELQDAILRLKS 475

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYS----------YELKYS 207
            S + G  +L+E+++ G +++ G++G+       + V + D+ S          YE K+ 
Sbjct: 476 FSGDCG-TVLVEEFLTGGDISVGIIGNLPDKYEVLPVIEEDYSSLPRGYPKICGYEAKWD 534

Query: 208 SLNSTHVLPAKIPLDIYKEVQRLAFLA----HQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
              S +     IP D+ +E +R    +       +GCR  +R D+  D        LE+N
Sbjct: 535 P-ESPYAGITSIPADLSEEARRFLVASCLKLFGRLGCRDYARFDWRIDSNGTPRL-LEVN 592

Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELL 289
             PG        +MA  A  ++ E+L
Sbjct: 593 PNPGWCWDGHLAKMAGIAEITYAEML 618


>gi|134081480|emb|CAK46493.1| unnamed protein product [Aspergillus niger]
          Length = 335

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 86/305 (28%), Positives = 137/305 (44%), Gaps = 51/305 (16%)

Query: 23  ASALEDAGFKVSQIDVDRSVGLVLAHLKP---DLAFNVLHGNFG--EDGLVQAILELLEI 77
           A+AL++ G +V  +    S+   LAH +    DLAFN   G  G   +G V A+LE  +I
Sbjct: 41  AAALKNLGHEVVLVPDIHSLVKRLAHGEGSTWDLAFNTTEGLHGLAREGQVPALLEAYQI 100

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP-PYVIKPLKGG 136
           P+T S      L +DK R+K       V +   + + R +  S+ L+S  P  +KPL  G
Sbjct: 101 PFTFSDAATMTLCLDKGRTK-------VSLDEILSMIRMSRHSETLLSQYPLFVKPLAEG 153

Query: 137 SSLGIIVIKKDQSIP--LDLLQSSSWNHGDQL--LIEQYVDGIELTCGVMGDASLDVTEI 192
           SS GI    K +SI    D++ S   +    L  L+E+Y+ G E T G++G    D   +
Sbjct: 154 SSKGIGATNKIKSIESLCDVVNSLRDSSPSSLGVLVEKYLPGREFTVGILGTGE-DAWVV 212

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY----KEVQ------------RLAFLAHQ 236
            V +         Y +  S  +L    P D +     E++            + A  A  
Sbjct: 213 GVDEI--------YGAAKSRRIL---TPTDDWAGEADEIKIGWDDQEADLACQTALRAWT 261

Query: 237 AIGCRGISRSDFLFD----PLSRKVFWLEINVQPGMTP-VSIFPEMAAYAGYSFRELLLW 291
            + CR   R D   D    P++  V  ++IN   G+ P  S  P +A +   S+ EL+ +
Sbjct: 262 VLRCRDGGRIDIRMDHSGSPVAH-VMEIQINPLAGLLPHWSQLPMIAEHNNVSYNELIEY 320

Query: 292 MVEDA 296
           +++ A
Sbjct: 321 ILKSA 325


>gi|300088096|ref|YP_003758618.1| D-alanine--D-alanine ligase [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
 gi|299527829|gb|ADJ26297.1| D-alanine--D-alanine ligase [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
          Length = 330

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 66/268 (24%), Positives = 114/268 (42%), Gaps = 40/268 (14%)

Query: 55  FNVLHGNFGEDGLVQAILELLE---IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           FN+  G  G      A+   LE   +P+T     + AL++DK  +  V+   G+      
Sbjct: 69  FNLFEGFAGRPETEAAVARALENTGLPFTGCPASSLALTLDKPATHLVLGYAGLATPRFQ 128

Query: 112 LVN-----RFTMDSQHLISPP-----YVIKP---LKGGSSLGIIVIKKDQSIPLDLLQSS 158
           L++      F +D   ++ PP     + + P     G   L I + +  +  P       
Sbjct: 129 LLDPADTADFDLDFPCIVKPPADDASHALSPESVAAGREELAIALNRIAKRYP------- 181

Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDAS---LDVTEI------AVPKSDFYSYELKYSSL 209
                   L+E++++G E    V+G+ S   L V+EI        P+   ++ +    S 
Sbjct: 182 ----DSPALVEEFLNGREFNVTVLGNNSPRLLAVSEIIYTLPTGCPRLLTFAAKWSPDSA 237

Query: 210 NSTHV---LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
              H     PA +   +  E++  A  A +A GCRG +R DF  +   R V  LE+N  P
Sbjct: 238 YYRHTAVRCPAVLDNSLAAELEHAALTAFRATGCRGYARMDFRLNAAGRPVI-LEVNANP 296

Query: 267 GMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            ++P +     A  AG ++REL+  +V+
Sbjct: 297 DLSPEAGVARQAEAAGMTYRELIDAIVK 324


>gi|224419173|ref|ZP_03657179.1| D-alanyl-alanine synthetase A [Helicobacter canadensis MIT 98-5491]
 gi|253828106|ref|ZP_04870991.1| D-alanine--D-alanine ligase [Helicobacter canadensis MIT 98-5491]
 gi|313142679|ref|ZP_07804872.1| ligase [Helicobacter canadensis MIT 98-5491]
 gi|253511512|gb|EES90171.1| D-alanine--D-alanine ligase [Helicobacter canadensis MIT 98-5491]
 gi|313131710|gb|EFR49327.1| ligase [Helicobacter canadensis MIT 98-5491]
          Length = 345

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 59/218 (27%), Positives = 102/218 (46%), Gaps = 13/218 (5%)

Query: 56  NVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR 115
           N++HG  GEDG V ++L+   I Y      A  LS DK  +K +   CGV      +V++
Sbjct: 92  NLIHGADGEDGRVASLLDFYGINYIGPRNPACVLSFDKELTKMLAKECGVLSLDYQMVHK 151

Query: 116 FTMDSQHLISPPY--VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
              DS   ++ P+  ++KP + GSS+GI V+ +++   L+     ++ + D+ +IE +V 
Sbjct: 152 ---DSIPKVTLPFPLIVKPARLGSSIGISVVYEEKE--LEYAIQEAFEYDDKAIIEPFVS 206

Query: 174 GIEL--TCGVMGDASLDVTEIAVP-KSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQR 229
           GI+     G      +  + I  P K +F  +E KY   + T     A+I   + + +Q 
Sbjct: 207 GIKEYNIAGYKSKEGMHFSFIEEPQKKEFLDFEKKYLDFSRTESAKEAEISESLKQTLQE 266

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPG 267
                +  +    + R DF       + +  EIN  PG
Sbjct: 267 NFTKIYGNLFDGALIRCDFFVK--ENQCYLNEINPIPG 302


>gi|21360658|gb|AAM49643.1| D-alanine:D-alanine ligase [Enterococcus faecium]
 gi|21360660|gb|AAM49644.1| D-alanine:D-alanine ligase [Enterococcus faecium]
 gi|21360662|gb|AAM49645.1| D-alanine:D-alanine ligase [Enterococcus faecium]
 gi|21360664|gb|AAM49646.1| D-alanine:D-alanine ligase [Enterococcus faecium]
 gi|21360666|gb|AAM49647.1| D-alanine:D-alanine ligase [Enterococcus faecium]
 gi|21360668|gb|AAM49648.1| D-alanine:D-alanine ligase [Enterococcus faecium]
 gi|21360670|gb|AAM49649.1| D-alanine:D-alanine ligase [Enterococcus faecium]
 gi|21360672|gb|AAM49650.1| D-alanine:D-alanine ligase [Enterococcus faecium]
 gi|21360674|gb|AAM49651.1| D-alanine:D-alanine ligase [Enterococcus faecium]
          Length = 155

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 80/157 (50%), Gaps = 15/157 (9%)

Query: 85  LASALSMDKMRSKQVVSSCGVPVCP--SILVNRFTMDSQHLISP-------PYVIKPLKG 135
           L SA +MDK+ +K ++ + GVP  P   +L N++  + + +          P  +KP   
Sbjct: 1   LTSACAMDKIMTKYILQAAGVPQVPYVPVLKNQWKENPKKVFDQCEGSLLYPMFVKPANM 60

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EI 192
           GSS+GI   K +    L    ++++ +  + ++EQ ++  E+   V+G+  +  T   E+
Sbjct: 61  GSSVGIT--KAENREELQNALATAYQYDSRAIVEQGIEAREIEVAVLGNEDVRTTLPGEV 118

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
            V    FY YE KY +      +PA++P ++Y++ Q 
Sbjct: 119 -VKDVAFYDYEAKYINNKIEMQIPAEVPEEVYQKAQE 154


>gi|268323538|emb|CBH37126.1| conserved hypothetical protein [uncultured archaeon]
          Length = 720

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 64/255 (25%), Positives = 112/255 (43%), Gaps = 15/255 (5%)

Query: 53  LAFNVLHGNFGEDGLVQ--AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
           + FN+ +G  GE       A+LE+L IPY  SG    +L++DK+ +K ++    +   P+
Sbjct: 73  MVFNMAYGIQGESRYTHLPAMLEMLGIPYVGSGPEGHSLALDKVITKILMQKQSIS-TPN 131

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW---NHGDQLL 167
             V     +    +  P ++KP     S GI ++  +     DL  +  +       Q L
Sbjct: 132 FWVYSSGDEDMSDVQYPVIVKPKMEAVSYGIKIVDNED----DLRAAVKFVVTEFIQQAL 187

Query: 168 IEQYVDGIELTCGVMGDA---SLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPAKIPLDI 223
           +EQ++ G E   G++G+    +  V EI +    D               + PAKI   +
Sbjct: 188 VEQFIRGREFCVGLLGNGDPEAFPVLEIDLENDPDAIQTVDDKKQKPRGKICPAKISQKL 247

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283
             E+ RL+  A +A+  R  +R D   D  +  ++ LEIN    +     +   A  AGY
Sbjct: 248 AAEMVRLSKDAFRALELRDFARVDIRMDE-AENIYLLEINSMASLGLTGSYVYAANVAGY 306

Query: 284 SFRELLLWMVEDASC 298
            +  L+  ++E A+ 
Sbjct: 307 DYARLVNKILEVAAV 321


>gi|328956078|ref|YP_004373411.1| D-alanine--D-alanine ligase [Coriobacterium glomerans PW2]
 gi|328456402|gb|AEB07596.1| D-alanine--D-alanine ligase [Coriobacterium glomerans PW2]
          Length = 375

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/188 (26%), Positives = 95/188 (50%), Gaps = 23/188 (12%)

Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT----CGVM 182
           P  +KP  GGS++G+  +   +++   ++ + S++  D+++I+++++G+EL+    CG  
Sbjct: 190 PVAVKPACGGSAMGVSRVGCQEALGEAIMGALSFD--DKVIIQEWLEGVELSVAICCGQD 247

Query: 183 GDA-SLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-----------AKIPLDIYKEVQRL 230
           G A SL   EIA PK  F++   +       +  P            +   D+   + R 
Sbjct: 248 GAARSLTPVEIA-PKETFFTTAARLDPSAVDYFAPVREESLVANGHGRSADDLDSLIART 306

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           A  A  A+GCR ++R D +   LS  V + +++ V PGM+  S+ P   A +G+   ++ 
Sbjct: 307 ALDAFCALGCRDLARVDMM---LSDGVAYVIDVKVAPGMSENSLLPMAVAASGFDLGDIF 363

Query: 290 LWMVEDAS 297
             +V  A+
Sbjct: 364 DGLVRRAA 371



 Score = 63.2 bits (152), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 36/82 (43%), Positives = 45/82 (54%)

Query: 1  MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
          +AV+MGG S ERE SL SG   A  LE     V  +D    +   L   +PD+A   +HG
Sbjct: 3  VAVIMGGTSLEREFSLKSGHRIARELEAKDHIVLPLDATSELTCALRSGRPDVALIAVHG 62

Query: 61 NFGEDGLVQAILELLEIPYTHS 82
            GEDG +Q +LE L IPY  S
Sbjct: 63 LGGEDGAIQGLLEFLRIPYVGS 84


>gi|254411813|ref|ZP_05025589.1| D-ala D-ala ligase C-terminus family [Microcoleus chthonoplastes
           PCC 7420]
 gi|196181535|gb|EDX76523.1| D-ala D-ala ligase C-terminus family [Microcoleus chthonoplastes
           PCC 7420]
          Length = 340

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 71/248 (28%), Positives = 118/248 (47%), Gaps = 29/248 (11%)

Query: 69  QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPY 128
           + + +LL IPY  +     AL+  K ++K +V++ GV V    L+++   D+ +L+ PP 
Sbjct: 100 RGLFDLLNIPYVGNKAELMALTAHKAKAKAIVAAAGVKVPYGELLHQ--GDTPNLM-PPV 156

Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASL 187
           VIKP    +SLG+ +++        L Q+  +++ D++L+E Y++ G E+ CG       
Sbjct: 157 VIKPANSDNSLGVTLVRNMADYDEALTQA--FHYADEVLVEDYIELGREVRCGTFVKNG- 213

Query: 188 DVTEIAVPKSDF-----------YSYELKYSSL--------NSTHVLPAKIPLDIYKEVQ 228
             T I +P  ++           YS +LK +          N+           I  +VQ
Sbjct: 214 --TLIGLPLEEYSVNTQNHPIRNYSDKLKKTETGELTCAAKNNEKAWIVDTTDPITTKVQ 271

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
            +A   H+A+GCR  S  DF  DP  +  F LE  +    +P S+   MA  AG S  EL
Sbjct: 272 DVAKQCHKALGCRHYSLFDFRIDPQGQPWF-LEAGLYCSFSPKSVVACMAKAAGISVDEL 330

Query: 289 LLWMVEDA 296
           L   + +A
Sbjct: 331 LKTAIAEA 338


>gi|256829554|ref|YP_003158282.1| D-alanine--D-alanine ligase domain-containing protein
           [Desulfomicrobium baculatum DSM 4028]
 gi|256578730|gb|ACU89866.1| D-alanine--D-alanine ligase domain protein [Desulfomicrobium
           baculatum DSM 4028]
          Length = 331

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 69/255 (27%), Positives = 107/255 (41%), Gaps = 11/255 (4%)

Query: 52  DLAFNVLHGNFG--EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109
           D+ FN   G  G   +  V A+L+  +IPYT SG    ALS+ K  +  V+ + GVP   
Sbjct: 66  DMVFNFAEGMRGLAREAQVPALLDAWDIPYTFSGPEVLALSLHKGWTNAVLRAHGVPTAD 125

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGI--IVIKKDQSIPLDLLQSSSWNHGDQLL 167
             +VN         +  P  +KP+  GSS G+    + KD+    D+            L
Sbjct: 126 FRIVNSVEEVDAIDLPFPLFVKPVAEGSSKGVSDKSLVKDRWELRDICAHVLKTFHQPAL 185

Query: 168 IEQYVDGIELTCGVMGDAS----LDVTEI-AVPKSDFYSYELKYSSLNSTHVLPAKIPLD 222
           +E ++ G E T G++G       L V E+ A  + D  +Y            L      D
Sbjct: 186 VETFLPGREFTVGILGSGPQCRVLGVMEVLATARGDACAYTYANKQEWRERALYELAGDD 245

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI-FPEMAAYA 281
              +   +A  A QA+GC    R D   D   +  F +E+N   G+ P S   P +    
Sbjct: 246 RAAQAAEVARAAWQALGCLDAGRIDVRLDAQGQPRF-IEVNPLAGLNPESSDLPILCGKI 304

Query: 282 GYSFRELLLWMVEDA 296
           G  + EL+  +++ A
Sbjct: 305 GLGYDELIASIMDSA 319


>gi|27382562|ref|NP_774091.1| hypothetical protein blr7451 [Bradyrhizobium japonicum USDA 110]
 gi|27355734|dbj|BAC52716.1| blr7451 [Bradyrhizobium japonicum USDA 110]
          Length = 348

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 76/303 (25%), Positives = 125/303 (41%), Gaps = 52/303 (17%)

Query: 24  SALEDAGFKVSQI---DVDRSVGLVLAHLKPDLAFNVL---HGNFGEDGLVQAILELLEI 77
           S L  AG +V  +   D  + V   +   KP + F +L   H N   D  + + LEL+++
Sbjct: 43  STLRAAGHEVRALGAQDEIKPVREAIEEFKPHVVFTLLEEFHNNVAYDQHIASYLELMKV 102

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTMDSQHLISPPYVIKPLKG 135
           PYT        L+  K  SK +V    +   P+  V   R  +     ++ P ++K L  
Sbjct: 103 PYTGCNPRGLILARGKDLSKTLVHHRRI-AAPAFAVFPMRRKVKRPTRLALPLIVKSLNM 161

Query: 136 GSSLGI---IVIKKDQSIPLDLLQSSSWNH---GDQLLIEQYVDGIELTCGVMGDASLDV 189
             S GI    ++  D+     L +  ++ H       + EQ+++G EL  GV+G+  L V
Sbjct: 162 DGSFGISQASIVDTDEK----LAERVAFIHERVESAAIAEQFIEGRELYVGVLGNNRLRV 217

Query: 190 TEIAVPKSDFYSYELKYSSL---NSTHVLPAKIPLDI-YKE------------------- 226
             I         +ELK+ S+    S H+   K   D  Y+E                   
Sbjct: 218 LPI---------WELKFGSMGGRRSRHIATEKAKHDTDYQEKVGIVDGPAKDLAPEVTAR 268

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           +QR A   ++A+G  G +R DF         +++E N  P +     F   A +AG  + 
Sbjct: 269 IQRAAKRIYRALGLDGYARIDFRL-AADGTPYFIEANPNPEIAKSQEFATAAQHAGLKYP 327

Query: 287 ELL 289
           +LL
Sbjct: 328 DLL 330


>gi|325111080|ref|YP_004272148.1| D-alanine--D-alanine ligase domain protein [Planctomyces
           brasiliensis DSM 5305]
 gi|324971348|gb|ADY62126.1| D-alanine--D-alanine ligase domain protein [Planctomyces
           brasiliensis DSM 5305]
          Length = 349

 Score = 63.5 bits (153), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 73/288 (25%), Positives = 123/288 (42%), Gaps = 32/288 (11%)

Query: 9   SSEREVSLSSGKACASALEDAGFK----VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGE 64
           +SER+V L   +A ++A+   G +       +D+ R +   L   +PD  FN++    G 
Sbjct: 22  ASERDV-LVQAEAVSAAVSRMGHRPRSLACTLDLQR-LQRKLIERRPDCVFNLVESLDGS 79

Query: 65  DGL---VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ 121
           D L   V  +LE L+IPYT S  ++   S DK+ +K ++ +  +P  P         DS 
Sbjct: 80  DRLMPLVPLLLEQLQIPYTGSSAVSIVQSSDKLSAKHLLRTASLPT-PGWSDGEDVPDS- 137

Query: 122 HLISPPYVIKPLKGGSSLGI----IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            L+  P ++K +   +S G+    I      S   ++L       G     E+++DG E 
Sbjct: 138 -LLHRPVIVKAIHEHASFGLDDSSIQTFHSASQLREVLDDRLAATGQPHFAEEFIDGREF 196

Query: 178 TCG---------VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHV-LPAKIPL-----D 222
                       V+  A +D + +         Y  K+   ++ +V  P +  L     D
Sbjct: 197 NVSLLAGSRGPVVLPPAEIDFSFLPSESLRIVGYAAKWEEDSAEYVGTPRRFDLPEQDRD 256

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270
           +  E+Q L        G +G +R DF  D   R+ + LEIN  P + P
Sbjct: 257 LVGEIQELCRRCWNVFGLKGYARVDFRVD-TQRRPWILEINGNPCLAP 303


>gi|156146892|gb|ABU53458.1| D-alanylalanine synthetase [Streptococcus oralis]
          Length = 147

 Score = 63.5 bits (153), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 42/130 (32%), Positives = 69/130 (53%), Gaps = 6/130 (4%)

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           ++ P   KP   GSS+GI   K +    L      ++ +  ++L+EQ V   E+  G++G
Sbjct: 10  LTYPVFTKPSNMGSSVGIS--KAENQAELRQSLELAFKYDSRVLVEQGVVAREIEVGLLG 67

Query: 184 DASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           +  +  T   E+ V    FY YE KY     T  +PA+IP ++   +++ A LA +AIG 
Sbjct: 68  NYDVKSTLPGEV-VKDVAFYDYEAKYIDNKITMAIPAEIPAEVAATMRQNAELAFRAIGG 126

Query: 241 RGISRSDFLF 250
           +G+SR DF +
Sbjct: 127 KGLSRCDFFY 136


>gi|322382668|ref|ZP_08056532.1| D-alanine-D-alanine ligase-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
 gi|321153366|gb|EFX45789.1| D-alanine-D-alanine ligase-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
          Length = 130

 Score = 63.2 bits (152), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 38/120 (31%), Positives = 61/120 (50%), Gaps = 2/120 (1%)

Query: 22  CASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81
           C SA+     K+  + V R+ G  +  +  D  F+VLHG  GEDG +Q + EL  IPY  
Sbjct: 8   CRSAVLSPDKKMHGLLVMRNKGYQIQRI--DAVFSVLHGKSGEDGAIQGLFELSGIPYVG 65

Query: 82  SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGI 141
             + +SA+ MDK  +  V  + G      +++N       + ++ P  +KP + GSS G+
Sbjct: 66  CDVQSSAVCMDKSLTYIVAKNAGFGTPEFLILNHGDKPDSNTLTYPVFVKPARSGSSFGV 125


>gi|284046365|ref|YP_003396705.1| D-alanine--D-alanine ligase [Conexibacter woesei DSM 14684]
 gi|283950586|gb|ADB53330.1| D-alanine--D-alanine ligase [Conexibacter woesei DSM 14684]
          Length = 439

 Score = 63.2 bits (152), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 57/211 (27%), Positives = 91/211 (43%), Gaps = 26/211 (12%)

Query: 12  REVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAI 71
           R V L  G A    +E +    S++  DR++ +        +  N +HG  GEDG +   
Sbjct: 72  RAVELRLGAADGPFVEPS---TSRLRGDRALAI-------SVVLNAIHGTGGEDGALLGA 121

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL-------- 123
           LEL  +P+   G+ A A+ MDK  +K V+   G+ V P   + R   +            
Sbjct: 122 LELSGVPHAGRGVAAFAVGMDKHLAKTVLREAGIDVLPHRRIERGEWEHDRAAVLRSVAD 181

Query: 124 -ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGV 181
            +  P V+KP   GSS+G+        +   L  +   +   Q ++E +  G  EL C V
Sbjct: 182 EVPLPCVVKPATLGSSIGVARCADPAEVEEALELAFELDR--QAVVEPFATGATELNCAV 239

Query: 182 MG--DASLDVTEIAVP--KSDFYSYELKYSS 208
           +G     L V+E+  P       ++E KY S
Sbjct: 240 LGRPGGELRVSEVERPLGGEAGLTFEDKYLS 270


>gi|294084785|ref|YP_003551543.1| D-alanine--D-alanine ligase [Candidatus Puniceispirillum marinum
           IMCC1322]
 gi|292664358|gb|ADE39459.1| D-alanine--D-alanine ligase [Candidatus Puniceispirillum marinum
           IMCC1322]
          Length = 375

 Score = 62.8 bits (151), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 75/312 (24%), Positives = 138/312 (44%), Gaps = 33/312 (10%)

Query: 7   GISSEREVSLS-SGKACASALEDAGFKVSQIDVDRSVGLV-LAHLKPDLAFN-VLHGNFG 63
           G  +++ V+++ + K   S L     KVS  ++     L  LA  KPDL F+ V +  F 
Sbjct: 70  GRKNQKNVAITINAKLIHSILSKKYSKVSITEISTLECLTKLAKRKPDLVFSGVKYFEFE 129

Query: 64  EDGL-VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDS 120
           E+ + +   LEL  I Y  S   A      K  +K +V   G+     +++N  + ++D+
Sbjct: 130 ENQIWLNDFLELNHIRYIGSNHAALDREHHKGFAKSIVKQAGILTADYVIINTNKVSVDN 189

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQL--------LIEQYV 172
              I  P  +KP++GG S+GI     D S+  D  Q  +    DQ+        L+E Y+
Sbjct: 190 NMNIPYPVFVKPVRGGDSIGI----DDLSLVFDRKQLDA--KVDQICNVLNCDALVESYL 243

Query: 173 DGIELTCGVMGDASLDV-----TEIAVPKSD----FYSYELKYSSLNSTHVLPAKIPLDI 223
            G E + G++ D   ++      EI  PK++       +E+K     +   +  K    +
Sbjct: 244 TGREFSVGILEDERTNLLTAMPIEIIAPKNERGHRVLDHEIKRLDQETVRKVKNKT---L 300

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283
           +K++  +   A +A+G R   R D          F +E N+ PG++    +   A     
Sbjct: 301 HKKLSEVGKSAFKALGGRSFGRIDIRLCAKGLPHF-VEANLMPGLSKGYFYRSCALNLNM 359

Query: 284 SFRELLLWMVED 295
           ++ +++L +  +
Sbjct: 360 TYDDMILLLCSN 371


>gi|94968579|ref|YP_590627.1| D-alanine--D-alanine ligase [Candidatus Koribacter versatilis
           Ellin345]
 gi|94550629|gb|ABF40553.1| D-alanine--D-alanine ligase [Candidatus Koribacter versatilis
           Ellin345]
          Length = 344

 Score = 62.8 bits (151), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 72/297 (24%), Positives = 132/297 (44%), Gaps = 28/297 (9%)

Query: 24  SALEDAGFKVSQ--IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGL---VQAILELLEIP 78
           +ALE  G + S   +D  +     LA    DL FN+     G+D     V A L+L+ IP
Sbjct: 46  AALEKLGHEPSYHILDGHQQSLFALAKSGTDLIFNLTESYDGDDTKEMHVTAFLDLVNIP 105

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSS 138
           YT +G     L+ DK  +K++ +  G+         R  +D  H +S P ++KP     S
Sbjct: 106 YTGTGPHGHMLAQDKSLAKKMFAFHGIQSPYFATAYRGIVDHAHDVSFPLIVKPTSEDGS 165

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGD---QLLIEQYVDGIELTCGVMGD---------AS 186
           +GI       S+  +L++  ++   +     LIE+Y++G E+   ++G            
Sbjct: 166 IGIDAAAVVSSVK-ELMERVAYIQAEFDSPALIEEYIEGREIYSAILGSYETANALPLVE 224

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQR----LAFLAHQAIGCR 241
           LD++++        S ++K+      +    + +  D+ +E +      A  A++A+  R
Sbjct: 225 LDLSKLPKGMPKIASQDVKFEKDTEAYKKTKSAVAEDLDEETETKLTATAIKAYRAVKLR 284

Query: 242 GISRSDFLFDPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              R D     LS K  V+ +E N  P ++    F   A  +G S+ +++  +V+ A
Sbjct: 285 DYGRIDMR---LSTKGEVYVIEANPNPWLSSGQEFAMAAKKSGLSYTQMIGEIVDHA 338


>gi|20806600|ref|NP_621771.1| D-alanine-D-alanine ligase and related ATP-grasp enzyme
           [Thermoanaerobacter tengcongensis MB4]
 gi|20515044|gb|AAM23375.1| D-alanine-D-alanine ligase and related ATP-grasp enzymes
           [Thermoanaerobacter tengcongensis MB4]
          Length = 332

 Score = 62.8 bits (151), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 63/220 (28%), Positives = 100/220 (45%), Gaps = 14/220 (6%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD---SQHLISPPY 128
           LEL  IPY  SGI  +A   DK   K +V++ G+P  P  +V     +     HL  P +
Sbjct: 82  LELFNIPYVGSGIDLAA--TDKRMRKDIVAAHGLP-TPKYVVAYSANEIPSVDHLRFPLF 138

Query: 129 VIKPLKGGSSLGIIV--IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186
           V KP+ G  S GI    I  D+S    ++   +   G   LIE++++G E+T G++G  +
Sbjct: 139 V-KPIMGRGSAGIDEENIVYDKSRLPKVVSKITEKIGQPALIEEFIEGREVTVGIIGYRN 197

Query: 187 ---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
              L + EI        +YE K    N     P ++P +I K ++  A    + +  R  
Sbjct: 198 PIVLPLLEIGYNNVKTNTYEHKMFD-NEIIKCPMEVPEEIEKRIKDTALRIFKVLNARDY 256

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283
           +R D +        ++LE+N   G+T      E   + GY
Sbjct: 257 ARIDMILGK-DNVPYFLELNTYAGLTTAVERGEKHVHHGY 295


>gi|113476541|ref|YP_722602.1| D-alanine--D-alanine ligase [Trichodesmium erythraeum IMS101]
 gi|110167589|gb|ABG52129.1| D-alanine--D-alanine ligase [Trichodesmium erythraeum IMS101]
          Length = 361

 Score = 62.8 bits (151), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 70/285 (24%), Positives = 120/285 (42%), Gaps = 39/285 (13%)

Query: 26  LEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
           L+D   ++ QIDV      V+ H+   L        F ED        +L +P   S   
Sbjct: 79  LQDMILQLPQIDV------VVPHMFCFLGMTSFRA-FFED--------MLNLPLVGSPSY 123

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145
            +AL+ +K +++ VV + GV V  +  + R        + PP+V+KP    +SLG+ ++ 
Sbjct: 124 CTALATNKAQTRNVVLASGVQVAKAQQLGR---GETLTMKPPFVVKPTSEDNSLGLTLVW 180

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS---------LDVTEIAVPK 196
            +  I   L     +   ++LL+E Y+ G EL   V+   S           VTE    +
Sbjct: 181 DESQIEAAL--DKGFELDNKLLVEDYIPGRELRVAVVERESKLSVLPMIEYLVTEEHPIR 238

Query: 197 SDFYSYELKYSSLNSTH--------VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           +    Y L+                + PA +  ++++++   A  AH A+GCR  S  DF
Sbjct: 239 TVHDKYVLQSDGTPGKQPEKPIAQPICPANVTPELFEKLVNAAKNAHIALGCRDYSLYDF 298

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE--LLLW 291
                + + ++LE  +  G   +S+   M    G S  +  L LW
Sbjct: 299 RVHAETNEPYFLEAGLFWGFGKISMISRMLQADGQSLEDVSLELW 343


>gi|156146036|gb|ABU53079.1| D-alanylalanine synthetase [Streptococcus mitis]
 gi|156146044|gb|ABU53083.1| D-alanylalanine synthetase [Streptococcus mitis]
          Length = 147

 Score = 62.4 bits (150), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 43/133 (32%), Positives = 69/133 (51%), Gaps = 6/133 (4%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   K +    L      ++ +  ++L+EQ V+  E+  G
Sbjct: 7   EEKLTYPVFTKPSNMGSSVGIS--KSENQEELRQALKLAFQYDSRVLVEQGVNAREIEVG 64

Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           ++G+  +  T   E+ V   DFY Y+ KY     T  +PAKI  D+   ++R A  A +A
Sbjct: 65  LLGNYDVKSTLPGEV-VKDVDFYDYDAKYIDNKITMDIPAKISDDVIAVMRRNAETAFRA 123

Query: 238 IGCRGISRSDFLF 250
           IG  G+SR DF +
Sbjct: 124 IGGLGLSRCDFFY 136


>gi|110637336|ref|YP_677543.1| D-alanine--D-alanine ligase A [Cytophaga hutchinsonii ATCC 33406]
 gi|110280017|gb|ABG58203.1| D-alanine--D-alanine ligase A [Cytophaga hutchinsonii ATCC 33406]
          Length = 897

 Score = 62.4 bits (150), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 41/131 (31%), Positives = 67/131 (51%), Gaps = 21/131 (16%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D AF  LHG +GEDG +Q +L+   IPY+ SGIL SA+ ++K   K++V+         +
Sbjct: 112 DFAFLALHGPYGEDGAIQGMLDWNNIPYSGSGILPSAIGINKYIQKKLVAQASFNGPNYV 171

Query: 112 LVNRFT----MDSQHLISP-------PYVIKPLKGGSSLGIIVIKK----------DQSI 150
              + T     D++ L++        P+V+K    GSS+GI VI +          ++S 
Sbjct: 172 TYKKSTWLKGADTKALLAHFESSVGFPFVVKAPSQGSSIGITVISERNEEKLKQALNRSF 231

Query: 151 PLDLLQSSSWN 161
            L  + ++ WN
Sbjct: 232 FLQEITAADWN 242



 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 69/284 (24%), Positives = 119/284 (41%), Gaps = 52/284 (18%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D  F  LHG  GEDG +Q  LE  ++PY  SGI +S ++++K  + +++   G+ V    
Sbjct: 590 DGVFIALHGRPGEDGSMQKELEKYQLPYNGSGIQSSQITINKFETNRILREHGISVANHR 649

Query: 112 LVNRFT-MDS-QHLISP-------PYVIKPLKGGSSLGIIVIK-KDQ------------- 148
           +V +   +D+ + L+S        P + KP   G S  +  IK +D+             
Sbjct: 650 MVYKQEWLDAGEKLLSEIESGFIYPIIAKPSDDGCSSAVKKIKNRDELRAYTRLMFGEEA 709

Query: 149 ------SIPLDLLQSSSWNHGDQLLIEQYVDG------IELTCGVM------GDASLDVT 190
                 S  L L  +  +   D  LIE  V        +E+T G+M      G+   ++ 
Sbjct: 710 IQGSVSSSVLGLKYNEEFPQKDYFLIEDLVSKGNAKHFLEVTGGLMTRFNDKGNVEYEIF 769

Query: 191 E--IAVPKSDFYSYELKYSSLNSTHVLPAKIPLD------IYKEVQRLAFLAHQAIGCRG 242
           E   ++   D  S E K+ +    ++ PA+   +      +  EV+       + +  +G
Sbjct: 770 EPSESLATGDVLSLEEKFLAGEGQNITPARYTTNKADYEQVASEVRATLKRVAEVLNIQG 829

Query: 243 ISRSDFL---FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283
            +R D     F+    +   +E+N  PGMTP +      A  GY
Sbjct: 830 YARIDAFVRVFENNRSETIIIEVNSLPGMTPATCIFHQTAINGY 873



 Score = 38.9 bits (89), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 33/129 (25%), Positives = 55/129 (42%), Gaps = 9/129 (6%)

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKS------DFYSYELKYSSLNSTHVLPAKIPLDIY 224
           ++ G E +C V+ D   D   IA+P +      DF+ Y  KY    S  + P  IP +  
Sbjct: 312 FIKGQEFSCIVIQDE--DGNPIALPPTGIVKGNDFFDYRSKYLPGMSRKITPIDIPGEQV 369

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
           + ++      +  +     +R D    P   +VF  + N   GM P S F   AA  G +
Sbjct: 370 ELIRSECCRLYSTLQFNVYARIDGFISP-EGEVFLNDPNTTSGMMPSSFFFHQAAEIGLN 428

Query: 285 FRELLLWMV 293
             + L +++
Sbjct: 429 PSQFLTYII 437


>gi|113476540|ref|YP_722601.1| D-alanine--D-alanine ligase [Trichodesmium erythraeum IMS101]
 gi|110167588|gb|ABG52128.1| D-alanine--D-alanine ligase [Trichodesmium erythraeum IMS101]
          Length = 361

 Score = 62.4 bits (150), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 71/289 (24%), Positives = 123/289 (42%), Gaps = 47/289 (16%)

Query: 26  LEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
           L+D   ++ QIDV      V+ H+   L        F ED        +L +P   S   
Sbjct: 79  LQDMILQLPQIDV------VVPHMFCFLGMTSFRA-FFED--------MLNLPLVGSPSY 123

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145
            +AL+ +K +++ VVS+ GV V  +  + R        + PP+V+KP    +SLG+ ++ 
Sbjct: 124 CTALATNKAQTRNVVSASGVQVAKAQQLRR---GETLTMKPPFVVKPTSEDNSLGVTLVW 180

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM-GDASLDVTEIAVPKSDFY-SYE 203
            +  I   L     +   D+LL+E Y+ G EL   V+     L V    +P  ++  + E
Sbjct: 181 DESQIEAAL--DKGFELEDKLLVEDYIPGRELRVAVVERKGELQV----LPMIEYLVTEE 234

Query: 204 LKYSSLNSTHVL-------------------PAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244
               ++N   VL                   PA +  ++++++   A  AH A+GCR  S
Sbjct: 235 HPIRTVNDKLVLQSDGTPEKQPEKPIAKPICPANVTPELFEKLANAAKSAHIALGCRDYS 294

Query: 245 RSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE--LLLW 291
             DF     + + ++LE  +      +++   M    G S  +  L LW
Sbjct: 295 LYDFRVHTNTNEPYFLEAGLFWTFGKIAMISRMLQADGESLEDVALELW 343


>gi|758371|gb|AAA87680.1| putative D-alanine:D-alanine ligase [Weissella confusa]
          Length = 202

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/194 (24%), Positives = 97/194 (50%), Gaps = 15/194 (7%)

Query: 71  ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN-----RFTMDS--QHL 123
           +  LL+ PY  +G  ASA+S DK  +K++++  GV     +L+       +T +   + L
Sbjct: 1   LFRLLQKPYIGAGTAASAMSFDKDLTKRILNQAGVRNTKYVLLTDQDYQNYTYEGLVKEL 60

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVM 182
            +    +K  K GSS+GI  +         +  +  +++  ++L+E  ++   E+   ++
Sbjct: 61  GTEVLFVKAAKQGSSVGISRVTNAAEFEAGVKDALQYDY--KVLVEAALNKPREVFISIL 118

Query: 183 GDASLDVTE---IAVPKSD-FYSYELKYSSLNS-THVLPAKIPLDIYKEVQRLAFLAHQA 237
           G+     +    I +P+ D +Y Y  K+   +     LP ++  D+ KE+  +A  A++A
Sbjct: 119 GNEQPRASRLGGIVLPEQDVWYDYNNKFVDASGMVFELPVELGDDLEKEITDMALTAYKA 178

Query: 238 IGCRGISRSDFLFD 251
           +G  G++R DF+ D
Sbjct: 179 LGLVGLTRMDFMID 192


>gi|193214834|ref|YP_001996033.1| type 11 methyltransferase [Chloroherpeton thalassium ATCC 35110]
 gi|193088311|gb|ACF13586.1| Methyltransferase type 11 [Chloroherpeton thalassium ATCC 35110]
          Length = 656

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 61/291 (20%), Positives = 125/291 (42%), Gaps = 26/291 (8%)

Query: 31  FKVSQIDVDRSVGLVLAHLKP--DLAFNVLHGNFGEDGL----VQAILELLEIPYTHSGI 84
           +K++ ++   ++   LA +KP  D  FN+    F  D      + ++LE++   YT SG 
Sbjct: 347 YKITYLNNHNTLIHDLARIKPKVDFVFNLCDEGFNNDPRKELHIPSLLEIMGFRYTGSGP 406

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
              A   DK   + +    G+ V  +  +       +   + P + KP  G SS GI   
Sbjct: 407 QCLAYCYDKSLVRGIAKEMGIAVPEAFFIRPEETSFELPFNFPVIAKPNFGDSSFGITTR 466

Query: 145 KKDQSIPLDLLQS-----SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDF 199
               +I  +L+ +     S   +   +L+E+++ G +L+ G++G+A      + + + D+
Sbjct: 467 SVSYTIE-ELVNAISEIRSKIGYEKPILVEEFLTGKDLSLGIIGNAPESYMVLPIIEEDY 525

Query: 200 Y----------SYELKY---SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRS 246
                       YE K+   S   +   +PA+I  +  K ++    +  + + CR   R 
Sbjct: 526 SGLPESLPKICGYEAKWLPDSPYATVKSIPAQISEETKKLLEEWCVMLFERLECRDYCRF 585

Query: 247 DFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           D+  D        LE+N  PG        +M+A++   + +++  ++ +A 
Sbjct: 586 DWRLDANGNPKL-LEVNPNPGWCWDGHLAKMSAFSEIDYPKMIETILAEAE 635


>gi|301167561|emb|CBW27144.1| putative D-alanine--D-alanine ligase [Bacteriovorax marinus SJ]
          Length = 336

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 64/289 (22%), Positives = 125/289 (43%), Gaps = 26/289 (8%)

Query: 24  SALEDAGFKVSQIDVDRSVGLV---LAHLKPDLAFNVLHGNFGE---DGLVQAILELLEI 77
            AL + G KV    V   + L+   +   KP + FN+L    GE   D  V + LELL +
Sbjct: 37  KALNNLGHKVEICGVISDLKLIKNAIDKFKPTVIFNLLEEFDGEVLFDQNVVSYLELLRV 96

Query: 78  PYTHSGILASALSMDKMRSKQVV--SSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKG 135
           PYT        L+ DK  +K+++       P       NR    S+HL   P ++K L  
Sbjct: 97  PYTGCNPRGLMLARDKALAKKILLFHRIKTPHFQVFPKNRKVKTSKHL-KYPLIVKCLTE 155

Query: 136 GSSLGII---VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS------ 186
            +SL I    ++  ++ +  + ++  +   G   ++E++++G E   GVMG+        
Sbjct: 156 EASLAIAKASIVYNEEKLK-ERVKYINQKIGVDAIVEEFIEGREFYVGVMGNYKTQTLPV 214

Query: 187 --LDVTEIAVPKSDFYS----YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
             L    +  P+ + YS    +  KY          A +  ++  +++ +    ++ +  
Sbjct: 215 WELKFENVEKPEKELYSNRAKWNNKYRDRKGIKTEAATLSPELELKIKNICKKVYKHLNL 274

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
            G +R D   +P + +V+ +E+N  P +         A ++  ++ +L+
Sbjct: 275 NGYARVDLRMNP-AGEVYVIEVNPNPNIAREDELASSALHSKVNYEQLI 322


>gi|68535998|ref|YP_250703.1| putative D-alanine-D-alanine ligase (fragment) [Corynebacterium
           jeikeium K411]
 gi|68263597|emb|CAI37085.1| putative D-alanine-D-alanine ligase (fragment) [Corynebacterium
           jeikeium K411]
          Length = 193

 Score = 61.6 bits (148), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 31/64 (48%), Positives = 39/64 (60%), Gaps = 2/64 (3%)

Query: 43  GLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS 102
           G   AH+  D+ F VLHG  GEDG +Q + EL  IPY  +G+LASA  MDK  +K +   
Sbjct: 116 GRTYAHV--DVIFPVLHGQNGEDGTIQGLFELAGIPYVGNGVLASAAGMDKEYTKCLAKQ 173

Query: 103 CGVP 106
            GVP
Sbjct: 174 AGVP 177


>gi|183585294|gb|ACC63961.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|183585298|gb|ACC63963.1| D-alanine-D-alanine ligase [Clostridium perfringens]
          Length = 131

 Score = 61.6 bits (148), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 72/135 (53%), Gaps = 6/135 (4%)

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194
           GGSS+   +++  +++   +L++  ++   +++IE+Y+ G E+TC ++    L V  I  
Sbjct: 2   GGSSVATTLVESKEAVKDAVLEALKYDT--EVMIEEYIKGDEITCPIIDGKMLPVLAIK- 58

Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
           PK  F+    KY    +   +  K+  D++KEV+++A   ++ + C   +R D L     
Sbjct: 59  PKGKFFDIASKYEDGGADEFI-VKLNEDLHKEVEKMALETYKLLKCDVYARVDMLVK--D 115

Query: 255 RKVFWLEINVQPGMT 269
              + LE+N  PGMT
Sbjct: 116 NIPYVLEVNTLPGMT 130


>gi|183585290|gb|ACC63959.1| D-alanine-D-alanine ligase [Clostridium perfringens]
          Length = 131

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 72/135 (53%), Gaps = 6/135 (4%)

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194
           GGSS+   +++  +++   +L++  ++   +++IE+Y+ G E+TC ++    L V  I  
Sbjct: 2   GGSSVATTLVESKEAVKDAVLEALKYDT--EVMIEEYIKGDEITCPIIDGKMLPVLAIK- 58

Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
           PK  F+    KY    +   +  K+  D++KEV+++A   ++ + C   +R D L     
Sbjct: 59  PKGKFFDIASKYEDGGADEFI-VKLNEDLHKEVEKMALETYKLLKCDVYARVDMLV--RD 115

Query: 255 RKVFWLEINVQPGMT 269
              + LE+N  PGMT
Sbjct: 116 NVPYVLEVNTLPGMT 130


>gi|170702583|ref|ZP_02893457.1| D-alanine--D-alanine ligase [Burkholderia ambifaria IOP40-10]
 gi|170132517|gb|EDT00971.1| D-alanine--D-alanine ligase [Burkholderia ambifaria IOP40-10]
          Length = 357

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 58/251 (23%), Positives = 113/251 (45%), Gaps = 31/251 (12%)

Query: 50  KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109
           +     N+LHGN+GEDG +Q    ++ IP +   +L ++L+M K    + V+       P
Sbjct: 85  RQTFVLNLLHGNYGEDGCIQGAASMMSIPGSFGPVLPASLAMSKYHMSRYVAKA----HP 140

Query: 110 SILVNRFTMDSQHLISPPY------------VIKPLKGGSSLGI--IVIKKDQSIPLDLL 155
           S  + R  + S   I   +            V+KP   G+SL      ++++    +   
Sbjct: 141 SARMPRTLILSDGDIGIAHKRITDAFPEGDVVMKPNSLGASLFTQRFTMRREAVDAVRSN 200

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGD----ASLDVTEIAVPKSDF-YSYELKYSSLN 210
            ++   +    L+++Y+ G E + G   +     +L V  I      F ++ + ++  + 
Sbjct: 201 LAAILEYDRHALVQEYIAGDEYSVGCFQEHDVVTALPVVRIETADGFFGHAQKHRHGKVR 260

Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK--VFWLEINVQPGM 268
            T V       ++ + ++RL+    + +G R + R DF+   ++R   + +LE N  PG+
Sbjct: 261 ETVVFEDD---EVTRAIKRLSVDIFRDVGFRNMCRFDFI---VTRNGDIVFLEANPIPGL 314

Query: 269 TPVSIFPEMAA 279
              SIFP+M A
Sbjct: 315 MKNSIFPKMLA 325


>gi|297543611|ref|YP_003675913.1| D-alanine--D-alanine ligase [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
 gi|296841386|gb|ADH59902.1| D-alanine--D-alanine ligase [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
          Length = 325

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 59/224 (26%), Positives = 107/224 (47%), Gaps = 18/224 (8%)

Query: 70  AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD---SQHLISP 126
           A LE+  IPY  SG+    ++ DK   K +V+  G+P  P  +V + + +     HL  P
Sbjct: 80  AFLEVFNIPYVGSGL--DLVATDKRMRKDIVAFHGLP-TPKYVVAKNSQEIPPVGHLRFP 136

Query: 127 PYVIKPLKGGSSLGI----IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            +V KP+ G  S GI    IV  KD+ +P  +++  +   G   LIE++++G E+T G++
Sbjct: 137 LFV-KPISGRGSAGIDEENIVYDKDK-LP-QVVRKITEKIGQAALIEEFIEGKEVTVGII 193

Query: 183 GDAS---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
           G      L + E+        +YE K    N     P ++  ++ ++++  A   ++ + 
Sbjct: 194 GYKHPQVLPLLEVGYNNVKTNTYEHKMFD-NEIIKCPMEVSKEVEEKIKETALNIYKVLN 252

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283
            +  +R D +        ++LE+N   G+T  S   E   + GY
Sbjct: 253 AKDFARIDMILSK-DNVPYFLELNTFAGLTMSSSKGEKHVHHGY 295


>gi|307266588|ref|ZP_07548119.1| D-alanine--D-alanine ligase [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306918385|gb|EFN48628.1| D-alanine--D-alanine ligase [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 250

 Score = 60.8 bits (146), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 59/239 (24%), Positives = 109/239 (45%), Gaps = 19/239 (7%)

Query: 70  AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV-NRFTMDSQHLISPPY 128
           A LE+  IPY  SG+    ++ DK   K +V+S G+P    ++  N   + S   +  P 
Sbjct: 5   AFLEVFNIPYVGSGL--DVVATDKRMRKDIVASHGLPTPKYVIAQNPQEIPSVDHLKFPL 62

Query: 129 VIKPLKGGSSLGI----IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
             KP+ G  S GI    I+  KD+ +P  ++   +   G   LIE++++G E+T G++G 
Sbjct: 63  FAKPISGRGSAGIDEENIIYDKDK-LP-QVVSKITDKIGQAALIEEFIEGKEVTVGIIGY 120

Query: 185 AS---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241
                L + E+        +YE K    N     P ++  ++ ++++  A   ++ +  +
Sbjct: 121 KHPQVLPLLEVGYNNVKTNTYEHKMFD-NEIIKCPMEVSKEVEEKIKETALNIYKVLNAK 179

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
             +R D +        ++LE+N   G+T  S   E   + GY     + +M + A   R
Sbjct: 180 DFARIDMILSK-DNVPYFLELNTFAGLTMSSSKGEKHVHHGY-----MGYMAKAAGLTR 232


>gi|183585292|gb|ACC63960.1| D-alanine-D-alanine ligase [Clostridium perfringens]
          Length = 131

 Score = 60.8 bits (146), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/135 (28%), Positives = 72/135 (53%), Gaps = 6/135 (4%)

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194
           GGSS+   +++  +++   +L++  ++   +++IE+Y+ G E+TC ++    L V  I  
Sbjct: 2   GGSSVATTLVESKEAVKDAVLEALKYDT--EVMIEEYIKGDEITCPIIDGKMLPVLAIK- 58

Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
           PK  F+    KY    +   +  K+  D++KEV+++A   ++ + C   +R D L     
Sbjct: 59  PKGKFFDIASKYEDGGADEFI-VKLNEDLHKEVEKMALETYKLLKCDVYARVDMLVKDNI 117

Query: 255 RKVFWLEINVQPGMT 269
             V  LE+N  PGMT
Sbjct: 118 PNV--LEVNTLPGMT 130


>gi|215404957|ref|ZP_03417138.1| D-alanyl-alanine synthetase A [Mycobacterium tuberculosis 02_1987]
          Length = 134

 Score = 60.8 bits (146), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 33/98 (33%), Positives = 51/98 (52%), Gaps = 2/98 (2%)

Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
           FY +  KY    +   +PAK+   + + +++LA  A  AI CRG++R DF        + 
Sbjct: 31  FYDFATKYLDDAAELDVPAKVDDQVAEAIRQLAIRAFAAIDCRGLARVDFFLTDDGPVIN 90

Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             EIN  PG T +S++P M   +G  +  LL  M+E A
Sbjct: 91  --EINTMPGFTTISMYPRMWEASGVDYPTLLATMIETA 126


>gi|215404958|ref|ZP_03417139.1| D-alanyl-alanine synthetase A [Mycobacterium tuberculosis 02_1987]
 gi|289746781|ref|ZP_06506159.1| D-alanyl-alanine synthetase A [Mycobacterium tuberculosis 02_1987]
 gi|289687309|gb|EFD54797.1| D-alanyl-alanine synthetase A [Mycobacterium tuberculosis 02_1987]
          Length = 157

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 26/55 (47%), Positives = 40/55 (72%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP 106
           D+ F VLHG +GEDG +Q +LEL  +PY  +G+LASA+ MDK  +K+++++   P
Sbjct: 96  DVVFPVLHGPYGEDGTIQGLLELAGVPYVGAGVLASAVGMDKEFTKKLLAAIDFP 150


>gi|289746780|ref|ZP_06506158.1| D-alanyl-alanine synthetase A [Mycobacterium tuberculosis 02_1987]
 gi|289687308|gb|EFD54796.1| D-alanyl-alanine synthetase A [Mycobacterium tuberculosis 02_1987]
          Length = 133

 Score = 60.5 bits (145), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 33/98 (33%), Positives = 51/98 (52%), Gaps = 2/98 (2%)

Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
           FY +  KY    +   +PAK+   + + +++LA  A  AI CRG++R DF        + 
Sbjct: 30  FYDFATKYLDDAAELDVPAKVDDQVAEAIRQLAIRAFAAIDCRGLARVDFFLTDDGPVIN 89

Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             EIN  PG T +S++P M   +G  +  LL  M+E A
Sbjct: 90  --EINTMPGFTTISMYPRMWEASGVDYPTLLATMIETA 125


>gi|156146038|gb|ABU53080.1| D-alanylalanine synthetase [Streptococcus mitis]
          Length = 147

 Score = 60.5 bits (145), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/133 (31%), Positives = 69/133 (51%), Gaps = 6/133 (4%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   K +    L      ++ +  ++L+EQ V+  E+  G
Sbjct: 7   EEKLTYPVFTKPSNMGSSVGIS--KSENQEELRQALKLAFQYDSRVLVEQGVNAREIEVG 64

Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           ++G+  +  T   E+ V   DFY Y+ KY     T  +PAKI  D+   +++ A  A +A
Sbjct: 65  LLGNYDVKSTLPGEV-VKDVDFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRA 123

Query: 238 IGCRGISRSDFLF 250
           IG  G+SR DF +
Sbjct: 124 IGGLGLSRCDFFY 136


>gi|289577322|ref|YP_003475949.1| D-alanine--D-alanine ligase [Thermoanaerobacter italicus Ab9]
 gi|289527035|gb|ADD01387.1| D-alanine--D-alanine ligase [Thermoanaerobacter italicus Ab9]
          Length = 325

 Score = 60.5 bits (145), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 59/224 (26%), Positives = 106/224 (47%), Gaps = 18/224 (8%)

Query: 70  AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD---SQHLISP 126
           A LE+  IPY  SG+    ++ DK   K +V+  G+P  P  +V + + +     HL  P
Sbjct: 80  AFLEVFNIPYVGSGL--DLVATDKRMRKDIVAFHGLP-TPKYVVAKNSQEIPPVGHLRFP 136

Query: 127 PYVIKPLKGGSSLGI----IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            +V KP+ G  S GI    IV  KD+ +P  ++   +   G   LIE++++G E+T G++
Sbjct: 137 LFV-KPISGRGSAGIDEENIVYDKDK-LP-QVVSKITEKIGQAALIEEFIEGKEVTVGII 193

Query: 183 GDAS---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
           G      L + E+        +YE K    N     P ++  ++ ++++  A   ++ + 
Sbjct: 194 GYKHPQVLPLLEVGYNNVKTNTYEHKMFD-NEIIKCPMEVSKEVEEKIKETALNIYKVLN 252

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283
            +  +R D +        ++LE+N   G+T  S   E   + GY
Sbjct: 253 AKDFARIDMILSK-DNVPYFLELNTFAGLTMSSSKGEKHVHHGY 295


>gi|3983141|gb|AAC83823.1| putative D-alanine:D-alanine ligase [Paenibacillus popilliae]
          Length = 158

 Score = 60.5 bits (145), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 48/164 (29%), Positives = 76/164 (46%), Gaps = 29/164 (17%)

Query: 77  IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPP 127
            PY  +G+LAS++ MDK   K V +  G+P C      R   D          Q  +  P
Sbjct: 6   FPYVGAGVLASSVGMDKAIMKHVFAHAGLPQCKYEHFLRREWDQNQAEILDRVQTELGYP 65

Query: 128 YVIKPLKGGSSLGIIVIKK----DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
             +KP   GSS+GI   +      Q+I L L       +  ++++E++VD  E+   V+G
Sbjct: 66  CFVKPANLGSSVGISKARNAAELKQAIELAL------QYDRKIIVEEFVDAREVEVSVLG 119

Query: 184 DASLDVTEIAVP-----KSDFYSYELKYSSLNSTHVLPAKIPLD 222
           +   D  + ++P      ++FY Y+ KY    S   +PA  PLD
Sbjct: 120 N---DEPQASIPGEIISSNEFYDYKAKYIDGKSQIAIPA--PLD 158


>gi|156146042|gb|ABU53082.1| D-alanylalanine synthetase [Streptococcus mitis]
 gi|156146046|gb|ABU53084.1| D-alanylalanine synthetase [Streptococcus mitis]
 gi|156146052|gb|ABU53087.1| D-alanylalanine synthetase [Streptococcus mitis]
          Length = 147

 Score = 60.5 bits (145), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/133 (31%), Positives = 69/133 (51%), Gaps = 6/133 (4%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   K +    L      ++ +  ++L+EQ V+  E+  G
Sbjct: 7   EEKLTYPVFTKPSNMGSSVGIS--KSENQEELRQALKLAFQYDSRVLVEQGVNAREIEVG 64

Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           ++G+  +  T   E+ V   DFY Y+ KY     T  +PAKI  D+   +++ A  A +A
Sbjct: 65  LLGNYDVKSTLPGEV-VKDVDFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRA 123

Query: 238 IGCRGISRSDFLF 250
           IG  G+SR DF +
Sbjct: 124 IGGLGLSRCDFFY 136


>gi|156146022|gb|ABU53072.1| D-alanylalanine synthetase [Streptococcus mitis]
          Length = 147

 Score = 60.5 bits (145), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/133 (31%), Positives = 69/133 (51%), Gaps = 6/133 (4%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   K +    L      ++ +  ++L+EQ V+  E+  G
Sbjct: 7   EEKLTYPVFTKPSNMGSSVGIS--KSENQEELRQALKLAFQYDSRVLVEQGVNAREIEVG 64

Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           ++G+  +  T   E+ V   DFY Y+ KY     T  +PAKI  D+   +++ A  A +A
Sbjct: 65  LLGNYDVKSTLPGEV-VKDVDFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRA 123

Query: 238 IGCRGISRSDFLF 250
           IG  G+SR DF +
Sbjct: 124 IGGLGLSRCDFFY 136


>gi|326391834|ref|ZP_08213349.1| D-alanine--D-alanine ligase [Thermoanaerobacter ethanolicus JW 200]
 gi|325992119|gb|EGD50596.1| D-alanine--D-alanine ligase [Thermoanaerobacter ethanolicus JW 200]
          Length = 325

 Score = 60.5 bits (145), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 58/224 (25%), Positives = 106/224 (47%), Gaps = 18/224 (8%)

Query: 70  AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV-NRFTMDSQHLISPPY 128
           A LE+  IPY  SG+    ++ DK   K +V+S G+P    ++  N   + S   +  P 
Sbjct: 80  AFLEVFNIPYVGSGL--DVVATDKRMRKDIVASHGLPTPKYVIAQNPQEIPSVDHLKFPL 137

Query: 129 VIKPLKGGSSLGI----IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
             KP+ G  S GI    I+  KD+ +P  ++   +   G   LIE++++G E+T G++G 
Sbjct: 138 FAKPISGRGSAGIDEENIIYDKDK-LP-QVVSKITDKIGQAALIEEFIEGKEVTVGIIGY 195

Query: 185 AS---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241
                L + E+        +YE K    N     P ++  ++ ++++  A   ++ +  +
Sbjct: 196 KHPQVLPLLEVGYNNVKTNTYEHKMFD-NEIIKCPMEVSKEVEEKIKETALNIYKVLNAK 254

Query: 242 GISRSDFLFDPLSRKV--FWLEINVQPGMTPVSIFPEMAAYAGY 283
             +R D +   LS+    ++LE+N   G+T  S   E   + GY
Sbjct: 255 DFARIDMI---LSKDNVPYFLELNTFAGLTMSSSKGEKHVHHGY 295


>gi|290794219|gb|ADD64431.1| D-alanine:D-alanine ligase [Streptococcus salivarius]
          Length = 160

 Score = 60.1 bits (144), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 37/126 (29%), Positives = 63/126 (50%), Gaps = 4/126 (3%)

Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186
           P  +KP   GSS+GI   K +    L      +  +  ++LIEQ V   E+  G++G+ +
Sbjct: 36  PVFVKPANMGSSVGIS--KAENEAELRAAIDLALKYDSRILIEQGVAAREIEVGILGNTN 93

Query: 187 LDVTEIAVPKSD--FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244
           +  T+      D  FY Y+ KY     T  +PA +P ++  +++  A  A +A+G  G++
Sbjct: 94  VKTTDPGEVVKDVAFYDYQAKYIDNKITMDIPAHVPAEVMTQMRAYAAKAFRALGGCGLA 153

Query: 245 RSDFLF 250
           R DF  
Sbjct: 154 RCDFFL 159


>gi|3821389|emb|CAA13261.1| D-alanine D-alanine ligase [Streptococcus pneumoniae]
 gi|3821421|emb|CAA13277.1| D-alanine D-alanine ligase [Streptococcus pneumoniae]
 gi|148711419|gb|ABR02136.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711475|gb|ABR02164.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711477|gb|ABR02165.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
          Length = 147

 Score = 60.1 bits (144), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 42/133 (31%), Positives = 69/133 (51%), Gaps = 6/133 (4%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   K +    L      ++ +  ++L+EQ V+  E+  G
Sbjct: 7   EEKLAYPVFTKPSNMGSSVGIS--KSENQEELRQALKLAFRYDSRVLVEQGVNAREIEVG 64

Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           ++G+  +  T   E+ V    FY Y+ KY   N T  +PAKI  D+   +++ A  A +A
Sbjct: 65  LLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNNITMDIPAKISDDVVAVMRQNAETAFRA 123

Query: 238 IGCRGISRSDFLF 250
           IG  G+SR DF +
Sbjct: 124 IGGLGLSRCDFFY 136


>gi|183585300|gb|ACC63964.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|183585302|gb|ACC63965.1| D-alanine-D-alanine ligase [Clostridium perfringens]
          Length = 131

 Score = 59.7 bits (143), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 36/135 (26%), Positives = 72/135 (53%), Gaps = 6/135 (4%)

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194
           GGSS+   +++  +++   +L++  ++   +++IE+Y+ G E+TC ++    L V  I  
Sbjct: 2   GGSSVATTLVESKEAVKDAVLEALKYDT--EVMIEEYIKGDEITCPIIDGKMLPVLAIK- 58

Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
           PK  F+    KY    +   +  ++  D++KEV+++A   ++ + C   +R D L     
Sbjct: 59  PKGKFFDIASKYEDGGADEFI-VELNEDLHKEVEKMALETYKLLKCDVYARVDMLVK--D 115

Query: 255 RKVFWLEINVQPGMT 269
              + LE+N  PGMT
Sbjct: 116 NIPYVLEVNTLPGMT 130


>gi|183585296|gb|ACC63962.1| D-alanine-D-alanine ligase [Clostridium perfringens]
          Length = 131

 Score = 59.7 bits (143), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 71/135 (52%), Gaps = 6/135 (4%)

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194
           GGSS+   + +  +++   +L++  ++   +++IE+Y+ G E+TC ++    L V  I  
Sbjct: 2   GGSSVATTLAESKEAVKDAVLEALKYDT--EVMIEEYIKGDEITCPIIDGKMLPVLAIK- 58

Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
           PK  F+    KY    +   +  K+  D++KEV+++A   ++ + C   +R D L     
Sbjct: 59  PKGKFFDIASKYEDGGADEFI-VKLNEDLHKEVEKMALETYKLLKCDVYARVDMLVK--D 115

Query: 255 RKVFWLEINVQPGMT 269
              + LE+N  PGMT
Sbjct: 116 NIPYVLEVNTLPGMT 130


>gi|156146812|gb|ABU53418.1| D-alanylalanine synthetase [Streptococcus oralis]
          Length = 147

 Score = 59.7 bits (143), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 42/133 (31%), Positives = 68/133 (51%), Gaps = 6/133 (4%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   K +    L      ++ +  ++L+EQ V+  E+  G
Sbjct: 7   EEKLTYPVFTKPSNMGSSVGIS--KSENHEELRQALELAFQYDSRVLVEQGVNAREIEVG 64

Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           ++G+  +  T   E+ V    FY Y+ KY     T  +PAKI  D+   ++R A  A +A
Sbjct: 65  LLGNYDVKSTFPGEV-VKDVAFYDYDAKYIDNKITMDIPAKISEDVVAVMRRNAETAFRA 123

Query: 238 IGCRGISRSDFLF 250
           IG  G+SR DF +
Sbjct: 124 IGGLGLSRCDFFY 136


>gi|255940354|ref|XP_002560946.1| Pc16g06100 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211585569|emb|CAP93280.1| Pc16g06100 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 363

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 91/332 (27%), Positives = 135/332 (40%), Gaps = 47/332 (14%)

Query: 2   AVLMGGISSEREVSLSSG---KACASALEDAGFKVSQIDVDRSVGLVLA---HLKPDLAF 55
           A L  G S E+  +L       A  +ALE  G  V+ +    ++  +LA   H   DL F
Sbjct: 20  AYLSHGYSEEQCAALPHRGEIDAVMAALERLGHHVTLVSGIEALVQLLAAGKHNGWDLVF 79

Query: 56  NVLHGNFG--EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-SIL 112
           N+  G  G   +  V A+LE  ++PYT S     AL  +K  +K ++    +P  P S++
Sbjct: 80  NMAQGFHGSARESQVPALLEAYQVPYTFSDAATMALCQNKQVTKTILDRHMIPNAPFSVI 139

Query: 113 -----VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN-----H 162
                V  F      L   P  +KP+  GSS GI    K +  P D L+ + W       
Sbjct: 140 PMLDVVADFPKGFAALPPYPLFVKPVTEGSSKGIDGFNKVKE-PAD-LKPAVWELVRKFP 197

Query: 163 GDQLLIEQYVDGIELTCGVMGDASLD--------VTEIAVPKSDFYSYE----LKYSSLN 210
           G  +L+E ++ G E T  ++G             +   +   S+   Y     L ++S +
Sbjct: 198 GQDILVESFLSGREFTVSILGTGPHSRVIGIREHIWRTSPEHSNTNGYHSDGSLDFASRD 257

Query: 211 STHVLPAKIPL--DIY-------KEVQRLAFLAHQAIGCRGISRSDFLFD---PLSRKVF 258
           S      K+ L  D +       K   ++A    +   CR   R D  FD   P S    
Sbjct: 258 SKSSKGEKMLLYNDSHDMDEPQIKATCQVALQTWKVFNCRDGGRVDIRFDSDEPGSTPNV 317

Query: 259 WLEINVQPGMTP-VSIFPEMAAYAGYSFRELL 289
            LE+N   G+ P  S  P  A   G SF ELL
Sbjct: 318 -LEVNPIAGLLPGHSPLPATAKMNGLSFEELL 348


>gi|6434093|emb|CAB60643.1| D-ala,D-ala ligase [Streptococcus pneumoniae]
 gi|6634603|emb|CAB64492.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae]
 gi|48525842|gb|AAT45131.1| D-alanine D-alanine ligase [Streptococcus mitis]
 gi|148711701|gb|ABR02277.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711745|gb|ABR02299.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711747|gb|ABR02300.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711751|gb|ABR02302.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
          Length = 147

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 42/133 (31%), Positives = 68/133 (51%), Gaps = 6/133 (4%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   K +    L      ++ +  ++L+EQ V+  E+  G
Sbjct: 7   EEKLTYPVFTKPSNMGSSVGIS--KSENQEELRQALELAFQYDSRVLVEQGVNAREIEVG 64

Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           ++G+  +  T   E+ V    FY Y+ KY     T  +PAKI  D+   ++R A  A +A
Sbjct: 65  LLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRRNAETAFRA 123

Query: 238 IGCRGISRSDFLF 250
           IG  G+SR DF +
Sbjct: 124 IGGLGLSRCDFFY 136


>gi|183585304|gb|ACC63966.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|183585306|gb|ACC63967.1| D-alanine-D-alanine ligase [Clostridium perfringens]
          Length = 131

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 36/135 (26%), Positives = 72/135 (53%), Gaps = 6/135 (4%)

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194
           GGSS+   +++  +++   +L++  ++   +++IE+Y+ G E+TC ++    L V  I  
Sbjct: 2   GGSSVATTLVESKEAVKDAVLEALKYDT--EVMIEEYIKGDEITCPIIDGKMLPVLAIK- 58

Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
           PK  F+    KY    +   +  ++  D++KEV+++A   ++ + C   +R D L     
Sbjct: 59  PKGKFFDIASKYEDGGADEFI-VELNEDLHKEVEKMALETYKLLKCDVYARVDMLV--RD 115

Query: 255 RKVFWLEINVQPGMT 269
              + LE+N  PGMT
Sbjct: 116 NIPYVLEVNTLPGMT 130


>gi|1857218|gb|AAB49635.1| vancomycin resistance protein [Enterococcus casseliflavus]
          Length = 126

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 38/124 (30%), Positives = 63/124 (50%), Gaps = 10/124 (8%)

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP------ 126
           EL+++PY   G+ ASAL M+K    Q   + GV   P+IL+     + Q  I        
Sbjct: 1   ELMKLPYVGCGVAASALCMNKWLLHQAAEAIGVQSAPTILLTN-QANQQDQIEAFIQTHG 59

Query: 127 -PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            P   KP + GSS GI  +   + I   L    ++ +   +L+++ + G+E+ CG++G+ 
Sbjct: 60  FPVFFKPNEAGSSKGITKVTCVEEIASAL--KEAFTYCSAVLLQKNIAGVEIGCGILGND 117

Query: 186 SLDV 189
           SL V
Sbjct: 118 SLTV 121


>gi|156146866|gb|ABU53445.1| D-alanylalanine synthetase [Streptococcus oralis]
          Length = 147

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 42/133 (31%), Positives = 68/133 (51%), Gaps = 6/133 (4%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   K +    L      ++ +  ++L+EQ V+  E+  G
Sbjct: 7   EEKLTYPVFTKPSNMGSSVGIS--KSENQDELRQALELAFQYDSRVLVEQGVNAREIEVG 64

Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           ++G+  +  T   E+ V    FY Y+ KY     T  +PAKI  D+   ++R A  A +A
Sbjct: 65  LLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRRNAETAFRA 123

Query: 238 IGCRGISRSDFLF 250
           IG  G+SR DF +
Sbjct: 124 IGGLGLSRCDFFY 136


>gi|156146056|gb|ABU53089.1| D-alanylalanine synthetase [Streptococcus mitis]
          Length = 147

 Score = 59.3 bits (142), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 42/133 (31%), Positives = 68/133 (51%), Gaps = 6/133 (4%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   K +    L      ++ +  ++L+EQ V+  E+  G
Sbjct: 7   EEKLTYPVFTKPSNMGSSVGIS--KSENQEELRQALELAFQYDSRVLVEQGVNAREIEVG 64

Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           ++G+  +  T   E+ V    FY Y+ KY     T  +PAKI  D+   ++R A  A +A
Sbjct: 65  LLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDIPAKISDDVIAVMRRNAETAFRA 123

Query: 238 IGCRGISRSDFLF 250
           IG  G+SR DF +
Sbjct: 124 IGGLGLSRCDFFY 136


>gi|148711707|gb|ABR02280.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711753|gb|ABR02303.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
          Length = 147

 Score = 59.3 bits (142), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 42/133 (31%), Positives = 69/133 (51%), Gaps = 6/133 (4%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   K +    L      ++ +  ++L+EQ V+  E+  G
Sbjct: 7   EEKLAYPVFTKPSNMGSSVGIS--KPENQEELRQALKLAFRYDSRVLVEQGVNAREIEVG 64

Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           ++G+  +  T   E+ V    FY Y+ KY   N T  +PAKI  D+   +++ A  A +A
Sbjct: 65  LLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNNITMDIPAKISDDVVAVMRQNAETAFRA 123

Query: 238 IGCRGISRSDFLF 250
           IG  G+SR DF +
Sbjct: 124 IGGLGLSRCDFFY 136


>gi|156146054|gb|ABU53088.1| D-alanylalanine synthetase [Streptococcus mitis]
          Length = 147

 Score = 59.3 bits (142), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 69/133 (51%), Gaps = 6/133 (4%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   +  + +   L    ++ +  ++L+EQ V+  E+  G
Sbjct: 7   EEKLAYPVFTKPSNMGSSVGISKSENQEELRQSL--KLAFQYDSRVLVEQGVNAREIEVG 64

Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           ++G+  +  T   E+ V    FY Y+ KY     T  +PAKI  D+   ++R A  A +A
Sbjct: 65  LLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRRNAETAFRA 123

Query: 238 IGCRGISRSDFLF 250
           IG  G+SR DF +
Sbjct: 124 IGGLGLSRCDFFY 136


>gi|156146000|gb|ABU53061.1| D-alanylalanine synthetase [Streptococcus mitis]
          Length = 147

 Score = 59.3 bits (142), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 42/133 (31%), Positives = 68/133 (51%), Gaps = 6/133 (4%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   K +    L      ++ +  ++L+EQ V+  E+  G
Sbjct: 7   EEKLAYPVFTKPSNMGSSVGIS--KSENQEELRQALKLAFQYDSRVLVEQGVNAREIEVG 64

Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           ++G+  +  T   E+ V    FY Y+ KY     T  +PAKI  D+   ++R A  A +A
Sbjct: 65  LLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRRNAETAFRA 123

Query: 238 IGCRGISRSDFLF 250
           IG  G+SR DF +
Sbjct: 124 IGGLGLSRCDFFY 136


>gi|156146826|gb|ABU53425.1| D-alanylalanine synthetase [Streptococcus oralis]
          Length = 147

 Score = 59.3 bits (142), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 42/135 (31%), Positives = 72/135 (53%), Gaps = 10/135 (7%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS--SWNHGDQLLIEQYVDGIELT 178
           +  ++ P   KP   GSS+GI   +  +    +LLQ+   ++ +  ++L+EQ V+  E+ 
Sbjct: 7   EEKLTYPVFTKPSNMGSSVGISKSENQE----ELLQALELAFQYDSRVLVEQGVNAREIE 62

Query: 179 CGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
            G++G+  +  T   E+ V    FY Y+ KY     T  +PA+I  D+   ++R A  A 
Sbjct: 63  VGLLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDIPARISEDVVAVMRRNAETAF 121

Query: 236 QAIGCRGISRSDFLF 250
           +AIG  G+SR DF +
Sbjct: 122 RAIGGLGLSRCDFFY 136


>gi|156146810|gb|ABU53417.1| D-alanylalanine synthetase [Streptococcus oralis]
 gi|156146814|gb|ABU53419.1| D-alanylalanine synthetase [Streptococcus oralis]
          Length = 147

 Score = 59.3 bits (142), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 42/133 (31%), Positives = 68/133 (51%), Gaps = 6/133 (4%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   K +    L      ++ +  ++L+EQ V+  E+  G
Sbjct: 7   EKKLTYPVFTKPSNMGSSVGIS--KSENQEELRQALELAFQYDSRVLVEQGVNAREIEVG 64

Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           ++G+  +  T   E+ V    FY Y+ KY     T  +PAKI  D+   ++R A  A +A
Sbjct: 65  LLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRRNAETAFRA 123

Query: 238 IGCRGISRSDFLF 250
           IG  G+SR DF +
Sbjct: 124 IGGLGLSRCDFFY 136


>gi|48525852|gb|AAT45136.1| D-alanine D-alanine ligase [Streptococcus mitis]
          Length = 147

 Score = 59.3 bits (142), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 42/133 (31%), Positives = 68/133 (51%), Gaps = 6/133 (4%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   K +    L      ++ +  ++L+EQ V+  E+  G
Sbjct: 7   EEKLTYPVFTKPSNMGSSVGIS--KSENQEELRQALELAFQYDSRVLVEQGVNAREIEVG 64

Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           ++G+  +  T   E+ V    FY Y+ KY     T  +PAKI  D+   ++R A  A +A
Sbjct: 65  LLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDIPAKISDDVVAIMRRNAETAFRA 123

Query: 238 IGCRGISRSDFLF 250
           IG  G+SR DF +
Sbjct: 124 IGGLGLSRCDFFY 136


>gi|255029325|ref|ZP_05301276.1| D-alanyl-alanine synthetase A [Listeria monocytogenes LO28]
          Length = 170

 Score = 59.3 bits (142), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 36/146 (24%), Positives = 73/146 (50%), Gaps = 12/146 (8%)

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK--------SDFYSYELKYSS 208
           + ++ +  ++++EQ V   E+  GV+G+   D    +VP         + FY Y+ KY  
Sbjct: 11  TEAFLYDRRVVVEQGVVAREIEMGVLGN---DTPVCSVPGEILPEGAVATFYDYKAKYQD 67

Query: 209 LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268
            N+  ++P ++  +I ++++  A  A   +   G+ R+DF       ++F  E+N  PG 
Sbjct: 68  NNTALIIPTEVDPEILEQMKEYAIQAFLGLDASGLVRADFFLTE-DNQLFLNEVNTMPGF 126

Query: 269 TPVSIFPEMAAYAGYSFRELLLWMVE 294
           TP S++P +    G  +  L+  +V+
Sbjct: 127 TPYSMYPLLWQETGLPYGALIERLVD 152


>gi|149192572|ref|ZP_01870736.1| D-alanylalanine synthetase [Vibrio shilonii AK1]
 gi|148833591|gb|EDL50664.1| D-alanylalanine synthetase [Vibrio shilonii AK1]
          Length = 117

 Score = 59.3 bits (142), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 35/108 (32%), Positives = 55/108 (50%), Gaps = 3/108 (2%)

Query: 191 EIAVPKSDFYSYELKYSS--LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           EI  P   FY+Y+ KYSS   ++T V  + +  +    +   A      +  R +SR DF
Sbjct: 9   EIIAPDGAFYTYDEKYSSDSHSTTTVEASDLTDEQLNIIHTSAVKVFTQMKLRHLSRIDF 68

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                  K++  E+N  PGMTP+S+FP+M  ++G  F E L   +E +
Sbjct: 69  FLTE-DNKIYLNEVNTFPGMTPISMFPKMVEHSGLEFSEFLSDCIESS 115


>gi|148711777|gb|ABR02315.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711813|gb|ABR02333.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711817|gb|ABR02335.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
          Length = 147

 Score = 58.9 bits (141), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 42/133 (31%), Positives = 68/133 (51%), Gaps = 6/133 (4%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   K +    L      ++ +  ++L+EQ VD  E+  G
Sbjct: 7   EEKLTYPVFTKPSNMGSSVGIS--KSENQEELRQALKLAFQYDSRVLVEQGVDAREIEVG 64

Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           ++G+  +  T   E+ V    FY Y+ KY     T  +PAKI  D+   +++ A  A +A
Sbjct: 65  LLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRA 123

Query: 238 IGCRGISRSDFLF 250
           IG  G+SR DF +
Sbjct: 124 IGGLGLSRCDFFY 136


>gi|190894037|ref|YP_001984331.1| putative D-alanine-D-alanine ligase protein [Rhizobium etli CIAT
           652]
 gi|190699698|gb|ACE93781.1| putative D-alanine-D-alanine ligase protein [Rhizobium etli CIAT
           652]
          Length = 397

 Score = 58.9 bits (141), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 76/150 (50%), Gaps = 8/150 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + +L GG S+ER  SL +       L++    V  ++ +    L+ A L+ D   +V++G
Sbjct: 215 LVLLAGGSSTERAASLETKDVLLPHLQNLCRSVEFVEPNDVEQLLRAVLQCDFVLSVVYG 274

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV------N 114
             GEDG +Q  L++L +PY+    L SA+ M+K     ++   G PV    LV       
Sbjct: 275 AGGEDGTMQGFLDILRVPYSGPSTLPSAIGMNKDIFVSLLRDWGYPVPRGRLVAALGDPR 334

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
            + ++ Q   S   V+KP+  GSS+GI ++
Sbjct: 335 SWPLELQQ--SQVLVLKPIGEGSSIGIKML 362


>gi|148711807|gb|ABR02330.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
          Length = 147

 Score = 58.9 bits (141), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 42/133 (31%), Positives = 68/133 (51%), Gaps = 6/133 (4%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   K +    L      ++ +  ++L+EQ VD  E+  G
Sbjct: 7   EEKLTYPVFTKPSNMGSSVGIS--KSENQEELRQALKLAFQYDSRVLVEQGVDAREIEVG 64

Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           ++G+  +  T   E+ V    FY Y+ KY     T  +PAKI  D+   +++ A  A +A
Sbjct: 65  LLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRA 123

Query: 238 IGCRGISRSDFLF 250
           IG  G+SR DF +
Sbjct: 124 IGGLGLSRCDFFY 136


>gi|49183263|ref|YP_026515.1| D-alanine-D-alanine ligase, N-terminus [Bacillus anthracis str.
           Sterne]
 gi|227812912|ref|YP_002812921.1| putative D-ala D-ala ligase [Bacillus anthracis str. CDC 684]
 gi|254686586|ref|ZP_05150445.1| putative D-ala D-ala ligase [Bacillus anthracis str. CNEVA-9066]
 gi|254734936|ref|ZP_05192648.1| putative D-ala D-ala ligase [Bacillus anthracis str. Western North
           America USA6153]
 gi|254739721|ref|ZP_05197414.1| putative D-ala D-ala ligase [Bacillus anthracis str. Kruger B]
 gi|254754908|ref|ZP_05206943.1| putative D-ala D-ala ligase [Bacillus anthracis str. Vollum]
 gi|254756951|ref|ZP_05208979.1| putative D-ala D-ala ligase [Bacillus anthracis str. Australia 94]
 gi|49177190|gb|AAT52566.1| D-alanine-D-alanine ligase, N-terminus [Bacillus anthracis str.
           Sterne]
 gi|227007613|gb|ACP17356.1| putative D-ala D-ala ligase [Bacillus anthracis str. CDC 684]
          Length = 158

 Score = 58.9 bits (141), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 27/54 (50%), Positives = 37/54 (68%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV 105
           D+ F +LHG  GEDG VQ +LEL+ IPY  +G+LASA  MDK+  K + +  G+
Sbjct: 95  DVIFPLLHGPNGEDGTVQGLLELMNIPYVGNGVLASAAGMDKVVMKNIFAEAGL 148


>gi|65317671|ref|ZP_00390630.1| COG1181: D-alanine-D-alanine ligase and related ATP-grasp enzymes
           [Bacillus anthracis str. A2012]
          Length = 161

 Score = 58.9 bits (141), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 27/54 (50%), Positives = 37/54 (68%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV 105
           D+ F +LHG  GEDG VQ +LEL+ IPY  +G+LASA  MDK+  K + +  G+
Sbjct: 98  DVIFPLLHGPNGEDGTVQGLLELMNIPYVGNGVLASAAGMDKVVMKNIFAEAGL 151


>gi|156146872|gb|ABU53448.1| D-alanylalanine synthetase [Streptococcus oralis]
          Length = 147

 Score = 58.9 bits (141), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 42/133 (31%), Positives = 68/133 (51%), Gaps = 6/133 (4%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   K +    L      ++ +  ++L+EQ V+  E+  G
Sbjct: 7   EEKLTYPVFTKPSNMGSSVGIS--KSENHEELRQALELAFQYDSRVLVEQGVNAREIEVG 64

Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           ++G+  +  T   E+ V    FY Y+ KY     T  +PAKI  D+   ++R A  A +A
Sbjct: 65  LLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDIPAKISDDVVAIMRRNAETAFRA 123

Query: 238 IGCRGISRSDFLF 250
           IG  G+SR DF +
Sbjct: 124 IGGLGLSRCDFFY 136


>gi|148711767|gb|ABR02310.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
          Length = 147

 Score = 58.9 bits (141), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 70/133 (52%), Gaps = 6/133 (4%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   K +    L      ++ +  ++L+EQ V+  E+  G
Sbjct: 7   EEKLTYPVFTKPSNMGSSVGIS--KSENQEELRQALELAFRYDSRVLVEQGVNAREIEVG 64

Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           ++G+ ++  T   E+ V    FY Y+ KY     T  +PAKI  D+   +++ A +A +A
Sbjct: 65  LLGNYNVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDIPAKISDDVIAVMRQNAEIAFRA 123

Query: 238 IGCRGISRSDFLF 250
           IG  G+SR DF +
Sbjct: 124 IGGLGLSRCDFFY 136


>gi|156146894|gb|ABU53459.1| D-alanylalanine synthetase [Streptococcus oralis]
          Length = 147

 Score = 58.9 bits (141), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 42/133 (31%), Positives = 68/133 (51%), Gaps = 6/133 (4%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   K +    L      ++ +  ++L+EQ V+  E+  G
Sbjct: 7   EEKLTYPVFTKPSNMGSSVGIS--KSENHEELRQALELAFQYDSRVLVEQGVNAREIEVG 64

Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           ++G+  +  T   E+ V    FY Y+ KY     T  +PAKI  D+   ++R A  A +A
Sbjct: 65  LLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRRNAETAFRA 123

Query: 238 IGCRGISRSDFLF 250
           IG  G+SR DF +
Sbjct: 124 IGGIGLSRCDFFY 136


>gi|58045588|gb|AAW65102.1| vancomycin resistance protein [Enterococcus gallinarum]
          Length = 128

 Score = 58.9 bits (141), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 63/118 (53%), Gaps = 8/118 (6%)

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIK 131
           PY    + ASAL M+K    Q+  + G+   P++L++R+  D   +         P  IK
Sbjct: 1   PYVGCHVAASALCMNKWLLHQLADTMGIASAPTLLLSRYENDPATIDRFIQDHGFPIFIK 60

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           P + GSS GI  +    ++   L  ++++ +G  +LI++ + GIE+ CG++G+  L +
Sbjct: 61  PNEAGSSKGITKVTDKTALQSAL--TTAFAYGSTVLIQKAIAGIEIGCGILGNEQLTI 116


>gi|156146884|gb|ABU53454.1| D-alanylalanine synthetase [Streptococcus oralis]
          Length = 147

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/127 (33%), Positives = 65/127 (51%), Gaps = 6/127 (4%)

Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186
           P   KP   GSS+GI   K +    L      ++ +  ++L+EQ V+  E+  G++G+  
Sbjct: 13  PVFTKPSNMGSSVGIS--KSENKEELHQALELAFKYDSRVLVEQGVNAREIEVGLLGNYD 70

Query: 187 LDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           +  T   E+ V    FY YE KY     T  +PAKI  ++   ++R A  A +AIG  G+
Sbjct: 71  VKSTLPGEV-VKDVAFYDYEAKYIDNKITMDIPAKISDNVVAVMRRNAEAAFRAIGGLGL 129

Query: 244 SRSDFLF 250
           SR DF +
Sbjct: 130 SRCDFFY 136


>gi|156146824|gb|ABU53424.1| D-alanylalanine synthetase [Streptococcus oralis]
 gi|156146864|gb|ABU53444.1| D-alanylalanine synthetase [Streptococcus oralis]
          Length = 147

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 68/133 (51%), Gaps = 6/133 (4%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   K +    L      ++ +  ++L+EQ V+  E+  G
Sbjct: 7   EEKLTYPVFTKPSNMGSSVGIS--KSENQEELRQALELAFQYDSRVLVEQGVNAREIEVG 64

Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           ++G+  +  T   E+ V    FY Y+ KY     T  +PA+I  D+   ++R A  A +A
Sbjct: 65  LLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDIPARISDDVVAVMRRNAETAFRA 123

Query: 238 IGCRGISRSDFLF 250
           IG  G+SR DF +
Sbjct: 124 IGGLGLSRCDFFY 136


>gi|58045584|gb|AAW65100.1| vancomycin resistance protein [Enterococcus gallinarum]
          Length = 135

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/134 (28%), Positives = 72/134 (53%), Gaps = 10/134 (7%)

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI------SPPYVIKPLKGGSSLG 140
           SAL M+K    Q+  + G+   P++L++R+  D   +         P  IKP + GSS G
Sbjct: 1   SALCMNKWLLHQLADTMGIASAPTLLLSRYENDPATIDRFIQDHGFPIFIKPNEAGSSKG 60

Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI-AVPKSD- 198
           I  +    ++   L  ++++ +G  +LI++ + GIE+ CG++G+  L +    A+   D 
Sbjct: 61  ITKVTDKTALQSAL--TTAFAYGSTVLIQKAIAGIEIGCGILGNEQLTIGACDAISLVDG 118

Query: 199 FYSYELKYSSLNST 212
           F+ +E KY  +++T
Sbjct: 119 FFDFEEKYQLISAT 132


>gi|159029118|emb|CAO90107.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 363

 Score = 58.2 bits (139), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 76/245 (31%), Positives = 125/245 (51%), Gaps = 23/245 (9%)

Query: 69  QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPY 128
           +A+ +LL+IPY  +     AL+ DK ++K VVS+ GV V    +++R    S   +S P 
Sbjct: 100 RALFDLLKIPYVGNSAELMALAADKAKAKAVVSAAGVTVPAGKVLHRGDCLS---VSRPS 156

Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDAS- 186
           +IKP    +SLG+ ++   ++   D   ++++ + D++L+E++++ G E+ CGV+  A  
Sbjct: 157 IIKPNHSDNSLGLSLVT--ETTDGDAAFATAFEYADEVLVEEFIELGREVRCGVIVQAGE 214

Query: 187 ---LDVTEIAV-PKSD---FYSYELKYS---SLNSTHVLPAKI----PLD-IYKEVQRLA 231
              L + E AV P++     Y+ +LK S   SL+       K     P D + + V  +A
Sbjct: 215 LVCLPLEEYAVNPETHPIRTYADKLKQSQDGSLDCAAKEKTKAWIVDPRDPVTQRVWAIA 274

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
              H A+GCR  S  DF  DP  +  F LE  +       S+   MA  AG S  +L   
Sbjct: 275 KQCHVALGCRHYSLFDFRIDPHGQPWF-LEAGLYCSFAQKSVISMMAQAAGISLTDLFQN 333

Query: 292 MVEDA 296
           MV+ A
Sbjct: 334 MVQMA 338


>gi|156146006|gb|ABU53064.1| D-alanylalanine synthetase [Streptococcus mitis]
          Length = 147

 Score = 58.2 bits (139), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 69/133 (51%), Gaps = 6/133 (4%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   K +    L      ++ +  ++L+EQ V+  E+  G
Sbjct: 7   EEKLTYPVFTKPSNMGSSVGIS--KSENQEELRQALKLAFQYDSRILVEQGVNAREIEVG 64

Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           ++G+ ++  T   E+ V    FY Y+ KY     T  +PAKI  D+   +++ A  A +A
Sbjct: 65  LLGNYNVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRA 123

Query: 238 IGCRGISRSDFLF 250
           IG  G+SR DF +
Sbjct: 124 IGGLGLSRCDFFY 136


>gi|124358352|gb|ABN05627.1| vancomycin resistance protein A [Enterococcus faecium]
          Length = 131

 Score = 58.2 bits (139), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/126 (30%), Positives = 65/126 (51%), Gaps = 9/126 (7%)

Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD-A 185
           P  +KP + GSS G  V K + +  LD    S+  +  ++LIEQ V G E+ C V+G+ A
Sbjct: 8   PVFVKPARSGSSFG--VKKVNSADELDYAIESARQYDSKILIEQAVSGCEVGCAVLGNSA 65

Query: 186 SLDVTEIAVPKSDF------YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
           +L V E+   +  +         E +  S N+   +PA +  +    +Q  A   ++A+G
Sbjct: 66  ALVVGEVDQIRLQYGIFRIHQEVEPEKGSENAVITVPADLSAEERGRIQETAKKIYKALG 125

Query: 240 CRGISR 245
           CRG++R
Sbjct: 126 CRGLAR 131


>gi|148711613|gb|ABR02233.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
          Length = 147

 Score = 58.2 bits (139), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/133 (30%), Positives = 69/133 (51%), Gaps = 6/133 (4%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   +  + +   L    ++ +  ++L+EQ V+  E+  G
Sbjct: 7   EEKLTYPVFTKPSNMGSSVGISKSENQEELRQSL--KLAFQYDSRVLVEQGVNAREIEVG 64

Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           ++G+  +  T   E+ V    FY Y+ KY     T  +PAKI  D+   ++R +  A +A
Sbjct: 65  LLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRRNSETAFRA 123

Query: 238 IGCRGISRSDFLF 250
           IG  G+SR DF +
Sbjct: 124 IGGLGLSRCDFFY 136


>gi|2766005|emb|CAB16964.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae]
 gi|2766011|emb|CAB16967.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae]
 gi|2766081|emb|CAB17002.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae]
 gi|2766129|emb|CAB17026.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae]
 gi|3821403|emb|CAA13268.1| D-alanine D-alanine ligase [Streptococcus pneumoniae]
          Length = 147

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/127 (32%), Positives = 66/127 (51%), Gaps = 6/127 (4%)

Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186
           P   KP   GSS+GI   K +    L      ++ +  ++L+EQ V+  E+  G++G++ 
Sbjct: 13  PVFTKPSNMGSSVGIS--KSENQEELRQALKLAFRYDSRVLVEQGVNAREIEVGLLGNSD 70

Query: 187 LDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           +  T   E+ V    FY Y+ KY     T  +PAKI  D+   +++ A  A +AIG  G+
Sbjct: 71  VKSTLPGEV-VKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAIGGLGL 129

Query: 244 SRSDFLF 250
           SR DF +
Sbjct: 130 SRCDFFY 136


>gi|156146904|gb|ABU53464.1| D-alanylalanine synthetase [Streptococcus viridans]
          Length = 147

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/133 (31%), Positives = 67/133 (50%), Gaps = 6/133 (4%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   K +    L      ++ +  ++L+EQ V   E+  G
Sbjct: 7   EEKLTYPVFTKPSNMGSSVGIS--KSENKEELHQALELAFKYDSRVLVEQGVSAREIEVG 64

Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           ++G+  +  T   E+ V    FY YE KY     T  +PAKI  D+   +++ A  A +A
Sbjct: 65  LLGNYDVKSTLPGEV-VKDVAFYDYEAKYIDNKITMDIPAKISDDVVAIMRKNAETAFRA 123

Query: 238 IGCRGISRSDFLF 250
           IG  G+SR DF +
Sbjct: 124 IGGLGLSRCDFFY 136


>gi|6634607|emb|CAB64494.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae]
          Length = 147

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 69/133 (51%), Gaps = 6/133 (4%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   K +    L      ++ +  ++L+EQ V+  E+  G
Sbjct: 7   EEKLTYPVFTKPSNMGSSVGIS--KSENQEELRQALKLAFQYDSRVLVEQGVNAREIEVG 64

Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           ++G+ ++  T   E+ V    FY Y+ KY     T  +PAKI  D+   +++ A  A +A
Sbjct: 65  LLGNYNVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRA 123

Query: 238 IGCRGISRSDFLF 250
           IG  G+SR DF +
Sbjct: 124 IGGLGLSRCDFFY 136


>gi|2766007|emb|CAB16965.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae]
 gi|2766109|emb|CAB17016.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae]
 gi|3821395|emb|CAA13264.1| D-alanine D-alanine ligase [Streptococcus pneumoniae]
 gi|148711443|gb|ABR02148.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711447|gb|ABR02150.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711463|gb|ABR02158.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711479|gb|ABR02166.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
          Length = 147

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/127 (32%), Positives = 66/127 (51%), Gaps = 6/127 (4%)

Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186
           P   KP   GSS+GI   K +    L      ++ +  ++L+EQ V+  E+  G++G+  
Sbjct: 13  PVFTKPSNMGSSVGIS--KSENQEELRQALKLAFRYDSRVLVEQGVNAREIEVGLLGNYD 70

Query: 187 LDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           +  T   E+ V    FY Y+ KY     T  +PAKI  D+   +++ A +A +AIG  G+
Sbjct: 71  VKSTLPGEV-VKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAEIAFRAIGGLGL 129

Query: 244 SRSDFLF 250
           SR DF +
Sbjct: 130 SRCDFFY 136


>gi|148711765|gb|ABR02309.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
          Length = 147

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 68/133 (51%), Gaps = 6/133 (4%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   K +    L      ++ +  ++L+EQ V+  E+  G
Sbjct: 7   EEKLTYPVFTKPSNMGSSVGIS--KSENQEELRQALELAFQYDSRVLVEQGVNAREIEVG 64

Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           ++G+  +  T   E+ V    FY Y+ KY     T  +PAKI  D+   +++ A  A +A
Sbjct: 65  LLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKVTMDIPAKISDDVVAVMRQNAETAFRA 123

Query: 238 IGCRGISRSDFLF 250
           IG  G+SR DF +
Sbjct: 124 IGGLGLSRCDFFY 136


>gi|148711761|gb|ABR02307.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711823|gb|ABR02338.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
          Length = 147

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 69/133 (51%), Gaps = 6/133 (4%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   K +    L      ++ +  ++L+EQ V+  E+  G
Sbjct: 7   EEKLTYPVFTKPSNMGSSVGIS--KSENQEELRQALKLAFQYDSRVLVEQGVNAREIEVG 64

Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           ++G+ ++  T   E+ V    FY Y+ KY     T  +PAKI  D+   +++ A  A +A
Sbjct: 65  LLGNYNVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDIPAKINDDVVAVMRQNAETAFRA 123

Query: 238 IGCRGISRSDFLF 250
           IG  G+SR DF +
Sbjct: 124 IGGLGLSRCDFFY 136


>gi|3821391|emb|CAA13262.1| D-alanine D-alanine ligase [Streptococcus pneumoniae]
 gi|148711429|gb|ABR02141.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711441|gb|ABR02147.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711445|gb|ABR02149.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
          Length = 147

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 68/133 (51%), Gaps = 6/133 (4%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   K +    L      ++ +  ++L+EQ V+  E+  G
Sbjct: 7   EEKLAYPVFTKPSNMGSSVGIS--KSENQEELRQALELAFRYDSRVLVEQGVNAREIEVG 64

Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           ++G+  +  T   E+ V    FY Y+ KY     T  +PAKI  D+   +++ A  A +A
Sbjct: 65  LLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKVTMDIPAKISDDVVAVMRQNAETAFRA 123

Query: 238 IGCRGISRSDFLF 250
           IG  G+SR DF +
Sbjct: 124 IGGLGLSRCDFFY 136


>gi|224383912|gb|ACN42752.1| Ddl [Oenococcus oeni]
          Length = 165

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/102 (32%), Positives = 56/102 (54%), Gaps = 6/102 (5%)

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV 105
           + +LK D+ F  +HGN GEDG +  +  L+ IPY  SG+ A A+S DK+ +K++++  G+
Sbjct: 45  IRNLKLDVLFPSVHGNLGEDGTLAGLFRLMNIPYVGSGLRAHAISFDKVITKELMTVNGI 104

Query: 106 PVCPSILV-----NRFTMDS-QHLISPPYVIKPLKGGSSLGI 141
                I++     N+   DS    +     +K    GSS+G+
Sbjct: 105 RNTKYIVIFQNDKNKPDWDSVSKQLGEVVFVKAANQGSSVGV 146


>gi|224383914|gb|ACN42753.1| Ddl [Oenococcus oeni]
 gi|224383916|gb|ACN42754.1| Ddl [Oenococcus oeni]
          Length = 165

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/102 (32%), Positives = 56/102 (54%), Gaps = 6/102 (5%)

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV 105
           + +LK D+ F  +HGN GEDG +  +  L+ IPY  SG+ A A+S DK+ +K++++  G+
Sbjct: 45  IRNLKLDVLFPSVHGNLGEDGTLAGLFRLMNIPYVGSGLRAHAISFDKVITKELMTVNGI 104

Query: 106 PVCPSILV-----NRFTMDS-QHLISPPYVIKPLKGGSSLGI 141
                I++     N+   DS    +     +K    GSS+G+
Sbjct: 105 RNTKYIVIFQNDKNKPDWDSVSKQLGEVVFVKAANQGSSVGV 146


>gi|2766019|emb|CAB16971.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae]
 gi|2766021|emb|CAB16972.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae]
 gi|2766023|emb|CAB16973.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae]
 gi|2766025|emb|CAB16974.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae]
 gi|2766027|emb|CAB16975.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae]
 gi|2766029|emb|CAB16976.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae]
 gi|2766031|emb|CAB16977.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae]
 gi|2766033|emb|CAB16978.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae]
 gi|2766035|emb|CAB16979.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae]
 gi|2766037|emb|CAB16980.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae]
 gi|2766039|emb|CAB16981.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae]
 gi|2766043|emb|CAB16983.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae]
 gi|2766045|emb|CAB16984.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae]
 gi|2766047|emb|CAB16985.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae]
 gi|2766049|emb|CAB16986.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae]
 gi|2766051|emb|CAB16987.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae]
 gi|2766053|emb|CAB16988.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae]
 gi|2766085|emb|CAB17004.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae]
 gi|2766089|emb|CAB17006.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae]
 gi|2766091|emb|CAB17007.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae]
 gi|2766093|emb|CAB17008.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae]
 gi|2766095|emb|CAB17009.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae]
 gi|2766097|emb|CAB17010.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae]
 gi|2766099|emb|CAB17011.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae]
 gi|2766101|emb|CAB17012.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae]
 gi|2766103|emb|CAB17013.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae]
 gi|2766105|emb|CAB17014.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae]
 gi|2766107|emb|CAB17015.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae]
 gi|2766111|emb|CAB17017.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae]
 gi|2766117|emb|CAB17020.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae]
 gi|2766121|emb|CAB17022.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae]
 gi|2766123|emb|CAB17023.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae]
 gi|2766125|emb|CAB17024.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae]
 gi|3821356|emb|CAA13244.1| D-alanine D-alanine ligase [Streptococcus pneumoniae]
 gi|3821366|emb|CAA13250.1| D-alanine D-alanine ligase [Streptococcus pneumoniae]
 gi|3821383|emb|CAA13258.1| D-alanine D-alanine ligase [Streptococcus pneumoniae]
 gi|3821411|emb|CAA13272.1| D-alanine D-alanine ligase [Streptococcus pneumoniae]
 gi|3821413|emb|CAA13273.1| D-alanine D-alanine ligase [Streptococcus pneumoniae]
 gi|148711409|gb|ABR02131.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711433|gb|ABR02143.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711453|gb|ABR02153.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711473|gb|ABR02163.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711499|gb|ABR02176.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711505|gb|ABR02179.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711509|gb|ABR02181.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711517|gb|ABR02185.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711519|gb|ABR02186.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711521|gb|ABR02187.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711525|gb|ABR02189.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711527|gb|ABR02190.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711549|gb|ABR02201.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711559|gb|ABR02206.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711561|gb|ABR02207.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711563|gb|ABR02208.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711565|gb|ABR02209.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711567|gb|ABR02210.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711569|gb|ABR02211.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711571|gb|ABR02212.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711573|gb|ABR02213.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711575|gb|ABR02214.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711577|gb|ABR02215.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711589|gb|ABR02221.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711593|gb|ABR02223.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711595|gb|ABR02224.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711597|gb|ABR02225.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711601|gb|ABR02227.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711607|gb|ABR02230.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711611|gb|ABR02232.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711619|gb|ABR02236.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711627|gb|ABR02240.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711629|gb|ABR02241.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711633|gb|ABR02243.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711635|gb|ABR02244.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711637|gb|ABR02245.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711639|gb|ABR02246.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711645|gb|ABR02249.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711653|gb|ABR02253.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711655|gb|ABR02254.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711657|gb|ABR02255.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711673|gb|ABR02263.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711675|gb|ABR02264.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711681|gb|ABR02267.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711683|gb|ABR02268.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711691|gb|ABR02272.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711695|gb|ABR02274.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711697|gb|ABR02275.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711699|gb|ABR02276.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711705|gb|ABR02279.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711709|gb|ABR02281.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711711|gb|ABR02282.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711713|gb|ABR02283.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711715|gb|ABR02284.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711725|gb|ABR02289.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711731|gb|ABR02292.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711733|gb|ABR02293.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711735|gb|ABR02294.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711737|gb|ABR02295.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711739|gb|ABR02296.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711755|gb|ABR02304.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711763|gb|ABR02308.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711769|gb|ABR02311.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711789|gb|ABR02321.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711793|gb|ABR02323.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711799|gb|ABR02326.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711803|gb|ABR02328.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711821|gb|ABR02337.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711825|gb|ABR02339.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711827|gb|ABR02340.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711829|gb|ABR02341.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711831|gb|ABR02342.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711833|gb|ABR02343.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|156146828|gb|ABU53426.1| D-alanylalanine synthetase [Streptococcus oralis]
          Length = 147

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 68/133 (51%), Gaps = 6/133 (4%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   K +    L      ++ +  ++L+EQ V+  E+  G
Sbjct: 7   EEKLAYPVFTKPSNMGSSVGIS--KSENQEELRQALKLAFRYDSRVLVEQGVNAREIEVG 64

Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           ++G+  +  T   E+ V    FY Y+ KY     T  +PAKI  D+   +++ A  A +A
Sbjct: 65  LLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKVTMDIPAKISDDVVAVMRQNAETAFRA 123

Query: 238 IGCRGISRSDFLF 250
           IG  G+SR DF +
Sbjct: 124 IGGLGLSRCDFFY 136


>gi|57790302|gb|AAW56078.1| vancomycin resistance protein C2 [Enterococcus casseliflavus]
          Length = 126

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/121 (28%), Positives = 68/121 (56%), Gaps = 4/121 (3%)

Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186
           P   KP + GSS GI  +   + I   L    ++ +   +L+++ + G+E+ CG++G+ S
Sbjct: 8   PVFFKPNEAGSSKGITKVTCVEEIAPAL--KEAFAYCSAVLLQKNIAGVEIGCGILGNDS 65

Query: 187 LDVTEI-AVPKSD-FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244
           L V    A+   D F+ +E KY  +++   +PA +P  I  +V+  A L ++++G +G++
Sbjct: 66  LTVGACDAISLVDGFFDFEEKYQLISAKITVPAPLPETIETKVKEQAQLLYRSLGLKGLA 125

Query: 245 R 245
           R
Sbjct: 126 R 126


>gi|256378297|ref|YP_003101957.1| D-alanine--D-alanine ligase [Actinosynnema mirum DSM 43827]
 gi|255922600|gb|ACU38111.1| D-alanine--D-alanine ligase [Actinosynnema mirum DSM 43827]
          Length = 339

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 71/247 (28%), Positives = 111/247 (44%), Gaps = 26/247 (10%)

Query: 69  QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPY 128
           +A+L+ L +PY  +     AL  DK  ++ VV++ GVPV    +V   T      + PP+
Sbjct: 98  RALLDALGVPYPGNPPDVMALGADKAMTRAVVAAAGVPVPEGRVV---TSADPCPLPPPF 154

Query: 129 VIKPLKGGSSLGIIVI--KKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDA 185
           V+KP+   +S G+ ++  + D    LD   + S     + L+E+YV  G E+ CGV+  +
Sbjct: 155 VVKPVDADNSDGLTLVHDRADYHAALDAAFACSPRR--RALVERYVPPGREVRCGVLVRS 212

Query: 186 S----LDVTEIAV-----PKSDFY------SYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
                L + E  +     P++D        S  L   +   + ++    P  +   VQ  
Sbjct: 213 GVPTPLPLEEYPLPSGVRPRADKLADDGGGSLSLVAKADGRSWIVDHDDP--VTAAVQEQ 270

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A   H+A+GCR  S  DF  DP  R  F LE  +     P S+   MA  AG    EL  
Sbjct: 271 ALRCHEALGCRDYSLFDFRIDPEGRPWF-LEAGLYCSFAPTSVITTMAGAAGIGLAELFA 329

Query: 291 WMVEDAS 297
             V  A+
Sbjct: 330 EAVTTAA 336


>gi|156146026|gb|ABU53074.1| D-alanylalanine synthetase [Streptococcus mitis]
          Length = 147

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 68/133 (51%), Gaps = 6/133 (4%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   K +    L      ++ +  ++L+EQ V+  E+  G
Sbjct: 7   EEKLTYPVFTKPSNMGSSVGIS--KSENQEELRQALELAFQYDSRVLVEQGVNAREIEVG 64

Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           ++G+  +  T   E+ V    FY Y+ KY     T  +PAKI  D+   +++ A  A +A
Sbjct: 65  LLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDIPAKISNDVIAVMRQNAETAFRA 123

Query: 238 IGCRGISRSDFLF 250
           IG  G+SR DF +
Sbjct: 124 IGGLGLSRCDFFY 136


>gi|156145996|gb|ABU53059.1| D-alanylalanine synthetase [Streptococcus mitis]
          Length = 147

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 68/133 (51%), Gaps = 6/133 (4%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   K +    L      ++ +  ++L+EQ V+  E+  G
Sbjct: 7   EEKLTYPVFTKPSNMGSSVGIS--KSENQEELRQALELAFRYDSRVLVEQGVNAREIEVG 64

Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           ++G+  +  T   E+ V    FY Y+ KY     T  +PAKI  D+   +++ A  A +A
Sbjct: 65  LLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRA 123

Query: 238 IGCRGISRSDFLF 250
           IG  G+SR DF +
Sbjct: 124 IGGLGLSRCDFFY 136


>gi|156146024|gb|ABU53073.1| D-alanylalanine synthetase [Streptococcus mitis]
          Length = 147

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 68/133 (51%), Gaps = 6/133 (4%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   K +    L      ++ +  ++L+EQ V+  E+  G
Sbjct: 7   EEKLTYPVFTKPSNMGSSVGIS--KSENQEELRQALELAFQYDSRVLVEQGVNAREIEVG 64

Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           ++G+  +  T   E+ V    FY Y+ KY     T  +PAKI  D+   +++ A  A +A
Sbjct: 65  LLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDIPAKISDDVVSVMRQNAETAFRA 123

Query: 238 IGCRGISRSDFLF 250
           IG  G+SR DF +
Sbjct: 124 IGGLGLSRCDFFY 136


>gi|6434097|emb|CAB60645.1| D-ala,D-ala ligase [Streptococcus pneumoniae]
 gi|6634619|emb|CAB64500.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae]
          Length = 147

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 68/133 (51%), Gaps = 6/133 (4%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   K +    L      ++ +  ++L+EQ V+  E+  G
Sbjct: 7   EEKLTYPVFTKPSNMGSSVGIS--KSENQEELRQALELAFQYDSRILVEQGVNAREIEVG 64

Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           ++G+  +  T   E+ V    FY Y+ KY     T  +PAKI  D+   +++ A  A +A
Sbjct: 65  LLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRA 123

Query: 238 IGCRGISRSDFLF 250
           IG  G+SR DF +
Sbjct: 124 IGGLGLSRCDFFY 136


>gi|3821419|emb|CAA13276.1| D-alanine D-alanine ligase [Streptococcus pneumoniae]
          Length = 147

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 68/133 (51%), Gaps = 6/133 (4%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   K +    L      ++ +  ++L+EQ V+  E+  G
Sbjct: 7   EEKLAYPVFTKPSNMGSSVGIS--KSENQEELRQALKLAFRYDSRVLVEQGVNAREIEVG 64

Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           ++G+  +  T   E+ V    FY Y+ KY     T  +PAKI  D+   +++ A  A +A
Sbjct: 65  LLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKVTMDIPAKISDDVVAVMRQNAEAAFRA 123

Query: 238 IGCRGISRSDFLF 250
           IG  G+SR DF +
Sbjct: 124 IGGLGLSRCDFFY 136


>gi|261349379|ref|ZP_05974796.1| ATP-grasp domain protein [Methanobrevibacter smithii DSM 2374]
 gi|288861743|gb|EFC94041.1| ATP-grasp domain protein [Methanobrevibacter smithii DSM 2374]
          Length = 367

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/197 (24%), Positives = 88/197 (44%), Gaps = 14/197 (7%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKG 135
           +IP   + + A  L+ DK+++K+  +  GVP     ++ +   +S+  I  P V+K  +G
Sbjct: 90  DIPVIAANVRAVRLTSDKIKTKEFYNEIGVPTPQYQILAKDDFESKLKIEFPVVLKQGQG 149

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195
                I V +      LD ++   +   D  L E++++G E++  V+G          VP
Sbjct: 150 QGGKDIKVAES-----LDDVKEY-FEEFDHALCEKFIEGSEISIEVLG-----YNGEYVP 198

Query: 196 KSDFYSYELKYSS---LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            S  Y  E        LN     P  +       VQR A+   + +G  GI   DF+F  
Sbjct: 199 LSPIYKGETTLEGIHPLNKIKTAPCLVEGLDNNLVQRTAYKVAKNLGSDGIFEMDFMFSK 258

Query: 253 LSRKVFWLEINVQPGMT 269
             ++++ +E+N +P  T
Sbjct: 259 DEQQLYAIEVNTRPNGT 275


>gi|148711703|gb|ABR02278.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|156146032|gb|ABU53077.1| D-alanylalanine synthetase [Streptococcus mitis]
          Length = 147

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 68/133 (51%), Gaps = 6/133 (4%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   K +    L      ++ +  ++L+EQ V+  E+  G
Sbjct: 7   EEKLTYPVFTKPSNMGSSVGIS--KSENQEELRQALELAFQYDSRVLVEQGVNAREIEVG 64

Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           ++G+  +  T   E+ V    FY Y+ KY     T  +PAKI  D+   +++ A  A +A
Sbjct: 65  LLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRA 123

Query: 238 IGCRGISRSDFLF 250
           IG  G+SR DF +
Sbjct: 124 IGGLGLSRCDFFY 136


>gi|156146848|gb|ABU53436.1| D-alanylalanine synthetase [Streptococcus viridans]
          Length = 147

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 68/133 (51%), Gaps = 6/133 (4%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   K +    L      ++ +  ++L+EQ V+  E+  G
Sbjct: 7   EEKLTYPVFTKPSNMGSSVGIS--KSENKEELHQALELAFKYDSRVLVEQGVNAREIEVG 64

Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           ++G+  +  T   E+ V    FY Y+ KY     T  +PAKI  D+   +++ A  A +A
Sbjct: 65  LLGNYGVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDIPAKISDDVIALMRKNAETAFRA 123

Query: 238 IGCRGISRSDFLF 250
           IG  G+SR DF +
Sbjct: 124 IGGLGLSRCDFFY 136


>gi|148711511|gb|ABR02182.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711513|gb|ABR02183.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711515|gb|ABR02184.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711529|gb|ABR02191.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711533|gb|ABR02193.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711535|gb|ABR02194.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711537|gb|ABR02195.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711539|gb|ABR02196.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711541|gb|ABR02197.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711543|gb|ABR02198.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711545|gb|ABR02199.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711547|gb|ABR02200.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711557|gb|ABR02205.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711579|gb|ABR02216.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711581|gb|ABR02217.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711583|gb|ABR02218.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711585|gb|ABR02219.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
          Length = 147

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 68/133 (51%), Gaps = 6/133 (4%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   K +    L      ++ +  ++L+EQ V+  E+  G
Sbjct: 7   EEKLTYPVFTKPSNMGSSVGIS--KSENQEELRQALKLAFQYDSRILVEQGVNAREIEVG 64

Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           ++G+  +  T   E+ V    FY Y+ KY     T  +PAKI  D+   +++ A  A +A
Sbjct: 65  LLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRA 123

Query: 238 IGCRGISRSDFLF 250
           IG  G+SR DF +
Sbjct: 124 IGGLGLSRCDFFY 136


>gi|3821379|emb|CAA13256.1| D-alanine D-alanine ligase [Streptococcus pneumoniae]
 gi|6634554|emb|CAB64456.1| D-alanine--D-alanine ligase [Streptococcus oralis]
 gi|6634615|emb|CAB64498.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae]
 gi|38520892|emb|CAE75669.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae]
 gi|40204832|emb|CAF02017.1| D-alanine:D-alanine ligase [Streptococcus mitis]
 gi|148711667|gb|ABR02260.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711743|gb|ABR02298.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711809|gb|ABR02331.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|156146012|gb|ABU53067.1| D-alanylalanine synthetase [Streptococcus mitis]
 gi|156146060|gb|ABU53091.1| D-alanylalanine synthetase [Streptococcus mitis]
          Length = 147

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 68/133 (51%), Gaps = 6/133 (4%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   K +    L      ++ +  ++L+EQ V+  E+  G
Sbjct: 7   EEKLTYPVFTKPSNMGSSVGIS--KSENQEELRQALELAFRYDSRVLVEQGVNAREIEVG 64

Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           ++G+  +  T   E+ V    FY Y+ KY     T  +PAKI  D+   +++ A  A +A
Sbjct: 65  LLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRA 123

Query: 238 IGCRGISRSDFLF 250
           IG  G+SR DF +
Sbjct: 124 IGGLGLSRCDFFY 136


>gi|6434091|emb|CAB60642.1| D-ala,D-ala ligase [Streptococcus pneumoniae]
 gi|6634601|emb|CAB64491.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae]
          Length = 147

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/133 (30%), Positives = 69/133 (51%), Gaps = 6/133 (4%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   +  + +   L    ++ +  ++L+EQ V+  E+  G
Sbjct: 7   EEKLAYPVFTKPSNMGSSVGISKAENQEELRQAL--KLAFRYDSRVLVEQGVNAREIEVG 64

Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           ++G+  +  T   E+ V    FY Y+ KY     T  +PAKI  D+   +++ A  A +A
Sbjct: 65  LLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRA 123

Query: 238 IGCRGISRSDFLF 250
           IG  G+SR DF +
Sbjct: 124 IGGLGLSRCDFFY 136


>gi|148711693|gb|ABR02273.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711727|gb|ABR02290.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711729|gb|ABR02291.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711749|gb|ABR02301.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711775|gb|ABR02314.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711779|gb|ABR02316.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711787|gb|ABR02320.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711791|gb|ABR02322.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
          Length = 147

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 68/133 (51%), Gaps = 6/133 (4%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   K +    L      ++ +  ++L+EQ V+  E+  G
Sbjct: 7   EEKLTYPVFTKPSNMGSSVGIS--KSENQEELRQALKLAFQYDSRVLVEQGVNAREIEVG 64

Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           ++G+  +  T   E+ V    FY Y+ KY     T  +PAKI  D+   +++ A  A +A
Sbjct: 65  LLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRA 123

Query: 238 IGCRGISRSDFLF 250
           IG  G+SR DF +
Sbjct: 124 IGGLGLSRCDFFY 136


>gi|6434087|emb|CAB60640.1| D-ala,D-ala ligase [Streptococcus pneumoniae]
 gi|6634597|emb|CAB64489.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae]
          Length = 147

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 68/133 (51%), Gaps = 6/133 (4%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   K +    L      ++ +  ++L+EQ V+  E+  G
Sbjct: 7   EEKLAYPVFTKPSNMGSSVGIS--KSENQEELRQALELAFRYDSRVLVEQGVNAREIEVG 64

Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           ++G+  +  T   E+ V    FY Y+ KY     T  +PAKI  D+   +++ A  A +A
Sbjct: 65  LLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRA 123

Query: 238 IGCRGISRSDFLF 250
           IG  G+SR DF +
Sbjct: 124 IGGLGLSRCDFFY 136


>gi|156146868|gb|ABU53446.1| D-alanylalanine synthetase [Streptococcus oralis]
          Length = 147

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 68/133 (51%), Gaps = 6/133 (4%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   K +    L      ++ +  ++L+EQ V+  E+  G
Sbjct: 7   EEKLTYPVFTKPSNMGSSVGIS--KSENQEELRQALELAFRYDSRVLVEQGVNAREIEVG 64

Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           ++G+  +  T   E+ V    FY Y+ KY     T  +PAKI  D+   +++ A  A +A
Sbjct: 65  LLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRA 123

Query: 238 IGCRGISRSDFLF 250
           IG  G+SR DF +
Sbjct: 124 IGGLGLSRCDFFY 136


>gi|167522361|ref|XP_001745518.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163775867|gb|EDQ89489.1| predicted protein [Monosiga brevicollis MX1]
          Length = 806

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 59/292 (20%), Positives = 117/292 (40%), Gaps = 45/292 (15%)

Query: 42  VGLVLAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSK 97
             L   H+ P + FN+    F     ++    A++++L + Y+ +     A+  DK    
Sbjct: 495 TALAREHIPP-VIFNLCDEGFNNHARLELHVPAMMDILGLHYSGAAPACLAICYDKGLVN 553

Query: 98  QVVSSCGVPVCPSILVNRFTMDSQHLISP------------PYVIKPLKGGSSLGIIVIK 145
            +    GVPV   + ++  T   Q LI              P  +KP++G  S+GI    
Sbjct: 554 ALARRLGVPVPAEVFISHETDLRQLLIDEAAATEFLQDLDFPVFVKPVRGDGSVGITADS 613

Query: 146 KDQSIP-----LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP----- 195
              ++      ++ ++++       +++++Y+ G E++ GV+G+  +D     +P     
Sbjct: 614 ICNNVEELISYVEAVRANPTVLSKDVVVQEYLQGEEVSVGVIGNPEMDAVGDVIPDSALF 673

Query: 196 ----KSDF----------YSYELKYSS----LNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
               K+DF           SYE K+             PA++  +  +++ +   L    
Sbjct: 674 LPILKADFSQLPADLPPILSYESKWDPESPYWTDVQYKPAEVSAEHRRQLHQQCALLFNR 733

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
              R   R DF F   ++    LE+N  PG         MA  AG ++ +++
Sbjct: 734 FELRDFGRFDFRFSKRTQTFKLLEVNPNPGWCHDGKAALMAQMAGLNYADMI 785


>gi|3821401|emb|CAA13267.1| D-alanine D-alanine ligase [Streptococcus pneumoniae]
          Length = 147

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 68/133 (51%), Gaps = 6/133 (4%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   K +    L      ++ +  ++L+EQ V+  E+  G
Sbjct: 7   EEKLAYPVFTKPSNMGSSVGIS--KSENQEELRQALELAFRYDSRVLVEQGVNAREIEVG 64

Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           ++G+  +  T   E+ V    FY Y+ KY     T  +PAKI  D+   +++ A  A +A
Sbjct: 65  LLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDIPAKISDDVVTVMRQNAETAFRA 123

Query: 238 IGCRGISRSDFLF 250
           IG  G+SR DF +
Sbjct: 124 IGGLGLSRCDFFY 136


>gi|3947752|emb|CAA13581.1| D-alanine D-alanine ligase [Streptococcus pneumoniae]
          Length = 146

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 68/133 (51%), Gaps = 6/133 (4%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   K +    L      ++ +  ++L+EQ V+  E+  G
Sbjct: 7   EEKLAYPVFTKPSNMGSSVGIS--KSENQEELRQALELAFRYDSRVLVEQGVNAREIEVG 64

Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           ++G+  +  T   E+ V    FY Y+ KY     T  +PAKI  D+   +++ A  A +A
Sbjct: 65  LLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRA 123

Query: 238 IGCRGISRSDFLF 250
           IG  G+SR DF +
Sbjct: 124 IGGLGLSRCDFFY 136


>gi|48525846|gb|AAT45133.1| D-alanine D-alanine ligase [Streptococcus mitis]
 gi|48525850|gb|AAT45135.1| D-alanine D-alanine ligase [Streptococcus mitis]
 gi|48525856|gb|AAT45138.1| D-alanine D-alanine ligase [Streptococcus mitis]
 gi|156146804|gb|ABU53414.1| D-alanylalanine synthetase [Streptococcus oralis]
 gi|156146818|gb|ABU53421.1| D-alanylalanine synthetase [Streptococcus oralis]
 gi|156146882|gb|ABU53453.1| D-alanylalanine synthetase [Streptococcus oralis]
 gi|156146886|gb|ABU53455.1| D-alanylalanine synthetase [Streptococcus oralis]
 gi|156146896|gb|ABU53460.1| D-alanylalanine synthetase [Streptococcus oralis]
 gi|156146900|gb|ABU53462.1| D-alanylalanine synthetase [Streptococcus oralis]
          Length = 147

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 68/133 (51%), Gaps = 6/133 (4%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   K +    L      ++ +  ++L+EQ V+  E+  G
Sbjct: 7   EEKLTYPVFTKPSNMGSSVGIS--KSENQEELRQALELAFQYDSRVLVEQGVNAREIEVG 64

Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           ++G+  +  T   E+ V    FY Y+ KY     T  +PAKI  D+   +++ A  A +A
Sbjct: 65  LLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRA 123

Query: 238 IGCRGISRSDFLF 250
           IG  G+SR DF +
Sbjct: 124 IGGLGLSRCDFFY 136


>gi|156146838|gb|ABU53431.1| D-alanylalanine synthetase [Streptococcus oralis]
 gi|156146840|gb|ABU53432.1| D-alanylalanine synthetase [Streptococcus oralis]
 gi|156146844|gb|ABU53434.1| D-alanylalanine synthetase [Streptococcus oralis]
 gi|156146846|gb|ABU53435.1| D-alanylalanine synthetase [Streptococcus oralis]
 gi|156146850|gb|ABU53437.1| D-alanylalanine synthetase [Streptococcus oralis]
 gi|156146852|gb|ABU53438.1| D-alanylalanine synthetase [Streptococcus oralis]
 gi|156146854|gb|ABU53439.1| D-alanylalanine synthetase [Streptococcus oralis]
 gi|156146856|gb|ABU53440.1| D-alanylalanine synthetase [Streptococcus oralis]
 gi|156146876|gb|ABU53450.1| D-alanylalanine synthetase [Streptococcus oralis]
          Length = 147

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 68/133 (51%), Gaps = 6/133 (4%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   K +    L      ++ +  ++L+EQ V+  E+  G
Sbjct: 7   EEKLTYPVFTKPSNMGSSVGIS--KSENQEELRQALELAFQYDSRVLVEQGVNAREIEVG 64

Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           ++G+  +  T   E+ V    FY Y+ KY     T  +PAKI  D+   +++ A  A +A
Sbjct: 65  LLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRA 123

Query: 238 IGCRGISRSDFLF 250
           IG  G+SR DF +
Sbjct: 124 IGGLGLSRCDFFY 136


>gi|2766009|emb|CAB16966.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae]
 gi|2766013|emb|CAB16968.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae]
 gi|2766119|emb|CAB17021.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae]
 gi|2766127|emb|CAB17025.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae]
 gi|3821368|emb|CAA13251.1| D-alanine D-alanine ligase [Streptococcus pneumoniae]
 gi|3821375|emb|CAA13254.1| D-alanine D-alanine ligase [Streptococcus pneumoniae]
 gi|3821387|emb|CAA13260.1| D-alanine D-alanine ligase [Streptococcus pneumoniae]
 gi|3821415|emb|CAA13274.1| D-alanine D-alanine ligase [Streptococcus pneumoniae]
 gi|148711425|gb|ABR02139.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711427|gb|ABR02140.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711467|gb|ABR02160.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711469|gb|ABR02161.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711495|gb|ABR02174.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711649|gb|ABR02251.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711659|gb|ABR02256.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711661|gb|ABR02257.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711663|gb|ABR02258.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711665|gb|ABR02259.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711671|gb|ABR02262.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711677|gb|ABR02265.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
          Length = 147

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 68/133 (51%), Gaps = 6/133 (4%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   K +    L      ++ +  ++L+EQ V+  E+  G
Sbjct: 7   EEKLAYPVFTKPSNMGSSVGIS--KSENQEELRQALELAFRYDSRVLVEQGVNAREIEVG 64

Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           ++G+  +  T   E+ V    FY Y+ KY     T  +PAKI  D+   +++ A  A +A
Sbjct: 65  LLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRA 123

Query: 238 IGCRGISRSDFLF 250
           IG  G+SR DF +
Sbjct: 124 IGGLGLSRCDFFY 136


>gi|3947750|emb|CAA13580.1| D-alanine D-alanine ligase [Streptococcus pneumoniae]
          Length = 146

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 68/133 (51%), Gaps = 6/133 (4%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   K +    L      ++ +  ++L+EQ V+  E+  G
Sbjct: 7   EEKLAYPVFTKPSNMGSSVGIS--KSENQEELRQALKLAFRYDSRVLVEQGVNAREIEVG 64

Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           ++G+  +  T   E+ V    FY Y+ KY     T  +PAKI  D+   +++ A  A +A
Sbjct: 65  LLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRA 123

Query: 238 IGCRGISRSDFLF 250
           IG  G+SR DF +
Sbjct: 124 IGGLGLSRCDFFY 136


>gi|156146002|gb|ABU53062.1| D-alanylalanine synthetase [Streptococcus mitis]
          Length = 147

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 68/133 (51%), Gaps = 6/133 (4%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   K +    L      ++ +  ++L+EQ V+  E+  G
Sbjct: 7   EEKLTYPVFTKPSNMGSSVGIS--KSENQEELRQALKLAFRYDSRVLVEQGVNAREIEVG 64

Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           ++G+  +  T   E+ V    FY Y+ KY     T  +PAKI  D+   +++ A  A +A
Sbjct: 65  LLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRA 123

Query: 238 IGCRGISRSDFLF 250
           IG  G+SR DF +
Sbjct: 124 IGGLGLSRCDFFY 136


>gi|2766041|emb|CAB16982.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae]
 gi|2766087|emb|CAB17005.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae]
 gi|2766131|emb|CAB17027.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae]
 gi|3821397|emb|CAA13265.1| D-alanine D-alanine ligase [Streptococcus pneumoniae]
 gi|148711407|gb|ABR02130.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711421|gb|ABR02137.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711423|gb|ABR02138.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711431|gb|ABR02142.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711465|gb|ABR02159.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711591|gb|ABR02222.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711741|gb|ABR02297.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
          Length = 147

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/133 (30%), Positives = 69/133 (51%), Gaps = 6/133 (4%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   +  + +   L    ++ +  ++L+EQ V+  E+  G
Sbjct: 7   EEKLAYPVFTKPSNMGSSVGISRSENQEELRQAL--KLAFRYDSRVLVEQGVNAREIEVG 64

Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           ++G+  +  T   E+ V    FY Y+ KY     T  +PAKI  D+   +++ A  A +A
Sbjct: 65  LLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKVTMDIPAKISDDVVAVMRQNAETAFRA 123

Query: 238 IGCRGISRSDFLF 250
           IG  G+SR DF +
Sbjct: 124 IGGLGLSRCDFFY 136


>gi|156146020|gb|ABU53071.1| D-alanylalanine synthetase [Streptococcus mitis]
          Length = 147

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 68/133 (51%), Gaps = 6/133 (4%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   K +    L      ++ +  ++L+EQ V+  E+  G
Sbjct: 7   EEKLTYPVFTKPSNMGSSVGIS--KSENQEELRQALKLAFQYDSRVLVEQGVNAREIEVG 64

Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           ++G+  +  T   E+ V    FY Y+ KY     T  +PAKI  D+   +++ A  A +A
Sbjct: 65  LLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRA 123

Query: 238 IGCRGISRSDFLF 250
           IG  G+SR DF +
Sbjct: 124 IGGLGLSRCDFFY 136


>gi|156146040|gb|ABU53081.1| D-alanylalanine synthetase [Streptococcus mitis]
          Length = 147

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 68/133 (51%), Gaps = 6/133 (4%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   K +    L      ++ +  ++L+EQ V+  E+  G
Sbjct: 7   EEKLTYPVFTKPSNMGSSVGIS--KSENQDELRQALKLAFQYDSRVLVEQGVNAREIEVG 64

Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           ++G+  +  T   E+ V    FY Y+ KY     T  +PAKI  D+   +++ A  A +A
Sbjct: 65  LLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDIPAKISDDVAAVMRQNAETAFRA 123

Query: 238 IGCRGISRSDFLF 250
           IG  G+SR DF +
Sbjct: 124 IGGLGLSRCDFFY 136


>gi|48525840|gb|AAT45130.1| D-alanine D-alanine ligase [Streptococcus mitis]
          Length = 147

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 68/133 (51%), Gaps = 6/133 (4%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   K +    L      ++ +  ++L+EQ V+  E+  G
Sbjct: 7   EEKLAYPVFTKPSNMGSSVGIS--KSENQEELRQALELAFRYDSRVLVEQGVNAREIEVG 64

Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           ++G+  +  T   E+ V    FY Y+ KY     T  +PAKI  D+   +++ A  A +A
Sbjct: 65  LLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRA 123

Query: 238 IGCRGISRSDFLF 250
           IG  G+SR DF +
Sbjct: 124 IGGLGLSRCDFFY 136


>gi|3821385|emb|CAA13259.1| D-alanine D-alanine ligase [Streptococcus pneumoniae]
 gi|48525838|gb|AAT45129.1| D-alanine D-alanine ligase [Streptococcus mitis]
 gi|48525844|gb|AAT45132.1| D-alanine D-alanine ligase [Streptococcus mitis]
 gi|48525848|gb|AAT45134.1| D-alanine D-alanine ligase [Streptococcus mitis]
          Length = 147

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 68/133 (51%), Gaps = 6/133 (4%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   K +    L      ++ +  ++L+EQ V+  E+  G
Sbjct: 7   EEKLAYPVFTKPSNMGSSVGIS--KSENQEELRQALELAFQYDSRVLVEQGVNAREIEVG 64

Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           ++G+  +  T   E+ V    FY Y+ KY     T  +PAKI  D+   +++ A  A +A
Sbjct: 65  LLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRA 123

Query: 238 IGCRGISRSDFLF 250
           IG  G+SR DF +
Sbjct: 124 IGGLGLSRCDFFY 136


>gi|156146004|gb|ABU53063.1| D-alanylalanine synthetase [Streptococcus mitis]
          Length = 147

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 68/133 (51%), Gaps = 6/133 (4%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   K +    L      ++ +  ++L+EQ V+  E+  G
Sbjct: 7   EEKLTYPVFTKPSNMGSSVGIS--KSENQEELRQALKLAFQYDSRVLVEQGVNAREIEVG 64

Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           ++G+  +  T   E+ V    FY Y+ KY     T  +PAKI  D+   +++ A  A +A
Sbjct: 65  LLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRA 123

Query: 238 IGCRGISRSDFLF 250
           IG  G+SR DF +
Sbjct: 124 IGGLGLSRCDFFY 136


>gi|6634605|emb|CAB64493.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae]
 gi|148711587|gb|ABR02220.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711647|gb|ABR02250.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711771|gb|ABR02312.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711773|gb|ABR02313.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711795|gb|ABR02324.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711819|gb|ABR02336.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
          Length = 147

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 68/133 (51%), Gaps = 6/133 (4%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   K +    L      ++ +  ++L+EQ V+  E+  G
Sbjct: 7   EEKLTYPVFTKPSNMGSSVGIS--KSENQEELRQALELAFQYDSRVLVEQGVNAREIEVG 64

Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           ++G+  +  T   E+ V    FY Y+ KY     T  +PAKI  D+   +++ A  A +A
Sbjct: 65  LLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRA 123

Query: 238 IGCRGISRSDFLF 250
           IG  G+SR DF +
Sbjct: 124 IGGLGLSRCDFFY 136


>gi|3821360|emb|CAA13247.1| D-alanine D-alanine ligase [Streptococcus pneumoniae]
 gi|3821399|emb|CAA13266.1| D-alanine D-alanine ligase [Streptococcus pneumoniae]
 gi|148711523|gb|ABR02188.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711553|gb|ABR02203.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711609|gb|ABR02231.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711617|gb|ABR02235.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711625|gb|ABR02239.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711631|gb|ABR02242.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711685|gb|ABR02269.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711687|gb|ABR02270.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711781|gb|ABR02317.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711783|gb|ABR02318.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711785|gb|ABR02319.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711797|gb|ABR02325.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711801|gb|ABR02327.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711805|gb|ABR02329.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711811|gb|ABR02332.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711815|gb|ABR02334.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|156145998|gb|ABU53060.1| D-alanylalanine synthetase [Streptococcus mitis]
 gi|156146008|gb|ABU53065.1| D-alanylalanine synthetase [Streptococcus mitis]
 gi|156146010|gb|ABU53066.1| D-alanylalanine synthetase [Streptococcus mitis]
 gi|156146016|gb|ABU53069.1| D-alanylalanine synthetase [Streptococcus mitis]
 gi|156146028|gb|ABU53075.1| D-alanylalanine synthetase [Streptococcus mitis]
 gi|156146048|gb|ABU53085.1| D-alanylalanine synthetase [Streptococcus mitis]
 gi|156146050|gb|ABU53086.1| D-alanylalanine synthetase [Streptococcus mitis]
          Length = 147

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 68/133 (51%), Gaps = 6/133 (4%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   K +    L      ++ +  ++L+EQ V+  E+  G
Sbjct: 7   EEKLTYPVFTKPSNMGSSVGIS--KSENQEELRQALKLAFQYDSRVLVEQGVNAREIEVG 64

Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           ++G+  +  T   E+ V    FY Y+ KY     T  +PAKI  D+   +++ A  A +A
Sbjct: 65  LLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRA 123

Query: 238 IGCRGISRSDFLF 250
           IG  G+SR DF +
Sbjct: 124 IGGLGLSRCDFFY 136


>gi|156146874|gb|ABU53449.1| D-alanylalanine synthetase [Streptococcus oralis]
 gi|156146878|gb|ABU53451.1| D-alanylalanine synthetase [Streptococcus oralis]
 gi|156146880|gb|ABU53452.1| D-alanylalanine synthetase [Streptococcus oralis]
 gi|156146888|gb|ABU53456.1| D-alanylalanine synthetase [Streptococcus oralis]
 gi|156146890|gb|ABU53457.1| D-alanylalanine synthetase [Streptococcus oralis]
 gi|156146902|gb|ABU53463.1| D-alanylalanine synthetase [Streptococcus oralis]
          Length = 147

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 68/133 (51%), Gaps = 6/133 (4%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   K +    L      ++ +  ++L+EQ V+  E+  G
Sbjct: 7   EEKLTYPVFTKPSNMGSSVGIS--KSENQEELRQALKLAFQYDSRVLVEQGVNAREIEVG 64

Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           ++G+  +  T   E+ V    FY Y+ KY     T  +PAKI  D+   +++ A  A +A
Sbjct: 65  LLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRA 123

Query: 238 IGCRGISRSDFLF 250
           IG  G+SR DF +
Sbjct: 124 IGGLGLSRCDFFY 136


>gi|156146014|gb|ABU53068.1| D-alanylalanine synthetase [Streptococcus mitis]
          Length = 147

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 68/133 (51%), Gaps = 6/133 (4%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   K +    L      ++ +  ++L+EQ V+  E+  G
Sbjct: 7   EEKLTYPVFTKPSNMGSSVGIS--KSENQEELRQALKLAFQYDSRVLVEQGVNAREIEVG 64

Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           ++G+  +  T   E+ V    FY Y+ KY     T  +PAKI  D+   +++ A  A +A
Sbjct: 65  LLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRA 123

Query: 238 IGCRGISRSDFLF 250
           IG  G+SR DF +
Sbjct: 124 IGGLGLSRCDFFY 136


>gi|148711555|gb|ABR02204.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
          Length = 147

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 68/133 (51%), Gaps = 6/133 (4%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   K +    L      ++ +  ++L+EQ V+  E+  G
Sbjct: 7   EEKLTYPVFTKPSNMGSSVGIS--KSENQEELRQALELAFRYDSRVLVEQGVNAREIEVG 64

Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           ++G+  +  T   E+ V    FY Y+ KY     T  +PAKI  D+   +++ A  A +A
Sbjct: 65  LLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDVPAKISDDVIAVMRQNAETAFRA 123

Query: 238 IGCRGISRSDFLF 250
           IG  G+SR DF +
Sbjct: 124 IGGLGLSRCDFFY 136


>gi|6434095|emb|CAB60644.1| D-ala,D-ala ligase [Streptococcus pneumoniae]
 gi|6634617|emb|CAB64499.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae]
 gi|148711507|gb|ABR02180.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
          Length = 147

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 68/133 (51%), Gaps = 6/133 (4%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   K +    L      ++ +  ++L+EQ V+  E+  G
Sbjct: 7   EEKLAYPVFTKPSNMGSSVGIS--KSENQEELRQALKLAFQYDSRVLVEQGVNAREIEVG 64

Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           ++G+  +  T   E+ V    FY Y+ KY     T  +PAKI  D+   +++ A  A +A
Sbjct: 65  LLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRA 123

Query: 238 IGCRGISRSDFLF 250
           IG  G+SR DF +
Sbjct: 124 IGGLGLSRCDFFY 136


>gi|3947731|emb|CAA13579.1| D-alanine D-alanine ligase [Streptococcus pneumoniae]
          Length = 146

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 68/133 (51%), Gaps = 6/133 (4%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   K +    L      ++ +  ++L+EQ V+  E+  G
Sbjct: 7   EEKLAYPVFTKPSNMGSSVGIS--KSENQEELRQALKLAFQYDSRVLVEQGVNAREIEVG 64

Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           ++G+  +  T   E+ V    FY Y+ KY     T  +PAKI  D+   +++ A  A +A
Sbjct: 65  LLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRA 123

Query: 238 IGCRGISRSDFLF 250
           IG  G+SR DF +
Sbjct: 124 IGGLGLSRCDFFY 136


>gi|2766001|emb|CAB16962.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae]
 gi|2766015|emb|CAB16969.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae]
 gi|2766017|emb|CAB16970.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae]
 gi|2766083|emb|CAB17003.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae]
 gi|2766113|emb|CAB17018.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae]
 gi|2766115|emb|CAB17019.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae]
 gi|3821362|emb|CAA13248.1| D-alanine D-alanine ligase [Streptococcus pneumoniae]
 gi|3821381|emb|CAA13257.1| D-alanine D-alanine ligase [Streptococcus pneumoniae]
 gi|3821393|emb|CAA13263.1| D-alanine D-alanine ligase [Streptococcus pneumoniae]
 gi|3821407|emb|CAA13270.1| D-alanine D-alanine ligase [Streptococcus pneumoniae]
 gi|3821409|emb|CAA13271.1| D-alanine D-alanine ligase [Streptococcus pneumoniae]
 gi|3821417|emb|CAA13275.1| D-alanine D-alanine ligase [Streptococcus pneumoniae]
 gi|148711411|gb|ABR02132.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711413|gb|ABR02133.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711415|gb|ABR02134.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711417|gb|ABR02135.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711435|gb|ABR02144.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711437|gb|ABR02145.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711439|gb|ABR02146.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711451|gb|ABR02152.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711455|gb|ABR02154.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711457|gb|ABR02155.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711459|gb|ABR02156.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711461|gb|ABR02157.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711471|gb|ABR02162.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711481|gb|ABR02167.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711483|gb|ABR02168.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711485|gb|ABR02169.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711487|gb|ABR02170.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711489|gb|ABR02171.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711491|gb|ABR02172.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711493|gb|ABR02173.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711501|gb|ABR02177.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711531|gb|ABR02192.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711551|gb|ABR02202.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711615|gb|ABR02234.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711689|gb|ABR02271.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711717|gb|ABR02285.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711835|gb|ABR02344.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711837|gb|ABR02345.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|331687687|gb|AED88246.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
          Length = 147

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 68/133 (51%), Gaps = 6/133 (4%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   K +    L      ++ +  ++L+EQ V+  E+  G
Sbjct: 7   EEKLAYPVFTKPSNMGSSVGIS--KSENQEELRQALKLAFRYDSRVLVEQGVNAREIEVG 64

Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           ++G+  +  T   E+ V    FY Y+ KY     T  +PAKI  D+   +++ A  A +A
Sbjct: 65  LLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRA 123

Query: 238 IGCRGISRSDFLF 250
           IG  G+SR DF +
Sbjct: 124 IGGLGLSRCDFFY 136


>gi|325972390|ref|YP_004248581.1| D-alanine--D-alanine ligase domain protein [Spirochaeta sp. Buddy]
 gi|324027628|gb|ADY14387.1| D-alanine--D-alanine ligase domain protein [Spirochaeta sp. Buddy]
          Length = 314

 Score = 57.0 bits (136), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 67/257 (26%), Positives = 113/257 (43%), Gaps = 29/257 (11%)

Query: 52  DLAFNVLHGNFGEDGL---VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
           DL FN++  N     L   V  + + L +PY+       +++ DK+ +K+ +   G+P  
Sbjct: 61  DLVFNLVE-NLSSSRLLHLVPLVCQTLSVPYSGGSAYTLSVTGDKLVAKRQLGLAGLPTP 119

Query: 109 PSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL--DLLQ-SSSWNHGDQ 165
           P         +    +  P ++KP+   +S+GI     D S+    D  Q S + +    
Sbjct: 120 PWF---EDVAECSDFLQVPLMLKPVAQEASVGIT----DASVRTFSDKAQLSLALSEHPD 172

Query: 166 LLIEQYVDGIELTCGVMGDAS-LDVTE---IAVPKS--DFYSYELK-------YSSLNST 212
           L  E+Y+DG E    ++     L V E   +  PK       YE K       Y     +
Sbjct: 173 LFAERYIDGREFNLSILPSGRVLPVCEMRFVDYPKDKVKIVGYEAKWQQESFAYQHTQRS 232

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
           +V   +  + + +E++RLA   +   G  G +R DF  D  +R  F LE+N  P +T  S
Sbjct: 233 YVFAPEQRV-LVEELKRLAKEVYTLFGSSGYARVDFRVDEQNRP-FILEMNSNPCITADS 290

Query: 273 IFPEMAAYAGYSFRELL 289
            F   A+ AG S+ E++
Sbjct: 291 GFIAAASEAGMSYTEVI 307


>gi|156146842|gb|ABU53433.1| D-alanylalanine synthetase [Streptococcus oralis]
          Length = 147

 Score = 57.0 bits (136), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 68/133 (51%), Gaps = 6/133 (4%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   K +    L      ++ +  ++L+EQ V+  E+  G
Sbjct: 7   EEKLTFPVFTKPSNMGSSVGIS--KSENQEELRQALELAFQYDSRVLVEQGVNAREIEVG 64

Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           ++G+  +  T   E+ V    FY Y+ KY     T  +PAKI  D+   +++ A  A +A
Sbjct: 65  LLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRA 123

Query: 238 IGCRGISRSDFLF 250
           IG  G+SR DF +
Sbjct: 124 IGGLGLSRCDFFY 136


>gi|3821358|emb|CAA13246.1| D-alanine D-alanine ligase [Streptococcus pneumoniae]
          Length = 147

 Score = 57.0 bits (136), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 68/133 (51%), Gaps = 6/133 (4%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   K +    L      ++ +  ++L+EQ V+  E+  G
Sbjct: 7   EEKLAYPVFTKPSNMGSSVGIS--KSENQEELRQALKLAFQYDSRVLVEQGVNAREIEVG 64

Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           ++G+  +  T   E+ V    FY Y+ KY     T  +PAKI  D+   +++ A  A +A
Sbjct: 65  LLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRA 123

Query: 238 IGCRGISRSDFLF 250
           IG  G+SR DF +
Sbjct: 124 IGGLGLSRCDFFY 136


>gi|156146822|gb|ABU53423.1| D-alanylalanine synthetase [Streptococcus oralis]
          Length = 147

 Score = 57.0 bits (136), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 68/133 (51%), Gaps = 6/133 (4%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   K +    L      ++ +  ++L+EQ V+  E+  G
Sbjct: 7   EEKLTYPVFTKPSNMGSSVGIS--KSENHEELRQALELAFQYDSRVLVEQGVNAREIEVG 64

Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           ++G+  +  T   E+ V    FY Y+ KY     T  +PAKI  D+   +++ A  A +A
Sbjct: 65  LLGNYEVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDIPAKISEDVVAIMRQNAETAFRA 123

Query: 238 IGCRGISRSDFLF 250
           IG  G+SR DF +
Sbjct: 124 IGGLGLSRCDFFY 136


>gi|313192159|emb|CBX19939.1| D alanine-D alanine ligase [Clostridium perfringens]
 gi|313192163|emb|CBX19941.1| D alanine-D alanine ligase [Clostridium perfringens]
          Length = 128

 Score = 57.0 bits (136), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/133 (26%), Positives = 70/133 (52%), Gaps = 6/133 (4%)

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194
           GGSS+   +++  +++   +L++  ++   +++IE+Y+ G E+TC ++    L V  I  
Sbjct: 2   GGSSVATTLVESKEAVKDAVLEALKYDT--EVMIEEYIKGDEITCPIIDGKMLPVLAIK- 58

Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
           PK  F+    KY    +   +  K+  D++KEV+++A   ++ + C   +R D L     
Sbjct: 59  PKGKFFDIASKYEDGGADEFI-VKLNEDLHKEVEKMALETYKLLKCDVYARVDMLVK--D 115

Query: 255 RKVFWLEINVQPG 267
              + LE+N  PG
Sbjct: 116 NIPYVLEVNTLPG 128


>gi|6634609|emb|CAB64495.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae]
 gi|148711623|gb|ABR02238.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
          Length = 147

 Score = 57.0 bits (136), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/130 (31%), Positives = 67/130 (51%), Gaps = 6/130 (4%)

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           ++ P   KP   GSS+GI   K +    L      ++ +  ++L+EQ V+  E+  G++G
Sbjct: 10  LTYPVFTKPSNMGSSVGIS--KSENQEELRQALELAFQYDSRILVEQGVNAREIEVGLLG 67

Query: 184 DASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           +  +  T   E+ V    FY Y+ KY     T  +PAKI  D+   +++ A  A +AIG 
Sbjct: 68  NYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAIGG 126

Query: 241 RGISRSDFLF 250
            G+SR DF +
Sbjct: 127 LGLSRCDFFY 136


>gi|156146034|gb|ABU53078.1| D-alanylalanine synthetase [Streptococcus mitis]
          Length = 147

 Score = 57.0 bits (136), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 68/133 (51%), Gaps = 6/133 (4%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   K +    L      ++ +  ++L+EQ V+  E+  G
Sbjct: 7   EEKLTYPVFTKPSNMGSSVGIS--KSENQEELRQALKLAFQYDSRVLVEQGVNAREIEVG 64

Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           ++G+  +  T   E+ V    FY Y+ KY     T  +PAKI  D+   +++ A  A +A
Sbjct: 65  LLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRA 123

Query: 238 IGCRGISRSDFLF 250
           IG  G+SR DF +
Sbjct: 124 IGGLGLSRCDFFY 136


>gi|302389045|ref|YP_003824866.1| D-alanine--D-alanine ligase [Thermosediminibacter oceani DSM 16646]
 gi|302199673|gb|ADL07243.1| D-alanine--D-alanine ligase [Thermosediminibacter oceani DSM 16646]
          Length = 324

 Score = 57.0 bits (136), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 65/260 (25%), Positives = 120/260 (46%), Gaps = 29/260 (11%)

Query: 24  SALEDAGFKVSQIDVDR-----SVGLVLAHLKPDLAFNVLHGNFGEDGLVQ-AILELLEI 77
           SA+++AGF    I+  +     ++  VL   K DL FN          L + A LE   I
Sbjct: 37  SAIKEAGFDAVMIEWKKDNPQETLRKVLEE-KVDLVFNA-------SSLEEVAFLEAFGI 88

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGS 137
           P+  SG+    ++ DK   K++V+   +P    I+V        H +  P  +KP++G  
Sbjct: 89  PFAGSGL--DLVATDKATRKKIVAYHKLPTPRFIVVEDPNEIPDHDLKYPLFVKPVRGRG 146

Query: 138 SLGII---VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV---TE 191
           S GI    +I++ + +   ++   +   G   L+E+++ G E+T G++G  +  V    E
Sbjct: 147 SAGISEENIIERHEDLAR-VVSKITDKIGQPALVEEFIRGREITVGIIGYKNPRVLPPVE 205

Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF- 250
           I    +   ++E K       H  PA++  +  ++V+  A   ++ +  +  SR D +  
Sbjct: 206 IEYNSTRTNTFEHKMFDNEIIHC-PARLSPEEEEKVKSTALSIYKVLNAKDFSRIDMILG 264

Query: 251 -DPLSRKVFWLEINVQPGMT 269
            D +    ++LEIN   G+T
Sbjct: 265 DDGIP---YFLEINTFAGLT 281


>gi|114320877|ref|YP_742560.1| hypothetical protein Mlg_1724 [Alkalilimnicola ehrlichii MLHE-1]
 gi|114227271|gb|ABI57070.1| conserved hypothetical protein [Alkalilimnicola ehrlichii MLHE-1]
          Length = 343

 Score = 57.0 bits (136), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 77/301 (25%), Positives = 124/301 (41%), Gaps = 35/301 (11%)

Query: 13  EVSLSSGKACASALED-AGFKVSQIDVDRSVGLVLAHLKPDLAFNV----LHGNFGEDGL 67
           E  + + +    ALE   G++V  +D    +   L    PDLA N            +  
Sbjct: 33  ESEVEAVRQARVALETLGGYRVEVLDDHDRLFDRLREAPPDLALNFCDTGYRNQLRHEQN 92

Query: 68  VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP- 126
           V A+LELLEIPYT +     ++  DK   + + +S G+PV     V+   + +  ++ P 
Sbjct: 93  VPALLELLEIPYTGATPACMSICGDKALVRLLAASHGIPVPNETFVD---LTADPMVLPE 149

Query: 127 --PYVIKPLKGGSSLGII---VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
             P +IKP  G  S G+    V+   Q     L Q +      Q LI+ ++ G E T G+
Sbjct: 150 LYPALIKPNAGCGSQGVTPDSVVHDAQQARACLEQLALEPERPQALIQDFLTGAEYTLGL 209

Query: 182 MGDASLDVTEIAVPKSDFYSYE------LKYSS--------LNSTHVLPAKI-PLDIYKE 226
           +G+     T + + + D+          L Y S          S    PA++ P      
Sbjct: 210 VGNPETGFTVLPLLEIDYSRLPADLPPILSYGSKVDPNSAYWQSLRFKPAELAPEHQAAM 269

Query: 227 VQRLAFLAHQAIGCRGISRSDFL--FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
           V+   FL  + +G R  +R D+    D + R    L+ N  P  +       MA +AGY 
Sbjct: 270 VEHSVFL-FERLGFRDYARFDYRCGVDGVPR---LLDANFNPTWSYDGKMAIMAGWAGYE 325

Query: 285 F 285
           +
Sbjct: 326 Y 326


>gi|156146030|gb|ABU53076.1| D-alanylalanine synthetase [Streptococcus mitis]
          Length = 147

 Score = 57.0 bits (136), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 68/133 (51%), Gaps = 6/133 (4%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   K +    L      ++ +  ++L+EQ V+  E+  G
Sbjct: 7   EEKLAYPVFTKPSNMGSSVGIS--KSENQEELRQALKLAFQYDSRVLVEQGVNAREIEVG 64

Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           ++G+  +  T   E+ V    FY Y+ KY     T  +PAKI  D+   +++ A  A +A
Sbjct: 65  LLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDIPAKISDDVIAVMRQNAETAFRA 123

Query: 238 IGCRGISRSDFLF 250
           IG  G+SR DF +
Sbjct: 124 IGGLGLSRCDFFY 136


>gi|148711621|gb|ABR02237.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
          Length = 147

 Score = 57.0 bits (136), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 68/133 (51%), Gaps = 6/133 (4%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   K +    L      ++ +  ++L+EQ V+  E+  G
Sbjct: 7   EEKLTYPVFTKPSNMGSSVGIS--KSENQEELRQALELAFQYDSRVLVEQGVNAREIEVG 64

Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           ++G+  +  T   E+ V    FY Y+ KY     T  +PAKI  D+   +++ A  A +A
Sbjct: 65  LLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDIPAKIGDDVVAVMRQNAETAFRA 123

Query: 238 IGCRGISRSDFLF 250
           IG  G+SR DF +
Sbjct: 124 IGGLGLSRCDFFY 136


>gi|3821371|emb|CAA13252.1| D-alanine D-alanine ligase [Streptococcus pneumoniae]
          Length = 147

 Score = 57.0 bits (136), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 68/133 (51%), Gaps = 6/133 (4%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   K +    L      ++ +  ++L+EQ V+  E+  G
Sbjct: 7   EEKLAYPVFAKPSNMGSSVGIS--KSENQEELRQALKLAFRYDSRVLVEQGVNAREIEVG 64

Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           ++G+  +  T   E+ V    FY Y+ KY     T  +PAKI  D+   +++ A  A +A
Sbjct: 65  LLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRA 123

Query: 238 IGCRGISRSDFLF 250
           IG  G+SR DF +
Sbjct: 124 IGGLGLSRCDFFY 136


>gi|148711599|gb|ABR02226.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
          Length = 147

 Score = 57.0 bits (136), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 44/134 (32%), Positives = 68/134 (50%), Gaps = 7/134 (5%)

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
            + LI P +  KP   GSS+GI   K D    L      ++ +  ++L+EQ V+  E+  
Sbjct: 7   EEKLIYPVFT-KPSNMGSSVGIS--KSDNQEELRQALRLAFQYDSRVLVEQGVNAREIEV 63

Query: 180 GVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           G++G+  +  T   E+ V    FY Y+ KY     T  +PAKI  D+   +++ A  A  
Sbjct: 64  GLLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAFC 122

Query: 237 AIGCRGISRSDFLF 250
           AIG  G+SR DF +
Sbjct: 123 AIGGLGLSRCDFFY 136


>gi|40204849|emb|CAF02025.1| D-alanine:D-alanine ligase [Streptococcus mitis B6]
 gi|156146018|gb|ABU53070.1| D-alanylalanine synthetase [Streptococcus mitis B6]
          Length = 147

 Score = 57.0 bits (136), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 68/133 (51%), Gaps = 6/133 (4%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   K +    L      ++ +  ++L+EQ V+  E+  G
Sbjct: 7   EEKLNYPVFTKPSNMGSSVGIS--KSENQEELRQALKLAFQYDSRVLVEQGVNAREIEVG 64

Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           ++G+  +  T   E+ V    FY Y+ KY     T  +PAKI  D+   +++ A  A +A
Sbjct: 65  LLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRA 123

Query: 238 IGCRGISRSDFLF 250
           IG  G+SR DF +
Sbjct: 124 IGGLGLSRCDFFY 136


>gi|6634611|emb|CAB64496.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae]
 gi|148711679|gb|ABR02266.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711719|gb|ABR02286.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711721|gb|ABR02287.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711723|gb|ABR02288.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711757|gb|ABR02305.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711759|gb|ABR02306.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|156145994|gb|ABU53058.1| D-alanylalanine synthetase [Streptococcus mitis]
          Length = 147

 Score = 57.0 bits (136), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 68/133 (51%), Gaps = 6/133 (4%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   K +    L      ++ +  ++L+EQ V+  E+  G
Sbjct: 7   EEKLTYPVFTKPSNMGSSVGIS--KSENQEELRQALELAFQYDSRVLVEQGVNAREIEVG 64

Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           ++G+  +  T   E+ V    FY Y+ KY     T  +PAKI  D+   +++ A  A +A
Sbjct: 65  LLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDIPAKIGDDVVAVMRQNAETAFRA 123

Query: 238 IGCRGISRSDFLF 250
           IG  G+SR DF +
Sbjct: 124 IGGLGLSRCDFFY 136


>gi|6634613|emb|CAB64497.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae]
          Length = 147

 Score = 57.0 bits (136), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 68/133 (51%), Gaps = 6/133 (4%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   K +    L      ++ +  ++L+EQ V+  E+  G
Sbjct: 7   EEKLTYPVFTKPSNMGSSVGIS--KSENQEELRQALKLAFQYDSRVLVEQGVNAREIEVG 64

Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           ++G+  +  T   E+ V    FY Y+ KY     T  +PAKI  D+   +++ A  A +A
Sbjct: 65  LLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDIPAKIGDDVVAVMRQNAETAFRA 123

Query: 238 IGCRGISRSDFLF 250
           IG  G+SR DF +
Sbjct: 124 IGGLGLSRCDFFY 136


>gi|6434089|emb|CAB60641.1| D-ala,D-ala ligase [Streptococcus pneumoniae]
 gi|6634599|emb|CAB64490.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae]
          Length = 147

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 41/127 (32%), Positives = 65/127 (51%), Gaps = 6/127 (4%)

Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186
           P   KP   GSS+GI   K +    L      ++ +  ++L+EQ V+  E+  G++G+  
Sbjct: 13  PVFTKPSNMGSSVGIS--KSENQEELRQALELAFRYDSRVLVEQGVNAREIEVGLLGNYD 70

Query: 187 LDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           +  T   E+ V    FY Y+ KY     T  +PAKI  D+   +++ A  A +AIG  G+
Sbjct: 71  VKSTLPGEV-VKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAIGGLGL 129

Query: 244 SRSDFLF 250
           SR DF +
Sbjct: 130 SRCDFFY 136


>gi|3821377|emb|CAA13255.1| D-alanine D-alanine ligase [Streptococcus pneumoniae]
          Length = 147

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 68/133 (51%), Gaps = 6/133 (4%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   K +    L      ++ +  ++L+EQ V+  E+  G
Sbjct: 7   EEKLTYPVFTKPSNMGSSVGIS--KSENQEELRQALKLAFQYDSRVLVEQGVNAREIEVG 64

Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           ++G+  +  T   E+ V    FY Y+ KY     T  +PAKI  D+   +++ A  A +A
Sbjct: 65  LLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDIPAKISDDVVAIMRQNAETAFRA 123

Query: 238 IGCRGISRSDFLF 250
           IG  G+SR DF +
Sbjct: 124 IGGLGLSRCDFFY 136


>gi|156146860|gb|ABU53442.1| D-alanylalanine synthetase [Streptococcus oralis]
          Length = 147

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 67/133 (50%), Gaps = 6/133 (4%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   K +    L      ++ +  ++L+EQ V+  E+  G
Sbjct: 7   EEKLTYPVFTKPSNMGSSVGIS--KSENQEELRQALELAFQYDSRVLVEQGVNAREIEVG 64

Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           ++G+  +  T   E+ V    FY Y+ KY     T  +PAKI  D+   ++  A  A +A
Sbjct: 65  LLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRHNAETAFRA 123

Query: 238 IGCRGISRSDFLF 250
           IG  G+SR DF +
Sbjct: 124 IGGLGLSRCDFFY 136


>gi|2766003|emb|CAB16963.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae]
 gi|3821364|emb|CAA13249.1| D-alanine D-alanine ligase [Streptococcus pneumoniae]
 gi|148711449|gb|ABR02151.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711497|gb|ABR02175.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711503|gb|ABR02178.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711641|gb|ABR02247.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
          Length = 147

 Score = 56.6 bits (135), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 41/127 (32%), Positives = 65/127 (51%), Gaps = 6/127 (4%)

Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186
           P   KP   GSS+GI   K +    L      ++ +  ++L+EQ V+  E+  G++G+  
Sbjct: 13  PVFTKPSNMGSSVGIS--KSENQEELRQALKLAFRYDSRVLVEQGVNAREIEVGLLGNYD 70

Query: 187 LDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           +  T   E+ V    FY Y+ KY     T  +PAKI  D+   +++ A  A +AIG  G+
Sbjct: 71  VKSTLPGEV-VKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAIGGLGL 129

Query: 244 SRSDFLF 250
           SR DF +
Sbjct: 130 SRCDFFY 136


>gi|156146832|gb|ABU53428.1| D-alanylalanine synthetase [Streptococcus oralis]
 gi|156146834|gb|ABU53429.1| D-alanylalanine synthetase [Streptococcus oralis]
 gi|156146836|gb|ABU53430.1| D-alanylalanine synthetase [Streptococcus oralis]
          Length = 147

 Score = 56.6 bits (135), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 67/133 (50%), Gaps = 6/133 (4%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   K +    L      ++ +  ++L+EQ V+  E+  G
Sbjct: 7   EEKLTYPVFTKPSNMGSSVGIS--KSENQEELRQALELAFQYDSRVLVEQGVNAREIEVG 64

Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           ++G+  +  T   E+ V    FY Y+ KY     T  +PAKI  D+   ++  A  A +A
Sbjct: 65  LLGNYEVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRHNAETAFRA 123

Query: 238 IGCRGISRSDFLF 250
           IG  G+SR DF +
Sbjct: 124 IGGLGLSRCDFFY 136


>gi|156146806|gb|ABU53415.1| D-alanylalanine synthetase [Streptococcus oralis]
          Length = 147

 Score = 56.6 bits (135), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 68/133 (51%), Gaps = 6/133 (4%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   K +    L      ++ +  ++L+EQ V+  E+  G
Sbjct: 7   EKKLTYPVFTKPSNMGSSVGIS--KSENHEELRQALELAFQYDSRVLVEQGVNAREIEVG 64

Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           ++G+  +  T   E+ V    FY Y+ KY     T  +PAKI  D+   +++ A  A +A
Sbjct: 65  LLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRA 123

Query: 238 IGCRGISRSDFLF 250
           IG  G+SR DF +
Sbjct: 124 IGGLGLSRCDFFY 136


>gi|156146058|gb|ABU53090.1| D-alanylalanine synthetase [Streptococcus mitis]
          Length = 147

 Score = 56.6 bits (135), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 68/133 (51%), Gaps = 6/133 (4%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   K +    L      ++ +  ++L+EQ V+  E+  G
Sbjct: 7   EEKLTYPVFTKPSNMGSSVGIS--KSENQEELRQALKLAFQYDSRVLVEQGVNAREIEIG 64

Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           ++G+  +  T   E+ V    FY Y+ KY     T  +PAKI  D+   +++ A  A +A
Sbjct: 65  LLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDIPAKISDDVIAVMRQNAEAAFRA 123

Query: 238 IGCRGISRSDFLF 250
           IG  G+SR DF +
Sbjct: 124 IGGLGLSRCDFFY 136


>gi|156146820|gb|ABU53422.1| D-alanylalanine synthetase [Streptococcus oralis]
          Length = 147

 Score = 56.6 bits (135), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 67/133 (50%), Gaps = 6/133 (4%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   K +    L      ++ +  ++L+EQ V+  E+  G
Sbjct: 7   EEKLTYPVFTKPSNMGSSVGIS--KSENQEELRQALELAFQYDSRVLVEQGVNAREIEVG 64

Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           ++G+  +  T   E+ V    FY Y+ KY     T  +PAKI  D+   ++  A  A +A
Sbjct: 65  LLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRHNAETAFRA 123

Query: 238 IGCRGISRSDFLF 250
           IG  G+SR DF +
Sbjct: 124 IGGLGLSRCDFFY 136


>gi|3821405|emb|CAA13269.1| D-alanine D-alanine ligase [Streptococcus pneumoniae]
          Length = 147

 Score = 56.6 bits (135), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 68/133 (51%), Gaps = 6/133 (4%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   K +    L      ++ +  ++L+EQ V+  E+  G
Sbjct: 7   EEKLAYPVFTKPSNMGSSVGIS--KSENQEELRPALELAFRYDSRVLVEQGVNAREIEVG 64

Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           ++G+  +  T   E+ V    FY Y+ KY     T  +PAKI  D+   +++ A  A +A
Sbjct: 65  LLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRA 123

Query: 238 IGCRGISRSDFLF 250
           IG  G+SR DF +
Sbjct: 124 IGGLGLSRCDFFY 136


>gi|156146830|gb|ABU53427.1| D-alanylalanine synthetase [Streptococcus oralis]
          Length = 147

 Score = 56.6 bits (135), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 67/133 (50%), Gaps = 6/133 (4%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   K +    L      ++ +  ++L+EQ V+  E+  G
Sbjct: 7   EEKLTYPVFTKPSNMGSSVGIS--KSENQEELRQALELAFQYDSRVLVEQGVNAREIEVG 64

Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           ++G+  +  T   E+ V    FY Y+ KY     T  +PAKI  D+   ++  A  A +A
Sbjct: 65  LLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDIPAKISDDVAAVMRHNAETAFRA 123

Query: 238 IGCRGISRSDFLF 250
           IG  G+SR DF +
Sbjct: 124 IGGLGLSRCDFFY 136


>gi|3821342|emb|CAA13245.1| D-alanine D-alanine ligase [Streptococcus mitis]
 gi|19351919|emb|CAD19596.1| D-alanine D-alanine ligase [Streptococcus pneumoniae]
 gi|19351921|emb|CAD19597.1| D-alanine D-alanine ligase [Streptococcus pneumoniae]
 gi|123204379|gb|ABM73540.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711603|gb|ABR02228.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
          Length = 147

 Score = 56.6 bits (135), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 68/133 (51%), Gaps = 6/133 (4%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   K +    L      ++ +  ++L+EQ V+  E+  G
Sbjct: 7   EEKLTYPVFTKPSNMGSSVGIS--KSENQEELRQALKLAFQYDSRVLVEQGVNAREIEVG 64

Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           ++G+  +  T   E+ V    FY Y+ KY     T  +PAKI  D+   +++ A  A +A
Sbjct: 65  LLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDIPAKISDDVVVVMRQNAETAFRA 123

Query: 238 IGCRGISRSDFLF 250
           IG  G+SR DF +
Sbjct: 124 IGGLGLSRCDFFY 136


>gi|156146862|gb|ABU53443.1| D-alanylalanine synthetase [Streptococcus oralis]
          Length = 147

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 67/133 (50%), Gaps = 6/133 (4%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   K +    L      ++ +  ++L+EQ V+  E+  G
Sbjct: 7   EEKLTYPVFTKPSNMGSSVGIS--KSENHEELRQALELAFQYDSRVLVEQGVNAREIEVG 64

Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           ++G+  +  T   E+ V    FY Y+ KY     T  +PAKI  D+   ++  A  A +A
Sbjct: 65  LLGNYEVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRHNAETAFRA 123

Query: 238 IGCRGISRSDFLF 250
           IG  G+SR DF +
Sbjct: 124 IGGLGLSRCDFFY 136


>gi|242309199|ref|ZP_04808354.1| ligase [Helicobacter pullorum MIT 98-5489]
 gi|239524240|gb|EEQ64106.1| ligase [Helicobacter pullorum MIT 98-5489]
          Length = 345

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 57/234 (24%), Positives = 104/234 (44%), Gaps = 15/234 (6%)

Query: 53  LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
           +  N++HG  GE+G++ ++L+   I Y      A  LS DK  +K +  + G+    S+ 
Sbjct: 89  MVLNLIHGGDGENGVIASLLDFYGIAYIGPRNPACVLSFDKELTKLLAKNRGI---LSLD 145

Query: 113 VNRFTMDSQHLISPPY--VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +Q  I  P+  +IKP + GSS+GI +    +   LD     ++ + ++ ++E 
Sbjct: 146 YQVLYKGAQKEIKFPFPVIIKPARLGSSIGIFIANNQKE--LDYGLEEAFEYDNKAIVEP 203

Query: 171 YVDGIELT--CGVMGDASLDVTEIAVP-KSDFYSYELKYSSLNST-HVLPAKIPLDIYKE 226
           ++ GI+     G      +  + +  P K +F  +E KY   + T +   A IP  + K 
Sbjct: 204 FISGIKEYNLAGYKSAQGIKFSFVEEPQKKEFLDFEKKYLDFSRTQNAKEADIPEALQKT 263

Query: 227 VQRLAFLAHQAIGCRGISRSDFLF-DPLSRKVFWLEINVQPGMTPVSIFPEMAA 279
           +Q      ++ +    + R DF   D L    +  EIN  PG     +F +   
Sbjct: 264 LQDNFIKIYENLFEGALIRCDFFVKDDL---CYLNEINPIPGSMANYLFDDFKG 314


>gi|115379297|ref|ZP_01466409.1| D-ala D-ala ligase C-terminus family [Stigmatella aurantiaca
           DW4/3-1]
 gi|310821036|ref|YP_003953394.1| d-ala d-ala ligase family [Stigmatella aurantiaca DW4/3-1]
 gi|115363707|gb|EAU62830.1| D-ala D-ala ligase C-terminus family [Stigmatella aurantiaca
           DW4/3-1]
 gi|309394108|gb|ADO71567.1| D-ala D-ala ligase family [Stigmatella aurantiaca DW4/3-1]
          Length = 344

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 60/270 (22%), Positives = 121/270 (44%), Gaps = 34/270 (12%)

Query: 52  DLAFNVLHGNFGEDGL----VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV 107
           DL FN+    F ED      V A++E+  + +T SG     L+ DK+ +KQ++    +P 
Sbjct: 60  DLVFNLCE-TFAEDYRLEVNVAALMEMARVKFTGSGTAGLLLAQDKILTKQLLEYHEIPT 118

Query: 108 CPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGI----IVIKKDQSIPLDLLQSSSWNHG 163
                 +  T+++   ++ P ++KP +  +S+GI    +V   +Q    D ++       
Sbjct: 119 PDFATFDGSTVETNGDLAFPLIVKPARSDASIGIGGKSLVNSWEQLT--DRVREIRKELR 176

Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTH---------- 213
           D+ L E+++ G E+  G++G   L    + + + DF +++    +++             
Sbjct: 177 DEALAEEFIQGREVYVGIIGTKELPEI-LPIVELDFGNWDKDKPTISDREVKFGPETEGS 235

Query: 214 ---VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF----DPLSRKVFWLEINVQP 266
              V+   I   + + V+R A LA++A+  +  +R D       DP     + LE+N  P
Sbjct: 236 PKLVIARDISPVLRQRVERAALLAYRALKLQDYARIDLRISEQDDP-----YILEVNPNP 290

Query: 267 GMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            +         A   G S+ +L+  +++ A
Sbjct: 291 YLEDKGELALAAREKGLSYTQLIGRILDSA 320


>gi|222446081|ref|ZP_03608596.1| hypothetical protein METSMIALI_01730 [Methanobrevibacter smithii
           DSM 2375]
 gi|222435646|gb|EEE42811.1| hypothetical protein METSMIALI_01730 [Methanobrevibacter smithii
           DSM 2375]
          Length = 367

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 48/197 (24%), Positives = 88/197 (44%), Gaps = 14/197 (7%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKG 135
           +IP   + + A  L+ DK+++K+  +  GVP     ++ +   +S+  +  P V+K  +G
Sbjct: 90  DIPVIAANVRAVRLTSDKIKTKEFYNEIGVPTPQYQILAKDDFESKLKMEFPVVLKQGQG 149

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195
                I V +      LD ++   +   D  L E++++G E++  V+G          VP
Sbjct: 150 QGGKDIKVAES-----LDDVKEY-FEEFDHALCEKFIEGSEISIEVLG-----YNGEYVP 198

Query: 196 KSDFYSYELKYSS---LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            S  Y  E        LN     P  +       VQR A+   + +G  GI   DF+F  
Sbjct: 199 LSPIYKGETTLEGIHPLNKIKTAPCLVEGLDNNLVQRTAYKVAKNLGSDGIFEMDFMFSK 258

Query: 253 LSRKVFWLEINVQPGMT 269
             ++++ +E+N +P  T
Sbjct: 259 DEQQLYAIEVNTRPNGT 275


>gi|148642421|ref|YP_001272934.1| carbamoyl-phosphate synthase, large subunit, CarB
           [Methanobrevibacter smithii ATCC 35061]
 gi|148551438|gb|ABQ86566.1| carbamoyl-phosphate synthase, large subunit, CarB
           [Methanobrevibacter smithii ATCC 35061]
          Length = 367

 Score = 56.2 bits (134), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 48/197 (24%), Positives = 88/197 (44%), Gaps = 14/197 (7%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKG 135
           +IP   + + A  L+ DK+++K+  +  GVP     ++ +   +S+  +  P V+K  +G
Sbjct: 90  DIPVIAANVRAVRLTSDKIKTKEFYNEIGVPTPQYQILAKDDFESKLKMEFPVVLKQGQG 149

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195
                I V +      LD ++   +   D  L E++++G E++  V+G          VP
Sbjct: 150 QGGKDIKVAES-----LDDVKEY-FEEFDHALCEKFIEGSEISIEVLG-----YNGEYVP 198

Query: 196 KSDFYSYELKYSS---LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            S  Y  E        LN     P  +       VQR A+   + +G  GI   DF+F  
Sbjct: 199 LSPIYKGETTLEGIHPLNKIKTAPCLVEGLDNNLVQRTAYKVAKNLGSDGIFEMDFMFSK 258

Query: 253 LSRKVFWLEINVQPGMT 269
             ++++ +E+N +P  T
Sbjct: 259 DEQQLYAIEVNTRPNGT 275


>gi|156146816|gb|ABU53420.1| D-alanylalanine synthetase [Streptococcus oralis]
          Length = 147

 Score = 56.2 bits (134), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 67/133 (50%), Gaps = 6/133 (4%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   K +    L      ++ +  ++L+EQ V+  E+  G
Sbjct: 7   EEKLTYPVFTKPSNMGSSVGIS--KSENQDELRQALELAFQYDSRVLVEQGVNAREIEVG 64

Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           ++G+  +  T   E+ V    FY Y+ KY     T  +PAKI  D+   ++  A  A +A
Sbjct: 65  LLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDIPAKISDDVVAIMRHNAETAFRA 123

Query: 238 IGCRGISRSDFLF 250
           IG  G+SR DF +
Sbjct: 124 IGGLGLSRCDFFY 136


>gi|156146808|gb|ABU53416.1| D-alanylalanine synthetase [Streptococcus oralis Uo5]
 gi|156146898|gb|ABU53461.1| D-alanylalanine synthetase [Streptococcus oralis]
          Length = 147

 Score = 56.2 bits (134), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 67/133 (50%), Gaps = 6/133 (4%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   K +    L      ++ +  ++L+EQ V+  E+  G
Sbjct: 7   EEKLTYPVFTKPSNMGSSVGIS--KSENHEELRQALELAFQYDSRVLVEQGVNAREIEVG 64

Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           ++G+  +  T   E+ V    FY Y+ KY     T  +PAKI  D+   ++  A  A +A
Sbjct: 65  LLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRHNAETAFRA 123

Query: 238 IGCRGISRSDFLF 250
           IG  G+SR DF +
Sbjct: 124 IGGLGLSRCDFFY 136


>gi|148711669|gb|ABR02261.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
          Length = 147

 Score = 56.2 bits (134), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 68/133 (51%), Gaps = 6/133 (4%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   K +    L      ++ +  ++L+EQ V+  E+  G
Sbjct: 7   EEKLTYPVFTKPSNMGSSVGIS--KSENQEELRQALKLAFQYDSRVLVEQGVNAREIEIG 64

Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           ++G+  +  T   E+ V    FY Y+ KY     T  +PAKI  D+   +++ A  A +A
Sbjct: 65  LLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDIPAKISDDVVVVMRQNAETAFRA 123

Query: 238 IGCRGISRSDFLF 250
           IG  G+SR DF +
Sbjct: 124 IGGLGLSRCDFFY 136


>gi|220961818|gb|ACL93346.1| D-alanine D-alanine ligase [Streptococcus thermophilus]
 gi|220961820|gb|ACL93347.1| D-alanine D-alanine ligase [Streptococcus thermophilus]
          Length = 152

 Score = 56.2 bits (134), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 35/123 (28%), Positives = 66/123 (53%), Gaps = 8/123 (6%)

Query: 127 PYVIKPLKGGSSLGIIVIKKDQSI--PLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
           P  +KP   GSS+GI   + +  +   +DL    +  +  ++LIEQ V   E+  G++G+
Sbjct: 34  PVFVKPANMGSSVGISKAENESELRSAIDL----ALKYDSRILIEQGVVAREIEVGILGN 89

Query: 185 ASLDVTEIAVPKSD--FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            ++  T+      D  FY Y+ KY     T  +PA++P+++  +++  A  A +A+G  G
Sbjct: 90  TTVKTTDPGEVVKDVAFYDYQAKYIDNKITMDIPARVPVEVMTQMRAYAAKAFRALGGCG 149

Query: 243 ISR 245
           ++R
Sbjct: 150 LAR 152


>gi|56368336|emb|CAF02125.1| D-alanine-D-alanine ligase [Oenococcus oeni]
          Length = 147

 Score = 56.2 bits (134), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 43/68 (63%)

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV 105
           + +LK D+ F  +HGN GEDG +  +  L+ IPY  SG+ A A+S DK+ +K++++  G+
Sbjct: 47  IRNLKLDVLFPSVHGNLGEDGTLAGLFRLMNIPYVGSGLRAHAISFDKVITKELMTVNGI 106

Query: 106 PVCPSILV 113
                I++
Sbjct: 107 RNTKYIVI 114


>gi|148711643|gb|ABR02248.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
          Length = 147

 Score = 56.2 bits (134), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 41/127 (32%), Positives = 65/127 (51%), Gaps = 6/127 (4%)

Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186
           P   KP   GSS+GI   K +    L      ++ +  ++L+EQ V+  E+  G++G+  
Sbjct: 13  PVFTKPSNMGSSVGIS--KSENQEELRQALKLAFRYDSRVLVEQGVNAREIEVGLLGNYD 70

Query: 187 LDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           +  T   E+ V    FY Y+ KY     T  +PAKI  D+   +++ A  A +AIG  G+
Sbjct: 71  VKSTLPGEV-VKDVAFYDYDAKYIDNKITMDIPAKISDDVVVVMRQNAETAFRAIGGLGL 129

Query: 244 SRSDFLF 250
           SR DF +
Sbjct: 130 SRCDFFY 136


>gi|220961816|gb|ACL93345.1| D-alanine D-alanine ligase [Streptococcus thermophilus]
          Length = 152

 Score = 56.2 bits (134), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 35/123 (28%), Positives = 66/123 (53%), Gaps = 8/123 (6%)

Query: 127 PYVIKPLKGGSSLGIIVIKKDQSI--PLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
           P  +KP   GSS+GI   + +  +   +DL    +  +  ++LIEQ V   E+  G++G+
Sbjct: 34  PVFVKPANMGSSVGISKAENESELRSAIDL----ALKYDSRILIEQGVVAREIEVGILGN 89

Query: 185 ASLDVTEIA--VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            ++  T+    V    FY Y+ KY     T  +PA++P+++  +++  A  A +A+G  G
Sbjct: 90  TTVKTTDPGEVVKDVAFYDYQAKYIDNKITMDIPARVPVEVMTQMRAYAAKAFRALGGCG 149

Query: 243 ISR 245
           ++R
Sbjct: 150 LAR 152


>gi|307323017|ref|ZP_07602266.1| D-alanine--D-alanine ligase domain protein [Sinorhizobium meliloti
           AK83]
 gi|306891336|gb|EFN22273.1| D-alanine--D-alanine ligase domain protein [Sinorhizobium meliloti
           AK83]
          Length = 280

 Score = 56.2 bits (134), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 62/267 (23%), Positives = 116/267 (43%), Gaps = 21/267 (7%)

Query: 50  KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC----GV 105
           + +   N+LHG FGEDG +Q +  L  +  +      ++L+M+K      VSS      +
Sbjct: 8   RNEYVVNLLHGQFGEDGGIQTLAALSGVTGSFGDPHVASLTMNKYAMSAFVSSLLPAERI 67

Query: 106 PVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSLGIIV----IKKDQSIPLDLLQS 157
            V  + L+    +D        +  P+V+KP   GSSL   +    I  D+ I    L  
Sbjct: 68  RVPKTTLITPRNVDQLINIARSLDRPFVVKPNSLGSSLFAQLFDDPISSDEEI--HTLLR 125

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK----SDFYSYELKYSSLNSTH 213
             + +    +I++++ G E TCG +  +S +V  + + K    ++F   + KYS  N   
Sbjct: 126 KIFTYDTAAVIQEFISGDEYTCGCLISSS-EVIPLPIVKLEADNEFCGRDQKYSK-NVAK 183

Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273
                   +I + +Q +A     +I    ++R DF       ++++LE N  PG      
Sbjct: 184 KSVVNRNDEISERIQNIATSIASSIDLYNMARFDFRVSD-EDEIWFLECNYIPGTAKNGS 242

Query: 274 FPEMAAYAGYSFRELLLWMVEDASCLR 300
           F +M    G +  +L+  +  ++   +
Sbjct: 243 FEKMLNSYGMTVVDLISRITSNSKTFK 269


>gi|156146858|gb|ABU53441.1| D-alanylalanine synthetase [Streptococcus oralis]
 gi|156146870|gb|ABU53447.1| D-alanylalanine synthetase [Streptococcus oralis]
          Length = 147

 Score = 55.8 bits (133), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 67/133 (50%), Gaps = 6/133 (4%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   K +    L      ++ +  ++L+EQ V+  E+  G
Sbjct: 7   EEKLTYPVFTKPSNMGSSVGIS--KSENHEELRQALELAFQYDSRVLVEQGVNAREIEVG 64

Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           ++G+  +  T   E+ V    FY Y+ KY     T  +PAKI  D+   ++  A  A +A
Sbjct: 65  LLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDIPAKISDDVVAIMRHNAETAFRA 123

Query: 238 IGCRGISRSDFLF 250
           IG  G+SR DF +
Sbjct: 124 IGGLGLSRCDFFY 136


>gi|56368332|emb|CAF02123.1| D-alanine-D-alanine ligase [Oenococcus oeni]
          Length = 147

 Score = 55.8 bits (133), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 43/68 (63%)

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV 105
           + +LK D+ F  +HGN GEDG +  +  L+ IPY  SG+ A A+S DK+ +K++++  G+
Sbjct: 47  IRNLKLDVLFPSVHGNLGEDGTLAGLFRLMNIPYVGSGLRAHAISFDKVITKELMTVNGI 106

Query: 106 PVCPSILV 113
                I++
Sbjct: 107 RNTKYIVI 114


>gi|56368324|emb|CAF02119.1| D-alanine-D-alanine ligase [Oenococcus oeni]
 gi|56368326|emb|CAF02120.1| D-alanine-D-alanine ligase [Oenococcus oeni]
 gi|56368330|emb|CAF02122.1| D-alanine-D-alanine ligase [Oenococcus oeni]
          Length = 147

 Score = 55.8 bits (133), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 43/68 (63%)

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV 105
           + +LK D+ F  +HGN GEDG +  +  L+ IPY  SG+ A A+S DK+ +K++++  G+
Sbjct: 47  IRNLKLDVLFPSVHGNLGEDGTLAGLFRLMNIPYVGSGLRAHAISFDKVITKELMTVNGI 106

Query: 106 PVCPSILV 113
                I++
Sbjct: 107 RNTKYIVI 114


>gi|56368328|emb|CAF02121.1| D-alanine-D-alanine ligase [Oenococcus oeni]
 gi|56368338|emb|CAF02126.1| D-alanine-D-alanine ligase [Oenococcus oeni]
 gi|56368342|emb|CAF02128.1| D-alanine-D-alanine ligase [Oenococcus oeni]
          Length = 147

 Score = 55.8 bits (133), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 43/68 (63%)

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV 105
           + +LK D+ F  +HGN GEDG +  +  L+ IPY  SG+ A A+S DK+ +K++++  G+
Sbjct: 47  IRNLKLDVLFPSVHGNLGEDGTLAGLFRLMNIPYVGSGLRAHAISFDKVITKELMTVNGI 106

Query: 106 PVCPSILV 113
                I++
Sbjct: 107 RNTKYIVI 114


>gi|148711651|gb|ABR02252.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
          Length = 147

 Score = 55.8 bits (133), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 67/133 (50%), Gaps = 6/133 (4%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   K +    L      ++ +  ++L+EQ V+  E+  G
Sbjct: 7   EEKLAYPVFTKPSNMGSSVGIS--KSENQEELRQALKLAFRYDSRVLVEQGVNAREIEVG 64

Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           ++G+  +  T   E+ V    FY Y+ KY     T  +PAKI  D+   +++ A  A  A
Sbjct: 65  LLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKVTMDIPAKISDDVVAVMRQNAETAFCA 123

Query: 238 IGCRGISRSDFLF 250
           IG  G+SR DF +
Sbjct: 124 IGGLGLSRCDFFY 136


>gi|149194598|ref|ZP_01871694.1| D-alanylalanine synthetase [Caminibacter mediatlanticus TB-2]
 gi|149135342|gb|EDM23822.1| D-alanylalanine synthetase [Caminibacter mediatlanticus TB-2]
          Length = 341

 Score = 55.8 bits (133), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 54/230 (23%), Positives = 101/230 (43%), Gaps = 14/230 (6%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+  N++HG  GEDG + A+LE  +I      + A ++S +K+ +K       V V    
Sbjct: 89  DVVINLIHGRDGEDGKIPAMLEFYKIKAITPNVEACSVSYNKVLTKAYAKEMRVNVIEYE 148

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
           +++      +     P +IKP + GSS+G+ + K    +      +  ++  D +++E +
Sbjct: 149 IIDS----PKTKFDFPVIIKPARLGSSIGVSIAKNQDELNYAFDVAREFD--DLIIVEPF 202

Query: 172 VDGIE---LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           ++GIE   L     GD  +      V K +F  ++ KY   +   V   +  L+I ++ +
Sbjct: 203 IEGIEEYNLAGCKAGDEWIFSKLEKVEKKEFLDFDKKYMDFSRKEVKINE-NLEIKEKFK 261

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL-EINVQPGMTPVSIFPEM 277
                 +  I    + R DF        + +L EIN  PG     +F + 
Sbjct: 262 TEFKKIYNNIFKNALIRCDFF---CKDDIIYLNEINPIPGSMANYLFDDF 308


>gi|148711605|gb|ABR02229.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
          Length = 147

 Score = 55.8 bits (133), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 40/133 (30%), Positives = 67/133 (50%), Gaps = 6/133 (4%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   K +    L      ++ +  ++L+EQ V+  E+  G
Sbjct: 7   EEKLTYPVFTKPSNMGSSVGIS--KSENQEELRQALKLAFQYDSRVLVEQGVNAREIEVG 64

Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           ++G+  +  T   E+ V    FY Y+ KY     T  +PAKI  D+   +++ A    +A
Sbjct: 65  LLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETTFRA 123

Query: 238 IGCRGISRSDFLF 250
           IG  G+SR DF +
Sbjct: 124 IGGLGLSRCDFFY 136


>gi|312132199|ref|YP_003999539.1| d-alanine--d-alanine ligase [Leadbetterella byssophila DSM 17132]
 gi|311908745|gb|ADQ19186.1| D-alanine--D-alanine ligase [Leadbetterella byssophila DSM 17132]
          Length = 585

 Score = 55.8 bits (133), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 37/105 (35%), Positives = 55/105 (52%), Gaps = 10/105 (9%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDK-MRSKQVVSSCGVPVCPS 110
           D AF V+HG   EDG +Q +LE L IPY   GIL SA+ ++K  ++K +  + G      
Sbjct: 112 DFAFVVMHGPSAEDGSIQGLLEWLNIPYLGPGILGSAVGINKPFQNKLMAYATGQEKKYL 171

Query: 111 ILVNR--FTMDSQHLISP-------PYVIKPLKGGSSLGIIVIKK 146
            +  R   T D   L S        P+V+K    GSS+G+ +++K
Sbjct: 172 TISKREWNTSDRSKLFSSVIAKLGFPFVVKAPHQGSSIGVAIVRK 216



 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 68/154 (44%), Gaps = 9/154 (5%)

Query: 153 DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFY------SYELKY 206
           ++ Q +S N  D +LIE+++ G E +CGV+ D    V  + +P ++ Y       ++ KY
Sbjct: 291 EVAQLNSVNGEDYVLIEEFISGQEFSCGVIQDDEGRV--LPLPPAEVYGETATFDFKAKY 348

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
            S  S   +P K      +++      A +A G   I R D  F      V   + N  P
Sbjct: 349 KSTVSKKRIPVKTSDANLEKIHEDVLKAFEATGMSVICRID-GFITEDDVVVLHDPNTLP 407

Query: 267 GMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           GM+P S   +  A  G++    L + +  +   R
Sbjct: 408 GMSPSSFIFKQMAEVGFNITNSLTYFIRQSLIER 441


>gi|56368340|emb|CAF02127.1| D-alanine-D-alanine ligase [Oenococcus oeni]
          Length = 147

 Score = 55.5 bits (132), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 43/68 (63%)

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV 105
           + +LK D+ F  +HGN GEDG +  +  L+ IPY  SG+ A A+S DK+ +K++++  G+
Sbjct: 47  IRNLKLDVLFPSVHGNLGEDGTLAGLFRLMNIPYVGSGLRAHAISFDKVITKELMTVNGI 106

Query: 106 PVCPSILV 113
                I++
Sbjct: 107 RNTKYIVI 114


>gi|254459120|ref|ZP_05072542.1| D-alanine-D-alanine ligase [Campylobacterales bacterium GD 1]
 gi|207084013|gb|EDZ61303.1| D-alanine-D-alanine ligase [Campylobacterales bacterium GD 1]
          Length = 345

 Score = 55.5 bits (132), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 76/320 (23%), Positives = 136/320 (42%), Gaps = 49/320 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI--DVDRSVGLVLA----------- 47
           + +L GG S E E+S+ S       L  +GF +S +  D D    L+ A           
Sbjct: 3   LTILFGGASFEHEISIVSAITLKGKL--SGFDLSFVFCDQDHKFYLIEASKMKATTFSRG 60

Query: 48  -HLK-PDLA---------------------FNVLHGNFGEDGLVQAILELLEIPYTHSGI 84
            H K P L+                      N++HG  GEDG + ++L+   I Y     
Sbjct: 61  EHKKMPQLSITNGSFSQKTMFSSVEHTGTVLNLIHGADGEDGTIASLLDFFSIKYIGPRT 120

Query: 85  LASALSMDKMRSKQVVSSCGVP-VCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIV 143
            AS  S DK  +K +  +  +  V   +L ++    +   I  P +IKP + GSS+G+ +
Sbjct: 121 DASVFSYDKRYTKWLCVAKNIKSVEYEVLSSK--EHTNINIPYPIIIKPARLGSSIGVSI 178

Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDVTEIAVP-KSDFY 200
           ++ +    LD     ++     +++E +++G++     G M    +  + +  P K +F 
Sbjct: 179 VRNESE--LDYALDVAFEFDKTVIVEPFIEGVKEYNLAGFMAKGEVYFSIVEEPQKEEFL 236

Query: 201 SYELKYSSLN-STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
            +E KY   + S  VL A I  ++  +++R     ++ +    + R DF    +  KV  
Sbjct: 237 DFEKKYMDFSRSEKVLKAGISPELEVKLKRAFEKVYKNLFEGALIRCDFFV--VDGKVLL 294

Query: 260 LEINVQPGMTPVSIFPEMAA 279
            EIN  PG     +F +  +
Sbjct: 295 NEINPIPGSMANYLFDDFKS 314


>gi|283781145|ref|YP_003371900.1| GCN5-like N-acetyltransferase [Pirellula staleyi DSM 6068]
 gi|283439598|gb|ADB18040.1| GCN5-related N-acetyltransferase [Pirellula staleyi DSM 6068]
          Length = 508

 Score = 55.5 bits (132), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 78/311 (25%), Positives = 139/311 (44%), Gaps = 33/311 (10%)

Query: 10  SEREVSLSSGKACASALEDAGFKV----SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGED 65
           S+R+V L        A   AG+ V    + +D  R V  +L   + D+ FN++    G D
Sbjct: 19  SDRDV-LEQVAVVEQACRAAGWPVEVCETSLDFTR-VDQLLTSGRFDVVFNLVESLAGSD 76

Query: 66  GLVQAILELLE---IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
            L +  + L+E   +P T S   A  LS DK+ +KQ++    +P      ++     S  
Sbjct: 77  QLAELFVRLVEARGVPITGSSARALQLSNDKIATKQLLREKQLPTAAWCTLDDAGNASAE 136

Query: 123 LISPPYVIKPLKGGSSLGI---IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
           L  PP+++K +   +SLG+    V+    +     +++ +   G     EQ++DG E   
Sbjct: 137 L-RPPWIVKAIGQHASLGLDDSCVVLGPAADVAAAIRAQAARLGTPCFAEQFIDGREFNV 195

Query: 180 GVM----GDASLDVTEI-----AVPKSDFYSYELKYSSLNS-------THVLPAKI-PLD 222
            ++    G   L + EI        K     Y+ K+S+ ++       T   PA   PL 
Sbjct: 196 SLLATEQGVEVLPIAEILFVDFPAGKPRIVGYDAKWSADSAEFTGTPRTFDFPASDGPL- 254

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAG 282
               +++L+  A +++   G +R DF  D  ++ +  LE+N  P ++P + F   AA +G
Sbjct: 255 -LALLEKLSREAWKSLQLSGYARIDFRVDQQAQPLL-LEVNTNPCLSPDAGFAAAAAQSG 312

Query: 283 YSFRELLLWMV 293
            S  E +  +V
Sbjct: 313 RSLEEAIQQIV 323


>gi|1857222|gb|AAB49637.1| vancomycin resistance protein [Enterococcus casseliflavus]
          Length = 123

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 61/122 (50%), Gaps = 10/122 (8%)

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP-------P 127
           +++PY   G+  SAL M+K    Q  ++ GV   P+IL+     + Q  I         P
Sbjct: 1   MKLPYVGCGVAGSALCMNKWLLHQAAAAIGVQSAPTILLTN-QANQQEQIEAFIQTHGFP 59

Query: 128 YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL 187
              KP + GSS GI  +   + I   L    ++ +   +L+++ + G+E+ CG++G+ SL
Sbjct: 60  VFFKPNEAGSSKGITKVTCVEEIASAL--KEAFTYCSAVLLQKNIAGVEIGCGILGNDSL 117

Query: 188 DV 189
            V
Sbjct: 118 TV 119


>gi|92111856|gb|ABE73672.1| D-alanine:D-alanine ligase [Streptococcus salivarius]
          Length = 152

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/121 (28%), Positives = 62/121 (51%), Gaps = 4/121 (3%)

Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186
           P  +KP   GSS+GI   K +    L      +  +  ++LIEQ V   E+  G++G+ +
Sbjct: 34  PVFVKPANMGSSVGIS--KAENEAELRAAIDLALKYDSRILIEQGVVAREIEVGILGNTT 91

Query: 187 LDVTEIA--VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244
           +  T+    V    FY Y+ KY     T  +PA +P+++  +++  A  A +A+G  G++
Sbjct: 92  VKTTDPGEVVKDVAFYDYQAKYIDNKITMDIPAHVPVEVMTQMRAYAAKAFRALGGCGLA 151

Query: 245 R 245
           R
Sbjct: 152 R 152


>gi|92111858|gb|ABE73673.1| D-alanine:D-alanine ligase [Streptococcus vestibularis]
          Length = 152

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/123 (28%), Positives = 65/123 (52%), Gaps = 8/123 (6%)

Query: 127 PYVIKPLKGGSSLGIIVIKKDQSI--PLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
           P  +KP   GSS+GI  ++ +  +   +DL    +  +  ++LIEQ V   E+  G++G+
Sbjct: 34  PVFVKPANMGSSVGISKVENEAELRSAIDL----ALKYDSRILIEQGVVAREIEVGILGN 89

Query: 185 ASLDVTEIAVPKSD--FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            ++  T+      D  FY Y+ KY     T  +PA +P ++  +++  A  A +A+G  G
Sbjct: 90  TTVKTTDPGEVVKDVAFYDYQAKYIDNKITMDIPAHVPAEVMAQMRAYAAKAFRALGGCG 149

Query: 243 ISR 245
           ++R
Sbjct: 150 LAR 152


>gi|19351923|emb|CAD19598.1| D-alanine D-alanine ligase [Streptococcus pneumoniae]
 gi|48525854|gb|AAT45137.1| D-alanine D-alanine ligase [Streptococcus mitis]
 gi|48525858|gb|AAT45139.1| D-alanine D-alanine ligase [Streptococcus mitis]
          Length = 147

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 67/133 (50%), Gaps = 6/133 (4%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   K +    L      ++ +  ++L+EQ V+  E+  G
Sbjct: 7   EEKLTYPVFTKPSNMGSSVGIS--KSENQEELRQALELAFQYDSRVLVEQGVNAREIEVG 64

Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           ++G+  +  T   E+ V    FY Y+ KY     T  +PAKI  D    +++ A  A +A
Sbjct: 65  LLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDIPAKISDDEVAVMRQNAETAFRA 123

Query: 238 IGCRGISRSDFLF 250
           IG  G+SR DF +
Sbjct: 124 IGGLGLSRCDFFY 136


>gi|313192171|emb|CBX19945.1| D alanine-D alanine ligase [Clostridium perfringens]
 gi|313192173|emb|CBX19946.1| D alanine-D alanine ligase [Clostridium perfringens]
          Length = 128

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/133 (25%), Positives = 69/133 (51%), Gaps = 6/133 (4%)

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194
           GGSS+   +++  + +   +L++  ++   +++IE+Y+ G E+TC ++    L V  I  
Sbjct: 2   GGSSVATTLVESKEGVKDAVLEALKYDT--EVMIEEYIKGDEITCPIIDGKMLPVLAIK- 58

Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
           PK  F+    KY    +   +  ++  D++KEV+++A   ++ + C   +R D L     
Sbjct: 59  PKGKFFDIASKYEDGGADEFI-VELNEDLHKEVEKMALETYKLLKCDVYARVDMLVK--D 115

Query: 255 RKVFWLEINVQPG 267
              + LE+N  PG
Sbjct: 116 NIPYVLEVNTLPG 128


>gi|313192153|emb|CBX19936.1| D alanine-D alanine ligase [Clostridium perfringens]
          Length = 116

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 57/112 (50%), Gaps = 4/112 (3%)

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
            +  +  +++IE+Y+ G E+TC ++    L V  I  PK  F+    KY    +   +  
Sbjct: 8   EALKYDTEVMIEEYIKGDEITCPIIDGKMLPVLAIK-PKGKFFDIASKYEDGGADEFI-V 65

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
           K+  D++KEV+++A   ++ + C   +R D L        + LE+N  PGMT
Sbjct: 66  KLNEDLHKEVEKMALETYKLLKCDVYARVDMLVK--DNIPYVLEVNTLPGMT 115


>gi|313192157|emb|CBX19938.1| D alanine-D alanine ligase [Clostridium perfringens]
 gi|313192161|emb|CBX19940.1| D alanine-D alanine ligase [Clostridium perfringens]
 gi|313192167|emb|CBX19943.1| D alanine-D alanine ligase [Clostridium perfringens]
          Length = 127

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/132 (25%), Positives = 69/132 (52%), Gaps = 6/132 (4%)

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194
           GGSS+   +++  +++   +L++  ++   +++IE+Y+ G E+TC ++    L V  I  
Sbjct: 2   GGSSVATTLVESKEAVKDAVLEALKYDT--EVMIEEYIKGDEITCPIIDGKMLPVLAIK- 58

Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
           PK  F+    KY    +   +  K+  D++KEV+++A   ++ + C   +R D L     
Sbjct: 59  PKGKFFDIASKYEDGGADEFI-VKLNEDLHKEVEKMALETYKLLKCDVYARVDMLVK--D 115

Query: 255 RKVFWLEINVQP 266
              + LE+N  P
Sbjct: 116 NIPYVLEVNTLP 127


>gi|297170877|gb|ADI21895.1| D-alanine-D-alanine ligase and related ATP-grasp enzymes
           [uncultured gamma proteobacterium HF0130_26L16]
          Length = 211

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/108 (34%), Positives = 59/108 (54%), Gaps = 9/108 (8%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+ F +LHG  GEDG VQ +LEL +  Y  +G+ ASA+ MDK  ++ V +  G+     +
Sbjct: 95  DVVFPLLHGPRGEDGSVQGLLELADAAYVGAGVAASAVGMDKELARAVFAQAGLRQTEYL 154

Query: 112 LVNR--FTMDSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSI 150
           ++ R  ++ D Q  +         P  +KP+  GSS+GI  +   QS+
Sbjct: 155 VIRRSAWSADRQGALEEIEAKLRYPLFVKPVNLGSSIGISKVHDSQSL 202


>gi|92111826|gb|ABE73657.1| D-alanine:D-alanine ligase [Streptococcus salivarius]
          Length = 152

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/121 (28%), Positives = 61/121 (50%), Gaps = 4/121 (3%)

Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186
           P  +KP   GSS+GI   K +    L      +  +  ++LIEQ V   E+  G++G+ +
Sbjct: 34  PVFVKPANMGSSVGIS--KAENEAELRAAIDLALKYDSRILIEQGVVAREIEVGILGNTT 91

Query: 187 LDVTEIA--VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244
           +  T+    V    FY Y+ KY     T  +PA +P ++  +++  A  A +A+G  G++
Sbjct: 92  VKTTDPGEVVKDVAFYDYQAKYIDNKITMDIPAHVPAEVMTQMRAYAAKAFRALGGCGLA 151

Query: 245 R 245
           R
Sbjct: 152 R 152


>gi|92111860|gb|ABE73674.1| D-alanine:D-alanine ligase [Streptococcus vestibularis]
          Length = 152

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/121 (28%), Positives = 61/121 (50%), Gaps = 4/121 (3%)

Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186
           P  +KP   GSS+GI   K +    L      +  +  ++LIEQ V   E+  G++G+ +
Sbjct: 34  PVFVKPANMGSSVGIS--KAENEAELRAAIDLALKYDSRILIEQGVVAREIEVGILGNTT 91

Query: 187 LDVTEIA--VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244
           +  T+    V    FY Y+ KY     T  +PA +P ++  +++  A  A +A+G  G++
Sbjct: 92  VKTTDPGEVVKDVAFYDYQAKYIDNKITMDIPAHVPAEVMAQMRAYAAKAFRALGGCGLA 151

Query: 245 R 245
           R
Sbjct: 152 R 152


>gi|92111878|gb|ABE73683.1| D-alanine:D-alanine ligase [Streptococcus salivarius]
          Length = 152

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/121 (28%), Positives = 61/121 (50%), Gaps = 4/121 (3%)

Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186
           P  +KP   GSS+GI   K +    L      +  +  ++LIEQ V   E+  G++G+ +
Sbjct: 34  PVFVKPANMGSSVGIS--KAENEAELRAAIDLALKYDSRILIEQGVVAREIEVGILGNTT 91

Query: 187 LDVTEIA--VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244
           +  T+    V    FY Y+ KY     T  +PA +P ++  +++  A  A +A+G  G++
Sbjct: 92  VKTTDPGEVVKDVAFYDYQAKYIDNKITMDIPAHVPAEVMTQMRAYAAKAFRALGGCGLA 151

Query: 245 R 245
           R
Sbjct: 152 R 152


>gi|92111854|gb|ABE73671.1| D-alanine:D-alanine ligase [Streptococcus salivarius]
          Length = 152

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/121 (28%), Positives = 61/121 (50%), Gaps = 4/121 (3%)

Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186
           P  +KP   GSS+GI   K +    L      +  +  ++LIEQ V   E+  G++G+ +
Sbjct: 34  PVFVKPANMGSSVGIS--KAENEAELRAAIDLALKYDSRILIEQGVVAREIEVGILGNTN 91

Query: 187 LDVTEIAVPKSD--FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244
           +  T+      D  FY Y+ KY     T  +PA +P ++  +++  A  A +A+G  G++
Sbjct: 92  VKTTDPGEVVKDVAFYDYQAKYIDNKITMDIPAHVPAEVMTQMRAYAAKAFRALGGCGLA 151

Query: 245 R 245
           R
Sbjct: 152 R 152


>gi|92111836|gb|ABE73662.1| D-alanine:D-alanine ligase [Streptococcus salivarius]
          Length = 152

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/121 (28%), Positives = 61/121 (50%), Gaps = 4/121 (3%)

Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186
           P  +KP   GSS+GI   K +    L      +  +  ++LIEQ V   E+  G++G+ +
Sbjct: 34  PVFVKPANMGSSVGIS--KAENEAELRAAIDLALKYDSRILIEQGVVAREIEVGILGNTN 91

Query: 187 LDVTEIA--VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244
           +  T+    V    FY Y+ KY     T  +PA +P ++  +++  A  A +A+G  G++
Sbjct: 92  VKTTDPGEVVKDVAFYDYQAKYIDNKITMDIPAHVPAEVMTQMRSYAAKAFRALGGCGLA 151

Query: 245 R 245
           R
Sbjct: 152 R 152


>gi|92111872|gb|ABE73680.1| D-alanine:D-alanine ligase [Streptococcus salivarius]
          Length = 152

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/121 (28%), Positives = 61/121 (50%), Gaps = 4/121 (3%)

Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186
           P  +KP   GSS+GI   K +    L      +  +  ++LIEQ V   E+  G++G+ +
Sbjct: 34  PVFVKPANMGSSVGIS--KAENEAELRAAIDLALKYDSRILIEQGVVAREIEVGILGNTT 91

Query: 187 LDVTEIA--VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244
           +  T+    V    FY Y+ KY     T  +PA +P ++  +++  A  A +A+G  G++
Sbjct: 92  VKTTDPGEVVKDVAFYDYQAKYIDNKITMDIPAHVPAEVMTQMRTYAAKAFRALGGCGLA 151

Query: 245 R 245
           R
Sbjct: 152 R 152


>gi|3821373|emb|CAA13253.1| D-alanine D-alanine ligase [Streptococcus pneumoniae]
          Length = 147

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/133 (29%), Positives = 67/133 (50%), Gaps = 6/133 (4%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   K +    L      ++ +  ++L+EQ V+  E+  G
Sbjct: 7   EEKLTYPVFTKPSNMGSSVGIS--KSENQEELRQALKLAFQYDSRVLVEQGVNAREIEVG 64

Query: 181 VMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           ++G+  +  T   E+ V    FY Y+ KY     +  +PA I  ++   ++R A  A +A
Sbjct: 65  LLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKISMDIPANISDEVIAVMRRNAETAFRA 123

Query: 238 IGCRGISRSDFLF 250
           IG  G+SR DF +
Sbjct: 124 IGGLGLSRCDFFY 136


>gi|92111862|gb|ABE73675.1| D-alanine:D-alanine ligase [Streptococcus vestibularis]
          Length = 152

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/121 (28%), Positives = 61/121 (50%), Gaps = 4/121 (3%)

Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186
           P  +KP   GSS+GI   K +    L      +  +  ++LIEQ V   E+  G++G+ +
Sbjct: 34  PVFVKPANMGSSVGIS--KAENEAELHAAIDLALKYDSRILIEQGVVAREIEVGILGNTT 91

Query: 187 LDVTEIAVPKSD--FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244
           +  T+      D  FY Y+ KY     T  +PA +P ++  +++  A  A +A+G  G++
Sbjct: 92  VKTTDPGEVVKDVAFYDYQAKYIDNKITMDIPAHVPAEVMTQMRAYAAKAFRALGGCGLA 151

Query: 245 R 245
           R
Sbjct: 152 R 152


>gi|92111864|gb|ABE73676.1| D-alanine:D-alanine ligase [Streptococcus vestibularis]
          Length = 152

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/121 (28%), Positives = 61/121 (50%), Gaps = 4/121 (3%)

Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186
           P  +KP   GSS+GI   K +    L      +  +  ++LIEQ V   E+  G++G+ +
Sbjct: 34  PVFVKPANMGSSVGIS--KAENEAELRAAIDLALKYDSRILIEQGVVAREIEVGILGNTT 91

Query: 187 LDVTEIA--VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244
           +  T+    V    FY Y+ KY     T  +PA +P ++  +++  A  A +A+G  G++
Sbjct: 92  VKTTDPGEVVKDVAFYDYQAKYIDNKITMDIPAHVPAEVMAQMRAYAAKAFRALGGCGLA 151

Query: 245 R 245
           R
Sbjct: 152 R 152


>gi|92111832|gb|ABE73660.1| D-alanine:D-alanine ligase [Streptococcus vestibularis]
          Length = 152

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/121 (28%), Positives = 61/121 (50%), Gaps = 4/121 (3%)

Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186
           P  +KP   GSS+GI   K +    L      +  +  ++LIEQ V   E+  G++G+ +
Sbjct: 34  PVFVKPANMGSSVGIS--KAENEAELRAAIDLALKYDSRILIEQGVVAREIEVGILGNTN 91

Query: 187 LDVTEIA--VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244
           +  T+    V    FY Y+ KY     T  +PA +P ++  +++  A  A +A+G  G++
Sbjct: 92  VKTTDPGEVVKDVAFYDYQAKYIDNKITMDIPAHVPAEVMTQMRAYAAKAFRALGGCGLA 151

Query: 245 R 245
           R
Sbjct: 152 R 152


>gi|92111840|gb|ABE73664.1| D-alanine:D-alanine ligase [Streptococcus salivarius]
 gi|92111848|gb|ABE73668.1| D-alanine:D-alanine ligase [Streptococcus salivarius]
 gi|92111852|gb|ABE73670.1| D-alanine:D-alanine ligase [Streptococcus salivarius]
          Length = 152

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/121 (28%), Positives = 61/121 (50%), Gaps = 4/121 (3%)

Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186
           P  +KP   GSS+GI   K +    L      +  +  ++LIEQ V   E+  G++G+ +
Sbjct: 34  PVFVKPANMGSSVGIS--KAENEAELRAAIDLALKYDSRILIEQGVVAREIEVGILGNTN 91

Query: 187 LDVTEIAVPKSD--FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244
           +  T+      D  FY Y+ KY     T  +PA +P ++  +++  A  A +A+G  G++
Sbjct: 92  VKTTDPGEVVKDVAFYDYQAKYIDNKITMDIPAHVPAEVMTQMRAYAAKAFRALGGCGLA 151

Query: 245 R 245
           R
Sbjct: 152 R 152


>gi|83414209|dbj|BAE53895.1| D-alanine:D-alanine ligase [Streptococcus mutans]
 gi|83415068|dbj|BAE53793.1| D-alanine:D-alanine ligase [Streptococcus mutans]
          Length = 96

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/90 (36%), Positives = 50/90 (55%), Gaps = 4/90 (4%)

Query: 162 HGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAK 218
           +  ++LIEQ VD  E+  G++G+  +  T   EI V    FY YE KY     T  +PA+
Sbjct: 8   YDSRVLIEQGVDAREIEVGILGNTDVKTTLPGEI-VKDVAFYDYEAKYIDNKITMAIPAE 66

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           I   I ++++  A  A + +GC G+SR DF
Sbjct: 67  IDPVIVEKMRDYAATAFRTLGCCGLSRCDF 96


>gi|92111874|gb|ABE73681.1| D-alanine:D-alanine ligase [Streptococcus salivarius]
 gi|92111876|gb|ABE73682.1| D-alanine:D-alanine ligase [Streptococcus salivarius]
 gi|92111880|gb|ABE73684.1| D-alanine:D-alanine ligase [Streptococcus salivarius]
          Length = 152

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/121 (28%), Positives = 61/121 (50%), Gaps = 4/121 (3%)

Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186
           P  +KP   GSS+GI   K +    L      +  +  ++LIEQ V   E+  G++G+ +
Sbjct: 34  PVFVKPANMGSSVGIS--KAENEAELRAAIDLALKYDSRILIEQGVVAREIEVGILGNTT 91

Query: 187 LDVTEIA--VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244
           +  T+    V    FY Y+ KY     T  +PA +P ++  +++  A  A +A+G  G++
Sbjct: 92  VKTTDPGEVVKDVAFYDYQAKYIDNKITMDIPAHVPAEVMTQMRAYAAKAFRALGGCGLA 151

Query: 245 R 245
           R
Sbjct: 152 R 152


>gi|92111824|gb|ABE73656.1| D-alanine:D-alanine ligase [Streptococcus salivarius]
          Length = 152

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/121 (28%), Positives = 61/121 (50%), Gaps = 4/121 (3%)

Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186
           P  +KP   GSS+GI   K +    L      +  +  ++LIEQ V   E+  G++G+ +
Sbjct: 34  PVFVKPANMGSSVGIS--KAENEAELRAAIDLALKYDSRILIEQGVVAREIEVGILGNTT 91

Query: 187 LDVTEIA--VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244
           +  T+    V    FY Y+ KY     T  +PA +P ++  +++  A  A +A+G  G++
Sbjct: 92  VKTTDPGEVVKDVAFYDYQAKYIDNKITMDIPAHVPAEVMTQMRAYAAKAFRALGGCGLA 151

Query: 245 R 245
           R
Sbjct: 152 R 152


>gi|92111830|gb|ABE73659.1| D-alanine:D-alanine ligase [Streptococcus salivarius]
 gi|92111834|gb|ABE73661.1| D-alanine:D-alanine ligase [Streptococcus salivarius]
 gi|92111838|gb|ABE73663.1| D-alanine:D-alanine ligase [Streptococcus salivarius]
 gi|92111842|gb|ABE73665.1| D-alanine:D-alanine ligase [Streptococcus salivarius]
 gi|92111844|gb|ABE73666.1| D-alanine:D-alanine ligase [Streptococcus salivarius]
 gi|92111846|gb|ABE73667.1| D-alanine:D-alanine ligase [Streptococcus salivarius]
          Length = 152

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/121 (28%), Positives = 61/121 (50%), Gaps = 4/121 (3%)

Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186
           P  +KP   GSS+GI   K +    L      +  +  ++LIEQ V   E+  G++G+ +
Sbjct: 34  PVFVKPANMGSSVGIS--KAENEAELRAAIDLALKYDSRILIEQGVVAREIEVGILGNTN 91

Query: 187 LDVTEIAVPKSD--FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244
           +  T+      D  FY Y+ KY     T  +PA +P ++  +++  A  A +A+G  G++
Sbjct: 92  VKTTDPGEVVKDVAFYDYQAKYIDNKITMDIPAHVPAEVMTQMRAYAAKAFRALGGCGLA 151

Query: 245 R 245
           R
Sbjct: 152 R 152


>gi|92111850|gb|ABE73669.1| D-alanine:D-alanine ligase [Streptococcus salivarius]
          Length = 152

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/121 (28%), Positives = 60/121 (49%), Gaps = 4/121 (3%)

Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186
           P  +KP   GSS+GI   K +    L      +  +  ++LIEQ V   E+  G++G+ +
Sbjct: 34  PVFVKPANMGSSVGIS--KAENEAELRAAIDLALKYDSRILIEQGVVAREIEVGILGNTT 91

Query: 187 LDVTEIA--VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244
           +  T     V    FY Y+ KY     T  +PA +P ++  +++  A  A +A+G  G++
Sbjct: 92  VKTTNPGEVVKDVAFYDYQAKYIDNKITMDIPAHVPAEVMTQMRAYAAKAFRALGGCGLA 151

Query: 245 R 245
           R
Sbjct: 152 R 152


>gi|92111828|gb|ABE73658.1| D-alanine:D-alanine ligase [Streptococcus salivarius]
          Length = 152

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/123 (28%), Positives = 64/123 (52%), Gaps = 8/123 (6%)

Query: 127 PYVIKPLKGGSSLGIIVIKKDQSI--PLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
           P  +KP   GSS+GI   + +  +   +DL    +  +  ++LIEQ V   E+  G++G+
Sbjct: 34  PVFVKPANMGSSVGISKAENESELRAAIDL----ALKYDSRILIEQGVVAREIEVGILGN 89

Query: 185 ASLDVTEIAVPKSD--FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            ++  T+      D  FY Y+ KY     T  +PA +P ++  +++  A  A +A+G  G
Sbjct: 90  TNIKTTDPGEVVKDVAFYDYQAKYIDNKITMDIPAHVPAEVMTQMRAYAAKAFRALGGCG 149

Query: 243 ISR 245
           ++R
Sbjct: 150 LAR 152


>gi|328774412|gb|EGF84449.1| hypothetical protein BATDEDRAFT_34316 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 790

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 73/346 (21%), Positives = 132/346 (38%), Gaps = 55/346 (15%)

Query: 3   VLMGGIS---------SEREVSLSSGKACASALEDAGFKVSQ---IDVDRSVGLVLAHLK 50
           VLMG  S         +  +  + + K    AL D G+   Q   ID  + +   L+   
Sbjct: 435 VLMGDTSMPCVGKLGDTWNQEDIETRKQLVKALYDIGYSDEQLEIIDTHKDLVHTLSEKS 494

Query: 51  PDLAFNVLHGNFGEDGL----VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP 106
                N     +  D L    + A+L++  I Y+ +G     +  DK        + GVP
Sbjct: 495 VSFVLNFCDEGYQNDALKEMHIPALLDMANIQYSGAGPNCLTICYDKGLVNSTARTLGVP 554

Query: 107 ----------VCPSILVNRFTMDS--QHLISPPYVIKPLKGGSSLGII---VIKKDQSIP 151
                     V  S + +   +D   +  I  P  IKP+KG +SLGI    +I     + 
Sbjct: 555 TPREMTYLSDVATSAVADLNKVDQLIREQILYPAFIKPIKGDNSLGITSRSIIHNKAELA 614

Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDF-----------Y 200
             + + S     D +L+++Y+ G E   G++G++          K D+            
Sbjct: 615 SYMDELSGIGIRD-VLVQEYLTGTEYGIGMVGNSETGFHFFPTLKVDYSKIVEKQLEPIL 673

Query: 201 SYELKYSS----LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF------ 250
            YE K+       +    + A +  ++  ++++   +  +  GCR  +R DF        
Sbjct: 674 GYESKWDPSSPYWSDISYVAANLSAEVDNDLRKACVVLWKRFGCRDYARFDFRSDVGTGD 733

Query: 251 --DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             D L   +  LE+N  PG         MA   G  ++++L  +++
Sbjct: 734 NKDGLGGTIKLLEVNPNPGWCWDGKLAYMAKLDGIEYKDMLRMIIQ 779


>gi|92111866|gb|ABE73677.1| D-alanine:D-alanine ligase [Streptococcus vestibularis]
          Length = 152

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/121 (28%), Positives = 61/121 (50%), Gaps = 4/121 (3%)

Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186
           P  +KP   GSS+GI   K +    L      +  +  ++LIEQ V   E+  G++G+ +
Sbjct: 34  PVFVKPANMGSSVGIS--KAENEAGLHAAIDLALKYDSRILIEQGVVAREIEVGILGNTT 91

Query: 187 LDVTEIA--VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244
           +  T+    V    FY Y+ KY     T  +PA +P ++  +++  A  A +A+G  G++
Sbjct: 92  VKTTDPGEVVKDVAFYDYQAKYIDNKITMDIPAHVPAEVMTQMRAYAAKAFRALGGCGLA 151

Query: 245 R 245
           R
Sbjct: 152 R 152


>gi|92111882|gb|ABE73685.1| D-alanine:D-alanine ligase [Streptococcus salivarius]
          Length = 152

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/121 (28%), Positives = 61/121 (50%), Gaps = 4/121 (3%)

Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186
           P  +KP   GSS+GI   K +    L      +  +  ++LIEQ V   E+  G++G+ +
Sbjct: 34  PVFVKPANMGSSVGIS--KAENEAELRAAIDLALKYDSRILIEQGVVAREIEVGILGNTT 91

Query: 187 LDVTEIAVPKSD--FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244
           +  T+      D  FY Y+ KY     T  +PA +P ++  +++  A  A +A+G  G++
Sbjct: 92  VKTTDPGEVVKDVAFYDYQAKYIDNKITMDIPAHMPAEVMTQMRAYAAKAFRALGGCGLA 151

Query: 245 R 245
           R
Sbjct: 152 R 152


>gi|92111868|gb|ABE73678.1| D-alanine:D-alanine ligase [Streptococcus salivarius]
 gi|92111870|gb|ABE73679.1| D-alanine:D-alanine ligase [Streptococcus salivarius]
          Length = 152

 Score = 53.5 bits (127), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/121 (28%), Positives = 61/121 (50%), Gaps = 4/121 (3%)

Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186
           P  +KP   GSS+GI   K +    L      +  +  ++LIEQ V   E+  G++G+ +
Sbjct: 34  PVFVKPANMGSSVGIS--KAENEAELRAAIDLALKYDSRILIEQGVVAREIEVGILGNTT 91

Query: 187 LDVTEIA--VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244
           +  T+    V    FY Y+ KY     T  +PA +P ++  +++  A  A +A+G  G++
Sbjct: 92  VKTTDPGEVVKDVAFYDYQAKYIDNKITMDIPAHVPAEVMTQMRVYAAKAFRALGGCGLA 151

Query: 245 R 245
           R
Sbjct: 152 R 152


>gi|313192155|emb|CBX19937.1| D alanine-D alanine ligase [Clostridium perfringens]
          Length = 127

 Score = 53.5 bits (127), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 34/132 (25%), Positives = 68/132 (51%), Gaps = 6/132 (4%)

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194
           GGSS+   +++  +++   +L++  ++   +++IE+Y+ G E+TC ++    L V  I  
Sbjct: 2   GGSSVATTLVESKEAVKDAVLEALKYDT--EVMIEEYIKGDEITCPIIDGKMLPVLAIK- 58

Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
           PK  F+    KY    +   +  K+  D+ KEV+++A   ++ + C   +R D L     
Sbjct: 59  PKGKFFDIASKYEDGGADEFI-VKLNEDLNKEVEKMALETYKLLKCDVYARVDMLVK--D 115

Query: 255 RKVFWLEINVQP 266
              + LE+N  P
Sbjct: 116 NIPYVLEVNTLP 127


>gi|83414029|dbj|BAE53805.1| D-alanine:D-alanine ligase [Streptococcus mitis]
          Length = 96

 Score = 53.1 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 33/93 (35%), Positives = 53/93 (56%), Gaps = 4/93 (4%)

Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVL 215
           ++ +  ++L+EQ V+  E+  G++G+  +  T   E+ V   DFY Y+ KY     T  +
Sbjct: 5   AFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVDFYDYDAKYIDNKITMDI 63

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           PAKI  D+   ++R A  A +AIG  G+SR DF
Sbjct: 64  PAKISDDVIAVMRRNAETAFRAIGGLGLSRCDF 96


>gi|284036028|ref|YP_003385958.1| D-alanine--D-alanine ligase [Spirosoma linguale DSM 74]
 gi|283815321|gb|ADB37159.1| D-alanine--D-alanine ligase domain protein [Spirosoma linguale DSM
           74]
          Length = 551

 Score = 53.1 bits (126), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 46/202 (22%), Positives = 84/202 (41%), Gaps = 57/202 (28%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD--------------------- 39
           + +  GG + EREVS + G+   + L+   F+   + VD                     
Sbjct: 3   IGIFFGGPAREREVSFAGGRTALANLDKGLFEPVLVFVDGRGRFRLVSPDFLQSPSLHDA 62

Query: 40  -----------------RSVGLVLAHLKP-------DLAFNVLHGNFGEDGLVQAILELL 75
                             ++  +L  L+P       DLAF  +HG   EDG +Q +LE  
Sbjct: 63  LPQDSSGFSVYDESLAVDTLDAILPELRPEQFRDHFDLAFLAMHGPDCEDGAIQGLLEWH 122

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR-----------FTMDSQHLI 124
           ++PYT  G++ SA+ ++K+   ++++        +  ++R           F    +HL 
Sbjct: 123 KMPYTGPGLVGSAVGINKILQNELIALANGQKKKTATISRDDYEQADKAQFFQSLVEHL- 181

Query: 125 SPPYVIKPLKGGSSLGIIVIKK 146
             P VIK    GSS+G+ ++++
Sbjct: 182 GLPIVIKAPHQGSSIGVAIVRE 203


>gi|261885497|ref|ZP_06009536.1| D-alanyl-alanine synthetase A [Campylobacter fetus subsp.
           venerealis str. Azul-94]
          Length = 166

 Score = 53.1 bits (126), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 30/121 (24%), Positives = 60/121 (49%), Gaps = 5/121 (4%)

Query: 56  NVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR 115
           N++ G  GEDG +  + E   + +    + AS +S +K  ++ +   C V   P  ++ R
Sbjct: 42  NLIRGRDGEDGKIAGMFEFYNVTFIGHRLEASVMSFNKELTQLLAHKCAVKSLPYEMIKR 101

Query: 116 FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175
             +    L   P+++KP + GSS+G+ V++   +  LD     ++     +L+E + +GI
Sbjct: 102 GDIVKTEL---PFILKPARLGSSIGVSVVRDISN--LDYALDVAFEFDKDILVEPFKEGI 156

Query: 176 E 176
            
Sbjct: 157 R 157


>gi|313192175|emb|CBX19947.1| D alanine-D alanine ligase [Clostridium perfringens]
          Length = 125

 Score = 52.8 bits (125), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 30/115 (26%), Positives = 63/115 (54%), Gaps = 4/115 (3%)

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194
           GGSS+   +++  +++   +L++  ++   +++IE+Y+ G E+TC ++    L V  I  
Sbjct: 2   GGSSVATTLVESKEAVKDAVLEALKYDT--EVMIEEYIKGDEITCPIIDGKMLPVLAIK- 58

Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
           PK  F+    KY    +   +  K+  D++KEV+++A   ++ + C   +R D L
Sbjct: 59  PKGKFFDIASKYEDGGADEFI-VKLNEDLHKEVEKMALETYKLLKCDVYARVDML 112


>gi|313192165|emb|CBX19942.1| D alanine-D alanine ligase [Clostridium perfringens]
 gi|313192177|emb|CBX19948.1| D alanine-D alanine ligase [Clostridium perfringens]
          Length = 121

 Score = 52.8 bits (125), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 30/115 (26%), Positives = 63/115 (54%), Gaps = 4/115 (3%)

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194
           GGSS+   +++  +++   +L++  ++   +++IE+Y+ G E+TC ++    L V  I  
Sbjct: 2   GGSSVATTLVESKEAVKDAVLEALKYDT--EVMIEEYIKGDEITCPIIDGKMLPVLAIK- 58

Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
           PK  F+    KY    +   +  K+  D++KEV+++A   ++ + C   +R D L
Sbjct: 59  PKGKFFDIASKYEDGGADEFI-VKLNEDLHKEVEKMALETYKLLKCDVYARVDML 112


>gi|253755099|ref|YP_003028239.1| D-alanine--D-alanine ligase [Streptococcus suis BM407]
 gi|251817563|emb|CAZ55310.1| putative D-alanine--D-alanine ligase [Streptococcus suis BM407]
          Length = 316

 Score = 52.8 bits (125), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 59/255 (23%), Positives = 109/255 (42%), Gaps = 35/255 (13%)

Query: 57  VLHGNFG-----EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           VL+ +FG      +  V A  E   I Y +       L  DK  +++   + GV V  S+
Sbjct: 66  VLNFDFGYKSRTRNMNVPAFCENYNIKYFNPDPYVQVLCQDKFMTEKFAENFGVTVPNSL 125

Query: 112 LVNRFTMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSWNHGDQ 165
           LV + +     L  ++ P +IKP     S+GI    +D  +      D +    +   D 
Sbjct: 126 LVFKHSYQKNLLKDLNYPLIIKPNYESESIGIT---QDSIVENPGDADTIIGKLFKEFDG 182

Query: 166 LLIEQYVDGIELTCGVMGDAS---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD 222
           +L+E+Y++G E+   +  +      +  E+  P+ +    E+KY +  S   +  KI + 
Sbjct: 183 ILVEEYIEGKEVAITIWDNGEEIFFEEVELIFPRLE----EIKYQAYTSE--IKQKIGI- 235

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR--------KVFWLEINVQPGMTPVSIF 274
              E+++  +L+ + I        +   + L R        K + +EIN  PG+ P S+ 
Sbjct: 236 ---EIKKSCYLSDKDIINLKQLYKNLSPNKLIRIDGRIKNSKFYLIEINANPGLYPKSVV 292

Query: 275 PEMAAYAGYSFRELL 289
           P+     GY +  +L
Sbjct: 293 PKTFLINGYDYETML 307


>gi|325003336|ref|ZP_08124448.1| D-alanine--D-alanine ligase domain-containing protein
           [Pseudonocardia sp. P1]
          Length = 346

 Score = 52.8 bits (125), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 50/189 (26%), Positives = 87/189 (46%), Gaps = 19/189 (10%)

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVM 182
           + PP VIKP+   +S+G+ + + D++I + +    +  H ++ L+EQ+V  G E+ CG++
Sbjct: 149 LRPPLVIKPVDTDNSVGVTLAETDETIEVAI--KDALAHSERALVEQFVPLGREVRCGII 206

Query: 183 ---GD-ASLDVTEIAVPKSD----FYSYELKYSSLNSTHVLPAK------IPLD-IYKEV 227
              GD   L + E  +  +D        +L  S+     ++          P D +   V
Sbjct: 207 DRGGDLVGLPLEEYRMDPTDKPIRLADDKLDRSATGDLRLVAKDDRSWIVDPADPLTATV 266

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287
              A  A++A+GCR     DF  DP  R +++LE  +       S+   MA  A    RE
Sbjct: 267 HDAARRAYRALGCRHYGLFDFRVDPNGR-LYFLEAGLYCSFAHSSVVATMAHAAATPVRE 325

Query: 288 LLLWMVEDA 296
           L   ++  A
Sbjct: 326 LFADLISAA 334


>gi|56368334|emb|CAF02124.1| D-alanine-D-alanine ligase [Oenococcus oeni]
          Length = 147

 Score = 52.4 bits (124), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 42/68 (61%)

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV 105
           + +LK D+ F  +HGN GEDG +  +  L+ IP   SG+ A A+S DK+ +K++++  G+
Sbjct: 47  IRNLKLDVLFPSVHGNLGEDGTLAGLFRLMNIPNVGSGLRAHAISFDKVITKELMTVNGI 106

Query: 106 PVCPSILV 113
                I++
Sbjct: 107 RNTKYIVI 114


>gi|332703218|ref|ZP_08423306.1| D-alanine--D-alanine ligase domain protein [Desulfovibrio africanus
           str. Walvis Bay]
 gi|332553367|gb|EGJ50411.1| D-alanine--D-alanine ligase domain protein [Desulfovibrio africanus
           str. Walvis Bay]
          Length = 341

 Score = 52.4 bits (124), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 66/259 (25%), Positives = 110/259 (42%), Gaps = 31/259 (11%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ---AILELLEIPYTHSGILASALSMD 92
           +D+D + G  LA ++P+  FN++    G   L     A+LE + +P+T  G  +  LS  
Sbjct: 45  LDLDDARG-TLAAMRPNCVFNLVEDVGGSSRLAHLAPALLEHMGMPFTGCGSESMLLSTS 103

Query: 93  KMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQ-SIP 151
           K+  K+V+++ G+P  P    +    +    +   Y++K +   +SLG+      Q S P
Sbjct: 104 KLACKRVLTAAGIPTPP---WSEGLPEETSFVPGRYILKSVYEHASLGLDETSVVQASSP 160

Query: 152 LDL---LQSSSWNHGDQLLIEQYVDGIELTCGVM----GDASLDVTEI-----AVPKSDF 199
            DL   L       G +   E +VDG E    V+    G   L   EI     +  +   
Sbjct: 161 ADLAKPLARRRERFGGRWFAEGFVDGREFNIAVIDGPNGPEVLPHAEIVFRGFSKERLRI 220

Query: 200 YSYELKYSSLNSTHVLPAKIPLDIY-KEVQRLAFLAHQAIGC------RGISRSDFLFDP 252
             Y  K+   +S      +   D   K+ Q LA L+  A+GC       G +R DF    
Sbjct: 221 VGYRAKWDE-DSFEYENTQRRFDFPDKDAQILAQLSQSALGCWRAFGLTGYARVDFRV-- 277

Query: 253 LSRKVFW-LEINVQPGMTP 270
                 W +++N  P ++P
Sbjct: 278 AEDGTPWIIDVNANPCLSP 296


>gi|330814383|ref|YP_004358622.1| D-alanine--D-alanine ligase [Candidatus Pelagibacter sp. IMCC9063]
 gi|327487478|gb|AEA81883.1| D-alanine--D-alanine ligase [Candidatus Pelagibacter sp. IMCC9063]
          Length = 370

 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 68/272 (25%), Positives = 119/272 (43%), Gaps = 31/272 (11%)

Query: 46  LAHLKPDLAFN-VLHGNFGEDGL-VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103
           LA  KPDL F+ V +  F E  + +   LE   I Y  SG  A     DK R+K+++   
Sbjct: 85  LAIRKPDLVFSGVKYFTFNERIIWLNDYLETHGISYIASGREALEYEHDKSRAKEIMQKA 144

Query: 104 GVPVCPSILVNRFTM------DSQHL-ISPPYVIKPLKGGSSLGI---IVIKKDQSIPLD 153
            +        + FT       D + L +  P  +KP+ GG S GI    V+   +S    
Sbjct: 145 DIKTA-----DFFTTEPGEYPDQESLPVKFPLFVKPVTGGDSRGIDFKSVVHDFKSFEAK 199

Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA---SLDV--TEIAVPKSD----FYSYEL 204
           +L           L+E ++ G E + G++ D+   +L+    EI V K+        +++
Sbjct: 200 VLD-IKMKQKSTSLVETFLSGKEYSVGILQDSFSGTLNAMPVEIMVDKNINGHCILDFDI 258

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K    N   V+ A    +I+ ++  LA  +  A+G + + R D   + L+   F +E N+
Sbjct: 259 KK---NDEEVVIAVTDKEIFNQLCNLAKKSFIALGGKSLGRIDIKMNHLNEPHF-IEANL 314

Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            PG++    F         S+ E++L + ++ 
Sbjct: 315 MPGLSKGYFFRSCFLNLNMSYEEMILLIAKNG 346


>gi|312115133|ref|YP_004012729.1| hypothetical protein Rvan_2406 [Rhodomicrobium vannielii ATCC
           17100]
 gi|311220262|gb|ADP71630.1| hypothetical protein Rvan_2406 [Rhodomicrobium vannielii ATCC
           17100]
          Length = 341

 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 61/250 (24%), Positives = 107/250 (42%), Gaps = 18/250 (7%)

Query: 26  LEDAGFKVSQIDVDRSVGLVLAHLKPDLAF---NVLHGNFGEDGLVQAILELLEIPYTHS 82
           L D G++V        + L+ A  + D+ F   N +  N  E   + ++ E L IPY  +
Sbjct: 55  LRDLGYRVRT--ASEPLALLAAKGEADIVFSLYNRMPINNPEV-FIPSLCEYLRIPYVGA 111

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCP-SILVNRFTMDSQHLISPPYVIKPLKGGSSLGI 141
                AL+ DK  +K    + G+PV   ++  +   + +      PY +K   G +S GI
Sbjct: 112 RPNIRALAEDKWLAKLAAKAIGIPVSEGAVYADEAALATPPGFPGPYFVKQRFGAASEGI 171

Query: 142 IVIK-KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD-VTEIAVPKSD- 198
                +D       + +     G  +L+E Y  GI++T   +G A+   V  +  P+SD 
Sbjct: 172 SAESIQDDWAGAARVAAKLMARGMAVLVEGYAPGIDITVPSLGSANGPLVLGVVRPRSDK 231

Query: 199 ---FYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
                + +LK S      +  A ++  D+  +   L     +A G     R D+ FDP +
Sbjct: 232 AGGIITEDLKRSDPLGYEIFEAGRVEDDLRADAATL----WRATGPMDYFRMDYRFDPET 287

Query: 255 RKVFWLEINV 264
            +  +LE N+
Sbjct: 288 GRRVFLEFNI 297


>gi|83414179|dbj|BAE53880.1| D-alanine:D-alanine ligase [Streptococcus anginosus]
          Length = 96

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/93 (34%), Positives = 52/93 (55%), Gaps = 4/93 (4%)

Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVL 215
           ++ +  ++LIEQ V+  E+  G++G+  +  +   E+ V    FY YE KY   N T  +
Sbjct: 5   AFKYDSRVLIEQGVNAREIEVGLLGNKGVKSSLPGEV-VKDVAFYDYEAKYIDNNITMDI 63

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           PAK+  D+   +++ A  A  AIG  G+SR DF
Sbjct: 64  PAKLSEDVIATMRQYAEKAFHAIGGVGLSRCDF 96


>gi|83414207|dbj|BAE53894.1| D-alanine:D-alanine ligase [Streptococcus mutans]
          Length = 96

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/90 (35%), Positives = 49/90 (54%), Gaps = 4/90 (4%)

Query: 162 HGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAK 218
           +  ++LIEQ VD  E+  G++G+  +  T   EI V    FY YE KY     T  +PA+
Sbjct: 8   YDSRVLIEQGVDAREIEVGILGNTDVKTTLPGEI-VKDVAFYDYEAKYIDNKITMAIPAE 66

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           I   I ++++  A  A + + C G+SR DF
Sbjct: 67  IDPVIVEKMRDYAATAFRTLDCCGLSRCDF 96


>gi|255038681|ref|YP_003089302.1| D-alanine--D-alanine ligase [Dyadobacter fermentans DSM 18053]
 gi|254951437|gb|ACT96137.1| D-alanine--D-alanine ligase [Dyadobacter fermentans DSM 18053]
          Length = 566

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/145 (25%), Positives = 65/145 (44%), Gaps = 9/145 (6%)

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKS------DFYSYELKYSSLNS 211
           SS N  DQ+L+E++V G E +CG +     D + +A+P S      + + +  KY    S
Sbjct: 291 SSSNAEDQVLVEEFVSGQEFSCGCI--QFDDGSPLALPPSEVIKMVEVFDFNTKYKPGAS 348

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271
               P    L+  +E+Q++     + +G     R D    P    +   + N  PGM+P 
Sbjct: 349 RKRTPVGTTLEKNREIQQMIAATFRQLGIDACVRIDGFLKP-DGTILLHDPNTIPGMSPT 407

Query: 272 SIFPEMAAYAGYSFRELLLWMVEDA 296
           S   +  A  G +  + L ++V  +
Sbjct: 408 SFIFKQMAEIGLTVTQALTYLVRQS 432



 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/110 (31%), Positives = 55/110 (50%), Gaps = 18/110 (16%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS---------- 101
           D AF  +HG   EDG +Q +LE  +IPY+  G++ SA+ +DK+    +++          
Sbjct: 106 DFAFLAMHGPDCEDGAIQGLLEWYKIPYSGPGLMGSAVGIDKILQNDMIALVNGQEKKSW 165

Query: 102 ----SCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147
               S  VP    +L   F +  +HL   P V K    GSS+G+ ++K D
Sbjct: 166 TLKYSQWVPRDYPLL---FQVLKKHL-GLPLVFKAPHQGSSIGVAIVKDD 211


>gi|193872932|gb|ACF23156.1| D-alanine-D-alanine ligase [Streptococcus oralis]
          Length = 96

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/93 (34%), Positives = 53/93 (56%), Gaps = 4/93 (4%)

Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVL 215
           ++ +  ++L+EQ V+  E+  G++G+  +  T   E+ V    FY Y+ KY +   T  +
Sbjct: 5   AFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVAFYDYDAKYINNKITMDI 63

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           PAKI  D+   ++R A  A +AIG  G+SR DF
Sbjct: 64  PAKISDDVVAAMRRNAETAFRAIGGLGLSRCDF 96


>gi|253580995|ref|ZP_04858256.1| D-alanine-D-alanine ligase [Ruminococcus sp. 5_1_39B_FAA]
 gi|251847658|gb|EES75627.1| D-alanine-D-alanine ligase [Ruminococcus sp. 5_1_39BFAA]
          Length = 331

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/163 (24%), Positives = 76/163 (46%), Gaps = 13/163 (7%)

Query: 50  KPDLAFNVLHGNFGED--GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV 107
           + D+ F +  GN   +   LV  I E   I Y  + +    +  DK  SK++    G+ V
Sbjct: 65  RNDIVFTIYGGNSSRNRMALVPGICESYNIKYVGADVYNRIICQDKNISKELAKKAGILV 124

Query: 108 CPSILVN---RFTMDSQHLISPPYVIKPLKGGSSLGII---VIKKDQSIPLDLLQSSSWN 161
             S+ +N        + HL+  P VIKPL  GSS+GI    + +   +I  + ++     
Sbjct: 125 PDSVTINSLDNLNTFNLHLLKYPVVIKPLMEGSSIGITKNSLCQNANNIK-EKIEKLYKT 183

Query: 162 HGDQLLIEQYVDGIELTCGVMGDAS----LDVTEIAVPKSDFY 200
           +   +++EQ++ G E+   ++G +      ++ E+ V + + Y
Sbjct: 184 YNQPIMVEQFIPGKEIVTCLVGSSKNIRLAEMVEVCVEQDNTY 226


>gi|224368435|ref|YP_002602598.1| DdlB1 [Desulfobacterium autotrophicum HRM2]
 gi|223691151|gb|ACN14434.1| DdlB1 [Desulfobacterium autotrophicum HRM2]
          Length = 339

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 74/296 (25%), Positives = 121/296 (40%), Gaps = 37/296 (12%)

Query: 21  ACASALEDAGFKVSQIDVD---RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLE- 76
           A + AL   G++   +  D    ++   L  +KP + FN++    G   L+Q +  L+E 
Sbjct: 29  AVSQALSGLGYEPIAVPCDLDLNALKQTLTAMKPAVVFNLVESLDGHGRLIQVVPALVEA 88

Query: 77  IPYTHSGILASA--LSMDKMRSKQVVSSCGVPVCPSILVNRFTMD----SQHLISP--PY 128
           + Y  +G  A A  L+  K+ +K+ + S G+P   +  +N   +D        + P   +
Sbjct: 89  LGYACTGCPAEAIYLTSHKVMAKERMRSLGLPT--ADWINPVPLDIPWQGAADLGPTGTW 146

Query: 129 VIKPLKGGSSLGI---IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM--- 182
           +IK L   +SLG+    ++K +      LL   +   G     EQ++ G E    +M   
Sbjct: 147 IIKSLWEHASLGLELENLVKGNSREIAALLPDRASALGGACFAEQFIQGREFNLSLMDTD 206

Query: 183 -GDASLDVTEIAVPKSD-----FYSYELKY--------SSLNSTHVLPAKIPLDIYKEVQ 228
            G   L   EI     D        Y  K+        ++  S    P   PL     ++
Sbjct: 207 KGVRVLPPAEIIFKGFDHDQPKIVGYRAKWVQDAAEYHNTPRSFDFSPKDAPL--IANLE 264

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
           RL+       G RG +R DF  D L    F LE+N  P ++P + F      AG S
Sbjct: 265 RLSLGCWHGFGLRGYARVDFRVDDLGNP-FILEVNTNPCISPDAGFCAALEQAGIS 319


>gi|294101200|ref|YP_003553058.1| D-alanine--D-alanine ligase [Aminobacterium colombiense DSM 12261]
 gi|293616180|gb|ADE56334.1| D-alanine--D-alanine ligase [Aminobacterium colombiense DSM 12261]
          Length = 350

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 69/271 (25%), Positives = 122/271 (45%), Gaps = 30/271 (11%)

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQA----ILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   +P   FN+  G FG +  ++A    ILE   + +T +   A  L +DK    Q + 
Sbjct: 73  INEYQPLCVFNLFEG-FGSEPWLEASFCEILEKNNLTFTGNPSGALRLCIDKHTLHQQLK 131

Query: 102 SCGVPVCPS-ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160
           + G+PV  S  L  + T+ +   IS P  IKP +   S+GI   KK      + LQ S  
Sbjct: 132 TAGIPVPLSYFLKGKETLGTLENISFPLFIKPCREDGSVGI--DKKSLVFNEEELQESVT 189

Query: 161 NH----GDQLLIEQYVDGIELTCGVMGDA--------SLDVTEIAVPKSDFY-SYELKYS 207
                  D +LI++++ G E     + +         +LD +    P+   Y SY+ K++
Sbjct: 190 EKLAKFPDGILIQEFLSGPEYCVSFVDNGPFSPVGLWTLDYSR--YPECPAYLSYDAKWN 247

Query: 208 SLNST--HVLPAKIPLD--IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
             NS   ++ P +I LD  + + +  +A  A    GC+G  R D   +     +F ++IN
Sbjct: 248 E-NSPEWNLWPEEIDLDYSLKETILHMASRAALVAGCKGYFRVDLREN--QGHLFVMDIN 304

Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             P +T  S         G ++ +L++ +++
Sbjct: 305 PNPALTRDSGMARQYMQKGKTYEQLVMKILQ 335


>gi|313192179|emb|CBX19949.1| D alanine-D alanine ligase [Clostridium perfringens]
          Length = 124

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/115 (25%), Positives = 63/115 (54%), Gaps = 4/115 (3%)

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194
           GGSS+   +++  +++   +L++  ++   +++IE+Y+ G E+TC ++    L V  I  
Sbjct: 2   GGSSVATTLVESKEAVKDAVLEALKYDT--EVMIEEYIKGDEITCPIIDGKMLPVLAIK- 58

Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
           PK  F+    KY    +   +  K+  +++KEV+++A   ++ + C   +R D L
Sbjct: 59  PKGKFFDIASKYEDGGADEFI-VKLNENLHKEVEKMALETYKLLKCDVYARVDML 112


>gi|83414023|dbj|BAE53802.1| D-alanine:D-alanine ligase [Streptococcus mitis]
 gi|83414027|dbj|BAE53804.1| D-alanine:D-alanine ligase [Streptococcus mitis]
 gi|83415084|dbj|BAE53801.1| D-alanine:D-alanine ligase [Streptococcus mitis]
 gi|193872876|gb|ACF23128.1| D-alanine-D-alanine ligase [Streptococcus mitis]
 gi|193873028|gb|ACF23204.1| D-alanine-D-alanine ligase [Streptococcus mitis]
 gi|193873076|gb|ACF23228.1| D-alanine-D-alanine ligase [Streptococcus mitis]
 gi|193873086|gb|ACF23233.1| D-alanine-D-alanine ligase [Streptococcus mitis]
          Length = 96

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/93 (34%), Positives = 53/93 (56%), Gaps = 4/93 (4%)

Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVL 215
           ++ +  ++L+EQ V+  E+  G++G+  +  T   E+ V   DFY Y+ KY     T  +
Sbjct: 5   AFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVDFYDYDAKYIDNKITMDI 63

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           PAKI  D+   +++ A  A +AIG  G+SR DF
Sbjct: 64  PAKISDDVVAVMRQNAETAFRAIGGLGLSRCDF 96


>gi|74039799|gb|AAZ94921.1| putative D-alanine:D-lactate ligase [uncultured bacterium]
          Length = 126

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 57/103 (55%), Gaps = 10/103 (9%)

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD----FYSYELKYS----SL 209
           ++  +  ++LIE+ V G E+ C ++G+ S D+    V + D    F+    + S    S 
Sbjct: 17  TARQYDSKILIEEAVVGREIGCAILGEGS-DLIVGEVDRVDLSHGFFRIHQEDSPETGSE 75

Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD-FLFD 251
           NST ++PA IP D  + VQ      ++A+GC+G++R D FL D
Sbjct: 76  NSTFIVPADIPEDSRRLVQETGMAFYRALGCKGLARVDMFLTD 118


>gi|83414081|dbj|BAE53831.1| D-alanine:D-alanine ligase [Streptococcus oralis]
          Length = 96

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 32/93 (34%), Positives = 52/93 (55%), Gaps = 4/93 (4%)

Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVL 215
           ++ +  ++L+EQ V+  E+  G++G+  +  T   E+ V    FY Y+ KY     T  +
Sbjct: 5   AFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVAFYDYDAKYHDNKITMDI 63

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           PAKI  D+   ++R A  A +AIG  G+SR DF
Sbjct: 64  PAKISDDVVAVMRRNAETAFRAIGGLGLSRCDF 96


>gi|313192169|emb|CBX19944.1| D alanine-D alanine ligase [Clostridium perfringens]
          Length = 125

 Score = 50.4 bits (119), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/115 (25%), Positives = 62/115 (53%), Gaps = 4/115 (3%)

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194
           GGSS+   +++  + +   +L++  ++   +++IE+Y+ G E+TC ++    L V  I  
Sbjct: 2   GGSSVATTLVESKEGVKDAVLEALKYDT--EVMIEEYIKGDEITCPIIDGKMLPVLAIK- 58

Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
           PK  F+    KY    +   +  ++  D++KEV+++A   ++ + C   +R D L
Sbjct: 59  PKGKFFDIASKYEDGGADEFI-VELNEDLHKEVEKMALETYKLLKCDVYARVDML 112


>gi|2231975|gb|AAB62169.1| vancomycin resistance protein C2 [Enterococcus casseliflavus]
          Length = 117

 Score = 50.4 bits (119), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/113 (30%), Positives = 58/113 (51%), Gaps = 8/113 (7%)

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSIL-VNRFTMDSQ-----HLISPPYVIKPLKGG 136
           G+ ASAL M+K    Q  ++ GV   P+IL +N+     Q          P   KP + G
Sbjct: 2   GVAASALCMNKWLLHQAAAAIGVQSAPTILLINQANQQEQIEAFIQTHGFPVFFKPNEAG 61

Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           SS GI  +   + I   L ++  + +   +L+++ + G+E+ CG++G+ SL V
Sbjct: 62  SSKGITKVTCVEEIASALKEA--FTYCSAVLLQKNIAGVEIGCGILGNDSLTV 112


>gi|193872862|gb|ACF23121.1| D-alanine-D-alanine ligase [Streptococcus mitis]
          Length = 96

 Score = 50.4 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 32/93 (34%), Positives = 53/93 (56%), Gaps = 4/93 (4%)

Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVL 215
           ++ +  ++L+EQ V+  E+  G++G+  +  T   E+ V   DFY Y+ KY     T  +
Sbjct: 5   AFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVDFYDYDAKYIDNKITMDI 63

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           PAKI  D+   +++ A  A +AIG  G+SR DF
Sbjct: 64  PAKISDDVVVVMRQNAETAFRAIGGLGLSRCDF 96


>gi|322382667|ref|ZP_08056531.1| D-alanine-D-alanine ligase-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
 gi|321153365|gb|EFX45788.1| D-alanine-D-alanine ligase-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
          Length = 125

 Score = 50.4 bits (119), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 1/82 (1%)

Query: 208 SLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPG 267
           S N+  ++PA +  +   ++Q  A   ++A+GC+G+SR D       R +   E+N  PG
Sbjct: 35  SENAVVLVPANLSAEKRIKIQETAKAIYKALGCKGLSRVDMFLQKNGR-IILNEVNTLPG 93

Query: 268 MTPVSIFPEMAAYAGYSFRELL 289
            T  S +P M A AG +   L+
Sbjct: 94  FTVYSRYPRMMAAAGMTLSGLI 115


>gi|7157933|gb|AAF37346.1|AF170807_1 D-alanine:D-alanine ligase [Enterococcus raffinosus]
          Length = 125

 Score = 50.1 bits (118), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 59/117 (50%), Gaps = 6/117 (5%)

Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIA 193
           SS+GI   +  + +  + LQ + + +  + L+EQ +D  E+   V+G+  +  T   EI 
Sbjct: 1   SSVGITRAENREELQ-NALQEA-YRYDSRALVEQGIDAREIEVAVLGNDDVRTTLPGEI- 57

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
           V +  FY Y  KY        +PA IP ++ ++ +  A  A+  +G  G+SR DF  
Sbjct: 58  VKEEAFYDYNAKYIDNTIQMAIPANIPEEVMQKARDYAKSAYTMLGGSGLSRIDFFL 114


>gi|327334539|gb|EGE76250.1| D-alanine--D-alanine ligase B [Propionibacterium acnes HL097PA1]
          Length = 139

 Score = 50.1 bits (118), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 39/136 (28%), Positives = 60/136 (44%), Gaps = 6/136 (4%)

Query: 166 LLIEQYVDGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL 221
           +++E+++ G EL  G++    G   L   EI  P    Y Y   Y+   +    PA I  
Sbjct: 2   VVVEEFIVGTELAIGMITTSEGTRVLPAVEIR-PVGGVYDYSAMYTGGETRLTAPADISD 60

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYA 281
              +    +A +  + +   GISR D + D   R VF LE    PGMT  S+ P     A
Sbjct: 61  TAAQTATAMARVVQKELDFSGISRVDAIVDESGRPVF-LEAGAAPGMTATSLVPVAMKAA 119

Query: 282 GYSFRELLLWMVEDAS 297
           G    E+   +V+D +
Sbjct: 120 GLDLGEVCSRLVDDVA 135


>gi|83414143|dbj|BAE53862.1| D-alanine:D-alanine ligase [Streptococcus sanguinis]
          Length = 96

 Score = 50.1 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 31/93 (33%), Positives = 53/93 (56%), Gaps = 4/93 (4%)

Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVL 215
           ++ +  ++L+EQ V   E+  G++G+  +  T   E+ V    FY YE KY     T  +
Sbjct: 5   AFKYDSRVLVEQGVTAREIEVGLLGNVDVKSTLPGEV-VKDVAFYDYEAKYIDNKITMDI 63

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           PAKIP ++   +++ A +A +A+G  G+SR DF
Sbjct: 64  PAKIPEEVVSLMRQNAEVAFRALGGLGLSRCDF 96


>gi|193872884|gb|ACF23132.1| D-alanine-D-alanine ligase [Streptococcus mitis]
          Length = 96

 Score = 50.1 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 32/93 (34%), Positives = 52/93 (55%), Gaps = 4/93 (4%)

Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVL 215
           ++ +  ++L+EQ V+  E+  G++G+  +  T   E+ V    FY Y+ KY     T  +
Sbjct: 5   AFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDI 63

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           PAKI  D+   ++R A  A +AIG  G+SR DF
Sbjct: 64  PAKISDDVVAVMRRNAETAFRAIGGLGLSRCDF 96


>gi|193873010|gb|ACF23195.1| D-alanine-D-alanine ligase [Streptococcus infantis]
          Length = 96

 Score = 50.1 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 32/93 (34%), Positives = 52/93 (55%), Gaps = 4/93 (4%)

Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVL 215
           ++ +  ++L+EQ V+  E+  G++G+  +  T   E+ V    FY YE KY     T  +
Sbjct: 5   AFKYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVAFYDYEAKYIDNKITMDI 63

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           PAKI  D+   +++ A  A +AIG  G+SR DF
Sbjct: 64  PAKISDDVVAVMRKNAETAFRAIGGLGLSRCDF 96


>gi|83414039|dbj|BAE53810.1| D-alanine:D-alanine ligase [Streptococcus oralis]
 gi|83414055|dbj|BAE53818.1| D-alanine:D-alanine ligase [Streptococcus oralis]
 gi|83414077|dbj|BAE53829.1| D-alanine:D-alanine ligase [Streptococcus oralis]
 gi|83414079|dbj|BAE53830.1| D-alanine:D-alanine ligase [Streptococcus oralis]
 gi|193872906|gb|ACF23143.1| D-alanine-D-alanine ligase [Streptococcus oralis]
 gi|193872908|gb|ACF23144.1| D-alanine-D-alanine ligase [Streptococcus oralis]
 gi|193872938|gb|ACF23159.1| D-alanine-D-alanine ligase [Streptococcus oralis]
          Length = 96

 Score = 50.1 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 32/93 (34%), Positives = 52/93 (55%), Gaps = 4/93 (4%)

Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVL 215
           ++ +  ++L+EQ V+  E+  G++G+  +  T   E+ V    FY Y+ KY     T  +
Sbjct: 5   AFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDI 63

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           PAKI  D+   ++R A  A +AIG  G+SR DF
Sbjct: 64  PAKISDDVVAVMRRNAETAFRAIGGLGLSRCDF 96


>gi|37783473|gb|AAP41864.1| D-alanin-D-alanin ligase [Campylobacter jejuni]
          Length = 160

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 75/147 (51%), Gaps = 9/147 (6%)

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145
           ASALS +K  +K    S GV      ++ R   +S+  +S P +IKP + GSS+GI ++K
Sbjct: 7   ASALSFNKELTKLYAKSVGVKTLDYTIL-RKNQNSKEKLSFPCIIKPARLGSSIGISIVK 65

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDVTEIAVP-KSDFYSY 202
            ++   L+  +   +   + L++E++ + I+     G M +     + I  P K +F  +
Sbjct: 66  DEKD--LEYAKDVGFEFDNDLVVEEFKNNIKEYNLAGCMINDEFVFSIIEEPKKKEFLDF 123

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           E KY S +  + L   I  D+ +E++ 
Sbjct: 124 EQKYLSFSGHNEL---IEADLSEELKE 147


>gi|193872994|gb|ACF23187.1| D-alanine-D-alanine ligase [Streptococcus mitis]
          Length = 96

 Score = 49.7 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 32/93 (34%), Positives = 52/93 (55%), Gaps = 4/93 (4%)

Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVL 215
           ++ +  ++L+EQ V+  E+  G++G+  +  T   E+ V    FY Y+ KY     T  +
Sbjct: 5   AFRYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDI 63

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           PAKI  D+   ++R A  A +AIG  G+SR DF
Sbjct: 64  PAKISDDVIAVMRRNAETAFRAIGGLGLSRCDF 96


>gi|13509015|emb|CAC35258.1| D-alanin-D-alanin ligase [Campylobacter jejuni]
          Length = 160

 Score = 49.7 bits (117), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 74/147 (50%), Gaps = 9/147 (6%)

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145
           AS LS +K  +K    S GV      ++ R   +S+  +S P +IKP + GSS+GI ++K
Sbjct: 7   ASVLSFNKELTKLYAKSVGVKTLDYTML-RKNQNSKEKLSFPCIIKPARLGSSIGISIVK 65

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDVTEIAVP-KSDFYSY 202
            ++   L+  +   +   + L++E++ + I+     G M +     + I  P K +F  +
Sbjct: 66  DEKD--LEYAKDVGFEFDNDLVVEEFKNNIKEYNLAGCMINDEFVFSIIEEPKKKEFLDF 123

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           E KY S +  + L   I  D+ KE++ 
Sbjct: 124 EQKYLSFSGHNEL---IEADLSKELKE 147


>gi|83415048|dbj|BAE53783.1| D-alanine:D-alanine ligase [Streptococcus infantis]
 gi|193872882|gb|ACF23131.1| D-alanine-D-alanine ligase [Streptococcus infantis]
 gi|193873020|gb|ACF23200.1| D-alanine-D-alanine ligase [Streptococcus infantis]
 gi|193873032|gb|ACF23206.1| D-alanine-D-alanine ligase [Streptococcus infantis ATCC 700779]
          Length = 96

 Score = 49.7 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 32/93 (34%), Positives = 52/93 (55%), Gaps = 4/93 (4%)

Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVL 215
           ++ +  ++L+EQ V+  E+  G++G+  +  T   E+ V    FY YE KY     T  +
Sbjct: 5   AFKYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVAFYDYEAKYIDNKITMDI 63

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           PAKI  D+   +++ A  A +AIG  G+SR DF
Sbjct: 64  PAKISDDVVAVMRKNAEAAFRAIGGLGLSRCDF 96


>gi|146095686|ref|XP_001467639.1| methylcrotonoyl-coa carboxylase biotinylated subunitprotein-like
           protein [Leishmania infantum JPCM5]
 gi|134072004|emb|CAM70704.1| methylcrotonoyl-coa carboxylase biotinylated subunitprotein-like
           protein [Leishmania infantum JPCM5]
 gi|322501642|emb|CBZ36724.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 687

 Score = 49.7 bits (117), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 46/233 (19%), Positives = 106/233 (45%), Gaps = 33/233 (14%)

Query: 49  LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSM--DKMRSKQVVSSCGVP 106
           + P   F   + +F  D + ++ +E +  P       ASA+S+   K  SK+++ + GVP
Sbjct: 89  IHPGYGFLSENADFA-DAVTRSGIEFIGPP-------ASAISLMGSKSESKRIMEAAGVP 140

Query: 107 VCPSILVNR----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSS 158
           V P          F  +  + +  P +IK + GG   G+ ++++ + +   L     +++
Sbjct: 141 VVPGYYGENQNVSFLAEEANKVGFPILIKAVSGGGGKGMKIVERPEDLAFMLESAKREAA 200

Query: 159 SWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFY-----SYELKYSSLNST 212
           ++   D++++E+YV     + C +  D           +  F+     S + +Y  +   
Sbjct: 201 NFFKDDRVILERYVKRPRHIECQIFFDKH--------GRGVFFFERDCSVQRRYQKVLEE 252

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
              P  + +++ + +  +A  A +A+G  G    +F+FD  +   +++E+N +
Sbjct: 253 APAP-HLSMEMRQRIGEVALQAAKAVGYVGAGTVEFIFDTSTGDFYFMEMNTR 304


>gi|83414049|dbj|BAE53815.1| D-alanine:D-alanine ligase [Streptococcus oralis]
 gi|83414051|dbj|BAE53816.1| D-alanine:D-alanine ligase [Streptococcus oralis]
 gi|83414057|dbj|BAE53819.1| D-alanine:D-alanine ligase [Streptococcus oralis]
 gi|83414059|dbj|BAE53820.1| D-alanine:D-alanine ligase [Streptococcus oralis]
 gi|83414065|dbj|BAE53823.1| D-alanine:D-alanine ligase [Streptococcus oralis]
 gi|83414095|dbj|BAE53838.1| D-alanine:D-alanine ligase [Streptococcus oralis]
 gi|83414097|dbj|BAE53839.1| D-alanine:D-alanine ligase [Streptococcus oralis]
 gi|193873058|gb|ACF23219.1| D-alanine-D-alanine ligase [Streptococcus oralis]
 gi|193873062|gb|ACF23221.1| D-alanine-D-alanine ligase [Streptococcus oralis]
 gi|193873064|gb|ACF23222.1| D-alanine-D-alanine ligase [Streptococcus oralis]
 gi|193873066|gb|ACF23223.1| D-alanine-D-alanine ligase [Streptococcus oralis]
          Length = 96

 Score = 49.7 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 32/93 (34%), Positives = 52/93 (55%), Gaps = 4/93 (4%)

Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVL 215
           ++ +  ++L+EQ V+  E+  G++G+  +  T   E+ V    FY Y+ KY     T  +
Sbjct: 5   AFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDI 63

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           PAKI  D+   ++R A  A +AIG  G+SR DF
Sbjct: 64  PAKISDDVVAIMRRNAETAFRAIGGLGLSRCDF 96


>gi|193873014|gb|ACF23197.1| D-alanine-D-alanine ligase [Streptococcus mitis]
          Length = 96

 Score = 49.7 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 31/93 (33%), Positives = 52/93 (55%), Gaps = 4/93 (4%)

Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVL 215
           ++ +  ++L+EQ V+  E+  G++G+  +  T   E+ V   DFY Y+ KY     T  +
Sbjct: 5   AFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVDFYDYDAKYIDNKITMDI 63

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           P KI  D+   +++ A  A +AIG  G+SR DF
Sbjct: 64  PTKISDDVVAVMRQNAETAFRAIGGLGLSRCDF 96


>gi|32477963|ref|NP_870957.1| D-alanine-D-alanine ligase [Rhodopirellula baltica SH 1]
 gi|32448520|emb|CAD78035.1| probable D-alanine-D-alanine ligase [Rhodopirellula baltica SH 1]
 gi|327539377|gb|EGF25995.1| D-alanine-D-alanine ligase [Rhodopirellula baltica WH47]
          Length = 341

 Score = 49.7 bits (117), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 60/265 (22%), Positives = 112/265 (42%), Gaps = 24/265 (9%)

Query: 46  LAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS 102
           L + +P++ + +L   +G    D  V + LEL++ PY+        LS DK  SK+++  
Sbjct: 64  LQNFQPNITYMLLEEFYGVVTYDFAVISYLELMQQPYSGCNPRGLMLSKDKALSKKLLMY 123

Query: 103 CGVPVCP-SILVNRFTMDSQHLISPPYVIKPLKGGSSLGII---VIKKDQSIPLDLLQSS 158
             +     ++  N   +     +  P  +K     +S GI    ++  D+++   +    
Sbjct: 124 HRIATPRFAVFPNGRAVRRPKKLEFPLFVKSTIEDASFGIAQASIVHNDEALAERVTFLH 183

Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVT-------------EIAVPKSDFYSYELK 205
               GD +++EQY++G EL  GVMG+  L VT             E A   +    ++ K
Sbjct: 184 EKTGGD-VIVEQYIEGRELYVGVMGNTRL-VTFPAWEMDFGKMPDESARIATSRVKWDRK 241

Query: 206 YSSLNSTHVLPAKIPLDI-YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           Y   +      A+   ++  K + +L    ++A+   G +R D        +V+ +E N 
Sbjct: 242 YQEKHDITCHAAEGLTEVQQKHIAKLCKRVYRALHMSGYARMDLRMTATG-EVYVIEANA 300

Query: 265 QPGMTPVSIFPEMAAYAGYSFRELL 289
            P +     F E A  AG  +  L+
Sbjct: 301 NPNIEYGEDFAESAEAAGIPYESLI 325


>gi|193873040|gb|ACF23210.1| D-alanine-D-alanine ligase [Streptococcus infantis]
          Length = 96

 Score = 49.7 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 32/93 (34%), Positives = 52/93 (55%), Gaps = 4/93 (4%)

Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVL 215
           ++ +  ++L+EQ V+  E+  G++G+  +  T   E+ V    FY YE KY     T  +
Sbjct: 5   AFKYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVAFYDYEAKYIDNKITMDI 63

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           PAKI  ++   ++R A  A +AIG  G+SR DF
Sbjct: 64  PAKISDNVVAVMRRNAEAAFRAIGGLGLSRCDF 96


>gi|83414125|dbj|BAE53853.1| D-alanine:D-alanine ligase [Streptococcus sanguinis]
 gi|83414135|dbj|BAE53858.1| D-alanine:D-alanine ligase [Streptococcus sanguinis]
          Length = 96

 Score = 49.3 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 31/93 (33%), Positives = 52/93 (55%), Gaps = 4/93 (4%)

Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVL 215
           ++ +  ++L+EQ V   E+  G++G+  +  T   E+ V    FY YE KY     T  +
Sbjct: 5   AFKYDSRVLVEQGVTAREIEVGLLGNVDVKSTLPGEV-VKDVAFYDYEAKYIDNKITMDI 63

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           PAKIP ++   +++ A  A +A+G  G+SR DF
Sbjct: 64  PAKIPEEVVSLMRQNAETAFRALGGLGLSRCDF 96


>gi|2231981|gb|AAB62172.1| vancomycin resistance protein C2 [Enterococcus casseliflavus]
          Length = 119

 Score = 49.3 bits (116), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 58/113 (51%), Gaps = 8/113 (7%)

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS------PPYVIKPLKGG 136
           G+ ASAL M+K    Q  ++ GV   P+IL+       Q + +       P   KP + G
Sbjct: 2   GVAASALCMNKWLLHQAAATIGVQSAPTILLTNQDNQQQQIEAFIQTHGFPVFFKPNEAG 61

Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           SS GI  +   + I   L +  ++ +   +L+++ + G+E+ CG++G+ SL V
Sbjct: 62  SSKGITKVTCVEEIAPALKE--AFAYCSAVLLQKNIAGVEIGCGILGNDSLTV 112


>gi|213864771|ref|ZP_03386890.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Typhi str. M223]
          Length = 82

 Score = 49.3 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 3/80 (3%)

Query: 176 ELTCGVMGDASLDVTEIA--VPKSDFYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAF 232
           E+ C V+G+ +   +     V  SDFY+Y+ KY   +   V+ PA I  +I  +++ +A 
Sbjct: 2   EIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAV 61

Query: 233 LAHQAIGCRGISRSDFLFDP 252
            A+Q +GC G++R D    P
Sbjct: 62  QAYQTLGCAGMARVDVFLTP 81


>gi|157873596|ref|XP_001685305.1| methylcrotonoyl-coa carboxylase biotinylated subunitprotein-like
           protein [Leishmania major]
 gi|68128376|emb|CAJ08598.1| methylcrotonoyl-coa carboxylase biotinylated subunitprotein-like
           protein [Leishmania major strain Friedlin]
          Length = 687

 Score = 49.3 bits (116), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 44/207 (21%), Positives = 95/207 (45%), Gaps = 30/207 (14%)

Query: 80  THSGIL-----ASALSM--DKMRSKQVVSSCGVPVCPSILVNR----FTMDSQHLISPPY 128
           T SGI      ASA+S+   K  SK+++ + GVPV P          F  +  + +  P 
Sbjct: 107 TRSGIEFIGPPASAISLMGSKSESKRIMEAAGVPVVPGYYGENQNVSFLAEEANRVGFPI 166

Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGDQLLIEQYVDG-IELTCGVMG 183
           +IK + GG   G+ ++++ +     L     +++++   D++++E+YV     + C +  
Sbjct: 167 LIKAVSGGGGKGMKIVERPEDFAFMLESAKREAANFFKDDRVILERYVKRPRHIECQIFF 226

Query: 184 DASLDVTEIAVPKSDFY-----SYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           D           +  F+     S + +Y  +      P  + +++ + +  +A  A +A+
Sbjct: 227 DKH--------GRGVFFFERDCSVQRRYQKVLEEAPAP-HLSMEMRQRIGEVALQAAKAV 277

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQ 265
           G  G    +F+FD  +   +++E+N +
Sbjct: 278 GYVGAGTVEFIFDTSTGDFYFMEMNTR 304


>gi|83414145|dbj|BAE53863.1| D-alanine:D-alanine ligase [Streptococcus gordonii]
 gi|83414151|dbj|BAE53866.1| D-alanine:D-alanine ligase [Streptococcus gordonii]
          Length = 96

 Score = 49.3 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 29/93 (31%), Positives = 53/93 (56%), Gaps = 4/93 (4%)

Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVL 215
           ++ +  ++L+EQ V   E+  G++G+A +  +   E+ V    FY Y+ KY     T  +
Sbjct: 5   AFKYDSRVLVEQGVTAREIEVGLLGNADVKSSLPGEV-VKDVAFYDYQAKYIDNKITMAI 63

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           PA++P  +   +++ A +A +AIG  G+SR DF
Sbjct: 64  PAQLPEGVVNTMRQNAEIAFRAIGGLGLSRCDF 96


>gi|83414191|dbj|BAE53886.1| D-alanine:D-alanine ligase [Streptococcus anginosus]
 gi|83414195|dbj|BAE53888.1| D-alanine:D-alanine ligase [Streptococcus anginosus]
          Length = 96

 Score = 49.3 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 31/92 (33%), Positives = 49/92 (53%), Gaps = 2/92 (2%)

Query: 159 SWNHGDQLLIEQYVDGIELTCGVMG--DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216
           ++ +  ++LIEQ V+  E+  G++G  +A   +    V    FY YE KY     T  +P
Sbjct: 5   AFKYDSRVLIEQGVNAREIEVGLLGNEEAQSSLPGEVVKDVAFYDYEAKYIDNKITMDIP 64

Query: 217 AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           AK+  D+   +++ A  A  AIG  G+SR DF
Sbjct: 65  AKLSEDVIATMRQYAEKAFHAIGGVGLSRCDF 96


>gi|83414181|dbj|BAE53881.1| D-alanine:D-alanine ligase [Streptococcus anginosus]
          Length = 96

 Score = 49.3 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 31/92 (33%), Positives = 49/92 (53%), Gaps = 2/92 (2%)

Query: 159 SWNHGDQLLIEQYVDGIELTCGVMG--DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216
           ++ +  ++LIEQ V+  E+  G++G  +A   +    V    FY YE KY     T  +P
Sbjct: 5   AFKYDSRVLIEQGVNAREIEVGLLGNKEAQSSLPGEVVKDVAFYDYEAKYIDNKITMDIP 64

Query: 217 AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           AK+  D+   +++ A  A  AIG  G+SR DF
Sbjct: 65  AKLSEDVIATMRQYAEKAFHAIGGVGLSRCDF 96


>gi|83414177|dbj|BAE53879.1| D-alanine:D-alanine ligase [Streptococcus anginosus]
          Length = 96

 Score = 49.3 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 31/92 (33%), Positives = 49/92 (53%), Gaps = 2/92 (2%)

Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGD--ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216
           ++ +  ++LIEQ V+  E+  G++G+  A   +    V    FY YE KY     T  +P
Sbjct: 5   AFKYDSRVLIEQGVNAREIEVGLLGNKGAKSSLPGEVVKDVAFYDYEAKYIDNKITMDIP 64

Query: 217 AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           AK+  D+   +++ A  A  AIG  G+SR DF
Sbjct: 65  AKLSEDVIATMRQYAEKAFHAIGGVGLSRCDF 96


>gi|256829553|ref|YP_003158281.1| hypothetical protein Dbac_1774 [Desulfomicrobium baculatum DSM
           4028]
 gi|256578729|gb|ACU89865.1| protein of unknown function DUF201 [Desulfomicrobium baculatum DSM
           4028]
          Length = 340

 Score = 49.3 bits (116), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 52/249 (20%), Positives = 107/249 (42%), Gaps = 29/249 (11%)

Query: 46  LAHLKPDLAFNVL---HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS 102
           LAH +P++ FN++   HG      L  A+      P+T +   + AL+ DK  +++++ +
Sbjct: 58  LAHRRPNVIFNLVESCHGLASLACLAPALFRKAGFPFTGADEGSMALAGDKALARRLLHA 117

Query: 103 CGVPVCPSILVNRFTMDSQHLISP---PYVIKPLKGGSSLGI----IVIKKDQSIPLDLL 155
            G+PV P + +       Q  + P    Y+IK     +SLG+    +V  ++ +  L  +
Sbjct: 118 AGLPVPPGVTMGEL----QRGVFPGPGTYIIKARFEDASLGLGPDCVVDVREGAELLAAM 173

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI---------AVPKSDFYSYELKY 206
           +  +   G   + E YV G E    ++ +    V ++         A+P      Y  K+
Sbjct: 174 REFAPRMGGDCVAEGYVRGREFNLALLAEPGGGVRDLPLAEMVFDSAMPGPAILHYAAKW 233

Query: 207 SSLNSTHVLPAKI-----PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
              ++ +    +        D+  E++R+     +     G +R DF       +++ ++
Sbjct: 234 DQGSADYAASVRSFDLDGEEDLVLEMKRIGRACWELFNLAGYARIDFRVAGPG-QIYVID 292

Query: 262 INVQPGMTP 270
           +N  P +TP
Sbjct: 293 VNPNPCITP 301


>gi|108762853|ref|YP_634088.1| D-ala D-ala ligase domain-containing protein [Myxococcus xanthus DK
           1622]
 gi|108466733|gb|ABF91918.1| D-ala D-ala ligase domain protein [Myxococcus xanthus DK 1622]
          Length = 376

 Score = 49.3 bits (116), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 64/298 (21%), Positives = 135/298 (45%), Gaps = 27/298 (9%)

Query: 15  SLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNV---LHGNFGEDGLVQAI 71
           +L+ G   A  L   G ++  +D        L   +PDL  N+   L  +   +  +  +
Sbjct: 53  ALNRGDTLAEPLAIEGDRLDFMDT-------LRRCQPDLVVNLCESLAADSRGEMAIPCL 105

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP-PYVI 130
           L++L + YT S  L+  L++ K ++K+V+++ GV   P  +V R   D+  +  P P ++
Sbjct: 106 LDVLGLAYTGSSALSLGLALHKPKAKEVLTARGVSTPPFHVVERLE-DALAVDLPWPLIV 164

Query: 131 KPLKGGSSLGII--VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD---A 185
           KP +  +S+G+    +  +++  +    +         L+EQ++ G E+   ++G+    
Sbjct: 165 KPAREDASMGVTSESVVHERAALVRACDAVLREFHQPALVEQFIPGREIYVPLLGNRPRQ 224

Query: 186 SLDVTEIAVPKS-----DFYSYELKYSSLNSTHVLPA----KIPLDIYKEVQRLAFLAHQ 236
           +L +TEI   ++     +  SY  K+ + ++ +        ++  ++     ++A  A  
Sbjct: 225 ALPLTEIVFGRTFEDRPNIVSYNAKWEAASAEYRDTTSGLCRLDANLESRCVQVALEAFA 284

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           A+ C+   R D    P     + ++IN    + P + F + A  AG  +  L   +VE
Sbjct: 285 ALDCQDYGRVDLRVSPEGVP-YVIDINPNCDLHPSAGFAKAALAAGMDYPALASRLVE 341


>gi|313192183|emb|CBX19951.1| D alanine-D alanine ligase [Clostridium perfringens]
          Length = 124

 Score = 49.3 bits (116), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 32/130 (24%), Positives = 67/130 (51%), Gaps = 6/130 (4%)

Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK 196
           SS+   +++  +++   +L++  ++   +++IE+Y+ G E+TC ++    L V  I  PK
Sbjct: 1   SSVATTLVESKEAVKDAVLEALKYDT--EVMIEEYIKGDEITCPIIEGKMLPVLAIK-PK 57

Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256
             F+    KY    +   +  K+  D++KEV+++A   ++ + C   +R D L       
Sbjct: 58  GKFFDIASKYEDGGADEFI-VKLNEDLHKEVEKMALETYKLLKCDVYARVDMLVK--DNI 114

Query: 257 VFWLEINVQP 266
            + LE+N  P
Sbjct: 115 PYVLEVNTLP 124


>gi|84501852|ref|ZP_01000010.1| acetyl/propionyl CoA carboxylase alpha subunit [Oceanicola
           batsensis HTCC2597]
 gi|84389847|gb|EAQ02481.1| acetyl/propionyl CoA carboxylase alpha subunit [Oceanicola
           batsensis HTCC2597]
          Length = 489

 Score = 49.3 bits (116), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 50/221 (22%), Positives = 97/221 (43%), Gaps = 16/221 (7%)

Query: 56  NVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
           + +H  +G   E+    A LE   + +      A  L  DK+R++  V   G PV PS +
Sbjct: 77  DAVHPGYGFLSENAGFVAALEEAGVTFVGPTSQAIDLMGDKVRARAFVEERGFPVAPSAI 136

Query: 113 VN---RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH---GD-Q 165
            +      +D    +  P +IKP  GG   G+ V+++D ++  ++  +        GD +
Sbjct: 137 EDDDPATFVDRARAVGYPLLIKPSAGGGGKGMRVVREDSALETEIETARREGERYFGDGR 196

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           L +E+Y++    +   VMGD   +V      +    S + ++  +      PA  P +  
Sbjct: 197 LFVERYIESPRHIEVQVMGDGQGNVVHFWEREC---SIQRRFQKIIEETPSPALSP-EQR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +E+   A    +A+  RG    +F++       ++LE+N +
Sbjct: 253 QEICETAAGIARAVKYRGAGTVEFIY-ARDGAFYFLEMNTR 292


>gi|83414127|dbj|BAE53854.1| D-alanine:D-alanine ligase [Streptococcus sanguinis SK36]
 gi|83414129|dbj|BAE53855.1| D-alanine:D-alanine ligase [Streptococcus sanguinis]
 gi|83414141|dbj|BAE53861.1| D-alanine:D-alanine ligase [Streptococcus sanguinis]
          Length = 96

 Score = 49.3 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 31/93 (33%), Positives = 52/93 (55%), Gaps = 4/93 (4%)

Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVL 215
           ++ +  ++L+EQ V   E+  G++G+  +  T   E+ V    FY YE KY     T  +
Sbjct: 5   AFKYDSRVLVEQGVTAREIEVGLLGNVDVKSTLPGEV-VKDVAFYDYEAKYIDNKITMDI 63

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           PAKIP ++   +++ A  A +A+G  G+SR DF
Sbjct: 64  PAKIPEEVVSLMRQNAEAAFRALGGLGLSRCDF 96


>gi|83414111|dbj|BAE53846.1| D-alanine:D-alanine ligase [Streptococcus oralis]
 gi|83414117|dbj|BAE53849.1| D-alanine:D-alanine ligase [Streptococcus oralis]
          Length = 96

 Score = 49.3 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 31/93 (33%), Positives = 52/93 (55%), Gaps = 4/93 (4%)

Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVL 215
           ++ +  ++L+EQ V+  E+  G++G+  +  T   E+ V    FY Y+ KY     T  +
Sbjct: 5   AFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMAI 63

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           PAKI  D+   +++ A  A +AIG  G+SR DF
Sbjct: 64  PAKISDDVVAVMRQNAETAFRAIGGLGLSRCDF 96


>gi|15430602|dbj|BAB64428.1| vancomycin resistance protein C-2 [Enterococcus casseliflavus]
          Length = 115

 Score = 49.3 bits (116), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 59/109 (54%), Gaps = 4/109 (3%)

Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186
           P   KP + GSS GI  +   + I   L ++  + +   +L+++ + G+E+ CG++G+ S
Sbjct: 9   PVFFKPNEAGSSKGITKVTCVEEIAPALKEA--FAYCSAVLLQKNIAGVEIGCGILGNDS 66

Query: 187 LDVTEI-AVPKSD-FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           L V    A+   D F+ YE KY  +++   +PA +P  I  +V+  A L
Sbjct: 67  LTVGACDAISLVDGFFDYEEKYQLISAKITVPAPLPETIETKVKEQAQL 115


>gi|83414205|dbj|BAE53893.1| D-alanine:D-alanine ligase [Streptococcus gallolyticus subsp.
           gallolyticus]
 gi|83415066|dbj|BAE53792.1| D-alanine:D-alanine ligase [Streptococcus gallolyticus subsp.
           gallolyticus]
          Length = 96

 Score = 49.3 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 32/90 (35%), Positives = 49/90 (54%), Gaps = 4/90 (4%)

Query: 162 HGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAK 218
           +  ++LIE  V+  E+  G++G+A +  T   E+ V    FY Y+ KY     T  +PA 
Sbjct: 8   YDSRILIETGVNAREIEVGILGNADVQTTLPGEV-VKDVAFYDYDAKYIDNKITMDIPAH 66

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           I   I +E++  A  A +AIG  G+SR DF
Sbjct: 67  IDSSIMEEMRGYATTAFRAIGGCGLSRCDF 96


>gi|193872936|gb|ACF23158.1| D-alanine-D-alanine ligase [Streptococcus oralis]
          Length = 96

 Score = 48.9 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 31/93 (33%), Positives = 52/93 (55%), Gaps = 4/93 (4%)

Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVL 215
           ++ +  ++L+EQ V+  E+  G++G+  +  T   E+ V    FY Y+ KY     T  +
Sbjct: 5   AFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDI 63

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           PA+I  D+   ++R A  A +AIG  G+SR DF
Sbjct: 64  PARISDDVVAVMRRNAETAFRAIGGLGLSRCDF 96


>gi|193873004|gb|ACF23192.1| D-alanine-D-alanine ligase [Streptococcus mitis]
          Length = 96

 Score = 48.9 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 31/92 (33%), Positives = 50/92 (54%), Gaps = 2/92 (2%)

Query: 159 SWNHGDQLLIEQYVDGIELTCGVMG--DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216
           ++ +  ++L+EQ V+  E+  G++G  DA   +    V    FY Y+ KY     T  +P
Sbjct: 5   AFQYDSRVLVEQGVNAREIEVGLLGNYDAKSTLPGEVVKDVAFYDYDAKYIDNKITMDIP 64

Query: 217 AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           AKI  D+   +++ A  A +AIG  G+SR DF
Sbjct: 65  AKISDDVVAVMRQNAETAFRAIGGLGLSRCDF 96


>gi|37783469|gb|AAP41862.1| D-alanin-D-alanin ligase [Campylobacter jejuni]
          Length = 160

 Score = 48.9 bits (115), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 74/147 (50%), Gaps = 9/147 (6%)

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145
           AS LS +K  +K    S GV      ++ R   +S+  +S P +IKP + GSS+GI ++K
Sbjct: 7   ASVLSFNKELTKLYAKSVGVKTLDYTML-RKNQNSKEKLSFPCIIKPARLGSSIGISIVK 65

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDVTEIAVP-KSDFYSY 202
            ++   L+  +   +   + L++E++ + I+     G M +     + I  P K +F  +
Sbjct: 66  DEKD--LEYAKDVGFEFDNDLVVEEFKNNIKEYNLAGCMINDEFAFSIIEEPKKKEFLDF 123

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           E KY S +  + L   I  D+ +E++ 
Sbjct: 124 EQKYLSFSGHNEL---IEADLSEELKE 147


>gi|83415054|dbj|BAE53786.1| D-alanine:D-alanine ligase [Streptococcus peroris]
          Length = 96

 Score = 48.9 bits (115), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 49/92 (53%), Gaps = 2/92 (2%)

Query: 159 SWNHGDQLLIEQYVDGIELTCGVMG--DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216
           ++ +  ++L+EQ V+  E+  G++G  D    +    V    FY YE KY     T  +P
Sbjct: 5   AFKYDSRVLVEQGVNAREIEVGLLGNYDVKSSLPGEVVKDVAFYDYEAKYIDNKITMDIP 64

Query: 217 AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           AK+  D+   +++ A  A +AIG  G+SR DF
Sbjct: 65  AKLSDDVIATMRKNAETAFRAIGGLGLSRCDF 96


>gi|15430596|dbj|BAB64425.1| vancomycin resistance protein C-2 [Enterococcus casseliflavus]
          Length = 115

 Score = 48.9 bits (115), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 58/109 (53%), Gaps = 4/109 (3%)

Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186
           P   KP + GSS GI  +   + I   L ++  + +   +L+++ + G+E+ CG++G+ S
Sbjct: 9   PVFFKPNEAGSSKGITKVTCVEEIAPALKEA--FAYCSAVLLQKNIAGVEIGCGILGNDS 66

Query: 187 LDVTEI-AVPKSD-FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           L V    A+   D F+ YE KY  +++   +PA +P  I   V+  A L
Sbjct: 67  LTVGACDAISLVDGFFDYEEKYQLISAKITVPAPLPETIETRVKEQAQL 115


>gi|193872864|gb|ACF23122.1| D-alanine-D-alanine ligase [Streptococcus mitis]
 gi|193872888|gb|ACF23134.1| D-alanine-D-alanine ligase [Streptococcus mitis]
          Length = 96

 Score = 48.9 bits (115), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 31/93 (33%), Positives = 53/93 (56%), Gaps = 4/93 (4%)

Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVL 215
           ++ +  ++L+EQ V+  E+  G++G+  +  T   E+ V    FY Y+ KY     T  +
Sbjct: 5   AFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDI 63

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           PAKI  D+   +++ A +A +AIG  G+SR DF
Sbjct: 64  PAKISDDVVAVMRQNAEIAFRAIGGLGLSRCDF 96


>gi|193872962|gb|ACF23171.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
          Length = 96

 Score = 48.9 bits (115), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 31/93 (33%), Positives = 53/93 (56%), Gaps = 4/93 (4%)

Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVL 215
           ++ +  ++L+EQ V+  E+  G++G+  +  T   E+ V    FY Y+ KY     T  +
Sbjct: 5   AFRYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDI 63

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           PAKI  D+   +++ A +A +AIG  G+SR DF
Sbjct: 64  PAKISDDVVAVMRQNAEIAFRAIGGLGLSRCDF 96


>gi|256419162|ref|YP_003119815.1| phosphoribosylglycinamide synthetase [Chitinophaga pinensis DSM
           2588]
 gi|256034070|gb|ACU57614.1| phosphoribosylglycinamide synthetase [Chitinophaga pinensis DSM
           2588]
          Length = 353

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 57/231 (24%), Positives = 102/231 (44%), Gaps = 40/231 (17%)

Query: 92  DKMRSKQVVSSCGVPVCPSILVNRFTM-DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150
           DK  + +++    +P+ P+IL+N+  + D Q   S P V KP++G  S G+ V+     +
Sbjct: 120 DKWTTNKLLQKNNLPIPPAILINKDNLHDYQLHFSFPAVAKPIRGRGSDGVQVVDTADGL 179

Query: 151 PLDLLQSSSWN-HGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYS-------- 201
              L +  + + +G  + +E+++ G E+T  VM      + +I   K +++S        
Sbjct: 180 HKVLKEMFAEDKYGTAVYVEKFLPGREVTITVMPPGKYMIRDICQEKINYWSLPPVERFN 239

Query: 202 -------YELKYSSLNSTHVL-------PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
                  Y    + +N++ VL       PA I L   K+ +  A L    +G +   R D
Sbjct: 240 HEDGVAPYNGTVAVVNNSKVLDDAQLQSPAIITL--CKQCESAAAL----VGAKAPVRID 293

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEM---------AAYAGYSFRELL 289
              D   R  F  ++N++P MT  S    M         A   G++F +LL
Sbjct: 294 CRQDEQGR-YFLFDLNMKPNMTGASRPHRMDQDSLSALAARKIGWTFADLL 343


>gi|83415044|dbj|BAE53781.1| D-alanine:D-alanine ligase [Streptococcus oralis]
 gi|193872926|gb|ACF23153.1| D-alanine-D-alanine ligase [Streptococcus oralis ATCC 35037]
 gi|193873034|gb|ACF23207.1| D-alanine-D-alanine ligase [Streptococcus infantis]
          Length = 96

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/93 (33%), Positives = 53/93 (56%), Gaps = 4/93 (4%)

Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVL 215
           ++ +  ++L+EQ V+  E+  G++G+  +  T   E+ V    FY Y+ KY     T  +
Sbjct: 5   AFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDI 63

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           PAKI  D+   +++ A +A +AIG  G+SR DF
Sbjct: 64  PAKISDDVVAVMRQNAEIAFRAIGGLGLSRCDF 96


>gi|83414175|dbj|BAE53878.1| D-alanine:D-alanine ligase [Streptococcus anginosus]
 gi|83414185|dbj|BAE53883.1| D-alanine:D-alanine ligase [Streptococcus anginosus]
 gi|83414189|dbj|BAE53885.1| D-alanine:D-alanine ligase [Streptococcus anginosus]
          Length = 96

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/93 (33%), Positives = 51/93 (54%), Gaps = 4/93 (4%)

Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVL 215
           ++ +  ++LIEQ V+  E+  G++G+  +  +   E+ V    FY YE KY     T  +
Sbjct: 5   AFKYDSRVLIEQGVNAREIEVGLLGNKGVKSSLPGEV-VKDVAFYDYEAKYIDNKITMDI 63

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           PAK+  D+   +++ A  A  AIG  G+SR DF
Sbjct: 64  PAKLSEDVIATMRQYAEKAFHAIGGVGLSRCDF 96


>gi|83414133|dbj|BAE53857.1| D-alanine:D-alanine ligase [Streptococcus sanguinis]
 gi|83414139|dbj|BAE53860.1| D-alanine:D-alanine ligase [Streptococcus sanguinis]
          Length = 96

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/93 (33%), Positives = 52/93 (55%), Gaps = 4/93 (4%)

Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVL 215
           ++ +  ++L+EQ V   E+  G++G+  +  T   E+ V    FY YE KY     T  +
Sbjct: 5   AFKYDSRVLVEQGVTAREIEVGLLGNVDVKSTLPGEV-VKDVAFYDYEAKYIDNKITMDI 63

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           PAKIP ++   +++ A  A +A+G  G+SR DF
Sbjct: 64  PAKIPDEVVSLMRQNAEAAFRALGGLGLSRCDF 96


>gi|83415078|dbj|BAE53798.1| D-alanine:D-alanine ligase [Streptococcus mitis]
 gi|193873070|gb|ACF23225.1| D-alanine-D-alanine ligase [Streptococcus mitis]
          Length = 96

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/93 (33%), Positives = 53/93 (56%), Gaps = 4/93 (4%)

Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVL 215
           ++ +  ++L+EQ V+  E+  G++G+ ++  T   E+ V    FY Y+ KY     T  +
Sbjct: 5   AFQYDSRILVEQGVNAREIEVGLLGNYNVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDI 63

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           PAKI  D+   +++ A  A +AIG  G+SR DF
Sbjct: 64  PAKISDDVVAVMRQNAETAFRAIGGLGLSRCDF 96


>gi|83415074|dbj|BAE53796.1| D-alanine:D-alanine ligase [Streptococcus mitis]
          Length = 96

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/93 (34%), Positives = 52/93 (55%), Gaps = 4/93 (4%)

Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVL 215
           ++ +  ++L+EQ V+  E+  G++G+  +  T   E+ V   DFY Y+ KY     T  +
Sbjct: 5   AFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVDFYDYDAKYIDNKITMDI 63

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           PAKI  D    +++ A  A +AIG  G+SR DF
Sbjct: 64  PAKISDDEVAVMRQNAETAFRAIGGLGLSRCDF 96


>gi|193872988|gb|ACF23184.1| D-alanine-D-alanine ligase [Streptococcus mitis]
          Length = 96

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/93 (33%), Positives = 52/93 (55%), Gaps = 4/93 (4%)

Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVL 215
           ++ +  ++L+EQ V+  E+  G++G+  +  T   E+ V    FY Y+ KY     T  +
Sbjct: 5   AFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDI 63

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           PAKI  D+   +++ A  A +AIG  G+SR DF
Sbjct: 64  PAKISDDVIAVMRQYAETAFRAIGGLGLSRCDF 96


>gi|2231977|gb|AAB62170.1| vancomycin resistance protein C2 [Enterococcus casseliflavus]
          Length = 117

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/114 (28%), Positives = 56/114 (49%), Gaps = 10/114 (8%)

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP-------PYVIKPLKG 135
           G+  SAL M+K    Q  ++ GV   P+IL+     + Q  I         P   KP + 
Sbjct: 2   GVAGSALCMNKWLLHQAAAAIGVQSAPTILLTN-QANQQEQIEAFIQTHGFPVFFKPNEA 60

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           GSS GI  +   + I   L    ++ +   +L+++ + G+E+ CG++G+ SL V
Sbjct: 61  GSSKGITKVTCVEEIASAL--KKAFTYCSAVLLQKNIAGVEIGCGILGNDSLTV 112


>gi|2231979|gb|AAB62171.1| vancomycin resistance protein C2 [Enterococcus casseliflavus]
          Length = 120

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/114 (28%), Positives = 57/114 (50%), Gaps = 10/114 (8%)

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP-------PYVIKPLKG 135
           G+  SAL M+K    Q  ++ GV   P+IL+     + Q  I         P   KP + 
Sbjct: 2   GVAGSALCMNKWLLHQAAAAIGVQSAPTILLTN-QANQQEQIEAFIQTHGFPVFFKPNEA 60

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           GSS GI  +   + I   L ++  + +   +L+++ + G+E+ CG++G+ SL V
Sbjct: 61  GSSKGITKVTCVEEIASALKEA--FTYCSAVLLQKNIAGVEIGCGILGNDSLTV 112


>gi|193873024|gb|ACF23202.1| D-alanine-D-alanine ligase [Streptococcus mitis]
          Length = 96

 Score = 48.5 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/93 (33%), Positives = 52/93 (55%), Gaps = 4/93 (4%)

Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVL 215
           ++ +  ++L+EQ V+  E+  G++G+  +  T   E+ V    FY Y+ KY     T  +
Sbjct: 5   AFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDI 63

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           PAKI  D+   ++R +  A +AIG  G+SR DF
Sbjct: 64  PAKISDDVVAVMRRNSETAFRAIGGLGLSRCDF 96


>gi|2231983|gb|AAB62173.1| vancomycin resistance protein C2 [Enterococcus casseliflavus]
          Length = 122

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/114 (28%), Positives = 57/114 (50%), Gaps = 10/114 (8%)

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP-------PYVIKPLKG 135
           G+  SAL M+K    Q  ++ GV   P+IL+     + Q  I         P   KP + 
Sbjct: 2   GVAGSALCMNKWLLHQAAAAIGVQSAPTILLTN-QANQQEQIEAFIQTHGFPVFFKPNEA 60

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           GSS GI  +   + I   L ++  + +   +L+++ + G+E+ CG++G+ SL V
Sbjct: 61  GSSKGITKVTCVEEIASALKEA--FTYCSAVLLQKNIAGVEIGCGILGNDSLTV 112


>gi|182413979|ref|YP_001819045.1| D-alanine--D-alanine ligase domain-containing protein [Opitutus
           terrae PB90-1]
 gi|177841193|gb|ACB75445.1| D-alanine--D-alanine ligase domain protein [Opitutus terrae PB90-1]
          Length = 339

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 57/263 (21%), Positives = 111/263 (42%), Gaps = 26/263 (9%)

Query: 49  LKPDLAFNV---LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS--SC 103
            +PD+ FN+      N   D  + + L + +IP+T  G     L   K  SK+++S    
Sbjct: 68  FQPDVVFNLADQFRNNRAFDQHIVSFLAMSDIPFTGCGSTGLTLCKHKGVSKKILSYHRI 127

Query: 104 GVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGII---VIKKDQSIPLDLLQSSSW 160
             P    I   R  +  + L   P ++KPLK  +S GI     ++ D+    + ++    
Sbjct: 128 HTPAFAIIPRGRRAVRPKRL-KFPILVKPLKEEASYGIAQASFVETDEQF-RERVEFVHQ 185

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDV--------TEIAVPKSDFYSYELKY-SSLNS 211
              +  + E+Y++G EL   ++G+  L V         E+   +    +Y+ K+  +  +
Sbjct: 186 KFNNDAIAEEYIEGRELYVSLLGNHRLQVFPIRELVFREVPPDEPKIATYKAKWDEAYRA 245

Query: 212 THVLPAKIPLD----IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW-LEINVQP 266
              L  +   D    + ++++      ++ +   G +R D   +  +R   W +E N  P
Sbjct: 246 RWGLENRFVEDLEPALVRKIEATCRRIYRLLTIDGYARLDLRLN--ARNELWFIEANANP 303

Query: 267 GMTPVSIFPEMAAYAGYSFRELL 289
            + P   F   A  AG S+ +L+
Sbjct: 304 ILAPDEDFALSAGKAGLSYPQLI 326


>gi|83414203|dbj|BAE53892.1| D-alanine:D-alanine ligase [Streptococcus constellatus]
          Length = 96

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 50/92 (54%), Gaps = 2/92 (2%)

Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGD--ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216
           ++ +  ++LIEQ V+  E+  G++G+  A   +    V    FY YE KY     T  +P
Sbjct: 5   AFKYDSRVLIEQGVNAREIEVGLLGNEEAQSSLPGEVVKDVPFYDYEAKYIDNKITMSIP 64

Query: 217 AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           AK+  D+   +++ A  A +AIG  G++R DF
Sbjct: 65  AKLSDDVISTMRQHAEKAFRAIGGVGLARCDF 96


>gi|262199309|ref|YP_003270518.1| ATP-dependent carboxylate-amine ligase domain protein ATP-grasp
           [Haliangium ochraceum DSM 14365]
 gi|262082656|gb|ACY18625.1| ATP-dependent carboxylate-amine ligase domain protein ATP-grasp
           [Haliangium ochraceum DSM 14365]
          Length = 410

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 50/88 (56%), Gaps = 6/88 (6%)

Query: 92  DKMRSKQVVSSCGVPV--CPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS 149
           DK+  K+++ S GVPV  C S       +  +     PYV+KP +GG S+G+ VI+  Q 
Sbjct: 112 DKLIMKRLLRSAGVPVAACASAETPFDILAFEDSYGYPYVVKPRRGGGSVGVHVIRTRQQ 171

Query: 150 IPLDLLQ---SSSWNHGDQLLIEQYVDG 174
           +  +LL+   S S+     L++EQY++G
Sbjct: 172 LQ-ELLEGGLSHSFESDSDLMLEQYIEG 198


>gi|83414201|dbj|BAE53891.1| D-alanine:D-alanine ligase [Streptococcus constellatus]
          Length = 96

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 50/92 (54%), Gaps = 2/92 (2%)

Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGD--ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216
           ++ +  ++LIEQ V+  E+  G++G+  A   +    V    FY YE KY     T  +P
Sbjct: 5   AFKYDSRVLIEQGVNAREIEVGLLGNEEAQSSLPGEVVKDVAFYDYEAKYIDNKITMSIP 64

Query: 217 AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           AK+  D+   +++ A  A +AIG  G++R DF
Sbjct: 65  AKLSDDVISTMRQHAEKAFRAIGGVGLARCDF 96


>gi|83415040|dbj|BAE53779.1| D-alanine:D-alanine ligase [Streptococcus sanguinis]
          Length = 96

 Score = 48.5 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/93 (33%), Positives = 52/93 (55%), Gaps = 4/93 (4%)

Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVL 215
           ++ +  ++L+EQ V   E+  G++G+  +  T   E+ V    FY YE KY     T  +
Sbjct: 5   AFKYDSRVLVEQGVTAREIEVGLLGNVDVKSTLPGEV-VKDVAFYDYEPKYIDNKITMDI 63

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           PAKIP ++   +++ A  A +A+G  G+SR DF
Sbjct: 64  PAKIPEEVVSLMRQNAEAAFRALGGLGLSRCDF 96


>gi|193873038|gb|ACF23209.1| D-alanine-D-alanine ligase [Streptococcus mitis]
          Length = 96

 Score = 48.5 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/93 (34%), Positives = 52/93 (55%), Gaps = 4/93 (4%)

Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVL 215
           ++ +  ++LIEQ V+  E+  G++G+  +  T   E+ V    FY Y+ KY     T  +
Sbjct: 5   AFRYDSRVLIEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDI 63

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           PAKI  D+   +++ A  A +AIG  G+SR DF
Sbjct: 64  PAKISDDVVAVMRQNAETAFRAIGGLGLSRCDF 96


>gi|83414147|dbj|BAE53864.1| D-alanine:D-alanine ligase [Streptococcus gordonii]
 gi|83414149|dbj|BAE53865.1| D-alanine:D-alanine ligase [Streptococcus gordonii]
 gi|83414153|dbj|BAE53867.1| D-alanine:D-alanine ligase [Streptococcus gordonii]
 gi|83414155|dbj|BAE53868.1| D-alanine:D-alanine ligase [Streptococcus gordonii]
 gi|83414157|dbj|BAE53869.1| D-alanine:D-alanine ligase [Streptococcus gordonii]
 gi|83414159|dbj|BAE53870.1| D-alanine:D-alanine ligase [Streptococcus gordonii]
          Length = 96

 Score = 48.5 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/93 (31%), Positives = 52/93 (55%), Gaps = 4/93 (4%)

Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVL 215
           ++ +  ++L+EQ V   E+  G++G+A +  +   E+ V    FY Y+ KY     T  +
Sbjct: 5   AFKYDSRVLVEQGVTAREIEVGLLGNADVKSSLPGEV-VKDVAFYDYQAKYIDNKITMAI 63

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           PA++P  +   +++ A  A +AIG  G+SR DF
Sbjct: 64  PAQLPEGVVNTMRQNAETAFRAIGGLGLSRCDF 96


>gi|193873018|gb|ACF23199.1| D-alanine-D-alanine ligase [Streptococcus infantis]
          Length = 96

 Score = 48.5 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/93 (33%), Positives = 52/93 (55%), Gaps = 4/93 (4%)

Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVL 215
           ++ +  ++L+EQ V+  E+  G++G+  +  T   E+ V    FY Y+ KY     T  +
Sbjct: 5   AFKYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDI 63

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           PAKI  D+   +++ A  A +AIG  G+SR DF
Sbjct: 64  PAKISDDVVAVMRKNAETAFRAIGGLGLSRCDF 96


>gi|13509011|emb|CAC35256.1| D-alanin-D-alanin ligase [Campylobacter jejuni]
 gi|13509027|emb|CAC35264.1| D-alanin-D-alanin ligase [Campylobacter jejuni]
 gi|37783475|gb|AAP41865.1| D-alanin-D-alanin ligase [Campylobacter jejuni]
          Length = 160

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 67/133 (50%), Gaps = 6/133 (4%)

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145
           AS LS +K  +K    S GV      +V R   +S+  +S P +IKP + GSS+GI ++K
Sbjct: 7   ASVLSFNKELTKLYAKSVGVKTLDYTMV-RKGQNSKEKLSFPCIIKPARLGSSIGISIVK 65

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDVTEIAVP-KSDFYSY 202
            ++   L+  +   +   + L++E++ + I+     G M +     + I  P K +F  +
Sbjct: 66  DEKD--LEYAKDVGFEFDNDLVVEEFKNNIKEYNLAGCMINDEFVFSIIEEPKKKEFLDF 123

Query: 203 ELKYSSLNSTHVL 215
           E KY S +  + L
Sbjct: 124 EQKYLSFSGHNEL 136


>gi|193872954|gb|ACF23167.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|193872956|gb|ACF23168.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|193872968|gb|ACF23174.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
          Length = 96

 Score = 48.1 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/93 (33%), Positives = 52/93 (55%), Gaps = 4/93 (4%)

Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVL 215
           ++ +  ++L+EQ V+  E+  G++G+  +  T   E+ V    FY Y+ KY     T  +
Sbjct: 5   AFRYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKVTMDI 63

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           PAKI  D+   +++ A  A +AIG  G+SR DF
Sbjct: 64  PAKISDDVVAVMRQNAETAFRAIGGLGLSRCDF 96


>gi|83414119|dbj|BAE53850.1| D-alanine:D-alanine ligase [Streptococcus oralis]
 gi|193872982|gb|ACF23181.1| D-alanine-D-alanine ligase [Streptococcus mitis]
 gi|193872984|gb|ACF23182.1| D-alanine-D-alanine ligase [Streptococcus mitis]
 gi|193872986|gb|ACF23183.1| D-alanine-D-alanine ligase [Streptococcus mitis]
          Length = 96

 Score = 48.1 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/93 (33%), Positives = 52/93 (55%), Gaps = 4/93 (4%)

Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVL 215
           ++ +  ++L+EQ V+  E+  G++G+  +  T   E+ V    FY Y+ KY     T  +
Sbjct: 5   AFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDI 63

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           PAKI  D+   +++ A  A +AIG  G+SR DF
Sbjct: 64  PAKISNDVVAVMRQNAETAFRAIGGLGLSRCDF 96


>gi|193872858|gb|ACF23119.1| D-alanine-D-alanine ligase [Streptococcus mitis]
          Length = 96

 Score = 48.1 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/93 (33%), Positives = 52/93 (55%), Gaps = 4/93 (4%)

Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVL 215
           ++ +  ++L+EQ V+  E+  G++G+  +  T   E+ V    FY Y+ KY     T  +
Sbjct: 5   AFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDI 63

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           PAKI  D+   +++ A  A +AIG  G+SR DF
Sbjct: 64  PAKISNDVIAVMRQNAETAFRAIGGLGLSRCDF 96


>gi|13509023|emb|CAC35262.1| D-alanin-D-alanin ligase [Campylobacter jejuni]
          Length = 160

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 74/147 (50%), Gaps = 9/147 (6%)

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145
           AS LS +K  +K    S GV      ++ R   +S+  +S P +IKP + GSS+GI ++K
Sbjct: 7   ASVLSFNKELTKLYAKSVGVKTLDYTML-RKNQNSKEKLSFPCIIKPARLGSSIGISIVK 65

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDVTEIAVP-KSDFYSY 202
            ++   L+  +   +   + L++E++ + I+     G M +     + I  P K +F  +
Sbjct: 66  DEKD--LEYAKDVGFEFDNDLVVEEFKNNIKEYNLAGCMINDEFVFSIIEEPKKKEFLDF 123

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           E KY S +  + L   I  D+ +E++ 
Sbjct: 124 EQKYLSFSGHNEL---IEADLSEELKE 147


>gi|193873052|gb|ACF23216.1| D-alanine-D-alanine ligase [Streptococcus infantis]
 gi|193873054|gb|ACF23217.1| D-alanine-D-alanine ligase [Streptococcus infantis]
          Length = 96

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/93 (33%), Positives = 52/93 (55%), Gaps = 4/93 (4%)

Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVL 215
           ++ +  ++L+EQ V+  E+  G++G+  +  T   E+ V    FY Y+ KY     T  +
Sbjct: 5   AFKYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDI 63

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           PAKI  D+   +++ A  A +AIG  G+SR DF
Sbjct: 64  PAKISDDVIALMRKNAETAFRAIGGLGLSRCDF 96


>gi|193873036|gb|ACF23208.1| D-alanine-D-alanine ligase [Streptococcus infantis]
          Length = 96

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/93 (33%), Positives = 52/93 (55%), Gaps = 4/93 (4%)

Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVL 215
           ++ +  ++L+EQ V+  E+  G++G+  +  T   E+ V    FY Y+ KY     T  +
Sbjct: 5   AFKYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDI 63

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           PAKI  D+   +++ A  A +AIG  G+SR DF
Sbjct: 64  PAKISDDVIALMRKNAETAFRAIGGLGLSRCDF 96


>gi|13509009|emb|CAC35255.1| D-alanin-D-alanin ligase [Campylobacter jejuni]
          Length = 160

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 74/147 (50%), Gaps = 9/147 (6%)

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145
           AS LS +K  +K    S GV      ++ R   +S+  +S P +IKP + GSS+GI ++K
Sbjct: 7   ASVLSFNKELTKLYAKSVGVKTLDYTIL-RKNQNSKEKLSFPCIIKPARLGSSIGISIVK 65

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDVTEIAVP-KSDFYSY 202
            ++   L+  +   +   + L++E++ + I+     G M +     + I  P K +F  +
Sbjct: 66  DEKD--LEYAKDVGFEFDNDLVVEEFKNNIKEYNLAGCMINDEFVFSIIEEPKKKEFLDF 123

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           E KY S +  + L   I  D+ +E++ 
Sbjct: 124 EQKYLSFSGHNEL---IEADLSEELKE 147


>gi|193872860|gb|ACF23120.1| D-alanine-D-alanine ligase [Streptococcus mitis]
          Length = 96

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/93 (33%), Positives = 52/93 (55%), Gaps = 4/93 (4%)

Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVL 215
           ++ +  ++L+EQ V+  E+  G++G+  +  T   E+ V    FY Y+ KY     T  +
Sbjct: 5   AFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDI 63

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           PAKI  D+   +++ A  A +AIG  G+SR DF
Sbjct: 64  PAKISDDVVAVMRQNAETAFRAIGGLGLSRCDF 96


>gi|15430586|dbj|BAB64420.1| vancomycin resistance protein C-2 [Enterococcus casseliflavus]
 gi|15430588|dbj|BAB64421.1| vancomycin resistance protein C-2 [Enterococcus casseliflavus]
 gi|15430594|dbj|BAB64424.1| vancomycin resistance protein C-2 [Enterococcus casseliflavus]
 gi|15430604|dbj|BAB64429.1| vancomycin resistance protein C-2 [Enterococcus casseliflavus]
          Length = 115

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 59/109 (54%), Gaps = 4/109 (3%)

Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186
           P   KP + GSS GI  +   + I   L ++  + +   +L+++ + G+E+ CG++G+ S
Sbjct: 9   PVFFKPNEAGSSKGITKVTCVEEIAPALKEA--FAYCSAVLLQKNIAGVEIGCGILGNDS 66

Query: 187 LDVTEI-AVPKSD-FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           L V    A+   D F+ +E KY  +++   +PA +P  I  +V+  A L
Sbjct: 67  LTVGACDAISLVDGFFDFEEKYQLISAKITVPAPLPETIETKVKEQAQL 115


>gi|193872958|gb|ACF23169.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|193872960|gb|ACF23170.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
          Length = 96

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/93 (33%), Positives = 52/93 (55%), Gaps = 4/93 (4%)

Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVL 215
           ++ +  ++L+EQ V+  E+  G++G+  +  T   E+ V    FY Y+ KY     T  +
Sbjct: 5   AFRYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDI 63

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           PAKI  D+   +++ A  A +AIG  G+SR DF
Sbjct: 64  PAKISDDVVAVMRQNAETAFRAIGGLGLSRCDF 96


>gi|193873002|gb|ACF23191.1| D-alanine-D-alanine ligase [Streptococcus mitis]
          Length = 96

 Score = 47.8 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/93 (33%), Positives = 52/93 (55%), Gaps = 4/93 (4%)

Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVL 215
           ++ +  ++L+EQ V+  E+  G++G+  +  T   E+ V    FY Y+ KY     T  +
Sbjct: 5   AFRYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDI 63

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           PAKI  D+   +++ A  A +AIG  G+SR DF
Sbjct: 64  PAKISDDVIAVMRQNAETAFRAIGGLGLSRCDF 96


>gi|83414031|dbj|BAE53806.1| D-alanine:D-alanine ligase [Streptococcus mitis]
 gi|83414035|dbj|BAE53808.1| D-alanine:D-alanine ligase [Streptococcus pseudopneumoniae]
 gi|83414083|dbj|BAE53832.1| D-alanine:D-alanine ligase [Streptococcus oralis]
 gi|83414087|dbj|BAE53834.1| D-alanine:D-alanine ligase [Streptococcus oralis]
 gi|83414089|dbj|BAE53835.1| D-alanine:D-alanine ligase [Streptococcus oralis]
 gi|83414091|dbj|BAE53836.1| D-alanine:D-alanine ligase [Streptococcus oralis]
 gi|83414105|dbj|BAE53843.1| D-alanine:D-alanine ligase [Streptococcus oralis]
 gi|83414113|dbj|BAE53847.1| D-alanine:D-alanine ligase [Streptococcus oralis]
 gi|83414115|dbj|BAE53848.1| D-alanine:D-alanine ligase [Streptococcus oralis]
 gi|83414121|dbj|BAE53851.1| D-alanine:D-alanine ligase [Streptococcus oralis]
 gi|83414123|dbj|BAE53852.1| D-alanine:D-alanine ligase [Streptococcus oralis]
 gi|83415046|dbj|BAE53782.1| D-alanine:D-alanine ligase [Streptococcus pseudopneumoniae]
 gi|193872878|gb|ACF23129.1| D-alanine-D-alanine ligase [Streptococcus mitis]
 gi|193872894|gb|ACF23137.1| D-alanine-D-alanine ligase [Streptococcus mitis]
 gi|193872910|gb|ACF23145.1| D-alanine-D-alanine ligase [Streptococcus oralis]
 gi|193872912|gb|ACF23146.1| D-alanine-D-alanine ligase [Streptococcus oralis]
 gi|193872970|gb|ACF23175.1| D-alanine-D-alanine ligase [Streptococcus sp. SK597]
 gi|193872972|gb|ACF23176.1| D-alanine-D-alanine ligase [Streptococcus mitis]
 gi|193873030|gb|ACF23205.1| D-alanine-D-alanine ligase [Streptococcus pseudopneumoniae]
 gi|193873048|gb|ACF23214.1| D-alanine-D-alanine ligase [Streptococcus pseudopneumoniae ATCC
           BAA-960]
 gi|193873050|gb|ACF23215.1| D-alanine-D-alanine ligase [Streptococcus pseudopneumoniae]
 gi|193873080|gb|ACF23230.1| D-alanine-D-alanine ligase [Streptococcus oralis]
 gi|193873082|gb|ACF23231.1| D-alanine-D-alanine ligase [Streptococcus oralis]
          Length = 96

 Score = 47.8 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/93 (33%), Positives = 52/93 (55%), Gaps = 4/93 (4%)

Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVL 215
           ++ +  ++L+EQ V+  E+  G++G+  +  T   E+ V    FY Y+ KY     T  +
Sbjct: 5   AFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDI 63

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           PAKI  D+   +++ A  A +AIG  G+SR DF
Sbjct: 64  PAKISDDVVAVMRQNAETAFRAIGGLGLSRCDF 96


>gi|83414033|dbj|BAE53807.1| D-alanine:D-alanine ligase [Streptococcus mitis]
 gi|83415042|dbj|BAE53780.1| D-alanine:D-alanine ligase [Streptococcus mitis]
 gi|83415070|dbj|BAE53794.1| D-alanine:D-alanine ligase [Streptococcus mitis]
 gi|83415072|dbj|BAE53795.1| D-alanine:D-alanine ligase [Streptococcus mitis]
 gi|83415080|dbj|BAE53799.1| D-alanine:D-alanine ligase [Streptococcus mitis]
 gi|83415082|dbj|BAE53800.1| D-alanine:D-alanine ligase [Streptococcus mitis]
 gi|193872854|gb|ACF23117.1| D-alanine-D-alanine ligase [Streptococcus mitis]
 gi|193872866|gb|ACF23123.1| D-alanine-D-alanine ligase [Streptococcus mitis]
 gi|193872872|gb|ACF23126.1| D-alanine-D-alanine ligase [Streptococcus mitis]
 gi|193872874|gb|ACF23127.1| D-alanine-D-alanine ligase [Streptococcus infantis]
 gi|193872880|gb|ACF23130.1| D-alanine-D-alanine ligase [Streptococcus mitis]
 gi|193872896|gb|ACF23138.1| D-alanine-D-alanine ligase [Streptococcus mitis]
 gi|193872898|gb|ACF23139.1| D-alanine-D-alanine ligase [Streptococcus mitis]
 gi|193872900|gb|ACF23140.1| D-alanine-D-alanine ligase [Streptococcus mitis]
 gi|193872976|gb|ACF23178.1| D-alanine-D-alanine ligase [Streptococcus mitis]
 gi|193872990|gb|ACF23185.1| D-alanine-D-alanine ligase [Streptococcus mitis]
 gi|193872992|gb|ACF23186.1| D-alanine-D-alanine ligase [Streptococcus mitis]
 gi|193872996|gb|ACF23188.1| D-alanine-D-alanine ligase [Streptococcus mitis]
 gi|193872998|gb|ACF23189.1| D-alanine-D-alanine ligase [Streptococcus mitis]
 gi|193873000|gb|ACF23190.1| D-alanine-D-alanine ligase [Streptococcus mitis]
 gi|193873006|gb|ACF23193.1| D-alanine-D-alanine ligase [Streptococcus mitis]
 gi|193873012|gb|ACF23196.1| D-alanine-D-alanine ligase [Streptococcus mitis]
 gi|193873022|gb|ACF23201.1| D-alanine-D-alanine ligase [Streptococcus mitis]
 gi|193873026|gb|ACF23203.1| D-alanine-D-alanine ligase [Streptococcus mitis]
 gi|193873072|gb|ACF23226.1| D-alanine-D-alanine ligase [Streptococcus mitis]
 gi|193873074|gb|ACF23227.1| D-alanine-D-alanine ligase [Streptococcus mitis]
 gi|193873078|gb|ACF23229.1| D-alanine-D-alanine ligase [Streptococcus mitis]
          Length = 96

 Score = 47.8 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/93 (33%), Positives = 52/93 (55%), Gaps = 4/93 (4%)

Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVL 215
           ++ +  ++L+EQ V+  E+  G++G+  +  T   E+ V    FY Y+ KY     T  +
Sbjct: 5   AFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDI 63

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           PAKI  D+   +++ A  A +AIG  G+SR DF
Sbjct: 64  PAKISDDVVAVMRQNAETAFRAIGGLGLSRCDF 96


>gi|332707489|ref|ZP_08427535.1| hypothetical protein LYNGBM3L_39910 [Lyngbya majuscula 3L]
 gi|332353747|gb|EGJ33241.1| hypothetical protein LYNGBM3L_39910 [Lyngbya majuscula 3L]
          Length = 135

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 27/74 (36%), Positives = 39/74 (52%), Gaps = 1/74 (1%)

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAG 282
           + K VQ +A   HQA+GCR  S  DF  DP  +  F LE  +    +P S+   MA  +G
Sbjct: 54  VTKPVQEVAKRCHQALGCRHYSLFDFRIDPQGQPWF-LEAGLYCSFSPKSVIASMAKASG 112

Query: 283 YSFRELLLWMVEDA 296
            S  ELL+  +++ 
Sbjct: 113 ISVNELLMIAIDET 126


>gi|213024194|ref|ZP_03338641.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Typhi str. 404ty]
          Length = 77

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 38/68 (55%), Gaps = 1/68 (1%)

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           +Q L   A +A+GC G  R D + D    + + LE N  PGMT  S+ P  A  AG SF 
Sbjct: 8   LQSLVLQAWKALGCTGWGRIDVMLDS-DGQFYLLEANTSPGMTSHSLVPMAARQAGMSFS 66

Query: 287 ELLLWMVE 294
           +L++ ++E
Sbjct: 67  QLVVRILE 74


>gi|193872890|gb|ACF23135.1| D-alanine-D-alanine ligase [Streptococcus mitis]
 gi|193872942|gb|ACF23161.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|193872944|gb|ACF23162.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|193872946|gb|ACF23163.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|193872948|gb|ACF23164.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|193872950|gb|ACF23165.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|193872952|gb|ACF23166.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|193872964|gb|ACF23172.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|193872966|gb|ACF23173.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|193873042|gb|ACF23211.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|193873044|gb|ACF23212.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|193873088|gb|ACF23234.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
          Length = 96

 Score = 47.8 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/93 (33%), Positives = 52/93 (55%), Gaps = 4/93 (4%)

Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVL 215
           ++ +  ++L+EQ V+  E+  G++G+  +  T   E+ V    FY Y+ KY     T  +
Sbjct: 5   AFRYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDI 63

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           PAKI  D+   +++ A  A +AIG  G+SR DF
Sbjct: 64  PAKISDDVVAVMRQNAETAFRAIGGLGLSRCDF 96


>gi|193872980|gb|ACF23180.1| D-alanine-D-alanine ligase [Streptococcus mitis]
 gi|193873008|gb|ACF23194.1| D-alanine-D-alanine ligase [Streptococcus mitis]
          Length = 96

 Score = 47.8 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/93 (33%), Positives = 52/93 (55%), Gaps = 4/93 (4%)

Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVL 215
           ++ +  ++L+EQ V+  E+  G++G+  +  T   E+ V    FY Y+ KY     T  +
Sbjct: 5   AFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDI 63

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           PAKI  D+   +++ A  A +AIG  G+SR DF
Sbjct: 64  PAKISDDVIAVMRQNAETAFRAIGGLGLSRCDF 96


>gi|50082939|gb|AAT70091.1| D-alanyl-D-alanine ligase [Rhodococcus sp. RE-S7B]
          Length = 126

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 64/120 (53%), Gaps = 10/120 (8%)

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD----ASLDVTEIAVP 195
           G+  + ++  +P  L  S++  +  ++LIE+ V G E+ C VMG+     + +V  + + 
Sbjct: 1   GVSKVTREDELPNAL--SAARQYDSKVLIEEAVAGSEIGCAVMGELFGLITGEVDRVDLS 58

Query: 196 KSDFYSYEL---KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD-FLFD 251
              F  ++    +  S NST ++PA I  +  + VQ  A   ++ +GC+G++R D FL D
Sbjct: 59  HGFFRIHQEDSPETGSENSTFIVPADISDESRRLVQETAKAIYRTLGCKGLARVDMFLTD 118


>gi|13509029|emb|CAC35265.1| D-alanin-D-alanin ligase [Campylobacter jejuni]
          Length = 160

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 67/133 (50%), Gaps = 6/133 (4%)

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145
           AS LS +K  +K    S GV      ++ R   +S+  +S P +IKP + GSS+GI ++K
Sbjct: 7   ASVLSFNKELTKLYAKSVGVKTLDYTML-RKNQNSKEKLSFPCIIKPARLGSSIGISIVK 65

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDVTEIAVP-KSDFYSY 202
            ++   L+  +   +   + L++E++ + I+     G M +     + I  P K +F  +
Sbjct: 66  DEKD--LEYAKDVGFEFDNDLVVEEFKNNIKEYNLAGCMINDEFVFSIIEEPKKKEFLDF 123

Query: 203 ELKYSSLNSTHVL 215
           E KY S +  + L
Sbjct: 124 EQKYLSFSGHNEL 136


>gi|83414045|dbj|BAE53813.1| D-alanine:D-alanine ligase [Streptococcus oralis]
          Length = 96

 Score = 47.8 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/93 (33%), Positives = 52/93 (55%), Gaps = 4/93 (4%)

Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVL 215
           ++ +  ++L+EQ V+  E+  G++G+  +  T   E+ V    FY Y+ KY     T  +
Sbjct: 5   AFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDI 63

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           PAKI  D+   +++ A  A +AIG  G+SR DF
Sbjct: 64  PAKISDDVVAVMRQNAETAFRAIGGLGLSRCDF 96


>gi|83414183|dbj|BAE53882.1| D-alanine:D-alanine ligase [Streptococcus anginosus]
 gi|83414187|dbj|BAE53884.1| D-alanine:D-alanine ligase [Streptococcus anginosus]
          Length = 96

 Score = 47.8 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/93 (32%), Positives = 51/93 (54%), Gaps = 4/93 (4%)

Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVL 215
           ++ +  ++LIEQ V+  E+  G++G+  +  +   E+ V    FY YE KY     T  +
Sbjct: 5   AFKYDSRVLIEQGVNAREIEVGLLGNKGVKSSLPGEV-VKDVAFYDYEAKYIDNKITMDI 63

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           PAK+  D+   +++ A  A  AIG  G++R DF
Sbjct: 64  PAKLSEDVIATMRQYAEKAFHAIGGVGLARCDF 96


>gi|187735236|ref|YP_001877348.1| hypothetical protein Amuc_0730 [Akkermansia muciniphila ATCC
           BAA-835]
 gi|187425288|gb|ACD04567.1| conserved hypothetical protein [Akkermansia muciniphila ATCC
           BAA-835]
          Length = 341

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 69/290 (23%), Positives = 124/290 (42%), Gaps = 37/290 (12%)

Query: 24  SALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYT 80
            A++D G+ V  +   +   +  A    D  F++++  F     +  + +  E +++PY 
Sbjct: 51  KAIQDIGYDV--VSSSKPYSVQFAKGNVDYVFSLMN-RFAMSRPEIFISSYCEFIQVPYL 107

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSI-LVNRFTMDSQHLISPPYVIKPLKGGSSL 139
            +     A++ DK  +K V  S  + V   I L     + +Q     PY +K   G +S 
Sbjct: 108 GAPPNIRAIAEDKFLTKMVFRSLELNVPEGIGLSGEKGIPAQAPFPGPYFVKKRFGAASG 167

Query: 140 GIIVIKKDQSIPLDLLQSSSWN-----------HGDQLLIEQYVDGIELTCGVMGDASLD 188
           GI    ++ SI       SSW             G ++L+EQY +GI++T  V+G  +  
Sbjct: 168 GI----REDSI------CSSWKAVGSCARRLMEEGHEVLVEQYCEGIDVTVPVLGGENPV 217

Query: 189 VTEIAVPKSD----FYSYELK-YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           +     PKSD      + +LK +  L    V    +  DI  +V+++      A+G    
Sbjct: 218 ILGYVQPKSDKPGSIITEDLKLHDHLGYQLVSVQDMEQDIASDVRKI----WSALGPMDY 273

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            R D+  D  + +   LE+N+   +         AA  GYS  +LL +++
Sbjct: 274 FRIDYRIDFETGERRILEMNICCHLGKSGSICLAAAEHGYSQADLLKYII 323


>gi|158521902|ref|YP_001529772.1| GCN5-related N-acetyltransferase [Desulfococcus oleovorans Hxd3]
 gi|158510728|gb|ABW67695.1| GCN5-related N-acetyltransferase [Desulfococcus oleovorans Hxd3]
          Length = 527

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 74/306 (24%), Positives = 124/306 (40%), Gaps = 41/306 (13%)

Query: 16  LSSGKACASALEDAGFKVSQIDVD---RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ--- 69
           LS  +A + AL D G++   +  D    ++   L  L PDL FN++    G+  L+    
Sbjct: 34  LSQVEAVSGALSDLGYEPVPLACDLDLEALRRDLVSLCPDLVFNLVESLNGQGRLIHLAP 93

Query: 70  AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-------ILVNRFTMD-SQ 121
            +LE + IPYT S       + +K  +K  +S  GV   PS       + + R  ++ ++
Sbjct: 94  ILLEAMGIPYTGSSAYVIYRTSNKTAAKDHMSQWGV-ATPSWIGPASLLRIQRTRVNPAE 152

Query: 122 HLISPPYVIKPLKGGSSLGI----IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            L +  ++IK +   +S G+    +V        L+ L+  S   G     E Y+ G E 
Sbjct: 153 RLPNQSWIIKSVWEHASFGLDENAVVCPDTLGDILNTLKQRSPALGGDCFAEHYIPGREF 212

Query: 178 TCGVMGDAS----LDVTEIAV-----PKSDFYSYELKY--------SSLNSTHVLPAKIP 220
              ++ +A     L V EI        K     Y  K+        +++ S     +  P
Sbjct: 213 NVALIEEAGKPRVLPVAEIRFENYEGEKPAIVCYRAKWEPGSFECLNTVRSFEFPDSDGP 272

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW-LEINVQPGMTPVSIFPEMAA 279
           L   + V  +A         +G +R DF  D       W LE+N  P ++P + F     
Sbjct: 273 L--LEGVTSIARHCWDLFHLKGYARVDFRVDDCGNP--WVLEVNANPCLSPDAGFAAAME 328

Query: 280 YAGYSF 285
            AG S+
Sbjct: 329 QAGISY 334


>gi|193872940|gb|ACF23160.1| D-alanine-D-alanine ligase [Streptococcus oralis]
 gi|193872974|gb|ACF23177.1| D-alanine-D-alanine ligase [Streptococcus mitis]
          Length = 96

 Score = 47.8 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/93 (33%), Positives = 52/93 (55%), Gaps = 4/93 (4%)

Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVL 215
           ++ +  ++L+EQ V+  E+  G++G+  +  T   E+ V    FY Y+ KY     T  +
Sbjct: 5   AFQYDSRVLVEQGVNAREIEIGLLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDI 63

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           PAKI  D+   +++ A  A +AIG  G+SR DF
Sbjct: 64  PAKISDDVVAVMRQNAETAFRAIGGLGLSRCDF 96


>gi|83414193|dbj|BAE53887.1| D-alanine:D-alanine ligase [Streptococcus anginosus]
          Length = 96

 Score = 47.8 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 48/92 (52%), Gaps = 2/92 (2%)

Query: 159 SWNHGDQLLIEQYVDGIELTCGVMG--DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216
           ++ +  ++LIEQ V+  E+  G++G  +A   +    V    FY YE KY     T  +P
Sbjct: 5   AFKYDSRVLIEQGVNAREIEVGLLGNEEAQSSLPGEVVKDVAFYDYEAKYIDNKITMDIP 64

Query: 217 AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           AK+  D+   +++ A  A  A G  G+SR DF
Sbjct: 65  AKLSEDVIATMRQYAEKAFHAFGGVGLSRCDF 96


>gi|193872868|gb|ACF23124.1| D-alanine-D-alanine ligase [Streptococcus mitis]
          Length = 96

 Score = 47.8 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 50/92 (54%), Gaps = 2/92 (2%)

Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA--VPKSDFYSYELKYSSLNSTHVLP 216
           ++ +  ++L+EQ V+  E+  G++G+  +  T     V    FY Y+ KY     T  +P
Sbjct: 5   AFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGRIVKDVAFYDYDAKYIDNKITMDIP 64

Query: 217 AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           AKI  D+   +++ A  A +AIG  G+SR DF
Sbjct: 65  AKISDDVVAVMRQNAETAFRAIGGLGLSRCDF 96


>gi|193873084|gb|ACF23232.1| D-alanine-D-alanine ligase [Streptococcus mitis]
          Length = 96

 Score = 47.8 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/92 (33%), Positives = 49/92 (53%), Gaps = 2/92 (2%)

Query: 159 SWNHGDQLLIEQYVDGIELTCGVMG--DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216
           ++ +  ++L+EQ V+  E+  G++G  D    +    V   DFY Y+ KY     T  +P
Sbjct: 5   AFQYDSRVLVEQGVNAREIEVGLLGNYDVKSALPGEVVKDVDFYDYDAKYIDNKITMDIP 64

Query: 217 AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           AKI  D    +++ A  A +AIG  G+SR DF
Sbjct: 65  AKISDDEVAVMRQNAETAFRAIGGLGLSRCDF 96


>gi|83414197|dbj|BAE53889.1| D-alanine:D-alanine ligase [Streptococcus intermedius]
          Length = 96

 Score = 47.8 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/92 (33%), Positives = 47/92 (51%), Gaps = 2/92 (2%)

Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGD--ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216
           ++ +  ++LIEQ V+  E+  G+ G+  A   +    V    FY YE KY     T  +P
Sbjct: 5   AFKYDSRVLIEQGVNAREIEVGLFGNERAKSSLPGEVVKDVAFYDYEAKYIDNKITMDIP 64

Query: 217 AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           AK+  D+   ++  A  A  AIG  G+SR DF
Sbjct: 65  AKLSEDVIATMRDYAEKAFHAIGGVGLSRCDF 96


>gi|300693172|ref|YP_003749145.1| hypothetical protein RPSI07_mp0137 [Ralstonia solanacearum PSI07]
 gi|299075209|emb|CBJ34496.1| conserved hypothethical protein [Ralstonia solanacearum PSI07]
          Length = 388

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 63/242 (26%), Positives = 104/242 (42%), Gaps = 44/242 (18%)

Query: 92  DKMRSKQVVSSCGVPVCPSILVNRFTMDS-------------QHLISPPYVIKPLKGGSS 138
           DK  +   +   G+PV  S LV R    S             +  ++ P V+KP++G  S
Sbjct: 139 DKYATNAHLRRHGLPVAASSLVGREACGSLPPLEALREDDLQRAGLAFPLVVKPVRGRGS 198

Query: 139 LGIIVIK---KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM-GDASLDV----- 189
            G+ +++     Q     LL SS++  GD L+ E ++ G ELT  VM   A L       
Sbjct: 199 EGVTLVRDLPSMQRAAAGLLDSSAF--GDALIAETFLAGEELTVTVMPRQADLPAAFSSE 256

Query: 190 TEIAVPKSDFYSYELKYSSLN-STHVLPAKIPLDI-------YKEVQRLAFLAHQAIGCR 241
           T  A+P    +++    +  N +  V    + L +        + + R   LA+  +G R
Sbjct: 257 TASALPPVRRFNHVDGVAPYNGAVAVTRNSVALSVEASMAPEARALVRACLLAYDVVGAR 316

Query: 242 GISRSDFLFDPLSRKVFWL-EINVQPGMTPV---------SIFPEMAAYAGYSFRELLLW 291
              R D   D  +R V+ L ++N++P MT           S+    A   G+ +RELL+ 
Sbjct: 317 APIRIDCRAD--ARGVYQLFDLNMKPNMTGAGRPGREDQDSLSALAARAVGWDYRELLVR 374

Query: 292 MV 293
           M+
Sbjct: 375 MM 376


>gi|83414061|dbj|BAE53821.1| D-alanine:D-alanine ligase [Streptococcus oralis]
 gi|193872904|gb|ACF23142.1| D-alanine-D-alanine ligase [Streptococcus infantis]
 gi|193872934|gb|ACF23157.1| D-alanine-D-alanine ligase [Streptococcus oralis]
          Length = 96

 Score = 47.8 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/93 (33%), Positives = 52/93 (55%), Gaps = 4/93 (4%)

Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVL 215
           ++ +  ++L+EQ V+  E+  G++G+  +  T   E+ V    FY Y+ KY     T  +
Sbjct: 5   AFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDI 63

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           PAKI  D+   +++ A  A +AIG  G+SR DF
Sbjct: 64  PAKISDDVVAIMRQNAETAFRAIGGLGLSRCDF 96


>gi|13509025|emb|CAC35263.1| D-alanin-D-alanin ligase [Campylobacter jejuni]
          Length = 160

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 74/147 (50%), Gaps = 9/147 (6%)

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145
           AS LS +K  +K    S GV      ++ R   +S+  ++ P +IKP + GSS+GI ++K
Sbjct: 7   ASVLSFNKELTKLYAKSVGVKTLDCTML-RKNQNSKEKLNFPCIIKPARLGSSIGISIVK 65

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDVTEIAVP-KSDFYSY 202
            ++   L+  +   +   + L++E++ + I+     G M +     + I  P K +F  +
Sbjct: 66  DEKD--LEYAKDVGFEFDNDLVVEEFKNNIKEYNLAGCMINDEFVFSIIEEPKKKEFLDF 123

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           E KY S +  + L   I  D+ +E++ 
Sbjct: 124 EQKYLSFSGHNEL---IEADLSEELKE 147


>gi|83414199|dbj|BAE53890.1| D-alanine:D-alanine ligase [Streptococcus intermedius]
          Length = 96

 Score = 47.8 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/92 (33%), Positives = 47/92 (51%), Gaps = 2/92 (2%)

Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGD--ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216
           ++ +  ++LIEQ V+  E+  G+ G+  A   +    V    FY YE KY     T  +P
Sbjct: 5   AFKYDSRVLIEQGVNAREIEVGLFGNEGAKSSLPGEVVKDVAFYDYEAKYIDNKITMDIP 64

Query: 217 AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           AK+  D+   ++  A  A  AIG  G+SR DF
Sbjct: 65  AKLSEDVIATMRDYAEKAFHAIGGVGLSRCDF 96


>gi|83414037|dbj|BAE53809.1| D-alanine:D-alanine ligase [Streptococcus oralis]
 gi|83414041|dbj|BAE53811.1| D-alanine:D-alanine ligase [Streptococcus oralis]
 gi|83414043|dbj|BAE53812.1| D-alanine:D-alanine ligase [Streptococcus oralis]
 gi|83414053|dbj|BAE53817.1| D-alanine:D-alanine ligase [Streptococcus oralis]
 gi|83414063|dbj|BAE53822.1| D-alanine:D-alanine ligase [Streptococcus oralis]
 gi|83414069|dbj|BAE53825.1| D-alanine:D-alanine ligase [Streptococcus oralis]
 gi|83414071|dbj|BAE53826.1| D-alanine:D-alanine ligase [Streptococcus oralis]
 gi|83414075|dbj|BAE53828.1| D-alanine:D-alanine ligase [Streptococcus oralis]
 gi|193872922|gb|ACF23151.1| D-alanine-D-alanine ligase [Streptococcus oralis]
 gi|193872924|gb|ACF23152.1| D-alanine-D-alanine ligase [Streptococcus oralis]
 gi|193873046|gb|ACF23213.1| D-alanine-D-alanine ligase [Streptococcus oralis]
 gi|193873056|gb|ACF23218.1| D-alanine-D-alanine ligase [Streptococcus oralis]
          Length = 96

 Score = 47.8 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/93 (33%), Positives = 51/93 (54%), Gaps = 4/93 (4%)

Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVL 215
           ++ +  ++L+EQ V+  E+  G++G+  +  T   E+ V    FY Y+ KY     T  +
Sbjct: 5   AFQYDSRVLVEQGVNAREIEVGLLGNYEVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDI 63

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           PAKI  D+   ++  A  A +AIG  G+SR DF
Sbjct: 64  PAKISDDVVAVMRHNAETAFRAIGGLGLSRCDF 96


>gi|325959933|ref|YP_004291399.1| ATP-grasp fold domain-containing protein [Methanobacterium sp.
           AL-21]
 gi|325331365|gb|ADZ10427.1| ATP-grasp fold domain protein, DUF201-type [Methanobacterium sp.
           AL-21]
          Length = 379

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 61/253 (24%), Positives = 111/253 (43%), Gaps = 38/253 (15%)

Query: 68  VQAILELLE----IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV----NRFTMD 119
           V  + E+LE    IP   SG+ A+++  DK+++KQ      +   P        N   + 
Sbjct: 78  VAKMKEILEKDHGIPVASSGVKAASICADKIKTKQFFVDNSIE-TPEFFKLSKNNNANLL 136

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
           ++ L   P V+K   G    GI ++ K + +       + ++  D+ L E++++G E++ 
Sbjct: 137 TKLLSKSPVVLKQGSGQGGSGIKIVSKFEEV------GNYFDGFDETLAEKFLEGYEVSI 190

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA--KIPLDI--------YKEVQR 229
            V+      +  + V K          +++N  H L    K PLDI         +E+++
Sbjct: 191 EVLRWNGKTIPLVPVHKGK--------TTINGLHPLKKVKKAPLDIDGVDNDLNNEEIRK 242

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           +A      +   G +  D +FD  + K + +EIN +P  T    +   AA   Y  +EL+
Sbjct: 243 IAIKIADTLNLEGTADIDLIFDMKTGKNYVIEINARPSGTR---YITGAATNVYIMQELV 299

Query: 290 LWM--VEDASCLR 300
             +  V D S LR
Sbjct: 300 KMVSGVWDPSELR 312


>gi|310658734|ref|YP_003936455.1| hypothetical protein CLOST_1430 [Clostridium sticklandii DSM 519]
 gi|308825512|emb|CBH21550.1| protein of unknown function [Clostridium sticklandii]
          Length = 408

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/142 (23%), Positives = 69/142 (48%), Gaps = 5/142 (3%)

Query: 92  DKMRSKQVVSSCGVPVCPSILVNRFTMDSQ-HLISPPYVIKPLKGGSSLGIIVIKKDQSI 150
           +K + KQ+     +P      +++  M+ +   ++PPYVIKP+      G+  +   + I
Sbjct: 99  NKSKMKQIFEKNNIPTAKFRFISKNFMEEELSNLNPPYVIKPIDSQGQRGVYKLNTIEEI 158

Query: 151 PLDLLQSSSWNHGDQLLIEQYVDGIELTC-GVMGDASLDVTEIAVPKSDFYSYELKYSSL 209
             D+    +++  +  LIE+Y +  E+T  G + +  L +  I   ++ F S   K+  +
Sbjct: 159 KTDIDSVLTFSRDNIALIEEYYESDEITVSGWVYNKKLKILTIT-DRNTFSSG--KHIGI 215

Query: 210 NSTHVLPAKIPLDIYKEVQRLA 231
             +HV P+K     YKE+  ++
Sbjct: 216 CKSHVFPSKYYDKYYKEIHDIS 237


>gi|83415058|dbj|BAE53788.1| D-alanine:D-alanine ligase [Streptococcus anginosus]
          Length = 96

 Score = 47.4 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 49/92 (53%), Gaps = 2/92 (2%)

Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGD--ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216
           ++ +  ++LIEQ V+  E+  G++G+  A   +    V    FY YE KY     T  +P
Sbjct: 5   AFKYDSRVLIEQGVNAREIEVGLLGNEGAKSSLPGEVVKDVAFYDYEAKYIDNKITIDIP 64

Query: 217 AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           AK+  D+   +++ A  A  AIG  G++R DF
Sbjct: 65  AKLSEDVIATMRQYAEKAFHAIGGVGLARCDF 96


>gi|193872920|gb|ACF23150.1| D-alanine-D-alanine ligase [Streptococcus oralis]
          Length = 96

 Score = 47.4 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/93 (33%), Positives = 51/93 (54%), Gaps = 4/93 (4%)

Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVL 215
           ++ +  ++L+EQ V+  E+  G++G+  +  T   E+ V    FY Y+ KY     T  +
Sbjct: 5   AFQYDSRILVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDI 63

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           PAKI  D+   ++  A  A +AIG  G+SR DF
Sbjct: 64  PAKISDDVAAVMRHNAETAFRAIGGLGLSRCDF 96


>gi|154342794|ref|XP_001567345.1| methylcrotonoyl-coa carboxylase biotinylated subunitprotein-like
           protein [Leishmania braziliensis MHOM/BR/75/M2904]
          Length = 687

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 46/233 (19%), Positives = 102/233 (43%), Gaps = 33/233 (14%)

Query: 49  LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSM--DKMRSKQVVSSCGVP 106
           + P   F   + +F  D + ++ +E +  P       ASA+S    K  SK+++   GVP
Sbjct: 89  IHPGYGFLSENADFA-DAVTRSGIEFIGPP-------ASAISAMGSKSESKRIMEVAGVP 140

Query: 107 VCPSILVNR----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSS 158
           V P    +     F  +    +  P +IK + GG   G+ ++++ +     L     +++
Sbjct: 141 VVPGYYGDNQTAGFLAEEADKVGFPILIKAVSGGGGKGMKIVERPEDFAFMLESAKREAT 200

Query: 159 SWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFY-----SYELKYSSLNST 212
           ++   D++++E+YV     + C +  D           +  F+     S + +Y  +   
Sbjct: 201 NFFKDDRVILERYVKRSRHIECQIFCDKH--------SRGVFFFERDCSVQRRYQKVLEE 252

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
              P  + ++  + +  +A  A +A+G  G    +F+FD  +   +++E+N +
Sbjct: 253 APAP-HLSMETRQRIGEVALQAAKAVGYVGAGTVEFIFDTSTGDFYFMEMNTR 304


>gi|37783477|gb|AAP41866.1| D-alanin-D-alanin ligase [Campylobacter jejuni]
          Length = 160

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 74/147 (50%), Gaps = 9/147 (6%)

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145
           AS LS +K  +K    S GV      ++ R   +S+  +S P +IKP + GSS+GI ++K
Sbjct: 7   ASVLSFNKELTKLYAKSVGVKTLDYTIL-RKNQNSKEKLSFPCIIKPARLGSSIGISIVK 65

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDVTEIAVP-KSDFYSY 202
            ++   L+  +   +   + L++E++ + I+     G M +     + I  P K +F  +
Sbjct: 66  DEKD--LEYAKDVGFEFDNDLVVEEFKNNIKEYNLAGCMINDEFVFSIIEEPKKKEFLDF 123

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           E KY S +  + L   I  D+ +E++ 
Sbjct: 124 EQKYLSFSGHNGL---IEADLSEELKE 147


>gi|322505476|emb|CAM42777.2| methylcrotonoyl-coa carboxylase biotinylated subunitprotein-like
           protein [Leishmania braziliensis MHOM/BR/75/M2904]
          Length = 687

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 46/233 (19%), Positives = 102/233 (43%), Gaps = 33/233 (14%)

Query: 49  LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSM--DKMRSKQVVSSCGVP 106
           + P   F   + +F  D + ++ +E +  P       ASA+S    K  SK+++   GVP
Sbjct: 89  IHPGYGFLSENADFA-DAVTRSGIEFIGPP-------ASAISAMGSKSESKRIMEVAGVP 140

Query: 107 VCPSILVNR----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSS 158
           V P    +     F  +    +  P +IK + GG   G+ ++++ +     L     +++
Sbjct: 141 VVPGYYGDNQTAGFLAEEADKVGFPILIKAVSGGGGKGMKIVERPEDFAFMLESAKREAT 200

Query: 159 SWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFY-----SYELKYSSLNST 212
           ++   D++++E+YV     + C +  D           +  F+     S + +Y  +   
Sbjct: 201 NFFKDDRVILERYVKRSRHIECQIFCDKH--------SRGVFFFERDCSVQRRYQKVLEE 252

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
              P  + ++  + +  +A  A +A+G  G    +F+FD  +   +++E+N +
Sbjct: 253 APAP-HLSMETRQRIGEVALQAAKAVGYVGAGTVEFIFDTSTGDFYFMEMNTR 304


>gi|153954719|ref|YP_001395484.1| hypothetical protein CKL_2101 [Clostridium kluyveri DSM 555]
 gi|219855183|ref|YP_002472305.1| hypothetical protein CKR_1840 [Clostridium kluyveri NBRC 12016]
 gi|146347577|gb|EDK34113.1| Conserved hypothetical protein [Clostridium kluyveri DSM 555]
 gi|219568907|dbj|BAH06891.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 401

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 32/122 (26%), Positives = 64/122 (52%), Gaps = 5/122 (4%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP---PYVIKP 132
           EI   H  I A+ L++DK++ K+V+   G+ V P   +N    D +  I+    P VIKP
Sbjct: 87  EIGVKHIPIEAACLTVDKLKMKEVLKKAGINVPPFRKINSLN-DLKKFINEYAYPVVIKP 145

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL-TCGVMGDASLDVTE 191
           +    + G++ + +   +   L +S S +    +++E++++G ++ T G+M +    +T 
Sbjct: 146 VDNSGARGVLRLTEAVDLTWALNESKSNSRSGDVMVEKFLEGNQISTEGIMYEDEFYITG 205

Query: 192 IA 193
            A
Sbjct: 206 FA 207


>gi|83414073|dbj|BAE53827.1| D-alanine:D-alanine ligase [Streptococcus oralis]
 gi|83414093|dbj|BAE53837.1| D-alanine:D-alanine ligase [Streptococcus oralis]
 gi|193872856|gb|ACF23118.1| D-alanine-D-alanine ligase [Streptococcus oralis]
 gi|193872902|gb|ACF23141.1| D-alanine-D-alanine ligase [Streptococcus infantis]
 gi|193872916|gb|ACF23148.1| D-alanine-D-alanine ligase [Streptococcus oralis]
          Length = 96

 Score = 47.4 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/93 (33%), Positives = 51/93 (54%), Gaps = 4/93 (4%)

Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVL 215
           ++ +  ++L+EQ V+  E+  G++G+  +  T   E+ V    FY Y+ KY     T  +
Sbjct: 5   AFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDI 63

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           PAKI  D+   ++  A  A +AIG  G+SR DF
Sbjct: 64  PAKISDDVVAVMRHNAETAFRAIGGLGLSRCDF 96


>gi|322494078|emb|CBZ29376.1| methylcrotonoyl-coa carboxylase biotinylated subunitprotein-like
           protein [Leishmania mexicana MHOM/GT/2001/U1103]
          Length = 687

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 46/233 (19%), Positives = 104/233 (44%), Gaps = 33/233 (14%)

Query: 49  LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSM--DKMRSKQVVSSCGVP 106
           + P   F   + +F  D + ++ +E +  P       ASA+S+   K  SK+++ + GVP
Sbjct: 89  IHPGYGFLSENADFA-DAVTRSGIEFIGPP-------ASAISLMGSKSESKRIMEAAGVP 140

Query: 107 VCPSILVNR----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSS 158
           V P          F  +  + +  P +IK + GG   G+ ++++ +     L     ++ 
Sbjct: 141 VVPGYYGENQNVSFLAEEANKVGFPILIKAVSGGGGKGMKIVERLEDFAFMLASAKREAV 200

Query: 159 SWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFY-----SYELKYSSLNST 212
           ++   D++++E+YV     + C +  D           +  F+     S + +Y  +   
Sbjct: 201 NFFKDDRVILERYVKRPRHIECQIFFDKH--------GRGVFFFERDCSVQRRYQKVLEE 252

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
              P  + +++ + +  +A  A +A+G  G    +F+FD  +   +++E+N +
Sbjct: 253 APAP-HLSMEMRQRIGEVALQAAKAVGYVGAGTVEFIFDTSTGDFYFMEMNTR 304


>gi|119486250|ref|ZP_01620309.1| D-alanine--D-alanine ligase [Lyngbya sp. PCC 8106]
 gi|119456463|gb|EAW37593.1| D-alanine--D-alanine ligase [Lyngbya sp. PCC 8106]
          Length = 291

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 49/228 (21%), Positives = 99/228 (43%), Gaps = 22/228 (9%)

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           +AL+ +K +++ VV++ GV V  +    +        + PP+++KP    +SLG+ +++ 
Sbjct: 49  TALATNKAQTRSVVAASGVRVAKA---QQLRPGDTLTMQPPFIVKPNSEDNSLGVTLVQN 105

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM-GDASLDV--------TEIAVPKS 197
              I   L     +   + LL+E Y+ G E+   V+  +  L V        TE    ++
Sbjct: 106 PDQITEAL--RIGFELDEILLVEDYIPGREIRVAVVEREGKLCVLPMIEYLFTEEHPIRT 163

Query: 198 DFYSYELKYSSLNSTH--------VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
                 L+   +            V PA +  ++++++   A  AH A+GCR  S  DF 
Sbjct: 164 VQDKLHLQSDGMPEKQPEKPVAKPVCPANVAPELFEKLANAAKNAHIALGCRDYSLYDFR 223

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
               + + + LE  +      +S+   M    G +  ++ L +  +A+
Sbjct: 224 VHAETHEPYMLEAGLFWSFGKISMISRMLIVDGQNLEDVALELWREAA 271


>gi|13509007|emb|CAC35254.1| D-alanin-D-alanin ligase [Campylobacter jejuni]
 gi|13509013|emb|CAC35257.1| D-alanin-D-alanin ligase [Campylobacter jejuni]
          Length = 160

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 74/147 (50%), Gaps = 9/147 (6%)

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145
           AS LS +K  +K    S GV      ++ R   +S+  ++ P +IKP + GSS+GI ++K
Sbjct: 7   ASVLSFNKELTKLYAKSVGVKTLDYTML-RKNQNSKEKLNFPCIIKPARLGSSIGISIVK 65

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDVTEIAVP-KSDFYSY 202
            ++   L+  +   +   + L++E++ + I+     G M +     + I  P K +F  +
Sbjct: 66  DEKD--LEYAKDVGFEFDNDLVVEEFKNNIKEYNLAGCMINDEFVFSIIEEPKKKEFLDF 123

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           E KY S +  + L   I  D+ +E++ 
Sbjct: 124 EQKYLSFSGHNEL---IEADLSEELKE 147


>gi|222522065|gb|ACM62807.1| D-ala-D-ala ligase-like protein [Streptococcus uberis]
          Length = 118

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 61/121 (50%), Gaps = 8/121 (6%)

Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIP-LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
           P  +KP   GSS+GI    K +SI  L    + +  +  ++LIEQ V   E+  G++G+ 
Sbjct: 2   PIFVKPANMGSSVGI---SKAESIEGLREAIALALKYDSRILIEQGVVAREIEVGLLGNT 58

Query: 186 SLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            +  T   E+ +    FY Y+ KY     +  +PA I  DI  +++  A  A +AIG  G
Sbjct: 59  KVTSTLPGEV-IKDVAFYDYQAKYIDNKISMAIPAAINEDITSQMRYFAEQAFKAIGACG 117

Query: 243 I 243
           +
Sbjct: 118 L 118


>gi|193872978|gb|ACF23179.1| D-alanine-D-alanine ligase [Streptococcus mitis]
          Length = 96

 Score = 47.4 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 32/94 (34%), Positives = 50/94 (53%), Gaps = 6/94 (6%)

Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI----AVPKSDFYSYELKYSSLNSTHV 214
           ++ +  ++L+EQ V+  E+  G++G  S DV        V    FY Y+ KY     T  
Sbjct: 5   AFQYDSRVLVEQGVNAREIEVGLLG--SYDVKSTLPGEVVKDVAFYDYDAKYIDNKITMD 62

Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           +PAKI  D+   +++ A  A +AIG  G+SR DF
Sbjct: 63  IPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDF 96


>gi|193872928|gb|ACF23154.1| D-alanine-D-alanine ligase [Streptococcus oralis]
          Length = 96

 Score = 47.0 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/93 (33%), Positives = 51/93 (54%), Gaps = 4/93 (4%)

Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVL 215
           ++ +  ++L+EQ V+  E+  G++G+  +  T   E+ V    FY Y+ KY     T  +
Sbjct: 5   AFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDI 63

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           PAKI  D+   ++  A  A +AIG  G+SR DF
Sbjct: 64  PAKISDDVVAIMRHNAQTAFRAIGGLGLSRCDF 96


>gi|83415052|dbj|BAE53785.1| D-alanine:D-alanine ligase [Streptococcus gordonii]
          Length = 96

 Score = 47.0 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 48/92 (52%), Gaps = 2/92 (2%)

Query: 159 SWNHGDQLLIEQYVDGIELTCGVMG--DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216
           ++ +  ++L+EQ V   E+  G++G  D    +    V    FY Y+ KY     T  +P
Sbjct: 5   AFKYDSRVLVEQGVTAREIEVGLLGNTDVKSSLPGEVVKDVAFYDYQAKYIDNKITMAIP 64

Query: 217 AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           A++P  +   +++ A  A +AIG  G+SR DF
Sbjct: 65  AQLPEGVVNTMRQNAETAFRAIGGLGLSRCDF 96


>gi|83414085|dbj|BAE53833.1| D-alanine:D-alanine ligase [Streptococcus oralis]
 gi|83414099|dbj|BAE53840.1| D-alanine:D-alanine ligase [Streptococcus oralis]
 gi|83414101|dbj|BAE53841.1| D-alanine:D-alanine ligase [Streptococcus oralis]
 gi|83414103|dbj|BAE53842.1| D-alanine:D-alanine ligase [Streptococcus oralis]
 gi|193872930|gb|ACF23155.1| D-alanine-D-alanine ligase [Streptococcus oralis]
          Length = 96

 Score = 47.0 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/93 (33%), Positives = 51/93 (54%), Gaps = 4/93 (4%)

Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVL 215
           ++ +  ++L+EQ V+  E+  G++G+  +  T   E+ V    FY Y+ KY     T  +
Sbjct: 5   AFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDI 63

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           PAKI  D+   ++  A  A +AIG  G+SR DF
Sbjct: 64  PAKISDDVVAIMRHNAETAFRAIGGLGLSRCDF 96


>gi|256380220|ref|YP_003103880.1| carbamoyl-phosphate synthase L chain ATP- binding [Actinosynnema
           mirum DSM 43827]
 gi|255924523|gb|ACU40034.1| Carbamoyl-phosphate synthase L chain ATP- binding [Actinosynnema
           mirum DSM 43827]
          Length = 643

 Score = 47.0 bits (110), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 42/185 (22%), Positives = 82/185 (44%), Gaps = 17/185 (9%)

Query: 92  DKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP------PYVIKPLKGGSSLGIIVIK 145
           DK+++K   ++ GVPV P        M    L++       P ++KP  GG   G+ +++
Sbjct: 117 DKIQAKLTAAAAGVPVVPGR--AEPGMGDDELVAAATEIGFPVLVKPSAGGGGKGMRLVR 174

Query: 146 K----DQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFY 200
           +     +++     ++ +    D LL+E+YV D   +   V+ DA      +   +    
Sbjct: 175 EAAGLREAVESARREARASFGDDALLVERYVSDPRHIEIQVLADAHGTTVHLGERECSLQ 234

Query: 201 SYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260
               K      + +L A    D  + + R A LA +++G  G    +F+ D  + + F+L
Sbjct: 235 RRHQKVIEEAPSPLLDA----DAREAMGRSAVLAAESVGYVGAGTVEFIVDGTTGEHFFL 290

Query: 261 EINVQ 265
           E+N +
Sbjct: 291 EMNTR 295


>gi|13509019|emb|CAC35260.1| D-alanin-D-alanin ligase [Campylobacter jejuni]
 gi|37783471|gb|AAP41863.1| D-alanin-D-alanin ligase [Campylobacter jejuni]
          Length = 160

 Score = 47.0 bits (110), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 67/133 (50%), Gaps = 6/133 (4%)

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145
           AS LS +K  +K    S GV      ++ R   +S+  ++ P +IKP + GSS+GI ++K
Sbjct: 7   ASVLSFNKELTKLYAKSVGVKTLDYTML-RKNQNSKEKLNFPCIIKPARLGSSIGISIVK 65

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDVTEIAVP-KSDFYSY 202
            ++   L+  +   +   + L++E++ + I+     G M +     + I  P K +F  +
Sbjct: 66  DEKD--LEYAKDVGFEFDNDLVVEEFKNNIKEYNLAGCMINDEFVFSIIEEPKKKEFLDF 123

Query: 203 ELKYSSLNSTHVL 215
           E KY S +  + L
Sbjct: 124 EQKYLSFSGHNEL 136


>gi|83415076|dbj|BAE53797.1| D-alanine:D-alanine ligase [Streptococcus mitis]
 gi|193873068|gb|ACF23224.1| D-alanine-D-alanine ligase [Streptococcus mitis]
          Length = 96

 Score = 47.0 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/93 (33%), Positives = 52/93 (55%), Gaps = 4/93 (4%)

Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVL 215
           ++ +  ++L+EQ V+  E+  G++G+  +  T   E+ V    FY Y+ KY     T  +
Sbjct: 5   AFRYDSRVLVEQGVNAREIEVGLLGNYYVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDI 63

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           PAKI  D+   +++ A  A +AIG  G+SR DF
Sbjct: 64  PAKIGDDVVAVMRQNAETAFRAIGGLGLSRCDF 96


>gi|15430592|dbj|BAB64423.1| vancomycin resistance protein C-2 [Enterococcus casseliflavus]
          Length = 115

 Score = 47.0 bits (110), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 30/109 (27%), Positives = 56/109 (51%), Gaps = 4/109 (3%)

Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186
           P   KP + GSS GI  +   + I   L ++  + +   +L+++ + G+E+ CG++G+ S
Sbjct: 9   PVFFKPNEAGSSKGITKVTCVEEIAPALKEA--FAYCSAVLLQKNIAGVEIGCGILGNDS 66

Query: 187 LDVTEIAVPK--SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           L V           F+ +E KY  +++   +PA +P  I  +V+  A L
Sbjct: 67  LTVGACDAISLVEGFFDFEEKYQLISAKITVPAPLPETIETKVKEQAQL 115


>gi|193872914|gb|ACF23147.1| D-alanine-D-alanine ligase [Streptococcus oralis]
          Length = 96

 Score = 47.0 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 30/93 (32%), Positives = 52/93 (55%), Gaps = 4/93 (4%)

Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVL 215
           ++ +  ++L+EQ V+  E+  G++G+  +  T   E+ V    FY Y+ KY     T  +
Sbjct: 5   AFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDI 63

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           PA+I  D+   +++ A  A +AIG  G+SR DF
Sbjct: 64  PARISDDVVAVMRQNAETAFRAIGGLGLSRCDF 96


>gi|21307673|gb|AAL07283.1| ligase VanB2 [Streptococcus lutetiensis]
 gi|21307675|gb|AAL07284.1| ligase VanB2 [Streptococcus gallolyticus]
 gi|21307677|gb|AAL07285.1| ligase VanB2 [Streptococcus gallolyticus]
          Length = 145

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 37/147 (25%), Positives = 69/147 (46%), Gaps = 9/147 (6%)

Query: 92  DKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
           DK  +  +  + G+ V    ++++        ++ P  +KP + GSS G  V K + +  
Sbjct: 1   DKSLAYILTKNAGIAVPEFQMIDKGDKPEAGALTYPVFVKPARSGSSFG--VTKVNGTEE 58

Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS----LDVTEIAVPKSDFYSY---EL 204
           L+    ++  +  ++LIEQ + G E+ C VMG+       +V +I +    F  +   E 
Sbjct: 59  LNAAIEAAGQYDGKILIEQAISGCEVGCAVMGNEDDLIVGEVDQIRLSHGIFRIHQENEP 118

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           +  S N+   +PA IP++    VQ  A
Sbjct: 119 EKGSENAMITVPADIPVEERNRVQETA 145


>gi|83414047|dbj|BAE53814.1| D-alanine:D-alanine ligase [Streptococcus oralis]
 gi|193873060|gb|ACF23220.1| D-alanine-D-alanine ligase [Streptococcus oralis]
          Length = 96

 Score = 47.0 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 30/93 (32%), Positives = 52/93 (55%), Gaps = 4/93 (4%)

Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVL 215
           ++ +  ++L+EQ V+  E+  G++G+  +  T   E+ V    FY Y+ KY     T  +
Sbjct: 5   AFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDI 63

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           PA+I  D+   +++ A  A +AIG  G+SR DF
Sbjct: 64  PARISDDVVAVMRQNAETAFRAIGGLGLSRCDF 96


>gi|255037030|ref|YP_003087651.1| alpha-L-glutamate ligase, RimK family [Dyadobacter fermentans DSM
           18053]
 gi|254949786|gb|ACT94486.1| alpha-L-glutamate ligase, RimK family [Dyadobacter fermentans DSM
           18053]
          Length = 300

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 49/234 (20%), Positives = 108/234 (46%), Gaps = 28/234 (11%)

Query: 70  AILELLEIPYTHSGILASAL--SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ--HLIS 125
           A++  LE+    + + + A+  S DK+RS QV++  G+ +  +++       ++  HL+ 
Sbjct: 75  AVVRQLELMKVFTTVKSQAILRSRDKLRSMQVLAKAGIDIPKTVIAKNPAQVNELIHLVG 134

Query: 126 -PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV---DGIELTCGV 181
            PP VIK L+G   +G+++ +  ++    +   + +      LI++Y+    G ++   V
Sbjct: 135 GPPVVIKLLEGTQGVGVVLAETIKAAKSTI--EAFYGLKANFLIQEYIAESKGADIRAFV 192

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241
           +G+  +   +    + DF S         + H   +   +D+  E ++ A  A +A+G +
Sbjct: 193 IGNKVIAAMKRQGAEGDFRS---------NLHRGGSGCMIDLSPEEEQTAIAAAKALGVK 243

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
            I+  D L    +R    +E+N  PG+  +         +G     +++  +ED
Sbjct: 244 -IAGVDMLQS--ARGPLVMEVNSSPGLRGIE------EVSGLDIASMIVAYIED 288


>gi|261330789|emb|CBH13774.1| 3-methylcrotonyl-CoA carboxylase, putative [Trypanosoma brucei
           gambiense DAL972]
          Length = 739

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 45/194 (23%), Positives = 88/194 (45%), Gaps = 22/194 (11%)

Query: 86  ASALSM-DKMRSKQVVSSCGVPVCPSILVNRFTMD----SQHLISPPYVIKPLKGGSSLG 140
           A+ LSM  K  SK+++ + GVP+ P         D        I  P +IK + GG   G
Sbjct: 179 AAMLSMGSKSESKRIMEAAGVPIVPGYYGEDQNPDRLLHEAKTIGFPVLIKAVSGGGGKG 238

Query: 141 IIVIKKDQSIPLDLLQSS-----SWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAV 194
           + ++ ++    L +L+S+     ++   D++++E+YV     + C +  D S D      
Sbjct: 239 MKIVMEETEFHL-MLESAKREAINFFKDDRVILERYVMHPRHIECQIFFD-SFDNGVF-- 294

Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIP---LDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
               F+  +      +   +  A  P   +D+ + +  +A  A +A+G  G    +F+FD
Sbjct: 295 ----FFERDCSVQRRHQKVIEEAPAPGLSVDMRRRIGDVALTAARAVGYVGAGTVEFIFD 350

Query: 252 PLSRKVFWLEINVQ 265
               + F++E+N +
Sbjct: 351 TEKDEFFFMEMNTR 364


>gi|83414067|dbj|BAE53824.1| D-alanine:D-alanine ligase [Streptococcus oralis]
          Length = 96

 Score = 47.0 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 31/93 (33%), Positives = 51/93 (54%), Gaps = 4/93 (4%)

Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVL 215
           ++ +  ++L+EQ V+  E+  G++G+  +  T   E+ V    FY Y+ KY     T  +
Sbjct: 5   AFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDI 63

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           PAKI  D+   ++  A  A +AIG  G+SR DF
Sbjct: 64  PAKISDDVVAVMRYNAETAFRAIGGLGLSRCDF 96


>gi|13509021|emb|CAC35261.1| D-alanin-D-alanin ligase [Campylobacter jejuni]
 gi|37783479|gb|AAP41867.1| D-alanin-D-alanin ligase [Campylobacter jejuni]
          Length = 160

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 74/147 (50%), Gaps = 9/147 (6%)

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145
           AS LS +K  +K    S GV      ++ R   +S+  ++ P +IKP + GSS+GI ++K
Sbjct: 7   ASILSFNKELTKLYAKSVGVKTLDYTML-RKNQNSKEKLNFPCIIKPARLGSSIGISIVK 65

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDVTEIAVP-KSDFYSY 202
            ++   L+  +   +   + L++E++ + I+     G M +     + I  P K +F  +
Sbjct: 66  DEKD--LEYAKDVGFEFDNDLVVEEFKNNIKEYNLAGCMINDEFVFSIIEEPKKKEFLDF 123

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           E KY S +  + L   I  D+ +E++ 
Sbjct: 124 EQKYLSFSGHNEL---IEADLSEELKE 147


>gi|285017455|ref|YP_003375166.1| ribosomal protein s6 modification protein [Xanthomonas albilineans
           GPE PC73]
 gi|283472673|emb|CBA15178.1| probable ribosomal protein s6 modification protein [Xanthomonas
           albilineans]
          Length = 291

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 50/210 (23%), Positives = 98/210 (46%), Gaps = 28/210 (13%)

Query: 70  AILELLEIPYTHSGILASAL--SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS-- 125
           A+L  LE+   H+   + A+  + DK+R+ Q++++ G+ + P  +      D+  L+S  
Sbjct: 75  AVLRQLEMMGVHTPNPSDAILRARDKLRAHQLLAAKGIDM-PMTVFGDNPDDTGDLLSML 133

Query: 126 --PPYVIKPLKGGSSLGIIVIKKDQSIP--LDLLQSSSWNHGDQLLIEQYV---DGIELT 178
             PP+V+K  +G    G+I+ +K  +    ++ L+  S N     L+++++   +G +L 
Sbjct: 134 GPPPHVVKLNEGAQGTGVILAEKASASRGMVEALRGLSAN----FLVQEFIAEAEGADLR 189

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           C V+GD  +       P+ DF S         + H+             Q +A  + +A+
Sbjct: 190 CFVVGDQVVAAMRRTAPEGDFRS---------NLHLGGTAERYSPSSSEQEVAIRSAKAL 240

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGM 268
           G  G++  D +     R    LE+N  PG+
Sbjct: 241 GL-GVAGVDLISS--RRGPLVLEVNSTPGL 267


>gi|242047032|ref|XP_002461262.1| hypothetical protein SORBIDRAFT_02g043810 [Sorghum bicolor]
 gi|241924639|gb|EER97783.1| hypothetical protein SORBIDRAFT_02g043810 [Sorghum bicolor]
          Length = 603

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 55/234 (23%), Positives = 97/234 (41%), Gaps = 51/234 (21%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDK------------------ 93
           D+ F V+HG FGEDG +Q +LE   +P+  +       + DK                  
Sbjct: 97  DIVFPVIHGKFGEDGGIQELLEKANVPFVGTPSKECQRAFDKKDKLAKPELEAWFKTVNL 156

Query: 94  -MRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152
              + +V+   G  V   +L                 +KP + GSS+G++V         
Sbjct: 157 NKENGKVIGWIGEGVTSDVLEQ---------------VKPTRAGSSIGMVVAYGVNDAAQ 201

Query: 153 DLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTE--IAVPKSDFYSYELKYSSL 209
              +  S    D+++IE +++G +  T  V+   + + +E  + +PK      EL+YS+ 
Sbjct: 202 KAEEIISEGIDDKVIIEVFLEGALSFTTIVVDVGTANNSEPVVLLPK----EVELQYSNS 257

Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
           + T+    K  +  Y    R  +L  + I   G+ ++ FLF   S K   +E N
Sbjct: 258 SDTN----KDTIFNY----RKKYLPSRQIS--GMEQTSFLFQQASTKTTTVETN 301



 Score = 43.9 bits (102), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 45/99 (45%), Gaps = 14/99 (14%)

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS---SCGVPVCP---- 109
           V+HG  GEDG +Q +LE   +P+T  G + S   +DK+ S   V    S GV   P    
Sbjct: 384 VVHGGIGEDGTIQTLLESAGVPFTGPGPIVSRTCIDKVASSLAVDHLVSYGVRTIPKDVR 443

Query: 110 -------SILVNRFTMDSQHLISPPYVIKPLKGGSSLGI 141
                  S LV+ +      L +    +KP + G S G+
Sbjct: 444 ATEEVLKSSLVDIWNELKAKLRTETVCVKPARDGCSTGV 482


>gi|15430590|dbj|BAB64422.1| vancomycin resistance protein C-2 [Enterococcus casseliflavus]
 gi|15430600|dbj|BAB64427.1| vancomycin resistance protein C-2 [Enterococcus casseliflavus]
          Length = 115

 Score = 46.6 bits (109), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 30/109 (27%), Positives = 55/109 (50%), Gaps = 4/109 (3%)

Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186
           P   KP + GSS GI  +   + I   L    ++ +   +L+++ + G+E+ CG++G+ S
Sbjct: 9   PVFFKPNEAGSSKGITKVTCVEEIAPAL--KEAFAYCSAVLLQKNIAGVEIGCGILGNDS 66

Query: 187 LDVTEIAVPK--SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           L V           F+ +E KY  +++   +PA +P  I  +V+  A L
Sbjct: 67  LTVGACDAISLVEGFFDFEEKYQLISAKITVPAPLPETIETKVKEQAQL 115


>gi|83414107|dbj|BAE53844.1| D-alanine:D-alanine ligase [Streptococcus oralis]
 gi|83414109|dbj|BAE53845.1| D-alanine:D-alanine ligase [Streptococcus oralis]
          Length = 96

 Score = 46.6 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 30/93 (32%), Positives = 52/93 (55%), Gaps = 4/93 (4%)

Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVL 215
           ++ +  ++L+EQ V+  E+  G++G+  +  T   E+ V    FY Y+ KY     T  +
Sbjct: 5   AFQYDSRVLVEQGVNAREIEIGLLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDI 63

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           PA+I  D+   +++ A  A +AIG  G+SR DF
Sbjct: 64  PARISDDVVAVMRQNAETAFRAIGGLGLSRCDF 96


>gi|146296639|ref|YP_001180410.1| phosphoribosylaminoimidazole carboxylase ATPase subunit
           [Caldicellulosiruptor saccharolyticus DSM 8903]
 gi|145410215|gb|ABP67219.1| 5-(carboxyamino)imidazole ribonucleotide synthase
           [Caldicellulosiruptor saccharolyticus DSM 8903]
          Length = 384

 Score = 46.6 bits (109), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 50/177 (28%), Positives = 83/177 (46%), Gaps = 15/177 (8%)

Query: 92  DKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGG-SSLGIIVIKKDQSI 150
           DK++ KQV+ S G+PV     V  F +        P V K  KGG    G++V+K    I
Sbjct: 109 DKLKQKQVLQSAGLPVPRFERVESFDISFFENFGFPLVQKATKGGYDGRGVVVLKSKDDI 168

Query: 151 PLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209
              +L++ S+       IE++VD   EL   V  +   DV    V +  F     + +++
Sbjct: 169 N-KVLKTESY-------IEEFVDVEKELAVIVARNKKGDVVSYPVVEMVFD----ETANI 216

Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
               ++PA++  DI  E +++A  A +A+   G+   + LF    RK+   EI  +P
Sbjct: 217 LDILIVPARVEKDIEDEAKKIAIKAVEALQGVGVFGVE-LFLTKDRKILINEIAPRP 272


>gi|193873016|gb|ACF23198.1| D-alanine-D-alanine ligase [Streptococcus mitis]
          Length = 96

 Score = 46.6 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 30/93 (32%), Positives = 52/93 (55%), Gaps = 4/93 (4%)

Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVL 215
           ++ +  ++L+EQ V+  E+  G++G+ ++  T   E+ V    FY Y+ KY     T  +
Sbjct: 5   AFQYDSRVLVEQGVNAREIEVGLLGNYNVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDI 63

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           PA I  D+   +++ A  A +AIG  G+SR DF
Sbjct: 64  PANISDDVVAVMRQNAETAFRAIGGLGLSRCDF 96


>gi|167041454|gb|ABZ06205.1| putative D-ala D-ala ligase [uncultured marine microorganism
           HF4000_007D16]
          Length = 357

 Score = 46.6 bits (109), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 66/273 (24%), Positives = 113/273 (41%), Gaps = 37/273 (13%)

Query: 46  LAHLKPDLAFNVLHGNFGEDGLV--QAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103
           LA  KPDL F+ +   + + G++     LEL +I Y  S   A     DK  +K+++   
Sbjct: 93  LALRKPDLVFSGVKYFYFDSGIIWLNDYLELYDISYIASNREALHNEHDKSIAKKIMQKA 152

Query: 104 GVPVCPSILVNRFTMD-SQHL------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
            +        + FT +  +HL      I+ P  IKPL GG S G+       SI  D L 
Sbjct: 153 NIKTA-----DFFTTEPGEHLTEMSIPIAFPLFIKPLTGGDSRGV----DKNSIVYDFLS 203

Query: 157 SSS------WNHGDQLLIEQYVDGIELTCGVMGDASLDV-----TEIAVPKSD----FYS 201
             +           + L+E Y+ G E +  ++ D S         EI V K+        
Sbjct: 204 FQAKVLDIKRKQNLRSLVETYLPGKEYSVSILQDNSNGNLKAMPIEIVVDKNINGHCILD 263

Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
           Y++K    N    + A     IY ++  L+  A +A+G + + R D   +      F +E
Sbjct: 264 YDIKK---NDQEKVIAVTDNKIYNQLSDLSKDAFKALGGKSLGRIDIKMNHNGVPHF-IE 319

Query: 262 INVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            N+ PG+    ++       G  + +++L + +
Sbjct: 320 ANLMPGLRNGYLYRACLFNLGMGYEQMILTIAD 352


>gi|298674876|ref|YP_003726626.1| hypothetical protein Metev_0936 [Methanohalobium evestigatum
           Z-7303]
 gi|298287864|gb|ADI73830.1| protein of unknown function DUF201 [Methanohalobium evestigatum
           Z-7303]
          Length = 370

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 49/191 (25%), Positives = 89/191 (46%), Gaps = 35/191 (18%)

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145
           A  +S DK +SKQ   S  +P               +    P +IKPL   SS+G+ +I 
Sbjct: 97  AYRISSDKQKSKQYFKSINIPT-----------PKDYPCKLPCIIKPLSESSSIGVSIIH 145

Query: 146 KDQSIPLDLLQSSSWNHGDQL-LIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYEL 204
            ++      L S +    D+L +IE++++G  ++  V+GD     T  AV K      + 
Sbjct: 146 DNK-----YLDSKT----DELKIIEEFIEGDVVSLEVVGDG----TNFAVVKETIVHIDE 192

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           KY      H++    PL+   E +++A+     +G +GI   + + +P   +V  +EI+ 
Sbjct: 193 KY----DCHMV---TPLEHDIEFRKIAYKLASNLGLKGIMDVEAIKNPDDLRV--IEIDA 243

Query: 265 Q-PGMTPVSIF 274
           + P  TP+ ++
Sbjct: 244 RFPSQTPIVVY 254


>gi|83816045|ref|YP_445261.1| D-alanine--D-alanine ligase superfamily protein [Salinibacter ruber
           DSM 13855]
 gi|83757439|gb|ABC45552.1| D-ala D-ala ligase C-terminus superfamily [Salinibacter ruber DSM
           13855]
          Length = 294

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 59/254 (23%), Positives = 105/254 (41%), Gaps = 17/254 (6%)

Query: 52  DLAFNVLHG--NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109
           D A N+  G  +   +  V  +LE+  +P   S  L  ++++DK  +K +V++  +P  P
Sbjct: 28  DAAINITEGAHSRNREAYVPILLEMAGVPCLGSDALTLSVTLDKAWTKDLVAAADIPTPP 87

Query: 110 -SILVNRFTMDSQHLISP-PYVIKPLKGGSSLGIIVIKKDQSIPL--DLLQSSSWNHGDQ 165
             +      +D+  L    P  +KP   G+S GI    K + +      +   +  +   
Sbjct: 88  HRVYSAPEAVDADDLPGAFPLFVKPRYEGTSKGITPDSKVEDVAALRRAVDRITTTYDQD 147

Query: 166 LLIEQYV-DGIELTCGVMGD---ASLDVTEIAV-PKSDFYSYELKYSSLNST-----HVL 215
            + E +V  G E T  V+G     +L V +  V P +    + L++    +      + L
Sbjct: 148 AVAEPFVAGGGEFTVAVVGHDPPEALPVLQRGVEPTTGLGLHALEHRGAPTADQDWEYEL 207

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275
              +   +   +Q L+  A   + CR  +R+DF  D      F LEIN  P   P   F 
Sbjct: 208 RGTLAPALEDRLQALSRRAFDTLDCRDFARADFRVDGDGTPWF-LEINPLPTFKPDDTFA 266

Query: 276 EMAAYAGYSFRELL 289
            +A   G  + + L
Sbjct: 267 IVAELMGRDYVDYL 280


>gi|222546879|gb|ACM66944.1| AccA1 [Streptomyces toxytricini]
          Length = 673

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 39/123 (31%), Positives = 64/123 (52%), Gaps = 15/123 (12%)

Query: 83  GILASALSM--DKMRSKQVVSSCGVPVCP----SILVNRFTMDSQHLISPPYVIKPLKGG 136
           G  ASA+S+  DK+R+K+ V + GVPV P    S L +   +++   I  P ++KP  GG
Sbjct: 104 GPPASAISLMGDKIRAKETVRAAGVPVVPGSSGSGLSDAELVEAAEKIGMPVLLKPSAGG 163

Query: 137 SSLGIIVIKKD----QSIPLDLLQSSSWNHGDQLLIEQYVDG---IELTCGVMGDASLDV 189
              G+ +++      + I     ++ S    D LL+E++VD    IE+   VM DA  +V
Sbjct: 164 GGKGMRLVRDGAVLAEEIAAARREARSSFGDDTLLVERWVDRPRHIEIQ--VMADAHGNV 221

Query: 190 TEI 192
             +
Sbjct: 222 VHL 224


>gi|83414025|dbj|BAE53803.1| D-alanine:D-alanine ligase [Streptococcus mitis]
          Length = 96

 Score = 46.2 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 30/93 (32%), Positives = 52/93 (55%), Gaps = 4/93 (4%)

Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVL 215
           ++ +  ++L+EQ V+  E+  G++G+  +  T   E+ V    FY Y+ KY     +  +
Sbjct: 5   AFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKISMDI 63

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           PAKI  D+   +++ A  A +AIG  G+SR DF
Sbjct: 64  PAKISDDVVAVMRQNAETAFRAIGGLGLSRCDF 96


>gi|77166871|gb|ABA62410.1| D-alanine-D-alanine ligase [Clostridium perfringens]
          Length = 106

 Score = 46.2 bits (108), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 25/92 (27%), Positives = 48/92 (52%), Gaps = 2/92 (2%)

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
            +  +  +++IE+Y+ G E+TC ++    L V  I  PK  F+    KY    +   +  
Sbjct: 4   EALKYDTEVMIEEYIKGDEITCPIIDGKMLPVLAIK-PKGKFFDITSKYEDGGADEFI-V 61

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
           K+  D++KEV+++A   ++ + C   +R D L
Sbjct: 62  KLNEDLHKEVEKMALETYKLLKCDVYARVDML 93


>gi|83415056|dbj|BAE53787.1| D-alanine:D-alanine ligase [Streptococcus sinensis]
          Length = 96

 Score = 46.2 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 29/93 (31%), Positives = 53/93 (56%), Gaps = 4/93 (4%)

Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVL 215
           ++ +  ++L+EQ V+  E+  G++G+ ++  T   E+ V    FY YE KY     T  +
Sbjct: 5   AFKYDSRVLVEQGVNAREIEVGLLGNYAVKSTLPGEV-VKDVAFYDYEAKYIDNRITMDI 63

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           PAKI  ++   ++  A  A +A+G +G++R DF
Sbjct: 64  PAKISDEVTSIMRTNAETAFRALGGQGLARCDF 96


>gi|78358083|ref|YP_389532.1| D-alanine-D-alanine ligase and related ATP-grasp enzyme-like
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           G20]
 gi|78220488|gb|ABB39837.1| D-alanine-D-alanine ligase and related ATP-grasp enzymes-like
           protein [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 351

 Score = 46.2 bits (108), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 54/245 (22%), Positives = 89/245 (36%), Gaps = 44/245 (17%)

Query: 41  SVGLVLAHLKPDLAFNV---LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSK 97
           +  L +A L PD+ FN+   L G+     L  A+     IP+T +   +  LS  K+  K
Sbjct: 50  AASLRIAALNPDVVFNLVEELDGDIAMAPLAPALFAHAGIPFTGADAASMTLSGSKLLCK 109

Query: 98  QVVSSCGVPVCPSILVNR---------FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQ 148
           Q+++  G  +C    V               +   I   Y+ K +   +SLG+     D 
Sbjct: 110 QILT--GADICTPAWVTADGVCGGMGDLPRTADAFIPGRYLCKSVHEHASLGL-----DD 162

Query: 149 SIPLDLLQSSS---------WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDF 199
           S  +D +Q+             HG     EQYV+G E     + D +  V  +   + +F
Sbjct: 163 SCIVDAVQTGDVMAALMRCRTRHGGTWFAEQYVEGREFNIAAIADGNGGVHVLPCAEIEF 222

Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH----------------QAIGCRGI 243
             Y  +   +        +   +    V+R  F A                 +A G  G 
Sbjct: 223 RGYAPERPRIVGYAAKWHQDSFECSNTVRRFDFCAEDSALLELLRTVTVRCWRAFGLAGY 282

Query: 244 SRSDF 248
           +R DF
Sbjct: 283 ARIDF 287


>gi|77166873|gb|ABA62411.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|77166877|gb|ABA62413.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|77166879|gb|ABA62414.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|77166881|gb|ABA62415.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|77166897|gb|ABA62423.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|77166899|gb|ABA62424.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|77166905|gb|ABA62427.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|77166915|gb|ABA62432.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|77166919|gb|ABA62434.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|77166925|gb|ABA62437.1| D-alanine-D-alanine ligase [Clostridium perfringens]
          Length = 106

 Score = 46.2 bits (108), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 25/92 (27%), Positives = 48/92 (52%), Gaps = 2/92 (2%)

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
            +  +  +++IE+Y+ G E+TC ++    L V  I  PK  F+    KY    +   +  
Sbjct: 4   EALKYDTEVMIEEYIKGDEITCPIIDGKMLPVLAIK-PKGKFFDIASKYEDGGADEFI-V 61

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
           K+  D++KEV+++A   ++ + C   +R D L
Sbjct: 62  KLNEDLHKEVEKMALETYKLLKCDVYARVDML 93


>gi|13509017|emb|CAC35259.1| D-alanin-D-alanin ligase [Campylobacter jejuni]
          Length = 160

 Score = 46.2 bits (108), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 73/147 (49%), Gaps = 9/147 (6%)

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145
           AS LS +K  +K    S GV      ++ R   +S+  ++ P +IKP + GSS+GI ++K
Sbjct: 7   ASVLSFNKELTKLYAKSVGVKTLDYTML-RKNQNSKEKLNFPCIIKPARLGSSIGISIVK 65

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDVTEIAVP-KSDFYSY 202
            ++   L+  +   +   + L++E + + I+     G M +     + I  P K +F  +
Sbjct: 66  DEKD--LEYAKDVGFEFDNDLVVEDFKNNIKEYNLAGCMINDEFVFSIIEEPKKKEFLDF 123

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           E KY S +  + L   I  D+ +E++ 
Sbjct: 124 EQKYLSFSGHNEL---IEADLSEELKE 147


>gi|302878651|ref|YP_003847215.1| D-alanine--D-alanine ligase domain-containing protein [Gallionella
           capsiferriformans ES-2]
 gi|302581440|gb|ADL55451.1| D-alanine--D-alanine ligase domain protein [Gallionella
           capsiferriformans ES-2]
          Length = 331

 Score = 46.2 bits (108), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 40/144 (27%), Positives = 70/144 (48%), Gaps = 12/144 (8%)

Query: 66  GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL-- 123
            LV AI E   + +    +    ++ DK  +K++ S CG+ + P+  + R   D +++  
Sbjct: 92  ALVPAICETFGLRFIGPDVYGRIVAQDKEVTKRLASDCGI-ITPAWRIVRSVEDLRYISG 150

Query: 124 ISPPYVIKPLKGGSSLGII----VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
           +  P VIKPL  GSS+GI     V+     +PL      ++N    +LIE++V G E+  
Sbjct: 151 LRLPVVIKPLMEGSSIGIAQRNRVVDVADVLPLAKELLETFNQ--PVLIEEFVAGREVAY 208

Query: 180 GVM---GDASLDVTEIAVPKSDFY 200
             +   G  S   +E+ +  +D Y
Sbjct: 209 SKIQHAGAESWAFSEVVIEGNDDY 232


>gi|77166887|gb|ABA62418.1| D-alanine-D-alanine ligase [Clostridium perfringens]
          Length = 106

 Score = 46.2 bits (108), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 25/92 (27%), Positives = 48/92 (52%), Gaps = 2/92 (2%)

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
            +  +  +++IE+Y+ G E+TC ++    L V  I  PK  F+    KY    +   +  
Sbjct: 4   EALKYDTEVMIEEYIKGDEITCPIIDGKMLPVLAIK-PKGKFFDIASKYEDGGADEFI-V 61

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
           K+  D++KEV+++A   ++ + C   +R D L
Sbjct: 62  KLNEDLHKEVEKMALETYKLLKCDVYARVDML 93


>gi|83414137|dbj|BAE53859.1| D-alanine:D-alanine ligase [Streptococcus sanguinis]
          Length = 96

 Score = 46.2 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 28/93 (30%), Positives = 52/93 (55%), Gaps = 4/93 (4%)

Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVL 215
           ++ +  ++L+EQ V   E+  G++G+A +  +   E+ V    FY Y+ KY     T  +
Sbjct: 5   AFKYDSRVLVEQGVTAREIEVGLLGNADVKSSLPGEV-VKDVAFYDYQAKYIDNKITMDI 63

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           PA++P  +   +++ A  A +A+G  G+SR DF
Sbjct: 64  PAQLPEGVVNTMRQNAETAFRALGGLGLSRCDF 96


>gi|154339056|ref|XP_001565750.1| hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904]
          Length = 814

 Score = 46.2 bits (108), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 69/263 (26%), Positives = 112/263 (42%), Gaps = 31/263 (11%)

Query: 29  AGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPY-THSGILAS 87
           A   + +ID  R+V  ++   K D+ FN+  G   E      ++E LE      +G  + 
Sbjct: 296 ADVSMKKIDSYRTVRKLVTSNKYDVFFNLCDGGRDEKRAGVDVVEALEEQNAAFTGTDSR 355

Query: 88  ALSMDKMRSKQVVSSCGVPVCPSILVNR---FTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
                K+  K +V S GV V   +L+N         +HL   P ++K L G +S+GI   
Sbjct: 356 GFEPSKIDMKLMVGSSGVKVPNFVLLNDEEGLAKKCRHL-KFPVIVKHLSGYASVGI--H 412

Query: 145 KKDQSIPLDLLQS------SSWNHGDQLLIEQYVDGIELTCGVMGD-ASLDVTEIAVP-- 195
           K+++   LD L++        +NH    L+E+++ G E T     D  S    ++  P  
Sbjct: 413 KENRCDTLDQLRTRVRGFIKEYNHA---LVEEFIRGREGTVLACADPGSPFGVKVFKPLM 469

Query: 196 ------KSDFYSYELKYS---SLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI-GCRGISR 245
                   DF  +E K++      +   L +  P   Y  +  +A  A + I    G  R
Sbjct: 470 FNFLQSSDDFAYFEKKWTMECGDQAYGFLASSDP--AYPAITEMARNAFKYIMNGVGYGR 527

Query: 246 SDFLFDPLSRKVFWLEINVQPGM 268
            DF  D L+   ++LEIN   GM
Sbjct: 528 VDFRIDELTGAPYFLEINPNCGM 550


>gi|6403499|gb|AAF07839.1|AC010871_15 hypothetical protein [Arabidopsis thaliana]
          Length = 269

 Score = 46.2 bits (108), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 43/77 (55%), Gaps = 3/77 (3%)

Query: 29  AGFKVS-QIDVDRSVGLVLAHLKPDLA--FNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
           AGF ++ ++    S+   + H K   A  F  +HG  GEDG +Q +LE   + YT  G+L
Sbjct: 15  AGFDITDELPRKYSLKEWIKHAKEAQATVFIAVHGGIGEDGTLQGLLEDEGVSYTGPGVL 74

Query: 86  ASALSMDKMRSKQVVSS 102
           AS   MDK+ + Q +S+
Sbjct: 75  ASRTCMDKVMTSQALSN 91


>gi|257057021|ref|YP_003134853.1| acetyl/propionyl-CoA carboxylase, alpha subunit [Saccharomonospora
           viridis DSM 43017]
 gi|256586893|gb|ACU98026.1| acetyl/propionyl-CoA carboxylase, alpha subunit [Saccharomonospora
           viridis DSM 43017]
          Length = 665

 Score = 45.8 bits (107), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 44/186 (23%), Positives = 82/186 (44%), Gaps = 19/186 (10%)

Query: 92  DKMRSKQVVSSCGVPVCPSILVNRFT-----MDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           DK+R+K+ VS+ GVPV P   VN  +     + +   +  P ++KP  GG   G+ ++  
Sbjct: 117 DKIRAKETVSAAGVPVVPG--VNDVSDVDSIVAAAERVGYPVLLKPSAGGGGKGMRLVHT 174

Query: 147 DQSIPLDLLQSSSWNHG----DQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYS 201
              +P  +  +     G    D+LL+E++V +   +   V+ D    V  +   +     
Sbjct: 175 PAELPAAVESAQREARGAFGDDRLLVERFVAEPRHIEIQVLADTHGTVVHLGERECSLQR 234

Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS--RKVFW 259
              K      + VL A    +    + + A  A +++G  G    +F+  P S   + F+
Sbjct: 235 RHQKIVEEAPSAVLDA----ETRARMGKAAVEAARSVGYVGAGTVEFIV-PASAPEEFFF 289

Query: 260 LEINVQ 265
           LE+N +
Sbjct: 290 LEMNTR 295


>gi|15430598|dbj|BAB64426.1| vancomycin resistance protein C-2 [Enterococcus casseliflavus]
          Length = 115

 Score = 45.8 bits (107), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 30/109 (27%), Positives = 56/109 (51%), Gaps = 4/109 (3%)

Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186
           P   KP + GSS GI  +   + I   L ++  + +   +L+++ + G+E+ CG++G+ S
Sbjct: 9   PVFFKPNEAGSSKGITKVTCVEEIAPALKEA--FAYCSAVLLQKNIAGVEIGCGILGNDS 66

Query: 187 LDVTEIAVPK--SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           L V           F+ +E KY  +++   +PA +P  I  +V+  A L
Sbjct: 67  LTVGACDAISLVYGFFDFEEKYQLISAKITVPAPLPETIETKVKEQAQL 115


>gi|115449421|ref|XP_001218602.1| predicted protein [Aspergillus terreus NIH2624]
 gi|114187551|gb|EAU29251.1| predicted protein [Aspergillus terreus NIH2624]
          Length = 262

 Score = 45.8 bits (107), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 55/221 (24%), Positives = 88/221 (39%), Gaps = 30/221 (13%)

Query: 58  LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---N 114
            HG    +  V A+L+  +IPYT S     AL   K  +K +++   +P  P  L+   N
Sbjct: 5   FHGT-SRESQVPALLDAYQIPYTFSDSNTMALCQHKANTKAILNHYRIPTAPFFLLSIGN 63

Query: 115 RFTMDSQHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN-----HGDQ 165
                S  +    +S P  +KP+  GSS GI    K   I    L+++  N      G  
Sbjct: 64  VLPKSSSEIHTSALSFPVFLKPVSEGSSKGIDDFNKVNDIA--GLETAVQNLKSRYPGQD 121

Query: 166 LLIEQYVDGIELTCGVMGDAS----LDVTEIAVP---KSDFYSYELKYSSLNSTHVLPAK 218
           +L+E ++ G E T  ++G  +    + V E       K D     L +++  +       
Sbjct: 122 ILVESFLSGPEYTVSILGTGTHSRVVGVREHIWQNRIKDDGCGTNLNFATRENKSTAGTG 181

Query: 219 IPLD--------IYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
           +             K   ++A  A +A GCR   R D  FD
Sbjct: 182 LAWSDSHDMADPRIKAACQVALDAWKAFGCRDAGRVDIRFD 222


>gi|83414131|dbj|BAE53856.1| D-alanine:D-alanine ligase [Streptococcus sanguinis]
          Length = 96

 Score = 45.8 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 27/92 (29%), Positives = 48/92 (52%), Gaps = 2/92 (2%)

Query: 159 SWNHGDQLLIEQYVDGIELTCGVMG--DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216
           ++ +  ++L+EQ V   E+  G++G  D    +    V    FY Y+ KY     T  +P
Sbjct: 5   AFKYDSRVLVEQGVTAREIEVGLLGNVDVKSSLPGEVVKDVAFYDYQAKYIDNKITMAIP 64

Query: 217 AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           A++P  +   +++ A  A +A+G  G+SR DF
Sbjct: 65  AQLPEGVVNTMRQNAETAFRALGGLGLSRCDF 96


>gi|317055158|ref|YP_004103625.1| ATP-dependent carboxylate-amine ligase domain-containing protein
           [Ruminococcus albus 7]
 gi|315447427|gb|ADU20991.1| ATP-dependent carboxylate-amine ligase domain protein ATP-grasp
           [Ruminococcus albus 7]
          Length = 420

 Score = 45.8 bits (107), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 26/88 (29%), Positives = 49/88 (55%), Gaps = 1/88 (1%)

Query: 92  DKMRSKQVVSSCGVPVCPSILVNR-FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150
           DK ++K ++ S GV V  + ++N+ F+ +    +S P V+KP     S GI V+   + +
Sbjct: 104 DKKQAKDLLRSLGVSVPENRIINKDFSDEDIKGLSFPLVVKPSNAWGSKGIYVVNNSEEL 163

Query: 151 PLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            L   +S+  +H +++L+E+Y  G E  
Sbjct: 164 RLYAEKSAEISHSEKVLVEEYSKGGEYN 191


>gi|158335744|ref|YP_001516916.1| D-alanine--D-alanine ligase A [Acaryochloris marina MBIC11017]
 gi|158305985|gb|ABW27602.1| D-alanine--D-alanine ligase A [Acaryochloris marina MBIC11017]
          Length = 330

 Score = 45.8 bits (107), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 40/141 (28%), Positives = 64/141 (45%), Gaps = 10/141 (7%)

Query: 51  PDLAFNVLHGNFGED--GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
           PDL +N+  G    +   L  A+LE L IPYT       +L+++K   K V+  CG+   
Sbjct: 66  PDLVWNLSVGALSRNRTALAPALLEHLGIPYTGGDAATKSLTLNKDWLKPVLEWCGIATP 125

Query: 109 PSILVNRFTMDSQHLISPPY---VIKPLKGGSSLGIIVIKKDQSIP--LDLLQSSSWNHG 163
           P     RF ++      PP+   ++KP   G SLG+   +    +      +Q       
Sbjct: 126 P---WRRFGLEESITELPPWPVSLLKPTCEGYSLGLQRFETQDGLAVLQKQVQQLQSQFQ 182

Query: 164 DQLLIEQYVDGIELTCGVMGD 184
             +L E  + G E+T GV+G+
Sbjct: 183 TAVLCEPLIAGREITVGVVGN 203


>gi|71410983|ref|XP_807760.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70871830|gb|EAN85909.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 513

 Score = 45.8 bits (107), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 64/243 (26%), Positives = 102/243 (41%), Gaps = 39/243 (16%)

Query: 52  DLAFNVLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV 107
           D+ +N   G   ED     +VQA LE  ++P+T  G ++    + K   K++   C V  
Sbjct: 71  DVFYNQCDGAIDEDKAGVEVVQA-LESFKVPFT--GAISKYYELSKPEMKRMAHYCAVKT 127

Query: 108 CPSILVN-----RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
            P  ++      R    + H    P ++K + G SS+G+   K  +   +D L+      
Sbjct: 128 APYAVLEAGDNVRELCAALHF---PLIVKHISGYSSVGMD--KSCKVYDMDALKERVARF 182

Query: 163 GDQL---LIEQYVDGIELTCGVMGDAS-------LDVTEIAVPK-SDFYSYELKYSSLNS 211
            DQ    L+E+++ G E T  V  DAS            +  P+  DF  + LK+ +   
Sbjct: 183 IDQYQSALVEEFISGDEATVLVCADASQPGGIRVFPPVMVQFPEGEDFKHFHLKWETYEG 242

Query: 212 ------THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                 +   PA +P  I+  + R AFL    +G  G  R D   D     V +LEIN  
Sbjct: 243 MIWRLVSEDDPA-LPDIIH--IARTAFL--HMMGGVGYGRVDVRIDREKNTVVFLEINPN 297

Query: 266 PGM 268
            G+
Sbjct: 298 CGI 300


>gi|193872918|gb|ACF23149.1| D-alanine-D-alanine ligase [Streptococcus oralis]
          Length = 96

 Score = 45.8 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 31/93 (33%), Positives = 50/93 (53%), Gaps = 4/93 (4%)

Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVL 215
           ++ +  ++L+EQ V+  E+  G++G+  +  T   E+ V    FY Y+ KY     T  +
Sbjct: 5   AFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDI 63

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           PAKI  D    ++  A  A +AIG  G+SR DF
Sbjct: 64  PAKISDDAVAVMRHNAETAFRAIGGLGLSRCDF 96


>gi|322822844|gb|EFZ28784.1| hypothetical protein TCSYLVIO_4975 [Trypanosoma cruzi]
          Length = 514

 Score = 45.8 bits (107), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 64/243 (26%), Positives = 102/243 (41%), Gaps = 39/243 (16%)

Query: 52  DLAFNVLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV 107
           D+ +N   G   ED     +VQA LE  ++P+T  G ++    + K   K++   C V  
Sbjct: 72  DVFYNQCDGAIDEDKAGVEVVQA-LESFKVPFT--GAISKYYELSKPEMKRMAHYCAVKT 128

Query: 108 CPSILVN-----RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
            P  ++      R    + H    P ++K + G SS+G+   K  +   +D L+      
Sbjct: 129 APYAVLEAGDNVRELCAALHF---PLIVKHISGYSSVGMD--KSCKVYDMDALKERVARF 183

Query: 163 GDQL---LIEQYVDGIELTCGVMGDAS-------LDVTEIAVPK-SDFYSYELKYSSLNS 211
            DQ    L+E+++ G E T  V  DAS            +  P+  DF  + LK+ +   
Sbjct: 184 IDQYQSALVEEFISGDEATVLVCADASQPGGIRVFPPVMVQFPEGEDFKHFHLKWETYEG 243

Query: 212 ------THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                 +   PA +P  I+  + R AFL    +G  G  R D   D     V +LEIN  
Sbjct: 244 MIWRLVSEDDPA-LPDIIH--IARTAFL--HMMGGVGYGRVDVRIDREKNSVVFLEINPN 298

Query: 266 PGM 268
            G+
Sbjct: 299 CGI 301


>gi|83415060|dbj|BAE53789.1| D-alanine:D-alanine ligase [Streptococcus intermedius]
          Length = 96

 Score = 45.8 bits (107), Expect = 0.008,   Method: Composition-based stats.
 Identities = 31/92 (33%), Positives = 46/92 (50%), Gaps = 2/92 (2%)

Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGD--ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216
           ++ +  ++LIEQ V+  E+  G+ G+  A   +    V    FY YE KY     T  +P
Sbjct: 5   AFKYDSRVLIEQGVNAREIEVGLFGNEGAKSSLPGEVVKDVAFYDYEAKYIDNKITMDIP 64

Query: 217 AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           AK+  D+   +   A  A  AIG  G+SR DF
Sbjct: 65  AKLSEDVIATMCDYAEKAFHAIGGVGLSRCDF 96


>gi|332664347|ref|YP_004447135.1| D-alanine--D-alanine ligase domain-containing protein
           [Haliscomenobacter hydrossis DSM 1100]
 gi|332333161|gb|AEE50262.1| D-alanine--D-alanine ligase domain protein [Haliscomenobacter
           hydrossis DSM 1100]
          Length = 1212

 Score = 45.8 bits (107), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 34/107 (31%), Positives = 56/107 (52%), Gaps = 11/107 (10%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D AF  L G  GEDG +Q  LE+ +IPY  SG   S ++++K+++  V    G      +
Sbjct: 580 DQAFIALQGRPGEDGQLQHELEVRKIPYNGSGPKTSQIAVNKVQTLDVWRRNGFIGPNQL 639

Query: 112 LVNR--FTMDSQHL-------ISPPYVIKPL--KGGSSLGIIVIKKD 147
           LV++  F + ++         +S P+V KP+   GG ++ II  + D
Sbjct: 640 LVSKRAFELSAEEAYQKIESRLSYPFVAKPIDQNGGIAVKIIRNRTD 686


>gi|115433702|ref|XP_001216988.1| hypothetical protein ATEG_08367 [Aspergillus terreus NIH2624]
 gi|114189840|gb|EAU31540.1| hypothetical protein ATEG_08367 [Aspergillus terreus NIH2624]
          Length = 650

 Score = 45.8 bits (107), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 46/189 (24%), Positives = 86/189 (45%), Gaps = 15/189 (7%)

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIKPLKGG 136
           G +  A + DK+++KQ+   C VPV P++   R T D+  +      +  P +IK + GG
Sbjct: 109 GPVTLARTGDKLQAKQLAMECNVPVLPAM--ERPTADATEIRAFARRVGYPVMIKAVDGG 166

Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ-YVDGI-ELTCGVMGDASLDVTEIAV 194
              GI ++++D+ +   +  +   +    + +E+  VDG   +   V+GD + DV  +  
Sbjct: 167 GGRGIRLVRRDEELENAVRGAMGESPSQTVFVEKAAVDGYHHIEVQVVGDGT-DVRHLW- 224

Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
            + D          +     L    PL   ++V   A    +AI  R +   +FL     
Sbjct: 225 -ERDCSVQRRFQKVIEIAPSLMQNRPL--IQQVVDAALRMARAINYRSLGTVEFLVHEQQ 281

Query: 255 RKVFWLEIN 263
           ++ ++LEIN
Sbjct: 282 KEFYFLEIN 290


>gi|72393453|ref|XP_847527.1| 3-methylcrotonyl-CoA carboxylase [Trypanosoma brucei TREU927]
 gi|62175114|gb|AAX69263.1| 3-methylcrotonyl-CoA carboxylase, putative [Trypanosoma brucei]
 gi|70803557|gb|AAZ13461.1| 3-methylcrotonyl-CoA carboxylase, putative [Trypanosoma brucei
           brucei strain 927/4 GUTat10.1]
          Length = 678

 Score = 45.8 bits (107), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 43/194 (22%), Positives = 88/194 (45%), Gaps = 22/194 (11%)

Query: 86  ASALSM-DKMRSKQVVSSCGVPVCPSILVNRFTMD----SQHLISPPYVIKPLKGGSSLG 140
           A+ LSM  K  SK+++ + GVP+ P         D        I  P +IK + GG   G
Sbjct: 118 AAMLSMGSKSESKRIMEAAGVPIVPGYYGEDQNPDRLLHEAKTIGFPVLIKAVSGGGGKG 177

Query: 141 IIVIKKDQSIPLDLLQSS-----SWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAV 194
           + ++ ++    L +L+S+     ++   D++++E+YV     + C +  D+  +      
Sbjct: 178 MKIVMEETEFHL-MLESAKREAINFFKDDRVILERYVMHPRHIECQIFFDSFGN------ 230

Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIP---LDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
               F+  +      +   +  A  P   +D+ + +  +A  A +A+G  G    +F+FD
Sbjct: 231 -GVFFFERDCSVQRRHQKVIEEAPAPGLSVDMRRRIGDVALTAARAVGYVGAGTVEFIFD 289

Query: 252 PLSRKVFWLEINVQ 265
               + F++E+N +
Sbjct: 290 TEKDEFFFMEMNTR 303


>gi|294507128|ref|YP_003571186.1| D-ala D-ala ligase C-terminus superfamily [Salinibacter ruber M8]
 gi|294343456|emb|CBH24234.1| D-ala D-ala ligase C-terminus superfamily [Salinibacter ruber M8]
          Length = 333

 Score = 45.8 bits (107), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 59/254 (23%), Positives = 106/254 (41%), Gaps = 17/254 (6%)

Query: 52  DLAFNVLHG--NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109
           D A N+  G  +   +  V  +LE+  +P   S  L  ++++DK  +K +V++  +P  P
Sbjct: 67  DAAINITEGAHSRNREAYVPILLEMAGVPCLGSDALTLSVTLDKAWTKDLVAAADIPTPP 126

Query: 110 -SILVNRFTMDSQHLISP-PYVIKPLKGGSSLGIIVIKKDQSIPL--DLLQSSSWNHGDQ 165
             +      +D+  L    P  +KP   G+S GI    K + +      +   +  +   
Sbjct: 127 HRVYSAPEAVDADDLPGAFPLFVKPRYEGTSKGITPDSKVEDVAALRGAVDRITTTYDQD 186

Query: 166 LLIEQYV-DGIELTCGVMGD---ASLDVTEIAV-PKSDFYSYELKY-----SSLNSTHVL 215
            + E +V  G E T  V+G     +L V +  V P +    + L++     +  +  + L
Sbjct: 187 AVAEPFVAGGGEFTVAVVGHDPPEALPVLQRGVEPTTGLGLHVLEHRGAPTADRDWEYEL 246

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275
              +   +   +Q L+  A   + CR  +R+DF  D      F LEIN  P   P   F 
Sbjct: 247 RGTLAPALEDRLQALSRRAFDTLDCRDFARADFRVDGDGTPWF-LEINPLPTFKPDDTFA 305

Query: 276 EMAAYAGYSFRELL 289
            +A   G  + + L
Sbjct: 306 IVAELMGRDYVDYL 319


>gi|83415050|dbj|BAE53784.1| D-alanine:D-alanine ligase [Streptococcus cristatus]
          Length = 96

 Score = 45.8 bits (107), Expect = 0.008,   Method: Composition-based stats.
 Identities = 28/93 (30%), Positives = 53/93 (56%), Gaps = 4/93 (4%)

Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVL 215
           ++ +  ++LIEQ V+  E+  G++G+  +  T   E+ +  + FY YE KY     T  +
Sbjct: 5   AFKYDSRVLIEQGVNAREIEVGLLGNYDVRSTLPGEVVIDVA-FYDYEAKYIDNKITMDI 63

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           P KI  ++   ++  A +A +A+G +G++R DF
Sbjct: 64  PVKISGEVISIMRTNAEIAFRALGGQGLARCDF 96


>gi|302875946|ref|YP_003844579.1| D-alanine--D-alanine ligase domain-containing protein [Clostridium
           cellulovorans 743B]
 gi|307686656|ref|ZP_07629102.1| D-alanine--D-alanine ligase [Clostridium cellulovorans 743B]
 gi|302578803|gb|ADL52815.1| D-alanine--D-alanine ligase domain protein [Clostridium
           cellulovorans 743B]
          Length = 346

 Score = 45.4 bits (106), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 52/276 (18%), Positives = 121/276 (43%), Gaps = 21/276 (7%)

Query: 15  SLSSGKACASALEDAGFKVSQIDVDRSVGLV--LAHLKPDLAFNVLH---------GNFG 63
           ++ + +    ALE  G  V  + V+ +  L+  + + + DL ++ ++          N  
Sbjct: 18  NMETTEKMKCALESYGHWVVVLYVESNEELIRHIKYNEYDLVWSSIYYFTDNIKCINNIN 77

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
           E   V  IL  + + Y  +        ++K ++ +++   G+      ++ + +   +  
Sbjct: 78  EKTCVMDILREMGVAYVGANAEVMKNMINKKKTIELLEKYGLSTHQQYVLEKGSAIPKLD 137

Query: 124 ISPPYVIKPLKGGSSLGII---VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            +  + +KP     S G+    ++  ++ +  + +Q    N+    L+E+Y+ G E T  
Sbjct: 138 FTKKWFVKPCFESESNGVSEKSIVHNEEELN-ERVQYILENYNQHALVEEYLSGDEYTTA 196

Query: 181 VMGDAS----LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           ++G+      L +  +   K+ +  Y +   +L +  +L  +IP D  +E+ +LA  A +
Sbjct: 197 IIGNKEKVTVLPIKNVVSSKA-YERYPVITQNLKTDKMLSFEIPYDEMEELNKLAIEAAK 255

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
           A+G     R D   +  S +   +E+N  PG+ P+ 
Sbjct: 256 ALGVCDTVRIDIRKNE-SGEFRVIELNGIPGLNPIK 290


>gi|83414165|dbj|BAE53873.1| D-alanine:D-alanine ligase [Streptococcus parasanguinis]
 gi|83414167|dbj|BAE53874.1| D-alanine:D-alanine ligase [Streptococcus parasanguinis]
 gi|83414169|dbj|BAE53875.1| D-alanine:D-alanine ligase [Streptococcus parasanguinis]
 gi|83414171|dbj|BAE53876.1| D-alanine:D-alanine ligase [Streptococcus parasanguinis]
          Length = 96

 Score = 45.4 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 28/93 (30%), Positives = 52/93 (55%), Gaps = 4/93 (4%)

Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVL 215
           ++ +  ++L+EQ V+  E+  G++G+  +  T   E+ V    FY Y+ KY     T  +
Sbjct: 5   AFKYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMAI 63

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           PA++  ++ K ++  A  A +AIG  G++R DF
Sbjct: 64  PAQLDPEVVKTMRTNAEKAFRAIGGLGLARCDF 96


>gi|289771483|ref|ZP_06530861.1| acetyl/propionyl CoA carboxylase alpha subunit [Streptomyces
           lividans TK24]
 gi|289701682|gb|EFD69111.1| acetyl/propionyl CoA carboxylase alpha subunit [Streptomyces
           lividans TK24]
          Length = 646

 Score = 45.4 bits (106), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 51/97 (52%), Gaps = 10/97 (10%)

Query: 86  ASALSMDKMRSKQVVSSCGVPVCP----SILVNRFTMDSQHLISPPYVIKPLKGGSSLGI 141
           A AL  DK+R+K+ V + GVPV P    S L +    D+   I  P ++KP  GG   G+
Sbjct: 109 AIALMGDKIRAKETVRAAGVPVVPGSSGSGLTDEQLADAAREIGTPVLLKPSAGGGGKGM 168

Query: 142 IVIKKDQSIPLDLLQSSSWNH-----GDQLLIEQYVD 173
            ++ +D ++  D + ++          D LL+E+++D
Sbjct: 169 RLV-RDTAVLADEIAAARREARASFGDDTLLVERWID 204


>gi|193872886|gb|ACF23133.1| D-alanine-D-alanine ligase [Streptococcus mitis]
          Length = 96

 Score = 45.4 bits (106), Expect = 0.010,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 49/92 (53%), Gaps = 2/92 (2%)

Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVT--EIAVPKSDFYSYELKYSSLNSTHVLP 216
           ++ +  ++L+EQ V+  E+  G++G+  +  T     V    FY Y+ KY     T  +P
Sbjct: 5   AFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGKVVKDVAFYDYDAKYIDNKITMDIP 64

Query: 217 AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           AKI  D+   +++ A  A +AIG   +SR DF
Sbjct: 65  AKISDDVVAVMRQNAETAFRAIGGLALSRCDF 96


>gi|322492477|emb|CBZ27752.1| conserved hypothetical protein [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 868

 Score = 45.4 bits (106), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 67/259 (25%), Positives = 111/259 (42%), Gaps = 31/259 (11%)

Query: 33  VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPY-THSGILASALSM 91
           + +ID  R+V  ++   K D+ FN+  G   E      ++E LE      +G  +     
Sbjct: 352 MKKIDSYRAVRKLVTSKKYDVFFNLCDGGRDEKRAGVDVVEALEEQNAAFTGTDSRGFEP 411

Query: 92  DKMRSKQVVSSCGVPVCPSILVNR---FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQ 148
            K+  K +V S GV V   +L++         +HL   P ++K L G +S+GI   K ++
Sbjct: 412 SKIDMKLMVGSSGVKVPNFVLLSNDESLAKKCRHL-KFPVIVKHLSGYASVGI--QKDNR 468

Query: 149 SIPLDLLQS------SSWNHGDQLLIEQYVDGIELTCGVMGD-ASLDVTEIAVP------ 195
              LD L++        +NH    L+E+++ G E T     D  S    ++  P      
Sbjct: 469 CDTLDQLRTKVRGFIKEYNHA---LVEEFIRGREGTVLACADPGSPFGVKVFKPLMFNFL 525

Query: 196 --KSDFYSYELKYS---SLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI-GCRGISRSDFL 249
               DF  +E K++      +   L +  P   Y  +  +A  A + I    G  R DF 
Sbjct: 526 QNNDDFAYFEKKWTMECGDQAYGFLASSDP--AYTAITEMARNAFKYIMNGVGYGRVDFR 583

Query: 250 FDPLSRKVFWLEINVQPGM 268
            D L+ + ++LEIN   GM
Sbjct: 584 IDELTGEPYFLEINPNCGM 602


>gi|325981162|ref|YP_004293564.1| cyanophycin synthetase [Nitrosomonas sp. AL212]
 gi|325530681|gb|ADZ25402.1| cyanophycin synthetase [Nitrosomonas sp. AL212]
          Length = 773

 Score = 45.4 bits (106), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 50/101 (49%), Gaps = 3/101 (2%)

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGII 142
           +A  +S DK  +K ++ SCGVPV    +V   +   ++   I  P VIKP  G    G+ 
Sbjct: 227 IAEGISRDKDLTKTLLQSCGVPVPAGRIVESAKAAWEAAKDIGLPVVIKPCDGNHGRGVF 286

Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           +    QS  ++     + N G  +L+E+YV G E    ++G
Sbjct: 287 IELCQQS-EIESAYQMALNEGSGVLVERYVAGTEHRLLIIG 326


>gi|34495473|ref|NP_899688.1| biotin carboxylase [Chromobacterium violaceum ATCC 12472]
 gi|34101329|gb|AAQ57698.1| probable biotin carboxylase [Chromobacterium violaceum ATCC 12472]
          Length = 654

 Score = 45.4 bits (106), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 48/190 (25%), Positives = 83/190 (43%), Gaps = 28/190 (14%)

Query: 92  DKMRSKQVVSSCGVPVCP----SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147
           DK R++Q++ + GVPV P    +       +++   I  P ++KP  GG   G+ V+  +
Sbjct: 115 DKARARQLMEAAGVPVLPGSPEATESYGLILETCAEIGYPVILKPSAGGGGKGMQVVWSE 174

Query: 148 QSIPLDL-----LQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYS 201
             +   +     +  SS+  G +LL+E+YV     L   + GD            +  + 
Sbjct: 175 AELREAVDAAVRIGRSSFGDG-RLLVERYVSQPRHLEVQIFGDGR---------GAAVHL 224

Query: 202 YELKYSSLNSTHV-----LPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255
           +E +  SL   H       PA  +P D  + +   A    QAIG R     +F+  P  R
Sbjct: 225 FE-RECSLQRRHQKIVEEAPACGLPADTREALLAAAVRGAQAIGYRNAGTFEFILAPDGR 283

Query: 256 KVFWLEINVQ 265
             ++LE+N +
Sbjct: 284 -FYFLEVNTR 292


>gi|21221228|ref|NP_627007.1| acetyl/propionyl CoA carboxylase subunit alpha [Streptomyces
           coelicolor A3(2)]
 gi|7544041|emb|CAB87214.1| acetyl/propionyl CoA carboxylase alpha subunit [Streptomyces
           coelicolor A3(2)]
          Length = 646

 Score = 45.4 bits (106), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 51/97 (52%), Gaps = 10/97 (10%)

Query: 86  ASALSMDKMRSKQVVSSCGVPVCP----SILVNRFTMDSQHLISPPYVIKPLKGGSSLGI 141
           A AL  DK+R+K+ V + GVPV P    S L +    D+   I  P ++KP  GG   G+
Sbjct: 109 AIALMGDKIRAKETVRAAGVPVVPGSSGSGLTDEQLADAAREIGTPVLLKPSAGGGGKGM 168

Query: 142 IVIKKDQSIPLDLLQSSSWNH-----GDQLLIEQYVD 173
            ++ +D ++  D + ++          D LL+E+++D
Sbjct: 169 RLV-RDTAVLADEIAAARREARASFGDDTLLVERWID 204


>gi|288560297|ref|YP_003423783.1| D-alanine-D-alanine ligase [Methanobrevibacter ruminantium M1]
 gi|288543007|gb|ADC46891.1| D-alanine-D-alanine ligase [Methanobrevibacter ruminantium M1]
          Length = 379

 Score = 45.4 bits (106), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 53/227 (23%), Positives = 100/227 (44%), Gaps = 39/227 (17%)

Query: 77  IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--FTMDSQHL----ISPPYVI 130
           IP   S   A  ++ DK+++K+   S G+ V  + ++N+  F+ + + L       P V+
Sbjct: 91  IPVISSNFNAVDIASDKIKTKEFFKSIGLNVPEAKVLNKDDFSNEGEFLEKLGFQFPIVL 150

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQS-SSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           K  +G     I +  + +    D+LQ   S+N   Q L+E +++G E++  V+G     +
Sbjct: 151 KQGEGQGGKDICITSQFE----DVLQYFESFN---QALVENFIEGAEVSIEVIGWNGEYL 203

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVL------PAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
             + V K D        +SL   H +      P        +E ++LA      +G  G 
Sbjct: 204 PLVPVYKGD--------TSLEGIHPIKRLRYGPCDFEAIDNEEFRQLAKKIAVNLGSEGT 255

Query: 244 SRSDFLFDPLSRKVFWLEINVQP-----------GMTPVSIFPEMAA 279
              D ++     KV+ +EIN +P           G++P+ +  ++AA
Sbjct: 256 IDMDLIYSREENKVYAIEINTRPSGTRYLSYATTGLSPLGLLVDIAA 302


>gi|256787590|ref|ZP_05526021.1| acetyl/propionyl CoA carboxylase alpha subunit [Streptomyces
           lividans TK24]
          Length = 655

 Score = 45.4 bits (106), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 51/97 (52%), Gaps = 10/97 (10%)

Query: 86  ASALSMDKMRSKQVVSSCGVPVCP----SILVNRFTMDSQHLISPPYVIKPLKGGSSLGI 141
           A AL  DK+R+K+ V + GVPV P    S L +    D+   I  P ++KP  GG   G+
Sbjct: 118 AIALMGDKIRAKETVRAAGVPVVPGSSGSGLTDEQLADAAREIGTPVLLKPSAGGGGKGM 177

Query: 142 IVIKKDQSIPLDLLQSSSWNH-----GDQLLIEQYVD 173
            ++ +D ++  D + ++          D LL+E+++D
Sbjct: 178 RLV-RDTAVLADEIAAARREARASFGDDTLLVERWID 213


>gi|45658117|ref|YP_002203.1| putative glycolate oxidase [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|45601359|gb|AAS70840.1| putative glycolate oxidase [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
          Length = 760

 Score = 45.4 bits (106), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 43/212 (20%), Positives = 92/212 (43%), Gaps = 11/212 (5%)

Query: 68  VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPP 127
           V A+   L++P        +A +  KMR +   +   +P    +     T D+   ++ P
Sbjct: 91  VAAVANALDLPGIRYVDAEAASNKVKMRERLKKAGIPLPGFAPVWSLSDTRDALEFLNFP 150

Query: 128 YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG-DAS 186
            V+KP     + G+I ++  + +      +  ++   ++++E+Y+ G E++   +  + +
Sbjct: 151 LVMKPADNMGARGVIKVENREELQAAFKHAKKYSPTGEMILEEYMPGPEVSVDALTWNGN 210

Query: 187 LDVTEIA--VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR-GI 243
             +T IA  + + + Y  E+        H +P+ +   I KEV+ + F + +A+G   G 
Sbjct: 211 FVITGIADRIIEREPYFIEMG-------HNMPSALSPSILKEVEEVMFRSMKALGITLGA 263

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275
            + D    P   KV  +   +  G      FP
Sbjct: 264 GKGDIKVTPDGVKVGEIAARLSGGFMSAFTFP 295


>gi|291447622|ref|ZP_06587012.1| D-alanine-D-alanine ligase [Streptomyces roseosporus NRRL 15998]
 gi|291350569|gb|EFE77473.1| D-alanine-D-alanine ligase [Streptomyces roseosporus NRRL 15998]
          Length = 332

 Score = 45.4 bits (106), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 73/317 (23%), Positives = 135/317 (42%), Gaps = 36/317 (11%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-------DRSVGLVLAHLKPDL 53
           +AV+ GG ++E E +L S +  A A  + G   S + V       DR   L+ A  + D+
Sbjct: 17  IAVIAGGRTAEAEGTLGSAEQLARAAAELGHHTSLVSVEAAGHPQDRMSALLKA-AEHDV 75

Query: 54  AFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC----- 108
           A  ++ G       ++  LE L++PY  S  +A+ ++  K     ++ + G+        
Sbjct: 76  AIPLIPG-------LEGTLEFLDVPYVGSSPVAAGIAAHKGLFNDLLVAAGLGKVRYVYG 128

Query: 109 --PSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQL 166
             P +L    +M  +  +S P  +KP + G+S GI  +     +  D + +++  H   +
Sbjct: 129 SGPEVL----SMWQKADMSLPVFVKPARLGASYGISRVTTAHELS-DAINAAA-EHDPVV 182

Query: 167 LIEQYVDG--IELTCGVMGD---ASLDVTEIAVPKSDFYSYELKYSSLN--STHVLPAKI 219
           LIE+ V     E    ++      S    ++ +P++  +   L   SL+  ++  +    
Sbjct: 183 LIEESVPTPFTEYEVPIIAGREIVSAPPGQVCLPQAAEWHDTLSKYSLDAETSRTISRTG 242

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279
             ++   +   A  A    G    +R D   D    +V+  EIN  PG    S FP +  
Sbjct: 243 DAELDSRLMEAALAAASLAGVACAARVDLFVDAHG-QVYVGEINALPGQGFNSNFPRIFE 301

Query: 280 YAGYSFRELLLWMVEDA 296
            AG+S    L  M++ A
Sbjct: 302 LAGFSRPRQLELMIDSA 318


>gi|156742904|ref|YP_001433033.1| carbamoyl-phosphate synthase L chain ATP-binding [Roseiflexus
           castenholzii DSM 13941]
 gi|156234232|gb|ABU59015.1| Carbamoyl-phosphate synthase L chain ATP-binding [Roseiflexus
           castenholzii DSM 13941]
          Length = 484

 Score = 45.1 bits (105), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 44/188 (23%), Positives = 81/188 (43%), Gaps = 23/188 (12%)

Query: 92  DKMRSKQVVSSCGVPVCPSI-------LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
           DK+++K++     VP  P I        +  +  D    I+ P +IK   GG   G++ +
Sbjct: 118 DKIQAKEIARRSNVPTIPGIENVTSAGQITDWMRDQD--IAFPIMIKAASGGGGKGMVRV 175

Query: 145 KKDQSIPLDLLQSSSWNH----GDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDF 199
                IP+ L Q+ S        D +L+E+Y++ G  +   V+ D    V  +       
Sbjct: 176 DTPDQIPVALAQARSEAKKAFGDDTVLVEKYIEHGRHIEVQVVADEHRHVVHL------- 228

Query: 200 YSYELKYSSLNSTHV--LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
           +  E      N   +   P+ +  D+ +E+   A    + IG       +FLFDP ++  
Sbjct: 229 FERECTLQRRNQKIIEEAPSTLENDLRQEICVTAARLMRRIGYTSAGTVEFLFDPATQSF 288

Query: 258 FWLEINVQ 265
           ++LE+N +
Sbjct: 289 YFLEVNTR 296


>gi|49183264|ref|YP_026516.1| D-alanine--D-alanine ligase, C-terminus [Bacillus anthracis str.
           Sterne]
 gi|65317672|ref|ZP_00390631.1| COG1181: D-alanine-D-alanine ligase and related ATP-grasp enzymes
           [Bacillus anthracis str. A2012]
 gi|165871535|ref|ZP_02216181.1| D-alanine--D-alanine ligase (D-alanylalanine
           synthetase)(D-Ala-D-Ala ligase) [Bacillus anthracis str.
           A0488]
 gi|167634137|ref|ZP_02392459.1| D-alanine--D-alanine ligase (D-alanylalanine
           synthetase)(D-Ala-D-Ala ligase) [Bacillus anthracis str.
           A0442]
 gi|167640293|ref|ZP_02398558.1| D-alanine--D-alanine ligase (D-alanylalanine
           synthetase)(D-Ala-D-Ala ligase) [Bacillus anthracis str.
           A0193]
 gi|170687730|ref|ZP_02878945.1| D-alanine--D-alanine ligase (D-alanylalanine
           synthetase)(D-Ala-D-Ala ligase) [Bacillus anthracis str.
           A0465]
 gi|170707870|ref|ZP_02898320.1| D-alanine--D-alanine ligase (D-alanylalanine
           synthetase)(D-Ala-D-Ala ligase) [Bacillus anthracis str.
           A0389]
 gi|177653413|ref|ZP_02935623.1| D-alanine--D-alanine ligase (D-alanylalanine
           synthetase)(D-Ala-D-Ala ligase) [Bacillus anthracis str.
           A0174]
 gi|190567364|ref|ZP_03020278.1| D-alanine--D-alanine ligase (D-alanylalanine
           synthetase)(D-Ala-D-Ala ligase) [Bacillus anthracis
           Tsiankovskii-I]
 gi|227812913|ref|YP_002812922.1| D-alanine--D-alanine ligase [Bacillus anthracis str. CDC 684]
 gi|229604016|ref|YP_002864872.1| D-alanine--D-alanine ligase [Bacillus anthracis str. A0248]
 gi|254686587|ref|ZP_05150446.1| D-alanyl-alanine synthetase A [Bacillus anthracis str. CNEVA-9066]
 gi|254734935|ref|ZP_05192647.1| D-alanyl-alanine synthetase A [Bacillus anthracis str. Western
           North America USA6153]
 gi|254739720|ref|ZP_05197413.1| D-alanyl-alanine synthetase A [Bacillus anthracis str. Kruger B]
 gi|254754909|ref|ZP_05206944.1| D-alanyl-alanine synthetase A [Bacillus anthracis str. Vollum]
 gi|254756952|ref|ZP_05208980.1| D-alanyl-alanine synthetase A [Bacillus anthracis str. Australia
           94]
 gi|49177191|gb|AAT52567.1| D-alanine--D-alanine ligase, C-terminus [Bacillus anthracis str.
           Sterne]
 gi|164712639|gb|EDR18170.1| D-alanine--D-alanine ligase (D-alanylalanine
           synthetase)(D-Ala-D-Ala ligase) [Bacillus anthracis str.
           A0488]
 gi|167511695|gb|EDR87076.1| D-alanine--D-alanine ligase (D-alanylalanine
           synthetase)(D-Ala-D-Ala ligase) [Bacillus anthracis str.
           A0193]
 gi|167530451|gb|EDR93166.1| D-alanine--D-alanine ligase (D-alanylalanine
           synthetase)(D-Ala-D-Ala ligase) [Bacillus anthracis str.
           A0442]
 gi|170127228|gb|EDS96105.1| D-alanine--D-alanine ligase (D-alanylalanine
           synthetase)(D-Ala-D-Ala ligase) [Bacillus anthracis str.
           A0389]
 gi|170668257|gb|EDT19005.1| D-alanine--D-alanine ligase (D-alanylalanine
           synthetase)(D-Ala-D-Ala ligase) [Bacillus anthracis str.
           A0465]
 gi|172081453|gb|EDT66526.1| D-alanine--D-alanine ligase (D-alanylalanine
           synthetase)(D-Ala-D-Ala ligase) [Bacillus anthracis str.
           A0174]
 gi|190561491|gb|EDV15462.1| D-alanine--D-alanine ligase (D-alanylalanine
           synthetase)(D-Ala-D-Ala ligase) [Bacillus anthracis
           Tsiankovskii-I]
 gi|227007521|gb|ACP17264.1| D-alanine--D-alanine ligase [Bacillus anthracis str. CDC 684]
 gi|229268424|gb|ACQ50061.1| D-alanine--D-alanine ligase [Bacillus anthracis str. A0248]
          Length = 91

 Score = 45.1 bits (105), Expect = 0.011,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 38/63 (60%), Gaps = 1/63 (1%)

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           ++R A +A Q++   G++R+DF F     +V+  E+N  PG TP S+FP +  + G  + 
Sbjct: 9   IKRDAIVAFQSLDGAGLTRADF-FLTKDGEVYINEVNTMPGFTPFSMFPLLWQHTGLPYP 67

Query: 287 ELL 289
           EL+
Sbjct: 68  ELI 70


>gi|24214188|ref|NP_711669.1| putative glycolate oxidase [Leptospira interrogans serovar Lai str.
           56601]
 gi|24195089|gb|AAN48687.1| putative glycolate oxidase [Leptospira interrogans serovar Lai str.
           56601]
          Length = 760

 Score = 45.1 bits (105), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 43/212 (20%), Positives = 92/212 (43%), Gaps = 11/212 (5%)

Query: 68  VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPP 127
           V A+   L++P        +A +  KMR +   +   +P    +     T D+   ++ P
Sbjct: 91  VAAVANALDLPGIRYVDAEAASNKVKMRERLKKAGIPLPGFAPVWSLSDTRDALEFLNFP 150

Query: 128 YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG-DAS 186
            V+KP     + G+I ++  + +      +  ++   ++++E+Y+ G E++   +  + +
Sbjct: 151 LVMKPADNMGARGVIKVENREELQAAFKHAKKYSPTGEMILEEYMPGPEVSVDALTWNGN 210

Query: 187 LDVTEIA--VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR-GI 243
             +T IA  + + + Y  E+        H +P+ +   I KEV+ + F + +A+G   G 
Sbjct: 211 FVITGIADRIIEREPYFIEMG-------HNMPSALSPSILKEVEEVMFRSMKALGITLGA 263

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275
            + D    P   KV  +   +  G      FP
Sbjct: 264 GKGDIKVTPDGVKVGEIAARLSGGFMSAFTFP 295


>gi|325972387|ref|YP_004248578.1| D-alanine--D-alanine ligase domain protein [Spirochaeta sp. Buddy]
 gi|324027625|gb|ADY14384.1| D-alanine--D-alanine ligase domain protein [Spirochaeta sp. Buddy]
          Length = 310

 Score = 45.1 bits (105), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 59/248 (23%), Positives = 114/248 (45%), Gaps = 37/248 (14%)

Query: 67  LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP 126
           LV  ILE L + YT   + +  LS DK+ +K+++S   +P  P++    ++ +S+  +  
Sbjct: 75  LVPGILESLHLRYTGCSLSSLFLSTDKVLAKRLLSEHTLPT-PAL----YSKESEKGL-- 127

Query: 127 PYVIKPLKGGSSLGI---IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
            Y+IKP    +S+G+    +++ D+     +L+      G     EQY+DG E T  + G
Sbjct: 128 -YLIKPTTQDASVGLDEQCLVEHDRVQA--VLREKEQEVGCPCFAEQYIDGREFTVCMYG 184

Query: 184 DASLDVTEIAVP----------KSDFYSYELKYS--SLNSTHVLPAKIPLD-----IYKE 226
             + +   I  P           +   +Y+ K++  +    H+  AK   D     + ++
Sbjct: 185 --TKEEAHILPPYEWVFNDYGQNAKIITYDAKWTENTFGYEHI-TAKYTHDEADKALLQQ 241

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           + +++          G +R DF  D  +R  + LE+N  P       F  +A    +SF 
Sbjct: 242 LVQISTSCWNVFDLHGYARVDFRVDDQNRP-YILELNANPSFYG---FYHLAKEWLFSFE 297

Query: 287 ELLLWMVE 294
           +++L++VE
Sbjct: 298 DIVLFLVE 305


>gi|83415062|dbj|BAE53790.1| D-alanine:D-alanine ligase [Streptococcus constellatus]
          Length = 96

 Score = 45.1 bits (105), Expect = 0.012,   Method: Composition-based stats.
 Identities = 29/93 (31%), Positives = 50/93 (53%), Gaps = 4/93 (4%)

Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVL 215
           ++ +  ++LIEQ V+  E+  G++G+     +   E+ V    FY Y+ KY     T  +
Sbjct: 5   AFKYDSRVLIEQGVNAREIEVGLLGNEGAKSSWPGEV-VKDVAFYDYQAKYIDNKITMDI 63

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           PAK+  D+   +++ A  A  AIG  G++R DF
Sbjct: 64  PAKLSEDVIVTMRQYAEKAFHAIGGVGLARCDF 96


>gi|332671724|ref|YP_004454732.1| phosphoribosylamine/glycine ligase [Cellulomonas fimi ATCC 484]
 gi|332340762|gb|AEE47345.1| phosphoribosylamine/glycine ligase [Cellulomonas fimi ATCC 484]
          Length = 431

 Score = 45.1 bits (105), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 31/116 (26%), Positives = 62/116 (53%), Gaps = 5/116 (4%)

Query: 86  ASALSMDKMRSKQVVSSCGVPVC-PSILVNRFTMDSQ-HLISPPYVIKPLKGGSSLGIIV 143
           A+ L   K  +K+V+++ GVP   P +      +++      PPYV+K     +  G++V
Sbjct: 96  AARLEGSKAFAKEVMAAAGVPTAEPRVASTVAEVEAALDAFGPPYVVKEDGLAAGKGVVV 155

Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDF 199
             +D+++ L+  ++     G ++++E+Y+DG E++  V+ D +  V    VP  DF
Sbjct: 156 -TQDRAVALEHGRACVEKEGGRVVVEEYLDGPEVSLFVLTDGTAVVP--LVPAQDF 208


>gi|83414163|dbj|BAE53872.1| D-alanine:D-alanine ligase [Streptococcus cristatus]
          Length = 96

 Score = 45.1 bits (105), Expect = 0.014,   Method: Composition-based stats.
 Identities = 28/93 (30%), Positives = 52/93 (55%), Gaps = 4/93 (4%)

Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVL 215
           ++ +  ++L+EQ V+  E+  G++G+  +  T   E+ V    FY YE KY     T  +
Sbjct: 5   AFKYDSRVLVEQGVNAREIEVGLLGNYDVRSTLPGEV-VKDVAFYDYEAKYIDNKITMDI 63

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           P KI  ++   ++  A +A +A+G +G++R DF
Sbjct: 64  PVKISGEVISIMRTNAEIAFRALGGQGLARCDF 96


>gi|49475570|ref|YP_033611.1| acetyl-CoA carboxylase biotin carboxylase subunit [Bartonella
           henselae str. Houston-1]
 gi|49238377|emb|CAF27604.1| Biotin carboxylase [Bartonella henselae str. Houston-1]
          Length = 452

 Score = 45.1 bits (105), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 49/218 (22%), Positives = 97/218 (44%), Gaps = 19/218 (8%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP----SILVN 114
           +G   E+     +LE  +I +         +  DK+ +K+     G+PV P    +I   
Sbjct: 82  YGFLSENAKFADVLEAHKITFIGPTAAHIRIMGDKIEAKKTAKKLGIPVVPGSDGAITEE 141

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG----DQLLIEQ 170
              +   H I  P +IK   GG   G+ V++ +Q   + L  + S        D + IE+
Sbjct: 142 AEALRIAHEIGYPVIIKASAGGGGRGMKVVRSEQEFAIALETTRSEAAAAFGDDAVYIEK 201

Query: 171 YVDG---IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227
           Y++    IE+   V+GD + +   I + + D  S + ++  +      PA   ++  K++
Sbjct: 202 YLEKPRHIEIQ--VIGDGAGNA--IHLGERDC-SLQRRHQKIWEEATSPALNEIE-RKKI 255

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             +   A   +G RG    +FL++  + K +++E+N +
Sbjct: 256 GDIVANACAQLGYRGAGTIEFLYE--NGKFYFIEMNTR 291


>gi|293401735|ref|ZP_06645876.1| putative carbamoyl-phosphate synthase large chain
           [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291304687|gb|EFE45935.1| putative carbamoyl-phosphate synthase large chain
           [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 379

 Score = 45.1 bits (105), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 36/175 (20%), Positives = 80/175 (45%), Gaps = 18/175 (10%)

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL--ISPPYVIKPLKGGSSLGII 142
           ++  +  +K   ++   + G+ V P  L  +  ++ + L   + P ++KP     S GI 
Sbjct: 95  ISDVICTNKYEMRKAFLANGIDV-PKFLETKGHVEKEQLSSFTFPLIVKPTDRSGSRGIT 153

Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSY 202
            I+  +++   +  ++++    + +IE++++G E +C  +             +  F ++
Sbjct: 154 KIETYEALDKAIQIATAYAFEKKAIIEEFIEGPEYSCECISYQG---------EHTFLAF 204

Query: 203 ELKYSS-----LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR-GISRSDFLFD 251
             KY+S     + + HV P+ IP+D     Q+  F A  A+  + G S  +F  D
Sbjct: 205 TQKYTSGAPHFIETGHVEPSNIPMDKITAYQKEIFKALDALHIQNGASHCEFKID 259


>gi|322707564|gb|EFY99142.1| 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [Metarhizium
           anisopliae ARSEF 23]
          Length = 583

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 31/126 (24%), Positives = 62/126 (49%), Gaps = 11/126 (8%)

Query: 163 GDQLLIEQYVDGIELTCGV--MGDASLDVTEI------AVPKSDFYSYELKYSSLNSTHV 214
            D +++++Y+DG + TC V  MG + + +T           K  F +++LK+       +
Sbjct: 189 NDDVVVQEYIDGKDYTCSVVEMGQSCIALTPFVYNTKQTTSKDKFLTFDLKFDQETRIEL 248

Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRS-DF-LFDPLSRKVFWLEINVQP-GMTPV 271
           L  +    +++ +Q++A  A    GC+G +   D  L    + +VF +E+N QP    P 
Sbjct: 249 LQKQHNPTLFERLQQVALEAFTISGCKGSNMGCDVDLRATTTGEVFAIEVNPQPAAFMPD 308

Query: 272 SIFPEM 277
            +F ++
Sbjct: 309 GVFQDL 314


>gi|322499742|emb|CBZ34816.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 529

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 68/263 (25%), Positives = 111/263 (42%), Gaps = 31/263 (11%)

Query: 29  AGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPY-THSGILAS 87
           A   + +ID  R+V  ++   K D+ FN+  G   E      ++E LE      +G  + 
Sbjct: 11  ADVSMKKIDSYRTVRKLVTSNKYDVFFNLCDGGRDEKRAGVDVVEALEEQNAAFTGTDSR 70

Query: 88  ALSMDKMRSKQVVSSCGVPVCPSILVNR---FTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
                K+  K +V S GV V   +L++         +HL   P ++K L G +S+GI   
Sbjct: 71  GFEPSKIDMKLMVGSSGVKVPNFVLLSNDESLAKKCRHL-KFPVIVKHLSGYASVGI--Q 127

Query: 145 KKDQSIPLDLLQS------SSWNHGDQLLIEQYVDGIELTCGVMGD-ASLDVTEIAVP-- 195
           K  +   LD L++        +NH    L+E+++ G E T     D  S    ++  P  
Sbjct: 128 KDSRCDTLDQLRTKVRGFIKEYNHA---LVEEFIRGREGTVLACADPGSPFGVKVFKPLM 184

Query: 196 ------KSDFYSYELKYS---SLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI-GCRGISR 245
                   DF  +E K++      +   L +  P   Y  +  +A  A + I    G  R
Sbjct: 185 FNFLQNNDDFAYFEKKWTMECGDQAYGFLASSDP--AYTAITDMARNAFKYIMSGVGYGR 242

Query: 246 SDFLFDPLSRKVFWLEINVQPGM 268
            DF  D L+ + ++LEIN   GM
Sbjct: 243 VDFRIDELTGEPYFLEINPNCGM 265


>gi|146089042|ref|XP_001466217.1| hypothetical protein [Leishmania infantum JPCM5]
 gi|134070319|emb|CAM68656.1| conserved hypothetical protein [Leishmania infantum JPCM5]
          Length = 529

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 68/263 (25%), Positives = 111/263 (42%), Gaps = 31/263 (11%)

Query: 29  AGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPY-THSGILAS 87
           A   + +ID  R+V  ++   K D+ FN+  G   E      ++E LE      +G  + 
Sbjct: 11  ADVSMKKIDSYRTVRKLVTSNKYDVFFNLCDGGRDEKRAGVDVVEALEEQNAAFTGTDSR 70

Query: 88  ALSMDKMRSKQVVSSCGVPVCPSILVNR---FTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
                K+  K +V S GV V   +L++         +HL   P ++K L G +S+GI   
Sbjct: 71  GFEPSKIDMKLMVGSSGVKVPNFVLLSNDESLAKKCRHL-KFPVIVKHLSGYASVGI--Q 127

Query: 145 KKDQSIPLDLLQS------SSWNHGDQLLIEQYVDGIELTCGVMGD-ASLDVTEIAVP-- 195
           K  +   LD L++        +NH    L+E+++ G E T     D  S    ++  P  
Sbjct: 128 KDSRCDTLDQLRTKVRGFIKEYNHA---LVEEFIRGREGTVLACADPGSPFGVKVFKPLM 184

Query: 196 ------KSDFYSYELKYS---SLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI-GCRGISR 245
                   DF  +E K++      +   L +  P   Y  +  +A  A + I    G  R
Sbjct: 185 FNFLQNNDDFAYFEKKWTMECGDQAYGFLASSDP--AYTAITDMARNAFKYIMSGVGYGR 242

Query: 246 SDFLFDPLSRKVFWLEINVQPGM 268
            DF  D L+ + ++LEIN   GM
Sbjct: 243 VDFRIDELTGEPYFLEINPNCGM 265


>gi|325916230|ref|ZP_08178511.1| SSU ribosomal protein S6P modification protein [Xanthomonas
           vesicatoria ATCC 35937]
 gi|325537524|gb|EGD09239.1| SSU ribosomal protein S6P modification protein [Xanthomonas
           vesicatoria ATCC 35937]
          Length = 291

 Score = 44.7 bits (104), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 48/211 (22%), Positives = 102/211 (48%), Gaps = 24/211 (11%)

Query: 70  AILELLEIPYTHSGILASAL--SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS-- 125
           A+L  LE   T++   + A+  S DK+R+ Q++++ G+ + P  +      D+Q L+S  
Sbjct: 75  AVLRQLEFMGTYTPNPSDAILRSRDKLRAHQLLAAQGIDM-PVTVFGDNPDDTQDLLSML 133

Query: 126 --PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV---DGIELTCG 180
             PP+V+K  +G    G+I+ +K  S    ++++    + +  ++++++   +G +L C 
Sbjct: 134 GPPPHVVKLNEGAQGAGVILTEK-ASASRGVVEALRGLYAN-FIVQEFIGEAEGADLRCF 191

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V+GD  +        + DF S         + H+       +  ++ Q++A  + +A+G 
Sbjct: 192 VVGDRVVAAMRRQAAEGDFRS---------NLHLGGTAAVAEATEQEQQVAVRSARALGL 242

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271
             ++  D +     R    LE+N  PG+  V
Sbjct: 243 -AVAGVDLIRS--KRGPLVLEVNSTPGLEGV 270


>gi|51574084|gb|AAU07976.1| VanA [Enterococcus faecalis]
          Length = 96

 Score = 44.7 bits (104), Expect = 0.015,   Method: Composition-based stats.
 Identities = 31/95 (32%), Positives = 52/95 (54%), Gaps = 8/95 (8%)

Query: 165 QLLIEQYVDGIELTCGVMGD-ASLDVTEIAVPKSDFYSY------ELKYSSLNSTHVLPA 217
           ++LIEQ V G E+ C V+G+ A+L V E+   +  +  +      E +  S N+   +PA
Sbjct: 1   KILIEQAVSGCEVGCAVLGNSAALVVGEVDQIRLQYGIFRIHQEVEPEKGSENAVITVPA 60

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSD-FLFD 251
            +  +    +Q  A   ++A+GCRG++R D FL D
Sbjct: 61  DLSAEERGRIQETAKKIYKALGCRGLARVDMFLQD 95


>gi|15606634|ref|NP_214014.1| biotin carboxylase [Aquifex aeolicus VF5]
 gi|2983860|gb|AAC07413.1| biotin carboxylase [Aquifex aeolicus VF5]
          Length = 477

 Score = 44.7 bits (104), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 40/184 (21%), Positives = 86/184 (46%), Gaps = 15/184 (8%)

Query: 92  DKMRSKQVVSSCGVPVCPSILVNRFTM-DSQHLISP---PYVIKPLKGGSSLGIIVIKKD 147
           DK+++K+V+   G+P  P       T+ D++H +     P ++K   GG   G+ VI+ +
Sbjct: 114 DKVKAKKVMKEVGLPTIPGTEEPVRTLEDAKHAVKEIGFPVMLKAAYGGGGRGMRVIRNE 173

Query: 148 QSIPLDLLQS-----SSWNHGDQLLIEQYVDGIE-LTCGVMGDASLDVTEIAVPKSDFYS 201
           + +  +   +     + +  GD L IE+YV+  + +   ++GD   ++  +        S
Sbjct: 174 EELEKNFESAFREAETFFGKGD-LFIEKYVENPKHIEVQILGDKYGNIIHLGERDC---S 229

Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
            + ++  L      P K+P D+  ++   A  A   +G       +FL D  + + +++E
Sbjct: 230 IQRRHQKLIEIAPSP-KLPQDLRMKILGNAVRAMTRVGYENAGTLEFLVDLKTGEYYFIE 288

Query: 262 INVQ 265
           +N +
Sbjct: 289 MNTR 292


>gi|255692931|ref|ZP_05416606.1| putative carbamoyl-phosphate synthase [Bacteroides finegoldii DSM
           17565]
 gi|260621242|gb|EEX44113.1| putative carbamoyl-phosphate synthase [Bacteroides finegoldii DSM
           17565]
          Length = 369

 Score = 44.7 bits (104), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 33/146 (22%), Positives = 72/146 (49%), Gaps = 14/146 (9%)

Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186
           P ++KP+ G  S G+  + K + +   L ++S  +  + +LIE+Y++G E++   +   S
Sbjct: 134 PVIVKPIDGSCSNGVTKVNKREDLTQALNRASQASLANCILIEEYIEGKEVSVESISFHS 193

Query: 187 ----LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC-R 241
               L +T+     + ++        + + H  P+ + LDI ++++        AIG   
Sbjct: 194 KHYVLTITDKETTGAPYF--------VETAHHQPSTLSLDIQEKLKYATCNILNAIGINN 245

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPG 267
           G S ++F  D  +  +F++E+  + G
Sbjct: 246 GASHTEFKIDQ-NGNIFFIEVGARGG 270


>gi|119946462|ref|YP_944142.1| carbamoyl-phosphate synthase L chain, ATP-binding [Psychromonas
            ingrahamii 37]
 gi|119865066|gb|ABM04543.1| Carbamoyl-phosphate synthase L chain, ATP-binding [Psychromonas
            ingrahamii 37]
          Length = 1520

 Score = 44.7 bits (104), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 42/192 (21%), Positives = 87/192 (45%), Gaps = 16/192 (8%)

Query: 85   LASALSM-DKMRSKQVVSSCGVPVCPS---ILVN-RFTMDSQHLISPPYVIKPLKGGSSL 139
            + S L+M +K  + +     GVPV P    IL      +D  + +  P ++K + GG   
Sbjct: 1054 MNSMLTMGNKSNAIKTAQDNGVPVVPGSHGILTGAEQALDIANAMGYPVLLKAVNGGGGK 1113

Query: 140  GIIVIKKDQSIPLDLLQ-----SSSWNHGDQLLIEQYVDGIE-LTCGVMGDASLDVTEIA 193
            GI+VI+K + +     Q      S++ +GD L +E+Y+  +  +   ++ D   +   + 
Sbjct: 1114 GILVIEKAEDMFAGFSQVSAEARSAFGNGD-LYLEKYITSLRHIEVQLLRDKHCNTKVLG 1172

Query: 194  VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
            +          K    + + +LPA + +++ K    LA     A+   G    +F++D  
Sbjct: 1173 IRDCSVQRNNQKVVEESESTMLPAHLEVEVLKHTAALA----DAVDYMGAGTVEFIYDLD 1228

Query: 254  SRKVFWLEINVQ 265
               ++++E+N +
Sbjct: 1229 QDSIYFMEMNTR 1240


>gi|220912174|ref|YP_002487483.1| carbamoyl-phosphate synthase L chain ATP-binding [Arthrobacter
           chlorophenolicus A6]
 gi|219859052|gb|ACL39394.1| Carbamoyl-phosphate synthase L chain ATP-binding [Arthrobacter
           chlorophenolicus A6]
          Length = 733

 Score = 44.7 bits (104), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 54/221 (24%), Positives = 91/221 (41%), Gaps = 17/221 (7%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
           +G   E+      L+   I +   G+ A  +  DK+RSK  V+  GVPV P   V R  M
Sbjct: 105 YGFLSENADFARALDAAGIAFMGPGVEALNIMGDKIRSKNHVAGYGVPVVPG--VARPGM 162

Query: 119 DSQHLISP------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ----SSSWNHGDQLLI 168
               LI        P +IKP  GG   G+ V++K   +P  L      ++S    D L +
Sbjct: 163 TDAELIEAAPAVGFPLLIKPSAGGGGKGMHVVEKPGDLPAVLATARRVAASAFGDDTLFL 222

Query: 169 EQYVDGIE-LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP--LDIYK 225
           E+ V     +   V+ D+  +V  +   +        K      + +L   +P   D+  
Sbjct: 223 ERLVTTPRHIEVQVLADSHGNVIHLGERECSLQRRHQKVIEEAPSPLLEG-LPHGADVRD 281

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLF-DPLSRKVFWLEINVQ 265
            +   A  A +++   G    +FL  D    + F++E+N +
Sbjct: 282 RIGEAACNAARSVNYTGAGTVEFLVSDDAPDEFFFMEMNTR 322


>gi|40253001|dbj|BAD05864.1| putative D-Ala-D-Ala ligase [Streptomyces garyphalus]
          Length = 81

 Score = 44.7 bits (104), Expect = 0.017,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 3/72 (4%)

Query: 219 IPLDIYKEVQRLAFLAHQAIGC--RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPE 276
           IP +    +Q+LA  AH+A+G      SR+DF  D     +  LE+N  PG+T  S+ P 
Sbjct: 1   IPEEFASRLQQLALRAHEALGFGPHTYSRADFRCDAAGEPM-CLEVNALPGLTATSLLPL 59

Query: 277 MAAYAGYSFREL 288
            A+ AG+++ +L
Sbjct: 60  GASGAGWTYADL 71


>gi|329905042|ref|ZP_08273977.1| Cyanophycin synthetase [Oxalobacteraceae bacterium IMCC9480]
 gi|327547778|gb|EGF32551.1| Cyanophycin synthetase [Oxalobacteraceae bacterium IMCC9480]
          Length = 831

 Score = 44.7 bits (104), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 48/182 (26%), Positives = 86/182 (47%), Gaps = 24/182 (13%)

Query: 22  CASALEDAGF-------KVSQIDVDRSVG-----LVLAHLKPDLAFNVLHGN----FGED 65
           C +AL D GF       ++ ++D D  +G     +V A +  ++ F  L       FG  
Sbjct: 96  CEAALNDTGFDLADALHQLRELDEDVRLGPSTGAIVEAAVARNIPFRRLTDGSLVLFGW- 154

Query: 66  GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF--TMDSQHL 123
           G  Q  ++  E+  T +  +A A++ DK  +K+++S+ GVPV     V+      ++   
Sbjct: 155 GSRQRRIQAAEMDSTSA--IAEAIAQDKDLTKKLLSAAGVPVPNGRAVSDVDDAWEAALE 212

Query: 124 ISPPYVIKPLKGGSSLGIIV-IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
           I  P V+KPL G    G+ V +   + +      +S +   D +L+E+Y+ G +    V+
Sbjct: 213 IGLPVVVKPLDGNQGKGVTVNVTSREQLAAAYATASEFR--DAILVERYLPGNDFRLLVV 270

Query: 183 GD 184
           GD
Sbjct: 271 GD 272


>gi|271967673|ref|YP_003341869.1| 3-methylcrotonoyl-CoA carboxylase subunit alpha [Streptosporangium
           roseum DSM 43021]
 gi|270510848|gb|ACZ89126.1| 3-methylcrotonoyl-CoA carboxylase, alpha subunit [Streptosporangium
           roseum DSM 43021]
          Length = 656

 Score = 44.7 bits (104), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 45/183 (24%), Positives = 81/183 (44%), Gaps = 16/183 (8%)

Query: 92  DKMRSKQVVSSCGVPVCPSILVNRFTM-DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150
           DK+R+K  VS+ GVPV P        +  +   +  P +IKP  GG   G+++++    +
Sbjct: 111 DKIRAKATVSAAGVPVVPGGAEPGDDLAAAAERVGFPALIKPSAGGGGKGMVLVRTAAEL 170

Query: 151 PLDLLQSSSWNH----GD-QLLIEQYVDG---IELTCGVMGDASLDVTEIAVPKSDFYSY 202
           P D L+S+        GD  LLIE++V+    IE+   VM D   +V  +   +      
Sbjct: 171 P-DALESARRTAAAAFGDATLLIERFVENPRHIEIQ--VMADTHGNVVHLGERECSLQRR 227

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
             K      + +L A         +   A  A +++G  G    +F+    +   +++E+
Sbjct: 228 HQKIIEEAPSPLLDAA----TRASMGAAAVEAARSVGYVGAGTVEFIVQGATGDYYFMEM 283

Query: 263 NVQ 265
           N +
Sbjct: 284 NTR 286


>gi|294665370|ref|ZP_06730660.1| ribosomal protein S6 modification protein [Xanthomonas fuscans
           subsp. aurantifolii str. ICPB 10535]
 gi|292604873|gb|EFF48234.1| ribosomal protein S6 modification protein [Xanthomonas fuscans
           subsp. aurantifolii str. ICPB 10535]
          Length = 255

 Score = 44.7 bits (104), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 48/211 (22%), Positives = 102/211 (48%), Gaps = 24/211 (11%)

Query: 70  AILELLEIPYTHSGILASAL--SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS-- 125
           A+L  LE   T++   + A+  S DK+R+ Q++++ G+ + P  +      D+Q L+S  
Sbjct: 35  AVLRQLEFMGTYTPNPSDAILRSRDKLRAHQLLAAQGIDM-PVTVFGDNPDDTQDLLSML 93

Query: 126 --PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV---DGIELTCG 180
             PP+V+K  +G    G+I+ +K  S    ++++    + +  ++++++   +G +L C 
Sbjct: 94  GPPPHVVKLNEGAQGAGVILTEK-ASASRGVVEALRGLYAN-FIVQEFIGEAEGADLRCF 151

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V+GD  +        + DF S         + H+       +  ++ Q +A  + +A+G 
Sbjct: 152 VVGDKVVAAMRRQAAEGDFRS---------NLHLGGTAAVAEATEQEQEVAVRSARALGL 202

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271
             ++  D +    +R    LE+N  PG+  V
Sbjct: 203 -AVAGVDLIRS--TRGPLVLEVNSTPGLEGV 230


>gi|291276719|ref|YP_003516491.1| putative ligase/carboxylase [Helicobacter mustelae 12198]
 gi|290963913|emb|CBG39750.1| putative ligase/carboxylase [Helicobacter mustelae 12198]
          Length = 415

 Score = 44.7 bits (104), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 66/275 (24%), Positives = 119/275 (43%), Gaps = 47/275 (17%)

Query: 3   VLMGGISSEREVSLSSGKACASAL-----EDAGFKVS-------QIDVDRSVGLVLA-HL 49
           VL+G     RE +L   +  + AL     ++A F  +       Q D + +  L+     
Sbjct: 8   VLLGANQYLRERALKGAREVSDALIFIADKNAKFNKNRYFDGALQADSNDAQSLIQCIQE 67

Query: 50  KPDLAFNVLHGNFGEDGLVQAILEL---LEIPYTHSGILASALSMDKMRSKQVVSSCGVP 106
           K  L F +L      D ++++  E+     +P+    ++ +A +  KM+ K      GVP
Sbjct: 68  KQSLGFKLLSVIPLNDWVLKSANEINAFFHLPHLSLEVIENARNKYKMKCK--FKEHGVP 125

Query: 107 VCPSILVNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIK--KDQSIPLDLLQS--SSW 160
             P  L+      ++   +I  P +IKP   G S G+ + +  K+ S  L L ++  + +
Sbjct: 126 SSPFFLLEHEEELAKAIEVIGFPMIIKPYDFGGSGGVYLARNPKEASEKLALSKAIIAQY 185

Query: 161 NH-----GDQLLIEQYVD-----GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLN 210
            +     GD+ LIE+Y+D      +E+ C      +L VTE  +    ++S         
Sbjct: 186 KNAFKIAGDKYLIEKYIDTQEEVSVEVLCFKDKCITLSVTEKYLSPKPYFS--------E 237

Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
             H++P+   LD     ++L  +AH A  C GI +
Sbjct: 238 MAHLVPSHRNLD-----KKLNEIAHNAALCLGIDK 267


>gi|83414173|dbj|BAE53877.1| D-alanine:D-alanine ligase [Streptococcus anginosus]
 gi|83415064|dbj|BAE53791.1| D-alanine:D-alanine ligase [Streptococcus constellatus subsp.
           pharyngis]
 gi|219564703|dbj|BAH03888.1| D-alanine:D-alanine ligase [Streptococcus anginosus]
          Length = 96

 Score = 44.7 bits (104), Expect = 0.018,   Method: Composition-based stats.
 Identities = 29/93 (31%), Positives = 50/93 (53%), Gaps = 4/93 (4%)

Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVL 215
           ++ +  ++LIEQ V+  E+  G++ +  +  +   E+ V    FY YE KY     T  +
Sbjct: 5   AFKYDSRVLIEQGVNAREIEVGLLENEGVKSSLPGEV-VKDVAFYDYEAKYIDNKITMDI 63

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           PAK+  D+   +++ A  A  AIG  G++R DF
Sbjct: 64  PAKLSEDVIATMRQYAEKAFHAIGGVGLARCDF 96


>gi|77166875|gb|ABA62412.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|77166885|gb|ABA62417.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|77166889|gb|ABA62419.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|77166891|gb|ABA62420.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|77166893|gb|ABA62421.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|77166895|gb|ABA62422.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|77166907|gb|ABA62428.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|77166909|gb|ABA62429.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|77166911|gb|ABA62430.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|77166913|gb|ABA62431.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|77166917|gb|ABA62433.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|77166921|gb|ABA62435.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|77166927|gb|ABA62438.1| D-alanine-D-alanine ligase [Clostridium perfringens]
          Length = 106

 Score = 44.7 bits (104), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 24/92 (26%), Positives = 48/92 (52%), Gaps = 2/92 (2%)

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
            +  +  +++IE+Y+ G E+TC ++    L V  I  PK  F+    KY    +   +  
Sbjct: 4   EALKYDTEVMIEEYIKGDEITCPIIDGKMLPVLAIK-PKGKFFDIASKYEDGGADEFI-V 61

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
           ++  D++KEV+++A   ++ + C   +R D L
Sbjct: 62  ELNEDLHKEVEKMALETYKLLKCDVYARVDML 93


>gi|77166903|gb|ABA62426.1| D-alanine-D-alanine ligase [Clostridium perfringens]
          Length = 106

 Score = 44.7 bits (104), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 24/92 (26%), Positives = 48/92 (52%), Gaps = 2/92 (2%)

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
            +  +  +++IE+Y+ G E+TC ++    L V  I  PK  F+    KY    +   +  
Sbjct: 4   EALKYDTEVMIEEYIKGDEITCPIIDGKMLPVLAIK-PKGKFFDIASKYEDGGADEFI-V 61

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
           ++  D++KEV+++A   ++ + C   +R D L
Sbjct: 62  ELNEDLHKEVEKMALETYKLLKCDVYARVDML 93


>gi|83772212|dbj|BAE62342.1| unnamed protein product [Aspergillus oryzae]
          Length = 524

 Score = 44.7 bits (104), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 41/180 (22%), Positives = 83/180 (46%), Gaps = 15/180 (8%)

Query: 92  DKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIKPLKGGSSLGIIVIK 145
           DK+++KQ+ + C VPV P++   R T D + +      +  P +IK + GG   GI +++
Sbjct: 119 DKLKAKQLATQCKVPVLPAM--PRSTSDLKEIRTFARQVGYPIMIKAVDGGGGRGIRLVR 176

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQ-YVDGI-ELTCGVMGDASLDVTEIAVPKSDFYSYE 203
           ++  +   +  +++ +    + +E+  VDG   +   V+GD  +DV  +           
Sbjct: 177 QEGELEHAVRAATNESPSQTVFVEKAAVDGFHHVEVQVVGDG-IDVCHLWERDCSLQRRF 235

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            K      + +   ++   +     R+A    +AI  R +   +FL     R+ ++LEIN
Sbjct: 236 QKVVEFAPSLMQNREVVEQVLNAALRMA----KAIRYRSLGTVEFLVHNHRREFYFLEIN 291


>gi|228949279|ref|ZP_04111543.1| hypothetical protein bthur0007_53960 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228810405|gb|EEM56762.1| hypothetical protein bthur0007_53960 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
          Length = 399

 Score = 44.3 bits (103), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 45/190 (23%), Positives = 89/190 (46%), Gaps = 31/190 (16%)

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP-----------LDLLQSSSWNHGDQLLI 168
            +++IS P V+KPL G  S+G   +KK +SI            +D +   ++N   ++L+
Sbjct: 129 QENIISFPCVVKPLSGFGSIG---VKKVESIDELNNIIKIHSLIDKVSLKNFNPKHKVLV 185

Query: 169 EQYVDGIELTCGVMGDASLDVTEIAVPKSDF---YSYELKYSSLNSTHVLPAKIPLDIYK 225
           E+Y+ G+E    ++      +T +   K      Y Y+ +Y       V P +   D+Y 
Sbjct: 186 EEYISGVEYAVDIIWQNRKPLTTVVTCKGVMKGPYFYDREY-----ILVSPKE---DLYT 237

Query: 226 EVQRLAFLAHQAIG-CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAG-Y 283
           E+++ A   ++ +G   G + ++  FD    +++ +E   +PG      F ++A  +  Y
Sbjct: 238 ELEKAAVRVNKCLGIINGATHTELKFD--KDQIYCIESTCRPG--AAGAFYKLAELSTEY 293

Query: 284 SFRELLLWMV 293
            F  LL + +
Sbjct: 294 RFFNLLYYTL 303


>gi|325928493|ref|ZP_08189684.1| SSU ribosomal protein S6P modification protein [Xanthomonas
           perforans 91-118]
 gi|325541210|gb|EGD12761.1| SSU ribosomal protein S6P modification protein [Xanthomonas
           perforans 91-118]
          Length = 305

 Score = 44.3 bits (103), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 48/211 (22%), Positives = 101/211 (47%), Gaps = 24/211 (11%)

Query: 70  AILELLEIPYTHSGILASAL--SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS-- 125
           A+L  LE   T++   + A+  S DK+R+ Q++++ G+ + P  +      D+Q L+S  
Sbjct: 85  AVLRQLEFMGTYTPNPSDAILRSRDKLRAHQLLAAQGIDM-PVTVFGDNPDDTQDLLSML 143

Query: 126 --PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV---DGIELTCG 180
             PP+V+K  +G    G+I+ +K  S    ++++    + +  ++++++   +G +L C 
Sbjct: 144 GPPPHVVKLNEGAQGAGVILTEK-ASASRGVVEALRGLYAN-FIVQEFIGEAEGADLRCF 201

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V+GD  +        + DF S         + H+       +  ++ Q +A  + +A+G 
Sbjct: 202 VVGDKVVAAMRRQAAEGDFRS---------NLHLGGTAAVAEATEQEQEVAVRSARALGL 252

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271
             ++  D +     R    LE+N  PG+  V
Sbjct: 253 -AVAGVDLIRS--KRGPLVLEVNSTPGLEGV 280


>gi|222522035|gb|ACM62792.1| D-ala-D-ala ligase-like protein [Streptococcus uberis]
 gi|222522053|gb|ACM62801.1| D-ala-D-ala ligase-like protein [Streptococcus uberis]
 gi|222522057|gb|ACM62803.1| D-ala-D-ala ligase-like protein [Streptococcus uberis]
          Length = 118

 Score = 44.3 bits (103), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 37/121 (30%), Positives = 61/121 (50%), Gaps = 8/121 (6%)

Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIP-LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
           P  +KP   GSS+GI    K +SI  L    + +  +  ++LIEQ V   E+  G++G+ 
Sbjct: 2   PIFVKPANMGSSVGI---SKAESIEGLREAIALALKYDSRILIEQGVVAREIEVGLLGNT 58

Query: 186 SLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
           ++  T   E+ +    FY Y+ KY     +  +PA I   I  +++  A  A +AIG  G
Sbjct: 59  NVASTLPGEV-IKDVAFYDYQAKYIDNKISMAIPATIDEGITSQMRYFAEQAFKAIGACG 117

Query: 243 I 243
           +
Sbjct: 118 L 118


>gi|84029433|sp|Q8PHK1|RIMK_XANAC RecName: Full=Ribosomal protein S6 modification protein
          Length = 295

 Score = 44.3 bits (103), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 48/211 (22%), Positives = 101/211 (47%), Gaps = 24/211 (11%)

Query: 70  AILELLEIPYTHSGILASAL--SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS-- 125
           A+L  LE   T++   + A+  S DK+R+ Q++++ G+ + P  +      D+Q L+S  
Sbjct: 75  AVLRQLEFMGTYTPNPSDAILRSRDKLRAHQLLAAQGIDM-PVTVFGDNPDDTQDLLSML 133

Query: 126 --PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV---DGIELTCG 180
             PP+V+K  +G    G+I+ +K  S    ++++    + +  ++++++   +G +L C 
Sbjct: 134 GPPPHVVKLNEGAQGAGVILTEK-ASASRGVVEALRGLYAN-FIVQEFIGEAEGADLRCF 191

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V+GD  +        + DF S         + H+       +  ++ Q +A  + +A+G 
Sbjct: 192 VVGDKVVAAMRRQAAEGDFRS---------NLHLGGTAAVAEATEQEQEVAVRSARALGL 242

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271
             ++  D +     R    LE+N  PG+  V
Sbjct: 243 -AVAGVDLIRS--RRGPLVLEVNSTPGLEGV 270


>gi|115384442|ref|XP_001208768.1| predicted protein [Aspergillus terreus NIH2624]
 gi|114196460|gb|EAU38160.1| predicted protein [Aspergillus terreus NIH2624]
          Length = 292

 Score = 44.3 bits (103), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 72/279 (25%), Positives = 118/279 (42%), Gaps = 49/279 (17%)

Query: 60  GNFGEDGLVQAILELLEIPYTH----SGI--LASALSMDKMRSKQ--VVSSCGVPVCPSI 111
           G+  +D  ++ I E L+    H     GI  L + L+    +     V+    +P  P +
Sbjct: 9   GDLADDTTIKGISEALQTLGHHVIHVPGIKPLVNHLASGDQKDWDLMVLKHHNIPTSPFL 68

Query: 112 LVNR------FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQ------SIPLDLLQSSS 159
           +V R      +T+    L  P +  KP+   +S GI    K Q      S+  DL   S 
Sbjct: 69  VVPRLGEPVDYTLLEDQLPYPLFA-KPVAASTSNGITASNKIQKKEKFRSVVEDL--RSQ 125

Query: 160 WNHGDQLLIEQYVDGIELTCGVMGDAS----LDVTEIA--VPKS--------DFYSYELK 205
           +   D +L+E ++ G E T G++G       L V+E+    PK         DF +   K
Sbjct: 126 FPEQD-VLVETFLAGREFTVGILGTGEDARVLGVSEVTWYNPKGGCDEDGCVDFATIFSK 184

Query: 206 YSS----LNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP--LSRKVF 258
                  +  THV L      D    V ++A  A++ +GCR   R D  F P       +
Sbjct: 185 SGGADKDMGHTHVELEGD---DQMARVSQVALDAYKGLGCRDAGRVDVRFGPDGDGSNPY 241

Query: 259 WLEINVQPGMTPV-SIFPEMAAYAGYSFRELLLWMVEDA 296
            +E+N   G+ P  S++  +A   G S+ +LL  ++E+A
Sbjct: 242 VIEVNPIFGLNPNHSLYTWIAKNNGLSYTDLLQNIIENA 280


>gi|77166923|gb|ABA62436.1| D-alanine-D-alanine ligase [Clostridium perfringens]
          Length = 106

 Score = 44.3 bits (103), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 24/92 (26%), Positives = 48/92 (52%), Gaps = 2/92 (2%)

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
            +  +  +++IE+Y+ G E+TC ++    L V  I  PK  F+    KY    +   +  
Sbjct: 4   EALKYDTEVMIEEYIKGDEITCPIIDGKMLPVLAIK-PKGKFFDIASKYGDGGADEFI-V 61

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
           ++  D++KEV+++A   ++ + C   +R D L
Sbjct: 62  ELNEDLHKEVEKMALETYKLLKCDVYARVDML 93


>gi|110598072|ref|ZP_01386351.1| conserved hypothetical protein, conserved [Chlorobium ferrooxidans
           DSM 13031]
 gi|110340331|gb|EAT58825.1| conserved hypothetical protein, conserved [Chlorobium ferrooxidans
           DSM 13031]
          Length = 489

 Score = 44.3 bits (103), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 53/233 (22%), Positives = 100/233 (42%), Gaps = 22/233 (9%)

Query: 52  DLAFNVLHGNFGED--GL-VQAILELLEIPYTHSGILASALSMDKMRS--KQVVSSCGV- 105
           DL  N+  G+F  D  G+ V   LE    P+T     AS+   D  R   K+V  S G+ 
Sbjct: 58  DLFINLCDGSFDSDCAGIEVVQTLEYFNAPFTG----ASSDFYDPTREDMKRVARSFGID 113

Query: 106 -PVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW-NHG 163
            P+   ++      ++   +  P ++K     +S+G+    + ++     +++       
Sbjct: 114 TPLHRFVVTEADIKEAAENLRFPLIVKHPNSYASIGMTKTSRTETPEAFKVEAERIVREF 173

Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD--------FYSYELKYSSLNSTHVL 215
            + L+E++V+G E T  V  +A      +A P  +        F  ++LK+S     + +
Sbjct: 174 GEALVEEFVEGREFTVLVAENAEDAANPVAFPAVEFVFPEGESFKHFDLKWSDYEDMNCI 233

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268
           P + P D+ + ++ ++      +   G  R D   D   R +F LEIN   G+
Sbjct: 234 PVEDP-DLDRRLRTISAQLFTGLNGSGYGRCDIRMDGEGR-LFMLEINPNCGV 284


>gi|315105144|gb|EFT77120.1| conserved domain protein [Propionibacterium acnes HL050PA2]
          Length = 123

 Score = 44.3 bits (103), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 44/103 (42%), Gaps = 1/103 (0%)

Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
           P    Y Y   Y+   +    PA I     +    +A +  + +   GISR D + D   
Sbjct: 18  PVGGVYDYSAMYTGGETRLTAPADISGTAAQTATAMARVVQKELDFSGISRVDAIVDESG 77

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           R VF LE    PGMT +S+ P     AG    E+   +V+D +
Sbjct: 78  RPVF-LEAGAAPGMTAISLVPVAMKAAGLDLGEVCSRLVDDVA 119


>gi|327405075|ref|YP_004345913.1| 30S ribosomal protein S6P modification protein [Fluviicola
           taffensis DSM 16823]
 gi|327320583|gb|AEA45075.1| SSU ribosomal protein S6P modification protein [Fluviicola
           taffensis DSM 16823]
          Length = 292

 Score = 44.3 bits (103), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 43/189 (22%), Positives = 92/189 (48%), Gaps = 22/189 (11%)

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIK 145
           S DK+R  QV+S  G+ +  ++  N ++ + +H++S     P V+K L+G   LG +V+ 
Sbjct: 97  SRDKLRCLQVLSKEGIGLPKTVFTN-YSRNVEHVVSSAGGAPVVLKLLEGTQGLG-VVLA 154

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVD---GIELTCGVMGDASLDVTEIAVPKSDFYSY 202
           ++Q+    +L++ +     ++++++++    G ++   V+    +   +    + +F S 
Sbjct: 155 ENQNAAQSVLEAFNGLKA-RVIVQEFIKEAGGADIRAFVVDGEVVGAMKRQGKEGEFRS- 212

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
                   + H       L + +E +R A  A +A+G  G++  D L    SR    LE+
Sbjct: 213 --------NLHRGGTATILQLTEEEKRTAIKAAEAVGL-GVAGVDLLQS--SRGPLVLEV 261

Query: 263 NVQPGMTPV 271
           N  PG+  +
Sbjct: 262 NSSPGLEGI 270


>gi|77166883|gb|ABA62416.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|313192181|emb|CBX19950.1| D alanine-D alanine ligase [Clostridium perfringens]
          Length = 106

 Score = 44.3 bits (103), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 24/92 (26%), Positives = 48/92 (52%), Gaps = 2/92 (2%)

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
            +  +  +++IE+Y+ G E+TC ++    L V  I  PK  F+    KY    +   +  
Sbjct: 4   EALKYDTEVMIEEYIKGDEITCPIIDGKMLPVLAIK-PKGKFFDIASKYEDGGADEFI-V 61

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
           K+  +++KEV+++A   ++ + C   +R D L
Sbjct: 62  KLNENLHKEVEKMALETYKLLKCDVYARVDML 93


>gi|29831820|ref|NP_826454.1| acetyl/propionyl CoA carboxylase alpha subunit [Streptomyces
           avermitilis MA-4680]
 gi|29608937|dbj|BAC72989.1| putative acetyl/propionyl CoA carboxylase alpha subunit
           [Streptomyces avermitilis MA-4680]
          Length = 700

 Score = 44.3 bits (103), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 54/101 (53%), Gaps = 10/101 (9%)

Query: 83  GILASALSM--DKMRSKQVVSSCGVPVCP----SILVNRFTMDSQHLISPPYVIKPLKGG 136
           G  A A+S+  DK+R+K+ V + GVPV P    S L +   +D+   I  P ++KP  GG
Sbjct: 104 GPPADAISLMGDKIRAKETVQAVGVPVVPGSSGSGLTDAQLVDAAREIGMPVLLKPSAGG 163

Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHG----DQLLIEQYVD 173
              G+ +++ ++ +  ++  +          D LL+E++VD
Sbjct: 164 GGKGMRLVRDERLLADEIAAARREARASFGDDTLLVERWVD 204


>gi|83414161|dbj|BAE53871.1| D-alanine:D-alanine ligase [Streptococcus cristatus]
          Length = 96

 Score = 44.3 bits (103), Expect = 0.022,   Method: Composition-based stats.
 Identities = 29/93 (31%), Positives = 51/93 (54%), Gaps = 4/93 (4%)

Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVL 215
           ++ +  ++L+EQ V+  E+  G++G+  +  T   E+ V    FY YE KY     T  +
Sbjct: 5   AFKYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVAFYDYEAKYIDNKITMDI 63

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           PAKI  +    ++  A  A +A+G +G++R DF
Sbjct: 64  PAKISDEAISIMRTNAETAFRALGGQGLARCDF 96


>gi|78048923|ref|YP_365098.1| ribosomal protein S6 modification protein [Xanthomonas campestris
           pv. vesicatoria str. 85-10]
 gi|84029434|sp|Q3BQ65|RIMK_XANC5 RecName: Full=Ribosomal protein S6 modification protein
 gi|78037353|emb|CAJ25098.1| ribosomal protein S6 modification protein [Xanthomonas campestris
           pv. vesicatoria str. 85-10]
          Length = 295

 Score = 44.3 bits (103), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 48/211 (22%), Positives = 101/211 (47%), Gaps = 24/211 (11%)

Query: 70  AILELLEIPYTHSGILASAL--SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS-- 125
           A+L  LE   T++   + A+  S DK+R+ Q++++ G+ + P  +      D+Q L+S  
Sbjct: 75  AVLRQLEFMGTYTPNPSDAILRSRDKLRAHQLLAAQGIDM-PVTVFGDNPDDTQDLLSML 133

Query: 126 --PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV---DGIELTCG 180
             PP+V+K  +G    G+I+ +K  S    ++++    + +  ++++++   +G +L C 
Sbjct: 134 GPPPHVVKLNEGAQGAGVILTEK-ASASRGVVEALRGLYAN-FIVQEFIGEAEGADLRCF 191

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V+GD  +        + DF S         + H+       +  ++ Q +A  + +A+G 
Sbjct: 192 VVGDKVVAAMRRQAAEGDFRS---------NLHLGGTAAVTEATEQEQEVAVRSARALGL 242

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271
             ++  D +     R    LE+N  PG+  V
Sbjct: 243 T-VAGVDLIRS--KRGPLVLEVNSTPGLEGV 270


>gi|238495280|ref|XP_002378876.1| pyruvate carboxylase, putative [Aspergillus flavus NRRL3357]
 gi|220695526|gb|EED51869.1| pyruvate carboxylase, putative [Aspergillus flavus NRRL3357]
          Length = 646

 Score = 43.9 bits (102), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 41/180 (22%), Positives = 83/180 (46%), Gaps = 15/180 (8%)

Query: 92  DKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIKPLKGGSSLGIIVIK 145
           DK+++KQ+ + C VPV P++   R T D + +      +  P +IK + GG   GI +++
Sbjct: 118 DKLKAKQLATQCKVPVLPAM--PRSTSDLKEIRTFARQVGYPIMIKAVDGGGGRGIRLVR 175

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQ-YVDGI-ELTCGVMGDASLDVTEIAVPKSDFYSYE 203
           ++  +   +  +++ +    + +E+  VDG   +   V+GD  +DV  +           
Sbjct: 176 QEGELEHAVRAATNESPSQTVFVEKAAVDGFHHVEVQVVGDG-IDVCHLWERDCSLQRRF 234

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            K      + +   ++   +     R+A    +AI  R +   +FL     R+ ++LEIN
Sbjct: 235 QKVVEFAPSLMQNREVVEQVLNAALRMA----KAIRYRSLGTVEFLVHNHRREFYFLEIN 290


>gi|290960184|ref|YP_003491366.1| acetyl/propionyl CoA carboxylase subunit alpha [Streptomyces
           scabiei 87.22]
 gi|260649710|emb|CBG72825.1| acetyl/propionyl CoA carboxylase alpha subunit [Streptomyces
           scabiei 87.22]
          Length = 689

 Score = 43.9 bits (102), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 52/101 (51%), Gaps = 10/101 (9%)

Query: 83  GILASALSM--DKMRSKQVVSSCGVPVCP----SILVNRFTMDSQHLISPPYVIKPLKGG 136
           G  A A+S+  DK+R+K+ V + GVPV P    S L +    D+ H I  P ++KP  GG
Sbjct: 106 GPPADAISLMGDKIRAKETVRAAGVPVVPGSSGSGLTDGELADAAHEIGMPVLLKPSAGG 165

Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHG----DQLLIEQYVD 173
              G+ +++    +  ++  +          D LL+E+++D
Sbjct: 166 GGKGMRLVRDAGQLAEEIAAARREARASFGDDTLLVERWID 206


>gi|291439490|ref|ZP_06578880.1| acetyl/propionyl CoA carboxylase alpha subunit [Streptomyces
           ghanaensis ATCC 14672]
 gi|291342385|gb|EFE69341.1| acetyl/propionyl CoA carboxylase alpha subunit [Streptomyces
           ghanaensis ATCC 14672]
          Length = 656

 Score = 43.9 bits (102), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 49/96 (51%), Gaps = 8/96 (8%)

Query: 86  ASALSMDKMRSKQVVSSCGVPVCP----SILVNRFTMDSQHLISPPYVIKPLKGGSSLGI 141
           A AL  DK+R+K+ V + GVPV P    S L +    D+   I  P ++KP  GG   G+
Sbjct: 119 AIALMGDKIRAKETVRAAGVPVVPGSSGSGLSDAQLADAARGIGMPVLLKPSAGGGGKGM 178

Query: 142 IVIKKDQSIPLDLLQSSSWNHG----DQLLIEQYVD 173
            +++   ++  +L  +          D LL+E+++D
Sbjct: 179 RLVRDASALADELAAARREARASFGDDTLLVERWID 214


>gi|226940887|ref|YP_002795961.1| Cyanophycin synthetase [Laribacter hongkongensis HLHK9]
 gi|226715814|gb|ACO74952.1| Cyanophycin synthetase [Laribacter hongkongensis HLHK9]
          Length = 710

 Score = 43.9 bits (102), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 47/190 (24%), Positives = 81/190 (42%), Gaps = 22/190 (11%)

Query: 12  REVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH-LKPDLA-------------FNV 57
           RE   ++ +   +A+ED  F V+   V R   +V  H L P  A               +
Sbjct: 124 REALFAARELVLAAMEDRPFDVAAT-VQRLRDMVDDHCLGPSTASIVDAADDRDIPYIRL 182

Query: 58  LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117
             GN  + G  +A+  +       +  +A  +S DK  +KQ++S+CGVPV     V    
Sbjct: 183 NSGNLVQFGYGRALRRIWTAETDQTSAIAEGISRDKDLTKQLLSACGVPVPEGRYVKNAE 242

Query: 118 MDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS--SWNHGDQLLIEQYVD 173
              +    I  P V+KP  G    G+      +    +++Q+   +   G  +++E++V 
Sbjct: 243 EAWEAAEDIGLPVVVKPYDGNHGRGVFTNLHTRD---EVMQAYGVAIEEGSGVIVERFVT 299

Query: 174 GIELTCGVMG 183
           GIE    V+G
Sbjct: 300 GIEHRLLVVG 309


>gi|149908009|ref|ZP_01896677.1| D-alanylalanine synthetase [Moritella sp. PE36]
 gi|149809015|gb|EDM68946.1| D-alanylalanine synthetase [Moritella sp. PE36]
          Length = 384

 Score = 43.9 bits (102), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 67/308 (21%), Positives = 127/308 (41%), Gaps = 44/308 (14%)

Query: 23  ASALEDAGFKVSQIDV---DRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ--AILELLEI 77
           A AL ++GF+   IDV   +  +   L  L  DL      G  G D +    ++LE+L +
Sbjct: 55  ADALRESGFQ--HIDVLPENMDLPQRLKALNIDLVITNSGGLQGFDSMCHLPSMLEMLGV 112

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL----------VNRFTMDS-QHLISP 126
           PY     + + L  +K   K  + + G+P  P I           VN+  +D        
Sbjct: 113 PYVGHSPMTAGLLDNKHLFKHEIKAAGIPTAPFITVGLGECITDAVNKEALDQIDADFGG 172

Query: 127 PYVIKPLKGGSSLGI--IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
            +++KP+ G +S+ +  +  + D +  + ++Q+++ N    ++IE Y+ G E    V G 
Sbjct: 173 RFIVKPVSGRASIHVYPVFDRADLAGKVKIVQAATNN---IVMIEPYLSGREFVVAVAGS 229

Query: 185 A--------------SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
                          +  VTE  +   +     +    + S  +L    P ++ + +  L
Sbjct: 230 VIFKNDKLNQLDSPFAFSVTERVLADDEPIFTSMDVKPITSDRLLKVDEP-ELRQSLIDL 288

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT-----PVSIFPEMAAYAGYSF 285
               +Q +G   + R D   D    K++ LE N +P +       +SI        G S+
Sbjct: 289 GNKIYQQLGLGTLVRVDLRMD-CKGKLYVLEANPKPDLKRPEGDKLSIVCHDIHNEGMSY 347

Query: 286 RELLLWMV 293
           ++L+  +V
Sbjct: 348 QDLIQSLV 355


>gi|193872892|gb|ACF23136.1| D-alanine-D-alanine ligase [Streptococcus mitis]
          Length = 96

 Score = 43.9 bits (102), Expect = 0.027,   Method: Composition-based stats.
 Identities = 30/93 (32%), Positives = 50/93 (53%), Gaps = 4/93 (4%)

Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVL 215
           ++ +  ++L+EQ V   E+  G++G+  +  T   E+ V    FY Y+ KY     T  +
Sbjct: 5   AFQYDSRVLVEQGVIAREIEVGLLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDI 63

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           PA I  D+   +++ A  A +AIG  G+SR DF
Sbjct: 64  PANISDDVIAVMRQNAETAFRAIGGLGLSRCDF 96


>gi|153813211|ref|ZP_01965879.1| hypothetical protein RUMOBE_03627 [Ruminococcus obeum ATCC 29174]
 gi|149830742|gb|EDM85833.1| hypothetical protein RUMOBE_03627 [Ruminococcus obeum ATCC 29174]
          Length = 343

 Score = 43.9 bits (102), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 34/127 (26%), Positives = 61/127 (48%), Gaps = 8/127 (6%)

Query: 92  DKMRSKQVVSSCGVPV-----CPSILVNRFTM-DSQHLISPPYVIKPLKGGSSLGIIVIK 145
           DK   ++++S  G+P       P+   N + + +    +  P + KPL    S GI +IK
Sbjct: 24  DKSACRELLSKLGLPTPGFVKVPAAEQNEYKLAEITAGLKYPLISKPLDKYGSRGIFIIK 83

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV-MGDASLDVTEIA-VPKSDFYSYE 203
             + +   + +++ +   D++LIE+Y DG E      + D ++ V  IA   K+ F   E
Sbjct: 84  DQEQLAGSVRKTAEFTDLDEILIEEYNDGFEFNMMTWVSDGAVRVISIADREKTQFAEGE 143

Query: 204 LKYSSLN 210
           L  S+ N
Sbjct: 144 LPESTRN 150


>gi|91774016|ref|YP_566708.1| hypothetical protein Mbur_2084 [Methanococcoides burtonii DSM 6242]
 gi|91713031|gb|ABE52958.1| ATP-binding protein with DUF201 domain, pyrrolysine biosynthesis
           [Methanococcoides burtonii DSM 6242]
          Length = 362

 Score = 43.9 bits (102), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 47/195 (24%), Positives = 83/195 (42%), Gaps = 44/195 (22%)

Query: 86  ASALSMDKMRSKQVVSSCGVPVC---PSILVNRFTMDSQHLISPPYVIKPLKGGSSLGII 142
           A  +SMDK RSK+  +S  +P     PS               PPY +KP    SS+G  
Sbjct: 97  AYHISMDKKRSKEYFTSIDIPTPGDRPS--------------QPPYFVKPPCESSSIGTH 142

Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS--LDVTEIAVPKSDFY 200
           +I  D  +          + G  +L+E+Y++G  ++  V+GD      V E  V   D Y
Sbjct: 143 IIYDDSELA---------DVGPNMLVEEYLEGNVISLEVIGDGKHFAVVKETKVHIDDTY 193

Query: 201 SYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260
                       H++    P++   + + +++   Q +  +GI   + +      K+  L
Sbjct: 194 ----------DCHMI---TPVEHDPKFREISYRLAQGLNLKGIMDVEAIVSEKGLKI--L 238

Query: 261 EINVQ-PGMTPVSIF 274
           EI+ + P  TP+ ++
Sbjct: 239 EIDARFPSQTPIVVY 253


>gi|222522041|gb|ACM62795.1| D-ala-D-ala ligase-like protein [Streptococcus uberis]
 gi|222522051|gb|ACM62800.1| D-ala-D-ala ligase-like protein [Streptococcus uberis]
 gi|222522063|gb|ACM62806.1| D-ala-D-ala ligase-like protein [Streptococcus uberis]
          Length = 118

 Score = 43.9 bits (102), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 37/121 (30%), Positives = 60/121 (49%), Gaps = 8/121 (6%)

Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIP-LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
           P  +KP   GSS+GI    K +SI  L    + +  +  ++LIEQ V   E+  G++G+ 
Sbjct: 2   PIFVKPANMGSSVGI---SKAESIEGLREAIALALKYDSRILIEQGVVAREIEVGLLGNT 58

Query: 186 SLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            +  T   E+ +    FY Y+ KY     +  +PA I   I  +++  A  A +AIG  G
Sbjct: 59  KVASTLPGEV-IKDVAFYDYQAKYIDNKISMAIPAAIDEGITSQMRYFAEQAFKAIGACG 117

Query: 243 I 243
           +
Sbjct: 118 L 118


>gi|302545216|ref|ZP_07297558.1| LOW QUALITY PROTEIN: acetyl/propionyl-CoA carboxylase, alpha
           subunit [Streptomyces hygroscopicus ATCC 53653]
 gi|302462834|gb|EFL25927.1| LOW QUALITY PROTEIN: acetyl/propionyl-CoA carboxylase, alpha
           subunit [Streptomyces himastatinicus ATCC 53653]
          Length = 528

 Score = 43.9 bits (102), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 50/91 (54%), Gaps = 10/91 (10%)

Query: 92  DKMRSKQVVSSCGVPVCP----SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147
           DK+R+K+ V + GVPV P    S L +   +D+   I  P ++KP  GG   G+ ++ +D
Sbjct: 124 DKIRAKETVRAAGVPVVPGSSGSGLTDAQLIDAAREIGTPVLLKPSAGGGGKGMRLV-RD 182

Query: 148 QSIPLDLLQSSSWNHG-----DQLLIEQYVD 173
           +++  D + ++          D LL+E+++D
Sbjct: 183 EALLADEIAAARREARGAFGDDTLLVERWID 213


>gi|239931121|ref|ZP_04688074.1| acetyl/propionyl CoA carboxylase alpha subunit [Streptomyces
           ghanaensis ATCC 14672]
          Length = 646

 Score = 43.9 bits (102), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 49/96 (51%), Gaps = 8/96 (8%)

Query: 86  ASALSMDKMRSKQVVSSCGVPVCP----SILVNRFTMDSQHLISPPYVIKPLKGGSSLGI 141
           A AL  DK+R+K+ V + GVPV P    S L +    D+   I  P ++KP  GG   G+
Sbjct: 109 AIALMGDKIRAKETVRAAGVPVVPGSSGSGLSDAQLADAARGIGMPVLLKPSAGGGGKGM 168

Query: 142 IVIKKDQSIPLDLLQSSSWNHG----DQLLIEQYVD 173
            +++   ++  +L  +          D LL+E+++D
Sbjct: 169 RLVRDASALADELAAARREARASFGDDTLLVERWID 204


>gi|222522029|gb|ACM62789.1| D-ala-D-ala ligase-like protein [Streptococcus uberis]
 gi|222522031|gb|ACM62790.1| D-ala-D-ala ligase-like protein [Streptococcus uberis]
 gi|222522033|gb|ACM62791.1| D-ala-D-ala ligase-like protein [Streptococcus uberis]
 gi|222522037|gb|ACM62793.1| D-ala-D-ala ligase-like protein [Streptococcus uberis]
 gi|222522039|gb|ACM62794.1| D-ala-D-ala ligase-like protein [Streptococcus uberis]
 gi|222522043|gb|ACM62796.1| D-ala-D-ala ligase-like protein [Streptococcus uberis]
 gi|222522045|gb|ACM62797.1| D-ala-D-ala ligase-like protein [Streptococcus uberis]
 gi|222522047|gb|ACM62798.1| D-ala-D-ala ligase-like protein [Streptococcus uberis]
 gi|222522049|gb|ACM62799.1| D-ala-D-ala ligase-like protein [Streptococcus uberis]
 gi|222522055|gb|ACM62802.1| D-ala-D-ala ligase-like protein [Streptococcus uberis]
 gi|222522059|gb|ACM62804.1| D-ala-D-ala ligase-like protein [Streptococcus uberis]
 gi|222522061|gb|ACM62805.1| D-ala-D-ala ligase-like protein [Streptococcus uberis]
 gi|222522067|gb|ACM62808.1| D-ala-D-ala ligase-like protein [Streptococcus uberis]
 gi|222522069|gb|ACM62809.1| D-ala-D-ala ligase-like protein [Streptococcus uberis]
          Length = 118

 Score = 43.9 bits (102), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 37/121 (30%), Positives = 60/121 (49%), Gaps = 8/121 (6%)

Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIP-LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
           P  +KP   GSS+GI    K +SI  L    + +  +  ++LIEQ V   E+  G++G+ 
Sbjct: 2   PIFVKPANMGSSVGI---SKAESIEGLREAIALALKYDSRILIEQGVVAREIEVGLLGNT 58

Query: 186 SLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            +  T   E+ +    FY Y+ KY     +  +PA I   I  +++  A  A +AIG  G
Sbjct: 59  KVASTLPGEV-IKDVAFYDYQAKYIDNKISMAIPATIDEGITSQMRYFAEQAFKAIGACG 117

Query: 243 I 243
           +
Sbjct: 118 L 118


>gi|187477731|ref|YP_785755.1| cyanophycin synthetase [Bordetella avium 197N]
 gi|115422317|emb|CAJ48841.1| cyanophycin synthetase [Bordetella avium 197N]
          Length = 870

 Score = 43.9 bits (102), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 76/176 (43%), Gaps = 16/176 (9%)

Query: 24  SALEDAGFKVSQI--DVDRSVG----------LVLAHLKPDLAFNVL-HGNFGEDGLVQA 70
           +A+ED  F V+Q   D+ R V           +V A    D+A+  L  GN  + G    
Sbjct: 138 AAIEDRDFDVAQTVADLRRLVDRHCLGPSTACIVDAADDRDIAYTRLFEGNLVQFGYGAR 197

Query: 71  ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPY 128
              +       +  +A  +S DK  +K ++ +CGVPV    LV+       +   I  P 
Sbjct: 198 QRRIWTAETDRTSAIAEGISRDKDLTKSILETCGVPVPEGHLVDSVEQAWAAAERIGLPV 257

Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
           VIKP  G    G+      +   ++   + + + G  +++E++V G E    V+GD
Sbjct: 258 VIKPYDGNHGRGVFTNLSTRE-EVESAYAVAVDEGSGVIVERFVPGNEHRLLVVGD 312


>gi|226507364|ref|NP_001147055.1| methylcrotonoyl-CoA carboxylase subunit alpha [Zea mays]
 gi|195606940|gb|ACG25300.1| methylcrotonoyl-CoA carboxylase subunit alpha [Zea mays]
          Length = 751

 Score = 43.9 bits (102), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 49/190 (25%), Positives = 85/190 (44%), Gaps = 27/190 (14%)

Query: 92  DKMRSKQVVSSCGVPVCPSIL-----VNRFTMDSQHLISPPYVIKPLKGGSSLGI-IVIK 145
           DK  SK+++ + GVP+ P        V    +++   I  P +IKP  GG   G+ IV +
Sbjct: 167 DKSASKRIMGAAGVPLVPGYHGADQDVELLKLEADK-IGYPVLIKPTHGGGGKGMRIVER 225

Query: 146 KDQSIP--LDLLQSSSWNHG-DQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYS 201
            D+ +   L   + ++ + G + LLIE+Y+     +   V GD   +           Y 
Sbjct: 226 PDEFVDSVLSAQREAAASFGVNTLLIEKYITQPRHVEVQVFGDQHGNA---------IYL 276

Query: 202 YELKYSSLNSTHV-----LPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255
           YE +  SL   H       PA  +P +    +   A  A +A+G       +F+ D LS 
Sbjct: 277 YE-RDCSLQRRHQKIIEEAPAPNVPAEFRSHIGGAAVSAAKAVGYYNAGTVEFIVDTLSG 335

Query: 256 KVFWLEINVQ 265
           + +++E+N +
Sbjct: 336 EFYFMEMNTR 345


>gi|157383858|gb|ABV49320.1| D-ala-D-ala ligase-like protein [Streptococcus uberis]
          Length = 118

 Score = 43.9 bits (102), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 37/121 (30%), Positives = 60/121 (49%), Gaps = 8/121 (6%)

Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIP-LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
           P  +KP   GSS+GI    K +SI  L    + +  +  ++LIEQ V   E+  G++G+ 
Sbjct: 2   PIFVKPANMGSSVGI---SKAESIEGLREAIALALKYDSRILIEQGVVAREIEVGLLGNT 58

Query: 186 SLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            +  T   E+ +    FY Y+ KY     +  +PA I   I  +++  A  A +AIG  G
Sbjct: 59  KVASTLPGEV-IKDVAFYDYQAKYIDNKISMAIPATIDEGISSQMRYFAEQAFKAIGACG 117

Query: 243 I 243
           +
Sbjct: 118 L 118


>gi|297199865|ref|ZP_06917262.1| acetyl-CoA carboxylase, biotin carboxylase [Streptomyces sviceus
           ATCC 29083]
 gi|197710330|gb|EDY54364.1| acetyl-CoA carboxylase, biotin carboxylase [Streptomyces sviceus
           ATCC 29083]
          Length = 637

 Score = 43.9 bits (102), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 48/92 (52%), Gaps = 5/92 (5%)

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145
           A AL  DK+R+K+ V + GVPV P        +++   +  P ++KP  GG   G+ +++
Sbjct: 109 AIALMGDKIRAKETVEAAGVPVVPGGRDPEL-VEAARALGAPVLLKPSAGGGGKGMRLVR 167

Query: 146 K----DQSIPLDLLQSSSWNHGDQLLIEQYVD 173
                ++ I     ++ +    D LL+E++VD
Sbjct: 168 DLTVLEEEIAAARREARTSFGDDTLLVERWVD 199


>gi|255940068|ref|XP_002560803.1| Pc16g04520 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211585426|emb|CAP93122.1| Pc16g04520 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 633

 Score = 43.9 bits (102), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 54/101 (53%), Gaps = 7/101 (6%)

Query: 88  ALSMDKMRSKQVVSS--CGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145
            L  +K +++Q+ ++  C +   P  L N  + D   L + P +IKP KG  S G+  + 
Sbjct: 276 GLVQNKFKARQLDTNDFCRLVRSPEDLENMLSKDGPQL-AYPLIIKPAKGWCSEGVWKVA 334

Query: 146 KDQSI--PLDLLQSSSWN--HGDQLLIEQYVDGIELTCGVM 182
            +Q +   + LL   S+   HG++++IE YV+G E+   ++
Sbjct: 335 NEQELLEKVHLLWRESFTAWHGNEVVIETYVEGPEIDANIV 375


>gi|328882613|emb|CCA55852.1| Methylcrotonyl-CoA carboxylase subunit [Streptomyces venezuelae
           ATCC 10712]
          Length = 647

 Score = 43.9 bits (102), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 29/97 (29%), Positives = 50/97 (51%), Gaps = 7/97 (7%)

Query: 83  GILASALSM--DKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLG 140
           G  ASA+S+  DK+R+K+ V + GVPV P          ++ L + P ++KP  GG   G
Sbjct: 110 GPPASAISLMGDKIRAKETVQAAGVPVVPGAADPELEAAARELGA-PVLLKPSAGGGGKG 168

Query: 141 IIVIKK----DQSIPLDLLQSSSWNHGDQLLIEQYVD 173
           + +++        I     ++ S    D LL+E+++D
Sbjct: 169 MRLVRDLSTLSDEIAAARREARSSFGDDTLLVERWID 205


>gi|170077261|ref|YP_001733899.1| hypothetical protein SYNPCC7002_A0638 [Synechococcus sp. PCC 7002]
 gi|169884930|gb|ACA98643.1| hypothetical protein SYNPCC7002_A0638 [Synechococcus sp. PCC 7002]
          Length = 384

 Score = 43.9 bits (102), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 46/175 (26%), Positives = 78/175 (44%), Gaps = 15/175 (8%)

Query: 23  ASALEDAGFK-VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ--AILELLEIPY 79
           A+ALED GF+ V  +  D ++G  L   +  LA+    G  G + +    AILE+L +PY
Sbjct: 59  AAALEDLGFQHVFVLPDDATLGDRLRKHQIHLAWLNTGGVQGYNPVCHTPAILEMLGVPY 118

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVN----RFTMDSQHLISPP-------Y 128
                L S++  +K   K+ +   G P  P ++ +    +FT                 +
Sbjct: 119 IGHNPLNSSILDNKHSFKRELQGLGFPTAPFMIWHPAQGKFTAKDNARFQQTFGDYQGSF 178

Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           ++KP+ G +SL I  + + Q +   +       H +  LIE ++ G E    V G
Sbjct: 179 LVKPVSGRASLNIHFVDQPQDLGEAIANIHQQTH-NTALIEPFLTGREFCVSVCG 232


>gi|302532420|ref|ZP_07284762.1| phosphoribosylglycinamide formyltransferase 2 [Streptomyces sp. C]
 gi|302441315|gb|EFL13131.1| phosphoribosylglycinamide formyltransferase 2 [Streptomyces sp. C]
          Length = 434

 Score = 43.5 bits (101), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 40/176 (22%), Positives = 76/176 (43%), Gaps = 8/176 (4%)

Query: 68  VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP- 126
           V  I E + +P+T +   A+  +  K R +QV+++ GV      +V  F   +       
Sbjct: 111 VARIAEEIGVPFTDAA--AAETAKQKDRCRQVLAAAGVDTTRYAVVGGFEEAAAFAAGGG 168

Query: 127 -PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            P V+KP +G  S G  V+  ++ +   L  +    +   +L+E+Y+ G       +G  
Sbjct: 169 YPVVVKPARGSGSEGAHVVADEEQLAGVLAGAPDGAYAAGILVEEYLSG-RFVSAEIGLV 227

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241
                 +AV +   +    ++ +L +   +PA I  + +  V R A     A+G R
Sbjct: 228 HGRFLRLAVSERSTWH---RHEALETGTTIPAGISAEEHDRVMRFAEEVVGAVGLR 280


>gi|314965741|gb|EFT09840.1| conserved domain protein [Propionibacterium acnes HL082PA2]
 gi|314982883|gb|EFT26975.1| conserved domain protein [Propionibacterium acnes HL110PA3]
 gi|315091192|gb|EFT63168.1| conserved domain protein [Propionibacterium acnes HL110PA4]
 gi|315094423|gb|EFT66399.1| conserved domain protein [Propionibacterium acnes HL060PA1]
 gi|327328919|gb|EGE70679.1| D-alanine--D-alanine ligase B [Propionibacterium acnes HL103PA1]
          Length = 123

 Score = 43.5 bits (101), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 43/103 (41%), Gaps = 1/103 (0%)

Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
           P    Y Y   Y+   +    PA I     +    +A +  + +   GISR D + D   
Sbjct: 18  PVGGVYDYSAMYTGGETRLTAPADISGTAAQTATAMARVVQKELDFSGISRVDAIVDESG 77

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           R VF LE    PGMT  S+ P     AG    E+   +V+D +
Sbjct: 78  RPVF-LEAGAAPGMTATSLVPVAMKAAGLDLGEVCSRLVDDVA 119


>gi|170079000|ref|YP_001735638.1| cyanophycin synthetase [Synechococcus sp. PCC 7002]
 gi|169886669|gb|ACB00383.1| cyanophycin synthetase [Synechococcus sp. PCC 7002]
          Length = 897

 Score = 43.5 bits (101), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 35/102 (34%), Positives = 48/102 (47%), Gaps = 10/102 (9%)

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP----PYVIKPLKG 135
             SGILA  L+ DK  +K +++  GVPV P   V R+  D +  I      P VIKPL G
Sbjct: 207 NQSGILAVELACDKEGTKNILADAGVPV-PRGTVIRYLDDLEDAIEDVGGYPIVIKPLDG 265

Query: 136 GSSLGIIVIKK---DQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
               GI +  K   D     DL   +S      +++E+Y  G
Sbjct: 266 NHGRGITIDIKTWADAEHAYDLASEASKTR--SVIVERYYKG 305


>gi|332707486|ref|ZP_08427532.1| D-alanine-D-alanine ligase family ATP-grasp enzyme [Lyngbya
           majuscula 3L]
 gi|332353744|gb|EGJ33238.1| D-alanine-D-alanine ligase family ATP-grasp enzyme [Lyngbya
           majuscula 3L]
          Length = 89

 Score = 43.5 bits (101), Expect = 0.041,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 36/60 (60%), Gaps = 3/60 (5%)

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVM 182
           I PP VIKP    +S G+ ++K       D    +++ H DQ+L+E+Y++ G E+ CG++
Sbjct: 22  IKPPVVIKPASSDNSCGVTLVKNVAD--YDAALKTAFEHSDQVLVEEYIELGREVRCGIL 79


>gi|193872870|gb|ACF23125.1| D-alanine-D-alanine ligase [Streptococcus mitis]
          Length = 96

 Score = 43.5 bits (101), Expect = 0.041,   Method: Composition-based stats.
 Identities = 30/93 (32%), Positives = 50/93 (53%), Gaps = 4/93 (4%)

Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVL 215
           ++ +  ++L  Q V+  E+  G++G+  +  T   E+ V    FY Y+ KY     T  +
Sbjct: 5   AFQYDSRVLGRQGVNAREIEVGLLGNYDVKSTLPGEV-VKDVAFYDYDAKYIDNKITMDI 63

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           PAKI  D+   +++ A  A +AIG  G+SR DF
Sbjct: 64  PAKISDDVVAVMRQNAETAFRAIGGLGLSRCDF 96


>gi|239917214|ref|YP_002956772.1| acetyl/propionyl-CoA carboxylase, alpha subunit [Micrococcus luteus
           NCTC 2665]
 gi|281414312|ref|ZP_06246054.1| acetyl/propionyl-CoA carboxylase, alpha subunit [Micrococcus luteus
           NCTC 2665]
 gi|239838421|gb|ACS30218.1| acetyl/propionyl-CoA carboxylase, alpha subunit [Micrococcus luteus
           NCTC 2665]
          Length = 709

 Score = 43.1 bits (100), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 45/193 (23%), Positives = 79/193 (40%), Gaps = 27/193 (13%)

Query: 92  DKMRSKQVVSSCGVPVCPSILVNRFTMDSQ-----HLISPPYVIKPLKGGSSLGIIVIKK 146
           DK+R+K+ V++  VPV P I     T D+Q       +  P +IKP  GG   G++ ++ 
Sbjct: 125 DKIRAKETVAAYDVPVVPGIQDPTLT-DAQITAEAERVGFPLLIKPSAGGGGKGMVAVRA 183

Query: 147 DQSIPLDLLQSSSWNHG----DQLLIEQYVDGIE-LTCGVMGDASLDVTEIAVPKSDFYS 201
            + +P  L  +          D LL+E+ +     +   V  DA      +         
Sbjct: 184 AEELPGALASARRTARSAFGDDTLLLERLITAPRHVEVQVFADAHGATVHLG-------E 236

Query: 202 YELKYSSLNSTHVLPAKIPL--------DIYKEVQRLAFLAHQAIGCRGISRSDFLF-DP 252
            E      +   +  A  PL        ++ + + R A  A  ++G RG    +FL  D 
Sbjct: 237 RECSLQRRHQKVIEEAPAPLLTGLAHGAELRERLGRAAVDAAVSVGYRGAGTVEFLVSDE 296

Query: 253 LSRKVFWLEINVQ 265
              + F++E+N +
Sbjct: 297 NPDEFFFMEMNTR 309


>gi|296808829|ref|XP_002844753.1| conserved hypothetical protein [Arthroderma otae CBS 113480]
 gi|238844236|gb|EEQ33898.1| conserved hypothetical protein [Arthroderma otae CBS 113480]
          Length = 515

 Score = 43.1 bits (100), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 37/148 (25%), Positives = 73/148 (49%), Gaps = 14/148 (9%)

Query: 86  ASALSMDKMRSKQVVSS--CGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIV 143
           A  L+ +K  ++Q+  +  C +   P+ L    + +   L + P ++KP KG SS G+  
Sbjct: 157 AVGLAQNKFATRQLDKNIFCRLVCSPADLEQMLSQEGPQL-TYPLIVKPSKGWSSEGVWK 215

Query: 144 IKKDQ----SIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG-VMGDASL---DVTEIAVP 195
           ++ +Q     +PL   +S +  HG  ++IE Y+DG E+    V+ D  +   +V +    
Sbjct: 216 VENEQELREKVPLLWRESFTAWHGHDVVIETYIDGPEVDANMVLVDGEIVYFEVNDDFPS 275

Query: 196 KSDFYSYELKYSSLN---STHVLPAKIP 220
             D+ + E      N   ++++LP+ +P
Sbjct: 276 AGDYATGETDARVANFVETSNMLPSALP 303


>gi|284040918|ref|YP_003390848.1| alpha-L-glutamate ligase, RimK family [Spirosoma linguale DSM 74]
 gi|283820211|gb|ADB42049.1| alpha-L-glutamate ligase, RimK family [Spirosoma linguale DSM 74]
          Length = 302

 Score = 43.1 bits (100), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 50/211 (23%), Positives = 93/211 (44%), Gaps = 28/211 (13%)

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNR-FTMDSQHLI----SPPYVIKPLKGGSSLGIIVI 144
           S +K+RS QV+S  GV +  +I  N     D   LI     PP VIK L+G   +G+++ 
Sbjct: 97  SRNKLRSLQVLSKAGVGLPKTIFANHPKNGDVTQLIKLVGGPPVVIKLLEGTQGIGVVLA 156

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYV---DGIELTCGVMGDASLDVTEIAVPKSDFYS 201
           +  ++    +   + +     +L++++V    G ++   V+G   +   +    + +F S
Sbjct: 157 ETTKAAKSTI--EAFYGLKKHVLVQEFVAEAKGSDIRAFVVGGRVVGAIKRQGLEGEFRS 214

Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
                    + H     + + +  + ++ A  A +A+G + ++  D L  P  R    LE
Sbjct: 215 ---------NIHRGGNAVTVTLTPDEEQTAVAAARALGLK-VAGVDML--PSDRGPLVLE 262

Query: 262 INVQPGM------TPVSIFPEMAAYAGYSFR 286
           +N  PG+      T V I  E+ AY     R
Sbjct: 263 VNSSPGLEGIEKATGVDIATEVIAYIEEKIR 293


>gi|86605337|ref|YP_474100.1| phosphoribosylamine--glycine ligase [Synechococcus sp. JA-3-3Ab]
 gi|86553879|gb|ABC98837.1| phosphoribosylamine--glycine ligase [Synechococcus sp. JA-3-3Ab]
          Length = 431

 Score = 43.1 bits (100), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 43/195 (22%), Positives = 87/195 (44%), Gaps = 14/195 (7%)

Query: 67  LVQAILELLE---IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
           LV+ I++  +   +P       A+ L   K+ +KQ++   G+P  P++     +    HL
Sbjct: 76  LVEGIVDAFQAAGLPIFGPSRAAAQLEGSKLWAKQLMQEAGIPTAPAVGFADLSEALAHL 135

Query: 124 ISPPYVIKPLKGGSSLGI-IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            S  Y +   K G + G  + + +++   +  L+++    GDQ+LIE+++ G E++   +
Sbjct: 136 NSRSYPVVIKKDGLAAGKGVTVAQNREEAVQALEAALAKPGDQVLIEEFIPGQEVSVLAL 195

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ------ 236
            D  + V    +P +  Y    +  +  +T  + A  P D     + LA +  Q      
Sbjct: 196 TDGQICVP---LPPAQDYKRLGEGDTGPNTGGMGAHAPADHLVTPEGLARIQTQILDPTL 252

Query: 237 -AIGCRGISRSDFLF 250
            A+  RGI     ++
Sbjct: 253 EALQRRGIRYQGVIY 267


>gi|317149912|ref|XP_001823475.2| hypothetical protein AOR_1_1728114 [Aspergillus oryzae RIB40]
          Length = 1086

 Score = 43.1 bits (100), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 41/180 (22%), Positives = 83/180 (46%), Gaps = 15/180 (8%)

Query: 92  DKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIKPLKGGSSLGIIVIK 145
           DK+++KQ+ + C VPV P++   R T D + +      +  P +IK + GG   GI +++
Sbjct: 140 DKLKAKQLATQCKVPVLPAM--PRSTSDLKEIRTFARQVGYPIMIKAVDGGGGRGIRLVR 197

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQ-YVDGI-ELTCGVMGDASLDVTEIAVPKSDFYSYE 203
           ++  +   +  +++ +    + +E+  VDG   +   V+GD  +DV  +           
Sbjct: 198 QEGELEHAVRAATNESPSQTVFVEKAAVDGFHHVEVQVVGDG-IDVCHLWERDCSLQRRF 256

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            K      + +   ++   +     R+A    +AI  R +   +FL     R+ ++LEIN
Sbjct: 257 QKVVEFAPSLMQNREVVEQVLNAALRMA----KAIRYRSLGTVEFLVHNHRREFYFLEIN 312


>gi|302560530|ref|ZP_07312872.1| acetyl/propionyl-CoA carboxylase, alpha subunit [Streptomyces
           griseoflavus Tu4000]
 gi|302478148|gb|EFL41241.1| acetyl/propionyl-CoA carboxylase, alpha subunit [Streptomyces
           griseoflavus Tu4000]
          Length = 648

 Score = 43.1 bits (100), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 51/97 (52%), Gaps = 10/97 (10%)

Query: 86  ASALSMDKMRSKQVVSSCGVPVCP----SILVNRFTMDSQHLISPPYVIKPLKGGSSLGI 141
           A AL  DK+R+K+ V + GVPV P    S L +    ++   I  P ++KP  GG   G+
Sbjct: 109 AIALMGDKIRAKETVKAAGVPVVPGSSGSGLTDEQLAEAAREIGVPVLLKPSAGGGGKGM 168

Query: 142 IVIKKDQSIPLDLLQSSSWNHG-----DQLLIEQYVD 173
            ++ +D S+  D + ++          D LL+E+++D
Sbjct: 169 RLV-RDVSVLADEIAAARREARASFGDDTLLVERWID 204


>gi|85374184|ref|YP_458246.1| hypothetical protein ELI_06785 [Erythrobacter litoralis HTCC2594]
 gi|84787267|gb|ABC63449.1| hypothetical protein ELI_06785 [Erythrobacter litoralis HTCC2594]
          Length = 336

 Score = 43.1 bits (100), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 70/313 (22%), Positives = 118/313 (37%), Gaps = 42/313 (13%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLH-- 59
           A+  GG+  E            S LE  G  ++  D  R   ++      D  F +L+  
Sbjct: 26  ALWGGGMHPEDGNHAIYHHEVRSTLEGMGLNLALADTYR---VLFDTPDADFVFPLLNRG 82

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT-M 118
           G    + L+  +  +  IPY  +      L  DK  SK V +  GVP        R   +
Sbjct: 83  GFVNSEMLIPTLCNMHRIPYLGAMPFLRGLGDDKSVSKLVSTHAGVPTADWFCFRRGAPV 142

Query: 119 DSQHLISPP---YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175
           +   L + P   +VIKP    +S GI      Q +   +        G   ++E Y+DG 
Sbjct: 143 EEASLPAAPDGRWVIKPNASSASWGISDAFDFQGVANAIANIHG--QGHDAIVEPYLDGY 200

Query: 176 ELTCGVMGDASLDVTEIAVP--------KSDFYSYELKYSSLNSTHVLPAKI-------P 220
           ++ C  +   ++D    A+P            ++Y  K   + +T     K        P
Sbjct: 201 DVQCAFI---TIDGEARALPMLWYEREDTQKLWTYYEKRDLVQNTEKAALKTFDNPDFAP 257

Query: 221 L--DIYKEVQR--LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPE 276
           L  D+ ++V R  L F            R +F  D     + ++EIN+   +    +  +
Sbjct: 258 LITDMARKVARELLPF---------DYGRIEFRVDLEKGDINFIEINLNCNLWSEKVMAK 308

Query: 277 MAAYAGYSFRELL 289
            A +AG+S  +LL
Sbjct: 309 AAKFAGFSHADLL 321


>gi|33602559|ref|NP_890119.1| cyanophycin synthetase [Bordetella bronchiseptica RB50]
 gi|33576998|emb|CAE34078.1| cyanophycin synthetase [Bordetella bronchiseptica RB50]
          Length = 879

 Score = 43.1 bits (100), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 28/104 (26%), Positives = 55/104 (52%), Gaps = 7/104 (6%)

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVNRF--TMDSQHLISPPYVIKPLKGGSSLGII 142
           +A  +S DK  +K+++S+CGVPV    LV       ++   I  P V+KP  G    G+ 
Sbjct: 220 IAEGISRDKDLTKELLSTCGVPVPEGRLVQSAVDAWEAAQDIGLPVVVKPYDGNHGRGVF 279

Query: 143 --VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
             ++ +D+   ++   + + + G  +++E+++ G E    V+GD
Sbjct: 280 TNLLTRDE---IESAYAVAVDEGSGVIVERFITGNEHRLLVVGD 320


>gi|21232538|ref|NP_638455.1| ribosomal protein S6 modification protein [Xanthomonas campestris
           pv. campestris str. ATCC 33913]
 gi|66767376|ref|YP_242138.1| ribosomal protein S6 modification protein [Xanthomonas campestris
           pv. campestris str. 8004]
 gi|81306644|sp|Q4UXV5|RIMK_XANC8 RecName: Full=Ribosomal protein S6 modification protein
 gi|81793071|sp|Q8P665|RIMK_XANCP RecName: Full=Ribosomal protein S6 modification protein
 gi|21114331|gb|AAM42379.1| ribosomal protein S6 modification protein [Xanthomonas campestris
           pv. campestris str. ATCC 33913]
 gi|66572708|gb|AAY48118.1| ribosomal protein S6 modification protein [Xanthomonas campestris
           pv. campestris str. 8004]
          Length = 291

 Score = 43.1 bits (100), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 51/211 (24%), Positives = 99/211 (46%), Gaps = 24/211 (11%)

Query: 70  AILELLEIPYTHSGILASAL--SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS-- 125
           A+L  LE   T++   + A+  S DK+R+ Q+++S G+ + P  +      D+Q L+S  
Sbjct: 75  AVLRQLEFMGTYTPNPSDAILRSRDKLRAHQLLASQGIDM-PVTVFGDNPDDTQDLLSML 133

Query: 126 --PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV---DGIELTCG 180
             PP+V+K  +G    G+I+ +K  S    ++++    + +  ++++++   +G +L C 
Sbjct: 134 GPPPHVVKLNEGAQGAGVILTEK-ASASRGVVEALRGLYAN-FIVQEFIGEAEGADLRCF 191

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V+GD  +          DF S       L  T  +    P +     Q +A  + +A+G 
Sbjct: 192 VVGDRVVAAMRRQAADGDFRS----NLHLGGTAAMAEASPQE-----QDVAVRSARALGL 242

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271
             ++  D +     R    LE+N  PG+  V
Sbjct: 243 -AVAGVDLIRS--QRGPLVLEVNSTPGLEGV 270


>gi|78777884|ref|YP_394199.1| S6 modification enzyme RimK [Sulfurimonas denitrificans DSM 1251]
 gi|78498424|gb|ABB44964.1| SSU ribosomal protein S6P modification protein [Sulfurimonas
           denitrificans DSM 1251]
          Length = 310

 Score = 43.1 bits (100), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 47/209 (22%), Positives = 99/209 (47%), Gaps = 27/209 (12%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS----PP 127
            E++++ ++ +G LA   S DK+RS Q++S  GV +  ++  +  + +++ +I      P
Sbjct: 80  FEMMDV-FSATGSLAIKRSRDKLRSLQILSKNGVDMPKTVFASNKS-NAKDVIELSGGAP 137

Query: 128 YVIKPLKGGSSLGIIVIKKDQSIP--LDLLQSSSWNHGDQLLIEQYVD---GIELTCGVM 182
            V+K L+G   +G++++  +++    LD       N    LL+++Y++   G ++   ++
Sbjct: 138 LVLKILEGTQGVGVVLVDSEKAAKSVLDAFYGMDVN----LLVQEYIEEAGGADIRVFIV 193

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
           G   +   +    + DF S  L      + H L         K+ +  A  A +A+G  G
Sbjct: 194 GGKIIGAMKRQGAEGDFRS-NLHQGGSATAHKLT--------KKEKETALAAAKAMGL-G 243

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPV 271
           I   D +    +R    +E+N  PG+  +
Sbjct: 244 ICGVDMIQS--NRGPLVMEVNSSPGLEGI 270


>gi|325962779|ref|YP_004240685.1| acetyl/propionyl-CoA carboxylase, subunit alpha [Arthrobacter
           phenanthrenivorans Sphe3]
 gi|323468866|gb|ADX72551.1| acetyl/propionyl-CoA carboxylase, alpha subunit [Arthrobacter
           phenanthrenivorans Sphe3]
          Length = 745

 Score = 43.1 bits (100), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 63/147 (42%), Gaps = 20/147 (13%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           ID  R  G+   H  P   F   + +F         L+   I +   GI A  +  DK+R
Sbjct: 82  IDACRKAGVEAVH--PGYGFLSENADFAR------ALDQAGITFIGPGIDALDVMGDKIR 133

Query: 96  SKQVVSSCGVPVCPSILVNRFTMDSQHLISP------PYVIKPLKGGSSLGIIVIKKDQS 149
           SK  V+  GVPV P   V    M  + L++       P +IKP  GG   G+ V+++   
Sbjct: 134 SKNHVAGYGVPVVPG--VAEPGMTDEQLVAAAAAVGFPLLIKPSAGGGGKGMHVVERAAD 191

Query: 150 IPLDLLQ----SSSWNHGDQLLIEQYV 172
           +P  L      ++S    D L +E+ V
Sbjct: 192 LPATLATARRVAASAFGDDTLFLERLV 218


>gi|7157931|gb|AAF37345.1|AF170806_1 D-alanine:D-alanine ligase [Enterococcus mundtii]
          Length = 105

 Score = 43.1 bits (100), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 27/106 (25%), Positives = 56/106 (52%), Gaps = 6/106 (5%)

Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIA 193
           SS+GI   K +    L    ++++ +  + ++EQ ++  E+   V+G+  +  T   E+ 
Sbjct: 1   SSVGIT--KAENREELQNALATAYQYDSRAIVEQGIEAREIEVAVLGNEDVRTTLPGEV- 57

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
           V    FY Y+ KY +      +PA++P +++++ Q  A LA+  +G
Sbjct: 58  VKDVAFYDYDAKYINNRIEMQIPAEVPEEVHQKAQEYAKLAYTMLG 103


>gi|326441274|ref|ZP_08216008.1| acetyl/propionyl CoA carboxylase subunit alpha [Streptomyces
           clavuligerus ATCC 27064]
          Length = 648

 Score = 43.1 bits (100), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 49/96 (51%), Gaps = 8/96 (8%)

Query: 86  ASALSMDKMRSKQVVSSCGVPVCP----SILVNRFTMDSQHLISPPYVIKPLKGGSSLGI 141
           A AL  DK+R+K+ V + GVPV P    S L +    D+      P ++KP  GG   G+
Sbjct: 109 AIALMGDKIRAKETVRAAGVPVVPGSSGSGLSDAELADAARETGMPVLLKPSAGGGGKGM 168

Query: 142 IVIKKDQSIPLDLLQSSSWNHG----DQLLIEQYVD 173
            +++   ++P ++  +          D LL+E+++D
Sbjct: 169 RLVRDAAALPEEIAAARREARASFGDDTLLVERWID 204


>gi|84622761|ref|YP_450133.1| ribosomal protein S6 modification protein [Xanthomonas oryzae pv.
           oryzae MAFF 311018]
 gi|84029435|sp|Q5H3K7|RIMK_XANOR RecName: Full=Ribosomal protein S6 modification protein
 gi|123766627|sp|Q2P6G8|RIMK_XANOM RecName: Full=Ribosomal protein S6 modification protein
 gi|84366701|dbj|BAE67859.1| ribosomal protein S6 modification protein [Xanthomonas oryzae pv.
           oryzae MAFF 311018]
          Length = 295

 Score = 43.1 bits (100), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 47/211 (22%), Positives = 101/211 (47%), Gaps = 24/211 (11%)

Query: 70  AILELLEIPYTHSGILASAL--SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS-- 125
           A+L  LE   T++   + A+  + DK+R+ Q++++ G+ + P  +      D+Q L+S  
Sbjct: 75  AVLRQLEFMGTYTPNPSDAILRARDKLRAHQLLAAQGIDM-PVTVFGDNPDDTQDLLSML 133

Query: 126 --PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV---DGIELTCG 180
             PP+V+K  +G    G+I+ +K  S    ++++    + +  ++++++   +G +L C 
Sbjct: 134 GPPPHVVKLNEGAQGAGVILTEK-ASASRSVVEALRGLYAN-FIVQEFIGEAEGADLRCF 191

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V+GD  +        + DF S         + H+    +  D  +  + +A  + +A+G 
Sbjct: 192 VVGDRVVAAMRRQAAEGDFRS---------NLHLGGTAVVADATELEREVAVRSARALGL 242

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271
             ++  D +     R    LE+N  PG+  V
Sbjct: 243 -AVAGVDLIRS--KRGPLVLEVNSTPGLEGV 270


>gi|254393027|ref|ZP_05008190.1| acetyl/propionyl CoA carboxylase alpha subunit [Streptomyces
           clavuligerus ATCC 27064]
 gi|294812775|ref|ZP_06771418.1| Acetyl/propionyl CoA carboxylase alpha subunit [Streptomyces
           clavuligerus ATCC 27064]
 gi|197706677|gb|EDY52489.1| acetyl/propionyl CoA carboxylase alpha subunit [Streptomyces
           clavuligerus ATCC 27064]
 gi|294325374|gb|EFG07017.1| Acetyl/propionyl CoA carboxylase alpha subunit [Streptomyces
           clavuligerus ATCC 27064]
          Length = 650

 Score = 43.1 bits (100), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 49/96 (51%), Gaps = 8/96 (8%)

Query: 86  ASALSMDKMRSKQVVSSCGVPVCP----SILVNRFTMDSQHLISPPYVIKPLKGGSSLGI 141
           A AL  DK+R+K+ V + GVPV P    S L +    D+      P ++KP  GG   G+
Sbjct: 111 AIALMGDKIRAKETVRAAGVPVVPGSSGSGLSDAELADAARETGMPVLLKPSAGGGGKGM 170

Query: 142 IVIKKDQSIPLDLLQSSSWNHG----DQLLIEQYVD 173
            +++   ++P ++  +          D LL+E+++D
Sbjct: 171 RLVRDAAALPEEIAAARREARASFGDDTLLVERWID 206


>gi|33592810|ref|NP_880454.1| cyanophycin synthetase [Bordetella pertussis Tohama I]
 gi|33572458|emb|CAE42027.1| cyanophycin synthetase [Bordetella pertussis Tohama I]
 gi|332382223|gb|AEE67070.1| cyanophycin synthetase [Bordetella pertussis CS]
          Length = 857

 Score = 43.1 bits (100), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 28/108 (25%), Positives = 56/108 (51%), Gaps = 7/108 (6%)

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF--TMDSQHLISPPYVIKPLKGGSS 138
            +  +A  +S DK  +K+++S+CGVPV    LV       ++   I  P V+KP  G   
Sbjct: 216 RTSAIAEGISRDKDLTKELLSTCGVPVPEGRLVQSAADAWEAAQDIGLPVVVKPYDGNHG 275

Query: 139 LGII--VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
            G+   ++ +D+   ++   + + + G  +++E+++ G E    V+GD
Sbjct: 276 RGVFTNLLTRDE---IESAYAVAVDEGSGVIVERFITGNEHRLLVVGD 320


>gi|294624280|ref|ZP_06702987.1| ribosomal protein S6 modification protein [Xanthomonas fuscans
           subsp. aurantifolii str. ICPB 11122]
 gi|292601423|gb|EFF45453.1| ribosomal protein S6 modification protein [Xanthomonas fuscans
           subsp. aurantifolii str. ICPB 11122]
          Length = 305

 Score = 43.1 bits (100), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 47/211 (22%), Positives = 102/211 (48%), Gaps = 24/211 (11%)

Query: 70  AILELLEIPYTHSGILASAL--SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS-- 125
           A+L  LE   T++   + A+  S DK+R+ Q++++ G+ + P  +      D+Q L+S  
Sbjct: 85  AVLRQLEFMGTYTPNPSDAILRSRDKLRAHQLLAAQGIDM-PVTVFGDNPDDTQDLLSML 143

Query: 126 --PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV---DGIELTCG 180
             PP+V+K  +G    G+I+ +K  S    ++++    + +  ++++++   +G +L C 
Sbjct: 144 GPPPHVVKLNEGAQGAGVILTEK-ASASRGVVEALRGLYAN-FIVQEFIGEAEGADLRCF 201

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V+GD  +        + DF S         + H+       +  ++ Q +A  + +A+G 
Sbjct: 202 VVGDKVVAAMRRQAAEGDFRS---------NLHLGGTAAVAEATEQEQEVAVRSARALGL 252

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271
             ++  D +    +R    L++N  PG+  V
Sbjct: 253 -AVAGVDLIRS--TRGPLVLKVNSTPGLEGV 280


>gi|213421203|ref|ZP_03354269.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Typhi str. E01-6750]
          Length = 104

 Score = 43.1 bits (100), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 28/42 (66%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDK 93
           D+ F ++HG  GEDG +Q +L +  +P+  S +L+SA  MDK
Sbjct: 61  DVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLSSAACMDK 102


>gi|326433625|gb|EGD79195.1| D-alanine-D-alanine ligase [Salpingoeca sp. ATCC 50818]
          Length = 829

 Score = 43.1 bits (100), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 59/272 (21%), Positives = 111/272 (40%), Gaps = 55/272 (20%)

Query: 68  VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV------------NR 115
           V A+ +L  +PYT +G    A+  DK        S GVPV   + V              
Sbjct: 549 VTALFDLKGLPYTGAGSACLAVCYDKGLVNAAAKSMGVPVPAEVQVLAHEDVHASTAATP 608

Query: 116 FTMDSQHLISP---PYVIKPLKGGSSLGI----IVIKKDQSIP-LDLLQSSSWNHGDQLL 167
            +   Q +++    P  IKP +G  S+GI    IV  +++ +  ++ +++++      +L
Sbjct: 609 ASSAVQRVVAEVGFPAFIKPARGDGSVGITTGSIVHGEEELVAYINTIRAAANVLCKDVL 668

Query: 168 IEQYVDGIELTCGVMGDASLD----------VTEIAVPKSDF----------YSYELKY- 206
           +++Y+ G E++ GV+G+ + D          + ++ V + D+           +YE K+ 
Sbjct: 669 VQEYLQGEEISIGVVGNPAFDAVSGDVDPASIRQLPVLRVDYSALPSDLPPILAYESKWD 728

Query: 207 ---------SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
                    S   +T++ P+ +   +Y +  RL       +  R   R D  F       
Sbjct: 729 PSSPYWTAVSYAPATNLSPSHV-AQLYNQCCRL----FARLELRDYGRFDLRFSERDNVF 783

Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
             LE+N  PG         M   AG  + +L+
Sbjct: 784 KLLEVNPNPGWCWDGKLALMYERAGLPYEQLI 815


>gi|71898250|ref|ZP_00680424.1| S6 modification enzyme RimK [Xylella fastidiosa Ann-1]
 gi|71731989|gb|EAO34046.1| S6 modification enzyme RimK [Xylella fastidiosa Ann-1]
          Length = 301

 Score = 43.1 bits (100), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 49/208 (23%), Positives = 99/208 (47%), Gaps = 24/208 (11%)

Query: 70  AILELLEIPYTHSGILASAL--SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS-- 125
           A+L   E+  T+S   + A+  S DK+R+ Q++++ G+ + P  +      D+Q L+S  
Sbjct: 75  AVLRQFELMGTYSPNPSDAILRSRDKLRAHQLLAAQGIDM-PMTVFGDNPDDTQDLLSML 133

Query: 126 --PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV---DGIELTCG 180
             PP+V+K  +G    G+I+ +K+ S    L+++    + +  L+++++   D  +L C 
Sbjct: 134 GPPPHVVKLNEGAQGKGVILSEKN-SASRGLVEALRGLYAN-FLVQEFISEADSADLRCF 191

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V+G+  +        + DF S         + H+  +       +E Q +A  +  A+G 
Sbjct: 192 VVGNQVVATMRRQAAEGDFRS---------NLHLGGSATAATASEEEQEVAVRSAHALGL 242

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGM 268
             ++  D +     R    LE+N  PG+
Sbjct: 243 T-VAGVDLIRS--RRGPLVLEVNPTPGL 267


>gi|187926155|ref|YP_001892500.1| cyanophycin synthetase [Ralstonia pickettii 12J]
 gi|241665643|ref|YP_002984002.1| cyanophycin synthetase [Ralstonia pickettii 12D]
 gi|187727909|gb|ACD29073.1| cyanophycin synthetase [Ralstonia pickettii 12J]
 gi|240867670|gb|ACS65330.1| cyanophycin synthetase [Ralstonia pickettii 12D]
          Length = 886

 Score = 43.1 bits (100), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 34/135 (25%), Positives = 66/135 (48%), Gaps = 11/135 (8%)

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGII 142
           +A ++S DK  +K ++ SCGVPV    +V+      D+   I  P V+KP  G    G+ 
Sbjct: 212 IAESISRDKDLTKSLLQSCGVPVPEGRMVDSAEDAWDAAEDIGVPVVVKPYDGNHGRGVF 271

Query: 143 --VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE----LTCGVMGDASLDVTEIAVPK 196
             ++ +++   ++   + +   G+ +++E++V G E    +  G +  A++  T   V  
Sbjct: 272 TNLMTREE---VETAYAVAIEEGNGVIVERFVSGNEHRLLVVGGRLAAAAMGETASVVGD 328

Query: 197 SDFYSYELKYSSLNS 211
            +    EL  S +NS
Sbjct: 329 GNSTIEELIESQINS 343


>gi|28199785|ref|NP_780099.1| ribosomal protein S6 modification protein [Xylella fastidiosa
           Temecula1]
 gi|182682536|ref|YP_001830696.1| alpha-L-glutamate ligase [Xylella fastidiosa M23]
 gi|81438275|sp|Q87AB0|RIMK_XYLFT RecName: Full=Ribosomal protein S6 modification protein
 gi|226694906|sp|B2I9Q1|RIMK_XYLF2 RecName: Full=Ribosomal protein S6 modification protein
 gi|28057906|gb|AAO29748.1| ribosomal protein S6 modification protein [Xylella fastidiosa
           Temecula1]
 gi|182632646|gb|ACB93422.1| alpha-L-glutamate ligase, RimK family [Xylella fastidiosa M23]
 gi|307578815|gb|ADN62784.1| ribosomal protein S6 modification protein [Xylella fastidiosa
           subsp. fastidiosa GB514]
          Length = 301

 Score = 43.1 bits (100), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 49/208 (23%), Positives = 99/208 (47%), Gaps = 24/208 (11%)

Query: 70  AILELLEIPYTHSGILASAL--SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS-- 125
           A+L   E+  T+S   + A+  S DK+R+ Q++++ G+ + P  +      D+Q L+S  
Sbjct: 75  AVLRQFELMGTYSPNPSDAILRSRDKLRAHQLLAAQGIDM-PMTVFGDNPDDTQDLLSML 133

Query: 126 --PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV---DGIELTCG 180
             PP+V+K  +G    G+I+ +K+ S    L+++    + +  L+++++   D  +L C 
Sbjct: 134 GPPPHVVKLNEGAQGKGVILSEKN-SASRGLVEALRGLYAN-FLVQEFISEADSADLRCF 191

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V+G+  +        + DF S         + H+  +       +E Q +A  +  A+G 
Sbjct: 192 VVGNQVVATMRRQAAEGDFRS---------NLHLGGSATAATASEEEQEVAVRSAHALGL 242

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGM 268
             ++  D +     R    LE+N  PG+
Sbjct: 243 T-VAGVDLIRS--RRGPLVLEVNPTPGL 267


>gi|297160329|gb|ADI10041.1| acetyl/propionyl CoA carboxylase alpha subunit [Streptomyces
           bingchenggensis BCW-1]
          Length = 732

 Score = 42.7 bits (99), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 54/102 (52%), Gaps = 10/102 (9%)

Query: 83  GILASALSM--DKMRSKQVVSSCGVPVCP----SILVNRFTMDSQHLISPPYVIKPLKGG 136
           G  A+A+ +  DK+R+K+ V + GVPV P    S L +    ++   I  P ++KP  GG
Sbjct: 118 GPPAAAIELMGDKIRAKESVRAAGVPVVPGSTGSALTDADLAEAAREIGMPVLLKPSAGG 177

Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHG----DQLLIEQYVDG 174
              G+ +++ +  +  ++  +     G    D LL+E+++DG
Sbjct: 178 GGKGMRLVRDEARLADEIAAARREARGAFGDDTLLVERWIDG 219


>gi|188578200|ref|YP_001915129.1| ribosomal protein S6 modification protein [Xanthomonas oryzae pv.
           oryzae PXO99A]
 gi|188522652|gb|ACD60597.1| ribosomal protein S6 modification protein [Xanthomonas oryzae pv.
           oryzae PXO99A]
          Length = 305

 Score = 42.7 bits (99), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 47/211 (22%), Positives = 101/211 (47%), Gaps = 24/211 (11%)

Query: 70  AILELLEIPYTHSGILASAL--SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS-- 125
           A+L  LE   T++   + A+  + DK+R+ Q++++ G+ + P  +      D+Q L+S  
Sbjct: 85  AVLRQLEFMGTYTPNPSDAILRARDKLRAHQLLAAQGIDM-PVTVFGDNPDDTQDLLSML 143

Query: 126 --PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV---DGIELTCG 180
             PP+V+K  +G    G+I+ +K  S    ++++    + +  ++++++   +G +L C 
Sbjct: 144 GPPPHVVKLNEGAQGAGVILTEK-ASASRSVVEALRGLYAN-FIVQEFIGEAEGADLRCF 201

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V+GD  +        + DF S         + H+    +  D  +  + +A  + +A+G 
Sbjct: 202 VVGDRVVAAMRRQAAEGDFRS---------NLHLGGTAVVADATELEREVAVRSARALGL 252

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271
             ++  D +     R    LE+N  PG+  V
Sbjct: 253 -AVAGVDLIRS--KRGPLVLEVNSTPGLEGV 280


>gi|297181499|gb|ADI17686.1| biotin carboxylase [uncultured gamma proteobacterium HF0130_23I23]
          Length = 446

 Score = 42.7 bits (99), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 44/186 (23%), Positives = 83/186 (44%), Gaps = 21/186 (11%)

Query: 92  DKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147
           DK+++K++VSS G+P+ P     I  N         I  P ++K   GG   G+ ++  +
Sbjct: 117 DKIKAKELVSSLGIPIVPGYSGDIQSNEQIRSIVKEIGYPVIVKATSGGGGKGMRIVNSE 176

Query: 148 QSIPLDLLQSSSWNH----GDQLLIEQYVDG---IELTCGVMGDASLDVTEIAVPKSDFY 200
             +   ++ + +        D++ IE+Y+     IE+   V GD       +    S   
Sbjct: 177 DELWDSIVSAQNEAKLAFGDDKVFIEKYLSKPRHIEIQ--VFGDGKGKAVHLY---SRDC 231

Query: 201 SYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
           S + KY  +      PA  IP +   E+Q +   A + I   G    +FL++  + + F+
Sbjct: 232 SLQRKYQKI--LEEAPALNIPKEKLDEIQNICVRACKEINYEGAGTLEFLYE--NGQFFF 287

Query: 260 LEINVQ 265
           +E+N +
Sbjct: 288 IEMNTR 293


>gi|256392939|ref|YP_003114503.1| carbamoyl-phosphate synthase L chain ATP- binding [Catenulispora
           acidiphila DSM 44928]
 gi|256359165|gb|ACU72662.1| Carbamoyl-phosphate synthase L chain ATP- binding [Catenulispora
           acidiphila DSM 44928]
          Length = 662

 Score = 42.7 bits (99), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 37/141 (26%), Positives = 69/141 (48%), Gaps = 15/141 (10%)

Query: 44  LVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           +V A L+ D   + +H  +G   E+  + A +    + +   G    A   DK R++ ++
Sbjct: 66  VVEAALRTDC--DAVHPGYGFLSENPRLAAAVAQAGLVFVGPGAETIAAMGDKARARTLM 123

Query: 101 SSCGVPVCP--SILVNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
           +  GVPV P  S   +   + +Q    I  P ++KP+ GG   G+ V+    ++P  + Q
Sbjct: 124 AQAGVPVLPGSSQATDSLAVLAQDAERIGYPVILKPVAGGGGKGMAVVAAADALPGAVEQ 183

Query: 157 S-----SSWNHGDQLLIEQYV 172
           +     S++  G +LL+E+YV
Sbjct: 184 AVRIGRSAFGDG-RLLVERYV 203


>gi|58580833|ref|YP_199849.1| ribosomal protein S6 modification protein [Xanthomonas oryzae pv.
           oryzae KACC10331]
 gi|58425427|gb|AAW74464.1| ribosomal protein S6 modification protein [Xanthomonas oryzae pv.
           oryzae KACC10331]
          Length = 353

 Score = 42.7 bits (99), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 47/211 (22%), Positives = 101/211 (47%), Gaps = 24/211 (11%)

Query: 70  AILELLEIPYTHSGILASAL--SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS-- 125
           A+L  LE   T++   + A+  + DK+R+ Q++++ G+ + P  +      D+Q L+S  
Sbjct: 133 AVLRQLEFMGTYTPNPSDAILRARDKLRAHQLLAAQGIDM-PVTVFGDNPDDTQDLLSML 191

Query: 126 --PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV---DGIELTCG 180
             PP+V+K  +G    G+I+ +K  S    ++++    + +  ++++++   +G +L C 
Sbjct: 192 GPPPHVVKLNEGAQGAGVILTEK-ASASRSVVEALRGLYAN-FIVQEFIGEAEGADLRCF 249

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V+GD  +        + DF S         + H+    +  D  +  + +A  + +A+G 
Sbjct: 250 VVGDRVVAAMRRQAAEGDFRS---------NLHLGGTAVVADATELEREVAVRSARALGL 300

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271
             ++  D +     R    LE+N  PG+  V
Sbjct: 301 -AVAGVDLIRS--KRGPLVLEVNSTPGLEGV 328


>gi|39934462|ref|NP_946738.1| hypothetical protein RPA1388 [Rhodopseudomonas palustris CGA009]
 gi|39648311|emb|CAE26831.1| hypothetical protein RPA1388 [Rhodopseudomonas palustris CGA009]
          Length = 336

 Score = 42.7 bits (99), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 50/214 (23%), Positives = 93/214 (43%), Gaps = 28/214 (13%)

Query: 67  LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-SILVNRFTMDSQHLIS 125
            V ++ E L + +  +     AL+ DK  SK    + G+PV   +I  +   ++     +
Sbjct: 88  FVASVCEFLGLSHVGAPPNTRALAEDKWLSKLTARAIGLPVADGAIYASLADLEKPPHFA 147

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGDQLLIEQYVDGIELTCG 180
            PY +K   G +S G+     ++S+  D      + ++    G  +L+E Y  GI++T  
Sbjct: 148 GPYFVKNRFGAASEGV----SEKSVQDDWDGAAKVAAALIGRGMSVLVEAYAPGIDITVP 203

Query: 181 VMGDASLDVTEIAVPKSD----FYSYELK------YSSLNSTHVLPAKIPLDIYKEVQRL 230
           V+G  +  +  +  P+SD      + +LK      Y    S  +L  ++ +D+       
Sbjct: 204 VLGGETPMMLGVVRPRSDRIGGIITEDLKRDDPLGYEMAESDPILTDQLAVDV------T 257

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           A  A  A G     R D+  DP + +  +LE N+
Sbjct: 258 ALWA--AAGPMDYLRLDYRLDPATGQRTFLEFNI 289


>gi|298571704|gb|ADI87856.1| hypothetical protein AKSOIL_0348 [uncultured bacterium Ak20-3]
          Length = 302

 Score = 42.4 bits (98), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 47/191 (24%), Positives = 86/191 (45%), Gaps = 26/191 (13%)

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIV-- 143
           S DK+RS Q++S  G+ + P       T D + LI     PP V+K L+G   +G+++  
Sbjct: 97  SRDKLRSLQILSQKGIDL-PVTGCAHSTKDIEGLIKIAGGPPLVVKLLEGTQGIGVVLAE 155

Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVD---GIELTCGVMGDASLDVTEIAVPKSDFY 200
            KK     ++  +    N    +L+++++    G ++ C V+GD  +          +F 
Sbjct: 156 TKKAAESVIEAFRDLDAN----ILVQEFIKEASGTDIRCFVVGDKVVASMIRKAKDGEFR 211

Query: 201 SYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260
           S         + H       ++I +E + +A  A  A+G  G++  D L    +R    L
Sbjct: 212 S---------NLHRGGKGTQIEITEEERAVALKAVAAMGL-GVAGVDILRS--NRGPLVL 259

Query: 261 EINVQPGMTPV 271
           E+N  PG+  +
Sbjct: 260 EVNSTPGLKGI 270


>gi|152981863|ref|YP_001355245.1| cyanophycin synthetase [Janthinobacterium sp. Marseille]
 gi|151281940|gb|ABR90350.1| cyanophycin synthetase [Janthinobacterium sp. Marseille]
          Length = 722

 Score = 42.4 bits (98), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 32/108 (29%), Positives = 51/108 (47%), Gaps = 9/108 (8%)

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF--TMDSQHLISPPYVIKPLKGGSS 138
            +  +A  +S DK  +K ++ SCGVPV    +VN      D+   I  P VIKPL G   
Sbjct: 208 QTSAIAETISSDKELTKTLLQSCGVPVPEGRIVNSVADAWDAAESIGLPVVIKPLDGNHG 267

Query: 139 LGI---IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
            G+   +  +KD      L +  S      +++E++V G E    ++G
Sbjct: 268 RGVSTNLNNQKDIEAAFLLAEQES----SDVIVERFVRGNEHRLLIIG 311


>gi|220910205|ref|YP_002485516.1| cyanophycin synthetase [Cyanothece sp. PCC 7425]
 gi|219866816|gb|ACL47155.1| cyanophycin synthetase [Cyanothece sp. PCC 7425]
          Length = 918

 Score = 42.4 bits (98), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 38/68 (55%), Gaps = 5/68 (7%)

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP----PYVIKPLKG 135
            H+GILA  L+ DK  +K+V++  G+PV P   V R+  + +  I+     P VIKPL G
Sbjct: 207 NHTGILAVELAGDKEGAKKVMADAGIPV-PKGTVIRYLDELEDAIASIGGYPVVIKPLNG 265

Query: 136 GSSLGIIV 143
               GI +
Sbjct: 266 NHGRGITI 273


>gi|325919041|ref|ZP_08181102.1| SSU ribosomal protein S6P modification protein [Xanthomonas
           gardneri ATCC 19865]
 gi|325550477|gb|EGD21270.1| SSU ribosomal protein S6P modification protein [Xanthomonas
           gardneri ATCC 19865]
          Length = 291

 Score = 42.4 bits (98), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 51/211 (24%), Positives = 99/211 (46%), Gaps = 24/211 (11%)

Query: 70  AILELLEI--PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS-- 125
           A+L  LE    YT +   A   S DK+R+ Q++++ G+ + P  +      D+Q L+S  
Sbjct: 75  AVLRQLEFMGSYTPNPSDAILRSRDKLRAHQLLAAQGIDM-PVTVFGDNPDDTQDLLSML 133

Query: 126 --PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV---DGIELTCG 180
             PP+V+K  +G    G+I+ +K  S    ++++    + +  ++++++   +G +L C 
Sbjct: 134 GPPPHVVKLNEGTQGAGVILTEK-ASASRGVVEALRGLYAN-FIVQEFIGEAEGADLRCF 191

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V+GD  +        + DF S       L  T  +    P +     Q +A  + +A+G 
Sbjct: 192 VVGDRVVASMRRQAAEGDFRS----NLHLGGTAAVAEATPQE-----QEVAVRSARALGL 242

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271
             ++  D +    +R    LE+N  PG+  V
Sbjct: 243 -AVAGVDLIRS--NRGPLVLEVNSTPGLEGV 270


>gi|297180925|gb|ADI17129.1| biotin carboxylase [uncultured gamma proteobacterium HF0070_03O15]
          Length = 446

 Score = 42.4 bits (98), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 84/186 (45%), Gaps = 21/186 (11%)

Query: 92  DKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGI-IVIKK 146
           DK+++K++VSS G+P+ P     I  N         I  P ++K   GG   G+ IV  K
Sbjct: 117 DKIKAKELVSSLGIPIVPGYSGDIQSNEQIRSIVKEIGYPVIVKATSGGGGKGMRIVNSK 176

Query: 147 DQ---SIPLDLLQSSSWNHGDQLLIEQYVDG---IELTCGVMGDASLDVTEIAVPKSDFY 200
           D+   SI     ++      D++ IE+Y+     IE+   V GD       +    S   
Sbjct: 177 DELWDSIVSAQNEAKLAFGDDKVFIEKYLSKPRHIEIQ--VFGDGKGKAVHLY---SRDC 231

Query: 201 SYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
           S + KY  +      PA  IP +   E+Q +   A + I   G    +FL++  + + F+
Sbjct: 232 SLQRKYQKI--LEEAPALNIPKEKLDEIQNICVRACKEINYEGAGTLEFLYE--NGQFFF 287

Query: 260 LEINVQ 265
           +E+N +
Sbjct: 288 IEMNTR 293


>gi|330470535|ref|YP_004408278.1| carbamoyl-phosphate synthase subunit L [Verrucosispora maris
           AB-18-032]
 gi|328813506|gb|AEB47678.1| carbamoyl-phosphate synthase subunit L [Verrucosispora maris
           AB-18-032]
          Length = 675

 Score = 42.4 bits (98), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 40/179 (22%), Positives = 84/179 (46%), Gaps = 17/179 (9%)

Query: 92  DKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD---- 147
           DK+ +K +++  GVP+ PS        ++  +   P ++K   GG   G+ +++      
Sbjct: 115 DKLAAKTLLAEAGVPMLPSW------TEADQVTDFPVLVKASAGGGGRGMRIVRDPAGLA 168

Query: 148 QSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
           +++     +++S      + IE+YV+ G  +   ++GD    V  +A+ + D  S + ++
Sbjct: 169 EAVAGARREAASAFGDGTVFIERYVERGRHVEVQIVGDRHGTV--LALGERD-CSIQRRH 225

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             +      PA +  ++   + R A  A QA+   G    +FLF     + F+LE+N +
Sbjct: 226 QKI--VEEAPALLDAEVRARLHRAAVAAGQAVDYVGAGTVEFLFTEEG-EFFFLEMNTR 281


>gi|147832389|emb|CAN77783.1| hypothetical protein VITISV_037213 [Vitis vinifera]
          Length = 235

 Score = 42.4 bits (98), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 28/106 (26%), Positives = 48/106 (45%), Gaps = 24/106 (22%)

Query: 55  FNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC---GVPVCPSI 111
           F  +HG  GEDG +Q +LE   +PYT  G+  S + MDK+ +   ++     GV     +
Sbjct: 96  FIAVHGGMGEDGTLQFLLEAGGVPYTGPGVETSKICMDKVATSLALNHLEKFGV-----L 150

Query: 112 LVNRFTMDSQHLISPP----------------YVIKPLKGGSSLGI 141
            +N+  +  + L++ P                  +KP + G S G+
Sbjct: 151 TINKKVLRKEDLLNAPVHDIWHDLTSKLQSETLCVKPARDGCSTGV 196


>gi|294494965|ref|YP_003541458.1| hypothetical protein Mmah_0281 [Methanohalophilus mahii DSM 5219]
 gi|292665964|gb|ADE35813.1| protein of unknown function DUF201 [Methanohalophilus mahii DSM
           5219]
          Length = 360

 Score = 42.4 bits (98), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 46/101 (45%), Gaps = 20/101 (19%)

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145
           A   SMDK RSK+   S  +P+            S+   +PPY +KP    SS G  +I 
Sbjct: 97  AYDTSMDKKRSKEYFKSIDIPI-----------PSEKPQNPPYFVKPPCMSSSKGARIID 145

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186
            D         S   N  D ++IE+YV G  ++  V+GD +
Sbjct: 146 ND---------SELANIDDSMVIEEYVPGPVVSLEVVGDGN 177


>gi|85708773|ref|ZP_01039839.1| hypothetical protein NAP1_06020 [Erythrobacter sp. NAP1]
 gi|85690307|gb|EAQ30310.1| hypothetical protein NAP1_06020 [Erythrobacter sp. NAP1]
          Length = 338

 Score = 42.4 bits (98), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 63/308 (20%), Positives = 116/308 (37%), Gaps = 26/308 (8%)

Query: 6   GGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLH--GNFG 63
           GG+  E            ++LE  G  +   D   S  ++      D  F +L+  G   
Sbjct: 31  GGMHPEDGNHAIYHHEVRTSLEQLGLNLHLAD---SYDVLFTRPDVDFVFPLLNRGGFVN 87

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            + L+  +  +  +PY  +      L  DK  SK V +  GVP  P     R     +  
Sbjct: 88  SEMLIPVLCNMHRLPYLGAMPFLRGLGDDKSVSKLVATHAGVPTAPWFCFRRGAPVQESD 147

Query: 124 ISPP----YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
           + P     +VIKP    +S GI        +   +        G   ++E Y+DG ++ C
Sbjct: 148 LPPSPDGRWVIKPNASSASWGISDAYDWNGVTNSIADIHG--QGHDAIVEPYLDGYDVQC 205

Query: 180 GVMGDASLDVTEIAVP--------KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
             +   ++    +A+P            ++Y  K   + +T     K   D  +   R+ 
Sbjct: 206 AFI---TMHGKPVALPMLWYERENTQKLWTYYEKRDLVPNTEKAALKR-FDHAEFAPRIE 261

Query: 232 FLAHQ---AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
            +AH+           R +F  D  +  + ++EIN+   +    +  + A  AG+S  +L
Sbjct: 262 EMAHKFAREFLPFDYGRIEFRVDLKTGDINFIEINLNCNLWSEKVMAKAAKEAGFSHGDL 321

Query: 289 LLWMVEDA 296
           L  ++ +A
Sbjct: 322 LETLLAEA 329


>gi|329905041|ref|ZP_08273976.1| Cyanophycin synthetase [Oxalobacteraceae bacterium IMCC9480]
 gi|327547777|gb|EGF32550.1| Cyanophycin synthetase [Oxalobacteraceae bacterium IMCC9480]
          Length = 724

 Score = 42.4 bits (98), Expect = 0.088,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 51/102 (50%), Gaps = 2/102 (1%)

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGII 142
           +A ++S DK  +K ++S+CGVPV    +VN      ++   I  P  +KP  G    G+ 
Sbjct: 213 VAESISRDKDLTKVLLSACGVPVPEGRMVNSAAEAWEAAEEIGLPVAVKPYDGNHGRGVS 272

Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
           +    Q++       +   +G  +++EQ++ G E    V+GD
Sbjct: 273 LDLDSQAVVEAAYHLAHQANGGTVIVEQFIPGNEHRLLVVGD 314


>gi|254384719|ref|ZP_05000057.1| acetyl/propionyl CoA carboxylase alpha subunit [Streptomyces sp.
           Mg1]
 gi|194343602|gb|EDX24568.1| acetyl/propionyl CoA carboxylase alpha subunit [Streptomyces sp.
           Mg1]
          Length = 676

 Score = 42.4 bits (98), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 52/101 (51%), Gaps = 10/101 (9%)

Query: 83  GILASALSM--DKMRSKQVVSSCGVPVCP----SILVNRFTMDSQHLISPPYVIKPLKGG 136
           G  A A+S+  DK+R+K+ V + GVPV P    S L +   + +   I  P ++KP  GG
Sbjct: 104 GPPAKAISLMGDKIRAKETVKAAGVPVVPGSSGSGLSDAELVAAAEEIGMPVLLKPSAGG 163

Query: 137 SSLGIIVIKK----DQSIPLDLLQSSSWNHGDQLLIEQYVD 173
              G+ +++      + I     ++ S    D LL+E++VD
Sbjct: 164 GGKGMRLVRDAGLLAEEIAAARREARSSFGDDTLLVERWVD 204


>gi|251796812|ref|YP_003011543.1| urea carboxylase [Paenibacillus sp. JDR-2]
 gi|247544438|gb|ACT01457.1| urea carboxylase [Paenibacillus sp. JDR-2]
          Length = 1215

 Score = 42.0 bits (97), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 36/181 (19%), Positives = 75/181 (41%), Gaps = 12/181 (6%)

Query: 93  KMRSKQVVSSCGVPVCPSI-LVNRFTMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQS 149
           K  ++++     VP+ P   L+ +      H   I  P ++K   GG  +G+ V + +++
Sbjct: 116 KHSARELAEKANVPLLPGTPLLTQLDEAVAHAAEIGYPVILKSTAGGGGIGMRVCEDEEA 175

Query: 150 I-----PLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYEL 204
           +      +  L  +++ +G   L +       +   + G+ + +V  +            
Sbjct: 176 LRAAFDSVRHLAEANFKNGGMFLEKYIAKARHVEVQIFGNGNGEVVALGERDCSVQRRNQ 235

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K    +     P ++  +I    +RLA  A    G R     +FL+DP S K ++LE+N 
Sbjct: 236 KVVEESPAPQFPEEVRTEILACAKRLAAEA----GYRSAGTVEFLYDPSSFKFYFLEVNT 291

Query: 265 Q 265
           +
Sbjct: 292 R 292


>gi|50082941|gb|AAT70092.1| D-alanyl-D-alanine ligase [Rhodococcus globerulus]
          Length = 126

 Score = 42.0 bits (97), Expect = 0.098,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 48/93 (51%), Gaps = 7/93 (7%)

Query: 165 QLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSYELK---YSSLNSTHVLPA 217
           ++LI + V G E+ C ++G+     S +V  +A+    F  ++ K     S NST ++PA
Sbjct: 24  KVLIGEAVVGSEVGCSILGNELDLISGEVDRVALSHGFFKIHQEKDPESGSENSTFIVPA 83

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
            I  +    VQ  A   ++A+GC G++R D   
Sbjct: 84  DISEESRSLVQETAKTIYRALGCSGLARVDMFL 116


>gi|71275169|ref|ZP_00651456.1| S6 modification enzyme RimK [Xylella fastidiosa Dixon]
 gi|71899806|ref|ZP_00681956.1| S6 modification enzyme RimK [Xylella fastidiosa Ann-1]
 gi|170731161|ref|YP_001776594.1| ribosomal protein S6 modification protein [Xylella fastidiosa M12]
 gi|226694907|sp|B0U5E6|RIMK_XYLFM RecName: Full=Ribosomal protein S6 modification protein
 gi|71163978|gb|EAO13693.1| S6 modification enzyme RimK [Xylella fastidiosa Dixon]
 gi|71730397|gb|EAO32478.1| S6 modification enzyme RimK [Xylella fastidiosa Ann-1]
 gi|167965954|gb|ACA12964.1| ribosomal protein S6 modification protein [Xylella fastidiosa M12]
          Length = 301

 Score = 42.0 bits (97), Expect = 0.100,   Method: Compositional matrix adjust.
 Identities = 49/208 (23%), Positives = 98/208 (47%), Gaps = 24/208 (11%)

Query: 70  AILELLEIPYTHSGILASAL--SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS-- 125
           A+L   E+  T+S   + A+  S DK+R+ Q++++ G+ + P  +      D+Q L+S  
Sbjct: 75  AVLRQFELMGTYSPNPSDAILRSRDKLRAHQLLAAQGIDM-PMTVFGDNPDDTQDLLSML 133

Query: 126 --PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV---DGIELTCG 180
             PP+V+K  +G    G+I+ +K+ S    L+++    + +  L+++++   D  +L C 
Sbjct: 134 GPPPHVVKLNEGAQGKGVILSEKN-SASRGLVEALRGLYAN-FLVQEFISEADSADLRCF 191

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V+G+  +          DF S         + H+  +       +E Q +A  +  A+G 
Sbjct: 192 VVGNQVVATMRRQAADGDFRS---------NLHLGGSATAATASEEEQEVAVRSAHALGL 242

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGM 268
             ++  D +     R    LE+N  PG+
Sbjct: 243 T-VAGVDLIRS--RRGPLVLEVNPTPGL 267


>gi|284517204|gb|ADB92102.1| D-alanyl-D-alanine ligase [Paenibacillus popilliae]
          Length = 65

 Score = 42.0 bits (97), Expect = 0.10,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 1/55 (1%)

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           ++A+GC+G+SR D       R +   E+N  PG T  S +P M A AG +   L+
Sbjct: 2   YKALGCKGLSRVDMFLQENGR-IILNEVNTLPGFTAYSRYPRMMAAAGMTLSGLI 55


>gi|71405261|ref|XP_805264.1| 3-methylcrotonyl-CoA carboxylase [Trypanosoma cruzi strain CL
           Brener]
 gi|70868604|gb|EAN83413.1| 3-methylcrotonyl-CoA carboxylase, putative [Trypanosoma cruzi]
          Length = 679

 Score = 42.0 bits (97), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 40/185 (21%), Positives = 77/185 (41%), Gaps = 19/185 (10%)

Query: 93  KMRSKQVVSSCGVPVCPSILVNRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQ 148
           K  SK+++ + GVPV P       + +        I  P +IK + GG   G+ ++K   
Sbjct: 126 KSESKRIMEAAGVPVVPGYYGEDQSFECLCEEAKKIGFPVLIKAVSGGGGKGMKIVKSVD 185

Query: 149 SIPLDL----LQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYE 203
              L L     +S ++   D++++E+YV     + C +  D   +          F+  +
Sbjct: 186 EFKLMLESAKRESMNFFKDDRVILERYVTQPRHIECQIFFDKFGNGV-------FFFERD 238

Query: 204 LKYSSLNSTHVLPAKIPL---DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260
                 +   V  A  P    D+   +  ++  A +A+G  G    +F+FD      F++
Sbjct: 239 CSVQRRHQKVVEEAPAPHITPDMRHRIGTVSLRAAKAVGYVGAGTVEFIFDTERNTFFFM 298

Query: 261 EINVQ 265
           E+N +
Sbjct: 299 EMNTR 303


>gi|190360216|sp|B0RPP2|RIMK_XANCB RecName: Full=Ribosomal protein S6 modification protein
          Length = 291

 Score = 42.0 bits (97), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 50/211 (23%), Positives = 98/211 (46%), Gaps = 24/211 (11%)

Query: 70  AILELLEIPYTHSGILASAL--SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS-- 125
           A+L   E   T++   + A+  S DK+R+ Q+++S G+ + P  +      D+Q L+S  
Sbjct: 75  AVLRQFEFMGTYTPNPSDAILRSRDKLRAHQLLASQGIDM-PVTVFGDNPDDTQDLLSML 133

Query: 126 --PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV---DGIELTCG 180
             PP+V+K  +G    G+I+ +K  S    ++++    + +  ++++++   +G +L C 
Sbjct: 134 GPPPHVVKLNEGAQGAGVILTEK-ASASRGVVEALRGLYAN-FIVQEFIGEAEGADLRCF 191

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V+GD  +          DF S       L  T  +    P +     Q +A  + +A+G 
Sbjct: 192 VVGDRVVAAMRRQAADGDFRS----NLHLGGTAAMAEASPQE-----QDVAVRSARALGL 242

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271
             ++  D +     R    LE+N  PG+  V
Sbjct: 243 -AVAGVDLIRS--QRGPLVLEVNSTPGLEGV 270


>gi|326317337|ref|YP_004235009.1| argininosuccinate lyase [Acidovorax avenae subsp. avenae ATCC
           19860]
 gi|323374173|gb|ADX46442.1| argininosuccinate lyase [Acidovorax avenae subsp. avenae ATCC
           19860]
          Length = 856

 Score = 42.0 bits (97), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 45/182 (24%), Positives = 78/182 (42%), Gaps = 27/182 (14%)

Query: 65  DGLVQ---AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ 121
           DG ++    + E L +P   S  +A  L  DK+   +V+ + GVP  P+    R   D  
Sbjct: 78  DGFIEMAARLSERLGLPCNPSAAIA--LCRDKLLLGEVLQARGVPY-PATREVRSAADMD 134

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
             I  P ++KP +G  S+G+ ++ + + +P    Q   W      + +++V+G E +   
Sbjct: 135 G-IGFPAIVKPRQGTGSIGVRLVTEARGMP--DAQEGPW------IAQRFVEGTEFSVET 185

Query: 182 MGDAS----LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
             D +    L VT   + +   +        L   HVLPA I  D  + +      A  A
Sbjct: 186 FSDGAGHHVLAVTRKYLTQPPHF--------LELAHVLPADISPDAARRIVETVTRALDA 237

Query: 238 IG 239
           +G
Sbjct: 238 VG 239


>gi|118474608|ref|YP_892697.1| biotin carboxylase [Campylobacter fetus subsp. fetus 82-40]
 gi|118413834|gb|ABK82254.1| acetyl-CoA carboxylase, biotin carboxylase [Campylobacter fetus
           subsp. fetus 82-40]
          Length = 445

 Score = 42.0 bits (97), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 48/203 (23%), Positives = 88/203 (43%), Gaps = 23/203 (11%)

Query: 77  IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKP 132
           I +    + A AL  DK ++KQV+   G+PV P    +   +D+       I  P ++K 
Sbjct: 102 IKFIGPSVAAMALMSDKSKAKQVMMRAGIPVVPGSDGSIQDIDAAKKLAREIGYPIIVKA 161

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWN--------HGD-QLLIEQYVDG-IELTCGVM 182
             GG   G+ V+++++      L+ S W+         GD  + +E+Y+     +   V+
Sbjct: 162 AAGGGGRGMRVVEREED-----LEKSFWSAESEAMSAFGDGTMYMEKYISNPRHIEVQVL 216

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
           GD   +V  I            K    +   +L  K   ++++     A  A +AIG  G
Sbjct: 217 GDEHGNVVHIGERDCSMQRRHQKLIEESPAVILDDKTRANLHE----TAVKATKAIGYAG 272

Query: 243 ISRSDFLFDPLSRKVFWLEINVQ 265
               +FL+D    K +++E+N +
Sbjct: 273 AGTFEFLYDQKDNKFYFIEMNTR 295


>gi|121602177|ref|YP_989057.1| acetyl-CoA carboxylase biotin carboxylase subunit [Bartonella
           bacilliformis KC583]
 gi|120614354|gb|ABM44955.1| acetyl-CoA carboxylase, biotin carboxylase [Bartonella
           bacilliformis KC583]
          Length = 446

 Score = 42.0 bits (97), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 46/219 (21%), Positives = 92/219 (42%), Gaps = 21/219 (9%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP----SILVN 114
           +G   E+     ILE   I +            DK+ +K+     G+P+ P    ++  +
Sbjct: 82  YGFLSENAKFADILEAHNITFIGPTAAHIRTMGDKIEAKKTAKQLGIPIVPGSDGAVTED 141

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN----HGDQLLIEQ 170
                  H I  P +IK   GG   G+ V++ ++ + + L  + S      + D + IE+
Sbjct: 142 ADAFRIAHEIGYPVIIKASAGGGGRGMKVVRSEKELSVALHTARSEAGAAFNDDSVYIEK 201

Query: 171 YVDG---IELTCGVMGDASLDVTEIAVPKSDFYSYELK-YSSLNSTHVLPAKIPLDIYKE 226
           Y++    IE+   VMGD + +   +            K +   NS  +  +K      K+
Sbjct: 202 YLEKPRHIEIQ--VMGDGAGNAIHLGERDCSLQRRHQKVWEEANSPALDESK-----RKK 254

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +  +   A   +G RG    +FL++  + + +++E+N +
Sbjct: 255 IGDIVANACAKLGYRGAGTIEFLYE--NSEFYFIEMNTR 291


>gi|260220383|emb|CBA27867.1| hypothetical protein Csp_A04420 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 811

 Score = 42.0 bits (97), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 42/197 (21%), Positives = 79/197 (40%), Gaps = 19/197 (9%)

Query: 54  AFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
           +  +  GN  + G   A   +       +  +A  ++ DK  +K ++ SCGVPV    LV
Sbjct: 203 SIRLTEGNLVQLGYGIAQRRIWTAETDQTSAIAEEIASDKDLTKSLLKSCGVPVPEGTLV 262

Query: 114 N--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
           N      ++   I  P  +KP  G    G+ +   D++        +    G  +++E++
Sbjct: 263 NSPEKAWEAAQDIGLPVAVKPYDGNHGRGVTLDLSDKASIETAFHVAKEQSGGSVIVEKF 322

Query: 172 VDGIE---LTCG-------------VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215
           + G E   L  G             V+GD +  VTE+   + +      +   L  + + 
Sbjct: 323 IPGNEHRLLVVGKRVVAAARGESAWVIGDGTSTVTELVNAQINTDPRRGEAEELPLSPIE 382

Query: 216 PAKIPLDIYKEVQRLAF 232
           P K P ++  E++R   
Sbjct: 383 PEKSP-EVQLELRRAGL 398


>gi|157870774|ref|XP_001683937.1| hypothetical protein [Leishmania major strain Friedlin]
 gi|68127004|emb|CAJ05423.1| conserved hypothetical protein [Leishmania major strain Friedlin]
          Length = 1118

 Score = 42.0 bits (97), Expect = 0.11,   Method: Composition-based stats.
 Identities = 68/263 (25%), Positives = 111/263 (42%), Gaps = 31/263 (11%)

Query: 29  AGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIP-YTHSGILAS 87
           A   + +ID  R+V  ++   K D+ FN+  G   E      ++E LE      +G  + 
Sbjct: 598 ADVSMKKIDSYRTVRKLVTSSKYDVFFNLCDGGRDEKRAGVDVVEALEEQNAAFTGTDSR 657

Query: 88  ALSMDKMRSKQVVSSCGVPVCPSILVNR---FTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
                K+  K +V S GV V   +L++         +HL   P ++K L G +S+GI   
Sbjct: 658 GFEPSKIDMKLMVGSSGVKVPNFVLLSNAESLAKKCRHL-KFPVIVKHLSGYASVGI--Q 714

Query: 145 KKDQSIPLDLLQS------SSWNHGDQLLIEQYVDGIELTCGVMGD-ASLDVTEIAVP-- 195
           K  +   LD L++        +NH    L+E+++ G E T     D  S    ++  P  
Sbjct: 715 KDSRCDTLDQLRTKVRGFIKEYNHA---LVEEFIRGREGTVLACADPGSPFGVKVFKPLM 771

Query: 196 ------KSDFYSYELKYS---SLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI-GCRGISR 245
                   DF  +E K++      +   L +  P   Y  +  +A  A + I    G  R
Sbjct: 772 FNFLQNNDDFAYFEKKWTMECGDQAYGFLASSDP--AYTAITEMARNAFKYIMNGVGYGR 829

Query: 246 SDFLFDPLSRKVFWLEINVQPGM 268
            DF  D L+ + ++LEIN   GM
Sbjct: 830 VDFRIDELTGEPYFLEINPNCGM 852


>gi|21243979|ref|NP_643561.1| ribosomal protein S6 modification protein [Xanthomonas axonopodis
           pv. citri str. 306]
 gi|21109593|gb|AAM38097.1| ribosomal protein S6 modification protein [Xanthomonas axonopodis
           pv. citri str. 306]
          Length = 248

 Score = 42.0 bits (97), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 35/141 (24%), Positives = 74/141 (52%), Gaps = 12/141 (8%)

Query: 70  AILELLEIPYTHSGILASAL--SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS-- 125
           A+L  LE   T++   + A+  S DK+R+ Q++++ G+ + P  +      D+Q L+S  
Sbjct: 75  AVLRQLEFMGTYTPNPSDAILRSRDKLRAHQLLAAQGIDM-PVTVFGDNPDDTQDLLSML 133

Query: 126 --PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV---DGIELTCG 180
             PP+V+K  +G    G+I+ +K  S    ++++    + +  ++++++   +G +L C 
Sbjct: 134 GPPPHVVKLNEGAQGAGVILTEK-ASASRGVVEALRGLYAN-FIVQEFIGEAEGADLRCF 191

Query: 181 VMGDASLDVTEIAVPKSDFYS 201
           V+GD  +        + DF S
Sbjct: 192 VVGDKVVAAMRRQAAEGDFRS 212


>gi|188990475|ref|YP_001902485.1| ribosomal protein S6 modification protein [Xanthomonas campestris
           pv. campestris str. B100]
 gi|167732235|emb|CAP50427.1| ribosomal protein S6 modification protein [Xanthomonas campestris
           pv. campestris]
          Length = 301

 Score = 42.0 bits (97), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 50/211 (23%), Positives = 98/211 (46%), Gaps = 24/211 (11%)

Query: 70  AILELLEIPYTHSGILASAL--SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS-- 125
           A+L   E   T++   + A+  S DK+R+ Q+++S G+ + P  +      D+Q L+S  
Sbjct: 85  AVLRQFEFMGTYTPNPSDAILRSRDKLRAHQLLASQGIDM-PVTVFGDNPDDTQDLLSML 143

Query: 126 --PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV---DGIELTCG 180
             PP+V+K  +G    G+I+ +K  S    ++++    + +  ++++++   +G +L C 
Sbjct: 144 GPPPHVVKLNEGAQGAGVILTEK-ASASRGVVEALRGLYAN-FIVQEFIGEAEGADLRCF 201

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V+GD  +          DF S       L  T  +    P +     Q +A  + +A+G 
Sbjct: 202 VVGDRVVAAMRRQAADGDFRS----NLHLGGTAAMAEASPQE-----QDVAVRSARALGL 252

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271
             ++  D +     R    LE+N  PG+  V
Sbjct: 253 -AVAGVDLIRS--QRGPLVLEVNSTPGLEGV 280


>gi|71404424|ref|XP_804919.1| 3-methylcrotonyl-CoA carboxylase [Trypanosoma cruzi strain CL
           Brener]
 gi|70868121|gb|EAN83068.1| 3-methylcrotonyl-CoA carboxylase, putative [Trypanosoma cruzi]
          Length = 679

 Score = 42.0 bits (97), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 40/182 (21%), Positives = 80/182 (43%), Gaps = 13/182 (7%)

Query: 93  KMRSKQVVSSCGVPVCPSILVNRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQ 148
           K  SK+++ + GVPV P       + +        I  P +IK + GG   G+ ++K   
Sbjct: 126 KSESKRIMEAAGVPVVPGYYGEDQSFECLCEEAKKIGFPVLIKAVSGGGGKGMKIVKSVD 185

Query: 149 SIPLDL----LQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYE 203
              L L     +S ++   D++++E+YV     + C +  D   +   +   + D  S +
Sbjct: 186 EFKLMLESAKRESMNFFKDDRVILERYVTQPRHIECQIFFDKFGN--GVFFFERD-CSVQ 242

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            ++  +      P   P D+   +  ++  A +A+G  G    +F+FD      F++E+N
Sbjct: 243 RRHQKVIEEAPAPHITP-DMRHRIGTVSLRAAKAVGYVGAGTVEFIFDTERNTFFFMEMN 301

Query: 264 VQ 265
            +
Sbjct: 302 TR 303


>gi|262199308|ref|YP_003270517.1| hypothetical protein Hoch_6149 [Haliangium ochraceum DSM 14365]
 gi|262082655|gb|ACY18624.1| conserved hypothetical protein [Haliangium ochraceum DSM 14365]
          Length = 441

 Score = 41.6 bits (96), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 54/214 (25%), Positives = 94/214 (43%), Gaps = 32/214 (14%)

Query: 67  LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR-FTMDSQHLIS 125
           L Q + + LE+P    G  AS +  DK   +  +S+      P+  V     ++S   ++
Sbjct: 102 LSQVVADYLELP--SPGWRASTVCRDKSLQRHYLSTW----SPAFHVRSPGDIESFDALA 155

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ--LLIEQYVDGIELTCGVMG 183
            PYV+KP +   S G++V++       D L+ +  ++ D   LL E+Y+DG E +   + 
Sbjct: 156 FPYVVKPARRSGSSGVVVVRDH-----DGLRRALPDYADDEILLQEKYIDGAEFSVESLV 210

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK--------IPLDIYKEV-QRLAFLA 234
                +      K   +S+E     +   H +PA+          L+I K++  RL F  
Sbjct: 211 QGGAILFSCVAEKRTNHSHEGGDYFVEMAHTVPAQNLSDDMRARLLEINKDILTRLDFRD 270

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQ-PG 267
                  GI+ ++F FD      F +EI  + PG
Sbjct: 271 -------GIAHAEFKFD-REANPFLMEIAARNPG 296


>gi|309389677|gb|ADO77557.1| ATP-dependent carboxylate-amine ligase domain protein ATP-grasp
           [Halanaerobium praevalens DSM 2228]
          Length = 414

 Score = 41.6 bits (96), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 36/151 (23%), Positives = 74/151 (49%), Gaps = 12/151 (7%)

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ-HLISPPYVIKPLKGGSSLGIIVI 144
           A A++  K+   + +SS G+P     ++ +   DS+   ++ PYV+KPL      G+  +
Sbjct: 97  AKAVTNKKIMKNKFLSS-GIPTVNFKIIKKNFFDSELKDLNSPYVVKPLDSQGQRGVFKL 155

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC-GVMGDAS---LDVTEIAVPKSDFY 200
                I     +  S++  +++L+E+Y    E+T  G + +     L VT+    +SD  
Sbjct: 156 NSIAQIREKFEEVLSFSREEEILVEEYYLSDEITVSGWVKNGETHLLTVTDRLNFESDI- 214

Query: 201 SYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
                +  + S+H+ P+K   D ++E++ L+
Sbjct: 215 -----HLGICSSHLFPSKYLQDYFREIKALS 240


>gi|329937927|ref|ZP_08287409.1| acetyl/propionyl CoA carboxylase subunit alpha [Streptomyces
           griseoaurantiacus M045]
 gi|329302884|gb|EGG46773.1| acetyl/propionyl CoA carboxylase subunit alpha [Streptomyces
           griseoaurantiacus M045]
          Length = 649

 Score = 41.6 bits (96), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 48/96 (50%), Gaps = 8/96 (8%)

Query: 86  ASALSMDKMRSKQVVSSCGVPVCP----SILVNRFTMDSQHLISPPYVIKPLKGGSSLGI 141
           A AL  DK+R+K+ V + GVPV P    S L +     +   I  P ++KP  GG   G+
Sbjct: 109 AIALMGDKIRAKETVRAAGVPVVPGSSGSGLTDEELAAAAREIGAPVLLKPSAGGGGKGM 168

Query: 142 IVIKKDQSIPLDLLQSSSWNHG----DQLLIEQYVD 173
            +++   ++  ++  +          D LL+E+++D
Sbjct: 169 RLVRDTATLAEEIAAARREARASFGDDTLLVERWID 204


>gi|298713878|emb|CBJ33757.1| Acetyl-CoA carboxylase, partial [Ectocarpus siliculosus]
          Length = 798

 Score = 41.6 bits (96), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 29/48 (60%)

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
           P  +P  ++KE++R A    Q IG RG    ++L++P S   F+LE+N
Sbjct: 230 PTIVPPAMFKEMERAAQRLTQNIGYRGAGTVEYLYNPESNSFFFLELN 277


>gi|207110562|ref|ZP_03244724.1| D-alanyl-alanine synthetase A [Helicobacter pylori HPKX_438_CA4C1]
          Length = 97

 Score = 41.6 bits (96), Expect = 0.15,   Method: Composition-based stats.
 Identities = 26/84 (30%), Positives = 46/84 (54%), Gaps = 3/84 (3%)

Query: 70  AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN-RFTMDSQHLI--SP 126
           ++LE   I +    I AS LS +K  +K      G+     +LVN +   ++  LI  + 
Sbjct: 3   SLLEFYRIAFIGPRIEASVLSYNKYLTKLYAKDLGIKTLDHVLVNEKNRANALDLIGFNF 62

Query: 127 PYVIKPLKGGSSLGIIVIKKDQSI 150
           P+++KP   GSSLG+ V+K+++ +
Sbjct: 63  PFIVKPSNAGSSLGVNVVKEEKEL 86


>gi|194366956|ref|YP_002029566.1| alpha-L-glutamate ligase [Stenotrophomonas maltophilia R551-3]
 gi|226694902|sp|B4STS0|RIMK_STRM5 RecName: Full=Ribosomal protein S6 modification protein
 gi|194349760|gb|ACF52883.1| alpha-L-glutamate ligase, RimK family [Stenotrophomonas maltophilia
           R551-3]
          Length = 292

 Score = 41.6 bits (96), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 43/186 (23%), Positives = 88/186 (47%), Gaps = 22/186 (11%)

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIK 145
           S DK+R+ Q++++ G+ + P  +      D+  L+S    PP+V+K  +G    G+I+ +
Sbjct: 97  SRDKLRAHQLLAAKGIDM-PVTVFGDNPDDTVDLLSMLGPPPHVVKLNEGTQGRGVILTE 155

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYV---DGIELTCGVMGDASLDVTEIAVPKSDFYSY 202
           K  S    ++++    + +  L+++++    G +L C V+GD  +   +   P+ DF S 
Sbjct: 156 K-ASASRGIVEALRGLYAN-FLMQEFIGEAKGADLRCFVVGDQVVASMQRQAPEGDFRS- 212

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
                   + H     +     +  Q++A  + +A+G   +   D +    +R    LEI
Sbjct: 213 --------NLHAGGTAVAAKASRAEQQVAVRSAKALGL-SVCGVDLIRS--ARGPLVLEI 261

Query: 263 NVQPGM 268
           N  PG+
Sbjct: 262 NSTPGL 267


>gi|295110623|emb|CBL24576.1| Carbamoylphosphate synthase large subunit (split gene in MJ)
           [Ruminococcus obeum A2-162]
          Length = 427

 Score = 41.6 bits (96), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 31/139 (22%), Positives = 65/139 (46%), Gaps = 15/139 (10%)

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV-M 182
           +S P + KP+    S GI +I  +  +   + +S+ +   D++L+E+Y DG E      +
Sbjct: 143 LSYPLISKPMDKYGSRGIYIIHDENELTEQIARSAEFTDLDEVLVEEYNDGFEFNMMTWV 202

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL--AFLAHQAIGC 240
            D  ++V  I++   +    E     +++ +V P++    +Y+  + L  +++AH     
Sbjct: 203 NDGKVNV--ISIADREKTQPEANMLPISTRNVYPSRFLSHVYEPAKDLLQSYIAHTGQ-- 258

Query: 241 RGISRSDFLFDPLSRKVFW 259
                   +  PLS + FW
Sbjct: 259 --------MDGPLSMQFFW 269


>gi|207722336|ref|YP_002252772.1| hypothetical protein RSMK04933 [Ralstonia solanacearum MolK2]
 gi|206587513|emb|CAQ18095.1| hypothetical protein RSMK04933 [Ralstonia solanacearum MolK2]
          Length = 390

 Score = 41.6 bits (96), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 82/338 (24%), Positives = 126/338 (37%), Gaps = 78/338 (23%)

Query: 18  SGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF--GEDGLVQAILELL 75
           SG      L DAGF            L+  H  PD A   L   F   EDG+ QAI    
Sbjct: 57  SGADIGHCLRDAGFD-----------LLTPHAAPDPA-RALDWVFPDTEDGIAQAIGRGA 104

Query: 76  EIPYTHSGIL-----------------ASALSMD---KMRSKQVVSSCGVPVCPSILVNR 115
            + + ++ +                  A AL  D   K  +   +   G+PV  S L+ R
Sbjct: 105 TMLWANTVLFRGHPIECRAGAAWIVGQAPALQQDADDKFATNARLRRHGLPVAASSLIGR 164

Query: 116 -----------FTMDSQHL--ISPPYVIKPLKGGSSLGIIVIK---KDQSIPLDLLQSSS 159
                         D  H   ++ P VIKP++G  S G+ ++      Q     LL S +
Sbjct: 165 EASGSLPPLEALREDDLHRAGLAFPLVIKPVRGRGSEGVTLVHDLPSMQRAAAGLLDSGA 224

Query: 160 WNHGDQLLIEQYVDGIELTCGVMGDA-------SLDVTEIAVPKSDFY------SYELKY 206
           +  GD L+ E ++ G ELT  V+          S D      P   F        Y    
Sbjct: 225 F--GDALIAETFLAGEELTVTVLPRQDDLPAAFSSDTASALPPVRRFNHVDGVAPYNGAV 282

Query: 207 SSLNSTHVLPAKIPLDI-YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL-EINV 264
           +   ++  LP +  +    + + R   LA+  +G R   R D   D  +   + L ++N+
Sbjct: 283 AVTRNSVALPVEAAMAPEARALIRACLLAYDVVGARAPIRIDCRAD--AHGAYQLFDLNM 340

Query: 265 QPGMTPV---------SIFPEMAAYAGYSFRELLLWMV 293
           +P MT           S+    A   G+ +RELL+ M+
Sbjct: 341 KPNMTGAGRPGREDQDSLSALAARAVGWDYRELLVRMM 378


>gi|314922658|gb|EFS86489.1| conserved domain protein [Propionibacterium acnes HL001PA1]
          Length = 123

 Score = 41.2 bits (95), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 29/103 (28%), Positives = 42/103 (40%), Gaps = 1/103 (0%)

Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
           P    Y Y   Y+   +    PA I     +    +A +  + +   GISR D + D   
Sbjct: 18  PVGGVYDYSAMYTGGETRLTAPADISGTAAQTATAMARVVQKELDFSGISRVDAIVDESG 77

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           R V  LE    PGMT  S+ P     AG    E+   +V+D +
Sbjct: 78  RPVL-LEAGAAPGMTATSLVPVAMKAAGLDLGEVCSRLVDDVA 119


>gi|229002475|ref|ZP_04160564.1| Argininosuccinate lyase domain protein [Bacillus mycoides Rock3-17]
 gi|228758608|gb|EEM07742.1| Argininosuccinate lyase domain protein [Bacillus mycoides Rock3-17]
          Length = 393

 Score = 41.2 bits (95), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 37/166 (22%), Positives = 69/166 (41%), Gaps = 26/166 (15%)

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ-------LLIEQYV 172
           S ++I  P ++KP+    S G+   K    +    L+  SW    +       +L+E+++
Sbjct: 124 SLNIIGLPCIVKPVDDSGSNGVRFCKTVAEVKEQTLEILSWKKNSRGQSTVQTVLLEEFI 183

Query: 173 DGIELTCGVMG----DASLDVTE---IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
           D  E +  +         + +TE   I  P   F  ++         HV PAK+P D+ +
Sbjct: 184 DAPEYSVEIFSFEGKGKCVGITEKKLIGFP--HFVEHQ---------HVFPAKLPADVTR 232

Query: 226 EVQRLAFLAHQAIG-CRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270
           E+Q     A +A+G   G + ++    P    +  +   +  GM P
Sbjct: 233 EIQNTVEDALKAVGITNGPTHTEVKLTPQGCAIIEINARLAGGMIP 278


>gi|296272375|ref|YP_003655006.1| alpha-L-glutamate ligase [Arcobacter nitrofigilis DSM 7299]
 gi|296096549|gb|ADG92499.1| alpha-L-glutamate ligase, RimK family [Arcobacter nitrofigilis DSM
           7299]
          Length = 310

 Score = 41.2 bits (95), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 46/209 (22%), Positives = 99/209 (47%), Gaps = 27/209 (12%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS----PP 127
            E++++ ++ SG LA   S DK+RS QV+S   V +  ++  +  +  ++ +I+     P
Sbjct: 80  FEMMDV-FSTSGNLAITRSRDKLRSLQVLSKNDVDMPKTVFASNKS-SAKDVIALSGGAP 137

Query: 128 YVIKPLKGGSSLGIIVIKKDQSIP--LDLLQSSSWNHGDQLLIEQYVD---GIELTCGVM 182
            V+K L+G   +G++++  +++    LD       N    LL+++Y++   G ++   V+
Sbjct: 138 LVLKILEGTQGVGVVLLDSEKAAKSVLDAFYGMDVN----LLVQEYIEEAGGADIRAFVV 193

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
               +   +    + DF S         + H   + I   + ++ +  A  A +A+G  G
Sbjct: 194 NGEVVGAMKRQGAEGDFRS---------NLHQGGSAIAHKLTRKEKSTAIAAAKAMGL-G 243

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPV 271
           +   D +  P +R    +E+N  PG+  +
Sbjct: 244 VCGVDMI--PSARGPLVMEVNSSPGLEGI 270


>gi|256371819|ref|YP_003109643.1| Carbamoyl-phosphate synthase L chain ATP- binding [Acidimicrobium
           ferrooxidans DSM 10331]
 gi|256008403|gb|ACU53970.1| Carbamoyl-phosphate synthase L chain ATP- binding [Acidimicrobium
           ferrooxidans DSM 10331]
          Length = 646

 Score = 41.2 bits (95), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 54/222 (24%), Positives = 95/222 (42%), Gaps = 22/222 (9%)

Query: 49  LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
           L P   F   H  F E  ++ A L  +  P       A AL  DK R+K  ++  GVP  
Sbjct: 78  LHPGYGFLSEHPGFAE-AVIAAGLTWIGPPPE-----AIALMGDKERAKAHMARAGVPTL 131

Query: 109 PSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG----D 164
           P+     F  D   ++ P  ++KP  GG   G+ V+++  ++   +  +     G    D
Sbjct: 132 PT-----FAPDDPDVVLP-VLVKPTAGGGGKGMDVVRERAALGAAIDAARRTAAGAFGDD 185

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           ++ +E++V+ G  +   V+ D    V      +        K      + VL A    D+
Sbjct: 186 RVFLERFVEVGRHVEIQVVADGHGAVVHCFERECSIQRRHQKVLEEAPSPVLDA----DL 241

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            + +   A  A +A+G RG+   +FL +P     ++LE+N +
Sbjct: 242 RERMGAAACAAARAVGYRGVGTVEFLLEP-DGSYWFLEMNTR 282


>gi|116328676|ref|YP_798396.1| dehydrogenase [Leptospira borgpetersenii serovar Hardjo-bovis L550]
 gi|116330667|ref|YP_800385.1| dehydrogenase [Leptospira borgpetersenii serovar Hardjo-bovis
           JB197]
 gi|116121420|gb|ABJ79463.1| Dehydrogenase [Leptospira borgpetersenii serovar Hardjo-bovis L550]
 gi|116124356|gb|ABJ75627.1| Dehydrogenase [Leptospira borgpetersenii serovar Hardjo-bovis
           JB197]
          Length = 760

 Score = 41.2 bits (95), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 39/213 (18%), Positives = 89/213 (41%), Gaps = 13/213 (6%)

Query: 68  VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPP 127
           V A+   L++P        +A +  KMR +   +   +P    +       ++   +  P
Sbjct: 91  VAAVANALDLPGIRYVDAEAASNKVKMRERLKRAGISLPGFAPVWSFSDAREALEFLKFP 150

Query: 128 YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG-DAS 186
            V+KP     + G+I ++  + +      +  ++   ++++E+Y+ G E++   +  + +
Sbjct: 151 LVMKPADNMGARGVIKVENREELQAAFKHAKKYSPTGEMILEEYMPGPEVSVDALTWNGN 210

Query: 187 LDVTEIA---VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR-G 242
             +T IA   + +  F+        +   H +P+ +   + KEV+ + F + +A+G   G
Sbjct: 211 FVITGIADRIIEREPFF--------IEMGHNMPSALSSSVLKEVEDVMFRSMKALGITIG 262

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275
             + D    P   KV  +   +  G      FP
Sbjct: 263 AGKGDIKVTPDGVKVGEVAARLSGGFMSAFTFP 295


>gi|147828391|emb|CAN70986.1| hypothetical protein VITISV_039270 [Vitis vinifera]
          Length = 222

 Score = 41.2 bits (95), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 39/145 (26%), Positives = 62/145 (42%), Gaps = 19/145 (13%)

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216
           +  ++L+ E +   +E+T GV+G      SL  +       D  S E K+      ++ P
Sbjct: 73  DXANRLIWEGHSRWVEVTVGVVGKRGSMHSLTPSVTVKESGDILSLEEKFQGGTGINLTP 132

Query: 217 AKIPLDIYKEV------QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270
              PL I  +       QR+  +A+  +   G SR D   +  S +V  +E+N  PGMTP
Sbjct: 133 P--PLSIISKAALESCKQRIELIAN-TLQLEGFSRIDAFVNVDSGEVLIIEVNTVPGMTP 189

Query: 271 VSIF------PEMAAYAGYSFRELL 289
            ++        E   Y    FR LL
Sbjct: 190 STVLIHQALAEEPPMYPHRFFRTLL 214


>gi|225437102|ref|XP_002273573.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|296085234|emb|CBI28729.3| unnamed protein product [Vitis vinifera]
          Length = 735

 Score = 41.2 bits (95), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 39/183 (21%), Positives = 79/183 (43%), Gaps = 13/183 (7%)

Query: 92  DKMRSKQVVSSCGVPVCPSILVNR----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147
           DK  SK+++ + GVP+ P    N     F       I  P +IKP  GG   G+ +++  
Sbjct: 147 DKSASKRIMGAAGVPLVPGYHGNEQDIDFMKSEGEKIGYPVLIKPTHGGGGKGMRIVQSP 206

Query: 148 QSIPLDLL---QSSSWNHG-DQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSY 202
                  L   + ++ + G + +L+E+Y+     +   + GD   +V  +        S 
Sbjct: 207 SEFVEAFLGAQREAAASFGINTILLEKYITKPRHIEVQIFGDKFGNVLHL---NERDCSV 263

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
           + ++  +      P  I  D    + + A  A +A+G       +F+ D +S + +++E+
Sbjct: 264 QRRHQKIIEEAPAP-NIVNDFRTHLGQAAVSAAKAVGYHNAGTVEFIVDTISGQFYFMEM 322

Query: 263 NVQ 265
           N +
Sbjct: 323 NTR 325


>gi|125975129|ref|YP_001039039.1| hypothetical protein Cthe_2647 [Clostridium thermocellum ATCC
           27405]
 gi|256003215|ref|ZP_05428207.1| protein of unknown function DUF201 [Clostridium thermocellum DSM
           2360]
 gi|281418450|ref|ZP_06249469.1| ATP-dependent carboxylate-amine ligase domain protein ATP-grasp
           [Clostridium thermocellum JW20]
 gi|125715354|gb|ABN53846.1| protein of unknown function DUF201 [Clostridium thermocellum ATCC
           27405]
 gi|255992906|gb|EEU02996.1| protein of unknown function DUF201 [Clostridium thermocellum DSM
           2360]
 gi|281407534|gb|EFB37793.1| ATP-dependent carboxylate-amine ligase domain protein ATP-grasp
           [Clostridium thermocellum JW20]
 gi|316939296|gb|ADU73330.1| ATP-dependent carboxylate-amine ligase domain protein ATP-grasp
           [Clostridium thermocellum DSM 1313]
          Length = 308

 Score = 41.2 bits (95), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 46/99 (46%), Gaps = 4/99 (4%)

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
           +LIE+Y+ G + T  V  D   +V  + V    +Y    +Y           K+  D   
Sbjct: 177 VLIEEYIKGNDCTVAVESDGK-NVRSLGVT---YYCKAKEYKLKGFEGAYSKKMSEDKES 232

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           E+ ++A    + +G  G+ R DF+ D  S KV+ LE+N 
Sbjct: 233 EICKIAVQIVEQLGFTGLLRIDFIVDECSEKVYVLELNT 271


>gi|21227545|ref|NP_633467.1| hypothetical protein MM_1443 [Methanosarcina mazei Go1]
 gi|20905925|gb|AAM31139.1| hypothetical protein MM_1443 [Methanosarcina mazei Go1]
          Length = 371

 Score = 41.2 bits (95), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 48/190 (25%), Positives = 81/190 (42%), Gaps = 34/190 (17%)

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145
           A  +S DK +SK+  +S G P                   PPY +KP    SS+G  +I 
Sbjct: 105 AYRISRDKRKSKEYFASIGTPT-----------PQDKPSEPPYFVKPPCESSSVGARIIH 153

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205
             +   L  L+         +LIE+YV+G  ++  V+GD +      AV K      +  
Sbjct: 154 DRKE--LKELEPG-------MLIEEYVEGEVVSLEVIGDGN----NFAVVKETLVHIDDT 200

Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           Y      H++    PL +    + L++     +  +GI   + +  PL  KV  +EI+ +
Sbjct: 201 Y----DCHMV---TPLPLDPSFRELSYSLAANLPLKGIMDVEAISGPLGLKV--IEIDAR 251

Query: 266 -PGMTPVSIF 274
            P  TP +++
Sbjct: 252 FPSQTPTAVY 261


>gi|313835192|gb|EFS72906.1| hypothetical protein HMPREF9621_02809 [Propionibacterium acnes
          HL037PA2]
 gi|314929164|gb|EFS92995.1| hypothetical protein HMPREF9607_00846 [Propionibacterium acnes
          HL044PA1]
 gi|314970886|gb|EFT14984.1| hypothetical protein HMPREF9622_01951 [Propionibacterium acnes
          HL037PA3]
          Length = 69

 Score = 41.2 bits (95), Expect = 0.20,   Method: Composition-based stats.
 Identities = 18/42 (42%), Positives = 28/42 (66%)

Query: 1  MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSV 42
          + VL GG+S +R++SL SG+  A AL   G +V + D+D S+
Sbjct: 5  VVVLAGGLSHQRDISLKSGRTVAQALRRVGHEVVEADIDSSL 46


>gi|302551602|ref|ZP_07303944.1| acetyl-CoA carboxylase, biotin carboxylase [Streptomyces
           viridochromogenes DSM 40736]
 gi|302469220|gb|EFL32313.1| acetyl-CoA carboxylase, biotin carboxylase [Streptomyces
           viridochromogenes DSM 40736]
          Length = 644

 Score = 41.2 bits (95), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 5/92 (5%)

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145
           A AL  DK+R+K+ V   GVPV P          ++ L   P ++KP  GG   G+ +++
Sbjct: 115 AIALMGDKIRAKETVREAGVPVVPGGRDPDLAEAAREL-GAPVLLKPSAGGGGKGMRLVR 173

Query: 146 K----DQSIPLDLLQSSSWNHGDQLLIEQYVD 173
                ++ I     ++ +    D LL+E+++D
Sbjct: 174 DLTRLEEEIASARREARASFGDDTLLVERWID 205


>gi|295096451|emb|CBK85541.1| SSU ribosomal protein S6P modification protein [Enterobacter
           cloacae subsp. cloacae NCTC 9394]
          Length = 266

 Score = 41.2 bits (95), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 50/209 (23%), Positives = 97/209 (46%), Gaps = 28/209 (13%)

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI----SPPYVIKPLKGGSSLG 140
           +A + + DK+RS Q+++  G+ + P   +     D+  LI      P VIK ++G   +G
Sbjct: 58  VAISRARDKLRSLQLLARQGIDL-PVTGIAHSPDDTSDLIDMVGGAPLVIKLVEGTQGIG 116

Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV---DGIELTCGVMGDASLDVTEIAVPKS 197
           +++ +  Q+    +      N    +L+++Y+   +G ++ C V+GD  +   E    + 
Sbjct: 117 VVLAETRQAAESVIDAFRGLNA--HILVQEYIKEANGCDIRCFVVGDEVVAAIERQAKEG 174

Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
           DF       S+L+   +  A++ L I +  + +A  A Q +G   ++  D L     R  
Sbjct: 175 DF------RSNLHRGGI--ARVAL-ISEREREIAVKAAQTLGL-DVAGVDLL--RAGRGP 222

Query: 258 FWLEINVQPGM------TPVSIFPEMAAY 280
             +E+N  PG+      T V I  +M A+
Sbjct: 223 LVMEVNASPGLEGVEKTTGVDIAGKMIAW 251


>gi|254495815|ref|ZP_05108727.1| glutathione synthase, ribosomal protein S6 modification protein
           [Legionella drancourtii LLAP12]
 gi|254354972|gb|EET13595.1| glutathione synthase, ribosomal protein S6 modification protein
           [Legionella drancourtii LLAP12]
          Length = 285

 Score = 41.2 bits (95), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 48/208 (23%), Positives = 98/208 (47%), Gaps = 24/208 (11%)

Query: 70  AILELLEIP--YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI--- 124
           A+L  LE    YT +  +A + S DK RS QV++  G+P+ P     +   D++ LI   
Sbjct: 59  AVLRHLETMGMYTVNESIAISRSRDKFRSLQVLARKGLPM-PLTSFAQSPDDTEDLIHMV 117

Query: 125 -SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD---GIELTCG 180
              P VIK L+G    G+I+    QS  + ++ +    H + +L++++++   G ++ C 
Sbjct: 118 GGAPLVIKLLEGTQGKGVILADSHQS-AVSIINAFKEMHAN-ILVQEFIEESRGTDIRCF 175

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V+G+  +   +    + +F +         + H     + + +  + + +A  A + +G 
Sbjct: 176 VVGEKVVGAVKRQAKEGEFRA---------NVHQGGKAVKVKLTPQERAIAVSAAKTMGL 226

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGM 268
           + ++  D +    +     LEIN  PG+
Sbjct: 227 K-VAGVDLIRS--NHGPLILEINSSPGL 251


>gi|290957731|ref|YP_003488913.1| ATP-binding biosynthetic protein [Streptomyces scabiei 87.22]
 gi|260647257|emb|CBG70362.1| putative ATP-binding biosynthetic enzyme [Streptomyces scabiei
           87.22]
          Length = 393

 Score = 40.8 bits (94), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 24/93 (25%), Positives = 46/93 (49%), Gaps = 6/93 (6%)

Query: 92  DKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS 149
           +K  ++ + +  GVP   S+     R    +   +  P VIKP     S+G+I I + + 
Sbjct: 85  NKATARTLFARHGVPSAASMTARTLREAERATRTLGFPAVIKPAAAAGSIGVIRIDRPEE 144

Query: 150 IPLDLLQSSSWNHGDQ----LLIEQYVDGIELT 178
           +P     +S+  H  +    +L+E+Y+DG E++
Sbjct: 145 LPAAFEFASAGAHRSREDSGVLVEEYLDGPEVS 177


>gi|326517844|dbj|BAK03840.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 550

 Score = 40.8 bits (94), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 46/193 (23%), Positives = 81/193 (41%), Gaps = 33/193 (17%)

Query: 92  DKMRSKQVVSSCGVPVCPS-------ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
           DK  SK+++ + GVP+ P        I + +   D    I  P +IKP  GG   G+ ++
Sbjct: 156 DKSASKRIMGAAGVPLVPGYHGADQDIELLKLEADK---IGYPVLIKPTHGGGGKGMRIV 212

Query: 145 KKDQSIPLDLLQSSSWNHG-----DQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSD 198
           +      +D ++S+          D LLIE+Y+     +   V GD   +   +      
Sbjct: 213 QGPDDF-VDSVRSAQREAAASFGIDTLLIEKYITQPRHIEVQVFGDKHGNAIHL------ 265

Query: 199 FYSYELKYSSLNSTHV-----LPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
              YE +  SL   H       PA  +  +    +   A  A +A+G       +F+ D 
Sbjct: 266 ---YE-RDCSLQRRHQKIIEEAPAPNVTTEFRTHIGEAAVSAAKAVGYYSAGTVEFIVDT 321

Query: 253 LSRKVFWLEINVQ 265
           LS + +++E+N +
Sbjct: 322 LSGEFYFMEMNTR 334


>gi|16330482|ref|NP_441210.1| cyanophycin synthetase [Synechocystis sp. PCC 6803]
 gi|8134384|sp|P73833|CPHA_SYNY3 RecName: Full=Cyanophycin synthetase; AltName: Full=Cyanophycin
           synthase
 gi|1652973|dbj|BAA17890.1| slr2002 [Synechocystis sp. PCC 6803]
          Length = 873

 Score = 40.8 bits (94), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 51/102 (50%), Gaps = 10/102 (9%)

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP----PYVIKPLKG 135
           +HSGIL   L+ DK  +K ++   G+PV     +  F  D +  I+     P VIKPL G
Sbjct: 207 SHSGILGVELACDKEGTKTILQDAGIPVPRGTTIQYFD-DLEEAINDVGGYPVVIKPLDG 265

Query: 136 GSSLGIIVIKK--DQSI-PLDLLQSSSWNHGDQLLIEQYVDG 174
               GI +  +  +++I   DL    S +    +++E+Y +G
Sbjct: 266 NHGRGITINVRHWEEAIAAYDLAAEESKSR--SIIVERYYEG 305


>gi|190575621|ref|YP_001973466.1| putative ribosomal protein S6 modification protein
           [Stenotrophomonas maltophilia K279a]
 gi|226694903|sp|B2FSC4|RIMK_STRMK RecName: Full=Ribosomal protein S6 modification protein
 gi|190013543|emb|CAQ47178.1| putative ribosomal protein S6 modification protein
           [Stenotrophomonas maltophilia K279a]
          Length = 292

 Score = 40.8 bits (94), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 42/186 (22%), Positives = 88/186 (47%), Gaps = 22/186 (11%)

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIK 145
           S DK+R+ Q++++ G+ + P  +      D+  L+S    PP+V+K  +G    G+I+ +
Sbjct: 97  SRDKLRAHQLLAAKGIDM-PVTVFGDNPDDTVDLLSMLGPPPHVVKLNEGTQGRGVILTE 155

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYV---DGIELTCGVMGDASLDVTEIAVPKSDFYSY 202
           K  S    ++++    + +  L+++++    G +L C V+GD  +   +   P+ DF S 
Sbjct: 156 K-ASASRGIVEALRGLYAN-FLMQEFIGEAKGADLRCFVVGDQVVASMQRQAPEGDFRS- 212

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
                   + H     +     +  Q++A  + +A+G   +   D +    +R    LE+
Sbjct: 213 --------NLHAGGTAVAAKASRAEQQVAVRSAKALGL-SVCGVDLIRS--ARGPLVLEV 261

Query: 263 NVQPGM 268
           N  PG+
Sbjct: 262 NSTPGL 267


>gi|166713157|ref|ZP_02244364.1| ribosomal protein S6 modification protein [Xanthomonas oryzae pv.
           oryzicola BLS256]
          Length = 305

 Score = 40.8 bits (94), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 48/211 (22%), Positives = 100/211 (47%), Gaps = 24/211 (11%)

Query: 70  AILELLEIPYTHSGILASAL--SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS-- 125
           A+L  LE   T++   + A+  + DK+R+ Q++++ G+ + P  +      D+Q L+S  
Sbjct: 85  AVLRQLEFMGTYTPNPSDAILRARDKLRAHQLLAAQGIDM-PVTVFGDNPDDTQDLLSML 143

Query: 126 --PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV---DGIELTCG 180
             PP+V+K  +G    G+I+ +K  S    ++++    + +  ++++++   +G +L C 
Sbjct: 144 GPPPHVVKLNEGAQGTGVILTEK-ASASRGVVEALRGLYAN-FIVQEFIGEAEGADLRCF 201

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V+GD  +        + DF S       L  T  +     L+     + +A  + +A+G 
Sbjct: 202 VVGDTVVAAMRRQAAEGDFRS----NLHLGGTAAVAEATELE-----REVAVRSARALGL 252

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271
             ++  D +     R    LE+N  PG+  V
Sbjct: 253 -AVAGVDLIRS--KRGPLVLEVNSTPGLEGV 280


>gi|39944808|ref|XP_361941.1| hypothetical protein MGG_04386 [Magnaporthe oryzae 70-15]
 gi|145021572|gb|EDK05701.1| hypothetical protein MGG_04386 [Magnaporthe oryzae 70-15]
          Length = 1854

 Score = 40.8 bits (94), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 41/185 (22%), Positives = 84/185 (45%), Gaps = 20/185 (10%)

Query: 93  KMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP------PYVIKPLKGGSSLGIIVIKK 146
           K R++++  + GVP  P   +     DS   ++       P +IK   GG  +G+ V   
Sbjct: 765 KHRAREIAQAAGVPTVPGTAL---LEDSAQAVAEAGRIGFPVMIKSTAGGGGIGLRVSHD 821

Query: 147 DQSIPLD---LLQSSSWNHGDQ-LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYS 201
            +S+  D   + + ++ N GD  + +E++V     +   V+GD +  V  + V + D   
Sbjct: 822 AESLKEDYESVQRLAASNFGDAGVFLERFVQRARHIEVQVLGDGNGAV--VTVGERD--- 876

Query: 202 YELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260
             L+  +       PA  +P ++ + +++ A     A+  R +   +F++D      F+L
Sbjct: 877 CSLQRRNQKVVEECPAFFVPHEVRQRMRKAAVDLAAAVSYRNVGTVEFIYDVDKEDFFFL 936

Query: 261 EINVQ 265
           E+N +
Sbjct: 937 EMNTR 941


>gi|302339420|ref|YP_003804626.1| ATP-dependent carboxylate-amine ligase domain protein ATP-grasp
           [Spirochaeta smaragdinae DSM 11293]
 gi|301636605|gb|ADK82032.1| ATP-dependent carboxylate-amine ligase domain protein ATP-grasp
           [Spirochaeta smaragdinae DSM 11293]
          Length = 555

 Score = 40.8 bits (94), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 39/185 (21%), Positives = 81/185 (43%), Gaps = 9/185 (4%)

Query: 68  VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPP 127
           V  + E L +P     + A+  + DK   ++ +S   V V   + +     +    +S P
Sbjct: 94  VARVAEKLTLPGIS--VKAAMAASDKALMRRTLSDANVRVPRFVQLADGEKEIPKELSYP 151

Query: 128 YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC-GVMGDAS 186
            V+KP+    + G+  +  D+ +   L  +  ++    +++E+++DG E +   ++    
Sbjct: 152 LVVKPVDNMGARGVRRVDNDEELSSALDDAFRFSRSGSVIVEEFLDGPEFSIDALVEKGQ 211

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC-RGISR 245
           +    IA     F  Y ++       H +P+  P D+ +EV+     A +AIG   G ++
Sbjct: 212 VRFCGIADRHITFAPYFVEMG-----HTIPSSAPADMIEEVKGEFLKAVEAIGIDNGAAK 266

Query: 246 SDFLF 250
            D  F
Sbjct: 267 GDVKF 271


>gi|242084122|ref|XP_002442486.1| hypothetical protein SORBIDRAFT_08g020810 [Sorghum bicolor]
 gi|241943179|gb|EES16324.1| hypothetical protein SORBIDRAFT_08g020810 [Sorghum bicolor]
          Length = 752

 Score = 40.8 bits (94), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 49/192 (25%), Positives = 84/192 (43%), Gaps = 31/192 (16%)

Query: 92  DKMRSKQVVSSCGVPVCPS-------ILVNRFTMDSQHLISPPYVIKPLKGGSSLGI-IV 143
           DK  SK+++ + GVP+ P        I + +   D    I  P +IKP  GG   G+ IV
Sbjct: 168 DKSASKRIMGAAGVPLVPGYHGADQDIELLKLEADK---IGYPVLIKPTHGGGGKGMRIV 224

Query: 144 IKKDQSIP--LDLLQSSSWNHG-DQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDF 199
            + D+ +   L   + ++ + G + LLIE+Y+     +   V GD   +           
Sbjct: 225 ERPDEFVDAVLSAQREAAASFGVNTLLIEKYITQPRHVEVQVFGDQHGNA---------I 275

Query: 200 YSYELKYSSLNSTHV-----LPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
           Y YE +  SL   H       PA  +  +    +   A  A +A+G       +F+ D L
Sbjct: 276 YLYE-RDCSLQRRHQKIIEEAPAPNVTAEFRSHIGGAAVSAAKAVGYYNAGTVEFIVDTL 334

Query: 254 SRKVFWLEINVQ 265
           S + +++E+N +
Sbjct: 335 SGEFYFMEMNTR 346


>gi|167854716|ref|ZP_02477495.1| ribosomal protein S6 modification protein [Haemophilus parasuis
           29755]
 gi|167854130|gb|EDS25365.1| ribosomal protein S6 modification protein [Haemophilus parasuis
           29755]
          Length = 301

 Score = 40.8 bits (94), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 45/188 (23%), Positives = 88/188 (46%), Gaps = 19/188 (10%)

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP--PYVIKPLKGGSSLGIIV 143
           A AL+ DK +S Q +++CG+PV  ++L+      ++ L     P VIK L G   +G++ 
Sbjct: 107 AFALARDKWQSLQRLAACGIPVPDTLLMGELYSVAEGLSQSGLPAVIKTLSGSQGVGVM- 165

Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYV---DGIELTCGVMGDASLDVTEIAVPKSDFY 200
           + ++ S  L LL++        LL + ++    G ++   V+GD  +   E      +F 
Sbjct: 166 LAENHSGALSLLETLKSAKVPSLL-QTFIAEAKGQDIRAFVIGDQVVATMERTGASGEFR 224

Query: 201 SYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260
           +   +  +  +  +  A+         Q++A  A +AIG   ++  D +     + +  L
Sbjct: 225 ANIHRGGTAQAIQLSDAE---------QKIAVQAAKAIGL-DVAGVDLIRS--QQGIMVL 272

Query: 261 EINVQPGM 268
           E+N  PG+
Sbjct: 273 EVNASPGL 280


>gi|332710219|ref|ZP_08430170.1| cyanophycin synthetase [Lyngbya majuscula 3L]
 gi|332350998|gb|EGJ30587.1| cyanophycin synthetase [Lyngbya majuscula 3L]
          Length = 892

 Score = 40.8 bits (94), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 33/66 (50%), Gaps = 5/66 (7%)

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP----PYVIKPLKG 135
            +SGIL   L+ DK  +KQ++   GVPV P     RF  D +  I      P VIKPL G
Sbjct: 207 NYSGILGVELACDKEGTKQILRDAGVPV-PRGTTIRFLDDLEGAIEDVGGYPIVIKPLNG 265

Query: 136 GSSLGI 141
               GI
Sbjct: 266 NHGRGI 271


>gi|330884072|gb|EGH18221.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. glycinea str.
           race 4]
          Length = 87

 Score = 40.8 bits (94), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 39/62 (62%), Gaps = 2/62 (3%)

Query: 82  SGILASALSMDKMRSKQVVSSCGVPV-CPSILVNRF-TMDSQHLISPPYVIKPLKGGSSL 139
           SG+LASAL+MDK+R+KQV  S G+     ++L N    + +   +  P ++KP   GSS+
Sbjct: 2   SGVLASALAMDKLRTKQVWQSLGLATPLHAVLGNESDCICAATELGFPLIVKPAHEGSSI 61

Query: 140 GI 141
           G+
Sbjct: 62  GM 63


>gi|108862934|gb|ABA99832.2| Methylcrotonoyl-CoA carboxylase alpha chain, mitochondrial
           precursor, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 674

 Score = 40.8 bits (94), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 42/189 (22%), Positives = 83/189 (43%), Gaps = 25/189 (13%)

Query: 92  DKMRSKQVVSSCGVPVCPSILVNRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKD 147
           DK  SK+++ + GVP+ P        ++      + I  P +IKP  GG   G+ ++++ 
Sbjct: 152 DKSASKRIMGAAGVPLVPGYHGAEQDIELLKLEANKIGYPVLIKPTHGGGGKGMRIVQRP 211

Query: 148 QSIPLDLL---QSSSWNHG-DQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSY 202
           +     +L   + ++ + G + LL+E+Y+     +   + GD   +V  +         Y
Sbjct: 212 EDFVDSVLSAQREAAASFGINTLLVEKYITQPRHIEVQIFGDQHGNVIHL---------Y 262

Query: 203 ELKYSSLNSTHV-----LPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256
           E +  SL   H       PA  +       +   A  A +A+G       +F+ D LS +
Sbjct: 263 E-RDCSLQRRHQKIIEEAPAPNVTAQFRSHIGEAAVSAAKAVGYYSAGTVEFIVDTLSGE 321

Query: 257 VFWLEINVQ 265
            +++E+N +
Sbjct: 322 FYFMEMNTR 330


>gi|67901552|ref|XP_681032.1| hypothetical protein AN7763.2 [Aspergillus nidulans FGSC A4]
 gi|40742361|gb|EAA61551.1| hypothetical protein AN7763.2 [Aspergillus nidulans FGSC A4]
          Length = 1057

 Score = 40.8 bits (94), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 57/245 (23%), Positives = 108/245 (44%), Gaps = 28/245 (11%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMD 92
           +D++  V LV  H     A + +H  +G   E       ++ L +     G  A   + D
Sbjct: 106 LDIELLVRLVQQH-----AIDAIHPGYGFLSESAEFARRMQDLGVIVIGPGWEALDRTGD 160

Query: 93  KMRSKQVVSSCGVPVCPSILVNRFTMDSQ---------HLISPPYVIKPLKGGSSLGIIV 143
           K+R+KQ+     VPV PS+  +  T  +          H +  P +IK + GG   GI +
Sbjct: 161 KLRAKQLAVENNVPVLPSLEYDMATPRATGLGKIKSFAHNVGYPVMIKAVDGGGGRGIRL 220

Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQ-YVDGI-ELTCGVMGDASLDVTEIAVPKSDFYS 201
           + +D  +   +  S++ +    + +E+  +DG   +   ++GD   DV  +   + D  S
Sbjct: 221 VHRDDDLGHAVRASAAESPSQTVFVEKAAIDGFHHIEIQIVGDGK-DVQHLW--ERDC-S 276

Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA---HQAIGCRGISRSDFLFDPLSRKVF 258
            + ++  +    + P+ I     + V R+A  A    +AI  R +   +FL +    + +
Sbjct: 277 VQRRFQKI--VEIAPSLIRDRNQELVSRIADAAVRMMKAIRYRSLGTVEFLVNEQLNEFY 334

Query: 259 WLEIN 263
           +LEIN
Sbjct: 335 FLEIN 339


>gi|134293847|ref|YP_001117583.1| argininosuccinate lyase [Burkholderia vietnamiensis G4]
 gi|134137004|gb|ABO58118.1| Argininosuccinate lyase [Burkholderia vietnamiensis G4]
          Length = 860

 Score = 40.8 bits (94), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 32/138 (23%), Positives = 60/138 (43%), Gaps = 22/138 (15%)

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145
           A AL  DK+R +  +    VP   +  +   + D+   ++ P ++KP +G  S+G+ +++
Sbjct: 100 AVALCRDKLRLQDTLRDHSVPYPYTTAIE--SADAARKLTYPVIVKPRQGTGSIGVRLVE 157

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS----LDVTEIAVPKSDFYS 201
           ++Q  P           G   + ++++ G E +     DA     L VT   + K   + 
Sbjct: 158 REQDFP--------DTSGGAFICQRFIPGAEFSVESFSDADGHHVLAVTRKFLTKPPHF- 208

Query: 202 YELKYSSLNSTHVLPAKI 219
                  L   HVLPA +
Sbjct: 209 -------LELAHVLPADL 219


>gi|256378666|ref|YP_003102326.1| hypothetical protein Amir_4648 [Actinosynnema mirum DSM 43827]
 gi|255922969|gb|ACU38480.1| protein of unknown function DUF201 [Actinosynnema mirum DSM 43827]
          Length = 404

 Score = 40.8 bits (94), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 53/215 (24%), Positives = 98/215 (45%), Gaps = 19/215 (8%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGV-PVCPSIL-VNRFTMDSQHLISPPYVIKPL 133
           E+   H+   A  L  DK   +  ++  G+ PV  ++    +  +D+   I  P V KPL
Sbjct: 88  EVGIAHTSPEAIRLCKDKSALRGHLAEAGLSPVRFAVAHTGQEAVDAAGRIGFPLVCKPL 147

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD-------QLLIEQYVDGIELTCG-VMGDA 185
             G S+G++    +  +      +++   GD        +L+E+Y++G E +   V+ D 
Sbjct: 148 ALGGSIGVVRADDEAGLREAFAIAATAKAGDGTASKLAGVLLEEYLEGPEFSVDCVVWDG 207

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC-RGIS 244
                 +A     F  Y   +  L   HV+PA+ P     E  RL   AH+A+G  R ++
Sbjct: 208 VAHPLVVAEKVLGFPPY---FEELG--HVVPAE-PSPAIDEAVRLVREAHRAVGLDRLVT 261

Query: 245 RSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279
            ++F   P   ++  +EINV+ G   + +  ++A+
Sbjct: 262 HTEFRLTPDGPRI--IEINVRLGGDLIPLLGKLAS 294


>gi|297204798|ref|ZP_06922195.1| conserved hypothetical protein [Streptomyces sviceus ATCC 29083]
 gi|197712508|gb|EDY56542.1| conserved hypothetical protein [Streptomyces sviceus ATCC 29083]
          Length = 420

 Score = 40.8 bits (94), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 51/196 (26%), Positives = 86/196 (43%), Gaps = 30/196 (15%)

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147
           + +K   KQ   + GV    S LV   +  +D+   +  P VIKP   G S G+++    
Sbjct: 109 ARNKYAMKQAFLAAGVQAPDSRLVQSEQELLDAIESVGLPVVIKPYDFGGSGGVVLATTR 168

Query: 148 QSIPLDLLQS--------SSWN-HGDQLLIEQYVD-----GIELTCGVMGDASLDVTEIA 193
           +     L +S        SS+N  GD+ L+EQ++D      +E+ CG      L VTE  
Sbjct: 169 EEAVAGLAESKAVIAQYGSSFNILGDKYLVEQFIDSDDEVSVEVLCGAGRAQVLAVTEKY 228

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC-RGISRSDFLFDP 252
           +    +++           H++P+    D    +  LA  A  A+G  RG++  +  FD 
Sbjct: 229 LSPRPWFA--------EVAHLVPSHRTGDPV--LTDLAVRACTALGIDRGLAHVEIKFD- 277

Query: 253 LSRKVFW-LEINVQPG 267
            +    W +E+  +PG
Sbjct: 278 -ADGTAWVIEVAARPG 292


>gi|115489478|ref|NP_001067226.1| Os12g0605800 [Oryza sativa Japonica Group]
 gi|110810425|sp|Q2QMG2|MCCA_ORYSJ RecName: Full=Methylcrotonoyl-CoA carboxylase subunit alpha,
           mitochondrial; Short=MCCase subunit alpha; AltName:
           Full=3-methylcrotonyl-CoA carboxylase 1; AltName:
           Full=3-methylcrotonyl-CoA:carbon dioxide ligase subunit
           alpha; Flags: Precursor
 gi|108862933|gb|ABA99831.2| Methylcrotonoyl-CoA carboxylase alpha chain, mitochondrial
           precursor, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113649733|dbj|BAF30245.1| Os12g0605800 [Oryza sativa Japonica Group]
 gi|215768297|dbj|BAH00526.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222617434|gb|EEE53566.1| hypothetical protein OsJ_36794 [Oryza sativa Japonica Group]
          Length = 737

 Score = 40.8 bits (94), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 42/189 (22%), Positives = 83/189 (43%), Gaps = 25/189 (13%)

Query: 92  DKMRSKQVVSSCGVPVCPSILVNRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKD 147
           DK  SK+++ + GVP+ P        ++      + I  P +IKP  GG   G+ ++++ 
Sbjct: 152 DKSASKRIMGAAGVPLVPGYHGAEQDIELLKLEANKIGYPVLIKPTHGGGGKGMRIVQRP 211

Query: 148 QSIPLDLL---QSSSWNHG-DQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSY 202
           +     +L   + ++ + G + LL+E+Y+     +   + GD   +V  +         Y
Sbjct: 212 EDFVDSVLSAQREAAASFGINTLLVEKYITQPRHIEVQIFGDQHGNVIHL---------Y 262

Query: 203 ELKYSSLNSTHV-----LPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256
           E +  SL   H       PA  +       +   A  A +A+G       +F+ D LS +
Sbjct: 263 E-RDCSLQRRHQKIIEEAPAPNVTAQFRSHIGEAAVSAAKAVGYYSAGTVEFIVDTLSGE 321

Query: 257 VFWLEINVQ 265
            +++E+N +
Sbjct: 322 FYFMEMNTR 330


>gi|296808505|ref|XP_002844591.1| conserved hypothetical protein [Arthroderma otae CBS 113480]
 gi|238844074|gb|EEQ33736.1| conserved hypothetical protein [Arthroderma otae CBS 113480]
          Length = 668

 Score = 40.8 bits (94), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 31/127 (24%), Positives = 55/127 (43%), Gaps = 27/127 (21%)

Query: 98  QVVSSCGVPVCP---------SILVNRF---------------TMDSQHLISPPYVIKPL 133
           +V    G+P CP           L ++F               T+D ++ +  P ++KP 
Sbjct: 308 KVAQQFGLPTCPPEGLRTATNKYLTSKFVGHNAHHACSMDEALTIDRENELPYPLIVKPC 367

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG-VMGDASLDVTEI 192
            G SS G+  +   +++   +    +  HG + ++EQY DG E     V+ D  +  +EI
Sbjct: 368 DGWSSEGVSRVDSPEALTQAIRSIDTSRHGTEFVMEQYCDGPEFDANFVLLDGEVLFSEI 427

Query: 193 A--VPKS 197
              +PKS
Sbjct: 428 CDDLPKS 434


>gi|329925226|ref|ZP_08280169.1| ATP-grasp domain protein [Paenibacillus sp. HGF5]
 gi|328940059|gb|EGG36392.1| ATP-grasp domain protein [Paenibacillus sp. HGF5]
          Length = 391

 Score = 40.8 bits (94), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 49/219 (22%), Positives = 90/219 (41%), Gaps = 33/219 (15%)

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRF--TMDSQHLISPPYVIKPLKGGSSLGIIV 143
           ++ LS +K + KQ     GV     + V        +  ++SPP + K + GG+S GI+ 
Sbjct: 96  SALLSSNKWKMKQAFMKHGVRTARFLKVQTLQEAYSAFEVLSPPVIFKAVDGGASKGIVK 155

Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYE 203
           +     +             D  ++E++++G E   G       +  +  +P  DF  Y 
Sbjct: 156 VADMAHVEYAFETVRKDTKLDFFIVEEFIEGTEF--GAQAFVYDNQIQFIMPHGDFVFY- 212

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAF-----------LAHQAIGCRGISRSDFLFDP 252
              + +   H +P ++P    +EVQ+  F           L H AI       +DF+   
Sbjct: 213 -GDTGVPIGHYVPYELP----EEVQQDLFSQLKQSIEALELNHCAI------NADFILK- 260

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEM-AAYAGYSFRELLL 290
               V+ LEI  + G T     PE+ + + G+ + E ++
Sbjct: 261 -DGHVYVLEIGGRAGAT---CLPELVSTFYGFDYYEQII 295


>gi|302878822|ref|YP_003847386.1| cyanophycin synthetase [Gallionella capsiferriformans ES-2]
 gi|302581611|gb|ADL55622.1| cyanophycin synthetase [Gallionella capsiferriformans ES-2]
          Length = 856

 Score = 40.8 bits (94), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 45/184 (24%), Positives = 86/184 (46%), Gaps = 28/184 (15%)

Query: 22  CASALEDAGF-------KVSQIDVDRSVG-----LVLAHLKPDLAFNVL-HGNFGEDGLV 68
           CASALED  F       ++ ++D D  +G     +V A +K ++ +  L  G+  + G  
Sbjct: 121 CASALEDTPFDLPGALAQLRELDEDVRLGPSTGSIVEAAVKRNIPYRRLTEGSLVQFGWG 180

Query: 69  QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL----- 123
                +       S  +  A++ DK  +K+++ + GVPV P     R   D +       
Sbjct: 181 SRQRRIQAAETDLSSAIGEAIAQDKELTKKLLEAAGVPV-PQ---GRPVADIEDAWVAMC 236

Query: 124 -ISPPYVIKPLKGGSSLGIIV--IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            I+ P V+KPL G    G+ V  + ++    L++  +++     ++L+E+++ G +    
Sbjct: 237 EIAGPVVVKPLDGNQGKGVTVNIVTREH---LEIAYAAAAKISSEVLLERFIPGSDFRML 293

Query: 181 VMGD 184
           V+GD
Sbjct: 294 VVGD 297


>gi|261405317|ref|YP_003241558.1| phosphoribosylglycinamide synthetase, ATP-grasp (A)
           domain-containing protein [Paenibacillus sp. Y412MC10]
 gi|261281780|gb|ACX63751.1| Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain protein
           [Paenibacillus sp. Y412MC10]
          Length = 391

 Score = 40.8 bits (94), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 49/219 (22%), Positives = 90/219 (41%), Gaps = 33/219 (15%)

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRF--TMDSQHLISPPYVIKPLKGGSSLGIIV 143
           ++ LS +K + KQ     GV     + V        +  ++SPP + K + GG+S GI+ 
Sbjct: 96  SALLSSNKWKMKQAFMKHGVRTARFLKVQTLQEAYSAFEVLSPPLIFKAVDGGASKGIVK 155

Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYE 203
           +     +             D  ++E++++G E   G       +  +  +P  DF  Y 
Sbjct: 156 VADMAHVEYAFETVRKDTKLDFFIVEEFIEGTEF--GAQAFVYDNQIQFIMPHGDFVFY- 212

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAF-----------LAHQAIGCRGISRSDFLFDP 252
              + +   H +P ++P    +EVQ+  F           L H AI       +DF+   
Sbjct: 213 -GDTGVPIGHYVPYELP----EEVQQDLFSQLKQSIEALELNHCAI------NADFILK- 260

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEM-AAYAGYSFRELLL 290
               V+ LEI  + G T     PE+ + + G+ + E ++
Sbjct: 261 -DGHVYVLEIGGRAGAT---CLPELVSTFYGFDYYEQII 295


>gi|77166901|gb|ABA62425.1| D-alanine-D-alanine ligase [Clostridium perfringens]
          Length = 106

 Score = 40.8 bits (94), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 23/92 (25%), Positives = 47/92 (51%), Gaps = 2/92 (2%)

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
            +  +  +++IE+Y+ G E+TC ++    L V  I  PK  F+    KY    +   +  
Sbjct: 4   EALKYDTEVMIEEYIKGDEITCPIIDGKMLPVLAIK-PKGKFFDIASKYEDGGADEFI-V 61

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
           ++   ++KEV+++A   ++ + C   +R D L
Sbjct: 62  ELNEYLHKEVEKMALETYKLLKCDVYARVDML 93


>gi|317053027|ref|YP_004119381.1| hypothetical protein Pat9b_4261 [Pantoea sp. At-9b]
 gi|316953354|gb|ADU72825.1| protein of unknown function DUF201 [Pantoea sp. At-9b]
          Length = 415

 Score = 40.4 bits (93), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 44/102 (43%), Gaps = 16/102 (15%)

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ-------HLISPPYVIKPLKGGSSL 139
           ++L  DK    + V   G+ V P      F+ D +        L  P  V+KPL    S 
Sbjct: 110 TSLRRDKYLMNEAVGRAGLKVTPQT----FSHDPEVLKKWFRQLGKPKVVVKPLDSAGSD 165

Query: 140 GIIVIKKDQSIPLDLL-----QSSSWNHGDQLLIEQYVDGIE 176
            + +   ++ I   +L     Q+S  NH    LI+Q++DG E
Sbjct: 166 DVYICTNEKQIETAVLAITGKQNSMHNHNHNALIQQFIDGTE 207


>gi|259484115|tpe|CBF80060.1| TPA: pyruvate carboxylase, putative (AFU_orthologue; AFUA_5G07570)
           [Aspergillus nidulans FGSC A4]
          Length = 653

 Score = 40.4 bits (93), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 57/245 (23%), Positives = 108/245 (44%), Gaps = 28/245 (11%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMD 92
           +D++  V LV  H     A + +H  +G   E       ++ L +     G  A   + D
Sbjct: 64  LDIELLVRLVQQH-----AIDAIHPGYGFLSESAEFARRMQDLGVIVIGPGWEALDRTGD 118

Query: 93  KMRSKQVVSSCGVPVCPSILVNRFTMDSQ---------HLISPPYVIKPLKGGSSLGIIV 143
           K+R+KQ+     VPV PS+  +  T  +          H +  P +IK + GG   GI +
Sbjct: 119 KLRAKQLAVENNVPVLPSLEYDMATPRATGLGKIKSFAHNVGYPVMIKAVDGGGGRGIRL 178

Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQ-YVDGI-ELTCGVMGDASLDVTEIAVPKSDFYS 201
           + +D  +   +  S++ +    + +E+  +DG   +   ++GD   DV  +   + D  S
Sbjct: 179 VHRDDDLGHAVRASAAESPSQTVFVEKAAIDGFHHIEIQIVGDGK-DVQHLW--ERDC-S 234

Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA---HQAIGCRGISRSDFLFDPLSRKVF 258
            + ++  +    + P+ I     + V R+A  A    +AI  R +   +FL +    + +
Sbjct: 235 VQRRFQKI--VEIAPSLIRDRNQELVSRIADAAVRMMKAIRYRSLGTVEFLVNEQLNEFY 292

Query: 259 WLEIN 263
           +LEIN
Sbjct: 293 FLEIN 297


>gi|306840400|ref|ZP_07473165.1| acetyl-CoA carboxylase, biotin carboxylase [Brucella sp. BO2]
 gi|306289638|gb|EFM60842.1| acetyl-CoA carboxylase, biotin carboxylase [Brucella sp. BO2]
          Length = 436

 Score = 40.4 bits (93), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 48/228 (21%), Positives = 94/228 (41%), Gaps = 30/228 (13%)

Query: 56  NVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSM--DKMRSKQVVSSCGVPVCPS 110
           + +H  +G   E+     ILE  +I +   G  AS + +  DK+ +K+     G+PV P 
Sbjct: 60  DAIHPGYGFLSENAKFAEILEAHDITFI--GPTASHIRIMGDKIEAKRTAKRLGIPVVPG 117

Query: 111 --------ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
                   +   R   +    I  P +IK   GG   G+ V +  + +P+ L  + S   
Sbjct: 118 SDGGVTDEVEAARIAKE----IGYPVIIKASAGGGGRGMKVARSAEELPIALATARSEAG 173

Query: 163 G----DQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
                D + IE+Y++    +   VMGD + +   +            K     ++  L A
Sbjct: 174 AAFGDDAVYIEKYLEKPRHIEVQVMGDGAGNAVHLGERDCSLQRRHQKVWEEGNSPALNA 233

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
               +  +++  +   A   +G RG    +FL++    + +++E+N +
Sbjct: 234 ----EAREKIGMICANACAELGYRGAGTIEFLYE--DGEFYFIEMNTR 275


>gi|289661864|ref|ZP_06483445.1| ribosomal protein S6 modification protein [Xanthomonas campestris
           pv. vasculorum NCPPB702]
 gi|289666948|ref|ZP_06488023.1| ribosomal protein S6 modification protein [Xanthomonas campestris
           pv. musacearum NCPPB4381]
          Length = 305

 Score = 40.4 bits (93), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 34/141 (24%), Positives = 74/141 (52%), Gaps = 12/141 (8%)

Query: 70  AILELLEIPYTHSGILASAL--SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS-- 125
           A+L  LE   T++   + A+  + DK+R+ Q++++ G+ + P  +      D+Q L+S  
Sbjct: 85  AVLRQLEFMGTYTPNPSDAILRARDKLRAHQLLAAQGIDM-PVTVFGDNPDDTQDLLSML 143

Query: 126 --PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV---DGIELTCG 180
             PP+V+K  +G    G+I+ +K  S    ++++    + +  ++++++   +G +L C 
Sbjct: 144 GPPPHVVKLNEGAQGAGVILTEK-ASASRGVVEALRGLYAN-FIVQEFIGEAEGADLRCF 201

Query: 181 VMGDASLDVTEIAVPKSDFYS 201
           V+GD  +        + DF S
Sbjct: 202 VVGDTVVAAMRRQAAEGDFRS 222


>gi|311104878|ref|YP_003977731.1| cyanophycin synthetase 2 [Achromobacter xylosoxidans A8]
 gi|310759567|gb|ADP15016.1| cyanophycin synthetase 2 [Achromobacter xylosoxidans A8]
          Length = 871

 Score = 40.4 bits (93), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 32/132 (24%), Positives = 58/132 (43%), Gaps = 3/132 (2%)

Query: 55  FNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
             +  GN  + G   A   +       +  +A  +S DK  +K+++S+CGVPV    LV 
Sbjct: 182 IRLFEGNLVQFGYGSAQRRIWTAETDRTSAIAEGISRDKDLTKELLSTCGVPVPEGRLVR 241

Query: 115 RF--TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                 ++   I  P V+KP  G    G+      +   +   + +  + G  +++E++V
Sbjct: 242 SEDDAWEAAEDIGLPVVVKPYDGNHGRGVFTNLTTREEVVSAYRVAV-DEGSGVIVERFV 300

Query: 173 DGIELTCGVMGD 184
            G E    V+GD
Sbjct: 301 LGNEHRLLVVGD 312


>gi|307324575|ref|ZP_07603782.1| Carbamoyl-phosphate synthase L chain ATP-binding [Streptomyces
           violaceusniger Tu 4113]
 gi|306889819|gb|EFN20798.1| Carbamoyl-phosphate synthase L chain ATP-binding [Streptomyces
           violaceusniger Tu 4113]
          Length = 747

 Score = 40.4 bits (93), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 48/91 (52%), Gaps = 10/91 (10%)

Query: 92  DKMRSKQVVSSCGVPVCPSILVNRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKD 147
           DK+R+K+ V + GVPV P    +  T D    +   I  P ++KP  GG   G+ ++ +D
Sbjct: 136 DKIRAKETVHTAGVPVVPGSSGSGLTDDQLTAAAREIGMPVLLKPSAGGGGKGMRLV-RD 194

Query: 148 QSIPLDLLQSSSWNHG-----DQLLIEQYVD 173
           +++  D + ++          D LL+E+++D
Sbjct: 195 EALLADEIAAARREARGAFGDDTLLVERWID 225


>gi|222869522|gb|EEF06653.1| predicted protein [Populus trichocarpa]
          Length = 393

 Score = 40.4 bits (93), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 30/129 (23%), Positives = 59/129 (45%), Gaps = 9/129 (6%)

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFT 117
           GN  + G   A   +       +  +A  ++ DK  +K+++++CGVPV    +V+     
Sbjct: 188 GNLVQLGYGAAQRRIWTAESDQTSAIAEGIAQDKDFTKRLLAACGVPVPEGQIVHSPEEA 247

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS---IPLDLLQSSSWNHGDQLLIEQYVDG 174
            +    I  P  +KP  G  + G+ +  +D++       L Q      G  +++E+++DG
Sbjct: 248 WEVAQDIGFPVTVKPSDGNHARGVTLDLRDEADIKAAFALAQPE----GSDVIVERFIDG 303

Query: 175 IELTCGVMG 183
            E    V+G
Sbjct: 304 TEHRILVVG 312


>gi|118468949|ref|YP_888976.1| acetyl-/propionyl-coenzyme A carboxylase alpha chain [Mycobacterium
           smegmatis str. MC2 155]
 gi|118170236|gb|ABK71132.1| acetyl-/propionyl-coenzyme A carboxylase alpha chain [Mycobacterium
           smegmatis str. MC2 155]
          Length = 669

 Score = 40.4 bits (93), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 76/173 (43%), Gaps = 22/173 (12%)

Query: 10  SEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ 69
           +E +V++  G A A        + S +D+D  VG   A      A +  +G   E+    
Sbjct: 49  TEADVAVCIGPAAA--------RHSYLDIDAVVGA--ARRTDAQAVHPGYGFLSENAEFA 98

Query: 70  AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP--- 126
           + L    I +      A A   DK+ +K  VS+ GVPV P I  +R  +    LI+    
Sbjct: 99  SALATAGIVFIGPPASAIATMGDKIAAKAAVSAFGVPVVPGI--SRPGLADDDLIAGAAE 156

Query: 127 ---PYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQLLIEQYV 172
              P ++KP  GG   G+ V++    +P  L+    ++ +    D L +E++V
Sbjct: 157 VGYPVLVKPSAGGGGKGMRVVEAAADLPAALVSARREAGAAFGDDTLFLERFV 209


>gi|258510765|ref|YP_003184199.1| urea carboxylase [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
 gi|257477491|gb|ACV57810.1| urea carboxylase [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 1201

 Score = 40.4 bits (93), Expect = 0.31,   Method: Composition-based stats.
 Identities = 41/185 (22%), Positives = 76/185 (41%), Gaps = 20/185 (10%)

Query: 93  KMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIKPLKGGSSLGIIVIKK 146
           K  ++ V    GVP+ P   + R   D + L      I  P ++K   GG  +G+ V+++
Sbjct: 116 KHVARDVARRAGVPLLPGTDLVR---DLEELRCVCADIGYPVILKSTAGGGGIGMRVVER 172

Query: 147 DQSIPLDLLQSSSWNHG-----DQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFY 200
           + ++  D  +S     G     D + +E+YV     +   + G+   ++  I        
Sbjct: 173 EDALA-DAFESVRRLAGQHFRDDGVFVEKYVPRARHIEVQIFGNRQGELVAIGERDCTLQ 231

Query: 201 SYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260
               K       HVL      +  + +   A    +A+G R     +FL+DP S   ++L
Sbjct: 232 RRNQKVVEECPAHVLSD----ETRRRLHEAALSVARAVGYRSAGTVEFLYDPSSASFYFL 287

Query: 261 EINVQ 265
           E+N +
Sbjct: 288 EVNTR 292


>gi|225627395|ref|ZP_03785432.1| acetyl-CoA carboxylase, biotin carboxylase [Brucella ceti str.
           Cudo]
 gi|225617400|gb|EEH14445.1| acetyl-CoA carboxylase, biotin carboxylase [Brucella ceti str.
           Cudo]
          Length = 459

 Score = 40.4 bits (93), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 48/228 (21%), Positives = 94/228 (41%), Gaps = 30/228 (13%)

Query: 56  NVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSM--DKMRSKQVVSSCGVPVCPS 110
           + +H  +G   E+     ILE  +I +   G  AS + +  DK+ +K+     G+PV P 
Sbjct: 83  DAIHPGYGFLSENAKFAEILEAHDITFI--GPTASHIRIMGDKIEAKRTAKRLGIPVVPG 140

Query: 111 --------ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
                   +   R   +    I  P +IK   GG   G+ V +  + +P+ L  + S   
Sbjct: 141 SDGGVTDEVEAARIAKE----IGYPVIIKASAGGGGRGMKVARSAEELPIALATARSEAG 196

Query: 163 G----DQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
                D + IE+Y++    +   VMGD + +   +            K     ++  L A
Sbjct: 197 AAFGDDAVYIEKYLEKPRHIEVQVMGDGAGNAVHLGERDCSLQRRHQKVWEEGNSPALNA 256

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
               +  +++  +   A   +G RG    +FL++    + +++E+N +
Sbjct: 257 ----EAREKIGMICANACAELGYRGAGTIEFLYE--DGEFYFIEMNTR 298


>gi|237815337|ref|ZP_04594335.1| acetyl-CoA carboxylase, biotin carboxylase [Brucella abortus str.
           2308 A]
 gi|237790174|gb|EEP64384.1| acetyl-CoA carboxylase, biotin carboxylase [Brucella abortus str.
           2308 A]
          Length = 459

 Score = 40.4 bits (93), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 48/228 (21%), Positives = 94/228 (41%), Gaps = 30/228 (13%)

Query: 56  NVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSM--DKMRSKQVVSSCGVPVCPS 110
           + +H  +G   E+     ILE  +I +   G  AS + +  DK+ +K+     G+PV P 
Sbjct: 83  DAIHPGYGFLSENAKFAEILEAHDITFI--GPTASHIRIMGDKIEAKRTAKRLGIPVVPG 140

Query: 111 --------ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
                   +   R   +    I  P +IK   GG   G+ V +  + +P+ L  + S   
Sbjct: 141 SDGGVTDEVEAARIAKE----IGYPVIIKASAGGGGRGMKVARSAEELPIALATARSEAG 196

Query: 163 G----DQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
                D + IE+Y++    +   VMGD + +   +            K     ++  L A
Sbjct: 197 AAFGDDAVYIEKYLEKPRHIEVQVMGDGAGNAVHLGERDCSLQRRHQKVWEEGNSPALNA 256

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
               +  +++  +   A   +G RG    +FL++    + +++E+N +
Sbjct: 257 ----EAREKIGMICANACAELGYRGAGTIEFLYE--DGEFYFIEMNTR 298


>gi|161511139|ref|NP_539980.2| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella
           melitensis bv. 1 str. 16M]
 gi|225852418|ref|YP_002732651.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella
           melitensis ATCC 23457]
 gi|256044579|ref|ZP_05447483.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella
           melitensis bv. 1 str. Rev.1]
 gi|256264084|ref|ZP_05466616.1| acetyl-CoA carboxylase [Brucella melitensis bv. 2 str. 63/9]
 gi|260563930|ref|ZP_05834416.1| acetyl-CoA carboxylase [Brucella melitensis bv. 1 str. 16M]
 gi|265991003|ref|ZP_06103560.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella
           melitensis bv. 1 str. Rev.1]
 gi|225640783|gb|ACO00697.1| acetyl-CoA carboxylase, biotin carboxylase [Brucella melitensis
           ATCC 23457]
 gi|260153946|gb|EEW89038.1| acetyl-CoA carboxylase [Brucella melitensis bv. 1 str. 16M]
 gi|263001787|gb|EEZ14362.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella
           melitensis bv. 1 str. Rev.1]
 gi|263094288|gb|EEZ18149.1| acetyl-CoA carboxylase [Brucella melitensis bv. 2 str. 63/9]
          Length = 452

 Score = 40.4 bits (93), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 48/228 (21%), Positives = 94/228 (41%), Gaps = 30/228 (13%)

Query: 56  NVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSM--DKMRSKQVVSSCGVPVCPS 110
           + +H  +G   E+     ILE  +I +   G  AS + +  DK+ +K+     G+PV P 
Sbjct: 76  DAIHPGYGFLSENAKFAEILEAHDITFI--GPTASHIRIMGDKIEAKRTAKRLGIPVVPG 133

Query: 111 --------ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
                   +   R   +    I  P +IK   GG   G+ V +  + +P+ L  + S   
Sbjct: 134 SDGGVTDEVEAARIAKE----IGYPVIIKASAGGGGRGMKVARSAEELPIALATARSEAG 189

Query: 163 G----DQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
                D + IE+Y++    +   VMGD + +   +            K     ++  L A
Sbjct: 190 AAFGDDAVYIEKYLEKPRHIEVQVMGDGAGNAVHLGERDCSLQRRHQKVWEEGNSPALNA 249

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
               +  +++  +   A   +G RG    +FL++    + +++E+N +
Sbjct: 250 ----EAREKIGMICANACAELGYRGAGTIEFLYE--DGEFYFIEMNTR 291


>gi|326408927|gb|ADZ65992.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella
           melitensis M28]
 gi|326538643|gb|ADZ86858.1| acetyl-CoA carboxylase, biotin carboxylase [Brucella melitensis
           M5-90]
          Length = 413

 Score = 40.4 bits (93), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 48/228 (21%), Positives = 94/228 (41%), Gaps = 30/228 (13%)

Query: 56  NVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSM--DKMRSKQVVSSCGVPVCPS 110
           + +H  +G   E+     ILE  +I +   G  AS + +  DK+ +K+     G+PV P 
Sbjct: 37  DAIHPGYGFLSENAKFAEILEAHDITFI--GPTASHIRIMGDKIEAKRTAKRLGIPVVPG 94

Query: 111 --------ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
                   +   R   +    I  P +IK   GG   G+ V +  + +P+ L  + S   
Sbjct: 95  SDGGVTDEVEAARIAKE----IGYPVIIKASAGGGGRGMKVARSAEELPIALATARSEAG 150

Query: 163 G----DQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
                D + IE+Y++    +   VMGD + +   +            K     ++  L A
Sbjct: 151 AAFGDDAVYIEKYLEKPRHIEVQVMGDGAGNAVHLGERDCSLQRRHQKVWEEGNSPALNA 210

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
               +  +++  +   A   +G RG    +FL++    + +++E+N +
Sbjct: 211 ----EAREKIGMICANACAELGYRGAGTIEFLYE--DGEFYFIEMNTR 252


>gi|163843176|ref|YP_001627580.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella suis
           ATCC 23445]
 gi|163673899|gb|ABY38010.1| acetyl-CoA carboxylase, biotin carboxylase [Brucella suis ATCC
           23445]
          Length = 452

 Score = 40.4 bits (93), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 48/228 (21%), Positives = 94/228 (41%), Gaps = 30/228 (13%)

Query: 56  NVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSM--DKMRSKQVVSSCGVPVCPS 110
           + +H  +G   E+     ILE  +I +   G  AS + +  DK+ +K+     G+PV P 
Sbjct: 76  DAIHPGYGFLSENAKFAEILEAHDITFI--GPTASHIRIMGDKIEAKRTAKRLGIPVVPG 133

Query: 111 --------ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
                   +   R   +    I  P +IK   GG   G+ V +  + +P+ L  + S   
Sbjct: 134 SDGGVTDEVEAARIAKE----IGYPVIIKASAGGGGRGMKVARSAEELPIALATARSEAG 189

Query: 163 G----DQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
                D + IE+Y++    +   VMGD + +   +            K     ++  L A
Sbjct: 190 AAFGDDAVYIEKYLEKPRHIEVQVMGDGAGNAVHLGERDCSLQRRHQKVWEEGNSPALNA 249

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
               +  +++  +   A   +G RG    +FL++    + +++E+N +
Sbjct: 250 ----EAREKIGMICANACAELGYRGAGTIEFLYE--DGEFYFIEMNTR 291


>gi|256113452|ref|ZP_05454293.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella
           melitensis bv. 3 str. Ether]
 gi|265994840|ref|ZP_06107397.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella
           melitensis bv. 3 str. Ether]
 gi|262765953|gb|EEZ11742.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella
           melitensis bv. 3 str. Ether]
          Length = 452

 Score = 40.4 bits (93), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 48/228 (21%), Positives = 94/228 (41%), Gaps = 30/228 (13%)

Query: 56  NVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSM--DKMRSKQVVSSCGVPVCPS 110
           + +H  +G   E+     ILE  +I +   G  AS + +  DK+ +K+     G+PV P 
Sbjct: 76  DAIHPGYGFLSENAKFAEILEAHDITFI--GPTASHIRIMGDKIEAKRTAKRLGIPVVPG 133

Query: 111 --------ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
                   +   R   +    I  P +IK   GG   G+ V +  + +P+ L  + S   
Sbjct: 134 SDGGVTDEVEAARIAKE----IGYPVIIKASAGGGGRGMKVARSAEELPIALATARSEAG 189

Query: 163 G----DQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
                D + IE+Y++    +   VMGD + +   +            K     ++  L A
Sbjct: 190 AAFGDDAVYIEKYLEKPRHIEVQVMGDGAGNAVHLGERDCSLQRRHQKVWEEGNSPALNA 249

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
               +  +++  +   A   +G RG    +FL++    + +++E+N +
Sbjct: 250 ----EAREKIGMICANACAELGYRGAGTIEFLYE--DGEFYFIEMNTR 291


>gi|16519926|ref|NP_444046.1| conserved putative dicarboxylase [Sinorhizobium fredii NGR234]
 gi|2493314|sp|P55641|Y4RH_RHISN RecName: Full=Uncharacterized protein y4rH
 gi|2182606|gb|AAB91833.1| conserved putative dicarboxylase [Sinorhizobium fredii NGR234]
          Length = 478

 Score = 40.4 bits (93), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 32/113 (28%), Positives = 52/113 (46%), Gaps = 10/113 (8%)

Query: 92  DKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---ISPPYVIKPLKGGSSLGIIVIKKDQ 148
           +K   +QV+++ GVPV P         + Q +   I  P V+KP  G  S G+ + +  +
Sbjct: 169 NKAAQRQVLAAAGVPV-PGYRSATTAAEVQCVAAEIGLPAVLKPAVGSGSRGVRLCRDAR 227

Query: 149 SIP--LDLLQSSS--WNHGDQLLIEQYVDGIELTCGVMGDA--SLDVTEIAVP 195
            +    D L      W    ++L+EQ+VDG      +MGD    + +TE   P
Sbjct: 228 ELAEHTDYLLGGKHMWRSSPEVLVEQFVDGPHYIAEIMGDEVIGIGITEYGPP 280


>gi|254523077|ref|ZP_05135132.1| ribosomal protein S6 modification protein [Stenotrophomonas sp.
           SKA14]
 gi|219720668|gb|EED39193.1| ribosomal protein S6 modification protein [Stenotrophomonas sp.
           SKA14]
          Length = 332

 Score = 40.4 bits (93), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 42/186 (22%), Positives = 88/186 (47%), Gaps = 22/186 (11%)

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIK 145
           S DK+R+ Q++++ G+ + P  +      D+  L+S    PP+V+K  +G    G+I+ +
Sbjct: 137 SRDKLRAHQLLAAKGIDM-PVTVFGDNPDDTVDLLSMLGPPPHVVKLNEGTQGRGVILTE 195

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYV---DGIELTCGVMGDASLDVTEIAVPKSDFYSY 202
           K  S    ++++    + +  L+++++    G +L C V+GD  +   +   P+ DF S 
Sbjct: 196 K-ASASRGIVEALRGLYAN-FLMQEFIGEAKGADLRCFVVGDQVVASMQRQAPEGDFRS- 252

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
                   + H     +     +  Q++A  + +A+G   +   D +    +R    LE+
Sbjct: 253 --------NLHAGGTAVAAKASRAEQQVAVRSAKALGL-SVCGVDLIRS--ARGPLVLEV 301

Query: 263 NVQPGM 268
           N  PG+
Sbjct: 302 NSTPGL 307


>gi|17983030|gb|AAL52244.1| biotin carboxylase [Brucella melitensis bv. 1 str. 16M]
          Length = 459

 Score = 40.4 bits (93), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 48/228 (21%), Positives = 94/228 (41%), Gaps = 30/228 (13%)

Query: 56  NVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSM--DKMRSKQVVSSCGVPVCPS 110
           + +H  +G   E+     ILE  +I +   G  AS + +  DK+ +K+     G+PV P 
Sbjct: 83  DAIHPGYGFLSENAKFAEILEAHDITFI--GPTASHIRIMGDKIEAKRTAKRLGIPVVPG 140

Query: 111 --------ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
                   +   R   +    I  P +IK   GG   G+ V +  + +P+ L  + S   
Sbjct: 141 SDGGVTDEVEAARIAKE----IGYPVIIKASAGGGGRGMKVARSAEELPIALATARSEAG 196

Query: 163 G----DQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
                D + IE+Y++    +   VMGD + +   +            K     ++  L A
Sbjct: 197 AAFGDDAVYIEKYLEKPRHIEVQVMGDGAGNAVHLGERDCSLQRRHQKVWEEGNSPALNA 256

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
               +  +++  +   A   +G RG    +FL++    + +++E+N +
Sbjct: 257 ----EAREKIGMICANACAELGYRGAGTIEFLYE--DGEFYFIEMNTR 298


>gi|254706885|ref|ZP_05168713.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella
           pinnipedialis M163/99/10]
 gi|254710007|ref|ZP_05171818.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella
           pinnipedialis B2/94]
 gi|254716933|ref|ZP_05178744.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella ceti
           M13/05/1]
 gi|256031502|ref|ZP_05445116.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella
           pinnipedialis M292/94/1]
 gi|260168635|ref|ZP_05755446.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella sp.
           F5/99]
 gi|261218739|ref|ZP_05933020.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella ceti
           M13/05/1]
 gi|261314350|ref|ZP_05953547.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella
           pinnipedialis M163/99/10]
 gi|261317555|ref|ZP_05956752.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella
           pinnipedialis B2/94]
 gi|261758108|ref|ZP_06001817.1| acetyl-CoA carboxylase [Brucella sp. F5/99]
 gi|265988589|ref|ZP_06101146.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella
           pinnipedialis M292/94/1]
 gi|260923828|gb|EEX90396.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella ceti
           M13/05/1]
 gi|261296778|gb|EEY00275.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella
           pinnipedialis B2/94]
 gi|261303376|gb|EEY06873.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella
           pinnipedialis M163/99/10]
 gi|261738092|gb|EEY26088.1| acetyl-CoA carboxylase [Brucella sp. F5/99]
 gi|264660786|gb|EEZ31047.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella
           pinnipedialis M292/94/1]
          Length = 452

 Score = 40.4 bits (93), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 48/228 (21%), Positives = 94/228 (41%), Gaps = 30/228 (13%)

Query: 56  NVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSM--DKMRSKQVVSSCGVPVCPS 110
           + +H  +G   E+     ILE  +I +   G  AS + +  DK+ +K+     G+PV P 
Sbjct: 76  DAIHPGYGFLSENAKFAEILEAHDITFI--GPTASHIRIMGDKIEAKRTAKRLGIPVVPG 133

Query: 111 --------ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
                   +   R   +    I  P +IK   GG   G+ V +  + +P+ L  + S   
Sbjct: 134 SDGGVTDEVEAARIAKE----IGYPVIIKASAGGGGRGMKVARSAEELPIALATARSEAG 189

Query: 163 G----DQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
                D + IE+Y++    +   VMGD + +   +            K     ++  L A
Sbjct: 190 AAFGDDAVYIEKYLEKPRHIEVQVMGDGAGNAVHLGERDCSLQRRHQKVWEEGNSPALNA 249

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
               +  +++  +   A   +G RG    +FL++    + +++E+N +
Sbjct: 250 ----EAREKIGMICANACAELGYRGAGTIEFLYE--DGEFYFIEMNTR 291


>gi|23501792|ref|NP_697919.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella suis
           1330]
 gi|62289849|ref|YP_221642.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella abortus
           bv. 1 str. 9-941]
 gi|82699775|ref|YP_414349.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella
           melitensis biovar Abortus 2308]
 gi|148560130|ref|YP_001258883.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella ovis
           ATCC 25840]
 gi|161618864|ref|YP_001592751.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella canis
           ATCC 23365]
 gi|189024091|ref|YP_001934859.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella abortus
           S19]
 gi|254693638|ref|ZP_05155466.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella abortus
           bv. 3 str. Tulya]
 gi|254697290|ref|ZP_05159118.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella abortus
           bv. 2 str. 86/8/59]
 gi|254701670|ref|ZP_05163498.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella suis
           bv. 5 str. 513]
 gi|254704213|ref|ZP_05166041.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella suis
           bv. 3 str. 686]
 gi|254719009|ref|ZP_05180820.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella sp.
           83/13]
 gi|254730188|ref|ZP_05188766.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella abortus
           bv. 4 str. 292]
 gi|256061011|ref|ZP_05451168.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella
           neotomae 5K33]
 gi|256257405|ref|ZP_05462941.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella abortus
           bv. 9 str. C68]
 gi|256369334|ref|YP_003106842.1| acetyl-CoA carboxylase [Brucella microti CCM 4915]
 gi|260545404|ref|ZP_05821145.1| acetyl-CoA carboxylase [Brucella abortus NCTC 8038]
 gi|260566539|ref|ZP_05837009.1| acetyl-CoA carboxylase [Brucella suis bv. 4 str. 40]
 gi|260757877|ref|ZP_05870225.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella abortus
           bv. 4 str. 292]
 gi|260761700|ref|ZP_05874043.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella abortus
           bv. 2 str. 86/8/59]
 gi|260883680|ref|ZP_05895294.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella abortus
           bv. 9 str. C68]
 gi|261213904|ref|ZP_05928185.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella abortus
           bv. 3 str. Tulya]
 gi|261325011|ref|ZP_05964208.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella
           neotomae 5K33]
 gi|261752222|ref|ZP_05995931.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella suis
           bv. 5 str. 513]
 gi|261754881|ref|ZP_05998590.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella suis
           bv. 3 str. 686]
 gi|265983999|ref|ZP_06096734.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella sp.
           83/13]
 gi|297248254|ref|ZP_06931972.1| acetyl-CoA carboxylase, biotin carboxylase [Brucella abortus bv. 5
           str. B3196]
 gi|306840104|ref|ZP_07472890.1| acetyl-CoA carboxylase, biotin carboxylase [Brucella sp. NF 2653]
 gi|306843804|ref|ZP_07476402.1| acetyl-CoA carboxylase, biotin carboxylase [Brucella sp. BO1]
 gi|23347723|gb|AAN29834.1| acetyl-CoA carboxylase, biotin carboxylase [Brucella suis 1330]
 gi|62195981|gb|AAX74281.1| AccC, acetyl-CoA carboxylase, biotin carboxylase [Brucella abortus
           bv. 1 str. 9-941]
 gi|82615876|emb|CAJ10880.1| Acetyl-CoA carboxylase, biotin carboxylase:Carbamoyl-phosphate
           synthase L chain, ATP-binding:Carbamoyl-phosphate
           synthetase l [Brucella melitensis biovar Abortus 2308]
 gi|148371387|gb|ABQ61366.1| acetyl-CoA carboxylase, biotin carboxylase [Brucella ovis ATCC
           25840]
 gi|161335675|gb|ABX61980.1| Acetyl-CoA carboxylase [Brucella canis ATCC 23365]
 gi|189019663|gb|ACD72385.1| acetyl-CoA carboxylase [Brucella abortus S19]
 gi|255999494|gb|ACU47893.1| acetyl-CoA carboxylase [Brucella microti CCM 4915]
 gi|260096811|gb|EEW80686.1| acetyl-CoA carboxylase [Brucella abortus NCTC 8038]
 gi|260156057|gb|EEW91137.1| acetyl-CoA carboxylase [Brucella suis bv. 4 str. 40]
 gi|260668195|gb|EEX55135.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella abortus
           bv. 4 str. 292]
 gi|260672132|gb|EEX58953.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella abortus
           bv. 2 str. 86/8/59]
 gi|260873208|gb|EEX80277.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella abortus
           bv. 9 str. C68]
 gi|260915511|gb|EEX82372.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella abortus
           bv. 3 str. Tulya]
 gi|261300991|gb|EEY04488.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella
           neotomae 5K33]
 gi|261741975|gb|EEY29901.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella suis
           bv. 5 str. 513]
 gi|261744634|gb|EEY32560.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella suis
           bv. 3 str. 686]
 gi|264662591|gb|EEZ32852.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella sp.
           83/13]
 gi|297175423|gb|EFH34770.1| acetyl-CoA carboxylase, biotin carboxylase [Brucella abortus bv. 5
           str. B3196]
 gi|306275882|gb|EFM57598.1| acetyl-CoA carboxylase, biotin carboxylase [Brucella sp. BO1]
 gi|306404832|gb|EFM61125.1| acetyl-CoA carboxylase, biotin carboxylase [Brucella sp. NF 2653]
          Length = 452

 Score = 40.4 bits (93), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 48/228 (21%), Positives = 94/228 (41%), Gaps = 30/228 (13%)

Query: 56  NVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSM--DKMRSKQVVSSCGVPVCPS 110
           + +H  +G   E+     ILE  +I +   G  AS + +  DK+ +K+     G+PV P 
Sbjct: 76  DAIHPGYGFLSENAKFAEILEAHDITFI--GPTASHIRIMGDKIEAKRTAKRLGIPVVPG 133

Query: 111 --------ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
                   +   R   +    I  P +IK   GG   G+ V +  + +P+ L  + S   
Sbjct: 134 SDGGVTDEVEAARIAKE----IGYPVIIKASAGGGGRGMKVARSAEELPIALATARSEAG 189

Query: 163 G----DQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
                D + IE+Y++    +   VMGD + +   +            K     ++  L A
Sbjct: 190 AAFGDDAVYIEKYLEKPRHIEVQVMGDGAGNAVHLGERDCSLQRRHQKVWEEGNSPALNA 249

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
               +  +++  +   A   +G RG    +FL++    + +++E+N +
Sbjct: 250 ----EAREKIGMICANACAELGYRGAGTIEFLYE--DGEFYFIEMNTR 291


>gi|254689155|ref|ZP_05152409.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella abortus
           bv. 6 str. 870]
 gi|260754654|ref|ZP_05867002.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella abortus
           bv. 6 str. 870]
 gi|260674762|gb|EEX61583.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella abortus
           bv. 6 str. 870]
          Length = 452

 Score = 40.4 bits (93), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 48/228 (21%), Positives = 94/228 (41%), Gaps = 30/228 (13%)

Query: 56  NVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSM--DKMRSKQVVSSCGVPVCPS 110
           + +H  +G   E+     ILE  +I +   G  AS + +  DK+ +K+     G+PV P 
Sbjct: 76  DAIHPGYGFLSENAKFAEILEAHDITFI--GPTASHIRIMGDKIEAKRTAKRLGIPVVPG 133

Query: 111 --------ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
                   +   R   +    I  P +IK   GG   G+ V +  + +P+ L  + S   
Sbjct: 134 SDGGVTDEVEAARIAKE----IGYPVIIKASAGGGGRGMKVARSAEELPIALATARSEAG 189

Query: 163 G----DQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
                D + IE+Y++    +   VMGD + +   +            K     ++  L A
Sbjct: 190 AAFGDDAVYIEKYLEKPRHIEVQVMGDGAGNAVHLGERDCSLQRRHQKVWEEGNSPALNA 249

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
               +  +++  +   A   +G RG    +FL++    + +++E+N +
Sbjct: 250 ----EAREKIGMICANACAELGYRGAGTIEFLYE--DGEFYFIEMNTR 291


>gi|20094191|ref|NP_614038.1| carbamoylphosphate synthase large subunit [Methanopyrus kandleri
           AV19]
 gi|19887210|gb|AAM01968.1| Carbamoylphosphate synthase large subunit [Methanopyrus kandleri
           AV19]
          Length = 379

 Score = 40.4 bits (93), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 47/206 (22%), Positives = 89/206 (43%), Gaps = 24/206 (11%)

Query: 66  GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS 125
           G ++  LE   I    S   +  + +DK+R+K+      VP     +V     + +  IS
Sbjct: 79  GEMKEELEAEGIRVVASDRESVEIGIDKVRTKRAFEELNVPTPEWEVVE----NERPSIS 134

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
           PP V+K  +  + LG+ V +  +                + L+E++++G E++  V+   
Sbjct: 135 PPVVVKDPRSQAGLGVTVHETHKP-----------RVSGRKLVEEFIEGAEVSIEVLSWD 183

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
              V  + V K    S   +   ++   + PA I   + ++++R A    + +G  G   
Sbjct: 184 GEVVPLVPVFKG---STADRRHPIDRMRMSPAPIDPSVERKIRRCAVRVVEHLGLEG--- 237

Query: 246 SDFLFDPLSRK-VFW-LEINVQPGMT 269
            +  FD + R+  FW LE N +P  T
Sbjct: 238 -NVDFDVVVRENEFWFLEFNPRPSGT 262


>gi|294852261|ref|ZP_06792934.1| acetyl-CoA carboxylase [Brucella sp. NVSL 07-0026]
 gi|294820850|gb|EFG37849.1| acetyl-CoA carboxylase [Brucella sp. NVSL 07-0026]
          Length = 413

 Score = 40.4 bits (93), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 48/228 (21%), Positives = 94/228 (41%), Gaps = 30/228 (13%)

Query: 56  NVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSM--DKMRSKQVVSSCGVPVCPS 110
           + +H  +G   E+     ILE  +I +   G  AS + +  DK+ +K+     G+PV P 
Sbjct: 37  DAIHPGYGFLSENAKFAEILEAHDITFI--GPTASHIRIMGDKIEAKRTAKRLGIPVVPG 94

Query: 111 --------ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
                   +   R   +    I  P +IK   GG   G+ V +  + +P+ L  + S   
Sbjct: 95  SDGGVTDEVEAARIAKE----IGYPVIIKASAGGGGRGMKVARSAEELPIALATARSEAG 150

Query: 163 G----DQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
                D + IE+Y++    +   VMGD + +   +            K     ++  L A
Sbjct: 151 AAFGDDAVYIEKYLEKPRHIEVQVMGDGAGNAVHLGERDCSLQRRHQKVWEEGNSPALNA 210

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
               +  +++  +   A   +G RG    +FL++    + +++E+N +
Sbjct: 211 ----EAREKIGMICANACAELGYRGAGTIEFLYE--DGEFYFIEMNTR 252


>gi|256159627|ref|ZP_05457389.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella ceti
           M490/95/1]
 gi|256254907|ref|ZP_05460443.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella ceti
           B1/94]
 gi|261222089|ref|ZP_05936370.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella ceti
           B1/94]
 gi|265998054|ref|ZP_06110611.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella ceti
           M490/95/1]
 gi|260920673|gb|EEX87326.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella ceti
           B1/94]
 gi|262552522|gb|EEZ08512.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella ceti
           M490/95/1]
          Length = 452

 Score = 40.4 bits (93), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 48/228 (21%), Positives = 94/228 (41%), Gaps = 30/228 (13%)

Query: 56  NVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSM--DKMRSKQVVSSCGVPVCPS 110
           + +H  +G   E+     ILE  +I +   G  AS + +  DK+ +K+     G+PV P 
Sbjct: 76  DAIHPGYGFLSENAKFAEILEAHDITFI--GPTASHIRIMGDKIEAKRTAKRLGIPVVPG 133

Query: 111 --------ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
                   +   R   +    I  P +IK   GG   G+ V +  + +P+ L  + S   
Sbjct: 134 SDGGVTDEVEAARIAKE----IGYPVIIKASAGGGGRGMKVARSAEELPIALATARSEAG 189

Query: 163 G----DQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
                D + IE+Y++    +   VMGD + +   +            K     ++  L A
Sbjct: 190 AAFGDDAVYIEKYLEKPRHIEVQVMGDGAGNAVHLGERDCSLQRRHQKVWEEGNSPALNA 249

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
               +  +++  +   A   +G RG    +FL++    + +++E+N +
Sbjct: 250 ----EAREKIGMICANACAELGYRGAGTIEFLYE--DGEFYFIEMNTR 291


>gi|88855540|ref|ZP_01130204.1| ribosomal protein S6 modification protein [marine actinobacterium
           PHSC20C1]
 gi|88815447|gb|EAR25305.1| ribosomal protein S6 modification protein [marine actinobacterium
           PHSC20C1]
          Length = 396

 Score = 40.4 bits (93), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 50/201 (24%), Positives = 86/201 (42%), Gaps = 31/201 (15%)

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV-NR--FTMDSQHLISPPYVIKPLK 134
           P T SGI  S    DK+R+ Q++S   + +  +  V NR    M  + +   P VIK L+
Sbjct: 88  PNTSSGITNS---RDKLRATQILSRHDIAMPATTFVHNRADVEMAIERVGGAPVVIKLLE 144

Query: 135 GGSSLGIIVIKKDQSIP--LDLLQSSSWNHGDQLLIEQYV---DGIELTCGVMGDASLDV 189
           G   +G+I+    Q     ++ L S+  N    +LI+ ++    G ++   V+GD  +  
Sbjct: 145 GTQGIGVILAPDTQVAKAIIETLHSTKQN----VLIQSFISESKGRDIRALVVGDRVVAA 200

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR--GISRSD 247
                   +F S   +  ++ +  + P         E  R A  A Q +G R  G+   +
Sbjct: 201 MRRVAVGDEFRSNVHRGGNVEAVELTP---------EYHRAAVKAAQIMGLRVAGVDMLE 251

Query: 248 FLFDPLSRKVFWLEINVQPGM 268
               PL      +E+N  PG+
Sbjct: 252 GNDGPL-----VMEVNSSPGL 267


>gi|298480513|ref|ZP_06998710.1| carbamoyl-phosphate synthase large subunit [Bacteroides sp. D22]
 gi|298273334|gb|EFI14898.1| carbamoyl-phosphate synthase large subunit [Bacteroides sp. D22]
          Length = 371

 Score = 40.0 bits (92), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 37/146 (25%), Positives = 72/146 (49%), Gaps = 10/146 (6%)

Query: 125 SPPYVIKPLKGGSSLGIIVI--KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
           S P ++KP+ G  S G+  +  K+D +  LD    +S N  + +LIE+Y++G E++   +
Sbjct: 132 SYPVIVKPVDGSCSNGVTKVSRKEDFAQALDRALQASCN--NCILIEEYIEGREVSVESI 189

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC-R 241
              S       +  +D  +    Y  + + H  P+ +P DI ++++        AIG   
Sbjct: 190 ---SFHGKHYVITITDKETTGAPY-FVETAHHQPSNLPFDIQEKLKCAVKSMLDAIGINN 245

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPG 267
           G S ++F  D  +  +F++E+  + G
Sbjct: 246 GASHAEFKIDQ-NGNIFFIEVGARGG 270


>gi|120405044|ref|YP_954873.1| carbamoyl-phosphate synthase ATP-binding subunit L [Mycobacterium
           vanbaalenii PYR-1]
 gi|119957862|gb|ABM14867.1| Carbamoyl-phosphate synthase L chain, ATP-binding protein
           [Mycobacterium vanbaalenii PYR-1]
          Length = 660

 Score = 40.0 bits (92), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 33/124 (26%), Positives = 56/124 (45%), Gaps = 12/124 (9%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
           +G   E+      L+   I +    + A     DK+ +K  VS  GVPV P I  +R  +
Sbjct: 82  YGFLSENAQFAEALDAAGIAFIGPPVAAIQTMGDKISAKAAVSEFGVPVVPGI--SRPGL 139

Query: 119 DSQHLISP------PYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQLLI 168
             Q LI+       P ++KP  GG   G+ V++    +   L+    +++S    D L +
Sbjct: 140 TDQDLIAGAADVGFPVLVKPSAGGGGKGMRVVQDASELRAALVSARREAASAFGDDTLFL 199

Query: 169 EQYV 172
           E++V
Sbjct: 200 ERFV 203


>gi|270159026|ref|ZP_06187682.1| RimK family alpha-L-glutamate ligase [Legionella longbeachae
           D-4968]
 gi|289166137|ref|YP_003456275.1| ribosomal protein S6 modification protein [Legionella longbeachae
           NSW150]
 gi|269987365|gb|EEZ93620.1| RimK family alpha-L-glutamate ligase [Legionella longbeachae
           D-4968]
 gi|288859310|emb|CBJ13245.1| ribosomal protein S6 modification protein [Legionella longbeachae
           NSW150]
          Length = 302

 Score = 40.0 bits (92), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 44/202 (21%), Positives = 94/202 (46%), Gaps = 26/202 (12%)

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI----SPPYVIKPLK 134
           YT +  +A + S DK+RS Q+++  G+P+ P     +   D++ L+      P VIK L+
Sbjct: 87  YTLNESIAISRSRDKLRSLQLLARKGIPM-PLTSFAQSPDDTEDLVRMVGGAPLVIKLLE 145

Query: 135 GGSSLGIIVIKKDQSIP--LDLLQSSSWNHGDQLLIEQYVD---GIELTCGVMGDASLDV 189
           G    G+I+    QS    ++  +    N    +L++++++   G+++ C V+G+  +  
Sbjct: 146 GTQGKGVILADSHQSAVSIINAFKEMRAN----ILVQEFIEESRGVDIRCFVVGEKIVAA 201

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
            +    + +F +         + H     + + +  E + +A  A + +G + ++  D +
Sbjct: 202 VKRQAKEGEFRA---------NVHQGGTAVKVKLSPEERTIAIRAAKTMGLK-VAGVDLI 251

Query: 250 FDPLSRKVFWLEINVQPGMTPV 271
               +     LEIN  PG+  V
Sbjct: 252 RS--NHGPLVLEINSSPGLEGV 271


>gi|108803106|ref|YP_643043.1| phosphoribosylaminoimidazole carboxylase [Rubrobacter xylanophilus
           DSM 9941]
 gi|108764349|gb|ABG03231.1| phosphoribosylaminoimidazole carboxylase [Rubrobacter xylanophilus
           DSM 9941]
          Length = 388

 Score = 40.0 bits (92), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 37/165 (22%), Positives = 70/165 (42%), Gaps = 26/165 (15%)

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIKPLKGG-SSLGII 142
           +  ++R K+ V   GV V P   V     D + L      +  P V+K   GG    G  
Sbjct: 104 TQHRLREKRAVEEAGVRVAPYEPVR----DGEDLRAALRRLGTPCVLKTATGGYDGRGQR 159

Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSY 202
           VI+ +   P  L + S    G +L++E++V           +  L V     P  +  ++
Sbjct: 160 VIRSEDEAPAALSELS--GEGTELVLERFV---------RFEKELSVIAARTPGGEVRTF 208

Query: 203 ----ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
                +   ++    ++PA+IP ++ +E +R+A    + +G  G+
Sbjct: 209 PPAENVHVDNILHLSIVPARIPREVQEEARRMAVRVAEGLGVVGL 253


>gi|322824069|gb|EFZ29605.1| 3-methylcrotonyl-CoA carboxylase, putative [Trypanosoma cruzi]
          Length = 679

 Score = 40.0 bits (92), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 39/182 (21%), Positives = 80/182 (43%), Gaps = 13/182 (7%)

Query: 93  KMRSKQVVSSCGVPVCPSILVNRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQ 148
           K  SK+++ + GVPV P       + +        I  P +IK + GG   G+ ++K   
Sbjct: 126 KSESKRIMEAAGVPVVPGYYGEDQSFECLCEEAKKIGFPVLIKAVSGGGGKGMKIVKSVD 185

Query: 149 SIPLDL----LQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYE 203
              L L     +S ++   D++++E+YV     + C +  D   +   +   + D  S +
Sbjct: 186 EFKLMLESAKRESMNFFKDDRVILERYVTQPRHIECQIFFDKFGN--GVFFFERD-CSVQ 242

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            ++  +      P   P ++   +  ++  A +A+G  G    +F+FD      F++E+N
Sbjct: 243 RRHQKVIEEAPAPHITP-EMRHRIGTVSLRAAKAVGYVGAGTVEFIFDTERNTFFFMEMN 301

Query: 264 VQ 265
            +
Sbjct: 302 TR 303


>gi|282899544|ref|ZP_06307508.1| cphA (Cyanophycin synthetase) [Cylindrospermopsis raciborskii
           CS-505]
 gi|281195423|gb|EFA70356.1| cphA (Cyanophycin synthetase) [Cylindrospermopsis raciborskii
           CS-505]
          Length = 860

 Score = 40.0 bits (92), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 5/67 (7%)

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI----SPPYVIKPLKGG 136
           ++GIL   L+ DK  +K+++++ GVPV    ++N F  D +  I      P VIKPL G 
Sbjct: 184 NTGILGVELACDKEATKRILANSGVPVPKGTVIN-FLDDLEEAIDYVGGYPIVIKPLDGN 242

Query: 137 SSLGIIV 143
              GI +
Sbjct: 243 HGRGITI 249


>gi|309779051|ref|ZP_07673818.1| cyanophycin synthase (L-aspartate-adding) [Ralstonia sp. 5_7_47FAA]
 gi|308922116|gb|EFP67746.1| cyanophycin synthase (L-aspartate-adding) [Ralstonia sp. 5_7_47FAA]
          Length = 886

 Score = 40.0 bits (92), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 33/135 (24%), Positives = 65/135 (48%), Gaps = 11/135 (8%)

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGII 142
           +A ++S DK  +K ++ SCGVPV    +V+      ++   I  P V+KP  G    G+ 
Sbjct: 212 IAESISRDKDLTKSLLQSCGVPVPEGRMVDSAEDAWEAAEDIGVPVVVKPYDGNHGRGVF 271

Query: 143 --VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE----LTCGVMGDASLDVTEIAVPK 196
             ++ +++   ++   + +   G+ +++E++V G E    +  G +  A++  T   V  
Sbjct: 272 TNLMTREE---VETAYAVAIEEGNGVIVERFVSGNEHRLLVVGGRLAAAAMGETASVVGD 328

Query: 197 SDFYSYELKYSSLNS 211
                 EL  S +NS
Sbjct: 329 GTSTIEELIESQINS 343


>gi|227488279|ref|ZP_03918595.1| carbamoyl-phosphate-synthetase [Corynebacterium glucuronolyticum
           ATCC 51867]
 gi|227091849|gb|EEI27161.1| carbamoyl-phosphate-synthetase [Corynebacterium glucuronolyticum
           ATCC 51867]
          Length = 400

 Score = 40.0 bits (92), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 49/212 (23%), Positives = 98/212 (46%), Gaps = 15/212 (7%)

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---ISPPYVIKPLKGGSSLG 140
           + A+ LS +K+  K+V++  GV + P   V R   +   +   +S P VIK      S G
Sbjct: 97  VAAAQLSQNKIAMKRVLADHGV-MTPQFRVIRTLSELGDVCAELSFPLVIKAPDLQGSNG 155

Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFY 200
           I ++K D+   +  + +   +  + L++E+++DG E     +    LD   + V      
Sbjct: 156 IFIVKDDEEAQVAFVGAQQASKQESLIVEEFIDGTEFGAQAI---VLDNEILFVLCHGDE 212

Query: 201 SYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRS-DFLFDPLSRKVFW 259
           +   K +++  +H +PA +P +I +        A +A+G +  + + D + D  S+    
Sbjct: 213 TVRAK-TNIPISHFVPANLPEEIQQRATTEVKKAIRALGLKNCAVNVDLILD--SQGCHI 269

Query: 260 LEINVQPGMTPVSIFPEMAA-YAGYSFRELLL 290
           +E+    G    +  PE+   + G  + EL+L
Sbjct: 270 IELT---GRVGANGLPEVVGKWFGIDYYELIL 298


>gi|301632899|ref|XP_002945517.1| PREDICTED: cyanophycin synthetase-like [Xenopus (Silurana)
           tropicalis]
          Length = 582

 Score = 40.0 bits (92), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 31/135 (22%), Positives = 61/135 (45%), Gaps = 5/135 (3%)

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF--T 117
           GN  + G   A   +       +  +A  ++ DK  +K+++++CGVPV    +V      
Sbjct: 265 GNLVQLGYGAAQRRIWTAESDQTSAIAEGIAQDKDFTKRLLAACGVPVPEGRVVAHAEEA 324

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIV-IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
            +    I  P  +KP  G  + G+ + +  +  I      +     G ++++EQ++DGIE
Sbjct: 325 WEVAQDIGGPVTVKPSDGNHARGVTLELTGEAEIKAAFALAEP--EGSEVIVEQFIDGIE 382

Query: 177 LTCGVMGDASLDVTE 191
               V+G   +  T+
Sbjct: 383 HRLLVVGGKVVAATK 397


>gi|119776292|ref|YP_929032.1| ribosomal protein S6 modification protein [Shewanella amazonensis
           SB2B]
 gi|190360192|sp|A1SAF6|RIMK2_SHEAM RecName: Full=Ribosomal protein S6 modification protein 2
 gi|119768792|gb|ABM01363.1| ribosomal protein S6 modification protein [Shewanella amazonensis
           SB2B]
          Length = 301

 Score = 40.0 bits (92), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 42/187 (22%), Positives = 90/187 (48%), Gaps = 20/187 (10%)

Query: 88  ALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLIS-PPYVIKPLKGGSSLGIIVI 144
           A S DK+R+ Q++S  G+ +  +   N+     D  +++   P VIK L+G   +G+++ 
Sbjct: 95  ARSRDKLRALQLLSRKGIGMPVTGFANKPNNIPDLINMVGGAPLVIKLLEGTQGIGVVLA 154

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYV---DGIELTCGVMGDASLDVTEIAVPKSDFYS 201
           +  ++   + +  +       +++++Y+   +G ++ C V+GD  +       P+ DF S
Sbjct: 155 ETRKA--AESVIEAFLGLKANIMVQEYIKEANGSDIRCFVVGDKVVAAMRRQGPEGDFRS 212

Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
                    + H+  +  P+ I  + ++ A  A +A+G   ++  D L    +R    LE
Sbjct: 213 ---------NLHLGGSAEPVKITPQERKSAVAAAKAMGLV-VAGVDILRS--ARGPLVLE 260

Query: 262 INVQPGM 268
           +N  PG+
Sbjct: 261 VNSAPGI 267


>gi|170768946|ref|ZP_02903399.1| ribosomal protein S6 modification protein [Escherichia albertii
           TW07627]
 gi|170122018|gb|EDS90949.1| ribosomal protein S6 modification protein [Escherichia albertii
           TW07627]
          Length = 314

 Score = 40.0 bits (92), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 42/191 (21%), Positives = 86/191 (45%), Gaps = 22/191 (11%)

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSLG 140
           +A A + DK+RS Q+++  G+ + P   +     D+  LI      P V+K ++G   +G
Sbjct: 106 VAIARARDKLRSMQLLARQGIDL-PVTGIAHSPDDTSDLIEMVGGAPLVVKLVEGTQGIG 164

Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV---DGIELTCGVMGDASLDVTEIAVPKS 197
           +++ +  Q+    +      N    +L+++Y+    G ++ C V+GD  +   E    + 
Sbjct: 165 VVLAETRQAAESVIDAFRGLNA--HILVQEYIKEAQGCDIRCLVVGDEVVAAIERRAKEG 222

Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
           DF S   +  S +  ++ P +  + I K  + +A           ++  D L    +R  
Sbjct: 223 DFRSNLHRGGSASIANITPQEREIAI-KAARTMAL---------DVAGVDIL--RANRGP 270

Query: 258 FWLEINVQPGM 268
             +E+N  PG+
Sbjct: 271 LVMEVNASPGL 281


>gi|197122687|ref|YP_002134638.1| alpha-L-glutamate ligase, RimK family [Anaeromyxobacter sp. K]
 gi|196172536|gb|ACG73509.1| alpha-L-glutamate ligase, RimK family [Anaeromyxobacter sp. K]
          Length = 313

 Score = 40.0 bits (92), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 56/106 (52%), Gaps = 6/106 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQHLISP-PY 128
           LELL IP  + G    A S +KMRS Q++S+ GVPV  +++ +  +   D   L+   P 
Sbjct: 80  LELLGIPALN-GAYGIAASRNKMRSLQMLSAAGVPVPRTVMASDPSGLKDMARLVGGVPV 138

Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
           ++K L      G+++ +  QS+   L   +    G  ++++QY+ G
Sbjct: 139 LVKLLSTSEKSGVMICETLQSLEAAL--EAILGLGQNIVVQQYLKG 182


>gi|121593082|ref|YP_984978.1| cyanophycin synthetase [Acidovorax sp. JS42]
 gi|120605162|gb|ABM40902.1| cyanophycin synthetase [Acidovorax sp. JS42]
          Length = 727

 Score = 40.0 bits (92), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 30/135 (22%), Positives = 61/135 (45%), Gaps = 5/135 (3%)

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF--T 117
           GN  + G   A   +       +  +A  ++ DK  +K++++SCGVPV    +V      
Sbjct: 188 GNLVQLGYGAAQRRIWTAESDQTSAIAEGIAQDKDFTKRLLASCGVPVPEGQIVRNADEA 247

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIV-IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
            +    I  P  +KP  G  + G+ + + ++  I      +     G  +++E+++DG+E
Sbjct: 248 WEVAQEIGLPVTVKPSDGNHARGVTLELSREADIKAAFALAEP--EGSDVIVEKFIDGVE 305

Query: 177 LTCGVMGDASLDVTE 191
               V+G   +  T+
Sbjct: 306 HRLLVVGGKVVAATK 320


>gi|240850674|ref|YP_002972074.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Bartonella
           grahamii as4aup]
 gi|240267797|gb|ACS51385.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Bartonella
           grahamii as4aup]
          Length = 452

 Score = 40.0 bits (92), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 46/218 (21%), Positives = 95/218 (43%), Gaps = 19/218 (8%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP----SILVN 114
           +G   E+     +LE  +I +         +  DK+ +K+     G+PV P    ++   
Sbjct: 82  YGFLSENAKFADVLEAHDITFIGPTATHIRIMGDKIEAKKTAKKLGIPVVPGSDGAVTEE 141

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG----DQLLIEQ 170
              + +   I  P +IK   GG   G+ V+  +Q   + L  + S        D + IE+
Sbjct: 142 SDALRTAREIGYPVIIKASAGGGGRGMKVVHSEQEFSIALKTTRSEAKAAFGDDAVYIEK 201

Query: 171 YVDG---IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227
           Y++    IE+   V+GD + +   I + + D  S + ++  +      PA    +  K++
Sbjct: 202 YLEKPRHIEIQ--VIGDGAGNA--IHLGERDC-SLQRRHQKVWEEATSPALNETE-RKKI 255

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             +   A   +G RG    +FL++  + + +++E+N +
Sbjct: 256 GSIVANACAQLGYRGAGTIEFLYE--NGEFYFIEMNTR 291


>gi|220917470|ref|YP_002492774.1| alpha-L-glutamate ligase, RimK family [Anaeromyxobacter
           dehalogenans 2CP-1]
 gi|219955324|gb|ACL65708.1| alpha-L-glutamate ligase, RimK family [Anaeromyxobacter
           dehalogenans 2CP-1]
          Length = 313

 Score = 40.0 bits (92), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 56/106 (52%), Gaps = 6/106 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQHLISP-PY 128
           LELL IP  + G    A S +KMRS Q++S+ GVPV  +++ +  +   D   L+   P 
Sbjct: 80  LELLGIPALN-GAYGIAASRNKMRSLQMLSAAGVPVPRTVMASDPSGLKDMARLVGGVPV 138

Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
           ++K L      G+++ +  QS+   L   +    G  ++++QY+ G
Sbjct: 139 LVKLLSTSEKSGVMICETLQSLEAAL--EAILGLGQNIVVQQYLKG 182


>gi|239942496|ref|ZP_04694433.1| hypothetical protein SrosN15_15973 [Streptomyces roseosporus NRRL
           15998]
 gi|239988960|ref|ZP_04709624.1| hypothetical protein SrosN1_16740 [Streptomyces roseosporus NRRL
           11379]
 gi|291445952|ref|ZP_06585342.1| predicted protein [Streptomyces roseosporus NRRL 15998]
 gi|291348899|gb|EFE75803.1| predicted protein [Streptomyces roseosporus NRRL 15998]
          Length = 420

 Score = 40.0 bits (92), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 23/94 (24%), Positives = 45/94 (47%), Gaps = 1/94 (1%)

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIV 143
           +  + L  DK+  K  + + G+PV  ++ +      ++  +SPP+V+KP  G  +    V
Sbjct: 115 VRTAVLLRDKVAQKNALRAAGLPVADTLAIGDLGELAEPPMSPPFVVKPPLGAGTTDTWV 174

Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
           ++ +  I   LL S   +      +E +V G E+
Sbjct: 175 LRDEAEIAA-LLGSRGRDTAGPWAVESFVTGHEV 207


>gi|86158006|ref|YP_464791.1| S6 modification enzyme RimK [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85774517|gb|ABC81354.1| S6 modification enzyme RimK [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 313

 Score = 40.0 bits (92), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 56/106 (52%), Gaps = 6/106 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQHLISP-PY 128
           LELL IP  + G    A S +KMRS Q++S+ GVPV  +++ +  +   D   L+   P 
Sbjct: 80  LELLGIPALN-GAYGIAASRNKMRSLQMLSAAGVPVPRTVMASDPSGLKDMARLVGGVPV 138

Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
           ++K L      G+++ +  QS+   L   +    G  ++++QY+ G
Sbjct: 139 LVKLLSTSEKSGVMICETLQSLEAAL--EAILGLGQNIVVQQYLKG 182


>gi|118378204|ref|XP_001022278.1| Carbamoyl-phosphate synthase L chain, ATP binding domain containing
           protein [Tetrahymena thermophila]
 gi|89304045|gb|EAS02033.1| Carbamoyl-phosphate synthase L chain, ATP binding domain containing
           protein [Tetrahymena thermophila SB210]
          Length = 673

 Score = 40.0 bits (92), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 39/183 (21%), Positives = 79/183 (43%), Gaps = 16/183 (8%)

Query: 93  KMRSKQVVSSCGVPVCPSILVNR----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQ 148
           K  SK ++++  VPV P          +  +    I  P +IK + GG   G+ ++ K+ 
Sbjct: 116 KSESKIIMTNAKVPVVPGYHGENQDKDYLFEQARSIGFPVLIKAVLGGGGKGMRIVTKES 175

Query: 149 SIPLDLLQSSSWN-----HGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSY 202
               + L+S+          D++LIE+Y+     +   V GD   +   +        S 
Sbjct: 176 EF-FEALESAKRESLKAFKDDRVLIEKYIQKPRHIEVQVFGDHHGNYVHLFERDC---SI 231

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
           + ++  +      P+ I  D+   +   A  A +A+G       +F+FD +S + +++E+
Sbjct: 232 QRRHQKV--IEEAPSNINWDLRNSIGSSAVDAAKAVGYYNAGTVEFIFDLISNQYYFMEM 289

Query: 263 NVQ 265
           N +
Sbjct: 290 NTR 292


>gi|225683415|gb|EEH21699.1| methylcrotonoyl-CoA carboxylase subunit alpha [Paracoccidioides
           brasiliensis Pb03]
          Length = 754

 Score = 39.7 bits (91), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 45/183 (24%), Positives = 84/183 (45%), Gaps = 13/183 (7%)

Query: 92  DKMRSKQVVSSCGVPVCPSILVNRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKD 147
           DK RSK+++++ GVP  P        MD        I  P +IK +KGG   G+ +    
Sbjct: 183 DKSRSKEIMTTAGVPCVPGYHGENQDMDFLEAEAERIKFPVLIKAVKGGGGKGMRIASSK 242

Query: 148 QSIPLDLL--QSSSWNH--GDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSY 202
           ++    L+  +S + N    D +L+E+Y+     +   V  D   +   +A+ + D  S 
Sbjct: 243 ETFRDQLISAKSEAMNSFGNDTMLVEKYITTPRHIEVQVFADKHGNC--VALGERD-CSI 299

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
           + ++  +      P  +P    K++   A  A  A+G  G    +F+FD  + + F++E+
Sbjct: 300 QRRHQKILEESPAP-HLPEATRKDIWDRARAAALAVGYEGAGTVEFIFDNDTGEFFFMEM 358

Query: 263 NVQ 265
           N +
Sbjct: 359 NTR 361


>gi|192360281|ref|YP_001983182.1| urea amidolyase-like protein [Cellvibrio japonicus Ueda107]
 gi|190686446|gb|ACE84124.1| urea amidolyase homolog [Cellvibrio japonicus Ueda107]
          Length = 1205

 Score = 39.7 bits (91), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 41/186 (22%), Positives = 81/186 (43%), Gaps = 22/186 (11%)

Query: 93  KMRSKQVVSSCGVPVCPSI-LVNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQS 149
           K +++++  + GVP+CP   L+      +Q  + I  P ++K   GG  +G+ +   D  
Sbjct: 116 KHKARELAQAAGVPLCPGTDLLPSLEDATQAANCIGYPVMLKSTAGGGGIGMQLCHSDSE 175

Query: 150 I--PLDLLQSSSWNH--GDQLLIEQYVDGIE-LTCGVMGDASLDVTEIAVPKSDFYSYEL 204
           +    D ++    N+   D + +E+++     +   V GD     T +A+ + D      
Sbjct: 176 LIAAFDSVKRLGKNNFADDGVFLEKFIAAARHIEVQVFGDGQ--GTAVAIGERDC----- 228

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAF--LAHQAIGC---RGISRSDFLFDPLSRKVFW 259
             SS      +  + P     E QR A   +A Q +     R     +F++D L  + ++
Sbjct: 229 --SSQRRNQKVVEECPAPNLPEAQRQAMQQVAEQLLASVCYRNAGTVEFIYDSLDNRFYF 286

Query: 260 LEINVQ 265
           LE+N +
Sbjct: 287 LEVNTR 292


>gi|52840659|ref|YP_094458.1| glutathione synthase, ribosomal protein S6 modification protein
           [Legionella pneumophila subsp. pneumophila str.
           Philadelphia 1]
 gi|54293408|ref|YP_125823.1| hypothetical protein lpl0457 [Legionella pneumophila str. Lens]
 gi|54296450|ref|YP_122819.1| hypothetical protein lpp0481 [Legionella pneumophila str. Paris]
 gi|148360969|ref|YP_001252176.1| glutathione synthase, ribosomal protein S6 modification protein
           [Legionella pneumophila str. Corby]
 gi|296105965|ref|YP_003617665.1| ribosomal protein S6 modification protein [Legionella pneumophila
           2300/99 Alcoy]
 gi|81601534|sp|Q5WZC5|RIMK_LEGPL RecName: Full=Ribosomal protein S6 modification protein
 gi|81602014|sp|Q5X7X4|RIMK_LEGPA RecName: Full=Ribosomal protein S6 modification protein
 gi|81603541|sp|Q5ZYF8|RIMK_LEGPH RecName: Full=Ribosomal protein S6 modification protein
 gi|166977484|sp|A5IHI0|RIMK_LEGPC RecName: Full=Ribosomal protein S6 modification protein
 gi|52627770|gb|AAU26511.1| glutathione synthase, ribosomal protein S6 modification protein
           [Legionella pneumophila subsp. pneumophila str.
           Philadelphia 1]
 gi|53750235|emb|CAH11629.1| hypothetical protein lpp0481 [Legionella pneumophila str. Paris]
 gi|53753240|emb|CAH14687.1| hypothetical protein lpl0457 [Legionella pneumophila str. Lens]
 gi|148282742|gb|ABQ56830.1| glutathione synthase, ribosomal protein S6 modification protein
           [Legionella pneumophila str. Corby]
 gi|295647866|gb|ADG23713.1| ribosomal protein S6 modification protein [Legionella pneumophila
           2300/99 Alcoy]
          Length = 302

 Score = 39.7 bits (91), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 44/197 (22%), Positives = 92/197 (46%), Gaps = 22/197 (11%)

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI----SPPYVIKPLK 134
           YT +  +A + S DK RS Q+++  G+P+ P     +   D++ LI      P VIK L+
Sbjct: 87  YTLNESIAISRSRDKFRSLQLLARKGIPM-PLTSFAQSPDDTEDLIHMVGGAPLVIKLLE 145

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD---GIELTCGVMGDASLDVTE 191
           G    G+I+    QS  + ++ +    H + +L++++++   G ++ C V+G+  +   +
Sbjct: 146 GTQGKGVILADSHQS-AVSIINAFKEMHAN-ILVQEFIEESRGTDIRCFVIGEKVVAAVK 203

Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
                 +F +         + H     + + +  + + +A  A + +G R ++  D +  
Sbjct: 204 RQAKDGEFRA---------NVHQGGKAVKVKLSPQERAIAVSAAKTMGLR-VAGVDLIRS 253

Query: 252 PLSRKVFWLEINVQPGM 268
             +     LEIN  PG+
Sbjct: 254 --NHGPLVLEINSSPGL 268


>gi|307609223|emb|CBW98687.1| hypothetical protein LPW_04961 [Legionella pneumophila 130b]
          Length = 304

 Score = 39.7 bits (91), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 44/197 (22%), Positives = 92/197 (46%), Gaps = 22/197 (11%)

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI----SPPYVIKPLK 134
           YT +  +A + S DK RS Q+++  G+P+ P     +   D++ LI      P VIK L+
Sbjct: 89  YTLNESIAISRSRDKFRSLQLLARKGIPM-PLTSFAQSPDDTEDLIHMVGGAPLVIKLLE 147

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD---GIELTCGVMGDASLDVTE 191
           G    G+I+    QS  + ++ +    H + +L++++++   G ++ C V+G+  +   +
Sbjct: 148 GTQGKGVILADSHQS-AVSIINAFKEMHAN-ILVQEFIEESRGTDIRCFVIGEKVVAAVK 205

Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
                 +F +         + H     + + +  + + +A  A + +G R ++  D +  
Sbjct: 206 RQAKDGEFRA---------NVHQGGKAVKVKLSPQERAIAVSAAKTMGLR-VAGVDLIRS 255

Query: 252 PLSRKVFWLEINVQPGM 268
             +     LEIN  PG+
Sbjct: 256 --NHGPLVLEINSSPGL 270


>gi|260655589|ref|ZP_05861077.1| phosphoribosylamine--glycine ligase [Jonquetella anthropi E3_33 E1]
 gi|260630037|gb|EEX48231.1| phosphoribosylamine--glycine ligase [Jonquetella anthropi E3_33 E1]
          Length = 428

 Score = 39.7 bits (91), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 33/110 (30%), Positives = 54/110 (49%), Gaps = 8/110 (7%)

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS---PPYVIKPLKGGSSL 139
           G   + L  DK  +K  + + GVP   S+L  R T +++  +S   PPYV+K     +  
Sbjct: 96  GAAGARLESDKAFAKDFMRAAGVPTARSVLC-RSTAEAEAALSQFVPPYVVKATGLAAGK 154

Query: 140 GIIV---IKKDQSIPLDLLQSSSWN-HGDQLLIEQYVDGIELTCGVMGDA 185
           G+ V   +    S    LLQ  +    G+Q+LIE+ + G EL+  ++ D 
Sbjct: 155 GVFVEPELSGALSACRQLLQDRTLGAAGEQVLIEEGLTGRELSVMIVTDG 204


>gi|222109852|ref|YP_002552116.1| cyanophycin synthetase [Acidovorax ebreus TPSY]
 gi|221729296|gb|ACM32116.1| cyanophycin synthetase [Acidovorax ebreus TPSY]
          Length = 723

 Score = 39.7 bits (91), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 30/135 (22%), Positives = 61/135 (45%), Gaps = 5/135 (3%)

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF--T 117
           GN  + G   A   +       +  +A  ++ DK  +K++++SCGVPV    +V      
Sbjct: 188 GNLVQLGYGAAQRRIWTAESDQTSAIAEGIAQDKDFTKRLLASCGVPVPEGQIVRNADEA 247

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIV-IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
            +    I  P  +KP  G  + G+ + + ++  I      +     G  +++E+++DG+E
Sbjct: 248 WEVAQEIGFPVTVKPSDGNHARGVTLELSREADIKAAFALAEP--EGSDVIVEKFIDGVE 305

Query: 177 LTCGVMGDASLDVTE 191
               V+G   +  T+
Sbjct: 306 HRLLVVGGKVVAATK 320


>gi|323358082|ref|YP_004224478.1| acetyl/propionyl-CoA carboxylase, alpha subunit [Microbacterium
           testaceum StLB037]
 gi|323274453|dbj|BAJ74598.1| acetyl/propionyl-CoA carboxylase, alpha subunit [Microbacterium
           testaceum StLB037]
          Length = 684

 Score = 39.7 bits (91), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 48/219 (21%), Positives = 86/219 (39%), Gaps = 18/219 (8%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
           +G   E+       E   I +   G  A  +  DK+ +K  V + GVP  P   V R  M
Sbjct: 82  YGFLAENAAFARACEEAGIVFVGPGAEAIRVMGDKITAKHAVEARGVPTVPG--VARAGM 139

Query: 119 DSQHLISP------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG----DQLLI 168
               LI+       P +IKP  GG   G+ V+++  ++P  +  +          D L +
Sbjct: 140 TDDELIAAGEEVGYPLLIKPSAGGGGKGMHVVEESAALPEAISAARREAAASFGDDTLFL 199

Query: 169 EQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227
           E+YV     +   V+ DA   V  +   +        K      + +L A    +    +
Sbjct: 200 ERYVRSPRHIEVQVLADAHGGVVHLGERECSLQRRHQKVIEEAPSPLLDA----ETRARI 255

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLS-RKVFWLEINVQ 265
            R A    +++  RG    +F+    +  + F++E+N +
Sbjct: 256 GRAACETARSVDYRGAGTVEFIVSAEAPGEFFFMEMNTR 294


>gi|226287033|gb|EEH42546.1| methylcrotonoyl-CoA carboxylase subunit alpha [Paracoccidioides
           brasiliensis Pb18]
          Length = 716

 Score = 39.7 bits (91), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 45/183 (24%), Positives = 84/183 (45%), Gaps = 13/183 (7%)

Query: 92  DKMRSKQVVSSCGVPVCPSILVNRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKD 147
           DK RSK+++++ GVP  P        MD        I  P +IK +KGG   G+ +    
Sbjct: 132 DKSRSKEIMTTAGVPCVPGYHGENQDMDFLEAEAERIKFPVLIKAVKGGGGKGMRIASSK 191

Query: 148 QSIPLDLL--QSSSWNH--GDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSY 202
           ++    L+  +S + N    D +L+E+Y+     +   V  D   +   +A+ + D  S 
Sbjct: 192 ETFRDQLISAKSEAMNSFGNDTMLVEKYITTPRHIEVQVFADKHGNC--VALGERD-CSI 248

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
           + ++  +      P  +P    K++   A  A  A+G  G    +F+FD  + + F++E+
Sbjct: 249 QRRHQKILEESPAP-HLPEATRKDIWDRARAAALAVGYEGAGTVEFIFDNDTGEFFFMEM 307

Query: 263 NVQ 265
           N +
Sbjct: 308 NTR 310


>gi|327352746|gb|EGE81603.1| 3-methylcrotonyl-CoA carboxylase subunit alpha [Ajellomyces
           dermatitidis ATCC 18188]
          Length = 724

 Score = 39.7 bits (91), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 42/183 (22%), Positives = 75/183 (40%), Gaps = 13/183 (7%)

Query: 92  DKMRSKQVVSSCGVPVCPSILVNRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKD 147
           DK RSK+++++ GVP  P        MD        I  P +IK +KGG   G+ +    
Sbjct: 153 DKSRSKEIMTAAGVPCVPGYHGENQNMDFLEAEAEKIKFPVLIKAVKGGGGKGMRIASSK 212

Query: 148 QSIPLDLLQSSSWNHG----DQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSY 202
           ++    L+ + S        D +L+E+Y+     +   V  D   +   +          
Sbjct: 213 ETFRDQLISAKSEAMNSFGDDTMLVEKYITTPRHIEVQVFADKHGNCVALGERDCSIQRR 272

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
             K    +    LP     DI+ + +  A     A+G  G    +F+FD  + + F++E+
Sbjct: 273 HQKILEESPAPHLPEATRKDIWDKARSAAL----AVGYEGAGTVEFIFDNDTGEFFFMEM 328

Query: 263 NVQ 265
           N +
Sbjct: 329 NTR 331


>gi|312136984|ref|YP_004004321.1| hypothetical protein Mfer_0760 [Methanothermus fervidus DSM 2088]
 gi|311224703|gb|ADP77559.1| protein of unknown function DUF201 [Methanothermus fervidus DSM
           2088]
          Length = 367

 Score = 39.7 bits (91), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 35/152 (23%), Positives = 69/152 (45%), Gaps = 20/152 (13%)

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           ++ P V+K  KG +  G++V      I   L +         +L+E++++GIE++  V+ 
Sbjct: 134 VTKPVVLKNKKGQAGTGVVVTNSKDEITEYLKKYGV------VLMEEFINGIEISVEVLR 187

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVL------PAKIPLDIYKEVQRLAFLAHQA 237
                +  + V K          ++L + H L      PA+I     ++V   + +   +
Sbjct: 188 WEGKSLALVVVDKG--------RTTLEAVHPLYKIKKAPAQIKGLDNEKVLLFSRMIVNS 239

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
           +   G +  D +FD   RKV+ +E+N +P  T
Sbjct: 240 LNAEGNTDIDMIFDEKLRKVYAIELNTRPSGT 271


>gi|163840600|ref|YP_001625005.1| phosphoribosylamine--glycine ligase [Renibacterium salmoninarum
           ATCC 33209]
 gi|162954076|gb|ABY23591.1| phosphoribosylamine--glycine ligase [Renibacterium salmoninarum
           ATCC 33209]
          Length = 434

 Score = 39.7 bits (91), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 71/157 (45%), Gaps = 17/157 (10%)

Query: 77  IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI------SPPYVI 130
           IP       A+ L   K  +KQV++S  VP      + R   DS   +        PYV+
Sbjct: 87  IPVFGPSQAAAELEGSKAFAKQVMASASVPTA----MARVATDSAEALEALDTFGAPYVV 142

Query: 131 KPLKGGSSLGIIVIK-KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           K     +  G++V   +D+++       + ++ G  ++IE+++DG E++  V+ D + DV
Sbjct: 143 KDDGLAAGKGVVVTSDRDEAL---AHAQTCFDAGGTVVIEEFLDGPEVSLFVLSDGA-DV 198

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE 226
             +A P  DF     +    N T  + A  PLD   E
Sbjct: 199 VPLA-PAQDFKRIFDQDEGPN-TGGMGAYTPLDWVPE 233


>gi|332293409|ref|YP_004432018.1| protein of unknown function DUF201 [Krokinobacter diaphorus
           4H-3-7-5]
 gi|332171495|gb|AEE20750.1| protein of unknown function DUF201 [Krokinobacter diaphorus
           4H-3-7-5]
          Length = 388

 Score = 39.7 bits (91), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 31/165 (18%), Positives = 74/165 (44%), Gaps = 11/165 (6%)

Query: 67  LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP 126
           ++  + E L++P+       + +S +K   K++     +P    +         ++L S 
Sbjct: 80  MMARVAETLKLPFISEE--TAIISTNKFLMKELFLKNNLPCAKGV---ELAAAKEYLGSF 134

Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC-GVMGDA 185
           P +IKPL    S G+++      + ++ + +  +   ++LL+E++++G E +  G+  + 
Sbjct: 135 PVIIKPLDNSGSRGVVLCTTMDDLRVNFVDTFKYTKKNKLLVEEFIEGKEYSIEGLHFNG 194

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
           +  V      ++  + Y ++       H  PA +  DI  E+  L
Sbjct: 195 NHKVIAYTEKETTPFPYNVELG-----HKQPANLSDDIKLEISDL 234


>gi|261202142|ref|XP_002628285.1| 3-methylcrotonyl-CoA carboxylase subunit alpha [Ajellomyces
           dermatitidis SLH14081]
 gi|239590382|gb|EEQ72963.1| 3-methylcrotonyl-CoA carboxylase subunit alpha [Ajellomyces
           dermatitidis SLH14081]
          Length = 713

 Score = 39.7 bits (91), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 42/183 (22%), Positives = 75/183 (40%), Gaps = 13/183 (7%)

Query: 92  DKMRSKQVVSSCGVPVCPSILVNRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKD 147
           DK RSK+++++ GVP  P        MD        I  P +IK +KGG   G+ +    
Sbjct: 153 DKSRSKEIMTAAGVPCVPGYHGENQNMDFLEAEAEKIKFPVLIKAVKGGGGKGMRIASSK 212

Query: 148 QSIPLDLLQSSSWNHG----DQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSY 202
           ++    L+ + S        D +L+E+Y+     +   V  D   +   +          
Sbjct: 213 ETFRDQLISAKSEAMNSFGDDTMLVEKYITTPRHIEVQVFADKHGNCVALGERDCSIQRR 272

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
             K    +    LP     DI+ + +  A     A+G  G    +F+FD  + + F++E+
Sbjct: 273 HQKILEESPAPHLPEATRKDIWDKARSAAL----AVGYEGAGTVEFIFDNDTGEFFFMEM 328

Query: 263 NVQ 265
           N +
Sbjct: 329 NTR 331


>gi|320034303|gb|EFW16248.1| 3-methylcrotonyl-CoA carboxylase subunit alpha [Coccidioides
           posadasii str. Silveira]
          Length = 711

 Score = 39.7 bits (91), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 42/183 (22%), Positives = 78/183 (42%), Gaps = 13/183 (7%)

Query: 92  DKMRSKQVVSSCGVPVCPSILVNRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKD 147
           DK RSK+++++ GVP  P    +    D        I  P +IK +KGG   G+ +    
Sbjct: 153 DKSRSKEIMTAAGVPCVPGYHGSNQDPDLLQKEADKIGYPVLIKAIKGGGGKGMRICSSR 212

Query: 148 QSIPLDLLQSSSWNHG----DQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSY 202
           ++    L+ + S +      DQ+LIE+Y+     +   V  D   +   +          
Sbjct: 213 ETFQDQLMSAKSESKNSFGDDQVLIEKYITTPRHIEVQVFADKHGNCVALGERDCSIQRR 272

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
             K    +    LP     DI+++ +  A     A+G  G    +F+FD  + + +++E+
Sbjct: 273 HQKILEESPAPHLPQATRKDIWEKARAAAL----AVGYEGAGTVEFIFDNDTGEFYFMEM 328

Query: 263 NVQ 265
           N +
Sbjct: 329 NTR 331


>gi|239612092|gb|EEQ89079.1| 3-methylcrotonyl-CoA carboxylase subunit alpha [Ajellomyces
           dermatitidis ER-3]
          Length = 712

 Score = 39.7 bits (91), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 42/183 (22%), Positives = 75/183 (40%), Gaps = 13/183 (7%)

Query: 92  DKMRSKQVVSSCGVPVCPSILVNRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKD 147
           DK RSK+++++ GVP  P        MD        I  P +IK +KGG   G+ +    
Sbjct: 153 DKSRSKEIMTAAGVPCVPGYHGENQNMDFLEAEAEKIKFPVLIKAVKGGGGKGMRIASSK 212

Query: 148 QSIPLDLLQSSSWNHG----DQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSY 202
           ++    L+ + S        D +L+E+Y+     +   V  D   +   +          
Sbjct: 213 ETFRDQLISAKSEAMNSFGDDTMLVEKYITTPRHIEVQVFADKHGNCVALGERDCSIQRR 272

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
             K    +    LP     DI+ + +  A     A+G  G    +F+FD  + + F++E+
Sbjct: 273 HQKILEESPAPHLPEATRKDIWDKARSAAL----AVGYEGAGTVEFIFDNDTGEFFFMEM 328

Query: 263 NVQ 265
           N +
Sbjct: 329 NTR 331


>gi|294629482|ref|ZP_06708042.1| acetyl/propionyl-CoA carboxylase, alpha subunit [Streptomyces sp.
           e14]
 gi|292832815|gb|EFF91164.1| acetyl/propionyl-CoA carboxylase, alpha subunit [Streptomyces sp.
           e14]
          Length = 654

 Score = 39.7 bits (91), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 52/101 (51%), Gaps = 10/101 (9%)

Query: 83  GILASALSM--DKMRSKQVVSSCGVPVCP----SILVNRFTMDSQHLISPPYVIKPLKGG 136
           G  A A+S+  DK+R+K+ V + GVPV P    S L +    ++   I  P ++KP  GG
Sbjct: 104 GPPADAISLMGDKIRAKETVRAAGVPVVPGSSGSGLSDDQLAEAAREIGMPVLLKPSAGG 163

Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNH----GDQLLIEQYVD 173
              G+ ++++   +  ++  +          D LL+E++VD
Sbjct: 164 GGKGMRLVREADRLAEEIAAARREARASFGDDTLLVERWVD 204


>gi|119183643|ref|XP_001242830.1| hypothetical protein CIMG_06726 [Coccidioides immitis RS]
          Length = 711

 Score = 39.7 bits (91), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 42/183 (22%), Positives = 78/183 (42%), Gaps = 13/183 (7%)

Query: 92  DKMRSKQVVSSCGVPVCPSILVNRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKD 147
           DK RSK+++++ GVP  P    +    D        I  P +IK +KGG   G+ +    
Sbjct: 153 DKSRSKEIMTAAGVPCVPGYHGSNQDPDLLQKEADKIGYPVLIKAIKGGGGKGMRICSSR 212

Query: 148 QSIPLDLLQSSSWNHG----DQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSY 202
           ++    L+ + S +      DQ+LIE+Y+     +   V  D   +   +          
Sbjct: 213 ETFQDQLMSAKSESKNSFGDDQVLIEKYITTPRHIEVQVFADKHGNCVALGERDCSIQRR 272

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
             K    +    LP     DI+++ +  A     A+G  G    +F+FD  + + +++E+
Sbjct: 273 HQKILEESPAPHLPQATRKDIWEKARAAAL----AVGYEGAGTVEFIFDNDTGEFYFMEM 328

Query: 263 NVQ 265
           N +
Sbjct: 329 NTR 331


>gi|18033116|gb|AAL56990.1|AF329282_2 cyanophycin synthetase [Synechococcus sp. MA19]
          Length = 903

 Score = 39.7 bits (91), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 5/67 (7%)

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI----SPPYVIKPLKGG 136
            +GIL   L+ DK  +K+++++ G+PV    ++N F  D +  I      P VIKPL G 
Sbjct: 208 QTGILGVELACDKEATKRILANAGIPVPKGTVIN-FLDDLEEAIEYVGGYPIVIKPLDGN 266

Query: 137 SSLGIIV 143
              GI +
Sbjct: 267 HGRGITI 273


>gi|86131134|ref|ZP_01049733.1| phosphoribosylamine-glycine ligase [Dokdonia donghaensis MED134]
 gi|85818545|gb|EAQ39705.1| phosphoribosylamine-glycine ligase [Dokdonia donghaensis MED134]
          Length = 422

 Score = 39.7 bits (91), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 31/137 (22%), Positives = 59/137 (43%), Gaps = 14/137 (10%)

Query: 64  EDGLVQAILELLEIPYTHSGI-------LASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116
           ED LVQ + +  +   +   +       + +AL   K R+K+ + +  +P          
Sbjct: 71  EDPLVQGVYDFFKADESLKNVAVIGPSKVGAALEGSKERAKEFMMAHNIPTAAYEAFTSE 130

Query: 117 TMDSQH----LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD---QLLIE 169
           T+D        +  PYV+K     +  G+++I   +    +L        GD    ++IE
Sbjct: 131 TLDKGQAFLETLQAPYVLKADGLAAGKGVLIIDNLEEAKQELANMLGGKFGDASATVVIE 190

Query: 170 QYVDGIELTCGVMGDAS 186
           +++DGIEL+  V+ D  
Sbjct: 191 EFLDGIELSVFVLTDGK 207


>gi|282865014|ref|ZP_06274067.1| Carbamoyl-phosphate synthase L chain ATP-binding [Streptomyces sp.
           ACTE]
 gi|282559937|gb|EFB65486.1| Carbamoyl-phosphate synthase L chain ATP-binding [Streptomyces sp.
           ACTE]
          Length = 682

 Score = 39.7 bits (91), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 50/96 (52%), Gaps = 8/96 (8%)

Query: 86  ASALSMDKMRSKQVVSSCGVPVCP----SILVNRFTMDSQHLISPPYVIKPLKGGSSLGI 141
           A AL  DK+R+K+ V++ GVPV P    S L +     S   I  P ++KP  GG   G+
Sbjct: 109 AIALMGDKIRAKETVAAAGVPVVPGSSGSGLTDAQLAGSAREIGMPVLLKPSAGGGGKGM 168

Query: 142 IVIKKDQSIPLDLLQSSSWNHG----DQLLIEQYVD 173
            +++++  +  ++  +          D LL+E+++D
Sbjct: 169 RLVREEALLAEEIAAARREARASFGDDTLLVERWID 204


>gi|303319957|ref|XP_003069978.1| Carbamoyl-phosphate synthase L chain, ATP binding domain containing
           protein [Coccidioides posadasii C735 delta SOWgp]
 gi|240109664|gb|EER27833.1| Carbamoyl-phosphate synthase L chain, ATP binding domain containing
           protein [Coccidioides posadasii C735 delta SOWgp]
          Length = 711

 Score = 39.7 bits (91), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 42/183 (22%), Positives = 78/183 (42%), Gaps = 13/183 (7%)

Query: 92  DKMRSKQVVSSCGVPVCPSILVNRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKD 147
           DK RSK+++++ GVP  P    +    D        I  P +IK +KGG   G+ +    
Sbjct: 153 DKSRSKEIMTAAGVPCVPGYHGSNQDPDLLQKEADKIGYPVLIKAIKGGGGKGMRICSSR 212

Query: 148 QSIPLDLLQSSSWNHG----DQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSY 202
           ++    L+ + S +      DQ+LIE+Y+     +   V  D   +   +          
Sbjct: 213 ETFQDKLMSAKSESKNSFGDDQVLIEKYITTPRHIEVQVFADKHGNCVALGERDCSIQRR 272

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
             K    +    LP     DI+++ +  A     A+G  G    +F+FD  + + +++E+
Sbjct: 273 HQKILEESPAPHLPQATRKDIWEKARAAAL----AVGYEGAGTVEFIFDNDTGEFYFMEM 328

Query: 263 NVQ 265
           N +
Sbjct: 329 NTR 331


>gi|298377508|ref|ZP_06987460.1| ATP-grasp domain protein [Bacteroides sp. 3_1_19]
 gi|298265527|gb|EFI07188.1| ATP-grasp domain protein [Bacteroides sp. 3_1_19]
          Length = 325

 Score = 39.7 bits (91), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 26/98 (26%), Positives = 48/98 (48%), Gaps = 8/98 (8%)

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL--ISPPYVIKPLKGGSSLGIIVIKK 146
           +S+DK++  + +++ G     S            L  IS P  +KP++G +SL I  +  
Sbjct: 115 MSLDKIQMYEWLTTHGYKTAKSYTDKSVFFKDIELGKISYPVFVKPVRGSASLAISKVND 174

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
            ++I L       + H D L+I++++DG E+   V  D
Sbjct: 175 KETIEL------LFAHADNLMIQEFLDGQEIGADVYID 206


>gi|84387437|ref|ZP_00990456.1| D-ala D-ala ligase [Vibrio splendidus 12B01]
 gi|84377690|gb|EAP94554.1| D-ala D-ala ligase [Vibrio splendidus 12B01]
          Length = 384

 Score = 39.7 bits (91), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 41/180 (22%), Positives = 83/180 (46%), Gaps = 23/180 (12%)

Query: 23  ASALEDAGFKVSQI---DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ--AILELLEI 77
           A+AL ++GF++  +   D+D  +   L   K DL      G  G D +    + LE+L +
Sbjct: 55  ANALRESGFELVDVLAEDID--LAKQLESKKIDLVITNSGGLQGFDSMCHLPSTLEMLGV 112

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV----------NRFTMDSQHLISPP 127
           PY     + + +  +K   K  + + G+P  P I +          N+  +D      P 
Sbjct: 113 PYVGHSPMTAGILDNKHLFKHEIKAAGIPTAPFITIGIDEDFDSESNQSALDDIARRFPQ 172

Query: 128 -YVIKPLKGGSSLGI--IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
            +V+KP+ G +S+ +  +  + +    ++ +++++ N    ++IE Y+ G E    V G+
Sbjct: 173 GFVVKPVSGRASIHVYPVFERSELKAVVNKVRNATNN---IVMIEPYLSGREFVVAVAGE 229


>gi|183220731|ref|YP_001838727.1| putative oxidase or carboxylase [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
 gi|189910832|ref|YP_001962387.1| dehydrogenase [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Ames)']
 gi|167775508|gb|ABZ93809.1| Dehydrogenase [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Ames)']
 gi|167779153|gb|ABZ97451.1| Putative oxidase or carboxylase [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
          Length = 750

 Score = 39.7 bits (91), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 38/185 (20%), Positives = 81/185 (43%), Gaps = 11/185 (5%)

Query: 68  VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPP 127
           V A+   L++P        +A +  KMR +       +P    +   +   D+   ++ P
Sbjct: 88  VAAVASALQLPGIRFVDAEAASNKVKMRKRLKEFGLPIPRFAPVWSMQDAKDALDELTFP 147

Query: 128 YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG-DAS 186
            V+KP     + G+I +     + +    +  +    +L++E+Y++G EL+   +     
Sbjct: 148 LVMKPADNMGARGVIKVTNRDDLQVAFRHAKRFCPTGELILEEYMEGPELSVDALAFQGQ 207

Query: 187 LDVTEIA--VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR-GI 243
           + +T IA  + + + Y  E+        H +P+ +P D+  EV+R+     +A+G   G 
Sbjct: 208 IRMTGIADRIIEREPYFIEV-------GHNMPSSLPKDVLDEVERVMAGGMRALGIHLGA 260

Query: 244 SRSDF 248
            + D 
Sbjct: 261 GKGDI 265


>gi|319761498|ref|YP_004125435.1| cyanophycin synthetase [Alicycliphilus denitrificans BC]
 gi|330823367|ref|YP_004386670.1| cyanophycin synthetase [Alicycliphilus denitrificans K601]
 gi|317116059|gb|ADU98547.1| cyanophycin synthetase [Alicycliphilus denitrificans BC]
 gi|329308739|gb|AEB83154.1| cyanophycin synthetase [Alicycliphilus denitrificans K601]
          Length = 726

 Score = 39.7 bits (91), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 30/135 (22%), Positives = 61/135 (45%), Gaps = 5/135 (3%)

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF--T 117
           GN  + G   A   +       +  +A  ++ DK  +K+++++CGVPV    +V      
Sbjct: 188 GNLVQLGYGAAQRRIWTAESDQTSAIAEGIAQDKDFTKRLLAACGVPVPEGRIVKNAEEA 247

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIV-IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
            +    I  P  +KP  G  + G+ + + ++  I      +     G  +++E+++DGIE
Sbjct: 248 WEVAQEIGFPVTVKPSDGNHARGVTLELSREADIKAAFALAEP--EGSDVIVEKFIDGIE 305

Query: 177 LTCGVMGDASLDVTE 191
               V+G   +  T+
Sbjct: 306 HRLLVVGGKVVAATK 320


>gi|150007088|ref|YP_001301831.1| carbamoyl phosphate synthase-like protein [Parabacteroides
           distasonis ATCC 8503]
 gi|149935512|gb|ABR42209.1| carbamoylphosphate synthase large subunit [Parabacteroides
           distasonis ATCC 8503]
          Length = 325

 Score = 39.7 bits (91), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 26/98 (26%), Positives = 48/98 (48%), Gaps = 8/98 (8%)

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL--ISPPYVIKPLKGGSSLGIIVIKK 146
           +S+DK++  + +++ G     S            L  IS P  +KP++G +SL I  +  
Sbjct: 115 MSLDKIQMYEWLTTHGYKTAKSYTDKSVFFKDIELGKISYPVFVKPVRGSASLAISKVND 174

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
            ++I L       + H D L+I++++DG E+   V  D
Sbjct: 175 KETIEL------LFAHADNLMIQEFLDGQEIGADVYID 206


>gi|326485213|gb|EGE09223.1| hypothetical protein TEQG_08173 [Trichophyton equinum CBS 127.97]
          Length = 672

 Score = 39.7 bits (91), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 35/116 (30%), Positives = 60/116 (51%), Gaps = 11/116 (9%)

Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG-VMGDA 185
           P ++KP  G SS G+  +    S+   +  + +  HG +L+IE Y DG E+    ++ D 
Sbjct: 366 PMIVKPCGGWSSEGVHRVDSQTSLEDAVRTALASRHGHELVIEPYCDGPEVDINLILQDG 425

Query: 186 SLDVTEIA--VPKS-DFYSYELKYSSLNSTH----VLPAKIPLDIYKEVQRLAFLA 234
            L   E++  +PK+ D     L   SL++ H    V P+K+P ++  ++ R  FLA
Sbjct: 426 ELLFFEVSDDMPKTADINGQSL--GSLSNFHELYSVFPSKLP-EVELQLLRDTFLA 478


>gi|269836967|ref|YP_003319195.1| carbamoyl-phosphate synthase, large subunit [Sphaerobacter
           thermophilus DSM 20745]
 gi|269786230|gb|ACZ38373.1| carbamoyl-phosphate synthase, large subunit [Sphaerobacter
           thermophilus DSM 20745]
          Length = 1080

 Score = 39.7 bits (91), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 64/272 (23%), Positives = 117/272 (43%), Gaps = 36/272 (13%)

Query: 23  ASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGL---VQAILEL----- 74
           AS + ++  +    D D S  L    L  +  F VL    G DG    V  IL+      
Sbjct: 588 ASIMINSNPETVSTDFDTSDRLYFEPLDEESVFEVLRHESGSDGRAPDVPVILQFGGQTA 647

Query: 75  --LEIPYTHSG--ILASA-----LSMDKMRSKQVVSSCGVPVCPSILVNRF--TMDSQHL 123
             L  P    G  IL SA     ++ D+ R ++ +++ G+P  P   V      ++    
Sbjct: 648 INLSEPLAARGVPILGSAREAIDIAEDRKRFERFLANLGIPQPPGDAVTSLEAAIEVAER 707

Query: 124 ISPPYVIKP--LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
           I  P +++P  + GG ++   V+   + +   L  S +++ G  +LI++Y+ G E+    
Sbjct: 708 IGYPVLVRPSYVLGGRAME--VVHSREYLARYLETSVTFDTGHPVLIDKYLQGKEVEV-- 763

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY-KEVQRLAFLAHQ---A 237
             DA  D  E+ +P    +       S +S  V P    L++Y +EV ++     Q   A
Sbjct: 764 --DAICDGKEVLIPGIMEHIERAGVHSGDSFAVYPG---LNLYPREVDKIVEHTTQIALA 818

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
           +G  G+    ++    + +++ LE+N +   T
Sbjct: 819 LGAVGLINIQYVIH--AGRIYVLEVNPRASRT 848


>gi|326469445|gb|EGD93454.1| hypothetical protein TESG_00999 [Trichophyton tonsurans CBS 112818]
          Length = 663

 Score = 39.7 bits (91), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 35/116 (30%), Positives = 60/116 (51%), Gaps = 11/116 (9%)

Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG-VMGDA 185
           P ++KP  G SS G+  +    S+   +  + +  HG +L+IE Y DG E+    ++ D 
Sbjct: 357 PMIVKPCGGWSSEGVHRVDSQTSLEDAVRTALASRHGHELVIEPYCDGPEVDINLILQDG 416

Query: 186 SLDVTEIA--VPKS-DFYSYELKYSSLNSTH----VLPAKIPLDIYKEVQRLAFLA 234
            L   E++  +PK+ D     L   SL++ H    V P+K+P ++  ++ R  FLA
Sbjct: 417 ELLFFEVSDDMPKTADINGQSL--GSLSNFHELYSVFPSKLP-EVELQLLRDTFLA 469


>gi|113475629|ref|YP_721690.1| cyanophycin synthetase [Trichodesmium erythraeum IMS101]
 gi|110166677|gb|ABG51217.1| cyanophycin synthetase [Trichodesmium erythraeum IMS101]
          Length = 902

 Score = 39.7 bits (91), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 48/102 (47%), Gaps = 10/102 (9%)

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI----SPPYVIKPLKG 135
             +GIL   L+ DK  +K+++   GVPV P   V R+  + Q  I      P VIKPL G
Sbjct: 207 NQTGILGVELACDKEGTKRILKDAGVPV-PRGTVARYFDELQDAIEYVGGYPIVIKPLDG 265

Query: 136 GSSLGIIVIKKD---QSIPLDLLQSSSWNHGDQLLIEQYVDG 174
               GI +  K+        DL + +S      +++E+Y  G
Sbjct: 266 NHGRGITIDVKNWQEAEEAYDLARKASKTK--TVIVERYYTG 305


>gi|304405832|ref|ZP_07387490.1| urea carboxylase [Paenibacillus curdlanolyticus YK9]
 gi|304345075|gb|EFM10911.1| urea carboxylase [Paenibacillus curdlanolyticus YK9]
          Length = 1217

 Score = 39.7 bits (91), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 34/181 (18%), Positives = 75/181 (41%), Gaps = 12/181 (6%)

Query: 93  KMRSKQVVSSCGVPVCPSI-LVNRF--TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS 149
           K  ++++    GVP+ P   L+      + +  +I  P ++K   GG  +G+ V +++Q 
Sbjct: 116 KHSARELAEKAGVPMLPGTPLITELEQAVSAASVIGYPVILKSTAGGGGIGMRVCEEEQE 175

Query: 150 I-----PLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYEL 204
           +      +  L  +++ +G   L +       +   + G+A  +V  +            
Sbjct: 176 LRSAFESVRHLAETNFKNGGVFLEKYIAKARHVEVQIFGNAFGEVVALGERDCSIQRRNQ 235

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K    +        +   +++  + LA  A    G R     +FL+DP S + ++LE+N 
Sbjct: 236 KVIEESPAPKFAQAVRERMFEAARSLAAEA----GYRSAGTVEFLYDPQSSEFYFLEVNT 291

Query: 265 Q 265
           +
Sbjct: 292 R 292


>gi|157092735|gb|ABV22540.1| truncated cyanophycin synthetase [synthetic construct]
          Length = 855

 Score = 39.7 bits (91), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 5/66 (7%)

Query: 82  SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI----SPPYVIKPLKGGS 137
           +GIL   L+ DK  +K+++++ GVPV    ++N F  D +  I      P VIKPL G  
Sbjct: 209 TGILGVELACDKEATKRILAASGVPVPRGTVIN-FLDDLEEAIEYVGGYPIVIKPLDGNH 267

Query: 138 SLGIIV 143
             GI +
Sbjct: 268 GRGITI 273


>gi|149369267|ref|ZP_01889119.1| phosphoribosylamine--glycine ligase [unidentified eubacterium
           SCB49]
 gi|149356694|gb|EDM45249.1| phosphoribosylamine--glycine ligase [unidentified eubacterium
           SCB49]
          Length = 422

 Score = 39.7 bits (91), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 61/136 (44%), Gaps = 14/136 (10%)

Query: 64  EDGLVQAILE-------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116
           ED LVQ I+        L ++         + L   K R+K+ + +  +P          
Sbjct: 71  EDPLVQGIVNYFGETPSLKKVKIIGPSKRGALLEGSKERAKEFMMAHNIPTAAYASFTAE 130

Query: 117 TMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD---QLLIE 169
           T+D+       +SPP+V+K     +  G+++I+       +L    S   GD    ++IE
Sbjct: 131 TLDAGKEFLETLSPPFVLKADGLAAGKGVLIIEDISEAKTELEAMLSGKFGDASTTVVIE 190

Query: 170 QYVDGIELTCGVMGDA 185
           +++DGIEL+  V+ D 
Sbjct: 191 EFLDGIELSVFVLTDG 206


>gi|320010673|gb|ADW05523.1| Carbamoyl-phosphate synthase L chain ATP-binding protein
           [Streptomyces flavogriseus ATCC 33331]
          Length = 682

 Score = 39.7 bits (91), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 53/102 (51%), Gaps = 12/102 (11%)

Query: 83  GILASALSM--DKMRSKQVVSSCGVPVCP----SILVNRFTMDSQHLISPPYVIKPLKGG 136
           G  A A+S+  DK+R+K+ V++ GVPV P    S L +     +   I  P ++KP  GG
Sbjct: 104 GPPAPAISLMGDKIRAKETVAAAGVPVVPGSSGSGLSDARLGAAAREIGMPVLLKPSAGG 163

Query: 137 SSLGIIVIKK-----DQSIPLDLLQSSSWNHGDQLLIEQYVD 173
              G+ ++++     D+         +S+   D LL+E+++D
Sbjct: 164 GGKGMRLVREEALLADEIAAARREARASFGD-DTLLVERWID 204


>gi|157092738|gb|ABV22542.1| truncated cyanophycin synthetase [synthetic construct]
          Length = 849

 Score = 39.7 bits (91), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 5/66 (7%)

Query: 82  SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI----SPPYVIKPLKGGS 137
           +GIL   L+ DK  +K+++++ GVPV    ++N F  D +  I      P VIKPL G  
Sbjct: 209 TGILGVELACDKEATKRILAASGVPVPRGTVIN-FLDDLEEAIEYVGGYPIVIKPLDGNH 267

Query: 138 SLGIIV 143
             GI +
Sbjct: 268 GRGITI 273


>gi|157092729|gb|ABV22536.1| truncated cyanophycin synthetase [synthetic construct]
          Length = 856

 Score = 39.7 bits (91), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 5/66 (7%)

Query: 82  SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI----SPPYVIKPLKGGS 137
           +GIL   L+ DK  +K+++++ GVPV    ++N F  D +  I      P VIKPL G  
Sbjct: 209 TGILGVELACDKEATKRILAASGVPVPRGTVIN-FLDDLEEAIEYVGGYPIVIKPLDGNH 267

Query: 138 SLGIIV 143
             GI +
Sbjct: 268 GRGITI 273


>gi|126436212|ref|YP_001071903.1| carbamoyl-phosphate synthase L chain, ATP-binding [Mycobacterium
           sp. JLS]
 gi|126236012|gb|ABN99412.1| Carbamoyl-phosphate synthase L chain, ATP-binding protein
           [Mycobacterium sp. JLS]
          Length = 662

 Score = 39.3 bits (90), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 46/91 (50%), Gaps = 12/91 (13%)

Query: 92  DKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP------PYVIKPLKGGSSLGIIVIK 145
           DK+ +K  VS+ GVPV P   V+R  +    LI+       P ++KP  GG   G+ V+ 
Sbjct: 116 DKIAAKAAVSAFGVPVVPG--VSRPGLTDDDLIAGAGDVGFPVLVKPSAGGGGKGMRVVH 173

Query: 146 KDQSIPLDLL----QSSSWNHGDQLLIEQYV 172
               +P  L+    ++++    D L +E++V
Sbjct: 174 DPAELPAALVSARREAAAAFGDDTLFLERFV 204


>gi|307152668|ref|YP_003888052.1| cyanophycin synthetase [Cyanothece sp. PCC 7822]
 gi|306982896|gb|ADN14777.1| cyanophycin synthetase [Cyanothece sp. PCC 7822]
          Length = 879

 Score = 39.3 bits (90), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 33/102 (32%), Positives = 49/102 (48%), Gaps = 10/102 (9%)

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP----PYVIKPLKG 135
           T SGILA  L+ DK  +K ++   G+PV P   V ++  + +  I      P VIKPL G
Sbjct: 207 TSSGILAVELACDKEGTKTILQDAGIPV-PKGTVIQYLDELEEAIKDVGGYPIVIKPLDG 265

Query: 136 GSSLGIIV---IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
               GI +     +      DL  ++S N    ++IE+Y  G
Sbjct: 266 NHGRGITIDINSWEQAEEAYDLASAASKNR--SVIIERYYKG 305


>gi|157092726|gb|ABV22534.1| truncated cyanophycin synthetase [synthetic construct]
          Length = 862

 Score = 39.3 bits (90), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 5/66 (7%)

Query: 82  SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI----SPPYVIKPLKGGS 137
           +GIL   L+ DK  +K+++++ GVPV    ++N F  D +  I      P VIKPL G  
Sbjct: 209 TGILGVELACDKEATKRILAASGVPVPRGTVIN-FLDDLEEAIEYVGGYPIVIKPLDGNH 267

Query: 138 SLGIIV 143
             GI +
Sbjct: 268 GRGITI 273


>gi|157092732|gb|ABV22538.1| truncated cyanophycin synthetase [synthetic construct]
          Length = 856

 Score = 39.3 bits (90), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 5/66 (7%)

Query: 82  SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI----SPPYVIKPLKGGS 137
           +GIL   L+ DK  +K+++++ GVPV    ++N F  D +  I      P VIKPL G  
Sbjct: 209 TGILGVELACDKEATKRILAASGVPVPRGTVIN-FLDDLEEAIEYVGGYPIVIKPLDGNH 267

Query: 138 SLGIIV 143
             GI +
Sbjct: 268 GRGITI 273


>gi|160901140|ref|YP_001566722.1| cyanophycin synthetase [Delftia acidovorans SPH-1]
 gi|160366724|gb|ABX38337.1| cyanophycin synthetase [Delftia acidovorans SPH-1]
          Length = 730

 Score = 39.3 bits (90), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 28/126 (22%), Positives = 60/126 (47%), Gaps = 3/126 (2%)

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFT 117
           GN  + G   A   +       +  +A  ++ DK  +K+++++CGVPV    +V+     
Sbjct: 188 GNLVQLGYGAAQRRIWTAESDQTSAIAEGIAQDKDFTKRLLAACGVPVPEGQIVHSPEEA 247

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            +    I  P  +KP  G  + G+ +  +D++  +    + +   G  +++E+++DG E 
Sbjct: 248 WEVAQDIGFPVTVKPSDGNHARGVTLDLRDEA-DIKAAFALAQPEGSDVIVERFIDGTEH 306

Query: 178 TCGVMG 183
              V+G
Sbjct: 307 RILVVG 312


>gi|108800596|ref|YP_640793.1| carbamoyl-phosphate synthase L chain, ATP-binding protein
           [Mycobacterium sp. MCS]
 gi|119869735|ref|YP_939687.1| carbamoyl-phosphate synthase L chain, ATP-binding [Mycobacterium
           sp. KMS]
 gi|108771015|gb|ABG09737.1| Carbamoyl-phosphate synthase L chain, ATP-binding protein
           [Mycobacterium sp. MCS]
 gi|119695824|gb|ABL92897.1| Carbamoyl-phosphate synthase L chain, ATP-binding protein
           [Mycobacterium sp. KMS]
          Length = 662

 Score = 39.3 bits (90), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 46/91 (50%), Gaps = 12/91 (13%)

Query: 92  DKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP------PYVIKPLKGGSSLGIIVIK 145
           DK+ +K  VS+ GVPV P   V+R  +    LI+       P ++KP  GG   G+ V+ 
Sbjct: 116 DKIAAKAAVSAFGVPVVPG--VSRPGLTDDDLIAGAGDVGFPVLVKPSAGGGGKGMRVVH 173

Query: 146 KDQSIPLDLL----QSSSWNHGDQLLIEQYV 172
               +P  L+    ++++    D L +E++V
Sbjct: 174 DPAELPAALVSARREAAAAFGDDTLFLERFV 204


>gi|157092720|gb|ABV22530.1| truncated cyanophycin synthetase [synthetic construct]
 gi|157092723|gb|ABV22532.1| truncated cyanophycin synthetase [synthetic construct]
          Length = 866

 Score = 39.3 bits (90), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 5/66 (7%)

Query: 82  SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI----SPPYVIKPLKGGS 137
           +GIL   L+ DK  +K+++++ GVPV    ++N F  D +  I      P VIKPL G  
Sbjct: 209 TGILGVELACDKEATKRILAASGVPVPRGTVIN-FLDDLEEAIEYVGGYPIVIKPLDGNH 267

Query: 138 SLGIIV 143
             GI +
Sbjct: 268 GRGITI 273


>gi|157092717|gb|ABV22528.1| truncated cyanophycin synthetase [synthetic construct]
          Length = 870

 Score = 39.3 bits (90), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 5/66 (7%)

Query: 82  SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI----SPPYVIKPLKGGS 137
           +GIL   L+ DK  +K+++++ GVPV    ++N F  D +  I      P VIKPL G  
Sbjct: 209 TGILGVELACDKEATKRILAASGVPVPRGTVIN-FLDDLEEAIEYVGGYPIVIKPLDGNH 267

Query: 138 SLGIIV 143
             GI +
Sbjct: 268 GRGITI 273


>gi|134096474|ref|YP_001101549.1| cyanophycin synthetase [Herminiimonas arsenicoxydans]
 gi|133740377|emb|CAL63428.1| putative Cyanophycin synthetase [Herminiimonas arsenicoxydans]
          Length = 722

 Score = 39.3 bits (90), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 39/142 (27%), Positives = 63/142 (44%), Gaps = 17/142 (11%)

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF--TMDSQHLISPPYVIKPLKGGSS 138
            +  +A  +S DK  +K ++ SCGVPV    +VN      ++   I  P VIKPL G   
Sbjct: 208 QTSAIAETISSDKELTKTLLQSCGVPVPEGRIVNSAADAWEAAESIGLPVVIKPLDGNHG 267

Query: 139 LGI---IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL------DV 189
            G+   +    D      L +  S      +++E+++ G E    ++G   +      + 
Sbjct: 268 RGVSTNLNTAADIEAAFLLAEQES----SDVIVERFIRGNEHRLLIVGGKLVAAARGEEA 323

Query: 190 TEIAVPKSDFYSYELKYSSLNS 211
           T +A  KS    +EL  S LNS
Sbjct: 324 TIVADGKSSI--FELINSQLNS 343


>gi|296131673|ref|YP_003638920.1| cyanophycin synthetase [Thermincola sp. JR]
 gi|296030251|gb|ADG81019.1| cyanophycin synthetase [Thermincola potens JR]
          Length = 890

 Score = 39.3 bits (90), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 24/96 (25%), Positives = 51/96 (53%), Gaps = 5/96 (5%)

Query: 82  SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF---TMDSQHLISPPYVIKPLKGGSS 138
           +G +   ++ DK+ +KQ++S  G+PV P+  V R     +D    I+   VIKP  G   
Sbjct: 204 TGCIGVDIAGDKILTKQILSEAGIPV-PNGGVARTEKEALDIMKRINNAVVIKPFNGNQG 262

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
            G+ +  + +   +    + + N+ D++++E+++ G
Sbjct: 263 KGVALNLRSEG-EVKKAYAVATNYSDRVIVEKFITG 297


>gi|163868281|ref|YP_001609490.1| acetyl-CoA carboxylase biotin carboxylase subunit [Bartonella
           tribocorum CIP 105476]
 gi|161017937|emb|CAK01495.1| Biotin carboxylase [Bartonella tribocorum CIP 105476]
          Length = 452

 Score = 39.3 bits (90), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 46/218 (21%), Positives = 95/218 (43%), Gaps = 19/218 (8%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP----SILVN 114
           +G   E+     +LE  +I +         +  DK+ +K+     G+PV P    ++   
Sbjct: 82  YGFLSENAKFADVLEAHDITFIGPTAAHIRIMGDKIEAKKTAQKLGIPVVPGSDGAVSEE 141

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG----DQLLIEQ 170
              + +   I  P +IK   GG   G+ V+  +Q   + L  + S        D + IE+
Sbjct: 142 SDALRTAREIGYPVIIKASAGGGGRGMKVVHSEQEFSIALKTTRSEAKAAFGDDAVYIEK 201

Query: 171 YVDG---IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227
           Y++    IE+   V+GD + +   I + + D  S + ++  +      PA    +  K++
Sbjct: 202 YLEKPRHIEIQ--VIGDGAGNA--IHLGERDC-SIQRRHQKVWEEATSPALNETE-RKKI 255

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             +   A   +G RG    +FL++  + + +++E+N +
Sbjct: 256 GSIVANACAELGYRGAGTVEFLYE--NGEFYFIEMNTR 291


>gi|218883941|ref|YP_002428323.1| Carbamoyl-phosphate synthase L chain, ATP-binding [Desulfurococcus
           kamchatkensis 1221n]
 gi|218765557|gb|ACL10956.1| Carbamoyl-phosphate synthase L chain, ATP-binding [Desulfurococcus
           kamchatkensis 1221n]
          Length = 502

 Score = 39.3 bits (90), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 44/193 (22%), Positives = 88/193 (45%), Gaps = 23/193 (11%)

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP---PYVIKPLKG--GSSLGIIV 143
            + DK+  K +     +P  P  LV +   D +  +     P ++KP+KG  G  L I+ 
Sbjct: 106 FARDKLAVKTLAEKLEIPTLPWSLV-KNEEDLEEFVRTYGYPLILKPVKGNWGRGLRILW 164

Query: 144 IKKDQSIPLDLLQSSSWNHGD-QLLIEQYVDGIE-LTCGVMGDASLDVTEIAVPKSDFYS 201
            +KD+     L++ +   + D ++ +E Y+  ++ +   ++GD    +          Y 
Sbjct: 165 SEKDRDQLKTLIKEAEKIYRDSRIYVEPYITNVKHIEIQLIGDGEKVI--------HLYD 216

Query: 202 YELKYSSLNSTHVL---PAKIPLDIYKE-VQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
            E      N   +L   P+ + ++  +E +   A    +A+  R ++  +FL+D  SR V
Sbjct: 217 RECSIQD-NYMKILVEAPSTLQVNGLREKILNYALSIGEAMRLRNLATIEFLYDARSRSV 275

Query: 258 FWLEINVQPGMTP 270
           F  E+N+  G++P
Sbjct: 276 FLNEVNM--GLSP 286


>gi|17231371|ref|NP_487919.1| cyanophycin synthetase [Nostoc sp. PCC 7120]
 gi|20137726|sp|P58572|CPHA_ANASP RecName: Full=Cyanophycin synthetase; AltName: Full=Cyanophycin
           synthase
 gi|17133013|dbj|BAB75578.1| cyanophycin synthetase [Nostoc sp. PCC 7120]
          Length = 901

 Score = 39.3 bits (90), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 5/66 (7%)

Query: 82  SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI----SPPYVIKPLKGGS 137
           +GIL   L+ DK  +K+++++ GVPV    ++N F  D +  I      P VIKPL G  
Sbjct: 209 TGILGVELACDKEATKRILAASGVPVPRGTVIN-FLDDLEEAIEYVGGYPIVIKPLDGNH 267

Query: 138 SLGIIV 143
             GI +
Sbjct: 268 GRGITI 273


>gi|332519486|ref|ZP_08395953.1| phosphoribosylamine/glycine ligase [Lacinutrix algicola 5H-3-7-4]
 gi|332045334|gb|EGI81527.1| phosphoribosylamine/glycine ligase [Lacinutrix algicola 5H-3-7-4]
          Length = 431

 Score = 39.3 bits (90), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 25/109 (22%), Positives = 52/109 (47%), Gaps = 8/109 (7%)

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH----LISPPYVIKPLKGGSSLGI 141
           A+ L   K  +K+ +    +P       N  T++  +     + PPYV+K     +  G+
Sbjct: 107 AAELEGSKEFAKEFLYKHNIPTAAYKSFNAETVEDGYAFLETLKPPYVLKADGLAAGKGV 166

Query: 142 IVIKKDQSIPLDL----LQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186
           ++++       +L    + +   N   +++IE+++DGIEL+C V+ D  
Sbjct: 167 VILEDINEAKTELKAMLVDAKFGNASTKVVIEEFLDGIELSCFVLTDGK 215


>gi|320591326|gb|EFX03765.1| d-alanine ligase [Grosmannia clavigera kw1407]
          Length = 367

 Score = 39.3 bits (90), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 57/195 (29%), Positives = 86/195 (44%), Gaps = 29/195 (14%)

Query: 129 VIKPLKGGSSLGIIVIKKDQSIP--LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186
           V KP +G  S G+ V      +   +  LQS + +    +LIEQ++ G E+T  VM  A 
Sbjct: 171 VGKPARGRGSYGVKVCHTADELQDHVRELQSETMH----VLIEQFLAGEEVTVTVMPPAV 226

Query: 187 LDVTEI-AVPKSDFYSYELKYS--------SLNSTHVLPA-KIPLDIYKEVQRLAFLAHQ 236
              T+  A+P    + +E   +        S NS  V  + K PL  Y+ + R      +
Sbjct: 227 AGKTDYWALPVVTRFDHEDGIAPSNGSVAVSTNSRAVSDSDKDPL--YRALMRECEAVAR 284

Query: 237 AIGCRGISRSDFL--FDPLSRKVFWLEINVQPGMT--------PVSIFPEMAAYA-GYSF 285
           A+G     R D     D  S K   L++N +P MT          +    +AA A G+ +
Sbjct: 285 ALGTTAPIRVDARRHRDAASSKFALLDVNTKPNMTGPGRPGRDDQACLTLLAAEALGWEY 344

Query: 286 RELLLWMVEDASCLR 300
           RELL  ++  AS LR
Sbjct: 345 RELLERILRTASVLR 359


>gi|256840245|ref|ZP_05545753.1| carbamoylphosphate synthase large subunit [Parabacteroides sp. D13]
 gi|256737517|gb|EEU50843.1| carbamoylphosphate synthase large subunit [Parabacteroides sp. D13]
          Length = 314

 Score = 39.3 bits (90), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 26/98 (26%), Positives = 48/98 (48%), Gaps = 8/98 (8%)

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL--ISPPYVIKPLKGGSSLGIIVIKK 146
           +S+DK++  + +++ G     S            L  IS P  +KP++G +SL I  +  
Sbjct: 115 MSLDKIQMYEWLTTHGYKTAKSYTDKSVFFKDIELGKISYPVFVKPVRGSASLAISKVND 174

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
            ++I L       + H D L+I++++DG E+   V  D
Sbjct: 175 KETIEL------LFAHADNLMIQEFLDGQEIGADVYID 206


>gi|51574082|gb|AAU07975.1| VanB [Enterococcus faecium]
          Length = 121

 Score = 39.3 bits (90), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 20/86 (23%), Positives = 43/86 (50%), Gaps = 2/86 (2%)

Query: 99  VVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS 158
           +  + G+ V    ++++        ++ P  +KP + GSS G+  +   +   L+    +
Sbjct: 3   LTKNAGIAVPEFQMIDKGDKPEAGALTYPVFVKPARSGSSFGLTKVNGTEE--LNAAIEA 60

Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGD 184
           +  +  ++LIEQ + G E+ C VMG+
Sbjct: 61  AGQYDGKILIEQAISGCEVGCAVMGN 86


>gi|218187207|gb|EEC69634.1| hypothetical protein OsI_39029 [Oryza sativa Indica Group]
          Length = 740

 Score = 39.3 bits (90), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 42/189 (22%), Positives = 82/189 (43%), Gaps = 25/189 (13%)

Query: 92  DKMRSKQVVSSCGVPVCPSILVNRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKD 147
           DK  SK ++ + GVP+ P        ++      + I  P +IKP  GG   G+ ++++ 
Sbjct: 152 DKSASKWIMGAAGVPLVPGYHGAEQDIELLKLEANKIGYPVLIKPTHGGGGKGMRIVQRP 211

Query: 148 QSIPLDLL---QSSSWNHG-DQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSY 202
           +     +L   + ++ + G + LL+E+Y+     +   + GD   +V  +         Y
Sbjct: 212 EDFVDSVLSAQREAAASFGINTLLVEKYITQPRHIEVQIFGDQHGNVIHL---------Y 262

Query: 203 ELKYSSLNSTHV-----LPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256
           E +  SL   H       PA  +       +   A  A +A+G       +F+ D LS +
Sbjct: 263 E-RDCSLQRRHQKIIEEAPAPNVTAQFRSHIGEAAVSAAKAVGYYSAGTVEFIVDTLSGE 321

Query: 257 VFWLEINVQ 265
            +++E+N +
Sbjct: 322 FYFMEMNTR 330


>gi|239941426|ref|ZP_04693363.1| putative acetyl/propionyl CoA carboxylase alpha subunit
           [Streptomyces roseosporus NRRL 15998]
 gi|239987891|ref|ZP_04708555.1| putative acetyl/propionyl CoA carboxylase alpha subunit
           [Streptomyces roseosporus NRRL 11379]
          Length = 652

 Score = 39.3 bits (90), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 49/96 (51%), Gaps = 8/96 (8%)

Query: 86  ASALSMDKMRSKQVVSSCGVPVCP----SILVNRFTMDSQHLISPPYVIKPLKGGSSLGI 141
           A AL  DK+R+K+ V++ GVPV P    S L +    ++   I  P ++KP  GG   G+
Sbjct: 112 AIALMGDKIRAKETVAAYGVPVVPGSSGSGLTDAQLEEAAREIGTPVLLKPSAGGGGKGM 171

Query: 142 IVIKKDQSIPLDLLQSSSWNHG----DQLLIEQYVD 173
            +++    +  ++  +          D LL+E+++D
Sbjct: 172 RLVRDAAVLGEEIAAARREARASFGDDTLLVERWID 207


>gi|50294352|ref|XP_449587.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49528901|emb|CAG62563.1| unnamed protein product [Candida glabrata]
          Length = 1834

 Score = 39.3 bits (90), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 41/184 (22%), Positives = 75/184 (40%), Gaps = 18/184 (9%)

Query: 93  KMRSKQVVSSCGVPVCP-SILVNR----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147
           K  +++V  S GVP+ P S LV      FT+     I  P ++K   GG  +G+  +  +
Sbjct: 744 KHSAREVAKSAGVPLVPGSPLVKNADEAFTIAKN--IGYPVMVKSTAGGGGIGLQKVDNE 801

Query: 148 QSIPLDLL----QSSSWNHGDQLLIEQYVDGIE-LTCGVMGDASLDVTEIAVPKSDFYSY 202
           Q +         Q SS+     + +E+++D    +   +MGD       +          
Sbjct: 802 QDMRKAFETVKHQGSSYFGDSGVFMEKFIDNARHVEVQIMGDGKGKTLALGERDCSLQRR 861

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRL-AFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
             K         LP +    +    +RL A+L +     RG    +F++D    + ++LE
Sbjct: 862 NQKVIEETPAPNLPRETRQKMLTAAERLGAYLNY-----RGAGTVEFIYDEQRDQFYFLE 916

Query: 262 INVQ 265
           +N +
Sbjct: 917 VNTR 920


>gi|325964659|ref|YP_004242565.1| phosphoribosylamine--glycine ligase [Arthrobacter
           phenanthrenivorans Sphe3]
 gi|323470746|gb|ADX74431.1| phosphoribosylamine--glycine ligase [Arthrobacter
           phenanthrenivorans Sphe3]
          Length = 444

 Score = 39.3 bits (90), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 60/242 (24%), Positives = 95/242 (39%), Gaps = 27/242 (11%)

Query: 77  IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL--ISPPYVIKPLK 134
           IP       A+ L   K  +K++++  GVP   +++       +  L     PYV+K   
Sbjct: 95  IPVFGPSKAAAQLEASKAFAKEIMAEAGVPTAMAMVATSAEEAASALDTFGAPYVVKDDG 154

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194
             +  G++V K D++  L   QS  ++ G  ++IE+++DG E++  V+ D    V     
Sbjct: 155 LAAGKGVVVTK-DRAEALAHAQSC-FDAGGSVVIEEFLDGPEVSLFVLCDGHNTVA--LS 210

Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE------VQRLAFLAHQAIGCRGISRSDF 248
           P  DF           +T  + A  PL+   E      + R+A      +  RG      
Sbjct: 211 PAQDFKRI-FDNDEGPNTGGMGAYTPLEWAPEGLVQEVIDRVAQPTVNEMARRGTPFVGV 269

Query: 249 LFDPL---SRKVFWLEINVQPG-----------MTPVSIFPEMAAYAGYSFRELLLWMVE 294
           LF  L   SR    +E NV+ G            TP+      AA       E L W  E
Sbjct: 270 LFVGLALTSRGTRVIEFNVRFGDPETQAVLARLKTPLGSLLMAAAKGELDKAEELRWAKE 329

Query: 295 DA 296
            A
Sbjct: 330 TA 331


>gi|159898544|ref|YP_001544791.1| phosphoribosylglycinamide synthetase [Herpetosiphon aurantiacus
           ATCC 23779]
 gi|159891583|gb|ABX04663.1| phosphoribosylglycinamide synthetase [Herpetosiphon aurantiacus
           ATCC 23779]
          Length = 407

 Score = 39.3 bits (90), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 39/174 (22%), Positives = 69/174 (39%), Gaps = 15/174 (8%)

Query: 60  GNFGE--DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117
           G F E    +   +   L++PY  S  +      D MR  QV+    +   P+I  +  T
Sbjct: 75  GGFNEVTQHIAADVAAALKLPYHSSATIHYTRQKDAMR--QVLREANLD--PTIAQSVET 130

Query: 118 MDSQHLISP----PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
            D   +       P V+KP  G +S+G+ +I+    I        +   G  +L+E+Y+ 
Sbjct: 131 ADDIKVFGERYGYPLVLKPRDGRASMGVSIIRSAAEIATAQAWFEAGAAGHAMLVEEYLS 190

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227
           G E +     +           K     ++   +S+ + H LPA +P     E+
Sbjct: 191 GEEYSVEAFSEYGQHHIICVTQK-----FKDPQTSVETGHCLPAPLPQATVAEI 239


>gi|167038198|ref|YP_001665776.1| phosphoribosylaminoimidazole carboxylase ATPase subunit
           [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|167039093|ref|YP_001662078.1| phosphoribosylaminoimidazole carboxylase ATPase subunit
           [Thermoanaerobacter sp. X514]
 gi|256750947|ref|ZP_05491831.1| phosphoribosylaminoimidazole carboxylase, ATPase subunit
           [Thermoanaerobacter ethanolicus CCSD1]
 gi|300913318|ref|ZP_07130635.1| phosphoribosylaminoimidazole carboxylase, ATPase subunit
           [Thermoanaerobacter sp. X561]
 gi|307723668|ref|YP_003903419.1| phosphoribosylaminoimidazole carboxylase, ATPase subunit
           [Thermoanaerobacter sp. X513]
 gi|320116608|ref|YP_004186767.1| phosphoribosylaminoimidazole carboxylase, ATPase subunit
           [Thermoanaerobacter brockii subsp. finnii Ako-1]
 gi|166853333|gb|ABY91742.1| phosphoribosylaminoimidazole carboxylase, ATPase subunit
           [Thermoanaerobacter sp. X514]
 gi|166857032|gb|ABY95440.1| phosphoribosylaminoimidazole carboxylase, ATPase subunit
           [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|256750282|gb|EEU63302.1| phosphoribosylaminoimidazole carboxylase, ATPase subunit
           [Thermoanaerobacter ethanolicus CCSD1]
 gi|300890003|gb|EFK85148.1| phosphoribosylaminoimidazole carboxylase, ATPase subunit
           [Thermoanaerobacter sp. X561]
 gi|307580729|gb|ADN54128.1| phosphoribosylaminoimidazole carboxylase, ATPase subunit
           [Thermoanaerobacter sp. X513]
 gi|319929699|gb|ADV80384.1| phosphoribosylaminoimidazole carboxylase, ATPase subunit
           [Thermoanaerobacter brockii subsp. finnii Ako-1]
          Length = 386

 Score = 39.3 bits (90), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 47/179 (26%), Positives = 81/179 (45%), Gaps = 19/179 (10%)

Query: 92  DKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
           DK++ KQV+    +PV     V  F +        P++ K  KGG     +V+ KD++  
Sbjct: 109 DKLKQKQVLKGANLPVPRFEKVENFEVSFFEKFGFPFIQKATKGGYDGRGVVVIKDKNDL 168

Query: 152 LDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLN 210
             +L+  S       LIE++VD G EL   V  +   ++    V +  F     + +++ 
Sbjct: 169 DKMLRVDS-------LIEEFVDMGKELAVMVARNLQGEIKCYPVVEMVFD----ESANIL 217

Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQA---IGCRGISRSDFLFDPLSRKVFWLEINVQP 266
              + PA+I  +I + V+ +A  A +A   IG  GI     +F    +K+   EI  +P
Sbjct: 218 DLLIAPARIEKEIEENVKEIAIKAVEALDGIGIFGIE----MFLTKDKKILINEIAPRP 272


>gi|293604151|ref|ZP_06686559.1| cyanophycin synthase [Achromobacter piechaudii ATCC 43553]
 gi|292817376|gb|EFF76449.1| cyanophycin synthase [Achromobacter piechaudii ATCC 43553]
          Length = 871

 Score = 38.9 bits (89), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 31/132 (23%), Positives = 58/132 (43%), Gaps = 3/132 (2%)

Query: 55  FNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
             +  GN  + G   A   +       +  +A  +S DK  +K+++S+CGVPV    LV 
Sbjct: 182 IRLFEGNLVQFGYGSAQRRIWTAETDRTSAIAEGISRDKDLTKELLSTCGVPVPEGRLVR 241

Query: 115 RF--TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                 ++   I  P V+KP  G    G+      +   +   + +  + G  +++E++V
Sbjct: 242 SEDDAWEAAEDIGLPVVVKPYDGNHGRGVFTNLTTREEVVSAYRVAV-DEGSGVIVERFV 300

Query: 173 DGIELTCGVMGD 184
            G E    V+G+
Sbjct: 301 LGNEHRLLVVGN 312


>gi|90408131|ref|ZP_01216300.1| acetyl-CoA carboxylase multifunctional enzyme accADC,
            carboxyltransferase subunit alpha/carboxyl transferase
            subunit [Psychromonas sp. CNPT3]
 gi|90310743|gb|EAS38859.1| acetyl-CoA carboxylase multifunctional enzyme accADC,
            carboxyltransferase subunit alpha/carboxyl transferase
            subunit [Psychromonas sp. CNPT3]
          Length = 1520

 Score = 38.9 bits (89), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 42/192 (21%), Positives = 86/192 (44%), Gaps = 16/192 (8%)

Query: 85   LASALSM-DKMRSKQVVSSCGVPVCPS---ILVN-RFTMDSQHLISPPYVIKPLKGGSSL 139
            + S L+M +K  + +     GVPV P    IL      +D  + I  P ++K + GG   
Sbjct: 1054 MDSMLTMGNKSNAIKTAQDHGVPVVPGSHGILTGAEQALDIANGIGYPVLLKAVNGGGGK 1113

Query: 140  GIIVIKKDQSIPLDLLQ-----SSSWNHGDQLLIEQYVDGIE-LTCGVMGDASLDVTEIA 193
            GI+VI+K + +     Q      S++ +GD L +E+Y+  +  +   ++ D   +   + 
Sbjct: 1114 GILVIEKAEDMFTGFAQVSAEARSAFGNGD-LYLEKYITSLRHIEVQLLRDKQGNTRVLG 1172

Query: 194  VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
            +          K    +++ +LP K+        + LA    +A+   G    +F++D  
Sbjct: 1173 IRDCSVQRNNQKVVEESASTMLPKKLEELAMTYTESLA----EAVDYMGAGTVEFIYDLD 1228

Query: 254  SRKVFWLEINVQ 265
               ++++E+N +
Sbjct: 1229 EDAIYFMEMNTR 1240


>gi|219870520|ref|YP_002474895.1| ribosomal protein S6 modification protein, glutamic acid ligase
           [Haemophilus parasuis SH0165]
 gi|219690724|gb|ACL31947.1| ribosomal protein S6 modification protein, glutamic acid ligase
           [Haemophilus parasuis SH0165]
          Length = 294

 Score = 38.9 bits (89), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 44/187 (23%), Positives = 86/187 (45%), Gaps = 17/187 (9%)

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP--PYVIKPLKGGSSLGIIV 143
           A AL+ DK +S Q +++CG+PV  ++L+      ++ L     P VIK L G   +G+++
Sbjct: 100 AFALARDKWQSLQRLAACGIPVPDTLLMGELYSVAEGLSQSGLPAVIKTLSGSQGVGVML 159

Query: 144 IKKDQSI--PLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYS 201
            +   S    L+ L+S+      Q  I +   G ++   V+G+  +   E      +F +
Sbjct: 160 AESYSSALSLLETLKSAKVPSLLQTFIAE-AKGQDIRAFVIGEQVVATMERTGASGEFRA 218

Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
              +  +  +  +  A+         Q++A  A +AIG   ++  D +     + +  LE
Sbjct: 219 NIHRGGTAQAIQLSDAE---------QKIAVQAAKAIGL-DVAGVDLIRS--QQGIMVLE 266

Query: 262 INVQPGM 268
           +N  PG+
Sbjct: 267 VNASPGL 273


>gi|194288896|ref|YP_002004803.1| cyanophycin synthetase [Cupriavidus taiwanensis LMG 19424]
 gi|193222731|emb|CAQ68734.1| Cyanophycin synthetase [Cupriavidus taiwanensis LMG 19424]
          Length = 877

 Score = 38.9 bits (89), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 27/103 (26%), Positives = 52/103 (50%), Gaps = 7/103 (6%)

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGII 142
           +A ++S DK  +K ++ SCGVPV    LV       D+   I  P V+KP  G    G+ 
Sbjct: 212 IAESISRDKDLTKSLLESCGVPVPEGRLVESPEDAWDAAEDIGVPVVVKPYDGNHGRGVF 271

Query: 143 --VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
             ++ +++   ++     + + G  +++E+++ G E    V+G
Sbjct: 272 TNLMTREE---VETAYGVAIDEGSGVIVERFIPGNEHRLLVVG 311


>gi|72163412|ref|YP_291069.1| phosphoribosylamine--glycine ligase [Thermobifida fusca YX]
 gi|71917144|gb|AAZ57046.1| phosphoribosylamine--glycine ligase [Thermobifida fusca YX]
          Length = 424

 Score = 38.9 bits (89), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 30/116 (25%), Positives = 58/116 (50%), Gaps = 10/116 (8%)

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIV 143
           A+ +   K  +K+V+++ GVP   + +    +  SQ   L  PPYV+K     +  G++V
Sbjct: 96  AARIEGSKAFAKEVMAAAGVPTAEARVCRSASQVSQALDLFGPPYVVKDDGLAAGKGVVV 155

Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDF 199
            + D+++     Q+       +++IE+Y+DG E++   + D    V  +  P  DF
Sbjct: 156 TE-DRAVAERHAQACG-----RVVIEEYLDGPEVSLFALSDGRNAVPLL--PAQDF 203


>gi|330998095|ref|ZP_08321923.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Paraprevotella
           xylaniphila YIT 11841]
 gi|329569184|gb|EGG50975.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Paraprevotella
           xylaniphila YIT 11841]
          Length = 503

 Score = 38.9 bits (89), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 45/188 (23%), Positives = 80/188 (42%), Gaps = 24/188 (12%)

Query: 92  DKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP----PYVIKPLKGGSSLGIIVIKKD 147
           DK+ ++Q + + GVPV P         D    I      P ++K   GG   G+ +I  +
Sbjct: 115 DKIAARQRMMAAGVPVVPGTAEPLKDADEAVRICKEIGFPVMLKASMGGGGKGMRLIHSE 174

Query: 148 QSIP--LDLLQSSSWNH--GDQLLIEQYVD---GIELTCGVMGDASLDVTEIAVPKSDFY 200
             +    D  +S S +    D + +E++V+    IE    ++GDA  +V  +       +
Sbjct: 175 DEVKEAYDSARSESMSSFGDDTVYLEKFVEEPHHIEFQ--ILGDAHGNVVHL-------F 225

Query: 201 SYELKYSSLNSTHVLPAKIPL---DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
             E      N   V  +  P    ++ +E+   A  A +A+  RG    +FL D   R  
Sbjct: 226 DRECSVQRRNQKIVEESPSPFLTPELRREMGEKAVAAARAVNYRGAGTIEFLVDKY-RHF 284

Query: 258 FWLEINVQ 265
           ++LE+N +
Sbjct: 285 YFLEMNTR 292


>gi|120435282|ref|YP_860968.1| hypothetical protein GFO_0927 [Gramella forsetii KT0803]
 gi|117577432|emb|CAL65901.1| conserved hypothetical protein [Gramella forsetii KT0803]
          Length = 358

 Score = 38.9 bits (89), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 24/94 (25%), Positives = 49/94 (52%), Gaps = 4/94 (4%)

Query: 92  DKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL-ISPPYVIKPLKGGSSLGIIVIKKDQSI 150
           DK R+ Q++    +P+  + + ++  + +     + P V KP++G  S G+ V +  + +
Sbjct: 119 DKWRTNQLLKEQKLPIPRAKIFSKKNLKNNSFDFTFPIVTKPIRGRGSQGVHVAQNQKEL 178

Query: 151 PLDLLQS--SSWNHGDQLLIEQYVDGIELTCGVM 182
              L+     S  +G ++ IE+Y+ G E+T  VM
Sbjct: 179 -FQLINELIDSDKYGKEVYIEEYLSGQEITITVM 211


>gi|315043352|ref|XP_003171052.1| hypothetical protein MGYG_07050 [Arthroderma gypseum CBS 118893]
 gi|311344841|gb|EFR04044.1| hypothetical protein MGYG_07050 [Arthroderma gypseum CBS 118893]
          Length = 671

 Score = 38.9 bits (89), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 32/122 (26%), Positives = 59/122 (48%), Gaps = 10/122 (8%)

Query: 116 FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175
           F + S+H ++ P ++KP  G SS G+  +   +++ L +       HG + +IE Y  G 
Sbjct: 353 FGIASKHDLTYPLIVKPCDGWSSEGVSRVDSPEALALAIKSIDVSRHGTEFVIEPYCSGP 412

Query: 176 ELTCG-VMGDASLDVTEIA--VPKS-DFYSYELK----YSSLNSTHVLPAKIPLDIYKEV 227
           E     ++ D  +  +EI   +PKS D  S   +    +  LN+  V P+ +P     E+
Sbjct: 413 EFDANFILLDGEVLFSEICDDLPKSADINSSSERMITNFHELNT--VYPSALPSHEKNEI 470

Query: 228 QR 229
           ++
Sbjct: 471 RQ 472


>gi|295666554|ref|XP_002793827.1| methylcrotonoyl-CoA carboxylase subunit alpha [Paracoccidioides
           brasiliensis Pb01]
 gi|226277480|gb|EEH33046.1| methylcrotonoyl-CoA carboxylase subunit alpha [Paracoccidioides
           brasiliensis Pb01]
          Length = 726

 Score = 38.9 bits (89), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 42/183 (22%), Positives = 77/183 (42%), Gaps = 13/183 (7%)

Query: 92  DKMRSKQVVSSCGVPVCPSILVNRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKD 147
           DK RSK+++++ GVP  P        MD        I  P +IK +KGG   G+ +    
Sbjct: 155 DKSRSKEIMTTAGVPCVPGYHGENQDMDFLEAEAERIKFPVLIKAVKGGGGKGMRIASSK 214

Query: 148 QSIPLDLL--QSSSWNH--GDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSY 202
           ++    L+  +S + N    D +L+E+Y+     +   V  D   +   +          
Sbjct: 215 ETFRDQLISAKSEAMNSFGNDTMLVEKYITTPRHIEVQVFADKHGNCVALGERDCSIQRR 274

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
             K    +    LP     D++ + +  A     A+G  G    +F+FD  + + F++E+
Sbjct: 275 HQKILEESPAPHLPEATRKDLWDKARAAAL----AVGYEGAGTVEFIFDNDTGEFFFMEM 330

Query: 263 NVQ 265
           N +
Sbjct: 331 NTR 333


>gi|169350047|ref|ZP_02866985.1| hypothetical protein CLOSPI_00787 [Clostridium spiroforme DSM 1552]
 gi|169293260|gb|EDS75393.1| hypothetical protein CLOSPI_00787 [Clostridium spiroforme DSM 1552]
          Length = 413

 Score = 38.9 bits (89), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 41/196 (20%), Positives = 86/196 (43%), Gaps = 24/196 (12%)

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRF--TMDSQHLISPPYVIKPLKGGSSLG 140
           G   S L  DK+  ++      +   P  LV+     ++    +  P +IKP    +S G
Sbjct: 98  GYNISCLFTDKVLMRKKCKELDLNPIPYALVHNLYDAIEFYDTLGAPAIIKPADSQASKG 157

Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC-GVMGDASLDVTEIA----VP 195
           +  I   Q + +   ++  ++   +++IE++++G EL    ++ D  + V  I       
Sbjct: 158 VHKITCRQDMIMYFKEAMDYSRNGKVIIEKFINGFELLVDSLIVDGEIKVLTIGEYAPFA 217

Query: 196 KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRS----DFLFD 251
           K D +S        +   + P+K P D+    ++++   +Q I   G++ S    ++L+D
Sbjct: 218 KKDVFS--------SHKTIFPSKCPKDVK---EKVSTFNNQIIKKFGLNNSRTHAEYLYD 266

Query: 252 PLSRKVFWLEINVQPG 267
               K + +EI  + G
Sbjct: 267 --GEKCYLVEIAARGG 280


>gi|297843108|ref|XP_002889435.1| 3-methylcrotonyl-CoA carboxylase 1 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297335277|gb|EFH65694.1| 3-methylcrotonyl-CoA carboxylase 1 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 734

 Score = 38.9 bits (89), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 40/188 (21%), Positives = 79/188 (42%), Gaps = 23/188 (12%)

Query: 92  DKMRSKQVVSSCGVPVCPSILVNRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKD 147
           DK  SK+++ + GVP+ P    +   +D        I  P +IKP  GG   G+ +++ +
Sbjct: 151 DKSASKRIMGAAGVPLVPGYHGHEQDIDHMKSEAEKIGYPIIIKPTHGGGGKGMRIVQSE 210

Query: 148 QSIPLDLL---QSSSWNHG-DQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSY 202
           +      L   + ++ + G + +L+E+Y+     +   + GD   +V          + Y
Sbjct: 211 KDFADSFLGAQREAAASFGVNTILLEKYITRPRHIEVQIFGDKHGNV---------LHLY 261

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQR-----LAFLAHQAIGCRGISRSDFLFDPLSRKV 257
           E   S       +  + P     E  R      A  A +A+G       +F+ D  S + 
Sbjct: 262 ERDCSVQRRHQKIIEEAPAPNISEKFRANLGQAAVSAARAVGYYNAGTVEFIVDTESDQF 321

Query: 258 FWLEINVQ 265
           +++E+N +
Sbjct: 322 YFMEMNTR 329


>gi|154285674|ref|XP_001543632.1| hypothetical protein HCAG_00678 [Ajellomyces capsulatus NAm1]
 gi|150407273|gb|EDN02814.1| hypothetical protein HCAG_00678 [Ajellomyces capsulatus NAm1]
          Length = 722

 Score = 38.9 bits (89), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 41/183 (22%), Positives = 77/183 (42%), Gaps = 13/183 (7%)

Query: 92  DKMRSKQVVSSCGVPVCPSILVNRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKD 147
           DK RSK+++++ GVP  P    +  +M+        I  P +IK +KGG   G+ +    
Sbjct: 154 DKSRSKEIMTAAGVPCVPGYHGDNQSMEFLEAEAEKIKFPVLIKAVKGGGGKGMRIASSK 213

Query: 148 QSIPLDLLQSSSWNHG----DQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSY 202
           ++    L+ + S        D +L+E+Y+     +   V  D   +   +          
Sbjct: 214 ETFRDQLISAKSEAMNSFGDDTMLVEKYITTPRHIEVQVFADKHGNCVALGERDCSIQRR 273

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
             K    +    LP     DI+ + +  A     A+G  G    +F+FD  + + F++E+
Sbjct: 274 HQKILEESPAPHLPEATRKDIWDKARAAAL----AVGYEGAGTVEFIFDNDTGEFFFMEM 329

Query: 263 NVQ 265
           N +
Sbjct: 330 NTR 332


>gi|291444869|ref|ZP_06584259.1| acetyl/propionyl CoA carboxylase alpha subunit [Streptomyces
           roseosporus NRRL 15998]
 gi|291347816|gb|EFE74720.1| acetyl/propionyl CoA carboxylase alpha subunit [Streptomyces
           roseosporus NRRL 15998]
          Length = 674

 Score = 38.9 bits (89), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 49/96 (51%), Gaps = 8/96 (8%)

Query: 86  ASALSMDKMRSKQVVSSCGVPVCP----SILVNRFTMDSQHLISPPYVIKPLKGGSSLGI 141
           A AL  DK+R+K+ V++ GVPV P    S L +    ++   I  P ++KP  GG   G+
Sbjct: 134 AIALMGDKIRAKETVAAYGVPVVPGSSGSGLTDAQLEEAAREIGTPVLLKPSAGGGGKGM 193

Query: 142 IVIKKDQSIPLDLLQSSSWNHG----DQLLIEQYVD 173
            +++    +  ++  +          D LL+E+++D
Sbjct: 194 RLVRDAAVLGEEIAAARREARASFGDDTLLVERWID 229


>gi|309791144|ref|ZP_07685677.1| carbamoyl-phosphate synthase L chain ATP-binding [Oscillochloris
           trichoides DG6]
 gi|308226842|gb|EFO80537.1| carbamoyl-phosphate synthase L chain ATP-binding [Oscillochloris
           trichoides DG6]
          Length = 509

 Score = 38.9 bits (89), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 43/188 (22%), Positives = 78/188 (41%), Gaps = 23/188 (12%)

Query: 92  DKMRSKQVVSSCGVPVCPSILVNRFTMDSQ-------HLISPPYVIKPLKGGSSLGIIVI 144
           DK+R+K++     VP  P I     T   Q         ++ P +IK   GG   G++ I
Sbjct: 143 DKIRAKEIAKQSNVPTVPGI--ENVTSAEQIIEWMQKERVAFPIMIKAAAGGGGKGMVKI 200

Query: 145 KKDQSIPLDLLQSSSWNHG----DQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDF 199
                I   L Q+ S        D +L+E+Y++ G  +   ++ D    V  +       
Sbjct: 201 DSTDQIAAGLAQARSEAKKSFKDDTVLVEKYIEHGRHIEVQIVADEYQHVVHL------- 253

Query: 200 YSYELKYSSLNSTHV--LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
           Y  E      N   +   P+ +  D+ +E+   A    + IG       +F+F+P ++  
Sbjct: 254 YDRECTLQRRNQKIIEEAPSTLESDLRQEICVTAARLMRRIGYTSAGTVEFIFEPSTQSF 313

Query: 258 FWLEINVQ 265
           ++LE+N +
Sbjct: 314 YFLEVNTR 321


>gi|116671948|ref|YP_832881.1| phosphoribosylamine--glycine ligase [Arthrobacter sp. FB24]
 gi|116612057|gb|ABK04781.1| phosphoribosylamine--glycine ligase [Arthrobacter sp. FB24]
          Length = 446

 Score = 38.9 bits (89), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 50/203 (24%), Positives = 84/203 (41%), Gaps = 18/203 (8%)

Query: 77  IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLK 134
           IP       A+ L   K  +KQV++  GVP   + + +      D+      PYV+K   
Sbjct: 95  IPVFGPSKAAAQLEASKAFAKQVMAEAGVPTAMARVASTAEEAADALDTFGAPYVVKDDG 154

Query: 135 GGSSLGIIVIK-KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
             +  G++V   +D+++       S ++ G  ++IE+++DG E++  V+ D    V    
Sbjct: 155 LAAGKGVVVTNNRDEAL---AHAQSCFDAGGSVVIEEFLDGPEVSVFVLCDGRNTVA--L 209

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE------VQRLAFLAHQAIGCRGISRSD 247
            P  DF           +T  + A  PL+   E      + R+A      +  RG     
Sbjct: 210 SPAQDFKRI-FDNDEGPNTGGMGAYTPLEWAPEGLVQEVIDRVAQPTVNEMAHRGTPFVG 268

Query: 248 FLFDPL---SRKVFWLEINVQPG 267
            LF  L   SR    +E NV+ G
Sbjct: 269 VLFVGLALTSRGTRVIEFNVRFG 291


>gi|221632246|ref|YP_002521467.1| carbamoyl-phosphate synthase large subunit [Thermomicrobium roseum
           DSM 5159]
 gi|254813666|sp|B9KXM5|CARB_THERP RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|221156776|gb|ACM05903.1| carbamoyl-phosphate synthase, large subunit [Thermomicrobium roseum
           DSM 5159]
          Length = 1078

 Score = 38.9 bits (89), Expect = 0.99,   Method: Composition-based stats.
 Identities = 46/186 (24%), Positives = 83/186 (44%), Gaps = 13/186 (6%)

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRF--TMDSQHLISPPYVIKP--LKGGSSLGIIVI 144
           L+ D+ R ++ +   G+P  P   V      +++   I  P +++P  + GG ++   V+
Sbjct: 669 LAEDRRRFERFLHELGIPQPPGAGVTTLEEALETAERIGYPVLVRPSYVLGGRAME--VV 726

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYEL 204
            + + +   L  S ++  G  +LI++Y+DGIEL      DA  D  E+ VP    +    
Sbjct: 727 YRREHLEQYLATSGAFASGRPVLIDKYLDGIELEV----DALCDGHEVLVPGIMQHIERA 782

Query: 205 KYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
              S +S  V PA ++P      + R       A+  RG+    F+       V+ LE+N
Sbjct: 783 GVHSGDSFAVYPAVELPSVHVDTLVRYTTEIALALAARGLINIQFVLH--QGVVYVLEVN 840

Query: 264 VQPGMT 269
            +   T
Sbjct: 841 PRASRT 846


>gi|76881227|gb|ABA56282.1| cyanophycin synthetase [Nostoc ellipsosporum]
 gi|157092715|gb|ABV22527.1| cyanophycin synthetase [synthetic construct]
 gi|157092741|gb|ABV22544.1| cyanophycin synthetase [Nostoc ellipsosporum NE1]
          Length = 901

 Score = 38.9 bits (89), Expect = 0.99,   Method: Composition-based stats.
 Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 5/66 (7%)

Query: 82  SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGS 137
           +GIL   L+ DK  +K+++++ GVPV    ++N F  D +  I      P VIKPL G  
Sbjct: 209 TGILGVELACDKEATKRILAASGVPVPRGTVIN-FLDDLEEAIEYVGGYPIVIKPLDGNH 267

Query: 138 SLGIIV 143
             GI +
Sbjct: 268 GRGITI 273


>gi|89068690|ref|ZP_01156076.1| acetyl-CoA carboxylase [Oceanicola granulosus HTCC2516]
 gi|89045653|gb|EAR51715.1| acetyl-CoA carboxylase [Oceanicola granulosus HTCC2516]
          Length = 452

 Score = 38.9 bits (89), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 43/188 (22%), Positives = 83/188 (44%), Gaps = 24/188 (12%)

Query: 92  DKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP----PYVIKPLKGGSSLGIIVIKKD 147
           DK R+++   + GVPV P       ++++   I+     P +IK   GG   GI VI+ +
Sbjct: 118 DKARARETAIAAGVPVTPGSDGRIESVEAAARIAGELGYPVMIKAAAGGGGRGIRVIESE 177

Query: 148 QSIPLDLLQSSSWNH---GDQ-LLIEQYVDGIE-LTCGVMGDASLDVTEIAVPKSDFYSY 202
             +   +  + S      GD  L +E++VD    +   ++GD    V          +++
Sbjct: 178 ADLAKQMPAAQSEAEAAFGDGGLYMERFVDKARHVEVQILGDGDRAV----------HAW 227

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH-----QAIGCRGISRSDFLFDPLSRKV 257
           E + S       +  + P     + +R A  A      +++G RG    ++LFD   R+ 
Sbjct: 228 ERECSLQRRRQKVWEEAPAACLSQEEREALCASAVRLAESVGYRGAGTLEYLFDEARREF 287

Query: 258 FWLEINVQ 265
           +++E+N +
Sbjct: 288 YFIEMNTR 295


>gi|84501841|ref|ZP_00999999.1| acetyl/propionyl CoA carboxylase alpha subunit [Oceanicola
           batsensis HTCC2597]
 gi|84389836|gb|EAQ02470.1| acetyl/propionyl CoA carboxylase alpha subunit [Oceanicola
           batsensis HTCC2597]
          Length = 673

 Score = 38.9 bits (89), Expect = 1.00,   Method: Compositional matrix adjust.
 Identities = 42/189 (22%), Positives = 74/189 (39%), Gaps = 15/189 (7%)

Query: 88  ALSM--DKMRSKQVVSSCGVPVCPSIL----VNRFTMDSQHLISPPYVIKPLKGGSSLGI 141
           A+SM   K+ +K    + GVPV P        +   ++    +  P+++K   GG   G+
Sbjct: 114 AISMMGSKIEAKAAAEAAGVPVLPGYRGEDQSDARLLEEVEALGSPFLVKASAGGGGRGM 173

Query: 142 IVIKKDQSIPLDLLQSSSWNHG----DQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPK 196
            ++      P  +  + +   G      + +E+Y      +   V+GD    V  +    
Sbjct: 174 RLVTDLGEAPEAIASARAEAQGAFGDPAVFLERYAPRARHVEVQVLGDTHGTVLHLGDRD 233

Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256
                   K         LP  +  D+     RLA    QAIG R     ++L+DP   +
Sbjct: 234 CSLQRNHQKLIEEAPAADLPEAVRDDMRAAAVRLA----QAIGYRSAGTVEYLYDPARGE 289

Query: 257 VFWLEINVQ 265
            F+LE+N +
Sbjct: 290 YFFLEMNTR 298


>gi|317047518|ref|YP_004115166.1| alpha-L-glutamate ligase, RimK family [Pantoea sp. At-9b]
 gi|316949135|gb|ADU68610.1| alpha-L-glutamate ligase, RimK family [Pantoea sp. At-9b]
          Length = 300

 Score = 38.9 bits (89), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 42/191 (21%), Positives = 85/191 (44%), Gaps = 22/191 (11%)

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSLG 140
           +A   + DK+RS Q+++  G+ + P         D+  LI+     P V+K ++G   +G
Sbjct: 92  VAITRARDKLRSLQLLAREGIDM-PVTGFASSPDDTDDLITMVGGAPLVVKLVEGTQGIG 150

Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV---DGIELTCGVMGDASLDVTEIAVPKS 197
           +++ +  Q+    +      N    +L+++++    G ++ C V+GD  +   E A  + 
Sbjct: 151 VVLAETRQAAESVIDAFRGLNA--HILVQEFIKEAQGRDIRCLVIGDEVVAAIERAAKEG 208

Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
           DF S         + H      P+ I  + + +A  A   +G   ++  D L    +R  
Sbjct: 209 DFRS---------NLHRGGKAYPVRITDQEREIAVKAASTLGLE-VAGVDILR--ANRGP 256

Query: 258 FWLEINVQPGM 268
             +E+N  PG+
Sbjct: 257 LVMEVNASPGL 267


>gi|182438551|ref|YP_001826270.1| putative acetyl/propionyl CoA carboxylase alpha subunit
           [Streptomyces griseus subsp. griseus NBRC 13350]
 gi|178467067|dbj|BAG21587.1| putative acetyl/propionyl CoA carboxylase alpha subunit
           [Streptomyces griseus subsp. griseus NBRC 13350]
          Length = 652

 Score = 38.9 bits (89), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 53/101 (52%), Gaps = 10/101 (9%)

Query: 83  GILASALSM--DKMRSKQVVSSCGVPVCP----SILVNRFTMDSQHLISPPYVIKPLKGG 136
           G  A+A+S+  DK+R+K+ V++ GVPV P    S L +    ++   I  P ++KP  GG
Sbjct: 111 GPPAAAISLMGDKIRAKETVAAYGVPVVPGSSGSGLTDAQLEEAAREIGTPVLLKPSAGG 170

Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHG----DQLLIEQYVD 173
              G+ +++    +  ++  +          D LL+E+++D
Sbjct: 171 GGKGMRLVRDAAVLGEEIAAARREARASFGDDTLLVERWID 211


>gi|119478298|ref|ZP_01618329.1| Biotin/lipoyl attachment:Carbamoyl-phosphate synthase L chain,
           ATP-binding:Carbamoyl-phosphate synthetase large chain
           [marine gamma proteobacterium HTCC2143]
 gi|119448638|gb|EAW29883.1| Biotin/lipoyl attachment:Carbamoyl-phosphate synthase L chain,
           ATP-binding:Carbamoyl-phosphate synthetase large chain
           [marine gamma proteobacterium HTCC2143]
          Length = 674

 Score = 38.9 bits (89), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 56/276 (20%), Positives = 111/276 (40%), Gaps = 32/276 (11%)

Query: 14  VSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQA 70
           V L+    C  A E +    S +++DR     +     +L  + +H  +G   E+  +  
Sbjct: 63  VQLADEAVCLGAPEASD---SYLNIDR-----IIRSAKELGVDAIHPGYGFLAENAAMAD 114

Query: 71  ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP---- 126
             E  +I +     L+      K  ++Q+V S  +P  P +  NR    S   ++     
Sbjct: 115 ACERNDIVFIGPTALSMKAVASKQHARQLVDSLSLPTIPGL--NRLVSYSDEFVAQCEAI 172

Query: 127 --PYVIKPLKGGSSLGIIVIKKD---QSIPLDLLQSSSWNHGDQ-LLIEQYV-DGIELTC 179
             P ++K   GG  +G+ +++     Q+    + + S    GD  +++E+Y+ +   L  
Sbjct: 173 GFPVLLKATAGGGGVGMRIVEHGDDLQAAFEAVSRESQQAFGDGGIIVEKYLANARHLEV 232

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
            V+ D       +            K    +   +LPA I   +      +A    + I 
Sbjct: 233 QVLADHYGHCVHLHERDCSIQRRRQKIVEESPARLLPAGIKQSLCDTAVAIA----KHIN 288

Query: 240 CRGISRSDFLFDPLSRKVFWLEIN----VQPGMTPV 271
            RG    +FL+ P  ++ ++LE+N    V+ G+T +
Sbjct: 289 YRGAGTVEFLYSPEHQQFYFLEMNTRLQVEHGVTEL 324


>gi|89900109|ref|YP_522580.1| cyanophycin synthetase [Rhodoferax ferrireducens T118]
 gi|89344846|gb|ABD69049.1| Cyanophycin synthetase [Rhodoferax ferrireducens T118]
          Length = 722

 Score = 38.9 bits (89), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 27/101 (26%), Positives = 48/101 (47%), Gaps = 2/101 (1%)

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGII 142
           +A  ++ DK  +K ++ SCGVPV    +VN  +   ++   I  P  +KP  G    G+ 
Sbjct: 212 IAEEIASDKDLTKSLLQSCGVPVPQGQVVNSAQEAWEAAQDIGLPVALKPYDGNHGRGVS 271

Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           +  K+Q         +    G  +++EQ++ G E    V+G
Sbjct: 272 LDLKNQKDIEAAFLLAQRKGGGSVIVEQFIAGNEHRLLVVG 312


>gi|75908035|ref|YP_322331.1| cyanophycin synthetase [Anabaena variabilis ATCC 29413]
 gi|8134380|sp|O86109|CPHA_ANAVT RecName: Full=Cyanophycin synthetase; AltName: Full=Cyanophycin
           synthase
 gi|3393028|emb|CAA06440.1| cyanophycin synthetase [Anabaena variabilis ATCC 29413]
 gi|75701760|gb|ABA21436.1| Cyanophycin synthetase [Anabaena variabilis ATCC 29413]
          Length = 901

 Score = 38.9 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 5/66 (7%)

Query: 82  SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGS 137
           +GIL   L+ DK  +K+++++ GVPV    ++N F  D +  I      P VIKPL G  
Sbjct: 209 TGILGVELACDKEATKRILAASGVPVPRGTVIN-FLDDLEEAIEYVGGYPIVIKPLDGNH 267

Query: 138 SLGIIV 143
             GI +
Sbjct: 268 GRGITI 273


>gi|298490446|ref|YP_003720623.1| cyanophycin synthetase ['Nostoc azollae' 0708]
 gi|298232364|gb|ADI63500.1| cyanophycin synthetase ['Nostoc azollae' 0708]
          Length = 900

 Score = 38.5 bits (88), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 5/67 (7%)

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGG 136
           ++GIL   L+ DK  +K+++++ GVPV    ++N F  D +  I      P VIKPL G 
Sbjct: 208 NTGILGVELACDKEATKRILAANGVPVPRGTVIN-FLDDLEESIEYVGGYPIVIKPLDGN 266

Query: 137 SSLGIIV 143
              GI +
Sbjct: 267 HGRGITI 273


>gi|42057|emb|CAA36869.1| ddl protein (partial) (AA 1-41) [Escherichia coli]
          Length = 41

 Score = 38.5 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 18/37 (48%), Positives = 25/37 (67%)

Query: 1  MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID 37
          +AVL+GG S+EREVSL+SG A  + L + G     +D
Sbjct: 5  IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVD 41


>gi|116669947|ref|YP_830880.1| carbamoyl-phosphate synthase L chain, ATP-binding [Arthrobacter sp.
           FB24]
 gi|116610056|gb|ABK02780.1| Carbamoyl-phosphate synthase L chain, ATP-binding protein
           [Arthrobacter sp. FB24]
          Length = 752

 Score = 38.5 bits (88), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 29/109 (26%), Positives = 52/109 (47%), Gaps = 8/109 (7%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI----LVNRFTMDSQHLISPP 127
           LE   I +   G+ +  +  DK+RSK  V+  GVPV P I    + +   +++   +  P
Sbjct: 119 LEKAGITFIGPGVESLNVMGDKIRSKNHVAGYGVPVVPGIAEPGMTDAQLIEAAAGVGFP 178

Query: 128 YVIKPLKGGSSLGIIVIKKDQSIPLDLLQ----SSSWNHGDQLLIEQYV 172
            +IKP  GG   G+ ++++   +   L      ++S    D L +E+ V
Sbjct: 179 LLIKPSAGGGGKGMHIVERPDELEATLATARRVAASAFGDDTLFLERLV 227


>gi|258577213|ref|XP_002542788.1| predicted protein [Uncinocarpus reesii 1704]
 gi|237903054|gb|EEP77455.1| predicted protein [Uncinocarpus reesii 1704]
          Length = 666

 Score = 38.5 bits (88), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 31/113 (27%), Positives = 56/113 (49%), Gaps = 7/113 (6%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +H +  P +IKP  G  S G+   +    +   +    +  HG++ +IE+Y +G E+   
Sbjct: 360 EHNLEFPLIIKPTNGFLSEGVFRAENLSQLKTGVQAIHTDRHGNEFVIEKYCEGPEVDAN 419

Query: 181 -VMGDASLDVTEIA--VPKS-DFYSYELKYSSLNSTHVLPAKIP---LDIYKE 226
            V+ D  L + E++   PKS D        + +   +VLP+K+P   LD+ K+
Sbjct: 420 LVLCDGELILFEVSDDFPKSADANGRGNAKTFIELANVLPSKLPKSELDMLKD 472


>gi|241667649|ref|ZP_04755227.1| phosphoribosylglycinamide formyltransferase 2 [Francisella
           philomiragia subsp. philomiragia ATCC 25015]
 gi|254876194|ref|ZP_05248904.1| phosphoribosylglycinamide formyltransferase [Francisella
           philomiragia subsp. philomiragia ATCC 25015]
 gi|254842215|gb|EET20629.1| phosphoribosylglycinamide formyltransferase [Francisella
           philomiragia subsp. philomiragia ATCC 25015]
          Length = 385

 Score = 38.5 bits (88), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 24/93 (25%), Positives = 47/93 (50%), Gaps = 5/93 (5%)

Query: 86  ASALSMDKMRSKQVVSS-CGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGII 142
           A+ L+MD+   + + ++  G+        N  +  +D+  +I  P+VIKP+   S  G  
Sbjct: 100 ATKLTMDRQGIRSLAANELGLATSKFAFANNQKEYLDAVEIIGLPFVIKPVMSSSGKGQS 159

Query: 143 VIKKDQSI--PLDLLQSSSWNHGDQLLIEQYVD 173
           ++K+   +    D  QS S  H   +++EQ++D
Sbjct: 160 IVKERSEVQKAWDYAQSGSRGHAKGVIVEQFID 192


>gi|282896417|ref|ZP_06304438.1| Cyanophycin synthetase [Raphidiopsis brookii D9]
 gi|281198705|gb|EFA73585.1| Cyanophycin synthetase [Raphidiopsis brookii D9]
          Length = 860

 Score = 38.5 bits (88), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 5/67 (7%)

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI----SPPYVIKPLKGG 136
           ++GIL   L+ DK  +K+++++ GVPV    ++N F  D +  I      P VIKPL G 
Sbjct: 184 NTGILGVELACDKEATKRILANSGVPVPKGTVIN-FLDDLEGSIEYVGGYPIVIKPLDGN 242

Query: 137 SSLGIIV 143
              GI +
Sbjct: 243 HGRGITI 249


>gi|221128621|ref|XP_002166024.1| PREDICTED: similar to propionyl-Coenzyme A carboxylase, alpha
           polypeptide [Hydra magnipapillata]
          Length = 1281

 Score = 38.5 bits (88), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 41/184 (22%), Positives = 76/184 (41%), Gaps = 18/184 (9%)

Query: 93  KMRSKQVVSSCGVPVCPSILVNRF--TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150
           K  SK +  SCGVP+    +V      +    +I  P ++K   GG  +G+   +    +
Sbjct: 189 KHISKNIARSCGVPIADYAIVESVESCLKESEIIGYPVILKLSSGGGGIGMYRCENKSDV 248

Query: 151 ----PLDLLQSSSWNHGDQLLIEQYVDGI-ELTCGVMGDASLDVTEIAVPKSDFYSYELK 205
               PL  L++ S   G ++LIE+++     +   ++GD +  V  +A         E  
Sbjct: 249 LKYFPLVELKTKSVFKGSKILIEKFLSNCHHIEIQIIGDGNGHVISLA-------ERECS 301

Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRL---AFLAHQAIGCRGISRSDFLFDPLS-RKVFWLE 261
               N   +  A  P    +  Q++   A    Q +  R +   +F+ D     + F+LE
Sbjct: 302 IQRRNQKLIEEAPSPFLSQETRQKMCSDAIKLAQFVSYRSVGTVEFVVDDSKPNEYFFLE 361

Query: 262 INVQ 265
           +N +
Sbjct: 362 VNTR 365


>gi|170079083|ref|YP_001735721.1| carbamoyl phosphate synthase large subunit [Synechococcus sp. PCC
           7002]
 gi|169886752|gb|ACB00466.1| carbamoyl-phosphate synthase, large subunit [Synechococcus sp. PCC
           7002]
          Length = 1090

 Score = 38.5 bits (88), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 70/285 (24%), Positives = 122/285 (42%), Gaps = 50/285 (17%)

Query: 18  SGKACASALEDAGFKVSQID------------VDRS---------VGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++             DR+         V  V+   +PD    
Sbjct: 29  SGTQSCKALREEGYEVVLVNSNPATIMTDPETADRTYVEPITPEIVAKVIEKERPDALLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  V       LE   +    + + A  ++ D+   K+ ++  GVPVCPS +
Sbjct: 89  TMGGQTALNTAVSLAKNGTLEKFNVELIGAKLEAIEMAEDRNLFKEAMARIGVPVCPSGI 148

Query: 113 VNRFTMDSQHLI-----SPPYVIKP--LKGGSSLGIIVIKKD-QSIPLDLLQSSSWNHGD 164
            +  TM+    +     S P +I+P    GGS  GI   +++ + I    L++S  +   
Sbjct: 149 AS--TMEEAREVAIEIGSYPLIIRPAFTMGGSGGGIAYNQEEYEKICKSGLEASPVS--- 203

Query: 165 QLLIEQYVDG-IELTCGVMGDASLDVTEI-AVPKSDFYSYELKYSSLNSTHVLPAKIPLD 222
           Q+L+E+ + G  E    VM D + +V  I ++   D     +   + +S  V PA+   D
Sbjct: 204 QILVEKSLLGWKEYELEVMRDLADNVVIICSIENID----PMGVHTGDSITVAPAQTLTD 259

Query: 223 IYKEVQRLAFLAHQAIGCRGI----SRSDFLFDPLSRKVFWLEIN 263
             KE QRL   + + I   G+    S   F  +PL+ +V  +E+N
Sbjct: 260 --KEYQRLRDYSLKIIREIGVETGGSNIQFSVNPLNGEVIVIEMN 302


>gi|332880327|ref|ZP_08448005.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Capnocytophaga
           sp. oral taxon 329 str. F0087]
 gi|332681772|gb|EGJ54691.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Capnocytophaga
           sp. oral taxon 329 str. F0087]
          Length = 503

 Score = 38.5 bits (88), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 45/188 (23%), Positives = 80/188 (42%), Gaps = 24/188 (12%)

Query: 92  DKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP----PYVIKPLKGGSSLGIIVIKKD 147
           DK+ ++Q + + GVPV P         D    I      P ++K   GG   G+ +I  +
Sbjct: 115 DKIAARQRMMAAGVPVVPGTAEPLKDADEALRICKEIGFPVMLKASMGGGGKGMRLIHSE 174

Query: 148 QSIP--LDLLQSSSWNH--GDQLLIEQYVD---GIELTCGVMGDASLDVTEIAVPKSDFY 200
             +    D  +S S +    D + +E++V+    IE    ++GDA  +V  +       +
Sbjct: 175 DEVKEAYDSARSESMSSFGDDTVYLEKFVEEPHHIEFQ--ILGDAYGNVVHL-------F 225

Query: 201 SYELKYSSLNSTHVLPAKIPL---DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
             E      N   V  +  P    ++ +E+   A  A +A+  RG    +FL D   R  
Sbjct: 226 DRECSVQRRNQKIVEESPSPFLTPELRREMGEKAVAAARAVNYRGAGTIEFLVDKY-RHF 284

Query: 258 FWLEINVQ 265
           ++LE+N +
Sbjct: 285 YFLEMNTR 292


>gi|326779198|ref|ZP_08238463.1| Methylcrotonoyl-CoA carboxylase., Pyruvate carboxylase
           [Streptomyces cf. griseus XylebKG-1]
 gi|326659531|gb|EGE44377.1| Methylcrotonoyl-CoA carboxylase., Pyruvate carboxylase
           [Streptomyces cf. griseus XylebKG-1]
          Length = 648

 Score = 38.5 bits (88), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 53/101 (52%), Gaps = 10/101 (9%)

Query: 83  GILASALSM--DKMRSKQVVSSCGVPVCP----SILVNRFTMDSQHLISPPYVIKPLKGG 136
           G  A+A+S+  DK+R+K+ V++ GVPV P    S L +    ++   I  P ++KP  GG
Sbjct: 107 GPPAAAISLMGDKIRAKETVAAYGVPVVPGSSGSGLTDAQLEEAAREIGTPVLLKPSAGG 166

Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHG----DQLLIEQYVD 173
              G+ +++    +  ++  +          D LL+E+++D
Sbjct: 167 GGKGMRLVRDAAVLGEEIAAARREARASFGDDTLLVERWID 207


>gi|68536636|ref|YP_251341.1| acyl-CoA carboxylase, alpha subunit [Corynebacterium jeikeium K411]
 gi|68264235|emb|CAI37723.1| acyl-CoA carboxylase, alpha subunit [Corynebacterium jeikeium K411]
          Length = 702

 Score = 38.5 bits (88), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 39/184 (21%), Positives = 80/184 (43%), Gaps = 14/184 (7%)

Query: 92  DKMRSKQVVSSCGVPVCPSI----LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147
           DK+ ++  V S  VP  P I    L ++  +D+   +  P +IKP  GG   G+ ++++ 
Sbjct: 124 DKITARATVESRDVPTVPGISRPNLTDQEIIDAADSVGFPVLIKPSAGGGGKGMHLVEEP 183

Query: 148 QSIPLDLL----QSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSY 202
           + +   L+    +++S    D L +E +VD    +   ++ D+  +V  +   +      
Sbjct: 184 EKLASALVSARREAASSFGDDTLFLEHFVDTPRHIEVQIVADSHGNVIHLGERECSLQRR 243

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS-RKVFWLE 261
             K      + +L  K      +E+   A  A +A G  G    +F+       + F++E
Sbjct: 244 HQKVIEEAPSALLDEK----TRQEIGEAACDAARACGYCGAGTVEFIVSAKQPERFFFME 299

Query: 262 INVQ 265
           +N +
Sbjct: 300 MNTR 303


>gi|260577837|ref|ZP_05845771.1| acyl-CoA carboxylase, alpha subunit [Corynebacterium jeikeium ATCC
           43734]
 gi|258604064|gb|EEW17307.1| acyl-CoA carboxylase, alpha subunit [Corynebacterium jeikeium ATCC
           43734]
          Length = 702

 Score = 38.5 bits (88), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 39/184 (21%), Positives = 80/184 (43%), Gaps = 14/184 (7%)

Query: 92  DKMRSKQVVSSCGVPVCPSI----LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147
           DK+ ++  V S  VP  P I    L ++  +D+   +  P +IKP  GG   G+ ++++ 
Sbjct: 124 DKITARATVESRDVPTVPGISRPNLTDQEIIDAADSVGFPVLIKPSAGGGGKGMHLVEEP 183

Query: 148 QSIPLDLL----QSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSY 202
           + +   L+    +++S    D L +E +VD    +   ++ D+  +V  +   +      
Sbjct: 184 EKLASALVSARREAASSFGDDTLFLEHFVDTPRHIEVQIVADSHGNVIHLGERECSLQRR 243

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS-RKVFWLE 261
             K      + +L  K      +E+   A  A +A G  G    +F+       + F++E
Sbjct: 244 HQKVIEEAPSALLDEK----TRQEIGEAACDAARACGYCGAGTVEFIVSAKQPERFFFME 299

Query: 262 INVQ 265
           +N +
Sbjct: 300 MNTR 303


>gi|225028541|ref|ZP_03717733.1| hypothetical protein EUBHAL_02820 [Eubacterium hallii DSM 3353]
 gi|224954142|gb|EEG35351.1| hypothetical protein EUBHAL_02820 [Eubacterium hallii DSM 3353]
          Length = 1154

 Score = 38.5 bits (88), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 35/181 (19%), Positives = 76/181 (41%), Gaps = 14/181 (7%)

Query: 92  DKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP----PYVIKPLKGGSSLGIIVIKKD 147
           DK+ SK++     VP+ P +      +D    I+     P ++K   GG   G+ ++ ++
Sbjct: 124 DKISSKKIAIEANVPIIPGVDYAIKEVDEAKKIAAQVGYPVMLKASNGGGGRGMRIVNRE 183

Query: 148 QSIPLDLLQSSSWNH----GDQLLIEQYVDGIE-LTCGVMGDASLDVTEIAVPKSDFYSY 202
           + +  +  ++ + +      D + IE+Y+ G + +   ++GD   +V  +          
Sbjct: 184 EDLEKEFNEAKNESKKAFGDDMIFIEKYLKGPKHIEVQIVGDNYGNVVHLYDRDCSVQRR 243

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
             K         +P  +  +I+    RLA    + +G R     +FL D      +++E+
Sbjct: 244 HQKVVEYAPAFSIPETVRQEIFDASIRLA----KTVGYRNAGTLEFLVDA-DNHPYFIEM 298

Query: 263 N 263
           N
Sbjct: 299 N 299


>gi|167627087|ref|YP_001677587.1| phosphoribosylglycinamide formyltransferase 2 [Francisella
           philomiragia subsp. philomiragia ATCC 25017]
 gi|167597088|gb|ABZ87086.1| Phosphoribosylaminoimidazole carboxylase [Francisella philomiragia
           subsp. philomiragia ATCC 25017]
          Length = 385

 Score = 38.5 bits (88), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 24/93 (25%), Positives = 47/93 (50%), Gaps = 5/93 (5%)

Query: 86  ASALSMDKMRSKQVVSS-CGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGII 142
           A+ L+MD+   + + ++  G+        N  +  +D+  +I  P+VIKP+   S  G  
Sbjct: 100 ATKLTMDRQGIRSLAANELGLATSKFAFANSQKEYLDAVEVIGLPFVIKPVMSSSGKGQS 159

Query: 143 VIKKDQSI--PLDLLQSSSWNHGDQLLIEQYVD 173
           ++K+   +    D  QS S  H   +++EQ++D
Sbjct: 160 IVKEHSEVQKAWDYAQSGSRGHAKGVIVEQFID 192


>gi|256372246|ref|YP_003110070.1| Phosphoribosylaminoimidazole carboxylase [Acidimicrobium
           ferrooxidans DSM 10331]
 gi|256008830|gb|ACU54397.1| Phosphoribosylaminoimidazole carboxylase [Acidimicrobium
           ferrooxidans DSM 10331]
          Length = 363

 Score = 38.5 bits (88), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 44/78 (56%), Gaps = 4/78 (5%)

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGII 142
           G +A A   +K R + + ++ G+P  P+ LV+R   +   L  PPY++K ++GG   G  
Sbjct: 91  GAVAMATGSNKERQRALFTTLGLPTIPAQLVDRDVGEVPTL-EPPYLLKAVRGGYD-GRG 148

Query: 143 VIKKDQSIPLDLLQSSSW 160
           +++ D ++  +L ++  W
Sbjct: 149 LLRVDATV--ELPRTGRW 164


>gi|315047656|ref|XP_003173203.1| hypothetical protein MGYG_05791 [Arthroderma gypseum CBS 118893]
 gi|311343589|gb|EFR02792.1| hypothetical protein MGYG_05791 [Arthroderma gypseum CBS 118893]
          Length = 687

 Score = 38.5 bits (88), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 26/105 (24%), Positives = 50/105 (47%), Gaps = 3/105 (2%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +H +  P ++KP  G  S G+  ++  Q +   +   +   HG    +E+Y DG E+   
Sbjct: 380 EHNLEFPLIMKPCTGYLSEGVSRVESLQQLEASIRAINVERHGAAFTLEKYCDGPEVDAN 439

Query: 181 -VMGDASLDVTEIA--VPKSDFYSYELKYSSLNSTHVLPAKIPLD 222
            ++ D  +   EI+   PK    + + K   +   ++LP+K+P D
Sbjct: 440 FILCDGEVLFFEISDEFPKDADINGQGKTGFMERGNILPSKLPDD 484


>gi|124266215|ref|YP_001020219.1| cyanophycin synthetase [Methylibium petroleiphilum PM1]
 gi|124258990|gb|ABM93984.1| cyanophycin synthetase [Methylibium petroleiphilum PM1]
          Length = 755

 Score = 38.5 bits (88), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 27/103 (26%), Positives = 53/103 (51%), Gaps = 7/103 (6%)

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGII 142
           +A  ++ DK  +K+++ SCGVPV    +V+      ++   I  P  +KP  G    G+ 
Sbjct: 247 IAEGIAGDKDLTKRLLKSCGVPVPEGEVVDSVEAAWEAAQDIGLPVALKPTDGNHGRGVT 306

Query: 143 VIKKDQSIPLDLLQSSSWN--HGDQLLIEQYVDGIELTCGVMG 183
           +   D +   D+  + ++   HG ++++E++V G E    V+G
Sbjct: 307 L---DLTSREDIEAAYAYADLHGSEVMVERHVPGQEHRLLVVG 346


>gi|206901331|ref|YP_002251484.1| carbamoyl-phosphate synthase, large subunit [Dictyoglomus
           thermophilum H-6-12]
 gi|206740434|gb|ACI19492.1| carbamoyl-phosphate synthase, large subunit [Dictyoglomus
           thermophilum H-6-12]
          Length = 1054

 Score = 38.5 bits (88), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 56/233 (24%), Positives = 102/233 (43%), Gaps = 17/233 (7%)

Query: 42  VGLVLAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSK 97
           V  ++   KPD     L G  G +  ++     ILE   +P   + + + +++ D+   +
Sbjct: 71  VERIIEKEKPDGIIATLGGQTGLNLAMELASAGILEKYGVPLLGASLESISMAEDRELFR 130

Query: 98  QVVSSCGVPVCPSILVNRFTMDSQHL--ISPPYVIKPLK--GGSSLGIIVIKKDQSIPLD 153
           + +   G PV PS++V       + L  I  P VI+P    GG+  GI  ++  +     
Sbjct: 131 KRMEEIGEPVLPSVVVRSMEEGRKALEIIGLPLVIRPAYTLGGTGGGI--VETFEEFEKA 188

Query: 154 LLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEI-AVPKSDFYSYELKYSSLNS 211
           LL+S   +   Q L+E+ V G  E+   VM D   +V  + ++   D     +   + +S
Sbjct: 189 LLRSLRLSPVSQALLEKSVVGWKEIEFEVMRDRKGNVITVCSMENVD----PMGIHTGDS 244

Query: 212 THVLPAKIPLDIYKEVQRLAFLA-HQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
             V P +   DI  ++ R A L    A+   G     +  +P  R+ + +E+N
Sbjct: 245 IVVAPTQTLTDIEYQMLRTASLKIITALKIEGGCNIQYALNPNKREYYVIEVN 297


>gi|302878823|ref|YP_003847387.1| cyanophycin synthetase [Gallionella capsiferriformans ES-2]
 gi|302581612|gb|ADL55623.1| cyanophycin synthetase [Gallionella capsiferriformans ES-2]
          Length = 720

 Score = 38.5 bits (88), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 26/106 (24%), Positives = 53/106 (50%), Gaps = 5/106 (4%)

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--FTMDSQHLISPPYVIKPLKGGSS 138
            +  +A ++S DK  +K ++S+CGVPV    +V+      ++   I  P V+KP  G   
Sbjct: 203 QTSAIAESISRDKDLTKTLLSACGVPVPEGRIVDNPADAWEAAEDIGLPVVVKPTDGNHG 262

Query: 139 LGIIV-IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
            G+   +   + +    + + +   G ++++E+Y+ G E    V+G
Sbjct: 263 RGVSTELMTQEEVEAAFVLADA--QGSEVIVERYIRGNEHRLLVVG 306


>gi|255951707|ref|XP_002566620.1| Pc23g00610 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211904241|emb|CAP79555.1| Pc23g00610 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 671

 Score = 38.5 bits (88), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 31/127 (24%), Positives = 57/127 (44%), Gaps = 19/127 (14%)

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI--SPPYVI 130
           E L +P + S   A +++    RS+    SC +      L+++ T + ++ +   PP+++
Sbjct: 301 ECLGLPTSPSESFAKSVNKHNTRSELSPDSCRLVSSLDGLISQITSNERNALPPGPPWIV 360

Query: 131 KPLKGGSSLGIIVIKKDQ---------------SIPLDLLQSSSWNHGDQLLIEQYVDGI 175
           KP  G  SLG+  +   Q               S   ++ + S W     +LIE+Y DG 
Sbjct: 361 KPCFGWHSLGVHKVTTLQGLIEAVGKVSRQTAFSRTGEISKDSGWQ--TDVLIEEYCDGP 418

Query: 176 ELTCGVM 182
           E+ C  +
Sbjct: 419 EVDCNFV 425


>gi|166365487|ref|YP_001657760.1| cyanophycin synthetase [Microcystis aeruginosa NIES-843]
 gi|166087860|dbj|BAG02568.1| cyanophycin synthetase [Microcystis aeruginosa NIES-843]
          Length = 877

 Score = 38.5 bits (88), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 4/97 (4%)

Query: 82  SGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFTMDSQHLISPPYVIKPLKGGSS 138
           SGILA  L+ DK  +K ++   G+PV    ++   +  +   + +   P VIKPL G   
Sbjct: 209 SGILAVELACDKEGTKTILKDGGIPVPRGTVIQYLDELSAAIEEVGGFPIVIKPLDGNHG 268

Query: 139 LGI-IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
            GI I +K  Q        +S+ +    +++E+Y  G
Sbjct: 269 RGISIDVKTQQEAEEAYDLASAASKTRSVIVERYYKG 305


>gi|313675247|ref|YP_004053243.1| SSU ribosomal protein s6p modification protein [Marivirga tractuosa
           DSM 4126]
 gi|312941945|gb|ADR21135.1| SSU ribosomal protein S6P modification protein [Marivirga tractuosa
           DSM 4126]
          Length = 303

 Score = 38.5 bits (88), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 6/80 (7%)

Query: 70  AILELLEIPYTHSGI--LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHL 123
           A++   E+  T S +  LA   S DK+RS Q++S  G+ +  +   NR         +HL
Sbjct: 75  AVVRQFEMMKTFSAVDSLAITRSRDKLRSLQILSRSGLAMPRTAFTNRSENAGEYILEHL 134

Query: 124 ISPPYVIKPLKGGSSLGIIV 143
              P V+K L+G   LG+++
Sbjct: 135 GKAPVVLKLLEGTQGLGVVL 154


>gi|20804025|emb|CAD31602.1| PUTATIVE LIGASE/CARBOXYLASE PROTEIN [Mesorhizobium loti R7A]
          Length = 411

 Score = 38.1 bits (87), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 51/236 (21%), Positives = 97/236 (41%), Gaps = 18/236 (7%)

Query: 14  VSLSSGKACASALEDAGFKVSQIDVDRSVGLV--LAHLKPDLAFNVLHGNFGEDGLVQAI 71
           ++LS+  A    L   G +  ++D D    L+   + L+       + G  G+D  V A 
Sbjct: 31  ITLSADPAQYDYLAAEGIEAIRVDTDNLDALIHECSRLRATYEIAGITGFAGDDESVSAT 90

Query: 72  LELLEIPYTHSGILASALSM--DKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPP 127
           +  L   +   G   +++    DK   +Q++S  GVP+    L    T        I  P
Sbjct: 91  VGKLCRHFDLPGPNPASIERCCDKFTQRQLLSEAGVPIPAYRLAANATEVESCAAEIGLP 150

Query: 128 YVIKPLKGGSSLGIIVIKKDQSIPLD----LLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
            V+KP  G  S+G+ + +  + +       L    +W    ++L+E++  G      VMG
Sbjct: 151 VVLKPAVGSGSIGVRLCRSVEEVAEHTTYLLDGKHTWQSSPKILVEEFAQGPYYCTLVMG 210

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
           +  L      +  +DF      +  L S  + PA +  D ++ +  ++    +A+G
Sbjct: 211 NEVL-----GIGAADFGPLP-HFVFLRS--IFPAPVTDDEHRRIADVSLSCLRALG 258


>gi|218437868|ref|YP_002376197.1| cyanophycin synthetase [Cyanothece sp. PCC 7424]
 gi|218170596|gb|ACK69329.1| cyanophycin synthetase [Cyanothece sp. PCC 7424]
          Length = 879

 Score = 38.1 bits (87), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 29/100 (29%), Positives = 47/100 (47%), Gaps = 8/100 (8%)

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSIL---VNRFTMDSQHLISPPYVIKPLKGGS 137
           HSGILA  L+ DK  +K ++   G+PV    +   V+      + +   P V+KPL G  
Sbjct: 208 HSGILAVELACDKEGTKTILQDAGIPVPKGTVIQYVDELAEAIEDVGGFPIVVKPLDGNH 267

Query: 138 SLGIIVIK---KDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
             GI +     ++     DL  ++S      ++IE+Y  G
Sbjct: 268 GRGITIDVNSWEEAEEAYDLASTASKTR--SVIIERYYRG 305


>gi|159028776|emb|CAO89947.1| cphA [Microcystis aeruginosa PCC 7806]
          Length = 877

 Score = 38.1 bits (87), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 4/97 (4%)

Query: 82  SGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFTMDSQHLISPPYVIKPLKGGSS 138
           SGILA  L+ DK  +K ++   G+PV    ++   +  +   + +   P VIKPL G   
Sbjct: 209 SGILAVELACDKEGTKTILKDGGIPVPRGTVIQYLDELSAAIEEVGGFPIVIKPLDGNHG 268

Query: 139 LGI-IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
            GI I +K  Q        +S+ +    +++E+Y  G
Sbjct: 269 RGISIDVKTQQEAEEAYDLASAASKTRSVIVERYYKG 305


>gi|187934420|ref|YP_001887426.1| carbamoyl-phosphate synthase large chain [Clostridium botulinum B
           str. Eklund 17B]
 gi|187722573|gb|ACD23794.1| phosphoribosylglycinamide synthetase family protein [Clostridium
           botulinum B str. Eklund 17B]
          Length = 383

 Score = 38.1 bits (87), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 35/185 (18%), Positives = 81/185 (43%), Gaps = 16/185 (8%)

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQ 148
           +S +K   ++V     +P    I + + T   + +I  P ++KP     S GI  +   Q
Sbjct: 100 ISTNKFEMRKVFYKNNIPSPKFIYITKDTNLEELIIDYPVIVKPTDRSGSRGINKVYNLQ 159

Query: 149 SIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS 208
            +   + ++   +   + LIE++ +G E +   + +           K +F +   K+++
Sbjct: 160 EMKYAVKEAIEVSFNKEALIEEFAEGREFSVEYISENG---------KHNFLAITEKFTT 210

Query: 209 -----LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEI 262
                + + H+ PA+I  +  ++++ +   A  A+  + G S S+   D  +  +  +EI
Sbjct: 211 GEPHFIETAHMQPARITREQEEKIKEIIPQALTALKIKNGASHSELKIDE-NNNIKIIEI 269

Query: 263 NVQPG 267
             + G
Sbjct: 270 GARMG 274


>gi|297194259|ref|ZP_06911657.1| acetyl/propionyl CoA carboxylase alpha subunit [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|197720551|gb|EDY64459.1| acetyl/propionyl CoA carboxylase alpha subunit [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 663

 Score = 38.1 bits (87), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 50/97 (51%), Gaps = 10/97 (10%)

Query: 87  SALSM--DKMRSKQVVSSCGVPVCP----SILVNRFTMDSQHLISPPYVIKPLKGGSSLG 140
           SA+S+  DK+R+K+ V + GVPV P    S L +     +   I  P ++KP  GG   G
Sbjct: 110 SAISLMGDKIRAKETVKAAGVPVVPGSSGSGLSDEELAAAAREIGMPVLLKPSAGGGGKG 169

Query: 141 IIVIKKDQSIPLDLLQSSSWNHG----DQLLIEQYVD 173
           + + + + ++  ++  +          D LL+E+++D
Sbjct: 170 MRLTRVESALMDEIAAARREARASFGDDTLLVERWID 206


>gi|71908877|ref|YP_286464.1| cyanophycin synthetase [Dechloromonas aromatica RCB]
 gi|71848498|gb|AAZ47994.1| Cyanophycin synthetase [Dechloromonas aromatica RCB]
          Length = 751

 Score = 38.1 bits (87), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 30/121 (24%), Positives = 56/121 (46%), Gaps = 7/121 (5%)

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF--T 117
           GN  + G   A+  +       +  +A  +S DK  +K+++SS GVPV     V+     
Sbjct: 188 GNLVQLGYGAAMRRIWTAETDQTSAIAETISRDKDLTKELISSVGVPVPEGREVDSADDA 247

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS--SWNHGDQLLIEQYVDGI 175
            ++   I  P V+KP  G    G+ +   D +   ++ ++   +   G  +L+E+ + GI
Sbjct: 248 WEAAEDIGVPVVVKPTDGNHGRGVFI---DLTTKEEVAKAYAIATEEGSGVLVERSIQGI 304

Query: 176 E 176
           E
Sbjct: 305 E 305


>gi|241763202|ref|ZP_04761261.1| cyanophycin synthetase [Acidovorax delafieldii 2AN]
 gi|241367701|gb|EER61967.1| cyanophycin synthetase [Acidovorax delafieldii 2AN]
          Length = 736

 Score = 38.1 bits (87), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 26/102 (25%), Positives = 51/102 (50%), Gaps = 5/102 (4%)

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGII 142
           +A  ++ DK  +K ++ SCGVP+    +VN      ++   I  P V+KP  G    G+ 
Sbjct: 213 IAEGIASDKDLTKSLLKSCGVPIPEGQVVNSPEEAWEAAQDIGLPVVVKPSDGNHGRGVT 272

Query: 143 V-IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           + + K + I  +     ++  G  +++E+++ G E    V+G
Sbjct: 273 LDLHKKEDI--EAAYHVAYPEGSDVMVERFIPGDEHRLLVVG 312


>gi|171694463|ref|XP_001912156.1| hypothetical protein [Podospora anserina S mat+]
 gi|170947180|emb|CAP73985.1| unnamed protein product [Podospora anserina S mat+]
          Length = 745

 Score = 38.1 bits (87), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 46/175 (26%), Positives = 75/175 (42%), Gaps = 19/175 (10%)

Query: 27  EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           EDAG       VDR +  ++++  P      L  NF     V  + E L +P   S + A
Sbjct: 309 EDAGV------VDRIIQSIVSYPLPIHGVFTLSDNFFV--AVAQVAEALGLPT--SPVAA 358

Query: 87  SALSMDKMRSK-------QVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSL 139
              S+DK RS+       Q      V    S+L +     ++ +   P ++KP KG SS 
Sbjct: 359 FETSVDKYRSRLLQNVPCQTARVHNVRELESLLASGGNQQAEFIPRFPLIVKPTKGWSSE 418

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG-VMGDASLDVTEIA 193
            +  +     +    +Q ++  HG   +IE + DG E+    V+ D  +  +EIA
Sbjct: 419 CVSKVNNLADL-ATAVQKATSRHGSAAVIEPFFDGPEMDVNFVLLDGEILFSEIA 472


>gi|333027644|ref|ZP_08455708.1| putative carboxylase [Streptomyces sp. Tu6071]
 gi|332747496|gb|EGJ77937.1| putative carboxylase [Streptomyces sp. Tu6071]
          Length = 854

 Score = 38.1 bits (87), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 34/137 (24%), Positives = 67/137 (48%), Gaps = 14/137 (10%)

Query: 92  DKMRSKQVVSSCGVPVCPSILVNRFTMDSQH--LISPPYVIKPLKGGSSLGIIVIKKDQS 149
           DK  ++++ +  GVP   S+ V      +Q    I  P V+KP    +S+G+I   + ++
Sbjct: 549 DKGTTRRLFAEAGVPSARSVRVQSVHEAAQAAATIGYPVVLKPASHAASIGVIKASRPEA 608

Query: 150 IPLDLLQSSSWNHGDQ------LLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDF 199
           +  +  + ++   G+Q      +L+E+Y+DG E++   M  A    +L VT   V  + F
Sbjct: 609 L-AEAWEFANAGAGEQGPEGHGVLVEEYLDGPEISVECMTFAGETVALAVTRKEVSFAPF 667

Query: 200 YSYELKYSSLNSTHVLP 216
           +  E+ ++      +LP
Sbjct: 668 FE-EVGHTVERDDSLLP 683


>gi|221069121|ref|ZP_03545226.1| cyanophycin synthetase [Comamonas testosteroni KF-1]
 gi|220714144|gb|EED69512.1| cyanophycin synthetase [Comamonas testosteroni KF-1]
          Length = 748

 Score = 38.1 bits (87), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 30/135 (22%), Positives = 61/135 (45%), Gaps = 5/135 (3%)

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFT 117
           GN  + G   A   +       +  +A  ++ DK  +K+++++CGVPV    +V      
Sbjct: 210 GNLVQLGYGAAQRRIWTAESDQTSAIAEGIAQDKDFTKRLLAACGVPVPEGQIVASPEEA 269

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIV-IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
            +    I  P  +KP  G  + G+ + + K+  I      +     G  +++E+++DG+E
Sbjct: 270 WEVAQDIGFPVTVKPSDGNHARGVTLELSKEADIKAAFALAQP--EGSDVIVEKFIDGVE 327

Query: 177 LTCGVMGDASLDVTE 191
               V+G   +  T+
Sbjct: 328 HRLLVVGGKVVAATK 342


>gi|299529567|ref|ZP_07043004.1| cyanophycin synthetase [Comamonas testosteroni S44]
 gi|298722430|gb|EFI63350.1| cyanophycin synthetase [Comamonas testosteroni S44]
          Length = 748

 Score = 38.1 bits (87), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 30/135 (22%), Positives = 61/135 (45%), Gaps = 5/135 (3%)

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFT 117
           GN  + G   A   +       +  +A  ++ DK  +K+++++CGVPV    +V      
Sbjct: 210 GNLVQLGYGAAQRRIWTAESDQTSAIAEGIAQDKDFTKRLLAACGVPVPEGQIVASPEEA 269

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIV-IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
            +    I  P  +KP  G  + G+ + + K+  I      +     G  +++E+++DG+E
Sbjct: 270 WEVAQDIGFPVTVKPSDGNHARGVTLELSKEADIKAAFALAQP--EGSDVIVEKFIDGVE 327

Query: 177 LTCGVMGDASLDVTE 191
               V+G   +  T+
Sbjct: 328 HRLLVVGGKVVAATK 342


>gi|283138935|gb|ADB12538.1| transcription-repair coupling factor [uncultured bacterium 9F08]
          Length = 1155

 Score = 38.1 bits (87), Expect = 1.5,   Method: Composition-based stats.
 Identities = 36/144 (25%), Positives = 72/144 (50%), Gaps = 7/144 (4%)

Query: 19   GKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIP 78
            G+  +  + + GF +    ++R+V  +    +P+L   +LHG   + G V A++    +P
Sbjct: 970  GEEQSGQMHEIGFSLYTELLERAVKSLREGQEPELERPLLHGTEVDLG-VPALIPDDYLP 1028

Query: 79   YTHSGI-----LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPL 133
              HS +     +A+A S+++++  QV       + P  + N FT+    L + PY I  +
Sbjct: 1029 DVHSRLQLYKRIANAASVEELKELQVEMIDRFGLLPEPVKNLFTLTDLKLRATPYGITKI 1088

Query: 134  KGGSSLGIIVIKKDQSI-PLDLLQ 156
            + G++ G I   K+  I P+ L++
Sbjct: 1089 ELGAAGGRISFNKEPDIDPMHLIR 1112


>gi|319407302|emb|CBI80943.1| Biotin carboxylase [Bartonella sp. 1-1C]
          Length = 452

 Score = 38.1 bits (87), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 47/224 (20%), Positives = 96/224 (42%), Gaps = 31/224 (13%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP----SILVN 114
           +G   E+     +LE   I +         +  DK+ +K+   S G+PV P    +I+  
Sbjct: 82  YGFLSENAKFADVLEAHNITFIGPTAAHIRIMGDKIEAKKTAKSLGIPVVPGSDNAIVEE 141

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGDQLLIEQ 170
           +  +   + I  P +IK   GG   G+ V   +Q +         ++S+  + D + IE+
Sbjct: 142 KEALRIANEIGYPVIIKASAGGGGRGMKVAHSEQKLLAAFKTARSEASAAFNDDSVYIEK 201

Query: 171 YVDG---IELTCGVMGDAS-----LDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAKIPL 221
           Y++    IE+   ++GD +     L   + ++ +     +E  YS  LN           
Sbjct: 202 YLEKPRHIEIQ--IIGDGAGNAIHLGERDCSLQRRHQKVWEEAYSPILNEAE-------- 251

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
              K++  +   A   +G RG    +FL++  + + +++E+N +
Sbjct: 252 --RKKIGNIVANACAKLGYRGAGTVEFLYE--NGEFYFIEMNTR 291


>gi|217968162|ref|YP_002353668.1| carbamoyl-phosphate synthase, large subunit [Dictyoglomus turgidum
           DSM 6724]
 gi|217337261|gb|ACK43054.1| carbamoyl-phosphate synthase, large subunit [Dictyoglomus turgidum
           DSM 6724]
          Length = 1054

 Score = 38.1 bits (87), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 56/230 (24%), Positives = 101/230 (43%), Gaps = 17/230 (7%)

Query: 45  VLAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVV 100
           ++   KPD     L G  G +  ++     ILE   IP   + + + +++ D+   ++ +
Sbjct: 74  IIEKEKPDGIIATLGGQTGLNLAMELASIGILEKYGIPLLGASLESISMAEDRELFRKRM 133

Query: 101 SSCGVPVCPSILVNRFTMDSQHL--ISPPYVIKPLK--GGSSLGIIVIKKDQSIPLDLLQ 156
              G PV PS++V       + L  I  P VI+P    GG+  GI  ++  +     LL+
Sbjct: 134 EEIGEPVLPSVVVRSMEEGRKALEIIGLPLVIRPAYTLGGTGGGI--VESVEEFEKALLR 191

Query: 157 SSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEI-AVPKSDFYSYELKYSSLNSTHV 214
           S   +   Q L+E+ V G  E+   VM D   +V  + ++   D     +   + +S  V
Sbjct: 192 SLKLSPVSQALLEKSVVGWKEIEFEVMRDRKGNVITVCSMENVD----PMGIHTGDSIVV 247

Query: 215 LPAKIPLDIYKEVQRLAFLA-HQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            P +   DI  ++ R A L    A+   G     +  +P  R+ + +E+N
Sbjct: 248 APTQTLNDIEYQMLRTASLKIITALKIEGGCNIQYALNPNKREYYVIEVN 297


>gi|264676746|ref|YP_003276652.1| cyanophycin synthetase [Comamonas testosteroni CNB-2]
 gi|262207258|gb|ACY31356.1| cyanophycin synthetase [Comamonas testosteroni CNB-2]
          Length = 748

 Score = 38.1 bits (87), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 30/135 (22%), Positives = 61/135 (45%), Gaps = 5/135 (3%)

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFT 117
           GN  + G   A   +       +  +A  ++ DK  +K+++++CGVPV    +V      
Sbjct: 210 GNLVQLGYGAAQRRIWTAESDQTSAIAEGIAQDKDFTKRLLAACGVPVPEGQIVASPEEA 269

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIV-IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
            +    I  P  +KP  G  + G+ + + K+  I      +     G  +++E+++DG+E
Sbjct: 270 WEVAQDIGFPVTVKPSDGNHARGVTLELSKEADIKAAFALAQP--EGSDVIVEKFIDGVE 327

Query: 177 LTCGVMGDASLDVTE 191
               V+G   +  T+
Sbjct: 328 HRLLVVGGKVVAATK 342


>gi|288920466|ref|ZP_06414774.1| phosphoribosylamine/glycine ligase [Frankia sp. EUN1f]
 gi|288348118|gb|EFC82387.1| phosphoribosylamine/glycine ligase [Frankia sp. EUN1f]
          Length = 421

 Score = 38.1 bits (87), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 23/95 (24%), Positives = 51/95 (53%), Gaps = 3/95 (3%)

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL--ISPPYVIKPLKGGSSLGIIV 143
           A+ L   K  +K+++ + GVP   S      +     L    PPYV+K   G ++   + 
Sbjct: 96  AARLEGSKAFAKEIMRAAGVPTADSRDHTEISSALADLDTFGPPYVVK-YDGLAAGKGVT 154

Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           +  D+ + ++ +++S  +  D++++E+Y+DG E++
Sbjct: 155 VTTDRDVAVEAVRASLRDTDDRVVLEEYLDGPEVS 189


>gi|86607545|ref|YP_476307.1| phosphoribosylamine--glycine ligase [Synechococcus sp.
           JA-2-3B'a(2-13)]
 gi|86556087|gb|ABD01044.1| phosphoribosylamine--glycine ligase [Synechococcus sp.
           JA-2-3B'a(2-13)]
          Length = 431

 Score = 38.1 bits (87), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 39/165 (23%), Positives = 76/165 (46%), Gaps = 17/165 (10%)

Query: 67  LVQAILELLE---IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT-----M 118
           LVQ I++  +   +P       A+ L   K+ +KQ++   G+P   +      +     +
Sbjct: 76  LVQGIVDAFQAAGLPIFGPSRAAAQLEGSKLWAKQLMQEAGIPTARATGFAELSAAVAYL 135

Query: 119 DSQHLISPPYVIKPLKGGSSLGI-IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
           DSQ     P VIK  K G + G  + + +++   +  L+++    GDQ+LIE+++ G E+
Sbjct: 136 DSQSF---PVVIK--KDGLAAGKGVTVAQNREEAVQALEAALAKPGDQVLIEEFIPGQEV 190

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD 222
           +   + D  + V    +P +  Y    +  +  +T  + A  P D
Sbjct: 191 SVLALTDGQICVP---LPPAQDYKRLGEGDTGPNTGGMGAHAPAD 232


>gi|319408519|emb|CBI82172.1| Biotin carboxylase [Bartonella schoenbuchensis R1]
          Length = 448

 Score = 38.1 bits (87), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 49/224 (21%), Positives = 103/224 (45%), Gaps = 22/224 (9%)

Query: 56  NVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--- 109
           + +H  +G   E+     ILE  EI +         +  DK+ +K+   + G+P+ P   
Sbjct: 76  DAIHPGYGFLSENAKFADILEAHEITFIGPTSAHIRIMGDKIEAKKTAKNLGIPIVPGSD 135

Query: 110 -SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK--KDQSIPLDLLQSSSWN--HGD 164
            ++   +  +     I  P +IK   GG   G+ V++  K+ S   +  +S +    + D
Sbjct: 136 GAVTDEKEALRIIDEIGYPVIIKASAGGGGRGMKVVRSEKELSTAFNTARSEARAAFNDD 195

Query: 165 QLLIEQYVDG---IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL 221
            + IE+Y++    IE+   V+GD + +   I + + D  S + ++  +      PA   L
Sbjct: 196 AVYIEKYLEKPRHIEIQ--VIGDGAGNA--IHLGERDC-SLQRRHQKVWEEAYSPALNEL 250

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +  K++  +   A   +G RG    +FL++  + + +++E+N +
Sbjct: 251 E-RKKIGSIVANACAKLGYRGAGTIEFLYE--NGEFYFIEMNTR 291


>gi|302341652|ref|YP_003806181.1| D-alanine--D-alanine ligase domain protein [Desulfarculus baarsii
           DSM 2075]
 gi|301638265|gb|ADK83587.1| D-alanine--D-alanine ligase domain protein [Desulfarculus baarsii
           DSM 2075]
          Length = 340

 Score = 38.1 bits (87), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 69/278 (24%), Positives = 111/278 (39%), Gaps = 40/278 (14%)

Query: 45  VLAHLKPDLAFNVLHGNFGEDGLVQ---AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
            L  L+PD+ FN++    G   ++     +LE L + YT +G     L+  K+ +K+ + 
Sbjct: 54  ALEELRPDVVFNLVETPLGMARMIHLAPLLLERLRLRYTGAGARGMLLTSQKLLAKKAMR 113

Query: 102 SCGVPVCPSILVNRFTMDSQHLISP--PYVIKPLKGGSSLGIIVIKKDQSI--PLD--LL 155
              +P  P     R   D     SP   Y++K +    S+G+     D SI  PL    +
Sbjct: 114 ESNLPT-PDWCGPR---DDGLPFSPLRRYIVKSVWEHGSVGL----DDHSIIKPLGRAAM 165

Query: 156 QSSSWNHGDQL----LIEQYVDGIELT----CGVMGDASLDVTEIAVP-----KSDFYSY 202
           +++    G  L      E Y+DG E       G  G   L   EI        K     Y
Sbjct: 166 RAAIAQRGKALGGDCFAEAYIDGREFNIAILAGSRGPEVLPPAEITFEGFQPGKPHIVGY 225

Query: 203 ELKY--SSLNSTHVLPAKI---PLD--IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255
             K+   S    H  P +    P D  +   ++ ++    +  G RG +R DF  D   R
Sbjct: 226 RAKWVEDSHEYNHT-PRRFDFEPRDAELLARLKAMSLRCWRLFGLRGWARVDFRVDRKGR 284

Query: 256 KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
             F LE+N  P +   + F   A  AG   + +++W +
Sbjct: 285 P-FILEVNANPCLADDAGFMAAARRAGLD-QTIVVWRI 320


>gi|271965644|ref|YP_003339840.1| acetyl-CoA carboxylase, biotin carboxylase [Streptosporangium
           roseum DSM 43021]
 gi|270508819|gb|ACZ87097.1| acetyl-CoA carboxylase, biotin carboxylase [Streptosporangium
           roseum DSM 43021]
          Length = 450

 Score = 38.1 bits (87), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 44/198 (22%), Positives = 88/198 (44%), Gaps = 19/198 (9%)

Query: 80  THSGILASALSM--DKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP----PYVIKPL 133
           T  G  AS LS   DK +++++  + G+PV P    +  T++    ++     P +IK  
Sbjct: 101 TFIGPSASLLSRLGDKAQAREIAQAAGLPVLPGSSRSLATLEQAKAVAGEIGYPVIIKAT 160

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNH---GD-QLLIEQYVDGIE-LTCGVMGDASLD 188
            GG   G+ V++  + +P    Q+ +      GD +L +E +++    +   V+GD +  
Sbjct: 161 AGGGGRGMTVVRDARDLPRAYAQARAGAQAAFGDPRLYLEMFLENARHIEVQVLGDGAGG 220

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           V ++   + D      +   +  T   PA  +P ++   +   A  A + +   G    +
Sbjct: 221 VVQLG--ERDCSVQRRRQKLIEET---PAPGLPREMADRICAAAVHAAREVNYAGAGTYE 275

Query: 248 FLFDPLSRKVFWLEINVQ 265
           FL D      F++E+N +
Sbjct: 276 FLVD--GDDFFFMEVNCR 291


>gi|146298802|ref|YP_001193393.1| phosphoribosylamine--glycine ligase [Flavobacterium johnsoniae
           UW101]
 gi|146153220|gb|ABQ04074.1| phosphoribosylamine--glycine ligase [Flavobacterium johnsoniae
           UW101]
          Length = 424

 Score = 38.1 bits (87), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 32/141 (22%), Positives = 62/141 (43%), Gaps = 21/141 (14%)

Query: 64  EDGLVQAILE-------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116
           ED LV+ + +       L  IP      L + L   K  +K+ +    +P       + F
Sbjct: 71  EDPLVKGVYDYFKNDDSLKHIPVIGPSKLGAQLEGSKEFAKEFLMKHNIPTAA---YDSF 127

Query: 117 TMDSQH-------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGDQ 165
           T ++          + PPYV+K     +  G+++I+  +    +L    + +       +
Sbjct: 128 TAETVEEGCKFLETLQPPYVLKADGLAAGKGVLIIQDLEEAKTELRNMLVHAKFGTASSK 187

Query: 166 LLIEQYVDGIELTCGVMGDAS 186
           ++IE+++DGIEL+C V+ D  
Sbjct: 188 VVIEEFLDGIELSCFVLTDGK 208


>gi|300311486|ref|YP_003775578.1| cyanophycin synthetase [Herbaspirillum seropedicae SmR1]
 gi|300074271|gb|ADJ63670.1| cyanophycin synthetase protein [Herbaspirillum seropedicae SmR1]
          Length = 732

 Score = 38.1 bits (87), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 26/105 (24%), Positives = 48/105 (45%), Gaps = 3/105 (2%)

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSS 138
            +  +A  +S DK  +K ++ +CGVPV    LV       ++   I  P V+KP      
Sbjct: 206 QTSAIAEGISRDKDLTKSLLETCGVPVPEGRLVESPEDAWEAAQDIGLPVVVKPCDANHG 265

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
            G+  I  +    ++     +   G  +L+E++V G+E    ++G
Sbjct: 266 RGVF-IDLNTREEIETAYKVALEEGSGVLVERFVPGLEHRLLIVG 309


>gi|163754704|ref|ZP_02161826.1| phosphoribosylamine--glycine ligase [Kordia algicida OT-1]
 gi|161325645|gb|EDP96972.1| phosphoribosylamine--glycine ligase [Kordia algicida OT-1]
          Length = 423

 Score = 38.1 bits (87), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 48/93 (51%), Gaps = 11/93 (11%)

Query: 109 PSILVNRFTMDS-----QHL--ISPPYVIKPLKGGSSLGIIVI----KKDQSIPLDLLQS 157
           P+     FT D+     Q L  + PPYV+K     +  G+++I    +   S+   L+ +
Sbjct: 120 PTAAYESFTKDTVEAGCQFLTTLKPPYVLKADGLAAGKGVLIIDDLQEAQNSLREMLVDA 179

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190
              +   +++IE+++DGIEL+C V+ D    VT
Sbjct: 180 KFGDASTKVVIEEFLDGIELSCFVLTDGKNYVT 212


>gi|113866801|ref|YP_725290.1| cyanophycin synthetase [Ralstonia eutropha H16]
 gi|113525577|emb|CAJ91922.1| cyanophycin synthetase [Ralstonia eutropha H16]
          Length = 877

 Score = 38.1 bits (87), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 25/103 (24%), Positives = 53/103 (51%), Gaps = 7/103 (6%)

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVNR--FTMDSQHLISPPYVIKPLKGGSSLGII 142
           +  ++S DK  +K ++ SCGVPV    +V+      D+   I  P V+KP  G    G+ 
Sbjct: 212 IGESISRDKDLTKSLLESCGVPVPEGRMVDSPADAWDAAEDIGVPVVVKPYDGNHGRGVF 271

Query: 143 --VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
             ++ +++   ++     + + G+ +++E+++ G E    V+G
Sbjct: 272 TNLMTREE---VETAYGVAIDEGNGVIVERFIPGNEHRLLVVG 311


>gi|308049117|ref|YP_003912683.1| alpha-L-glutamate ligase, RimK family [Ferrimonas balearica DSM
           9799]
 gi|307631307|gb|ADN75609.1| alpha-L-glutamate ligase, RimK family [Ferrimonas balearica DSM
           9799]
          Length = 302

 Score = 38.1 bits (87), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 24/91 (26%), Positives = 50/91 (54%), Gaps = 6/91 (6%)

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP---PYVIKPLKGGSSLGII 142
           A AL  DKM+S   ++  GVP+ P+ ++ RF +D+  ++     P V+K   G    G++
Sbjct: 100 AIALCGDKMQSAIALAHQGVPM-PAAMLARFPVDTDEVVRKMGMPVVLKTRSGSQGTGVM 158

Query: 143 VIKKDQSIPLDLLQ-SSSWNHGDQLLIEQYV 172
           +++ +     D++Q   + N   +++ ++YV
Sbjct: 159 LMRNESQFK-DMMQLMGNVNPKAEMMFQRYV 188


>gi|295837391|ref|ZP_06824324.1| carboxylase [Streptomyces sp. SPB74]
 gi|295826511|gb|EDY43029.2| carboxylase [Streptomyces sp. SPB74]
          Length = 408

 Score = 38.1 bits (87), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 36/142 (25%), Positives = 70/142 (49%), Gaps = 14/142 (9%)

Query: 92  DKMRSKQVVSSCGVPVCPSILVNRFTMDSQH--LISPPYVIKPLKGGSSLGIIVIKKDQS 149
           DK  ++++++  GVP   SI V      +Q    I  P V+KP    +S+G+I   + ++
Sbjct: 103 DKGTTRRLLAEAGVPSARSIRVQSAHEAAQAAATIGYPVVLKPASHAASIGVIKAARSEA 162

Query: 150 IPLDLLQSSSWNHGDQ------LLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDF 199
           +  +  + ++   G+Q      +L+E+Y+DG E++   M  A    +L VT   V  + F
Sbjct: 163 L-AEAWEFANAGAGEQGPEGHGVLVEEYLDGPEISVECMTFAGETVALAVTRKEVAFAPF 221

Query: 200 YSYELKYSSLNSTHVLPAKIPL 221
           +  E+ ++      +LP   P+
Sbjct: 222 FE-EVGHTVERDDPLLPLVSPV 242


>gi|320324143|gb|EFW80224.1| hypothetical protein PsgB076_13812 [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320328709|gb|EFW84709.1| hypothetical protein PsgRace4_17808 [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 415

 Score = 38.1 bits (87), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 48/104 (46%), Gaps = 14/104 (13%)

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSI--LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
           +AL+ DK   +Q  ++ G+   P    + N   +   H +  P VIKPL G SS G+++ 
Sbjct: 104 AALTRDKYLMRQAFAAAGL-RSPGFCYIDNPEDLSQAHALGFPLVIKPLSGWSSTGVMLA 162

Query: 145 KKDQSIP-----------LDLLQSSSWNHGDQLLIEQYVDGIEL 177
           K  + +P            DL +    +    L++EQY+ G E 
Sbjct: 163 KTVEELPNLVNAVWDVQSKDLARFYDQDKAVGLVVEQYLPGKEF 206


>gi|225554499|gb|EEH02796.1| 3-methylcrotonyl-CoA carboxylase biotin-containing subunit
           [Ajellomyces capsulatus G186AR]
          Length = 1280

 Score = 38.1 bits (87), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 41/183 (22%), Positives = 77/183 (42%), Gaps = 13/183 (7%)

Query: 92  DKMRSKQVVSSCGVPVCPSILVNRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKD 147
           DK RSK+++++ GVP  P    +  +M+        I  P +IK +KGG   G+ +    
Sbjct: 713 DKSRSKEIMTAAGVPCVPGYHGDNQSMEFLEAEAEKIKFPVLIKAVKGGGGKGMRIASSK 772

Query: 148 QSIPLDLLQSSSWNHG----DQLLIEQYVDGIE-LTCGVMGDASLDVTEIAVPKSDFYSY 202
           ++    L+ + S        D +L+E+Y+     +   V  D   +   +          
Sbjct: 773 ETFRDQLISAKSEAMNSFGDDTMLVEKYITTPRHIEVQVFADKHGNCVALGERDCSIQRR 832

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
             K    +    LP     DI+ + +  A     A+G  G    +F+FD  + + F++E+
Sbjct: 833 HQKILEESPAPHLPEATRKDIWDKARAAAL----AVGYEGAGTVEFIFDNDTGEFFFMEM 888

Query: 263 NVQ 265
           N +
Sbjct: 889 NTR 891


>gi|163855460|ref|YP_001629758.1| putative biotin carboxylase subunit of propionyl-CoA carboxylase
           [Bordetella petrii DSM 12804]
 gi|163259188|emb|CAP41488.1| putative biotin carboxylase subunit of propionyl-CoA carboxylase
           [Bordetella petrii]
          Length = 671

 Score = 38.1 bits (87), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 44/188 (23%), Positives = 83/188 (44%), Gaps = 24/188 (12%)

Query: 92  DKMRSKQVVSSCGVPVCPSI---LVNRFTMDS-QHLISPPYVIKPLKGGSSLGIIVIKKD 147
           DK R+K ++ + GVPV P       N  T+++    I  P ++KP  GG   G+ +I + 
Sbjct: 115 DKARAKALMRAAGVPVVPGTDEASDNPATIEALARAIELPILLKPSAGGGGKGMQIITQY 174

Query: 148 QSIPLDLLQS------SSWNHGDQLLIEQYVDGIE-LTCGVMGDASLDVTEIAVPKSDFY 200
             +P  L++S      SS+  G ++++E+Y++    +   V GD   +V  +       +
Sbjct: 175 DDLP-GLIESAIRVARSSFGDG-RMIVERYIEEPRHIEVQVFGDGCGNVVHL-------F 225

Query: 201 SYELKYSSLNSTHVLPAKIPLDIYKEVQRL---AFLAHQAIGCRGISRSDFLFDPLSRKV 257
             E      +   +  A  P    +  QRL   A    +++  R     +F+ D      
Sbjct: 226 ERECSLQRRHQKVMEEAPAPHLPERARQRLLEAAVQGARSLDYRNAGTFEFIMD-RDFNC 284

Query: 258 FWLEINVQ 265
           ++LE+N +
Sbjct: 285 YFLEVNTR 292


>gi|92113366|ref|YP_573294.1| SSU ribosomal protein S6P modification protein [Chromohalobacter
           salexigens DSM 3043]
 gi|122990548|sp|Q1QY63|RIMK_CHRSD RecName: Full=Ribosomal protein S6 modification protein
 gi|91796456|gb|ABE58595.1| SSU ribosomal protein S6P modification protein [Chromohalobacter
           salexigens DSM 3043]
          Length = 302

 Score = 38.1 bits (87), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 44/189 (23%), Positives = 88/189 (46%), Gaps = 28/189 (14%)

Query: 90  SMDKMRSKQVVS--SCGVPVC-----PSILVNRFTMDSQHLISPPYVIKPLKGGSSLGII 142
           S DK+RS Q++S    G+PV      P  + +  TM    +   P VIK L+G   +G++
Sbjct: 97  SRDKLRSLQLLSRKGLGLPVTGFAHSPDDIPDLITM----VKGAPLVIKLLEGTQGIGVV 152

Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYV---DGIELTCGVMGDASLDVTEIAVPKSDF 199
           + + +Q+    ++Q+      + +++++Y+    G ++ C V+GD  +   +    + +F
Sbjct: 153 LAETNQAAE-SVIQAFMGMKAN-IMVQEYIKEAKGADVRCLVIGDKVVAAMKRQAAEGEF 210

Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
            S   +  + +   + P         E +  A  A +A+G R I+  D L    +     
Sbjct: 211 RSNLHRGGTASVIRITP---------EERSTAIRAAKAMGLR-IAGVDLLRS--NHGPVI 258

Query: 260 LEINVQPGM 268
           +E+N  PG+
Sbjct: 259 MEVNSSPGL 267


>gi|332184864|gb|AEE27118.1| Phosphoribosylglycinamide formyltransferase 2 [Francisella cf.
           novicida 3523]
          Length = 386

 Score = 37.7 bits (86), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 5/93 (5%)

Query: 86  ASALSMDKMRSKQVVS-SCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGSSLGII 142
           A+ L+MD+   + + +    +P       N     +D+   I  P+VIKP+   S  G  
Sbjct: 100 ATKLTMDRQGIRALAADELNLPTSKFAFANNEQEYLDAIPSIEIPFVIKPIMSSSGKGQS 159

Query: 143 VIK--KDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
           ++K  KD     D  QS S  H   ++IEQ++D
Sbjct: 160 IVKEPKDIKKAWDYAQSGSRGHAKGVIIEQFID 192


>gi|312183629|gb|ADQ42384.1| pyruvate carboxylase subunit A [Methanosaeta harundinacea]
          Length = 495

 Score = 37.7 bits (86), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 44/189 (23%), Positives = 87/189 (46%), Gaps = 19/189 (10%)

Query: 90  SMDKMRSK----QVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGI 141
           S+D+M SK     ++ S GVP+ P     I      MD    I  P ++KP  GG  +G+
Sbjct: 109 SIDRMGSKIAARDIMKSAGVPIVPGSEGGISNPAEAMDLVEAIGYPVMLKPAAGGGGIGM 168

Query: 142 IVI--KKDQSIPLDLLQS--SSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPK 196
            ++  +KD +  LD  +S   S    + + IE+Y+ +   +   ++ D+      ++  +
Sbjct: 169 KIVWEEKDLAPALDSARSIARSAFSDETVYIEKYLTEPRHIEFQILADSKGKTIYVSDRE 228

Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256
               S + ++  L      P   P ++ +E+  +A  A +AI  R     +F++     +
Sbjct: 229 C---SIQRRHQKLIEESPSPIMTP-ELREEMGSIAVRAAEAIDYRSAGTVEFMYS--KGE 282

Query: 257 VFWLEINVQ 265
            ++LE+N +
Sbjct: 283 YYFLEMNTR 291


>gi|158312073|ref|YP_001504581.1| phosphoribosylamine--glycine ligase [Frankia sp. EAN1pec]
 gi|158107478|gb|ABW09675.1| phosphoribosylamine--glycine ligase [Frankia sp. EAN1pec]
          Length = 439

 Score = 37.7 bits (86), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 50/95 (52%), Gaps = 3/95 (3%)

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS--PPYVIKPLKGGSSLGIIV 143
           A+ L   K  +K+++ + GVP   S      +     L S  PPYV+K   G ++   + 
Sbjct: 96  AARLEGSKAFAKEIMRAAGVPTADSRDHTEISSALADLDSFGPPYVVK-YDGLAAGKGVT 154

Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           +  D+   +D +++S     D++++E+Y+DG E++
Sbjct: 155 VTTDRDAAVDAVRASLRGPDDRVVLEEYLDGPEVS 189


>gi|320100707|ref|YP_004176299.1| carbamoyl-phosphate synthase L chain ATP-binding protein
           [Desulfurococcus mucosus DSM 2162]
 gi|319753059|gb|ADV64817.1| Carbamoyl-phosphate synthase L chain ATP-binding protein
           [Desulfurococcus mucosus DSM 2162]
          Length = 502

 Score = 37.7 bits (86), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 47/198 (23%), Positives = 85/198 (42%), Gaps = 21/198 (10%)

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP---PYVIKPLKGGSSLGIIVI- 144
            + DK   K +     VP  P  +V+    D +        P V+KP +G    GI V+ 
Sbjct: 106 FTRDKPAVKTLAEKLDVPTLPWSIVDD-DADLEEFARAHGYPLVLKPARGAWGRGIRVLW 164

Query: 145 -KKDQSIPLDLLQSSSWNHGDQ-LLIEQYVDGIEL-TCGVMGDASLDVTEIAVPKSDFYS 201
            +KD       ++ +   +GD+ + +E Y+   +L    V+GD    +          Y 
Sbjct: 165 SEKDAEQLKTAVKEAEKLYGDRRIYVEPYMGSAKLLEVQVIGDGEKVI--------HLYE 216

Query: 202 YE--LKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
            E  L+   L +    P+K +  ++  ++   A    +A+  R  +  +FL+D  SR +F
Sbjct: 217 REASLQDDYLKTVIEAPSKTVSKELRDKLVGYAVAVGEALRLRNTATVEFLYDVRSRTLF 276

Query: 259 WLEINVQPGMTPVSIFPE 276
             E+N  PG++P  +  E
Sbjct: 277 LNEVN--PGLSPEHVATE 292


>gi|89900108|ref|YP_522579.1| cyanophycin synthetase [Rhodoferax ferrireducens T118]
 gi|89344845|gb|ABD69048.1| Cyanophycin synthetase [Rhodoferax ferrireducens T118]
          Length = 858

 Score = 37.7 bits (86), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 29/109 (26%), Positives = 57/109 (52%), Gaps = 11/109 (10%)

Query: 82  SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL----ISPPYVIKPLKGGS 137
           +G +A A++ DK  +K+++++ GVPV     V+  T +   +    +  P V+KP  G  
Sbjct: 194 TGAIAEAIAQDKQLTKKLLAAAGVPVPLGREVD--TPEDAWMAACEVGLPVVVKPKSGNQ 251

Query: 138 SLGIIV--IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
             G+ V    ++Q   L    +++   GD +L+E+Y+ G +    V+G+
Sbjct: 252 GKGVTVNITSREQ---LTAAYAAAAEFGDDILVERYIPGNDFRLLVVGN 297


>gi|62083577|gb|AAX62510.1| D-alanine:D-lactate ligase [Staphylococcus epidermidis]
          Length = 88

 Score = 37.7 bits (86), Expect = 1.9,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 2/58 (3%)

Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
           P  +KP + GSS G+  +   +   L+    ++  +  ++LIEQ + G E+ C VMG+
Sbjct: 12  PVFVKPARSGSSFGLTKVNGTEE--LNAAIEAAGQYDGKILIEQAISGCEVGCAVMGN 67


>gi|254421594|ref|ZP_05035312.1| cyanophycin synthetase [Synechococcus sp. PCC 7335]
 gi|196189083|gb|EDX84047.1| cyanophycin synthetase [Synechococcus sp. PCC 7335]
          Length = 925

 Score = 37.7 bits (86), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 43/101 (42%), Gaps = 17/101 (16%)

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFTMDSQHLISPPYVIKPLKGG 136
           +HS IL+  L+ DK  +K+++ + G+PV    +V           +L   P V+KPL G 
Sbjct: 207 SHSNILSVELACDKEATKRMLGNAGIPVPKGTVVYSLRELEESLDYLGGYPIVVKPLDGN 266

Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQL--LIEQYVDGI 175
              GI             L  SSW   +    L  Q  DG+
Sbjct: 267 HGRGIT------------LNISSWEQAEAAYDLARQVSDGV 295


>gi|30678473|ref|NP_849583.1| MCCA; methylcrotonoyl-CoA carboxylase [Arabidopsis thaliana]
 gi|20455046|sp|Q42523|MCCA_ARATH RecName: Full=Methylcrotonoyl-CoA carboxylase subunit alpha,
           mitochondrial; Short=MCCase subunit alpha; AltName:
           Full=3-methylcrotonyl-CoA carboxylase 1; AltName:
           Full=3-methylcrotonyl-CoA:carbon dioxide ligase subunit
           alpha; Flags: Precursor
 gi|17979456|gb|AAL50065.1| At1g03090/F10O3_8 [Arabidopsis thaliana]
 gi|332189406|gb|AEE27527.1| methylcrotonoyl-CoA carboxylase subunit alpha [Arabidopsis
           thaliana]
          Length = 734

 Score = 37.7 bits (86), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 40/188 (21%), Positives = 78/188 (41%), Gaps = 23/188 (12%)

Query: 92  DKMRSKQVVSSCGVPVCPSILVNRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKD 147
           DK  SK+++ + GVP+ P    +   +D        I  P +IKP  GG   G+ +++  
Sbjct: 151 DKSASKRIMGAAGVPLVPGYHGHEQDIDHMKSEAEKIGYPIIIKPTHGGGGKGMRIVQSG 210

Query: 148 QSIPLDLL---QSSSWNHG-DQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSY 202
           +      L   + ++ + G + +L+E+Y+     +   + GD   +V  +         Y
Sbjct: 211 KDFADSFLGAQREAAASFGVNTILLEKYITRPRHIEVQIFGDKHGNVLHL---------Y 261

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQR-----LAFLAHQAIGCRGISRSDFLFDPLSRKV 257
           E   S       +  + P     E  R      A  A +A+G       +F+ D  S + 
Sbjct: 262 ERDCSVQRRHQKIIEEAPAPNISEKFRANLGQAAVSAARAVGYYNAGTVEFIVDTESDQF 321

Query: 258 FWLEINVQ 265
           +++E+N +
Sbjct: 322 YFMEMNTR 329


>gi|218245822|ref|YP_002371193.1| cyanophycin synthetase [Cyanothece sp. PCC 8801]
 gi|218166300|gb|ACK65037.1| cyanophycin synthetase [Cyanothece sp. PCC 8801]
          Length = 877

 Score = 37.7 bits (86), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 31/110 (28%), Positives = 47/110 (42%), Gaps = 30/110 (27%)

Query: 82  SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP----PYVIKPLKGGS 137
           SGIL   L+ DK  +K ++   G+PV P     +F  D ++ I      P VIKPL G  
Sbjct: 209 SGILGVELACDKEGTKTMLQDSGIPV-PKGTTIQFFEDLENAIEDVGGFPIVIKPLDGNH 267

Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQ-------------LLIEQYVDG 174
             GI +              +SW+H ++             ++IE+Y  G
Sbjct: 268 GRGITI------------DINSWDHAEEAYDFASKESKTRSVIIERYYKG 305


>gi|308067543|ref|YP_003869148.1| phosphoribosylaminoimidazole carboxylase ATPase subunit (AIR
           carboxylase) (AIRC) [Paenibacillus polymyxa E681]
 gi|305856822|gb|ADM68610.1| Phosphoribosylaminoimidazole carboxylase ATPase subunit (AIR
           carboxylase) (AIRC) [Paenibacillus polymyxa E681]
          Length = 391

 Score = 37.7 bits (86), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 36/159 (22%), Positives = 76/159 (47%), Gaps = 14/159 (8%)

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL--ISPPYVIKPLKGG-SSLGIIVIKK 146
           +  ++R K+ + + GVPV P   ++      Q +  +  P V+K   GG    G +VI++
Sbjct: 110 TQHRLREKRSIEAAGVPVAPYREISSPADIVQAVAELGVPCVLKTAVGGYDGKGQVVIRQ 169

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC--GVMGDASLDVTEIAVPKSDFYSYEL 204
            +       Q +    G +L++EQ+   I   C   V+   S +    A P ++     +
Sbjct: 170 PEEATAAYEQLAGG--GVELVLEQF---IRFRCEISVIVARSTNGEAKAFPPAE----NI 220

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
             +++  T ++PA++P  + +E ++LA    +++G  G+
Sbjct: 221 HVNNILHTSIVPARVPEPVQEEARKLALAVAESLGAVGL 259


>gi|121611887|ref|YP_999694.1| cyanophycin synthetase [Verminephrobacter eiseniae EF01-2]
 gi|121556527|gb|ABM60676.1| cyanophycin synthetase [Verminephrobacter eiseniae EF01-2]
          Length = 741

 Score = 37.7 bits (86), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 27/105 (25%), Positives = 51/105 (48%), Gaps = 9/105 (8%)

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGII 142
           +A  ++ DK  +K +++SCG+P+    LV+       +   I  P V+KP  G    G+ 
Sbjct: 213 IAEGIASDKELTKGLLASCGLPIPEGRLVHSPEQAWQAAQDIGLPVVLKPSDGNHGRGVT 272

Query: 143 V---IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
           +    ++D      L +      G Q+++E+++ G E    V+GD
Sbjct: 273 LDLHSRQDIEAAYRLAEPE----GSQVMVERFIAGAEHRLLVVGD 313


>gi|154149224|ref|YP_001406712.1| biotin carboxylase (Acetyl-CoA carboxylase subunit A) (ACC)
           [Campylobacter hominis ATCC BAA-381]
 gi|153805233|gb|ABS52240.1| biotin carboxylase (Acetyl-CoA carboxylase subunit A) (ACC)
           [Campylobacter hominis ATCC BAA-381]
          Length = 337

 Score = 37.7 bits (86), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 48/192 (25%), Positives = 94/192 (48%), Gaps = 17/192 (8%)

Query: 85  LASALSMDKMRSKQVVSSCGVPVCP-SILVNRFTMDSQHLISP---PYVIKPLKGGSSLG 140
           ++ AL  DK ++K  +   GVPV P S  V +   +++ L +    P ++K   GG   G
Sbjct: 1   MSMALMSDKSKAKSFMKRAGVPVIPGSDGVLKDVEEARKLANEMGYPVILKAAAGGGGRG 60

Query: 141 IIVIKKDQSIPLDLLQS-----SSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAV 194
           + ++ K + +  +   +     S++ +G  + IE+Y+     +   ++GD   +V  I V
Sbjct: 61  MRLVTKGEDLEKNFWAAESEALSAFGNG-SMYIEKYITNPRHVEVQILGDEHGNV--IHV 117

Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE-VQRLAFLAHQAIGCRGISRSDFLFDPL 253
            + D  S + ++  L      PA I  +  +E +   A  A +AIG  G    +FL+D  
Sbjct: 118 GERDC-SMQRRHQKL--IEETPATILDEKTREKLHETAIAATKAIGYYGAGTFEFLYDQD 174

Query: 254 SRKVFWLEINVQ 265
           S++ +++E+N +
Sbjct: 175 SKEFYFIEMNTR 186


>gi|330883008|gb|EGH17157.1| hypothetical protein Pgy4_29620 [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 316

 Score = 37.7 bits (86), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 48/104 (46%), Gaps = 14/104 (13%)

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSI--LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
           +AL+ DK   +Q  ++ G+   P    + N   +   H +  P VIKPL G SS G+++ 
Sbjct: 97  AALTRDKYLMRQAFAAAGL-RSPGFCYIDNPEDLSQAHALGFPLVIKPLSGWSSTGVMLA 155

Query: 145 KKDQSIP-----------LDLLQSSSWNHGDQLLIEQYVDGIEL 177
           K  + +P            DL +    +    L++EQY+ G E 
Sbjct: 156 KTVEELPNLVNAVWDVQSKDLARFYDQDKAVGLVVEQYLPGKEF 199


>gi|257095426|ref|YP_003169067.1| cyanophycin synthetase [Candidatus Accumulibacter phosphatis clade
           IIA str. UW-1]
 gi|257047950|gb|ACV37138.1| cyanophycin synthetase [Candidatus Accumulibacter phosphatis clade
           IIA str. UW-1]
          Length = 723

 Score = 37.7 bits (86), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 48/177 (27%), Positives = 77/177 (43%), Gaps = 16/177 (9%)

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVNRF--TMDSQHLISPPYVIKPLKGGSSLGII 142
           +A  +S DK  +K ++ SCGVPV    LV       ++   I  P V+KP  G  + G+ 
Sbjct: 215 IAEGISRDKDLTKTLLQSCGVPVPEGRLVESAEDAWEAAEDIGVPVVVKPSDGNHARGVF 274

Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD--ASLDVTEIAVPKSDFY 200
                ++  ++   +++   G  +++E+YV G E    V+G   A+    EIA    D  
Sbjct: 275 TNLMARA-EVESAYAAAVVEGSGVIVERYVRGSEHRLLVVGGKLAAAARGEIAKVVGDGK 333

Query: 201 SY--ELKYSSLNSTHVLPA--KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
           +   EL    +NS     A  + PLDI         LA   +    +SR  F  D +
Sbjct: 334 ATINELIDQQINSDPRRGAAEEFPLDIID-------LADNPVARLEVSRQGFAPDSI 383


>gi|319780474|ref|YP_004139950.1| hypothetical protein Mesci_0730 [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317166362|gb|ADV09900.1| hypothetical protein Mesci_0730 [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 357

 Score = 37.7 bits (86), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 47/94 (50%), Gaps = 11/94 (11%)

Query: 88  ALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPP-----YVIKPLKGGSSLGII 142
           AL  DK RS  V+ + G+PV  + L      D Q L+ PP     + +KP + G+ +GI 
Sbjct: 120 ALCQDKFRSGAVLGALGLPVPQAGLAR----DGQWLVEPPASPAGWFVKPNRLGAKIGIW 175

Query: 143 VIKK--DQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
              +  D +  L+L +     + D ++++ YV G
Sbjct: 176 PESRCSDLAHALELSRRVFSAYRDDVVVQPYVAG 209


>gi|257058868|ref|YP_003136756.1| cyanophycin synthetase [Cyanothece sp. PCC 8802]
 gi|256589034|gb|ACU99920.1| cyanophycin synthetase [Cyanothece sp. PCC 8802]
          Length = 877

 Score = 37.7 bits (86), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 31/110 (28%), Positives = 47/110 (42%), Gaps = 30/110 (27%)

Query: 82  SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP----PYVIKPLKGGS 137
           SGIL   L+ DK  +K ++   G+PV P     +F  D ++ I      P VIKPL G  
Sbjct: 209 SGILGVELACDKEGTKTMLQDSGIPV-PKGTTIQFFEDLENAIEDVGGFPIVIKPLDGNH 267

Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQ-------------LLIEQYVDG 174
             GI +              +SW+H ++             ++IE+Y  G
Sbjct: 268 GRGITI------------DINSWDHAEEAYDFASKESKTRSVIIERYYKG 305


>gi|330465023|ref|YP_004402766.1| phosphoribosylamine/glycine ligase [Verrucosispora maris AB-18-032]
 gi|328807994|gb|AEB42166.1| phosphoribosylamine/glycine ligase [Verrucosispora maris AB-18-032]
          Length = 388

 Score = 37.7 bits (86), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 33/125 (26%), Positives = 57/125 (45%), Gaps = 10/125 (8%)

Query: 77  IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL--ISPPYVIKPLK 134
           IP       A+ L   K  +K V+++ GVP   +          + L    PPYV+K   
Sbjct: 60  IPVFGPSAEAARLEGSKTFAKDVMTAAGVPTARAYTCTEAEGVGEALDEFGPPYVVKNDG 119

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194
             +  G++V   D+++ L+  Q        +++IE+Y+DG E++  V+ D    V  +  
Sbjct: 120 LAAGKGVVVTD-DRAVALEHAQECG-----RVVIEEYLDGPEVSLFVVTDGEAAVPLL-- 171

Query: 195 PKSDF 199
           P  DF
Sbjct: 172 PAQDF 176


>gi|242240541|ref|YP_002988722.1| siderophore biosynthesis protein [Dickeya dadantii Ech703]
 gi|242132598|gb|ACS86900.1| putative siderophore biosynthesis protein [Dickeya dadantii Ech703]
          Length = 388

 Score = 37.7 bits (86), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 52/98 (53%), Gaps = 8/98 (8%)

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPY--VIKPLKGGSSLGIIVIKKD 147
           + +K R +Q +S+ G+P   S   ++   DS+   S P+  V+KP +G +S+ + ++   
Sbjct: 109 AKEKWRMRQRLSALGLP---STWSSQLLPDSRVEASWPWPLVLKPSQGVASMDVTLMPTP 165

Query: 148 QSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
           Q++   L   +S      LL+EQ++DG   T   +GD 
Sbjct: 166 QALEQFLAPQAS---RATLLLEQFIDGPLFTLETLGDG 200


>gi|149920385|ref|ZP_01908855.1| D-alanine--D-alanine ligase [Plesiocystis pacifica SIR-1]
 gi|149818827|gb|EDM78269.1| D-alanine--D-alanine ligase [Plesiocystis pacifica SIR-1]
          Length = 285

 Score = 37.7 bits (86), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 58/243 (23%), Positives = 104/243 (42%), Gaps = 22/243 (9%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D    V HG  G  G +        +P   +   A A + DK+  +Q +S   +PV  S+
Sbjct: 37  DRLLVVAHGPAGGTGKLHRAARSAGLPVLGAEPQAIATAYDKLLCRQRLSFRNLPVPRSV 96

Query: 112 LVNRFTMDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168
            ++     S   +     P V+KP +G +  G++++      P DL   +S     +LL+
Sbjct: 97  ALSADRAASLRALEQLGWPAVLKPRRGAAGAGVMLLGS----PRDLDALASLE--PELLV 150

Query: 169 EQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY--SSLNSTHVLPAKIPLDIYKE 226
           E+ + G E++  ++  A L + E+        + E+    S L S  V P   P+   + 
Sbjct: 151 ERRMLGREISVVLLDGALLGMAEV--------TREIGPGGSKLRSVTVPPKLDPI-ARRG 201

Query: 227 VQRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285
           +  +A  A + +G   G +  D +  P   +V  LE+   P +   S+   +A   G S+
Sbjct: 202 LANVAVRAARELGLDAGPTCVDLILSPRDNEVI-LEVEPLPPVHRDSLVARVARAEGLSY 260

Query: 286 REL 288
            EL
Sbjct: 261 PEL 263


>gi|318079425|ref|ZP_07986757.1| acetyl/propionyl CoA carboxylase subunit alpha [Streptomyces sp.
           SA3_actF]
          Length = 491

 Score = 37.7 bits (86), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 47/89 (52%), Gaps = 8/89 (8%)

Query: 92  DKMRSKQVVSSCGVPVCP----SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147
           DK+R+K+ V + GVPV P    S L +    D+   I  P ++KP  GG   G+ ++ ++
Sbjct: 120 DKIRAKETVKAAGVPVVPGSSGSGLDDEELADAAREIGMPVLLKPSAGGGGKGMRLVHEE 179

Query: 148 QSIPLDLL----QSSSWNHGDQLLIEQYV 172
             +  ++     ++ S    D LL+E++V
Sbjct: 180 ALLAEEIAAARREARSSFGDDTLLVERWV 208


>gi|307544381|ref|YP_003896860.1| ribosomal protein S6 modification protein [Halomonas elongata DSM
           2581]
 gi|307216405|emb|CBV41675.1| ribosomal protein S6 modification protein [Halomonas elongata DSM
           2581]
          Length = 320

 Score = 37.7 bits (86), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 43/192 (22%), Positives = 89/192 (46%), Gaps = 28/192 (14%)

Query: 90  SMDKMRSKQVVSSCGV--PVC-----PSILVNRFTMDSQHLISPPYVIKPLKGGSSLGII 142
           S DK+RS Q++S  G+  PV      P  + +  TM    +   P VIK L+G   +G++
Sbjct: 115 SRDKLRSLQLLSRKGIGLPVTGFAHSPDDIPDLITM----VRGAPLVIKLLEGTQGIGVV 170

Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYV---DGIELTCGVMGDASLDVTEIAVPKSDF 199
           + + +Q+    ++Q+      + +++++Y+    G ++ C V+GD  +   +    + +F
Sbjct: 171 LAETNQAAE-SVIQAFMGMKAN-IMVQEYIKEAKGADIRCLVIGDKVVAAMKRQAAEGEF 228

Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
            S   +  S +   + P         E +  A  A +A+G + ++  D L    +     
Sbjct: 229 RSNLHRGGSASIIRITP---------EERSTAIRAAKAMGLK-VAGVDLLRS--NHGPVI 276

Query: 260 LEINVQPGMTPV 271
           +E+N  PG+  +
Sbjct: 277 MEVNSSPGLRGI 288


>gi|291519947|emb|CBK75168.1| Biotin carboxylase [Butyrivibrio fibrisolvens 16/4]
          Length = 331

 Score = 37.7 bits (86), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 25/97 (25%), Positives = 48/97 (49%), Gaps = 4/97 (4%)

Query: 92  DKMRSKQVVSSCGVPVCPSILVN-RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150
           DK+R K+     GVPV  +  ++  F+ +    +  P V+KP  G SS+G+ +   ++ +
Sbjct: 105 DKLRFKEECEKFGVPVPKNFKLDMDFSKEDLAAVEYPVVVKPADGCSSIGMHICYNEEEL 164

Query: 151 PLDLLQSSSWNHGDQLLIEQYVDGIE---LTCGVMGD 184
                 +   +   ++++E+Y  G E   L C V G+
Sbjct: 165 IAGYKDAYEKSDAKKVVLEKYYSGEETSLLFCYVDGE 201


>gi|333024692|ref|ZP_08452756.1| putative acetyl/propionyl CoA carboxylase alpha subunit
           [Streptomyces sp. Tu6071]
 gi|332744544|gb|EGJ74985.1| putative acetyl/propionyl CoA carboxylase alpha subunit
           [Streptomyces sp. Tu6071]
          Length = 666

 Score = 37.7 bits (86), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 47/89 (52%), Gaps = 8/89 (8%)

Query: 92  DKMRSKQVVSSCGVPVCP----SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147
           DK+R+K+ V + GVPV P    S L +    D+   I  P ++KP  GG   G+ ++ ++
Sbjct: 120 DKIRAKETVKAAGVPVVPGSSGSGLDDEELADAAREIGMPVLLKPSAGGGGKGMRLVHEE 179

Query: 148 QSIPLDLL----QSSSWNHGDQLLIEQYV 172
             +  ++     ++ S    D LL+E++V
Sbjct: 180 ALLAEEIAAARREARSSFGDDTLLVERWV 208


>gi|318057639|ref|ZP_07976362.1| acetyl/propionyl CoA carboxylase subunit alpha [Streptomyces sp.
           SA3_actG]
          Length = 666

 Score = 37.7 bits (86), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 47/89 (52%), Gaps = 8/89 (8%)

Query: 92  DKMRSKQVVSSCGVPVCP----SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147
           DK+R+K+ V + GVPV P    S L +    D+   I  P ++KP  GG   G+ ++ ++
Sbjct: 120 DKIRAKETVKAAGVPVVPGSSGSGLDDEELADAAREIGMPVLLKPSAGGGGKGMRLVHEE 179

Query: 148 QSIPLDLL----QSSSWNHGDQLLIEQYV 172
             +  ++     ++ S    D LL+E++V
Sbjct: 180 ALLAEEIAAARREARSSFGDDTLLVERWV 208


>gi|282896743|ref|ZP_06304751.1| D-alanylalanine synthetase [Raphidiopsis brookii D9]
 gi|281198461|gb|EFA73349.1| D-alanylalanine synthetase [Raphidiopsis brookii D9]
          Length = 391

 Score = 37.7 bits (86), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 33/125 (26%), Positives = 53/125 (42%), Gaps = 12/125 (9%)

Query: 70  AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-------LVNRFTMDSQH 122
           A+LE+L IPY     L S++   K   K+ + + G+   P +       L +    ++  
Sbjct: 116 ALLEMLGIPYVGHNPLNSSILDQKHIFKRELQTWGINTAPFVTWHPAQGLFDHHRSENFA 175

Query: 123 LISP----PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           +  P    P+V+KP+ G +SL I   K  + +   +       H    LIE Y  G E  
Sbjct: 176 ITFPNYKGPFVVKPVSGRASLNIHFAKNIEDLSAAVANIHHTTHSTA-LIETYFPGREFC 234

Query: 179 CGVMG 183
             V G
Sbjct: 235 VSVCG 239


>gi|77919721|ref|YP_357536.1| acetyl-CoA carboxylase/biotin carboxylase [Pelobacter carbinolicus
           DSM 2380]
 gi|77545804|gb|ABA89366.1| acetyl-CoA carboxylase/biotin carboxylase [Pelobacter carbinolicus
           DSM 2380]
          Length = 445

 Score = 37.7 bits (86), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 4/57 (7%)

Query: 92  DKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP----PYVIKPLKGGSSLGIIVI 144
           DK+R++Q V+  GVP+ P       T+D    I+     P +IK   GG   G+ V+
Sbjct: 115 DKIRARQTVTKAGVPILPGTTEGVGTIDQARQIAEEIGYPVIIKATAGGGGRGMKVV 171


>gi|320589745|gb|EFX02201.1| 3-methylcrotonyl-carboxylase subunit alpha [Grosmannia clavigera
           kw1407]
          Length = 750

 Score = 37.4 bits (85), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 52/247 (21%), Positives = 101/247 (40%), Gaps = 25/247 (10%)

Query: 34  SQIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALS 90
           S +D D+ + L L H         LH  +G   E+           I +      A A  
Sbjct: 86  SYLDGDKIIALALQH-----GIQALHPGYGFLSENAAFAERCAAAGITFVGPPAQAMADM 140

Query: 91  MDKMRSKQVVSSCGVPVCPSI-----LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145
            DK RSK ++ + GVP  P          +  + +   +  P ++K ++GG   G+ +++
Sbjct: 141 GDKARSKAIMLAAGVPCVPGYHGPDQAPEQLAVHAAK-VGYPVLLKSVRGGGGKGMRIVQ 199

Query: 146 KDQSIPLDL------LQSSSWNHGDQLLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSD 198
                   L       ++S  + G+ +L+E+Y V    +   V  D     T +A+ + D
Sbjct: 200 TPDEFEAQLRSARAEARASFGDGGEVMLVERYIVRPRHVEVQVFADKH--GTAVALGERD 257

Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
             S + ++  +      P  +  D+  ++   A  A  A+G  G    +F+ D  + + F
Sbjct: 258 C-SIQRRHQKILEESPAP-DLGDDLRHDLWDRARTAALAVGYVGAGTVEFILDRDTGEFF 315

Query: 259 WLEINVQ 265
           ++E+N +
Sbjct: 316 FMEMNTR 322


>gi|302521668|ref|ZP_07274010.1| acetyl-CoA carboxylase, biotin carboxylase [Streptomyces sp. SPB78]
 gi|302430563|gb|EFL02379.1| acetyl-CoA carboxylase, biotin carboxylase [Streptomyces sp. SPB78]
          Length = 661

 Score = 37.4 bits (85), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 47/89 (52%), Gaps = 8/89 (8%)

Query: 92  DKMRSKQVVSSCGVPVCP----SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147
           DK+R+K+ V + GVPV P    S L +    D+   I  P ++KP  GG   G+ ++ ++
Sbjct: 115 DKIRAKETVKAAGVPVVPGSSGSGLDDEELADAAREIGMPVLLKPSAGGGGKGMRLVHEE 174

Query: 148 QSIPLDLL----QSSSWNHGDQLLIEQYV 172
             +  ++     ++ S    D LL+E++V
Sbjct: 175 ALLAEEIAAARREARSSFGDDTLLVERWV 203


>gi|289423730|ref|ZP_06425526.1| pyruvate carboxylase [Peptostreptococcus anaerobius 653-L]
 gi|289155857|gb|EFD04526.1| pyruvate carboxylase [Peptostreptococcus anaerobius 653-L]
          Length = 1147

 Score = 37.4 bits (85), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 35/183 (19%), Positives = 77/183 (42%), Gaps = 14/183 (7%)

Query: 92  DKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP----PYVIKPLKGGSSLGIIVIKKD 147
           DK+ SK V  +  VP  P +     T+     ++     P ++K   GG   G+ +++++
Sbjct: 119 DKINSKIVAHAANVPTIPGVEKALKTIKEAKEVAAEIGYPVMVKASNGGGGRGMRIVRRE 178

Query: 148 QSIPLDLLQSSSWNHG----DQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSY 202
           + + ++   + S +      D + IE+Y+ D   +   ++GDA  ++  +          
Sbjct: 179 EDLEIEFENARSESRKAFGEDIIFIEKYIEDPKHIEVQILGDAYGNIVHLYERDCSVQRR 238

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
             K         LP +I   I ++  R+A    + +  +     +FL D      +++E+
Sbjct: 239 HQKIIEHAPAFSLPTEIREKICQDAVRIA----KHVNYKSAGTLEFLVDKHGNH-YFIEM 293

Query: 263 NVQ 265
           N +
Sbjct: 294 NTR 296


>gi|119356886|ref|YP_911530.1| carbamoyl-phosphate synthase L chain, ATP-binding [Chlorobium
           phaeobacteroides DSM 266]
 gi|119354235|gb|ABL65106.1| Carbamoyl-phosphate synthase L chain, ATP-binding protein
           [Chlorobium phaeobacteroides DSM 266]
          Length = 485

 Score = 37.4 bits (85), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 41/187 (21%), Positives = 77/187 (41%), Gaps = 20/187 (10%)

Query: 92  DKMRSKQVVSSCGVPVCPSILVNRF-----TMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           DK+ SK++     VP  P I   +      T   +  ++ P +IK   GG   G++ +  
Sbjct: 118 DKIESKKIAKEAKVPTIPGINSPKTAEEIRTWMQEEDVALPIIIKASSGGGGKGMVRVTH 177

Query: 147 DQSIPLDLLQSSSWNH----GDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYS 201
           D  +   L Q+ S        D++L+E++++ G  +   ++ D   +V  +       + 
Sbjct: 178 DSELENALAQARSEAKKSFGNDEILVEKFIEKGRHIEVQIIADQHGNVIHL-------FE 230

Query: 202 YELKYSSLNSTHVLPAKIPL---DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
            E      N   +  A  P    DI + +   A    + IG       +FL D  + K +
Sbjct: 231 RECTLQRRNQKIIEEAPSPSIDDDIRQSICETAVQLMRTIGYSSAGTVEFLLDAATGKFY 290

Query: 259 WLEINVQ 265
           +LE+N +
Sbjct: 291 FLEVNTR 297


>gi|295675037|ref|XP_002798064.1| biotin carboxylase [Paracoccidioides brasiliensis Pb01]
 gi|226280714|gb|EEH36280.1| biotin carboxylase [Paracoccidioides brasiliensis Pb01]
          Length = 666

 Score = 37.4 bits (85), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 25/115 (21%), Positives = 56/115 (48%), Gaps = 14/115 (12%)

Query: 88  ALSMDKMRSKQVVSSCGVPVCPSI--------LVNRFTMDSQHLISPPYVIKPLKGGSSL 139
           A + DK+R+K++  +CGVP+  ++        L+ RF  +    +  P ++K + GG   
Sbjct: 116 AQTGDKLRAKELAEACGVPILKAMKTPTNDIDLIGRFAAE----VGYPVMVKAVDGGGGR 171

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI--ELTCGVMGDASLDVTEI 192
           GI  +K    +   + +++  +   ++ +E+   G    +   V+GD + +V  +
Sbjct: 172 GIRFVKGADELQSAVDRATGESPSKKVFVEKAAVGSFHHVEVQVIGDGTGEVRHL 226


>gi|6164692|gb|AAF04496.1|AF157615_1 acetyl-CoA carboxylase 1 [Plasmodium falciparum]
          Length = 131

 Score = 37.4 bits (85), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 14/48 (29%), Positives = 31/48 (64%)

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
           P+ +P  I++E+++ +    + I  RG    ++L+D +++K F+LE+N
Sbjct: 81  PSVVPYPIFREMEKSSIRLTKMIKYRGAGTIEYLYDQINKKYFFLELN 128


>gi|312132027|ref|YP_003999367.1| phosphoribosylamine/glycine ligase [Leadbetterella byssophila DSM
           17132]
 gi|311908573|gb|ADQ19014.1| phosphoribosylamine/glycine ligase [Leadbetterella byssophila DSM
           17132]
          Length = 430

 Score = 37.4 bits (85), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 76/166 (45%), Gaps = 18/166 (10%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAIL-------ELLEIPYTHSGILASA 88
           +D +   G+  A L+ D+   V+     ED LV  I+       +L  IP        + 
Sbjct: 46  LDANNFEGIKKAVLENDIKLVVVGP---EDPLVNGIVDFFKADKQLKRIPIIGPDAKGAQ 102

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--QHLISP--PYVIKPLKGGSSLGIIV- 143
           L   K  SK+ +   G+P   +      T++    +L +   PYV+K     +  G+I+ 
Sbjct: 103 LEGSKDFSKEFMLKYGIPTAAAETFTPETLEKGLSYLANQKGPYVLKADGLAAGKGVIIT 162

Query: 144 --IKKDQSIPLDLLQSSSWNH-GDQLLIEQYVDGIELTCGVMGDAS 186
             +++ Q+   D+L+   +   G ++L+EQ++ GIEL+  V+ D  
Sbjct: 163 EDLQEAQNTLRDMLEGGKFGKAGSKVLVEQHLKGIELSVFVLSDGK 208


>gi|239979567|ref|ZP_04702091.1| acetyl/propionyl CoA carboxylase alpha subunit [Streptomyces albus
           J1074]
 gi|291451436|ref|ZP_06590826.1| acetyl/propionyl CoA carboxylase alpha subunit [Streptomyces albus
           J1074]
 gi|291354385|gb|EFE81287.1| acetyl/propionyl CoA carboxylase alpha subunit [Streptomyces albus
           J1074]
          Length = 675

 Score = 37.4 bits (85), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 50/96 (52%), Gaps = 8/96 (8%)

Query: 86  ASALSMDKMRSKQVVSSCGVPVCP----SILVNRFTMDSQHLISPPYVIKPLKGGSSLGI 141
           A AL  DK+R+K+ V + GVPV P    S L +     +   I  P ++KP  GG   G+
Sbjct: 109 AIALMGDKIRAKETVRAAGVPVVPGSSGSGLTDAELAAAAREIGMPVLLKPSAGGGGKGM 168

Query: 142 IVIKKDQSIPLDLLQSSSWNHG----DQLLIEQYVD 173
            +++++ ++  ++  +          D LL+E+++D
Sbjct: 169 RLVREEAALAEEIAAARREARASFGDDTLLVERWID 204


>gi|190894038|ref|YP_001984332.1| putative D-alanine-D-alanine ligase protein [Rhizobium etli CIAT
           652]
 gi|190699699|gb|ACE93782.1| putative D-alanine-D-alanine ligase protein [Rhizobium etli CIAT
           652]
          Length = 126

 Score = 37.4 bits (85), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 23/91 (25%), Positives = 47/91 (51%), Gaps = 4/91 (4%)

Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
           FY   LK  S++  H +P  +     + ++      ++ + C+G+ R DF+++       
Sbjct: 21  FYDDRLKQRSVDE-HAIPKILQGPAAERIRDDVLRLYKQLDCKGLVRFDFIYN--DGAPV 77

Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           +LE+N  PG+ P S  P ++  + +SF +L+
Sbjct: 78  YLEVNTIPGLLPESNAP-LSFQSRFSFEDLI 107


>gi|331226946|ref|XP_003326142.1| phosphoribosylformylglycinamidine cyclo-ligase [Puccinia graminis
           f. sp. tritici CRL 75-36-700-3]
 gi|309305132|gb|EFP81723.1| phosphoribosylformylglycinamidine cyclo-ligase [Puccinia graminis
           f. sp. tritici CRL 75-36-700-3]
          Length = 792

 Score = 37.4 bits (85), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 27/124 (21%), Positives = 59/124 (47%), Gaps = 6/124 (4%)

Query: 68  VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPP 127
           ++ +   + +P      LAS +   K  SK  ++   +P       + F +  +HL+S  
Sbjct: 79  IEGLFRKIGVPCFGPSELASKMEGSKAFSKDFMTKHDIPTARYANFSDFELAKKHLLSID 138

Query: 128 Y--VIKPLKGGSSLGIIVIKKDQ----SIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
           Y  VIK     S  G+++ +  Q    ++   +++    + GD+++IE+Y++G E++   
Sbjct: 139 YKVVIKASGLASGKGVLIPENQQEALEALETIMVKKKFGSSGDEVVIEEYLEGQEISVLA 198

Query: 182 MGDA 185
           + D 
Sbjct: 199 LSDG 202


>gi|2116977|dbj|BAA20124.1| D-alanine ligase [Clostridium perfringens]
          Length = 45

 Score = 37.4 bits (85), Expect = 2.6,   Method: Composition-based stats.
 Identities = 18/39 (46%), Positives = 25/39 (64%)

Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           + LE+N  PGMT  S+FP+ AA    SF ELL  ++E +
Sbjct: 1   YVLEVNTLPGMTKNSLFPKSAAGINMSFEELLDTIIEKS 39


>gi|163787199|ref|ZP_02181646.1| S6 modification enzyme RimK [Flavobacteriales bacterium ALC-1]
 gi|159877087|gb|EDP71144.1| S6 modification enzyme RimK [Flavobacteriales bacterium ALC-1]
          Length = 291

 Score = 37.4 bits (85), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 27/109 (24%), Positives = 59/109 (54%), Gaps = 9/109 (8%)

Query: 70  AILELLEIPYTHSGILASAL--SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ----HL 123
           A++   E+    + + + A+  S DK+RS Q +S  G+ +  ++  N ++ D +    H+
Sbjct: 75  AVVRQFEMMNVFTTVTSDAIIRSRDKLRSFQRLSKAGIGMPKTVFTN-YSRDVEEVLEHV 133

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
             PP +IK L+G   LG +V+ + ++    +L++ S     + L+++Y+
Sbjct: 134 GGPPVIIKLLEGTQGLG-VVLAESKNAAESVLEAFSGLQA-RALVQEYI 180


>gi|126657548|ref|ZP_01728704.1| hypothetical protein CY0110_29859 [Cyanothece sp. CCY0110]
 gi|126621252|gb|EAZ91965.1| hypothetical protein CY0110_29859 [Cyanothece sp. CCY0110]
          Length = 872

 Score = 37.4 bits (85), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 34/67 (50%), Gaps = 5/67 (7%)

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP----PYVIKPLKGG 136
           +SGILA  L+ DK  +K ++   GVPV P     +F  + +  I      P VIKPL G 
Sbjct: 208 YSGILAVELACDKEGTKTILQDAGVPV-PKGTTIQFFEELESAIDDVGGYPIVIKPLDGN 266

Query: 137 SSLGIIV 143
              GI +
Sbjct: 267 HGRGITI 273


>gi|258597921|ref|XP_001348838.2| biotin carboxylase subunit of acetyl CoA carboxylase, putative
           [Plasmodium falciparum 3D7]
 gi|255528926|gb|AAN37277.2| biotin carboxylase subunit of acetyl CoA carboxylase, putative
           [Plasmodium falciparum 3D7]
          Length = 3367

 Score = 37.4 bits (85), Expect = 2.7,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 31/48 (64%)

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
           P+ +P  I++E+++ +    + I  RG    ++L+D +++K F+LE+N
Sbjct: 769 PSVVPYPIFREMEKSSIRLTKMIKYRGAGTIEYLYDQINKKYFFLELN 816


>gi|172037152|ref|YP_001803653.1| cyanophycin synthetase [Cyanothece sp. ATCC 51142]
 gi|20138007|sp|Q9KGY4|CPHA_CYAA5 RecName: Full=Cyanophycin synthetase; AltName: Full=Cyanophycin
           synthase
 gi|9739167|gb|AAF97933.1|AF279247_1 cyanophycin synthetase [Cyanothece sp. ATCC 51142]
 gi|171698606|gb|ACB51587.1| cyanophycin synthetase [Cyanothece sp. ATCC 51142]
          Length = 872

 Score = 37.4 bits (85), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 34/68 (50%), Gaps = 5/68 (7%)

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP----PYVIKPLKG 135
            +SGILA  L+ DK  +K ++   GVPV P     +F  + +  I      P VIKPL G
Sbjct: 207 NYSGILAVELACDKEGTKTILQDAGVPV-PRGTTIQFFEELESAIDDVGGYPIVIKPLDG 265

Query: 136 GSSLGIIV 143
               GI +
Sbjct: 266 NHGRGITI 273


>gi|313619829|gb|EFR91419.1| D-alanine--D-alanine ligase [Listeria innocua FSL S4-378]
          Length = 92

 Score = 37.4 bits (85), Expect = 2.8,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 38/75 (50%), Gaps = 1/75 (1%)

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYA 281
           +I ++++  A  A   +   G+ R+DF       ++F  E+N  PG TP S++P +    
Sbjct: 3   EILEQMKEYAVQAFLGLDASGLVRADFFLTE-DNQLFLNEVNTMPGFTPYSMYPLLWQET 61

Query: 282 GYSFRELLLWMVEDA 296
           G  +  L+  +V+ A
Sbjct: 62  GLPYGALIERLVDLA 76


>gi|326431414|gb|EGD76984.1| 3-methylcrotonyl CoA carboxylase [Salpingoeca sp. ATCC 50818]
          Length = 619

 Score = 37.4 bits (85), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 51/198 (25%), Positives = 92/198 (46%), Gaps = 23/198 (11%)

Query: 83  GILASA-LSM-DKMRSKQVVSSCGVPVCPSILVNR----FTMDSQHLISPPYVIKPLKGG 136
           G  ASA LSM  K  SK+++   GVP+            F +D    I  P +IK +KGG
Sbjct: 61  GPPASAILSMGSKSESKEIMEPSGVPIVKGYHGENQDPSFLLDQARDIGFPVLIKAVKGG 120

Query: 137 SS--LGIIVIKKDQSIPLDLLQSSSWNH--GDQLLIEQYVDG-----IELTCGVMGDASL 187
               + +++ +KD    L++ +  S  H   D++LIE+YV       +++     G+A  
Sbjct: 121 GGKGMRVVMQEKDFMENLEMAKGESRKHFSDDRVLIEKYVQRPRHVEVQVFADKYGNA-- 178

Query: 188 DVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
               + + + D  S + ++  +      P   P ++ KE+   A  A  A+G  G    +
Sbjct: 179 ----VYLFERDC-SLQRRHQKIIEEAPAPGLSP-ELRKELGEAAVRAALAVGYVGAGTVE 232

Query: 248 FLFDPLSRKVFWLEINVQ 265
           F+ D  + + F++E+N +
Sbjct: 233 FIMDTTTHEFFFMEMNTR 250


>gi|167749995|ref|ZP_02422122.1| hypothetical protein EUBSIR_00963 [Eubacterium siraeum DSM 15702]
 gi|167657016|gb|EDS01146.1| hypothetical protein EUBSIR_00963 [Eubacterium siraeum DSM 15702]
          Length = 325

 Score = 37.4 bits (85), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 46/192 (23%), Positives = 81/192 (42%), Gaps = 27/192 (14%)

Query: 92  DKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
           DK  +  ++    +P     LV   T D+ +    P V+KP++G  S G++        P
Sbjct: 113 DKFSTNTLLLQNELPAVTDFLV---TADTVYNGEYPCVLKPIRGRGSQGVVKC----DTP 165

Query: 152 LDLLQS-----SSWNHGDQLLIEQYVDGIELTCGVMGDA-SLDVTEIAVPKSDFYSYELK 205
            + +++     +S  +GD ++ E+Y+ G E+T  V  D  SL   E    K+    Y   
Sbjct: 166 EEFIKARDEAFASGRYGDTMMAEEYLGGTEVTLTVFPDGTSLPFIERFDQKNGIAPYNGD 225

Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLA--FLAHQA---IGCRGISRSDFLFDPLSRKVFWL 260
              + ++ V+     L   ++   LA   L  +A   I CR     +F       K+F  
Sbjct: 226 VPVVKNSRVIEDTPQLTALRKSCELAVWLLGLKAVVRIDCRADKNGNF-------KMF-- 276

Query: 261 EINVQPGMTPVS 272
           + N +P +T  S
Sbjct: 277 DFNPKPNLTGAS 288


>gi|120437606|ref|YP_863292.1| phosphoribosylamine--glycine ligase [Gramella forsetii KT0803]
 gi|117579756|emb|CAL68225.1| phosphoribosylamine--glycine ligase [Gramella forsetii KT0803]
          Length = 423

 Score = 37.4 bits (85), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 34/139 (24%), Positives = 63/139 (45%), Gaps = 20/139 (14%)

Query: 64  EDGLVQAILE-------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116
           ED LV+ I++       L +I         + L   K R+K+ ++  G+P         F
Sbjct: 71  EDPLVKGIVDYFTNDERLKDIQIIGPSSRGALLEGSKERAKEFMAMHGIPTAA---YESF 127

Query: 117 TMDSQ-------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG---DQL 166
           + +S          + PPYV+K     +  G+++I+  +    +L    S   G    ++
Sbjct: 128 SFESLGAGKNFLETLKPPYVLKADGLAAGKGVLIIEDLEEAKKELENMLSGKFGAASKKV 187

Query: 167 LIEQYVDGIELTCGVMGDA 185
           +IE+++DGIEL+  V+ D 
Sbjct: 188 VIEEFLDGIELSVFVLTDG 206


>gi|46109598|ref|XP_381857.1| hypothetical protein FG01681.1 [Gibberella zeae PH-1]
          Length = 662

 Score = 37.4 bits (85), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 33/107 (30%), Positives = 52/107 (48%), Gaps = 8/107 (7%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +H +S P + KP  G SS  +  +    ++   +    S  HG +L+IE Y DG E+   
Sbjct: 347 RHDLSYPLIAKPCGGWSSEAVYRVDSRDALETAISAIFSSRHGHELVIEPYCDGPEVDVN 406

Query: 181 -VMGDASLDVTEIA--VPKSDFYSYELKYSSLNSTH----VLPAKIP 220
            V+ D  L   E+   +PKS   +   K  SL++ H    V P+K+P
Sbjct: 407 LVLQDGQLLFFEVCDDLPKSADVNGP-KVGSLSTFHELCSVYPSKLP 452


>gi|194333134|ref|YP_002014994.1| acetyl-CoA carboxylase, biotin carboxylase [Prosthecochloris
           aestuarii DSM 271]
 gi|194310952|gb|ACF45347.1| acetyl-CoA carboxylase, biotin carboxylase [Prosthecochloris
           aestuarii DSM 271]
          Length = 448

 Score = 37.4 bits (85), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 12/92 (13%)

Query: 92  DKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147
           DK  +K+ + + GVPV P     +      + +   I  P +IKP  GG   G+ V+ + 
Sbjct: 116 DKNSAKETMIAAGVPVIPGSDGLVRDTAHALKTAEKIGYPVIIKPTAGGGGKGMRVVNEP 175

Query: 148 QSIPLDLLQSSSWNHGDQ------LLIEQYVD 173
           + I   LL  +S N   Q      + IE++V+
Sbjct: 176 EKIQKALL--TSQNEAQQAFGNSGVYIEKFVE 205


>gi|319404296|emb|CBI77889.1| Biotin carboxylase [Bartonella rochalimae ATCC BAA-1498]
          Length = 452

 Score = 37.4 bits (85), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 44/218 (20%), Positives = 91/218 (41%), Gaps = 19/218 (8%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP----SILVN 114
           +G   E+     +LE   I +         +  DK+ +K+   S G+PV P    +I+  
Sbjct: 82  YGFLSENAKFADVLEAHNITFIGPTAAHIRIMGDKIEAKKTAKSLGIPVVPGSDNAIVEE 141

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGDQLLIEQ 170
           +  +   + I  P +IK   GG   G+ V   +Q +         ++S+  + D + IE+
Sbjct: 142 KEALRIANEIGYPVIIKASAGGGGRGMKVAHSEQKLLAAFKTARSEASAAFNDDSVYIEK 201

Query: 171 YVDG---IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227
           Y++    IE+   ++GD + +   +            K      + VL         K++
Sbjct: 202 YLEKPRHIEIQ--IIGDGAGNAIHLGERDCSLQRRHQKVWEEAHSPVLNEA----ERKKI 255

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             +   A   +G RG    +FL++  + + +++E+N +
Sbjct: 256 GNIVANACAKLGYRGAGTIEFLYE--NGEFYFIEMNTR 291


>gi|224085521|ref|XP_002307604.1| predicted protein [Populus trichocarpa]
 gi|222857053|gb|EEE94600.1| predicted protein [Populus trichocarpa]
          Length = 760

 Score = 37.4 bits (85), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 37/186 (19%), Positives = 79/186 (42%), Gaps = 19/186 (10%)

Query: 92  DKMRSKQVVSSCGVPVCPSILVNRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKD 147
           DK  SK+++ + GVP+ P    +   ++        I  P +IKP  GG   G+ +++  
Sbjct: 153 DKSASKRIMGAAGVPLVPGYHGSEQDIELMKSEADKIGYPILIKPTHGGGGKGMRIVQSP 212

Query: 148 QSIPLDLL---QSSSWNHG-DQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSY 202
                  L   + ++ + G + +L+E+Y+     +   + GD   +V  +       Y  
Sbjct: 213 NEFVDSFLGAQREAAASFGINTILLEKYITKPRHIEVQIFGDKHGNVLHL-------YER 265

Query: 203 ELKYSSLNSTHVLPAKIPL---DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
           +      +   +  A  P    D    + + A  A +A+G       +F+ D +S + ++
Sbjct: 266 DCSVQRRHQKIIEEAPAPNVMNDFRSHLGQAAVSAAKAVGYHNAGTVEFIVDTVSGQFYF 325

Query: 260 LEINVQ 265
           +E+N +
Sbjct: 326 MEMNTR 331


>gi|159471359|ref|XP_001693824.1| predicted protein [Chlamydomonas reinhardtii]
 gi|158283327|gb|EDP09078.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 440

 Score = 37.4 bits (85), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 47/218 (21%), Positives = 86/218 (39%), Gaps = 22/218 (10%)

Query: 67  LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---FTMDSQHL 123
           L   + E L +P      + +A   DK  ++++++  G+P      V         + H 
Sbjct: 110 LASRLAEALGLPSNTPQAVDNA--RDKHATREIMAKAGLPTPRHWKVTSEADVPKAAAH- 166

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI---------EQYVDG 174
           +  P VIKP+ G +SLG+I    ++ +           H   +++           Y+DG
Sbjct: 167 VGFPAVIKPISGAASLGVIRANNEEDLMKAFKNREGSAHAPDVVVWGRVCGSIRGAYLDG 226

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
            E+ C ++ D    V                 +  N   VLP    +D+ +    L+  A
Sbjct: 227 AEVDCDLIFDNGRPVYGAITDNWPTVEPYFNETGSNCPSVLPKAAQIDLME----LSVRA 282

Query: 235 HQAIGCR-GISRSDFLFDPLSRKVFWLEINVQPGMTPV 271
            Q++G + G+   +  F   SR    +E+N + G  PV
Sbjct: 283 VQSLGFKLGVFHVECKF--TSRGARLIEVNCRMGGGPV 318


>gi|257064138|ref|YP_003143810.1| carbamoylphosphate synthase large subunit [Slackia
           heliotrinireducens DSM 20476]
 gi|256791791|gb|ACV22461.1| carbamoylphosphate synthase large subunit [Slackia
           heliotrinireducens DSM 20476]
          Length = 423

 Score = 37.4 bits (85), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 23/92 (25%), Positives = 45/92 (48%), Gaps = 1/92 (1%)

Query: 88  ALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-DSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           A   DK   K +    G+P   S+ V++ T+ D    I+ P V KP+    S G+ V+  
Sbjct: 105 AYVRDKTLMKGMFDELGIPHAKSVQVHKDTLEDDLSGITFPCVTKPVDSYGSRGVYVLDT 164

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            + +     +  ++++   +++E+YV G E+ 
Sbjct: 165 AEEVRECFDEVEAYSNRGYIIVEEYVQGDEIN 196


>gi|46138797|ref|XP_391089.1| hypothetical protein FG10913.1 [Gibberella zeae PH-1]
          Length = 1834

 Score = 37.4 bits (85), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 36/182 (19%), Positives = 82/182 (45%), Gaps = 13/182 (7%)

Query: 93  KMRSKQVVSSCGVPVCP--SILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQ 148
           K R++ +    GVPV P   +L+   +  +   + I  P ++K   GG  +G+   K  +
Sbjct: 757 KHRARSIAVKVGVPVIPGCEMLLESLKEAILESNKIGFPLMLKSTAGGGGIGLSYCKDVE 816

Query: 149 --SIPLDLLQSSS-WNHGDQ-LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYE 203
             S   +++Q  +  N GD  + +E+Y++    +   ++GD +  V              
Sbjct: 817 GLSATFEVVQRQAVANFGDGGVFLERYIERARHVEIQILGDGTGRVVSAGERDCSLQRRH 876

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            K    +   ++P  +  ++ +   RLA     ++  R +   +F++D  +++ ++LE+N
Sbjct: 877 QKIVEESPAGMIPKSVRTEMKEAALRLA----SSVRYRNVGTVEFIYDLDTKEYYFLEVN 932

Query: 264 VQ 265
            +
Sbjct: 933 TR 934


>gi|54027012|ref|YP_121254.1| putative acetyl-CoA carboxylase subunit alpha [Nocardia farcinica
           IFM 10152]
 gi|54018520|dbj|BAD59890.1| putative acetyl-CoA carboxylase alpha subunit [Nocardia farcinica
           IFM 10152]
          Length = 694

 Score = 37.4 bits (85), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 8/89 (8%)

Query: 92  DKMRSKQVVSSCGVPVCPSILVNRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKD 147
           DK+ +K  VS+ GVPV P I     + D    +   +  P ++KP  GG   G+  +   
Sbjct: 122 DKIAAKNTVSAFGVPVVPGIAEPGLSDDDLIAAAAEVGYPVLVKPSAGGGGKGMRRVDDP 181

Query: 148 QSIPLDLL----QSSSWNHGDQLLIEQYV 172
             +P  L+    ++ +    D L +E++V
Sbjct: 182 ADLPAALVSARREAGAAFGDDTLFLERFV 210


>gi|330720002|gb|EGG98446.1| Ribosomal protein S6 glutaminyl transferase [gamma proteobacterium
           IMCC2047]
          Length = 303

 Score = 37.4 bits (85), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 43/191 (22%), Positives = 84/191 (43%), Gaps = 22/191 (11%)

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI----SPPYVIKPLKGGSSLG 140
           +A + S DK+RS Q++S  GV + P+        D   LI      P VIK L+G   +G
Sbjct: 94  VAISRSRDKLRSLQLLSRRGVGI-PATAFAHSPDDIHGLIREVGGAPCVIKLLEGTQGIG 152

Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD---GIELTCGVMGDASLDVTEIAVPKS 197
           +++ +  ++   + +  +       +L+++++    G ++ C V+G   +   +   P+ 
Sbjct: 153 VVLAETRKA--AESVIQAFMGLKTNILVQEFIKEAGGADIRCFVVGGKVIAAMQRQAPEG 210

Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
           +F S   +  S     + PA+         +R A  A + +G   +   D L     R  
Sbjct: 211 EFRSNIHRGGSAKLVRITPAE---------RRTAVNAAKVMGL-NVCGVDLLRS--ERGP 258

Query: 258 FWLEINVQPGM 268
             +E+N  PG+
Sbjct: 259 LVMEVNSSPGL 269


>gi|254416325|ref|ZP_05030078.1| cyanophycin synthetase [Microcoleus chthonoplastes PCC 7420]
 gi|196176763|gb|EDX71774.1| cyanophycin synthetase [Microcoleus chthonoplastes PCC 7420]
          Length = 869

 Score = 37.0 bits (84), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 35/66 (53%), Gaps = 3/66 (4%)

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF-TMDS--QHLISPPYVIKPLKGGS 137
           +SGIL   L+ DK  +KQ++   GVPV     V     +DS  +++   P VIKPL G  
Sbjct: 184 YSGILGVELACDKEGTKQILLDAGVPVPRGTTVLYLDELDSAIEYVGGYPIVIKPLDGNH 243

Query: 138 SLGIIV 143
             GI +
Sbjct: 244 GRGITI 249


>gi|114331392|ref|YP_747614.1| cyanophycin synthetase [Nitrosomonas eutropha C91]
 gi|114308406|gb|ABI59649.1| cyanophycin synthetase [Nitrosomonas eutropha C91]
          Length = 765

 Score = 37.0 bits (84), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 29/105 (27%), Positives = 49/105 (46%), Gaps = 11/105 (10%)

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIKPLKGGSS 138
           +A ++S DK  +K ++ +CG+PV P     R   D          I  P V+KP  G   
Sbjct: 226 IAESISRDKELTKSLLRACGIPV-PE---GRIVTDPADAWLAAADIGLPVVVKPSDGNHG 281

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
            G+  I+      ++   S +   G  +L+E+Y+ GIE    ++G
Sbjct: 282 RGVF-IELSTREEIESAFSIAQQEGSDVLVERYISGIEHRLLIVG 325


>gi|126172754|ref|YP_001048903.1| alpha-L-glutamate ligase [Shewanella baltica OS155]
 gi|153002325|ref|YP_001368006.1| alpha-L-glutamate ligase [Shewanella baltica OS185]
 gi|217974913|ref|YP_002359664.1| RimK family alpha-L-glutamate ligase [Shewanella baltica OS223]
 gi|304410862|ref|ZP_07392479.1| alpha-L-glutamate ligase, RimK family [Shewanella baltica OS183]
 gi|307304967|ref|ZP_07584717.1| alpha-L-glutamate ligase, RimK family [Shewanella baltica BA175]
 gi|190360194|sp|A6WT04|RIMK2_SHEB8 RecName: Full=Ribosomal protein S6 modification protein 2
 gi|190360201|sp|A3CZX1|RIMK1_SHEB5 RecName: Full=Ribosomal protein S6 modification protein 1
 gi|125995959|gb|ABN60034.1| alpha-L-glutamate ligases, RimK family [Shewanella baltica OS155]
 gi|151366943|gb|ABS09943.1| alpha-L-glutamate ligase, RimK family [Shewanella baltica OS185]
 gi|217500048|gb|ACK48241.1| alpha-L-glutamate ligase, RimK family [Shewanella baltica OS223]
 gi|304350759|gb|EFM15160.1| alpha-L-glutamate ligase, RimK family [Shewanella baltica OS183]
 gi|306912369|gb|EFN42793.1| alpha-L-glutamate ligase, RimK family [Shewanella baltica BA175]
          Length = 301

 Score = 37.0 bits (84), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 45/197 (22%), Positives = 92/197 (46%), Gaps = 22/197 (11%)

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLK 134
           Y  +  ++ A S DK+R+ Q++S  G+ +  +   N+   D   LI+     P VIK L+
Sbjct: 86  YAANDSISIARSRDKLRALQLLSRKGIGMPVTGFANKPN-DIPDLINMVGGAPLVIKLLE 144

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV---DGIELTCGVMGDASLDVTE 191
           G   +G+++ +   +   + +  +       +L+++Y+   +G ++ C V+GD  +   +
Sbjct: 145 GTQGIGVVLAETKTA--AESVIEAFLGLKANILVQEYIKESNGSDIRCFVVGDKVIASMK 202

Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
              P+ DF S         + H+      + I    +++A  A +A+G   ++  D L  
Sbjct: 203 RQGPEGDFRS---------NLHLGGCGEVVKITAVERKMAIAAVKAMGLV-VAGVDILRS 252

Query: 252 PLSRKVFWLEINVQPGM 268
             +R    LE+N  PG+
Sbjct: 253 --NRGPLILEVNSAPGI 267


>gi|145237730|ref|XP_001391512.1| 3-methylcrotonyl-CoA carboxylase subunit alpha (MccA) [Aspergillus
           niger CBS 513.88]
 gi|134075986|emb|CAK48180.1| unnamed protein product [Aspergillus niger]
          Length = 709

 Score = 37.0 bits (84), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 43/183 (23%), Positives = 75/183 (40%), Gaps = 13/183 (7%)

Query: 92  DKMRSKQVVSSCGVPVCPSILVNR----FTMDSQHLISPPYVIKPLKGGSS--LGIIVIK 145
           DK +SK+++++ GVP  P    +     F       I  P +IK +KGG    + I   K
Sbjct: 149 DKSQSKKIMTAAGVPCVPGYHGDNQDVNFLEAEADKIKYPVLIKAIKGGGGKGMRIAHTK 208

Query: 146 KDQSIPLDLLQSSSWNH--GDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSY 202
            D    L   +S + N    D +L+E+Y+     +   V  D   +   +          
Sbjct: 209 ADFQAQLQSAKSEAMNSFGDDHVLVEKYITTPRHIEVQVFADKQGNAVALGERDCSIQRR 268

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
             K    +    LP     DI+ + +  A     A+G  G    +F+FD  + + F++E+
Sbjct: 269 HQKILEESPAPHLPDATRKDIWAKARSAAL----AVGYEGAGTVEFIFDNDTGEFFFMEM 324

Query: 263 NVQ 265
           N +
Sbjct: 325 NTR 327


>gi|307635125|gb|ADN78405.1| carbamoyl-phosphate synthase-like protein [Geobacter sulfurreducens
           KN400]
          Length = 326

 Score = 37.0 bits (84), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 23/97 (23%), Positives = 50/97 (51%), Gaps = 7/97 (7%)

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQ 148
           ++ DK ++ Q + + G+   PS L N ++     L  PP ++KP  G  S GI++++ ++
Sbjct: 115 IAKDKWKTVQTLITHGIEPIPSTLSNEWSDCVTLLGPPPLIMKPRHGNGSRGIVILENER 174

Query: 149 SIPLDLLQSSSWNHGDQLLIEQYVDGI--ELTCGVMG 183
               +  +S +     ++++++ V  +  E T  V G
Sbjct: 175 D--FNYWKSKT---NQEVMVQRIVSSMDEEYTVAVFG 206


>gi|220913928|ref|YP_002489237.1| phosphoribosylamine--glycine ligase [Arthrobacter chlorophenolicus
           A6]
 gi|219860806|gb|ACL41148.1| phosphoribosylamine/glycine ligase [Arthrobacter chlorophenolicus
           A6]
          Length = 438

 Score = 37.0 bits (84), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 57/243 (23%), Positives = 95/243 (39%), Gaps = 29/243 (11%)

Query: 77  IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL--ISPPYVIKPLK 134
           IP       A+ L   K  +K++++  GVP   +++       +  L     PYV+K   
Sbjct: 87  IPVFGPSKAAAQLEASKAFAKEIMAEAGVPTAMALVATTAEEAASALDTFGAPYVVKDDG 146

Query: 135 GGSSLGIIVIK-KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
             +  G++V + +D+++       S ++ G  ++IE+++DG E++  V+ D    V    
Sbjct: 147 LAAGKGVVVTRNRDEAL---AHAQSCFDAGGSVVIEEFLDGPEVSLFVLCDGHNTVA--L 201

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE------VQRLAFLAHQAIGCRGISRSD 247
            P  DF           +T  + A  PL+   E      + R+A      +  RG     
Sbjct: 202 SPAQDFKRI-FDNDEGPNTGGMGAYTPLEWAPEGLVQEVIDRVAQPTVNEMARRGTPFVG 260

Query: 248 FLFDPL---SRKVFWLEINVQPG-----------MTPVSIFPEMAAYAGYSFRELLLWMV 293
            LF  L   SR    +E NV+ G            TP+      AA       E L W  
Sbjct: 261 VLFVGLALTSRGTRVIEFNVRFGDPETQAVLARLKTPLGSLLLSAAKGELDTAEELRWAK 320

Query: 294 EDA 296
           E A
Sbjct: 321 ETA 323


>gi|302775638|ref|XP_002971236.1| hypothetical protein SELMODRAFT_411779 [Selaginella moellendorffii]
 gi|300161218|gb|EFJ27834.1| hypothetical protein SELMODRAFT_411779 [Selaginella moellendorffii]
          Length = 636

 Score = 37.0 bits (84), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 46/195 (23%), Positives = 83/195 (42%), Gaps = 28/195 (14%)

Query: 83  GILASALSM--DKMRSKQVVSSCGVPVCPSI----LVNRFTMDSQHLISPPYVIKPLKGG 136
           G  A+A+S+  DK  SK+++S   VPV P        +         I  P +IKP+ GG
Sbjct: 139 GPSAAAISLMGDKSASKKLMSGANVPVVPGYHGDDQSHELLQSEADRIGYPVLIKPVLGG 198

Query: 137 SSLGIIVIKKDQSIPLDLLQS----SSWNHGD-QLLIEQYV-DGIELTCGVMGDASLDVT 190
              G+ ++       LD L+S    S+   GD ++LIE+Y+     +   + GD   +V 
Sbjct: 199 GGKGMRIVHSRDEF-LDSLRSALRESAAAFGDTRVLIEKYIAQPRHIEVQIFGDRFGNVV 257

Query: 191 EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
            +         +E   S       +  + P  +  +  R       +IG   ++ + F+ 
Sbjct: 258 HL---------FERDCSVQRRHQKIIEEAPAPLMSDDFR------NSIGQAAVNAAKFIV 302

Query: 251 DPLSRKVFWLEINVQ 265
           D  +   F++E+N +
Sbjct: 303 DTATGDFFFMEMNTR 317


>gi|224438204|ref|ZP_03659139.1| phosphoribosylamine--glycine ligase [Helicobacter cinaedi CCUG
           18818]
 gi|313144649|ref|ZP_07806842.1| GAR synthetase PurD [Helicobacter cinaedi CCUG 18818]
 gi|313129680|gb|EFR47297.1| GAR synthetase PurD [Helicobacter cinaedi CCUG 18818]
          Length = 426

 Score = 37.0 bits (84), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 30/107 (28%), Positives = 54/107 (50%), Gaps = 8/107 (7%)

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ--HLISPPYVIKP--LKGGSSLGI 141
           AS L   K   K +VS  G+     +  N     S+  H ++PP V+K   L  G  + +
Sbjct: 96  ASRLESSKAYMKDLVSQAGIKTAKYMQSNDINALSEFIHTLTPPIVVKADGLCAGKGV-V 154

Query: 142 IVIKKDQSIP--LDLLQSSSW-NHGDQLLIEQYVDGIELTCGVMGDA 185
           I +  +++I    ++L   ++ N G +++IE+Y+DG EL+   + D 
Sbjct: 155 IALSHNEAIAHTKEMLSGKAFGNAGMRVVIEEYLDGYELSVFAVSDG 201


>gi|58045578|gb|AAW65097.1| vancomycin resistance protein [Enterococcus casseliflavus]
          Length = 93

 Score = 37.0 bits (84), Expect = 3.4,   Method: Composition-based stats.
 Identities = 23/87 (26%), Positives = 45/87 (51%), Gaps = 4/87 (4%)

Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186
           P   KP + GSS GI  +   + I   L    ++ +   +L+++ + G+E+ CG++G+ S
Sbjct: 9   PVFFKPNEAGSSKGITKVTCVEEIAPAL--KEAFAYCSAVLLQKNIAGVEIGCGILGNDS 66

Query: 187 LDVTEIAVPK--SDFYSYELKYSSLNS 211
           L V         + F+ +E KY  +++
Sbjct: 67  LTVGACDAISLVNGFFDFEEKYQLISA 93


>gi|85706530|ref|ZP_01037623.1| acetyl/propionyl CoA carboxylase alpha subunit [Roseovarius sp.
           217]
 gi|85668942|gb|EAQ23810.1| acetyl/propionyl CoA carboxylase alpha subunit [Roseovarius sp.
           217]
          Length = 672

 Score = 37.0 bits (84), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 35/171 (20%), Positives = 70/171 (40%), Gaps = 13/171 (7%)

Query: 104 GVPVCPSIL----VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
           GVPV P        +   +     +  P+++K   GG   G+ ++      P  +  + +
Sbjct: 132 GVPVLPGYRGADQSDARLLQEAKALGTPFLVKASAGGGGRGMRLVTDMADAPEAIASARA 191

Query: 160 WNHG----DQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHV 214
              G      + +E+Y      +   V+GD +  V  +        S +  +  L     
Sbjct: 192 EAQGAFGDPAVFLERYAPRARHVEVQVLGDTNGTVLHLG---DRDCSLQRNHQKLIEEAP 248

Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            P  +P D+ ++++  A    QAIG R     ++L+DP   + ++LE+N +
Sbjct: 249 AP-DLPDDLREDMRAAAVRLAQAIGYRSAGTVEYLYDPEHAEYYFLEMNTR 298


>gi|311070461|ref|YP_003975384.1| hypothetical protein BATR1942_17680 [Bacillus atrophaeus 1942]
 gi|310870978|gb|ADP34453.1| hypothetical protein BATR1942_17680 [Bacillus atrophaeus 1942]
          Length = 416

 Score = 37.0 bits (84), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 55/258 (21%), Positives = 103/258 (39%), Gaps = 46/258 (17%)

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
           ED     +L L E     +   A  L +  + S QV++ C        ++ R  +++   
Sbjct: 72  EDDHFDGVLTLFEPALNFTAKAAEELGLRHLPS-QVIAICRNKYATRQVLKRHQLNTPFF 130

Query: 124 -------------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD------ 164
                        +  P V+KP+ G SS G++ +     +   + +  + N GD      
Sbjct: 131 YEISSAADIDAGGLRYPLVVKPINGFSSQGVVRVNDQDQLKEAISKVEAINQGDLGKFIQ 190

Query: 165 ---QLLIEQYVDGIELTCGVMG-DASLDVTEIAVP---KSDFYSYELKYSSLNSTHVLPA 217
               +++EQ++DG E     M     + V  I      K  F+            ++ PA
Sbjct: 191 GNSGIIVEQFIDGPEFVIETMSIQGKVHVLSIGYKGDCKGPFFE--------EGVYIAPA 242

Query: 218 KIP----LDIYKEVQRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
           ++     L I +EV++    A  A+G   G + ++   D  S K F +E+  + G + +S
Sbjct: 243 RLEEESRLAITEEVRK----AVSALGIDNGAAHTELRLDQ-SGKPFVIEVAPRIGGSGIS 297

Query: 273 IFPEMAAYAGYSFRELLL 290
            F  +    G +F EL++
Sbjct: 298 HFI-VKESTGVNFMELII 314


>gi|302037782|ref|YP_003798104.1| acetyl-Coa carboxylase, biotin carboxylase [Candidatus Nitrospira
           defluvii]
 gi|300605846|emb|CBK42179.1| Acetyl-CoA carboxylase, biotin carboxylase [Candidatus Nitrospira
           defluvii]
          Length = 449

 Score = 37.0 bits (84), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 43/187 (22%), Positives = 84/187 (44%), Gaps = 14/187 (7%)

Query: 88  ALSMDKMRSKQVVSSCGVPVCP----SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIV 143
           AL  DK ++++VV+  G+PV P     +   +   ++   I  P +IK   GG   G+ V
Sbjct: 111 ALMGDKSKAREVVAKKGLPVTPGSPGELRSEQDAQEAAKTIGFPVIIKASAGGGGRGMRV 170

Query: 144 IKKDQSIPLDLLQS-----SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD 198
           + K + +      +     S++ H    L   +++   +   ++ D    V  +   + D
Sbjct: 171 VNKPEELARAFQAAQAEAKSTFGHDGVYLERYFLEPRHIEVQIVADNRGHVVHLG--ERD 228

Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
             S + ++  L      PA I  ++ +E+ R+A  A +AI    +   +FL D   R  F
Sbjct: 229 -CSIQRRHQKLVEETPSPA-IDEELRREIGRVAVQAVKAIRYCNVGTVEFLLDK-DRNFF 285

Query: 259 WLEINVQ 265
           ++E+N +
Sbjct: 286 FMEVNTR 292


>gi|22299713|ref|NP_682960.1| cyanophycin synthetase [Thermosynechococcus elongatus BP-1]
 gi|10047072|emb|CAC07987.1| cyanphycin synthetase [Synechococcus elongatus]
 gi|22295897|dbj|BAC09722.1| cyanophycin synthetase [Thermosynechococcus elongatus BP-1]
          Length = 896

 Score = 37.0 bits (84), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 33/66 (50%), Gaps = 5/66 (7%)

Query: 82  SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP----PYVIKPLKGGS 137
           S ILA  L+ DK  +K+++   G+PV P   V R+  D    I      P VIKPL G  
Sbjct: 209 SSILAVELASDKEGAKRLLQDAGIPV-PKGTVIRYIEDLPEAIEEIGGYPIVIKPLNGNH 267

Query: 138 SLGIIV 143
             GI +
Sbjct: 268 GRGITI 273


>gi|332798387|ref|YP_004459886.1| phosphoribosylaminoimidazole carboxylase, ATPase subunit
           [Tepidanaerobacter sp. Re1]
 gi|332696122|gb|AEE90579.1| phosphoribosylaminoimidazole carboxylase, ATPase subunit
           [Tepidanaerobacter sp. Re1]
          Length = 380

 Score = 37.0 bits (84), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 73/176 (41%), Gaps = 13/176 (7%)

Query: 92  DKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGG-SSLGIIVIKKDQSI 150
           DK + KQ++   G+P    ++VN    D+      P V K  KGG    G+ VI+K + I
Sbjct: 105 DKSKQKQMLDKNGIPTARWVMVNDDLSDAIENFGLPAVQKACKGGYDGRGVYVIEKPEDI 164

Query: 151 PLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLN 210
                  S+    D  L E      EL   V  + + ++    V +  F     + +++ 
Sbjct: 165 -------SNALKCDSFLEELIPIEKELAVMVARNTNKEIKCYPVVEMTFD----QRANIC 213

Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
              V PA+I   I K+   LA    +A+   GI   +    P  +KV   EI  +P
Sbjct: 214 DNTVAPARIEESIKKQALDLAMRCVEALDGVGIFGIEMFLTP-DKKVLVNEIAPRP 268


>gi|160877049|ref|YP_001556365.1| alpha-L-glutamate ligase [Shewanella baltica OS195]
 gi|190360195|sp|A9L4I9|RIMK2_SHEB9 RecName: Full=Ribosomal protein S6 modification protein 2
 gi|160862571|gb|ABX51105.1| alpha-L-glutamate ligase, RimK family [Shewanella baltica OS195]
 gi|315269253|gb|ADT96106.1| alpha-L-glutamate ligase, RimK family [Shewanella baltica OS678]
          Length = 301

 Score = 37.0 bits (84), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 45/197 (22%), Positives = 91/197 (46%), Gaps = 22/197 (11%)

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLK 134
           Y  +  ++ A S DK+R+ Q++S  G+ +  +   N+   D   LI+     P VIK L+
Sbjct: 86  YAANDSISIARSRDKLRALQLLSRKGIGMPVTGFANKPN-DIPDLINMVGGAPLVIKLLE 144

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV---DGIELTCGVMGDASLDVTE 191
           G   +G+++   +     + +  +       +L+++Y+   +G ++ C V+GD  +   +
Sbjct: 145 GTQGIGVVL--AETKTAAESVIEAFLGLKANILVQEYIKESNGSDIRCFVVGDKVIASMK 202

Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
              P+ DF S         + H+      + I    +++A  A +A+G   ++  D L  
Sbjct: 203 RQGPEGDFRS---------NLHLGGCGEVVKITAVERKMAIAAVKAMGLV-VAGVDILRS 252

Query: 252 PLSRKVFWLEINVQPGM 268
             +R    LE+N  PG+
Sbjct: 253 --NRGPLILEVNSAPGI 267


>gi|121534866|ref|ZP_01666685.1| cyanophycin synthetase [Thermosinus carboxydivorans Nor1]
 gi|121306465|gb|EAX47388.1| cyanophycin synthetase [Thermosinus carboxydivorans Nor1]
          Length = 885

 Score = 37.0 bits (84), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 22/96 (22%), Positives = 49/96 (51%), Gaps = 3/96 (3%)

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF--TMDSQHLISPPYVIKPLKGGSS 138
            + ++A  L+ DK  +KQV+++ G+ V   ++V      + +      P V+KPL+G   
Sbjct: 203 RTSLVAGDLASDKHLTKQVLAAGGITVPQGVIVTAAGQAVKAWEQFGAPVVLKPLRGNQG 262

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
            G + +    +  ++   + +  H  ++L+E+Y+ G
Sbjct: 263 KG-VTLNVHSAAEVERAFAFAAAHDREVLVEEYIPG 297


>gi|283457375|ref|YP_003361951.1| phosphoribosylamine-glycine ligase [Rothia mucilaginosa DY-18]
 gi|283133366|dbj|BAI64131.1| phosphoribosylamine-glycine ligase [Rothia mucilaginosa DY-18]
          Length = 465

 Score = 37.0 bits (84), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 27/101 (26%), Positives = 50/101 (49%), Gaps = 4/101 (3%)

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL--ISPPYVIKPLKGGSSLGIIV 143
           A+ L   K  +KQV+    VP   + +          L     PYV+K     +  G++V
Sbjct: 134 AAQLEGSKAFAKQVMEEASVPTARAYVAKNAAEAQAALDEFGAPYVVKDDGLAAGKGVVV 193

Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
            + D++  L+  Q+  +N G  ++IE+++DG E++  V+ D
Sbjct: 194 TE-DRAAALEHAQAC-FNAGGTVVIEEFLDGPEVSLFVISD 232


>gi|73542270|ref|YP_296790.1| cyanophycin synthetase [Ralstonia eutropha JMP134]
 gi|72119683|gb|AAZ61946.1| Cyanophycin synthetase [Ralstonia eutropha JMP134]
          Length = 878

 Score = 37.0 bits (84), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 26/103 (25%), Positives = 52/103 (50%), Gaps = 7/103 (6%)

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGII 142
           +A ++S DK  +K ++ SCGVPV    +V       ++   I  P V+KP  G    G+ 
Sbjct: 212 IAESISRDKDLTKSLLESCGVPVPEGRMVESPEDAWEAAEDIGVPVVVKPYDGNHGRGVF 271

Query: 143 --VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
             ++ +++   ++   + +   G  +++E++V G E    V+G
Sbjct: 272 TNLMTREE---VETAYAVAIEEGSGVIVERFVPGNEHRLLVVG 311


>gi|289808020|ref|ZP_06538649.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
          serovar Typhi str. AG3]
          Length = 54

 Score = 37.0 bits (84), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 17/37 (45%), Positives = 25/37 (67%)

Query: 1  MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID 37
          +AVL+GG S+ER+VSL+SG A  + L + G     +D
Sbjct: 5  IAVLLGGTSAERDVSLNSGAAVLAGLREGGIDAHPVD 41


>gi|154148767|ref|YP_001407085.1| biotin carboxylase [Campylobacter hominis ATCC BAA-381]
 gi|153804776|gb|ABS51783.1| acetyl-CoA carboxylase, biotin carboxylase [Campylobacter hominis
           ATCC BAA-381]
          Length = 444

 Score = 37.0 bits (84), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 53/224 (23%), Positives = 91/224 (40%), Gaps = 19/224 (8%)

Query: 51  PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP- 109
           P   F   + NF E      I E   + +      A AL  DK ++K  +   GVPV P 
Sbjct: 81  PGYGFLSENQNFAE------ICEKEGLKFIGPSTSAMALMSDKSKAKAFMKRAGVPVVPG 134

Query: 110 SILVNRFTMDSQHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS---WNHG 163
           S    +   +++ L   I  P ++K   GG   G+ V+ K + +  +   + S      G
Sbjct: 135 SDGALKDVNEAKKLAEEIGYPVILKAAAGGGGRGMRVVNKPEDLEKNFWSAESEALAAFG 194

Query: 164 D-QLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL 221
           D  + IE+Y      +   ++GD   +V  I            K    +   +L  K   
Sbjct: 195 DGTMYIEKYFTSPRHIEVQILGDEHGNVVHIGERDCSLQRRHQKLIEESPAVILDEKT-- 252

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
              +E+  +A  A +AIG       +FL+D   +K +++E+N +
Sbjct: 253 --REELHEVAVKATKAIGYSSAGTFEFLYDRKDKKFYFIEMNTR 294


>gi|188996965|ref|YP_001931216.1| Carbamoyl-phosphate synthase L chain ATP-binding
           [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188932032|gb|ACD66662.1| Carbamoyl-phosphate synthase L chain ATP-binding
           [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 476

 Score = 37.0 bits (84), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 38/189 (20%), Positives = 83/189 (43%), Gaps = 18/189 (9%)

Query: 88  ALSMDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIV 143
           AL  DKM +K+ +   GVP+ P     I   +   +  + I  P ++K   GG   G+ +
Sbjct: 113 ALFGDKMAAKKKMRELGVPILPGSDEPISDMKKAKEIANEIGYPVILKAAYGGGGRGMRI 172

Query: 144 IKKDQSIPLDLLQSSSWNHGDQ------LLIEQYVDG-IELTCGVMGDASLDVTEIAVPK 196
           ++ +     + L  S++N   +      + IE+YV+    +   +M D   +V  +    
Sbjct: 173 VRSESE--FETLFQSAYNEAKKFFGKGDVFIEKYVENPRHIEIQIMADKYGNVVHLGERD 230

Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256
               S + ++  +      P+ +  ++ KE+ R +  A   +G   +   ++L D  +  
Sbjct: 231 C---SIQRRHQKIVEIARSPS-LDEEVKKELYRTSVKAMFKVGYENVGTIEYLVDE-NNN 285

Query: 257 VFWLEINVQ 265
            +++E+N +
Sbjct: 286 FYFIEMNTR 294


>gi|325577885|ref|ZP_08148118.1| ribosomal protein S6 modification protein [Haemophilus
           parainfluenzae ATCC 33392]
 gi|325160315|gb|EGC72442.1| ribosomal protein S6 modification protein [Haemophilus
           parainfluenzae ATCC 33392]
          Length = 299

 Score = 37.0 bits (84), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 42/187 (22%), Positives = 89/187 (47%), Gaps = 25/187 (13%)

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI---SPPYVIKPLKGGSSLGIIVIKK 146
           + DK RS Q++   G+ V PS +++   ++ +  I   + P +IK LKG   +G+I+ ++
Sbjct: 105 ARDKWRSLQMLLEQGIAV-PSSVLSGCEVEPKQTIKQTTSPMIIKTLKGSQGIGVILAER 163

Query: 147 DQSIP--LDLLQSSSWNHGDQLLIEQYVD---GIELTCGVMGDASLDVTEIAVPKSDFYS 201
            QS    L+ L+ ++      +L++ +V+   G ++ C V+GD  +   +      +F +
Sbjct: 164 PQSAVSILETLKDANVP----VLLQDFVEEAKGTDIRCFVIGDKVVATMQRIGQDGEFRA 219

Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
                    + H       + + +E + +A  A +A+G   ++  D +       +  LE
Sbjct: 220 ---------NFHRGGTAEKIKLTEEEKSIAIRATKALGL-AVAGVDLIRS--KEGLLVLE 267

Query: 262 INVQPGM 268
           +N  PG+
Sbjct: 268 VNASPGL 274


>gi|332710439|ref|ZP_08430386.1| carbamoyl-phosphate synthase large subunit [Lyngbya majuscula 3L]
 gi|332350770|gb|EGJ30363.1| carbamoyl-phosphate synthase large subunit [Lyngbya majuscula 3L]
          Length = 1085

 Score = 37.0 bits (84), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 52/184 (28%), Positives = 88/184 (47%), Gaps = 21/184 (11%)

Query: 92  DKMRSKQVVSSCGVPVCPSILVNRFTMD---SQHLISPPYVIKP--LKGGSSLGIIVIKK 146
           D++  K+ +   GV VCPS + N        +Q + S P +I+P    GGS  GI   K+
Sbjct: 128 DRLLFKEAMERIGVGVCPSGIANNLKEAKAIAQKIGSYPLIIRPAFTLGGSGGGIAYNKE 187

Query: 147 D-QSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEI-AVPKSDFYSYE 203
           + +++    L +S  +   Q+L+EQ + G  E    VM D + +V  I ++   D     
Sbjct: 188 EYETMAQGGLDASPVS---QILVEQSLLGWKEYELEVMRDLADNVVIICSIENVD----P 240

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI----SRSDFLFDPLSRKVFW 259
           +   + +S  V PA+   D  KE QRL   + + I   G+    S   F  +P++ +V  
Sbjct: 241 MGIHTGDSITVAPAQTLTD--KEYQRLRDYSIKIIREIGVETGGSNIQFAVNPINGQVIV 298

Query: 260 LEIN 263
           +E+N
Sbjct: 299 IEMN 302


>gi|28377385|ref|NP_784277.1| hypothetical protein lp_0493 [Lactobacillus plantarum WCFS1]
 gi|28270217|emb|CAD63118.1| unknown [Lactobacillus plantarum WCFS1]
          Length = 413

 Score = 37.0 bits (84), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 36/162 (22%), Positives = 73/162 (45%), Gaps = 22/162 (13%)

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS----SWNH---GDQLLIEQ 170
           +++   I  P ++KP    SS+ +  +  +Q +    LQ S    S+ H    ++ ++E+
Sbjct: 137 LEASKKIGFPLILKPTNTASSIDVFYVSDEQQLRERFLQISQLKQSYMHFKVREEYILEE 196

Query: 171 YVDG----IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE 226
           ++ G    +EL       A ++VTE    K  ++        +   HV P  + +   KE
Sbjct: 197 FMSGPEFSVELFLSNNEIAFVEVTEKHTTKPPYF--------VELMHVFPTTVDVAYKKE 248

Query: 227 VQRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINVQPG 267
           +   A+ A +A+G   G + ++        +V  +E+N +PG
Sbjct: 249 IINTAYCAVRALGFHNGPTHAEVKLTDAGARV--VEVNGRPG 288


>gi|317401779|gb|EFV82395.1| cyanophycin synthetase [Achromobacter xylosoxidans C54]
          Length = 871

 Score = 37.0 bits (84), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 27/102 (26%), Positives = 50/102 (49%), Gaps = 3/102 (2%)

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVNRF--TMDSQHLISPPYVIKPLKGGSSLGII 142
           +A  +S DK  +K+++S+CGVPV    LV+       +   I  P V+KP  G    G+ 
Sbjct: 212 IAEGISRDKDLTKELLSTCGVPVPEGRLVDSEDDAWSAAEDIGLPVVVKPYDGNHGRGVF 271

Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
                +   +   + +  + G  +++E++V G E    V+G+
Sbjct: 272 TNLTTREEVVSAYRVAV-DEGSGVIVERFVLGNEHRLLVVGN 312


>gi|253991536|ref|YP_003042892.1| hypothetical protein PAU_04063 [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|211638414|emb|CAR67036.1| Conserved Hypothetical Protein [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253782986|emb|CAQ86151.1| conserved hypothetical protein [Photorhabdus asymbiotica]
          Length = 431

 Score = 37.0 bits (84), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 31/50 (62%), Gaps = 2/50 (4%)

Query: 125 SPPY--VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
           S PY  VIKP  G ++LG++ +K   +IP    QS + + G+Q+L E+ +
Sbjct: 154 SVPYGVVIKPNCGRANLGVVAVKDRNNIPAAFAQSVAQSGGNQILAEELI 203


>gi|302775644|ref|XP_002971239.1| hypothetical protein SELMODRAFT_411783 [Selaginella moellendorffii]
 gi|300161221|gb|EFJ27837.1| hypothetical protein SELMODRAFT_411783 [Selaginella moellendorffii]
          Length = 557

 Score = 37.0 bits (84), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 46/195 (23%), Positives = 83/195 (42%), Gaps = 28/195 (14%)

Query: 83  GILASALSM--DKMRSKQVVSSCGVPVCPSI----LVNRFTMDSQHLISPPYVIKPLKGG 136
           G  A+A+S+  DK  SK+++S   VPV P        +         I  P +IKP+ GG
Sbjct: 139 GPSAAAISLMGDKSASKKLMSGANVPVVPGYHGDDQSHELLQSEADRIGYPVLIKPVLGG 198

Query: 137 SSLGIIVIKKDQSIPLDLLQS----SSWNHGD-QLLIEQYV-DGIELTCGVMGDASLDVT 190
              G+ ++       LD L+S    S+   GD ++LIE+Y+     +   + GD   +V 
Sbjct: 199 GGKGMRIVHSRDEF-LDSLRSALRESAAAFGDTRVLIEKYIAQPRHIEVQIFGDRFGNVV 257

Query: 191 EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
            +         +E   S       +  + P  +  +  R       +IG   ++ + F+ 
Sbjct: 258 HL---------FERDCSVQRRHQKIIEEAPAPLMSDDFR------NSIGQAAVNAAKFIV 302

Query: 251 DPLSRKVFWLEINVQ 265
           D  +   F++E+N +
Sbjct: 303 DTATGDFFFMEMNTR 317


>gi|255326691|ref|ZP_05367767.1| phosphoribosylamine--glycine ligase [Rothia mucilaginosa ATCC
           25296]
 gi|255295908|gb|EET75249.1| phosphoribosylamine--glycine ligase [Rothia mucilaginosa ATCC
           25296]
          Length = 427

 Score = 37.0 bits (84), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 27/101 (26%), Positives = 51/101 (50%), Gaps = 4/101 (3%)

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL--ISPPYVIKPLKGGSSLGIIV 143
           A+ L   K  +KQV+    VP   + + +        L     PYV+K     +  G++V
Sbjct: 96  AAQLEGSKAFAKQVMEEASVPTARAYVASNAAEAQAALDEFGAPYVVKDDGLAAGKGVVV 155

Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
            + D++  L+  Q+  +N G  ++IE+++DG E++  V+ D
Sbjct: 156 TE-DRTAALEHAQAC-FNAGGTVVIEEFLDGPEVSLFVISD 194


>gi|282853025|ref|ZP_06262362.1| conserved domain protein [Propionibacterium acnes J139]
 gi|282582478|gb|EFB87858.1| conserved domain protein [Propionibacterium acnes J139]
          Length = 96

 Score = 37.0 bits (84), Expect = 3.9,   Method: Composition-based stats.
 Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 1/56 (1%)

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           GISR D + D   R VF LE    PGMT  S+ P     AG    E+   +V+D +
Sbjct: 38  GISRVDAIVDESGRPVF-LEAGAAPGMTATSLVPVAMKAAGLDLGEVCSRLVDDVA 92


>gi|297538643|ref|YP_003674412.1| cyanophycin synthetase [Methylotenera sp. 301]
 gi|297257990|gb|ADI29835.1| cyanophycin synthetase [Methylotenera sp. 301]
          Length = 720

 Score = 37.0 bits (84), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 25/97 (25%), Positives = 46/97 (47%), Gaps = 9/97 (9%)

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGI- 141
           +A  +S DK  +KQ++ +CGVPV    +V       ++   I  P V+KP  G    G+ 
Sbjct: 207 IAEGISRDKDLTKQLLQNCGVPVPEGRIVESPEDAWEAAEDIGLPVVVKPSDGNHGRGVS 266

Query: 142 --IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
             ++ + D      L        G ++++E+++ G E
Sbjct: 267 TELMTRVDVEAAFKLADE----EGSEVIVERFIRGNE 299


>gi|302534518|ref|ZP_07286860.1| acetyl-CoA carboxylase, biotin carboxylase [Streptomyces sp. C]
 gi|302443413|gb|EFL15229.1| acetyl-CoA carboxylase, biotin carboxylase [Streptomyces sp. C]
          Length = 714

 Score = 37.0 bits (84), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 53/101 (52%), Gaps = 10/101 (9%)

Query: 83  GILASALSM--DKMRSKQVVSSCGVPVCP----SILVNRFTMDSQHLISPPYVIKPLKGG 136
           G  ASA+S+  DK+ +K+ V + GVPV P    S L +     +   I  P ++KP  GG
Sbjct: 104 GPPASAISLMGDKITAKETVRAAGVPVVPGSSGSGLTDAELAAAASEIGMPVLLKPSAGG 163

Query: 137 SSLGIIVIKKDQSIPLDLL----QSSSWNHGDQLLIEQYVD 173
              G+ +++ +  +  ++     ++ S    D LL+E+++D
Sbjct: 164 GGKGMRLVRDEALLAEEIAAARREAKSSFGDDTLLVERWID 204


>gi|291557897|emb|CBL35014.1| D-alanine-D-alanine ligase and related ATP-grasp enzymes
           [Eubacterium siraeum V10Sc8a]
          Length = 325

 Score = 37.0 bits (84), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 46/192 (23%), Positives = 81/192 (42%), Gaps = 27/192 (14%)

Query: 92  DKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
           DK  +  ++    +P     LV   T D+ +    P V+KP++G  S G++        P
Sbjct: 113 DKFSTNTLLLQNELPAVTDYLV---TADTVYNGEYPCVLKPIRGRGSQGVVKC----DTP 165

Query: 152 LDLLQS-----SSWNHGDQLLIEQYVDGIELTCGVMGDA-SLDVTEIAVPKSDFYSYELK 205
            + +++     +S  +GD ++ E+Y+ G E+T  V  D  SL   E    K+    Y   
Sbjct: 166 EEFIKARDEAFASGRYGDTMMAEEYLGGTEVTLTVFPDGTSLPFIERFDQKNGIAPYNGD 225

Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLA--FLAHQA---IGCRGISRSDFLFDPLSRKVFWL 260
              + ++ V+     L   ++   LA   L  +A   I CR     +F       K+F  
Sbjct: 226 VPVVKNSRVIEDTPQLTALRKSCELAVWLLGLKAVVRIDCRADKNGNF-------KMF-- 276

Query: 261 EINVQPGMTPVS 272
           + N +P +T  S
Sbjct: 277 DFNPKPNLTGAS 288


>gi|94309649|ref|YP_582859.1| cyanophycin synthetase [Cupriavidus metallidurans CH34]
 gi|93353501|gb|ABF07590.1| cyanophycin synthetase [Cupriavidus metallidurans CH34]
          Length = 883

 Score = 37.0 bits (84), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 24/96 (25%), Positives = 48/96 (50%), Gaps = 7/96 (7%)

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGII 142
           +  ++S DK  +K ++ SCGVPV    +V       D+   I  P V+KP  G    G+ 
Sbjct: 212 IGESISRDKDLTKSLLESCGVPVPEGRMVESAEDAWDAAEDIGVPVVVKPYDGNHGRGVF 271

Query: 143 --VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
             ++ +++   ++   + +   G  +++E++V G E
Sbjct: 272 TNLMTREE---VETAYAVAIEEGSGVIVERFVPGNE 304


>gi|308063998|gb|ADO05885.1| phosphoribosylamine--glycine ligase [Helicobacter pylori Sat464]
          Length = 424

 Score = 36.6 bits (83), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 34/128 (26%), Positives = 54/128 (42%), Gaps = 18/128 (14%)

Query: 64  EDGLVQAILELLEIPYTHSGIL-------ASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116
           E+ L+  + E+LE     +GIL       A+ L   K   K  V  CG+        N  
Sbjct: 75  EELLILGLTEMLE----KAGILVFGASKEAAKLETSKSYMKAFVKECGIKSASYFEANNL 130

Query: 117 TMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
                H+   S P VIK L   +S     I   Q   L +L+ +   + D ++IE +++G
Sbjct: 131 KEALNHIQNASFPLVIKALNKNTS-----IVHHQEEALKILEDAFKQNNDPVIIEPFLEG 185

Query: 175 IELTCGVM 182
            EL+   +
Sbjct: 186 FELSVTAL 193


>gi|189346885|ref|YP_001943414.1| Carbamoyl-phosphate synthase L chain ATP-binding [Chlorobium
           limicola DSM 245]
 gi|189341032|gb|ACD90435.1| Carbamoyl-phosphate synthase L chain ATP-binding [Chlorobium
           limicola DSM 245]
          Length = 485

 Score = 36.6 bits (83), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 49/220 (22%), Positives = 88/220 (40%), Gaps = 31/220 (14%)

Query: 92  DKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP-----PYVIKPLKGGSSLGIIVIKK 146
           DK+ SK++     VP  P I     T + +  +       P +IK   GG   G++ +  
Sbjct: 118 DKIESKKIAKEARVPTIPGINSPNTTEEIRRWMQEEDVVFPIIIKASSGGGGKGMVRVGN 177

Query: 147 DQSIPLDLLQSSSWNH----GDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYS 201
           D  +   L Q+ S        D++L+E++++ G  +   ++ D   +V  +       Y 
Sbjct: 178 DTELETALAQARSEAKKSFGNDEILVEKFIEKGKHIEVQIIADQHGNVLHL-------YD 230

Query: 202 YELKYSSLNSTHVLPAKIP---LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
            E      N   +  A  P    +    +   A    + IG       +FL D  + K +
Sbjct: 231 RECTLQRRNQKVIEEAPSPSLDEETRNSICETAVRLMRTIGYSSAGTVEFLLDAATGKFY 290

Query: 259 WLEIN----VQPGMTP-------VSIFPEMAAYAGYSFRE 287
           +LE+N    V+ G+T        VS+  ++A     SFR+
Sbjct: 291 FLEVNTRLQVEHGITELVTGVDIVSLMLDIAQGEPLSFRQ 330


>gi|329962783|ref|ZP_08300684.1| ATP-grasp domain protein [Bacteroides fluxus YIT 12057]
 gi|328529438|gb|EGF56346.1| ATP-grasp domain protein [Bacteroides fluxus YIT 12057]
          Length = 371

 Score = 36.6 bits (83), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 18/87 (20%), Positives = 44/87 (50%)

Query: 92  DKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
           +K   ++ +++ G+     I+V+         I  P ++KP+  G S G+  +   + + 
Sbjct: 102 NKFTMREALNAAGISNPQYIIVSEVEELDSVNIPFPCIVKPVDSGGSQGVTKVGSLEEVK 161

Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELT 178
              +++  ++   +++IEQY+DG E +
Sbjct: 162 AAFIRALDYSREGKVIIEQYIDGREFS 188


>gi|327355154|gb|EGE84011.1| Carboxylase:pyruvate/acetyl-CoA/propionyl-CoA [Ajellomyces
           dermatitidis ATCC 18188]
          Length = 670

 Score = 36.6 bits (83), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 24/115 (20%), Positives = 57/115 (49%), Gaps = 14/115 (12%)

Query: 88  ALSMDKMRSKQVVSSCGVPVCPSI--------LVNRFTMDSQHLISPPYVIKPLKGGSSL 139
           A + DK+++K++  +CGVP+  ++        L++RF  +    +  P ++K + GG   
Sbjct: 116 ARTGDKLQAKELAEACGVPILKAMKTPTNDINLISRFAAE----VGYPVMVKAVDGGGGR 171

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG--IELTCGVMGDASLDVTEI 192
           GI  +K    +   L +++  +   ++ +E+   G    +   ++GD + +V  +
Sbjct: 172 GIRFVKGPDELQSALDRATGESPSKKVFVEKAAVGGFHHVEVQIIGDGTGEVRHL 226


>gi|239615469|gb|EEQ92456.1| carboxylase:pyruvate/acetyl-CoA/propionyl-CoA [Ajellomyces
           dermatitidis ER-3]
          Length = 671

 Score = 36.6 bits (83), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 24/115 (20%), Positives = 57/115 (49%), Gaps = 14/115 (12%)

Query: 88  ALSMDKMRSKQVVSSCGVPVCPSI--------LVNRFTMDSQHLISPPYVIKPLKGGSSL 139
           A + DK+++K++  +CGVP+  ++        L++RF  +    +  P ++K + GG   
Sbjct: 116 ARTGDKLQAKELAEACGVPILKAMKTPTNDINLISRFAAE----VGYPVMVKAVDGGGGR 171

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG--IELTCGVMGDASLDVTEI 192
           GI  +K    +   L +++  +   ++ +E+   G    +   ++GD + +V  +
Sbjct: 172 GIRFVKGPDELQSALDRATGESPSKKVFVEKAAVGGFHHVEVQIIGDGTGEVRHL 226


>gi|296120555|ref|YP_003628333.1| hypothetical protein Plim_0283 [Planctomyces limnophilus DSM 3776]
 gi|296012895|gb|ADG66134.1| protein of unknown function DUF201 [Planctomyces limnophilus DSM
           3776]
          Length = 360

 Score = 36.6 bits (83), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 64/273 (23%), Positives = 106/273 (38%), Gaps = 58/273 (21%)

Query: 65  DGLVQAILELLEI--PYTHSGILAS-ALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ 121
           DG + AI++L E      H+   A+  L+ DK++  + +    +P  P+ LV        
Sbjct: 103 DGTLAAIIQLCEFLGARVHNSTSAAIQLTSDKLQLAEHLEKHRIPTIPTRLVQHAEELGT 162

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIP-LDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           H     YV+KP+ G  SL + V+   +  P  +  Q          +++ Y+ G   +  
Sbjct: 163 H---SRYVVKPIDGAGSLDVFVVNDWREAPETETCQ----------IVQPYLRGRSASVA 209

Query: 181 VMGDASLDVTE---------------------IAVPKSDFYSYELKYSSLNSTHVLPAKI 219
           V+  A +DV                       I  P        LKY            +
Sbjct: 210 VIMPALVDVENRDSSGQSSMASIVWPAASQRIIESPGEGHLPASLKYQG--------GAL 261

Query: 220 PLDIYKEVQR-----LAFLAHQAI-GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV-- 271
           P D +   +R     LA  A Q+I G RG +  D ++   S +   +EIN +  M+ +  
Sbjct: 262 PADEFSPEERATLEALALKACQSIEGLRGYTGVDLVWPEESAEPLVVEINPRLCMSYLGY 321

Query: 272 -SIFPEMAA--YAGYSFRELLLWM-VEDASCLR 300
             IF   AA   AGYS    ++    +D +C +
Sbjct: 322 RQIFGPQAALVVAGYSEAAAMVETSADDGACWK 354


>gi|220927591|ref|YP_002504500.1| cyanophycin synthetase [Clostridium cellulolyticum H10]
 gi|219997919|gb|ACL74520.1| cyanophycin synthetase [Clostridium cellulolyticum H10]
          Length = 893

 Score = 36.6 bits (83), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 29/118 (24%), Positives = 57/118 (48%), Gaps = 5/118 (4%)

Query: 82  SGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSL 139
           S  +A  ++ DK  +K+++    VPV   I+V   +   ++  ++  P VIKP+      
Sbjct: 204 SSCIAVDIASDKQMTKKLLMDNNVPVPCGIVVRTEQEAFEAVEMVGYPLVIKPIDSNQGK 263

Query: 140 GIIV-IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK 196
           G+ V I  +  I     ++  ++   ++++E+YV G +    V+GD    V E   P+
Sbjct: 264 GVTVNISTEDKIRAAYSEARKYSR--KVIVEKYVCGKDYRVLVVGDKVCAVAERRPPR 319


>gi|14030855|gb|AAK53061.1| nikkomycin biosynthesis protein SanS [Streptomyces ansochromogenes]
          Length = 424

 Score = 36.6 bits (83), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 43/188 (22%), Positives = 77/188 (40%), Gaps = 23/188 (12%)

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
           + GE  +++A     E+      + ++    DK   K  +++ G+ V P   + +F  D 
Sbjct: 83  SLGEREVLRAARIRAELGLPGQSLASATAYRDKHVMKSTLAAAGIDVAP---MRKFRTDD 139

Query: 121 QHL-----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG- 174
                   +  P V+K L  G+S G +V+  ++    DL            L E +V+G 
Sbjct: 140 DLAGFAWDVGFPVVVKELDSGASNGTVVLMDEE----DLRALPERATAAPRLAEAWVEGD 195

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYS--YELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
                G+M D  +    +AVP  + YS  + + Y +   T ++P   PL      +RL  
Sbjct: 196 FYHVNGLMKDGEV---VLAVPSRNLYSDWFSVAYDAPTMTGMMPDDHPLS-----ERLRG 247

Query: 233 LAHQAIGC 240
            A Q +  
Sbjct: 248 TARQVVAA 255


>gi|289209696|ref|YP_003461762.1| hypothetical protein TK90_2536 [Thioalkalivibrio sp. K90mix]
 gi|288945327|gb|ADC73026.1| protein of unknown function DUF201 [Thioalkalivibrio sp. K90mix]
          Length = 359

 Score = 36.6 bits (83), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 8/90 (8%)

Query: 92  DKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL----ISPPYVIKPLKGGSSLGIIVIKKD 147
           DK   ++ + + G+P CP  L      D +HL    ++ P V+KPL G SS GII  K+ 
Sbjct: 123 DKWAFQRFMETHGIP-CPKALRLEGPDDLKHLQDGGMTFPLVVKPLYGESSHGIIQAKRL 181

Query: 148 QSIPLDLLQSSSWNHGD-QLLIEQYVDGIE 176
           + I   L +     H    L++++Y  G +
Sbjct: 182 EDIEAHLARGG--RHAQFPLVVQEYAPGFD 209


>gi|159036239|ref|YP_001535492.1| phosphoribosylglycinamide synthetase [Salinispora arenicola
           CNS-205]
 gi|157915074|gb|ABV96501.1| phosphoribosylglycinamide synthetase [Salinispora arenicola
           CNS-205]
          Length = 420

 Score = 36.6 bits (83), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 51/117 (43%), Gaps = 19/117 (16%)

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS----------WNHGDQLLIEQYVD 173
           I  P VIKP     S GI  ++ D+ +   + Q                G + ++E+Y++
Sbjct: 144 IGLPAVIKPTGASGSKGIFELRDDEDLEAAVEQLEKIARPQFDAVFQQFGAEFIVEEYLE 203

Query: 174 GIELTC-GVMGDASLDVTEIAVP-KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           G EL+  G++      V  +     S  Y  EL+       HV+P+ +P D+  EVQ
Sbjct: 204 GEELSVEGLIAGGEPHVVMVTDKLTSAPYHLELQ-------HVMPSALPSDVLAEVQ 253


>gi|157736856|ref|YP_001489539.1| acetyl CoA carboxylase, biotin carboxylase subunit [Arcobacter
           butzleri RM4018]
 gi|315636024|ref|ZP_07891283.1| acetyl-CoA carboxylase, biotin carboxylase [Arcobacter butzleri
           JV22]
 gi|157698710|gb|ABV66870.1| acetyl CoA carboxylase, biotin carboxylase subunit [Arcobacter
           butzleri RM4018]
 gi|315479680|gb|EFU70354.1| acetyl-CoA carboxylase, biotin carboxylase [Arcobacter butzleri
           JV22]
          Length = 483

 Score = 36.6 bits (83), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 43/187 (22%), Positives = 86/187 (45%), Gaps = 22/187 (11%)

Query: 92  DKMRSKQVVSSCGVPVC-----PSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           DKM SK  +   GVPV      P I +      ++  I  P +IK   GG   G+ ++++
Sbjct: 116 DKMASKVAMKKVGVPVLEGTDEPIIDIEEGAKIAKQ-IGFPVIIKAAFGGGGRGMRIVRE 174

Query: 147 DQSIPLDLLQSSS------WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDF 199
           ++    +L +S+S      +  G +  IE+YV+    +   V+ D   +V  +       
Sbjct: 175 EKDFK-ELFESASNEAKKYFGRG-EAFIEKYVENPRHIEIQVIADKYGNVLHLGERDC-- 230

Query: 200 YSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
            S + ++  +    + P+ ++  +  KE+ R+A  A   +G   +   +FL DP    ++
Sbjct: 231 -SIQRRHQKV--IEIAPSPRLNNEARKELYRIATKAMFKLGYESVGTVEFLLDP-DDNIY 286

Query: 259 WLEINVQ 265
           ++E+N +
Sbjct: 287 FIEMNTR 293


>gi|226286959|gb|EEH42472.1| RNA binding protein [Paracoccidioides brasiliensis Pb18]
          Length = 582

 Score = 36.6 bits (83), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 1/63 (1%)

Query: 56  NVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR 115
           N LHG     G    I+E+L  P T S +L    ++D   ++   +S   PV PS L+ +
Sbjct: 156 NALHGKLNSTGETNLIVEILNTPST-SALLGRRNTIDHASNRAAPNSASQPVAPSALIRQ 214

Query: 116 FTM 118
            ++
Sbjct: 215 TSL 217


>gi|225683351|gb|EEH21635.1| RNA-binding protein Scw1 [Paracoccidioides brasiliensis Pb03]
          Length = 594

 Score = 36.6 bits (83), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 1/63 (1%)

Query: 56  NVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR 115
           N LHG     G    I+E+L  P T S +L    ++D   ++   +S   PV PS L+ +
Sbjct: 167 NALHGKLNSTGETNLIVEILNTPST-SALLGRRNTIDHASNRAAPNSASQPVAPSALIRQ 225

Query: 116 FTM 118
            ++
Sbjct: 226 TSL 228


>gi|239814065|ref|YP_002942975.1| cyanophycin synthetase [Variovorax paradoxus S110]
 gi|239800642|gb|ACS17709.1| cyanophycin synthetase [Variovorax paradoxus S110]
          Length = 855

 Score = 36.6 bits (83), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 35/125 (28%), Positives = 62/125 (49%), Gaps = 14/125 (11%)

Query: 66  GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH--- 122
           G  Q  ++  E+  T SG+ A +++ DK  +KQ++++ GVPV     + R   D+Q    
Sbjct: 180 GSKQRRIQAAEVDST-SGV-AESIAQDKELTKQLLNAAGVPVP----LGRPVSDAQDGWA 233

Query: 123 ---LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
               I  P V+KP  G    G+ V    Q   L     S+  +G ++++E+++ G +   
Sbjct: 234 AAMEIGLPVVVKPQDGNQGKGVTVNITTQE-QLTAAYDSAAAYG-EVMVEKFLPGFDFRL 291

Query: 180 GVMGD 184
            V+GD
Sbjct: 292 LVVGD 296


>gi|308048935|ref|YP_003912501.1| GNAT family acetyltransferase [Ferrimonas balearica DSM 9799]
 gi|307631125|gb|ADN75427.1| GNAT-family acetyltransferase TIGR03103 [Ferrimonas balearica DSM
           9799]
          Length = 579

 Score = 36.6 bits (83), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 31/108 (28%), Positives = 53/108 (49%), Gaps = 12/108 (11%)

Query: 85  LASALSMDKMRSK----QVVSSCGVPVCPSILVNRFTMD----SQHLISPPYVIKPLKGG 136
           L SA++M +  +K    ++++  G+ V     +N  +       QH    P V+KP +G 
Sbjct: 317 LTSAIAMTRCDNKDLTHRLLAKAGLKVPTQKTINNASEAIAFWRQH---GPMVLKPARGE 373

Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
              G+ V  +++    D  Q +S   G  LL EQY++G +L   V+GD
Sbjct: 374 QGNGVFVDLRNEQAIHDAYQQASALEG-PLLAEQYIEGQDLRILVIGD 420


>gi|302898963|ref|XP_003047952.1| hypothetical protein NECHADRAFT_79968 [Nectria haematococca mpVI
           77-13-4]
 gi|256728884|gb|EEU42239.1| hypothetical protein NECHADRAFT_79968 [Nectria haematococca mpVI
           77-13-4]
          Length = 1841

 Score = 36.6 bits (83), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 38/183 (20%), Positives = 86/183 (46%), Gaps = 15/183 (8%)

Query: 93  KMRSKQVVSSCGVPV---CPSILVN-RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQ 148
           K R++ + +  GVP    C S+L +    ++    I  P ++K   GG  +G+   K  +
Sbjct: 758 KHRARAIAADAGVPNVPGCDSLLTSLEEALEEGQKIGFPLMLKSTAGGGGIGLSHCKDVE 817

Query: 149 SIPL---DLLQSSSWNHGDQ-LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYE 203
           S+      + + ++ N G+  + +E++V     +   ++GD +  V  IA  + D     
Sbjct: 818 SLATTFESVRRQATANFGNGGVFLERFVQRARHVEVQILGDGTGKV--IAAGERDC---S 872

Query: 204 LKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
           L+          PA  +P+++ ++++  A     ++  R +   +F++D  + + F+LE+
Sbjct: 873 LQRRHQKVVEESPAIMVPVEVREKMKAAAASLASSVKYRNVGTVEFIYDIDTEEFFFLEV 932

Query: 263 NVQ 265
           N +
Sbjct: 933 NTR 935


>gi|238061489|ref|ZP_04606198.1| carbamoyl-phosphate synthase subunit L, ATP-binding [Micromonospora
           sp. ATCC 39149]
 gi|237883300|gb|EEP72128.1| carbamoyl-phosphate synthase subunit L, ATP-binding [Micromonospora
           sp. ATCC 39149]
          Length = 690

 Score = 36.6 bits (83), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 42/179 (23%), Positives = 84/179 (46%), Gaps = 17/179 (9%)

Query: 92  DKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
           DKM +K +++  GVP+ P+        D+  + + P ++K   GG   G+ ++     + 
Sbjct: 144 DKMAAKALLADAGVPMLPTW------TDTAEITAFPVLVKASTGGGGRGMRIVSDPAGLA 197

Query: 152 ---LDLLQSSSWNHGD-QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
                  + ++   GD  + +E+YV+ G  +   V GD+   V  +A+ + D  S + ++
Sbjct: 198 EAVASARREAAAAFGDGTVFVERYVERGRHVEVQVFGDSHGTV--LALGERD-CSIQRRH 254

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             +      PA +P  + + +   A  A +A+G  G    +FL  P   + F+LE+N +
Sbjct: 255 QKI--VEEAPAVLPDGVRQRLHAAAVAAARAVGYVGAGTVEFLLAP-DGEFFFLEMNTR 310


>gi|113475694|ref|YP_721755.1| SSU ribosomal protein S6P modification protein [Trichodesmium
           erythraeum IMS101]
 gi|123352344|sp|Q113P2|RIMK_TRIEI RecName: Full=Ribosomal protein S6 modification protein
 gi|110166742|gb|ABG51282.1| SSU ribosomal protein S6P modification protein [Trichodesmium
           erythraeum IMS101]
          Length = 299

 Score = 36.6 bits (83), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 44/200 (22%), Positives = 89/200 (44%), Gaps = 22/200 (11%)

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLK 134
           +T +  LA + S DK+   Q+++  G+ + P      FT D   LI+     P VIK L+
Sbjct: 86  FTANPSLAISRSRDKLHCLQLLAREGIEL-PVTSFAHFTKDINSLINTVGGAPLVIKLLE 144

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD---GIELTCGVMGDASLDVTE 191
           G   +G+++ +  Q     +   S  N     L++++++   G ++ C V+GD  +   +
Sbjct: 145 GSQGIGVVLAETYQVAKSVIEAFSGLNA--NFLVQEFIEEAGGADVRCFVVGDRVIAAIK 202

Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
               + +F S   +  +     + P +         + +A  + +AIG + ++  D L  
Sbjct: 203 RQGTEGEFRSNLHQGGTAKKIKLTPQE---------RSIAMRSAKAIGLK-VAGVDLLRS 252

Query: 252 PLSRKVFWLEINVQPGMTPV 271
                V  +E+N  PG+  +
Sbjct: 253 DHGPVV--MEVNSSPGLEGI 270


>gi|333031058|ref|ZP_08459119.1| ATP-grasp fold domain protein, DUF201-type [Bacteroides coprosuis
           DSM 18011]
 gi|332741655|gb|EGJ72137.1| ATP-grasp fold domain protein, DUF201-type [Bacteroides coprosuis
           DSM 18011]
          Length = 371

 Score = 36.6 bits (83), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 31/165 (18%), Positives = 74/165 (44%), Gaps = 14/165 (8%)

Query: 108 CPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL 167
           CP          +  + + P +IKP     S G+  +   + + + +  + S ++  ++L
Sbjct: 115 CPQPHFEILNESTYSIDTFPVIIKPSDSSCSNGVSKVTCQEELDVAIRNAFSASNQHEVL 174

Query: 168 IEQYVDGIELTCGVMGDAS----LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           +E+Y++G E++   +   +    L +T+     +  +        + + H  P+++ LD+
Sbjct: 175 VEEYIEGKEISVESISFHNKHYILTITDKETTGAPHF--------VETAHHQPSQLNLDL 226

Query: 224 YKEVQRLAFLAHQAIG-CRGISRSDFLFDPLSRKVFWLEINVQPG 267
            K+++        AIG   G + S+F  D     V+++E+  + G
Sbjct: 227 QKKIKTYTNNILNAIGISNGAAHSEFKIDA-DGNVYFIEVGARGG 270


>gi|319898970|ref|YP_004159063.1| Biotin carboxylase [Bartonella clarridgeiae 73]
 gi|319402934|emb|CBI76485.1| Biotin carboxylase [Bartonella clarridgeiae 73]
          Length = 452

 Score = 36.6 bits (83), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 40/186 (21%), Positives = 84/186 (45%), Gaps = 21/186 (11%)

Query: 92  DKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147
           DK+ +K+ V   G+P+ P     I      +   + I  P +IK   GG   G+ V+  +
Sbjct: 115 DKIEAKKTVKKLGIPIVPGSNEAIAEEEEALRIANEIGYPVIIKASAGGGGCGMKVVHSE 174

Query: 148 QSIPLDLL----QSSSWNHGDQLLIEQYVDG---IELTCGVMGDASLDVTEIAVPKSDFY 200
           + + +       ++S+  + D + IE+Y++    IE+   V+GD + +   +        
Sbjct: 175 RKLLIAFKTARSEASAAFNDDAVYIEKYLEKPRHIEIQ--VIGDGAGNAIHLGERDCSLQ 232

Query: 201 SYELK-YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
               K +   NS    PA    +  K++  +   A   +G RG+   +FL++  + + ++
Sbjct: 233 RRHQKVWEEANS----PALNETE-RKKIGNVVANACAKLGYRGVGTVEFLYE--NGEFYF 285

Query: 260 LEINVQ 265
           +E+N +
Sbjct: 286 IEMNTR 291


>gi|159122515|gb|EDP47636.1| conserved hypothetical protein [Aspergillus fumigatus A1163]
          Length = 663

 Score = 36.6 bits (83), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 3/74 (4%)

Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG-VMGDA 185
           P ++KP  G SS G+  ++   + P  +    +  HG + ++E Y DG E+    V+ D 
Sbjct: 356 PLIVKPCDGWSSEGVSRVESPDAFPAAIKSIDTSRHGTEFVMEPYCDGPEVDVNLVLLDG 415

Query: 186 SLDVTEIA--VPKS 197
            +   EI   +PKS
Sbjct: 416 EVLFAEICDDLPKS 429


>gi|15678762|ref|NP_275879.1| hypothetical protein MTH736 [Methanothermobacter thermautotrophicus
           str. Delta H]
 gi|2621825|gb|AAB85240.1| conserved protein [Methanothermobacter thermautotrophicus str.
           Delta H]
          Length = 338

 Score = 36.6 bits (83), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 47/196 (23%), Positives = 85/196 (43%), Gaps = 19/196 (9%)

Query: 77  IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGG 136
           +P   SG  A+ +S DK ++K+  S   +      L++      + +   P V+K  +G 
Sbjct: 94  VPVVASGPEAAEISTDKFKTKEFFSRNRIRTPEYDLID----SPEDVTEMPVVLKQREGQ 149

Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHG-DQLLIEQYVDGIELTCGVM--GDASLDVTEIA 193
              G++V     + P D+ +   + H  D  L+E+Y+ G E++  V+   D +L +  +A
Sbjct: 150 GGSGVMV----AATPSDVRE---YLHAHDHALMEEYIQGREISVEVLRWNDETLPL--VA 200

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
           V K D     L    L      PA I      E   +A    + +G  G +  D +    
Sbjct: 201 VDKGDTRMDGLH--PLRKVKRAPAIIRGFDGMEALAMASEVTELLGAEGNTDVDMIVSE- 257

Query: 254 SRKVFWLEINVQPGMT 269
             K++ +E+N +P  T
Sbjct: 258 DGKLYAIEVNTRPSGT 273


>gi|148555411|ref|YP_001262993.1| phosphoribosylglycinamide synthetase [Sphingomonas wittichii RW1]
 gi|148500601|gb|ABQ68855.1| phosphoribosylglycinamide synthetase [Sphingomonas wittichii RW1]
          Length = 344

 Score = 36.6 bits (83), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 54/250 (21%), Positives = 100/250 (40%), Gaps = 16/250 (6%)

Query: 52  DLAFNVLH--GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109
           D  F +L+  G    + L+  + E   IPY  +  +   LS DK  +K+V  + G+P  P
Sbjct: 74  DFVFPLLNRGGFLNSEMLLPLLCERRGIPYLGASPILRGLSDDKHLAKRVAVARGLPTAP 133

Query: 110 SILVNRFTMDSQHLISPP--YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL 167
             L  R       L  P   +V+KP    +S GI      + +   + +      G  ++
Sbjct: 134 WALFRRGAPIDLSLCPPAARHVVKPNASSASWGISAAHDLEDVRAAVARLH--KEGHDVI 191

Query: 168 IEQYVDGIELTCGVMG-DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP----AKIPLD 222
           +E ++ G ++   V+  D    +  + + + D   Y   Y  L   +++     A  PLD
Sbjct: 192 VEPFIPGHDIEVSVITLDGEPFILPVQIVEQDDPGYLRTY--LEKRNLIDDQAYAIRPLD 249

Query: 223 ---IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279
              +  E  R A    +        R +F  +  +  + ++E+N+   +         AA
Sbjct: 250 DDRLRIEATRQAIEMMKEFLPFDYGRFEFRLNAATGALSFMEVNLNCNLWSRKTIAMAAA 309

Query: 280 YAGYSFRELL 289
             G+S  EL+
Sbjct: 310 QIGWSHAELI 319


>gi|224477643|ref|YP_002635249.1| hypothetical protein Sca_2159 [Staphylococcus carnosus subsp.
           carnosus TM300]
 gi|222422250|emb|CAL29064.1| conserved hypothetical protein [Staphylococcus carnosus subsp.
           carnosus TM300]
          Length = 369

 Score = 36.6 bits (83), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 69/161 (42%), Gaps = 24/161 (14%)

Query: 32  KVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS- 90
           K +QID   SVG        DLA  V             + E L++P+  S   A A + 
Sbjct: 61  KDNQIDAVYSVG-------SDLAMPV----------ANKLSETLDLPHFVSYETAYACNH 103

Query: 91  MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150
            D+MR +    +  VP   +        D Q  I  P  +KP  G    GI +++  +++
Sbjct: 104 KDEMRQRTKGIAGSVPFEITQ-----EADFQTEIDFPVFVKPTDGQGQRGISLVETKEAL 158

Query: 151 PLDLLQSSSWNHGDQLLIEQYVDGIELTC-GVMGDASLDVT 190
           P  + ++   +     +IE+Y+DG E++  G + D  L  T
Sbjct: 159 PEAIRKAIENSREGSAIIERYIDGYEISVNGYVVDGKLQFT 199


>gi|149913000|ref|ZP_01901534.1| Carbamoyl-phosphate synthase small chain [Roseobacter sp. AzwK-3b]
 gi|149813406|gb|EDM73232.1| Carbamoyl-phosphate synthase small chain [Roseobacter sp. AzwK-3b]
          Length = 381

 Score = 36.6 bits (83), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 25/115 (21%), Positives = 55/115 (47%), Gaps = 2/115 (1%)

Query: 68  VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPP 127
           V A+ E L +P+ H     + L  DK   +  ++   +   P   V R   +++     P
Sbjct: 81  VVALSERLGLPHFHDSAFVALLD-DKAAMRAFLAEHELGAVPFRRVRRLE-EAEGWRQFP 138

Query: 128 YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            V+KP+      G+  + +  ++   L+++ + +     +IE ++DG+EL+C ++
Sbjct: 139 CVVKPVDAQGQRGVERVDEPGALAAALVRAMAVSRSGCAIIEAFLDGVELSCNLL 193


>gi|10639829|emb|CAC11141.1| NikS protein [Streptomyces tendae]
          Length = 424

 Score = 36.6 bits (83), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 42/185 (22%), Positives = 75/185 (40%), Gaps = 17/185 (9%)

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--SILVNRFTM 118
           + GE  +++A     E+      + ++    DK   K  +++ G+ V P      N    
Sbjct: 83  SLGEREVLRAARIRAELGLPGQSLASATAYRDKHVMKSTLAAAGIDVAPMRKFRTNDDLA 142

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IEL 177
           +    +  P V+K L  G+S G +V+  ++    DL            L E +V+G    
Sbjct: 143 EFAWKVGFPVVVKELDSGASNGTVVLMDEE----DLRALPERATAAPRLAEAWVEGDFYH 198

Query: 178 TCGVMGDASLDVTEIAVPKSDFYS--YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
             G+M D  +    +AVP  + YS  + + Y +   T ++P   PL      +RL   A 
Sbjct: 199 VNGLMKDGEV---VLAVPSRNLYSDWFSVAYDAPTMTGMMPDDHPLS-----ERLRSTAR 250

Query: 236 QAIGC 240
           Q +  
Sbjct: 251 QVVAA 255


>gi|30248926|ref|NP_840996.1| putative cyanophycin synthetase [Nitrosomonas europaea ATCC 19718]
 gi|30138543|emb|CAD84833.1| putative cyanophycin synthetase [Nitrosomonas europaea ATCC 19718]
          Length = 768

 Score = 36.6 bits (83), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 30/110 (27%), Positives = 50/110 (45%), Gaps = 21/110 (19%)

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD------SQHLISPPYVIKPLKGGSS 138
           +A  +S DK  +K ++ +CGVPV       R   D      +   I  P VIKP  G   
Sbjct: 230 IAENISRDKELTKSLLRACGVPVPEG----RIVTDPADAWLAAEDIGLPVVIKPGDGNHG 285

Query: 139 LGIIVIKKDQ-----SIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
            G+ +   ++     + P+ L +      G  +L+E+Y+ GIE    ++G
Sbjct: 286 RGVFIELSNREEIEAAFPIALQE------GSDVLVERYIPGIEHRLLIVG 329


>gi|255712697|ref|XP_002552631.1| KLTH0C09438p [Lachancea thermotolerans]
 gi|238934010|emb|CAR22193.1| KLTH0C09438p [Lachancea thermotolerans]
          Length = 353

 Score = 36.2 bits (82), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 29/97 (29%), Positives = 48/97 (49%), Gaps = 9/97 (9%)

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS---RSDFLFDPLSRKVFW 259
           + K S+++  +V     PL + K   +LA+ +   +   G+S   +SDF   PL+R+V  
Sbjct: 175 QAKKSTVSRQYVPDEPTPLSLLKYAPKLAYSSSSKMSSFGVSTLDQSDF---PLTRRVN- 230

Query: 260 LEINVQPGMTP--VSIFPEMAAYAGYSFRELLLWMVE 294
           L +   P   P  VS+ P  AA+  Y+    L+W  E
Sbjct: 231 LGVATSPSQKPLNVSLSPRTAAFGQYAPASSLVWCKE 267


>gi|317154409|ref|YP_004122457.1| D-alanine--D-alanine ligase domain-containing protein
           [Desulfovibrio aespoeensis Aspo-2]
 gi|316944660|gb|ADU63711.1| D-alanine--D-alanine ligase domain protein [Desulfovibrio
           aespoeensis Aspo-2]
          Length = 337

 Score = 36.2 bits (82), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 37/168 (22%), Positives = 74/168 (44%), Gaps = 13/168 (7%)

Query: 26  LEDAGFKVSQIDVDRSVGLVLAHL---KPDLAFNVLHGNFGED---GLVQAILELLEIPY 79
           L + G+ V ++++   +G  ++ L   +P + FN++      D    L   I   L +P+
Sbjct: 34  LRELGWSVVEVELGSDLGEAVSTLQGIRPGVVFNLVESIMDSDELANLTPVIFRKLGLPF 93

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP-PYVIKPLKGGSS 138
           T +      L+ DK+ +K+ + S G+P      V+   +       P  Y++K     +S
Sbjct: 94  TGADSSVLFLTNDKLAAKRHMQSVGLPTPAG--VDETGLKRGRFPGPGRYIVKSRCEHAS 151

Query: 139 LGI----IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
           LG+    +V  K     L  + +     G   L E+++DG E +  ++
Sbjct: 152 LGLDETSVVNVKTADELLAAMAARRHKLGGSCLAERFIDGREFSVSLL 199


>gi|260220382|emb|CBA27866.1| Cyanophycin synthetase [Curvibacter putative symbiont of Hydra
           magnipapillata]
          Length = 602

 Score = 36.2 bits (82), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 62/125 (49%), Gaps = 13/125 (10%)

Query: 66  GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV--CPSILVNRFTMDSQHL 123
           G  Q  ++  E+  T +  +A A++ DK  +K+++S+ GVPV    S++       +   
Sbjct: 167 GSKQRRIQAAEMDVTSA--IAEAIAQDKELTKKLLSAAGVPVPGGRSVIDAEDAWAAAQE 224

Query: 124 ISPPYVIKPLKGGSSLGIIV--IKKDQSIPLDLLQ--SSSWNHGDQLLIEQYVDGIELTC 179
           I  P V+KP  G    G+ V    K+Q     LL+  + +    D +L+E+++ G +   
Sbjct: 225 IGLPVVVKPNDGNQGKGVTVNITSKEQ-----LLKAFAVAKEFRDDILVERFMPGNDFRL 279

Query: 180 GVMGD 184
            V+GD
Sbjct: 280 LVVGD 284


>gi|70984449|ref|XP_747731.1| conserved hypothetical protein [Aspergillus fumigatus Af293]
 gi|66845358|gb|EAL85693.1| conserved hypothetical protein [Aspergillus fumigatus Af293]
          Length = 574

 Score = 36.2 bits (82), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 48/101 (47%), Gaps = 8/101 (7%)

Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG-VMGDA 185
           P ++KP  G SS G+  ++   + P  +    +  HG + ++E Y DG E+    V+ D 
Sbjct: 267 PLIVKPCDGWSSEGVSRVESPDAFPAAVKSIDTSRHGTEFVMEPYCDGPEVDVNLVLLDG 326

Query: 186 SLDVTEIA--VPKSDFYSYELKYSSLNSTH----VLPAKIP 220
            +   EI   +PKS   +  L   SL + H    V P+ +P
Sbjct: 327 EVLFAEICDDLPKSADVN-GLTVGSLTNFHELYSVYPSALP 366


>gi|325285852|ref|YP_004261642.1| ATP-grasp fold domain-containing protein [Cellulophaga lytica DSM
           7489]
 gi|324321306|gb|ADY28771.1| ATP-grasp fold domain protein, DUF201-type [Cellulophaga lytica DSM
           7489]
          Length = 347

 Score = 36.2 bits (82), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 42/171 (24%), Positives = 75/171 (43%), Gaps = 40/171 (23%)

Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS---SWNHGDQLLIEQYVDGIELTCGVMG 183
           P V+KP++G  S G+ ++K ++ +   L  SS   S  +G  + +EQ++ G E+T  VM 
Sbjct: 148 PIVVKPIRGRGSQGVSLVKNEKELNAKL--SSLFLSKQYGTSVYLEQFLSGQEITITVMP 205

Query: 184 DASLDV--------TEIAVPKSDFYSYELKYSSLNST-HVLPAKIPLD-----------I 223
             S  +        T   +P    ++++   +  N T  V+     LD           +
Sbjct: 206 SGSYIINNNKKQFTTAWCLPPVKRFNHQNGIAPYNGTVAVIKNSALLDNSERNSNQIIAV 265

Query: 224 YKEVQRLAFLAHQA----IGCRGISRSD-FLFDPLSRKVFWLEINVQPGMT 269
            K+ ++ A L H      I CR   + + +LFD          +N++P MT
Sbjct: 266 CKQCEKAAELLHIKAPIRIDCRADEKGNYYLFD----------VNMKPNMT 306


>gi|242790098|ref|XP_002481495.1| 3-methylcrotonyl-CoA carboxylase subunit alpha (MccA), putative
           [Talaromyces stipitatus ATCC 10500]
 gi|218718083|gb|EED17503.1| 3-methylcrotonyl-CoA carboxylase subunit alpha (MccA), putative
           [Talaromyces stipitatus ATCC 10500]
          Length = 696

 Score = 36.2 bits (82), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 45/186 (24%), Positives = 88/186 (47%), Gaps = 19/186 (10%)

Query: 92  DKMRSKQVVSSCGVPVCPSIL-VNR---FTMDSQHLISPPYVIKPLKGGSSLGIIVIK-- 145
           DK RSK+++++ GVP  P     N+   F       +  P +IK +KGG   G+ +++  
Sbjct: 150 DKSRSKKIMTAAGVPCVPGYHGTNQDPLFLESEADKMQYPVLIKAVKGGGGKGMRIVRSK 209

Query: 146 ---KDQ--SIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDF 199
              +DQ  S  ++ L S   +H   +L+E+Y+     +   V  D   +   +A+ + D 
Sbjct: 210 TEFQDQLRSAKMEALNSFGNDH---MLVEKYITTPRHIEVQVFADKHGNC--VALGERD- 263

Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
            S + ++  +      P  +P  + K++   A  A  A+G  G    +F+FD  +   ++
Sbjct: 264 CSIQRRHQKILEESPAP-HLPDSVRKDLWEKARAAALAVGYEGAGTVEFIFDNDTGNFYF 322

Query: 260 LEINVQ 265
           +E+N +
Sbjct: 323 MEMNTR 328


>gi|183220927|ref|YP_001838923.1| hypothetical protein LEPBI_I1540 [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
 gi|189911023|ref|YP_001962578.1| biotin carboxylase [Leptospira biflexa serovar Patoc strain 'Patoc
           1 (Ames)']
 gi|167775699|gb|ABZ94000.1| Biotin carboxylase [Leptospira biflexa serovar Patoc strain 'Patoc
           1 (Ames)']
 gi|167779349|gb|ABZ97647.1| Conserved hypothetical protein [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
          Length = 400

 Score = 36.2 bits (82), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 47/96 (48%), Gaps = 6/96 (6%)

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSI--LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIV 143
           ++ L +DK + K VVS  G+PV  SI  L    T D +  +  P + KP +G    GI V
Sbjct: 104 STNLFLDKEKFKLVVSKYGIPVPKSIPNLGTNKTKDKKPELLFPIIAKPKEGSGKKGISV 163

Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
           ++ +    ++  + +     +  L+E Y  G E+T 
Sbjct: 164 LESE----VEYKKFTKSRIHESFLLETYTPGDEVTV 195


>gi|145250613|ref|XP_001396820.1| pyruvate carboxylase [Aspergillus niger CBS 513.88]
 gi|134082342|emb|CAK42357.1| unnamed protein product [Aspergillus niger]
          Length = 650

 Score = 36.2 bits (82), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 29/116 (25%), Positives = 50/116 (43%), Gaps = 15/116 (12%)

Query: 46  LAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS 102
           L  L  D A + +H  +G   E     A ++   I     G    + + DK+++KQ+   
Sbjct: 70  LVRLAQDNAIDAIHPGYGFLSESADFAARMQDAGITVIGPGSSVLSRTGDKLQAKQLAVE 129

Query: 103 CGVPVCPSIL--------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150
           C VPV P++         V  F    Q+    P ++K + GG   GI ++  D+ +
Sbjct: 130 CDVPVLPAMAQPTADVAEVRAFVKQVQY----PVMVKAVDGGGGRGIRLVYGDEGL 181


>gi|325093888|gb|EGC47198.1| 3-methylcrotonyl-CoA carboxylase biotin-containing subunit
           [Ajellomyces capsulatus H88]
          Length = 1276

 Score = 36.2 bits (82), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 40/183 (21%), Positives = 76/183 (41%), Gaps = 13/183 (7%)

Query: 92  DKMRSKQVVSSCGVPVCPSILVNRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKD 147
           DK RSK+++++ GVP  P    +  +M+           P +IK +KGG   G+ +    
Sbjct: 709 DKSRSKEIMTAAGVPCVPGYHGDNQSMEFLEAEAEKTKFPVLIKAVKGGGGKGMRIASSK 768

Query: 148 QSIPLDLLQSSSWNHG----DQLLIEQYVDGIE-LTCGVMGDASLDVTEIAVPKSDFYSY 202
           ++    L+ + S        D +L+E+Y+     +   V  D   +   +          
Sbjct: 769 ETFRDQLISAKSEAMNSFGDDTMLVEKYITTPRHIEVQVFADKHGNCVALGERDCSIQRR 828

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
             K    +    LP     DI+ + +  A     A+G  G    +F+FD  + + F++E+
Sbjct: 829 HQKILEESPAPHLPEATRKDIWDKARAAAL----AVGYEGAGTVEFIFDNDTGEFFFMEM 884

Query: 263 NVQ 265
           N +
Sbjct: 885 NTR 887


>gi|150015283|ref|YP_001307537.1| cyanophycin synthetase [Clostridium beijerinckii NCIMB 8052]
 gi|149901748|gb|ABR32581.1| cyanophycin synthetase [Clostridium beijerinckii NCIMB 8052]
          Length = 880

 Score = 36.2 bits (82), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 26/88 (29%), Positives = 46/88 (52%), Gaps = 3/88 (3%)

Query: 89  LSMDKMRSKQVVSSCGVPVCP-SILVNRFTM-DSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           +S DK+ +KQ++ +  +PV   S ++N   +      I  P V+KP  G    G+I+  K
Sbjct: 210 ISCDKLLTKQLLQTQNIPVADGSKVLNLIGLLQEAERIGYPVVLKPQCGNKGQGVILNIK 269

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
           DQ   +D   +   N  D +++E+Y +G
Sbjct: 270 DQKQLVDAYINLRKNQKD-IILEKYFEG 296


>gi|91787311|ref|YP_548263.1| cyanophycin synthetase [Polaromonas sp. JS666]
 gi|91696536|gb|ABE43365.1| Cyanophycin synthetase [Polaromonas sp. JS666]
          Length = 743

 Score = 36.2 bits (82), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 24/101 (23%), Positives = 51/101 (50%), Gaps = 3/101 (2%)

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGII 142
           +A  ++ DK  +K ++++CGVPV    +V+      ++   I  P V+KP  G    G +
Sbjct: 216 IAEGIAHDKDLTKSLLATCGVPVPDGEIVSTAERAWEAAQDIGLPVVVKPSDGNHGRG-V 274

Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
            +  +    ++     +  HG ++++E+++ G E    V+G
Sbjct: 275 SLDLNTREEVEAAFRVAEPHGSEVMVERFIRGHEHRLLVVG 315


>gi|295395551|ref|ZP_06805745.1| acetyl/propionyl-CoA carboxylase [Brevibacterium mcbrellneri ATCC
           49030]
 gi|294971570|gb|EFG47451.1| acetyl/propionyl-CoA carboxylase [Brevibacterium mcbrellneri ATCC
           49030]
          Length = 650

 Score = 36.2 bits (82), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 28/100 (28%), Positives = 48/100 (48%), Gaps = 10/100 (10%)

Query: 83  GILASALSM--DKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL----ISPPYVIKPLKGG 136
           G  ASA+    DK+ +KQ V+S GVP+ P +  +  + D        +  P +IKP  GG
Sbjct: 104 GPTASAIRTMGDKITAKQAVASRGVPLVPGVAESGLSNDQLEKAALDVGMPVLIKPSAGG 163

Query: 137 SSLGIIVIKKDQSIPLDL----LQSSSWNHGDQLLIEQYV 172
              G+  + K + +   L     +++S    D L +E+ +
Sbjct: 164 GGKGMHAVFKQEDLRESLEAARREAASSFGDDTLFLERLI 203


>gi|218437612|ref|YP_002375941.1| glutathione synthase [Cyanothece sp. PCC 7424]
 gi|218170340|gb|ACK69073.1| Glutathione synthase [Cyanothece sp. PCC 7424]
          Length = 622

 Score = 36.2 bits (82), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 24/92 (26%), Positives = 46/92 (50%), Gaps = 5/92 (5%)

Query: 97  KQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIV-IKKDQSIPL- 152
           K  +++CG PV    +V   R  ++S   +  P V+KP+ G   +G+   I+ D+ +   
Sbjct: 206 KGFLANCGFPVPQGYVVYSLREALNSAEDLGYPVVVKPVIGHKGIGVTANIENDKELEFA 265

Query: 153 -DLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
            D    +S N   Q+++E+Y+ G +     +G
Sbjct: 266 YDRAVDASPNQRGQIIVEKYIPGADFRLLCVG 297


>gi|166363988|ref|YP_001656261.1| ribosomal protein S6 modification protein [Microcystis aeruginosa
           NIES-843]
 gi|166086361|dbj|BAG01069.1| ribosomal protein S6 modification protein [Microcystis aeruginosa
           NIES-843]
          Length = 301

 Score = 36.2 bits (82), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 62/280 (22%), Positives = 116/280 (41%), Gaps = 43/280 (15%)

Query: 12  REVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFN--------------V 57
           ++ SL S K    A E  G +V  I+  R    + +H KP + +N               
Sbjct: 8   QDASLYSTKRLKEAGEAQGHEVRVINYLRCYMNITSH-KPTVVYNGKPLESFDAIIPRIA 66

Query: 58  LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117
               F    +V+   E++ + +T +   A + S DK+R  Q+++  G+ + P   +   T
Sbjct: 67  ASKTFYGTAVVRQ-FEVMNV-FTANDSQAISRSRDKLRCLQILAREGIGL-PVTGIAHAT 123

Query: 118 MDSQHLISP----PYVIKPLKGGSSLGIIVIKKDQSIP--LDLLQSSSWNHGDQLLIEQY 171
            D   LI      P VIK L+G   +G+++ + DQ+    ++  +    N    +L+++Y
Sbjct: 124 QDIDGLIETVGGTPLVIKLLEGTQGIGVVLAETDQAAKSVIEAFRQLEAN----ILVQEY 179

Query: 172 VD---GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           +    G +L C V+    +   +    + DF S   +        + P         E +
Sbjct: 180 IKEASGADLRCFVIDGKVVASMKRQGAEGDFRSNLHRGGKAEKVKLTP---------EER 230

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268
             A  A +A+G R ++  D L    +     +E+N  PG+
Sbjct: 231 STAIRATKAMGLR-VAGVDLLRS--NHGPVVIEVNSSPGL 267


>gi|319400937|gb|EFV89156.1| biotin carboxylase [Staphylococcus epidermidis FRI909]
          Length = 452

 Score = 36.2 bits (82), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 23/89 (25%), Positives = 44/89 (49%), Gaps = 8/89 (8%)

Query: 92  DKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP----PYVIKPLKGGSSLGIIVIKK- 146
           DK+ ++Q V   GVPV P       ++D   L++     P V+K   GG   GI ++K+ 
Sbjct: 114 DKITARQTVKQAGVPVIPGSNDAVQSVDEIKLLAKEIGFPVVLKVASGGGGKGIRIVKEA 173

Query: 147 ---DQSIPLDLLQSSSWNHGDQLLIEQYV 172
              DQ++     +   + + D++ +E ++
Sbjct: 174 SQLDQALKEAKSEGQKYFNDDRVYVEAFI 202


>gi|254465300|ref|ZP_05078711.1| D-alanine--D-alanine ligase domain protein [Rhodobacterales
           bacterium Y4I]
 gi|206686208|gb|EDZ46690.1| D-alanine--D-alanine ligase domain protein [Rhodobacterales
           bacterium Y4I]
          Length = 303

 Score = 36.2 bits (82), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 57/239 (23%), Positives = 92/239 (38%), Gaps = 31/239 (12%)

Query: 50  KPDLAFNVLHG---NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP 106
           +P L FN++     +      V  +LE   IPYT     A   ++ K   K +++  G+P
Sbjct: 27  RPGLVFNLVEAIDRDMERAAEVLPLLEEEGIPYTGCSAAAQLATLSKTAQKCLMTRHGLP 86

Query: 107 VCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGI---IVIKKDQSIPLDLLQSSSWNHG 163
                      +    +I     +K +   +SLG+    V+   Q+   + +      +G
Sbjct: 87  TPDWPQAGPALVQLGRVI-----VKSITEHASLGMDAQSVVPGSQAA--EEITRRQTRYG 139

Query: 164 DQLLIEQYVDGIE-----LTCG----VMGDASLDVTEIAVPKSDFYSYELKY-SSLNSTH 213
                E+Y++G E     L CG    V+  A +   +          Y  K+  + +S H
Sbjct: 140 GTFFAEEYIEGREFNLSLLECGTGVRVLPPAEILFEDFEPGAPRIVDYAAKWDDTAHSYH 199

Query: 214 VLPAK--IPLDIYKEVQRLAFLAH---QAIGCRGISRSDFLFDPLSRKVFW-LEINVQP 266
             P +   P      + RLA LA    Q  G  G +R DF  D   R   W LE+N  P
Sbjct: 200 HTPRRFTFPDRDSALLSRLAELAQRIWQVFGLSGYARVDFRVDEGGRP--WILEVNTNP 256


>gi|52785752|ref|YP_091581.1| hypothetical protein BLi01996 [Bacillus licheniformis ATCC 14580]
 gi|163119460|ref|YP_079165.2| hypothetical protein BL05185 [Bacillus licheniformis ATCC 14580]
 gi|319645669|ref|ZP_07999900.1| hypothetical protein HMPREF1012_00934 [Bacillus sp. BT1B_CT2]
 gi|52348254|gb|AAU40888.1| hypothetical protein BLi01996 [Bacillus licheniformis ATCC 14580]
 gi|145902967|gb|AAU23527.2| hypothetical protein BL05185 [Bacillus licheniformis ATCC 14580]
 gi|317392216|gb|EFV73012.1| hypothetical protein HMPREF1012_00934 [Bacillus sp. BT1B_CT2]
          Length = 478

 Score = 36.2 bits (82), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 6/63 (9%)

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
           LV+ FT+D   L    Y++  LK G S+G+I  +K   I ++++Q        Q LI QY
Sbjct: 12  LVSNFTIDKSKLKQSQYMLSLLKEGQSVGVITSEKAYKIQVEIMQIL------QRLIGQY 65

Query: 172 VDG 174
             G
Sbjct: 66  TKG 68


>gi|110597169|ref|ZP_01385458.1| Carbamoyl-phosphate synthase L chain, ATP-binding [Chlorobium
           ferrooxidans DSM 13031]
 gi|110341360|gb|EAT59825.1| Carbamoyl-phosphate synthase L chain, ATP-binding [Chlorobium
           ferrooxidans DSM 13031]
          Length = 397

 Score = 36.2 bits (82), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 24/103 (23%), Positives = 54/103 (52%), Gaps = 4/103 (3%)

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-QHL--ISPPYVIKPLKG 135
           ++   + A+ +S++K   +Q +   G+ V P+ +  RF  ++ +H   I  P VIKP+  
Sbjct: 92  FSSISVEAADVSVNKWLQRQRMKEAGLSV-PAFMPFRFPDEAARHAAEIGFPVVIKPIDS 150

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
             S G+  ++  + +     ++   +     L+E+YV+G+E++
Sbjct: 151 AGSRGVRFVRSAEEVMQAATEALDASRSKIGLVEEYVEGLEVS 193


>gi|319405739|emb|CBI79362.1| Biotin carboxylase [Bartonella sp. AR 15-3]
          Length = 452

 Score = 36.2 bits (82), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 44/218 (20%), Positives = 90/218 (41%), Gaps = 19/218 (8%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP----SILVN 114
           +G   E+     +LE   I +         +  DK+ +K+     G+PV P    +I+  
Sbjct: 82  YGFLSENAKFADVLEAHNITFIGPTAAHIRIMGDKIEAKKTAKDLGIPVVPGSNEAIVEE 141

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG----DQLLIEQ 170
           +  +   + I  P +IK   GG   G+ V+  +Q +   L  + S  +     D + IE+
Sbjct: 142 KEALRIANEIGYPVIIKASAGGGGRGMKVVHSEQKLLTALKTARSEANAAFNDDSVYIEK 201

Query: 171 YVDG---IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227
           Y++    IE+   V+GD + +   +            K     ++ VL         K++
Sbjct: 202 YLEKPRHIEIQ--VIGDGAGNAIHLGERDCSLQRRHQKVWEEATSPVLNET----ERKKI 255

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             +   A   +  RG    +FL++  + + +++E+N +
Sbjct: 256 GNIVANACAKLRYRGAGTIEFLYE--NGEFYFIEMNTR 291


>gi|149200147|ref|ZP_01877171.1| phosphoribosylaminoimidazole carboxylase ATPase subunit
           [Lentisphaera araneosa HTCC2155]
 gi|149136788|gb|EDM25217.1| phosphoribosylaminoimidazole carboxylase ATPase subunit
           [Lentisphaera araneosa HTCC2155]
          Length = 372

 Score = 36.2 bits (82), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 43/176 (24%), Positives = 84/176 (47%), Gaps = 15/176 (8%)

Query: 92  DKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL-ISPPYVIKPLKGGSSLGIIVIKKDQSI 150
           DK+  KQ +   G+   P+ +    T D+       P V K  KGG     +++ KD+S 
Sbjct: 100 DKLLQKQCIEEAGLST-PAFI--ELTEDADFAKFGFPLVQKTRKGGYDGKGVLVMKDESA 156

Query: 151 PLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLN 210
            ++ L         + ++E+ VD +E+  GVM    +D   ++ P ++  +++ + + L+
Sbjct: 157 LVEKLPG-------ECMLEKMVD-LEMELGVMVARGIDGELVSYPVTEM-TFDDRSNILD 207

Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
              ++PA+I  D+  + + LA    +A+G  GI   +   D    +VF  E+  +P
Sbjct: 208 LC-IVPARISADLEVKARTLAEKTIEALGGVGIYGVEMFVDKQG-EVFVNEVAPRP 261


>gi|119494142|ref|XP_001263981.1| hypothetical protein NFIA_007600 [Neosartorya fischeri NRRL 181]
 gi|119412143|gb|EAW22084.1| conserved hypothetical protein [Neosartorya fischeri NRRL 181]
          Length = 663

 Score = 36.2 bits (82), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 3/74 (4%)

Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG-VMGDA 185
           P ++KP  G SS G+  ++   + P  +    +  HG + ++E Y DG E+    V+ D 
Sbjct: 356 PLIVKPCDGWSSEGVSRVESPDAFPAAIKSIDTSRHGTEFVMEPYCDGPEVDVNLVLLDG 415

Query: 186 SLDVTEIA--VPKS 197
            +   EI   +PKS
Sbjct: 416 QVLFAEICDDLPKS 429


>gi|124010164|ref|ZP_01694822.1| methylcrotonoyl-CoA carboxylase alpha chain [Microscilla marina
           ATCC 23134]
 gi|123983812|gb|EAY24229.1| methylcrotonoyl-CoA carboxylase alpha chain [Microscilla marina
           ATCC 23134]
          Length = 664

 Score = 36.2 bits (82), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 40/182 (21%), Positives = 81/182 (44%), Gaps = 13/182 (7%)

Query: 93  KMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPL--KGGSSLGIIVIKK 146
           K  +K ++    VPV P       + ++     H I  P ++K     GG  + I+   K
Sbjct: 116 KSNAKTIMKQNEVPVIPGYQGADQSTETLSQAAHDIGFPVLLKATAGGGGKGMRIVHTAK 175

Query: 147 DQSIPLDLLQSSSWNH--GDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYE 203
           + +  +D  +  + N    D+L+IE+Y+  G  +   ++GD    V  I   +    + +
Sbjct: 176 ELNGAIDAAKREAQNAFGNDELIIEKYIASGRHIEFQILGDQHGKVVHILEREC---TIQ 232

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            +Y  +      P   P ++ +++   A  A QA+        +F+FD  S++ ++LE+N
Sbjct: 233 RRYQKVIEESPSPVLTP-ELRQKMGEAALKAAQALNYDNAGTVEFIFDDQSQQFYFLEVN 291

Query: 264 VQ 265
            +
Sbjct: 292 TR 293


>gi|89075331|ref|ZP_01161753.1| putative ribosomal protein S6 modification protein [Photobacterium
           sp. SKA34]
 gi|89048880|gb|EAR54449.1| putative ribosomal protein S6 modification protein [Photobacterium
           sp. SKA34]
          Length = 271

 Score = 35.8 bits (81), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 44/194 (22%), Positives = 90/194 (46%), Gaps = 22/194 (11%)

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSLG 140
           +A + S DK+RS Q++S  GV +  +   ++   D   LI      P VIK L+G   +G
Sbjct: 63  IAISRSRDKLRSLQLLSRKGVGMPVTGFASKPD-DVPDLIKMVGGAPLVIKLLEGTQGIG 121

Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD---GIELTCGVMGDASLDVTEIAVPKS 197
            +V+ + Q     ++++      + +++++Y+    G ++ C V+GD  +   +    + 
Sbjct: 122 -VVLAETQKAAESVIEAFMGLKAN-IMVQEYIKEAGGADIRCFVIGDKVIASMKRQAAEG 179

Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
           +F S   +  S +   + P         E ++ A  A +A+G   ++  D L    +R  
Sbjct: 180 EFRSNLHRGGSASLIRITP---------EERKTAIAAAKAMGL-SVAGVDLLRS--NRGP 227

Query: 258 FWLEINVQPGMTPV 271
             +E+N  PG+  +
Sbjct: 228 LIMEVNSSPGLEGI 241


>gi|88855167|ref|ZP_01129832.1| putative acetyl-CoA carboxylase alpha subunit [marine
           actinobacterium PHSC20C1]
 gi|88815695|gb|EAR25552.1| putative acetyl-CoA carboxylase alpha subunit [marine
           actinobacterium PHSC20C1]
          Length = 675

 Score = 35.8 bits (81), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 34/138 (24%), Positives = 62/138 (44%), Gaps = 11/138 (7%)

Query: 47  AHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103
           AH    +  + +H  +G   E+  +        I +   G+ A  +  DK+ SK+ V+  
Sbjct: 64  AHAVAGMNADAVHPGYGFLSENAQLAEACAAAGITFIGPGVEALEIMGDKIASKKHVTER 123

Query: 104 GVPVCPSILVNRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSI--PLDLLQ- 156
           GV V P I     T D    +   +  P +IKP  GG   G+ ++++  ++   LD  + 
Sbjct: 124 GVAVIPGIAEPGMTNDDLVAAAAEVGFPLLIKPSAGGGGKGMTIVREPDAVAGALDSARR 183

Query: 157 -SSSWNHGDQLLIEQYVD 173
            +S+    D L +E+ V+
Sbjct: 184 VASAAFGDDTLFLERLVE 201


>gi|317123313|ref|YP_004097425.1| carbamoyl-phosphate synthase L chain ATP-binding protein
           [Intrasporangium calvum DSM 43043]
 gi|315587401|gb|ADU46698.1| Carbamoyl-phosphate synthase L chain ATP-binding protein
           [Intrasporangium calvum DSM 43043]
          Length = 1861

 Score = 35.8 bits (81), Expect = 7.2,   Method: Composition-based stats.
 Identities = 41/184 (22%), Positives = 74/184 (40%), Gaps = 15/184 (8%)

Query: 92  DKMRSKQVVSSCGVPVCP----SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147
           DK+ SK +    GVPV P     +       ++   I  P ++K   GG   GI  ++ D
Sbjct: 126 DKIGSKLIAEEVGVPVAPWSRGGVDTLEEATEAAARIGYPLMLKATAGGGGRGIRKVESD 185

Query: 148 QSIPLDLLQSS-----SWNHGDQLLIEQYVDGIE-LTCGVMGDASLDVTEIAVPKSDFYS 201
             +     ++      ++  G  + +E+ V G   +   V+GD       + V       
Sbjct: 186 AELTEAYERTRDEAARAFGSG-VVFLEKLVTGARHIEVQVIGDGQGTAWAVGVRDCSVQR 244

Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
              K    +++ VL A    ++    +RLA     A+G  G    +FL+ P  +   +LE
Sbjct: 245 RNQKVIEESASPVLSADEAAEVRTAAERLAV----AVGYAGAGTVEFLYHPAEKFFAFLE 300

Query: 262 INVQ 265
           +N +
Sbjct: 301 VNTR 304


>gi|261199396|ref|XP_002626099.1| carboxylase:pyruvate/acetyl-CoA/propionyl-CoA [Ajellomyces
           dermatitidis SLH14081]
 gi|239594307|gb|EEQ76888.1| carboxylase:pyruvate/acetyl-CoA/propionyl-CoA [Ajellomyces
           dermatitidis SLH14081]
          Length = 671

 Score = 35.8 bits (81), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 24/115 (20%), Positives = 56/115 (48%), Gaps = 14/115 (12%)

Query: 88  ALSMDKMRSKQVVSSCGVPVCPSI--------LVNRFTMDSQHLISPPYVIKPLKGGSSL 139
           A + DK+++K++  +CGVP+  ++        L++RF  +    +  P ++K + GG   
Sbjct: 116 ARTGDKLQAKELAEACGVPILKAMKTPTNDINLISRFAAE----VGYPVMVKAVDGGGGR 171

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG--IELTCGVMGDASLDVTEI 192
           GI  +K    +   L +++  +   ++ +E+   G    +   ++GD +  V  +
Sbjct: 172 GIRFVKGPDELQSALDRATGESPSKKVFVEKAAVGGFHHVEVQIIGDGTGQVRHL 226


>gi|332671062|ref|YP_004454070.1| carbamoyl-phosphate synthase L chain ATP-binding protein
           [Cellulomonas fimi ATCC 484]
 gi|332340100|gb|AEE46683.1| Carbamoyl-phosphate synthase L chain ATP-binding protein
           [Cellulomonas fimi ATCC 484]
          Length = 717

 Score = 35.8 bits (81), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 48/105 (45%), Gaps = 12/105 (11%)

Query: 77  IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP-----PYVIK 131
           I +   G+ A  +  DK+R+K  VS+ GVPV P       T D    +       P ++K
Sbjct: 115 IVFVGPGVRALDVMGDKIRAKDHVSAAGVPVIPGAP---LTDDEDPAVVAARVGYPLLVK 171

Query: 132 PLKGGSSLGIIVIKK----DQSIPLDLLQSSSWNHGDQLLIEQYV 172
           P  GG   G+ V+ +    D ++      + +    D LL+E+YV
Sbjct: 172 PSAGGGGKGMTVVAEPGALDDALAASRRVARAAFGDDTLLLERYV 216


>gi|124485095|ref|YP_001029711.1| ornithine carbamoyltransferase [Methanocorpusculum labreanum Z]
 gi|124362636|gb|ABN06444.1| protein of unknown function DUF201 [Methanocorpusculum labreanum Z]
          Length = 301

 Score = 35.8 bits (81), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 71/300 (23%), Positives = 123/300 (41%), Gaps = 68/300 (22%)

Query: 1   MAVLMGGISSEREVSLS-SGKACASAL----EDAGFKV---SQIDVDRSVGLVLAHLKPD 52
           M VL+   ++ R+ +L+  GKA  SAL    E  G  V   +  D D  +    A L PD
Sbjct: 1   MTVLIAEYTAVRDPALAPEGKAMVSALKKSFEACGHTVVMPTGSDFDAEI----ARLAPD 56

Query: 53  LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
             +          GLV A  E+L   YTH+  LA+    +       V+ C        L
Sbjct: 57  CEY----------GLVIAPDEVLA-KYTHTLELAT---HNIGSDSTAVAVCASKRLSGKL 102

Query: 113 VNRFTMDSQHLISPPY----VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168
           + +  +D    +   Y    VIKP+KG  S+G + I KD  +P           GD  + 
Sbjct: 103 LAKVGIDVPAEVPADYPGKRVIKPIKGAGSVG-VRIAKDGELP-----------GDGEMS 150

Query: 169 EQYVDGIELTCGVMGDASLDVTEIAVPKSDFYS-------------YELKYSSLNSTHVL 215
            +Y++G   +  ++G      + +      FYS              E++     + H  
Sbjct: 151 VEYLEGEHFSVSIIG------SRVVGEACGFYSGLPPIFLTINRQLCEVREDGTFAYH-- 202

Query: 216 PAKIPLDIYKEVQ--RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273
             + P+   +E +   +A  A + +GC+G    D +   +  K++ +++N +P M+ + I
Sbjct: 203 GGETPVHPPREAEMIEVAKKAIETLGCQGYVGLDMI---VGEKIWVVDVNPRPTMSILGI 259


>gi|295836736|ref|ZP_06823669.1| acetyl/propionyl-CoA carboxylase, alpha subunit [Streptomyces sp.
           SPB74]
 gi|295826182|gb|EDY44540.2| acetyl/propionyl-CoA carboxylase, alpha subunit [Streptomyces sp.
           SPB74]
          Length = 668

 Score = 35.8 bits (81), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 46/89 (51%), Gaps = 8/89 (8%)

Query: 92  DKMRSKQVVSSCGVPVCP----SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147
           DK+R+K+ V   GVPV P    S L +    D+   I  P ++KP  GG   G+ ++ ++
Sbjct: 120 DKIRAKETVRLAGVPVVPGSSGSGLDDEELADAAREIGMPVLLKPSAGGGGKGMRLVHEE 179

Query: 148 QSIPLDLL----QSSSWNHGDQLLIEQYV 172
             +  ++     ++ S    D LL+E++V
Sbjct: 180 ALLAEEIAAARREARSSFGDDTLLVERWV 208


>gi|310640316|ref|YP_003945074.1| phosphoribosylaminoimidazole carboxylase, atpase subunit
           [Paenibacillus polymyxa SC2]
 gi|309245266|gb|ADO54833.1| Phosphoribosylaminoimidazole carboxylase, ATPase subunit
           [Paenibacillus polymyxa SC2]
          Length = 391

 Score = 35.8 bits (81), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 34/159 (21%), Positives = 75/159 (47%), Gaps = 14/159 (8%)

Query: 90  SMDKMRSKQVVSSCGVPVCP--SILVNRFTMDSQHLISPPYVIKPLKGG-SSLGIIVIKK 146
           +  ++R K+ + + GVPV P   I  +   + +   +  P V+K   GG    G +V+++
Sbjct: 110 TQHRLREKRSIEAAGVPVAPYREISSSADMVQAVAELGVPCVLKTAVGGYDGKGQVVVRQ 169

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC--GVMGDASLDVTEIAVPKSDFYSYEL 204
            +       Q +    G +L++EQ+   I   C   V+   S +    A P ++     +
Sbjct: 170 SEEATNAYEQLAG--SGSELVLEQF---IRFRCEISVIVARSTNGEAKAFPPAE----NI 220

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
             +++  T ++PA++P  + +E ++LA    +++   G+
Sbjct: 221 HVNNILHTSIVPARVPEPVQEEARKLALAVAESLDAVGL 259


>gi|311032130|ref|ZP_07710220.1| hypothetical protein Bm3-1_16599 [Bacillus sp. m3-13]
          Length = 393

 Score = 35.8 bits (81), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 58/120 (48%), Gaps = 5/120 (4%)

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +L N   + ++ LI    +I+ + GG S  I VIK      +D  ++  +N G    +EQ
Sbjct: 196 VLDNNGNIINKDLIDKRILIQDI-GGLSTDIAVIKNRN---VDDDKAQGFNLGVSEALEQ 251

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
             + I    G+  D+  DV EI   K+D  ++ +   S  S H +  +I LD+ K+  RL
Sbjct: 252 IREEIRSKHGIELDSRRDVVEIITKKND-RNHIMVRGSRTSVHDITDRILLDLAKKQYRL 310


>gi|294946793|ref|XP_002785169.1| Alanine-anticapsin ligase bacD, putative [Perkinsus marinus ATCC
           50983]
 gi|239898731|gb|EER16965.1| Alanine-anticapsin ligase bacD, putative [Perkinsus marinus ATCC
           50983]
          Length = 260

 Score = 35.8 bits (81), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 50/219 (22%), Positives = 94/219 (42%), Gaps = 45/219 (20%)

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP-------PYVIKPLKGGSSLGI- 141
           + DK ++++ +   G+P         F +  +  I P       P V+KP+ G +SLG+ 
Sbjct: 41  ARDKYKTREALERHGLP-----RTTHFLISCEDDIEPAGDFVGYPAVMKPVSGAASLGVK 95

Query: 142 ---------IVIKKDQSIPLDLLQSSSW-----NHGDQ------------LLIEQYVDGI 175
                     V ++ Q +  +L+ SS        H D             +++E+Y+DG 
Sbjct: 96  KVNSHEELLAVYRETQQLLSELVVSSGALERKNEHSDPDAVAAAGRISTVVILEEYLDGQ 155

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
           E+   V+    L  T  AV   +  + E  +S   +  V+P+ +P D   ++  LA  + 
Sbjct: 156 EVDVDVVLSPGLGCT-FAVVTDNAPTKEPYFS--ETWGVIPSALPRDRCDQLVDLAVSSV 212

Query: 236 QAIGC-RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273
           +A+G   G+   +  +   SR    +E+N + G  PV +
Sbjct: 213 KALGFDSGVFHVEAKY--TSRGPRLIEVNARMGGGPVHL 249


>gi|90581267|ref|ZP_01237064.1| putative ribosomal protein S6 modification protein [Vibrio angustum
           S14]
 gi|90437506|gb|EAS62700.1| putative ribosomal protein S6 modification protein [Vibrio angustum
           S14]
          Length = 300

 Score = 35.8 bits (81), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 44/194 (22%), Positives = 90/194 (46%), Gaps = 22/194 (11%)

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSLG 140
           +A + S DK+RS Q++S  GV +  +   ++   D   LI      P VIK L+G   +G
Sbjct: 92  IAISRSRDKLRSLQLLSRKGVGMPVTGFASKPD-DVPDLIKMVGGAPLVIKLLEGTQGIG 150

Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD---GIELTCGVMGDASLDVTEIAVPKS 197
            +V+ + Q     ++++      + +++++Y+    G ++ C V+GD  +   +    + 
Sbjct: 151 -VVLAETQKAAESVIEAFMGLKAN-IMVQEYIKEAGGADIRCFVIGDKVIASMKRQAAEG 208

Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
           +F S   +  S +   + P         E ++ A  A +A+G   ++  D L    +R  
Sbjct: 209 EFRSNLHRGGSASLIRITP---------EERKTAIAAAKAMGL-SVAGVDLLRS--NRGP 256

Query: 258 FWLEINVQPGMTPV 271
             +E+N  PG+  +
Sbjct: 257 LIMEVNSSPGLEGI 270


>gi|260892280|ref|YP_003238377.1| carbamoyl-phosphate synthase, large subunit [Ammonifex degensii
           KC4]
 gi|260864421|gb|ACX51527.1| carbamoyl-phosphate synthase, large subunit [Ammonifex degensii
           KC4]
          Length = 1075

 Score = 35.8 bits (81), Expect = 8.4,   Method: Composition-based stats.
 Identities = 57/235 (24%), Positives = 104/235 (44%), Gaps = 21/235 (8%)

Query: 42  VGLVLAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSK 97
           V  VL   +PD     L G  G +  V+     +L+ L +    + +     + D+   K
Sbjct: 74  VAKVLRKERPDGLLPTLGGQVGLNLAVELSRMGVLDELGVELLGTPLETIEKAEDRELFK 133

Query: 98  QVVSSCGVPVCPSILVNRF--TMDSQHLISPPYVIKPLK--GGSSLGIIVIKKDQSIPLD 153
           + + + G P+  S +V+R    +     I  P V++P    GG+  GI    +++   L+
Sbjct: 134 ETMRAIGEPIPESRIVSRLEDAVSFAREIGFPVVVRPAYTLGGTGGGI---ARNEEELLE 190

Query: 154 LLQSSSWNHG--DQLLIEQYVDGI-ELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSL 209
           +  +    H    Q+L+EQ V G  E+   VM D + + +T   +   D     +   + 
Sbjct: 191 I-AARGLKHSLIGQILVEQCVSGWKEIEFEVMRDGADNCITVCCMENLD----PMGIHTG 245

Query: 210 NSTHVLPAKIPLDI-YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
           +S  V P++   D  Y+ ++R A    +A+G RG     F  DP S + + +E+N
Sbjct: 246 DSIVVAPSQTLTDKEYQMLRRAAIKIIRALGIRGGCNIQFALDPRSLRYYVIEVN 300


>gi|312885070|ref|ZP_07744758.1| Vibrioferrin biosynthesis protein PvsA [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309367280|gb|EFP94844.1| Vibrioferrin biosynthesis protein PvsA [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 404

 Score = 35.8 bits (81), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 23/98 (23%), Positives = 50/98 (51%), Gaps = 4/98 (4%)

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS 149
           + +K  ++QV+    +P  PS+L+++  +     ++ P V KP +G +S+   V + D +
Sbjct: 112 AKNKHFTRQVLDEKSLPSTPSLLLHQGDLSQSRTLNLPVVAKPKEGVASMD--VQRCDSN 169

Query: 150 IPLDLLQSSSWNH--GDQLLIEQYVDGIELTCGVMGDA 185
             L+    + W       +L+E+++ G  +T   +GD 
Sbjct: 170 AALESYCETFWQKYPTSPVLVEEFLQGPLITIETLGDG 207


>gi|119186247|ref|XP_001243730.1| hypothetical protein CIMG_03171 [Coccidioides immitis RS]
          Length = 655

 Score = 35.8 bits (81), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 26/104 (25%), Positives = 50/104 (48%), Gaps = 4/104 (3%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +H +  P +IKP  G  S G+  ++    +        +  HG + +IE+Y +G E+   
Sbjct: 348 EHHLEFPLIIKPCNGFLSEGVFRVENLSQLEAGAQAIDTDRHGKEFVIEKYCEGPEVDAN 407

Query: 181 -VMGDASLDVTEIA--VPK-SDFYSYELKYSSLNSTHVLPAKIP 220
            V+ D  +   E++   PK +D  S+    + +   +VLP+ +P
Sbjct: 408 VVLCDGEVIFFEVSDDFPKGADANSHGTVKNFIELANVLPSALP 451


>gi|320039028|gb|EFW20963.1| conserved hypothetical protein [Coccidioides posadasii str.
           Silveira]
          Length = 676

 Score = 35.8 bits (81), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 26/104 (25%), Positives = 50/104 (48%), Gaps = 4/104 (3%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +H +  P +IKP  G  S G+  ++    +        +  HG + +IE+Y +G E+   
Sbjct: 367 EHHLEFPLIIKPCNGFLSEGVFRVENLSQLEAGAQAIDTDRHGKEFVIEKYCEGPEVDAN 426

Query: 181 -VMGDASLDVTEIA--VPK-SDFYSYELKYSSLNSTHVLPAKIP 220
            V+ D  +   E++   PK +D  S+    + +   +VLP+ +P
Sbjct: 427 VVLCDGEVIFFEVSDDFPKGADANSHGTVKNFIELANVLPSALP 470


>gi|303317914|ref|XP_003068959.1| hypothetical protein CPC735_009910 [Coccidioides posadasii C735
           delta SOWgp]
 gi|240108640|gb|EER26814.1| hypothetical protein CPC735_009910 [Coccidioides posadasii C735
           delta SOWgp]
          Length = 676

 Score = 35.8 bits (81), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 26/104 (25%), Positives = 50/104 (48%), Gaps = 4/104 (3%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +H +  P +IKP  G  S G+  ++    +        +  HG + +IE+Y +G E+   
Sbjct: 367 EHHLEFPLIIKPCNGFLSEGVFRVENLSQLEAGAQAIDTDRHGKEFVIEKYCEGPEVDAN 426

Query: 181 -VMGDASLDVTEIA--VPK-SDFYSYELKYSSLNSTHVLPAKIP 220
            V+ D  +   E++   PK +D  S+    + +   +VLP+ +P
Sbjct: 427 VVLCDGEVIFFEVSDDFPKGADANSHGTVKNFIELANVLPSALP 470


>gi|319786101|ref|YP_004145576.1| alpha-L-glutamate ligase, RimK family [Pseudoxanthomonas suwonensis
           11-1]
 gi|317464613|gb|ADV26345.1| alpha-L-glutamate ligase, RimK family [Pseudoxanthomonas suwonensis
           11-1]
          Length = 295

 Score = 35.8 bits (81), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 40/187 (21%), Positives = 81/187 (43%), Gaps = 24/187 (12%)

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS---PPYVIKPLKGGSSLGIIVIKK 146
           S DK+R+ Q++++ G+ +  ++  +        L     PP+V+K  +G    G+++ +K
Sbjct: 97  SRDKLRAHQLLAAQGIDLPTTVFGDSPDDTDDLLSLLGPPPHVVKLNEGTQGAGVVLTEK 156

Query: 147 DQS--IPLDLLQSSSWNHGDQLLIEQYVD---GIELTCGVMGDASLDVTEIAVPKSDFYS 201
             +    ++ L+    N     L++++V    G +L C V+GD  +        + +F S
Sbjct: 157 ASASRATVEALRGLYAN----FLVQEFVAEALGADLRCFVVGDRVVAAMRRQAAEGEFRS 212

Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
                    + H      P +     Q +A  + QA+G   ++  D +     R    LE
Sbjct: 213 ---------NLHRGGQASPAEASAREQEVAVRSAQALGLE-VAGVDLIAS--GRGPLVLE 260

Query: 262 INVQPGM 268
           +N  PG+
Sbjct: 261 VNSTPGL 267


>gi|149184451|ref|ZP_01862769.1| carbamoyl-phosphate synthase large subunit [Erythrobacter sp.
           SD-21]
 gi|148831771|gb|EDL50204.1| carbamoyl-phosphate synthase large subunit [Erythrobacter sp.
           SD-21]
          Length = 1108

 Score = 35.8 bits (81), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 41/151 (27%), Positives = 71/151 (47%), Gaps = 18/151 (11%)

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN-HGDQ-LLIEQYV-DGIELTC 179
           L+ P YV+    GG ++ I+    D    LD   +++ N  GD  +L++QY+ D +E   
Sbjct: 749 LLRPSYVL----GGRAMEIV----DSEPQLDDYINTAVNVSGDSPVLVDQYLRDAVECDV 800

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAI 238
            V+ D S    E+ +     +  E    S +S   LP   +P DI +E++R A    +A+
Sbjct: 801 DVVSDGS----EVRIAGVMQHIEEAGVHSGDSACTLPPYSLPADIVEEMERQAKALAEAL 856

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
             RG+    F       +V+ +E+N +   T
Sbjct: 857 EVRGLMNVQFAVK--DGEVYLIEVNPRASRT 885


>gi|193216335|ref|YP_001997534.1| carbamoyl-phosphate synthase L chain ATP-binding [Chloroherpeton
           thalassium ATCC 35110]
 gi|193089812|gb|ACF15087.1| Carbamoyl-phosphate synthase L chain ATP-binding [Chloroherpeton
           thalassium ATCC 35110]
          Length = 485

 Score = 35.4 bits (80), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 40/189 (21%), Positives = 86/189 (45%), Gaps = 24/189 (12%)

Query: 92  DKMRSKQVVSSCGVPVCPSIL-------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
           DK+R+K+      VPV P +        + ++  D    ++ P +IK   GG   G++ +
Sbjct: 118 DKIRAKKTAVEANVPVIPGVNNPKSPDDIRKWMKDED--VAYPIMIKATAGGGGKGMVRV 175

Query: 145 KKDQSIPLDLLQSSSW---NHGDQ-LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDF 199
           +++  +     Q+ S    + GD+ +L+E+++     +   ++ D+  +V  +       
Sbjct: 176 QQECELEGAFQQAKSEAKKSFGDEEVLVEKFIQKSRHIEVQIVADSHGNVIHL------- 228

Query: 200 YSYELKYSSLNSTHVLPAKIPL---DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256
           +  E      N   +  A  P    +I +++ + A    +AIG       +FLFD  ++K
Sbjct: 229 FERECTIQRRNQKVIEEAPSPSITPEIRQDICQTAVRLMKAIGYTSAGTVEFLFDADTQK 288

Query: 257 VFWLEINVQ 265
            ++LE+N +
Sbjct: 289 FYFLEVNTR 297


>gi|327294976|ref|XP_003232183.1| hypothetical protein TERG_07035 [Trichophyton rubrum CBS 118892]
 gi|326465355|gb|EGD90808.1| hypothetical protein TERG_07035 [Trichophyton rubrum CBS 118892]
          Length = 669

 Score = 35.4 bits (80), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 22/81 (27%), Positives = 41/81 (50%), Gaps = 3/81 (3%)

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
           ++H +  P ++KP  G SS G+  +   +++ L +    +  HG + ++E Y  G E   
Sbjct: 355 NKHDLQYPLIVKPCDGWSSEGVSRVDTPEALALAIKSIDASRHGTEFVMEPYCSGPEFDA 414

Query: 180 G-VMGDASLDVTEIA--VPKS 197
             V+ D  +  +EI   +PKS
Sbjct: 415 NFVLLDGEVLFSEICDDLPKS 435


>gi|34557492|ref|NP_907307.1| urea amidolyase-related protein [Wolinella succinogenes DSM 1740]
 gi|34483209|emb|CAE10207.1| UREA AMIDOLYASE-RELATED PROTEIN [Wolinella succinogenes]
          Length = 1200

 Score = 35.4 bits (80), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 38/181 (20%), Positives = 74/181 (40%), Gaps = 12/181 (6%)

Query: 93  KMRSKQVVSSCGVPVCPS--ILVNRFTMDSQ-HLISPPYVIKPLKGGSSLGIIVIKKDQS 149
           K  ++++    GVP+ P   +L +     S+   I  P ++K   GG  +G+ +   +Q 
Sbjct: 116 KHTARELAIQSGVPLLPGSGLLSDLLEAKSEAKRIGYPVMLKSTAGGGGIGMQLCSNEQE 175

Query: 150 IPLDLL--QSSSWNH--GDQLLIEQYVDGIE-LTCGVMGDASLDVTEIAVPKSDFYSYEL 204
           +    L  +  S NH     + +E+YV     +   V GD    VT +            
Sbjct: 176 LEESFLTVKRLSENHFANSGVFLEKYVSTAHHIEVQVFGDRKGKVTILGDRDCSLQRRNQ 235

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K         L  +    +Y   ++L     +++        +F++DPL +K ++LE+N 
Sbjct: 236 KVVEETPAPHLSQECRESLYACAKKLM----ESVSYLSAGTVEFIYDPLEQKFYFLEVNT 291

Query: 265 Q 265
           +
Sbjct: 292 R 292


>gi|229822078|ref|YP_002883604.1| phosphoribosylamine/glycine ligase [Beutenbergia cavernae DSM
           12333]
 gi|229567991|gb|ACQ81842.1| phosphoribosylamine/glycine ligase [Beutenbergia cavernae DSM
           12333]
          Length = 433

 Score = 35.4 bits (80), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 37/151 (24%), Positives = 66/151 (43%), Gaps = 11/151 (7%)

Query: 77  IPYTHSGILASALSMDKMRSKQVVSSCGVP-----VCPSILVNRFTMDSQHLISPPYVIK 131
           IP       A+ L   K  +K+++++ GVP     VC +       +D+     PPYV+K
Sbjct: 87  IPVFGPDAAAARLEGSKAFAKEIMAAAGVPTAMAHVCTTPDEVAAALDA---FGPPYVVK 143

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
                +  G++V    ++     L     +    ++IE+++DG E++   + D   +V  
Sbjct: 144 DDGLAAGKGVVVTSDREAAVEHALACVRRSRRSAVVIEEFLDGPEVSLFCLSDGE-NVVP 202

Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLD 222
           +A P  DF       +  N T  + A  PLD
Sbjct: 203 LA-PAQDFKRLGDDDAGPN-TGGMGAYTPLD 231


>gi|294892195|ref|XP_002773942.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
 gi|239879146|gb|EER05758.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
          Length = 542

 Score = 35.4 bits (80), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 54/242 (22%), Positives = 103/242 (42%), Gaps = 47/242 (19%)

Query: 67  LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP 126
           +V  + E   +P     ++ +A   DK ++++ +   G+P         F +  +  I P
Sbjct: 185 MVARLTEAFGLPGPGPHVVEAA--RDKYKTREALERHGLP-----RTTHFLISCEDDIEP 237

Query: 127 -------PYVIKPLKGGSSLGI----------IVIKKDQSIPLDLLQSSSW-----NHGD 164
                  P V+KP+ G +SLG+           V ++ Q +  +L+ SS        H D
Sbjct: 238 AGDFVGYPAVMKPVSGAASLGVKKVNSHEELLAVYRETQQLLSELVVSSGALERKNEHSD 297

Query: 165 Q------------LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212
                        +++E+Y+DG E+   V+    L  T  AV   +  + E  +S   + 
Sbjct: 298 PDAVAAAGRISTVVILEEYLDGQEVDVDVVLSPGLGCT-FAVVTDNAPTKEPYFS--ETW 354

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271
            V+P+ +P D   ++  LA  + +A+G   G+   +  +   SR    +E+N + G  PV
Sbjct: 355 GVIPSALPRDRCDQLVDLAVSSVKALGFDSGVFHVEAKY--TSRGPRLIEVNARMGGGPV 412

Query: 272 SI 273
            +
Sbjct: 413 HL 414


>gi|20089051|ref|NP_615126.1| hypothetical protein MA0153 [Methanosarcina acetivorans C2A]
 gi|19913910|gb|AAM03606.1| predicted protein [Methanosarcina acetivorans C2A]
          Length = 363

 Score = 35.4 bits (80), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 47/190 (24%), Positives = 80/190 (42%), Gaps = 34/190 (17%)

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145
           A  +S DK +SK+   S G+P  P     R          PPY +KP    SS+G  +I 
Sbjct: 97  AYRISRDKKKSKEYFRSIGIPT-PQDKPGR----------PPYFVKPPCESSSVGARIIY 145

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205
                     +         +L+E+YV+G  ++  V+GD     T  AV K      +  
Sbjct: 146 D---------EEELGELEPGMLVEEYVEGEVISLEVIGDG----THFAVVKETLIHIDRT 192

Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           Y   +   V P  +P D+    + +++     +  +GI   + +  P   KV  +EI+ +
Sbjct: 193 Y---DCHMVTP--LPSDL--SFREISYSLAANLPLKGIMDVEAISGPQGLKV--IEIDSR 243

Query: 266 -PGMTPVSIF 274
            P  TP +++
Sbjct: 244 FPSQTPTAVY 253


>gi|82524025|emb|CAI78703.1| carbamoylphosphate synthase large subunit [uncultured
           Flavobacteriaceae bacterium]
          Length = 374

 Score = 35.4 bits (80), Expect = 10.0,   Method: Compositional matrix adjust.
 Identities = 36/186 (19%), Positives = 78/186 (41%), Gaps = 31/186 (16%)

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPL-KGGSSLGIIV 143
           L   L    M + Q+ +S  + + P      F  +S   I+ P++IKP    G  +GI+ 
Sbjct: 119 LNKDLLTKHMSNNQIQASKSIVIKPG---ETFKNES---INSPFLIKPTSNSGGGVGIVA 172

Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYE 203
              ++ I    +++         L+E+Y++G ++ C V+ D           K    +Y 
Sbjct: 173 FSNEKDIENYFIENK---FKINYLVEEYIEGYDICCNVLCD-----------KGKILAYT 218

Query: 204 LKYSSLNSTHVLPAKIPL------DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
           +    +    +    + L       +YK++ +L     +++   G++  D  +D  +++ 
Sbjct: 219 IHKGIMKGGKIYGPSVELLFLYDDQLYKKIVKLM----ESLNWYGVANIDIRYDERAKEF 274

Query: 258 FWLEIN 263
             +EIN
Sbjct: 275 KVIEIN 280


Searching..................................................done


Results from round 2




>gi|254781179|ref|YP_003065592.1| D-alanine--D-alanine ligase [Candidatus Liberibacter asiaticus str.
           psy62]
 gi|254040856|gb|ACT57652.1| D-alanine--D-alanine ligase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 300

 Score =  424 bits (1092), Expect = e-117,   Method: Composition-based stats.
 Identities = 299/299 (100%), Positives = 299/299 (100%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGN 61
           AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGN
Sbjct: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGN 61

Query: 62  FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ 121
           FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ
Sbjct: 62  FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ 121

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
           HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV
Sbjct: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241
           MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR
Sbjct: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR
Sbjct: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300


>gi|327194618|gb|EGE61468.1| D-alanine-D-alanine ligase protein [Rhizobium etli CNPAF512]
          Length = 337

 Score =  404 bits (1040), Expect = e-111,   Method: Composition-based stats.
 Identities = 178/303 (58%), Positives = 228/303 (75%), Gaps = 3/303 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSER VSLSSGKACA+ALE  GFKV+ IDV R V   LA LKPD+ FN LHG
Sbjct: 35  VAVLMGGFSSERPVSLSSGKACAAALEAEGFKVTCIDVARDVSEKLAALKPDVVFNALHG 94

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG +Q ILE LEIPYTHSG+LASAL+MDK ++K V ++ G+PV  S ++NRF   S
Sbjct: 95  PFGEDGTIQGILEYLEIPYTHSGVLASALAMDKDKAKLVAAAAGIPVAESQVINRFAFPS 154

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            H + PPYV+KP++ GSS G++++ +DQ+ P  ++ S  W++G+ +L+E+YV G ELTCG
Sbjct: 155 THPMKPPYVVKPVREGSSFGVVIVTEDQAHPPQVVSSPDWHYGEDVLVERYVYGRELTCG 214

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           VMGD +L VTE+     +FY Y+ KY++  S HV+PAKI  +IY+++Q LA  AHQAIGC
Sbjct: 215 VMGDVALGVTEVVPQGHNFYDYDSKYAAGGSKHVIPAKISPNIYQKIQTLALRAHQAIGC 274

Query: 241 RGISRSDFLFDP---LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           RG+SRSDF +D       ++ WLE+N QPGMTP S+ PEMA +AGYSF E L WMVEDAS
Sbjct: 275 RGVSRSDFRYDDRFSEDGEIIWLEVNTQPGMTPTSLVPEMAGHAGYSFGEFLRWMVEDAS 334

Query: 298 CLR 300
           CLR
Sbjct: 335 CLR 337


>gi|209550169|ref|YP_002282086.1| D-alanine--D-alanine ligase [Rhizobium leguminosarum bv. trifolii
           WSM2304]
 gi|209535925|gb|ACI55860.1| D-alanine/D-alanine ligase [Rhizobium leguminosarum bv. trifolii
           WSM2304]
          Length = 308

 Score =  404 bits (1039), Expect = e-111,   Method: Composition-based stats.
 Identities = 177/303 (58%), Positives = 228/303 (75%), Gaps = 3/303 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSER VSLSSGKACA ALE  GF V++IDV R V   LA LKPD+ FN LHG
Sbjct: 6   VAVLMGGFSSERPVSLSSGKACAEALEAEGFDVTRIDVARDVSEKLAALKPDVVFNALHG 65

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG +Q ILE LEIPYTHSG+LASAL+MDK ++K V ++ G+PV  S ++NRF   S
Sbjct: 66  PFGEDGTIQGILEYLEIPYTHSGVLASALAMDKDKAKLVAAAAGIPVAESQVINRFAFPS 125

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            H + PPYV+KP++ GSS G++++ +DQ+ P  ++ S  W +G+++L+E+YV G ELTCG
Sbjct: 126 THPMKPPYVVKPVREGSSFGVVIVTEDQAHPPQVVSSPEWRYGEEVLVERYVYGRELTCG 185

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           VMG+ +L VTE+     +FY Y+ KY++  S HV+PAKI  +IY+++QRLA  AHQAIGC
Sbjct: 186 VMGETALGVTEVVPQGHNFYDYDSKYAAGGSKHVIPAKISPNIYQKIQRLALRAHQAIGC 245

Query: 241 RGISRSDFLFDP---LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           RG+SRSDF +D       ++ WLE+N QPGMTP S+ PEMA +AGYSF E L WMVEDAS
Sbjct: 246 RGVSRSDFRYDDRFTEDGEIIWLEVNTQPGMTPTSLVPEMAGHAGYSFGEFLRWMVEDAS 305

Query: 298 CLR 300
           CLR
Sbjct: 306 CLR 308


>gi|307319701|ref|ZP_07599126.1| D-alanine/D-alanine ligase [Sinorhizobium meliloti AK83]
 gi|306894632|gb|EFN25393.1| D-alanine/D-alanine ligase [Sinorhizobium meliloti AK83]
          Length = 308

 Score =  404 bits (1038), Expect = e-110,   Method: Composition-based stats.
 Identities = 169/303 (55%), Positives = 224/303 (73%), Gaps = 3/303 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG SSER VSLSSG ACA ALE  G++V+++DV R V  VL  L+PD+ FN LHG
Sbjct: 6   VAVLLGGFSSERPVSLSSGTACADALEAEGYRVTRVDVGRDVAAVLQELRPDVVFNALHG 65

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG +Q ILE LEIPYTHSG+L+SAL+MDK ++K V  + G+PV  +++++R +  +
Sbjct: 66  PFGEDGTIQGILEYLEIPYTHSGVLSSALAMDKDQAKHVAKAAGIPVAEALVMDRRSFGN 125

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           QH + PPYV+KP++ GSS G++++K+DQS P  ++ SS W +GD++++E+Y+ G E TCG
Sbjct: 126 QHPMKPPYVVKPVREGSSFGVVIVKEDQSHPPQVITSSEWRYGDRVMVERYIAGREFTCG 185

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           VMGD +L VTEI      FY Y+ KY    S HV+PA+I  +IY+++Q LA  AHQAIGC
Sbjct: 186 VMGDVALGVTEIIPQGHAFYDYDSKYVKGGSKHVIPAQISPNIYQKIQTLALKAHQAIGC 245

Query: 241 RGISRSDFLFDPLS---RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           RG+SRSDF FD       ++ WLEIN QPGMTP S+ PEMA +AG  F E L WMVEDAS
Sbjct: 246 RGVSRSDFRFDDRGDGEGELIWLEINTQPGMTPTSLVPEMAQHAGLQFGEFLRWMVEDAS 305

Query: 298 CLR 300
           CLR
Sbjct: 306 CLR 308


>gi|15965924|ref|NP_386277.1| D-alanine--D-alanine ligase [Sinorhizobium meliloti 1021]
 gi|307308234|ref|ZP_07587943.1| D-alanine/D-alanine ligase [Sinorhizobium meliloti BL225C]
 gi|39930910|sp|Q92NM4|DDL_RHIME RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|15075193|emb|CAC46750.1| Probable D-alanine--D-alanine ligase B [Sinorhizobium meliloti
           1021]
 gi|306901232|gb|EFN31838.1| D-alanine/D-alanine ligase [Sinorhizobium meliloti BL225C]
          Length = 308

 Score =  403 bits (1037), Expect = e-110,   Method: Composition-based stats.
 Identities = 170/303 (56%), Positives = 224/303 (73%), Gaps = 3/303 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG SSER VSLSSG ACA ALE  G++V+++DV R V  VL  L+PD+ FN LHG
Sbjct: 6   VAVLLGGFSSERPVSLSSGTACADALEAEGYRVTRVDVGRDVAAVLQELRPDVVFNALHG 65

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG +Q ILE LEIPYTHSG+LASAL+MDK ++K V  + G+PV  +++++R +  +
Sbjct: 66  PFGEDGTIQGILEYLEIPYTHSGVLASALAMDKDQAKHVAKAAGIPVAEALVMDRRSFGN 125

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           QH + PPYV+KP++ GSS G++++K+DQS P  ++ SS W +GD++++E+Y+ G E TCG
Sbjct: 126 QHPMKPPYVVKPVREGSSFGVVIVKEDQSHPPQVITSSEWRYGDRVMVERYIAGREFTCG 185

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           VMGD +L VTEI      FY Y+ KY    S HV+PA+I  +IY+++Q LA  AHQAIGC
Sbjct: 186 VMGDVALGVTEIIPQGHAFYDYDSKYVKGGSKHVIPAQISPNIYQKIQTLALKAHQAIGC 245

Query: 241 RGISRSDFLFDPLS---RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           RG+SRSDF FD       ++ WLEIN QPGMTP S+ PEMA +AG  F E L WMVEDAS
Sbjct: 246 RGVSRSDFRFDDRGDGEGELIWLEINTQPGMTPTSLVPEMAQHAGLQFGEFLRWMVEDAS 305

Query: 298 CLR 300
           CLR
Sbjct: 306 CLR 308


>gi|222086439|ref|YP_002544973.1| D-alanine-D-alanine ligase protein [Agrobacterium radiobacter K84]
 gi|221723887|gb|ACM27043.1| D-alanine-D-alanine ligase protein [Agrobacterium radiobacter K84]
          Length = 308

 Score =  402 bits (1034), Expect = e-110,   Method: Composition-based stats.
 Identities = 171/303 (56%), Positives = 231/303 (76%), Gaps = 3/303 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG SSER VSLSSGKACA ALE  G++V+++DV+R V   LA LKPD+ FN LHG
Sbjct: 6   VAVLLGGFSSERPVSLSSGKACADALEAEGYRVTRVDVERDVSARLADLKPDVVFNALHG 65

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG +Q +LE L+IPYTHSG++ASAL+MDK R+K V +S G+PV  S+++NRF +  
Sbjct: 66  PFGEDGTIQGVLEYLQIPYTHSGVMASALAMDKARAKTVAASAGIPVAASLVLNRFDIAG 125

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +H +  PYV+KP++ GSS G++++K++Q+ P  ++ SS W +GD++++E+Y+ G ELTCG
Sbjct: 126 EHPMPAPYVVKPVREGSSFGVVIVKEEQAHPPQIIASSEWRYGDEVMVERYIHGRELTCG 185

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           VMGD +L VTEI      FY Y+ KY++  S HV+PA+I  ++Y+++Q LA  AHQAIGC
Sbjct: 186 VMGDTALGVTEIVPQGHSFYDYDSKYAAGGSKHVIPAEISPNLYQKIQLLALRAHQAIGC 245

Query: 241 RGISRSDFLFDP---LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           RG+SRSDF FD       ++ WLEIN QPGMTP S+ PEMAA+AGYSF E L WMVED+S
Sbjct: 246 RGVSRSDFRFDDRFSEEGELIWLEINTQPGMTPTSLLPEMAAHAGYSFGEFLRWMVEDSS 305

Query: 298 CLR 300
           C R
Sbjct: 306 CSR 308


>gi|218674672|ref|ZP_03524341.1| D-alanine--D-alanine ligase [Rhizobium etli GR56]
          Length = 308

 Score =  402 bits (1033), Expect = e-110,   Method: Composition-based stats.
 Identities = 176/303 (58%), Positives = 228/303 (75%), Gaps = 3/303 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSER VSLSSGKACA+ALE  GF+V+ IDV R V   LA LKPD+ FN LHG
Sbjct: 6   VAVLMGGFSSERPVSLSSGKACAAALEAEGFQVTCIDVARDVSERLAALKPDVVFNALHG 65

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG +Q ILE LEIPYTHSG+LASAL+MDK ++K V ++ G+PV  S ++NRF   S
Sbjct: 66  PFGEDGTIQGILEYLEIPYTHSGVLASALAMDKDKAKLVAAAAGIPVAESQVINRFAFPS 125

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            H + PPYV+KP++ GSS G++++ +DQ+ P  ++ S  W +G+++L+E+YV G ELTCG
Sbjct: 126 THPMKPPYVVKPVREGSSFGVVIVTEDQAHPPQIVSSPEWRYGEEVLVERYVYGRELTCG 185

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           VMG+ +L VTE+     +FY Y+ KY++  S HV+PAKI  +IY+++Q LA  AHQAIGC
Sbjct: 186 VMGETALGVTEVVPQGHNFYDYDSKYAAGGSKHVIPAKISPNIYQKIQTLAVRAHQAIGC 245

Query: 241 RGISRSDFLFDP---LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           RG+SRSDF +D       ++ WLE+N QPGMTP S+ PEMA +AGYSF E L WMVEDAS
Sbjct: 246 RGVSRSDFRYDDRFSEDGEIIWLEVNTQPGMTPTSLVPEMAGHAGYSFGEFLRWMVEDAS 305

Query: 298 CLR 300
           CLR
Sbjct: 306 CLR 308


>gi|241205551|ref|YP_002976647.1| D-alanine--D-alanine ligase [Rhizobium leguminosarum bv. trifolii
           WSM1325]
 gi|240859441|gb|ACS57108.1| D-alanine/D-alanine ligase [Rhizobium leguminosarum bv. trifolii
           WSM1325]
          Length = 308

 Score =  400 bits (1029), Expect = e-109,   Method: Composition-based stats.
 Identities = 173/303 (57%), Positives = 225/303 (74%), Gaps = 3/303 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSER VSLSSGKACA ALE  GF V++IDV R V   LA LKPD+ FN LHG
Sbjct: 6   VAVLMGGFSSERPVSLSSGKACAEALEAEGFDVTRIDVARDVSEKLAALKPDVVFNALHG 65

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG +Q ILE LEIPYTHSG+LASAL+MDK ++K V  + G+PV  S +VNRF   +
Sbjct: 66  PFGEDGTIQGILEYLEIPYTHSGVLASALAMDKDKAKLVAGAAGIPVAESQVVNRFAFPA 125

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            H + PPYV+KP++ GSS G++++ +DQ+ P  ++ S  W +G+++++E+YV G ELTCG
Sbjct: 126 THPMKPPYVVKPVREGSSFGVVIVTEDQAHPPQIVSSPEWRYGEEVIVERYVYGRELTCG 185

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           VMG+  L VTE+     +FY Y+ KY++  S HV+PAKI  +IY+++Q L+  AHQAIGC
Sbjct: 186 VMGETPLGVTEVVPQGHNFYDYDSKYAAGGSKHVIPAKISPNIYQKIQTLSLRAHQAIGC 245

Query: 241 RGISRSDFLFDP---LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           RG+SRSDF +D       ++ WLE+N QPGMTP S+ PEMA +AGYSF + L WMVEDAS
Sbjct: 246 RGVSRSDFRYDDRFSEDGEIIWLEVNTQPGMTPTSLVPEMAGHAGYSFGQFLRWMVEDAS 305

Query: 298 CLR 300
           CLR
Sbjct: 306 CLR 308


>gi|227822648|ref|YP_002826620.1| D-alanine--D-alanine ligase [Sinorhizobium fredii NGR234]
 gi|254767735|sp|C3MEM6|DDL_RHISN RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|227341649|gb|ACP25867.1| D-alanine--D-alanine ligase [Sinorhizobium fredii NGR234]
          Length = 306

 Score =  400 bits (1029), Expect = e-109,   Method: Composition-based stats.
 Identities = 173/301 (57%), Positives = 224/301 (74%), Gaps = 1/301 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSER VSLSSG ACA ALE  G++VS++DV R V  VLA L+PD+ FN LHG
Sbjct: 6   VAVLMGGFSSERPVSLSSGAACADALEAEGYRVSRVDVGRDVAAVLADLRPDIVFNALHG 65

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG +Q ILE LEIPYTHSG+LASAL+MDK ++K V  + G+PV  +++++R    +
Sbjct: 66  PFGEDGTIQGILEYLEIPYTHSGVLASALAMDKAQAKHVAKAAGIPVADALIMDRREFGN 125

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            H + PPYV+KP++ GSS G++++K+DQS P  ++ SS W +GD++++E+Y+ G ELTCG
Sbjct: 126 AHPMKPPYVVKPVREGSSFGVVIVKEDQSHPPQVITSSEWRYGDRVMVERYIAGRELTCG 185

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           VMGD +L VTEI      FY Y+ KY    S HV+PA+I  +IY+++Q LA  AHQAIGC
Sbjct: 186 VMGDVALGVTEIIPQGHAFYDYDSKYVKGGSAHVIPAQISPNIYQKIQSLAVKAHQAIGC 245

Query: 241 RGISRSDFLFDPLS-RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
           RG+SRSDF FD     ++ WLEIN QPGMTP S+ PEMA +AG  F E L WMVEDASCL
Sbjct: 246 RGVSRSDFRFDDRGEGELIWLEINTQPGMTPTSLVPEMAQHAGLQFGEFLRWMVEDASCL 305

Query: 300 R 300
           R
Sbjct: 306 R 306


>gi|218663185|ref|ZP_03519115.1| D-alanine--D-alanine ligase [Rhizobium etli IE4771]
          Length = 308

 Score =  399 bits (1027), Expect = e-109,   Method: Composition-based stats.
 Identities = 178/303 (58%), Positives = 227/303 (74%), Gaps = 3/303 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSER VSLSSGKACA+ALE  GFKV+ IDV R V   LA LKPD+ FN LHG
Sbjct: 6   VAVLMGGFSSERPVSLSSGKACAAALEAEGFKVTCIDVARDVSEKLAALKPDVVFNALHG 65

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG +Q ILE LEIPYTHSG+LASAL+MDK ++K V ++ G+PV  S +VNRF   S
Sbjct: 66  PFGEDGTIQGILEYLEIPYTHSGVLASALAMDKDKAKLVAAAAGIPVAESQVVNRFAFPS 125

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            H + PPYV+KP++ GSS G++++ +DQ+ P  ++ S  W++G+ +L+E+YV G ELTCG
Sbjct: 126 AHPMRPPYVVKPVREGSSFGVVIVTEDQAHPPQVVSSPEWHYGEDVLVERYVYGRELTCG 185

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           VMG+ +L VTE+     +FY Y+ KY+   S HV+PAKI  +IY+++Q LA  AHQAIGC
Sbjct: 186 VMGETALGVTEVVPLGHNFYDYDSKYAVGGSKHVIPAKISPNIYQKIQTLALRAHQAIGC 245

Query: 241 RGISRSDFLFDP---LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           RG+SRSDF +D       ++ WLE+N QPGMTP S+ PEMA +AGYSF E L WMVEDAS
Sbjct: 246 RGVSRSDFRYDDRFSEDGEIIWLEVNTQPGMTPTSLVPEMAGHAGYSFGEFLRWMVEDAS 305

Query: 298 CLR 300
           CLR
Sbjct: 306 CLR 308


>gi|218462241|ref|ZP_03502332.1| D-alanine--D-alanine ligase [Rhizobium etli Kim 5]
          Length = 308

 Score =  399 bits (1027), Expect = e-109,   Method: Composition-based stats.
 Identities = 178/303 (58%), Positives = 228/303 (75%), Gaps = 3/303 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSER VSLSSGKACA+ALE  GFKV+ IDV R V   LA LKPD+ FN LHG
Sbjct: 6   VAVLMGGFSSERPVSLSSGKACAAALEAEGFKVTCIDVARDVSEKLAALKPDVVFNALHG 65

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG +Q ILE LEIPYTHSG+LASAL+MDK ++K V ++ G+PV  S +VNRF   S
Sbjct: 66  PFGEDGTIQGILEYLEIPYTHSGVLASALAMDKDKAKLVAAAAGIPVAESQVVNRFAFPS 125

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            H + PPYV+KP++ GSS G++++ +DQ+ P  ++ S  W++G+++L+E+YV G ELTCG
Sbjct: 126 AHPMRPPYVVKPVREGSSFGVVIVTEDQAHPPQVVSSPEWHYGEEVLVERYVYGRELTCG 185

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           VMG+ +L VTE+     +FY Y+ KY+   S HV+PAKI  +IY+++Q LA  AHQAIGC
Sbjct: 186 VMGETALGVTEVVPLGHNFYDYDSKYAVGGSKHVIPAKISPNIYQKIQTLAVRAHQAIGC 245

Query: 241 RGISRSDFLFDP---LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           RG+SRSDF +D       ++ WLE+N QPGMTP S+ PEMA +AGYSF E L WMVEDAS
Sbjct: 246 RGVSRSDFRYDDRFSEDGEIIWLEVNTQPGMTPTSLVPEMAGHAGYSFGEFLRWMVEDAS 305

Query: 298 CLR 300
           CLR
Sbjct: 306 CLR 308


>gi|190892579|ref|YP_001979121.1| D-alanine-D-alanine ligase [Rhizobium etli CIAT 652]
 gi|190697858|gb|ACE91943.1| D-alanine-D-alanine ligase protein [Rhizobium etli CIAT 652]
          Length = 308

 Score =  399 bits (1027), Expect = e-109,   Method: Composition-based stats.
 Identities = 178/303 (58%), Positives = 227/303 (74%), Gaps = 3/303 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSER VSLSSGKACA ALE  GFKV+ IDV R V   LA LKPD+ FN LHG
Sbjct: 6   VAVLMGGFSSERPVSLSSGKACAEALEAEGFKVTCIDVARDVSEKLAALKPDVVFNALHG 65

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG +Q ILE LEIPYTHSG+LASAL+MDK ++K V ++ G+PV  S ++NRF   S
Sbjct: 66  PFGEDGTIQGILEYLEIPYTHSGVLASALAMDKDKAKLVAAAAGIPVAESQVINRFAFPS 125

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            H + PPYV+KP++ GSS G++++ +DQ+ P  ++ S  W++G+ +L+E+YV G ELTCG
Sbjct: 126 THPMKPPYVVKPVREGSSFGVVIVAEDQAHPPQVVSSPEWHYGEDVLVERYVYGRELTCG 185

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           VMGD +L VTE+     +FY Y+ KY++  S HV+PAKI  +IY+++Q LA  AHQAIGC
Sbjct: 186 VMGDVALGVTEVVPQGHNFYDYDSKYAAGGSKHVIPAKISPNIYQKIQTLALRAHQAIGC 245

Query: 241 RGISRSDFLFDP---LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           RG+SRSDF +D       ++ WLE+N QPGMTP S+ PEMA +AGYSF E L WMVEDAS
Sbjct: 246 RGVSRSDFRYDDRFSEDGEIIWLEVNTQPGMTPTSLVPEMAGHAGYSFGEFLRWMVEDAS 305

Query: 298 CLR 300
           CLR
Sbjct: 306 CLR 308


>gi|86358446|ref|YP_470338.1| D-alanine--D-alanine ligase [Rhizobium etli CFN 42]
 gi|86282548|gb|ABC91611.1| D-alanine-D-alanine ligase protein [Rhizobium etli CFN 42]
          Length = 308

 Score =  399 bits (1025), Expect = e-109,   Method: Composition-based stats.
 Identities = 175/303 (57%), Positives = 228/303 (75%), Gaps = 3/303 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSER VSLSSGKACA ALE  GFKV+ +DV R V   LA LKPD+ FN LHG
Sbjct: 6   VAVLMGGFSSERPVSLSSGKACAEALEAEGFKVTTLDVARDVSEKLAALKPDVVFNALHG 65

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG +Q ILE LEIPYTHSG+LASAL+MDK ++K+V ++ G+PV  S ++NRF   +
Sbjct: 66  PFGEDGTIQGILEYLEIPYTHSGVLASALAMDKGKAKRVAAAAGIPVAESQVINRFAFPA 125

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            H + PPYV+KP++ GSS G++++ +DQ+ P  ++ S  W++G+ +L+E+YV G ELTCG
Sbjct: 126 THPMKPPYVVKPVREGSSFGVVIVTEDQAHPPQVVSSPEWHYGEDVLVERYVYGRELTCG 185

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           VMGD +L VTE+     +FY Y+ KY++  S HV+PAKI  +IY+++Q LA  AHQAIGC
Sbjct: 186 VMGDVALGVTEVVPLGHNFYDYDSKYAAGGSKHVIPAKISPNIYQKIQTLALRAHQAIGC 245

Query: 241 RGISRSDFLFDP---LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           RG+SRSDF +D       ++ WLE+N QPGMTP S+ PEMA +AGYSF + L WMVEDAS
Sbjct: 246 RGVSRSDFRYDDRLSDDGEIIWLEVNTQPGMTPTSLVPEMAGHAGYSFGQFLRWMVEDAS 305

Query: 298 CLR 300
           CLR
Sbjct: 306 CLR 308


>gi|116253042|ref|YP_768880.1| D-alanine--D-alanine ligase [Rhizobium leguminosarum bv. viciae
           3841]
 gi|115257690|emb|CAK08788.1| putative D-alanine--D-alanine ligase B [Rhizobium leguminosarum bv.
           viciae 3841]
          Length = 308

 Score =  399 bits (1025), Expect = e-109,   Method: Composition-based stats.
 Identities = 173/303 (57%), Positives = 225/303 (74%), Gaps = 3/303 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSER VSLSSGKACA ALE  GF V++IDV R V   LA LKPD+ FN LHG
Sbjct: 6   VAVLMGGFSSERPVSLSSGKACAEALEAEGFDVTRIDVARDVSEKLAALKPDVVFNALHG 65

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG +Q ILE LEIPYTHSG+LASAL+MDK ++K V ++ G+ V  S +VNRF   S
Sbjct: 66  PFGEDGTIQGILEYLEIPYTHSGVLASALAMDKDKAKLVAAAAGITVAESQVVNRFAFPS 125

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            H + PPYV+KP++ GSS G++++ +DQ+ P  ++ S  W +G+++++E+YV G ELTCG
Sbjct: 126 THPMKPPYVVKPVREGSSFGVVIVTEDQAHPPQIVSSPEWRYGEEVIVERYVYGRELTCG 185

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           VMG+  L VTE+     +FY Y+ KY++  S HV+PAKI  +IY+++Q L+  AHQAIGC
Sbjct: 186 VMGETPLGVTEVVPQGHNFYDYDSKYAAGGSKHVIPAKISPNIYQKIQTLSLRAHQAIGC 245

Query: 241 RGISRSDFLFDP---LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           RG+SRSDF +D       ++ WLE+N QPGMTP S+ PEMA +AGYSF + L WMVEDAS
Sbjct: 246 RGVSRSDFRYDDRFSEDGEIIWLEVNTQPGMTPTSLVPEMAGHAGYSFGQFLRWMVEDAS 305

Query: 298 CLR 300
           CLR
Sbjct: 306 CLR 308


>gi|150397278|ref|YP_001327745.1| D-alanine--D-alanine ligase [Sinorhizobium medicae WSM419]
 gi|166198504|sp|A6UB80|DDL_SINMW RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|150028793|gb|ABR60910.1| D-alanine--D-alanine ligase [Sinorhizobium medicae WSM419]
          Length = 308

 Score =  398 bits (1023), Expect = e-109,   Method: Composition-based stats.
 Identities = 169/303 (55%), Positives = 223/303 (73%), Gaps = 3/303 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG SSER VSLSSG ACA ALE  G++V+++DV   V  VL  L+PD+ FN LHG
Sbjct: 6   VAVLLGGFSSERPVSLSSGTACADALEGEGYRVTRVDVGHDVAAVLQELRPDVVFNALHG 65

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG +Q ILE LEIPYTHSG+LASAL+MDK ++K V  + G+PV  +++++R +  +
Sbjct: 66  PFGEDGTIQGILEYLEIPYTHSGVLASALAMDKAQAKHVAKAAGIPVAEAVVMDRRSFGN 125

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           QH + PPYV+KP++ GSS G++++K+DQS P  ++ SS W +GD++++E+YV G E TCG
Sbjct: 126 QHPMKPPYVVKPVREGSSFGVVIVKEDQSHPPQVITSSDWRYGDRIMVERYVAGREFTCG 185

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           VMGD +L VTEI      FY Y+ KY    S HV+PA++  +IY+++Q LA  AHQAIGC
Sbjct: 186 VMGDVALGVTEIIPQGHAFYDYDSKYVKGGSKHVIPAQVSPNIYQKIQTLALKAHQAIGC 245

Query: 241 RGISRSDFLFDPLS---RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           RG+SRSDF FD       ++ WLEIN QPGMTP S+ PEMA +AG  F E L WMVEDAS
Sbjct: 246 RGVSRSDFRFDDRGDGEGELIWLEINTQPGMTPTSLVPEMAQHAGLRFGEFLRWMVEDAS 305

Query: 298 CLR 300
           CLR
Sbjct: 306 CLR 308


>gi|13471546|ref|NP_103112.1| D-alanine--D-alanine ligase [Mesorhizobium loti MAFF303099]
 gi|39931185|sp|Q98KB6|DDLB_RHILO RecName: Full=D-alanine--D-alanine ligase B; AltName:
           Full=D-Ala-D-Ala ligase B; AltName: Full=D-alanylalanine
           synthetase B
 gi|14022288|dbj|BAB48898.1| D-alanyl-D-alanine ligase [Mesorhizobium loti MAFF303099]
          Length = 308

 Score =  396 bits (1017), Expect = e-108,   Method: Composition-based stats.
 Identities = 173/303 (57%), Positives = 228/303 (75%), Gaps = 3/303 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG SSER VSLSSGKACA ALE+ G++V+++DV R VG VLA LKPD+AFN LHG
Sbjct: 6   VAVLLGGFSSERPVSLSSGKACADALENEGYQVTRVDVGRDVGSVLAELKPDVAFNALHG 65

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG +Q ILE L IPYTHSG+LASAL+M+K ++K++V + GVPV  S + NRF + +
Sbjct: 66  PFGEDGTIQGILEYLGIPYTHSGVLASALAMNKEQAKKIVKTVGVPVAESKVANRFAIQN 125

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +H + PPYVIKP+  GSS G++++ + QS P  ++ SS W +GD +++E+Y+ G ELTC 
Sbjct: 126 KHPMKPPYVIKPVNEGSSFGVVIVSEGQSHPPQVVGSSEWKYGDTVMVERYIHGRELTCA 185

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           VMGD +L V EI      FY Y+ KY +  S H  PAK+  +IY+++Q LA  AHQA+GC
Sbjct: 186 VMGDVALGVCEIIPTGHSFYDYDSKYVAGGSKHECPAKVSPNIYQKIQTLALKAHQAVGC 245

Query: 241 RGISRSDFLFDP---LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           RG+SRSDF +D     + +V WLE+N QPGMTP S+ PE+AA+AG+SF ELL WMVEDAS
Sbjct: 246 RGVSRSDFRYDDRHSENGEVVWLEVNTQPGMTPTSLVPEIAAHAGHSFGELLSWMVEDAS 305

Query: 298 CLR 300
           CLR
Sbjct: 306 CLR 308


>gi|110634354|ref|YP_674562.1| D-alanine--D-alanine ligase [Mesorhizobium sp. BNC1]
 gi|123353549|sp|Q11GS8|DDL_MESSB RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|110285338|gb|ABG63397.1| D-alanine--D-alanine ligase [Chelativorans sp. BNC1]
          Length = 308

 Score =  392 bits (1007), Expect = e-107,   Method: Composition-based stats.
 Identities = 169/303 (55%), Positives = 219/303 (72%), Gaps = 3/303 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSER VSLSSG +CA ALE  G++VS++DV R V  VL+ LKPD+AFN LHG
Sbjct: 6   VAVLMGGFSSERPVSLSSGNSCADALEAEGYRVSRVDVSRDVSRVLSELKPDVAFNALHG 65

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG VQ +LE L IPYTHSG+LASAL+MDK  +K V  S G+PV  S ++NRF +  
Sbjct: 66  PFGEDGTVQGVLEYLGIPYTHSGVLASALAMDKDLAKTVAKSAGIPVASSRVMNRFEIGD 125

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +H + PPYV+KP+  GSS G++++++ QS P  +L S+ W +G+++++E+Y+ G ELTC 
Sbjct: 126 KHPMEPPYVVKPVAEGSSFGVVIVREGQSHPPQVLGSAEWGYGERVMVERYIPGRELTCA 185

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           VMGD  L V EI      FY Y+ KY+   S HV PA+I  +IY++++RLA  AHQAIGC
Sbjct: 186 VMGDRVLGVCEIVPVGHSFYDYDSKYAPGGSRHVCPAEISPNIYQKIERLALKAHQAIGC 245

Query: 241 RGISRSDFLFD---PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           RG+SRSDF +D   P    + WLEIN QPGMTP S+ P++AA AG  F  LL WMVEDAS
Sbjct: 246 RGVSRSDFRYDDRLPGEEGIVWLEINTQPGMTPTSLVPDIAAQAGIGFGALLSWMVEDAS 305

Query: 298 CLR 300
           C R
Sbjct: 306 CPR 308


>gi|319782851|ref|YP_004142327.1| D-alanine/D-alanine ligase [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317168739|gb|ADV12277.1| D-alanine/D-alanine ligase [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 308

 Score =  392 bits (1007), Expect = e-107,   Method: Composition-based stats.
 Identities = 169/303 (55%), Positives = 224/303 (73%), Gaps = 3/303 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG SSER VSLSSGKACA  LE  G++V+++DV R VG VLA LKPD+AFN LHG
Sbjct: 6   VAVLLGGFSSERPVSLSSGKACADELEKEGYQVTRVDVGRDVGSVLAELKPDVAFNALHG 65

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG +Q ILE L IPYTHSG+LASAL+M+K ++K+V  S G+ V  S + +RF + +
Sbjct: 66  PFGEDGTIQGILEYLGIPYTHSGVLASALAMNKEQAKRVAKSVGIVVAESKVASRFAIQN 125

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +H + PPYV+KP+  GSS G++++ + QS P  +L SS W +GD +++E+Y+ G ELTC 
Sbjct: 126 KHPMKPPYVVKPVNEGSSFGVVIVHEGQSHPPQVLGSSEWKYGDTVMVERYIHGRELTCA 185

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           VMGD +L V EI      FY Y+ KY +  S H  PAK+  +IY+++Q LA  AHQAIGC
Sbjct: 186 VMGDVALGVCEIIPTGHSFYDYDSKYVAGGSKHECPAKVSPNIYQKIQTLALKAHQAIGC 245

Query: 241 RGISRSDFLFDP---LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           RG+SRSDF +D     + ++ WLE+N QPGMTP S+ PE+AA+AG+SF +LL WMVEDAS
Sbjct: 246 RGVSRSDFRYDDRHSENGEIVWLEVNTQPGMTPTSLVPEIAAHAGHSFGDLLSWMVEDAS 305

Query: 298 CLR 300
           CLR
Sbjct: 306 CLR 308


>gi|163760783|ref|ZP_02167863.1| D-alanine--D-alanine ligase [Hoeflea phototrophica DFL-43]
 gi|162282105|gb|EDQ32396.1| D-alanine--D-alanine ligase [Hoeflea phototrophica DFL-43]
          Length = 312

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 164/303 (54%), Positives = 217/303 (71%), Gaps = 3/303 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSER VSL++G  CA ALE AG+KV+++DV   V  VL  LKPD+ FN LHG
Sbjct: 10  VAVLMGGFSSERPVSLATGNPCADALESAGYKVTRVDVGTDVASVLTELKPDVCFNALHG 69

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG +Q +LE L IPYTHSG+ ASAL+MDK  SK V  + G+PV  S ++NR    S
Sbjct: 70  PFGEDGSIQGVLEYLGIPYTHSGVTASALAMDKRLSKIVAKAVGIPVAESKVMNRHDFTS 129

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            H + PPYV+KP+  GSS G+++++++Q+ P  ++ SS W +GD++++E+YV G ELTC 
Sbjct: 130 AHPMQPPYVVKPVNEGSSFGVVIVQENQTHPPQVITSSEWKYGDEVMVERYVPGRELTCT 189

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           +MG+ +L VTEI      FY Y+ KY +  S HV PA+I   +Y++++RLA  AHQAIGC
Sbjct: 190 IMGNVALAVTEIVPQGHSFYDYDSKYVAGGSKHVCPAEISPIVYQKIRRLALKAHQAIGC 249

Query: 241 RGISRSDFLFDP---LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           RG+SRSDF +D     + +V WLEIN QPGMTP S+ PEMA  AG+SF E + WMVEDAS
Sbjct: 250 RGVSRSDFRYDDRFSENGEVIWLEINTQPGMTPTSLAPEMALQAGHSFEEFVSWMVEDAS 309

Query: 298 CLR 300
           C R
Sbjct: 310 CRR 312


>gi|304392253|ref|ZP_07374195.1| D-alanine--D-alanine ligase [Ahrensia sp. R2A130]
 gi|303296482|gb|EFL90840.1| D-alanine--D-alanine ligase [Ahrensia sp. R2A130]
          Length = 316

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 161/303 (53%), Positives = 222/303 (73%), Gaps = 3/303 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSER VSLS+G +CA ALE  G++V+++DVDR+V   LA LKPD+AFN LHG
Sbjct: 14  VAVLMGGWSSERPVSLSTGNSCADALEAEGYRVTRVDVDRNVSATLADLKPDVAFNGLHG 73

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q ILE L+IPYTHSG++ASAL+MDK R+K V    G+PV  + +++R     
Sbjct: 74  PHGEDGTIQGILEYLDIPYTHSGVMASALAMDKERAKTVARRAGIPVAEAKVMHRLEAAE 133

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +H++ PPYV+KP+  GSS G++++ +D+S P   L S  W +GD +++E+++ G ELTC 
Sbjct: 134 KHVMKPPYVVKPVNEGSSFGVLIVCEDRSTPPQELYSDEWPYGDTVMVERFIHGRELTCA 193

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           VMGD +L VTEI      +Y Y+ KY+   STHVLPA+I  +IY+++Q L+  AH+AIGC
Sbjct: 194 VMGDVALGVTEITAADGGWYDYDAKYAEGGSTHVLPAEILPNIYQKIQTLSLKAHEAIGC 253

Query: 241 RGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           RG+SRSDF  D     + ++ WLE+N QPGMTP S+ PE+A +AG++F +LL WMVEDAS
Sbjct: 254 RGVSRSDFRLDDRVNGTGELIWLEVNTQPGMTPTSLLPELAQHAGHTFGDLLSWMVEDAS 313

Query: 298 CLR 300
           C R
Sbjct: 314 CQR 316


>gi|118590889|ref|ZP_01548289.1| D-alanylalanine synthetase [Stappia aggregata IAM 12614]
 gi|118436411|gb|EAV43052.1| D-alanylalanine synthetase [Stappia aggregata IAM 12614]
          Length = 308

 Score =  389 bits (1001), Expect = e-106,   Method: Composition-based stats.
 Identities = 157/303 (51%), Positives = 219/303 (72%), Gaps = 3/303 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG  +ER VSL+SGK CA ALE+AG++V+++DVDR++  VL  LKPD+ FN LHG
Sbjct: 6   VAVLMGGWVNERPVSLASGKGCADALEEAGYRVTRVDVDRNISAVLKDLKPDVVFNALHG 65

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG VQ ILE+L IPYTHSG+LAS+L+M+K+++K V+++ G+PV   ++VNR  +  
Sbjct: 66  PFGEDGCVQGILEVLNIPYTHSGVLASSLAMNKVKAKAVMNAAGIPVTEHLVVNRREITR 125

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +H + PPYV+KP+  GSS G++++K+DQ  P   L    W + D+L+ E+++ G ELTC 
Sbjct: 126 EHPMKPPYVLKPINEGSSFGVLIVKEDQEFPPQELGREDWPYPDELMCEKFIGGRELTCA 185

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           VM D +L V +I      FY Y+ KY+   S H+LPAKI   +Y+ ++ LA  AHQA+GC
Sbjct: 186 VMDDTALGVIDIVPLGHGFYDYDAKYAQGGSKHILPAKISPIVYQTIETLAVKAHQALGC 245

Query: 241 RGISRSDFLFDPLS---RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           RG+SR+DF FD       ++  LE+N QPGMTP S+ PEMAA+ G SF++L+ WMVEDAS
Sbjct: 246 RGVSRADFRFDEREDGSGELICLEVNTQPGMTPTSLVPEMAAHKGMSFKDLVSWMVEDAS 305

Query: 298 CLR 300
           C R
Sbjct: 306 CCR 308


>gi|260462093|ref|ZP_05810337.1| D-alanine/D-alanine ligase [Mesorhizobium opportunistum WSM2075]
 gi|259031953|gb|EEW33220.1| D-alanine/D-alanine ligase [Mesorhizobium opportunistum WSM2075]
          Length = 308

 Score =  389 bits (999), Expect = e-106,   Method: Composition-based stats.
 Identities = 169/303 (55%), Positives = 222/303 (73%), Gaps = 3/303 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG SSER VSLSSGKACA  LE  G++V+++DV R VG VLA LKPD+AFN LHG
Sbjct: 6   VAVLLGGFSSERPVSLSSGKACADELEKEGYQVTRVDVGRDVGSVLAELKPDVAFNALHG 65

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG +Q ILE L IPYTHSG+LASAL+M+K ++K+V  S G PV  S + +RF +  
Sbjct: 66  PFGEDGTIQGILEYLAIPYTHSGVLASALAMNKEQAKRVAKSVGTPVAESKVTSRFAIQD 125

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +H + PPYV+KP+  GSS G++++ + QS P  ++ SS W +GD +++E+Y+ G ELTC 
Sbjct: 126 KHPMKPPYVVKPVSEGSSFGVVIVSEGQSHPPQVIGSSEWKYGDTVMVERYIHGRELTCA 185

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           VMGD +L V EI      FY Y+ KY +  S H  PAK+  +IY+++Q LA  AHQ IGC
Sbjct: 186 VMGDVALGVCEIIPTGHSFYDYDSKYVAGGSKHECPAKVSPNIYQKIQTLALKAHQVIGC 245

Query: 241 RGISRSDFLFDP---LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           RG+SRSDF +D     + +V WLE+N QPGMTP S+ PE+AA+AG+SF +LL WMVEDAS
Sbjct: 246 RGVSRSDFRYDDRHSENGEVVWLEVNTQPGMTPTSLVPEIAAHAGHSFGDLLSWMVEDAS 305

Query: 298 CLR 300
           CLR
Sbjct: 306 CLR 308


>gi|220927177|ref|YP_002502479.1| D-alanine--D-alanine ligase [Methylobacterium nodulans ORS 2060]
 gi|219951784|gb|ACL62176.1| D-alanine/D-alanine ligase [Methylobacterium nodulans ORS 2060]
          Length = 307

 Score =  385 bits (989), Expect = e-105,   Method: Composition-based stats.
 Identities = 163/303 (53%), Positives = 219/303 (72%), Gaps = 3/303 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSEREVSL+SG+ACA ALE  GF+++ IDV R++  VLA ++PD+AFN LHG
Sbjct: 5   VAVLMGGWSSEREVSLNSGRACARALEAQGFRITPIDVQRNLAAVLAEVQPDIAFNALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG VQ +LEL+ IPYTHSG+LASAL+M K R+K V+ S GVPV    +VNRF   S
Sbjct: 65  PCGEDGTVQGLLELMAIPYTHSGVLASALAMHKDRAKVVMRSAGVPVPEGRIVNRFEAAS 124

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +H++ PPYV+KP+  GSS+G++++++ +S P   L    W++GD++L E Y+ G ELTC 
Sbjct: 125 RHVLPPPYVLKPVAEGSSVGVVIVREGRSHPPQELAREDWSYGDEVLAETYIPGRELTCA 184

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           VMGD +L V +I     ++Y Y+ KY+   S HVLPA+I   IY+ V+ LA  AHQA+GC
Sbjct: 185 VMGDTALGVIDIRPATGEWYDYDAKYAKGGSVHVLPAEIKPKIYQRVRELALTAHQALGC 244

Query: 241 RGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           RG+SR+D  +D     +  +  LE+N QPGMT  S+ PE+AA+AGYSF EL+ WMVEDAS
Sbjct: 245 RGVSRADLRYDDTPGGTGALVVLEVNTQPGMTETSLVPELAAHAGYSFGELVRWMVEDAS 304

Query: 298 CLR 300
             R
Sbjct: 305 LNR 307


>gi|239832306|ref|ZP_04680635.1| D-alanine--D-alanine ligase [Ochrobactrum intermedium LMG 3301]
 gi|239824573|gb|EEQ96141.1| D-alanine--D-alanine ligase [Ochrobactrum intermedium LMG 3301]
          Length = 320

 Score =  384 bits (988), Expect = e-105,   Method: Composition-based stats.
 Identities = 173/303 (57%), Positives = 230/303 (75%), Gaps = 3/303 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSER VSLSSG +CA+ LE+ G++V++IDVDR+V  VLA LKPD+ FN LHG
Sbjct: 18  VAVLMGGFSSERPVSLSSGASCAATLEECGYRVTRIDVDRNVATVLAELKPDVVFNALHG 77

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG +Q +LE L+IPYTHSG+LASAL+MDK R+K+V ++ GV V PS+L+NRF + +
Sbjct: 78  PFGEDGAIQGVLEYLQIPYTHSGVLASALAMDKDRAKKVAAAAGVAVAPSLLLNRFEIGT 137

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +H + PPYV+KP++ GSS G++++K DQ+ P  ++ S+ WN+G ++L+E+Y+ G ELTC 
Sbjct: 138 EHPMKPPYVVKPVREGSSFGVVIVKDDQAHPPQIISSAEWNYGAEVLVEKYIPGRELTCS 197

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           VM D ++DV EI      FY Y+ KY +  STHV PAKI  +IY+++Q +A  AH+AIGC
Sbjct: 198 VMDDRAMDVCEIIPVGHQFYDYDSKYVAGASTHVCPAKILPNIYQKIQTMALTAHRAIGC 257

Query: 241 RGISRSDFLFDP---LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           RG+SRSDF FD       +V WLEIN QPGMT  S+ P++A  AG SF ELL WMVEDAS
Sbjct: 258 RGVSRSDFRFDDRFSEDGEVIWLEINTQPGMTSTSLVPDIARAAGISFGELLSWMVEDAS 317

Query: 298 CLR 300
           CLR
Sbjct: 318 CLR 320


>gi|312114841|ref|YP_004012437.1| D-alanine/D-alanine ligase [Rhodomicrobium vannielii ATCC 17100]
 gi|311219970|gb|ADP71338.1| D-alanine/D-alanine ligase [Rhodomicrobium vannielii ATCC 17100]
          Length = 309

 Score =  384 bits (988), Expect = e-105,   Method: Composition-based stats.
 Identities = 158/304 (51%), Positives = 215/304 (70%), Gaps = 5/304 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSEREVSL+SG+ACA ALE  G++V++IDV R +   LA LKPD AFN LHG
Sbjct: 7   IAVLMGGWSSEREVSLNSGEACAGALEAQGYRVTRIDVGRDIADRLAALKPDAAFNALHG 66

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG VQ ILE L+IPYTHSG+LASAL+MDK R+K  + + GVPV   ++ +      
Sbjct: 67  KWGEDGCVQGILETLQIPYTHSGVLASALAMDKARAKVAMKAAGVPVAAGVVASPAKAAQ 126

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +HL+ PPYV+KP+  GSS+G+ +++ D   P   L  + W HGD +L+E+YV G ELTC 
Sbjct: 127 RHLLPPPYVVKPVCEGSSVGVFIVRNDYEHPPQELTRADWTHGD-VLVERYVAGRELTCA 185

Query: 181 VMGDASLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
           V+GD +L + EI   +   FY YE KY+   S H+LPA++  +IY+ +Q++A  AH A+G
Sbjct: 186 VLGDRALGIIEIKPAEGLIFYDYEAKYAKGGSYHILPARLSPEIYENIQKMAVDAHHALG 245

Query: 240 CRGISRSDFLFD---PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           CRG+SR+DF  D     + ++  LE+N QPGMT  S+ PE+AA+AG SF EL+ W+VE+A
Sbjct: 246 CRGVSRADFRLDDRPEGTGELVCLEVNTQPGMTATSLVPELAAHAGLSFGELVRWIVENA 305

Query: 297 SCLR 300
           SC R
Sbjct: 306 SCNR 309


>gi|315122574|ref|YP_004063063.1| D-alanine--D-alanine ligase [Candidatus Liberibacter solanacearum
           CLso-ZC1]
 gi|313495976|gb|ADR52575.1| D-alanine--D-alanine ligase [Candidatus Liberibacter solanacearum
           CLso-ZC1]
          Length = 311

 Score =  384 bits (987), Expect = e-105,   Method: Composition-based stats.
 Identities = 224/300 (74%), Positives = 270/300 (90%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VLMGGISSER+VSL SG+ CA+ALED GFKV+ IDVDRS+GL+L+HLKPD+AFN LHG
Sbjct: 12  VVVLMGGISSERDVSLLSGRVCAAALEDWGFKVTSIDVDRSIGLILSHLKPDIAFNALHG 71

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDGL+Q+ILE LEIPYTHSGILASALSMDKMR+K++VSS GV VCPS+LVNR TMDS
Sbjct: 72  GFGEDGLIQSILEFLEIPYTHSGILASALSMDKMRAKKIVSSSGVSVCPSVLVNRITMDS 131

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           QH++SPPY+IKPLKGGSSLG+IV+ + +S+PLD+LQSSSW HGDQLL+EQY++GIEL+CG
Sbjct: 132 QHVMSPPYIIKPLKGGSSLGVIVVTEGESVPLDVLQSSSWIHGDQLLVEQYINGIELSCG 191

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           +MG+ +L VTEI   KSDFY+Y+ KYSS  S+HVLPA IP  I +EV+R++ +AHQAIGC
Sbjct: 192 IMGEQALSVTEIVSQKSDFYTYDSKYSSSVSSHVLPANIPWSILQEVRRISVVAHQAIGC 251

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           RGISRSDF+FDP+S+++FWLEIN QPGMT VSIFPEMAAYAGYSFR+LLLWM+EDASC R
Sbjct: 252 RGISRSDFIFDPVSKEIFWLEINTQPGMTNVSIFPEMAAYAGYSFRDLLLWMLEDASCSR 311


>gi|90418191|ref|ZP_01226103.1| D-alanine--D-alanine ligase [Aurantimonas manganoxydans SI85-9A1]
 gi|90337863|gb|EAS51514.1| D-alanine--D-alanine ligase [Aurantimonas manganoxydans SI85-9A1]
          Length = 321

 Score =  381 bits (980), Expect = e-104,   Method: Composition-based stats.
 Identities = 164/303 (54%), Positives = 216/303 (71%), Gaps = 3/303 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSER VSL+SGKACA+ALE AG+ V+ +DVDR+V   LA L+PD+AFN LHG
Sbjct: 19  VAVLMGGFSSERPVSLASGKACAAALETAGYTVTTVDVDRNVAETLARLRPDVAFNALHG 78

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG +Q ILE LEIPYTHSG+LASAL+M K R+K V  + GVPV  + L +R     
Sbjct: 79  PFGEDGTIQGILEYLEIPYTHSGVLASALAMHKERAKIVAKAAGVPVAEAKLRHRLDAAE 138

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            H++ PPYVIKP+  GSS G++++++DQ  P   L    W +GD ++IE++V G ELTC 
Sbjct: 139 SHVLPPPYVIKPVAEGSSFGVLIVREDQPHPPQQLYGDDWPYGDIVMIERFVAGRELTCA 198

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           VMGD +L+V EI      FY Y+ KY    S+H++PA +P D+ +++Q  +  AH A+GC
Sbjct: 199 VMGDVALEVCEIVTEGHAFYDYDSKYVPGGSSHIVPADLPKDVARKIQGWSLAAHAALGC 258

Query: 241 RGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           RG+SRSDF +D       +V WLE+N QPGMT  S+ P++AA +G+SF ELL WMVEDAS
Sbjct: 259 RGVSRSDFRYDDRFGPGGEVVWLEVNTQPGMTETSLVPDIAAASGHSFPELLSWMVEDAS 318

Query: 298 CLR 300
           C R
Sbjct: 319 CRR 321


>gi|217979596|ref|YP_002363743.1| D-alanine--D-alanine ligase [Methylocella silvestris BL2]
 gi|254767734|sp|B8ETM9|DDL_METSB RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|217504972|gb|ACK52381.1| D-alanine/D-alanine ligase [Methylocella silvestris BL2]
          Length = 307

 Score =  379 bits (973), Expect = e-103,   Method: Composition-based stats.
 Identities = 159/303 (52%), Positives = 215/303 (70%), Gaps = 3/303 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG+S+EREVSL SG ACA ALE  GF+V+ +DVDR +   LA L+PD A N LHG
Sbjct: 5   VAVLMGGLSAEREVSLRSGAACAKALEAEGFRVTTLDVDRDIAQKLAALRPDAALNALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG++Q +LE+L IPYTHSG+LASAL+M K R+K V+ + GVPV   + + RF    
Sbjct: 65  RYGEDGVIQGVLEMLAIPYTHSGVLASALAMQKDRAKDVLRAAGVPVAEGVTIGRFEAAK 124

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            H+++PPYV+KPL  GSS G+I+++ DQ+ P   L    W +GD +L+E++V G ELTC 
Sbjct: 125 AHVMTPPYVVKPLGEGSSFGVIIVRADQTHPPQELTRDDWAYGDLVLVERFVAGRELTCA 184

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V+GD +  VTEI      +Y Y+ KY +  S H+LPA +   +Y+ VQ LA +AH+A+GC
Sbjct: 185 VIGDKAYGVTEIRAADGGWYDYDAKYKAGGSIHILPANLKEFVYQNVQELALVAHRALGC 244

Query: 241 RGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           RG+SR+DF +D     + ++  LE+N QPGMT  S+ PE+AAYAG SF EL+ WMVEDAS
Sbjct: 245 RGVSRTDFRYDDTPQGTGELVVLEVNSQPGMTETSLVPEIAAYAGISFGELVRWMVEDAS 304

Query: 298 CLR 300
           C R
Sbjct: 305 CDR 307


>gi|307944891|ref|ZP_07660228.1| D-alanine--D-alanine ligase [Roseibium sp. TrichSKD4]
 gi|307771815|gb|EFO31039.1| D-alanine--D-alanine ligase [Roseibium sp. TrichSKD4]
          Length = 309

 Score =  379 bits (973), Expect = e-103,   Method: Composition-based stats.
 Identities = 158/303 (52%), Positives = 217/303 (71%), Gaps = 3/303 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG  +ER VSLSSG+ CA+ALE  G+KV+++DVDR +  VLA L+PD+AFN LHG
Sbjct: 7   VAVLMGGWVNERPVSLSSGEGCAAALEKGGYKVTRVDVDRDIASVLADLRPDVAFNALHG 66

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG +Q ILE+LEIPYTHSG++ASAL+M+K ++K V++  G+PV   ++VNRF +  
Sbjct: 67  PFGEDGCIQGILEILEIPYTHSGVMASALAMNKDKAKAVMAEAGIPVTEHLIVNRFHVGH 126

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            H + PPYV+KP+  GSS G+I++K+DQ  P   L    W + D L+ E+++ G ELTC 
Sbjct: 127 DHPMKPPYVLKPINEGSSFGVIIVKEDQPHPPQELTREDWPYPDDLMCEKFIGGRELTCA 186

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           VMG+  L V E+    + FY ++ KY+   S H+LPAKI   +Y+E+Q+L+  AHQA+GC
Sbjct: 187 VMGEKPLGVIEVVPTGNSFYDFDAKYAEGGSKHILPAKISPFVYQEIQKLSVEAHQALGC 246

Query: 241 RGISRSDFLFDPLS---RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           RG+SR+DF FD        +  LE+N QPGMTP S+ PEMA + G S+ EL+ WMVE+AS
Sbjct: 247 RGVSRADFRFDEREDGSGNLVCLEVNTQPGMTPTSLVPEMAEHEGMSYVELVSWMVEEAS 306

Query: 298 CLR 300
           C R
Sbjct: 307 CCR 309


>gi|182677688|ref|YP_001831834.1| D-alanine--D-alanine ligase [Beijerinckia indica subsp. indica ATCC
           9039]
 gi|229463732|sp|B2IGG3|DDL_BEII9 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|182633571|gb|ACB94345.1| D-alanine--D-alanine ligase [Beijerinckia indica subsp. indica ATCC
           9039]
          Length = 307

 Score =  378 bits (972), Expect = e-103,   Method: Composition-based stats.
 Identities = 157/303 (51%), Positives = 219/303 (72%), Gaps = 3/303 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG+S+EREVSL SG ACA AL   GF+V+++DVDR +G  LA L+PD+AFN LHG
Sbjct: 5   VAVLMGGLSAEREVSLCSGAACAEALRGEGFEVTEVDVDRQIGERLAALRPDVAFNALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG++Q +LE+L IPYTHSG+LASAL+M K R++ V+++ GVP+   + V+R     
Sbjct: 65  RFGEDGIIQGVLEMLAIPYTHSGVLASALAMRKDRARDVLAAAGVPIAKGVTVDRLEAAQ 124

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +H++ PPYVIKPL  GSS G+ ++++DQ+ P   L  S W  G+++L+E Y+ G ELTC 
Sbjct: 125 RHILPPPYVIKPLGEGSSFGVFIVREDQAYPPQELTRSDWAFGNRVLVESYIGGRELTCA 184

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V+G+ + DV EI      +Y Y+ KY    S H+LPA++  +IY+ VQ L+  AH+A+GC
Sbjct: 185 VIGEKAHDVIEIKAVGGGWYDYDAKYRKGGSIHILPAELKRNIYQNVQLLSLKAHKALGC 244

Query: 241 RGISRSDFLFD---PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           RG+SR+DF +D     + ++  LE+N QPGMT  S+ PE+AAYAG SF EL+ WMV+DAS
Sbjct: 245 RGVSRTDFRYDDRPEGTGELIVLEVNTQPGMTETSLLPEIAAYAGLSFGELVRWMVDDAS 304

Query: 298 CLR 300
           C R
Sbjct: 305 CDR 307


>gi|325293460|ref|YP_004279324.1| D-alanine-D-alanine ligase [Agrobacterium sp. H13-3]
 gi|325061313|gb|ADY65004.1| D-alanine-D-alanine ligase [Agrobacterium sp. H13-3]
          Length = 308

 Score =  378 bits (972), Expect = e-103,   Method: Composition-based stats.
 Identities = 169/303 (55%), Positives = 228/303 (75%), Gaps = 3/303 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG SSER VSLSSG ACA ALE  G+KV+++DV R +  VL  L+PD+AFN LHG
Sbjct: 6   VAVLLGGFSSERPVSLSSGNACALALEGEGYKVTRVDVGRDIAAVLGELRPDVAFNALHG 65

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG +Q ILE L IPYTHSG+LASAL+MDK ++K+V ++ G+PV    ++NRF   S
Sbjct: 66  PFGEDGTIQGILEYLAIPYTHSGVLASALAMDKAQAKKVAAAAGIPVADERVMNRFEFTS 125

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +H ++PPYV+KP++ GSS G++++K+DQS P  +L SS W +GD +++E+Y+ G ELTCG
Sbjct: 126 EHPLAPPYVVKPVREGSSFGVVIVKEDQSHPPQILTSSEWRYGDHVMVERYIHGRELTCG 185

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V+   +L VTE+     +FY Y+ KY++  S HV+PA+I   IY+++Q LA +AH+AIGC
Sbjct: 186 VLDGEALGVTEVVPLGHNFYDYDAKYAAGGSKHVIPAEISPKIYQKIQTLAVMAHRAIGC 245

Query: 241 RGISRSDFLFDP---LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           RG+SRSDF +D       +V WLE+N QPGMTP S+ PEMAA+AG SF  L+ WMVEDAS
Sbjct: 246 RGVSRSDFRYDDRFSEDGEVIWLEVNTQPGMTPTSLVPEMAAHAGRSFGNLVSWMVEDAS 305

Query: 298 CLR 300
           CLR
Sbjct: 306 CLR 308


>gi|170748771|ref|YP_001755031.1| D-alanine--D-alanine ligase [Methylobacterium radiotolerans JCM
           2831]
 gi|190359165|sp|B1LXZ1|DDL_METRJ RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|170655293|gb|ACB24348.1| D-alanine--D-alanine ligase [Methylobacterium radiotolerans JCM
           2831]
          Length = 307

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 157/303 (51%), Positives = 213/303 (70%), Gaps = 3/303 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SGKACA ALE  G++V+++DV   +  VL  L+PD AFN LHG
Sbjct: 5   VAVLLGGTSAEREVSLNSGKACADALEGEGYRVTRVDVGPDIASVLTALRPDAAFNALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LE+L+IPYTHSG+LASAL+M+K R+K V+ + GV V    +VNR     
Sbjct: 65  PDGEDGTIQGLLEILKIPYTHSGVLASALAMNKERAKTVMRAAGVDVPEGRIVNRREAAR 124

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            H + PPYV+KP+  GSS+G+I+++  +S P  +L S  W  G+Q+L E Y+ G ELTCG
Sbjct: 125 THPLPPPYVVKPIAEGSSVGVIIVRDGRSHPPQILASEEWTFGEQVLAEPYIAGRELTCG 184

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           VMGD +L V E+     D+Y Y+ KY+   S HVLPA++  ++Y+ VQ L+  AHQA+GC
Sbjct: 185 VMGDKALGVIEVKAATGDWYDYDAKYAPGGSVHVLPAELKPNVYQRVQELSLTAHQALGC 244

Query: 241 RGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           RG+SR+D  +D     +  +  LE+N QPGMT  S+ PEMAA+AG SF EL+ WMVEDAS
Sbjct: 245 RGVSRADLRYDDTPGGTGLLVVLEVNTQPGMTQTSLVPEMAAHAGLSFGELVRWMVEDAS 304

Query: 298 CLR 300
             R
Sbjct: 305 LNR 307


>gi|296448759|ref|ZP_06890613.1| D-alanine/D-alanine ligase [Methylosinus trichosporium OB3b]
 gi|296253733|gb|EFH00906.1| D-alanine/D-alanine ligase [Methylosinus trichosporium OB3b]
          Length = 311

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 164/303 (54%), Positives = 215/303 (70%), Gaps = 3/303 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG+SSER +SL SG ACA ALE  GF+V+++DV R V  VLA LKPD+AFN LHG
Sbjct: 9   VAVLMGGLSSERPISLRSGAACAEALEGEGFRVTRVDVGRDVAEVLAALKPDVAFNALHG 68

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG +Q ILE L IPYTHSG+LAS+L+M K  +K V+++ GVPV    +++R     
Sbjct: 69  RFGEDGCIQGILETLHIPYTHSGVLASSLAMRKDVAKSVMAAAGVPVPKGRVLSRQEAAK 128

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            H + PPYV+KP+  GSS G+ ++K+ +S P   L ++ W HGD +L E +VDG ELTC 
Sbjct: 129 AHALPPPYVLKPVSEGSSFGVFIVKEGRSHPPQELAAADWKHGDLMLAENFVDGRELTCA 188

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           VMGD +L V EI     +FY ++ KY+   S HVLPA +  +IY+EVQ+LA  AH+A+GC
Sbjct: 189 VMGDRALGVIEILPVSEEFYGFDAKYAKGGSKHVLPANLKQNIYQEVQQLALEAHRALGC 248

Query: 241 RGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           RG+SR+DF +D     +  +  LE+N QPGMT  S+ PEMAA+AGYSF  L+ WMVEDAS
Sbjct: 249 RGVSRADFRYDDSPGGTGDLVVLEVNTQPGMTETSLVPEMAAHAGYSFGGLVRWMVEDAS 308

Query: 298 CLR 300
           C R
Sbjct: 309 CDR 311


>gi|153009077|ref|YP_001370292.1| D-alanine--D-alanine ligase [Ochrobactrum anthropi ATCC 49188]
 gi|166198496|sp|A6WZQ9|DDL_OCHA4 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|151560965|gb|ABS14463.1| D-alanine--D-alanine ligase [Ochrobactrum anthropi ATCC 49188]
          Length = 308

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 175/303 (57%), Positives = 231/303 (76%), Gaps = 3/303 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSER VSLSSG ACA+ LE+ G+ V++IDVDR+V  VLA LKPD+AFN LHG
Sbjct: 6   VAVLMGGFSSERPVSLSSGTACAATLEERGYCVTRIDVDRNVASVLAELKPDVAFNALHG 65

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG +Q +LE L+IPYTHSG+LASAL+MDK R+K+V ++ GV V  S+L+NRF + +
Sbjct: 66  PFGEDGAIQGVLEYLQIPYTHSGVLASALAMDKDRAKKVAAAAGVAVASSLLLNRFEIGT 125

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +H + PPYV+KP++ GSS G++++K+DQ+ P  ++ S+ WN+G ++L+E+Y+ G ELTC 
Sbjct: 126 EHPMEPPYVVKPVREGSSFGVVIVKEDQTHPPQIISSAEWNYGAEVLVEKYIPGRELTCA 185

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           VMGD  +DV EI      FY Y+ KY +  S+HV PAKI  +IY+++Q +A  AH+AIGC
Sbjct: 186 VMGDRVMDVCEIIPVGHQFYDYDSKYVAGASSHVCPAKILPNIYQKIQTMALTAHRAIGC 245

Query: 241 RGISRSDFLFDP---LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           RG+SRSDF FD       +V WLEIN QPGMTP S+ P++A  AG SF ELL WMVEDAS
Sbjct: 246 RGVSRSDFRFDDRFSDDGEVIWLEINTQPGMTPTSLVPDIAKAAGISFGELLSWMVEDAS 305

Query: 298 CLR 300
           CLR
Sbjct: 306 CLR 308


>gi|158426185|ref|YP_001527477.1| D-alanine--D-alanine ligase [Azorhizobium caulinodans ORS 571]
 gi|190359111|sp|A8HZA8|DDL_AZOC5 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|158333074|dbj|BAF90559.1| D-alanine ligase [Azorhizobium caulinodans ORS 571]
          Length = 306

 Score =  375 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 162/303 (53%), Positives = 217/303 (71%), Gaps = 4/303 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG S EREVSL SG  CA ALE+ G++V+++DVDR V  VLA LKPD+A N+LHG
Sbjct: 5   VAVLMGGWSPEREVSLRSGAGCAKALEEVGYRVTRVDVDRDVAEVLARLKPDVALNLLHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q ILE+L IPY+HSG+LASAL+MDK R+K V+++ G+PV    LV R     
Sbjct: 65  CPGEDGTIQGILEILRIPYSHSGVLASALAMDKARAKVVMAAAGIPVPGGHLVTRAEAAK 124

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            H++ PPYV+KP  GGSS+G+ ++K+DQ  P   L  + W  G+ L+ E ++ G+ELTCG
Sbjct: 125 GHVLPPPYVLKPNTGGSSVGVFIVKEDQPHPPQELFRADWTFGESLMAEPFIKGLELTCG 184

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           VMGD +LDV E+      FY YE KY++  S H+LPA++   IY++V+ LA  AH+A+GC
Sbjct: 185 VMGDRALDVIEVEAVH-GFYDYESKYAAGGSRHILPARVLPQIYQQVRMLALEAHRALGC 243

Query: 241 RGISRSDFLFD---PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           RGISR+DF +D   P  + +  LE+N QPGMT  S+ P+MAA+AG SF EL+ WMVEDA+
Sbjct: 244 RGISRADFRYDDTLPDGKGLVCLEVNTQPGMTETSLVPDMAAHAGISFGELVTWMVEDAT 303

Query: 298 CLR 300
             R
Sbjct: 304 LDR 306


>gi|222149132|ref|YP_002550089.1| D-alanine--D-alanine ligase [Agrobacterium vitis S4]
 gi|221736117|gb|ACM37080.1| D-alanine:D-alanine ligase [Agrobacterium vitis S4]
          Length = 300

 Score =  375 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 162/299 (54%), Positives = 218/299 (72%), Gaps = 3/299 (1%)

Query: 5   MGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGE 64
           +GG SSER VSL+SG  CASALE+ G++V+++DV R +  VL  LKPD+ FN LHG FGE
Sbjct: 2   LGGFSSERPVSLASGAPCASALEEHGYRVTRVDVTRDIASVLHDLKPDVVFNALHGPFGE 61

Query: 65  DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI 124
           DG +Q ILE L IPYTHSG+LASAL+MDK ++K V ++ G+PV  +  ++RF + + H I
Sbjct: 62  DGTIQGILEYLSIPYTHSGVLASALAMDKTQAKIVAAAAGIPVAFARQMSRFEIGNVHPI 121

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
            PPYV+KP++ GSS G++++K+DQS P  +L SS W +GD +++E YV G ELTCGVM  
Sbjct: 122 EPPYVVKPVREGSSFGVVIVKEDQSHPPQILGSSEWRYGDTVMVESYVAGRELTCGVMDG 181

Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244
            +L VTE+    + FY Y+ KY++  STHV+PA++   IY+++Q L+  AH AIGCRG+S
Sbjct: 182 KALAVTEVIAKANTFYDYDSKYAAGGSTHVIPAQLSPKIYQKIQDLSVRAHNAIGCRGVS 241

Query: 245 RSDFLFDP---LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           RSDF +D        + WLE+N QPGMTP S+ PEMAA+AG SF E + WMVEDASC R
Sbjct: 242 RSDFRYDDRFSEDGDLIWLEVNTQPGMTPTSLVPEMAAHAGISFGEFVSWMVEDASCSR 300


>gi|159185044|ref|NP_355054.2| D-alanine--D-alanine ligase [Agrobacterium tumefaciens str. C58]
 gi|22095557|sp|Q8UDN3|DDL_AGRT5 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|159140318|gb|AAK87839.2| D-alanylalanine synthetase [Agrobacterium tumefaciens str. C58]
          Length = 308

 Score =  375 bits (963), Expect = e-102,   Method: Composition-based stats.
 Identities = 171/303 (56%), Positives = 227/303 (74%), Gaps = 3/303 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG SSER VSLSSG ACA ALE  G+KV+++DV R V  VL  L+PD+AFN LHG
Sbjct: 6   VAVLLGGFSSERPVSLSSGNACALALEGEGYKVTRVDVGRDVAAVLDELRPDVAFNALHG 65

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG +Q ILE L IPYTHSG+LASAL+MDK ++K+V ++ G+PV    ++NRF   S
Sbjct: 66  PFGEDGTIQGILEYLAIPYTHSGVLASALAMDKAQAKKVAAAAGIPVAGERVMNRFDFTS 125

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +H + PPYV+KP++ GSS G++++K+DQS P  +L SS W  G+Q+++E+Y+ G ELTCG
Sbjct: 126 EHPLQPPYVVKPVREGSSFGVVIVKEDQSHPPQILTSSEWPFGNQVMVERYIHGRELTCG 185

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V+   +L VTE+     +FY Y+ KY++  S HV+PA I   IY+++Q LA +AHQAIGC
Sbjct: 186 VLDGEALGVTEVVPLGHNFYDYDAKYAAGGSKHVIPAGISPKIYQKIQTLAVMAHQAIGC 245

Query: 241 RGISRSDFLFDP---LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           RG+SRSDF +D       +V WLE+N QPGMTP S+ PEMAA+AG SF +L+ WMVEDAS
Sbjct: 246 RGVSRSDFRYDDRFSEDGEVIWLEVNTQPGMTPTSLVPEMAAHAGRSFGDLVSWMVEDAS 305

Query: 298 CLR 300
           CLR
Sbjct: 306 CLR 308


>gi|188582372|ref|YP_001925817.1| D-alanine--D-alanine ligase [Methylobacterium populi BJ001]
 gi|229485965|sp|B1ZGP9|DDL_METPB RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|179345870|gb|ACB81282.1| D-alanine--D-alanine ligase [Methylobacterium populi BJ001]
          Length = 307

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 156/303 (51%), Positives = 213/303 (70%), Gaps = 3/303 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSERE+SL SG ACA ALE  G++V+++DV   +  VL  LKPD A N LHG
Sbjct: 5   VAVLMGGWSSEREISLRSGNACAEALEGEGYRVTRVDVGPDIATVLTDLKPDAALNALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LE+L+IPYTHSG+LASAL+M K R+K V+ + GV V    +VNR     
Sbjct: 65  PAGEDGTIQGLLEILKIPYTHSGVLASALAMHKERAKTVMRAAGVSVPEGRVVNRHDAAK 124

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            H ++PPYV+KP+  GSS+G+I++++++S P  +L S  W +G+++L E Y+ G ELTC 
Sbjct: 125 SHPLTPPYVVKPIAEGSSMGVIIVREERSHPPQILASDEWVYGEEVLAETYIAGRELTCA 184

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V+GD +L VTEI     ++Y ++ KY+   S HVLPA + L+IY+ VQ LA  AHQA+GC
Sbjct: 185 VLGDRALGVTEIKPVSGEWYDFDAKYAGGGSIHVLPADLKLNIYQRVQELALTAHQALGC 244

Query: 241 RGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           RG+SR+D  +D     +  +  LE+N QPGMT  S+ PE+AA+AG SF EL+ WMVEDAS
Sbjct: 245 RGVSRADLRYDDTPGGTGALVVLEVNTQPGMTQTSLVPEIAAHAGLSFGELVRWMVEDAS 304

Query: 298 CLR 300
             R
Sbjct: 305 LNR 307


>gi|260576896|ref|ZP_05844879.1| D-alanine/D-alanine ligase [Rhodobacter sp. SW2]
 gi|259020933|gb|EEW24246.1| D-alanine/D-alanine ligase [Rhodobacter sp. SW2]
          Length = 307

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 141/302 (46%), Positives = 197/302 (65%), Gaps = 8/302 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG+S+EREVSL SG+ CA AL +AGF+V ++D DR +   L+ ++PD+ FN LHG
Sbjct: 12  VAVLMGGLSAEREVSLVSGRECAQALREAGFQVIEVDADRDLCARLSEIQPDVVFNALHG 71

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG VQ +LE L +PYTHSG+LASAL+MDK R+K+   + G+P+  S L     + +
Sbjct: 72  RWGEDGCVQGMLEWLGLPYTHSGVLASALAMDKARAKEAYRAAGLPIVESRLACTAEVKA 131

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +H++ PPYV+KP   GSS+G+ +++   + P  L      +  + +++E Y  G ELT  
Sbjct: 132 RHVMPPPYVVKPNNEGSSVGVYLVQDAANSPPQL----GADMPEVVMVETYAPGRELTVS 187

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           VMG+ +L VT+I    + +Y Y+ KY    S HV+PA +P +I       A  AH+A+GC
Sbjct: 188 VMGERALAVTDIIT--TGWYDYDAKYKPGGSRHVVPADLPQEITAACLEYALRAHRALGC 245

Query: 241 RGISRSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           RG+SR+DF +D       +  LE N QPGMTP S+ PE AA  G SF EL  WMVEDASC
Sbjct: 246 RGLSRTDFRWDESRGLAGLILLETNTQPGMTPTSLSPEQAAQCGISFPELCRWMVEDASC 305

Query: 299 LR 300
            R
Sbjct: 306 NR 307


>gi|154252866|ref|YP_001413690.1| D-alanine--D-alanine ligase [Parvibaculum lavamentivorans DS-1]
 gi|190359199|sp|A7HVV0|DDL_PARL1 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|154156816|gb|ABS64033.1| D-alanine--D-alanine ligase [Parvibaculum lavamentivorans DS-1]
          Length = 308

 Score =  373 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 156/303 (51%), Positives = 211/303 (69%), Gaps = 4/303 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL SGK CA AL   G++V++ID  R +   +  +KPD+AFN LHG
Sbjct: 7   VAVLKGGWSAEREVSLVSGKGCAEALRKHGYRVTEIDAGRDLADQILKVKPDVAFNALHG 66

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG VQ +LE+L +PYTHSG+LASAL+M K R+K V  + G+PV  S++V R     
Sbjct: 67  RWGEDGCVQGLLEILRVPYTHSGVLASALAMHKERAKFVFRAAGLPVAESVVVPREQAAH 126

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            H++ PPYVIKP+  GSS+G+ +++   + P   L S+ WN GD+++ E+Y+ G ELTC 
Sbjct: 127 GHVMDPPYVIKPVSEGSSVGVFIVRAGDNRPPAELTSAEWNLGDEVMAERYIAGRELTCA 186

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           VMG+    VTEI +  + FY YE KY +  S H++PA I  DIY EVQR+   AH+A+GC
Sbjct: 187 VMGEEIFGVTEI-IANTTFYDYEAKYQTGGSRHIIPAPIDADIYAEVQRVTLAAHKALGC 245

Query: 241 RGISRSDFLFD---PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           RG+SR+DF FD   P   ++  LE+N QPGMTP S+ PE+A  AGYS+ EL+ WMVE+AS
Sbjct: 246 RGVSRADFRFDDTRPGKPELILLEVNTQPGMTPTSLVPELANLAGYSYGELVSWMVEEAS 305

Query: 298 CLR 300
           C R
Sbjct: 306 CDR 308


>gi|254470440|ref|ZP_05083844.1| D-alanine--D-alanine ligase B [Pseudovibrio sp. JE062]
 gi|211960751|gb|EEA95947.1| D-alanine--D-alanine ligase B [Pseudovibrio sp. JE062]
          Length = 307

 Score =  372 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 155/303 (51%), Positives = 219/303 (72%), Gaps = 3/303 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG  +ER VSLSSGK CA ALE AG++V+++DVDR++  VL  LKPD+AFN LHG
Sbjct: 5   VAVLMGGWVAERPVSLSSGKDCADALEAAGYQVTRVDVDRNISAVLQDLKPDVAFNALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG +Q ILE+L+IPYTHSG+++SAL+M K ++K V+ + GVPV  S++V+R     
Sbjct: 65  PFGEDGAIQGILEVLDIPYTHSGVMSSALAMHKEKAKAVMKAAGVPVANSLVVSRADAAR 124

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +H++ PPYVIKP+  GSS G++++K+ Q  P   L    W +G+ L++E+Y+ G ELTC 
Sbjct: 125 RHVMEPPYVIKPINEGSSFGVLIVKEGQEYPPQELTRDDWEYGELLMVERYIPGRELTCA 184

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           VMGD +L V EI      +Y Y+ KY    S H+LPA+I   +Y+E+Q+ +  AH A+GC
Sbjct: 185 VMGDVALGVLEIVPLGHAYYDYDAKYVPGGSQHILPAEILPSVYQEIQKSSLKAHHALGC 244

Query: 241 RGISRSDFLFDPLS---RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           RG++R+DF F+       ++  LE+N QPGMTP S+ PE+AA+AG+ F+EL+ W+VEDAS
Sbjct: 245 RGVTRADFRFNEGPGGLGELICLEVNTQPGMTPTSLLPEIAAHAGHDFQELVSWIVEDAS 304

Query: 298 CLR 300
           C R
Sbjct: 305 CGR 307


>gi|114705266|ref|ZP_01438174.1| D-alanine-D-alanine ligase protein [Fulvimarina pelagi HTCC2506]
 gi|114540051|gb|EAU43171.1| D-alanine-D-alanine ligase protein [Fulvimarina pelagi HTCC2506]
          Length = 307

 Score =  372 bits (955), Expect = e-101,   Method: Composition-based stats.
 Identities = 170/303 (56%), Positives = 221/303 (72%), Gaps = 3/303 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG+SSER VSL SG+ACA+ALE  GF+VS++DVDR V   LA LKPD+AFN LHG
Sbjct: 5   VAVLMGGLSSERPVSLRSGEACAAALEGEGFQVSRVDVDRKVAETLATLKPDVAFNALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG +Q ILE L+IPYTHSG+ ASAL+M+K+ +K VV S GVPV    ++ R  +  
Sbjct: 65  PYGEDGRIQGILEYLQIPYTHSGVTASALAMNKLLAKTVVISAGVPVAKGHVMKRQEIAD 124

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            H  SPPYVIKP+  GSS G+I++++DQ  P   L S  W  G+ LL+EQ+V G ELTC 
Sbjct: 125 THPFSPPYVIKPIAEGSSFGVIIVREDQPHPPQSLSSPEWTFGEDLLVEQFVHGRELTCA 184

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           VMGD +LDV EI      FY Y+ KYS   S H++PA+IP D+ +++Q  + LAH+AIGC
Sbjct: 185 VMGDVALDVCEITTEGHAFYDYDSKYSDGGSVHIVPAEIPGDVARKIQEWSLLAHRAIGC 244

Query: 241 RGISRSDFLFDP---LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           RG++RSDF +D       +V WLE+N QPGMTPVS+ P++AA +G+SF +L+ WMVEDAS
Sbjct: 245 RGVTRSDFRYDDRFGSGGEVAWLEVNTQPGMTPVSLVPDIAAKSGHSFADLVRWMVEDAS 304

Query: 298 CLR 300
           C R
Sbjct: 305 CER 307


>gi|254562111|ref|YP_003069206.1| D-alanine--D-alanine ligase [Methylobacterium extorquens DM4]
 gi|254269389|emb|CAX25355.1| D-alanine--D-alanine ligase [Methylobacterium extorquens DM4]
          Length = 307

 Score =  372 bits (955), Expect = e-101,   Method: Composition-based stats.
 Identities = 157/303 (51%), Positives = 212/303 (69%), Gaps = 3/303 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSERE+SL SG ACA ALE  G++V+++DV   +  VL  LKPD A N LHG
Sbjct: 5   VAVLMGGWSSEREISLRSGNACAEALEGEGYRVTRVDVGPDIATVLTELKPDAALNALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LE+L+IPYTHSG+LASAL+M K R+K V+ + GV V    +VNR     
Sbjct: 65  PAGEDGTIQGLLEILKIPYTHSGVLASALAMHKERAKTVMRAAGVSVPEGRVVNRHDAAK 124

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            H ++PPYV+KP+  GSS+G+I+++ ++S P  +L S  W +G+++L E YV G ELTC 
Sbjct: 125 SHPLTPPYVVKPIAEGSSMGVIIVRDERSHPPQILASDEWVYGEEVLAETYVAGRELTCA 184

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V+GD +L VTEI     ++Y ++ KY+   S HVLPA + L+IY+ VQ LA  AHQA+GC
Sbjct: 185 VLGDRALGVTEIKPVSGEWYDFDAKYAGGGSIHVLPADLKLNIYQRVQELALTAHQALGC 244

Query: 241 RGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           RG+SR+D  +D     +  +  LE+N QPGMT  S+ PE+AA+AG SF EL+ WMVEDAS
Sbjct: 245 RGVSRADLRYDDTPGGTGALVVLEVNTQPGMTQTSLVPEIAAHAGQSFGELVRWMVEDAS 304

Query: 298 CLR 300
             R
Sbjct: 305 LNR 307


>gi|218531123|ref|YP_002421939.1| D-alanine--D-alanine ligase [Methylobacterium chloromethanicum CM4]
 gi|254767733|sp|B7KSC6|DDL_METC4 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|218523426|gb|ACK84011.1| D-alanine/D-alanine ligase [Methylobacterium chloromethanicum CM4]
          Length = 307

 Score =  371 bits (954), Expect = e-101,   Method: Composition-based stats.
 Identities = 156/303 (51%), Positives = 213/303 (70%), Gaps = 3/303 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSERE+SL SG ACA+ALE  G++V+++DV   +  VL  L+PD A N LHG
Sbjct: 5   VAVLMGGWSSEREISLRSGNACAAALEGEGYRVTRVDVGPDIATVLTELRPDAALNALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LE+L+IPYTHSG+LASAL+M K R+K V+ + GV V    +VNR     
Sbjct: 65  PAGEDGTIQGLLEILKIPYTHSGVLASALAMHKERAKTVMRAAGVSVPEGRVVNRHDAAK 124

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            H ++PPYV+KP+  GSS+G+I+++ ++S P  +L S  W +G+++L E YV G ELTC 
Sbjct: 125 SHPLTPPYVVKPIAEGSSMGVIIVRDERSHPPQILASDEWVYGEEVLAETYVAGRELTCA 184

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V+GD +L VTEI     ++Y ++ KY+   S HVLPA + L+IY+ VQ LA  AHQA+GC
Sbjct: 185 VLGDRALGVTEIKPVSGEWYDFDAKYAGGGSIHVLPADLKLNIYQRVQELALTAHQALGC 244

Query: 241 RGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           RG+SR+D  +D     +  +  LE+N QPGMT  S+ PE+AA+AG SF EL+ WMVEDAS
Sbjct: 245 RGVSRADLRYDDTPGGTGALVVLEVNTQPGMTQTSLVPEIAAHAGQSFGELVRWMVEDAS 304

Query: 298 CLR 300
             R
Sbjct: 305 LNR 307


>gi|323137889|ref|ZP_08072964.1| D-alanine/D-alanine ligase [Methylocystis sp. ATCC 49242]
 gi|322396892|gb|EFX99418.1| D-alanine/D-alanine ligase [Methylocystis sp. ATCC 49242]
          Length = 307

 Score =  371 bits (954), Expect = e-101,   Method: Composition-based stats.
 Identities = 159/303 (52%), Positives = 212/303 (69%), Gaps = 3/303 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG+S+ERE+SL SG+ACA ALE+  ++VS++DV      VLA L+PD+AFN LHG
Sbjct: 5   VAVLMGGLSAEREISLRSGEACAKALEEQAYRVSRVDVGHDAASVLAALEPDVAFNALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG +Q +LELL IPYTHSG+LAS+++M K  +K V+++ GVPV    +V+R     
Sbjct: 65  KFGEDGCIQGVLELLRIPYTHSGVLASSVAMKKDVAKVVMAAAGVPVPKGRVVHRLEAAK 124

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            H++  PYV+KP+  GSS G+ +I    + P   L  + W HGD +L EQ++ G ELTC 
Sbjct: 125 AHVLPVPYVLKPISEGSSFGVFIITDGDAPPPRELARADWAHGDLMLAEQFIAGRELTCA 184

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           VMGD +LDV EI      +Y Y  KY+   S HVLPA +  +IY+EVQ LA  AH+A+GC
Sbjct: 185 VMGDRALDVIEILAADGGWYDYHAKYAKGGSKHVLPANLKQNIYQEVQHLAIEAHRALGC 244

Query: 241 RGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           RG+SR+DF +D     + ++  LE+N QPGMT  S+ PEMAAYAG+SF EL+ WMVEDAS
Sbjct: 245 RGVSRADFRYDDRPGGTGELVVLEVNTQPGMTETSLVPEMAAYAGFSFGELVRWMVEDAS 304

Query: 298 CLR 300
           C R
Sbjct: 305 CDR 307


>gi|240139699|ref|YP_002964176.1| D-alanine--D-alanine ligase [Methylobacterium extorquens AM1]
 gi|240009673|gb|ACS40899.1| D-alanine--D-alanine ligase [Methylobacterium extorquens AM1]
          Length = 307

 Score =  371 bits (954), Expect = e-101,   Method: Composition-based stats.
 Identities = 156/303 (51%), Positives = 212/303 (69%), Gaps = 3/303 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSERE+SL SG ACA ALE  G++V+++DV   +  VL  L+PD A N LHG
Sbjct: 5   VAVLMGGWSSEREISLRSGNACAEALEGEGYRVTRVDVGPDIATVLTELRPDAALNALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LE+L+IPYTHSG+LASAL+M K R+K V+ + GV V    +VNR     
Sbjct: 65  PAGEDGTIQGLLEILKIPYTHSGVLASALAMHKERAKTVMRAAGVSVPEGRVVNRHDAAK 124

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            H ++PPYV+KP+  GSS+G+I+++ ++S P  +L S  W +G+++L E YV G ELTC 
Sbjct: 125 SHPLTPPYVVKPIAEGSSMGVIIVRDERSHPPQILASDEWVYGEEVLAETYVAGRELTCA 184

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V+GD +L VTEI     ++Y ++ KY+   S HVLPA + L+IY+ VQ LA  AHQA+GC
Sbjct: 185 VLGDRALGVTEIKPVSGEWYDFDAKYAGGGSIHVLPADLKLNIYQRVQELALTAHQALGC 244

Query: 241 RGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           RG+SR+D  +D     +  +  LE+N QPGMT  S+ PE+AA+AG SF EL+ WMVEDAS
Sbjct: 245 RGVSRADLRYDDTPGGTGALVVLEVNTQPGMTQTSLVPEIAAHAGQSFGELVRWMVEDAS 304

Query: 298 CLR 300
             R
Sbjct: 305 LNR 307


>gi|83858912|ref|ZP_00952434.1| D-alanine--D-alanine ligase B [Oceanicaulis alexandrii HTCC2633]
 gi|83853735|gb|EAP91587.1| D-alanine--D-alanine ligase B [Oceanicaulis alexandrii HTCC2633]
          Length = 304

 Score =  371 bits (953), Expect = e-101,   Method: Composition-based stats.
 Identities = 145/299 (48%), Positives = 198/299 (66%), Gaps = 2/299 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-DRSVGLVLAHLKPDLAFNVLH 59
           +AVL+GG S ER+VSL SG+    ALE  G++VS ID  D      L  +KPD+ FN LH
Sbjct: 5   VAVLLGGRSPERDVSLVSGRKVIEALEAKGYQVSPIDPRDHDWIDQLDGVKPDVVFNALH 64

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G++GEDG VQ +L+ L  PYTHSG+ ASAL+MDK R+K V+   G+      L++RF   
Sbjct: 65  GDWGEDGRVQGVLDYLGYPYTHSGVAASALAMDKQRAKAVLREAGIQCPEGQLISRFEAA 124

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
             H++ PPYV KP   GSS+G++++ +  + P  +L S  W + +++LIE+++ G ELT 
Sbjct: 125 RDHVMKPPYVAKPNAQGSSVGVVIVPEGANRPPAILGSEDWPYDEEVLIERFIPGRELTV 184

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
            VMGD  L VTEI VPK+ FY Y+ KYS   S H LPA +P  ++ E    A  AHQ +G
Sbjct: 185 AVMGDKPLTVTEI-VPKTAFYDYDAKYSDGGSVHQLPADVPQAVFDECMAEALKAHQVLG 243

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           CRG++RSDF +DP +  V+ LEIN QPGMTP S+ PE AA+ G  F +L+ WMVE+A+C
Sbjct: 244 CRGLTRSDFRYDPETGGVWLLEINTQPGMTPTSLAPEQAAHCGIGFPDLVAWMVENAAC 302


>gi|146276749|ref|YP_001166908.1| D-alanine--D-alanine ligase [Rhodobacter sphaeroides ATCC 17025]
 gi|190359210|sp|A4WQD9|DDL_RHOS5 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|145554990|gb|ABP69603.1| D-alanine--D-alanine ligase [Rhodobacter sphaeroides ATCC 17025]
          Length = 307

 Score =  370 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 147/302 (48%), Positives = 201/302 (66%), Gaps = 8/302 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSEREVSLSSG +C++AL DAG++V+++D    +  VLA ++PD  FN LHG
Sbjct: 12  VAVLMGGTSSEREVSLSSGHSCSAALRDAGYEVTEVDAGPDLARVLAEVQPDAVFNALHG 71

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG VQ +LE L IPYTHSG+LASAL+MDK R+K+V ++ G+PV  S++     + +
Sbjct: 72  RWGEDGCVQGLLEWLRIPYTHSGVLASALAMDKARAKEVFAAAGLPVTQSVIATPDEVQA 131

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            H++ PPYV+KP   GSS+G+ +++ D + P  L    + +    L++E Y+ G ELT  
Sbjct: 132 GHVLPPPYVVKPNCEGSSVGVYIVQADANGPPRL----APDMPRDLMVETYIPGRELTVT 187

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           VMGD +L VT+I      +Y Y+ KY    S HV+PA++P +I      +A  AH+A+GC
Sbjct: 188 VMGDRALAVTDIVT--DGWYDYDAKYRPGGSRHVVPAELPAEITDACLDIALRAHRALGC 245

Query: 241 RGISRSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           RGISRSD  +D       +  LE N QPGMTP S+ PE AA+ G SF E   WMVEDASC
Sbjct: 246 RGISRSDLRWDESRGAEGLILLETNTQPGMTPTSLSPEQAAHCGLSFPEFCAWMVEDASC 305

Query: 299 LR 300
            R
Sbjct: 306 NR 307


>gi|77462663|ref|YP_352167.1| D-alanine--D-alanine ligase [Rhodobacter sphaeroides 2.4.1]
 gi|126461556|ref|YP_001042670.1| D-alanine--D-alanine ligase [Rhodobacter sphaeroides ATCC 17029]
 gi|123592597|sp|Q3J4L8|DDL_RHOS4 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|190359209|sp|A3PHT2|DDL_RHOS1 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|77387081|gb|ABA78266.1| D-alanine--D-alanine ligase [Rhodobacter sphaeroides 2.4.1]
 gi|126103220|gb|ABN75898.1| D-alanine--D-alanine ligase [Rhodobacter sphaeroides ATCC 17029]
          Length = 307

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 148/302 (49%), Positives = 200/302 (66%), Gaps = 8/302 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG S+EREVSLSSG +C++AL DAG++V+++D    +  VLA L PD  FN LHG
Sbjct: 12  VAVLMGGASTEREVSLSSGHSCSAALRDAGYEVTEVDAGPDLARVLAELSPDAVFNALHG 71

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG VQ +LE L IPYTHSG+LASAL+MDK R+K+V ++ G+PV  S+L     + +
Sbjct: 72  RWGEDGCVQGLLEWLRIPYTHSGVLASALAMDKARAKEVFAAAGLPVTQSVLATPEEVRA 131

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +H++ PPYV+KP   GSS+G+ ++ +D + P  L      +    L++E YV G ELT  
Sbjct: 132 RHILPPPYVVKPNAEGSSVGVYIVHEDANGPPQLAA----DMPQDLMVETYVPGRELTVT 187

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           VMGD  L VT+I      +Y Y+ KY    S H++PA +P +I +    +A  AH+A+GC
Sbjct: 188 VMGDRVLAVTDIL--SDGWYDYDAKYRPGGSRHIVPADLPAEITEACHDIALRAHRALGC 245

Query: 241 RGISRSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           RGISRSD  +D       +  LE N QPGMTP S+ PE AA+ GYSF E   W+VEDASC
Sbjct: 246 RGISRSDLRWDEARGLAGLILLETNTQPGMTPTSLSPEQAAHCGYSFPEFCAWLVEDASC 305

Query: 299 LR 300
            R
Sbjct: 306 SR 307


>gi|163852363|ref|YP_001640406.1| D-alanine--D-alanine ligase [Methylobacterium extorquens PA1]
 gi|226696389|sp|A9VWV8|DDL_METEP RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|163663968|gb|ABY31335.1| D-alanine--D-alanine ligase [Methylobacterium extorquens PA1]
          Length = 307

 Score =  368 bits (946), Expect = e-100,   Method: Composition-based stats.
 Identities = 155/303 (51%), Positives = 212/303 (69%), Gaps = 3/303 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSERE+SL SG ACA ALE  G++V++++V   +  VL  L+PD A N LHG
Sbjct: 5   VAVLMGGWSSEREISLRSGNACAEALEGEGYRVTRVNVGPDIATVLTELRPDAALNALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LE+L+IPYTHSG+LASAL+M K R+K V+ + GV V    +VNR     
Sbjct: 65  PAGEDGTIQGLLEILKIPYTHSGVLASALAMHKERAKTVMRAAGVSVPEGRVVNRHDAAK 124

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            H ++PPYV+KP+  GSS+G+I+++ ++S P  +L S  W +G+++L E YV G ELTC 
Sbjct: 125 SHPLTPPYVVKPIAEGSSMGVIIVRDERSHPPQILASDEWVYGEEVLAETYVAGRELTCA 184

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V+GD +L VTEI     ++Y ++ KY+   S HVLPA + L+IY+ VQ LA  AHQA+GC
Sbjct: 185 VLGDRALGVTEIKPVSGEWYDFDAKYAGGGSIHVLPADLKLNIYQRVQELALTAHQALGC 244

Query: 241 RGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           RG+SR+D  +D     +  +  LE+N QPGMT  S+ PE+AA+AG SF EL+ WMVEDAS
Sbjct: 245 RGVSRADLRYDDTPGGTGALVVLEVNTQPGMTQTSLVPEIAAHAGQSFGELVRWMVEDAS 304

Query: 298 CLR 300
             R
Sbjct: 305 LNR 307


>gi|114570624|ref|YP_757304.1| D-alanine--D-alanine ligase [Maricaulis maris MCS10]
 gi|122315584|sp|Q0AMX1|DDL_MARMM RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|114341086|gb|ABI66366.1| D-alanine--D-alanine ligase [Maricaulis maris MCS10]
          Length = 304

 Score =  368 bits (946), Expect = e-100,   Method: Composition-based stats.
 Identities = 151/301 (50%), Positives = 201/301 (66%), Gaps = 2/301 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG+S ER+VSL +G ACA  L DAG++V +ID  R +   LA   PD+ FN LHG
Sbjct: 5   IAVLMGGLSPERDVSLVTGAACAKGLRDAGYEVVEIDAGRHLSQQLADADPDVVFNALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDGLVQ +LE    PYTHSG+LASAL+MDK ++K V+ + G+P    I+ NRF    
Sbjct: 65  EWGEDGLVQGVLEHFGKPYTHSGVLASALAMDKQKAKDVLRAAGIPCPEGIIANRFEAAK 124

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            H++ PPYV KP   GSS+G+ ++ +  + P   L S++W  GD++LIE+YV G ELT  
Sbjct: 125 AHVMKPPYVAKPNAQGSSVGVHIVLEGANRPPAELGSTAWALGDEILIERYVPGRELTVA 184

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           VM D +L VTEI  P + FY YE KY++  S H+LPA I  +I +    LA  AH+A+GC
Sbjct: 185 VMEDRALCVTEIK-PNTTFYDYEAKYTAGGSDHILPAPISAEIAELAMDLAVRAHRALGC 243

Query: 241 RGISRSDFLFD-PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
           RG++RSDF +D      ++ LEIN QPGMTP S+ PE A Y G  F +L+ WM E+ASC 
Sbjct: 244 RGMTRSDFRYDSAADTPLWLLEINTQPGMTPTSLAPEQAQYCGIEFSDLVAWMAENASCR 303

Query: 300 R 300
           R
Sbjct: 304 R 304


>gi|212712759|ref|ZP_03320887.1| hypothetical protein PROVALCAL_03856 [Providencia alcalifaciens DSM
           30120]
 gi|212684675|gb|EEB44203.1| hypothetical protein PROVALCAL_03856 [Providencia alcalifaciens DSM
           30120]
          Length = 306

 Score =  366 bits (941), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 115/306 (37%), Positives = 165/306 (53%), Gaps = 13/306 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL SG A  + L  AG     ID      + L     D AF  LHG
Sbjct: 5   IAVLFGGTSAEREVSLQSGNAVLAGLRQAGIDAHPIDTQDFPVVTLKEAGFDKAFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LE + +PYT SG++ASALSMDK+R+KQ+    G+ V P I +NR    +
Sbjct: 65  RGGEDGTIQGMLEFMGLPYTGSGVMASALSMDKLRTKQLWQGAGLSVSPYISLNRQKYTN 124

Query: 121 QHL---------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P ++KP   GSS+G+  +     +P  +    ++   D LLIE++
Sbjct: 125 IKKEQLAQQVKHLGLPLIVKPSLEGSSVGMSKVDSLDELPEAI--ELAFQFDDTLLIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  V+GD  L    I  P   FY YE KY S  + +  P+ +  D+  ++  +A
Sbjct: 183 LSGPEYTVAVLGDEVLPSIRIQPP-GIFYDYEAKYLSDETQYFCPSGLTNDLEAKLADMA 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A+QA+GCRG  R D + D    + + LE+N  PGMT  S+ P  A  AG  F +L++ 
Sbjct: 242 MKAYQAVGCRGWGRVDVMQD-SDGEFYLLEVNTSPGMTSHSLVPMAARQAGMDFSQLVVR 300

Query: 292 MVEDAS 297
           ++E AS
Sbjct: 301 ILELAS 306


>gi|254503140|ref|ZP_05115291.1| putative D-ala D-ala ligase N-terminal domain protein [Labrenzia
           alexandrii DFL-11]
 gi|222439211|gb|EEE45890.1| putative D-ala D-ala ligase N-terminal domain protein [Labrenzia
           alexandrii DFL-11]
          Length = 327

 Score =  365 bits (937), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 158/303 (52%), Positives = 215/303 (70%), Gaps = 3/303 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG  +ER VSLSSGK CA ALE+AG++VS++DVDR+V  VL  L+PD+AFN LHG
Sbjct: 25  VAVLMGGWVNERPVSLSSGKECAIALEEAGYRVSRVDVDRNVSAVLTELQPDVAFNALHG 84

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG VQ ILE L IPYTHSG++AS+L+M+K+++K V+++ G+PV    +VNR  +  
Sbjct: 85  PFGEDGCVQGILEFLNIPYTHSGVMASSLAMNKVKAKAVMAAAGIPVTEHKVVNRHDISR 144

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +H + PPYV+KP+  GSS G++++K+DQ  P   L    W + D L+ E+++ G ELTC 
Sbjct: 145 EHPMEPPYVLKPINEGSSFGVLIVKEDQEFPPQELHREDWPYPDVLMCEKFIRGRELTCA 204

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V  D +L V +I     +FY ++ KY+   S H+LPAKI   +Y+  + LA  AHQA+GC
Sbjct: 205 VKDDQALGVIDIVTQGQEFYDFDAKYAEGGSKHILPAKISPLVYQTAETLAVKAHQALGC 264

Query: 241 RGISRSDFLFDPLS---RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           RG+SR+DF FD        +  LE+N QPGMTP S+ PEMAAY G SF++L+ WMVEDAS
Sbjct: 265 RGVSRADFRFDEREDGSGDLICLEVNTQPGMTPTSLVPEMAAYKGMSFKDLVSWMVEDAS 324

Query: 298 CLR 300
           C R
Sbjct: 325 CCR 327


>gi|254467284|ref|ZP_05080695.1| D-alanine--D-alanine ligase [Rhodobacterales bacterium Y4I]
 gi|206688192|gb|EDZ48674.1| D-alanine--D-alanine ligase [Rhodobacterales bacterium Y4I]
          Length = 294

 Score =  364 bits (935), Expect = 9e-99,   Method: Composition-based stats.
 Identities = 147/299 (49%), Positives = 196/299 (65%), Gaps = 8/299 (2%)

Query: 4   LMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFG 63
           LMGG S+EREVSLSSG+ CA+AL   GF+V ++D  R +   LA +KPD+ FN LHG +G
Sbjct: 2   LMGGPSAEREVSLSSGRECAAALRGEGFEVVEVDAGRDLHARLAEVKPDVVFNALHGRWG 61

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
           EDG VQ +LE L IPYTHSG+LASAL+MDK RSK+V  S G+PV  S L  +  + + H+
Sbjct: 62  EDGCVQGLLEWLGIPYTHSGVLASALAMDKQRSKEVYRSAGLPVVESGLFAKEDVTAGHV 121

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           ++PPYV+KP   GSS+GI ++ +  + P  L ++       Q+++E Y  G ELT  V+G
Sbjct: 122 MAPPYVVKPNNEGSSVGIYIVHEAANGPPQLSEA----MPQQVMVETYAPGRELTTTVIG 177

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D +L VT+I      +Y Y+ KY    S HVLPA +P +I+      A  AH+A+GCRG+
Sbjct: 178 DRALTVTDILT--DGWYDYDAKYKPGGSRHVLPADLPREIHDLCLEYALKAHEALGCRGV 235

Query: 244 SRSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           SR+DF +D       +  LE N QPGMTP S+ PE AA+ G SF +L  WMVEDASC R
Sbjct: 236 SRTDFRWDETRGASGLVLLETNTQPGMTPTSLVPEQAAFCGMSFGQLCAWMVEDASCNR 294


>gi|56696094|ref|YP_166448.1| D-alanine--D-alanine ligase [Ruegeria pomeroyi DSS-3]
 gi|81350282|sp|Q5LU57|DDL_SILPO RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|56677831|gb|AAV94497.1| D-alanine--D-alanine ligase [Ruegeria pomeroyi DSS-3]
          Length = 306

 Score =  364 bits (934), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 143/302 (47%), Positives = 196/302 (64%), Gaps = 8/302 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG S+EREVSL SG+ CA+AL   GF+V ++D    +   L    PD+ FN LHG
Sbjct: 11  VAVLMGGPSAEREVSLVSGRECAAALRGEGFEVVELDAGSDLCDRLRASAPDVVFNALHG 70

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG VQ +LE L IPYT SG+LASAL+MDK RSK+   + G+PV  S L +R  +++
Sbjct: 71  RWGEDGCVQGLLEWLRIPYTSSGVLASALAMDKERSKEAYRAAGLPVAASQLADRAAIEA 130

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            H++ PPYV+KP   GSS+G+ ++ +  + P  L    + +    L++E+YV G EL+  
Sbjct: 131 AHVMQPPYVVKPYNEGSSVGVYIVTEAANGPPVL----APDLPATLMVEEYVPGRELSTT 186

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V+GD +L+VT+I      +Y Y  KYS   S HV+PA +P +I++     A  AH+A+GC
Sbjct: 187 VLGDRALNVTDIIT--DGWYDYHAKYSPGGSRHVIPADLPPEIFELCLDYALRAHKALGC 244

Query: 241 RGISRSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           RG+SR+DF +D       +F LE N QPGMTP S+ PE A  AG SF +L  WMVEDASC
Sbjct: 245 RGLSRTDFRWDESRGAAGLFLLETNTQPGMTPTSLAPEQALAAGMSFGQLCAWMVEDASC 304

Query: 299 LR 300
            R
Sbjct: 305 DR 306


>gi|209963942|ref|YP_002296857.1| D-alanine--D-alanine ligase B [Rhodospirillum centenum SW]
 gi|209957408|gb|ACI98044.1| D-alanine--D-alanine ligase B [Rhodospirillum centenum SW]
          Length = 315

 Score =  364 bits (934), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 145/303 (47%), Positives = 210/303 (69%), Gaps = 8/303 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL--KPDLAFNVL 58
           +AVLMGG S+ER+VSL SG++ A+ALE+ G+ V+ +DV R +  +L  L  KPD+ FN L
Sbjct: 14  VAVLMGGWSAERDVSLVSGRSVAAALEERGYAVTAVDVQRDLPALLHALTPKPDVVFNAL 73

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
           HG  GEDGL+Q +LE L +PYTHSG+LASAL+M+K  +++V+++ GVPV   + V R  +
Sbjct: 74  HGRGGEDGLIQGVLEYLGVPYTHSGVLASALAMNKEMTRRVLAAVGVPVPDGVTVTREQI 133

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            + H I PPYV+KP+  GSS+G+ +++  Q+    +L+   W +G+++L+E+++ G ELT
Sbjct: 134 LAGHPIEPPYVVKPVDEGSSVGVRIVRPGQN--QSVLEEGGWAYGERVLVERFIPGRELT 191

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
            GVMGD +L VTEI VP+S F+ Y  KY+   + HV PA+IP D+ +E  RLA LAH+ +
Sbjct: 192 VGVMGDRALAVTEI-VPRSGFFDYAAKYTEGEAVHVCPAQIPQDVQEEALRLALLAHRTL 250

Query: 239 GCRGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           GC G+SRSDF +D     +  +++LE N QPG T +S+ PE AA  G  F EL  W+VE 
Sbjct: 251 GCSGVSRSDFRWDDSQAGTGGLYFLETNTQPGFTALSLLPEQAASQGIGFAELCAWIVEQ 310

Query: 296 ASC 298
           A C
Sbjct: 311 ARC 313


>gi|298293095|ref|YP_003695034.1| D-alanine/D-alanine ligase [Starkeya novella DSM 506]
 gi|296929606|gb|ADH90415.1| D-alanine/D-alanine ligase [Starkeya novella DSM 506]
          Length = 306

 Score =  363 bits (933), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 158/303 (52%), Positives = 214/303 (70%), Gaps = 4/303 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSER+VSL SG+ACA A E  G++V+++DV R +  VL  LKPD+A N LHG
Sbjct: 5   VAVLMGGWSSERQVSLWSGEACAKAAESVGYRVTRVDVGRDIAQVLTELKPDVALNALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG +Q +LE L++PYTHSG+LASAL+MDK ++K ++++  VPV    +V R     
Sbjct: 65  PYGEDGTIQGVLEFLQVPYTHSGVLASALAMDKAQAKIILAASDVPVPEGRVVTRAEAAR 124

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            H++  PYV+KP+  GSS+G+ +IK+DQ  P   L    W HGD LL E+Y+ G+ELTC 
Sbjct: 125 GHVLPRPYVLKPVSEGSSVGVFIIKEDQEHPPQELHRPDWPHGDLLLAERYIPGLELTCA 184

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           VMGD +L V EI      FY YE KY+   S H+LPA+I  ++Y++V+ LA  AH+A+GC
Sbjct: 185 VMGDEALGVIEIQ-SDLRFYDYEAKYTPGGSVHILPARILPNVYQKVRMLAVKAHRALGC 243

Query: 241 RGISRSDFLFDPLSRK---VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           RGISRSDF +D  +     +  LE+N QPGMT +S+ PE+AA+AG+SF EL+ WMVEDAS
Sbjct: 244 RGISRSDFRYDDRTGDESGLVCLEVNTQPGMTELSLVPELAAHAGHSFGELVRWMVEDAS 303

Query: 298 CLR 300
             R
Sbjct: 304 LDR 306


>gi|254292779|ref|YP_003058802.1| D-alanine/D-alanine ligase [Hirschia baltica ATCC 49814]
 gi|254041310|gb|ACT58105.1| D-alanine/D-alanine ligase [Hirschia baltica ATCC 49814]
          Length = 302

 Score =  363 bits (932), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 140/300 (46%), Positives = 200/300 (66%), Gaps = 1/300 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AV+MGG SSEREVSLSSG+  A A  + GF V +ID+ R +   L    PD+  N LHG
Sbjct: 4   VAVIMGGWSSEREVSLSSGRGMAQAARNEGFDVVEIDITRDLSNQLKEANPDVVLNALHG 63

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG VQ +LE+LEIPY+HSG+LASAL+MDK +S+ V +  G+ V    +  +  + +
Sbjct: 64  PYGEDGCVQGLLEILEIPYSHSGVLASALAMDKAKSRNVYARMGLLVAEGGVYAKEDVAA 123

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +H++ PPYV+KP+  GSS G++++ +  + P   L    W  GD +L+EQ++ G ELT  
Sbjct: 124 EHVMKPPYVVKPIAEGSSFGVLIVPEGANRPPAELLDPKWGFGDSVLVEQFIPGRELTVS 183

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           VMG+ +L VTEI   + D+Y Y  KY +  S HV+PA+I   + +     A +AH A+GC
Sbjct: 184 VMGNEALAVTEITTLR-DYYDYSAKYEAGGSKHVIPAEISDAVTQAALDAALIAHDALGC 242

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           RG+SRSDF +D  ++++  LE N QPGMTP S+ PE AA+ G S+ +L+ WM+EDASC R
Sbjct: 243 RGVSRSDFRYDDDTKRLVILETNTQPGMTPTSLVPEQAAHKGISYEKLVRWMIEDASCHR 302


>gi|329888138|ref|ZP_08266736.1| D-alanine--D-alanine ligase family protein [Brevundimonas diminuta
           ATCC 11568]
 gi|328846694|gb|EGF96256.1| D-alanine--D-alanine ligase family protein [Brevundimonas diminuta
           ATCC 11568]
          Length = 312

 Score =  362 bits (931), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 152/303 (50%), Positives = 207/303 (68%), Gaps = 3/303 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG+SSEREVSLSSG+ CA ALE    KV+++D  R +  VL  LKPD+ FN LHG
Sbjct: 10  VAVLMGGLSSEREVSLSSGRGCADALEGQVAKVTRVDAGRDLAQVLTALKPDVVFNALHG 69

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG VQ ILE L+IPYTHSG+LASAL+MDK +SK V+ + GV V    L +R  + S
Sbjct: 70  KWGEDGCVQGILETLKIPYTHSGVLASALAMDKDKSKAVLQAAGVIVPGGGLFDRHEVAS 129

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +H+I PPYV+KP   GSS+G+ V ++  + P+  + +  W +GDQ+++E ++ G EL   
Sbjct: 130 RHVIEPPYVVKPNAEGSSVGVYVAREGANRPVAEVGAEDWAYGDQVMVEPFIPGKELAVS 189

Query: 181 VMGDASLD---VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           V+G+A+           P   FY YE KY+   S HVLPA++P  ++ +  R A LAH A
Sbjct: 190 VIGEATGPRALTITDITPTKGFYDYEAKYAPGGSRHVLPAELPPHVFDKALRQAELAHAA 249

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           +GCRG+SR+DF +D ++  +  LE+N QPGMTP S+ PE AA+ G  +REL+ WMVEDAS
Sbjct: 250 MGCRGVSRADFRYDDVNDVLVLLEVNTQPGMTPTSLVPEQAAFVGMDYRELVRWMVEDAS 309

Query: 298 CLR 300
           C R
Sbjct: 310 CPR 312


>gi|294676380|ref|YP_003576995.1| D-alanine--D-alanine ligase [Rhodobacter capsulatus SB 1003]
 gi|294475200|gb|ADE84588.1| D-alanine--D-alanine ligase [Rhodobacter capsulatus SB 1003]
          Length = 307

 Score =  362 bits (931), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 144/302 (47%), Positives = 193/302 (63%), Gaps = 8/302 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG S+EREVSLSSG+ CA AL  AG+ V++ID    +   L  L PD+ FN LHG
Sbjct: 12  VAVLMGGPSAEREVSLSSGRECAKALRAAGYDVAEIDAGADLAERLRALMPDVVFNALHG 71

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG VQ ILE L +PYTHSG+LASAL+MDK R+K    + G+PV  S L ++  + +
Sbjct: 72  RWGEDGCVQGILEWLRLPYTHSGVLASALAMDKTRAKAAYKAAGLPVVESRLASKAEVMA 131

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            H++  PYV+KP   GSS+G+ ++    + P  L         + +++E Y  G ELTC 
Sbjct: 132 AHVLPAPYVVKPNNEGSSVGVYLVLDGANRPPQLSDE----MPEVVMVETYAPGRELTCT 187

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           VMGD +L VTEI    + +Y Y  KY++  S HV PA++P  I + ++  A  AH+A+GC
Sbjct: 188 VMGDRALCVTEIVT--TGWYDYAAKYTAGGSRHVCPAELPAGIAETIRDYALRAHRALGC 245

Query: 241 RGISRSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           RG+SR+DF +D       +  LE N QPGMTP S+ PE AA  G SF +L  WMVEDASC
Sbjct: 246 RGVSRTDFRWDESRGTAGLILLETNTQPGMTPTSLAPEQAAAEGMSFADLCRWMVEDASC 305

Query: 299 LR 300
            R
Sbjct: 306 DR 307


>gi|114799909|ref|YP_759123.1| D-alanine--D-alanine ligase [Hyphomonas neptunium ATCC 15444]
 gi|122942769|sp|Q0C570|DDL_HYPNA RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|114740083|gb|ABI78208.1| D-alanine--D-alanine ligase [Hyphomonas neptunium ATCC 15444]
          Length = 306

 Score =  362 bits (931), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 141/300 (47%), Positives = 201/300 (67%), Gaps = 1/300 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AV+ GG SSER VSLSSG+  A+A   AG+ V++IDV R +   LA  +PD+  N LHG
Sbjct: 8   VAVIYGGWSSERPVSLSSGQQMAAAARKAGYDVTEIDVTRELASQLAEAEPDVVLNGLHG 67

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG VQ +LE++ +PY+HSG+LASAL+MDK++SK V  S G+ V     V R    +
Sbjct: 68  PWGEDGCVQGLLEVMGLPYSHSGVLASALAMDKLKSKAVYRSAGLDVAADKRVTRAEAAA 127

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            H + PPYV+KP+  GSS G++++++  + P   L   +W +GD L+ E+Y+ G ELT  
Sbjct: 128 AHALPPPYVVKPVNEGSSFGVLIVREGANGPPHELTGPNWRYGDYLMAEEYIPGRELTVA 187

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V+GD +L VTEI   + D+Y ++ KY++  S HV+PA +P  + +     A LAH+A+GC
Sbjct: 188 VLGDRALAVTEITTLR-DYYDFDAKYAAGGSRHVIPADLPAKVTEAAMDAALLAHRALGC 246

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           RG +RSDF +D    ++  LE N QPGMTP S+ PE AA+ G SF +L+ WM+EDASC R
Sbjct: 247 RGATRSDFRYDEQKDRLVILETNTQPGMTPTSLVPEQAAHMGMSFEDLVAWMIEDASCQR 306


>gi|332557545|ref|ZP_08411867.1| D-alanine--D-alanine ligase [Rhodobacter sphaeroides WS8N]
 gi|332275257|gb|EGJ20572.1| D-alanine--D-alanine ligase [Rhodobacter sphaeroides WS8N]
          Length = 294

 Score =  362 bits (931), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 147/299 (49%), Positives = 197/299 (65%), Gaps = 8/299 (2%)

Query: 4   LMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFG 63
           LMGG S+EREVSLSSG +C++AL DAG++V+++D    +  VLA L PD  FN LHG +G
Sbjct: 2   LMGGASTEREVSLSSGHSCSAALRDAGYEVTEVDAGPDLARVLAELSPDAVFNALHGRWG 61

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
           EDG VQ +LE L IPYTHSG+LASAL+MDK R+K+V ++ G+PV  S+L     + ++HL
Sbjct: 62  EDGCVQGLLEWLRIPYTHSGVLASALAMDKARAKEVFAAAGLPVTQSVLATPEEVRARHL 121

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           + PPYV+KP   GSS+G+ ++ +D + P  L      +    L++E YV G ELT  VMG
Sbjct: 122 LPPPYVVKPNAEGSSVGVYIVHEDANGPPQLAA----DMPQDLMVETYVPGRELTVTVMG 177

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D  L VT+I      +Y Y+ KY    S H++PA +P +I +    +A  AH+A+GCRGI
Sbjct: 178 DRVLAVTDIL--SDGWYDYDAKYRPGGSRHIVPADLPAEITEACHDIALRAHRALGCRGI 235

Query: 244 SRSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           SRSD  +D       +  LE N QPGMTP S+ PE AA+ GYSF E   W+VEDASC R
Sbjct: 236 SRSDLRWDEARGLAGLILLETNTQPGMTPTSLSPEQAAHCGYSFPEFCAWLVEDASCSR 294


>gi|260434243|ref|ZP_05788214.1| D-alanine--D-alanine ligase B [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260418071|gb|EEX11330.1| D-alanine--D-alanine ligase B [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 296

 Score =  362 bits (930), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 147/301 (48%), Positives = 197/301 (65%), Gaps = 8/301 (2%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGN 61
           AVLMGG S+EREVSLSSG+ CA+AL   G +V ++D    +   L  +KPD+ FN LHG 
Sbjct: 2   AVLMGGPSAEREVSLSSGRECAAALVGEGIEVVELDAGPDLCARLQDIKPDVVFNALHGR 61

Query: 62  FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ 121
           +GEDG VQ +LE L +PYTHSG+LASAL+MDK RSK+V  + G+PV  S++V +  + + 
Sbjct: 62  WGEDGCVQGLLEWLRMPYTHSGVLASALAMDKQRSKEVFRAAGLPVADSVIVPKSDVMAG 121

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
           H++  PYV+KP   GSS+GI ++ +  + P  L      +  +Q+++EQYV G ELT  V
Sbjct: 122 HVMPAPYVVKPNNEGSSVGIYLVFEGSNGPPQLSD----DMPEQVMVEQYVAGRELTVTV 177

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241
           MGD +L VTEI      +Y Y+ KY    S HVLPA IP  I+      A  AHQ +GCR
Sbjct: 178 MGDRALTVTEILT--DGWYDYDAKYKPGGSRHVLPADIPPRIFDLCMDYALRAHQVLGCR 235

Query: 242 GISRSDFLFDPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
           G+SR+D+ +D    +  +F LE N QPGMTP S+ PE AA+ G +F +L  WMVEDASC 
Sbjct: 236 GVSRTDYRWDEARGEEGLFLLETNTQPGMTPTSLVPEQAAHLGMTFGQLCAWMVEDASCD 295

Query: 300 R 300
           R
Sbjct: 296 R 296


>gi|221638520|ref|YP_002524782.1| D-alanine--D-alanine ligase [Rhodobacter sphaeroides KD131]
 gi|221159301|gb|ACM00281.1| D-alanine--D-alanine ligase [Rhodobacter sphaeroides KD131]
          Length = 294

 Score =  362 bits (930), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 146/299 (48%), Positives = 197/299 (65%), Gaps = 8/299 (2%)

Query: 4   LMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFG 63
           LMGG S+EREVSLSSG +C++AL DAG++V+++D    +  VLA L PD  FN LHG +G
Sbjct: 2   LMGGASTEREVSLSSGHSCSAALRDAGYEVTEVDAGPDLARVLAELSPDAVFNALHGRWG 61

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
           EDG VQ +LE L IPYTHSG+LASAL+MDK R+K+V ++ G+PV  S+L     + ++H+
Sbjct: 62  EDGCVQGLLEWLRIPYTHSGVLASALAMDKARAKEVFAAAGLPVTQSVLATPEEVRARHI 121

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           + PPYV+KP   GSS+G+ ++ +D + P  L      +    L++E YV G ELT  VMG
Sbjct: 122 LPPPYVVKPNAEGSSVGVYIVHEDANGPPQLAA----DMPQNLMVETYVPGRELTVTVMG 177

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D  L VT+I      +Y Y+ KY    S H++PA +P +I +    +A  AH+A+GCRGI
Sbjct: 178 DRVLAVTDIL--SDGWYDYDAKYRPGGSRHIVPADLPAEITEACHDIALRAHRALGCRGI 235

Query: 244 SRSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           SRSD  +D       +  LE N QPGMTP S+ PE AA+ GYSF E   W+VEDASC R
Sbjct: 236 SRSDLRWDESRGLAGLILLETNTQPGMTPTSLSPEQAAHCGYSFPEFCAWLVEDASCSR 294


>gi|82542696|ref|YP_406643.1| D-alanine--D-alanine ligase [Shigella boydii Sb227]
 gi|187730657|ref|YP_001878902.1| D-alanine--D-alanine ligase [Shigella boydii CDC 3083-94]
 gi|81244107|gb|ABB64815.1| D-alanine-D-alanine ligase B [Shigella boydii Sb227]
 gi|187427649|gb|ACD06923.1| D-alanine--D-alanine ligase B [Shigella boydii CDC 3083-94]
 gi|320172817|gb|EFW48049.1| D-alanine--D-alanine ligase [Shigella dysenteriae CDC 74-1112]
 gi|320183621|gb|EFW58464.1| D-alanine--D-alanine ligase [Shigella flexneri CDC 796-83]
 gi|332098881|gb|EGJ03832.1| D-alanine--D-alanine ligase B [Shigella boydii 3594-74]
          Length = 306

 Score =  362 bits (930), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 106/305 (34%), Positives = 162/305 (53%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SG A  + L + G     +D        L  +     F  LHG
Sbjct: 5   IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119
             GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK +    G+PV P + + R   + 
Sbjct: 65  RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124

Query: 120 --------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P ++KP + GSS+G+  +  + ++   L    ++ H +++LIE++
Sbjct: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRL--AFQHDEEVLIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L    I  P   FY YE KY S  + +  PA +       +Q L 
Sbjct: 183 LSGPEFTVAILGEEILPSIRIQ-PSGTFYDYEAKYLSDETQYFCPAGLDASQEANLQALV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A   +GC+G  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 242 LKAWTTLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300

Query: 292 MVEDA 296
           ++E A
Sbjct: 301 ILELA 305


>gi|299131921|ref|ZP_07025116.1| D-alanine/D-alanine ligase [Afipia sp. 1NLS2]
 gi|298592058|gb|EFI52258.1| D-alanine/D-alanine ligase [Afipia sp. 1NLS2]
          Length = 308

 Score =  362 bits (930), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 156/303 (51%), Positives = 211/303 (69%), Gaps = 4/303 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSEREVSL SG ACA+ALE  G++V+++DV R +  VLA LKPD+AF  LHG
Sbjct: 7   VAVLMGGWSSEREVSLRSGAACAAALESRGYRVTRVDVQRDIATVLAALKPDVAFMALHG 66

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LE + IPYTHSG+LAS+L+M K  +K V+++ GVPV   + ++R  +  
Sbjct: 67  RPGEDGTIQGVLETIGIPYTHSGVLASSLAMQKDLAKTVMATAGVPVAAGLTLSRTDIAK 126

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            H + PPYVIKP+  GSS+G+ ++ ++ + P   L    W+HG++LL+E+YV G ELTC 
Sbjct: 127 AHPMEPPYVIKPVADGSSVGVFIVTEEHAHPPQELFRDDWSHGERLLVEKYVAGRELTCA 186

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V+   + +VTEI VP   FY YE KYS   S HVLPA I   +Y+EV+RL   AH ++GC
Sbjct: 187 VIKGEASEVTEI-VPLLKFYDYEAKYSKGASKHVLPAPILPFVYQEVRRLTLAAHVSLGC 245

Query: 241 RGISRSDFLFD---PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           RG+SR+DF +D     +  +  LE+N QPGMT  S+ PE+A YAG +F EL+ WMVEDAS
Sbjct: 246 RGVSRADFRYDDRIEGTGGLVCLEVNTQPGMTETSLVPELAGYAGVAFDELVQWMVEDAS 305

Query: 298 CLR 300
             R
Sbjct: 306 LDR 308


>gi|218698515|ref|YP_002406144.1| D-alanine--D-alanine ligase [Escherichia coli IAI39]
 gi|218368501|emb|CAR16236.1| D-alanine:D-alanine ligase [Escherichia coli IAI39]
          Length = 306

 Score =  362 bits (930), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 106/305 (34%), Positives = 162/305 (53%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SG A  + L + G     +D        L  +     F  LHG
Sbjct: 5   IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119
             GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK +    G+PV P + + R   + 
Sbjct: 65  RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVTLTRAEFEK 124

Query: 120 --------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P ++KP + GSS+G+  +  + ++   L    ++ H +++LIE++
Sbjct: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRL--AFQHDEEVLIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L    I  P   FY YE KY S  + +  PA +       +Q L 
Sbjct: 183 LSGPEFTVAILGEEILPSIRIQ-PSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A   +GC+G  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 242 LKAWTTLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300

Query: 292 MVEDA 296
           ++E A
Sbjct: 301 ILELA 305


>gi|218552675|ref|YP_002385588.1| D-alanine--D-alanine ligase [Escherichia coli IAI1]
 gi|218693561|ref|YP_002401228.1| D-alanine--D-alanine ligase [Escherichia coli 55989]
 gi|256020070|ref|ZP_05433935.1| D-alanine--D-alanine ligase [Shigella sp. D9]
 gi|332281220|ref|ZP_08393633.1| D-alanine:D-alanine ligase [Shigella sp. D9]
 gi|218350293|emb|CAU95976.1| D-alanine:D-alanine ligase [Escherichia coli 55989]
 gi|218359443|emb|CAQ96981.1| D-alanine:D-alanine ligase [Escherichia coli IAI1]
 gi|324118442|gb|EGC12336.1| D-alanine-D-alanine ligase [Escherichia coli E1167]
 gi|332103572|gb|EGJ06918.1| D-alanine:D-alanine ligase [Shigella sp. D9]
          Length = 306

 Score =  362 bits (929), Expect = 5e-98,   Method: Composition-based stats.
 Identities = 106/305 (34%), Positives = 162/305 (53%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SG A  + L + G     +D        L  +     F  LHG
Sbjct: 5   IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119
             GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK +    G+PV P + + R   + 
Sbjct: 65  RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124

Query: 120 --------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P ++KP + GSS+G+  +  + ++   L    ++ H +++LIE++
Sbjct: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRL--AFQHDEEVLIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L    I  P   FY YE KY S  + +  PA +       +Q L 
Sbjct: 183 LSGPEFTVAILGEEILPSIRIQ-PSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQELV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A   +GC+G  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 242 LKAWTTLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300

Query: 292 MVEDA 296
           ++E A
Sbjct: 301 ILELA 305


>gi|85703762|ref|ZP_01034866.1| D-alanine--D-alanine ligase [Roseovarius sp. 217]
 gi|85672690|gb|EAQ27547.1| D-alanine--D-alanine ligase [Roseovarius sp. 217]
          Length = 296

 Score =  362 bits (929), Expect = 5e-98,   Method: Composition-based stats.
 Identities = 139/301 (46%), Positives = 191/301 (63%), Gaps = 8/301 (2%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGN 61
           AV+MGG S+ER+VSLSSG+ CA AL +AGF+V ++D    +   L  +KPD+ FN LHG 
Sbjct: 2   AVIMGGPSAERDVSLSSGRECAVALREAGFEVVEVDAATDLCTRLQDIKPDVVFNALHGR 61

Query: 62  FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ 121
           +GEDG VQ +LE L +PYTHSG+L+SAL+MDK R+K    + G+PV  S+L  R  + + 
Sbjct: 62  WGEDGCVQGMLEWLGLPYTHSGVLSSALAMDKERTKVAYRAAGLPVVDSVLARRDEVRAG 121

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
           H++ PPYV+KP   GSS+G+ +++   + P  L      +  D +++E Y  G ELT  V
Sbjct: 122 HVMPPPYVVKPYNEGSSVGVYLVEAGANRPPALSD----DMPDVVMVESYAPGRELTTTV 177

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241
           +GD +L VT+I      +Y Y+ KY    S HV+PA +P +I+      A  AH+ +GCR
Sbjct: 178 IGDRALTVTDILT--EGWYDYDAKYKPGGSRHVVPADVPQEIFDACLDYALRAHEVLGCR 235

Query: 242 GISRSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
           G+SR+DF +D       +  LE N QPGMTP S+ PE A   G SF EL  WMVEDASC 
Sbjct: 236 GVSRTDFRWDEARGLDGLILLETNTQPGMTPTSLVPEQAQALGISFPELCRWMVEDASCN 295

Query: 300 R 300
           R
Sbjct: 296 R 296


>gi|309787232|ref|ZP_07681844.1| D-alanine--D-alanine ligase B [Shigella dysenteriae 1617]
 gi|308924810|gb|EFP70305.1| D-alanine--D-alanine ligase B [Shigella dysenteriae 1617]
          Length = 306

 Score =  361 bits (928), Expect = 5e-98,   Method: Composition-based stats.
 Identities = 106/305 (34%), Positives = 162/305 (53%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SG A  + L + G     +D        L  +     F  LHG
Sbjct: 5   IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119
             GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK +    G+PV P + + R   + 
Sbjct: 65  RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124

Query: 120 --------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P ++KP + GSS+G+  +  + ++   L    ++ H +++LIE++
Sbjct: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRL--AFQHDEEVLIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L    I  P   FY YE KY S  + +  PA +       +Q L 
Sbjct: 183 LSGQEFTVAILGEEILPSIRIQ-PSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A   +GC+G  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 242 LKAWTTLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300

Query: 292 MVEDA 296
           ++E A
Sbjct: 301 ILELA 305


>gi|237729390|ref|ZP_04559871.1| D-alanine-D-alanine ligase [Citrobacter sp. 30_2]
 gi|226909119|gb|EEH95037.1| D-alanine-D-alanine ligase [Citrobacter sp. 30_2]
          Length = 306

 Score =  361 bits (928), Expect = 6e-98,   Method: Composition-based stats.
 Identities = 105/305 (34%), Positives = 167/305 (54%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+ER+VSL+SG A  + L + G     ID       +L  +     F  LHG
Sbjct: 5   IAVLLGGTSAERDVSLNSGAAVLAGLREGGVDAHPIDPKEVDVTLLKSMGFQKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119
             GEDG +Q +LEL+ +PYT SG++ASA+SMDK+RSK +    G+PV P + + R   + 
Sbjct: 65  RGGEDGTLQGMLELIGLPYTGSGVMASAISMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124

Query: 120 --------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P ++KP + GSS+G+  ++++ ++   L    ++ H +++LIE++
Sbjct: 125 GLSDEVVTEISALGLPLIVKPSREGSSVGMSKVEEENALHGALAL--AFQHDEEVLIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L    I  P   FY YE KY S  + +  PA + ++    +Q L 
Sbjct: 183 LSGPEFTVAILGEEILPSIRIQ-PAGTFYDYEAKYLSDETQYFCPAGLEVEQEARLQELV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A   +GC+G  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 242 LKAWTTLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGLSFSQLVVR 300

Query: 292 MVEDA 296
           ++E A
Sbjct: 301 ILELA 305


>gi|260842328|ref|YP_003220106.1| D-alanine:D-alanine ligase [Escherichia coli O103:H2 str. 12009]
 gi|257757475|dbj|BAI28972.1| D-alanine:D-alanine ligase [Escherichia coli O103:H2 str. 12009]
          Length = 306

 Score =  361 bits (928), Expect = 6e-98,   Method: Composition-based stats.
 Identities = 107/305 (35%), Positives = 162/305 (53%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SG A  + L + G     +D        L  +     F  LHG
Sbjct: 5   IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119
             GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK +    G+PV P + + R   + 
Sbjct: 65  RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124

Query: 120 --------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P ++KP + GSS+G+  +  + ++   L    ++ H +++LIE++
Sbjct: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRL--AFQHDEEVLIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  V+G+  L    I  P   FY YE KY S  + +  PA +       +Q L 
Sbjct: 183 LSGPEFTVAVLGEEILPSIRIQ-PSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A   +GC+G  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 242 LKAWTTLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300

Query: 292 MVEDA 296
           ++E A
Sbjct: 301 ILELA 305


>gi|323964812|gb|EGB60279.1| D-alanine-D-alanine ligase [Escherichia coli M863]
 gi|327255070|gb|EGE66673.1| D-alanine--D-alanine ligase B [Escherichia coli STEC_7v]
          Length = 306

 Score =  361 bits (928), Expect = 6e-98,   Method: Composition-based stats.
 Identities = 106/305 (34%), Positives = 162/305 (53%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SG A  + L + G     +D        L  +     F  LHG
Sbjct: 5   IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119
             GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK +    G+PV P + + R   + 
Sbjct: 65  RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124

Query: 120 --------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P ++KP + GSS+G+  +  + ++   L    ++ H +++LIE++
Sbjct: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRL--AFQHDEEVLIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L    I  P   FY YE KY S  + +  PA +       +Q L 
Sbjct: 183 LSGPEFTVAILGEEILPSIRIQ-PAGTFYDYEAKYLSDETQYFCPAGLDASQEANLQALV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A   +GC+G  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 242 LKAWTTLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300

Query: 292 MVEDA 296
           ++E A
Sbjct: 301 ILELA 305


>gi|209884387|ref|YP_002288244.1| D-alanine--D-alanine ligase B [Oligotropha carboxidovorans OM5]
 gi|226696390|sp|B6JB38|DDL_OLICO RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|209872583|gb|ACI92379.1| D-alanine--D-alanine ligase B [Oligotropha carboxidovorans OM5]
          Length = 308

 Score =  361 bits (928), Expect = 6e-98,   Method: Composition-based stats.
 Identities = 155/303 (51%), Positives = 211/303 (69%), Gaps = 4/303 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSEREVSL SG ACA+ALE  G++V++IDV R +  VL +LKPD+A  +LHG
Sbjct: 7   VAVLMGGWSSEREVSLRSGAACAAALERKGYRVTRIDVQRDIATVLQNLKPDVALVMLHG 66

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LE L IPY+HSG+L+S+L+M K  +K V+++ GVPV   + + R  +  
Sbjct: 67  KPGEDGTIQGVLETLGIPYSHSGVLSSSLAMRKDLAKTVMATAGVPVAEGLTLTRAEIAK 126

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            H+++PPYVIKP+  GSS+G+ ++ +DQ+ P   L    W HG++LL+E+Y+ G ELTC 
Sbjct: 127 AHVMAPPYVIKPVADGSSVGVFIVTEDQAHPPQELFRDDWPHGEELLVEKYIAGRELTCA 186

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V+   + DV EI VP   FY YE KYS   S HVLPA +   +Y+EV+RL   AH A+GC
Sbjct: 187 VIKGEASDVIEI-VPLLKFYDYEAKYSKGASKHVLPAPVLPFVYQEVRRLTLAAHGALGC 245

Query: 241 RGISRSDFLFD---PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           RG+SR+DF +D     +  +  LE+N QPGMT  S+ PE+A YAG +F EL+ WMVEDAS
Sbjct: 246 RGVSRADFRYDDRIEGTGGLVCLEVNTQPGMTETSLVPELAGYAGVAFDELVQWMVEDAS 305

Query: 298 CLR 300
             R
Sbjct: 306 LDR 308


>gi|254476016|ref|ZP_05089402.1| D-alanine--D-alanine ligase [Ruegeria sp. R11]
 gi|214030259|gb|EEB71094.1| D-alanine--D-alanine ligase [Ruegeria sp. R11]
          Length = 296

 Score =  361 bits (927), Expect = 7e-98,   Method: Composition-based stats.
 Identities = 142/301 (47%), Positives = 198/301 (65%), Gaps = 8/301 (2%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGN 61
           AVLMGG S+EREVSLS+G+ CA+AL D G++V+++D    +   LA  +PD+ FN LHG 
Sbjct: 2   AVLMGGPSAEREVSLSTGRECAAALRDEGYQVTELDAGPDLAAQLAADRPDVVFNALHGR 61

Query: 62  FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ 121
           +GEDG VQ +LE L IPYTHSG+LASAL+MDK RSK+   + G+PV  S L  +  + + 
Sbjct: 62  WGEDGCVQGLLEWLAIPYTHSGVLASALAMDKQRSKEAFRAAGLPVVDSGLFAKSDVSAA 121

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
           H+++PPYV+KP   GSS+GI ++++  + P  L +    +  D++++E Y  G ELT  V
Sbjct: 122 HVMAPPYVVKPNNEGSSVGIYIVQEAANTPPQLSE----DMPDEVMVETYAPGRELTTTV 177

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241
           +   +L VT+I      +Y ++ KY    S HVLPA +P +I++     A  AH A+GCR
Sbjct: 178 VDGKALTVTDILT--DGWYDFDAKYKPGGSRHVLPADLPDEIFQLCLDYAVRAHDALGCR 235

Query: 242 GISRSDFLFDPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
           G+SR+DF +D    K  +  LE N QPGMTP S+ PE AA+ G SF +L  WMVEDASC 
Sbjct: 236 GVSRTDFRWDESRGKDGLILLETNTQPGMTPTSLAPEQAAHCGMSFGQLCAWMVEDASCG 295

Query: 300 R 300
           R
Sbjct: 296 R 296


>gi|328542969|ref|YP_004303078.1| D-alanine--D-alanine ligase B [polymorphum gilvum SL003B-26A1]
 gi|326412715|gb|ADZ69778.1| D-alanine--D-alanine ligase B [Polymorphum gilvum SL003B-26A1]
          Length = 308

 Score =  361 bits (927), Expect = 8e-98,   Method: Composition-based stats.
 Identities = 163/303 (53%), Positives = 221/303 (72%), Gaps = 3/303 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG  +ER VSLSSG+ACA ALE  G++V++IDVDR++  VLA  KPD+AFN LHG
Sbjct: 6   VAVLMGGWVNERPVSLSSGRACADALEARGYRVTRIDVDRTIAAVLAEAKPDVAFNALHG 65

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG +Q ILE+L+IPYTHSG++ASAL+M+K+++K V+++ GVPV    +V+R ++ S
Sbjct: 66  PFGEDGCIQGILEILQIPYTHSGVMASALAMNKVKAKAVMAAAGVPVTEHRIVDRRSIGS 125

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +H ++PPYV+KP+  GSS G++++K+D   P   L    W + D L+ E+Y+ G ELTC 
Sbjct: 126 EHPMAPPYVLKPINEGSSFGVLIVKEDAQFPPQELSRDDWPYPDVLMCERYIPGRELTCA 185

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           VMGD +L V +I      FY YE KY+   S H+LPAKI   IY+EVQ+L   AHQA+GC
Sbjct: 186 VMGDRALGVIDIVPLGHGFYDYEAKYAEGGSQHILPAKISPIIYQEVQKLTLTAHQALGC 245

Query: 241 RGISRSDFLFDPLSRK---VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           RG+SR+DF FD  +     +  LE+N QPGMTP S+ PE+AA+ GY F +L+ WMVEDAS
Sbjct: 246 RGVSRADFRFDEKADGTSSLICLEVNTQPGMTPTSLVPELAAHEGYDFGDLVTWMVEDAS 305

Query: 298 CLR 300
           C R
Sbjct: 306 CCR 308


>gi|281177312|dbj|BAI53642.1| D-alanine-D-alanine ligase B [Escherichia coli SE15]
          Length = 306

 Score =  361 bits (927), Expect = 8e-98,   Method: Composition-based stats.
 Identities = 107/305 (35%), Positives = 163/305 (53%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SG A  + L + G     +D        L  +     F  LHG
Sbjct: 5   IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119
             GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK +  S G+PV P + + R   + 
Sbjct: 65  RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQSAGLPVAPWVALTRAEFEK 124

Query: 120 --------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P ++KP + GSS+G+  +  + ++   L    ++ H +++LIE++
Sbjct: 125 GLNDKQLAEISSLGLPVIVKPSREGSSVGMSKVVAENALQDALRL--AFQHDEEVLIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L    I  P   FY YE KY S  + +  PA +       +Q L 
Sbjct: 183 LSGPEFTVAILGEEILPSIRIQ-PAGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A   +GC+G  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 242 LKAWTTLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300

Query: 292 MVEDA 296
           ++E A
Sbjct: 301 ILELA 305


>gi|310814886|ref|YP_003962850.1| D-alanine--D-alanine ligase [Ketogulonicigenium vulgare Y25]
 gi|308753621|gb|ADO41550.1| D-alanine--D-alanine ligase [Ketogulonicigenium vulgare Y25]
          Length = 292

 Score =  361 bits (927), Expect = 9e-98,   Method: Composition-based stats.
 Identities = 148/298 (49%), Positives = 193/298 (64%), Gaps = 8/298 (2%)

Query: 5   MGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGE 64
           MGG S+EREVSLSSG+ CA AL +AG+ V ++D D ++   LAH+KPD+ FN LHG +GE
Sbjct: 1   MGGFSAEREVSLSSGRECAKALVEAGYDVVEVDADATLVDRLAHVKPDVVFNALHGRWGE 60

Query: 65  DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI 124
           DG VQ ILE L IPYTHSG+LASAL+MDK R+K    + G+PV PS+L  R  +  +H++
Sbjct: 61  DGCVQGILEWLRIPYTHSGVLASALAMDKQRTKSTYQAAGLPVVPSLLAARDEVSQRHMM 120

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
             PYV+KP   GSS+G+ ++    + P  L    S    D +++E Y  G ELT  V+GD
Sbjct: 121 DAPYVVKPANEGSSVGVYIVHAGANRPPQL----SPEMPDVVMVEAYAAGRELTTAVLGD 176

Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244
            +L VT+I      +Y Y  KYS   S H +PA IP+ IY      A  AH+A+GCRG+S
Sbjct: 177 RALTVTDIIT--DGWYDYNAKYSVGGSRHEIPANIPVQIYDACMDYALRAHRALGCRGLS 234

Query: 245 RSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           R+DF +D       +  LE N QPGMTP S+ PE AA+AG SF EL  W+VEDASC R
Sbjct: 235 RTDFRWDETRGLDGLILLETNTQPGMTPTSLAPEQAAWAGISFPELCRWLVEDASCGR 292


>gi|146310302|ref|YP_001175376.1| D-alanine--D-alanine ligase [Enterobacter sp. 638]
 gi|145317178|gb|ABP59325.1| D-alanine--D-alanine ligase [Enterobacter sp. 638]
          Length = 306

 Score =  361 bits (927), Expect = 9e-98,   Method: Composition-based stats.
 Identities = 107/305 (35%), Positives = 168/305 (55%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG S+ER+VSL+SG A  +AL + G     +D        L  +  D  F  LHG
Sbjct: 5   IAVLMGGTSAERDVSLNSGAAVLAALREGGVNAHPVDPKDIDVTRLKEMGFDKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +L+L+ +PYT SG++ASA+SMDK+RSK +    G+PV P + V R   +S
Sbjct: 65  RGGEDGTLQGLLDLIGMPYTGSGVMASAISMDKLRSKLLWQGAGLPVAPWVAVTRREFES 124

Query: 121 ---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       ++ P ++KP + GSS+G+  + K   +   L    ++ H +++LIE++
Sbjct: 125 GLEVGVNQRIEQLALPVIVKPSREGSSVGMSKVDKADDLTSALAL--AFQHDEEVLIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L    I  P   FY YE KY S  + +  P+ +  +  +E++ L 
Sbjct: 183 LGGPEFTVAMLGEEILPSIRIQ-PAGTFYDYEAKYLSDETQYFCPSGLEAEREEELKALV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A   +GCRG  R D + D    + + LE N  PGMT  S+ P  A  AG +F +L++ 
Sbjct: 242 LKAWTVLGCRGWGRIDVMQD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMTFSQLVVR 300

Query: 292 MVEDA 296
           +++ A
Sbjct: 301 ILDQA 305


>gi|16128085|ref|NP_414634.1| D-alanine:D-alanine ligase [Escherichia coli str. K-12 substr.
           MG1655]
 gi|74310711|ref|YP_309130.1| D-alanine--D-alanine ligase [Shigella sonnei Ss046]
 gi|89106975|ref|AP_000755.1| D-Alanine:D-alanine ligase [Escherichia coli str. K-12 substr.
           W3110]
 gi|157159563|ref|YP_001456881.1| D-alanine--D-alanine ligase [Escherichia coli HS]
 gi|170021552|ref|YP_001726506.1| D-alanine--D-alanine ligase [Escherichia coli ATCC 8739]
 gi|170079731|ref|YP_001729051.1| D-alanine:D-alanine ligase [Escherichia coli str. K-12 substr.
           DH10B]
 gi|188494627|ref|ZP_03001897.1| D-alanine--D-alanine ligase [Escherichia coli 53638]
 gi|193065887|ref|ZP_03046948.1| D-alanine--D-alanine ligase B [Escherichia coli E22]
 gi|194429381|ref|ZP_03061906.1| D-alanine--D-alanine ligase B [Escherichia coli B171]
 gi|209917285|ref|YP_002291369.1| D-alanine--D-alanine ligase [Escherichia coli SE11]
 gi|218703352|ref|YP_002410871.1| D-alanine--D-alanine ligase [Escherichia coli UMN026]
 gi|238899493|ref|YP_002925289.1| D-alanine:D-alanine ligase [Escherichia coli BW2952]
 gi|256025406|ref|ZP_05439271.1| D-alanine--D-alanine ligase [Escherichia sp. 4_1_40B]
 gi|260866245|ref|YP_003232647.1| D-alanine:D-alanine ligase [Escherichia coli O111:H- str. 11128]
 gi|293403164|ref|ZP_06647261.1| ddl [Escherichia coli FVEC1412]
 gi|293408183|ref|ZP_06652023.1| conserved hypothetical protein [Escherichia coli B354]
 gi|293417968|ref|ZP_06660590.1| D-alanine-D-alanine ligase [Escherichia coli B185]
 gi|300816130|ref|ZP_07096353.1| D-ala D-ala ligase [Escherichia coli MS 107-1]
 gi|300821903|ref|ZP_07102047.1| D-ala D-ala ligase [Escherichia coli MS 119-7]
 gi|300900877|ref|ZP_07119014.1| D-ala D-ala ligase [Escherichia coli MS 198-1]
 gi|300905501|ref|ZP_07123265.1| D-ala D-ala ligase [Escherichia coli MS 84-1]
 gi|300919647|ref|ZP_07136138.1| D-ala D-ala ligase [Escherichia coli MS 115-1]
 gi|300923126|ref|ZP_07139186.1| D-ala D-ala ligase [Escherichia coli MS 182-1]
 gi|300949890|ref|ZP_07163853.1| D-ala D-ala ligase [Escherichia coli MS 116-1]
 gi|300955958|ref|ZP_07168291.1| D-ala D-ala ligase [Escherichia coli MS 175-1]
 gi|301026100|ref|ZP_07189575.1| D-ala D-ala ligase [Escherichia coli MS 69-1]
 gi|301028575|ref|ZP_07191805.1| D-ala D-ala ligase [Escherichia coli MS 196-1]
 gi|301303807|ref|ZP_07209927.1| D-ala D-ala ligase [Escherichia coli MS 124-1]
 gi|301330127|ref|ZP_07222796.1| D-ala D-ala ligase [Escherichia coli MS 78-1]
 gi|301646404|ref|ZP_07246286.1| D-ala D-ala ligase [Escherichia coli MS 146-1]
 gi|307136693|ref|ZP_07496049.1| D-alanine--D-alanine ligase [Escherichia coli H736]
 gi|307311457|ref|ZP_07591099.1| D-alanine/D-alanine ligase [Escherichia coli W]
 gi|312970186|ref|ZP_07784368.1| D-alanine--D-alanine ligase B [Escherichia coli 1827-70]
 gi|331640545|ref|ZP_08341693.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB)
           (D-Ala-D-Ala ligase B) [Escherichia coli H736]
 gi|331661466|ref|ZP_08362390.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB)
           (D-Ala-D-Ala ligase B) [Escherichia coli TA143]
 gi|331666329|ref|ZP_08367210.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB)
           (D-Ala-D-Ala ligase B) [Escherichia coli TA271]
 gi|331680666|ref|ZP_08381325.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB)
           (D-Ala-D-Ala ligase B) [Escherichia coli H591]
 gi|331681477|ref|ZP_08382114.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB)
           (D-Ala-D-Ala ligase B) [Escherichia coli H299]
 gi|118407|sp|P07862|DDLB_ECOLI RecName: Full=D-alanine--D-alanine ligase B; AltName:
           Full=D-Ala-D-Ala ligase B; AltName: Full=D-alanylalanine
           synthetase B
 gi|157831485|pdb|1IOV|A Chain A, Complex Of D-Ala:d-Ala Ligase With Adp And A Phosphoryl
           Phosphonate
 gi|157834791|pdb|2DLN|A Chain A, Vancomycin Resistance: Structure Of D-Alanine:d-Alanine
           Ligase At 2.3 Angstroms Resolution
 gi|40860|emb|CAA38869.1| D-Ala:D-Ala ligase (Ddl) [Escherichia coli]
 gi|145724|gb|AAA23672.1| ddl cell wall enzyme [Escherichia coli]
 gi|146030|gb|AAA23815.1| D-alanine:D-alanine ligase [Escherichia coli]
 gi|1786280|gb|AAC73203.1| D-alanine:D-alanine ligase [Escherichia coli str. K-12 substr.
           MG1655]
 gi|21321973|dbj|BAB96660.1| D-Alanine:D-alanine ligase [Escherichia coli str. K12 substr.
           W3110]
 gi|73854188|gb|AAZ86895.1| D-alanine-D-alanine ligase B [Shigella sonnei Ss046]
 gi|157065243|gb|ABV04498.1| D-alanine--D-alanine ligase B [Escherichia coli HS]
 gi|169756480|gb|ACA79179.1| D-alanine--D-alanine ligase [Escherichia coli ATCC 8739]
 gi|169887566|gb|ACB01273.1| D-alanine:D-alanine ligase [Escherichia coli str. K-12 substr.
           DH10B]
 gi|188489826|gb|EDU64929.1| D-alanine--D-alanine ligase [Escherichia coli 53638]
 gi|192926474|gb|EDV81107.1| D-alanine--D-alanine ligase B [Escherichia coli E22]
 gi|194412601|gb|EDX28898.1| D-alanine--D-alanine ligase B [Escherichia coli B171]
 gi|209910544|dbj|BAG75618.1| D-alanine-D-alanine ligase B [Escherichia coli SE11]
 gi|218430449|emb|CAR11315.1| D-alanine:D-alanine ligase [Escherichia coli UMN026]
 gi|238860726|gb|ACR62724.1| D-alanine:D-alanine ligase [Escherichia coli BW2952]
 gi|257762601|dbj|BAI34096.1| D-alanine:D-alanine ligase [Escherichia coli O111:H- str. 11128]
 gi|260450701|gb|ACX41123.1| D-alanine/D-alanine ligase [Escherichia coli DH1]
 gi|284919872|emb|CBG32927.1| D-alanine--D-alanine ligase B [Escherichia coli 042]
 gi|291430079|gb|EFF03093.1| ddl [Escherichia coli FVEC1412]
 gi|291430686|gb|EFF03684.1| D-alanine-D-alanine ligase [Escherichia coli B185]
 gi|291472434|gb|EFF14916.1| conserved hypothetical protein [Escherichia coli B354]
 gi|299878386|gb|EFI86597.1| D-ala D-ala ligase [Escherichia coli MS 196-1]
 gi|300317178|gb|EFJ66962.1| D-ala D-ala ligase [Escherichia coli MS 175-1]
 gi|300355641|gb|EFJ71511.1| D-ala D-ala ligase [Escherichia coli MS 198-1]
 gi|300395671|gb|EFJ79209.1| D-ala D-ala ligase [Escherichia coli MS 69-1]
 gi|300402651|gb|EFJ86189.1| D-ala D-ala ligase [Escherichia coli MS 84-1]
 gi|300413287|gb|EFJ96597.1| D-ala D-ala ligase [Escherichia coli MS 115-1]
 gi|300420581|gb|EFK03892.1| D-ala D-ala ligase [Escherichia coli MS 182-1]
 gi|300450722|gb|EFK14342.1| D-ala D-ala ligase [Escherichia coli MS 116-1]
 gi|300525503|gb|EFK46572.1| D-ala D-ala ligase [Escherichia coli MS 119-7]
 gi|300531337|gb|EFK52399.1| D-ala D-ala ligase [Escherichia coli MS 107-1]
 gi|300840934|gb|EFK68694.1| D-ala D-ala ligase [Escherichia coli MS 124-1]
 gi|300843874|gb|EFK71634.1| D-ala D-ala ligase [Escherichia coli MS 78-1]
 gi|301075374|gb|EFK90180.1| D-ala D-ala ligase [Escherichia coli MS 146-1]
 gi|306908436|gb|EFN38934.1| D-alanine/D-alanine ligase [Escherichia coli W]
 gi|309700303|emb|CBI99591.1| D-alanine--D-alanine ligase B [Escherichia coli ETEC H10407]
 gi|310337684|gb|EFQ02795.1| D-alanine--D-alanine ligase B [Escherichia coli 1827-70]
 gi|315059315|gb|ADT73642.1| D-alanine:D-alanine ligase [Escherichia coli W]
 gi|315134786|dbj|BAJ41945.1| ddl [Escherichia coli DH1]
 gi|315616129|gb|EFU96748.1| D-alanine--D-alanine ligase B [Escherichia coli 3431]
 gi|320200389|gb|EFW74975.1| D-alanylalanine synthetase [Escherichia coli EC4100B]
 gi|323160110|gb|EFZ46071.1| D-alanine--D-alanine ligase B [Escherichia coli E128010]
 gi|323165975|gb|EFZ51755.1| D-alanine--D-alanine ligase B [Shigella sonnei 53G]
 gi|323171255|gb|EFZ56903.1| D-alanine--D-alanine ligase B [Escherichia coli LT-68]
 gi|323176400|gb|EFZ61992.1| D-alanine--D-alanine ligase B [Escherichia coli 1180]
 gi|323181789|gb|EFZ67202.1| D-alanine--D-alanine ligase B [Escherichia coli 1357]
 gi|323380127|gb|ADX52395.1| D-alanine/D-alanine ligase [Escherichia coli KO11]
 gi|323939868|gb|EGB36068.1| D-alanine-D-alanine ligase [Escherichia coli E482]
 gi|324017747|gb|EGB86966.1| D-ala D-ala ligase [Escherichia coli MS 117-3]
 gi|331040291|gb|EGI12498.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB)
           (D-Ala-D-Ala ligase B) [Escherichia coli H736]
 gi|331061381|gb|EGI33344.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB)
           (D-Ala-D-Ala ligase B) [Escherichia coli TA143]
 gi|331066540|gb|EGI38417.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB)
           (D-Ala-D-Ala ligase B) [Escherichia coli TA271]
 gi|331072129|gb|EGI43465.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB)
           (D-Ala-D-Ala ligase B) [Escherichia coli H591]
 gi|331081698|gb|EGI52859.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB)
           (D-Ala-D-Ala ligase B) [Escherichia coli H299]
 gi|332341424|gb|AEE54758.1| D-alanine--D-alanine ligase DdlB [Escherichia coli UMNK88]
          Length = 306

 Score =  361 bits (927), Expect = 9e-98,   Method: Composition-based stats.
 Identities = 106/305 (34%), Positives = 162/305 (53%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SG A  + L + G     +D        L  +     F  LHG
Sbjct: 5   IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119
             GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK +    G+PV P + + R   + 
Sbjct: 65  RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124

Query: 120 --------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P ++KP + GSS+G+  +  + ++   L    ++ H +++LIE++
Sbjct: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRL--AFQHDEEVLIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L    I  P   FY YE KY S  + +  PA +       +Q L 
Sbjct: 183 LSGPEFTVAILGEEILPSIRIQ-PSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A   +GC+G  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 242 LKAWTTLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300

Query: 292 MVEDA 296
           ++E A
Sbjct: 301 ILELA 305


>gi|82775499|ref|YP_401846.1| D-alanine--D-alanine ligase [Shigella dysenteriae Sd197]
 gi|81239647|gb|ABB60357.1| D-alanine-D-alanine ligase B [Shigella dysenteriae Sd197]
          Length = 306

 Score =  360 bits (926), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 106/305 (34%), Positives = 162/305 (53%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SG A  + L + G     +D        L  +     F  LHG
Sbjct: 5   IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119
             GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK +    G+PV P + + R   + 
Sbjct: 65  RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVVPWVALTRAEFEK 124

Query: 120 --------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P ++KP + GSS+G+  +  + ++   L    ++ H +++LIE++
Sbjct: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRL--AFQHDEEVLIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L    I  P   FY YE KY S  + +  PA +       +Q L 
Sbjct: 183 LSGQEFTVAILGEEILPSIRIQ-PSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A   +GC+G  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 242 LKAWTTLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300

Query: 292 MVEDA 296
           ++E A
Sbjct: 301 ILELA 305


>gi|77919793|ref|YP_357608.1| D-alanine--D-alanine ligase [Pelobacter carbinolicus DSM 2380]
 gi|123573744|sp|Q3A2G9|DDL_PELCD RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|77545876|gb|ABA89438.1| D-alanine--D-alanine ligase [Pelobacter carbinolicus DSM 2380]
          Length = 305

 Score =  360 bits (926), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 117/300 (39%), Positives = 179/300 (59%), Gaps = 5/300 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG+S+EREVSL +GKA + AL   G++V+ ID  R +   L     ++AF  LHG
Sbjct: 11  IAVLMGGLSAEREVSLRTGKAISQALTRCGYEVTDIDAGRDLAQQLEKTGVEVAFIALHG 70

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG VQ +LEL +IPYT SG+LAS+L+MDK+ +K+++   G+      ++ R     
Sbjct: 71  RFGEDGTVQGLLELADIPYTGSGVLASSLAMDKVATKKMLCYHGIATPGFAVMRRGQKIC 130

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
             L   P V+KP + GS++GI ++  +Q +   L    ++ H D +L+EQ++ G E+T G
Sbjct: 131 GTLPDYPLVVKPAREGSTIGISIVHDEQELAAGL--EEAFRHDDLVLVEQFIAGAEVTVG 188

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V+    L + ++ VPK  FY Y+ KY+   + ++LPA +P  +Y  +Q  A    +AIGC
Sbjct: 189 VLDGQPLPIIQV-VPKGGFYDYQSKYTPGQTEYLLPAPLPETLYGALQDSAVRVFEAIGC 247

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
            G +R DF+        + LE+N  PGMT  S+ P+ A   G SF EL+  ++  AS  +
Sbjct: 248 CGAARVDFMVTDTG--FYCLEVNTIPGMTETSLLPKAANAVGMSFDELVERILAGASLRK 305


>gi|254509513|ref|ZP_05121580.1| D-alanine--D-alanine ligase [Rhodobacteraceae bacterium KLH11]
 gi|221533224|gb|EEE36212.1| D-alanine--D-alanine ligase [Rhodobacteraceae bacterium KLH11]
          Length = 297

 Score =  360 bits (926), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 147/301 (48%), Positives = 200/301 (66%), Gaps = 7/301 (2%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGN 61
           AVLMGG S+EREVSLSSG+ CA+AL   GF+V ++D    +   L  +KPD+ FN LHG 
Sbjct: 2   AVLMGGPSAEREVSLSSGRECAAALVGEGFEVVELDAGPDLYARLLDIKPDVVFNALHGR 61

Query: 62  FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ 121
           +GEDG VQ +LE + IPYTHSG+L+SAL+MDK RSK++  + G+P+ PS++V +  +   
Sbjct: 62  WGEDGCVQGLLEWMRIPYTHSGVLSSALAMDKQRSKEIYQTEGLPIVPSVIVPKVEVVVA 121

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
           H++ PPYV KP   GSS+GI ++ ++ + P  L  +      D +++E+YV G ELT  V
Sbjct: 122 HVMEPPYVAKPNNEGSSVGIYIVHENANGPPQLDAA----MPDHVMVEKYVAGRELTVTV 177

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241
           MGD +L VTEI +    +Y Y+ KY    S HVLPA IP DI+      A  AH A+GCR
Sbjct: 178 MGDRALTVTEI-MTDGGWYDYDAKYKPGGSWHVLPADIPQDIFDRCMDYALKAHDALGCR 236

Query: 242 GISRSDFLFDPL--SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
           G++R+D+ +D    +  +F LE N QPGMTP S+ PE AA+ G SF +L  WMVEDASC 
Sbjct: 237 GVTRTDYRWDDSMGADGLFLLETNTQPGMTPTSLVPEQAAHIGMSFGQLCAWMVEDASCD 296

Query: 300 R 300
           R
Sbjct: 297 R 297


>gi|291280917|ref|YP_003497735.1| D-alanine--D-alanine ligase B [Escherichia coli O55:H7 str. CB9615]
 gi|209746530|gb|ACI71572.1| D-alanine-D-alanine ligase B [Escherichia coli]
 gi|290760790|gb|ADD54751.1| D-alanine--D-alanine ligase B [Escherichia coli O55:H7 str. CB9615]
 gi|320658217|gb|EFX25946.1| D-alanine--D-alanine ligase [Escherichia coli O55:H7 str. 3256-97
           TW 07815]
 gi|320663526|gb|EFX30810.1| D-alanine--D-alanine ligase [Escherichia coli O55:H7 str. USDA
           5905]
          Length = 306

 Score =  360 bits (926), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 106/305 (34%), Positives = 162/305 (53%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SG A  + L + G     +D        L  +     F  LHG
Sbjct: 5   IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119
             GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK +    G+PV P + + R   + 
Sbjct: 65  RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRVEFEK 124

Query: 120 --------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P ++KP + GSS+G+  +  + ++   L    ++ H +++LIE++
Sbjct: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRL--AFQHDEEVLIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L    I  P   FY YE KY S  + +  PA +       +Q L 
Sbjct: 183 LSGPEFTVAILGEEILPSIRIQ-PSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A   +GC+G  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 242 LKAWTTLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300

Query: 292 MVEDA 296
           ++E A
Sbjct: 301 ILELA 305


>gi|218687969|ref|YP_002396181.1| D-alanine--D-alanine ligase [Escherichia coli ED1a]
 gi|306815310|ref|ZP_07449459.1| D-alanine--D-alanine ligase [Escherichia coli NC101]
 gi|218425533|emb|CAR06316.1| D-alanine:D-alanine ligase [Escherichia coli ED1a]
 gi|222031923|emb|CAP74661.1| D-alanine--D-alanine ligase B [Escherichia coli LF82]
 gi|305850972|gb|EFM51427.1| D-alanine--D-alanine ligase [Escherichia coli NC101]
 gi|312944698|gb|ADR25525.1| D-alanine--D-alanine ligase [Escherichia coli O83:H1 str. NRG 857C]
 gi|315300007|gb|EFU59245.1| D-ala D-ala ligase [Escherichia coli MS 16-3]
 gi|324008327|gb|EGB77546.1| D-ala D-ala ligase [Escherichia coli MS 57-2]
          Length = 306

 Score =  360 bits (926), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 106/305 (34%), Positives = 162/305 (53%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SG A  + L + G     +D        L  +     F  LHG
Sbjct: 5   IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119
             GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK +    G+PV P + + R   + 
Sbjct: 65  RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124

Query: 120 --------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P ++KP + GSS+G+  +  + ++   L    ++ H +++LIE++
Sbjct: 125 GLNDKQLAEISSLGLPVIVKPSREGSSVGMSKVVAENALQDALRL--AFQHDEEVLIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L    I  P   FY YE KY S  + +  PA +       +Q L 
Sbjct: 183 LSGPEFTVAILGEEILPSIRIQ-PAGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A   +GC+G  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 242 LKAWTTLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300

Query: 292 MVEDA 296
           ++E A
Sbjct: 301 ILELA 305


>gi|215485258|ref|YP_002327689.1| D-alanine--D-alanine ligase [Escherichia coli O127:H6 str.
           E2348/69]
 gi|312966220|ref|ZP_07780446.1| D-alanine--D-alanine ligase B [Escherichia coli 2362-75]
 gi|215263330|emb|CAS07645.1| D-alanine: D-alanine ligase [Escherichia coli O127:H6 str.
           E2348/69]
 gi|312289463|gb|EFR17357.1| D-alanine--D-alanine ligase B [Escherichia coli 2362-75]
 gi|320197457|gb|EFW72071.1| D-alanine--D-alanine ligase B [Escherichia coli WV_060327]
          Length = 306

 Score =  360 bits (926), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 106/305 (34%), Positives = 162/305 (53%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SG A  + L + G     +D        L  +     F  LHG
Sbjct: 5   IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119
             GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK +    G+PV P + + R   + 
Sbjct: 65  RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124

Query: 120 --------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P ++KP + GSS+G+  +  + ++   L    ++ H +++LIE++
Sbjct: 125 GLNDKQLAEISSLGLPVIVKPSREGSSVGMSKVVAENTLQDALRL--AFQHDEEVLIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L    I  P   FY YE KY S  + +  PA +       +Q L 
Sbjct: 183 LSGPEFTVAILGEEILPSIRIQ-PSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A   +GC+G  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 242 LKAWTTLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300

Query: 292 MVEDA 296
           ++E A
Sbjct: 301 ILELA 305


>gi|194439412|ref|ZP_03071489.1| D-alanine--D-alanine ligase B [Escherichia coli 101-1]
 gi|194421671|gb|EDX37681.1| D-alanine--D-alanine ligase B [Escherichia coli 101-1]
 gi|323970764|gb|EGB66018.1| D-alanine-D-alanine ligase [Escherichia coli TA007]
          Length = 306

 Score =  360 bits (925), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 105/305 (34%), Positives = 162/305 (53%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SG A  + L + G     +D        L  +     F  LHG
Sbjct: 5   IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119
             GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK +    G+PV P +++ R   + 
Sbjct: 65  RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVVLTRAEFEK 124

Query: 120 --------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P ++KP + GSS+G+  +  + ++   L    ++ H +++LIE++
Sbjct: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRL--AFQHDEEVLIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++ +  L    I  P   FY YE KY S  + +  PA +       +Q L 
Sbjct: 183 LSGPEFTVAILDEEILPSIRIQ-PSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A   +GC+G  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 242 LKAWTTLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300

Query: 292 MVEDA 296
           ++E A
Sbjct: 301 ILELA 305


>gi|191167773|ref|ZP_03029580.1| D-alanine--D-alanine ligase B [Escherichia coli B7A]
 gi|193070839|ref|ZP_03051772.1| D-alanine--D-alanine ligase B [Escherichia coli E110019]
 gi|293476752|ref|ZP_06665160.1| D-alanine-D-alanine ligase B [Escherichia coli B088]
 gi|309796082|ref|ZP_07690494.1| D-ala D-ala ligase [Escherichia coli MS 145-7]
 gi|331650989|ref|ZP_08352017.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB)
           (D-Ala-D-Ala ligase B) [Escherichia coli M718]
 gi|190902199|gb|EDV61941.1| D-alanine--D-alanine ligase B [Escherichia coli B7A]
 gi|192955869|gb|EDV86339.1| D-alanine--D-alanine ligase B [Escherichia coli E110019]
 gi|254967073|gb|ACT97575.1| D-alanine-D-alanine ligase B [mixed culture bacterium
           CY_gF1DD01_05]
 gi|254967084|gb|ACT97583.1| D-alanine-D-alanine ligase B [mixed culture bacterium
           CY_gF1DD01_10]
 gi|291321205|gb|EFE60647.1| D-alanine-D-alanine ligase B [Escherichia coli B088]
 gi|308120324|gb|EFO57586.1| D-ala D-ala ligase [Escherichia coli MS 145-7]
 gi|323945721|gb|EGB41769.1| D-alanine-D-alanine ligase [Escherichia coli H120]
 gi|323975744|gb|EGB70840.1| D-alanine-D-alanine ligase [Escherichia coli TW10509]
 gi|331051443|gb|EGI23492.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB)
           (D-Ala-D-Ala ligase B) [Escherichia coli M718]
          Length = 306

 Score =  360 bits (925), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 106/305 (34%), Positives = 162/305 (53%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SG A  + L + G     +D        L  +     F  LHG
Sbjct: 5   IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119
             GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK +    G+PV P + + R   + 
Sbjct: 65  RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124

Query: 120 --------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P ++KP + GSS+G+  +  + ++   L    ++ H +++LIE++
Sbjct: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRL--AFQHDEEVLIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L    I  P   FY YE KY S  + +  PA +       +Q L 
Sbjct: 183 LSGPEFTVAILGEEILPSIRIQ-PAGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A   +GC+G  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 242 LKAWTTLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300

Query: 292 MVEDA 296
           ++E A
Sbjct: 301 ILELA 305


>gi|283835154|ref|ZP_06354895.1| D-alanine--D-alanine ligase B [Citrobacter youngae ATCC 29220]
 gi|291069454|gb|EFE07563.1| D-alanine--D-alanine ligase B [Citrobacter youngae ATCC 29220]
          Length = 306

 Score =  360 bits (925), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 105/305 (34%), Positives = 165/305 (54%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL+SG A  + L + G     +D       +L  +     F  LHG
Sbjct: 5   IAVLSGGTSAEREVSLNSGAAVLAGLREGGVDAHLVDPKEVDVTLLKSMGFQKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119
             GEDG +Q +LE + +PYT SG++ASA+SMDK+RSK +    G+PV P + + R   + 
Sbjct: 65  RGGEDGTLQGMLEQIGLPYTGSGVMASAISMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124

Query: 120 --------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P ++KP + GSS+G+  +++  ++   L    ++ H +++LIE++
Sbjct: 125 GLSDELVTKISALGLPLIVKPSREGSSVGMSKVEEQNALQGALAL--AFQHDEEVLIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L    I  P   FY YE KY S  + +  PA +  +   ++Q L 
Sbjct: 183 LSGPEFTVALLGEEILPSIRIQ-PAGTFYDYEAKYLSDETQYFCPAGLEAEQEAQLQELV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A  A+GC+G  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 242 LKAWTALGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGLSFSQLVVR 300

Query: 292 MVEDA 296
           ++E A
Sbjct: 301 ILELA 305


>gi|24111537|ref|NP_706047.1| D-alanine--D-alanine ligase [Shigella flexneri 2a str. 301]
 gi|110804156|ref|YP_687676.1| D-alanine--D-alanine ligase [Shigella flexneri 5 str. 8401]
 gi|39931097|sp|Q83MF7|DDLB_SHIFL RecName: Full=D-alanine--D-alanine ligase B; AltName:
           Full=D-Ala-D-Ala ligase B; AltName: Full=D-alanylalanine
           synthetase B
 gi|24050296|gb|AAN41754.1| D-alanine-D-alanine ligase B [Shigella flexneri 2a str. 301]
 gi|110613704|gb|ABF02371.1| D-alanine-D-alanine ligase B [Shigella flexneri 5 str. 8401]
 gi|281599454|gb|ADA72438.1| D-alanine--D-alanine ligase B [Shigella flexneri 2002017]
 gi|313646525|gb|EFS10986.1| D-alanine--D-alanine ligase B [Shigella flexneri 2a str. 2457T]
 gi|332762094|gb|EGJ92363.1| D-alanine--D-alanine ligase B [Shigella flexneri 4343-70]
 gi|332762306|gb|EGJ92573.1| D-alanine--D-alanine ligase B [Shigella flexneri 2747-71]
 gi|332764938|gb|EGJ95166.1| D-alanine--D-alanine ligase B [Shigella flexneri K-671]
 gi|332768882|gb|EGJ99061.1| D-alanine--D-alanine ligase [Shigella flexneri 2930-71]
 gi|333009448|gb|EGK28904.1| D-alanine--D-alanine ligase B [Shigella flexneri K-218]
 gi|333011480|gb|EGK30894.1| D-alanine--D-alanine ligase B [Shigella flexneri K-272]
 gi|333021723|gb|EGK40972.1| D-alanine--D-alanine ligase B [Shigella flexneri K-227]
 gi|333022352|gb|EGK41590.1| D-alanine--D-alanine ligase B [Shigella flexneri K-304]
          Length = 306

 Score =  360 bits (924), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 105/305 (34%), Positives = 162/305 (53%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SG A  + L + G     +D        L  +     F  LHG
Sbjct: 5   IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119
             GEDG +Q +LEL+ +PYT SG++ASALS+DK+RSK +    G+PV P + + R   + 
Sbjct: 65  RGGEDGTLQGMLELMGLPYTGSGVMASALSIDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124

Query: 120 --------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P ++KP + GSS+G+  +  + ++   L    ++ H +++LIE++
Sbjct: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRL--AFQHDEEVLIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L    I  P   FY YE KY S  + +  PA +       +Q L 
Sbjct: 183 LSGPEFTVAILGEEILPSIRIQ-PSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A   +GC+G  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 242 LKAWTTLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300

Query: 292 MVEDA 296
           ++E A
Sbjct: 301 ILELA 305


>gi|295098596|emb|CBK87686.1| D-alanine--D-alanine ligase [Enterobacter cloacae subsp. cloacae
           NCTC 9394]
          Length = 306

 Score =  360 bits (924), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 108/305 (35%), Positives = 166/305 (54%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL+SG A  + L + G     +D        L  +  D AF  LHG
Sbjct: 5   IAVLFGGTSAEREVSLNSGAAVLAGLREGGVDAHPVDPKEVDVTQLKAMGFDKAFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119
             GEDG +Q +LEL+ +PYT SG++ASA+SMDK+RSK +     +PV P + + R   + 
Sbjct: 65  RGGEDGTLQGLLELIGMPYTGSGVMASAISMDKLRSKLLWQGADLPVAPWVALTRREYEM 124

Query: 120 --------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P ++KP + GSS+G+  +  D+++ L    + ++ H +++LIE++
Sbjct: 125 GLSDSVNTRIAALGLPVIVKPSREGSSVGMSKV--DKAVDLADALALAFQHDEEVLIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L    I  P   FY YE KY S  + +  PA +  +   E+Q L 
Sbjct: 183 LSGPEFTVAMLGEEILPSIRIQ-PAGVFYDYEAKYLSDETQYFCPAGLEAEREAELQSLV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A   +GCRG  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 242 LKAWNVLGCRGWGRIDVMLDG-DGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300

Query: 292 MVEDA 296
           +++ A
Sbjct: 301 ILDQA 305


>gi|261338914|ref|ZP_05966772.1| hypothetical protein ENTCAN_05112 [Enterobacter cancerogenus ATCC
           35316]
 gi|288318739|gb|EFC57677.1| D-alanine--D-alanine ligase B [Enterobacter cancerogenus ATCC
           35316]
          Length = 306

 Score =  360 bits (924), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 104/305 (34%), Positives = 163/305 (53%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+ER+VSL+SG A  + L + G     +D        L  +  D  F  LHG
Sbjct: 5   IAVLFGGTSAERDVSLNSGAAVLAGLREGGVNAHPVDPKDVDVTQLKAMGFDKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119
             GEDG +Q +L+L+ +PYT SG++ASA+SMDK+RSK +    G+PV P + + R   + 
Sbjct: 65  RGGEDGTLQGLLDLIGLPYTGSGVMASAISMDKLRSKLLWQGAGLPVAPWVALTRREYEM 124

Query: 120 --------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P ++KP + GSS+G+  + K   +P  L    ++ H +++LIE++
Sbjct: 125 GLNDSVNGRIAALGLPVIVKPSREGSSVGMSKVDKAGDLPAALAL--AFQHDEEVLIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L    I  P   FY YE KY S  + +  P+ +      +++ L 
Sbjct: 183 LSGPEYTVAMLGEEILPSIRIQ-PAGVFYDYEAKYLSDETQYFCPSGLEDQREADLRALV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A   +GCRG  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 242 LKAWTVLGCRGWGRIDVMLDG-DGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300

Query: 292 MVEDA 296
           +++ A
Sbjct: 301 ILDQA 305


>gi|30061659|ref|NP_835830.1| D-alanine--D-alanine ligase [Shigella flexneri 2a str. 2457T]
 gi|30039901|gb|AAP15635.1| D-alanine-D-alanine ligase B [Shigella flexneri 2a str. 2457T]
          Length = 306

 Score =  360 bits (924), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 105/305 (34%), Positives = 162/305 (53%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SG A  + L + G     +D        L  +     F  LHG
Sbjct: 5   IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119
             GEDG +Q +LEL+ +PYT SG++ASALS+DK+RSK +    G+PV P + + R   + 
Sbjct: 65  PGGEDGTLQGMLELMGLPYTGSGVMASALSIDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124

Query: 120 --------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P ++KP + GSS+G+  +  + ++   L    ++ H +++LIE++
Sbjct: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRL--AFQHDEEVLIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L    I  P   FY YE KY S  + +  PA +       +Q L 
Sbjct: 183 LSGPEFTVAILGEEILPSIRIQ-PSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A   +GC+G  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 242 LKAWTTLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300

Query: 292 MVEDA 296
           ++E A
Sbjct: 301 ILELA 305


>gi|333010588|gb|EGK30021.1| D-alanine--D-alanine ligase B [Shigella flexneri VA-6]
          Length = 306

 Score =  360 bits (924), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 105/305 (34%), Positives = 162/305 (53%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SG A  + L + G     +D        L  +     F  LHG
Sbjct: 5   IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119
             GEDG +Q +LEL+ +PYT SG++ASALS+DK+RSK +    G+PV P + + R   + 
Sbjct: 65  RGGEDGTLQGMLELMGLPYTGSGVMASALSIDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124

Query: 120 --------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P ++KP + GSS+G+  +  + ++   L    ++ H +++LIE++
Sbjct: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRL--AFQHDEEVLIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L    I  P   FY YE KY S  + +  PA +       +Q L 
Sbjct: 183 LSGPEFTVAILGEEILPSIRIQ-PSGTFYDYEAKYLSDETQYFCPAGLKASQEANLQALV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A   +GC+G  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 242 LKAWTTLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300

Query: 292 MVEDA 296
           ++E A
Sbjct: 301 ILELA 305


>gi|15799776|ref|NP_285788.1| D-alanine--D-alanine ligase [Escherichia coli O157:H7 EDL933]
 gi|15829350|ref|NP_308123.1| D-alanine--D-alanine ligase [Escherichia coli O157:H7 str. Sakai]
 gi|168751398|ref|ZP_02776420.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str.
           EC4113]
 gi|168755700|ref|ZP_02780707.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str.
           EC4401]
 gi|168764029|ref|ZP_02789036.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str.
           EC4501]
 gi|168771316|ref|ZP_02796323.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str.
           EC4486]
 gi|168776936|ref|ZP_02801943.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str.
           EC4196]
 gi|168781977|ref|ZP_02806984.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str.
           EC4076]
 gi|168789619|ref|ZP_02814626.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str. EC869]
 gi|168801519|ref|ZP_02826526.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str. EC508]
 gi|195939308|ref|ZP_03084690.1| D-alanine--D-alanine ligase [Escherichia coli O157:H7 str. EC4024]
 gi|208806008|ref|ZP_03248345.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str.
           EC4206]
 gi|208813450|ref|ZP_03254779.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str.
           EC4045]
 gi|208821506|ref|ZP_03261826.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str.
           EC4042]
 gi|209399854|ref|YP_002268700.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str.
           EC4115]
 gi|217325585|ref|ZP_03441669.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str.
           TW14588]
 gi|254791229|ref|YP_003076066.1| D-alanine--D-alanine ligase [Escherichia coli O157:H7 str. TW14359]
 gi|261226849|ref|ZP_05941130.1| D-alanine:D-alanine ligase [Escherichia coli O157:H7 str. FRIK2000]
 gi|261255253|ref|ZP_05947786.1| D-alanine:D-alanine ligase [Escherichia coli O157:H7 str. FRIK966]
 gi|22095573|sp|Q8X9Y6|DDLB_ECO57 RecName: Full=D-alanine--D-alanine ligase B; AltName:
           Full=D-Ala-D-Ala ligase B; AltName: Full=D-alanylalanine
           synthetase B
 gi|12512798|gb|AAG54396.1|AE005186_2 D-alanine-D-alanine ligase B, affects cell division [Escherichia
           coli O157:H7 str. EDL933]
 gi|13359552|dbj|BAB33519.1| D-alanine-D-alanine ligase B [Escherichia coli O157:H7 str. Sakai]
 gi|187767759|gb|EDU31603.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str.
           EC4196]
 gi|188014545|gb|EDU52667.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str.
           EC4113]
 gi|189000480|gb|EDU69466.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str.
           EC4076]
 gi|189356982|gb|EDU75401.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str.
           EC4401]
 gi|189359901|gb|EDU78320.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str.
           EC4486]
 gi|189365902|gb|EDU84318.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str.
           EC4501]
 gi|189370780|gb|EDU89196.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str. EC869]
 gi|189376378|gb|EDU94794.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str. EC508]
 gi|208725809|gb|EDZ75410.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str.
           EC4206]
 gi|208734727|gb|EDZ83414.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str.
           EC4045]
 gi|208741629|gb|EDZ89311.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str.
           EC4042]
 gi|209161254|gb|ACI38687.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str.
           EC4115]
 gi|209746524|gb|ACI71569.1| D-alanine-D-alanine ligase B [Escherichia coli]
 gi|209746526|gb|ACI71570.1| D-alanine-D-alanine ligase B [Escherichia coli]
 gi|209746528|gb|ACI71571.1| D-alanine-D-alanine ligase B [Escherichia coli]
 gi|209746532|gb|ACI71573.1| D-alanine-D-alanine ligase B [Escherichia coli]
 gi|217321806|gb|EEC30230.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str.
           TW14588]
 gi|254590629|gb|ACT69990.1| D-alanine:D-alanine ligase [Escherichia coli O157:H7 str. TW14359]
 gi|320190385|gb|EFW65035.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str.
           EC1212]
 gi|320642131|gb|EFX11482.1| D-alanine--D-alanine ligase [Escherichia coli O157:H7 str. G5101]
 gi|320647494|gb|EFX16289.1| D-alanine--D-alanine ligase [Escherichia coli O157:H- str. 493-89]
 gi|320652828|gb|EFX21066.1| D-alanine--D-alanine ligase [Escherichia coli O157:H- str. H 2687]
 gi|320668838|gb|EFX35633.1| D-alanine--D-alanine ligase [Escherichia coli O157:H7 str. LSU-61]
 gi|326345188|gb|EGD68931.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str. 1125]
 gi|326346958|gb|EGD70692.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str. 1044]
          Length = 306

 Score =  360 bits (924), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 106/305 (34%), Positives = 162/305 (53%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SG A  + L + G     +D        L  +     F  LHG
Sbjct: 5   IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119
             GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK +    G+PV P + + R   + 
Sbjct: 65  RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRVEFEK 124

Query: 120 --------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P ++KP + GSS+G+  +  + ++   L    ++ H +++LIE++
Sbjct: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRL--AFQHDEEVLIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L    I  P   FY YE KY S  + +  PA +       +Q L 
Sbjct: 183 LSGPEFTVAILGEEILPSVRIQ-PSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A   +GC+G  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 242 LKAWTTLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300

Query: 292 MVEDA 296
           ++E A
Sbjct: 301 ILELA 305


>gi|261867482|ref|YP_003255404.1| D-alanine--D-alanine ligase [Aggregatibacter actinomycetemcomitans
           D11S-1]
 gi|261412814|gb|ACX82185.1| D-alanine--D-alanine ligase B [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 309

 Score =  359 bits (923), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 112/303 (36%), Positives = 175/303 (57%), Gaps = 10/303 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SG+A  +AL   G+    ID        L     D  FN+LHG
Sbjct: 10  IAVLLGGTSAEREVSLNSGEAVLNALRKQGYDAHPIDPKTFPVATLKEQGFDRVFNILHG 69

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFT 117
             GEDG +Q +LE + IPYT  G++ SAL+MDKMR+K +  + G+PV    +V   NR  
Sbjct: 70  RGGEDGTMQGLLEQIGIPYTGCGVMTSALTMDKMRTKMLWKAFGLPVAEMEIVTTENRVN 129

Query: 118 MDSQ---HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
           ++ +     +  P ++KP   GSS+G+  +K    +   +  +  +   + +LIE+++ G
Sbjct: 130 LNPESVVKKLGLPLMVKPSLEGSSVGLTKVKAVDELESAVDFALKF--DNTVLIEEWLAG 187

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
            E T  V+ +  L   +I VP+ +FY Y+ KY S N+ +  PA +  +  +E++RL   A
Sbjct: 188 DEFTVPVLDNEVLPSIKI-VPEGEFYDYDAKYISDNTQYFCPAGLSEEREQELRRLVKQA 246

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           +  +GCRG SR D + D    K   +E+N  PGMT  S+FP+ AA  GYSF +L+  ++E
Sbjct: 247 YDVVGCRGWSRIDVMADA-EGKFRLVEVNTNPGMTSHSLFPKSAATVGYSFAQLVEKILE 305

Query: 295 DAS 297
            ++
Sbjct: 306 LSA 308


>gi|320179654|gb|EFW54603.1| D-alanine--D-alanine ligase B [Shigella boydii ATCC 9905]
          Length = 306

 Score =  359 bits (923), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 105/305 (34%), Positives = 162/305 (53%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SG A  + L + G     +D        L  +     F  LHG
Sbjct: 5   IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119
             GEDG +Q +LEL+ +PYT SG++ASALS+DK+RSK +    G+PV P + + R   + 
Sbjct: 65  RGGEDGTLQGMLELMGLPYTGSGVMASALSIDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124

Query: 120 --------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P ++KP + GSS+G+  +  + ++   L    ++ H +++LIE++
Sbjct: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMTKVVAENALQDALRL--AFQHDEEVLIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L    I  P   FY YE KY S  + +  PA +       +Q L 
Sbjct: 183 LSGPEFTVAILGEEILPSIRIQ-PAGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A   +GC+G  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 242 LKAWTTLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300

Query: 292 MVEDA 296
           ++E A
Sbjct: 301 ILELA 305


>gi|253774878|ref|YP_003037709.1| D-alanine--D-alanine ligase [Escherichia coli 'BL21-Gold(DE3)pLysS
           AG']
 gi|254160214|ref|YP_003043322.1| D-alanine--D-alanine ligase [Escherichia coli B str. REL606]
 gi|297518217|ref|ZP_06936603.1| D-alanine--D-alanine ligase [Escherichia coli OP50]
 gi|300931781|ref|ZP_07147081.1| D-ala D-ala ligase [Escherichia coli MS 187-1]
 gi|242375928|emb|CAQ30609.1| D-alanine-D-alanine ligase B [Escherichia coli BL21(DE3)]
 gi|253325922|gb|ACT30524.1| D-alanine/D-alanine ligase [Escherichia coli 'BL21-Gold(DE3)pLysS
           AG']
 gi|253972115|gb|ACT37786.1| D-alanylalanine synthetase [Escherichia coli B str. REL606]
 gi|253976324|gb|ACT41994.1| D-alanylalanine synthetase [Escherichia coli BL21(DE3)]
 gi|300460441|gb|EFK23934.1| D-ala D-ala ligase [Escherichia coli MS 187-1]
 gi|323960038|gb|EGB55684.1| D-alanine-D-alanine ligase [Escherichia coli H489]
          Length = 306

 Score =  359 bits (923), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 105/305 (34%), Positives = 161/305 (52%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SG A  + L + G     +D        L  +     F  LHG
Sbjct: 5   IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119
             GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK +    G+PV P + + R   + 
Sbjct: 65  RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124

Query: 120 --------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P ++KP + GSS+G+  +  + ++   L    ++ H +++LIE++
Sbjct: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRL--AFQHDEEVLIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++ +  L    I  P   FY YE KY S  + +  PA +       +Q L 
Sbjct: 183 LSGPEFTVAILDEEILPSIRIQ-PSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A   +GC+G  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 242 LKAWTTLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300

Query: 292 MVEDA 296
           ++E A
Sbjct: 301 ILELA 305


>gi|227327089|ref|ZP_03831113.1| D-alanine--D-alanine ligase [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 306

 Score =  359 bits (923), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 110/305 (36%), Positives = 168/305 (55%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL SG+A  + L+DAG     +D        L        F  LHG
Sbjct: 5   VAVLLGGTSAEREVSLLSGQAVLAGLKDAGINAHAVDTRDVSVTTLKEEGFTKIFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LE L +PYT SG++ASAL+MDK+R+KQV  + G+PV P + ++R     
Sbjct: 65  RGGEDGTLQGVLEFLGLPYTGSGVMASALTMDKLRTKQVWQAVGLPVSPYVALDRRQYSE 124

Query: 121 QHL---------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P ++KP + GSS+G+  +     +P  L    ++ H D +L+E++
Sbjct: 125 TAANALLAKFTHLGLPLIVKPSREGSSVGMSKVNTLSELPAAL--EEAFRHDDDILVEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++GD  L    I  P   FY YE KY S ++ +  P+ +P +  + +  LA
Sbjct: 183 LSGPEYTVAILGDEVLPSIRIQ-PAGTFYDYEAKYLSDDTQYFCPSGLPDEQEQALAGLA 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A++A+GC G  R DF+ D      + LE+N  PGMT  S+ P  A   G +F +L++ 
Sbjct: 242 MAAYRAVGCSGWGRVDFMLD-SDGAFYLLEVNTSPGMTSHSLVPMAARQRGLTFSQLVVK 300

Query: 292 MVEDA 296
           ++E A
Sbjct: 301 ILERA 305


>gi|227113984|ref|ZP_03827640.1| D-alanine--D-alanine ligase [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 306

 Score =  359 bits (923), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 111/305 (36%), Positives = 168/305 (55%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL SG+A  + L++AG     +D        L        F  LHG
Sbjct: 5   VAVLLGGTSAEREVSLLSGQAVLAGLKEAGINAHAVDTRDVSVTTLKEEGFTKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LE L +PYT SG++ASAL+MDK+R+KQV  + G+PV P + ++R     
Sbjct: 65  RGGEDGTLQGVLEFLGLPYTGSGVMASALTMDKLRTKQVWQAVGLPVSPYVALDRRQYSE 124

Query: 121 QHL---------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P ++KP + GSS+G+  +     +P  L    ++ H D +LIE++
Sbjct: 125 TAANALLAKFTHLGLPLIVKPSREGSSVGMSKVNTLSELPAAL--EEAFRHDDDILIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++GD  L    I  P   FY YE KY S ++ +  P+ +P D  + +  LA
Sbjct: 183 LSGPEYTVAILGDDVLPSIRIQ-PAGTFYDYEAKYLSDDTQYFCPSGLPDDQEQALAGLA 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A++A+GC G  R DF+ D      + LE+N  PGMT  S+ P  A   G +F +L++ 
Sbjct: 242 MAAYRAVGCSGWGRVDFMLD-SDGAFYLLEVNTSPGMTSHSLVPMAARQRGLTFSQLVVK 300

Query: 292 MVEDA 296
           ++E A
Sbjct: 301 ILELA 305


>gi|254037507|ref|ZP_04871584.1| ddl cell wall enzyme [Escherichia sp. 1_1_43]
 gi|226840613|gb|EEH72615.1| ddl cell wall enzyme [Escherichia sp. 1_1_43]
          Length = 306

 Score =  359 bits (922), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 106/305 (34%), Positives = 162/305 (53%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SG A  + L + G     +D        L  +     F  LHG
Sbjct: 5   IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGLQKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119
             GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK +    G+PV P + + R   + 
Sbjct: 65  RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124

Query: 120 --------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P ++KP + GSS+G+  +  + ++   L    ++ H +++LIE++
Sbjct: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRL--AFQHDEEVLIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L    I  P   FY YE KY S  + +  PA +       +Q L 
Sbjct: 183 LSGPEFTVAILGEEILPSIRIQ-PSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A   +GC+G  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 242 LKAWTTLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300

Query: 292 MVEDA 296
           ++E A
Sbjct: 301 ILELA 305


>gi|91209156|ref|YP_539142.1| D-alanine--D-alanine ligase [Escherichia coli UTI89]
 gi|117622378|ref|YP_851291.1| D-alanine--D-alanine ligase [Escherichia coli APEC O1]
 gi|218557032|ref|YP_002389945.1| D-alanine--D-alanine ligase [Escherichia coli S88]
 gi|237704241|ref|ZP_04534722.1| D-alanine-D-alanine ligase B [Escherichia sp. 3_2_53FAA]
 gi|91070730|gb|ABE05611.1| D-alanine--D-alanine ligase B [Escherichia coli UTI89]
 gi|115511502|gb|ABI99576.1| D-alanine--D-alanine ligase B [Escherichia coli APEC O1]
 gi|218363801|emb|CAR01461.1| D-alanine:D-alanine ligase [Escherichia coli S88]
 gi|226902153|gb|EEH88412.1| D-alanine-D-alanine ligase B [Escherichia sp. 3_2_53FAA]
 gi|294490795|gb|ADE89551.1| D-alanine--D-alanine ligase B [Escherichia coli IHE3034]
 gi|307629666|gb|ADN73970.1| D-alanine--D-alanine ligase [Escherichia coli UM146]
 gi|315285162|gb|EFU44607.1| D-ala D-ala ligase [Escherichia coli MS 110-3]
 gi|323950912|gb|EGB46789.1| D-alanine-D-alanine ligase [Escherichia coli H252]
 gi|323955290|gb|EGB51063.1| D-alanine-D-alanine ligase [Escherichia coli H263]
          Length = 306

 Score =  359 bits (922), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 106/305 (34%), Positives = 162/305 (53%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SG A  + L + G     +D        L  +     F  LHG
Sbjct: 5   IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119
             GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK +    G+PV P + + R   + 
Sbjct: 65  RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124

Query: 120 --------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P ++KP + GSS+G+  +  + ++   L    ++ H +++LIE++
Sbjct: 125 GLNDKQLAEISSLGLPVIVKPSREGSSVGMSKVVAENALQDALRL--AFQHDEEVLIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L    I  P   FY YE KY S  + +  PA +       +Q L 
Sbjct: 183 LSGPEFTIAILGEEILPSIRIQ-PAGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A   +GC+G  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 242 LKAWTTLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300

Query: 292 MVEDA 296
           ++E A
Sbjct: 301 ILELA 305


>gi|261345642|ref|ZP_05973286.1| D-alanine--D-alanine ligase B [Providencia rustigianii DSM 4541]
 gi|282566124|gb|EFB71659.1| D-alanine--D-alanine ligase B [Providencia rustigianii DSM 4541]
          Length = 306

 Score =  359 bits (922), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 116/306 (37%), Positives = 163/306 (53%), Gaps = 13/306 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL SG A  + L  AG     ID      + L     D  F  LHG
Sbjct: 5   VAVLLGGTSAEREVSLQSGNAVLAGLRQAGIDAHPIDTQNFPVVTLKDAGFDKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LE L +PYT SG++ASALSMDK+R+KQ+    G+ V P I +NR    +
Sbjct: 65  RGGEDGTIQGMLEFLGLPYTGSGVMASALSMDKLRTKQLWQGAGLSVSPYISLNRQKYTN 124

Query: 121 QHL---------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P ++KP   GSS+G+  +    ++P  +    ++   D LLIE++
Sbjct: 125 IKKEQLAQQVKHLGLPLIVKPSLEGSSVGMSKVDSLDALPEAI--ELAFRFDDTLLIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  V+GD  L    I  P   FY YE KY S  + +  P+ +      E+  +A
Sbjct: 183 LSGPEYTVAVLGDNVLPSIRIQPP-GVFYDYEAKYLSDETQYFCPSGLDSQREAELADIA 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A+QA+GCRG  R D + D    K + LE+N  PGMT  S+ P  A  AG  F +L+  
Sbjct: 242 MQAYQAVGCRGWGRVDVMQD-SDGKFYLLEVNTSPGMTSHSLVPMAARQAGLDFSQLVAR 300

Query: 292 MVEDAS 297
           ++E AS
Sbjct: 301 ILELAS 306


>gi|170683837|ref|YP_001742214.1| D-alanine--D-alanine ligase [Escherichia coli SMS-3-5]
 gi|170521555|gb|ACB19733.1| D-alanine--D-alanine ligase B [Escherichia coli SMS-3-5]
          Length = 306

 Score =  359 bits (922), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 106/305 (34%), Positives = 162/305 (53%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SG A  + L + G     +D        L  +     F  LHG
Sbjct: 5   IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119
             GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK +    G+PV P + + R   + 
Sbjct: 65  RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124

Query: 120 --------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P ++KP + GSS+G+  +  + ++   L    ++ H +++LIE++
Sbjct: 125 GLNDQQLAEISSLGLPVIVKPSREGSSVGMSKVVAENALQDALRL--AFQHDEEVLIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L    I  P   FY YE KY S  + +  PA +       +Q L 
Sbjct: 183 LSGPEFTVAILGEEILPSIRIQ-PAGTFYDYEAKYLSDETQYFCPAGLEALQEANLQALV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A   +GC+G  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 242 LKAWTTLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300

Query: 292 MVEDA 296
           ++E A
Sbjct: 301 ILELA 305


>gi|110680528|ref|YP_683535.1| D-alanine--D-alanine ligase [Roseobacter denitrificans OCh 114]
 gi|109456644|gb|ABG32849.1| D-alanine--D-alanine ligase [Roseobacter denitrificans OCh 114]
          Length = 332

 Score =  359 bits (922), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 138/302 (45%), Positives = 188/302 (62%), Gaps = 8/302 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S EREVSLSSG+ACA+AL D G+ V +ID    +G  L    PD   N LHG
Sbjct: 37  VAVLLGGPSVEREVSLSSGQACAAALRDEGYDVVEIDAGHDLGARLIDAGPDAVLNCLHG 96

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG VQ +LE + +PY+HSG+LASAL+MDK RSK    + G+PV PS++     +  
Sbjct: 97  RWGEDGCVQGLLEWMGVPYSHSGVLASALAMDKQRSKDAFVAAGLPVVPSVIAKAADVRM 156

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            H++ PPYV+KP   GSS+G+ ++ +  + P  L +    +   ++++E +  G ELT  
Sbjct: 157 GHVMQPPYVVKPNNEGSSVGVYLVHEAANGPPQLSE----DMPQEVMVEAFAPGRELTTT 212

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V+GD +L VT+I      +Y Y+ KY    S HV+PA IP DI+      A  AH A+GC
Sbjct: 213 VVGDRALTVTDIVT--DGWYDYDAKYKPGGSHHVVPADIPADIFDLCMDYALRAHHALGC 270

Query: 241 RGISRSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           RG+SR+DF +D       +  LE N QPGMT  S+ PE AA  G +F +L  WMVEDASC
Sbjct: 271 RGVSRTDFRWDETKGAAGLILLETNTQPGMTATSLTPEQAAVTGMTFGKLCAWMVEDASC 330

Query: 299 LR 300
            R
Sbjct: 331 DR 332


>gi|168464318|ref|ZP_02698221.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|194444863|ref|YP_002039362.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|207855644|ref|YP_002242295.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|194403526|gb|ACF63748.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|195632730|gb|EDX51184.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|206707447|emb|CAR31720.1| D-alanine:D-alanine ligase B [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
          Length = 306

 Score =  359 bits (922), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 109/305 (35%), Positives = 165/305 (54%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+ER+VSL+SG A  + L + G     +D        L  +     F  LHG
Sbjct: 5   IAVLLGGTSAERDVSLNSGAAVLAGLREGGIDAHPVDPQEVDVAQLKAMGFQKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LELL +PYT SG++ASALSMDK+RSK +    G+PV P + + R   + 
Sbjct: 65  RGGEDGTLQGMLELLGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124

Query: 121 ---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P ++KP + GSS+G+  + ++ ++   L  S ++ H D++LIE++
Sbjct: 125 GLSEEQKARISALGLPLIVKPSREGSSVGMTKVVEENALQGAL--SLAFQHDDEILIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L    I  P   FY YE KY S  + +  PA +       +Q L 
Sbjct: 183 LCGPEFTVAIVGEEILPSIRIQ-PAGTFYDYEAKYLSDETQYFCPAGLDASQEAALQSLV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A +A+GC G  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 242 LQAWKALGCTGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300

Query: 292 MVEDA 296
           ++E A
Sbjct: 301 ILELA 305


>gi|260853305|ref|YP_003227196.1| D-alanine:D-alanine ligase [Escherichia coli O26:H11 str. 11368]
 gi|257751954|dbj|BAI23456.1| D-alanine:D-alanine ligase [Escherichia coli O26:H11 str. 11368]
 gi|323157841|gb|EFZ43944.1| D-alanine--D-alanine ligase B [Escherichia coli EPECa14]
          Length = 306

 Score =  359 bits (921), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 106/305 (34%), Positives = 162/305 (53%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SG A  + L + G     +D        L  +     F  LHG
Sbjct: 5   IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119
             GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK +    G+PV P + + R   + 
Sbjct: 65  RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124

Query: 120 --------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P ++KP + GSS+G+  +  + ++   L    ++ H +++LIE++
Sbjct: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRL--AFQHDEEVLIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L    I  P   FY YE KY S  + +  PA +       +Q L 
Sbjct: 183 LSGPEFTVAILGEEILPSIRIQ-PSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A   +GC+G  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 242 LKAWTTLGCKGWGRIDVMLDSY-GQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300

Query: 292 MVEDA 296
           ++E A
Sbjct: 301 ILELA 305


>gi|119387195|ref|YP_918250.1| D-alanine--D-alanine ligase [Paracoccus denitrificans PD1222]
 gi|119377790|gb|ABL72554.1| D-alanine--D-alanine ligase [Paracoccus denitrificans PD1222]
          Length = 311

 Score =  359 bits (921), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 135/301 (44%), Positives = 193/301 (64%), Gaps = 8/301 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VLMGG S+EREVSLSSG+ CA AL  AG++V ++D  R +   LA   PD+ FN LHG
Sbjct: 16  VVVLMGGPSAEREVSLSSGRECAVALRQAGYEVVELDAGRDLPARLAEHAPDVVFNALHG 75

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG VQ +LE L   YTHSG+LASAL+MDK R+K+++   G+PV  S++ +   + +
Sbjct: 76  RWGEDGCVQGLLEWLGWRYTHSGVLASALAMDKSRAKEILRLAGLPVLDSLIADADEVRA 135

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +H+++PPYV+KP   GSS+G+ ++ +  + P  L          ++++E Y  G ELT  
Sbjct: 136 RHVMAPPYVVKPNDEGSSVGVYIVHEAANGPPQLSD----KMPARVMVETYAPGRELTVA 191

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V+GD +L VTEI      +Y Y+ KY+   S HV+PA IP +I    +  A  AH+A+GC
Sbjct: 192 VLGDRALGVTEIVT--EGWYDYDAKYTPGGSRHVIPADIPEEIAAACRDHAVQAHRALGC 249

Query: 241 RGISRSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           RG++RSDF +D       +  LE+N QPGMTP S+ PE AA++G  F  L  W+VE+A C
Sbjct: 250 RGLTRSDFRWDESRGLDGLIILEVNTQPGMTPTSLAPEQAAHSGMDFPALCRWIVEEALC 309

Query: 299 L 299
            
Sbjct: 310 R 310


>gi|26246025|ref|NP_752064.1| D-alanine--D-alanine ligase [Escherichia coli CFT073]
 gi|227885003|ref|ZP_04002808.1| D-alanine--D-alanine ligase [Escherichia coli 83972]
 gi|300981129|ref|ZP_07175375.1| D-ala D-ala ligase [Escherichia coli MS 45-1]
 gi|301048484|ref|ZP_07195509.1| D-ala D-ala ligase [Escherichia coli MS 185-1]
 gi|29336713|sp|Q8FL63|DDLB_ECOL6 RecName: Full=D-alanine--D-alanine ligase B; AltName:
           Full=D-Ala-D-Ala ligase B; AltName: Full=D-alanylalanine
           synthetase B
 gi|26106422|gb|AAN78608.1|AE016755_108 D-alanine--D-alanine ligase B [Escherichia coli CFT073]
 gi|227837832|gb|EEJ48298.1| D-alanine--D-alanine ligase [Escherichia coli 83972]
 gi|300299670|gb|EFJ56055.1| D-ala D-ala ligase [Escherichia coli MS 185-1]
 gi|300409031|gb|EFJ92569.1| D-ala D-ala ligase [Escherichia coli MS 45-1]
 gi|307551936|gb|ADN44711.1| D-alanine--D-alanine ligase B [Escherichia coli ABU 83972]
 gi|315294713|gb|EFU54056.1| D-ala D-ala ligase [Escherichia coli MS 153-1]
          Length = 306

 Score =  359 bits (921), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 106/305 (34%), Positives = 162/305 (53%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SG A  + L + G     +D        L  +     F  LHG
Sbjct: 5   IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119
             GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK +    G+PV P + + R   + 
Sbjct: 65  RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124

Query: 120 --------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P ++KP + GSS+G+  +  + ++   L    ++ H +++LIE++
Sbjct: 125 GLNDKQLAEISSLGLPVIVKPSREGSSVGMSKVVAENALQDALRL--AFQHDEEVLIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L    I  P   FY YE KY S  + +  PA +       +Q L 
Sbjct: 183 LSGPEFTVAILGEEILPSIRIQ-PAGTFYDYEAKYLSDETQYFCPAGLEALQEANLQALV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A   +GC+G  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 242 LKAWTTLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300

Query: 292 MVEDA 296
           ++E A
Sbjct: 301 ILELA 305


>gi|204927234|ref|ZP_03218436.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|204323899|gb|EDZ09094.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
          Length = 306

 Score =  359 bits (921), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 108/305 (35%), Positives = 165/305 (54%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+ER+VSL+SG A  + L + G     +D        L  +     F  LHG
Sbjct: 5   IAVLLGGTSAERDVSLNSGAAVLAGLREGGIDAHPVDPQEVDVAQLKAMGFQKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LELL +PYT SG++ASALSMDK+RSK +    G+PV P + + R   + 
Sbjct: 65  RGGEDGTLQGMLELLGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124

Query: 121 ---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P ++KP + GSS+G+  + ++ ++   L  S ++ H D++L+E++
Sbjct: 125 GLSEEQKARISALGLPLIVKPSREGSSVGMTKVVEENALQGAL--SLAFQHDDEVLVEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L    I  P   FY YE KY S  + +  PA +       +Q L 
Sbjct: 183 LCGPEFTVAIVGEEILPSIRIQ-PAGTFYDYEAKYLSDETQYFCPAGLEASQEAALQSLV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A +A+GC G  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 242 LQAWKALGCTGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300

Query: 292 MVEDA 296
           ++E A
Sbjct: 301 ILELA 305


>gi|331661138|ref|ZP_08362070.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB)
           (D-Ala-D-Ala ligase B) [Escherichia coli TA206]
 gi|331052180|gb|EGI24219.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB)
           (D-Ala-D-Ala ligase B) [Escherichia coli TA206]
          Length = 306

 Score =  359 bits (921), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 106/305 (34%), Positives = 161/305 (52%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SG A  + L + G     +D        L  +     F  LHG
Sbjct: 5   IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119
             GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK +    G+PV P + + R   + 
Sbjct: 65  RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124

Query: 120 --------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                          P ++KP + GSS+G+  +  + ++   L    ++ H +++LIE++
Sbjct: 125 GLNDKQLAEISSQGLPVIVKPSREGSSVGMSKVVAENALQDALRL--AFQHDEEVLIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L    I  P   FY YE KY S  + +  PA +       +Q L 
Sbjct: 183 LSGPEFTVAILGEEILPSIRIQ-PAGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A   +GC+G  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 242 LKAWTTLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300

Query: 292 MVEDA 296
           ++E A
Sbjct: 301 ILELA 305


>gi|16763520|ref|NP_459135.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|167990003|ref|ZP_02571103.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|168820876|ref|ZP_02832876.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|197264240|ref|ZP_03164314.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|22095577|sp|Q8ZRU1|DDLB_SALTY RecName: Full=D-alanine--D-alanine ligase B; AltName:
           Full=D-Ala-D-Ala ligase B; AltName: Full=D-alanylalanine
           synthetase B
 gi|16418630|gb|AAL19094.1| D-alanine-D-alanine ligase B [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|197242495|gb|EDY25115.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|205331483|gb|EDZ18247.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|205342502|gb|EDZ29266.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|261245363|emb|CBG23152.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|267991808|gb|ACY86693.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
 gi|301156758|emb|CBW16233.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|312911099|dbj|BAJ35073.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
 gi|320084373|emb|CBY94166.1| D-alanine-D-alanine ligase B, affects cell division [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           2007-60-3289-1]
 gi|321222296|gb|EFX47368.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica
           serovar Typhimurium str. TN061786]
 gi|323128450|gb|ADX15880.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 4/74]
 gi|332987083|gb|AEF06066.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Typhimurium str. UK-1]
          Length = 306

 Score =  359 bits (921), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 109/305 (35%), Positives = 165/305 (54%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+ER+VSL+SG A  + L + G     +D        L  +     F  LHG
Sbjct: 5   IAVLLGGTSAERDVSLNSGAAVLAGLREGGINAHPVDPQEVDVAQLKAMGFQKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LELL +PYT SG++ASALSMDK+RSK +    G+PV P + + R   + 
Sbjct: 65  RGGEDGTLQGMLELLGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124

Query: 121 ---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P ++KP + GSS+G+  + ++ ++   L  S ++ H D++LIE++
Sbjct: 125 GLSEEQKARISALGLPLIVKPSREGSSVGMTKVVEENALQGAL--SLAFQHDDEILIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L    I  P   FY YE KY S  + +  PA +       +Q L 
Sbjct: 183 LCGPEFTVAIVGEEILPSIRIQ-PAGTFYDYEAKYLSDETQYFCPAGLDASQEAALQSLV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A +A+GC G  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 242 LQAWKALGCTGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300

Query: 292 MVEDA 296
           ++E A
Sbjct: 301 ILELA 305


>gi|157155564|ref|YP_001461262.1| D-alanine--D-alanine ligase [Escherichia coli E24377A]
 gi|157077594|gb|ABV17302.1| D-alanine--D-alanine ligase B [Escherichia coli E24377A]
          Length = 306

 Score =  358 bits (920), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 106/305 (34%), Positives = 162/305 (53%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SG A  + L + G     +D        L  +     F  LHG
Sbjct: 5   IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119
             GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK +    G+PV P + + R   + 
Sbjct: 65  RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVSPWVALTRAEFEK 124

Query: 120 --------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P ++KP + GSS+G+  +  + ++   L    ++ H +++LIE++
Sbjct: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRL--AFQHDEEVLIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L    I  P   FY YE KY S  + +  PA +       +Q L 
Sbjct: 183 LSGPEFTVAILGEEILPSIRIQ-PAGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A   +GC+G  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 242 LKAWTTLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300

Query: 292 MVEDA 296
           ++E A
Sbjct: 301 ILELA 305


>gi|270263961|ref|ZP_06192229.1| D-alanine--D-alanine ligase [Serratia odorifera 4Rx13]
 gi|270042154|gb|EFA15250.1| D-alanine--D-alanine ligase [Serratia odorifera 4Rx13]
          Length = 306

 Score =  358 bits (920), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 108/305 (35%), Positives = 162/305 (53%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL SG A  + L +AG     ID+       L        F  LHG
Sbjct: 5   VAVLLGGTSAEREVSLQSGAAVLAGLREAGIDAHGIDIRDFPVTQLKEHGFTKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LE LE+PYT SG++ASAL+MDK R+K V  S G+PV P + +NR     
Sbjct: 65  RGGEDGTLQGMLEFLELPYTGSGVMASALTMDKWRTKMVWQSMGLPVAPYVALNRLQYAG 124

Query: 121 QHL---------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P ++KP + GSS+G+  + +  ++   L     + H D +L+E++
Sbjct: 125 AEKQSLIARVEALGLPLIVKPSREGSSVGMSKVTERDALEAAL--EEGFRHDDDVLVEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++GD  L    I  P   FY Y+ KY S ++ +  P+ +  +   E+  LA
Sbjct: 183 LSGPEYTVAMLGDQVLPSIRIQ-PAGVFYDYQAKYISDDTQYFCPSGLGAEQEAEMAALA 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A++ + C G  R D + D      + LE+N  PGMT  S+ P  A  +G SF +L+  
Sbjct: 242 LRAYRGLDCSGWGRVDVMQD-SDGSFYLLEVNTSPGMTSHSLVPMAARQSGLSFSQLVAR 300

Query: 292 MVEDA 296
           ++E A
Sbjct: 301 ILELA 305


>gi|110640305|ref|YP_668033.1| D-alanine--D-alanine ligase [Escherichia coli 536]
 gi|191174586|ref|ZP_03036080.1| D-alanine--D-alanine ligase B [Escherichia coli F11]
 gi|300984514|ref|ZP_07177006.1| D-ala D-ala ligase [Escherichia coli MS 200-1]
 gi|110341897|gb|ABG68134.1| D-alanine-D-alanine ligase B [Escherichia coli 536]
 gi|190905133|gb|EDV64778.1| D-alanine--D-alanine ligase B [Escherichia coli F11]
 gi|300306683|gb|EFJ61203.1| D-ala D-ala ligase [Escherichia coli MS 200-1]
 gi|324012255|gb|EGB81474.1| D-ala D-ala ligase [Escherichia coli MS 60-1]
          Length = 306

 Score =  358 bits (920), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 106/305 (34%), Positives = 162/305 (53%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SG A  + L + G     +D        L  +     F  LHG
Sbjct: 5   IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119
             GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK +    G+PV P + + R   + 
Sbjct: 65  RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124

Query: 120 --------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P ++KP + GSS+G+  +  + ++   L    ++ H +++LIE++
Sbjct: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRL--AFQHDEEVLIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L    I  P   FY YE KY S  + +  PA +       +Q L 
Sbjct: 183 LSGPEFTVAILGEEILPSIRIQ-PAGTFYDYEAKYLSDETQYFCPAGLEALQEANLQALV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A   +GC+G  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 242 LKAWTTLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300

Query: 292 MVEDA 296
           ++E A
Sbjct: 301 ILELA 305


>gi|317493277|ref|ZP_07951699.1| D-alanine-D-alanine ligase [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316918670|gb|EFV40007.1| D-alanine-D-alanine ligase [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 306

 Score =  358 bits (920), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 107/306 (34%), Positives = 169/306 (55%), Gaps = 13/306 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL SG+A    L +AG     +D+       L     D  F  LHG
Sbjct: 5   VAVLLGGTSAEREVSLQSGQAVLKGLIEAGIDAHPVDIKDFPATQLKDAGYDKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119
             GEDG +Q +LE L++PYT SG++ASAL+MDK+R+K V  + G+PV P + ++R   D 
Sbjct: 65  RGGEDGTLQGVLEFLQLPYTGSGVMASALTMDKLRTKLVWQASGLPVSPFVAISRAQFDE 124

Query: 120 --------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                   + + +  P ++KP + GSS+G+  +         L++  ++ H D +L+E++
Sbjct: 125 GLTQEMLVALNALGLPLIVKPSREGSSVGMSKVSDASEFDDALVE--AFRHDDDVLVEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T   +G+  L    I  P   FY YE KY S  + +  P+ +  D  +E+  LA
Sbjct: 183 LSGPEYTVAFLGEEILPSIRIQAP-GVFYDYEAKYLSDKTEYFCPSGLSEDRERELAELA 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A++++ C G  R D + D    + + LE+N  PGMT  S+ P  A  +G SF +L+  
Sbjct: 242 RKAYKSLDCSGWGRVDVMMD-SDGEFYLLEVNTAPGMTSHSLVPMAARQSGLSFSQLVAR 300

Query: 292 MVEDAS 297
           ++E A+
Sbjct: 301 ILELAN 306


>gi|149914532|ref|ZP_01903062.1| D-alanine--D-alanine ligase [Roseobacter sp. AzwK-3b]
 gi|149811325|gb|EDM71160.1| D-alanine--D-alanine ligase [Roseobacter sp. AzwK-3b]
          Length = 292

 Score =  358 bits (920), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 137/298 (45%), Positives = 192/298 (64%), Gaps = 8/298 (2%)

Query: 5   MGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGE 64
           MGG S+EREVSLS+G  CA+AL +AG++V ++D    + L L+ + PD+ FN LHG +GE
Sbjct: 1   MGGPSAEREVSLSTGHECAAALREAGYQVVEVDAGPDLYLQLSEVSPDVVFNALHGRWGE 60

Query: 65  DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI 124
           DG VQ +LE + +PYTHSG+LASAL+MDK ++K +  +  +PV  S+L  R  +   H++
Sbjct: 61  DGCVQGLLEWMGLPYTHSGVLASALAMDKQKTKDIYRAEELPVVHSLLARRDDVRRAHVM 120

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
           +PPYV+KP   GSS+G+ +++   S P DL      +  +Q+++E +  G ELT  VMGD
Sbjct: 121 APPYVVKPNNEGSSVGVYLVQDAASAPPDLSD----DMPEQVMVEAFAPGRELTATVMGD 176

Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244
            +L VT+I      +Y Y+ KY+   S HV+PA IP DI+      A  AH+ +GCRG+S
Sbjct: 177 KALTVTDILT--DGWYDYDAKYTPGGSRHVVPADIPADIFDACMDYALRAHRVLGCRGLS 234

Query: 245 RSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           R+DF +D       +  LE N QPGMTP S+ PE A   G SF +L  WMVEDASC R
Sbjct: 235 RTDFRWDEARGLDGLVLLETNTQPGMTPTSLSPEQAKVMGISFPDLCRWMVEDASCNR 292


>gi|323935144|gb|EGB31511.1| D-alanine-D-alanine ligase [Escherichia coli E1520]
          Length = 306

 Score =  358 bits (919), Expect = 6e-97,   Method: Composition-based stats.
 Identities = 105/305 (34%), Positives = 161/305 (52%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SG A  + L + G     +D        L  +     F  LHG
Sbjct: 5   IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119
             GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK +    G+PV   + + R   + 
Sbjct: 65  RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAAWVALTRAEFEK 124

Query: 120 --------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P ++KP + GSS+G+  +  + ++   L    ++ H +++LIE++
Sbjct: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRL--AFQHDEEVLIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L    I  P   FY YE KY S  + +  PA +       +Q L 
Sbjct: 183 LSGPEFTVAILGEEILPSIRIQ-PSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A   +GC+G  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 242 LKAWTTLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300

Query: 292 MVEDA 296
           ++E A
Sbjct: 301 ILELA 305


>gi|260596517|ref|YP_003209088.1| D-alanine--D-alanine ligase [Cronobacter turicensis z3032]
 gi|260215694|emb|CBA28033.1| D-alanine--D-alanine ligase B [Cronobacter turicensis z3032]
          Length = 326

 Score =  358 bits (919), Expect = 6e-97,   Method: Composition-based stats.
 Identities = 108/306 (35%), Positives = 163/306 (53%), Gaps = 13/306 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL SG A  + L+ AG     +D        L     D  F  LHG
Sbjct: 25  IAVLLGGSSAEREVSLQSGSAVLAGLKQAGVDAYAVDPRDVCVTTLKEEGFDKVFIALHG 84

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118
             GEDG +Q  LE L +PYT SG++ASA++MDK+R+K +    G+PV P + + R  +  
Sbjct: 85  RGGEDGTLQGTLEYLGLPYTGSGVMASAITMDKLRTKLLWQGAGLPVAPWVALERHDIRG 144

Query: 119 -------DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P ++KP + GSS+G+  +   Q++   L    ++ H  ++L+E++
Sbjct: 145 GLSEALSARIAALGLPVIVKPSREGSSVGMSKVDSAQALLPAL--ELAFEHDSEVLVEKW 202

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++GD  L    I  P   FY YE KY S  + +  PA I     + +Q L 
Sbjct: 203 LSGPEFTVAILGDDILPSIRIQ-PAGVFYDYEAKYLSDETQYFCPAGIDAGREQALQALV 261

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A + +GCRG  R D + D    + + LE+N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 262 LEAWRVLGCRGWGRVDVMQD-SDGEFYLLEVNTAPGMTSHSLVPMAARQAGMSFSQLVVR 320

Query: 292 MVEDAS 297
           ++E A+
Sbjct: 321 ILELAN 326


>gi|157831486|pdb|1IOW|A Chain A, Complex Of Y216f D-Ala:d-Ala Ligase With Adp And A
           Phosphoryl Phosphinate
          Length = 306

 Score =  358 bits (919), Expect = 6e-97,   Method: Composition-based stats.
 Identities = 105/305 (34%), Positives = 162/305 (53%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SG A  + L + G     +D        L  +     F  LHG
Sbjct: 5   IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119
             GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK +    G+PV P + + R   + 
Sbjct: 65  RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124

Query: 120 --------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P ++KP + GSS+G+  +  + ++   L    ++ H +++LIE++
Sbjct: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRL--AFQHDEEVLIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L    I  P   FY YE K+ S  + +  PA +       +Q L 
Sbjct: 183 LSGPEFTVAILGEEILPSIRIQ-PSGTFYDYEAKFLSDETQYFCPAGLEASQEANLQALV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A   +GC+G  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 242 LKAWTTLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300

Query: 292 MVEDA 296
           ++E A
Sbjct: 301 ILELA 305


>gi|332160414|ref|YP_004296991.1| D-alanine--D-alanine ligase [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|318607125|emb|CBY28623.1| D-alanine--D-alanine ligase B [Yersinia enterocolitica subsp.
           palearctica Y11]
 gi|325664644|gb|ADZ41288.1| D-alanine--D-alanine ligase [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|330859328|emb|CBX69675.1| D-alanine--D-alanine ligase [Yersinia enterocolitica W22703]
          Length = 306

 Score =  358 bits (919), Expect = 6e-97,   Method: Composition-based stats.
 Identities = 106/305 (34%), Positives = 167/305 (54%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL SG+A  + L +AG     ID        L     D  F  LHG
Sbjct: 5   VAVLLGGTSAEREVSLLSGEAVLAGLREAGIDAHGIDTKDFPVTQLKEQGFDKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LE L++PYT SG++ASAL+MDK+R+K V  + G+P+ P + +NR   ++
Sbjct: 65  RGGEDGTLQGVLEFLQLPYTGSGVMASALTMDKLRTKLVWQASGLPISPYVALNRQQFET 124

Query: 121 Q---------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P ++KP   GSS+G+  + +   +   L++  ++ H   +LIE++
Sbjct: 125 LSSEELAACVAKLGLPLIVKPSHEGSSVGMSKVDQANQLHSALVE--AFRHDTDVLIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L    I  P   FY YE KY S  + +  P+ +  ++ +++  L+
Sbjct: 183 LSGPEFTVAILGNDVLPSIRIQAP-GVFYDYEAKYLSDETQYFCPSGLSSELEQQLAALS 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A+QA+GC G  R D + D      + LE+N  PGMT  S+ P  A   G SF +L+  
Sbjct: 242 LQAYQALGCSGWGRVDVMQD-SDGCFYLLEVNTSPGMTSHSLVPMAARQHGLSFSQLVAR 300

Query: 292 MVEDA 296
           ++  A
Sbjct: 301 ILTLA 305


>gi|99080527|ref|YP_612681.1| D-alanine--D-alanine ligase [Ruegeria sp. TM1040]
 gi|122984380|sp|Q1GIU7|DDL_SILST RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|99036807|gb|ABF63419.1| D-alanine--D-alanine ligase [Ruegeria sp. TM1040]
          Length = 306

 Score =  358 bits (919), Expect = 6e-97,   Method: Composition-based stats.
 Identities = 143/302 (47%), Positives = 196/302 (64%), Gaps = 8/302 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +A+LMGG S+EREVSLS+G+ CA AL   G++V ++D    +   L  +KPD+AFN LHG
Sbjct: 11  VAMLMGGPSAEREVSLSTGRECARALRGQGYEVVEVDAGPDLVAQLNDIKPDVAFNALHG 70

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG VQ +LE L IPYTHSG+LASAL+MDK RSK    + G+PV  S++  +  + +
Sbjct: 71  RWGEDGCVQGLLEWLRIPYTHSGVLASALAMDKERSKAAYRTAGLPVVDSVIAAKADVMA 130

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +H+I+PPYV+KP   GSS+GI ++ +  + P  L +        Q+++E Y  G E+T  
Sbjct: 131 RHVIAPPYVVKPNNEGSSVGIYIVHEATNSPPQLSEE----MPAQVMVEAYAPGREMTVT 186

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           VMGD +L VT+I      +Y YE KY++  S HVLPA+IP +I       A  AHQ +GC
Sbjct: 187 VMGDRALCVTDILT--DGWYDYEAKYATGGSRHVLPAEIPDEIADLCHDYALRAHQVLGC 244

Query: 241 RGISRSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           RGISR+DF +D       +  LE N QPGMTP S+ PE A + G +F +L  W+VEDASC
Sbjct: 245 RGISRTDFRWDEARGADGLVLLETNTQPGMTPTSLSPEQAEHVGLTFGQLCAWLVEDASC 304

Query: 299 LR 300
            R
Sbjct: 305 ER 306


>gi|296101255|ref|YP_003611401.1| D-alanine--D-alanine ligase [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295055714|gb|ADF60452.1| D-alanine--D-alanine ligase [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
          Length = 306

 Score =  358 bits (919), Expect = 7e-97,   Method: Composition-based stats.
 Identities = 106/305 (34%), Positives = 163/305 (53%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL+SG A  + L +AG     +D        L  +  D  F  LHG
Sbjct: 5   IAVLSGGTSAEREVSLNSGAAVLAGLREAGVNAHLVDPKEVDVTQLKAMGFDKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119
             GEDG +Q +L+L+ +PYT SG++ASA+SMDK+RSK +    G+PV P + + R   + 
Sbjct: 65  RGGEDGTLQGLLDLIGMPYTGSGVMASAISMDKLRSKLLWQGAGLPVAPWVALTRREFEM 124

Query: 120 --------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P ++KP + GSS+G+  + K   +   L    ++ H +++LIE++
Sbjct: 125 GLQDSVNARIAELGLPVIVKPSREGSSVGMSKVDKADDLSSALAV--AFQHDEEVLIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L    I  P   FY YE KY S  + +  PA +  +   ++Q L 
Sbjct: 183 LSGPEFTVAMLGEEILPSIRIQ-PAGVFYDYEAKYLSDETQYFCPAGLEAEREADLQSLV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A   +GC G  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 242 LKAWHVLGCSGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300

Query: 292 MVEDA 296
           +++ A
Sbjct: 301 ILDQA 305


>gi|260892987|ref|YP_003239084.1| D-alanine/D-alanine ligase [Ammonifex degensii KC4]
 gi|260865128|gb|ACX52234.1| D-alanine/D-alanine ligase [Ammonifex degensii KC4]
          Length = 308

 Score =  358 bits (919), Expect = 7e-97,   Method: Composition-based stats.
 Identities = 111/305 (36%), Positives = 183/305 (60%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL SG+A   AL++ G++  +IDV   + L L+ +KPD+ F  LHG
Sbjct: 3   VAVLCGGNSAEREVSLRSGEAVYRALQERGWEAVKIDVGPDIALRLSEVKPDVVFLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LE++ +PYT  GILASAL+M+K+ +K+ + S  +P    I +++     
Sbjct: 63  KGGEDGSIQGLLEVMGLPYTGPGILASALAMNKIATKRYLRSASLPTPDFITLDKEETHD 122

Query: 121 Q------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
           +           P V+K    GSSLG+ ++++++ +   L  + ++ +   +L+E++++G
Sbjct: 123 EWLQRVKEFRPFPVVVKAPTQGSSLGMNIVRREEELLPAL--AEAFRYDPVVLVEEFIEG 180

Query: 175 IELTCGVMGDA---SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           +E+T  V+G+     L + EI V     Y YE KY+   S H++P ++P    ++V+ LA
Sbjct: 181 VEVTAAVLGNRKPVVLPLIEI-VADKGVYDYEAKYTPGKSQHIIPPRLPEPWQEKVKELA 239

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
              ++ + CRG SR DF+ D      + LE+N  PG+T VS+FP+ A  AG SF EL+  
Sbjct: 240 LATYRWLDCRGFSRIDFMVDHKGN-PYILEVNTIPGLTEVSLFPDAARAAGISFGELVER 298

Query: 292 MVEDA 296
           ++  A
Sbjct: 299 LIYLA 303


>gi|300938487|ref|ZP_07153227.1| D-ala D-ala ligase [Escherichia coli MS 21-1]
 gi|300456556|gb|EFK20049.1| D-ala D-ala ligase [Escherichia coli MS 21-1]
          Length = 306

 Score =  358 bits (919), Expect = 7e-97,   Method: Composition-based stats.
 Identities = 105/305 (34%), Positives = 161/305 (52%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SG A  + L +       +D        L  +     F  LHG
Sbjct: 5   IAVLLGGTSAEREVSLNSGAAVLAGLREGCIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119
             GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK +    G+PV P + + R   + 
Sbjct: 65  RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124

Query: 120 --------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P ++KP + GSS+G+  +  + ++   L    ++ H +++LIE++
Sbjct: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRL--AFQHDEEVLIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L    I  P   FY YE KY S  + +  PA +       +Q L 
Sbjct: 183 LSGPEFTVAILGEEILPSIRIQ-PSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A   +GC+G  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 242 LKAWTTLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300

Query: 292 MVEDA 296
           ++E A
Sbjct: 301 ILELA 305


>gi|16759125|ref|NP_454742.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|29140675|ref|NP_804017.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|56412402|ref|YP_149477.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|167550675|ref|ZP_02344432.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|168230409|ref|ZP_02655467.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|168243455|ref|ZP_02668387.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|168262185|ref|ZP_02684158.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|194451328|ref|YP_002044100.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|194471648|ref|ZP_03077632.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|197361338|ref|YP_002140973.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|213052846|ref|ZP_03345724.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Typhi str. E00-7866]
 gi|213426153|ref|ZP_03358903.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Typhi str. E02-1180]
 gi|213585685|ref|ZP_03367511.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-0664]
 gi|213621330|ref|ZP_03374113.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
 gi|213646585|ref|ZP_03376638.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Typhi str. J185]
 gi|213855584|ref|ZP_03383824.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Typhi str. M223]
 gi|238911187|ref|ZP_04655024.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Tennessee str. CDC07-0191]
 gi|289823732|ref|ZP_06543344.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-3139]
 gi|22095576|sp|Q8Z9G7|DDLB_SALTI RecName: Full=D-alanine--D-alanine ligase B; AltName:
           Full=D-Ala-D-Ala ligase B; AltName: Full=D-alanylalanine
           synthetase B
 gi|81359629|sp|Q5PDC6|DDL_SALPA RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|229486018|sp|B5BLC4|DDL_SALPK RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|25293550|pir||AG0518 D-alanine,D-alanine ligase B [imported] - Salmonella enterica
           subsp. enterica serovar Typhi (strain CT18)
 gi|16501415|emb|CAD01287.1| D-alanine:D-alanine ligase B [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29136299|gb|AAO67866.1| D-alanine:D-alanine ligase B [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|56126659|gb|AAV76165.1| D-alanine:D-alanine ligase B [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|194409632|gb|ACF69851.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|194458012|gb|EDX46851.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|197092813|emb|CAR58239.1| D-alanine:D-alanine ligase B [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|205324448|gb|EDZ12287.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|205335047|gb|EDZ21811.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|205337394|gb|EDZ24158.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|205348781|gb|EDZ35412.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
          Length = 306

 Score =  358 bits (919), Expect = 7e-97,   Method: Composition-based stats.
 Identities = 109/305 (35%), Positives = 165/305 (54%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+ER+VSL+SG A  + L + G     +D        L  +     F  LHG
Sbjct: 5   IAVLLGGTSAERDVSLNSGAAVLAGLREGGIDAHPVDPQEVDVAQLKAMGFQKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LELL +PYT SG++ASALSMDK+RSK +    G+PV P + + R   + 
Sbjct: 65  RGGEDGTLQGMLELLGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124

Query: 121 ---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P ++KP + GSS+G+  + ++ ++   L  S ++ H D++LIE++
Sbjct: 125 GLSEEQKARISALGLPLIVKPSREGSSVGMTKVVEENALQGAL--SLAFQHDDEILIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L    I  P   FY YE KY S  + +  PA +       +Q L 
Sbjct: 183 LCGPEFTVAIVGEEILPSIRIQ-PAGTFYDYEAKYLSDETQYFCPAGLEASQEAALQSLV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A +A+GC G  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 242 LQAWKALGCTGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300

Query: 292 MVEDA 296
           ++E A
Sbjct: 301 ILELA 305


>gi|157369008|ref|YP_001476997.1| D-alanine--D-alanine ligase [Serratia proteamaculans 568]
 gi|157320772|gb|ABV39869.1| D-alanine--D-alanine ligase [Serratia proteamaculans 568]
          Length = 306

 Score =  357 bits (918), Expect = 8e-97,   Method: Composition-based stats.
 Identities = 108/305 (35%), Positives = 161/305 (52%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL SG A  + L +AG     ID+       L        F  LHG
Sbjct: 5   VAVLLGGTSAEREVSLQSGAAVLAGLREAGIDAHGIDIRDFPVTQLKEHGFTKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LE LE+PYT SG++ASAL+MDK R+K V  S G+PV P + +NR     
Sbjct: 65  RGGEDGTLQGMLEFLELPYTGSGVMASALTMDKWRTKMVWQSMGLPVAPYVALNRKQYAG 124

Query: 121 QHL---------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P ++KP + GSS+G+  + +  ++   L     + H D +L+E++
Sbjct: 125 AEKATLIARVEALGLPLIVKPSREGSSVGMSKVTERDALEAAL--EEGFRHDDDVLVEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++GD  L    I  P   FY Y+ KY S ++ +  P+ +      E+  LA
Sbjct: 183 LSGPEYTVAMLGDQVLPSIRIQ-PAGVFYDYQAKYISDDTQYFCPSGLGAQQEAEMAALA 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A++ + C G  R D + D      + LE+N  PGMT  S+ P  A  +G SF +L+  
Sbjct: 242 LRAYRGLDCSGWGRVDVMQD-SDGSFYLLEVNTSPGMTSHSLVPMAARQSGLSFSQLVAR 300

Query: 292 MVEDA 296
           ++E A
Sbjct: 301 ILELA 305


>gi|163794530|ref|ZP_02188501.1| D-alanylalanine synthetase [alpha proteobacterium BAL199]
 gi|159180254|gb|EDP64777.1| D-alanylalanine synthetase [alpha proteobacterium BAL199]
          Length = 306

 Score =  357 bits (918), Expect = 8e-97,   Method: Composition-based stats.
 Identities = 142/302 (47%), Positives = 195/302 (64%), Gaps = 7/302 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG S+ER VSLSSG+ CA AL  AG+KVS+IDVDR +   L  +KPD+ FN LHG
Sbjct: 8   VAVLMGGWSAERAVSLSSGRECAKALRQAGWKVSEIDVDRGIARKLESVKPDVVFNALHG 67

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +L +L IPYTHSG+ ASA++MDK  +K V +  G+      +V     D 
Sbjct: 68  PVGEDGNIQGVLNILGIPYTHSGVRASAVAMDKPTAKDVFARHGLRCPEGRVVTLSDFDK 127

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              ++PPYVIKP+  GSS+G+ ++++  +       +  W  GD +L+E+YV G ELT  
Sbjct: 128 GEPMTPPYVIKPIDQGSSVGVHIVREGDNYRP---TAEDWPFGDAVLVERYVPGRELTVA 184

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V    +++VTEI      FY Y+ KY+   S H+LPA +P +I ++   +A  AH+AIGC
Sbjct: 185 VWDGEAMEVTEI-TSSHGFYDYDAKYAEGGSIHMLPAPVPDEIRRQAMDIAARAHRAIGC 243

Query: 241 RGISRSDFLFDPLSRKV---FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           RG+SR+DF +D  + +    + LEIN QPGMTP S+ PE AA+ G SF EL+  MVEDA 
Sbjct: 244 RGVSRADFRYDDTAGEPGDLYLLEINTQPGMTPTSLVPEQAAHLGISFPELVSRMVEDAR 303

Query: 298 CL 299
           C 
Sbjct: 304 CD 305


>gi|103487362|ref|YP_616923.1| D-alanine--D-alanine ligase [Sphingopyxis alaskensis RB2256]
 gi|123379717|sp|Q1GRY2|DDL_SPHAL RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|98977439|gb|ABF53590.1| D-alanine--D-alanine ligase [Sphingopyxis alaskensis RB2256]
          Length = 308

 Score =  357 bits (918), Expect = 8e-97,   Method: Composition-based stats.
 Identities = 135/302 (44%), Positives = 193/302 (63%), Gaps = 5/302 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG S+EREVSL SGK  A ALE  G KV++ID+DR V L LA  KPD+ FN LHG
Sbjct: 8   VAVLMGGWSAEREVSLMSGKGVADALESRGHKVTRIDMDRDVALRLAEAKPDVVFNALHG 67

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG VQ +L+L+   YTHSG++ S +++DK  +KQ +   G+P+    +V+  ++ S
Sbjct: 68  VPGEDGTVQGMLDLMGFRYTHSGLVTSVIAIDKELTKQALVPHGIPMPTGTMVDSESLFS 127

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSI--PLDLLQSSSWNHGDQLLIEQYVDGIELT 178
              +  PYV+KP+  GSS+G+ +++ D +   P+       W   D+LL E ++ G ELT
Sbjct: 128 VDPLPRPYVLKPVNEGSSVGVAIVRDDSNYGNPISRDALGPWQQFDRLLAEPFIKGRELT 187

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             V+GD +L VTE+ V KS FY Y+ KY+   + HV PA +P D+ + ++ LA  AH+ +
Sbjct: 188 VAVLGDTALAVTELRV-KSGFYDYDAKYTDGLTEHVCPADVPDDVAQRMKDLALQAHRLL 246

Query: 239 GCRGISRSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           GC+G SRSDF +D       +F LE+N QPGMTP+S+ PE A   G  + EL+  +VE+A
Sbjct: 247 GCKGASRSDFRWDDEHGLAGIFLLEVNTQPGMTPLSLVPEQARAVGMDYAELVERIVEEA 306

Query: 297 SC 298
             
Sbjct: 307 LT 308


>gi|170718786|ref|YP_001783968.1| D-alanine--D-alanine ligase [Haemophilus somnus 2336]
 gi|190359138|sp|B0US69|DDL_HAES2 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|168826915|gb|ACA32286.1| D-alanine--D-alanine ligase [Haemophilus somnus 2336]
          Length = 308

 Score =  357 bits (918), Expect = 8e-97,   Method: Composition-based stats.
 Identities = 111/300 (37%), Positives = 174/300 (58%), Gaps = 10/300 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SG A  +AL + GF    ID       +L     D  FN+LHG
Sbjct: 10  IAVLLGGTSAEREVSLNSGNAVLTALRNQGFDAHPIDPKEYPVAMLKEQGFDRVFNILHG 69

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LE + +PYT  G++ASAL+MDKMR+K +  + G+PV    +V R +   
Sbjct: 70  RGGEDGTIQGLLEQIGLPYTGCGVMASALTMDKMRTKMLWKAFGLPVADMEVVTRTSFSQ 129

Query: 121 Q------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
                    +  P ++KP   GSS+G+  +     +   +    +  + + +LIE+++ G
Sbjct: 130 LNPQVVVEKLGLPLMVKPSLEGSSVGLTKVNAIDDLKSAV--EFALQYDETVLIEEWLSG 187

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
            ELT  V+G+  L   +I VP+ +FY YE KY + N+ +  P+ +  +  +E+++L   A
Sbjct: 188 DELTVPVLGNEVLPSIKI-VPQGEFYDYEAKYIADNTQYFCPSGLTEEREQELRQLVKQA 246

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           +  +GCRG SR D + D    K   +E+N  PGMT  S+FP+ AA  GYSF +L++ ++E
Sbjct: 247 YDVVGCRGWSRIDVMLDG-EGKFRLVEVNTNPGMTSHSLFPKSAATVGYSFEQLVVKILE 305


>gi|291615171|ref|YP_003525328.1| D-alanine/D-alanine ligase [Sideroxydans lithotrophicus ES-1]
 gi|291585283|gb|ADE12941.1| D-alanine/D-alanine ligase [Sideroxydans lithotrophicus ES-1]
          Length = 309

 Score =  357 bits (918), Expect = 9e-97,   Method: Composition-based stats.
 Identities = 109/298 (36%), Positives = 164/298 (55%), Gaps = 6/298 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL SG A  +AL  +G      D  +     L   K D  F +LHG
Sbjct: 12  VAVLFGGRSAEREVSLKSGAAVLAALLKSGVDAHAFDPAQRDLSELKKEKFDRVFIILHG 71

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--FTM 118
            +GEDG VQ  LEL++IPYT SG++ASA++MDK R+K V  + G+P+     +       
Sbjct: 72  RYGEDGTVQGALELMDIPYTGSGVMASAIAMDKWRTKLVWQAAGLPIPEYEALTAPSDWN 131

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                +  P  +KP   GSS+G+  +K    +P+   +++   +   ++ E ++ G E T
Sbjct: 132 AVADHLDLPLFVKPSSEGSSVGVTKVKTVDELPIAYAEAA--KYDKVVIAESFMSGGEYT 189

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             ++   +L V +I  P ++FY YE KY   ++ ++ P  + ++   E+Q LA LA Q I
Sbjct: 190 ATILNGRALPVIKIE-PANEFYDYEAKYLRDDTRYLCPCGLSVEQEAEMQHLALLAFQLI 248

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           GC+G  R DF       K + LEIN  PGMT  S+ P  A  AG SF +L++ ++E A
Sbjct: 249 GCQGWGRVDF-LRGDDGKFYLLEINTAPGMTDHSLVPMAARQAGISFEQLVVQILEGA 305


>gi|149202200|ref|ZP_01879173.1| D-alanine--D-alanine ligase [Roseovarius sp. TM1035]
 gi|149144298|gb|EDM32329.1| D-alanine--D-alanine ligase [Roseovarius sp. TM1035]
          Length = 296

 Score =  357 bits (918), Expect = 9e-97,   Method: Composition-based stats.
 Identities = 140/301 (46%), Positives = 192/301 (63%), Gaps = 8/301 (2%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGN 61
           AV+MGG S+ER+VSLSSG+ CA AL +AGF+V ++D    +   L  +KPD+ FN LHG 
Sbjct: 2   AVIMGGPSAERDVSLSSGRECAVALREAGFEVVEVDAAADLCTCLQAIKPDVVFNALHGR 61

Query: 62  FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ 121
           +GEDG VQ +LE L +PYTHSG+L+SAL+MDK R+K    + G+PV  S+L  R  + ++
Sbjct: 62  WGEDGCVQGMLEWLRLPYTHSGVLSSALAMDKERTKAAYRAAGLPVVESVLARRDEVRTR 121

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
           H++ PPYV+KP   GSS+GI +++   + P  L      +  + +++E Y  G ELT  V
Sbjct: 122 HVMPPPYVVKPCNEGSSVGIYLVEAGANNPPALSD----DMPEVVMVEAYAPGRELTTTV 177

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241
           MGD +L VT+I      +Y Y+ KY    S HV+PA+IP +I+      A  AH  +GCR
Sbjct: 178 MGDRALTVTDILT--DGWYDYDAKYKPGGSRHVVPAEIPQEIFDACLDYALRAHAVLGCR 235

Query: 242 GISRSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
           G+SR+DF +D       +  LE N QPGMTP S+ PE A   G +F EL  WMVEDASC 
Sbjct: 236 GVSRTDFRWDAARGRDGLILLETNTQPGMTPTSLAPEQAQAVGITFPELCRWMVEDASCN 295

Query: 300 R 300
           R
Sbjct: 296 R 296


>gi|283783879|ref|YP_003363744.1| D-alanine--D-alanine ligase B [Citrobacter rodentium ICC168]
 gi|282947333|emb|CBG86878.1| D-alanine--D-alanine ligase B [Citrobacter rodentium ICC168]
          Length = 306

 Score =  357 bits (918), Expect = 9e-97,   Method: Composition-based stats.
 Identities = 103/305 (33%), Positives = 160/305 (52%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL+SG A  + L + G     +D        L  +     F  LHG
Sbjct: 5   IAVLFGGTSAEREVSLNSGAAVLAGLREGGVDAHPVDPKEVDVTQLKAMGFQKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LEL+ +PYT SG++ASA+SMDK+RSK +    G+PV P + + R   + 
Sbjct: 65  RGGEDGTLQGLLELIGLPYTGSGVMASAISMDKLRSKLLWQGAGLPVAPWVALTRAQFEK 124

Query: 121 ---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P ++KP + GSS+G+  + +  ++   L    ++ H +++LIE++
Sbjct: 125 GLSEELVTQISALGLPLIVKPSREGSSVGMSKVAEYDALQSALAL--AFQHDEEVLIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L    I  P   FY YE KY S  + +  PA +       ++ L 
Sbjct: 183 LSGPEFTVAILGEEILPTIRIQ-PAGTFYDYEAKYLSDETQYFCPAGLETAQEALLRDLV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A   +GC+G  R D + D    + + LE N  PGMT  S+ P  A   G SF +L++ 
Sbjct: 242 RKAWSTLGCKGWGRIDAMLD-SDGQFYLLEANTSPGMTSHSLVPMAAREKGLSFSQLVVR 300

Query: 292 MVEDA 296
           ++E A
Sbjct: 301 ILELA 305


>gi|200387797|ref|ZP_03214409.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|199604895|gb|EDZ03440.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
          Length = 306

 Score =  357 bits (918), Expect = 9e-97,   Method: Composition-based stats.
 Identities = 109/305 (35%), Positives = 165/305 (54%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+ER+VSL+SG A  + L + G     +D        L  +     F  LHG
Sbjct: 5   IAVLLGGTSAERDVSLNSGAAVLAGLREGGINAHPVDPQEVDVAQLKAMGFQKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LELL +PYT SG++ASALSMDK+RSK +    G+PV P + + R   + 
Sbjct: 65  RGGEDGTLQGMLELLGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124

Query: 121 ---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P ++KP + GSS+G+  + ++ ++   L  S ++ H D++LIE++
Sbjct: 125 GLSEEQKARISALGLPLIVKPSREGSSVGMTKVVEENALQGAL--SLAFQHDDEILIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L    I  P   FY YE KY S  + +  PA +       +Q L 
Sbjct: 183 LCGPEFTVAIVGEEILPSIRIQ-PAGTFYDYEAKYLSDETQYFCPAGLEASQEAALQSLV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A +A+GC G  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 242 LQAWKALGCTGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300

Query: 292 MVEDA 296
           ++E A
Sbjct: 301 ILELA 305


>gi|126741305|ref|ZP_01756983.1| D-alanine--D-alanine ligase [Roseobacter sp. SK209-2-6]
 gi|126717623|gb|EBA14347.1| D-alanine--D-alanine ligase [Roseobacter sp. SK209-2-6]
          Length = 296

 Score =  357 bits (917), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 144/301 (47%), Positives = 193/301 (64%), Gaps = 8/301 (2%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGN 61
           AVLMGG S+EREVSLSSG+ CA+AL   G++V ++D    +   L  + PD+ FN LHG 
Sbjct: 2   AVLMGGPSAEREVSLSSGRECAAALRGEGYEVVELDAGPDLAERLKEISPDVVFNALHGR 61

Query: 62  FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ 121
           +GEDG VQ +LE + +PYTHSG+LASAL+MDK RSK      G+PV  SIL ++ T+ + 
Sbjct: 62  WGEDGCVQGLLEWMGLPYTHSGVLASALAMDKERSKAAYRVAGLPVTESILADKATVMAA 121

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
           H+I+PPYV+KP   GSS+GI ++ +  + P  L  S      + +++E Y  G ELT  V
Sbjct: 122 HVIAPPYVVKPNNEGSSVGIYIVNEGANTPPQLSDS----MPETVMVEAYAPGRELTTTV 177

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241
           MGD +L VT+I      +Y YE KY+   S H  PAK+P +I +     A  AH+ +GCR
Sbjct: 178 MGDRALGVTDIIT--DGWYDYEAKYAEGGSRHEFPAKVPEEIEELCLAYALKAHEILGCR 235

Query: 242 GISRSDFLFDPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
           G+SR+DF +D    K  +  LE N QPGMTP S+ PE A   G SF +L  WMVEDASC+
Sbjct: 236 GVSRTDFRWDESKGKDGLILLETNTQPGMTPTSLAPEQAEGIGMSFGQLCAWMVEDASCV 295

Query: 300 R 300
           R
Sbjct: 296 R 296


>gi|315633819|ref|ZP_07889108.1| D-alanine-D-alanine ligase B [Aggregatibacter segnis ATCC 33393]
 gi|315477069|gb|EFU67812.1| D-alanine-D-alanine ligase B [Aggregatibacter segnis ATCC 33393]
          Length = 313

 Score =  357 bits (917), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 110/303 (36%), Positives = 171/303 (56%), Gaps = 10/303 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SG A  +AL   G+    ID        L     D  FN+LHG
Sbjct: 14  IAVLLGGTSAEREVSLNSGTAVLNALRKQGYDAHPIDPKEFPVATLKEQGFDRVFNILHG 73

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFT 117
             GEDG +Q +LE + IPYT  G++ SAL+MDKMR+K +  + G+PV    +V   NR  
Sbjct: 74  RGGEDGTMQGLLEQIGIPYTGCGVMTSALTMDKMRTKMLWKAFGLPVAEMEIVTVENRAN 133

Query: 118 MDSQ---HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
           ++ +     +  P ++KP   GSS+G+  +K    +   +  +  ++    +LIE+++ G
Sbjct: 134 LNPESVVKKLGLPLMVKPSLEGSSVGLTKVKAIAELESAVDFALKFDR--TVLIEEWLAG 191

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
            E T  V+ +  L   +I VP+ +FY Y+ KY S N+ +  PA +     +E++ L   A
Sbjct: 192 DEFTVPVLDNEVLPSIKI-VPEGEFYDYDAKYISDNTQYFCPAGLSDKREQELRHLVKQA 250

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           +  +GCRG SR D + D        +E+N  PGMT  S+FP+ AA  GYSF +L+  ++E
Sbjct: 251 YDVVGCRGWSRIDVIADAEGN-FRLVEVNTNPGMTSHSLFPKSAATVGYSFEQLVERILE 309

Query: 295 DAS 297
            ++
Sbjct: 310 LSA 312


>gi|90424792|ref|YP_533162.1| D-alanine--D-alanine ligase [Rhodopseudomonas palustris BisB18]
 gi|122475818|sp|Q211U3|DDL_RHOPB RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|90106806|gb|ABD88843.1| D-alanine--D-alanine ligase [Rhodopseudomonas palustris BisB18]
          Length = 308

 Score =  357 bits (917), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 155/303 (51%), Positives = 209/303 (68%), Gaps = 4/303 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG SSEREVSL SGKACA ALE  G++V+++DV R++G VL  LKPD+A  +LHG
Sbjct: 7   VAVLLGGWSSEREVSLRSGKACADALERCGYQVTRVDVQRNIGTVLDQLKPDVALVMLHG 66

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LE L IPY+HSG+LASAL+M K  +K V+++ GVPV   + ++R  +  
Sbjct: 67  RPGEDGTIQGVLETLGIPYSHSGVLASALAMQKDLAKTVMATAGVPVAEGLTLSRAEVAK 126

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +H+++PPYVIKP+  GSS+G+ ++ +    P   L    W HG+QLL+E+YV G ELTC 
Sbjct: 127 RHVMAPPYVIKPVADGSSVGVFMVTEAHEHPPQELFRDDWPHGEQLLVEKYVAGKELTCA 186

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V+      V EI V  + FY YE KYS   S H+LPA +   +Y+EV+RL   AH A+GC
Sbjct: 187 VVKGEPTGVIEI-VQTNKFYDYEAKYSPGGSNHILPASLLPFVYQEVRRLTLAAHVALGC 245

Query: 241 RGISRSDFLFD---PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           RG+SR+DF FD     +  +  LE+N QPGMT  S+ PE+AA AG +F EL+ WMVEDAS
Sbjct: 246 RGVSRADFRFDDRIEGTAGLICLEVNTQPGMTETSLVPELAADAGITFDELVQWMVEDAS 305

Query: 298 CLR 300
             R
Sbjct: 306 LGR 308


>gi|197247549|ref|YP_002145116.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|197211252|gb|ACH48649.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
          Length = 306

 Score =  357 bits (917), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 109/305 (35%), Positives = 165/305 (54%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+ER+VSL+SG A  + L + G     +D        L  +     F  LHG
Sbjct: 5   IAVLLGGTSAERDVSLNSGAAVLAGLREGGIDAYPVDPQEVDVAQLKAMGFQKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LELL +PYT SG++ASALSMDK+RSK +    G+PV P + + R   + 
Sbjct: 65  RGGEDGTLQGMLELLGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124

Query: 121 ---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P ++KP + GSS+G+  + ++ ++   L  S ++ H D++LIE++
Sbjct: 125 GLSEEQKARISALGLPLIVKPSREGSSVGMTKVVEENALQGAL--SLAFQHDDEILIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L    I  P   FY YE KY S  + +  PA +       +Q L 
Sbjct: 183 LCGPEFTVAIVGEEILPSIRIQ-PAGTFYDYEAKYLSDETQYFCPAGLEASQEAALQSLV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A +A+GC G  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 242 LQAWKALGCTGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300

Query: 292 MVEDA 296
           ++E A
Sbjct: 301 ILELA 305


>gi|113460506|ref|YP_718570.1| D-alanine--D-alanine ligase [Haemophilus somnus 129PT]
 gi|123131919|sp|Q0I1D1|DDL_HAES1 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|112822549|gb|ABI24638.1| D-alanine--D-alanine ligase [Haemophilus somnus 129PT]
          Length = 308

 Score =  357 bits (917), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 110/300 (36%), Positives = 174/300 (58%), Gaps = 10/300 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SG A  +AL + GF    ID       +L     D  FN+LHG
Sbjct: 10  IAVLLGGTSAEREVSLNSGNAVLTALRNQGFDAHPIDPKEYPVAMLKEQGFDRVFNILHG 69

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LE + +PYT  G++ASAL+MDKMR+K +  + G+PV    +V R +   
Sbjct: 70  RGGEDGTIQGLLEQIGLPYTGCGVMASALTMDKMRTKMLWKAFGLPVADMEVVTRTSFSQ 129

Query: 121 Q------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
                    +  P ++KP   GSS+G+  +     +   +    +  + + +LIE+++ G
Sbjct: 130 LNPQVVVEKLGLPLMVKPSLEGSSVGLTKVNAIDDLKSAV--EFALQYDETVLIEEWLSG 187

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
            ELT  ++G+  L   +I VP+ +FY YE KY + N+ +  P+ +  +  +E+++L   A
Sbjct: 188 DELTVPILGNEVLPSIKI-VPQGEFYDYEAKYIADNTQYFCPSGLTEEREQELRQLVKQA 246

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           +  +GCRG SR D + D    K   +E+N  PGMT  S+FP+ AA  GYSF +L++ ++E
Sbjct: 247 YDVVGCRGWSRIDVMLDG-EGKFRLVEVNTNPGMTSHSLFPKSAATVGYSFEQLVVKILE 305


>gi|332095383|gb|EGJ00406.1| D-alanine--D-alanine ligase B [Shigella boydii 5216-82]
          Length = 306

 Score =  357 bits (917), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 104/305 (34%), Positives = 161/305 (52%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SG    + L + G     +D        L  +     F  LHG
Sbjct: 5   IAVLLGGTSAEREVSLNSGAVVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119
             GEDG +Q +LEL+ +PYT SG++ASALS+DK+RSK +    G+PV P + + R   + 
Sbjct: 65  RGGEDGTLQGMLELMGLPYTGSGVMASALSIDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124

Query: 120 --------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P ++KP + GSS+G+  +  + ++   L    ++ H +++LIE++
Sbjct: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMTKVVAENALQDALRL--AFQHDEEVLIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L    I  P   FY YE KY S  + +  PA +       +Q L 
Sbjct: 183 LSGPEFTVAILGEEILPSIRIQ-PAGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A   +GC+G  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 242 LKAWTTLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300

Query: 292 MVEDA 296
           ++E A
Sbjct: 301 ILELA 305


>gi|62178697|ref|YP_215114.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|62126330|gb|AAX64033.1| D-alanine-D-alanine ligase B, affects cell division [Salmonella
           enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
 gi|322713150|gb|EFZ04721.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
          Length = 306

 Score =  357 bits (917), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 109/305 (35%), Positives = 165/305 (54%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+ER+VSL+SG A  + L + G     +D        L  +     F  LHG
Sbjct: 5   IAVLLGGTSAERDVSLNSGSAVLAGLREGGIDAHPVDPQEVDVAQLKAMGFQKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LELL +PYT SG++ASALSMDK+RSK +    G+PV P + + R   + 
Sbjct: 65  RGGEDGTLQGMLELLGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124

Query: 121 ---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P ++KP + GSS+G+  + ++ ++   L  S ++ H D++LIE++
Sbjct: 125 GLSEEQKARISALGLPLIVKPSREGSSVGMTKVVEENALQGAL--SLAFQHDDEILIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L    I  P   FY YE KY S  + +  PA +       +Q L 
Sbjct: 183 LCGPEFTVAIVGEEILPSIRIQ-PAGTFYDYEAKYLSDETQYFCPAGLEASQEAALQSLV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A +A+GC G  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 242 LQAWKALGCTGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300

Query: 292 MVEDA 296
           ++E A
Sbjct: 301 ILELA 305


>gi|123441034|ref|YP_001005023.1| D-alanine--D-alanine ligase [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122087995|emb|CAL10783.1| D-alanine--D-alanine ligase B [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 306

 Score =  357 bits (916), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 107/305 (35%), Positives = 168/305 (55%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL SG+A  + L +AG     ID        L     D  F  LHG
Sbjct: 5   VAVLLGGASAEREVSLLSGEAVLAGLREAGIDAHGIDTKDFPVTQLKEQGFDKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LE L++PYT SG++ASAL+MDK+R+K V  + G+P+ P I +NR   ++
Sbjct: 65  RGGEDGTLQGVLEFLQLPYTGSGVMASALTMDKLRTKLVWQASGLPISPYIALNRQQFET 124

Query: 121 Q---------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P ++KP   GSS+G+  + +   +   L++  ++ H   +LIE++
Sbjct: 125 LSSEELAACVAKLGLPLIVKPSHEGSSVGMSKVDQANQLHSALVE--AFRHDTDVLIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L    I  P   FY YE KY S  + +  P+ +  ++ +++  L+
Sbjct: 183 LSGPEFTVAILGNDVLPSIRIQAP-GVFYDYEAKYLSDETQYFCPSGLSAELEQQLAALS 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A+QA+GC G  R D + D    + + LE+N  PGMT  S+ P  A   G SF +L+  
Sbjct: 242 LQAYQALGCSGWGRVDVMQD-SDGRFYLLEVNTSPGMTSHSLVPMAARQHGLSFSQLVAR 300

Query: 292 MVEDA 296
           ++  A
Sbjct: 301 ILTLA 305


>gi|293391360|ref|ZP_06635694.1| D-alanine--D-alanine ligase B [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290951894|gb|EFE02013.1| D-alanine--D-alanine ligase B [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 309

 Score =  357 bits (916), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 111/303 (36%), Positives = 174/303 (57%), Gaps = 10/303 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SG+A  +AL   G+    ID        L     D  FN+LHG
Sbjct: 10  IAVLLGGTSAEREVSLNSGEAVLNALRKQGYDAHPIDPKIFPVATLKEQGFDRVFNILHG 69

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFT 117
             GEDG +Q +LE + +PYT  G++ SAL+MDKMR+K +  + G+PV    +V   NR  
Sbjct: 70  RGGEDGTMQGLLEQIGVPYTGCGVMTSALTMDKMRTKMLWKAFGLPVAEMEIVTTENRVN 129

Query: 118 MDSQ---HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
           ++ +     +  P ++KP   GSS+G+  +K    +   +  +  +   + +LIE+++ G
Sbjct: 130 LNPESVVKKLGLPLMVKPSLEGSSVGLTKVKSVDELESAVDFALKF--DNTVLIEEWLAG 187

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
            E T  V+ +  L   +I VP+ +FY Y+ KY S N+ +  PA +  +  +E+ RL   A
Sbjct: 188 DEFTVPVLDNEVLPSIKI-VPEGEFYDYDAKYISDNTQYFCPAGLSEEREQELHRLVKQA 246

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           +  +GCRG SR D + D    K   +E+N  PGMT  S+FP+ AA  GYSF +L+  ++E
Sbjct: 247 YDVVGCRGWSRIDVMADA-EGKFRLVEVNTNPGMTSHSLFPKSAATVGYSFAQLVEKILE 305

Query: 295 DAS 297
            ++
Sbjct: 306 LSA 308


>gi|323190226|gb|EFZ75502.1| D-alanine--D-alanine ligase B [Escherichia coli RN587/1]
          Length = 306

 Score =  357 bits (916), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 104/305 (34%), Positives = 160/305 (52%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SG A  + L + G     +D        L  +     F  LHG
Sbjct: 5   IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119
             GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK +    G+PV P + + R   + 
Sbjct: 65  RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124

Query: 120 --------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P ++KP + GSS+G+  +  + ++   L    ++ H +++LIE++
Sbjct: 125 GLNDKQLAEISSLGLPVIVKPSREGSSVGMSKVVAENALQDALRL--AFQHDEEVLIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L    I      FY YE KY S  + +  P  +       +Q L 
Sbjct: 183 LSGPEFTVAILGEEILPSIRIQ-SAGTFYDYEAKYLSDETQYFCPVGLEASQEANLQALV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A   +GC+G  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 242 LKAWTTLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300

Query: 292 MVEDA 296
           ++E A
Sbjct: 301 ILELA 305


>gi|194434413|ref|ZP_03066675.1| D-alanine--D-alanine ligase B [Shigella dysenteriae 1012]
 gi|194417329|gb|EDX33436.1| D-alanine--D-alanine ligase B [Shigella dysenteriae 1012]
 gi|332098163|gb|EGJ03136.1| D-alanine--D-alanine ligase B [Shigella dysenteriae 155-74]
          Length = 306

 Score =  357 bits (916), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 105/305 (34%), Positives = 162/305 (53%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SG A  + L + G     +D        L  +     F  LHG
Sbjct: 5   IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119
             GEDG +Q +LEL+ +PYT SG++ASALS+DK+RSK +    G+PV P + + R   + 
Sbjct: 65  RGGEDGTLQGMLELMSLPYTGSGVMASALSIDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124

Query: 120 --------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P ++KP + GSS+G+  +  + ++   L    ++ H +++LIE++
Sbjct: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMTKVVAENALQDALRL--AFQHDEEVLIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L    I  P   FY YE KY S  + +  PA +       +Q L 
Sbjct: 183 LSGPEFTVAILGEEILPSIRIQ-PAGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A   +GC+G  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 242 LKAWMTLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300

Query: 292 MVEDA 296
           ++E A
Sbjct: 301 ILELA 305


>gi|83942737|ref|ZP_00955198.1| D-alanine--D-alanine ligase [Sulfitobacter sp. EE-36]
 gi|83953976|ref|ZP_00962697.1| D-alanine--D-alanine ligase [Sulfitobacter sp. NAS-14.1]
 gi|83841921|gb|EAP81090.1| D-alanine--D-alanine ligase [Sulfitobacter sp. NAS-14.1]
 gi|83846830|gb|EAP84706.1| D-alanine--D-alanine ligase [Sulfitobacter sp. EE-36]
          Length = 292

 Score =  357 bits (916), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 139/298 (46%), Positives = 197/298 (66%), Gaps = 8/298 (2%)

Query: 5   MGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGE 64
           MGG S+EREVSLS+G+ACA+AL D  F+V ++D    +   L   +PD+  N LHG +GE
Sbjct: 1   MGGPSAEREVSLSTGRACAAALRDRSFEVIEVDCGPDLCADLGAAQPDVVLNCLHGRWGE 60

Query: 65  DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI 124
           DG VQ +LE + +PYTHSG+LASAL+MDK RSK+V  + G+PV  S++V+  T+   H++
Sbjct: 61  DGCVQGLLEWMGLPYTHSGVLASALAMDKQRSKEVFRAAGLPVVESLIVSAATVRGSHVM 120

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
            PPYV+KP   GSS+G+ +++ + + P  L  +       ++++E+++ G ELT  VMG+
Sbjct: 121 DPPYVVKPNNEGSSVGVYLVEIENNGPPQLDDA----MPAEVMVEKFIPGRELTTTVMGE 176

Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244
            +L VT+I    + +Y Y+ KY +  STHV+PA IP +I++     A  AH A+GCRG+S
Sbjct: 177 RALTVTDIHT--TGWYDYDAKYKAGGSTHVVPADIPHEIFELCMDYALRAHNALGCRGVS 234

Query: 245 RSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           R+DF +D       +F LE N QPGMTP S+ PE A   G SF EL  WMVEDASC R
Sbjct: 235 RTDFRWDESKGAAGLFLLETNTQPGMTPTSLSPEQAQAVGISFGELCAWMVEDASCNR 292


>gi|259907419|ref|YP_002647775.1| D-alanine--D-alanine ligase [Erwinia pyrifoliae Ep1/96]
 gi|224963041|emb|CAX54524.1| D-alanine-D-alanine ligase [Erwinia pyrifoliae Ep1/96]
 gi|283477252|emb|CAY73165.1| D-alanine-D-alanine ligase [Erwinia pyrifoliae DSM 12163]
          Length = 306

 Score =  356 bits (915), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 114/305 (37%), Positives = 172/305 (56%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+ER+VSL SG A    L++AG     +D+       L     D AF  LHG
Sbjct: 5   VAVLLGGTSAERDVSLLSGAAVLKGLQEAGIDAHAVDIRDFPVTRLNEEGFDKAFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LELL+IPYT SG++ASA++MDK+RSK +   CG+PV P I +NR  MD+
Sbjct: 65  RGGEDGTLQGVLELLDIPYTGSGVMASAITMDKLRSKYLWQGCGLPVSPFIALNRVQMDA 124

Query: 121 ---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                     + +  P  +KP + GSS+GI  + +   +   L++  ++ H D++L+E +
Sbjct: 125 GLDAQMMTSINALGLPLFVKPSREGSSVGISRVNQTSELQAALVE--AFRHDDEVLVEAF 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T GV+G   L    I    S+FY Y+ KY S  + +  P+ +  D   E++ L 
Sbjct: 183 LSGPEYTVGVLGSDILPSIRIQTS-SEFYDYDAKYISDETQYFCPSGLSADQETELRELT 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A +A+GC G  R D +        + LE+N  PGMT  S+ P  A  AG +F +L++ 
Sbjct: 242 IAAWRALGCSGWGRVDVMM-GADGHFYLLEVNTSPGMTSHSLVPMAAKQAGMTFSQLVVR 300

Query: 292 MVEDA 296
           ++E A
Sbjct: 301 ILELA 305


>gi|168234894|ref|ZP_02659952.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|194734683|ref|YP_002113148.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|194710185|gb|ACF89406.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197291932|gb|EDY31282.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|322615951|gb|EFY12868.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315996572]
 gi|322620735|gb|EFY17595.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-1]
 gi|322623913|gb|EFY20750.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-3]
 gi|322627361|gb|EFY24152.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-4]
 gi|322630668|gb|EFY27432.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-1]
 gi|322638112|gb|EFY34813.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-2]
 gi|322640598|gb|EFY37249.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 531954]
 gi|322647739|gb|EFY44224.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Montevideo str. NC_MB110209-0054]
 gi|322648088|gb|EFY44555.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Montevideo str. OH_2009072675]
 gi|322656880|gb|EFY53166.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Montevideo str. CASC_09SCPH15965]
 gi|322657410|gb|EFY53682.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 19N]
 gi|322663729|gb|EFY59929.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 81038-01]
 gi|322666562|gb|EFY62740.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MD_MDA09249507]
 gi|322672279|gb|EFY68391.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 414877]
 gi|322676409|gb|EFY72480.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 366867]
 gi|322679498|gb|EFY75543.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 413180]
 gi|322686173|gb|EFY82157.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 446600]
 gi|323195017|gb|EFZ80203.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609458-1]
 gi|323200074|gb|EFZ85161.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556150-1]
 gi|323201105|gb|EFZ86174.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609460]
 gi|323209502|gb|EFZ94435.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 507440-20]
 gi|323212246|gb|EFZ97070.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556152]
 gi|323216551|gb|EGA01277.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB101509-0077]
 gi|323219900|gb|EGA04378.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB102109-0047]
 gi|323225820|gb|EGA10040.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB110209-0055]
 gi|323228638|gb|EGA12767.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB111609-0052]
 gi|323236748|gb|EGA20824.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009083312]
 gi|323239751|gb|EGA23798.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009085258]
 gi|323242201|gb|EGA26230.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315731156]
 gi|323249375|gb|EGA33291.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2009159199]
 gi|323252292|gb|EGA36143.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008282]
 gi|323256618|gb|EGA40348.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008283]
 gi|323262987|gb|EGA46537.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008284]
 gi|323265472|gb|EGA48968.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008285]
 gi|323271740|gb|EGA55158.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008287]
          Length = 306

 Score =  356 bits (915), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 110/305 (36%), Positives = 166/305 (54%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+ER+VSL+SG A  + L + G     +D        L  +    AF  LHG
Sbjct: 5   IAVLLGGTSAERDVSLNSGAAVLAGLREGGIDAHPVDPQEVDVAQLKAMGFQKAFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LELL +PYT SG++ASALSMDK+RSK +    G+PV P + + R   + 
Sbjct: 65  RGGEDGTLQGMLELLGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124

Query: 121 ---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P ++KP + GSS+G+  + ++ ++   L  S ++ H D++LIE++
Sbjct: 125 GLSEEQKARISALGLPLIVKPSREGSSVGMTKVVEENALQGAL--SLAFQHDDEILIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L    I  P   FY YE KY S  + +  PA +       +Q L 
Sbjct: 183 LCGPEFTVAIVGEEILPSIRIQ-PAGTFYDYEAKYLSDETQYFCPAGLEASQEAALQSLV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A +A+GC G  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 242 LQAWKALGCTGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300

Query: 292 MVEDA 296
           ++E A
Sbjct: 301 ILELA 305


>gi|190359233|sp|Q163J4|DDL_ROSDO RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
          Length = 319

 Score =  356 bits (915), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 138/302 (45%), Positives = 188/302 (62%), Gaps = 8/302 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S EREVSLSSG+ACA+AL D G+ V +ID    +G  L    PD   N LHG
Sbjct: 24  VAVLLGGPSVEREVSLSSGQACAAALRDEGYDVVEIDAGHDLGARLIDAGPDAVLNCLHG 83

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG VQ +LE + +PY+HSG+LASAL+MDK RSK    + G+PV PS++     +  
Sbjct: 84  RWGEDGCVQGLLEWMGVPYSHSGVLASALAMDKQRSKDAFVAAGLPVVPSVIAKAADVRM 143

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            H++ PPYV+KP   GSS+G+ ++ +  + P  L +    +   ++++E +  G ELT  
Sbjct: 144 GHVMQPPYVVKPNNEGSSVGVYLVHEAANGPPQLSE----DMPQEVMVEAFAPGRELTTT 199

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V+GD +L VT+I      +Y Y+ KY    S HV+PA IP DI+      A  AH A+GC
Sbjct: 200 VVGDRALTVTDIVT--DGWYDYDAKYKPGGSHHVVPADIPADIFDLCMDYALRAHHALGC 257

Query: 241 RGISRSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           RG+SR+DF +D       +  LE N QPGMT  S+ PE AA  G +F +L  WMVEDASC
Sbjct: 258 RGVSRTDFRWDETKGAAGLILLETNTQPGMTATSLTPEQAAVTGMTFGKLCAWMVEDASC 317

Query: 299 LR 300
            R
Sbjct: 318 DR 319


>gi|163738723|ref|ZP_02146137.1| D-alanine--D-alanine ligase [Phaeobacter gallaeciensis BS107]
 gi|161388051|gb|EDQ12406.1| D-alanine--D-alanine ligase [Phaeobacter gallaeciensis BS107]
          Length = 292

 Score =  356 bits (915), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 134/298 (44%), Positives = 193/298 (64%), Gaps = 8/298 (2%)

Query: 5   MGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGE 64
           MGG S+EREVSLS+G+ CA+AL D G++V+++D    +   L   +PD+ FN LHG +GE
Sbjct: 1   MGGPSAEREVSLSTGRECATALRDEGYQVTELDAGPDLAARLQADRPDVVFNALHGRWGE 60

Query: 65  DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI 124
           DG VQ +LE L IPYTHSG+LASAL+MDK R+K +  + G+PV  S + ++  + + H++
Sbjct: 61  DGCVQGLLEWLGIPYTHSGVLASALAMDKQRAKSIYRAAGLPVVESGIYSKAEVMAGHVM 120

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
           +PPYV+KP   GSS+G+ ++ +  + P  L Q    +  D++++E +  G ELT  V+GD
Sbjct: 121 APPYVVKPNNEGSSVGVYLVNEVANGPPQLSQ----DMPDEVMVESFAPGRELTTTVLGD 176

Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244
             L VT+I      +Y Y+ KY    S HVLPA +P +I+      A  AH A+GCRGIS
Sbjct: 177 KPLTVTDILT--DGWYDYDAKYKPGGSRHVLPADVPEEIFALCLDYAVKAHDALGCRGIS 234

Query: 245 RSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           R+DF +D       +  LE N QPGMTP S+ PE A ++G +F +L  W+VEDA+C R
Sbjct: 235 RTDFRWDEARGAEGLILLETNTQPGMTPTSLTPEQAEHSGMTFGQLCSWLVEDATCPR 292


>gi|161612474|ref|YP_001586439.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Paratyphi B str. SPB7]
 gi|161361838|gb|ABX65606.1| hypothetical protein SPAB_00164 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 306

 Score =  356 bits (914), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 110/305 (36%), Positives = 166/305 (54%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+ER+VSL+SG A  + L + G     +D        L  +    AF  LHG
Sbjct: 5   IAVLLGGTSAERDVSLNSGAAVLAGLREGGINAHPVDPQEVDVAQLKAMGFQKAFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LELL +PYT SG++ASALSMDK+RSK +    G+PV P + + R   + 
Sbjct: 65  RGGEDGTLQGMLELLGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124

Query: 121 ---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P ++KP + GSS+G+  + ++ ++   L  S ++ H D++LIE++
Sbjct: 125 GLSEEQKARISALGLPLIVKPSREGSSVGMTKVVEENALQGAL--SLAFQHDDEILIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L    I  P   FY YE KY S  + +  PA +       +Q L 
Sbjct: 183 LCGPEFTVAIVGEEILPSIRIQ-PAGTFYDYEAKYLSDETQYFCPAGLEASQEAALQSLV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A +A+GC G  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 242 LQAWKALGCTGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300

Query: 292 MVEDA 296
           ++E A
Sbjct: 301 ILELA 305


>gi|261823014|ref|YP_003261120.1| D-alanine--D-alanine ligase [Pectobacterium wasabiae WPP163]
 gi|261607027|gb|ACX89513.1| D-alanine/D-alanine ligase [Pectobacterium wasabiae WPP163]
          Length = 306

 Score =  356 bits (914), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 110/305 (36%), Positives = 168/305 (55%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL SG+A  + L++AG     +D        L        F  LHG
Sbjct: 5   VAVLLGGTSAEREVSLLSGQAVLAGLKEAGINAHAVDTRDFPVTKLKEDGFTRVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LE LE+PYT SG++ASAL+MDK+R+KQV  + G+PV P + ++R     
Sbjct: 65  RGGEDGTLQGVLEFLELPYTGSGVMASALTMDKLRTKQVWQAVGLPVSPYVALDRRHYSE 124

Query: 121 QHL---------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P ++KP + GSS+G+  +     +P  L    ++ H D +L+E++
Sbjct: 125 TAANELLAKFTHLGLPLIVKPSREGSSVGMSKVNALSELPAAL--EEAFRHDDDVLVEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++GD  L    I  P   FY YE KY S ++ +  P+ +P D  + +  LA
Sbjct: 183 LSGPEYTVAILGDEVLPSIRIQ-PAGTFYDYEAKYLSDDTQYFCPSGLPDDQEQALAVLA 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A++A+ C G  R DF+ D      + LE+N  PGMT  S+ P  A   G +F +L++ 
Sbjct: 242 MAAYRAVDCSGWGRVDFMLD-SDGAFYLLEVNTSPGMTSHSLVPMAARQRGLTFSQLVVK 300

Query: 292 MVEDA 296
           ++E A
Sbjct: 301 ILELA 305


>gi|300021781|ref|YP_003754392.1| D-alanine/D-alanine ligase [Hyphomicrobium denitrificans ATCC
           51888]
 gi|299523602|gb|ADJ22071.1| D-alanine/D-alanine ligase [Hyphomicrobium denitrificans ATCC
           51888]
          Length = 317

 Score =  356 bits (914), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 146/304 (48%), Positives = 203/304 (66%), Gaps = 5/304 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG+S+ER+VSL+SG A   AL + G++V++IDVDR++   L  + PD+ FN LHG
Sbjct: 15  VAVLKGGLSAERDVSLNSGAAVGEALREEGYRVTEIDVDRNLAAQLEAINPDVCFNALHG 74

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG VQ +LE+L IPYTHSG+LASAL+M K R+K ++   GV V  + LV R     
Sbjct: 75  KFGEDGCVQGVLEMLAIPYTHSGVLASALAMHKERAKDIMKLAGVAVAEAKLVTRREAAE 134

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            H++ PPYV+KP   GSS+G++++      P     +S  +    +++E+YV G ELTC 
Sbjct: 135 AHVLPPPYVVKPPTEGSSVGVVIVPPGADRPPS-SIASGGSPDQIVMVERYVPGRELTCA 193

Query: 181 VMGDASLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
           V+GD   DV EI   +   FY YE KY +  S H LPA++  D+Y+ V+ L   AHQA+G
Sbjct: 194 VIGDFVTDVIEIVPLRGLAFYDYESKYGAGGSKHELPAQLLPDVYQSVRSLTLRAHQALG 253

Query: 240 CRGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           CRG+SR+DF FD     + ++  LE+N QPGMT  S+ PE+A +AG+SF +L+ WMVEDA
Sbjct: 254 CRGVSRADFRFDDTAGGTGELICLEVNTQPGMTGTSLVPELAGHAGWSFGDLVRWMVEDA 313

Query: 297 SCLR 300
           SC R
Sbjct: 314 SCNR 317


>gi|331645202|ref|ZP_08346313.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB)
           (D-Ala-D-Ala ligase B) [Escherichia coli M605]
 gi|330909939|gb|EGH38449.1| D-alanine--D-alanine ligase B [Escherichia coli AA86]
 gi|331045959|gb|EGI18078.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB)
           (D-Ala-D-Ala ligase B) [Escherichia coli M605]
          Length = 306

 Score =  355 bits (913), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 105/305 (34%), Positives = 161/305 (52%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SG A  + L + G     +D        L  +     F  LHG
Sbjct: 5   IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119
             GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK +    G+PV P + + R   + 
Sbjct: 65  RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124

Query: 120 --------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P ++KP + GSS+G+  +  + ++   L    ++ H +++LIE++
Sbjct: 125 GLNDKQLAEISSLGLPVIVKPSREGSSVGMSKVVAENALQDALRL--AFQHDEEVLIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L    I  P   FY YE KY S  + +  PA +       +Q L 
Sbjct: 183 LSGPEFTVTILGEEILPSIRIQ-PAGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A   +GC+G  R D + D    + + LE N  PGMT  S+ P  A  A  SF +L++ 
Sbjct: 242 LKAWTTLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQADMSFSQLVVR 300

Query: 292 MVEDA 296
           ++E A
Sbjct: 301 ILELA 305


>gi|183599899|ref|ZP_02961392.1| hypothetical protein PROSTU_03420 [Providencia stuartii ATCC 25827]
 gi|188022174|gb|EDU60214.1| hypothetical protein PROSTU_03420 [Providencia stuartii ATCC 25827]
          Length = 306

 Score =  355 bits (913), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 109/306 (35%), Positives = 164/306 (53%), Gaps = 13/306 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL SG A  + L  AG     ID      + L     D  F  LHG
Sbjct: 5   VAVLFGGTSAEREVSLQSGNAVLAGLRQAGIDAHPIDTKDFPVVTLKDAGFDKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117
             GEDG +Q +LE L +PYT SG++ASALSMDK+R+KQ+    G+ V P + +++F    
Sbjct: 65  RGGEDGTIQGMLEFLGLPYTGSGVMASALSMDKLRTKQLWEGAGLAVSPYVSLSKFEFSS 124

Query: 118 ------MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                  +    +  P ++KP   GSS+G+  +     +   L    ++   + +LIE++
Sbjct: 125 LKTEKIEELVAYLGLPLIVKPSLEGSSVGMSKVDNLGDLSAALAL--AFRFDETVLIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  V+G+ +L    I  P   FY YE KY S  + +  P+ +      ++ +LA
Sbjct: 183 LSGPEYTVAVLGEQTLPSIRIQPP-GVFYDYEAKYLSDETQYFCPSGLDAGSEAQLSQLA 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A+QA+GCRG  R D + D    + + LE+N  PGMT  S+ P  A  AG  F +L++ 
Sbjct: 242 MRAYQAVGCRGWGRVDVMQD-SDGQFYLLEVNTSPGMTSHSLVPMAARQAGMDFSQLVVR 300

Query: 292 MVEDAS 297
           ++E A+
Sbjct: 301 ILELAN 306


>gi|154244282|ref|YP_001415240.1| D-alanine--D-alanine ligase [Xanthobacter autotrophicus Py2]
 gi|229486024|sp|A7IC40|DDL_XANP2 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|154158367|gb|ABS65583.1| D-alanine--D-alanine ligase [Xanthobacter autotrophicus Py2]
          Length = 306

 Score =  355 bits (913), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 167/303 (55%), Positives = 217/303 (71%), Gaps = 4/303 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSEREVSL SG ACA ALE AG++V+++DV R V  VL HLKPD+AFNVLHG
Sbjct: 5   VAVLMGGWSSEREVSLRSGAACAGALEAAGYRVTRVDVGRDVAEVLTHLKPDVAFNVLHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q ILE+L IPY+HSG+LASAL+MDK +++ ++++ GVPV    LV+R     
Sbjct: 65  QPGEDGTIQGILEILRIPYSHSGVLASALAMDKAQARIMLAAAGVPVAKGGLVSRAEAAK 124

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            H++  PYV+KP  GGSS+G+ ++++DQ+ P   L    W HG+ LL E+++ G+ELTC 
Sbjct: 125 AHIMPTPYVLKPNAGGSSVGVFIVREDQAHPPQELTREDWPHGENLLAEEFIPGLELTCA 184

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           VMGD  LDV EI      FY YE KY+   S H+LPA+I  +IY+ VQ L+  AH+A+GC
Sbjct: 185 VMGDKVLDVIEIE-STQKFYDYESKYAPGGSQHILPARILPEIYQRVQMLSLTAHRALGC 243

Query: 241 RGISRSDFLFDPLSRK---VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           RG+SRSDF FDP       +  LE+N QPGMT  S+ PE+AA+AG SF EL+ WMVEDAS
Sbjct: 244 RGVSRSDFRFDPSRGDGSGLICLEVNTQPGMTETSLVPELAAHAGISFGELVTWMVEDAS 303

Query: 298 CLR 300
             R
Sbjct: 304 LER 306


>gi|253689951|ref|YP_003019141.1| D-alanine/D-alanine ligase [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|259645170|sp|C6DEU1|DDL_PECCP RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|251756529|gb|ACT14605.1| D-alanine/D-alanine ligase [Pectobacterium carotovorum subsp.
           carotovorum PC1]
          Length = 306

 Score =  355 bits (913), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 109/305 (35%), Positives = 168/305 (55%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL SG+A  + L++AG     +D        L        F  LHG
Sbjct: 5   VAVLLGGTSAEREVSLLSGQAVLAGLKEAGINAHAVDTRDVSVTTLKEEGFTKIFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LE L +PYT SG++ASAL+MDK+R+KQV  + G+PV P + ++R     
Sbjct: 65  RGGEDGTLQGVLEFLGLPYTGSGVMASALTMDKLRTKQVWQAVGLPVSPYVALDRRQYSE 124

Query: 121 QHL---------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P ++KP + GSS+G+  +     +P  L    ++ H D +L+E++
Sbjct: 125 MAANALLATFTHLGLPLIVKPSREGSSVGMSKVNTLSELPAAL--EEAFRHDDDILVEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++GD  L    I  P   FY YE KY S ++ +  P+ +  +  +E+  LA
Sbjct: 183 LSGPEYTVAILGDEVLPSIRIQ-PAGTFYDYEAKYLSDDTQYFCPSGLSDEKEQELAGLA 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A++A+GC G  R DF+ D      + LE+N  PGMT  S+ P  A   G +F +L++ 
Sbjct: 242 MAAYRAVGCSGWGRVDFMLD-SDGAFYLLEVNTSPGMTSHSLVPMAAHQRGLTFSQLVVK 300

Query: 292 MVEDA 296
           ++E A
Sbjct: 301 ILELA 305


>gi|268591753|ref|ZP_06125974.1| D-alanine--D-alanine ligase B [Providencia rettgeri DSM 1131]
 gi|291312714|gb|EFE53167.1| D-alanine--D-alanine ligase B [Providencia rettgeri DSM 1131]
          Length = 306

 Score =  355 bits (913), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 109/305 (35%), Positives = 162/305 (53%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL SG A  + L  AG     ID        L     +  F  LHG
Sbjct: 5   VAVLLGGSSAEREVSLQSGNAVLAGLRQAGIDAHPIDPQDFPVETLKDAGFNKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LE L +PYT SG++ASALSMDK+R+KQ+    G+ V P + + +     
Sbjct: 65  RGGEDGTLQGLLETLNLPYTGSGVMASALSMDKLRTKQLWQGAGLSVSPYVYLTKQQYKQ 124

Query: 121 Q---------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P ++KP   GSS+G+  +   +++P  L    ++   + LLIE++
Sbjct: 125 ASYEQIVAKVQFLGLPLIVKPSLEGSSVGMSKVDNLEALPAALDL--AFQFDETLLIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  V+GD +L    I  P   FY YE KY S  + +  P+ +   +  E+  LA
Sbjct: 183 LSGPEFTVAVLGDNTLPPIRIQPP-GIFYDYEAKYLSDETQYFCPSGLDEQLESELADLA 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A+Q +GC G  R D + D  + + + LE+N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 242 LKAYQVVGCEGWGRVDVMQD-SNGQFYLLEVNTSPGMTSHSLVPMAARQAGMSFSQLVVQ 300

Query: 292 MVEDA 296
           ++  A
Sbjct: 301 ILRLA 305


>gi|325496028|gb|EGC93887.1| D-alanine--D-alanine ligase [Escherichia fergusonii ECD227]
          Length = 309

 Score =  355 bits (912), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 105/305 (34%), Positives = 163/305 (53%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SG A  + L + G     +D        L  +     F  LHG
Sbjct: 8   IAVLLGGTSAEREVSLNSGAAVLAGLREGGVDAYPVDPKDVDVAQLKSMGFQKVFIALHG 67

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LELL +PYT SG++ASA+SMDK+RSK +    G+PV P + + R   + 
Sbjct: 68  RGGEDGTLQGMLELLGLPYTGSGVMASAISMDKLRSKLLWQGAGLPVAPWVAITRTEFEK 127

Query: 121 ---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P ++KP + GSS+G+  +  + S+   L    ++ H D++L+E++
Sbjct: 128 GLSDEVVKQISALGLPLIVKPSREGSSVGMSKVVAENSVENALKL--AFQHDDEVLVEKW 185

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L    I  P   FY YE KY S  + +  P+ +  +    ++ L 
Sbjct: 186 LSGPEFTVAILGEEILPSIRIQ-PAGTFYDYEAKYLSDETQYFCPSGLEAEQESILKSLV 244

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A   +GC+G  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 245 QKAWTTLGCKGWGRIDVMLD-DDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 303

Query: 292 MVEDA 296
           ++E A
Sbjct: 304 ILELA 308


>gi|259419137|ref|ZP_05743054.1| D-alanine--D-alanine ligase [Silicibacter sp. TrichCH4B]
 gi|259345359|gb|EEW57213.1| D-alanine--D-alanine ligase [Silicibacter sp. TrichCH4B]
          Length = 308

 Score =  355 bits (912), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 141/302 (46%), Positives = 191/302 (63%), Gaps = 8/302 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +A+LMGG S+EREVSLS+G+ CA AL   G++V ++D    +   L  +KPD+ FN LHG
Sbjct: 13  VAMLMGGPSAEREVSLSTGRECARALRGEGYEVVEVDAGPDLVAQLKDIKPDVVFNALHG 72

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG VQ ILE L IPYTHSG+LASAL+MDK RSK      G+PV  S+L ++  + +
Sbjct: 73  RWGEDGCVQGILEWLRIPYTHSGVLASALAMDKERSKAAYRIAGLPVVDSVLASKDEVMA 132

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            H+I+PPYV+KP   GSS+GI ++ +  + P  L          ++++E Y  G E+T  
Sbjct: 133 GHVIAPPYVVKPNNEGSSVGIYIVHEAANSPPQLSDE----MPARVMVETYAPGREMTVT 188

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           VMGD +L VT+I      +Y YE KY++  S HVLPA +P +I       A  AH  +GC
Sbjct: 189 VMGDRALCVTDILT--DGWYDYEAKYATGGSRHVLPADVPEEITNLCLDYAARAHDVLGC 246

Query: 241 RGISRSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           RGISR+DF +D       +  LE N QPGMTP S+ PE A + G +F +L  W+VEDASC
Sbjct: 247 RGISRTDFRWDEARGAEGLVLLETNTQPGMTPTSLSPEQAEHCGITFGQLCAWLVEDASC 306

Query: 299 LR 300
            R
Sbjct: 307 ER 308


>gi|224581973|ref|YP_002635771.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|224466500|gb|ACN44330.1| D-alanylalanine synthetase [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
          Length = 306

 Score =  355 bits (912), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 108/305 (35%), Positives = 164/305 (53%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+ER+VSL+SG A  + L + G     +D        L  +     F  LHG
Sbjct: 5   IAVLLGGTSAERDVSLNSGAAVLAGLREGGIDAHPVDPQEVDVAQLKAMGFQKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LELL +PYT SG++ASALSMDK+RSK +    G+PV P + + R   + 
Sbjct: 65  RGGEDGTLQGMLELLGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124

Query: 121 ---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P ++KP + GSS+G+  + ++ ++   L  S ++ H D++LIE++
Sbjct: 125 GLSEEQKARISALGLPLIVKPSREGSSVGMTKVVEENALQGAL--SLAFQHDDEILIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L    I  P   FY YE KY S  + +  PA +       +Q L 
Sbjct: 183 LCGPEFTVAIVGEEILPSIRIQ-PAGTFYDYEAKYLSDETQYFCPAGLEASQEAALQSLV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A +A+GC G  R D + D    + + LE N  PGMT  S+ P  A  AG S  +L++ 
Sbjct: 242 LQAWKALGCTGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSLSQLVVR 300

Query: 292 MVEDA 296
           ++E A
Sbjct: 301 ILELA 305


>gi|218547549|ref|YP_002381340.1| D-alanine--D-alanine ligase [Escherichia fergusonii ATCC 35469]
 gi|218355090|emb|CAQ87697.1| D-alanine:D-alanine ligase [Escherichia fergusonii ATCC 35469]
 gi|324112495|gb|EGC06472.1| D-alanine-D-alanine ligase [Escherichia fergusonii B253]
          Length = 306

 Score =  355 bits (912), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 105/305 (34%), Positives = 163/305 (53%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SG A  + L + G     +D        L  +     F  LHG
Sbjct: 5   IAVLLGGTSAEREVSLNSGAAVLAGLREGGVDAYPVDPKDVDVAQLKSMGFQKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LELL +PYT SG++ASA+SMDK+RSK +    G+PV P + + R   + 
Sbjct: 65  RGGEDGTLQGMLELLGLPYTGSGVMASAISMDKLRSKLLWQGAGLPVAPWVAITRTEFEK 124

Query: 121 ---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P ++KP + GSS+G+  +  + S+   L    ++ H D++L+E++
Sbjct: 125 GLSDEVVKQISALGLPLIVKPSREGSSVGMSKVVAENSVENALKL--AFQHDDEVLVEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L    I  P   FY YE KY S  + +  P+ +  +    ++ L 
Sbjct: 183 LSGPEFTVAILGEEILPSIRIQ-PAGTFYDYEAKYLSDETQYFCPSGLEAEQESILKSLV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A   +GC+G  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 242 QKAWTTLGCKGWGRIDVMLD-DDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300

Query: 292 MVEDA 296
           ++E A
Sbjct: 301 ILELA 305


>gi|298507094|gb|ADI85817.1| D-alanine--D-alanine ligase [Geobacter sulfurreducens KN400]
          Length = 316

 Score =  355 bits (911), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 115/300 (38%), Positives = 186/300 (62%), Gaps = 7/300 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VLMGG+S+EREVSL+SG A  +AL+  G+    +DV R +  VL     D+AF  LHG
Sbjct: 11  IGVLMGGLSAEREVSLASGGAVLNALQSRGYDAVPVDVGRDLPQVLVREWIDVAFICLHG 70

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG VQ +LEL+ IPYT SG+LASAL+M+K+ +K+V ++ G+ V P  +V R     
Sbjct: 71  RYGEDGTVQGLLELMGIPYTGSGVLASALAMNKIVAKEVFAARGLTVAPYRVVRRGEAVD 130

Query: 121 Q--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                   P V+KP + GSS+G+ ++K  + +P  L   +++ + D +L+E+++ G E+ 
Sbjct: 131 PVAEGFGYPVVVKPSQEGSSVGVSIVKSPEELPYAL--ETAFRYDDDILVERFIKGREIQ 188

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
            G++ D ++   EI VP ++FY +E KY++  + H+ P  +P ++Y+ +      AH+A+
Sbjct: 189 IGILDDRAMGAIEI-VPVNEFYDFEAKYTAGKAEHICPPVLPAELYRRLLAEGETAHRAL 247

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA-AYAGYSFRELLLWMVEDAS 297
           GC G SR DFL      + + LE+N  PGMT +S+ PE+A   +G  F +L+  ++  A+
Sbjct: 248 GCSGYSRVDFLVTE-GGECYLLEVNTLPGMTALSLLPEIALKESGIGFEDLVERILISAA 306


>gi|251792025|ref|YP_003006745.1| D-alanine--D-alanine ligase [Aggregatibacter aphrophilus NJ8700]
 gi|247533412|gb|ACS96658.1| D-alanine--D-alanine ligase B [Aggregatibacter aphrophilus NJ8700]
          Length = 309

 Score =  355 bits (911), Expect = 6e-96,   Method: Composition-based stats.
 Identities = 111/303 (36%), Positives = 171/303 (56%), Gaps = 10/303 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SG A   AL   G+    ID        L     D  FN+LHG
Sbjct: 10  IAVLLGGTSAEREVSLNSGNAVLVALRKQGYDAHPIDPKTFPVATLKEQGFDRVFNILHG 69

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117
             GEDG +Q +LE + +PYT  G++ASAL+MDKMR+K +  + G+PV    +V +     
Sbjct: 70  RGGEDGTMQGLLEQIGLPYTGCGVMASALTMDKMRTKMLWKAFGLPVAEMEIVTKENRVN 129

Query: 118 ---MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
              M     +  P ++KP   GSS+G+  +K  + +   +  +  ++    +LIE+++ G
Sbjct: 130 LNPMAVVKKLGLPLMVKPSLEGSSVGLTKVKAVEELESAVDFALKFDR--TVLIEEWLAG 187

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
            E T  V+    L   +I VP+ +FY Y+ KY S N+ +  PA +  +  +E++RL   A
Sbjct: 188 DEFTVPVLDGEVLPSIKI-VPEGEFYDYDAKYISDNTQYFCPAGLTEEREQELRRLVKQA 246

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           +  +GCRG SR D + D    K   +E+N  PGMT  S+FP+ AA  GYSF +L+  ++E
Sbjct: 247 YDVVGCRGWSRIDVMADA-EGKFRLVEVNTNPGMTSHSLFPKSAATVGYSFEQLVEKILE 305

Query: 295 DAS 297
            ++
Sbjct: 306 LSA 308


>gi|170768438|ref|ZP_02902891.1| D-alanine--D-alanine ligase B [Escherichia albertii TW07627]
 gi|170122542|gb|EDS91473.1| D-alanine--D-alanine ligase B [Escherichia albertii TW07627]
          Length = 306

 Score =  355 bits (911), Expect = 6e-96,   Method: Composition-based stats.
 Identities = 105/305 (34%), Positives = 162/305 (53%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SG A  + L + G     +D        L  +     F  LHG
Sbjct: 5   IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEIDVTQLKSMGFQKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119
             GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK +    G+PV P + + R   + 
Sbjct: 65  RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124

Query: 120 --------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P ++KP + GSS+G+  +  + ++   L    ++ H +++LIE++
Sbjct: 125 GLSDEQIADISALGLPLIVKPSREGSSVGMSKVVAENTLQDALRL--AFQHDEEVLIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L    I  P   FY YE KY S  + +  P+ +       +Q L 
Sbjct: 183 LSGPEFTVAILGEEILPSIRIQ-PAGTFYDYEAKYLSDETQYFCPSGLEASQEANLQALV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A   +GC+G  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 242 LKAWMTLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGLSFSQLVVR 300

Query: 292 MVEDA 296
           ++E A
Sbjct: 301 ILELA 305


>gi|310765080|gb|ADP10030.1| D-alanine--D-alanine ligase [Erwinia sp. Ejp617]
          Length = 306

 Score =  354 bits (910), Expect = 7e-96,   Method: Composition-based stats.
 Identities = 111/305 (36%), Positives = 169/305 (55%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+ER+VSL SG A    L++AG     +D+       L     D AF  LHG
Sbjct: 5   VAVLLGGTSAERDVSLLSGAAVLKGLQEAGIDAHAVDIRDFPVTRLNEEGFDKAFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LELL+IPYT SG++ASA++MDK+RSK +   CG+PV P + +NR  MD+
Sbjct: 65  RGGEDGTLQGVLELLDIPYTGSGVMASAITMDKLRSKYLWQGCGLPVSPFVALNRVQMDA 124

Query: 121 ---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                     + +  P  +KP + GSS+GI  + +   +   L    ++   +++L+E +
Sbjct: 125 GLDAQLMTSINALGLPLFVKPSREGSSVGISRVNQASELQAAL--EEAFRFDNEVLVEAF 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T GV+G   L    I    S+FY Y+ KY S  + +  P+ +  D   E++ L 
Sbjct: 183 LSGPEYTVGVLGSDILPSIRIQT-TSEFYDYDAKYISDETQYFCPSGLSADQETELRELT 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A +A+GC G  R D +        + LE+N  PGMT  S+ P  A  AG +F +L++ 
Sbjct: 242 IAAWRALGCSGWGRVDVMM-GADGHFYLLEVNTSPGMTSHSLVPMAAKQAGMTFSQLVVR 300

Query: 292 MVEDA 296
           ++E A
Sbjct: 301 ILELA 305


>gi|205351469|ref|YP_002225270.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|205271250|emb|CAR36038.1| D-alanine:D-alanine ligase B [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|326626496|gb|EGE32839.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 9]
          Length = 306

 Score =  354 bits (910), Expect = 8e-96,   Method: Composition-based stats.
 Identities = 109/305 (35%), Positives = 164/305 (53%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+ER+VSL+SG A  + L + G     +D        L  +     F  LHG
Sbjct: 5   IAVLLGGTSAERDVSLNSGAAVLAGLREGGIDAHPVDPQEVDVAQLKAMGFQKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LELL +PYT SG++ASALSMDK+RSK +    G+PV P + + R   + 
Sbjct: 65  RGGEDGTLQGMLELLGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124

Query: 121 ---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P ++KP + GSS+G+  + ++ ++   L  S S+ H D++LIE++
Sbjct: 125 GLSEEQKARISALGLPLIVKPSREGSSVGMTKVVEENALQGAL--SLSFQHDDEILIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L    I  P   FY YE KY S  + +  PA +       +Q L 
Sbjct: 183 LCGPEFTVAIVGEEILPSIRIQ-PAGTFYDYEAKYLSDETQYFCPAGLDASQEAALQSLV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A +A+GC G  R D + D    + + LE N  PGMT  S+    A  AG SF +L++ 
Sbjct: 242 LQAWKALGCTGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVTMAARQAGMSFSQLVVR 300

Query: 292 MVEDA 296
           ++E A
Sbjct: 301 ILELA 305


>gi|188532904|ref|YP_001906701.1| D-alanine--D-alanine ligase [Erwinia tasmaniensis Et1/99]
 gi|229485955|sp|B2VD93|DDL_ERWT9 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|188027946|emb|CAO95803.1| D-alanine-D-alanine ligase [Erwinia tasmaniensis Et1/99]
          Length = 306

 Score =  354 bits (910), Expect = 8e-96,   Method: Composition-based stats.
 Identities = 113/305 (37%), Positives = 168/305 (55%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+ER+VSL SG A    L++AG     ID+     + L     D AF  LHG
Sbjct: 5   VAVLLGGTSAERDVSLLSGAAVLKGLKEAGIDAHAIDIRDFPAMRLKEEGFDKAFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LE L IPYT SG++ASA++MDK+RSK +   CG+PV P + +NR  MD+
Sbjct: 65  RGGEDGTLQGVLEFLAIPYTGSGVMASAITMDKLRSKYLWQGCGLPVSPFVALNRAQMDA 124

Query: 121 ---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P  +KP + GSS+GI  + +   +   L +  ++   D++L+E +
Sbjct: 125 GLDAQLMTSIDALGLPLFVKPSREGSSVGISRVNQASELQAALQE--AFRFDDEVLVEAF 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T GV+G   L    I    S+FY Y+ KY S  + +  P+ +  D   E++ L 
Sbjct: 183 LSGPEYTVGVIGTDILPSIRIQTA-SEFYDYDAKYLSDETQYFCPSGLSADQEAELRELT 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A +A+GC G  R D +      + + LE+N  PGMT  S+ P  A  AG SF +L+  
Sbjct: 242 IAAWRALGCSGWGRVDVMM-GADGQFYLLEVNTSPGMTSHSLVPMAANQAGMSFSQLVAR 300

Query: 292 MVEDA 296
           ++E A
Sbjct: 301 ILELA 305


>gi|52425719|ref|YP_088856.1| D-alanine--D-alanine ligase [Mannheimia succiniciproducens MBEL55E]
 gi|81386800|sp|Q65RY9|DDL_MANSM RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|52307771|gb|AAU38271.1| DdlA protein [Mannheimia succiniciproducens MBEL55E]
          Length = 307

 Score =  354 bits (909), Expect = 9e-96,   Method: Composition-based stats.
 Identities = 111/303 (36%), Positives = 179/303 (59%), Gaps = 10/303 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SG A  +AL + G+    ID        L     + AFN+LHG
Sbjct: 9   IAVLLGGTSAEREVSLTSGDAVLTALRNQGYDAHPIDPKEYPVAQLKEQGFERAFNILHG 68

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG++Q +LE + +PYT  G++ SAL+MDKMR+K +    G+P+    +V R T+D 
Sbjct: 69  RGGEDGVIQGVLEQIGLPYTGCGVMTSALTMDKMRTKMLWKGFGLPIADMEIVTRDTVDE 128

Query: 121 Q------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
                    +  P ++KP + GSS+G+  +   + +   +  +    H D +LIE+++ G
Sbjct: 129 LNPLEVVERLGLPLMVKPSREGSSVGLTKVNAVEELKNAVDLAL--THDDTVLIEEWLSG 186

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
           IE+T  V+ D  L   +I +P+ +FY Y+ KY S N+ ++ PA +  +  +E+Q+L   A
Sbjct: 187 IEMTVPVLDDQVLPAVQI-IPEGEFYDYDAKYISDNTRYICPAPMSEESLQELQKLVKRA 245

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           +  +GCRG SR D +    +     +E+N  PGMT  S+FP+ AA  GYSF +L++ ++E
Sbjct: 246 YDVVGCRGWSRIDVM-TDANGNFRLVEVNTTPGMTSHSLFPKSAATVGYSFEQLVVKILE 304

Query: 295 DAS 297
            ++
Sbjct: 305 LSA 307


>gi|115524126|ref|YP_781037.1| D-alanine--D-alanine ligase [Rhodopseudomonas palustris BisA53]
 gi|122296540|sp|Q07PS7|DDL_RHOP5 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|115518073|gb|ABJ06057.1| D-alanine--D-alanine ligase [Rhodopseudomonas palustris BisA53]
          Length = 308

 Score =  354 bits (909), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 158/303 (52%), Positives = 205/303 (67%), Gaps = 4/303 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG SSEREVSL SG ACA ALE  GF+V++IDV R +  VL  L+PD A  +LHG
Sbjct: 7   VAVLLGGWSSEREVSLRSGNACADALERRGFEVTRIDVARDIATVLDQLRPDSALMMLHG 66

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
           + GEDG +Q +LE L IPY+HSG+LASAL+M K  +K V+ + GVPV   + ++R  +  
Sbjct: 67  HPGEDGSIQGVLETLAIPYSHSGVLASALAMQKDLAKTVMKTAGVPVAEGLTLSRDEIAR 126

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            H++ PPYVIKP+  GSS+G+ +I +    P   L    W +GD+LL+E+YV G ELTC 
Sbjct: 127 GHVMEPPYVIKPVADGSSVGVYIITEQHQHPPQELFRDDWAYGDKLLVEKYVAGKELTCA 186

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V+     DV EI VP   FY YE KYS   S HVLPA +   +Y+EV+RL   AH A+GC
Sbjct: 187 VVKGEPTDVIEI-VPMVRFYDYEAKYSPGASKHVLPASLLPFVYQEVRRLTLAAHVALGC 245

Query: 241 RGISRSDFLFD---PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           RG+SR+DF FD     +  +  LE+N QPGMT  S+ PE+AAYAG +F EL+ WMVEDAS
Sbjct: 246 RGVSRADFRFDDRIEGTGGLVCLEVNTQPGMTETSLVPELAAYAGITFDELVQWMVEDAS 305

Query: 298 CLR 300
             R
Sbjct: 306 LDR 308


>gi|260913005|ref|ZP_05919490.1| D-alanine-D-alanine ligase B [Pasteurella dagmatis ATCC 43325]
 gi|260632995|gb|EEX51161.1| D-alanine-D-alanine ligase B [Pasteurella dagmatis ATCC 43325]
          Length = 318

 Score =  354 bits (909), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 113/303 (37%), Positives = 176/303 (58%), Gaps = 10/303 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SG+A  +AL +AGF    ID        L     D  FN+LHG
Sbjct: 19  IAVLLGGTSAEREVSLNSGQAVLNALLNAGFDAHPIDPKNFPVASLKEQGFDRVFNILHG 78

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117
             GEDG +Q +LE + IPYT  G++ASAL+MDKMR+K +  + G+PV    +V +     
Sbjct: 79  RGGEDGTMQGLLEQIGIPYTGCGVMASALTMDKMRTKMLWKAFGLPVAEMEIVTKNNVAE 138

Query: 118 ---MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
               +    +  P ++KP   GSS+G+  +K  + +   +  +  +   + +LIE+++ G
Sbjct: 139 LNPAEVVEKLGLPLMVKPSLEGSSVGLTKVKAVEDLKSAVDFALKF--DETVLIEEWLAG 196

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
            ELT  V+ +  L    I VP+ +FY YE KY S N+ +  PA +  +  +E+ +L   A
Sbjct: 197 DELTIPVLDNEVLPAVRI-VPEGEFYDYEAKYLSDNTQYFCPAGLSKEREQELNQLVKRA 255

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           +  +GCRG SR D + D    +   +E+N  PGMT  S+FP+ AA  GYSF +L++ ++E
Sbjct: 256 YDVVGCRGWSRIDVMTDSK-GQFRLVEVNTNPGMTSHSLFPKSAAVVGYSFEQLVVRILE 314

Query: 295 DAS 297
            ++
Sbjct: 315 LSA 317


>gi|15602009|ref|NP_245081.1| D-alanine--D-alanine ligase [Pasteurella multocida subsp. multocida
           str. Pm70]
 gi|13431429|sp|P57819|DDL_PASMU RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|12720361|gb|AAK02228.1| DdlB [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 309

 Score =  354 bits (908), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 111/303 (36%), Positives = 172/303 (56%), Gaps = 10/303 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL SG+A  +AL  AGF    ID        L     D  FN+LHG
Sbjct: 10  IAVLLGGTSAEREVSLDSGQAVLNALLSAGFDAHPIDPKTFPVATLKEQGFDRVFNILHG 69

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LE + IPYT  G++ SAL+MDKMR+K +  + G+PV    +V +  +  
Sbjct: 70  RGGEDGTMQGLLEQIGIPYTGCGVMTSALTMDKMRTKMLWKAFGLPVAEMEIVTKANVGE 129

Query: 121 Q------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
                    +  P ++KP   GSS+G+  +K+ + +   +    +  + D +LIE+++ G
Sbjct: 130 LNPSAVVEKLGLPVMVKPSLEGSSVGLTKVKRVEDLKSAV--DFALKYDDTVLIEEWLSG 187

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
            E T  V+ +  L    I VP+ +FY YE KY S N+ +  P+ +  +   E+++L   A
Sbjct: 188 AEFTVPVLDNEVLPSIRI-VPEGEFYDYEAKYISDNTQYFCPSGLSAEREDELKQLVKQA 246

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           +  +GCRG SR D + D        +E+N  PGMT  S+FP+ AA  GYSF +L++ ++E
Sbjct: 247 YDVVGCRGWSRIDVMLDGND-AFRLVEVNTNPGMTSHSLFPKSAATVGYSFEQLVVKILE 305

Query: 295 DAS 297
            ++
Sbjct: 306 LSA 308


>gi|292489355|ref|YP_003532242.1| D-alanine-D-alanine ligase [Erwinia amylovora CFBP1430]
 gi|292898421|ref|YP_003537790.1| D-alanine--D-alanine ligase B [Erwinia amylovora ATCC 49946]
 gi|291198269|emb|CBJ45375.1| D-alanine--D-alanine ligase B [Erwinia amylovora ATCC 49946]
 gi|291554789|emb|CBA22610.1| D-alanine-D-alanine ligase [Erwinia amylovora CFBP1430]
          Length = 306

 Score =  353 bits (907), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 110/305 (36%), Positives = 166/305 (54%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+ER+VSL SG A    L++AG     +D+       L     + AF  LHG
Sbjct: 5   VAVLLGGTSAERDVSLLSGTAVLKGLQEAGIDAYPVDIRDFPVTRLKEEGFEKAFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LE L IPYT SG++ASA++MDK+RSK +   CG+PV P + + R  MD+
Sbjct: 65  RGGEDGTLQGVLEFLNIPYTGSGVMASAITMDKLRSKYLWQGCGLPVSPFVALTRAQMDA 124

Query: 121 ---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P  +KP + GSS+GI  + +   +   L ++  ++H  ++L+E +
Sbjct: 125 GLDAQVMASIDALGLPLFVKPSREGSSVGISRVNQASELQAALEEAFRFDH--EVLVEAF 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T GV+G   L    I    S+FY Y+ KY S  + +  P+ +  D   E++ L 
Sbjct: 183 LSGPEYTVGVLGTDILPSIRIQTA-SEFYDYDAKYFSDETQYFCPSGLSADQEAELRELT 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A  A+GC G  R D +      + + LE+N  PGMT  S+ P  A  AG SF +L+  
Sbjct: 242 ISAWNALGCSGWGRVDVMM-GGDGRFYLLEVNTSPGMTSHSLVPMAAKQAGMSFSQLVAR 300

Query: 292 MVEDA 296
           ++E A
Sbjct: 301 ILELA 305


>gi|34499796|ref|NP_904011.1| D-alanine--D-alanine ligase [Chromobacterium violaceum ATCC 12472]
 gi|39930963|sp|Q7NQ01|DDLB_CHRVO RecName: Full=D-alanine--D-alanine ligase B; AltName:
           Full=D-Ala-D-Ala ligase B; AltName: Full=D-alanylalanine
           synthetase B
 gi|34105646|gb|AAQ62000.1| D-alanine--D-alanine ligase [Chromobacterium violaceum ATCC 12472]
          Length = 303

 Score =  353 bits (907), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 102/297 (34%), Positives = 159/297 (53%), Gaps = 6/297 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSEREVSL SG    SAL   G      D        L     D  FN+LHG
Sbjct: 7   VAVLMGGSSSEREVSLMSGAGVLSALRSKGVDAHGFDPSEKPLSALKEEGFDCVFNILHG 66

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR-FTMD 119
            FGEDG +Q  LE L +PYT  G++ASA++MDK R+K +    G+P+    L++     D
Sbjct: 67  PFGEDGTLQGALEALGMPYTGCGVMASAIAMDKWRTKLLWKGAGLPIPAFELLDENSDFD 126

Query: 120 S-QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           + +  +  P  +KP   GSS+G+  +K+   +        +  +   ++ EQ++ G E T
Sbjct: 127 AIERQLGLPIFVKPSTEGSSIGVTKVKQPGELRAAF--EEARKYDKVVIAEQFIGGGEYT 184

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           C V+G+ +    +I  P +++Y Y+ KY   ++ +  P+ +  ++    + LA  A + +
Sbjct: 185 CAVIGETAYPTIKIE-PATEYYDYQAKYFRDDTVYRCPSGLAPEVEARARELALKAFKVL 243

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           GCRG SR DFL D    +++ LE N  PGMT  S+ P  A   G ++ +L L +++ 
Sbjct: 244 GCRGWSRVDFLMDEA-GEIYLLEANTSPGMTSHSLVPMAARAEGIAYEDLCLKVLDT 299


>gi|84516385|ref|ZP_01003744.1| D-alanine--D-alanine ligase [Loktanella vestfoldensis SKA53]
 gi|84509421|gb|EAQ05879.1| D-alanine--D-alanine ligase [Loktanella vestfoldensis SKA53]
          Length = 330

 Score =  353 bits (907), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 142/302 (47%), Positives = 191/302 (63%), Gaps = 8/302 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VLMGG S+EREVSLS+G+ CA+AL  A   V ++D    +   L  + PD  FN LHG
Sbjct: 35  VVVLMGGPSAEREVSLSTGRECAAALRAAECDVIEVDAGPDLATRLTQIAPDAVFNALHG 94

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG VQ +LE L IPYTHSGILASAL++DK R+K +  + G+PV  SIL +   + +
Sbjct: 95  RWGEDGAVQGLLEWLRIPYTHSGILASALTLDKERTKDIYRAVGLPVVDSILADADDVRA 154

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +H++ PPYV+KP   GSS+GI +++   + P  L    S +   ++++E Y  G ELT  
Sbjct: 155 RHVMPPPYVVKPYNEGSSVGIYIVQDAANGPPQL----SADMPARVMVETYAPGRELTTT 210

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           VMGD +L VT+I      +Y Y  KY+   S HV+PA+IP  I+      A  AH+A+GC
Sbjct: 211 VMGDRALTVTDIIT--DGWYDYHAKYAPGGSRHVVPAEIPAQIFDACMDYALRAHRALGC 268

Query: 241 RGISRSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           RGISR+DF +D       +  LE N QPGMTP S+ PE AA  G SF +L  W+VEDASC
Sbjct: 269 RGISRTDFRWDESRGLDGLILLETNTQPGMTPTSLAPEQAAKVGISFPQLCRWLVEDASC 328

Query: 299 LR 300
            R
Sbjct: 329 DR 330


>gi|157147484|ref|YP_001454803.1| D-alanine--D-alanine ligase [Citrobacter koseri ATCC BAA-895]
 gi|157084689|gb|ABV14367.1| hypothetical protein CKO_03283 [Citrobacter koseri ATCC BAA-895]
          Length = 306

 Score =  353 bits (907), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 105/305 (34%), Positives = 164/305 (53%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+ER+VSL+SG A  + L + G     ID       +L  +     F  LHG
Sbjct: 5   IAVLLGGTSAERDVSLNSGAAVLAGLREGGVDAHPIDPKEVDVTLLKSMGFQKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +L+L+ +PYT SG++ASA+SMDK+RSK +    G+PV P + + R   + 
Sbjct: 65  RGGEDGTLQGMLDLIGLPYTGSGVMASAISMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124

Query: 121 ---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P ++KP + GSS+G+  +   +   L    + ++ H +++LIE++
Sbjct: 125 GLSDDALTRISALGLPLIVKPSREGSSVGMSKV--VEENALQAALALAFQHDEEVLIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L    I  P   FY YE KY S  + +  PA +  +    +Q L 
Sbjct: 183 LSGPEFTVAILGEEILPSIRIQ-PAGTFYDYEAKYLSDETQYFCPAGLEEEQEAILQTLV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A  A+GC+G  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 242 LKAWTALGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300

Query: 292 MVEDA 296
           ++E A
Sbjct: 301 ILELA 305


>gi|163741566|ref|ZP_02148957.1| D-alanine--D-alanine ligase [Phaeobacter gallaeciensis 2.10]
 gi|161385300|gb|EDQ09678.1| D-alanine--D-alanine ligase [Phaeobacter gallaeciensis 2.10]
          Length = 292

 Score =  353 bits (906), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 133/298 (44%), Positives = 192/298 (64%), Gaps = 8/298 (2%)

Query: 5   MGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGE 64
           MGG S+EREVSLS+G+ CA+AL D G++V+++D    +   L   +PD+ FN LHG +GE
Sbjct: 1   MGGPSAEREVSLSTGRECATALRDEGYQVTELDAGPDLAARLQADRPDVVFNALHGRWGE 60

Query: 65  DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI 124
           DG VQ +LE L IPYTHSG+LASAL+MDK R+K +  + G+PV  S + ++  + + H++
Sbjct: 61  DGCVQGLLEWLGIPYTHSGVLASALAMDKQRAKSIYRAAGLPVVESGIYSKTEVMAGHVM 120

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
           +PPYV+KP   GSS+G+ ++ +  + P  L    S +   ++++E +  G ELT  V+GD
Sbjct: 121 APPYVVKPNNEGSSVGVYLVNEVANGPPQL----SADMPHEVMVESFAPGRELTTTVLGD 176

Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244
             L VT+I      +Y Y+ KY    S HVLPA +P +I+      A  AH A+GCRGIS
Sbjct: 177 KPLMVTDILT--DGWYDYDAKYKPGGSRHVLPADVPEEIFALCLDYAVKAHDALGCRGIS 234

Query: 245 RSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           R+DF +D       +  LE N QPGMTP S+ PE A ++G +F +L  W+VEDA+C R
Sbjct: 235 RTDFRWDEARGAEGLILLETNTQPGMTPTSLTPEQAEHSGMTFGQLCSWLVEDATCPR 292


>gi|306843225|ref|ZP_07475836.1| D-alanine--D-alanine ligase [Brucella sp. BO2]
 gi|306286590|gb|EFM58167.1| D-alanine--D-alanine ligase [Brucella sp. BO2]
          Length = 308

 Score =  353 bits (906), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 176/303 (58%), Positives = 229/303 (75%), Gaps = 3/303 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSER VSLSSG ACA+ LE+ G++V++IDVDR+V  +LA LKPD+ FN LHG
Sbjct: 6   VAVLMGGFSSERSVSLSSGAACATTLEECGYRVTRIDVDRNVASILAELKPDVVFNALHG 65

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG +Q +LE L+IPYTHSG+LASAL+MDK R+K V ++ GV V PS L+NRF + S
Sbjct: 66  PFGEDGAIQGVLEYLQIPYTHSGVLASALAMDKGRAKTVAAAAGVVVAPSRLMNRFDIGS 125

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           QH + PPYV+KP++ GSS G++++K+DQ  P  ++ S+ W +GD++++E Y+ G ELTC 
Sbjct: 126 QHPMKPPYVVKPVREGSSFGVVIVKEDQPHPPQVIGSADWRYGDEVMVEGYIAGRELTCA 185

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           VMGD ++DV EI      FY Y+ KY +  STHV PAKI  +IY+++Q +A  AH+AIGC
Sbjct: 186 VMGDRAMDVCEIIPVGYQFYDYDSKYVAGASTHVCPAKILPNIYQKIQTMALTAHRAIGC 245

Query: 241 RGISRSDFLFDP---LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           RG+SRSDF FD       +V WLEIN QPGMTP S+ P++A  AG SF ELL WMVEDAS
Sbjct: 246 RGVSRSDFRFDDRFSEEGEVVWLEINTQPGMTPTSLVPDIAKAAGISFAELLSWMVEDAS 305

Query: 298 CLR 300
           CLR
Sbjct: 306 CLR 308


>gi|260427103|ref|ZP_05781082.1| D-alanine--D-alanine ligase [Citreicella sp. SE45]
 gi|260421595|gb|EEX14846.1| D-alanine--D-alanine ligase [Citreicella sp. SE45]
          Length = 306

 Score =  353 bits (906), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 141/302 (46%), Positives = 193/302 (63%), Gaps = 8/302 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSLSSG+ CA+AL   GF+V+++D    +   L  L PD+ FN LHG
Sbjct: 11  VAVLLGGPSAEREVSLSSGRECAAALRAEGFQVTEVDAGPDLAQQLQALAPDVVFNALHG 70

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG VQ +LE + IPYTHSG+LASAL+MDK RSKQV    G+PV  S+L ++  +++
Sbjct: 71  RWGEDGCVQGLLEWIGIPYTHSGVLASALAMDKERSKQVYRDAGLPVVESVLASKDEIEA 130

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            H+++PPYV+KP   GSS+G+ ++    + P  L    S    + L++E Y  G ELT  
Sbjct: 131 AHVMAPPYVVKPYNEGSSVGVYLVMDGANTPPRL----SPEMPETLMVETYAPGRELTTT 186

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V+GD +L VT+I      +Y Y+ KY    S HVLPA +P +++      A  AH+A+GC
Sbjct: 187 VVGDRALTVTDILT--DGWYDYDAKYKDGGSRHVLPAAVPQEVFDACLDYALRAHRALGC 244

Query: 241 RGISRSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           RG+SR+DF +D       +  LE N QPGMTP S+ PE     G SF  L  WMVEDA+C
Sbjct: 245 RGVSRTDFRWDESRGLDGLILLETNTQPGMTPTSLAPEQGQSVGISFGALCRWMVEDATC 304

Query: 299 LR 300
            R
Sbjct: 305 NR 306


>gi|254418986|ref|ZP_05032710.1| D-ala D-ala ligase N-terminal domain protein, putative
           [Brevundimonas sp. BAL3]
 gi|196185163|gb|EDX80139.1| D-ala D-ala ligase N-terminal domain protein, putative
           [Brevundimonas sp. BAL3]
          Length = 313

 Score =  352 bits (904), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 151/305 (49%), Positives = 206/305 (67%), Gaps = 6/305 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL-KPDLAFNVLH 59
           +AVLMGG+S+EREVSL+SG+ CA ALE  G +VS++D  R +  VL+ L KPD+  N LH
Sbjct: 10  VAVLMGGLSAEREVSLTSGEQCAQALERQGVRVSRVDAGRDLANVLSGLIKPDVVLNCLH 69

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G +GEDG VQ +LE L IPYTHSG+LASAL+MDK RSK V+ + GV V    L +R  + 
Sbjct: 70  GAWGEDGCVQGVLETLRIPYTHSGVLASALAMDKNRSKAVLKAAGVKVPGGGLYDRHEVA 129

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
           S+H+I PPYV+KP   GSS+G+ ++ +  + P+  +    W +G+Q+++E Y+ G EL  
Sbjct: 130 SRHVIEPPYVVKPNAEGSSVGVYLVSEGANRPVAEVGEPGWAYGEQVMVEPYIAGKELAV 189

Query: 180 GVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
            V+    G  +L VT+I  P   FY YE KY+   S HVLPA +P  +++   R A  AH
Sbjct: 190 AVIGYADGPRALTVTDI-TPTKGFYDYEAKYAPGGSVHVLPAVLPPAVFEAALRQAEAAH 248

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
            A+GCRG+SRSDF +D +   +  LE+N QPGMTP S+ PE AA+ G S+ +L+ WMVED
Sbjct: 249 VAMGCRGVSRSDFRYDDVKDDLVLLEVNTQPGMTPTSLAPEQAAHTGMSYEDLVRWMVED 308

Query: 296 ASCLR 300
           ASC R
Sbjct: 309 ASCPR 313


>gi|39998157|ref|NP_954108.1| D-alanine--D-alanine ligase [Geobacter sulfurreducens PCA]
 gi|81701145|sp|Q748D8|DDL_GEOSL RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|39985103|gb|AAR36458.1| D-alanine--D-alanine ligase [Geobacter sulfurreducens PCA]
          Length = 316

 Score =  352 bits (904), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 113/299 (37%), Positives = 183/299 (61%), Gaps = 7/299 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VLMGG+S+EREVSL+SG A   AL+  G+    +DV R +  VL     D+AF  LHG
Sbjct: 11  IGVLMGGLSAEREVSLASGGAVLKALQSRGYDAVPVDVGRDLPQVLVREWIDVAFICLHG 70

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--M 118
            +GEDG VQ +LEL+ IPYT SG+LASAL+M+K+ +K+V ++ G+ + P  +V R     
Sbjct: 71  RYGEDGTVQGLLELMGIPYTGSGVLASALAMNKIVAKEVFAARGLTIAPYRVVRRGETVD 130

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                   P V+KP + GSS+G+ ++K  + +P  L    ++ + D +L+E+++ G E+ 
Sbjct: 131 PVAEGFGYPVVVKPSQEGSSVGVSIVKSPEELPSAL--ELAFRYDDDILVERFIKGREIQ 188

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
            G++ D ++   EI VP ++FY +E KY++  + H+ P  +P ++++ +      AH+A+
Sbjct: 189 IGILDDRAMGAIEI-VPVNEFYDFEAKYTAGKAEHICPPVLPAELHRRLLAEGEAAHRAL 247

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA-AYAGYSFRELLLWMVEDA 296
           GC G SR DFL      + + LE+N  PGMT +S+ PE+A   +G  F +L+  ++  A
Sbjct: 248 GCSGYSRVDFLVTE-GGECYLLEVNTLPGMTALSLLPEIALKESGIGFEDLVERILISA 305


>gi|16273066|ref|NP_439298.1| D-alanine--D-alanine ligase [Haemophilus influenzae Rd KW20]
 gi|260580224|ref|ZP_05848054.1| D-alanylalanine synthetase [Haemophilus influenzae RdAW]
 gi|1169257|sp|P44405|DDL_HAEIN RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|1574696|gb|AAC22795.1| D-alanine--D-alanine ligase (ddlB) [Haemophilus influenzae Rd KW20]
 gi|260093508|gb|EEW77441.1| D-alanylalanine synthetase [Haemophilus influenzae RdAW]
          Length = 306

 Score =  352 bits (904), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 114/300 (38%), Positives = 173/300 (57%), Gaps = 10/300 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SGKA   AL   G+    ID        L     + AFN+LHG
Sbjct: 8   IAVLLGGTSAEREVSLNSGKAVLEALLKQGYNAHPIDPKEYNVANLKKDGFNRAFNILHG 67

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117
             GEDG +Q +LE + +PYT  G++ASAL+MDKMR+K +  + G+PV    +V R T   
Sbjct: 68  RGGEDGTMQGLLEQIGLPYTGCGVMASALTMDKMRTKMLWKAFGLPVADMKVVTRETFSE 127

Query: 118 MDSQHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
           +D Q +   +  P ++KP   GSS+G+  +K  + +   +  +  +   + +LIE+++ G
Sbjct: 128 LDPQAVVAKLGLPLMVKPSLEGSSVGLTKVKAVEELKSAVEYALKF--DNTILIEEWLAG 185

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
            ELT  V+ +  L    I VP+ +FY YE KY S N+ +  PA +  +  + +  L   A
Sbjct: 186 DELTVPVLDNQVLPAIRI-VPEGEFYDYEAKYISDNTQYFCPAGLTPEREQALSTLVKRA 244

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           + A+GCRG SR D + D        +E+N  PGMT  S+FP+ AA  G SF +L++ ++E
Sbjct: 245 YDAVGCRGWSRIDVMCDAKGN-FRLVEVNTNPGMTSHSLFPKSAATVGISFEQLVVKILE 303


>gi|148265982|ref|YP_001232688.1| D-alanine--D-alanine ligase [Geobacter uraniireducens Rf4]
 gi|190359135|sp|A5G8J7|DDL_GEOUR RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|146399482|gb|ABQ28115.1| D-alanine--D-alanine ligase [Geobacter uraniireducens Rf4]
          Length = 310

 Score =  352 bits (904), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 118/299 (39%), Positives = 185/299 (61%), Gaps = 6/299 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VLMGG+S+EREVSL SG A   AL   G+    IDVDR +  VL     D+AF  LHG
Sbjct: 11  IGVLMGGLSAEREVSLKSGAAVHQALLARGYDAVAIDVDRDIAQVLVREWVDVAFIALHG 70

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG +Q +LE++ IPYT SG+LASAL+M+K+ +KQ   +  + V P  +  R    +
Sbjct: 71  RYGEDGAIQGLLEIMGIPYTGSGVLASALAMNKIFAKQAFQAARLTVAPYKVFCRGDKAA 130

Query: 121 QHLISP--PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
              +    P V+KP + GSS+G+ ++KK+      + +  ++ +  ++L+EQ++ G E+ 
Sbjct: 131 LAELEFSLPVVVKPSQEGSSVGVSIVKKESEFAAAMKE--AFRYDREILVEQFIKGSEVQ 188

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
            G++ D +L   EI VPK++FY ++ KYS   + H+LPA++P ++Y++V R    AH+A+
Sbjct: 189 VGILEDKALGAIEI-VPKNEFYDFDAKYSPGMAEHILPARLPAELYRKVLRAGEDAHRAL 247

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           GC G SR DFL        + LE+N  PGMT +S+ PE+A  +G  F +L+  ++  A+
Sbjct: 248 GCSGYSRVDFLVTE-EGACYILEVNTLPGMTDLSLLPEIARGSGIGFEDLVERILAAAA 305


>gi|301169880|emb|CBW29484.1| D-alanine:D-alanine ligase [Haemophilus influenzae 10810]
          Length = 306

 Score =  352 bits (903), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 113/300 (37%), Positives = 170/300 (56%), Gaps = 10/300 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SGKA   AL   G+    ID        L     + AFN+LHG
Sbjct: 8   IAVLLGGTSAEREVSLNSGKAVLEALLKQGYNAHPIDPKEYNVANLKKDGFNRAFNILHG 67

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LE + +PYT  G++ASAL+MDKMR+K +  + G+PV    +V R T   
Sbjct: 68  RRGEDGTMQGLLEQIGLPYTGCGVMASALTMDKMRTKMLWKAFGLPVADMKVVTRETFSE 127

Query: 121 Q------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
                    +  P ++KP   GSS+G+  +K  + +   +  +  +   + +LIE+++ G
Sbjct: 128 LNPQAVVAKLGLPLMVKPSLEGSSVGLTKVKAVEELKSAVEYALKF--DNTILIEEWLAG 185

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
            ELT  V+ +  L    I VP+ +FY YE KY S N+ +  PA +  +  +E+  L   A
Sbjct: 186 DELTVPVLDNQVLPAIRI-VPEGEFYDYEAKYISDNTQYFCPAGLTPEREQELAILVKRA 244

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           + A+GCRG SR D + D        +E+N  PGMT  S+FP+ AA  G SF +L++ ++E
Sbjct: 245 YDAVGCRGWSRIDVMCDAKGN-FRLVEVNTNPGMTSHSLFPKSAATVGISFEQLVVKILE 303


>gi|302383797|ref|YP_003819620.1| D-alanine/D-alanine ligase [Brevundimonas subvibrioides ATCC 15264]
 gi|302194425|gb|ADL01997.1| D-alanine/D-alanine ligase [Brevundimonas subvibrioides ATCC 15264]
          Length = 311

 Score =  352 bits (903), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 151/304 (49%), Positives = 209/304 (68%), Gaps = 6/304 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG+SSER+VSLSSGK CA ALE  G +V+++D  R +  VLA LKPD+  N LHG
Sbjct: 10  VAVLLGGLSSERDVSLSSGKGCADALEAQGARVTRVDAGRDLAQVLAELKPDVVLNALHG 69

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG VQ ILE L+IPYTHSG+LASAL+MDK ++K V+++ GV V    L +R  + +
Sbjct: 70  EWGEDGCVQGILETLQIPYTHSGVLASALTMDKDKTKAVLNAAGVKVPGGGLFDRHAVSA 129

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            H+I PPYVIKP   GSS+G+ ++++  +   +   S SW +GD +++E Y+ G EL   
Sbjct: 130 GHVIPPPYVIKPNAEGSSVGVYLVREGDAPQPE-PGSDSWTYGDLVMVEPYIPGKELAVA 188

Query: 181 VMGD----ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           V+G+     +L VT+I  P   FY YE KY+   S H LPA +P  +++   R +  AH 
Sbjct: 189 VIGEATGPRALTVTDI-TPVKGFYDYEAKYAPGGSVHKLPADLPPHVFEAAMRESEQAHA 247

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           A+GCRG+SRSDF +D +  ++  LE+N QPGMTP S+ PE AAY G S+++L+ WMVEDA
Sbjct: 248 ALGCRGVSRSDFRYDDVKDELVLLEVNTQPGMTPTSLVPEQAAYCGMSYQDLVRWMVEDA 307

Query: 297 SCLR 300
           SC R
Sbjct: 308 SCPR 311


>gi|145637108|ref|ZP_01792771.1| D-alanylalanine synthetase [Haemophilus influenzae PittHH]
 gi|145269762|gb|EDK09702.1| D-alanylalanine synthetase [Haemophilus influenzae PittHH]
          Length = 306

 Score =  352 bits (903), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 114/300 (38%), Positives = 173/300 (57%), Gaps = 10/300 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SGKA   AL   G+    ID        L     + AFN+LHG
Sbjct: 8   IAVLLGGTSAEREVSLNSGKAVLEALLKQGYNAYPIDPKEYNVANLKKDGFNRAFNILHG 67

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117
             GEDG +Q +LE + +PYT  G++ASAL+MDKMR+K +  + G+PV    +V R T   
Sbjct: 68  RGGEDGTMQGLLEQIGLPYTGCGVMASALTMDKMRTKMLWKAFGLPVADMKVVTRETFSE 127

Query: 118 MDSQHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
           +D Q +   +  P ++KP   GSS+G+  +K  + +   +  +  +   + +LIE+++ G
Sbjct: 128 LDPQAVVAKLGLPLMVKPSLEGSSVGLTKVKAVEELKSAVEYALKF--DNTILIEEWLAG 185

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
            ELT  V+ +  L    I VP+ +FY YE KY S N+ +  PA +  +  + +  L   A
Sbjct: 186 DELTVPVLDNQVLPAIRI-VPEGEFYDYEAKYISDNTQYFCPAGLTPEREQALSTLVKRA 244

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           + A+GCRG SR D + D        +E+N  PGMT  S+FP+ AA  G SF +L++ ++E
Sbjct: 245 YDAVGCRGWSRIDVMCDAKGN-FRLVEVNTNPGMTSHSLFPKSAATVGISFEQLVVKILE 303


>gi|317046899|ref|YP_004114547.1| D-alanine/D-alanine ligase [Pantoea sp. At-9b]
 gi|316948516|gb|ADU67991.1| D-alanine/D-alanine ligase [Pantoea sp. At-9b]
          Length = 306

 Score =  352 bits (903), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 110/305 (36%), Positives = 163/305 (53%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+ER+VSL SG A  + L + G     +D      L L     D AF  LHG
Sbjct: 5   VAVLLGGTSAERDVSLMSGNAVLAGLREMGIDAHPVDTRDVSVLNLKQQGFDKAFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119
             GEDG +QA+LE  +IPYT SG++ASA++MDK+RSK +    G+P    + + R   + 
Sbjct: 65  RGGEDGTLQAVLEFQQIPYTGSGVMASAITMDKLRSKLLWQGRGLPAGKFVWLTRQQQEN 124

Query: 120 --------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P  +KP   GSS+GI  +    ++P  L  + ++ H D +L+E +
Sbjct: 125 GLDAQTLAEIDALGLPVFVKPSCEGSSVGISRVNTRDALPAAL--AEAFRHDDDVLVEAF 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T G++GD  L   +I    S+FY YE KY S ++ +  P+ +  +   E+Q L 
Sbjct: 183 LSGAEYTVGILGDQILPSIKIQ-SASEFYDYEAKYISDDTQYFCPSGLSAEREAELQALV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A +A+GC G  R D + D        LE+N  PGMT  S+ P  A  AG SF +L+  
Sbjct: 242 LAAWRALGCSGWGRVDVMVDGEDN-FQLLEVNTSPGMTSHSLVPMAAKQAGLSFPQLVAR 300

Query: 292 MVEDA 296
           ++E A
Sbjct: 301 ILELA 305


>gi|258542973|ref|YP_003188406.1| D-alanine--D-alanine ligase [Acetobacter pasteurianus IFO 3283-01]
 gi|256634051|dbj|BAI00027.1| D-alanine--D-alanine ligase [Acetobacter pasteurianus IFO 3283-01]
 gi|256637111|dbj|BAI03080.1| D-alanine--D-alanine ligase [Acetobacter pasteurianus IFO 3283-03]
 gi|256640163|dbj|BAI06125.1| D-alanine--D-alanine ligase [Acetobacter pasteurianus IFO 3283-07]
 gi|256643220|dbj|BAI09175.1| D-alanine--D-alanine ligase [Acetobacter pasteurianus IFO 3283-22]
 gi|256646275|dbj|BAI12223.1| D-alanine--D-alanine ligase [Acetobacter pasteurianus IFO 3283-26]
 gi|256649328|dbj|BAI15269.1| D-alanine--D-alanine ligase [Acetobacter pasteurianus IFO 3283-32]
 gi|256652314|dbj|BAI18248.1| D-alanine--D-alanine ligase [Acetobacter pasteurianus IFO
           3283-01-42C]
 gi|256655372|dbj|BAI21299.1| D-alanine--D-alanine ligase [Acetobacter pasteurianus IFO 3283-12]
          Length = 312

 Score =  351 bits (902), Expect = 6e-95,   Method: Composition-based stats.
 Identities = 135/307 (43%), Positives = 189/307 (61%), Gaps = 10/307 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL---KPDLAFNV 57
           + VLMGG+SSER VSLSSG+  A AL   G+ V  +D    +  ++  L   KPD+ FN 
Sbjct: 7   VTVLMGGMSSERVVSLSSGQGVAEALRSKGYDVCTLDAQADLATLVEALNTQKPDVVFNA 66

Query: 58  LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117
           LHG FGEDG +Q IL+ + IPYTHSGI ASA +MDK  ++ +  + G+PV   ++V+  T
Sbjct: 67  LHGRFGEDGCIQGILDWMGIPYTHSGIRASATAMDKAAARAIFQTAGLPVAEGMVVDIAT 126

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
           +     +  PYV+KPL  GSS+G+ +++   +   D++++  W +G Q L+E ++ G E+
Sbjct: 127 LAHADPLPTPYVVKPLNEGSSVGVSIVRTGSNTRADIVKN--WTYGPQALVEAFIPGREI 184

Query: 178 TCGVMGDASLDVTEIAVPKS--DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
           T GVMGD +L +T+I    +  DFY Y+ KY    S HVLPA+I     K    +A  AH
Sbjct: 185 TVGVMGDRALTITDITPTGTGHDFYDYDSKYQVGGSAHVLPAQIDAASAKLALEVAVKAH 244

Query: 236 QAIGCRGISRSDFLFDPLS---RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           QA+GC G SRSDF  D  +     +  LE+N QPGMT  S+ PE AAY G S+ EL  W+
Sbjct: 245 QALGCSGASRSDFRLDDTNPDQPHLILLEVNTQPGMTATSLLPEQAAYCGISYPELCAWL 304

Query: 293 VEDASCL 299
           VE A+C 
Sbjct: 305 VEQATCR 311


>gi|322834418|ref|YP_004214445.1| D-alanine/D-alanine ligase [Rahnella sp. Y9602]
 gi|321169619|gb|ADW75318.1| D-alanine/D-alanine ligase [Rahnella sp. Y9602]
          Length = 306

 Score =  351 bits (902), Expect = 6e-95,   Method: Composition-based stats.
 Identities = 103/305 (33%), Positives = 163/305 (53%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+ER+VSL SG A  + L ++G     ID       +L        F  LHG
Sbjct: 5   VAVLLGGTSAERDVSLQSGAAVLAGLRESGVDAHGIDTKTFNVALLKEEGYSKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LE + +PYT SG++ASAL+MDK R+K V  + G+PV P + ++R  ++ 
Sbjct: 65  RGGEDGTLQGLLEQIGLPYTGSGVMASALTMDKFRTKLVWQALGLPVTPFVALHRAQIEE 124

Query: 121 Q---------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P ++KP + GSS+G+  +  ++ +   L +   + H D +LIE++
Sbjct: 125 AGQGALAAKIAELGLPVIVKPSREGSSVGMSKVTTEKELLPALQE--GFRHDDNVLIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G   +    I  P   FY Y+ KY S  + +  P+ +     +++  LA
Sbjct: 183 LSGPEYTVAIVGSQVMPSIRIQ-PAGTFYDYQAKYLSDETQYFCPSGLSEAQEQQLTALA 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A+QA+ C G  R D + D        LE+N  PGMT  S+ P  A +AG SF +L+  
Sbjct: 242 LQAYQALDCSGWGRVDVMQDG-DGNFNLLEVNTSPGMTSHSLVPMAAKHAGLSFPQLVFR 300

Query: 292 MVEDA 296
           ++E A
Sbjct: 301 ILELA 305


>gi|312173520|emb|CBX81774.1| D-alanine-D-alanine ligase [Erwinia amylovora ATCC BAA-2158]
          Length = 306

 Score =  351 bits (902), Expect = 6e-95,   Method: Composition-based stats.
 Identities = 109/305 (35%), Positives = 165/305 (54%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+ER+VSL SG      L++AG     +D+       L     + AF  LHG
Sbjct: 5   VAVLLGGTSAERDVSLLSGTXVLKGLQEAGIDAYPVDIRDFPVTRLKEEGFEKAFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LE L IPYT SG++ASA++MDK+RSK +   CG+PV P + + R  MD+
Sbjct: 65  RGGEDGTLQGVLEFLNIPYTGSGVMASAITMDKLRSKYLWQGCGLPVSPFVALTRAQMDA 124

Query: 121 ---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P  +KP + GSS+GI  + +   +   L ++  ++H  ++L+E +
Sbjct: 125 GLDAQVMASIAALGLPLFVKPSREGSSVGISRVNQASELQAALEEAFRFDH--EVLVEAF 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T GV+G   L    I    S+FY Y+ KY S  + +  P+ +  D   E++ L 
Sbjct: 183 LSGPEYTVGVLGTDILPSIRIQTA-SEFYDYDAKYFSDETQYFCPSGLSADQEAELRELT 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A  A+GC G  R D +      + + LE+N  PGMT  S+ P  A  AG SF +L+  
Sbjct: 242 ISAWNALGCSGWGRVDVMM-GGDGRFYLLEVNTSPGMTSHSLVPMAAKQAGMSFSQLVAR 300

Query: 292 MVEDA 296
           ++E A
Sbjct: 301 ILELA 305


>gi|95930728|ref|ZP_01313461.1| D-alanine--D-alanine ligase [Desulfuromonas acetoxidans DSM 684]
 gi|95133208|gb|EAT14874.1| D-alanine--D-alanine ligase [Desulfuromonas acetoxidans DSM 684]
          Length = 305

 Score =  351 bits (902), Expect = 6e-95,   Method: Composition-based stats.
 Identities = 116/303 (38%), Positives = 183/303 (60%), Gaps = 8/303 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGG S+EREVSL +G A   ALE+ G+ V  ID D+++   L   + D+ F  +HG
Sbjct: 8   IGVIMGGTSAEREVSLRTGAAIVKALEECGYTVVAIDADKTLPAQLIEKQIDVVFLAVHG 67

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN---RFT 117
            FGEDG +Q +LEL++IPYT SG+LASAL++DK  +K++V+  GV    + LV+      
Sbjct: 68  RFGEDGTIQGMLELMQIPYTGSGVLASALAIDKAVTKRMVAQDGVTTPAATLVDVNSDVD 127

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
                    P V+KP++ GS+LGI +      +   + Q  + ++  ++L+E Y+DG E+
Sbjct: 128 DIVAQCGHFPQVVKPVREGSTLGIAIANNADELKQAIAQ--ARDYDRRVLVEDYIDGREV 185

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           T  VM   +L + EI VP+S FY Y  KY+   + +++PA +P   YK +Q+ A  ++ +
Sbjct: 186 TVSVMNGRALSIIEI-VPESGFYDYTAKYTVGKTRYLVPAPLPESQYKAIQQAAVASYAS 244

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           +GCRG +R DF+        ++LE+N  PGMT  S+ P+ AA  G  F +L+  +++DAS
Sbjct: 245 LGCRGAARVDFMVT--DDNFYFLEVNTIPGMTETSLLPKAAADCGMDFAKLVEGILDDAS 302

Query: 298 CLR 300
             R
Sbjct: 303 LDR 305


>gi|304321499|ref|YP_003855142.1| D-alanylalanine synthetase [Parvularcula bermudensis HTCC2503]
 gi|303300401|gb|ADM10000.1| D-alanylalanine synthetase [Parvularcula bermudensis HTCC2503]
          Length = 311

 Score =  351 bits (902), Expect = 6e-95,   Method: Composition-based stats.
 Identities = 144/306 (47%), Positives = 193/306 (63%), Gaps = 7/306 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH----LKPDLAFN 56
           + VL GG  SERE+SL SG   A AL D G+ V +IDV R +  VL      L PD  FN
Sbjct: 7   IVVLKGGWCSEREISLISGATAADALRDEGYSVEEIDVGRDLATVLPASFDRLGPDAVFN 66

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116
            LHG FGEDG VQ +LE+L IPYTHSG+L+SAL M+K R+K V++  G+ V     +   
Sbjct: 67  ALHGPFGEDGRVQGLLEILNIPYTHSGVLSSALCMNKPRAKMVLAQAGLKVPEGRTLPLN 126

Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
           ++  +H ++ PYV+KP+  GSS G+ ++  +Q +        +   G + L+E ++ G E
Sbjct: 127 SLTGRHPMAAPYVLKPIGDGSSFGVNIVMSEQEVAPKTEDLDADLFGTEALVETFIPGRE 186

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           LT  V+G  +L VTEI VPK+ FY +E KY+   STHVLPA IP ++   V+  +  A Q
Sbjct: 187 LTVSVLGAVALGVTEI-VPKNTFYDFESKYAEGGSTHVLPADIPEEVADAVKAQSLKAVQ 245

Query: 237 AIGCRGISRSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           A+GCRG+SR DF +D  S    +F LE+N QPGMTP S+ PE AA AG  F  L+ WM+E
Sbjct: 246 ALGCRGLSRVDFRWDDRSGVNGLFILEVNTQPGMTPTSLSPEQAAAAGIDFGALVRWMIE 305

Query: 295 DASCLR 300
           DASCLR
Sbjct: 306 DASCLR 311


>gi|156935388|ref|YP_001439304.1| D-alanine--D-alanine ligase [Cronobacter sakazakii ATCC BAA-894]
 gi|156533642|gb|ABU78468.1| hypothetical protein ESA_03246 [Cronobacter sakazakii ATCC BAA-894]
          Length = 306

 Score =  351 bits (902), Expect = 7e-95,   Method: Composition-based stats.
 Identities = 105/306 (34%), Positives = 164/306 (53%), Gaps = 13/306 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+ER+VSL SG A  + L++AG     +D        L     D  F  LHG
Sbjct: 5   IAVLLGGHSAERDVSLQSGSAVLAGLKEAGVDAYAVDPRDVCVTTLKEEGFDKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118
             GEDG +Q +LE L +PYT SG++ASA++MDK+R+K +    G+PV   + + R  +  
Sbjct: 65  RGGEDGTLQGMLEYLGLPYTGSGVMASAITMDKLRTKLLWQGAGLPVAQWVALERQDITG 124

Query: 119 -------DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P ++KP + GSS+G+  +   +++   L    ++ H  ++L+E++
Sbjct: 125 GLSEALSARIAALGLPVIVKPSREGSSVGMSKVDSAEALLPAL--ELAFEHDSEVLVEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++GD  L    I  P   FY YE KY S  + +  PA I     + +Q L 
Sbjct: 183 LSGPEFTVAILGDEILPSIRIQ-PAGVFYDYEAKYLSDETQYFCPAGIDAGREQALQALV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A + +GCRG  R D + D    + + LE+N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 242 MDAWRVLGCRGWGRVDVMQD-SDGEFYLLEVNTAPGMTSHSLVPMAARQAGMSFSQLVVR 300

Query: 292 MVEDAS 297
           ++E A+
Sbjct: 301 ILELAN 306


>gi|68249689|ref|YP_248801.1| D-alanine--D-alanine ligase [Haemophilus influenzae 86-028NP]
 gi|145630240|ref|ZP_01786022.1| D-alanylalanine synthetase [Haemophilus influenzae R3021]
 gi|229846171|ref|ZP_04466283.1| D-alanine--D-alanine ligase [Haemophilus influenzae 7P49H1]
 gi|260581811|ref|ZP_05849607.1| D-alanylalanine synthetase [Haemophilus influenzae NT127]
 gi|81335882|sp|Q4QLF6|DDL_HAEI8 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|68057888|gb|AAX88141.1| D-alanine--D-alanine ligase [Haemophilus influenzae 86-028NP]
 gi|144984521|gb|EDJ91944.1| D-alanylalanine synthetase [Haemophilus influenzae R3021]
 gi|229811175|gb|EEP46892.1| D-alanine--D-alanine ligase [Haemophilus influenzae 7P49H1]
 gi|260095004|gb|EEW78896.1| D-alanylalanine synthetase [Haemophilus influenzae NT127]
 gi|309973393|gb|ADO96594.1| D-alanine--D-alanine ligase [Haemophilus influenzae R2846]
          Length = 306

 Score =  351 bits (902), Expect = 7e-95,   Method: Composition-based stats.
 Identities = 114/300 (38%), Positives = 173/300 (57%), Gaps = 10/300 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVS +SGKA   AL   G+    ID        L     + AFN+LHG
Sbjct: 8   IAVLLGGTSAEREVSFNSGKAVLEALLKQGYNAHPIDPKEYNVANLKKDGFNRAFNILHG 67

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117
             GEDG +Q +LE + +PYT  G++ASAL+MDKMR+K +  + G+PV    +V R T   
Sbjct: 68  RGGEDGTMQGLLEQIGLPYTGCGVMASALTMDKMRTKMLWKAFGLPVADMKVVTRETFSE 127

Query: 118 MDSQHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
           +D Q +   +  P ++KP   GSS+G+  +K  + +   +  +  +   + +LIE+++ G
Sbjct: 128 LDPQAVVAKLGLPLMVKPSLEGSSVGLTKVKAVEELKSAVEYALKF--DNTILIEEWLAG 185

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
            ELT  V+ +  L    I VP+ +FY YE KY S N+ +  PA +  +  +E+  L   A
Sbjct: 186 DELTVPVLDNQVLPAIRI-VPEGEFYDYEAKYISDNTQYFCPAGLTPEREQELAILVKRA 244

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           + A+GCRG SR D + D        +E+N  PGMT  S+FP+ AA  G SF +L++ ++E
Sbjct: 245 YDALGCRGWSRIDVMCDAKGN-FRLVEVNTNPGMTSHSLFPKSAATVGISFEQLVVKILE 303


>gi|319776619|ref|YP_004139107.1| D-alanine:D-alanine ligase [Haemophilus influenzae F3047]
 gi|317451210|emb|CBY87443.1| D-alanine:D-alanine ligase [Haemophilus influenzae F3047]
          Length = 306

 Score =  351 bits (902), Expect = 7e-95,   Method: Composition-based stats.
 Identities = 115/300 (38%), Positives = 174/300 (58%), Gaps = 10/300 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SGKA   AL   G+    ID        L     + AFN+LHG
Sbjct: 8   IAVLLGGTSAEREVSLNSGKAVLEALLKQGYNAYPIDPKEYNVANLKKDGFNRAFNILHG 67

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117
             GEDG +Q +LE + +PYT  G++ASAL+MDKMR+K +  + G+PV    +V R T   
Sbjct: 68  RGGEDGTMQGLLEQIGLPYTGCGVMASALTMDKMRTKMLWKAFGLPVADMKVVTRETFSE 127

Query: 118 MDSQHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
           +D Q +   +  P ++KP   GSS+G+  +K  + +   +  +  +   + +LIE+++ G
Sbjct: 128 LDPQAVVAKLGLPLMVKPSLEGSSVGLTKVKAVEELKSAVEYALKF--DNTILIEEWLAG 185

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
            ELT  V+ +  L    I VP+ +FY YE KY S N+ +  PA +  +  +E+  L   A
Sbjct: 186 DELTVPVLDNQVLPAIRI-VPEGEFYDYEAKYISDNTQYFCPAGLTPEREQELAILVKRA 244

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           + A+GCRG SR D + D        +E+N  PGMT  S+FP+ AA  G SF +L++ ++E
Sbjct: 245 YDAVGCRGWSRIDVMCDAKGN-FRLVEVNTNPGMTSHSLFPKSAATVGISFEQLVVKILE 303


>gi|319408821|emb|CBI82478.1| D-alanine--D-alanine ligase [Bartonella schoenbuchensis R1]
          Length = 306

 Score =  351 bits (901), Expect = 7e-95,   Method: Composition-based stats.
 Identities = 159/301 (52%), Positives = 225/301 (74%), Gaps = 1/301 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSER VSLSSG ACA ALE  G+ V ++DVD+ +  VL  L+PD+ FN LHG
Sbjct: 6   IAVLMGGFSSERSVSLSSGTACADALEKQGYHVIRVDVDQQIATVLKQLQPDIVFNALHG 65

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG +Q ILE  +IPYTHSG++ASAL+MDK R+K +V++ GV V PS ++NRF +  
Sbjct: 66  PFGEDGCIQGILEYFKIPYTHSGVMASALAMDKGRAKVIVANAGVHVAPSCVMNRFAIGR 125

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +H + PPYVIKP++ GSS G++++  D+++PL  + SS W +GD++++E+Y+ G ELTC 
Sbjct: 126 EHPMEPPYVIKPVREGSSFGVVIVSGDEALPLCNVMSSEWVYGDEVIVEKYIPGRELTCA 185

Query: 181 VMGDASLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
           V+GD +LDV EI   K   FY Y+ KY    S H+ PA++ L+IY++VQR++  AH+AIG
Sbjct: 186 VLGDEALDVCEIVPDKHFQFYDYDSKYKLGGSLHICPAQLSLNIYQKVQRMSLAAHRAIG 245

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
           CRG+SRSDF F   + ++ WLEIN QPGMTPVS+ P++A  +G ++ +++ W+ EDASC+
Sbjct: 246 CRGVSRSDFRFVEETEELVWLEINTQPGMTPVSLVPDIAKASGRTYGDIVKWIAEDASCM 305

Query: 300 R 300
           R
Sbjct: 306 R 306


>gi|329124132|ref|ZP_08252679.1| D-alanine-D-alanine ligase B [Haemophilus aegyptius ATCC 11116]
 gi|327467557|gb|EGF13055.1| D-alanine-D-alanine ligase B [Haemophilus aegyptius ATCC 11116]
          Length = 306

 Score =  351 bits (901), Expect = 8e-95,   Method: Composition-based stats.
 Identities = 114/300 (38%), Positives = 172/300 (57%), Gaps = 10/300 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GGIS+EREVSL+SG A   AL + G+    ID        L        FN+LHG
Sbjct: 8   IAVLLGGISAEREVSLNSGNAVLEALLNQGYDAHPIDPKEYNVANLKKDGFHRVFNILHG 67

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117
             GEDG +Q +LE + +PYT  G++ASAL+MDKMR+K +  + G+PV    +V R T   
Sbjct: 68  RGGEDGTMQGLLEQIGLPYTGCGVMASALTMDKMRTKMLWKAFGLPVADMEVVTRETFSE 127

Query: 118 MDSQ---HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
           +D Q     +  P ++KP   GSS+G+  +K  + +   +  +  +   + +LIE+++DG
Sbjct: 128 LDPQSVVAKLGLPLMVKPSLEGSSVGLTKVKAVEELKSAVEYALKF--DNTILIEEWLDG 185

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
            ELT  V+ +  L    I VP+ +FY YE KY S N+ +  PA +  +  + +  L   A
Sbjct: 186 DELTVPVLDNQVLPAIRI-VPEGEFYDYEAKYISDNTQYFCPAGLTPEREQALAILVKRA 244

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           + A+GCRG SR D + D        +E+N  PGMT  S+FP+ AA  G SF +L++ ++E
Sbjct: 245 YDAVGCRGWSRIDVMCDAKGN-FRLVEVNTNPGMTSHSLFPKSAATVGISFEQLVVKILE 303


>gi|317402453|gb|EFV83022.1| D-alanine-D-alanine ligase [Achromobacter xylosoxidans C54]
          Length = 316

 Score =  351 bits (901), Expect = 8e-95,   Method: Composition-based stats.
 Identities = 116/305 (38%), Positives = 162/305 (53%), Gaps = 10/305 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VL GG S+EREVSL SG     AL  AG      D        LA    +  F  LHG
Sbjct: 8   VGVLYGGRSAEREVSLMSGAGVHQALLSAGVDAHLFDTGERSLAELAAEGFERVFIALHG 67

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG +Q  LELL IPYT SG LASAL+MDK  +K+V    G+P     L++  T   
Sbjct: 68  RFGEDGSIQGALELLGIPYTGSGPLASALAMDKTMTKRVWLQHGLPTPEFELLDADTELR 127

Query: 121 --QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                +S P +IKP   GS++GI  +     +      ++ +    ++L EQ++ G ELT
Sbjct: 128 LVPDRLSLPLIIKPPHEGSTVGITKVVGYSDMKEAYALAAKF--DAEVLAEQFIQGRELT 185

Query: 179 CGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
             ++G      +L V EIA P    Y YE KY S ++ +  PA +P  + +EV  +A  A
Sbjct: 186 VAILGGGKSARALPVIEIAAP-GGNYDYEHKYFSDDTQYFCPAALPPAVAEEVADIAVRA 244

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           ++A+GC G  R+DF+ D    + + LE+N  PGMT  S+ P  A   G S+ EL + ++ 
Sbjct: 245 YRALGCEGWGRADFMLDA-DNRPWLLEMNTSPGMTSHSLVPMAARATGMSYAELCVAILA 303

Query: 295 DASCL 299
           DASC 
Sbjct: 304 DASCK 308


>gi|329115580|ref|ZP_08244302.1| D-alanine--D-alanine ligase [Acetobacter pomorum DM001]
 gi|326695008|gb|EGE46727.1| D-alanine--D-alanine ligase [Acetobacter pomorum DM001]
          Length = 312

 Score =  351 bits (901), Expect = 9e-95,   Method: Composition-based stats.
 Identities = 135/307 (43%), Positives = 188/307 (61%), Gaps = 10/307 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---LAHLKPDLAFNV 57
           + VLMGG+SSER VSLSSG+  A AL   G+ V  +D    +  +   L   KPD+ FN 
Sbjct: 7   VTVLMGGMSSERVVSLSSGQGVAEALRSKGYDVCTLDAQADLAALVETLNTQKPDVVFNA 66

Query: 58  LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117
           LHG FGEDG +Q IL+ + IPYTHSGI ASA +MDK  ++ +  + G+PV   ++V+  T
Sbjct: 67  LHGRFGEDGCIQGILDWMGIPYTHSGIRASATAMDKAAARAIFQTAGLPVAEGMVVDIAT 126

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
           +     +  PYV+KPL  GSS+G+ +++   +   D++++  W  G Q L+E ++ G E+
Sbjct: 127 LADADPLPTPYVVKPLNEGSSVGVSIVRTGSNTRADIVKN--WTFGPQALVEAFIPGREI 184

Query: 178 TCGVMGDASLDVTEIAVPKS--DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
           T GVMGD +L +T+I    +  DFY Y+ KY    S HVLPA+I     K    +A  AH
Sbjct: 185 TVGVMGDRALTITDITPTGTGHDFYDYDSKYQVGGSAHVLPAQIDASSAKLALEVAVKAH 244

Query: 236 QAIGCRGISRSDFLFDPLSRK---VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           QA+GC G SRSDF  D  + +   +  LE+N QPGMT  S+ PE AAY G S+ EL  W+
Sbjct: 245 QALGCSGASRSDFRLDDTNPEQPHLILLEVNTQPGMTATSLLPEQAAYCGISYPELCAWL 304

Query: 293 VEDASCL 299
           VE A+C 
Sbjct: 305 VEQATCR 311


>gi|84501759|ref|ZP_00999931.1| D-alanine--D-alanine ligase [Oceanicola batsensis HTCC2597]
 gi|84390380|gb|EAQ02939.1| D-alanine--D-alanine ligase [Oceanicola batsensis HTCC2597]
          Length = 297

 Score =  350 bits (900), Expect = 9e-95,   Method: Composition-based stats.
 Identities = 139/301 (46%), Positives = 186/301 (61%), Gaps = 9/301 (2%)

Query: 5   MGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGE 64
           MGG S+EREVSLS+G+ CA+AL   G++V ++D DR +   LA L PD+ FN LHG +GE
Sbjct: 1   MGGPSAEREVSLSTGRECAAALRGEGYEVVEVDADRDLSARLADLSPDVVFNALHGRWGE 60

Query: 65  DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI 124
           DG VQ +LE + IPYTHSG+LASAL+MDK R+K V    G+P   S L  R  + S+H++
Sbjct: 61  DGCVQGVLEWMRIPYTHSGVLASALAMDKERTKGVYRQAGLPFAESCLARRSEIVSRHVM 120

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
            PPYV+KP   GSS+G+ ++ +  + P  + ++      + L++E++V G ELT  VMG 
Sbjct: 121 EPPYVVKPFNEGSSVGVYLVHEVANGPPQVDEALP----ETLMVEKFVPGRELTVSVMGT 176

Query: 185 ASLDVTEIAVPK---SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241
              D   + V +     +Y YE KY+   S HV PAKIP DI       A  AH A+GCR
Sbjct: 177 GEGDPGPLCVTEILTDGWYDYEAKYTPGGSRHVCPAKIPQDIAAACLDYARRAHVALGCR 236

Query: 242 GISRSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
           G+SR+DF +D       +  LE N QPGMTP S+ PE A   G  F  L  W+VEDASC 
Sbjct: 237 GVSRTDFRWDETRGAKGLILLETNTQPGMTPTSLTPEHAQAMGIGFGALCRWLVEDASCN 296

Query: 300 R 300
           R
Sbjct: 297 R 297


>gi|311104003|ref|YP_003976856.1| D-alanine--D-alanine ligase B [Achromobacter xylosoxidans A8]
 gi|310758692|gb|ADP14141.1| D-alanine--D-alanine ligase B [Achromobacter xylosoxidans A8]
          Length = 316

 Score =  350 bits (900), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 115/305 (37%), Positives = 162/305 (53%), Gaps = 10/305 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VL GG S+EREVSL SG     AL  AG      D        LA    D  F  LHG
Sbjct: 8   VGVLYGGRSAEREVSLMSGAGVHQALLSAGVDAHLFDTGERSLSELAAQGFDRVFIALHG 67

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG +Q  LELL IPYT SG LASAL+MDK  +K+V    G+P     L++  T   
Sbjct: 68  RYGEDGTIQGALELLGIPYTGSGPLASALAMDKTMTKRVWLQHGLPTPDFELLDADTELR 127

Query: 121 --QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                +S P +IKP   GS++GI  +     +      ++ +    ++L EQ++ G ELT
Sbjct: 128 LVPDRLSLPLIIKPPHEGSTVGITKVVGYSDMKEAYAAAARF--DAEVLAEQFITGRELT 185

Query: 179 CGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
             V+G      +L V EIA P    Y YE KY S ++ +  PA +P ++  EV  +A  A
Sbjct: 186 VAVLGGGKTARALPVIEIAAP-GGNYDYEHKYFSDDTQYFCPATLPPEVAAEVAEIAVQA 244

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           +QA+GC G  R+DF+ D    + + LE+N  PGMT  S+ P  A   G S+ +L + ++ 
Sbjct: 245 YQALGCEGWGRADFILD-RDNRPWLLEMNTSPGMTSHSLVPMAAKAVGISYADLCVAILS 303

Query: 295 DASCL 299
           +A+C 
Sbjct: 304 EAACK 308


>gi|237747014|ref|ZP_04577494.1| D-alanine-D-alanine ligase [Oxalobacter formigenes HOxBLS]
 gi|229378365|gb|EEO28456.1| D-alanine-D-alanine ligase [Oxalobacter formigenes HOxBLS]
          Length = 321

 Score =  350 bits (900), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 98/303 (32%), Positives = 167/303 (55%), Gaps = 9/303 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VL GG S+EREVSL SGKA   AL+  G      D   +    L   + D  F  LHG
Sbjct: 13  VGVLYGGKSAEREVSLVSGKAVCEALKSRGVDAHLFDTGINDPARLQDERFDRVFIALHG 72

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTM 118
            +GEDG +Q +LE ++IPYT SG+LASA++MDK+ +K++  + G+P    + +  +  + 
Sbjct: 73  RYGEDGCMQGMLEQMQIPYTGSGVLASAIAMDKIMTKRLWLAEGLPTPRYVELKADSDSG 132

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                +  P ++KP   GS+LG+  +K+   +      +S ++    +L E+++ G+ELT
Sbjct: 133 KVMAHLGLPLIVKPAHEGSTLGLTRVKQADQLADAYALASKYDRS--VLAEEFIKGMELT 190

Query: 179 CGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
           C ++       +L +  I  P ++ Y Y  KY +  + ++ P  +  +  +++++ A  +
Sbjct: 191 CAILELDGKPQTLPLIRIIAPDAN-YDYHNKYFNDKTRYLCPCGLDAETEEKIRQCALKS 249

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           +QA+GCRG  R D +      + F LE+N  PGMT  S+ P  A  AG S+ +L L +++
Sbjct: 250 YQALGCRGWGRVDVILRASDNEPFLLELNSSPGMTGHSLVPMAARQAGLSYEDLCLTLLQ 309

Query: 295 DAS 297
            A+
Sbjct: 310 SAT 312


>gi|145627890|ref|ZP_01783691.1| D-alanylalanine synthetase [Haemophilus influenzae 22.1-21]
 gi|145639340|ref|ZP_01794946.1| D-alanylalanine synthetase [Haemophilus influenzae PittII]
 gi|144979665|gb|EDJ89324.1| D-alanylalanine synthetase [Haemophilus influenzae 22.1-21]
 gi|145271643|gb|EDK11554.1| D-alanylalanine synthetase [Haemophilus influenzae PittII]
          Length = 330

 Score =  350 bits (899), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 114/300 (38%), Positives = 173/300 (57%), Gaps = 10/300 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVS +SGKA   AL   G+    ID        L     + AFN+LHG
Sbjct: 32  IAVLLGGTSAEREVSFNSGKAVLEALLKQGYNAHPIDPKEYNVANLKKDGFNRAFNILHG 91

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117
             GEDG +Q +LE + +PYT  G++ASAL+MDKMR+K +  + G+PV    +V R T   
Sbjct: 92  RGGEDGTMQGLLEQIGLPYTGCGVMASALTMDKMRTKMLWKAFGLPVADMKVVTRETFSE 151

Query: 118 MDSQHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
           +D Q +   +  P ++KP   GSS+G+  +K  + +   +  +  +   + +LIE+++ G
Sbjct: 152 LDPQAVVAKLGLPLMVKPSLEGSSVGLTKVKAVEELKSAVEYALKF--DNTILIEEWLAG 209

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
            ELT  V+ +  L    I VP+ +FY YE KY S N+ +  PA +  +  +E+  L   A
Sbjct: 210 DELTVPVLDNQVLPAIRI-VPEGEFYDYEAKYISDNTQYFCPAGLTPEREQELAILVKRA 268

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           + A+GCRG SR D + D        +E+N  PGMT  S+FP+ AA  G SF +L++ ++E
Sbjct: 269 YDAVGCRGWSRIDVMCDAKGN-FRLVEVNTNPGMTSHSLFPKSAATVGISFEQLVVKILE 327


>gi|50122735|ref|YP_051902.1| D-alanine--D-alanine ligase [Pectobacterium atrosepticum SCRI1043]
 gi|81643890|sp|Q6D0I5|DDL_ERWCT RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|49613261|emb|CAG76712.1| D-alanine--D-alanine ligase B [Pectobacterium atrosepticum
           SCRI1043]
          Length = 306

 Score =  350 bits (898), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 107/305 (35%), Positives = 166/305 (54%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL SG+A  + L++AG     +D        L        F  LHG
Sbjct: 5   VAVLLGGTSAEREVSLLSGQAVLAGLKEAGINAHAVDTRDFPVTTLKEEGFTNVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LE L +PYT SG++ASAL+MDK+R+KQV  + G+PV P + ++R     
Sbjct: 65  RGGEDGTLQGVLEFLGLPYTGSGVMASALTMDKLRTKQVWQAVGLPVSPYVALDRRQYLD 124

Query: 121 QHL---------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P ++KP + GSS+G+  +     +P  L    ++ H D +L+E++
Sbjct: 125 TEANTLLAQFTHLGLPLIVKPSREGSSVGMSKVNTLSDLPAAL--EEAFRHDDDVLVEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++GD  L    I  P   FY YE KY S ++ +  P+ +  +  + +  LA
Sbjct: 183 LSGPEYTVAILGDEVLPSIRIQ-PAGTFYDYEAKYLSDDTQYFCPSGLSDEQEQALAALA 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A++A+ C G  R DF+ D      + LE+N  PGMT  S+ P  A   G +F +L++ 
Sbjct: 242 MAAYRAVDCSGWGRVDFMLD-SDDAFYLLEVNTSPGMTSHSLVPMAARQRGLTFSQLVVK 300

Query: 292 MVEDA 296
           ++E A
Sbjct: 301 ILELA 305


>gi|148556844|ref|YP_001264426.1| D-alanine--D-alanine ligase [Sphingomonas wittichii RW1]
 gi|190359229|sp|A5VDC2|DDL_SPHWW RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|148502034|gb|ABQ70288.1| D-alanine--D-alanine ligase [Sphingomonas wittichii RW1]
          Length = 312

 Score =  350 bits (898), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 131/304 (43%), Positives = 195/304 (64%), Gaps = 5/304 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSEREVSL+SG   A ALE  G KV++ID+DR V L LA  KPD+ FN LHG
Sbjct: 7   IAVLMGGWSSEREVSLTSGNGVADALESLGHKVTRIDMDRDVALRLAEAKPDVVFNALHG 66

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG VQ +++L+ + YTHSG+  S +++DK  +KQ +   G+ +   I+V   ++ +
Sbjct: 67  TPGEDGTVQGMMDLMGLTYTHSGLTTSVIAIDKELTKQQLVPHGIRMPEGIIVESESLHA 126

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQS--IPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
              +  PYV+KP+  GSS+G+ +IK+  +  +P+       W     LL E ++ G ELT
Sbjct: 127 GDPMPRPYVLKPVNEGSSVGVAIIKERDNHGVPIHRDSHGPWQTFATLLAEPFIRGRELT 186

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             V+G+ +L VTE+ VP S FY YE KY+   +TH+ PA +P DI +   R+A  AH+ +
Sbjct: 187 VAVLGNRALGVTEL-VPSSGFYDYEAKYTDGLTTHICPADVPADIAEAAMRMALDAHRLL 245

Query: 239 GCRGISRSDFLFDPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           GC+G SRSDF +D    +  ++ LE+N QPGMTP+S+ PE A + G ++ +L+  +V++A
Sbjct: 246 GCKGTSRSDFRWDDERGEAGLYLLEVNTQPGMTPLSLVPEQARHVGLTYADLVQAIVDEA 305

Query: 297 SCLR 300
              +
Sbjct: 306 LAGK 309


>gi|161504748|ref|YP_001571860.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. arizonae
           serovar 62:z4,z23:-- str. RSK2980]
 gi|160866095|gb|ABX22718.1| hypothetical protein SARI_02871 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 306

 Score =  350 bits (898), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 108/305 (35%), Positives = 163/305 (53%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL SG A  + L + G     +D        L  +    AF  LHG
Sbjct: 5   IAVLLGGASAEREVSLESGAAVLAGLREGGIDAHPVDPKEVDVAQLKAMGFQKAFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LELL +PYT SG++ASALSMDK+RSK +    G+ V P   + R   + 
Sbjct: 65  RGGEDGTLQGMLELLGLPYTGSGVMASALSMDKLRSKLLWQGAGLLVAPWFALTRAGFEK 124

Query: 121 ---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P ++KP + GSS+G+  + ++ ++   L    ++ H D++LIE++
Sbjct: 125 GLSEEQKARISALGLPLIVKPGREGSSVGMTKVVEENALQGALAL--AFQHDDEVLIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L    I  P   FY YE KY S  + +  PA +       +Q L 
Sbjct: 183 LCGPEFTVAILGEEILPSIRIQ-PAGTFYDYEAKYLSDETQYFCPAGLEASQEAALQLLV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A +A+GC+G  R D + +    + + LE N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 242 LQAWKALGCKGWGRIDVMLN-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300

Query: 292 MVEDA 296
           ++E A
Sbjct: 301 ILELA 305


>gi|126726626|ref|ZP_01742466.1| D-alanine--D-alanine ligase [Rhodobacterales bacterium HTCC2150]
 gi|126703955|gb|EBA03048.1| D-alanine--D-alanine ligase [Rhodobacterales bacterium HTCC2150]
          Length = 304

 Score =  350 bits (898), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 141/302 (46%), Positives = 196/302 (64%), Gaps = 8/302 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VLMGG S+EREVSLSSGK CA+AL  AGF   ++D   ++   L  + PD+AFN LHG
Sbjct: 9   IVVLMGGPSAEREVSLSSGKECAAALVRAGFDTVELDAGPNLVEDLKRIAPDVAFNALHG 68

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG VQ ILE L+IPYTHSG+LASAL+MDK ++K    S G+PV  S+L  +  ++ 
Sbjct: 69  RWGEDGCVQGILEWLQIPYTHSGVLASALAMDKEKTKAAFRSVGLPVMESVLAPKAEIEG 128

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            H+++PPYV+KP+  GSS+G+ ++++  + P  L    +    + L++E Y  G ELT  
Sbjct: 129 SHVMAPPYVVKPVNEGSSVGVYLVQEGANSPPRL----APEMPEILMVETYAPGRELTTT 184

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V+GD +L VT+I      +Y Y+ KY +  S HVLPA +P +I+      A  AH  +GC
Sbjct: 185 VIGDRALTVTDILT--DGWYDYDAKYVAGGSRHVLPADVPSEIFDTCMEYAIRAHNVLGC 242

Query: 241 RGISRSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           RG+SR+DF +D       +  LE N QPGMTP S+ PE A + G SF EL+ WM+EDA+C
Sbjct: 243 RGVSRTDFRWDETRGLDGLILLETNTQPGMTPTSLSPEQAQHVGISFEELVTWMIEDATC 302

Query: 299 LR 300
            R
Sbjct: 303 NR 304


>gi|319897393|ref|YP_004135590.1| d-alanine:d-alanine ligase [Haemophilus influenzae F3031]
 gi|317432899|emb|CBY81265.1| D-alanine:D-alanine ligase [Haemophilus influenzae F3031]
          Length = 306

 Score =  349 bits (897), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 113/300 (37%), Positives = 173/300 (57%), Gaps = 10/300 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SGKA   AL   G+    ID        L     + AFN+LHG
Sbjct: 8   IAVLLGGTSAEREVSLNSGKAVLEALLKQGYNAYPIDPKEYNVANLKKDGFNRAFNILHG 67

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117
             GEDG +Q +LE + +PYT   ++ASAL+MDKMR+K +  + G+PV    +V R T   
Sbjct: 68  RGGEDGTMQGLLEQIGLPYTGCDVMASALTMDKMRTKMLWKAFGLPVADMKVVTRETFSE 127

Query: 118 MDSQHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
           +D Q +   +  P ++KP   GSS+G+  +K  + +   +  +  +   + +LIE+++ G
Sbjct: 128 LDPQAVVAKLGLPLMVKPSLEGSSVGLTKVKAVEELKSAVEYALKF--DNTILIEEWLAG 185

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
            ELT  V+ +  L    I VP+ +FY Y+ KY S N+ +  PA +  +  +E+  L   A
Sbjct: 186 DELTVPVLDNQVLPAIRI-VPEGEFYDYKAKYISDNTQYFCPAGLTPEREQELAILVKRA 244

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           + A+GCRG SR D + D        +E+N  PGMT  S+FP+ AA  G SF +L++ ++E
Sbjct: 245 YDAVGCRGWSRIDVMCDAKGN-FRLVEVNTNPGMTSHSLFPKSAATVGISFEQLVVKILE 303


>gi|309751214|gb|ADO81198.1| D-alanine--D-alanine ligase [Haemophilus influenzae R2866]
          Length = 306

 Score =  349 bits (897), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 114/300 (38%), Positives = 173/300 (57%), Gaps = 10/300 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVS +SGKA   AL   G+    ID        L     + AFN+LHG
Sbjct: 8   IAVLLGGTSAEREVSFNSGKAVLEALLKQGYNAHPIDPKEYNVANLKKDGFNRAFNILHG 67

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117
             GEDG +Q +LE + +PYT  G++ASAL+MDKMR+K +  + G+PV    +V R T   
Sbjct: 68  RGGEDGTMQGLLEQIGLPYTGCGVMASALTMDKMRTKMLWKAFGLPVADMKVVTRETFSE 127

Query: 118 MDSQHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
           +D Q +   +  P ++KP   GSS+G+  +K  + +   +  +  +   + +LIE+++ G
Sbjct: 128 LDPQAVVAKLGLPLMVKPSLEGSSVGLTKVKAVEELKSAVEYALKF--DNTILIEEWLAG 185

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
            ELT  V+ +  L    I VP+ +FY YE KY S N+ +  PA +  +  +E+  L   A
Sbjct: 186 DELTVPVLDNQVLPAIRI-VPEGEFYDYEAKYISDNTQYFCPAGLTPEREQELAILVKRA 244

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           + A+GCRG SR D + D        +E+N  PGMT  S+FP+ AA  G SF +L++ ++E
Sbjct: 245 YDAVGCRGWSRIDVMCDAKGN-FRLVEVNTNPGMTSHSLFPKSAATVGISFEQLVVKILE 303


>gi|325578819|ref|ZP_08148866.1| D-alanine-D-alanine ligase B [Haemophilus parainfluenzae ATCC
           33392]
 gi|325159643|gb|EGC71775.1| D-alanine-D-alanine ligase B [Haemophilus parainfluenzae ATCC
           33392]
          Length = 316

 Score =  349 bits (897), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 108/303 (35%), Positives = 170/303 (56%), Gaps = 10/303 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SG A  +AL   G+    ID        L     D  FN+LHG
Sbjct: 18  IAVLLGGTSAEREVSLNSGAAVLNALVSQGYNAHGIDPKEYNVANLKADGFDRVFNILHG 77

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LE + +PYT  G++ASAL+MDKMR+K +  + G+PV    +V +     
Sbjct: 78  RGGEDGTMQGLLEQIGLPYTGCGVMASALTMDKMRTKMLWKAFGLPVADMEIVTKENAHE 137

Query: 121 Q------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
                    +  P ++KP   GSS+G+  +K  + +   +  +  +   + +LIE+++ G
Sbjct: 138 LNPQAVVEKLGLPLMVKPSLEGSSVGLTKVKAVEELKSAVDYALKF--DNTILIEEWLAG 195

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
            ELT  V+G   L    I VP+ +FY Y+ KY S N+ +  PA +  +  +E+ +L   A
Sbjct: 196 DELTVPVLGGEVLPAVRI-VPEGEFYDYDAKYISDNTQYFCPAGLSAEREQELAKLVKRA 254

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           +  +GCRG SR D + D        +E+N  PGMT  S+FP+ A+  G SF +L++ ++E
Sbjct: 255 YDVVGCRGWSRIDVMTDAQGN-FRLVEVNTNPGMTSHSLFPKSASTVGISFEQLVVKILE 313

Query: 295 DAS 297
            ++
Sbjct: 314 LSA 316


>gi|152968677|ref|YP_001333786.1| D-alanine--D-alanine ligase [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|150953526|gb|ABR75556.1| D-alanylalanine synthetase [Klebsiella pneumoniae subsp. pneumoniae
           MGH 78578]
          Length = 306

 Score =  349 bits (897), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 105/305 (34%), Positives = 159/305 (52%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL+SG A  + L + G     +D        L       AF  LHG
Sbjct: 5   IAVLFGGTSAEREVSLNSGAAVLAGLREGGVDAHPVDPRDVDITQLKKQGFKKAFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LEL+++PYT SG++ASA+SMDK+RSK +    G+PV P + + R    +
Sbjct: 65  RGGEDGTLQGLLELIQLPYTGSGVMASAISMDKLRSKWLWQGAGLPVAPWVALTRAQFTA 124

Query: 121 ---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P +IKP + GSS+G+  +   +S  L    + ++ H D++L+E++
Sbjct: 125 GLSTDVEQQIAALGLPVIIKPSREGSSVGMSKVS--ESCDLASALALAFQHDDEVLVEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L    I      FY YE KY S  + +  P          +Q L 
Sbjct: 183 LSGPEFTVAIVGEEILPSIRIQAA-GTFYDYEAKYLSDETQYFCPGFEDPARESAIQNLV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A   +GC+G  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 242 LKAWNVLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300

Query: 292 MVEDA 296
           +++ A
Sbjct: 301 ILDLA 305


>gi|300309680|ref|YP_003773772.1| D-alanine-D-alanine ligase B protein [Herbaspirillum seropedicae
           SmR1]
 gi|300072465|gb|ADJ61864.1| D-alanine-D-alanine ligase B protein [Herbaspirillum seropedicae
           SmR1]
          Length = 334

 Score =  349 bits (896), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 95/309 (30%), Positives = 158/309 (51%), Gaps = 15/309 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VL GG S+EREVS+ SG     AL   G      D        L   + D  F  LHG
Sbjct: 13  VGVLFGGRSAEREVSMMSGNGVLQALRSKGVDAHPFDPAERSLGELQAEQFDRVFIALHG 72

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG +Q  LE + +PYT  G+++S+++MDK+ +K++  S G+P    + ++      
Sbjct: 73  RYGEDGTLQGALEQMGLPYTGPGVMSSSIAMDKVMTKRIWLSHGLPTPRFLTLDAQATTR 132

Query: 121 QHL------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
           + L      +  P ++K    GS++GI  +     +       +   +   +L E+++ G
Sbjct: 133 EQLRLVPDTLGLPLMLKAPHEGSTIGIAKVNGYSDMQEGFDLCA--RYDKVVLAEEFIRG 190

Query: 175 IELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            ELT  V+G      +L V EI  P+ + Y Y+ KY + ++ ++ PA +  ++ + +Q L
Sbjct: 191 RELTVPVLGTGSAARALPVIEIRAPEGN-YDYQNKYFTDDTKYLCPAPLDEELTRHLQNL 249

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           A  A  A+GCRG SR DF+   +    + + LEIN  PGMT  S+ P  A   G S+ +L
Sbjct: 250 AVQAFNALGCRGWSRVDFMLREVDGKAEPYLLEINTSPGMTGHSLVPMAAKAVGMSYEDL 309

Query: 289 LLWMVEDAS 297
              +++ A+
Sbjct: 310 CCEILQMAA 318


>gi|148828300|ref|YP_001293053.1| D-alanine--D-alanine ligase [Haemophilus influenzae PittGG]
 gi|166198486|sp|A5UIR4|DDL_HAEIG RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|148719542|gb|ABR00670.1| D-alanylalanine synthetase [Haemophilus influenzae PittGG]
          Length = 306

 Score =  349 bits (896), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 113/300 (37%), Positives = 173/300 (57%), Gaps = 10/300 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVS +SG+A   AL   G+    ID        L     + AFN+LHG
Sbjct: 8   IAVLLGGTSAEREVSFNSGRAVLEALLKQGYNAHPIDPKEYNVANLKKDGFNRAFNILHG 67

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117
             GEDG +Q +LE + +PYT  G++ASAL+MDKMR+K +  + G+PV    +V R T   
Sbjct: 68  RGGEDGTMQGLLEQIGLPYTGCGVMASALTMDKMRTKMLWKAFGLPVADMKVVTRETFSE 127

Query: 118 MDSQHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
           +D Q +   +  P ++KP   GSS+G+  +K  + +   +  +  +   + +LIE+++ G
Sbjct: 128 LDPQAVVAKLGLPLMVKPSLEGSSVGLTKVKAVEELKSAVEYALKF--DNTILIEEWLAG 185

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
            ELT  V+ +  L    I VP+ +FY YE KY S N+ +  PA +  +  +E+  L   A
Sbjct: 186 DELTVPVLDNQVLPAIRI-VPEGEFYDYEAKYISDNTQYFCPAGLTPEREQELAILVKRA 244

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           + A+GCRG SR D + D        +E+N  PGMT  S+FP+ AA  G SF +L++ ++E
Sbjct: 245 YDAVGCRGWSRIDVMCDAKGN-FRLVEVNTNPGMTSHSLFPKSAATVGISFEQLVVKILE 303


>gi|145633130|ref|ZP_01788862.1| D-alanylalanine synthetase [Haemophilus influenzae 3655]
 gi|145635591|ref|ZP_01791289.1| D-alanylalanine synthetase [Haemophilus influenzae PittAA]
 gi|229844905|ref|ZP_04465043.1| D-alanine--D-alanine ligase [Haemophilus influenzae 6P18H1]
 gi|144986356|gb|EDJ92935.1| D-alanylalanine synthetase [Haemophilus influenzae 3655]
 gi|145267153|gb|EDK07159.1| D-alanylalanine synthetase [Haemophilus influenzae PittAA]
 gi|229812286|gb|EEP47977.1| D-alanine--D-alanine ligase [Haemophilus influenzae 6P18H1]
          Length = 306

 Score =  349 bits (896), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 112/300 (37%), Positives = 169/300 (56%), Gaps = 10/300 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVS +SGKA   AL   G+    ID        L     + AFN+LHG
Sbjct: 8   IAVLLGGTSAEREVSFNSGKAVLEALLKQGYNAHPIDPKEYNVANLKKDGFNRAFNILHG 67

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LE + +PYT  G++ASAL+MDKMR+K +  + G+PV    +V R T   
Sbjct: 68  RGGEDGTMQGLLEQIGLPYTGCGVMASALTMDKMRTKMLWKAFGLPVADMKVVTRETFAE 127

Query: 121 QH------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
                    +  P ++KP   GSS+G+  +K  + +   +  +  +   + +LIE+++ G
Sbjct: 128 LDPQAVVAKLGLPLMVKPSLEGSSVGLTKVKAVEELKSAVEYALKF--DNTILIEEWLAG 185

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
            ELT  V+ +  L    I VP+ +FY YE KY S N+ +  PA +  +  +E+  L   A
Sbjct: 186 DELTVSVLDNQVLPAIRI-VPEGEFYDYEAKYISDNTQYFCPAGLTPEREQELAILVKRA 244

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           + A+GCRG SR D + D        +E+N  PGMT  S+FP+ AA  G SF +L++ ++E
Sbjct: 245 YDAVGCRGWSRIDVMCDAKGN-FRLVEVNTNPGMTSHSLFPKSAATVGISFEQLVVKILE 303


>gi|300715310|ref|YP_003740113.1| D-alanine-D-alanine ligase [Erwinia billingiae Eb661]
 gi|299061146|emb|CAX58253.1| D-alanine-D-alanine ligase [Erwinia billingiae Eb661]
          Length = 306

 Score =  349 bits (896), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 111/305 (36%), Positives = 167/305 (54%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL SG A  + L +AG     +D+     + L     D AF  LHG
Sbjct: 5   VAVLLGGTSAEREVSLMSGNAVLAGLIEAGVDAHAVDIRDFPVMRLKEEGFDKAFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LE L IPYT SG++ASA++MDK+R+K +   CG+PV P + + R  MD+
Sbjct: 65  RGGEDGTLQGVLEFLSIPYTGSGVMASAITMDKLRTKFLWQGCGLPVSPYVALTRKEMDA 124

Query: 121 ---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P  +KP   GSS+GI  +    ++   L++  ++ H D +L+E +
Sbjct: 125 GLTPETEAKIAALGLPVFVKPSCEGSSVGISRVNSADTLQAALVE--AFRHDDDVLVEAF 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  V+GD  L    I V  S+FY YE KY S ++ +  P+ +  +   E+  + 
Sbjct: 183 LSGPEYTVAVIGDEILPSIRIKVV-SEFYDYEAKYFSDDTEYFCPSGLSAEQEAELSDIV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A +A+GC G  R D +      + + LE+N  PGMT  S+ P     AG SF +L+  
Sbjct: 242 IKAWRALGCSGWGRVDVMM-GGDGQFYLLEVNTSPGMTGHSLVPMAGKQAGLSFSQLVAR 300

Query: 292 MVEDA 296
           ++E A
Sbjct: 301 ILELA 305


>gi|332288550|ref|YP_004419402.1| D-alanine-D-alanine ligase [Gallibacterium anatis UMN179]
 gi|330431446|gb|AEC16505.1| D-alanine-D-alanine ligase [Gallibacterium anatis UMN179]
          Length = 311

 Score =  349 bits (895), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 112/304 (36%), Positives = 173/304 (56%), Gaps = 11/304 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGF-KVSQIDVDRSVGLVLAHLKPDLAFNVLH 59
           +AVL+GG S+EREVSL+SG A   AL+D GF  V  ID        L        FN+LH
Sbjct: 11  IAVLLGGTSAEREVSLNSGAAVLKALQDEGFTDVHAIDPKEFPVEDLKKQGFQRVFNILH 70

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRF 116
           G  GEDG +Q +LE L IPYT  G+++SAL+MDKMR+K +  + G+PV   +++    R 
Sbjct: 71  GRGGEDGSLQGLLEQLGIPYTGCGVMSSALTMDKMRTKLLWKAVGLPVAEMVVITKETRS 130

Query: 117 TMDSQHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
            +D+Q +   +  P ++KP   GSS+G+  +KK + +   +  +    H D +LIE+++ 
Sbjct: 131 QLDAQAVVAKLGLPLMVKPSLEGSSVGLTKVKKVEELAAAVDTAL--THDDTVLIEEWLA 188

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           G E +  V+G   L    I  P  +FY Y+ KY   ++ +  P+ +  +   E++ L   
Sbjct: 189 GQEFSVPVLGGKVLPSILIK-PAGEFYDYDAKYLLDSTQYFCPSGLSEERENELRNLVKQ 247

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           A+  +GCRG SR D + D   R    +E+N  PGMT  S+FP  A   GYSF +L++ ++
Sbjct: 248 AYDIVGCRGWSRIDVMTDAQGR-FRLVEVNTNPGMTSHSLFPMAAKVVGYSFSQLVVKIL 306

Query: 294 EDAS 297
           E ++
Sbjct: 307 ELSA 310


>gi|262044864|ref|ZP_06017907.1| D-alanine-D-alanine ligase B [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259037833|gb|EEW39061.1| D-alanine-D-alanine ligase B [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 306

 Score =  349 bits (895), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 104/305 (34%), Positives = 158/305 (51%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL+SG A  + L + G     +D        L       AF  LHG
Sbjct: 5   IAVLFGGTSAEREVSLNSGAAVLAGLREGGVDAHPVDPRDVDITQLKKQGFKKAFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LEL+++PYT SG++ASA+SMDK+RSK +    G+PV P + + R    +
Sbjct: 65  RGGEDGTLQGLLELIQLPYTGSGVMASAISMDKLRSKWLWQGAGLPVAPWVALTRAQFAA 124

Query: 121 ---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P +IKP + GSS+G+  + +   +   L    ++ H D++L+E++
Sbjct: 125 GLSTDVEQQIAALGLPVIIKPSREGSSVGMSKVSERCDLASALAL--AFQHDDEVLVEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L    I      FY YE KY S  + +  P          +Q L 
Sbjct: 183 LSGPEFTVAIVGEEILPSIRIQAA-GTFYDYEAKYLSDETQYFCPGFEDPARESAIQNLV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A   +GC+G  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 242 LKAWNVLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300

Query: 292 MVEDA 296
           +++ A
Sbjct: 301 ILDLA 305


>gi|330012005|ref|ZP_08307222.1| D-ala D-ala ligase protein [Klebsiella sp. MS 92-3]
 gi|328533994|gb|EGF60646.1| D-ala D-ala ligase protein [Klebsiella sp. MS 92-3]
          Length = 306

 Score =  349 bits (895), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 105/305 (34%), Positives = 159/305 (52%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL+SG A  + L + G     +D        L       AF  LHG
Sbjct: 5   IAVLFGGTSAEREVSLNSGAAVLAGLREGGVDAHPVDPRDVDITQLKKQGFKKAFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LEL+++PYT SG++ASA+SMDK+RSK +    G+PV P + + R    +
Sbjct: 65  RGGEDGTLQGLLELIQLPYTGSGVMASAISMDKLRSKWLWQGAGLPVAPWVALTRAQFAA 124

Query: 121 ---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P +IKP + GSS+G+  +   +S  L    + ++ H D++L+E++
Sbjct: 125 GLSTDVEQQIAALGLPVIIKPSREGSSVGMSKVS--ESCDLASALALAFQHDDEVLVEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L    I      FY YE KY S  + +  P          +Q L 
Sbjct: 183 LSGPEFTVAIVGEEILPSIRIQAA-GTFYDYEAKYLSDETQYFCPGFEDPARESAIQNLV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A   +GC+G  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 242 LKAWNVLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300

Query: 292 MVEDA 296
           +++ A
Sbjct: 301 ILDLA 305


>gi|306844327|ref|ZP_07476919.1| D-alanine--D-alanine ligase [Brucella sp. BO1]
 gi|306275399|gb|EFM57140.1| D-alanine--D-alanine ligase [Brucella sp. BO1]
          Length = 308

 Score =  348 bits (894), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 177/303 (58%), Positives = 230/303 (75%), Gaps = 3/303 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSER VSLSSG ACA+ LE+ G++V++IDVDR+V  VLA LKPD+ FN LHG
Sbjct: 6   VAVLMGGFSSERSVSLSSGAACATTLEECGYRVTRIDVDRNVASVLAELKPDVVFNALHG 65

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG +Q +LE L+IPYTHSG+LASAL+MDK R+K+V ++ GV V PS L+NRF + S
Sbjct: 66  PFGEDGAIQGVLEYLQIPYTHSGVLASALAMDKDRAKKVAAAAGVVVAPSRLMNRFDIGS 125

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           QH + PPYV+KP++ GSS G++++K+DQ  P  ++ S+ W +GD++++E Y+ G ELTC 
Sbjct: 126 QHPMKPPYVVKPVREGSSFGVVIVKEDQPHPPQVIGSADWKYGDEVMVEGYIAGRELTCA 185

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           VMGD ++DV EI      FY Y+ KY +  STHV PAKI  +IY+++Q +A  AH+AIGC
Sbjct: 186 VMGDRAMDVCEIIPVGYQFYDYDSKYVAGASTHVCPAKILPNIYQKIQTMALTAHRAIGC 245

Query: 241 RGISRSDFLFDP---LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           RG+SRSDF FD       +V WLEIN QPGMTP S+ P++A  AG SF ELL WMVEDAS
Sbjct: 246 RGVSRSDFRFDDRFSEEGEVVWLEINTQPGMTPTSLVPDIAKAAGISFAELLSWMVEDAS 305

Query: 298 CLR 300
           CLR
Sbjct: 306 CLR 308


>gi|37527516|ref|NP_930860.1| D-alanine--D-alanine ligase [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|39930824|sp|Q7N149|DDL_PHOLL RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|36786951|emb|CAE16025.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetase)
           (D-Ala-D-Ala ligase) [Photorhabdus luminescens subsp.
           laumondii TTO1]
          Length = 306

 Score =  348 bits (894), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 106/305 (34%), Positives = 168/305 (55%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL SG+A  + L +AG     +D        L     +  F  LHG
Sbjct: 5   VAVLLGGTSAEREVSLLSGQAVLAGLREAGIDAHPVDTKDFPVTQLKEAGFEKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LE L++PYT SG++ASALSMDK+R+KQV    G+ V P + +N   ++ 
Sbjct: 65  RGGEDGTLQGVLEFLQLPYTGSGVMASALSMDKLRTKQVWQGIGLTVSPYVSINSQQVER 124

Query: 121 Q---------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P ++KP   GSS+G+  + +   +   L   +++ +   LL+E++
Sbjct: 125 LTDSQLQEYVADLGLPLIVKPSLEGSSVGMTKVNEISELRGAL--EAAFRYDVDLLVEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++GD +L    I  P + FY Y+ KY S  + +  P+ +  +  +++  LA
Sbjct: 183 LHGPEYTVAILGDTALPSIRIQ-PAAVFYDYDAKYWSEETQYFCPSGLSDEKEQQLAELA 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A+Q++GC G  R D + D      + LE+N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 242 LKAYQSVGCSGWGRVDVMMDT-DGDFYLLEVNTSPGMTSHSLVPMAARQAGLSFSQLVVK 300

Query: 292 MVEDA 296
           ++E A
Sbjct: 301 ILELA 305


>gi|238893072|ref|YP_002917806.1| D-alanine--D-alanine ligase [Klebsiella pneumoniae NTUH-K2044]
 gi|238545388|dbj|BAH61739.1| D-alanylalanine synthetase [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
          Length = 306

 Score =  348 bits (894), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 105/305 (34%), Positives = 159/305 (52%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL+SG A  + L + G     +D        L       AF  LHG
Sbjct: 5   IAVLFGGTSAEREVSLNSGAAVLAGLREGGVDAHPVDPRDVDITQLKKQGFKKAFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LEL+++PYT SG++ASA+SMDK+RSK +    G+PV P + + R    +
Sbjct: 65  RGGEDGTLQGLLELIQLPYTGSGVMASAISMDKLRSKWLWQGAGLPVAPWVALTRAQFAA 124

Query: 121 ---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P +IKP + GSS+G+  +   +S  L    + ++ H D++L+E++
Sbjct: 125 GLSTDVEQQIAALGLPVIIKPSREGSSVGMSKVS--ESCDLASALALAFQHDDEVLVEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L    I      FY YE KY S  + +  P          +Q L 
Sbjct: 183 LSGPEFTVAIVGEEILPSIRIQAA-GTFYDYEAKYLSDETQYFCPGFKDPARESAIQNLV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A   +GC+G  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 242 LKAWNVLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300

Query: 292 MVEDA 296
           +++ A
Sbjct: 301 ILDLA 305


>gi|332283267|ref|YP_004415178.1| D-alanine--D-alanine ligase [Pusillimonas sp. T7-7]
 gi|330427220|gb|AEC18554.1| D-alanine--D-alanine ligase [Pusillimonas sp. T7-7]
          Length = 315

 Score =  348 bits (894), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 111/305 (36%), Positives = 164/305 (53%), Gaps = 10/305 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VL GG S+EREVSL SG+    AL   G      D  R   + L +   D  F  LHG
Sbjct: 8   VGVLYGGRSAEREVSLMSGQGVFEALRSVGVDAHLFDTGRYTLVDLINAGFDRVFIALHG 67

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--M 118
            +GEDG +Q  LEL+ +PYT SG LAS+L+MDK+ +KQV    G+P     ++   T   
Sbjct: 68  RYGEDGTLQGALELMGLPYTGSGTLASSLAMDKIMTKQVWLQQGLPTPRYAILRPDTDLA 127

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
               ++  P +IKP   GS+LG+  +    S+      ++ ++    +L EQ++ G ELT
Sbjct: 128 SVAAVLDLPLIIKPPHEGSTLGVTKVDGLDSLREAYQLAARYDAD--VLAEQFIVGRELT 185

Query: 179 CGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
             ++G      +L V EI  P  + Y YE KY S ++ ++ PAK+   +   ++++A  A
Sbjct: 186 VALLGGGGSARALPVIEIVAPDGN-YDYEHKYISNDTQYICPAKLDDALSASIRQIAEQA 244

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           + A+GC G  R+DF+ D    K + LEIN  PGMT  S+ P  A   G S+ EL L ++ 
Sbjct: 245 YVALGCEGWGRADFMLDEA-GKPWLLEINTSPGMTSHSLVPMAAKADGMSYAELCLEILS 303

Query: 295 DASCL 299
            ASC 
Sbjct: 304 TASCK 308


>gi|86137674|ref|ZP_01056251.1| D-alanine--D-alanine ligase [Roseobacter sp. MED193]
 gi|85826009|gb|EAQ46207.1| D-alanine--D-alanine ligase [Roseobacter sp. MED193]
          Length = 296

 Score =  348 bits (894), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 137/301 (45%), Positives = 194/301 (64%), Gaps = 8/301 (2%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGN 61
           AVL+GG S+EREVSLSSG+ CA+AL   G++V ++D    + + L  +KPD+ FN LHG 
Sbjct: 2   AVLLGGPSAEREVSLSSGRECAAALRGEGYEVVELDAGPDLYVQLTAIKPDVVFNALHGR 61

Query: 62  FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ 121
           +GEDG VQ +LE + +PYTHSG+LASAL+MDK RSK V    G+P+  S L ++  + + 
Sbjct: 62  WGEDGCVQGLLEWMGLPYTHSGVLASALAMDKQRSKMVFHEAGLPIMESGLYDKDAVMAD 121

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
           H+++PPYV+KP   GSS+GI ++ +  + P  L    S     ++L+E +  G EL+  V
Sbjct: 122 HVMAPPYVVKPNNEGSSVGIYLVHEAANGPPQL----SPEMPQEVLVEAFAPGRELSVSV 177

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241
           +GD +L VT+I      +Y Y+ KY    S HV+PA+IP++I       A  AH+A+GCR
Sbjct: 178 LGDRALAVTDILT--DGWYDYDAKYKPGGSRHVIPAEIPVEIRDLCLDYALRAHRALGCR 235

Query: 242 GISRSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
           G+SR+D  +D       +  LE N QPGMTP S+ PE AA+ G SF  L  W+VE+ASC 
Sbjct: 236 GLSRTDIRWDESKGADGLILLETNNQPGMTPTSLAPEQAAHCGLSFGALCAWLVEEASCG 295

Query: 300 R 300
           R
Sbjct: 296 R 296


>gi|301155888|emb|CBW15357.1| D-alanine:D-alanine ligase [Haemophilus parainfluenzae T3T1]
          Length = 306

 Score =  348 bits (893), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 108/303 (35%), Positives = 172/303 (56%), Gaps = 10/303 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SG A  +AL   G+    ID        L     D  FN+LHG
Sbjct: 8   IAVLLGGTSAEREVSLNSGAAVLNALVSQGYNAHGIDPKEYNVANLKADGFDRVFNILHG 67

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LE + +PYT  G++ASAL+MDKMR+K +  + G+PV    +V +   + 
Sbjct: 68  RGGEDGTMQGLLEQIGLPYTGCGVMASALTMDKMRTKMLWKAFGLPVADMEIVTKENANE 127

Query: 121 Q------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
                    +  P ++KP   GSS+G+  +K  + +   +  +  +   + +LIE+++ G
Sbjct: 128 LNPQAVVEKLGLPLMVKPSLEGSSVGLTKVKAVEELKSAVDYALKF--DNTILIEEWLAG 185

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
            ELT  V+G   L    I VP+ +FY Y+ KY S N+ +  PA + ++  +E+ +L   A
Sbjct: 186 DELTVPVLGGEVLPAVRI-VPEGEFYDYDAKYISDNTQYFCPAGLSVEREQELAKLVKRA 244

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           +  +GCRG SR D + D        +E+N  PGMT  S+FP+ A+  G SF +L++ ++E
Sbjct: 245 YDVVGCRGWSRIDVMTDAQGN-FRLVEVNTNPGMTSHSLFPKSASTVGISFEQLVVKILE 303

Query: 295 DAS 297
            ++
Sbjct: 304 LSA 306


>gi|254488243|ref|ZP_05101448.1| D-alanine--D-alanine ligase [Roseobacter sp. GAI101]
 gi|214045112|gb|EEB85750.1| D-alanine--D-alanine ligase [Roseobacter sp. GAI101]
          Length = 292

 Score =  348 bits (893), Expect = 7e-94,   Method: Composition-based stats.
 Identities = 140/298 (46%), Positives = 188/298 (63%), Gaps = 8/298 (2%)

Query: 5   MGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGE 64
           MGG S+EREVSLSSG+ACA+AL D  F V ++D    +   L  + PD+  N LHG +GE
Sbjct: 1   MGGPSAEREVSLSSGRACAAALRDRNFDVVEVDAGPDLCADLRAVAPDVVLNCLHGRWGE 60

Query: 65  DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI 124
           DG VQ ILE + IPY+HSG+LASAL+MDK RSK V  + G+PV  SI+     + + H++
Sbjct: 61  DGCVQGILEWMHIPYSHSGVLASALAMDKQRSKDVFRTVGLPVVESIIALASDVRAGHVM 120

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
           +PPYV+KP   GSS+G+ ++  + + P  L  +      D +++EQ+  G ELT  VMG 
Sbjct: 121 APPYVVKPNNEGSSVGVYLVDVENNGPPQLDDN----MPDYVMVEQFAAGRELTTTVMGQ 176

Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244
            +L VT+I    + +Y Y+ KY    STH++PA IP DI+      A  AH A+GCRG+S
Sbjct: 177 RALTVTDILT--TGWYDYDAKYKEGGSTHIVPADIPQDIFDLCLDYALRAHNALGCRGVS 234

Query: 245 RSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           R+DF +D       +  LE N QPGMTP S+ PE A   G SF +L  WMVEDASC R
Sbjct: 235 RTDFRWDESRGVDGLILLETNTQPGMTPTSLSPEQAQAVGISFGDLCAWMVEDASCHR 292


>gi|319406003|emb|CBI79634.1| D-alanine--D-alanine ligase [Bartonella sp. AR 15-3]
          Length = 306

 Score =  347 bits (892), Expect = 8e-94,   Method: Composition-based stats.
 Identities = 158/301 (52%), Positives = 223/301 (74%), Gaps = 1/301 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG+SSER VSLSSG ACA  LE  G+ V+++DVD  +  +L  L+P + FN LHG
Sbjct: 6   IAVLMGGLSSERSVSLSSGSACADVLEAHGYYVTRVDVDSRIASILEKLQPHIVFNALHG 65

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
           +FGEDG +Q ILE L+IPYTHSG++ASAL+MDK R+K + +S G+P+ PS  ++RF + S
Sbjct: 66  SFGEDGCIQGILEYLKIPYTHSGVMASALAMDKGRAKIIAASVGIPIAPSYTMSRFAIGS 125

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +H + PPYVIKP+  GSS GII++  D++ P   + SS W H D++++E+Y+ G ELTC 
Sbjct: 126 KHPLEPPYVIKPVHEGSSFGIIIVNGDEAFPPRNIASSEWMHEDEVMVEKYIPGRELTCA 185

Query: 181 VMGDASLDVTEIAVP-KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
           V+G+  LDV EI       FY+Y+ KY S  S H+ PA++ L+IY++VQR++  AHQAIG
Sbjct: 186 VLGNEVLDVCEIIPDQHFQFYNYDSKYKSGGSIHICPAQLSLNIYQKVQRISLAAHQAIG 245

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
           CRGISRSDF F+  + ++ WLEIN QPGMTP S+ P++A  +G ++ +++ W+VEDASC+
Sbjct: 246 CRGISRSDFRFNEETEELIWLEINTQPGMTPTSLVPDIAKASGRTYSDIVKWIVEDASCM 305

Query: 300 R 300
           R
Sbjct: 306 R 306


>gi|319764370|ref|YP_004128307.1| d-alanine/d-alanine ligase [Alicycliphilus denitrificans BC]
 gi|330826589|ref|YP_004389892.1| D-alanine/D-alanine ligase [Alicycliphilus denitrificans K601]
 gi|317118931|gb|ADV01420.1| D-alanine/D-alanine ligase [Alicycliphilus denitrificans BC]
 gi|329311961|gb|AEB86376.1| D-alanine/D-alanine ligase [Alicycliphilus denitrificans K601]
          Length = 322

 Score =  347 bits (892), Expect = 8e-94,   Method: Composition-based stats.
 Identities = 106/303 (34%), Positives = 161/303 (53%), Gaps = 9/303 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG S+EREVSL SG     AL   G      D   +    L        F  LHG
Sbjct: 16  VAVLMGGDSAEREVSLMSGGGVLQALRARGVDAHAFDPAHADLSELKTHGYQRCFIALHG 75

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG VQ  LELL IPYT  G++AS+++MDK+ +K++    G+P     LV+     +
Sbjct: 76  RHGEDGTVQGALELLGIPYTGPGVMASSIAMDKIMTKRIWRFEGLPTPDWRLVSSSAETA 135

Query: 121 Q--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           Q    +  P ++KP + GS++G+  +            ++   H  ++L EQ++DG E T
Sbjct: 136 QAFQELGSPMIVKPSREGSTIGLTKVTSLGQCEQAYRLAA--QHDPEVLCEQFIDGDETT 193

Query: 179 CGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
           C V+G      +L V  I  P+ + Y Y+ KY +  + +  P+ +P    +E++R+   A
Sbjct: 194 CPVLGQGDAAQALPVIRIVAPEGN-YDYQNKYFTDVTQYHCPSGLPEAEEREIRRIVVQA 252

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           ++ +GCRG +R+D +     RK F LEIN  PGMT  S+ P  A  +G S+ +L L ++ 
Sbjct: 253 YRTLGCRGWARADIMVRKSDRKPFLLEINTSPGMTGHSLVPMSAKASGISYPDLCLRILA 312

Query: 295 DAS 297
            AS
Sbjct: 313 SAS 315


>gi|293603446|ref|ZP_06685871.1| D-alanine-D-alanine ligase B [Achromobacter piechaudii ATCC 43553]
 gi|292818148|gb|EFF77204.1| D-alanine-D-alanine ligase B [Achromobacter piechaudii ATCC 43553]
          Length = 316

 Score =  347 bits (892), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 114/305 (37%), Positives = 161/305 (52%), Gaps = 10/305 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VL GG S+EREVSL SGK    AL  AG      D        LA    D  F  LHG
Sbjct: 8   VGVLYGGRSAEREVSLMSGKGVQQALASAGVDAHLFDTGERSLAELAAEGFDRVFIALHG 67

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG +Q  LELL IPYT SG +ASAL+MDK  +K++    G+P     +++  T   
Sbjct: 68  RYGEDGTIQGALELLGIPYTGSGPMASALAMDKTMTKRLWLQVGLPTPEFEVLDADTELR 127

Query: 121 --QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                +S P +IKP   GS++GI  +     +      ++ +     +L EQ++ G ELT
Sbjct: 128 LVPDRLSLPLIIKPPHEGSTVGITKVVGYSDMKEAYAAAARF--DSVVLAEQFIIGRELT 185

Query: 179 CGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
             V+G      +L V EIA P    Y YE KY S ++    PA +P  + +EV  +A  A
Sbjct: 186 VAVLGSGKGARALPVIEIAAP-GGNYDYEHKYFSDDTQFFCPATLPDGVAEEVAEIAVKA 244

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           +QA+GC G  R+DF+ D    + + LE+N  PGMT  S+ P  A   G S+ +L + ++ 
Sbjct: 245 YQALGCEGWGRADFILD-RDNRPWLLEMNTSPGMTSHSLVPMAAKAVGISYADLCVSILS 303

Query: 295 DASCL 299
           +ASC 
Sbjct: 304 EASCK 308


>gi|241765424|ref|ZP_04763394.1| D-alanine/D-alanine ligase [Acidovorax delafieldii 2AN]
 gi|241364829|gb|EER59802.1| D-alanine/D-alanine ligase [Acidovorax delafieldii 2AN]
          Length = 337

 Score =  347 bits (891), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 107/303 (35%), Positives = 163/303 (53%), Gaps = 9/303 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG S+EREVSL SG     AL   G      D        L        F  LHG
Sbjct: 16  VAVLMGGASAEREVSLMSGAGVLQALRSRGVDAHAFDPAERDLGELRREGFARCFIALHG 75

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTM 118
             GEDG VQ  LELL IPYT  G++AS++SMDK+ +K++  + G+P     LV     T+
Sbjct: 76  RHGEDGTVQGALELLGIPYTGPGVMASSMSMDKIMTKRIWRAEGLPTPDWRLVASVEETV 135

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           ++   +  P ++KP + GS++G+  +           Q+S   +  ++L EQ+++G E T
Sbjct: 136 EALETLGAPMIVKPSREGSTIGLSKVFSPDECAKAYEQAS--RYDPEVLCEQFIEGDETT 193

Query: 179 CGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
           C V+G+     +L V  I  P+ + Y Y+ KY + ++ +  P+ +P    +E+QRL   A
Sbjct: 194 CPVLGEGAGAHALPVIRIVAPQGN-YDYQNKYFTDDTQYHCPSGLPEAQEREIQRLVVQA 252

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            + +GCRG +R+D +     RK F LEIN  PGMT  S+ P  A   G S+ +L + ++ 
Sbjct: 253 FRTLGCRGWARADIMIRACDRKPFLLEINTSPGMTGHSLVPMSARALGISYEDLCVGLLA 312

Query: 295 DAS 297
            A+
Sbjct: 313 TAT 315


>gi|329298861|ref|ZP_08256197.1| D-alanine--D-alanine ligase [Plautia stali symbiont]
          Length = 306

 Score =  347 bits (891), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 113/305 (37%), Positives = 166/305 (54%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG S+EREVSL SG A  + L + G     +D      L L       AF  LHG
Sbjct: 5   VAVLMGGTSAEREVSLMSGSAVLAGLREMGIDAHGVDTRDVSVLDLWQQGFAKAFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119
             GEDG +QA+LE L++PYT SG++ASA++MDK+RSK +    G+P    + + R   + 
Sbjct: 65  RGGEDGTLQALLEFLQLPYTGSGVMASAITMDKLRSKLLWQGRGLPAGKFVWLTRQQYEQ 124

Query: 120 --------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                   S   +  P  +KP   GSS+GI  + + +++P  L +  ++ H D +L+E +
Sbjct: 125 GLDASAQASIAALGLPLFVKPSCEGSSVGISRVNQAEALPAALQE--AFRHDDDVLVEAF 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T G++GD  L    I    S+FY YE KY S ++ +  P+ +  +   E+Q L 
Sbjct: 183 LSGAEYTVGIVGDEILPSIRIQTA-SEFYDYEAKYISDDTQYFCPSGLSAEKEAELQTLV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A +A+GC G  R D + D        LE+N  PGMT  S+ P  A  AGYSF +L+  
Sbjct: 242 LAAWRALGCSGWGRVDVMVDG-DGNFQLLEVNTSPGMTSHSLVPMAAKQAGYSFPQLVAR 300

Query: 292 MVEDA 296
           ++E A
Sbjct: 301 ILELA 305


>gi|255261595|ref|ZP_05340937.1| D-alanine--D-alanine ligase B [Thalassiobium sp. R2A62]
 gi|255103930|gb|EET46604.1| D-alanine--D-alanine ligase B [Thalassiobium sp. R2A62]
          Length = 306

 Score =  347 bits (890), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 138/302 (45%), Positives = 191/302 (63%), Gaps = 8/302 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+ GG S+EREVSLSSG  CA+ L + G++V ++D    + + LA  +PD+ FN LHG
Sbjct: 11  IVVIKGGPSAEREVSLSSGFECATGLRENGYEVIEVDAGHDLFVHLAEHQPDVVFNALHG 70

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG VQ ILE ++IPYTHSG+LASAL+MDK RSKQV    G+PV  S LV++     
Sbjct: 71  RWGEDGCVQGILEWMQIPYTHSGVLASALAMDKQRSKQVFVEAGLPVVESRLVSKEAAQV 130

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            H++  PYVIKP   GSS+G+ +++   + P  L         D++++E +  G ELT  
Sbjct: 131 SHVLDVPYVIKPNNEGSSVGVYLVEDGANGPPTLGDE----MPDEVMVEAFAPGRELTTT 186

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V+GD +L VT+I      +Y Y+ KY    S HVLPA IP +I+      A  AH A+GC
Sbjct: 187 VLGDRALTVTDIIT--DGWYDYDAKYVEGGSRHVLPADIPSEIHDACLDYALRAHVALGC 244

Query: 241 RGISRSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           RG +R+DF +D       +  LE N QPGMTP S+ PE AA+ G SF +L+ W++EDA+C
Sbjct: 245 RGATRTDFRWDEARGIDGLILLETNTQPGMTPTSLVPEQAAHVGISFPDLMRWIIEDATC 304

Query: 299 LR 300
            R
Sbjct: 305 NR 306


>gi|152979584|ref|YP_001345213.1| D-alanine--D-alanine ligase [Actinobacillus succinogenes 130Z]
 gi|171704373|sp|A6VQN1|DDL_ACTSZ RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|150841307|gb|ABR75278.1| D-alanine--D-alanine ligase [Actinobacillus succinogenes 130Z]
          Length = 307

 Score =  347 bits (890), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 109/300 (36%), Positives = 170/300 (56%), Gaps = 10/300 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG +SEREVSL+SG A   AL   G+    +D        L     +  FN+LHG
Sbjct: 9   IAVLLGGTASEREVSLNSGAAVLDALRSQGYDAHPVDPKDMPVADLKQQGFERVFNILHG 68

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG++Q +LE + +PYT  G++ SAL+MDKMR+K +    G+P+    +V + T  S
Sbjct: 69  RGGEDGVIQGVLEQIGLPYTGCGVMTSALTMDKMRTKMLWKGFGLPIADMEIVTKNTALS 128

Query: 121 QHL------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
                    +  P ++KP + GSS+G+  +     +   +  +  +   D +LIE+++ G
Sbjct: 129 LEPQAIVARLGLPLMVKPSREGSSVGLTKVDSADKLKSAVDLALKF--DDIVLIEEWLSG 186

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
            ELT  V+GD  L   +I VP+ +FY Y  KY S N+ ++ P  +  + + E++ L   A
Sbjct: 187 DELTVPVLGDEVLPAVQI-VPEGEFYDYNAKYISDNTRYICPMPMSDERWDELKNLVKRA 245

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           ++A+GCRG SR D + D        +E+N  PGMT  S+FP+ AA  GYSF +L+  ++E
Sbjct: 246 YEAVGCRGWSRIDVMTDSEGN-FRLIEVNTTPGMTSHSLFPKSAATVGYSFEKLVEKILE 304


>gi|288937136|ref|YP_003441195.1| D-alanine/D-alanine ligase [Klebsiella variicola At-22]
 gi|290512559|ref|ZP_06551925.1| D-alanine-D-alanine ligase [Klebsiella sp. 1_1_55]
 gi|288891845|gb|ADC60163.1| D-alanine/D-alanine ligase [Klebsiella variicola At-22]
 gi|289774900|gb|EFD82902.1| D-alanine-D-alanine ligase [Klebsiella sp. 1_1_55]
          Length = 306

 Score =  347 bits (890), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 106/305 (34%), Positives = 162/305 (53%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL+SG A  + L + G     +D        L +L    AF  LHG
Sbjct: 5   IAVLFGGTSAEREVSLNSGAAVLAGLREGGVDAHPVDPRDIDITQLKNLGFKKAFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +L+L+++PYT SG++ASALSMDK+RSK +    G+PV P + + R    +
Sbjct: 65  RGGEDGTLQGLLDLIQLPYTGSGVMASALSMDKLRSKWLWQGAGLPVAPWVALTRAQFTA 124

Query: 121 ---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P +IKP + GSS+G+  + +   +P  L    ++ H D++L+E++
Sbjct: 125 GLSAAVEQQIAALGLPVIIKPSREGSSVGMSKVSESCDLPSALAL--AFQHDDEVLVEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L    I      FY YE KY S  + +  P         ++Q L 
Sbjct: 183 LSGPEFTVAIVGEEILPSIRIQAA-GTFYDYEAKYLSDETQYFCPGFEDPARESDIQSLV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A   +GC+G  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 242 LKAWNVLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300

Query: 292 MVEDA 296
           +++ A
Sbjct: 301 ILDLA 305


>gi|253699160|ref|YP_003020349.1| D-alanine/D-alanine ligase [Geobacter sp. M21]
 gi|259645167|sp|C6DZK9|DDL_GEOSM RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|251774010|gb|ACT16591.1| D-alanine/D-alanine ligase [Geobacter sp. M21]
          Length = 305

 Score =  347 bits (890), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 128/297 (43%), Positives = 190/297 (63%), Gaps = 5/297 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG+S+EREVSL+SGKA  ++L   GF+   IDV R +   LA  K ++AF  LHG
Sbjct: 11  IAVLMGGLSAEREVSLNSGKAVLASLVRQGFQAVGIDVGRDLPQRLAEEKAEVAFIALHG 70

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG VQ +LEL+ IPYT SG+LASAL++DK+ SK + +S G+ + P  ++ R   + 
Sbjct: 71  RFGEDGSVQGLLELMGIPYTGSGVLASALAIDKIASKVIFASAGLTLAPYQVLRRGE-EF 129

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +     P V+KP + GSS+G+ +++    +   L +  ++ +  ++LIE ++DG E+  G
Sbjct: 130 KLANPLPVVVKPSREGSSVGVGIVRDPSRMQAALDE--AFRYDSEILIEGFIDGREVQVG 187

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           ++   +L   EI VPK +FY YE KY+   + H+LPA++P  +Y EV R    AH A+GC
Sbjct: 188 ILDGKALGAIEI-VPKGEFYDYEAKYTDGGAQHILPARLPEAVYGEVLRQGEKAHAALGC 246

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
              SR DFL    +   F LE+N  PGMT +S+ PE+A  AG +F EL+L +++ AS
Sbjct: 247 DCYSRVDFLVTE-TGDCFLLEVNTLPGMTDLSLLPEIAGGAGITFGELVLRILQAAS 302


>gi|163855004|ref|YP_001629302.1| D-alanine--D-alanine ligase [Bordetella petrii DSM 12804]
 gi|190359114|sp|A9I4V9|DDL_BORPD RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|163258732|emb|CAP41031.1| D-alanine-D-alanine ligase [Bordetella petrii]
          Length = 326

 Score =  346 bits (889), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 111/305 (36%), Positives = 158/305 (51%), Gaps = 10/305 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VL GG S+ER+VSL SGK    AL  AG      D        LA    D  F  LHG
Sbjct: 18  VGVLYGGRSAERDVSLMSGKGVHQALLSAGVDAHLFDTGERTLAELAAAGFDRVFIALHG 77

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118
            +GEDG +Q  LELL +PYT SG +AS+LSMDK+ +K+V    G+      +++      
Sbjct: 78  RYGEDGTLQGALELLGLPYTGSGPMASSLSMDKIMTKRVWLQHGLRTPAFEVLDAQAELR 137

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                +  P ++KP   GS++GI  +     +     Q++ +   D++L EQ++ G ELT
Sbjct: 138 TVPDRLGLPLILKPPHEGSTVGITKVAGYSDMKEGYAQAAKF--DDEVLAEQFIAGRELT 195

Query: 179 CGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
             V+G      +L V EI  P    Y YE KY S  + +  PA +P  +  EV  LA  A
Sbjct: 196 VAVLGTGAAAHALPVIEIVAP-GGNYDYEHKYFSDETQYFCPADLPDAVAAEVADLAVRA 254

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           ++A+GC G  R DF+ D    + + LE N  PGMT  S+ P  A   G S+ EL + +V 
Sbjct: 255 YRALGCAGWGRIDFMLDA-DNRPWLLEANTSPGMTSHSLVPMAAKAIGMSYAELCVSIVS 313

Query: 295 DASCL 299
           +A+C 
Sbjct: 314 EAACK 318


>gi|222053884|ref|YP_002536246.1| D-alanine/D-alanine ligase [Geobacter sp. FRC-32]
 gi|221563173|gb|ACM19145.1| D-alanine/D-alanine ligase [Geobacter sp. FRC-32]
          Length = 308

 Score =  346 bits (889), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 120/299 (40%), Positives = 182/299 (60%), Gaps = 6/299 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VLMGG S+EREVSL SG A   AL   G+    IDVDR+V   +     + AF  LHG
Sbjct: 9   IGVLMGGFSAEREVSLKSGAAVLKALVGLGYNAVGIDVDRNVATKIVAEGINAAFIALHG 68

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG +Q +LEL+ IPYT SG+LASAL+M+K+ +KQ   + G+ V P  +V R  +  
Sbjct: 69  RYGEDGAIQGLLELMAIPYTGSGVLASALAMNKIFAKQAFQAAGLTVAPYRVVCRGEVFD 128

Query: 121 QH--LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                   P V+KP + GSS+G+ +++++  +   +    ++ +  ++LIEQ++ G E+ 
Sbjct: 129 AKTFTFPFPVVVKPSQEGSSVGVSIVRQESELEAAMQD--AFKYDREILIEQFIKGAEVQ 186

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
            G++ D +L   EI VPK +FY +E KYS   + H+LPA++P D+Y++V R     H+A+
Sbjct: 187 VGILEDKALGAIEI-VPKKEFYDFEAKYSPGMAEHILPARLPADLYEKVLRAGEEGHRAL 245

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           GC G SR DFL        + LE+N  PGMT +S+ PE+A  +G  F EL+  ++  A+
Sbjct: 246 GCSGYSRVDFLVTT-EGLCYILEVNTLPGMTDLSLLPEIARGSGIEFGELVERLISAAT 303


>gi|121595959|ref|YP_987855.1| D-alanine--D-alanine ligase [Acidovorax sp. JS42]
 gi|190359106|sp|A1WC04|DDL_ACISJ RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|120608039|gb|ABM43779.1| D-alanine--D-alanine ligase [Acidovorax sp. JS42]
          Length = 332

 Score =  346 bits (889), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 107/303 (35%), Positives = 162/303 (53%), Gaps = 9/303 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG S+EREVSL SG     AL   G      D   S    L        F  LHG
Sbjct: 16  VAVLMGGTSAEREVSLMSGGGVLQALRSRGVDAHAFDPAHSDLSELKAHGYSRCFIALHG 75

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG VQ  LELL IPYT  G++AS+++MDK+ +K++  + G+P     LV+     +
Sbjct: 76  RHGEDGTVQGALELLGIPYTGPGVMASSIAMDKIMTKRIWRADGLPTPDWRLVSSSAETA 135

Query: 121 Q--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           Q    +  P ++KP + GS++G+  +            ++   H  ++L EQ++DG E T
Sbjct: 136 QAFQELGAPMIVKPSREGSTIGLTKVTSLGQCEQAYRLAA--QHDPEVLCEQFIDGDETT 193

Query: 179 CGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
           C ++G      +L V  I  P+ + Y Y+ KY +  + +  P+ +P    +E+QR+   A
Sbjct: 194 CPILGQGTEARALPVIRIEAPQGN-YDYQNKYFTDVTQYHCPSGLPEAEEREIQRIVVQA 252

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           ++ +GCRG +R+D +     RK F LEIN  PGMT  S+ P  A  +G S+ +L L ++ 
Sbjct: 253 YRTLGCRGWARADIMIRASDRKPFLLEINTSPGMTGHSLVPMSANASGISYPDLCLRILA 312

Query: 295 DAS 297
            AS
Sbjct: 313 SAS 315


>gi|322421359|ref|YP_004200582.1| D-alanine/D-alanine ligase [Geobacter sp. M18]
 gi|320127746|gb|ADW15306.1| D-alanine/D-alanine ligase [Geobacter sp. M18]
          Length = 305

 Score =  346 bits (889), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 118/297 (39%), Positives = 191/297 (64%), Gaps = 5/297 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG+S+EREVSL+SGKA  ++L   G++   IDV R +   LA  + + AF  LHG
Sbjct: 11  IAVLMGGLSAEREVSLNSGKAVLASLVRQGYQAVGIDVGRDLPQRLAEEQVERAFIALHG 70

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG VQ +LEL+ IPYT SG+LASAL++DK+ +K + ++ G+ + P  +++R   + 
Sbjct: 71  RFGEDGSVQGLLELMAIPYTGSGVLASALAIDKIAAKTMFAAAGLKLAPYQVLSRGE-EL 129

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +     P V+KP + GSS+G+ ++++ Q +   L  + ++ +  ++LIE ++DG E+  G
Sbjct: 130 KLANPLPVVVKPSREGSSVGVSIVREPQQMEKAL--AEAFRYDSEILIEAFIDGKEVQVG 187

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           ++   ++   EI VPK++FY YE KY+   + H+LPA++P  +Y+ V +    AH A+GC
Sbjct: 188 ILDGRAMGAIEI-VPKNEFYDYEAKYTDGGAEHILPARLPEQVYQAVLKEGEKAHAALGC 246

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
              SR DFL +    + + LE+N  PGMT +S+ PE+A  +G  F +L+  ++  AS
Sbjct: 247 DCYSRVDFLVNEA-GECYLLEVNTLPGMTDLSLLPEIARGSGIDFDQLVQRILLAAS 302


>gi|87199158|ref|YP_496415.1| D-alanine--D-alanine ligase [Novosphingobium aromaticivorans DSM
           12444]
 gi|123490034|sp|Q2G992|DDL_NOVAD RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|87134839|gb|ABD25581.1| D-alanine--D-alanine ligase [Novosphingobium aromaticivorans DSM
           12444]
          Length = 313

 Score =  346 bits (889), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 124/300 (41%), Positives = 188/300 (62%), Gaps = 5/300 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSER VSL SG+  A ALE  G +V++ID+DR V L LA  KPD+ FN LHG
Sbjct: 8   VAVLMGGWSSERPVSLMSGEGVAKALESKGHQVTRIDMDRDVALRLAEAKPDVVFNALHG 67

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +++++ + YTHSG++ S +++DK  +KQ +   G+P+    +V    +  
Sbjct: 68  TPGEDGSIQGLMDIMGLTYTHSGLVTSVIAIDKELTKQALVPHGIPMPGGRMVKTADLYK 127

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSI--PLDLLQSSSWNHGDQLLIEQYVDGIELT 178
              +  PYV+KP+  GSS+G+ ++  + +   P+       W   DQLL E ++ G ELT
Sbjct: 128 ADPLPRPYVLKPVNEGSSVGVAIVTAEGNYGSPISAASKGPWQEFDQLLAEPFIRGRELT 187

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             V+GD +L VTE+  PKS FY ++ KY+   + H+ PA+IP +I +  + +A  AH+ +
Sbjct: 188 TAVIGDRALLVTELR-PKSGFYDFDAKYTEGMTDHICPAEIPDEITEACKDIALRAHRLL 246

Query: 239 GCRGISRSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           GC+G SRSDF +D       +F LE+N QPGMTP+S+ PE A   G  + +L+  ++ +A
Sbjct: 247 GCKGTSRSDFRWDDEQGVEGLFLLEVNTQPGMTPLSLVPEQARALGMDYSDLVEAIIAEA 306


>gi|206579559|ref|YP_002240436.1| D-alanine--D-alanine ligase B [Klebsiella pneumoniae 342]
 gi|206568617|gb|ACI10393.1| D-alanine--D-alanine ligase B [Klebsiella pneumoniae 342]
          Length = 306

 Score =  346 bits (889), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 105/305 (34%), Positives = 161/305 (52%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL+SG A  + L + G     +D        L +L    AF  LHG
Sbjct: 5   IAVLFGGTSAEREVSLNSGAAVLAGLREGGVDAHPVDPRDIDITQLKNLGFKKAFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +L+L+++PYT SG++ASALSMDK+RSK +    G+PV P + + R    +
Sbjct: 65  RGGEDGTLQGLLDLIQLPYTGSGVMASALSMDKLRSKWLWQGAGLPVAPWVALTRAQFTA 124

Query: 121 ---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P +IKP + GSS+G+  + +   +   L    ++ H D++L+E++
Sbjct: 125 GLSAAVEQQIAALGLPVIIKPSREGSSVGMSKVSESCDLQSALAL--AFQHDDEVLVEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L    I      FY YE KY S  + +  P         ++Q L 
Sbjct: 183 LSGPEFTVAIVGEEILPSIRIQAA-GTFYDYEAKYLSDETQYFCPGFEDPARESDIQSLV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A   +GC+G  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 242 LKAWNVLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300

Query: 292 MVEDA 296
           +++ A
Sbjct: 301 ILDLA 305


>gi|222112147|ref|YP_002554411.1| d-alanine--d-alanine ligase [Acidovorax ebreus TPSY]
 gi|254767729|sp|B9MFR0|DDL_ACIET RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|221731591|gb|ACM34411.1| D-alanine/D-alanine ligase [Acidovorax ebreus TPSY]
          Length = 332

 Score =  346 bits (888), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 107/303 (35%), Positives = 162/303 (53%), Gaps = 9/303 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG S+EREVSL SG     AL   G      D   S    L        F  LHG
Sbjct: 16  VAVLMGGTSAEREVSLMSGGGVLQALRSRGVDAHAFDPAHSDLSELKAHGYSRCFIALHG 75

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG VQ  LELL IPYT  G++AS+++MDK+ +K++  + G+P     LV+     +
Sbjct: 76  RHGEDGTVQGALELLGIPYTGPGVMASSIAMDKIMTKRIWRADGLPTPDWRLVSSSAETA 135

Query: 121 Q--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           Q    +  P ++KP + GS++G+  +            ++   H  ++L EQ++DG E T
Sbjct: 136 QAFQELGAPMIVKPSREGSTIGLTKVTSLGQCEQAYRLAA--QHDPEVLCEQFIDGDETT 193

Query: 179 CGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
           C ++G      +L V  I  P+ + Y Y+ KY +  + +  P+ +P    +E+QR+   A
Sbjct: 194 CPILGQGAEARALPVIRIEAPQGN-YDYQNKYFTDVTQYHCPSGLPEAEEREIQRIVVQA 252

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           ++ +GCRG +R+D +     RK F LEIN  PGMT  S+ P  A  +G S+ +L L ++ 
Sbjct: 253 YRTLGCRGWARADIMIRASDRKPFLLEINTSPGMTGHSLVPMSANASGISYPDLCLRILA 312

Query: 295 DAS 297
            AS
Sbjct: 313 SAS 315


>gi|187930155|ref|YP_001900642.1| D-alanine--D-alanine ligase [Ralstonia pickettii 12J]
 gi|229485977|sp|B2UCX5|DDL_RALPJ RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|187727045|gb|ACD28210.1| D-alanine/D-alanine ligase [Ralstonia pickettii 12J]
          Length = 331

 Score =  346 bits (888), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 103/303 (33%), Positives = 161/303 (53%), Gaps = 9/303 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VLMGG S+ERE+SL SG    +AL   G      D        LA    D     LHG
Sbjct: 20  VGVLMGGRSAEREISLMSGNGVLAALRARGVDAHAFDPGLQAVADLAKQGFDRVVISLHG 79

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTM 118
            FGEDG +Q +LE   IPYT SG+LASAL+MDK  +K+   + G+P    ++++      
Sbjct: 80  RFGEDGTIQGLLEQFGIPYTGSGVLASALAMDKEATKRQWQTHGLPTPDFVMLHAGADWQ 139

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                +  P ++KP + GSS+G+  +     +P    +++  +    ++ EQ+++G ELT
Sbjct: 140 AVADRLGLPLIVKPAREGSSIGLTKVTSVAELPAAYEKAARLDRD--VMAEQFIEGDELT 197

Query: 179 CGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
           C ++G+     +L +  I  P+++ Y Y+ KY + ++ +  PA IP D+   VQ L   A
Sbjct: 198 CPIIGEGESATALPLIRIVAPQAN-YDYQNKYFTDDTRYECPAPIPADVAARVQALVVQA 256

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           ++ +GCRG  R+D +        F LE+N  PGMT  S+ P  A  AG S+ + +L +  
Sbjct: 257 YRGLGCRGWGRADIMLRKSDNAPFLLEMNTSPGMTGHSLVPMGARAAGISYEDFVLQLAA 316

Query: 295 DAS 297
            AS
Sbjct: 317 SAS 319


>gi|254460833|ref|ZP_05074249.1| D-alanine--D-alanine ligase [Rhodobacterales bacterium HTCC2083]
 gi|206677422|gb|EDZ41909.1| D-alanine--D-alanine ligase [Rhodobacteraceae bacterium HTCC2083]
          Length = 292

 Score =  346 bits (888), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 137/298 (45%), Positives = 190/298 (63%), Gaps = 8/298 (2%)

Query: 5   MGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGE 64
           MGG S+EREVS SSG+ACA+AL + G++V+++D    +   L  + PD+ FN LHG  GE
Sbjct: 1   MGGPSAEREVSFSSGRACAAALREHGYQVTEMDAGADLATRLIAIAPDVVFNALHGRLGE 60

Query: 65  DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI 124
           DG VQ +LE L+IPYTHSG+LASAL+MDK RSK+V +  G+P+  SI+V    + ++H++
Sbjct: 61  DGCVQGVLEWLQIPYTHSGVLASALAMDKQRSKEVFAQVGLPIVKSIIVPAADVRARHVM 120

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
             PYV+KP   GSS+G+ ++ +  + P  L  +      + +++E +  G ELT  VMGD
Sbjct: 121 DAPYVVKPNSEGSSVGVYLVNEAANGPPQLDGT----MPEMVMVEAFAPGRELTTTVMGD 176

Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244
             L VT+I      +Y Y+ KY    S HV+PA+IP +I+      A  AH+A+GCRG+S
Sbjct: 177 RPLTVTDILT--DGWYDYDAKYKEGGSRHVVPAQIPQEIWDACMDYAVRAHEALGCRGVS 234

Query: 245 RSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           R+DF +D       +  LE N QPGMT  S+ PE A   G SF EL  WMVEDASC R
Sbjct: 235 RTDFRWDESRGLAGLILLETNTQPGMTATSLSPEQAQAIGMSFSELCSWMVEDASCNR 292


>gi|77361417|ref|YP_340992.1| D-alanine-D-alanine ligase B, affects cell division
           [Pseudoalteromonas haloplanktis TAC125]
 gi|123587864|sp|Q3IFY2|DDL_PSEHT RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|76876328|emb|CAI87550.1| D-alanine-D-alanine ligase B, affects cell division
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 306

 Score =  345 bits (887), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 105/298 (35%), Positives = 158/298 (53%), Gaps = 7/298 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL SG+A  +AL++ G      D        L  L  D  F  LHG
Sbjct: 11  VAVLLGGNSAEREVSLRSGQAVLNALQNHGINAIAFDPKERPLWELNELAIDRVFIALHG 70

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN-RFTMD 119
             GEDG VQ  LE + +PYT S +L SAL+MDK+R K +  S G+   P  +V+ +   D
Sbjct: 71  RGGEDGTVQGALEFMNLPYTGSNVLGSALAMDKVRCKHLFKSAGLSTAPYTVVDAKKGFD 130

Query: 120 SQHLISP--PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
           +  ++      ++KP   GSS+G+      Q +   L  S+++    Q+L+EQ++ G E 
Sbjct: 131 AAAIMQQFKKVMVKPSHEGSSIGMAQASTPQELEDAL--SNAFKFDSQVLVEQWISGREF 188

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           T  V+GD  L V E+  P + FY Y+ KY +  + +  PA +     + +Q +A  A   
Sbjct: 189 TITVLGDEVLPVIEMTTP-NGFYDYQAKYQATTTQYHCPADLSPADTEHLQAMALDAFDL 247

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           +G  G  R D + D      + LE+N  PGMT  S+ P  A   G SF +L++ ++E 
Sbjct: 248 VGASGWGRVDAMQDQQGN-FYLLEVNTVPGMTEKSLVPMAAKAHGASFEQLVVRILEQ 304


>gi|197116892|ref|YP_002137319.1| D-alanine--D-alanine ligase [Geobacter bemidjiensis Bem]
 gi|226696387|sp|B5EBQ4|DDL_GEOBB RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|197086252|gb|ACH37523.1| D-alanine--D-alanine ligase [Geobacter bemidjiensis Bem]
          Length = 305

 Score =  345 bits (887), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 127/297 (42%), Positives = 190/297 (63%), Gaps = 5/297 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG+S+EREVSL+SGKA  ++L   GF+   IDV R +   LA  + +LAF  LHG
Sbjct: 11  IAVLMGGLSAEREVSLNSGKAVLASLVKQGFRAVGIDVGRDLPQRLAEEQVELAFIALHG 70

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG VQ +LEL+ IPYT SG+LASAL++DK+ SK + +S G+ + P  ++ R   + 
Sbjct: 71  RFGEDGSVQGLLELMGIPYTGSGVLASALAIDKIASKVIFASAGLKLAPYQVLRRGE-EL 129

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +     P V+KP + GSS+G+ +++    +   L +  ++ +  ++LIE ++DG E+  G
Sbjct: 130 KLANPLPVVVKPSREGSSVGVGIVRDPSRMQAALDE--AFRYDSEILIEGFIDGREVQVG 187

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           ++   +L   EI +PK +FY YE KY+   + H+LPA++P  +Y EV R    AH A+GC
Sbjct: 188 ILNGKALGAIEI-IPKGEFYDYEAKYTDGGAQHILPARLPEAVYAEVLRQGEKAHAALGC 246

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
              SR DFL    +   F LE+N  PGMT +S+ PE+A  AG +F EL+L +++ AS
Sbjct: 247 DCYSRVDFLVTE-TGDCFLLEVNTLPGMTDLSLLPEIAGGAGIAFGELVLRILQAAS 302


>gi|163746137|ref|ZP_02153496.1| D-alanine--D-alanine ligase [Oceanibulbus indolifex HEL-45]
 gi|161380882|gb|EDQ05292.1| D-alanine--D-alanine ligase [Oceanibulbus indolifex HEL-45]
          Length = 293

 Score =  345 bits (887), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 139/299 (46%), Positives = 191/299 (63%), Gaps = 9/299 (3%)

Query: 5   MGGISSEREVSLSSGKACASALED-AGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFG 63
           MGG S+EREVSLSSG+ACA+AL +  G+ V +++ DR +  VL  LKP    N LHG +G
Sbjct: 1   MGGPSAEREVSLSSGRACAAALREHGGYNVIEVEADRDLAAVLTDLKPYAVLNCLHGRWG 60

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
           EDG VQ +LE L IPYTHSG+LASAL+MDK RSK V    G+PV  SI+  +  + + H+
Sbjct: 61  EDGSVQGLLEWLHIPYTHSGVLASALAMDKQRSKDVFRHAGLPVLESIIAPKADVMASHV 120

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           ++PPYV+KP   GSS+G+ ++ ++ + P  L +    +   ++++E +  G ELT  VMG
Sbjct: 121 MAPPYVVKPNNEGSSVGVYLVAEENNGPPQLSE----DMPAEVMVETFAPGRELTTTVMG 176

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D +L VT+I    + +Y Y+ KY    S HV+PA +P +I       A  AH+A+GC+G+
Sbjct: 177 DRALGVTDIIT--TGWYDYDAKYKPGGSRHVVPADLPQEITDLCFDYARRAHEALGCKGV 234

Query: 244 SRSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           SR+DF +D       +  LE N QPGMT  S+ PE A   G SF EL  WMVEDASC R
Sbjct: 235 SRTDFRWDAARGAEGLILLETNTQPGMTATSLSPEQAVACGISFPELCAWMVEDASCDR 293


>gi|300702964|ref|YP_003744566.1| d-alanine-d-alanine ligase b, affects cell division [Ralstonia
           solanacearum CFBP2957]
 gi|299070627|emb|CBJ41922.1| D-alanine-D-alanine ligase B, affects cell division [Ralstonia
           solanacearum CFBP2957]
          Length = 331

 Score =  345 bits (887), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 100/303 (33%), Positives = 160/303 (52%), Gaps = 9/303 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V++GG S+ERE+SL SG    +AL   G      D        LA          LHG
Sbjct: 20  VGVILGGRSAEREISLLSGNGVLAALRSRGVDAHPFDPGTQPVAELATQGFHRVVISLHG 79

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTM 118
            FGEDG +Q +LE   IPYT SG+LASAL+MDK  +K++  + G+P    ++++      
Sbjct: 80  RFGEDGTIQGLLEQFGIPYTGSGVLASALAMDKEATKRLWQTHGLPTPDFVMLHAGADWQ 139

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                +  P ++KP + GSS+G+  +     +P    +++  +    ++ EQ+++G ELT
Sbjct: 140 AVADRLGLPLIVKPAREGSSIGLTKVTSVAELPAAYEKAARLDRD--VMAEQFIEGDELT 197

Query: 179 CGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
           C V+G+     +L +  I  P+++ Y Y+ KY + ++ +  PA IP D+   VQ L   A
Sbjct: 198 CAVIGEGDSTTALPLIRIVAPQAN-YDYQHKYFTDDTRYECPAPIPADVAARVQALVVQA 256

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           ++ +GCRG  R+D +        F LE+N  PGMT  S+ P  A   G S+ + +L +  
Sbjct: 257 YRGLGCRGWGRADIMLRKHDNAPFLLEMNTSPGMTGHSLVPMAARAVGISYEDFVLQLAA 316

Query: 295 DAS 297
            AS
Sbjct: 317 TAS 319


>gi|309783023|ref|ZP_07677742.1| D-alanine--D-alanine ligase (D-alanylalanine
           synthetase)(D-Ala-D-Ala ligase) [Ralstonia sp.
           5_7_47FAA]
 gi|308918131|gb|EFP63809.1| D-alanine--D-alanine ligase (D-alanylalanine
           synthetase)(D-Ala-D-Ala ligase) [Ralstonia sp.
           5_7_47FAA]
          Length = 331

 Score =  345 bits (887), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 102/303 (33%), Positives = 160/303 (52%), Gaps = 9/303 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VLMGG S+ERE+SL SG    +AL   G      D        LA    D     LHG
Sbjct: 20  VGVLMGGRSAEREISLMSGNGVLAALRARGVDAHPFDPGLQPVADLAKQGFDRVVISLHG 79

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTM 118
            FGEDG +Q +LE   IPYT SG+LASAL+MDK  +K+   + G+P    ++++      
Sbjct: 80  RFGEDGTIQGLLEQFGIPYTGSGVLASALAMDKEATKRQWQTHGLPTPDFVMLHAGADWQ 139

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                +  P ++KP + GSS+G+  +     +P    +++  +    ++ EQ+++G ELT
Sbjct: 140 AVADRLGLPLIVKPAREGSSIGLTKVTSVAELPAAYEKAARLDRD--VMAEQFIEGDELT 197

Query: 179 CGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
           C ++G+     +L +  I  P+++ Y Y+ KY + ++ +  PA I  D+   VQ L   A
Sbjct: 198 CPIIGEGESATALPLIRIVAPQAN-YDYQNKYFTDDTRYECPAPIAADVAARVQALVVQA 256

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           ++ +GCRG  R+D +        F LE+N  PGMT  S+ P  A  AG S+ + +L +  
Sbjct: 257 YRGLGCRGWGRADIMLRKSDNAPFLLEMNTSPGMTGHSLVPMGARAAGISYEDFVLQLAA 316

Query: 295 DAS 297
            AS
Sbjct: 317 SAS 319


>gi|189423736|ref|YP_001950913.1| D-alanine/D-alanine ligase [Geobacter lovleyi SZ]
 gi|229485956|sp|B3E3X9|DDL_GEOLS RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|189419995|gb|ACD94393.1| D-alanine/D-alanine ligase [Geobacter lovleyi SZ]
          Length = 313

 Score =  345 bits (887), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 119/300 (39%), Positives = 186/300 (62%), Gaps = 7/300 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VLMGG+S+ER+VSL SG A   AL   G+  + +DV  +V L+L   K DLAF  LHG
Sbjct: 11  IGVLMGGLSAERDVSLKSGMAVHQALLAMGYDSTALDVRHNVALILREEKIDLAFIALHG 70

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG +Q +LEL++IPYT SG+LASAL+M K+ SKQ  ++ G+ + P   V +    +
Sbjct: 71  RYGEDGCIQGLLELMQIPYTGSGVLASALAMHKLYSKQAFAAAGLTITPYATVRQGDRCN 130

Query: 121 QHLISP--PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
              +    P V+KP++ GSS+G+ ++KK + +   L +  ++ +   +L+E+Y+ G E+ 
Sbjct: 131 AEQLPFGLPVVVKPVQEGSSVGVTIVKKPEDLQAALDE--AFRYDTLVLVEKYIKGQEVQ 188

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
            G++ +  +   EI VPK++FY +E KYS   + H+ PA++   +Y++VQ+    AHQA+
Sbjct: 189 VGILANQPIGAIEI-VPKNEFYDFEAKYSDGMAEHIFPARLAEPLYQKVQQQGLQAHQAL 247

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY-AGYSFRELLLWMVEDAS 297
           GC G  R DFL    +   + LE+N  PGMT +S+ PE+A   AG SF  L+  +   A+
Sbjct: 248 GCDGYCRVDFLVTE-NGDCYLLEVNTLPGMTALSLLPEIAQKGAGLSFEALVEQIACSAA 306


>gi|221065140|ref|ZP_03541245.1| D-alanine/D-alanine ligase [Comamonas testosteroni KF-1]
 gi|220710163|gb|EED65531.1| D-alanine/D-alanine ligase [Comamonas testosteroni KF-1]
          Length = 323

 Score =  345 bits (886), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 106/299 (35%), Positives = 160/299 (53%), Gaps = 9/299 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSEREVSL SG    +AL+  G    + D        L     D  F  LHG
Sbjct: 16  VAVLMGGRSSEREVSLMSGTGVLAALQSKGVDAHKFDPAEQGLDQLKAQGFDRCFIALHG 75

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG VQ  LELL+IPYT SG++AS+++MDK+ +K++    G+P     +V+      
Sbjct: 76  RYGEDGTVQGALELLDIPYTGSGVMASSIAMDKIMTKRIWRFEGLPTPDWRMVDSAEATR 135

Query: 121 QHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
             L  +  P ++KP + GSS+G+  +            ++   +  ++L EQ++ G E T
Sbjct: 136 AALQALGAPMIVKPARDGSSIGLTKVMDADECARAYELAA--QYDAEVLCEQFIAGDETT 193

Query: 179 CGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
           C V+G      +L V  I  P+ + Y Y+ KY +  + +  P+ +P     E+QR+   A
Sbjct: 194 CPVLGTGAKAAALPVIRIVAPEGN-YDYQNKYFTDTTQYHCPSGLPAAEEAEIQRIVEKA 252

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            + +GCRG +R+D +     RK F LEIN  PGMT  S+ P  A  +G S+  L L ++
Sbjct: 253 FRTLGCRGWARADIMIRASDRKPFLLEINTSPGMTGHSLVPMAARASGVSYENLCLGIL 311


>gi|254719459|ref|ZP_05181270.1| D-alanine--D-alanine ligase [Brucella sp. 83/13]
 gi|265984465|ref|ZP_06097200.1| D-alanine-D-alanine ligase B [Brucella sp. 83/13]
 gi|306839238|ref|ZP_07472055.1| D-alanine--D-alanine ligase [Brucella sp. NF 2653]
 gi|264663057|gb|EEZ33318.1| D-alanine-D-alanine ligase B [Brucella sp. 83/13]
 gi|306405785|gb|EFM62047.1| D-alanine--D-alanine ligase [Brucella sp. NF 2653]
          Length = 308

 Score =  345 bits (886), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 175/303 (57%), Positives = 230/303 (75%), Gaps = 3/303 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSER VSLSSG ACA+ LE+ G++V++IDVDR+V  +LA LKPD+ FN LHG
Sbjct: 6   VAVLMGGFSSERSVSLSSGAACATTLEECGYRVTRIDVDRNVASILAELKPDVVFNALHG 65

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FG+DG +Q +LE L+IPYTHSG+LASAL+MDK R+K+V ++ GV V PS L+NRF + S
Sbjct: 66  PFGKDGAIQGVLEYLQIPYTHSGVLASALAMDKDRAKKVAAAAGVVVAPSRLMNRFDIGS 125

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           QH + PPYV+KP++ GSS G++++K+DQ  P  ++ S+ W +GD++++E Y+ G ELTC 
Sbjct: 126 QHPMKPPYVVKPVREGSSFGVVIVKEDQPHPPQVIGSADWKYGDEVMVEGYIAGRELTCA 185

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           VMGD ++DV EI      FY Y+ KY +  STHV PAKI  +IY+++Q +A  AH+AIGC
Sbjct: 186 VMGDRAMDVCEIIPVGYQFYDYDSKYVAGASTHVCPAKILPNIYQKIQTMALTAHRAIGC 245

Query: 241 RGISRSDFLFDP---LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           RG+SRSDF FD       +V WLEIN QPGMTP S+ P++A  AG SF ELL WMVEDAS
Sbjct: 246 RGVSRSDFRFDDRFSEEGEVVWLEINTQPGMTPTSLVPDIAKAAGISFAELLSWMVEDAS 305

Query: 298 CLR 300
           CLR
Sbjct: 306 CLR 308


>gi|288958926|ref|YP_003449267.1| D-alanine-D-alanine ligase [Azospirillum sp. B510]
 gi|288911234|dbj|BAI72723.1| D-alanine-D-alanine ligase [Azospirillum sp. B510]
          Length = 335

 Score =  345 bits (886), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 134/305 (43%), Positives = 208/305 (68%), Gaps = 8/305 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVG---LVLAHLKPDLAFNV 57
           +AVLMGG S+EREVSL SG   A ALE+ G++V+ IDV R +G     L + +PD+ FN 
Sbjct: 29  VAVLMGGWSAEREVSLVSGAGVAKALEEEGYRVTAIDVQRDLGGLMQALTNPRPDVVFNA 88

Query: 58  LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117
           LHG  GEDG +Q +LE L +PYTHSG+ A+A++MDK  +K+++ + G+     ++++R  
Sbjct: 89  LHGRGGEDGTIQGVLEFLGLPYTHSGVQAAAIAMDKAMTKRLLDTVGIRSPKGMVLSRGE 148

Query: 118 MDSQ-HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
           +    H +  PY++KP+  GS++G+ ++++ Q+ P+    S     G+++L+E+++ G E
Sbjct: 149 IAGGVHPMPAPYIVKPVDEGSTVGVTLVREGQNSPVGDDGSFGATFGERVLVEEFIPGRE 208

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           LT GVMGD +L VTEI   ++  Y Y  KYS+ ++ H LPA IP  + +E +R+A LAHQ
Sbjct: 209 LTVGVMGDRALTVTEIVF-QAQVYDYTAKYSAGHAVHTLPAAIPEAVAEEAKRVAVLAHQ 267

Query: 237 AIGCRGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            +GCRG+SRSDF +D     +  +++LEIN QPGMTP+S+ PE AA+ G ++  L+ W+V
Sbjct: 268 TLGCRGVSRSDFRWDDSRPGTDGLYFLEINNQPGMTPLSLVPEQAAHVGITYGALVGWLV 327

Query: 294 EDASC 298
           E+A+C
Sbjct: 328 ENAAC 332


>gi|148559516|ref|YP_001259321.1| D-alanine--D-alanine ligase [Brucella ovis ATCC 25840]
 gi|148370773|gb|ABQ60752.1| D-alanine--D-alanine ligase B [Brucella ovis ATCC 25840]
          Length = 308

 Score =  345 bits (886), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 176/303 (58%), Positives = 230/303 (75%), Gaps = 3/303 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSER VSLSSG ACA+ LE+ G++V++IDVDR+V  +L  LKPD+ FN LHG
Sbjct: 6   VAVLMGGFSSERSVSLSSGVACATTLEECGYRVTRIDVDRNVASILVELKPDVVFNALHG 65

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG +Q +LE L+IPYTHSG+LASAL+MDK R+K+VV++ GV V PS L+NRF + S
Sbjct: 66  PFGEDGAIQGVLEYLQIPYTHSGVLASALAMDKDRAKKVVAAAGVVVAPSRLMNRFDIGS 125

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           QH + PPYV+KP++ GSS G++++K+DQ  P  ++ S+ W +GD++++E Y+ G ELTC 
Sbjct: 126 QHPMKPPYVVKPVREGSSFGVVIVKEDQPHPPQVIGSADWKYGDEVMVEGYIAGRELTCA 185

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           VMGD ++DV EI      FY Y+ KY +  STHV PAKI  +IY+++Q +A  AH+AIGC
Sbjct: 186 VMGDRAMDVCEIIPVSYQFYDYDSKYVAGASTHVCPAKILPNIYQKIQTMALTAHRAIGC 245

Query: 241 RGISRSDFLFDP---LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           RG+SRSDF FD       +V WLEIN QPGMTP S+ P++A  AG SF ELL WMVEDAS
Sbjct: 246 RGVSRSDFRFDDRFSEEGEVVWLEINTQPGMTPTSLVPDIAKAAGISFAELLSWMVEDAS 305

Query: 298 CLR 300
           CLR
Sbjct: 306 CLR 308


>gi|253998175|ref|YP_003050238.1| D-alanine--D-alanine ligase [Methylovorus sp. SIP3-4]
 gi|253984854|gb|ACT49711.1| D-alanine/D-alanine ligase [Methylovorus sp. SIP3-4]
          Length = 320

 Score =  345 bits (885), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 112/298 (37%), Positives = 164/298 (55%), Gaps = 8/298 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG S EREVSL SG A  +AL   G + +  D        L  L  D  F  LHG
Sbjct: 26  VAVLMGGRSGEREVSLKSGGAVLAALLRQGVQAAAFDPAERDLHEL--LAFDRVFISLHG 83

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--M 118
            FGEDG VQ  LEL+ IPYT SG+LAS++ MDK R+K +  S G+      L++  +   
Sbjct: 84  RFGEDGTVQGALELMGIPYTGSGVLASSVGMDKWRTKLLWRSAGIATPDFELLDASSDFA 143

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
             +  +  P  +KP   GSS+GI  +K+  ++      ++       ++ E++V G E T
Sbjct: 144 AVEQRLGLPMFVKPANEGSSIGISKVKQSGALKAAYELAA--KSDPLVIAERFVGGGEYT 201

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
            G++GD +L +  I VP ++FY +E KY   ++ ++ P  +P +    ++  A  A +AI
Sbjct: 202 VGILGDEALPIIRI-VPANEFYDFEAKYLRDDTQYLCPCGLPAEQEARIRAEALQAFRAI 260

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           G RG  R DFL D   R  ++LE+N  PGMT  S+ P  A   G SF EL++ ++E A
Sbjct: 261 GGRGWGRVDFLMDESGRH-YFLEVNTSPGMTDHSLVPMAAKANGISFDELVIRILELA 317


>gi|308185661|ref|YP_003929792.1| D-alanine:D-alanine ligase B [Pantoea vagans C9-1]
 gi|308056171|gb|ADO08343.1| D-alanine:D-alanine ligase B [Pantoea vagans C9-1]
          Length = 306

 Score =  345 bits (885), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 115/305 (37%), Positives = 167/305 (54%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG S+EREVSL+SG+A  + L + G     +D      L L       AF  LHG
Sbjct: 5   VAVLMGGTSAEREVSLNSGQAVVAGLREMGINAHGVDTRDVSVLTLKEQGFTKAFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119
             GEDG +QA+LE L++PYT SG++ASA++MDK+R+K +    G+P    + + R   D 
Sbjct: 65  RGGEDGTMQAVLEFLQLPYTGSGVMASAVTMDKLRTKLLWQGRGLPSGKFVWLTRQQFDA 124

Query: 120 --------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                   +   +  P  +KP   GSS+GI  +    ++P  L    ++ H D +L+E +
Sbjct: 125 GLDAESNAAIAALGLPLFVKPACEGSSVGISRVNDLSALPAALDM--AFKHDDDVLVEAF 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++GD  L   EI    S+FY YE KY S ++ +V PA +  +   E+Q+L 
Sbjct: 183 LSGAEYTVAIVGDRILPSIEIK-SASEFYDYEAKYISDDTQYVCPADLSAEREAELQQLV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A +A+GCRG  R D + D   R    LE N  PGMT  S+ P  A  AG SF +L+  
Sbjct: 242 LAAWRALGCRGWGRVDVMTDGEGR-FQLLEANTSPGMTSHSLVPMAAKQAGMSFPQLVAH 300

Query: 292 MVEDA 296
           ++E A
Sbjct: 301 ILELA 305


>gi|224826080|ref|ZP_03699183.1| D-alanine/D-alanine ligase [Lutiella nitroferrum 2002]
 gi|224601717|gb|EEG07897.1| D-alanine/D-alanine ligase [Lutiella nitroferrum 2002]
          Length = 303

 Score =  345 bits (885), Expect = 6e-93,   Method: Composition-based stats.
 Identities = 98/298 (32%), Positives = 153/298 (51%), Gaps = 6/298 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AV+MGG S+EREVSL SG     AL+  G      D        L     +  F  LHG
Sbjct: 7   VAVMMGGTSAEREVSLMSGGGVLKALQSQGVDAHAFDPAEKPLAALKDEGFERVFIALHG 66

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTM 118
            FGEDG +Q  LE + +PYT  G++ASA+ MDK R+K +    G+P+   +L+  +    
Sbjct: 67  PFGEDGTLQGALETMGMPYTGCGVMASAIGMDKWRTKLLWQGAGLPIPAFVLLADDSNFA 126

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
             +  +  P  +KP   GSS+G+  +K    +        +  +   ++ E +V G E T
Sbjct: 127 AVEAQLGLPLFVKPATEGSSIGVTKVKHPGELRAAY--EEARRYDKLVIAEAFVGGGEYT 184

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           C ++GD +L   +I  P ++FY Y+ KY   ++ +  P+ +  ++    + LA  A + +
Sbjct: 185 CAIIGDKALPTIKIE-PATEFYDYQAKYFRDDTVYRCPSGLSAEVELRARELALTAFKVL 243

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           G RG  R DFL D     ++ LE+N  PGMT  S+ P  A   G S+ EL L +++ A
Sbjct: 244 GGRGWGRVDFLMDEAGG-IYLLEVNTSPGMTSHSLVPMAARVEGLSYEELCLAILDMA 300


>gi|241664305|ref|YP_002982665.1| D-alanine--D-alanine ligase [Ralstonia pickettii 12D]
 gi|240866332|gb|ACS63993.1| D-alanine/D-alanine ligase [Ralstonia pickettii 12D]
          Length = 331

 Score =  345 bits (885), Expect = 6e-93,   Method: Composition-based stats.
 Identities = 102/303 (33%), Positives = 161/303 (53%), Gaps = 9/303 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VLMGG S+ERE+SL SG    +AL   G      D        LA    D     LHG
Sbjct: 20  VGVLMGGRSAEREISLMSGNGVLAALRARGVDAHPFDPGLQPVADLAKQGFDRVVISLHG 79

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTM 118
            FGEDG +Q +LE   IPYT SG+LASAL+MDK  +K+   + G+P    ++++      
Sbjct: 80  RFGEDGTIQGLLEQFGIPYTGSGVLASALAMDKEATKRQWQTHGLPTPDFVMLHAGADWQ 139

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                +  P ++KP + GSS+G+  +     +P    +++  +    ++ EQ+++G ELT
Sbjct: 140 AVADRLGLPLIVKPAREGSSIGLTKVTSVAELPAAYEKAARLDRD--VMAEQFIEGDELT 197

Query: 179 CGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
           C ++G+     +L +  I  P+++ Y Y+ KY + ++ +  PA I +D+   VQ L   A
Sbjct: 198 CPIIGEGESATALPLIRIVAPQAN-YDYQNKYFTDDTRYECPAPIAVDVAARVQALVVQA 256

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           ++ +GCRG  R+D +        F LE+N  PGMT  S+ P  A  AG S+ + +L +  
Sbjct: 257 YRGLGCRGWGRADIMLRKSDNAPFLLEMNTSPGMTGHSLVPMGARAAGISYEDFVLQLAA 316

Query: 295 DAS 297
            AS
Sbjct: 317 SAS 319


>gi|225627879|ref|ZP_03785915.1| D-alanine--D-alanine ligase [Brucella ceti str. Cudo]
 gi|294852754|ref|ZP_06793427.1| D-alanine-D-alanine ligase B [Brucella sp. NVSL 07-0026]
 gi|225617042|gb|EEH14088.1| D-alanine--D-alanine ligase [Brucella ceti str. Cudo]
 gi|294821343|gb|EFG38342.1| D-alanine-D-alanine ligase B [Brucella sp. NVSL 07-0026]
          Length = 315

 Score =  345 bits (885), Expect = 6e-93,   Method: Composition-based stats.
 Identities = 175/303 (57%), Positives = 229/303 (75%), Gaps = 3/303 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSER VSLSSG ACA+ LE+ G++V++IDVDR+V  +L  LKPD+ FN LHG
Sbjct: 13  VAVLMGGFSSERSVSLSSGVACATTLEECGYRVTRIDVDRNVASILVELKPDVVFNALHG 72

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG +Q +LE L+IPYTHSG+LASAL+MDK R+K+V ++ GV V PS L+NRF + S
Sbjct: 73  PFGEDGAIQGVLEYLQIPYTHSGVLASALAMDKDRAKKVAAAAGVVVAPSRLMNRFDIGS 132

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           QH + PPYV+KP++ GSS G++++K+DQ  P  ++ S+ W +GD++++E Y+ G ELTC 
Sbjct: 133 QHPMKPPYVVKPVREGSSFGVVIVKEDQPHPPQVIGSADWKYGDEVMVEGYIAGRELTCA 192

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           VMGD ++DV EI      FY Y+ KY +  STHV PAKI  +IY+++Q +A  AH+AIGC
Sbjct: 193 VMGDRAMDVCEIIPVGYQFYDYDSKYVAGASTHVCPAKILPNIYQKIQTMALTAHRAIGC 252

Query: 241 RGISRSDFLFDP---LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           RG+SRSDF FD       +V WLEIN QPGMTP S+ P++A  AG SF ELL WMVEDAS
Sbjct: 253 RGVSRSDFRFDDRFSEEGEVVWLEINTQPGMTPTSLVPDIAKAAGISFAELLSWMVEDAS 312

Query: 298 CLR 300
           CLR
Sbjct: 313 CLR 315


>gi|304396565|ref|ZP_07378446.1| D-alanine/D-alanine ligase [Pantoea sp. aB]
 gi|304356074|gb|EFM20440.1| D-alanine/D-alanine ligase [Pantoea sp. aB]
          Length = 306

 Score =  345 bits (885), Expect = 6e-93,   Method: Composition-based stats.
 Identities = 113/305 (37%), Positives = 168/305 (55%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG S+EREVSL+SG+A  + L + G     ID      L L       AF  LHG
Sbjct: 5   VAVLMGGTSAEREVSLNSGQAVIAGLREMGINAHGIDTRHVSVLTLKEQGFTKAFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119
             GEDG +QA+LE L++PYT SG++ASA++MDK+R+K +    G+P    + + R   + 
Sbjct: 65  RGGEDGTMQAVLEFLQLPYTGSGVMASAVTMDKLRTKLLWQGRGLPSGKFVWLTRQQFEG 124

Query: 120 --------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                   +   +  P  +KP   GSS+GI  +    ++P  L    ++ + + +L+E +
Sbjct: 125 GLDEESNAAIAALGLPLFVKPACEGSSVGISRVNDLHALPAAL--EMAFKYDNDVLVEAF 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++GD  L   EI    S+FY YE KY S ++ +V PA++  +   E+Q+L 
Sbjct: 183 LSGAEYTVAIVGDRILPSIEIK-SASEFYDYEAKYISDDTQYVCPAELSAEREAELQQLV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A +A+GCRG  R D + D   R    LE N  PGMT  S+ P  A  AG SF +L+  
Sbjct: 242 LAAWRALGCRGWGRVDVMTDGEGR-FQLLEANTSPGMTSHSLVPMAAKQAGMSFPQLVAH 300

Query: 292 MVEDA 296
           ++E A
Sbjct: 301 ILELA 305


>gi|89055244|ref|YP_510695.1| D-alanine--D-alanine ligase [Jannaschia sp. CCS1]
 gi|122498273|sp|Q28NP2|DDL_JANSC RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|88864793|gb|ABD55670.1| D-alanine--D-alanine ligase [Jannaschia sp. CCS1]
          Length = 316

 Score =  345 bits (885), Expect = 6e-93,   Method: Composition-based stats.
 Identities = 128/310 (41%), Positives = 189/310 (60%), Gaps = 14/310 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-----RSVGLVLAHLKPDLAF 55
           + VLMGG S+EREVSLS+G+ CA AL   GF V ++D         +   L  ++PD+ F
Sbjct: 11  VVVLMGGPSAEREVSLSTGRGCAEALRGEGFDVIEVDPGVTHAGAELCARLQEIQPDVVF 70

Query: 56  NVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR 115
           N LHG +GEDG VQ +LE + +PYTHSG+L+SAL+MDK R+K  + + G+PV  SI+  +
Sbjct: 71  NALHGRWGEDGCVQGLLEWMRLPYTHSGVLSSALAMDKTRAKTALKAHGLPVVDSIIAPK 130

Query: 116 FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175
             + + H+++ PYV+KP   GSS+G+ ++ +  + P  L      +  D++++E Y  G 
Sbjct: 131 EAVVAAHVMATPYVVKPNNEGSSVGVYLVNEAANGPPHLSD----DMPDEVMVETYAPGR 186

Query: 176 ELTCGVMGDASLDVTEIAVPK---SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
           ELT  V+GDA  D   + V       +Y Y+ KY    S HV+PA+IP +I+     +A 
Sbjct: 187 ELTVSVLGDAPGDPGALTVTDILTDGWYDYDAKYKPGGSRHVVPAQIPQEIWDACMDMAV 246

Query: 233 LAHQAIGCRGISRSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
            AH  +GC+G+SR+D+ +D       +  LE+N QPGMTP S+ PE     G SF +L  
Sbjct: 247 RAHTILGCKGVSRTDYRWDEARGLDGLIILEVNTQPGMTPTSLTPEQGEAVGMSFGKLCR 306

Query: 291 WMVEDASCLR 300
           W+VEDA+C R
Sbjct: 307 WLVEDATCDR 316


>gi|254702149|ref|ZP_05163977.1| D-alanine--D-alanine ligase [Brucella suis bv. 5 str. 513]
 gi|254708100|ref|ZP_05169928.1| D-alanine--D-alanine ligase [Brucella pinnipedialis M163/99/10]
 gi|254710469|ref|ZP_05172280.1| D-alanine--D-alanine ligase [Brucella pinnipedialis B2/94]
 gi|254714462|ref|ZP_05176273.1| D-alanine--D-alanine ligase [Brucella ceti M644/93/1]
 gi|254717360|ref|ZP_05179171.1| D-alanine--D-alanine ligase [Brucella ceti M13/05/1]
 gi|256031963|ref|ZP_05445577.1| D-alanine--D-alanine ligase [Brucella pinnipedialis M292/94/1]
 gi|256061485|ref|ZP_05451629.1| D-alanine--D-alanine ligase [Brucella neotomae 5K33]
 gi|256160162|ref|ZP_05457856.1| D-alanine--D-alanine ligase [Brucella ceti M490/95/1]
 gi|256255368|ref|ZP_05460904.1| D-alanine--D-alanine ligase [Brucella ceti B1/94]
 gi|256369844|ref|YP_003107355.1| D-alanylalanine synthetase [Brucella microti CCM 4915]
 gi|260169100|ref|ZP_05755911.1| D-alanine--D-alanine ligase [Brucella sp. F5/99]
 gi|261219191|ref|ZP_05933472.1| D-alanine-D-alanine ligase B [Brucella ceti M13/05/1]
 gi|261222570|ref|ZP_05936851.1| D-alanine-D-alanine ligase B [Brucella ceti B1/94]
 gi|261315603|ref|ZP_05954800.1| D-alanine-D-alanine ligase B [Brucella pinnipedialis M163/99/10]
 gi|261318041|ref|ZP_05957238.1| D-alanine-D-alanine ligase B [Brucella pinnipedialis B2/94]
 gi|261322252|ref|ZP_05961449.1| D-alanine-D-alanine ligase B [Brucella ceti M644/93/1]
 gi|261325492|ref|ZP_05964689.1| D-alanine-D-alanine ligase B [Brucella neotomae 5K33]
 gi|261752719|ref|ZP_05996428.1| D-alanine-D-alanine ligase B [Brucella suis bv. 5 str. 513]
 gi|261758607|ref|ZP_06002316.1| D-alanine-D-alanine ligase B [Brucella sp. F5/99]
 gi|265989072|ref|ZP_06101629.1| D-alanine-D-alanine ligase B [Brucella pinnipedialis M292/94/1]
 gi|265998535|ref|ZP_06111092.1| D-alanine-D-alanine ligase B [Brucella ceti M490/95/1]
 gi|256000007|gb|ACU48406.1| D-alanylalanine synthetase [Brucella microti CCM 4915]
 gi|260921154|gb|EEX87807.1| D-alanine-D-alanine ligase B [Brucella ceti B1/94]
 gi|260924280|gb|EEX90848.1| D-alanine-D-alanine ligase B [Brucella ceti M13/05/1]
 gi|261294942|gb|EEX98438.1| D-alanine-D-alanine ligase B [Brucella ceti M644/93/1]
 gi|261297264|gb|EEY00761.1| D-alanine-D-alanine ligase B [Brucella pinnipedialis B2/94]
 gi|261301472|gb|EEY04969.1| D-alanine-D-alanine ligase B [Brucella neotomae 5K33]
 gi|261304629|gb|EEY08126.1| D-alanine-D-alanine ligase B [Brucella pinnipedialis M163/99/10]
 gi|261738591|gb|EEY26587.1| D-alanine-D-alanine ligase B [Brucella sp. F5/99]
 gi|261742472|gb|EEY30398.1| D-alanine-D-alanine ligase B [Brucella suis bv. 5 str. 513]
 gi|262553159|gb|EEZ08993.1| D-alanine-D-alanine ligase B [Brucella ceti M490/95/1]
 gi|264661269|gb|EEZ31530.1| D-alanine-D-alanine ligase B [Brucella pinnipedialis M292/94/1]
          Length = 308

 Score =  345 bits (885), Expect = 6e-93,   Method: Composition-based stats.
 Identities = 175/303 (57%), Positives = 229/303 (75%), Gaps = 3/303 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSER VSLSSG ACA+ LE+ G++V++IDVDR+V  +L  LKPD+ FN LHG
Sbjct: 6   VAVLMGGFSSERSVSLSSGVACATTLEECGYRVTRIDVDRNVASILVELKPDVVFNALHG 65

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG +Q +LE L+IPYTHSG+LASAL+MDK R+K+V ++ GV V PS L+NRF + S
Sbjct: 66  PFGEDGAIQGVLEYLQIPYTHSGVLASALAMDKDRAKKVAAAAGVVVAPSRLMNRFDIGS 125

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           QH + PPYV+KP++ GSS G++++K+DQ  P  ++ S+ W +GD++++E Y+ G ELTC 
Sbjct: 126 QHPMKPPYVVKPVREGSSFGVVIVKEDQPHPPQVIGSADWKYGDEVMVEGYIAGRELTCA 185

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           VMGD ++DV EI      FY Y+ KY +  STHV PAKI  +IY+++Q +A  AH+AIGC
Sbjct: 186 VMGDRAMDVCEIIPVGYQFYDYDSKYVAGASTHVCPAKILPNIYQKIQTMALTAHRAIGC 245

Query: 241 RGISRSDFLFDP---LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           RG+SRSDF FD       +V WLEIN QPGMTP S+ P++A  AG SF ELL WMVEDAS
Sbjct: 246 RGVSRSDFRFDDRFSEEGEVVWLEINTQPGMTPTSLVPDIAKAAGISFAELLSWMVEDAS 305

Query: 298 CLR 300
           CLR
Sbjct: 306 CLR 308


>gi|145641272|ref|ZP_01796852.1| D-alanylalanine synthetase [Haemophilus influenzae R3021]
 gi|145274109|gb|EDK13975.1| D-alanylalanine synthetase [Haemophilus influenzae 22.4-21]
          Length = 297

 Score =  345 bits (885), Expect = 6e-93,   Method: Composition-based stats.
 Identities = 113/297 (38%), Positives = 171/297 (57%), Gaps = 10/297 (3%)

Query: 4   LMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFG 63
           L+GG S+EREVSL+SGKA   AL   G+    ID        L     + AFN+LHG  G
Sbjct: 2   LLGGTSAEREVSLNSGKAVLEALLKQGYNAYPIDPKEYNVANLKKDGFNRAFNILHGRGG 61

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT---MDS 120
           EDG +Q +LE + +PYT  G++ASAL+MDKMR+K +  + G+PV    +V R T   +D 
Sbjct: 62  EDGTIQGLLEQIGLPYTGCGVMASALTMDKMRTKMLWKAFGLPVADMKVVTRETFSELDP 121

Query: 121 QHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
           Q +   +  P ++KP   GSS+G+  +K  + +   +  +  +   + +LIE+++ G EL
Sbjct: 122 QAVVAKLGLPLMVKPSLEGSSVGLTKVKAVEELKSAVEYALKF--DNTILIEEWLAGDEL 179

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           T  V+ +  L    I VP+ +FY YE KY S N+ +  PA +  +  +E+  L   A+ A
Sbjct: 180 TVPVLDNQVLPAIRI-VPEGEFYDYEAKYISDNTQYFCPAGLTPEREQELAILVKRAYDA 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           +GCRG SR D + D        +E+N  PGMT  S+FP+ AA  G SF +L++ ++E
Sbjct: 239 VGCRGWSRIDVMCDAKGN-FRLVEVNTNPGMTSHSLFPKSAATVGISFEQLVVKILE 294


>gi|319404507|emb|CBI78112.1| D-alanine--D-alanine ligase [Bartonella rochalimae ATCC BAA-1498]
          Length = 306

 Score =  345 bits (885), Expect = 7e-93,   Method: Composition-based stats.
 Identities = 157/301 (52%), Positives = 220/301 (73%), Gaps = 1/301 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG+SSER VSLSSG ACA  LE  G+ V+++DVD  +  VL  L+P + FN LHG
Sbjct: 6   IAVLMGGLSSERSVSLSSGSACADILEAHGYSVTRVDVDSRIASVLEKLQPHIVFNALHG 65

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
           +FGEDG +Q ILE L+IPYTHSG++ASAL+MDK R+K + +S GVPV PS +++R  + S
Sbjct: 66  SFGEDGRIQGILEYLKIPYTHSGVMASALAMDKGRAKIIAASAGVPVAPSYVMDRCAIGS 125

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           QH + PPYVIKP+  GSS+G+I++  D++ P   + SS     D++++E+Y+ G ELTC 
Sbjct: 126 QHPLEPPYVIKPVHEGSSIGVIIVNGDEAFPPHNIVSSERMDKDEVIVEKYIPGRELTCA 185

Query: 181 VMGDASLDVTEIAVP-KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
           V+GD  LDV EI       FY Y+ KY S  S H+ PA++ L+IY++VQR++  AHQAIG
Sbjct: 186 VLGDEVLDVCEIIPDQHFQFYDYDSKYKSGGSIHICPAQLSLNIYQKVQRMSLAAHQAIG 245

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
           CRG+SRSDF F+  + ++ WLEIN QPGMT  S+ P++A  +G ++ +++ W+VEDASC+
Sbjct: 246 CRGVSRSDFRFNEETEELIWLEINTQPGMTSTSLVPDIAKASGRTYSDIVKWIVEDASCM 305

Query: 300 R 300
           R
Sbjct: 306 R 306


>gi|288939897|ref|YP_003442137.1| D-alanine/D-alanine ligase [Allochromatium vinosum DSM 180]
 gi|288895269|gb|ADC61105.1| D-alanine/D-alanine ligase [Allochromatium vinosum DSM 180]
          Length = 308

 Score =  345 bits (885), Expect = 7e-93,   Method: Composition-based stats.
 Identities = 103/297 (34%), Positives = 166/297 (55%), Gaps = 5/297 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +A+LMGG ++ERE+SL SG+A   AL+  G  V  ID D ++   L     D AF +LHG
Sbjct: 15  VALLMGGQAAEREISLKSGRAVHEALQRLGVDVEPIDPDATLLERLRTGGYDRAFIILHG 74

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV-NRFTMD 119
             GEDG +Q  LE + +PYT SG+L SAL MDK R K   + CG+P    +L+ +   + 
Sbjct: 75  RGGEDGQIQGALETIGLPYTGSGVLGSALGMDKYRCKLAWAGCGLPTADFVLLRDESDLT 134

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
           +   +  P +IKP+  GSS+G+  ++  + +      ++ +     +L E+++ G+ELTC
Sbjct: 135 AAAELGFPLMIKPVHEGSSIGMARVESVEGLERAWRAAAEF--DSLVLAERWIQGMELTC 192

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
            ++G  +L    +  P + FY YE KYS+ ++ +  P+ +  ++   ++ LA  A   +G
Sbjct: 193 AILGHEALPTIRLETPHA-FYDYEAKYSADSTRYHCPSGLDAEVEARLRALALEAFDVVG 251

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             G  R D + D  + + F LEIN  PGMT  S+ P  A  AG  F +L+  ++E +
Sbjct: 252 ASGWGRVDMMLDG-TGQPFLLEINTVPGMTDHSLVPMAARVAGIDFDDLVWRILETS 307


>gi|22127498|ref|NP_670921.1| D-alanine--D-alanine ligase [Yersinia pestis KIM 10]
 gi|45443359|ref|NP_994898.1| D-alanine--D-alanine ligase [Yersinia pestis biovar Microtus str.
           91001]
 gi|51595040|ref|YP_069231.1| D-alanine--D-alanine ligase [Yersinia pseudotuberculosis IP 32953]
 gi|108809535|ref|YP_653451.1| D-alanine--D-alanine ligase [Yersinia pestis Antiqua]
 gi|108810588|ref|YP_646355.1| D-alanine--D-alanine ligase [Yersinia pestis Nepal516]
 gi|145600340|ref|YP_001164416.1| D-alanine--D-alanine ligase [Yersinia pestis Pestoides F]
 gi|150260408|ref|ZP_01917136.1| D-alanine--D-alanine ligase B [Yersinia pestis CA88-4125]
 gi|153949608|ref|YP_001402342.1| D-alanine--D-alanine ligase [Yersinia pseudotuberculosis IP 31758]
 gi|162421556|ref|YP_001607293.1| D-alanine--D-alanine ligase [Yersinia pestis Angola]
 gi|165928190|ref|ZP_02224022.1| D-alanine--D-alanine ligase [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165937767|ref|ZP_02226328.1| D-alanine--D-alanine ligase [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|166008968|ref|ZP_02229866.1| D-alanine--D-alanine ligase [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166212032|ref|ZP_02238067.1| D-alanine--D-alanine ligase [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|167401219|ref|ZP_02306719.1| D-alanine--D-alanine ligase [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167421968|ref|ZP_02313721.1| D-alanine--D-alanine ligase [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167426436|ref|ZP_02318189.1| D-alanine--D-alanine ligase [Yersinia pestis biovar Mediaevalis
           str. K1973002]
 gi|167469526|ref|ZP_02334230.1| D-alanine--D-alanine ligase [Yersinia pestis FV-1]
 gi|170025731|ref|YP_001722236.1| D-alanine--D-alanine ligase [Yersinia pseudotuberculosis YPIII]
 gi|186894046|ref|YP_001871158.1| D-alanine--D-alanine ligase [Yersinia pseudotuberculosis PB1/+]
 gi|218927753|ref|YP_002345628.1| D-alanine--D-alanine ligase [Yersinia pestis CO92]
 gi|229837052|ref|ZP_04457217.1| D-alanine--D-alanine ligase B [Yersinia pestis Pestoides A]
 gi|229840445|ref|ZP_04460604.1| D-alanine--D-alanine ligase B [Yersinia pestis biovar Orientalis
           str. PEXU2]
 gi|229843013|ref|ZP_04463163.1| D-alanine--D-alanine ligase B [Yersinia pestis biovar Orientalis
           str. India 195]
 gi|229900780|ref|ZP_04515904.1| D-alanine--D-alanine ligase B [Yersinia pestis Nepal516]
 gi|270487850|ref|ZP_06204924.1| D-ala D-ala ligase N-terminal domain protein [Yersinia pestis KIM
           D27]
 gi|294502645|ref|YP_003566707.1| D-alanylalanine synthetase [Yersinia pestis Z176003]
 gi|22095560|sp|Q8ZIE7|DDL_YERPE RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|81640386|sp|Q66EK3|DDL_YERPS RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|123073601|sp|Q1CMM5|DDL_YERPN RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|123372037|sp|Q1C216|DDL_YERPA RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|166198514|sp|A4TQ81|DDL_YERPP RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|167012333|sp|A7FM64|DDL_YERP3 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|226696394|sp|A9R122|DDL_YERPG RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|229486025|sp|B2K4E8|DDL_YERPB RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|229486026|sp|B1JK79|DDL_YERPY RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|21960595|gb|AAM87172.1|AE013964_8 D-alanine-D-alanine ligase B [Yersinia pestis KIM 10]
 gi|45438228|gb|AAS63775.1| D-alanine--D-alanine ligase B [Yersinia pestis biovar Microtus str.
           91001]
 gi|51588322|emb|CAH19930.1| D-alanine-D-alanine ligase B, affects cell division [Yersinia
           pseudotuberculosis IP 32953]
 gi|108774236|gb|ABG16755.1| D-alanine--D-alanine ligase [Yersinia pestis Nepal516]
 gi|108781448|gb|ABG15506.1| D-alanine--D-alanine ligase [Yersinia pestis Antiqua]
 gi|115346364|emb|CAL19236.1| D-alanine--D-alanine ligase B [Yersinia pestis CO92]
 gi|145212036|gb|ABP41443.1| D-alanine--D-alanine ligase [Yersinia pestis Pestoides F]
 gi|149289816|gb|EDM39893.1| D-alanine--D-alanine ligase B [Yersinia pestis CA88-4125]
 gi|152961103|gb|ABS48564.1| D-alanine--D-alanine ligase [Yersinia pseudotuberculosis IP 31758]
 gi|162354371|gb|ABX88319.1| D-alanine--D-alanine ligase [Yersinia pestis Angola]
 gi|165914179|gb|EDR32795.1| D-alanine--D-alanine ligase [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|165919801|gb|EDR37102.1| D-alanine--D-alanine ligase [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165992307|gb|EDR44608.1| D-alanine--D-alanine ligase [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166206778|gb|EDR51258.1| D-alanine--D-alanine ligase [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|166960105|gb|EDR56126.1| D-alanine--D-alanine ligase [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167049244|gb|EDR60652.1| D-alanine--D-alanine ligase [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167054534|gb|EDR64342.1| D-alanine--D-alanine ligase [Yersinia pestis biovar Mediaevalis
           str. K1973002]
 gi|169752265|gb|ACA69783.1| D-alanine--D-alanine ligase [Yersinia pseudotuberculosis YPIII]
 gi|186697072|gb|ACC87701.1| D-alanine--D-alanine ligase [Yersinia pseudotuberculosis PB1/+]
 gi|229682119|gb|EEO78211.1| D-alanine--D-alanine ligase B [Yersinia pestis Nepal516]
 gi|229689889|gb|EEO81948.1| D-alanine--D-alanine ligase B [Yersinia pestis biovar Orientalis
           str. India 195]
 gi|229696811|gb|EEO86858.1| D-alanine--D-alanine ligase B [Yersinia pestis biovar Orientalis
           str. PEXU2]
 gi|229705995|gb|EEO92004.1| D-alanine--D-alanine ligase B [Yersinia pestis Pestoides A]
 gi|262360675|gb|ACY57396.1| D-alanylalanine synthetase [Yersinia pestis D106004]
 gi|262364622|gb|ACY61179.1| D-alanylalanine synthetase [Yersinia pestis D182038]
 gi|270336354|gb|EFA47131.1| D-ala D-ala ligase N-terminal domain protein [Yersinia pestis KIM
           D27]
 gi|294353104|gb|ADE63445.1| D-alanylalanine synthetase [Yersinia pestis Z176003]
 gi|320016923|gb|ADW00495.1| D-alanine--D-alanine ligase B [Yersinia pestis biovar Medievalis
           str. Harbin 35]
          Length = 306

 Score =  345 bits (885), Expect = 7e-93,   Method: Composition-based stats.
 Identities = 104/305 (34%), Positives = 164/305 (53%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL SG+A  + L++AG     +D        L     D  F  LHG
Sbjct: 5   VAVLLGGTSAEREVSLLSGQAVLAGLKEAGIDAYGVDTKDFPVTQLKEQGFDKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LE L++PYT SG++ASAL+MDK+R+K V  + G+P+ P + +NR   ++
Sbjct: 65  RGGEDGTLQGVLEFLQLPYTGSGVMASALTMDKLRTKLVWQALGLPISPYVALNRQQFET 124

Query: 121 Q---------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P ++KP   GSS+G+  +     +   L++  ++ H   +LIE++
Sbjct: 125 LSPEELVACVAKLGLPLIVKPSHEGSSVGMSKVDHASELQKALVE--AFQHDSDVLIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++GD  L    I  P   FY Y+ KY S  + +  P+ +  +  +++  LA
Sbjct: 183 LSGPEFTVAILGDEVLPSIRIQPP-GVFYDYDAKYLSDKTQYFCPSGLSDESEQQLAALA 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A+ A+ C G  R D + D      + LE+N  PGMT  S+ P  A   G SF +L+  
Sbjct: 242 LQAYHALDCSGWGRVDVMQD-RDGHFYLLEVNTSPGMTSHSLVPMAARQYGLSFSQLVAR 300

Query: 292 MVEDA 296
           ++  A
Sbjct: 301 ILMLA 305


>gi|313200244|ref|YP_004038902.1| d-alanine/d-alanine ligase [Methylovorus sp. MP688]
 gi|312439560|gb|ADQ83666.1| D-alanine/D-alanine ligase [Methylovorus sp. MP688]
          Length = 320

 Score =  344 bits (884), Expect = 7e-93,   Method: Composition-based stats.
 Identities = 112/298 (37%), Positives = 164/298 (55%), Gaps = 8/298 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG S EREVSL SG A  +AL   G + +  D        L  L  D  F  LHG
Sbjct: 26  VAVLMGGRSGEREVSLKSGGAVLAALLRQGVEAAAFDPAERDLHEL--LAFDRVFISLHG 83

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--M 118
            FGEDG VQ  LEL+ IPYT SG+LAS++ MDK R+K +  S G+      L++  +   
Sbjct: 84  RFGEDGTVQGALELMGIPYTGSGVLASSVGMDKWRTKLLWRSAGIATPDFELLDASSDFA 143

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
             +  +  P  +KP   GSS+GI  +K+  ++      ++       ++ E++V G E T
Sbjct: 144 AVEQRLGLPMFVKPANEGSSIGISKVKQSGALKAAYELAA--KSDPLVIAERFVGGGEYT 201

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
            G++GD +L +  I VP ++FY +E KY   ++ ++ P  +P +    ++  A  A +AI
Sbjct: 202 VGILGDEALPIIRI-VPANEFYDFEAKYLRDDTQYLCPCGLPAEQEARIRAEALQAFRAI 260

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           G RG  R DFL D   R  ++LE+N  PGMT  S+ P  A   G SF EL++ ++E A
Sbjct: 261 GGRGWGRVDFLMDEAGRH-YFLEVNTSPGMTDHSLVPMAAKANGISFDELVIRILELA 317


>gi|126729256|ref|ZP_01745070.1| D-alanine--D-alanine ligase [Sagittula stellata E-37]
 gi|126710246|gb|EBA09298.1| D-alanine--D-alanine ligase [Sagittula stellata E-37]
          Length = 296

 Score =  344 bits (884), Expect = 8e-93,   Method: Composition-based stats.
 Identities = 132/301 (43%), Positives = 189/301 (62%), Gaps = 8/301 (2%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGN 61
           AVL GG S+EREVSL SG+ CA+AL   G++V ++D    V   L  + PD+ FN LHG 
Sbjct: 2   AVLKGGPSAEREVSLVSGRECAAALRGEGYEVIELDAGPDVAERLKEIAPDVVFNALHGR 61

Query: 62  FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ 121
           +GEDG +Q +LE L +PYTHSG+LAS+L++DK ++K    + G+PV  S L  +  + + 
Sbjct: 62  WGEDGCIQGMLEWLRLPYTHSGVLASSLAIDKEKTKAAYRTAGLPVAESSLARKSDVMAA 121

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
           H+++PPYV+KP   GSS+G+ ++ ++ + P  L ++      + +++EQ+V G ELT  V
Sbjct: 122 HVMAPPYVVKPYNEGSSVGVYLVHEEANGPPVLDET----MPEVVMVEQFVPGRELTATV 177

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241
           MG  +L VTEI      +Y Y+ KY +  S H+ PA++P DI +     A  AH A+GCR
Sbjct: 178 MGGRALGVTEILT--DGWYDYDAKYKAGGSRHICPAELPQDITEACLDYALRAHAALGCR 235

Query: 242 GISRSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
           G+SR+DF +D       +  LE N QPGMTP S+ PE     G SF +   WMVEDASC 
Sbjct: 236 GVSRTDFRWDDTQELAGLRLLETNTQPGMTPTSLSPEHGQLVGMSFGQFCAWMVEDASCD 295

Query: 300 R 300
           R
Sbjct: 296 R 296


>gi|17986865|ref|NP_539499.1| D-alanine--D-alanine ligase [Brucella melitensis bv. 1 str. 16M]
 gi|39931178|sp|Q8YI63|DDLB_BRUME RecName: Full=D-alanine--D-alanine ligase B; AltName:
           Full=D-Ala-D-Ala ligase B; AltName: Full=D-alanylalanine
           synthetase B
 gi|17982503|gb|AAL51763.1| d-alanine--d-alanine ligase [Brucella melitensis bv. 1 str. 16M]
          Length = 315

 Score =  344 bits (883), Expect = 9e-93,   Method: Composition-based stats.
 Identities = 175/303 (57%), Positives = 229/303 (75%), Gaps = 3/303 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSER VSLSSG ACA+ LE+ G++V++IDVDR+V  +L  LKPD+ FN LHG
Sbjct: 13  VAVLMGGFSSERSVSLSSGVACATTLEECGYRVTRIDVDRNVASILVELKPDVVFNALHG 72

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG +Q +LE L+IPYTHSG+LASAL+MDK R+K+V ++ GV V PS L+NRF + S
Sbjct: 73  PFGEDGAIQGVLEYLQIPYTHSGVLASALAMDKDRAKKVAAAAGVVVAPSRLMNRFDIGS 132

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           QH + PPYV+KP++ GSS G++++K+DQ  P  ++ S+ W +GD++++E Y+ G ELTC 
Sbjct: 133 QHPMKPPYVVKPVREGSSFGVVIVKEDQPHPPQVIGSADWKYGDEVMVEGYIAGRELTCA 192

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           VMGD ++DV EI      FY Y+ KY +  STHV PAKI  +IY+++Q +A  AH+AIGC
Sbjct: 193 VMGDRAMDVCEIMPVGYQFYDYDSKYVAGASTHVCPAKILPNIYQKIQTMALTAHRAIGC 252

Query: 241 RGISRSDFLFDP---LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           RG+SRSDF FD       +V WLEIN QPGMTP S+ P++A  AG SF ELL WMVEDAS
Sbjct: 253 RGVSRSDFRFDDRFSEEGEVVWLEINTQPGMTPTSLVPDIAKAAGISFAELLSWMVEDAS 312

Query: 298 CLR 300
           CLR
Sbjct: 313 CLR 315


>gi|300690343|ref|YP_003751338.1| D-alanine-D-alanine ligase B, affects cell division [Ralstonia
           solanacearum PSI07]
 gi|299077403|emb|CBJ50028.1| D-alanine-D-alanine ligase B, affects cell division [Ralstonia
           solanacearum PSI07]
          Length = 331

 Score =  344 bits (883), Expect = 9e-93,   Method: Composition-based stats.
 Identities = 100/303 (33%), Positives = 160/303 (52%), Gaps = 9/303 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V++GG S+ERE+SL SG    +AL   G      D        LA          LHG
Sbjct: 20  VGVILGGRSAEREISLLSGNGVLAALRSRGVDAHPFDPGTQPVAGLATQGFHRVVISLHG 79

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTM 118
            FGEDG +Q +LE   IPYT SG+LASAL+MDK  +K++  + G+P    ++++      
Sbjct: 80  RFGEDGTIQGLLEQFGIPYTGSGVLASALAMDKEATKRLWQTHGLPTPDFVMLHAGADWQ 139

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                +  P ++KP + GSS+G+  +     +P    +++  +    ++ EQ+++G ELT
Sbjct: 140 AVADRLGLPLIVKPAREGSSIGLTKVTSVAELPAAYEKAARLDRD--VMAEQFIEGDELT 197

Query: 179 CGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
           C V+G+     +L +  I  P+++ Y Y+ KY + ++ +  PA IP D+   VQ L   A
Sbjct: 198 CAVIGEGESATALPLIRIVAPQAN-YDYQHKYFTDDTRYECPAPIPADVAARVQALVVQA 256

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           ++ +GCRG  R+D +        F LE+N  PGMT  S+ P  A   G S+ + +L +  
Sbjct: 257 YRGLGCRGWGRADIMLREHDNAPFLLEMNTSPGMTGHSLVPMAARAVGISYEDFVLQLAA 316

Query: 295 DAS 297
            AS
Sbjct: 317 TAS 319


>gi|58038646|ref|YP_190610.1| D-alanine--D-alanine ligase [Gluconobacter oxydans 621H]
 gi|81352633|sp|Q5FUJ2|DDL_GLUOX RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|58001060|gb|AAW59954.1| D-alanine--D-alanine ligase [Gluconobacter oxydans 621H]
          Length = 303

 Score =  344 bits (883), Expect = 9e-93,   Method: Composition-based stats.
 Identities = 130/303 (42%), Positives = 188/303 (62%), Gaps = 6/303 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---PDLAFNV 57
           +AVL+GG SSER VSL SG+A   AL + G  V+ IDV   +   +A LK   PD+ FN 
Sbjct: 3   VAVLLGGTSSERPVSLVSGEAAIEALREKGHDVTPIDVGPDIATTIASLKAAAPDVVFNA 62

Query: 58  LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117
           LHG  GEDG +Q +LE L +PYTHSGI ASA++MDK  ++ ++++ G+PV    +V    
Sbjct: 63  LHGPRGEDGAIQGVLEWLGLPYTHSGIRASAVAMDKGATRILLAAAGLPVAQGRVVTVEE 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
           +     +  PYVIKP+  GSS+G+ +++   +   ++ ++  W  G + L+E ++ G EL
Sbjct: 123 LAEADPLPAPYVIKPVAEGSSVGVEIVRTGDNRRAEIART--WRFGKEALVESFIPGREL 180

Query: 178 TCGVMGDASLDVTEIAVPKSD-FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           T GVMGD +L VT+I   ++  FY +E KY +  S HV+PA++P  +       A  AHQ
Sbjct: 181 TAGVMGDRALAVTDILPSETAAFYDFEAKYKAGGSRHVVPAELPQAVTDRALDYALRAHQ 240

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            +GC+G SR+DF +D  +  +  LE+N QPGMTP S+ PE AAY G S+ EL  WMV +A
Sbjct: 241 TLGCQGASRTDFRYDEGTDTLVILEVNTQPGMTPTSLLPEQAAYCGISYPELCDWMVREA 300

Query: 297 SCL 299
              
Sbjct: 301 LAR 303


>gi|225852910|ref|YP_002733143.1| D-alanine--D-alanine ligase [Brucella melitensis ATCC 23457]
 gi|256045058|ref|ZP_05447959.1| D-alanine--D-alanine ligase [Brucella melitensis bv. 1 str. Rev.1]
 gi|256113981|ref|ZP_05454764.1| D-alanine--D-alanine ligase [Brucella melitensis bv. 3 str. Ether]
 gi|256263609|ref|ZP_05466141.1| D-alanine-D-alanine ligase B [Brucella melitensis bv. 2 str. 63/9]
 gi|260565343|ref|ZP_05835827.1| D-alanine-D-alanine ligase B [Brucella melitensis bv. 1 str. 16M]
 gi|265991485|ref|ZP_06104042.1| D-alanine-D-alanine ligase B [Brucella melitensis bv. 1 str. Rev.1]
 gi|265995323|ref|ZP_06107880.1| D-alanine-D-alanine ligase B [Brucella melitensis bv. 3 str. Ether]
 gi|225641275|gb|ACO01189.1| D-alanine--D-alanine ligase [Brucella melitensis ATCC 23457]
 gi|260151411|gb|EEW86505.1| D-alanine-D-alanine ligase B [Brucella melitensis bv. 1 str. 16M]
 gi|262766436|gb|EEZ12225.1| D-alanine-D-alanine ligase B [Brucella melitensis bv. 3 str. Ether]
 gi|263002269|gb|EEZ14844.1| D-alanine-D-alanine ligase B [Brucella melitensis bv. 1 str. Rev.1]
 gi|263093660|gb|EEZ17665.1| D-alanine-D-alanine ligase B [Brucella melitensis bv. 2 str. 63/9]
 gi|326409452|gb|ADZ66517.1| D-alanine--D-alanine ligase [Brucella melitensis M28]
 gi|326539158|gb|ADZ87373.1| D-alanine--D-alanine ligase [Brucella melitensis M5-90]
          Length = 308

 Score =  344 bits (883), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 175/303 (57%), Positives = 229/303 (75%), Gaps = 3/303 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSER VSLSSG ACA+ LE+ G++V++IDVDR+V  +L  LKPD+ FN LHG
Sbjct: 6   VAVLMGGFSSERSVSLSSGVACATTLEECGYRVTRIDVDRNVASILVELKPDVVFNALHG 65

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG +Q +LE L+IPYTHSG+LASAL+MDK R+K+V ++ GV V PS L+NRF + S
Sbjct: 66  PFGEDGAIQGVLEYLQIPYTHSGVLASALAMDKDRAKKVAAAAGVVVAPSRLMNRFDIGS 125

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           QH + PPYV+KP++ GSS G++++K+DQ  P  ++ S+ W +GD++++E Y+ G ELTC 
Sbjct: 126 QHPMKPPYVVKPVREGSSFGVVIVKEDQPHPPQVIGSADWKYGDEVMVEGYIAGRELTCA 185

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           VMGD ++DV EI      FY Y+ KY +  STHV PAKI  +IY+++Q +A  AH+AIGC
Sbjct: 186 VMGDRAMDVCEIMPVGYQFYDYDSKYVAGASTHVCPAKILPNIYQKIQTMALTAHRAIGC 245

Query: 241 RGISRSDFLFDP---LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           RG+SRSDF FD       +V WLEIN QPGMTP S+ P++A  AG SF ELL WMVEDAS
Sbjct: 246 RGVSRSDFRFDDRFSEEGEVVWLEINTQPGMTPTSLVPDIAKAAGISFAELLSWMVEDAS 305

Query: 298 CLR 300
           CLR
Sbjct: 306 CLR 308


>gi|121602474|ref|YP_989225.1| D-alanine--D-alanine ligase [Bartonella bacilliformis KC583]
 gi|166198473|sp|A1UTC2|DDL_BARBK RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|47779265|gb|AAT38533.1| DdlB [Bartonella bacilliformis]
 gi|120614651|gb|ABM45252.1| D-alanine--D-alanine ligase [Bartonella bacilliformis KC583]
          Length = 306

 Score =  344 bits (883), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 154/301 (51%), Positives = 219/301 (72%), Gaps = 1/301 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VLMGG SSER VSLSSG ACA  LE  G+ V ++DVD  +  VL  L+P   FN LHG
Sbjct: 6   VTVLMGGWSSERSVSLSSGTACADILEAQGYNVVRVDVDDRIVSVLEELRPTTVFNALHG 65

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG +Q ILE L+IPYTHSG++ASAL+MDK R+K + +S GV V PS +++RF++ +
Sbjct: 66  PFGEDGCIQGILEYLKIPYTHSGVMASALAMDKGRAKIIAASAGVSVAPSCVMSRFSLGA 125

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +H + PPYVIKP++ GSS G++++  D+++PL  + ++ W + D++++E+YV G ELTC 
Sbjct: 126 EHPMKPPYVIKPIREGSSFGVVIVGSDETMPLHDIMNNEWVYDDEIMVEKYVPGRELTCA 185

Query: 181 VMGDASLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
           V+GD  LDV EI   +   FY Y+ KY S  S H+ PAK+  +IY+ VQR++  AHQAIG
Sbjct: 186 VLGDEVLDVCEIVPKECFQFYDYDSKYKSGGSLHICPAKLSSNIYQNVQRMSLAAHQAIG 245

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
           CRG+SRSDF F+  + ++ WLEIN QPGMT  S+ P++A  +G ++ +++ W+VEDASC+
Sbjct: 246 CRGVSRSDFRFNEETGELIWLEINTQPGMTSTSLVPDIAKASGRTYGDIVKWIVEDASCM 305

Query: 300 R 300
           R
Sbjct: 306 R 306


>gi|187479348|ref|YP_787373.1| D-alanine--D-alanine ligase [Bordetella avium 197N]
 gi|123513903|sp|Q2KVG4|DDL_BORA1 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|115423935|emb|CAJ50487.1| D-alanine--D-alanine ligase [Bordetella avium 197N]
          Length = 317

 Score =  344 bits (882), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 108/305 (35%), Positives = 162/305 (53%), Gaps = 10/305 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VL GG S+EREVSL SG     AL  AG      D        L     +  F  LHG
Sbjct: 8   VGVLYGGRSAEREVSLMSGAGVHEALRSAGVDAHLFDTGLQDLTALEAAGFERVFIALHG 67

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118
            FGEDG +Q  LELL IPYT SG+ ASAL+MDK+ +K+V    G+P      ++  T   
Sbjct: 68  RFGEDGAIQGALELLNIPYTGSGVTASALAMDKIMTKRVWLQHGLPTPAFEEIDSDTELR 127

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                +  P ++KP   GS++GI  +     +      +S +   + +L EQ+V G ELT
Sbjct: 128 RVPDRLGLPLILKPPHEGSTVGITKVAACADMEQAYAAASHF--DEVVLAEQFVRGRELT 185

Query: 179 CGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
             ++G      +L V EI  P  + Y Y+ KY +  + +  PA +P+ + ++++++A  A
Sbjct: 186 VALLGSGRNARALPVIEIVAPDGN-YDYQNKYFTDVTQYFCPADLPVGVAEQIEKIAVQA 244

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           ++A+GC G  R+DF+ D    + + LE+N  PGMT  S+ P  A   G S+ EL + ++ 
Sbjct: 245 YRALGCEGWGRADFILDGQ-NQPWLLEMNTSPGMTSHSLVPMAARAVGMSYAELCVAILA 303

Query: 295 DASCL 299
           DASC 
Sbjct: 304 DASCK 308


>gi|49475852|ref|YP_033893.1| D-alanine--D-alanine ligase [Bartonella henselae str. Houston-1]
 gi|123720824|sp|Q6G2Q8|DDL_BARHE RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|30526097|gb|AAP32279.1| D-alanine D-alanine ligase B [Bartonella henselae str. Houston-1]
 gi|49238660|emb|CAF27906.1| D-alanine--D-alanine ligase [Bartonella henselae str. Houston-1]
          Length = 306

 Score =  344 bits (882), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 164/301 (54%), Positives = 225/301 (74%), Gaps = 1/301 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSER VSLSSG ACA  LE  G++VS++DVD  +  VL  L+PD+AFN LHG
Sbjct: 6   IAVLMGGFSSERSVSLSSGTACADVLEAQGYRVSRVDVDGHIASVLEQLQPDIAFNALHG 65

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG +Q +LE L+IPYTHSG++ASAL+MDK R+K VV+S GV + PS +++RF +  
Sbjct: 66  PFGEDGRIQGVLEYLKIPYTHSGVMASALAMDKGRAKIVVASVGVSIAPSCVMSRFAVGK 125

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +H + PPYVIKP+  GSSLG+I++K+++S+P   +  S W + D +++E+Y+ G ELTC 
Sbjct: 126 EHPMEPPYVIKPVCEGSSLGVIIVKENESVPSLNVVGSEWVYADTVIVEKYIPGRELTCA 185

Query: 181 VMGDASLDVTEI-AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
           VMG+ +LDV EI       FY Y+ KY S  S HV PA++  +IY+ VQR++  AHQAIG
Sbjct: 186 VMGNKALDVCEILPEKHFQFYDYDSKYKSGGSLHVCPAQLSSNIYQNVQRMSLAAHQAIG 245

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
           CRG+SRSDF FD  + ++ WLEIN QPGMTP S+FP++A  +G ++ +++ WMVEDASC+
Sbjct: 246 CRGVSRSDFRFDEETGELVWLEINTQPGMTPTSLFPDIAKASGRTYGDIVQWMVEDASCM 305

Query: 300 R 300
           R
Sbjct: 306 R 306


>gi|264680244|ref|YP_003280154.1| D-alanine--D-alanine ligase [Comamonas testosteroni CNB-2]
 gi|262210760|gb|ACY34858.1| D-alanine--D-alanine ligase [Comamonas testosteroni CNB-2]
          Length = 323

 Score =  344 bits (882), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 106/299 (35%), Positives = 160/299 (53%), Gaps = 9/299 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSEREVSL SG    +AL+  G    + D        L     D  F  LHG
Sbjct: 16  VAVLMGGRSSEREVSLMSGAGVLAALQSKGVDAHKFDPAEQGLEQLKVQGFDRCFIALHG 75

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTM 118
            +GEDG VQ  LELL+IPYT SG++AS+++MDK+ +K++    G+P     +V     T 
Sbjct: 76  RYGEDGTVQGALELLDIPYTGSGVMASSIAMDKIMTKRIWRFEGLPTPDWRMVASAAETR 135

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   +  P ++KP + GSS+G+  +            ++   +  ++L EQ++ G E T
Sbjct: 136 AALEALGAPMIVKPARDGSSIGLTKVMNADECAKAYELAA--QYDAEVLCEQFIAGDETT 193

Query: 179 CGVMGD----ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
           C V+G      +L V  I  P+ + Y Y+ KY +  + +  P+ +P     E+QR+   A
Sbjct: 194 CPVLGTGAQAGALPVIRIVAPEGN-YDYQNKYFTDTTQYHCPSGLPAAEEAEIQRIVEKA 252

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            + +GCRG +R+D +     RK F LEIN  PGMT  S+ P  A  +G S+  L L ++
Sbjct: 253 FRTLGCRGWARADIMIRASDRKPFLLEINTSPGMTGHSLVPMAARASGVSYENLCLGIL 311


>gi|269137997|ref|YP_003294697.1| D-alanine--D-alanine ligase [Edwardsiella tarda EIB202]
 gi|267983657|gb|ACY83486.1| D-alanine--D-alanine ligase [Edwardsiella tarda EIB202]
 gi|304558044|gb|ADM40708.1| D-alanine--D-alanine ligase B [Edwardsiella tarda FL6-60]
          Length = 306

 Score =  344 bits (882), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 108/305 (35%), Positives = 168/305 (55%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+ER+VSL SG+A  + L++AG     +D  R     L     +  F  LHG
Sbjct: 5   VAVLLGGTSAERDVSLLSGQAVLNGLKEAGIDAYPVDTMRFPATQLREAGFERVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119
             GEDG +Q +LE L++PYT SG++ASAL+MDK+RSKQV  + G+PV P + ++R   D 
Sbjct: 65  RGGEDGTLQGVLEFLQLPYTGSGVMASALTMDKLRSKQVWQAAGLPVAPYVAISREQFDE 124

Query: 120 --------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                     + +  P ++KP + GSS+G+  + +       L+++    H D++LIE++
Sbjct: 125 GLTMDTLREINDLGLPLIVKPSREGSSVGMSKVSEPCEFDPALVEAL--RHDDEILIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T   +GD  L    I      FY YE KY S  + +  P+ +  +  + +  L 
Sbjct: 183 LAGPEYTVAFIGDEILPSIRIQAA-GAFYDYEAKYLSDKTEYFCPSGLSDEQEQALAALV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A++A+GC G  R D + D    +   LE+N  PGMT  S+ P  A  AG  F +L++ 
Sbjct: 242 RRAYKALGCSGWGRVDVMQDAA-GEFCLLEVNTAPGMTSHSLVPMAARQAGMRFSQLVVR 300

Query: 292 MVEDA 296
           ++E A
Sbjct: 301 ILELA 305


>gi|23502299|ref|NP_698426.1| D-alanine--D-alanine ligase [Brucella suis 1330]
 gi|163843684|ref|YP_001628088.1| D-alanine--D-alanine ligase [Brucella suis ATCC 23445]
 gi|254704685|ref|ZP_05166513.1| D-alanine--D-alanine ligase [Brucella suis bv. 3 str. 686]
 gi|261755379|ref|ZP_05999088.1| D-alanine-D-alanine ligase B [Brucella suis bv. 3 str. 686]
 gi|39931155|sp|Q8FZP5|DDLB_BRUSU RecName: Full=D-alanine--D-alanine ligase B; AltName:
           Full=D-Ala-D-Ala ligase B; AltName: Full=D-alanylalanine
           synthetase B
 gi|23348275|gb|AAN30341.1| D-alanine--D-alanine ligase B [Brucella suis 1330]
 gi|163674407|gb|ABY38518.1| D-alanine--D-alanine ligase [Brucella suis ATCC 23445]
 gi|261745132|gb|EEY33058.1| D-alanine-D-alanine ligase B [Brucella suis bv. 3 str. 686]
          Length = 308

 Score =  344 bits (882), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 175/303 (57%), Positives = 229/303 (75%), Gaps = 3/303 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSER VSLSSG ACA+ LE+ G++V++IDVDR+V  +L  LKPD+ FN LHG
Sbjct: 6   VAVLMGGFSSERSVSLSSGVACATTLEECGYRVTRIDVDRNVASILVELKPDVVFNALHG 65

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG +Q +LE L+IPYTHSG+LASAL+MDK R+K+V ++ GV V PS L+NRF + S
Sbjct: 66  PFGEDGAIQGVLEYLQIPYTHSGVLASALAMDKDRAKKVAAAAGVVVAPSRLMNRFDIGS 125

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           QH + PPYV+KP++ GSS G++++K+DQ  P  ++ S+ W +GD++++E Y+ G ELTC 
Sbjct: 126 QHPMKPPYVVKPVREGSSFGVVIVKEDQPHPPQVIGSADWKYGDEVMVEGYIAGRELTCA 185

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           VMGD ++DV EI      FY Y+ KY +  STHV PAKI  +IY+++Q +A  AH+AIGC
Sbjct: 186 VMGDRAMDVCEIIPVGYQFYDYDSKYVAGASTHVSPAKILPNIYQKIQTMALTAHRAIGC 245

Query: 241 RGISRSDFLFDP---LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           RG+SRSDF FD       +V WLEIN QPGMTP S+ P++A  AG SF ELL WMVEDAS
Sbjct: 246 RGVSRSDFRFDDRFSEEGEVVWLEINTQPGMTPTSLVPDIAKAAGISFAELLSWMVEDAS 305

Query: 298 CLR 300
           CLR
Sbjct: 306 CLR 308


>gi|299533116|ref|ZP_07046501.1| D-alanine--D-alanine ligase [Comamonas testosteroni S44]
 gi|298718893|gb|EFI59865.1| D-alanine--D-alanine ligase [Comamonas testosteroni S44]
          Length = 323

 Score =  343 bits (881), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 106/299 (35%), Positives = 160/299 (53%), Gaps = 9/299 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSEREVSL SG    +AL+  G    + D        L     D  F  LHG
Sbjct: 16  VAVLMGGRSSEREVSLMSGAGVLAALQSKGVDAHKFDPAEQGLEQLKVQGFDRCFIALHG 75

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTM 118
            +GEDG VQ  LELL+IPYT SG++AS+++MDK+ +K++    G+P     +V     T 
Sbjct: 76  RYGEDGTVQGALELLDIPYTGSGVMASSIAMDKIMTKRIWRFEGLPTPDWRMVASAAETR 135

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   +  P ++KP + GSS+G+  +            ++   +  ++L EQ++ G E T
Sbjct: 136 AALEALGAPMIVKPARDGSSIGLTKVMNADECAKAYELAA--QYDAEVLCEQFIAGDETT 193

Query: 179 CGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
           C V+G      +L V  I  P+ + Y Y+ KY +  + +  P+ +P     E+QR+   A
Sbjct: 194 CPVLGTGAKAAALPVIRIVAPEGN-YDYQNKYFTDTTQYHCPSGLPAAEEAEIQRIVEKA 252

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            + +GCRG +R+D +     RK F LEIN  PGMT  S+ P  A  +G S+  L L ++
Sbjct: 253 FRTLGCRGWARADIMIRASDRKPFLLEINTSPGMTGHSLVPMAARASGVSYENLCLGIL 311


>gi|260220018|emb|CBA27135.1| D-alanine--D-alanine ligase [Curvibacter putative symbiont of Hydra
           magnipapillata]
          Length = 312

 Score =  343 bits (881), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 109/305 (35%), Positives = 159/305 (52%), Gaps = 9/305 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG S+EREVSL SG     AL   G      D        L     D  F  LHG
Sbjct: 6   VAVLMGGASAEREVSLMSGSGVLKALRSQGVDAHAFDPSERALDELKREGFDRCFIALHG 65

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--FTM 118
            FGEDG VQ  LELL IPYT SG++AS++SMDK+ +K++    G+       V     T 
Sbjct: 66  RFGEDGTVQGALELLGIPYTGSGVMASSISMDKVMTKRIWRFEGLSTPAWQQVKSAAETQ 125

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   +  P ++KP + GSS+G   +            +S   H   +L EQ++ G E+T
Sbjct: 126 AAFAALGAPMIVKPAREGSSIGFTKVMSADQCDAAYALAS--QHDSHVLCEQFIAGDEVT 183

Query: 179 CGVMG----DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
           C V G      +L V  I  P+ + Y Y+ KY +  + +++PA +P    + +Q L   A
Sbjct: 184 CPVWGPSSAPEALPVIRIVAPEGN-YDYQNKYFTDTTQYLVPAGLPAGEEEAIQALVCKA 242

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           +Q +GCRG +R+D + D  +R  + LEIN  PGMT  S+ P  A+ AG S+ EL + +++
Sbjct: 243 YQVLGCRGWARADVMIDAKTRTPYLLEINTSPGMTGHSLVPMSASAAGISYEELCVRLLQ 302

Query: 295 DASCL 299
             +  
Sbjct: 303 STATD 307


>gi|120609517|ref|YP_969195.1| D-alanine--D-alanine ligase [Acidovorax citrulli AAC00-1]
 gi|190359104|sp|A1TKD3|DDL_ACIAC RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|120587981|gb|ABM31421.1| D-alanine--D-alanine ligase [Acidovorax citrulli AAC00-1]
          Length = 334

 Score =  343 bits (880), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 110/303 (36%), Positives = 159/303 (52%), Gaps = 9/303 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG S+EREVSL SG     AL   G      D  +S    L        F  LHG
Sbjct: 18  VAVLMGGDSAEREVSLMSGGGVLQALRARGVDAHAFDPSQSDLSELKSHGYARCFIALHG 77

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG VQ  LELL IPYT  G++ASA++MDK+ +K++    G+P     LV+     +
Sbjct: 78  RHGEDGTVQGALELLGIPYTGPGVMASAIAMDKIMTKRIWRFEGLPTPDWRLVSSAAETA 137

Query: 121 QHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           Q L  +  P ++KP + GS++G+  +            +S   +  ++L EQ+++G E T
Sbjct: 138 QALEDLGSPMIVKPSREGSTIGLTKVTSPGQCEQAYRLAS--RYDPEVLCEQFIEGEETT 195

Query: 179 CGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
           C V+G      +L V  I  P+ + Y Y+ KY +  + +  P  +P    +E+QRL   A
Sbjct: 196 CPVLGQGAGAHALPVIRIVAPEGN-YDYQNKYFTDVTQYHCPCGLPEQEEREIQRLVVEA 254

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            + + CRG +R+D +     RK F LEIN  PGMT  S+ P  A   G S+ EL L ++ 
Sbjct: 255 FRTLQCRGWARADIMIRASDRKPFLLEINTSPGMTGHSLVPMSARAMGVSYEELCLRILA 314

Query: 295 DAS 297
            AS
Sbjct: 315 GAS 317


>gi|319407500|emb|CBI81148.1| D-alanine--D-alanine ligase [Bartonella sp. 1-1C]
          Length = 306

 Score =  343 bits (880), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 157/301 (52%), Positives = 222/301 (73%), Gaps = 1/301 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG+SSER VSLSSG ACA  LE  G+ V+++DVD  +  +L  L+P +AFN LHG
Sbjct: 6   IAVLMGGLSSERSVSLSSGSACADVLEAHGYSVTRVDVDSRIASILEKLQPHIAFNALHG 65

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
           +FGEDG +Q ILE L+IPYTHSG++ASAL+MDK R+K + +S GVPV PS +++R  + S
Sbjct: 66  SFGEDGRIQGILEYLKIPYTHSGVMASALAMDKGRAKIIAASAGVPVAPSYVMDRCAIGS 125

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           QH + PPYVIKP+  GSS+G+I++  D++ P   + SS     D++++E+Y+ G ELTC 
Sbjct: 126 QHPLEPPYVIKPVHEGSSVGVIIVNGDEAFPPHNIASSERMDKDEVIVEKYIPGRELTCA 185

Query: 181 VMGDASLDVTEIAVP-KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
           V+GD  LDV EI       FY Y+ KY S  S H+ PA++ L+IY++VQR++ +AHQAIG
Sbjct: 186 VLGDEVLDVCEIIPDQHFQFYDYDSKYKSGGSIHICPAQLSLNIYQKVQRMSLVAHQAIG 245

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
           CRG+SRSDF F+  + ++ WLEIN QPGMT  S+ P++A  +G ++ +++ W+VEDASC+
Sbjct: 246 CRGVSRSDFRFNEETEELIWLEINTQPGMTSTSLVPDIAKASGRTYSDIVKWIVEDASCM 305

Query: 300 R 300
           R
Sbjct: 306 R 306


>gi|147677725|ref|YP_001211940.1| D-alanine--D-alanine ligase [Pelotomaculum thermopropionicum SI]
 gi|190359201|sp|A5D2F9|DDL_PELTS RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|146273822|dbj|BAF59571.1| D-alanine-D-alanine ligase and related ATP-grasp enzymes
           [Pelotomaculum thermopropionicum SI]
          Length = 318

 Score =  343 bits (880), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 114/309 (36%), Positives = 182/309 (58%), Gaps = 17/309 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VLMGG SSEREVSL +G+A  +AL+   +   +IDV   V   +   + DLAF  LHG
Sbjct: 5   VGVLMGGRSSEREVSLKTGEAVYNALKVKNYLAVKIDVGLDVVERIKEERIDLAFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG +Q +LE+L+IPYT SG+LASAL+MDK  +K+++   G+P  P +LV +     
Sbjct: 65  RYGEDGTIQGLLEMLDIPYTGSGVLASALAMDKAATKKIIQYEGLPTPPFMLVEKKEALK 124

Query: 121 QHL----------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           + L          +  P V+K    GS++G+  + K++ +   L    ++++    L+EQ
Sbjct: 125 ESLQACSERICREMGLPLVVKAPTQGSTIGMSFVHKEEDMAGAL--ELAYDYDPVALVEQ 182

Query: 171 YVDGIELTCGVMGDA---SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227
           ++ G E+T  ++G+    +L + EI V  +  Y Y+ KY++  S H++P +IP      +
Sbjct: 183 FIRGTEVTASILGNEEPVALPLIEI-VSATGVYDYKAKYTAGMSDHIIPPRIPEKQQNAI 241

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287
           ++LA    +++GCRG++R DF+ D      F LE+N  PGMT  S+FP+ A  AG  F +
Sbjct: 242 KKLAVSTFKSLGCRGLARVDFIVDKQGN-PFILEVNTIPGMTATSLFPDAARAAGIEFPD 300

Query: 288 LLLWMVEDA 296
           L+  +VE A
Sbjct: 301 LIEKLVELA 309


>gi|83748768|ref|ZP_00945783.1| D-alanine--D-alanine ligase [Ralstonia solanacearum UW551]
 gi|207721501|ref|YP_002251941.1| d-alanine--d-alanine ligase (d-alanylalanine
           synthetase)(d-ala-d-ala ligase) protein [Ralstonia
           solanacearum MolK2]
 gi|207744399|ref|YP_002260791.1| d-alanine--d-alanine ligase (d-alanylalanine
           synthetase)(d-ala-d-ala ligase) protein [Ralstonia
           solanacearum IPO1609]
 gi|83724589|gb|EAP71752.1| D-alanine--D-alanine ligase [Ralstonia solanacearum UW551]
 gi|206586661|emb|CAQ17247.1| d-alanine--d-alanine ligase (d-alanylalanine
           synthetase)(d-ala-d-ala ligase) protein [Ralstonia
           solanacearum MolK2]
 gi|206595804|emb|CAQ62731.1| d-alanine--d-alanine ligase (d-alanylalanine
           synthetase)(d-ala-d-ala ligase) protein [Ralstonia
           solanacearum IPO1609]
          Length = 331

 Score =  343 bits (880), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 99/303 (32%), Positives = 161/303 (53%), Gaps = 9/303 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V++GG S+ERE+SL SG    +AL   G      D        LA          LHG
Sbjct: 20  VGVILGGRSAEREISLLSGNGVLAALRSRGVDAHPFDPGTQPVAELATQGFHRVVISLHG 79

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTM 118
            FGEDG +Q +LE   IPYT SG+LASAL+MDK  +K++  + G+P    ++++      
Sbjct: 80  RFGEDGTIQGLLEQFGIPYTGSGVLASALAMDKEATKRLWQTHGLPTPDFVMLHAGADWQ 139

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                +  P ++KP + GSS+G+  +     +P    +++  +    ++ EQ+++G ELT
Sbjct: 140 AVADRLGLPLIVKPAREGSSIGLTKVTSVAGLPAAYERAARLDRD--VMAEQFIEGDELT 197

Query: 179 CGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
           C V+G+     +L +  I  P+++ Y Y+ KY + ++ +  PA IP ++   VQ L   A
Sbjct: 198 CAVIGEGDSTTALPLIRIVAPQAN-YDYQHKYFTDDTRYECPAPIPAEVAARVQALVVQA 256

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           ++++GCRG  R+D +        F LE+N  PGMT  S+ P  A   G S+ + +L +  
Sbjct: 257 YRSLGCRGWGRADIMLRKHDNAPFLLEMNTSPGMTGHSLVPMAARAVGISYEDFVLQLAA 316

Query: 295 DAS 297
            AS
Sbjct: 317 TAS 319


>gi|294635011|ref|ZP_06713528.1| D-alanine--D-alanine ligase B [Edwardsiella tarda ATCC 23685]
 gi|291091610|gb|EFE24171.1| D-alanine--D-alanine ligase B [Edwardsiella tarda ATCC 23685]
          Length = 307

 Score =  343 bits (880), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 111/305 (36%), Positives = 166/305 (54%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL SG+A  + L+ AG     +D        L        F  LHG
Sbjct: 6   VAVLLGGTSAEREVSLESGQAVVNGLKQAGIDAYPVDTRAFPATQLRDAGFTRVFIALHG 65

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119
             GEDG +Q +LE L++PYT SG++ASAL+MDK+RSKQV  + G+PV P + ++R   D 
Sbjct: 66  RGGEDGTLQGVLEFLQLPYTGSGVMASALTMDKLRSKQVWQAAGLPVAPYVAISREQFDE 125

Query: 120 --------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                     + +  P ++KP + GSS+G+  + +       L+++    H D++LIE+ 
Sbjct: 126 GLTMDTLREINDLGLPLIVKPSREGSSVGMSKVNEPCEFDPALVEAL--RHDDEILIEKC 183

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T   +GD  L    I     +FY YE KY S  + +  P+ +  +  + +  L 
Sbjct: 184 LVGPEYTVAFIGDEILPSIRIKAA-GEFYDYEAKYLSDKTEYFCPSGLSAEQEQSLATLV 242

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A+QA+GC G  R D + D   R    LE+N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 243 KRAYQALGCSGWGRVDVMQDESGR-FCLLEVNTAPGMTSHSLVPMAARQAGMSFSQLVVR 301

Query: 292 MVEDA 296
           ++E A
Sbjct: 302 ILELA 306


>gi|83592283|ref|YP_426035.1| D-alanine--D-alanine ligase [Rhodospirillum rubrum ATCC 11170]
 gi|123767104|sp|Q2RVU7|DDL_RHORT RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|83575197|gb|ABC21748.1| D-alanine--D-alanine ligase [Rhodospirillum rubrum ATCC 11170]
          Length = 302

 Score =  343 bits (880), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 134/302 (44%), Positives = 197/302 (65%), Gaps = 8/302 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL---KPDLAFNV 57
           + VLMGG S+ER VSL+SG A   AL  AG+ V+ +DV R V   +A L   +PD+ FN 
Sbjct: 5   VTVLMGGFSTERAVSLNSGAAAGEALRQAGYAVTLLDVGRDVAAFIAALTQTRPDVVFNA 64

Query: 58  LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117
           LHG FGEDG +Q IL+++ +PYTHSG LASA++MDK  +K V     +PV P ++ +R +
Sbjct: 65  LHGRFGEDGAIQGILDIMALPYTHSGRLASAIAMDKPSAKLVFERFAIPVAPHVVADRAS 124

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
           + ++  ++ PYV+KPL  GSS+G+ ++  + +          W +G Q+++E+++ G EL
Sbjct: 125 VLAETAMARPYVVKPLDQGSSVGVTIVTSETNDLP--FSRDDWPYGRQVMVERFIPGREL 182

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           T GVMGD +L VTEI      FY Y+ KY+   S H++PA +  +++ + Q L+ LAHQA
Sbjct: 183 TVGVMGDKALGVTEIVTDH-RFYDYDAKYAQGGSRHIVPAPVAPEVFAQAQELSVLAHQA 241

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           +GCRG+SR+D  FD     ++ LE+N QPGMT  S+ PE A +AG SF +L+ W+VE A 
Sbjct: 242 LGCRGVSRADLRFD--GETLYMLEVNTQPGMTDTSLVPEQALHAGISFPDLVTWLVETAQ 299

Query: 298 CL 299
           C 
Sbjct: 300 CD 301


>gi|163868710|ref|YP_001609922.1| D-alanine--D-alanine ligase [Bartonella tribocorum CIP 105476]
 gi|189083032|sp|A9IWA2|DDL_BART1 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|161018369|emb|CAK01927.1| D-alanine--D-alanine ligase [Bartonella tribocorum CIP 105476]
          Length = 306

 Score =  343 bits (880), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 155/301 (51%), Positives = 222/301 (73%), Gaps = 1/301 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSER +SLSSG ACA  LE+ G++VS++DV   +  VL  L+PD+AFN LHG
Sbjct: 6   IAVLMGGFSSERSISLSSGAACADVLEEQGYRVSRVDVGAHIASVLEQLQPDIAFNALHG 65

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG +Q ILE L+IPYTHSG++ASAL+MDK R+K + ++ GV V PS ++NRF++  
Sbjct: 66  PFGEDGRIQGILEYLKIPYTHSGVMASALAMDKGRAKIIAANAGVCVAPSRIMNRFSIGK 125

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            H + PPYVIKP+  GSS G++++++++++P   +  S W + D++++E+Y+ G ELTC 
Sbjct: 126 THPMEPPYVIKPVCEGSSFGVVIVQENEAVPPHNIGGSEWGYADEVMVEKYIPGRELTCA 185

Query: 181 VMGDASLDVTEIAVP-KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
           V+G+  LDV EI       FY Y+ KY +  S H+ PAK+ L+IY+ VQR++  AHQAIG
Sbjct: 186 VLGNEVLDVCEILPDQHFAFYDYDSKYKTGGSLHICPAKLSLNIYQSVQRMSLAAHQAIG 245

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
           CRG+SRSDF FD  + ++ WLEIN QPGMT  S+ P++A  +G ++ +++ WMVEDASC+
Sbjct: 246 CRGVSRSDFRFDEKTGELVWLEINTQPGMTSTSLLPDIAKASGRTYGDIVQWMVEDASCM 305

Query: 300 R 300
           R
Sbjct: 306 R 306


>gi|319899154|ref|YP_004159247.1| D-alanine--D-alanine ligase [Bartonella clarridgeiae 73]
 gi|319403118|emb|CBI76676.1| D-alanine--D-alanine ligase [Bartonella clarridgeiae 73]
          Length = 306

 Score =  342 bits (879), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 155/301 (51%), Positives = 221/301 (73%), Gaps = 1/301 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG+SSER VSLSSG ACA  LE  G+ V+++DVD  +  +L  L+P +AFN LHG
Sbjct: 6   IAVLMGGVSSERSVSLSSGSACADVLEAHGYYVTRVDVDSRIASILEKLQPHIAFNALHG 65

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
           +FGEDG +Q ILE L+IPYTHSG++AS+L+MDK R+K + +S GVPV PS ++NRF +  
Sbjct: 66  SFGEDGCIQGILEYLKIPYTHSGVMASSLAMDKGRAKIIAASVGVPVAPSYVMNRFAIGV 125

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +H + PPYVIKP+  GSS G++++  D+  P   + SS W + D++++E+Y+ G ELTC 
Sbjct: 126 KHPLEPPYVIKPVHEGSSFGVVIVLGDEECPPHNIASSEWKYEDEVIVEKYIPGRELTCA 185

Query: 181 VMGDASLDVTEIAVP-KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
           V+GD  LDV EI       FY Y+ KY +  S H+ PA++ L+IY++VQR++  AHQAIG
Sbjct: 186 VLGDEVLDVCEIIPDQHFQFYDYDSKYKAGGSIHICPAQLSLNIYQKVQRMSLAAHQAIG 245

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
           CRG+SRSDF F+  + ++ WLEIN QPGMT  S+ P++A  +G ++ +++ W+VEDASC+
Sbjct: 246 CRGVSRSDFRFNEETEELIWLEINTQPGMTVTSLVPDIAKASGRTYSDIVKWIVEDASCM 305

Query: 300 R 300
           R
Sbjct: 306 R 306


>gi|326315572|ref|YP_004233244.1| D-alanine--D-alanine ligase [Acidovorax avenae subsp. avenae ATCC
           19860]
 gi|323372408|gb|ADX44677.1| D-alanine--D-alanine ligase [Acidovorax avenae subsp. avenae ATCC
           19860]
          Length = 335

 Score =  342 bits (879), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 109/303 (35%), Positives = 160/303 (52%), Gaps = 9/303 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG S+EREVSL SG     AL   G      D  +S    L        F  LHG
Sbjct: 19  VAVLMGGDSAEREVSLMSGGGVLQALRARGVDAHAFDPSQSDLSELKSHGYARCFIALHG 78

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG VQ  LELL IPYT  G++AS+++MDK+ +K++    G+P     LV+     +
Sbjct: 79  RHGEDGTVQGALELLGIPYTGPGVMASSIAMDKIMTKRIWRFEGLPTPDWRLVSSAAETA 138

Query: 121 QHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           Q L  +  P ++KP + GS++G+  +            +S   +  ++L EQ++DG E T
Sbjct: 139 QALKDLGSPMIVKPSREGSTIGLTKVTSPGQCEQAYRLAS--RYDPEVLCEQFIDGEETT 196

Query: 179 CGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
           C V+G      +L V  I  P+ + Y Y+ KY +  + +  P+ +P    +E++RL   A
Sbjct: 197 CPVLGQGAGAHALPVIRIVAPEGN-YDYQNKYFTDVTQYHCPSGLPEQEEREIRRLVVEA 255

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            + + CRG +R+D +     RK F LEIN  PGMT  S+ P  A   G S+ EL L ++ 
Sbjct: 256 FRTLQCRGWARADIMIRASDRKPFLLEINTSPGMTGHSLVPMSARAMGVSYEELCLRILA 315

Query: 295 DAS 297
            AS
Sbjct: 316 GAS 318


>gi|296284494|ref|ZP_06862492.1| D-alanine--D-alanine ligase [Citromicrobium bathyomarinum JL354]
          Length = 321

 Score =  342 bits (879), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 127/304 (41%), Positives = 185/304 (60%), Gaps = 5/304 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG ++ER VSL SG+  A ALE  G  V++ID+DR V   +A  KPD+ FN LHG
Sbjct: 9   VAVLMGGWANERPVSLMSGEGVAKALEARGHTVTRIDMDRQVAARIAEAKPDIVFNALHG 68

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG VQ +L+L+ +PYTHSG+  S +++DK  +KQ +   G+P+    +V    +  
Sbjct: 69  VPGEDGTVQGMLDLMGVPYTHSGLATSVIAIDKQLTKQALVPRGIPMPGGRIVKTDDLYE 128

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSI--PLDLLQSSSWNHGDQLLIEQYVDGIELT 178
              +  PYV+KP+  GSS+G+ ++  + +   P+       W    +LL E Y+ G ELT
Sbjct: 129 GDPLPRPYVLKPVNEGSSVGVAIVTDESNYGNPIARDAKGPWQEFPELLAEPYIRGRELT 188

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             V+G  +L VTE+ V +S FY +E KY+   + HV PA+IP D+ +   R A  AH+ +
Sbjct: 189 TAVVGGKALGVTELIV-ESGFYDFENKYTDGRTRHVCPAEIPEDVAEACLRYALEAHRIL 247

Query: 239 GCRGISRSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           GC+G SR+DF +D       +F LE N QPGMTP+S+ PE A Y G S+ +L+  ++ DA
Sbjct: 248 GCKGTSRTDFRWDDQQGLDGLFVLETNTQPGMTPLSLVPEQAKYCGMSYEDLVETIIADA 307

Query: 297 SCLR 300
              R
Sbjct: 308 LADR 311


>gi|237815828|ref|ZP_04594825.1| D-alanine--D-alanine ligase [Brucella abortus str. 2308 A]
 gi|297248708|ref|ZP_06932426.1| D-alanine-D-alanine ligase B [Brucella abortus bv. 5 str. B3196]
 gi|237789126|gb|EEP63337.1| D-alanine--D-alanine ligase [Brucella abortus str. 2308 A]
 gi|297175877|gb|EFH35224.1| D-alanine-D-alanine ligase B [Brucella abortus bv. 5 str. B3196]
          Length = 315

 Score =  342 bits (879), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 174/303 (57%), Positives = 229/303 (75%), Gaps = 3/303 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSER VSLSSG ACA+ LE+ G++V++IDVDR+V  +L  LKPD+ FN LHG
Sbjct: 13  VAVLMGGFSSERSVSLSSGVACATTLEECGYRVTRIDVDRNVASILVELKPDVVFNALHG 72

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG +Q +LE L+IPYTHSG+LASAL+MDK R+K+V ++ GV V PS L+NRF + S
Sbjct: 73  PFGEDGAIQGVLEYLQIPYTHSGVLASALAMDKDRAKKVAAAAGVVVAPSRLMNRFDIGS 132

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           QH + PPYV+KP++ GSS G++++K+DQ  P  ++ S+ W +GD++++E Y+ G ELTC 
Sbjct: 133 QHPMKPPYVVKPVREGSSFGVVIVKEDQPHPPQVIGSADWKYGDEVMVEGYIAGRELTCA 192

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           VMGD ++DV EI      FY Y+ KY +  STHV PAKI  +IY+++Q +A  AH+AIGC
Sbjct: 193 VMGDRAMDVCEIMPVGYQFYDYDSKYVAGASTHVCPAKILPNIYQKIQTMALTAHRAIGC 252

Query: 241 RGISRSDFLFDP---LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           RG+SRSDF FD       +V WLEIN QPGMTP S+ P++A  AG SF ELL WM+EDAS
Sbjct: 253 RGVSRSDFRFDDRFSEEGEVVWLEINTQPGMTPTSLVPDIAKAAGISFAELLSWMMEDAS 312

Query: 298 CLR 300
           CLR
Sbjct: 313 CLR 315


>gi|294012774|ref|YP_003546234.1| D-alanine-D-alanine ligase [Sphingobium japonicum UT26S]
 gi|292676104|dbj|BAI97622.1| D-alanine-D-alanine ligase [Sphingobium japonicum UT26S]
          Length = 321

 Score =  342 bits (879), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 131/300 (43%), Positives = 190/300 (63%), Gaps = 5/300 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG S+ER VSLSSG+  A ALE  G +V++ID+DR V L L+  +PD+ FN LHG
Sbjct: 8   VAVLMGGWSAERPVSLSSGEGVAKALESRGHRVTRIDMDRDVALRLSETRPDVVFNALHG 67

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG VQ +++L+   YTHSG+  S +++DK  +KQ +   G+P+    +V   ++  
Sbjct: 68  VPGEDGTVQGMMDLMGFTYTHSGLATSVIAIDKQLTKQALVPHGIPMPGGHIVPSESLFE 127

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSI--PLDLLQSSSWNHGDQLLIEQYVDGIELT 178
              +  PYV+KP+  GSS+G+ ++ +  +   P+       W H ++LL E Y+ G ELT
Sbjct: 128 GDPLPRPYVVKPVNEGSSVGVAIVTEGGNYGSPIGRDVEGPWLHFEELLAEPYIRGRELT 187

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             V+GD +L VTE+  PKS FY ++ KY+   + HV PA IP +I +  + +A  AHQ +
Sbjct: 188 TAVLGDEALLVTELR-PKSGFYDFDAKYTDGMTEHVCPADIPPEIGEACKAIALRAHQLL 246

Query: 239 GCRGISRSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           GC+G SRSDF +D       +F LE+N QPGMTP+S+ PE AA  G  + EL+  +VEDA
Sbjct: 247 GCKGASRSDFRWDDEQGIEGLFLLEVNTQPGMTPLSLVPEQAARLGIDYAELVERIVEDA 306


>gi|327392726|dbj|BAK10148.1| D-alanine--D-alanine ligase B DdlB [Pantoea ananatis AJ13355]
          Length = 305

 Score =  342 bits (879), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 111/305 (36%), Positives = 166/305 (54%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG S+ER+VSL SG A  + L +AG     ID      L L     +  F  LHG
Sbjct: 4   VAVLMGGTSAERDVSLMSGGAVLAGLREAGIDAQGIDTRDVSVLELTAQGFEKVFIALHG 63

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF---- 116
             GEDG +QA+LE L++PYT SG++ASA++MDK+R+K +    G+P    + + R     
Sbjct: 64  RGGEDGTLQAVLEFLQLPYTGSGVMASAVTMDKLRTKLLWQGRGLPAGKFVWITREQMQS 123

Query: 117 -----TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                T  +   +  P  +KP   GSS+GI  + +   +P  L    ++ H D +L+E +
Sbjct: 124 GLDATTEAAISALGLPLFVKPSSEGSSVGISRVNQLSDLPAAL--EEAFRHDDNVLVEAF 181

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T G++GD  L   +I    S+FY YE KY S ++ +  PA +  +   E+Q+L 
Sbjct: 182 LSGEEYTVGILGDQILPAIKIKTA-SEFYDYEAKYISDDTQYFCPAGLSAEREAELQQLV 240

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           + A +A+GC G  R D + D        LE N  PGMT  S+ P  A  AG +F +L++ 
Sbjct: 241 WSAWRALGCSGWGRVDVMTDDQ-GHFQLLEANTSPGMTSHSLVPMAAKQAGLTFSQLVVR 299

Query: 292 MVEDA 296
           ++E A
Sbjct: 300 ILELA 304


>gi|62290321|ref|YP_222114.1| D-alanine--D-alanine ligase [Brucella abortus bv. 1 str. 9-941]
 gi|82700245|ref|YP_414819.1| D-alanine--D-alanine ligase [Brucella melitensis biovar Abortus
           2308]
 gi|189024554|ref|YP_001935322.1| D-alanine--D-alanine ligase [Brucella abortus S19]
 gi|254689622|ref|ZP_05152876.1| D-alanine--D-alanine ligase [Brucella abortus bv. 6 str. 870]
 gi|254694112|ref|ZP_05155940.1| D-alanine--D-alanine ligase [Brucella abortus bv. 3 str. Tulya]
 gi|254697764|ref|ZP_05159592.1| D-alanine--D-alanine ligase [Brucella abortus bv. 2 str. 86/8/59]
 gi|254730653|ref|ZP_05189231.1| D-alanine--D-alanine ligase [Brucella abortus bv. 4 str. 292]
 gi|256257872|ref|ZP_05463408.1| D-alanine--D-alanine ligase [Brucella abortus bv. 9 str. C68]
 gi|260546863|ref|ZP_05822602.1| D-alanine-D-alanine ligase/VANA/B/C [Brucella abortus NCTC 8038]
 gi|260755150|ref|ZP_05867498.1| D-Ala-D-Ala ligase B [Brucella abortus bv. 6 str. 870]
 gi|260758369|ref|ZP_05870717.1| D-Ala-D-Ala ligase B [Brucella abortus bv. 4 str. 292]
 gi|260762195|ref|ZP_05874538.1| D-Ala-D-Ala ligase B [Brucella abortus bv. 2 str. 86/8/59]
 gi|260884163|ref|ZP_05895777.1| D-alanine-D-alanine ligase B [Brucella abortus bv. 9 str. C68]
 gi|261214412|ref|ZP_05928693.1| D-Ala-D-Ala ligase B [Brucella abortus bv. 3 str. Tulya]
 gi|62196453|gb|AAX74753.1| DdlB, D-alanine--D-alanine ligase B [Brucella abortus bv. 1 str.
           9-941]
 gi|82616346|emb|CAJ11403.1| D-alanine--D-alanine ligase/VANA/B/C:D-alanine--D-alanine ligase
           [Brucella melitensis biovar Abortus 2308]
 gi|189020126|gb|ACD72848.1| D-alanine--D-alanine ligase/VANA/B/C [Brucella abortus S19]
 gi|260095913|gb|EEW79790.1| D-alanine-D-alanine ligase/VANA/B/C [Brucella abortus NCTC 8038]
 gi|260668687|gb|EEX55627.1| D-Ala-D-Ala ligase B [Brucella abortus bv. 4 str. 292]
 gi|260672627|gb|EEX59448.1| D-Ala-D-Ala ligase B [Brucella abortus bv. 2 str. 86/8/59]
 gi|260675258|gb|EEX62079.1| D-Ala-D-Ala ligase B [Brucella abortus bv. 6 str. 870]
 gi|260873691|gb|EEX80760.1| D-alanine-D-alanine ligase B [Brucella abortus bv. 9 str. C68]
 gi|260916019|gb|EEX82880.1| D-Ala-D-Ala ligase B [Brucella abortus bv. 3 str. Tulya]
          Length = 308

 Score =  342 bits (879), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 174/303 (57%), Positives = 229/303 (75%), Gaps = 3/303 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSER VSLSSG ACA+ LE+ G++V++IDVDR+V  +L  LKPD+ FN LHG
Sbjct: 6   VAVLMGGFSSERSVSLSSGVACATTLEECGYRVTRIDVDRNVASILVELKPDVVFNALHG 65

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG +Q +LE L+IPYTHSG+LASAL+MDK R+K+V ++ GV V PS L+NRF + S
Sbjct: 66  PFGEDGAIQGVLEYLQIPYTHSGVLASALAMDKDRAKKVAAAAGVVVAPSRLMNRFDIGS 125

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           QH + PPYV+KP++ GSS G++++K+DQ  P  ++ S+ W +GD++++E Y+ G ELTC 
Sbjct: 126 QHPMKPPYVVKPVREGSSFGVVIVKEDQPHPPQVIGSADWKYGDEVMVEGYIAGRELTCA 185

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           VMGD ++DV EI      FY Y+ KY +  STHV PAKI  +IY+++Q +A  AH+AIGC
Sbjct: 186 VMGDRAMDVCEIMPVGYQFYDYDSKYVAGASTHVCPAKILPNIYQKIQTMALTAHRAIGC 245

Query: 241 RGISRSDFLFDP---LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           RG+SRSDF FD       +V WLEIN QPGMTP S+ P++A  AG SF ELL WM+EDAS
Sbjct: 246 RGVSRSDFRFDDRFSEEGEVVWLEINTQPGMTPTSLVPDIAKAAGISFAELLSWMMEDAS 305

Query: 298 CLR 300
           CLR
Sbjct: 306 CLR 308


>gi|222872735|gb|EEF09866.1| predicted protein [Populus trichocarpa]
          Length = 326

 Score =  342 bits (878), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 104/303 (34%), Positives = 161/303 (53%), Gaps = 9/303 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL SG     AL   G      D        L     D  F  LHG
Sbjct: 16  VAVLLGGRSAEREVSLMSGTGVLKALLSHGVDAHAFDPAERDLGELKKEGFDRCFIALHG 75

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--FTM 118
            +GEDG VQ  LELL IPYT  G++AS+++MDK+ +K++    G+P     LV     T 
Sbjct: 76  RYGEDGTVQGALELLGIPYTGPGVMASSIAMDKIMTKRIWRFEGLPTPDWRLVASAGETR 135

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   +  P ++KP + GS++G+  +   +      + +S   +  ++L E++++G E T
Sbjct: 136 AALQALGAPMIVKPSREGSTIGLTKVWTAEECEQAYVLAS--RYDPEVLCEEFIEGDETT 193

Query: 179 CGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
           C V+G      +L V  I  P+ + Y Y+ KY + ++ +  P+ +P +   E++R+   A
Sbjct: 194 CPVLGTGEGAHALPVIRIVAPEGN-YDYQNKYFTDDTKYHCPSGLPAEEEAEIRRIVVRA 252

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            + +GCRG SR+D +     RK F LEIN  PGMT  S+ P  A   G S+  L L ++ 
Sbjct: 253 FRTLGCRGWSRADIMIRASDRKPFLLEINTSPGMTGHSLVPMSARAIGVSYENLCLGILA 312

Query: 295 DAS 297
            A+
Sbjct: 313 SAA 315


>gi|119469216|ref|ZP_01612200.1| D-alanine-D-alanine ligase B, affects cell division
           [Alteromonadales bacterium TW-7]
 gi|119447468|gb|EAW28736.1| D-alanine-D-alanine ligase B, affects cell division
           [Alteromonadales bacterium TW-7]
          Length = 306

 Score =  342 bits (878), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 102/298 (34%), Positives = 158/298 (53%), Gaps = 7/298 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AV++GG S+EREVSL SG+A  +AL++ G      D        L  L  D  F  LHG
Sbjct: 11  VAVMLGGNSAEREVSLKSGQAVFNALQNCGVDAIAFDPQNRSLWELKELNVDRVFIALHG 70

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN-RFTMD 119
             GEDG VQ  LE + +PYT S +L SAL+MDK+R K +  S G+   P  +V+ +   D
Sbjct: 71  RGGEDGTVQGALEFMNLPYTGSNVLGSALAMDKIRCKHLFKSAGLSTAPYAVVDAKKGFD 130

Query: 120 SQHLISP--PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
           +  +++     ++KP   GSS+G+      Q +   L+   ++    Q+L+EQ++ G E 
Sbjct: 131 AHAIMAEFKKVMVKPSHEGSSIGMAQATTAQELEDALIN--AFKFDSQVLVEQWITGREF 188

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           T  V+GD    V E+  P + FY Y+ KY S  + +  PA +     +++Q ++  A   
Sbjct: 189 TVTVLGDEVQPVIEMTTP-NGFYDYQAKYQSNTTQYHCPANLSTHDTQQLQAMSLEAFDL 247

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           +G  G  R D + D      + LE+N  PGMT  S+ P  A   G SF +L++ ++E 
Sbjct: 248 VGASGWGRVDAMQDEQGN-FYLLEVNTVPGMTEKSLVPMAAKANGASFEQLVVRILEQ 304


>gi|300722061|ref|YP_003711341.1| D-alanine-D-alanine ligase B [Xenorhabdus nematophila ATCC 19061]
 gi|297628558|emb|CBJ89130.1| D-alanine-D-alanine ligase B, affects cell division [Xenorhabdus
           nematophila ATCC 19061]
          Length = 306

 Score =  342 bits (878), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 106/305 (34%), Positives = 166/305 (54%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL SG+A  + L++AG     +D        L        F  LHG
Sbjct: 5   VAVLLGGTSAEREVSLQSGQAIVTGLKEAGINAYSVDTKDFDVTKLKEEGFSKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117
             GEDG +Q +LE L++PYT SG++ASA+SMDK+R+KQ+     +PV P + +N      
Sbjct: 65  RGGEDGTLQGLLEFLQLPYTGSGVMASAVSMDKLRTKQLWQGSKLPVSPYVAINSQKFEQ 124

Query: 118 ------MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                  D    +  P ++KP   GSS+G+  +     +   L    ++ +   +L+E++
Sbjct: 125 VSDFQLQDYVQELGLPLMVKPNLEGSSVGMTKVNDYAELRGALAL--AFKYDTDVLVEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T G +GD +L    I  P   FY Y+ KY S  + +  P+ + ++  +E+  +A
Sbjct: 183 LFGPEYTVGFLGDEALPSIRIQAPDV-FYDYDAKYISNETQYFCPSGLSVEKEQELVDIA 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A++A+GCRG  R D + D      + LE N  PGMT  S+ P  A  AG+SF +L++ 
Sbjct: 242 SEAYKALGCRGWGRVD-IMDDGKGNFYLLEANTCPGMTSHSLVPLAARQAGFSFSQLVVR 300

Query: 292 MVEDA 296
           ++E A
Sbjct: 301 ILELA 305


>gi|325980958|ref|YP_004293360.1| D-alanine--D-alanine ligase [Nitrosomonas sp. AL212]
 gi|325530477|gb|ADZ25198.1| D-alanine--D-alanine ligase [Nitrosomonas sp. AL212]
          Length = 305

 Score =  342 bits (878), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 95/296 (32%), Positives = 164/296 (55%), Gaps = 6/296 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL SG+A   AL  +       D        L     D AF  LHG
Sbjct: 9   VAVLLGGRSAEREVSLQSGQAVLDALIRSEVDAYSFDPAEQALEDLLRQGFDRAFIALHG 68

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--M 118
            FGEDG +Q +LE + +PYT SG+++SAL+MDK R+K +  + G+P    +L++  +   
Sbjct: 69  RFGEDGTIQGVLEWMRLPYTGSGVMSSALAMDKWRTKLLWQAVGIPSPRYVLLHSDSNFE 128

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           +   L+  P ++KP + GS++G+  +     +      ++   +   +L E+++ G ELT
Sbjct: 129 EVSELLGLPLIVKPAREGSTIGLSKVTHKNDLLPAYELAA--QYDALVLAEEFIVGKELT 186

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             ++G+  L +  I +   + Y Y+ KY S ++ +  P+ +  ++  E+Q  A  A++ +
Sbjct: 187 VAILGETPLPIVRIEI-TGELYDYQAKYVSNDTRYFCPSGLSDELELEIQAQALQAYKVL 245

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           GC G  R D +    + + ++LE+N  PGMT  S+ P  A  AG SF +L++ +++
Sbjct: 246 GCHGWGRVDLILT-QTGQFYFLEVNTSPGMTGHSLVPMAAKTAGISFEDLVMRILD 300


>gi|307294492|ref|ZP_07574334.1| D-alanine/D-alanine ligase [Sphingobium chlorophenolicum L-1]
 gi|306878966|gb|EFN10184.1| D-alanine/D-alanine ligase [Sphingobium chlorophenolicum L-1]
          Length = 316

 Score =  342 bits (878), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 132/300 (44%), Positives = 191/300 (63%), Gaps = 5/300 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG S+ER VSLSSG+  A ALE  G +V++ID+DR V L L+  +PD+ FN LHG
Sbjct: 8   VAVLMGGWSAERLVSLSSGEGVAKALESRGHRVTRIDMDRDVALRLSETRPDVVFNALHG 67

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG VQ +++L+ + YTHSG+  S +++DK  +KQ +   G+P+    +V   ++  
Sbjct: 68  VPGEDGTVQGMMDLMGLTYTHSGLATSVIAIDKQLTKQALVPHGIPMPGGHIVPSASLFE 127

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSI--PLDLLQSSSWNHGDQLLIEQYVDGIELT 178
              +  PYV+KP+  GSS+G+ ++ +  +   P+       W H D+LL E Y+ G ELT
Sbjct: 128 GDPLPRPYVVKPVNEGSSVGVAIVTEGGNYGSPIGRDVEGPWLHFDELLAEPYIRGRELT 187

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             V+GD +L VTE+  PKS FY ++ KY+   + HV PA IP +I +  + +A  AHQ +
Sbjct: 188 TAVLGDEALLVTELR-PKSGFYDFDAKYTDGMTEHVCPAGIPQEIGEACKAIALRAHQLL 246

Query: 239 GCRGISRSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           GC+G SRSDF +D       +F LE+N QPGMTP+S+ PE AA  G  + EL+  +VEDA
Sbjct: 247 GCKGASRSDFRWDDTQGVEGLFLLEVNTQPGMTPLSLVPEQAAKLGIDYAELVERIVEDA 306


>gi|225023730|ref|ZP_03712922.1| hypothetical protein EIKCOROL_00594 [Eikenella corrodens ATCC
           23834]
 gi|224943612|gb|EEG24821.1| hypothetical protein EIKCOROL_00594 [Eikenella corrodens ATCC
           23834]
          Length = 320

 Score =  342 bits (878), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 112/299 (37%), Positives = 167/299 (55%), Gaps = 4/299 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG SSEREVSL SG A  +AL+  G    + D      L L      +AFNVLHG
Sbjct: 22  VAVLNGGFSSEREVSLDSGAAVLAALQSRGIDAHRFDPKEQDILQLKAQGFQVAFNVLHG 81

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--M 118
            +GEDG VQA+L+ + IPYT  G+ ASAL MDK R K +  + G+PV    +++  T   
Sbjct: 82  TYGEDGTVQALLDSIGIPYTGCGMAASALGMDKYRCKLIWQALGLPVPDFAVLHDDTDFA 141

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
             +  +  P  +KP   GSS+G++ +K+   +P    +    +   +++ E++VDG E T
Sbjct: 142 AVEAELGLPMFVKPAAEGSSVGVVKVKQPGELPKVYRELRERHLHGEIIAERFVDGGEYT 201

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           C V+G  +L    I +P ++FY Y+ KY   ++ +  P+ +      E++RLA    +AI
Sbjct: 202 CAVLGQQALPSIRI-IPATEFYDYDAKYFRDDTVYQCPSDLDAAGEAEIRRLAKAGFEAI 260

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           G RG  R DF     S K++ LEIN  PGMT  S+ P+ AA  G  F +L + ++  A+
Sbjct: 261 GGRGWGRVDF-LRSQSGKLYLLEINTVPGMTSHSLVPKAAAQTGLDFADLCVEVLSHAT 318


>gi|332531951|ref|ZP_08407835.1| D-alanine--D-alanine ligase [Pseudoalteromonas haloplanktis
           ANT/505]
 gi|332038578|gb|EGI75021.1| D-alanine--D-alanine ligase [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 306

 Score =  342 bits (878), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 102/298 (34%), Positives = 158/298 (53%), Gaps = 7/298 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL SG+A  +AL+++G      D        L  L  +  F  LHG
Sbjct: 11  VAVLLGGNSAEREVSLRSGQAVLNALQNSGIDAIAFDPQSRSLWELKELNVERVFIALHG 70

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN-RFTMD 119
             GEDG VQ  LE + +PYT S +L SAL+MDK+R K +  S G+   P  +V+ +   D
Sbjct: 71  RGGEDGTVQGALEFMNLPYTGSNVLGSALAMDKVRCKHLFKSAGLSTAPYTVVDAKKGFD 130

Query: 120 SQHLISP--PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
           ++ ++      ++KP   GSS+G+      Q +   L    ++   +Q+L+EQ++ G E 
Sbjct: 131 AKAIMDEFKKVMVKPSHEGSSIGMAQASTTQELEDALAN--AFKFDNQVLVEQWITGREF 188

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           T  V+GD    V E+  P + FY Y+ KY S  + +  PA +     K +Q ++  A   
Sbjct: 189 TITVLGDDVQPVIEMTTP-NGFYDYQAKYQSNTTQYHCPADLSEQDTKYLQAISLDAFDL 247

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           +G  G  R D + D      + LE+N  PGMT  S+ P  A   G +F +L++ ++E 
Sbjct: 248 VGASGWGRVDAMQDEQGN-FYLLEVNTVPGMTEKSLVPMAAKANGATFEQLVVRILEQ 304


>gi|311280928|ref|YP_003943159.1| D-alanine/D-alanine ligase [Enterobacter cloacae SCF1]
 gi|308750123|gb|ADO49875.1| D-alanine/D-alanine ligase [Enterobacter cloacae SCF1]
          Length = 306

 Score =  342 bits (878), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 113/305 (37%), Positives = 167/305 (54%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SG A  + L +AG     +D       +L       AF  LHG
Sbjct: 5   IAVLLGGTSAEREVSLNSGAAVLAGLREAGVDAYAVDPRDEDITLLKSKGFKKAFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR----- 115
             GEDG +Q +LEL  IPYT SG++ASA+SMDK+RSK +    G+PV P + + R     
Sbjct: 65  RGGEDGTLQGLLELTGIPYTGSGVMASAISMDKLRSKLLWQGAGLPVAPWVALTRAQFSQ 124

Query: 116 --FTMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                DSQ +  +  P ++KP + GSS+G+  +   +S  LD   + ++ H D++LIE++
Sbjct: 125 GLSAEDSQRIAALGLPLIVKPSREGSSVGMSKVS--ESRALDAALALAFQHDDEVLIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  V+G+  L    I  P   FY YE KY S  + +  P        +E++ L 
Sbjct: 183 LSGPEFTVAVVGEEILPSIRIQ-PAGTFYDYEAKYLSDETKYFCPGCEDPQREEEMKALV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A   +GC G  R D + D    +++ LE N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 242 LKAWNILGCSGWGRIDVMQDE-DGQLYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300

Query: 292 MVEDA 296
           +++ A
Sbjct: 301 ILDLA 305


>gi|289579362|ref|YP_003477989.1| D-alanine/D-alanine ligase [Thermoanaerobacter italicus Ab9]
 gi|289529075|gb|ADD03427.1| D-alanine/D-alanine ligase [Thermoanaerobacter italicus Ab9]
          Length = 359

 Score =  342 bits (878), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 99/345 (28%), Positives = 170/345 (49%), Gaps = 51/345 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           +AVL GG S E EVSL S K+  + L+   +++  + + +     L              
Sbjct: 6   IAVLFGGQSGEHEVSLMSAKSIINNLDKDKYEIYMVGITKKGEWYLYRGDVEKIETGEWE 65

Query: 49  ---------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81
                                         D+ F VLHG  GEDG +Q +LELL IPY  
Sbjct: 66  KEGIPATMGASTKYRGIITFGEGKNGFFPIDVVFPVLHGPNGEDGTIQGLLELLNIPYVG 125

Query: 82  SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL-------ISPPYVIKPLK 134
           + +L+SAL MDK+ +K++    G+P    ++V R  +            +  P  +KP  
Sbjct: 126 ANVLSSALCMDKVFTKRIFKEAGLPTPDFVVVYRKEIGDLETIKKKIEHLGYPCFVKPAN 185

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT--EI 192
            GSS+GI  +  ++ +P  L  ++   +  +LLIE+ ++  E+ C V+G+ + + +    
Sbjct: 186 LGSSVGITKVHNEEELPGALKLAA--KYDRKLLIEKGIEAREIECSVLGNENPEASVAGE 243

Query: 193 AVPKSDFYSYELKYSSLN-STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
            VP ++FY Y  KY     S  ++PA +P +  +E+++LA  A++A+  RG++R DFL D
Sbjct: 244 IVPSNEFYDYNAKYFDGGKSLLLIPAPLPDEKMEEIRKLAIKAYKALDLRGMARVDFLMD 303

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             +  V+  E+N  PG T +S++P++   +G S+  LL  ++  A
Sbjct: 304 RNTGTVYLNEVNTIPGFTKISMYPKLWEASGKSYSALLDDLINLA 348


>gi|297539589|ref|YP_003675358.1| D-alanine/D-alanine ligase [Methylotenera sp. 301]
 gi|297258936|gb|ADI30781.1| D-alanine/D-alanine ligase [Methylotenera sp. 301]
          Length = 312

 Score =  342 bits (877), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 108/303 (35%), Positives = 161/303 (53%), Gaps = 13/303 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S EREVSL SG A  +AL+  G      D        L     D  F  LHG
Sbjct: 13  VAVLLGGKSGEREVSLKSGGAVLAALQAQGIDAHGFDPRDKPLHDLEV--FDRVFINLHG 70

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--FTM 118
            +GEDG +Q  LE+L IPYT SG++ASA+ MDK R+K +  +  V      LV       
Sbjct: 71  RYGEDGCIQGALEMLHIPYTGSGVMASAIGMDKWRTKLLWRAMNVITPDFELVTATSDFA 130

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
             +  +  P  +KP   GSSLGI  +K+   +      ++       ++ E++++G E T
Sbjct: 131 AIEKSLGLPLFVKPANEGSSLGISKVKQAGGLQAAYKIAA--EADPLVIAEKFINGGEYT 188

Query: 179 CGVMGDA-----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
            G++GD      +L +  I VPK++FY +E KY   ++ ++ P  +  +   ++Q+ A  
Sbjct: 189 VGIIGDGKGGYQALPIIRI-VPKNEFYDFEAKYLRDDTEYLCPCGLSAEKEAQIQQEALQ 247

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           A + IGCRG  R DFL D      ++LE+N  PGMT  S+ P  A  AG SF +L++ ++
Sbjct: 248 AFRTIGCRGWGRVDFLMDDAGNH-YFLEVNTSPGMTDHSLVPMAAKAAGISFEQLVVRIL 306

Query: 294 EDA 296
           E A
Sbjct: 307 ELA 309


>gi|91786975|ref|YP_547927.1| D-alanine--D-alanine ligase [Polaromonas sp. JS666]
 gi|123165280|sp|Q12EL3|DDL_POLSJ RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|91696200|gb|ABE43029.1| D-alanine--D-alanine ligase [Polaromonas sp. JS666]
          Length = 338

 Score =  342 bits (877), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 104/307 (33%), Positives = 171/307 (55%), Gaps = 13/307 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG+S+ERE+SL SG+    AL   G      D        L   +    F  LHG
Sbjct: 24  VAVLMGGMSAEREISLMSGRGVLQALRSRGVDAHAFDPAERDISELKKDEFARCFIALHG 83

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG VQ  LELL IPYT SG++AS++++DK+ +K+V+ + G+P    +L+ R +  S
Sbjct: 84  RFGEDGTVQGALELLGIPYTGSGVMASSMAIDKVMTKRVMLAEGLPTPTYVLLRRGSYGS 143

Query: 121 QHL------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
             +      +  P ++KP + GSS+G+  + +   +   + Q+   +    +L EQ++ G
Sbjct: 144 ADVSAVPDKLGLPLIVKPAREGSSIGLTKVTERAGMADAVAQAEKLDAD--ILCEQFISG 201

Query: 175 IELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            E+TC V+G      +L V  I  P  + Y Y+ KY +  + +++P  +P      +Q+L
Sbjct: 202 DEVTCPVLGTGSEARALPVIRIVAPDGN-YDYQNKYFTDTTQYLVPCGLPEGEEAVIQQL 260

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
              A++ + CRG +R+D + D ++RK + LEIN  PGMT  S+ P  A  AG S+ +L +
Sbjct: 261 VLQAYRTLNCRGWARADVMIDKVTRKPYLLEINTSPGMTGHSLVPMSARAAGISYEDLCI 320

Query: 291 WMVEDAS 297
            +++  +
Sbjct: 321 EVLKTTA 327


>gi|323701728|ref|ZP_08113399.1| D-alanine/D-alanine ligase [Desulfotomaculum nigrificans DSM 574]
 gi|323533264|gb|EGB23132.1| D-alanine/D-alanine ligase [Desulfotomaculum nigrificans DSM 574]
          Length = 311

 Score =  342 bits (877), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 108/309 (34%), Positives = 183/309 (59%), Gaps = 18/309 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VL GG S+EREVSL SG+A   AL + G+ V +IDV   +   +   + +LAF  LHG
Sbjct: 5   VGVLCGGRSAEREVSLRSGEAVYQALLNCGYDVVKIDVGFDIAEQIKQHQIELAFLALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118
            +GEDG +Q +LELL+IPYT SG+LASA++++K+ +K++    G+P     ++ R  +  
Sbjct: 65  KYGEDGTIQGLLELLDIPYTGSGVLASAIAINKITTKKLFKLEGIPTPDFTVITRNEVSN 124

Query: 119 --------DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                    +  L+  P V+K    GS++GI  + + + +   + +S  ++    +L+E+
Sbjct: 125 LGLDHACKKALDLVGLPAVVKANTQGSTIGISFVHQAEQMGAAIEESLKYDQD--VLVEK 182

Query: 171 YVDGIELTCGVMGDA---SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227
           ++ G+E+T  V+G+    +L + EI    +  Y Y+ KY+   S H++P ++P +   ++
Sbjct: 183 FISGMEVTASVLGNQDPVALPLIEI-TSVTGVYDYQAKYTPGISDHIIPPRLPEETQNKI 241

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287
           ++LA  A Q +GCRG+ R DF+      +V+ LE+N  PGMT  S+FP+ A YAG  F +
Sbjct: 242 KQLAVKAFQVLGCRGLGRVDFMV--QGSEVYALEVNTLPGMTATSLFPDAARYAGMEFPQ 299

Query: 288 LLLWMVEDA 296
           L+  +V+ A
Sbjct: 300 LVDKLVKLA 308


>gi|315253166|gb|EFU33134.1| D-ala D-ala ligase [Escherichia coli MS 85-1]
          Length = 291

 Score =  342 bits (877), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 101/291 (34%), Positives = 152/291 (52%), Gaps = 13/291 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SG A  + L + G     +D        L  +     F  LHG
Sbjct: 5   IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119
             GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK +    G+PV P + + R   + 
Sbjct: 65  RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124

Query: 120 --------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P ++KP + GSS+G+  +  + ++   L    ++ H +++LIE++
Sbjct: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRL--AFQHDEEVLIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L    I  P   FY YE KY S  + +  PA +       +Q L 
Sbjct: 183 LSGPEFTVAILGEEILPSIRIQ-PSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAG 282
             A   +GC+G  R D + D    + + LE N  PGMT  S+ P  A  AG
Sbjct: 242 LKAWTTLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAG 291


>gi|94498828|ref|ZP_01305372.1| D-alanine--D-alanine ligase [Sphingomonas sp. SKA58]
 gi|94421716|gb|EAT06773.1| D-alanine--D-alanine ligase [Sphingomonas sp. SKA58]
          Length = 321

 Score =  342 bits (877), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 128/300 (42%), Positives = 188/300 (62%), Gaps = 5/300 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG S+ER VSLSSG+  A ALE  G KV++ID+DR+V   LA  K D+ FN LHG
Sbjct: 8   VAVLMGGWSAERPVSLSSGEGVAKALESRGHKVTRIDMDRNVAQRLAETKADVIFNALHG 67

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG VQ +++L+ + YTHSG+  S +++DK  +KQ +   G+P+    +V   ++ +
Sbjct: 68  VPGEDGTVQGMMDLMGLTYTHSGLATSVIAIDKQLTKQALVPHGIPMPGGHVVESESLFT 127

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSI--PLDLLQSSSWNHGDQLLIEQYVDGIELT 178
              +  PYV+KP+  GSS+G+ ++  + +   P+       W    +LL E Y+ G ELT
Sbjct: 128 ADPLPRPYVLKPVNEGSSVGVAIVTAEGNYGNPIARDAVGPWQDFPELLAEPYIRGRELT 187

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             V+GD +L VTE+  PKS FY ++ KY+   + HV PA IP DI +  + +A  AHQ +
Sbjct: 188 TAVLGDEALLVTELR-PKSGFYDFDAKYTDGMTEHVCPADIPPDISEACKAIALRAHQLL 246

Query: 239 GCRGISRSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           GC+G SR+DF +D       ++ LE+N QPGMTP+S+ PE AA  G  +  L+  +VE+A
Sbjct: 247 GCKGASRADFRWDDERGLNGLYLLEVNTQPGMTPLSLVPEQAAKLGIDYATLVETIVEEA 306


>gi|148826247|ref|YP_001291000.1| D-alanine--D-alanine ligase [Haemophilus influenzae PittEE]
 gi|190359137|sp|A5UCW6|DDL_HAEIE RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|148716407|gb|ABQ98617.1| D-alanine--D-alanine ligase [Haemophilus influenzae PittEE]
          Length = 297

 Score =  341 bits (876), Expect = 6e-92,   Method: Composition-based stats.
 Identities = 110/297 (37%), Positives = 166/297 (55%), Gaps = 10/297 (3%)

Query: 4   LMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFG 63
           L+GG S+EREVS +SGKA   AL   G+    ID        L     + AFN+LHG  G
Sbjct: 2   LLGGTSAEREVSFNSGKAVLEALLKQGYNAHPIDPKEYNVANLKKDGFNRAFNILHGRGG 61

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH- 122
           EDG +Q +LE + +PYT  G++ASAL+MDKMR+K +  + G+PV    +V R T      
Sbjct: 62  EDGTMQGLLEQIGLPYTGCGVMASALTMDKMRTKMLWKAFGLPVADMKVVTRETFAELDP 121

Query: 123 -----LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
                 +  P ++KP   GSS+G+  +K  + +   +  +  +   + +LIE+++ G EL
Sbjct: 122 QAVVAKLGLPLMVKPSLEGSSVGLTKVKAVEELKSAVEYALKF--DNTILIEEWLAGDEL 179

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           T  V+ +  L    I VP+ +FY YE KY S N+ +  PA +  +  +E+  L   A+ A
Sbjct: 180 TVSVLDNQVLPAIRI-VPEGEFYDYEAKYISDNTQYFCPAGLTPEREQELAILVKRAYDA 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           +GCRG SR D + D        +E+N  PGMT  S+FP+ AA  G SF +L++ ++E
Sbjct: 239 VGCRGWSRIDVMCDAKGN-FRLVEVNTNPGMTSHSLFPKSAATVGISFEQLVVKILE 294


>gi|56476225|ref|YP_157814.1| D-alanine--D-alanine ligase [Aromatoleum aromaticum EbN1]
 gi|81358258|sp|Q5P6Z8|DDL_AZOSE RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|56312268|emb|CAI06913.1| D-alanine--D-alanine ligase (EC 6.3.2.4) (D-alanylalanine
           synthetase) (D-Ala-D-Ala ligase), gene: DDL OR DDLB OR
           NE0994 [Aromatoleum aromaticum EbN1]
          Length = 309

 Score =  341 bits (876), Expect = 6e-92,   Method: Composition-based stats.
 Identities = 107/298 (35%), Positives = 163/298 (54%), Gaps = 6/298 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL SG A  +AL+ AG      D  +    +L     D AF  LHG
Sbjct: 13  VAVLLGGTSAEREVSLMSGGAVLAALQAAGVDAHGFDPAQQDLHILKEQGFDRAFIALHG 72

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG VQ +LELL+IPYT SG++ASAL+MDK R+K V ++CG+P     ++   T   
Sbjct: 73  RGGEDGTVQGLLELLKIPYTGSGVMASALAMDKWRTKMVWAACGLPTPRYAILAGDTDWE 132

Query: 121 Q--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                +  P  +KP+  GSS+G   +     +     +++ +   D +L E+++ G ELT
Sbjct: 133 AVVAELGLPIFVKPVHEGSSMGATKVTAASQLKAAWERAARF--DDLVLAEEFIVGAELT 190

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              + + +L V  I  P    Y Y+ KY +  + ++ P+ +P +  + +Q L   + +A+
Sbjct: 191 VPFLAERALPVIRIEAP-GGKYDYQNKYFTDETRYLCPSGLPAEQEQALQALVMKSARAL 249

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           GCRG  R+D +      + + LE+N  PGMT  S+ P  A   G  F  L L ++EDA
Sbjct: 250 GCRGWGRADLMLTG-DGRPYLLEMNTSPGMTGHSLVPMAAKAVGLDFTALCLAILEDA 306


>gi|302391535|ref|YP_003827355.1| D-alanine/D-alanine ligase [Acetohalobium arabaticum DSM 5501]
 gi|302203612|gb|ADL12290.1| D-alanine/D-alanine ligase [Acetohalobium arabaticum DSM 5501]
          Length = 311

 Score =  341 bits (876), Expect = 7e-92,   Method: Composition-based stats.
 Identities = 111/308 (36%), Positives = 183/308 (59%), Gaps = 15/308 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-SVGLVLAHLKPDLAFNVLH 59
           +AV+ GG S ER++SL +GKA   ALE  G  V  +D +  +    L   + D+AF  LH
Sbjct: 5   VAVIRGGRSKERDISLKTGKAVYEALETEGVDVIALDPEEENFYQQLTTEEIDVAFIALH 64

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G +GEDG +Q + E+++IPYT SG+LAS+L+MDK+ SK++    GV      +++R   D
Sbjct: 65  GRYGEDGTIQGLFEMMDIPYTGSGVLASSLAMDKIISKKLFQQEGVLTPEFKVISRNNWD 124

Query: 120 SQH---------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            Q           +  P V+KP   GSSLG+ +IKK +++   +   +++ + +++L+E+
Sbjct: 125 QQAEKLLTELKIELDLPVVVKPALEGSSLGLSIIKKRENLATAV--DTAFEYDNEVLVEK 182

Query: 171 YVDGIELTCGVMGDASLDVTEIAV--PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           Y+ G E+T G++G+  L V  I    PK+  Y +E KY+   +  V+PA++  +IY + Q
Sbjct: 183 YIAGKEITIGILGNQDLSVLPIIEIKPKTGAYDFEAKYTKGMTEFVIPAQLEEEIYNQAQ 242

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           ++A  A++ + C G++R+D +      K + LE+N  PGMT  S+ P+ A  AG  F EL
Sbjct: 243 KIANKAYRVLKCSGMARADLIVSK-EGKPYVLEVNTIPGMTETSLLPQAAQAAGIDFPEL 301

Query: 289 LLWMVEDA 296
           +L ++E A
Sbjct: 302 VLEILEYA 309


>gi|297545503|ref|YP_003677805.1| D-alanine/D-alanine ligase [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
 gi|296843278|gb|ADH61794.1| D-alanine/D-alanine ligase [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
          Length = 359

 Score =  341 bits (875), Expect = 8e-92,   Method: Composition-based stats.
 Identities = 99/345 (28%), Positives = 171/345 (49%), Gaps = 51/345 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           +AVL GG S E EVSL S K+  + L+   +++  + + +     L              
Sbjct: 6   IAVLFGGQSGEHEVSLMSAKSIINNLDKDKYEIYMVGITKKGEWYLYRGDVEKIETGEWE 65

Query: 49  ---------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81
                                         D+ F VLHG  GEDG +Q +LELL+IPY  
Sbjct: 66  KEGIPATMGASTKYRGIITFEEGKNVFFPIDVVFPVLHGPNGEDGTIQGLLELLDIPYVG 125

Query: 82  SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL-------ISPPYVIKPLK 134
           + +L+SAL MDK+ +K++    G+P    ++V R  +            +  P  +KP  
Sbjct: 126 ANVLSSALCMDKVFTKRIFKEAGLPTPDFVVVYRKEIGDLETIKKKIEHLGYPCFVKPAN 185

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT--EI 192
            GSS+GI  +  ++ +P  L  ++   +  +LLIE+ ++  E+ C V+G+ + + +    
Sbjct: 186 LGSSVGITKVHNEEELPGALKLAA--KYDRKLLIEKGIEAREIECSVLGNENPEASVAGE 243

Query: 193 AVPKSDFYSYELKYSSLN-STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
            VP ++FY Y  KY     S  ++PA +P +  +E+++LA  A++A+  RG++R DFL D
Sbjct: 244 IVPSNEFYDYNAKYFDGGKSLLLIPAPLPDEKMEEIRKLAIKAYRALDLRGMARVDFLMD 303

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             +  V+  E+N  PG T +S++P++   +G S+  LL  ++  A
Sbjct: 304 RNTGTVYLNEVNTIPGFTKISMYPKLWEASGKSYSALLDDLINLA 348


>gi|160896919|ref|YP_001562501.1| D-alanine--D-alanine ligase [Delftia acidovorans SPH-1]
 gi|229485953|sp|A9BUK8|DDL_DELAS RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|160362503|gb|ABX34116.1| D-alanine--D-alanine ligase [Delftia acidovorans SPH-1]
          Length = 326

 Score =  341 bits (875), Expect = 8e-92,   Method: Composition-based stats.
 Identities = 104/303 (34%), Positives = 161/303 (53%), Gaps = 9/303 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL SG     AL   G      D        L     D  F  LHG
Sbjct: 16  VAVLLGGRSAEREVSLMSGTGVLKALLSHGVDAHAFDPAERDLGELKKEGFDRCFIALHG 75

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--FTM 118
            +GEDG VQ  LELL IPYT  G++AS+++MDK+ +K++    G+P     LV     T 
Sbjct: 76  RYGEDGTVQGALELLGIPYTGPGVMASSIAMDKIMTKRIWRFEGLPTPDWRLVASAGETR 135

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   +  P ++KP + GS++G+  +   +      + +S   +  ++L E++++G E T
Sbjct: 136 AALQALGAPMIVKPSREGSTIGLTKVWTAEECDQAYVLAS--RYDPEVLCEEFIEGDETT 193

Query: 179 CGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
           C V+G      +L V  I  P+ + Y Y+ KY + ++ +  P+ +P +   E++R+   A
Sbjct: 194 CPVLGTGEGAHALPVIRIVAPEGN-YDYQNKYFTDDTKYHCPSGLPAEEEAEIRRIVVRA 252

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            + +GCRG SR+D +     RK F LEIN  PGMT  S+ P  A   G S+  L L ++ 
Sbjct: 253 FRTLGCRGWSRADIMIRASDRKPFLLEINTSPGMTGHSLVPMSARAIGVSYENLCLGILA 312

Query: 295 DAS 297
            A+
Sbjct: 313 SAA 315


>gi|30248997|ref|NP_841067.1| D-alanine--D-alanine ligase [Nitrosomonas europaea ATCC 19718]
 gi|39930869|sp|Q82VS0|DDL_NITEU RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|30138614|emb|CAD84905.1| D-alanine--D-alanine ligase [Nitrosomonas europaea ATCC 19718]
          Length = 305

 Score =  341 bits (875), Expect = 8e-92,   Method: Composition-based stats.
 Identities = 107/296 (36%), Positives = 164/296 (55%), Gaps = 6/296 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+ERE+SL SG+A  +AL+ +       D        L     D  F  LHG
Sbjct: 9   VAVLLGGRSAEREISLRSGQAVLAALQRSRVNAHAFDPAGQPLENLLQQGFDRVFIALHG 68

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--M 118
            +GEDG VQ  LEL+E+PYT SGILASAL+MDK R+K +  + G+     ++++  +   
Sbjct: 69  RYGEDGSVQGALELMELPYTGSGILASALAMDKWRTKMIWQAAGINTPDYVMLDASSRFR 128

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           D    +  P +IKP + GS+LG+  +  +Q        ++   +   +L EQ++ GIELT
Sbjct: 129 DVADRLGLPLIIKPAREGSTLGLNKVDNEQDFRSAYQAAA--EYDSLVLAEQFIQGIELT 186

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             ++ D  L +  I V +   Y Y+ KY S ++ +  P+ +   +   +Q  A  AH+ +
Sbjct: 187 AAILDDMPLPLVRIDVAE-GLYDYQAKYFSESTRYTCPSGLSAALTTRIQEQALYAHRIL 245

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           GC G SR D + D  + + F+LE N  PGMT  S+ P  A  AG SF EL++ ++E
Sbjct: 246 GCTGWSRVDLILDE-NEQPFFLETNTSPGMTDHSLVPMAAKAAGISFDELVVQILE 300


>gi|119944905|ref|YP_942585.1| D-alanine--D-alanine ligase [Psychromonas ingrahamii 37]
 gi|119863509|gb|ABM02986.1| D-alanine--D-alanine ligase [Psychromonas ingrahamii 37]
          Length = 306

 Score =  341 bits (875), Expect = 9e-92,   Method: Composition-based stats.
 Identities = 103/301 (34%), Positives = 159/301 (52%), Gaps = 10/301 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL SGKA  +AL   G     ID      L L  L  D  F  LHG
Sbjct: 8   VAVLFGGHSAEREVSLRSGKAVLNALLRQGIDAYAIDPKFDDLLQLKQLNFDRVFIALHG 67

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG++Q  L  L+IPYT S +L+SA++MDK ++KQ+  S  +P     ++ +   D 
Sbjct: 68  RGGEDGVIQGFLSTLDIPYTGSDVLSSAIAMDKSKTKQIWQSLQLPTAQYRIIIKEAFDP 127

Query: 121 QHL------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
                    +S   ++KP+  GSSLG+  +   + +   L  + ++     +L+E ++ G
Sbjct: 128 AQAEQILAGLSGIAIVKPVSEGSSLGMAKVSTAKELIKAL--TEAFKFDQTVLLETWITG 185

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
            E T  ++   +L    +    + FY Y+ KY S ++ +  P  +  +   E+ +LA  A
Sbjct: 186 QEYTVSILNGKALPAIRMHT-NNTFYDYQAKYQSTDTQYYCPCGLEQEKLAELNQLAVDA 244

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             AIGCRG  R DF+ D    + + LE+N  PGMT  S+ P+ A  AGY F +L + +++
Sbjct: 245 FAAIGCRGWGRVDFMLDKS-GQWYLLEVNTVPGMTETSLVPKAAKEAGYDFDQLTIEILK 303

Query: 295 D 295
            
Sbjct: 304 Q 304


>gi|258515376|ref|YP_003191598.1| D-alanine--D-alanine ligase [Desulfotomaculum acetoxidans DSM 771]
 gi|257779081|gb|ACV62975.1| D-alanine/D-alanine ligase [Desulfotomaculum acetoxidans DSM 771]
          Length = 314

 Score =  341 bits (875), Expect = 9e-92,   Method: Composition-based stats.
 Identities = 112/309 (36%), Positives = 179/309 (57%), Gaps = 17/309 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VL+GG S+EREVSL +G+A   AL   G++V +IDV  ++   +     D+AF  LHG
Sbjct: 5   IGVLLGGKSAEREVSLRTGEAIYKALLGLGYQVVKIDVQENIAERIKEESIDMAFLALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG +Q +LE+L IPYT SG+LASAL+MDK+ +K+++    +P     L+ R + ++
Sbjct: 65  KYGEDGCIQGLLEILNIPYTGSGVLASALAMDKIATKRMLLQAKLPTAEFSLIRRSSYNN 124

Query: 121 QHL----------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +            +  P V+K    GS++GI  +  ++ +P  L    ++ +    LIEQ
Sbjct: 125 ETKEEICQTLFKYMPLPLVVKAPTQGSTIGISFVNNEEQLPDAL--EEAFRYDPIALIEQ 182

Query: 171 YVDGIELTCGVMGD---ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227
           ++ G E+T  V+G+    +L + EI V  +  Y Y+ KY+   S H++P ++  ++ K V
Sbjct: 183 FISGTEVTATVLGNNQPEALPLIEI-VSNTGVYDYKAKYTVGLSDHIMPPRLKEEVQKNV 241

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287
           Q LA    + +GC G++R DF+ D  S   + LEIN  PGMT  S+ P+ A  AG SF +
Sbjct: 242 QELAVKVFKTMGCSGLARVDFIVDANSN-PYILEINTIPGMTETSLAPDAARAAGISFTD 300

Query: 288 LLLWMVEDA 296
           L   M++ A
Sbjct: 301 LTDRMIKFA 309


>gi|315125605|ref|YP_004067608.1| D-alanine-D-alanine ligase B, affects cell division
           [Pseudoalteromonas sp. SM9913]
 gi|315014118|gb|ADT67456.1| D-alanine-D-alanine ligase B, affects cell division
           [Pseudoalteromonas sp. SM9913]
          Length = 306

 Score =  341 bits (875), Expect = 9e-92,   Method: Composition-based stats.
 Identities = 103/298 (34%), Positives = 157/298 (52%), Gaps = 7/298 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+ER+VSL SG+A  +AL D G      D        L  L  D  F  LHG
Sbjct: 11  VAVLLGGNSAERDVSLKSGQAVLNALLDVGIDAIAFDPQNRSLWELKSLYVDRVFIALHG 70

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---FT 117
             GEDG VQ  LE + +PYT S +L SAL+MDK+R K +  S G+   P  +V+    F 
Sbjct: 71  RGGEDGTVQGALEFMNLPYTGSNVLGSALAMDKIRCKHLFKSAGLSTAPYAVVDAKKGFD 130

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            ++        ++KP   GSS+G+      + +   L  ++++    Q+L+EQ++ G E 
Sbjct: 131 ANAIMAQFKKVMVKPSHEGSSIGMAQASSAEELEDAL--TNAFKFDSQVLVEQWITGREF 188

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           T  V+GD    V E++ P + FY Y+ KY S ++ +  PA +     +++Q +A  A   
Sbjct: 189 TITVLGDEVQPVIEMSTP-NGFYDYQAKYQSSSTQYHCPADLSPSDTQKLQAMALDAFDL 247

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           +G  G  R D + D      + LE+N  PGMT  S+ P  A   G SF +L++ ++E 
Sbjct: 248 VGASGWGRVDAMQDEQ-GHFYLLEVNTVPGMTEKSLVPMAAKANGASFEQLVVRILEQ 304


>gi|325275004|ref|ZP_08141000.1| D-alanine--D-alanine ligase [Pseudomonas sp. TJI-51]
 gi|324099861|gb|EGB97711.1| D-alanine--D-alanine ligase [Pseudomonas sp. TJI-51]
          Length = 318

 Score =  341 bits (875), Expect = 9e-92,   Method: Composition-based stats.
 Identities = 110/302 (36%), Positives = 163/302 (53%), Gaps = 6/302 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL SG A   AL  AG  V  IDV   +   L + K D AF +LHG
Sbjct: 20  VAVLYGGKSAEREVSLKSGAAVIDALTSAGVDVVAIDVGDDLLDRLQNEKIDRAFIILHG 79

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTM 118
             GEDG +Q +LE L IPYT SGILASAL+MDK+R+KQV  S G+P     ++      +
Sbjct: 80  RGGEDGSMQGLLECLGIPYTGSGILASALAMDKLRTKQVWQSLGIPTPRHAVLASESDCL 139

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   +  P ++KP   GSS+G+  +   + +      ++   +  Q+L+EQ++ G E T
Sbjct: 140 QASTELGFPLIVKPAHEGSSIGMAKVNSAEELIAAWQDAA--QYDSQVLVEQWIHGPEFT 197

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             V+    L    +  P   FY Y+ KY + ++ + +P  +     +E+  L   A  A+
Sbjct: 198 IAVLRGQVLPPIALGTPHV-FYDYDAKYIANDTQYRIPCGLDSAKEQELIDLTARACDAV 256

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           G  G  R D + D   R  + LE+N  PGMT  S+ P  A  AG  F++L+L ++ ++  
Sbjct: 257 GIEGWGRLDVMQDEQGR-FWLLEVNTAPGMTDHSLVPMAARAAGLDFQQLVLAILAESVA 315

Query: 299 LR 300
            R
Sbjct: 316 TR 317


>gi|329118777|ref|ZP_08247475.1| D-alanine-D-alanine ligase B [Neisseria bacilliformis ATCC
           BAA-1200]
 gi|327465124|gb|EGF11411.1| D-alanine-D-alanine ligase B [Neisseria bacilliformis ATCC
           BAA-1200]
          Length = 303

 Score =  341 bits (875), Expect = 9e-92,   Method: Composition-based stats.
 Identities = 109/298 (36%), Positives = 163/298 (54%), Gaps = 6/298 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSER+VSL SG+A  +AL + G      D   +    L     D AFN+LHG
Sbjct: 7   VAVLMGGFSSERQVSLDSGRAVLAALREKGVDAHAFDPKETPLGGLKTQGFDCAFNILHG 66

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--M 118
            FGEDG VQ  LE L I YT  G+LASA+ MDK R K +    G+PV    ++   +   
Sbjct: 67  IFGEDGTVQGALEALGIRYTGCGVLASAVGMDKYRCKLLWKGLGLPVPDYEVLREDSDFD 126

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
             +  +  P  +KP   GSS+G++ IK  +   L  +      +  +++ E+++ G E T
Sbjct: 127 AVERKLGLPLFVKPANEGSSVGVVKIK--EKGRLKNVYRELRQYKGEIIAEKFIGGGEYT 184

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           C ++G  +L    I +P ++FY  E KY   ++ ++ P+ +     K+++ L   A  AI
Sbjct: 185 CAILGGEALPSVRI-IPATEFYDQEAKYDRDDTVYLCPSDLSEADEKQMRELTVRAFDAI 243

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           G RG  R DFL D  + +++ LE N  PGMT  S+ P+ AA AG  F +L L +++ A
Sbjct: 244 GGRGWGRIDFLKDK-NGRLYLLEANTLPGMTSHSLVPKAAAQAGIGFADLCLRILQTA 300


>gi|302877581|ref|YP_003846145.1| D-alanine/D-alanine ligase [Gallionella capsiferriformans ES-2]
 gi|302580370|gb|ADL54381.1| D-alanine/D-alanine ligase [Gallionella capsiferriformans ES-2]
          Length = 631

 Score =  340 bits (874), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 110/298 (36%), Positives = 158/298 (53%), Gaps = 6/298 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL SG A  ++L  +G      D        L     D  F  LHG
Sbjct: 335 VAVLFGGRSAEREVSLKSGAAVLASLLRSGVDAHAFDPASRSLQELQEQGFDRVFIALHG 394

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--M 118
            FGEDG VQ  LELL IPYT SG++AS+L MDK RSK V  + G+PV   +++   +  +
Sbjct: 395 RFGEDGTVQGALELLGIPYTGSGVMASSLGMDKWRSKLVWQAGGLPVPDFMMLAEQSEPL 454

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           D    +  P  +KP   GSS+GI  +K    +     +++   H   ++ E+++ G E T
Sbjct: 455 DVIGKLGLPLFVKPANEGSSVGISKVKAVGELQAAYREAA--RHDPLVIAERFIGGGEYT 512

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             ++GD  L V +I  P ++FY +E KY   ++ +  P+ +      ++Q LA  A   I
Sbjct: 513 VAILGDQVLPVIKIE-PANEFYDFEAKYLRDDTCYRCPSGLDAASEAKMQGLAQAAFALI 571

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           G +G  R DFL      + + LE N  PGMT  S+ P  A  AG SF EL+L ++  A
Sbjct: 572 GGQGWGRVDFLMSEA-GQPYVLEANTSPGMTDHSLVPMAARQAGISFDELVLRVLGMA 628


>gi|104783451|ref|YP_609949.1| D-alanine--D-alanine ligase [Pseudomonas entomophila L48]
 gi|122401969|sp|Q1I5C0|DDL_PSEE4 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|95112438|emb|CAK17165.1| D-alanine-D-alanine ligase B [Pseudomonas entomophila L48]
          Length = 318

 Score =  340 bits (874), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 113/302 (37%), Positives = 165/302 (54%), Gaps = 6/302 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL SG A   AL  AG  V  IDV   +   L + K D AF +LHG
Sbjct: 20  VAVLYGGKSAEREVSLKSGAAVIEALTSAGVDVVAIDVGDDLLARLQNEKIDRAFIILHG 79

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTM 118
             GEDG +Q +LE L IPYT SGILASAL+MDK+R+KQV  S G+P     ++   +  +
Sbjct: 80  RGGEDGSMQGLLECLGIPYTGSGILASALAMDKLRTKQVWQSLGIPTPRHAVLASEQDCV 139

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   +  P ++KP   GSS+G+  +  +Q +      ++   +  Q+L+EQ++ G E T
Sbjct: 140 AASAELGFPLIVKPAHEGSSIGMAKVNSEQELVAAWKDAA--KYDSQVLVEQWIHGPEFT 197

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             V+    L    +  P   FY Y+ KY + ++ + +P  +     +E+  L   A  AI
Sbjct: 198 IAVLRGQVLPPIALGTPHV-FYDYDAKYIANDTQYRIPCGLDSVKEQELIDLTARACDAI 256

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           G  G  R D + D   R  + LE+N  PGMT  S+ P  A  AG  F++L+L ++ D+  
Sbjct: 257 GIEGWGRLDVMQDEQGR-FWLLEVNTAPGMTDHSLVPMAARAAGLDFQQLVLAILADSVA 315

Query: 299 LR 300
            R
Sbjct: 316 TR 317


>gi|71909108|ref|YP_286695.1| D-alanine--D-alanine ligase [Dechloromonas aromatica RCB]
 gi|123626568|sp|Q47AA6|DDL_DECAR RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|71848729|gb|AAZ48225.1| D-alanine--D-alanine ligase [Dechloromonas aromatica RCB]
          Length = 301

 Score =  340 bits (874), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 103/299 (34%), Positives = 165/299 (55%), Gaps = 8/299 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL+SG    +AL+  G      D        L     D AF  LHG
Sbjct: 7   VAVLFGGTSAEREVSLNSGSRVLAALQGQGIDAHAFDPAEQPLDALK--GYDRAFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--M 118
             GEDG +Q  LE++ IPYT SG+LASAL+MDK R+K +  + G+ +    L+   +   
Sbjct: 65  RHGEDGTIQGALEVMHIPYTGSGVLASALAMDKFRTKLMWRAAGLAIPEYALLTADSDFA 124

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           D +  +  P  +KP + GSS+G+  +K+  ++     +++   H   ++ E+ V G E T
Sbjct: 125 DIEEELGLPLFVKPAREGSSIGVTKVKERGALKAAYEEAA--RHDPLVIAEKGVMGGEYT 182

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
            G++GD ++ + +I  P +++Y YE KY+  ++ ++ P  +P     E+++ A  A + +
Sbjct: 183 VGIIGDEAMPIIKIE-PATEWYDYEAKYNRDDTRYLCPCGLPEAKEMEIRKGALEAFRIL 241

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           G RG  R DFL D    K ++LE+N  PGMT  S+ P  A   G  +  L+  ++E A+
Sbjct: 242 GGRGWGRVDFLMDE-DGKYYFLEVNTAPGMTDHSLVPMAARVNGMDYPTLVRRVLELAA 299


>gi|134095969|ref|YP_001101044.1| D-alanine--D-alanine ligase [Herminiimonas arsenicoxydans]
 gi|190359141|sp|A4G8T6|DDL_HERAR RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|133739872|emb|CAL62923.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetase B)
           (D-Ala-D-Ala ligase B) [Herminiimonas arsenicoxydans]
          Length = 334

 Score =  340 bits (874), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 112/308 (36%), Positives = 160/308 (51%), Gaps = 13/308 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VL GG S+EREVSL SGK   +AL+  G      D        LA  K D  F  LHG
Sbjct: 15  VGVLFGGRSAEREVSLMSGKGVLAALQSKGVDAHAFDPAERSLAELAAEKFDRVFIALHG 74

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
           ++GEDG +Q  LE L IPYT  G++ASA+SMDK+ +K+V  S GVP     +++  T  +
Sbjct: 75  SYGEDGTLQGALEQLGIPYTGPGVMASAISMDKVMTKRVCLSHGVPTPRFTVLDAETTSA 134

Query: 121 QHL------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
             L         P ++K    GS++GI  ++  + +       + +     +L+EQ+V G
Sbjct: 135 AQLQSVAAEFGLPLMLKAPHEGSTIGIAKVETAEGMQAGFDLCAKYE--AVVLVEQFVKG 192

Query: 175 IELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            ELT  V+G      +L + EI  P+ + Y YE KY S ++ ++ PA       K VQ L
Sbjct: 193 RELTVPVIGSGRNARALPIVEIRAPQGN-YDYEHKYFSNDTEYLCPAPFDEAFTKRVQAL 251

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A  A  A+GC G SR DF+      + F LEIN  PGMT  S+ P  A  AG  + +L +
Sbjct: 252 AVSAFNAVGCTGWSRVDFMVRASDNEPFLLEINTSPGMTSHSLVPMSAKVAGTGYEDLCI 311

Query: 291 WMVEDASC 298
            ++  A  
Sbjct: 312 EILRSAKT 319


>gi|126735387|ref|ZP_01751133.1| D-alanine--D-alanine ligase [Roseobacter sp. CCS2]
 gi|126715942|gb|EBA12807.1| D-alanine--D-alanine ligase [Roseobacter sp. CCS2]
          Length = 292

 Score =  340 bits (874), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 138/298 (46%), Positives = 188/298 (63%), Gaps = 8/298 (2%)

Query: 5   MGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGE 64
           MGG S+ER+VSLS+G+ CA+AL DA   V ++D    V   L  + PD+ FN LHG +GE
Sbjct: 1   MGGPSAERDVSLSTGRECAAALRDAECNVIEVDAGPDVAARLIEIAPDVVFNALHGRWGE 60

Query: 65  DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI 124
           DG +Q +LE L+IPYTHSG+LASAL++DK R+K V    G+PV  SIL +   + + H++
Sbjct: 61  DGAIQGVLEWLQIPYTHSGVLASALTLDKQRTKDVYRKVGLPVVDSILASADAVRAAHVM 120

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
            PPYV+KP   GSS+GI ++ +  + P  L      +  D++++E +  G ELT  VMGD
Sbjct: 121 PPPYVVKPYNEGSSVGIYIVNEGANGPPQLAD----DMPDEVMVEAFAPGRELTTTVMGD 176

Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244
            +L VT+I      +Y Y  KY+   S H LPA IP+DI+      A  AH A+GCRG+S
Sbjct: 177 RALTVTDIIT--DGWYDYHAKYAPGGSRHELPADIPVDIFDACMDYALRAHDALGCRGVS 234

Query: 245 RSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           R+DF +D       +  LE N QPGMTP S+ PE AA+ G +F E   W+VEDASC R
Sbjct: 235 RTDFRWDEARGLDGLILLETNTQPGMTPTSLTPEQAAHVGIAFPEFCRWLVEDASCDR 292


>gi|301630393|ref|XP_002944306.1| PREDICTED: d-alanine--D-alanine ligase-like [Xenopus (Silurana)
           tropicalis]
          Length = 334

 Score =  340 bits (874), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 109/303 (35%), Positives = 159/303 (52%), Gaps = 9/303 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSEREVSL SG     AL   G      D   +    L        F  LHG
Sbjct: 20  VAVLMGGDSSEREVSLMSGGGVLQALRARGVDAHAFDPAHASLADLKTHGYTRCFIALHG 79

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTM 118
             GEDG VQ  LELL IPYT SG++AS+++MDK+ +K++    G+P     LV     T 
Sbjct: 80  RHGEDGTVQGALELLGIPYTGSGVMASSIAMDKIMTKRIWRFEGLPTPDWRLVASAAETA 139

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   +  P ++KP + GS++G+  +            ++   H  ++L EQ++DG E T
Sbjct: 140 QALAALGAPMIVKPAREGSTIGLTKVTSPGQCQQAYRLAA--QHDPEVLCEQFIDGDETT 197

Query: 179 CGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
           C V+G      +L V  I  P+ + Y Y+ KY +  + +  P+ +P    + +QRL   A
Sbjct: 198 CPVLGQGASATALPVIRIVAPEGN-YDYQNKYFTDVTQYHCPSGLPEAEERAIQRLVERA 256

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           ++ +GCRG +R+D +     R+ F LEIN  PGMT  S+ P  A  AG S+  L L ++ 
Sbjct: 257 YRTLGCRGWARADIMVRASDRQPFLLEINTSPGMTGHSLVPMSARAAGTSYEALCLRILA 316

Query: 295 DAS 297
            AS
Sbjct: 317 SAS 319


>gi|114773358|ref|ZP_01450562.1| D-alanine--D-alanine ligase [alpha proteobacterium HTCC2255]
 gi|114546292|gb|EAU49203.1| D-alanine--D-alanine ligase [alpha proteobacterium HTCC2255]
          Length = 304

 Score =  340 bits (873), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 128/302 (42%), Positives = 183/302 (60%), Gaps = 8/302 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VL GG S EREVSL SG   ASAL   G+ VS ID D ++   +    PD+ FN LHG
Sbjct: 9   VTVLNGGPSVEREVSLVSGNEIASALRGEGYIVSIIDADENLAPKITASNPDVVFNALHG 68

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG VQ +LE ++IPYTHSG+ +SAL+MDK ++K V  + G+PV  S+LV++  + +
Sbjct: 69  RWGEDGCVQGLLEWMQIPYTHSGVYSSALAMDKEKTKDVYRAAGLPVAASMLVSKSEILN 128

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            H +  PYV+KP   GSS+G+ ++         + +       D L++E+++ G ELT  
Sbjct: 129 SHPMPAPYVVKPYNEGSSVGVYIVNSGDKPISTIKEELP----DTLMVEEFIPGYELTVT 184

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V+   +L VT I      +Y ++ KY +  S H +PA +P +I+      A  AH+ + C
Sbjct: 185 VLDGNALTVTNIIT--DGWYDFDAKYENGGSHHEIPANLPKEIFDACIDYAERAHECLNC 242

Query: 241 RGISRSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           RG+SR+DF +D       +  LE N QPGMTP S+ PE AAY G SF +++ WMVEDASC
Sbjct: 243 RGLSRTDFRWDENLGLSGLKLLETNTQPGMTPTSLAPEQAAYKGISFGQMVRWMVEDASC 302

Query: 299 LR 300
            R
Sbjct: 303 NR 304


>gi|56551730|ref|YP_162569.1| D-alanine--D-alanine ligase [Zymomonas mobilis subsp. mobilis ZM4]
 gi|241762278|ref|ZP_04760359.1| D-alanine/D-alanine ligase [Zymomonas mobilis subsp. mobilis ATCC
           10988]
 gi|260752695|ref|YP_003225588.1| D-alanine--D-alanine ligase [Zymomonas mobilis subsp. mobilis NCIMB
           11163]
 gi|81550526|sp|Q9RNM9|DDL_ZYMMO RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|5834367|gb|AAD53933.1|AF179611_17 D-alanine:D-alanine ligase [Zymomonas mobilis subsp. mobilis ZM4]
 gi|56543304|gb|AAV89458.1| D-alanine/D-alanine ligase [Zymomonas mobilis subsp. mobilis ZM4]
 gi|241373181|gb|EER62811.1| D-alanine/D-alanine ligase [Zymomonas mobilis subsp. mobilis ATCC
           10988]
 gi|258552058|gb|ACV75004.1| D-alanine/D-alanine ligase [Zymomonas mobilis subsp. mobilis NCIMB
           11163]
          Length = 321

 Score =  340 bits (873), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 129/302 (42%), Positives = 193/302 (63%), Gaps = 5/302 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VLMGG SSERE+SL SG+    ALE+AG++V+ +D+DR +   L   KPD+ FN LHG
Sbjct: 7   VVVLMGGWSSEREISLLSGRHVGKALEEAGYRVTLLDMDRDIAFKLREAKPDVVFNALHG 66

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +++L+ I YTHSG+ ASA+++DK  +K++++   +P+    LV R ++ +
Sbjct: 67  TPGEDGSIQGLMDLMAIRYTHSGLTASAIAIDKELTKKILTPENIPMPQGCLVERESLYT 126

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKK--DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           +  +  PYV+KP+  GSS+G+ +I +  +   P+   Q   W +   LL E ++ G ELT
Sbjct: 127 KDPLPRPYVLKPVNEGSSVGVAIIDESFNDGQPIRKDQIDPWKNFKTLLAEPFIKGRELT 186

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             VMGD +L VTE+  P + FY Y+ KY+   +TH+ PAKIP +I ++   L+  AHQ +
Sbjct: 187 VAVMGDKALAVTEL-CPNNGFYDYKAKYTDGMTTHICPAKIPAEIAEKAMALSLKAHQLL 245

Query: 239 GCRGISRSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           GCRG SRSDF +D  +    +F LE+N QPGMTP+S+ PE A   G  +  L   +VE+A
Sbjct: 246 GCRGPSRSDFRWDDEAGLDGLFLLEVNTQPGMTPLSLVPEQAKQLGIDYVALCRMIVEEA 305

Query: 297 SC 298
             
Sbjct: 306 LA 307


>gi|146305959|ref|YP_001186424.1| D-alanine--D-alanine ligase [Pseudomonas mendocina ymp]
 gi|190359205|sp|A4XQS6|DDL_PSEMY RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|145574160|gb|ABP83692.1| D-alanine--D-alanine ligase [Pseudomonas mendocina ymp]
          Length = 313

 Score =  340 bits (873), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 112/302 (37%), Positives = 169/302 (55%), Gaps = 6/302 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL SG A  SAL+ AG     IDV       LA  K D AF VLHG
Sbjct: 15  VAVLFGGKSAEREVSLKSGNAVLSALQAAGVDAFGIDVGDDFLQRLASEKIDRAFIVLHG 74

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTM 118
             GEDG +Q +LE   IPYT SGILASAL+MDK+R+KQV  S G+P     ++       
Sbjct: 75  RGGEDGSMQGLLECAGIPYTGSGILASALAMDKLRTKQVWHSLGLPTPRHAVLTSQADCE 134

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   +  P ++KP   GSS+G+  ++  +++      ++   +  Q+L+EQ++ G E T
Sbjct: 135 AAAAELGFPLIVKPAHEGSSIGMAKVESVEALIAAWQDAA--RYDSQVLVEQWIAGPEYT 192

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             V+    L    +  P S FY Y+ KY + ++ + +P  +  +   E++ L   A +A+
Sbjct: 193 VAVLRGEVLPPIGLGTPHS-FYDYDAKYLADDTQYRIPCGLSAEKEAELKELTARACEAV 251

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           G +G +R+D + D    + + LE+N  PGMT  S+ P  A  AG  F++L+L ++ D+  
Sbjct: 252 GTQGWARADVMQDAS-GQFWLLEVNTVPGMTDHSLVPMAARAAGLDFQQLVLAILADSVE 310

Query: 299 LR 300
            R
Sbjct: 311 AR 312


>gi|290476451|ref|YP_003469356.1| D-alanine-D-alanine ligase B, affects cell division [Xenorhabdus
           bovienii SS-2004]
 gi|289175789|emb|CBJ82592.1| D-alanine-D-alanine ligase B, affects cell division [Xenorhabdus
           bovienii SS-2004]
          Length = 306

 Score =  340 bits (873), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 105/305 (34%), Positives = 164/305 (53%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL SG++  + L++AG     +D        L       AF  LHG
Sbjct: 5   VAVLLGGTSAEREVSLQSGQSVVAGLKEAGINAYSVDTKDFDVTKLKGEGFSKAFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LE L+IPYT SG++ASALSMDK+R+KQ+     +PV P   +N    + 
Sbjct: 65  RGGEDGTLQGVLEFLQIPYTGSGVMASALSMDKLRTKQLWQGAKLPVSPYAAINAQKFEQ 124

Query: 121 QH---------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
            +          +  P ++KP   GSS+G+  +     +   L    ++ H   +L+E++
Sbjct: 125 VNDFQLQEYVRELGLPLMVKPNLEGSSVGMTKVNDYSELRGAL--ELAFQHDTDVLVEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T   +GD  L    I  P+  FY Y+ KY S  + +  P+ +  +   E+  +A
Sbjct: 183 LLGPEYTVAFLGDEVLPSIRIQAPEV-FYDYDAKYLSNETKYFCPSGLSAEKELELAEIA 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A++A+GC G  R D + D  +   + LE+N  PGMT  S+ P  A  +G SF +L++ 
Sbjct: 242 SKAYKALGCSGWGRVD-IMDDGNGNFYLLEVNTSPGMTSHSLVPMAARQSGLSFSQLVVK 300

Query: 292 MVEDA 296
           ++E A
Sbjct: 301 ILELA 305


>gi|78043171|ref|YP_360179.1| D-alanine--D-alanine ligase [Carboxydothermus hydrogenoformans
           Z-2901]
 gi|123576231|sp|Q3ACF5|DDL_CARHZ RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|77995286|gb|ABB14185.1| D-alanine--D-alanine ligase [Carboxydothermus hydrogenoformans
           Z-2901]
          Length = 312

 Score =  340 bits (873), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 111/304 (36%), Positives = 180/304 (59%), Gaps = 14/304 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+ GG+SSEREVSL +G A   AL   G+ V +ID+DR++   L     D AF  LHG
Sbjct: 3   IGVICGGLSSEREVSLRTGDAIFRALLKKGYNVVKIDMDRNIAETLKKENIDFAFIALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118
            +GEDG +Q +LE+++IPYT SGILAS+L++DK+ +K+++ + G+P    I  +      
Sbjct: 63  KYGEDGAIQGLLEIMDIPYTGSGILASSLAIDKIMTKKILKAEGIPTPNYIAFSFDENPN 122

Query: 119 ------DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                 +    +  P VIK  + GS++GI  +   Q +P  + +        QLL+E+++
Sbjct: 123 FEAISSEILQTLKLPVVIKAPREGSTIGIEFVFSKQELPKAIKKVL--EIDKQLLVEEFI 180

Query: 173 DGIELTCGVMGDA---SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           +G+E+T  V+G++    L + EI V K+ FY YE KY+   S H++P +I  ++ ++   
Sbjct: 181 EGVEVTASVLGNSNPVVLPLIEI-VSKTRFYDYEAKYTPGLSEHIIPPRIAPELSQKAIE 239

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
            A   ++A+GCRG +R DF+ D    + + LE+N  PGMT  S+FP+ A   G SF +L+
Sbjct: 240 YARKTYKALGCRGFARVDFMIDVRKNEAYVLEVNTIPGMTATSLFPDAAKAQGISFEDLV 299

Query: 290 LWMV 293
             ++
Sbjct: 300 EKIL 303


>gi|78221636|ref|YP_383383.1| D-alanine--D-alanine ligase [Geobacter metallireducens GS-15]
 gi|78192891|gb|ABB30658.1| D-alanine--D-alanine ligase / cell division protein FtsQ [Geobacter
           metallireducens GS-15]
          Length = 627

 Score =  340 bits (872), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 122/300 (40%), Positives = 184/300 (61%), Gaps = 7/300 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VLMGG+S+ERE+SLSSG A   AL   G+    IDVDR +  VL     D+AF  LHG
Sbjct: 11  IGVLMGGLSAEREISLSSGGAVHKALLARGYDAVAIDVDRDLPQVLVREWIDVAFICLHG 70

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--M 118
            +GEDG VQ +LEL+ IPYT SG+LASAL+M+K+ +KQ  ++ G+ + P  ++ R     
Sbjct: 71  RYGEDGAVQGVLELMGIPYTGSGVLASALAMNKIFAKQAFAAAGLTITPHRVLVRGETFD 130

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                I  P V+KP + GSS+G+ ++KK     L     +++ + +++L+E++V G E+ 
Sbjct: 131 AVAAGIDLPVVVKPSQEGSSVGVSIVKKA--EELAAALEAAFRYDNEILVEKFVKGREIQ 188

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
            G++ D ++   EI VPK +FY +E KY+   + H+ P  +P D+Y+++      AH+A+
Sbjct: 189 VGILDDRAMGAIEI-VPKKEFYDFEAKYTDGMAEHICPPVLPADLYRKLLAEGEKAHRAL 247

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA-AYAGYSFRELLLWMVEDAS 297
           GC G SR DFL        F LE+N  PGMT +S+ PE+A   AG +F EL+  ++  AS
Sbjct: 248 GCAGYSRVDFLVTE-GGDCFLLEVNTLPGMTALSLLPEIAQKEAGIAFEELVERILVSAS 306


>gi|161619376|ref|YP_001593263.1| D-alanine--D-alanine ligase [Brucella canis ATCC 23365]
 gi|260566067|ref|ZP_05836537.1| D-alanine-D-alanine ligase B [Brucella suis bv. 4 str. 40]
 gi|161336187|gb|ABX62492.1| D-alanine--D-alanine ligase [Brucella canis ATCC 23365]
 gi|260155585|gb|EEW90665.1| D-alanine-D-alanine ligase B [Brucella suis bv. 4 str. 40]
          Length = 308

 Score =  340 bits (872), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 175/303 (57%), Positives = 229/303 (75%), Gaps = 3/303 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSER VSLSSG ACA+ LE+ G++V++IDVDR+V  +L  LKPD+ FN LHG
Sbjct: 6   VAVLMGGFSSERSVSLSSGVACATTLEECGYRVTRIDVDRNVASILVELKPDVVFNALHG 65

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG +Q +LE L+IPYTHSG+LASAL+MDK R+K+V ++ GV V PS L+NRF + S
Sbjct: 66  PFGEDGAIQGVLEYLQIPYTHSGVLASALAMDKDRAKKVAAAAGVVVAPSRLMNRFDIGS 125

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           QH + PPYV+KP++ GSS G++++K+DQ  P  ++ S+ W +GD++++E Y+ G ELTC 
Sbjct: 126 QHPMKPPYVVKPVREGSSFGVVIVKEDQPHPPQVIGSADWKYGDEVMVEGYIAGRELTCA 185

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           VMGD ++DV EI      FY Y+ KY +  STHV PAKI  +IY+++Q +A  AH+AIGC
Sbjct: 186 VMGDRAMDVCEIIPVGYQFYDYDSKYVAGASTHVSPAKILPNIYQKIQTMALTAHRAIGC 245

Query: 241 RGISRSDFLFDP---LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           RG+SRSDF FD       +V WLEIN QPGMTP S+ P++A  AG SF ELL WMVEDAS
Sbjct: 246 RGVSRSDFRFDDRFSEEGEVVWLEINAQPGMTPTSLVPDIAKAAGISFAELLSWMVEDAS 305

Query: 298 CLR 300
           CLR
Sbjct: 306 CLR 308


>gi|330994420|ref|ZP_08318345.1| D-alanine--D-alanine ligase [Gluconacetobacter sp. SXCC-1]
 gi|329758420|gb|EGG74939.1| D-alanine--D-alanine ligase [Gluconacetobacter sp. SXCC-1]
          Length = 313

 Score =  340 bits (872), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 125/309 (40%), Positives = 185/309 (59%), Gaps = 12/309 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---PDLAFNV 57
           +AVLMGG+S+ER+VSL+SG+  A AL   G  V  ID    +  ++  L+   PD  FN 
Sbjct: 6   IAVLMGGLSAERDVSLNSGRNVAEALRGLGHDVRCIDAGADLLAIVRDLRDYGPDAVFNA 65

Query: 58  LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117
           LHG  GEDG +Q +L+ + I YTHSG+ ASA +M+K  ++ V ++ G+PV   +L+    
Sbjct: 66  LHGRLGEDGAIQGVLDWMGIAYTHSGVRASATAMNKDAARTVFAAAGLPVATGMLLTPAE 125

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
           ++    +  PYV+KP+  GSS+G+ ++    +    +  +  W+HG  +L+E+Y+ G EL
Sbjct: 126 LEPADPLPAPYVVKPVNEGSSVGVEIVHAGSNRRGAI--ARGWSHGPHVLVEEYIPGREL 183

Query: 178 TCGVMGDASLDVTEIAVPKSD--FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
           T GV+ D +L VT+I    S   FY YE KY++  S H LPA+I    +     LA  AH
Sbjct: 184 TVGVLDDRALTVTDITPAASGPSFYDYEAKYAAGGSRHELPARIHPAAFARACDLALAAH 243

Query: 236 QAIGCRGISRSDFLFDPLS-----RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +A+GCRG SR+DF +D  +      ++  LE N QPGMTP S+ PE AAY G  +  L  
Sbjct: 244 RALGCRGASRTDFRYDDTAGAEAPGRLVILETNTQPGMTPTSLLPEQAAYCGMDYATLCQ 303

Query: 291 WMVEDASCL 299
           WM++ A+C 
Sbjct: 304 WMIDHATCR 312


>gi|291616274|ref|YP_003519016.1| DdlB [Pantoea ananatis LMG 20103]
 gi|291151304|gb|ADD75888.1| DdlB [Pantoea ananatis LMG 20103]
          Length = 305

 Score =  339 bits (871), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 110/305 (36%), Positives = 165/305 (54%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG S+ER+VSL SG A  + L +AG     ID      L L     +  F  LHG
Sbjct: 4   VAVLMGGTSAERDVSLMSGGAVLAGLREAGIDAQGIDTRDVSVLELTAQGFEKVFIALHG 63

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF---- 116
             GEDG +QA+LE L++PYT SG++ASA++MDK+R+K +    G+P    + + R     
Sbjct: 64  RGGEDGTLQAVLEFLQLPYTGSGVMASAVTMDKLRTKLLWQGRGLPAGKFVWITREQMQS 123

Query: 117 -----TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                T  +   +  P  +KP   GSS+GI  + +   +   L    ++ H D +L+E +
Sbjct: 124 GLDAATEAAISALGLPLFVKPSSEGSSVGISRVNQLSDLSAAL--EEAFRHDDNVLVEAF 181

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T G++GD  L   +I    S+FY YE KY S ++ +  PA +  +   E+Q+L 
Sbjct: 182 LSGEEYTVGILGDQILPAIKIKTA-SEFYDYEAKYISDDTQYFCPAGLSAEREAELQQLV 240

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           + A +A+GC G  R D + D        LE N  PGMT  S+ P  A  AG +F +L++ 
Sbjct: 241 WSAWRALGCSGWGRVDVMTDDQ-GHFQLLEANTSPGMTSHSLVPMAAKQAGLTFSQLVVR 299

Query: 292 MVEDA 296
           ++E A
Sbjct: 300 ILELA 304


>gi|225850175|ref|YP_002730409.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB)
           (D-Ala-D-Ala ligase B) [Persephonella marina EX-H1]
 gi|225644851|gb|ACO03037.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB)
           (D-Ala-D-Ala ligase B) [Persephonella marina EX-H1]
          Length = 303

 Score =  339 bits (871), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 104/298 (34%), Positives = 168/298 (56%), Gaps = 7/298 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--DRSVGLVLAHLKPDLAFNVL 58
           +A+L GG SSERE+S+ SGKA  +AL+  GF+ S  D    +     +    PDLAF  L
Sbjct: 6   IALLYGGSSSEREISIKSGKAVENALKKLGFQYSVFDPAEGKDFIKKITDYNPDLAFIAL 65

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
           HG  GEDG +Q +LE L I YT S +  SA+ MDK  +K ++ + G+ V     +     
Sbjct: 66  HGKIGEDGTIQGVLEFLGIKYTGSDLKTSAICMDKSLTKDILKAEGITVPEGYTIQNLDQ 125

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   +  P V+KP   GSS+G+ +++ +  +   +          +++IE+++ G E+T
Sbjct: 126 INDLRLGYPVVVKPNSEGSSIGVKIVENEDQLGKAV--GEILKIDSKVIIERFIKGREIT 183

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
            G++    LD+ EI V K  FY Y  KY S  + ++ PA+I   +Y+++Q  A   +  +
Sbjct: 184 VGILNGEPLDIIEIKV-KEGFYDYYNKYISQETEYICPAEIESSLYRKIQNTALKIYNIL 242

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           GC+G++R DF+ D    K ++LE+N  PG+T  S+ P+ AA  G +F  L+L ++E A
Sbjct: 243 GCKGVARVDFILDK--DKPYFLEVNTIPGLTDHSLIPKAAAVKGINFESLILKIIEGA 298


>gi|148549590|ref|YP_001269692.1| D-alanine--D-alanine ligase [Pseudomonas putida F1]
 gi|148513648|gb|ABQ80508.1| D-alanine--D-alanine ligase [Pseudomonas putida F1]
          Length = 318

 Score =  339 bits (871), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 111/302 (36%), Positives = 162/302 (53%), Gaps = 6/302 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL SG A   AL  AG  V  IDV   +   L   K D AF +LHG
Sbjct: 20  VAVLYGGKSAEREVSLKSGAAVIDALSTAGVDVVGIDVGDDLLARLQSEKIDRAFIILHG 79

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTM 118
             GEDG +Q +LE L IPYT SGILASAL+MDK+R+KQV  S G+P     ++      +
Sbjct: 80  RGGEDGSMQGLLECLGIPYTGSGILASALAMDKLRTKQVWQSLGIPTPRHAVLASESDCL 139

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   +  P ++KP   GSS+G+  +   Q +      ++   +  Q+L+EQ++ G E T
Sbjct: 140 QASTELGFPLIVKPAHEGSSIGMAKVNSAQELVAAWQDAA--KYDSQVLVEQWIHGPEFT 197

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             V+    L    +  P   FY Y+ KY + ++ + +P  +     +E+  L   A  AI
Sbjct: 198 IAVLRGQVLPPIALGTPHV-FYDYDAKYIANDTQYRIPCGLDSVKEQELIDLTARACDAI 256

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           G  G  R D + D    + + LE+N  PGMT  S+ P  A  AG  F++L+L ++ ++  
Sbjct: 257 GIEGWGRLDVMQDEQ-GQFWLLEVNTAPGMTDHSLVPMAARAAGLDFQQLVLAILAESVA 315

Query: 299 LR 300
            R
Sbjct: 316 TR 317


>gi|240850889|ref|YP_002972289.1| D-alanine--D-alanine ligase [Bartonella grahamii as4aup]
 gi|240268012|gb|ACS51600.1| D-alanine--D-alanine ligase [Bartonella grahamii as4aup]
          Length = 306

 Score =  339 bits (871), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 157/301 (52%), Positives = 222/301 (73%), Gaps = 1/301 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSER VSLSSG ACA  LE  G++VS++DVD  +  VL  L+PD+AFN LHG
Sbjct: 6   IAVLMGGFSSERSVSLSSGAACADVLEVQGYRVSRVDVDAHIASVLEQLQPDIAFNALHG 65

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG +Q ILE L+IPYTHSG++ASAL+MDK R+K +V++ GV V PS +++RF +  
Sbjct: 66  PFGEDGRIQGILEYLKIPYTHSGVMASALAMDKGRAKIIVANVGVCVAPSRIMSRFALGQ 125

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            H + PPYVIKP+  GSS G+++++++++ P   +  + W + D+++IE+Y+ G ELTC 
Sbjct: 126 THPMEPPYVIKPVCEGSSFGVVIVQENEAAPPHSIGGAEWGYADEVMIEKYIPGRELTCA 185

Query: 181 VMGDASLDVTEIAVPKSD-FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
           V+G+  LDV EI   K   FY Y+ KY +  S H+ PA++ L+IY+ VQR++  AHQAIG
Sbjct: 186 VLGNEVLDVCEILPDKHFPFYDYDSKYKTGGSLHICPAQLSLNIYQSVQRMSLAAHQAIG 245

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
           CRG+SRSDF FD  + ++ WLEIN QPGMT  S+ P++A  +G ++ +++ WMVEDASC+
Sbjct: 246 CRGVSRSDFRFDEKTGELVWLEINTQPGMTSTSLLPDIAKASGRTYGDIVQWMVEDASCM 305

Query: 300 R 300
           R
Sbjct: 306 R 306


>gi|146296394|ref|YP_001180165.1| D-alanine--D-alanine ligase [Caldicellulosiruptor saccharolyticus
           DSM 8903]
 gi|166198476|sp|A4XJ89|DDL_CALS8 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|145409970|gb|ABP66974.1| D-alanine--D-alanine ligase [Caldicellulosiruptor saccharolyticus
           DSM 8903]
          Length = 364

 Score =  339 bits (871), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 102/345 (29%), Positives = 173/345 (50%), Gaps = 51/345 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +AVL GG+S+E EVS+ S K+    L+   +++  I + +    +L   K          
Sbjct: 6   VAVLFGGVSTEHEVSIVSAKSVMQNLDKEKYEIIPIGITKEGKWLLYTGKIEDLDSKWTM 65

Query: 52  -----------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
                                        D+ F VLHG  GEDG VQ +LEL  IPY   
Sbjct: 66  YSIECFISPDRTKKALVKIKDSEATFIDIDVVFPVLHGLNGEDGTVQGLLELSGIPYVGC 125

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPL 133
           G+L+SAL MDK  +K++    G+P    +++ +    S         +   S P  +KP 
Sbjct: 126 GVLSSALCMDKAFAKKLALLEGIPQGHFLVIYKDEYLSKKEYFIRRIESEFSYPVFVKPA 185

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
             GSS+GI   K    + L + +  ++ +  ++LIEQ ++  E+ C V+G++ + V+ + 
Sbjct: 186 NSGSSVGISKAKDKDELILAIHE--AFLYDTKILIEQAINAREIECAVLGNSEILVSALG 243

Query: 194 --VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
             VP  +FYSYE KY   +S  ++PAK+   +  E++ LA   ++   C G++R DF  D
Sbjct: 244 EIVPSREFYSYEAKYIDGSSELIIPAKLEKQVEDEIKELAVKIYKLFECSGMARIDFFVD 303

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             + KV++ E+N  PG T +S++P++  Y+G  + +LL  +++ A
Sbjct: 304 KETNKVYFNEVNTIPGFTSISMYPKLMEYSGIPYPQLLDKLIQLA 348


>gi|332187083|ref|ZP_08388823.1| D-alanine--D-alanine ligase family protein [Sphingomonas sp. S17]
 gi|332012783|gb|EGI54848.1| D-alanine--D-alanine ligase family protein [Sphingomonas sp. S17]
          Length = 314

 Score =  339 bits (870), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 124/300 (41%), Positives = 187/300 (62%), Gaps = 5/300 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG S+ER VSL SG   A ALE AG +V++ID+ R V   L   +PDL FN LHG
Sbjct: 7   IAVLMGGWSAERPVSLMSGAGVADALERAGHRVTRIDMGRDVAARLVEAQPDLVFNALHG 66

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
           + GEDG VQ +L+L+ I YTHSG+  S +++DK+ +KQ +   G+P+    +V    + +
Sbjct: 67  SPGEDGTVQGMLDLMGIAYTHSGLATSVIAIDKVLTKQALVPHGIPMPGGRIVKSEELFA 126

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSI--PLDLLQSSSWNHGDQLLIEQYVDGIELT 178
              +  PYV+KP+  GSS+G+ ++    +   P+    +  W   ++LL E Y+ G ELT
Sbjct: 127 GDPLPRPYVLKPVNEGSSVGVAIVTDTSNHGNPIARDVAGPWAEFEELLAEPYIRGRELT 186

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             V+G+ +L VTE+  PK+ +Y ++ KY+   + HV PA+IP +I +  + LA  AH+ +
Sbjct: 187 TAVLGNRALGVTELK-PKNGWYDFDAKYTDGLTEHVCPAQIPDEIAEACKSLALEAHRIL 245

Query: 239 GCRGISRSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           GCRG SRSDF +D       +F LE+N QPGMTP+S+ PE   + G  +  L+  +V++A
Sbjct: 246 GCRGASRSDFRWDDERGVDGLFLLEVNTQPGMTPLSLVPEQGRHVGMDYDTLVQAIVDEA 305


>gi|313500435|gb|ADR61801.1| Ddl [Pseudomonas putida BIRD-1]
          Length = 318

 Score =  339 bits (869), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 112/302 (37%), Positives = 162/302 (53%), Gaps = 6/302 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL SG A   AL  AG  V  IDV   +   L   K D AF +LHG
Sbjct: 20  VAVLYGGKSAEREVSLKSGAAVIDALSTAGVDVVAIDVGDDLLARLQSEKIDRAFIILHG 79

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTM 118
             GEDG +Q +LE L IPYT SGILASAL+MDK+R+KQV  S G+P     ++      +
Sbjct: 80  RGGEDGSMQGLLECLGIPYTGSGILASALAMDKLRTKQVWQSLGIPTPRHAVLASESDCL 139

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   +  P ++KP   GSS+G+  +   Q +      ++   +  Q+L+EQ++ G E T
Sbjct: 140 QASTELGFPLIVKPAHEGSSIGMAKVNSAQELVAAWQDAA--KYDSQVLVEQWIHGPEFT 197

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             V+    L    +  P   FY Y+ KY + ++ + +P  +     +E+  L   A  AI
Sbjct: 198 IAVLRGQVLPPIALGTPHV-FYDYDAKYIANDTQYRIPCGLDSVKEQELIDLTARACDAI 256

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           G  G  R D + D   R  + LE+N  PGMT  S+ P  A  AG  F++L+L ++ ++  
Sbjct: 257 GIEGWGRLDVMQDEQGR-FWLLEVNTAPGMTDHSLVPMAARAAGLDFQQLVLAILAESVA 315

Query: 299 LR 300
            R
Sbjct: 316 TR 317


>gi|159044960|ref|YP_001533754.1| D-alanine--D-alanine ligase [Dinoroseobacter shibae DFL 12]
 gi|189083041|sp|A8LS60|DDL_DINSH RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|157912720|gb|ABV94153.1| D-alanine--D-alanine ligase [Dinoroseobacter shibae DFL 12]
          Length = 308

 Score =  339 bits (869), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 140/302 (46%), Positives = 189/302 (62%), Gaps = 8/302 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +A++MGG SSER VSLSSG+ C +AL   GF+V  +D    +   L  L+PD+ FN LHG
Sbjct: 13  VAMMMGGTSSERAVSLSSGRECGAALRAEGFEVIDLDAGPDLAARLEDLRPDVVFNALHG 72

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG VQ +LE L IPYTHSG+LASAL+MDK R+K   ++ G+P+  S L  R  + +
Sbjct: 73  RWGEDGCVQGLLEWLRIPYTHSGVLASALAMDKERTKAAYAAAGLPIATSGLFTRAQIAA 132

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +H++ PPYVIKP   GSS+G+ ++ +      +L      +  D L++E +V G ELT  
Sbjct: 133 RHVMPPPYVIKPYNEGSSVGVYLVPEGAEAAPELAD----DLPDTLMVEAFVPGRELTVT 188

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V GD +L VT+I      +Y Y+ KY    S HVLPA++P D+Y      A  AH+ +GC
Sbjct: 189 VQGDRALCVTDIVT--EGWYDYDAKYVPGGSRHVLPAEVPGDVYDACMAHAETAHRVLGC 246

Query: 241 RGISRSDFLFDPLS--RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           RGISR+DF +DP      +  LE N QPGMTP S+ PE A + G  F  L  W+VEDASC
Sbjct: 247 RGISRTDFRWDPRRSLDGLALLETNTQPGMTPTSLTPEQAQHVGLGFGALCRWIVEDASC 306

Query: 299 LR 300
            R
Sbjct: 307 DR 308


>gi|253988596|ref|YP_003039952.1| D-alanine--D-alanine ligase [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253780046|emb|CAQ83207.1| D-alanine--D-alanine ligase [Photorhabdus asymbiotica]
          Length = 306

 Score =  339 bits (869), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 104/305 (34%), Positives = 167/305 (54%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL SG A  + L++AG     ID    +   L     +  F  LHG
Sbjct: 5   VAVLLGGTSAEREVSLLSGHAVLAGLKEAGIDAHPIDTKDFLVTQLKEAGFEKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LE L++PYT SG++AS+LSMDK+R+KQ+    G+ V P + +N    + 
Sbjct: 65  RGGEDGTLQGVLEFLQLPYTGSGVMASSLSMDKLRTKQLWQGIGLTVSPYVAINLQQFEQ 124

Query: 121 Q---------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P ++KP   GSS+G+  + +   +   L    ++ +   LLIE++
Sbjct: 125 FTDLQLQEHVADLGLPLIVKPSLEGSSVGMTKVNEISELRGALEI--AFRYDADLLIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++GD +L    I  P + FY Y+ KY S  + +  P+ +  +  +++  LA
Sbjct: 183 LYGPEYTVAILGDTALPSIRIQ-PAAIFYDYDAKYWSEETKYFCPSGLSDEKEQQLAELA 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A++++GC G  R D + D      + LE+N  PGMT  S+ P  A  AG +F +L++ 
Sbjct: 242 LKAYKSVGCCGWGRVDIMMD-SDGVFYLLEVNTSPGMTSHSLVPMAARQAGLNFSQLVVK 300

Query: 292 MVEDA 296
           ++E A
Sbjct: 301 ILELA 305


>gi|319778482|ref|YP_004129395.1| D-alanine--D-alanine ligase [Taylorella equigenitalis MCE9]
 gi|317108506|gb|ADU91252.1| D-alanine--D-alanine ligase [Taylorella equigenitalis MCE9]
          Length = 312

 Score =  339 bits (869), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 99/306 (32%), Positives = 173/306 (56%), Gaps = 13/306 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL SG+   +AL+  G+ +   D+     L L +   DLAF  LHG
Sbjct: 7   IAVLYGGNSAEREVSLMSGQGVGNALKSRGYNIELFDIANRDLLELKN--FDLAFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--M 118
            +GEDG +Q  LELL+IPYT  G+++S++ M+K+ SK++    G+P     +V  +    
Sbjct: 65  KYGEDGCIQGFLELLKIPYTGPGVMSSSVGMNKIVSKKIFIHEGIPTPEFRVVRDYEGLE 124

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   I  P ++KP + GS++G+  +     +     +S  +   +++L+E+ ++G ELT
Sbjct: 125 KATQEIGYPIIVKPPQEGSTIGLKKVHSQDELTEAFNESIKF--DEEMLVEKCIEGRELT 182

Query: 179 CGVMG----DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
             ++G      +L + EI  P  + Y YE KY+  ++ ++ PAK+  ++ + ++ +   A
Sbjct: 183 VAIIGKSPDTRALPIIEIVTPDGN-YDYEQKYTRDDTQYICPAKLDENLARNIENICIKA 241

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           + ++ C+G SR D + D  +   + LEIN  PGMT  S+ P  A   G S+ ++   +++
Sbjct: 242 YDSLECQGWSRVDVMLDK-NNCPWVLEINTSPGMTSHSLVPMAAKAIGLSYEDICEEILK 300

Query: 295 DASCLR 300
            A CL+
Sbjct: 301 TA-CLK 305


>gi|26988073|ref|NP_743498.1| D-alanine--D-alanine ligase [Pseudomonas putida KT2440]
 gi|39931112|sp|Q88N74|DDLB_PSEPK RecName: Full=D-alanine--D-alanine ligase B; AltName:
           Full=D-Ala-D-Ala ligase B; AltName: Full=D-alanylalanine
           synthetase B
 gi|24982797|gb|AAN66962.1|AE016324_12 D-alanine--D-alanine ligase B [Pseudomonas putida KT2440]
          Length = 318

 Score =  339 bits (869), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 112/302 (37%), Positives = 161/302 (53%), Gaps = 6/302 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL SG A   AL  AG  V  IDV   +   L   K D AF +LHG
Sbjct: 20  VAVLYGGKSAEREVSLKSGAAVIDALSTAGVDVVAIDVGDDLLARLQSEKIDRAFIILHG 79

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTM 118
             GEDG +Q +LE L IPYT SGILASAL+MDK+R+KQV  S G+P     ++      +
Sbjct: 80  RGGEDGSMQGLLECLGIPYTGSGILASALAMDKLRTKQVWQSLGIPTPRHAVLASESDCL 139

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   +  P ++KP   GSS+G+  +   Q +      ++   +  Q+L+EQ++ G E T
Sbjct: 140 QASTELGFPLIVKPAHEGSSIGMAKVNSTQELVAAWQDAA--KYDSQVLVEQWIHGPEFT 197

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             V+    L    +  P   FY Y+ KY   ++ + +P  +     +E+  L   A  AI
Sbjct: 198 IAVLRGQVLPPIALGTPHV-FYDYDAKYIVNDTQYRIPCGLDSVKEQELIDLTARACDAI 256

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           G  G  R D + D   R  + LE+N  PGMT  S+ P  A  AG  F++L+L ++ ++  
Sbjct: 257 GIEGWGRLDVMQDEQGR-FWLLEVNTAPGMTDHSLVPMAARAAGLDFQQLVLAILAESVA 315

Query: 299 LR 300
            R
Sbjct: 316 TR 317


>gi|170720132|ref|YP_001747820.1| D-alanine--D-alanine ligase [Pseudomonas putida W619]
 gi|169758135|gb|ACA71451.1| D-alanine--D-alanine ligase [Pseudomonas putida W619]
          Length = 318

 Score =  339 bits (869), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 112/302 (37%), Positives = 163/302 (53%), Gaps = 6/302 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL SG A   AL  AG  V  IDV   +   L   K D AF +LHG
Sbjct: 20  VAVLYGGKSAEREVSLKSGAAVIEALSSAGVDVVAIDVGDDLLARLQSEKIDRAFIILHG 79

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTM 118
             GEDG +Q +LE L IPYT SGILASAL+MDK+R+KQV  S G+P     ++      +
Sbjct: 80  RGGEDGSMQGLLECLGIPYTGSGILASALAMDKLRTKQVWQSLGIPTPRHAVLASEEDCV 139

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   +  P ++KP   GSS+G+  +  ++ +      ++   +  Q+L+EQ++ G E T
Sbjct: 140 VAGTELGFPLIVKPAHEGSSIGMAKVNSERELVAAWQDAA--KYDSQVLVEQWIHGPEFT 197

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             V+    L    +  P   FY Y+ KY + ++ + +P  +     +E+  L   A  AI
Sbjct: 198 IAVLRGQVLPPIALGTPHV-FYDYDAKYIANDTQYRIPCGLDSAKEQELIDLTARACDAI 256

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           G  G  R D + D   R  + LE+N  PGMT  S+ P  A  AG  F++L+L ++ D+  
Sbjct: 257 GIEGWGRLDVMQDEQGR-FWLLEVNTAPGMTDHSLVPMAARAAGLDFQQLVLAILADSVA 315

Query: 299 LR 300
            R
Sbjct: 316 TR 317


>gi|297617349|ref|YP_003702508.1| D-alanine/D-alanine ligase [Syntrophothermus lipocalidus DSM 12680]
 gi|297145186|gb|ADI01943.1| D-alanine/D-alanine ligase [Syntrophothermus lipocalidus DSM 12680]
          Length = 314

 Score =  339 bits (869), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 116/307 (37%), Positives = 180/307 (58%), Gaps = 17/307 (5%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62
           VL GG S EREVSL SG+A A AL   GF+VS +D++ +    +   +PD+AF  LHG +
Sbjct: 7   VLYGGKSKEREVSLRSGRAVADALSQKGFEVSVLDLNENSVASIVADRPDVAFIALHGKY 66

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN-------- 114
           GEDG VQ +L++LEIPY  S +L SA+ ++K  +K++++   +P  P +++N        
Sbjct: 67  GEDGTVQGLLDILEIPYVGSDVLTSAVCINKATTKKILAYEQLPTAPFVILNTERGPKIG 126

Query: 115 --RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                      +  P V+KP   GSS+G  ++KK++++   L   ++  +  +L++E+++
Sbjct: 127 LAEMADKVVKELGLPAVVKPATQGSSIGTTIVKKEEALIPAL--ETALGYDGELVVERFI 184

Query: 173 DGIELTCGVMGD---ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           DG E+T  V+G+     L + EI V +++FY YE KY+   S H++PA+I       V+ 
Sbjct: 185 DGTEVTASVLGNEDAEVLPLIEI-VAENEFYDYEAKYTPGMSHHIIPARISERARVRVEE 243

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           +A   + A  CRG SR DF+ D      F LEIN  PGMT +S+FP+ A  AG SF +L 
Sbjct: 244 IALKTYHAFKCRGFSRVDFIVDKNDN-PFVLEINTIPGMTSLSLFPDAARAAGMSFEDLC 302

Query: 290 LWMVEDA 296
             +VE A
Sbjct: 303 ARLVELA 309


>gi|167035501|ref|YP_001670732.1| D-alanine--D-alanine ligase [Pseudomonas putida GB-1]
 gi|189083045|sp|B0KFS4|DDL_PSEPG RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|166861989|gb|ABZ00397.1| D-alanine--D-alanine ligase [Pseudomonas putida GB-1]
          Length = 318

 Score =  339 bits (869), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 111/302 (36%), Positives = 162/302 (53%), Gaps = 6/302 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL SG A   AL  AG  V  IDV   +   L   + D AF +LHG
Sbjct: 20  VAVLYGGKSAEREVSLKSGAAVIDALTTAGVDVVAIDVGDDLLARLQSEEIDRAFIILHG 79

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTM 118
             GEDG +Q +LE L IPYT SGILASAL+MDK+R+KQV  S G+P     ++      +
Sbjct: 80  RGGEDGSMQGLLECLGIPYTGSGILASALAMDKLRTKQVWQSLGIPTPRHAVLASESDCL 139

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   +  P ++KP   GSS+G+  +   Q +      ++   +  Q+L+EQ++ G E T
Sbjct: 140 QASTELGFPLIVKPAHEGSSIGMAKVNSAQELVAAWQDAA--KYDSQVLVEQWIHGPEFT 197

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             V+    L    +  P   FY Y+ KY + ++ + +P  +     +E+  L   A  AI
Sbjct: 198 IAVLRGQVLPPIALGTPHV-FYDYDAKYIANDTQYRIPCGLDSAKEQELIDLTARACDAI 256

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           G  G  R D + D   R  + LE+N  PGMT  S+ P  A  AG  F++L+L ++ ++  
Sbjct: 257 GIEGWGRLDVMQDEQGR-FWLLEVNTAPGMTDHSLVPMAARAAGLDFQQLVLAILAESVA 315

Query: 299 LR 300
            R
Sbjct: 316 TR 317


>gi|226941966|ref|YP_002797040.1| D-alanine--D-alanine ligase [Laribacter hongkongensis HLHK9]
 gi|259645169|sp|C1D5L4|DDL_LARHH RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|226716893|gb|ACO76031.1| DdlB [Laribacter hongkongensis HLHK9]
          Length = 308

 Score =  339 bits (869), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 103/298 (34%), Positives = 151/298 (50%), Gaps = 6/298 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AV+MGG S ERE+SL SG+   +AL   G      D        L     D  F  LHG
Sbjct: 12  VAVMMGGNSCEREISLMSGQGVLNALRGQGVDAHAFDPAEKPLAALQSEGFDRVFIALHG 71

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTM 118
            FGEDG +Q  LE + IPYT  G++ASA+ MDK RSK V  + G+PV    L+  +    
Sbjct: 72  AFGEDGTLQGALETMGIPYTGCGVMASAIGMDKWRSKLVWKAAGLPVPDFRLLADDSDFA 131

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
             +  +  P  +KP   GSSLG+  ++K   +     ++  +     +L EQ+V G E T
Sbjct: 132 AIEAELGLPMFVKPACEGSSLGVTKVRKAGELAQAYAEARKF--DPLVLAEQFVGGGEYT 189

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             ++   +L   +I  P ++FY Y+ KY   ++ +  PA +  +    ++RLA      +
Sbjct: 190 VALLEGRALPAIKIE-PATEFYDYDAKYFRDDTVYRCPAGMDDEHELAMRRLAEQGFAVL 248

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           G  G  R DFL D    + + LEIN  PGMT  S+ P  A  AG ++  L L ++E A
Sbjct: 249 GGSGWGRIDFLVDEA-GQPYLLEINTAPGMTTHSLVPMAAREAGLTYEALCLKVLEAA 305


>gi|206890747|ref|YP_002249129.1| D-alanine--D-alanine ligase B [Thermodesulfovibrio yellowstonii DSM
           11347]
 gi|226696392|sp|B5YFT1|DDL_THEYD RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|206742685|gb|ACI21742.1| D-alanine--D-alanine ligase B [Thermodesulfovibrio yellowstonii DSM
           11347]
          Length = 304

 Score =  339 bits (869), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 116/298 (38%), Positives = 188/298 (63%), Gaps = 8/298 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+ GGISSEREVSL SG+A  +AL++ G+ V  ID    +   +   K D+AF VLHG
Sbjct: 3   VGVIAGGISSEREVSLRSGQAVFNALKELGYDVVFIDAGIDLCEKIKIEKIDIAFLVLHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117
            +GE+G VQ +LE++ IPYT SG+LASAL+MDK  SK++    G+PV P  ++N+     
Sbjct: 63  GWGENGAVQGMLEVMGIPYTGSGVLASALAMDKEASKKIFLYHGIPVPPFKVLNKKDYIS 122

Query: 118 -MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
              S    S P V+KP + GSS+G+ ++K ++     +  + ++  G +++IE++++G E
Sbjct: 123 SAVSLSSFSFPCVVKPAEEGSSIGVNIVKNEREFKNAI--NEAFQFGKRVIIEKFIEGRE 180

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +  GV+GD +L   E+  PK  FYSYE KY+   + ++LP +I   +Y++++ L   AH+
Sbjct: 181 IHIGVLGDKALGGVEVR-PKKGFYSYEAKYTKGLTEYILPPEIDNALYEKLKELGLKAHK 239

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           ++ C+G +R D + D      + LE+N  PGMT  S+ P++A+ AGY F+ L+  ++E
Sbjct: 240 SLNCKGGTRVDMIVDQQGN-PYVLEVNTIPGMTETSLLPKIASLAGYDFKGLVKEILE 296


>gi|293392857|ref|ZP_06637175.1| D-alanine-D-alanine ligase B [Serratia odorifera DSM 4582]
 gi|291424716|gb|EFE97927.1| D-alanine-D-alanine ligase B [Serratia odorifera DSM 4582]
          Length = 306

 Score =  338 bits (868), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 104/305 (34%), Positives = 160/305 (52%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG S+EREVSL SG A  + L +AG     ID        L        F  LHG
Sbjct: 5   VAVLMGGTSAEREVSLQSGAAVLAGLREAGIDAHGIDTRDFPLAQLKAQGFSKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LE L++PYT SG++ASAL+MDK R+K V  S G+P+ P + ++R     
Sbjct: 65  RGGEDGTLQGMLEFLDLPYTGSGVMASALTMDKWRTKMVWQSMGLPIAPYVALHRAEFVG 124

Query: 121 Q---------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
           +           +  P ++KP + GSS+G+  + +   +   L +  ++ H D +L+E++
Sbjct: 125 EAKSQLLASVEALGLPLIVKPSREGSSVGMSKVSEFGELVAALDE--AFRHDDDVLVEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T   +GD  +    I  P   FY Y+ KY S ++ +  P+ +  +   E+  LA
Sbjct: 183 LSGPEYTVAFLGDQLMPSIRIQ-PAGVFYDYQAKYISDDTQYFCPSGLSAEQESELAALA 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A++ + C G  R D + D      + LE+N  PGMT  S+ P  A   G  F +L+  
Sbjct: 242 ARAYRGLDCSGWGRVDVMQDN-DGSFYLLEVNTSPGMTSHSLVPMAARQFGLDFSQLVAR 300

Query: 292 MVEDA 296
           ++E A
Sbjct: 301 ILELA 305


>gi|238898843|ref|YP_002924525.1| D-alanine-D-alanine ligase B, affects cell division [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
 gi|259645168|sp|C4K734|DDL_HAMD5 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|229466603|gb|ACQ68377.1| D-alanine-D-alanine ligase B, affects cell division [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
          Length = 320

 Score =  338 bits (868), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 111/319 (34%), Positives = 169/319 (52%), Gaps = 27/319 (8%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG SSER++SL SG A  + L +AG     ID    +   L       AF  LHG
Sbjct: 5   VAVLLGGTSSERQISLQSGHAVVAGLREAGIDARPIDTKNFLVTELKEKGFTKAFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +QA+LE L+IPYT SG++ASAL+MDK RSK +    G+PV P + +NR  +  
Sbjct: 65  RDGEDGHLQAVLEFLKIPYTGSGVMASALAMDKHRSKMIFQGAGLPVSPYVALNREQIWP 124

Query: 121 Q-----------------------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
                                   + +  P ++KP + GSS G+  ++    +  D    
Sbjct: 125 NVTQNTSNDLLLNNRISNKLIKNINQLGLPLIVKPSREGSSFGMTKVEHLDQL--DDALK 182

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
            +W++ +++L+E++  G ELT  ++GD  L    I V    FY Y+ KY S  + +  P+
Sbjct: 183 KAWHYDEEILVEKWHFGTELTVAILGDTVLPSIRIQVSD-IFYDYQAKYVSDKTQYFCPS 241

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
            +  +  K++  L+  A++A+GC G  R D + D      + +EIN  PGMT  S+FP  
Sbjct: 242 GLKQEQEKQLATLSMNAYRALGCDGWGRVDVMLD-DEGHFYLMEINTAPGMTDHSLFPMA 300

Query: 278 AAYAGYSFRELLLWMVEDA 296
           A  AG+SF EL+  ++  A
Sbjct: 301 ARQAGFSFSELVCKILSLA 319


>gi|167647622|ref|YP_001685285.1| D-alanine--D-alanine ligase [Caulobacter sp. K31]
 gi|190359125|sp|B0T824|DDL_CAUSK RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|167350052|gb|ABZ72787.1| D-alanine--D-alanine ligase [Caulobacter sp. K31]
          Length = 322

 Score =  338 bits (868), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 143/304 (47%), Positives = 199/304 (65%), Gaps = 5/304 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL +G A A+ALE  G +VS++D  + V  VL  L PDL FN LHG
Sbjct: 14  IAVLLGGPSAEREVSLVTGAAYAAALERLGARVSRVDPGKDVAQVLTALAPDLVFNGLHG 73

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG VQ +LE L + YTHSG+LASAL+MDK +SK V+++ G+PV    L +R  +  
Sbjct: 74  RWGEDGCVQGVLETLGLAYTHSGVLASALAMDKAKSKAVLAAAGIPVPGGGLFDRHDVAQ 133

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            H++ PPYV+KP   GSS+G+ ++ +  + P   L +  W  G+Q+++E Y+ G+EL   
Sbjct: 134 GHVMPPPYVVKPNAEGSSVGVSLVFEGANGPPRQLAAPDWAFGEQVMVEPYIPGLELAVA 193

Query: 181 VMGD----ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           V+G+     +L VTEI    + FY Y+ KYS   S HVLPA IP  +      LA L H 
Sbjct: 194 VVGESNGPRALAVTEIR-SSTGFYDYDAKYSQGGSIHVLPAPIPDAVRDRALHLAKLGHT 252

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           A+GC+G++RSDF +D ++  +  LE+N QPGMTP S+ PE A +AG SF  L+ W+VEDA
Sbjct: 253 ALGCQGVTRSDFRYDDINDLLVLLEVNTQPGMTPTSLVPEQADHAGVSFDRLVFWIVEDA 312

Query: 297 SCLR 300
              R
Sbjct: 313 YARR 316


>gi|116621914|ref|YP_824070.1| D-alanine--D-alanine ligase [Candidatus Solibacter usitatus
           Ellin6076]
 gi|122939638|sp|Q023Q5|DDL_SOLUE RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|116225076|gb|ABJ83785.1| D-alanine--D-alanine ligase [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 325

 Score =  338 bits (868), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 98/309 (31%), Positives = 170/309 (55%), Gaps = 15/309 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS--------VGLVLAHLKPD 52
           +AV+ GG + E EVS+ S K+  + L+   ++  +  +D++        +    AH   D
Sbjct: 5   VAVIYGGRTGEHEVSVRSAKSILAGLDCEKYETIEYFIDQNGKWSPGPILPEPGAHANID 64

Query: 53  LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
           + F VLHG FGEDG VQ +LEL ++PY  +G+L SA+SMDK   K+V     +P+   + 
Sbjct: 65  VVFPVLHGTFGEDGTVQGLLELADLPYVGAGVLGSAVSMDKEMMKRVCKERMLPIVDYVT 124

Query: 113 VNRFT---MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
           V R T   +D+   +  P  +KP   GSS+GI     +Q +      +  ++   ++++E
Sbjct: 125 VTRQTPSIVDACRRLPFPMFVKPANLGSSVGISKAHDEQELEAAFSLAKQYDR--KIIVE 182

Query: 170 QYVDGIELTCGVMGDASL--DVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227
           + ++G EL C V+G+ +    +    +P  +FY YE KY    +   +PA +P +   E+
Sbjct: 183 RGIEGRELECSVLGNEAPMASLPCEILPSREFYDYEDKYLLDMARTQVPADLPGERTDEI 242

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287
           +RLA   ++A+ C G++R DF  +  + +++  EIN  PG T +S++P+M  ++G  F  
Sbjct: 243 RRLAVECYRAVECEGMARVDFFLEHGTNRLYINEINTIPGFTSISMYPKMWEHSGIPFCT 302

Query: 288 LLLWMVEDA 296
           LL  ++E A
Sbjct: 303 LLDQLIEFA 311


>gi|330957968|gb|EGH58228.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. maculicola
           str. ES4326]
          Length = 319

 Score =  338 bits (868), Expect = 6e-91,   Method: Composition-based stats.
 Identities = 115/302 (38%), Positives = 170/302 (56%), Gaps = 6/302 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL+SG+A   AL DAG     IDV       L   K D AF VLHG
Sbjct: 21  VAVLFGGKSAEREVSLNSGQAVLKALVDAGVDAFGIDVGGDFLQRLVSEKIDRAFIVLHG 80

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--M 118
             GEDG +Q +LE LEIPYT SG+LASAL+MDK+R+KQV  S G+P     ++   +  +
Sbjct: 81  RGGEDGTMQGLLECLEIPYTGSGVLASALAMDKLRTKQVWQSLGLPTPLHAVLENESDCI 140

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   +  P ++KP   GSS+G+  +     +      +S   +  Q+L+EQ++ G E T
Sbjct: 141 CAATELGFPLIVKPAHEGSSIGMAKVNSVDELIAAWKTAS--TYDSQVLVEQWIQGPEFT 198

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +    L    +  P S FY Y+ KY + ++ + +P  +     +E+++LA  A  AI
Sbjct: 199 VASLRGQVLPPIGLGTPHS-FYDYDAKYLASDTQYRIPCGLGDAQEQELKQLAARACDAI 257

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           G  G +R+D + D    K + LE+N  PGMT  S+ P  A  AG  F++L+L ++ D+  
Sbjct: 258 GIAGWARTDVMQDAQ-GKFWLLEVNTVPGMTDHSLVPMAARAAGLDFQQLVLAILADSVP 316

Query: 299 LR 300
           +R
Sbjct: 317 VR 318


>gi|89067822|ref|ZP_01155266.1| D-alanine--D-alanine ligase [Oceanicola granulosus HTCC2516]
 gi|89046420|gb|EAR52476.1| D-alanine--D-alanine ligase [Oceanicola granulosus HTCC2516]
          Length = 293

 Score =  338 bits (868), Expect = 6e-91,   Method: Composition-based stats.
 Identities = 137/299 (45%), Positives = 187/299 (62%), Gaps = 9/299 (3%)

Query: 5   MGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGE 64
           MGG S+EREVSLS+G+ C  AL +AGF   +ID    +   LA  KPD+ FN LHG +GE
Sbjct: 1   MGGPSAEREVSLSTGRGCVDALREAGFSTIEIDAGPDLAERLAEAKPDVVFNALHGRWGE 60

Query: 65  DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI 124
           DG VQ +LE L +PYTHSG+LASAL+MDK R+K    + G+PV  S L  R  +++ H++
Sbjct: 61  DGCVQGLLEWLRLPYTHSGVLASALAMDKERAKDAFRAEGLPVMESRLATRDEVEAGHVL 120

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
            PPYV+KP   GSS+G+ ++ +  + P  L         +++++E +  G ELT  VMG+
Sbjct: 121 PPPYVVKPYNEGSSVGVYIVAEGANAPPKL----GAEMPERVMVEAFAPGRELTTMVMGE 176

Query: 185 -ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
             +L VT+I      +Y Y+ KY    S H +PA IP +I    +  A  AH+ IGCRG+
Sbjct: 177 RGALGVTDIIT--DGWYDYDAKYKEGGSRHEVPAAIPAEIGAACRDYAERAHRVIGCRGV 234

Query: 244 SRSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           +R+DF +D       +  LEIN QPGMTP S+ PE AA+AG  F EL  W+VEDASC R
Sbjct: 235 TRTDFRWDESRGLDGLVLLEINTQPGMTPTSLVPEQAAWAGIGFPELCTWLVEDASCDR 293


>gi|332974211|gb|EGK11144.1| D-alanine-D-alanine ligase B [Kingella kingae ATCC 23330]
          Length = 307

 Score =  338 bits (867), Expect = 7e-91,   Method: Composition-based stats.
 Identities = 111/299 (37%), Positives = 166/299 (55%), Gaps = 5/299 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSERE+SL SG+A   AL   G      D  ++    L     D+AFN+LHG
Sbjct: 7   VAVLMGGFSSEREISLISGQAIVDALRSKGVDAHPFDPAQTELAKLKKQGFDIAFNILHG 66

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTM 118
            +GEDG VQ  LE L +PYT  G+LASAL MDK R K + S+ G+P+ P +++  N    
Sbjct: 67  TYGEDGTVQGALEALGVPYTGCGVLASALGMDKYRCKLIWSALGLPIPPFVVLHDNSHFA 126

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           + +  +  P  IKP   GSS+G++ +K+   +  +  +         +L EQ++ G E T
Sbjct: 127 EVEQQLGLPLFIKPAAEGSSVGVVKVKQAGDLATEYAKLRDMGLHGVILAEQFMSGGEYT 186

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           CGV    +L    I +P+++FY YE KY   ++ ++ P+ +  D    +Q LA  A +AI
Sbjct: 187 CGVFNRQALPTIRI-IPQTEFYDYEAKYLRDDTVYLCPSDLNADDEARMQHLAQQAFEAI 245

Query: 239 GCR-GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           G    + R DFL D +   ++ LE N  PGMT  S+ P+ A   G  F +L + ++ +A
Sbjct: 246 GGGNSLGRIDFLKDSV-GCLYILEANTLPGMTSHSLIPKSAKQIGIDFADLCIAILNNA 303


>gi|332527085|ref|ZP_08403165.1| D-alanine--D-alanine ligase [Rubrivivax benzoatilyticus JA2]
 gi|332111516|gb|EGJ11498.1| D-alanine--D-alanine ligase [Rubrivivax benzoatilyticus JA2]
          Length = 316

 Score =  338 bits (867), Expect = 7e-91,   Method: Composition-based stats.
 Identities = 111/307 (36%), Positives = 164/307 (53%), Gaps = 13/307 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG S+ER+VSL SG     AL  AG      D        L H   + AF  LHG
Sbjct: 7   VAVLMGGSSAERQVSLMSGNGVLEALRRAGVDAHPFDPAERELAELKHAGFERAFIALHG 66

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV------N 114
             GEDG VQ  LELL IPYT SG++ASA++MDK+ +K++ ++ G+P      +       
Sbjct: 67  RHGEDGTVQGALELLRIPYTGSGVMASAIAMDKVMTKRIWAAEGLPTPRWAWLAPERQAR 126

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
              +     +  P ++KP + GSS+GI  +     +   +  +S   +   +L E+++DG
Sbjct: 127 EHVVAVPDQLGLPLIVKPPREGSSIGITKVAGYSEMQDAVKLAS--EYDADVLCEEFIDG 184

Query: 175 IELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            E+TC V+GD     +L V  I  P    Y +E KY S  + +  P+ +P     E+QRL
Sbjct: 185 EEVTCAVLGDGASARALPVIRIVAP-GGNYDFEHKYFSEETGYHCPSGLPPAEEAEIQRL 243

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
              A++ +GCRG  R+D +     RK F LE+N  PGMT  S+ P  A  AG S+ +L +
Sbjct: 244 TLAAYRLLGCRGWGRADLMIRASDRKPFLLEMNTSPGMTSHSLVPLAARVAGLSYEQLCV 303

Query: 291 WMVEDAS 297
            ++E A+
Sbjct: 304 HVLECAA 310


>gi|327475199|gb|AEA77194.1| D-alanyl-alanine synthetase A [Exiguobacterium sp. EPVM]
          Length = 305

 Score =  338 bits (867), Expect = 8e-91,   Method: Composition-based stats.
 Identities = 127/304 (41%), Positives = 182/304 (59%), Gaps = 12/304 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GGIS EREVSL+SGK    ALE+ G +V  ID        L  L+ D+  + LHG
Sbjct: 3   VAVLYGGISGEREVSLTSGKGMIEALEERGHEVVAIDFHPDRADELLTLQADVVLSALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG VQ++LE+  +PYT SG+LASAL+MDK R+K + ++ G+ +   +L+       
Sbjct: 63  KYGEDGRVQSLLEMAGLPYTGSGVLASALAMDKARAKIIFAAAGIRIARDVLIETGDDID 122

Query: 121 QHLI----SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
             ++      P V+KP + GSS G+ +   +  +   + +  ++     +L+EQY+ G E
Sbjct: 123 AKVVEWGSEFPCVVKPAQEGSSNGLTIAMDEAMLREGIDK--AFACDTAVLVEQYIKGRE 180

Query: 177 LTCGVMGD----ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
           LT  V+G+    A+L V EI +PK++FY YE KYS   S HV PA++P  + +EVQ  A 
Sbjct: 181 LTVPVLGNHGAEAALPVIEI-IPKNEFYDYESKYSEGGSIHVCPAELPEALTEEVQTAAI 239

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
            AH+A+GC G SRSDFL        + LE N  PGMTP+S+FP+ A   G S+ ELL   
Sbjct: 240 KAHRALGCSGYSRSDFLISE-DGLAYILETNTLPGMTPLSLFPDSARAVGISYGELLERF 298

Query: 293 VEDA 296
           +E A
Sbjct: 299 IELA 302


>gi|254491359|ref|ZP_05104539.1| putative D-ala D-ala ligase N-terminal domain protein [Methylophaga
           thiooxidans DMS010]
 gi|224463488|gb|EEF79757.1| putative D-ala D-ala ligase N-terminal domain protein [Methylophaga
           thiooxydans DMS010]
          Length = 312

 Score =  337 bits (866), Expect = 8e-91,   Method: Composition-based stats.
 Identities = 103/298 (34%), Positives = 164/298 (55%), Gaps = 6/298 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG S+ERE+SL SGKA  + L+  G     IDV   +   LA  + D AF VLHG
Sbjct: 14  VAVLMGGRSAEREISLISGKAVLAGLQRTGIDAYGIDVSFDICHQLASGQFDRAFVVLHG 73

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q  L+ + +P+T SG+ AS LSM+K  SKQ     G+P      V++ T   
Sbjct: 74  RGGEDGEIQGFLQAINMPHTGSGVTASVLSMNKRISKQNWQQQGLPTARYEQVSQATDTE 133

Query: 121 Q--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           Q    +  P +IKP+  GSS+G+  +   +++   +  +    + D ++ EQ++ G E T
Sbjct: 134 QLIQQLGLPLIIKPVNEGSSIGMSKVNDAETLQAAIALAL--KYDDDVIAEQWIQGEEYT 191

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             ++   +L    +  P+ +FY +E KY S ++ ++ P  + L+  +++Q+LA  A + +
Sbjct: 192 VAILDGQALPGIRLKTPR-EFYDFEAKYQSNSTEYLCPCGLDLESEEQMQQLAIQAFEGL 250

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           G  G  R DF+ D  + + + LE N  PGMT  S+ P  A  AG  F  L+  ++E +
Sbjct: 251 GMTGWGRIDFMRDG-TGQFYLLEANSVPGMTDHSLVPMAAKQAGLDFDALVWRILETS 307


>gi|292490627|ref|YP_003526066.1| D-alanine--D-alanine ligase [Nitrosococcus halophilus Nc4]
 gi|291579222|gb|ADE13679.1| D-alanine/D-alanine ligase [Nitrosococcus halophilus Nc4]
          Length = 316

 Score =  337 bits (866), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 106/298 (35%), Positives = 164/298 (55%), Gaps = 6/298 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG S+ERE+SL SG A   AL   G     IDV   V   L+  + + AF  LHG
Sbjct: 13  VAVLMGGRSAEREISLKSGTAVLEALLRQGVDAQGIDVGERVLEQLSRGQFERAFIALHG 72

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG++Q  LE L +PYT SG+L SAL+MDK+RSKQ+    G+P     ++N  T  +
Sbjct: 73  RGGEDGVIQGALETLGLPYTGSGVLGSALAMDKLRSKQLWRGMGLPTADFSVLNEGTDLA 132

Query: 121 Q--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                +  P ++KP + GSSLG+  +   +++     ++ ++     ++ EQ++ G E T
Sbjct: 133 LVVANLGLPLMVKPAREGSSLGMRKVDSIEALRAAYREAMAF--DGTVIAEQWLPGAEYT 190

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             ++   +L +  +  P+  FY +E KY +  + ++ P  +  +  + +Q LA  A QA+
Sbjct: 191 AAILTGRALPLIGLETPR-IFYDFEAKYLTDTTRYLCPCGLSEEQAQHLQALALQAFQAL 249

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           G  G  R DF  D  +R    LE+N  PGMT  S+ P  A  AG  F +L+L ++E +
Sbjct: 250 GASGWGRVDFRCDAQARPC-LLEVNTVPGMTAHSLVPMAAQAAGIEFDQLVLQILESS 306


>gi|85373189|ref|YP_457251.1| D-alanine--D-alanine ligase [Erythrobacter litoralis HTCC2594]
 gi|122545201|sp|Q2NCY7|DDL_ERYLH RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|84786272|gb|ABC62454.1| D-alanyl-D-alanine ligase [Erythrobacter litoralis HTCC2594]
          Length = 323

 Score =  337 bits (866), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 127/300 (42%), Positives = 186/300 (62%), Gaps = 5/300 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VLMGG ++EREVSL SG+  A ALE  G  V++ID+DR V   +A   PD+ FN LHG
Sbjct: 9   VVVLMGGWANEREVSLMSGEGVAKALEKRGHTVTRIDMDRQVAAKIAEAAPDVVFNALHG 68

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG VQ +L+L+ +PYTHSG+  S +++DK  +KQ +   G+P+    +V    +  
Sbjct: 69  VPGEDGTVQGMLDLMGVPYTHSGLATSVIAIDKELTKQQLVPRGIPMPGGRIVQSEDLYQ 128

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSI--PLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           Q  ++ PYV+KP+  GSS+G+ ++  + +   P+       W    +LL E ++ G ELT
Sbjct: 129 QDPLARPYVLKPVNEGSSVGVAIVTDESNYGNPIRRDAPGPWQEFRELLAEPFIRGRELT 188

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             V+G  +L VTE+  PKS FY ++ KY+   + HV PA IP +I    ++ A  AH+ +
Sbjct: 189 TAVVGGQALAVTELK-PKSGFYDFDAKYTDGMTEHVCPADIPPEIEALCKKYALEAHRIL 247

Query: 239 GCRGISRSDFLFDPL--SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           GCRG SR+D+ +D       +F LE N QPGMTP+S+ PE AAYAG S+ +L+  +VE A
Sbjct: 248 GCRGTSRTDYRWDDEQGDDGLFVLETNTQPGMTPLSLVPEQAAYAGMSYEDLVEAIVEAA 307


>gi|330964059|gb|EGH64319.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. actinidiae
           str. M302091]
          Length = 319

 Score =  337 bits (866), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 113/302 (37%), Positives = 166/302 (54%), Gaps = 6/302 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL+SG A   AL DAG     IDV       L   K D AF VLHG
Sbjct: 21  VAVLFGGKSAEREVSLNSGHAVLKALLDAGVDAFGIDVGDDFLQRLVSEKIDRAFIVLHG 80

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--M 118
             GEDG +Q +LE LEIPYT SG+LASAL+MDK+R+KQV  S G+      ++      +
Sbjct: 81  RGGEDGTMQGLLECLEIPYTGSGVLASALAMDKLRTKQVWQSLGLATPLHAVLENENDCI 140

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   +  P ++KP   GSS+G+  +     +      +S   +  Q+L+EQ++ G E T
Sbjct: 141 CAATELGFPLIVKPAHEGSSIGMAKVNSVDELIAAWKAAS--TYDSQVLVEQWIQGPEFT 198

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +    L    +  P S FY Y+ KY + ++ + +P  +     +++++LA  A  AI
Sbjct: 199 VASLRGQVLPPIGLGTPHS-FYDYDAKYLASDTQYRIPCGLDDAQEQQLKQLAARACDAI 257

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           G  G +R+D + D    K + LE+N  PGMT  S+ P  A  AG  F++L+L ++ D+  
Sbjct: 258 GIAGWARTDVMQDA-EGKFWLLEVNTVPGMTDHSLVPMAARAAGLDFQQLVLAILADSVQ 316

Query: 299 LR 300
            R
Sbjct: 317 AR 318


>gi|124265657|ref|YP_001019661.1| D-alanine--D-alanine ligase [Methylibium petroleiphilum PM1]
 gi|190359164|sp|A2SCY7|DDL_METPP RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|124258432|gb|ABM93426.1| D-alanine--D-alanine ligase [Methylibium petroleiphilum PM1]
          Length = 319

 Score =  337 bits (866), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 108/307 (35%), Positives = 168/307 (54%), Gaps = 13/307 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG S+ER++SL SG     AL+DAG      D      + L        F  LHG
Sbjct: 13  VAVLMGGTSAERDISLMSGGGVLKALQDAGVDAHAFDPKDHELVELRRQGFQRCFIALHG 72

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG VQ  LELL IPYT SG++ASA++MDK+ +K+V  + G+P    + +       
Sbjct: 73  RHGEDGTVQGALELLRIPYTGSGVMASAIAMDKIMTKRVWLAEGLPTPRYVRLAPDEQTP 132

Query: 121 QHL------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
           + +      +  P ++KP + GSS+G+  +     +   +  S+   H   +L E+++DG
Sbjct: 133 ERVRGVPDDLGLPLIVKPPREGSSIGVTKVLGYSQMQDAVALSA--RHDPDVLCEEFIDG 190

Query: 175 IELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            E+TC V+G+     +L V  I  P++  Y Y+ KY +    ++ P+ +P D   E+QR+
Sbjct: 191 AEVTCPVLGEGANARALPVIRIVPPEAG-YDYQNKYFTDEVKYLCPSGLPADEEAEIQRI 249

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
              A++A+GCRG  R+D +     RK F LE+N  PGMT  S+ P  A  AG  + +L L
Sbjct: 250 VLAAYRALGCRGWGRADLMIRASDRKPFLLEMNTSPGMTGHSLVPMSAKAAGLGYEQLCL 309

Query: 291 WMVEDAS 297
            +++ A+
Sbjct: 310 HILQGAA 316


>gi|222530007|ref|YP_002573889.1| D-alanyl-alanine synthetase A [Caldicellulosiruptor bescii DSM
           6725]
 gi|254767717|sp|B9MLC6|DDL_ANATD RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|222456854|gb|ACM61116.1| D-alanine/D-alanine ligase [Caldicellulosiruptor bescii DSM 6725]
          Length = 364

 Score =  337 bits (865), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 98/345 (28%), Positives = 175/345 (50%), Gaps = 51/345 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +AVL GG+S+E E+S+ S K+    ++   ++V  I + +    +L   K          
Sbjct: 6   VAVLFGGVSTEHEISIVSAKSIMQNMDKEKYEVIPIGITKEGKWLLYTGKIEDLDSKWTQ 65

Query: 52  -----------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
                                        D+ F VLHG  GEDG VQ +LEL  IPY   
Sbjct: 66  FSIECFVSPDRTKKALVKVKDNEATFIDIDVVFPVLHGLNGEDGTVQGLLELSGIPYVGC 125

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPL 133
           G+L+SA+ MDK  +K++    G+P    ++V +    +         +   S P  +KP 
Sbjct: 126 GVLSSAICMDKAFAKKLALLEGIPQGHFLVVYKNEYSAKKDYFIRRIESEFSYPVFVKPA 185

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
             GSS+GI   K  + + L + +  ++ +  ++LIEQ ++  E+ C V+G+  + V+E  
Sbjct: 186 NSGSSVGISKAKDREDLVLAIHE--AFLYDTKILIEQAINAREIECAVLGNDEVFVSEPG 243

Query: 194 --VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
             +P  +FYSYE KY   +S  ++PA++P ++ +E++ LA   ++   C G++R DF  D
Sbjct: 244 EIIPSREFYSYEAKYIDNSSELIIPARLPKEVTEEIKDLAGRIYKIFECCGMARVDFFVD 303

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             + KV++ E+N  PG T +S++P++  ++G  + +L+  ++  A
Sbjct: 304 KDTNKVYFNEVNTIPGFTSISMYPKLMEFSGIPYSQLIDKLISLA 348


>gi|74316140|ref|YP_313880.1| D-alanine--D-alanine ligase [Thiobacillus denitrificans ATCC 25259]
 gi|123612472|sp|Q3SMH0|DDL_THIDA RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|74055635|gb|AAZ96075.1| D-alanine--D-alanine ligase [Thiobacillus denitrificans ATCC 25259]
          Length = 310

 Score =  337 bits (865), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 99/298 (33%), Positives = 160/298 (53%), Gaps = 6/298 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AV++GG S+ER VSL+SG A  +AL   G      D        L   + D  F  LHG
Sbjct: 13  VAVMLGGTSAERPVSLNSGNAVLAALTRQGIDAHAFDPATRSLGDLMSGEFDRVFIALHG 72

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--FTM 118
            +GEDG +Q  LELL IPYT SG++ASA+ MDK R+K +  + G+P     +++      
Sbjct: 73  RYGEDGCMQGALELLGIPYTGSGVMASAVGMDKWRTKLLWRAAGLPTADWAMLDATSDFA 132

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            ++  +  P  +KP + GSS+G+  + +  ++     +++   H   +L E+++DG E T
Sbjct: 133 ATEARLGLPIFVKPAREGSSIGMSKVTEAGTLQAAYEKAA--EHDALVLAEKFIDGAEFT 190

Query: 179 CGVMGDASLDVTEI-AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
            G++GD++L +  +    +  FY +E KY   ++ +  PA +P      +++LA  A + 
Sbjct: 191 VGIVGDSALPLIRLQPAAEKAFYDFEAKYLRDDTQYHCPAGLPDAQEMSLRKLALDAFRL 250

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           +G RG  R D + D L    + LE+N  PGMT  S+ P  A  AG  F  L + ++E 
Sbjct: 251 LGGRGWGRVDLMTDRLGN-PYLLEVNTSPGMTDHSLVPMAARVAGIDFDALCVTILEQ 307


>gi|91776618|ref|YP_546374.1| D-alanine--D-alanine ligase [Methylobacillus flagellatus KT]
 gi|122985407|sp|Q1GZ04|DDL_METFK RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|91710605|gb|ABE50533.1| D-alanine--D-alanine ligase [Methylobacillus flagellatus KT]
          Length = 302

 Score =  337 bits (865), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 109/298 (36%), Positives = 158/298 (53%), Gaps = 8/298 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S EREVSL SG A  +AL   G      D        LA    D  F  LHG
Sbjct: 8   VAVLLGGKSGEREVSLKSGAAVLAALRRNGVDAHAFDPAERALSELA--GFDRVFIALHG 65

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--M 118
            +GEDG +Q  LEL+ IPYT SG++AS++ MDK R+K +  + GV      LV   +   
Sbjct: 66  RYGEDGTIQGALELMGIPYTGSGVMASSVGMDKWRTKLLWRAAGVVTPDFELVTADSNFD 125

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
             +  +  P  +KP   GSS+GI  +K    +      ++       ++ EQ+V G E T
Sbjct: 126 AIERKLGLPLFVKPANEGSSIGISKVKAAGGLQAAYALAA--KSDPLVIAEQFVGGGEYT 183

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
            G++G A+L V  I VP ++FY YE KY   ++ ++ P  +   + ++++  A  A + +
Sbjct: 184 VGILGGAALPVIRI-VPANEFYDYEAKYLRDDTQYLCPCGLDASLEEQIKAEALQAFRIV 242

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           G RG  R DFL D   R  ++LE+N  PGMT  S+ P  A   G  F EL+L ++E A
Sbjct: 243 GGRGWGRVDFLMDEAGRH-YFLEVNTSPGMTDHSLVPMGAKAVGLGFDELVLSILELA 299


>gi|213966565|ref|ZP_03394716.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. tomato T1]
 gi|301384720|ref|ZP_07233138.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. tomato Max13]
 gi|302059792|ref|ZP_07251333.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. tomato K40]
 gi|302131739|ref|ZP_07257729.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. tomato NCPPB
           1108]
 gi|213928415|gb|EEB61959.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. tomato T1]
 gi|331016736|gb|EGH96792.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. lachrymans
           str. M302278PT]
          Length = 319

 Score =  337 bits (865), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 113/302 (37%), Positives = 167/302 (55%), Gaps = 6/302 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL+SG A   AL DAG     IDV       L   K D AF VLHG
Sbjct: 21  VAVLFGGKSAEREVSLNSGNAVLKALLDAGVDAFGIDVGDDFLQRLVSEKIDRAFIVLHG 80

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--M 118
             GEDG +Q +LE LEIPYT SG+LASAL+MDK+R+KQV  S G+      ++      +
Sbjct: 81  RGGEDGTMQGLLECLEIPYTGSGVLASALAMDKLRTKQVWQSLGLATPLHAVLENENDCI 140

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   +  P ++KP   GSS+G+  +     +      +S   +  Q+L+EQ++ G E T
Sbjct: 141 CAATELGFPLIVKPAHEGSSIGMAKVNSVDELIAAWKAAS--TYDSQVLVEQWIQGPEFT 198

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +    L    +  P S FY Y+ KY + ++ + +P  +     +++++LA  A  AI
Sbjct: 199 VASLRGQVLPPIGLGTPHS-FYDYDAKYLASDTQYRIPCGLDDAQEQQLKQLAARACDAI 257

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           G  G +R+D + D    K + LE+N  PGMT  S+ P  A  AG +F++L+L ++ D+  
Sbjct: 258 GIAGWARTDVMQDA-EGKFWLLEVNTVPGMTDHSLVPMAARAAGLNFQQLVLAILADSVQ 316

Query: 299 LR 300
            R
Sbjct: 317 AR 318


>gi|330501926|ref|YP_004378795.1| D-alanine--D-alanine ligase [Pseudomonas mendocina NK-01]
 gi|328916212|gb|AEB57043.1| D-alanine--D-alanine ligase [Pseudomonas mendocina NK-01]
          Length = 313

 Score =  337 bits (865), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 110/302 (36%), Positives = 168/302 (55%), Gaps = 6/302 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL SG A  SAL+ AG     IDV       L   K D AF VLHG
Sbjct: 15  VAVLFGGKSAEREVSLKSGNAVLSALQAAGVDAFGIDVGDDFLARLNSEKIDRAFIVLHG 74

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTM 118
             GEDG +Q +LE   IPYT SGILASAL+MDK+R+KQV  S G+P     ++       
Sbjct: 75  RGGEDGSMQGLLECAGIPYTGSGILASALAMDKLRTKQVWHSLGLPTPRHAVLTSQADCK 134

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   +  P ++KP   GSS+G+  ++  +++      ++   +  Q+L+EQ++ G E T
Sbjct: 135 AAATELGFPLIVKPAHEGSSIGMAKVESVEALVAAWQDAA--RYDSQVLVEQWIAGPEYT 192

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             V+    L    +  P + FY Y+ KY + ++ + +P  +  +   E++ L   A +A+
Sbjct: 193 IAVLRGEVLPPIGLGTPHT-FYDYDAKYLADDTQYRIPCGLSAEKEAELKSLTARACEAV 251

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           G +G +R+D + D    + + LE+N  PGMT  S+ P  A  AG  F++L+L ++ D+  
Sbjct: 252 GTQGWARADVMQDAS-GQFWLLEVNTVPGMTDHSLVPMAARAAGLDFQQLVLAILADSVE 310

Query: 299 LR 300
            R
Sbjct: 311 AR 312


>gi|295402558|ref|ZP_06812507.1| D-alanine/D-alanine ligase [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|312112530|ref|YP_003990846.1| D-alanine/D-alanine ligase [Geobacillus sp. Y4.1MC1]
 gi|294975406|gb|EFG51035.1| D-alanine/D-alanine ligase [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|311217631|gb|ADP76235.1| D-alanine/D-alanine ligase [Geobacillus sp. Y4.1MC1]
          Length = 364

 Score =  337 bits (865), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 94/347 (27%), Positives = 159/347 (45%), Gaps = 54/347 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           + +L GG S E  VSLS+  A  +A++   F V  I +      +               
Sbjct: 5   VGILYGGKSPEHNVSLSTAMAVMNAIDKTKFDVIPIYITTEGQWIKGERLTGQVTEIKQL 64

Query: 47  --------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYT 80
                                          D+ F +LHG  GEDG VQ +LELL IPY 
Sbjct: 65  QFQSEAKAIIPVALNQTPTAADGKKQEEAAVDVIFPLLHGPNGEDGTVQGLLELLNIPYV 124

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIK 131
            +G+LASA+ MDK+  K + +  G+     +   +              +  +  P  +K
Sbjct: 125 GNGVLASAVGMDKVVMKNLFAQAGLRQAKYVSFTKREWSKNEEAAYDKVEQALGYPCFVK 184

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--DV 189
           P   GSS+GI   K+   +      + ++ +  ++++E+ + G E+  GV+G+      V
Sbjct: 185 PANAGSSVGITKCKRRADLQAAF--AEAFKYDRKIIVEEAIVGREIEIGVIGNDDPICSV 242

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
               VPK +FY Y+ KY   N+  ++PA +  + Y+ ++++A  A +A+   G+ R+DF 
Sbjct: 243 VGEIVPKKEFYDYQAKYEDGNTELIIPADVTSEQYETIKQMAITAFKALDLSGLVRADFF 302

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                 +V+  EIN  PG TP S+FP +  ++G S+ EL+  +V+ A
Sbjct: 303 L-GEDGEVYINEINTMPGFTPYSMFPLLWKHSGISYPELIERLVQLA 348


>gi|330877131|gb|EGH11280.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. morsprunorum
           str. M302280PT]
          Length = 319

 Score =  337 bits (864), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 113/302 (37%), Positives = 166/302 (54%), Gaps = 6/302 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL+SG A   AL DAG     IDV       L   K D AF VLHG
Sbjct: 21  VAVLFGGKSAEREVSLNSGNAVLKALLDAGVDAFGIDVGDDFLQRLVSEKIDRAFIVLHG 80

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--M 118
             GEDG +Q +LE LEIPYT SG+LASAL+MDK+R+KQV  S G+      ++      +
Sbjct: 81  RGGEDGTMQGLLECLEIPYTGSGVLASALAMDKLRTKQVWQSLGLATPLHAVLENENDCI 140

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   +  P ++KP   GSS+G+  +     +      +S   +  Q+L+EQ++ G E T
Sbjct: 141 CAATELGFPLIVKPAHEGSSIGMAKVNSVDELIAAWKAAS--TYDSQVLVEQWIQGPEFT 198

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +    L    +  P S FY Y+ KY + ++ + +P  +     +++++LA  A  AI
Sbjct: 199 VASLRGQVLPPIGLGTPHS-FYDYDAKYLASDTQYRIPCGLDYAQEQQLKQLAARACDAI 257

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           G  G +R+D + D    K + LE+N  PGMT  S+ P  A  AG  F++L+L ++ D+  
Sbjct: 258 GIAGWARTDVMQDAQ-GKFWLLEVNTVPGMTDHSLVPMAARAAGLDFQQLVLAILADSVQ 316

Query: 299 LR 300
            R
Sbjct: 317 AR 318


>gi|256751680|ref|ZP_05492555.1| D-alanine/D-alanine ligase [Thermoanaerobacter ethanolicus CCSD1]
 gi|307265111|ref|ZP_07546671.1| D-alanine/D-alanine ligase [Thermoanaerobacter wiegelii Rt8.B1]
 gi|256749489|gb|EEU62518.1| D-alanine/D-alanine ligase [Thermoanaerobacter ethanolicus CCSD1]
 gi|306919909|gb|EFN50123.1| D-alanine/D-alanine ligase [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 359

 Score =  337 bits (864), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 100/345 (28%), Positives = 170/345 (49%), Gaps = 51/345 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           +AVL GG S E EVSL S K+  + L+   +++  I + +     L              
Sbjct: 6   IAVLFGGQSGEHEVSLMSAKSIINNLDKDKYEIYMIGITKKGEWYLYRGDVEKIETGEWE 65

Query: 50  ----------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81
                                         D+ F VLHG  GEDG +Q +LELL+IPY  
Sbjct: 66  KEGIPATMGASTKYRGIITFEDGKNGFYPIDVVFPVLHGPNGEDGTIQGLLELLDIPYVG 125

Query: 82  SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL-------ISPPYVIKPLK 134
           + +L+SAL MDK+ +K++    G+P    ++V R  ++           +  P  +KP  
Sbjct: 126 ANVLSSALCMDKVFTKRIFKEAGLPTPDFVVVYRKEIEDLEAIKKKVEHLGYPCFVKPAN 185

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--DVTEI 192
            GSS+GI  +  ++ +P  L  ++   +  +LLIE+ +D  E+ C V+G+ +    +   
Sbjct: 186 LGSSVGITKVHNEEELPGALKLAA--KYDRKLLIERGIDAREIECSVLGNENPQASIAGE 243

Query: 193 AVPKSDFYSYELKYSSLN-STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
            VP ++FY Y  KY     S  ++PA +P +  +EV++LA  A++A+  RG++R DFL D
Sbjct: 244 IVPSNEFYDYNAKYFDGGKSLLLIPAPLPDEKMEEVRQLAIKAYKALDLRGMARVDFLMD 303

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             +  ++  E+N  PG T +S++P++   +G  +  LL  ++  A
Sbjct: 304 RNTGTLYLNEVNTIPGFTKISMYPKLWEVSGKPYSILLDELINLA 348


>gi|89902192|ref|YP_524663.1| D-alanine--D-alanine ligase [Rhodoferax ferrireducens T118]
 gi|123091124|sp|Q21SX1|DDL_RHOFD RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|89346929|gb|ABD71132.1| D-alanine--D-alanine ligase [Rhodoferax ferrireducens T118]
          Length = 346

 Score =  337 bits (864), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 109/303 (35%), Positives = 164/303 (54%), Gaps = 9/303 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG S+EREVSL SG+    AL   G      D        L        F  LHG
Sbjct: 29  VAVLMGGASAEREVSLMSGQGVLQALISQGVDAHAFDPAERDLAELKVEGFSHCFIALHG 88

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--FTM 118
            FGEDG VQ  LELL IPYT SG++AS++++DK+ +K++  S G+P      V+    T 
Sbjct: 89  RFGEDGTVQGALELLGIPYTGSGVMASSIAIDKVMTKRIWRSEGLPTPEWRQVDSAAATS 148

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           ++   +  P ++KP + GS++G+  + + +        ++   H   +L EQ+V G E+T
Sbjct: 149 EAFAALGSPMIVKPDREGSTIGLTKVTQIEQCGAAYALAA--RHDAMVLCEQFVKGDEVT 206

Query: 179 CGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
             ++G      +L V  I  P  + Y Y+ KY +  + +++PA +P      +Q+LA  A
Sbjct: 207 IPLLGSGAGAHALPVIRIVAPDGN-YDYQNKYFTDTTQYLVPANLPAGEEAHIQQLALKA 265

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           +Q +GCRG +R D + D  +R  F LEIN  PGMTP S+ P  A  AG S+  L L ++ 
Sbjct: 266 YQVLGCRGWARVDVMIDARTRAPFLLEINTSPGMTPHSLVPMAAKAAGVSYPALCLEVLR 325

Query: 295 DAS 297
            A+
Sbjct: 326 HAT 328


>gi|312135724|ref|YP_004003062.1| d-alanine/d-alanine ligase [Caldicellulosiruptor owensensis OL]
 gi|311775775|gb|ADQ05262.1| D-alanine/D-alanine ligase [Caldicellulosiruptor owensensis OL]
          Length = 364

 Score =  337 bits (864), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 99/345 (28%), Positives = 177/345 (51%), Gaps = 51/345 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +AVL GG+S+E E+SL S K+    ++   +++  I + +    +L   K          
Sbjct: 6   VAVLFGGVSTEHEISLVSAKSIMQNMDKEKYEIIPIGITKEGKWLLYTGKIEDLDSKWTQ 65

Query: 52  -----------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
                                        D+ F VLHG  GEDG VQ +LEL +IPY   
Sbjct: 66  FSIECFISPDRTKKALVKIKDNEATFIDIDVIFPVLHGLNGEDGTVQGLLELSDIPYVGC 125

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPL 133
           G+L+SA+ MDK  +K++    G+P    ++V +    +         +   S P  +KP 
Sbjct: 126 GVLSSAICMDKAFAKKLALLEGIPQGHFLVVYKNEYSAKKDYFIRRIESEFSYPVFVKPA 185

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
             GSS+GI   K  + + L + +  ++ +  ++LIEQ ++  E+ C V+G+  + V+E  
Sbjct: 186 NSGSSVGISKAKDREDLVLAIHE--AFLYDTKILIEQAINAREIECAVLGNDEVFVSEPG 243

Query: 194 --VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
             +P  +FYSYE KY   +S  ++PA++P ++ +E++ LA   ++   C G++R DF  D
Sbjct: 244 EIIPSREFYSYEAKYIDNSSELIIPARLPKEVTEEIKDLAVRIYKIFECCGMARVDFFVD 303

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             + KV++ E+N  PG T +S++P++  ++G S+ +L+  ++  A
Sbjct: 304 KDTNKVYFNEVNTIPGFTNISMYPKLMEFSGISYSQLIDKLISLA 348


>gi|332528461|ref|ZP_08404453.1| d-alanine--d-alanine ligase [Hylemonella gracilis ATCC 19624]
 gi|332042140|gb|EGI78474.1| d-alanine--d-alanine ligase [Hylemonella gracilis ATCC 19624]
          Length = 333

 Score =  336 bits (863), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 106/303 (34%), Positives = 156/303 (51%), Gaps = 9/303 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG S+EREVSL SG     AL+  G      D  +     L        F  LHG
Sbjct: 11  VAVLMGGASAEREVSLMSGTGVLKALQSRGVDAHAFDPAQRELGELKRDGYARCFIALHG 70

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG VQ  LELL IPYT SG+LAS+++MDK+ +K++  + G+P      V       
Sbjct: 71  RFGEDGTVQGALELLGIPYTGSGVLASSVAMDKVMTKRIWLAEGLPTPRWKNVTSVDETR 130

Query: 121 QHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
             L  +  P ++KP + GS++G+  +            ++   H   +L EQ++ G E+T
Sbjct: 131 AALAELGAPMIVKPAREGSTIGLTKVNDATQCAQAYQLAA--QHDPLVLCEQFIAGDEVT 188

Query: 179 CGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
             V+G      +L    I  P    Y YE KY S  + +++P+ +P      +Q L   +
Sbjct: 189 VPVIGSGADARALPAIRIVAP-GGNYDYEHKYFSDGTQYIIPSGLPEGEEARIQDLVLRS 247

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             A+GCRG +R+D + D  +R  + LEIN  PGMT  S+ P  A  AG S+ +L L ++ 
Sbjct: 248 FHALGCRGWARADVMIDAKTRTPYLLEINTSPGMTGHSLVPMSAKAAGISYEDLCLRLLA 307

Query: 295 DAS 297
            A+
Sbjct: 308 TAT 310


>gi|326388921|ref|ZP_08210503.1| D-alanine--D-alanine ligase [Novosphingobium nitrogenifigens DSM
           19370]
 gi|326206521|gb|EGD57356.1| D-alanine--D-alanine ligase [Novosphingobium nitrogenifigens DSM
           19370]
          Length = 313

 Score =  336 bits (863), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 125/304 (41%), Positives = 184/304 (60%), Gaps = 5/304 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG S+ER VSL SG   A ALE  G KV++ID+ R +   LA   PD+ FN LHG
Sbjct: 8   VAVLMGGWSNERPVSLMSGNGVADALESRGHKVTRIDMGRDIAQRLAEAAPDVVFNALHG 67

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG VQ +++L+ + YTHSG+ AS +++DK  +KQ +   G+P+    +V    +  
Sbjct: 68  TPGEDGTVQGMMDLMGLTYTHSGLTASVIAIDKELTKQALVPHGIPMPGGRIVKSEDIFV 127

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSI--PLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           +  +  PYV+KP+  GSS+G+ ++  + +   P+       W   D LL E Y+ G ELT
Sbjct: 128 RDPLPRPYVLKPVNEGSSVGVAIVTVEGNYGNPIGRETVGPWQAFDHLLAEPYIRGRELT 187

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             V+GD++L VTE+  PKS FY ++ KY+   + H+ PA IP +I +  + +A  AH+ +
Sbjct: 188 TAVLGDSALLVTELR-PKSGFYDFDAKYTDGMTDHICPADIPEEIAQACKDIALKAHRLL 246

Query: 239 GCRGISRSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           GCRG SRSDF +D       +F LE+N QPGMTP+S+ PE A   G  +  L+  +V +A
Sbjct: 247 GCRGTSRSDFRWDDEQGIDGLFLLEVNTQPGMTPLSLVPEQARALGMDYATLVEAIVAEA 306

Query: 297 SCLR 300
              +
Sbjct: 307 LERK 310


>gi|329901114|ref|ZP_08272730.1| D-alanine-D-alanine ligase [Oxalobacteraceae bacterium IMCC9480]
 gi|327549213|gb|EGF33801.1| D-alanine-D-alanine ligase [Oxalobacteraceae bacterium IMCC9480]
          Length = 322

 Score =  336 bits (863), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 100/305 (32%), Positives = 157/305 (51%), Gaps = 12/305 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VL+GG S+EREVSL SG    +AL   G      D        LA  + D  F  LHG
Sbjct: 11  VGVLLGGRSAEREVSLMSGNGVLAALRSKGIDAHPFDPAERSLAELATEQFDRVFIALHG 70

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117
            FGEDG +Q  LELL IPYT SG++ASA+ +DK+ +K++  S  +P    ++++  T   
Sbjct: 71  RFGEDGTLQGALELLGIPYTGSGVMASAIGIDKVMTKRIWLSHDLPTPRFLVLDAQTPAD 130

Query: 118 --MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175
              +    +  P ++K    GS++GI  +  D  +       +   +   +L E+++ G 
Sbjct: 131 VLDEVPEELGLPLMLKAPHEGSTIGIAKVIVDADMHTGFALCA--QYDSVVLAEEFISGR 188

Query: 176 ELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           E+T  V+G      +L + EI  P+ + Y YE KY S ++ ++ PA +  ++   +Q +A
Sbjct: 189 EITIPVLGSGHGARALPIVEIRAPEGN-YDYEHKYFSDDTVYLCPAPLADEVTATLQDIA 247

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A  A+GC G  R D +        F LE+N  PGMT  S+ P  A  AG S+ +L + 
Sbjct: 248 VRAFNAVGCTGWGRVDIMLRAGDDAPFLLEVNTSPGMTSHSLVPMAAKAAGISYEDLCVE 307

Query: 292 MVEDA 296
           ++  A
Sbjct: 308 ILSTA 312


>gi|302872435|ref|YP_003841071.1| D-alanine/D-alanine ligase [Caldicellulosiruptor obsidiansis OB47]
 gi|302575294|gb|ADL43085.1| D-alanine/D-alanine ligase [Caldicellulosiruptor obsidiansis OB47]
          Length = 364

 Score =  336 bits (863), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 97/345 (28%), Positives = 175/345 (50%), Gaps = 51/345 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +AVL GG+S+E E+S+ S K+    ++   +++  I + +    +L   K          
Sbjct: 6   VAVLFGGVSTEHEISIVSAKSIMQNMDKEKYEIIPIGITKEGKWLLYTGKIEDLDSKWTQ 65

Query: 52  -----------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
                                        D+ F VLHG  GEDG VQ +LEL  IPY   
Sbjct: 66  FSIECFVSPDRTKKALVKIKDNEATFIDIDVVFPVLHGLNGEDGTVQGLLELSNIPYVGC 125

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPL 133
           G+L+SA+ MDK  +K++    G+P    ++V +    +         +   S P  +KP 
Sbjct: 126 GVLSSAICMDKAFAKKLALLEGIPQGHFLVVYKNEYSAKKDYFIRRIESEFSYPVFVKPA 185

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
             GSS+GI   K  + + L + +  ++ +  ++LIEQ ++  E+ C V+G+  + V+E  
Sbjct: 186 NSGSSVGISKAKDREDLVLAIHE--AFLYDTKVLIEQAINAREIECAVLGNDEVFVSEPG 243

Query: 194 --VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
             +P  +FYSYE KY   +S  ++PA++P ++ +E++ LA   ++   C G++R DF  D
Sbjct: 244 EIIPSREFYSYEAKYIDDSSELIIPARLPKEVTEEIKDLAARIYKIFECCGMARVDFFVD 303

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             + KV++ E+N  PG T +S++P++  ++G  + +L+  ++  A
Sbjct: 304 KDTNKVYFNEVNTIPGFTSISMYPKLMEFSGIPYSQLIDKLISLA 348


>gi|90407786|ref|ZP_01215964.1| D-alanine-D-alanine ligase B [Psychromonas sp. CNPT3]
 gi|90311146|gb|EAS39253.1| D-alanine-D-alanine ligase B [Psychromonas sp. CNPT3]
          Length = 307

 Score =  336 bits (863), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 108/299 (36%), Positives = 167/299 (55%), Gaps = 10/299 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL SG+A  SAL   G     ID        L     D AF VLHG
Sbjct: 8   VAVLFGGTSAEREVSLRSGQAVLSALVAQGINAIAIDPKIDDVTQLKAQGFDRAFIVLHG 67

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +L  L+IPYT S +L+SA++MDK ++KQ+  S G+P     ++ +   D 
Sbjct: 68  RGGEDGTIQGLLTYLQIPYTGSDVLSSAITMDKSKTKQIWKSVGLPTAKYQIIIKNHYDP 127

Query: 121 QHL------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
                    +S   ++KP+  GSS+G+  +   + +   LL   ++    ++L+E +++G
Sbjct: 128 SQAKDILKELSGTVMVKPVNEGSSIGMAKVDNVEDLNKALLD--AFKFDKKVLLETWIEG 185

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
            E T  ++  A+L   ++A   +DFY Y+ KY S  + +  P  +     + + +LA  A
Sbjct: 186 EEYTVSMLSGAALPAIKMAT-DNDFYDYQAKYQSTETRYYCPCGLDDQEMQTLNKLANAA 244

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
             +IGC+G  R DF+ D  +++ F LEIN  PGMT  S+ P+ A  AGYSF +L+L ++
Sbjct: 245 FSSIGCQGWGRVDFMRDT-NKQWFLLEINSVPGMTETSLVPKAAKQAGYSFEQLVLEIL 302


>gi|310823485|ref|YP_003955843.1| d-alanine--d-alanine ligase [Stigmatella aurantiaca DW4/3-1]
 gi|309396557|gb|ADO74016.1| D-alanine--D-alanine ligase [Stigmatella aurantiaca DW4/3-1]
          Length = 314

 Score =  336 bits (863), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 117/302 (38%), Positives = 177/302 (58%), Gaps = 9/302 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VL+GG+SSER+VSL +G A A AL   G+ V +IDV + V   L   K D+A+  LHG
Sbjct: 14  VGVLLGGLSSERDVSLRTGAAVAKALRSLGYDVVEIDVGKDVAARLTAEKVDVAWLALHG 73

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG +Q +LE L IPYT SG+LASA+ MDK+ +K + ++ G+P  P       T   
Sbjct: 74  RYGEDGSIQGLLESLFIPYTGSGVLASAVGMDKVYAKWIFTTHGIPTPPYKTFKDATSAR 133

Query: 121 QHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
           +       S P V+KP + GSS+G+ V K  ++    +  ++   +   LL+EQ++ G E
Sbjct: 134 EAADTLPFSYPVVVKPSREGSSVGVHVCKTKEAYLAAVEDAA--RYAGTLLVEQFIPGRE 191

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLN-STHVLPAKIPLDIYKEVQRLAFLAH 235
           +   V+ D +L V E+ V + +FY +  KY+S + + ++ PA +P D Y+ V  +   AH
Sbjct: 192 VQGAVLDDEALGVIEVVVAR-EFYDHTAKYTSGSGTKYLFPAPLPADQYERVNAVCLAAH 250

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           +A+GC+G SRSD +       VF LE N  PGMT  S+ P++AA  G  F  L   +++ 
Sbjct: 251 RALGCQGASRSDVIITE-GGDVFVLETNTLPGMTETSLLPKIAAGRGIDFPALCERILQG 309

Query: 296 AS 297
           AS
Sbjct: 310 AS 311


>gi|237749167|ref|ZP_04579647.1| D-alanine-D-alanine ligase [Oxalobacter formigenes OXCC13]
 gi|229380529|gb|EEO30620.1| D-alanine-D-alanine ligase [Oxalobacter formigenes OXCC13]
          Length = 321

 Score =  336 bits (863), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 99/303 (32%), Positives = 160/303 (52%), Gaps = 9/303 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VL GG S EREVSL SGKA   AL+  G      D        L   K D  F  LHG
Sbjct: 13  VGVLYGGKSGEREVSLMSGKAVHEALKSKGIDAHLFDTGTHTVAELEKEKFDRVFIALHG 72

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTM 118
            +GEDG +Q +LE L++PYT SG++ASA++MDK+ +K++  + G+P      +  N    
Sbjct: 73  IYGEDGCMQGLLEELQVPYTGSGVMASAIAMDKIMTKRLWLAEGLPTPRYTELKANTDFN 132

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           +    +  P ++KP   GS+LG+  +     +      ++   H   +L E++++G+ELT
Sbjct: 133 EVVAKLGLPLIVKPACEGSTLGLTRVTDASQMKEAYELAA--THDQSVLAEEFIEGMELT 190

Query: 179 CGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
           C V+       +L +  I  P ++ Y Y+ KY S  + ++ P  +  ++ K +Q+    +
Sbjct: 191 CAVLERDGKPEALPMIRIIAPGAN-YDYQNKYFSDETKYLCPCGLDAELEKSIQQYVVQS 249

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           ++A+GCRG  R D +      K F LE+N  PGMT  S+ P  A  AG  + +L + ++ 
Sbjct: 250 YRALGCRGWGRVDVMLRSTDNKPFLLELNSSPGMTGHSLVPMAAKQAGLDYADLCVTLLA 309

Query: 295 DAS 297
            A+
Sbjct: 310 AAT 312


>gi|262380535|ref|ZP_06073689.1| D-alanine-D-alanine ligase B [Acinetobacter radioresistens SH164]
 gi|262297981|gb|EEY85896.1| D-alanine-D-alanine ligase B [Acinetobacter radioresistens SH164]
          Length = 311

 Score =  336 bits (862), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 106/298 (35%), Positives = 165/298 (55%), Gaps = 8/298 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL SG+A   AL  +G +    D        L  +  D AF VLHG
Sbjct: 10  VAVLLGGKSAEREVSLDSGRAVLEALIRSGVEAEAFDPQERCVTEL--VNYDRAFIVLHG 67

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LE L IPYT +G+  SA+ MDK+++KQV     +P  P  +V++     
Sbjct: 68  RGGEDGQIQGVLEWLNIPYTGTGVQGSAIGMDKIKTKQVWQGSELPTAPHRIVSKDADAD 127

Query: 121 Q--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           +    +  P++IKP+  GSS+G+  ++K +  P  L +++   H   ++ E++++G E T
Sbjct: 128 EVIASLGLPFIIKPVHEGSSIGMSKVEKPEDFPEALAKAT--EHDAVVMAEKWINGREFT 185

Query: 179 CGVMGDASLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
             ++   +L V  +  PK   FY YE KY+  +  + +P  +     K +Q LA  A QA
Sbjct: 186 IVLLNGQALPVIRLEPPKDVAFYDYEAKYNRNDVQYGIPCGLSEAEEKMLQELALRAFQA 245

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           +GC+G  R D + D      + LE+N  PGMT  S+ P+ A   GY F +L + ++E 
Sbjct: 246 VGCKGWGRIDAMQDEQGN-FWLLEVNTVPGMTSHSLVPKAAKAVGYDFDQLCVTILEQ 302


>gi|169831401|ref|YP_001717383.1| D-alanine--D-alanine ligase [Candidatus Desulforudis audaxviator
           MP104C]
 gi|229485966|sp|B1I3W6|DDL_DESAP RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|169638245|gb|ACA59751.1| D-alanine--D-alanine ligase [Candidatus Desulforudis audaxviator
           MP104C]
          Length = 306

 Score =  336 bits (862), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 120/303 (39%), Positives = 187/303 (61%), Gaps = 11/303 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VLMGG+S+EREVSL SG+A  +ALE  G++V  IDV+R V   +     +LAF  LHG
Sbjct: 5   IGVLMGGLSAEREVSLRSGRAVCAALESRGYEVVPIDVNRDVARTVRETGIELAFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG VQ +LE+L IPYT SG+LASAL+MDK+ +K++++  G+PV     +     DS
Sbjct: 65  PLGEDGAVQGLLEVLGIPYTGSGVLASALAMDKIATKKILAHAGLPVPEYRELEAGDADS 124

Query: 121 Q----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
                  +  P V+K    GSS+G+ ++++++ +   +  + ++  G ++L+E+++ G E
Sbjct: 125 ARAVVAELGLPVVVKAPTQGSSIGVYIVEREEDLEARITDAVAYG-GTRVLVEKFIAGPE 183

Query: 177 LTCGVMGDAS---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           LT  V+G+     L + EI V  +  Y YE KY+   S H++P ++P ++ + V  LA  
Sbjct: 184 LTAAVLGNREPRVLPLIEI-VSATGKYDYESKYTPGLSDHLIPPRVPREVQERVSDLALR 242

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           A++A+GCRG +R D +      + F LEIN  PG+T VS+FP+ A  AG SF +L+  +V
Sbjct: 243 AYRALGCRGFARVDLIV--SGNEAFILEINTIPGLTDVSLFPDAARAAGMSFPDLVEHLV 300

Query: 294 EDA 296
             A
Sbjct: 301 RLA 303


>gi|312126949|ref|YP_003991823.1| d-alanine/d-alanine ligase [Caldicellulosiruptor hydrothermalis
           108]
 gi|311776968|gb|ADQ06454.1| D-alanine/D-alanine ligase [Caldicellulosiruptor hydrothermalis
           108]
          Length = 364

 Score =  336 bits (862), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 97/345 (28%), Positives = 173/345 (50%), Gaps = 51/345 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +AVL GG+S+E E+S+ S K+    ++   +++  I + +    +L   K          
Sbjct: 6   VAVLFGGVSTEHEISIVSAKSIMQNMDKEKYEIIPIGITKEGKWLLYTGKIEDLDSKWTQ 65

Query: 52  -----------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
                                        D+ F VLHG  GEDG VQ +LEL  IPY   
Sbjct: 66  FSIECFVSPDRTKKALVKIKDNEATFIDIDVVFPVLHGLNGEDGTVQGLLELSNIPYVGC 125

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPL 133
           G+L+SA+ MDK  +K++    G+P    ++V +    +         +   S P  +KP 
Sbjct: 126 GVLSSAICMDKAFAKKLALLEGIPQGHFLVVYKNEYSAKKDYFIRRIESEFSYPVFVKPA 185

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
             GSS+GI   K  + +   L    ++ +  ++LIEQ ++  E+ C V+G+  + V+E  
Sbjct: 186 NSGSSVGISKAKDREDL--ALAIHEAFLYDTKILIEQAINAREIECAVLGNDDVFVSEPG 243

Query: 194 --VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
             +P  +FYSYE KY   +S  ++PA++P ++ +E++ LA   ++   C G++R DF  D
Sbjct: 244 EIIPSREFYSYEAKYIDNSSELIIPARLPKEVIEEIKDLAARIYKIFECCGMARVDFFVD 303

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             + KV++ E+N  PG T +S++P++  ++G  + +L+  ++  A
Sbjct: 304 KDTNKVYFNEVNTIPGFTSISMYPKLMEFSGIPYSQLIDKLISLA 348


>gi|281418964|ref|ZP_06249982.1| D-alanine/D-alanine ligase [Clostridium thermocellum JW20]
 gi|281407421|gb|EFB37681.1| D-alanine/D-alanine ligase [Clostridium thermocellum JW20]
          Length = 376

 Score =  336 bits (862), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 93/357 (26%), Positives = 158/357 (44%), Gaps = 65/357 (18%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV----------------- 45
           V+ GG SSE EVS  S  +    +    F VS I + +    +                 
Sbjct: 9   VIFGGQSSEHEVSRISATSILKNINLDKFDVSMIGITKDGKWLYYDGPIDKIPSGEWEEI 68

Query: 46  -----------------------------------LAHLKPDLAFNVLHGNFGEDGLVQA 70
                                                  K D+ F VLHG  GEDG +Q 
Sbjct: 69  ALKDGTRSIADRVSLFDNIISCKNNACGLEKASENEKSKKIDVVFPVLHGCNGEDGTIQG 128

Query: 71  ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQ 121
           + EL  IPY   G+LASA+ MDK+ +K +    G+P    +   R  +           +
Sbjct: 129 LFELAGIPYVGCGVLASAVGMDKIYAKIIFEKAGIPQADYLYFTRKEIYGDVEGVVDKIE 188

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
              S P  +KP   GSS+G+        +   L+ ++   +  ++LIE++++G E+ C V
Sbjct: 189 EKFSYPVFVKPSNAGSSVGVSKAHDKNELKEALIYAA--RYDRKVLIEEFINGREVECAV 246

Query: 182 MGDASLDVTEIA--VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
           +G+ +   + +   +P ++FY Y+ KY    S   +PA +P +  ++++  A  A +A+ 
Sbjct: 247 LGNDAPVASTVGEIIPGNEFYDYKAKYIDNTSKIKIPADLPEETVEQIRNYAVKAFKALD 306

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           C G++R DF     + KV+  EIN  PG T +S++P +   +G S+ EL+  +++ A
Sbjct: 307 CSGLARVDFFVHKETGKVYINEINTMPGFTSISMYPMLWEESGISYPELIEKLIDLA 363


>gi|307824834|ref|ZP_07655057.1| D-alanine/D-alanine ligase [Methylobacter tundripaludum SV96]
 gi|307734192|gb|EFO05046.1| D-alanine/D-alanine ligase [Methylobacter tundripaludum SV96]
          Length = 310

 Score =  336 bits (862), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 104/298 (34%), Positives = 159/298 (53%), Gaps = 6/298 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AV+MGG ++EREVSL SG A   AL+  G     IDV  S    LA  K D  FN++HG
Sbjct: 15  VAVMMGGSAAEREVSLRSGAAVYEALKRKGVDAIAIDVTGSPIEALAGQKFDRVFNIIHG 74

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-ILVNRFTMD 119
             GEDG++Q +LE+L+IPYT SG++ASAL+MDK+R+K      G+      +L++   +D
Sbjct: 75  RGGEDGVLQGVLEVLDIPYTGSGVMASALTMDKLRTKLCWQGYGLVTPKWCLLIDESDLD 134

Query: 120 -SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                +  P ++KP + GSS+G+        +   L  ++ +     +  E +V G E T
Sbjct: 135 GCIEKLGFPVIVKPAQEGSSIGMSKASNRDELLAALSVAAKYRCD--VYAEAWVTGKEYT 192

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             V+   +L V  +  P + FY YE KY +  + +  P  +  D    ++ LA  A + +
Sbjct: 193 VAVLDGEALPVIRLETPNT-FYDYEAKYQATTTQYHCPCGLSQDQELFIRDLAVTACKVV 251

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           G +G  R D   D L  +   +E+N  PGMT  S+ P  A  AG  F EL+  ++E +
Sbjct: 252 GVKGWGRVDVFIDDL-GQYQLIEVNTVPGMTDHSLVPMAARQAGMDFEELVWRILETS 308


>gi|237799293|ref|ZP_04587754.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. oryzae str.
           1_6]
 gi|331022149|gb|EGI02206.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. oryzae str.
           1_6]
          Length = 319

 Score =  336 bits (862), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 114/302 (37%), Positives = 165/302 (54%), Gaps = 6/302 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL+SG A   AL DAG     IDV       L   K D AF VLHG
Sbjct: 21  VAVLFGGKSAEREVSLNSGNAVLKALLDAGVDAFGIDVGDDFLHRLVSEKIDRAFIVLHG 80

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--M 118
             GEDG +Q +LE LEIPYT SG+LASAL+MDK+R+KQV  S G+P     ++      +
Sbjct: 81  RGGEDGTMQGLLECLEIPYTGSGVLASALAMDKLRTKQVWQSLGLPTPLHAVLENENDCI 140

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   +  P ++KP   GSS+G+  +     +      +S   +  Q+L+EQ++ G E T
Sbjct: 141 CAATELGFPLIVKPAHEGSSIGMAKVNSVDELIAAWKAAS--TYDSQVLVEQWIQGPEFT 198

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +    L    +  P S FY Y+ KY + ++ + +P  +     + ++ LA  A  AI
Sbjct: 199 VASLRGQVLPPIGLGTPHS-FYDYDAKYLASDTQYRIPCGLGDVQEQALKELAARACDAI 257

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           G  G +R+D + D    K + LE+N  PGMT  S+ P  A  AG  F++L+L ++ D+  
Sbjct: 258 GIAGWARTDVMQDAQ-GKFWLLEVNTVPGMTDHSLVPMAARAAGLDFQQLVLAILADSVQ 316

Query: 299 LR 300
            R
Sbjct: 317 AR 318


>gi|330811577|ref|YP_004356039.1| D-alanine--D-alanine ligase B [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327379685|gb|AEA71035.1| D-alanine--D-alanine ligase B [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 321

 Score =  335 bits (861), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 109/295 (36%), Positives = 162/295 (54%), Gaps = 6/295 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL SG A   AL+ AG     IDV       L   K D AF +LHG
Sbjct: 20  VAVLFGGKSAEREVSLKSGNAVLQALQSAGVDAFGIDVGDDFLQRLLSEKIDRAFIILHG 79

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTM 118
             GEDG +Q +LE L IPYT SGILASAL+MDK+R+KQV  S G+P     ++      +
Sbjct: 80  RGGEDGSMQGLLECLGIPYTGSGILASALAMDKLRTKQVWHSLGIPTPRHAVLASEADCI 139

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   +  P ++KP   GSS+G+  +     +      +SS  +  Q+L+EQ++ G E T
Sbjct: 140 SAATELGFPLIVKPAHEGSSIGMAKVNSLPELTAAWKDASS--YDSQVLVEQWITGPEFT 197

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              + D  L    +  P + FY Y+ KY + ++ + +P  +     KE+  L   A +A+
Sbjct: 198 IATLRDQVLPPIALGTPHT-FYDYDAKYVANDTQYRIPCGLDAAKEKELMDLTAKACEAL 256

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           G  G  R+D + D    + ++LE+N  PGMT  S+ P  A  AG  F++L++ ++
Sbjct: 257 GIAGWGRADVMQDA-DGQFWFLEVNTAPGMTDHSLVPMAARAAGLDFQQLVVSIL 310


>gi|320335437|ref|YP_004172148.1| D-alanine--D-alanine ligase [Deinococcus maricopensis DSM 21211]
 gi|319756726|gb|ADV68483.1| D-alanine--D-alanine ligase [Deinococcus maricopensis DSM 21211]
          Length = 343

 Score =  335 bits (861), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 104/337 (30%), Positives = 173/337 (51%), Gaps = 39/337 (11%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI------------DVDRSVGLVLAH 48
           + +L GG S E EVSLSS +   +AL    F+V+ +            D  R++   +A 
Sbjct: 9   ILLLAGGQSGEHEVSLSSARGVLAALPKDRFEVTPLVISKEGRWLPPADTTRALEAGVAE 68

Query: 49  LK-------------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
                           D+ F +LHG  GEDG VQ +L L  IP+  SG+L SA SMDK  
Sbjct: 69  TGGDLMLRGVADAASFDVVFPLLHGPNGEDGTVQGLLTLAGIPFVGSGVLGSAASMDKAM 128

Query: 96  SKQVVSSCGVPVCPSILVNRFT--------MDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147
           +KQV+++ G+P  P  L+ R          + +   +  P  +KP   GSS+GI  ++ +
Sbjct: 129 TKQVLAAHGIPQVPWRLLTRAQVRRDPAAALTAARELGFPLFVKPANMGSSVGISKVRGE 188

Query: 148 QSIPLDLLQSSSWNHGDQLLIEQYVDG--IELTCGVMGDASLDVTEIAVP--KSDFYSYE 203
             +  D     ++ H  ++++E    G   EL  G++G+ +   + +      +DFY YE
Sbjct: 189 DEL--DGALREAFAHDRRVVLEAMTQGKPRELEVGILGNDAPMASPVGELRFDADFYDYE 246

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            KY+   +T  +PA +P  + ++V+  A  A +A+ C G++R DF ++  + +V+  E+N
Sbjct: 247 TKYTEGRATMHIPADVPHAVAEQVRTYALAAFRALDCAGLARIDFFYEAATGQVYLNEVN 306

Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
             PG TP S++P + A AG S+ +L+  +VE A+  R
Sbjct: 307 TMPGFTPTSMYPNLWAAAGLSYADLVTRLVELATEDR 343


>gi|153875644|ref|ZP_02003354.1| D-alanine--D-alanine ligase [Beggiatoa sp. PS]
 gi|152067892|gb|EDN66646.1| D-alanine--D-alanine ligase [Beggiatoa sp. PS]
          Length = 290

 Score =  335 bits (861), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 108/294 (36%), Positives = 163/294 (55%), Gaps = 6/294 (2%)

Query: 5   MGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGE 64
           MGG S+EREVSL SG+A  +AL         ID   ++   L     D AF  LHG  GE
Sbjct: 1   MGGHSAEREVSLKSGQAILAALLRQSVDAVGIDTAHNLVTQLTENSFDRAFIALHGRGGE 60

Query: 65  DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTMDSQH 122
           DG +Q +LEL+ IPYT SG+LA AL+MDK R+KQ+    G+P   S+LV  +        
Sbjct: 61  DGTIQGLLELMGIPYTGSGVLACALAMDKYRTKQLWQGIGLPTPASVLVQTDSDFNSIIE 120

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            +  P ++KP   GSS+GI  +K    +   +  +S ++    ++ E Y+ G E T  ++
Sbjct: 121 KLGLPLMVKPSLEGSSVGITKVKNVDELASAVETASQFHCD--IIAEHYISGTEYTAAIL 178

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D +L +  +  P+ +FY +  KY+   ++++ P  +P    +E+Q +A  A  ++G +G
Sbjct: 179 HDTALPLIRLETPR-EFYDFTAKYNDNQTSYICPCGLPEKQERELQEMAMQAFLSLGAKG 237

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             R DFL D  S K + +EIN+ PGMT  S+ P  A  AG SF EL+L ++  A
Sbjct: 238 WGRVDFLCDETS-KPWLIEINIIPGMTDHSLVPMAAKQAGISFDELVLRILSQA 290


>gi|156741078|ref|YP_001431207.1| D-alanine--D-alanine ligase [Roseiflexus castenholzii DSM 13941]
 gi|156232406|gb|ABU57189.1| D-alanine--D-alanine ligase [Roseiflexus castenholzii DSM 13941]
          Length = 371

 Score =  335 bits (861), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 105/361 (29%), Positives = 171/361 (47%), Gaps = 63/361 (17%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---------LAHLKP 51
           + VL GG S E EVSL S +A    L+   + V+ I + +    +         LA   P
Sbjct: 7   VGVLFGGQSGEHEVSLVSARAVMDGLDPERYDVTPIGITKHGRWIIAPDAHTRLLAQADP 66

Query: 52  -----------------------------------------DLAFNVLHGNFGEDGLVQA 70
                                                    D+ F VLHG  GEDG VQ 
Sbjct: 67  AKLPGGSSAGAADAADGVDDVETTDPLTLMVAGEQSPLKTLDVVFPVLHGPMGEDGTVQG 126

Query: 71  ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ--------- 121
           +LEL+EIPY   G++ASA+ MDK  +K   S  G+PV P +L+ R   + +         
Sbjct: 127 LLELMEIPYVGCGVMASAVGMDKAMTKVAFSGAGLPVLPWLLIRRREWEREPAHVLDWVE 186

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
             ++ P  +KP   GSS+GI  +    ++   + ++++++   ++++EQ +   E+   +
Sbjct: 187 QRLTYPMFVKPANLGSSVGISKVTGRAALARGIAEAAAYDR--RIVVEQGIPAREIEVSI 244

Query: 182 MGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
           +G+   + +     VP  ++Y YE KY S  S  ++PA I L++   V+RLA  A +AI 
Sbjct: 245 LGNNEPEASVPGEVVPSGEWYDYEAKYLSGASKILIPAPITLELAARVRRLAVQAFKAID 304

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
             G++R DFL +  +  ++  EIN  PG TPVS++  M   +G  + +LL  ++E A   
Sbjct: 305 GAGLARVDFLLNRETGDLYLNEINTMPGFTPVSMYAMMWEASGLPYTQLLDRLIELALER 364

Query: 300 R 300
           R
Sbjct: 365 R 365


>gi|116751515|ref|YP_848202.1| D-alanine--D-alanine ligase [Syntrophobacter fumaroxidans MPOB]
 gi|189083063|sp|A0LQR5|DDL_SYNFM RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|116700579|gb|ABK19767.1| D-alanine--D-alanine ligase [Syntrophobacter fumaroxidans MPOB]
          Length = 311

 Score =  335 bits (861), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 114/305 (37%), Positives = 175/305 (57%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLA-HLKPDLAFNVLH 59
           +A+L GG S+EREVSL SG+   +AL+   + V + D    +  + A   K D+A  +LH
Sbjct: 8   VALLSGGASAEREVSLKSGEQVFNALDKQRYLVLRYDPAHDLTRLAADAEKIDVALIILH 67

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G  GEDG +Q +LE L IPY  SG+L SA++M+K+ SKQ+    G+PV P ++ +R    
Sbjct: 68  GRMGEDGTIQGLLESLGIPYQGSGVLGSAVAMNKILSKQLYIHAGLPVAPHLVADRREPP 127

Query: 120 S----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175
                   +  P V+KP   GSS+G+ +++    +   +   + W +  + LIE+YV GI
Sbjct: 128 DLDTVADRLGLPVVVKPEHEGSSIGLSIVRNRDQLAAAV--ETGWQYDRRCLIEKYVHGI 185

Query: 176 ELTCGVMGD---ASLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           E+T GV+G+    +L + EI   ++ +F+ Y+ KY+   S  + PA++   I  + Q  A
Sbjct: 186 EITGGVLGNDHLQALPLIEIIPGEAYEFFDYKAKYTPGASREICPARLSDTITAKAQEYA 245

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             AHQA+ C+G SR+D +       +F LE N  PGMT  S+FP+ AA AG SF  LL  
Sbjct: 246 RKAHQALCCKGYSRTDMIV--SGNDIFILETNTIPGMTATSLFPQAAAVAGISFSALLDR 303

Query: 292 MVEDA 296
           ++E A
Sbjct: 304 LIELA 308


>gi|326390825|ref|ZP_08212377.1| D-alanine/D-alanine ligase [Thermoanaerobacter ethanolicus JW 200]
 gi|325993084|gb|EGD51524.1| D-alanine/D-alanine ligase [Thermoanaerobacter ethanolicus JW 200]
          Length = 359

 Score =  335 bits (861), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 100/345 (28%), Positives = 170/345 (49%), Gaps = 51/345 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           +AVL GG S E EVSL S K+  + L+   +++  I + +     L              
Sbjct: 6   IAVLFGGQSGEHEVSLMSAKSIINNLDKDKYEIYMIGIAKKGEWYLYRGDVEKIETGEWE 65

Query: 50  ----------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81
                                         D+ F VLHG  GEDG +Q +LELL+IPY  
Sbjct: 66  KEGIPATMGASTKYRGIITFEDGKNGFYPIDVVFPVLHGPNGEDGTIQGLLELLDIPYVG 125

Query: 82  SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL-------ISPPYVIKPLK 134
           + +L+SAL MDK+ +K++    G+P    ++V R  ++           +  P  +KP  
Sbjct: 126 ANVLSSALCMDKVFTKRIFKEAGLPTPDFVVVYRKEIEDLEAIKKKVEHLGYPCFVKPAN 185

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--DVTEI 192
            GSS+GI  +  ++ +P  L  ++   +  +LLIE+ +D  E+ C V+G+ +    +   
Sbjct: 186 LGSSVGITKVHNEEELPGALKLAA--KYDRKLLIERGIDAREIECSVLGNENPQASIAGE 243

Query: 193 AVPKSDFYSYELKYSSLN-STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
            VP ++FY Y  KY     S  ++PA +P +  +EV++LA  A++A+  RG++R DFL D
Sbjct: 244 IVPSNEFYDYNAKYFDGGKSLLLIPAPLPDEKMEEVRQLAIKAYKALDLRGMARVDFLMD 303

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             +  ++  E+N  PG T +S++P++   +G  +  LL  ++  A
Sbjct: 304 RNTGTLYLNEVNTIPGFTKISMYPKLWEVSGKPYSILLDELINLA 348


>gi|163782057|ref|ZP_02177056.1| D-alanine:D-alanine ligase [Hydrogenivirga sp. 128-5-R1-1]
 gi|159882589|gb|EDP76094.1| D-alanine:D-alanine ligase [Hydrogenivirga sp. 128-5-R1-1]
          Length = 288

 Score =  335 bits (861), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 101/293 (34%), Positives = 169/293 (57%), Gaps = 8/293 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VLMGG SSERE+SL +G+A + AL+D G +V ++D+   +   L  +KPD  F  LHG
Sbjct: 3   IVVLMGGKSSEREISLKTGRAVSRALKDMGHEVHELDLTPEIACELLRIKPDKVFIALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG +Q +L++L IPYT +G+L SA++MDK  +K+++SS G+P  P   V R     
Sbjct: 63  PYGEDGRIQGLLDILGIPYTGAGVLGSAVAMDKEITKRLLSSEGIPTPPWRCVRRGEEPV 122

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
                 P V+KP   GSS+G+ V+  +  +   + +   +   D++L+E +++G ++T  
Sbjct: 123 WR--DFPAVVKPADQGSSVGLSVVHSEAELGKAVKE--LFELTDKVLVESFIEGRDMTVA 178

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           ++   +L V EI   K   Y YE KY+   + +    +   ++ + +Q  A   ++ +G 
Sbjct: 179 ILKGKALPVIEIKPIK-GIYDYESKYTRGKTEYTFLEE--GELSERLQDTALRVNELLGL 235

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           + ++R DF  D      + LE+N  PGMT +S+FP     AG SF+E+L  ++
Sbjct: 236 KDMARVDFRVDGEGN-PYVLEVNTVPGMTELSLFPMACEKAGMSFKEMLSIIL 287


>gi|255320029|ref|ZP_05361225.1| D-alanine--D-alanine ligase B [Acinetobacter radioresistens SK82]
 gi|255302897|gb|EET82118.1| D-alanine--D-alanine ligase B [Acinetobacter radioresistens SK82]
          Length = 311

 Score =  335 bits (861), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 105/298 (35%), Positives = 164/298 (55%), Gaps = 8/298 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL SG+A   AL  +G +    D        L  +  D AF VLHG
Sbjct: 10  VAVLLGGKSAEREVSLDSGRAVLEALIRSGVEAEAFDPQERCVTEL--VNYDRAFIVLHG 67

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LE L IPYT +G+  SA+ MDK+++KQV     +P  P  +V++     
Sbjct: 68  RGGEDGQIQGVLEWLNIPYTGTGVQGSAIGMDKIKTKQVWQGSELPTAPHRIVSKDADAD 127

Query: 121 Q--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           +    +  P++IKP+  GSS+G+  ++K +     L +++   H   ++ E++++G E T
Sbjct: 128 EVIASLGLPFIIKPVHEGSSIGMSKVEKPEDFAEALAKAT--EHDAVVMAEKWINGREFT 185

Query: 179 CGVMGDASLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
             ++   +L V  +  PK   FY YE KY+  +  + +P  +     K +Q LA  A QA
Sbjct: 186 IVLLNGQALPVIRLEPPKDVAFYDYEAKYNRNDVQYGIPCGLSEAEEKTLQELALRAFQA 245

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           +GC+G  R D + D      + LE+N  PGMT  S+ P+ A   GY F +L + ++E 
Sbjct: 246 VGCKGWGRIDAMQDEQGN-FWLLEVNTVPGMTSHSLVPKAAKAVGYDFDQLCVTILEQ 302


>gi|256005208|ref|ZP_05430176.1| D-alanine/D-alanine ligase [Clostridium thermocellum DSM 2360]
 gi|255990862|gb|EEU00976.1| D-alanine/D-alanine ligase [Clostridium thermocellum DSM 2360]
 gi|316941575|gb|ADU75609.1| D-alanine/D-alanine ligase [Clostridium thermocellum DSM 1313]
          Length = 376

 Score =  335 bits (860), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 93/357 (26%), Positives = 157/357 (43%), Gaps = 65/357 (18%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV----------------- 45
           V+ GG SSE EVS  S  +    +    F VS I + +    +                 
Sbjct: 9   VIFGGQSSEHEVSRISATSILKNINLDKFDVSMIGITKDGKWLYYDGPIDKIPSGEWEEI 68

Query: 46  -----------------------------------LAHLKPDLAFNVLHGNFGEDGLVQA 70
                                                  K D+ F VLHG  GEDG +Q 
Sbjct: 69  ALKDGTRSIADRVSLFDNIISCKNNACGLEKASENEKSKKIDVVFPVLHGCNGEDGTIQG 128

Query: 71  ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQ 121
           + EL  IPY   G+LASA+ MDK+ +K +    G+P    +   R  +           +
Sbjct: 129 LFELAGIPYVGCGVLASAVGMDKIYAKIIFEKAGIPQADYLYFTRKEIYGDVEGVVDKIE 188

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
              S P  +KP   GSS+G+        +   L+ ++   +  ++LIE++++G E+ C V
Sbjct: 189 EKFSYPVFVKPSNAGSSVGVSKAHDKNELKEALIYAA--RYDRKVLIEEFINGREVECAV 246

Query: 182 MGDASLDVTEIA--VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
           +G+     + +   +P ++FY Y+ KY    S   +PA +P +  ++++  A  A +A+ 
Sbjct: 247 LGNDDPVASTVGEIIPGNEFYDYKAKYIDNTSKIKIPADLPEETVEQIRNYAVKAFKALD 306

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           C G++R DF     + KV+  EIN  PG T +S++P +   +G S+ EL+  +++ A
Sbjct: 307 CSGLARVDFFVHKETGKVYINEINTMPGFTSISMYPMLWEESGISYPELIEKLIDLA 363


>gi|167036618|ref|YP_001664196.1| D-alanyl-alanine synthetase A [Thermoanaerobacter pseudethanolicus
           ATCC 33223]
 gi|167039269|ref|YP_001662254.1| D-alanyl-alanine synthetase A [Thermoanaerobacter sp. X514]
 gi|300913909|ref|ZP_07131226.1| D-alanine/D-alanine ligase [Thermoanaerobacter sp. X561]
 gi|307725406|ref|YP_003905157.1| D-alanine/D-alanine ligase [Thermoanaerobacter sp. X513]
 gi|320115045|ref|YP_004185204.1| D-alanine/D-alanine ligase [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
 gi|190359215|sp|B0KBI1|DDL_THEP3 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|190359216|sp|B0K485|DDL_THEPX RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|166853509|gb|ABY91918.1| D-alanine--D-alanine ligase [Thermoanaerobacter sp. X514]
 gi|166855452|gb|ABY93860.1| D-alanine--D-alanine ligase [Thermoanaerobacter pseudethanolicus
           ATCC 33223]
 gi|300890594|gb|EFK85739.1| D-alanine/D-alanine ligase [Thermoanaerobacter sp. X561]
 gi|307582467|gb|ADN55866.1| D-alanine/D-alanine ligase [Thermoanaerobacter sp. X513]
 gi|319928136|gb|ADV78821.1| D-alanine/D-alanine ligase [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
          Length = 359

 Score =  335 bits (860), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 98/345 (28%), Positives = 171/345 (49%), Gaps = 51/345 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           +AVL GG S E EVSL S K+  + L+   +++  + + +     L              
Sbjct: 6   IAVLFGGQSGEHEVSLMSAKSIINNLDKDKYEIYMVGITKKGEWYLYRGDVGKIETGEWE 65

Query: 50  ----------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81
                                         D+ F VLHG  GEDG +Q +LELL++PY  
Sbjct: 66  KEGIPAIMGASTKYRGIITFEDGENGFYPIDVVFPVLHGPNGEDGTIQGLLELLDMPYVG 125

Query: 82  SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL-------ISPPYVIKPLK 134
           + +L+SAL MDK+ +K++    G+P    ++V    ++           +  P  +KP  
Sbjct: 126 ANVLSSALCMDKVFTKRIFKEAGLPTPDFVVVYGKEIEDLEAIKKKIEHLGYPCFVKPAN 185

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT--EI 192
            GSS+GI  +  ++ +P  L  ++   +  +LLIE+ +D  E+ C V+G+ + + +    
Sbjct: 186 LGSSVGITKVHNEEELPGALKLAA--KYDRKLLIERGIDAREIECSVLGNENPEASIAGE 243

Query: 193 AVPKSDFYSYELKYSSLN-STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
            VP ++FY Y  KY     S  ++PA +P +  +EV++LA  A++A+  RG++R DFL D
Sbjct: 244 IVPSNEFYDYNAKYFDGGKSLLLIPAPLPDEKMEEVRKLAIKAYKALDLRGMARVDFLMD 303

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             +  ++  E+N  PG T +S++P++   +G S+  LL  ++  A
Sbjct: 304 RNTGTLYLNEVNTIPGFTKISMYPKLWESSGKSYSTLLDELINLA 348


>gi|125974439|ref|YP_001038349.1| D-alanine--D-alanine ligase [Clostridium thermocellum ATCC 27405]
 gi|190359126|sp|A3DGS7|DDL_CLOTH RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|125714664|gb|ABN53156.1| D-alanine--D-alanine ligase [Clostridium thermocellum ATCC 27405]
          Length = 376

 Score =  335 bits (860), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 93/357 (26%), Positives = 157/357 (43%), Gaps = 65/357 (18%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV----------------- 45
           V+ GG SSE EVS  S  +    +    F VS I + +    +                 
Sbjct: 9   VIFGGQSSEHEVSRISATSILKNINLDKFDVSMIGITKDGKWLYYDGPIDKIPSGEWEEI 68

Query: 46  -----------------------------------LAHLKPDLAFNVLHGNFGEDGLVQA 70
                                                  K D+ F VLHG  GEDG +Q 
Sbjct: 69  ALKDGTRSIADRVSLFDNIISCKNNACGLEKASENEKSKKIDVVFPVLHGCNGEDGTIQG 128

Query: 71  ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQ 121
           + EL  IPY   G+LASA+ MDK+ +K +    G+P    +   R  +           +
Sbjct: 129 LFELAGIPYVGCGVLASAVGMDKIYAKIIFEKAGIPQADYLYFTRKEIYGDVEGVVDKIE 188

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
              S P  +KP   GSS+G+        +   L+ ++   +  ++LIE++++G E+ C V
Sbjct: 189 EKFSYPVFVKPSNAGSSVGVSKAHDKNELKEALIYAA--RYDRKVLIEEFINGREVECAV 246

Query: 182 MGDASLDVTEIA--VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
           +G+     + +   +P ++FY Y+ KY    S   +PA +P +  ++++  A  A +A+ 
Sbjct: 247 LGNDDPVASTVGEIIPGNEFYDYKAKYIENTSKIKIPADLPEETVEQIRNYAVKAFKALD 306

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           C G++R DF     + KV+  EIN  PG T +S++P +   +G S+ EL+  +++ A
Sbjct: 307 CSGLARVDFFVHKETGKVYINEINTMPGFTSISMYPMLWEESGISYPELIEKLIDLA 363


>gi|257092206|ref|YP_003165847.1| D-alanine--D-alanine ligase [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
 gi|257044730|gb|ACV33918.1| D-alanine/D-alanine ligase [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
          Length = 308

 Score =  335 bits (860), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 105/303 (34%), Positives = 164/303 (54%), Gaps = 11/303 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL+SG    +AL   G      D        LA      AF  LHG
Sbjct: 9   VAVLFGGRSAEREVSLNSGSRVLAALRRQGVDAHAFDPAERQLDDLA--GFARAFIALHG 66

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--M 118
            +GEDG +Q  LEL+ IPYT SG++ASAL MDK R+K +  + G+PV P ++++  T   
Sbjct: 67  RYGEDGTIQGALELMGIPYTGSGVMASALGMDKWRTKLLWQAAGLPVPPYLMLDDATDLA 126

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
             +  +  P  +KP   GSS+GI  +K+   +     ++ +  H   ++ E+ + G E T
Sbjct: 127 AVEAALGLPLFVKPACEGSSIGITKVKRPGELAA--ARAEAARHDSLVIAERAILGGEYT 184

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             ++G+A+L + +I  P ++FY YE KY   ++ +  P  +      E+++ A  A + +
Sbjct: 185 VAILGNAALPIIKIE-PSNEFYDYEAKYLRDDTAYRCPCGLTETRESELRQQALDAFRVL 243

Query: 239 GCRGISRSDFLFDP----LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           G RG  R DFL D          ++LE+N  PGMT  S+ P  A  AG S+ +L++ ++ 
Sbjct: 244 GGRGWGRVDFLLDQAAAAGGGAAYFLEVNTSPGMTDHSLVPMAARAAGMSYDDLVVRILA 303

Query: 295 DAS 297
            A+
Sbjct: 304 LAT 306


>gi|239825776|ref|YP_002948400.1| D-alanyl-alanine synthetase A [Geobacillus sp. WCH70]
 gi|239806069|gb|ACS23134.1| D-alanine/D-alanine ligase [Geobacillus sp. WCH70]
          Length = 364

 Score =  335 bits (860), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 92/347 (26%), Positives = 158/347 (45%), Gaps = 54/347 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           + +L GG S E  VSLS+  A  +A++   F V  I +      +               
Sbjct: 5   VGILYGGKSPEHNVSLSTAMAVMNAIDKNKFDVIPIYITTEGQWIKGERLTGKVNDIKQL 64

Query: 47  --------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYT 80
                                          D+ F +LHG  GEDG VQ +LELL IPY 
Sbjct: 65  QFQSDAKAIIPVALNQTPAVADGKKQEEAVVDVIFPLLHGPNGEDGTVQGLLELLNIPYV 124

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIK 131
            +G+LASA+ MDK+  K + +  G+     +   +              +  +  P  +K
Sbjct: 125 GNGVLASAVGMDKVVMKNLFAQAGLRQAKYVSFTKREWSRNEEAAYDKVEQELGYPCFVK 184

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--DV 189
           P   GSS+GI   K+   +      + ++ +  ++++E+ + G E+  GV+G+      V
Sbjct: 185 PANAGSSVGITKCKQRDDLKAAF--AEAFKYDRKIIVEEAIVGREIEIGVIGNDDPICSV 242

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
               VPK +FY Y+ KY   N+  ++PA +  + Y+ ++++A  A +A+   G+ R+DF 
Sbjct: 243 VGEIVPKKEFYDYQAKYEDGNTELIIPADVTKEQYETIKQMAITAFKALDLSGLVRADFF 302

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                 + +  EIN  PG TP S+FP +  ++G S+ EL+  +++ A
Sbjct: 303 LTE-DGEAYINEINTMPGFTPYSMFPLLWKHSGVSYPELIERLIQLA 348


>gi|325295149|ref|YP_004281663.1| D-alanine--D-alanine ligase [Desulfurobacterium thermolithotrophum
           DSM 11699]
 gi|325065597|gb|ADY73604.1| D-alanine--D-alanine ligase [Desulfurobacterium thermolithotrophum
           DSM 11699]
          Length = 291

 Score =  335 bits (859), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 94/295 (31%), Positives = 163/295 (55%), Gaps = 6/295 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AV+ GG S E E+S  S K+   AL+  G +V ++++D ++   L   KPD  F  LHG
Sbjct: 3   VAVIYGGPSPEAEISRKSAKSVIFALKKLGHQVFELELDENITEKLKQQKPDKVFITLHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
           + GEDG VQ +LE+    YT      SA+ MDK  +K+V+ +  +PV        F  D 
Sbjct: 63  SPGEDGTVQGLLEIAGYNYTGCNTQTSAICMDKDITKRVLKTYNIPVPAGETF--FQGDK 120

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P V+KP + GS++GI V+K + S    +    ++ +  +++IE+Y++G E+T  
Sbjct: 121 IEPVEIPCVVKPARTGSTVGISVVKDENSFQKAV--EEAFKYDSKIIIEEYIEGREITVA 178

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V+   +L   EI V ++ FY ++ KY    + + +PA + L + +++++++    + + C
Sbjct: 179 VLNGFALPPVEI-VTETGFYDFDSKYKKQTTEYKVPANLNLKLQEKLKKISEKIFKVLEC 237

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           +G  R DF  D  +   + LE+N  PGMT  S+ P+ A  AG  F +L+  ++E 
Sbjct: 238 KGAIRIDFRIDKWNN-PYVLEVNTIPGMTERSLLPKAANAAGIPFEKLIEEILES 291


>gi|326402238|ref|YP_004282319.1| D-alanine--D-alanine ligase [Acidiphilium multivorum AIU301]
 gi|325049099|dbj|BAJ79437.1| D-alanine--D-alanine ligase [Acidiphilium multivorum AIU301]
          Length = 301

 Score =  335 bits (859), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 133/301 (44%), Positives = 192/301 (63%), Gaps = 6/301 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL--KPDLAFNVL 58
           +AVL+GGIS EREVSL+SG+  A+AL  AG+ V +I+V   +G V+A L   PD  FN L
Sbjct: 4   VAVLLGGISEEREVSLASGRQVAAALRKAGYDVFEIEVGADLGAVIAALTPAPDAVFNAL 63

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
           HG FGEDG +Q +L+ + IPYTHSG+ AS+++MDK  +K V +S G+P+    +V    +
Sbjct: 64  HGRFGEDGTIQGVLDYMGIPYTHSGVRASSMAMDKGAAKAVFASAGLPLAQHRIVPLDEL 123

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                +  PYVIKP+  GSS+G+ ++++  +   D+  + +W HG   + E+YV G ELT
Sbjct: 124 AEADPLPRPYVIKPVNEGSSVGVFILREGDNRRADI--ARAWRHGSVAMTEEYVPGRELT 181

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             V+ D +L VTEI      FY Y  KY++  S H +PA +P  +    + +A  AH+A+
Sbjct: 182 VSVLEDRALAVTEIRA--EGFYDYTAKYAAGASRHEIPADVPPSVSARARDVAVAAHRAL 239

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           GCRG +RSDF +D  + ++  LE+N QPGMTP S+ PE AA+ G  F  L  WMVE+A+C
Sbjct: 240 GCRGATRSDFRYDDETDRLVLLEVNTQPGMTPTSLLPEQAAHCGIDFPALCAWMVENAAC 299

Query: 299 L 299
            
Sbjct: 300 R 300


>gi|313106940|ref|ZP_07793143.1| D-alanine--D-alanine ligase [Pseudomonas aeruginosa 39016]
 gi|310879645|gb|EFQ38239.1| D-alanine--D-alanine ligase [Pseudomonas aeruginosa 39016]
          Length = 319

 Score =  335 bits (859), Expect = 6e-90,   Method: Composition-based stats.
 Identities = 105/302 (34%), Positives = 162/302 (53%), Gaps = 6/302 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL SG     +L  AG     IDV   +   L   K D AF +LHG
Sbjct: 21  VAVLFGGKSAEREVSLKSGAMVLQSLLAAGVDAFGIDVGEDLLQRLVEEKIDRAFIILHG 80

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118
             GEDG +Q +LE   IPYT SG+LASAL+MDK+R+K+V  S G+P     ++       
Sbjct: 81  RGGEDGSMQGLLECAGIPYTGSGVLASALAMDKLRTKRVWLSLGLPTPDYAVLASEDDCR 140

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           D+   +  P ++KP   GSS+G+  +     +     +++   +  Q+L+EQ++ G E T
Sbjct: 141 DAAQRLGFPLIVKPAHEGSSIGMAKVGGLDELIAAWREAA--RYDSQVLVEQWISGPEFT 198

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +    L    +  P + FY Y+ KY + ++ + +P  +     +E++ L   A  A+
Sbjct: 199 VATLRGQVLPAIRLGTPHT-FYDYDAKYLASDTRYQVPCGLDEAKERELKELTARACDAL 257

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           G +G  R+D + D   R  + LE+N  PGMT  S+ P  A  AG  F++L+L ++ D+  
Sbjct: 258 GIQGWGRADVMQDAEGR-FWLLEVNTAPGMTDHSLVPMAARAAGLDFQQLVLAILADSRE 316

Query: 299 LR 300
            R
Sbjct: 317 AR 318


>gi|83648520|ref|YP_436955.1| D-alanine-D-alanine ligase-like protein [Hahella chejuensis KCTC
           2396]
 gi|83636563|gb|ABC32530.1| D-alanine-D-alanine ligase and related ATP-grasp enzyme [Hahella
           chejuensis KCTC 2396]
          Length = 315

 Score =  335 bits (859), Expect = 6e-90,   Method: Composition-based stats.
 Identities = 103/298 (34%), Positives = 166/298 (55%), Gaps = 11/298 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+ER+VSL SG    +AL + G     +D  R     L     D  F VLHG
Sbjct: 20  VAVLFGGASAERDVSLKSGGQVLAALRNVGVDCFHVDP-RDGLQPLLDGDFDRVFIVLHG 78

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +L LL  PYT S +LASAL+MDK+R+KQ+  + G+P     +++  + D 
Sbjct: 79  RGGEDGTMQGLLTLLNKPYTGSDVLASALAMDKLRTKQLWETMGIPTPKYAVLDAGS-DW 137

Query: 121 QHLI-----SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175
           + ++       P ++KP+  GSS+G+  +   + +    L+++ +     ++ EQ++ G 
Sbjct: 138 EAIVTEVGAGQPLMVKPVHEGSSIGMRRVVTAEELEAAYLEAAKF--DSVVIAEQWITGA 195

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
           E T  ++G+ +L   ++      FY YE KY   ++ ++LP  +P D   E++ LA  A+
Sbjct: 196 EYTVSILGEDALPAIKLET-DRQFYDYEAKYVVNDTRYILPCGLPQDKEDELKTLALRAY 254

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +AIGC G  R D + D    + + LE+N  PGMT  S+ P  A  +G SF +L+L ++
Sbjct: 255 RAIGCSGWGRVDIMCDAA-GQPWLLEVNTVPGMTDHSLVPMAAKASGLSFEQLVLSIL 311


>gi|302185267|ref|ZP_07261940.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. syringae 642]
          Length = 319

 Score =  335 bits (859), Expect = 6e-90,   Method: Composition-based stats.
 Identities = 114/302 (37%), Positives = 168/302 (55%), Gaps = 6/302 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL+SG A   AL DAG     IDV       L   K D AF VLHG
Sbjct: 21  VAVLFGGKSAEREVSLNSGNAVLKALLDAGVDAFGIDVGDDFLQRLVSEKIDRAFIVLHG 80

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--M 118
             GEDG +Q +LE LEIPYT SG+LASAL+MDK+R+KQV  S G+      ++   +  +
Sbjct: 81  RGGEDGTMQGLLECLEIPYTGSGVLASALAMDKLRTKQVWQSLGLATPLHAVIENESDCI 140

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   +  P ++KP   GSS+G+  +     +      +S   +  Q+L+EQ++ G E T
Sbjct: 141 CAATELGLPLIVKPAHEGSSIGMAKVNSVDELIAAWKAAS--TYDSQVLVEQWIQGPEFT 198

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +    L    +  P S FY Y+ KY + ++ + +P  +     +E+++LA  A +AI
Sbjct: 199 VASLRGQVLPPIGLGTPHS-FYDYDAKYLASDTQYRIPCGLGDAQEQELKQLAARACEAI 257

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           G  G +R+D + D    K + LE+N  PGMT  S+ P  A  AG  F++L+L ++ D+  
Sbjct: 258 GIAGWARTDVMQDAQ-GKFWLLEVNTVPGMTDHSLVPMAARAAGLDFQQLVLAILADSVQ 316

Query: 299 LR 300
            R
Sbjct: 317 AR 318


>gi|28871541|ref|NP_794160.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|39931109|sp|Q87WY7|DDLB_PSESM RecName: Full=D-alanine--D-alanine ligase B; AltName:
           Full=D-Ala-D-Ala ligase B; AltName: Full=D-alanylalanine
           synthetase B
 gi|28854792|gb|AAO57855.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. tomato str.
           DC3000]
          Length = 319

 Score =  335 bits (859), Expect = 6e-90,   Method: Composition-based stats.
 Identities = 113/302 (37%), Positives = 166/302 (54%), Gaps = 6/302 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL+SG A   AL DAG     IDV       L   K D AF VLHG
Sbjct: 21  VAVLFGGKSAEREVSLNSGNAVLKALLDAGVDAFGIDVGDDFLQRLVSEKIDRAFIVLHG 80

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--M 118
             GEDG +Q +LE LEIPYT SG+LASAL+MDK+R+KQV  S G       ++      +
Sbjct: 81  RGGEDGTMQGLLECLEIPYTGSGVLASALAMDKLRTKQVWQSLGPATPLHAVLENENDCI 140

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   +  P ++KP   GSS+G+  +     +      +S   +  Q+L+EQ++ G E T
Sbjct: 141 CAATELGFPLIVKPAHEGSSIGMAKVNSVDELIAAWKAAS--TYDSQVLVEQWIQGPEFT 198

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +    L    +  P S FY Y+ KY + ++ + +P  +     +++++LA  A  AI
Sbjct: 199 VASLRGQVLPPIGLGTPHS-FYDYDAKYLASDTQYRIPCGLDDAQEQQLKQLAARACDAI 257

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           G  G +R+D + D    K + LE+N  PGMT  S+ P  A  AG +F++L+L ++ D+  
Sbjct: 258 GIAGWARTDVMQDA-EGKFWLLEVNTVPGMTDHSLVPMAARAAGLNFQQLVLAILADSVQ 316

Query: 299 LR 300
            R
Sbjct: 317 AR 318


>gi|197105779|ref|YP_002131156.1| D-alanine--D-alanine ligase B [Phenylobacterium zucineum HLK1]
 gi|196479199|gb|ACG78727.1| D-alanine--D-alanine ligase B [Phenylobacterium zucineum HLK1]
          Length = 325

 Score =  335 bits (859), Expect = 6e-90,   Method: Composition-based stats.
 Identities = 142/299 (47%), Positives = 206/299 (68%), Gaps = 1/299 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG+SSEREVSL SG+ CA ALE  G KVS+ID  R +  VL+ LKPD+ FN LHG
Sbjct: 10  VAVLMGGLSSEREVSLVSGRECADALERLGAKVSRIDAGRDLAQVLSALKPDVCFNALHG 69

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG VQ +LE L IPYTHSG+LASAL+MDK ++K V+++ GVPV    L NR+ +  
Sbjct: 70  AWGEDGCVQGVLETLAIPYTHSGVLASALAMDKAKAKAVLAAAGVPVPGGGLYNRYDVAR 129

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +H+++PPYV+K    GSS+G+ +++   + P   +   SW +G+Q+++E ++ G+EL  G
Sbjct: 130 EHVMAPPYVVKANAEGSSVGVFIVRDRANRPPQEILEPSWTYGEQVMVEPFIRGMELAVG 189

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           VM   +++VTEI + + +FY YE KY+   S H++PA++P    ++ +  +  AH A+GC
Sbjct: 190 VMDGKAMEVTEI-LTEREFYDYEAKYAEGGSKHIVPARMPAHALEKAKEYSERAHAALGC 248

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
           RG++RSD  +D ++  +  LE+N QPGMTP S+ PE AA  G  F  L+LW+ EDA   
Sbjct: 249 RGVTRSDLRYDDINDILVLLEVNTQPGMTPTSLVPEQAAAQGVDFDRLVLWITEDAYAR 307


>gi|82703606|ref|YP_413172.1| D-alanine--D-alanine ligase [Nitrosospira multiformis ATCC 25196]
 gi|123543907|sp|Q2Y641|DDL_NITMU RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|82411671|gb|ABB75780.1| D-alanine--D-alanine ligase [Nitrosospira multiformis ATCC 25196]
          Length = 306

 Score =  335 bits (859), Expect = 7e-90,   Method: Composition-based stats.
 Identities = 108/298 (36%), Positives = 162/298 (54%), Gaps = 6/298 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+ERE+SL SGKA   AL  +G      D        L       A   LHG
Sbjct: 10  VAVLLGGRSAEREISLESGKAVLDALRSSGVDAHPFDPSEQHMDALLQQGYTRAHIALHG 69

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR-FTMD 119
            +GEDG VQ  LELL IPYT SG+LASAL+MDK R+K +  S G+     IL++     D
Sbjct: 70  RYGEDGTVQGALELLGIPYTGSGVLASALAMDKWRTKLLWQSAGINTPRHILLDEQSDFD 129

Query: 120 S-QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           +    +  P ++KP + GS++G+  +++   +      ++   H   +L EQ+++G ELT
Sbjct: 130 AVAKELGLPLIVKPSREGSTIGLSKVREAGEVAAAWHLAA--RHDAMVLAEQFIEGTELT 187

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             ++GD +L +  I V + D Y Y+ KY S  + +  P+ +  +    +++ A  AH+ +
Sbjct: 188 ASILGDVALPLVRIQV-EGDLYDYQAKYLSDKTQYFCPSGVSEEQECLIRKQALQAHRLL 246

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           GC G  R D + D      ++LE N  PGMT  S+ P  A  AG SF EL+L ++  A
Sbjct: 247 GCEGWGRVDLILDKS-GTPYFLEANTSPGMTTHSLVPMAAKAAGISFEELVLKILGLA 303


>gi|226943455|ref|YP_002798528.1| D-alanine--D-alanine ligase [Azotobacter vinelandii DJ]
 gi|226718382|gb|ACO77553.1| D-alanine--D-alanine ligase [Azotobacter vinelandii DJ]
          Length = 315

 Score =  335 bits (859), Expect = 7e-90,   Method: Composition-based stats.
 Identities = 110/302 (36%), Positives = 167/302 (55%), Gaps = 6/302 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+ER VSL SG+A   AL+ AG     IDV   +   L   + D AF VLHG
Sbjct: 17  VAVLFGGKSAERAVSLKSGQAVLEALQSAGVDAFGIDVGDDLLERLGRERIDRAFIVLHG 76

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118
             GEDG +Q +LE + IPYT SG+LASAL+MDK+R+KQV  S G+P     +    +   
Sbjct: 77  RGGEDGSMQGLLECVGIPYTGSGVLASALAMDKLRTKQVWQSLGLPTPRHAVPTSESDCR 136

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   +  P ++KP   GSS+G+  +     +    L  S+ +H  Q+L+EQ++ G E T
Sbjct: 137 AAARDLGFPLIVKPAHEGSSIGMAKVNDIDELIAAWL--SARSHDPQVLVEQWIQGPEFT 194

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             ++    L    +  P S FY Y+ KY + ++ + +P  +     +E++ L   A +A+
Sbjct: 195 VALLRGQVLPPIGLGTPHS-FYDYDAKYLASDTQYRIPCGLDSSKEEELKALCARACEAV 253

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           G +G +R D + D   R  + LE+N  PGMT  S+ P  A  AG  F++L+L ++ D+  
Sbjct: 254 GVQGWARVDVMQDAEGR-FWLLEVNTVPGMTDHSLVPMAARAAGLDFQQLVLAVLADSVE 312

Query: 299 LR 300
            R
Sbjct: 313 AR 314


>gi|212638041|ref|YP_002314561.1| D-alanyl-alanine synthetase A [Anoxybacillus flavithermus WK1]
 gi|212559521|gb|ACJ32576.1| D-alanyl-D-alanine ligase [Anoxybacillus flavithermus WK1]
          Length = 355

 Score =  334 bits (858), Expect = 8e-90,   Method: Composition-based stats.
 Identities = 92/332 (27%), Positives = 157/332 (47%), Gaps = 39/332 (11%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS------------------- 41
           + +L GG S E +VSL + ++  +A+    F V  I +                      
Sbjct: 13  LGILYGGKSPEHKVSLQTARSVINAINKEKFTVVPIYITTDGQWLRGEAIEGEVQHVNEL 72

Query: 42  ------VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
                   L L     D+ F +LHG  GEDG VQ +LELL +PY  +G+LASA+ MDK+ 
Sbjct: 73  AFQQGLPALALIANGIDVIFPLLHGPNGEDGTVQGMLELLNVPYVGNGVLASAVGMDKVV 132

Query: 96  SKQVVSSCGVPVCPSILVNRFTMD---------SQHLISPPYVIKPLKGGSSLGIIVIKK 146
            KQ+ +  G+     +   +   +          +  I  P  +KP   GSS+GI   K 
Sbjct: 133 MKQLFAQAGLKQARYVFFLKNEWEGQKENVYETVEQEIGYPCFVKPANAGSSVGISKCKN 192

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--DVTEIAVPKSDFYSYEL 204
            + +     +  ++ +  ++++E+ + G E+  GV+G+      V    VPK +FY YE 
Sbjct: 193 REQLQTAFQE--AFRYDRKVIVEEAIIGREVEIGVIGNDKPICSVVGEIVPKKEFYDYEA 250

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           KY   N+   +PA +    Y+ ++++A  A + +   G+ R+DF       +V+  E+N 
Sbjct: 251 KYVDGNTELFIPANVTDKEYETIKQMALAAFKVLDLAGLVRADFFLTA-DGEVYINEVNT 309

Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            PG TP S+FP +  + G  + EL+  +++ A
Sbjct: 310 MPGFTPFSMFPLLWKHTGIPYEELIERLIQLA 341


>gi|330445163|ref|ZP_08308815.1| D-alanine--D-alanine ligase [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328489354|dbj|GAA03312.1| D-alanine--D-alanine ligase [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 303

 Score =  334 bits (858), Expect = 8e-90,   Method: Composition-based stats.
 Identities = 110/301 (36%), Positives = 177/301 (58%), Gaps = 10/301 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VL GG SSEREVSL SG    SA++  G  V Q+D       +L   K D  F  LHG
Sbjct: 3   VGVLCGGRSSEREVSLKSGAQIVSAVKALGHDVIQLDPCSIDLSMLNLYKLDKVFIALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GE G +QA+L++L+IPY  SG+LASA+S++K+++K+V S+ G+   P +LV + T  S
Sbjct: 63  GLGESGHIQALLDILQIPYVGSGVLASAISLNKLKTKEVWSANGLLTAPWVLVRKSTSQS 122

Query: 121 QHL-----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175
             L     I+ P VIKPL  G S+G+     ++ +   LL  +++ + D++L+EQ++ G 
Sbjct: 123 DILKACGEITFPVVIKPLNQGCSIGVAKADNEEQLWQALL--AAFEYDDEVLVEQFIVGR 180

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
           E TC V+ D +L V +I      F+ +  K+ + ++T+  P+ +     K +Q++   A+
Sbjct: 181 EYTCAVLNDEALPVVQIC--SDTFFDWSAKFGTQSATYHCPSDLSEQEEKSMQQVVKAAY 238

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           +A+GCRG  R D L    +  V+ +E+N  PGMT  S++P  AA AG ++  L+  +++ 
Sbjct: 239 KALGCRGWGRVDVLLTE-NNDVYLIEMNTIPGMTERSVYPMAAAQAGLTYEALIAKLLDK 297

Query: 296 A 296
           A
Sbjct: 298 A 298


>gi|320540403|ref|ZP_08040053.1| putative D-alanine:D-alanine ligase [Serratia symbiotica str.
           Tucson]
 gi|320029334|gb|EFW11363.1| putative D-alanine:D-alanine ligase [Serratia symbiotica str.
           Tucson]
          Length = 306

 Score =  334 bits (858), Expect = 8e-90,   Method: Composition-based stats.
 Identities = 108/305 (35%), Positives = 164/305 (53%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+ERE+SL SG A  + L + G     ID      + L     +  F  LHG
Sbjct: 5   VAVLLGGTSAEREISLQSGAAVLAGLREGGIDAHGIDPRDFPVIQLKAQGFNKVFISLHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117
             GEDG +Q +LELLE+PYT SG++ASAL MDK RSK +  S  +PV P + +NR     
Sbjct: 65  RGGEDGTIQGLLELLELPYTGSGVMASALGMDKWRSKMLWQSMELPVAPYVALNRKQYAG 124

Query: 118 ------MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +D    +  P ++KP   GSS+G+  +   +S  L++    ++ + D++L+E++
Sbjct: 125 DEKAALLDRLASLGFPLIVKPSCEGSSVGMSKVS--ESSTLEVALEEAFRYDDEVLVEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++GD  L    I      FY Y+ KY S N+ +  P+ +  +   E+  LA
Sbjct: 183 LSGPEYTVAMLGDQVLPSIRIQ-SAGRFYDYQAKYISGNTQYFCPSGLSAEQEAEMAALA 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A++A+ CRG  R D + D      + LE+N  PGMT  S+ P  A   G SF +L+  
Sbjct: 242 LRAYRALDCRGWGRIDLMQD-SDGSFYLLEVNTSPGMTNNSLVPMAARQFGLSFSQLVTR 300

Query: 292 MVEDA 296
           ++  A
Sbjct: 301 ILALA 305


>gi|152980554|ref|YP_001354703.1| D-alanine--D-alanine ligase [Janthinobacterium sp. Marseille]
 gi|167012327|sp|A6T2F6|DDL_JANMA RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|151280631|gb|ABR89041.1| D-alanine-D-alanine ligase [Janthinobacterium sp. Marseille]
          Length = 320

 Score =  334 bits (857), Expect = 9e-90,   Method: Composition-based stats.
 Identities = 112/306 (36%), Positives = 158/306 (51%), Gaps = 13/306 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VL GG S+EREVSL SGK   +AL   G      D        LA  K D  F  LHG
Sbjct: 8   VGVLFGGRSAEREVSLMSGKGVLAALLSKGIDAHPFDPAERSLAELAAEKFDRVFIALHG 67

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG +Q  LE L IPYT  G++ASA++MDK+ +K+V  S GVP      +      +
Sbjct: 68  RFGEDGSLQGALEQLGIPYTGPGVMASAIAMDKVITKRVCLSHGVPTPKFTALEVEATTA 127

Query: 121 QHL------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
           + L         P ++K    GS++GI  ++  + +       +   + D +L+EQ+V G
Sbjct: 128 EQLQAIAAEFGMPLMLKAPHEGSTIGIAKVETAEGMQAGFDLCA--KYDDVVLVEQFVKG 185

Query: 175 IELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            ELT  V+G      +L + EI  P+ + Y YE KY S ++ ++ PA       K VQ L
Sbjct: 186 RELTVPVLGSGRNARALPIVEIIAPQGN-YDYEHKYFSDDTQYLCPAPFDAAFTKRVQAL 244

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A  A  A+GC G +R DFL      + F LEIN  PGMT  S+ P  A  AG ++ +L +
Sbjct: 245 AVSAFNAVGCTGWARVDFLVRESDNEPFLLEINTSPGMTGHSLVPMSAKVAGTAYEDLCV 304

Query: 291 WMVEDA 296
            ++  A
Sbjct: 305 EILRMA 310


>gi|70732382|ref|YP_262138.1| D-alanine--D-alanine ligase [Pseudomonas fluorescens Pf-5]
 gi|68346681|gb|AAY94287.1| D-alanine--D-alanine ligase [Pseudomonas fluorescens Pf-5]
          Length = 318

 Score =  334 bits (857), Expect = 9e-90,   Method: Composition-based stats.
 Identities = 109/302 (36%), Positives = 166/302 (54%), Gaps = 6/302 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL SGKA   AL+  G     IDV   +   L   K D AF +LHG
Sbjct: 20  VAVLYGGKSAEREVSLKSGKAVLEALQSGGVNAFGIDVGDDLLQRLLSEKIDRAFIILHG 79

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--M 118
             GEDG +Q +LE L IPYT SGILASAL+MDK+R+KQV  S G+P     +++     +
Sbjct: 80  RGGEDGSMQGLLECLGIPYTGSGILASALAMDKLRTKQVWHSLGIPTPRHAVLSSEADCI 139

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   +  P ++KP   GSS+G+  +     +      +S   +  Q+L+EQ++ G E T
Sbjct: 140 SAVAELGLPLIVKPAHEGSSIGMAKVTSASELIDAWKAAS--TYDSQVLVEQWIQGPEFT 197

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              + D  L    +  P + FY Y+ KY + ++ + +P  +     +E+  L   A +A+
Sbjct: 198 IATLRDQVLPPIALGTPHT-FYDYDAKYLASDTQYRIPCGLDSSKEQELMELTAKACEAL 256

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           G  G +R+D + D    + ++LE+N  PGMT  S+ P  A  AG  F++L+L ++  +  
Sbjct: 257 GIAGWARADVMQDAQ-GQFWFLEVNTAPGMTDHSLVPMAARAAGLDFQQLVLAILAASLE 315

Query: 299 LR 300
            R
Sbjct: 316 AR 317


>gi|138893874|ref|YP_001124327.1| D-alanyl-alanine synthetase A [Geobacillus thermodenitrificans
           NG80-2]
 gi|196250552|ref|ZP_03149242.1| D-alanine--D-alanine ligase [Geobacillus sp. G11MC16]
 gi|166198485|sp|A4IJS8|DDL_GEOTN RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|134265387|gb|ABO65582.1| D-alanine-D-alanine ligase [Geobacillus thermodenitrificans NG80-2]
 gi|196209901|gb|EDY04670.1| D-alanine--D-alanine ligase [Geobacillus sp. G11MC16]
          Length = 364

 Score =  334 bits (857), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 92/347 (26%), Positives = 158/347 (45%), Gaps = 54/347 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           + VL GG S E +VSLS+ +A  +A++   F V  I +      +               
Sbjct: 5   VGVLYGGKSPEHQVSLSTARAVMNAIDPHKFDVIPIYITPEGQWIKGKRLTGTVEEVKQL 64

Query: 47  --------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYT 80
                                          D+ F +LHG  GEDG VQ +LE+L +PY 
Sbjct: 65  QFTSTATAMIPVSLNQVPASGSATESDEETIDVIFPLLHGPNGEDGTVQGLLEMLNLPYV 124

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIK 131
            +G+LASA+ MDK+  K + +  G+     + V ++             +  +  P  +K
Sbjct: 125 GNGVLASAVGMDKVVMKNLFAQAGLRQAKYVSVTKYEWKKGGEAVYDRIEQELGYPCFVK 184

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--DV 189
           P   GSS+GI   K+   +      + ++ +  +++IE+ + G E+  GV+G+      V
Sbjct: 185 PANAGSSVGISKCKQRDDLKTAF--AEAFKYDRKIIIEESIVGREIEIGVIGNDEPICSV 242

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
               VPK +FY YE KY    +  ++PA +  + Y+ ++ +A  A +A+   G++R DF 
Sbjct: 243 AGEIVPKKEFYDYEAKYEDGQTELIIPANVTEEQYETIKSMAIAAFKALDLSGLARVDFF 302

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                  V+  E+N  PG TP S+FP +  ++G  + EL+  ++  A
Sbjct: 303 L-AEDGTVYINEVNTMPGFTPYSMFPLLWQHSGVPYSELIERLIALA 348


>gi|294670617|ref|ZP_06735495.1| hypothetical protein NEIELOOT_02341 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291307656|gb|EFE48899.1| hypothetical protein NEIELOOT_02341 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 308

 Score =  334 bits (857), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 106/298 (35%), Positives = 161/298 (54%), Gaps = 6/298 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSEREVSL+SG+A   AL   G      D   +    L     D AFN+LHG
Sbjct: 12  VAVLMGGFSSEREVSLASGQAVLEALRSKGVDAHAFDPKETPLGELKTQGFDCAFNILHG 71

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--M 118
            FGEDG VQ  LE L I YT  G+LAS++ MDK RSK +    G+PV    ++   +   
Sbjct: 72  VFGEDGTVQGALEALGIRYTGCGVLASSIGMDKYRSKLLWKGLGLPVPDYAVLRDDSDFD 131

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
             +  +  P  +KP   GSS+G++ +K+   +     +   +    +++ E ++ G E T
Sbjct: 132 AVERQLGLPMFVKPANEGSSVGVVKVKEAGRLKEVYHELKQFR--GEIIAEAFIGGGEYT 189

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           CG++   +L    I +P ++FY  E KY   ++ ++ P+ +  +  + ++ L   A  AI
Sbjct: 190 CGILNGRALPSVRI-IPATEFYDKEAKYDRDDTVYLCPSDLSEEDERLMRDLTVRAFHAI 248

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           G RG  R DFL D   R ++ LE N  PGMT  S+ P+ AA  G+ F +L + +++ A
Sbjct: 249 GGRGWGRIDFLKDESGR-LYLLEANTLPGMTSHSLVPKAAAQQGWDFAQLCVEILKTA 305


>gi|49083732|gb|AAT51128.1| PA4410 [synthetic construct]
          Length = 320

 Score =  334 bits (857), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 105/302 (34%), Positives = 162/302 (53%), Gaps = 6/302 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL SG     +L  AG     IDV   +   L   K D AF +LHG
Sbjct: 21  VAVLFGGKSAEREVSLKSGAMVLQSLLAAGVDAFGIDVGEDLLQRLVEEKIDRAFIILHG 80

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118
             GEDG VQ +LE   IPYT SG+LASAL+MDK+R+K+V  S G+P     ++       
Sbjct: 81  RGGEDGSVQGLLECAGIPYTGSGVLASALAMDKLRTKRVWLSLGLPTPDYAVLASEDDCR 140

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           ++   +  P ++KP   GSS+G+  +     +     +++   +  Q+L+EQ++ G E T
Sbjct: 141 EAAQRLGFPLIVKPAHEGSSIGMAKVGGLDELIAAWREAA--RYDSQVLVEQWISGPEFT 198

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +    L    +  P + FY Y+ KY + ++ + +P  +     +E++ L   A  A+
Sbjct: 199 VATLRGQVLPAIRLGTPHT-FYDYDAKYLASDTRYQVPCGLDEAKERELKELTARACDAL 257

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           G +G  R+D + D   R  + LE+N  PGMT  S+ P  A  AG  F++L+L ++ D+  
Sbjct: 258 GIQGWGRADVMQDAEGR-FWLLEVNTAPGMTDHSLVPMAARAAGLDFQQLVLAILADSRE 316

Query: 299 LR 300
            R
Sbjct: 317 AR 318


>gi|107100005|ref|ZP_01363923.1| hypothetical protein PaerPA_01001026 [Pseudomonas aeruginosa PACS2]
          Length = 319

 Score =  334 bits (857), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 104/302 (34%), Positives = 162/302 (53%), Gaps = 6/302 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL SG     +L  AG     IDV   +   L   K D AF +LHG
Sbjct: 21  VAVLFGGKSAEREVSLKSGAMVLQSLLAAGVDAFGIDVGEDLLQRLVEEKIDRAFIILHG 80

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118
             GEDG +Q +LE   IPYT SG+LASAL+MDK+R+K+V  S G+P     ++       
Sbjct: 81  RGGEDGSMQGLLECAGIPYTGSGVLASALAMDKLRTKRVWLSLGLPTPDYAVLANEDDCR 140

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           ++   +  P ++KP   GSS+G+  +     +     +++   +  Q+L+EQ++ G E T
Sbjct: 141 EAAQRLGFPLIVKPAHEGSSIGMAKVGGLDELIAAWREAA--RYDSQVLVEQWISGPEFT 198

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +    L    +  P + FY Y+ KY + ++ + +P  +     +E++ L   A  A+
Sbjct: 199 VATLRGQVLPAIRLGTPHT-FYDYDAKYLASDTRYQVPCGLDEAKERELKELTARACDAL 257

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           G +G  R+D + D   R  + LE+N  PGMT  S+ P  A  AG  F++L+L ++ D+  
Sbjct: 258 GIQGWGRADVMQDAEGR-FWLLEVNTAPGMTDHSLVPMAARAAGLDFQQLVLAILADSRE 316

Query: 299 LR 300
            R
Sbjct: 317 AR 318


>gi|229588492|ref|YP_002870611.1| D-alanine--D-alanine ligase [Pseudomonas fluorescens SBW25]
 gi|229360358|emb|CAY47215.1| D-alanine--D-alanine ligase B [Pseudomonas fluorescens SBW25]
          Length = 318

 Score =  334 bits (857), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 107/302 (35%), Positives = 161/302 (53%), Gaps = 6/302 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL SG A   AL+ AG     IDV       L   K D AF +LHG
Sbjct: 20  VAVLFGGKSAEREVSLKSGNAVLEALQSAGVNAFGIDVGDDFLARLQAEKIDRAFIILHG 79

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--M 118
             GEDG +Q +LE   IPYT SGILASAL+MDK+R+KQV  S G+P     ++      +
Sbjct: 80  RGGEDGSMQGLLECAGIPYTGSGILASALAMDKLRTKQVWHSLGIPTPRHSVLCSEDDCI 139

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   +  P ++KP   GSS+G+  +     +      +S   +  Q+L+EQ++ G E T
Sbjct: 140 SAAKELGLPLIVKPAHEGSSIGMAKVNSAAELIDAWKAAS--TYDSQVLVEQWIQGPEYT 197

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +    L    +  P + FY Y+ KY + ++ + +P  +     +E+  L   A +A+
Sbjct: 198 IATLRGQVLPPIALGTPHT-FYDYDAKYVASDTQYRIPCGLDATKEQELMDLTAKACEAL 256

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           G  G +R+D + D      ++LE+N  PGMT  S+ P  A  AG  F++L+L ++  +  
Sbjct: 257 GIAGWARADVMQDDQGN-FWFLEVNTAPGMTDHSLVPMAARAAGLDFQQLVLAILAASIE 315

Query: 299 LR 300
            R
Sbjct: 316 PR 317


>gi|254238927|ref|ZP_04932250.1| D-alanine-D-alanine ligase [Pseudomonas aeruginosa C3719]
 gi|254244779|ref|ZP_04938101.1| D-alanine-D-alanine ligase [Pseudomonas aeruginosa 2192]
 gi|126170858|gb|EAZ56369.1| D-alanine-D-alanine ligase [Pseudomonas aeruginosa C3719]
 gi|126198157|gb|EAZ62220.1| D-alanine-D-alanine ligase [Pseudomonas aeruginosa 2192]
          Length = 319

 Score =  334 bits (856), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 104/302 (34%), Positives = 162/302 (53%), Gaps = 6/302 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL SG     +L  AG     IDV   +   L   K D AF +LHG
Sbjct: 21  VAVLFGGKSAEREVSLKSGAMVLQSLLAAGVDAFGIDVGEDLLQRLVEEKIDRAFIILHG 80

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118
             GEDG +Q +LE   IPYT SG+LASAL+MDK+R+K+V  S G+P     ++       
Sbjct: 81  RGGEDGSMQGLLECAGIPYTGSGVLASALAMDKLRTKRVWLSLGLPTPDYAVLASEDDCR 140

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           ++   +  P ++KP   GSS+G+  +     +     +++   +  Q+L+EQ++ G E T
Sbjct: 141 EAAQRLGFPLIVKPAHEGSSIGMAKVGGLDELIAAWREAA--RYDSQVLVEQWISGPEFT 198

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +    L    +  P + FY Y+ KY + ++ + +P  +     +E++ L   A  A+
Sbjct: 199 VATLRGQVLPAIRLGTPHT-FYDYDAKYLASDTRYQVPCGLDEAKERELKELTARACDAL 257

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           G +G  R+D + D   R  + LE+N  PGMT  S+ P  A  AG  F++L+L ++ D+  
Sbjct: 258 GIQGWGRADVMQDAKGR-FWLLEVNTAPGMTDHSLVPMAARAAGLDFQQLVLAILADSRE 316

Query: 299 LR 300
            R
Sbjct: 317 AR 318


>gi|15599606|ref|NP_253100.1| D-alanine--D-alanine ligase [Pseudomonas aeruginosa PAO1]
 gi|296391119|ref|ZP_06880594.1| D-alanine--D-alanine ligase [Pseudomonas aeruginosa PAb1]
 gi|39931188|sp|Q9LCT6|DDLB_PSEAE RecName: Full=D-alanine--D-alanine ligase B; AltName:
           Full=D-Ala-D-Ala ligase B; AltName: Full=D-alanylalanine
           synthetase B
 gi|9950642|gb|AAG07798.1|AE004856_9 D-alanine--D-alanine ligase [Pseudomonas aeruginosa PAO1]
 gi|6715617|gb|AAF26456.1| D-alanine:D-alanine ligase B [Pseudomonas aeruginosa PAO1]
          Length = 319

 Score =  334 bits (856), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 104/302 (34%), Positives = 162/302 (53%), Gaps = 6/302 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL SG     +L  AG     IDV   +   L   K D AF +LHG
Sbjct: 21  VAVLFGGKSAEREVSLKSGAMVLQSLLAAGVDAFGIDVGEDLLQRLVEEKIDRAFIILHG 80

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118
             GEDG +Q +LE   IPYT SG+LASAL+MDK+R+K+V  S G+P     ++       
Sbjct: 81  RGGEDGSMQGLLECAGIPYTGSGVLASALAMDKLRTKRVWLSLGLPTPDYAVLASEDDCR 140

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           ++   +  P ++KP   GSS+G+  +     +     +++   +  Q+L+EQ++ G E T
Sbjct: 141 EAAQRLGFPLIVKPAHEGSSIGMAKVGGLDELIAAWREAA--RYDSQVLVEQWISGPEFT 198

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +    L    +  P + FY Y+ KY + ++ + +P  +     +E++ L   A  A+
Sbjct: 199 VATLRGQVLPAIRLGTPHT-FYDYDAKYLASDTRYQVPCGLDEAKERELKELTARACDAL 257

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           G +G  R+D + D   R  + LE+N  PGMT  S+ P  A  AG  F++L+L ++ D+  
Sbjct: 258 GIQGWGRADVMQDAEGR-FWLLEVNTAPGMTDHSLVPMAARAAGLDFQQLVLAILADSRE 316

Query: 299 LR 300
            R
Sbjct: 317 AR 318


>gi|194290811|ref|YP_002006718.1| d-alanine--d-alanine ligase [Cupriavidus taiwanensis LMG 19424]
 gi|229463747|sp|B3R6V7|DDL_CUPTR RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|193224646|emb|CAQ70657.1| D-alanine-D-alanine ligase B, affects cell division [Cupriavidus
           taiwanensis LMG 19424]
          Length = 327

 Score =  334 bits (856), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 99/303 (32%), Positives = 168/303 (55%), Gaps = 10/303 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VL+GG S+ERE+SL SG    +AL+  G      D        LA    D  F  LHG
Sbjct: 17  VGVLLGGRSAEREISLMSGNGVLAALQSRGVDAHGFDPGLQGVAELAAAGFDRVFIALHG 76

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG +Q +LE L +PYT SG+LASAL+MDK  +K++  + G+      +++  T   
Sbjct: 77  RYGEDGTIQGLLEQLGVPYTGSGVLASALAMDKQATKRLWMTHGLATPRFAMLHADTDFD 136

Query: 121 Q--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                +  P ++KP + GSS+G+  +     +     ++++ ++   ++ E +VDG ELT
Sbjct: 137 AVVADLGLPLIVKPAREGSSIGLTKVTAADQMRAAFDKAAALDND--VIAETFVDGAELT 194

Query: 179 CGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
           C V+G+     +L V  I  P+++ Y Y+ KY + ++ ++ P+ +  ++ ++VQ LA  A
Sbjct: 195 CPVVGEGDTAEALPVIRIVAPEAN-YDYQNKYFTDDTQYLCPSGLDAEVERQVQALAVQA 253

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           ++ +GCRG +R+D +        F LE+N  PGMT  S+ P  A   G S+ + +L ++ 
Sbjct: 254 YRVLGCRGWARADVMLRA-DGTPFLLEMNTSPGMTGHSLVPMAARAVGISYEDFVLQVLA 312

Query: 295 DAS 297
            A+
Sbjct: 313 AAT 315


>gi|291279001|ref|YP_003495836.1| D-alanine-D-alanine ligase [Deferribacter desulfuricans SSM1]
 gi|290753703|dbj|BAI80080.1| D-alanine-D-alanine ligase [Deferribacter desulfuricans SSM1]
          Length = 291

 Score =  334 bits (856), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 101/294 (34%), Positives = 166/294 (56%), Gaps = 9/294 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG+SSEREVSL +G+A   AL++ G+    IDVD +V   +   +PD  F  LHG
Sbjct: 5   IAVLCGGLSSEREVSLKTGEAVKQALDNLGYDAFLIDVDNNVDKKIRETQPDYCFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG +Q +LE+L IPY  +G+ ASA++ DK  +K +V S G+      L      + 
Sbjct: 65  KYGEDGSIQGLLEVLGIPYNGAGVAASAIAYDKHLTKVLVQSVGIKTPDYYL----CEND 120

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           + +   P V+KP + GS++GI ++K           S +  +  ++LIE++++G ELT G
Sbjct: 121 KDIRFLPAVVKPAREGSTIGISIVKSKDEFSKAF--SEAKKYDSRVLIERFIEGKELTVG 178

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           ++ +  L    I   K  FY YE KY+   + ++    + +D   ++  ++      IGC
Sbjct: 179 IINNEVLPTIYIKPIK-GFYDYESKYTKGMTEYIFETGLNVDETDKLNNISLKVADLIGC 237

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             + R D+++D   ++ F LE+N  PGMT  S+ P+ A  AGY F +L+  +++
Sbjct: 238 SSLCRIDYIYD--GKEFFLLEVNTIPGMTETSLLPKAAKKAGYDFEKLIDKIIK 289


>gi|289548161|ref|YP_003473149.1| D-alanine/D-alanine ligase [Thermocrinis albus DSM 14484]
 gi|289181778|gb|ADC89022.1| D-alanine/D-alanine ligase [Thermocrinis albus DSM 14484]
          Length = 288

 Score =  334 bits (856), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 108/293 (36%), Positives = 165/293 (56%), Gaps = 8/293 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VLMGG S ERE+SL +G+A   AL   G +   +DV   +   L  +KPD  F  LHG
Sbjct: 3   VVVLMGGRSYEREISLKTGEAILRALRQLGHEAVPLDVTEDLCQRLLEIKPDKVFIALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG VQA+L+LL IPY  SG+LASAL+MDK  +K++++  G+PV   I V R     
Sbjct: 63  PYGEDGRVQAVLDLLGIPYVGSGVLASALAMDKDFTKKILAFHGIPVPRWIAVKRNAPFR 122

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            +L   P V+KP   GSS+G+ V++K++ + L L +   W    + LIE+++ G ++T G
Sbjct: 123 WNL--FPAVVKPADQGSSIGLHVVEKEEDLTLALEEV--WKVSQKALIEEFIQGKDVTVG 178

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           ++ D  L   EI  PK   Y YE KY+   + +V        + +++Q +A   H  +  
Sbjct: 179 ILKDKPLPPIEIR-PKKGVYDYESKYTKGMTEYVFVE--DPSVVEKLQEIALKVHTLLEL 235

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           + +SR DF         + LE+N  PGMT +S+FP     AG  F +++  ++
Sbjct: 236 KDMSRIDFRLS-DDGTPYVLEVNTIPGMTELSLFPMACNKAGIDFAQMVHILL 287


>gi|90416338|ref|ZP_01224270.1| D-alanylalanine synthetase [marine gamma proteobacterium HTCC2207]
 gi|90332063|gb|EAS47277.1| D-alanylalanine synthetase [marine gamma proteobacterium HTCC2207]
          Length = 302

 Score =  334 bits (856), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 104/298 (34%), Positives = 156/298 (52%), Gaps = 6/298 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + +L GG SSEREVSL SG+A   AL + G  V  ID D ++   L   + DL F  LHG
Sbjct: 8   VGLLYGGTSSEREVSLMSGQAIHRALLNMGVDVVAIDADDNLLQSLPGHQLDLVFIALHG 67

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q  LE L++PYT SG+LASAL+MDK+R KQ+    G+P     L+   +  S
Sbjct: 68  PGGEDGTLQGALEYLKLPYTGSGVLASALAMDKLRCKQMWQGIGLPTTDFALLEADSDWS 127

Query: 121 QHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
             L  +    ++KP   GSS+G+      + +      +S   +   ++ E  + G E T
Sbjct: 128 AELQRLGGQVMVKPAAEGSSIGMSCAATPEQLQAAWADAS--QYNTAVIAEPLLPGPEYT 185

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             ++    L    I    ++FY Y+ KY S  + ++ P+++     +E+Q L   A  ++
Sbjct: 186 VAILDGQVLPSIRIE-SNAEFYDYQAKYFSDQTQYLCPSELSESREQELQTLCLQAFDSV 244

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           GCRG  R D + D    +   LE+N  PGMT  S+ P  A  AG SF +L+  ++  A
Sbjct: 245 GCRGWGRVDVMVDHQ-GQFQLLEVNTVPGMTSHSLVPMAAKAAGLSFDQLVEKILAGA 301


>gi|238784567|ref|ZP_04628574.1| D-alanine--D-alanine ligase [Yersinia bercovieri ATCC 43970]
 gi|238714533|gb|EEQ06538.1| D-alanine--D-alanine ligase [Yersinia bercovieri ATCC 43970]
          Length = 289

 Score =  333 bits (855), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 99/291 (34%), Positives = 153/291 (52%), Gaps = 13/291 (4%)

Query: 15  SLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILEL 74
           SL SG+A  + L +AG     ID        L     D  F  LHG  GEDG +Q +LE 
Sbjct: 2   SLLSGQAVLAGLREAGIDAHGIDTKEFPVTQLKAQGFDKVFIALHGRGGEDGTLQGVLEF 61

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ---------HLIS 125
           L +PYT SG++ASAL+MDK+R+K V  +  +P+ P + +NR   ++            + 
Sbjct: 62  LGLPYTGSGVMASALTMDKLRTKLVWQALDLPISPYVALNRQQFETLSSEELAARVAKLG 121

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            P ++KP   GSS+G+  +     +   L++  ++ H   +LIE+++ G E T G++GD 
Sbjct: 122 LPLIVKPSHEGSSVGMSKVDHANELQGALVE--AFRHDTDVLIEKWLSGPEFTVGILGDD 179

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
            L    I VP   FY YE KY S  + +  P+ +  ++ +++  LA  A+QA+GC G  R
Sbjct: 180 VLPSIRIQVP-GVFYDYEAKYLSDETQYFCPSGLSTELEQQLAALALRAYQALGCSGWGR 238

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            D + D      + LE+N  PGMT  S+ P  A   G SF +L+  ++  A
Sbjct: 239 VDVMQD-SDGNFYLLEVNTSPGMTSHSLVPMAARQHGLSFSQLVARILTLA 288


>gi|172057823|ref|YP_001814283.1| D-alanine--D-alanine ligase [Exiguobacterium sibiricum 255-15]
 gi|171990344|gb|ACB61266.1| D-alanine--D-alanine ligase [Exiguobacterium sibiricum 255-15]
          Length = 315

 Score =  333 bits (855), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 124/304 (40%), Positives = 174/304 (57%), Gaps = 12/304 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GGIS EREVSL+SGK+  +ALE  G +V  +D        + +L+ + A   LHG
Sbjct: 3   VAVLFGGISGEREVSLNSGKSVINALESKGHEVVAVDFHPERAEEILNLQVEAAVIALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG VQA+LE+  IPYT SG+LASAL+MDK RSK      G+ +   +LV R     
Sbjct: 63  KYGEDGRVQALLEMAGIPYTGSGVLASALAMDKARSKVHFEKAGIRIARDVLVERGDDIE 122

Query: 121 QHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
           Q +       P V+KP + GSS G+ +   +Q +   +    ++   D +LIEQ++ G E
Sbjct: 123 QKIKQWDAQFPCVVKPAQEGSSNGLTIAMDEQMLRQGI--ELAFQADDAVLIEQFIKGRE 180

Query: 177 LTCGVMG----DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
           +T  V+G    + +L V EI +PK++FY YE KY+   S H+ PA+      + +Q  A 
Sbjct: 181 VTVPVLGAKGQEKALPVIEI-IPKNEFYDYESKYAIGGSEHICPAQFDEKTTQTLQEWAV 239

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           LAHQ +GC G SR+DFL  P       LE N  PGMT  S+FP+ A   G  + EL+   
Sbjct: 240 LAHQVLGCAGYSRTDFLV-PDEGAPVILETNTLPGMTSTSLFPDGARAVGIDYPELVETF 298

Query: 293 VEDA 296
           +E A
Sbjct: 299 IELA 302


>gi|121535915|ref|ZP_01667711.1| D-alanine--D-alanine ligase [Thermosinus carboxydivorans Nor1]
 gi|121305486|gb|EAX46432.1| D-alanine--D-alanine ligase [Thermosinus carboxydivorans Nor1]
          Length = 316

 Score =  333 bits (855), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 106/302 (35%), Positives = 172/302 (56%), Gaps = 12/302 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS-VGLVLAHLKPDLAFNVLH 59
           + VLMGG S+EREVSL++GKA   AL + G+    ID+D       L        FN +H
Sbjct: 6   IGVLMGGPSTEREVSLNTGKAILGALREKGYDAVGIDLDPPRFLEQLRENGVTFVFNAIH 65

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT-- 117
           G FGEDG +Q  L+LL IPYT SG+LASAL+MDK  SK++  + G+P   + +  +    
Sbjct: 66  GKFGEDGALQGALDLLGIPYTGSGVLASALAMDKSISKRLFQAAGIPTPRAEIYTKADAK 125

Query: 118 ----MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
                +       P V+K    GSS+G+++++++  +   +++  ++ + D +++E ++ 
Sbjct: 126 RNLVAEIMQKFPIPLVVKAAAQGSSIGVVIVEEESQVQAAVVE--AFRYSDCIVVENFIK 183

Query: 174 GIELTCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           G ELT  ++G   L+V  I   VP S  Y Y  KY+   + +++PA+I  +  + V+++A
Sbjct: 184 GKELTVAILGGEPLEVLPIIEIVPHSGRYDYHSKYTKGTTDYIIPARIDDNAAERVRQVA 243

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A   +GCRG++R D + D      + LE+N  PGMT  S+ P+ AA AG SF +L   
Sbjct: 244 VAAFNLLGCRGVARVDIMLD-DDNNPYVLEVNTIPGMTATSLVPKAAAAAGISFADLCER 302

Query: 292 MV 293
           ++
Sbjct: 303 IL 304


>gi|71735690|ref|YP_276228.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. phaseolicola
           1448A]
 gi|71556243|gb|AAZ35454.1| D-alanine--D-alanine ligase B [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|320322448|gb|EFW78541.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. glycinea str.
           B076]
 gi|320330083|gb|EFW86070.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. glycinea str.
           race 4]
          Length = 319

 Score =  333 bits (855), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 113/302 (37%), Positives = 165/302 (54%), Gaps = 6/302 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+ER VSL+SG A   AL DAG     IDV       L   K D AF VLHG
Sbjct: 21  VAVLFGGKSAERAVSLNSGNAVLKALLDAGVDAFGIDVGDDFLQRLVSEKIDRAFIVLHG 80

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTM 118
             GEDG +Q +LE LEIPYT SG+LASAL+MDK+R+KQV  S G+      ++      +
Sbjct: 81  RGGEDGTMQGLLECLEIPYTGSGVLASALAMDKLRTKQVWQSLGLATPLHAVLGNESDCI 140

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   +  P ++KP   GSS+G+  +     +      +S   +  Q+L+EQ++ G E T
Sbjct: 141 CAATELGFPLIVKPAHEGSSIGMAKVNSVDELIAAWKAAS--TYDSQVLVEQWIQGPEFT 198

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +    L    +  P S FY Y+ KY + ++ + +P  +     +E+++LA  A  AI
Sbjct: 199 VASLRGQVLPPIGLGTPHS-FYDYDAKYLASDTQYRIPCGLGDAQEQELKQLAARACDAI 257

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           G  G +R+D + D    K + LE+N  PGMT  S+ P  A  AG  F++L+L ++ D+  
Sbjct: 258 GIAGWARTDVMQDAQ-GKFWLLEVNTVPGMTDHSLVPMAARAAGLDFQQLVLAILADSVQ 316

Query: 299 LR 300
            R
Sbjct: 317 AR 318


>gi|114330270|ref|YP_746492.1| D-alanine--D-alanine ligase [Nitrosomonas eutropha C91]
 gi|122314679|sp|Q0AJE4|DDL_NITEC RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|114307284|gb|ABI58527.1| D-alanine--D-alanine ligase [Nitrosomonas eutropha C91]
          Length = 306

 Score =  333 bits (855), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 105/296 (35%), Positives = 164/296 (55%), Gaps = 6/296 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+ERE+SL SG A  +AL+ +       D        L     D AF  LHG
Sbjct: 9   VAVLLGGRSAEREISLKSGHAVLAALQRSQVDAHAFDPVGQPLEDLLKQGFDRAFIALHG 68

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--M 118
            +GEDG VQ  LEL+++PYT SGILASAL+MDK R+K +  + G+     ++++  +   
Sbjct: 69  RYGEDGSVQGALELMDLPYTGSGILASALAMDKWRTKMIWQAAGISTPDYVMLDADSNFQ 128

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           +    +  P +IKP + GS++G+  +   Q +      ++   H   ++ EQ++ GIELT
Sbjct: 129 EVTDRLGLPLIIKPAREGSTIGLNKVDYAQDMQSAYQTAA--QHDSLVIAEQFIQGIELT 186

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             ++ D  L +  I V +   Y Y+ KY S ++ +  P+ +   +   +Q  A  AH+ +
Sbjct: 187 AAILDDVPLPLVRIDVTE-GLYDYQAKYFSESTRYTCPSGLSKILTTRIQEQALYAHRIL 245

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           GC G SR D + D  + + F+LE N  PGMT  S+ P  A  AG SF EL++ ++E
Sbjct: 246 GCTGWSRVDLILDK-NGQPFFLEANTSPGMTNHSLVPMAAQAAGISFDELVIQILE 300


>gi|94501894|ref|ZP_01308404.1| D-alanylalanine synthetase [Oceanobacter sp. RED65]
 gi|94425947|gb|EAT10945.1| D-alanylalanine synthetase [Oceanobacter sp. RED65]
          Length = 301

 Score =  333 bits (855), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 103/297 (34%), Positives = 158/297 (53%), Gaps = 6/297 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AV++GG S+EREVSL SG+A   AL        +ID  R++   LA  K D AF  LHG
Sbjct: 7   VAVILGGNSAEREVSLRSGEAIYQALIAQDIDAVKIDSARNLIGQLAEQKVDRAFIALHG 66

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118
             GEDG +Q +LE   IPYT SG+ ASA+ MDK RSK +     +P     LV   +   
Sbjct: 67  VGGEDGTIQGLLEFYGIPYTGSGVKASAICMDKWRSKLIWQGLSLPTPKFTLVESLSDLK 126

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           +  + +  P ++KP   GSS+GI  +  +  +    + +     G  +L EQ+V+G+E T
Sbjct: 127 EFANQVGYPLMVKPSLEGSSIGISKVASEAQLERAFVDAK--QTGSSVLAEQFVEGLEFT 184

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
            G++   +L   ++    +DFY Y  KY   ++ +++P  +  +    +Q LA  A+Q++
Sbjct: 185 VGILDGKALPAIQLKAA-NDFYDYNAKYLQNDTQYIVPCGLESEKEACLQSLALQAYQSL 243

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
            C G  R D + D      + +E+N  PGMT  S+ P  A   G SF  L+L ++E 
Sbjct: 244 DCHGWGRVDVMQDAK-GDFWLIEVNTIPGMTDHSLVPMAAKARGMSFEALVLNILET 299


>gi|121611481|ref|YP_999288.1| D-alanine--D-alanine ligase [Verminephrobacter eiseniae EF01-2]
 gi|190359218|sp|A1WRL3|DDL_VEREI RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|121556121|gb|ABM60270.1| D-alanine--D-alanine ligase [Verminephrobacter eiseniae EF01-2]
          Length = 331

 Score =  333 bits (855), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 107/305 (35%), Positives = 159/305 (52%), Gaps = 11/305 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG+S+EREVSL SG     AL          D  +     L        F  LHG
Sbjct: 16  VAVLMGGVSAEREVSLLSGAGVLRALRARAVDAHAFDTAQGDLGALKREGYARCFIALHG 75

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG VQ  LELL I YT SG++AS++++DK  SK++  S G+P     LV       
Sbjct: 76  RHGEDGTVQGALELLGIAYTGSGVMASSMALDKTMSKRIWRSEGLPTPDWRLVTSGAEAG 135

Query: 121 QHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           Q L  +  P ++KP + GS++G+  + + Q      L ++   +  ++L EQ++ G ELT
Sbjct: 136 QALQTLGAPMIVKPAREGSTIGLSKVHQAQQCASAYLLAA--RYDPEVLCEQFIAGDELT 193

Query: 179 CGVMGDA------SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
           C V+         +L +  I  P  + Y Y+ KY S  + +  P+ +P    + + RLA 
Sbjct: 194 CTVLDQGRRASAQALPLIRIVAPDGN-YDYQHKYFSDATRYHCPSGLPEAQERAIGRLAE 252

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
            A  A+GCRG +R+D +     ++ F LEIN  PGMT  S+ P  A  AG S+ +L L +
Sbjct: 253 QAFSALGCRGWARADIMLRASDQQPFLLEINTAPGMTDHSLVPMSARAAGISYEDLCLRL 312

Query: 293 VEDAS 297
           +  A+
Sbjct: 313 LAMAT 317


>gi|257483445|ref|ZP_05637486.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. tabaci ATCC
           11528]
 gi|331011579|gb|EGH91635.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. tabaci ATCC
           11528]
          Length = 319

 Score =  333 bits (855), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 113/302 (37%), Positives = 165/302 (54%), Gaps = 6/302 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+ER VSL+SG A   AL DAG     IDV       L   K D AF VLHG
Sbjct: 21  VAVLFGGKSAERAVSLNSGNAVLKALLDAGVDAFGIDVGDDFLQRLVSEKIDRAFIVLHG 80

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTM 118
             GEDG +Q +LE LEIPYT SG+LASAL+MDK+R+KQV  S G+      ++      +
Sbjct: 81  RGGEDGTMQGLLECLEIPYTGSGVLASALAMDKLRTKQVWQSLGLATPLHAVLGNESDCI 140

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   +  P ++KP   GSS+G+  +     +      +S   +  Q+L+EQ++ G E T
Sbjct: 141 CAATELGFPLIVKPAHEGSSIGMAKVNSVDELIAAWKSAS--TYDSQVLVEQWIQGPEFT 198

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +    L    +  P S FY Y+ KY + ++ + +P  +     +E+++LA  A  AI
Sbjct: 199 VASLRGQVLPPIGLGTPHS-FYDYDAKYLASDTQYRIPCGLGDAQEQELKQLAARACDAI 257

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           G  G +R+D + D    K + LE+N  PGMT  S+ P  A  AG  F++L+L ++ D+  
Sbjct: 258 GIAGWARTDVMQDAQ-GKFWLLEVNTVPGMTDHSLVPMAARAAGLDFQQLVLAILADSVQ 316

Query: 299 LR 300
            R
Sbjct: 317 AR 318


>gi|288556059|ref|YP_003427994.1| D-alanine--D-alanine ligase [Bacillus pseudofirmus OF4]
 gi|288547219|gb|ADC51102.1| D-alanine--D-alanine ligase [Bacillus pseudofirmus OF4]
          Length = 305

 Score =  333 bits (854), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 115/301 (38%), Positives = 176/301 (58%), Gaps = 10/301 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GGIS+EREVSLSSGK   +AL+  G +V  ID        L +L+ DL +  LHG
Sbjct: 3   IAVLYGGISAEREVSLSSGKGIINALKANGHEVIGIDFHPDRLEDLLNLEVDLVYIGLHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG VQA+L++L I Y  SG+  SAL+MDK +SK      G  +    ++ + + D 
Sbjct: 63  RYGEDGKVQALLDMLNINYVGSGVQGSALAMDKAKSKLFFEREGTRIAKQHVLYKHSYDP 122

Query: 121 QH---LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
           +     I  P V+KP + GS++GI   + ++ +   +    ++   + +L+E+++ G E+
Sbjct: 123 ETTAIEIPFPVVVKPNQEGSTIGITFAENEEELLNGI--EEAFKLDETVLLEEFIKGREV 180

Query: 178 TCGVMGD----ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           T  VMG+     +L V EI VPK+ +Y YE KY++  S H++PA++  +    VQ+ A L
Sbjct: 181 TVAVMGNKGREKALPVVEI-VPKNKYYDYEAKYAAGMSEHIVPARLTSEQTDYVQKHAVL 239

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           AHQA+GC   SR DF+          LE+N  PGMTP S++P+ A   G S+ E++   V
Sbjct: 240 AHQALGCDIYSRVDFIVPDDGGAPVILEVNTLPGMTPTSLYPDAAREIGLSYDEMIETFV 299

Query: 294 E 294
           +
Sbjct: 300 Q 300


>gi|116052444|ref|YP_792756.1| D-alanine--D-alanine ligase [Pseudomonas aeruginosa UCBPP-PA14]
 gi|115587665|gb|ABJ13680.1| D-alanine--D-alanine ligase [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 319

 Score =  333 bits (854), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 104/302 (34%), Positives = 161/302 (53%), Gaps = 6/302 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL SG     +L  AG     IDV   +   L   K D AF +LHG
Sbjct: 21  VAVLFGGKSAEREVSLKSGAMVLQSLLAAGVDAFGIDVGEDLLQRLVEEKIDRAFIILHG 80

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118
             GEDG +Q +LE   IPYT SG+LASAL+MDK+R+K+V  S G+P     ++       
Sbjct: 81  RGGEDGSMQGLLECAGIPYTGSGVLASALAMDKLRTKRVWLSLGLPTPDYAVLASEDDCR 140

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           D+   +  P ++KP   GSS+G+  +     +     +++   +  Q+L+EQ++ G E T
Sbjct: 141 DAAQRLGFPLIVKPAHEGSSIGMAKVGGLDELIAAWREAA--RYDSQVLVEQWISGPEFT 198

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +    L    +  P + FY Y+ KY + ++ + +P  +     +E++ L   A  A+
Sbjct: 199 VATLRGQVLPAIRLGTPHT-FYDYDAKYLASDTRYQVPCGLDEAKERELKELTARACDAL 257

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           G +G  R+D + D   R  + LE+N  PGMT  S+ P     AG  F++L+L ++ D+  
Sbjct: 258 GIQGWGRADVMQDAEGR-FWLLEVNTAPGMTDHSLVPMAVRAAGLDFQQLVLAILADSRE 316

Query: 299 LR 300
            R
Sbjct: 317 AR 318


>gi|312959059|ref|ZP_07773578.1| D-alanylalanine synthetase [Pseudomonas fluorescens WH6]
 gi|311286829|gb|EFQ65391.1| D-alanylalanine synthetase [Pseudomonas fluorescens WH6]
          Length = 322

 Score =  332 bits (853), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 106/295 (35%), Positives = 160/295 (54%), Gaps = 6/295 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL SG A  +AL+ AG     IDV       L   K D AF +LHG
Sbjct: 20  VAVLFGGKSAEREVSLKSGNAVLAALQSAGVNAFGIDVGDDFLARLQAEKIDRAFIILHG 79

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--M 118
             GEDG +Q +LE   IPYT SGILASAL+MDK+R+KQV  S G+P     ++      +
Sbjct: 80  RGGEDGSMQGLLECAGIPYTGSGILASALAMDKLRTKQVWHSLGIPTPRHSVLCSEDDCI 139

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   +  P ++KP   GSS+G+  +     +      +S   +  Q+L+EQ++ G E T
Sbjct: 140 SAAKELGLPLIVKPAHEGSSIGMAKVNSAAELIDAWKAAS--TYDSQVLVEQWIQGPEYT 197

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +    L    +  P + FY Y+ KY + ++ + +P  +     +E+  L   A +A+
Sbjct: 198 IATLRGQVLPPIALGTPHT-FYDYDAKYVASDTQYRIPCGLDATKEQELMDLTAKACEAL 256

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           G  G +R+D + D      ++LE+N  PGMT  S+ P  A  AG  F++L+L ++
Sbjct: 257 GIAGWARADVMQDDQGN-FWFLEVNTAPGMTDHSLVPMAARAAGLDFQQLVLAIL 310


>gi|71281200|ref|YP_271111.1| D-alanine--D-alanine ligase [Colwellia psychrerythraea 34H]
 gi|123630929|sp|Q47VR1|DDL_COLP3 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|71146940|gb|AAZ27413.1| D-alanine--D-alanine ligase [Colwellia psychrerythraea 34H]
          Length = 317

 Score =  332 bits (853), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 111/300 (37%), Positives = 165/300 (55%), Gaps = 10/300 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL+SG+A A  LEDAGF V  ID        L   K D  F  LHG
Sbjct: 17  IAVLYGGNSAEREVSLNSGQAIAKGLEDAGFNVVLIDTKVVPLTDLVSNKIDRVFIALHG 76

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117
             GEDG +Q  LE L+IPYT S +L S+LSMDK+RSKQ+  +CG+P  P  +VN+     
Sbjct: 77  RGGEDGCLQGALEYLDIPYTGSNVLGSSLSMDKVRSKQIFKACGIPTAPFTVVNKAEFST 136

Query: 118 ---MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
               +    +    ++KP   GSS+G+   K    +   L++  ++    Q+L+E ++DG
Sbjct: 137 LSLENILADLGGRVMVKPANEGSSIGMAQAKTIAQLRNALIE--AFGFDTQVLLEAWIDG 194

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
            E T  ++GD +L    +  P+ +FY YE KY S ++ +  P  +      E++ L+  A
Sbjct: 195 PEYTVTILGDKALPAIHMETPR-EFYDYEAKYQSTSTQYHCPCGLNERDENEIKSLSMKA 253

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             A G +G  R D +    + +   LE+N  PGMT  S+ P+ A   G +F EL+  +++
Sbjct: 254 FNATGAQGWGRVD-IMRNKTGEWQILEVNTVPGMTETSLVPKAAKVFGLNFSELVTQILQ 312


>gi|307731070|ref|YP_003908294.1| D-alanine/D-alanine ligase [Burkholderia sp. CCGE1003]
 gi|307585605|gb|ADN59003.1| D-alanine/D-alanine ligase [Burkholderia sp. CCGE1003]
          Length = 317

 Score =  332 bits (853), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 102/296 (34%), Positives = 154/296 (52%), Gaps = 11/296 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SG+     L DAG      D        L       AFN LHG
Sbjct: 16  VAVLLGGNSAEREVSLNSGRLVLQGLRDAGVDAHPFDPSERPLAALKEEGFVRAFNALHG 75

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118
            +GE+G +Q  L+   I YT SG+L SAL +DK R+K V    G+P  P   V R     
Sbjct: 76  GYGENGQIQGALDFYGIKYTGSGVLGSALGLDKFRTKLVWQQLGIPTPPFEAVMRGDDYE 135

Query: 119 ----DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD- 173
               D    +  P  +KP   GSS+ +I +K   ++P  L+++    +   +++E+ ++ 
Sbjct: 136 ARAKDIVAKLGLPLFVKPASEGSSVAVIKVKSADALPAALVEAV--KYDRIVVVEKSIEG 193

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           G E T  + GD  L V  I VP  +FY Y  KY + ++ +++P  +  D    ++ LA  
Sbjct: 194 GGEYTACIAGDLDLPVIRI-VPAGEFYDYHAKYIANDTQYLIPCGLTPDEEARMKVLARR 252

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           A   +GC    R+DF+ D      ++LE+N  PGMT  S+ P+ A   G S++EL+
Sbjct: 253 AFDVLGCTDWGRADFMLDA-DGNPYFLEVNTAPGMTDHSLPPKAARAVGISYQELV 307


>gi|190572803|ref|YP_001970648.1| D-alanine--D-alanine ligase [Stenotrophomonas maltophilia K279a]
 gi|190010725|emb|CAQ44334.1| putative D-alanine--D-alanine ligase B [Stenotrophomonas
           maltophilia K279a]
          Length = 320

 Score =  332 bits (853), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 116/298 (38%), Positives = 168/298 (56%), Gaps = 7/298 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG SSEREVSL SG+    AL+  G     +D    +   LA    D  FN+LHG
Sbjct: 20  VAVLLGGTSSEREVSLDSGRNVLEALQSRGVDAFAVDGIPELAKALAAGGIDRVFNILHG 79

Query: 61  --NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
               GEDG+VQ +++   +PYT S +L SALSMDK+R+KQV  S G+P      V+   +
Sbjct: 80  HNGGGEDGIVQGLMDAFGVPYTGSDVLGSALSMDKIRTKQVWLSLGLPTPQYRKVDASNV 139

Query: 119 DS-QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            +    +  P V+KP   GSS+GI  +  D  +   +  ++   +  QLL+EQ V G EL
Sbjct: 140 HALAAELGLPVVVKPANEGSSVGISRVTDDAGLDEAVALAA--RYDGQLLMEQMVVGDEL 197

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           T  ++GD +L    I VPK  +Y Y  KY + ++ ++ P  +     +E++R+A  A +A
Sbjct: 198 TVAILGDVALPSIRI-VPKGQWYDYNAKYIAEDTQYLCP-GLDGGDEEEIRRIALAAFRA 255

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
            GCRG  R D + D  S + F LE+N  PGMT  S+ P+ A  AG SF EL+  ++E 
Sbjct: 256 AGCRGWGRVDVMRDRSSGRFFLLEVNTAPGMTSHSLVPKAAGQAGISFDELVWRVLEQ 313


>gi|330987136|gb|EGH85239.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. lachrymans
           str. M301315]
          Length = 319

 Score =  332 bits (853), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 113/302 (37%), Positives = 165/302 (54%), Gaps = 6/302 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+ER VSL+SG A   AL DAG     IDV       L   K D AF VLHG
Sbjct: 21  VAVLFGGKSAERAVSLNSGNAVLKALLDAGVDAFGIDVGDDFLQRLVSEKIDRAFIVLHG 80

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTM 118
             GEDG +Q +LE LEIPYT SG+LASAL+MDK+R+KQV  S G+      ++      +
Sbjct: 81  RGGEDGTMQGLLECLEIPYTGSGVLASALAMDKLRTKQVWQSLGLATPLHAVLGNESDCI 140

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   +  P ++KP   GSS+G+  +     +      +S   +  Q+L+EQ++ G E T
Sbjct: 141 CAATELGFPLIVKPAHEGSSIGMAKVNSVDELIAAWKSAS--TYDSQVLVEQWIQGPEFT 198

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +    L    +  P S FY Y+ KY + ++ + +P  +     +E+++LA  A  AI
Sbjct: 199 VASLRGQVLPPIGLGTPHS-FYDYDAKYLASDTQYRIPCGLGDAQEQELKQLAARACDAI 257

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           G  G +R+D + D    K + LE+N  PGMT  S+ P  A  AG  F++L+L ++ D+  
Sbjct: 258 GIAGWARTDVMQDAQ-GKFWLLEVNTVPGMTDHSLVPMAARAAGLDFQQLVLAILADSVQ 316

Query: 299 LR 300
            R
Sbjct: 317 AR 318


>gi|90020497|ref|YP_526324.1| D-alanine--D-alanine ligase [Saccharophagus degradans 2-40]
 gi|122996461|sp|Q21MG7|DDL_SACD2 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|89950097|gb|ABD80112.1| D-alanine--D-alanine ligase [Saccharophagus degradans 2-40]
          Length = 314

 Score =  332 bits (853), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 101/293 (34%), Positives = 150/293 (51%), Gaps = 6/293 (2%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62
           VL GG SSEREVSL SG A   AL+  G     +DV       +    PD  F  LHG  
Sbjct: 21  VLFGGTSSEREVSLRSGAAVLQALQAGGVDAHGLDVQADAIAKIEAFAPDRVFIALHGPG 80

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTMDS 120
           GEDG +QA+L+ L IPYT S   ASAL+MDK+++KQV  S G+       +  N      
Sbjct: 81  GEDGKMQAVLDWLAIPYTGSDHAASALAMDKLKTKQVWQSVGLVTPEYASLVENSDWQAV 140

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +     +KP   GSS+G+ V+   Q +     +++  ++  ++L+E+ + G E T  
Sbjct: 141 LDSLGGQGFVKPAHEGSSIGMSVVSTAQELKAAYEKAA--HYDAKVLVERRIVGREFTVA 198

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V+   +L    +      FY Y+ KY S  + ++ P  +  +   E+Q +A  A  A+GC
Sbjct: 199 VLNGVALPAIGLKTDHV-FYDYDAKYVSNTTQYLCPCGLTQEKEAELQSIAQQAFAAVGC 257

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +G  R DF+ D      + LE+N  PGMT  S+ P  A  +G  F EL+L ++
Sbjct: 258 KGWGRVDFMQDEAGN-FYLLEVNTVPGMTDHSLVPMAARQSGIEFNELVLEIL 309


>gi|113869224|ref|YP_727713.1| D-alanine--D-alanine ligase [Ralstonia eutropha H16]
 gi|123133594|sp|Q0K6M6|DDL_RALEH RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|113528000|emb|CAJ94345.1| D-Alanine-D-Alanine ligase [Ralstonia eutropha H16]
          Length = 327

 Score =  332 bits (853), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 96/303 (31%), Positives = 169/303 (55%), Gaps = 10/303 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VL+GG S+ERE+SL SG    +AL+  G      D        LA    D  F  LHG
Sbjct: 17  VGVLLGGRSAEREISLMSGNGVLAALQSRGVDAHGFDPGLQSVAELAAAGFDRVFIALHG 76

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--M 118
            +GEDG +Q +LE L +PYT SG+LASA++MDK  +K++  + G+      +++  T   
Sbjct: 77  RYGEDGTIQGLLEQLGVPYTGSGVLASAMAMDKQATKRLWMTYGLATPRFAMLHADTDFD 136

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                +  P ++KP + GSS+G+  +     +     ++++ ++   ++ E ++DG ELT
Sbjct: 137 AVAADLGLPLIVKPAREGSSIGLTKVTAADQMRAAFEKAAALDND--VIAETFIDGAELT 194

Query: 179 CGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
           C ++G+     +L V  I  P+++ Y Y+ KY + ++ ++ P+ +  ++ +EV+ LA  +
Sbjct: 195 CPIVGEGDSAEALPVIRIVAPEAN-YDYQNKYFTDDTQYLCPSGLDPEVEREVRALAVQS 253

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           ++ +GCRG +R+D +      K F LE+N  PGMT  S+ P  A   G S+ + ++ +V 
Sbjct: 254 YRVLGCRGWARADLMLRA-DGKPFLLEMNTSPGMTGHSLVPMAARAVGISYEDFVMQVVA 312

Query: 295 DAS 297
            A+
Sbjct: 313 AAT 315


>gi|330888570|gb|EGH21231.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. mori str.
           301020]
          Length = 319

 Score =  332 bits (853), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 113/302 (37%), Positives = 165/302 (54%), Gaps = 6/302 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+ER VSL+SG A   AL DAG     IDV       L   K D AF VLHG
Sbjct: 21  VAVLFGGKSAERAVSLNSGNAVLEALLDAGVDAFGIDVGDDFLQRLVSEKIDRAFIVLHG 80

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTM 118
             GEDG +Q +LE LEIPYT SG+LASAL+MDK+R+KQV  S G+      ++      +
Sbjct: 81  RGGEDGTMQGLLECLEIPYTGSGVLASALAMDKLRTKQVWQSLGLATPLHAVLGNESDCI 140

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   +  P ++KP   GSS+G+  +     +      +S   +  Q+L+EQ++ G E T
Sbjct: 141 CAATELGFPLIVKPAHEGSSIGMAKVNSVDELIAAWKAAS--TYDSQVLVEQWIQGPEFT 198

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +    L    +  P S FY Y+ KY + ++ + +P  +     +E+++LA  A  AI
Sbjct: 199 VASLRGQVLPPIGLGTPHS-FYDYDAKYLASDTQYRIPCGLGDAQEQELKQLAARACDAI 257

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           G  G +R+D + D    K + LE+N  PGMT  S+ P  A  AG  F++L+L ++ D+  
Sbjct: 258 GIAGWARTDVMQDAQ-GKFWLLEVNTVPGMTDHSLVPMAARAAGLDFQQLVLAILADSVQ 316

Query: 299 LR 300
            R
Sbjct: 317 AR 318


>gi|312621719|ref|YP_004023332.1| d-alanine/d-alanine ligase [Caldicellulosiruptor kronotskyensis
           2002]
 gi|312202186|gb|ADQ45513.1| D-alanine/D-alanine ligase [Caldicellulosiruptor kronotskyensis
           2002]
          Length = 364

 Score =  332 bits (853), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 97/345 (28%), Positives = 174/345 (50%), Gaps = 51/345 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +AVL GG+S+E E+S+ S K+    ++   +++  I + +    +L   K          
Sbjct: 6   VAVLFGGVSTEHEISIVSAKSIMQNMDKEKYEIIPIGITKEGKWLLYTGKIEDLDSKWTQ 65

Query: 52  -----------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
                                        D+ F VLHG  GEDG VQ +LEL  IPY   
Sbjct: 66  FSIECFISPDRTKKALVKIKDNEATFIDIDVVFPVLHGLNGEDGTVQGLLELSGIPYVGC 125

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPL 133
           G+L+SA+ MDK  +K++    G+P    ++V +    +         +   S P  +KP 
Sbjct: 126 GVLSSAICMDKAFAKKLALLEGIPQGHFLVVYKNEYSAKKDYFIRRIESEFSYPVFVKPA 185

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
             GSS+GI   K  + + L + +  ++ +  ++LIEQ ++  E+ C V+G+  + V+E  
Sbjct: 186 NSGSSVGISKAKDREDLVLAIHE--AFLYDTKILIEQAINAREIECAVLGNDEVFVSEPG 243

Query: 194 --VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
             +P  +FYSYE KY   +S  ++PA++P ++ +E++ LA   ++   C G++R DF  D
Sbjct: 244 EIIPSREFYSYEAKYIDNSSELIIPARLPKEVTEEIKDLAARIYKIFECCGMARVDFFVD 303

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             + KV++ EIN  PG T +S++P++  ++   + +L+  ++  A
Sbjct: 304 KDTNKVYFNEINTIPGFTSISMYPKLMEFSSIPYSQLIDKLISLA 348


>gi|297528575|ref|YP_003669850.1| D-alanine/D-alanine ligase [Geobacillus sp. C56-T3]
 gi|297251827|gb|ADI25273.1| D-alanine/D-alanine ligase [Geobacillus sp. C56-T3]
          Length = 367

 Score =  332 bits (853), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 95/347 (27%), Positives = 159/347 (45%), Gaps = 54/347 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           + VL GG S E +VSLS+  A  +A++   F V  I +      +               
Sbjct: 5   VGVLYGGKSPEHQVSLSTAMAVMNAIDPHKFDVIPIYITPEGQWIKGEQLTGPIEEIKQL 64

Query: 50  -----------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYT 80
                                          D+ F +LHG  GEDG VQ +LE+L IPY 
Sbjct: 65  QFTSAATALIPVSLNQVPAADSAAGGNEETIDVIFPLLHGPNGEDGTVQGLLEILNIPYV 124

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIK 131
            +G+LASA+ MDK+  K + +  G+     I V ++             +  +  P  +K
Sbjct: 125 GNGVLASAVGMDKVMMKNLFAQAGLRQAKYIAVTKYDWQKSGETVYDRIERELGYPCFVK 184

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--DV 189
           P   GSS+GI   K+   +    ++  ++ +  +++IE+ + G E+  GV+G+      V
Sbjct: 185 PANAGSSVGISKCKQRGDLKAAFIE--AFKYDRKIIIEEAIVGREIEIGVIGNDEPICSV 242

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
               VPK +FY YE KY    +  ++PA +  + Y+ ++++A  A QA+   G++R DF 
Sbjct: 243 VGEIVPKKEFYDYEAKYEDGQTELIIPADVTKEQYETIKQMAITAFQALDLSGLARVDFF 302

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                  V+  E+N  PG TP S+FP +  ++G  + EL+  ++  A
Sbjct: 303 L-AEDGAVYINEVNTMPGFTPYSMFPLLWQHSGVPYPELIERLIALA 348


>gi|237755501|ref|ZP_04584122.1| D-alanine--D-alanine ligase B [Sulfurihydrogenibium yellowstonense
           SS-5]
 gi|237692325|gb|EEP61312.1| D-alanine--D-alanine ligase B [Sulfurihydrogenibium yellowstonense
           SS-5]
          Length = 300

 Score =  332 bits (853), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 99/299 (33%), Positives = 164/299 (54%), Gaps = 8/299 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---DRSVGLVLAHLKPDLAFNV 57
           +A+L GG S ERE+S+ SGKA   AL   G+     D+   D+ +  +L   KPDLAF V
Sbjct: 4   IALLYGGYSREREISIKSGKAVEKALNQLGYTYKVFDIIERDKFIKEIL-EYKPDLAFIV 62

Query: 58  LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117
           LHG  GEDG +QAILE L IPYT S +  S ++MDK+ +K  + + G+P    I      
Sbjct: 63  LHGKGGEDGTIQAILEFLGIPYTGSDMKTSVIAMDKVLTKMYLKNFGIPTPDWIFFTEEK 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
               +    P V+K    GSS+G+ ++   Q     + +   ++  D++L+E+++ G EL
Sbjct: 123 EALNYRPDFPVVVKAPTEGSSIGVYIVNNQQEYENAVKEV--FDLDDKVLVEKFIKGREL 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           T  ++ D   D+ E+ V +  FY +  KY +  + ++ PA++  D+YK +Q L    ++ 
Sbjct: 181 TVSILDDEVFDIVEVVVSE-GFYDFNNKYITGKTQYICPAQLDEDVYKNIQDLGHKVYKL 239

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           + C+G +R D +          LE+N  PGMT  S+ P+ A   G +F +L+  +++++
Sbjct: 240 LNCKGPARVDIIL-ENDNNPHVLEVNTIPGMTEFSLLPKAALARGITFIQLVEKIIKNS 297


>gi|119897177|ref|YP_932390.1| D-alanine--D-alanine ligase [Azoarcus sp. BH72]
 gi|190359112|sp|A1K3U8|DDL_AZOSB RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|119669590|emb|CAL93503.1| probable D-alanine-D-alanine ligase [Azoarcus sp. BH72]
          Length = 304

 Score =  332 bits (852), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 104/298 (34%), Positives = 157/298 (52%), Gaps = 6/298 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+ER+VSL SG A  +AL+ AG      D       +L     D  F  LHG
Sbjct: 8   VAVLFGGSSAERDVSLMSGAAVLAALQGAGVDAHAFDPAERDLHILKEEGYDRVFIALHG 67

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN-RFTMD 119
             GEDG VQ  LEL+ IPYT SG++ASAL+MDK R+K V  SCG+P     +++     D
Sbjct: 68  RGGEDGTVQGALELMGIPYTGSGVMASALAMDKWRTKMVWLSCGLPTPRYAILDADSDFD 127

Query: 120 S-QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           +    +  P  +KP+  GSS+G   + +   +      ++   +   ++ E+++ G ELT
Sbjct: 128 AIARDLGLPIFVKPVHEGSSMGATKVTEAGQLRAAWELAA--RYDSLVIAEEFISGQELT 185

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              + D +L +  I  P  + Y Y+ KY + ++ +  P  +P    + +Q L   + + +
Sbjct: 186 APFLDDRALPLVRIVAPDGN-YDYQHKYFTDDTRYDCPCGLPQAEEEALQALILKSARVL 244

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           GCRG  R+D +  P  R  + LE+N  PGMT  S+ P  A  AG SF  L L ++  A
Sbjct: 245 GCRGWGRADLILTPEGR-PYLLEMNTSPGMTGHSLVPMSARVAGMSFEALCLAILAGA 301


>gi|294338820|emb|CAZ87154.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetase B)
           (D-Ala-D-Ala ligase B) [Thiomonas sp. 3As]
          Length = 378

 Score =  332 bits (852), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 104/303 (34%), Positives = 160/303 (52%), Gaps = 9/303 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG+S+EREVSL SGK   +AL+  G      D        L       AF  LHG
Sbjct: 15  VAVLMGGLSAEREVSLMSGKGVLAALQSRGVDAFAFDPSVDDLAALKSFGAQRAFINLHG 74

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--FTM 118
            +GEDG VQ  LELL IPYT  G+LASAL++DK  +K++     +       V       
Sbjct: 75  RWGEDGTVQGALELLGIPYTGPGVLASALAIDKAMTKRLWHFENLSTPKWREVGTLIEAR 134

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   +  P + K    GS+LG+     +  +    L+++ +    ++L+EQ+++G E+T
Sbjct: 135 AAAAELGFPLIFKATHEGSTLGLKRADSEAEVQAAYLEAARF--DSRVLVEQFIEGDEVT 192

Query: 179 CGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
           C V+G      +L +  I  P    Y YE KY S ++ ++ P+++P D    +Q L   +
Sbjct: 193 CAVIGAGDQARALPLIRIVAP-GGNYDYEHKYFSDDTRYICPSELPADEEARIQDLVLRS 251

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           ++ +GCRG +R+D +     R+ F LEIN  PGMT  S+ P  A  AG  + +L L ++ 
Sbjct: 252 YRTLGCRGWARADVMIRATDRQPFLLEINTSPGMTSHSLVPMAARVAGLEYADLCLLILS 311

Query: 295 DAS 297
            A+
Sbjct: 312 MAA 314


>gi|229918692|ref|YP_002887338.1| D-alanine/D-alanine ligase [Exiguobacterium sp. AT1b]
 gi|229470121|gb|ACQ71893.1| D-alanine/D-alanine ligase [Exiguobacterium sp. AT1b]
          Length = 308

 Score =  332 bits (852), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 127/304 (41%), Positives = 181/304 (59%), Gaps = 12/304 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG+S EREVSL+SG+    AL + G +V+ ID        L  L  D+  + LHG
Sbjct: 3   VAVLYGGVSGEREVSLTSGQGMIEALTERGHEVTAIDFHPERANELLTLDVDVVVSALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG VQ++LE+  IPYT SG+LASAL+MDK R+K + ++ G+ V   +L+       
Sbjct: 63  KYGEDGRVQSLLEMAGIPYTGSGVLASALAMDKARAKIIFAASGIRVARDVLIESRESID 122

Query: 121 QHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
             +    +  P V+KP + GSS G+ +   +  +   +    ++     +L+EQY+ G E
Sbjct: 123 AKVAEWGMEFPCVVKPAQEGSSNGLTIAMDEAMLREGI--EKAFACDSAVLVEQYIKGKE 180

Query: 177 LTCGVMGD----ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
           LT  V+G+     +L V EI +PK++FY YE KY+   S HV PA+I  D+  EVQ+ A 
Sbjct: 181 LTVPVIGNFGKEEALPVIEI-IPKNEFYDYESKYTEGGSIHVCPAEISDDLTSEVQQAAV 239

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           LAH+A+GC G SRSDFL      K + LE N  PGMTP+S+FP+ A   G S+ ELL   
Sbjct: 240 LAHRALGCSGYSRSDFLVSE-EGKAYILETNTLPGMTPLSLFPDSAKTVGISYGELLERF 298

Query: 293 VEDA 296
           +E A
Sbjct: 299 IELA 302


>gi|219668748|ref|YP_002459183.1| D-alanyl-alanine synthetase A [Desulfitobacterium hafniense DCB-2]
 gi|219539008|gb|ACL20747.1| D-alanine/D-alanine ligase [Desulfitobacterium hafniense DCB-2]
          Length = 361

 Score =  332 bits (852), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 100/343 (29%), Positives = 164/343 (47%), Gaps = 52/343 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS------------------- 41
           + +L GG S E EVSL+S  +   A++   +++  I + ++                   
Sbjct: 6   IIILFGGQSGEHEVSLNSASSVLKAIDQEKYEIETIGIAKNGQWHWGIRPEQWQQDPALE 65

Query: 42  -VGLVLAHL------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
            + ++LAH                   K  L F VLHG FGEDG +Q + E+  IPY  S
Sbjct: 66  GIPVILAHDPTNPRFIALDGSSLPQDGKFALIFPVLHGPFGEDGTIQGLFEMANIPYAGS 125

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPL 133
           G+L SAL MDK R K V +  G+P  P I V R  +         + +H +  P  +KP 
Sbjct: 126 GVLGSALGMDKDRMKAVFTEAGLPQAPYITVLRTMLQKPMEQLLDNIEHSLGYPCFVKPA 185

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS--LDVTE 191
             GSS+GI   +  + +   L  ++   +  +L++EQ + G E+   V+G+      +  
Sbjct: 186 NLGSSVGISKARNREELIQALQLAA--EYDRKLVVEQNIVGREIELSVLGNEDAQASIPG 243

Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
             +P  DFY YE KY    S  V+PA +  ++ + +Q  A  A +A+   G+SR DF   
Sbjct: 244 EILPAKDFYDYEAKYIDTGSQLVIPAPLAPEVVRSLQEKAVAAFKAVEACGLSRVDFFVT 303

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
               +++  EIN  PG T +S++P++   +G  + EL+  ++E
Sbjct: 304 E-GGQIYINEINTMPGFTQISMYPKLWEASGIPYTELITRLIE 345


>gi|317489232|ref|ZP_07947749.1| D-alanine-D-alanine ligase [Eggerthella sp. 1_3_56FAA]
 gi|325832243|ref|ZP_08165242.1| D-ala D-ala ligase N-terminal domain protein [Eggerthella sp. HGA1]
 gi|316911633|gb|EFV33225.1| D-alanine-D-alanine ligase [Eggerthella sp. 1_3_56FAA]
 gi|325486079|gb|EGC88533.1| D-ala D-ala ligase N-terminal domain protein [Eggerthella sp. HGA1]
          Length = 313

 Score =  332 bits (852), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 118/304 (38%), Positives = 176/304 (57%), Gaps = 12/304 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-DRSVGLVLAHLKPDLAFNVLH 59
           +A+L GG S EREVSL+S +    ALE+AG+ V+Q+D  D+     L     D+AF  LH
Sbjct: 12  VALLAGGKSGEREVSLASAEGAREALEEAGYTVTQLDPADKEDLKRLIDGPFDVAFLCLH 71

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT-- 117
           G +GEDG VQ +LE + +PY  SG+ +SAL+MDK++SK      G+P  PS+ + +    
Sbjct: 72  GKYGEDGTVQGLLETIGLPYIGSGVWSSALAMDKVKSKLYYEQAGIPTPPSVPLQKGDSY 131

Query: 118 --MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175
                   +    V+KP   GS+LG+ +++   +I   +    +++   ++L+E+Y+ G 
Sbjct: 132 DVDSIVEKLGTHCVVKPGTEGSALGVFIVEGAAAIGEAI--EKAFDIDSEVLVERYIKGK 189

Query: 176 ELTCGVMGD---ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
           ELT  V+GD    +L + EI VPKSDFY +E KY+   S H+ PA +  +  + VQ LA 
Sbjct: 190 ELTVAVIGDAEVEALPIIEI-VPKSDFYDFESKYAPGGSQHLCPAPLSDETTRMVQELAV 248

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
            AH+A+ C G+SRSDF+        + LE N  PGMT  S+ P+ A  AG SF EL   +
Sbjct: 249 RAHRALSCEGVSRSDFIL-EEDGSCWTLETNTIPGMTGTSLLPDAARAAGISFPELCTRL 307

Query: 293 VEDA 296
           +  A
Sbjct: 308 IGYA 311


>gi|171462989|ref|YP_001797102.1| D-alanine--D-alanine ligase [Polynucleobacter necessarius subsp.
           necessarius STIR1]
 gi|229485972|sp|B1XT11|DDL_POLNS RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|171192527|gb|ACB43488.1| D-alanine--D-alanine ligase [Polynucleobacter necessarius subsp.
           necessarius STIR1]
          Length = 337

 Score =  332 bits (852), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 103/299 (34%), Positives = 157/299 (52%), Gaps = 9/299 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VL+GG S ERE+SL SG     AL   G      D        L   K D  F  LHG
Sbjct: 30  VGVLLGGKSGEREISLMSGNGVLEALRSKGVDAHAFDAGLRCPTELVKEKFDRIFISLHG 89

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTM 118
            FGEDG +Q +LELL +PYT S +LASAL++DK+ +KQV  S G+       +       
Sbjct: 90  RFGEDGTIQGLLELLGLPYTGSAVLASALAIDKIVTKQVWISNGLATPEYEELTATSDWN 149

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                +  P ++KP   GSSLG+  +K  + +P     ++      +++ E  + G ELT
Sbjct: 150 AVVQHLGLPLIVKPAHEGSSLGLTKVKSVEELPAAYKLAA--GLDKKVIAETCIIGDELT 207

Query: 179 CGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
           C ++G      +L V +I  P+++ Y +  KY S  + ++ P  +  ++   VQ LA  A
Sbjct: 208 CPLVGQGKTAEALPVIKIIPPQAN-YDFHNKYFSDETQYLCPTGLAPEVNAAVQTLALAA 266

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           ++A+GCR   R+D + D  + K + LE+N  PGMT  S+ P  A  AG  + +L+LW++
Sbjct: 267 YKALGCRTWGRADVMLDQKTGKPYLLEMNTSPGMTSHSLVPMAAKAAGIEYADLVLWLL 325


>gi|239813928|ref|YP_002942838.1| D-alanine--D-alanine ligase [Variovorax paradoxus S110]
 gi|239800505|gb|ACS17572.1| D-alanine/D-alanine ligase [Variovorax paradoxus S110]
          Length = 323

 Score =  332 bits (852), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 101/307 (32%), Positives = 161/307 (52%), Gaps = 13/307 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+ERE+SL SG     AL   G      D      + L        F  LHG
Sbjct: 12  VAVLFGGSSAEREISLLSGNGVLEALRSRGVDAHAFDPAERDLVELRREGFARCFIALHG 71

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV------N 114
             GEDG VQ  LELL IPYT SG++AS+++MDK+ +K++  + G+P    + +       
Sbjct: 72  RHGEDGTVQGALELLGIPYTGSGVMASSVAMDKVMTKRIWQADGLPTPRYVRLAFDQQSR 131

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
                   ++  P ++KP + GSS+G+  ++    +   +  S+ ++    +L E++++G
Sbjct: 132 EQVRAVPDVLGLPLIVKPPREGSSIGVTKVEGYSQMQDAVTLSARYDAD--VLCEEFIEG 189

Query: 175 IELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            E+TC V+G      +L V  IA P+   Y Y+ KY + +  +  P+ +P     E+QR+
Sbjct: 190 EEVTCAVLGQGLDARALPVVRIAAPE-GAYDYQNKYFTDDVKYHCPSGLPEAEEHEIQRI 248

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
              A+  +GCRG  R+D +     RK F LE+N  PGMT  S+ P  A  +G ++ +L L
Sbjct: 249 TLAAYHTLGCRGWGRADVMIRASDRKPFLLEMNTSPGMTSHSLVPMSARASGIAYEDLCL 308

Query: 291 WMVEDAS 297
            ++  AS
Sbjct: 309 RVLASAS 315


>gi|77460892|ref|YP_350399.1| D-alanine--D-alanine ligase [Pseudomonas fluorescens Pf0-1]
 gi|123603343|sp|Q3K746|DDL_PSEPF RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|77384895|gb|ABA76408.1| D-alanine--D-alanine ligase B [Pseudomonas fluorescens Pf0-1]
          Length = 324

 Score =  332 bits (852), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 108/295 (36%), Positives = 164/295 (55%), Gaps = 6/295 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG+S+EREVSL SG A  +AL+ AG     IDV   +   L   K D AF +LHG
Sbjct: 20  VAVLFGGLSAEREVSLKSGNAVLTALQSAGVDAFGIDVGADILQRLLSEKIDRAFIILHG 79

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--M 118
             GEDG +Q +LE+  IPYT SGILASAL+MDK+R+KQV  + G+P     ++      +
Sbjct: 80  RGGEDGSMQGLLEVAGIPYTGSGILASALAMDKLRTKQVWHTLGIPTPRHAVLRSEADCI 139

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   +  P ++KP   GSS+G+  +     +      +S   +  Q+L+EQ++ G E T
Sbjct: 140 SAATELGFPLIVKPAHEGSSIGMAKVSSASELIDAWKAAS--TYDSQVLVEQWIHGPEFT 197

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              + D  L    +  P + FY Y+ KY + ++ + +P  +     KE+  L   A +A+
Sbjct: 198 IATLRDQVLPPIALGTPHT-FYDYDAKYIANDTQYRIPCGLDAAKEKELMDLTAQACEAL 256

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           G  G  R+D + D    K ++LE+N  PGMT  S+ P  A  AG  F++L+L ++
Sbjct: 257 GIAGWGRADVMQDA-DGKFWFLEVNTAPGMTDHSLVPMAAKAAGLDFQQLVLAIL 310


>gi|308048070|ref|YP_003911636.1| D-alanine--D-alanine ligase [Ferrimonas balearica DSM 9799]
 gi|307630260|gb|ADN74562.1| D-alanine--D-alanine ligase [Ferrimonas balearica DSM 9799]
          Length = 306

 Score =  332 bits (852), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 101/299 (33%), Positives = 151/299 (50%), Gaps = 12/299 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL SG A  + L+  G      D        L     D AF VLHG
Sbjct: 10  VAVLFGGTSAEREVSLRSGAAVLAGLQRGGVDAHPFDPAERSLDELK--GFDRAFIVLHG 67

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR----- 115
             GEDG VQ  LEL++IPYT S +L  A++MDK+R+K + +  G+P     +V++     
Sbjct: 68  RGGEDGTVQGALELMKIPYTGSRVLGCAVAMDKVRTKWLWAGLGLPTADFEVVDKESFSP 127

Query: 116 -FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
               D    +  P ++KP   GSS+G+   +   S+   +  +    + D +L+E +V G
Sbjct: 128 NSAEDIMARLGSPVMVKPACEGSSIGMAKAEDAASLQKAIDTAL--QYDDTVLVEAWVHG 185

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
            E T  ++G+ +L    +  P   FY YE KY S  + +  PA +  D  + ++ LA  A
Sbjct: 186 PEFTVSILGEEALPAIRMETPNV-FYDYEAKYQSQTTQYHCPAGLSDDDEQALRALALRA 244

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            +A+G  G  R D + D        LE+N  PGMT  S+ P+ A   G  F  L+  ++
Sbjct: 245 FKAVGASGWGRVDVMRDA-DGSWRLLEVNTVPGMTETSLVPKAANAVGVDFDTLVARIL 302


>gi|298488537|ref|ZP_07006567.1| D-alanine--D-alanine ligase [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
 gi|298156878|gb|EFH97968.1| D-alanine--D-alanine ligase [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
          Length = 319

 Score =  332 bits (852), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 113/302 (37%), Positives = 165/302 (54%), Gaps = 6/302 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+ER VSL+SG A   AL DAG     IDV       L   K D AF VLHG
Sbjct: 21  VAVLFGGKSAERAVSLNSGNAVLKALLDAGVDAFGIDVGDDFLQRLVSEKIDRAFIVLHG 80

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTM 118
             GEDG +Q +LE LEIPYT SG+LASAL+MDK+R+KQV  S G+      ++      +
Sbjct: 81  RGGEDGSMQGLLECLEIPYTGSGVLASALAMDKLRTKQVWQSLGLATPLHAVLGNESDCI 140

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   +  P ++KP   GSS+G+  +     +      +S   +  Q+L+EQ++ G E T
Sbjct: 141 CAATELGFPLIVKPAHEGSSIGMAKVNSVDELIAAWKAAS--TYDSQVLVEQWIQGPEFT 198

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +    L    +  P S FY Y+ KY + ++ + +P  +     +E+++LA  A  AI
Sbjct: 199 VASLRGQVLPPIGLGTPHS-FYDYDAKYLASDTQYRIPCGLGDAQEQELKQLAARACDAI 257

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           G  G +R+D + D    K + LE+N  PGMT  S+ P  A  AG  F++L+L ++ D+  
Sbjct: 258 GIAGWARTDVMQDAQ-GKFWLLEVNTVPGMTDHSLVPMAARAAGLDFQQLVLAILADSVQ 316

Query: 299 LR 300
            R
Sbjct: 317 AR 318


>gi|134299650|ref|YP_001113146.1| D-alanine--D-alanine ligase [Desulfotomaculum reducens MI-1]
 gi|190359127|sp|A4J5G8|DDL_DESRM RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|134052350|gb|ABO50321.1| D-alanine--D-alanine ligase [Desulfotomaculum reducens MI-1]
          Length = 312

 Score =  332 bits (851), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 110/310 (35%), Positives = 179/310 (57%), Gaps = 19/310 (6%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGF-KVSQIDVDRSVGLVLAHLKPDLAFNVLH 59
           + VL GG S+EREVSL SG+A   AL  AG+  V +IDV   +   L   +  +AF  LH
Sbjct: 5   IGVLCGGRSAEREVSLRSGEAVYQALMAAGYNDVVKIDVGYDLVEQLKGNEIQVAFLALH 64

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G +GEDG +Q +LE+L+IPYT SG+LASAL+++K+ +K++    G+P     ++ +  ++
Sbjct: 65  GKYGEDGTIQGLLEMLDIPYTGSGVLASALAINKIATKKIFKMEGIPTPAFSVITKKEVE 124

Query: 120 SQHL----------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            + L          +  P V+K    GS++GI  +   + +       S+  +   +L+E
Sbjct: 125 DKSLQEAALRAIKEVGVPAVVKANTQGSTIGITFVHVKEKM--AEAIESALKYDQDVLVE 182

Query: 170 QYVDGIELTCGVMGD---ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE 226
           Q+V G E+T  V+G+    +L + EI    +  Y Y+ KY+   S H++P ++P DI ++
Sbjct: 183 QFVAGTEVTASVLGNNSPEALPLIEI-TSVTGVYDYQSKYTPGMSDHIIPPRLPQDIQEK 241

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           ++ LA  +  ++GCRG+ R DF+      + + LE+N  PGMT  S+FP+ A YAG SF 
Sbjct: 242 IKELAIKSFLSLGCRGLGRIDFIIR--DNQPYALEVNTLPGMTATSLFPDAANYAGISFP 299

Query: 287 ELLLWMVEDA 296
           EL   +++ A
Sbjct: 300 ELTDRLIKLA 309


>gi|284008382|emb|CBA74791.1| D-alanine--D-alanine ligase [Arsenophonus nasoniae]
          Length = 300

 Score =  332 bits (851), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 104/302 (34%), Positives = 166/302 (54%), Gaps = 13/302 (4%)

Query: 4   LMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFG 63
           L+GG S+EREVSL SG A  + L DAG     +D+     + L     +  F  LHG  G
Sbjct: 2   LLGGNSAEREVSLQSGDAVVNGLRDAGIAAYPVDIKDFAVIKLKEAGYNKVFIALHGRGG 61

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM----- 118
           EDG VQ +LE L +PYT SG+LAS+LSMDK+R+KQ+ +  G+P+ P I +++  +     
Sbjct: 62  EDGTVQGVLEFLGLPYTGSGVLASSLSMDKLRTKQLWAGIGLPIAPYIALDKQQLAMMSD 121

Query: 119 ----DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
               +S   +  P ++KP   GSS+G+  +     +   +    ++ +   +LIE++++G
Sbjct: 122 EMLFESVCHLGLPLIVKPSLEGSSVGMSKVTTLSELR--IALEFAFRYDKDVLIEKWLNG 179

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
            E T  ++G+  L    I  P   FY Y+ KY S  + +  P+ +  +  +++ +LA  A
Sbjct: 180 PEYTVAIVGEQVLPSIRIQ-PVGVFYDYDAKYLSNETQYFCPSGLKAEEEEQLNKLALAA 238

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           ++A+GC G  R D + D      + LEIN  PGMT  S+ P  A  AG +F +L+  ++E
Sbjct: 239 YKAVGCAGWGRVDVMRDN-DGVFYLLEINTSPGMTGHSLVPMAAKQAGMTFSQLVKKILE 297

Query: 295 DA 296
            A
Sbjct: 298 LA 299


>gi|238791174|ref|ZP_04634813.1| D-alanine--D-alanine ligase [Yersinia intermedia ATCC 29909]
 gi|238729307|gb|EEQ20822.1| D-alanine--D-alanine ligase [Yersinia intermedia ATCC 29909]
          Length = 289

 Score =  332 bits (851), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 98/291 (33%), Positives = 153/291 (52%), Gaps = 13/291 (4%)

Query: 15  SLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILEL 74
           SL SG+A  + L +AG     ID        L     D  F  LHG  GEDG +Q +LE 
Sbjct: 2   SLLSGQAVLAGLREAGIDAHGIDTKDFPVTQLKEQGFDKVFIALHGRGGEDGTLQGVLEF 61

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ---------HLIS 125
           L++PYT SG++ASAL+MDK+R+K V  + G+P+ P I +NR   ++            + 
Sbjct: 62  LQLPYTGSGVMASALTMDKLRTKLVWQASGLPISPYIALNRQQFETLSSVELMACVAKLG 121

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            P ++KP   GSS+G+  + +   +   L    ++ H   +LIE+++ G E T  ++GD 
Sbjct: 122 LPLIVKPSHEGSSVGMSKVDQADQLHGAL--EEAFRHDSDVLIEKWLSGPEYTVAILGDN 179

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
            L    I  P   FY YE KY S  + +  P+ +  ++ +++  L+  A+QA+GC G  R
Sbjct: 180 VLPSIRIQAP-GVFYDYEAKYLSDETQYFCPSGLSDELEQQLATLSLQAYQALGCSGWGR 238

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            D + D      + LE+N  PGMT  S+ P  A  +G SF +L+  ++  A
Sbjct: 239 VDVMQD-SDGNFYLLEVNTSPGMTSHSLVPMAARQSGLSFSQLVARILTLA 288


>gi|83312950|ref|YP_423214.1| D-alanine--D-alanine ligase [Magnetospirillum magneticum AMB-1]
 gi|123540758|sp|Q2W0H0|DDL_MAGSA RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|82947791|dbj|BAE52655.1| D-alanine-D-alanine ligase and related ATP-grasp enzyme
           [Magnetospirillum magneticum AMB-1]
          Length = 305

 Score =  332 bits (851), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 140/306 (45%), Positives = 195/306 (63%), Gaps = 12/306 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL---KPDLAFNV 57
           + VLMGG S+ER+VSL SG A A ALE AGF+V+ +D DR+   ++  +   +PD+ FN 
Sbjct: 5   VTVLMGGASAERDVSLRSGAAAAKALEQAGFEVALVDCDRNPAELVRAITETRPDVVFNA 64

Query: 58  LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117
           LHG FGEDG VQ +L LL +PYTHSG+LASA +MDK  ++ + +S G+PV    ++ R  
Sbjct: 65  LHGRFGEDGCVQGVLNLLGVPYTHSGLLASAAAMDKAFARALFASAGIPVAEGRVITRTD 124

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            +    +  P+V+KPL  GSS+G+ +++ +Q  PL       ++  D++L+E ++ G EL
Sbjct: 125 RNGPDPLPRPFVVKPLNEGSSVGVFIVRDNQPSPL---PDWPFD-ADEVLVESFIPGREL 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           T  VMGD +L V EI      FY YE KY+   S H++PA IP   Y E  RLA  AH+A
Sbjct: 181 TAAVMGDRALGVLEI-TSDHGFYDYEAKYAPGGSRHLMPAPIPEADYAEACRLAVAAHKA 239

Query: 238 IGCRGISRSDFLFDPL--SRKV--FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +GCRG+SR+D  +D     +      LE+N QPGMT  S+ PEMAAY G +F EL+ WMV
Sbjct: 240 LGCRGVSRADLRYDDTVPGQPPRLVMLEVNTQPGMTATSLVPEMAAYQGITFPELVRWMV 299

Query: 294 EDASCL 299
           E+A C 
Sbjct: 300 EEARCD 305


>gi|227824970|ref|ZP_03989802.1| conserved hypothetical protein [Acidaminococcus sp. D21]
 gi|226905469|gb|EEH91387.1| conserved hypothetical protein [Acidaminococcus sp. D21]
          Length = 312

 Score =  332 bits (851), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 105/306 (34%), Positives = 171/306 (55%), Gaps = 13/306 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSV-GLVLAHLKPDLAFNVLH 59
           + V+MGG S EREVSL++G A   AL++ G+    ID+D S+    +      + FN +H
Sbjct: 7   IGVVMGGPSKEREVSLNTGSAIVEALKEKGYDAVPIDLDPSLFPSQIEDAGVKVVFNAVH 66

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT-- 117
           G +GEDG +QA+LE+L +PYT SG+L+SA++M+K  +K++  + GV     + +      
Sbjct: 67  GLYGEDGRLQAVLEMLGVPYTGSGVLSSAIAMNKFYTKRMFEANGVKTANCLYLTDKDRQ 126

Query: 118 ---MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
               D    +  P V+KP + GSS+G+ ++KK++ +   L    ++++G  +L E +  G
Sbjct: 127 TAKQDIIRKLGIPCVVKPAEQGSSIGVTIVKKEEDLDKAL--EEAFSYGKLVLAEAFFTG 184

Query: 175 IELTCGVMGDASLDVTEIAV----PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            E+  GVM D+S +   + +    P  DFY Y  KY+   +T+  PA     + K +Q  
Sbjct: 185 KEVAAGVMMDSSGNPIAMPLVLIEPHVDFYDYHNKYTKGATTYTCPAPFDECLTKALQEE 244

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A  A++A+GC G++R D + D        LE+N  PGMT  S+ P+ A   G SF +L  
Sbjct: 245 AVKAYKALGCSGVARVDEMVDAEGN-FICLEVNTIPGMTATSLVPKAAKAMGLSFPDLCE 303

Query: 291 WMVEDA 296
            ++E A
Sbjct: 304 KILETA 309


>gi|261418546|ref|YP_003252228.1| D-alanyl-alanine synthetase A [Geobacillus sp. Y412MC61]
 gi|319765360|ref|YP_004130861.1| D-alanine/D-alanine ligase [Geobacillus sp. Y412MC52]
 gi|261375003|gb|ACX77746.1| D-alanine/D-alanine ligase [Geobacillus sp. Y412MC61]
 gi|317110226|gb|ADU92718.1| D-alanine/D-alanine ligase [Geobacillus sp. Y412MC52]
          Length = 367

 Score =  332 bits (851), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 95/347 (27%), Positives = 159/347 (45%), Gaps = 54/347 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           + VL GG S E +VSLS+  A  +A++   F V  I +      +               
Sbjct: 5   VGVLYGGKSPEHQVSLSTAMAVMNAIDPHKFDVIPIYITPEGQWIKGEQLTGPIEEIKQL 64

Query: 50  -----------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYT 80
                                          D+ F +LHG  GEDG VQ +LE+L IPY 
Sbjct: 65  QFTSAATALIPVSLNQVPAADSAAGGNEETIDVIFPLLHGPNGEDGTVQGLLEILNIPYV 124

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIK 131
            +G+LASA+ MDK+  K + +  G+     I V ++             +  +  P  +K
Sbjct: 125 GNGVLASAVGMDKVMMKNLFTQAGLRQAKYIAVTKYDWQKSGETVYDRIERELGYPCFVK 184

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--DV 189
           P   GSS+GI   K+   +    ++  ++ +  +++IE+ + G E+  GV+G+      V
Sbjct: 185 PANAGSSVGISKCKQRGDLKAAFIE--AFQYDRKIIIEEAIVGREIEIGVIGNDEPICSV 242

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
               VPK +FY YE KY    +  ++PA +  + Y+ ++++A  A QA+   G++R DF 
Sbjct: 243 VGEIVPKKEFYDYEAKYEDGQTELIIPADVTKEQYETIKQMAITAFQALDLSGLARVDFF 302

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                  V+  E+N  PG TP S+FP +  ++G  + EL+  ++  A
Sbjct: 303 L-AEDGAVYINEVNTMPGFTPYSMFPLLWQHSGVPYPELIERLIALA 348


>gi|296132694|ref|YP_003639941.1| D-alanine/D-alanine ligase [Thermincola sp. JR]
 gi|296031272|gb|ADG82040.1| D-alanine/D-alanine ligase [Thermincola potens JR]
          Length = 365

 Score =  331 bits (850), Expect = 6e-89,   Method: Composition-based stats.
 Identities = 95/346 (27%), Positives = 154/346 (44%), Gaps = 52/346 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI------------------------ 36
           +AV+ GG S E EVSL+S  +   AL    +++  I                        
Sbjct: 6   VAVIFGGKSGEHEVSLASANSVLQALNKEKYEIIPIKISREGKWYILSSLNTFDSNIKCE 65

Query: 37  -----DVDRSVGLVLAHLKP----------DLAFNVLHGNFGEDGLVQAILELLEIPYTH 81
                D      + L   +P          D+   VLHG FGEDG +Q +LEL  IPY  
Sbjct: 66  AAILADPTGDNLVNLQEKEPGQIFFTRESVDVVLPVLHGTFGEDGTLQGLLELANIPYVG 125

Query: 82  SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKP 132
            G+ AS++ MDK   K + +   +P    +   R   +          +  +  P  +KP
Sbjct: 126 CGVAASSVGMDKAMMKAMFAQHNLPQGKYLTFLRKEWEKDQDPICDEIETALGYPVFVKP 185

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT-- 190
              GSS+GI        +   +  +    +  ++++E+ ++G E+   V+G+   + +  
Sbjct: 186 ANLGSSVGISKAANRDELVKAMHLAC--LYDRKVVVEENINGREIEVAVLGNDEPEASIA 243

Query: 191 EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
              VP +DFY YE KY S  S   +PA +      EV++LA  A +AI   G+SR DF  
Sbjct: 244 GEIVPCNDFYDYEAKYISGTSELKIPAPLDDKTMNEVRKLAVKAFKAIDGAGLSRVDFFI 303

Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              + ++   EIN  PG T +S++P++ A  G  + +LL  ++E A
Sbjct: 304 KKDTGEILINEINTLPGFTEISMYPKLWAATGLPYDKLLDRLIELA 349


>gi|238021217|ref|ZP_04601643.1| hypothetical protein GCWU000324_01115 [Kingella oralis ATCC 51147]
 gi|237868197|gb|EEP69203.1| hypothetical protein GCWU000324_01115 [Kingella oralis ATCC 51147]
          Length = 309

 Score =  331 bits (850), Expect = 6e-89,   Method: Composition-based stats.
 Identities = 110/299 (36%), Positives = 163/299 (54%), Gaps = 5/299 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSERE+SL+SGKA  +AL+  G      D   +    L       AFN+LHG
Sbjct: 10  IAVLMGGFSSEREISLASGKAILAALQSKGIDAHPFDPAETNLAELKTQGFQAAFNILHG 69

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118
            +GEDG VQ  LE L IPYT  G+LASAL MDK R K +  + G+P+    +++  +   
Sbjct: 70  TYGEDGTVQGALEALGIPYTGCGVLASALGMDKYRCKLIWQALGLPIPAFAVLHDDSDFT 129

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
             +  +  P  IKP   GSS+G+  + +   +     Q    N   ++L EQ++ G E T
Sbjct: 130 AVEQQLGLPLFIKPAAEGSSVGVHKVCQAGELAQIYRQLRRENLHGEILAEQFMSGGEYT 189

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           CGV+   +L    I +P++DFY +E KY   ++ ++ P+ +  +  + +Q LA  A  AI
Sbjct: 190 CGVLNQQALPSIRI-IPQNDFYDWEAKYQRNDTVYLCPSDLSAEDEQLMQSLARQAFAAI 248

Query: 239 GCR-GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           G      R DFL D    K++ LE+N  PGMT  S+ P+ A   G  F +L + +++ A
Sbjct: 249 GGGNTCGRVDFLKDAA-GKIYILEVNTLPGMTGHSLIPKAAQQKGIGFADLCVAILQTA 306


>gi|253997366|ref|YP_003049430.1| D-alanine--D-alanine ligase [Methylotenera mobilis JLW8]
 gi|253984045|gb|ACT48903.1| D-alanine/D-alanine ligase [Methylotenera mobilis JLW8]
          Length = 301

 Score =  331 bits (850), Expect = 6e-89,   Method: Composition-based stats.
 Identities = 113/298 (37%), Positives = 162/298 (54%), Gaps = 8/298 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S EREVSL SG A  +AL+  G      D        L     D A   LHG
Sbjct: 7   VAVLLGGKSGEREVSLKSGTAVLAALQRQGVDAHAFDPATRPLHDLES--FDTAMISLHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTM 118
            FGEDG +Q  LELL IPYT SG++ASA+ MDK R+K + S+ GV      LV  +    
Sbjct: 65  RFGEDGAMQGALELLGIPYTGSGVMASAIGMDKWRTKMMWSAAGVSTPAFELVSADSDFE 124

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
             +  +  P  +KP   GSS+GI  +K+   +      ++       ++ EQ+V G E T
Sbjct: 125 AIEQRLGLPLFVKPANEGSSIGISKVKQTGGLKAAYELAA--KSDPLVIAEQFVGGGEYT 182

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
            G++GD +L +  I VPK++FY +E KY   ++ +  P  +  +   ++Q+ A LA   I
Sbjct: 183 VGILGDQALPIVRI-VPKNEFYDFEAKYLRDDTEYRCPCGLSAEKEAQIQQEALLAFNTI 241

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           GC+G  R DFL D   +  ++LE+N  PGMT  S+ P  A  AG SF EL++ ++  A
Sbjct: 242 GCQGWGRVDFLMDEAGKH-YFLEVNTSPGMTDHSLVPMAAKAAGISFDELVVSVLRLA 298


>gi|152988032|ref|YP_001350318.1| D-alanine--D-alanine ligase [Pseudomonas aeruginosa PA7]
 gi|150963190|gb|ABR85215.1| D-alanine--D-alanine ligase [Pseudomonas aeruginosa PA7]
          Length = 319

 Score =  331 bits (850), Expect = 6e-89,   Method: Composition-based stats.
 Identities = 103/302 (34%), Positives = 161/302 (53%), Gaps = 6/302 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL SG     ++  AG     IDV   +   L   K D AF +LHG
Sbjct: 21  VAVLFGGKSAEREVSLKSGAMVLQSMLAAGVDAFGIDVGDDLLHRLVEEKIDRAFIILHG 80

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTM 118
             GEDG +Q +LE   IPYT SG+LASAL+MDK+R+K+V  S G+P     ++       
Sbjct: 81  RGGEDGSMQGLLECAGIPYTGSGVLASALAMDKLRTKRVWRSLGLPTPDYAVLGSEDDCR 140

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           ++   +  P ++KP   GSS+G+  +     +     +++   +  Q+L+EQ++ G E T
Sbjct: 141 EAAQRLGFPLIVKPAHEGSSIGMAKVGGLDELIAAWREAA--RYDSQVLVEQWISGPEFT 198

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +    L    +  P + FY Y+ KY + ++ + +P  +      E++ L   A  A+
Sbjct: 199 VATLRGQVLPAIRLGTPHT-FYDYDAKYLASDTRYQVPCGLDEAKESELKDLTARACDAL 257

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           G +G  R+D + D   R  + LE+N  PGMT  S+ P  A  AG  F++L+L ++ D+  
Sbjct: 258 GIQGWGRADVMQDAEGR-FWLLEVNTAPGMTDHSLVPMAARAAGLDFQQLVLAILADSRE 316

Query: 299 LR 300
            R
Sbjct: 317 AR 318


>gi|257454701|ref|ZP_05619957.1| D-alanine--D-alanine ligase B [Enhydrobacter aerosaccus SK60]
 gi|257448011|gb|EEV22998.1| D-alanine--D-alanine ligase B [Enhydrobacter aerosaccus SK60]
          Length = 307

 Score =  331 bits (850), Expect = 7e-89,   Method: Composition-based stats.
 Identities = 101/297 (34%), Positives = 155/297 (52%), Gaps = 8/297 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AV+ GG S+EREVSL+SG+A   AL   G      D   +    L     D  FNVLHG
Sbjct: 13  VAVVCGGWSAEREVSLTSGQAVLDALLAKGVDAHHFDPKETDISKLRD--YDRVFNVLHG 70

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118
            FGEDG +Q +L+   IPYT  G+LASA++MDK R++ V  +  +P  P ++++  T   
Sbjct: 71  TFGEDGSLQGVLDGFNIPYTGCGVLASAIAMDKFRNRLVWQALDLPNVPYVVLDDNTDFT 130

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
             +  +  P  +KP   GSS+G+  IK+   +           +   +L E+ + G E  
Sbjct: 131 AIEQQLGLPLFVKPAAEGSSVGVFKIKEVGEL--AKTYPQLKQYHGAILAEKAITGGEYA 188

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           C ++GD  L    I +P ++FY YE KY+  ++ +  P+ +     + +Q++A  A  AI
Sbjct: 189 CSILGDEVLPSIRI-IPTTEFYDYEAKYNRDDTVYQCPSDLSEAQEQTMQQIARKAFAAI 247

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           G +G SR DF        ++ LE+N  PGMT  S+ P  A   G  F  L + ++E 
Sbjct: 248 GGKGWSRVDF-LRDDEGTLYLLELNTVPGMTSHSLVPMAAKARGMDFATLCVRILEQ 303


>gi|238786724|ref|ZP_04630525.1| D-alanine--D-alanine ligase [Yersinia frederiksenii ATCC 33641]
 gi|238725092|gb|EEQ16731.1| D-alanine--D-alanine ligase [Yersinia frederiksenii ATCC 33641]
          Length = 289

 Score =  331 bits (850), Expect = 7e-89,   Method: Composition-based stats.
 Identities = 97/291 (33%), Positives = 156/291 (53%), Gaps = 13/291 (4%)

Query: 15  SLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILEL 74
           SL SG+A  + L +AG     +D   S    L     D  F  LHG  GEDG +Q +LE 
Sbjct: 2   SLLSGQAVLAGLREAGIDAHGVDTKDSPVTQLKEQGFDKVFIALHGRGGEDGTLQGVLEF 61

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ---------HLIS 125
           L++PYT SG++ASAL+MDK+R+K V  +  +P+ P + +NR   ++            + 
Sbjct: 62  LQLPYTGSGVMASALTMDKLRTKLVWQASDLPISPYVALNRQQFETLSSEELSACVAKLG 121

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            P ++KP   GSS+G+  + +   +   L++  ++ H   +LIE+++ G E T  ++GD 
Sbjct: 122 LPLIVKPSHEGSSVGMSKVDQASELQAALVE--AFRHDTDVLIEKWLSGPEFTVAILGDE 179

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
            L    I  P   FY YE KY S  + +  P+ +  ++ +++  LA  A+QA+GC G  R
Sbjct: 180 VLPSIRIQAP-GVFYDYEAKYLSDETQYFCPSGLSAELEQQLAELALQAYQALGCSGWGR 238

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            D + D    + + LE+N  PGMT  S+ P  A  +G SF +L+  ++  A
Sbjct: 239 VDVMQD-SDGRFYLLEVNTSPGMTSHSLVPMAARESGLSFSQLVARILMLA 288


>gi|49474453|ref|YP_032495.1| D-alanine--D-alanine ligase [Bartonella quintana str. Toulouse]
 gi|81646935|sp|Q6FZ74|DDL_BARQU RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|49239957|emb|CAF26362.1| D-alanine--D-alanine ligase [Bartonella quintana str. Toulouse]
          Length = 306

 Score =  331 bits (850), Expect = 7e-89,   Method: Composition-based stats.
 Identities = 160/301 (53%), Positives = 225/301 (74%), Gaps = 1/301 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSER VSLSSG ACA  LE  G++VS++DVD  +  VL  L+PD+AFN LHG
Sbjct: 6   VAVLMGGGSSERSVSLSSGTACADILEARGYRVSRVDVDSHIASVLERLQPDVAFNALHG 65

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG +Q +LE L+IPYTHSG++ASAL+MDK R+K VV+S GV V PS +++RF +  
Sbjct: 66  PFGEDGCIQGVLEYLKIPYTHSGVMASALAMDKGRAKIVVASVGVSVAPSCIMSRFAVGR 125

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +H + PPYVIKPL  GSS G++++K+++S P   +  + W + D++++E+Y+ G E TC 
Sbjct: 126 EHPMEPPYVIKPLCEGSSFGVVIVKENESAPPRNVVGAEWVYADEVIVEKYIPGREFTCA 185

Query: 181 VMGDASLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
           V+G+ +LDV EI   K   FY+Y+ KY S  S H+ PA++  +IY+ VQR++  AHQAIG
Sbjct: 186 VLGNEALDVCEIFPDKHFQFYNYDSKYKSGGSLHICPAQLSPNIYQNVQRMSLAAHQAIG 245

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
           CRG+SRSDF F+  + ++ WLEIN QPGMTP S+FP++A  +G ++ +++ WMVEDASC+
Sbjct: 246 CRGVSRSDFRFNEETGELVWLEINTQPGMTPTSLFPDIAKASGRTYGDIVQWMVEDASCM 305

Query: 300 R 300
           R
Sbjct: 306 R 306


>gi|319786254|ref|YP_004145729.1| D-alanine/D-alanine ligase [Pseudoxanthomonas suwonensis 11-1]
 gi|317464766|gb|ADV26498.1| D-alanine/D-alanine ligase [Pseudoxanthomonas suwonensis 11-1]
          Length = 317

 Score =  331 bits (850), Expect = 7e-89,   Method: Composition-based stats.
 Identities = 107/300 (35%), Positives = 166/300 (55%), Gaps = 9/300 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSEREVSL SG+    AL   G     +D   ++   LA  K D  FN+LHG
Sbjct: 20  VAVLMGGTSSEREVSLDSGRNVLEALRARGIDAQPVDGIPALVEALAQEKFDRVFNILHG 79

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GE+G+VQ +L+ L +PYT +G+L SAL++DK+R+KQV  S  +P    + ++R    +
Sbjct: 80  GDGENGVVQGLLQALGVPYTGAGVLGSALTLDKIRTKQVWLSLNLPTPRYVRLDRGADAA 139

Query: 121 QHL-----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175
                   +  P ++KP   GSS+G+  +  +  +   +  ++   +  ++L+EQ V G 
Sbjct: 140 AVRAAARSLGLPVIVKPSCEGSSVGVSRVMDEDGLDEAIALAA--RYPGEMLMEQMVVGD 197

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
           ELT GV+GD +L    I VP+ ++Y Y  KY + ++ ++ P  +  +    V+ LA  A 
Sbjct: 198 ELTVGVLGDIALPSIRI-VPRGEWYDYNAKYIAEDTQYLCP-GLEGEDELRVRELALAAF 255

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           +A GC G  R D +    +   + LE+N  PGMT  S+ P+ AA  G  F EL   ++E 
Sbjct: 256 RAAGCSGWGRIDVMRSRATGAPYLLEVNTAPGMTSHSLVPKAAAQLGIGFEELCWRILEQ 315


>gi|304413645|ref|ZP_07395089.1| D-alanine:D-alanine ligase [Candidatus Regiella insecticola LSR1]
 gi|304283736|gb|EFL92130.1| D-alanine:D-alanine ligase [Candidatus Regiella insecticola LSR1]
          Length = 328

 Score =  331 bits (850), Expect = 7e-89,   Method: Composition-based stats.
 Identities = 98/305 (32%), Positives = 157/305 (51%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+ERE+SL SG+A    L +AG     +D        L        F  LHG
Sbjct: 27  IAVLLGGTSAEREISLLSGQAVLKGLIEAGIDAHAVDTRDVPVTQLKEQGFSKVFIALHG 86

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q  L  L++PYT S   +SALSMDK+++K    S G+P+ P + +      +
Sbjct: 87  RGGEDGSLQKQLASLQLPYTGSHAASSALSMDKLQTKLRWQSLGLPIAPHVALTSQQFAA 146

Query: 121 ---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P ++KP   GSSLG+  +     +P  L    ++ + +++LIE++
Sbjct: 147 LSSGELARQIADLGFPLIVKPSHEGSSLGMSKVNAFNELPPSL--EKAFRYDEEVLIEKW 204

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+ +L    I  P   FY Y+ KY S  + +  P+ +     +++  LA
Sbjct: 205 LSGSEFTVAILGEQTLPSIRIQAP-GIFYDYDAKYLSNQTHYFCPSGLNEKQEQQLAALA 263

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A+QA+GC G  R D + D  +   + LE+N  PGMT  S+ P  A   G +F +L++ 
Sbjct: 264 KQAYQALGCSGWGRVDVMQDSDAN-FYLLEVNTSPGMTEHSLVPMAARQYGLNFSQLVVQ 322

Query: 292 MVEDA 296
           ++  A
Sbjct: 323 ILALA 327


>gi|330938055|gb|EGH41817.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. pisi str.
           1704B]
          Length = 319

 Score =  331 bits (849), Expect = 8e-89,   Method: Composition-based stats.
 Identities = 113/302 (37%), Positives = 168/302 (55%), Gaps = 6/302 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+ER VSL+SG A  SAL +AG     IDV       L   K D AF VLHG
Sbjct: 21  VAVLFGGKSAERAVSLNSGNAVLSALLEAGVDAFGIDVGDDFLQRLVSEKIDRAFIVLHG 80

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--M 118
             GEDG +Q +LE LEIPYT SG+LASAL+MDK+R+KQV  S G+      ++   +  +
Sbjct: 81  RGGEDGTMQGLLECLEIPYTGSGVLASALAMDKLRTKQVWQSLGLATPLHAVLENESDCI 140

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   +  P ++KP   GSS+G+  +     +      +S   +  Q+L+EQ++ G E T
Sbjct: 141 CAATELGLPLIVKPAHEGSSIGMAKVNSVDELIAAWKAAS--TYDSQVLVEQWIQGPEFT 198

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +    L    +  P S FY Y+ KY + ++ + +P  +     +E+++LA  A +AI
Sbjct: 199 VASLRGQVLPPIGLGTPHS-FYDYDAKYLASDTQYRIPCGLGDAQEQELKQLAARACEAI 257

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           G  G +R+D + D    K + LE+N  PGMT  S+ P  A  AG  F++L+L ++ D+  
Sbjct: 258 GIAGWARTDVMQDAQ-GKFWLLEVNTVPGMTDHSLVPMAARAAGLDFQQLVLAILADSVQ 316

Query: 299 LR 300
            R
Sbjct: 317 AR 318


>gi|56418758|ref|YP_146076.1| D-alanyl-alanine synthetase A [Geobacillus kaustophilus HTA426]
 gi|81348304|sp|Q5L3H2|DDL_GEOKA RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|56378600|dbj|BAD74508.1| D-alanine-D-alanine ligase [Geobacillus kaustophilus HTA426]
          Length = 367

 Score =  331 bits (849), Expect = 8e-89,   Method: Composition-based stats.
 Identities = 94/347 (27%), Positives = 158/347 (45%), Gaps = 54/347 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           + VL GG S E +VSLS+  A  +A++   F V  I +      +               
Sbjct: 5   VGVLYGGKSPEHQVSLSTAMAVMNAIDPHKFDVIPIYITPEGQWIKGEQLTGPIEEIKQL 64

Query: 50  -----------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYT 80
                                          D+ F +LHG  GEDG VQ +LE+L IPY 
Sbjct: 65  QFTSAATALIPVSLNQVPAADSAAGGNEETIDVIFPLLHGPNGEDGTVQGLLEILNIPYV 124

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIK 131
            +G+LASA+ MDK+  K + +  G+     I V ++             +  +  P  +K
Sbjct: 125 GNGVLASAVGMDKVMMKNLFAQAGLRQAKYIAVTKYDWQKRGETVYDRIERELGYPCFVK 184

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--DV 189
           P   GSS+GI   K+   +    ++  ++ +  +++IE+ + G E+  GV+G+      V
Sbjct: 185 PANAGSSVGISKCKQRGDLKAAFIE--AFQYDRKIIIEEAIVGREIEIGVIGNDEPICSV 242

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
               VPK +FY YE KY    +  ++PA +  + Y+ ++++A  A Q +   G++R DF 
Sbjct: 243 VGEIVPKKEFYDYEAKYEDGQTELIIPADVTKEQYETIKQMAITAFQVLDLSGLARVDFF 302

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                  V+  E+N  PG TP S+FP +  ++G  + EL+  ++  A
Sbjct: 303 L-AEDGAVYINEVNTMPGFTPYSMFPLLWQHSGVPYPELIERLIALA 348


>gi|254521243|ref|ZP_05133298.1| D-alanine--D-alanine ligase B [Stenotrophomonas sp. SKA14]
 gi|219718834|gb|EED37359.1| D-alanine--D-alanine ligase B [Stenotrophomonas sp. SKA14]
          Length = 320

 Score =  331 bits (849), Expect = 8e-89,   Method: Composition-based stats.
 Identities = 118/298 (39%), Positives = 169/298 (56%), Gaps = 7/298 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG SSEREVSL SG+    AL+  G     +D   ++  VLA    D  FN+LHG
Sbjct: 20  VAVLLGGSSSEREVSLDSGRNVLEALQARGIDAFAVDGIPALAKVLAAGGVDRVFNILHG 79

Query: 61  --NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
               GEDG+VQ +++   +PYT S +L SALSMDK+R+KQV  S G+P      V+  T+
Sbjct: 80  HNGGGEDGIVQGLMDAFGVPYTGSNVLGSALSMDKIRTKQVWLSLGLPTPQYRKVDSSTV 139

Query: 119 DS-QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
                 +  P V+KP   GSS+GI  +  D  +   +  ++   +  QLL+EQ V G EL
Sbjct: 140 HVLAAELGLPVVVKPANEGSSVGISRVTDDAGLDEAVALAA--RYDGQLLMEQMVVGDEL 197

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           T  ++GD +L    I VPK  +Y Y  KY + ++ ++ P  +      E++R+A  A +A
Sbjct: 198 TVAILGDVALPSIRI-VPKGQWYDYNAKYIAEDTQYLCP-GLDGADEDEIRRIALAAFRA 255

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
            GCRG  R D + D  S + F LE+N  PGMT  S+ P+ AA AG  F EL+  ++E 
Sbjct: 256 AGCRGWGRVDVMRDRASGRFFLLEVNTAPGMTSHSLVPKAAAQAGIGFEELVWRVLEQ 313


>gi|73542661|ref|YP_297181.1| D-alanine--D-alanine ligase [Ralstonia eutropha JMP134]
 gi|123624027|sp|Q46WZ6|DDL_RALEJ RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|72120074|gb|AAZ62337.1| D-alanine--D-alanine ligase [Ralstonia eutropha JMP134]
          Length = 327

 Score =  331 bits (849), Expect = 8e-89,   Method: Composition-based stats.
 Identities = 100/303 (33%), Positives = 167/303 (55%), Gaps = 10/303 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VL GG S+ERE+SL SG    +AL+  G      D        LA    D  F  LHG
Sbjct: 17  VGVLYGGRSAEREISLMSGSGVLAALQSRGVDAHGFDPATQSVAELAAAGFDRVFIALHG 76

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG +Q +LE L +PYT SG+LASAL+MDK  +K++  +  +      ++   T   
Sbjct: 77  RYGEDGTMQGLLEQLGVPYTGSGVLASALAMDKQATKRLWMTHDLSTPRFAMLYADTDFD 136

Query: 121 Q--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                +  P ++KP + GSS+G+  +     +     ++++ ++   ++ E ++DG ELT
Sbjct: 137 AVVADLGLPLIVKPAREGSSIGLSKVTDASQMREAFEKAAALDND--VIAETFIDGAELT 194

Query: 179 CGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
           C ++G+     +L V  I  P S+ Y Y+ KY + ++ ++ P+ +  ++ +EVQ+LA  A
Sbjct: 195 CPLVGEGATAEALPVIRIVAPDSN-YDYQNKYFTDDTQYLCPSGLSAEVEREVQQLAVQA 253

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           ++ +GCRG +R+D +      K F LE+N  PGMT  S+ P  A  AG S+ + ++ +V 
Sbjct: 254 YRVLGCRGWARADVMLRA-DGKPFLLEMNTSPGMTGHSLVPMAARAAGISYEDFVMQVVA 312

Query: 295 DAS 297
            A+
Sbjct: 313 AAT 315


>gi|86609556|ref|YP_478318.1| D-alanine--D-alanine ligase B [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|123501569|sp|Q2JJV2|DDL_SYNJB RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|86558098|gb|ABD03055.1| D-alanine--D-alanine ligase B [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 325

 Score =  331 bits (849), Expect = 9e-89,   Method: Composition-based stats.
 Identities = 114/303 (37%), Positives = 168/303 (55%), Gaps = 10/303 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---PDLAFNV 57
           + VL GG S+ER+VS  +GKAC  ALED G +V  ID D  + L L   +    D  +  
Sbjct: 3   IVVLAGGRSAERQVSWVTGKACKRALEDLGHRVKVIDPDEDLPLRLWQERQAGCDFVWIA 62

Query: 58  LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF- 116
           LHG  GEDG+VQ +L+ L +PY  SG LASAL+MDK+ SKQ+  + G+P     + +   
Sbjct: 63  LHGPGGEDGVVQGMLDWLGLPYQGSGPLASALAMDKLVSKQIFRAAGIPTPDWQVWDDQN 122

Query: 117 ---TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
                D    +  P VIKP   GS++GI +++ ++S    L  + S     ++ +E+YV 
Sbjct: 123 PLTWADCAAELGSPLVIKPSNNGSTVGISIVRDERSFAQGLELARS--VSSRIFLERYVP 180

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           G E+T  ++    L   EI   + DFY YE KY+   S H++P  +        +     
Sbjct: 181 GKEITLSILSGQVLPAIEIIPAQGDFYDYEAKYAPGGSRHLIPCSLSPAGLARCEAAGLK 240

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           A+QA+GC G++R D   DP     + LE+N  PGMTP S+ P+ AA  G++F EL+  M+
Sbjct: 241 AYQALGCEGLARVDLRVDPEEN-PWVLEVNTLPGMTPTSLCPDAAAALGWTFTELVERML 299

Query: 294 EDA 296
           +DA
Sbjct: 300 QDA 302


>gi|330981214|gb|EGH79317.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. aptata str.
           DSM 50252]
          Length = 319

 Score =  331 bits (849), Expect = 9e-89,   Method: Composition-based stats.
 Identities = 113/302 (37%), Positives = 168/302 (55%), Gaps = 6/302 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+ER VSL+SG A  SAL +AG     IDV       L   K D AF VLHG
Sbjct: 21  VAVLFGGKSAERAVSLNSGNAVLSALLEAGVDAFGIDVGDDFLQRLVSEKIDRAFIVLHG 80

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--M 118
             GEDG +Q +LE LEIPYT SG+LASAL+MDK+R+KQV  S G+      ++   +  +
Sbjct: 81  RGGEDGTMQGLLECLEIPYTGSGVLASALAMDKLRTKQVWQSLGLATPLHAVLENESDCI 140

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   +  P ++KP   GSS+G+  +     +      +S   +  Q+L+EQ++ G E T
Sbjct: 141 CAATELGLPLIVKPAHEGSSIGMAKVNSVDELIAAWKAAS--TYDSQVLVEQWIQGPEFT 198

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +    L    +  P S FY Y+ KY + ++ + +P  +     +E+++LA  A +AI
Sbjct: 199 VASLRGQVLPPIGLGTPHS-FYDYDAKYLASDTQYRIPCGLGDAQEQELKQLAARACEAI 257

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           G  G +R+D + D    K + LE+N  PGMT  S+ P  A  AG  F++L+L ++ D+  
Sbjct: 258 GIAGWARTDVMQDAQ-GKFWLLEVNTVPGMTDHSLVPMAARAAGLDFQQLVLAILADSVQ 316

Query: 299 LR 300
            R
Sbjct: 317 AR 318


>gi|330973385|gb|EGH73451.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. aceris str.
           M302273PT]
          Length = 319

 Score =  331 bits (849), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 112/302 (37%), Positives = 167/302 (55%), Gaps = 6/302 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+ER VSL+SG A   AL +AG     IDV       L   K D AF VLHG
Sbjct: 21  VAVLFGGKSAERAVSLNSGNAVLGALLEAGVDAFGIDVGDDFLQRLVSEKIDRAFIVLHG 80

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--M 118
             GEDG +Q +LE LEIPYT SG+LASAL+MDK+R+KQV  S G+      ++   +  +
Sbjct: 81  RGGEDGTMQGLLECLEIPYTGSGVLASALAMDKLRTKQVWQSLGLATPAHAVLENESDCI 140

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   +  P ++KP   GSS+G+  +     +      +S   +  Q+L+EQ++ G E T
Sbjct: 141 CAATELGLPLIVKPAHEGSSIGMAKVNSVDELIAAWKAAS--TYDSQVLVEQWIQGPEFT 198

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +    L    +  P S FY Y+ KY + ++ + +P  +     +E+++LA  A +AI
Sbjct: 199 VASLRGQVLPPIGLGTPHS-FYDYDAKYLASDTQYRIPCGLGDAQEQELKQLAARACEAI 257

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           G  G +R+D + D    K + LE+N  PGMT  S+ P  A  AG  F++L+L ++ D+  
Sbjct: 258 GIAGWARTDVMQDAQ-GKFWLLEVNTVPGMTDHSLVPMAARAAGLDFQQLVLAILADSVQ 316

Query: 299 LR 300
            R
Sbjct: 317 AR 318


>gi|84686344|ref|ZP_01014238.1| D-alanine--D-alanine ligase [Maritimibacter alkaliphilus HTCC2654]
 gi|84665527|gb|EAQ12003.1| D-alanine--D-alanine ligase [Rhodobacterales bacterium HTCC2654]
          Length = 283

 Score =  331 bits (849), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 135/288 (46%), Positives = 182/288 (63%), Gaps = 8/288 (2%)

Query: 15  SLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILEL 74
           SLSSG+ CA+AL   G++V ++D    +   L+ + PD+ FN LHG FGEDG VQ +LE 
Sbjct: 2   SLSSGRECAAALRGEGYEVVELDAGPDLCARLSEIAPDVVFNALHGQFGEDGRVQGLLEW 61

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLK 134
           L IPYTHSG+L+SAL+MDK RSK+V S  G+P+  S L ++  ++ +H++ PPYV+KP  
Sbjct: 62  LRIPYTHSGVLSSALAMDKERSKEVFSQAGLPIAESRLASKDEIEGRHVMEPPYVVKPYN 121

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194
            GSS+G+ ++ +  + P  L      +  D L++E+YV G ELT  VMGD +L VTEI  
Sbjct: 122 EGSSVGVYIVAEGANTPPKLAV----DMPDTLMVEKYVPGRELTVTVMGDRALAVTEIVT 177

Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
               +Y Y+ KY    S H +PAK+P  I       A  AH A+GCRG+SRSDF +D   
Sbjct: 178 --DGWYDYDAKYKPGGSRHEVPAKLPDQITAACLDYAVRAHDALGCRGVSRSDFRWDEDK 235

Query: 255 R--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
               +  LE N QPGMTP S+ PE AA  G +F  L+ WMVEDASC R
Sbjct: 236 GLDGLILLEQNTQPGMTPTSLTPEQAATVGITFGALVRWMVEDASCNR 283


>gi|66047327|ref|YP_237168.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. syringae
           B728a]
 gi|63258034|gb|AAY39130.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. syringae
           B728a]
          Length = 319

 Score =  330 bits (848), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 112/302 (37%), Positives = 166/302 (54%), Gaps = 6/302 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+ER VSL+SG A   AL +AG     IDV       L   K D AF VLHG
Sbjct: 21  VAVLFGGKSAERAVSLNSGNAVLGALLEAGVDAFGIDVGDDFLQRLVSEKIDRAFIVLHG 80

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--M 118
             GEDG +Q +LE LEIPYT SG+LASAL+MDK+R+KQV  S G+      ++   +  +
Sbjct: 81  RGGEDGTMQGLLECLEIPYTGSGVLASALAMDKLRTKQVWQSLGLATPAHAVLENESDCI 140

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   +  P ++KP   GSS+G+  +     +      +S   +  Q+L+EQ++ G E T
Sbjct: 141 CAATELGLPLIVKPAHEGSSIGMAKVNSVDELIAAWKAAS--TYDSQVLVEQWIQGPEFT 198

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +    L    +  P S FY Y+ KY + ++ + +P  +     +E+++LA  A  AI
Sbjct: 199 VASLRGQVLPPIGLGTPHS-FYDYDAKYLASDTQYRIPCGLGDAQEQELKQLAARACDAI 257

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           G  G +R+D + D    K + LE+N  PGMT  S+ P  A  AG  F++L+L ++ D+  
Sbjct: 258 GIAGWARTDVMQDAQ-GKFWLLEVNTVPGMTDHSLVPMAARAAGLDFQQLVLAILADSVQ 316

Query: 299 LR 300
            R
Sbjct: 317 AR 318


>gi|77166309|ref|YP_344834.1| D-alanine--D-alanine ligase [Nitrosococcus oceani ATCC 19707]
 gi|254435287|ref|ZP_05048794.1| D-ala D-ala ligase N-terminal domain protein, putative
           [Nitrosococcus oceani AFC27]
 gi|123593332|sp|Q3J792|DDL_NITOC RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|76884623|gb|ABA59304.1| D-alanine--D-alanine ligase [Nitrosococcus oceani ATCC 19707]
 gi|207088398|gb|EDZ65670.1| D-ala D-ala ligase N-terminal domain protein, putative
           [Nitrosococcus oceani AFC27]
          Length = 316

 Score =  330 bits (848), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 102/302 (33%), Positives = 163/302 (53%), Gaps = 6/302 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VLMGG S+ERE+SL SG A   +L   G +   IDVD+ V   L+  +   AF  LHG
Sbjct: 13  VVVLMGGYSAEREISLKSGTAVLQSLLRQGIEAHGIDVDKGVLTQLSKGQFTRAFIALHG 72

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG++Q +LE L +PYT SG+L SAL+MDK+RSK++     +P     ++ R T  +
Sbjct: 73  RGGEDGVIQGVLETLNLPYTGSGVLGSALTMDKLRSKRLWRGMDLPTADFSVLTRDTNPA 132

Query: 121 --QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                +  P ++KP + GSSLG++ ++  +++     ++  +     +  E+++ G E T
Sbjct: 133 LIAADLGLPLIVKPAREGSSLGMMKVESIEALQSAYREAVIF--DTAVFAERWLPGAEYT 190

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             ++ D  L +  +  P+  FY +E KY +  + +  P  +     +++Q LA  A QA+
Sbjct: 191 AAILADRVLPLIRLETPRV-FYDFEAKYHANTTRYFCPCGLSEKQEQDLQALALEAFQAL 249

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           G  G  R D   D  +   + LEIN  PGMT  S+ P  A  AG  F E++L ++  +  
Sbjct: 250 GASGWGRVDLRCDEKA-HPYLLEINTVPGMTDHSLVPMAAQAAGIEFDEMVLQILASSLE 308

Query: 299 LR 300
            R
Sbjct: 309 RR 310


>gi|23014453|ref|ZP_00054268.1| COG1181: D-alanine-D-alanine ligase and related ATP-grasp enzymes
           [Magnetospirillum magnetotacticum MS-1]
          Length = 306

 Score =  330 bits (847), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 136/306 (44%), Positives = 194/306 (63%), Gaps = 12/306 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL---KPDLAFNV 57
           + VLMGG S+ER+VSL SG A A ALE AGF+V+ +D +R+   ++  +   +PD+ FN 
Sbjct: 6   VTVLMGGASAERDVSLRSGAAAAKALEQAGFEVTLVDCNRNPAELVRAITETQPDVVFNA 65

Query: 58  LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117
           LHG FGEDG VQ +L LL +PYTHSG+LASA +MDK  ++ +  + G+PV    +V R  
Sbjct: 66  LHGRFGEDGCVQGVLNLLGVPYTHSGLLASAAAMDKGFARALFQAAGIPVAEGRVVTRAE 125

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
                 +  P+V+KPL  GSS+G+ +++++Q  PL       ++  D++L+E +V G EL
Sbjct: 126 STGPDPLPRPFVVKPLNEGSSVGVFIVRENQPSPLA---DWPFD-ADEVLVESFVPGREL 181

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           T  VMGD +L V EI   +  FY YE KY+   S H++PA I    Y E  RLA  AH+A
Sbjct: 182 TVAVMGDKALGVLEI-TSEHGFYDYEAKYAPGGSRHIMPAPIASADYAEACRLAVAAHKA 240

Query: 238 IGCRGISRSDFLFDPLSRK----VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +GCRG+SR+D  +D  +      +  LE+N QPGMT  S+ PE+AA+ G +F  L+ WMV
Sbjct: 241 LGCRGVSRADLRYDDTTPGRPPRLVMLEVNTQPGMTATSLVPEIAAHQGITFPALVRWMV 300

Query: 294 EDASCL 299
           E+A C 
Sbjct: 301 EEARCD 306


>gi|94312057|ref|YP_585267.1| D-alanine--D-alanine ligase [Cupriavidus metallidurans CH34]
 gi|190359208|sp|Q1LIM8|DDL_RALME RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|93355909|gb|ABF09998.1| D-alanine:D-alanine ligase [Cupriavidus metallidurans CH34]
          Length = 327

 Score =  330 bits (847), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 99/303 (32%), Positives = 166/303 (54%), Gaps = 10/303 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VL+GG S+ERE+SL SG    +AL+  G      D        LA    D  F  LHG
Sbjct: 17  VGVLLGGKSAEREISLLSGNGVLAALKSRGVDAHPFDPGLQPISELAAAGFDRVFIALHG 76

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG +Q +LE L IPYT SG+LASAL+MDK  +K++  + G+      ++   T   
Sbjct: 77  RYGEDGTMQGLLEQLGIPYTGSGVLASALAMDKQATKRLWMTHGLATPRFAMLYANTDFD 136

Query: 121 Q--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                +  P ++KP + GSS+G+  +     +     +++  +    ++ E ++DG ELT
Sbjct: 137 AVVADLGLPLIVKPAREGSSIGLTKVIAADQMRAAFEKAAGLDAD--VIAETFIDGAELT 194

Query: 179 CGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
           C ++G+     +L V +I  P+S+ Y Y+ KY + ++ ++ P+ +P  + +EV+ LA  A
Sbjct: 195 CPIVGEGPTAEALPVIKIVAPESN-YDYQNKYFTDDTQYLCPSTLPDALEREVRALAVEA 253

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            + +GCRG +R+D +      K + LE+N  PGMT  S+ P  A   G S+ + ++ ++ 
Sbjct: 254 FRVLGCRGWARADVMLT-RDGKPYLLEMNTSPGMTGHSLVPMAARANGISYEDFVMQVLA 312

Query: 295 DAS 297
            A+
Sbjct: 313 AAT 315


>gi|78046388|ref|YP_362563.1| D-alanine--D-alanine ligase [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
 gi|325925685|ref|ZP_08187063.1| D-alanine--D-alanine ligase [Xanthomonas perforans 91-118]
 gi|78034818|emb|CAJ22463.1| D-alanine--D-alanine ligase B [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|325543901|gb|EGD15306.1| D-alanine--D-alanine ligase [Xanthomonas perforans 91-118]
          Length = 318

 Score =  330 bits (847), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 108/302 (35%), Positives = 162/302 (53%), Gaps = 11/302 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG SSEREVSL+SG     AL   G     +D   ++   L   + D  FNVLHG
Sbjct: 19  VAVLLGGTSSEREVSLNSGSNVLEALRARGVDAQPVDGIPALAKALVAQQFDRVFNVLHG 78

Query: 61  --NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
               GEDG+VQ ++E   +PYT S +L SALSMDK+R+KQV  S G+       +     
Sbjct: 79  HNGGGEDGIVQGLMEAFGVPYTGSDVLGSALSMDKIRTKQVWLSLGLSTPRYARLAAGAS 138

Query: 119 DSQ-----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
                     I  P ++KP   GSS+G+  +     +   +  ++   +   LL+EQ ++
Sbjct: 139 AEAIHAAAQQIGLPVIVKPANEGSSVGVSRVFDQAQLEEAVTLAA--RYDGALLMEQLIE 196

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           G ELT  V+GD +L    I VPK  +Y Y  KY + ++ ++ P  +  +   ++++LA  
Sbjct: 197 GDELTVAVLGDTALPSIRI-VPKGQWYDYNAKYIAEDTQYLCP-GLEGEAETQIRQLALD 254

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           A +A GCRG  R D + D  S +++ LE+N  PGMT  S+ P+ A   G  F EL+  ++
Sbjct: 255 AFRAAGCRGWGRVDVMRDGSSGQLYLLEVNTAPGMTSHSLVPKAARQLGIDFEELVWRVL 314

Query: 294 ED 295
           E 
Sbjct: 315 EQ 316


>gi|312792764|ref|YP_004025687.1| d-alanine/d-alanine ligase [Caldicellulosiruptor kristjanssonii
           177R1B]
 gi|312876811|ref|ZP_07736789.1| D-alanine/D-alanine ligase [Caldicellulosiruptor lactoaceticus 6A]
 gi|311796430|gb|EFR12781.1| D-alanine/D-alanine ligase [Caldicellulosiruptor lactoaceticus 6A]
 gi|312179904|gb|ADQ40074.1| D-alanine/D-alanine ligase [Caldicellulosiruptor kristjanssonii
           177R1B]
          Length = 364

 Score =  330 bits (847), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 96/345 (27%), Positives = 174/345 (50%), Gaps = 51/345 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +AVL GG+S+E E+S+ S K+    ++   +++  I + +    +L   K          
Sbjct: 6   VAVLFGGVSTEHEISIVSAKSIMQNMDKEKYEIIPIGITKEGKWLLYTGKIEDLDNKWTQ 65

Query: 52  -----------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
                                        D+ F VLHG  GEDG VQ +LEL  IPY   
Sbjct: 66  FSIECFISPDRTKKALVKIKDNEATFIDIDVVFPVLHGLNGEDGTVQGLLELSNIPYVGC 125

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPL 133
           G+L+SA+ MDK  +K++    G+P    ++V +    +         +   S P  +KP 
Sbjct: 126 GVLSSAICMDKAFAKKLALLEGIPQGHFLVVYKNEYSAKKDYFIRRIESEFSYPVFVKPA 185

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
             GSS+GI   K  + + L + +  ++ +  ++LIEQ ++  E+ C V+G+  + V+E  
Sbjct: 186 NSGSSVGISKAKDREDLVLAIHE--AFLYDTKILIEQAINAREIECAVLGNDEVFVSEPG 243

Query: 194 --VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
             +P  +FYSYE KY   +S  ++PA++P ++ +E++ LA   ++   C G++R DF  D
Sbjct: 244 EIIPSREFYSYEAKYIDNSSELIIPARLPKEVVEEIKDLAARIYKIFECCGMARVDFFVD 303

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             + KV++ E+N  PG T +S++P++  ++   + +L+  ++  A
Sbjct: 304 KDTNKVYFNEVNTIPGFTSISMYPKLMEFSSIPYSQLIDKLISLA 348


>gi|220927741|ref|YP_002504650.1| D-alanyl-alanine synthetase A [Clostridium cellulolyticum H10]
 gi|254767725|sp|B8I590|DDL_CLOCE RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|219998069|gb|ACL74670.1| D-alanine/D-alanine ligase [Clostridium cellulolyticum H10]
          Length = 376

 Score =  330 bits (847), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 92/357 (25%), Positives = 165/357 (46%), Gaps = 63/357 (17%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           +A++ GG SSE EVS  S ++    ++   + V  I + +S   +               
Sbjct: 6   VAIIFGGQSSEHEVSRVSAQSVIENIDKQKYDVEIIGITKSGQWLKYDGPVEKIGNGDWE 65

Query: 46  -LAHLKP--------------------------------DLAFNVLHGNFGEDGLVQAIL 72
            +A  KP                                D+ F VLHG  GEDG +Q + 
Sbjct: 66  AIAQKKPVESLSQAGISSSGITTVNSVRQIMPGNVKAPIDVIFPVLHGCNGEDGTIQGLF 125

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT---------MDSQHL 123
           EL  IPY   G+L SA+ MDK  +K +    G+P    ++ NR              +  
Sbjct: 126 ELAGIPYVGCGVLGSAVGMDKAYTKIIFEKEGLPQGDYLVFNRKQVYNRIEDVVAQIEGR 185

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           ++ P  +KP   GSS+G+      +S+   L  ++   +  ++L+E++++G E+ C V+G
Sbjct: 186 LTYPCFVKPSNAGSSVGVNKASDRESLVKALNIAA--KNDRRILVEEFINGREIECAVLG 243

Query: 184 DASLDVTEI--AVPKSDFYSYELKYSSLNSTH--VLPAKIPLDIYKEVQRLAFLAHQAIG 239
           + +   + +   VP +DFY YE KY   +S+   +    +  +  ++++  A  A + + 
Sbjct: 244 NDNPVASTVGEVVPCNDFYDYEAKYQVGDSSKVVIPAPNLSKETVEKIREYAVRAFKCLD 303

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           C G+SR DF     + +++  EIN  PG T +S++P++ A +G  + EL+  ++E A
Sbjct: 304 CAGLSRVDFFVHKETGEIYINEINTLPGFTQISMYPKLWAASGIPYSELINKLIELA 360


>gi|330895225|gb|EGH27563.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. japonica str.
           M301072PT]
          Length = 319

 Score =  330 bits (847), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 113/302 (37%), Positives = 167/302 (55%), Gaps = 6/302 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+ER VSL+SG A   AL DAG     IDV       L   K D AF VLHG
Sbjct: 21  VAVLFGGKSAERAVSLNSGNAVLGALLDAGVDAFGIDVGDDFLQRLVSEKIDRAFIVLHG 80

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--M 118
             GEDG +Q +LE LEIPYT SG+LASAL+MDK+R+KQV  S G+      ++   +  +
Sbjct: 81  RGGEDGTMQGLLECLEIPYTGSGVLASALAMDKLRTKQVWQSLGLATPLHAVLENESDCI 140

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   +  P ++KP   GSS+G+  +     +      +S   +  Q+L+EQ++ G E T
Sbjct: 141 CAATELGLPLIVKPAHEGSSIGMAKVNSVDELIAAWKAAS--TYDSQVLVEQWIQGPEFT 198

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +    L    +  P S FY Y+ KY + ++ + +P  +     +E+++LA  A +AI
Sbjct: 199 VASLRGQVLPPIGLGTPHS-FYDYDAKYLASDTQYRIPCGLGDAQEQELKQLAARACEAI 257

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           G  G +R+D + D    K + LE+N  PGMT  S+ P  A  AG  F++L+L ++ D+  
Sbjct: 258 GIAGWARTDVMQDAQ-GKFWLLEVNTVPGMTDHSLVPMAARAAGLDFQQLVLAILADSVQ 316

Query: 299 LR 300
            R
Sbjct: 317 AR 318


>gi|16126782|ref|NP_421346.1| D-alanine--D-alanine ligase B [Caulobacter crescentus CB15]
 gi|221235562|ref|YP_002517999.1| D-alanine--D-alanine ligase [Caulobacter crescentus NA1000]
 gi|22095565|sp|Q9A5A9|DDL_CAUCR RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|13424106|gb|AAK24514.1| D-alanine--D-alanine ligase B [Caulobacter crescentus CB15]
 gi|220964735|gb|ACL96091.1| D-alanine--D-alanine ligase [Caulobacter crescentus NA1000]
          Length = 324

 Score =  330 bits (847), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 149/303 (49%), Positives = 204/303 (67%), Gaps = 5/303 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG SSER+VSL SG ACA ALE  G KVS+ID    V  VLA  KPD+ FN LHG
Sbjct: 16  IAVLLGGPSSERKVSLVSGAACAEALERLGAKVSRIDPGPDVAQVLAATKPDMVFNALHG 75

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG VQ +LE L++PYTHSG+LASAL+MDK ++K V+++ GV V    L NR  +  
Sbjct: 76  EWGEDGCVQGVLETLKLPYTHSGVLASALAMDKAKAKAVLAAAGVTVPGGGLFNRHDVAR 135

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            H++ PPYV+KP   GSS+G+ +IK+  + P + + + SW  G+++++E Y+ G+EL   
Sbjct: 136 DHVLQPPYVVKPNAEGSSVGVFIIKEGANRPPEEVGAPSWTFGEEVMVEPYIQGMELAVA 195

Query: 181 VMGD----ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           V+G+     +L VT+I    + FY YE KYS   S HVLPA IP  +     R+A LAH 
Sbjct: 196 VLGESNGPRALAVTDIR-ASTGFYDYEAKYSEGGSIHVLPAPIPNAVRDRAMRMAELAHT 254

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           A+GCRG++RSDF +D ++  +  LE+N QPGMTP S+ PE A + G  F +L+LW+VEDA
Sbjct: 255 ALGCRGVTRSDFRYDDINDLLVLLEVNTQPGMTPTSLAPEQADHVGIPFDQLVLWIVEDA 314

Query: 297 SCL 299
              
Sbjct: 315 YAR 317


>gi|295106391|emb|CBL03934.1| D-alanine--D-alanine ligase [Gordonibacter pamelaeae 7-10-1-b]
          Length = 315

 Score =  330 bits (846), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 117/304 (38%), Positives = 182/304 (59%), Gaps = 12/304 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-DRSVGLVLAHLKPDLAFNVLH 59
           +A+L+GGIS EREVSL+SG+    AL +AGF+V+ +D  D+     L     D+AF  LH
Sbjct: 12  VALLVGGISGEREVSLASGEGAHQALTEAGFQVTTLDPADKDDLKTLIDGGFDVAFICLH 71

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN-RFTM 118
           G +GEDG +Q +LE++ +PY  SG+ +SAL+MDK++SK    + G+   PSI +    T+
Sbjct: 72  GKYGEDGTLQGMLEMIGLPYIGSGVWSSALAMDKVKSKVFYQAAGISTPPSITLGVNDTV 131

Query: 119 DSQHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175
           D + +   +    V+K    GS+LG+ +++   +I   +    +    +++L+E+Y+ G 
Sbjct: 132 DVEEIVGSLGERCVVKSATEGSALGVFIVEGHDAIQEAI--EKARELDNEILVERYIKGK 189

Query: 176 ELTCGVMGD---ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
           ELT  V+G+    +L + EI VP +DFY YE KY    S H+ PA +  +  +++Q +A 
Sbjct: 190 ELTVAVIGNDNPRALPIIEI-VPVNDFYDYEAKYKPGASQHLCPAPLSEETTRQIQNMAV 248

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
            AH+A+ C G+SRSDF+ D      + LE N  PGMT  S+ P+ A  AG SF EL   +
Sbjct: 249 QAHKALECAGVSRSDFILD-DEGDWWILETNTIPGMTGTSLLPDAARAAGISFPELCTML 307

Query: 293 VEDA 296
           +E A
Sbjct: 308 IEFA 311


>gi|319791670|ref|YP_004153310.1| D-alanine/D-alanine ligase [Variovorax paradoxus EPS]
 gi|315594133|gb|ADU35199.1| D-alanine/D-alanine ligase [Variovorax paradoxus EPS]
          Length = 323

 Score =  330 bits (846), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 106/307 (34%), Positives = 162/307 (52%), Gaps = 13/307 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVS+ SG     AL   G      D      + L        F VLHG
Sbjct: 12  VAVLFGGSSAEREVSMMSGTGVLEALRSRGVDAHAFDPSERDLVELKREGFARCFVVLHG 71

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV------N 114
             GEDG VQ  LELL IPYT SG++AS+++MDK+ +K++  + G+P    + +       
Sbjct: 72  RHGEDGTVQGALELLGIPYTGSGVMASSVAMDKVMTKRIWQADGLPTPKYVRLAFDQQSR 131

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
              M    ++  P ++KP + GSS+G+  ++    +   +  S+ ++    +L E++++G
Sbjct: 132 EQIMVVPDVLGLPLIVKPPREGSSIGVTKVEGYSQMQDAVTLSAKYDAD--VLCEEFIEG 189

Query: 175 IELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            E+TC V+G      +L V  IA P+   Y Y+ KY +    +  P+ +P D   E+QR+
Sbjct: 190 EEVTCAVLGQGLDARALPVVRIAAPE-GAYDYQNKYFTDVVQYKCPSGLPADEEHEIQRI 248

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
              A+  +GCRG  R+D +     RK F LE+N  PGMT  S+ P  A  AG  + EL L
Sbjct: 249 TLAAYHTLGCRGWGRADVMIRASDRKPFLLEMNTSPGMTSHSLVPMSARAAGIPYEELCL 308

Query: 291 WMVEDAS 297
            ++  AS
Sbjct: 309 RVLASAS 315


>gi|325266251|ref|ZP_08132930.1| D-alanine-D-alanine ligase B [Kingella denitrificans ATCC 33394]
 gi|324982213|gb|EGC17846.1| D-alanine-D-alanine ligase B [Kingella denitrificans ATCC 33394]
          Length = 308

 Score =  330 bits (846), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 114/303 (37%), Positives = 164/303 (54%), Gaps = 5/303 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSERE+SL SGKA   AL+  G      D        L     D+AFN+LHG
Sbjct: 7   VAVLMGGFSSEREISLISGKAILEALQSRGVDAHAFDPAEMELSELKTQNFDMAFNILHG 66

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--M 118
            +GEDG VQ  LE L IPYT  G+LASAL MDK R K + S+ G+PV P  +++  +   
Sbjct: 67  TYGEDGTVQGALEALGIPYTGCGVLASALGMDKYRCKLIWSALGLPVPPFEVLHDDSDFA 126

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
             +  +  P  IKP   GSS+G++ IK+   +     Q         +L EQ++ G E T
Sbjct: 127 AVEQKLGLPLFIKPAAEGSSVGVVKIKQAGELAQQYAQLRDMGLHGVILAEQFMSGGEYT 186

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           CGV    +L    I +P+++FY YE KY   ++ ++ P+ +  +  + +Q LA  A  AI
Sbjct: 187 CGVFNGKALPSIHI-IPQTEFYDYEAKYLRDDTVYLCPSDLSGEDERTMQHLAQEAFAAI 245

Query: 239 GCR-GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           G    + R DF     +  ++ LE N  PGMT  S+ P+ A   G SF +L + ++++A 
Sbjct: 246 GGGNTLGRIDF-LKDSAGCLYILEANTLPGMTSHSLIPKSALQIGISFADLCIAVLQNAQ 304

Query: 298 CLR 300
             R
Sbjct: 305 DER 307


>gi|145588357|ref|YP_001154954.1| D-alanine--D-alanine ligase [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
 gi|190359204|sp|A4SV76|DDL_POLSQ RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|145046763|gb|ABP33390.1| D-alanine--D-alanine ligase [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
          Length = 337

 Score =  330 bits (846), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 106/299 (35%), Positives = 161/299 (53%), Gaps = 9/299 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VL+GG S ERE+SL SG     AL   G      D        LA  K D  F  LHG
Sbjct: 30  VGVLLGGRSGEREISLMSGNGVLQALLSKGVDAHGFDPGLRNPTELATEKFDRIFISLHG 89

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG +Q +LELLE+PYT SG+LASAL++DK+ +KQ+  S G+       +   +  +
Sbjct: 90  RFGEDGTIQGLLELLELPYTGSGVLASALAIDKIATKQIWISNGLSTPEYEELTAKSDWN 149

Query: 121 Q--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                +  P ++KP   GSSLG+  +K  + +P     ++      +++ E  + G ELT
Sbjct: 150 AVVKHLGLPLIVKPAHEGSSLGLTKVKSVEELPAAYQLAA--GLDKKVIAETCIVGDELT 207

Query: 179 CGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
           C ++G      +L V +I  P+++ Y +  KY S  + ++ P  +  +I   VQ LA  A
Sbjct: 208 CPLVGQGNSAEALPVIKIIPPQAN-YDFHNKYFSDETQYLCPTGLTAEINAAVQDLALAA 266

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +Q +GCR   R+D + D  + K + LE+N  PGMT  S+ P  A  AG  + +L+LW++
Sbjct: 267 YQTLGCRTWGRADVMLDKKTGKPYLLEMNTSPGMTSHSLVPMAAKAAGVEYADLVLWLL 325


>gi|302036135|ref|YP_003796457.1| d-alanine-d-alanine ligase [Candidatus Nitrospira defluvii]
 gi|300604199|emb|CBK40531.1| D-alanine-D-alanine ligase [Candidatus Nitrospira defluvii]
          Length = 332

 Score =  330 bits (846), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 103/307 (33%), Positives = 161/307 (52%), Gaps = 15/307 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VLMGG SSEREVSL +G+A   +L  +G+    IDV   +   L     ++ F  LHG
Sbjct: 17  IGVLMGGQSSEREVSLKTGEAVYRSLVRSGYDAVAIDVGPDLSKTLQEQAVEIGFLALHG 76

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119
             GEDG +Q  LE L IPYT SG+ ASA+ M K+ +K  +++ G+PV    +V R     
Sbjct: 77  PGGEDGAIQGFLETLGIPYTGSGVRASAIGMHKVVTKTELAAQGIPVPRGTVVLRGMAPS 136

Query: 120 -----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
                S   +  P V+KP   GS++G+ +++K       L   ++  + ++ ++E ++ G
Sbjct: 137 LNRVLSTCKLKLPVVVKPASQGSTIGVTIVRKPSQWKEAL--RTAHRYDEEAMVEAFIPG 194

Query: 175 IELTCGVMGDAS-----LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
            E+T  ++G        L   EI  P   FY +  KY    + ++ PA +   + +++++
Sbjct: 195 HEVTVSLLGGPDGVVTGLPAVEIVAPD-GFYDFSAKYEKGRTQYLCPAPLSAAVTRQIKQ 253

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
            A   +QA+GC G +R DF   P   K F LEIN  PGMT  S+ P  A  AG S+  L 
Sbjct: 254 FAIRTYQALGCSGAARVDFRVTPK-GKPFVLEINTVPGMTETSLLPMAAGKAGLSYDALT 312

Query: 290 LWMVEDA 296
             +++ A
Sbjct: 313 ERILQSA 319


>gi|296134866|ref|YP_003642108.1| D-alanine/D-alanine ligase [Thiomonas intermedia K12]
 gi|295794988|gb|ADG29778.1| D-alanine/D-alanine ligase [Thiomonas intermedia K12]
          Length = 342

 Score =  330 bits (846), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 104/303 (34%), Positives = 160/303 (52%), Gaps = 9/303 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG+S+EREVSL SGK   +AL+  G      D        L       AF  LHG
Sbjct: 15  VAVLMGGLSAEREVSLMSGKGVLAALQSRGVDAFAFDPSVDDLAALKSFGAQRAFINLHG 74

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--FTM 118
            +GEDG VQ  LELL IPYT  G+LASAL++DK  +K++     +       V       
Sbjct: 75  RWGEDGTVQGALELLGIPYTGPGVLASALAIDKAMTKRLWHFENLSTPKWREVGTLIEAR 134

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   +  P + K    GS+LG+     +  +    L+++ +    ++L+EQ+++G E+T
Sbjct: 135 AAAAELGFPLIFKATHEGSTLGLKRADSEAEVQAAYLEAARF--DSRVLVEQFIEGDEVT 192

Query: 179 CGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
           C V+G      +L +  I  P    Y YE KY S ++ ++ P+++P D    +Q L   +
Sbjct: 193 CAVIGAGDQARALPLIRIVAP-GGNYDYEHKYFSDDTRYICPSELPADEEARIQDLVLHS 251

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           ++ +GCRG +R+D +     R+ F LEIN  PGMT  S+ P  A  AG  + +L L ++ 
Sbjct: 252 YRTLGCRGWARADVMIRATDRQPFLLEINTSPGMTSHSLVPMAARVAGLEYADLCLLILS 311

Query: 295 DAS 297
            A+
Sbjct: 312 MAA 314


>gi|326203283|ref|ZP_08193148.1| D-alanine/D-alanine ligase [Clostridium papyrosolvens DSM 2782]
 gi|325986541|gb|EGD47372.1| D-alanine/D-alanine ligase [Clostridium papyrosolvens DSM 2782]
          Length = 376

 Score =  330 bits (846), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 90/357 (25%), Positives = 167/357 (46%), Gaps = 63/357 (17%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           +A++ GG SSE EVS  S ++    ++   ++V  I + +    +               
Sbjct: 6   VAIIFGGQSSEHEVSRVSAQSVIENIDKEKYEVEIIGITKKGQWLKYNGPVEKIGSGEWE 65

Query: 47  ----------------------------------AHLKPDLAFNVLHGNFGEDGLVQAIL 72
                                                  D+ F VLHG  GEDG +Q + 
Sbjct: 66  AVAHNKLLEGKSSENETASEITNVNSARQVIAGNTKKPIDVVFPVLHGCNGEDGTIQGLF 125

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHL 123
           EL  IPY   G+L +A+ MDK  SK +    G+P    ++ NR  +++         +  
Sbjct: 126 ELAGIPYVGCGVLGAAVGMDKAYSKIIFEKEGLPQGDYLVFNRKQVNNRLEEAVAQVEST 185

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           ++ P  +KP   GSS+G+      +S+   L+ ++   +  ++L+E+++DG E+ C V+G
Sbjct: 186 LTYPCFVKPANAGSSVGVNKASDRESLEKALIIAA--KNDRRILVEEFIDGREIECAVLG 243

Query: 184 DASLDVTEI--AVPKSDFYSYELKYSSLNSTHV-LPAK-IPLDIYKEVQRLAFLAHQAIG 239
           +     + +   VP ++FY YE KY   +S+ V +PA+ +  +  ++++  A  A + + 
Sbjct: 244 NDEPVASTVGEVVPCNEFYDYEAKYQVGDSSKVVIPAENLSTETVEKIREYAVRAFKCLD 303

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           C G+SR DF     +  ++  EIN  PG T +S++P++ A +G  + +L+  ++E A
Sbjct: 304 CAGLSRVDFFVHKDTGAIYINEINTLPGFTSISMYPKLWAASGIPYSQLIDKLIELA 360


>gi|89894325|ref|YP_517812.1| hypothetical protein DSY1579 [Desulfitobacterium hafniense Y51]
 gi|89333773|dbj|BAE83368.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 361

 Score =  330 bits (846), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 100/343 (29%), Positives = 164/343 (47%), Gaps = 52/343 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS------------------- 41
           + +L GG S E EVSL+S  +   A++   +++  I + ++                   
Sbjct: 6   IIILFGGQSGEHEVSLNSASSVLKAIDQEKYEIETIGIAKNGQWHWGIRPEQWQQDPALE 65

Query: 42  -VGLVLAHL------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
            + ++LAH                   K  L F VLHG FGEDG +Q + E+  IPY  S
Sbjct: 66  GIPVILAHDPTNPRFIALDGSSLPQDGKFALIFPVLHGPFGEDGTIQGLFEMANIPYAGS 125

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPL 133
           G+L SAL MDK R K V +  G+P  P I V R  +         + +H +  P  +KP 
Sbjct: 126 GVLGSALGMDKDRMKAVFTEAGLPQAPYITVLRTMLQKPMEQLLDNIEHSLGYPCFVKPA 185

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS--LDVTE 191
             GSS+GI   +  + +   L  ++   +  +L++EQ + G E+   V+G+      +  
Sbjct: 186 NLGSSVGISKARNKEELIQALQLAA--EYDRKLVVEQNIVGREIELSVLGNEDAQASIPG 243

Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
             +P  DFY YE KY    S  V+PA +  ++ + +Q  A  A +A+   G+SR DF   
Sbjct: 244 EILPAKDFYDYEAKYIDTGSQLVIPAPLAPEVVRSLQEKAVAAFKAVEACGLSRVDFFVT 303

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
               +++  EIN  PG T +S++P++   +G  + EL+  ++E
Sbjct: 304 E-GSQIYINEINTMPGFTQISMYPKLWEASGIPYTELITRLIE 345


>gi|218248108|ref|YP_002373479.1| D-alanyl-alanine synthetase A [Cyanothece sp. PCC 8801]
 gi|226729271|sp|B7JZB2|DDL_CYAP8 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|218168586|gb|ACK67323.1| D-alanine/D-alanine ligase [Cyanothece sp. PCC 8801]
          Length = 351

 Score =  330 bits (846), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 101/347 (29%), Positives = 169/347 (48%), Gaps = 49/347 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALED----AGFKVSQIDVDRSVGL--------VLAH 48
           + +L GG S E EVSL+S KA A+AL+       + +  I + ++           VL  
Sbjct: 6   VGLLFGGRSGEHEVSLNSAKAIATALQSGENPQKYDIIPIYIQKNGVWQAGDTAQQVLND 65

Query: 49  LKP---------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87
            KP                     D+ F +LHG  GEDG +Q +L L++ P+  SG+L S
Sbjct: 66  AKPLPCEDATSQQLWTFPPQVSEVDVWFPILHGPNGEDGTLQGLLTLMQTPFVGSGVLGS 125

Query: 88  ALSMDKMRSKQVVSSCGVPVCPSILVNRFTM------------DSQHLISPPYVIKPLKG 135
           A+ MDK+  K   +  G+P    I V+R  +            + +  +  P  +KP   
Sbjct: 126 AVGMDKIAMKMAFAQAGLPQVKYIAVDRAQIWSNPCVFPKLCDEIEQRLGYPCFVKPANL 185

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195
           GSS+GI  ++    +   L  ++S++   +++IE  V   E+ C V+G+ +   + I   
Sbjct: 186 GSSVGIAKVRSRSELEKALDSAASYDR--RIVIETGVKAREVECAVLGNENPKASVIGEI 243

Query: 196 --KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
              SDFY YE KY+   +   +PA++P  I  ++Q +A  A +A+   G++R DF +   
Sbjct: 244 TYNSDFYDYEAKYTDGMAQMHIPAQLPDAIVTQIQDMAIQAFKAVDGAGLARVDFFYVED 303

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           S++VF  EIN  PG T  S++P++    G  F EL+  +++ A   +
Sbjct: 304 SQEVFINEINTLPGFTAFSMYPQLWKETGVPFAELVDQLIQLALERK 350


>gi|121606304|ref|YP_983633.1| D-alanine--D-alanine ligase [Polaromonas naphthalenivorans CJ2]
 gi|190359203|sp|A1VST4|DDL_POLNA RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|120595273|gb|ABM38712.1| D-alanine--D-alanine ligase [Polaromonas naphthalenivorans CJ2]
          Length = 325

 Score =  329 bits (845), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 103/306 (33%), Positives = 162/306 (52%), Gaps = 13/306 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG S+ERE+SL SG     AL   G      D        L        F  LHG
Sbjct: 11  VAVLMGGRSAEREISLMSGSGVVQALRSQGIDAHAFDPAERDLGELKTGGFARCFIALHG 70

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG VQ  LELL IPYT SG++AS++++DK+ +K+++ S  +P    +L+ R     
Sbjct: 71  RFGEDGTVQGALELLGIPYTGSGVMASSMAIDKVMTKRLLLSESLPTPRYVLLRRGGYSP 130

Query: 121 QHL------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
             +      +  P ++KP + GSSLG+  + +  ++   +  +        +L EQ++ G
Sbjct: 131 AQVDAIVDTLGLPLIVKPAREGSSLGLSKVTERAAMAAAVALAE--KMDADILCEQFISG 188

Query: 175 IELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            E+TC V+G      +L V  I  P+ + Y Y+ KY +  + +++P  +P      +Q+L
Sbjct: 189 DEVTCPVLGTGEQARALPVIRIVAPEGN-YDYQNKYFTDTTQYLVPCGLPAGEEAAIQQL 247

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
              A + + CRG +R+D + D  +RK + LEIN  PGMT  S+ P  A  AG S+  L +
Sbjct: 248 VLQAFRTLNCRGWARADVMIDQATRKPYLLEINTSPGMTGHSLVPMSARAAGISYEALCV 307

Query: 291 WMVEDA 296
            +++ A
Sbjct: 308 EVLKTA 313


>gi|188996366|ref|YP_001930617.1| D-alanine/D-alanine ligase [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188931433|gb|ACD66063.1| D-alanine/D-alanine ligase [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 299

 Score =  329 bits (845), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 101/299 (33%), Positives = 166/299 (55%), Gaps = 8/299 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---DRSVGLVLAHLKPDLAFNV 57
           +A+L GG S ERE+S+ SGKA   AL   G+     D+   D+ +  +L   KPDLAF V
Sbjct: 4   IALLYGGYSREREISIKSGKAVEKALNQLGYDYKVFDIIERDKFIKEIL-EYKPDLAFIV 62

Query: 58  LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117
           LHG  GEDG +QAILE L IPYT S +  S ++MDK+ +K  + +  +P    I      
Sbjct: 63  LHGKGGEDGTIQAILEFLGIPYTGSDMKTSVIAMDKVLTKMYLKNFDIPTPDWIFFTEEK 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
               +    P V+K    GSS+G+ ++   Q     + +   +N  D++LIE+++ G EL
Sbjct: 123 EALNYRPDFPAVVKAPTEGSSIGVYIVNNQQEYENAVKEV--FNLDDKVLIEKFIKGREL 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           T  ++ D   D+ E+ V +  FY +  KY +  + ++ PA++  D+YK VQ L    ++ 
Sbjct: 181 TVSILDDEVFDIVEVVVSE-GFYDFNNKYITGKTQYICPAQLDEDVYKNVQGLGHKVYKL 239

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           + C+G +R D +     +  + LE+N  PGMT  S+ P+ A+  G +F +L+  +++++
Sbjct: 240 LNCKGPARVDIIL-ENDKNPYVLEVNTIPGMTEFSLLPKAASARGITFNQLVEKIIKNS 297


>gi|15614184|ref|NP_242487.1| D-alanyl-D-alanine ligase A [Bacillus halodurans C-125]
 gi|20137662|sp|Q9KCF0|DDL_BACHD RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|10174238|dbj|BAB05340.1| D-alanyl-D-alanine ligase A [Bacillus halodurans C-125]
          Length = 305

 Score =  329 bits (845), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 119/300 (39%), Positives = 173/300 (57%), Gaps = 10/300 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSLSSGK    AL+  G +V  ID        L  L  DL F  LHG
Sbjct: 3   IAVLYGGTSAEREVSLSSGKGIMEALKANGHEVIGIDFHPDQVRDLVDLDVDLVFIGLHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG VQA+L+LL IPY  +G+  SAL+MDK ++K      G+ V   ++++ FT D+
Sbjct: 63  RLGEDGKVQALLDLLNIPYVGTGVQGSALAMDKAKAKLFFEKAGIRVAEEVVLHSFTYDA 122

Query: 121 QHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
                  + P V+KP + GS++G+ V + ++ +   +    ++ H D +LIE+++ G E+
Sbjct: 123 NAFNFTGTYPVVVKPNQEGSTIGLTVAETEEELLQGI--EEAFRHDDTILIEEFIAGTEV 180

Query: 178 TCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           T  V+G+     SL V EI VPK+  Y YE KY+   S H++PA+I  +    VQ+ A  
Sbjct: 181 TVAVLGNKGEERSLPVVEI-VPKNKLYDYESKYAPGMSEHIVPARISEEHTAYVQQAAVR 239

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           AHQA+GC   SR DF+          L++N  PGMTP S++P+ A   G S+ E++   V
Sbjct: 240 AHQALGCDVYSRVDFIVPNDGSDPVILKVNTLPGMTPTSLYPDAAKGVGMSYEEMIQTFV 299


>gi|298243533|ref|ZP_06967340.1| D-alanine/D-alanine ligase [Ktedonobacter racemifer DSM 44963]
 gi|297556587|gb|EFH90451.1| D-alanine/D-alanine ligase [Ktedonobacter racemifer DSM 44963]
          Length = 382

 Score =  329 bits (845), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 90/355 (25%), Positives = 165/355 (46%), Gaps = 61/355 (17%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           + ++ GG S E EVSL+S K+  + +    ++V  I ++++   +L              
Sbjct: 14  IGLIYGGRSGEHEVSLNSAKSVIANINSDKYEVVPIAINKTGKWLLGVEPTRMIEAEKST 73

Query: 47  ----------------------------------AHLKPDLAFNVLHGNFGEDGLVQAIL 72
                                                  D+ F V+HG  GEDG +Q +L
Sbjct: 74  QAEAELEQSTAVTFTGDPNLRRLIPVNGSQEQLENQGAIDVIFPVMHGTTGEDGALQGML 133

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHL 123
           ++ ++PY   G+L SAL MDK + K +    G+PV   ++  R   +          +  
Sbjct: 134 DMADVPYVGCGVLGSALGMDKEKMKMIFERAGLPVGEYLVYRRNQWERDPESILNAIEEQ 193

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           ++ P  +KP+  GSS+GI        +   +  ++   +  +++IE+ ++  E  C V+G
Sbjct: 194 LNYPCFVKPVNLGSSVGINKAHDRAELVHAINVAA--EYDRKVIIERNINCREFECAVLG 251

Query: 184 DASLDVTEIA--VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241
           +    V+ +   VP ++FY Y+ KY    S  + PA+I  ++ +E++R A +A  ++   
Sbjct: 252 NDEPIVSVMGEIVPSNEFYDYKAKYVDGKSQVITPAEISQELSQEMRRQALIAFTSLDLS 311

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           G+SR DF  +  + KV+  E+N  PG T VS++P +   +G  + EL+  +VE A
Sbjct: 312 GLSRIDFFLEKETNKVYINEVNTLPGFTQVSMYPMLWEASGIPYPELIDRLVELA 366


>gi|238761558|ref|ZP_04622533.1| D-alanine--D-alanine ligase [Yersinia kristensenii ATCC 33638]
 gi|238700072|gb|EEP92814.1| D-alanine--D-alanine ligase [Yersinia kristensenii ATCC 33638]
          Length = 289

 Score =  329 bits (845), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 96/291 (32%), Positives = 154/291 (52%), Gaps = 13/291 (4%)

Query: 15  SLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILEL 74
           SL SG+A  + L +AG     +D        L     D  F  LHG  GEDG +Q +LE 
Sbjct: 2   SLLSGQAVLAGLREAGIDAHGVDTKDFPVTQLKEQGFDKVFIALHGRGGEDGTLQGVLEF 61

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ---------HLIS 125
           L++PYT SG++ASAL+MDK+R+K V  + G+P+ P + +NR   ++            + 
Sbjct: 62  LQLPYTGSGVMASALTMDKLRTKLVWQASGLPISPYVALNRQQFETLSSEELAACVAKLG 121

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            P ++KP   GSS+G+  + +   +   L++  ++ H   +LIE+++ G E T  ++G+ 
Sbjct: 122 LPLIVKPSHEGSSVGMSKVDRASELHAALVE--AFRHDTDVLIEKWLSGPEFTVAILGED 179

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
            L    I  P   FY YE KY S  + +  P+ +  ++ +++  LA  A+QA+GC G  R
Sbjct: 180 VLPSIRIQAP-GVFYDYEAKYLSDETQYFCPSGLSAELEQQLAELALQAYQALGCSGWGR 238

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            D + D      + LE+N  PGMT  S+ P  A   G SF +L+  ++  A
Sbjct: 239 VDVMQD-SDGGFYLLEVNTSPGMTSHSLVPMAARQYGLSFSQLVARILMLA 288


>gi|197124219|ref|YP_002136170.1| D-alanine--D-alanine ligase [Anaeromyxobacter sp. K]
 gi|229485856|sp|B4UES4|DDL_ANASK RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|196174068|gb|ACG75041.1| D-alanine/D-alanine ligase [Anaeromyxobacter sp. K]
          Length = 308

 Score =  329 bits (845), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 115/301 (38%), Positives = 168/301 (55%), Gaps = 8/301 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG SSEREVSL +G ACA AL   G  V  +DVD  V   L   + ++AF  LHG
Sbjct: 9   VAVLYGGRSSEREVSLRTGAACADALRQKGHDVVLLDVDLEVAARLRAERVEVAFVALHG 68

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG +Q +LE + IPYT SG+LASA+ MDK  SK +  S G+ V    +  R +  S
Sbjct: 69  RFGEDGSIQGLLESMAIPYTGSGVLASAMGMDKTVSKAIFRSLGLAVADYRVFPRASAGS 128

Query: 121 ----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
                     P V+KP   GSS+G+ ++ +   +      ++S  H   +++E+YV G E
Sbjct: 129 IGVGDLPFGLPCVVKPAGEGSSVGVHLVNEAAELGPACRDAAS--HAGDVIVERYVKGTE 186

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +   V+   +L   EI VP + FY Y  KY++  + +  PA++P    + V   A  AH+
Sbjct: 187 VDVAVLDGKALGAIEI-VPANAFYDYAAKYTAGTTKYFYPARLPEAHVRAVMEAAEAAHR 245

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            IGC G++R DF+        + LE+N  PGMT  S+ P++AA  G SF +L   +++ A
Sbjct: 246 GIGCSGVTRVDFIV-AGDGTPYILEVNTLPGMTATSLVPKIAAGLGLSFPDLCERILDGA 304

Query: 297 S 297
           +
Sbjct: 305 A 305


>gi|220918999|ref|YP_002494303.1| D-alanine/D-alanine ligase [Anaeromyxobacter dehalogenans 2CP-1]
 gi|254767715|sp|B8J8F1|DDL_ANAD2 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|219956853|gb|ACL67237.1| D-alanine/D-alanine ligase [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 308

 Score =  329 bits (845), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 115/301 (38%), Positives = 170/301 (56%), Gaps = 8/301 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG SSEREVSL +G ACA AL   G +V  +DVD  V   L   + ++AF  LHG
Sbjct: 9   VAVLYGGRSSEREVSLRTGAACADALRQKGHEVVLLDVDLEVAARLRAERVEVAFVALHG 68

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG +Q +LE + IPYT SG+LASA+ MDK  SK +  S G+ V    +  R +  S
Sbjct: 69  RFGEDGSIQGLLESMAIPYTGSGVLASAMGMDKTVSKAIFRSLGLAVADYRVFPRASAGS 128

Query: 121 ----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
                     P V+KP   GSS+G+ ++ +   +      ++S  H   +++E+YV G E
Sbjct: 129 IGVGDLPFGLPCVVKPAGEGSSVGVHLVNEAAELGPACRDAAS--HAGDVIVERYVKGTE 186

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +   V+   +L   EI VP + FY Y  KY++  + +  PA++P    + V + A  AH+
Sbjct: 187 VDVAVLDGKALGAIEI-VPANAFYDYAAKYTAGTTKYFYPARLPEAHVRAVMQAAEAAHR 245

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            IGC G++R DF+        + LE+N  PGMT  S+ P++AA  G SF +L   +++ A
Sbjct: 246 GIGCSGVTRVDFIV-AGDGTPYILEVNTLPGMTATSLVPKIAAGLGLSFPDLCERILDGA 304

Query: 297 S 297
           +
Sbjct: 305 A 305


>gi|221632100|ref|YP_002521321.1| D-alanine--D-alanine ligase [Thermomicrobium roseum DSM 5159]
 gi|221156428|gb|ACM05555.1| D-alanine--D-alanine ligase [Thermomicrobium roseum DSM 5159]
          Length = 372

 Score =  329 bits (845), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 92/348 (26%), Positives = 162/348 (46%), Gaps = 54/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           +AV+ GG S E +VSL S +A    ++   F++  + + R    ++              
Sbjct: 7   VAVIFGGQSGEHDVSLRSARAILRHIDRERFEIVPVGITREGRWLIGGDPLRELATASRL 66

Query: 50  ------------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPY 79
                                         + D+ F VLHG +GEDG +Q +LEL  IPY
Sbjct: 67  PLELEPVSSGAGSAPATGESALALPGSLPGEIDVVFPVLHGPYGEDGTIQGLLELAGIPY 126

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH---------LISPPYVI 130
              G+LASA++MDK  +K++ +S G+     I         QH          +  P  +
Sbjct: 127 VGCGVLASAVAMDKPTAKRLFASVGLEQARWIAFTWHEWQCQHQTLLARIERELGYPCFV 186

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--D 188
           KP   GSS+G+   ++ + +   +  +S   +  ++++E+ +D  EL   V+G+      
Sbjct: 187 KPANLGSSVGVSKARRREELLAAIELAS--RYDRRIVVEEAIDARELEVSVLGNEEPVAS 244

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           +    VP  +FY YE KY   +S  ++PA I  +    V+R+A  A + I   G++R DF
Sbjct: 245 IVGEIVPSREFYDYEAKYIDPHSQLLIPAPISEEQAATVRRMALEAFRVIDGAGMARVDF 304

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             +  + ++   E+N  PG T +S++P++   +G  FR+L+  ++E A
Sbjct: 305 FLERSTGRILINEVNTIPGFTAISMYPKLWEASGLCFRDLITRLIELA 352


>gi|229542519|ref|ZP_04431579.1| D-alanine/D-alanine ligase [Bacillus coagulans 36D1]
 gi|229326939|gb|EEN92614.1| D-alanine/D-alanine ligase [Bacillus coagulans 36D1]
          Length = 355

 Score =  329 bits (845), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 96/340 (28%), Positives = 152/340 (44%), Gaps = 47/340 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           + +L GG S+E EVSL + KA   AL+   + +  I +      +               
Sbjct: 5   ICLLYGGKSAEHEVSLQTAKAVIQALDHEKYDIYPIFITTEGDWIKGPLLTGPVETVKQL 64

Query: 47  -------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87
                                   D+ F +LHG  GEDG VQ +LELL +PY  +G+LAS
Sbjct: 65  EFRDGKKMAPNALSTTVSGEKGGYDVIFPLLHGPNGEDGTVQGMLELLNLPYVGNGVLAS 124

Query: 88  ALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSS 138
           +  MDK+  K + +  G+     +   R   ++         +     P  +KP   GSS
Sbjct: 125 SAGMDKVIMKNLFAQAGLDQVKYVSFIRSEWENALETCFQQVEEKTGYPCFVKPANLGSS 184

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--DVTEIAVPK 196
           +GI   K    +     +  ++ +  ++++E+ V   E+  GV+G+      V    V K
Sbjct: 185 VGISKCKNRTELEAAFKE--AFQYDRKIIVEEGVTAREIELGVIGNDDPQCSVAGEIVAK 242

Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256
            DFY Y+ KY    +  ++PA IP  +YK+    A  A +A+ C G+ R+DF      R 
Sbjct: 243 KDFYDYKAKYEDGETALIIPADIPEKVYKKCTEAAITAFKALDCSGLVRADFFVTEDER- 301

Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           V   EIN  PG TP S+FP +   AG  + +L+  ++E A
Sbjct: 302 VIINEINTMPGFTPFSMFPLLWKEAGLDYPQLIEKLIELA 341


>gi|218893501|ref|YP_002442370.1| D-alanine--D-alanine ligase [Pseudomonas aeruginosa LESB58]
 gi|218773729|emb|CAW29543.1| D-alanine--D-alanine ligase [Pseudomonas aeruginosa LESB58]
          Length = 319

 Score =  329 bits (844), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 103/302 (34%), Positives = 160/302 (52%), Gaps = 6/302 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL SG     +L  A      IDV   +   L   K D AF +LHG
Sbjct: 21  VAVLFGGKSAEREVSLKSGAMVLQSLLAARVDAFGIDVGEDLLQRLVEEKIDRAFIILHG 80

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118
             GEDG +Q +LE   IPYT SG+LASAL+MDK+R+K+V  S G+P     ++       
Sbjct: 81  RGGEDGSMQGLLECAGIPYTGSGVLASALAMDKLRTKRVWLSLGLPTPDYAVLASEDDCR 140

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           ++   +  P ++KP   GSS+G+  +     +     +++   +  Q+L+EQ++ G E T
Sbjct: 141 EAAQRLGFPLIVKPAHEGSSIGMAKVGGLVELIAAWREAA--RYDSQVLVEQWISGPEFT 198

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +    L    +  P + FY Y+ KY + ++ + +P  +      E++ L   A  A+
Sbjct: 199 VATLRGQVLPAIRLGTPHT-FYDYDAKYLASDTRYQVPCGLDEAKESELKELTARACDAL 257

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           G +G  R+D + D   R  + LE+N  PGMT  S+ P  A  AG  F++L+L ++ D+  
Sbjct: 258 GIQGWGRADVMQDAEGR-FWLLEVNTAPGMTDHSLVPMAARAAGLDFQQLVLAILADSRE 316

Query: 299 LR 300
            R
Sbjct: 317 AR 318


>gi|153006725|ref|YP_001381050.1| D-alanine--D-alanine ligase [Anaeromyxobacter sp. Fw109-5]
 gi|190359108|sp|A7HH70|DDL_ANADF RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|152030298|gb|ABS28066.1| D-alanine--D-alanine ligase [Anaeromyxobacter sp. Fw109-5]
          Length = 308

 Score =  329 bits (843), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 115/301 (38%), Positives = 166/301 (55%), Gaps = 8/301 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG SSEREVSL +G ACA AL   G  V+ +DVD  +   L  L+ D+AF  LHG
Sbjct: 9   VAVLYGGRSSEREVSLRTGAACADALRARGHDVTLVDVDAELPARLRELRVDVAFVALHG 68

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG VQ +LE + IPYT SG+ ASA+ MDK  SK +  + G+ V             
Sbjct: 69  RWGEDGCVQGLLECMGIPYTGSGVTASAMGMDKTVSKAIFKALGLDVIEYRAFPPARAAE 128

Query: 121 QHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
             L       P V+KP   GSS+G+ ++K   +  L      +  +   +++E+YV G E
Sbjct: 129 IDLRDLPFGVPCVVKPAGEGSSVGVQIVK--DAARLADACREAARYKGDVVVERYVKGTE 186

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +   V+   +L   EIA P ++FY Y  KY++  + +  PA+IP      V   A  AH+
Sbjct: 187 VNVAVLEGKALGAIEIA-PANEFYDYAAKYTAGTTRYYYPARIPEAHASRVMAAAEAAHR 245

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            +GC G++R DF+  P     F LE+N  PGMT  S+ P++AA  G +F EL   +++ A
Sbjct: 246 GLGCSGVTRVDFIVAP-DGTPFILEVNTLPGMTATSLVPKIAAGLGLAFPELCERILDGA 304

Query: 297 S 297
           +
Sbjct: 305 A 305


>gi|194364382|ref|YP_002026992.1| D-alanine--D-alanine ligase [Stenotrophomonas maltophilia R551-3]
 gi|194347186|gb|ACF50309.1| D-alanine/D-alanine ligase [Stenotrophomonas maltophilia R551-3]
          Length = 320

 Score =  329 bits (843), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 116/298 (38%), Positives = 167/298 (56%), Gaps = 7/298 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG SSEREVSL SG+    AL+  G     +D   ++   LA    D  FN+LHG
Sbjct: 20  VAVLLGGSSSEREVSLDSGRNVLEALQSRGVDAFAVDGIPALAKALAAGGIDRVFNILHG 79

Query: 61  --NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
               GEDG+VQ +++   +PYT S +L SALSMDK+R+KQV  S G+P      V    +
Sbjct: 80  HNGGGEDGIVQGLMDAFGVPYTGSNVLGSALSMDKIRTKQVWLSLGLPTPQYRKVTAEDV 139

Query: 119 DS-QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            +    +  P V+KP   GSS+GI  +  D  +   +  ++   +  QLL+EQ V G EL
Sbjct: 140 HANAAALGLPVVVKPANEGSSVGISRVTDDAGLDEAVALAA--RYDGQLLMEQMVIGDEL 197

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           T  ++GD +L    I VPK  +Y Y  KY + ++ ++ P  +  D   E++R+A  A +A
Sbjct: 198 TVAILGDVALPSIRI-VPKGQWYDYNAKYIAEDTQYLCP-GLDGDAEDEIRRIALAAFRA 255

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
            GCRG  R D + D  S + F LE+N  PGMT  S+ P+ A  AG  F EL+  ++E 
Sbjct: 256 AGCRGWGRVDVMRDRDSGRFFLLEVNTAPGMTSHSLVPKAARQAGIGFEELVWRVLEQ 313


>gi|332977768|gb|EGK14528.1| D-alanine-D-alanine ligase B [Psychrobacter sp. 1501(2011)]
          Length = 330

 Score =  329 bits (843), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 99/296 (33%), Positives = 158/296 (53%), Gaps = 8/296 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AV+ GG S+ER+VSL+SG A   AL+  G + +  D        L +   D  FNVLHG
Sbjct: 36  VAVVYGGSSNERDVSLNSGNAVLKALQSQGVEATHFDPKHQDVTELKN--YDRVFNVLHG 93

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +L+ L+IP T SG+LASA+ MDK+R+KQ+   CG+   P  ++ + T   
Sbjct: 94  RGGEDGQLQGLLDWLQIPQTGSGVLASAIGMDKVRTKQLWLGCGLSTAPFAVLTKDTDWQ 153

Query: 121 Q--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           Q    +  P ++KP+  GSS+G+  +     +P     +S    GD ++ E+++ G E T
Sbjct: 154 QVVSALGLPLIVKPVHEGSSIGMSKVNTLDELPKAFELAS--GCGDVVMAEKWIAGREFT 211

Query: 179 CGVMGDASLDVTEIAVPK-SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
             ++ D +  V  +     S+FY YE KY+  ++ + +P  +  +    +Q L+  A +A
Sbjct: 212 IVIIDDEAYPVIRLQPADVSNFYDYEAKYNRNDTMYHIPCGLSEEEETHLQALSLAAFKA 271

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +   G  R D + D  +   + LEIN  PGMT  S+ P  A   G  F +L   ++
Sbjct: 272 VDAEGWGRIDAMQDE-NGNFWLLEINTVPGMTSHSLVPMAAKARGMDFEQLCWHIL 326


>gi|319789827|ref|YP_004151460.1| D-alanine/D-alanine ligase [Thermovibrio ammonificans HB-1]
 gi|317114329|gb|ADU96819.1| D-alanine/D-alanine ligase [Thermovibrio ammonificans HB-1]
          Length = 292

 Score =  329 bits (843), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 103/293 (35%), Positives = 167/293 (56%), Gaps = 5/293 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +A++ GG S E E+S  S ++   AL+  G +V ++++ + + L LA   PD+AF  LHG
Sbjct: 3   VALIYGGPSPEAEISRKSAESVERALKKLGHRVLKLELTKELPLKLAAESPDVAFLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
           + GEDG VQ +LE++ IPYT  G+  SA+++DK  +K+++ S G+ V   I V R   + 
Sbjct: 63  SPGEDGTVQGLLEIMGIPYTGCGVTTSAVAIDKDLTKRLLKSHGIRVPAGITVFRG-QEI 121

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
                 P ++KP + GSS+G+ ++K  +     +  + +     + LIE++++G E+T G
Sbjct: 122 PEPAELPCIVKPARVGSSVGLSLVKSQEEFERAV--NEALTVDAKALIEEFIEGREITVG 179

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V+    L   EI  P  + Y YE KYS   + +V+PA++     + + RLA  A++ + C
Sbjct: 180 VLNGRPLPPVEILTP-GELYDYEAKYSDSRTEYVVPAELGRKTQERLCRLAEKAYKVLEC 238

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           RG  R DF  D  +  V  LEIN  PG+T  S+ P+ A  AG  F EL+  M+
Sbjct: 239 RGAVRVDFRLDKYNSPV-LLEINTIPGLTERSLLPKAAKAAGMEFEELIAEML 290


>gi|166710654|ref|ZP_02241861.1| D-alanine--D-alanine ligase [Xanthomonas oryzae pv. oryzicola
           BLS256]
          Length = 318

 Score =  329 bits (843), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 110/302 (36%), Positives = 165/302 (54%), Gaps = 11/302 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG SSEREVSL+SG     AL   G     +D   ++   L   + D  FNVLHG
Sbjct: 19  VAVLLGGTSSEREVSLNSGSNVLEALRARGVDAQPVDGIAALAKALVAQQFDRVFNVLHG 78

Query: 61  --NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
               GEDG+VQ ++E   +PYT S +L SALSMDK+R+KQV  S G+       +   T 
Sbjct: 79  HNGGGEDGIVQGLMEAFGVPYTGSDVLGSALSMDKIRTKQVWLSLGLSTPRYARLAAGTS 138

Query: 119 DS-----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
            +        I  P ++KP   GSS+G+  +     +   +  ++   +   LL+EQ ++
Sbjct: 139 AADIHAAAQQIGLPVIVKPANEGSSVGVSRVFDQAQLEDAVTLAA--RYDGALLMEQLIE 196

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           G ELT  V+GDA+L    I VPK  +Y Y  KY + ++ ++ P  +  +   ++++LA  
Sbjct: 197 GDELTVAVLGDAALPSIRI-VPKGQWYDYNAKYIAEDTQYLCP-GLEGEPEAQIRQLALD 254

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           A +A GCRG  R D + D  S +++ LE+N  PGMT  S+ P+ A   G  F EL+  ++
Sbjct: 255 AFRAAGCRGWGRVDVMRDGSSGQLYLLEVNTAPGMTSHSLVPKAARQLGIDFEELVWRVL 314

Query: 294 ED 295
           E 
Sbjct: 315 EQ 316


>gi|114566682|ref|YP_753836.1| D-alanine--D-alanine ligase [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
 gi|122318278|sp|Q0AXT9|DDL_SYNWW RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|114337617|gb|ABI68465.1| D-alanine--D-alanine ligase [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
          Length = 309

 Score =  329 bits (843), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 120/305 (39%), Positives = 174/305 (57%), Gaps = 15/305 (4%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62
           VLMGG S EREVSL SGKA    L+DAG++V  +D        +    PD+ F  LHG  
Sbjct: 6   VLMGGTSEEREVSLKSGKAVYEGLKDAGYEVEALDFTPETIHRIREYSPDVVFITLHGKN 65

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-- 120
           GEDG VQ  LELL IPYT SG+LASA+ M+K+ +K+++S  G+P     ++ +   +   
Sbjct: 66  GEDGTVQGYLELLGIPYTGSGVLASAVCMNKVITKKLLSYEGLPTADFQVIKKRGFNRDL 125

Query: 121 ------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
                       P V+KP   GSS+G  +++K ++I   L  + S    +++L+E+++ G
Sbjct: 126 FNPDLLMEDFGLPLVVKPATQGSSVGTSIVRKRKNIVPALELALSL--DEEILVEKFIAG 183

Query: 175 IELTCGVMGD---ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
            ELT  V+G     +L V EI VPK+++Y YE KY    S H++PA+I  +  + V+ ++
Sbjct: 184 TELTVTVLGKDNLKTLPVIEI-VPKNEYYDYESKYMPGMSDHLIPARISEEERERVEEIS 242

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A+ A+GCRG  R D + D      + LEIN  PGMT  S+ P+ A  AG  F ELL  
Sbjct: 243 CKAYDAVGCRGYGRIDLILD-RGGNPYILEINTLPGMTGTSLVPDAARAAGIKFPELLDL 301

Query: 292 MVEDA 296
            V+ A
Sbjct: 302 FVKMA 306


>gi|332710922|ref|ZP_08430858.1| D-alanine--D-alanine ligase [Lyngbya majuscula 3L]
 gi|332350236|gb|EGJ29840.1| D-alanine--D-alanine ligase [Lyngbya majuscula 3L]
          Length = 348

 Score =  329 bits (843), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 100/341 (29%), Positives = 174/341 (51%), Gaps = 47/341 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASAL----EDAGFKVSQIDVDRSVGLVLAHL------- 49
           + +L GG+S E EVS+SS +A A+AL      + ++V  + + ++               
Sbjct: 6   VGLLFGGVSGEHEVSISSARAIANALCADENASKYEVVPVYIQKNGIWTAVETIAQVLDS 65

Query: 50  --------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
                               + D+ F +LHG  GEDG VQ +L+L+ +P+  SG+L SA+
Sbjct: 66  GTPLESAPSGNVWQFPAVVSEVDVWFPILHGPNGEDGTVQGLLKLMGVPFVGSGVLGSAV 125

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------------QHLISPPYVIKPLKGGS 137
            MDK+  K V +  G+P    + V R  + S            +  ++ PY +KP   GS
Sbjct: 126 GMDKLVMKTVYAQAGLPQVKYMEVLRSQVWSDPCVFTKLCDQIEETLNYPYFVKPANLGS 185

Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP-- 195
           S+GI  ++    +   L +++S++   +L++E+ V G E+ C V+G+     + +     
Sbjct: 186 SVGIAKVRSRSELEAALDKAASYDR--RLIVEEGVVGREVECAVLGNDHPKASVVGEITY 243

Query: 196 KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255
           +SDFY YE KY+   +  ++PA +P D+  ++Q +A  A  A+   G+ R DF +   +R
Sbjct: 244 ESDFYDYETKYTQGQADLLIPAPLPTDVITQIQEMAIQAFTAVDGAGLGRVDFFYVEATR 303

Query: 256 KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           ++F  EIN  PG T  S++P++ A  G SF EL+  +++ A
Sbjct: 304 EIFINEINTLPGFTATSMYPQLWAATGVSFPELVDQLIQLA 344


>gi|84625259|ref|YP_452631.1| D-alanine--D-alanine ligase [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|84369199|dbj|BAE70357.1| D-alanine-D-alanine ligase B [Xanthomonas oryzae pv. oryzae MAFF
           311018]
          Length = 318

 Score =  329 bits (843), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 107/302 (35%), Positives = 163/302 (53%), Gaps = 11/302 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG SSEREVSL+SG     AL   G     +D   ++   L   + D  FNVLHG
Sbjct: 19  VAVLLGGTSSEREVSLNSGSNVLEALRARGVDAQPVDGIAALAKALVAQQFDRVFNVLHG 78

Query: 61  --NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
               GEDG+VQ ++E   +PYT S +L SALSMDK+R+KQV  S G+       +     
Sbjct: 79  HNGGGEDGIVQGLMEAFGVPYTGSDVLGSALSMDKIRTKQVWLSLGLSTPRYARLAAGAS 138

Query: 119 D-----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
                 +   +  P ++KP   GSS+G+  +     +   +  ++   +   LL+EQ ++
Sbjct: 139 AADIHVAAQQLGLPVIVKPANEGSSVGVSRVFDQAQLEDAVTLAA--RYDGALLMEQLIE 196

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           G ELT  V+GD +L    I VPK  +Y Y  KY + ++ ++ P  +  +   ++++LA  
Sbjct: 197 GDELTVAVLGDTALPSIRI-VPKGQWYDYNAKYIAEDTQYLCP-GLEGEPEAQIRQLALD 254

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           A +A GCRG  R D + D  S +++ LE+N  PGMT  S+ P+ A   G  F EL+  ++
Sbjct: 255 AFRAAGCRGWGRVDVMRDGSSGQLYLLEVNTAPGMTSHSLVPKAARQLGIDFEELVWRVL 314

Query: 294 ED 295
           E 
Sbjct: 315 EQ 316


>gi|289624984|ref|ZP_06457938.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. aesculi str.
           NCPPB3681]
 gi|289647042|ref|ZP_06478385.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. aesculi str.
           2250]
 gi|330868716|gb|EGH03425.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. aesculi str.
           0893_23]
          Length = 319

 Score =  329 bits (843), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 112/302 (37%), Positives = 167/302 (55%), Gaps = 6/302 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+ER VSL+SG A   AL +AG     IDV       L   K D AF VLHG
Sbjct: 21  VAVLFGGKSAERAVSLNSGNAVLGALLEAGVDAFGIDVGDDFLQRLVSEKIDRAFIVLHG 80

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--M 118
             GEDG +Q +LE LEIPYT SG+LASAL+MDK+R+KQV  S G+      ++   +  +
Sbjct: 81  RGGEDGTMQGLLECLEIPYTGSGVLASALAMDKLRTKQVWQSLGLATPLHAVLENESDCI 140

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   +  P ++KP   GSS+G+  +     +      +S   +  Q+L+EQ++ G E T
Sbjct: 141 CAVTELGLPLIVKPAHEGSSIGMAKVNSVDELIAAWKAAS--TYDSQVLVEQWIQGPEFT 198

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +    L    +  P S FY Y+ KY + ++ + +P  +     +E+++LA  A +AI
Sbjct: 199 VASLRGQVLPPIGLGTPHS-FYDYDAKYLASDTQYRIPCGLGDAQEQELKQLAARACEAI 257

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           G  G +R+D + D    K + LE+N  PGMT  S+ P  A  AG  F++L+L ++ D+  
Sbjct: 258 GIAGWARTDVMQDAQ-GKFWLLEVNTVPGMTDHSLVPMAARAAGLDFQQLVLAILADSVQ 316

Query: 299 LR 300
            R
Sbjct: 317 AR 318


>gi|148652338|ref|YP_001279431.1| D-alanine--D-alanine ligase [Psychrobacter sp. PRwf-1]
 gi|190359207|sp|A5WCU0|DDL_PSYWF RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|148571422|gb|ABQ93481.1| D-alanine--D-alanine ligase [Psychrobacter sp. PRwf-1]
          Length = 332

 Score =  329 bits (843), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 97/296 (32%), Positives = 155/296 (52%), Gaps = 8/296 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AV+ GG S+ER VSL SG A   AL+  G   +  D        L +   D  FNVLHG
Sbjct: 38  VAVVFGGNSNERAVSLDSGNAVLQALQSQGIDATHFDPKDQDVTELKN--YDRVFNVLHG 95

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +L+ L +P T SG+LASA+ MDK+R+KQ+   CG+   P  ++   T   
Sbjct: 96  RGGEDGQLQGLLDWLGLPQTGSGVLASAIGMDKVRTKQLWHGCGLSTAPFAVLGADTDWQ 155

Query: 121 Q--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           Q  + +  P ++KP+  GSS+G+  +     +P     ++    GD ++ E+++ G E T
Sbjct: 156 QIVNTLGLPLIVKPVHEGSSIGMSKVNTLDELPKAYEVAA--GCGDVVMAEKWITGREFT 213

Query: 179 CGVMGDASLDVTEIAVPK-SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
             ++ D +  V  +     S+FY YE KY+  ++ + +P  +  +    +Q L+  A +A
Sbjct: 214 IVIIDDEAYPVIRLQPADISNFYDYEAKYNRNDTQYHIPCGLSAEEEAHLQALSLAAFKA 273

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +  +G  R D + D      + LEIN  PGMT  S+ P  A   G +F +L   ++
Sbjct: 274 VDAKGWGRIDAMQDEEGN-FWLLEINTVPGMTSHSLVPMAAKARGMNFEQLCWHIL 328


>gi|150392272|ref|YP_001322321.1| D-alanine--D-alanine ligase [Alkaliphilus metalliredigens QYMF]
 gi|149952134|gb|ABR50662.1| D-alanine--D-alanine ligase [Alkaliphilus metalliredigens QYMF]
          Length = 366

 Score =  329 bits (843), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 92/354 (25%), Positives = 170/354 (48%), Gaps = 60/354 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           + V+ GG S E EVSL S  +   A+    + +  + + ++    L              
Sbjct: 6   VMVIFGGQSGEHEVSLMSAASVMGAINKEKYHIIPVGIAKNGDWKLFNGSVEEIESGDWE 65

Query: 47  ---------------------------------AHLKPDLAFNVLHGNFGEDGLVQAILE 73
                                               K D+ F VLHG +GEDG +Q + E
Sbjct: 66  QSINELTEKGEDNKKFSLLPLTDGKQGIVLQNGEVKKIDVIFPVLHGPYGEDGRIQGLFE 125

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTMDS-------QHLI 124
           +++IPY   G++ASA++MDK+ +K+V+ +  +   P  ++   RF +D        +   
Sbjct: 126 MIDIPYVGCGVMASAVAMDKVITKKVLEAEKIAQTPYQVIYGRRFQLDPLKYLNDLEATF 185

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
             P  +KP   GSS+GI   K  +++ + + ++    + ++++IE +V+G E+ C V+G+
Sbjct: 186 EYPVFVKPANMGSSVGISKAKNREALKIAIKEAG--KYDNKIVIEAFVEGREIECAVLGN 243

Query: 185 ASLDVTEIA--VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            +  V   A  +P  +FY Y  KY    S +V+P  +  ++ +E+Q LA   ++ + CRG
Sbjct: 244 EAPRVALPAEIIPSHEFYDYHDKYFDGTSRYVIPPDLSEELIQEIQHLAIQTYELLDCRG 303

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +SR DF  +  + +V   E+N  PG T +S++P+M    G  + +L+  +++ A
Sbjct: 304 LSRIDFFVENETNRVLVNEVNTMPGFTKISMYPKMWEATGLPYDKLIDELIQLA 357


>gi|188575299|ref|YP_001912228.1| D-alanine--D-alanine ligase [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188519751|gb|ACD57696.1| D-alanine--D-alanine ligase [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 318

 Score =  328 bits (842), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 107/302 (35%), Positives = 163/302 (53%), Gaps = 11/302 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG SSEREVSL+SG     AL   G     +D   ++   L   + D  FNVLHG
Sbjct: 19  VAVLLGGTSSEREVSLNSGSNVLEALRARGVDAQPVDGIAALAKALVAQQFDRVFNVLHG 78

Query: 61  --NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
               GEDG+VQ ++E   +PYT S +L SALSMDK+R+KQV  S G+       +     
Sbjct: 79  HNGGGEDGIVQGLMEAFGVPYTGSDVLGSALSMDKIRTKQVWLSLGLSTPRYARLAAGAS 138

Query: 119 DSQ-----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
            +        +  P ++KP   GSS+G+  +     +   +  ++   +   LL+EQ ++
Sbjct: 139 AADIHAAAQQLGLPVIVKPANEGSSVGVSRVFDQAQLEDAVTLAA--RYDGALLMEQLIE 196

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           G ELT  V+GD +L    I VPK  +Y Y  KY + ++ ++ P  +  +   ++++LA  
Sbjct: 197 GDELTVAVLGDTALPSIRI-VPKGQWYDYNAKYIAEDTQYLCP-GLEGEPEAQIRQLALD 254

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           A +A GCRG  R D + D  S +++ LE+N  PGMT  S+ P+ A   G  F EL+  ++
Sbjct: 255 AFRAAGCRGWGRVDVMRDGSSGQLYLLEVNTAPGMTSHSLVPKAARQLGIDFEELVWRVL 314

Query: 294 ED 295
           E 
Sbjct: 315 EQ 316


>gi|298252073|ref|ZP_06975876.1| D-alanine/D-alanine ligase [Ktedonobacter racemifer DSM 44963]
 gi|297546665|gb|EFH80533.1| D-alanine/D-alanine ligase [Ktedonobacter racemifer DSM 44963]
          Length = 372

 Score =  328 bits (842), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 96/354 (27%), Positives = 165/354 (46%), Gaps = 60/354 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40
           + V+ GG S E EVSL+S  +    L+   + +  I +                    D 
Sbjct: 7   IGVIYGGRSCEHEVSLASAVSVVRYLDTEKYDIIPIVIMKDGAWLWNVEPGQLLQASSDP 66

Query: 41  SVGLVLAHLKP---------------------------DLAFNVLHGNFGEDGLVQAILE 73
            +   LA                               DL F VLHG +GEDG +Q + E
Sbjct: 67  ELAAALASAPVVSLATDTQSRQFFALQNKQPLPADGRLDLLFPVLHGPYGEDGTIQGLFE 126

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLI 124
           +  IPY   G+L SA+ MDK   K +  + G+PV  S++   F           + +  +
Sbjct: 127 MANIPYVGCGVLGSAVGMDKEIMKVLFQAAGLPVVDSLVYRHFQWKRDPEGLLNEVEQRL 186

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
           S P  +KP   GSS+G+   +  Q +      S ++ +  +++IEQ ++  E +C ++G+
Sbjct: 187 SYPCFVKPANLGSSVGVSNARNRQEM--ARAISEAFTYDRKVIIEQGLECREFSCAILGN 244

Query: 185 ASLDVTEIA--VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
               V+++   +P  +F  YE KY +     V+P+ +P +  +E++ +A  A+QA+   G
Sbjct: 245 EYPLVSQVGEILPGDEFSDYEDKYVNHTIQFVIPSTLPAETARELREMALRAYQALDLSG 304

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +SR DF  D    + +  E+N  PG T +S++P++ A +G S+ ELL  ++E A
Sbjct: 305 LSRVDFFQDKTGGQFYINEVNTLPGFTDMSLYPKLWAASGLSYPELLDRLIELA 358


>gi|58583447|ref|YP_202463.1| D-alanine--D-alanine ligase [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|58428041|gb|AAW77078.1| D-alanine-D-alanine ligase B [Xanthomonas oryzae pv. oryzae
           KACC10331]
          Length = 318

 Score =  328 bits (842), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 107/301 (35%), Positives = 163/301 (54%), Gaps = 11/301 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG SSEREVSL+SG     AL   G     +D   ++   L   + D  FNVLHG
Sbjct: 19  VAVLLGGTSSEREVSLNSGSNVLEALRARGVDAQPVDGIAALAKALVAQQFDRVFNVLHG 78

Query: 61  --NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
               GEDG+VQ ++E   +PYT S +L SALSMDK+R+KQV  S G+       +     
Sbjct: 79  HNGGGEDGIVQGLMEAFGVPYTGSDVLGSALSMDKIRTKQVWLSLGLSTPRYARLAAGAS 138

Query: 119 D-----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
                 +   +  P ++KP   GSS+G+  +     +   +  ++   +   LL+EQ ++
Sbjct: 139 AADIHVAAQQLGLPVIVKPANEGSSVGVSRVFDQAQLEDAVTLAA--RYDGALLMEQLIE 196

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           G ELT  V+GD +L    I VPK  +Y Y  KY + ++ ++ P  +  +   ++++LA  
Sbjct: 197 GDELTVAVLGDTALPSIRI-VPKGQWYDYNAKYIAEDTQYLCP-GLEGEPEAQIRQLALD 254

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           A +A GCRG  R D + D  S +++ LE+N  PGMT  S+ P+ A   G  F EL+  ++
Sbjct: 255 AFRAAGCRGWGRVDVMRDGSSGQLYLLEVNTAPGMTSHSLVPKAARQLGIDFEELVWRVL 314

Query: 294 E 294
           E
Sbjct: 315 E 315


>gi|323527428|ref|YP_004229581.1| D-alanine/D-alanine ligase [Burkholderia sp. CCGE1001]
 gi|323384430|gb|ADX56521.1| D-alanine/D-alanine ligase [Burkholderia sp. CCGE1001]
          Length = 313

 Score =  328 bits (841), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 101/296 (34%), Positives = 153/296 (51%), Gaps = 11/296 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SG+     L DAG      D        L       AFN LHG
Sbjct: 12  VAVLLGGNSAEREVSLNSGRLVLQGLRDAGVDAHPFDPAERPLAALKDEGFVRAFNALHG 71

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118
            +GE+G +Q  L+   I YT SG+L SAL +DK R+K V    G+P  P   V R     
Sbjct: 72  GYGENGQIQGALDFYGIKYTGSGVLGSALGLDKFRTKLVWQQLGIPTPPFEAVMRGDDYE 131

Query: 119 ----DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD- 173
               D    +  P  +KP   GSS+ +I +K   ++P  L+++    +   +++E+ ++ 
Sbjct: 132 ARAKDIVAKLGLPLFVKPASEGSSVAVIKVKSADALPAALVEAV--KYDRIVVVEKSIEG 189

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           G E T  + GD  L V  I VP  +FY Y  KY + ++ +++P  +       ++ LA  
Sbjct: 190 GGEYTACIAGDLDLPVIRI-VPAGEFYDYHAKYIANDTQYLIPCGLTPAEETRMKVLARR 248

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           A   +GC    R+DF+ D      ++LE+N  PGMT  S+ P+ A   G S++EL+
Sbjct: 249 AFDVLGCTDWGRADFMLDA-DGNPYFLEVNTAPGMTDHSLPPKAARAVGISYQELV 303


>gi|238754436|ref|ZP_04615791.1| D-alanine--D-alanine ligase [Yersinia ruckeri ATCC 29473]
 gi|238707265|gb|EEP99627.1| D-alanine--D-alanine ligase [Yersinia ruckeri ATCC 29473]
          Length = 289

 Score =  328 bits (841), Expect = 7e-88,   Method: Composition-based stats.
 Identities = 101/292 (34%), Positives = 154/292 (52%), Gaps = 13/292 (4%)

Query: 15  SLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILEL 74
           SL SG+A  + L +AG     ID        L     D AF  LHG  GEDG +Q +L+ 
Sbjct: 2   SLLSGQAVLTGLREAGIDAYPIDTRDFPVTQLKERGFDKAFIALHGRGGEDGTLQGVLDF 61

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLIS 125
           L++PYT SG++ASAL+MDK+RSK V  + G+PV P I ++R   ++            + 
Sbjct: 62  LQLPYTGSGVMASALTMDKLRSKLVWQASGLPVSPFIALSRQQFETLSSGDFAAGIAKLG 121

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            P ++KP + GSS+G+  +     +   L +  ++ H + +LIE+++ G E T  ++GD 
Sbjct: 122 LPLIVKPSREGSSVGMSKVNHASELNAALQE--AFRHDNDILIEKWLSGPEFTVAMLGDE 179

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
            L    I  P   FY YE KY S    +  P+ +     +++  LA  A+QA+GC G  R
Sbjct: 180 VLPSIRIQ-PTGVFYDYEAKYLSDTKQYFCPSGLGEQQEQQLAELARQAYQALGCSGWGR 238

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
            D + D      + LE+N  PGMT  S+ P  A  AG SF +L+  ++  A+
Sbjct: 239 VDVMQDG-DGGFYLLEVNTSPGMTSHSLVPMAAKQAGMSFSQLVTRILALAN 289


>gi|299065610|emb|CBJ36782.1| D-alanine-D-alanine ligase B, affects cell division [Ralstonia
           solanacearum CMR15]
          Length = 331

 Score =  328 bits (841), Expect = 7e-88,   Method: Composition-based stats.
 Identities = 100/303 (33%), Positives = 159/303 (52%), Gaps = 9/303 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V++GG S+ERE+SL SG    +AL   G      D        LA          LHG
Sbjct: 20  VGVILGGRSAEREISLLSGNGVLAALRSRGVDAHPFDPGTQPVAGLAAQGFHRVVISLHG 79

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTM 118
            FGEDG +Q +LE   IPYT SG+LASAL+MDK  +K++  +  +P    ++++      
Sbjct: 80  RFGEDGTIQGLLEQFGIPYTGSGVLASALAMDKEATKRLWQTHSLPTPDFVMLHAGADWQ 139

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                +  P ++KP + GSS+G+  +     +P    +++  +    ++ EQ++DG ELT
Sbjct: 140 AVADRLGLPLIVKPAREGSSIGLTKVTSVAELPAAYEKAARLDRD--VMAEQFIDGDELT 197

Query: 179 CGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
           C V+G+     +L +  I  P+++ Y Y+ KY + ++ +  PA IP D    VQ L   A
Sbjct: 198 CAVIGEGEHATALPLIRIVAPQAN-YDYQHKYFTDDTRYECPAPIPADAAARVQALVVQA 256

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           ++++GCRG  R+D +        F LE+N  PGMT  S+ P  A   G S+ + +L +  
Sbjct: 257 YRSLGCRGWGRADIMLRKHDGAPFLLEMNTSPGMTGHSLVPMAARAVGISYEDFVLQLAA 316

Query: 295 DAS 297
            AS
Sbjct: 317 TAS 319


>gi|17547561|ref|NP_520963.1| D-alanine--D-alanine ligase [Ralstonia solanacearum GMI1000]
 gi|39930909|sp|Q8XVI9|DDL_RALSO RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|17429865|emb|CAD16549.1| probable d-alanine--d-alanine ligase (d-alanylalanine
           synthetase)(d-ala-d-ala ligase) protein [Ralstonia
           solanacearum GMI1000]
          Length = 331

 Score =  328 bits (841), Expect = 7e-88,   Method: Composition-based stats.
 Identities = 99/303 (32%), Positives = 159/303 (52%), Gaps = 9/303 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V++GG S+ERE+SL SG    +AL   G      D        LA          LHG
Sbjct: 20  VGVILGGRSAEREISLLSGNGVLAALRSRGVDAHPFDPGTQPVAGLAAQGFHRVVISLHG 79

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTM 118
            FGEDG +Q +LE   IPYT SG+LASAL+MDK  +K++  +  +P    ++++      
Sbjct: 80  RFGEDGTIQGLLEQFGIPYTGSGVLASALAMDKEATKRLWQTHSLPTPDFVMLHAGADWQ 139

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                +  P ++KP + GSS+G+  +     +P    +++  +    ++ EQ++DG ELT
Sbjct: 140 AVADRLGLPLIVKPAREGSSIGLTKVTSVAELPAAYEKAARLDRD--VMAEQFIDGDELT 197

Query: 179 CGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
           C V+G+     +L +  I  P+++ Y Y+ KY + ++ +  PA IP +    VQ L   A
Sbjct: 198 CAVIGEGEHATALPLIRIVAPQAN-YDYQHKYFTDDTRYECPAPIPAEAAARVQALVVQA 256

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           ++++GCRG  R+D +        F LE+N  PGMT  S+ P  A   G S+ + +L +  
Sbjct: 257 YRSLGCRGWGRADIMLRKHDGAPFLLEMNTSPGMTGHSLVPMAARAVGISYEDFVLQLAA 316

Query: 295 DAS 297
            AS
Sbjct: 317 TAS 319


>gi|163846334|ref|YP_001634378.1| D-alanine--D-alanine ligase [Chloroflexus aurantiacus J-10-fl]
 gi|222524098|ref|YP_002568569.1| D-alanine/D-alanine ligase [Chloroflexus sp. Y-400-fl]
 gi|163667623|gb|ABY33989.1| D-alanine--D-alanine ligase [Chloroflexus aurantiacus J-10-fl]
 gi|222447977|gb|ACM52243.1| D-alanine/D-alanine ligase [Chloroflexus sp. Y-400-fl]
          Length = 356

 Score =  328 bits (841), Expect = 7e-88,   Method: Composition-based stats.
 Identities = 101/346 (29%), Positives = 165/346 (47%), Gaps = 52/346 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS---------VGLVLAHLKP 51
           +AV+ GG S E EVSL S  A  S L+ A +++  I + +          +  ++A   P
Sbjct: 7   VAVVFGGQSGEHEVSLVSAHAVMSNLDPARYQIEAIGIGKDGQWWHGPGALAKLMAEADP 66

Query: 52  -------------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYT 80
                                          D+ F VLHG +GEDG +Q +LEL   PY 
Sbjct: 67  ARLPASAAQVAAGPVHALGRVGAPGWELPAADVIFPVLHGPYGEDGTIQGLLELAGRPYV 126

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ--------HLISPPYVIKP 132
             G+ ASA+ MDK   K   ++ G+PV P +LV R  +  +          +  P  +KP
Sbjct: 127 GCGVAASAVGMDKGLMKAAFAAAGLPVLPWVLVRRSELADESGLCARLEAALRYPMFVKP 186

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--DVT 190
              GSS+G+  ++    +   L +++   +  +L++EQ +   E+   V+G+  +   + 
Sbjct: 187 ANLGSSVGVSKVRDRAELLAGLHEAA--RYDRRLIVEQGIPAREIEISVLGNDEVVASIP 244

Query: 191 EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
              +P  ++Y Y  KY    S  ++PA +      +VQ LA  A QAI   G++R DFL 
Sbjct: 245 GEIIPAGEWYDYHAKYIDGGSQTIVPADLSPAQITQVQELAMRAFQAIDGAGLARVDFLL 304

Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           D     ++  E+N  PG TP+S++P+M A +G S+ +LL  +V+ A
Sbjct: 305 DRDQGTLWVNEVNTMPGFTPISMYPKMWAASGLSYAQLLDRLVDLA 350


>gi|262370858|ref|ZP_06064182.1| D-alanine-D-alanine ligase B [Acinetobacter johnsonii SH046]
 gi|262314220|gb|EEY95263.1| D-alanine-D-alanine ligase B [Acinetobacter johnsonii SH046]
          Length = 309

 Score =  328 bits (841), Expect = 7e-88,   Method: Composition-based stats.
 Identities = 100/298 (33%), Positives = 158/298 (53%), Gaps = 8/298 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL SG A   AL  +G      D        L  +  D AF VLHG
Sbjct: 10  VAVLLGGKSAEREVSLDSGAAVLEALVRSGVNAEAFDPQERSVTEL--VGYDRAFIVLHG 67

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LE L IPYT +G+  SA+ MDK+++KQV     +P  P  ++++ +  +
Sbjct: 68  RGGEDGQIQGVLEWLNIPYTGTGVQGSAIGMDKVKTKQVWQGSDLPTAPYRIISQESDLA 127

Query: 121 Q--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           +    +  P +IKP+  GSS+G+  ++K + +   + +++   H   ++ E+++ G E T
Sbjct: 128 EVVANLGLPLIIKPVHEGSSVGMSKVEKAEDLAAAIAKAT--QHDAVVMAEKWITGREFT 185

Query: 179 CGVMGDASLDVTEIAVP-KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
              +    L V  +  P    FY YE KY   +  + +P  +  +  +++Q L   A QA
Sbjct: 186 ISFLDGQPLPVIRLQPPADVAFYDYEAKYQRNDVEYGIPCGLSTEEEQKLQALCLRAFQA 245

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           +G  G  R D + D      + LE+N  PGMT  S+ P+ A   GYSF  L + ++E 
Sbjct: 246 VGASGWGRIDAMQDEQGN-FWLLEVNTVPGMTSHSLVPKAANAVGYSFDALCVQILEQ 302


>gi|300112946|ref|YP_003759521.1| D-alanine/D-alanine ligase [Nitrosococcus watsonii C-113]
 gi|299538883|gb|ADJ27200.1| D-alanine/D-alanine ligase [Nitrosococcus watsonii C-113]
          Length = 316

 Score =  328 bits (841), Expect = 7e-88,   Method: Composition-based stats.
 Identities = 104/302 (34%), Positives = 159/302 (52%), Gaps = 6/302 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG S+ERE+SL SG A   AL   G +   IDV + V   L+  +   AF VLHG
Sbjct: 13  VAVLMGGYSAEREISLKSGTAVLQALLRQGIEAHGIDVGKEVLTQLSKGEFTRAFIVLHG 72

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG++Q  LE L +PYT SG+L SAL+MDK+RSKQ+     +P      +   T  +
Sbjct: 73  RGGEDGVIQGALETLNLPYTGSGVLGSALTMDKLRSKQLWRGMDLPTADFSALTEDTDPA 132

Query: 121 --QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                +  P ++KP + GSSLG++ ++   ++     +++ +     +  E+++ G E T
Sbjct: 133 VIAADLGLPLIVKPAREGSSLGMMKVESTDALQSAYREAAIF--DTAVFAERWLSGAEYT 190

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             ++ D  L +  +  P+  FY +E KY +  + +  P  +       +Q LA  A Q +
Sbjct: 191 AAILADRVLPLIRLETPRV-FYDFEAKYHANTTHYFCPCGLSERQEHVLQALALEAFQVL 249

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           G  G  R D   D  +   + LEIN  PGMT  S+ P  A  AG  F E++L ++E +  
Sbjct: 250 GASGWGRVDLRCDEKA-HPYLLEINTVPGMTDHSLVPMAAQAAGIGFDEMVLRILESSLE 308

Query: 299 LR 300
            R
Sbjct: 309 RR 310


>gi|289671016|ref|ZP_06492091.1| D-alanine--D-alanine ligase [Xanthomonas campestris pv. musacearum
           NCPPB4381]
          Length = 318

 Score =  328 bits (841), Expect = 8e-88,   Method: Composition-based stats.
 Identities = 108/302 (35%), Positives = 164/302 (54%), Gaps = 11/302 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG SSEREVSL+SG     AL   G     +D   ++   L   + D  FNVLHG
Sbjct: 19  VAVLLGGTSSEREVSLNSGSNVLEALRARGVDAQPVDGIPALAKALVAQQFDRVFNVLHG 78

Query: 61  --NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
               GEDG+VQ ++E   +PYT S +L SALSMDK+R+KQV  S G+       +     
Sbjct: 79  HNGGGEDGIVQGLMEAFGVPYTGSNVLGSALSMDKIRTKQVWLSLGLSTPRYARLAAGAS 138

Query: 119 DSQ-----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
            ++       I  P ++KP   GSS+G+  +     +   +  ++   +   LL+EQ ++
Sbjct: 139 AAEIHAAAQQIGLPVIVKPANEGSSVGVSRVFDQAQLEEAVTLAA--RYDGALLMEQLIE 196

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           G ELT  V+GD +L    I VPK  +Y Y  KY + ++ ++ P  +  D   ++++LA  
Sbjct: 197 GDELTVAVLGDTALPSIRI-VPKGQWYDYNAKYLAEDTQYLCP-GLEGDAEAQIRQLALD 254

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           A +A+GCRG  R D + D  S +++ LE+N  PGMT  S+ P+ A   G  F  L+  ++
Sbjct: 255 AFRAVGCRGWGRVDVMRDGSSGELYLLEVNTAPGMTSHSLVPKAAHQLGIDFETLVWRVL 314

Query: 294 ED 295
           E 
Sbjct: 315 EQ 316


>gi|21241551|ref|NP_641133.1| D-alanine--D-alanine ligase [Xanthomonas axonopodis pv. citri str.
           306]
 gi|39930906|sp|Q8PPA6|DDL_XANAC RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|21106902|gb|AAM35669.1| D-alanine-D-alanine ligase B [Xanthomonas axonopodis pv. citri str.
           306]
          Length = 318

 Score =  328 bits (841), Expect = 8e-88,   Method: Composition-based stats.
 Identities = 107/302 (35%), Positives = 162/302 (53%), Gaps = 11/302 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG SSEREVSL+SG     AL   G     +D   ++   L   + D  FNVLHG
Sbjct: 19  VAVLLGGTSSEREVSLNSGGNVLDALRARGVDAQPVDGIPALAKALVAQQFDRVFNVLHG 78

Query: 61  --NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN---- 114
               GEDG+VQ ++E   +PYT S +L SALSMDK+R+KQV  S G+       +     
Sbjct: 79  HNGGGEDGIVQGLMEAFGVPYTGSDVLGSALSMDKIRTKQVWLSLGLSTPRYARLAAGAS 138

Query: 115 -RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
                 +   I  P ++KP   GSS+G+  +     +   +  ++   +   LL+EQ ++
Sbjct: 139 AEDIHAAARQIGLPIIVKPANEGSSVGVSRVFDQAQLEEAVTLAA--RYDGALLMEQLIE 196

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           G ELT  V+GD +L    I VPK  +Y Y  KY + ++ ++ P  +  +   ++++LA  
Sbjct: 197 GDELTVAVLGDTALPSIRI-VPKGQWYDYNAKYIADDTQYLCP-GLEGEAEAQIRQLALD 254

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           A +A GCRG  R D + D  S +++ LE+N  PGMT  S+ P+ A   G  F  L+  ++
Sbjct: 255 AFRAAGCRGWGRVDVMRDGSSGQLYLLEVNTAPGMTSHSLVPKAARQLGIDFETLVWRVL 314

Query: 294 ED 295
           E 
Sbjct: 315 EQ 316


>gi|326564128|gb|EGE14366.1| D-alanine--D-alanine ligase [Moraxella catarrhalis 46P47B1]
          Length = 307

 Score =  328 bits (841), Expect = 8e-88,   Method: Composition-based stats.
 Identities = 104/297 (35%), Positives = 158/297 (53%), Gaps = 8/297 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AV+ GG S+EREVSL+SG A  +AL   G      D   +    L     D  FNVLHG
Sbjct: 15  VAVICGGTSAEREVSLNSGMAVLNALLSKGVDAHHFDPADTDISHLRA--YDRVFNVLHG 72

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118
            FGEDG +Q +L+   +PYT  G+LASA++MDK R + +  S G+P  P ++++  +   
Sbjct: 73  TFGEDGSLQGVLDGFNLPYTGCGVLASAIAMDKFRCRLLWQSLGLPNVPYVVLHDDSDFS 132

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
             +     P  +KP   GSS+G+ ++  +Q+  L  +      +  ++L E+ + G E  
Sbjct: 133 AVEREFGLPLFVKPAAEGSSVGVFMV--EQAGDLAKIYPKLKQYHGEILAEKAMMGGEYA 190

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             ++G+  L    I +PK  FY YE KY   ++ +  P+ +  +  +++  LA  A +AI
Sbjct: 191 IPLLGEQVLPSIRI-IPKGKFYDYEAKYLRDDTIYQCPSDLTPEQERQMGELALKAFRAI 249

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           G RG SR DF       K++ LEIN  PGMT  S+ P  A  AG  F EL L ++  
Sbjct: 250 GGRGWSRVDF-LKGHDGKLYVLEINTVPGMTDHSLVPMAAKEAGIGFDELCLQILRQ 305


>gi|296160539|ref|ZP_06843355.1| D-alanine/D-alanine ligase [Burkholderia sp. Ch1-1]
 gi|295889288|gb|EFG69090.1| D-alanine/D-alanine ligase [Burkholderia sp. Ch1-1]
          Length = 313

 Score =  328 bits (841), Expect = 8e-88,   Method: Composition-based stats.
 Identities = 102/300 (34%), Positives = 158/300 (52%), Gaps = 11/300 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SG+     L DAG      D        L       AFN LHG
Sbjct: 12  VAVLLGGNSAEREVSLNSGRLVLQGLRDAGIDAHPFDPAERPLAALKEEGFVRAFNALHG 71

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118
            +GE+G +Q  L+   I YT SG+L SAL +DK R+K V    GVP  P   V R     
Sbjct: 72  GYGENGQIQGALDFYGIRYTGSGVLGSALGLDKFRTKLVWQQLGVPTPPFETVLRGDDYE 131

Query: 119 ----DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD- 173
               D    +  P  +KP   GSS+ +I +K   ++P  L+++  ++    +++E+ ++ 
Sbjct: 132 ARAKDIVAKLGLPLFVKPASEGSSVAVIKVKSADALPAALIEAVKFDR--IVVVEKSIEG 189

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           G E T  + G+  L V  I VP  +FY Y  KY + ++ +++P  +  D    ++ LA  
Sbjct: 190 GGEYTACIAGNLDLPVIRI-VPAGEFYDYHAKYIANDTQYLIPCGLAADEEARLKVLARR 248

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           A   +GC    R+DF+ D      ++LE+N  PGMT  S+ P+ A   G S++EL++ ++
Sbjct: 249 AFDVLGCTDWGRADFMLDA-DGNPYFLEVNTAPGMTDHSLPPKAARAVGISYQELVVAVL 307


>gi|163732128|ref|ZP_02139574.1| D-alanine--D-alanine ligase [Roseobacter litoralis Och 149]
 gi|161394426|gb|EDQ18749.1| D-alanine--D-alanine ligase [Roseobacter litoralis Och 149]
          Length = 283

 Score =  327 bits (840), Expect = 8e-88,   Method: Composition-based stats.
 Identities = 128/288 (44%), Positives = 177/288 (61%), Gaps = 8/288 (2%)

Query: 15  SLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILEL 74
           SLSSG+ACA+AL D G+ V +ID  + +G  L  + PD   N LHG +GEDG VQ +LE 
Sbjct: 2   SLSSGQACAAALRDEGYDVVEIDAGQHLGARLIDVGPDAVLNCLHGRWGEDGCVQGLLEW 61

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLK 134
           + +PY+HSG+LASAL+MDK RSK+   + G+PV PS++     +   H++ PPYV+KP  
Sbjct: 62  MGVPYSHSGVLASALAMDKQRSKEAFVAAGLPVVPSVIAKAADVRIGHVMQPPYVVKPNN 121

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194
            GSS+G+ ++ +  + P  L +    +   ++++E +  G ELT  V+GD  L VT+I  
Sbjct: 122 EGSSVGVYLVHEAANGPPQLSE----DMPQEVMVEAFAPGRELTTTVVGDRPLTVTDIVT 177

Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
               +Y Y+ KY    S HV+PA IP DI+      A  AH A+GCRG+SR+DF +D   
Sbjct: 178 --DGWYDYDAKYKPGGSHHVVPADIPADIFDMCMDYALRAHHALGCRGVSRTDFRWDETK 235

Query: 255 R--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
               +  LE N QPGMT  S+ PE AA  G  F +L  WMVEDASC R
Sbjct: 236 GAAGLILLETNTQPGMTATSLSPEQAAATGMPFGKLCAWMVEDASCDR 283


>gi|257792839|ref|YP_003183445.1| D-alanine/D-alanine ligase [Eggerthella lenta DSM 2243]
 gi|257476736|gb|ACV57056.1| D-alanine/D-alanine ligase [Eggerthella lenta DSM 2243]
          Length = 307

 Score =  327 bits (840), Expect = 8e-88,   Method: Composition-based stats.
 Identities = 117/304 (38%), Positives = 175/304 (57%), Gaps = 12/304 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-DRSVGLVLAHLKPDLAFNVLH 59
           +A+L GG S EREVSL+S +    ALE+AG+ V+Q+D  D+     L     D+AF  LH
Sbjct: 6   VALLAGGKSGEREVSLASAEGAREALEEAGYTVTQLDPADKEDLKRLIDGPFDVAFLCLH 65

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT-- 117
           G +GEDG VQ +LE + +PY  SG+ +SAL+MDK++SK      G+   PS+ + +    
Sbjct: 66  GKYGEDGTVQGLLETIGLPYIGSGVWSSALAMDKVKSKLYYEQAGILTPPSVPLQKGDSY 125

Query: 118 --MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175
                   +    V+KP   GS+LG+ +++   +I   +    +++   ++L+E+Y+ G 
Sbjct: 126 DVDSIVEKLGTHCVVKPGTEGSALGVFIVEGAAAIGEAI--EKAFDIDSEVLVERYIKGK 183

Query: 176 ELTCGVMGD---ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
           ELT  V+GD    +L + EI VPKSDFY +E KY+   S H+ PA +  +  + VQ LA 
Sbjct: 184 ELTVAVIGDAEVEALPIIEI-VPKSDFYDFESKYAPGGSQHLCPAPLSDETTRMVQELAV 242

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
            AH+A+ C G+SRSDF+        + LE N  PGMT  S+ P+ A  AG SF EL   +
Sbjct: 243 RAHRALSCEGVSRSDFIL-EEDGSCWTLETNTIPGMTGTSLLPDAARAAGISFPELCTRL 301

Query: 293 VEDA 296
           +  A
Sbjct: 302 IGYA 305


>gi|326564830|gb|EGE15038.1| D-alanine--D-alanine ligase [Moraxella catarrhalis 12P80B1]
 gi|326566495|gb|EGE16642.1| D-alanine--D-alanine ligase [Moraxella catarrhalis 103P14B1]
 gi|326571235|gb|EGE21258.1| D-alanine--D-alanine ligase [Moraxella catarrhalis BC8]
 gi|326577220|gb|EGE27113.1| D-alanine--D-alanine ligase [Moraxella catarrhalis 101P30B1]
          Length = 307

 Score =  327 bits (840), Expect = 9e-88,   Method: Composition-based stats.
 Identities = 104/297 (35%), Positives = 158/297 (53%), Gaps = 8/297 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AV+ GG S+EREVSL+SG A  +AL   G      D   +    L     D  FNVLHG
Sbjct: 15  VAVICGGTSTEREVSLNSGMAVLNALLSKGVDAHHFDPADTDISHLRA--YDRVFNVLHG 72

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118
            FGEDG +Q +L+   +PYT  G+LASA++MDK R + +  S G+P  P ++++  +   
Sbjct: 73  TFGEDGSLQGVLDGFNLPYTGCGVLASAIAMDKFRCRLLWQSLGLPNVPYVVLHDDSDFS 132

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
             +     P  +KP   GSS+G+ ++  +Q+  L  +      +  ++L E+ + G E  
Sbjct: 133 AVEREFGLPLFVKPAAEGSSVGVFMV--EQAGDLAKIYPKLKQYHGEILAEKAMMGGEYA 190

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             ++G+  L    I +PK  FY YE KY   ++ +  P+ +  +  +++  LA  A +AI
Sbjct: 191 IPLLGEQVLPSIRI-IPKGKFYDYEAKYLRDDTIYQCPSDLTPEQERQMGELALKAFRAI 249

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           G RG SR DF       K++ LEIN  PGMT  S+ P  A  AG  F EL L ++  
Sbjct: 250 GGRGWSRVDF-LKGHDGKLYVLEINTVPGMTDHSLVPMAAKEAGIGFDELCLQILRQ 305


>gi|323706263|ref|ZP_08117830.1| D-alanine/D-alanine ligase [Thermoanaerobacterium xylanolyticum
           LX-11]
 gi|323534427|gb|EGB24211.1| D-alanine/D-alanine ligase [Thermoanaerobacterium xylanolyticum
           LX-11]
          Length = 362

 Score =  327 bits (840), Expect = 9e-88,   Method: Composition-based stats.
 Identities = 96/348 (27%), Positives = 164/348 (47%), Gaps = 54/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           +AVL GG S E EVS  S  +  + ++   ++V  + + +     L              
Sbjct: 6   VAVLFGGQSGEHEVSRVSATSIINNIDREKYEVYMVGITKRGQWYLYSGDVDKIATGEWE 65

Query: 47  -------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81
                                         D+ F VLHG  GEDG VQ ++ELLE+PY  
Sbjct: 66  KEAVPALIGPSTMYKGIIAFKDKSYEFYPIDVVFPVLHGPNGEDGTVQGLMELLEMPYVG 125

Query: 82  SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-----------QHLISPPYVI 130
             +L+S+L MDK+ SK++    G+P     +V R  ++               I  P  +
Sbjct: 126 PNVLSSSLCMDKVFSKRIFLESGIPTPKFTVVYRKNLNDVDKHEKIRSEISEKIGYPCFV 185

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190
           KP   GSS+GI  +  +  +   L  ++   +  ++++E+ +D  E+ C V+G+ + + +
Sbjct: 186 KPANMGSSVGISKVHNEGELIDALKIAA--KYDRKIIVEEGIDAREIECSVLGNDNPEAS 243

Query: 191 --EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                VP  +FY Y+ KY    S   +PA IP    +E++ LA  A+ A+  RG++R DF
Sbjct: 244 VAGEIVPAHEFYDYDAKYFDEASKLFIPAPIPDAKMEEIRELAIKAYTALDVRGMARVDF 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           L D  + KV+  E+N  PG T +S++P++   +G  + EL+  +++ A
Sbjct: 304 LMDKNTGKVYLNELNTIPGFTQISMYPKLWEASGKPYSELIDELIQLA 351


>gi|254426888|ref|ZP_05040595.1| D-ala D-ala ligase N-terminal domain protein, putative [Alcanivorax
           sp. DG881]
 gi|196193057|gb|EDX88016.1| D-ala D-ala ligase N-terminal domain protein, putative [Alcanivorax
           sp. DG881]
          Length = 307

 Score =  327 bits (840), Expect = 9e-88,   Method: Composition-based stats.
 Identities = 104/296 (35%), Positives = 156/296 (52%), Gaps = 10/296 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+ER VSL SG A    L + G     +D        L     D AF  LHG
Sbjct: 16  VAVLAGGKSAERPVSLKSGAAVHQGLRNLGLIAELVDPADKSVETLK--GFDAAFIALHG 73

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG++Q +LE LEIPYT SG++ASA+ MDK+R+KQ+    G+P     +  R   D 
Sbjct: 74  RGGEDGVIQGVLEHLEIPYTGSGVMASAIGMDKVRTKQLWKGAGLPTPAFYVSGRDEAD- 132

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P ++KP   GSS+G+      + +   L+ +  ++    +L+E +V+G E T  
Sbjct: 133 ---LGFPVIVKPAHEGSSIGMAKADNAEELAEALVAAEKFDQD--VLVEAWVNGPEYTVA 187

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V+GD +L    +  P + FY +E KY S ++ ++ PA +     + +++LA  A +  GC
Sbjct: 188 VLGDEALPAIRLQTPHA-FYDFEAKYQSDSTEYLCPAGLDDADEQALRQLALTAFRVAGC 246

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           RG  R D + D    +   LE+N  PGMT  S+ P  A   G  F  L+  ++ DA
Sbjct: 247 RGWGRVDVMRDAQ-GQWQLLEVNTVPGMTDHSLVPMAAKATGRDFDVLVGEILLDA 301


>gi|289677706|ref|ZP_06498596.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. syringae FF5]
          Length = 307

 Score =  327 bits (840), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 111/291 (38%), Positives = 163/291 (56%), Gaps = 6/291 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+ER VSL+SGKA  SAL +AG     IDV       L   K D AF VLHG
Sbjct: 21  VAVLFGGKSAERAVSLNSGKAVLSALLEAGVDAFGIDVGDDFLQRLVSEKIDRAFIVLHG 80

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--M 118
             GEDG +Q +LE LEIPYT SG+LASAL+MDK+R+KQV  S G+      ++   +  +
Sbjct: 81  RGGEDGTMQGLLECLEIPYTGSGVLASALAMDKLRTKQVWQSLGLATPLHAVLENESDCI 140

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   +  P ++KP   GSS+G+  +     +      +S   +  Q+L+EQ++ G E T
Sbjct: 141 CAATELGLPLIVKPAHEGSSIGMAKVNSVDELIAAWKAAS--TYDSQVLVEQWIQGPEFT 198

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +    L    +  P S FY Y+ KY + ++ + +P  +     +E+++LA  A +AI
Sbjct: 199 VASLRGQVLPPIGLGTPHS-FYDYDAKYLASDTQYRIPCGLGDAQEQELKQLAARACEAI 257

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           G  G +R+D + D    K + LE+N  PGMT  S+ P  A  AG  F++L+
Sbjct: 258 GIAGWARTDVMQDAQ-GKFWLLEVNTVPGMTDHSLVPMAARAAGLDFQQLV 307


>gi|327475203|gb|AEA77196.1| D-alanyl-alanine synthetase A [Bacillus sp. 15.4]
          Length = 358

 Score =  327 bits (840), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 97/343 (28%), Positives = 164/343 (47%), Gaps = 50/343 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           + +L GG S+E +VSL + KA   AL++  + +  I +      V               
Sbjct: 5   ICLLYGGKSAEHQVSLQTAKAVIGALDNDKYDIHPIYISEEGQWVKGPQLQGPVENAKEL 64

Query: 47  ----------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84
                                      D+   +LHG  GEDG VQ +LELL +PY  +G+
Sbjct: 65  AFTEGEAIAPNALSTTLSPEESEGGTFDVILPLLHGPNGEDGTVQGMLELLNLPYVGNGV 124

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPLKG 135
           LASA  MDK+  K + +  G+P    +   + T          D +  +  P  +KP   
Sbjct: 125 LASAAGMDKVIMKNLYAQAGIPQVNYVWYLKKTWESDPEAAYLDVEKELGYPCFVKPANL 184

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD--VTEIA 193
           GSS+GI      + + L   ++  ++   +++IEQ V   E+  GV+G+   +  V    
Sbjct: 185 GSSVGISKASSREELILAFKEAFQFDR--KIIIEQGVKAREIELGVLGNDEPECSVPGEI 242

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
           +PK DFY Y+ KY   ++  ++PA+IP  IY++++R+A  + +A+ C G+ R+DF     
Sbjct: 243 LPKKDFYDYKAKYEDGDTALIIPAEIPEHIYEDMKRIAVDSFKALDCSGLVRADFFLTE- 301

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              ++  E+N  PG TP S+FP +  ++G  + EL+  +V+ A
Sbjct: 302 DGGIYMNEVNTMPGFTPFSMFPLLWKHSGVEYPELIERLVQLA 344


>gi|121998867|ref|YP_001003654.1| D-alanine--D-alanine ligase [Halorhodospira halophila SL1]
 gi|190359139|sp|A1WYU0|DDL_HALHL RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|121590272|gb|ABM62852.1| D-alanine--D-alanine ligase [Halorhodospira halophila SL1]
          Length = 304

 Score =  327 bits (840), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 102/296 (34%), Positives = 155/296 (52%), Gaps = 6/296 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG S+ER++SL SG A  +AL+  G+     D        L     D+ F  LHG
Sbjct: 13  VAVLMGGTSAERDISLRSGGAILAALQRCGYDAEAYDPRDRALEGLR--GYDVVFIALHG 70

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG VQ +L+LL IPYT SG+L SAL MDK R K++    G+P     L+       
Sbjct: 71  RGGEDGTVQGLLDLLGIPYTGSGVLGSALGMDKWRCKRLWQGSGLPTPAGQLLTGDRPVL 130

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P ++KP + GSSLG+  ++  + +      +++  + D +L E +V+G E T  
Sbjct: 131 DEGVGYPVIVKPAREGSSLGMSRVEGPEELAEAYRVAAA--YDDTVLAEAWVEGEEYTVA 188

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           ++GD +L    +  P + F+ Y  KY + ++ H  P+ +  +   E+  L   A  A G 
Sbjct: 189 LLGDQALPSIRLETPHA-FFDYAAKYQAEDTGHHCPSGLGPEEEAELGALCREAFIASGG 247

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            G  R D + D    + + LE+N  PGMT  S+ P  AA AG  F EL+  ++ +A
Sbjct: 248 NGWGRVDVMRDT-GGRWWLLEVNTIPGMTDHSLVPIAAAQAGIGFDELVARILGEA 302


>gi|262377184|ref|ZP_06070409.1| D-alanine-D-alanine ligase B [Acinetobacter lwoffii SH145]
 gi|262307922|gb|EEY89060.1| D-alanine-D-alanine ligase B [Acinetobacter lwoffii SH145]
          Length = 309

 Score =  327 bits (840), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 102/298 (34%), Positives = 161/298 (54%), Gaps = 8/298 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL SG A   AL  +G      D        L  +  D AF VLHG
Sbjct: 10  VAVLLGGKSAEREVSLDSGTAVLEALVRSGVNAEAFDPQERSVTEL--VNYDRAFIVLHG 67

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q  LE L +PYT +G+  SA+ MDK+++KQV     +P  P  +V + +  +
Sbjct: 68  RGGEDGQIQGALEWLNVPYTGTGVQGSAIGMDKVKTKQVWQGSELPTAPYRIVTKDSDAT 127

Query: 121 Q--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           +  + +  P +IKP+  GSS+G+  ++K +     + +++   H   ++ E+++ G E T
Sbjct: 128 EIVNALGLPLIIKPVHEGSSIGMSKVEKIEDFAEAIAKAT--EHDAVVMAEKWITGREYT 185

Query: 179 CGVMGDASLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
             V+   +L V  +  P+   FY YE KY   +  + +P  +     ++++ L+  A QA
Sbjct: 186 IVVLNGQALPVIRLEPPQDVAFYDYEAKYQRNDVQYGIPCGLSEAEEQQLKALSLRAFQA 245

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           +G  G  R D + D      + LE+N  PGMT  S+ P+ AA  GYSF EL + ++E 
Sbjct: 246 VGASGWGRIDAMQDEQGN-FWLLEVNTVPGMTSHSLVPKAAAAVGYSFDELCVAILEQ 302


>gi|257060565|ref|YP_003138453.1| D-alanyl-alanine synthetase A [Cyanothece sp. PCC 8802]
 gi|256590731|gb|ACV01618.1| D-alanine/D-alanine ligase [Cyanothece sp. PCC 8802]
          Length = 351

 Score =  327 bits (840), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 100/347 (28%), Positives = 169/347 (48%), Gaps = 49/347 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALED----AGFKVSQIDVDRSVGL--------VLAH 48
           + +L GG S E EVSL+S +A A+AL+       + +  I + ++           VL  
Sbjct: 6   VGLLFGGRSGEHEVSLNSARAIATALQSGENPQKYDIIPIYIQKNGVWQAGETAQQVLND 65

Query: 49  LKP---------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87
            KP                     D+ F +LHG  GEDG +Q +L L++ P+  SG+L S
Sbjct: 66  AKPLPCEDATSQQLWTFPPQVSEVDVWFPILHGPNGEDGTLQGLLTLMQTPFVGSGVLGS 125

Query: 88  ALSMDKMRSKQVVSSCGVPVCPSILVNRFTM------------DSQHLISPPYVIKPLKG 135
           A+ MDK+  K   +  G+P    I V+R  +            + +  +  P  +KP   
Sbjct: 126 AVGMDKIAMKMAFAQAGLPQVKYIAVDRAQIWSNPCVFPKLCDEIEQGLGYPCFVKPANL 185

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195
           GSS+GI  ++    +   L  ++S++   +++IE  V   E+ C V+G+ +   + I   
Sbjct: 186 GSSVGIAKVRSRSELEKALDSAASYDR--RIVIETGVKAREVECAVLGNENPKASVIGEI 243

Query: 196 --KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
              SDFY YE KY+   +   +PA++P  I  ++Q +A  A +A+   G++R DF +   
Sbjct: 244 TYNSDFYDYEAKYTDGMAQMQIPAQLPDAIVTQIQDMAIQAFKAVDGAGLARVDFFYVED 303

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           S++VF  EIN  PG T  S++P++    G  F EL+  +++ A   +
Sbjct: 304 SQEVFINEINTLPGFTAFSMYPQLWKETGVPFAELVDQLIQLALERK 350


>gi|91785291|ref|YP_560497.1| D-alanine--D-alanine ligase [Burkholderia xenovorans LB400]
 gi|123168042|sp|Q13TZ4|DDL_BURXL RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|91689245|gb|ABE32445.1| D-alanine--D-alanine ligase [Burkholderia xenovorans LB400]
          Length = 313

 Score =  327 bits (840), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 100/300 (33%), Positives = 158/300 (52%), Gaps = 11/300 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SG+     L DAG      D        L       AFN LHG
Sbjct: 12  VAVLLGGNSAEREVSLNSGRLVLQGLRDAGIDAHPFDPAERPLAALKEEGFVRAFNALHG 71

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118
            +GE+G +Q  L+   I YT SG+L SAL +DK R+K V    G+P  P   V R     
Sbjct: 72  GYGENGQIQGALDFYGIRYTGSGVLGSALGLDKFRTKLVWQQLGIPTPPFEAVLRGDDYE 131

Query: 119 ----DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD- 173
               +    +  P  +KP   GSS+ +I +K   ++P  L+++  ++    +++E+ ++ 
Sbjct: 132 ARAKEIVAKLGLPLFVKPASEGSSVAVIKVKSADALPAALIEAVKFDR--IVVVEKSIEG 189

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           G E T  + G+  L V  I VP  +FY Y  KY + ++ +++P  +  D    ++ LA  
Sbjct: 190 GGEYTACIAGNLDLPVIRI-VPAGEFYDYHAKYIANDTQYLIPCGLTADEEARLKVLARR 248

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           A   +GC    R+DF+ D      ++LE+N  PGMT  S+ P+ A   G S++EL++ ++
Sbjct: 249 AFDVLGCTDWGRADFMLDA-DGNPYFLEVNTAPGMTDHSLPPKAARAVGISYQELVVAVL 307


>gi|110598234|ref|ZP_01386510.1| D-alanine--D-alanine ligase [Chlorobium ferrooxidans DSM 13031]
 gi|110340149|gb|EAT58648.1| D-alanine--D-alanine ligase [Chlorobium ferrooxidans DSM 13031]
          Length = 369

 Score =  327 bits (839), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 106/351 (30%), Positives = 170/351 (48%), Gaps = 57/351 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           +A++ GG S+E E+S+ S K+ A+ +    ++V  I +      +L  +           
Sbjct: 6   VAIIFGGRSAEHEISIISAKSIAANINTDRYRVIPIYITHDGEWLLDGIARDILNFDLAT 65

Query: 50  ---------------------------------KPDLAFNVLHGNFGEDGLVQAILELLE 76
                                              D+AF VLHG++GEDG +Q  L+   
Sbjct: 66  LLRSSSLDAAGKTLRRMTKESGQHPFDRNFTATGIDVAFLVLHGSYGEDGRIQGFLDTCA 125

Query: 77  IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---------NRFTMDSQHLISPP 127
           IPYT  G+LASA++MDK  +K  V+  G+ V P I +         + F          P
Sbjct: 126 IPYTGCGVLASAVTMDKALTKLCVADAGIAVAPGITLLSSDYLADPDSFHTRIDREFEYP 185

Query: 128 YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL 187
             IKP   GSS+GI  +     +PL L  + +     ++L+E+ + G E+   V+G+A  
Sbjct: 186 LFIKPANLGSSVGISKVHNPAELPLALKTACTL--DTKILVEKAIKGREIEVAVLGNAQP 243

Query: 188 DVTEIAV--PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
           +V+      P SDFY YE KY   ++   +PA+IP  + ++V+ LA  A +A+GCRG+SR
Sbjct: 244 EVSVCGEIEPGSDFYDYEDKYIHNSAKTFIPARIPSVLQEKVRELALRAFKALGCRGMSR 303

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            DF  D  S+ +   E+N  PG T +S++P++   +G  F EL   ++E A
Sbjct: 304 IDFFVDEESKSIILNEVNTIPGFTDISMYPKLMEASGIPFPELATRLLELA 354


>gi|326561547|gb|EGE11890.1| D-alanine--D-alanine ligase [Moraxella catarrhalis 7169]
 gi|326570679|gb|EGE20713.1| D-alanine--D-alanine ligase [Moraxella catarrhalis BC1]
 gi|326573082|gb|EGE23055.1| D-alanine--D-alanine ligase [Moraxella catarrhalis CO72]
 gi|326577785|gb|EGE27657.1| D-alanine--D-alanine ligase [Moraxella catarrhalis O35E]
          Length = 333

 Score =  327 bits (839), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 104/297 (35%), Positives = 158/297 (53%), Gaps = 8/297 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AV+ GG S+EREVSL+SG A  +AL   G      D   +    L     D  FNVLHG
Sbjct: 41  VAVVCGGTSTEREVSLNSGMAVLNALLSKGVDAHHFDPADTDISHLRA--YDRVFNVLHG 98

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118
            FGEDG +Q +L+   +PYT  G+LASA++MDK R + +  S G+P  P ++++  +   
Sbjct: 99  TFGEDGSLQGVLDGFNLPYTGCGVLASAIAMDKFRCRLLWQSLGLPNVPYVVLHDDSDFS 158

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
             +     P  +KP   GSS+G+ ++  +Q+  L  +      +  ++L E+ + G E  
Sbjct: 159 AVEREFGLPLFVKPAAEGSSVGVFMV--EQAGDLAKIYPKLKQYHGEILAEKAMMGGEYA 216

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             ++G+  L    I +PK  FY YE KY   ++ +  P+ +  +  +++  LA  A +AI
Sbjct: 217 IPLLGEQVLPSIRI-IPKGKFYDYEAKYLRDDTIYQCPSDLTPEQERQMGELALKAFRAI 275

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           G RG SR DF       K++ LEIN  PGMT  S+ P  A  AG  F EL L ++  
Sbjct: 276 GGRGWSRVDF-LKGHDGKLYVLEINTVPGMTDHSLVPMAAKEAGIGFDELCLQILRQ 331


>gi|240949725|ref|ZP_04754057.1| D-alanine--D-alanine ligase [Actinobacillus minor NM305]
 gi|240295757|gb|EER46444.1| D-alanine--D-alanine ligase [Actinobacillus minor NM305]
          Length = 303

 Score =  327 bits (839), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 107/301 (35%), Positives = 166/301 (55%), Gaps = 9/301 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG+S+EREVSL+SGK+   AL+  G+ V  ID+       L        FN+LHG
Sbjct: 8   IAVLFGGVSAEREVSLNSGKSVFEALQSLGYNVEAIDIKEFPIEKLKEKGIQRVFNILHG 67

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118
             GE+G++Q  LE L IPYT  G++ASA+++DK R+K + ++ G+P     +V R     
Sbjct: 68  GIGENGVLQGALEQLGIPYTGCGVMASAITLDKFRTKLLWNAVGLPTAAMEVVRRGQAVN 127

Query: 119 --DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
             +    +  P  +KP   GSS+G+  +K  + +   +    +  +   +L+E+ + G E
Sbjct: 128 SDEIIAKLGLPLFVKPASEGSSVGVSKVKTAEQLLPAI--EEALKYDSIVLVEENLAGAE 185

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
            +  V+    L   +I +P  +FY Y  KY S N+ +V+PA +  D   EV +L   A+ 
Sbjct: 186 YSVPVLDGEVLPAVQI-IPDGEFYDYHAKYISDNTQYVVPA-LNADRQAEVAKLVKQAYD 243

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            +GCRG SR D + D        +E+N  PGMT  SIFP+ AA  GYSF  L+  ++E +
Sbjct: 244 VVGCRGWSRIDVMEDGEGN-FRLVEVNTCPGMTSHSIFPKSAATVGYSFERLVERVLELS 302

Query: 297 S 297
           +
Sbjct: 303 A 303


>gi|226311631|ref|YP_002771525.1| D-alanine--D-alanine ligase [Brevibacillus brevis NBRC 100599]
 gi|226094579|dbj|BAH43021.1| D-alanine--D-alanine ligase [Brevibacillus brevis NBRC 100599]
          Length = 375

 Score =  327 bits (839), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 99/352 (28%), Positives = 166/352 (47%), Gaps = 58/352 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-----------------DRSVG 43
           + ++ GG SSE EVSL +  +   A++   ++V+ + V                 D+   
Sbjct: 8   LGIIYGGKSSEHEVSLRTAMSIMQAVDANKYEVTPVYVQLDGSWVTGETLAGQLPDKIEA 67

Query: 44  LVLAHLKP----------------------------DLAFNVLHGNFGEDGLVQAILELL 75
           L L+   P                            D+ F V+HG FGEDG +Q +LEL 
Sbjct: 68  LRLSAKTPVSNEATETGQELAVTSKSGSLFAMNEQMDVVFPVVHGPFGEDGTIQGLLELA 127

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISP 126
            IPY  +G++ASA+ MDK   K V +  G+P    + + R   +          +  +  
Sbjct: 128 NIPYVGTGVMASAVGMDKWMMKTVFAQAGLPQVKYVGLLRSQWEKGQDDVMDRIERELGY 187

Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186
           P  +KP   GSS+GI   K  + +   L  ++ ++   +L++E++V   EL  GV+G+  
Sbjct: 188 PCFVKPANMGSSVGINKAKNREELKHALDVAAKFDR--RLIVEEFVQVRELEIGVLGNEE 245

Query: 187 L--DVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244
           L   V    +   +FY YE KY    +   +PA +P  + +++  +A  A QA+   G+S
Sbjct: 246 LMTSVVGEVIAAKEFYDYEAKYKGAGTELSIPAIVPEHVSEQIAEIAKQAFQALDGSGLS 305

Query: 245 RSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           R DF +D  + K++  E+N  PG TP S++P +   AG  + EL+  +V+ A
Sbjct: 306 RVDFFWDEKNDKLYINEVNTMPGFTPFSMYPMLFQAAGVGYSELIDRLVQLA 357


>gi|67922156|ref|ZP_00515671.1| D-alanine--D-alanine ligase [Crocosphaera watsonii WH 8501]
 gi|67856056|gb|EAM51300.1| D-alanine--D-alanine ligase [Crocosphaera watsonii WH 8501]
          Length = 349

 Score =  327 bits (839), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 93/343 (27%), Positives = 163/343 (47%), Gaps = 49/343 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALE----DAGFKVSQIDVDRSVGLVLAH-------- 48
           + +L GG S E EVS++S +A A AL+    D  + V  + + ++   +           
Sbjct: 6   IGLLFGGRSGEHEVSINSAQAIAQALQTGENDHKYDVIPVYIQKNGVWIAGETADEVLES 65

Query: 49  ---------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87
                                 + ++ F VLHG  GEDG +Q +L L+++P+  SG+L S
Sbjct: 66  KTPLSPEDTNPYQLWQFPPELQEVEVWFPVLHGPNGEDGTIQGLLTLMQVPFVGSGVLGS 125

Query: 88  ALSMDKMRSKQVVSSCGVPVCPSILVNRFTM------------DSQHLISPPYVIKPLKG 135
           A+ MDK+  K   +  G+P      V R  +            D +  +  P  +KP   
Sbjct: 126 AVGMDKIAMKMAFAQAGLPQVKYKAVERSQIWSNPCIFPKLCDDIEAGLGYPCFVKPANL 185

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195
           GSS+GI   +    +   L  ++S++   +++IE  V   EL C V+G+ +   + +   
Sbjct: 186 GSSVGIAKARSHSELEAALDSAASYDR--RIVIEAGVTARELECAVLGNDNPKASVVGEI 243

Query: 196 --KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
              SDFY YE KY+   S   +PA +P  + K++Q +A  A + +   G++R DF +   
Sbjct: 244 TFDSDFYDYETKYTEGRSQIHIPASLPEKVIKQIQEMAIQAFKTVDASGLARVDFFYVEE 303

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           ++ ++  EIN  PG T  S++P++    G SF +L+  +++ A
Sbjct: 304 TQAIYLNEINTLPGFTKFSMYPQLWQATGISFEQLVDKLIQLA 346


>gi|21230201|ref|NP_636118.1| D-alanine--D-alanine ligase [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66769809|ref|YP_244571.1| D-alanine--D-alanine ligase [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|188993024|ref|YP_001905034.1| D-alanine--D-alanine ligase [Xanthomonas campestris pv. campestris
           str. B100]
 gi|39931166|sp|Q8PCJ8|DDLB_XANCP RecName: Full=D-alanine--D-alanine ligase B; AltName:
           Full=D-Ala-D-Ala ligase B; AltName: Full=D-alanylalanine
           synthetase B
 gi|21111739|gb|AAM40042.1| D-alanine-D-alanine ligase B [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66575141|gb|AAY50551.1| D-alanine-D-alanine ligase B [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|167734784|emb|CAP52994.1| D-alanine-D-alanine ligase B [Xanthomonas campestris pv.
           campestris]
          Length = 318

 Score =  327 bits (839), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 109/302 (36%), Positives = 160/302 (52%), Gaps = 11/302 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG SSEREVSL+SG     AL   G     +D   ++   L   + D  FNVLHG
Sbjct: 19  VAVLLGGTSSEREVSLNSGSNVLDALRARGVDAQPVDGIPALAQALVAQRFDRVFNVLHG 78

Query: 61  --NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
               GEDG+VQ ++E   +PYT S +L SALSMDK+R+KQV  S G+       +     
Sbjct: 79  HNGGGEDGIVQGLMEAFGVPYTGSNVLGSALSMDKIRTKQVWLSLGLSTPRYARLAAGAS 138

Query: 119 DSQ-----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
             Q       I  P ++KP   GSS+G+  +       LD   + +  +   LL+EQ ++
Sbjct: 139 AQQIHAAAEQIGLPVIVKPANEGSSVGVSRVF--DQAQLDEAVTLAARYDGALLMEQLIE 196

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           G ELT  V+GD +L    I VPK  +Y Y  KY + ++ ++ P  +  D   ++ +LA  
Sbjct: 197 GDELTVAVLGDVALPSIRI-VPKGQWYDYNAKYIAEDTQYLCP-GLDGDAEAQIGQLALD 254

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           A +A GC G  R D + D  + +++ LE+N  PGMT  S+ P+ A   G  F  L+  ++
Sbjct: 255 AFRAAGCSGWGRVDVMRDGSTGQLYLLEVNTAPGMTSHSLVPKAARQLGIDFEALVWRVL 314

Query: 294 ED 295
           E 
Sbjct: 315 EQ 316


>gi|326568017|gb|EGE18109.1| D-alanine--D-alanine ligase [Moraxella catarrhalis BC7]
          Length = 307

 Score =  327 bits (839), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 104/297 (35%), Positives = 158/297 (53%), Gaps = 8/297 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AV+ GG S+EREVSL+SG A  +AL   G      D   +    L     D  FNVLHG
Sbjct: 15  VAVVCGGTSTEREVSLNSGMAVLNALLSKGVDAHHFDPADTDISHLRA--YDRVFNVLHG 72

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118
            FGEDG +Q +L+   +PYT  G+LASA++MDK R + +  S G+P  P ++++  +   
Sbjct: 73  TFGEDGSLQGVLDGFNLPYTGCGVLASAIAMDKFRCRLLWQSLGLPNVPYVVLHDDSDFS 132

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
             +     P  +KP   GSS+G+ ++  +Q+  L  +      +  ++L E+ + G E  
Sbjct: 133 AVEREFGLPLFVKPAAEGSSVGVFMV--EQAGDLAKIYPKLKQYHGEILAEKAMMGGEYA 190

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             ++G+  L    I +PK  FY YE KY   ++ +  P+ +  +  +++  LA  A +AI
Sbjct: 191 IPLLGEQVLPSIRI-IPKGKFYDYEAKYLRDDTIYQCPSDLTPEQERQMGELALKAFRAI 249

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           G RG SR DF       K++ LEIN  PGMT  S+ P  A  AG  F EL L ++  
Sbjct: 250 GGRGWSRVDF-LKGHDGKLYVLEINTVPGMTDHSLVPMAAKEAGIGFDELCLQILRQ 305


>gi|262373759|ref|ZP_06067037.1| D-alanine-D-alanine ligase B [Acinetobacter junii SH205]
 gi|262311512|gb|EEY92598.1| D-alanine-D-alanine ligase B [Acinetobacter junii SH205]
          Length = 308

 Score =  327 bits (839), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 101/298 (33%), Positives = 152/298 (51%), Gaps = 8/298 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+ER VSL SG+A   AL  +G +    D        L     D AF VLHG
Sbjct: 10  VAVLFGGKSAERAVSLDSGQAVLEALLRSGVQAEAFDPQEKSVTELVA--YDRAFIVLHG 67

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118
             GEDG +Q +LE L IPYT +G+  SA+ MDK+++KQ+     +P  P  ++ + +   
Sbjct: 68  RGGEDGQIQGVLEWLNIPYTGTGVQGSAIGMDKVKTKQIWQGSDLPTAPYRIITKDSDLN 127

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                +  P +IKP+  GSS+G+  ++K +     + +++   H   ++ E+++ G E T
Sbjct: 128 SVIADLGLPVIIKPVHEGSSVGMSKVEKAEDFAAAIEKAT--QHDAVVMAEKWITGREFT 185

Query: 179 CGVMGDASLDVTEIAVP-KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
              +    L V  +  P    FY YE KY   +  + +P  +     K +Q L   A QA
Sbjct: 186 ISFLNGQPLPVIRLQPPADVAFYDYEAKYQRNDVQYGIPCGLSETEEKSLQALCLRAFQA 245

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           +G  G  R D + D      + LE+N  PGMT  S+ P+ A   GYSF EL L ++E 
Sbjct: 246 VGAEGWGRIDAMQDEQGN-FWLLEVNTVPGMTSHSLVPKAAQAVGYSFDELCLAILEQ 302


>gi|296112511|ref|YP_003626449.1| D-alanine-D-alanine ligase B DdlB [Moraxella catarrhalis RH4]
 gi|295920205|gb|ADG60556.1| D-alanine-D-alanine ligase B DdlB [Moraxella catarrhalis RH4]
          Length = 307

 Score =  327 bits (839), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 104/297 (35%), Positives = 158/297 (53%), Gaps = 8/297 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AV+ GG S+EREVSL+SG A  +AL   G      D   +    L     D  FNVLHG
Sbjct: 15  VAVICGGKSTEREVSLNSGMAVLNALLSKGVDAHHFDPADTDISHLRA--YDRVFNVLHG 72

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118
            FGEDG +Q +L+   +PYT  G+LASA++MDK R + +  S G+P  P ++++  +   
Sbjct: 73  TFGEDGSLQGVLDGFNLPYTGCGVLASAIAMDKFRCRLLWQSLGLPNVPYVVLHDDSDFS 132

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
             +     P  +KP   GSS+G+ ++  +Q+  L  +      +  ++L E+ + G E  
Sbjct: 133 AVEREFGLPLFVKPAAEGSSVGVFMV--EQAGDLAKIYPKLKQYHGEILAEKAMMGGEYA 190

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             ++G+  L    I +PK  FY YE KY   ++ +  P+ +  +  +++  LA  A +AI
Sbjct: 191 IPLLGEQVLPSIRI-IPKGKFYDYEAKYLRDDTIYQCPSDLTPEQERQMGELALKAFRAI 249

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           G RG SR DF       K++ LEIN  PGMT  S+ P  A  AG  F EL L ++  
Sbjct: 250 GGRGWSRVDF-LKGHDGKLYVLEINTVPGMTDHSLVPMAAKEAGIGFDELCLQILRQ 305


>gi|114327090|ref|YP_744247.1| D-alanine--D-alanine ligase [Granulibacter bethesdensis CGDNIH1]
 gi|122327928|sp|Q0BV28|DDL_GRABC RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|114315264|gb|ABI61324.1| D-alanine--D-alanine ligase [Granulibacter bethesdensis CGDNIH1]
          Length = 307

 Score =  327 bits (838), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 132/304 (43%), Positives = 189/304 (62%), Gaps = 8/304 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL--KPDLAFNVL 58
           + VL GGIS ER VSL SG+   +AL +AG++V+ I+V   +   +A L   PD+ FN L
Sbjct: 6   VVVLYGGISEERAVSLISGQQVVAALREAGYEVTPIEVGADLRDTIAALTPAPDVVFNAL 65

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
           HG FGEDG +Q +L+ L IPYTHSG+ ASA++MDK  ++    + G+PV    LV    +
Sbjct: 66  HGRFGEDGAIQGVLDWLNIPYTHSGVRASAIAMDKAAARTAFLAAGLPVAEGRLVTVEEL 125

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
             Q  +  P+VIKP   GS++G+ ++ +  +   ++  + SW+ G Q L+E+Y+ G ELT
Sbjct: 126 AEQDPLPRPFVIKPANEGSAVGVHILHEGDNRRTEI--ARSWSFGGQALVEEYIPGRELT 183

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
            GV+ D +L VT+I  P+S FY YE KY+   S H+LPA++  D +K    +A  AH A+
Sbjct: 184 VGVLNDRALTVTDIR-PRSAFYDYESKYAEGGSRHILPAQMHPDAFKRALDVALAAHHAL 242

Query: 239 GCRGISRSDFLFDP---LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           GCRG +RSDF +D       ++  LE+N QPG+TP S+ PE AA  G  F  L  WMVE 
Sbjct: 243 GCRGATRSDFRYDDTRAEPGRLVLLEVNTQPGLTPTSLLPEQAALMGMDFVSLCRWMVEQ 302

Query: 296 ASCL 299
           A+C 
Sbjct: 303 ATCR 306


>gi|254967109|gb|ACT97597.1| putative D-alanine-D-alanine ligase [uncultured organism]
          Length = 304

 Score =  327 bits (838), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 110/299 (36%), Positives = 162/299 (54%), Gaps = 7/299 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSEREVSL SG A  +AL+  G      D   +    L       AFN+LHG
Sbjct: 7   VAVLMGGFSSEREVSLDSGAAILAALKSKGVDAHAFDPKETPLSELKTQGFQTAFNILHG 66

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-ILVNRFTMD 119
            FGEDG VQ  LEL+ IPYT SG+ ASAL MDK R K +  + G+PV    +L +    D
Sbjct: 67  TFGEDGAVQGALELMGIPYTGSGVAASALGMDKYRCKLIWQAVGLPVPEFAVLHDDSDFD 126

Query: 120 S-QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           + +  +  P  +KP   GSS+G++ +K+   +    +     +   +++ E+++ G E +
Sbjct: 127 AVEEKLGLPMFVKPAAEGSSVGVVKVKEKGRLKS--VYEELKHLQGEIIAERFIGGGEYS 184

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQA 237
           C V+    L    I +P ++FY YE KY+  ++ +  P   +  D    ++ LA    QA
Sbjct: 185 CPVLNGKGLPSIHI-IPATEFYDYEAKYNRDDTVYQCPSEDLSEDEENLMRELAVRGAQA 243

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           IG  G SR DF       K++ LEIN  PGMT  S+ P+ AA+ G  F +L + +++ A
Sbjct: 244 IGADGCSRVDF-LKDTDGKLYLLEINTLPGMTSHSLVPKSAAHTGVDFADLCIEILKTA 301


>gi|294787903|ref|ZP_06753147.1| D-alanine--D-alanine ligase B [Simonsiella muelleri ATCC 29453]
 gi|294484196|gb|EFG31879.1| D-alanine--D-alanine ligase B [Simonsiella muelleri ATCC 29453]
          Length = 306

 Score =  327 bits (838), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 107/299 (35%), Positives = 164/299 (54%), Gaps = 5/299 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSEREVSL SG A  +AL+  G      D   +    L +   D+AFN LHG
Sbjct: 7   VAVLMGGFSSEREVSLDSGNAILTALKSKGVDAHAFDPAETELFELKNQGFDIAFNTLHG 66

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--FTM 118
           ++GEDG VQ  LE L IPYT  G+LASA+ MDK RSK +  +  +PV P +++       
Sbjct: 67  SYGEDGTVQGALEALAIPYTGCGVLASAIGMDKYRSKLLWQALNLPVPPFVILTDTSDFT 126

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
             +  +  P  IKP   GSS+G+  IK    +     +    +   +++ E+++ G E T
Sbjct: 127 AVEAQLGLPMFIKPAAEGSSVGVYKIKTVGELQQKYQELRDQHMHGEIMAEKFMSGGEYT 186

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           CGV+   +    +I +P+++FY YE KY+  ++ ++ P+ +     + ++ LA  A +AI
Sbjct: 187 CGVIYRKAFPSIKI-IPQNEFYDYEAKYNRDDTIYLCPSDLIPADEQLMRDLALKAFEAI 245

Query: 239 GCR-GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           G      R DF       K++ LE N  PGMT  S+ P+ A  AG +F +L + +++ A
Sbjct: 246 GGGNNCGRVDF-LRDADGKIYILEANTLPGMTSHSLIPKSAQVAGVAFADLCIDILKTA 303


>gi|294666421|ref|ZP_06731665.1| D-alanylalanine synthetase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
 gi|292603790|gb|EFF47197.1| D-alanylalanine synthetase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
          Length = 318

 Score =  326 bits (837), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 107/302 (35%), Positives = 161/302 (53%), Gaps = 11/302 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG SSEREVSL+SG     AL   G     +D   ++   L   + D  FNVLHG
Sbjct: 19  VAVLLGGTSSEREVSLNSGSNVLEALRARGVDAQPVDGIAALAKALVAQQFDRVFNVLHG 78

Query: 61  --NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN---- 114
               GEDG+VQ ++E   +PYT S +L SALSMDK+R+KQV  S G+       +     
Sbjct: 79  HNGGGEDGIVQGLMEAFGVPYTGSDVLGSALSMDKIRTKQVWLSLGLSTPRYARLAAGAS 138

Query: 115 -RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
                 +   I  P ++KP   GSS+G+  +     +   +  ++   +   LL+EQ ++
Sbjct: 139 AEDIHAAARQIGLPIIVKPANEGSSVGVSRVFDQAQLEEAVTLAA--RYDGALLMEQLIE 196

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           G ELT  V+GD +L    I VPK  +Y Y  KY + ++ ++ P  +  +   ++++LA  
Sbjct: 197 GDELTVAVLGDTALPSIRI-VPKGQWYDYNAKYIAEDTQYLCP-GLEGEAEAQIRQLALD 254

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           A  A GCRG  R D + D  S +++ LE+N  PGMT  S+ P+ A   G  F  L+  ++
Sbjct: 255 AFHAAGCRGWGRVDVMRDGSSGQLYLLEVNTAPGMTSHSLVPKAARQLGIDFETLVWRVL 314

Query: 294 ED 295
           E 
Sbjct: 315 EQ 316


>gi|261379331|ref|ZP_05983904.1| D-alanine--D-alanine ligase B [Neisseria subflava NJ9703]
 gi|284797768|gb|EFC53115.1| D-alanine--D-alanine ligase B [Neisseria subflava NJ9703]
          Length = 304

 Score =  326 bits (837), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 111/300 (37%), Positives = 163/300 (54%), Gaps = 9/300 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSEREVSL SG A  +AL+  G      D   +    L       AFN+LHG
Sbjct: 7   VAVLMGGFSSEREVSLDSGAAILAALKSKGVDAHAFDPKETPLSELKTQGFQTAFNILHG 66

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-ILVNRFTMD 119
            FGEDG VQ  LEL+ IPYT SG+ ASAL MDK R K +  + G+PV    +L +    D
Sbjct: 67  TFGEDGAVQGALELMGIPYTGSGVAASALGMDKYRCKLIWQAVGLPVPEFAVLHDDSDFD 126

Query: 120 S-QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH-GDQLLIEQYVDGIEL 177
           + +  +  P  +KP   GSS+G++ +K+   +     +   + H   +++ E+++ G E 
Sbjct: 127 AVEEKLGLPMFVKPAAEGSSVGVVKVKEKGRLKSVYEE---FKHLQGEIIAERFIGGGEY 183

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQ 236
           +C V+    L    I +P ++FY YE KY+  ++ +  P   +  D    ++ LA    Q
Sbjct: 184 SCPVLNGKGLPSIHI-IPATEFYDYEAKYNRDDTVYQCPSEDLSEDEENLMRELAVRGAQ 242

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           AIG  G SR DF       K++ LEIN  PGMT  S+ P+ AA+ G  F +L + +++ A
Sbjct: 243 AIGADGCSRVDF-LKDTDGKLYLLEINTLPGMTSHSLVPKSAAHTGVDFADLCIEILKTA 301


>gi|157147020|ref|YP_001454339.1| D-alanyl-alanine synthetase A [Citrobacter koseri ATCC BAA-895]
 gi|157084225|gb|ABV13903.1| hypothetical protein CKO_02797 [Citrobacter koseri ATCC BAA-895]
          Length = 371

 Score =  326 bits (837), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 89/348 (25%), Positives = 165/348 (47%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50
           + ++ GG S+E EVSL S K    A++ A F V  + +D+     ++  +          
Sbjct: 12  VGIVFGGKSAEHEVSLQSAKNIVDAIDKARFDVVLLGIDKQGQWHVSDAENYLLNANDPA 71

Query: 51  ---------------------------------PDLAFNVLHGNFGEDGLVQAILELLEI 77
                                             D+ F ++HG  GEDG +Q +L +  +
Sbjct: 72  HIALRPSSTSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 131

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVIK 131
           P+  S +L SA  MDK  +K+++   G+ + P I + R   D+         +  P  +K
Sbjct: 132 PFVGSDVLGSAACMDKDVTKRLLRDAGLNIAPFITLTRANRDAIRFAEVASRLGLPLFVK 191

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  +  +      +  +  ++H  ++++EQ + G E+ C V+G+     + 
Sbjct: 192 PANQGSSVGVSKVTSEAQYEQAVALAFEFDH--KVVVEQGIKGREIECAVLGNDHPQAST 249

Query: 192 IA--VPKSDFYSYELKYSSLN-STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               V  SDFY+Y+ KY   N +  V+PA+IP ++  +++++A  A+Q +GC G++R D 
Sbjct: 250 CGEIVLNSDFYAYDTKYIDGNGAQVVVPAQIPQEVNDKIRQIAIQAYQTLGCAGMARVDV 309

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                  +V   EIN  PG T +S++P++   +G  + +L+  ++E A
Sbjct: 310 FLTA-ENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 356


>gi|220933952|ref|YP_002512851.1| D-alanine/D-alanine ligase [Thioalkalivibrio sp. HL-EbGR7]
 gi|219995262|gb|ACL71864.1| D-alanine/D-alanine ligase [Thioalkalivibrio sp. HL-EbGR7]
          Length = 309

 Score =  326 bits (837), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 100/295 (33%), Positives = 160/295 (54%), Gaps = 6/295 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+ERE+SL SG     AL+ AG     ID  R V  VL     D  FN+LHG
Sbjct: 9   VAVLLGGWSAEREISLISGGEVLKALQAAGVDAHGIDAGRDVLEVLKAGGFDRVFNMLHG 68

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119
             GEDG++Q  LEL+ +P T SG+L SA+SMDK+ +K++    G+P     +++  T   
Sbjct: 69  RGGEDGVIQGALELIGLPCTGSGVLGSAVSMDKLMTKRLWRGAGLPTPDYQVLDGDTDWV 128

Query: 120 -SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                +  P ++KP   GSS+G+  ++    +P    ++++   G  +  E++V G E T
Sbjct: 129 VVASGLGLPLIVKPALEGSSIGMSKVETVGDLPEAYARAAA--CGGPVFAERWVTGTEYT 186

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             ++    L +  +  P++ FY YE KY +  + + +P  +   + +  Q LA  A +A+
Sbjct: 187 AAILEGEPLPLIRLETPRA-FYDYEAKYKAETTRYHVPCGLEAAVEQRFQSLALQAFEAV 245

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           G RG  R D + D +    + +E+N  PGMT  S+ P  A  AG  F+ L+L ++
Sbjct: 246 GARGWGRVDLMVDRV-GVPWLIEVNTVPGMTDHSLVPMAARAAGLDFQALVLRIL 299


>gi|53729117|ref|ZP_00348323.1| COG1181: D-alanine-D-alanine ligase and related ATP-grasp enzymes
           [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
 gi|126207508|ref|YP_001052733.1| D-alanine--D-alanine ligase [Actinobacillus pleuropneumoniae L20]
 gi|165975478|ref|YP_001651071.1| D-alanine--D-alanine ligase [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
 gi|190149289|ref|YP_001967814.1| D-alanine--D-alanine ligase [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|303250499|ref|ZP_07336696.1| D-alanine--D-alanine ligase [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|307244821|ref|ZP_07526920.1| D-alanine--D-alanine ligase [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|307249219|ref|ZP_07531216.1| D-alanine--D-alanine ligase [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|307251541|ref|ZP_07533448.1| D-alanine--D-alanine ligase [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|307253775|ref|ZP_07535629.1| D-alanine--D-alanine ligase [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|307256041|ref|ZP_07537829.1| D-alanine--D-alanine ligase [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
 gi|307260471|ref|ZP_07542166.1| D-alanine--D-alanine ligase [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
 gi|307262602|ref|ZP_07544232.1| D-alanine--D-alanine ligase [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
 gi|166198470|sp|A3MY92|DDL_ACTP2 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|190359107|sp|B0BRH9|DDL_ACTPJ RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|229485852|sp|B3GZL0|DDL_ACTP7 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|126096300|gb|ABN73128.1| D-alanine--D-alanine ligase [Actinobacillus pleuropneumoniae
           serovar 5b str. L20]
 gi|165875579|gb|ABY68627.1| D-alanine-D-alanine ligase B [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
 gi|189914420|gb|ACE60672.1| D-alanine--D-alanine ligase [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|302650487|gb|EFL80646.1| D-alanine--D-alanine ligase [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|306854266|gb|EFM86472.1| D-alanine--D-alanine ligase [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|306858743|gb|EFM90802.1| D-alanine--D-alanine ligase [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|306861005|gb|EFM93011.1| D-alanine--D-alanine ligase [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|306863259|gb|EFM95199.1| D-alanine--D-alanine ligase [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|306865463|gb|EFM97358.1| D-alanine--D-alanine ligase [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
 gi|306869874|gb|EFN01656.1| D-alanine--D-alanine ligase [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
 gi|306872025|gb|EFN03739.1| D-alanine--D-alanine ligase [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
          Length = 303

 Score =  326 bits (837), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 102/301 (33%), Positives = 164/301 (54%), Gaps = 9/301 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG+S EREVSL+SG A   AL+  G+ V  ID        L        FN+LHG
Sbjct: 8   IAVLFGGVSQEREVSLNSGAAVTEALKSLGYNVEGIDTKDFPIEKLKEKGIQRVFNILHG 67

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GE+G++Q  LE + IPYT  G++ASA+++DK R+K +  + G+P    ++V R     
Sbjct: 68  GIGENGVLQGALEQMGIPYTGCGVMASAVTLDKFRTKLMWQAVGLPTADMVVVRRGEAVD 127

Query: 121 QH----LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
                  +  P  +KP   GSS+G+  +K  + +   + ++  +     +L+E ++ G E
Sbjct: 128 SEQIIAKLGLPVFVKPSSEGSSVGVTKVKTVEQLLPAVEEALKF--DSIVLVEAFLAGKE 185

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
            +  V+    L   +I +P+ +FY Y  KY S N+ +++PA +  D   EV  L   A++
Sbjct: 186 YSVPVLDGQVLPAVQI-IPEGEFYDYHAKYISDNTQYLVPA-LSDDRQAEVAELVKAAYE 243

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            +GCRG SR D + +  +     +E+N  PGMT  SIFP+ AA  G  F +L+  ++E +
Sbjct: 244 VVGCRGWSRIDVM-EDANGHFNLVEVNTCPGMTSHSIFPKSAATVGIPFEKLVERVLELS 302

Query: 297 S 297
           +
Sbjct: 303 A 303


>gi|284048637|ref|YP_003398976.1| D-alanine/D-alanine ligase [Acidaminococcus fermentans DSM 20731]
 gi|283952858|gb|ADB47661.1| D-alanine/D-alanine ligase [Acidaminococcus fermentans DSM 20731]
          Length = 310

 Score =  326 bits (837), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 105/306 (34%), Positives = 171/306 (55%), Gaps = 13/306 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59
           +AV+MGG S EREVSL++G A  +AL++ G+    ID+D   +   L      + FN +H
Sbjct: 7   VAVVMGGPSKEREVSLNTGNAILNALKEKGYDAVAIDLDPEHIVDQLKASGARVVFNAVH 66

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G +GEDG +Q ILE+L IPYT SG+LASAL+MDK+ +K +  +  VP    I +++    
Sbjct: 67  GLYGEDGRLQGILEMLGIPYTGSGVLASALAMDKVYTKHLFQNNHVPTARCIFLDKKRDQ 126

Query: 120 SQ-----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
                    I  P V+KP   GSS+G++++K ++ +  D     ++ +GD +L E +  G
Sbjct: 127 DPKARILEEIGIPCVVKPATQGSSIGVVIVKDEKQL--DDALQEAFQYGDHVLCEAFFTG 184

Query: 175 IELTCGVMGDASLDVTEIAV----PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            E+  GVM         + +    P  +FY +  KY+   +T+  PA    +  + +Q++
Sbjct: 185 KEVAAGVMMGEDGRAVPMPLVLIEPHVNFYDFHNKYTKGATTYTCPAPFDAETTRRLQKI 244

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A  A++A+GC G++R+D +    +     LE+N  PGMT  S+ P+ AA  G SF +L  
Sbjct: 245 AVAAYEALGCSGVARTDLML-ADNGDCIALEVNTIPGMTATSLIPKAAAAMGISFPDLCE 303

Query: 291 WMVEDA 296
            +++ A
Sbjct: 304 KILKTA 309


>gi|85707769|ref|ZP_01038835.1| D-alanyl-D-alanine ligase [Erythrobacter sp. NAP1]
 gi|85689303|gb|EAQ29306.1| D-alanyl-D-alanine ligase [Erythrobacter sp. NAP1]
          Length = 332

 Score =  326 bits (837), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 127/304 (41%), Positives = 186/304 (61%), Gaps = 9/304 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG ++EREVSL SG   + ALE  G +V+QID+DR V   +   KPD+ FN LHG
Sbjct: 18  VAVLMGGWANEREVSLMSGAGVSDALEMNGHRVTQIDMDRDVAQRITEAKPDVVFNALHG 77

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG VQ +L+L+ + YTHSG+  S +++DK  +KQ +   GVP     +V    +  
Sbjct: 78  VPGEDGSVQGMLDLMGVAYTHSGMATSVIAIDKQLTKQALIPHGVPFPGGRIVATKDIFE 137

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSI--PLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           +  +  PYV+KP+  GSS+G+ ++ +D ++  P++      W   DQLL E ++ G ELT
Sbjct: 138 RDPLPRPYVLKPVNEGSSVGVAIVTEDSNVGNPINRDAPGPWQQFDQLLAEPFIKGRELT 197

Query: 179 CGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
             V+    G  +L VTE+ + +  FY YE KY+   + HV PA IP +I    +  A  A
Sbjct: 198 TAVIDGADGPRALGVTELII-EHGFYDYEHKYTEGRTQHVCPADIPAEIAALCEDYAIRA 256

Query: 235 HQAIGCRGISRSDFLFDPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           H+ +GC G SR+DF +D  + +  +F LE N QPGMTP+S+ PE A +AG S+ EL+  +
Sbjct: 257 HKVLGCHGTSRTDFRWDDEAGEDGLFVLETNTQPGMTPLSLVPEQAKHAGISYPELVELI 316

Query: 293 VEDA 296
           V +A
Sbjct: 317 VREA 320


>gi|260596746|ref|YP_003209317.1| D-alanine--D-alanine ligase A [Cronobacter turicensis z3032]
 gi|260215923|emb|CBA28502.1| D-alanine--D-alanine ligase A [Cronobacter turicensis z3032]
          Length = 366

 Score =  326 bits (837), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 92/348 (26%), Positives = 164/348 (47%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP- 51
           + ++ GG S+E EVSL S K    A++   F V  + +D+            +L    P 
Sbjct: 6   VGIVFGGKSAEHEVSLQSAKNIVDAIDKEKFDVVLLGIDKQGQWHVNDASRYLLNAEDPA 65

Query: 52  ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
                                             D+ F ++HG  GEDG +Q +L +  I
Sbjct: 66  RIALHRSEKNVALIPGLSQQQLIESDNRQALPQLDVIFPIVHGTLGEDGSLQGMLRMANI 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLISPPYVIK 131
           P+  SG+L SA+SMDK  +K+++   G+ V P I + R         + +  +  P  +K
Sbjct: 126 PFVGSGVLGSAVSMDKDVAKRLLRDAGLAVAPFITLTRANRQRITFAEVKAQLGLPLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  +  +      +  +  ++H  ++++E  + G E+ C V+G+     + 
Sbjct: 186 PANQGSSVGVSKVNDEAQYHAAVALAFEFDH--KVVVETGIKGREIECAVLGNEEPQAST 243

Query: 192 IA--VPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               V  S+FYSY+ KY    +   V+PA I  D+ ++++ +A  A QA+ C G++R D 
Sbjct: 244 CGEIVVSSEFYSYDTKYIDDQAARVVVPADIAPDVNEKIRAIAVRAFQALECAGLARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              P   +V   EIN  PG T +S++P++   +G  +++L+  ++E A
Sbjct: 304 FLTP-DNEVIINEINTLPGFTNISMYPKLWQASGMGYQQLITRLIELA 350


>gi|94268696|ref|ZP_01291259.1| D-alanine--D-alanine ligase [delta proteobacterium MLMS-1]
 gi|93451501|gb|EAT02328.1| D-alanine--D-alanine ligase [delta proteobacterium MLMS-1]
          Length = 314

 Score =  326 bits (836), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 113/309 (36%), Positives = 174/309 (56%), Gaps = 13/309 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLA-HLKPDLAFNVLH 59
           +A+L GG S+EREVSLS       AL  + ++V + D    +  + A     D+AF +LH
Sbjct: 9   VALLAGGKSAEREVSLSGAAGVEKALAGSRYRVRRYDPATDLPRLAADAASIDVAFVLLH 68

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G  GEDG +Q  L+LL IPY  SG+L SAL+MDK  +K++    G+ V    +     + 
Sbjct: 69  GTLGEDGTIQGFLDLLGIPYQGSGVLGSALAMDKDLAKELYRLAGLKVPAWEMARPADIA 128

Query: 120 SQH----LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175
             H    L+SPP V+KP++ GSSLG+ ++  ++ +   L   +++ H DQ+++EQ+V G 
Sbjct: 129 EPHRLLALLSPPLVVKPVRQGSSLGMSIVDAEEELTPAL--ETAFAHDDQVMVEQFVAGR 186

Query: 176 ELTCGVMGDA---SLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           E+T GV+G+    +L V EI   +   F+ Y+ KY    S  V PA++P  +  +VQ  A
Sbjct: 187 EVTGGVLGNDQLTALPVVEIIPGEQYRFFDYQAKYQPGASREVCPAELPPAVTAQVQEWA 246

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             AH+ +  +G SR+D +       ++ LE N  PGMTP S+FP+ AA  G  F  LL  
Sbjct: 247 CRAHRVLRLKGYSRTDMILAADG--LYVLETNTIPGMTPTSLFPQAAAAHGLDFGALLDR 304

Query: 292 MVEDASCLR 300
           +++ A   R
Sbjct: 305 LLQLAREDR 313


>gi|184159849|ref|YP_001848188.1| D-alanine--D-alanine ligase [Acinetobacter baumannii ACICU]
 gi|239503826|ref|ZP_04663136.1| D-alanine--D-alanine ligase [Acinetobacter baumannii AB900]
 gi|260550190|ref|ZP_05824403.1| D-alanine-D-alanine ligase B [Acinetobacter sp. RUH2624]
 gi|260557902|ref|ZP_05830115.1| D-alanine-D-alanine ligase B [Acinetobacter baumannii ATCC 19606]
 gi|332872845|ref|ZP_08440810.1| D-ala D-ala ligase protein [Acinetobacter baumannii 6014059]
 gi|229485849|sp|B2I1J3|DDL_ACIBC RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|229485853|sp|A3M9X9|DDL_ACIBT RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|183211443|gb|ACC58841.1| D-alanine-D-alanine ligase [Acinetobacter baumannii ACICU]
 gi|193078671|gb|ABO13723.2| D-alanine-D-alanine ligase B [Acinetobacter baumannii ATCC 17978]
 gi|260406718|gb|EEX00198.1| D-alanine-D-alanine ligase B [Acinetobacter sp. RUH2624]
 gi|260408693|gb|EEX01998.1| D-alanine-D-alanine ligase B [Acinetobacter baumannii ATCC 19606]
 gi|322509763|gb|ADX05217.1| ddlB [Acinetobacter baumannii 1656-2]
 gi|323519776|gb|ADX94157.1| D-alanine--D-alanine ligase [Acinetobacter baumannii TCDC-AB0715]
 gi|332739006|gb|EGJ69868.1| D-ala D-ala ligase protein [Acinetobacter baumannii 6014059]
          Length = 308

 Score =  326 bits (836), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 101/298 (33%), Positives = 155/298 (52%), Gaps = 8/298 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+ER VSL SG+A   AL  +G +    D        L  +  D AF VLHG
Sbjct: 10  VAVLLGGKSAERAVSLDSGQAVLDALLRSGVQAEAFDPQDRSVTEL--VNYDRAFIVLHG 67

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LE L IPYT +G+  SA+ MDK+++KQ+     +P  P  ++ + T   
Sbjct: 68  RGGEDGQIQGVLEWLNIPYTGTGVQGSAIGMDKVKTKQIWQGSDLPTAPYRIITKETDLD 127

Query: 121 Q--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                +  P +IKP+  GSS+G+  ++K +     + +++   H   ++ E+++ G E T
Sbjct: 128 SVIAELGLPVIIKPVHEGSSVGMSKVEKAEDFAAAIEKAT--QHDAVVMAEKWITGREFT 185

Query: 179 CGVMGDASLDVTEIAVP-KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
              +    L V  +  P    FY YE KY   +  + +P  +     K++Q L   A QA
Sbjct: 186 ISFLNGQPLPVIRLQPPADVAFYDYEAKYQRNDVEYGIPCGLSETEEKKLQALCLRAFQA 245

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           +G  G  R D + D      + LE+N  PGMT  S+ P+ A   GYSF EL + ++E 
Sbjct: 246 VGAEGWGRIDAMQDEQGN-FWLLEVNTVPGMTSHSLVPKAAKAVGYSFDELCVAILEQ 302


>gi|330950222|gb|EGH50482.1| D-alanine--D-alanine ligase [Pseudomonas syringae Cit 7]
          Length = 319

 Score =  326 bits (836), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 112/302 (37%), Positives = 165/302 (54%), Gaps = 6/302 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+ER VSL+SG A   AL +AG     IDV       L   K D AF VLHG
Sbjct: 21  VAVLFGGKSAERAVSLNSGNAVLGALLEAGVDAFGIDVGDDFLQRLVSEKIDRAFIVLHG 80

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--M 118
             GEDG +Q +LE LEIPYT SG+LASAL+MDK+R+KQV  S G+      ++   +  +
Sbjct: 81  RGGEDGTMQGLLECLEIPYTGSGVLASALAMDKLRTKQVWQSLGLATPLHAVLENESDCI 140

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   +  P ++KP   GSS+G+  +     +      +S   +  Q+L+EQ++ G E T
Sbjct: 141 CAVTELGLPLIVKPAHEGSSIGMAKVSSVDELIAAWKAAS--TYDSQVLVEQWIQGPEFT 198

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +    L    +  P S FY Y+ KY + ++ + +P  +     +E+++LA  A  AI
Sbjct: 199 VASLRGQVLPPIGLGTPHS-FYDYDAKYLASDTQYRIPCGLGDAQEQELKQLAARACDAI 257

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           G  G +R+D + D    K + LE+N  PGMT  S  P  A  AG  F++L+L ++ D+  
Sbjct: 258 GIAGWARTDVMQDAQ-GKFWLLEVNTVPGMTDHSQVPMAARAAGLDFQQLVLAILADSVQ 316

Query: 299 LR 300
            R
Sbjct: 317 AR 318


>gi|257465206|ref|ZP_05629577.1| D-alanine--D-alanine ligase [Actinobacillus minor 202]
 gi|257450866|gb|EEV24909.1| D-alanine--D-alanine ligase [Actinobacillus minor 202]
          Length = 303

 Score =  326 bits (836), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 107/301 (35%), Positives = 166/301 (55%), Gaps = 9/301 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG+S+EREVSL+SGK+   AL+  G+ V  ID        L        FN+LHG
Sbjct: 8   IAVLFGGVSAEREVSLNSGKSVFEALQSLGYNVEAIDTKEFPIEKLKEKGIQRVFNILHG 67

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118
             GE+G++Q  LE L IPYT  G++ASA+++DK R+K + ++ G+P     +V R     
Sbjct: 68  GIGENGVLQGALEQLGIPYTGCGVMASAITLDKFRTKLLWNAVGLPTAAMEVVRRGQAVN 127

Query: 119 --DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
             +    +  P  +KP   GSS+G+  +K  + +   + ++  +     +L+E+ + G E
Sbjct: 128 SDEIIAKLGLPLFVKPASEGSSVGVSKVKTAEQLIPAIEEALKF--DSIVLVEENLAGAE 185

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
            +  V+    L   +I +P  +FY Y  KY S N+ +V+PA +  D   EV +L   A+ 
Sbjct: 186 YSVPVLDGEVLPAVQI-IPDGEFYDYHAKYISDNTQYVVPA-LNADRQAEVAKLVKQAYD 243

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            +GCRG SR D + D        +E+N  PGMT  SIFP+ AA  GYSF  L+  ++E +
Sbjct: 244 VVGCRGWSRIDVMEDGEGN-FRLVEVNTCPGMTSHSIFPKSAATVGYSFERLVERVLELS 302

Query: 297 S 297
           +
Sbjct: 303 A 303


>gi|158319344|ref|YP_001511851.1| D-alanine--D-alanine ligase [Alkaliphilus oremlandii OhILAs]
 gi|158139543|gb|ABW17855.1| D-alanine--D-alanine ligase [Alkaliphilus oremlandii OhILAs]
          Length = 368

 Score =  326 bits (836), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 89/354 (25%), Positives = 162/354 (45%), Gaps = 60/354 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           + V+ GG S E EVSL S  +   A+    + ++ + + +     L              
Sbjct: 6   VMVVFGGRSGEHEVSLMSATSVLRAMNKEKYNITTVGITKKGIWKLYRGSIDKIQSGEWE 65

Query: 47  ---------------------------------AHLKPDLAFNVLHGNFGEDGLVQAILE 73
                                               K D+ F VLHG FGEDG +Q + E
Sbjct: 66  GIADNWAKENNFSTNISVLPSEEGKGIINFGDGKTEKIDVVFPVLHGPFGEDGTIQGLFE 125

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTMDS-------QHLI 124
           ++ IPY  +G+LAS+L+MDK  SK++    G+P       LV  +  +        +   
Sbjct: 126 MMNIPYVGTGVLASSLAMDKAMSKKLFELEGIPQAKYHAFLVKEYKENEKEVLDTIEEKF 185

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
           + P  +KP   GSS+GI  +   + +   +  ++   +  ++++E+ ++G E+ C V+G+
Sbjct: 186 TYPVFVKPANMGSSVGITKVHNREKLEKAIELAA--KYDRKIVVEEGINGREIECSVLGN 243

Query: 185 ASLDVTEIA--VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
                +  A  +P ++FY Y  KY +  S   +PA +P D+ + ++ L+   ++ + C G
Sbjct: 244 DEPIASLPAEIIPSAEFYDYNDKYFAGTSKFEIPANLPEDVIEGIRSLSVKVYKLLDCSG 303

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +SR D   +  S ++   E+N  PG T +S++P+M    G  + EL+  ++E A
Sbjct: 304 LSRVDCFIERDSNRILLNEVNTMPGFTQISMYPKMWEATGIEYEELIDRLIELA 357


>gi|293610570|ref|ZP_06692870.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292826914|gb|EFF85279.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 308

 Score =  326 bits (836), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 100/298 (33%), Positives = 153/298 (51%), Gaps = 8/298 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+ER VSL SG+A   AL  +G +    D        L  +  D AF VLHG
Sbjct: 10  VAVLFGGKSAERAVSLDSGQAVLDALLRSGVQAEAFDPQDRSVTEL--VNYDRAFIVLHG 67

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LE L +PYT +G+  SA+ MDK+++KQ+     +P  P  ++ + T   
Sbjct: 68  RGGEDGQIQGVLEWLNLPYTGTGVQGSAIGMDKVKTKQIWQGSDLPTAPYRIITKETDLD 127

Query: 121 Q--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                +  P +IKP+  GSS+G+  ++K +     + +++   H   ++ E+++ G E T
Sbjct: 128 AVIADLGLPVIIKPVHEGSSVGMSKVEKAEDFAAAIEKAT--QHDAVVMAEKWITGREFT 185

Query: 179 CGVMGDASLDVTEIAVP-KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
              +    L V  +  P    FY YE KY   +  + +P  +     K +Q L   A QA
Sbjct: 186 ISFLNGQPLPVIRLQPPADVAFYDYEAKYQRNDVEYGIPCGLSETEEKNLQALCLRAFQA 245

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           +G  G  R D + D      + LE+N  PGMT  S+ P+ A   GYSF EL + ++E 
Sbjct: 246 VGAEGWGRIDAMQDEQGN-FWLLEVNTVPGMTSHSLVPKAAKAVGYSFDELCVAILEQ 302


>gi|325123864|gb|ADY83387.1| D-alanine-D-alanine ligase B [Acinetobacter calcoaceticus PHEA-2]
          Length = 308

 Score =  326 bits (836), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 100/298 (33%), Positives = 153/298 (51%), Gaps = 8/298 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+ER VSL SG+A   AL  +G +    D        L  +  D AF VLHG
Sbjct: 10  VAVLFGGKSAERAVSLDSGQAVLDALLRSGVQAEAFDPQDRSVTEL--VNYDRAFIVLHG 67

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LE L +PYT +G+  SA+ MDK+++KQ+     +P  P  ++ + T   
Sbjct: 68  RGGEDGQIQGVLEWLNLPYTGTGVQGSAIGMDKVKTKQIWQGSDLPTAPYRIITKETDLD 127

Query: 121 Q--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                +  P +IKP+  GSS+G+  ++K +     + +++   H   ++ E+++ G E T
Sbjct: 128 AVIADLGLPVIIKPVHEGSSVGMSKVEKAEDFAAAIEKAT--QHDAVVMAEKWITGREFT 185

Query: 179 CGVMGDASLDVTEIAVP-KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
              +    L V  +  P    FY YE KY   +  + +P  +     K +Q L   A QA
Sbjct: 186 ISFLNGQPLPVIRLQPPADVAFYDYEAKYQRNDVEYGIPCGLSEAEEKNLQALCLRAFQA 245

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           +G  G  R D + D      + LE+N  PGMT  S+ P+ A   GYSF EL + ++E 
Sbjct: 246 VGAEGWGRIDAMQDEQGN-FWLLEVNTVPGMTSHSLVPKAAKAVGYSFDELCVAILEQ 302


>gi|225848999|ref|YP_002729163.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB)
           (D-Ala-D-Ala ligase B) [Sulfurihydrogenibium azorense
           Az-Fu1]
 gi|225644020|gb|ACN99070.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB)
           (D-Ala-D-Ala ligase B) [Sulfurihydrogenibium azorense
           Az-Fu1]
          Length = 303

 Score =  326 bits (836), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 96/297 (32%), Positives = 156/297 (52%), Gaps = 6/297 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--DRSVGLVLAHLKPDLAFNVL 58
           +A+L GG S ERE+S+ SGKA   AL+  G+     D          +   KPDLAF  L
Sbjct: 5   IALLYGGYSREREISIKSGKAVEGALQRLGYTYKVFDPVEREKFLEEIVDYKPDLAFIAL 64

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
           HG  GEDG +Q++LE L IPYT S    S + MDK+ +K  +    +             
Sbjct: 65  HGKGGEDGTIQSLLEFLGIPYTGSDPKTSMICMDKVLTKMYLEKFNINTPKWSFFLNIED 124

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                   P V+K    GSS+G+ ++         +     +   +++L+EQ++ G ELT
Sbjct: 125 ALSFYPEFPVVVKAPNEGSSIGVYIVNNQDEYKKAVEDV--FKLDEKVLVEQFIKGRELT 182

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
            G++ D   D+ E+ V +  FY Y+ KY +  + ++ PA++P ++YK VQ + +  ++++
Sbjct: 183 VGILDDEVFDIVEVVV-EEGFYDYQNKYITGKTKYICPAQLPPEVYKTVQDIGYKTYKSL 241

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
            C+G +R D + D  S   + LE+N  PGMT  S+ P+ AA  G SF +L+  +++ 
Sbjct: 242 NCKGQARVDIILD-YSLTPYVLEVNTVPGMTEFSLLPKAAAVKGISFDQLVDRIIKS 297


>gi|156935075|ref|YP_001438991.1| hypothetical protein ESA_02926 [Cronobacter sakazakii ATCC BAA-894]
 gi|156533329|gb|ABU78155.1| hypothetical protein ESA_02926 [Cronobacter sakazakii ATCC BAA-894]
          Length = 366

 Score =  326 bits (836), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 95/348 (27%), Positives = 166/348 (47%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP- 51
           + ++ GG S+E EVSL S K    A++   F V  + +D+            +L    P 
Sbjct: 6   VGIVFGGKSAEHEVSLQSAKNIVDAIDKEKFDVVLLGIDKQGQWHVNDASRYLLNAEDPA 65

Query: 52  ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
                                             D+ F ++HG  GEDG +Q +L +  I
Sbjct: 66  RIALHRSEKNVALIPGLSEQQLIESDNRQALPQLDVIFPIVHGTLGEDGSLQGMLRMANI 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLISPPYVIK 131
           P+  SG+L SA+SMDK  +K+++   G+ V P I + R         D +  +  P  +K
Sbjct: 126 PFVGSGVLGSAVSMDKDVAKRLLRDAGLAVAPFITLTRANRQRITFEDVKAQLGLPLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  +  +      +  +  ++H  ++++E  + G E+ C V+G+ S   + 
Sbjct: 186 PANQGSSVGVSKVNDEAQYHAAVALAFEFDH--KVVVETGIKGREIECAVLGNDSPQAST 243

Query: 192 IA--VPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               V  S+FYSY++KY    +   V+PA I  D+ ++++ +A  A QA+ C G++R D 
Sbjct: 244 CGEIVVSSEFYSYDIKYIDDQAARVVVPADIAPDVNEKIRAIAIRAFQALECAGLARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              P   +V   EIN  PG T +S++P++   +G  ++EL+  ++E A
Sbjct: 304 FLTP-DNEVIINEINTLPGFTNISMYPKLWQASGIGYQELITRLIELA 350


>gi|206580748|ref|YP_002240164.1| D-alanine--D-alanine ligase A [Klebsiella pneumoniae 342]
 gi|206569806|gb|ACI11582.1| D-alanine--D-alanine ligase A [Klebsiella pneumoniae 342]
          Length = 365

 Score =  326 bits (836), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 90/348 (25%), Positives = 162/348 (46%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP- 51
           + ++ GG S+E EVSL S K    A++ + F V  + +D+            +L    P 
Sbjct: 6   VGIVFGGKSAEHEVSLQSAKNIVEAIDKSRFDVVLLGIDKQGLWHINDAGNYLLNAQDPA 65

Query: 52  ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
                                             D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  RIALRPSTVTLAQIPGREAQQLINADSGQPLAAIDVIFPIVHGTLGEDGSLQGMLRMANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLISPPYVIK 131
           P+  S +L SA  MDK  +K+++   G+ V P I + R         D +  +  P  +K
Sbjct: 126 PFVGSDVLGSAACMDKDVTKRLLRDAGLAVAPFITLTRANRAQFSFADVEAKLGLPLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  +K ++     +  +  ++H  ++++EQ + G E+ C V+G+     + 
Sbjct: 186 PANQGSSVGVSKVKNEEQYHQAVALAFEFDH--KVVVEQGIKGREIECAVLGNDHPQAST 243

Query: 192 IA--VPKSDFYSYELKYSSL-NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               V  S+FY+Y+ KY     +  V+PA I  +I  +++ +A  A+Q +GC G++R D 
Sbjct: 244 CGEIVLNSEFYAYDTKYIDDQGAQVVVPAAIAPEINDKIRAIAVQAYQTLGCSGMARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                  +V   EIN  PG T +S++P++   +G  +  L+  ++E A
Sbjct: 304 FLTA-DNEVVINEINTLPGFTNISMYPKLWQASGLDYTSLITRLIELA 350


>gi|187925440|ref|YP_001897082.1| D-alanine--D-alanine ligase [Burkholderia phytofirmans PsJN]
 gi|229463738|sp|B2SYX3|DDL_BURPP RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|187716634|gb|ACD17858.1| D-alanine/D-alanine ligase [Burkholderia phytofirmans PsJN]
          Length = 313

 Score =  326 bits (836), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 101/296 (34%), Positives = 154/296 (52%), Gaps = 11/296 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SG+     L DAG      D        L       AFN LHG
Sbjct: 12  VAVLLGGNSAEREVSLNSGRLVLQGLRDAGVDAHPFDPAERPLAALKEEGFVRAFNALHG 71

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118
            +GE+G +Q  L+   I YT SG+L SAL +DK R+K V    G+P  P   V R     
Sbjct: 72  GYGENGQIQGALDFYGIKYTGSGVLGSALGLDKFRTKLVWQQLGIPTPPFEAVLRGDDYE 131

Query: 119 ----DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD- 173
               +    +  P  +KP   GSS+ +I +K   ++P  L+++    +   +++E+ V+ 
Sbjct: 132 ARSKEIVAKLGLPLFVKPASEGSSVAVIKVKSADALPAALIEAV--KYDKIVVVEKSVEG 189

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           G E T  + G+  L V  I VP  +FY Y  KY + ++ +++P  +  D    ++ LA  
Sbjct: 190 GGEYTACIAGNLDLPVIRI-VPAGEFYDYHAKYIANDTQYLIPCGLAADEEARLKVLARR 248

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           A   +GC    R+DF+ D      ++LE+N  PGMT  S+ P+ A   G S++EL+
Sbjct: 249 AFDVLGCTDWGRADFMLDA-DGNPYFLEVNTAPGMTDHSLPPKAARAVGISYQELV 303


>gi|88858804|ref|ZP_01133445.1| D-alanine-D-alanine ligase B, affects cell division
           [Pseudoalteromonas tunicata D2]
 gi|88819030|gb|EAR28844.1| D-alanine-D-alanine ligase B, affects cell division
           [Pseudoalteromonas tunicata D2]
          Length = 304

 Score =  326 bits (836), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 100/298 (33%), Positives = 162/298 (54%), Gaps = 7/298 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG S+ER+VSL SG+A  +AL   G      D        L  L+ D AF  LHG
Sbjct: 9   VAVLMGGSSAERDVSLRSGQAVLNALISQGVDAFAFDPAERNLFDLKSLQTDRAFIALHG 68

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR-FTMD 119
             GEDG +Q  LE L +PYT SG+L SAL+MDK+R K++  + G+     ++V +    D
Sbjct: 69  RGGEDGTIQGALEFLGLPYTGSGVLGSALAMDKVRCKELFKARGLSSAEFVVVEQGAQFD 128

Query: 120 SQHLISP--PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
           SQ +I+     ++KP   GSS+G+        +   +  S+++   D +++E+++ G E 
Sbjct: 129 SQAIINEFGAVMVKPAHEGSSIGMAKAATASELNEAI--SNAFRFDDTVMLEKWITGREF 186

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           T  ++   +  + E+  P+  FY YE KY + ++ +  PA++     + +Q LA  A + 
Sbjct: 187 TVTMISGVAQPIVEMVTPR-GFYDYEAKYQANSTQYYCPAELSQSETENLQLLAQHAFKL 245

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           +G  G  R D + D    + + LE+N  PGMT  S+ P  A   G +F +L++ ++E 
Sbjct: 246 VGASGWGRVDAMRDQA-GQFYLLEVNTVPGMTEKSLVPMAAKANGMNFSQLVINILEQ 302


>gi|238893305|ref|YP_002918039.1| D-alanylalanine synthetase [Klebsiella pneumoniae NTUH-K2044]
 gi|238545621|dbj|BAH61972.1| D-alanylalanine synthetase [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
          Length = 365

 Score =  326 bits (836), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 90/348 (25%), Positives = 162/348 (46%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP- 51
           + ++ GG S+E EVSL S K    A++ + F V  + +D+            +L    P 
Sbjct: 6   VGIVFGGKSAEHEVSLQSAKNIVEAIDKSRFDVVLLGIDKQGLWHINDAGNYLLNAQDPA 65

Query: 52  ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
                                             D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  RIALRPSTVTLAQIPGREAQQLINAESGQPLAAIDVIFPIVHGTLGEDGSLQGMLRMANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLISPPYVIK 131
           P+  S +L SA  MDK  +K+++   G+ V P I + R         D +  +  P  +K
Sbjct: 126 PFVGSDVLGSAACMDKDVTKRLLRDAGLAVAPFITLTRANRAQFSFADVEAKLGLPLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  +K ++     +  +  ++H  ++++EQ + G E+ C V+G+     + 
Sbjct: 186 PANQGSSVGVSKVKNEEQYHQAVALAFEFDH--KVVVEQGIKGREIECAVLGNDHPQAST 243

Query: 192 IA--VPKSDFYSYELKYSSL-NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               V  S+FY+Y+ KY     +  V+PA I  +I  +++ +A  A+Q +GC G++R D 
Sbjct: 244 CGEIVLNSEFYAYDTKYIDDQGAQVVVPAAIAPEINDKIRAIAVQAYQTLGCSGMARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                  +V   EIN  PG T +S++P++   +G  +  L+  ++E A
Sbjct: 304 FLTA-DNEVVINEINTLPGFTNISMYPKLWQASGLDYTSLITRLIELA 350


>gi|120603688|ref|YP_968088.1| D-alanine--D-alanine ligase [Desulfovibrio vulgaris DP4]
 gi|166198484|sp|A1VGU5|DDL_DESVV RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|120563917|gb|ABM29661.1| D-alanine--D-alanine ligase [Desulfovibrio vulgaris DP4]
          Length = 303

 Score =  326 bits (836), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 102/294 (34%), Positives = 158/294 (53%), Gaps = 5/294 (1%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-AHLKPDLAFNVLHGN 61
           ++ GG SSER+VSL+  +    AL   G  V+  D   S+  +L A    D AF  LHG+
Sbjct: 5   LIAGGWSSERDVSLAGARGIEKALRALGHDVTWFDPATSLDGLLEAASSHDFAFINLHGS 64

Query: 62  FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-ILVNRFTMDS 120
            GEDGLVQA+L+    PY  SG   S L+++K  SKQ++   G+       L  R   D 
Sbjct: 65  PGEDGLVQAMLDTAGCPYQGSGPAGSFLALNKAVSKQLLRRHGILTPDWAFLAARPAADW 124

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  +  P  +KP  GGSSL +  + + + +   L   + + H  + ++E  + G+E+TCG
Sbjct: 125 EPGLGYPLFVKPNTGGSSLCLSRVTQPEGLAPAL--EAVFAHCGEAIVEPAIPGVEVTCG 182

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V+GD +L    I   +  F+ Y  KY+   +T + PA +P ++   VQ +   AH+ +G 
Sbjct: 183 VLGDTALPPILIRPAEGAFFDYTSKYTPGGATELCPAPLPAEVTAHVQDVTLRAHRLLGL 242

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           RG SR+D++       +F LE+N  PGMTP S+ P+ AA  G  F  L+  ++E
Sbjct: 243 RGYSRADYILR-DDGALFLLEVNTLPGMTPTSLVPQEAAAIGLDFPALIARLIE 295


>gi|239994433|ref|ZP_04714957.1| D-alanine--D-alanine ligase [Alteromonas macleodii ATCC 27126]
          Length = 327

 Score =  325 bits (835), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 101/302 (33%), Positives = 160/302 (52%), Gaps = 10/302 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SG A  +AL   G      D        L  L  D A  +LHG
Sbjct: 22  VAVLLGGDSAEREVSLNSGNAVLNALLRQGVDAFAFDPAERPLTDLIDLNVDRALIMLHG 81

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q  L+ L+IPYT S +L SAL+MDK+ +KQV  S G+P     + ++   ++
Sbjct: 82  RGGEDGSMQGALQFLKIPYTGSRVLGSALAMDKIHTKQVWQSLGLPTAKYEIADKRHFEA 141

Query: 121 ------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
                    +    ++KP + GSS+G+  +   + +   +    ++ + +Q+L+EQY+DG
Sbjct: 142 GKCSAIMDKLGNEVMVKPAREGSSIGMARVTSAKQLETAIQD--AFKYDNQVLLEQYIDG 199

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
            E T  V+   +L    ++ P + FY Y  KY    + +  P+ +  +   ++ +LA  A
Sbjct: 200 PEFTVSVLQGQALPSIRMSTPHT-FYDYAAKYQDNTTEYYCPSGLSEEQEAQLAKLASRA 258

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             AI   G  R D + D   R+ + LE N  PGMT  S+ P+ A  AG +F EL+L ++ 
Sbjct: 259 FDAISGSGWGRIDVMQDNQ-RQFYLLEANTVPGMTEKSLVPKAAKVAGLTFDELVLSILS 317

Query: 295 DA 296
            +
Sbjct: 318 TS 319


>gi|288936910|ref|YP_003440969.1| D-alanine/D-alanine ligase [Klebsiella variicola At-22]
 gi|288891619|gb|ADC59937.1| D-alanine/D-alanine ligase [Klebsiella variicola At-22]
          Length = 365

 Score =  325 bits (835), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 91/348 (26%), Positives = 162/348 (46%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP- 51
           + ++ GG S+E EVSL S K    A++ + F V  + +D+            +L    P 
Sbjct: 6   VGIVFGGKSAEHEVSLQSAKNIVEAIDKSRFDVVLLGIDKQGLWHINDAGNYLLNAQDPA 65

Query: 52  ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
                                             D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  RIALRPSTVTLAQIPGREAQQLINADSGQPLAAIDVIFPIVHGTLGEDGSLQGMLRMANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLISPPYVIK 131
           P+  S +L SA  MDK  +K+++   G+ V P I + R         D +  +  P  +K
Sbjct: 126 PFVGSDVLGSAACMDKDVTKRLLRDAGLAVAPFITLTRANRAQFSFADVEAKLGLPLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+GI  +K ++     +  +  ++H  ++++EQ + G E+ C V+G+     + 
Sbjct: 186 PANQGSSVGISKVKNEEQYHQAVALAFEFDH--KVVVEQGIKGREIECAVLGNDHPQAST 243

Query: 192 IA--VPKSDFYSYELKYSSL-NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               V  S+FY+Y+ KY     +  V+PA I  +I  +++ +A  A+Q +GC G++R D 
Sbjct: 244 CGEIVLNSEFYAYDTKYIDDQGAQVVVPAAIAPEINDKIRAIAVQAYQTLGCSGMARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                  +V   EIN  PG T +S++P++   +G  +  L+  ++E A
Sbjct: 304 FLTA-DNEVVINEINTLPGFTNISMYPKLWQASGLDYTSLITRLIELA 350


>gi|51891650|ref|YP_074341.1| D-alanine--D-alanine ligase [Symbiobacterium thermophilum IAM
           14863]
 gi|51855339|dbj|BAD39497.1| D-alanine--D-alanine ligase [Symbiobacterium thermophilum IAM
           14863]
          Length = 366

 Score =  325 bits (835), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 94/348 (27%), Positives = 167/348 (47%), Gaps = 54/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           + +L GG S E EVSL S +    AL+ + ++V  + + +    +               
Sbjct: 7   VYLLFGGRSGEHEVSLMSARNVLEALDRSKYEVIPVGITKEGRWLQVGDPLRALTEGVAA 66

Query: 46  --------------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPY 79
                                      AH  P + F VLHG +GEDG +Q +LE+  +PY
Sbjct: 67  AGGRPVGLLGDPSYSGPVPLSDGLRPAAHDGPVVFFPVLHGTYGEDGTIQGLLEMANVPY 126

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVI 130
              G+LAS+++MDK  +K +    G+ V P  +  R            D    +  P  +
Sbjct: 127 VGCGVLASSVAMDKGVAKALFRQAGLEVGPYRVYLRRDWERHPEQIRADVSAHLRYPVFV 186

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--D 188
           KP   GSS+GI  +K+ + +   + +++ ++   ++++EQ +D  E+   V+G+      
Sbjct: 187 KPANLGSSVGITKVKRPEDLDRAMDEAARFDR--RIIVEQGIDAREIEVAVLGNDDPIAS 244

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           V    +P ++FY Y  KY S  S   +PA +P D+ +E +R A +A +AI   G++R DF
Sbjct: 245 VPGEILPGAEFYDYTDKYFSGASQTRIPADLPDDLVEEFRRQAVVAFKAIDGSGMARVDF 304

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             +  + ++F  E+N  PG T +S++P++   +G  + ELL  +++ A
Sbjct: 305 FLERGTNRIFINEVNTIPGFTNISMYPKLWEASGIGYGELLDRLIQLA 352


>gi|319639048|ref|ZP_07993805.1| D-alanine-D-alanine ligase [Neisseria mucosa C102]
 gi|317399626|gb|EFV80290.1| D-alanine-D-alanine ligase [Neisseria mucosa C102]
          Length = 304

 Score =  325 bits (835), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 108/299 (36%), Positives = 161/299 (53%), Gaps = 7/299 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSEREVSL SG A  +AL+  G      D   +    L       AFN+LHG
Sbjct: 7   VAVLMGGFSSEREVSLDSGAAILAALKSKGVDAHAFDPKETPLSELKTQGFQTAFNILHG 66

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-ILVNRFTMD 119
            FGEDG +Q  LEL+ IPYT SG+ ASAL MDK R K +  + G+PV    +L +    D
Sbjct: 67  TFGEDGAIQGALELMGIPYTGSGVAASALGMDKYRCKLIWQAVGLPVPEFAVLHDDSDFD 126

Query: 120 S-QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           + +  +  P  +KP   GSS+G++ +K+   +    +     +   +++ E+++ G E +
Sbjct: 127 AVEEKLGLPMFVKPAAEGSSVGVVKVKEKGRLKS--VYEELKHLQGEIIAERFIGGGEYS 184

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQA 237
           C V+    L    I +P ++FY YE KY+  ++ +  P   +       ++ LA    QA
Sbjct: 185 CPVLNGKGLPSIHI-IPATEFYDYEAKYNRDDTVYQCPSEDLSEAEENLMRELAVRGAQA 243

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           IG  G SR DF       K++ LEIN  PGMT  S+ P+ AA+ G  F +L + +++ A
Sbjct: 244 IGADGCSRVDF-LKDTDGKLYLLEINTLPGMTSHSLVPKSAAHTGVDFADLCIEILKTA 301


>gi|162148963|ref|YP_001603424.1| UDP-N-acetylenolpyruvoylglucosamine reductase [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|161787540|emb|CAP57136.1| UDP-N-acetylenolpyruvoylglucosamine reductase [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 645

 Score =  325 bits (835), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 126/310 (40%), Positives = 185/310 (59%), Gaps = 13/310 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL---KPDLAFNV 57
           + VL GG+S+ER VSLSSG   ++AL + GF V  +D    +G ++A L   +PD+ FN 
Sbjct: 337 ITVLTGGLSAERTVSLSSGAGISAALREEGFDVRVLDAGPDLGAIVADLTAHRPDVVFNA 396

Query: 58  LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117
           LHG FGEDG +Q +L+ + IPYTHSG+ ASA++MDK  ++    + G+PV    ++    
Sbjct: 397 LHGRFGEDGSIQGVLDWMNIPYTHSGVRASAMAMDKAAARSAFRAAGLPVAQGGVIAIAD 456

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
             +   +  PYVIKPL  GSS+G+ +++   +    +  + +W +G   L+E+++ G EL
Sbjct: 457 FPAADPLPAPYVIKPLNEGSSVGVEIVRPGTNRRAAI--ADAWTYGPLALVEEFIPGREL 514

Query: 178 TCGVMGDASLDVTEIAV---PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
           T GVMGD +L VT+I        +FY Y  KY +  S H+LPA+I  D + +   LA  A
Sbjct: 515 TVGVMGDRALTVTDITPNPDAGHEFYDYAAKYQNGGSRHILPARIHPDAFAQALDLAVAA 574

Query: 235 HQAIGCRGISRSDFLFDPLS-----RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           H+A+GC G SR+DF +D         ++  LE+N QPGMTP S+ PE A   G  +  L 
Sbjct: 575 HRALGCAGASRTDFRYDDTQCGDGPGRLVILEVNTQPGMTPTSLLPEQAGACGIPYGALC 634

Query: 290 LWMVEDASCL 299
            WMVE A+C 
Sbjct: 635 RWMVEHAACR 644


>gi|152968896|ref|YP_001334005.1| D-alanylalanine synthetase [Klebsiella pneumoniae subsp. pneumoniae
           MGH 78578]
 gi|262042385|ref|ZP_06015547.1| D-alanine-D-alanine ligase A [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|330006858|ref|ZP_08305734.1| D-ala D-ala ligase protein [Klebsiella sp. MS 92-3]
 gi|150953745|gb|ABR75775.1| D-alanylalanine synthetase [Klebsiella pneumoniae subsp. pneumoniae
           MGH 78578]
 gi|259040293|gb|EEW41402.1| D-alanine-D-alanine ligase A [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|328535701|gb|EGF62146.1| D-ala D-ala ligase protein [Klebsiella sp. MS 92-3]
          Length = 376

 Score =  325 bits (835), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 90/348 (25%), Positives = 162/348 (46%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP- 51
           + ++ GG S+E EVSL S K    A++ + F V  + +D+            +L    P 
Sbjct: 17  VGIVFGGKSAEHEVSLQSAKNIVEAIDKSRFDVVLLGIDKQGLWHINDAGNYLLNAQDPA 76

Query: 52  ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
                                             D+ F ++HG  GEDG +Q +L +  +
Sbjct: 77  RIALRPSTVTLAQIPGREAQQLINAESGQPLAAIDVIFPIVHGTLGEDGSLQGMLRMANL 136

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLISPPYVIK 131
           P+  S +L SA  MDK  +K+++   G+ V P I + R         D +  +  P  +K
Sbjct: 137 PFVGSDVLGSAACMDKDVTKRLLRDAGLAVAPFITLTRANRAQFSFADVEAKLGLPLFVK 196

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  +K ++     +  +  ++H  ++++EQ + G E+ C V+G+     + 
Sbjct: 197 PANQGSSVGVSKVKNEEQYHQAVALAFEFDH--KVVVEQGIKGREIECAVLGNDHPQAST 254

Query: 192 IA--VPKSDFYSYELKYSSL-NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               V  S+FY+Y+ KY     +  V+PA I  +I  +++ +A  A+Q +GC G++R D 
Sbjct: 255 CGEIVLNSEFYAYDTKYIDDQGAQVVVPAAIAPEINDKIRAIAVQAYQTLGCSGMARVDV 314

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                  +V   EIN  PG T +S++P++   +G  +  L+  ++E A
Sbjct: 315 FLTA-DNEVVINEINTLPGFTNISMYPKLWQASGLDYTSLITRLIELA 361


>gi|269468110|gb|EEZ79820.1| D-alanine-D-alanine ligase [uncultured SUP05 cluster bacterium]
          Length = 292

 Score =  325 bits (835), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 103/295 (34%), Positives = 154/295 (52%), Gaps = 4/295 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG S+EREVSL SG+A   AL+    K  + D +      L   K D AF VLHG
Sbjct: 2   IAVLMGGNSAEREVSLESGEAVYIALKTQNIKCFKFDWNGDNLADLWSKKFDQAFIVLHG 61

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q  LE   I YT S   +S   M+K  +K +     +P+ PS++ N      
Sbjct: 62  RGGEDGFIQKKLEDRNITYTGSDSRSSKNCMNKTTTKTIWKENDLPLAPSVVSNANEPIP 121

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
                 P+ +KP   GSS+GI  +     +   L    +W +    LIE++++G E T  
Sbjct: 122 SITFPLPWAVKPTLEGSSIGISKVTDQSQLNEALAL--AWKYDQNALIERWIEGDEYTVS 179

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           ++ + +L   +I V +  FY Y+ KY S ++ ++ P  +P    K +Q +A  A +A+  
Sbjct: 180 ILNNKALPAIKIIVNR-GFYDYKSKYHSDDTQYLCPCGLPETDEKHLQSIALRAFKAMNA 238

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
               R DF+ D  ++K++ LEIN  PGMT  S+ P  A   G SF EL+L ++ D
Sbjct: 239 SNWGRVDFIIDK-NQKIYLLEINTVPGMTSHSLVPMAAKAEGISFDELVLNILND 292


>gi|325915633|ref|ZP_08177941.1| D-alanine--D-alanine ligase [Xanthomonas vesicatoria ATCC 35937]
 gi|325538193|gb|EGD09881.1| D-alanine--D-alanine ligase [Xanthomonas vesicatoria ATCC 35937]
          Length = 318

 Score =  325 bits (835), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 109/302 (36%), Positives = 162/302 (53%), Gaps = 11/302 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG SSEREVSL+SG     AL   G     +D   ++   L   + D  FNVLHG
Sbjct: 19  VAVLLGGTSSEREVSLNSGSNVLDALRARGVDAQPVDGIPALAQALVAGQFDRVFNVLHG 78

Query: 61  --NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
               GEDG+VQ ++E   IPYT S +L SALSMDK+R+KQV  S G+P      +     
Sbjct: 79  HNGGGEDGIVQGLMEAFGIPYTGSNVLGSALSMDKIRTKQVWLSLGLPTPRYARLAAGVS 138

Query: 119 DSQ-----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
             +       I  P ++KP   GSS+GI  +     +   +L ++   +   LL+EQ ++
Sbjct: 139 ADEIHAAARQIGLPVIVKPANEGSSVGISRVFDQAQLEEAVLLAA--RYDGALLMEQLIE 196

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           G ELT  ++G+ +L    I VPK  +Y Y  KY + ++ ++ P  +  D   ++ +LA  
Sbjct: 197 GDELTVAILGETALPSIRI-VPKGQWYDYNAKYLADDTQYLCP-GLDGDAEAQIGQLALD 254

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           A +A G R   R D + D  S +++ LE+N  PGMT  S+ P+ A   G  F EL+  ++
Sbjct: 255 AFRAAGARDWGRVDVMRDRSSGQLYLLEVNTAPGMTSHSLVPKAARQLGLDFEELVWRVL 314

Query: 294 ED 295
           E 
Sbjct: 315 EQ 316


>gi|262280494|ref|ZP_06058278.1| D-alanine-D-alanine ligase B [Acinetobacter calcoaceticus RUH2202]
 gi|262258272|gb|EEY77006.1| D-alanine-D-alanine ligase B [Acinetobacter calcoaceticus RUH2202]
          Length = 308

 Score =  325 bits (834), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 100/298 (33%), Positives = 153/298 (51%), Gaps = 8/298 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+ER VSL SG+A   AL  +G +    D        L  +  D AF VLHG
Sbjct: 10  VAVLFGGKSAERAVSLDSGQAVLDALLRSGVQAEAFDPQDRSVTEL--VNYDRAFIVLHG 67

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LE L +PYT +G+  SA+ MDK+++KQ+     +P  P  ++ + T   
Sbjct: 68  RGGEDGQIQGVLEWLNLPYTGTGVQGSAIGMDKVKTKQIWQGSDLPTAPYRIITKETDLD 127

Query: 121 Q--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                +  P +IKP+  GSS+G+  ++K +     + +++   H   ++ E+++ G E T
Sbjct: 128 AVIAELGLPVIIKPVHEGSSVGMSKVEKAEDFAAAIEKAT--QHDAVVMAEKWITGREFT 185

Query: 179 CGVMGDASLDVTEIAVP-KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
              +    L V  +  P    FY YE KY   +  + +P  +     K +Q L   A QA
Sbjct: 186 ISFLNGQPLPVIRLQPPADVAFYDYEAKYERNDVEYGIPCGLSETEEKNLQALCLRAFQA 245

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           +G  G  R D + D      + LE+N  PGMT  S+ P+ A   GYSF EL + ++E 
Sbjct: 246 VGAEGWGRIDAMQDEQGN-FWLLEVNTVPGMTSHSLVPKAAQAVGYSFDELCVAILEQ 302


>gi|241760206|ref|ZP_04758302.1| D-alanine--D-alanine ligase B [Neisseria flavescens SK114]
 gi|241319317|gb|EER55782.1| D-alanine--D-alanine ligase B [Neisseria flavescens SK114]
          Length = 304

 Score =  325 bits (834), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 105/299 (35%), Positives = 160/299 (53%), Gaps = 7/299 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSEREVSL SG A  +AL+  G      D   +    L       AFN+LHG
Sbjct: 7   VAVLMGGFSSEREVSLDSGAAILAALKSKGVDAHAFDPKETPLSELKTQGFQTAFNILHG 66

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--M 118
            FGEDG +Q  LEL+ IPYT SG+ ASAL MDK R K +  + G+PV   ++++  +   
Sbjct: 67  TFGEDGAIQGALELMGIPYTGSGVAASALGMDKYRCKLIWQAVGLPVPEFVVLHDDSDFD 126

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
             +  +  P  +KP   GSS+G++ +K+   +    +     +   +++ E+++ G E +
Sbjct: 127 AVEEKLGLPMFVKPASEGSSVGVVKVKEKGRLKS--VYEELKHLQGEIIAERFIGGGEYS 184

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQA 237
           C V+    L    I +P ++FY YE KY+  ++ +  P   +       ++ LA    QA
Sbjct: 185 CPVLNGKGLPSIHI-IPVTEFYDYEAKYNRDDTVYQCPSEDLSEAEENLMRELAVRGAQA 243

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           IG  G SR DF       K++ LEIN  PGMT  S+ P+ A + G  F +L + +++ A
Sbjct: 244 IGADGCSRVDF-LKDTDGKLYLLEINTLPGMTSHSLVPKSAGHTGVDFADLCIEILKTA 301


>gi|225181129|ref|ZP_03734575.1| D-alanine/D-alanine ligase [Dethiobacter alkaliphilus AHT 1]
 gi|225168098|gb|EEG76903.1| D-alanine/D-alanine ligase [Dethiobacter alkaliphilus AHT 1]
          Length = 353

 Score =  325 bits (834), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 101/333 (30%), Positives = 162/333 (48%), Gaps = 39/333 (11%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAG-FKVSQIDVDRSVGLVLAHLKP-------- 51
           +AVL GG S E EVSL S  +    L D G ++V  + + R     L  ++         
Sbjct: 6   IAVLHGGRSGEHEVSLRSAASIMDGLRDVGQYEVLPVFISREGIWTLEGVRVAILPEPGI 65

Query: 52  -----------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKM 94
                            D+ F VLHG +GEDG VQ +LEL  IPY  +G+  SA+ MDK+
Sbjct: 66  GGLYVLEGEKAGEVIPVDVVFPVLHGTYGEDGTVQGLLELARIPYVGAGVPGSAIGMDKI 125

Query: 95  RSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSLGIIVIK 145
             K  + + G+PV P +       +          +  ++ P  +KP   GSS+GI    
Sbjct: 126 LMKAGLLAAGLPVGPYLWFTVADWEENKKQLLKQIEEELAFPCFVKPANLGSSVGISKAY 185

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA--SLDVTEIAVPKSDFYSYE 203
               +   +  + +  +  ++L+E+ + G E+ C V+G+      V    +P +DFY Y 
Sbjct: 186 DSAQLEKAI--NEALQYDRRVLVEKMLTGCEIECSVLGNDRPEASVPGEIIPCNDFYDYS 243

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            KY   NS   +PAK+  +  K+V+ +A     A+ C G+ R DF  D  + +++ +EIN
Sbjct: 244 AKYLDDNSGLEIPAKLAPETIKKVREMAVQTFIALDCAGLGRVDFFVDEKTGEMWIIEIN 303

Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             PG T +S++P++   +G SF ELL  +V+ A
Sbjct: 304 TLPGFTSISMYPKLWEASGISFNELLQKLVKLA 336


>gi|149910629|ref|ZP_01899267.1| D-alanylalanine synthetase [Moritella sp. PE36]
 gi|149806357|gb|EDM66332.1| D-alanylalanine synthetase [Moritella sp. PE36]
          Length = 312

 Score =  325 bits (834), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 105/302 (34%), Positives = 160/302 (52%), Gaps = 10/302 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL SG A  + L  AG     +D        L       AF  LHG
Sbjct: 14  VAVLFGGHSAEREVSLKSGAAVTAGLLRAGVDAHALDTAEYDVHQLGRDGFTHAFIALHG 73

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118
             GEDG++Q  LE L IPYT S +L +AL+MDK+R+KQ+  S G+P     +V       
Sbjct: 74  RGGEDGVMQGALEQLGIPYTGSRVLGAALAMDKIRTKQIWQSQGLPTALYRVVTPINFNT 133

Query: 119 ----DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
               D    +  P +IKP K GSS+G+  +     +   +  ++++ + +++L+EQ+++G
Sbjct: 134 TIASDIIADLGSPVIIKPAKEGSSIGMAKVHNVAELETAV--TAAFAYDNEILVEQWIEG 191

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
            E T  ++GD  L V ++  P + FY Y+ KY S  + ++ PA I  +  +++Q  A  A
Sbjct: 192 PEFTVAILGDEVLPVIQLKTPNT-FYDYQAKYQSNTTEYLCPAPITDEQRQQLQAYALKA 250

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             A+   G  R D + D    +   LE+N  PGMT  S+ P  A  AGY+F  L+  ++ 
Sbjct: 251 FHAVAAEGWGRVDAMLDAQ-GQFQLLEVNTVPGMTEKSLVPMAANAAGYNFDSLVSKVLA 309

Query: 295 DA 296
            A
Sbjct: 310 LA 311


>gi|167854933|ref|ZP_02477708.1| D-alanine--D-alanine ligase [Haemophilus parasuis 29755]
 gi|219870393|ref|YP_002474768.1| D-alanine--D-alanine ligase [Haemophilus parasuis SH0165]
 gi|254767730|sp|B8F3B8|DDL_HAEPS RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|167853890|gb|EDS25129.1| D-alanine--D-alanine ligase [Haemophilus parasuis 29755]
 gi|219690597|gb|ACL31820.1| D-alanine--D-alanine ligase [Haemophilus parasuis SH0165]
          Length = 303

 Score =  325 bits (834), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 106/301 (35%), Positives = 165/301 (54%), Gaps = 9/301 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG+S+ERE+SL+SGK+   AL+  G+ V  ID        L        FN+LHG
Sbjct: 8   IAVLFGGVSAEREISLNSGKSVFEALQSLGYNVEAIDTKEFPIEKLKEKGIQRVFNILHG 67

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118
             GE+G++Q  LE L IPYT  G++ASA+++DK R+K + ++ G+P     +V R     
Sbjct: 68  GIGENGVLQGALEQLGIPYTGCGVMASAITLDKFRTKLLWNAVGLPTAAMEVVRRGQAVN 127

Query: 119 --DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
             +    +  P  +KP   GSS+G+  +K  + +   +    +  +   +L+E+ + G E
Sbjct: 128 SDEIIAKLGLPLFVKPASEGSSVGVSKVKTAEQLLPAI--EEALKYDSIVLVEENLAGAE 185

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
            +  V+    L   +I +P  +FY Y  KY S N+ +V+PA +  D   EV +L   A+ 
Sbjct: 186 YSVPVLDGEVLPAVQI-IPDGEFYDYHAKYISDNTQYVVPA-LNADRQAEVAKLVKQAYD 243

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            +GCRG SR D + D        +E+N  PGMT  SIFP+ AA  GYSF  L+  ++E +
Sbjct: 244 VVGCRGWSRIDVMEDGEGN-FRLVEVNTCPGMTSHSIFPKSAATVGYSFERLVERVLELS 302

Query: 297 S 297
           +
Sbjct: 303 A 303


>gi|298369633|ref|ZP_06980950.1| D-alanine--D-alanine ligase B [Neisseria sp. oral taxon 014 str.
           F0314]
 gi|298282190|gb|EFI23678.1| D-alanine--D-alanine ligase B [Neisseria sp. oral taxon 014 str.
           F0314]
          Length = 303

 Score =  325 bits (834), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 107/298 (35%), Positives = 161/298 (54%), Gaps = 6/298 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSER VSL SG A  +AL+  G      D   +    L       AFN+LHG
Sbjct: 7   VAVLMGGFSSERNVSLDSGAAIVAALKGRGVDAHAFDPKETPLADLKTQGFQTAFNILHG 66

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--M 118
            +GEDG+VQ  LEL  IPYT SG+ ASA+ MDK R K +  + G+PV    ++   T   
Sbjct: 67  TYGEDGVVQGTLELFGIPYTGSGVAASAIGMDKYRCKLIWQALGLPVPEFAVLREDTDFE 126

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
             +  +  P  +KP   GSS+G++ +K  +   L  + +   +   +++ E+++ G E +
Sbjct: 127 AVEKRLGLPMFVKPANEGSSVGVVKVK--EKGRLKDVYAELKHMKGEIIAERFIGGGEYS 184

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           C V+G   L    I VP ++FY YE KY+  ++ +  P+ +     + ++ LA    +AI
Sbjct: 185 CPVLGGRGLPSILI-VPATEFYDYEAKYNRDDTVYRCPSDLNAADEELMRELAVRGAEAI 243

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           G  G  R DF    L  K++ LEIN  PGMT  S+ P+ AA  G  F +L + +++ A
Sbjct: 244 GAEGCVRVDF-LKDLDGKLYLLEINTLPGMTSHSLVPKSAAQIGMDFPDLCIEILKTA 300


>gi|296101501|ref|YP_003611647.1| D-alanyl-alanine synthetase A [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295055960|gb|ADF60698.1| D-alanyl-alanine synthetase A [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
          Length = 366

 Score =  325 bits (834), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 92/348 (26%), Positives = 160/348 (45%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           + ++ GG S+E EVSL S K    A++   F V  + +D+     +              
Sbjct: 6   VGIVFGGKSAEHEVSLQSAKNIVDAIDKNRFDVVLLGIDKQGQWHVNDASQYLLNANDPA 65

Query: 47  -----------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEI 77
                                        A  + D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  HIALNPSEISVATVPGVVKGQLIDAGNAQALAQIDVVFPIVHGTLGEDGSLQGMLRMANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVIK 131
           P+  S +L SA  MDK  +K+++   G+ V P + + R   D          +  P  +K
Sbjct: 126 PFVGSDVLGSAACMDKDVTKRLLRDAGLNVAPFVTLTRANRDKYNFSQISAQLGLPLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  +  +      +  +  ++H  ++++EQ + G E+ C V+G+     + 
Sbjct: 186 PANQGSSVGVSKVTSEAQFTEAVRLAFEFDH--KVVVEQGIKGREIECAVLGNDFPQAST 243

Query: 192 I--AVPKSDFYSYELKYSSL-NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               V  SDFYSY+ KY     +  V+PA I   I  +++ +A  A+QA+GC G++R D 
Sbjct: 244 CGEVVLNSDFYSYDTKYIDDKGAQVVVPANIDPAINDKIRAIAINAYQALGCCGMARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              P   +V   EIN  PG T +S++P++   +G  + EL+  ++E A
Sbjct: 304 FLTP-DNEVVINEINTLPGFTNISMYPKLWQASGLGYSELITRLIELA 350


>gi|282899830|ref|ZP_06307792.1| D-alanine--D-alanine ligase [Cylindrospermopsis raciborskii CS-505]
 gi|281195312|gb|EFA70247.1| D-alanine--D-alanine ligase [Cylindrospermopsis raciborskii CS-505]
          Length = 357

 Score =  325 bits (834), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 89/342 (26%), Positives = 158/342 (46%), Gaps = 48/342 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASAL----EDAGFKVSQIDVDRSVGLVLAHL------- 49
           + +L GG S E EVS+ S  A A AL        ++V    + ++       +       
Sbjct: 6   VGLLFGGRSGEHEVSIVSAGAIAKALTTGENSQKYEVCPFYIQKNGVWQGEEIARKVLES 65

Query: 50  ---------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
                                + DL F +LHG  GEDG +Q +L L+++P+  SG+L SA
Sbjct: 66  GSAEENTPNTVNLWQFPQKSPQIDLWFPILHGPNGEDGTIQGLLTLMQVPFVGSGVLGSA 125

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------------QHLISPPYVIKPLKGG 136
           + MDK+  K   +  G+P      V R  + S            +  +  P  +KP   G
Sbjct: 126 MGMDKIAMKTAFAQAGLPQVQYQTVTRAQIWSNPCVFPKLCDQIETTLGYPCFVKPANLG 185

Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP- 195
           SS+GI  ++  Q +   L  ++   +  ++++E  V   E+ C V+G+     + +    
Sbjct: 186 SSVGIAKVRSRQELETALDNAA--TYDRRIIVEAGVVAREVECAVLGNDHPQASVVGEIS 243

Query: 196 -KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
             SDFY YE KY+   +  ++PA +   + +++Q ++  A  A+   G++R DF +   +
Sbjct: 244 FNSDFYDYETKYTQGKADLLIPAPLSQTVVEQIQEMSLKAFAAVDAAGLARVDFFYVEST 303

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            ++   EIN  PG T  S++P++ A  G SF +L+  +++ A
Sbjct: 304 GEILINEINTLPGFTSTSMYPQLWANTGISFPQLVDQLIQLA 345


>gi|149927134|ref|ZP_01915391.1| D-alanine--D-alanine ligase [Limnobacter sp. MED105]
 gi|149824073|gb|EDM83294.1| D-alanine--D-alanine ligase [Limnobacter sp. MED105]
          Length = 323

 Score =  325 bits (834), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 106/302 (35%), Positives = 154/302 (50%), Gaps = 10/302 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VL GG S+EREVSL SG    +AL+  G      D      + LA  + D A   LHG
Sbjct: 13  VVVLFGGRSAEREVSLKSGSMVLAALKRNGVDAHGFDPAERSMVELAQGEFDRAVISLHG 72

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG +Q +LE L IPYT SG+ ASAL+MDK+ +K    S G+     + +      S
Sbjct: 73  RFGEDGTIQGVLEWLNIPYTGSGVTASALAMDKILTKAAWISQGLATPDYVRLEPGFNVS 132

Query: 121 Q--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           +    +  P ++KP + GS+LG+  +K    +        ++ +   +L E++V G ELT
Sbjct: 133 EVVQRLGLPLIVKPAQEGSTLGLTKVKTVDQLQAAFDL--AYKYDPNVLAEKFVSGQELT 190

Query: 179 CGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
             VMG+     +L V  I  P  + Y Y  KY    + +  P+ +  D   EVQ L   A
Sbjct: 191 VPVMGEGAGAHALPVIRIQAPDGN-YDYHNKYIGNETKYFCPSGLNSDFEAEVQALCVKA 249

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           +Q +GC G  R+D L D    K + LE+N  PGMT  S+ P  A  +G  + +L+L +  
Sbjct: 250 YQVLGCAGWGRADVLVDES-GKPWLLEMNTSPGMTDHSLVPMSARASGVEYDDLVLQIAA 308

Query: 295 DA 296
            A
Sbjct: 309 SA 310


>gi|295677760|ref|YP_003606284.1| D-alanine/D-alanine ligase [Burkholderia sp. CCGE1002]
 gi|295437603|gb|ADG16773.1| D-alanine/D-alanine ligase [Burkholderia sp. CCGE1002]
          Length = 313

 Score =  325 bits (834), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 100/296 (33%), Positives = 155/296 (52%), Gaps = 11/296 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SG+     L DAG      D        L       AFN LHG
Sbjct: 12  VAVLLGGNSAEREVSLNSGRLVLQGLRDAGVDAHPFDPAERPLSALKDEGFVRAFNALHG 71

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118
            +GE+G +Q  L+   I YT SG+L SAL +DK R+K V    G+P  P   V R     
Sbjct: 72  GYGENGQIQGALDFYGIRYTGSGVLGSALGLDKFRTKLVWQQLGIPTPPFEAVLRGDDYE 131

Query: 119 ----DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD- 173
               +    +  P  +KP   GSS+ +I +K   ++P  L+++    +   +++E+ ++ 
Sbjct: 132 ARAKEIVAKLGLPLFVKPASEGSSVAVIKVKSADALPAALIEAV--KYDRIVVVEKSIEG 189

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           G E T  + G+  L V  I VP  +FY Y  KY + ++ +++P  +  +    ++ LA  
Sbjct: 190 GGEYTACIAGNLDLPVIRI-VPAGEFYDYHAKYIANDTQYLIPCGLGAEEEARLKVLARR 248

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           A   +GC    R+DF+ D    K ++LE+N  PGMT  S+ P+ A   G S++EL+
Sbjct: 249 AFDVLGCTDWGRADFMLDG-DGKPYFLEVNTAPGMTDHSLPPKAARAVGISYQELV 303


>gi|169794350|ref|YP_001712143.1| D-alanine--D-alanine ligase [Acinetobacter baumannii AYE]
 gi|213159075|ref|YP_002321073.1| D-alanine--D-alanine ligase B [Acinetobacter baumannii AB0057]
 gi|215481906|ref|YP_002324088.1| D-alanine--D-alanine ligase B [Acinetobacter baumannii AB307-0294]
 gi|301344639|ref|ZP_07225380.1| D-alanine--D-alanine ligase [Acinetobacter baumannii AB056]
 gi|332850156|ref|ZP_08432543.1| D-ala D-ala ligase protein [Acinetobacter baumannii 6013150]
 gi|332868968|ref|ZP_08438527.1| D-ala D-ala ligase protein [Acinetobacter baumannii 6013113]
 gi|226723896|sp|B7GV75|DDL_ACIB3 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|226723897|sp|B7ICE3|DDL_ACIB5 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|229485851|sp|B0V9F7|DDL_ACIBY RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|169147277|emb|CAM85136.1| D-alanine-D-alanine ligase B [Acinetobacter baumannii AYE]
 gi|213058235|gb|ACJ43137.1| D-alanine--D-alanine ligase B [Acinetobacter baumannii AB0057]
 gi|213987599|gb|ACJ57898.1| D-alanine--D-alanine ligase B [Acinetobacter baumannii AB307-0294]
 gi|332731005|gb|EGJ62311.1| D-ala D-ala ligase protein [Acinetobacter baumannii 6013150]
 gi|332733011|gb|EGJ64213.1| D-ala D-ala ligase protein [Acinetobacter baumannii 6013113]
          Length = 308

 Score =  325 bits (834), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 100/298 (33%), Positives = 155/298 (52%), Gaps = 8/298 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+ER VSL SG+A   AL  +G +    D        L  +  D AF VLHG
Sbjct: 10  VAVLLGGKSAERAVSLDSGQAVLDALLRSGVQAEAFDPQNRSVTEL--VNYDRAFIVLHG 67

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LE L IPYT +G+  SA+ MDK+++KQ+     +P  P  ++ + T   
Sbjct: 68  RGGEDGQIQGVLEWLNIPYTGTGVQGSAIGMDKVKTKQIWQGSDLPTAPYRIITKETDLD 127

Query: 121 Q--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                +  P +IKP+  GSS+G+  ++K +     + +++   H   ++ E+++ G E T
Sbjct: 128 SVIAELGLPVIIKPVHEGSSVGMSKVEKAEDFAAAIEKAT--QHDAVVMAEKWITGREFT 185

Query: 179 CGVMGDASLDVTEIAVP-KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
              +    L V  +  P    FY YE KY   +  + +P  +     K++Q L   A QA
Sbjct: 186 ISFLNGQPLPVIRLQPPADVAFYDYEAKYQRNDVEYGIPCGLSETEEKKLQALCLRAFQA 245

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           +G  G  R D + D      + LE+N  PGMT  S+ P+ A   GYSF EL + +++ 
Sbjct: 246 VGAEGWGRIDAMQDEQGN-FWLLEVNTVPGMTSHSLVPKAAKAVGYSFDELCVAILDQ 302


>gi|148657890|ref|YP_001278095.1| D-alanine--D-alanine ligase [Roseiflexus sp. RS-1]
 gi|148570000|gb|ABQ92145.1| D-alanine--D-alanine ligase [Roseiflexus sp. RS-1]
          Length = 370

 Score =  325 bits (833), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 98/357 (27%), Positives = 165/357 (46%), Gaps = 63/357 (17%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           + VL GG S E EVSL S +A    L+   + +  I + +    ++A             
Sbjct: 7   VGVLFGGQSGEHEVSLVSARAIMDGLDPEKYDIIPIGITKQGRWIIAADAHARLLVQADP 66

Query: 52  -----------------------------------------DLAFNVLHGNFGEDGLVQA 70
                                                    D+ F VLHG  GEDG VQ 
Sbjct: 67  SKLPGGSISATTTASAGVGDQETTDPGTLIVAGEYSPLKTLDVIFPVLHGPMGEDGTVQG 126

Query: 71  ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH-------- 122
           +LEL+ +PY   G+LASA+ MDK  +K   S  G+PV P +LV R   + +         
Sbjct: 127 LLELIGVPYVGCGVLASAVGMDKAMTKVAFSGAGLPVLPWLLVRRREWEHEPQRVLDWIE 186

Query: 123 -LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
             +  P  +KP   GSS+G+  +    ++   + +++S++   ++++EQ +   E+   V
Sbjct: 187 SRLHYPMFVKPANLGSSVGVSKVTDRATLEQGIAEAASYDR--RIIVEQGIPAREIEVSV 244

Query: 182 MGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
           +G+   + +     +P  ++Y Y  KY S +S  ++PA I L++  +V+ LA  A +AI 
Sbjct: 245 LGNDEPEASVPGEVIPSGEWYDYAAKYLSGSSQILIPAPITLELAAQVRTLAVQAFKAID 304

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             G++R DFL +  +  ++  EIN  PG TPVS++  M   +G  +  LL  +++ A
Sbjct: 305 GAGLARVDFLLNRETGDLYLNEINTMPGFTPVSMYAMMWDASGLPYTHLLDRLIDLA 361


>gi|78484930|ref|YP_390855.1| D-alanine--D-alanine ligase [Thiomicrospira crunogena XCL-2]
 gi|123555841|sp|Q31I42|DDL_THICR RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|78363216|gb|ABB41181.1| D-alanine--D-alanine ligase [Thiomicrospira crunogena XCL-2]
          Length = 313

 Score =  325 bits (833), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 103/295 (34%), Positives = 162/295 (54%), Gaps = 6/295 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG+++ER+VSL SG     AL+  G      DV     LV    K D AF  LHG
Sbjct: 18  VAVLMGGVAAERDVSLRSGAEVLKALKSEGVDAVGCDVTSVAQLVEIAQKYDRAFIALHG 77

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT-MD 119
            +GEDG VQA+L+ L +PYT SG+ ASAL+MDK+R+K +    G+P    I+V+    +D
Sbjct: 78  RWGEDGGVQAVLDSLALPYTGSGMTASALAMDKLRTKWLWKGVGLPTPAFIVVSPSRPLD 137

Query: 120 SQHL-ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   ++ P ++KP   GSS+G+  +    ++   +    +  +  ++LIEQ++ G E T
Sbjct: 138 VETFDLTFPVIVKPSHEGSSIGMRKVDTLDALQEAV--DFAQQYDSEILIEQWITGREFT 195

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           C V+   +L + ++     DFY ++ KY S  + ++ P  + +   K +Q L   A  A+
Sbjct: 196 CAVLDGEALPMIQLKTDH-DFYDFDAKYQSNTTEYLCPCGLEIAEEKRIQALVLQAFDAV 254

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           G R   R D + D    + + +EIN  PGMT  S+ P  A     SF +L+L ++
Sbjct: 255 GARHWGRVDLMLDDQ-NQPWLIEINTVPGMTDHSLVPMAAKAVDLSFSKLVLKLI 308


>gi|322833759|ref|YP_004213786.1| D-alanine/D-alanine ligase [Rahnella sp. Y9602]
 gi|321168960|gb|ADW74659.1| D-alanine/D-alanine ligase [Rahnella sp. Y9602]
          Length = 365

 Score =  325 bits (833), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 90/348 (25%), Positives = 161/348 (46%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           + ++ GG S+E EVSL S K    A++   F V+ + +D+     +              
Sbjct: 6   VGIIFGGKSAEHEVSLQSAKNIVDAIDKQRFDVTLLGIDKKGEWHINDASNYLINAENPS 65

Query: 50  --------------------------------KPDLAFNVLHGNFGEDGLVQAILELLEI 77
                                           + D+ F ++HG  GEDG +Q +L +  I
Sbjct: 66  LIALNRSNNQVALIPGQTENQLIETHSASALSQVDVIFPIVHGTLGEDGSLQGLLRMANI 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ------HLISPPYVIK 131
            +  SG+L SA+SMDK  +K+++   G+ V P + + R              +  P  IK
Sbjct: 126 AFVGSGVLGSAVSMDKDVTKRLLRDAGLAVAPFVCLTRANRQKNTFASVSQQLGLPLFIK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  +  +      L ++ S++H  ++L+E  + G E+ C V+G+     + 
Sbjct: 186 PANQGSSVGVSKVSDEDGYQRALDKAFSFDH--KVLVESAIKGREIECAVLGNDHPQASV 243

Query: 192 I--AVPKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               +   +FYSY+ KY + +   + +PA +P + +  ++ +A  A Q + CRG++R D 
Sbjct: 244 CGEVILHDEFYSYDTKYINESGASIAVPADLPRETHDRIRAIALQAFQVLECRGMARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                   V   EIN  PG T +S++P++ A +G S+ EL+  ++E A
Sbjct: 304 FLTEQ-GDVVINEINTLPGFTNISMYPKLWAASGLSYSELITRLIELA 350


>gi|33593952|ref|NP_881596.1| D-alanine--D-alanine ligase [Bordetella pertussis Tohama I]
 gi|33603171|ref|NP_890731.1| D-alanine--D-alanine ligase [Bordetella bronchiseptica RB50]
 gi|39930855|sp|Q7VUQ5|DDL_BORPE RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|39930860|sp|Q7WFS4|DDL_BORBR RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|33564026|emb|CAE43292.1| D-alanine--D-alanine ligase B [Bordetella pertussis Tohama I]
 gi|33568802|emb|CAE34560.1| D-alanine--D-alanine ligase B [Bordetella bronchiseptica RB50]
 gi|332383370|gb|AEE68217.1| D-alanine--D-alanine ligase [Bordetella pertussis CS]
          Length = 316

 Score =  325 bits (833), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 111/305 (36%), Positives = 160/305 (52%), Gaps = 10/305 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VL GG S+EREVSL SGK    AL  AG      D        LA    +  F  LHG
Sbjct: 8   VGVLYGGRSAEREVSLMSGKGVHEALLSAGVDAHLFDTGERSLADLAAAGFERVFIALHG 67

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG +Q  LELL IPYT SG LAS+LSMDK+ +K+V    G+P     ++   T   
Sbjct: 68  RYGEDGTLQGALELLGIPYTGSGPLASSLSMDKIMTKRVWLQHGLPTPAFEVLGGSTELR 127

Query: 121 --QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                +  P ++KP   GS++GI  +     +      ++ +    ++L EQ++ G ELT
Sbjct: 128 LVPDRLGLPLILKPPHEGSTVGITKVAGYSDMKAAYELAARF--DAEVLAEQFITGRELT 185

Query: 179 CGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
             V+G      +L V EI  P    Y YE KY S ++ +  PA +P D+  +V  +A  A
Sbjct: 186 VAVLGSGAAARALPVIEIVAP-GGNYDYEHKYFSDDTQYFCPADLPADVAADVAAVAERA 244

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           + A+GC G  R DF+ D  +R  + LE+N  PGMT  S+ P  A   G S+ +L + ++ 
Sbjct: 245 YAALGCEGWGRVDFILDRENR-PWLLEMNTSPGMTGHSLVPMAARAVGMSYADLCVAILA 303

Query: 295 DASCL 299
           +A+C 
Sbjct: 304 EAACK 308


>gi|256827807|ref|YP_003151766.1| D-alanine--D-alanine ligase [Cryptobacterium curtum DSM 15641]
 gi|256583950|gb|ACU95084.1| D-alanine--D-alanine ligase [Cryptobacterium curtum DSM 15641]
          Length = 313

 Score =  325 bits (833), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 109/304 (35%), Positives = 168/304 (55%), Gaps = 11/304 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-DRSVGLVLAHLKPDLAFNVLH 59
           +A+L GG S ERE+SL+SG+  A AL+ AGF+V  +D   +     L     D+AF  LH
Sbjct: 10  VALLAGGTSDEREISLASGRGAADALQQAGFQVKVLDPAKKDDLAQLVSQPFDVAFLCLH 69

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G  GEDG +Q  LE + +PY   GI +SA +MDK+++K      G+P   SI ++R    
Sbjct: 70  GRGGEDGAIQGFLETIGLPYIGPGIWSSATAMDKVKAKVFYREFGIPTPQSITLHRNESV 129

Query: 120 SQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175
                   +    V+KP   GS+LG+ +I+   ++  D   + ++   + +LIE ++ G 
Sbjct: 130 DAATVIAQLGNHLVVKPATEGSALGVSIIEGPSAL--DRALTEAFKLDNAVLIETFMAGT 187

Query: 176 ELTCGVMGDA---SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
           ELT  V+G+    +L V EI     +FY +E KY++  S H+ PA++  +    VQ++A 
Sbjct: 188 ELTVAVIGNENASALPVIEIVPQLGEFYDFESKYAADGSQHICPARLTDEQTTAVQQVAV 247

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
            AH+A+GC G+SRSD +        + LE N  PGMT  S+ P+    AG SF +L   +
Sbjct: 248 QAHKALGCCGVSRSDVIL-AADGTPWVLETNTIPGMTATSLLPDAGRAAGMSFPQLCTRL 306

Query: 293 VEDA 296
           +E A
Sbjct: 307 IELA 310


>gi|67459427|ref|YP_247051.1| D-alanine--D-alanine ligase [Rickettsia felis URRWXCal2]
 gi|75536158|sp|Q4UKP1|DDL_RICFE RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|67004960|gb|AAY61886.1| D-alanine--D-alanine ligase [Rickettsia felis URRWXCal2]
          Length = 321

 Score =  325 bits (833), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 115/297 (38%), Positives = 189/297 (63%), Gaps = 3/297 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +A++ GG+S+EREVSL S +  + AL + G+KV+ ID+   + + L  +KPD+ FN LHG
Sbjct: 25  IALVAGGMSAEREVSLVSSEGVSKALIELGYKVTFIDMGADIAVKLQEIKPDIVFNCLHG 84

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG +  +L ++ IPYTHSG+L+SAL+ DK+ S+    +  + +  SI+VN+     
Sbjct: 85  TYGEDGCLPGLLNIMRIPYTHSGVLSSALAFDKIHSRSWFLTNNINMAESIIVNKSDNIK 144

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  PYVIKPL  GSS+G+ VI ++           ++ +G Q++IEQY+ G EL   
Sbjct: 145 SDPVKRPYVIKPLTQGSSIGVEVIFEEDDFNFA---DYNFPYGYQVIIEQYIKGRELQVA 201

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V+   +L   EI + K+ FY YE KY+   + H+ PA +P ++Y+++   +   ++ + C
Sbjct: 202 VLNGKALGALEIKLLKNRFYDYETKYTEGFAEHLCPAPLPTNLYEKLLVESEKIYKTMNC 261

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           +G +R++F+ +  + K++ LEIN  PGMTP+SI PE+AAYAG +F  L+  +++ AS
Sbjct: 262 KGPARAEFILEEQTNKLYALEINTHPGMTPLSIVPEIAAYAGINFTNLIEEIIKTAS 318


>gi|293397144|ref|ZP_06641418.1| D-alanine--D-alanine ligase [Serratia odorifera DSM 4582]
 gi|291420615|gb|EFE93870.1| D-alanine--D-alanine ligase [Serratia odorifera DSM 4582]
          Length = 368

 Score =  325 bits (833), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 91/348 (26%), Positives = 164/348 (47%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP- 51
           + V+ GG S+E EVSL S K    A++   F+V+ + +D+            +L    P 
Sbjct: 6   VGVIFGGKSAEHEVSLQSAKNIVDAIDKEKFEVTLLGIDKQGQWHINDASNYLLHAENPA 65

Query: 52  ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
                                             D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  LIALNHSNNNVALVPGQQSRQLIAADGAGALGQLDVVFPIVHGTLGEDGSLQGLLRMANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVIK 131
           P+  +G+L SA+SMDK  +K+++   G+ V P + + R   +          +  P  +K
Sbjct: 126 PFVGAGVLGSAVSMDKDVTKRLLRDAGLAVAPFVTLTRANRNKYDFAQLSERLGLPLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  ++  Q     +  + S++H  ++L+E  + G E+ C V+G+     + 
Sbjct: 186 PANQGSSVGVSRVQDRQQYEAAVALAFSFDH--KVLVESAIVGREIECAVLGNDQPQASV 243

Query: 192 IA--VPKSDFYSYELKYSSL-NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               V   +FYSY+ KY +   +  V+PA I      +++++A  A +A+ C G++R D 
Sbjct: 244 CGEIVLNDEFYSYDTKYINEQGAQVVVPAAISEAASDKIRQVALKAFRALDCLGMARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                   V   EIN  PG T +S++P++ A +G  +R+L+  ++E A
Sbjct: 304 FLTADDN-VIINEINTLPGFTNISMYPKLWAASGVDYRQLITRLIELA 350


>gi|282897252|ref|ZP_06305254.1| D-alanine--D-alanine ligase [Raphidiopsis brookii D9]
 gi|281197904|gb|EFA72798.1| D-alanine--D-alanine ligase [Raphidiopsis brookii D9]
          Length = 357

 Score =  325 bits (833), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 91/342 (26%), Positives = 158/342 (46%), Gaps = 48/342 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASAL----EDAGFKVSQIDVDRSVGLVLAHL------- 49
           + +L GG S E EVS+ S  A A AL        +++    + +        +       
Sbjct: 6   VGLLFGGRSGEHEVSIVSAGAIAKALTTGENSQKYELYPFYIQKDGVWQGEEIARKVLES 65

Query: 50  ---------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
                                + DL F +LHG  GEDG +Q +L L+++P+  SG+L SA
Sbjct: 66  GSAQENNLTGVNLWQFPQQSPQIDLWFPILHGPNGEDGTIQGLLTLMQVPFVGSGVLGSA 125

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------------QHLISPPYVIKPLKGG 136
           + MDK+  K   +  G+P      V R  + S            +  +  P  +KP   G
Sbjct: 126 MGMDKIAMKTAFAQAGLPQVQYQTVTRSQIWSNPCVFPKLCDQIETTLGYPCFVKPANLG 185

Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP- 195
           SS+GI  ++  Q +   L   S+  +  ++++E  V   E+ C V+G+     + +    
Sbjct: 186 SSVGIAKVRSRQQLETAL--DSAATYDRRIIVEAGVVAREVECAVLGNDHAQASVVGEIT 243

Query: 196 -KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
             SDFY YE KY+   +  ++PA +P  I +++Q ++  A  A+   G++R DF +   +
Sbjct: 244 FNSDFYDYETKYTQGKANLLIPAPLPQTIVEQIQEMSLKAFAAVDAAGLARVDFFYVEST 303

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            ++   EIN  PG T  S++P++ A  G SF +L+  +++ A
Sbjct: 304 GEILINEINTLPGFTSTSMYPQLWANTGISFPQLVDQLIQLA 345


>gi|331270461|ref|YP_004396953.1| D-alanine--D-alanine ligase [Clostridium botulinum BKT015925]
 gi|329127011|gb|AEB76956.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)
           [Clostridium botulinum BKT015925]
          Length = 343

 Score =  325 bits (833), Expect = 7e-87,   Method: Composition-based stats.
 Identities = 89/335 (26%), Positives = 163/335 (48%), Gaps = 41/335 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44
           + +L GG S+E EVS  S  +    ++ + + V  I + +                    
Sbjct: 5   VGILFGGQSTEHEVSRVSASSVLKNIDLSKYDVYPIGITKDGKWFEYTGSVDNIESGEWE 64

Query: 45  ------------VLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
                       +L + + D+ F V+HG +GEDG +Q + +LL+IP    G+++SA+ MD
Sbjct: 65  KDEFYKNPNGQEILFNREVDVVFPVMHGLYGEDGTIQGLCKLLDIPCVGPGVMSSAVCMD 124

Query: 93  KMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSLGIIV 143
           K+ +K V+ + G+     ++V      +         ++ +     IKP   GSS+GI  
Sbjct: 125 KVYTKYVLENFGIKQADYVVVTAHDYKTIKEDILTKIENKLGYDVFIKPSNSGSSVGISK 184

Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV--TEIAVPKSDFYS 201
               + +   L ++  ++   ++L+E  ++  E+   V+G+   +       VP ++FY 
Sbjct: 185 AHNREELEKGLSEALKFDR--KVLVETALNAREIEVAVLGNDEPEAATPGEIVPANEFYD 242

Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
           YE KYS+  S  +LPA +     ++V+ LA   ++ + C G+SR DFL D  + +V+  E
Sbjct: 243 YEAKYSNAESKLLLPANLSEKKLEKVKELAIRIYKMLDCSGMSRVDFLVDKETEEVYLNE 302

Query: 262 INVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           IN  PG T +S++P+M    G S+  L+  ++E A
Sbjct: 303 INTIPGFTKISMYPKMWQAEGKSYGNLISEIIELA 337


>gi|209519097|ref|ZP_03267903.1| D-alanine/D-alanine ligase [Burkholderia sp. H160]
 gi|209500469|gb|EEA00519.1| D-alanine/D-alanine ligase [Burkholderia sp. H160]
          Length = 313

 Score =  325 bits (833), Expect = 7e-87,   Method: Composition-based stats.
 Identities = 100/296 (33%), Positives = 155/296 (52%), Gaps = 11/296 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SG+     L DAG      D        L       AFN LHG
Sbjct: 12  VAVLLGGNSAEREVSLNSGRLVLQGLRDAGVDAHPFDPAERPLSALKEEGFVRAFNALHG 71

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117
            +GE+G +Q  L+   I YT SG+L SAL +DK R+K V    G+P  P   V R     
Sbjct: 72  GYGENGQIQGALDFYGIRYTGSGVLGSALGLDKFRTKLVWQQLGIPTPPFEAVLRGDDYE 131

Query: 118 ---MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD- 173
               +    +  P  +KP   GSS+ +I +K   ++P  L+++    +   +++E+ ++ 
Sbjct: 132 ARAQEIVAKLGLPLFVKPASEGSSVAVIKVKSADALPAALIEAV--KYDRIVVVEKSIEG 189

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           G E T  + G+  L V  I VP  +FY Y  KY + ++ +++P  +  +    ++ LA  
Sbjct: 190 GGEYTACIAGNLDLPVIRI-VPAGEFYDYHAKYIANDTQYLIPCGLGAEEEARLKVLARR 248

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           A   +GC    R+DF+ D    K ++LE+N  PGMT  S+ P+ A   G S++EL+
Sbjct: 249 AFDVLGCTDWGRADFMLDG-EGKPYFLEVNTAPGMTDHSLPPKAARAVGISYQELV 303


>gi|115350519|ref|YP_772358.1| D-alanine--D-alanine ligase [Burkholderia ambifaria AMMD]
 gi|122324102|sp|Q0BIJ9|DDL_BURCM RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|115280507|gb|ABI86024.1| D-alanine--D-alanine ligase [Burkholderia ambifaria AMMD]
          Length = 313

 Score =  325 bits (833), Expect = 7e-87,   Method: Composition-based stats.
 Identities = 103/300 (34%), Positives = 159/300 (53%), Gaps = 11/300 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL+SG+     L DAG      D        L       AFN LHG
Sbjct: 12  VAVLFGGESAEREVSLTSGRLVLQGLRDAGIDAHPFDPAERPLSALKDEGFVRAFNALHG 71

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118
            +GE+G +Q  L+   I YT SG+L SAL +DK R+K V    GVP  P   V R     
Sbjct: 72  GYGENGQIQGALDFYGIRYTGSGVLGSALGLDKFRTKLVWQQTGVPTPPFETVMRGDDYA 131

Query: 119 ----DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD- 173
               D    +  P  +KP   GSS+ ++ +K   ++P  L +++   H   +++E+ ++ 
Sbjct: 132 ARATDIVAKLGLPLFVKPASEGSSVAVLKVKTADALPAALSEAA--THDKIVIVEKSIEG 189

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           G E T  + GD  L + +I VP  +FY Y  KY + ++ +++P  +P +   E++R+A  
Sbjct: 190 GGEYTACIAGDLDLPLIKI-VPAGEFYDYHAKYVANDTQYLIPCGLPAEQETELKRIARR 248

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           A   +GC    R+DF+ D      ++LE+N  PGMT  S+ P+ A   G S+ EL++ ++
Sbjct: 249 AFDVLGCTDWGRADFMLDAAGNA-YFLEVNTAPGMTDHSLPPKAARSIGISYSELVVKVL 307


>gi|332305227|ref|YP_004433078.1| D-alanine/D-alanine ligase [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332172556|gb|AEE21810.1| D-alanine/D-alanine ligase [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 326

 Score =  325 bits (833), Expect = 7e-87,   Method: Composition-based stats.
 Identities = 102/302 (33%), Positives = 159/302 (52%), Gaps = 10/302 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AV+ GG S+EREVSL SG+A  +AL  AG      D        L   K D    +LHG
Sbjct: 28  VAVMFGGRSAEREVSLRSGQAVLNALVGAGVNAHGFDPADRQLHELVEQKFDRVLIMLHG 87

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118
             GEDG +Q  L+ + +PYT +G+L SAL MDK+RSKQV  S G+P     + ++     
Sbjct: 88  RGGEDGSLQGALQQMNMPYTGTGVLGSALCMDKIRSKQVWQSLGLPTANYEIADKRDFNA 147

Query: 119 ----DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
               D    +    ++KP + GSS+G+  +     +   + Q  ++ + D++L+EQ++ G
Sbjct: 148 ANCGDIMTRLGDLVMVKPAQEGSSIGMAKVSNAHQLAAAIQQ--AFEYDDKVLLEQFIQG 205

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
            E T  ++   +L    ++ P+ DFY YE KY S ++ +  P+ +  +   ++ +LA  A
Sbjct: 206 SEYTVSLLNGIALPSISMSTPR-DFYDYEAKYQSNSTEYFCPSGLSDEQETDLAQLALNA 264

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             A+   G  R DF+ D    + + LE N  PGMT  S+ P  A  AG SF +L L ++ 
Sbjct: 265 FDAVAGTGWGRIDFMQDAQ-GQFYLLEANTVPGMTEKSLVPLAAKQAGLSFAQLSLAVLA 323

Query: 295 DA 296
            A
Sbjct: 324 TA 325


>gi|257065509|ref|YP_003145181.1| D-alanine--D-alanine ligase [Slackia heliotrinireducens DSM 20476]
 gi|256793162|gb|ACV23832.1| D-alanine--D-alanine ligase [Slackia heliotrinireducens DSM 20476]
          Length = 317

 Score =  325 bits (833), Expect = 7e-87,   Method: Composition-based stats.
 Identities = 114/307 (37%), Positives = 179/307 (58%), Gaps = 14/307 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-DRSVGLVLAHLKPDLAFNVLH 59
           +AVL GG S EREVSL+SGKACA ALE +GF+V+ +D  +++    L     D+AF  LH
Sbjct: 12  VAVLCGGKSGEREVSLNSGKACAEALEASGFEVTLLDTAEKADLKRLIDEPFDVAFLALH 71

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G  GEDG +Q  LE + IPYT SGI AS+++++K ++K   +  G+ V  S+ ++   + 
Sbjct: 72  GRGGEDGTIQGFLETVGIPYTGSGINASSVAINKSKAKDAYAQAGLRVAASMTISEDDIL 131

Query: 120 SQHLI-------SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
            ++LI         P V+KP   GSSLG+ +++    I   +  + +     + ++EQ++
Sbjct: 132 DENLISDIVETCGIPCVVKPTTEGSSLGMTIVRDAADIAEAIKTALA--VDVEAMVEQFI 189

Query: 173 DGIELTCGVMGD---ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
            G ELT GV+G+    +L V +I   + +FY+Y  KY++  S H+ PA +  D+ +  Q 
Sbjct: 190 SGTELTVGVIGNDDAEALPVIQIVPTEDEFYNYHAKYAAGGSRHLCPAPVSRDVTENAQE 249

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           +A  AH  +GCRG+SR+D + D      + LE N  PGMT  S+ P+ A  AG  F++L 
Sbjct: 250 MAVAAHMVLGCRGVSRTDIIVDA-DDTCWVLETNTIPGMTGTSLVPDAAKVAGMDFQQLC 308

Query: 290 LWMVEDA 296
             ++  A
Sbjct: 309 EKLIALA 315


>gi|269127661|ref|YP_003301031.1| D-alanine/D-alanine ligase [Thermomonospora curvata DSM 43183]
 gi|268312619|gb|ACY98993.1| D-alanine/D-alanine ligase [Thermomonospora curvata DSM 43183]
          Length = 336

 Score =  325 bits (833), Expect = 7e-87,   Method: Composition-based stats.
 Identities = 115/332 (34%), Positives = 166/332 (50%), Gaps = 37/332 (11%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID----------VDRSVGLVLAHLK 50
           +AVL GG SSEREVS++S     +AL D G  V  ID          V+  V   +A+  
Sbjct: 3   IAVLFGGASSEREVSIASAAQVFTALRDRGHDVIAIDTAKGKLSPQEVEAFVSATVAYDP 62

Query: 51  P------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           P                        D+ F  LHG  GEDG +QA+L+   IPYT SG+L 
Sbjct: 63  PGVDDIPASEVTARLTAEDSELRGVDVVFLALHGGSGEDGTLQALLKAAGIPYTGSGVLG 122

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           SA++MDK  SK++    GVP    I+      +    I  P ++KP   GS++G+ V+K 
Sbjct: 123 SAVAMDKDMSKRLFRQAGVPTPDWIMAPATAAEVAERIGFPAIVKPNSQGSTIGLTVVKA 182

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
            + +   +  +++W+H  +++IE++V G EL  GV+   +L V EI     + + Y+ KY
Sbjct: 183 PEQLEEAIATAAAWDH--EVMIERFVPGRELVVGVLDGRALAVGEIVPQLGEIFDYQSKY 240

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
               +    PA +P +   EVQRLA  AH+A+     SR DF  D   R ++ LE N  P
Sbjct: 241 QVGGAVETFPADLPAETAAEVQRLAVAAHRALKLGSYSRIDFRLDAQGR-LWCLEANTLP 299

Query: 267 GMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           GMT  S+ P+ AA  G  F EL   + E A  
Sbjct: 300 GMTATSLMPQSAAAVGIGFAELCERLCELALA 331


>gi|322513885|ref|ZP_08066964.1| D-alanine-D-alanine ligase B [Actinobacillus ureae ATCC 25976]
 gi|322120284|gb|EFX92231.1| D-alanine-D-alanine ligase B [Actinobacillus ureae ATCC 25976]
          Length = 303

 Score =  324 bits (832), Expect = 7e-87,   Method: Composition-based stats.
 Identities = 101/301 (33%), Positives = 163/301 (54%), Gaps = 9/301 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG+S EREVSL+SG A   AL+  G+ V  ID        L        FN+LHG
Sbjct: 8   IAVLFGGVSQEREVSLNSGAAVTKALKSLGYNVEGIDTKDFPIEKLKEKGIQRVFNILHG 67

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GE+G++Q  LE + IPYT  G++ASA+++DK R+K +  + G+P    ++V R     
Sbjct: 68  GIGENGVLQGALEQMGIPYTGCGVMASAVTLDKFRTKLMWQAVGLPTAEMVVVRRGEAVD 127

Query: 121 QH----LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
                  +  P  +KP   GSS+G+   K  + +   + ++  +     +L+E ++ G E
Sbjct: 128 SEQIIAKLGLPVFVKPSSEGSSVGVTKAKTVEQLLPAIEEALKF--DSIVLVEAFLTGKE 185

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
            +  V+    L   ++ +P  +FY Y  KY S N+ +V+PA +  +   EV +L  +A+ 
Sbjct: 186 YSVPVLDGQVLPAVQV-IPDGEFYDYHAKYVSDNTQYVVPA-LTDERQAEVAKLVKVAYD 243

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            +GCRG SR D + +  +     +E+N  PGMT  SIFP+ AA  G  F +L+  ++E +
Sbjct: 244 VVGCRGWSRIDVM-EDANGHFNLVEVNTCPGMTSHSIFPKSAATVGIPFEKLVERVLELS 302

Query: 297 S 297
           +
Sbjct: 303 A 303


>gi|15805391|ref|NP_294085.1| D-alanyl-alanine synthetase A [Deinococcus radiodurans R1]
 gi|22095571|sp|Q9RXF1|DDL_DEIRA RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|6458038|gb|AAF09941.1|AE001896_6 D-alanine--D-alanine ligase [Deinococcus radiodurans R1]
          Length = 339

 Score =  324 bits (832), Expect = 7e-87,   Method: Composition-based stats.
 Identities = 95/337 (28%), Positives = 160/337 (47%), Gaps = 39/337 (11%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           + +L GG S E EVSL S ++  +AL    F V+ + + +    +               
Sbjct: 5   ILLLAGGQSGEHEVSLRSARSVLAALPRDQFDVTPVVISKQGRWLPPTETQKALETGVSS 64

Query: 46  ----------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
                      A    D  F +LHG  GEDG +Q +L L  IP+  SG+L SA+SMDK+ 
Sbjct: 65  QGGDLMLHRAAAAEGYDAVFPLLHGPMGEDGTIQGLLTLAGIPFVGSGVLGSAVSMDKVM 124

Query: 96  SKQVVSSCGVPVCPSILVNRFTMDS--------QHLISPPYVIKPLKGGSSLGIIVIKKD 147
           +KQV+ S G+P     L  R                +  P  +KP   GSS+GI  +   
Sbjct: 125 TKQVLDSAGIPQVAWRLAVRREWQQTPDAVRARAAELGYPLFVKPANLGSSVGISKVGSP 184

Query: 148 QSIPLDLLQSSSWNHGDQLLIEQYV--DGIELTCGVMGDASLDVTEIAVP--KSDFYSYE 203
           + +  D   + ++    ++++E        E+  G++G+     + +      +DFY YE
Sbjct: 185 EEL--DAALTLAFGLDRRVILEAMTPHKPREVEVGILGNDVPVASPVGELSFDADFYDYE 242

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            KY+   +   +PA+IP ++ + ++  A  A +A+ C G++R DF +   + ++F  E+N
Sbjct: 243 TKYTEGRAEMHIPARIPPEVSERIRTEALRAFRALDCAGLARVDFFYVEETGELFLNEVN 302

Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
             PG T  S++P++   AG S+ EL+  +VE A   R
Sbjct: 303 TMPGFTTTSMYPKLFEAAGLSYSELVTRLVELALEER 339


>gi|238910316|ref|ZP_04654153.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Tennessee str. CDC07-0191]
          Length = 301

 Score =  324 bits (832), Expect = 7e-87,   Method: Composition-based stats.
 Identities = 121/296 (40%), Positives = 180/296 (60%), Gaps = 5/296 (1%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62
           VL GG S ER++S+ +G+ACA+AL+DAG+    IDVDR++   L  + PD+ FN LHG +
Sbjct: 6   VLCGGFSKERDISMVTGRACAAALKDAGYDAYIIDVDRTLPEKLRQINPDVCFNALHGPY 65

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
           GEDG VQ +L ++ IPYTHSG+ AS+++MDK+++K +    G+ +    L++  T  S  
Sbjct: 66  GEDGSVQGLLNIMGIPYTHSGVGASSIAMDKIKTKAIACQHGIHIAEDQLIDYATYKSME 125

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  PYV+KP+  GSS+   +     +  L      +W +    ++E+Y+ G ELT  V 
Sbjct: 126 -IPFPYVLKPVNDGSSIATYIFNTPDAEKL---SEQAWIYNTHAMMERYIKGRELTVTVF 181

Query: 183 GDASLDVTEIAVP-KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241
            +  + VTEI       FY++  KY +  S H LPA IP   +      A   H  +GCR
Sbjct: 182 MNKPVTVTEIIPSTDHQFYNFHAKYDTGGSLHSLPADIPDKAFNICMENALAMHILLGCR 241

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           GISRSDF+ +  +  +F+LEIN QPGMTP S+ PE  A+AG SF +L+  +V++A+
Sbjct: 242 GISRSDFILEENTGNIFFLEINTQPGMTPTSLVPEQLAWAGISFTQLVSLLVDEAT 297


>gi|269213848|ref|ZP_05982990.2| D-alanine--D-alanine ligase B [Neisseria cinerea ATCC 14685]
 gi|269145191|gb|EEZ71609.1| D-alanine--D-alanine ligase B [Neisseria cinerea ATCC 14685]
          Length = 319

 Score =  324 bits (832), Expect = 8e-87,   Method: Composition-based stats.
 Identities = 104/299 (34%), Positives = 159/299 (53%), Gaps = 7/299 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSERE+SL SG A  +AL+  G      D   +    L +     AFN+LHG
Sbjct: 22  VAVLMGGFSSEREISLDSGAAILNALKSKGIDAHAFDPKETPLAELKNQGFQTAFNILHG 81

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--M 118
            +GEDG VQ  LELL IPYT SG+ ASA+ MDK R K +  + G+PV    +++  +   
Sbjct: 82  TYGEDGAVQGALELLGIPYTGSGVAASAIGMDKYRCKLIWQALGLPVPEFAVLHEDSDFD 141

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
             +  +  P  +KP   GSS+G++ +K+   +    +     +   +++ E+++ G E +
Sbjct: 142 AVEQQLGLPMFVKPAAEGSSVGVVKVKEKGRLKS--VYEELKHLQGEIIAERFIGGGEYS 199

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQA 237
           C V+    L    I +P ++FY YE KY+  ++ +  P   +       ++ LA    QA
Sbjct: 200 CPVLNGKGLPSIHI-IPATEFYDYEAKYNRDDTVYQCPSEDLSEAEENLMRALAVRGAQA 258

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           IG  G  R DF       K++ LEIN  PGMT  S+ P+ AA  G  F +L + +++ A
Sbjct: 259 IGAEGCVRVDF-LRDTDGKLYLLEINTLPGMTSHSLVPKSAARTGVDFADLCIEILKTA 316


>gi|258511603|ref|YP_003185037.1| D-alanine/D-alanine ligase [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
 gi|257478329|gb|ACV58648.1| D-alanine/D-alanine ligase [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 383

 Score =  324 bits (832), Expect = 8e-87,   Method: Composition-based stats.
 Identities = 100/361 (27%), Positives = 163/361 (45%), Gaps = 67/361 (18%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP- 51
           + V+ GG S E EVSL S K+   AL+   +    I + +             L   +P 
Sbjct: 8   VGVIFGGKSGEHEVSLQSAKSVMDALDPLHYTTIPIGISKDGRWHVGKGAWKALEAKQPA 67

Query: 52  ---------------------------------------------DLAFNVLHGNFGEDG 66
                                                        D+ F VLHG FGEDG
Sbjct: 68  ALPSKSAQNASSPSNRFINPEIQGLSPVEVKRSPDWLPPALVNEIDVVFPVLHGTFGEDG 127

Query: 67  LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-------- 118
            +Q +LE++ IPY  SG+LASAL MDK+  KQ+ S+ G+P    +   R +         
Sbjct: 128 TIQGLLEMVGIPYVGSGVLASALGMDKIAMKQIFSAVGIPQARWVGFTRASWAQDDGRIV 187

Query: 119 -DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            + +  +  P  +KP   GSS+GI   +  + +   +  + S++   ++++E+ +D  E+
Sbjct: 188 REIEEQLGYPCFVKPANLGSSVGISKARNQRELVEAVHLALSYDR--RVIVEEAIDAREI 245

Query: 178 TCGVMGDASL--DVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
             G++G+      V    VPK +FY YE KY    +   +PA +  +  K V+  A  A 
Sbjct: 246 EIGILGNDDPIASVAGEIVPKREFYDYEAKYQDGGAELRIPADLSPEERKAVESYAIRAF 305

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           QAI   G++R DF  +  + +V   EIN  PG T  S++P++   +G ++ +LL  ++E 
Sbjct: 306 QAIDGSGLARVDFFVERGTGRVLVNEINTMPGFTRFSMYPKLWEASGLAYDKLLDRLIEL 365

Query: 296 A 296
           A
Sbjct: 366 A 366


>gi|238911487|ref|ZP_04655324.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Tennessee str. CDC07-0191]
          Length = 364

 Score =  324 bits (832), Expect = 8e-87,   Method: Composition-based stats.
 Identities = 86/348 (24%), Positives = 165/348 (47%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50
           + ++ GG S+E EVSL S K    A++   F V  + +D++    +   +          
Sbjct: 6   VGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGIDKAGQWHVNDAENYLQNADDPA 65

Query: 51  ---------------------------------PDLAFNVLHGNFGEDGLVQAILELLEI 77
                                             D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  HIALRPSAISLAQVPGKHQHQLINAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR------FTMDSQHLISPPYVIK 131
           P+  S +L+SA  MDK  +K+++   G+ + P I + R         + +  +  P  +K
Sbjct: 126 PFVGSDVLSSAACMDKDVAKRLLRDAGLNIAPFITLTRTNRHAFSFAEVESRLGLPLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  +  +      +  +  ++H  ++++EQ + G E+ C V+G+ +   + 
Sbjct: 186 PANQGSSVGVSKVTNEAQYQQAVALAFEFDH--KVVVEQGIKGREIECAVLGNDNPQAST 243

Query: 192 IA--VPKSDFYSYELKYSSLN-STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               V  S+FY+Y+ KY   N +  V+PA+IP ++  +++ +A  A+Q +GC G++R D 
Sbjct: 244 CGEIVLNSEFYAYDTKYIDDNGAQVVVPAQIPSEVNDKIRAIAIQAYQTLGCAGMARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                  +V   EIN  PG T +S++P++   +G  + +L+  ++E A
Sbjct: 304 FLTA-DNEVVINEINTLPGFTNISMYPKLWQASGLGYTDLISRLIELA 350


>gi|33598260|ref|NP_885903.1| D-alanine--D-alanine ligase [Bordetella parapertussis 12822]
 gi|39930857|sp|Q7W4B6|DDL_BORPA RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|33566818|emb|CAE39033.1| D-alanine--D-alanine ligase B [Bordetella parapertussis]
          Length = 316

 Score =  324 bits (832), Expect = 8e-87,   Method: Composition-based stats.
 Identities = 111/305 (36%), Positives = 159/305 (52%), Gaps = 10/305 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VL GG S+EREVSL SGK    AL  AG      D        LA    +  F  LHG
Sbjct: 8   VGVLYGGRSAEREVSLMSGKGVHEALLSAGVDAHLFDTGERSLADLAAAGFERVFIALHG 67

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG +Q  LELL IPYT SG LAS+LSMDK+ +K+V    G+P     ++   T   
Sbjct: 68  RYGEDGTLQGALELLGIPYTGSGPLASSLSMDKIMTKRVWLQHGLPTPAFEVLGGSTELR 127

Query: 121 --QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                +  P ++KP   GS++GI  +     +      ++ +    ++L EQ++ G ELT
Sbjct: 128 LVPDRLGLPLILKPPHEGSTVGITKVAGYSDMKAAYELAARF--DAEVLAEQFITGRELT 185

Query: 179 CGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
             V+G      +L V EI  P    Y YE KY S ++ +  PA +P D+  +V  +A  A
Sbjct: 186 VAVLGSGAAARALPVIEIVAP-GGNYDYEHKYFSDDTQYFCPADLPADVAADVAAVAERA 244

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           + A+GC G  R DF+ D  +R  + LE+N  PGMT  S+ P  A   G S+ +L + ++ 
Sbjct: 245 YAALGCEGWGRVDFILDRENR-PWLLEMNTSPGMTGHSLVPMAARAVGMSYADLCVAILA 303

Query: 295 DASCL 299
            A+C 
Sbjct: 304 KAACK 308


>gi|304310630|ref|YP_003810228.1| D-alanine-D-alanine ligase [gamma proteobacterium HdN1]
 gi|301796363|emb|CBL44571.1| D-alanine-D-alanine ligase [gamma proteobacterium HdN1]
          Length = 362

 Score =  324 bits (832), Expect = 8e-87,   Method: Composition-based stats.
 Identities = 94/344 (27%), Positives = 157/344 (45%), Gaps = 51/344 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGF--------------------KVSQIDV-- 38
           +A++ GG S+E EVS+ S +  A AL+ + F                     + + D   
Sbjct: 7   VALVFGGRSAEHEVSIRSARNIAEALDKSRFILELLGVSKQGDWFYFSQAKDLYEFDTIC 66

Query: 39  -------DRSVGLVLAHLKP-----------DLAFNVLHGNFGEDGLVQAILELLEIPYT 80
                   + V       +P           D+AF +LHG +GEDG VQ + ++L +PY 
Sbjct: 67  STQPPASGKPVLFGSRQARPIMTTADDTISVDVAFPILHGTYGEDGCVQGLFKMLNLPYV 126

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGG 136
              +++SA  MDK   K++    G+P    +LV R         +  +  P  IKP   G
Sbjct: 127 GCDVMSSATGMDKDIMKRLFLQAGIPTADYVLVTRTDTPDFPLYREKLGLPMFIKPANAG 186

Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD---VTEIA 193
           SS+G+  +K +      L    +  +  +++IE+Y+ G E+ C V+G             
Sbjct: 187 SSIGVHKVKTEAEFGPAL--EDALRYDRKVIIERYIQGREIECSVLGTTDAPKASTAGEV 244

Query: 194 VPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
           +   DFYSYE KY     +   +PAKI       +Q LA     A+GC G++R DF    
Sbjct: 245 ITTHDFYSYEAKYLDENGARTEIPAKIDAATLARIQALAEKTFTAMGCFGMARVDFFLTE 304

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
               ++  EIN  PG T +S++P+M  ++G ++ +L+  +++ A
Sbjct: 305 S-GALYVNEINTLPGFTNISMYPKMWEHSGVTYTDLITRLIDLA 347


>gi|209545283|ref|YP_002277512.1| D-alanine--D-alanine ligase [Gluconacetobacter diazotrophicus PAl
           5]
 gi|209532960|gb|ACI52897.1| D-alanine/D-alanine ligase [Gluconacetobacter diazotrophicus PAl 5]
          Length = 315

 Score =  324 bits (832), Expect = 8e-87,   Method: Composition-based stats.
 Identities = 126/310 (40%), Positives = 185/310 (59%), Gaps = 13/310 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL---KPDLAFNV 57
           + VL GG+S+ER VSLSSG   ++AL + GF V  +D    +G ++A L   +PD+ FN 
Sbjct: 7   ITVLTGGLSAERTVSLSSGAGISAALREEGFDVRVLDAGPDLGAIVADLTAHRPDVVFNA 66

Query: 58  LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117
           LHG FGEDG +Q +L+ + IPYTHSG+ ASA++MDK  ++    + G+PV    ++    
Sbjct: 67  LHGRFGEDGSIQGVLDWMNIPYTHSGVRASAMAMDKAAARSAFRAAGLPVAQGGVIAIAD 126

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
             +   +  PYVIKPL  GSS+G+ +++   +    +  + +W +G   L+E+++ G EL
Sbjct: 127 FPAADPLPAPYVIKPLNEGSSVGVEIVRPGTNRRAAI--ADAWTYGPLALVEEFIPGREL 184

Query: 178 TCGVMGDASLDVTEIAV---PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
           T GVMGD +L VT+I        +FY Y  KY +  S H+LPA+I  D + +   LA  A
Sbjct: 185 TVGVMGDRALTVTDITPNPDAGHEFYDYAAKYQNGGSRHILPARIHPDAFAQALDLAVAA 244

Query: 235 HQAIGCRGISRSDFLFDPLS-----RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           H+A+GC G SR+DF +D         ++  LE+N QPGMTP S+ PE A   G  +  L 
Sbjct: 245 HRALGCAGASRTDFRYDDTQCGDGPGRLVILEVNTQPGMTPTSLLPEQAGACGIPYGALC 304

Query: 290 LWMVEDASCL 299
            WMVE A+C 
Sbjct: 305 RWMVEHAACR 314


>gi|150015470|ref|YP_001307724.1| D-alanine--D-alanine ligase [Clostridium beijerinckii NCIMB 8052]
 gi|189083037|sp|A6LQY8|DDL_CLOB8 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|149901935|gb|ABR32768.1| D-alanine--D-alanine ligase [Clostridium beijerinckii NCIMB 8052]
          Length = 301

 Score =  324 bits (832), Expect = 9e-87,   Method: Composition-based stats.
 Identities = 99/299 (33%), Positives = 168/299 (56%), Gaps = 8/299 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGGISSERE+SL SGK+    +    ++V  I +D+   ++      D A   LHG
Sbjct: 3   IGVIMGGISSEREISLQSGKSIIENINKEKYEVLPIVIDKKEDIINKSKGIDFALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF---T 117
            FGEDG VQ++L+ L IPY+  G L+SA+ MDK  SK V+ + G+   P I + +     
Sbjct: 63  QFGEDGTVQSVLQTLGIPYSGCGPLSSAMCMDKDVSKSVLEANGIRTAPWINLRKGDNID 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            +  + +  P V+KP  GGSS+   ++K+++ I      S ++    +++IE+++ G E+
Sbjct: 123 FNKINELGYPVVVKPTHGGSSVATFIVKEEKEIE--NCVSEAFKWDSEVMIEKFIKGDEI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC V  +  L V  I  PK++F+ +  KY    +  ++  ++  +++KEV+++A   ++A
Sbjct: 181 TCPVYNNKMLPVIAIK-PKAEFFDFTSKYQDGGAEEIV-VELEAELHKEVEKMALETYKA 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           + C   SR D +        + LEIN  PGMT  S+ P+ AA     F EL+  +++D+
Sbjct: 239 LKCEVYSRVDMIVTE-EGVPYILEINTLPGMTKNSLIPKSAAALNIGFSELIDMIIQDS 296


>gi|225077392|ref|ZP_03720591.1| hypothetical protein NEIFLAOT_02453 [Neisseria flavescens
           NRL30031/H210]
 gi|224951276|gb|EEG32485.1| hypothetical protein NEIFLAOT_02453 [Neisseria flavescens
           NRL30031/H210]
          Length = 304

 Score =  324 bits (832), Expect = 9e-87,   Method: Composition-based stats.
 Identities = 107/299 (35%), Positives = 161/299 (53%), Gaps = 7/299 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSEREVSL SG A  +AL+  G      D   +    L       AFN+LHG
Sbjct: 7   VAVLMGGFSSEREVSLDSGAAILAALKSKGVDAHAFDPKETPLSELKTQGFQTAFNILHG 66

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-ILVNRFTMD 119
            FGEDG +Q  LEL+ IPYT SG+ ASAL MDK R K +  + G+PV    +L +    D
Sbjct: 67  TFGEDGAIQGALELMGIPYTGSGVAASALGMDKYRCKLIWQAVGLPVPEFAVLHDDSDFD 126

Query: 120 S-QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           + +  +  P  +KP   GSS+G++ +K+   +    +     +   +++ E+++ G E +
Sbjct: 127 AVEEKLGLPMFVKPASEGSSVGVVKVKEKGRLKS--VYEELKHLQGEIIAERFIGGGEYS 184

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQA 237
           C V+    L    I +P ++FY YE KY+  ++ +  P   +       ++ LA    QA
Sbjct: 185 CPVLNGKGLPSIHI-IPAAEFYDYEAKYNRDDTVYQCPSEDLSEAEENLMRELAVRGAQA 243

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           IG  G SR DF    +  K++ LEIN  PGMT  S+ P+ A + G  F +L + +++ A
Sbjct: 244 IGADGCSRVDF-LKDMDGKLYLLEINTLPGMTSHSLVPKSAGHTGVDFTDLCIEILKTA 301


>gi|324114603|gb|EGC08571.1| D-alanine-D-alanine ligase [Escherichia fergusonii B253]
          Length = 364

 Score =  324 bits (832), Expect = 9e-87,   Method: Composition-based stats.
 Identities = 88/348 (25%), Positives = 161/348 (46%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP- 51
           + ++ GG S+E EVSL S K    A++   F V  + +D+            +L    P 
Sbjct: 6   VGIVFGGKSAEHEVSLQSAKNIVDAIDKNRFDVVLLGIDKQGQWHVSDAANYLLNADDPA 65

Query: 52  ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
                                             D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  RIALRPSATSLAQVPGKHEQQLIDAQTAQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLISPPYVIK 131
           P+  S +L SA  MDK  +K+++   G+ + P + + R         + +  +  P  +K
Sbjct: 126 PFVGSDVLGSAACMDKDVTKRLLRDAGLNIAPFVTLTRANRSTITFAEIEAQLGLPLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  +  +      +    ++ +  ++++E+ + G E+ C V+G+     + 
Sbjct: 186 PANQGSSVGVSKVTNEAEYKKAVDL--AFEYDHKVVVEKGIKGREIECAVLGNDHPQAST 243

Query: 192 IA--VPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               V  SDFY+Y+ KY   +    V+PA IP +I  +++ +A  A+Q +GC G++R D 
Sbjct: 244 CGEIVLNSDFYAYDTKYIDDDGAKVVVPAAIPAEINDKIREIAVKAYQTLGCAGMARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              P    V   EIN  PG T +S++P++   +G S+ +L+  ++E A
Sbjct: 304 FLTP-ENDVVINEINTLPGFTNISMYPKLWQASGLSYTDLITRLIELA 350


>gi|319944696|ref|ZP_08018960.1| D-alanine-D-alanine ligase B [Lautropia mirabilis ATCC 51599]
 gi|319741945|gb|EFV94368.1| D-alanine-D-alanine ligase B [Lautropia mirabilis ATCC 51599]
          Length = 334

 Score =  324 bits (832), Expect = 9e-87,   Method: Composition-based stats.
 Identities = 103/303 (33%), Positives = 162/303 (53%), Gaps = 9/303 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VLMGG SSER VSL SG+    AL+  G      D        L     D AF  LHG
Sbjct: 22  VVVLMGGHSSERNVSLDSGRNVLKALQAKGVNAEAFDPAERSLGDLEKAGYDRAFIALHG 81

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTM 118
            +GEDG +Q +LE+L IPYT SG++ASA+++DK+ +KQ+  +  +P  P  ++       
Sbjct: 82  RYGEDGTIQGVLEMLGIPYTGSGVMASAVAIDKISTKQMWQAGRLPTPPWEVLLGPHQLA 141

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                +  P +IKP   GS+LG+  +     +P    +++  +    +L E++V G ELT
Sbjct: 142 GLAERLGLPLIIKPPHEGSTLGLTRVDSLDRLPAAYERAA--DIDFPVLAERFVQGRELT 199

Query: 179 CGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
             V+G      +L + EI  P  + Y Y  KY + ++ ++ PA +   +  ++  LA  A
Sbjct: 200 VAVIGSGAAARALPIVEIRAPNGN-YDYRNKYFTDDTRYLCPAPLVPAMAADIASLAEAA 258

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           ++A+GC G  R D + D  +++ + LE+N  PGMT  S+ P  A  AG S+ +L+L +  
Sbjct: 259 YRAVGCEGWGRVDIMLDDGTQRPWLLEVNTSPGMTGHSLVPMAARAAGISYEDLVLGLTA 318

Query: 295 DAS 297
            AS
Sbjct: 319 QAS 321


>gi|290510033|ref|ZP_06549403.1| D-alanine-D-alanine ligase [Klebsiella sp. 1_1_55]
 gi|289776749|gb|EFD84747.1| D-alanine-D-alanine ligase [Klebsiella sp. 1_1_55]
          Length = 369

 Score =  324 bits (832), Expect = 9e-87,   Method: Composition-based stats.
 Identities = 90/348 (25%), Positives = 162/348 (46%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP- 51
           + ++ GG S+E EVSL S K    A++ + F V  + +D+            +L    P 
Sbjct: 10  VGIVFGGKSAEHEVSLQSAKNIVEAIDKSRFDVVLLGIDKQGLWHINDAGNYLLNAQDPA 69

Query: 52  ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
                                             D+ F ++HG  GEDG +Q +L +  +
Sbjct: 70  RIALRPSTVTLAQIPGREAQQLINADSGQPLAAIDVIFPIVHGTLGEDGSLQGMLRMANL 129

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLISPPYVIK 131
           P+  S +L SA  MDK  +K+++   G+ V P I + R         D +  +  P  +K
Sbjct: 130 PFVGSDVLGSAACMDKDVTKRLLRDAGLAVAPFITLTRANRAQFSFADVEAKLGLPLFVK 189

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  +K ++     +  +  ++H  ++++EQ + G E+ C V+G+     + 
Sbjct: 190 PANQGSSVGVSKVKNEEQYHQAVALAFEFDH--KVVVEQGIKGREIECAVLGNDHPQAST 247

Query: 192 IA--VPKSDFYSYELKYSSL-NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               V  S+FY+Y+ KY     +  V+PA I  +I  +++ +A  A+Q +GC G++R D 
Sbjct: 248 CGEIVLNSEFYAYDTKYIDDQGAQVVVPAAIAPEINDKIRAIAVQAYQTLGCSGMARVDV 307

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                  +V   EIN  PG T +S++P++   +G  +  L+  ++E A
Sbjct: 308 FLTA-ENEVVINEINTLPGFTNISMYPKLWQASGLDYTSLITRLIELA 354


>gi|242240647|ref|YP_002988828.1| D-alanine/D-alanine ligase [Dickeya dadantii Ech703]
 gi|242132704|gb|ACS87006.1| D-alanine/D-alanine ligase [Dickeya dadantii Ech703]
          Length = 366

 Score =  324 bits (831), Expect = 9e-87,   Method: Composition-based stats.
 Identities = 93/348 (26%), Positives = 160/348 (45%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           + V+ GG SSE EVSL S K    A++   F V  + +D+     L              
Sbjct: 6   VGVVFGGKSSEHEVSLQSAKNIVDAIDKTRFDVVLLGIDKQGAWHLNDASNYLLNANNPS 65

Query: 50  --------------------------------KPDLAFNVLHGNFGEDGLVQAILELLEI 77
                                           + D+ F ++HG  GEDG +Q +L +  I
Sbjct: 66  LIALNRSSRNIALVPGQSHNQLIETSNASALSQIDVIFPIVHGTLGEDGSLQGLLRMANI 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR------FTMDSQHLISPPYVIK 131
           P+  S +L SA+SMDK  +K+++   G+ V P + + R         D    +  P  IK
Sbjct: 126 PFVGSSVLGSAVSMDKDVTKRLLRDTGLMVAPFVTLTRANRERHHFADITARLGLPLFIK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  ++ +      +  + S++H  ++L+E  + G E+ C V+G+   + + 
Sbjct: 186 PANQGSSVGVSKVRNEAQYQQAVELAFSYDH--KVLVESAIVGREIECAVLGNDHPEASV 243

Query: 192 IA--VPKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               V   +FYSY+ KY S +   V +PA +P   ++ ++ +A  A QA+ C+G++R D 
Sbjct: 244 CGEIVVHDEFYSYDTKYISEDGAAVAIPAPMPDSTHQRIREIAVQAFQALDCQGMARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              P    V   E+N  PG T +S++P++    G  +  L+  ++E A
Sbjct: 304 FLTPQED-VIVNEVNTLPGFTNISMYPKLWEATGIGYTALITRLIELA 350


>gi|307719433|ref|YP_003874965.1| D-alanine--D-alanine ligase [Spirochaeta thermophila DSM 6192]
 gi|306533158|gb|ADN02692.1| D-alanine--D-alanine ligase [Spirochaeta thermophila DSM 6192]
          Length = 364

 Score =  324 bits (831), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 105/339 (30%), Positives = 164/339 (48%), Gaps = 48/339 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           +A+L GG S E EVS  S  A    L+   F+V  + +  +    L              
Sbjct: 9   IALLYGGRSGEHEVSCRSAAAIYEHLDRERFEVLPVGITHAGRWYLQREVRVKEGALEVA 68

Query: 47  -------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87
                                L+ D  F ++HG FGEDG +Q +LE   + Y  +G+L S
Sbjct: 69  EDEGAVVWVVPGAGLWCGGEDLRVDCVFPIVHGTFGEDGTLQGLLEQAGVAYVGAGVLGS 128

Query: 88  ALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI--------SPPYVIKPLKGGSSL 139
           AL MDK R+K V    G+P+ P ++V R ++   + +          P  +KP +GGSS+
Sbjct: 129 ALGMDKDRAKAVWLQAGLPILPFMVVRRESLPPWNELAIQLRRRMEFPVFVKPARGGSSV 188

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA---SLDVTEIAVPK 196
           GI  +  ++ +        ++ +  +++IEQ ++  E+ CGV G+    S    EI +  
Sbjct: 189 GISKVHDERGLKKAC--ELAFTYDSKIVIEQGIEAREIECGVWGNEDVRSFPPGEI-IHT 245

Query: 197 SDFYSYELKYSSLNS-THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255
            +FY YE KY         +PA++  +  + V+ LA  A++A+ C G +R DFL D  + 
Sbjct: 246 HEFYDYEAKYEDTEGLQLKIPAELTPEQQEYVRSLAEKAYRALECEGFARVDFLLDTETE 305

Query: 256 KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             +  EIN  PG TPVS+FP MA  AG SF +LL  ++E
Sbjct: 306 VFYLNEINTLPGFTPVSMFPLMAQAAGISFPDLLTRLIE 344


>gi|315186147|gb|EFU19909.1| D-alanine/D-alanine ligase [Spirochaeta thermophila DSM 6578]
          Length = 364

 Score =  324 bits (831), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 104/339 (30%), Positives = 163/339 (48%), Gaps = 48/339 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           +A+L GG S E EVS  S  A    L+   F+V  + +       L              
Sbjct: 9   IALLYGGRSGEHEVSCRSAAAIYEHLDRERFEVLPVGITHEGRWYLQREVRVKDGALEVT 68

Query: 47  -------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87
                                L+ D  F ++HG FGEDG +Q +LE   + Y  +G+L S
Sbjct: 69  EDEGAVVWAVPGAGLWCGGEDLRVDCVFPIVHGTFGEDGTLQGLLEQAGVAYVGAGVLGS 128

Query: 88  ALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI--------SPPYVIKPLKGGSSL 139
           AL MDK R+K V    G+P+ P ++V R ++   + +          P  +KP +GGSS+
Sbjct: 129 ALGMDKDRAKAVWLQAGLPILPFMVVRRESLPPWNELAIQLRRRMEFPVFVKPARGGSSV 188

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA---SLDVTEIAVPK 196
           GI  +  ++ +        ++ +  +++IEQ ++  E+ CGV G+    S    EI +  
Sbjct: 189 GISKVHDERGLKKAC--ELAFTYDSKIVIEQGIEAREIECGVWGNEDVRSFPPGEI-IHT 245

Query: 197 SDFYSYELKYSSLNS-THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255
            +FY YE KY         +PA++  +  + V+ +A  A++A+ C G +R DFL D  + 
Sbjct: 246 HEFYDYEAKYEDTEGLQLKIPAELTPEQQEYVRNVAEKAYRALECEGFARVDFLLDTETE 305

Query: 256 KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             +  EIN  PG TPVS+FP MA  AG SF +LL  ++E
Sbjct: 306 VFYLNEINTLPGFTPVSMFPLMAQAAGISFPDLLTRLIE 344


>gi|307544554|ref|YP_003897033.1| D-alanine--D-alanine ligase [Halomonas elongata DSM 2581]
 gi|307216578|emb|CBV41848.1| D-alanine--D-alanine ligase [Halomonas elongata DSM 2581]
          Length = 305

 Score =  324 bits (831), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 110/298 (36%), Positives = 165/298 (55%), Gaps = 6/298 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VL GG S+EREVSL SG+A  +AL+  G      D        L  L PD  F  LHG
Sbjct: 8   VVVLYGGDSAEREVSLKSGEAILAALQRGGVAPIAFDPAEGGLAGLEALAPDRVFIALHG 67

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q  L+LL IPYT SG+LASAL MDK R+K V  + G+P    +++N  +  +
Sbjct: 68  RGGEDGTLQGALDLLGIPYTGSGVLASALGMDKQRTKLVWQALGLPTPECVMLNAESDWN 127

Query: 121 Q--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                +  P ++KP+  GS+LGI ++   +++      ++   +  +++ E+++ G E T
Sbjct: 128 AVVERLGLPLIVKPVHEGSTLGITIVDSAETLAAAYRDAA--RYDARVMAERFIQGEEYT 185

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             ++GD +L    + VP S FY YE KY S  + + LP  +     K +  L   A +A+
Sbjct: 186 VSLLGDEALPAIRVEVP-SGFYDYEAKYLSDETLYHLPCGLSETDEKALAELCREAFEAV 244

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           GCRG  R D + D   R  + LE+N  PGMT  S+ P+ AA+AG  F  L+L +++ A
Sbjct: 245 GCRGWGRVDVMRDDQGR-FWLLEVNTVPGMTDHSLVPQAAAHAGIDFDTLVLRILDTA 301


>gi|289663635|ref|ZP_06485216.1| D-alanine--D-alanine ligase [Xanthomonas campestris pv. vasculorum
           NCPPB702]
          Length = 318

 Score =  324 bits (831), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 108/302 (35%), Positives = 164/302 (54%), Gaps = 11/302 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG SSEREVSL+SG     AL   G     +D   ++   L   + D  FNVLHG
Sbjct: 19  VAVLLGGTSSEREVSLNSGSNVLEALRARGVDAQPVDGIPALAKALVAQQFDRVFNVLHG 78

Query: 61  --NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
               GEDG+VQ ++E   +PYT S +L SALSMDK+R+KQV  S G+       +     
Sbjct: 79  HNGGGEDGIVQGLMEAFGVPYTGSNVLGSALSMDKIRTKQVWLSLGLSTPRYARLAAGAS 138

Query: 119 DSQ-----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
            ++       I  P ++KP   GSS+G+  +     +   +  ++   +   LL+EQ ++
Sbjct: 139 AAEIHAAAQQIGLPVIVKPANEGSSVGVSRVFDQAQLEEAVTLAA--RYDGALLMEQLIE 196

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           G ELT  V+GD +L    I VPK  +Y Y  KY + ++ ++ P  +  D   ++++LA  
Sbjct: 197 GDELTVAVLGDTALPSIRI-VPKGQWYDYNAKYLAEDTQYLCP-GLEGDAEAQIRQLALD 254

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           A +A+GCRG  R D + D  S +++ LE+N  PGMT  S+ P+ A   G  F  L+  ++
Sbjct: 255 AFRAVGCRGWGRVDVMRDGSSGELYLLEVNAAPGMTSHSLVPKAAHQLGIDFETLVWRVL 314

Query: 294 ED 295
           E 
Sbjct: 315 EQ 316


>gi|308272716|emb|CBX29320.1| D-alanine--D-alanine ligase [uncultured Desulfobacterium sp.]
          Length = 312

 Score =  324 bits (831), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 107/298 (35%), Positives = 177/298 (59%), Gaps = 13/298 (4%)

Query: 6   GGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL-KPDLAFNVLHGNFGE 64
           GGIS EREVS  SG     AL+   + V + D    +  +++     D A  +LHG FGE
Sbjct: 3   GGISVEREVSRKSGDQVYDALDKTKYDVIRYDPASQLLHLVSDSSNIDFALIILHGPFGE 62

Query: 65  DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT----MDS 120
           DG +Q +L+LL+IPY  SG+L SA++M+K  +KQ+    G+PV P I++ +         
Sbjct: 63  DGTIQGLLDLLDIPYQGSGVLGSAVAMNKFAAKQLYEQSGIPVPPYIMIKKGDPVEYKTC 122

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  +  P+++KP+ GGSS+G+ ++K D+S    +   S+++  D +LIE +++GIE+T G
Sbjct: 123 EKRLGSPFIVKPVSGGSSIGVSIVKSDKSFNEAV--ESAFSCDDTVLIETFIEGIEITGG 180

Query: 181 VMGD---ASLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           V+G+    +L + EI   K+  F+ Y  KY +  +  + PA+I   + ++ Q  A +AH+
Sbjct: 181 VIGNDELETLPIVEIIPDKAFKFFDYTAKYKTGATKEICPAQIDDTLTQQAQTYAKMAHK 240

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           A+ C+G SR+D +     ++++ LE N  PGMT  S+ P+ A  AG SF +LL  ++E
Sbjct: 241 ALFCKGYSRTDMIL--SGKEIYVLETNTIPGMTSTSLLPQAAQVAGISFSQLLDKLIE 296


>gi|86604840|ref|YP_473603.1| D-alanine--D-alanine ligase B [Synechococcus sp. JA-3-3Ab]
 gi|123508098|sp|Q2JXY2|DDL_SYNJA RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|86553382|gb|ABC98340.1| D-alanine--D-alanine ligase B [Synechococcus sp. JA-3-3Ab]
          Length = 323

 Score =  324 bits (831), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 109/303 (35%), Positives = 167/303 (55%), Gaps = 10/303 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---PDLAFNV 57
           + +L GG S+ER+VSL +GKAC  ALED G +   ID +  + L L   +    D  +  
Sbjct: 3   IVILAGGRSAERQVSLVTGKACKRALEDLGHRAKLIDPEEDLPLRLWQERQAGCDFVWIA 62

Query: 58  LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR-- 115
           LHG  GEDG+VQ +LE L +PY  SG LASAL+MDK+ SKQ+  + G+P    ++ +   
Sbjct: 63  LHGPGGEDGVVQGMLEWLGLPYQGSGPLASALAMDKLVSKQIFRAEGIPTPEWLVWDEAQ 122

Query: 116 --FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
                +    +  P V+KP   GS++GI + + + S+   L  +SS     ++ +E+Y+ 
Sbjct: 123 PLSWAECVARLGSPLVVKPSNSGSTVGISLARDEVSLAQGLALASS--VSSRVFLERYIP 180

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           G E+T  ++    L   EI   + DFY YE KY+   S H++P  +        +     
Sbjct: 181 GKEITLSILSGQVLPAIEIIPAQGDFYDYEAKYAPGGSRHLIPCSLSAAGLARCEAAGLR 240

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           A++ +GC G++R D   D      + LE+N  PGMTP S+ PE AA  G++F EL+  M+
Sbjct: 241 AYRVLGCEGLARVDLRVDADEN-PWVLEVNTLPGMTPTSLCPEAAAALGWTFTELVERML 299

Query: 294 EDA 296
           +DA
Sbjct: 300 QDA 302


>gi|254253333|ref|ZP_04946651.1| D-alanine-D-alanine ligase [Burkholderia dolosa AUO158]
 gi|124895942|gb|EAY69822.1| D-alanine-D-alanine ligase [Burkholderia dolosa AUO158]
          Length = 313

 Score =  324 bits (831), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 102/300 (34%), Positives = 158/300 (52%), Gaps = 11/300 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL+SG+     L DAG      D        L       AFN LHG
Sbjct: 12  VAVLFGGESAEREVSLTSGRLVLQGLRDAGVDAHPFDPAERPLSALKDEGFVRAFNALHG 71

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118
            +GE+G +Q  L+   I YT SG+L SAL +DK R+K V    GVP  P   V R     
Sbjct: 72  GYGENGQIQGALDFYGIRYTGSGVLGSALGLDKFRTKLVWQQTGVPTPPFETVMRGDDYA 131

Query: 119 ----DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD- 173
               +    +  P  +KP   GSS+ ++ +K   ++P  L +++   H   +++E+ ++ 
Sbjct: 132 ARATEIVAKLGLPLFVKPASEGSSVAVLKVKTADALPAALSEAA--THDKIVIVEKSIEG 189

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           G E T  + GD  L + +I VP  +FY Y  KY + ++ +++P  +P D   E++R+A  
Sbjct: 190 GGEYTACIAGDLDLPLIKI-VPAGEFYDYHAKYVANDTQYLIPCGLPADKEAELKRIARR 248

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           A   +GC    R+DF+ D      ++LE+N  PGMT  S+ P+ A   G  + EL++ ++
Sbjct: 249 AFDVLGCTDWGRADFMLDAQGNA-YFLEVNTAPGMTDHSLPPKAARAIGIGYSELVVKVL 307


>gi|163784016|ref|ZP_02178976.1| D-alanine--D-alanine ligase [Hydrogenivirga sp. 128-5-R1-1]
 gi|159880714|gb|EDP74258.1| D-alanine--D-alanine ligase [Hydrogenivirga sp. 128-5-R1-1]
          Length = 295

 Score =  324 bits (831), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 101/298 (33%), Positives = 161/298 (54%), Gaps = 15/298 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR--SVGLVLAHLKPDLAFNVL 58
           +A+L GG S ERE+S+ SGKA  +AL+  G+     D  +       + +  PDLAF  L
Sbjct: 8   IALLYGGNSKEREISIKSGKAVENALKLLGYNYKVFDPVKGFEFIEEIKNYNPDLAFISL 67

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
           HG  GEDG +Q++LE L I YT S    SA+ MDK+ +K+++SS  +PV  +        
Sbjct: 68  HGKGGEDGEIQSLLEFLGIKYTGSNPKTSAVCMDKVLTKKILSSENIPVPQTF------- 120

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            S+  I  P V+KP + GSS+G+ +    + +   L     + +   ++IEQ++ G E+T
Sbjct: 121 -SKDNIKFPVVVKPSEEGSSIGVYIANNKEDLNDALKHLKDYKN---IIIEQFIKGREIT 176

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             ++    L + EI V    FY Y+ KY S  + ++ PA+I   + +++ ++A    +  
Sbjct: 177 VSILNGKILPIVEIVV-DDGFYDYKNKYISSKTNYICPAEIDEKLQEKINKIAKKCWEVF 235

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            C+G  R D + D  +   + LEIN  PGMT  S+ P+ A   G SF EL+  ++E A
Sbjct: 236 NCKGAVRIDMIIDK-NNTPYVLEINTIPGMTEHSLLPKAAKAIGLSFEELVNEIIEGA 292


>gi|108760939|ref|YP_633740.1| D-alanine--D-alanine ligase [Myxococcus xanthus DK 1622]
 gi|108464819|gb|ABF90004.1| D-alanine--D-alanine ligase [Myxococcus xanthus DK 1622]
          Length = 318

 Score =  323 bits (830), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 117/305 (38%), Positives = 172/305 (56%), Gaps = 10/305 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VL+GG+S+ER+VSL +G+A + AL   G+ V +IDV R +   LA  K D+A+  +HG
Sbjct: 18  VGVLLGGMSAERDVSLRTGEAVSGALRGLGYDVVEIDVGRDLPARLAAEKVDVAWLAVHG 77

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN----RF 116
            +GEDG +Q +LE L IPYT SG+LASAL MDK+ +KQV  + G+P              
Sbjct: 78  RYGEDGCLQGLLESLFIPYTGSGVLASALGMDKVYAKQVYVAHGIPTPAYRSFKDAASAL 137

Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
                     P V+KP + GSS+G+ + K   +    +  ++   +   LL+EQ+V G E
Sbjct: 138 AAADSLPFPFPVVVKPSREGSSVGVHICKTRDAYEAAVTDAA--KYAGTLLVEQFVKGRE 195

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL-NSTHVLPAKIPLDIYKEVQRLAFLAH 235
           +  GV+ D +L V E+   + +FY Y+ KY +   + ++ PA +P D Y  V  +   AH
Sbjct: 196 VQGGVLDDEALGVIEVRAAR-EFYDYDAKYKAGTGTQYLFPAPLPPDQYARVNEVCLAAH 254

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           QA+GC G SRSD +       VF LE N  PGMT  S+ P++AA  G  F  L   ++  
Sbjct: 255 QALGCSGGSRSDVIVT-DGGDVFLLETNTLPGMTASSLLPKIAAGRGIDFPALCERLLLG 313

Query: 296 ASCLR 300
           A CL+
Sbjct: 314 A-CLK 317


>gi|254786995|ref|YP_003074424.1| D-alanine--D-alanine ligase B [Teredinibacter turnerae T7901]
 gi|237685827|gb|ACR13091.1| D-alanine--D-alanine ligase B [Teredinibacter turnerae T7901]
          Length = 317

 Score =  323 bits (830), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 98/295 (33%), Positives = 153/295 (51%), Gaps = 6/295 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+ER+VSL SG+A A+ L + G  + ++D+       +     D AF  LHG
Sbjct: 19  VAVLYGGTSAERDVSLKSGRAVANGLREQGIDILELDIGNQGVAQILAATFDRAFIALHG 78

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG VQA+L+LL IP+T S   ASA++MDK+++KQ+  S  +P     ++      +
Sbjct: 79  EGGEDGKVQALLQLLGIPFTGSLHTASAIAMDKLKTKQIWLSASLPTPDYRVLQSSDDFA 138

Query: 121 QHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
             L  +     +KP+  GSS+G+      + +      +  +    ++  E  V G E T
Sbjct: 139 ACLQALGGSVFVKPVHEGSSIGMTCANNKEELKAAFEAAEKF--DSEVFAESTVVGREFT 196

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             ++G+  L   E+ +P + FY Y+ KY S  + ++ P  +  D  KE+  LA  + + I
Sbjct: 197 VAILGETVLPPIEL-LPSNRFYDYDAKYISNETRYLCPCNLTPDKNKELCELALKSFKMI 255

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           GC G  R D L D        LE+N  PGMT  S+ P  A   G +F EL+  ++
Sbjct: 256 GCSGWGRVDALQDEAGN-FHLLEVNTVPGMTDHSLVPMAARAVGLNFSELVAEIL 309


>gi|157803467|ref|YP_001492016.1| D-alanine--D-alanine ligase [Rickettsia canadensis str. McKiel]
 gi|189083046|sp|A8EXZ8|DDL_RICCK RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|157784730|gb|ABV73231.1| D-alanylalanine synthetase [Rickettsia canadensis str. McKiel]
          Length = 354

 Score =  323 bits (830), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 119/297 (40%), Positives = 187/297 (62%), Gaps = 3/297 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +A++ GG+S+EREVSL S K  + AL   G+KV+ ID+   +   L  +KPD+ FN LHG
Sbjct: 58  IALVAGGMSAEREVSLVSSKGVSKALIALGYKVTFIDMGADIAFKLQEIKPDIVFNCLHG 117

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG +  +L ++ IPYTHSG+L+SAL+ DK+ S+    +  + +  SI+VN+     
Sbjct: 118 TYGEDGCLSGLLNIMRIPYTHSGVLSSALAFDKIYSRSWFLTNNINMAESIVVNKSDNIK 177

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  PYVIKP+  GSS+GI VI ++         +  + +GDQ++IE+Y+ G EL   
Sbjct: 178 IEPMKRPYVIKPITQGSSIGIEVIFEEDDFNFA---NYDFPYGDQVIIEKYIKGRELQVA 234

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V+   +L V EI + K+ FY YE KY+   + H+ PA IP ++Y ++   +   ++ + C
Sbjct: 235 VLNGKALGVLEIKLLKNRFYDYETKYTEGFAEHLCPAPIPTNLYDKLLIESEKIYKTMNC 294

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           +G +R +FL +  + K++ LEIN  PGMTP+SI PE+AAYAG +F  L+  +++ AS
Sbjct: 295 KGPARVEFLLEDQTNKLYALEINTHPGMTPLSIVPEIAAYAGINFTNLIEEIIKAAS 351


>gi|83589988|ref|YP_429997.1| D-alanine--D-alanine ligase [Moorella thermoacetica ATCC 39073]
 gi|123524583|sp|Q2RJD5|DDL_MOOTA RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|83572902|gb|ABC19454.1| D-alanine--D-alanine ligase [Moorella thermoacetica ATCC 39073]
          Length = 309

 Score =  323 bits (830), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 110/308 (35%), Positives = 171/308 (55%), Gaps = 16/308 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSERE+SL SG A A+AL   G +V  ID++R V   L +  PD+ FN LHG
Sbjct: 3   IAVLMGGPSSEREISLKSGSAVAAALSGLGHQVITIDLNREVVARLKNFAPDVVFNALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG VQ +LE+L +PYT S +LASA++MDK+ +K+V+   G+P    +        +
Sbjct: 63  KPGEDGSVQGLLEVLGLPYTGSRVLASAITMDKIMTKRVLLQAGIPTPKFLAWTGAEYAT 122

Query: 121 QHL---------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P VIK    GS++G  +++++  +   +  + +  +    + E Y
Sbjct: 123 GKKEIKAAILKELGLPVVIKAPTQGSTIGTFIVREEGELEPAI--AGALKYDLSFMAEAY 180

Query: 172 VDGIELTCGVMGDA---SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           + G E+T  V+G+     L + EI V  + FY Y+ KY+   S H++P ++P D+     
Sbjct: 181 LAGPEITAAVLGNRKPQVLPLIEI-VSHTGFYDYQAKYTPGLSDHIIPPRLPDDVLAAAT 239

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
            LA   +  +GCRG +R DF+     R+   +E+N  PGMT  S+ P+ A  AG  F +L
Sbjct: 240 SLAGRTYALLGCRGFARVDFIV-AGGREPQVIEVNSVPGMTATSLVPDAARAAGLDFPDL 298

Query: 289 LLWMVEDA 296
           +  +V+ A
Sbjct: 299 VQKIVDLA 306


>gi|89095257|ref|ZP_01168178.1| D-alanylalanine synthetase [Oceanospirillum sp. MED92]
 gi|89080464|gb|EAR59715.1| D-alanylalanine synthetase [Oceanospirillum sp. MED92]
          Length = 315

 Score =  323 bits (830), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 96/303 (31%), Positives = 153/303 (50%), Gaps = 11/303 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-----DRSVGLVLAHLKPDLAF 55
           +AV+ GG SSER VSL SG A   AL  AG     ID+          + L     D AF
Sbjct: 16  VAVIYGGNSSERSVSLKSGAAVLGALSRAGVDAFGIDLYGEDGTEQPLVQLQRENFDRAF 75

Query: 56  NVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR 115
            +LHG  GEDG +Q  L++L  PYT SG+ ASA+ MDK+R+K +     +P  P  ++ +
Sbjct: 76  LILHGPVGEDGTLQGALDMLGKPYTGSGVAASAIGMDKLRTKLIWLGHNIPTPPFAVIEQ 135

Query: 116 FT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
                +    +  P ++KP   GSS+G+  +   + +   L  ++   +   ++ E ++ 
Sbjct: 136 GQDLAEVAERLKWPMIVKPAHEGSSIGMSKVSSQKELEAALGTAA--EYDRTVIAESWMS 193

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           G E T  ++   +L   ++    + FY ++ KY + ++ +     +  +   E++RLA  
Sbjct: 194 GGEYTVAILDGQALPPIQLITDHA-FYDFDAKYVANDTQYRFDLDLTSEQTDELKRLAEK 252

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           A  A+GCRG  R D + D        LE+N  PGMT  S+ P  A  AG SF EL++ ++
Sbjct: 253 AFSAVGCRGWGRVDAMRDECGN-FQLLEVNTAPGMTDHSLVPMAAKEAGISFEELVVEIL 311

Query: 294 EDA 296
             A
Sbjct: 312 RTA 314


>gi|169634769|ref|YP_001708505.1| D-alanine--D-alanine ligase [Acinetobacter baumannii SDF]
 gi|229485850|sp|B0VNZ7|DDL_ACIBS RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|169153561|emb|CAP02733.1| D-alanine-D-alanine ligase B [Acinetobacter baumannii]
          Length = 308

 Score =  323 bits (830), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 100/298 (33%), Positives = 154/298 (51%), Gaps = 8/298 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+ER VSL SG+A   AL  +G +    D        L  +  D AF VLHG
Sbjct: 10  VAVLLGGKSAERAVSLDSGQAVLDALLRSGVQAEAFDPQDRSVTEL--VNYDRAFIVLHG 67

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LE L IPYT +G+  SA+ MDK+++KQ+     +P  P  ++ + T   
Sbjct: 68  RGGEDGQIQGVLEWLNIPYTGTGVQGSAIGMDKVKTKQIWQGSDLPTAPYRIITKETDLD 127

Query: 121 Q--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                +  P +IKP+  GSS+G+  ++K +     + +++   H   ++ E+++ G E T
Sbjct: 128 SVIAELGLPVIIKPVHEGSSVGMSKVEKAEDFAAAIEKAT--QHDAVVMAEKWITGREFT 185

Query: 179 CGVMGDASLDVTEIAVP-KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
              +    L V  +  P    FY YE KY   +  + +P  +     K++Q L   A QA
Sbjct: 186 ISFLNGQPLPVIRLQPPADVAFYDYEAKYQRNDVEYGIPCGLSETEEKKLQALCLRAFQA 245

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           +G  G  R D + D      + LE+N  PGMT  S+ P+     GYSF EL + ++E 
Sbjct: 246 VGAEGWGRIDAMQDEQGN-FWLLEVNTVPGMTSHSLVPKATKAVGYSFDELCVAILEQ 302


>gi|308172324|ref|YP_003919029.1| D-alanyl-D-alanine ligase A [Bacillus amyloliquefaciens DSM 7]
 gi|307605188|emb|CBI41559.1| D-alanyl-D-alanine ligase A [Bacillus amyloliquefaciens DSM 7]
 gi|328552135|gb|AEB22627.1| D-alanyl-alanine synthetase A [Bacillus amyloliquefaciens TA208]
 gi|328910407|gb|AEB62003.1| D-alanyl-D-alanine ligase A [Bacillus amyloliquefaciens LL3]
          Length = 361

 Score =  323 bits (830), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 88/346 (25%), Positives = 151/346 (43%), Gaps = 53/346 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           + ++ GG S+E  VSL +  A   AL    F +  I +                      
Sbjct: 5   LGLVYGGKSAEHNVSLQTALAVTKALNTDKFDIHPIYITEKGEWQRGPLLTEPVSNVKML 64

Query: 47  -------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81
                                         D+ F +LHG  GEDG +Q +LELL +PY  
Sbjct: 65  QLEQNGESFALSALNREMFPEASADEKAPIDVVFPLLHGPNGEDGTIQGLLELLNVPYVG 124

Query: 82  SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKP 132
           +G+LAS+  MDK+  K + +  G+P        +              +  +  P  +KP
Sbjct: 125 NGVLASSAGMDKVIMKHLFAQAGLPQAKYAAFLKKDWKQTPDSCLQQVEEELGYPCFVKP 184

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192
              GSS+GI   +  + +        ++ +  ++++E+ + G E+  GV+G+     + +
Sbjct: 185 ANLGSSVGISKCRNREELEKAF--ELAFEYDRKIVVEEGIAGREIEIGVLGNDEPKCSAV 242

Query: 193 AV--PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
               PK+DFY Y+ KY   ++  ++PA++  + Y E+  +A  A +AI   G+ R+DF  
Sbjct: 243 GEIAPKTDFYDYKAKYEDGDTDLMIPAQVTDEQYAEISEMAIKAFKAIDGSGLVRADFFL 302

Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                +V   E+N  PG TP S+FP +   AG  + +L+  +VE A
Sbjct: 303 TN-DGQVLINEVNTMPGFTPFSMFPLLWKEAGVDYSDLIEQLVELA 347


>gi|238752433|ref|ZP_04613910.1| D-alanine--D-alanine ligase [Yersinia rohdei ATCC 43380]
 gi|238709366|gb|EEQ01607.1| D-alanine--D-alanine ligase [Yersinia rohdei ATCC 43380]
          Length = 287

 Score =  323 bits (829), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 97/288 (33%), Positives = 153/288 (53%), Gaps = 13/288 (4%)

Query: 18  SGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEI 77
           SG+A  + L +AG     ID        L     D  F  LHG  GEDG +Q +LE L++
Sbjct: 3   SGQAVLAGLREAGIDAHGIDTKDFPVTELKAQGFDKVFIALHGRGGEDGTLQGVLEFLQL 62

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD---------SQHLISPPY 128
           PYT SG++ASAL+MDK+R+K V  + G+P+ P + +NR   +         S   +  P 
Sbjct: 63  PYTGSGVMASALTMDKLRTKLVWQASGLPISPYVALNRQQFETLSSEELSASVAKLGLPL 122

Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD 188
           ++KP   GSS+G+  + K   +   L++  ++ H   +LIE+++ G E T  ++GD  L 
Sbjct: 123 IVKPSHEGSSVGMSKVDKISELQGALVE--AFRHDTDVLIEKWLSGPEFTVAILGDEVLP 180

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
              I  P   FY YE KY S  + +  P+ +  ++ +++  L+  A+QA+GC G  R D 
Sbjct: 181 SIRIQAP-GVFYDYEAKYLSDETQYFCPSGLSAELEQQLAALSLQAYQALGCSGWGRVDV 239

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           + D      + LE+N  PGMT  S+ P  A  +G SF +L+  ++  A
Sbjct: 240 MQD-SDGSFYLLEVNTSPGMTSHSLVPMAARQSGLSFSQLVARILTLA 286


>gi|146310511|ref|YP_001175585.1| D-alanyl-alanine synthetase A [Enterobacter sp. 638]
 gi|145317387|gb|ABP59534.1| D-alanine--D-alanine ligase [Enterobacter sp. 638]
          Length = 366

 Score =  323 bits (829), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 89/348 (25%), Positives = 160/348 (45%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           + ++ GG S+E EVSL S K    A++ + F V  + +D+     +              
Sbjct: 6   VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVNDASQYLLNADDPA 65

Query: 50  --------------------------------KPDLAFNVLHGNFGEDGLVQAILELLEI 77
                                           + D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  HIALNPSEISVATVPGVIHGQLINAGNAQTLAQIDVIFPIVHGTLGEDGSLQGMLRMANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ------HLISPPYVIK 131
           P+  S +L SA  MDK  +K+++   G+ + P + + R   D          +  P  +K
Sbjct: 126 PFVGSDVLGSAACMDKDVTKRLLRDAGLNIAPFVTLTRANRDQHSFAQITAQLGLPLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  +  +      +  +  ++H  ++++EQ + G E+ C V+G+     + 
Sbjct: 186 PANQGSSVGVSKVTSEAQFADAVRLAFEFDH--KVVVEQGIKGREIECAVLGNDFPQAST 243

Query: 192 I--AVPKSDFYSYELKYSSL-NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               V  SDFYSY+ KY     +  V+PA +  +I  +++ +A  A+QA+GC G++R D 
Sbjct: 244 CGEVVLNSDFYSYDTKYIDDKGAQVVVPAVLDPEINDKIRAIAIEAYQALGCGGMARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                   V   EIN  PG T +S++P++   +G S+ EL+  ++E A
Sbjct: 304 FLTA-ENDVIINEINTLPGFTNISMYPKLWQASGISYPELITRLIELA 350


>gi|304315733|ref|YP_003850878.1| D-alanine/D-alanine ligase [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302777235|gb|ADL67794.1| D-alanine/D-alanine ligase [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 361

 Score =  323 bits (829), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 98/347 (28%), Positives = 165/347 (47%), Gaps = 53/347 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           +AVL GG S E EVS  S  +  + ++   + V  + + +     L +            
Sbjct: 6   VAVLFGGQSGEHEVSRVSATSIINNIDRDKYDVYMVGITKKGEWYLYNGDIEKIATGEWE 65

Query: 50  ----------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81
                                         D+ F VLHG  GEDG VQ +LELLE+PY  
Sbjct: 66  KDAVPALIGPSTKYKGILAFKDSRYEFYPIDVVFPVLHGPNGEDGTVQGLLELLEMPYVG 125

Query: 82  SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH----------LISPPYVIK 131
             +L+S+L MDK+ SK++    G+P     +V R  +++             I  P  +K
Sbjct: 126 PNVLSSSLCMDKVFSKRIFLEAGIPTPKFTVVYRKELNNVDNYEEIRRRVSEIGYPCFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT- 190
           P   GSS+GI  +  +  +   L  +S   +  +++IE+ +D  E+ C V+G+ + + + 
Sbjct: 186 PANMGSSVGITKVHNENELMDGLKLAS--KYDRKIIIEEGIDAREIECSVLGNDNPEASI 243

Query: 191 -EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
               VP  +FY Y+ KY    S   +PA IP    +E++ LA  A+ A+  RG++R DFL
Sbjct: 244 AGEIVPAHEFYDYDAKYFDEASKLFIPAPIPDVKMEEIRELAIKAYIALDVRGMARVDFL 303

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            D  + KV+  E+N  PG T +S++P++   +G  + +L+  +++ A
Sbjct: 304 MDKNTGKVYLNELNTIPGFTKISMYPKLWEASGKPYSKLIDDLIQLA 350


>gi|320355011|ref|YP_004196350.1| D-alanine--D-alanine ligase [Desulfobulbus propionicus DSM 2032]
 gi|320123513|gb|ADW19059.1| D-alanine--D-alanine ligase [Desulfobulbus propionicus DSM 2032]
          Length = 315

 Score =  323 bits (829), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 107/305 (35%), Positives = 171/305 (56%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLA-HLKPDLAFNVLH 59
           +A++ GG S EREVSL        AL+   ++V + D    +  + A     D+AF +LH
Sbjct: 6   LALIAGGTSDEREVSLRGAAGVEQALDPDKYEVVRYDPATDLAKIAADAAHIDVAFLLLH 65

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G  GEDG +Q  L+LL IPY  +G+L SAL+MDK  +K +    G+PV P ++V    + 
Sbjct: 66  GVHGEDGTIQGFLDLLGIPYQGAGVLGSALAMDKHLAKTMYKLHGLPVAPWVMVEAGDLA 125

Query: 120 SQHLI----SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175
               I      P V+KP++ GSS+G+ ++++ + +P  L  +    H +++++E Y+ G 
Sbjct: 126 DTRRIVTEVGLPCVVKPVRQGSSIGMSIVREKEQLPAALRLAL--RHDNEVMVEAYIKGR 183

Query: 176 ELTCGVMGDA---SLDVTEIAV-PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           ELT GV+G+A   +L + EI    + +F+ YE KY    S  + PA +  ++ ++ Q  A
Sbjct: 184 ELTAGVLGNAELTALPLIEIIPDARYEFFDYEAKYQPGASKEICPAPVSDEVRQKAQAYA 243

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             AH+++  RG SR+D +      +++ LE N  PGMTP S+ P+ AA AG  F  LL  
Sbjct: 244 MEAHRSLQLRGYSRTDMIL--AGDELYLLETNTIPGMTPTSLLPQAAAEAGIPFAALLDR 301

Query: 292 MVEDA 296
           +V  A
Sbjct: 302 LVALA 306


>gi|188584653|ref|YP_001916198.1| D-alanine--D-alanine ligase [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|229485967|sp|B2A2Z6|DDL_NATTJ RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|179349340|gb|ACB83610.1| D-alanine--D-alanine ligase [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 365

 Score =  323 bits (829), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 97/348 (27%), Positives = 162/348 (46%), Gaps = 51/348 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44
           + VL GG S E EVSL S  +  +AL+   F+V  I + ++                   
Sbjct: 6   VGVLFGGRSGEHEVSLKSANSILNALDRELFEVIPIGIRKNGEWISGEAPLEELETGIKN 65

Query: 45  ---------------VLAHLKP-------DLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
                          VL  L P       DL F VLHG FGEDG VQ  L+L  IPY  S
Sbjct: 66  QGNYAVSILPDPSKKVLWKLDPFEKISEIDLIFPVLHGTFGEDGTVQGFLDLCGIPYVGS 125

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPL 133
           G+L S+L+MDK+  K+++   G+ V       R   +          +  +S P  +KP 
Sbjct: 126 GVLGSSLAMDKVMMKKILRRHGLQVANYYSFKRSEWEQDRDEIIFSIEKQLSYPIFVKPA 185

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--DVTE 191
             GSS+GI  +K  + +   +  +  ++   + L E+++ G E+   ++G+ +    V  
Sbjct: 186 NLGSSVGISKVKNREELIQGIDLAVKYDM--KCLAEEFIPGKEIELSILGNDNPKTSVPG 243

Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
             +P ++FY Y  KY +  S  V+PA +   +  +++ +   A + + C G+SR D+   
Sbjct: 244 EIIPANEFYDYNAKYINNKSKLVIPAPLSETLKTKIEDMGVEAFRVLDCYGLSRVDYFVL 303

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
               +V+  EIN  PG T +S++P++   +G S+ +LL  ++  A   
Sbjct: 304 EDQEEVYINEINTMPGFTEISMYPKLWTESGLSYSQLLTDLIYLALAR 351


>gi|33151977|ref|NP_873330.1| D-alanine--D-alanine ligase [Haemophilus ducreyi 35000HP]
 gi|39930851|sp|Q7VMY2|DDL_HAEDU RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|33148199|gb|AAP95719.1| D-alanine-D-alanine ligase B [Haemophilus ducreyi 35000HP]
          Length = 303

 Score =  323 bits (829), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 101/298 (33%), Positives = 163/298 (54%), Gaps = 9/298 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S EREVSL SG A   AL+  G+ V  ID        L        FN+LHG
Sbjct: 8   IAVLYGGTSQEREVSLHSGAAVTEALKSLGYNVEGIDTKDIAIEKLKEKGIQRVFNILHG 67

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GE+G++Q  LE + IPYT  G++ASA+++DK R+K + ++ G+P    ++V R     
Sbjct: 68  GIGENGVLQGALEQMGIPYTGCGVMASAITLDKFRTKLLWNAVGLPTADMVVVQRGQAID 127

Query: 121 ----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
                  +S P  +KP   GSS+G+  +K  + +   +  +++      +L+E+++ G E
Sbjct: 128 INQIIAKLSLPVFVKPSSEGSSVGVFKVKTKEELLPAI--TAALEFDTIVLVEEFLTGAE 185

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
            +  V+    L   +I +P  +FY Y  KY S  + +++PA +  +   EV ++   A+ 
Sbjct: 186 YSVPVLDGEVLPAVQI-IPDGEFYDYHAKYLSDKTQYIVPA-LTNERQAEVAKIVKAAYD 243

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            +GCRG SR D + +  ++    +E+N  PGMT  SIFP+ AA  G SF +L+  ++E
Sbjct: 244 VVGCRGWSRIDVM-EDQNQNFRLVEVNTNPGMTSHSIFPKSAATMGISFEKLVERVLE 300


>gi|167630619|ref|YP_001681118.1| d-alanine--d-alanine ligase, putative [Heliobacterium modesticaldum
           Ice1]
 gi|190359140|sp|B0TAZ6|DDL_HELMI RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|167593359|gb|ABZ85107.1| d-alanine--d-alanine ligase, putative [Heliobacterium modesticaldum
           Ice1]
          Length = 366

 Score =  323 bits (829), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 99/343 (28%), Positives = 155/343 (45%), Gaps = 51/343 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           +AV+ GG S E EVSL+S ++   AL+   F V  I +DR     L              
Sbjct: 6   IAVICGGRSGEHEVSLTSAQSIVDALDRFRFNVLTIGIDRHGAWWLGSNVIDNLRKGQQP 65

Query: 47  ------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
                                     +  D+ F VLHG  GEDG +Q + E   +PY   
Sbjct: 66  YGQRVYFIPDPTCPGLIEENPVTRKPVPVDVFFPVLHGPNGEDGTIQGLFEAANVPYVGC 125

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPL 133
           G+LASA  MDK   K + +   +P  P ++V R   +S         +  +  P  +KP 
Sbjct: 126 GVLASACGMDKAIMKALFAQSDLPQLPYLVVLRNRWESAREQVIDEVEDRLGYPCFVKPA 185

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--DVTE 191
             GSS+GI        +      +    +  +L++E+ ++  E+   V+G+  +   V  
Sbjct: 186 NMGSSVGISKATNRAELVAAFDDAV--RYDRKLIVEKGINVREIEVSVLGNDEVVASVPG 243

Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
             VP  +FY Y+ KY++ +S  ++PA I        Q +A  A +AI   G+SR DFL D
Sbjct: 244 EIVPAHEFYDYDAKYAAADSRLLIPAPIAAADVATFQEMAIRAFRAIDGSGLSRVDFLLD 303

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             S +V+  EIN  PG T +S++P++    G  + ELL  +V+
Sbjct: 304 KNSGEVYINEINTLPGFTSISMYPKLWEATGIPYGELLSRLVD 346


>gi|303251842|ref|ZP_07338013.1| D-alanine--D-alanine ligase [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|307249143|ref|ZP_07531150.1| D-alanine--D-alanine ligase [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|302649272|gb|EFL79457.1| D-alanine--D-alanine ligase [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|306854431|gb|EFM86627.1| D-alanine--D-alanine ligase [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
          Length = 303

 Score =  323 bits (829), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 101/301 (33%), Positives = 163/301 (54%), Gaps = 9/301 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG+S EREVSL+SG A   AL+  G+ V  ID        L        FN+LHG
Sbjct: 8   IAVLFGGVSQEREVSLNSGAAVTEALKSLGYNVEGIDTKDFPIEKLKEKGIQRVFNILHG 67

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GE+G++Q  LE + IPYT  G++ASA+++DK R+K +  +  +P    ++V R     
Sbjct: 68  GIGENGVLQGALEQMGIPYTGCGVMASAVTLDKFRTKLMWQAVDLPTADMVVVRRGEAVD 127

Query: 121 QH----LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
                  +  P  +KP   GSS+G+  +K  + +   + ++  +     +L+E ++ G E
Sbjct: 128 SEQIIAKLGLPVFVKPSSEGSSVGVTKVKTVEQLLPAVEEALKF--DSIVLVEAFLAGKE 185

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
            +  V+    L   +I +P+ +FY Y  KY S N+ +++PA +  D   EV  L   A++
Sbjct: 186 YSVPVLDGQVLPAVQI-IPEGEFYDYHAKYISDNTQYLVPA-LSDDRQAEVAELVKAAYE 243

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            +GCRG SR D + +  +     +E+N  PGMT  SIFP+ AA  G  F +L+  ++E +
Sbjct: 244 VVGCRGWSRIDVM-EDANGNFNLVEVNTCPGMTSHSIFPKSAATVGIPFEKLVERVLELS 302

Query: 297 S 297
           +
Sbjct: 303 A 303


>gi|299768393|ref|YP_003730419.1| D-alanine--D-alanine ligase [Acinetobacter sp. DR1]
 gi|298698481|gb|ADI89046.1| D-alanine--D-alanine ligase [Acinetobacter sp. DR1]
          Length = 308

 Score =  323 bits (829), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 99/298 (33%), Positives = 152/298 (51%), Gaps = 8/298 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+ER VSL SG+A   AL  +G +    D        L  +  D AF VLHG
Sbjct: 10  VAVLFGGKSAERAVSLDSGQAVLDALLRSGVQAEAFDPQDRSVTEL--VNYDRAFIVLHG 67

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LE L +PYT +G+  SA+ MDK+++KQ+     +P  P  ++ + T   
Sbjct: 68  RGGEDGQIQGVLEWLNLPYTGTGVQGSAIGMDKVKTKQIWQGSDLPTAPYRIITKETDLD 127

Query: 121 Q--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                +  P +IKP+  GSS+G+  ++K +     + +++   H   ++ E+++ G E T
Sbjct: 128 AVIAELGLPVIIKPVHEGSSVGMSKVEKAEDFAAAIEKAT--QHDAVVMAEKWITGREFT 185

Query: 179 CGVMGDASLDVTEIAVP-KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
              +    L V  +  P    FY YE KY   +  + +P  +     K +Q L   A QA
Sbjct: 186 ISFLNGQPLPVIRLQPPADVAFYDYEAKYQRNDVEYGIPCGLSETEEKNLQALCLRAFQA 245

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           +G     R D + D      + LE+N  PGMT  S+ P+ A   GYSF EL + ++E 
Sbjct: 246 VGAESWGRIDAMQDEQGN-FWLLEVNTVPGMTSHSLVPKAAKAVGYSFDELCVAILEQ 302


>gi|168185902|ref|ZP_02620537.1| D-alanine--D-alanine ligase [Clostridium botulinum C str. Eklund]
 gi|169295873|gb|EDS78006.1| D-alanine--D-alanine ligase [Clostridium botulinum C str. Eklund]
          Length = 343

 Score =  323 bits (829), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 95/335 (28%), Positives = 165/335 (49%), Gaps = 41/335 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44
           +A+L GG S+E EVS  S  +    ++ + + V  I + +                    
Sbjct: 5   VAILFGGQSTEHEVSRISASSVLKNIDLSKYDVYPIGITKDGRWFEYTGDIDKIESGEWE 64

Query: 45  ------------VLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
                       +L + + D+ F V+HG +GEDG +Q + +LL IP    G++ASA+ MD
Sbjct: 65  KDEFYKNPNGQEILFNREVDVVFPVMHGLYGEDGTIQGLCKLLNIPCVGPGVMASAVCMD 124

Query: 93  KMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSLGIIV 143
           K+ +K V+ + GV     ++VN     +         ++ +     IKP   GSS+GI  
Sbjct: 125 KVYTKYVLENFGVKQADYVVVNAHDYKNKKTDIISTIENKLGYDVFIKPSNSGSSVGISK 184

Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV--TEIAVPKSDFYS 201
               Q +   L ++  ++   ++L+E  ++  E+   V+G+           VP ++FY 
Sbjct: 185 AHNRQELESGLEEALKFDR--KVLVEVALNAREIEVAVLGNDEPMAATPGEIVPANEFYD 242

Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
           YE KYS+  S  +LPA + L+  ++V+ LA    + + C G+SR DFL D  + +V+  E
Sbjct: 243 YEAKYSNAQSKLLLPANLSLEKLEKVKELAVKIFKMLDCAGMSRVDFLVDKETEEVYLNE 302

Query: 262 INVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           IN  PG T +S++P+M    G ++ EL+  ++E A
Sbjct: 303 INTIPGFTKISMYPKMWQAEGKAYGELISEIIELA 337


>gi|118581686|ref|YP_902936.1| D-alanine--D-alanine ligase [Pelobacter propionicus DSM 2379]
 gi|190359200|sp|A1AU58|DDL_PELPD RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|118504396|gb|ABL00879.1| D-alanine--D-alanine ligase [Pelobacter propionicus DSM 2379]
          Length = 310

 Score =  323 bits (829), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 123/299 (41%), Positives = 176/299 (58%), Gaps = 7/299 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG+S+EREVSL+SG A   AL   GF    +DV R + LVL+      AF  LHG
Sbjct: 9   IAVLMGGLSAEREVSLASGAAVCQALVARGFDALSVDVARDLPLVLSREGIGAAFIALHG 68

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG VQ +LEL+ IPYT SG+LASAL+M K+ SKQ   S G+   P     R    S
Sbjct: 69  RYGEDGCVQGLLELMAIPYTGSGVLASALAMHKLYSKQAFVSAGILTAPFHHFRRGERVS 128

Query: 121 QHLISP--PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
              +S   P V+KP++ GSS+GI ++K  +   L      ++ H D++L+EQ++ G E+ 
Sbjct: 129 LSHLSFGLPLVVKPVQEGSSVGISIVK--EESQLAAAVKLAFRHDDEILVEQFIKGQEVQ 186

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
            G++ D  +   EI V +++FY +E KY+   + H  PA++   +Y+E  R+   AH A+
Sbjct: 187 VGILDDRPMGAIEI-VSRNEFYDFEAKYTDGMAEHFFPARLEKGLYEEALRVGLAAHHAL 245

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPE-MAAYAGYSFRELLLWMVEDA 296
           GCR  SR D L  P   + + LE+N  PGMT +S+ PE  A  A   F EL+  ++  A
Sbjct: 246 GCRCYSRVDLLVTPA-GECYVLEVNTLPGMTALSLLPEIAAKGADLPFEELVERIILSA 303


>gi|325498332|gb|EGC96191.1| D-alanine-D-alanine ligase A [Escherichia fergusonii ECD227]
          Length = 370

 Score =  323 bits (828), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 88/348 (25%), Positives = 161/348 (46%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP- 51
           + ++ GG S+E EVSL S K    A++   F V  + +D+            +L    P 
Sbjct: 12  VGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGIDKQGQWHVSDAANYLLNADDPA 71

Query: 52  ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
                                             D+ F ++HG  GEDG +Q +L +  +
Sbjct: 72  RIALRPSATSLAQVPGKHEQQLIDAQTAQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 131

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLISPPYVIK 131
           P+  S +L SA  MDK  +K+++   G+ + P + + R         + +  +  P  +K
Sbjct: 132 PFVGSDVLGSAACMDKDVTKRLLRDAGLNIAPFVTLTRANRSTITFAEIEAQLGLPLFVK 191

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  +  +      +    ++ +  ++++E+ + G E+ C V+G+     + 
Sbjct: 192 PANQGSSVGVSKVTNEAEYKKAVDL--AFEYDHKVVVEKGIKGREIECAVLGNDHPQAST 249

Query: 192 IA--VPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               V  SDFY+Y+ KY   +    V+PA IP +I  +++ +A  A+Q +GC G++R D 
Sbjct: 250 CGEIVLNSDFYAYDTKYIDDDGAKVVVPAAIPAEINDKIREIAVKAYQTLGCAGMARVDV 309

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
               L   V   EIN  PG T +S++P++   +G S+ +L+  ++E A
Sbjct: 310 FLT-LENDVVINEINTLPGFTNISMYPKLWQASGLSYTDLITRLIELA 356


>gi|46578750|ref|YP_009558.1| D-alanine--D-alanine ligase [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|81567261|sp|Q72F80|DDL_DESVH RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|46448162|gb|AAS94817.1| D-alanine--D-alanine ligase [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|311232618|gb|ADP85472.1| D-alanine/D-alanine ligase [Desulfovibrio vulgaris RCH1]
          Length = 303

 Score =  323 bits (828), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 102/294 (34%), Positives = 158/294 (53%), Gaps = 5/294 (1%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-AHLKPDLAFNVLHGN 61
           ++ GG SSER+VSL+  +    AL   G  V+  D   S+  +L A    D AF  LHG+
Sbjct: 5   LIAGGWSSERDVSLAGARGIEKALCALGHDVTWFDPATSLDGLLEAASSHDFAFINLHGS 64

Query: 62  FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-ILVNRFTMDS 120
            GEDGLVQA+L+    PY  SG   S L+++K  SKQ++   G+       L  R   D 
Sbjct: 65  PGEDGLVQAMLDTAGCPYQGSGPAGSFLALNKAVSKQLLRRHGILTPDWAFLAARPAADW 124

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  +  P  +KP  GGSSL +  + + + +   L   + + H  + ++E  + G+E+TCG
Sbjct: 125 EPGLGYPLFVKPNTGGSSLCLSRVTQPEGLAPAL--EAVFAHCGEAIVEPAIPGVEVTCG 182

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V+GD +L    I   +  F+ Y  KY+   +T + PA +P ++   VQ +   AH+ +G 
Sbjct: 183 VLGDTALPPILIRPAEGAFFDYTSKYTPGGATELCPAPLPAEVTAHVQDVTLRAHRLLGL 242

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           RG SR+D++       +F LE+N  PGMTP S+ P+ AA  G  F  L+  ++E
Sbjct: 243 RGYSRADYILR-DDGALFLLEVNTLPGMTPTSLVPQEAAAIGLDFPALIARLIE 295


>gi|218289167|ref|ZP_03493403.1| D-alanine/D-alanine ligase [Alicyclobacillus acidocaldarius LAA1]
 gi|218240750|gb|EED07929.1| D-alanine/D-alanine ligase [Alicyclobacillus acidocaldarius LAA1]
          Length = 383

 Score =  323 bits (828), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 100/361 (27%), Positives = 163/361 (45%), Gaps = 67/361 (18%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP- 51
           + V+ GG S E EVSL S K+   AL+   +    I + +             L   +P 
Sbjct: 8   VGVIFGGKSGEHEVSLQSAKSVMDALDPLHYTTIPIGISKDGRWHVGKGAWKALEAKQPA 67

Query: 52  ---------------------------------------------DLAFNVLHGNFGEDG 66
                                                        D+ F VLHG FGEDG
Sbjct: 68  TLPSKGAQNTASPSKRFINPEIQGLSPVEVKRSPDWLPPALVNEIDVVFPVLHGTFGEDG 127

Query: 67  LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-------- 118
            +Q +LE++ IPY  SG+LASAL MDK+  KQ+ S+ G+P    +   R +         
Sbjct: 128 TIQGLLEMVGIPYVGSGVLASALGMDKIAMKQIFSAVGIPQARWVGFTRASWTQDDGRIV 187

Query: 119 -DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            + +  +  P  +KP   GSS+GI   +  + +   +  + S++   ++++E+ +D  E+
Sbjct: 188 REIEEQLGYPCFVKPANLGSSVGISKARNQRELVESVHLALSYDR--RVIVEEAIDAREI 245

Query: 178 TCGVMGDASL--DVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
             G++G+      V    VPK +FY YE KY    +   +PA +  +  K V+  A  A 
Sbjct: 246 EIGILGNDDPIASVAGEIVPKREFYDYEAKYQDGGAELRIPADLSPEERKAVESYAIRAF 305

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           QAI   G++R DF  +  + +V   EIN  PG T  S++P++   +G ++ +LL  ++E 
Sbjct: 306 QAIDGSGLARVDFFVERGTGRVLVNEINTMPGFTRFSMYPKLWEASGLAYDKLLDRLIEL 365

Query: 296 A 296
           A
Sbjct: 366 A 366


>gi|325923954|ref|ZP_08185544.1| D-alanine--D-alanine ligase [Xanthomonas gardneri ATCC 19865]
 gi|325545580|gb|EGD16844.1| D-alanine--D-alanine ligase [Xanthomonas gardneri ATCC 19865]
          Length = 318

 Score =  323 bits (828), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 109/302 (36%), Positives = 164/302 (54%), Gaps = 11/302 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG SSEREVSL+SG     AL   G     +D   ++   L   + D  FNVLHG
Sbjct: 19  VAVLLGGTSSEREVSLNSGSNVLDALRARGVDARPVDGIPAMAQALVEKRFDRVFNVLHG 78

Query: 61  --NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
               GEDG+VQ ++E  ++PYT S +L SALSMDK+R+KQV  S G+       +     
Sbjct: 79  HNGGGEDGIVQGLMEAFKVPYTGSNVLGSALSMDKIRTKQVWLSLGLCTPRYARLAAGAS 138

Query: 119 DSQ-----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
             Q       I  P ++KP   GSS+GI  +     +   ++ ++   +   LL+EQ ++
Sbjct: 139 ADQIHAAAQQIGLPVIVKPANEGSSVGISRVFDQAQLEEAVVLAA--RYDGALLMEQLIE 196

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           G ELT  V+G+ +L    I VPK  +Y Y  KY + ++ ++ P  +  D   ++++LA  
Sbjct: 197 GDELTVAVLGEVALPSIRI-VPKGQWYDYNAKYVADDTQYLCP-GLEGDAETQIRQLALD 254

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           A +A G RG  R D + D  S +++ LE+N  PGMT  S+ P+ A   G  F EL+  ++
Sbjct: 255 AFRAAGARGWGRVDVMRDRASGQLYLLEVNTAPGMTSHSLVPKAARQLGIDFEELVWRVL 314

Query: 294 ED 295
           E 
Sbjct: 315 EQ 316


>gi|110833461|ref|YP_692320.1| D-alanine--D-alanine ligase [Alcanivorax borkumensis SK2]
 gi|123345751|sp|Q0VS00|DDL_ALCBS RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|110646572|emb|CAL16048.1| D-alanine-D-alanine ligase B [Alcanivorax borkumensis SK2]
          Length = 307

 Score =  323 bits (828), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 103/296 (34%), Positives = 155/296 (52%), Gaps = 10/296 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+ER VSL SG A  + L + G     +D        L     D AF  LHG
Sbjct: 16  VAVLAGGRSAERAVSLKSGAAVHAGLRNLGLLAELVDPADKSVDTLR--GFDAAFIALHG 73

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG++Q +LE LEIPYT SG++ASA+ MDK+R+KQ+    G+P     +  R   + 
Sbjct: 74  RGGEDGVIQGVLEHLEIPYTGSGVMASAIGMDKVRTKQLWKGAGLPTPAFYVAGREEAE- 132

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P ++KP   GSS+G+      + +   L+ +  ++    +L+E +V+G E T  
Sbjct: 133 ---LGFPVIVKPAHEGSSIGMAKADNTEELGEALVAAEKFDQD--VLVEAWVNGPEYTVA 187

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V+GD +L    +  P   FY +E KY S ++ ++ PA +     + ++ LA  A +  GC
Sbjct: 188 VLGDEALPAIRLQTPHV-FYDFEAKYQSDSTEYLCPAGLDDADEQALRTLALTAFRVAGC 246

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           RG  R D + D    +   LE+N  PGMT  S+ P  A   G  F  L+  ++ DA
Sbjct: 247 RGWGRVDVMRDEQ-GQWQLLEVNTVPGMTDHSLVPMAAKATGRDFDVLVGEILLDA 301


>gi|218549957|ref|YP_002383748.1| D-alanine-D-alanine ligase A [Escherichia fergusonii ATCC 35469]
 gi|218357498|emb|CAQ90137.1| D-alanine-D-alanine ligase A [Escherichia fergusonii ATCC 35469]
          Length = 364

 Score =  323 bits (828), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 88/348 (25%), Positives = 161/348 (46%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP- 51
           + ++ GG S+E EVSL S K    A++   F V  + +D+            +L    P 
Sbjct: 6   VGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGIDKQGQWHVSDAANYLLNADDPA 65

Query: 52  ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
                                             D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  RIALRPSATSLAQVPGKHEQQLIDAQTAQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLISPPYVIK 131
           P+  S +L SA  MDK  +K+++   G+ + P + + R         + +  +  P  +K
Sbjct: 126 PFVGSDVLGSAACMDKDVTKRLLRDAGLNIAPFVTLTRANRSTITFAEIEAQLGLPLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  +  +      +    ++ +  ++++E+ + G E+ C V+G+     + 
Sbjct: 186 PANQGSSVGVSKVTNEAEYKKAVDL--AFEYDHKVVVEKGIKGREIECAVLGNDHPQAST 243

Query: 192 IA--VPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               V  SDFY+Y+ KY   +    V+PA IP +I  +++ +A  A+Q +GC G++R D 
Sbjct: 244 CGEIVLNSDFYAYDTKYIDDDGAKVVVPAAIPAEINDKIREIAVKAYQTLGCAGMARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
               L   V   EIN  PG T +S++P++   +G S+ +L+  ++E A
Sbjct: 304 FLT-LENDVVINEINTLPGFTNISMYPKLWQASGLSYTDLITRLIELA 350


>gi|172059551|ref|YP_001807203.1| D-alanine--D-alanine ligase [Burkholderia ambifaria MC40-6]
 gi|229463734|sp|B1YSS6|DDL_BURA4 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|171992068|gb|ACB62987.1| D-alanine--D-alanine ligase [Burkholderia ambifaria MC40-6]
          Length = 313

 Score =  323 bits (828), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 102/300 (34%), Positives = 158/300 (52%), Gaps = 11/300 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL+SG+     L DAG      D        L       AFN LHG
Sbjct: 12  VAVLFGGESAEREVSLTSGRLVLQGLRDAGIDAHPFDPAERPLSALKDEGFVRAFNALHG 71

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118
            +GE+G +Q  L+   I YT SG+L SAL +DK R+K V    GVP  P   V R     
Sbjct: 72  GYGENGQIQGALDFYGIRYTGSGVLGSALGLDKFRTKLVWQQTGVPTPPFETVMRGDDYA 131

Query: 119 ----DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD- 173
               D    +  P  +KP   GSS+ ++ +K   ++P  L +++   H   +++E+ ++ 
Sbjct: 132 ARATDIVAKLGLPLFVKPASEGSSVAVLKVKTADALPAALSEAA--THDKIVIVEKSIEG 189

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           G E T  + GD  L + +I VP  +FY Y  KY + ++ +++P  +P +   E++R+A  
Sbjct: 190 GGEYTACIAGDLDLPLIKI-VPAGEFYDYHAKYVANDTQYLIPCGLPAEQETELKRIARR 248

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           A   +GC    R+DF+ D      ++LE+N  PGMT  S+ P+ A   G  + EL++ ++
Sbjct: 249 AFDVLGCTDWGRADFMLDAAGNA-YFLEVNTAPGMTDHSLPPKAARSIGIGYSELVVKVL 307


>gi|307151246|ref|YP_003886630.1| D-alanine/D-alanine ligase [Cyanothece sp. PCC 7822]
 gi|306981474|gb|ADN13355.1| D-alanine/D-alanine ligase [Cyanothece sp. PCC 7822]
          Length = 377

 Score =  323 bits (828), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 95/343 (27%), Positives = 163/343 (47%), Gaps = 49/343 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDA----GFKVSQIDVDRSVGL--------VLAH 48
           + +L GG S E EVS++S KA A AL        +++  I + +            VL  
Sbjct: 32  VGLLFGGRSGEHEVSINSAKAIAKALSSETNATKYQLIPIYIRKDGCWQAPEIAQAVLES 91

Query: 49  LKP---------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87
            KP                     D+ F +LHG  GEDG +Q +L L+++PY  SG+L S
Sbjct: 92  GKPLSTESDDSVGLWQFPPSVNEVDVWFPILHGPNGEDGTLQGLLTLMQVPYVGSGVLGS 151

Query: 88  ALSMDKMRSKQVVSSCGVPVCPSILVNRFTM------------DSQHLISPPYVIKPLKG 135
           A+ MDK+  K      G+P  P + + R  +            + +  +  P  +KP   
Sbjct: 152 AVGMDKIAMKTAFKQAGLPQVPYMTLTRAQIWSNSCVFPKLGDEIEQTLGYPCFVKPANL 211

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195
           GSS+GI   +    +   L  ++S++   ++++E  V   E+ C V+G+ +   + +   
Sbjct: 212 GSSVGIAKARTRSELETALDAAASYDR--RIIVEAGVSAREVECAVLGNDNPKASIVGEI 269

Query: 196 --KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
              SDFY YE KY+   +  ++PA IP  I  ++Q ++  A  A+   G++R DF +   
Sbjct: 270 TFNSDFYDYETKYTDGRAQLLIPAPIPPQIAAQIQEMSLSAFAAVDAAGLARVDFFYVEK 329

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           + +V   EIN  PG T  S++P++   +G  F +L+  +++ A
Sbjct: 330 TGEVLINEINTLPGFTAFSMYPQLWEASGIQFPQLVDQLIQLA 372


>gi|332978064|gb|EGK14802.1| D-alanine-D-alanine ligase [Desmospora sp. 8437]
          Length = 367

 Score =  323 bits (828), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 96/346 (27%), Positives = 158/346 (45%), Gaps = 52/346 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44
           +AVL GG S E  VSL S  +   A++     V  + ++                     
Sbjct: 7   VAVLFGGKSGEHAVSLQSAASVIQAMDPEKMDVFPVLINPEGKWQPGEYALPALEGKMEP 66

Query: 45  -----------------------VLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81
                                  VL   + D+ F VLHG FGEDG +Q +LE+ +IPY  
Sbjct: 67  KLLEELGKRSTARDPLPVTTSLPVLKWEEIDVVFPVLHGTFGEDGTIQGMLEIADIPYVG 126

Query: 82  SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKP 132
           +G+LASA+ MDK+  K++ +  G+P        R  ++          +   + P  +KP
Sbjct: 127 AGVLASAVGMDKVMMKKIFAQEGLPQGDFTFCLRRAIEQDIDTVISGIEAEFAYPCFVKP 186

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--DVT 190
              GSS+GI   K  + +   L  ++   +  ++++E+++D  E+   V+G+      V 
Sbjct: 187 ANLGSSVGISKAKNREELKGALQLAA--RYDRKVIVEEFIDAREVEVAVLGNEEPVASVP 244

Query: 191 EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
              V  +DFY Y  KY    S   +PA +P  + +E+  LA  A+Q I C G++R DF  
Sbjct: 245 GEIVSSNDFYDYRAKYIDGKSEMRIPADLPEPVLEEISGLALKAYQGIDCSGLARVDFFI 304

Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                K+   EIN  PG TP S++  +  ++G S+ EL+  +++ A
Sbjct: 305 RKSDGKILINEINTMPGFTPFSMYANLWKHSGISYPELISRLIDLA 350


>gi|297250432|ref|ZP_06934039.1| D-alanine--D-alanine ligase B [Neisseria polysaccharea ATCC 43768]
 gi|296838890|gb|EFH22828.1| D-alanine--D-alanine ligase B [Neisseria polysaccharea ATCC 43768]
          Length = 343

 Score =  323 bits (828), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 104/299 (34%), Positives = 158/299 (52%), Gaps = 7/299 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSERE+SL SG A  +AL+  G      D   +    L       AFN+LHG
Sbjct: 46  VAVLMGGFSSEREISLDSGTAILNALKSKGIDAHAFDPKETPLSELKERGFQTAFNILHG 105

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--M 118
            +GEDG VQ  LELL IPYT SG+ ASA+ MDK R K +  + G+PV    +++  +   
Sbjct: 106 TYGEDGAVQGALELLGIPYTGSGVAASAIGMDKYRCKLIWQALGLPVPEFAVLHEDSDFD 165

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
             +  +  P  +KP   GSS+G++ +K+   +    +     +   +++ E+++ G E +
Sbjct: 166 AVEQQLGLPMFVKPAAEGSSVGVVKVKEKGRLKS--VYEELKHLQGEIIAERFIGGGEYS 223

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQA 237
           C V+    L    I +P ++FY YE KY+  ++ +  P   +       ++ LA    QA
Sbjct: 224 CPVLNGKGLPGIHI-IPATEFYDYEAKYNRDDTIYQCPSEDLTEAEESLMRELAVRGAQA 282

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           IG  G  R DF       K++ LEIN  PGMT  S+ P+ AA  G  F +L + +++ A
Sbjct: 283 IGAEGCVRVDF-LKDTDGKLYLLEINTLPGMTSHSLVPKSAAVTGVGFADLCIEILKTA 340


>gi|270260868|ref|ZP_06189141.1| D-alanine--D-alanine ligase A [Serratia odorifera 4Rx13]
 gi|270044352|gb|EFA17443.1| D-alanine--D-alanine ligase A [Serratia odorifera 4Rx13]
          Length = 367

 Score =  322 bits (827), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 94/348 (27%), Positives = 163/348 (46%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP- 51
           + V+ GG S+E EVSL S K    A++   F V+ + +D+            +L    P 
Sbjct: 6   VGVIFGGKSAEHEVSLQSAKNIVDAIDKEKFDVTLLGIDKQGQWHINDASNYLLNAENPA 65

Query: 52  ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
                                             D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  LIALNRSNKNVALIPGQEKQQLIEASSAGALGQLDVVFPIVHGTLGEDGSLQGLLRMANM 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVIK 131
           P+  +G+L SA+SMDK  +K+++   G+ V P + + R              +  P  IK
Sbjct: 126 PFVGAGVLGSAVSMDKDVTKRLLRDAGLAVAPFVTLTRTNRGKYGFDQLSERLGLPLFIK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  ++        L  + S++H  ++L+E  + G E+ C V+G+     + 
Sbjct: 186 PANQGSSVGVSKVQDRAGFDAALALAFSFDH--KVLVESAIVGREIECAVLGNDEPQASL 243

Query: 192 IA--VPKSDFYSYELKYSSL-NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               V    FYSY+ KY +   +  V+PA+I  ++  +++ +A  A +A+ C G++R D 
Sbjct: 244 CGEIVLSDAFYSYDTKYINEQGAKVVVPAEIAPEVSDKIRDVALKAFRALECFGLARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              P    V   EIN  PG T +S++P++ A +G S+ EL+  ++E A
Sbjct: 304 FLTP-DNNVVINEINTLPGFTNISMYPKLWAASGVSYSELITRLIELA 350


>gi|114321339|ref|YP_743022.1| D-alanine--D-alanine ligase [Alkalilimnicola ehrlichii MLHE-1]
 gi|123026549|sp|Q0A6K5|DDL_ALHEH RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|114227733|gb|ABI57532.1| D-alanine--D-alanine ligase [Alkalilimnicola ehrlichii MLHE-1]
          Length = 311

 Score =  322 bits (827), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 102/295 (34%), Positives = 157/295 (53%), Gaps = 8/295 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG S+ERE+SL SG+A   AL   G     +D  +     L     D AF  LHG
Sbjct: 12  VAVLMGGDSAEREISLISGRAVFEALRRRGVDAEAVDTAQVALAELT--GFDRAFIALHG 69

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG++Q  LE L +PYT SG+L  A+ MDK R+K +     +PV P  L+   T   
Sbjct: 70  RGGEDGVIQGALEALGVPYTGSGVLGCAIGMDKWRTKLLWRGAELPVPPGALLRPETNRQ 129

Query: 121 QHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
             +  +  P +IKP   GSS+G+  +++     L+  ++ +  + D +L E++++G E T
Sbjct: 130 ALIGSVGLPLMIKPAHEGSSIGMAKVERP--EELEAARAEAARYDDLVLAERWIEGGEYT 187

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             ++G+ +L    +  P+  FY +E KY S ++ +  PA +     +++++LA  A +  
Sbjct: 188 VAILGEEALPAIRLETPR-GFYDFEAKYRSGDTRYHCPAGLTEAEEQQIRQLALDAFRVA 246

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           G  G  R DF+ D   R  + LEIN  PGMT  S+ P  A   G  F EL   ++
Sbjct: 247 GASGWGRVDFMRDRQGR-FWLLEINTIPGMTDHSLVPMAARAVGIDFDELCWRIL 300


>gi|16759358|ref|NP_454975.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|16763760|ref|NP_459375.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|29142870|ref|NP_806212.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|167992222|ref|ZP_02573320.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|168232345|ref|ZP_02657403.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|168237486|ref|ZP_02662544.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|168261195|ref|ZP_02683168.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|168819018|ref|ZP_02831018.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|194446690|ref|YP_002039619.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194472780|ref|ZP_03078764.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|194735047|ref|YP_002113409.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197249513|ref|YP_002145360.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|200390819|ref|ZP_03217430.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|204926723|ref|ZP_03217925.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|213161233|ref|ZP_03346943.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Typhi str. E00-7866]
 gi|213427803|ref|ZP_03360553.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Typhi str. E02-1180]
 gi|213582565|ref|ZP_03364391.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-0664]
 gi|213622190|ref|ZP_03374973.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
 gi|213647649|ref|ZP_03377702.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Typhi str. J185]
 gi|289828466|ref|ZP_06546324.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-3139]
 gi|60392163|sp|P0A1F0|DDLA_SALTY RecName: Full=D-alanine--D-alanine ligase A; AltName:
           Full=D-Ala-D-Ala ligase A; AltName: Full=D-alanylalanine
           synthetase A
 gi|60392164|sp|P0A1F1|DDLA_SALTI RecName: Full=D-alanine--D-alanine ligase A; AltName:
           Full=D-Ala-D-Ala ligase A; AltName: Full=D-alanylalanine
           synthetase A
 gi|25293549|pir||AC0549 D-alanine,D-alanine ligase A [imported] - Salmonella enterica
           subsp. enterica serovar Typhi (strain CT18)
 gi|256032847|pdb|3I12|A Chain A, The Crystal Structure Of The D-Alanyl-Alanine Synthetase A
           From Salmonella Enterica Subsp. Enterica Serovar
           Typhimurium Str. Lt2
 gi|256032848|pdb|3I12|B Chain B, The Crystal Structure Of The D-Alanyl-Alanine Synthetase A
           From Salmonella Enterica Subsp. Enterica Serovar
           Typhimurium Str. Lt2
 gi|256032849|pdb|3I12|C Chain C, The Crystal Structure Of The D-Alanyl-Alanine Synthetase A
           From Salmonella Enterica Subsp. Enterica Serovar
           Typhimurium Str. Lt2
 gi|256032850|pdb|3I12|D Chain D, The Crystal Structure Of The D-Alanyl-Alanine Synthetase A
           From Salmonella Enterica Subsp. Enterica Serovar
           Typhimurium Str. Lt2
 gi|153943|gb|AAA27056.1| D-alanine:D-alanine ligase (EC 6.3.2.4) [Salmonella enterica subsp.
           enterica serovar Typhimurium]
 gi|16418883|gb|AAL19334.1| D-alanine-D-alanine ligase A [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|16501649|emb|CAD08835.1| D-alanine:D-alanine ligase A [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29138502|gb|AAO70072.1| D-alanine:D-alanine ligase A [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|194405353|gb|ACF65575.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194459144|gb|EDX47983.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|194710549|gb|ACF89770.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197213216|gb|ACH50613.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|197289552|gb|EDY28915.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|199603264|gb|EDZ01810.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|204323388|gb|EDZ08583.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|205329453|gb|EDZ16217.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|205333511|gb|EDZ20275.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|205344117|gb|EDZ30881.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|205349721|gb|EDZ36352.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|261245663|emb|CBG23459.1| D-alanine:D-alanine ligase A [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|267992083|gb|ACY86968.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
 gi|301156992|emb|CBW16475.1| D-alanine:D-alanine ligase A [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|312911411|dbj|BAJ35385.1| D-alanine--D-alanine ligase A [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
 gi|320084652|emb|CBY94443.1| D-alanine-D-alanine ligase A [Salmonella enterica subsp. enterica
           serovar Weltevreden str. 2007-60-3289-1]
 gi|321225102|gb|EFX50163.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. TN061786]
 gi|323128694|gb|ADX16124.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 4/74]
 gi|332987328|gb|AEF06311.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Typhimurium str. UK-1]
          Length = 364

 Score =  322 bits (827), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 86/348 (24%), Positives = 165/348 (47%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50
           + ++ GG S+E EVSL S K    A++   F V  + +D++    +   +          
Sbjct: 6   VGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGIDKAGQWHVNDAENYLQNADDPA 65

Query: 51  ---------------------------------PDLAFNVLHGNFGEDGLVQAILELLEI 77
                                             D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  HIALRPSAISLAQVPGKHQHQLINAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR------FTMDSQHLISPPYVIK 131
           P+  S +L+SA  MDK  +K+++   G+ + P I + R         + +  +  P  +K
Sbjct: 126 PFVGSDVLSSAACMDKDVAKRLLRDAGLNIAPFITLTRTNRHAFSFAEVESRLGLPLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  +  +      +  +  ++H  ++++EQ + G E+ C V+G+ +   + 
Sbjct: 186 PANQGSSVGVSKVANEAQYQQAVALAFEFDH--KVVVEQGIKGREIECAVLGNDNPQAST 243

Query: 192 IA--VPKSDFYSYELKYSSLN-STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               V  S+FY+Y+ KY   N +  V+PA+IP ++  +++ +A  A+Q +GC G++R D 
Sbjct: 244 CGEIVLNSEFYAYDTKYIDDNGAQVVVPAQIPSEVNDKIRAIAIQAYQTLGCAGMARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                  +V   EIN  PG T +S++P++   +G  + +L+  ++E A
Sbjct: 304 FLTA-DNEVVINEINTLPGFTNISMYPKLWQASGLGYTDLISRLIELA 350


>gi|261493994|ref|ZP_05990500.1| D-alanine--D-alanine ligase [Mannheimia haemolytica serotype A2
           str. BOVINE]
 gi|261496952|ref|ZP_05993319.1| D-alanine--D-alanine ligase [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|261307388|gb|EEY08724.1| D-alanine--D-alanine ligase [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|261310340|gb|EEY11537.1| D-alanine--D-alanine ligase [Mannheimia haemolytica serotype A2
           str. BOVINE]
          Length = 303

 Score =  322 bits (827), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 102/301 (33%), Positives = 167/301 (55%), Gaps = 9/301 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG+S EREVSL+SG A  +AL+  G+ V  ID        L        FN+LHG
Sbjct: 8   IAVLFGGVSQEREVSLNSGAAVTAALKSLGYNVEGIDTKEFPIEKLKEKGIQRVFNILHG 67

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GE+G++Q  LE + IPYT  G++ASA+++DK R+K + ++ G+P    ++V R  +  
Sbjct: 68  GIGENGVLQGALEQMGIPYTGCGVMASAVTLDKFRTKLLWNAVGLPTADMVVVQRGQVVD 127

Query: 121 ----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
                  +  P  +K    GSS+G+  +K  + +   + ++  +     +L+E+++ G E
Sbjct: 128 FDQIIAKLGLPVFVKSSCEGSSVGVFKVKTKEELAPAIHEALKF--DSIVLVEEFLAGNE 185

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
            +  V+    L   ++ +P  +FY Y  KY S N+ +V+PA +  +   EV +L   A+ 
Sbjct: 186 YSVPVLDGQVLPAVQV-IPDGEFYDYHAKYVSDNTQYVVPA-LNDERQAEVAKLVKAAYD 243

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            +GCRG SR D + +    K   +E+N  PGMT  SIFP+ AA  G SF +L+  ++E +
Sbjct: 244 VVGCRGWSRIDVM-EDGEGKFRLVEVNTNPGMTSHSIFPKSAATVGISFEKLVERVLELS 302

Query: 297 S 297
           +
Sbjct: 303 A 303


>gi|254362460|ref|ZP_04978568.1| D-alanine--D-alanine ligase [Mannheimia haemolytica PHL213]
 gi|153094052|gb|EDN74964.1| D-alanine--D-alanine ligase [Mannheimia haemolytica PHL213]
          Length = 303

 Score =  322 bits (827), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 102/301 (33%), Positives = 166/301 (55%), Gaps = 9/301 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG+S EREVSL+SG A  +AL+  G+ V  ID        L        FN+LHG
Sbjct: 8   IAVLFGGVSQEREVSLNSGAAVTAALKSLGYNVEGIDTKEFPIEKLKEKGIQRVFNILHG 67

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GE+G++Q  LE + IPYT  G++ASA+++DK R+K + ++ G+P    ++V R     
Sbjct: 68  GIGENGVLQGALEQMGIPYTGCGVMASAVTLDKFRTKLLWNAVGLPTADMVVVQRGQAVD 127

Query: 121 ----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
                  +  P  +K    GSS+G+  +K  + +   + ++  +     +L+E+++ G E
Sbjct: 128 FDQIIAKLGLPVFVKSSCEGSSVGVFKVKTKEELAPAIHEALKF--DSIVLVEEFLAGNE 185

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
            +  V+    L   ++ +P  +FY Y  KY S N+ +V+PA +  +   EV +L   A+ 
Sbjct: 186 YSVPVLDGQVLPAVQV-IPDGEFYDYHAKYVSDNTQYVVPA-LNDERQAEVAKLVKAAYD 243

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            +GCRG SR D + +    K   +E+N  PGMT  SIFP+ AA  G SF +L+  ++E +
Sbjct: 244 VVGCRGWSRIDVM-EDGEGKFRLVEVNTNPGMTSHSIFPKSAATVGISFEKLVERVLELS 302

Query: 297 S 297
           +
Sbjct: 303 A 303


>gi|15605989|ref|NP_213366.1| D-alanine:D-alanine ligase [Aquifex aeolicus VF5]
 gi|6225246|sp|O66806|DDL_AQUAE RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|2983164|gb|AAC06765.1| D-alanine:D-alanine ligase [Aquifex aeolicus VF5]
          Length = 291

 Score =  322 bits (827), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 100/294 (34%), Positives = 172/294 (58%), Gaps = 7/294 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VLMGG SSERE+SL +GKA A AL + G +V ++D+D+ +   L  +KPD  F  LHG
Sbjct: 3   VVVLMGGRSSEREISLKTGKAVAKALRELGHEVYELDLDKELPCKLLEIKPDKVFIALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL-VNRFTMD 119
            +GEDG VQ +LE+L+IPYT S  +ASA+S+DK  +K++V S G+        ++   + 
Sbjct: 63  RYGEDGTVQGLLEILDIPYTGSDTIASAVSIDKDFTKRIVKSLGINTPDWETFISEGDVL 122

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
           +      P V+KP++ GSS+G+ +++  + +    L        +++++E++V+G ++T 
Sbjct: 123 NTEWNKFPAVVKPVREGSSVGLKIVESLEELKEYALDLL--KKTERVMVEEFVEGRDMTV 180

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
           G++   +L V EI +PK   Y YE KY+   S + +       + K++Q ++    + + 
Sbjct: 181 GILKGEALPVVEI-IPKKGVYDYECKYTKGMSEYRILK--DEKLSKKLQEISLKISKFLS 237

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            +  +R DF       K+F+LE+N  PGMT +S+ P  A   G  F++L+  ++
Sbjct: 238 LKDFARIDFRVTK-EGKIFFLEVNTIPGMTELSLLPMAAKEKGMDFKKLISIII 290


>gi|170700185|ref|ZP_02891203.1| D-alanine--D-alanine ligase [Burkholderia ambifaria IOP40-10]
 gi|170134917|gb|EDT03227.1| D-alanine--D-alanine ligase [Burkholderia ambifaria IOP40-10]
          Length = 313

 Score =  322 bits (827), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 102/300 (34%), Positives = 158/300 (52%), Gaps = 11/300 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL+SG+     L DAG      D        L       AFN LHG
Sbjct: 12  VAVLFGGESAEREVSLTSGRLVLQGLRDAGIDAHPFDPAERPLSALKDEGFVRAFNALHG 71

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118
            +GE+G +Q  L+   I YT SG+L SAL +DK R+K V    GVP  P   V R     
Sbjct: 72  GYGENGQIQGALDFYGIRYTGSGVLGSALGLDKFRTKLVWQQTGVPTPPFETVMRGDDYA 131

Query: 119 ----DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD- 173
               D    +  P  +KP   GSS+ ++ +K   ++P  L +++   H   +++E+ ++ 
Sbjct: 132 ARATDIVAKLGLPLFVKPASEGSSVAVLKVKTADALPAALSEAA--THDKIVIVEKSIEG 189

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           G E T  + GD  L + +I VP  +FY Y  KY + ++ +++P  +P +   E++R+A  
Sbjct: 190 GGEYTACIAGDLDLPLIKI-VPAGEFYDYHAKYVADDTQYLIPCGLPAEQETELKRIARR 248

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           A   +GC    R+DF+ D      ++LE+N  PGMT  S+ P+ A   G  + EL++ ++
Sbjct: 249 AFDVLGCTDWGRADFMLDAAGNA-YFLEVNTAPGMTDHSLPPKAARSIGIGYSELVVKVL 307


>gi|310642033|ref|YP_003946791.1| d-alanine--d-alanine ligase [Paenibacillus polymyxa SC2]
 gi|309246983|gb|ADO56550.1| D-alanine--D-alanine ligase [Paenibacillus polymyxa SC2]
          Length = 305

 Score =  322 bits (827), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 94/305 (30%), Positives = 164/305 (53%), Gaps = 10/305 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR--SVGLVLAHLKPDLAFNVL 58
           + V+MGG S+EREVSL +G+   + L+ + ++V  I +D+   +   + H   D A   L
Sbjct: 3   IGVIMGGTSTEREVSLQTGQEMLNHLDRSRYEVVPIVIDQPADLIAQVQHTGIDFALLAL 62

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL---VNR 115
           HG +GEDG VQ  LE L IPYT SG+LAS+L M+K  SK ++ S GV     +    +  
Sbjct: 63  HGQYGEDGTVQGALETLGIPYTGSGVLASSLCMNKQLSKMLLKSAGVLTPAGLCWQGMGD 122

Query: 116 FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175
           +   +   +  P ++KP  GGSS+GI ++  ++ +   + ++ +      +L+E ++ G 
Sbjct: 123 YDQQAVEQLGYPVIVKPNMGGSSIGIQLVHNEKELHSAIQKACAL--DQTILVEPFIQGT 180

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
           ELTC ++    L +  I    S+++ Y+ KY +  +      ++P  I + V+  A  ++
Sbjct: 181 ELTCSIVDGEVLPIIRIRSAHSEWFDYKAKYETGGAEE-KVIQLPPVIEQRVRETALASY 239

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           + + C+  +R D +        + LE+N  PGMT  S+ P+ AA AG +F +LL  ++  
Sbjct: 240 RLLQCKVYARIDMIL--CQDVPYVLEVNTLPGMTANSLLPKSAAAAGITFTQLLDRIITS 297

Query: 296 ASCLR 300
           +   R
Sbjct: 298 SLHER 302


>gi|269838014|ref|YP_003320242.1| D-alanine/D-alanine ligase [Sphaerobacter thermophilus DSM 20745]
 gi|269787277|gb|ACZ39420.1| D-alanine/D-alanine ligase [Sphaerobacter thermophilus DSM 20745]
          Length = 375

 Score =  322 bits (827), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 99/355 (27%), Positives = 165/355 (46%), Gaps = 61/355 (17%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR--------SVGLVLAH---- 48
           + V+ GG S E +VSL S +A   A++   F+V  I + R             LA     
Sbjct: 10  VGVIFGGRSGEHDVSLRSAQAILRAIDRERFEVVPIGITREGRWLSGGDPLRQLAATSRL 69

Query: 49  ------------------------------------LKPDLAFNVLHGNFGEDGLVQAIL 72
                                                + D+ F VLHG +GEDG VQ +L
Sbjct: 70  ALAPGDDPPAEESDLGSALAVPETGHAVEVAGAGVVQQLDVVFPVLHGPYGEDGTVQGLL 129

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHL 123
           EL ++PY  +G+L SA+SMDK+ +KQ+    G+PV P + V R   +          +  
Sbjct: 130 ELADVPYVGAGVLGSAVSMDKVVAKQLFEREGLPVAPWLWVTRRQWERDPEGVAARVERE 189

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           +  P  +KP   GSS+G+  +     +P  + +++   +  +L++E+ +D  EL   V+G
Sbjct: 190 LGYPCFVKPANLGSSVGVSKVHHPGELPGAMEEAA--RYDRKLVVERGIDARELEVSVLG 247

Query: 184 DASL--DVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241
           +      V     P ++FY Y+ KY    S  ++PA I  +    V+ +A  A + +   
Sbjct: 248 NDEPITSVVGEIRPVNEFYDYQAKYVDEGSELLVPAPITQEQSDTVREMAVRAFKVVDAA 307

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           G++R DF  +  +  ++  EIN  PG T +S++P +   +G SFREL+  ++E A
Sbjct: 308 GMARVDFFLERNTGTIYINEINTIPGFTQISMYPILWEASGLSFRELVSRLIELA 362


>gi|149186199|ref|ZP_01864513.1| D-alanyl-D-alanine ligase [Erythrobacter sp. SD-21]
 gi|148830230|gb|EDL48667.1| D-alanyl-D-alanine ligase [Erythrobacter sp. SD-21]
          Length = 329

 Score =  322 bits (827), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 124/308 (40%), Positives = 186/308 (60%), Gaps = 11/308 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG ++ER VSL SG+  A ALE+ G KV++ID+DR V   +A +KPD+ FN LHG
Sbjct: 13  IAVLMGGWANERPVSLMSGEGVAKALEERGHKVTRIDMDRQVAARIAEVKPDVVFNALHG 72

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG VQ +L+L+ + YTHSG+  S +++DK  +KQ +   G+P+    +V    +  
Sbjct: 73  VPGEDGTVQGMLDLMGVAYTHSGLATSVIAIDKQLTKQALVPHGIPMPGGRIVKSADLFD 132

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSI--PLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           +  +  PYV+KP+  GSS+G+ ++  + +   P+       W    +LL E Y+ G E+T
Sbjct: 133 RDPLPRPYVLKPVNEGSSVGVAIVTDESNHGNPISRSAKGPWQDFAELLAEPYIKGREMT 192

Query: 179 CGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
             V+    G  +L VTE+  PKS FY ++ KY+   + HV PA IP  I      +A  A
Sbjct: 193 AAVVDFPEGPRALAVTELK-PKSGFYDFDAKYTDGLTDHVCPADIPEHIRDLCLEIALKA 251

Query: 235 HQAIGCRGISRSDFLFDPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           H+ +GC+G SR+DF +D    +  +F LE N QPGMTP+S+ PE A +AG  +  L+  +
Sbjct: 252 HKVLGCKGTSRTDFRWDEEEGEDGLFVLETNTQPGMTPLSLVPEQAKFAGIEYGALVETI 311

Query: 293 VEDASCLR 300
           +  A+ LR
Sbjct: 312 I--AAALR 317


>gi|224582216|ref|YP_002636014.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|224466743|gb|ACN44573.1| D-alanylalanine synthetase [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
          Length = 370

 Score =  322 bits (827), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 86/348 (24%), Positives = 165/348 (47%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50
           + ++ GG S+E EVSL S K    A++   F V  + +D++    +   +          
Sbjct: 12  VGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGIDKAGQWHVNDAENYLQNADDPA 71

Query: 51  ---------------------------------PDLAFNVLHGNFGEDGLVQAILELLEI 77
                                             D+ F ++HG  GEDG +Q +L +  +
Sbjct: 72  HIALRPSAISLAQVPGKHQHQLINAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 131

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR------FTMDSQHLISPPYVIK 131
           P+  S +L+SA  MDK  +K+++   G+ + P I + R         + +  +  P  +K
Sbjct: 132 PFVGSDVLSSAACMDKDVAKRLLRDAGLNIAPFITLTRTNRHAFSFAEVESRLGLPLFVK 191

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  +  +      +  +  ++H  ++++EQ + G E+ C V+G+ +   + 
Sbjct: 192 PANQGSSVGVSKVANEAQYQQAVALAFEFDH--KVVVEQGIKGREIECAVLGNDNPQAST 249

Query: 192 IA--VPKSDFYSYELKYSSLN-STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               V  S+FY+Y+ KY   N +  V+PA+IP ++  +++ +A  A+Q +GC G++R D 
Sbjct: 250 CGEIVLNSEFYAYDTKYIDDNGAQVVVPAQIPSEVNDKIRAIAIQAYQTLGCAGMARVDV 309

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                  +V   EIN  PG T +S++P++   +G  + +L+  ++E A
Sbjct: 310 FLTA-DNEVVINEINTLPGFTNISMYPKLWQASGLGYTDLISRLIELA 356


>gi|328952241|ref|YP_004369575.1| D-alanine--D-alanine ligase [Desulfobacca acetoxidans DSM 11109]
 gi|328452565|gb|AEB08394.1| D-alanine--D-alanine ligase [Desulfobacca acetoxidans DSM 11109]
          Length = 309

 Score =  322 bits (827), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 104/305 (34%), Positives = 174/305 (57%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP-DLAFNVLH 59
           +A+L GG SSEREVSL SG     AL+ A + + + D    +  ++      D+A  ++H
Sbjct: 6   LALLSGGKSSEREVSLKSGGQVFEALDKAKYDIYRYDPQTDLRQLINDAPNLDVALIIMH 65

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G +GEDG +Q +L+LL +PY  SG++ASAL+M+K  SK +    G+ V  ++  +R    
Sbjct: 66  GRWGEDGTIQGLLDLLGLPYQGSGVMASALAMNKELSKTLYRQAGLKVPRAVFFSRQDAI 125

Query: 120 S----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175
                +  +  P VIKP+  GSS+G+ V +    +   + ++ +++   ++L+E+++ G+
Sbjct: 126 DPRALEAAVGLPAVIKPVNEGSSIGVTVARHLDQLGAGIGEALAYDR--RVLVEEFISGM 183

Query: 176 ELTCGVMGDAS---LDVTEIAVPKSD-FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           E+T GV+G+ +   L + EI   KS  F++YE KY    +  ++PA++  ++   VQ   
Sbjct: 184 EVTAGVLGNDALLPLPLVEIVPDKSHPFFNYEAKYLPGATEEIVPARLSPEMTIRVQECG 243

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             AH+A+GC G SR+D +      +++ LE N  PGMT  S+FP+ A   G  F  LL  
Sbjct: 244 LTAHRALGCWGYSRTDTIVR--DGEIYVLETNTIPGMTATSLFPQAARAMGLDFPALLDR 301

Query: 292 MVEDA 296
           +VE A
Sbjct: 302 LVELA 306


>gi|171057215|ref|YP_001789564.1| D-alanine--D-alanine ligase [Leptothrix cholodnii SP-6]
 gi|170774660|gb|ACB32799.1| D-alanine--D-alanine ligase [Leptothrix cholodnii SP-6]
          Length = 329

 Score =  322 bits (826), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 98/296 (33%), Positives = 160/296 (54%), Gaps = 13/296 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG S+ERE+SL SG     AL   G      D        L H      F  LHG
Sbjct: 12  VAVLMGGSSAEREISLMSGAGVLQALLSQGVDAHAFDPAERELAELKHEGYARCFIALHG 71

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG VQ  LELL IPYT SG++ASA++MDK+ +K++  + G+P    + +      +
Sbjct: 72  RHGEDGTVQGALELLGIPYTGSGVMASAIAMDKVMTKRIWLAEGLPTPRYVWLASDDQGA 131

Query: 121 QHL------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
           + +      +  P ++KP + GSS+G+  + +   +   +  S+ ++    +L E +++G
Sbjct: 132 ERVGRVSAELGLPLIVKPPREGSSIGVTKVVEAAQVGAAVALSAGYDAD--VLCEAFIEG 189

Query: 175 IELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            ELTC V+G+     +L V  I  P +  Y Y+ KY +    ++ P+ +  ++ +E+QR+
Sbjct: 190 EELTCPVLGEGAHAVALPVIRIVPPAAG-YDYQNKYFTDEVQYLCPSGLSAELEREIQRI 248

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
              +++A+GCRG  R+D +     ++ F LE+N  PGMT  S+ P  A  +G S+ 
Sbjct: 249 TLASYRALGCRGWGRADLMLRAGDQQPFLLEMNTSPGMTGHSLVPMSARASGISYE 304


>gi|62178991|ref|YP_215408.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|161615441|ref|YP_001589406.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Paratyphi B str. SPB7]
 gi|62126624|gb|AAX64327.1| D-alanine-D-alanine ligase A [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|161364805|gb|ABX68573.1| hypothetical protein SPAB_03212 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|322713448|gb|EFZ05019.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
          Length = 364

 Score =  322 bits (826), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 86/348 (24%), Positives = 165/348 (47%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50
           + ++ GG S+E EVSL S K    A++   F V  + +D++    +   +          
Sbjct: 6   VGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGIDKAGQWHVNDAENYLQNADDPA 65

Query: 51  ---------------------------------PDLAFNVLHGNFGEDGLVQAILELLEI 77
                                             D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  HIALRPSAISLAQVPGKHQHQLINAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR------FTMDSQHLISPPYVIK 131
           P+  S +L+SA  MDK  +K+++   G+ + P I + R         + +  +  P  +K
Sbjct: 126 PFVGSDVLSSAACMDKDVAKRLLRDAGLNIAPFITLTRTNRHAFSFAEVESRLGLPLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  +  +      +  +  ++H  ++++EQ + G E+ C V+G+ +   + 
Sbjct: 186 PANQGSSVGVSKVANEAQYQQAVALAFEFDH--KVVVEQGIKGREIECAVLGNDNPQAST 243

Query: 192 IA--VPKSDFYSYELKYSSLN-STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               V  S+FY+Y+ KY   N +  V+PA+IP ++  +++ +A  A+Q +GC G++R D 
Sbjct: 244 CGEIVLNSEFYAYDTKYIDDNGAQVVVPAQIPSEVNDKIRAIAIQAYQTLGCAGMARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                  +V   EIN  PG T +S++P++   +G  + +L+  ++E A
Sbjct: 304 FLTA-DNEVVINEINTLPGFTNISMYPKLWQASGLGYTDLISRLIELA 350


>gi|332982128|ref|YP_004463569.1| D-alanine--D-alanine ligase [Mahella australiensis 50-1 BON]
 gi|332699806|gb|AEE96747.1| D-alanine--D-alanine ligase [Mahella australiensis 50-1 BON]
          Length = 360

 Score =  322 bits (826), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 97/346 (28%), Positives = 165/346 (47%), Gaps = 52/346 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           +AVL GG S E EVSL S  +    ++   ++   I + +    +L              
Sbjct: 6   IAVLFGGRSGEHEVSLMSAVSVLRNMDKDKYEPIMIGITKEGRWMLYEGALEDIEENRWQ 65

Query: 49  --------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
                                     +  D  F VLHG  GEDG VQ +LEL +IPY   
Sbjct: 66  ISARPVVLAPDPSYKGFIDIKRDCTFIPVDAVFPVLHGPHGEDGTVQGLLELADIPYVGC 125

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPS---------ILVNRFTMDSQHLISPPYVIKPL 133
           G+LAS+L+MDK+ SK+V    G+ V            +    F   ++  +  P  +KP 
Sbjct: 126 GVLASSLAMDKVLSKEVFLRHGLRVAEYTSTIYEHFKVTPKVFVSVAETKLGYPCFVKPA 185

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
             GSS+GI        +   +  +    +  ++L+E+++DG E+ C V+G+   + + + 
Sbjct: 186 NMGSSVGITKAHNRDELMEAIELAG--KYDRKILVEEFIDGHEIECAVLGNDYPEASTVG 243

Query: 194 --VPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
             VP ++FY Y  KY     S  V+PA +P+D+ +EV+R+A  A++A+ C G++R DFL 
Sbjct: 244 QIVPCNEFYDYNAKYFDEGKSGLVIPADLPIDVMEEVRRMAVEAYRALDCAGMARVDFLV 303

Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                 ++  E+N  PG T +S++P++   +   + +L+  ++E A
Sbjct: 304 KKSDNTIYLNEVNTIPGFTKISMYPKLWDASSLPYDKLIDRLIELA 349


>gi|198282522|ref|YP_002218843.1| D-alanine/D-alanine ligase [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|218665251|ref|YP_002424712.1| D-alanine--D-alanine ligase [Acidithiobacillus ferrooxidans ATCC
           23270]
 gi|198247043|gb|ACH82636.1| D-alanine/D-alanine ligase [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|218517464|gb|ACK78050.1| D-alanine--D-alanine ligase [Acidithiobacillus ferrooxidans ATCC
           23270]
          Length = 308

 Score =  322 bits (826), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 113/299 (37%), Positives = 162/299 (54%), Gaps = 7/299 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS-VGLVLAHLKPDLAFNVLH 59
           +AVL GG S EREVSL SG A    L+  G     +D+  + +   +A     +AFNV H
Sbjct: 7   IAVLYGGPSGEREVSLDSGHAVLQTLQGLGMDAVGVDIQPAILQQQMAESGAQIAFNVCH 66

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--FT 117
           G  GEDGL+QA LE L++PYT SG+LASAL+MDK R KQ+  + G+PV   IL++R   T
Sbjct: 67  GAVGEDGLLQACLETLDMPYTGSGVLASALAMDKWRCKQLWRAAGLPVTDGILLHRGSHT 126

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            D       P  IKP  GGSSLG+  +     +  D     ++   D++L E  V G E+
Sbjct: 127 PDLGARFGWPLYIKPNHGGSSLGVSKVGGPAEL--DAALQCAFAIEDEVLCEGAVIGHEV 184

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           T G++   +L    I  P++ FY Y  KY + ++ ++LP+ +   + +++Q LA  A   
Sbjct: 185 TVGILDGQALPPIVIETPRA-FYDYTAKYLADDTRYLLPSGLGAPLEQQLQALALRAFAE 243

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +GCR   R DF+      +   LE+N  PGMT  S+ P  A   G  F EL   ++  A
Sbjct: 244 LGCRDWGRVDFMI-GGDGRPHLLEVNSVPGMTSHSLIPMAAKATGMGFPELCATILRTA 301


>gi|172039648|ref|YP_001806149.1| D-alanyl-alanine synthetase A [Cyanothece sp. ATCC 51142]
 gi|171701102|gb|ACB54083.1| D-alanine--D-alanine ligase [Cyanothece sp. ATCC 51142]
          Length = 351

 Score =  322 bits (826), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 92/343 (26%), Positives = 162/343 (47%), Gaps = 49/343 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALE----DAGFKVSQIDVDRSVGLVLAH-------- 48
           + +L GG S E EVS++S  A A AL+       + +  I + ++   V           
Sbjct: 8   VGLLFGGRSGEHEVSINSAAAIAQALQTGDNANKYDILPIYIQKNGVWVAGDTANEVLDS 67

Query: 49  ---------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87
                                 + ++ F VLHG  GEDG +Q +L L+++P+  SG+L S
Sbjct: 68  KAPLATEETNPSQLWQFPTQVQEVEVWFPVLHGPNGEDGTLQGLLTLMQVPFVGSGVLGS 127

Query: 88  ALSMDKMRSKQVVSSCGVPVCPSILVNRFTM------------DSQHLISPPYVIKPLKG 135
           A+ MDK+  K   +  G+P      V R  +            + +  +  P  +KP   
Sbjct: 128 AVGMDKIAMKMAFAQAGLPQVKYRAVERSQVWSNPCIFPKLCDEIEADLGYPCFVKPANL 187

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195
           GSS+GI  ++    +   L  ++S++   +++IE  V+  EL C V+G+ +   + I   
Sbjct: 188 GSSVGIAKVRSHSELETALDSAASYDR--RIVIEAGVNARELECAVLGNDNPKASVIGEV 245

Query: 196 --KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
             + DFY YE KY+   S   +PA +P  I  ++Q +A  A + +   G++R DF +   
Sbjct: 246 TFEGDFYDYETKYTEGRSQIHIPANLPEKIVSQIQEMAIQAFKTVDAAGLARVDFFYVEE 305

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           + +++  EIN  PG T  S++P++    G +F +L+  +V+ A
Sbjct: 306 TEEIYINEINTLPGFTKFSMYPQLWKATGINFEQLVDQLVQFA 348


>gi|170767847|ref|ZP_02902300.1| D-alanine--D-alanine ligase [Escherichia albertii TW07627]
 gi|170123335|gb|EDS92266.1| D-alanine--D-alanine ligase [Escherichia albertii TW07627]
          Length = 364

 Score =  322 bits (826), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 90/348 (25%), Positives = 164/348 (47%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50
           + ++ GG S+E EVSL S K    A++ + F V  + +D+     ++             
Sbjct: 6   IGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDANNYLLNADDPA 65

Query: 51  ---------------------------------PDLAFNVLHGNFGEDGLVQAILELLEI 77
                                             D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  HIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLISPPYVIK 131
           P+  S +LASA  MDK  +K+++   G+ + P I + R         + Q  +  P  +K
Sbjct: 126 PFVGSDVLASAACMDKDITKRLLRDAGLNIAPFITLTRANRHKISFAEVQSKLGLPLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  +  ++   + +  +  ++H  ++++EQ + G E+ C V+G+     + 
Sbjct: 186 PANQGSSVGVSKVTSEEQYAIAVDLAFEFDH--KVIVEQGIKGREIECAVLGNDDPQAST 243

Query: 192 IA--VPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               V  SDFY+Y+ KY     +  V+PA I  +I  +++ +A  A+Q +GC G++R D 
Sbjct: 244 CGEIVLTSDFYAYDTKYIDEDGAKVVVPANIAPEINDKIRAIAVQAYQTLGCAGMARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              P    V   EIN  PG T +S++P++   +G S+ +L+  ++E A
Sbjct: 304 FLTP-ENDVVINEINTLPGFTNISMYPKLWQASGLSYTDLITRLIELA 350


>gi|189485639|ref|YP_001956580.1| D-alanine-D-alanine ligase [uncultured Termite group 1 bacterium
           phylotype Rs-D17]
 gi|170287598|dbj|BAG14119.1| D-alanine-D-alanine ligase [uncultured Termite group 1 bacterium
           phylotype Rs-D17]
          Length = 306

 Score =  322 bits (826), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 113/296 (38%), Positives = 169/296 (57%), Gaps = 5/296 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VL GG+SSERE+S+ SGKA  +  +     V  IDV+RS+   +   K D+A+  LHG
Sbjct: 15  IGVLYGGLSSEREISIKSGKAVLNVFKKLKLNVCGIDVNRSIAEEIKKEKIDVAYIALHG 74

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LE+L IPYT SGI ASA S+DK  SK++     +      ++ +F    
Sbjct: 75  PMGEDGTIQGMLEILGIPYTGSGIFASAASIDKDVSKKIFKYADILTPEWKMLKKFGT-V 133

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
             +   P V+KP+  GS++G+ ++K+       + +   + +GD+ LIEQ+++G E+T G
Sbjct: 134 PEIKKYPVVVKPVSQGSTIGVAIVKRPSEFAAAVKEV--FKYGDEALIEQFIEGKEVTVG 191

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V+   +L V EI VPK  FY ++ KY    S H++PA I  + Y+ VQ  A   ++   C
Sbjct: 192 VLNGKALPVVEI-VPKGKFYDFKAKYQKGGSQHIIPAGISEEAYETVQNYAEKVYEIFKC 250

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           R I R D + D   R V+  E N  PGMT  S+ P+ +   GYSF  L+L + E A
Sbjct: 251 RAICRVDMIVDRKDR-VWVFENNTIPGMTETSLVPDESRAVGYSFESLVLKITESA 305


>gi|50086472|ref|YP_047982.1| D-alanine--D-alanine ligase [Acinetobacter sp. ADP1]
 gi|81392119|sp|Q6F705|DDL_ACIAD RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|49532448|emb|CAG70160.1| D-alanine-D-alanine ligase B [Acinetobacter sp. ADP1]
          Length = 309

 Score =  322 bits (826), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 96/296 (32%), Positives = 157/296 (53%), Gaps = 8/296 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+ER+VSL SG+A   AL  +G +    D        L  +  D AF VLHG
Sbjct: 10  VAVLFGGKSAERDVSLDSGQAVLDALLRSGVQAEAFDPKERSVTEL--VGYDRAFIVLHG 67

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118
             GEDG +Q +LE L+IPYT +G+  SA+ MDK+++KQ+     +P  P  +V++ +   
Sbjct: 68  RGGEDGQIQGVLEWLDIPYTGTGVQGSAIGMDKIKTKQIWQGSDLPTAPYRIVSKDSDLN 127

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           +    +  P +IKP+  GSS+G+  ++K +     + ++++  H   ++ E+++ G E T
Sbjct: 128 EIVASLGLPVIIKPVHEGSSIGMSKVEKIEDFAPAIEKATA--HDAIVMAEKWITGREYT 185

Query: 179 CGVMGDASLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
             V+   +L V  +  P+   FY Y+ KY   +  + +P+ +     K++Q L   A   
Sbjct: 186 IVVLNGKALPVIRLQPPQDVAFYDYDAKYQRNDVQYGIPSGLSDSDEKKLQELTLRAFHT 245

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +G  G  R D + D      + LEIN  PGMT  S+ P+ A   G  F  L + ++
Sbjct: 246 VGASGWGRVDAMQDEHGN-FWLLEINTVPGMTSHSLVPKAAQAIGIDFDALCVEIL 300


>gi|53803430|ref|YP_114840.1| D-alanine--D-alanine ligase [Methylococcus capsulatus str. Bath]
 gi|81681291|sp|Q604W0|DDL_METCA RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|53757191|gb|AAU91482.1| D-alanine--D-alanine ligase [Methylococcus capsulatus str. Bath]
          Length = 309

 Score =  322 bits (826), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 103/298 (34%), Positives = 161/298 (54%), Gaps = 6/298 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG ++ERE+SL SGKA   AL   G     IDV R +   L   + D  FNV+HG
Sbjct: 14  VAVLMGGSAAEREISLKSGKAVLEALRSGGIDAEGIDVGRDLIAPLLERRFDRVFNVIHG 73

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--M 118
             GEDG++Q  L  L +P T SG+LASALSMDK+R+K   +  G+P  P + ++      
Sbjct: 74  RGGEDGVLQGALACLRVPCTGSGVLASALSMDKLRTKLCWTGAGLPTPPWLRLDSPDDLE 133

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
             +  +  P ++KP + GSS+G+      + +     ++S   +G  +  E+++DG+E T
Sbjct: 134 RCRQALGFPVIVKPAEEGSSIGMSRAATAEELAQAWERAS--GYGCAVFAERWIDGVEYT 191

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
            G++    L +  +  P + FY ++ KY +  + +  P  +      E+Q L   A Q +
Sbjct: 192 GGMLKGVPLPLIRLETPHA-FYDFDAKYRADTTRYHCPCGLDTGREAELQALVLRACQIV 250

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           G  G  R D L D  S + + +E+N  PGMT  S+ P  A  AG  F+EL+  ++E +
Sbjct: 251 GVSGWGRVDLLVD-RSGQPWLIEVNTVPGMTDHSLVPMAAKAAGIDFQELVWHILETS 307


>gi|157369610|ref|YP_001477599.1| D-alanine--D-alanine ligase [Serratia proteamaculans 568]
 gi|157321374|gb|ABV40471.1| D-alanine--D-alanine ligase [Serratia proteamaculans 568]
          Length = 367

 Score =  322 bits (826), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 92/348 (26%), Positives = 166/348 (47%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP- 51
           + V+ GG S+E EVSL S K    A++   F V+ + +D+            +L    P 
Sbjct: 6   VGVIFGGKSAEHEVSLQSAKNIVDAIDKEKFDVTLLGIDKQGQWHINDASNYLLNAENPA 65

Query: 52  ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
                                             D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  LIALNRSNKNVALIPGQEKQQLIESGSQGALGQLDVIFPIVHGTLGEDGSLQGLLRMANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFTMDSQHL---ISPPYVIK 131
           P+  +G+L SA+SMDK  +K+++   G+ + P + +   NR   D + L   +  P  +K
Sbjct: 126 PFVGAGVLGSAVSMDKDVTKRLLRDAGLAIAPFVTLTRSNRAKFDFEQLSERLGLPLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  ++        +  + S++H  ++L+E  + G E+ C V+G+     + 
Sbjct: 186 PANQGSSVGVSKVQDRAGFEAAVALAFSFDH--KVLVESAIVGREIECAVLGNDEPQASL 243

Query: 192 IA--VPKSDFYSYELKYSSL-NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               V    FYSY+ KY +   +  ++PA I  ++  +++ +A  A +A+ C G++R D 
Sbjct: 244 CGEIVLSDAFYSYDTKYINEQGAQVIVPAAIEPEVSDKIRDVALKAFRALECFGLARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              P    V   EIN  PG T +S++P++ A +G S+ +L+  ++E A
Sbjct: 304 FLTP-DNNVVINEINTLPGFTNISMYPKLWAASGVSYSQLITRLIELA 350


>gi|157964319|ref|YP_001499143.1| D-alanine--D-alanine ligase [Rickettsia massiliae MTU5]
 gi|167012331|sp|A8F110|DDL_RICM5 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|157844095|gb|ABV84596.1| D-alanine--D-alanine ligase [Rickettsia massiliae MTU5]
          Length = 321

 Score =  322 bits (825), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 114/297 (38%), Positives = 189/297 (63%), Gaps = 3/297 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +A++ GG+S+EREVSL S +  + AL + G+ V+ ID+   + + L  +KPD+ FN LHG
Sbjct: 25  IALMAGGMSAEREVSLVSSEGVSKALIELGYSVTFIDMGADITVRLQEIKPDIVFNCLHG 84

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG +  +L ++ IPYTHSG+L+SAL+ +K+ S+    +  + +  SI+VN+     
Sbjct: 85  TYGEDGCLPGLLNIMRIPYTHSGMLSSALAFNKIHSRSWFLTNNINMAESIVVNKSDNIK 144

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  PYVIKPL  GSS+G+ VI  + +          + +GDQ++IEQY+ G EL   
Sbjct: 145 NDPMKRPYVIKPLTQGSSIGVEVIFAEDNFNFA---DYDFPYGDQVIIEQYIKGRELQVA 201

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V+   +L V EI + K+ FY YE KY+   + H+ PA +P ++Y+++   +   ++ + C
Sbjct: 202 VLNGKALGVLEIKLLKNRFYDYETKYTEGFADHLCPAPLPANLYEKLLIESEKIYKTMNC 261

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           +G +R++F+ +  + K++ LE+N  PGMTP+SI PE+AAYAG +F  L+  +++ AS
Sbjct: 262 KGPARAEFILEEQTNKLYALELNTHPGMTPLSIVPEIAAYAGINFTNLIEEIIKTAS 318


>gi|317049667|ref|YP_004117315.1| D-alanine/D-alanine ligase [Pantoea sp. At-9b]
 gi|316951284|gb|ADU70759.1| D-alanine/D-alanine ligase [Pantoea sp. At-9b]
          Length = 364

 Score =  322 bits (825), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 94/348 (27%), Positives = 163/348 (46%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           + ++ GG S+E EVSL S K    A++ + F V  + +D+     L              
Sbjct: 6   VGIIFGGKSAEHEVSLQSAKNILEAIDTSKFDVVLLGIDKQGEWHLNDASGFLLNAENPS 65

Query: 50  --------------------------------KPDLAFNVLHGNFGEDGLVQAILELLEI 77
                                           + D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  LIALNRSGENVALVPGQASQQLITRQNAHPLSQVDVIFPIVHGTLGEDGSLQGLLRMANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN---RFTMDSQHL---ISPPYVIK 131
           P+  SG+L SA+SMDK  +K+++   G+ V P I V    R  +D+Q +   +  P  IK
Sbjct: 126 PFVGSGVLGSAVSMDKDFTKRLLRDAGLKVAPWISVTQAQRARLDAQAVVAQLGLPLFIK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  +   +     L  + +++   ++LIEQ + G E+ C V+G+     + 
Sbjct: 186 PANQGSSVGVSKVSCIEEFAAALDLAFTFDR--KVLIEQGIKGREIECAVLGNDEPVASP 243

Query: 192 I--AVPKSDFYSYELKYSSLN-STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               V    FYSY+ KY + + +  V+PA I     + ++ +A  A QA+ C G++R D 
Sbjct: 244 CGEVVVHDAFYSYDTKYINESGAQVVVPAAISTADSEAIRAVALQAFQALECSGMARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                  ++   E+N  PG T +S++P++   AG S+  L+  ++E A
Sbjct: 304 FLTE-DGEIIVNEVNTLPGFTNISMYPKLWQAAGLSYSALITRLIELA 350


>gi|255066168|ref|ZP_05318023.1| D-alanine--D-alanine ligase B [Neisseria sicca ATCC 29256]
 gi|255049713|gb|EET45177.1| D-alanine--D-alanine ligase B [Neisseria sicca ATCC 29256]
          Length = 304

 Score =  322 bits (825), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 104/299 (34%), Positives = 159/299 (53%), Gaps = 7/299 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSERE+SL SG A  +AL+  G      D   +    L       AFN+LHG
Sbjct: 7   VAVLMGGFSSEREISLDSGAAILNALKSKGIDAHAFDPKETPLAELKTQGFQTAFNILHG 66

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--M 118
            +GEDG VQ  LELL IPYT SG+ ASA+ MDK R K +  + G+PV    +++  +   
Sbjct: 67  TYGEDGAVQGALELLGIPYTGSGVAASAIGMDKYRCKLIWQALGLPVPEFAVLHEDSDFD 126

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
             +  +  P  +KP   GSS+G++ +K+   +    +     +   +++ E+++ G E +
Sbjct: 127 AVEQQLGLPMFVKPAAEGSSVGVVKVKEKGRLKS--VYEELKHLQGEIIAERFIGGGEYS 184

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQA 237
           C V+    L    I +P ++FY YE KY+  ++ +  P   +       ++ LA    QA
Sbjct: 185 CPVLNGKGLPSIHI-IPATEFYDYEAKYNRDDTVYQCPSEDLSEAEENLMRSLAVRGAQA 243

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           IG  G  R DF       K++ LEIN  PGMT  S+ P+ AA+ G  F +L + +++ A
Sbjct: 244 IGAEGCVRVDF-LKDTDGKLYLLEINTLPGMTSHSLVPKSAAHTGVDFADLCIEILKTA 301


>gi|332142422|ref|YP_004428160.1| D-alanine--D-alanine ligase [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|327552444|gb|AEA99162.1| D-alanine--D-alanine ligase [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 322

 Score =  322 bits (825), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 101/302 (33%), Positives = 160/302 (52%), Gaps = 10/302 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SG A  +AL   G      D        L  L  D A  +LHG
Sbjct: 17  VAVLLGGDSAEREVSLNSGNAVLNALLRQGVNAFAFDPAERPLNDLLSLDVDRALIMLHG 76

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q  L+ L+IPYT S +L SAL+MDK+ +KQV  S G+P     + ++   ++
Sbjct: 77  RGGEDGAMQGALQFLKIPYTGSRVLGSALAMDKIHTKQVWQSLGLPTAKYEIADKRHFEA 136

Query: 121 ------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
                    +    ++KP + GSS+G+  +   + +   +    ++ + +Q+L+EQY+DG
Sbjct: 137 GKCSAIMDKLGNEVMVKPAREGSSIGMARVTSAKQLETAIQD--AFKYDNQVLLEQYIDG 194

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
            E T  V+   +L    ++ P + FY Y  KY    + +  P+ +  +   ++ +LA  A
Sbjct: 195 PEFTVSVIQGQALPSIRMSTPHT-FYDYAAKYQDNTTEYYCPSGLSEEQEAQLAKLASRA 253

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             AI   G  R D + D   R+ + LE N  PGMT  S+ P+ A  AG +F EL+L ++ 
Sbjct: 254 FDAISGSGWGRIDVMQDNQ-RQFYLLEANTVPGMTEKSLVPKAAKVAGLTFDELVLSILS 312

Query: 295 DA 296
            +
Sbjct: 313 TS 314


>gi|288819097|ref|YP_003433445.1| D-alanine:D-alanine ligase [Hydrogenobacter thermophilus TK-6]
 gi|288788497|dbj|BAI70244.1| D-alanine:D-alanine ligase [Hydrogenobacter thermophilus TK-6]
 gi|308752680|gb|ADO46163.1| D-alanine/D-alanine ligase [Hydrogenobacter thermophilus TK-6]
          Length = 288

 Score =  322 bits (825), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 105/293 (35%), Positives = 166/293 (56%), Gaps = 8/293 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VLMGG S ERE+SL +G+A   A+ + G +   +D++ ++   L  +KPD  F  LHG
Sbjct: 3   VVVLMGGRSEEREISLKTGEAVLRAIRELGHEAIPLDLEENLCQKLLEIKPDKVFIALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG VQ +L++L IPYT SG+L S L+MDK  +K++++   +PV   I V R     
Sbjct: 63  TYGEDGRVQGLLDILGIPYTGSGVLGSCLAMDKDITKKILTFHRIPVPAGICVRRGETFE 122

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            H  S P V+KP   GSS+G+ ++K    +   + +  S +H  ++LIE+Y+ G ++T G
Sbjct: 123 WH--SFPAVVKPADQGSSVGLFLVKDHDELENAVREVLSISH--KVLIEEYIIGRDITVG 178

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           ++   +L   EI  PK   Y YE KY+   S +V        + K++Q +A + H+ +  
Sbjct: 179 ILKGEALPPVEIK-PKKGIYDYESKYTKGMSDYVFLE--DEKLIKKLQDIALMVHKYLEL 235

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           + ISR DF         + LE N  PGMT +S+FP M    G  F+E++  ++
Sbjct: 236 KDISRVDFRLSE-DGVAYVLEANTIPGMTELSLFPMMCKKKGIEFKEMIHMLL 287


>gi|15892256|ref|NP_359970.1| D-alanine--D-alanine ligase [Rickettsia conorii str. Malish 7]
 gi|22095562|sp|Q92IT7|DDL_RICCN RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|15619394|gb|AAL02871.1| D-alanine--D-alanine ligase [Rickettsia conorii str. Malish 7]
          Length = 321

 Score =  321 bits (824), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 113/297 (38%), Positives = 186/297 (62%), Gaps = 3/297 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +A++ GG+S+EREVSL S +  + AL + G++V+ ID+   + + L  +KPD+ FN LHG
Sbjct: 25  IALMAGGMSAEREVSLVSSEGVSKALIELGYRVTFIDMGADIAVRLQEIKPDIVFNCLHG 84

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG +  +L ++ IPYTHSG+L+SAL+ DK+ S+    +  + +   I+VN+     
Sbjct: 85  TYGEDGCLPGLLNIMRIPYTHSGVLSSALAFDKIHSRIWFLTNNINMAEGIVVNKSDNIK 144

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  PYVIKPL  GSS+G+ VI  +            + +GDQ++IEQY+ G EL   
Sbjct: 145 NDPMKRPYVIKPLTQGSSIGVEVIFAEDDFNFA---DYDFPYGDQVIIEQYIKGRELQVA 201

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V+   +L   EI + K+ FY YE KY+   + H+ PA +P ++Y+++   +   ++ + C
Sbjct: 202 VLNGKALGALEIKLLKNRFYDYETKYTEGFADHLCPAPLPANLYEKLLIESEKIYKTMNC 261

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           +G +R++F+ +  + K++ LEIN  PGM P+SI PE+AAYAG +F  L+  +++ AS
Sbjct: 262 KGPARAEFILEEQTNKLYALEINTHPGMMPLSIVPEIAAYAGINFTNLIEEIIKTAS 318


>gi|253681038|ref|ZP_04861841.1| D-alanine--D-alanine ligase [Clostridium botulinum D str. 1873]
 gi|253562887|gb|EES92333.1| D-alanine--D-alanine ligase [Clostridium botulinum D str. 1873]
          Length = 343

 Score =  321 bits (824), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 88/335 (26%), Positives = 163/335 (48%), Gaps = 41/335 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44
           + +L GG S+E EVS  S  +    ++ + + V  I + +                    
Sbjct: 5   VGILFGGQSTEHEVSRVSASSVLKNIDLSKYDVYPIGITKDGKWFEYTGSVDKIESGEWE 64

Query: 45  ------------VLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
                       +L + + D+ F V+HG +GEDG +Q + +LL IP    G+++SA+ MD
Sbjct: 65  KDEFYKNPNGQEILFNREVDVVFPVMHGLYGEDGTIQGLCKLLNIPCVGPGVMSSAVCMD 124

Query: 93  KMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSLGIIV 143
           K+ +K V+ + G+     ++V      +         ++ +     IKP   GSS+GI  
Sbjct: 125 KVYTKYVLENFGIKQADYVVVTAHDYKTIKEDILTKIENKLGYDVFIKPSNSGSSVGISK 184

Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV--TEIAVPKSDFYS 201
               + +   L ++  ++   ++L+E  ++  E+   V+G+           VP ++FY 
Sbjct: 185 AHNREELEKGLSEALKFDR--KILVETALNAREIEVAVLGNDEPKAATPGEIVPANEFYD 242

Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
           YE KYS+  S  +LPA +  +  ++V+ LA   ++ + C G+SR DFL D  + +V+  E
Sbjct: 243 YEAKYSNAESKLLLPANLTKEKLEKVKALAVRIYKMLDCAGMSRVDFLVDKETEEVYLNE 302

Query: 262 INVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           IN  PG T +S++P+M    G ++ +L+  ++E A
Sbjct: 303 INTIPGFTKISMYPKMWQAEGKAYGDLISEIIELA 337


>gi|254967031|gb|ACT97551.1| putative D-alanine-D-alanine ligase [uncultured organism]
 gi|254967042|gb|ACT97557.1| putative D-alanine-D-alanine ligase [uncultured organism]
 gi|254967050|gb|ACT97561.1| putative D-alanine-D-alanine ligase [uncultured organism]
          Length = 301

 Score =  321 bits (824), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 121/301 (40%), Positives = 181/301 (60%), Gaps = 10/301 (3%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR--SVGLVLAHLKPDLAFNVLHG 60
           VLMGG S+EREVSL++GK   +AL+ AG++V   D+     +   L   KPD+ FN LHG
Sbjct: 7   VLMGGFSAEREVSLTTGKCVCAALKKAGYEVVSHDLQNGFELVETLKKEKPDVVFNALHG 66

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN-RFTMD 119
           N+GEDG +Q  L++L++PYTHSG+ AS L MDK  +K++ S  G+ V     +  R    
Sbjct: 67  NWGEDGEIQGFLDVLQVPYTHSGLKASVLGMDKSLTKELASENGIKVPQGEKMTFRKFKA 126

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
               +  PYV+KP+  GSS+G+ +I+K +       ++  +    ++LIE+++DG ELTC
Sbjct: 127 EGTFLKMPYVVKPVSDGSSVGVYIIRKKED-----AEAVRYEDDREILIEEFIDGKELTC 181

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
            V+G  +  VTE+     +FY Y  KY++  + H+LPA+IP +     +  A   H  +G
Sbjct: 182 MVLGSQAHVVTELRASD-EFYDYHAKYTAGATQHILPAEIPEEAANRCKLYAEHMHNILG 240

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
           CR +SR DF ++P    V  LEIN  PGMT +S+ PE A Y G  +  L  ++VE+ASC 
Sbjct: 241 CRSVSRCDFRYNPEDG-VVLLEINTAPGMTDLSLVPEQAKYIGIGYERLCSYLVENASCR 299

Query: 300 R 300
           +
Sbjct: 300 K 300


>gi|319654687|ref|ZP_08008766.1| D-alanylalanine synthetase [Bacillus sp. 2_A_57_CT2]
 gi|317393603|gb|EFV74362.1| D-alanylalanine synthetase [Bacillus sp. 2_A_57_CT2]
          Length = 358

 Score =  321 bits (824), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 92/343 (26%), Positives = 156/343 (45%), Gaps = 50/343 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           + +L GG S+E +VS+ +  A   AL+   F++  I +      V               
Sbjct: 5   VGLLYGGKSAEHKVSMQTAMAVIKALDLEKFEIHPIYISEEGQWVKGPQLQGPVSSVKEL 64

Query: 47  ----------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84
                                      D+ F +LHG  GEDG VQ +LELL +PY  +G+
Sbjct: 65  EFSQGEALPPTALAPTLFQGAQDKGPFDVIFPLLHGPNGEDGTVQGLLELLNLPYVGNGV 124

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ---------HLISPPYVIKPLKG 135
           LAS+  MDK+  K + +  G+P    +   R   +++           +  P  +KP   
Sbjct: 125 LASSAGMDKVIMKNIFAQAGLPQVKYVWFIRSEWENETEAAYDQVERELGYPCFVKPANL 184

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA--SLDVTEIA 193
           GSS+GI        +     ++  ++   +++IE+ V   E+  GV+G+      V    
Sbjct: 185 GSSVGISKCMNRSELEEAFKEAFQFDR--KIIIEEGVTAREIEAGVLGNDYPECSVAGEI 242

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
           VPK +FY Y+ KY   ++  ++PA+I    Y E++ +A  A +A+ C G+ R+DF     
Sbjct: 243 VPKVEFYDYKAKYEDGDTALIIPAEISEIEYSELRDMAIKAFKALDCSGLVRADFFLT-R 301

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             K++  E+N  PG TP S+FP +  + G  + +L+  +V  A
Sbjct: 302 EGKLYINEVNTMPGFTPFSMFPLLWKHTGVEYPQLIERLVNLA 344


>gi|261364822|ref|ZP_05977705.1| D-alanine--D-alanine ligase B [Neisseria mucosa ATCC 25996]
 gi|288566859|gb|EFC88419.1| D-alanine--D-alanine ligase B [Neisseria mucosa ATCC 25996]
          Length = 304

 Score =  321 bits (824), Expect = 7e-86,   Method: Composition-based stats.
 Identities = 104/299 (34%), Positives = 159/299 (53%), Gaps = 7/299 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSERE+SL SG A  +AL+  G      D   +    L       AFN+LHG
Sbjct: 7   VAVLMGGFSSEREISLDSGAAILNALKSKGIDAHAFDPKETPLAELKTQGFQTAFNILHG 66

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--M 118
            +GEDG VQ  LELL IPYT SG+ ASA+ MDK R K +  + G+PV    +++  +   
Sbjct: 67  TYGEDGAVQGALELLGIPYTGSGVAASAIGMDKYRCKLIWQALGLPVPEFAVLHEDSDFD 126

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
             +  +  P  +KP   GSS+G++ +K+   +    +     +   +++ E+++ G E +
Sbjct: 127 AVEQQLGLPMFVKPAAEGSSVGVVKVKEKGRLKS--VYEELKHLQGEIIAERFIGGGEYS 184

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQA 237
           C V+    L    I +P ++FY YE KY+  ++ +  P   +       ++ LA    QA
Sbjct: 185 CPVLNGKGLPSIHI-IPATEFYDYEAKYNRDDTVYQCPSEDLSEAEENLMRALAVRGAQA 243

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           IG  G  R DF       K++ LEIN  PGMT  S+ P+ AA+ G  F +L + +++ A
Sbjct: 244 IGADGCVRVDF-LKDTDGKLYLLEINTLPGMTSHSLVPKSAAHTGVDFADLCIEILKTA 301


>gi|303238402|ref|ZP_07324937.1| D-alanine/D-alanine ligase [Acetivibrio cellulolyticus CD2]
 gi|302594106|gb|EFL63819.1| D-alanine/D-alanine ligase [Acetivibrio cellulolyticus CD2]
          Length = 377

 Score =  321 bits (824), Expect = 7e-86,   Method: Composition-based stats.
 Identities = 92/360 (25%), Positives = 160/360 (44%), Gaps = 66/360 (18%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------------------- 40
           + V+ GG S+E EVS  S  +  + ++ + F VS + + +                    
Sbjct: 7   VMVIFGGQSTEHEVSRFSATSIINNMDRSKFDVSFVGITKEGRWVPYNGPVEKIASGEWE 66

Query: 41  ---------------------------------SVGLVLAHLKPDLAFNVLHGNFGEDGL 67
                                            +    +     D+ F VLHG  GEDG 
Sbjct: 67  EIAINEMVKGIPYRDNIINAIVSRGASSEAVIKNENKEINGGPIDVVFPVLHGCNGEDGT 126

Query: 68  VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------- 120
           +Q + E+  IPY  SG+L SAL MDK+ +K V    GVP    +   R  +         
Sbjct: 127 IQGLFEMAGIPYVGSGVLGSALGMDKIYAKIVFEKVGVPQAGYLFFTRKEIKENSDRVAD 186

Query: 121 --QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
             +     P  IKP   GSS+G+      + +   L  + +  +  ++LIE++++G E+ 
Sbjct: 187 AIEQRFEYPVFIKPSNAGSSVGVSKAHDRRELVEAL--NFAAKYDRKVLIEEFINGREVE 244

Query: 179 CGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           C V+G+ +   + +   +P ++FY Y  KY   +S  V+PA +P D   +++  A  A +
Sbjct: 245 CAVLGNDNPIASTVGEVIPCNEFYDYNAKYIDGSSKTVIPANLPADTILKIREYAVKAFK 304

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           A+ C G+SR DF     + +++  EIN  PG T +S++P +   +G  + EL+  +++ A
Sbjct: 305 ALDCAGLSRVDFFVHKETGEIYINEINTLPGFTNISMYPMLWEASGIPYSELIERLIDLA 364


>gi|229586498|ref|YP_002844999.1| D-alanine--D-alanine ligase [Rickettsia africae ESF-5]
 gi|259645172|sp|C3PMU6|DDL_RICAE RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|228021548|gb|ACP53256.1| D-alanine--D-alanine ligase [Rickettsia africae ESF-5]
          Length = 321

 Score =  321 bits (824), Expect = 7e-86,   Method: Composition-based stats.
 Identities = 115/297 (38%), Positives = 189/297 (63%), Gaps = 3/297 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +A+++GG+S+EREVSL S +  + AL + G++V+ ID+   + + L  +KPD+ FN LHG
Sbjct: 25  IALMVGGMSAEREVSLVSSEGVSKALIELGYRVTFIDMGADIAVRLQEIKPDIVFNCLHG 84

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG +  +L ++ IPYTHSG+L+SAL+ DK+ S+    +  + +  SI+VN+     
Sbjct: 85  TYGEDGCLPGLLNIMRIPYTHSGMLSSALAFDKIHSRIWFLTNNINMAESIVVNKSDNIK 144

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  PYVIKPL  GSS+G+ VI  +            + +GDQ++IEQY+ G EL   
Sbjct: 145 NDPMKRPYVIKPLTQGSSIGVEVIFAEDDFNFA---DYDFPYGDQVIIEQYIKGRELQVA 201

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V+   +L   EI + K+ FY YE KY+   + H+ PA +P ++Y+++   +   ++ + C
Sbjct: 202 VLNGKALGALEIKLLKNRFYDYETKYTEGFADHLCPAPLPANLYEKLLIESEKIYKTMNC 261

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           +G +R++F+ +  + K++ LEIN  PGMTP+SI PE+AAYAG +F  L+  +++ AS
Sbjct: 262 KGPARAEFILEEQTNKLYALEINTHPGMTPLSIVPEIAAYAGINFTNLIEEIIKMAS 318


>gi|326622081|gb|EGE28426.1| D-alanylalanine synthetase [Salmonella enterica subsp. enterica
           serovar Dublin str. 3246]
          Length = 370

 Score =  321 bits (824), Expect = 8e-86,   Method: Composition-based stats.
 Identities = 85/348 (24%), Positives = 164/348 (47%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50
           + ++ GG S+E EVSL S K    A++   F V  + +D++    +   +          
Sbjct: 12  VGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGIDKAGQWHVNDAENYLQNADDPA 71

Query: 51  ---------------------------------PDLAFNVLHGNFGEDGLVQAILELLEI 77
                                             D+ F ++HG  GEDG +Q +L +  +
Sbjct: 72  HIALRPSAISLAQVPGKHQHQLINAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 131

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR------FTMDSQHLISPPYVIK 131
           P+  S +L+SA  MDK  +K+++   G+ + P I + R         + +  +  P  +K
Sbjct: 132 PFVGSDVLSSAACMDKDVAKRLLRDAGLNIAPFITLTRTNRHAFSFAEVESRLGLPLFVK 191

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  +  +      +  +  ++H  ++++EQ + G E+ C V+G+ +   + 
Sbjct: 192 PANQGSSVGVSKVANEAQYQQAVALAFEFDH--KVVVEQGIKGREIECAVLGNDNPQAST 249

Query: 192 IA--VPKSDFYSYELKYSSLN-STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               V  S+FY+Y+ KY   N +  V+PA++P  +  +++ +A  A+Q +GC G++R D 
Sbjct: 250 CGEIVLNSEFYAYDTKYIDDNGAQVVVPAQLPSGVNDKIRAIAIQAYQTLGCAGMARVDV 309

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                  +V   EIN  PG T +S++P++   +G  + +L+  ++E A
Sbjct: 310 FLTA-DNEVVINEINTLPGFTNISMYPKLWQASGLGYTDLISRLIELA 356


>gi|251790921|ref|YP_003005642.1| D-alanine/D-alanine ligase [Dickeya zeae Ech1591]
 gi|247539542|gb|ACT08163.1| D-alanine/D-alanine ligase [Dickeya zeae Ech1591]
          Length = 366

 Score =  321 bits (824), Expect = 8e-86,   Method: Composition-based stats.
 Identities = 92/348 (26%), Positives = 160/348 (45%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP- 51
           + V+ GG SSE EVSL S K    A++   F V  + +D+            +L    P 
Sbjct: 6   VGVVFGGKSSEHEVSLQSAKNIVDAIDKTRFDVVLLGIDKQGEWHVNDASNYLLNADNPA 65

Query: 52  ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
                                             D+ F ++HG  GEDG +Q +L +  I
Sbjct: 66  LIALNRSSQNVALIPGQTHHQLIDTASASALSQIDVIFPIVHGTLGEDGSLQGLLRMANI 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM------DSQHLISPPYVIK 131
           P+  S +L SA+SMDK  +K+++   G+ V P + + R         D    +  P  +K
Sbjct: 126 PFVGSSVLGSAVSMDKDVTKRLLRDAGLQVAPFVTLTRANRARHAYGDLTAQLGLPLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  ++       D     ++ +  ++L+E  + G E+ C V+G+     + 
Sbjct: 186 PANQGSSVGVSKVRNQAEF--DHAVELAFRYDHKVLVESAIVGREIECAVLGNDYPKASV 243

Query: 192 IA--VPKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               V   +FYSY+ KY + +   V +PA +  D+++ ++ +A  A QA+ CRG++R D 
Sbjct: 244 CGEIVLHDEFYSYDTKYINEDGAAVAIPAVMNDDVHQHIRDIALRAFQALDCRGMARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              P   +V   E+N  PG T +S++P++   +G  +  L+  ++E A
Sbjct: 304 FLTP-DNQVVVNEVNTLPGFTNISMYPKLWEASGIGYTALITQLIELA 350


>gi|326626726|gb|EGE33069.1| D-alanylalanine synthetase [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 9]
          Length = 370

 Score =  321 bits (823), Expect = 8e-86,   Method: Composition-based stats.
 Identities = 85/348 (24%), Positives = 164/348 (47%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50
           + ++ GG S+E EVSL S K    A++   F V  + +D++    +   +          
Sbjct: 12  VGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGIDKAGQWHVNDAENYLQNADDPA 71

Query: 51  ---------------------------------PDLAFNVLHGNFGEDGLVQAILELLEI 77
                                             D+ F ++HG  GEDG +Q +L +  +
Sbjct: 72  HIALRPSAISLAQVPGKHQHQLINAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 131

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR------FTMDSQHLISPPYVIK 131
           P+  S +L+SA  MDK  +K+++   G+ + P I + R         + +  +  P  +K
Sbjct: 132 PFVGSDVLSSAACMDKDIAKRLLRDAGLNIAPFITLTRTNRHAFSFAEVESRLGLPLFVK 191

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  +  +      +  +  ++H  ++++EQ + G E+ C V+G+ +   + 
Sbjct: 192 PANQGSSVGVSKVANEAQYQQAVALAFEFDH--KVVVEQGIKGREIECAVLGNDNPQAST 249

Query: 192 IA--VPKSDFYSYELKYSSLN-STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               V  S+FY+Y+ KY   N +  V+PA++P  +  +++ +A  A+Q +GC G++R D 
Sbjct: 250 CGEIVLNSEFYAYDTKYIDDNGAQVVVPAQLPSGVNDKIRAIAIQAYQTLGCAGMARVDV 309

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                  +V   EIN  PG T +S++P++   +G  + +L+  ++E A
Sbjct: 310 FLTA-DNEVVINEINTLPGFTNISMYPKLWQASGLGYTDLISRLIELA 356


>gi|78188875|ref|YP_379213.1| D-alanyl-alanine synthetase A [Chlorobium chlorochromatii CaD3]
 gi|123579964|sp|Q3AS55|DDL_CHLCH RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|78171074|gb|ABB28170.1| D-alanine--D-alanine ligase [Chlorobium chlorochromatii CaD3]
          Length = 360

 Score =  321 bits (823), Expect = 8e-86,   Method: Composition-based stats.
 Identities = 102/351 (29%), Positives = 166/351 (47%), Gaps = 57/351 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           +A+  GG S+E E+S+ S ++ A+ L+   F +  I +  S   +               
Sbjct: 6   VALFFGGQSAEHEISIISAQSIAAHLDTERFTLLPIYITHSGEWLCDGFARTLLTTNLAS 65

Query: 46  -----------------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLE 76
                                        LA L  D+AF  LHG+FGEDG +Q  LE   
Sbjct: 66  KLRGSSREETAAALQQMVRNAAQAPCNRNLAALGVDVAFLALHGSFGEDGRMQGFLETCG 125

Query: 77  IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---------NRFTMDSQHLISPP 127
           IPYT  G+LASAL+MDK  +K  V+  G+ V     +         N      +  +S P
Sbjct: 126 IPYTGCGVLASALTMDKALTKLCVADAGIAVAQGTNILSADYLANPNAVEASVEAQVSYP 185

Query: 128 YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL 187
             +KP   GSS+GI  +   + +   L  + +     ++++E  V G E+   V+G+A  
Sbjct: 186 LFVKPASLGSSIGISKVHNREELHPALQAACAL--DWKVVVESTVKGREIEVAVLGNADP 243

Query: 188 DVTEIAV--PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
             +      P  +FY ++ KY   ++   +PA+IP  + +EV+R A  A++A+GC G++R
Sbjct: 244 IASVCGEIEPGKEFYDFQDKYMGNSAKLFIPARIPESLQEEVRRSALTAYRALGCSGMAR 303

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            DF  D  +  V   E+N  PG T +S++P+M   +G S+R L+  ++E A
Sbjct: 304 VDFFVDESTNSVVLNEVNTIPGFTDISMYPQMMEASGISYRNLITRLLELA 354


>gi|93006854|ref|YP_581291.1| D-alanine--D-alanine ligase [Psychrobacter cryohalolentis K5]
 gi|92394532|gb|ABE75807.1| D-alanine--D-alanine ligase [Psychrobacter cryohalolentis K5]
          Length = 379

 Score =  321 bits (823), Expect = 8e-86,   Method: Composition-based stats.
 Identities = 101/296 (34%), Positives = 156/296 (52%), Gaps = 8/296 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AV+ GG S+ER VSL SG A   AL++ G   +  D        L   + D  FNVLHG
Sbjct: 85  VAVIYGGNSNERSVSLDSGAAVLQALQNQGVDATHFDPKHQDITELR--QYDRVFNVLHG 142

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDGL+Q +L+  +IP T SGILASAL MDK+R+KQ+   CG+   P  L+   T   
Sbjct: 143 RGGEDGLLQGVLQWFDIPQTGSGILASALGMDKVRTKQLWQGCGLSTAPFSLLTADTDWQ 202

Query: 121 Q--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           Q  +++  P +IKP+  GSS+G+  +     +P     +     GD ++ E+++ G E T
Sbjct: 203 QVVNMLGLPLIIKPVHEGSSIGMTKVNNLDELPAAYATAV--QCGDVVMAERWITGREFT 260

Query: 179 CGVMGDASLDVTEIAVPK-SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
             ++ D +  V  +     ++FY +E KY+  ++++ +P  +     K +Q L+  A +A
Sbjct: 261 IVIIDDEAYPVIRLEPADITNFYDFEAKYNRNDTSYYIPCGLSAADEKHLQDLSLSAFRA 320

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +  +G  R D + D      + LEIN  PGMT  S+ P  A   G  F  L   ++
Sbjct: 321 VDAKGWGRIDAMQDEAGN-FWLLEINTVPGMTSHSLVPMAAKARGMDFESLCWHIL 375


>gi|152974076|ref|YP_001373593.1| D-alanyl-alanine synthetase A [Bacillus cereus subsp. cytotoxis NVH
           391-98]
 gi|189083031|sp|A7GKE0|DDL_BACCN RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|152022828|gb|ABS20598.1| D-alanine--D-alanine ligase [Bacillus cytotoxicus NVH 391-98]
          Length = 362

 Score =  321 bits (823), Expect = 8e-86,   Method: Composition-based stats.
 Identities = 93/346 (26%), Positives = 155/346 (44%), Gaps = 53/346 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           + +L GG S+E +VSL +  A   AL    F++  I +      +               
Sbjct: 6   LGLLYGGKSAEHQVSLQTALAAIKALNQEKFEIHPIYITEQGQWMRGERIEGEVTSVQAL 65

Query: 47  -------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81
                                         D+ F +LHG  GEDG VQ +LEL+ IPY  
Sbjct: 66  QMSGEANAISPVSLSTEIIPAPASKQEEAIDVIFPLLHGPNGEDGTVQGLLELMNIPYVG 125

Query: 82  SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKP 132
           +G+LASA  MDK+  K + +  G+         R   +          +  +  P  +KP
Sbjct: 126 NGVLASAAGMDKVVMKNIFAEAGLNQAKYTSFVRSVWEKNREEAYEKVEEALGYPCFVKP 185

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--DVT 190
              GSS+GI   K  + +     ++  ++   ++++E+ + G E+  GV+G+      V 
Sbjct: 186 ANLGSSVGINKCKDREELEKAFEEAFQFDR--KIIVEENIIGREVEVGVLGNDDPKCSVV 243

Query: 191 EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
              VPK +FY Y+ KY   ++  ++PA+I  +    +QR A  A QA+   G++R+DF  
Sbjct: 244 GEIVPKKEFYDYKSKYIDGDTALIIPAEITEEETATIQRDAIRAFQALDGAGLTRADFFL 303

Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                +V+  E+N  PG TP S+FP +  + G S+ EL+  ++  A
Sbjct: 304 TK-DGEVYINEVNTMPGFTPFSMFPLLWQHTGLSYPELIEELIRLA 348


>gi|295677462|ref|YP_003605986.1| D-alanine/D-alanine ligase [Burkholderia sp. CCGE1002]
 gi|295437305|gb|ADG16475.1| D-alanine/D-alanine ligase [Burkholderia sp. CCGE1002]
          Length = 318

 Score =  321 bits (823), Expect = 9e-86,   Method: Composition-based stats.
 Identities = 101/300 (33%), Positives = 154/300 (51%), Gaps = 11/300 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG+S+EREVS++SG+     L+D G      D        L       AFNVLHG
Sbjct: 12  VAVLSGGVSAEREVSINSGRLVLQGLQDGGVDAHLFDPSARPLSALKDEGFARAFNVLHG 71

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GE+G +Q  L+   I YT SG+L SAL +DK R+K V    G+P  P   V R     
Sbjct: 72  GYGENGQIQGALDFYGIHYTGSGVLGSALGLDKFRAKLVWQQLGIPTPPFEAVMRGDDYD 131

Query: 121 QHL------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD- 173
                    +  P  +KP   GSS+ +I +K    +   +  ++ +     +L+E+ ++ 
Sbjct: 132 ARARAIVAQLGLPLFVKPASEGSSVAVIKVKTAAKLSAAIAHAAKF--DTIVLVEKSIEG 189

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           G E T  + GD  L V  I VP  +FY Y+ KY S  + +++P  +       +Q LA  
Sbjct: 190 GGEYTACIAGDLDLPVILI-VPAGEFYDYDAKYISDTTQYLIPCGLTSSEEIRLQALARR 248

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           A + +GCR   R+DF+ D      ++LE+N  PGMT  S+ P+ A   G S+ EL++ ++
Sbjct: 249 AFEVLGCRDWGRADFMLDGEGN-PYFLEVNTAPGMTDHSLPPKAARAVGISYEELIMTVL 307


>gi|205351693|ref|YP_002225494.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|207855862|ref|YP_002242513.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|205271474|emb|CAR36291.1| D-alanine:D-alanine ligase A [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|206707665|emb|CAR31949.1| D-alanine:D-alanine ligase A [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
          Length = 364

 Score =  321 bits (823), Expect = 9e-86,   Method: Composition-based stats.
 Identities = 85/348 (24%), Positives = 164/348 (47%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50
           + ++ GG S+E EVSL S K    A++   F V  + +D++    +   +          
Sbjct: 6   VGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGIDKAGQWHVNDAENYLQNADDPA 65

Query: 51  ---------------------------------PDLAFNVLHGNFGEDGLVQAILELLEI 77
                                             D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  HIALRPSAISLAQVPGKHQHQLINAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR------FTMDSQHLISPPYVIK 131
           P+  S +L+SA  MDK  +K+++   G+ + P I + R         + +  +  P  +K
Sbjct: 126 PFVGSDVLSSAACMDKDIAKRLLRDAGLNIAPFITLTRTNRHAFSFAEVESRLGLPLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  +  +      +  +  ++H  ++++EQ + G E+ C V+G+ +   + 
Sbjct: 186 PANQGSSVGVSKVANEAQYQQAVALAFEFDH--KVVVEQGIKGREIECAVLGNDNPQAST 243

Query: 192 IA--VPKSDFYSYELKYSSLN-STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               V  S+FY+Y+ KY   N +  V+PA++P  +  +++ +A  A+Q +GC G++R D 
Sbjct: 244 CGEIVLNSEFYAYDTKYIDDNGAQVVVPAQLPSGVNDKIRAIAIQAYQTLGCAGMARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                  +V   EIN  PG T +S++P++   +G  + +L+  ++E A
Sbjct: 304 FLTA-DNEVVINEINTLPGFTNISMYPKLWQASGLGYTDLISRLIELA 350


>gi|134294649|ref|YP_001118384.1| D-alanine--D-alanine ligase [Burkholderia vietnamiensis G4]
 gi|190359124|sp|A4JB96|DDL_BURVG RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|134137806|gb|ABO53549.1| D-alanine--D-alanine ligase [Burkholderia vietnamiensis G4]
          Length = 313

 Score =  321 bits (823), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 102/300 (34%), Positives = 158/300 (52%), Gaps = 11/300 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL+SG+     L DAG      D        L       AFN LHG
Sbjct: 12  VAVLFGGESAEREVSLTSGRLVLQGLRDAGIDAHLFDPAERPLSALKDEGFVRAFNALHG 71

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118
            +GE+G +Q  L+   I YT SG+L SAL +DK R+K V    GVP  P   V R     
Sbjct: 72  GYGENGQIQGALDFYGIRYTGSGVLGSALGLDKFRTKLVWQQTGVPTPPFETVLRGDDYA 131

Query: 119 ----DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD- 173
               +    +  P  +KP   GSS+ ++ +K   ++P  L +++   H   +++E+ ++ 
Sbjct: 132 ARATEIVAKLGLPLFVKPASEGSSVAVLKVKTADALPAALSEAA--THDKIVIVEKSIEG 189

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           G E T  + GD  L + +I VP  +FY Y  KY + ++ +++P  +P     E++R+A  
Sbjct: 190 GGEYTACIAGDLDLPLIKI-VPAGEFYDYHAKYVADDTQYLIPCGLPAAQEAELKRIARR 248

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           A   +GC    R+DF+ D      ++LE+N  PGMT  S+ P+ A   G S+ EL++ ++
Sbjct: 249 AFDVLGCTDWGRADFMLDAAGNA-YFLEVNTAPGMTDHSLPPKAARSIGISYSELVVKVL 307


>gi|311280731|ref|YP_003942962.1| D-alanine/D-alanine ligase [Enterobacter cloacae SCF1]
 gi|308749926|gb|ADO49678.1| D-alanine/D-alanine ligase [Enterobacter cloacae SCF1]
          Length = 366

 Score =  321 bits (823), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 92/348 (26%), Positives = 160/348 (45%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44
           + V+ GG SSE EVSL S K    A++   F V  + +D+                    
Sbjct: 6   VGVVFGGKSSEHEVSLQSAKNIVEAMDKTRFDVVLLGIDKQGQWHINDASNYLLNDHDPA 65

Query: 45  ---------VLAHLK------------------PDLAFNVLHGNFGEDGLVQAILELLEI 77
                     LA +                    D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  HIALRPSDVTLAQIPGKESQQLINADSGQPLPAIDVIFPIVHGTLGEDGSLQGMLRMANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLISPPYVIK 131
           P+  S +L SA  MDK  +K+++   G+ + P I + R         +    +  P  +K
Sbjct: 126 PFVGSDVLGSAACMDKDVTKRLLRDAGLSIAPFITLTRANRERVTFAEVSEKLGLPLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  +K +      +  +  ++H  ++++EQ + G E+ C V+G+     + 
Sbjct: 186 PANQGSSVGVSKVKNEAQYQQAVALAFEFDH--KVVVEQGIIGREIECAVLGNDEPQAST 243

Query: 192 IA--VPKSDFYSYELKYSSLN-STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               V  S+FY+Y+ KY   N +  V+PA I   I  +++ +A  A+Q +GC G++R D 
Sbjct: 244 CGEIVLNSEFYAYDTKYIDDNGAQVVVPADISPAINDKIRAIAIQAYQTLGCSGMARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              P    V   EIN  PG T +S++P++   +G  +R L+  +++ A
Sbjct: 304 FLTP-ENDVVINEINTLPGFTNISMYPKLWQASGLDYRSLISRLIDLA 350


>gi|198244109|ref|YP_002214333.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|197938625|gb|ACH75958.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
          Length = 364

 Score =  320 bits (822), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 85/348 (24%), Positives = 164/348 (47%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50
           + ++ GG S+E EVSL S K    A++   F V  + +D++    +   +          
Sbjct: 6   VGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGIDKAGQWHVNDAENYLQNADDPA 65

Query: 51  ---------------------------------PDLAFNVLHGNFGEDGLVQAILELLEI 77
                                             D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  HIALRPSAISLAQVPGKHQHQLINAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR------FTMDSQHLISPPYVIK 131
           P+  S +L+SA  MDK  +K+++   G+ + P I + R         + +  +  P  +K
Sbjct: 126 PFVGSDVLSSAACMDKDVAKRLLRDAGLNIAPFITLTRTNRHAFSFAEVESRLGLPLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  +  +      +  +  ++H  ++++EQ + G E+ C V+G+ +   + 
Sbjct: 186 PANQGSSVGVSKVANEAQYQQAVALAFEFDH--KVVVEQGIKGREIECAVLGNDNPQAST 243

Query: 192 IA--VPKSDFYSYELKYSSLN-STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               V  S+FY+Y+ KY   N +  V+PA++P  +  +++ +A  A+Q +GC G++R D 
Sbjct: 244 CGEIVLNSEFYAYDTKYIDDNGAQVVVPAQLPSGVNDKIRAIAIQAYQTLGCAGMARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                  +V   EIN  PG T +S++P++   +G  + +L+  ++E A
Sbjct: 304 FLTA-DNEVVINEINTLPGFTNISMYPKLWQASGLGYTDLISRLIELA 350


>gi|119383949|ref|YP_915005.1| D-alanine--D-alanine ligase [Paracoccus denitrificans PD1222]
 gi|119373716|gb|ABL69309.1| D-alanine--D-alanine ligase [Paracoccus denitrificans PD1222]
          Length = 301

 Score =  320 bits (822), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 137/300 (45%), Positives = 201/300 (67%), Gaps = 3/300 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSER VSLSSG ACA  L  AG++V++++V   +   L  ++P + FN LHG
Sbjct: 5   VAVLMGGTSSERSVSLSSGHACAEGLAKAGYRVARVEVRDDIAEKLLQIRPSVVFNALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG VQ +LE L IPYTHSG++ASAL+M K+ +K V ++ GVPV  SI+V+     +
Sbjct: 65  TGGEDGAVQGLLENLGIPYTHSGVMASALAMHKINAKHVAAAHGVPVAESIVVSAADASA 124

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            H++  PYV+KP+  GSS G+ +++  ++ P  L  + + +    ++ E+YV G ELTC 
Sbjct: 125 SHVMQLPYVLKPVADGSSCGVHIVRSGEA-PPQLAANEAESAD--VMAERYVPGRELTCA 181

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V+G  +L + EI      +Y +  KY    S H+ PA +P DI +++ R + +AH+AIGC
Sbjct: 182 VLGGKALGIIEIVPKDGAWYDFSAKYEIGGSRHICPAVLPPDIEEKILRYSEIAHRAIGC 241

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           RG++RSDF  DP + ++ WLEIN QPGMTP+S+ PE+AA+ G +F  L+ W++EDAS  R
Sbjct: 242 RGVTRSDFRHDPDTGELIWLEINTQPGMTPISLLPEIAAHHGITFENLVSWIIEDASLRR 301


>gi|226356915|ref|YP_002786655.1| D-alanyl-alanine synthetase A [Deinococcus deserti VCD115]
 gi|226318905|gb|ACO46901.1| putative D-alanine--D-alanine ligase [Deinococcus deserti VCD115]
          Length = 339

 Score =  320 bits (822), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 95/337 (28%), Positives = 162/337 (48%), Gaps = 39/337 (11%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS------------------- 41
           + +L GG S E EVSL S ++  +AL    F V+ + + +                    
Sbjct: 5   ILLLAGGQSGEHEVSLMSARSVLAALPRDQFDVTPVVISKQGRWLPPTGTQKALETGEAP 64

Query: 42  ------VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
                 +  V +    D  F +LHG  GEDG +Q +L L  IP+  SG+L SA+SMDK+ 
Sbjct: 65  GGGDLVLHRVASAEGYDAVFPLLHGPMGEDGTIQGLLTLAGIPFVGSGVLGSAVSMDKVM 124

Query: 96  SKQVVSSCGVPVCPSILVNRFTMDSQHL--------ISPPYVIKPLKGGSSLGIIVIKKD 147
           +KQV++S G+      L  R    SQ          +  P  +KP   GSS+GI  +   
Sbjct: 125 TKQVLASAGIAQVEWRLALRREWRSQPEVVTARATELGFPLFVKPANLGSSVGISKVSHT 184

Query: 148 QSIPLDLLQSSSWNHGDQLLIEQYV--DGIELTCGVMGDASLDVTEIAVP--KSDFYSYE 203
             +   L    +++   ++++E        E+  G++G+ +   + +      S+FY YE
Sbjct: 185 DDLQAALDL--AFSLDRRVILEAMTSHKPREVEVGILGNDAPVASPVGELSFDSEFYDYE 242

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            KY+   +   +PA++P D+ + V+ +A  A +A+ C G++R DF +   + ++F  E+N
Sbjct: 243 TKYTEGRAQMHIPARMPRDMSERVREMALQAFRALDCAGLARVDFFYVEETGELFLNEVN 302

Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
             PG T  S++P++   AG  + EL+  +V  A   R
Sbjct: 303 TMPGFTTTSMYPKLFEAAGIGYSELVTRLVTLALEER 339


>gi|34580724|ref|ZP_00142204.1| D-alanine--D-alanine ligase [Rickettsia sibirica 246]
 gi|28262109|gb|EAA25613.1| D-alanine--D-alanine ligase [Rickettsia sibirica 246]
          Length = 321

 Score =  320 bits (822), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 114/297 (38%), Positives = 187/297 (62%), Gaps = 3/297 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +A++ GG+S+EREVSL S +  + AL + G++V+ ID+   + + L  +KPD+ FN LHG
Sbjct: 25  IALMAGGMSAEREVSLVSSEGVSKALIELGYRVTFIDMGADIAVRLQEIKPDIVFNCLHG 84

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG +  +L ++ IPYTHSG+L+SAL+ DK+ S+    +  + +  SI+VN+     
Sbjct: 85  TYGEDGCLPGLLNIMRIPYTHSGVLSSALAFDKIHSRIWFLTNNINMAESIVVNKSDNIK 144

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  PYVIKPL  GSS+G+ VI  +            + +GDQ++IEQY+ G EL   
Sbjct: 145 NDPMKRPYVIKPLTQGSSIGVEVIFAEDDFNFA---DYDFPYGDQVIIEQYIKGRELQVA 201

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V+   +L   EI + K+ FY YE KY+   + H+ PA +P ++Y+++   +   ++ + C
Sbjct: 202 VLNGKALGALEIKLLKNRFYDYETKYTEGFADHLCPAPLPANLYEKLLIESEKLYKTMNC 261

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           +G +R++F+ +  + K++ LEIN  PGM P+SI PE+AAYAG +F  L+  +++ AS
Sbjct: 262 KGPARAEFILEEQTNKLYALEINTHPGMMPLSIVPEIAAYAGINFTNLIAEIIKTAS 318


>gi|192362236|ref|YP_001983383.1| D-alanine--D-alanine ligase [Cellvibrio japonicus Ueda107]
 gi|190688401|gb|ACE86079.1| D-alanine--D-alanine ligase [Cellvibrio japonicus Ueda107]
          Length = 328

 Score =  320 bits (822), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 100/304 (32%), Positives = 164/304 (53%), Gaps = 12/304 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VL GG+S+ERE+SL SG A  +ALEDAG     IDV  +V   +     D AF +LHG
Sbjct: 19  VGVLYGGLSAEREISLQSGAAVIAALEDAGIDHVAIDVGDNVIADIQAANIDRAFLMLHG 78

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV------SSCGVPVCPSILVN 114
             GEDG +QA+LE L IPYT S + +SAL+MDK+R+K +       S+  +P     ++ 
Sbjct: 79  PGGEDGRIQALLEFLHIPYTGSDVQSSALAMDKLRTKFLWCGYSQSSAQHLPTPEFAVLT 138

Query: 115 RFTMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
           R +     L  +    ++KP   GSS+G+  +K  + +    ++++  ++   +L E+ +
Sbjct: 139 RESDFVAELKRLGGEVMVKPANEGSSIGMSRVKTAEDLQAAFVKAT--DYQGSVLAERLI 196

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G E T  ++   +L    +    S FY +  KY + ++ ++ P  +  +  +E+++LA 
Sbjct: 197 VGAEYTVAILDGEALPPIRLETDHS-FYDFNAKYIAEDTRYICPCGLSAEKEQELKQLAL 255

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
            A   +GCRG  R D + D      + LE+N  PGMT  S+ P  A   G SF EL++ +
Sbjct: 256 TAFNVLGCRGWGRVDVMADAQQN-FYLLEVNTAPGMTSHSLVPMAAKAVGLSFTELVVTI 314

Query: 293 VEDA 296
           +  +
Sbjct: 315 LRAS 318


>gi|255525501|ref|ZP_05392437.1| D-alanine/D-alanine ligase [Clostridium carboxidivorans P7]
 gi|255510769|gb|EET87073.1| D-alanine/D-alanine ligase [Clostridium carboxidivorans P7]
          Length = 300

 Score =  320 bits (822), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 97/297 (32%), Positives = 157/297 (52%), Gaps = 9/297 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGGISSEREVSL+SGK          ++V  I +D+   ++      D AF  LHG
Sbjct: 3   IGVIMGGISSEREVSLNSGKEIVKYFNKEKYEVVPIVIDKKDDIIAKAKDIDFAFIALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI---LVNRFT 117
            FGEDG++QA+LE ++IPY+  G L S + MDK  +K+++ S G+     +    V    
Sbjct: 63  KFGEDGIIQAVLETMDIPYSGCGPLTSGICMDKDITKKLLRSAGINTADWLSVKSVEEID 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            D    +  P V+KP  GGSS+   +IKK Q I   +  +   ++  +++IE+Y+ G E+
Sbjct: 123 YDFIEKMEYPVVVKPNCGGSSVATNIIKKKQDIESAVRLAL--DYDTEVMIEKYIKGDEI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC +M    L +  I  PK++F+ Y  KY+   S  ++  +    +  +++ +A    + 
Sbjct: 181 TCCIMNGKVLPIIAIK-PKAEFFDYTAKYADGGSDEII-VQFEEGLQNKIEEMALKCWKV 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           + C    R D +        + LE+N  PGMT  S+FP+ A     S+ +LL  + E
Sbjct: 239 LKCSVYVRVDMIIKE--GVPYVLELNTLPGMTKNSLFPKSAKAVNMSYTDLLDKITE 293


>gi|91205776|ref|YP_538131.1| D-alanine--D-alanine ligase [Rickettsia bellii RML369-C]
 gi|122425436|sp|Q1RHX2|DDL_RICBR RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|91069320|gb|ABE05042.1| D-alanine--D-alanine ligase [Rickettsia bellii RML369-C]
          Length = 321

 Score =  320 bits (822), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 113/297 (38%), Positives = 185/297 (62%), Gaps = 3/297 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +A++ GG+S+EREVSL S +    AL +AG+KV+ ID+   + + L  +KPD+ FN LHG
Sbjct: 25  IALVAGGMSAEREVSLISAEGVGKALIEAGYKVTFIDMGADITVKLHEIKPDIVFNCLHG 84

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG +  +L ++ IPYTHSG+LAS+L+ DK+ S+    +  + +  SI++++     
Sbjct: 85  TYGEDGCLPGLLNIMRIPYTHSGVLASSLAFDKVHSRSWFLTNNINMAESIVISKGDNIK 144

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  PYVIKP   GSS+G+ VI ++         +  + +GD+++IE+Y+ G EL   
Sbjct: 145 TDPIKRPYVIKPFTQGSSIGVEVIFEEDDFNFA---NYDFPYGDEVIIEKYIKGRELQVA 201

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           ++   +L   EI + K+ FY YE KY+   + H+ PA +P DIY ++ + +   +  + C
Sbjct: 202 ILNGKALGALEIKLLKNRFYDYETKYTEGFAEHLCPAPLPTDIYDKLLKESEKIYNTMNC 261

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           +G +R +F+ +  + K++ LEIN  PGMTP+SI PE+AAY G  F  L+  +++ AS
Sbjct: 262 KGAARVEFILEDGTNKLYALEINTHPGMTPLSIVPEIAAYHGIDFVNLIEEILKTAS 318


>gi|197261642|ref|ZP_03161716.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|197239897|gb|EDY22517.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
          Length = 364

 Score =  320 bits (822), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 86/348 (24%), Positives = 163/348 (46%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50
           + ++ GG S+E EVSL S K    A++   F V  + +D++    +   +          
Sbjct: 6   VGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGIDKAGQWHVNDAENYLQNADDPA 65

Query: 51  ---------------------------------PDLAFNVLHGNFGEDGLVQAILELLEI 77
                                             D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  HIALRPSAISLAQVPGKHQHQLINAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR------FTMDSQHLISPPYVIK 131
           P+  S +L+SA  MDK  +K+++   G+ + P I + R         + +  +  P  +K
Sbjct: 126 PFVGSDVLSSAACMDKDVAKRLLRDAGLNIAPFITLTRTNRHAFSFAEVESRLGLPLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  +  +      +  +  ++H  ++++EQ + G E+ C V+G+ +   + 
Sbjct: 186 PANQGSSVGVSKVANEAQYQQAVALAFEFDH--KVVVEQGIKGREIECAVLGNDNPQAST 243

Query: 192 IA--VPKSDFYSYELKYSSLN-STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               V  S FY+Y+ KY   N +  V+PA+IP  +  +++ +A  A+Q +GC G++R D 
Sbjct: 244 CGEIVLNSGFYAYDTKYIDDNGAQVVVPAQIPSGVNDKIRAIAIQAYQTLGCAGMARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                  +V   EIN  PG T +S++P++   +G  + +L+  ++E A
Sbjct: 304 FLTA-DNEVVINEINTLPGFTNISMYPKLWQASGLGYTDLISRLIELA 350


>gi|154684959|ref|YP_001420120.1| D-alanyl-alanine synthetase A [Bacillus amyloliquefaciens FZB42]
 gi|190359113|sp|A7Z1L3|DDL_BACA2 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|154350810|gb|ABS72889.1| Ddl [Bacillus amyloliquefaciens FZB42]
          Length = 354

 Score =  320 bits (822), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 88/342 (25%), Positives = 148/342 (43%), Gaps = 53/342 (15%)

Query: 5   MGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL------------------ 46
            GG S+E  VSL +  A   AL    F +  I +                          
Sbjct: 2   YGGKSAEHNVSLQTALAVTKALNTEKFDIHPIYITEKGEWQRGPLLTEPVSNVKMLQLEQ 61

Query: 47  ---------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
                                     D+ F +LHG  GEDG +Q +LELL +PY  +G+L
Sbjct: 62  NGESFALSALNREMFPEASPDEKAPIDVVFPLLHGPNGEDGTIQGLLELLNVPYVGNGVL 121

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGG 136
           AS+  MDK+  K + +  G+P        +              +  +  P  +KP   G
Sbjct: 122 ASSAGMDKVIMKHLFAQAGLPQAKYAAFLKKDWKQTPDSCLQQVEKELGYPCFVKPANLG 181

Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV-- 194
           SS+GI   +  + +        ++ +  ++++E+ + G E+  GV+G+     + +    
Sbjct: 182 SSVGISKCRNREELEKAF--ELAFEYDRKIVVEEGIAGREIEIGVLGNDEPKCSAVGEIA 239

Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
           PK+DFY Y+ KY   ++  ++PA++  + Y E+  +A  A +AI   G+ R+DF      
Sbjct: 240 PKTDFYDYKAKYEDGDTDLMIPAQVTDEQYAEISEMAIKAFKAIDGSGLVRADFFLTN-D 298

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            +V   E+N  PG TP S+FP +   AG  + +L+  +VE A
Sbjct: 299 GQVLINEVNTMPGFTPFSMFPLLWKEAGVDYSDLIEQLVELA 340


>gi|126665244|ref|ZP_01736227.1| D-alanylalanine synthetase [Marinobacter sp. ELB17]
 gi|126630614|gb|EBA01229.1| D-alanylalanine synthetase [Marinobacter sp. ELB17]
          Length = 342

 Score =  320 bits (821), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 100/297 (33%), Positives = 158/297 (53%), Gaps = 6/297 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AV MGG S+ER+VSL SG+A  SAL  AG     +DV   +   +   + D  F  LHG
Sbjct: 34  VAVFMGGDSAERDVSLKSGQAVLSALLSAGVNAFGVDVQGCLLKTVEQPEFDRVFIALHG 93

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +QAIL    IP+T S ++ASAL+MDK+R+K V + CG+       +      +
Sbjct: 94  RGGEDGTLQAILSQAGIPFTGSDVMASALAMDKLRTKYVFAGCGLATPKFRTMASAEDAN 153

Query: 121 --QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                +  P  +KP + GSS+GI  +     +      +++      +L+E++++G E T
Sbjct: 154 SIAAELRMPLSVKPSREGSSIGICKVTSAGELVQAWQAAAAL--DTSVLVEEWIEGPEFT 211

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             ++ D +L    ++     FY Y+ KY + ++ + +P  +  D    +Q+LA  A + +
Sbjct: 212 VSLLQDRALPAIGLSTDHV-FYDYDAKYLADDTRYCIPCGLSADEELRLQQLALEAFRVV 270

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           GCR   R D + D    K + LE+N  PGMT  S+ P  A  AG SF EL++ ++ D
Sbjct: 271 GCRTWGRVDIMQDA-DGKFWLLEVNTVPGMTDHSLVPMSARAAGISFEELVVRILAD 326


>gi|327479645|gb|AEA82955.1| D-alanine--D-alanine ligase [Pseudomonas stutzeri DSM 4166]
          Length = 314

 Score =  320 bits (821), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 108/298 (36%), Positives = 167/298 (56%), Gaps = 6/298 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL SG A  +AL+ AG     ID    +   L+  + D AF VLHG
Sbjct: 16  VAVLFGGRSAEREVSLKSGAAVLAALQAAGVDAFGIDAGDDLLQRLSSERIDRAFIVLHG 75

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--FTM 118
             GEDG +Q +LE   IPYT SGILASAL+MDK+R+KQV  S G+P     ++       
Sbjct: 76  RGGEDGSMQGLLECAGIPYTGSGILASALAMDKLRTKQVWQSLGLPTPRHAVLASEVDCQ 135

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +  ++  P ++KP   GSS+G+  +     +      +S+  +  Q+L+EQ++ G E T
Sbjct: 136 AAAQMLGFPLIVKPAHEGSSIGMAKVGDVAELIAAWRAASA--YDAQVLVEQWIHGPEFT 193

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             V+    L    +  P + FY Y+ KY + ++ + +P  +     +E++ L+  A +A+
Sbjct: 194 VAVLHGEVLPPIGLGTPHT-FYDYDAKYLASDTQYRIPCGLDAAREEELKVLSARACEAV 252

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           G RG +R D + D      + LE+N  PGMT  S+ P  A  AG  F++L+L +++D+
Sbjct: 253 GIRGWARVDVMQDAEGN-FWLLEVNTVPGMTDHSLVPMAARAAGLDFQQLVLSILDDS 309


>gi|56964671|ref|YP_176402.1| D-alanyl-alanine synthetase A [Bacillus clausii KSM-K16]
 gi|81365565|sp|Q5WDW9|DDL_BACSK RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|56910914|dbj|BAD65441.1| D-alanine--D-alanine ligase A [Bacillus clausii KSM-K16]
          Length = 368

 Score =  320 bits (821), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 87/348 (25%), Positives = 161/348 (46%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           + ++ GG S+E EVSL S K    A++   F V+ I +D+     +              
Sbjct: 6   VGIIFGGKSAEHEVSLQSAKNIVEAIDKDRFDVTLIGIDKQGQWHINEASNFLLNADNPA 65

Query: 50  --------------------------------KPDLAFNVLHGNFGEDGLVQAILELLEI 77
                                           + D+ F ++HG  GEDG +Q +  L  +
Sbjct: 66  LIELNKSNQGVALIPGKEDRQLVGTANQSVLDQLDVVFPIVHGTLGEDGSLQGMFRLANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVIK 131
           P+  S +L SA+SMDK  +K+++   G+ V   +   R   ++         +  P  IK
Sbjct: 126 PFVGSNVLGSAVSMDKDIAKRLLQGAGLHVASGLTFTRAAKETIDFESIADQLGLPLFIK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+     +      + ++ S++H  ++LIE  + G E+ C V+G+     + 
Sbjct: 186 PANQGSSVGVNKATTEAEFTAAIEEAFSYDH--KVLIEAAIKGREIECAVLGNDYPKAST 243

Query: 192 IA--VPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               +P+  FYSY+ KY     +   +PA +P D+ + +Q +A  A++ + C G++R D 
Sbjct: 244 CGEILPQDGFYSYDAKYIDEDGAKLAIPADLPEDVNRRIQDIAIQAYKTLNCEGLARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                + +V   E+N  PG T +S++P++   +G S+++L+  ++E A
Sbjct: 304 FLTE-TGEVIINEVNTLPGFTKISMYPKLWEASGVSYQDLITTLIELA 350


>gi|119385134|ref|YP_916190.1| D-alanine--D-alanine ligase [Paracoccus denitrificans PD1222]
 gi|119374901|gb|ABL70494.1| D-alanine--D-alanine ligase [Paracoccus denitrificans PD1222]
          Length = 301

 Score =  320 bits (821), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 138/300 (46%), Positives = 201/300 (67%), Gaps = 3/300 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSER VSLSSG ACA  L  AG++V++++V   +   L  ++P + FN LHG
Sbjct: 5   VAVLMGGTSSERSVSLSSGHACAEGLARAGYRVARVEVRDDIAEKLLQIRPSVVFNALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG VQ +LE L IPYTHSG++ASAL+M K+ +K V ++ GVPV  SI+V+     +
Sbjct: 65  TGGEDGAVQGLLENLGIPYTHSGVMASALAMHKINAKHVAAAHGVPVAESIVVSAADASA 124

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            H++  PYV+KP+  GSS G+ +++  ++ P  L  + + +    ++ E+YV G ELTC 
Sbjct: 125 SHVMQLPYVLKPVADGSSCGVHIVRSGEA-PPQLATNEAESAD--VMAERYVPGRELTCA 181

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V+G  +L + EI      +Y +  KY    S H+ PA +P DI +++ R + +AH+AIGC
Sbjct: 182 VLGGEALGIIEIVPKDGAWYDFSAKYEIGGSRHICPAVLPPDIEEKILRYSEIAHRAIGC 241

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           RG++RSDF  DP + ++ WLEIN QPGMTP S+ PE+AA+ G +F +L+ W+VEDAS  R
Sbjct: 242 RGVTRSDFRHDPDTGELIWLEINTQPGMTPTSLLPEIAAHHGLTFEKLVSWIVEDASLRR 301


>gi|168240194|ref|ZP_02665126.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|194451264|ref|YP_002044411.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|194409568|gb|ACF69787.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|205340288|gb|EDZ27052.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
          Length = 364

 Score =  320 bits (821), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 85/348 (24%), Positives = 164/348 (47%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50
           + ++ GG S+E EVSL S K    A++   F V  + +D++    +   +          
Sbjct: 6   VGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGIDKAGQWHVNDAENYLQNADDPA 65

Query: 51  ---------------------------------PDLAFNVLHGNFGEDGLVQAILELLEI 77
                                             D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  HIALRPSAISLAQVPGKHQHQLINAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR------FTMDSQHLISPPYVIK 131
           P+  S +L+SA  MDK  +K+++   G+ + P I + R         + +  +  P  +K
Sbjct: 126 PFVGSDVLSSAACMDKDVAKRLLRDAGLNIAPFITLTRTNRHAFSFAEVESRLGLPLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  +  +      +  +  ++H  ++++EQ + G E+ C V+G+ +   + 
Sbjct: 186 PANQGSSVGVSKVANEAQYQQAVALAFEFDH--KVVVEQGIKGREIECAVLGNDNPQAST 243

Query: 192 IA--VPKSDFYSYELKYSSLN-STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               V  S+FY+Y+ KY   N +  V+PA++P  +  +++ +A  A+Q +GC G++R D 
Sbjct: 244 CGEIVLNSEFYAYDTKYIDDNGAQVVVPAQLPSGVNDKIRAIAIQAYQTLGCAGMARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                  +V   EIN  PG T +S++P++   +G  + +L+  ++E A
Sbjct: 304 FLTA-DNEVVINEINTLPGFTNISMYPKLWQASGLGYTDLISRLIELA 350


>gi|145219530|ref|YP_001130239.1| D-alanine--D-alanine ligase [Prosthecochloris vibrioformis DSM 265]
 gi|229485976|sp|A4SE28|DDL_PROVI RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|145205694|gb|ABP36737.1| D-alanine--D-alanine ligase [Chlorobium phaeovibrioides DSM 265]
          Length = 361

 Score =  320 bits (820), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 105/349 (30%), Positives = 167/349 (47%), Gaps = 55/349 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44
           +A+L GG S+E E+S+ S ++ A  +    ++V  I + R+                   
Sbjct: 6   VALLFGGRSAEHEISIISAQSVARHINPDHYRVVPIYITRNGRWYSEGIASSILELDIAA 65

Query: 45  ------------VLAHL--------------KPDLAFNVLHGNFGEDGLVQAILELLEIP 78
                        L  +                D+AF +LHG++GEDG +Q  L+ + IP
Sbjct: 66  LIRKSGTAAASLKLQEMVLASGQQPFSFTFAGIDIAFPILHGSYGEDGRIQGFLDTVAIP 125

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYV 129
           YT  G+ ASAL+MDK  SK  VS  G+ V P + V     +             +  P  
Sbjct: 126 YTGCGVTASALTMDKALSKLCVSEAGIAVAPGVTVLAGDWEKSPEQILSSIPETLIYPVF 185

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           +KP   GSS+GI  +     +P  L  +   N   ++LIEQ + G E+   V+G+     
Sbjct: 186 VKPAHLGSSVGISKVSVQGELPEALAHAC--NLDTKVLIEQAMHGKEIEVAVLGNNDPIA 243

Query: 190 TEIAV--PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           +      P SDFY Y+ KY    +   +PA++P ++ + VQ  A  A++A+GCRG++R D
Sbjct: 244 SACGEIEPGSDFYDYDDKYIHNTAKLFIPARLPEELSRRVQADALTAYRALGCRGMARVD 303

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           F  D  S +V + EIN  PG T +S++P++   AG +F EL   +++ A
Sbjct: 304 FFVDEKSGQVVFNEINTIPGFTDISMYPQLMEAAGIAFPELCDRLLQLA 352


>gi|291618995|ref|YP_003521737.1| DdlA [Pantoea ananatis LMG 20103]
 gi|291154025|gb|ADD78609.1| DdlA [Pantoea ananatis LMG 20103]
          Length = 365

 Score =  320 bits (820), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 93/348 (26%), Positives = 163/348 (46%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           + ++ GG SSE EVSL S K    A++   F+V  + +D+     L              
Sbjct: 6   VGIVFGGKSSEHEVSLQSAKNIVDAIDKTRFEVVLLGIDKQGQWHLNDASNFLLNAENPS 65

Query: 50  --------------------------------KPDLAFNVLHGNFGEDGLVQAILELLEI 77
                                           + D+ F V+HG  GEDG +Q +L +  +
Sbjct: 66  LIALNRTAKQVALIPGEPQNQVIDRKDAHPLSQLDVIFPVVHGTQGEDGSLQGLLRMASL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIK 131
           P+  S +L SA+SMDK  +K+++   G+ V P + V +  M++  +         P  IK
Sbjct: 126 PFVGSDVLGSAVSMDKDVTKRLLRDAGLKVAPWLSVTQAQMNNLDIEAVIARFGLPLFIK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  +    +    L    ++   +++LIE+ + G E+ C V+G+   + + 
Sbjct: 186 PANQGSSVGVSKVTTAAAFRAAL--ELAFRFDNKVLIEKGIKGREIECAVLGNDYPEASP 243

Query: 192 I--AVPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               V    FYSY+ KY S    H V+PA IP  + + ++ +A  A  A+ C G++R D 
Sbjct: 244 CGEVVVSDAFYSYDTKYISETGAHTVIPADIPAAVDEAIREVALTAFTALSCFGLARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            +     ++   E+N  PG T +S++P++   AG S+++L+  ++E A
Sbjct: 304 FYTE-DGEIIVNEVNTLPGFTNISMYPKLWQAAGLSYQDLITRLIELA 350


>gi|119513697|ref|ZP_01632695.1| D-alanylalanine synthetase [Nodularia spumigena CCY9414]
 gi|119461646|gb|EAW42685.1| D-alanylalanine synthetase [Nodularia spumigena CCY9414]
          Length = 355

 Score =  320 bits (820), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 90/339 (26%), Positives = 161/339 (47%), Gaps = 47/339 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASAL----EDAGFKVSQIDVDRSVGLVLAHL------- 49
           + +L GG S E EVS+SS +A A AL      + +++    + ++   +   +       
Sbjct: 6   VGLLFGGRSGEHEVSISSARAIAKALSAEENASKYEILPFYIQKNGCWLAGEIPQQVLET 65

Query: 50  --------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
                               + D+ F +LHG  GEDG +Q +L L+++P+  SG+L SAL
Sbjct: 66  GTPHLEDKNLNRWKLPEQVTQVDIWFPILHGPNGEDGTIQGLLTLMQVPFVGSGVLGSAL 125

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTM------------DSQHLISPPYVIKPLKGGS 137
            MDK+  K      G+P      + R  +            + +  +  P  +KP   GS
Sbjct: 126 GMDKIAMKMAFEQAGLPQVKYKALTRAEVWSNPCVFPKLCDEIEAALDYPCFVKPANLGS 185

Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP-- 195
           S+GI  ++  Q +   L  ++   +  ++++E  V   E+ C V+G+     + +     
Sbjct: 186 SVGIAKVRSRQELEAALDNAA--TYDRRIIVEAGVVAREVECAVLGNDQTKASIVGEITF 243

Query: 196 KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255
            SDFY YE KY+   +  ++PA IP  + +++Q +A  A  A+   G++R DF F   + 
Sbjct: 244 NSDFYDYETKYTVGQADLLIPAPIPDAVSRQIQDMALQAFAAVDAAGLARVDFFFVEATG 303

Query: 256 KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           ++   EIN  PG T  S++P++ A +G  F EL+  +++
Sbjct: 304 EILINEINTFPGFTATSMYPQLWAESGIPFPELVDRLIQ 342


>gi|295688573|ref|YP_003592266.1| D-alanine/D-alanine ligase [Caulobacter segnis ATCC 21756]
 gi|295430476|gb|ADG09648.1| D-alanine/D-alanine ligase [Caulobacter segnis ATCC 21756]
          Length = 319

 Score =  320 bits (820), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 146/304 (48%), Positives = 202/304 (66%), Gaps = 5/304 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG SSER+VSL SG  CA ALE  G KV++ID    +  VL   KPDL FN LHG
Sbjct: 11  IAVLLGGPSSERKVSLVSGAECADALERLGAKVTRIDAGPDIAQVLTAAKPDLVFNALHG 70

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG VQ +LE L++PYTHSG+LASAL+MDK ++K V+++ GV V    L NR  +  
Sbjct: 71  EWGEDGCVQGVLETLKLPYTHSGVLASALAMDKAKAKAVLAAAGVVVPGGGLFNRHDVAR 130

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            H++ PPYV+KP   GSS+G+ ++K+  + P + + + SW  G+++++E Y+ G+EL   
Sbjct: 131 DHVLPPPYVVKPNAEGSSVGVFIVKEGANRPPEEVGAPSWTFGEEVMVEPYIRGLELAVA 190

Query: 181 VMGD----ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           VMG+     +L VT+I    + FY YE KYS   S HVLPA IP  +     R+A LAH 
Sbjct: 191 VMGEANGPRALAVTDIR-ASTGFYDYEAKYSEGGSIHVLPAPIPDGVRDRAMRMAELAHT 249

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           A+GCR ++RSD  +D ++  +  LE+N QPGMTP S+ PE AA+ G  F +L+LW+VEDA
Sbjct: 250 ALGCRSVTRSDLRYDDINDILVLLEVNTQPGMTPTSLAPEQAAHVGIPFDQLVLWIVEDA 309

Query: 297 SCLR 300
              R
Sbjct: 310 YARR 313


>gi|168465461|ref|ZP_02699343.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|195631722|gb|EDX50242.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
          Length = 364

 Score =  320 bits (820), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 86/348 (24%), Positives = 164/348 (47%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50
           + ++ GG S+E EVSL S K    A++   F V  + +D++    +   +          
Sbjct: 6   VGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGIDKAGQWHVNDAENYLQNADDPA 65

Query: 51  ---------------------------------PDLAFNVLHGNFGEDGLVQAILELLEI 77
                                             D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  HIALRPSAISLAQVPGKHQHQLINAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR------FTMDSQHLISPPYVIK 131
           P+  S +L+SA  MDK  +K+++   G+ + P I + R         + +  +  P  +K
Sbjct: 126 PFVGSDVLSSAACMDKDVAKRLLRDAGLNIAPFITLTRTNRHAFSFAEVESRLGLPLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  +  +      +  +  ++H  ++++EQ + G E+ C V+G+ +   + 
Sbjct: 186 PANQGSSVGVSKVANEAQYQQAVALAFEFDH--KVVVEQGIKGREIECAVLGNDNPQAST 243

Query: 192 IA--VPKSDFYSYELKYSSLN-STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               V  S+FY+Y+ KY   N +  V+PA+IP  +  +++ +A  A+Q +GC G++R D 
Sbjct: 244 CGEIVLNSEFYAYDTKYIDDNGAQVVVPAQIPSGVNDKIRAIAIQAYQTLGCAGMARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                  +V   EIN  PG T +S++P++   +G  + +L+  ++E A
Sbjct: 304 FLTA-DNEVVINEINTLPGFTNISMYPKLWQASGLGYTDLISRLIELA 350


>gi|327395333|dbj|BAK12755.1| D-alanine--D-alanine ligase A DdlA [Pantoea ananatis AJ13355]
          Length = 365

 Score =  320 bits (820), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 93/348 (26%), Positives = 163/348 (46%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           + ++ GG SSE EVSL S K    A++   F+V  + +D+     L              
Sbjct: 6   VGIVFGGKSSEHEVSLQSAKNIVDAIDKTRFEVVLLGIDKQGQWHLNDASNFLLNAENPS 65

Query: 50  --------------------------------KPDLAFNVLHGNFGEDGLVQAILELLEI 77
                                           + D+ F V+HG  GEDG +Q +L +  +
Sbjct: 66  LIALNRTAKQVALIPGEPQNQIIDRMDAHPLSQLDVIFPVVHGTQGEDGSLQGLLRMASL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIK 131
           P+  S +L SA+SMDK  +K+++   G+ V P + V +  M++  +         P  IK
Sbjct: 126 PFVGSDVLGSAVSMDKDVTKRLLRDAGLKVAPWLSVTQAQMNNLDIEAVIARFGLPLFIK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  +    +    L    ++   +++LIE+ + G E+ C V+G+   + + 
Sbjct: 186 PANQGSSVGVSKVTTAAAFRAAL--ELAFRFDNKVLIEKGIKGREIECAVLGNDYPEASP 243

Query: 192 I--AVPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               V    FYSY+ KY S    H V+PA IP  + + ++ +A  A  A+ C G++R D 
Sbjct: 244 CGEVVVSDAFYSYDTKYISETGAHTVIPADIPAAVDEAIREVALTAFTALSCFGLARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            +     ++   E+N  PG T +S++P++   AG S+++L+  ++E A
Sbjct: 304 FYTE-DGEIIVNEVNTLPGFTNISMYPKLWQAAGLSYQDLITRLIELA 350


>gi|327475201|gb|AEA77195.1| D-alanyl-alanine synthetase A [Bacillus aquimaris]
          Length = 357

 Score =  320 bits (820), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 94/340 (27%), Positives = 157/340 (46%), Gaps = 49/340 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI-------------------DVDR- 40
           + +L GG S+E  VSL + KA   AL+   F +  I                   DV   
Sbjct: 5   LCLLYGGKSAEHNVSLQTAKAVIGALDLNKFDIHPIFISTEGEWMKGPQLNAPVKDVKEL 64

Query: 41  ---------------SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
                          S+         D+ F +LHG  GEDG VQ +LELL +PY  +G+L
Sbjct: 65  QFNNGEEISPNALSTSISSSEKGEGYDMIFPLLHGPNGEDGTVQGMLELLNLPYVGNGVL 124

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGG 136
           AS+  MDK+  K + +  G+P        R T  +         +  I  P  +KP   G
Sbjct: 125 ASSAGMDKVIMKNLFAQAGIPQVNYTWFIRSTWKANEEQAYESVEKEIGYPCFVKPANLG 184

Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--DVTEIAV 194
           SS+GI        +     ++  ++   +++IE+ V   E+  GV+G+      V    V
Sbjct: 185 SSVGISKCSSRDELAKAFQEAFQFDR--KIIIEEGVKAREIEIGVLGNDQPQCSVPGEIV 242

Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
           PK+DFY Y+ KY   ++  ++PA++  D+  +++ +A  + +A+ C G+ R+DF      
Sbjct: 243 PKTDFYDYKSKYEDGDTALIIPAEVEEDVADKMKEIAIQSFKALDCSGLVRADFFLTE-D 301

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            +++  E+N  PG TP S+FP +  + G  +  L+  +V+
Sbjct: 302 GRIYMNEVNTMPGFTPYSMFPLLWKHTGVDYPTLIGKLVD 341


>gi|15896148|ref|NP_349497.1| D-alanyl-alanine synthetase A [Clostridium acetobutylicum ATCC 824]
 gi|25452916|sp|Q97F58|DDL_CLOAB RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|15025943|gb|AAK80837.1|AE007787_3 D-alanine-D-alanine ligase [Clostridium acetobutylicum ATCC 824]
 gi|325510303|gb|ADZ21939.1| D-alanine-D-alanine ligase [Clostridium acetobutylicum EA 2018]
          Length = 343

 Score =  320 bits (820), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 80/336 (23%), Positives = 164/336 (48%), Gaps = 41/336 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------------------- 40
           +A+L GG S+E EVS  S  +    ++ + + +  I + +                    
Sbjct: 5   VAILFGGQSTEHEVSRVSAASVLRNIDTSKYDLFPIGITKKGEWFEYTGSADKIENGEWE 64

Query: 41  --------SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
                   +   +L + + D+ F V+HG +GEDG +Q + +L+ +P     +L+S++ MD
Sbjct: 65  KDEFYKSPNGQAILFNKEVDVVFPVMHGLYGEDGTIQGLCKLVGVPCVGPSVLSSSVCMD 124

Query: 93  KMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPLKGGSSLGIIV 143
           K+ +K V+    +     ++V+             + ++ +     IKP   GSS+GI  
Sbjct: 125 KVYTKYVLEHFNIKQADYVVVHAHEYKTSKEEIIKEIENKLGYAVFIKPSNSGSSVGITK 184

Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD--VTEIAVPKSDFYS 201
               + +   L    +  +  ++L+E+ ++  E+   V+G+      +    VP  +FY 
Sbjct: 185 AHNRKELEAGL--EEAMKYDRKILVEEALNAREIEVAVLGNEEPKAAIPGEIVPAKEFYD 242

Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
           YE KY +  S  ++PA +  +  ++++ +A   ++A+ C G+SR DFL D  + +++  E
Sbjct: 243 YEAKYENAASKLLIPANLSNENLEKIKNIAIEVYKALDCSGMSRVDFLVDKDTTEMYLNE 302

Query: 262 INVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           +N  PG T +S++P++ A AG  + +L+  ++E A+
Sbjct: 303 VNTIPGFTSISMYPKLWAAAGKDYSKLIDELIELAA 338


>gi|254518063|ref|ZP_05130119.1| D-Ala-D-Ala ligase B [Clostridium sp. 7_2_43FAA]
 gi|226911812|gb|EEH97013.1| D-Ala-D-Ala ligase B [Clostridium sp. 7_2_43FAA]
          Length = 299

 Score =  320 bits (820), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 101/299 (33%), Positives = 159/299 (53%), Gaps = 8/299 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VLMGGISSEREVSL+SG +    +    ++V  + +D+   ++      D A   LHG
Sbjct: 3   VGVLMGGISSEREVSLNSGNSMMQHINKEKYEVIPVIIDKKEDVIEKVRDIDFALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN---RFT 117
            FGEDG VQA+LE L IPY+    L+S+L MDK  +K ++ + G+     + V       
Sbjct: 63  KFGEDGTVQAVLETLGIPYSGCNTLSSSLCMDKDLTKTILKANGIRTARWLNVRSIEEID 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
             +   I  P  IKP  GGSS+    I K + +   + +   W   ++++IE+++ G E+
Sbjct: 123 YAAIEEIGYPVFIKPTNGGSSVATFKITKKEDVENAVREGLKW--DNEVMIEEFIKGDEI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC V  +    V  I   K+DFY YE KYS+  + H     +  DI+ EV+++A   ++A
Sbjct: 181 TCPVFENEMFPVLAIK-AKTDFYDYEQKYSANGAEH-YAINLEKDIHSEVEKMALDTYKA 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           + C   +R D +        + LE+N  PGMT  S+FP+ A   G S+ E +  ++E +
Sbjct: 239 LKCSVYARIDMIITE-EGVPYVLEVNTLPGMTATSLFPQSAGEKGISYSEFIDMIIEHS 296


>gi|269101957|ref|ZP_06154654.1| hypothetical D-alanine-D-alanine ligase B [Photobacterium damselae
           subsp. damselae CIP 102761]
 gi|268161855|gb|EEZ40351.1| hypothetical D-alanine-D-alanine ligase B [Photobacterium damselae
           subsp. damselae CIP 102761]
          Length = 303

 Score =  319 bits (819), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 102/301 (33%), Positives = 169/301 (56%), Gaps = 10/301 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VL GG SSEREVSL SG    +A+E  G +   +D       +L   K D  F  LHG
Sbjct: 3   IGVLYGGDSSEREVSLKSGTRIIAAIESLGHEAIHLDPRYIDLSMLGFYKLDKVFIALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF--TM 118
             GE G VQ++L++L+IPY  SG+LASA+S++K+++K++  + G+   P +LV +    +
Sbjct: 63  GMGESGHVQSLLDILQIPYIGSGVLASAISLNKLKTKEIWQANGLITAPWVLVQKTMPQV 122

Query: 119 DSQHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175
           D   L   ++ P V+KPL  G S+G+     +  +   LL  +++ +  ++L+EQ++ G 
Sbjct: 123 DIMALCSELTFPVVVKPLNQGCSIGVAKADNEVQLWDALL--AAFEYDTEVLVEQFIVGR 180

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
           E TC V+   +L V +I     +F+ +  K+ + ++T+  P+ +     + +Q     A+
Sbjct: 181 EYTCAVLNGEALPVVQIC--SEEFFDWNAKFGTQSATYHCPSDLTAIEEQTMQETILAAY 238

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           QA+GCRG  R D L       V+ +E+N  PGMT  S+FP  AA  G S+  L+  +++ 
Sbjct: 239 QALGCRGWGRIDVLLTEH-NDVYLIEMNTIPGMTERSVFPMAAAQVGLSYEALIEQLLDH 297

Query: 296 A 296
           A
Sbjct: 298 A 298


>gi|34497927|ref|NP_902142.1| D-alanyl-alanine synthetase A [Chromobacterium violaceum ATCC
           12472]
 gi|39930968|sp|Q7NV72|DDLA_CHRVO RecName: Full=D-alanine--D-alanine ligase A; AltName:
           Full=D-Ala-D-Ala ligase A; AltName: Full=D-alanylalanine
           synthetase A
 gi|34103782|gb|AAQ60143.1| D-alanine-D-alanine ligase [Chromobacterium violaceum ATCC 12472]
          Length = 366

 Score =  319 bits (819), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 97/348 (27%), Positives = 168/348 (48%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           + ++ GG SSE EVSL S +    A++   F+VS I VD+      +             
Sbjct: 6   VGLIFGGQSSEHEVSLQSARNILQAIDGERFEVSLIGVDKQGRWHASQASNFLLNADDPG 65

Query: 50  --------------------------------KPDLAFNVLHGNFGEDGLVQAILELLEI 77
                                           + D+AF ++HG  GEDG +Q +L +  I
Sbjct: 66  RIALRESGENLALVPGECSGQLQTAANAHPLAQIDVAFPIVHGTLGEDGSLQGLLRMANI 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIK 131
           P+  +G+L SA+ MDK  +K+++   G+ V P + + R       L      +  P  +K
Sbjct: 126 PFVGAGVLGSAVCMDKDVAKRLLRDAGLKVAPFVSLTRSKAAGADLSAIVEQLGLPLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  +K++  +   L +  ++ +  ++L+EQ V G E+ C V+G+     + 
Sbjct: 186 PANQGSSVGVSKVKREADLRAALDE--AFRYDHKVLVEQAVIGREIECAVLGNERPRASG 243

Query: 192 IA--VPKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               V   +FY+Y+ KY + +   V +PA IP +  + ++ +A  A QA+ C G++R D 
Sbjct: 244 CGEIVLSDEFYAYDTKYLNEDGARVAVPADIPDEACQRIRGIAIEAFQALECSGMARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              P   +V   E+N  PG T +S++P++   AG S+REL+  ++E A
Sbjct: 304 FLTP-DGEVVINELNTLPGFTNISMYPKLWQAAGMSYRELITALIELA 350


>gi|146281470|ref|YP_001171623.1| D-alanine--D-alanine ligase [Pseudomonas stutzeri A1501]
 gi|190359206|sp|A4VII0|DDL_PSEU5 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|145569675|gb|ABP78781.1| D-alanine--D-alanine ligase [Pseudomonas stutzeri A1501]
          Length = 314

 Score =  319 bits (819), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 107/298 (35%), Positives = 166/298 (55%), Gaps = 6/298 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL SG A  +AL+ AG     ID    +   L+  + D AF VLHG
Sbjct: 16  VAVLFGGKSAEREVSLKSGAAVLAALQAAGVDAFGIDAGDDLLQRLSSERIDRAFIVLHG 75

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--FTM 118
             GEDG +Q +LE   IPYT SGILASAL+MDK+R+KQV  S G+P     ++       
Sbjct: 76  RGGEDGSMQGLLECAGIPYTGSGILASALAMDKLRTKQVWQSLGLPTPRHAVLASEVDCQ 135

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +  ++  P ++KP   GSS+G+  +     +      +S+  +  Q+L+EQ++ G E T
Sbjct: 136 AAAQMLGFPLIVKPAHEGSSIGMAKVGDVAELIAAWRAASA--YDAQVLVEQWIQGPEFT 193

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             V+    L    +  P + FY Y+ KY + ++ + +P  +     + ++ L+  A +A+
Sbjct: 194 VAVLHGEVLPPIGLGTPHT-FYDYDAKYLASDTQYRIPCGLDAAREEALKVLSARACEAV 252

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           G RG +R D + D      + LE+N  PGMT  S+ P  A  AG  F++L+L +++D+
Sbjct: 253 GIRGWARVDVMQDAEGN-FWLLEVNTVPGMTDHSLVPMAARAAGLDFQQLVLSILDDS 309


>gi|323976140|gb|EGB71233.1| D-alanine-D-alanine ligase [Escherichia coli TW10509]
          Length = 364

 Score =  319 bits (819), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 88/348 (25%), Positives = 165/348 (47%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50
           + ++ GG S+E EVSL S K    A++ + F V  + +D+     ++             
Sbjct: 6   VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDANNYLLNADDPA 65

Query: 51  ---------------------------------PDLAFNVLHGNFGEDGLVQAILELLEI 77
                                             D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  HIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR------FTMDSQHLISPPYVIK 131
           P+  S +LASA  MDK  +K+++   G+ + P I + R         + +  +  P  +K
Sbjct: 126 PFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRTNRQNISFAEVKSKLGLPLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  +  ++   + +  +  ++H  ++++EQ + G E+ C V+G+ +   + 
Sbjct: 186 PANQGSSVGVSKVTSEEEYAIAVDLAFEFDH--KVIVEQGIKGREIECAVLGNDNPQAST 243

Query: 192 IA--VPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               V  SDFY+Y+ KY     +  V+PA I  +I  +++ +A  A+Q +GC G++R D 
Sbjct: 244 CGEIVLTSDFYAYDTKYIDEDGAKVVVPAAITPEINDKIRAIAVQAYQTLGCAGMARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              P   +V   EIN  PG T +S++P++   +G  + +L+  ++E A
Sbjct: 304 FLTP-ENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350


>gi|157828212|ref|YP_001494454.1| D-alanine--D-alanine ligase [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|165932915|ref|YP_001649704.1| D-alanine--D-alanine ligase [Rickettsia rickettsii str. Iowa]
 gi|166198503|sp|A8GRC1|DDL_RICRS RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|189083047|sp|B0BWS2|DDL_RICRO RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|157800693|gb|ABV75946.1| D-alanine--D-alanine ligase [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|165908002|gb|ABY72298.1| D-alanine--D-alanine ligase [Rickettsia rickettsii str. Iowa]
          Length = 321

 Score =  319 bits (819), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 113/297 (38%), Positives = 187/297 (62%), Gaps = 3/297 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +A++ GG+S+EREVSL S +  + AL + G++V+ ID+   + + L  +KPD+ FN LHG
Sbjct: 25  IALMAGGMSAEREVSLVSSEGVSKALIELGYRVTFIDMGADIAVRLQEIKPDIVFNCLHG 84

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG +  +L ++ IPYTHSG+L+SAL+ DK+ S+    +  + +  SI+VN+     
Sbjct: 85  TYGEDGGLPGLLNIMRIPYTHSGVLSSALAFDKIHSRIWFLTNNINMAESIVVNKSDNIK 144

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  PYVIKPL  GSS+G+ VI  +            + +GDQ++IEQY+ G EL   
Sbjct: 145 NDPMKRPYVIKPLTQGSSIGVEVIFAEDDFNFA---DYDFPYGDQVIIEQYIKGRELQVA 201

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V+   +L   EI + K+ FY YE KY++  + H+ PA +P ++Y+++   +   ++ + C
Sbjct: 202 VLNGKALGALEIKLLKNRFYDYETKYTAGFADHLCPAPLPANLYEKLLIESEKIYKTMNC 261

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           +G +R++F+ +  + K++ LEIN  PGM  +SI PE+AAYAG +F  L+  +++ AS
Sbjct: 262 KGPARAEFILEEQTNKLYALEINTHPGMMSLSIVPEIAAYAGINFTNLIEEIIKTAS 318


>gi|308188188|ref|YP_003932319.1| D-alanine-D-alanine ligase A [Pantoea vagans C9-1]
 gi|308058698|gb|ADO10870.1| D-alanine-D-alanine ligase A [Pantoea vagans C9-1]
          Length = 365

 Score =  319 bits (819), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 92/348 (26%), Positives = 164/348 (47%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           + ++ GG S+E EVSL S K    A++   F V  + +D+     L              
Sbjct: 6   VGIVFGGKSAEHEVSLQSAKNILEAIDKTRFDVVLLGIDKQGHWRLNDASNFLLNAENPA 65

Query: 50  --------------------------------KPDLAFNVLHGNFGEDGLVQAILELLEI 77
                                           + D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  LIALNHAAEDVALVPGNTQQQIITRHNAHPLSQIDVIFPIVHGTLGEDGSLQGLLRMASL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN---RFTMDSQHLI---SPPYVIK 131
           P+  S +L SA+SMDK  +K+++   G+ V P + V    R  +D++ +I     P  IK
Sbjct: 126 PFVGSDVLGSAVSMDKDFTKRLLRDAGLNVAPWLSVTQAQRAQLDAEAVIARFGLPLFIK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  +   +     L  + S++   ++LIEQ + G E+ C V+G+ + + + 
Sbjct: 186 PANQGSSVGVSKVDSIEEFDAALALAFSFDR--KVLIEQGIKGREIECAVLGNDAPEASP 243

Query: 192 I--AVPKSDFYSYELKYSSLN-STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               V    FYSY+ KY S + +  V+PA I  +    ++ +A  A  A+ C G++R D 
Sbjct: 244 CGEVVVHDAFYSYDTKYISESGAQTVVPAAIAAETSDAIRDVAIKAFSALECFGMARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                  ++   E+N  PG T +S++P++   AG S+++L+  +++ A
Sbjct: 304 FLTN-DGEIIVNEVNTLPGFTNISMYPKLWQAAGLSYQDLISRLIDLA 350


>gi|70732508|ref|YP_262271.1| D-alanyl-alanine synthetase A [Pseudomonas fluorescens Pf-5]
 gi|68346807|gb|AAY94413.1| D-alanine--D-alanine ligase [Pseudomonas fluorescens Pf-5]
          Length = 364

 Score =  319 bits (818), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 92/348 (26%), Positives = 158/348 (45%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           + ++ GG S+E EVSL S +    AL+   F+   I +D+     L              
Sbjct: 6   VGIIFGGRSAEHEVSLQSARNIVDALDRTRFEPVLIGIDKQGHWHLNDTSNFLINQENPA 65

Query: 49  -------------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEI 77
                                             D+ F ++HG  GEDG +Q +L + ++
Sbjct: 66  LIALNQSNRELAVVPGKASQQLVETSSQELLGHVDVIFPIVHGTLGEDGCLQGLLRMADL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD------SQHLISPPYVIK 131
           P+  S +L SA+ MDK  SK+++   G+ V P I + R T        ++  +  P  +K
Sbjct: 126 PFVGSDVLGSAVCMDKDISKRLLRDAGLAVTPFITLTRATRARYGFARARETLGLPLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  +  +      +  +  ++H  ++L+E  V G E+ C V+G+     + 
Sbjct: 186 PANQGSSVGVSKVDNEAEYEAAVELALGFDH--KVLVESAVRGREIECAVLGNDQPIASG 243

Query: 192 IA--VPKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               V  + FYSY+ KY    +  V +PA I ++  + ++ LA  A Q +GC G++R D 
Sbjct: 244 CGEIVVSNGFYSYDSKYIDGEAAQVLVPADISIEHSERIRALAVEAFQVLGCSGLARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                  +V   EIN  PG T +S++P++    G S+ EL+  ++E A
Sbjct: 304 FLT-DEGEVLINEINSLPGFTRISMYPKLWQATGMSYSELVSRLIELA 350


>gi|162455138|ref|YP_001617505.1| D-alanine-D-alanine ligase B [Sorangium cellulosum 'So ce 56']
 gi|161165720|emb|CAN97025.1| D-alanine-D-alanine ligase B [Sorangium cellulosum 'So ce 56']
          Length = 345

 Score =  319 bits (818), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 113/305 (37%), Positives = 165/305 (54%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR----SVGLVLAHLKPDLAFN 56
           + V+MGG S ER+VSL SG A A ALE  G+ V +I +       +   L   + D AF 
Sbjct: 10  VGVVMGGSSGERDVSLRSGAAVAEALEARGYDVVRITLGDRFGAELCATLQRARLDAAFL 69

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--- 113
            LHG  GEDG VQ +LEL ++PYT S +LASAL+MDK+++K++     VP  P   V   
Sbjct: 70  ALHGRLGEDGCVQGVLELAQVPYTGSSVLASALAMDKLKAKEMFRLHNVPTPPYYTVGAN 129

Query: 114 -NRFTMDSQH-LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
            +   +D+ H     P ++KP   GSSLG+      + +   L    ++   D  ++E++
Sbjct: 130 QDLEELDAVHGSFGFPVIVKPRGEGSSLGVTKAGSLEELKSALAL--AFEFDDAAIVERF 187

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           V G E+  G++    L   EI VPK   Y YE KY+   + + +PA++P   Y+ V  LA
Sbjct: 188 VAGTEVNVGILDGKVLGAIEI-VPKKGLYDYEAKYTPGMTEYHMPARLPPTRYRGVLNLA 246

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A QA+GC G  R D L      + + LE+N  PGMT  S+ P++A  AGY F +L   
Sbjct: 247 ERAAQALGCTGAVRVDLLVTGGENE-YVLEVNTLPGMTQTSLLPKIAEAAGYEFGDLCEA 305

Query: 292 MVEDA 296
           ++  A
Sbjct: 306 ILASA 310


>gi|312898959|ref|ZP_07758347.1| D-ala D-ala ligase [Megasphaera micronuciformis F0359]
 gi|310620121|gb|EFQ03693.1| D-ala D-ala ligase [Megasphaera micronuciformis F0359]
          Length = 312

 Score =  319 bits (818), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 104/307 (33%), Positives = 167/307 (54%), Gaps = 11/307 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-VDRSVGLVLAHLKPDLAFNVLH 59
           +AV++GG S+E  VS +SGK  A+AL   G+     + V       L   + D+ FN LH
Sbjct: 9   IAVIVGGPSTEAAVSRNSGKNVAAALRAKGYDPIITELVPEEWARTLKEGQFDIVFNALH 68

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL------V 113
           G +GEDG++Q   E++ IPYT  G++ASA+ M+K+ SK      G+   P         V
Sbjct: 69  GRYGEDGVLQGTCEMMNIPYTGPGVMASAVGMNKVVSKSAFVGAGISTAPFRYYFEEQGV 128

Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
           +    +   + S P VIK    GSS+G ++++K   +   L  S ++ +G  ++ E ++ 
Sbjct: 129 DSIAEEILQVFSLPVVIKSAAQGSSIGTVIVRKKDDLKSAL--SEAFAYGKSIVAEAFLS 186

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           G E T  VM + +  V EI + K+  Y YE KY+   S H+ PA+IP ++ KE+Q L+  
Sbjct: 187 GREFTVAVMDELAFPVIEI-ISKTGRYDYESKYTPGLSEHICPAQIPPELTKELQDLSLA 245

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
             +   C+G++R D + D  + K + LEIN  PGMT  S+ P+ +   G  F +L   ++
Sbjct: 246 VFRLFHCKGVARVDLMTDE-NGKAYVLEINTVPGMTETSLVPDASRAMGMPFEDLCERIL 304

Query: 294 EDASCLR 300
           E+AS  +
Sbjct: 305 EEASTGK 311


>gi|83949547|ref|ZP_00958280.1| D-alanine--D-alanine ligase [Roseovarius nubinhibens ISM]
 gi|83837446|gb|EAP76742.1| D-alanine--D-alanine ligase [Roseovarius nubinhibens ISM]
          Length = 271

 Score =  319 bits (818), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 122/276 (44%), Positives = 169/276 (61%), Gaps = 8/276 (2%)

Query: 27  EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
            D GF+V ++D    +   L  +KPD+ FN LHG +GEDG VQ +LE L IPY+HSG+LA
Sbjct: 2   RDEGFEVVEVDAGPDLVSRLTEIKPDVVFNALHGRWGEDGCVQGLLEWLRIPYSHSGVLA 61

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           SAL+MDK +SK V    G+PV  S+L  R  + ++H+++PPYV+KP   GSS+G+ ++ +
Sbjct: 62  SALAMDKQKSKDVYRRAGLPVVESVLAPRDEVRARHVMAPPYVVKPNNEGSSVGVYIVHE 121

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
             + P  L      +  + +++E Y  G ELT  V+GD +L VT+I      +Y Y  KY
Sbjct: 122 AANAPPQLSD----DMPETVMVETYAPGRELTTSVLGDRALGVTDIIT--EGWYDYHAKY 175

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR--KVFWLEINV 264
           S   S H  PA +P +I +     A  AH A+GCRG+SR+DF +D       +  LE N 
Sbjct: 176 SVGGSRHEFPANLPKEITEACLDYAQRAHAALGCRGLSRTDFRWDEARGVDGLIVLETNT 235

Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           QPGMTP S+ PE AA  G SF +L  W+VEDASC R
Sbjct: 236 QPGMTPTSLSPEQAAGIGMSFGQLCRWIVEDASCDR 271


>gi|322614661|gb|EFY11590.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315996572]
 gi|322620180|gb|EFY17052.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-1]
 gi|322623474|gb|EFY20313.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-3]
 gi|322629228|gb|EFY26007.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-4]
 gi|322631948|gb|EFY28702.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-1]
 gi|322637314|gb|EFY34016.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-2]
 gi|322642000|gb|EFY38610.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 531954]
 gi|322646237|gb|EFY42751.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Montevideo str. NC_MB110209-0054]
 gi|322652496|gb|EFY48850.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Montevideo str. OH_2009072675]
 gi|322653341|gb|EFY49674.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Montevideo str. CASC_09SCPH15965]
 gi|322660510|gb|EFY56746.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 19N]
 gi|322664662|gb|EFY60855.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 81038-01]
 gi|322669285|gb|EFY65435.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Montevideo str. MD_MDA09249507]
 gi|322670831|gb|EFY66964.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 414877]
 gi|322678931|gb|EFY74986.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 366867]
 gi|322681959|gb|EFY77984.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 413180]
 gi|322685212|gb|EFY81209.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 446600]
 gi|323194440|gb|EFZ79635.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609458-1]
 gi|323197024|gb|EFZ82166.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556150-1]
 gi|323203349|gb|EFZ88374.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609460]
 gi|323206906|gb|EFZ91859.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 507440-20]
 gi|323210324|gb|EFZ95216.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556152]
 gi|323214566|gb|EFZ99317.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB101509-0077]
 gi|323223123|gb|EGA07466.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB102109-0047]
 gi|323223963|gb|EGA08257.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB110209-0055]
 gi|323230110|gb|EGA14230.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB111609-0052]
 gi|323233848|gb|EGA17937.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009083312]
 gi|323238458|gb|EGA22516.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009085258]
 gi|323244146|gb|EGA28155.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315731156]
 gi|323246306|gb|EGA30289.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2009159199]
 gi|323251932|gb|EGA35795.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008282]
 gi|323257929|gb|EGA41608.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008283]
 gi|323261058|gb|EGA44650.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008284]
 gi|323265012|gb|EGA48511.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008285]
 gi|323272575|gb|EGA55982.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008287]
          Length = 364

 Score =  319 bits (818), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 85/348 (24%), Positives = 164/348 (47%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50
           + ++ GG S+E EVSL S K    A++   F V  + +D++    +   +          
Sbjct: 6   VGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGIDKAGQWHVNDAENYLQNADDPA 65

Query: 51  ---------------------------------PDLAFNVLHGNFGEDGLVQAILELLEI 77
                                             D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  HIALRPSAISLAQVPGKHQHQLINAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR------FTMDSQHLISPPYVIK 131
           P+  S +L+SA  MDK  +K+++   G+ +   I + R         + +  +  P  +K
Sbjct: 126 PFVGSDVLSSAACMDKDVAKRLLRDAGLNIASFITLTRTNRHAFSFAEVESRLGLPLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  +  +      +  +  ++H  ++++EQ + G E+ C V+G+ +   + 
Sbjct: 186 PANQGSSVGVSKVANEAQYQQAVALAFEFDH--KVVVEQGIKGREIECAVLGNDNPQAST 243

Query: 192 IA--VPKSDFYSYELKYSSLN-STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               V  S+FY+Y+ KY   N +  V+PA+IP ++  +++ +A  A+Q +GC G++R D 
Sbjct: 244 CGEIVLNSEFYAYDTKYIDDNGAQVVVPAQIPSEVNDKIRAIAIQAYQTLGCAGMARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                  +V   EIN  PG T +S++P++   +G  + +L+  ++E A
Sbjct: 304 FLTA-DNEVVINEINTLPGFTNISMYPKLWQASGLGYTDLISRLIELA 350


>gi|312795063|ref|YP_004027985.1| D-alanine--D-alanine ligase [Burkholderia rhizoxinica HKI 454]
 gi|312166838|emb|CBW73841.1| D-alanine--D-alanine ligase (EC 6.3.2.4) [Burkholderia rhizoxinica
           HKI 454]
          Length = 315

 Score =  319 bits (818), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 99/300 (33%), Positives = 148/300 (49%), Gaps = 11/300 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG SSER+VSL SG+     L DAG      D        L       AF  LHG
Sbjct: 14  VAVLYGGESSERDVSLVSGRLACQGLRDAGVDAYLFDPKERPLSALKDEGFARAFIALHG 73

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GE+G +Q  L+   I YT  G+L SAL MDK R+K +    G+P  P   V R     
Sbjct: 74  GYGENGQIQGALDFYGIRYTGPGVLGSALGMDKFRTKLIWQQLGIPTPPFDTVLRGEDYD 133

Query: 121 Q------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD- 173
                    +  P  +KP   GSS+ +  +K   ++P  L Q++   H   +L+E+ +D 
Sbjct: 134 MRAQQIVAKLGLPLFVKPATEGSSVAVFKVKAADNLPHALAQAA--RHDPVVLVEKSIDG 191

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           G E T  + G   L +  I VP  +FY Y  KY + ++ +++P  +     + +  LA  
Sbjct: 192 GGEYTACIAGSLPLPLIRI-VPAGEFYDYHAKYVADDTQYLIPCGLSDADEQRLTALARR 250

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           A + + C    R+DF+ D      ++LE+N  PGMT  S+ P+ A   G S+ ELL+ ++
Sbjct: 251 AFEVLACTAWGRADFMLD-SDGNPYFLEVNTSPGMTDHSLPPKAARAVGISYSELLVNVL 309


>gi|311071126|ref|YP_003976049.1| D-alanyl-alanine synthetase A [Bacillus atrophaeus 1942]
 gi|310871643|gb|ADP35118.1| D-alanyl-alanine synthetase A [Bacillus atrophaeus 1942]
          Length = 361

 Score =  319 bits (818), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 89/346 (25%), Positives = 150/346 (43%), Gaps = 53/346 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           + ++ GG S+E  VSL +  A   AL    F +  I +                      
Sbjct: 5   LGLVYGGKSAEHNVSLQTALAVTKALNTEKFDIHPIYITEEGEWQRGARLTEPVSNVKML 64

Query: 47  -------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81
                                     +   D+ F +LHG  GEDG +Q +LELL IPY  
Sbjct: 65  QLEQNGSSFSPAALNKEMFPGDSSKENEAIDVVFPLLHGPNGEDGTIQGLLELLNIPYVG 124

Query: 82  SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKP 132
           +G+LAS+  MDK+  K + +  G+         +              +  +  P  +KP
Sbjct: 125 NGVLASSAGMDKVVMKHLFAQAGLSQAKYAAFLKKDWSRSSEECCEQVEKELGYPCFVKP 184

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--DVT 190
              GSS+GI   +  + +        ++ +  ++++E+ V G E+  GV+G+      V 
Sbjct: 185 ANLGSSVGISKCRSREELEKAF--ELAFQYDRKVVVEEGVIGREIEIGVLGNDEPKCSVV 242

Query: 191 EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
               PK+DFY Y+ KY   ++  ++PA++  D Y ++  +A  A +AI   G+ R+DF  
Sbjct: 243 GEIAPKTDFYDYKAKYEDGDTDLIIPAEVTDDQYAKISDMAIKAFKAIDGSGLVRADFFL 302

Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                +V   E+N  PG TP S+FP +   AG  + +L+  +V+ A
Sbjct: 303 TA-DGEVLINEVNTMPGFTPFSMFPLLWKEAGIEYADLIEQLVDLA 347


>gi|297584141|ref|YP_003699921.1| D-alanine/D-alanine ligase [Bacillus selenitireducens MLS10]
 gi|297142598|gb|ADH99355.1| D-alanine/D-alanine ligase [Bacillus selenitireducens MLS10]
          Length = 359

 Score =  319 bits (818), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 89/341 (26%), Positives = 163/341 (47%), Gaps = 51/341 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           + ++ GG S+E +VSL + KA  +AL+   ++V  I +  +   +               
Sbjct: 5   LGLVYGGKSAEHQVSLQTAKAVINALDFEQYEVHPIYITVTGRWIRGQELTSTIEDASLL 64

Query: 47  -----------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                       D+ F +LHG  GEDG +Q +LE+L+IPY  +G
Sbjct: 65  KFEEGKEISPTSLNQSVFPSYESEERPFDIIFPLLHGPNGEDGTIQGLLEMLDIPYVGNG 124

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLK 134
           +LAS+  MDK+  K + +  G+     +   R   +          + ++  P  +KP  
Sbjct: 125 VLASSAGMDKVMMKNIYAHAGIRQPAYVWYTRPNYEKDTEAACQHVEEVLGFPCFVKPAN 184

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD--VTEI 192
            GSS+GI      Q +       +++++  ++++E+ +DG E+   V+G+   +  V   
Sbjct: 185 LGSSVGISKASNRQELVQAF--QTAFDYDRKVIVEEGIDGREVEIAVLGNDEPECSVVGE 242

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            VPK+DFY Y+ KY   ++  ++PA+I  + Y+ ++ +A  + +A+ C G+ R+DF    
Sbjct: 243 IVPKADFYDYKAKYEDNSTGLIIPAEITDEEYETIKAVAVQSFKALDCSGLVRADFFLTK 302

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
               +   E+N  PG TPVS+FP +   +G S+  L+  M+
Sbjct: 303 -DSTILMNEVNTMPGFTPVSMFPLLWKESGISYPALIEKMI 342


>gi|330964488|gb|EGH64748.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. actinidiae
           str. M302091]
          Length = 363

 Score =  319 bits (818), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 98/354 (27%), Positives = 174/354 (49%), Gaps = 57/354 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR--------SVGLVLAHLKP- 51
           +A++ GG SSE EVSL S +   +A++   + ++ I VD+            +L    P 
Sbjct: 5   VAIVFGGQSSEHEVSLQSARNVINAIDRESYALTLIGVDKLGRWLRFDEADYLLNANDPA 64

Query: 52  ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
                                             D+ F ++HG FGEDG +Q +L +L +
Sbjct: 65  RIKLSGSGKQLSLLPGSAGGQFVEVETGQPLAAIDVVFPLIHGAFGEDGALQGLLRMLAV 124

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT----MDSQHLISPPYVIKPL 133
           P+  + +LASA  MDK  +K+++   G+ V P +++NR        +   +S P  +KP 
Sbjct: 125 PFVGADVLASAACMDKDVTKRLLRDAGIAVAPFMVLNRGESLSFAQAAAQLSLPMFVKPA 184

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI- 192
             GSS+G+  +  +      L     ++H  +LLIEQ + G E+ C V+G+    V+   
Sbjct: 185 NQGSSVGVSKVSDEADFAAALALGFEFDH--KLLIEQGIVGREVECAVLGNDEPQVSVCG 242

Query: 193 -AVPKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
             +   +FY+Y+ KY + +   + +PA++P D+  +V+ +A  A++ +GC G+SR DF  
Sbjct: 243 EVIANDEFYAYDTKYLNGDQARIAIPAELPADLSDQVRDVALQAYKVLGCAGLSRVDFFV 302

Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV----EDASCLR 300
               R++   E+N  PG T +S++P++   +G S+ EL+  ++    E A   R
Sbjct: 303 TEA-REIIINEVNTLPGFTSISMYPKLWQASGLSYAELIHRLIVLALERADEAR 355


>gi|56459549|ref|YP_154830.1| D-alanine--D-alanine ligase [Idiomarina loihiensis L2TR]
 gi|81363518|sp|Q5R0N1|DDL_IDILO RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|56178559|gb|AAV81281.1| D-alanine-D-alanine ligase B [Idiomarina loihiensis L2TR]
          Length = 309

 Score =  319 bits (818), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 102/299 (34%), Positives = 155/299 (51%), Gaps = 10/299 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AV++GG S+ER+VSL SG A    L   G      D        L   K D  F  LHG
Sbjct: 9   VAVMLGGTSAERDVSLKSGMAVLKGLVAKGIDAHAFDPAAHSLQELVEQKFDRVFIALHG 68

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q  L++LE+PYT S +L  AL MDK+R KQ+  S G+P     +V +  ++ 
Sbjct: 69  RGGEDGSMQGALQILEMPYTGSDVLGCALGMDKVRCKQIWHSVGLPTANWRVVTQAEIEQ 128

Query: 121 ------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
                    +    ++KP + GSS+G+ +    +S+ L L  ++ +   D LL+EQ+V+G
Sbjct: 129 VNVEAMLQELGGRVIVKPAREGSSIGMSIADNGRSLALALQHAAEF--DDDLLVEQWVEG 186

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
            E T G++   +L V  +  P  +FY +E KY + ++ +  PA +  D    ++ LA  A
Sbjct: 187 AEYTIGILEGKALPVIRLQTPH-EFYDFEAKYQANDTQYHCPAGLSDDDEASLRTLAERA 245

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
             AIG  G  R D + +    + F LE N  PGMT  S+ P  A  AG  F +L+  ++
Sbjct: 246 FAAIGGSGWGRIDVMRNNA-GEWFLLEANTVPGMTEKSLVPMAAKVAGLQFNDLVERIL 303


>gi|296532817|ref|ZP_06895492.1| D-alanine--D-alanine ligase [Roseomonas cervicalis ATCC 49957]
 gi|296266854|gb|EFH12804.1| D-alanine--D-alanine ligase [Roseomonas cervicalis ATCC 49957]
          Length = 303

 Score =  318 bits (817), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 136/299 (45%), Positives = 197/299 (65%), Gaps = 6/299 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL---KPDLAFNV 57
           +AVL GGIS+EREVSLS+G    +AL  AGF+V+ ++V   +  ++A L   KPD  FN 
Sbjct: 4   VAVLFGGISTEREVSLSTGGQVVTALRQAGFQVTPVEVTSDLAALVAALQAAKPDAVFNA 63

Query: 58  LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117
           LHG FGEDG VQ +L+ L IPYTHSG+ AS+++MDK  +K V ++ G+P+    +V    
Sbjct: 64  LHGRFGEDGCVQGVLDWLGIPYTHSGVRASSVAMDKAAAKAVFAAHGLPLAEHRVVTPAE 123

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
           +++   +  PYV+KP+  GSS+G+ ++K+  +   ++ ++  W  G Q++ E+Y+ G EL
Sbjct: 124 LEAADPLERPYVVKPVSEGSSVGVEILKEGDNRRAEIARN--WRFGPQIMAEEYIAGREL 181

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           T  VMGD  L VTEI      FY Y+ KY++  S H +PA+IP D+ +  +  A  AHQA
Sbjct: 182 TVAVMGDRPLAVTEIGTGHV-FYDYDAKYAAGGSRHTIPAEIPGDVAEAAKAAALRAHQA 240

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +GCRG+SRSDF +D  + K+  LE+N QPG+TP S+ PE AA+ G SF EL  WMV +A
Sbjct: 241 LGCRGVSRSDFRYDDATGKLALLEVNTQPGLTPTSLVPEQAAHCGISFAELCAWMVREA 299


>gi|157827096|ref|YP_001496160.1| D-alanine--D-alanine ligase [Rickettsia bellii OSU 85-389]
 gi|166198502|sp|A8GW96|DDL_RICB8 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|157802400|gb|ABV79123.1| D-alanine--D-alanine ligase [Rickettsia bellii OSU 85-389]
          Length = 321

 Score =  318 bits (817), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 113/297 (38%), Positives = 186/297 (62%), Gaps = 3/297 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +A++ GG+S+EREVSL S +    AL +AG+KV+ ID+   + + L  +KPD+ FN LHG
Sbjct: 25  IALVAGGMSAEREVSLISAEGVGKALIEAGYKVTFIDMGADIAVKLHEIKPDIVFNCLHG 84

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG +  +L ++ IPYTHSG+LAS+L+ DK+ S+    +  + +  SI++++     
Sbjct: 85  TYGEDGCLPGLLNIMRIPYTHSGVLASSLAFDKVHSRSWFLTNNINMAESIVISKGDNIK 144

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  PYVIKP   GSS+G+ VI ++         +  + +GD+++IE+Y+ G EL   
Sbjct: 145 TDPIKRPYVIKPFTQGSSIGVEVIFEEDDFNFA---NYDFPYGDEVIIEKYIKGRELQVA 201

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           ++   +L   EI + K+ FY YE KY+   + H+ PA +P DIY ++ + +   +  + C
Sbjct: 202 ILNGKALGALEIKLLKNRFYDYETKYTEGFAEHLCPAPLPTDIYDKLLKESEKIYNTMNC 261

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           +G +R++F+ +  + K++ LEIN  PGMTP+SI PE+AAY G  F  L+  +++ AS
Sbjct: 262 KGAARAEFILEDGTNKLYALEINTHPGMTPLSIVPEIAAYHGIDFVNLIEEILKTAS 318


>gi|283784195|ref|YP_003364060.1| D-alanine:D-alanine ligase A [Citrobacter rodentium ICC168]
 gi|282947649|emb|CBG87204.1| D-alanine:D-alanine ligase A [Citrobacter rodentium ICC168]
          Length = 364

 Score =  318 bits (817), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 90/348 (25%), Positives = 162/348 (46%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP- 51
           + ++ GG S+E EVSL S K    A++   F+V  + +D+            +L    P 
Sbjct: 6   VGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFEVVLLGIDKQGQWHVSDAANYLLNADDPA 65

Query: 52  ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
                                             D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  HIALRPSATRLAQVPGQHEHQLIDARTATPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLISPPYVIK 131
           P+  S +L SA  MDK  +K+++   G+ + P + ++R         D +  +  P  +K
Sbjct: 126 PFVGSDVLGSAACMDKDVTKRLLRDTGLNIAPFVTLSRANRHTFSFADIKARLGLPLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  +  +      +  +  ++H  ++++EQ + G E+ C V+G+     + 
Sbjct: 186 PANQGSSVGVSKVTNEAQYAQAVALAFEFDH--KVVVEQGIVGREIECAVLGNDRPQAST 243

Query: 192 IA--VPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               V  SDFY+Y+ KY   N    V+PA I   I  +++ +A  A+Q +GC G++R D 
Sbjct: 244 CGEIVLNSDFYAYDTKYIDDNGAKVVVPATIDPQINDKIRDIAIQAYQTLGCAGMARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                  +V   EIN  PG T +S++P++   +G S+ +L+  ++E A
Sbjct: 304 FLTA-ENEVVINEINTLPGFTNISMYPKLWQASGLSYTDLISRLIELA 350


>gi|157825461|ref|YP_001493181.1| D-alanine--D-alanine ligase [Rickettsia akari str. Hartford]
 gi|190359211|sp|A8GMP8|DDL_RICAH RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|157799419|gb|ABV74673.1| D-alanine--D-alanine ligase [Rickettsia akari str. Hartford]
          Length = 320

 Score =  318 bits (817), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 111/297 (37%), Positives = 184/297 (61%), Gaps = 3/297 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +A++ GG+S+EREVSL S +    AL   G+KV+ ID+   + + L  +KPD+ FN LHG
Sbjct: 24  IALVAGGMSAEREVSLVSSEGVQQALIALGYKVTFIDMGADIAVKLQEIKPDIVFNCLHG 83

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG +  +L ++ IPYTHSG+L+SAL+ +K+ S     +  +    SI+V++    +
Sbjct: 84  TYGEDGCLPGLLNIMRIPYTHSGVLSSALAFNKIHSSSWFFANSINTAESIVVSKSYNIN 143

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  PYVIKPL  GSS+G+ VI ++            + +GDQ++IE+Y+ G E    
Sbjct: 144 TDPMKRPYVIKPLTQGSSIGVEVIFEEDDFNFA---DYDFPYGDQVVIERYIKGREFQVA 200

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V+   +L   EI + K+ FY YE KY+   + H+ PA +  ++Y+++   +   ++ + C
Sbjct: 201 VLNSKALGALEIKLIKNRFYDYETKYTEGFAEHLCPAPLHANLYEKLLIESEKIYKTMNC 260

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           +G +R++F+ +  + K++ LEIN  PGMTP+SI PE+AAYAG +F  L+  +++ AS
Sbjct: 261 KGPARAEFILEEQTNKLYALEINTHPGMTPLSIVPEIAAYAGINFTNLIAEIIKTAS 317


>gi|94986220|ref|YP_605584.1| D-alanine--D-alanine ligase [Deinococcus geothermalis DSM 11300]
 gi|166198483|sp|Q1IWG9|DDL_DEIGD RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|94556501|gb|ABF46415.1| D-alanine--D-alanine ligase [Deinococcus geothermalis DSM 11300]
          Length = 339

 Score =  318 bits (817), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 99/337 (29%), Positives = 163/337 (48%), Gaps = 39/337 (11%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------------------- 38
           + +L GG S E EVSL S ++  +AL    F V+ + +                      
Sbjct: 5   ILLLAGGQSEEHEVSLRSARSVLAALPRDQFDVTPVVISPQGRWLPPTDTQRALETGEAV 64

Query: 39  ---DRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
              D  +    +    D  F +LHG  GEDG +Q +L L  IP+  SG+L SA+SMDK+ 
Sbjct: 65  RGGDLVLHRAASAEGYDAVFPLLHGPMGEDGTIQGLLTLAGIPFVGSGVLGSAVSMDKVM 124

Query: 96  SKQVVSSCGVPVCPSILVNRFTMDS--------QHLISPPYVIKPLKGGSSLGIIVIKKD 147
           +KQV++S G+P     L  R                +  P  +KP   GSS+GI  +   
Sbjct: 125 TKQVLASVGMPQVAWRLAVRREWQERPQEVRARAGELGYPLFVKPANLGSSVGISKVSGP 184

Query: 148 QSIPLDLLQSSSWNHGDQLLIEQYV--DGIELTCGVMGDASLDVTEIAVP--KSDFYSYE 203
             +   L    +++ G ++++E        EL  G++G+ +   + +     ++DFY YE
Sbjct: 185 GELERALDL--AFSLGRRVILEAMTAHKPRELEVGILGNDAPIASPVGELRFEADFYDYE 242

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            KY+   +T  +PA +P +I + V+ LA  A + + C G++R DF +   + ++F  E+N
Sbjct: 243 TKYTEGRATMHIPAPLPPEIAERVRMLALTAFRTLDCAGLARVDFFYVEQTGELFLNEVN 302

Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
             PG T  S++P++   AG S+ EL+  +VE A   R
Sbjct: 303 TMPGFTTTSMYPKLFEAAGLSYSELVTRLVELALERR 339


>gi|154509346|ref|ZP_02044988.1| hypothetical protein ACTODO_01874 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798980|gb|EDN81400.1| hypothetical protein ACTODO_01874 [Actinomyces odontolyticus ATCC
           17982]
          Length = 378

 Score =  318 bits (817), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 96/363 (26%), Positives = 164/363 (45%), Gaps = 70/363 (19%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQI-------------------------- 36
           ++ GG SSE E+S S+     +A++   + V  +                          
Sbjct: 11  IVFGGRSSEHEISCSTAAGILTAIDRTKWDVIPLGITRDGQWVRVADDPSALEFKDGKGQ 70

Query: 37  -------------------------DVDRSVGLVL---AHLKPDLAFNVLHGNFGEDGLV 68
                                    D D     V+        D+ F +LHG +GEDG +
Sbjct: 71  SVTAGSTRVALTPGEGNLVELTYEGDPDSPDSRVIGVEDLGHVDIVFPLLHGPYGEDGTI 130

Query: 69  QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ------- 121
           Q + E+  + Y   G+ +SA+SMDK  +K V+++ G+ V    LV     D+        
Sbjct: 131 QGLFEMAGVRYVGCGVTSSAVSMDKHLTKTVLAAAGIDVGQWELVTARQWDADSTACMDR 190

Query: 122 -HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P  +KP + GSS+GI  +   + +P+ + +++  NH  ++++E  + G E+ CG
Sbjct: 191 IERLGFPVFVKPCRAGSSVGISRVTCREDLPVAIKEAA--NHDPRIIVEASISGREVECG 248

Query: 181 VMGD------ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
           V+G        +  + EI VP+ +FY YE KY         PA +  +    ++  A+ A
Sbjct: 249 VLGSRSDWRSGTAPLGEIVVPEGEFYDYEHKYVDDVVGLSCPADVAPEYADRIRETAWRA 308

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             A+ C G++R DF  D  S  V   E+N  PG TP+S++P+M A AG S+ +LL  ++ 
Sbjct: 309 FDALECEGLARVDFFLDEASDTVIINEVNTMPGFTPISMYPQMWAAAGLSYPDLLTELLT 368

Query: 295 DAS 297
           +A+
Sbjct: 369 EAA 371


>gi|304406373|ref|ZP_07388029.1| D-alanine/D-alanine ligase [Paenibacillus curdlanolyticus YK9]
 gi|304344431|gb|EFM10269.1| D-alanine/D-alanine ligase [Paenibacillus curdlanolyticus YK9]
          Length = 377

 Score =  318 bits (816), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 99/355 (27%), Positives = 157/355 (44%), Gaps = 61/355 (17%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           + ++ GG S E EVSL +  A     + + ++V    +        A +           
Sbjct: 7   VGLIYGGKSGEHEVSLRTALAVMGEFDFSRYEVKPFYITTDGQWRTADVLLAPPADVAAL 66

Query: 50  -------------------------------------KPDLAFNVLHGNFGEDGLVQAIL 72
                                                  D+ F +LHG FGEDG +Q +L
Sbjct: 67  RLGGAEQADAAAIGSGGALAPVFQGLQAGSASHGGNGAVDVIFPLLHGTFGEDGTIQGLL 126

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL--------- 123
           E+  IPY  +G+LASA+ MDK+  K+V +  G+P C     NR   D +           
Sbjct: 127 EMANIPYVGAGVLASAVGMDKVMMKKVFAHEGLPQCMFRYFNRTQWDKETDYYVTEIEVS 186

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           +  P  IKP   GSS+GI   K  + +   +  + ++ +  ++++E++VD  E+   V+G
Sbjct: 187 LGYPCFIKPANLGSSVGISKAKNREELIEAI--NYAFRYDRKVIVEEFVDAREIEVSVLG 244

Query: 184 DASLDVTEIAV--PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241
           +     +      P +DFY Y+ KY    S   +PA IP    + V+ +A  A+QAI   
Sbjct: 245 NDEPKASVPGEIRPSNDFYDYKAKYIDGTSVMEIPANIPALTSEAVREMAIRAYQAIDGS 304

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           G+SR DF       ++F  E+N  PG TP S++P M    G  +RELL  ++E A
Sbjct: 305 GLSRVDFFMRKSDGELFINEVNTMPGFTPFSMYPLMWQETGLPYRELLDTLIELA 359


>gi|238759710|ref|ZP_04620869.1| D-alanine--D-alanine ligase [Yersinia aldovae ATCC 35236]
 gi|238702036|gb|EEP94594.1| D-alanine--D-alanine ligase [Yersinia aldovae ATCC 35236]
          Length = 361

 Score =  318 bits (816), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 91/348 (26%), Positives = 159/348 (45%), Gaps = 55/348 (15%)

Query: 4   LMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP---- 51
           + GG S+E EVSL S K    A++   F V+ + +D+            +L    P    
Sbjct: 2   IFGGKSAEHEVSLQSAKNIVEAIDKEKFDVTLLGIDKQGQWHVNDVSNYLLNEENPALIS 61

Query: 52  -------------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYT 80
                                          D+ F ++HG  GEDG +Q +L ++ IP+ 
Sbjct: 62  LNHSNKNVALIPGQQRQQLIAADNGSALAQLDVIFPIVHGTLGEDGSLQGLLRMVNIPFV 121

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVIKPLK 134
            +G++ SA+SMDK  +K+++   G+ V P I + R   +          +  P  IKP  
Sbjct: 122 GAGVVGSAVSMDKDMTKRLLRDAGLNVAPFITLTRTNKNKYRFEAITAKLGLPLFIKPAN 181

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI-- 192
            GSS+G+  ++ +      +  +  ++H  ++L+E  + G EL C V+G+     +    
Sbjct: 182 QGSSVGVSKVRNEDEYHQAIALAFDFDH--KVLVESAIVGRELECAVLGNDDPQASVCGE 239

Query: 193 AVPKSDFYSYELKYSSL-NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
            V   +FYSYE KY +   +  V+PA I       ++ +A  A +A+ C G++R D    
Sbjct: 240 VVISDEFYSYETKYINETGAQVVIPAVIDNAASLRIRTVALEAFRALECLGMARVDVFLT 299

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
           P   +V   E+N  PG T +S++P++    G S+ +L+  ++E A   
Sbjct: 300 P-DNEVIVNEVNTLPGFTNISMYPKLWRATGVSYTQLITTLIELALAR 346


>gi|333008568|gb|EGK28036.1| D-alanine--D-alanine ligase [Shigella flexneri VA-6]
          Length = 364

 Score =  318 bits (816), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 90/348 (25%), Positives = 166/348 (47%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP- 51
           + ++ GG S+E EVSL S K    A++ + F V  + +D+            +L    P 
Sbjct: 6   VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPA 65

Query: 52  ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
                                             D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  HIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLISPPYVIK 131
           P+  S +LASA  MDK  +K+++   G+ + P I + R         + +  +  P  +K
Sbjct: 126 PFVGSDVLASATCMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  +  ++   + +  +  ++H  ++++EQ + G E+ C V+G+ +   + 
Sbjct: 186 PANQGSSVGVSKVTSEEQYAIAVDLAFEFDH--KVIVEQGIKGREIECAVLGNDNPQAST 243

Query: 192 IA--VPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               V  SDFY+Y+ KY     +  V+PA I  +I  +++ +A  A+Q +GC G++R D 
Sbjct: 244 CGELVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              P   +V   EIN  PG T +S++P++   +G  + +L+  ++E A
Sbjct: 304 FLTP-ENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350


>gi|167464092|ref|ZP_02329181.1| Ddl [Paenibacillus larvae subsp. larvae BRL-230010]
 gi|322383284|ref|ZP_08057084.1| D-alanyl-alanine synthetase A-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
 gi|321152404|gb|EFX45203.1| D-alanyl-alanine synthetase A-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
          Length = 373

 Score =  318 bits (816), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 92/353 (26%), Positives = 153/353 (43%), Gaps = 59/353 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           + ++ GG S E EVSL +  A   +++ + + ++   + +                    
Sbjct: 7   IGLIYGGKSGEHEVSLQTAFAVLQSIDFSKYDITPFYITKKGDWKSGPALTAPVSSKEML 66

Query: 46  -----------------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLE 76
                                              D+   +LHG FGEDG +Q + E+  
Sbjct: 67  MFGDREPAALDVFGGLQKREVVISSAIESQPETSVDVVLPLLHGTFGEDGTIQGLFEMAN 126

Query: 77  IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---------ISPP 127
           IPY  +G+LASA+ MDK+  K+V +   +P C      R                 I  P
Sbjct: 127 IPYAGAGVLASAVGMDKVIMKKVFAQEDLPQCVFRHFTRSQWQKDQPFFLMGLEISIGYP 186

Query: 128 YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL 187
             IKP   GSS+GI   +    +   +    ++ +  +++IE++V+  E+   V+G+   
Sbjct: 187 CFIKPANLGSSVGISKARNRDELIKAV--EEAFKYDRKVIIEEFVEAREIEVAVLGNEEP 244

Query: 188 DVTE----IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           +V+     I+   SDFY Y+ KY   NS  V+PA IP +   ++Q LA  A +AI   G+
Sbjct: 245 EVSVPGEIISSKNSDFYDYKAKYQDGNSIMVIPADIPEETAAQIQELAIRAFKAIDGSGL 304

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           SR DF        +   EIN  PG TP S++P +   +G  + +LL  +++ A
Sbjct: 305 SRVDFFMRNSDGHILINEINTMPGFTPFSMYPLLWKESGKPYAQLLDELIDLA 357


>gi|320105501|ref|YP_004181091.1| D-alanine/D-alanine ligase [Terriglobus saanensis SP1PR4]
 gi|319924022|gb|ADV81097.1| D-alanine/D-alanine ligase [Terriglobus saanensis SP1PR4]
          Length = 375

 Score =  318 bits (816), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 96/348 (27%), Positives = 166/348 (47%), Gaps = 57/348 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           + +L GG S E EVSL S  +   A++   + V  I +++    +               
Sbjct: 7   VGILFGGRSGEHEVSLRSAASILDAIDRKKYDVVPIGINKQGKWLNGPDAQNLLGGETVK 66

Query: 46  ------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87
                                 K D+ F VLHG FGEDG +Q + EL ++ Y  SG+L S
Sbjct: 67  QLAATAETGLSIHAAAAGTETSKLDVVFPVLHGTFGEDGTIQGLFELADVAYVGSGVLGS 126

Query: 88  ALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSS 138
           A  MDK   K++ ++  +P+   + + R    +         +  +  P  +KP   GSS
Sbjct: 127 AAGMDKDAMKRMFAASKLPMVKHVTLLRSEWAASKRKCTTQIEAALKYPLFVKPANLGSS 186

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-----IELTCGVMGDASLDVTEIA 193
           +GI  +     +P  + +++ ++   +++IEQ V G      EL   V+G+ + + + + 
Sbjct: 187 VGISKVHDRSELPKAMDEAARFDR--KIVIEQGVGGKRGKARELEVAVLGNDTPEASVVG 244

Query: 194 --VPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
             VP  +FY Y  KY + +++   +PAKI     K+++ +A  A +A  C G++R DFL 
Sbjct: 245 EIVPDREFYDYASKYDATSTSEPQIPAKITKAEAKQIREMAIRAFKACDCSGLARVDFLM 304

Query: 251 DPLS-----RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           DP S      K++  EIN  PG T +S++P++    G S+REL+  ++
Sbjct: 305 DPPSATGKPAKIYLNEINTMPGFTSISMYPKLWEATGVSYRELIDRLI 352


>gi|256821916|ref|YP_003145879.1| D-alanine/D-alanine ligase [Kangiella koreensis DSM 16069]
 gi|256795455|gb|ACV26111.1| D-alanine/D-alanine ligase [Kangiella koreensis DSM 16069]
          Length = 312

 Score =  318 bits (816), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 96/306 (31%), Positives = 167/306 (54%), Gaps = 9/306 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VL GG S+E+E+SL SGKA  +AL + G     ID +      +     D  +N LHG
Sbjct: 9   VVVLYGGNSAEKEISLRSGKAVYNALLNVGIDAVLIDPEAEGLAAIQASNCDRVWNALHG 68

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN------ 114
             GEDG++QA L+LL +PYT SG++ASA++MDK+R+K +  +   PV    ++N      
Sbjct: 69  RGGEDGVIQAHLQLLGLPYTGSGVMASAIAMDKLRTKLIWQAMSYPVAKHRMLNTGVLTI 128

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
               D    ++   ++KP++ GSS+G+      +++   +  +    +  ++++EQ++DG
Sbjct: 129 EQAEDVLADMNDCVMVKPIREGSSVGMAKADNAKALVEAVENAK--QYDREVMLEQWIDG 186

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
            E T  ++   +L    +  P + FY ++ KY S ++ +V P+ +  +   E+  L+  A
Sbjct: 187 EEYTVSILNGKALPSIRVKTPNT-FYDFQAKYQSQSTEYVCPSGLNDEDEAELAELSQAA 245

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             A+GC G  R D + +  +     LE+N  PGMT  S+ P+ A  +G SF EL++ ++E
Sbjct: 246 FYALGCEGWGRVDLMRERSTGNWLLLEVNTVPGMTETSLVPKAAKQSGMSFDELVVAVLE 305

Query: 295 DASCLR 300
            +   R
Sbjct: 306 TSFVER 311


>gi|237730347|ref|ZP_04560828.1| D-alanyl-alanine synthetase A [Citrobacter sp. 30_2]
 gi|226905886|gb|EEH91804.1| D-alanyl-alanine synthetase A [Citrobacter sp. 30_2]
          Length = 364

 Score =  318 bits (816), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 89/348 (25%), Positives = 161/348 (46%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLA------------- 47
           + ++ GG S+E EVSL S K    A++   F V  + +D+     ++             
Sbjct: 6   VGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGIDKQGQWHVSDASNYLLNSNDPA 65

Query: 48  --HLKP----------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
              L+P                            D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  HIALRPSETSLAQVPGKQEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLISPPYVIK 131
           P+  S +L SA  MDK  +K+++   G+ + P I + R         + +  +  P  +K
Sbjct: 126 PFVGSDVLGSAACMDKDVTKRLLRDAGLNIAPFITLTRANRNSISFAEVESRLGLPLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  +  +      +  +  ++H  ++++EQ + G E+ C V+G+     + 
Sbjct: 186 PANQGSSVGVSKVTSEAQYDQAVALAFEFDH--KVVVEQGIKGREIECAVLGNDHPQAST 243

Query: 192 IA--VPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               V  SDFY+Y+ KY   N    V+PA I  +I  +++ +A  A+Q +GC G++R D 
Sbjct: 244 CGEIVLNSDFYAYDTKYIDDNGAKVVVPAAIAPEINDKIREIAIQAYQTLGCAGMARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                   V   EIN  PG T +S++P++   +G  + +L+  ++E A
Sbjct: 304 FLTA-ENDVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350


>gi|217967341|ref|YP_002352847.1| D-alanine/D-alanine ligase [Dictyoglomus turgidum DSM 6724]
 gi|217336440|gb|ACK42233.1| D-alanine/D-alanine ligase [Dictyoglomus turgidum DSM 6724]
          Length = 311

 Score =  318 bits (816), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 101/306 (33%), Positives = 185/306 (60%), Gaps = 15/306 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VL+G  SSE+E++L + +   +AL+  G+   +I +D +V   +   K D+A    HG
Sbjct: 3   VGVLIGVKSSEKEIALKTARNIINALKLKGYDYIEIPIDENVVENIKKSKIDVAIISAHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG +Q +LELL IPY  SG+LASAL++DKM +K++ +   +P      +++  +++
Sbjct: 63  KYGEDGTIQGLLELLGIPYVGSGVLASALALDKMMAKKIFTFHQIPTPKWKELSKKEIET 122

Query: 121 QHL---------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
           + L         +  P++IKP   GS++G+ ++ +++ +   +    ++ + + +++E+Y
Sbjct: 123 RDLNEILKDLSYLKKPWIIKPATQGSTIGLSLVNQEEELLKGI--ELAFQYDENIIVEEY 180

Query: 172 VDGIELTCGVMG---DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           + GIE+T G+        L + EI +PK+ FY Y+ KY+   S H++PA++P ++Y++ Q
Sbjct: 181 IKGIEITAGIYDVNKPICLPLIEI-IPKTGFYDYKTKYTPGLSDHIIPARLPKEVYEKAQ 239

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
            L  LAHQA+GCR +SR D + +  +  ++ LE+N  PGMT  S++PE A   G  F +L
Sbjct: 240 GLGILAHQALGCRHLSRVDMIVEENTNNIYVLEVNTIPGMTETSLYPEAAKAFGIEFPDL 299

Query: 289 LLWMVE 294
           +   ++
Sbjct: 300 IDNFIK 305


>gi|296332824|ref|ZP_06875284.1| D-alanyl-alanine synthetase A [Bacillus subtilis subsp. spizizenii
           ATCC 6633]
 gi|305673170|ref|YP_003864842.1| D-alanyl-alanine synthetase A [Bacillus subtilis subsp. spizizenii
           str. W23]
 gi|296150104|gb|EFG90993.1| D-alanyl-alanine synthetase A [Bacillus subtilis subsp. spizizenii
           ATCC 6633]
 gi|305411414|gb|ADM36533.1| D-alanyl-alanine synthetase A [Bacillus subtilis subsp. spizizenii
           str. W23]
          Length = 361

 Score =  318 bits (816), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 89/346 (25%), Positives = 151/346 (43%), Gaps = 53/346 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           + ++ GG S+E  VSL +  A   AL    F +  I +      V               
Sbjct: 5   LGLVYGGKSAEHNVSLQTALAVIKALNTEKFDIHPIYITEKGEWVKGARLTEPVSNVKML 64

Query: 47  -------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81
                                     +   D+ F +LHG  GEDG +Q +LELL IPY  
Sbjct: 65  QFEQGGSAFSPAALNQEMFPQEASQQNEAIDVVFPLLHGPNGEDGTIQGMLELLNIPYVG 124

Query: 82  SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKP 132
           +G+LAS+  MDK+  K + +  G+         +              +  +  P  +KP
Sbjct: 125 NGVLASSAGMDKVVMKHLFAQAGLAQAKYAAFLKKDWTRSPEESCEQVEQELGYPCFVKP 184

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--DVT 190
              GSS+GI   +  + +        ++ +  ++++E+ ++G E+  GV+G+      V 
Sbjct: 185 ANLGSSVGISKCRNREELQKAF--ELAFQYDRKVVVEEGINGREIEIGVLGNDDPKCSVV 242

Query: 191 EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
               PK+DFY Y+ KY   ++  ++PA +  + Y ++  +A  A +AI   G+ R+DF  
Sbjct: 243 GEIAPKTDFYDYKAKYEDGDTDLMIPAHVTDEEYAKISEMAIKAFKAIDGSGLVRADFFL 302

Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                +V   E+N  PG TP S+FP +   AG  + +L+  +VE A
Sbjct: 303 TA-DGEVLINEVNTMPGFTPFSMFPLLWKEAGVEYADLIEQLVELA 347


>gi|218703662|ref|YP_002411181.1| D-alanyl-alanine synthetase A [Escherichia coli UMN026]
 gi|293403498|ref|ZP_06647589.1| ddl [Escherichia coli FVEC1412]
 gi|298379109|ref|ZP_06988990.1| D-alanine-D-alanine ligase A [Escherichia coli FVEC1302]
 gi|300900436|ref|ZP_07118606.1| D-ala D-ala ligase [Escherichia coli MS 198-1]
 gi|331661753|ref|ZP_08362676.1| D-alanine--D-alanine ligase A (D-alanylalanine synthetaseA)
           (D-Ala-D-Ala ligase A) [Escherichia coli TA143]
 gi|218430759|emb|CAR11633.1| D-alanine-D-alanine ligase A [Escherichia coli UMN026]
 gi|291429351|gb|EFF02371.1| ddl [Escherichia coli FVEC1412]
 gi|298280222|gb|EFI21726.1| D-alanine-D-alanine ligase A [Escherichia coli FVEC1302]
 gi|300356082|gb|EFJ71952.1| D-ala D-ala ligase [Escherichia coli MS 198-1]
 gi|331060175|gb|EGI32139.1| D-alanine--D-alanine ligase A (D-alanylalanine synthetaseA)
           (D-Ala-D-Ala ligase A) [Escherichia coli TA143]
          Length = 364

 Score =  318 bits (816), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 90/348 (25%), Positives = 166/348 (47%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP- 51
           + ++ GG S+E EVSL S K    A++ + F V  + +D+            +L    P 
Sbjct: 6   VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPA 65

Query: 52  ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
                                             D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  HIALRPSATSLAQVPGKHEHQLIDTQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLISPPYVIK 131
           P+  S +LASA  MDK  +K+++   G+ + P I + R         + +  +  P  +K
Sbjct: 126 PFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  +  ++   + +  +  ++H  ++++EQ + G E+ C V+G+ +   + 
Sbjct: 186 PANQGSSVGVSKVTSEEQYAIAVDLAFEFDH--KVIVEQGIKGREIECAVLGNDNPQAST 243

Query: 192 IA--VPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               V  SDFY+Y+ KY     +  V+PA I  +I  +++ +A  A+Q +GC G++R D 
Sbjct: 244 CGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              P   +V   EIN  PG T +S++P++   +G  + +L+  ++E A
Sbjct: 304 FLTP-ENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350


>gi|331651307|ref|ZP_08352332.1| D-alanine--D-alanine ligase A (D-alanylalanine synthetaseA)
           (D-Ala-D-Ala ligase A) [Escherichia coli M718]
 gi|331051048|gb|EGI23100.1| D-alanine--D-alanine ligase A (D-alanylalanine synthetaseA)
           (D-Ala-D-Ala ligase A) [Escherichia coli M718]
          Length = 364

 Score =  318 bits (815), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 90/348 (25%), Positives = 166/348 (47%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP- 51
           + ++ GG S+E EVSL S K    A++ + F V  + +D+            +L    P 
Sbjct: 6   VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPA 65

Query: 52  ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
                                             D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  HIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLISPPYVIK 131
           P+  S +LASA  MDK  +K+++   G+ + P I + R         + +  +  P  +K
Sbjct: 126 PFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  +  ++   + +  +  ++H  ++++EQ + G E+ C V+G+ +   + 
Sbjct: 186 PANQGSSVGVSKVTSEEQYAIAVDLAFEFDH--KVIVEQGIKGREIECAVLGNDNPQAST 243

Query: 192 IA--VPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               V  SDFY+Y+ KY     +  V+PA I  +I  +++ +A  A+Q +GC G++R D 
Sbjct: 244 CGEIVLNSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              P   +V   EIN  PG T +S++P++   +G  + +L+  ++E A
Sbjct: 304 FLTP-ENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350


>gi|323965327|gb|EGB60785.1| D-alanine-D-alanine ligase [Escherichia coli M863]
 gi|327254694|gb|EGE66310.1| D-alanine--D-alanine ligase [Escherichia coli STEC_7v]
          Length = 364

 Score =  318 bits (815), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 88/348 (25%), Positives = 164/348 (47%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50
           + ++ GG S+E EVSL S K    A++ + F V  + +D+     ++             
Sbjct: 6   VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDANNYLLNADDPA 65

Query: 51  ---------------------------------PDLAFNVLHGNFGEDGLVQAILELLEI 77
                                             D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  HIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR------FTMDSQHLISPPYVIK 131
           P+  S +LASA  MDK  +K+++   G+ + P I + R         + +  +  P  +K
Sbjct: 126 PFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRTNRQNISFAEVKSKLGLPLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  +  ++   + +  +  ++H  ++++EQ + G E+ C V+G+ +   + 
Sbjct: 186 PANQGSSVGVSKVTSEEEYAIAVDLAFEFDH--KVIVEQGIKGREIECAVLGNDNPQAST 243

Query: 192 IA--VPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               V  SDFY+Y+ KY     +  V+PA I  +I   ++ +A  A+Q +GC G++R D 
Sbjct: 244 CGEIVLTSDFYAYDTKYIDEDGAKVVVPAAITPEINDMIRAIAVQAYQTLGCAGMARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              P   +V   EIN  PG T +S++P++   +G  + +L+  ++E A
Sbjct: 304 FLTP-ENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350


>gi|194336691|ref|YP_002018485.1| D-alanine/D-alanine ligase [Pelodictyon phaeoclathratiforme BU-1]
 gi|229485970|sp|B4SAI2|DDL_PELPB RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|194309168|gb|ACF43868.1| D-alanine/D-alanine ligase [Pelodictyon phaeoclathratiforme BU-1]
          Length = 360

 Score =  318 bits (815), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 102/351 (29%), Positives = 169/351 (48%), Gaps = 57/351 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD--------------------- 39
           +A++ GG S+E E+S+ S K+ A+ +    +KV  + +                      
Sbjct: 6   VALIFGGRSTEHEISIISAKSIAANISAERYKVIPLYITHQGTWLCEGIARDILNLDLSA 65

Query: 40  -----------------------RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLE 76
                                  +   L    +  ++AF  LHG +GEDG +Q  L+   
Sbjct: 66  LLRNSSPEAAAMALDRMVEEAEQKPFNLDFRAIGIEVAFLTLHGTYGEDGRIQGFLDTCN 125

Query: 77  IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPP 127
           IPYT  G+LASAL+MDK  +K  V+  G+ V PSI +      +         +     P
Sbjct: 126 IPYTGCGVLASALTMDKALTKLCVADAGIAVAPSITLLSAEYHADTEKVHSRIEEKFIYP 185

Query: 128 YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL 187
           + +KP   GSS+GI  +   + +P  L  + S     ++++E+ + G E+   V+G+   
Sbjct: 186 FFVKPANLGSSIGISKVHHREQLPAALKSACSL--DSKIVVEKAITGREIEVAVLGNDEP 243

Query: 188 DVTEIAV--PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
           +V+      P SDFY Y  KY   ++   +PA+IP ++  EV+ +A  A++A+GCRG+SR
Sbjct: 244 EVSVCGEIEPGSDFYDYHDKYIHNSAKLFIPARIPDEMQSEVRSIALKAYKALGCRGMSR 303

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            DF  D     +   E+N  PG T +S+FP + A +G+SF EL   +++ A
Sbjct: 304 IDFFVDEKRGTIVLNEVNTIPGFTDISMFPRLMAASGHSFPELAERLLQLA 354


>gi|254246417|ref|ZP_04939738.1| D-alanine-D-alanine ligase [Burkholderia cenocepacia PC184]
 gi|124871193|gb|EAY62909.1| D-alanine-D-alanine ligase [Burkholderia cenocepacia PC184]
          Length = 312

 Score =  318 bits (815), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 101/299 (33%), Positives = 154/299 (51%), Gaps = 10/299 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL+SG+     L DAG      D        L       AFN LHG
Sbjct: 12  VAVLFGGESAEREVSLTSGRLVLQGLRDAGVDAHPFDPAERPLSALKDEGFVRAFNALHG 71

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118
            +GE+G +Q  L+   I YT SG+L SAL +DK R+K V    GVP  P   V R     
Sbjct: 72  GYGENGQIQGALDFYGIRYTGSGVLGSALGLDKFRTKLVWQQTGVPTPPFETVMRGDDLA 131

Query: 119 ----DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
               D    +  P  +KP   GSS+ ++ +K      L    + +  H   +++E+ ++G
Sbjct: 132 ARATDIVTKLGLPLFVKPASEGSSVAVLKVKTA--DALPAALAEAATHDKIVIVEKSIEG 189

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
            E T  + GD  L + +I VP  +FY Y  KY + ++ +++P  +P +   E++R+A  A
Sbjct: 190 GEYTACIAGDLDLPLIKI-VPAGEFYDYHAKYVADDTQYLIPCGLPAEQETELKRIARRA 248

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
              +GC    R+DF+ D      ++LE+N  PGMT  S+ P+ A   G  + EL++ ++
Sbjct: 249 FDVLGCTDWGRADFMLDAAGNA-YFLEVNTAPGMTDHSLPPKAARAVGIGYSELVVKVL 306


>gi|304396878|ref|ZP_07378758.1| D-alanine/D-alanine ligase [Pantoea sp. aB]
 gi|304355674|gb|EFM20041.1| D-alanine/D-alanine ligase [Pantoea sp. aB]
          Length = 365

 Score =  318 bits (815), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 93/348 (26%), Positives = 162/348 (46%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           + ++ GG S+E EVSL S K    A++   F V  + +D+     L              
Sbjct: 6   VGIVFGGKSAEHEVSLQSAKNILEAIDKTRFDVVLLGIDKQGHWRLNDASNFLLNAENPA 65

Query: 50  --------------------------------KPDLAFNVLHGNFGEDGLVQAILELLEI 77
                                           + D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  LIALNHAAEDVALVPGKTQQQIITRHNAHPLSQIDVIFPIVHGTLGEDGSLQGLLRMASL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN---RFTMDSQHLI---SPPYVIK 131
           P+  S +L SA+SMDK  +K+++   G+ V P + V    R  +D + +I     P  IK
Sbjct: 126 PFVGSDVLGSAVSMDKDFTKRLLRDAGLNVAPWLSVTQAQRAHLDPEAVIARFGLPLFIK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  +   +     L  + S++   ++LIEQ + G E+ C V+G+ + + + 
Sbjct: 186 PANQGSSVGVSKVDSIEEFDAALALAFSFDR--KVLIEQGIKGREIECAVLGNDAPEASP 243

Query: 192 I--AVPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               V    FYSY+ KY S   +  V+PA I  +    ++ +A  A  A+ C G++R D 
Sbjct: 244 CGEVVVHDAFYSYDTKYISENGAQTVVPAAIAAETSDAIRDVAIKAFTALECFGMARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                  ++   E+N  PG T +S++P++   AG S+R+L+  +++ A
Sbjct: 304 FLTDA-GEIIVNEVNTLPGFTNISMYPKLWQAAGLSYRDLISRLIDLA 350


>gi|261404734|ref|YP_003240975.1| D-alanine/D-alanine ligase [Paenibacillus sp. Y412MC10]
 gi|261281197|gb|ACX63168.1| D-alanine/D-alanine ligase [Paenibacillus sp. Y412MC10]
          Length = 364

 Score =  318 bits (815), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 94/341 (27%), Positives = 156/341 (45%), Gaps = 49/341 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           + ++ GG S E EVSLS+  A  +A +   +++    + +     +              
Sbjct: 8   VGLVYGGKSGEHEVSLSTAFAVMNAFDFDKYEIVPFYISKQGTWRIGSKMSAPFARQEEL 67

Query: 47  ----------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84
                                  +   D+ F +LHG FGEDG +Q + E+ +IPY  +G+
Sbjct: 68  KLAEGEGTQTALNAVFSRLYGEENQAVDIMFPLLHGTFGEDGTIQGLFEMADIPYVGTGV 127

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKG 135
           LASA  MDK+  K++ +  G+P C     NR   +          +  +  P  +KP   
Sbjct: 128 LASAAGMDKVVMKKLFAQAGLPQCEYCYFNRTQWERSQHEVLKNIEDKLGFPSFVKPANL 187

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--DVTEIA 193
           GSS+GI   K  + +   +  +  +   D++++E++VD  E+   V+G+      V    
Sbjct: 188 GSSVGISKAKNREQLKAAIESALRF--DDKIIVEEFVDAREVEVSVLGNDEPMASVPGEI 245

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
           V  S++Y Y  KY+   S   +PA+I  D    ++ LA  A +AI   GI+R+DF     
Sbjct: 246 VSSSEYYDYAAKYTDGQSQMQIPAEIDPDTADRLRDLAIAAFKAIEGGGITRADFFVRRS 305

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
              +   E+N  PG TP S++P +    G S+RELL  M+E
Sbjct: 306 DGAILINEVNTMPGFTPFSMYPLLWRETGVSYRELLDRMIE 346


>gi|332298509|ref|YP_004440431.1| D-alanine--D-alanine ligase [Treponema brennaborense DSM 12168]
 gi|332181612|gb|AEE17300.1| D-alanine--D-alanine ligase [Treponema brennaborense DSM 12168]
          Length = 373

 Score =  318 bits (815), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 96/356 (26%), Positives = 159/356 (44%), Gaps = 66/356 (18%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           +AV+ GG S E EVSL S  +    +  A   +  I + +S    L +            
Sbjct: 3   IAVIYGGKSGEHEVSLVSAASIVRNINTAKHDIILIGIAKSGKWFLQNETECERVRADAH 62

Query: 49  ------------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIP 78
                                         L  D+ F+VLHG +GEDG +Q +L++  IP
Sbjct: 63  AALTVAEDADALVSIVPGGGTEGLRTKKGTLPVDVVFSVLHGTYGEDGTIQGLLDMTGIP 122

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-------------DSQHLIS 125
           YT     +SAL+MDK ++KQ+     +PV P + + +                 ++    
Sbjct: 123 YTGCSTASSALTMDKEKTKQIWRESRLPVLPHVCLKQRDRVNGNGESLQKLMRQAETEFG 182

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            P  +KP   GSS+G   + K+  +   + ++  W   D++LIE  +D  E+ C V G++
Sbjct: 183 YPLFVKPCGTGSSVGASKVSKETELEAAVAEAFRW--DDKILIEPAIDAREIECSVTGNS 240

Query: 186 -------SLDVTEIAVPKSDFYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQA 237
                  +    EI  P   FY Y+ KY+  N   +  PA +  +    V++ A  A++ 
Sbjct: 241 VSGGEVTAYTPGEIK-PSHTFYDYDAKYTDPNGAKLCIPADLSAEQLDVVRKTAVKAYET 299

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           + C G+SR DF  D  +  ++  EIN  PG T +S+FP+M   AG S+ +L+  ++
Sbjct: 300 LDCSGLSRVDFFIDRKTGNLYLNEINTMPGFTSISMFPKMCEAAGLSYADLVELII 355


>gi|289209358|ref|YP_003461424.1| D-alanine/D-alanine ligase [Thioalkalivibrio sp. K90mix]
 gi|288944989|gb|ADC72688.1| D-alanine/D-alanine ligase [Thioalkalivibrio sp. K90mix]
          Length = 313

 Score =  318 bits (815), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 102/299 (34%), Positives = 153/299 (51%), Gaps = 7/299 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG S ER++SL SG A  +AL   G     +D+ R     +A    D  F  LHG
Sbjct: 12  VAVLMGGWSGERDISLKSGNAVLAALRRQGVDAHAVDLTRETARCMALEGYDRVFIALHG 71

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q  L++  +PYT +G+L SAL MDK+  K++ +   +P  P  L+       
Sbjct: 72  ECGEDGTLQGCLDMGGMPYTGTGVLGSALGMDKLACKRLWAGTNLPSAPYRLLTPGFDPE 131

Query: 121 --QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                +  P ++KP +GGSSLGI  + +   +P      ++     Q+  EQ++ G E T
Sbjct: 132 AVADALGLPLIVKPARGGSSLGITRVDRVADLPAAF--EAARVQPGQVFAEQWITGREFT 189

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQA 237
             V+G+  L V EI    S FY Y  KY + ++ ++  P  +      E+Q LA  A  A
Sbjct: 190 VAVLGNEPLPVIEIRAA-SGFYDYHAKYEADDTGYLCPPPDLSRSAQLELQSLAIAAFAA 248

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +   G  R D +      + F +E+N  PGMT  S+ P+ AA AG  F EL L +++ +
Sbjct: 249 LEGCGWGRVD-ILQDEHGENFLIEVNTIPGMTGHSLVPKAAAQAGIDFDELCLRILDSS 306


>gi|332094526|gb|EGI99572.1| D-alanine--D-alanine ligase [Shigella boydii 5216-82]
          Length = 364

 Score =  318 bits (815), Expect = 8e-85,   Method: Composition-based stats.
 Identities = 90/348 (25%), Positives = 166/348 (47%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP- 51
           + ++ GG S+E EVSL S K    A++ + F V  + +D+            +L    P 
Sbjct: 6   VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPA 65

Query: 52  ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
                                             D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  HIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR------FTMDSQHLISPPYVIK 131
           P+  S +LASA  MDK  +K+++   G+ + P I + R         + +  +  P  +K
Sbjct: 126 PFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRTNRHNISFAEVESKLGLPLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  +  ++   + +  +  ++H  ++++EQ + G E+ C V+G+ +   + 
Sbjct: 186 PANQGSSVGVSKVTSEEQYAIAVDLAFEFDH--KVIVEQGIKGREIECAVLGNDNPQAST 243

Query: 192 IA--VPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               V  SDFY+Y+ KY     +  V+PA I  +I  +++ +A  A+Q +GC G++R D 
Sbjct: 244 CGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              P   +V   EIN  PG T +S++P++   +G  + +L+  ++E A
Sbjct: 304 FLTP-ENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350


>gi|187934805|ref|YP_001887261.1| D-alanine--D-alanine ligase [Clostridium botulinum B str. Eklund
           17B]
 gi|229463743|sp|B2TPY4|DDL_CLOBB RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|187722958|gb|ACD24179.1| D-alanine--D-alanine ligase [Clostridium botulinum B str. Eklund
           17B]
          Length = 301

 Score =  318 bits (815), Expect = 8e-85,   Method: Composition-based stats.
 Identities = 102/299 (34%), Positives = 172/299 (57%), Gaps = 8/299 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGGISSERE+SL SGK+   ++    ++V  I +D    ++      D A   LHG
Sbjct: 3   VGVIMGGISSEREISLKSGKSIVDSINKNKYEVVSIVIDEKEDIINKVKGIDFALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117
            FGEDG VQ++L+ LEIPY+  G L+S++ MDK  SK ++ +  +   P I + R     
Sbjct: 63  QFGEDGTVQSVLQTLEIPYSGCGPLSSSMCMDKDISKCILKAANIRTAPWINLRRNDKIN 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            +    +  P V+KP  GGSS+   +IK+++ I   + ++  W    +++IE+++ G E+
Sbjct: 123 YEKIEGMGYPVVVKPTHGGSSVATFIIKEEKDIKNAVTEAFKW--DSEVIIEKFIKGDEI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC V GD  L V  I  PK++F+ +  KY+   S   +  ++P ++++EV+ +A   ++A
Sbjct: 181 TCPVFGDKMLPVVAIK-PKAEFFDFTAKYADGGSDEFV-TELPKELHEEVEEMALATYKA 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           + C   SR D +     +  + LE+N  PGMTP S+ P+ AA    SF EL+  +++++
Sbjct: 239 LKCEVYSRVDMIVTE-DKVPYILEVNTLPGMTPNSLIPKSAAGVNISFSELIDMIIDES 296


>gi|218688244|ref|YP_002396456.1| D-alanyl-alanine synthetase A [Escherichia coli ED1a]
 gi|218425808|emb|CAR06614.1| D-alanine-D-alanine ligase A [Escherichia coli ED1a]
          Length = 364

 Score =  318 bits (815), Expect = 8e-85,   Method: Composition-based stats.
 Identities = 88/348 (25%), Positives = 165/348 (47%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50
           + ++ GG S+E EVSL S K    A++ + F V  + +D+     ++             
Sbjct: 6   VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDANNYLLNADDPA 65

Query: 51  ---------------------------------PDLAFNVLHGNFGEDGLVQAILELLEI 77
                                             D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  HIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLISPPYVIK 131
           P+  S +LASA  MDK  +K+++   G+ + P I + R         + +  +  P  +K
Sbjct: 126 PFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  +  ++   + +  +  ++H  ++++EQ + G E+ C V+G+ +   + 
Sbjct: 186 PANQGSSVGVSKVTSEEQYAIAVDLAFEFDH--KVIVEQGIKGREIECAVLGNDNPQAST 243

Query: 192 IA--VPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               V  SDFY+Y+ KY     +  V+PA I  +I  +++ +A  A+Q +GC G++R D 
Sbjct: 244 CGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              P   +V   EIN  PG T +S++P++   +G  + +L+  ++E A
Sbjct: 304 FLTP-ENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350


>gi|291085781|ref|ZP_06354046.2| D-alanine--D-alanine ligase A [Citrobacter youngae ATCC 29220]
 gi|291069833|gb|EFE07942.1| D-alanine--D-alanine ligase A [Citrobacter youngae ATCC 29220]
          Length = 375

 Score =  318 bits (815), Expect = 9e-85,   Method: Composition-based stats.
 Identities = 89/348 (25%), Positives = 161/348 (46%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLA------------- 47
           + ++ GG S+E EVSL S K    A++   F V  + +D+     ++             
Sbjct: 17  VGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGIDKQGQWHVSDASNYLLNSDDPA 76

Query: 48  --HLKP----------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
              L+P                            D+ F ++HG  GEDG +Q +L +  +
Sbjct: 77  HIALRPSATSLAQVPGKQEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 136

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLISPPYVIK 131
           P+  S +L SA  MDK  +K+++   G+ + P I + R         + +  +  P  +K
Sbjct: 137 PFVGSDVLGSAACMDKDVTKRLLRDAGLNIAPFITLTRANRNNISFAEVESRLGLPLFVK 196

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  +  +      +  +  ++H  ++++EQ + G E+ C V+G+     + 
Sbjct: 197 PANQGSSVGVSKVTSEAQYNQAVALAFEFDH--KVVVEQGIKGREIECAVLGNDRPQAST 254

Query: 192 IA--VPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               V  SDFY+Y+ KY   N    V+PA I  +I  +++ +A  A+Q +GC G++R D 
Sbjct: 255 CGEIVLNSDFYAYDTKYIDDNGAKVVVPAAIAPEINDKIREIAIQAYQTLGCAGMARVDV 314

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                   V   EIN  PG T +S++P++   +G  + +L+  ++E A
Sbjct: 315 FLTA-ENDVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 361


>gi|159900023|ref|YP_001546270.1| D-alanine--D-alanine ligase [Herpetosiphon aurantiacus ATCC 23779]
 gi|229485958|sp|A9B406|DDL_HERA2 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|159893062|gb|ABX06142.1| D-alanine--D-alanine ligase [Herpetosiphon aurantiacus ATCC 23779]
          Length = 361

 Score =  318 bits (815), Expect = 9e-85,   Method: Composition-based stats.
 Identities = 88/350 (25%), Positives = 157/350 (44%), Gaps = 57/350 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           + ++ GG S E EVSL S +A  +AL+   + V  I + R+ G  L+   P         
Sbjct: 6   VGIVFGGKSGEHEVSLKSARAVMNALDPEKYTVIPIGITRN-GQWLSGGDPLLALEQQAD 64

Query: 52  ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
                                             D+   VLHG FGEDG +Q + E   +
Sbjct: 65  QKMLGRTPQAGVVSETAIVQSAGSLPEQTNVAALDVIIPVLHGPFGEDGTIQGVFEFANL 124

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPY 128
           PY   G+LA+++ MDK   K   ++ G+P  P  LV R    +         +  +  P 
Sbjct: 125 PYVGCGVLAASVGMDKGLMKSAFAAAGLPQVPWQLVLRRDWQTQPEAVYERLEATLHYPM 184

Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL- 187
            +KP   GSS+GI  +     +   + +++   +  ++++EQ ++  E+   ++G+    
Sbjct: 185 FVKPANLGSSVGISKVSNRAELATGMAEAA--GYDRRIVVEQGINAREIEVAILGNDDPK 242

Query: 188 -DVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRS 246
             V    +P +DFY Y  KY    +   +PA++     ++++ +A  A +AI   G++R 
Sbjct: 243 PSVPGEVLPANDFYDYADKYLEGQTQFAIPAELDAATSEQLREMAVTAFKAIDGAGLARV 302

Query: 247 DFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           DF  +  +  ++  EIN  PG T +S +P++    G  + ELL  +++ A
Sbjct: 303 DFFVERETGAIYINEINTFPGFTAMSQYPKLWEATGLGYSELLDRLIDLA 352


>gi|161504434|ref|YP_001571546.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. arizonae
           serovar 62:z4,z23:-- str. RSK2980]
 gi|160865781|gb|ABX22404.1| hypothetical protein SARI_02546 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 370

 Score =  317 bits (814), Expect = 9e-85,   Method: Composition-based stats.
 Identities = 88/348 (25%), Positives = 165/348 (47%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50
           + ++ GG S+E EVSL S K    A++   F V  + +D++    +   +          
Sbjct: 12  VGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGIDKAGQWHVNDAENYLQNADDPA 71

Query: 51  ---------------------------------PDLAFNVLHGNFGEDGLVQAILELLEI 77
                                             D+ F ++HG  GEDG +Q +L +  +
Sbjct: 72  HIALRPSAISLAQVPGKHEQQLINAQNGQPLPTIDVIFPIVHGTLGEDGSLQGMLRVANL 131

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLISPPYVIK 131
           P+  S +L+SA  MDK  +K+++   G+ + P I + R         + +  +  P  +K
Sbjct: 132 PFVGSDVLSSAACMDKDVAKRLLRDAGLNIAPFITLTRANRHAFSFAEMESRLGLPLFVK 191

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  +  +      +  +  ++H  ++++EQ + G E+ C V+G+ S   + 
Sbjct: 192 PANQGSSVGVSKVANEAQYLQAVALAFEFDH--KVVVEQGIKGREIECAVLGNDSPQAST 249

Query: 192 IA--VPKSDFYSYELKYSSLN-STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               V  S+FY+Y+ KY   N +  V+PA+IP  +  +++ +A  A+Q +GC G++R D 
Sbjct: 250 CGEIVLNSEFYAYDTKYIDDNGAQVVVPAQIPSGVNDKIRAIAIQAYQTLGCAGMARVDV 309

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              P   +V   EIN  PG T +S++P++   +G  + +L+  ++E A
Sbjct: 310 FLTP-ENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLISRLIELA 356


>gi|269140712|ref|YP_003297413.1| D-alanylalanine synthetase [Edwardsiella tarda EIB202]
 gi|267986373|gb|ACY86202.1| D-alanylalanine synthetase [Edwardsiella tarda EIB202]
          Length = 390

 Score =  317 bits (814), Expect = 9e-85,   Method: Composition-based stats.
 Identities = 91/348 (26%), Positives = 164/348 (47%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           + ++ GG S E EVSL S K    A++ + F V+ I +D+     L              
Sbjct: 29  VGIVFGGQSCEHEVSLQSAKNIVEAIDQSRFDVTLIGIDKQGYWHLCGGQDYLNHAQDPQ 88

Query: 47  -------------------------AHLKP----DLAFNVLHGNFGEDGLVQAILELLEI 77
                                    A  +P    D+ F ++HG  GEDG +Q +L++L +
Sbjct: 89  HIALNHSERRLAVIPGATQGQLIDSASGEPLPSLDVIFPIVHGTQGEDGCLQGMLKMLNL 148

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVIK 131
           P+  S ++ SA  MDK   K+++   G+P+ P + + R T  +      +  +     +K
Sbjct: 149 PFVGSDVIGSAACMDKEVCKRLLRDAGLPITPFVTLTRATQANYDYETLRSQLGETLFVK 208

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  ++        +  +  ++H  ++++E+ V G E+ C ++G+ +   + 
Sbjct: 209 PANQGSSVGVSKVRNADEYHRAIADALRFDH--KVIVERGVVGREIECAILGNEAAQASV 266

Query: 192 IA--VPKSDFYSYELKYSSL-NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               V  SDFYSY+ KY S   +  V+PA +  +  + V+  A  A QA+ CRG++R D 
Sbjct: 267 CGEIVLHSDFYSYDSKYISAQGAQVVVPAAMAPEASERVRHTALRAFQALECRGLARVDV 326

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                  +V   EIN  PG T +S++P++   +G  ++ L+  ++E A
Sbjct: 327 FLTE-DNEVIINEINTLPGFTNISMYPKLWQASGIGYQALITRLIELA 373


>gi|167551817|ref|ZP_02345570.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|205323388|gb|EDZ11227.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
          Length = 364

 Score =  317 bits (814), Expect = 9e-85,   Method: Composition-based stats.
 Identities = 85/348 (24%), Positives = 164/348 (47%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50
           + ++ GG S+E EVSL S K    A++   F V  + +D++    +   +          
Sbjct: 6   VGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGIDKAGQWHVNDAENYLQNADDPA 65

Query: 51  ---------------------------------PDLAFNVLHGNFGEDGLVQAILELLEI 77
                                             D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  HIALRPSAISLAQVPGKHQHQLINAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR------FTMDSQHLISPPYVIK 131
           P+  S +L+SA  MDK  +K+++   G+ + P I + R         + +  +  P  +K
Sbjct: 126 PFVGSDVLSSAACMDKDVAKRLLRDAGLNIAPFITLTRTNRHAFSFAEVESRLGLPLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  +  +      +  +  ++H  ++++EQ + G E+ C V+G+ +   + 
Sbjct: 186 PANQGSSVGVSKVANEAQYQQAVALAFEFDH--KVVVEQGIKGREIECAVLGNDNPQAST 243

Query: 192 IA--VPKSDFYSYELKYSSLN-STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               V  S+FY+Y+ KY   N +  V+PA+IP ++  +++ +A  A+Q +GC G++R D 
Sbjct: 244 CGEIVLNSEFYAYDTKYIDDNGAQVVVPAQIPSEVNDKIRAIAIQAYQTLGCAGMARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                  +V   EIN  PG T +S++P++   +   + +L+  ++E A
Sbjct: 304 FLTA-DNEVVINEINTLPGFTNISMYPKLWQASRLGYTDLISRLIELA 350


>gi|187731227|ref|YP_001879088.1| D-alanyl-alanine synthetase A [Shigella boydii CDC 3083-94]
 gi|187428219|gb|ACD07493.1| D-alanine--D-alanine ligase A [Shigella boydii CDC 3083-94]
 gi|320174503|gb|EFW49641.1| D-alanine--D-alanine ligase [Shigella dysenteriae CDC 74-1112]
          Length = 364

 Score =  317 bits (814), Expect = 9e-85,   Method: Composition-based stats.
 Identities = 90/348 (25%), Positives = 166/348 (47%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP- 51
           + ++ GG S+E EVSL S K    A++ + F V  + +D+            +L    P 
Sbjct: 6   VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPA 65

Query: 52  ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
                                             D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  HIALRPSATSLAQVPSKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLISPPYVIK 131
           P+  S +LASA  MDK  +K+++   G+ + P I + R         + +  +  P  +K
Sbjct: 126 PFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  +  ++   + +  +  ++H  ++++EQ + G E+ C V+G+ +   + 
Sbjct: 186 PANQGSSVGVSKVTSEEQYAIAVDLAFEFDH--KVIVEQGIKGREIECAVLGNDNPQAST 243

Query: 192 IA--VPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               V  SDFY+Y+ KY     +  V+PA I  +I  +++ +A  A+Q +GC G++R D 
Sbjct: 244 CGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              P   +V   EIN  PG T +S++P++   +G  + +L+  ++E A
Sbjct: 304 FLTP-ENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350


>gi|256020350|ref|ZP_05434215.1| D-alanyl-alanine synthetase A [Shigella sp. D9]
 gi|332281524|ref|ZP_08393937.1| D-alanyl-alanine synthetase A [Shigella sp. D9]
 gi|332103876|gb|EGJ07222.1| D-alanyl-alanine synthetase A [Shigella sp. D9]
          Length = 364

 Score =  317 bits (814), Expect = 9e-85,   Method: Composition-based stats.
 Identities = 90/348 (25%), Positives = 166/348 (47%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP- 51
           + ++ GG S+E EVSL S K    A++ + F V  + +D+            +L    P 
Sbjct: 6   VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPA 65

Query: 52  ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
                                             D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  HIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLISPPYVIK 131
           P+  S +LASA  MDK  +K+++   G+ + P I + R         + +  +  P  +K
Sbjct: 126 PFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRNNISFAEVESKLGLPLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  +  ++   + +  +  ++H  ++++EQ + G E+ C V+G+ +   + 
Sbjct: 186 PANQGSSVGVSKVTSEEQYAIAVDLAFEFDH--KVIVEQGIKGREIECAVLGNDNPQAST 243

Query: 192 IA--VPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               V  SDFY+Y+ KY     +  V+PA I  +I  +++ +A  A+Q +GC G++R D 
Sbjct: 244 CGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              P   +V   EIN  PG T +S++P++   +G  + +L+  ++E A
Sbjct: 304 FLTP-ENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350


>gi|291281284|ref|YP_003498102.1| D-alanine--D-alanine ligase A [Escherichia coli O55:H7 str. CB9615]
 gi|209744410|gb|ACI70512.1| D-alanine-D-alanine ligase A [Escherichia coli]
 gi|290761157|gb|ADD55118.1| D-alanine--D-alanine ligase A [Escherichia coli O55:H7 str. CB9615]
          Length = 364

 Score =  317 bits (814), Expect = 9e-85,   Method: Composition-based stats.
 Identities = 90/348 (25%), Positives = 166/348 (47%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP- 51
           + ++ GG S+E EVSL S K    A++ + F V  + +D+            +L    P 
Sbjct: 6   VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPA 65

Query: 52  ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
                                             D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  HIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLISPPYVIK 131
           P+  S +LASA  MDK  +K+++   G+ + P I + R         + +  +  P  +K
Sbjct: 126 PFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVEAKLGLPLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  +  ++   + +  +  ++H  ++++EQ + G E+ C V+G+ +   + 
Sbjct: 186 PANQGSSVGVSKVTSEEQYAIAVDLAFEFDH--KVIVEQGIKGREIECAVLGNDNPQAST 243

Query: 192 IA--VPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               V  SDFY+Y+ KY     +  V+PA I  +I  +++ +A  A+Q +GC G++R D 
Sbjct: 244 CGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              P   +V   EIN  PG T +S++P++   +G  + +L+  ++E A
Sbjct: 304 FLTP-ENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350


>gi|271499277|ref|YP_003332302.1| D-alanine/D-alanine ligase [Dickeya dadantii Ech586]
 gi|270342832|gb|ACZ75597.1| D-alanine/D-alanine ligase [Dickeya dadantii Ech586]
          Length = 366

 Score =  317 bits (814), Expect = 9e-85,   Method: Composition-based stats.
 Identities = 90/348 (25%), Positives = 160/348 (45%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP- 51
           + V+ GG SSE EVSL S K    A++   F V  + +D+            +L    P 
Sbjct: 6   VGVVFGGKSSEHEVSLQSAKNIVDAIDKTRFDVVLLGIDKQGEWHVNDASNYLLNADNPA 65

Query: 52  ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
                                             D+ F ++HG  GEDG +Q +L +  I
Sbjct: 66  LIALNRSSQNVALIPGQTHHQLIDTASASALSQIDVIFPIVHGTLGEDGSLQGLLRMANI 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ------HLISPPYVIK 131
           P+  S +L SA+SMDK  +K+++   G+ V P + + R              +  P  IK
Sbjct: 126 PFVGSSVLGSAVSMDKDVTKRLLRDAGLQVAPFVTLTRANRARHPYDSVTAELGLPLFIK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  ++        +    ++ +  ++L+E  + G E+ C V+G+     + 
Sbjct: 186 PANQGSSVGVSKVRNQAEFEHAV--ELAFRYDHKVLVESAIVGREIECAVLGNDYPKASV 243

Query: 192 IA--VPKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               V   +FYSY+ KY + +   V +PA +  D+++ ++ +A  A QA+ C+G++R D 
Sbjct: 244 CGEIVLHDEFYSYDTKYINEDGAAVAIPAVMDDDVHQHIRDIALRAFQALECQGMARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              P  ++V   E+N  PG T +S++P++   +G  +  L+  ++E A
Sbjct: 304 FLTP-DQQVVVNEVNTLPGFTNISMYPKLWEASGLDYTSLITQLIELA 350


>gi|320161744|ref|YP_004174969.1| D-alanine--D-alanine ligase [Anaerolinea thermophila UNI-1]
 gi|319995598|dbj|BAJ64369.1| D-alanine--D-alanine ligase [Anaerolinea thermophila UNI-1]
          Length = 369

 Score =  317 bits (814), Expect = 9e-85,   Method: Composition-based stats.
 Identities = 104/351 (29%), Positives = 170/351 (48%), Gaps = 53/351 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD--------RSVGLVLAHLKP- 51
           + V+ GG S E EVSL S ++  + L    ++V+QI +          +V   L   +  
Sbjct: 7   VGVIFGGRSGEHEVSLMSSRSVLNVLSPEKYEVTQIGITLEGMWVTGENVWKALKSGQVK 66

Query: 52  ------------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTH 81
                                         D+ F VLHG FGEDG +Q +LE+ +  Y  
Sbjct: 67  GLSQAVLLPYPGETILYALRNGTLEPVTTLDVIFPVLHGTFGEDGTLQGLLEMADCAYVG 126

Query: 82  SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKP 132
           +G+L SA+ MDK   K V+ + G+PV  S+LV R  ++          + L   P+  KP
Sbjct: 127 AGVLGSAVGMDKGLFKDVMRAHGLPVADSVLVTRKQLEQNLSEVIEQVERLGEYPFFTKP 186

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASL--DV 189
              GSS+GI        +   LL+++   +  ++LIE+ V D  E+   V+G+      V
Sbjct: 187 ANLGSSVGITKCHSRSELYEGLLEAA--RYDRRILIERGVPDAREIEVSVLGNDEPIASV 244

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
               VP  +FYSYE KY    S  ++PA +   + + +++LA  A++AI C G++R DFL
Sbjct: 245 PGEIVPGDEFYSYEAKYLMETSKLLIPAPLSEALSERIRQLAIQAYRAIDCAGMARVDFL 304

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
            +  + + F  EIN  PG T +S++P++   +G S+  L+  ++E A   +
Sbjct: 305 VNRNTGECFINEINTIPGFTAISMYPKLWEASGISYTALIDRLIELALERK 355


>gi|307312242|ref|ZP_07591878.1| D-alanine/D-alanine ligase [Escherichia coli W]
 gi|331666726|ref|ZP_08367600.1| D-alanine--D-alanine ligase A (D-alanylalanine synthetaseA)
           (D-Ala-D-Ala ligase A) [Escherichia coli TA271]
 gi|306907744|gb|EFN38246.1| D-alanine/D-alanine ligase [Escherichia coli W]
 gi|315059660|gb|ADT73987.1| D-alanine-D-alanine ligase A [Escherichia coli W]
 gi|320201621|gb|EFW76197.1| D-alanine--D-alanine ligase [Escherichia coli EC4100B]
 gi|323379775|gb|ADX52043.1| D-alanine/D-alanine ligase [Escherichia coli KO11]
 gi|331065950|gb|EGI37834.1| D-alanine--D-alanine ligase A (D-alanylalanine synthetaseA)
           (D-Ala-D-Ala ligase A) [Escherichia coli TA271]
          Length = 364

 Score =  317 bits (814), Expect = 9e-85,   Method: Composition-based stats.
 Identities = 89/348 (25%), Positives = 166/348 (47%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           + ++ GG S+E EVSL S K    A++ + F V  + +D+     ++             
Sbjct: 6   VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPA 65

Query: 49  -------------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEI 77
                                          L  D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  HIALRPSATSLAQVPGKHEHQLIDAQNGQPLLTVDVIFPIVHGTLGEDGSLQGMLRVANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLISPPYVIK 131
           P+  S +LASA  MDK  +K+++   G+ + P I + R         + +  +  P  +K
Sbjct: 126 PFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  +  ++   + +  +  ++H  ++++EQ + G E+ C V+G+ +   + 
Sbjct: 186 PANQGSSVGVSKVTSEEQYAIAVDLAFEFDH--KVIVEQGIKGREIECAVLGNDNPQAST 243

Query: 192 IA--VPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               V  SDFY+Y+ KY     +  V+PA I  +I  +++ +A  A+Q +GC G++R D 
Sbjct: 244 CGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              P   +V   EIN  PG T +S++P++   +G  + +L+  ++E A
Sbjct: 304 FLTP-ENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350


>gi|78355413|ref|YP_386862.1| D-alanine--D-alanine ligase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|123553397|sp|Q316H9|DDL_DESDG RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|78217818|gb|ABB37167.1| D-alanine--D-alanine ligase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 308

 Score =  317 bits (814), Expect = 9e-85,   Method: Composition-based stats.
 Identities = 105/296 (35%), Positives = 161/296 (54%), Gaps = 5/296 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK-PDLAFNVLH 59
           + ++ GG S ER+VSLS  +   +ALE  G +V+  D  R++  +L   +  D AF  LH
Sbjct: 3   ILLIAGGWSEERDVSLSGARGIHAALERLGHQVTLFDPCRTLAGLLEAAQAHDFAFLNLH 62

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT-M 118
           G  GEDGLVQA+LE   +PY  SG   S L+++K  +K+V    G+P    + +      
Sbjct: 63  GQPGEDGLVQALLETAGVPYQGSGPAGSFLALNKAAAKEVFVRNGLPTPEWVFLPAHPGA 122

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           D +   + P  IK   GGSSL +  +     +   L +   +  G + +IE  V+G+E+T
Sbjct: 123 DWEPPFAFPAFIKSNNGGSSLALHRVSCPGELARALDE--LFTRGGEAIIEPAVEGVEVT 180

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           CGV+GD +L    I    + F+ Y  KY+   +  + PA +P ++  +V+  A  AH+A+
Sbjct: 181 CGVLGDEALPPILIRPLGAGFFDYASKYTPGQAEELCPAPLPGEVTAKVREYALRAHRAL 240

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           G RG SRSDF+  P    +  LE+N  PGMT  S+ P+ AA  G SF  L+  ++E
Sbjct: 241 GLRGYSRSDFILTPA-GALSLLEVNTLPGMTATSLLPQEAAAVGISFDGLIGRLIE 295


>gi|300918244|ref|ZP_07134849.1| D-ala D-ala ligase [Escherichia coli MS 115-1]
 gi|300414587|gb|EFJ97897.1| D-ala D-ala ligase [Escherichia coli MS 115-1]
          Length = 364

 Score =  317 bits (814), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 90/348 (25%), Positives = 166/348 (47%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP- 51
           + ++ GG S+E EVSL S K    A++ + F V  + +D+            +L    P 
Sbjct: 6   VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPA 65

Query: 52  ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
                                             D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  HIALRPSATSLAQVPGKHERQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLISPPYVIK 131
           P+  S +LASA  MDK  +K+++   G+ + P I + R         + +  +  P  +K
Sbjct: 126 PFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  +  ++   + +  +  ++H  ++++EQ + G E+ C V+G+ +   + 
Sbjct: 186 PANQGSSVGVSKVTSEEQYAIAVDLAFEFDH--KVIVEQGIKGREIECAVLGNDNPQAST 243

Query: 192 IA--VPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               V  SDFY+Y+ KY     +  V+PA I  +I  +++ +A  A+Q +GC G++R D 
Sbjct: 244 CGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              P   +V   EIN  PG T +S++P++   +G  + +L+  ++E A
Sbjct: 304 FLTP-ENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350


>gi|312437503|gb|ADQ76574.1| D-alanine-D-alanine ligase [Staphylococcus aureus subsp. aureus
           TCH60]
          Length = 393

 Score =  317 bits (814), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 85/339 (25%), Positives = 151/339 (44%), Gaps = 46/339 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           + ++ GG S+E EVS+ + +   +A++   + V  I +         +            
Sbjct: 43  ICIVFGGKSAEHEVSILTAQNVLNAIDKDKYHVDIIYITNDGDWRKQNNITTEIKSTDEL 102

Query: 49  --------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
                                  D  F +LHG  GEDG +Q + E+L++PY  +G+L++A
Sbjct: 103 HLENGEALEISQLLKESSSGQPYDAVFPLLHGPNGEDGTIQGLFEVLDVPYVGNGVLSAA 162

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSL 139
            SMDK+  KQ+    G+P  P I   R   +             ++ P  +KP   GSS+
Sbjct: 163 SSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYEHNILKLVNDKLNYPVFVKPANLGSSI 222

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKS 197
           GI     +  +   + ++  ++   +L+IEQ V+  E+   V+G+   + T     V   
Sbjct: 223 GISKCSNEAELKEGIKEAFQFDR--KLVIEQGVNAREIEVAVLGNDYPEATWPGEVVKDV 280

Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
            FY Y+ KY        +PA +  D+   ++ +A  A +A  C G+ R+DF       ++
Sbjct: 281 AFYDYKSKYKDGKVQLQIPADLDEDVQLTLRNMALEAFKATDCSGLVRADFFVTE-DNQI 339

Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +  E N  PG T  S++P++    G S+ EL+  ++E A
Sbjct: 340 YINETNAMPGFTAFSMYPKLWENMGLSYPELITKLIELA 378


>gi|15800107|ref|NP_286119.1| D-alanyl-alanine synthetase A [Escherichia coli O157:H7 EDL933]
 gi|15829685|ref|NP_308458.1| D-alanyl-alanine synthetase A [Escherichia coli O157:H7 str. Sakai]
 gi|16128366|ref|NP_414915.1| D-alanine-D-alanine ligase A [Escherichia coli str. K-12 substr.
           MG1655]
 gi|24111677|ref|NP_706187.1| D-alanyl-alanine synthetase A [Shigella flexneri 2a str. 301]
 gi|30061806|ref|NP_835977.1| D-alanyl-alanine synthetase A [Shigella flexneri 2a str. 2457T]
 gi|89107252|ref|AP_001032.1| D-alanine-D-alanine ligase A [Escherichia coli str. K-12 substr.
           W3110]
 gi|157155036|ref|YP_001461557.1| D-alanyl-alanine synthetase A [Escherichia coli E24377A]
 gi|157159898|ref|YP_001457216.1| D-alanyl-alanine synthetase A [Escherichia coli HS]
 gi|168749828|ref|ZP_02774850.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str.
           EC4113]
 gi|168756907|ref|ZP_02781914.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str.
           EC4401]
 gi|168761571|ref|ZP_02786578.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str.
           EC4501]
 gi|168768316|ref|ZP_02793323.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str.
           EC4486]
 gi|168776329|ref|ZP_02801336.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str.
           EC4196]
 gi|168783231|ref|ZP_02808238.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str.
           EC4076]
 gi|168800248|ref|ZP_02825255.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str. EC508]
 gi|170021246|ref|YP_001726200.1| D-alanyl-alanine synthetase A [Escherichia coli ATCC 8739]
 gi|170079968|ref|YP_001729288.1| D-alanine-D-alanine ligase A [Escherichia coli str. K-12 substr.
           DH10B]
 gi|170684315|ref|YP_001742513.1| D-alanyl-alanine synthetase A [Escherichia coli SMS-3-5]
 gi|191166736|ref|ZP_03028563.1| D-alanine--D-alanine ligase A [Escherichia coli B7A]
 gi|193065214|ref|ZP_03046287.1| D-alanine--D-alanine ligase A [Escherichia coli E22]
 gi|193068673|ref|ZP_03049634.1| D-alanine--D-alanine ligase A [Escherichia coli E110019]
 gi|194428839|ref|ZP_03061374.1| D-alanine--D-alanine ligase A [Escherichia coli B171]
 gi|194438869|ref|ZP_03070954.1| D-alanine--D-alanine ligase A [Escherichia coli 101-1]
 gi|195938560|ref|ZP_03083942.1| D-alanyl-alanine synthetase A [Escherichia coli O157:H7 str.
           EC4024]
 gi|208808983|ref|ZP_03251320.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str.
           EC4206]
 gi|208815537|ref|ZP_03256716.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str.
           EC4045]
 gi|208822855|ref|ZP_03263173.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str.
           EC4042]
 gi|209399711|ref|YP_002269017.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str.
           EC4115]
 gi|209917592|ref|YP_002291676.1| D-alanyl-alanine synthetase A [Escherichia coli SE11]
 gi|215485463|ref|YP_002327894.1| D-alanyl-alanine synthetase A [Escherichia coli O127:H6 str.
           E2348/69]
 gi|217326355|ref|ZP_03442439.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str.
           TW14588]
 gi|218552941|ref|YP_002385854.1| D-alanyl-alanine synthetase A [Escherichia coli IAI1]
 gi|218693840|ref|YP_002401507.1| D-alanyl-alanine synthetase A [Escherichia coli 55989]
 gi|218698715|ref|YP_002406344.1| D-alanyl-alanine synthetase A [Escherichia coli IAI39]
 gi|238899671|ref|YP_002925467.1| D-alanine-D-alanine ligase A [Escherichia coli BW2952]
 gi|253774637|ref|YP_003037468.1| D-alanyl-alanine synthetase A [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254160447|ref|YP_003043555.1| D-alanyl-alanine synthetase A [Escherichia coli B str. REL606]
 gi|254791557|ref|YP_003076394.1| D-alanyl-alanine synthetase A [Escherichia coli O157:H7 str.
           TW14359]
 gi|256024002|ref|ZP_05437867.1| D-alanyl-alanine synthetase A [Escherichia sp. 4_1_40B]
 gi|260842581|ref|YP_003220359.1| D-alanine-D-alanine ligase A [Escherichia coli O103:H2 str. 12009]
 gi|260853603|ref|YP_003227494.1| D-alanine-D-alanine ligase A [Escherichia coli O26:H11 str. 11368]
 gi|260866542|ref|YP_003232944.1| D-alanine-D-alanine ligase A [Escherichia coli O111:H- str. 11128]
 gi|293408524|ref|ZP_06652363.1| D-alanine-D-alanine ligase A [Escherichia coli B354]
 gi|293413632|ref|ZP_06656281.1| D-alanine-D-alanine ligase [Escherichia coli B185]
 gi|293418448|ref|ZP_06660883.1| D-alanine-D-alanine ligase [Escherichia coli B088]
 gi|297517452|ref|ZP_06935838.1| D-alanyl-alanine synthetase A [Escherichia coli OP50]
 gi|300818299|ref|ZP_07098510.1| D-ala D-ala ligase [Escherichia coli MS 107-1]
 gi|300820384|ref|ZP_07100536.1| D-ala D-ala ligase [Escherichia coli MS 119-7]
 gi|300903359|ref|ZP_07121287.1| D-ala D-ala ligase [Escherichia coli MS 84-1]
 gi|300930329|ref|ZP_07145741.1| D-ala D-ala ligase [Escherichia coli MS 187-1]
 gi|300936362|ref|ZP_07151290.1| D-ala D-ala ligase [Escherichia coli MS 21-1]
 gi|300947975|ref|ZP_07162120.1| D-ala D-ala ligase [Escherichia coli MS 116-1]
 gi|300957935|ref|ZP_07170104.1| D-ala D-ala ligase [Escherichia coli MS 175-1]
 gi|301025474|ref|ZP_07189021.1| D-ala D-ala ligase [Escherichia coli MS 69-1]
 gi|301025803|ref|ZP_07189310.1| D-ala D-ala ligase [Escherichia coli MS 196-1]
 gi|301301524|ref|ZP_07207659.1| D-ala D-ala ligase [Escherichia coli MS 124-1]
 gi|301647295|ref|ZP_07247111.1| D-ala D-ala ligase [Escherichia coli MS 146-1]
 gi|307137022|ref|ZP_07496378.1| D-alanyl-alanine synthetase A [Escherichia coli H736]
 gi|309794898|ref|ZP_07689319.1| D-ala D-ala ligase [Escherichia coli MS 145-7]
 gi|312964607|ref|ZP_07778858.1| D-alanine--D-alanine ligase [Escherichia coli 2362-75]
 gi|312970473|ref|ZP_07784654.1| D-alanine--D-alanine ligase [Escherichia coli 1827-70]
 gi|331640894|ref|ZP_08342029.1| D-alanine--D-alanine ligase A (D-alanylalanine synthetaseA)
           (D-Ala-D-Ala ligase A) [Escherichia coli H736]
 gi|331676046|ref|ZP_08376758.1| D-alanine--D-alanine ligase A (D-alanylalanine synthetaseA)
           (D-Ala-D-Ala ligase A) [Escherichia coli H591]
 gi|331681772|ref|ZP_08382405.1| D-alanine--D-alanine ligase A (D-alanylalanine synthetaseA)
           (D-Ala-D-Ala ligase A) [Escherichia coli H299]
 gi|62288066|sp|P0A6J8|DDLA_ECOLI RecName: Full=D-alanine--D-alanine ligase A; AltName:
           Full=D-Ala-D-Ala ligase A; AltName: Full=D-alanylalanine
           synthetase A
 gi|62288067|sp|P0A6J9|DDLA_ECO57 RecName: Full=D-alanine--D-alanine ligase A; AltName:
           Full=D-Ala-D-Ala ligase A; AltName: Full=D-alanylalanine
           synthetase A
 gi|62288068|sp|P0A6K0|DDLA_SHIFL RecName: Full=D-alanine--D-alanine ligase A; AltName:
           Full=D-Ala-D-Ala ligase A; AltName: Full=D-alanylalanine
           synthetase A
 gi|12513221|gb|AAG54727.1|AE005217_5 hypothetical protein Z0477 [Escherichia coli O157:H7 str. EDL933]
 gi|145722|gb|AAA23671.1| D-alanine:D-alanine ligase A [Escherichia coli str. K-12 substr.
           W3110]
 gi|1657576|gb|AAB18104.1| D-alanine--D-alanine ligase A [Escherichia coli str. K-12 substr.
           MG1655]
 gi|1786579|gb|AAC73484.1| D-alanine-D-alanine ligase A [Escherichia coli str. K-12 substr.
           MG1655]
 gi|13359888|dbj|BAB33854.1| D-alanine-D-alanine ligase A [Escherichia coli O157:H7 str. Sakai]
 gi|24050453|gb|AAN41894.1| D-alanine-D-alanine ligase A [Shigella flexneri 2a str. 301]
 gi|30040048|gb|AAP15782.1| D-alanine-D-alanine ligase A [Shigella flexneri 2a str. 2457T]
 gi|85674522|dbj|BAE76162.1| D-alanine-D-alanine ligase A [Escherichia coli str. K12 substr.
           W3110]
 gi|157065578|gb|ABV04833.1| D-alanine--D-alanine ligase A [Escherichia coli HS]
 gi|157077066|gb|ABV16774.1| D-alanine--D-alanine ligase A [Escherichia coli E24377A]
 gi|169756174|gb|ACA78873.1| D-alanine--D-alanine ligase [Escherichia coli ATCC 8739]
 gi|169887803|gb|ACB01510.1| D-alanine-D-alanine ligase A [Escherichia coli str. K-12 substr.
           DH10B]
 gi|170522033|gb|ACB20211.1| D-alanine--D-alanine ligase A [Escherichia coli SMS-3-5]
 gi|187768284|gb|EDU32128.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str.
           EC4196]
 gi|188015916|gb|EDU54038.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str.
           EC4113]
 gi|188999359|gb|EDU68345.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str.
           EC4076]
 gi|189355976|gb|EDU74395.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str.
           EC4401]
 gi|189362532|gb|EDU80951.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str.
           EC4486]
 gi|189368055|gb|EDU86471.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str.
           EC4501]
 gi|189377439|gb|EDU95855.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str. EC508]
 gi|190903247|gb|EDV62969.1| D-alanine--D-alanine ligase A [Escherichia coli B7A]
 gi|192927188|gb|EDV81809.1| D-alanine--D-alanine ligase A [Escherichia coli E22]
 gi|192958036|gb|EDV88478.1| D-alanine--D-alanine ligase A [Escherichia coli E110019]
 gi|194413142|gb|EDX29429.1| D-alanine--D-alanine ligase A [Escherichia coli B171]
 gi|194422163|gb|EDX38165.1| D-alanine--D-alanine ligase A [Escherichia coli 101-1]
 gi|208728784|gb|EDZ78385.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str.
           EC4206]
 gi|208732185|gb|EDZ80873.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str.
           EC4045]
 gi|208737048|gb|EDZ84732.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str.
           EC4042]
 gi|209161111|gb|ACI38544.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str.
           EC4115]
 gi|209744404|gb|ACI70509.1| D-alanine-D-alanine ligase A [Escherichia coli]
 gi|209744406|gb|ACI70510.1| D-alanine-D-alanine ligase A [Escherichia coli]
 gi|209744408|gb|ACI70511.1| D-alanine-D-alanine ligase A [Escherichia coli]
 gi|209744412|gb|ACI70513.1| D-alanine-D-alanine ligase A [Escherichia coli]
 gi|209910851|dbj|BAG75925.1| D-alanine-D-alanine ligase [Escherichia coli SE11]
 gi|215263535|emb|CAS07865.1| D-alanine-D-alanine ligase A [Escherichia coli O127:H6 str.
           E2348/69]
 gi|217322576|gb|EEC31000.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str.
           TW14588]
 gi|218350572|emb|CAU96260.1| D-alanine-D-alanine ligase A [Escherichia coli 55989]
 gi|218359709|emb|CAQ97250.1| D-alanine-D-alanine ligase A [Escherichia coli IAI1]
 gi|218368701|emb|CAR16441.1| D-alanine-D-alanine ligase A [Escherichia coli IAI39]
 gi|238860727|gb|ACR62725.1| D-alanine-D-alanine ligase A [Escherichia coli BW2952]
 gi|253325681|gb|ACT30283.1| D-alanine/D-alanine ligase [Escherichia coli 'BL21-Gold(DE3)pLysS
           AG']
 gi|253972348|gb|ACT38019.1| D-alanylalanine synthetase [Escherichia coli B str. REL606]
 gi|253976557|gb|ACT42227.1| D-alanylalanine synthetase [Escherichia coli BL21(DE3)]
 gi|254590957|gb|ACT70318.1| D-alanine-D-alanine ligase A [Escherichia coli O157:H7 str.
           TW14359]
 gi|257752252|dbj|BAI23754.1| D-alanine-D-alanine ligase A [Escherichia coli O26:H11 str. 11368]
 gi|257757728|dbj|BAI29225.1| D-alanine-D-alanine ligase A [Escherichia coli O103:H2 str. 12009]
 gi|257762898|dbj|BAI34393.1| D-alanine-D-alanine ligase A [Escherichia coli O111:H- str. 11128]
 gi|260450431|gb|ACX40853.1| D-alanine/D-alanine ligase [Escherichia coli DH1]
 gi|281599594|gb|ADA72578.1| D-alanine--D-alanine ligase A [Shigella flexneri 2002017]
 gi|284920187|emb|CBG33246.1| D-alanine:D-alanine ligase A [Escherichia coli 042]
 gi|291324976|gb|EFE64391.1| D-alanine-D-alanine ligase [Escherichia coli B088]
 gi|291433690|gb|EFF06663.1| D-alanine-D-alanine ligase [Escherichia coli B185]
 gi|291471702|gb|EFF14185.1| D-alanine-D-alanine ligase A [Escherichia coli B354]
 gi|299879945|gb|EFI88156.1| D-ala D-ala ligase [Escherichia coli MS 196-1]
 gi|300315374|gb|EFJ65158.1| D-ala D-ala ligase [Escherichia coli MS 175-1]
 gi|300395989|gb|EFJ79527.1| D-ala D-ala ligase [Escherichia coli MS 69-1]
 gi|300404654|gb|EFJ88192.1| D-ala D-ala ligase [Escherichia coli MS 84-1]
 gi|300452474|gb|EFK16094.1| D-ala D-ala ligase [Escherichia coli MS 116-1]
 gi|300458468|gb|EFK21961.1| D-ala D-ala ligase [Escherichia coli MS 21-1]
 gi|300461789|gb|EFK25282.1| D-ala D-ala ligase [Escherichia coli MS 187-1]
 gi|300527169|gb|EFK48238.1| D-ala D-ala ligase [Escherichia coli MS 119-7]
 gi|300529190|gb|EFK50252.1| D-ala D-ala ligase [Escherichia coli MS 107-1]
 gi|300843021|gb|EFK70781.1| D-ala D-ala ligase [Escherichia coli MS 124-1]
 gi|301074559|gb|EFK89365.1| D-ala D-ala ligase [Escherichia coli MS 146-1]
 gi|308121551|gb|EFO58813.1| D-ala D-ala ligase [Escherichia coli MS 145-7]
 gi|309700643|emb|CBI99939.1| D-alanine:D-alanine ligase A [Escherichia coli ETEC H10407]
 gi|310337122|gb|EFQ02260.1| D-alanine--D-alanine ligase [Escherichia coli 1827-70]
 gi|312290628|gb|EFR18506.1| D-alanine--D-alanine ligase [Escherichia coli 2362-75]
 gi|313646690|gb|EFS11149.1| D-alanine--D-alanine ligase [Shigella flexneri 2a str. 2457T]
 gi|313848548|emb|CAQ30849.2| D-alanine-D-alanine ligase A [Escherichia coli BL21(DE3)]
 gi|315135064|dbj|BAJ42223.1| D-alanyl-alanine synthetase A [Escherichia coli DH1]
 gi|315256200|gb|EFU36168.1| D-ala D-ala ligase [Escherichia coli MS 85-1]
 gi|315616714|gb|EFU97331.1| D-alanine--D-alanine ligase [Escherichia coli 3431]
 gi|320181640|gb|EFW56555.1| D-alanine--D-alanine ligase [Shigella boydii ATCC 9905]
 gi|320192788|gb|EFW67428.1| D-alanine--D-alanine ligase [Escherichia coli O157:H7 str. EC1212]
 gi|320638368|gb|EFX08082.1| D-alanyl-alanine synthetase A [Escherichia coli O157:H7 str. G5101]
 gi|320643749|gb|EFX12872.1| D-alanyl-alanine synthetase A [Escherichia coli O157:H- str.
           493-89]
 gi|320649099|gb|EFX17677.1| D-alanyl-alanine synthetase A [Escherichia coli O157:H- str. H
           2687]
 gi|320655992|gb|EFX23908.1| D-alanyl-alanine synthetase A [Escherichia coli O55:H7 str. 3256-97
           TW 07815]
 gi|320662549|gb|EFX29938.1| D-alanyl-alanine synthetase A [Escherichia coli O55:H7 str. USDA
           5905]
 gi|320665119|gb|EFX32212.1| D-alanyl-alanine synthetase A [Escherichia coli O157:H7 str.
           LSU-61]
 gi|323152152|gb|EFZ38445.1| D-alanine--D-alanine ligase [Escherichia coli EPECa14]
 gi|323160514|gb|EFZ46462.1| D-alanine--D-alanine ligase [Escherichia coli E128010]
 gi|323164166|gb|EFZ49973.1| D-alanine--D-alanine ligase [Shigella sonnei 53G]
 gi|323178359|gb|EFZ63937.1| D-alanine--D-alanine ligase [Escherichia coli 1180]
 gi|323184795|gb|EFZ70166.1| D-alanine--D-alanine ligase [Escherichia coli 1357]
 gi|323938565|gb|EGB34814.1| D-alanine-D-alanine ligase [Escherichia coli E1520]
 gi|323943187|gb|EGB39343.1| D-alanine-D-alanine ligase [Escherichia coli E482]
 gi|323945367|gb|EGB41422.1| D-alanine-D-alanine ligase [Escherichia coli H120]
 gi|323963366|gb|EGB58928.1| D-alanine-D-alanine ligase [Escherichia coli H489]
 gi|323972229|gb|EGB67439.1| D-alanine-D-alanine ligase [Escherichia coli TA007]
 gi|324016623|gb|EGB85842.1| D-ala D-ala ligase [Escherichia coli MS 117-3]
 gi|324116864|gb|EGC10777.1| D-alanine-D-alanine ligase [Escherichia coli E1167]
 gi|326341135|gb|EGD64927.1| D-alanine--D-alanine ligase [Escherichia coli O157:H7 str. 1044]
 gi|326346089|gb|EGD69828.1| D-alanine--D-alanine ligase [Escherichia coli O157:H7 str. 1125]
 gi|331037692|gb|EGI09912.1| D-alanine--D-alanine ligase A (D-alanylalanine synthetaseA)
           (D-Ala-D-Ala ligase A) [Escherichia coli H736]
 gi|331076104|gb|EGI47386.1| D-alanine--D-alanine ligase A (D-alanylalanine synthetaseA)
           (D-Ala-D-Ala ligase A) [Escherichia coli H591]
 gi|331080974|gb|EGI52139.1| D-alanine--D-alanine ligase A (D-alanylalanine synthetaseA)
           (D-Ala-D-Ala ligase A) [Escherichia coli H299]
 gi|332341742|gb|AEE55076.1| D-alanine-D-alanine ligase A DdlA [Escherichia coli UMNK88]
 gi|332758117|gb|EGJ88442.1| D-alanine--D-alanine ligase [Shigella flexneri 2747-71]
 gi|332761807|gb|EGJ92084.1| D-alanine--D-alanine ligase [Shigella flexneri 4343-70]
 gi|332764672|gb|EGJ94902.1| D-alanine--D-alanine ligase [Shigella flexneri K-671]
 gi|332768638|gb|EGJ98819.1| D-alanine-D-alanine ligase A [Shigella flexneri 2930-71]
 gi|333003877|gb|EGK23412.1| D-alanine--D-alanine ligase [Shigella flexneri K-218]
 gi|333010817|gb|EGK30243.1| D-alanine--D-alanine ligase [Shigella flexneri K-272]
 gi|333021315|gb|EGK40568.1| D-alanine--D-alanine ligase [Shigella flexneri K-227]
 gi|333022055|gb|EGK41300.1| D-alanine--D-alanine ligase [Shigella flexneri K-304]
          Length = 364

 Score =  317 bits (814), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 90/348 (25%), Positives = 166/348 (47%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP- 51
           + ++ GG S+E EVSL S K    A++ + F V  + +D+            +L    P 
Sbjct: 6   VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPA 65

Query: 52  ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
                                             D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  HIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLISPPYVIK 131
           P+  S +LASA  MDK  +K+++   G+ + P I + R         + +  +  P  +K
Sbjct: 126 PFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  +  ++   + +  +  ++H  ++++EQ + G E+ C V+G+ +   + 
Sbjct: 186 PANQGSSVGVSKVTSEEQYAIAVDLAFEFDH--KVIVEQGIKGREIECAVLGNDNPQAST 243

Query: 192 IA--VPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               V  SDFY+Y+ KY     +  V+PA I  +I  +++ +A  A+Q +GC G++R D 
Sbjct: 244 CGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              P   +V   EIN  PG T +S++P++   +G  + +L+  ++E A
Sbjct: 304 FLTP-ENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350


>gi|186477419|ref|YP_001858889.1| D-alanine--D-alanine ligase [Burkholderia phymatum STM815]
 gi|229463737|sp|B2JHF8|DDL_BURP8 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|184193878|gb|ACC71843.1| D-alanine--D-alanine ligase [Burkholderia phymatum STM815]
          Length = 313

 Score =  317 bits (814), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 99/300 (33%), Positives = 156/300 (52%), Gaps = 11/300 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SG+     L DAG      D        L       AFN LHG
Sbjct: 12  VAVLLGGASAEREVSLNSGRLVLQGLRDAGVDAYAFDPAERPLAALKDEGFVRAFNALHG 71

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GE+G +Q  L+   I YT SG+L SAL +DK R+K V    G+P  P   V R    +
Sbjct: 72  GYGENGQIQGALDFYGIRYTGSGVLGSALGLDKFRTKLVWQQLGIPTPPFEAVLRGDDYA 131

Query: 121 Q------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD- 173
                    +  P  +KP   GSS+ +I +K   ++   L ++  +     +++E+ ++ 
Sbjct: 132 ARAQGIVAKLGLPLFVKPASEGSSVAVIKVKTADALVPALEEAVKF--DKIVVVEKSIEG 189

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           G E T  + GD  L +  I VP  +FY Y  KY + ++ +++P  I  +    +++LA  
Sbjct: 190 GGEYTACIAGDLDLPIIRI-VPAGEFYDYHAKYIANDTQYMIPCGIAAEEEARLKKLARQ 248

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           A   +GC    R+DF+ D      ++LE+N  PGMT  S+ P+ A   G S++EL++ ++
Sbjct: 249 AFDVLGCTDWGRADFMLDGEGNA-YFLEVNTAPGMTDHSLPPKAARAVGISYQELVVKVL 307


>gi|148259087|ref|YP_001233214.1| D-alanine--D-alanine ligase [Acidiphilium cryptum JF-5]
 gi|190359105|sp|A5FUL3|DDL_ACICJ RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|146400768|gb|ABQ29295.1| D-alanine--D-alanine ligase [Acidiphilium cryptum JF-5]
          Length = 301

 Score =  317 bits (814), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 132/301 (43%), Positives = 192/301 (63%), Gaps = 6/301 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL--KPDLAFNVL 58
           +AVL+GGIS EREVSL+SG+  A+AL  AG+ V +I+V   +G V+A L   PD  FN L
Sbjct: 4   VAVLLGGISEEREVSLASGRQVAAALRKAGYDVFEIEVGADLGAVIAALTPAPDAVFNAL 63

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
           HG FGEDG +Q +L+ + IPYTHSG+ AS+++MDK  +K V ++ G+P+    +V    +
Sbjct: 64  HGRFGEDGTIQGVLDYMGIPYTHSGVRASSMAMDKGAAKAVFAAAGLPLAQHRIVPLDEL 123

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                +  PYVIKP+  GSS+G+ ++++  +   D+  + +W HG   + E+YV G ELT
Sbjct: 124 AEADPLPRPYVIKPVNEGSSVGVFILREGDNRRADI--ARAWRHGSVAMTEEYVPGRELT 181

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             V+ D +L VTEI      FY Y  KY++  S H +PA +P  +    + +A  AH+A+
Sbjct: 182 VSVLEDRALAVTEIRA--EGFYDYTAKYAAGASRHEIPADVPPSVSARARDVAVAAHRAL 239

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           GCRG +RSDF +D  + ++  LE+N QPGMTP S+ PE AA+ G  F  L  WMVE+A+C
Sbjct: 240 GCRGATRSDFRYDDETDRLVLLEVNTQPGMTPTSLLPEQAAHCGIDFPALCAWMVENAAC 299

Query: 299 L 299
            
Sbjct: 300 R 300


>gi|308388626|gb|ADO30946.1| D-alanine--D-alanine ligase B [Neisseria meningitidis alpha710]
 gi|325130850|gb|EGC53583.1| D-alanine--D-alanine ligase B [Neisseria meningitidis OX99.30304]
          Length = 304

 Score =  317 bits (814), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 105/299 (35%), Positives = 158/299 (52%), Gaps = 7/299 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSERE+SL SG A  +AL+  G      D   +    L       AFN+LHG
Sbjct: 7   VAVLMGGFSSEREISLDSGTAILNALKSKGIDAYAFDPKETPLSELKAQGFQTAFNILHG 66

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--M 118
            +GEDG VQ  LELL IPYT SG+ ASA+ MDK R K +  + G+PV    +++  T   
Sbjct: 67  TYGEDGAVQGALELLGIPYTGSGVAASAIGMDKYRCKLIWQALGLPVPEFAVLHDDTDFD 126

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
             +  +  P  +KP   GSS+G++ +K+   +    +     +   +++ E+++ G E +
Sbjct: 127 AVEEKLGLPMFVKPAAEGSSVGVVKVKEKGRLKS--VYEELKHLQGEIIAERFIGGGEYS 184

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQA 237
           C V+    L    I +P ++FY YE KY+  ++ +  P   +       ++ LA    QA
Sbjct: 185 CPVLNGKGLPGIHI-IPATEFYDYEAKYNRDDTIYQCPSEDLTEAEESLMRELAVRGAQA 243

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           IG  G  R DF       K++ LEIN  PGMT  S+ P+ AA  G  F +L + +++ A
Sbjct: 244 IGAEGCVRVDF-LKDTDGKLYLLEINTLPGMTSHSLVPKSAAVTGVGFADLCIEILKTA 301


>gi|238752552|ref|ZP_04614026.1| D-alanine--D-alanine ligase [Yersinia rohdei ATCC 43380]
 gi|238709227|gb|EEQ01471.1| D-alanine--D-alanine ligase [Yersinia rohdei ATCC 43380]
          Length = 366

 Score =  317 bits (814), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 96/348 (27%), Positives = 159/348 (45%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP- 51
           + V+ GG S+E EVSL S K    A++   F V  + +D+            +L    P 
Sbjct: 6   VGVIFGGKSAEHEVSLQSAKNIVEAIDTDKFDVMLLGIDKQGKWHVNDASSYLLNAENPA 65

Query: 52  ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
                                             D+ F ++HG  GEDG +Q +L +  I
Sbjct: 66  LISLNHSNRNVALIPGQENQQLIAADNAAVLAQLDVIFPIVHGTLGEDGSLQGLLRMANI 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVIK 131
           P+  SG+L SA+SMDK  +K+++   G+ + P I + R   D+         +  P  IK
Sbjct: 126 PFVGSGVLGSAVSMDKDITKRLLRDAGLNIAPFITLTRSNKDNYSFEQVTEKLGLPLFIK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  ++        +  +  ++H  ++L+E  + G E+ C VMG+ S   + 
Sbjct: 186 PANQGSSVGVSKVRNAAEYQQAVALAFDFDH--KVLVESAIVGREIECAVMGNDSPQASV 243

Query: 192 I--AVPKSDFYSYELKYSSLN-STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               V   +FYSY+ KY + + +  ++PA I  D    ++ +A  A  A+ CRG++R D 
Sbjct: 244 CGEVVISDEFYSYDTKYINESGAQVIIPAAIDTDASDRIRAVALAAFSALECRGMARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              P    V   EIN  PG T +S++P++    G    EL+  ++E A
Sbjct: 304 FLTP-DNTVIINEINTLPGFTNISMYPKLWRATGIGSTELITTLIELA 350


>gi|109899818|ref|YP_663073.1| D-alanine--D-alanine ligase [Pseudoalteromonas atlantica T6c]
 gi|122971621|sp|Q15Q19|DDL_PSEA6 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|109702099|gb|ABG42019.1| D-alanine--D-alanine ligase [Pseudoalteromonas atlantica T6c]
          Length = 318

 Score =  317 bits (814), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 106/302 (35%), Positives = 159/302 (52%), Gaps = 10/302 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AV+ GG S+EREVSL SG+A  SAL  AG      D   S    L   K D    +LHG
Sbjct: 20  VAVMFGGRSAEREVSLRSGQAVLSALISAGVNAHGFDPAESELHQLVEQKFDRVLIMLHG 79

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118
             GEDG +Q  L+ + +PYT +G+L SAL MDK+RSKQV  S G+P     + ++     
Sbjct: 80  RGGEDGSLQGALQQMNMPYTGTGVLGSALCMDKIRSKQVWQSLGLPTANYEIADKRDFNA 139

Query: 119 ----DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
               D    +    ++KP + GSS+G+  +   Q +        ++ + D++L+EQ++ G
Sbjct: 140 ANCSDIMSRLGDLVMVKPAQEGSSIGMAKVSNAQQLAA--AIQQAFEYDDKVLLEQFIQG 197

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
            E T  ++   ++    ++ P+ DFY YE KY S  + +  P+ +P +    + RLA  A
Sbjct: 198 SEYTVSLLNGEAMPSISMSTPR-DFYDYEAKYQSNTTEYFCPSGLPAEQEGLLARLALDA 256

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             A+   G  R DF+ D L  + + LE N  PGMT  S+ P  A  AG SF +L L ++ 
Sbjct: 257 FDAVAGSGWGRVDFMQDML-GQFYLLEANTVPGMTEKSLVPLAAKQAGLSFEQLSLAVLA 315

Query: 295 DA 296
            A
Sbjct: 316 TA 317


>gi|74310948|ref|YP_309367.1| D-alanyl-alanine synthetase A [Shigella sonnei Ss046]
 gi|73854425|gb|AAZ87132.1| D-alanine-D-alanine ligase A [Shigella sonnei Ss046]
          Length = 364

 Score =  317 bits (814), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 90/348 (25%), Positives = 166/348 (47%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP- 51
           + ++ GG S+E EVSL S K    A++ + F V  + +D+            +L    P 
Sbjct: 6   VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPA 65

Query: 52  ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
                                             D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  HIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLISPPYVIK 131
           P+  S +LASA  MDK  +K+++   G+ + P I + R         + +  +  P  +K
Sbjct: 126 PFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  +  ++   + +  +  ++H  ++++EQ + G E+ C V+G+ +   + 
Sbjct: 186 PANQGSSVGVSKVTSEEQYAIAVDLAFEFDH--KVIVEQGIKGREIECAVLGNDNPQAST 243

Query: 192 IA--VPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               V  SDFY+Y+ KY     +  V+PA I  +I  +++ +A  A+Q +GC G++R D 
Sbjct: 244 CGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              P   +V   EIN  PG T +S++P++   +G  + +L+  ++E A
Sbjct: 304 FLTP-ENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350


>gi|325283553|ref|YP_004256094.1| D-alanine--D-alanine ligase [Deinococcus proteolyticus MRP]
 gi|324315362|gb|ADY26477.1| D-alanine--D-alanine ligase [Deinococcus proteolyticus MRP]
          Length = 360

 Score =  317 bits (814), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 90/335 (26%), Positives = 157/335 (46%), Gaps = 39/335 (11%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL------------- 49
           +L GG S E EVSLSS ++  +AL    F+V+ + + +    +                 
Sbjct: 28  LLAGGQSEEHEVSLSSARSVLAALPQDRFEVTAVVISKQGRWLPPAETAQALGAGAAESG 87

Query: 50  ------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSK 97
                         D+ F +LHG  GEDG VQ +L L  +P+  SG+L S++ MDK+ +K
Sbjct: 88  GEPMLQRVSDTAGYDVVFPLLHGPMGEDGTVQGLLTLAGLPFVGSGVLGSSVGMDKIMTK 147

Query: 98  QVVSSCGVPVCPSILVNRFTM--------DSQHLISPPYVIKPLKGGSSLGIIVIKKDQS 149
           +V+ + G+P       +R                +  P  +KP   GSS+G+  +     
Sbjct: 148 RVLEAAGIPQVAWREASRAEWRRDPQGVQSRAAELGFPLFVKPANMGSSVGVSRVTGAGE 207

Query: 150 IPLDLLQSSSWNHGDQLLIEQYV--DGIELTCGVMGDASLDVTEIAVP--KSDFYSYELK 205
           +   L    ++ H  ++++E        E+  G++G+     + +      +DFY Y+ K
Sbjct: 208 LAEAL--ELAFGHDRRVIVEAAAGAKPREVEVGILGNDDPVASPVGELRFDTDFYDYDTK 265

Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           Y+   +  ++PA +P  + + +Q LA  A+QA+ C G+SR DF +   + ++   EIN  
Sbjct: 266 YTGGRAEMLIPAPLPEGVSERIQELALRAYQALDCAGLSRVDFFYVEETGELLLNEINTM 325

Query: 266 PGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           PG T  S++P +    G S+ EL+  ++E A   R
Sbjct: 326 PGFTTTSMYPSLLQAHGLSYPELVTRLIELALEER 360


>gi|251777600|ref|ZP_04820520.1| D-alanine--D-alanine ligase [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
 gi|243081915|gb|EES47805.1| D-alanine--D-alanine ligase [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
          Length = 301

 Score =  317 bits (814), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 101/299 (33%), Positives = 169/299 (56%), Gaps = 8/299 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGGISSERE+SL SGK+   ++    ++V  I +D    ++      D A   LHG
Sbjct: 3   VGVIMGGISSEREISLKSGKSIVDSINKNKYEVVSIVIDEKEDIINKIKGIDFALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118
            FGEDG VQ++L+ L IPY+  G L+SA+ MDK  SK ++ +  +   P I + +     
Sbjct: 63  QFGEDGTVQSVLQTLGIPYSGCGPLSSAMCMDKDISKCILKAANIRTAPWINLRKNDAIN 122

Query: 119 -DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            +    +  P V+KP  GGSS+   +IK+++ I   + +   W    +++IE+++ G E+
Sbjct: 123 YEEIEKMGYPVVVKPTHGGSSVATFIIKEEKDIKDAVREGFKW--DSEVIIEKFIKGDEI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC V GD  L V  I  PK++F+ +  KY+   S   +  ++P  +++EV+ +A   ++A
Sbjct: 181 TCPVFGDKMLPVVAIK-PKAEFFDFTAKYADGGSDEFV-TELPKKLHEEVEEMALATYKA 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           + C   SR D +     +  + LE+N  PGMTP S+ P+ AA    SF EL+  +++++
Sbjct: 239 LKCEVYSRVDMIVTE-DKVPYILEVNTLPGMTPNSLIPKSAAGVNISFTELIDMIIDES 296


>gi|307129501|ref|YP_003881517.1| D-alanine--D-alanine ligase [Dickeya dadantii 3937]
 gi|306527030|gb|ADM96960.1| D-alanine--D-alanine ligase [Dickeya dadantii 3937]
          Length = 366

 Score =  317 bits (813), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 87/348 (25%), Positives = 159/348 (45%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP- 51
           + V+ GG SSE EVSL S K    A++   F V  + +D+            +L    P 
Sbjct: 6   VGVVFGGKSSEHEVSLQSAKNIVDAIDKTRFDVVLLGIDKQGEWHVNDASNYLLNADNPA 65

Query: 52  ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
                                             D+ F ++HG  GEDG +Q +L +  I
Sbjct: 66  LIALNRSSQNVALIPGQTHHQLIDTASASALSQIDVIFPIVHGTLGEDGSLQGLLRMANI 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ------HLISPPYVIK 131
           P+  S +L SA+SMDK  +K+++   G+ V P + + R              +  P  +K
Sbjct: 126 PFIGSSVLGSAVSMDKDVTKRLLRDAGLQVAPFVTLTRANRARHPYDSVTAQLGLPLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  ++        +    ++ +  ++L+E  + G E+ C V+G+     + 
Sbjct: 186 PANQGSSVGVSKVRNQAEFERAVDL--AFRYDHKVLVESAIVGREIECAVLGNDYPKASV 243

Query: 192 IA--VPKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               V   +FYSY+ KY + +   V +PA +  ++++ ++ +A  A Q + C+G++R D 
Sbjct: 244 CGEIVLHDEFYSYDTKYINEDGAAVAIPAAMDDEVHQHIRDIALRAFQTLDCQGMARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              P  ++V   E+N  PG T +S++P++   +G  +  L+  ++E A
Sbjct: 304 FLTP-DQQVVVNEVNTLPGFTNISMYPKLWEASGLGYTALITQLIELA 350


>gi|206900336|ref|YP_002250669.1| D-alanine--D-alanine ligase [Dictyoglomus thermophilum H-6-12]
 gi|206739439|gb|ACI18497.1| D-alanine--D-alanine ligase [Dictyoglomus thermophilum H-6-12]
          Length = 311

 Score =  317 bits (813), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 100/306 (32%), Positives = 180/306 (58%), Gaps = 15/306 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VL+G  SSE+E++  + +   +AL+  G+   +I +D +V   +     ++A    HG
Sbjct: 3   IGVLIGVKSSEKEIAFKTARNIVNALKLKGYDYIEIPIDENVVENIKKANINVAIISAHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG +Q +LELL IPY  SG+LASAL++DK  +K++ +   +P    I +++  +++
Sbjct: 63  KYGEDGTIQGLLELLGIPYVGSGVLASALALDKTMAKKIFTFHNIPTPKWIELSKKELET 122

Query: 121 QHL---------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
           + L         +  P++IKP   GS++G+ +   ++ +   +    ++ + + ++IE+Y
Sbjct: 123 KDLNNIVKNVSKLKKPWIIKPATQGSTIGLSLASTEEELLKGI--ELAFKYDENIIIEEY 180

Query: 172 VDGIELTCGVMG---DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           + G E+T G+        L + EI +PK+ FY YE KY+   S H++PA++P ++Y++ Q
Sbjct: 181 IKGKEITAGIYDINNPVCLPLIEI-IPKTGFYDYETKYTPGLSDHIIPARLPKEVYEKAQ 239

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
            L  LAHQA+GCR +SR D + +  +  ++ LE+N  PGMT  S++PE A   G  F EL
Sbjct: 240 GLGILAHQALGCRHLSRVDMIVEENTNHIYVLEVNTIPGMTETSLYPEAAKAFGIDFPEL 299

Query: 289 LLWMVE 294
           +   ++
Sbjct: 300 IDSFIK 305


>gi|304560494|gb|ADM43158.1| D-alanine--D-alanine ligase [Edwardsiella tarda FL6-60]
          Length = 367

 Score =  317 bits (813), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 91/348 (26%), Positives = 164/348 (47%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           + ++ GG S E EVSL S K    A++ + F V+ I +D+     L              
Sbjct: 6   VGIVFGGQSCEHEVSLQSAKNIVEAIDQSRFDVTLIGIDKQGYWHLCGGQDYLNHAQDPQ 65

Query: 47  -------------------------AHLKP----DLAFNVLHGNFGEDGLVQAILELLEI 77
                                    A  +P    D+ F ++HG  GEDG +Q +L++L +
Sbjct: 66  HIALNHSERRLAVIPGATQGQLIDSASGEPLPSLDVIFPIVHGTQGEDGCLQGMLKMLNL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVIK 131
           P+  S ++ SA  MDK   K+++   G+P+ P + + R T  +      +  +     +K
Sbjct: 126 PFVGSDVIGSAACMDKEVCKRLLRDAGLPITPFVTLTRATQANYDYETLRSQLGETLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  ++        +  +  ++H  ++++E+ V G E+ C ++G+ +   + 
Sbjct: 186 PANQGSSVGVSKVRNADEYHRAIADALRFDH--KVIVERGVVGREIECAILGNEAAQASV 243

Query: 192 IA--VPKSDFYSYELKYSSL-NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               V  SDFYSY+ KY S   +  V+PA +  +  + V+  A  A QA+ CRG++R D 
Sbjct: 244 CGEIVLHSDFYSYDSKYISAQGAQVVVPAAMAPEASERVRHTALRAFQALECRGLARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                  +V   EIN  PG T +S++P++   +G  ++ L+  ++E A
Sbjct: 304 FLTE-DNEVIINEINTLPGFTNISMYPKLWQASGIGYQALITRLIELA 350


>gi|254524840|ref|ZP_05136895.1| D-alanine--D-alanine ligase A [Stenotrophomonas sp. SKA14]
 gi|219722431|gb|EED40956.1| D-alanine--D-alanine ligase A [Stenotrophomonas sp. SKA14]
          Length = 370

 Score =  317 bits (813), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 90/348 (25%), Positives = 160/348 (45%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           + ++ GG SSE EVSL S K    AL+   F+   + +D+     L              
Sbjct: 15  VGIIFGGRSSEHEVSLQSAKNILDALDRERFEPVLVGIDKQGQWHLSQPDTFLLNGDDPS 74

Query: 47  -------------------AHLKP----------DLAFNVLHGNFGEDGLVQAILELLEI 77
                              A L+P          D+   ++HG  GEDG +Q +L +  +
Sbjct: 75  RIALHPSGQSLAVLPGTEQAQLRPSDAAATLGQIDVVLPIVHGPLGEDGALQGLLRMANL 134

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIK 131
           P+  S +L SA++MDK  +K+++   G+ V P + + R    +  +      +  P  +K
Sbjct: 135 PFVGSPVLGSAVAMDKDVTKRLLRDAGLQVAPWLCIRRHQAAAVDVETVIAQLGLPLFVK 194

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  +K+       L  +  ++H  ++L+E  V G E+ C V+G+A    + 
Sbjct: 195 PANQGSSVGVSKVKEAAGFAQALELALRYDH--KVLVESAVVGREIECAVLGNAQPQASL 252

Query: 192 I--AVPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               V   +FY+Y+ KY +   +  V+PA I       +Q++A  A+QA+ C G++R D 
Sbjct: 253 CGEVVVHDEFYAYDTKYINEGGADVVVPADIDAATQARIQQIALQAYQALECAGMARVDV 312

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                   +   E+N  PG T +S++P++   +G  +  L+  ++E A
Sbjct: 313 FLTA-DGDIVINEVNTLPGFTRISMYPKLWGASGVDYTTLITRLIELA 359


>gi|39931167|sp|Q8PDW3|DDLA_XANCP RecName: Full=D-alanine--D-alanine ligase A; AltName:
           Full=D-Ala-D-Ala ligase A; AltName: Full=D-alanylalanine
           synthetase A
 gi|21111185|gb|AAM39541.1| D-alanine-D-alanine ligase A [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66571909|gb|AAY47319.1| D-alanine-D-alanine ligase A [Xanthomonas campestris pv. campestris
           str. 8004]
          Length = 373

 Score =  317 bits (813), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 90/348 (25%), Positives = 158/348 (45%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           + ++ GG S+E EVSL S +    AL+   F+   I +D+     L+             
Sbjct: 11  VGLIFGGKSAEHEVSLQSARNILQALDPQRFEPVLIGIDKQGQWHLSAQESFLLDADDPS 70

Query: 50  --------------------------------KPDLAFNVLHGNFGEDGLVQAILELLEI 77
                                           + D+ F ++HG  GEDG +Q +L +  +
Sbjct: 71  RIALRHSGRGLAVLPGAASAQLRAVDAEQALAQIDVVFPIVHGTLGEDGSLQGLLRMANL 130

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIK 131
           P+  SG+L SA++MDK  +K+V+   G+ V P     R T     +         P  +K
Sbjct: 131 PFVGSGVLGSAVAMDKDMAKRVLRDAGLEVAPFACFTRHTAAQADVQTLIAQFGLPLFVK 190

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  ++  +     L  +  ++H  ++L+E  + G E+ C V+G+A+   + 
Sbjct: 191 PANQGSSVGVSQVRSAEEFSAALELALRYDH--KVLVEAAIAGREIECAVLGNATPQASV 248

Query: 192 I--AVPKSDFYSYELKYSSLN-STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               V    FYSY+ KY   + +  V+PA I       +Q+ A  A+QA+ C G++R D 
Sbjct: 249 CGEVVVHDAFYSYQTKYIRDDGAATVIPADIDAHTQHRIQQCALQAYQALDCAGMARVDV 308

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                  ++   E+N  PG T +S++P++   +G  +R L+  ++E A
Sbjct: 309 FL-CADGRIVINEVNTLPGFTRISMYPKLWEASGLDYRSLVTRLIELA 355


>gi|283471299|emb|CAQ50510.1| D-alanine--D-alanine ligase (D-alanylalanine
           synthetase)(D-Ala-D-Ala ligase) [Staphylococcus aureus
           subsp. aureus ST398]
          Length = 356

 Score =  317 bits (813), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 85/339 (25%), Positives = 151/339 (44%), Gaps = 46/339 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           + ++ GG S+E EVS+ + +   +A++   + V  I +         +            
Sbjct: 6   ICIVFGGKSAEHEVSILTAQNVLNAIDKDKYHVDIIYITNDGDWRKQNNITTEIKSTDEL 65

Query: 49  --------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
                                  D  F +LHG  GEDG +Q + E+L++PY  +G+L++A
Sbjct: 66  HLENGEALEISQLLKESSSGQPYDAVFPLLHGPNGEDGTIQGLFEVLDVPYVGNGVLSAA 125

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSL 139
            SMDK+  KQ+    G+P  P I   R   +             ++ P  +KP   GSS+
Sbjct: 126 SSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYEHNILKLVNDKLNYPVFVKPANLGSSV 185

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKS 197
           GI     +  +   + ++  ++   +L+IEQ V+  E+   V+G+   + T     V   
Sbjct: 186 GISKCNNEAELKEGIKEAFQFDR--KLVIEQGVNAREIEVAVLGNDYPEATWPGEVVKDV 243

Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
            FY Y+ KY        +PA +  D+   ++ +A  A +A  C G+ R+DF       ++
Sbjct: 244 AFYDYKSKYKDGKVQLQIPADLDEDVQLTLRNMALEAFKATDCSGLVRADFFVTE-DNQI 302

Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +  E N  PG T  S++P++    G S+ EL+  ++E A
Sbjct: 303 YINETNAMPGFTAFSMYPKLWENMGLSYPELITKLIELA 341


>gi|330889540|gb|EGH22201.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. mori str.
           301020]
          Length = 363

 Score =  317 bits (813), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 98/354 (27%), Positives = 174/354 (49%), Gaps = 57/354 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR--------SVGLVLAHLKP- 51
           +A++ GG SSE EVSL S +   +A++   + ++ I VD+            +L    P 
Sbjct: 5   VAIVFGGQSSEHEVSLQSARNVINAIDRERYTLTLIGVDKLGRWLRFDEADYLLNANDPA 64

Query: 52  ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
                                             D+ F ++HG FGEDG +Q +L +L +
Sbjct: 65  RIKLSASGKQLSLLPGSTGGQFVEVETGKPLAAIDVVFPLIHGAFGEDGALQGVLRMLAV 124

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT----MDSQHLISPPYVIKPL 133
           P+  + +LASA  MDK  +K+++   G+ V P ++++R       D+   +  P  +KP 
Sbjct: 125 PFVGADVLASAACMDKDVTKRLLRDAGIAVAPFMVLSRGETLSFADAATQLGLPMFVKPA 184

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG--DASLDVTE 191
             GSS+G+  +  +      L     ++H  +LLIEQ + G E+ C V+G  DA + V  
Sbjct: 185 NQGSSVGVSKVSDEAGFVAALALGFEFDH--KLLIEQGIVGREVECAVLGNFDAQVSVCG 242

Query: 192 IAVPKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
             +   +FY+Y+ KY + +   + +PA+ P D+  +V+ +A  A++ +GC G+SR DF  
Sbjct: 243 EVIANDEFYAYDTKYLNGDQARIAIPAEFPADLSDQVREVALQAYKVLGCAGLSRVDFFV 302

Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV----EDASCLR 300
              +R +   E+N  PG T +S++P++   +G ++ EL+  ++    E A   R
Sbjct: 303 T-DTRDIIINEVNTLPGFTSISMYPKLWQASGLTYAELIHRLIVLALERAEQAR 355


>gi|113477630|ref|YP_723691.1| D-alanyl-alanine synthetase A [Trichodesmium erythraeum IMS101]
 gi|123351842|sp|Q10X06|DDL_TRIEI RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|110168678|gb|ABG53218.1| D-alanine--D-alanine ligase [Trichodesmium erythraeum IMS101]
          Length = 366

 Score =  317 bits (813), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 91/357 (25%), Positives = 161/357 (45%), Gaps = 63/357 (17%)

Query: 1   MAVLMGGISSEREVSLSSGKACASAL----EDAGFKVSQIDVDRSVGLV----------- 45
           + +L GG S E EVS+ S K  A+AL        +++  I + ++               
Sbjct: 6   VGLLFGGCSGEHEVSIRSAKVIATALTKVQNKEKYELIPIYIQKNGLWQPSDFSQKVLNS 65

Query: 46  ---------------------------LAHLKP-----DLAFNVLHGNFGEDGLVQAILE 73
                                      L  + P     D+ F +LHG  GEDG +Q +L+
Sbjct: 66  DHPSLLQLTNENNHDLNTSLTQQSSSPLWQIPPQAAQVDVWFPILHGPNGEDGTIQGLLK 125

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM------------DSQ 121
           L+++P+  SG+L SA+ MDK+  K      G+P     +V R  +            D +
Sbjct: 126 LMQVPFVGSGVLGSAMGMDKIAMKIAFDHAGLPQVKYQVVTRSQIWSNSCVFPKLCDDIE 185

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
             +  P  +KP   GSS+GI  ++    +   L  ++S++   ++++E  V+  EL C V
Sbjct: 186 TTLEYPCFVKPANLGSSVGIAKVRSRSELETALDNAASYDR--RIIVEAGVEAKELECAV 243

Query: 182 MGDASLDVTEIAVP--KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
           +G+     + +      SDFY YE KY+   +   +PA++   I  +++ +A  A  A+ 
Sbjct: 244 LGNDMPKASIVGEITYNSDFYDYETKYTEGKADLHIPARVSEAIATKIKEMATQAFLAVD 303

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             G++R DF +   + ++   EIN  PG T  S++P +   +G  F EL+  +++ A
Sbjct: 304 AAGLARVDFFYVEKTGEILINEINTMPGFTSSSMYPMLWEASGIPFSELVDTLIQLA 360


>gi|77747741|ref|NP_635617.2| D-alanyl-alanine synthetase A [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|77761078|ref|YP_241339.2| D-alanyl-alanine synthetase A [Xanthomonas campestris pv.
           campestris str. 8004]
          Length = 368

 Score =  317 bits (813), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 90/348 (25%), Positives = 158/348 (45%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           + ++ GG S+E EVSL S +    AL+   F+   I +D+     L+             
Sbjct: 6   VGLIFGGKSAEHEVSLQSARNILQALDPQRFEPVLIGIDKQGQWHLSAQESFLLDADDPS 65

Query: 50  --------------------------------KPDLAFNVLHGNFGEDGLVQAILELLEI 77
                                           + D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  RIALRHSGRGLAVLPGAASAQLRAVDAEQALAQIDVVFPIVHGTLGEDGSLQGLLRMANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIK 131
           P+  SG+L SA++MDK  +K+V+   G+ V P     R T     +         P  +K
Sbjct: 126 PFVGSGVLGSAVAMDKDMAKRVLRDAGLEVAPFACFTRHTAAQADVQTLIAQFGLPLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  ++  +     L  +  ++H  ++L+E  + G E+ C V+G+A+   + 
Sbjct: 186 PANQGSSVGVSQVRSAEEFSAALELALRYDH--KVLVEAAIAGREIECAVLGNATPQASV 243

Query: 192 I--AVPKSDFYSYELKYSSLN-STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               V    FYSY+ KY   + +  V+PA I       +Q+ A  A+QA+ C G++R D 
Sbjct: 244 CGEVVVHDAFYSYQTKYIRDDGAATVIPADIDAHTQHRIQQCALQAYQALDCAGMARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                  ++   E+N  PG T +S++P++   +G  +R L+  ++E A
Sbjct: 304 FL-CADGRIVINEVNTLPGFTRISMYPKLWEASGLDYRSLVTRLIELA 350


>gi|71733971|ref|YP_276049.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71554524|gb|AAZ33735.1| D-alanine--D-alanine ligase A [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|320325604|gb|EFW81666.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. glycinea
           str. B076]
 gi|320327112|gb|EFW83126.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. glycinea
           str. race 4]
 gi|330879137|gb|EGH13286.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. glycinea
           str. race 4]
 gi|330989504|gb|EGH87607.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. lachrymans
           str. M301315]
          Length = 363

 Score =  317 bits (813), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 98/354 (27%), Positives = 174/354 (49%), Gaps = 57/354 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR--------SVGLVLAHLKP- 51
           +A++ GG SSE EVSL S +   +A++   + ++ I VD+            +L    P 
Sbjct: 5   VAIVFGGQSSEHEVSLQSARNVINAIDRERYTLTLIGVDKLGRWLRFDEADYLLNANDPA 64

Query: 52  ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
                                             D+ F ++HG FGEDG +Q +L +L +
Sbjct: 65  RIKLSASGKQLSLLPGSTGGQFVEVETGKPLAAIDVVFPLIHGAFGEDGALQGVLRMLAV 124

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT----MDSQHLISPPYVIKPL 133
           P+  + +LASA  MDK  +K+++   G+ V P ++++R       D+   +  P  +KP 
Sbjct: 125 PFVGADVLASAACMDKDVTKRLLRDAGIAVAPFMVLSRGETLSFADAATQLGLPMFVKPA 184

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG--DASLDVTE 191
             GSS+G+  +  +      L     ++H  +LLIEQ + G E+ C V+G  DA + V  
Sbjct: 185 NQGSSVGVSKVSDEAGFVAALALGFEFDH--KLLIEQGIVGREVECAVLGNFDAQVSVCG 242

Query: 192 IAVPKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
             +   +FY+Y+ KY + +   + +PA+ P D+  +V+ +A  A++ +GC G+SR DF  
Sbjct: 243 EVIANDEFYAYDTKYLNGDQARIAIPAEFPADLSDQVREVALQAYKVLGCAGLSRVDFFV 302

Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV----EDASCLR 300
              +R +   E+N  PG T +S++P++   +G ++ EL+  ++    E A   R
Sbjct: 303 T-DTRDIIINEVNTLPGFTSISMYPKLWQASGLTYAELIHRLIVLALERADQAR 355


>gi|238650473|ref|YP_002916325.1| D-alanine--D-alanine ligase [Rickettsia peacockii str. Rustic]
 gi|259645173|sp|C4K126|DDL_RICPU RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|238624571|gb|ACR47277.1| D-alanine--D-alanine ligase [Rickettsia peacockii str. Rustic]
          Length = 323

 Score =  317 bits (813), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 113/299 (37%), Positives = 187/299 (62%), Gaps = 5/299 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +A++ GG+S+EREVSL S +  + AL + G++V+ ID+   + + L  +KPD+ FN LHG
Sbjct: 25  IALMAGGMSAEREVSLVSSEGVSKALIELGYRVTFIDMGADIAVRLQEIKPDIVFNCLHG 84

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG +  +L ++ IPYTHSG+L+SAL+ +K+ S+    +  + +  SI+VN+     
Sbjct: 85  TYGEDGCLPGLLNIMRIPYTHSGVLSSALAFNKIHSRIWFLTNNINMAESIVVNKSDNIK 144

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD--GIELT 178
              +  PYVIKPL  GSS+G+ VI  +            + +GDQ++IEQY+   G EL 
Sbjct: 145 NDPMKRPYVIKPLAQGSSIGVEVIFAEDDFNFA---DYDFPYGDQVIIEQYIKGQGRELQ 201

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             V+   +L   EI + K+ FY YE KY+   + H+ PA +P ++Y+++   +   ++ +
Sbjct: 202 VAVLNGKALGALEIKLLKNRFYDYETKYTEGFADHLCPAPLPANLYEKLLIESEKIYKTM 261

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
            C+G +R++F+ +  + K++ LEIN  PGM P+SI PE+AAYAG +F  L+  +++ AS
Sbjct: 262 NCKGPARAEFILEEQTNKLYALEINTHPGMMPLSIVPEIAAYAGINFTNLIEEIIKTAS 320


>gi|116668041|pdb|2I80|A Chain A, Allosteric Inhibition Of Staphylococcus Aureus
           D-Alanine:d- Alanine Ligase Revealed By Crystallographic
           Studies
 gi|116668042|pdb|2I80|B Chain B, Allosteric Inhibition Of Staphylococcus Aureus
           D-Alanine:d- Alanine Ligase Revealed By Crystallographic
           Studies
          Length = 360

 Score =  317 bits (813), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 85/339 (25%), Positives = 151/339 (44%), Gaps = 46/339 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           + ++ GG S+E EVS+ + +   +A++   + V  I +         +            
Sbjct: 6   ICIVFGGKSAEHEVSILTAQNVLNAIDKDKYHVDIIYITNDGDWRKQNNITAEIKSTDEL 65

Query: 49  --------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
                                  D  F +LHG  GEDG +Q + E+L++PY  +G+L++A
Sbjct: 66  HLENGEALEISQLLKESSSGQPYDAVFPLLHGPNGEDGTIQGLFEVLDVPYVGNGVLSAA 125

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSL 139
            SMDK+  KQ+    G+P  P I   R   +             ++ P  +KP   GSS+
Sbjct: 126 SSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYEHNILKLVNDKLNYPVFVKPANLGSSV 185

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKS 197
           GI     +  +   + ++  ++   +L+IEQ V+  E+   V+G+   + T     V   
Sbjct: 186 GISKCNNEAELKEGIKEAFQFDR--KLVIEQGVNAREIEVAVLGNDYPEATWPGEVVKDV 243

Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
            FY Y+ KY        +PA +  D+   ++ +A  A +A  C G+ R+DF       ++
Sbjct: 244 AFYDYKSKYKDGKVQLQIPADLDEDVQLTLRNMALEAFKATDCSGLVRADFFVTE-DNQI 302

Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +  E N  PG T  S++P++    G S+ EL+  ++E A
Sbjct: 303 YINETNAMPGFTAFSMYPKLWENMGLSYPELITKLIELA 341


>gi|298488709|ref|ZP_07006738.1| D-alanine--D-alanine ligase [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
 gi|298156782|gb|EFH97873.1| D-alanine--D-alanine ligase [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
          Length = 363

 Score =  317 bits (812), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 98/354 (27%), Positives = 174/354 (49%), Gaps = 57/354 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR--------SVGLVLAHLKP- 51
           +A++ GG SSE EVSL S +   +A++   + ++ I VD+            +L    P 
Sbjct: 5   VAIVFGGQSSEHEVSLQSARNVINAIDRERYTLTLIGVDKLGRWLRFDEGDYLLNANDPA 64

Query: 52  ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
                                             D+ F ++HG FGEDG +Q +L +L +
Sbjct: 65  RIKLSASGKQLSLLPGSTGGQFVEVETGKPLAAIDVVFPLIHGAFGEDGALQGVLRMLAV 124

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT----MDSQHLISPPYVIKPL 133
           P+  + +LASA  MDK  +K+++   G+ V P ++++R       D+   +  P  +KP 
Sbjct: 125 PFVGADVLASAACMDKDVTKRLLRDAGIAVAPFMVLSRAETLSFADAATQLGLPMFVKPA 184

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG--DASLDVTE 191
             GSS+G+  +  +      L     ++H  +LLIEQ + G E+ C V+G  DA + V  
Sbjct: 185 NQGSSVGVSKVSDEAGFVAALALGFEFDH--KLLIEQGIVGREVECAVLGNFDAQVSVCG 242

Query: 192 IAVPKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
             +   +FY+Y+ KY + +   + +PA+ P D+  +V+ +A  A++ +GC G+SR DF  
Sbjct: 243 EVIANDEFYAYDTKYLNGDQARIAIPAEFPADLSDQVREVALQAYKVLGCAGLSRVDFFV 302

Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV----EDASCLR 300
              +R +   E+N  PG T +S++P++   +G ++ EL+  ++    E A   R
Sbjct: 303 T-DTRDIIINEVNTLPGFTSISMYPKLWQASGLTYAELIHRLIVLALERADQAR 355


>gi|254967088|gb|ACT97586.1| D-alanyl-alanine synthetase A [mixed culture bacterium
           CY_gF1DD01_14]
 gi|281177552|dbj|BAI53882.1| D-alanine-D-alanine ligase [Escherichia coli SE15]
          Length = 364

 Score =  317 bits (812), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 90/348 (25%), Positives = 166/348 (47%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP- 51
           + ++ GG S+E EVSL S K    A++ + F V  + +D+            +L    P 
Sbjct: 6   VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPA 65

Query: 52  ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
                                             D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  HIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLISPPYVIK 131
           P+  S +LASA  MDK  +K+++   G+ + P I + R         + +  +  P  +K
Sbjct: 126 PFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  +  ++   + +  +  ++H  ++++EQ + G E+ C V+G+ +   + 
Sbjct: 186 PANQGSSVGVSKVTSEEQYTIAVDLAFEFDH--KVIVEQGIKGREIECAVLGNNNPQAST 243

Query: 192 IA--VPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               V  SDFY+Y+ KY     +  V+PA I  +I  +++ +A  A+Q +GC G++R D 
Sbjct: 244 CGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              P   +V   EIN  PG T +S++P++   +G  + +L+  ++E A
Sbjct: 304 FLTP-ENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350


>gi|258422916|ref|ZP_05685816.1| D-alanyl-alanine synthetase A [Staphylococcus aureus A9635]
 gi|257846940|gb|EEV70954.1| D-alanyl-alanine synthetase A [Staphylococcus aureus A9635]
          Length = 356

 Score =  317 bits (812), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 85/339 (25%), Positives = 151/339 (44%), Gaps = 46/339 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           + ++ GG S+E EVS+ + +   +A++   + V  I +         +            
Sbjct: 6   ICIVFGGKSAEHEVSILTAQNVLNAIDKDKYHVDIIYITNDGDWRKQNNITTEIKSTDEL 65

Query: 49  --------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
                                  D  F +LHG  GEDG +Q + E+L++PY  +G+L++A
Sbjct: 66  HLENGEALEISQLLKEGSSGQPYDAVFPLLHGPNGEDGTIQGLFEVLDVPYVGNGVLSAA 125

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSL 139
            SMDK+  KQ+    G+P  P I   R   +             ++ P  +KP   GSS+
Sbjct: 126 SSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYEHNILKLVNDKLNYPVFVKPANLGSSV 185

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKS 197
           GI     +  +   + ++  ++   +L+IEQ V+  E+   V+G+   + T     V   
Sbjct: 186 GISKCNNEAELKEGIKEAFQFDR--KLVIEQGVNAREIEVAVLGNDYPEATWPGEVVKDV 243

Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
            FY Y+ KY        +PA +  D+   ++ +A  A +A  C G+ R+DF       ++
Sbjct: 244 AFYDYKSKYKDGKVQLQIPADLDEDVQLTLRNMALEAFKATDCSGLVRADFFVTE-DNQI 302

Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +  E N  PG T  S++P++    G S+ EL+  ++E A
Sbjct: 303 YINETNAMPGFTAFSMYPKLWENMGLSYPELITKLIELA 341


>gi|82542872|ref|YP_406819.1| D-alanyl-alanine synthetase A [Shigella boydii Sb227]
 gi|81244283|gb|ABB64991.1| D-alanine-D-alanine ligase A [Shigella boydii Sb227]
 gi|320187588|gb|EFW62271.1| D-alanine--D-alanine ligase [Shigella flexneri CDC 796-83]
 gi|332098498|gb|EGJ03464.1| D-alanine--D-alanine ligase [Shigella boydii 3594-74]
          Length = 364

 Score =  317 bits (812), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 90/348 (25%), Positives = 166/348 (47%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP- 51
           + ++ GG S+E EVSL S K    A++ + F V  + +D+            +L    P 
Sbjct: 6   VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPA 65

Query: 52  ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
                                             D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  HIALRPSATSLAQVPSKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLISPPYVIK 131
           P+  S +LASA  MDK  +K+++   G+ + P I + R         + +  +  P  +K
Sbjct: 126 PFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLRLPLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  +  ++   + +  +  ++H  ++++EQ + G E+ C V+G+ +   + 
Sbjct: 186 PANQGSSVGVSKVTSEEQYAIAVDLAFEFDH--KVIVEQGIKGREIECAVLGNDNPQAST 243

Query: 192 IA--VPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               V  SDFY+Y+ KY     +  V+PA I  +I  +++ +A  A+Q +GC G++R D 
Sbjct: 244 CGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              P   +V   EIN  PG T +S++P++   +G  + +L+  ++E A
Sbjct: 304 FLTP-ENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350


>gi|257426222|ref|ZP_05602637.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257428880|ref|ZP_05605274.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257431489|ref|ZP_05607862.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257434199|ref|ZP_05610549.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257437112|ref|ZP_05613152.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus
           M876]
 gi|282911649|ref|ZP_06319448.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282914929|ref|ZP_06322709.1| D-alanine--D-alanine ligase [Staphylococcus aureus subsp. aureus
           M899]
 gi|282920260|ref|ZP_06327984.1| D-alanine-D-alanine ligase [Staphylococcus aureus subsp. aureus
           C427]
 gi|282925471|ref|ZP_06333125.1| D-alanine-D-alanine ligase [Staphylococcus aureus subsp. aureus
           C101]
 gi|293509001|ref|ZP_06667788.1| D-alanine-D-alanine ligase [Staphylococcus aureus subsp. aureus
           58-424]
 gi|293510913|ref|ZP_06669612.1| D-alanine-D-alanine ligase [Staphylococcus aureus subsp. aureus
           M809]
 gi|293547515|ref|ZP_06672190.1| D-alanine- D-alanine ligase [Staphylococcus aureus subsp. aureus
           M1015]
 gi|257270927|gb|EEV03100.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257274222|gb|EEV05739.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257277730|gb|EEV08400.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257280838|gb|EEV10983.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257283505|gb|EEV13632.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus
           M876]
 gi|282312872|gb|EFB43273.1| D-alanine-D-alanine ligase [Staphylococcus aureus subsp. aureus
           C101]
 gi|282316120|gb|EFB46501.1| D-alanine-D-alanine ligase [Staphylococcus aureus subsp. aureus
           C427]
 gi|282321132|gb|EFB51463.1| D-alanine--D-alanine ligase [Staphylococcus aureus subsp. aureus
           M899]
 gi|282324414|gb|EFB54727.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|290919635|gb|EFD96708.1| D-alanine- D-alanine ligase [Staphylococcus aureus subsp. aureus
           M1015]
 gi|291094705|gb|EFE24977.1| D-alanine-D-alanine ligase [Staphylococcus aureus subsp. aureus
           58-424]
 gi|291466198|gb|EFF08725.1| D-alanine-D-alanine ligase [Staphylococcus aureus subsp. aureus
           M809]
          Length = 356

 Score =  317 bits (812), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 85/339 (25%), Positives = 151/339 (44%), Gaps = 46/339 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           + ++ GG S+E EVS+ + +   +A++   + V  I +         +            
Sbjct: 6   ICIVFGGKSAEHEVSILTAQNVLNAIDKDKYHVDIIYITNDGDWRKQNNITTEIKSTDEL 65

Query: 49  --------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
                                  D  F +LHG  GEDG +Q + E+L++PY  +G+L++A
Sbjct: 66  HLENGEALEISQLLKESSSGQPYDAVFPLLHGPNGEDGTIQGLFEVLDVPYVGNGVLSAA 125

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSL 139
            SMDK+  KQ+    G+P  P I   R   +             ++ P  +KP   GSS+
Sbjct: 126 SSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYEHNILKLVNDKLNYPVFVKPANLGSSI 185

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKS 197
           GI     +  +   + ++  ++   +L+IEQ V+  E+   V+G+   + T     V   
Sbjct: 186 GISKCSNEAELKEGIKEAFQFDR--KLVIEQGVNAREIEVAVLGNDYPEATWPGEVVKDV 243

Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
            FY Y+ KY        +PA +  D+   ++ +A  A +A  C G+ R+DF       ++
Sbjct: 244 AFYDYKSKYKDGKVQLQIPADLDEDVQLTLRNMALEAFKATDCSGLVRADFFVTE-DNQI 302

Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +  E N  PG T  S++P++    G S+ EL+  ++E A
Sbjct: 303 YINETNAMPGFTAFSMYPKLWENMGLSYPELITKLIELA 341


>gi|188989640|ref|YP_001901650.1| D-alanyl-alanine synthetase A [Xanthomonas campestris pv.
           campestris str. B100]
 gi|167731400|emb|CAP49575.1| D-alanine-D-alanine ligase A [Xanthomonas campestris pv.
           campestris]
          Length = 368

 Score =  317 bits (812), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 91/348 (26%), Positives = 158/348 (45%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           + ++ GG S+E EVSL S +    AL+   F+   I +D+     L+             
Sbjct: 6   VGLIFGGKSAEHEVSLQSARNILQALDPQRFEPVLIGIDKQGQWHLSAPESFLLDADDPS 65

Query: 49  -------------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEI 77
                                           + D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  RIALRHSGRGLAVLPGAASAQLRAVDAEQALAQIDVVFPIVHGTLGEDGSLQGLLRMANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIK 131
           P+  SG+L SA++MDK  +K+V+   G+ V P     R T     +         P  +K
Sbjct: 126 PFVGSGVLGSAVAMDKDMAKRVLRDAGLEVAPFACFTRHTAAQADVQTLIAQFGLPLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  ++  +     L  +  ++H  ++L+E  + G E+ C V+G+A+   + 
Sbjct: 186 PANQGSSVGVSQVRSAEEFSAALELALRYDH--KVLVEAAIAGREIECAVLGNATPQASV 243

Query: 192 I--AVPKSDFYSYELKYSSLN-STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               V    FYSYE KY   + +  V+PA I       +Q+ A  A+QA+ C G++R D 
Sbjct: 244 CGEVVVHDAFYSYETKYIRDDGAATVIPADIDAHTQHRIQQCALQAYQALDCAGMARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                  ++   E+N  PG T +S++P++   +G  +R L+  ++E A
Sbjct: 304 FL-CADGRIVINEVNTLPGFTRISMYPKLWEASGLDYRSLVTRLIELA 350


>gi|294497054|ref|YP_003560754.1| D-alanine--D-alanine ligase [Bacillus megaterium QM B1551]
 gi|295702419|ref|YP_003595494.1| D-alanine--D-alanine ligase [Bacillus megaterium DSM 319]
 gi|294346991|gb|ADE67320.1| D-alanine--D-alanine ligase [Bacillus megaterium QM B1551]
 gi|294800078|gb|ADF37144.1| D-alanine--D-alanine ligase [Bacillus megaterium DSM 319]
          Length = 360

 Score =  317 bits (812), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 93/345 (26%), Positives = 158/345 (45%), Gaps = 52/345 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           + +L GG S+E +VSL +  A + A+    ++V  I +  +   +               
Sbjct: 5   LGLLYGGKSAEHKVSLQTALAVSKAINHDKYEVHPIYITETGKWIRGTQLTGPLETVAQL 64

Query: 47  -------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81
                                       + D+ F +LHG  GEDG VQ +LELL IPY  
Sbjct: 65  EIQDNGTAISPVSLNTEMFALTDSKTDDQLDVIFPLLHGPNGEDGTVQGLLELLNIPYVG 124

Query: 82  SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ--------HLISPPYVIKPL 133
           +G+LASA  MDK+  KQ+ +  G+P    +   R   ++           +  P  +KP 
Sbjct: 125 NGVLASAAGMDKVVMKQLFAQAGLPQVEYVSFIRREWEADRTAAYEKVETLGYPCFVKPA 184

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA--SLDVTE 191
             GSS+GI      + +    +++  ++   ++++E    G E+  GV+G+   +  V  
Sbjct: 185 NLGSSVGISKCDNREELEAAFVEAFLFDR--KIIVEAAAVGREVEIGVLGNDEAACSVVG 242

Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
             +PK  FY Y+ KY   ++  ++PA+I  + ++E+  LA  A +AI   G+ R+DF   
Sbjct: 243 EILPKKAFYDYKAKYEDGDTGLIIPAEITEEQHQEMSALAIKAFKAIDGSGLVRADFFLT 302

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
               K    E+N  PG TP S+FP +  +AG  + +L+  +V  A
Sbjct: 303 -SEGKFIINEVNTMPGFTPFSMFPLLWKHAGVEYPDLIEKLVSLA 346


>gi|289624931|ref|ZP_06457885.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. aesculi
           str. NCPPB3681]
 gi|289650492|ref|ZP_06481835.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. aesculi
           str. 2250]
 gi|330867221|gb|EGH01930.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. aesculi
           str. 0893_23]
          Length = 363

 Score =  317 bits (812), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 98/354 (27%), Positives = 174/354 (49%), Gaps = 57/354 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR--------SVGLVLAHLKP- 51
           +A++ GG SSE EVSL S +   +A++   + ++ I VD+            +L    P 
Sbjct: 5   VAIVFGGQSSEHEVSLQSARNVINAIDRERYTLTLIGVDKLGRWLRFDEADYLLNANDPA 64

Query: 52  ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
                                             D+ F ++HG FGEDG +Q +L +L +
Sbjct: 65  RIKLSASGKQLSLLPGSTGGQFVEVETGKPLAAIDVVFPLIHGAFGEDGALQGVLRMLAV 124

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT----MDSQHLISPPYVIKPL 133
           P+  + +LASA  MDK  +K+++   G+ V P ++++R       D+   +  P  +KP 
Sbjct: 125 PFVGADVLASAACMDKDVTKRLLRDAGIAVAPFMVLSRAETLSFADAATQLGLPMFVKPA 184

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG--DASLDVTE 191
             GSS+G+  +  +      L     ++H  +LLIEQ + G E+ C V+G  DA + V  
Sbjct: 185 NQGSSVGVSKVSDEAGFVAALALGFEFDH--KLLIEQGIVGREVECAVLGNFDAQVSVCG 242

Query: 192 IAVPKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
             +   +FY+Y+ KY + +   + +PA+ P D+  +V+ +A  A++ +GC G+SR DF  
Sbjct: 243 EVIANDEFYAYDTKYLNGDQARIAIPAEFPADLSDQVREVALQAYKVLGCAGLSRVDFFV 302

Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV----EDASCLR 300
              +R +   E+N  PG T +S++P++   +G ++ EL+  ++    E A   R
Sbjct: 303 T-DTRDIIINEVNTLPGFTSISMYPKLWQASGLTYAELIHRLIVLALERADQAR 355


>gi|253731080|ref|ZP_04865245.1| D-alanine--D-alanine ligase [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253733083|ref|ZP_04867248.1| D-alanine--D-alanine ligase [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|304379264|ref|ZP_07362003.1| D-alanine-D-alanine ligase [Staphylococcus aureus subsp. aureus
           ATCC BAA-39]
 gi|253725207|gb|EES93936.1| D-alanine--D-alanine ligase [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253728991|gb|EES97720.1| D-alanine--D-alanine ligase [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|304342123|gb|EFM08023.1| D-alanine-D-alanine ligase [Staphylococcus aureus subsp. aureus
           ATCC BAA-39]
 gi|320140746|gb|EFW32598.1| D-ala D-ala ligase [Staphylococcus aureus subsp. aureus MRSA131]
 gi|320143721|gb|EFW35498.1| D-ala D-ala ligase [Staphylococcus aureus subsp. aureus MRSA177]
          Length = 393

 Score =  317 bits (812), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 85/339 (25%), Positives = 151/339 (44%), Gaps = 46/339 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           + ++ GG S+E EVS+ + +   +A++   + V  I +         +            
Sbjct: 43  ICIVFGGKSAEHEVSILTAQNVLNAIDKDKYHVDIIYITNDGDWRKQNNITAEIKSTDEL 102

Query: 49  --------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
                                  D  F +LHG  GEDG +Q + E+L++PY  +G+L++A
Sbjct: 103 HLENGEALEISQLLKESSSGQPYDAVFPLLHGPNGEDGTIQGLFEVLDVPYVGNGVLSAA 162

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSL 139
            SMDK+  KQ+    G+P  P I   R   +             ++ P  +KP   GSS+
Sbjct: 163 SSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYEHNILKLVNDKLNYPVFVKPANLGSSV 222

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKS 197
           GI     +  +   + ++  ++   +L+IEQ V+  E+   V+G+   + T     V   
Sbjct: 223 GISKCNNEAELKEGIKEAFQFDR--KLVIEQGVNAREIEVAVLGNDYPEATWPGEVVKDV 280

Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
            FY Y+ KY        +PA +  D+   ++ +A  A +A  C G+ R+DF       ++
Sbjct: 281 AFYDYKSKYKDGKVQLQIPADLDEDVQLTLRNMALEAFKATDCSGLVRADFFVTE-DNQI 339

Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +  E N  PG T  S++P++    G S+ EL+  ++E A
Sbjct: 340 YINETNAMPGFTAFSMYPKLWENMGLSYPELITKLIELA 378


>gi|116668048|pdb|2I87|A Chain A, Allosteric Inhibition Of Staphylococcus Aureus
           D-Alanine:d- Alanine Ligase Revealed By Crystallographic
           Studies
 gi|116668049|pdb|2I87|B Chain B, Allosteric Inhibition Of Staphylococcus Aureus
           D-Alanine:d- Alanine Ligase Revealed By Crystallographic
           Studies
 gi|116668051|pdb|2I8C|A Chain A, Allosteric Inhibition Of Staphylococcus Aureus
           D-Alanine:d- Alanine Ligase Revealed By Crystallographic
           Studies
 gi|116668052|pdb|2I8C|B Chain B, Allosteric Inhibition Of Staphylococcus Aureus
           D-Alanine:d- Alanine Ligase Revealed By Crystallographic
           Studies
          Length = 364

 Score =  317 bits (812), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 85/339 (25%), Positives = 151/339 (44%), Gaps = 46/339 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           + ++ GG S+E EVS+ + +   +A++   + V  I +         +            
Sbjct: 6   ICIVFGGKSAEHEVSILTAQNVLNAIDKDKYHVDIIYITNDGDWRKQNNITAEIKSTDEL 65

Query: 49  --------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
                                  D  F +LHG  GEDG +Q + E+L++PY  +G+L++A
Sbjct: 66  HLENGEALEISQLLKESSSGQPYDAVFPLLHGPNGEDGTIQGLFEVLDVPYVGNGVLSAA 125

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSL 139
            SMDK+  KQ+    G+P  P I   R   +             ++ P  +KP   GSS+
Sbjct: 126 SSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYEHNILKLVNDKLNYPVFVKPANLGSSV 185

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKS 197
           GI     +  +   + ++  ++   +L+IEQ V+  E+   V+G+   + T     V   
Sbjct: 186 GISKCNNEAELKEGIKEAFQFDR--KLVIEQGVNAREIEVAVLGNDYPEATWPGEVVKDV 243

Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
            FY Y+ KY        +PA +  D+   ++ +A  A +A  C G+ R+DF       ++
Sbjct: 244 AFYDYKSKYKDGKVQLQIPADLDEDVQLTLRNMALEAFKATDCSGLVRADFFVTE-DNQI 302

Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +  E N  PG T  S++P++    G S+ EL+  ++E A
Sbjct: 303 YINETNAMPGFTAFSMYPKLWENMGLSYPELITKLIELA 341


>gi|78065123|ref|YP_367892.1| D-alanine--D-alanine ligase [Burkholderia sp. 383]
 gi|77965868|gb|ABB07248.1| D-alanine--D-alanine ligase [Burkholderia sp. 383]
          Length = 313

 Score =  317 bits (812), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 106/300 (35%), Positives = 155/300 (51%), Gaps = 11/300 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG SSEREVSL+SGK     L DAG      D        L       AFN LHG
Sbjct: 12  VAVLFGGESSEREVSLTSGKLVLQGLRDAGIDAHPFDPAERPLAALKDEGFVRAFNALHG 71

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118
            +GE+G +Q  L+   I YT SG+L SAL +DK R+K V    GVP  P   V R     
Sbjct: 72  GYGENGQIQGALDFYGIRYTGSGVLGSALGLDKFRTKLVWQQTGVPTPPFETVLRGDDLA 131

Query: 119 ----DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD- 173
               D    +  P  +KP   GSS+ ++ +K      L    + +  H   +++E+ ++ 
Sbjct: 132 ARATDIVAKLGLPLFVKPASEGSSVAVLKVKTA--DALPAALAEAATHDPIVIVEKSIEG 189

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           G E T  + GD  L V +I VP  +FY Y  KY + ++ +++P  +P D   E++R+A  
Sbjct: 190 GGEYTACIAGDLDLPVIKI-VPAGEFYDYHAKYIADDTQYLIPCGLPADKEAELKRVARR 248

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           A   +GC    R+DF+ D      ++LE+N  PGMT  S+ P+ A   G S+ EL++ ++
Sbjct: 249 AFDVLGCTDWGRADFMLDADGNA-YFLEVNTAPGMTDHSLPPKAARAVGISYSELVVKVL 307


>gi|282917432|ref|ZP_06325185.1| D-alanine-D-alanine ligase [Staphylococcus aureus subsp. aureus
           D139]
 gi|283771252|ref|ZP_06344141.1| D-alanine-D-alanine ligase [Staphylococcus aureus subsp. aureus
           H19]
 gi|282318634|gb|EFB48991.1| D-alanine-D-alanine ligase [Staphylococcus aureus subsp. aureus
           D139]
 gi|283459457|gb|EFC06550.1| D-alanine-D-alanine ligase [Staphylococcus aureus subsp. aureus
           H19]
          Length = 356

 Score =  317 bits (812), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 84/339 (24%), Positives = 151/339 (44%), Gaps = 46/339 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           + ++ GG S+E EVS+ + +   +A++   + V  I +         +            
Sbjct: 6   ICIVFGGKSAEHEVSILTAQNVLNAIDKDKYHVDIIYITNDGDWRKQNNITTEIKSTDEL 65

Query: 49  --------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
                                  D  F +LHG  GEDG +Q + E+L++PY  +G+L++A
Sbjct: 66  HLENGEALEISQLLKESSSGQPYDAVFPLLHGPNGEDGTIQGLFEVLDVPYVGNGVLSAA 125

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSL 139
            SMDK+  KQ+    G+P  P I   R   +             ++ P  +KP   GSS+
Sbjct: 126 SSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYEHNILKLVNDKLNYPVFVKPANLGSSV 185

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKS 197
           GI     +  +   + ++  ++   +L+IEQ V+  E+   V+G+   + T     V   
Sbjct: 186 GISKCNNEAELKEGIKEAFQFDR--KLVIEQGVNAREIEVAVLGNDYPEATWPGEVVKDV 243

Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
            FY Y+ KY        +PA +  ++   ++ +A  A +A  C G+ R+DF       ++
Sbjct: 244 AFYDYKSKYKDGKVQLQIPADLDEEVQLTLRNMALEAFKATDCSGLVRADFFVTE-DNQI 302

Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +  E N  PG T  S++P++    G S+ EL+  ++E A
Sbjct: 303 YINETNAMPGFTAFSMYPKLWENMGLSYPELITKLIELA 341


>gi|206561797|ref|YP_002232562.1| D-alanine--D-alanine ligase [Burkholderia cenocepacia J2315]
 gi|229463735|sp|B4E6J0|DDL_BURCJ RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|198037839|emb|CAR53783.1| D-alanine--D-alanine ligase B [Burkholderia cenocepacia J2315]
          Length = 313

 Score =  317 bits (812), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 102/300 (34%), Positives = 155/300 (51%), Gaps = 11/300 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL+SG+     L DAG      D        L       AFN LHG
Sbjct: 12  VAVLFGGESAEREVSLTSGRLVLQGLRDAGVDAHPFDPAERPLSALKDEGFVRAFNALHG 71

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118
            +GE+G +Q  L+   I YT SG+L SAL +DK R+K V    GVP  P   V R     
Sbjct: 72  GYGENGQIQGALDFYGIRYTGSGVLGSALGLDKFRTKLVWQQTGVPTPPFETVMRGDDLA 131

Query: 119 ----DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD- 173
               D    +  P  +KP   GSS+ ++ +K   ++P       +  H   +++E+ ++ 
Sbjct: 132 ARATDIVAKLGLPLFVKPASEGSSVAVLKVKTADALPA--ALEEAATHDKIVIVEKSIEG 189

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           G E T  + GD  L + +I VP  +FY Y  KY + ++ +++P  +P     E++R+A  
Sbjct: 190 GGEYTACIAGDLDLPLIKI-VPAGEFYDYHAKYVADDTQYLIPCGLPAQQEAELKRIARR 248

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           A   +GC    R+DF+ D      ++LE+N  PGMT  S+ P+ A   G S+ EL++ ++
Sbjct: 249 AFDVLGCTDWGRADFMLDAAGNA-YFLEVNTAPGMTDHSLPPKAARAVGISYSELVVKVL 307


>gi|26246382|ref|NP_752421.1| D-alanyl-alanine synthetase A [Escherichia coli CFT073]
 gi|91209444|ref|YP_539430.1| D-alanyl-alanine synthetase A [Escherichia coli UTI89]
 gi|110640642|ref|YP_668370.1| D-alanyl-alanine synthetase A [Escherichia coli 536]
 gi|117622644|ref|YP_851557.1| D-alanyl-alanine synthetase A [Escherichia coli APEC O1]
 gi|191173486|ref|ZP_03035013.1| D-alanine--D-alanine ligase A [Escherichia coli F11]
 gi|218557291|ref|YP_002390204.1| D-alanyl-alanine synthetase A [Escherichia coli S88]
 gi|227884616|ref|ZP_04002421.1| D-alanyl-alanine synthetase A [Escherichia coli 83972]
 gi|237707631|ref|ZP_04538112.1| D-alanyl-alanine synthetase A [Escherichia sp. 3_2_53FAA]
 gi|300988123|ref|ZP_07178560.1| D-ala D-ala ligase [Escherichia coli MS 45-1]
 gi|300997436|ref|ZP_07181776.1| D-ala D-ala ligase [Escherichia coli MS 200-1]
 gi|301049572|ref|ZP_07196526.1| D-ala D-ala ligase [Escherichia coli MS 185-1]
 gi|306813154|ref|ZP_07447347.1| D-alanyl-alanine synthetase A [Escherichia coli NC101]
 gi|331645551|ref|ZP_08346655.1| D-alanine--D-alanine ligase A (D-alanylalanine synthetaseA)
           (D-Ala-D-Ala ligase A) [Escherichia coli M605]
 gi|331656432|ref|ZP_08357394.1| D-alanine--D-alanine ligase A (D-alanylalanine synthetaseA)
           (D-Ala-D-Ala ligase A) [Escherichia coli TA206]
 gi|29336710|sp|Q8FKE3|DDLA_ECOL6 RecName: Full=D-alanine--D-alanine ligase A; AltName:
           Full=D-Ala-D-Ala ligase A; AltName: Full=D-alanylalanine
           synthetase A
 gi|26106780|gb|AAN78965.1|AE016756_148 D-alanine--D-alanine ligase A [Escherichia coli CFT073]
 gi|91071018|gb|ABE05899.1| D-alanine--D-alanine ligase A [Escherichia coli UTI89]
 gi|110342234|gb|ABG68471.1| D-alanine-D-alanine ligase A [Escherichia coli 536]
 gi|115511768|gb|ABI99842.1| D-alanine-D-alanine ligase A [Escherichia coli APEC O1]
 gi|190906195|gb|EDV65807.1| D-alanine--D-alanine ligase A [Escherichia coli F11]
 gi|218364060|emb|CAR01725.1| D-alanine-D-alanine ligase A [Escherichia coli S88]
 gi|222032177|emb|CAP74916.1| D-alanine--D-alanine ligase A [Escherichia coli LF82]
 gi|226898841|gb|EEH85100.1| D-alanyl-alanine synthetase A [Escherichia sp. 3_2_53FAA]
 gi|227838702|gb|EEJ49168.1| D-alanyl-alanine synthetase A [Escherichia coli 83972]
 gi|294492292|gb|ADE91048.1| D-alanine--D-alanine ligase A [Escherichia coli IHE3034]
 gi|300298663|gb|EFJ55048.1| D-ala D-ala ligase [Escherichia coli MS 185-1]
 gi|300304255|gb|EFJ58775.1| D-ala D-ala ligase [Escherichia coli MS 200-1]
 gi|300407537|gb|EFJ91075.1| D-ala D-ala ligase [Escherichia coli MS 45-1]
 gi|305853917|gb|EFM54356.1| D-alanyl-alanine synthetase A [Escherichia coli NC101]
 gi|307552286|gb|ADN45061.1| D-alanine--D-alanine ligase A [Escherichia coli ABU 83972]
 gi|307628153|gb|ADN72457.1| D-alanyl-alanine synthetase A [Escherichia coli UM146]
 gi|312944958|gb|ADR25785.1| D-alanyl-alanine synthetase A [Escherichia coli O83:H1 str. NRG
           857C]
 gi|315289818|gb|EFU49208.1| D-ala D-ala ligase [Escherichia coli MS 110-3]
 gi|315294151|gb|EFU53502.1| D-ala D-ala ligase [Escherichia coli MS 153-1]
 gi|315299609|gb|EFU58857.1| D-ala D-ala ligase [Escherichia coli MS 16-3]
 gi|320197185|gb|EFW71802.1| D-alanine--D-alanine ligase [Escherichia coli WV_060327]
 gi|323191488|gb|EFZ76750.1| D-alanine--D-alanine ligase [Escherichia coli RN587/1]
 gi|323953007|gb|EGB48875.1| D-alanine-D-alanine ligase [Escherichia coli H252]
 gi|323958573|gb|EGB54276.1| D-alanine-D-alanine ligase [Escherichia coli H263]
 gi|324010139|gb|EGB79358.1| D-ala D-ala ligase [Escherichia coli MS 57-2]
 gi|324010730|gb|EGB79949.1| D-ala D-ala ligase [Escherichia coli MS 60-1]
 gi|330910172|gb|EGH38682.1| D-alanine--D-alanine ligase [Escherichia coli AA86]
 gi|331045713|gb|EGI17839.1| D-alanine--D-alanine ligase A (D-alanylalanine synthetaseA)
           (D-Ala-D-Ala ligase A) [Escherichia coli M605]
 gi|331054680|gb|EGI26689.1| D-alanine--D-alanine ligase A (D-alanylalanine synthetaseA)
           (D-Ala-D-Ala ligase A) [Escherichia coli TA206]
          Length = 364

 Score =  317 bits (812), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 90/348 (25%), Positives = 166/348 (47%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP- 51
           + ++ GG S+E EVSL S K    A++ + F V  + +D+            +L    P 
Sbjct: 6   VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPA 65

Query: 52  ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
                                             D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  HIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLISPPYVIK 131
           P+  S +LASA  MDK  +K+++   G+ + P I + R         + +  +  P  +K
Sbjct: 126 PFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  +  ++   + +  +  ++H  ++++EQ + G E+ C V+G+ +   + 
Sbjct: 186 PANQGSSVGVSKVTSEEQYTIAVDLAFEFDH--KVIVEQGIKGREIECAVLGNDNPQAST 243

Query: 192 IA--VPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               V  SDFY+Y+ KY     +  V+PA I  +I  +++ +A  A+Q +GC G++R D 
Sbjct: 244 CGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              P   +V   EIN  PG T +S++P++   +G  + +L+  ++E A
Sbjct: 304 FLTP-ENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350


>gi|315604701|ref|ZP_07879764.1| D-alanine-D-alanine ligase [Actinomyces sp. oral taxon 180 str.
           F0310]
 gi|315313713|gb|EFU61767.1| D-alanine-D-alanine ligase [Actinomyces sp. oral taxon 180 str.
           F0310]
          Length = 378

 Score =  317 bits (812), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 95/365 (26%), Positives = 165/365 (45%), Gaps = 70/365 (19%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQI-------------------------- 36
           ++ GG SSE EVS ++     +A++   + V  +                          
Sbjct: 11  IVFGGRSSEHEVSCATAAGILTAIDRTKWDVIPLGITRDGQWVRVADDPSALAFRDGKGQ 70

Query: 37  -------------------------DVDRSVGLVL---AHLKPDLAFNVLHGNFGEDGLV 68
                                    D D +   V+        D+ F +LHG +GEDG +
Sbjct: 71  SVTAGATRVALTPGEGNLVELSYDGDPDSAASRVIGVEDLGHVDIVFPLLHGPYGEDGTI 130

Query: 69  QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ------- 121
           Q + E+  + Y   G+ +SA+SMDK  +K V+++ G+ V    LV     +S        
Sbjct: 131 QGLFEMAGVRYVGCGVTSSAISMDKHLTKTVLAAAGIDVGRWELVTARQWESDPGACVER 190

Query: 122 -HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P  +KP + GSS+GI  +   + +P  + +++  NH  ++++E  V G E+ CG
Sbjct: 191 IERLGFPVFVKPCRAGSSVGISRVTSREDLPTAIKEAA--NHDPRVIVEASVSGREIECG 248

Query: 181 VMGD------ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
           V+G        +  + EI VP+ +FY Y+ KY         PA++     + ++  A+ A
Sbjct: 249 VLGARPDWSSGTAPLGEIVVPEGEFYDYDHKYVDDVVGLSCPAEVSAAYAQRIRETAWRA 308

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             A+ C G++R DF  D  +  V   E+N  PG TP+S++P+M A AG ++ +LL  ++ 
Sbjct: 309 FDALECEGLARVDFFLDEATDTVIINEVNTMPGFTPISMYPQMWAAAGLNYSDLLSELLT 368

Query: 295 DASCL 299
           +AS  
Sbjct: 369 EASTR 373


>gi|188590367|ref|YP_001922200.1| D-alanine--D-alanine ligase [Clostridium botulinum E3 str. Alaska
           E43]
 gi|229463742|sp|B2UY33|DDL_CLOBA RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|188500648|gb|ACD53784.1| D-alanine--D-alanine ligase [Clostridium botulinum E3 str. Alaska
           E43]
          Length = 301

 Score =  317 bits (812), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 100/299 (33%), Positives = 171/299 (57%), Gaps = 8/299 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGGISSERE+SL SGK+   ++    ++V  I +D    ++      D A   LHG
Sbjct: 3   VGVIMGGISSEREISLKSGKSIVDSINKNKYEVVSIVIDEKEDIINKVKGIDFALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118
            FGEDG VQ++L+ L IPY+  G L+S++ MDK  SK ++ +  +   P I + +     
Sbjct: 63  QFGEDGTVQSVLQTLGIPYSGCGPLSSSMCMDKDISKCILKAANIRTAPWINLRKNDAIN 122

Query: 119 -DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            +    +  P V+KP  GGSS+   +IK+++ I   +++   W    +++IE+++ G E+
Sbjct: 123 YEEIEKMGYPVVVKPTHGGSSVATFIIKEEKDIKDAVIEGFKW--DSEVIIEKFIKGDEI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC V GD  L V  I  PK++F+ +  KY+   S   +  ++P  +++EV+++A   ++A
Sbjct: 181 TCPVFGDKMLPVVAIK-PKAEFFDFTAKYADGGSDEFV-TELPKKLHEEVEKMALATYKA 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           + C   SR D +     +  + LE+N  PGMTP S+ P+ AA    SF EL+  +++++
Sbjct: 239 LKCEVYSRVDMIVTE-DKVPYILEVNTLPGMTPNSLIPKSAAGVNISFPELIDMIIDES 296


>gi|331671933|ref|ZP_08372729.1| D-alanine--D-alanine ligase A (D-alanylalanine synthetaseA)
           (D-Ala-D-Ala ligase A) [Escherichia coli TA280]
 gi|331070922|gb|EGI42281.1| D-alanine--D-alanine ligase A (D-alanylalanine synthetaseA)
           (D-Ala-D-Ala ligase A) [Escherichia coli TA280]
          Length = 364

 Score =  317 bits (812), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 90/348 (25%), Positives = 165/348 (47%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP- 51
           + ++ GG S+E EVSL S K    A++ + F V  + +D+            +L    P 
Sbjct: 6   VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPA 65

Query: 52  ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
                                             D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  HIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLISPPYVIK 131
           P+  S +LASA  MDK  +K+++   G+ + P I + R         + +  +  P  +K
Sbjct: 126 PFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  +  ++   + +  +  ++H  ++++EQ + G E+ C V+G+ +   + 
Sbjct: 186 PANQGSSVGVSKVTSEEQYAIAVDLAFEFDH--KVIVEQGIKGREIECAVLGNDNPQAST 243

Query: 192 IA--VPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               V  SDFY+Y+ KY     +  V+PA I  +I  +++ +A  A+Q +GC G++R D 
Sbjct: 244 CGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              P    V   EIN  PG T +S++P++   +G  + +L+  ++E A
Sbjct: 304 FLTP-ENDVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350


>gi|329924576|ref|ZP_08279621.1| D-ala D-ala ligase N-terminal domain protein [Paenibacillus sp.
           HGF5]
 gi|328940586|gb|EGG36907.1| D-ala D-ala ligase N-terminal domain protein [Paenibacillus sp.
           HGF5]
          Length = 364

 Score =  317 bits (812), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 94/341 (27%), Positives = 156/341 (45%), Gaps = 49/341 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           + ++ GG S E EVSLS+  A  +A +   +++    + +     +              
Sbjct: 8   VGLVYGGKSGEHEVSLSTAFAVMNAFDFDKYEMVPFYISKQGTWRIGSKMSAPFARQEEL 67

Query: 47  ----------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84
                                  +   D+ F +LHG FGEDG +Q + E+ +IPY  +G+
Sbjct: 68  KLAEGEGTQTALNAVFSRLYGEENQAVDIMFPLLHGTFGEDGTIQGLFEMADIPYVGTGV 127

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKG 135
           LASA  MDK+  K++ +  G+P C     NR   +          +  +  P  +KP   
Sbjct: 128 LASAAGMDKVVMKKLFAQAGLPQCEYCYFNRTQWERGQHEVLKNIEDKLGFPSFVKPANL 187

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--DVTEIA 193
           GSS+GI   K  + +   +  +  +   D++++E++VD  E+   V+G+      V    
Sbjct: 188 GSSVGISKAKNREQLKAAIESALRF--DDKIIVEEFVDAREVEVSVLGNDEPMASVPGEI 245

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
           V  S++Y Y  KY+   S   +PA+I  D    ++ LA  A +AI   GI+R+DF     
Sbjct: 246 VSSSEYYDYAAKYTDGQSQMQIPAEIDPDTADRLRDLAIAAFKAIEGGGITRADFFVRRS 305

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
              +   E+N  PG TP S++P +    G S+RELL  M+E
Sbjct: 306 DNAILINEVNTMPGFTPFSMYPLLWRETGVSYRELLDRMIE 346


>gi|298489811|ref|YP_003719988.1| D-alanine/D-alanine ligase ['Nostoc azollae' 0708]
 gi|298231729|gb|ADI62865.1| D-alanine/D-alanine ligase ['Nostoc azollae' 0708]
          Length = 351

 Score =  317 bits (812), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 90/342 (26%), Positives = 158/342 (46%), Gaps = 48/342 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDA----GFKVSQIDVDRSVGLVLAHL------- 49
           + +L GG S E EVS+ S +  A+AL        +++    + +        +       
Sbjct: 6   VGLLFGGRSGEHEVSIISARGIANALSAEENSHKYEIMPFYIQKDGFWQAGEVAQQVLTS 65

Query: 50  ---------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
                                + DL F +LHG  GEDG +QA+L L+++P+  SG+L SA
Sbjct: 66  GVAKEHPGNRANLWQFPPQTAEIDLWFPILHGPNGEDGTIQALLTLMQVPFVGSGVLGSA 125

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTM------------DSQHLISPPYVIKPLKGG 136
             MDK+  K   +  G+P      + R  +            + +  +  PY +KP   G
Sbjct: 126 TGMDKIAMKTAFAQAGLPQVKYKALTRAQIWSNPCVFPKLCDEIEATLGYPYFVKPANLG 185

Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP- 195
           SS+GI  ++  Q +   L  ++   +  ++++E  V   E+ C V+G+ +   + I    
Sbjct: 186 SSVGIAKVQSRQELEAALDNAA--TYDRRIIVEAGVVAREVECAVLGNDNPKASVIGEIT 243

Query: 196 -KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
             SDFY YE KY+   +   +PA +P    +++Q  A  A  A+   G++R DF +   +
Sbjct: 244 FDSDFYDYETKYTQGKADLFIPAHLPESAVQQIQEKALQAFTAVDAAGLARVDFFYVEAT 303

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            ++   EIN  PG T  S++P++ A  G SF +L+  +++ A
Sbjct: 304 GEILINEINTLPGFTSTSMYPQLWANTGISFPKLVDQLIQLA 345


>gi|15925073|ref|NP_372607.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|15927658|ref|NP_375191.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus
           N315]
 gi|57650756|ref|YP_186890.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus
           COL]
 gi|82751685|ref|YP_417426.1| D-alanyl-alanine synthetase A [Staphylococcus aureus RF122]
 gi|87159975|ref|YP_494685.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|88195984|ref|YP_500797.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|148268535|ref|YP_001247478.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus
           JH9]
 gi|150394599|ref|YP_001317274.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus
           JH1]
 gi|151222199|ref|YP_001333021.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|156980399|ref|YP_001442658.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|161510295|ref|YP_001575954.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|221141604|ref|ZP_03566097.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus
           str. JKD6009]
 gi|255006872|ref|ZP_05145473.2| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus
           Mu50-omega]
 gi|257793842|ref|ZP_05642821.1| D-alanyl-alanine synthetase A [Staphylococcus aureus A9781]
 gi|258407010|ref|ZP_05680160.1| D-alanyl-alanine synthetase A [Staphylococcus aureus A9763]
 gi|258422031|ref|ZP_05684948.1| D-alanyl-alanine synthetase A [Staphylococcus aureus A9719]
 gi|258440494|ref|ZP_05690664.1| D-alanyl-alanine synthetase A [Staphylococcus aureus A8115]
 gi|258445702|ref|ZP_05693880.1| D-alanyl-alanine synthetase A [Staphylococcus aureus A6300]
 gi|258450156|ref|ZP_05698251.1| D-alanyl-alanine synthetase A [Staphylococcus aureus A6224]
 gi|258453206|ref|ZP_05701197.1| D-alanyl-alanine synthetase A [Staphylococcus aureus A5948]
 gi|258453389|ref|ZP_05701371.1| D-alanyl-alanine synthetase A [Staphylococcus aureus A5937]
 gi|262052496|ref|ZP_06024694.1| D-alanylalanine synthetase [Staphylococcus aureus 930918-3]
 gi|269203719|ref|YP_003282988.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus
           ED98]
 gi|282895277|ref|ZP_06303490.1| D-alanine-D-alanine ligase [Staphylococcus aureus A8117]
 gi|282923072|ref|ZP_06330757.1| D-alanine-D-alanine ligase [Staphylococcus aureus A9765]
 gi|282929555|ref|ZP_06336952.1| D-alanine-D-alanine ligase [Staphylococcus aureus A10102]
 gi|284025118|ref|ZP_06379516.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus
           132]
 gi|294850568|ref|ZP_06791295.1| D-alanine-D-alanine ligase [Staphylococcus aureus A9754]
 gi|295407014|ref|ZP_06816816.1| D-alanine-D-alanine ligase [Staphylococcus aureus A8819]
 gi|296275713|ref|ZP_06858220.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus
           MR1]
 gi|297246743|ref|ZP_06930560.1| D-alanine-D-alanine ligase [Staphylococcus aureus A8796]
 gi|54036952|sp|P63892|DDL_STAAN RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|54040737|sp|P63891|DDL_STAAM RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|71153332|sp|Q5HEB7|DDL_STAAC RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|122538976|sp|Q2FWH3|DDL_STAA8 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|123484968|sp|Q2FF43|DDL_STAA3 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|123548215|sp|Q2YUH1|DDL_STAAB RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|166198505|sp|A7X4R6|DDL_STAA1 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|172048980|sp|A6QIS7|DDL_STAAE RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|189083058|sp|A6U3G9|DDL_STAA2 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|189083059|sp|A5IUM9|DDL_STAA9 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|189083060|sp|A8Z4Y6|DDL_STAAT RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|13701878|dbj|BAB43170.1| D-alanine-D-alanine ligase [Staphylococcus aureus subsp. aureus
           N315]
 gi|14247856|dbj|BAB58245.1| D-alanine-D-alanine ligase [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|57284942|gb|AAW37036.1| D-alanine--D-alanine ligase [Staphylococcus aureus subsp. aureus
           COL]
 gi|82657216|emb|CAI81656.1| D-alanine-D-alanine ligase [Staphylococcus aureus RF122]
 gi|87125949|gb|ABD20463.1| D-alanine--D-alanine ligase [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|87203542|gb|ABD31352.1| D-alanine--D-alanine ligase [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|147741604|gb|ABQ49902.1| D-alanine--D-alanine ligase [Staphylococcus aureus subsp. aureus
           JH9]
 gi|149947051|gb|ABR52987.1| D-alanine--D-alanine ligase [Staphylococcus aureus subsp. aureus
           JH1]
 gi|150374999|dbj|BAF68259.1| D-alanine-D-alanine ligase [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|156722534|dbj|BAF78951.1| D-alanine-D-alanine ligase [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|160369104|gb|ABX30075.1| D-alanine--D-alanine ligase [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|257787814|gb|EEV26154.1| D-alanyl-alanine synthetase A [Staphylococcus aureus A9781]
 gi|257841343|gb|EEV65787.1| D-alanyl-alanine synthetase A [Staphylococcus aureus A9763]
 gi|257841931|gb|EEV66363.1| D-alanyl-alanine synthetase A [Staphylococcus aureus A9719]
 gi|257852563|gb|EEV76481.1| D-alanyl-alanine synthetase A [Staphylococcus aureus A8115]
 gi|257855541|gb|EEV78478.1| D-alanyl-alanine synthetase A [Staphylococcus aureus A6300]
 gi|257856630|gb|EEV79536.1| D-alanyl-alanine synthetase A [Staphylococcus aureus A6224]
 gi|257859152|gb|EEV82009.1| D-alanyl-alanine synthetase A [Staphylococcus aureus A5948]
 gi|257864370|gb|EEV87116.1| D-alanyl-alanine synthetase A [Staphylococcus aureus A5937]
 gi|259159617|gb|EEW44663.1| D-alanylalanine synthetase [Staphylococcus aureus 930918-3]
 gi|262076009|gb|ACY11982.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus
           ED98]
 gi|269941683|emb|CBI50090.1| D-alanine--D-alanine ligase [Staphylococcus aureus subsp. aureus
           TW20]
 gi|282589034|gb|EFB94138.1| D-alanine-D-alanine ligase [Staphylococcus aureus A10102]
 gi|282593263|gb|EFB98260.1| D-alanine-D-alanine ligase [Staphylococcus aureus A9765]
 gi|282762350|gb|EFC02497.1| D-alanine-D-alanine ligase [Staphylococcus aureus A8117]
 gi|285817748|gb|ADC38235.1| D-alanine--D-alanine ligase [Staphylococcus aureus 04-02981]
 gi|294822588|gb|EFG39030.1| D-alanine-D-alanine ligase [Staphylococcus aureus A9754]
 gi|294968039|gb|EFG44066.1| D-alanine-D-alanine ligase [Staphylococcus aureus A8819]
 gi|297176403|gb|EFH35675.1| D-alanine-D-alanine ligase [Staphylococcus aureus A8796]
 gi|298695357|gb|ADI98579.1| D-alanine-D-alanine ligase [Staphylococcus aureus subsp. aureus
           ED133]
 gi|302333729|gb|ADL23922.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus
           JKD6159]
 gi|312830435|emb|CBX35277.1| D-alanine--D-alanine ligase (D-alanylalanine
           synthetase)(D-Ala-D-Ala ligase) [Staphylococcus aureus
           subsp. aureus ECT-R 2]
 gi|315128754|gb|EFT84754.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus
           CGS03]
 gi|315196985|gb|EFU27327.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus
           CGS01]
 gi|323439201|gb|EGA96928.1| D-alanyl-alanine synthetase A [Staphylococcus aureus O11]
 gi|323442421|gb|EGB00050.1| D-alanyl-alanine synthetase A [Staphylococcus aureus O46]
 gi|329314768|gb|AEB89181.1| D-alanine--D-alanine ligase [Staphylococcus aureus subsp. aureus
           T0131]
 gi|329724009|gb|EGG60533.1| D-ala D-ala ligase N-terminal domain protein [Staphylococcus aureus
           subsp. aureus 21189]
 gi|329726355|gb|EGG62823.1| D-ala D-ala ligase N-terminal domain protein [Staphylococcus aureus
           subsp. aureus 21172]
 gi|329729270|gb|EGG65678.1| D-ala D-ala ligase N-terminal domain protein [Staphylococcus aureus
           subsp. aureus 21193]
          Length = 356

 Score =  317 bits (812), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 85/339 (25%), Positives = 151/339 (44%), Gaps = 46/339 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           + ++ GG S+E EVS+ + +   +A++   + V  I +         +            
Sbjct: 6   ICIVFGGKSAEHEVSILTAQNVLNAIDKDKYHVDIIYITNDGDWRKQNNITAEIKSTDEL 65

Query: 49  --------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
                                  D  F +LHG  GEDG +Q + E+L++PY  +G+L++A
Sbjct: 66  HLENGEALEISQLLKESSSGQPYDAVFPLLHGPNGEDGTIQGLFEVLDVPYVGNGVLSAA 125

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSL 139
            SMDK+  KQ+    G+P  P I   R   +             ++ P  +KP   GSS+
Sbjct: 126 SSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYEHNILKLVNDKLNYPVFVKPANLGSSV 185

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKS 197
           GI     +  +   + ++  ++   +L+IEQ V+  E+   V+G+   + T     V   
Sbjct: 186 GISKCNNEAELKEGIKEAFQFDR--KLVIEQGVNAREIEVAVLGNDYPEATWPGEVVKDV 243

Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
            FY Y+ KY        +PA +  D+   ++ +A  A +A  C G+ R+DF       ++
Sbjct: 244 AFYDYKSKYKDGKVQLQIPADLDEDVQLTLRNMALEAFKATDCSGLVRADFFVTE-DNQI 302

Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +  E N  PG T  S++P++    G S+ EL+  ++E A
Sbjct: 303 YINETNAMPGFTAFSMYPKLWENMGLSYPELITKLIELA 341


>gi|297210098|ref|ZP_06926491.1| D-alanine--D-alanine ligase [Staphylococcus aureus subsp. aureus
           ATCC 51811]
 gi|300910460|ref|ZP_07127912.1| D-alanine--D-alanine ligase [Staphylococcus aureus subsp. aureus
           TCH70]
 gi|296885298|gb|EFH24238.1| D-alanine--D-alanine ligase [Staphylococcus aureus subsp. aureus
           ATCC 51811]
 gi|300888302|gb|EFK83493.1| D-alanine--D-alanine ligase [Staphylococcus aureus subsp. aureus
           TCH70]
          Length = 393

 Score =  316 bits (811), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 85/339 (25%), Positives = 151/339 (44%), Gaps = 46/339 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           + ++ GG S+E EVS+ + +   +A++   + V  I +         +            
Sbjct: 43  ICIVFGGKSAEHEVSILTAQNVLNAIDKDKYHVDIIYITNDGDWRKQNNITAEIISTDEL 102

Query: 49  --------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
                                  D  F +LHG  GEDG +Q + E+L++PY  +G+L++A
Sbjct: 103 HLENGEALEISQLLKESSSGQPYDAVFPLLHGPNGEDGTIQGLFEVLDVPYVGNGVLSAA 162

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSL 139
            SMDK+  KQ+    G+P  P I   R   +             ++ P  +KP   GSS+
Sbjct: 163 SSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYEHNILKLVNDKLNYPVFVKPANLGSSV 222

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKS 197
           GI     +  +   + ++  ++   +L+IEQ V+  E+   V+G+   + T     V   
Sbjct: 223 GISKCNNEAELKEGIKEAFQFDR--KLVIEQGVNAREIEVAVLGNDYPEATWPGEVVKDV 280

Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
            FY Y+ KY        +PA +  D+   ++ +A  A +A  C G+ R+DF       ++
Sbjct: 281 AFYDYKSKYKDGKVQLQIPADLDEDVQLTLRNMALEAFKATDCSGLVRADFFVTE-DNQI 339

Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +  E N  PG T  S++P++    G S+ EL+  ++E A
Sbjct: 340 YINETNAMPGFTAFSMYPKLWENMGLSYPELITKLIELA 378


>gi|315645165|ref|ZP_07898291.1| D-alanine/D-alanine ligase [Paenibacillus vortex V453]
 gi|315279586|gb|EFU42891.1| D-alanine/D-alanine ligase [Paenibacillus vortex V453]
          Length = 364

 Score =  316 bits (811), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 95/341 (27%), Positives = 157/341 (46%), Gaps = 49/341 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           + ++ GG S E EVSLS+  A  +A +   +++    + +     +              
Sbjct: 8   VGLVYGGKSGEHEVSLSTAFAVMNAFDFDKYEMIPFYISKQGTWRIGSKRSAPFSQLEDL 67

Query: 47  ----------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84
                                  +   D+ F +LHG FGEDG +Q + E+ +IPY  +G+
Sbjct: 68  KLAEGEGTQTALNAVFSRLYGQENQAVDIMFPLLHGTFGEDGTIQGLFEMADIPYVGTGV 127

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPLKG 135
           LASA  MDK+  K++ +  G+P C     NR            D +  +  P  +KP   
Sbjct: 128 LASAAGMDKVVMKKLFAQAGLPQCEYCYFNRTQWEQGQYNVLKDIEDKLGFPSFVKPANL 187

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--DVTEIA 193
           GSS+GI   K  + +   +  +  +   D++++E++VD  E+   V+G+      V    
Sbjct: 188 GSSVGISKAKNREQLKSAIESALRF--DDKIIVEEFVDAREVEVSVLGNDEPMASVPGEI 245

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
           V  S++Y Y  KY+   S   +PA+I  D+   ++ LA  A +AI   GI+R+DF     
Sbjct: 246 VSSSEYYDYAAKYTDGQSQMQIPAEIEPDVADRLRELAINAFKAIEGGGITRADFFVRRS 305

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
              +   E+N  PG TP S++P +    G S+RELL  M+E
Sbjct: 306 DGAILINEVNTMPGFTPFSMYPLLWRETGVSYRELLDRMIE 346


>gi|152996625|ref|YP_001341460.1| D-alanine--D-alanine ligase [Marinomonas sp. MWYL1]
 gi|190359163|sp|A6VYJ6|DDL_MARMS RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|150837549|gb|ABR71525.1| D-alanine--D-alanine ligase [Marinomonas sp. MWYL1]
          Length = 317

 Score =  316 bits (811), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 101/304 (33%), Positives = 162/304 (53%), Gaps = 11/304 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-----DRSVGLVLAHLKPDLAF 55
           +AV+ GG S+EREVSL SG   A  L   G++V ++D+          + L  ++ DLAF
Sbjct: 10  IAVIYGGRSAEREVSLQSGPLVAEGLRAKGYQVVELDLYGSNAALDPIVQLQSIEFDLAF 69

Query: 56  NVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-LVN 114
             LHG  GEDG VQA+LE+   PYT S  LA  L+MDK+ +K+  +  G+P    +  V+
Sbjct: 70  IALHGGEGEDGRVQALLEMFGKPYTGSSPLACGLAMDKVLTKRFWNGIGIPTPAYLSFVD 129

Query: 115 RFTMD-SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
               D  +  +S P ++KP + GS++GI        +   L+++    +   +L+E+++D
Sbjct: 130 HANADLIEEQMSYPVIVKPSREGSTIGINKAMNRAELDDALIKAL--EYDSDILVEEFID 187

Query: 174 GIELTCGVMGDASLDVTEI-AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
           G E T  V+ D +     +   P    Y YE KY + ++ ++LP  +  D   E+Q LA 
Sbjct: 188 GPEFTVTVIDDVAYPPIGLKPAPDHKLYDYEAKYIADDTEYLLPCGLDEDDENELQMLAL 247

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
            A++++GC G  R D + D      + LE+N  PGMT  S+ P  A Y G  +  L+  +
Sbjct: 248 DAYRSLGCFGWGRVDVMRDQA-GVFWVLEVNTAPGMTSHSLVPMAAKYVGIDYASLVEKI 306

Query: 293 VEDA 296
            ++A
Sbjct: 307 AQNA 310


>gi|82775721|ref|YP_402068.1| D-alanyl-alanine synthetase A [Shigella dysenteriae Sd197]
 gi|309786933|ref|ZP_07681546.1| D-alanine--D-alanine ligase [Shigella dysenteriae 1617]
 gi|81239869|gb|ABB60579.1| D-alanine-D-alanine ligase A [Shigella dysenteriae Sd197]
 gi|308925259|gb|EFP70753.1| D-alanine--D-alanine ligase [Shigella dysenteriae 1617]
          Length = 364

 Score =  316 bits (811), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 89/348 (25%), Positives = 163/348 (46%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP- 51
           + ++ GG S+E EVSL S K    A++ + F V  + +D+            +L    P 
Sbjct: 6   VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPA 65

Query: 52  ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
                                             D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  HIALSPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLISPPYVIK 131
           P+  S +LASA  MDK  +K+++   G+ + P I + R         + +  +  P  +K
Sbjct: 126 PFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  +  ++     +    ++    ++++EQ + G E+ C V+G+ +   + 
Sbjct: 186 PANQGSSVGVSKVTSEEQY--AIAADLAFEFDHKVIVEQGLKGREIECAVLGNDNPQAST 243

Query: 192 IA--VPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               V  SDFY+Y+ KY     +  V+PA I  +I  +++ +A  A+Q +GC G++R D 
Sbjct: 244 CGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              P   +V   EIN  PG T +S++P++   +G  + +L+  ++E A
Sbjct: 304 FLTP-ENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350


>gi|302185668|ref|ZP_07262341.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. syringae
           642]
          Length = 363

 Score =  316 bits (811), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 97/354 (27%), Positives = 173/354 (48%), Gaps = 57/354 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR--------SVGLVLAHLKP- 51
           +A++ GG SSE EVSL S +   +A++   + ++ I VD+            +L    P 
Sbjct: 5   VAIVFGGQSSEHEVSLQSARNVINAIDRERYALTLIGVDKLGRWLHFDEADYLLNATDPA 64

Query: 52  ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
                                             D+ F ++HG FGEDG +Q +L +L +
Sbjct: 65  RIKLSASGKPLSLLPGSIGGQFVEVESGQPLAAIDVVFPLIHGAFGEDGALQGLLRMLAV 124

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT----MDSQHLISPPYVIKPL 133
           P+  + +L+SA  MDK  +K+++   G+ V P  +++R       ++   +  P  +KP 
Sbjct: 125 PFVGADVLSSAACMDKDVTKRLLRDAGIAVAPFRVLSRGESLSFKEAAEQLGLPMFVKPA 184

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG--DASLDVTE 191
             GSS+G+  +  +      L     ++H  +LLIEQ + G E+ C V+G  DA + V  
Sbjct: 185 NQGSSVGVSKVSDEAGFVAALALGFEFDH--KLLIEQGIVGREVECAVLGNFDAQVSVCG 242

Query: 192 IAVPKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
             +   +FY+Y+ KY + +   + +PA++P D+  +V+ +A  A++ +GC G+SR DF  
Sbjct: 243 EVIANDEFYAYDTKYLNGDQARIAIPAEMPADLSDQVRDVALQAYKVLGCAGLSRVDFFV 302

Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV----EDASCLR 300
               R +   E+N  PG T +S++P++   +G S+ EL+  ++    E A   R
Sbjct: 303 TE-GRDIIINEVNTLPGFTSISMYPKLWHASGMSYAELIHRLIVLALERADQAR 355


>gi|51473447|ref|YP_067204.1| D-alanine--D-alanine ligase [Rickettsia typhi str. Wilmington]
 gi|81390201|sp|Q68XC0|DDL_RICTY RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|51459759|gb|AAU03722.1| Alanine:alanine ligase (ADP-forming) [Rickettsia typhi str.
           Wilmington]
          Length = 321

 Score =  316 bits (811), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 117/297 (39%), Positives = 188/297 (63%), Gaps = 3/297 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +A++ GG+S+EREVSL S    + AL + G+KV+ ID+   + + L  + PD+ FN LHG
Sbjct: 25  IALVAGGMSAEREVSLISSVGVSKALIELGYKVTFIDMGADIAVKLQEINPDIVFNCLHG 84

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG +  +L ++ IPYTHSG+L+SAL+ DK+ S+       + +  SI+V++    +
Sbjct: 85  TYGEDGCLPGLLNIMRIPYTHSGVLSSALAFDKIHSRSCFLKNNINMADSIVVSKSDHIN 144

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  PYVIKPLK GSS+G+ VI ++            + +G+ ++IEQY+ G EL   
Sbjct: 145 TDPMKRPYVIKPLKQGSSIGVEVIFEEDDFHF---IDYDFPYGEDIIIEQYIQGQELQVA 201

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           ++   +L V EI + K+ FY YE KY+   + HV PA++P ++YK++   +   ++ I C
Sbjct: 202 LLNGKALGVLEIKLLKNRFYDYETKYNKGFAKHVCPAQLPANLYKKLLIESEKIYKTINC 261

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           +G  R++F+ +  + K++ LEIN  PGMTP+SI PE+AAYAG SF  L+  +++ AS
Sbjct: 262 KGPVRAEFILEEQTNKLYVLEINTHPGMTPLSIVPEIAAYAGISFTNLIEEIIKMAS 318


>gi|258433599|ref|ZP_05688672.1| D-alanyl-alanine synthetase A [Staphylococcus aureus A9299]
 gi|257849330|gb|EEV73309.1| D-alanyl-alanine synthetase A [Staphylococcus aureus A9299]
          Length = 356

 Score =  316 bits (811), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 85/339 (25%), Positives = 151/339 (44%), Gaps = 46/339 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           + ++ GG S+E EVS+ + +   +A++   + V  I +         +            
Sbjct: 6   ICIVFGGKSAEHEVSILTAQNVLNAIDKDKYHVDIIYITNDGDWRKQNNITAEIKSTDEL 65

Query: 49  --------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
                                  D  F +LHG  GEDG +Q + E+L++PY  +G+L++A
Sbjct: 66  HLENGEALEISQLLKESSSGQPYDAVFPLLHGPNGEDGTIQGLFEVLDVPYVGNGVLSAA 125

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSL 139
            SMDK+  KQ+    G+P  P I   R   +             ++ P  +KP   GSS+
Sbjct: 126 SSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYEHNILKLVNDKLNYPVFVKPANLGSSV 185

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKS 197
           GI     +  +   + ++  ++   +L+IEQ V+  E+   V+G+   + T     V   
Sbjct: 186 GISKCNNEAELKEGVKEAFQFDR--KLVIEQGVNAREIEVAVLGNDYPEATWPGEVVKDV 243

Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
            FY Y+ KY        +PA +  D+   ++ +A  A +A  C G+ R+DF       ++
Sbjct: 244 AFYDYKSKYKDGKVQLQIPADLDEDVQLTLRNMALEAFKATDCSGLVRADFFVTE-DNQI 302

Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +  E N  PG T  S++P++    G S+ EL+  ++E A
Sbjct: 303 YINETNAMPGFTAFSMYPKLWENMGLSYPELITKLIELA 341


>gi|302751964|gb|ADL66141.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus
           str. JKD6008]
          Length = 361

 Score =  316 bits (811), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 85/339 (25%), Positives = 151/339 (44%), Gaps = 46/339 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           + ++ GG S+E EVS+ + +   +A++   + V  I +         +            
Sbjct: 11  ICIVFGGKSAEHEVSILTAQNVLNAIDKDKYHVDIIYITNDGDWRKQNNITAEIKSTDEL 70

Query: 49  --------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
                                  D  F +LHG  GEDG +Q + E+L++PY  +G+L++A
Sbjct: 71  HLENGEALEISQLLKESSSGQPYDAVFPLLHGPNGEDGTIQGLFEVLDVPYVGNGVLSAA 130

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSL 139
            SMDK+  KQ+    G+P  P I   R   +             ++ P  +KP   GSS+
Sbjct: 131 SSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYEHNILKLVNDKLNYPVFVKPANLGSSV 190

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKS 197
           GI     +  +   + ++  ++   +L+IEQ V+  E+   V+G+   + T     V   
Sbjct: 191 GISKCNNEAELKEGIKEAFQFDR--KLVIEQGVNAREIEVAVLGNDYPEATWPGEVVKDV 248

Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
            FY Y+ KY        +PA +  D+   ++ +A  A +A  C G+ R+DF       ++
Sbjct: 249 AFYDYKSKYKDGKVQLQIPADLDEDVQLTLRNMALEAFKATDCSGLVRADFFVTE-DNQI 307

Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +  E N  PG T  S++P++    G S+ EL+  ++E A
Sbjct: 308 YINETNAMPGFTAFSMYPKLWENMGLSYPELITKLIELA 346


>gi|218437113|ref|YP_002375442.1| D-alanyl-alanine synthetase A [Cyanothece sp. PCC 7424]
 gi|226729270|sp|B7K991|DDL_CYAP7 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|218169841|gb|ACK68574.1| D-alanine/D-alanine ligase [Cyanothece sp. PCC 7424]
          Length = 352

 Score =  316 bits (811), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 95/343 (27%), Positives = 169/343 (49%), Gaps = 49/343 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASAL----EDAGFKVSQIDVDRSVGL--------VLAH 48
           + +L GG S E EVS++S KA A+AL        + +  + + +            VL  
Sbjct: 6   VGLLFGGRSGEHEVSINSAKAIATALSASENATKYDILPVYIRKDGCWQAPDVAQQVLES 65

Query: 49  LKP---------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87
            +P                     D+ F +LHG  GEDG +Q +L L+++PY  SG+L S
Sbjct: 66  AQPLSTPTDKSPQLWQFPPQVNQVDVWFPILHGPNGEDGTLQGLLTLMQVPYVGSGVLGS 125

Query: 88  ALSMDKMRSKQVVSSCGVPVCPSILVNRFTM------------DSQHLISPPYVIKPLKG 135
           A+ MDK+  K V +  G+P    + ++R  +            + +  ++ P  +KP   
Sbjct: 126 AVGMDKITMKTVFAKAGLPQVKYMTLSRGQIWSNPCIFPKLCDEIEETLNYPCFVKPANL 185

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195
           GSS+GI  ++    +   L Q++S++   ++++E  V   E+ C V+G+ +   + +   
Sbjct: 186 GSSVGIAKVRSRSELEKALDQAASYDR--RIIVEAGVIAREVECAVLGNDNPKASVVGEI 243

Query: 196 --KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
              SDFY YE KY+   +  ++PA +P  I  ++Q ++  A  A+   G++R DF +   
Sbjct: 244 TFNSDFYDYETKYTDGRAQLLIPASVPDSIMTQIQEMSLAAFAAVDAAGLARVDFFYVEK 303

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           + ++   EIN  PG T  S++P++ A  G SF +L+  ++E A
Sbjct: 304 TGEILINEINTLPGFTAFSMYPQLWAATGISFPQLVDRLIELA 346


>gi|21283735|ref|NP_646823.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49486876|ref|YP_044097.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|23813964|sp|Q8NVH8|DDL_STAAW RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|56748621|sp|Q6G7M7|DDL_STAAS RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|21205177|dbj|BAB95871.1| D-alanine-D-alanine ligase [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49245319|emb|CAG43794.1| D-alanine--D-alanine ligase [Staphylococcus aureus subsp. aureus
           MSSA476]
          Length = 356

 Score =  316 bits (811), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 85/339 (25%), Positives = 151/339 (44%), Gaps = 46/339 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           + ++ GG S+E EVS+ + +   +A++   + V  I +         +            
Sbjct: 6   ICIVFGGKSAEHEVSILTAQNVLNAIDKDKYHVDIIYITNDGDWRKQNNITAEIISTDEL 65

Query: 49  --------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
                                  D  F +LHG  GEDG +Q + E+L++PY  +G+L++A
Sbjct: 66  HLENGEALEISQLLKESSSGQPYDAVFPLLHGPNGEDGTIQGLFEVLDVPYVGNGVLSAA 125

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSL 139
            SMDK+  KQ+    G+P  P I   R   +             ++ P  +KP   GSS+
Sbjct: 126 SSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYEHNILKLVNDKLNYPVFVKPANLGSSV 185

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKS 197
           GI     +  +   + ++  ++   +L+IEQ V+  E+   V+G+   + T     V   
Sbjct: 186 GISKCNNEAELKEGIKEAFQFDR--KLVIEQGVNAREIEVAVLGNDYPEATWPGEVVKDV 243

Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
            FY Y+ KY        +PA +  D+   ++ +A  A +A  C G+ R+DF       ++
Sbjct: 244 AFYDYKSKYKDGKVQLQIPADLDEDVQLTLRNMALEAFKATDCSGLVRADFFVTE-DNQI 302

Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +  E N  PG T  S++P++    G S+ EL+  ++E A
Sbjct: 303 YINETNAMPGFTAFSMYPKLWENMGLSYPELITKLIELA 341


>gi|237798746|ref|ZP_04587207.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. oryzae str.
           1_6]
 gi|331021599|gb|EGI01656.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. oryzae str.
           1_6]
          Length = 363

 Score =  316 bits (811), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 94/354 (26%), Positives = 171/354 (48%), Gaps = 57/354 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50
           +A++ GG SSE EVSL S +   +A++   + ++ I VD+    +               
Sbjct: 5   VAIVFGGQSSEHEVSLQSARNVINAIDRERYALTLIGVDKLGRWLRFEEADYLINADDPA 64

Query: 51  ---------------------------------PDLAFNVLHGNFGEDGLVQAILELLEI 77
                                             D+ F ++HG FGEDG +Q +L +L I
Sbjct: 65  RIRLSASGKQLSLLPGRTGGQFVEVETGQPLPAIDVVFPLIHGAFGEDGALQGLLRMLAI 124

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT----MDSQHLISPPYVIKPL 133
           P+  + +L+SA  MDK  +K+++   G+ V P +++ R       D+   +  P  +KP 
Sbjct: 125 PFVGADVLSSAACMDKDVTKRLLRDAGIDVAPFLVLTRGQTIDFADAAAQLGLPMFVKPA 184

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI- 192
             GSS+G+  +  +      L     ++H  +LLIEQ + G E+ C V+G+    V+   
Sbjct: 185 NQGSSVGVSKVSDEAGFAGALALGFEFDH--KLLIEQGIVGREVECAVLGNFEPQVSVCG 242

Query: 193 -AVPKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
             +   +FY+Y+ KY + +   + +PA +P+D+  +V+ +A  A++ +GC G+SR DF  
Sbjct: 243 EVIANDEFYAYDTKYLNGDQARIAIPADMPVDLSDQVRDVALQAYKVLGCAGLSRVDFFV 302

Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV----EDASCLR 300
               R++   E+N  PG T +S++P++   +G ++ EL+  ++    E A   R
Sbjct: 303 TEA-RQIIINEVNTLPGFTSISMYPKLWQASGLTYAELIHRLIVLALERAEQAR 355


>gi|92114310|ref|YP_574238.1| D-alanine--D-alanine ligase [Chromohalobacter salexigens DSM 3043]
 gi|122419690|sp|Q1QVG9|DDL_CHRSD RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|91797400|gb|ABE59539.1| D-alanine--D-alanine ligase [Chromohalobacter salexigens DSM 3043]
          Length = 314

 Score =  316 bits (810), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 106/293 (36%), Positives = 161/293 (54%), Gaps = 6/293 (2%)

Query: 5   MGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGE 64
            GG S+EREVSL SG A  ++L  +G      D        L  L PD  F  +HG  GE
Sbjct: 22  YGGRSAEREVSLLSGGAVLASLVRSGVDAHGFDFAGGGLSGLEALAPDRVFIAMHGRDGE 81

Query: 65  DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN-RFTMDS-QH 122
           DG +Q  LELL IPYT SG+LASAL MDK R+KQ+  + G+P   S+++      D+   
Sbjct: 82  DGSLQGALELLGIPYTGSGVLASALGMDKERTKQLWRAHGLPTPESVMLEGEPDWDAVIE 141

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            +  P ++KP+  GS++GI +++   ++     ++S +     ++ E++V G E T  ++
Sbjct: 142 ALGLPLIVKPVHEGSTIGISIVETRDALIAAHAEASRF--DSAIMAERFVQGEEYTVSLL 199

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
           GD  L    + VP S FY YE KY S  + ++LP  +  +  + +  +   A +AIG RG
Sbjct: 200 GDEVLPAIRVEVP-SGFYDYEAKYHSDTTRYLLPCGLEQEEERMLGDVCRRAFEAIGGRG 258

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
             R D + D   R  + LE+N  PGMT  S+ P+ AA+AG  F  L+L +++ 
Sbjct: 259 WGRVDVMRDAQGR-FWLLEVNTVPGMTDHSLVPQAAAHAGLDFDALVLRILDT 310


>gi|158521437|ref|YP_001529307.1| D-alanine--D-alanine ligase [Desulfococcus oleovorans Hxd3]
 gi|158510263|gb|ABW67230.1| D-alanine--D-alanine ligase [Desulfococcus oleovorans Hxd3]
          Length = 313

 Score =  316 bits (810), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 110/312 (35%), Positives = 173/312 (55%), Gaps = 16/312 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK-PDLAFNVLH 59
           +A++ GG+SSER+VSL+ GK   +AL+ A ++V + D    +  ++      D AF  LH
Sbjct: 6   VALICGGVSSERDVSLAGGKMIQAALDPARYRVLRYDSRTDLARLVQEAPGIDTAFVNLH 65

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G  GEDG +Q +L+LL +PY  SG+L SAL+M+K+ +K+V    G+PV P  +V+     
Sbjct: 66  GVHGEDGTIQGLLDLLGVPYQCSGVLGSALAMNKLAAKRVYQQAGLPVPPYRVVSENRDA 125

Query: 120 S-------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                      +  P V+KP  GGSS+G+ ++K+   +   + ++ +  HG  +L+E Y+
Sbjct: 126 DGSFLDAHADALGFPLVVKPACGGSSIGMSIVKQVSELAPAVDKALA--HGPDVLLEAYI 183

Query: 173 DGIELTCGVMGD---ASLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
            G ELT GV+G+     L V EI       F+ YE KY+   ++ + PA +P D+   V+
Sbjct: 184 QGRELTGGVIGNDDPEPLPVVEIIPGDGYGFFDYEAKYTPGATSEICPAPVPEDLSARVR 243

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
             A  AH A+ C+G SR+D +       +F LE N  PGM P S+ P  A  AG +F +L
Sbjct: 244 DYACRAHSALFCKGYSRTDMIATDTD--LFVLETNTIPGMGPTSLLPLAAKAAGMAFGDL 301

Query: 289 LLWMVEDASCLR 300
           L  ++  +   R
Sbjct: 302 LDRLISLSLEKR 313


>gi|321314130|ref|YP_004206417.1| D-alanyl-alanine synthetase A [Bacillus subtilis BSn5]
 gi|291482865|dbj|BAI83940.1| D-alanyl-alanine synthetase [Bacillus subtilis subsp. natto
           BEST195]
 gi|320020404|gb|ADV95390.1| D-alanyl-alanine synthetase A [Bacillus subtilis BSn5]
          Length = 361

 Score =  316 bits (810), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 89/346 (25%), Positives = 150/346 (43%), Gaps = 53/346 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           + ++ GG S+E  VSL +  A   AL    F +  I +      V               
Sbjct: 5   LGLVYGGKSAEHNVSLQTALAVIKALNTEKFDIHPIYITEKGEWVRGARLTEPVSNVKML 64

Query: 47  -------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81
                                     +   D+ F +LHG  GEDG +Q +LELL IPY  
Sbjct: 65  QFEQGGSAFSPAALNQEMFPQEASQQNEAIDVVFPLLHGPNGEDGTIQGMLELLNIPYVG 124

Query: 82  SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKP 132
           +G+LAS+  MDK+  K + +  G+         +              +  +  P  +KP
Sbjct: 125 NGVLASSAGMDKVVMKHLFAQAGLAQAKYAAFLKKDWTRSPKESCEQVEQELGYPCFVKP 184

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--DVT 190
              GSS+GI   +  + +        ++ +  ++++E+ ++G E+  GV+G+      V 
Sbjct: 185 ANLGSSVGISKCRNREELQKAF--ELAFQYDRKVVVEEGINGREIEIGVLGNDDPKCSVV 242

Query: 191 EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
               PK+DFY Y+ KY   ++  ++PA +  + Y  +  +A  A +AI   G+ R+DF  
Sbjct: 243 GEIAPKTDFYDYKAKYEDGDTDLMIPAIVTDEEYATISDMAIKAFKAIDGSGLVRADFFL 302

Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                +V   E+N  PG TP S+FP +   AG  + +L+  +VE A
Sbjct: 303 TA-DGEVLINEVNTMPGFTPFSMFPLLWKEAGVEYADLIEQLVELA 347


>gi|23098761|ref|NP_692227.1| D-alanyl-alanine synthetase A [Oceanobacillus iheyensis HTE831]
 gi|39930897|sp|Q8ERJ6|DDL_OCEIH RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|22776988|dbj|BAC13262.1| D-alanine-D-alanine ligase A [Oceanobacillus iheyensis HTE831]
          Length = 366

 Score =  316 bits (810), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 90/348 (25%), Positives = 160/348 (45%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           + ++ GG S+E EVSL S K    A++   + V  + +D+     +              
Sbjct: 5   VGIVFGGKSAEHEVSLQSAKNIVDAIDSDKYDVYLLGIDKQGNWHVNDRSHYLINEEDPK 64

Query: 50  --------------------------------KPDLAFNVLHGNFGEDGLVQAILELLEI 77
                                           + D+ F ++HG  GEDG +Q +L +  I
Sbjct: 65  LISLNKTNEGIAVIPGAEKNQIVTSNSTKSLDQLDVIFPIVHGTLGEDGSLQGMLRMANI 124

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVIK 131
           P+  S +L SA+SMDK  +K+++   G+ V           +S      +  +  P  IK
Sbjct: 125 PFVGSSVLGSAISMDKDIAKRLLKDAGLKVAKGYAYRSVDKESIHFDSLKEELGLPMFIK 184

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA--SLDV 189
           P   GSS+G+  ++ ++     +  +  ++H  +LL+E+ + G E+ C V+G+   +  V
Sbjct: 185 PANQGSSVGVHKVENEEQFYSAIKDAFQFDH--KLLVEEAIVGREIECAVLGNEKPAASV 242

Query: 190 TEIAVPKSDFYSYELKYSSL-NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               +P  DFYSYE KY     +   +PAK+   +   +Q +A  A +A+ C G++R D 
Sbjct: 243 PGEILPTGDFYSYEAKYIDETGAVLQIPAKLEEPVVDSIQDIALQAFKALNCEGLARVDV 302

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                  ++   EIN  PG T +S++P++   +G S+REL+  ++E A
Sbjct: 303 FLT-DDNEIVINEINTLPGFTKISMYPKLWEESGVSYRELIENLIELA 349


>gi|332991942|gb|AEF01997.1| D-alanine--D-alanine ligase [Alteromonas sp. SN2]
          Length = 322

 Score =  316 bits (810), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 95/302 (31%), Positives = 155/302 (51%), Gaps = 10/302 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AV+ GG S+ER+VSL+SG A  +AL          D        L   K D    +LHG
Sbjct: 18  VAVMFGGDSAERDVSLNSGNAVLAALLRENVNAIAFDPAERPLTDLISEKVDRVLIMLHG 77

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q  L+LL+IPYT + +L SAL+MDK+ +KQV  S G+P     + ++   ++
Sbjct: 78  RGGEDGSMQGALQLLKIPYTGTPVLGSALAMDKIHTKQVWQSLGLPTAKYEIADKRRFEA 137

Query: 121 ------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
                    +    ++KP + GSS+G+  +   + +   +    ++N+ +Q+L+EQY+ G
Sbjct: 138 GKCSAIMEKLGNEVMVKPAREGSSIGMARVTSAEQLENAIQD--AFNYDNQVLLEQYIKG 195

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
            E T  V+   +L    ++ P + FY Y  KY    + +  P+ +  +    + +L+  A
Sbjct: 196 PEFTVSVIQGQALPSIRMSTPHT-FYDYAAKYQDDTTEYFCPSGLSDEQEAHLAQLSTQA 254

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             +I   G  R D + D      + LE N  PGMT  S+ P+ A  AG SF EL+L ++ 
Sbjct: 255 FDSISGSGWGRIDVMQDG-DGHFYLLEANTVPGMTEKSLVPKAAKVAGLSFDELVLAILA 313

Query: 295 DA 296
            +
Sbjct: 314 TS 315


>gi|119357463|ref|YP_912107.1| D-alanyl-alanine synthetase A [Chlorobium phaeobacteroides DSM 266]
 gi|166198477|sp|A1BH06|DDL_CHLPD RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|119354812|gb|ABL65683.1| D-alanine--D-alanine ligase [Chlorobium phaeobacteroides DSM 266]
          Length = 363

 Score =  316 bits (810), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 99/351 (28%), Positives = 171/351 (48%), Gaps = 57/351 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS------------VGLVLAH 48
           +A++ GG S+E E+S+ S K+ A+ ++   F+V  + +               + L LA 
Sbjct: 6   VALIFGGKSTEHEISIISAKSIAAVIDPFRFQVLPLYITHEGKWFTGEFAENILQLDLAE 65

Query: 49  L--------------------------------KPDLAFNVLHGNFGEDGLVQAILELLE 76
           +                                  DLAF  LHG++GEDG +Q +L+   
Sbjct: 66  MLRSTSLDATGNTLRQMAMHTGQQGFDFDFFKAGIDLAFIALHGSYGEDGRIQGLLDTFG 125

Query: 77  IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPP 127
           IPYT  G+LASA++MDK  +K  V+  G+   P I +      +         +   + P
Sbjct: 126 IPYTGCGVLASAVAMDKALTKLCVTEAGIATAPGITILSSEYFADPKSTQKSIEEQFTWP 185

Query: 128 YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL 187
             +KP   GSS+GI  +     +   L   ++  +  ++L+E+ + G E+   V+G+ + 
Sbjct: 186 VFVKPASLGSSVGISKVHHIGELIAAL--ETACRYDSKILVEKAMQGREVEVAVLGNNAP 243

Query: 188 DV--TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
           +V  T    P S+FY Y  KY    +   +PA+I  ++ ++V++ A  A++A+GCRG+SR
Sbjct: 244 EVSITGEIEPGSEFYDYADKYIHNAAKMYIPARISPELQEQVRKDALRAYKALGCRGMSR 303

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            DF  D  S  +   E+N  PG T +S++P + A +G  F EL+  +++ A
Sbjct: 304 IDFFVDETSGTIVLNEVNTIPGFTDISMYPRLFAASGLPFNELVEKLLQFA 354


>gi|332160674|ref|YP_004297251.1| D-alanine--D-alanine ligase A [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|325664904|gb|ADZ41548.1| D-alanine--D-alanine ligase A [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
          Length = 366

 Score =  316 bits (810), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 94/348 (27%), Positives = 161/348 (46%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP- 51
           + V+ GG S+E EVSL S K    A++   F V+ + +D+            +L    P 
Sbjct: 6   VGVIFGGKSAEHEVSLQSAKNIVDAIDKEKFDVTLLGIDKQGKWHVNDASNYLLNAENPA 65

Query: 52  ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
                                             D+ F ++HG  GEDG +Q +L +  I
Sbjct: 66  LISLNHSNKNVALIPGQEHQQLIATDNASALAQLDVIFPIVHGTLGEDGSLQGLLRMANI 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVIK 131
           P+  SG+L SA+SMDK  +K+++   G+ + P I + R   D+         +  P  IK
Sbjct: 126 PFVGSGVLGSAVSMDKDITKRLLRDAGLNIAPFITLTRANKDNYRFEQVTAKLGLPLFIK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  ++        +  +  ++H  ++L+E  + G E+ C VMG+ +   + 
Sbjct: 186 PANQGSSVGVSKVRNAYEYEQAVALAFDFDH--KVLVESAIVGREIECAVMGNDNPQASL 243

Query: 192 I--AVPKSDFYSYELKYSSL-NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               V   +FYSY+ KY +   +  ++PA I   +   ++ +A  A +A+ CRG++R D 
Sbjct: 244 CGEVVISDEFYSYDTKYINETGAKVIIPASIGSAVSDNIRAVALAAFRALECRGMARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              P   +V   EIN  PG T +S++P++    G    EL+  ++E A
Sbjct: 304 FLTP-DNRVIINEINTLPGFTNISMYPKLWRATGVGSTELITTLIELA 350


>gi|310640274|ref|YP_003945032.1| d-alanine--d-alanine ligase b [Paenibacillus polymyxa SC2]
 gi|309245224|gb|ADO54791.1| D-alanine--D-alanine ligase B [Paenibacillus polymyxa SC2]
          Length = 362

 Score =  316 bits (810), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 87/342 (25%), Positives = 149/342 (43%), Gaps = 48/342 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           + ++ GG S E EVSL +  A  +A     +++    + ++                   
Sbjct: 8   VGLVYGGKSGEHEVSLQTAYAVMNAFNYEKYEIIPFYITKAGDWRRGTLLNAPLTTVEQL 67

Query: 46  -LAHLK-------------------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
            L H +                    D+ F +LHG FGEDG +Q + E+ ++PY  +G+L
Sbjct: 68  KLEHAEGGTKAALDTLFGKLYGEQTLDVLFPLLHGTFGEDGTIQGLFEMADMPYVGAGVL 127

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPLKGG 136
           ASA  MDK   K++    G+P       N             + +  +  P  +KP   G
Sbjct: 128 ASAAGMDKGVMKKLFEHAGLPQVKYCYFNSTQWAQTGHDLVRNIETELGYPCFVKPANLG 187

Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--DVTEIAV 194
           SS+GI      + +   +  +  ++   ++++E+YVD  E+   V+G+      V    V
Sbjct: 188 SSVGISKASNREELEKAVDLALQFDL--KVIVEEYVDAREIEVSVLGNDEPIASVPGEIV 245

Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
             SD+Y Y  KY+   S  ++PA +  ++   ++  A  A +A+   GISR+DF      
Sbjct: 246 SSSDYYDYAAKYTDGQSEMLIPAPLDEEVADRIRESALQAFRALEGCGISRADFFVRRSD 305

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             +   E+N  PG TP S++P +    G S+  LL  M+  A
Sbjct: 306 GHILINEVNTMPGFTPFSMYPLLWRETGVSYVNLLDRMIALA 347


>gi|194334287|ref|YP_002016147.1| D-alanyl-alanine synthetase A [Prosthecochloris aestuarii DSM 271]
 gi|229485974|sp|B4S8W3|DDL_PROA2 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|194312105|gb|ACF46500.1| D-alanine/D-alanine ligase [Prosthecochloris aestuarii DSM 271]
          Length = 360

 Score =  316 bits (810), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 91/351 (25%), Positives = 168/351 (47%), Gaps = 57/351 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           +A++ GG S+E E+S+ S +A A+ ++   +++  I V                      
Sbjct: 6   VALIFGGQSTEHEISIISARAIANHIDTEAYELYPIYVGHDGAWFKGETAQKVLDLDMPA 65

Query: 46  -----------------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLE 76
                                         +    D+A  ++HG+ GEDG +Q +L++  
Sbjct: 66  MLANTSADTIRERLREISFSDPRNRFLFDFSEEGIDVALPIIHGSTGEDGKIQGLLDMFS 125

Query: 77  IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLIS-------PP 127
           +PYT  G+ ASA++MDK  +K      G+ + P   +   R+  D Q ++S        P
Sbjct: 126 VPYTGCGVHASAMTMDKETTKICAEHAGLHIAPYTTIRKLRYQQDPQQVVSVILEEFTLP 185

Query: 128 YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL 187
           + +KP   GSS+GI  + + + +   L    ++    ++LIE+ ++G E+   V+G+ S 
Sbjct: 186 FFVKPASQGSSIGITKVHRPEELAAAL--EKAFMVDTKVLIEKTIEGREIEVAVLGNDSP 243

Query: 188 --DVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
              V     P  DFY +  KY +  ++  +PA++P ++ ++V   A  A++A+ CRG+SR
Sbjct: 244 VASVPGEVEPGGDFYDFTDKYINGKASLHIPARLPEEVLQKVSTEALKAYRALECRGMSR 303

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            DF  +  + K+   EIN  PG T +S++P M   +G  F +L+  +++ A
Sbjct: 304 VDFFIEHATGKIILNEINTVPGFTGISMYPMMMDASGIDFSQLIDRLLQLA 354


>gi|251794848|ref|YP_003009579.1| D-alanine/D-alanine ligase [Paenibacillus sp. JDR-2]
 gi|247542474|gb|ACS99492.1| D-alanine/D-alanine ligase [Paenibacillus sp. JDR-2]
          Length = 375

 Score =  316 bits (810), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 92/353 (26%), Positives = 157/353 (44%), Gaps = 59/353 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           + ++ GG S E +VSL +  A    L+ A ++++   + R     +  +           
Sbjct: 7   LGLIYGGKSGEHDVSLRTAFAVMGELDYAKYEITPFYITRLGEWRVGSMLGGQPGAIDEL 66

Query: 50  -----------------------------------KPDLAFNVLHGNFGEDGLVQAILEL 74
                                                D+ F +LHG FGEDG +Q +LE+
Sbjct: 67  RLAPVDGAPVPIVPDLPLAPLLDRLAGGALPGGGQPIDVVFPLLHGTFGEDGTIQGLLEI 126

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH---------LIS 125
            +IPY  +G+LASA  MDK+  K++ +  G+P C     NR   +             + 
Sbjct: 127 ADIPYVGAGVLASAAGMDKITMKKIFAYEGLPQCVFRYFNRAQWEKDASFFIMECEVALG 186

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            P  +KP   GSS+GI   K    +   +    ++    ++++E++VD  E+   V+G+ 
Sbjct: 187 YPCFVKPSNLGSSVGISKAKNRDELIAAI--DFAFRFDRRVIVEEFVDAREIEVSVLGND 244

Query: 186 SLDVTEIAV--PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
              ++      P ++FY Y+ KY    ST  +PA IP      V+ +A  A  AI   G+
Sbjct: 245 DPKISVPGEIAPSNEFYDYKAKYVDGKSTIHIPANIPNKTADAVRDMALRAFLAIDGAGL 304

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           SR DF       ++F  E+N  PG TP+S++P M   +G  +++LL  +++ A
Sbjct: 305 SRVDFFLRKTDGQLFINEVNTMPGFTPISMYPLMWKESGLPYKDLLDKLIDLA 357


>gi|309792366|ref|ZP_07686834.1| D-alanine--D-alanine ligase [Oscillochloris trichoides DG6]
 gi|308225587|gb|EFO79347.1| D-alanine--D-alanine ligase [Oscillochloris trichoides DG6]
          Length = 365

 Score =  316 bits (810), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 100/360 (27%), Positives = 162/360 (45%), Gaps = 62/360 (17%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           +AVL GG S E EVSL S +A  +AL+   ++V  + + +    +               
Sbjct: 5   VAVLFGGQSGEHEVSLVSAQAVIAALDPTRYRVVPVGISKDGRWLAGSGAMAALVAAADS 64

Query: 46  ----------------------------------LAHLKPDLAFNVLHGNFGEDGLVQAI 71
                                             L     D+ F VLHG  GEDG VQ +
Sbjct: 65  TRLPAGAHYPQEDLEADEVEVAHTGGAGQVSVARLLPPGVDVVFPVLHGPRGEDGTVQGL 124

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QH 122
           LEL  + Y   G+ ASA+ MDK   K   ++ G+P+ P +LV R              + 
Sbjct: 125 LELAGVAYVGCGVAASAVGMDKALMKAAFAAAGLPLLPWLLVRRHEWQQNPEATYNQIEA 184

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            ++ P  +KP   GSS+G+   K    +      + +  +  ++++EQ +   E+   V+
Sbjct: 185 ALTYPVFVKPANMGSSVGVSKAKDRDGLAE--ALAEAARYDRRIVVEQGIPAREIEVSVL 242

Query: 183 GDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           G+   +V+     VP  ++Y Y  KY    S   +PA I  D+ +EV+RLA  A Q+I  
Sbjct: 243 GNDEPEVSIPGEVVPSGEWYDYHAKYLGGQSAIHIPAPISADLSEEVRRLALRAFQSIDG 302

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
            G++R DFL D  S +++  E+N  PG TP+S++ +M A +G  +  LL  ++  A   +
Sbjct: 303 AGLARVDFLLDKESGQLWINEVNTMPGFTPISMYAKMWAASGLDYPTLLDRLISLALERK 362


>gi|294085898|ref|YP_003552658.1| D-alanine--D-alanine ligase [Candidatus Puniceispirillum marinum
           IMCC1322]
 gi|292665473|gb|ADE40574.1| D-alanine--D-alanine ligase [Candidatus Puniceispirillum marinum
           IMCC1322]
          Length = 302

 Score =  315 bits (809), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 122/299 (40%), Positives = 181/299 (60%), Gaps = 5/299 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG +SE  VS  S   C  A   AG+   +++VDR +   LA +KPD  FN LHG
Sbjct: 8   VAVLMGGWTSEASVSRVSASFCGQAARSAGWDAVEVEVDRDIAEKLAEMKPDRCFNALHG 67

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +L ++ IPYTHSG++ASAL+MDK+ +K ++++CG+ V  ++ +   T   
Sbjct: 68  QVGEDGNIQGLLNIMNIPYTHSGLVASALAMDKVLAKMIMTTCGIRVPATLALVEDTHVY 127

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
                  +VIKPL  GSS G++++K     P      S WN   QLL E ++ G ELT  
Sbjct: 128 PEHAMQAHVIKPLNDGSSFGVVIVKDGDKAPA----RSLWNTDTQLLCEPFIPGRELTVA 183

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V+   +L VTEI   ++ FY ++ KY+   S H+LPA IP D+  +    A  A++A GC
Sbjct: 184 VLEGTALCVTEI-TSENSFYDFDAKYAPGGSQHILPADIPEDVTLQACEWAESAYRAFGC 242

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
           RG+ R+D+ ++ ++ ++F LEIN QPGMT  S+ PE A + G +  EL+  ++E A C 
Sbjct: 243 RGVIRADYRWNDVTNQLFMLEINTQPGMTATSLVPEQARFVGMTGEELVNHLLETAQCD 301


>gi|297589853|ref|ZP_06948493.1| D-alanine--D-alanine ligase [Staphylococcus aureus subsp. aureus
           MN8]
 gi|297576981|gb|EFH95695.1| D-alanine--D-alanine ligase [Staphylococcus aureus subsp. aureus
           MN8]
          Length = 393

 Score =  315 bits (809), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 85/339 (25%), Positives = 151/339 (44%), Gaps = 46/339 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           + ++ GG S+E EVS+ + +   +A++   + V  I +         +            
Sbjct: 43  ICIVFGGKSAEHEVSILTAQNVLNAIDKDKYHVDIIYITNDGDWRKQNNITTEIKSTDEL 102

Query: 49  --------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
                                  D  F +LHG  GEDG +Q + E+L++PY  +G+L++A
Sbjct: 103 HLENGEALEISQLLKESSSGQPYDAVFPLLHGPNGEDGTIQGLFEVLDVPYVGNGVLSAA 162

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSL 139
            SMDK+  KQ+    G+P  P I   R   +             ++ P  +KP   GSS+
Sbjct: 163 SSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYEHNILKLVNDKLNYPVFVKPANLGSSI 222

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKS 197
           GI     +  +   + ++  ++   +L+IEQ V+  E+   V+G+   + T     V   
Sbjct: 223 GISKCSNEVELKEGIKEAFQFDR--KLVIEQGVNAREIEVAVLGNDYPEATWPGEVVKDV 280

Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
            FY Y+ KY        +PA +  D+   ++ +A  A +A  C G+ R+DF       ++
Sbjct: 281 AFYDYKSKYKDGKVQLQIPADLDEDVQLTLRNMALEAFKATDCSGLVRADFFVTE-DNQI 339

Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +  E N  PG T  S++P++    G S+ EL+  ++E A
Sbjct: 340 YINETNAMPGFTAFSMYPKLWENMGLSYPELITKLIELA 378


>gi|182625622|ref|ZP_02953392.1| D-alanine--D-alanine ligase [Clostridium perfringens D str.
           JGS1721]
 gi|177909174|gb|EDT71645.1| D-alanine--D-alanine ligase [Clostridium perfringens D str.
           JGS1721]
          Length = 302

 Score =  315 bits (809), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 97/299 (32%), Positives = 164/299 (54%), Gaps = 8/299 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + ++MGGISSEREVSL SG++  + ++   ++VS+I ++    ++      D A   LHG
Sbjct: 3   VGIIMGGISSEREVSLVSGESIFNHIDKEKYEVSKIIINNKRDILEKVKGLDFALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN---RFT 117
            FGEDG VQA L++++IPY+  G L+S+L MDK  SK+V+ +  +     I VN      
Sbjct: 63  KFGEDGTVQAFLDIMDIPYSGCGALSSSLCMDKNLSKKVLKAENIRTAKWITVNSIEEID 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            D    I  P  +KP  GGSS+    + K + I   +++     + ++++IE +V G E+
Sbjct: 123 YDKIEEIGYPVFVKPNNGGSSVATFKVYKKEEIKDAVMEGL--KYDEEVIIESFVKGREI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC +       + EI   K+DFY Y+ KY++  + H+ P ++   +Y EV+ +A    + 
Sbjct: 181 TCPIFNGELFPILEIK-SKADFYDYKQKYAANGAEHL-PVQLEKSLYDEVKEMALKTFEV 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           + C   +R D +        + LE+N  PGMT  S+FP+ A   G S+ + +  ++E +
Sbjct: 239 LKCEVYARVDMIISE-EGVPYILEVNTLPGMTATSLFPQSAESRGISYSKFIDLIIETS 296


>gi|188492212|ref|ZP_02999482.1| D-alanine--D-alanine ligase [Escherichia coli 53638]
 gi|188487411|gb|EDU62514.1| D-alanine--D-alanine ligase [Escherichia coli 53638]
          Length = 364

 Score =  315 bits (809), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 89/348 (25%), Positives = 165/348 (47%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP- 51
           + ++ GG S+E EVSL S K    A++ + F V  + +D+            +L    P 
Sbjct: 6   VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPA 65

Query: 52  ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
                                             D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  HIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLISPPYVIK 131
           P+  S +LASA  MDK  +K+++   G+ + P   + R         + +  +  P  +K
Sbjct: 126 PFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFNTLTRANRHNISFAEVESKLGLPLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  +  ++   + +  +  ++H  ++++EQ + G E+ C V+G+ +   + 
Sbjct: 186 PANQGSSVGVSKVTSEEQYAIAVDLAFEFDH--KVIVEQGIKGREIECAVLGNDNPQAST 243

Query: 192 IA--VPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               V  SDFY+Y+ KY     +  V+PA I  +I  +++ +A  A+Q +GC G++R D 
Sbjct: 244 CGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              P   +V   EIN  PG T +S++P++   +G  + +L+  ++E A
Sbjct: 304 FLTP-ENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350


>gi|75906585|ref|YP_320881.1| D-alanyl-alanine synthetase A [Anabaena variabilis ATCC 29413]
 gi|123610777|sp|Q3MGA0|DDL_ANAVT RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|75700310|gb|ABA19986.1| D-alanine--D-alanine ligase [Anabaena variabilis ATCC 29413]
          Length = 367

 Score =  315 bits (809), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 97/356 (27%), Positives = 164/356 (46%), Gaps = 62/356 (17%)

Query: 1   MAVLMGGISSEREVSLSSGKACASAL----EDAGFKVSQIDVDRSVGLVLAHL------- 49
           + +L GG S E EVS+SS +A ASAL      + +++    + +    +           
Sbjct: 6   VGLLFGGRSGEHEVSISSARAIASALSAGENASKYEILPFYIHKDGRWLAGEAPQQVLKS 65

Query: 50  -----------------------------------KPDLAFNVLHGNFGEDGLVQAILEL 74
                                              + D+ F +LHG  GEDG +Q +L L
Sbjct: 66  GAPLLESSNSSPADNNLVNSQQQTLERWQSPSQVAEVDVWFPILHGPNGEDGTIQGLLTL 125

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM------------DSQH 122
           ++ P+  SG+L SAL MDK+  K      G+P      V R  +            + + 
Sbjct: 126 MQTPFVGSGVLGSALGMDKIAMKMAFEQAGLPQVKYKAVTRAQIWSNPCVFPKLCDEIEA 185

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            +  P  +KP   GSS+GI  ++  Q +   L  ++  N+  ++++E  V   E+ C V+
Sbjct: 186 SLGYPCFVKPANLGSSVGISKVRSRQELEDALDNAA--NYDRRIIVEAGVVAREVECAVL 243

Query: 183 GDASLDVTEIAVP--KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           G+     + +      SDFY YE KY++  +  ++PA IP +I +++Q +A  A  A+  
Sbjct: 244 GNDQPQASTVGEITFNSDFYDYETKYTAGKADLLIPAVIPDEISRQIQDMALQAFAAVDA 303

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            G++R DF +   + +V   EIN  PG T  S++P++ AY+G  F EL+  +V+ A
Sbjct: 304 AGLARVDFFYVEATGEVLINEINTLPGFTATSMYPQLWAYSGIPFPELVDKLVQLA 359


>gi|194432541|ref|ZP_03064827.1| D-alanine--D-alanine ligase A [Shigella dysenteriae 1012]
 gi|194419102|gb|EDX35185.1| D-alanine--D-alanine ligase A [Shigella dysenteriae 1012]
 gi|332085641|gb|EGI90805.1| D-alanine--D-alanine ligase [Shigella dysenteriae 155-74]
          Length = 364

 Score =  315 bits (809), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 88/348 (25%), Positives = 166/348 (47%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP- 51
           + ++ GG S+E EVSL S K    A++ + F V  + +D+            +L    P 
Sbjct: 6   VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPA 65

Query: 52  ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
                                             D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  HIALRPSATTLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLISPPYVIK 131
           P+  S +LASA  MDK  +K+++   G+ + P I + R         + +  +  P  +K
Sbjct: 126 PFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  +  ++   + +  +  ++H  ++++EQ + G E+ C ++G+ +   + 
Sbjct: 186 PANQGSSVGVSKVTSEEQYAIAVDLAFEFDH--KVIVEQGIKGREIECAILGNDNPQAST 243

Query: 192 IA--VPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               V  SDFY+Y+ KY     +  V+PA I  +I  +++ +A  ++Q +GC G++R D 
Sbjct: 244 CGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQSYQTLGCAGMARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              P   +V   EIN  PG T +S++P++   +G  + +L+  ++E A
Sbjct: 304 FLTP-ENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350


>gi|239947809|ref|ZP_04699562.1| D-alanine--D-alanine ligase [Rickettsia endosymbiont of Ixodes
           scapularis]
 gi|239922085|gb|EER22109.1| D-alanine--D-alanine ligase [Rickettsia endosymbiont of Ixodes
           scapularis]
          Length = 321

 Score =  315 bits (809), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 113/297 (38%), Positives = 188/297 (63%), Gaps = 3/297 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +A++ GG+S+E EVSL S +    AL + G++V+ ID+   + + L  +KPD+ FN LHG
Sbjct: 25  VALVAGGMSAECEVSLVSSEGVRKALVELGYRVTFIDMGADIAVRLQEIKPDIVFNCLHG 84

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG +  +L ++ IPYTHSG+L+SAL+ DK+ S+    +  + +  SI+VN+     
Sbjct: 85  TYGEDGCLPGLLNIMRIPYTHSGVLSSALAFDKIHSRSWFLTNNINMVESIVVNKSNDVR 144

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  PYVIKPLK GSS+G+ VI ++ +          + +GDQ++IEQY+ G EL   
Sbjct: 145 NDPMKRPYVIKPLKQGSSIGVEVIFEEDNFNFA---DYDFPYGDQVIIEQYIKGRELQVA 201

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V+   +L   EI + K+ FY YE KY+   + H+ PA +P ++Y+++   +   ++ + C
Sbjct: 202 VLNGKALGALEIKLLKNRFYDYETKYTEGFAEHLCPAPLPANLYEKLLIESEKIYKTMNC 261

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           +G +R++F+ +  + K++ LE+N  PGM P+SI PE+AAYAG +F  L+  +++ AS
Sbjct: 262 KGPARAEFILEEQTNKLYALEMNTHPGMAPLSIVPEIAAYAGINFTNLIEEIIKTAS 318


>gi|323170460|gb|EFZ56110.1| D-alanine--D-alanine ligase [Escherichia coli LT-68]
          Length = 364

 Score =  315 bits (809), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 89/348 (25%), Positives = 166/348 (47%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP- 51
           + ++ GG S+E EVSL S K    A++ + F V  + +D+            +L    P 
Sbjct: 6   VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPA 65

Query: 52  ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
                                             D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  HIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLISPPYVIK 131
           P+  S +LASA  MDK  +K+++   G+ + P I + R         + +  +  P  +K
Sbjct: 126 PFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  +  ++   + +  +  ++H  ++++EQ + G E+ C V+G+ +   + 
Sbjct: 186 PANQGSSVGVSKVTSEEQYAIAVDLAFEFDH--KVIVEQGIKGREIECAVLGNDNPQAST 243

Query: 192 IA--VPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               V  SDFY+Y+ KY     +  V+P+ I  +I  +++ +A  A+Q +GC G++R D 
Sbjct: 244 CGEIVLTSDFYAYDTKYIDEDGAKVVVPSAIAPEINDKIRAIAVQAYQTLGCAGMARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              P   +V   EIN  PG T +S++P++   +G  + +L+  ++E A
Sbjct: 304 FLTP-ENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350


>gi|317455526|pdb|3Q1K|A Chain A, The Crystal Structure Of The D-Alanyl-Alanine Synthetase A
           From Salmonella Enterica Typhimurium Complexed With Adp
 gi|317455527|pdb|3Q1K|B Chain B, The Crystal Structure Of The D-Alanyl-Alanine Synthetase A
           From Salmonella Enterica Typhimurium Complexed With Adp
 gi|317455528|pdb|3Q1K|C Chain C, The Crystal Structure Of The D-Alanyl-Alanine Synthetase A
           From Salmonella Enterica Typhimurium Complexed With Adp
 gi|317455529|pdb|3Q1K|D Chain D, The Crystal Structure Of The D-Alanyl-Alanine Synthetase A
           From Salmonella Enterica Typhimurium Complexed With Adp
          Length = 367

 Score =  315 bits (809), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 85/348 (24%), Positives = 161/348 (46%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50
           + ++ GG S+E EVSL S K    A++   F V  + +D++    +   +          
Sbjct: 9   VGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGIDKAGQWHVNDAENYLQNADDPA 68

Query: 51  ---------------------------------PDLAFNVLHGNFGEDGLVQAILELLEI 77
                                             D+ F ++HG  GEDG +Q  L +  +
Sbjct: 69  HIALRPSAISLAQVPGKHQHQLINAQNGQPLPTVDVIFPIVHGTLGEDGSLQGXLRVANL 128

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR------FTMDSQHLISPPYVIK 131
           P+  S +L+SA   DK  +K+++   G+ + P I + R         + +  +  P  +K
Sbjct: 129 PFVGSDVLSSAACXDKDVAKRLLRDAGLNIAPFITLTRTNRHAFSFAEVESRLGLPLFVK 188

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  +  +      +  +  ++H  ++++EQ + G E+ C V+G+ +   + 
Sbjct: 189 PANQGSSVGVSKVANEAQYQQAVALAFEFDH--KVVVEQGIKGREIECAVLGNDNPQAST 246

Query: 192 IA--VPKSDFYSYELKYSSLN-STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               V  S+FY+Y+ KY   N +  V+PA+IP ++  +++ +A  A+Q +GC G +R D 
Sbjct: 247 CGEIVLNSEFYAYDTKYIDDNGAQVVVPAQIPSEVNDKIRAIAIQAYQTLGCAGXARVDV 306

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                  +V   EIN  PG T +S +P++   +G  + +L+  ++E A
Sbjct: 307 FLTA-DNEVVINEINTLPGFTNISXYPKLWQASGLGYTDLISRLIELA 353


>gi|322433980|ref|YP_004216192.1| D-alanine/D-alanine ligase [Acidobacterium sp. MP5ACTX9]
 gi|321161707|gb|ADW67412.1| D-alanine/D-alanine ligase [Acidobacterium sp. MP5ACTX9]
          Length = 372

 Score =  315 bits (809), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 100/349 (28%), Positives = 167/349 (47%), Gaps = 58/349 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR----------------SVGL 44
           + VL GG S E EVSL S  +   A++   ++V  I + +                  GL
Sbjct: 8   VGVLFGGRSGEHEVSLLSANSILKAIDRKKYEVVPIGITKQGRWLGGDGAKGLLTGDSGL 67

Query: 45  VLAH-----------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87
            L+                     D+ F VLHG FGEDG +Q +LEL ++ Y  SG+L S
Sbjct: 68  TLSASAQVTETGLIEQSGGVIGALDVIFPVLHGTFGEDGTIQGMLELADLAYVGSGVLGS 127

Query: 88  ALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSS 138
           A  MDK   K++ ++ G+P  P + V R    +         +  +  P  +KP   GSS
Sbjct: 128 AAGMDKDVMKKLFAAAGLPQTPYLSVLRSEWKADAKGCRKRIEKALEYPLFVKPANLGSS 187

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-----IELTCGVMGDASLDVTEIA 193
           +GI  +     +   +  ++ ++   +L++EQ V G      EL   V+G+ +L+ + + 
Sbjct: 188 VGISKVHGRDELAAAMDLAAGFDR--KLVVEQGVGGPGAKPRELEVAVLGNETLEASVVG 245

Query: 194 --VPKSDFYSYELKYSSLN---STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
             VP  +FY YE KY       S  ++PAK+     K+++ +A  A +A  C G++R DF
Sbjct: 246 EIVPAKEFYDYEAKYQMNGPDESVCIIPAKLSASEQKQMRAMAMEAFRACDCSGLARVDF 305

Query: 249 LFDPLSR----KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           L +P ++    K +  EIN  PG T +S++P++   +G  + EL+  ++
Sbjct: 306 LMEPAAKGKKAKFYLNEINTMPGFTSISMYPKLWGASGVGYTELIDRLI 354


>gi|294638206|ref|ZP_06716460.1| D-alanine--D-alanine ligase A [Edwardsiella tarda ATCC 23685]
 gi|291088642|gb|EFE21203.1| D-alanine--D-alanine ligase A [Edwardsiella tarda ATCC 23685]
          Length = 409

 Score =  315 bits (809), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 92/352 (26%), Positives = 161/352 (45%), Gaps = 56/352 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44
           + ++ GG S E EVSL S K   +A++   F V  I +D+                    
Sbjct: 47  VGIVFGGKSCEHEVSLQSAKNIVAAIDHTRFDVMLIGIDKQGYWYRCPEHGYLSHEDDPQ 106

Query: 45  --VLAHLKP--------------------------DLAFNVLHGNFGEDGLVQAILELLE 76
              L H                             D+ F ++HG  GEDG +Q +L++L 
Sbjct: 107 HIALNHASAHRLAVLPGAHSGQLIDTVTGESLPSLDVIFPIVHGTQGEDGCLQGMLKILN 166

Query: 77  IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVI 130
           +P+  S I+ SA  MDK   K+++   G+PV P + + R T            +     +
Sbjct: 167 LPFVGSDIIGSAACMDKDICKRLLRDAGLPVTPFVTLTRDTQADYDYETLSRQLGSTLFV 226

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190
           KP   GSS+G+  ++  +     + ++  ++H  +++IE  V G E+ C ++G+ +   +
Sbjct: 227 KPANQGSSVGVSKVRNAEEYARAIAEALRFDH--KVIIELGVVGREIECAILGNEAAQAS 284

Query: 191 EIA--VPKSDFYSYELKYSSL-NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
                +  SDFYSY+ KY S   +  V+PA++  +  + V+++A  A QA+ CRG++R D
Sbjct: 285 VCGEIILHSDFYSYDSKYISAQGAQVVVPAQMTPESSERVRQIALQAFQALECRGLARVD 344

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
                   +V   EIN  PG T +S++P++    G  +  L+  ++E A   
Sbjct: 345 VFLTE-EGEVIINEINTLPGFTNISMYPKLWQACGIDYPTLITRLIEFALAR 395


>gi|161526003|ref|YP_001581015.1| D-alanine--D-alanine ligase [Burkholderia multivorans ATCC 17616]
 gi|189349280|ref|YP_001944908.1| D-alanine--D-alanine ligase [Burkholderia multivorans ATCC 17616]
 gi|221202516|ref|ZP_03575546.1| D-alanine--D-alanine ligase B [Burkholderia multivorans CGD2M]
 gi|221208162|ref|ZP_03581167.1| D-alanine--D-alanine ligase B [Burkholderia multivorans CGD2]
 gi|221213275|ref|ZP_03586250.1| D-alanine--D-alanine ligase B [Burkholderia multivorans CGD1]
 gi|229463736|sp|A9AI94|DDL_BURM1 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|160343432|gb|ABX16518.1| D-alanine--D-alanine ligase [Burkholderia multivorans ATCC 17616]
 gi|189333302|dbj|BAG42372.1| D-alanine-D-alanine ligase [Burkholderia multivorans ATCC 17616]
 gi|221166727|gb|EED99198.1| D-alanine--D-alanine ligase B [Burkholderia multivorans CGD1]
 gi|221172065|gb|EEE04507.1| D-alanine--D-alanine ligase B [Burkholderia multivorans CGD2]
 gi|221177611|gb|EEE10028.1| D-alanine--D-alanine ligase B [Burkholderia multivorans CGD2M]
          Length = 313

 Score =  315 bits (809), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 102/300 (34%), Positives = 155/300 (51%), Gaps = 11/300 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL+SG+     L DAG      D        L       AFN LHG
Sbjct: 12  VAVLFGGESAEREVSLTSGRLVLQGLRDAGVDAHPFDPAERPLSALKDEGFVRAFNALHG 71

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118
            +GE+G +Q  L+   I YT SG+L SAL +DK R+K V    GVP  P   V R     
Sbjct: 72  GYGENGQIQGALDFYGIRYTGSGVLGSALGLDKFRTKLVWQQTGVPTPPFETVMRDDDYA 131

Query: 119 ----DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD- 173
               +    +  P  +KP   GSS+ ++ +K      L    + +  H   +++E+ ++ 
Sbjct: 132 ARATEIVAKLGLPLFVKPASEGSSVAVLKVKTA--DALPAALAEAATHDKIVIVEKSIEG 189

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           G E T  + GD  L + +I VP  +FY Y  KY + ++ +++P  +P D   +++RLA  
Sbjct: 190 GGEYTACIAGDLDLPLIKI-VPAGEFYDYHAKYVADDTQYLIPCGLPADQEAQLKRLARR 248

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           A   +GC    R+DF+ D      ++LE+N  PGMT  S+ P+ A   G S+ EL++ ++
Sbjct: 249 AFDVLGCTDWGRADFMLDAAGNA-YFLEVNTAPGMTDHSLPPKAARAIGISYSELVVKVL 307


>gi|37519866|ref|NP_923243.1| D-alanine--D-alanine ligase [Gloeobacter violaceus PCC 7421]
 gi|39930828|sp|Q7NNW1|DDL_GLOVI RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|35210858|dbj|BAC88238.1| D-alanine--D-alanine ligase [Gloeobacter violaceus PCC 7421]
          Length = 302

 Score =  315 bits (808), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 104/301 (34%), Positives = 165/301 (54%), Gaps = 8/301 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VL G  S EREVSL SG+A  +ALE  G +V+ +D    + + L    PD  +  LHG
Sbjct: 3   ITVLSGSDSPEREVSLVSGRAVQAALETLGHEVTMVDPGPDLPVRLLENPPDFVWIALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
           + GE+G +Q +L+ L +PY  SG+ ASA++MDK+ SK++  + G+P     +       S
Sbjct: 63  DKGENGKLQGLLDWLGLPYNGSGVTASAIAMDKVVSKRLFVAEGIPTPAYRVAEAVPQVS 122

Query: 121 QH-----LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175
           +       +  P V+KP  GGS++G+ + ++   +P  +  +    +  Q+LIEQY+ G 
Sbjct: 123 ECQAWLAALGSPVVVKPADGGSTVGVTIAREAGHLPEAVRLAL--QYSPQVLIEQYIPGQ 180

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
           E+T  ++    L   EI     DFY YE KY+   S H++P  +  D+ K     A+ A 
Sbjct: 181 EITVALLDGLVLPAIEIVPQGRDFYDYEAKYAPGGSRHLIPPNLAADVLKASVDAAYRAC 240

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           +A+G  G+ R+D   DP  R  + LE+N  PGMT  S+ PE A  AG  F +L+  +++ 
Sbjct: 241 RAVGSTGLVRADVRVDPEGR-PWVLEVNTLPGMTATSLAPEAAQAAGIDFEQLIQRIIDR 299

Query: 296 A 296
           +
Sbjct: 300 S 300


>gi|238026134|ref|YP_002910365.1| D-alanine--D-alanine ligase [Burkholderia glumae BGR1]
 gi|237875328|gb|ACR27661.1| D-alanine--D-alanine ligase [Burkholderia glumae BGR1]
          Length = 313

 Score =  315 bits (808), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 103/300 (34%), Positives = 156/300 (52%), Gaps = 11/300 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG+S+EREVSL+SG+     L +AG      D        L       AFN LHG
Sbjct: 12  VAVLFGGVSAEREVSLNSGRLVLQGLREAGIDAHLFDPSERPLSALKDEGFVRAFNALHG 71

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GE+G +Q  L+   I YT  G+L SAL +DK R+K V    G+P  P   V R    +
Sbjct: 72  GYGENGQLQGALDFYGIRYTGPGVLGSALGLDKFRTKLVWQQTGIPTPPFETVMRGDDHA 131

Query: 121 Q------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD- 173
                    +  P  +KP   GSS+ +I +K   ++P  L ++    H   +++E+ ++ 
Sbjct: 132 ARAAEIVAKLGLPLFVKPASEGSSVAVIKVKDAAALPAALDEAG--RHDRIVIVEKSIEG 189

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           G E T  + GD  L V  I VP  +FY Y  KY + ++ +++P  I      E +RLA  
Sbjct: 190 GGEYTACIAGDLDLPVIRI-VPAGEFYDYHAKYLADDTQYLIPCGIEAAKETEFKRLARR 248

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           A + +GC G  R+DF+ D      ++LE+N  PGMT  S+ P+ A   G S+ EL++ ++
Sbjct: 249 AFEVLGCSGWGRADFMLDAAGN-PYFLEVNTAPGMTDHSLPPKAARAVGISYSELVVKVL 307


>gi|221308278|ref|ZP_03590125.1| D-alanyl-alanine synthetase A [Bacillus subtilis subsp. subtilis
           str. 168]
 gi|221312600|ref|ZP_03594405.1| D-alanyl-alanine synthetase A [Bacillus subtilis subsp. subtilis
           str. NCIB 3610]
 gi|221317524|ref|ZP_03598818.1| D-alanyl-alanine synthetase A [Bacillus subtilis subsp. subtilis
           str. JH642]
 gi|221321800|ref|ZP_03603094.1| D-alanyl-alanine synthetase A [Bacillus subtilis subsp. subtilis
           str. SMY]
          Length = 361

 Score =  315 bits (808), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 89/346 (25%), Positives = 151/346 (43%), Gaps = 53/346 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           + ++ GG S+E  VSL +  A   AL    F +  I +      V               
Sbjct: 5   LGLVYGGKSAEHNVSLQTALAVIKALNTEKFDIHPIYITEKGEWVRGARLTEPVSNVKML 64

Query: 47  -------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81
                                     +   D+ F +LHG  GEDG +Q +LELL IPY  
Sbjct: 65  QFEQGGSAFSPAALNQEMFPQEASQQNEAIDVVFPLLHGPNGEDGTIQGMLELLNIPYVG 124

Query: 82  SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKP 132
           +G+LAS+  MDK+  K + +  G+         +            + +  +  P  +KP
Sbjct: 125 NGVLASSAGMDKVVMKHLFAQVGLAQAKYAAFLKKDWTRSPKESCEEVEQELGYPCFVKP 184

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--DVT 190
              GSS+GI   +  + +        ++ +  ++++E+ ++G E+  GV+G+      V 
Sbjct: 185 ANLGSSVGISKCRNREELQKAF--ELAFQYDRKVVVEEGINGREIEIGVLGNDDPKCSVV 242

Query: 191 EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
               PK+DFY Y+ KY   ++  ++PA +  + Y  +  +A  A +AI   G+ R+DF  
Sbjct: 243 GEIAPKTDFYDYKAKYEDGDTDLMIPAIVTDEEYATISDMAIKAFKAIDGSGLVRADFFL 302

Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                +V   E+N  PG TP S+FP +   AG  + +L+  +VE A
Sbjct: 303 TA-DGEVLINEVNTMPGFTPFSMFPLLWKEAGVEYADLIEQLVELA 347


>gi|221133804|ref|ZP_03560109.1| D-alanine-D-alanine ligase B [Glaciecola sp. HTCC2999]
          Length = 321

 Score =  315 bits (808), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 98/301 (32%), Positives = 160/301 (53%), Gaps = 8/301 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +A+L+GG S+EREVSL+SG+A   A++  G +    D  +     L   +   A  +LHG
Sbjct: 6   LAILLGGHSAEREVSLASGEAVFKAVQALGIECIAFDPKQHPLTKLIDEQVTHAMIMLHG 65

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN-----R 115
             GEDG +Q  LE L IPYT SG+L SA++MDK+ +K V  +CG+P      +       
Sbjct: 66  RGGEDGTIQGALEWLNIPYTGSGVLGSAIAMDKLHTKHVWQACGLPTAKYTEIKAPISVD 125

Query: 116 FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175
                   I P  ++KP   GSS+G+      + +   +  +++  + +++LIEQY+ G 
Sbjct: 126 EAQTIMLNIGPDLMVKPSHEGSSIGMSKTGTAEELISAV--NTALTYDERVLIEQYIVGT 183

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
           E T  ++G+ +L    +  P + FY YE KY +  + +  P+ +     + + +L+  A 
Sbjct: 184 EYTVSILGENALPSISMVTP-NIFYDYEAKYQTNTTQYHCPSDLNDIDERVIGQLSLDAF 242

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           +A+ C G  R D + D  + +   LE+N  PGMT  S+ P+ A  AGY F EL+  ++  
Sbjct: 243 KAVSCNGWGRVDLMRDQKTDEFILLEVNTVPGMTAKSLVPKAAKQAGYDFNELVKQILVS 302

Query: 296 A 296
           A
Sbjct: 303 A 303


>gi|118602742|ref|YP_903957.1| D-alanine--D-alanine ligase [Candidatus Ruthia magnifica str. Cm
           (Calyptogena magnifica)]
 gi|190359230|sp|A1AX29|DDL_RUTMC RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|118567681|gb|ABL02486.1| D-alanine--D-alanine ligase [Candidatus Ruthia magnifica str. Cm
           (Calyptogena magnifica)]
          Length = 293

 Score =  315 bits (808), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 103/295 (34%), Positives = 149/295 (50%), Gaps = 4/295 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG S+ER VSL SG+A   AL +      + D        L   + D AF VLHG
Sbjct: 2   IAVLMGGNSAERAVSLKSGEAVYQALINQNINCFEFDWHGYNLSELWQQEFDQAFIVLHG 61

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q  LE   I YT S   AS   +DK R+K +     + + PSI+ +      
Sbjct: 62  RGGEDGYIQKQLENRCIRYTGSDSNASHNGIDKARTKIIWKQHNLTLAPSIVASIHKPIE 121

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
                 P+++KP   GSS+GI  +  D  I L+     +W +    LIEQ+++G E T  
Sbjct: 122 PIDFPLPWMVKPTLEGSSIGISKV--DSQIQLNNALMLAWQYNSHALIEQWIEGDEYTVA 179

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           ++GD +L V +I      FY YE KY S    ++ P  +     + +Q +A  A  AI  
Sbjct: 180 ILGDKALPVVKIIT-DQGFYDYESKYHSNKIQYLCPCGLSSSQEQVLQVIALKAFFAINA 238

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           +G  R DF+ +    K + LEIN  PGMT  S+ P  A   G SF +L++ ++ +
Sbjct: 239 KGWGRVDFIINQH-NKPYLLEINTVPGMTSHSLVPMAAKAMGMSFNKLVVAIINE 292


>gi|71066304|ref|YP_265031.1| D-alanine--D-alanine ligase [Psychrobacter arcticus 273-4]
 gi|71039289|gb|AAZ19597.1| D-alanine--D-alanine ligase [Psychrobacter arcticus 273-4]
          Length = 366

 Score =  315 bits (808), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 100/296 (33%), Positives = 156/296 (52%), Gaps = 8/296 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AV+ GG S+ER VSL SG A   AL++ G   +  D        L   + D  FNVLHG
Sbjct: 72  VAVIYGGNSNERSVSLDSGAAVLQALQNQGVDATHFDPKHQDITELR--QYDRVFNVLHG 129

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDGL+Q +L+  +IP T SGILASAL MDK+R+KQ+   CG+   P  ++   T   
Sbjct: 130 RGGEDGLLQGVLQWFDIPQTGSGILASALGMDKVRTKQLWQGCGLSTAPFSILTAETDWQ 189

Query: 121 Q--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           Q  +++  P +IKP+  GSS+G+  +     +P     +     GD ++ E+++ G E T
Sbjct: 190 QIVNMLGLPLIIKPVHEGSSIGMTKVSHLDELPAAYATAI--QCGDVVMAERWITGREFT 247

Query: 179 CGVMGDASLDVTEIAVPK-SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
             ++ D +  V  +     ++FY +E KY+  ++++ +P  +     K +Q L+  A +A
Sbjct: 248 IVIIDDEAYPVIRLEPADITNFYDFEAKYNRNDTSYYIPCGLSAIDEKHLQALSLSAFRA 307

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +  +G  R D + D      + LEIN  PGMT  S+ P  A   G  F  L   ++
Sbjct: 308 VEAKGWGRIDAMQDEAGN-FWLLEINTVPGMTSHSLVPMAAKARGIDFESLCWHIL 362


>gi|123443414|ref|YP_001007387.1| D-alanine--D-alanine ligase A [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122090375|emb|CAL13243.1| D-alanine--D-alanine ligase A [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 366

 Score =  315 bits (808), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 91/348 (26%), Positives = 159/348 (45%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP- 51
           + V+ GG S+E EVSL S K    A++   F V+ + +D+            +L    P 
Sbjct: 6   VGVIFGGKSAEHEVSLQSAKNIVDAIDKEKFDVTLLGIDKQGKWHVNDASNYLLNAENPA 65

Query: 52  ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
                                             D+ F ++HG  GEDG +Q +L +  I
Sbjct: 66  LISLNHSNKNVALIPGQEHQQLIATDSASALAQLDVIFPIVHGTLGEDGSLQGLLRMANI 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVIK 131
           P+  SG++ SA+SMDK  +K+++   G+ + P I + R   D+         +  P  IK
Sbjct: 126 PFVGSGVVGSAVSMDKDITKRLLRDAGLNIAPFITLTRANKDNYRFEQVTAKLGLPLFIK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  ++        +  +  ++H  ++L+E  + G E+ C VMG+ +   + 
Sbjct: 186 PANQGSSVGVSKVRNAYEYEQAVALAFDFDH--KVLVESAIVGREIECAVMGNDNPQASL 243

Query: 192 I--AVPKSDFYSYELKYSSL-NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               V   +FYSY+ KY +   +  ++PA I   +   ++ +A  A +A+ CRG++R D 
Sbjct: 244 CGEVVISDEFYSYDTKYINETGAKVIIPASIDSAVSDNIRAVALAAFRALECRGMARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                   +   EIN  PG T +S++P++    G    EL+  ++E A
Sbjct: 304 FLTA-DNTIIINEINTLPGFTNISMYPKLWRATGVGSTELITTLIELA 350


>gi|42779346|ref|NP_976593.1| D-alanyl-alanine synthetase A [Bacillus cereus ATCC 10987]
 gi|42735261|gb|AAS39201.1| D-alanine--D-alanine ligase [Bacillus cereus ATCC 10987]
          Length = 361

 Score =  315 bits (808), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 91/345 (26%), Positives = 156/345 (45%), Gaps = 52/345 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           + +L GG S+E +VSL +  A   AL    F++  I +      V               
Sbjct: 6   LGLLYGGKSAEHQVSLQTALAAIKALNQDKFEIHPIYITEQGQWVRGERIEGEVTDVEVL 65

Query: 46  -----------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
                                        D+ F +LHG  GEDG VQ +LEL+ IPY  +
Sbjct: 66  KMSGAENAISPLSLSTEIIPSTNAEENAIDVIFPLLHGPNGEDGTVQGLLELMNIPYVGN 125

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPL 133
           G+LASA  MDK+  K + +  G+         R   +          + ++  P  +KP 
Sbjct: 126 GVLASAAGMDKVVMKNIFAEAGLKQAKYASFIRSAWEKDRETAYEKVEEVLGYPCFVKPA 185

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--DVTE 191
             GSS+GI   K  + +     ++  ++   ++++E+ + G E+  GV+G+      V  
Sbjct: 186 NLGSSVGINKCKNREELENAFEEAFQFDR--KIIVEENIVGREVEVGVLGNDEPKCSVVG 243

Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
             VPK DFY Y+ KY   ++  ++PA++  +    ++R A +A Q++   G++R+DF   
Sbjct: 244 EIVPKKDFYDYKSKYIDGDTALIIPAEMTEEESNVIKRDAIVAFQSLDGAGLTRADFFLT 303

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
               +V+  E+N  PG TP S+FP +  + G  + EL+  ++  A
Sbjct: 304 K-DGEVYINEVNTMPGFTPFSMFPLLWQHTGLPYPELIEELIRLA 347


>gi|17228475|ref|NP_485023.1| D-alanyl-alanine synthetase A [Nostoc sp. PCC 7120]
 gi|22095559|sp|Q8YY71|DDL_ANASP RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|17130326|dbj|BAB72937.1| D-alanyl-D-alanine ligase [Nostoc sp. PCC 7120]
          Length = 364

 Score =  315 bits (808), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 98/356 (27%), Positives = 164/356 (46%), Gaps = 62/356 (17%)

Query: 1   MAVLMGGISSEREVSLSSGKACASAL----EDAGFKVSQIDVDRSVGLVLAHL------- 49
           + +L GG S E EVS+SS +A ASAL      + +++    + +    +           
Sbjct: 3   VGLLFGGRSGEHEVSISSARAIASALSAGENASKYEILPFYIHKDGRWLAGEAPQQVLKS 62

Query: 50  -----------------------------------KPDLAFNVLHGNFGEDGLVQAILEL 74
                                              + D+ F +LHG  GEDG +Q +L L
Sbjct: 63  GAPLLESSNSSPAENNLVNSQQQTLERWQSPSQVAEVDVWFPILHGPNGEDGTIQGLLTL 122

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM------------DSQH 122
           ++ P+  SG+L SAL MDK+  K      G+P      V R  +            + + 
Sbjct: 123 MQTPFVGSGVLGSALGMDKIAMKMAFEQAGLPQVKYKAVTRAQIWSNPCVFPKLCDEIEA 182

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            +  P  +KP   GSS+GI  ++  Q +   L  ++  N+  +++IE  V   E+ C V+
Sbjct: 183 SLGYPCFVKPANLGSSVGISKVRSRQELEDALDNAA--NYDRRIIIEAGVAAREVECAVL 240

Query: 183 GDASLDVTEIAVP--KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           G+     + +      SDFY YE KY++  +  ++PA IP DI +++Q +A  A  A+  
Sbjct: 241 GNDQPQASTVGEITFNSDFYDYETKYTAGKADLLIPAIIPDDISRQIQNMALQAFAAVDA 300

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            G++R DF +   + +V   EIN  PG T  S++P++ A++G  F EL+  +V+ A
Sbjct: 301 AGLARVDFFYVEATGEVLINEINTLPGFTATSMYPQLWAHSGIPFPELVDKLVQLA 356


>gi|325289877|ref|YP_004266058.1| D-alanine--D-alanine ligase [Syntrophobotulus glycolicus DSM 8271]
 gi|324965278|gb|ADY56057.1| D-alanine--D-alanine ligase [Syntrophobotulus glycolicus DSM 8271]
          Length = 360

 Score =  315 bits (808), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 96/343 (27%), Positives = 157/343 (45%), Gaps = 56/343 (16%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL------------------ 44
           V+ GG S E EVSL S  +   AL+   +++  + + +                      
Sbjct: 8   VIFGGESGEHEVSLVSAASVIQALDKEKYEILTVGITKKGQWYWGIDPQTWKLNNGTVSS 67

Query: 45  -----------------------VLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81
                                  +    K DL F VLHG  GEDG +Q + E+  +PY  
Sbjct: 68  HDVQVTLVTDPANPRFIPVSGNTLPGDGKFDLIFPVLHGPKGEDGTIQGLFEIAGVPYVG 127

Query: 82  SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH---------LISPPYVIKP 132
           SG+L  AL MDK R K V +  G+P+ P I V +  +D+            +S P  +KP
Sbjct: 128 SGVLGGALGMDKDRMKAVFAQAGLPIVPHITVLKNQIDNDPDSIRTKVMTELSFPVFVKP 187

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192
              GSS+GI  + ++  +   L  +++  + D+++IEQ V   E+   V+G+ +   T  
Sbjct: 188 ANLGSSVGITKVSRESDLGQALKLAAA--YDDKVVIEQGVKAREIELAVLGNETPQATVP 245

Query: 193 A--VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
              +P  +FY YE KY   +S  ++PA++      ++Q  A    QA+   G+ R DF  
Sbjct: 246 GEIIPCKEFYDYEAKY-IDDSKLIIPAQLNKKTVNKLQEYAVTVFQAVDASGLGRVDFFV 304

Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
              + ++F  EIN  PG T +S++P++    G S+ ELL  ++
Sbjct: 305 T-DTEEIFVNEINTLPGFTNISMYPKLWEATGVSYPELLNRLI 346


>gi|303328301|ref|ZP_07358739.1| D-alanine--D-alanine ligase B [Desulfovibrio sp. 3_1_syn3]
 gi|302861631|gb|EFL84567.1| D-alanine--D-alanine ligase B [Desulfovibrio sp. 3_1_syn3]
          Length = 303

 Score =  315 bits (808), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 103/302 (34%), Positives = 158/302 (52%), Gaps = 5/302 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-DRSVGLVLAHLKPDLAFNVLH 59
           + ++ GG SSEREVSL+  +  A AL   G  V+  D+      L+    + D A   LH
Sbjct: 3   ILLIAGGWSSEREVSLNGARGMAEALRALGHSVTFFDLLTEFDQLLPQAREHDFALINLH 62

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT-M 118
           G  GEDGLVQA+L+ +  PY  +G   S L+++K  +KQ+    G+P      +      
Sbjct: 63  GAPGEDGLVQAMLDRVGCPYQGAGPAGSFLALNKAAAKQLFRHAGLPTADWEFLPCPPPA 122

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           D Q  +  P  +K   GGSSL +   +    +  D++ +  +  GD+ LIE  + G E+T
Sbjct: 123 DWQPRLPYPLFVKSNTGGSSLRLGRARDRAEL--DMVLAEIFAAGDEALIEPELKGREVT 180

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           CG++G+ +L    I     DF+ YE KY++  +  + PA I  ++   V+ LA  AH+A+
Sbjct: 181 CGILGEEALPPILIEPVAGDFFDYESKYATGGAREICPAPIAPELTDRVRELALAAHRAL 240

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           G RG SR+DF+ D   + +  LE+N  PGMT  S+ P+ A   G  F  LL  ++E    
Sbjct: 241 GLRGYSRADFILDA-DQNLTLLEVNTLPGMTSTSLVPQEAKVIGLDFGRLLERLMELGMA 299

Query: 299 LR 300
            R
Sbjct: 300 RR 301


>gi|315925513|ref|ZP_07921723.1| D-alanine-D-alanine ligase [Pseudoramibacter alactolyticus ATCC
           23263]
 gi|315621054|gb|EFV01025.1| D-alanine-D-alanine ligase [Pseudoramibacter alactolyticus ATCC
           23263]
          Length = 353

 Score =  315 bits (808), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 90/339 (26%), Positives = 152/339 (44%), Gaps = 44/339 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           + V+ GG S E EV+  S      A++   + V+ I + +    ++              
Sbjct: 7   LGVVFGGQSGEHEVARVSAYNVLQAVDRTKYDVTTIGITKDGRWLIYTGDWDKLPDGSWQ 66

Query: 47  ----------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
                           A    D+ F ++HG  GEDG +Q + E++  PY   G+LASA+ 
Sbjct: 67  EDTGHLREDFSLLTDPAIRAIDVFFPIMHGPMGEDGTIQGVFEMMGKPYVGCGVLASAVG 126

Query: 91  MDKMRSKQVVSSCGVPVCPSILVNRFTMD--------SQHLISPPYVIKPLKGGSSLGII 142
           MDK+ SK +    G+PV P    +             S   +  P  IKP+  GSS+GI 
Sbjct: 127 MDKVVSKILFEKAGIPVVPYRAFHAADWQRDQAVQITSAETLGYPLFIKPVNMGSSVGIT 186

Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL---DVTEIAVPKSDF 199
                  +   + Q+   N+  ++L+E ++D  E+ C V+ +       +    V   +F
Sbjct: 187 KAHDRAELIAGVHQAL--NYDSKILVETFIDAREIECAVLEEQGHIQTTLPGEVVASKEF 244

Query: 200 YSYELKYSSL-NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
           Y YE KY+   +S   +PA+I      +++  A  A  AI   G+SR DF  D    +++
Sbjct: 245 YDYEAKYADDQDSKIEIPAQIDDATTAQIRDFAAKAFAAIDGSGLSRVDFFVDNRDGRLY 304

Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
             E+N  PG T +S++P M  + G S+ EL+  ++  A+
Sbjct: 305 INEVNTLPGFTDISMYPMMWQHMGVSYAELVERLIATAA 343


>gi|158336262|ref|YP_001517436.1| D-alanyl-alanine synthetase A [Acaryochloris marina MBIC11017]
 gi|190359103|sp|B0CEL5|DDL_ACAM1 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|158306503|gb|ABW28120.1| D-alanine--D-alanine ligase [Acaryochloris marina MBIC11017]
          Length = 352

 Score =  315 bits (808), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 99/341 (29%), Positives = 166/341 (48%), Gaps = 47/341 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDA----GFKVSQIDVDRSVGL--------VLAH 48
           + ++ GG S E EVS++S KA   AL+ A     ++V    + ++           VL  
Sbjct: 6   VGLVFGGCSGEHEVSITSAKAVCGALQTAPNPDKYEVIPFYIHKNGCWQAGEVANQVLEM 65

Query: 49  LKP-------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
            KP                   D+ F +LHG  GEDG +Q +L+L+++PY  SG+L SA 
Sbjct: 66  GKPQDQAEEGSRWHFPEAAASIDVWFPILHGPNGEDGTIQGLLQLMQVPYVGSGVLGSAA 125

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ------------HLISPPYVIKPLKGGS 137
            MDK+  K V ++ G+P      V R  + S               I  P  +KP   GS
Sbjct: 126 GMDKIAMKTVFAAAGLPQVKYESVTREQVWSDPCVFKQVCDRIDETIGYPNFVKPANLGS 185

Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP-- 195
           S+GI  ++    +   L  ++S++   ++++E  V   E+ C V+G+     + +     
Sbjct: 186 SVGISKVRSRLELEAALDSAASFDR--RIVVEAGVVAREVECAVLGNGRPRASVVGEISF 243

Query: 196 KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255
            SDFY YE KY+   ++  +PA +P DI +++Q +A  A  A+   G+SR DF +   + 
Sbjct: 244 DSDFYDYETKYTEGRASLQIPAPLPADITEKIQEMAINAFIAVDAAGLSRVDFFYVESTG 303

Query: 256 KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +V   EIN  PG T  S++P + + +G  F +L+  +++ A
Sbjct: 304 EVLINEINTLPGFTSTSMYPMLWSVSGVDFPKLVDRLIQLA 344


>gi|308067503|ref|YP_003869108.1| D-alanine--D-alanine ligase [Paenibacillus polymyxa E681]
 gi|305856782|gb|ADM68570.1| D-alanine--D-alanine ligase [Paenibacillus polymyxa E681]
          Length = 362

 Score =  315 bits (808), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 85/342 (24%), Positives = 145/342 (42%), Gaps = 48/342 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLA------------- 47
           + ++ GG S E EVSL +  A  +A     +++    + ++                   
Sbjct: 8   VGLVYGGKSGEHEVSLQTAYAVMNAFNYEKYEIIPFYITKAGDWRRGALLSAPLASVDQL 67

Query: 48  ----------------------HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
                                     D+ F +LHG FGEDG +Q + E+ ++PY  +G+L
Sbjct: 68  KLERAEGGTKAALDTLFGKLYGEQTLDVLFPLLHGTFGEDGTIQGLFEMADMPYVGAGVL 127

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGG 136
           ASA  MDK   K++    G+P       N               +  +  P  +KP   G
Sbjct: 128 ASAAGMDKGVMKKLFEHAGLPQVKYCYFNSTQWAQTSHDLVRNMETELGYPCFVKPANLG 187

Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--DVTEIAV 194
           SS+GI      + +   +  +  ++   ++++E+YVD  E+   V+G+      V    V
Sbjct: 188 SSVGISKANNREELEKAVDLALQFDL--KVIVEEYVDAREIEVSVLGNDEPIASVPGEIV 245

Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
             SD+Y Y  KY+   S  ++PA +  ++   ++  A  A +A+   GISR+DF      
Sbjct: 246 SSSDYYDYAAKYTDGQSEMLIPAPLDEEVADRIREAALQAFRALEGCGISRADFFVRRSD 305

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             +   E+N  PG TP S++P +    G S+  LL  M+  A
Sbjct: 306 GHILINEVNTMPGFTPFSMYPLLWRETGVSYASLLDRMIALA 347


>gi|262049252|ref|ZP_06022127.1| D-alanylalanine synthetase [Staphylococcus aureus D30]
 gi|259162617|gb|EEW47184.1| D-alanylalanine synthetase [Staphylococcus aureus D30]
          Length = 356

 Score =  315 bits (808), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 85/339 (25%), Positives = 151/339 (44%), Gaps = 46/339 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           + ++ GG S+E EVS+ + +   +A++   + V  I +         +            
Sbjct: 6   ICIVFGGKSAEHEVSILTAQNVLNAIDKDKYHVDIIYITNDGDWRKQNNITAEIKSTDEL 65

Query: 49  --------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
                                  D  F +LHG  GEDG +Q + E+L++PY  +G+L++A
Sbjct: 66  HLENGEALEISQLLKESSSGQPYDAVFPLLHGPNGEDGTIQGLFEVLDVPYVGNGVLSAA 125

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSL 139
            SMDK+  KQ+    G+P  P I   R   +             ++ P  +KP   GSS+
Sbjct: 126 SSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYEHNILKLVNDKLNYPVFVKPANLGSSV 185

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKS 197
           GI     +  +   + ++  ++   +L+IEQ V+  E+   V+G+   + T     V   
Sbjct: 186 GISKCNNEAELKEGIKEAFQFDR--KLVIEQGVNAREIEVAVLGNDYPEATWPGEVVKDV 243

Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
            FY Y+ KY        +PA +  D+   ++ +A  A +A  C G+ R+DF       ++
Sbjct: 244 AFYDYKSKYKDGKVQLQIPADLDEDVQLTLRNMALEAFKATDCSGLVRADFFVTE-DNQI 302

Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +  E N  PG T  S++P++    G S+ EL+  ++E A
Sbjct: 303 YINETNAMPGFTAFSMYPKLWGNMGLSYPELITKLIELA 341


>gi|229028082|ref|ZP_04184233.1| D-alanine--D-alanine ligase [Bacillus cereus AH1271]
 gi|228733235|gb|EEL84066.1| D-alanine--D-alanine ligase [Bacillus cereus AH1271]
          Length = 361

 Score =  315 bits (808), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 92/348 (26%), Positives = 157/348 (45%), Gaps = 52/348 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           + +L GG S+E +VSL +  A   AL    F++  I +      V               
Sbjct: 6   LGLLYGGKSAEHQVSLQTALAAIKALNQDKFEIHPIYITEQGQWVRGERIEGEVTDVEVL 65

Query: 47  ------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
                                        D+ F +LHG  GEDG VQ +LEL+ IPY  +
Sbjct: 66  KMSGAENAISPLSLSTEIIPSAASEENAIDVIFPLLHGPNGEDGTVQGLLELMNIPYVGN 125

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPL 133
           G+LASA  MDK+  K + +  G+         R T +          + ++  P  +KP 
Sbjct: 126 GVLASAAGMDKVVMKNIFAEAGLKQAKYASFIRSTWEKDCETAYEKVEEVLGYPCFVKPA 185

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--DVTE 191
             GSS+GI   K  + +     ++  ++   ++++E+ + G E+  GV+G+      V  
Sbjct: 186 NLGSSVGINKCKNREELENAFEEAFQFDR--KIIVEENIIGREVEVGVLGNDEPKCSVVG 243

Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
             VPK DFY Y+ KY   ++  ++PA++  +    ++R A +A Q++   G++R+DF   
Sbjct: 244 EIVPKKDFYDYKSKYIDGDTALIIPAEMTEEESNVIKRDAIIAFQSLDGAGLTRADFFLT 303

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
               +V+  E+N  PG TP S+FP +  + G  + EL+  ++  A   
Sbjct: 304 K-DGEVYINEVNTMPGFTPFSMFPLLWQHTGLPYPELIEELINLAIAR 350


>gi|254416646|ref|ZP_05030397.1| D-ala D-ala ligase N-terminal domain protein, putative [Microcoleus
           chthonoplastes PCC 7420]
 gi|196176612|gb|EDX71625.1| D-ala D-ala ligase N-terminal domain protein, putative [Microcoleus
           chthonoplastes PCC 7420]
          Length = 349

 Score =  315 bits (808), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 95/341 (27%), Positives = 162/341 (47%), Gaps = 47/341 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASAL----EDAGFKVSQIDVDRSVGLV----------- 45
           + +L GG S E EVS+ S +A A AL        ++V  I + +                
Sbjct: 6   IGLLFGGRSGEHEVSICSAQAIAKALSTPPNTEKYEVLPIYIQKDGIWQPPDIAHQVLAS 65

Query: 46  -----------LAHLKPDLA-----FNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
                      L    P +A     F +LHG  GEDG +Q +L L+++P   SG+L SA+
Sbjct: 66  GTPLEANGEGNLWQFPPQVADVEVWFPILHGPNGEDGTIQGLLTLMQVPCVGSGVLGSAM 125

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------------QHLISPPYVIKPLKGGS 137
           +MDK+  KQV    G+       ++R  + S            +  +  P  +KP   GS
Sbjct: 126 AMDKIAMKQVFDQVGLAQVKHKGLSRAQVWSNPCVFPKLCDQIEETLGYPCFVKPANLGS 185

Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK- 196
           S+GI  ++    +   L  ++S++   ++++E  V   E+ C V+G+ +   + +     
Sbjct: 186 SVGIAKVRSRSELETALDSAASYDR--RIIVEAGVVAREVECAVLGNDNPKASVVGEISY 243

Query: 197 -SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255
            SDFY YE KY+   +T  +PA +P  + +++Q +A  A  A+   G+SR DF +   + 
Sbjct: 244 TSDFYDYETKYTEGRATLSIPAPLPDSVSRQIQEMALQAFAAVDAAGLSRVDFFYVEATG 303

Query: 256 KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +V   E+N  PG T  S++P++ A  G  F +L+  ++E A
Sbjct: 304 EVLINEVNTLPGFTATSMYPQLWAATGVPFPQLVDQLIELA 344


>gi|254723573|ref|ZP_05185360.1| D-alanyl-alanine synthetase A [Bacillus anthracis str. A1055]
          Length = 377

 Score =  315 bits (808), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 90/345 (26%), Positives = 156/345 (45%), Gaps = 52/345 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           + +L GG S+E +VSL +  A   AL    F++  I +      +               
Sbjct: 6   LGLLYGGKSAEHQVSLQTALAAIKALNQDKFEIHPIYITEQGQWIRGERIEGEVANVEVL 65

Query: 46  -----------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
                                        D+ F +LHG  GEDG VQ +LEL+ IPY  +
Sbjct: 66  KMSGAENAISPLSLSTEIIPSANAEENAIDVIFPLLHGPNGEDGTVQGLLELMNIPYVGN 125

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPL 133
           G+LASA  MDK+  K + +  G+         R   +          + ++  P  +KP 
Sbjct: 126 GVLASAAGMDKVVMKNIFAEAGLKQAKYASFIRSGWEKDRETAYEKVEEVLGYPCFVKPA 185

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--DVTE 191
             GSS+GI   K  + +     ++  ++   ++++E+ + G E+  GV+G+      V  
Sbjct: 186 NLGSSVGINKCKNREELENAFEEAFQFDR--KIIVEENIIGREVEVGVLGNDEPKCSVVG 243

Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
             VPK DFY Y+ KY   ++  ++PA++  +    ++R A +A Q++   G++R+DF   
Sbjct: 244 EIVPKKDFYDYKSKYIDGDTALIIPAEMTEEESNVIKRDAIVAFQSLDGAGLTRADFFLT 303

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
               +V+  E+N  PG TP S+FP +  + G  + EL+  ++  A
Sbjct: 304 K-DGEVYINEVNTMPGFTPFSMFPLLWQHTGLPYPELIEELIRLA 347


>gi|119489841|ref|ZP_01622596.1| D-alanylalanine synthetase [Lyngbya sp. PCC 8106]
 gi|119454269|gb|EAW35420.1| D-alanylalanine synthetase [Lyngbya sp. PCC 8106]
          Length = 364

 Score =  315 bits (808), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 92/351 (26%), Positives = 166/351 (47%), Gaps = 57/351 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDA----GFKVSQIDVDRSVGLVLAHL------- 49
           + +L GG S E EVS+ S +A A AL+       +++  + + +        +       
Sbjct: 6   VGLLFGGRSGEHEVSIRSAQAIAKALKSDQNASKYELLPVYIGKDGVWQKGEIAQQIIAS 65

Query: 50  ------------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPY 79
                                         + ++ F +LHG  GEDG +Q +L L+++P+
Sbjct: 66  GEPLYLTDEKTTSTDLVPSPSLLPDPTNFAEIEVWFPILHGPNGEDGTIQGLLTLMQVPF 125

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM------------DSQHLISPP 127
             SG+L SA+ MDK+  K + S  G+      +V R  +            + +  +  P
Sbjct: 126 VGSGVLGSAVGMDKIAMKMIFSQAGLSQVKYKMVTRSQIWSNPCVFPKLCDELELELGYP 185

Query: 128 YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL 187
             +KP   GSS+GI  ++    +   L  ++S++   ++++E  V+  EL C V+G+ + 
Sbjct: 186 CFVKPANLGSSVGISKVRSRAELETALDNAASYDR--RIIVEAGVEARELECAVLGNDTP 243

Query: 188 DVTEIAVP--KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
             + +      SDFY YE KY++  +   +PAK+  +I  +V+ +A  A  A+   G++R
Sbjct: 244 QASTVGEITFASDFYDYETKYTAGQADLFIPAKVSDNIANQVKEMAVKAFLAVDAAGLAR 303

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            DF +   + +V   EIN  PG T  S++P++ A +G SF EL+  +V+ A
Sbjct: 304 VDFFYVEKTGEVLINEINTLPGFTATSMYPQLWAASGISFSELVDRLVQLA 354


>gi|229154005|ref|ZP_04282134.1| D-alanine--D-alanine ligase [Bacillus cereus ATCC 4342]
 gi|228629526|gb|EEK86224.1| D-alanine--D-alanine ligase [Bacillus cereus ATCC 4342]
          Length = 361

 Score =  315 bits (807), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 91/345 (26%), Positives = 156/345 (45%), Gaps = 52/345 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           + +L GG S+E +VSL +  A   AL    F++  I +      V               
Sbjct: 6   LGLLYGGKSAEHQVSLQTALAAIKALNQDKFEIHPIYITEQGQWVRGERIEGEVTDVEVL 65

Query: 46  -----------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
                                        D+ F +LHG  GEDG VQ +LEL+ IPY  +
Sbjct: 66  KMSGAENAISPLSLSTEIIPSANAEENAIDVIFPLLHGPNGEDGTVQGLLELMNIPYVGN 125

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPL 133
           G+LASA  MDK+  K + +  G+         R   +          + ++  P  +KP 
Sbjct: 126 GVLASAAGMDKVVMKNIFAEAGLKQAKYASFIRSAWEKNRETAYEKVEEVLGYPCFVKPA 185

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--DVTE 191
             GSS+GI   K  + +     ++  ++   ++++E+ + G E+  GV+G+      V  
Sbjct: 186 NLGSSVGINKCKNREELENAFEEAFQFDR--KIIVEENIVGREVEVGVLGNDEPKCSVVG 243

Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
             VPK DFY Y+ KY   ++  ++PA++  +    ++R A +A Q++   G++R+DF   
Sbjct: 244 EIVPKKDFYDYKSKYIDGDTALIIPAEMTEEESNVIKRDAIVAFQSLDGAGLTRADFFLT 303

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
               +V+  E+N  PG TP S+FP +  + G  + EL+  ++  A
Sbjct: 304 K-DGEVYINEVNTMPGFTPFSMFPLLWQHTGLPYPELIEELIRLA 347


>gi|168786212|ref|ZP_02811219.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str. EC869]
 gi|261223856|ref|ZP_05938137.1| D-alanine-D-alanine ligase A [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261256064|ref|ZP_05948597.1| D-alanine-D-alanine ligase A [Escherichia coli O157:H7 str.
           FRIK966]
 gi|189373636|gb|EDU92052.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str. EC869]
          Length = 364

 Score =  315 bits (807), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 90/348 (25%), Positives = 165/348 (47%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP- 51
           + ++ GG S+E EVSL S K    A++ + F V  + +D+            +L    P 
Sbjct: 6   VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPA 65

Query: 52  ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
                                             D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  HIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLISPPYVIK 131
           P+  S +LASA  MDK  +K+++   G+ + P I + R         + +  +  P  +K
Sbjct: 126 PFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  +  ++   + +  +  ++H  ++++EQ   G E+ C V+G+ +   + 
Sbjct: 186 PANQGSSVGVSKVTSEEQYAIAVDLAFEFDH--KVIVEQGFKGREIECAVLGNDNPQAST 243

Query: 192 IA--VPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               V  SDFY+Y+ KY     +  V+PA I  +I  +++ +A  A+Q +GC G++R D 
Sbjct: 244 CGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              P   +V   EIN  PG T +S++P++   +G  + +L+  ++E A
Sbjct: 304 FLTP-ENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350


>gi|78059985|ref|YP_366560.1| D-alanine--D-alanine ligase [Burkholderia sp. 383]
 gi|77964535|gb|ABB05916.1| D-alanine--D-alanine ligase [Burkholderia sp. 383]
          Length = 342

 Score =  315 bits (807), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 99/326 (30%), Positives = 157/326 (48%), Gaps = 37/326 (11%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------------------- 40
           +AVL GG S ER+VS+SS      AL  AG  V  ID  R                    
Sbjct: 8   IAVLFGGASEERDVSISSAAQVIKALRSAGHSVVAIDTARGPLSPEEDALLLTSRIHDAP 67

Query: 41  --------------SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
                          +       + D+AF  LHG  GEDG +QA+L+L  +PYT SG + 
Sbjct: 68  PPSRVSTRSPSAAFDLLRCRELTEADVAFLALHGGTGEDGTIQAMLDLAGVPYTGSGHMG 127

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           SA++M+K  +K++ SS G+     +++     D    +  P ++KP + GS++G+ ++  
Sbjct: 128 SAIAMNKDMTKRLFSSVGIRTPRWMMLPCDFDDIPRRVGYPLIVKPNRQGSTVGLSLVHT 187

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
              +   +  +  +    Q+++EQY+ G ELT GV+G  +L V EI +     + Y  KY
Sbjct: 188 PDELESAVRLARRF--DTQVMVEQYIAGRELTVGVLGAQALSVGEIVIEPGTIFDYRSKY 245

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
            + +     PA +P    +  QR+A  AH  +   G SR+D   D     ++ LE+N  P
Sbjct: 246 QAGHVLEQFPATLPAATLEAAQRIALRAHALLELDGYSRTDLRLDAQ-GILWCLEVNTLP 304

Query: 267 GMTPVSIFPEMAAYAGYSFRELLLWM 292
           GMT  S+ P+ AA +G +F +L   +
Sbjct: 305 GMTATSLLPQSAAASGIAFPQLCEQI 330


>gi|49484308|ref|YP_041532.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|282904750|ref|ZP_06312624.1| D-alanine--D-alanine ligase [Staphylococcus aureus subsp. aureus
           C160]
 gi|282906428|ref|ZP_06314279.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|295428670|ref|ZP_06821296.1| D-alanine-D-alanine ligase [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|56748623|sp|Q6GEZ1|DDL_STAAR RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|49242437|emb|CAG41151.1| D-alanine--D-alanine ligase [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|282330378|gb|EFB59896.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282594783|gb|EFB99760.1| D-alanine--D-alanine ligase [Staphylococcus aureus subsp. aureus
           C160]
 gi|295127340|gb|EFG56980.1| D-alanine-D-alanine ligase [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|315193242|gb|EFU23640.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus
           CGS00]
          Length = 356

 Score =  315 bits (807), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 85/339 (25%), Positives = 151/339 (44%), Gaps = 46/339 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           + ++ GG S+E EVS+ + +   +A++   + V  I +         +            
Sbjct: 6   ICIVFGGKSAEHEVSILTAQNVLNAIDKDKYHVDIIYITNDGDWRKQNNITTEIKSTDEL 65

Query: 49  --------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
                                  D  F +LHG  GEDG +Q + E+L++PY  +G+L++A
Sbjct: 66  HLENGEALEISQLLKESSSGQPYDAVFPLLHGPNGEDGTIQGLFEVLDVPYVGNGVLSAA 125

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSL 139
            SMDK+  KQ+    G+P  P I   R   +             ++ P  +KP   GSS+
Sbjct: 126 SSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYEHNILKLVNDKLNYPVFVKPANLGSSI 185

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKS 197
           GI     +  +   + ++  ++   +L+IEQ V+  E+   V+G+   + T     V   
Sbjct: 186 GISKCSNEVELKEGIKEAFQFDR--KLVIEQGVNAREIEVAVLGNDYPEATWPGEVVKDV 243

Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
            FY Y+ KY        +PA +  D+   ++ +A  A +A  C G+ R+DF       ++
Sbjct: 244 AFYDYKSKYKDGKVQLQIPADLDEDVQLTLRNMALEAFKATDCSGLVRADFFVTE-DNQI 302

Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +  E N  PG T  S++P++    G S+ EL+  ++E A
Sbjct: 303 YINETNAMPGFTAFSMYPKLWENMGLSYPELITKLIELA 341


>gi|226312432|ref|YP_002772326.1| D-alanine--D-alanine ligase [Brevibacillus brevis NBRC 100599]
 gi|226095380|dbj|BAH43822.1| D-alanine--D-alanine ligase [Brevibacillus brevis NBRC 100599]
          Length = 316

 Score =  315 bits (807), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 96/307 (31%), Positives = 165/307 (53%), Gaps = 10/307 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR--SVGLVLAHLKPDLAFNVL 58
           + V+MGGISSEREVSL +G+   + L+ + ++   I + +   +   +     D A   L
Sbjct: 3   IGVIMGGISSEREVSLKTGQEMINHLDRSRYEAVPIVITQRADLITQVQQAGIDFALLAL 62

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL-VNRFT 117
           HG +GEDG VQ  LE L IPYT SG+LAS+L M+K  SK ++ + G+     +   + + 
Sbjct: 63  HGQYGEDGTVQGALETLGIPYTGSGVLASSLCMNKQLSKMLLKTAGIQTPAGLYWKDVYD 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
             +   +  P ++KP  GGSS+G+ +++ ++ +   + ++S  + G  +LIE Y+ G EL
Sbjct: 123 PQAVEQLGYPVIVKPNLGGSSIGVQLVQNEKELLSAVQEASYLDQG--ILIEPYLKGTEL 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC ++    L +  I    S+++ Y  KY    +      ++P DI + V+  A  ++Q 
Sbjct: 181 TCAILDGEVLPIIGIRSAHSEWFDYRAKYEDGGAEE-KVIELPPDIQQRVREAALASYQL 239

Query: 238 IGCRGISRSDFLFDPL----SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           + C+  +R D +            + LE+N  PGMT  S+FP+ AA AG +F ++L  ++
Sbjct: 240 LQCKVYARVDMILCQDMPLCQDMPYVLEVNTLPGMTANSLFPKSAAAAGMTFTQVLDRII 299

Query: 294 EDASCLR 300
             +   R
Sbjct: 300 ASSLHER 306


>gi|324324244|gb|ADY19504.1| D-alanyl-alanine synthetase A [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 361

 Score =  315 bits (807), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 91/345 (26%), Positives = 156/345 (45%), Gaps = 52/345 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           + +L GG S+E +VSL +  A   AL    F++  I +      V               
Sbjct: 6   LGLLYGGKSAEHQVSLQTALAAIKALNQDKFEIHPIYITEQGQWVRGERIEGEVTDVEVL 65

Query: 46  -----------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
                                        D+ F +LHG  GEDG VQ +LEL+ IPY  +
Sbjct: 66  KMSGAENAISPLSLSTEIIPSANAEENAIDVIFPLLHGPNGEDGTVQGLLELMNIPYVGN 125

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPL 133
           G+LASA  MDK+  K + +  G+         R   +          + ++  P  +KP 
Sbjct: 126 GVLASAAGMDKVVMKNIFAEAGLKQAKYASFIRSAWEKDRETAYEKVEEVLGYPCFVKPA 185

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--DVTE 191
             GSS+GI   K  + +     ++  ++   ++++E+ + G E+  GV+G+      V  
Sbjct: 186 NLGSSVGINKCKNREELENAFEEAFQFDR--KIIVEENIVGREVEVGVLGNDEPKCSVVG 243

Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
             VPK DFY Y+ KY   ++  ++PA++  +    ++R A +A Q++   G++R+DF   
Sbjct: 244 EIVPKKDFYDYKSKYIDGDTALIIPAEMTEEESNVIKRDAIVAFQSLDGAGLTRADFFLT 303

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
               +V+  E+N  PG TP S+FP +  + G  + EL+  ++  A
Sbjct: 304 K-DGEVYINEVNTMPGFTPFSMFPLLWQHTGLPYPELIEELIRLA 347


>gi|226953385|ref|ZP_03823849.1| D-alanine-D-alanine ligase [Acinetobacter sp. ATCC 27244]
 gi|294651908|ref|ZP_06729198.1| D-alanine-D-alanine ligase [Acinetobacter haemolyticus ATCC 19194]
 gi|226835862|gb|EEH68245.1| D-alanine-D-alanine ligase [Acinetobacter sp. ATCC 27244]
 gi|292822231|gb|EFF81144.1| D-alanine-D-alanine ligase [Acinetobacter haemolyticus ATCC 19194]
          Length = 308

 Score =  315 bits (807), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 100/298 (33%), Positives = 153/298 (51%), Gaps = 8/298 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+ER VSL SG+A   AL  +G +    D        L     D AF VLHG
Sbjct: 10  VAVLLGGKSAERAVSLDSGQAVLEALLRSGVQAEAFDPQERSVTELVA--YDRAFIVLHG 67

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LE L IPYT +G+  SA+ MDK+++KQ+     +P  P  ++ + T   
Sbjct: 68  RGGEDGQIQGVLEWLNIPYTGTGVQGSAIGMDKVKTKQIWQGSDLPTAPYRIITKDTDLD 127

Query: 121 Q--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                +  P +IKP+  GSS+G+  ++K +     + ++++  H   ++ E+++ G E T
Sbjct: 128 AVIADLGLPVIIKPVHEGSSVGMSKVEKTEDFAAAIAKATA--HDAVVMAEKWITGREFT 185

Query: 179 CGVMGDASLDVTEIAVP-KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
              +    L V  +  P    FY YE KY   +  + +P  +     K +Q L   A QA
Sbjct: 186 ISFLNGQPLPVIRLQPPADVAFYDYEAKYQRNDVEYGIPCGLSEAEEKTLQALCLRAFQA 245

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           +G  G  R D + D      + LE+N  PGMT  S+ P+ A   GYSF  L + ++E 
Sbjct: 246 VGAEGWGRIDAMQDEQGN-FWLLEVNTVPGMTSHSLVPKAAQAVGYSFDALCVAILEQ 302


>gi|257486598|ref|ZP_05640639.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. tabaci ATCC
           11528]
 gi|331010080|gb|EGH90136.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. tabaci ATCC
           11528]
          Length = 363

 Score =  315 bits (807), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 98/354 (27%), Positives = 173/354 (48%), Gaps = 57/354 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR--------SVGLVLAHLKP- 51
           +A++ GG SSE EVSL S +   +A++   + ++ I VD+            +L    P 
Sbjct: 5   VAIVFGGQSSEHEVSLQSARNVINAIDRERYTLTLIGVDKLGRWLRFDEADYLLNANDPA 64

Query: 52  ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
                                             D+ F ++HG FGEDG +Q +L +L +
Sbjct: 65  RIKLSASGKQLSLLPGSTGGQFVEVETGKPLAAIDVVFPLIHGAFGEDGALQGVLRMLAV 124

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT----MDSQHLISPPYVIKPL 133
           P+  + +LASA  MDK  +K+++   G+ V P + ++R       D+   +  P  +KP 
Sbjct: 125 PFVGADVLASAACMDKDVTKRLLRDAGIAVAPFMGLSRGETLSFADAATQLGLPMFVKPA 184

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG--DASLDVTE 191
             GSS+G+  +  +      L     ++H  +LLIEQ + G E+ C V+G  DA + V  
Sbjct: 185 NQGSSVGVSKVSDEAGFVAALALGFEFDH--KLLIEQGIVGREVECAVLGNFDAQVSVCG 242

Query: 192 IAVPKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
             +   +FY+Y+ KY + +   + +PA+ P D+  +V+ +A  A++ +GC G+SR DF  
Sbjct: 243 EVIANDEFYAYDTKYLNGDQARIAIPAEFPADLSDQVREVALQAYKVLGCAGLSRVDFFV 302

Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV----EDASCLR 300
              +R +   E+N  PG T +S++P++   +G ++ EL+  ++    E A   R
Sbjct: 303 T-DTRDIIINEVNTLPGFTSISMYPKLWQASGLTYAELIHRLIVLALERADQAR 355


>gi|309379070|emb|CBX22372.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 304

 Score =  315 bits (807), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 107/299 (35%), Positives = 159/299 (53%), Gaps = 7/299 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSERE+SL SG A  +AL+  G      D   +    L       AFN LHG
Sbjct: 7   VAVLMGGFSSEREISLDSGTAILNALKSKGIDAHAFDPKETPLSELKERGFQTAFNTLHG 66

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-ILVNRFTMD 119
            +GEDG VQ  LELL IPYT SG+ ASA+ MDK R K +  + G+PV    +L +    D
Sbjct: 67  VYGEDGAVQGALELLGIPYTGSGVAASAIGMDKYRCKLIWQALGLPVPEFAVLHDDSDFD 126

Query: 120 S-QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           + +  +  P  +KP   GSS+G++ +K+   +    +     +   +++ E+++ G E +
Sbjct: 127 AVEEKLGLPMFVKPAAEGSSVGVVKVKEKGRLKS--VYEELKHLQGEIIAERFIGGGEYS 184

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQA 237
           C V+    L    I +P ++FY YE KY+  ++ +  PA  +       ++ LA    QA
Sbjct: 185 CPVLNGKGLPSIHI-IPATEFYDYEAKYNRDDTVYQCPAEDLGEAEETMMRSLAVRGAQA 243

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           IG  G  R DF       K++ LEIN  PGMT  S+ P+ AA  G  F +L + +++ A
Sbjct: 244 IGAAGCVRVDF-LKDTDGKLYLLEINTLPGMTSHSLVPKSAARTGVGFADLCIEILKTA 301


>gi|284052191|ref|ZP_06382401.1| D-alanyl-alanine synthetase A [Arthrospira platensis str. Paraca]
 gi|291566125|dbj|BAI88397.1| D-alanine--D-alanine ligase [Arthrospira platensis NIES-39]
          Length = 358

 Score =  315 bits (807), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 103/344 (29%), Positives = 166/344 (48%), Gaps = 50/344 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASAL----EDAGFKVSQIDVDRSVGL--------VLAH 48
           + +L GG S E EVS++S KA A+AL      + ++V  I ++++           VL  
Sbjct: 6   VGLLFGGCSGEHEVSITSAKAIANALSIDPNPSKYEVVPIYIEKNGVWHRGTEAEAVLES 65

Query: 49  LKP----------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
            +P                      DL F +LHG  GEDG VQ +L L+++PY  SG+L 
Sbjct: 66  GQPLTVTGEVIPSDRIPNPATVKDIDLWFPILHGPNGEDGTVQGMLTLMQVPYVGSGVLG 125

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTM------------DSQHLISPPYVIKPLK 134
           SA+ MDK+  K   S  G+P      V R  +            D    +  P  +KP  
Sbjct: 126 SAVGMDKIAMKMAFSQAGIPQVRYQAVRRSQVWSNPCIFPKLCDDLDAALGYPCFVKPAN 185

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194
            GSS+GI  ++  Q +   L  ++   +  ++++E  V+  EL C V+G+     + +  
Sbjct: 186 LGSSVGISKVRSRQELETALDAAA--TYDRRIIVEAGVEARELECAVLGNDYPKASVVGE 243

Query: 195 P--KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
               SDFY YE KY+   +  ++PA I   I  +V+ +A  A  A+   G++R DF +  
Sbjct: 244 ISYNSDFYDYETKYTDGKANLMIPAPIDTAIASKVRDMAIEAFLAVDAAGLARVDFFYIE 303

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            + +V   EIN  PG T +S++P++ +  G SF EL+  ++E A
Sbjct: 304 KTGEVLLNEINTLPGFTALSMYPQLWSATGVSFPELVNQLIELA 347


>gi|228989412|ref|ZP_04149401.1| D-alanine--D-alanine ligase [Bacillus pseudomycoides DSM 12442]
 gi|228995607|ref|ZP_04155273.1| D-alanine--D-alanine ligase [Bacillus mycoides Rock3-17]
 gi|229003234|ref|ZP_04161072.1| D-alanine--D-alanine ligase [Bacillus mycoides Rock1-4]
 gi|228758017|gb|EEM07224.1| D-alanine--D-alanine ligase [Bacillus mycoides Rock1-4]
 gi|228764179|gb|EEM13060.1| D-alanine--D-alanine ligase [Bacillus mycoides Rock3-17]
 gi|228770359|gb|EEM18934.1| D-alanine--D-alanine ligase [Bacillus pseudomycoides DSM 12442]
          Length = 364

 Score =  315 bits (807), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 89/345 (25%), Positives = 156/345 (45%), Gaps = 52/345 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           + +L GG S+E +VSL +  A   AL    F++  I +      +               
Sbjct: 9   LGLLYGGKSAEHQVSLQTALAAIKALNQEKFEIHPIYITEQGQWMRGERIEGEVTSVQAL 68

Query: 47  ------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
                                        D+ F +LHG  GEDG VQ +LEL+ IPY  +
Sbjct: 69  QMNGEENAISPVSLSTEIIPSSSKQEEAIDVIFPLLHGPNGEDGTVQGLLELMNIPYVGN 128

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPL 133
           G+LASA  MDK+  K + +  G+         R   +          + ++  P  +KP 
Sbjct: 129 GVLASAAGMDKVVMKNIFAEAGLKQAKYASFIRSVWEKNCQAAYEKVEEVLGYPCFVKPA 188

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
             GSS+GI   K  + +     ++  ++   ++++E+ + G E+  GV+G+     + I 
Sbjct: 189 NLGSSVGINKCKDREELEKAFEEAFQFDR--KIIVEENIVGREVEVGVLGNDEPKCSVIG 246

Query: 194 --VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
             VPK +FY Y+ KY   ++  ++PA++  +  K +QR A  A Q++   G++R+DF   
Sbjct: 247 EIVPKKEFYDYKSKYIDGDTALIIPAEVTEEESKAIQRDAIRAFQSLDGAGLTRADFFLT 306

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
               +V+  E+N  PG TP S+FP +  +    + +L+  ++  A
Sbjct: 307 K-DGEVYINEVNTMPGFTPFSMFPLLWQHTDLPYPKLIEELIRLA 350


>gi|223937418|ref|ZP_03629323.1| D-alanine/D-alanine ligase [bacterium Ellin514]
 gi|223893969|gb|EEF60425.1| D-alanine/D-alanine ligase [bacterium Ellin514]
          Length = 304

 Score =  315 bits (807), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 101/296 (34%), Positives = 156/296 (52%), Gaps = 6/296 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V++GG S+EREVSL +G A A AL   G +V ++D       + A  +  + F  LHG
Sbjct: 12  ITVMLGGPSAEREVSLRTGGAVAKALRSLGHRVDELDPKEKKWSLPAGTE--VVFLALHG 69

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG VQ  L+ L IPYT     AS L  DK+ +KQ     GVP    ++    +   
Sbjct: 70  TYGEDGTVQRELDKLGIPYTGCDAEASRLGFDKILTKQKCVEAGVPTARFMIFESRSAVW 129

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
                PP V+KP++ GSS+G+  + +       L ++    +  Q+L+E+ + G E T G
Sbjct: 130 PMGWQPPVVLKPVRQGSSVGLQFVDRVGDWSKKLAEAL--RYDTQVLMEERILGRETTVG 187

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           ++G+  L + E+  PK+  Y Y+ KY++  + ++ PA     +   +Q  A  A +AIG 
Sbjct: 188 ILGNRPLPIVEVR-PKAGNYDYQNKYTAGATEYLCPAPFDEAVTARIQEAALGAFKAIGG 246

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           R  SR D +  P + +   LE+N  PGMT  S+ P+ A  AG  + EL   MV+ A
Sbjct: 247 RDYSRVDVMVRP-NGEPVVLEVNTLPGMTETSLLPKAAMAAGIGYAELCQQMVDLA 301


>gi|261401752|ref|ZP_05987877.1| D-alanine--D-alanine ligase B [Neisseria lactamica ATCC 23970]
 gi|313667819|ref|YP_004048103.1| D-alanine--D-alanine ligase B [Neisseria lactamica ST-640]
 gi|269208126|gb|EEZ74581.1| D-alanine--D-alanine ligase B [Neisseria lactamica ATCC 23970]
 gi|313005281|emb|CBN86714.1| D-alanine--D-alanine ligase B [Neisseria lactamica 020-06]
          Length = 304

 Score =  315 bits (807), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 107/299 (35%), Positives = 159/299 (53%), Gaps = 7/299 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSERE+SL SG A  +AL+  G      D   +    L       AFN LHG
Sbjct: 7   VAVLMGGFSSEREISLDSGTAILNALKSKGIDAHAFDPKETPLSELKERGFQTAFNTLHG 66

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-ILVNRFTMD 119
            +GEDG VQ  LELL IPYT SG+ ASA+ MDK R K +  + G+PV    +L +    D
Sbjct: 67  VYGEDGAVQGALELLGIPYTGSGVAASAIGMDKYRCKLIWQALGLPVPEFAVLHDDSDFD 126

Query: 120 S-QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           + +  +  P  +KP   GSS+G++ +K+   +    +     +   +++ E+++ G E +
Sbjct: 127 AVEEKLGLPMFVKPAAEGSSVGVVKVKEKGRLKS--VYEELKHLQGEIIAERFIGGGEYS 184

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQA 237
           C V+    L    I +P ++FY YE KY+  ++ +  PA  +       ++ LA    QA
Sbjct: 185 CPVLNGKGLPSIHI-IPATEFYDYEAKYNRDDTVYQCPAEDLGEAEETLMRSLAVRGAQA 243

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           IG  G  R DF       K++ LEIN  PGMT  S+ P+ AA  G  F +L + +++ A
Sbjct: 244 IGAAGCVRVDF-LKDTDGKLYLLEINTLPGMTSHSLVPKSAARTGVGFADLCIEILKTA 301


>gi|228983491|ref|ZP_04143701.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228776235|gb|EEM24591.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 361

 Score =  314 bits (806), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 91/345 (26%), Positives = 156/345 (45%), Gaps = 52/345 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           + +L GG S+E +VSL +  A   AL    F++  I +      V               
Sbjct: 6   LGLLYGGKSAEHQVSLQTALAAIKALNQDKFEIHPIYITEQGQWVRGERIEGEVTDVEVL 65

Query: 46  -----------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
                                        D+ F +LHG  GEDG VQ +LEL+ IPY  +
Sbjct: 66  KMSGAENAISPLSLSTEIIPSANAEENAIDVIFPLLHGPNGEDGTVQGLLELMNIPYVGN 125

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPL 133
           G+LASA  MDK+  K + +  G+         R   +          + ++  P  +KP 
Sbjct: 126 GVLASAAGMDKVVMKNIFAEAGLKQAKYASFIRSAWEKDRETAYEKVEEVLGYPCFVKPA 185

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--DVTE 191
             GSS+GI   K  + +     ++  ++   ++++E+ + G E+  GV+G+      V  
Sbjct: 186 NLGSSVGINKCKNREELENAFEEAFQFDR--KIIVEENIVGREVEVGVLGNDEPKCSVVG 243

Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
             VPK DFY Y+ KY   ++  ++PA++  +    ++R A +A Q++   G++R+DF   
Sbjct: 244 EIVPKKDFYDYKSKYIDGDTALIIPAEMTEEESNVIKRDAIVAFQSLDGAGLTRADFFLT 303

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
               +V+  E+N  PG TP S+FP +  + G  + EL+  ++  A
Sbjct: 304 K-DGEVYINEVNTMPGFTPFSMFPLLWQHTGLPYPELIEELIRLA 347


>gi|47567482|ref|ZP_00238194.1| D-alanine--D-alanine ligase [Bacillus cereus G9241]
 gi|47555884|gb|EAL14223.1| D-alanine--D-alanine ligase [Bacillus cereus G9241]
          Length = 361

 Score =  314 bits (806), Expect = 8e-84,   Method: Composition-based stats.
 Identities = 91/345 (26%), Positives = 156/345 (45%), Gaps = 52/345 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           + +L GG S+E +VSL +  A   AL    F++  I +      V               
Sbjct: 6   LGLLYGGKSAEHQVSLQTALAAIKALNQDKFEIHPIYITEQGQWVRGERIEGEVTDVEVL 65

Query: 46  -----------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
                                        D+ F +LHG  GEDG VQ +LEL+ IPY  +
Sbjct: 66  KMSGAENAISPLSLSTEIIPSANAEENAIDVIFPLLHGPNGEDGTVQGLLELMNIPYVGN 125

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPL 133
           G+LASA  MDK+  K + +  G+         R   +          + ++  P  +KP 
Sbjct: 126 GVLASAAGMDKVVMKNIFAEAGLKQAKYASFIRSAWEKDHETAYEKVEEVLGYPCFVKPA 185

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--DVTE 191
             GSS+GI   K  + +     ++  ++   ++++E+ + G E+  GV+G+      V  
Sbjct: 186 NLGSSVGINKCKNREELENAFEEAFQFDR--KIIVEENIVGREVEVGVLGNDEPKCSVVG 243

Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
             VPK DFY Y+ KY   ++  ++PA++  +    ++R A +A Q++   G++R+DF   
Sbjct: 244 EIVPKKDFYDYKSKYIDGDTALIIPAEMTEEESNVIKRDAIVAFQSLDGAGLTRADFFLT 303

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
               +V+  E+N  PG TP S+FP +  + G  + EL+  ++  A
Sbjct: 304 K-DGEVYINEVNTMPGFTPFSMFPLLWQHTGLPYPELIEELIRLA 347


>gi|114766763|ref|ZP_01445700.1| D-alanine--D-alanine ligase [Pelagibaca bermudensis HTCC2601]
 gi|114541020|gb|EAU44077.1| D-alanine--D-alanine ligase [Roseovarius sp. HTCC2601]
          Length = 271

 Score =  314 bits (806), Expect = 8e-84,   Method: Composition-based stats.
 Identities = 121/276 (43%), Positives = 176/276 (63%), Gaps = 8/276 (2%)

Query: 27  EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
              G++V+++D  R +   L  L PD+ FN LHG +GEDG VQ +LE + +PYTHSG+LA
Sbjct: 2   RAEGYQVTEVDAGRDLAQRLEALAPDVVFNALHGRWGEDGCVQGLLEWMGLPYTHSGVLA 61

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           SA++MDK RSK+V  + G+PV  S+L ++  + ++H+++PPYV+KP   GSS+G+ ++++
Sbjct: 62  SAVAMDKERSKEVYRAAGLPVVESVLASKAEISARHMMAPPYVVKPYNEGSSVGVYLVQE 121

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
             + P  + +    +  D L++E Y  G ELT  VMGD +L VT+I      +Y Y+ KY
Sbjct: 122 GANTPPRIAE----DMPDTLMVETYAPGRELTTTVMGDRALTVTDIIT--EGWYDYDAKY 175

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR--KVFWLEINV 264
               S H LPA +P +I+      A  AH+A+GCRG+SR+DF +D       +  LE N 
Sbjct: 176 KEGGSRHELPADVPAEIFDACLAYALRAHEALGCRGVSRTDFRWDESRGLDGLILLETNT 235

Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           QPGMTP S+ PE A + G SF  L+ WMVEDASC R
Sbjct: 236 QPGMTPTSLVPEQAQHCGMSFGALMRWMVEDASCNR 271


>gi|99035926|ref|ZP_01314973.1| hypothetical protein Wendoof_01000181 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 317

 Score =  314 bits (806), Expect = 8e-84,   Method: Composition-based stats.
 Identities = 120/298 (40%), Positives = 186/298 (62%), Gaps = 5/298 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +A+L GG S ERE+SL SGKA   AL+   +   +IDVD ++   L  + P LAF  LHG
Sbjct: 7   IAILSGGFSCEREISLMSGKAVKKALDSLSYNAIEIDVDSNIAEKLKKINPGLAFIALHG 66

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG +Q +LE+L I YTHSG++ASA++++K+ SK +  S  +      +++R  +  
Sbjct: 67  PYGEDGCIQGLLEILGIKYTHSGVMASAVAINKVMSKHIFRSLNIDTPKGYVISREDVLK 126

Query: 121 QHL-ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
            ++ I  PYV+KP+  GSS+G+ +I   +   L+L  +SS    +++++E+Y+ GIEL  
Sbjct: 127 NNIKIDYPYVLKPINEGSSIGVYIIFSHEDY-LELKNNSS-TIMEKMIVEEYIPGIELHT 184

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
            V+ D ++   E+  PK+ FY YE KY+   + H+ PAKIP +IYK     A   HQ +G
Sbjct: 185 AVLLDEAIGTIEVR-PKNKFYDYEAKYTDGFAEHIFPAKIPDNIYKMTLEHALKIHQFLG 243

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA-YAGYSFRELLLWMVEDA 296
           C+ ISRSDF ++P +  +  LEIN  PG T +S+ PE+A    G +F EL+  ++ED+
Sbjct: 244 CKTISRSDFRYNPKNNTLKMLEINTHPGFTELSLVPEIAKLAKGINFNELVKIIIEDS 301


>gi|42520004|ref|NP_965919.1| D-alanine--D-alanine ligase [Wolbachia endosymbiont of Drosophila
           melanogaster]
 gi|81831298|sp|Q73IQ8|DDL_WOLPM RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|42409741|gb|AAS13853.1| D-alanine--D-alanine ligase [Wolbachia endosymbiont of Drosophila
           melanogaster]
          Length = 315

 Score =  314 bits (806), Expect = 8e-84,   Method: Composition-based stats.
 Identities = 120/298 (40%), Positives = 186/298 (62%), Gaps = 5/298 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +A+L GG S ERE+SL SGKA   AL+   +   +IDVD ++   L  + P LAF  LHG
Sbjct: 5   IAILSGGFSCEREISLMSGKAVKKALDSLSYNAIEIDVDSNIAEKLKKINPGLAFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG +Q +LE+L I YTHSG++ASA++++K+ SK +  S  +      +++R  +  
Sbjct: 65  PYGEDGCIQGLLEILGIKYTHSGVMASAVAINKVMSKHIFRSLNIDTPKGYVISREDVLK 124

Query: 121 QHL-ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
            ++ I  PYV+KP+  GSS+G+ +I   +   L+L  +SS    +++++E+Y+ GIEL  
Sbjct: 125 NNIKIDYPYVLKPINEGSSIGVYIIFSHEDY-LELKNNSS-TIMEKMIVEEYIPGIELHT 182

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
            V+ D ++   E+  PK+ FY YE KY+   + H+ PAKIP +IYK     A   HQ +G
Sbjct: 183 AVLLDEAIGTIEVR-PKNKFYDYEAKYTDGFAEHIFPAKIPDNIYKMTLEHALKIHQFLG 241

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA-YAGYSFRELLLWMVEDA 296
           C+ ISRSDF ++P +  +  LEIN  PG T +S+ PE+A    G +F EL+  ++ED+
Sbjct: 242 CKTISRSDFRYNPKNNTLKMLEINTHPGFTELSLVPEIAKLAKGINFNELVKIIIEDS 299


>gi|228937527|ref|ZP_04100169.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228970414|ref|ZP_04131069.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228976984|ref|ZP_04137392.1| D-alanine--D-alanine ligase [Bacillus thuringiensis Bt407]
 gi|228782731|gb|EEM30901.1| D-alanine--D-alanine ligase [Bacillus thuringiensis Bt407]
 gi|228789300|gb|EEM37224.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228822138|gb|EEM68124.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|326938016|gb|AEA13912.1| D-alanyl-alanine synthetase A [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 361

 Score =  314 bits (806), Expect = 8e-84,   Method: Composition-based stats.
 Identities = 90/345 (26%), Positives = 156/345 (45%), Gaps = 52/345 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           + +L GG S+E +VSL +  A   AL    F++  I +      V               
Sbjct: 6   LGLLYGGKSAEHQVSLQTALAAIKALNQDKFEIHPIYITEQGQWVRGERIEGEVTDVEAL 65

Query: 47  ------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
                                        D+ F +LHG  GEDG VQ +LEL+ IPY  +
Sbjct: 66  KMSSAENAISPLSLSTEIIPSAASEENAIDVIFPLLHGPNGEDGTVQGLLELMNIPYVGN 125

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPL 133
           G+LAS+  MDK+  K + +  G+         R   +          +  +  P  +KP 
Sbjct: 126 GVLASSAGMDKVVMKNIFAEAGLKQAKYASFIRSAWEKDRQEAYSKVEDKLGYPCFVKPA 185

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--DVTE 191
             GSS+GI   K  + +    +++  ++   ++++E+ + G E+  GV+G+      V  
Sbjct: 186 NLGSSVGINKCKNREELENAFVEAFQFDR--KIIVEENIVGREVEVGVLGNDEPKCSVVG 243

Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
             VPK DFY Y+ KY   ++  ++PA++  +    ++R A +A Q++   G++R+DF   
Sbjct: 244 EIVPKKDFYDYKSKYIDGDTALIIPAEMTEEESDVIKRDAIIAFQSLDGAGLTRADFFLT 303

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
               +V+  E+N  PG TP S+FP +  + G  + EL+  ++  A
Sbjct: 304 K-DGEVYINEVNTMPGFTPFSMFPLLWQHTGLPYPELIEELIRLA 347


>gi|262197342|ref|YP_003268551.1| D-alanine/D-alanine ligase [Haliangium ochraceum DSM 14365]
 gi|262080689|gb|ACY16658.1| D-alanine/D-alanine ligase [Haliangium ochraceum DSM 14365]
          Length = 333

 Score =  314 bits (806), Expect = 8e-84,   Method: Composition-based stats.
 Identities = 103/300 (34%), Positives = 174/300 (58%), Gaps = 8/300 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VLMGG+SSE+ +SL++G A  ++LED G+ V +I VDR V + L     D+AF  LHG
Sbjct: 6   IGVLMGGLSSEKAISLATGDAVMASLEDRGYDVQKIFVDRDVDMALRQANIDVAFIALHG 65

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG +Q +LE + IPYT SG++ASAL+M+K +SK++     +P     ++NR     
Sbjct: 66  RFGEDGCIQGLLETMGIPYTGSGVMASALAMNKAKSKEMFRLHNLPTPSYYVLNRVDEHD 125

Query: 121 ----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
                     P V+KPL  GSS+G+ +    + +     ++  ++H   +++E++V+G+E
Sbjct: 126 VLGCHGDFGYPVVVKPLTEGSSVGVSLASTPEELLAACERAFVFDHS--VVVERFVEGME 183

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           ++  V+ D +L   E+A  +   + Y  KY+S  + +++P ++  + Y+ V   A  AH 
Sbjct: 184 VSVAVLEDRALGAVEVA-SEGPLFDYGAKYTSGATEYIIPPRLSPERYRGVLTQAVRAHL 242

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           A+ C G SR D +  P   + + LE+N  P + P S+ P++A  AG  F +L+  ++  A
Sbjct: 243 ALDCSGASRVDMIVSPTGNE-YILEVNTLPALAPRSLLPKIAVAAGMDFDDLVEAILLGA 301


>gi|225630001|ref|YP_002726792.1| D-alanine--D-alanine ligase [Wolbachia sp. wRi]
 gi|259645176|sp|C0R5F9|DDL_WOLWR RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|225591982|gb|ACN95001.1| D-alanine--D-alanine ligase [Wolbachia sp. wRi]
          Length = 317

 Score =  314 bits (806), Expect = 9e-84,   Method: Composition-based stats.
 Identities = 120/298 (40%), Positives = 186/298 (62%), Gaps = 5/298 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +A+L GG S ERE+SL SGKA   AL+   +   +IDVD ++   L  + P LAF  LHG
Sbjct: 7   IAILSGGFSCEREISLMSGKAVKKALDSLSYNAIEIDVDSNIAEKLKKINPGLAFIALHG 66

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG +Q +LE+L I YTHSG++ASA++++K+ SK +  S  +      +++R  +  
Sbjct: 67  PYGEDGCIQGLLEILGIKYTHSGVMASAVAINKVMSKHIFRSLNIDTPKGYVISREDVLK 126

Query: 121 QHL-ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
            ++ I  PYV+KP+  GSS+G+ +I   +   L+L  +SS    +++++E+Y+ GIEL  
Sbjct: 127 NNIKIDYPYVLKPINEGSSIGVYIIFSHEDY-LELKDNSS-TIMEKMIVEEYIPGIELHT 184

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
            V+ D ++   E+  PK+ FY YE KY+   + H+ PAKIP +IYK     A   HQ +G
Sbjct: 185 AVLLDEAIGTIEVR-PKNKFYDYEAKYTDGFAEHIFPAKIPDNIYKMTLEHALKIHQFLG 243

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA-YAGYSFRELLLWMVEDA 296
           C+ ISRSDF ++P +  +  LEIN  PG T +S+ PE+A    G +F EL+  ++ED+
Sbjct: 244 CKTISRSDFRYNPKNNTLKMLEINTHPGFTELSLVPEIAKLAKGINFNELVKIIIEDS 301


>gi|148244843|ref|YP_001219537.1| D-alanine-D-alanine ligase B [Candidatus Vesicomyosocius okutanii
           HA]
 gi|190359219|sp|A5CW55|DDL_VESOH RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|146326670|dbj|BAF61813.1| D-alanine-D-alanine ligase B [Candidatus Vesicomyosocius okutanii
           HA]
          Length = 293

 Score =  314 bits (806), Expect = 9e-84,   Method: Composition-based stats.
 Identities = 101/295 (34%), Positives = 146/295 (49%), Gaps = 4/295 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +A+LMGG S+ER +SL SG+A    L +        D            + D  F +LHG
Sbjct: 2   IAILMGGNSAERAISLKSGEAIYQTLNNQNIDCFTFDWYGDNLSEFWQQEFDQVFIILHG 61

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q  LE   I YT S   AS  SMDK R+K +     + + PSI+ N     +
Sbjct: 62  RGGEDGYIQKQLENRGICYTGSDSNASHNSMDKARTKIIWEQHSLTLAPSIIANIDQPIN 121

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
                 P+ +KP   GSS+GI  +  D  + L+     +W +    LIEQ++ G E T  
Sbjct: 122 PINFPLPWAVKPTLEGSSIGISKV--DNQMQLNDALMLAWQYAPYALIEQWIKGDEYTVA 179

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           ++GD +L V  I     +FY YE KY S  + ++ P  + L   K +Q +A  A  AI  
Sbjct: 180 ILGDKALPVVRIIT-DQNFYDYESKYHSNKTQYLCPCNLSLTQEKALQAIALKAFFAINA 238

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           +G  R DF+ +    K + LEIN  PGMT  S+ P  A   G SF +L+  ++ +
Sbjct: 239 KGWGRVDFIINQH-NKPYLLEINTVPGMTSHSLVPMAAKAIGISFNKLVTSIINE 292


>gi|228963329|ref|ZP_04124494.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar sotto
           str. T04001]
 gi|228796357|gb|EEM43800.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar sotto
           str. T04001]
          Length = 361

 Score =  314 bits (806), Expect = 9e-84,   Method: Composition-based stats.
 Identities = 90/345 (26%), Positives = 156/345 (45%), Gaps = 52/345 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           + +L GG S+E +VSL +  A   AL    F++  I +      V               
Sbjct: 6   LGLLYGGKSAEHQVSLQTALAAIKALNQDKFEIHPIYITEQGQWVRGERIEGEVTDVEAL 65

Query: 47  ------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
                                        D+ F +LHG  GEDG VQ +LEL+ IPY  +
Sbjct: 66  KMSSAENAISPLSLSTEIIPSAASEENTIDVIFPLLHGPNGEDGTVQGLLELMNIPYVGN 125

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPL 133
           G+LAS+  MDK+  K + +  G+         R   +          +  +  P  +KP 
Sbjct: 126 GVLASSAGMDKVVMKNIFAEAGLKQAKYASFIRSAWEKDREEAYSKVEDKLGYPCFVKPA 185

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--DVTE 191
             GSS+GI   K  + +    +++  ++   ++++E+ + G E+  GV+G+      V  
Sbjct: 186 NLGSSVGINKCKNREELENAFVEAFQFDR--KIIVEENIVGREVEVGVLGNDEPKCSVVG 243

Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
             VPK DFY Y+ KY   ++  ++PA++  +    ++R A +A Q++   G++R+DF   
Sbjct: 244 EIVPKKDFYDYKSKYIDGDTALIIPAEMTEEESDVIKRDAIIAFQSLDGAGLTRADFFLT 303

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
               +V+  E+N  PG TP S+FP +  + G  + EL+  ++  A
Sbjct: 304 K-DGEVYINEVNTMPGFTPFSMFPLLWQHTGLPYPELIEELIRLA 347


>gi|300856376|ref|YP_003781360.1| D-alanine-D-alanine ligase A [Clostridium ljungdahlii DSM 13528]
 gi|300436491|gb|ADK16258.1| D-alanine-D-alanine ligase A [Clostridium ljungdahlii DSM 13528]
          Length = 296

 Score =  314 bits (806), Expect = 9e-84,   Method: Composition-based stats.
 Identities = 97/297 (32%), Positives = 166/297 (55%), Gaps = 9/297 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGGISSEREVSL+SGK   + L+   ++V  I +D+   ++      D AF  LHG
Sbjct: 3   IGVIMGGISSEREVSLNSGKEIVNCLDKNKYEVVPIVIDKKRDVLEKVKDIDFAFIALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFT 117
            FGEDG +Q++LE ++IPY+  G L SA+ MDK  SK+V+ S  +     I V       
Sbjct: 63  KFGEDGTIQSVLETMDIPYSGCGPLTSAICMDKDMSKKVLKSADINTAKWICVKSIEEID 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            D    I  P V+KP  GGSS+   ++KK + I  ++  +   ++  +++IE+Y+ G E+
Sbjct: 123 YDKLDEIGYPVVVKPNCGGSSVATNIVKKKEDIENNVKLAL--DYDTEVVIEKYIQGDEI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC ++   +L V  I  P ++F+ Y  KY+   S  ++  ++   + ++V+++     + 
Sbjct: 181 TCCMLKGKTLPVIAIK-PNAEFFDYTAKYADGGSDEIV-VELEKSLQEKVEKICVQCWEV 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           + C+  +R D +    +   + LE+N  PG+T  S+FP+ A     SF +LL  +++
Sbjct: 239 LKCKSYARVDIIV--ENGIPYVLELNTLPGLTKNSLFPKSARGIDMSFTQLLDKVIQ 293


>gi|325203531|gb|ADY98984.1| D-alanine--D-alanine ligase B [Neisseria meningitidis M01-240355]
          Length = 304

 Score =  314 bits (806), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 104/299 (34%), Positives = 157/299 (52%), Gaps = 7/299 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSERE+SL SG A  +AL+  G      D   +    L       AFN+LHG
Sbjct: 7   VAVLMGGFSSEREISLDSGTAILNALKSKGIDAYAFDPKETPLSELKAQGFQTAFNILHG 66

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--M 118
            +GEDG VQ  LELL I YT SG+ ASA+ MDK R K +  + G+PV    +++  T   
Sbjct: 67  TYGEDGAVQGALELLGISYTGSGVAASAIGMDKYRCKLIWQALGLPVPEFAVLHDDTDFD 126

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
             +  +  P  +KP   GSS+G++ +K+   +    +     +   +++ E+++ G E +
Sbjct: 127 AVEEKLGLPMFVKPAAEGSSVGVVKVKEKGRLKS--VYEELKHLQGEIIAERFIGGGEYS 184

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQA 237
           C V+    L    I +P ++FY YE KY+  ++ +  P   +       ++ LA    QA
Sbjct: 185 CPVLNGKGLPGIHI-IPATEFYDYEAKYNRNDTIYQCPSEDLTEAEESLMRELAVRGAQA 243

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           IG  G  R DF       K++ LEIN  PGMT  S+ P+ AA  G  F +L + +++ A
Sbjct: 244 IGAEGCVRVDF-LKDTDGKLYLLEINTLPGMTSHSLVPKSAAVTGVGFADLCIEILKTA 301


>gi|182419791|ref|ZP_02951031.1| D-alanine--D-alanine ligase B [Clostridium butyricum 5521]
 gi|237666531|ref|ZP_04526516.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB)
           (D-Ala-D-Ala ligase B) [Clostridium butyricum E4 str.
           BoNT E BL5262]
 gi|182376339|gb|EDT73921.1| D-alanine--D-alanine ligase B [Clostridium butyricum 5521]
 gi|237657730|gb|EEP55285.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB)
           (D-Ala-D-Ala ligase B) [Clostridium butyricum E4 str.
           BoNT E BL5262]
          Length = 301

 Score =  314 bits (806), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 100/299 (33%), Positives = 170/299 (56%), Gaps = 8/299 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGGISSERE+SL+SGK+    +    ++V  I +D+   +V      D A   LHG
Sbjct: 3   IGVIMGGISSEREISLNSGKSIVENINKDKYEVEAIVIDKKEDIVTKVKGIDFALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFT 117
            FGEDG VQA+L+ L IPY+  G L+SA+ MDK  +K ++ +  +   P I +   ++  
Sbjct: 63  QFGEDGTVQAVLQTLGIPYSGCGPLSSAMCMDKDVTKSILQAAKIRTAPWINLSKNDKID 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            D+   +  P V+KP  GGSS+   ++K+++ I   + +   W    +++IE+++ G E+
Sbjct: 123 YDAIKKLGYPVVVKPTHGGSSVATFIVKEEKEIEECVKEGFKW--DSEVMIEKFIKGDEI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC V GD  L V  I  PK++F+ +  KY    +  V+  ++  ++++EV+++A   ++A
Sbjct: 181 TCPVYGDRMLPVIAIK-PKAEFFDFASKYQDGGAEEVV-VELDKNLHEEVEKMALATYKA 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           + C   SR D +        + LE+N  PGMT  S+ P+ AA     F +L+  ++ED+
Sbjct: 239 LKCEVYSRVDMIVTT-DGVPYILEVNTLPGMTKNSLIPKSAAAVNIDFAQLVDMIIEDS 296


>gi|300924095|ref|ZP_07140089.1| D-ala D-ala ligase [Escherichia coli MS 182-1]
 gi|301330768|ref|ZP_07223366.1| D-ala D-ala ligase [Escherichia coli MS 78-1]
 gi|300419691|gb|EFK03002.1| D-ala D-ala ligase [Escherichia coli MS 182-1]
 gi|300843281|gb|EFK71041.1| D-ala D-ala ligase [Escherichia coli MS 78-1]
          Length = 364

 Score =  314 bits (805), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 89/348 (25%), Positives = 166/348 (47%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           + ++ GG S+E EVSL S K    A++ + F V  + +D+     ++             
Sbjct: 6   VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPA 65

Query: 49  -------------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEI 77
                                          L  D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  HIALRPSATSLAQVPGKHEHQLIDAQNGQPLLTVDVIFAIVHGTLGEDGSLQGMLRVANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLISPPYVIK 131
           P+  S +LASA  MDK  +K+++   G+ + P I + R         + +  +  P  +K
Sbjct: 126 PFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  +  ++   + +  +  ++H  ++++EQ + G E+ C V+G+ +   + 
Sbjct: 186 PANQGSSVGVSKVTSEEQYAIAVDLAFEFDH--KVIVEQGIKGREIECAVLGNDNPQAST 243

Query: 192 IA--VPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               V  SDFY+Y+ KY     +  V+PA I  +I  +++ +A  A+Q +GC G++R D 
Sbjct: 244 CGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              P   +V   EIN  PG T +S++P++   +G  + +L+  ++E A
Sbjct: 304 FLTP-ENEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350


>gi|229074283|ref|ZP_04207327.1| D-alanine--D-alanine ligase [Bacillus cereus Rock4-18]
 gi|229094944|ref|ZP_04225947.1| D-alanine--D-alanine ligase [Bacillus cereus Rock3-29]
 gi|229113898|ref|ZP_04243331.1| D-alanine--D-alanine ligase [Bacillus cereus Rock1-3]
 gi|228669559|gb|EEL24968.1| D-alanine--D-alanine ligase [Bacillus cereus Rock1-3]
 gi|228688477|gb|EEL42352.1| D-alanine--D-alanine ligase [Bacillus cereus Rock3-29]
 gi|228708835|gb|EEL60964.1| D-alanine--D-alanine ligase [Bacillus cereus Rock4-18]
          Length = 361

 Score =  314 bits (805), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 90/345 (26%), Positives = 155/345 (44%), Gaps = 52/345 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           + +L GG S+E +VSL +  A   AL    F++  I +      V               
Sbjct: 6   LGLLYGGKSAEHQVSLQTALAAIKALNQDKFEIHPIYITEQGQWVRGERIEGEVTDVEAL 65

Query: 47  ------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
                                        D+ F +LHG  GEDG VQ +LEL+ IPY  +
Sbjct: 66  KMSGAENSISPLSLSTEIIPSATSEEDAIDVIFPLLHGPNGEDGTVQGLLELMNIPYVGN 125

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPL 133
           G+LAS+  MDK+  K + +  G+         R   +          +  +  P  +KP 
Sbjct: 126 GVLASSAGMDKVVMKNIFAEAGLKQAKYASFIRSAWEKNREEAYDKVEEKLGYPCFVKPA 185

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--DVTE 191
             GSS+GI   K  + +     ++  ++   ++++E+ + G E+  GV+G+      V  
Sbjct: 186 NLGSSVGINKCKNREELESAFEEAFQFDR--KIIVEENIVGREVEVGVLGNDEPKCSVVG 243

Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
             VPK DFY Y+ KY   ++  ++PA++  +    ++R A +A Q++   G++R+DF   
Sbjct: 244 EIVPKKDFYDYKSKYIDGDTALIIPAEMTEEESNVIKRDAIVAFQSLDGAGLTRADFFLT 303

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
               +V+  E+N  PG TP S+FP +  + G  + EL+  ++  A
Sbjct: 304 K-DGEVYINEVNTMPGFTPFSMFPLLWQHTGLPYPELIEELIRLA 347


>gi|134102567|ref|YP_001108228.1| D-alanyl-alanine synthetase A [Saccharopolyspora erythraea NRRL
           2338]
 gi|291007062|ref|ZP_06565035.1| D-alanyl-alanine synthetase A [Saccharopolyspora erythraea NRRL
           2338]
 gi|133915190|emb|CAM05303.1| D-alanylalanine synthetase [Saccharopolyspora erythraea NRRL 2338]
          Length = 362

 Score =  314 bits (805), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 96/353 (27%), Positives = 159/353 (45%), Gaps = 57/353 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +AV+ GG S+E  +S  S  +  + L+   F+V  + + +    VLA   P         
Sbjct: 8   VAVVFGGRSTEHGISCVSAGSVLAHLDRDRFEVVPVGITKEGAWVLAGDDPEALEIQDRR 67

Query: 52  -----------------------------------DLAFNVLHGNFGEDGLVQAILELLE 76
                                              D+ F VLHG FGEDG +Q +LE+  
Sbjct: 68  TPEITSGKAVALPGDPTRDLMYLEPGRGGEVLSSVDVVFPVLHGAFGEDGTIQGLLEMAG 127

Query: 77  IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF----TMDSQHLISPPYVIKP 132
           +PY   G+L+SA++MDK  +K+++++ G+ V    ++ R         +  +  P  +KP
Sbjct: 128 VPYAGPGVLSSAVAMDKEYTKKLLAAEGLAVGTYEVLRRDQSTLDQQQRERLGLPVFVKP 187

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG------DAS 186
            + GSSLGI  +     +  D   + +     +++IE  V G E+ CGV+       +AS
Sbjct: 188 ARAGSSLGITKVTDHADL--DDAIAEARRTDPKVIIESAVTGREVECGVLEFPDGRVEAS 245

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRS 246
           L         S +Y YE KY    +   +PAKI  D  + ++  A  A +A+ C+G++R 
Sbjct: 246 LPAELRVTGDSTWYDYESKYLDDVTEFDIPAKIGDDAIERMREAAVTAFRALECQGLARV 305

Query: 247 DFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
           DF       ++   E+N  PG T +S++P M A  G  +  LL  ++E A   
Sbjct: 306 DFFV-ADDGELIVNEVNTMPGFTAISLYPRMWAQTGVDYPTLLSTLIETAIAR 357


>gi|190572289|ref|YP_001970134.1| D-alanyl-alanine synthetase A [Stenotrophomonas maltophilia K279a]
 gi|190010211|emb|CAQ43819.1| putative D-alanine--D-alanine ligase A (D-alanylalanine synthetase
           A) (D-ala-D-ala ligase A) [Stenotrophomonas maltophilia
           K279a]
          Length = 404

 Score =  314 bits (805), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 84/348 (24%), Positives = 156/348 (44%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           + ++ GG SSE EVSL S K    AL+   F+   + +D+     L+             
Sbjct: 46  VGIIFGGKSSEHEVSLQSAKNILDALDRERFEPVLVGIDKQGQWHLSQPDTFLINADDPS 105

Query: 49  -------------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEI 77
                                           + D+   ++HG  GEDG +Q +L ++ +
Sbjct: 106 LIALHRSGQSLAVRPGAEQAQLQPSDAASALGQIDVVLPIVHGPLGEDGALQGLLRMINL 165

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVIK 131
           P+  S +L SA++MDK  +K+++   G+ V P + + R              +  P  +K
Sbjct: 166 PFVGSPVLGSAVAMDKDVTKRLLRDAGLQVAPWLCIRRHEAAEVDADAVIAQLGLPLFVK 225

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  +K        L  +  ++H  ++L+E  V G E+ C V+G+     + 
Sbjct: 226 PANQGSSVGVSKVKDAAGFAEALALALRYDH--KVLVESAVVGREIECAVLGNEHPQASV 283

Query: 192 I--AVPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               V   +FY+Y+ KY ++  +  V+PA I       ++++A  A+Q + C G++R D 
Sbjct: 284 CGEVVVHDEFYAYDTKYINANGADVVVPADIDAATQARIRQIARQAYQTLECAGMARVDV 343

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                  ++   E+N  PG T +S++P++   +G  +  L+  ++E A
Sbjct: 344 FLTA-DGEIVINEVNTLPGFTRISMYPKLWGASGVDYTTLITRLIELA 390


>gi|222094005|ref|YP_002528056.1| d-alanyl-alanine synthetase a [Bacillus cereus Q1]
 gi|221238054|gb|ACM10764.1| D-alanine--D-alanine ligase [Bacillus cereus Q1]
          Length = 361

 Score =  314 bits (805), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 91/345 (26%), Positives = 156/345 (45%), Gaps = 52/345 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           + +L GG S+E +VSL +  A   AL    F++  I +      V               
Sbjct: 6   LGLLYGGKSAEHQVSLQTALAAIKALNQDKFEIHPIYITEQGQWVRGERIEGEVTDVEIL 65

Query: 46  -----------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
                                        D+ F +LHG  GEDG VQ +LEL+ IPY  +
Sbjct: 66  KMSGAENAISPLSLSTEIIPSANAEENAIDVIFPLLHGPNGEDGTVQGLLELMNIPYVGN 125

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPL 133
           G+LASA  MDK+  K + +  G+         R   +          + ++  P  +KP 
Sbjct: 126 GVLASAAGMDKVVMKNIFAEAGLKQAKYASFIRSGWEKDRETAYEKVEEVLGYPCFVKPA 185

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--DVTE 191
             GSS+GI   K  + +     ++  ++   ++++E+ + G E+  GV+G+      V  
Sbjct: 186 NLGSSVGINKCKNREELENAFEEAFQFDR--KIIVEENIVGREVEVGVLGNDEPKCSVVG 243

Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
             VPK DFY Y+ KY   ++  ++PA++  +    ++R A +A Q++   G++R+DF   
Sbjct: 244 EIVPKKDFYDYKSKYIDGDTALIIPAEMTEEESNVIKRDAIVAFQSLDGAGLTRADFFLT 303

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
               +V+  E+N  PG TP S+FP +  + G  + EL+  ++  A
Sbjct: 304 K-DGEVYINEVNTMPGFTPFSMFPLLWQHTGLPYPELIEELIRLA 347


>gi|206977073|ref|ZP_03237973.1| D-alanine--D-alanine ligase [Bacillus cereus H3081.97]
 gi|217957805|ref|YP_002336349.1| D-alanyl-alanine synthetase A [Bacillus cereus AH187]
 gi|229137075|ref|ZP_04265699.1| D-alanine--D-alanine ligase [Bacillus cereus BDRD-ST26]
 gi|229194622|ref|ZP_04321419.1| D-alanine--D-alanine ligase [Bacillus cereus m1293]
 gi|206744722|gb|EDZ56129.1| D-alanine--D-alanine ligase [Bacillus cereus H3081.97]
 gi|217064959|gb|ACJ79209.1| D-alanine--D-alanine ligase [Bacillus cereus AH187]
 gi|228588843|gb|EEK46864.1| D-alanine--D-alanine ligase [Bacillus cereus m1293]
 gi|228646382|gb|EEL02592.1| D-alanine--D-alanine ligase [Bacillus cereus BDRD-ST26]
          Length = 361

 Score =  314 bits (805), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 91/345 (26%), Positives = 156/345 (45%), Gaps = 52/345 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           + +L GG S+E +VSL +  A   AL    F++  I +      V               
Sbjct: 6   LGLLYGGKSAEHQVSLQTALAAIKALNQDKFEIHPIYITEQGQWVRGERIEGEVTDVEVL 65

Query: 46  -----------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
                                        D+ F +LHG  GEDG VQ +LEL+ IPY  +
Sbjct: 66  KMSGAENAISPLSLSTEIIPSANAEENAIDVIFPLLHGPNGEDGTVQGLLELMNIPYVGN 125

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPL 133
           G+LASA  MDK+  K + +  G+         R   +          + ++  P  +KP 
Sbjct: 126 GVLASAAGMDKVVMKNIFAEAGLKQAKYASFIRSGWEKDRETAYEKVEEVLGYPCFVKPA 185

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--DVTE 191
             GSS+GI   K  + +     ++  ++   ++++E+ + G E+  GV+G+      V  
Sbjct: 186 NLGSSVGINKCKNREELENAFEEAFQFDR--KIIVEENIVGREVEVGVLGNDEPKCSVVG 243

Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
             VPK DFY Y+ KY   ++  ++PA++  +    ++R A +A Q++   G++R+DF   
Sbjct: 244 EIVPKKDFYDYKSKYIDGDTALIIPAEMTEEESNVIKRDAIVAFQSLDGAGLTRADFFLT 303

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
               +V+  E+N  PG TP S+FP +  + G  + EL+  ++  A
Sbjct: 304 K-DGEVYINEVNTMPGFTPFSMFPLLWQHTGLPYPELIEELIRLA 347


>gi|42522180|ref|NP_967560.1| D-alanine-D-alanine ligase [Bdellovibrio bacteriovorus HD100]
 gi|81618354|sp|Q6MQ94|DDL_BDEBA RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|39574711|emb|CAE78553.1| D-alanine-D-alanine ligase [Bdellovibrio bacteriovorus HD100]
          Length = 365

 Score =  314 bits (805), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 95/344 (27%), Positives = 167/344 (48%), Gaps = 53/344 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44
           +A++ GG S+E EVSL S K  A AL+   F    I + +                    
Sbjct: 7   VALIFGGKSAEHEVSLRSAKNVADALDKDKFTPVLIGISKEGSWYRFPDMGVFTEATKIV 66

Query: 45  --------------------VLAHLK------PDLAFNVLHGNFGEDGLVQAILELLEIP 78
                               VL  LK       D+AF +LHG  GEDG +Q + +++++P
Sbjct: 67  DSALPSKAEPVALMSLQGKPVLYSLKDHSKTAVDVAFPILHGTMGEDGTIQGLFKMVQLP 126

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLK 134
           +   G+ +SA  MDK   K++++   +P    +L+     +        +  P+ IKP  
Sbjct: 127 FVGCGVWSSAAGMDKEIMKRLLAVAKIPNARYLLLTPHQKNDYNEIVKELGSPFFIKPAN 186

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD---VTE 191
            GSS+G+  IK  +     +    ++    ++L E+++ G E+ C VMG        +  
Sbjct: 187 AGSSVGVHKIKTAEDFV--VKLKDAFQFDTKVLAEEFIQGREVECSVMGHNHAPKASLPG 244

Query: 192 IAVPKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
             +P+ +FYSYE KY   N   + +PA++  +  K VQ++A   +QA+GC G++R DF  
Sbjct: 245 EVIPQHEFYSYEAKYIDDNGALLKIPAELSPETTKAVQKMAEQTYQAMGCDGLTRVDFFI 304

Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            P + +++  EIN  PG T +S++P+M   +G S+++L+  +++
Sbjct: 305 RP-NGELYINEINTIPGFTKISMYPKMWEASGLSYKDLISQLIQ 347


>gi|163938235|ref|YP_001643119.1| D-alanyl-alanine synthetase A [Bacillus weihenstephanensis KBAB4]
 gi|229009735|ref|ZP_04166958.1| D-alanine--D-alanine ligase [Bacillus mycoides DSM 2048]
 gi|229165216|ref|ZP_04293008.1| D-alanine--D-alanine ligase [Bacillus cereus AH621]
 gi|163860432|gb|ABY41491.1| D-alanine--D-alanine ligase [Bacillus weihenstephanensis KBAB4]
 gi|228618248|gb|EEK75281.1| D-alanine--D-alanine ligase [Bacillus cereus AH621]
 gi|228751530|gb|EEM01333.1| D-alanine--D-alanine ligase [Bacillus mycoides DSM 2048]
          Length = 362

 Score =  314 bits (805), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 89/346 (25%), Positives = 155/346 (44%), Gaps = 53/346 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           + +L GG S+E +VSL +  A   AL    F++  I +      +               
Sbjct: 6   LGLLYGGKSAEHQVSLQTALAAIKALNQDKFEIHPIYITEQGQWMRGERIEGEVTNVEAL 65

Query: 47  -------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81
                                         D+ F +LHG  GEDG VQ +LELL IPY  
Sbjct: 66  QMSGEENTISPVSLSTEIIPTATSKQEDAIDVIFPLLHGPNGEDGTVQGLLELLNIPYVG 125

Query: 82  SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKP 132
           +G+LAS+  MDK+  K + +  G+         R   +          + ++  P  +KP
Sbjct: 126 NGVLASSAGMDKVVMKNIFAEAGLKQAKYASFIRSAWEKDRETAYEKVEEVLGYPCFVKP 185

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--DVT 190
              GSS+GI      + +     ++  ++   ++++E+ + G E+  GV+G+      V 
Sbjct: 186 ANLGSSVGINKCNDREELENAFEEAFQFDR--KIIVEENIVGREVEVGVLGNDEPKCSVV 243

Query: 191 EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
              VPK DFY Y+ KY   ++  ++PA++  +    ++R A +A Q++   G++R+DF  
Sbjct: 244 GEIVPKKDFYDYKSKYIDGDTALIIPAEMTEEESNVIKRDAIIAFQSLDGSGLTRADFFL 303

Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                +V+  E+N  PG TP S+FP +  + G  + EL+  ++  A
Sbjct: 304 TK-DGEVYINEVNTMPGFTPFSMFPLLWQHTGLPYPELIEELIRLA 348


>gi|59801867|ref|YP_208579.1| D-alanine--D-alanine ligase [Neisseria gonorrhoeae FA 1090]
 gi|194099345|ref|YP_002002445.1| D-alanine--D-alanine ligase [Neisseria gonorrhoeae NCCP11945]
 gi|239999602|ref|ZP_04719526.1| D-alanine--D-alanine ligase [Neisseria gonorrhoeae 35/02]
 gi|240014777|ref|ZP_04721690.1| D-alanine--D-alanine ligase [Neisseria gonorrhoeae DGI18]
 gi|240017225|ref|ZP_04723765.1| D-alanine--D-alanine ligase [Neisseria gonorrhoeae FA6140]
 gi|240081138|ref|ZP_04725681.1| D-alanine--D-alanine ligase [Neisseria gonorrhoeae FA19]
 gi|240113350|ref|ZP_04727840.1| D-alanine--D-alanine ligase [Neisseria gonorrhoeae MS11]
 gi|240118590|ref|ZP_04732652.1| D-alanine--D-alanine ligase [Neisseria gonorrhoeae PID1]
 gi|240121300|ref|ZP_04734262.1| D-alanine--D-alanine ligase [Neisseria gonorrhoeae PID24-1]
 gi|240124133|ref|ZP_04737089.1| D-alanine--D-alanine ligase [Neisseria gonorrhoeae PID332]
 gi|240126251|ref|ZP_04739137.1| D-alanine--D-alanine ligase [Neisseria gonorrhoeae SK-92-679]
 gi|254494317|ref|ZP_05107488.1| D-alanylalanine synthetase [Neisseria gonorrhoeae 1291]
 gi|268595413|ref|ZP_06129580.1| D-alanine-D-alanine ligase [Neisseria gonorrhoeae 35/02]
 gi|268597249|ref|ZP_06131416.1| D-alanine-D-alanine ligase [Neisseria gonorrhoeae FA19]
 gi|268599424|ref|ZP_06133591.1| D-alanylalanine synthetase [Neisseria gonorrhoeae MS11]
 gi|268604301|ref|ZP_06138468.1| D-alanylalanine synthetase [Neisseria gonorrhoeae PID1]
 gi|268682758|ref|ZP_06149620.1| D-alanylalanine synthetase [Neisseria gonorrhoeae PID332]
 gi|268684832|ref|ZP_06151694.1| D-alanylalanine synthetase [Neisseria gonorrhoeae SK-92-679]
 gi|293398492|ref|ZP_06642670.1| D-alanine-D-alanine ligase [Neisseria gonorrhoeae F62]
 gi|75355611|sp|Q5F6M0|DDL_NEIG1 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|229485968|sp|B4RQC3|DDL_NEIG2 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|59718762|gb|AAW90167.1| putative D-alanine--D-alanine ligase [Neisseria gonorrhoeae FA
           1090]
 gi|193934635|gb|ACF30459.1| D-alanylalanine synthetase [Neisseria gonorrhoeae NCCP11945]
 gi|226513357|gb|EEH62702.1| D-alanylalanine synthetase [Neisseria gonorrhoeae 1291]
 gi|268548802|gb|EEZ44220.1| D-alanine-D-alanine ligase [Neisseria gonorrhoeae 35/02]
 gi|268551037|gb|EEZ46056.1| D-alanine-D-alanine ligase [Neisseria gonorrhoeae FA19]
 gi|268583555|gb|EEZ48231.1| D-alanylalanine synthetase [Neisseria gonorrhoeae MS11]
 gi|268588432|gb|EEZ53108.1| D-alanylalanine synthetase [Neisseria gonorrhoeae PID1]
 gi|268623042|gb|EEZ55442.1| D-alanylalanine synthetase [Neisseria gonorrhoeae PID332]
 gi|268625116|gb|EEZ57516.1| D-alanylalanine synthetase [Neisseria gonorrhoeae SK-92-679]
 gi|291610963|gb|EFF40060.1| D-alanine-D-alanine ligase [Neisseria gonorrhoeae F62]
 gi|317164854|gb|ADV08395.1| D-alanine--D-alanine ligase [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 304

 Score =  314 bits (805), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 105/299 (35%), Positives = 157/299 (52%), Gaps = 7/299 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSERE+SL SG A  +AL+  G      D   +    L       AFN+LHG
Sbjct: 7   VAVLMGGFSSEREISLDSGTAILNALKSKGIDAYAFDPKETPLSELKERGFQTAFNILHG 66

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--M 118
            +GEDG VQ  LELL IPYT SG+ ASA+ MDK R K +  + G+PV    ++   T   
Sbjct: 67  TYGEDGAVQGALELLGIPYTGSGVAASAIGMDKYRCKLIWQALGLPVPEFAVLYDDTDFD 126

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
             +  +  P  +KP   GSS+G++ +K+   +    +     +   +++ E+++ G E +
Sbjct: 127 AVEEKLGLPMFVKPAAEGSSVGVVKVKEKGRLKS--VYEELKHLQGEIIAERFIGGGEYS 184

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQA 237
           C V+    L    I +P ++FY YE KY+  ++ +  P   +       ++ LA    QA
Sbjct: 185 CPVLNGKGLPGIHI-IPATEFYDYEAKYNRDDTIYQCPSEDLTEAEESLMRELAVRGAQA 243

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           IG  G  R DF       K++ LEIN  PGMT  S+ P+ AA  G  F +L + +++ A
Sbjct: 244 IGAEGCVRVDF-LKDTDGKLYLLEINTLPGMTGHSLVPKSAAVTGVGFADLCIEILKAA 301


>gi|86160192|ref|YP_466977.1| D-alanine--D-alanine ligase [Anaeromyxobacter dehalogenans 2CP-C]
 gi|123496862|sp|Q2IG33|DDL_ANADE RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|85776703|gb|ABC83540.1| D-alanine--D-alanine ligase [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 308

 Score =  314 bits (805), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 112/301 (37%), Positives = 165/301 (54%), Gaps = 8/301 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG SSEREVSL +G ACA AL   G  V  +DVD  V   L   + ++AF  LHG
Sbjct: 9   VAVLYGGRSSEREVSLRTGAACAEALRQKGHDVVLVDVDLEVAARLRAERVEVAFVALHG 68

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG +Q +LE + IPYT SG+LASA+ MDK  SK +  S G+ V    +  R    +
Sbjct: 69  RWGEDGSIQGLLESMAIPYTGSGVLASAMGMDKTVSKAIFRSLGLAVADYRVFPRAAAGA 128

Query: 121 ----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
                     P V+KP   GSS+G+ ++     +      ++   +   +++E+YV G E
Sbjct: 129 IGVDDLPFGLPCVVKPAGEGSSVGVHLVNAAAELGPACRDAA--GYAGDVIVERYVKGTE 186

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +   V+   +L   EI VP + FY Y  KY++  + +  PA+IP    + V   A  AH+
Sbjct: 187 VDVAVLEGKALGAIEI-VPANAFYDYAAKYTAGTTKYFYPARIPEAHVRAVMEAAEAAHR 245

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            IGC G++R DF+        + LE+N  PGMT  S+ P++AA  G SF +L   +++ A
Sbjct: 246 GIGCSGVTRVDFIV-AADGTPYILEVNTLPGMTATSLVPKIAAGLGLSFPDLCDRILDGA 304

Query: 297 S 297
           +
Sbjct: 305 A 305


>gi|253316242|ref|ZP_04839455.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus
           str. CF-Marseille]
          Length = 356

 Score =  314 bits (805), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 84/339 (24%), Positives = 151/339 (44%), Gaps = 46/339 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           + ++ GG S+E EVS+ + +   +A++   + V  I +         +            
Sbjct: 6   ICIVFGGKSAEHEVSILTAQNVLNAIDKDKYHVDIIYITNDGDWRKQNNITAEIKSTDEL 65

Query: 49  --------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
                                  +  F +LHG  GEDG +Q + E+L++PY  +G+L++A
Sbjct: 66  HLENGEALEISQLLKESSSGQPYNAVFPLLHGPNGEDGTIQGLFEVLDVPYVGNGVLSAA 125

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSL 139
            SMDK+  KQ+    G+P  P I   R   +             ++ P  +KP   GSS+
Sbjct: 126 SSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYEHNILKLVNDKLNYPVFVKPANLGSSV 185

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKS 197
           GI     +  +   + ++  ++   +L+IEQ V+  E+   V+G+   + T     V   
Sbjct: 186 GISKCNNEAELKEGIKEAFQFDR--KLVIEQGVNAREIEVAVLGNDYPEATWPGEVVKDV 243

Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
            FY Y+ KY        +PA +  D+   ++ +A  A +A  C G+ R+DF       ++
Sbjct: 244 AFYDYKSKYKDGKVQLQIPADLDEDVQLTLRNMALEAFKATDCSGLVRADFFVTE-DNQI 302

Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +  E N  PG T  S++P++    G S+ EL+  ++E A
Sbjct: 303 YINETNAMPGFTAFSMYPKLWENMGLSYPELITKLIELA 341


>gi|225028154|ref|ZP_03717346.1| hypothetical protein EUBHAL_02426 [Eubacterium hallii DSM 3353]
 gi|224954466|gb|EEG35675.1| hypothetical protein EUBHAL_02426 [Eubacterium hallii DSM 3353]
          Length = 353

 Score =  314 bits (805), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 99/344 (28%), Positives = 159/344 (46%), Gaps = 50/344 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           + VLMGG SSE +VSL S K     ++   + V  + + +     L              
Sbjct: 6   IVVLMGGKSSEHDVSLVSAKTVIENIDKDLYNVIMVGITKDGQWKLVDRLDHLEDGSWVN 65

Query: 47  ------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
                                     +  D+ F VLHG  GEDG VQ +LEL  IPY   
Sbjct: 66  SKTSAYICPDTGRKELLLERDGKVDRISIDVVFPVLHGMNGEDGTVQGLLELAAIPYVGC 125

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--------SQHLISPPYVIKPLK 134
           G+LASA SMDK  +K VV S GV     + V R  +          +  +  P  +KP K
Sbjct: 126 GVLASACSMDKFYTKIVVDSIGVRQAKFVGVRRHELTHMDEVVARVEAGVPYPVFVKPSK 185

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI-- 192
            GSS G+   +  + +   L  ++   H  ++L+E+ + G E+ CGV+G      + +  
Sbjct: 186 AGSSQGVSKAENREELIDALNLAA--KHDSKILVEETIVGREIECGVLGMNEPKASGVGE 243

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            +   +FYSY+ KY++  S  V+  ++P    +E+++ A    +A+ C G+SR DF    
Sbjct: 244 VLSAEEFYSYDAKYNNEESRTVVDPELPEGKAEEIRKDAVAIFKALDCSGLSRVDFFLTK 303

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            + +V + EIN  PG T +S++P +    G S + L+  +++ A
Sbjct: 304 DTNEVVFNEINTLPGFTAISMYPMLWEARGLSKKALVQKLIDLA 347


>gi|168208103|ref|ZP_02634108.1| D-alanine--D-alanine ligase [Clostridium perfringens E str.
           JGS1987]
 gi|170660612|gb|EDT13295.1| D-alanine--D-alanine ligase [Clostridium perfringens E str.
           JGS1987]
          Length = 302

 Score =  314 bits (805), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 95/299 (31%), Positives = 163/299 (54%), Gaps = 8/299 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + ++MGGISSEREVSL+SG++  + ++   ++V +I ++    ++      D A   LHG
Sbjct: 3   VGIIMGGISSEREVSLASGESIFNHIDKEKYEVIKIIINNKRDILEKVKGLDFALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFT 117
            FGEDG VQA L++++IPY+  G L+S+L MDK  SK+V+ +  +     I V       
Sbjct: 63  KFGEDGTVQAFLDIMDIPYSGCGALSSSLCMDKNLSKKVLKAENIRTAKWITVKSIEEID 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            D    I  P  +KP  GGSS+    + K + I   +++     + ++++IE +V G E+
Sbjct: 123 YDKIEEIGYPVFVKPNNGGSSVATFKVYKKEEIKDAVMEGL--KYDEEVIIESFVKGREI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC +       + EI   K+DFY Y+ KY++  + H+ P ++   +Y EV+ +A    + 
Sbjct: 181 TCPIFNGELFPILEIK-SKADFYDYKQKYAANGAEHL-PVQLEKSLYDEVKEMALKTFEV 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           + C   +R D +        + LE+N  PGMT  S+FP+ A   G S+ + +  ++E +
Sbjct: 239 LKCEVYARVDMIISE-EGVPYILEVNTLPGMTATSLFPQSAESRGISYSKFIDLIIETS 296


>gi|28210053|ref|NP_780997.1| D-alanyl-alanine synthetase A [Clostridium tetani E88]
 gi|39931118|sp|Q898Z5|DDLB_CLOTE RecName: Full=D-alanine--D-alanine ligase B; AltName:
           Full=D-Ala-D-Ala ligase B; AltName: Full=D-alanylalanine
           synthetase B
 gi|28202488|gb|AAO34934.1| D-alanine--D-alanine ligase [Clostridium tetani E88]
          Length = 358

 Score =  314 bits (805), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 90/331 (27%), Positives = 160/331 (48%), Gaps = 40/331 (12%)

Query: 4   LMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL------------------- 44
           + GG S+E EVS +S  +    +    +++  I + +                       
Sbjct: 26  VFGGQSTEHEVSRNSVTSILKNINRDKYEICPIGITKEGKWFQYTGDINNIKNGQWEKDN 85

Query: 45  ---------VLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
                    VL + + +L F VLHG +GEDG +Q + +L+ +P    G+L+SAL MDK+ 
Sbjct: 86  KNKLENGYNVLFNKEVELVFPVLHGLYGEDGTIQGLCKLVGLPCVGPGVLSSALCMDKIY 145

Query: 96  SKQVVSSCGVPVCPSILVNRFTMDSQ--------HLISPPYVIKPLKGGSSLGIIVIKKD 147
           +K V+ +        ++VN+F  +            +     IKP   GSS+GI      
Sbjct: 146 TKYVLENFKFKQANYVVVNKFEYEKNKEEIIKEVEKLQYDVFIKPANSGSSVGITKAHNK 205

Query: 148 QSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD--VTEIAVPKSDFYSYELK 205
           + +   L    ++ H   +L+E+ ++  E+   V+G+      V    +P  +FY YE K
Sbjct: 206 EELLKGL--EEAFIHDKNVLVEEAINAREIEVAVLGNDDPKAAVPGEIIPAKEFYDYEAK 263

Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           Y + NS  ++PA I     +E++ LA   ++ +GC G++R DFL D  S +V++ E+N  
Sbjct: 264 YQNENSELLIPANIDNIKQEEIKELAIKIYKLLGCSGLARVDFLMDKESNEVYFNEVNTL 323

Query: 266 PGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           PG T +S++P++   +G S+  L+  ++E A
Sbjct: 324 PGFTKISMYPKLWEASGKSYSALIDELIELA 354


>gi|85712531|ref|ZP_01043579.1| D-alanine-D-alanine ligase B [Idiomarina baltica OS145]
 gi|85693665|gb|EAQ31615.1| D-alanine-D-alanine ligase B [Idiomarina baltica OS145]
          Length = 308

 Score =  313 bits (804), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 103/298 (34%), Positives = 157/298 (52%), Gaps = 9/298 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG S+EREVSL SG A  +AL          D        L  L  D AF VLHG
Sbjct: 9   VAVLMGGNSAEREVSLKSGHAVLNALIAQQIDAFAFDPAERPITDLLSLGVDRAFIVLHG 68

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTM 118
             GEDG +Q  L+ L +PYT S +L  AL+MDK+R+KQ+  S  +PV PSI++       
Sbjct: 69  RGGEDGAMQGALQSLNVPYTGSAVLGCALAMDKVRTKQIWQSLHLPVAPSIVIRVGSAQW 128

Query: 119 DSQHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175
           D+  +   +    ++KP   GSS+G+ V  +   +   + ++  +     +L+E++++G 
Sbjct: 129 DAAQILKQLGDKVIVKPALEGSSIGMSVASEAGELDAAIREALRYQSD--VLVERWINGK 186

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
           E T  ++ D +L V  +  P   FY +  KY + ++ +  PA +  +  + ++ LA LA 
Sbjct: 187 EYTVALLNDEALPVIRLQTPH-QFYDFSAKYQANDTQYHCPAGLSDEDEEYLRHLAVLAF 245

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            AI  RG  R D + D    + F LE N  PGMT  S+ P  A   G SF +L+  ++
Sbjct: 246 SAIDGRGWGRIDAMRD-DEGQWFLLEANAVPGMTEKSLVPMAAKQYGLSFEQLVWNIL 302


>gi|302874101|ref|YP_003842734.1| D-alanine/D-alanine ligase [Clostridium cellulovorans 743B]
 gi|307689641|ref|ZP_07632087.1| D-alanine--D-alanine ligase [Clostridium cellulovorans 743B]
 gi|302576958|gb|ADL50970.1| D-alanine/D-alanine ligase [Clostridium cellulovorans 743B]
          Length = 298

 Score =  313 bits (804), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 90/297 (30%), Positives = 142/297 (47%), Gaps = 8/297 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGGISSER VSL SG+     L    ++V  I +D    +V      D AF  LHG
Sbjct: 3   VGVIMGGISSERAVSLKSGEEVVKYLNRNKYEVIPIVIDSKKQVVEKVQGIDFAFIALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL---VNRFT 117
            FGEDG +Q ILE LEIPY+   +L SA+ M+K  +K ++ +  +   P I    V    
Sbjct: 63  KFGEDGTIQGILEALEIPYSGCSVLTSAICMNKGITKSLLQNANINTAPWITVKSVEEID 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            +    +  P  IKP  GGSS+    +K +  +   + +     +  +++IE+Y+ G E+
Sbjct: 123 YEKIKSLGYPVFIKPNNGGSSVATFCVKDEGEVEKAVKEGL--KYDTEVMIEKYIKGEEI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           T  ++         I    S F+ Y  KY    +       +   +  +V  ++      
Sbjct: 181 TSFILNGEVFPTVMIETKSSGFFDYTAKYDDNGAEE-NVVYLKEQLQSQVAEISKKIWDL 239

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           + CR  SR D +    +   + LE+N  PG+TP S+ P+ A   G  F ELL  +++
Sbjct: 240 LYCRSYSRVDMII--SNGIPYVLEVNTLPGLTPHSLIPKSAKAKGMEFSELLDKIIK 294


>gi|312958815|ref|ZP_07773334.1| D-alanylalanine synthetase [Pseudomonas fluorescens WH6]
 gi|311286585|gb|EFQ65147.1| D-alanylalanine synthetase [Pseudomonas fluorescens WH6]
          Length = 364

 Score =  313 bits (804), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 91/348 (26%), Positives = 160/348 (45%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           + ++ GG S+E EVSL S +    AL+ + F+   I +D++    L              
Sbjct: 6   VGIIFGGRSAEHEVSLQSARNIVDALDRSRFEPVLIGIDKAGHWHLNDTSNFLLNSENPA 65

Query: 49  -------------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEI 77
                                             D+ F ++HG  GEDG +Q +L + ++
Sbjct: 66  LIALNQSNRELAVVPGKANQQVVETTGQGVLEHIDVIFPIVHGTLGEDGCLQGLLRMADL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM------DSQHLISPPYVIK 131
           P+  S +L SA+ MDK  SK+++   G+ V P I + R          + + +  P  +K
Sbjct: 126 PFVGSDVLGSAVCMDKDISKRLLRDAGIAVTPFITLTRRNAAHTSFEAAVNRLGLPMFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  +  +      +  +  +   +++L+E  V G E+ C V+G+ +   + 
Sbjct: 186 PANQGSSVGVSKVGSEAEYHAAVELALGF--DEKVLLESAVQGREIECAVLGNDNPIASG 243

Query: 192 IA--VPKSDFYSYELKYSSLN-STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               V  + FYSY+ KY     +  V+PA I  +  + ++RLA  A + +GC G++R D 
Sbjct: 244 CGEIVVSNGFYSYDSKYIDDQAAQVVVPADISHEASERIRRLALEAFEVLGCAGLARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                  +V   EIN  PG T +S++P++   AG S+ EL+  ++E A
Sbjct: 304 FLT-DDGEVLINEINSLPGFTRISMYPKLWQAAGMSYSELVSRLIELA 350


>gi|238921591|ref|YP_002935106.1| hypothetical protein NT01EI_3744 [Edwardsiella ictaluri 93-146]
 gi|238871160|gb|ACR70871.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146]
          Length = 390

 Score =  313 bits (804), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 90/348 (25%), Positives = 164/348 (47%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           + ++ GG S E EVSL S K    A++ + F V+ I +D+     L   +          
Sbjct: 29  VGIVFGGQSCEHEVSLQSAKNIVEAIDQSRFDVTLIGIDKQGYWHLCSGQDYLNHAHDPQ 88

Query: 52  ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
                                             D+ F ++HG  GEDG +Q +L++L +
Sbjct: 89  HIALNHSERRLAVIPGAIQGQLIDSVSGEILPSLDVIFPIVHGTLGEDGCLQGMLKMLNL 148

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVIK 131
           P+  S ++ SA  MDK   K+++   G+P+ P + + R T         +  +     +K
Sbjct: 149 PFVGSDVIGSAACMDKEVCKRLLRDAGLPITPFVTLTRATQTHYNYETLRSQLGETLFVK 208

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  ++        +  +  ++H  ++++E+ V G E+ C ++G+     + 
Sbjct: 209 PANQGSSVGVNKVRNADEYHRAIADALRFDH--KVIVERGVIGHEIECAILGNEVAQASV 266

Query: 192 IA--VPKSDFYSYELKYSSL-NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               V  SDFYSY+ KY S  ++  V+PA +  ++ + V++ A  A QA+ CRG++R D 
Sbjct: 267 CGEIVLHSDFYSYDSKYISAQDAQVVVPAAMAPEVSERVRQTALRAFQALECRGLARVDV 326

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                  +V   EIN  PG T +S++P++   +G S++ L+  ++E A
Sbjct: 327 FVTA-ENEVIINEINTLPGFTNISMYPKLWQASGISYQALITQLIELA 373


>gi|297569924|ref|YP_003691268.1| D-alanine/D-alanine ligase [Desulfurivibrio alkaliphilus AHT2]
 gi|296925839|gb|ADH86649.1| D-alanine/D-alanine ligase [Desulfurivibrio alkaliphilus AHT2]
          Length = 315

 Score =  313 bits (804), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 110/295 (37%), Positives = 169/295 (57%), Gaps = 13/295 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL-KPDLAFNVLH 59
           +A+L GG S EREVSL+  +    A+    + V + D    +  ++A   + D+AF +LH
Sbjct: 9   VALLAGGKSGEREVSLAGAREVEKAINTERYDVRRYDPATDLARLVADAPQLDVAFILLH 68

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G  GEDG +Q +L+LLEIPY  SG+L SAL+MDK  +KQ+    G+ V    +     +D
Sbjct: 69  GPLGEDGSIQGLLDLLEIPYQGSGVLGSALAMDKDLAKQLYRHAGLLVPAWEMAGSADLD 128

Query: 120 SQHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175
                   +  P V+KP++ GSSLG+ ++ +   +   L    +++  DQ+++E+++ G 
Sbjct: 129 DPARLLQSLKLPLVVKPVRQGSSLGMSLVDQPAELVPALKL--AFDFDDQVMVEEFIAGR 186

Query: 176 ELTCGVMGDA---SLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           ELT GV+G+A    L V EI   K   F+ Y+ KY +  +  + PA++P ++  EVQR A
Sbjct: 187 ELTGGVLGNADLTPLPVVEIIPGKEYRFFDYQAKYQAGATREICPAQLPAEVTAEVQRCA 246

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
            LAHQA+  RG SR+D +       ++ LE N  PGMTP S+ P+ AA  G SF 
Sbjct: 247 CLAHQALNLRGYSRTDMIL--AEGGLYVLETNTIPGMTPTSLLPQAAATHGLSFG 299


>gi|52144996|ref|YP_081834.1| D-alanyl-alanine synthetase A [Bacillus cereus E33L]
 gi|51978465|gb|AAU20015.1| D-alanine--D-alanine ligase [Bacillus cereus E33L]
          Length = 361

 Score =  313 bits (804), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 91/345 (26%), Positives = 156/345 (45%), Gaps = 52/345 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           + +L GG S+E +VSL +  A   AL    F++  I +      V               
Sbjct: 6   LGLLYGGKSAEHQVSLQTALAAIKALNQDKFEIHPIYITEQGQWVRGERIEGEVANVEVL 65

Query: 47  ------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
                                        D+ F +LHG  GEDG VQ +LEL+ IPY  +
Sbjct: 66  KMSGAENAISPLSLSTEIIPSANTEENAIDVIFPLLHGPNGEDGTVQGLLELMNIPYVGN 125

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPL 133
           G+LASA  MDK+  K + +  G+         R   +          + ++  P  +KP 
Sbjct: 126 GVLASAAGMDKVVMKNIFAEAGLKQAKYASFIRSGWEKDRETAYEKVEEVLGYPCFVKPA 185

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--DVTE 191
             GSS+GI   K  + +     ++  ++   ++++E+ + G E+  GV+G+      V  
Sbjct: 186 NLGSSVGINKCKNREELENAFEEAFQFDR--KIIVEENIIGREVEVGVLGNDEPKCSVVG 243

Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
             VPK DFY Y+ KY   ++  ++PA++  +    ++R A +A Q++   G++R+DF   
Sbjct: 244 EIVPKKDFYDYKSKYIDGDTALIIPAEMTEEESNVIKRDAIVAFQSLDGAGLTRADFFLT 303

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
               +V+  E+N  PG TP S+FP +  + G  + EL+  ++  A
Sbjct: 304 K-DGEVYINEVNTMPGFTPFSMFPLLWQHTGLPYPELIEELIRLA 347


>gi|240116303|ref|ZP_04730365.1| D-alanine--D-alanine ligase [Neisseria gonorrhoeae PID18]
 gi|240128803|ref|ZP_04741464.1| D-alanine--D-alanine ligase [Neisseria gonorrhoeae SK-93-1035]
 gi|260439880|ref|ZP_05793696.1| D-alanine--D-alanine ligase [Neisseria gonorrhoeae DGI2]
 gi|268601970|ref|ZP_06136137.1| D-alanylalanine synthetase [Neisseria gonorrhoeae PID18]
 gi|268687185|ref|ZP_06154047.1| D-alanylalanine synthetase [Neisseria gonorrhoeae SK-93-1035]
 gi|291043156|ref|ZP_06568879.1| D-alanylalanine synthetase [Neisseria gonorrhoeae DGI2]
 gi|268586101|gb|EEZ50777.1| D-alanylalanine synthetase [Neisseria gonorrhoeae PID18]
 gi|268627469|gb|EEZ59869.1| D-alanylalanine synthetase [Neisseria gonorrhoeae SK-93-1035]
 gi|291012762|gb|EFE04745.1| D-alanylalanine synthetase [Neisseria gonorrhoeae DGI2]
          Length = 304

 Score =  313 bits (804), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 105/299 (35%), Positives = 157/299 (52%), Gaps = 7/299 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSERE+SL SG A  +AL+  G      D   +    L       AFN+LHG
Sbjct: 7   VAVLMGGFSSEREISLDSGTAILNALKSKGIDAYAFDPKETPLSELKERGFQTAFNILHG 66

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--M 118
            +GEDG VQ  LELL IPYT SG+ ASA+ MDK R K +  + G+PV    ++   T   
Sbjct: 67  TYGEDGAVQGALELLGIPYTGSGVAASAIGMDKYRCKLIWQALGLPVPEFAVLYDDTDFD 126

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
             +  +  P  +KP   GSS+G++ +K+   +    +     +   +++ E+++ G E +
Sbjct: 127 AVEEKLGLPMFVKPAAEGSSVGVVKVKEKGRLKS--IYEELKHLQGEIIAERFIGGGEYS 184

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQA 237
           C V+    L    I +P ++FY YE KY+  ++ +  P   +       ++ LA    QA
Sbjct: 185 CPVLNGKGLPGIHI-IPATEFYDYEAKYNRDDTIYQCPSEDLTEAEESLMRELAVRGAQA 243

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           IG  G  R DF       K++ LEIN  PGMT  S+ P+ AA  G  F +L + +++ A
Sbjct: 244 IGAEGCVRVDF-LKDTDGKLYLLEINTLPGMTGHSLVPKSAAVTGVGFADLCIEILKAA 301


>gi|229159399|ref|ZP_04287419.1| D-alanine--D-alanine ligase [Bacillus cereus R309803]
 gi|228624066|gb|EEK80872.1| D-alanine--D-alanine ligase [Bacillus cereus R309803]
          Length = 361

 Score =  313 bits (804), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 91/345 (26%), Positives = 156/345 (45%), Gaps = 52/345 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           + +L GG S+E +VSL +  A   AL    F++  I +      V               
Sbjct: 6   LGLLYGGKSAEHQVSLQTALAAIKALNQDKFEIHPIYITEQGQWVRGERIEGEVTEVEAL 65

Query: 47  ------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
                                        D+ F +LHG  GEDG VQ +LEL+ IPY  +
Sbjct: 66  KMSGAEHAISPLSLSTEIIPSATSEENAIDVIFPLLHGPNGEDGTVQGLLELMNIPYVGN 125

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ---------HLISPPYVIKPL 133
           G+LASA  MDK+  K + +  G+         R   + +          ++  P  +KP 
Sbjct: 126 GVLASAAGMDKVVMKNIFAEAGLKQAKYASFIRSAWEKERETAYEKVEEVLGYPCFVKPA 185

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--DVTE 191
             GSS+GI   K  + +     ++  ++   ++++E+ + G E+  GV+G+      V  
Sbjct: 186 NLGSSVGINKCKDREELENAFEEAFQFDR--KIIVEENIVGREVEVGVLGNDEPKCSVVG 243

Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
             VPK DFY Y+ KY   ++  ++PA++  +    ++R A +A Q++   G++R+DF   
Sbjct: 244 EIVPKKDFYDYKSKYIDGDTALIIPAEMTEEESNVIKRDAIIAFQSLDGAGLTRADFFLT 303

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
               +V+  E+N  PG TP S+FP +  + G  + EL+  ++  A
Sbjct: 304 -QDGEVYINEVNTMPGFTPFSMFPLLWQHTGLPYPELIEELIRLA 347


>gi|320536772|ref|ZP_08036773.1| D-ala D-ala ligase [Treponema phagedenis F0421]
 gi|320146378|gb|EFW37993.1| D-ala D-ala ligase [Treponema phagedenis F0421]
          Length = 368

 Score =  313 bits (804), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 98/354 (27%), Positives = 168/354 (47%), Gaps = 62/354 (17%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           +A++ GG SSE EVSL S  +    +      +  I + +     L +            
Sbjct: 3   IAIMYGGKSSEHEVSLVSATSIVRNINSL-HTIHLIGITKQGTWFLQNQDELMRIRSDEQ 61

Query: 49  -------------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEI 77
                                          L+ D+ F VLHG+FGEDG +Q + E+ E+
Sbjct: 62  AVLQIHTAAENQVSIIPGGGTKGALKVGQRFLETDVIFPVLHGSFGEDGTIQGLFEMAEL 121

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-----------QHLISP 126
           PY   G+LAS+LSMDK ++K +  + G+P+ P   V + T D            +  +  
Sbjct: 122 PYVGCGVLASSLSMDKEKTKNLCQAAGLPIVPFFTVRKNTWDIQSERDLLIQEIEKELDY 181

Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA- 185
           P  +KP + GSS+G  + K    +     ++ SW++  ++L+E  +   E+ C V G+  
Sbjct: 182 PLFVKPCRAGSSVGAGIAKDKNELLSRAEEAFSWDY--KILVEACIPAREIECSVTGNET 239

Query: 186 --SLDVTEIAVPKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
             +    EI +P   FY YE KY+  +   + +PA+I  D  K ++ +A  A++ +   G
Sbjct: 240 CIAYTPGEI-IPSHSFYDYEAKYTDPDGAILKIPAEITDDERKTIREIAMKAYKTLDLSG 298

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            +R DF  D  ++K++  EIN  PG T +S+FP+M A +G  + +L+  +++ A
Sbjct: 299 FARVDFFIDKKTKKIYLNEINTIPGFTSISMFPKMCAASGLPYPDLITLLLQLA 352


>gi|229588254|ref|YP_002870373.1| D-alanyl-alanine synthetase A [Pseudomonas fluorescens SBW25]
 gi|229360120|emb|CAY46974.1| D-alanine--D-alanine ligase A [Pseudomonas fluorescens SBW25]
          Length = 364

 Score =  313 bits (804), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 92/348 (26%), Positives = 156/348 (44%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           + ++ GG S+E EVSL S +    AL+   F+   I +D++    L              
Sbjct: 6   VGIIFGGRSAEHEVSLQSARNIVDALDRTRFEPVLIGIDKAGHWHLNDTSNFLLNQENPA 65

Query: 49  -------------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEI 77
                                             D+ F ++HG  GEDG +Q +L + ++
Sbjct: 66  LIALNQSNRELAVVPGKASQQLVETSGTGLLEHVDVIFPIVHGTLGEDGCLQGLLRMADL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM------DSQHLISPPYVIK 131
           P+  S +L SA+ MDK  SK+++   G+ V P I + R          + + +  P  +K
Sbjct: 126 PFVGSDVLGSAVCMDKDISKRLLRDAGIAVTPFITLTRSNATRTSFDTAVNTLGLPMFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  +  +      +  +  +   +++L+E  V G E+ C V+G+     + 
Sbjct: 186 PANQGSSVGVSKVGTEAEYHAAVELALGF--DEKVLVESAVKGREIECAVLGNEHPIASG 243

Query: 192 IA--VPKSDFYSYELKYSSLN-STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               V  S FYSY+ KY     +  V+PA I  D  + ++ LA  A + +GC G++R D 
Sbjct: 244 CGEIVVSSGFYSYDSKYIDDQAAQVVVPAAISHDASERIRGLAIEAFEVLGCSGLARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                   V   EIN  PG T +S++P++   AG S+ EL+  ++E A
Sbjct: 304 FLT-DDGNVLINEINSLPGFTRISMYPKLWQAAGMSYSELVSRLIELA 350


>gi|283468508|emb|CAP18778.1| putative D-ala D-ala ligase [Akkermansia muciniphila]
          Length = 316

 Score =  313 bits (804), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 105/299 (35%), Positives = 164/299 (54%), Gaps = 10/299 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGF-KVSQIDVDRSVGLVLAHLKPDLAFNVLH 59
           +A+L+GG  +EREVSL SG +   AL  AGF  V+++DV      +    +  LA+N++H
Sbjct: 15  IALLLGGPGAEREVSLVSGNSVYDALCRAGFTDVTKVDVHGPDFRLPEGTE--LAYNIIH 72

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G FGEDG +QAILE   +PYT +G  +SAL  +K  SK+V    GVP   + +++     
Sbjct: 73  GTFGEDGTLQAILEERGVPYTGAGSRSSALCFNKSESKKVFLEAGVPTPHAEILDCSNGI 132

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
               +  P+VIKP   GSS+G+ ++++ + +   + ++    HG  +L+E+++ G ELT 
Sbjct: 133 VMPSLPLPFVIKPPCEGSSVGVHIVRRQEDVLPAMEEAV--THGTTVLVEEFIQGKELTV 190

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSS----LNSTHVLPAKIPLDIYKEVQRLAFLAH 235
           G++   +L V  I  P+S FY    KY        + ++ PA +P +    VQ  A  A+
Sbjct: 191 GILDGKALPVIHI-CPRSGFYDLSNKYPWMNMGGGTDYICPADLPEETAANVQEAALKAY 249

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           +A G     R D L        F LEIN  PGMTP S+ P+ AA +G+ + +L   + E
Sbjct: 250 KAAGVEVYGRVDVLLREEDGAPFVLEINTIPGMTPSSLLPKAAAASGWPYEDLCEKIAE 308


>gi|229131239|ref|ZP_04260145.1| D-alanine--D-alanine ligase [Bacillus cereus BDRD-ST196]
 gi|228652230|gb|EEL08161.1| D-alanine--D-alanine ligase [Bacillus cereus BDRD-ST196]
          Length = 362

 Score =  313 bits (804), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 89/346 (25%), Positives = 155/346 (44%), Gaps = 53/346 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           + +L GG S+E +VSL +  A   AL    F++  I +      +               
Sbjct: 6   LGLLYGGKSAEHQVSLQTALAAIKALNQDKFEIHPIYITEQGQWMRGERIEGEVTNVEAL 65

Query: 47  -------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81
                                         D+ F +LHG  GEDG VQ +LELL IPY  
Sbjct: 66  QMSGEENTISPVSLSTEIIPTATSKQEDAIDVIFPLLHGPNGEDGTVQGLLELLNIPYVG 125

Query: 82  SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKP 132
           +G+LAS+  MDK+  K + +  G+         R   +          + ++  P  +KP
Sbjct: 126 NGVLASSAGMDKVVMKNIFAEAGLKQAKYASFIRSAWEKDRETAYEKVEEVLGYPCFVKP 185

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--DVT 190
              GSS+GI      + +     ++  ++   ++++E+ + G E+  GV+G+      V 
Sbjct: 186 ANLGSSVGINKCNDREELENAFEEAFQFDR--KIIVEENIIGREVEVGVLGNDEPKCSVV 243

Query: 191 EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
              VPK DFY Y+ KY   ++  ++PA++  +    ++R A +A Q++   G++R+DF  
Sbjct: 244 GEIVPKKDFYDYKSKYIDGDTALIIPAEMTEEESNVIKRDAIIAFQSLDGSGLTRADFFL 303

Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                +V+  E+N  PG TP S+FP +  + G  + EL+  ++  A
Sbjct: 304 TK-DGEVYINEVNTMPGFTPFSMFPLLWQHTGLPYPELIEELIRLA 348


>gi|196041059|ref|ZP_03108355.1| D-alanine--D-alanine ligase [Bacillus cereus NVH0597-99]
 gi|196027994|gb|EDX66605.1| D-alanine--D-alanine ligase [Bacillus cereus NVH0597-99]
          Length = 361

 Score =  313 bits (803), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 91/345 (26%), Positives = 156/345 (45%), Gaps = 52/345 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           + +L GG S+E +VSL +  A   AL    F++  I +      V               
Sbjct: 6   LGLLYGGKSAEHQVSLQTALAAIKALNQDKFEIHPIYITEQGQWVRGERIEGEVANVEVL 65

Query: 46  -----------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
                                        D+ F +LHG  GEDG VQ +LEL+ IPY  +
Sbjct: 66  KMSGAENAISPLSLSTEIIPSANAEENAIDVIFPLLHGPNGEDGTVQGLLELMNIPYVGN 125

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPL 133
           G+LASA  MDK+  K + +  G+         R   +          + ++  P  +KP 
Sbjct: 126 GVLASAAGMDKVVMKNIFAEAGLKQAKYASFIRSGWEKDRETAYEKVEEVLGYPCFVKPA 185

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--DVTE 191
             GSS+GI   K  + +     ++  ++   ++++E+ + G E+  GV+G+      V  
Sbjct: 186 NLGSSVGINKCKNREELENAFEEAFQFDR--KIIVEENIIGREVEVGVLGNDEPKCSVVG 243

Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
             VPK DFY Y+ KY   ++  ++PA++  +    ++R A +A Q++   G++R+DF   
Sbjct: 244 EIVPKKDFYDYKSKYIDGDTALIIPAEMTEEESNVIKRDAIVAFQSLDGAGLTRADFFLT 303

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
               +V+  E+N  PG TP S+FP +  + G  + EL+  ++  A
Sbjct: 304 K-DGEVYINEVNTMPGFTPFSMFPLLWQHTGLPYPELIEELIRLA 347


>gi|194363951|ref|YP_002026561.1| D-alanyl-alanine synthetase A [Stenotrophomonas maltophilia R551-3]
 gi|194346755|gb|ACF49878.1| D-alanine/D-alanine ligase [Stenotrophomonas maltophilia R551-3]
          Length = 364

 Score =  313 bits (803), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 87/348 (25%), Positives = 157/348 (45%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           + ++ GG SSE EVSL S K    AL    F+   + +D+     L+             
Sbjct: 6   VGIIFGGKSSEHEVSLQSAKNILDALNRERFEPVLVGIDKQGQWHLSQPDTFLINADDPS 65

Query: 49  -------------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEI 77
                                           + D+   ++HG  GEDG +Q +L +  +
Sbjct: 66  RIALHRSGTSLAVRPGAEQSQLQPSDAASALGQIDVVLPIVHGPLGEDGALQGLLRMANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIK 131
           P+  S +L SA++MDK  +K+++   G+ V P + + R    +  +      +  P  +K
Sbjct: 126 PFVGSPVLGSAVAMDKDVTKRLLRDAGLKVAPWLCIRRHQAAAVDVDAVIAQLGLPLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  +K        L  +  ++H  ++L+E  V G E+ C V+G+     + 
Sbjct: 186 PANQGSSVGVSKVKDAAGFAGALELALRYDH--KVLVESAVVGREIECAVLGNTLPQASL 243

Query: 192 I--AVPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               V   +FY+Y+ KY + +    V+PA I  D    +Q++A  A+QA+ C G++R D 
Sbjct: 244 CGEVVVHDEFYAYDTKYINEDGAEVVVPADIDADTQARIQQIALQAYQALECAGMARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                  ++   E+N  PG T +S++P++   +G  +  L+  ++E A
Sbjct: 304 FLTA-DGEIVINEVNTLPGFTRISMYPKLWGASGVDYTTLITRLIELA 350


>gi|318604546|emb|CBY26044.1| D-alanine--D-alanine ligase [Yersinia enterocolitica subsp.
           palearctica Y11]
          Length = 366

 Score =  313 bits (803), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 94/348 (27%), Positives = 161/348 (46%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP- 51
           + V+ GG S+E EVSL S K    A++   F V+ + +D+            +L    P 
Sbjct: 6   VGVIFGGKSAEHEVSLQSAKNIVDAIDKEKFDVTLLGIDKQGKWHVNDASNYLLNAENPA 65

Query: 52  ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
                                             D+ F ++HG  GEDG +Q +L +  I
Sbjct: 66  LISLNHSNKNVALIPGQEHQQLIATDNASALAQLDVIFPIVHGTLGEDGSLQGLLRMANI 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVIK 131
           P+  SG+L SA+SMDK  +K+++   G+ + P I + R   D+         +  P  IK
Sbjct: 126 PFVGSGVLGSAVSMDKDITKRLLRDAGLNIAPFITLTRANKDNYRFEQVTAKLGLPLFIK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  ++        +  +  ++H  ++L+E  + G E+ C VMG+ +   + 
Sbjct: 186 PANQGSSVGVSKVRNAYEYEQAVALAFDFDH--KVLVESAIVGREIECAVMGNDNPQASL 243

Query: 192 I--AVPKSDFYSYELKYSSL-NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               V   +FYSY+ KY +   +  ++PA I   +   ++ +A  A +A+ CRG++R D 
Sbjct: 244 CGEVVISDEFYSYDTKYINETGAKVIIPASIGSAVSDNIRAVALAAFRALECRGMARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              P   +V   EIN  PG T +S++P++    G    EL+  ++E A
Sbjct: 304 FLTP-DNRVIINEINTLPGFTNISMYPKLWRATGGGSTELITTLIELA 350


>gi|229055075|ref|ZP_04195506.1| D-alanine--D-alanine ligase [Bacillus cereus AH603]
 gi|228721259|gb|EEL72784.1| D-alanine--D-alanine ligase [Bacillus cereus AH603]
          Length = 362

 Score =  313 bits (803), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 89/346 (25%), Positives = 155/346 (44%), Gaps = 53/346 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           + +L GG S+E +VSL +  A   AL    F++  I +      +               
Sbjct: 6   LGLLYGGKSAEHQVSLQTALAAIKALNQDKFEIHPIYITEQGQWMRGERIEGEVTNVEAL 65

Query: 47  -------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81
                                         D+ F +LHG  GEDG VQ +LELL IPY  
Sbjct: 66  QMSGEENTISPVSLSTEIIPTVTSKQEDAIDVIFPLLHGPNGEDGTVQGLLELLNIPYVG 125

Query: 82  SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKP 132
           +G+LAS+  MDK+  K + +  G+         R   +          + ++  P  +KP
Sbjct: 126 NGVLASSAGMDKVVMKNIFAEAGLKQAKYASFIRSAWEKDRETAYEKVEEVLGYPCFVKP 185

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--DVT 190
              GSS+GI      + +     ++  ++   ++++E+ + G E+  GV+G+      V 
Sbjct: 186 ANLGSSVGINKCNDREELENAFEEAFQFDR--KIIVEENIVGREVEVGVLGNDEPKCSVV 243

Query: 191 EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
              VPK DFY Y+ KY   ++  ++PA++  +    ++R A +A Q++   G++R+DF  
Sbjct: 244 GEIVPKKDFYDYKSKYIDGDTALIIPAEMTEEESNVIKRDAIIAFQSLDGSGLTRADFFL 303

Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                +V+  E+N  PG TP S+FP +  + G  + EL+  ++  A
Sbjct: 304 TK-DGEVYINEVNTMPGFTPFSMFPLLWQHTGVPYPELIEELIRLA 348


>gi|302554392|ref|ZP_07306734.1| D-alanyl-alanine synthetase A [Streptomyces viridochromogenes DSM
           40736]
 gi|302472010|gb|EFL35103.1| D-alanyl-alanine synthetase A [Streptomyces viridochromogenes DSM
           40736]
          Length = 385

 Score =  313 bits (803), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 104/363 (28%), Positives = 161/363 (44%), Gaps = 71/363 (19%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +AV+ GG SSE  +S+ +  A   A++   + V  I + +     L    P         
Sbjct: 19  VAVVFGGRSSEHGISVVTAGAVLKAIDRTKYDVLPIGITKDGRWALTADAPERMAIIDRR 78

Query: 52  -----------------------------------------DLAFNVLHGNFGEDGLVQA 70
                                                    D+ F VLHG +GEDG +Q 
Sbjct: 79  QPSVDVLAESDEGGVILPVDPSNREVVYSEPGSVPKALGEVDVVFPVLHGPYGEDGTLQG 138

Query: 71  ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM------------ 118
           +LEL  +PY  SG+LASA+  DK   K+V +S G+ V P ++V                 
Sbjct: 139 LLELSGVPYVGSGVLASAVGQDKDYMKRVFTSFGLKVGPYLVVRPREWRQDEQAARKRIV 198

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           D       P  +KP + GSS+GI  +  D    LD   + +  H  ++L+E  + G E+ 
Sbjct: 199 DFAGDHGWPLFVKPARAGSSIGITKV--DDLAGLDEAIAEAQRHDPKILVEAALRGREIE 256

Query: 179 CGVM----GDASLDVTEIAVPKSD-FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           CGV+    G  +    EI  P +  +Y +E KY   ++  ++PA +  +   EVQRLA  
Sbjct: 257 CGVLEFEDGPRASVPAEIPPPDAHAYYDFEAKY-IDSTPGIVPAPLTPEETAEVQRLAVE 315

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           A +A  C G+ R+DF       +    EIN  PG TP+S++P+M   +G S+ EL+  +V
Sbjct: 316 AFEAASCEGLVRADFFLTE-DGEFVINEINTMPGFTPISMYPQMWQASGVSYPELVDRLV 374

Query: 294 EDA 296
           + A
Sbjct: 375 QAA 377


>gi|30018494|ref|NP_830125.1| D-alanyl-alanine synthetase A [Bacillus cereus ATCC 14579]
 gi|206972242|ref|ZP_03233189.1| D-alanine--D-alanine ligase [Bacillus cereus AH1134]
 gi|218234279|ref|YP_002365072.1| D-alanyl-alanine synthetase A [Bacillus cereus B4264]
 gi|296501057|ref|YP_003662757.1| D-alanyl-alanine synthetase A [Bacillus thuringiensis BMB171]
 gi|39931060|sp|Q81IU1|DDLB_BACCR RecName: Full=D-alanine--D-alanine ligase B; AltName:
           Full=D-Ala-D-Ala ligase B; AltName: Full=D-alanylalanine
           synthetaseB
 gi|29894034|gb|AAP07326.1| D-alanine--D-alanine ligase [Bacillus cereus ATCC 14579]
 gi|206732816|gb|EDZ49991.1| D-alanine--D-alanine ligase [Bacillus cereus AH1134]
 gi|218162236|gb|ACK62228.1| D-alanine--D-alanine ligase [Bacillus cereus B4264]
 gi|296322109|gb|ADH05037.1| D-alanyl-alanine synthetase A [Bacillus thuringiensis BMB171]
          Length = 361

 Score =  313 bits (803), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 90/345 (26%), Positives = 156/345 (45%), Gaps = 52/345 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           + +L GG S+E +VSL +  A   AL    F++  I +      V               
Sbjct: 6   LGLLYGGKSAEHQVSLQTALAAIKALNQDKFEIHPIYITEQGQWVRGERIEGEVTDVEAL 65

Query: 47  ------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
                                        D+ F +LHG  GEDG VQ +LEL+ IPY  +
Sbjct: 66  KMSGAENAISPLSLSTEIIPSAASEENAIDVIFPLLHGPNGEDGTVQGLLELMNIPYVGN 125

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPL 133
           G+LAS+  MDK+  K + +  G+         R   +          +  +  P  +KP 
Sbjct: 126 GVLASSAGMDKVVMKNIFAEAGLKQAKYASFIRSAWEKNREEAYSKVEDKLGYPCFVKPA 185

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--DVTE 191
             GSS+GI   K  + +    +++  ++   ++++E+ + G E+  GV+G+      V  
Sbjct: 186 NLGSSVGINKCKNREELEDAFVEAFQFDR--KIIVEENIVGREVEVGVLGNDEPKCSVVG 243

Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
             VPK DFY Y+ KY   ++  ++PA++  +    ++R A +A Q++   G++R+DF   
Sbjct: 244 EIVPKKDFYDYKSKYIDGDTALIIPAEMTEEESNVIKRDAIIAFQSLDGAGLTRADFFLT 303

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
               +V+  E+N  PG TP S+FP +  + G  + EL+  ++  A
Sbjct: 304 K-DGEVYINEVNTMPGFTPFSMFPLLWQHTGLPYPELIEELIRLA 347


>gi|308387880|pdb|3N8D|A Chain A, Crystal Structure Of Staphylococcus Aureus Vrsa-9
           D-Ala:d-Ala Ligase
 gi|308387881|pdb|3N8D|B Chain B, Crystal Structure Of Staphylococcus Aureus Vrsa-9
           D-Ala:d-Ala Ligase
          Length = 364

 Score =  313 bits (803), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 84/339 (24%), Positives = 150/339 (44%), Gaps = 46/339 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           + ++ GG S+E EVS+ + +   +A++   + V  I +         +            
Sbjct: 6   ICIVFGGKSAEHEVSILTAQNVLNAIDKDKYHVDIIYITNDGDWRKQNNITAEIKSTDEL 65

Query: 49  --------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
                                  D  F +LHG  GEDG +Q + E+L++PY  +G+L++A
Sbjct: 66  HLENGEALEISQLLKESSSGQPYDAVFPLLHGPNGEDGTIQGLFEVLDVPYVGNGVLSAA 125

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSL 139
            SMDK+  KQ+    G+P  P I   R   +             ++ P  +KP   GSS+
Sbjct: 126 SSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYEHNILKLVNDKLNYPVFVKPANLGSSV 185

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKS 197
           GI     +  +   + ++  ++   +L+IEQ V+  E+   V+G+   + T     V   
Sbjct: 186 GISKCNNEAELKEGIKEAFQFDR--KLVIEQGVNAREIEVAVLGNDYPEATWPGEVVKDV 243

Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
            FY Y+ KY        +PA +  D+   ++ +A  A +   C G+ R+DF       ++
Sbjct: 244 AFYDYKSKYKDGKVQLKIPADLDEDVQLTLRNMALEAFKETDCSGLVRADFFVTE-DNQI 302

Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +  E N  PG T  S++P++    G S+ EL+  ++E A
Sbjct: 303 YINETNAMPGFTAFSMYPKLWENMGLSYPELITKLIELA 341


>gi|228919170|ref|ZP_04082544.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228950766|ref|ZP_04112895.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228956668|ref|ZP_04118459.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|229041130|ref|ZP_04189890.1| D-alanine--D-alanine ligase [Bacillus cereus AH676]
 gi|229067989|ref|ZP_04201302.1| D-alanine--D-alanine ligase [Bacillus cereus F65185]
 gi|229077586|ref|ZP_04210228.1| D-alanine--D-alanine ligase [Bacillus cereus Rock4-2]
 gi|229107906|ref|ZP_04237538.1| D-alanine--D-alanine ligase [Bacillus cereus Rock1-15]
 gi|229125740|ref|ZP_04254769.1| D-alanine--D-alanine ligase [Bacillus cereus BDRD-Cer4]
 gi|229143030|ref|ZP_04271468.1| D-alanine--D-alanine ligase [Bacillus cereus BDRD-ST24]
 gi|229176825|ref|ZP_04304227.1| D-alanine--D-alanine ligase [Bacillus cereus 172560W]
 gi|229188504|ref|ZP_04315548.1| D-alanine--D-alanine ligase [Bacillus cereus ATCC 10876]
 gi|228594967|gb|EEK52742.1| D-alanine--D-alanine ligase [Bacillus cereus ATCC 10876]
 gi|228606717|gb|EEK64136.1| D-alanine--D-alanine ligase [Bacillus cereus 172560W]
 gi|228640438|gb|EEK96830.1| D-alanine--D-alanine ligase [Bacillus cereus BDRD-ST24]
 gi|228657713|gb|EEL13522.1| D-alanine--D-alanine ligase [Bacillus cereus BDRD-Cer4]
 gi|228675549|gb|EEL30761.1| D-alanine--D-alanine ligase [Bacillus cereus Rock1-15]
 gi|228705725|gb|EEL58069.1| D-alanine--D-alanine ligase [Bacillus cereus Rock4-2]
 gi|228715127|gb|EEL66990.1| D-alanine--D-alanine ligase [Bacillus cereus F65185]
 gi|228727212|gb|EEL78409.1| D-alanine--D-alanine ligase [Bacillus cereus AH676]
 gi|228803006|gb|EEM49833.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228808906|gb|EEM55396.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228840481|gb|EEM85748.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 364

 Score =  313 bits (803), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 90/345 (26%), Positives = 156/345 (45%), Gaps = 52/345 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           + +L GG S+E +VSL +  A   AL    F++  I +      V               
Sbjct: 9   LGLLYGGKSAEHQVSLQTALAAIKALNQDKFEIHPIYITEQGQWVRGERIEGEVTDVEAL 68

Query: 47  ------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
                                        D+ F +LHG  GEDG VQ +LEL+ IPY  +
Sbjct: 69  KMSGAENAISPLSLSTEIIPSAASEENAIDVIFPLLHGPNGEDGTVQGLLELMNIPYVGN 128

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPL 133
           G+LAS+  MDK+  K + +  G+         R   +          +  +  P  +KP 
Sbjct: 129 GVLASSAGMDKVVMKNIFAEAGLKQAKYASFIRSAWEKNREEAYSKVEDKLGYPCFVKPA 188

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--DVTE 191
             GSS+GI   K  + +    +++  ++   ++++E+ + G E+  GV+G+      V  
Sbjct: 189 NLGSSVGINKCKNREELEDAFVEAFQFDR--KIIVEENIVGREVEVGVLGNDEPKCSVVG 246

Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
             VPK DFY Y+ KY   ++  ++PA++  +    ++R A +A Q++   G++R+DF   
Sbjct: 247 EIVPKKDFYDYKSKYIDGDTALIIPAEMTEEESNVIKRDAIIAFQSLDGAGLTRADFFLT 306

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
               +V+  E+N  PG TP S+FP +  + G  + EL+  ++  A
Sbjct: 307 K-DGEVYINEVNTMPGFTPFSMFPLLWQHTGLPYPELIEELIRLA 350


>gi|118445023|ref|YP_879025.1| D-alanyl-alanine synthetase A [Clostridium novyi NT]
 gi|166198481|sp|A0Q323|DDL_CLONN RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|118135479|gb|ABK62523.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)
           [Clostridium novyi NT]
          Length = 343

 Score =  313 bits (803), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 92/335 (27%), Positives = 164/335 (48%), Gaps = 41/335 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44
           +A+L GG S+E EVS  S  +    ++ + + V  I + +                    
Sbjct: 5   VAILFGGQSTEHEVSRVSASSVLKNIDLSKYDVYPIGITKDGKWFEYTGAIDKIESGEWE 64

Query: 45  ------------VLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
                       +L + + D+ F V+HG +GEDG +Q + +LL IP    G+++SA+ MD
Sbjct: 65  KDEFYKNPNGQEILFNREVDVVFPVMHGLYGEDGTIQGLCKLLTIPCVGPGVMSSAVCMD 124

Query: 93  KMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSLGIIV 143
           K+ +K V+ + GV     ++VN     +         ++ +     IKP   GSS+GI  
Sbjct: 125 KVYTKYVLENFGVKQADYVVVNAHDYKNNKMDIISTIENKLGYDVFIKPSNSGSSVGISK 184

Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV--TEIAVPKSDFYS 201
               + +   L ++  ++   ++L+E  ++  E+   V+G+           VP ++FY 
Sbjct: 185 AHNREELEAGLEEALKFDR--KVLVEVALNAREIEVAVLGNDEPVAATPGEIVPANEFYD 242

Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
           YE KYS+  S  +LPA +  +  ++V+ LA    + + C G+SR DFL D  + +V+  E
Sbjct: 243 YEAKYSNAQSKLLLPANLSPEKLEKVKELAVRIFKMLDCAGMSRVDFLVDKETEEVYLNE 302

Query: 262 INVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           IN  PG T +S++P+M    G ++ EL+  ++E A
Sbjct: 303 INTIPGFTKISMYPKMWQAEGKAYGELISEIIELA 337


>gi|229171080|ref|ZP_04298678.1| D-alanine--D-alanine ligase [Bacillus cereus MM3]
 gi|228612410|gb|EEK69634.1| D-alanine--D-alanine ligase [Bacillus cereus MM3]
          Length = 361

 Score =  313 bits (803), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 91/345 (26%), Positives = 156/345 (45%), Gaps = 52/345 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           + +L GG S+E +VSL +  A   AL    F++  I +      V               
Sbjct: 6   LGLLYGGKSAEHQVSLQTALAAIKALNQDKFEIHPIYITEQGQWVRGERIEGEVTDVEVL 65

Query: 47  ------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
                                        D+ F +LHG  GEDG VQ +LEL+ IPY  +
Sbjct: 66  KMSGAENAISPLSLSTEIIPSAASEENAIDVIFPLLHGPNGEDGTVQGLLELMNIPYVGN 125

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPL 133
           G+LASA  MDK+  K + +  G+         R   +          + ++  P  +KP 
Sbjct: 126 GVLASAAGMDKVVMKNIFAEAGLKQAKYASFIRSAWEKDYETAYEKVEEVLGYPCFVKPA 185

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--DVTE 191
             GSS+GI   K  + +     ++  ++   ++++E+ + G E+  GV+G+      V  
Sbjct: 186 NLGSSVGINKCKNREELENAFEEAFQFDR--KIIVEENIVGREVEVGVLGNDEPKCSVVG 243

Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
             VPK DFY Y+ KY   ++  ++PA++  +    ++R A +A Q++   G++R+DF   
Sbjct: 244 EIVPKKDFYDYKSKYIDGDTALIIPAEMTEEESNVIKRDAIIAFQSLDSAGLTRADFFLT 303

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
               +V+  E+N  PG TP S+FP +  + G  + EL+  ++  A
Sbjct: 304 K-DGEVYINEVNTMPGFTPFSMFPLLWQHTGLPYPELIEELIRLA 347


>gi|49476748|ref|YP_034572.1| D-alanyl-alanine synthetase A [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|196036015|ref|ZP_03103416.1| D-alanine--D-alanine ligase [Bacillus cereus W]
 gi|196046155|ref|ZP_03113382.1| D-alanine--D-alanine ligase [Bacillus cereus 03BB108]
 gi|218901438|ref|YP_002449272.1| D-alanine--D-alanine ligase [Bacillus cereus AH820]
 gi|225862287|ref|YP_002747665.1| D-alanine--D-alanine ligase [Bacillus cereus 03BB102]
 gi|228925491|ref|ZP_04088585.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228931738|ref|ZP_04094639.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228944044|ref|ZP_04106428.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|229089368|ref|ZP_04220644.1| D-alanine--D-alanine ligase [Bacillus cereus Rock3-42]
 gi|229119901|ref|ZP_04249160.1| D-alanine--D-alanine ligase [Bacillus cereus 95/8201]
 gi|229182632|ref|ZP_04309878.1| D-alanine--D-alanine ligase [Bacillus cereus BGSC 6E1]
 gi|49328304|gb|AAT58950.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|195991384|gb|EDX55351.1| D-alanine--D-alanine ligase [Bacillus cereus W]
 gi|196022900|gb|EDX61580.1| D-alanine--D-alanine ligase [Bacillus cereus 03BB108]
 gi|218539969|gb|ACK92367.1| D-alanine--D-alanine ligase [Bacillus cereus AH820]
 gi|225785880|gb|ACO26097.1| D-alanine--D-alanine ligase [Bacillus cereus 03BB102]
 gi|228600840|gb|EEK58414.1| D-alanine--D-alanine ligase [Bacillus cereus BGSC 6E1]
 gi|228663558|gb|EEL19139.1| D-alanine--D-alanine ligase [Bacillus cereus 95/8201]
 gi|228693968|gb|EEL47655.1| D-alanine--D-alanine ligase [Bacillus cereus Rock3-42]
 gi|228815715|gb|EEM61952.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228827918|gb|EEM73651.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228834236|gb|EEM79779.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 361

 Score =  313 bits (803), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 90/345 (26%), Positives = 156/345 (45%), Gaps = 52/345 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           + +L GG S+E +VSL +  A   AL    F++  I +      +               
Sbjct: 6   LGLLYGGKSAEHQVSLQTALAAIKALNQDKFEIHPIYITEQGQWIRGERIEGEVANVEVL 65

Query: 46  -----------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
                                        D+ F +LHG  GEDG VQ +LEL+ IPY  +
Sbjct: 66  KMSGAENAISPLSLSTEIIPSANAEENAIDVIFPLLHGPNGEDGTVQGLLELMNIPYVGN 125

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPL 133
           G+LASA  MDK+  K + +  G+         R   +          + ++  P  +KP 
Sbjct: 126 GVLASAAGMDKVVMKNIFAEAGLKQAKYASFIRSGWEKDRETAYEKVEEVLGYPCFVKPA 185

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--DVTE 191
             GSS+GI   K  + +     ++  ++   ++++E+ + G E+  GV+G+      V  
Sbjct: 186 NLGSSVGINKCKNREELENAFEEAFQFDR--KIIVEENIIGREVEVGVLGNDEPKCSVVG 243

Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
             VPK DFY Y+ KY   ++  ++PA++  +    ++R A +A Q++   G++R+DF   
Sbjct: 244 EIVPKKDFYDYKSKYIDGDTALIIPAEMTEEESNVIKRDAIVAFQSLDGAGLTRADFFLT 303

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
               +V+  E+N  PG TP S+FP +  + G  + EL+  ++  A
Sbjct: 304 K-DGEVYINEVNTMPGFTPFSMFPLLWQHTGLPYPELIEELIRLA 347


>gi|187735167|ref|YP_001877279.1| D-alanine/D-alanine ligase [Akkermansia muciniphila ATCC BAA-835]
 gi|187425219|gb|ACD04498.1| D-alanine/D-alanine ligase [Akkermansia muciniphila ATCC BAA-835]
          Length = 311

 Score =  313 bits (803), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 105/299 (35%), Positives = 164/299 (54%), Gaps = 10/299 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGF-KVSQIDVDRSVGLVLAHLKPDLAFNVLH 59
           +A+L+GG  +EREVSL SG +   AL  AGF  V+++DV      +    +  LA+N++H
Sbjct: 10  IALLLGGPGAEREVSLVSGNSVYDALCRAGFTDVTKVDVHGPDFRLPEGTE--LAYNIIH 67

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G FGEDG +QAILE   +PYT +G  +SAL  +K  SK+V    GVP   + +++     
Sbjct: 68  GTFGEDGTLQAILEERGVPYTGAGSRSSALCFNKSESKKVFLEAGVPTPHAEILDCSNGI 127

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
               +  P+VIKP   GSS+G+ ++++ + +   + ++    HG  +L+E+++ G ELT 
Sbjct: 128 VMPSLPLPFVIKPPCEGSSVGVHIVRRQEDVLPAMEEAV--THGTTVLVEEFIQGKELTV 185

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSS----LNSTHVLPAKIPLDIYKEVQRLAFLAH 235
           G++   +L V  I  P+S FY    KY        + ++ PA +P +    VQ  A  A+
Sbjct: 186 GILDGKALPVIHI-CPRSGFYDLSNKYPWMNMGGGTDYICPADLPEETAANVQEAALKAY 244

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           +A G     R D L        F LEIN  PGMTP S+ P+ AA +G+ + +L   + E
Sbjct: 245 KAAGVEVYGRVDVLLREEDGAPFVLEINTIPGMTPSSLLPKAAAASGWPYEDLCEKIAE 303


>gi|330898548|gb|EGH29967.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. japonica
           str. M301072PT]
          Length = 363

 Score =  313 bits (803), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 92/343 (26%), Positives = 171/343 (49%), Gaps = 53/343 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR--------SVGLVLAHLKP- 51
           +A++ GG SSE EVSL S +   +A++   + ++ I VD+            +L    P 
Sbjct: 5   VAIVFGGQSSEHEVSLQSARNVINAIDRERYALTLIGVDKLGRWLHFDEADYLLNATDPA 64

Query: 52  ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
                                             D+ F ++HG FGEDG +Q +L +L +
Sbjct: 65  RIKLSASGKPLSLLPGSIGGQFVEVESGQPLAAIDVVFPLIHGAFGEDGALQGLLRMLAV 124

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT----MDSQHLISPPYVIKPL 133
           P+  + +L+SA+ MDK  +K+++   G+ V P  +++R       ++   +  P  +KP 
Sbjct: 125 PFVGADVLSSAVCMDKDVTKRLLRDAGIAVAPFRVLSRGDSLSFTEAADQLGLPMFVKPA 184

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI- 192
             GSS+G+  +  +      L     ++H  +LLIEQ + G E+ C V+G+  + V+   
Sbjct: 185 NQGSSVGVSKVSDEAGFAAALALGFEFDH--KLLIEQGIVGREVECAVLGNVDVQVSVCG 242

Query: 193 -AVPKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
             +   +FY+Y+ KY + +   + +PA++P D+  +V+ +A  A++ +GC G+SR DF  
Sbjct: 243 EVIANDEFYAYDTKYLNGDQARIAIPAELPADLSDQVREVALQAYKVLGCAGLSRVDFFV 302

Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
               R +   E+N  PG T +S++P++   +G S+ EL+  ++
Sbjct: 303 TE-GRDIIINEVNTLPGFTSISMYPKLWQASGLSYAELIHRLI 344


>gi|254467845|ref|ZP_05081251.1| D-alanine--D-alanine ligase [beta proteobacterium KB13]
 gi|207086655|gb|EDZ63938.1| D-alanine--D-alanine ligase [beta proteobacterium KB13]
          Length = 299

 Score =  313 bits (803), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 100/297 (33%), Positives = 169/297 (56%), Gaps = 9/297 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +A+L GG S ER++S+ SG A   AL++  ++VS ID   +    L  +  D AF  LHG
Sbjct: 6   IALLSGGDSEERDISIKSGLAVYQALKNLNYEVSLIDPINTDLCSL--VNYDAAFICLHG 63

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q++LELL++P+T S   AS L+M+K  SK V ++  +     +++N+  +D 
Sbjct: 64  KNGEDGKIQSLLELLKVPFTGSASTASMLAMNKYYSKLVWNNHALITPKFLILNKTNLDY 123

Query: 121 QHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
           + +   +S P+++KP   GSS GI ++K    + L    +S   +   ++ E++++G E 
Sbjct: 124 KKIITHLSDPFIVKPSSSGSSFGINLVKNKDDLILAFTDAS--KYDPTVIAEEFIEGREF 181

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           T  ++G+ SL V EI   K++FY Y  KY S  +    P  +  ++ ++++ +A  A  +
Sbjct: 182 TVSILGNKSLGVLEITT-KNEFYDYNAKYVSNETIFSKPTDLNPEVLEKMENIALSAFIS 240

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           IGC G  R DF+ D      + +E+N  PGMT  S+FP  A  AG +F + +  +V+
Sbjct: 241 IGCSGWGRVDFMMDKKFN-FYLIEVNTVPGMTDHSLFPLAARNAGLNFEQTVQHIVD 296


>gi|329298784|ref|ZP_08256120.1| D-alanine/D-alanine ligase [Plautia stali symbiont]
          Length = 364

 Score =  313 bits (802), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 92/348 (26%), Positives = 159/348 (45%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           + ++ G  S+E EVSL S K    A++   + V  + +D+     L              
Sbjct: 6   VGIVFGDKSAEHEVSLQSAKNILEAIDKNKYDVVLLGIDKQGEWHLNDASGFLLNADNPA 65

Query: 50  --------------------------------KPDLAFNVLHGNFGEDGLVQAILELLEI 77
                                             D+   ++HG  GEDG +Q +L +  +
Sbjct: 66  LIAPNRSGENVALVPGSRGEQLITRQQAQPLSPLDVIIPIVHGTLGEDGSLQGLLRMANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN---RFTMDSQHLI---SPPYVIK 131
           P+  S +L SA+SMDK  +K+++   G+ V P + V    R  +D Q +I     P  IK
Sbjct: 126 PFVRSDVLGSAVSMDKDFTKRLLRDAGLKVAPWLSVTQAQRAALDVQAVIARFGLPLFIK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  + +      D     ++    ++LIEQ + G E+ C V+G+ + + + 
Sbjct: 186 PANQGSSVGVSKVTQPDEF--DAALGLAFRFDRKVLIEQGISGREIECAVLGNEAPEASP 243

Query: 192 IA--VPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               V    FYSY+ KY S + T  V+PA I  +  + ++ +A  A QA+ C G++R D 
Sbjct: 244 CGEIVVHDAFYSYDTKYISESGTQVVVPADISTEASEAIRAVAITAFQALECFGMARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                +  +   E+N  PG T +S++P++   AG S+ +L+  ++E A
Sbjct: 304 FLTE-TGDIIVNEVNTLPGFTNISMYPKLWLAAGLSYSDLITRLIELA 350


>gi|311031127|ref|ZP_07709217.1| D-alanyl-alanine synthetase A [Bacillus sp. m3-13]
          Length = 356

 Score =  313 bits (802), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 92/339 (27%), Positives = 159/339 (46%), Gaps = 48/339 (14%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL---------------- 46
           +L GG S+E +VSL +  A   A++   F+V  + +  +                     
Sbjct: 7   LLYGGKSAEHQVSLQTALAVTKAIDTDKFEVYPLYITETGEWKRGGLLNGPAESVHQLKL 66

Query: 47  -----------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
                                  + F +LHG  GEDG VQ +LELL +PY  +G+LAS+ 
Sbjct: 67  EEGGTTIAPLALTYEEETEQTQTVVFPLLHGPNGEDGTVQGMLELLNLPYVGNGVLASSA 126

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSLG 140
            MDK+  K +    G+P        R   +          +  +  P  +KP   GSS+G
Sbjct: 127 GMDKVIMKNLFDQAGLPQVGYAHFLRSEWEKAADTTYEKVESELGYPCFVKPANLGSSVG 186

Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAV--PKS 197
           I   K  + +        ++++  ++++EQ ++G  E+  GV+G+   + + I    PK+
Sbjct: 187 ISKAKNREELETAF--REAFDYDRKIIVEQGLEGAREIEIGVLGNDEPECSVIGEIAPKT 244

Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
           +FY Y+ KY   ++  ++PA+I  DIY++V+ +A  A +AI   G+ R+DF       K+
Sbjct: 245 EFYDYKAKYEDGDTAMIIPAEISEDIYEQVKEMAITAFKAIDGAGLVRADFFLTK-EGKL 303

Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +  E+N  PG TP S+FP +  +   S+ +L+  +V  A
Sbjct: 304 YINEVNTMPGFTPFSMFPLLWQHTDVSYPQLIEKLVGYA 342


>gi|260587560|ref|ZP_05853473.1| D-alanine--D-alanine ligase [Blautia hansenii DSM 20583]
 gi|331084215|ref|ZP_08333321.1| hypothetical protein HMPREF0992_02245 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|260541825|gb|EEX22394.1| D-alanine--D-alanine ligase [Blautia hansenii DSM 20583]
 gi|330402070|gb|EGG81643.1| hypothetical protein HMPREF0992_02245 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 343

 Score =  313 bits (802), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 98/338 (28%), Positives = 163/338 (48%), Gaps = 48/338 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           + VL GG S+EREVS++SG+    AL +   K   +D          +L P         
Sbjct: 3   IIVLAGGNSTEREVSIASGQGVCKALRERNHKAVLLDPYFGASQKEENLFPTEYDVDKAA 62

Query: 52  --------------------------------DLAFNVLHGNFGEDGLVQAILELLEIPY 79
                                           D+ F  LHG  GEDG VQ++L+L+ I Y
Sbjct: 63  DAMREMSSKLEETMKTRKGFFGPNVLEICKEADIVFLALHGANGEDGKVQSVLDLMGIKY 122

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---FTMDSQHLISPPYVIKPLKGG 136
           T SG L+S ++MDK  +K V  + GVP    I + +    +  + + +  P ++KP  GG
Sbjct: 123 TGSGPLSSGMAMDKGITKMVFEAKGVPTPKGITLEKGKCSSQFADYGMGFPVIVKPCCGG 182

Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK 196
           SS+G+ +          LL+  ++++ +++++EQ++ G E +  V+   +  V EIA P 
Sbjct: 183 SSVGVCIANNQTEYQAALLE--AFSYENEVVVEQFITGREFSVAVVDGKAYPVIEIA-PL 239

Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256
             FY Y+ KY + +     PA +   + KE+Q+ A + ++A+  +  +R DFL D     
Sbjct: 240 QGFYDYKNKYQAGSCVETCPADLSSALTKEMQKYAEMGYKALNLQAYARLDFLMDDEGN- 298

Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           ++ LE N  PGMTP S+ P+ A   G  + +L   ++E
Sbjct: 299 MYCLEANTLPGMTPTSLIPQEAKAIGMDYPQLCEKLIE 336


>gi|107021640|ref|YP_619967.1| D-alanine--D-alanine ligase [Burkholderia cenocepacia AU 1054]
 gi|116688585|ref|YP_834208.1| D-alanine--D-alanine ligase [Burkholderia cenocepacia HI2424]
 gi|123245313|sp|Q1BZG1|DDL_BURCA RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|190359118|sp|A0K488|DDL_BURCH RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|105891829|gb|ABF74994.1| D-alanine--D-alanine ligase [Burkholderia cenocepacia AU 1054]
 gi|116646674|gb|ABK07315.1| D-alanine--D-alanine ligase [Burkholderia cenocepacia HI2424]
          Length = 313

 Score =  313 bits (802), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 101/300 (33%), Positives = 154/300 (51%), Gaps = 11/300 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL+SG+     L DAG      D        L       AFN LHG
Sbjct: 12  VAVLFGGESAEREVSLTSGRLVLQGLRDAGVDAHPFDPAERPLSALKDEGFVRAFNALHG 71

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118
            +GE+G +Q  L+   I YT SG+L SAL +DK R+K V    GVP  P   V R     
Sbjct: 72  GYGENGQIQGALDFYGIRYTGSGVLGSALGLDKFRTKLVWQQTGVPTPPFETVMRGDDLA 131

Query: 119 ----DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD- 173
               D    +  P  +KP   GSS+ ++ +K      L    + +  H   +++E+ ++ 
Sbjct: 132 ARATDIVAKLGLPLFVKPASEGSSVAVLKVKTA--DALPAALAEAATHDKIVIVEKSIEG 189

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           G E T  + GD  L + +I VP  +FY Y  KY + ++ +++P  +P +   E++R+A  
Sbjct: 190 GGEYTACIAGDLDLPLIKI-VPAGEFYDYHAKYVADDTQYLIPCGLPAEQETELKRIARR 248

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           A   +GC    R+DF+ D      ++LE+N  PGMT  S+ P+ A   G  + EL++ ++
Sbjct: 249 AFDVLGCTDWGRADFMLDAAGNA-YFLEVNTAPGMTDHSLPPKAARAVGIGYSELVVKVL 307


>gi|330957774|gb|EGH58034.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. maculicola
           str. ES4326]
          Length = 363

 Score =  313 bits (802), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 99/354 (27%), Positives = 176/354 (49%), Gaps = 57/354 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------------------- 40
           +A++ GG SSE EVSL S +   +A++   + ++ I VD+                    
Sbjct: 5   VAIVFGGQSSEHEVSLQSARNVINAIDRERYALTLIGVDKLGRWLRFDEADYLVNANDPA 64

Query: 41  ----------------SVGLVLAHLK-------PDLAFNVLHGNFGEDGLVQAILELLEI 77
                           S G  L  ++        D+ F ++HG FGEDG +Q +L +L I
Sbjct: 65  RIRLSRSGKQLSLLPGSTGGQLVEVETGKPLASIDVVFPLIHGAFGEDGALQGLLRMLAI 124

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT----MDSQHLISPPYVIKPL 133
           P+  + +LASA  MDK  +K+++   G+ V P +++ R       D+   +  P  +KP 
Sbjct: 125 PFVGADVLASAACMDKDVTKRLLRDAGIAVAPFLVLTRGETLAFADAVAQLGLPMFVKPA 184

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI- 192
             GSS+G+  +  +      L     ++H  +LLIEQ + G E+ C V+G+ +  V+   
Sbjct: 185 NQGSSVGVSKVSDEAGFAAALALGFEFDH--KLLIEQGIVGREVECAVLGNHAPQVSVCG 242

Query: 193 -AVPKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
             +   +FY+Y+ KY + +   + +PA++P D+  +V+ +A  A++ +GC G+SR DF  
Sbjct: 243 EVIANDEFYAYDTKYLNGDQARIAIPAEMPADLSDQVRDVALQAYKVLGCAGLSRVDFFV 302

Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV----EDASCLR 300
               R++   E+N  PG T +S++P++   +G S+ EL+  ++    E A   R
Sbjct: 303 TDA-RQIIINEVNTLPGFTSISMYPKLWQASGLSYAELIHRLIVLALERADEAR 355


>gi|311693457|gb|ADP96330.1| D-alanine-D-alanine ligase [marine bacterium HP15]
          Length = 323

 Score =  313 bits (802), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 105/299 (35%), Positives = 161/299 (53%), Gaps = 6/299 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AV MGG S+EREVSL SGKA  +AL  AG     +DV   +   + +   D  F  LHG
Sbjct: 22  VAVFMGGDSAEREVSLKSGKAVLAALVSAGVDAFAVDVRGCLLRTVDNPDFDRVFIALHG 81

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +QAIL    IPYT S +LASAL+MDK+R+K V   CG+P      ++      
Sbjct: 82  RGGEDGTLQAILSQAGIPYTGSDVLASALAMDKLRTKYVFEGCGLPTPKFRTMSGADQAE 141

Query: 121 Q--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           Q    +  P  +KP + GSS+GI  +     +       ++    + +L+E++++G E T
Sbjct: 142 QIIDELRAPLSVKPSREGSSIGIRKVHTAAELAH--AYEAAAALDNLVLVEEWIEGPEFT 199

Query: 179 CGVMGDASLDVTEIAVP-KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
             ++ D +L    ++   +  FY YE KY + ++ + +P  +  +    +Q LA  A + 
Sbjct: 200 VSLLQDRALPAIGLSASTEHVFYDYEAKYLADDTRYRIPCGLAPEDEVRLQHLALEAFRV 259

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +GCR   R D + D    K + LE+N  PGMT  S+ P  A  AG SF EL++ +++D+
Sbjct: 260 VGCRTWGRVDIMQD-SDGKFWLLEVNTVPGMTDHSLVPMAAKAAGISFEELVVRILKDS 317


>gi|229148633|ref|ZP_04276887.1| D-alanine--D-alanine ligase [Bacillus cereus m1550]
 gi|228634891|gb|EEK91466.1| D-alanine--D-alanine ligase [Bacillus cereus m1550]
          Length = 364

 Score =  313 bits (802), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 90/345 (26%), Positives = 156/345 (45%), Gaps = 52/345 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           + +L GG S+E +VSL +  A   AL    F++  I +      V               
Sbjct: 9   LGLLYGGKSAEHQVSLQTALAAIKALNQDKFEIHPIYITEQGQWVRGERIEGEVTDVEAL 68

Query: 47  ------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
                                        D+ F +LHG  GEDG VQ +LEL+ IPY  +
Sbjct: 69  KMSGAENAISPLSLSTEIIPAAASEENAIDVIFPLLHGPNGEDGTVQGLLELMNIPYVGN 128

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPL 133
           G+LAS+  MDK+  K + +  G+         R   +          +  +  P  +KP 
Sbjct: 129 GVLASSAGMDKVVMKNIFAEAGLKQAKYASFIRSAWEKNREEAYSKVEDKLGYPCFVKPA 188

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--DVTE 191
             GSS+GI   K  + +    +++  ++   ++++E+ + G E+  GV+G+      V  
Sbjct: 189 NLGSSVGINKCKNREELEDAFVEAFQFDR--KIIVEENIVGREVEVGVLGNDEPKCSVVG 246

Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
             VPK DFY Y+ KY   ++  ++PA++  +    ++R A +A Q++   G++R+DF   
Sbjct: 247 EIVPKKDFYDYKSKYIDGDTALIIPAEMTEEESNVIKRDAIIAFQSLDGAGLTRADFFLT 306

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
               +V+  E+N  PG TP S+FP +  + G  + EL+  ++  A
Sbjct: 307 K-DGEVYINEVNTMPGFTPFSMFPLLWQHTGLPYPELIEELIRLA 350


>gi|218895357|ref|YP_002443768.1| D-alanine--D-alanine ligase [Bacillus cereus G9842]
 gi|228898974|ref|ZP_04063252.1| D-alanine--D-alanine ligase [Bacillus thuringiensis IBL 4222]
 gi|218541748|gb|ACK94142.1| D-alanine--D-alanine ligase [Bacillus cereus G9842]
 gi|228860667|gb|EEN05049.1| D-alanine--D-alanine ligase [Bacillus thuringiensis IBL 4222]
          Length = 361

 Score =  313 bits (802), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 90/345 (26%), Positives = 156/345 (45%), Gaps = 52/345 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           + +L GG S+E +VSL +  A   AL    F++  I +      V               
Sbjct: 6   LGLLYGGKSAEHQVSLQTALAAIKALNQDKFEIHPIYITEQGQWVRGERIEGEVTDVEAL 65

Query: 47  ------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
                                        D+ F +LHG  GEDG VQ +LEL+ IPY  +
Sbjct: 66  KMSSAENAISPLSLSTEIIPSAASEENAIDVIFPLLHGPNGEDGTVQGLLELMNIPYVGN 125

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPL 133
           G+LAS+  MDK+  K + +  G+         R   +          +  +  P  +KP 
Sbjct: 126 GVLASSAGMDKVVMKNIFAEAGLTQAKYASFIRSAWEKDREEAYSKVEDKLGYPCFVKPA 185

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--DVTE 191
             GSS+GI   K  + +    +++  ++   ++++E+ + G E+  GV+G+      V  
Sbjct: 186 NLGSSVGINKCKNREELENAFVEAFQFDR--KIIVEENIVGREVEVGVLGNDEPKCSVVG 243

Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
             VPK DFY Y+ KY   ++  ++PA++  +    ++R A +A Q++   G++R+DF   
Sbjct: 244 EIVPKKDFYDYKSKYIDGDTALIIPAEMTEEESDVIKRDAIIAFQSLDGAGLTRADFFLT 303

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
               +V+  E+N  PG TP S+FP +  + G  + EL+  ++  A
Sbjct: 304 K-DGEVYINEVNTMPGFTPFSMFPLLWQHTGLPYPELIEELIRLA 347


>gi|71898201|ref|ZP_00680375.1| D-alanine--D-alanine ligase [Xylella fastidiosa Ann-1]
 gi|71731940|gb|EAO33997.1| D-alanine--D-alanine ligase [Xylella fastidiosa Ann-1]
          Length = 320

 Score =  313 bits (802), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 102/302 (33%), Positives = 165/302 (54%), Gaps = 11/302 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL SG+     L   G     +D   ++   L   + D  FNVLHG
Sbjct: 21  VAVLLGGTSAEREVSLLSGRNVLEVLRRRGVDAQSVDGVPALAQALVERRFDRVFNVLHG 80

Query: 61  --NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
               GEDG+VQ +++   +PYT S +L SALSMDK+R+KQV  + G+P      ++    
Sbjct: 81  HNGGGEDGVVQGLMQAFGVPYTGSDVLGSALSMDKVRTKQVWLALGLPTPRYASLSVCAT 140

Query: 119 DSQ-----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
             +      ++  P +IKP K GSS+G+  +   + +   +  ++ +    +LL+EQ ++
Sbjct: 141 AVEVRKAVEMLGFPVIIKPAKEGSSVGVSRVFALEHLEEAVALAARYE--GELLMEQLIE 198

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           G ELT  ++ + +L    I VP+  +Y Y  KY + ++ +V P  +      E+ +LA  
Sbjct: 199 GDELTVSILDEMALPSIRI-VPQGQWYDYNAKYLAEDTQYVCP-GLDDVAEAEIAQLALA 256

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           A  ++GCRG  R D + +  S + F LE+N  PGMT  S+ P+ A+  G  F +L+  ++
Sbjct: 257 AFHSVGCRGWGRVDVMREHGSGRFFLLEVNTAPGMTTHSLVPKAASQLGMGFDDLVWRIL 316

Query: 294 ED 295
           E 
Sbjct: 317 EQ 318


>gi|302388800|ref|YP_003824621.1| D-alanine--D-alanine ligase [Thermosediminibacter oceani DSM 16646]
 gi|302199428|gb|ADL06998.1| D-alanine--D-alanine ligase [Thermosediminibacter oceani DSM 16646]
          Length = 364

 Score =  313 bits (802), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 87/347 (25%), Positives = 163/347 (46%), Gaps = 53/347 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44
           + V+ GG S E EVSL S  +  +A++ + + +  I + +                    
Sbjct: 6   VGVVFGGQSGEYEVSLMSATSIINAMDKSKYDIVPIGITKDGRWHVFLGDVSKIQDGTWV 65

Query: 45  -----------------------VLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81
                                  +      D+ F VLHG  GEDG VQ + EL+ IPY  
Sbjct: 66  DEAIPAFLPPDTGYKCAITLKDGIETRYHLDVIFPVLHGPHGEDGTVQGVFELMNIPYVS 125

Query: 82  SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKP 132
           SG+  SA+ MDK+ +K+++   G+PV    +  +  +         + +     P  +KP
Sbjct: 126 SGVGPSAVCMDKVYTKKLLKQEGLPVVDFKVFYKKDLPHKLTEMVEEVEKSFGYPCFVKP 185

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--DVT 190
              GSS+GI      + +   ++ ++ ++   +LL+E+++   E+ C V+G+      V 
Sbjct: 186 ANLGSSVGITKAHDREELKNAIMHAAEFDR--KLLVERFIPAREIECSVLGNDDPVASVP 243

Query: 191 EIAVPKSDFYSYELKYSSLN-STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
              +P  +FYSY  KY     S  ++PA +  +  ++++ LA  A++A+ C  ++R DFL
Sbjct: 244 GEIIPSEEFYSYTAKYFDGGKSKLLIPAPLAAEETEKIRNLAVRAYKALDCTVMARVDFL 303

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              ++   +  E+N  PG T +S++P++   +G  ++EL+  ++E A
Sbjct: 304 ISKITGVAYINELNTIPGFTKISMYPKLWEASGLPYKELIDRLIELA 350


>gi|228912976|ref|ZP_04076620.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228846671|gb|EEM91679.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 361

 Score =  313 bits (802), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 90/345 (26%), Positives = 156/345 (45%), Gaps = 52/345 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           + +L GG S+E +VSL +  A   AL    F++  I +      +               
Sbjct: 6   LGLLYGGKSAEHQVSLQTALAAIKALNQDKFEIHPIYITEQGQWIRGERIEGEVANVEVL 65

Query: 46  -----------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
                                        D+ F +LHG  GEDG VQ +LEL+ IPY  +
Sbjct: 66  KMSGAENAISPLSLSTEIIPSANAEENAIDVIFPLLHGPNGEDGTVQGLLELMNIPYVGN 125

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPL 133
           G+LASA  MDK+  K + +  G+         R   +          + ++  P  +KP 
Sbjct: 126 GVLASAAGMDKVVMKNIFAEAGLKQAKYASFIRSGWEKDRETAYEKVEEVLGYPCFVKPA 185

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--DVTE 191
             GSS+GI   K  + +     ++  ++   ++++E+ + G E+  GV+G+      V  
Sbjct: 186 NLGSSVGINKCKNREELENAFEEAFQFDR--KIIVEENIIGREVEVGVLGNDEPKCSVVG 243

Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
             VPK DFY Y+ KY   ++  ++PA++  +    ++R A +A Q++   G++R+DF   
Sbjct: 244 EIVPKKDFYDYKSKYIDGDTALIIPAEMTEEESSVIKRDAIVAFQSLDGAGLTRADFFLT 303

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
               +V+  E+N  PG TP S+FP +  + G  + EL+  ++  A
Sbjct: 304 K-DGEVYINEVNTMPGFTPFSMFPLLWQHTGLPYPELIEELIRLA 347


>gi|330981592|gb|EGH79695.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. aptata str.
           DSM 50252]
          Length = 345

 Score =  312 bits (801), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 93/344 (27%), Positives = 172/344 (50%), Gaps = 53/344 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR--------SVGLVLAHLKP- 51
           +A++ GG SSE EVSL S +   +A++   + ++ I VD+            +L    P 
Sbjct: 5   VAIVFGGQSSEHEVSLQSARNVINAIDRERYALTLIGVDKLGRWLHFDEADYLLNATDPA 64

Query: 52  ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
                                             D+ F ++HG FGEDG +Q +L +L +
Sbjct: 65  RIKLSASGKPLSLLPGSVGGQFVEVESGQPLAAIDVVFPLIHGAFGEDGALQGLLRMLAV 124

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT----MDSQHLISPPYVIKPL 133
           P+  + +L+SA+ MDK  +K+++   G+ V P  +++R       ++   +  P  IKP 
Sbjct: 125 PFVGADVLSSAVCMDKDVTKRLLRDAGITVAPFRVLSRGESLSFTEAADQLGLPMFIKPA 184

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI- 192
             GSS+G+  +  +      L     ++H  +LLIEQ + G E+ C V+G+  + V+   
Sbjct: 185 NQGSSVGVSKVSDEAGFAAALALGFEFDH--KLLIEQGIVGREVECAVLGNVDVQVSVCG 242

Query: 193 -AVPKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
             +   +FY+Y+ KY + +   + +PA++P D+  +V+ +A  A++ +GC G+SR DF  
Sbjct: 243 EVIANDEFYAYDTKYLNGDQARIAIPAELPADLSDQVREVALQAYKVLGCAGLSRVDFFV 302

Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
               R +   E+N  PG T +S++P++   +G S+ EL+  +++
Sbjct: 303 TE-GRDIIINEVNTLPGFTSISMYPKLWQASGLSYAELIHRLID 345


>gi|226229301|ref|YP_002763407.1| D-alanine--D-alanine ligase [Gemmatimonas aurantiaca T-27]
 gi|226092492|dbj|BAH40937.1| D-alanine--D-alanine ligase [Gemmatimonas aurantiaca T-27]
          Length = 344

 Score =  312 bits (801), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 113/343 (32%), Positives = 170/343 (49%), Gaps = 48/343 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           + VL+GG+S+ER+VSLSSG   A AL + G +V  +D    V                  
Sbjct: 7   ITVLLGGVSAERDVSLSSGLRIAMALREKGHEVICLDPAEGVLTRETERSLLASGVGSAP 66

Query: 50  -------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84
                                    + D  F  LHG  GEDG +QA+L+++ +PYT SG 
Sbjct: 67  PSLEALAGLESRALSPVLGTLPELTEADCLFLALHGGQGEDGTIQALLDMVGVPYTGSGH 126

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVNR-------FTMDSQHLISPPYVIKPLKGGS 137
           LASAL+MDK  SK V+ S GV     I+             D    +  P V+KP K GS
Sbjct: 127 LASALAMDKHLSKVVLRSAGVATANWIMAPAPDSAETLDADDVGRHLDWPVVVKPSKQGS 186

Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKS 197
           ++G+ +++  + +   +    ++ + D+++IE++V G ELT G++GDA L   EI  P  
Sbjct: 187 TVGLSIVRAPEELAAAV--REAFRYDDEVMIERFVPGRELTVGILGDAVLPTIEIQ-PVK 243

Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
           + Y YE KY+   +   + A++  +   ++   A  A QA+  RG +R DF  DP   + 
Sbjct: 244 ELYDYECKYTPGMAKEFV-AELSPEEASKLADQAKRAFQALKLRGYARIDFRLDPQ-GQP 301

Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           + LE N  PGMTP S+ P+ AA AG  F +L   +V+ A   R
Sbjct: 302 WCLEANTLPGMTPTSLIPQAAAAAGVLFPDLCERIVQLALAKR 344


>gi|118475993|ref|YP_893144.1| D-alanyl-alanine synthetase A [Bacillus thuringiensis str. Al
           Hakam]
 gi|118415218|gb|ABK83637.1| D-alanine--D-alanine ligase [Bacillus thuringiensis str. Al Hakam]
          Length = 367

 Score =  312 bits (801), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 90/345 (26%), Positives = 156/345 (45%), Gaps = 52/345 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           + +L GG S+E +VSL +  A   AL    F++  I +      +               
Sbjct: 12  LGLLYGGKSAEHQVSLQTALAAIKALNQDKFEIHPIYITEQGQWIRGERIEGEVANVEVL 71

Query: 46  -----------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
                                        D+ F +LHG  GEDG VQ +LEL+ IPY  +
Sbjct: 72  KMSGAENAISPLSLSTEIIPSANAEENAIDVIFPLLHGPNGEDGTVQGLLELMNIPYVGN 131

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPL 133
           G+LASA  MDK+  K + +  G+         R   +          + ++  P  +KP 
Sbjct: 132 GVLASAAGMDKVVMKNIFAEAGLKQAKYASFIRSGWEKDRETAYEKVEEVLGYPCFVKPA 191

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--DVTE 191
             GSS+GI   K  + +     ++  ++   ++++E+ + G E+  GV+G+      V  
Sbjct: 192 NLGSSVGINKCKNREELENAFEEAFQFDR--KIIVEENIIGREVEVGVLGNDEPKCSVVG 249

Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
             VPK DFY Y+ KY   ++  ++PA++  +    ++R A +A Q++   G++R+DF   
Sbjct: 250 EIVPKKDFYDYKSKYIDGDTALIIPAEMTEEESNVIKRDAIVAFQSLDGAGLTRADFFLT 309

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
               +V+  E+N  PG TP S+FP +  + G  + EL+  ++  A
Sbjct: 310 K-DGEVYINEVNTMPGFTPFSMFPLLWQHTGLPYPELIEELIRLA 353


>gi|66047146|ref|YP_236987.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. syringae
           B728a]
 gi|63257853|gb|AAY38949.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. syringae
           B728a]
          Length = 363

 Score =  312 bits (801), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 97/354 (27%), Positives = 173/354 (48%), Gaps = 57/354 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR--------SVGLVLAHLKP- 51
           +A++ GG SSE EVSL S +   +A++   + ++ I VD+            +L    P 
Sbjct: 5   VAIVFGGQSSEHEVSLQSARNVINAIDRERYALTLIGVDKLGRWLHFDEADYLLNATDPA 64

Query: 52  ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
                                             D+ F ++HG FGEDG +Q +L +L +
Sbjct: 65  RIKLSASGKPLSLLPGSIGGQFVDVESGQPLAAIDVVFPLIHGAFGEDGALQGLLRMLSV 124

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT----MDSQHLISPPYVIKPL 133
           P+  + +L+SA  MDK  +K+++   G+ V P  +++R       ++   +  P  +KP 
Sbjct: 125 PFVGADVLSSAACMDKDVTKRLLRDAGIAVAPFRVLSRGESLSFTEAADQLGLPMFVKPA 184

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG--DASLDVTE 191
             GSS+G+  +  +      L     ++H  +LLIEQ + G E+ C V+G  DA + V  
Sbjct: 185 NQGSSVGVSKVSDEAGFAAALALGFEFDH--KLLIEQGIVGREVECAVLGNFDAQVSVCG 242

Query: 192 IAVPKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
             +   +FY+Y+ KY + +   + +PA++P D+  +V+ +A  A++ +GC G+SR DF  
Sbjct: 243 EVIANDEFYAYDTKYLNGDQARIAIPAELPADLSDQVRDVALQAYKVLGCAGLSRVDFFV 302

Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV----EDASCLR 300
               R +   E+N  PG T +S++P++   +G S+ EL+  ++    E A   R
Sbjct: 303 TE-GRDIIINEVNTLPGFTSISMYPKLWQASGLSYAELIHRLIVLALERADQAR 355


>gi|169829744|ref|YP_001699902.1| D-alanine--D-alanine ligase B [Lysinibacillus sphaericus C3-41]
 gi|168994232|gb|ACA41772.1| D-alanine--D-alanine ligase B [Lysinibacillus sphaericus C3-41]
          Length = 364

 Score =  312 bits (801), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 90/343 (26%), Positives = 156/343 (45%), Gaps = 50/343 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           + +L GG S+E EVSLS+ +A   AL    ++V  I +                      
Sbjct: 10  IGLLYGGKSAEHEVSLSTARAVTGALNFEEYEVYPIFITSEGEWRRGNRLEKPVSTIEEL 69

Query: 47  ----------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84
                                   ++ D+ F +LHG  GEDG VQ +LE+L +PY  +G+
Sbjct: 70  QFGDNTTILENNITDFLIDEHGNAVQFDVVFPLLHGTNGEDGTVQGLLEVLNLPYVGNGV 129

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH---------LISPPYVIKPLKG 135
           LAS+  MDK+  KQ+    G+P  P     R    ++           ++ P  +KP   
Sbjct: 130 LASSAGMDKVVMKQLFEIAGLPQVPYTYFIRSEWKNEQQTIIERCEKRLTWPMFVKPANL 189

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV- 194
           GSS+GI        +   +    +  +  ++++EQ +   E+   V+G+   +V+     
Sbjct: 190 GSSVGISRATNRDELIKAI--EVALQYDRKIVVEQGIIAREIELAVLGNDYPEVSVPGEI 247

Query: 195 -PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
            P ++FY Y+ KY   ++  ++PA++P +    ++ LA  A +AI   G+ R+DF     
Sbjct: 248 KPVTEFYDYDSKYKDGSTALIIPAELPEETESSLKELAKRAFKAIDGSGLVRADFFVTA- 306

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              V+  E+N  PG TPVS++P +  +   S+ EL+  ++  A
Sbjct: 307 DNSVYINEVNTLPGFTPVSMYPLLWQHTNVSYPELINRLITLA 349


>gi|167838001|ref|ZP_02464860.1| D-alanine--D-alanine ligase B [Burkholderia thailandensis MSMB43]
          Length = 312

 Score =  312 bits (801), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 102/300 (34%), Positives = 154/300 (51%), Gaps = 11/300 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG SSEREVSL+SG+     L DAG      D  +     L       AFN LHG
Sbjct: 12  VAVLLGGESSEREVSLNSGRLVLQGLRDAGIDAHPFDPAQRPLAALKDEGFVRAFNALHG 71

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117
            +GE+G +Q  L+   I YT SG+L SAL +DK R+K V    GVP  P   V R     
Sbjct: 72  GYGENGQIQGALDFYGIRYTGSGVLGSALGLDKFRTKLVWQQTGVPTPPFETVMRGDDYA 131

Query: 118 ---MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD- 173
               D    +  P  +KP   GSS+ +  +K   ++P       +  H   +++E+ ++ 
Sbjct: 132 ARAQDIVAKLGVPLFVKPASEGSSVAVEKVKSADALPA--ALEEAAKHDKIVIVEKSIEG 189

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           G E T  + GD  L + +I VP  +FY Y  KY + ++ +++P  +      E +R+A  
Sbjct: 190 GGEYTACIAGDLDLPLIKI-VPAGEFYDYHAKYVANDTQYLIPCGLDAAREAEFKRVARR 248

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           A   +GC    R+DF+ D      ++LE+N  PGMT  S+ P+ A   G S+ EL++ ++
Sbjct: 249 AFDVLGCADWGRADFMLDAAGN-PYFLEVNTAPGMTDHSLPPKAARAVGISYSELVVKVL 307


>gi|52078991|ref|YP_077782.1| D-alanyl-alanine synthetase A [Bacillus licheniformis ATCC 14580]
 gi|52784363|ref|YP_090192.1| D-alanyl-alanine synthetase A [Bacillus licheniformis ATCC 14580]
 gi|81667017|sp|Q65N65|DDL_BACLD RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|52002202|gb|AAU22144.1| D-alanyl-D-alanine ligase A [Bacillus licheniformis ATCC 14580]
 gi|52346865|gb|AAU39499.1| Ddl [Bacillus licheniformis ATCC 14580]
          Length = 361

 Score =  312 bits (801), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 92/346 (26%), Positives = 151/346 (43%), Gaps = 53/346 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           + ++ GG S+E  VSL +  A   AL+   F +  I +      V               
Sbjct: 5   LGLVYGGKSAEHNVSLQTALAVTKALDTEKFDIHPIYITEKGEWVRGPQLTEPVSNVKML 64

Query: 46  ------------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81
                                         D+ F +LHG  GEDG +Q +LELL +PY  
Sbjct: 65  QFEQTGQTFSPAVLNRDMFPGEADAKEDSIDVVFPLLHGPNGEDGTIQGMLELLNVPYVG 124

Query: 82  SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKP 132
           +G+LAS+  MDK+  K + +  G+     +   + T            +  +  P  +KP
Sbjct: 125 NGVLASSAGMDKVVMKHLFAQAGLDQAKYVSFLKKTWSQSKEECYAQVEGELGYPCFVKP 184

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--DVT 190
              GSS+GI   +  + +        ++ +  ++++E+ V G E+  GV+G+      V 
Sbjct: 185 ANLGSSVGISKCRSREELDQAF--ELAFQYDRKIVVEEGVIGREIELGVLGNDEPVCSVA 242

Query: 191 EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
               PK DFY Y+ KY   ++  ++PA +  D Y+ ++ +A  A QAI   G+ R+DF  
Sbjct: 243 GEIAPKKDFYDYKAKYEDGDTDLIIPASLTEDEYETMRSMAVKAFQAIDGSGLVRADFFL 302

Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
               R V   E+N  PG TP S+FP +   +G  + EL+  +V  A
Sbjct: 303 TNEGR-VLINEVNTMPGFTPFSMFPLLWKQSGVEYAELIEKLVALA 347


>gi|84498310|ref|ZP_00997107.1| D-alanylalanine synthetase [Janibacter sp. HTCC2649]
 gi|84381810|gb|EAP97693.1| D-alanylalanine synthetase [Janibacter sp. HTCC2649]
          Length = 382

 Score =  312 bits (801), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 99/362 (27%), Positives = 162/362 (44%), Gaps = 65/362 (17%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +A++ GG SSE  VS ++  +  SAL+   + V  I + +    VLA   P         
Sbjct: 20  VALVFGGRSSEHAVSCATAASVMSALDPERYDVIPIGIAKDGSWVLAPNDPEPLRLAPGH 79

Query: 52  -------------------------------------DLAFNVLHGNFGEDGLVQAILEL 74
                                                D+ F +LHG FGEDG +Q +L+L
Sbjct: 80  IPEVDASGPSVLVPTSATARHLIVHEPGAAPRELNEVDVVFPLLHGPFGEDGTIQGMLDL 139

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--------DSQHLISP 126
            ++ Y  SG+ ASA+ MDK   K V ++ G+PV P  ++             D+   +  
Sbjct: 140 ADVRYVGSGVTASAVMMDKHMMKVVFAAAGLPVGPYTVITDREWLRDPEAALDAVGALEF 199

Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186
           P  +KP + GSS+GI  +     +   +   ++  H  ++++EQ + G E+ CGV+    
Sbjct: 200 PVFVKPARAGSSMGISKVDSPDGLRAAV--EAAREHDPKVIVEQGIVGREIECGVLDGHG 257

Query: 187 LDVTE-------IAVPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
            D          I V    FY +E KY +  +     PA +  DI +++ ++A +A  A 
Sbjct: 258 TDAPRTSPLGECIVVKGHAFYDFEAKYLADDDIRLEAPADVAPDIAEQIAQMAVIAFTAA 317

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           GC G++R DF     +  +   EIN  PG TP S++P M A AG ++ +L+  ++  A  
Sbjct: 318 GCEGLARCDFFLT-DTGDLLINEINTMPGFTPSSMYPRMWAAAGLTYPQLIDELIALAME 376

Query: 299 LR 300
            R
Sbjct: 377 RR 378


>gi|94263585|ref|ZP_01287395.1| D-alanine--D-alanine ligase [delta proteobacterium MLMS-1]
 gi|93456005|gb|EAT06156.1| D-alanine--D-alanine ligase [delta proteobacterium MLMS-1]
          Length = 314

 Score =  312 bits (801), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 109/295 (36%), Positives = 168/295 (56%), Gaps = 13/295 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLA-HLKPDLAFNVLH 59
           +A+L GG S+EREVSLS       AL  + +++ + D    +  + A     D+AF +LH
Sbjct: 9   VALLAGGKSAEREVSLSGAAGVEKALAGSRYRLRRYDPATDLPRLAADAASIDVAFVLLH 68

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G  GEDG +Q  L+LL IPY  SG+L SAL+MDK  +K++    G+ V    +     + 
Sbjct: 69  GTLGEDGTIQGFLDLLGIPYQGSGVLGSALAMDKDLAKELYRLAGLKVPAWEMARPADIA 128

Query: 120 SQH----LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175
             H    L+SPP V+KP++ GSSLG+ ++  ++ +   L   +++ H DQ+++EQ+V G 
Sbjct: 129 EPHRLLALLSPPLVVKPVRQGSSLGMSIVDAEEELAPAL--ETAFAHDDQVMVEQFVAGR 186

Query: 176 ELTCGVMGDA---SLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           E+T GV+G+    +L V EI   +   F+ Y+ KY    S  V PA++P  +  +VQ  A
Sbjct: 187 EVTGGVLGNDQLTALPVVEIIPGEQYRFFDYQAKYQPGASREVCPAELPPAVTAQVQEWA 246

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
             AH+A+  +G SR+D +       ++ LE N  PGMTP S+FP+ AA  G  F 
Sbjct: 247 CRAHRALRLKGYSRTDMILAADG--LYVLETNTIPGMTPTSLFPQAAAAHGLDFG 299


>gi|126441025|ref|YP_001060533.1| D-alanine--D-alanine ligase [Burkholderia pseudomallei 668]
 gi|190359123|sp|A3NDW2|DDL_BURP6 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|126220518|gb|ABN84024.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei 668]
          Length = 312

 Score =  312 bits (801), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 98/300 (32%), Positives = 151/300 (50%), Gaps = 11/300 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SG+     L DAG      D  +     L       AFN LHG
Sbjct: 12  VAVLLGGDSAEREVSLNSGRLVLQGLRDAGIDAHPFDPAQRPLAALKDEGFVRAFNALHG 71

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117
            +GE+G +Q  L+   I YT SG+L SAL +DK R+K V    G+P  P   V R     
Sbjct: 72  GYGENGQIQGALDFYGIRYTGSGVLGSALGLDKFRTKLVWQQTGIPTPPFETVMRGDDYA 131

Query: 118 ---MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD- 173
               D    +  P  +KP   GSS+ +  +K   ++P       +  H   +++E+ ++ 
Sbjct: 132 ARAQDIAAKLGVPLFVKPASEGSSVAVEKVKSADALPA--ALEEAAKHDKIVIVEKSIEG 189

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           G E T  +  D  L +  I VP  +FY Y  KY + ++ +++P  +      E +R+A  
Sbjct: 190 GGEYTACIAADLDLPLIRI-VPAGEFYDYHAKYIANDTQYLIPCGLDAAKEAEFKRIARR 248

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           A   +GC    R+DF+ D      ++LE+N  PGMT  S+ P+ A   G  + EL++ ++
Sbjct: 249 AFDVLGCTDWGRADFMLDAAGN-PYFLEVNTAPGMTDHSLPPKAARAVGIGYSELVVKVL 307


>gi|170731885|ref|YP_001763832.1| D-alanine--D-alanine ligase [Burkholderia cenocepacia MC0-3]
 gi|190359117|sp|B1JV80|DDL_BURCC RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|169815127|gb|ACA89710.1| D-alanine--D-alanine ligase [Burkholderia cenocepacia MC0-3]
          Length = 313

 Score =  312 bits (801), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 101/300 (33%), Positives = 154/300 (51%), Gaps = 11/300 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL+SG+     L DAG      D        L       AFN LHG
Sbjct: 12  VAVLFGGESAEREVSLTSGRLVLQGLRDAGVDAHPFDPAERPLSALKDEGFVRAFNALHG 71

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118
            +GE+G +Q  L+   I YT SG+L SAL +DK R+K V    GVP  P   V R     
Sbjct: 72  GYGENGQIQGALDFYGIRYTGSGVLGSALGLDKFRTKLVWQQTGVPTPPFETVMRGDDLA 131

Query: 119 ----DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD- 173
               D    +  P  +KP   GSS+ ++ +K      L    + +  H   +++E+ ++ 
Sbjct: 132 ARATDIVAKLGLPLFVKPASEGSSVAVLKVKTA--DALPAALAEAATHDKIVIVEKSIEG 189

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           G E T  + GD  L + +I VP  +FY Y  KY + ++ +++P  +P +   E++R+A  
Sbjct: 190 GGEYTACIAGDLDLPLIKI-VPAGEFYDYHAKYVADDTQYLIPCGLPAEQEAELKRIARR 248

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           A   +GC    R+DF+ D      ++LE+N  PGMT  S+ P+ A   G  + EL++ ++
Sbjct: 249 AFAVLGCTDWGRADFMLDAAGNA-YFLEVNTAPGMTDHSLPPKAARAVGIGYSELVVKVL 307


>gi|291326269|ref|ZP_06123809.2| D-alanine--D-alanine ligase A [Providencia rettgeri DSM 1131]
 gi|291315062|gb|EFE55515.1| D-alanine--D-alanine ligase A [Providencia rettgeri DSM 1131]
          Length = 372

 Score =  312 bits (801), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 89/346 (25%), Positives = 154/346 (44%), Gaps = 55/346 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44
           + V+ GG S+E EVSL S K   + L+   F V  + +++                    
Sbjct: 11  VGVIFGGRSTEHEVSLQSAKNIINGLDRNKFDVCLLGINKEGQWHEYNESDFLLHGDDPS 70

Query: 45  -----------------------VLAHLKP----DLAFNVLHGNFGEDGLVQAILELLEI 77
                                   L   KP    D+ F ++HGN GEDG +Q +L +  +
Sbjct: 71  RIALNTPKRAIALVPGKTSEQFISLEDAKPLPQIDVIFPIVHGNLGEDGSLQGLLRMANL 130

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH------LISPPYVIK 131
           P+   G+L S+  MDK  +K+++   G+ + P I V +    +         +  P  IK
Sbjct: 131 PFVGPGVLGSSACMDKDVTKRLLRDAGLNIAPFITVLKNERATTEYEATVAQLGLPLFIK 190

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+GI  +  +      L    ++    ++LIE  V G E+ C V+G+     + 
Sbjct: 191 PANQGSSVGISKVSTESEFYAAL--DFAFLFDMKVLIESAVKGREIECAVLGNEEPLASP 248

Query: 192 IA--VPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               V    FY+Y  KY     ++ V PA++   +  +++ +A  A++A+ C G+SR D 
Sbjct: 249 CGEIVLHDSFYAYHTKYIDENGASVVAPAQLDAAVSDKIREIALSAYRALNCSGMSRVDV 308

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
                +  V   EIN  PG T +S++P++   AG ++ +L+  ++E
Sbjct: 309 FLTE-NNDVVINEINTLPGFTNISMYPKLWQQAGMTYPQLISRLIE 353


>gi|237654082|ref|YP_002890396.1| D-alanine--D-alanine ligase [Thauera sp. MZ1T]
 gi|237625329|gb|ACR02019.1| D-alanine/D-alanine ligase [Thauera sp. MZ1T]
          Length = 304

 Score =  312 bits (801), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 102/298 (34%), Positives = 153/298 (51%), Gaps = 6/298 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL SG A  +AL+ AG      D       VL     + AF  LHG
Sbjct: 8   VAVLFGGSSAEREVSLMSGAAVLAALQAAGVDAHAFDPAERDLHVLKEEGFERAFIALHG 67

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG VQ  LEL+ IPYT SG++ASALSMDK R+K V  S G+P     ++   +   
Sbjct: 68  RGGEDGTVQGALELMGIPYTGSGVMASALSMDKWRTKMVWLSAGLPTPRYAILEHDSDWD 127

Query: 121 Q--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                +  P  +KP+  GSS+G   + +   +      ++   +   ++ E+++ G ELT
Sbjct: 128 AVVAELGLPIFVKPVHEGSSMGATKVVEAGQLRAAWELAA--RYDRLVIAEEFICGAELT 185

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              + D +L +  I  P    Y Y+ KY + ++ +  P+ +P     E+Q +     + +
Sbjct: 186 APFLEDRALPLVRIVAP-GGNYDYQHKYFTDDTRYDCPSGLPAAQEAELQAMVMKCARVL 244

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           GCRG  R+D +      + + LE+N  PGMT  S+ P  A  AG  F  L L +++ A
Sbjct: 245 GCRGWGRADLILTE-DGRPYLLEMNTSPGMTGHSLVPMSARVAGLDFTALCLEILQGA 301


>gi|167586023|ref|ZP_02378411.1| D-alanine--D-alanine ligase [Burkholderia ubonensis Bu]
          Length = 313

 Score =  312 bits (801), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 102/300 (34%), Positives = 157/300 (52%), Gaps = 11/300 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG+S+EREVSL+SG+     L DAG      D        L       AFN LHG
Sbjct: 12  VAVLLGGVSAEREVSLNSGRLVLQGLRDAGIDAHPFDPAERPLAALKDEGFVRAFNALHG 71

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118
            +GE+G +Q  L+   I YT SG+L SAL +DK R+K V    GVP  P   V R     
Sbjct: 72  GYGENGQIQGALDFYGIRYTGSGVLGSALGLDKFRTKLVWQQTGVPTPPFETVLRGDDLA 131

Query: 119 ----DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD- 173
               +    +  P  +KP   GSS+ ++ +K      L    + +  H   +++E+ ++ 
Sbjct: 132 ARAPEIVAKLGLPLFVKPASEGSSVAVLKVKTA--DALPAALAEAAKHDPIVIVEKSIEG 189

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           G E T  + GD  L V +I VP  +FY Y  KY + ++ +++P  +  D   E++R+A  
Sbjct: 190 GGEYTACIAGDLDLPVIKI-VPAGEFYDYHAKYIADDTQYLIPCGLAADKEAELKRIARR 248

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           A   +GC    R+DF+ D  +   ++LE+N  PGMT  S+ P+ A   G S+ EL++ ++
Sbjct: 249 AFDVLGCTDWGRADFMLDA-NGDAYFLEVNTAPGMTDHSLPPKAARAVGISYSELVVKVL 307


>gi|149377260|ref|ZP_01895007.1| D-alanine-D-alanine ligase B [Marinobacter algicola DG893]
 gi|149358448|gb|EDM46923.1| D-alanine-D-alanine ligase B [Marinobacter algicola DG893]
          Length = 325

 Score =  312 bits (801), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 104/295 (35%), Positives = 159/295 (53%), Gaps = 6/295 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AV +GG S+EREVSL SG+A  SAL  AG     +DV   +   +   + D  F  LHG
Sbjct: 26  VAVFLGGDSAEREVSLKSGQAVLSALVSAGVDAYAVDVRGCLLKTVEEPEFDRVFIALHG 85

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118
             GEDG +QAIL    IP+T S +LASAL+MDK+RSK V   CG+P      +       
Sbjct: 86  RGGEDGTIQAILSQAGIPFTGSDVLASALAMDKLRSKYVFEGCGLPTPKFRAMASAEEAG 145

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                +S P  +KP + GSS+GI  +  +Q +     Q+++      +L+E++++G E T
Sbjct: 146 SLLQSLSLPLSVKPSREGSSIGIRKVNSEQELVEAYTQAAAL--DPLVLVEEWIEGPEFT 203

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             ++ D +L    +      FY Y+ KY + ++ + +P  +  D   ++Q LA  A + +
Sbjct: 204 VSLLQDQALPAIGLCTDHV-FYDYDAKYLADDTRYQIPCGLDPDSELKLQHLALDAFRVL 262

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           GCR   R D + D    + + LE+N  PGMT  S+ P  A  AG SF EL++ ++
Sbjct: 263 GCRTWGRVDIMQDRQ-GEFWILEVNTVPGMTDHSLVPMSARAAGISFEELVVRIL 316


>gi|326795768|ref|YP_004313588.1| D-alanine--D-alanine ligase [Marinomonas mediterranea MMB-1]
 gi|326546532|gb|ADZ91752.1| D-alanine--D-alanine ligase [Marinomonas mediterranea MMB-1]
          Length = 315

 Score =  312 bits (801), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 96/304 (31%), Positives = 161/304 (52%), Gaps = 11/304 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-----DRSVGLVLAHLKPDLAF 55
           +AVL GG  +EREVSL SG    +AL+  G+    ID+     DR+    L     D+AF
Sbjct: 8   IAVLYGGRCAEREVSLESGGLILNALKQKGYDAFGIDLYGARHDRNPIDQLRAEPFDIAF 67

Query: 56  NVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI--LV 113
             LHG  GEDG +QA+L+L+  PYT S  LA AL+MDK+ +K++    G+P    I    
Sbjct: 68  IGLHGGEGEDGHIQALLDLMSKPYTGSRQLACALAMDKLMTKKLWKGLGIPTPDYIADAS 127

Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
           +      +  +S P ++KP + GS++GI      + +   L    +  +  ++L+E++++
Sbjct: 128 DVSVECVERQLSYPVIVKPSREGSTIGISKADNTEQLMQAL--RDAREYDSEILVEEFIE 185

Query: 174 GIELTCGVMGDASLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
           G E T  ++ D +     +   +    Y YE KY + ++ + LP+ +  D    ++ L+ 
Sbjct: 186 GPEFTVSIINDEAYPAIGLKPSEDHQLYDYEAKYLADDTEYRLPSGLSDDDESRLKALSL 245

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
            A+ A+GC+G  R D +    +     LE+N  PGMT  S+ P  AA+ G S+++L+  +
Sbjct: 246 DAYLAVGCKGWGRVDVM-RRNNGDFSVLEVNTSPGMTSHSLVPMAAAHVGISYQDLVEKI 304

Query: 293 VEDA 296
           +  A
Sbjct: 305 LCSA 308


>gi|169342530|ref|ZP_02863584.1| D-alanine--D-alanine ligase [Clostridium perfringens C str.
           JGS1495]
 gi|169299302|gb|EDS81369.1| D-alanine--D-alanine ligase [Clostridium perfringens C str.
           JGS1495]
          Length = 302

 Score =  312 bits (801), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 94/299 (31%), Positives = 163/299 (54%), Gaps = 8/299 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + ++MGGISSEREVSL+SG++  + ++   ++V +I ++    ++      D A   LHG
Sbjct: 3   VGIIMGGISSEREVSLASGESIFNHIDKEKYEVIKIIINNKRDILEKVKGLDFALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFT 117
            FGEDG VQA L++++IPY+  G L+S+L MDK  SK+V+ +  +     I V       
Sbjct: 63  KFGEDGTVQAFLDIMDIPYSGCGALSSSLCMDKNLSKKVLKAENIRTAKWITVKSIEEID 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            +    I  P  +KP  GGSS+    + K + I   +++     + ++++IE +V G E+
Sbjct: 123 YEKIEEIGYPVFVKPNNGGSSVATFKVYKKEDIKDAVMEGL--KYDEEVIIESFVKGREI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC +       + EI   K+DFY Y+ KY++  + H+ P ++   +Y EV+ +A    + 
Sbjct: 181 TCPIFNGELFPILEIK-SKADFYDYKQKYAANGAEHL-PVQLEKSLYDEVKEMALKTFEV 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           + C   +R D +        + LE+N  PGMT  S+FP+ A   G S+ + +  ++E +
Sbjct: 239 LKCEVYARVDMIISE-EGVPYILEVNTLPGMTATSLFPQSAESIGISYSKFIDLIIETS 296


>gi|75760676|ref|ZP_00740702.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|74491826|gb|EAO55016.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
          Length = 367

 Score =  312 bits (801), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 90/345 (26%), Positives = 156/345 (45%), Gaps = 52/345 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           + +L GG S+E +VSL +  A   AL    F++  I +      V               
Sbjct: 12  LGLLYGGKSAEHQVSLQTALAAIKALNQDKFEIHPIYITEQGQWVRGERIEGEVTDVEAL 71

Query: 47  ------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
                                        D+ F +LHG  GEDG VQ +LEL+ IPY  +
Sbjct: 72  KMSSAENAISPLSLSTEIIPSAASEENAIDVIFPLLHGPNGEDGTVQGLLELMNIPYVGN 131

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPL 133
           G+LAS+  MDK+  K + +  G+         R   +          +  +  P  +KP 
Sbjct: 132 GVLASSAGMDKVVMKNIFAEAGLTQAKYASFIRSAWEKDREEAYSKVEDKLGYPCFVKPA 191

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--DVTE 191
             GSS+GI   K  + +    +++  ++   ++++E+ + G E+  GV+G+      V  
Sbjct: 192 NLGSSVGINKCKNREELENAFVEAFQFDR--KIIVEENIVGREVEVGVLGNDEPKCSVVG 249

Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
             VPK DFY Y+ KY   ++  ++PA++  +    ++R A +A Q++   G++R+DF   
Sbjct: 250 EIVPKKDFYDYKSKYIDGDTALIIPAEMTEEESDVIKRDAIIAFQSLDGAGLTRADFFLT 309

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
               +V+  E+N  PG TP S+FP +  + G  + EL+  ++  A
Sbjct: 310 K-DGEVYINEVNTMPGFTPFSMFPLLWQHTGLPYPELIEELIRLA 353


>gi|168212545|ref|ZP_02638170.1| D-alanine--D-alanine ligase [Clostridium perfringens CPE str.
           F4969]
 gi|170716043|gb|EDT28225.1| D-alanine--D-alanine ligase [Clostridium perfringens CPE str.
           F4969]
          Length = 302

 Score =  312 bits (800), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 94/299 (31%), Positives = 163/299 (54%), Gaps = 8/299 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + ++MGGISSEREVSL+SG++  + ++   ++V +I ++    ++      D A   LHG
Sbjct: 3   VGIIMGGISSEREVSLASGESIFNHIDKEKYEVIKIIINNKRDILEKVKGLDFALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFT 117
            FGEDG VQA L++++IPY+  G L+S+L MDK  SK+V+ +  +     I V       
Sbjct: 63  KFGEDGTVQAFLDIMDIPYSGCGALSSSLCMDKNLSKKVLKAENIRTAKWITVKSIEEID 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            D    I  P  +KP  GGSS+    + K + I   +++     + ++++IE ++ G E+
Sbjct: 123 YDKIEEIGYPVFVKPNNGGSSVATFKVYKKEDIKNSVMEGL--KYDEEVIIESFIKGREI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC +       + EI   K+DFY Y+ KY++  + H+ P ++   +Y EV+ +A    + 
Sbjct: 181 TCPIFNGEFFPILEIK-SKADFYDYKQKYAANGAEHL-PVQLEKSLYDEVKEMALKTFEV 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           + C   +R D +        + LE+N  PGMT  S+FP+ A   G S+ + +  ++E +
Sbjct: 239 LKCEVYARVDMIISE-EGVPYILEVNTLPGMTATSLFPQSAESRGISYSKFIDLIIETS 296


>gi|296116440|ref|ZP_06835054.1| D-alanine--D-alanine ligase [Gluconacetobacter hansenii ATCC 23769]
 gi|295977033|gb|EFG83797.1| D-alanine--D-alanine ligase [Gluconacetobacter hansenii ATCC 23769]
          Length = 314

 Score =  312 bits (800), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 128/310 (41%), Positives = 189/310 (60%), Gaps = 13/310 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL---KPDLAFNV 57
           ++VLMGG+S+EREVSL SG     AL   G+ V Q+     +G +++ L   +PD+ FN 
Sbjct: 6   ISVLMGGMSAEREVSLKSGAGVTDALRSLGYPVRQVIAGEDLGALVSELTTHRPDVVFNA 65

Query: 58  LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117
           LHG FGEDG +Q +L+ + I YTHSG+  SA++MDK  ++ V ++ G+PV    +V    
Sbjct: 66  LHGRFGEDGSIQGVLDWMGIAYTHSGVRTSAVAMDKAAARAVFTAAGLPVARGTVVAMSE 125

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
           +++   +  PYVIKPL  GSS+G+ +I+   +    +  + SW  G   L+E+++ G EL
Sbjct: 126 LEAADPLPVPYVIKPLNEGSSVGVHIIRAGANTRASI--ARSWRFGTSALVEEFIPGREL 183

Query: 178 TCGVMGDASLDVTEIAVPKS---DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
           T GVMGD +L VT+I         FY Y+ KY    S+HVLPA+I  D ++  + LA  A
Sbjct: 184 TVGVMGDRALTVTDITPRDDGGNGFYDYDAKYQQGGSSHVLPARIHPDAFEHARALALAA 243

Query: 235 HQAIGCRGISRSDFLFDPL-----SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           H+A+GCRG SR+DF +D       + ++  LE N QPGMT  S+ PE AA  G ++ +L 
Sbjct: 244 HRALGCRGASRTDFRYDDTRDPDGAGRLVILETNTQPGMTETSLLPEQAAACGVAYPQLC 303

Query: 290 LWMVEDASCL 299
            W+VE A+C 
Sbjct: 304 QWLVEQATCR 313


>gi|291544035|emb|CBL17144.1| D-alanine--D-alanine ligase [Ruminococcus sp. 18P13]
          Length = 357

 Score =  312 bits (800), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 94/347 (27%), Positives = 156/347 (44%), Gaps = 54/347 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           +AV+ GG+SSE +VSL S       +    ++V  I + +    +               
Sbjct: 6   VAVVFGGVSSEHDVSLVSATNVIENIPQDKYEVMCIGITKKGRWLYYPGDTAAIASGEWE 65

Query: 46  --------------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPY 79
                                         K D+ F VLHG  GEDG +Q +++L  IPY
Sbjct: 66  RDPDCISAVLSPDPLHGGFLLIENGEATVRKVDVVFPVLHGKNGEDGTIQGLMDLARIPY 125

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--------QHLISPPYVIK 131
              G+LASA  MDK+ +  V+    +      ++ +  ++            +  P  +K
Sbjct: 126 VGCGLLASASCMDKVHTHTVLDYNKIRTARWRMIGQRDLNRLDACCAQIGEELGYPLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG--DASLDV 189
           P   GSS+GI      +++   +    +++H ++++IE+++ G EL   V G  +     
Sbjct: 186 PANCGSSIGINKATDAETLKDAVKI--AFSHDNKVVIEEFIQGKELEVAVFGYDNPFASF 243

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
                P +DFY YE KY    S   +PA+I  D  KE++  A  A++A+GC+G+SR DF 
Sbjct: 244 VGEIEPCNDFYDYEAKYILGTSKLYIPARIDADSEKEIRETAVAAYKALGCKGLSRVDFF 303

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                  V   EIN  PG TP+S++P++    G S+  L+  ++E A
Sbjct: 304 L-KQDGTVILNEINTMPGFTPISMYPKLMENLGMSYSYLIDKLLEQA 349


>gi|291288101|ref|YP_003504917.1| D-alanine/D-alanine ligase [Denitrovibrio acetiphilus DSM 12809]
 gi|290885261|gb|ADD68961.1| D-alanine/D-alanine ligase [Denitrovibrio acetiphilus DSM 12809]
          Length = 298

 Score =  312 bits (800), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 100/296 (33%), Positives = 161/296 (54%), Gaps = 8/296 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG+S+EREVSL SG+A   +L   G+K   ID+DR V   ++    D+ F  LHG
Sbjct: 6   VAVLYGGMSAEREVSLRSGQAAYDSLVRLGYKTVLIDMDRDVAQKISEAGADVCFIALHG 65

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG VQ +L+++ +PYT S   A+ ++ DK+ SK+     GV     I +N      
Sbjct: 66  TYGEDGRVQGMLDIIGMPYTGSSYQANMVAFDKLLSKERFIKGGVTTPDYIELN---APK 122

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           + +     VIKP + GSS+GI +++ ++     L    ++ +  ++++E+ + G+ELT  
Sbjct: 123 KGMPFECCVIKPARQGSSVGIHIVQNEEEYFSKL--EDAFKYDSKVIVEECIKGVELTVS 180

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           ++   +L V  I  PK   Y YE KY+   + +V    +     + V+  A  A   +GC
Sbjct: 181 ILDGETLPVICIR-PKKGVYDYESKYTKGMTEYVFDTGLSASETECVENAAMKAFDVLGC 239

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            G  R+D ++D   R  + LE+N  PGMT  S+ P+ A  AG SF  ++  M+  A
Sbjct: 240 SGYGRADIMYD--GRTPYVLEVNTLPGMTETSLLPKAANKAGMSFDNMVEKMLLGA 293


>gi|256827952|ref|YP_003156680.1| D-alanine/D-alanine ligase [Desulfomicrobium baculatum DSM 4028]
 gi|256577128|gb|ACU88264.1| D-alanine/D-alanine ligase [Desulfomicrobium baculatum DSM 4028]
          Length = 302

 Score =  312 bits (800), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 105/302 (34%), Positives = 155/302 (51%), Gaps = 5/302 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSV-GLVLAHLKPDLAFNVLH 59
           + ++ GG S EREV+LS  +     L   G +V+  D  R + GL  A    + AF  LH
Sbjct: 3   ILLIAGGWSGEREVALSGARQIEKGLLTLGHQVTHFDPARDLRGLYEAAAGHEFAFINLH 62

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR-FTM 118
           G+ GEDGLVQ +LE + +PY  S   AS L+++K  SKQ+  + G+P      V      
Sbjct: 63  GSPGEDGLVQCLLERIGMPYQGSDSRASLLALNKAVSKQIFEAAGLPTPAWEFVPASHVA 122

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           + + L+  P V+KP  GGSSLG+ ++  +  +   L Q         LL E  + G ELT
Sbjct: 123 EWRPLLPFPLVVKPNTGGSSLGVGIVASEDELEAYLAQPEIAGQD--LLAEALIRGQELT 180

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           CGV+    L    I     +F+ YE KY +  +  + PA IP ++ + +Q +A  AH A+
Sbjct: 181 CGVLEGCVLPPILIRPKSGEFFDYESKYVAGATEEICPAPIPAELTERLQVMARAAHDAL 240

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           G    SR+DF+        + LE+N  PGMT  S+ P+ A   G SF +LL  ++E    
Sbjct: 241 GLSDYSRADFMVTA-DGMPYLLEVNTLPGMTATSLLPQEAQAVGLSFEQLLTRLIELGLR 299

Query: 299 LR 300
            R
Sbjct: 300 KR 301


>gi|167614186|gb|ABZ89692.1| D-alanine--D-alanine ligase [Buchnera aphidicola]
          Length = 305

 Score =  312 bits (800), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 100/303 (33%), Positives = 165/303 (54%), Gaps = 13/303 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG SSER++S+ SG A   +L  +G     +D      + L     D A+  LHG
Sbjct: 4   IAVLLGGNSSERQISIKSGYAILESLLRSGLNAYPVDTRDFPIIQLKKQGFDSAYIALHG 63

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117
             GEDG +Q +LE L IPYT SGI++SA+S+DK R+K +  S  +PV P + + +     
Sbjct: 64  KGGEDGSIQGVLEYLNIPYTGSGIMSSAISLDKWRTKLLWKSSSLPVLPDVYLKKKDISQ 123

Query: 118 ------MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +     +  P VIKP   GSS+GI ++     +   +  ++++N+   ++IE++
Sbjct: 124 YTYPSILKKILQLKFPVVIKPNNSGSSIGITIVHYQDLLIDSI--NAAFNYSSDIIIEKF 181

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           ++G E T  ++    L   +I   K+ FY Y  KY   ++ ++ P+++     KE++ +A
Sbjct: 182 IEGREYTVSILNKKILPPVKIIT-KNHFYDYRAKYIESSTEYLCPSELHHQKEKELKNIA 240

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A + +GC+G  R D + D    K + LE+N  PGMT  S+ P  A   G SF EL+L 
Sbjct: 241 ETAWRTLGCKGCGRIDVILDNK-NKFWLLEVNTIPGMTYRSLVPISAKSIGISFDELVLK 299

Query: 292 MVE 294
           +++
Sbjct: 300 ILK 302


>gi|183599132|ref|ZP_02960625.1| hypothetical protein PROSTU_02586 [Providencia stuartii ATCC 25827]
 gi|188021357|gb|EDU59397.1| hypothetical protein PROSTU_02586 [Providencia stuartii ATCC 25827]
          Length = 367

 Score =  312 bits (800), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 88/346 (25%), Positives = 151/346 (43%), Gaps = 55/346 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------SVGLVLAHL---- 49
           + V+ GG S+E EVSL S K   + L+   F V  I +++            L H     
Sbjct: 6   VGVIFGGKSTEHEVSLQSAKNIINGLDRDRFDVCLIGINKQGHWHEYDEADFLIHANDPA 65

Query: 50  --------------------------------KPDLAFNVLHGNFGEDGLVQAILELLEI 77
                                           + D+ F ++HGN GEDG +Q +L +  +
Sbjct: 66  RIALSTPKRSIAIIPGKTTQQFISLEDAQPLPQIDVIFPIVHGNLGEDGSLQGLLRMANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ------HLISPPYVIK 131
           P+   G+L S+  MDK  +K+++   G+ V P I +                +  P  IK
Sbjct: 126 PFVGPGVLGSSACMDKDITKRLLRDAGLHVAPFITLTASDRTEANYEAVVKQLGLPLFIK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+GI  +  +      L    ++    ++LIE  V G E+ C V+G+     + 
Sbjct: 186 PANQGSSVGISKVTNESEFKAAL--DFAFLFDMKVLIESAVKGREIECAVLGNEQPLASP 243

Query: 192 IA--VPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               V    FY+Y  KY     ++ V PA + +++  +++ +A  A++A+ C G+SR D 
Sbjct: 244 CGEIVLHDSFYAYHTKYIDENGASVVAPADLDVEVSDKIREIALQAYRALNCSGMSRVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
                   V   EIN  PG T +S++P++    G +++ L+  ++E
Sbjct: 304 FLTE-DNHVIINEINTLPGFTNISMYPKLWQQGGMTYQALISRLIE 348


>gi|91200089|emb|CAJ73132.1| strongly similar to D-alanine:D-alanine ligase [Candidatus Kuenenia
           stuttgartiensis]
          Length = 334

 Score =  312 bits (800), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 123/320 (38%), Positives = 165/320 (51%), Gaps = 27/320 (8%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG+S ERE+SL SG A A AL+DAG  V  IDV       L H + D+AF  LHG
Sbjct: 6   IAVLMGGVSPEREISLRSGNAVAKALKDAGNNVICIDVKDEDIKELDHKEIDVAFIALHG 65

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR----- 115
            FGEDG VQ +LE+  IPYT SG+ AS ++MDK+ SK+     G+      L+ +     
Sbjct: 66  YFGEDGRVQQLLEVKGIPYTGSGVDASRIAMDKVESKRCFLDAGLKTPEYFLLKKPVNLA 125

Query: 116 FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175
                      P VIKP  GGSS+G+ +IK+  +    +    +   GD+  +E+YV G 
Sbjct: 126 DIEQEIQEFGLPVVIKPTNGGSSIGVSIIKEGNNFHYHV--GEALKCGDEAFVERYVSGR 183

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK----------------- 218
           E T G++   SL + EI V   DF+ Y  KY+S  + + +  K                 
Sbjct: 184 EFTIGILDSRSLPIIEICVAD-DFFDYNAKYNSGKTRYFVINKTFENKTNILNTPCCDVG 242

Query: 219 -IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
            +   +Y + Q LA  AH AIGCRG SR D L D      + LE+N  PG T  S+ P  
Sbjct: 243 FLDAALYDKAQELAIEAHNAIGCRGFSRVDILLDNK-NDFYILEVNTIPGFTEKSLLPMA 301

Query: 278 AAYAGYSFRELLLWMVEDAS 297
           A  A  SF  L   +V+ AS
Sbjct: 302 ARAADISFTSLCEKIVDLAS 321


>gi|15604119|ref|NP_220634.1| D-alanine--D-alanine ligase [Rickettsia prowazekii str. Madrid E]
 gi|6919859|sp|Q9ZDS6|DDL_RICPR RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|3860811|emb|CAA14711.1| D-ALANINE--D-ALANINE LIGASE (ddlB) [Rickettsia prowazekii]
 gi|292571845|gb|ADE29760.1| D-alanine--D-alanine ligase [Rickettsia prowazekii Rp22]
          Length = 321

 Score =  312 bits (800), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 115/297 (38%), Positives = 187/297 (62%), Gaps = 3/297 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +A++ GG+S+EREVSL S    + AL + G+KV+ +D+   + + L  + PD+ FN LHG
Sbjct: 25  IALVAGGMSAEREVSLVSSAGVSKALIELGYKVTFVDMGADIAVKLQEINPDIVFNCLHG 84

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG +  +L ++ IPYTHSG+L+SAL+ DK+  +  V    + +  SI+V++    +
Sbjct: 85  TYGEDGCLPGLLNIMRIPYTHSGLLSSALAFDKIHFRSCVLKNNINIADSIVVSKSDHIN 144

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  PYVIKPLK GSS+G+ VI ++            + +G+ ++IEQY+ G EL   
Sbjct: 145 TDPMKRPYVIKPLKQGSSIGVEVIFEEDDFNF---TDYDFPYGEDIIIEQYIQGQELQVA 201

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           ++   +L V EI + K+ FY YE KY+   + HV PA +P ++YK++   +   ++ I C
Sbjct: 202 LLNGKALGVLEIKLLKNRFYDYETKYNEGFAEHVCPAPLPANLYKKLLIESEKIYKTINC 261

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           +G  R++F+ +  + K++ LEIN  PGMTP+SI PE+AAYAG +F  L+  +++ AS
Sbjct: 262 KGPVRAEFILEEQTNKLYVLEINTHPGMTPLSIVPEIAAYAGINFTNLIEEIIKMAS 318


>gi|16077523|ref|NP_388337.1| D-alanyl-alanine synthetase A [Bacillus subtilis subsp. subtilis
           str. 168]
 gi|2829831|sp|P96612|DDL_BACSU RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|1881266|dbj|BAA19293.1| PROBABLE D-ALANINE--D-ALANINE LIGASE A [Bacillus subtilis]
 gi|2632756|emb|CAB12263.1| D-alanyl-D-alanine ligase A [Bacillus subtilis subsp. subtilis str.
           168]
          Length = 354

 Score =  312 bits (800), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 89/342 (26%), Positives = 148/342 (43%), Gaps = 53/342 (15%)

Query: 5   MGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL------------------ 46
            GG S+E  VSL +  A   AL    F +  I +      V                   
Sbjct: 2   YGGKSAEHNVSLQTALAVIKALNTEKFDIHPIYITEKGEWVRGARLTEPVSNVKMLQFEQ 61

Query: 47  ---------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
                                 +   D+ F +LHG  GEDG +Q +LELL IPY  +G+L
Sbjct: 62  GGSAFSPAALNQEMFPQEASQQNEAIDVVFPLLHGPNGEDGTIQGMLELLNIPYVGNGVL 121

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPLKGG 136
           AS+  MDK+  K + +  G+         +            + +  +  P  +KP   G
Sbjct: 122 ASSAGMDKVVMKHLFAQVGLAQAKYAAFLKKDWTRSPKESCEEVEQELGYPCFVKPANLG 181

Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--DVTEIAV 194
           SS+GI   +  + +        ++ +  ++++E+ ++G E+  GV+G+      V     
Sbjct: 182 SSVGISKCRNREELQKAF--ELAFQYDRKVVVEEGINGREIEIGVLGNDDPKCSVVGEIA 239

Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
           PK+DFY Y+ KY   ++  ++PA +  + Y  +  +A  A +AI   G+ R+DF      
Sbjct: 240 PKTDFYDYKAKYEDGDTDLMIPAIVTDEEYATISDMAIKAFKAIDGSGLVRADFFLTA-D 298

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            +V   E+N  PG TP S+FP +   AG  + +L+  +VE A
Sbjct: 299 GEVLINEVNTMPGFTPFSMFPLLWKEAGVEYADLIEQLVELA 340


>gi|228906016|ref|ZP_04069908.1| D-alanine--D-alanine ligase [Bacillus thuringiensis IBL 200]
 gi|228853619|gb|EEM98384.1| D-alanine--D-alanine ligase [Bacillus thuringiensis IBL 200]
          Length = 364

 Score =  312 bits (799), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 90/345 (26%), Positives = 156/345 (45%), Gaps = 52/345 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           + +L GG S+E +VSL +  A   AL    F++  I +      V               
Sbjct: 9   LGLLYGGKSAEHQVSLQTALAAIKALNQDKFEIHPIYITEQGQWVRGERIEGEVTDIEAL 68

Query: 47  ------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
                                        D+ F +LHG  GEDG VQ +LEL+ IPY  +
Sbjct: 69  KMSVAENAISPLSLSTEIIPSAASEENAIDVIFPLLHGPNGEDGTVQGLLELMNIPYVGN 128

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPL 133
           G+LAS+  MDK+  K + +  G+         R   +          +  +  P  +KP 
Sbjct: 129 GVLASSAGMDKVVMKNIFAEAGLKQAKYASFIRSAWEKDREEAYSKVEDKLGYPCFVKPA 188

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--DVTE 191
             GSS+GI   K  + +    +++  ++   ++++E+ + G E+  GV+G+      V  
Sbjct: 189 NLGSSVGINKCKNREELENAFVEAFQFDR--KIIVEENIVGREVEVGVLGNDEPKCSVVG 246

Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
             VPK DFY Y+ KY   ++  ++PA++  +    ++R A +A Q++   G++R+DF   
Sbjct: 247 EIVPKKDFYDYKSKYIDGDTALIIPAEMTGEESDVIKRDAIIAFQSLDGAGLTRADFFLT 306

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
               +V+  E+N  PG TP S+FP +  + G  + EL+  ++  A
Sbjct: 307 K-DGEVYINEVNTMPGFTPFSMFPLLWQHTGLPYPELIEELIRLA 350


>gi|78212393|ref|YP_381172.1| D-alanine--D-alanine ligase [Synechococcus sp. CC9605]
 gi|123578519|sp|Q3ALB5|DDL_SYNSC RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|78196852|gb|ABB34617.1| D-alanine--D-alanine ligase [Synechococcus sp. CC9605]
          Length = 350

 Score =  312 bits (799), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 96/343 (27%), Positives = 164/343 (47%), Gaps = 49/343 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALED----AGFKVSQIDVDRS--------------- 41
           + ++ GG S E +VS+ S       L        + V  I +DR                
Sbjct: 8   VGLVFGGRSGEHDVSIRSAATVVRGLRSGENTERYTVQPIYIDRDGRWWGTDLAEATLTS 67

Query: 42  -VGLVLAHLKP--------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
            V   L   +P              DL + VLHG  GEDG +Q + +L   P+  +G+L 
Sbjct: 68  EVAPELTTPRPPSGFQGFPEGCDAIDLWYPVLHGPNGEDGTIQGLFQLTGKPFVGAGVLG 127

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-----------QHLISPPYVIKPLKG 135
           SA+SMDK   K   SS G+   P + ++   ++            +  ++ P  +KP   
Sbjct: 128 SAVSMDKQAMKSAFSSAGLSQVPYVALHASELEDAKSRSALLDRIERELNYPCFVKPANL 187

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195
           GSS+GI  ++  Q +   L Q+++     +L++EQ V+  E+ C V+G  +L+ + I   
Sbjct: 188 GSSVGISKVRSRQELEAGLEQAAAL--DPRLVVEQGVNAREVECAVLGRRTLEASVIGEV 245

Query: 196 --KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
              +D+Y YE KY++  ST ++PA +P  +   ++  A  A  A+G  G+SR DF +D  
Sbjct: 246 RFDADWYDYETKYTAGRSTTLIPAPLPDPVRDRIREQALQACAAVGVHGMSRVDFFYDET 305

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           + +++  EIN  PG T  S+FP + A +G +  +L+  +++ A
Sbjct: 306 NDQLWINEINTLPGFTAQSMFPMLWAASGVTLEQLVHKLIQTA 348


>gi|313680822|ref|YP_004058561.1| d-alanine--d-alanine ligase [Oceanithermus profundus DSM 14977]
 gi|313153537|gb|ADR37388.1| D-alanine--D-alanine ligase [Oceanithermus profundus DSM 14977]
          Length = 323

 Score =  312 bits (799), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 93/323 (28%), Positives = 164/323 (50%), Gaps = 34/323 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           + ++ GG S E EVSL S +    AL    F      + +    +L  L           
Sbjct: 6   ILLVAGGRSGEHEVSLQSAQGVLEALP---FDADPAVIAKDGRWLLGRLALDAIEAGRAP 62

Query: 50  -------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRS 96
                          D+ F +LHG +GEDG +Q   E+L +PY  + + ASA+ MDK  S
Sbjct: 63  RGDHPFPPPVAWRDYDVVFPLLHGRWGEDGTIQGFFEMLGVPYVGADVTASAVCMDKDLS 122

Query: 97  KQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
           K++++  G+PV P  ++ +        + PP+ +KP + GSS+GI  +++   +   L +
Sbjct: 123 KRILAQAGLPVVPWEVLRKGEPVFVG-LEPPFFVKPARAGSSVGIAKVRRYAELRPALDE 181

Query: 157 SSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPK--SDFYSYELKYSSLNSTH 213
             ++ H D+++IEQ V G  EL   ++G+   + + +   +  ++FY Y  KY++  +  
Sbjct: 182 --AFRHDDKVVIEQAVPGVRELEVALLGNVEAEASVVGEVRYQAEFYDYATKYTAGAAEL 239

Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273
            +PA +     + VQ +A  A++ +G RG++R DF     S +++  E+N  PG TP S+
Sbjct: 240 DIPAALDPGTQETVQEMAVRAYRVLGVRGMARVDFFL-AESGEIYLNELNTIPGFTPFSM 298

Query: 274 FPEMAAYAGYSFRELLLWMVEDA 296
           +P++   +G  + ELL  +VE A
Sbjct: 299 YPKLWQASGLPYPELLTRLVELA 321


>gi|282909396|ref|ZP_06317211.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|283958862|ref|ZP_06376307.1| D-alanine--D-alanine ligase [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|282326666|gb|EFB56964.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|283789580|gb|EFC28403.1| D-alanine--D-alanine ligase [Staphylococcus aureus subsp. aureus
           A017934/97]
          Length = 356

 Score =  312 bits (799), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 85/339 (25%), Positives = 150/339 (44%), Gaps = 46/339 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           + ++ GG S+E EVS+ + +   +A+    + V  I +         +            
Sbjct: 6   ICIVFGGKSAEHEVSILTAQNVLNAIGKDKYHVDIIYITNDGDWRKQNNITTEIKSTDEL 65

Query: 49  --------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
                                  D  F +LHG  GEDG +Q + E+L++PY  +G+L++A
Sbjct: 66  HLENGEALEISQLLKESSSGQPYDAVFPLLHGPNGEDGTIQGLFEVLDVPYVGNGVLSAA 125

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSL 139
            SMDK+  KQ+    G+P  P I   R   +             ++ P  +KP   GSS+
Sbjct: 126 SSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYEHNILKLVNDKLNYPVFVKPANLGSSI 185

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKS 197
           GI     +  +   + ++  ++   +L+IEQ V+  E+   V+G+   + T     V   
Sbjct: 186 GISKCSNEVELKEGIKEAFQFDR--KLVIEQGVNAREIEVAVLGNDYPEATWPGEVVKDV 243

Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
            FY Y+ KY        +PA +  D+   ++ +A  A +A  C G+ R+DF       ++
Sbjct: 244 AFYDYKSKYKDGKVQLQIPADLDEDVQLTLRNMALEAFKATDCSGLVRADFFVTE-DNQI 302

Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +  E N  PG T  S++P++    G S+ EL+  ++E A
Sbjct: 303 YINETNAMPGFTAFSMYPKLWENMGLSYPELITKLIELA 341


>gi|168216305|ref|ZP_02641930.1| D-alanine--D-alanine ligase [Clostridium perfringens NCTC 8239]
 gi|182381721|gb|EDT79200.1| D-alanine--D-alanine ligase [Clostridium perfringens NCTC 8239]
          Length = 302

 Score =  312 bits (799), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 95/299 (31%), Positives = 164/299 (54%), Gaps = 8/299 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + ++MGGISSEREVSL+SG++  + ++   ++VS+I ++    ++      D A   LHG
Sbjct: 3   VGIIMGGISSEREVSLASGESIFNHIDKEKYEVSKIIINNKRDILEKVTGLDFALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFT 117
            FGEDG VQA L++++IPY+  G L+S+L MDK  SK+V+ +  +     I V       
Sbjct: 63  KFGEDGTVQAFLDIIDIPYSGCGALSSSLCMDKNLSKKVLKAENIRTAKWITVKSIEEID 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            +    I  P  +KP  GGSS+    + K + I   +++     + ++++IE +V G E+
Sbjct: 123 YEKIEEIGYPVFVKPNNGGSSVATFKVYKKEDIKDAVMEGL--KYDEEVIIESFVKGREI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC +       + EI   K+DFY Y+ KY++  + H+ P ++   +Y EV+ +A    + 
Sbjct: 181 TCPIFNGELFPILEIK-SKADFYDYKQKYAANGAEHL-PVQLEKSLYDEVKEMALKTFEV 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           + C   +R D +        + LE+N  PGMT  S+FP+ A   G S+ + +  ++E +
Sbjct: 239 LKCEVYARVDMIISE-EGVPYILEVNTLPGMTATSLFPQSAESIGISYSKFIDLIIETS 296


>gi|238787931|ref|ZP_04631727.1| D-alanine--D-alanine ligase [Yersinia frederiksenii ATCC 33641]
 gi|238723879|gb|EEQ15523.1| D-alanine--D-alanine ligase [Yersinia frederiksenii ATCC 33641]
          Length = 359

 Score =  312 bits (799), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 91/345 (26%), Positives = 156/345 (45%), Gaps = 55/345 (15%)

Query: 4   LMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP---- 51
           + GG S+E EVSL S K    A++   F V+ + +D+            +L    P    
Sbjct: 2   VFGGKSAEHEVSLQSAKNIVDAIDKEKFDVTLLGIDKQGQWHVNDASSYLLNAENPALIS 61

Query: 52  -------------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYT 80
                                          D+ F ++HG  GEDG +Q +L +  IP+ 
Sbjct: 62  LNHSNRNVALIPGQASQQLITTDNASALAQLDVIFPIVHGTLGEDGSLQGLLRMANIPFV 121

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLISPPYVIKPLK 134
            SG++ SA+SMDK  +K+++   G+ + P I + R              +  P  IKP  
Sbjct: 122 GSGVVGSAVSMDKDITKRLLRDAGLNIAPFITLTRANQGHYSFEQVTAKLGLPLFIKPAN 181

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI-- 192
            GSS+G+  ++ +      +  +  ++H  ++L+E  + G E+ C VMG+     +    
Sbjct: 182 QGSSVGVSKVRNEAEYQRAVALAFDFDH--KVLVESAIVGREIECAVMGNDHPQASLCGE 239

Query: 193 AVPKSDFYSYELKYSSL-NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
            V   +FYSY+ KY +   +  ++PA I  D+   ++ +A  A QA+ C G++R D    
Sbjct: 240 VVISDEFYSYDTKYINETGAQVIIPAAIDTDVSDRIRAVALAAFQALECCGMARVDVFLT 299

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           P    +   EIN  PG T +S++P++    G    EL+  ++E A
Sbjct: 300 P-DNCIVINEINTLPGFTNISMYPKLWRATGVGSTELITRLIELA 343


>gi|299538289|ref|ZP_07051574.1| D-alanine--D-alanine ligase B [Lysinibacillus fusiformis ZC1]
 gi|298726491|gb|EFI67081.1| D-alanine--D-alanine ligase B [Lysinibacillus fusiformis ZC1]
          Length = 359

 Score =  312 bits (799), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 92/343 (26%), Positives = 158/343 (46%), Gaps = 50/343 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           + +L GG S+E EVSLS+ +A   AL    ++V  I +                      
Sbjct: 5   IGLLYGGKSAEHEVSLSTARAVTGALNFEEYEVYPIFITSDGEWRRGERLEKPVSAIEEL 64

Query: 50  -------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84
                                    K D+ F +LHG  GEDG VQ +LE+L +PY  +G+
Sbjct: 65  QFGDNTTILENNITDFLIDKSGNEVKFDVIFPLLHGTNGEDGTVQGLLEVLNLPYVGNGV 124

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---------ISPPYVIKPLKG 135
           LAS+  MDK+  KQ+    G+P  P     R    ++           ++ P  +KP   
Sbjct: 125 LASSAGMDKVVMKQLFEIAGLPQVPYTYFIRSEWKNEQQAIIERCENNLNWPMFVKPANL 184

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV- 194
           GSS+GI      + +   +    +  +  ++++EQ +   E+   V+G+   +V+     
Sbjct: 185 GSSVGISKATDREQLVKAI--EVALQYDRKIVVEQGIVAREVELAVLGNDYPEVSVPGEI 242

Query: 195 -PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
            P +DFY Y+ KY   ++  ++PA++P++    ++ LA  A +AI   G+ R+DF     
Sbjct: 243 KPVTDFYDYDSKYKDGSTALIIPAELPVETVASLKELAKRAFKAIDGSGLVRADFFVTAE 302

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +  V+  E+N  PG TPVS++P +  +   S+ EL+  ++  A
Sbjct: 303 NN-VYINEVNTMPGFTPVSMYPLLWQHTNVSYPELIDRLITLA 344


>gi|253577485|ref|ZP_04854799.1| D-alanine-D-alanine ligase [Paenibacillus sp. oral taxon 786 str.
           D14]
 gi|251843104|gb|EES71138.1| D-alanine-D-alanine ligase [Paenibacillus sp. oral taxon 786 str.
           D14]
          Length = 366

 Score =  312 bits (799), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 83/343 (24%), Positives = 153/343 (44%), Gaps = 49/343 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           + ++ GG S E EVSL +  A + A     +++    +D+     +              
Sbjct: 10  VGLIYGGKSGEHEVSLQTAFAVSKAFNFDKYELLPFYIDKQGKWKVGEKLHAPFAALEEL 69

Query: 50  -------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84
                                    + D+ F +LHG  GEDG +Q + E+ ++PY  +G+
Sbjct: 70  KLEESKGDTAAAMGLLFSKLSTGQSEIDVVFPLLHGTNGEDGTIQGLFEMADLPYVGAGV 129

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKG 135
           LASA  MDK+  K++ +  G+  C          +          +  +  P  +KP   
Sbjct: 130 LASAAGMDKVIMKKLFAEAGLEQCAYCYFTASEWERSSHTLIQSIEEKLGYPCFVKPANL 189

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--DVTEIA 193
           GSS+GI   +  + +   +    ++ +  ++++E++VD  E+  GV+G+      V    
Sbjct: 190 GSSVGISKARNREELLSSVAL--AFRYDLKVIVEEFVDAREVEVGVLGNDEPLASVPGEI 247

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
           V   ++Y Y+ KY    S  ++PA I  ++ + ++ LA  A +AI   G+ R+DF     
Sbjct: 248 VSSGEYYDYQAKYLDGKSQMLIPAPIDTELAERIRELAVKAFKAIAGSGLCRADFFVRKS 307

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             K++  E+N  PG TP S++P +    G ++  LL  ++E A
Sbjct: 308 DHKIWINEVNTMPGFTPFSMYPLLWRETGVAYEVLLDRLIELA 350


>gi|2833428|sp|Q47827|DDL_ENTHR RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|1244574|gb|AAB17904.1| D-alanine:D-alanine ligase [Enterococcus hirae]
          Length = 358

 Score =  312 bits (799), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 87/342 (25%), Positives = 156/342 (45%), Gaps = 51/342 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLA------------- 47
           + +L GG S+E +VS+ S  +  +A+    ++V  I + +    V               
Sbjct: 3   ITLLYGGRSAEHDVSVLSAFSVLNAIYYTYYQVQLIFISKEGQWVKGPLLTEKPTSKEDL 62

Query: 48  HLKPD------------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
           HL  D                        + F VLHG  GEDG +Q  LE L +PY  +G
Sbjct: 63  HLTWDPSGKVTDGFTGRVINPGEIKEEGTIVFPVLHGPNGEDGTIQGFLETLNLPYVGAG 122

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLK 134
           +L SA +MDK+ +K ++ + GVP  P + V +              +  +  P  +KP  
Sbjct: 123 VLTSACAMDKIMTKYILQAAGVPQVPYVPVLKNQWKENPKKIFDQCEGSLLYPMFVKPAN 182

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI-- 192
            GSS+GI   +  + +   L    ++ +  + ++EQ ++  E+   V+G+  +  T    
Sbjct: 183 MGSSVGISKAENREELQNALAL--AYQYDSRAIVEQGIEAREIEVAVLGNEDVRTTLPGE 240

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            V    FY Y+ KY +      +PA++P ++Y++ Q  A +A+  +G  G+SR DF    
Sbjct: 241 VVKDVAFYDYDAKYINNKIEMQIPAEVPEEVYQKAQEYAKIAYTMLGGSGLSRCDFFLTN 300

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
              ++F  E+N  PG T  S++P +    G  + +L+  +++
Sbjct: 301 K-NELFLNELNTMPGFTQFSMYPLLWENMGLKYGDLIEELIQ 341


>gi|301051968|ref|YP_003790179.1| D-alanylalanine synthetase [Bacillus anthracis CI]
 gi|300374137|gb|ADK03041.1| D-alanylalanine synthetase [Bacillus cereus biovar anthracis str.
           CI]
          Length = 361

 Score =  312 bits (799), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 90/345 (26%), Positives = 155/345 (44%), Gaps = 52/345 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           + +L GG S+E +VSL +  A   AL    F++  I +      +               
Sbjct: 6   LGLLYGGKSAEHQVSLQTALAAIKALNQDKFEIHPIYITEQGQWIRGERIEGEVANVEVL 65

Query: 46  -----------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
                                        D+ F +LHG  GEDG VQ +LEL+ IPY  +
Sbjct: 66  KMSGAENAISPLSLSTEIIPSANAEENAIDVIFPLLHGPNGEDGTVQGLLELMNIPYVGN 125

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPL 133
           G+LASA  MDK+  K + +  G+         R   +          + ++  P  +KP 
Sbjct: 126 GVLASAAGMDKVVMKNIFAEAGLKQAKYASFIRSGWEKDRETAYEKVEEVLGYPCFVKPA 185

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--DVTE 191
             GSS+GI   K  + +     ++  ++   ++++E+ + G E+  GV+G+      V  
Sbjct: 186 NLGSSVGINKCKNREELENAFEEAFQFDR--KIIVEENIIGREVEVGVLGNDEPKCSVVG 243

Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
             VPK DFY Y+ KY   ++  ++PA+   +    ++R A +A Q++   G++R+DF   
Sbjct: 244 EIVPKKDFYDYKSKYIDGDTALIIPAERTEEESNVIKRDAIVAFQSLDGAGLTRADFFLT 303

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
               +V+  E+N  PG TP S+FP +  + G  + EL+  ++  A
Sbjct: 304 K-DGEVYINEVNTMPGFTPFSMFPLLWQHTGLPYPELIEELIRLA 347


>gi|229015636|ref|ZP_04172626.1| D-alanine--D-alanine ligase [Bacillus cereus AH1273]
 gi|229021828|ref|ZP_04178404.1| D-alanine--D-alanine ligase [Bacillus cereus AH1272]
 gi|228739468|gb|EEL89888.1| D-alanine--D-alanine ligase [Bacillus cereus AH1272]
 gi|228745656|gb|EEL95668.1| D-alanine--D-alanine ligase [Bacillus cereus AH1273]
          Length = 361

 Score =  311 bits (798), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 89/345 (25%), Positives = 155/345 (44%), Gaps = 52/345 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           + +L GG S+E +VSL +  A   AL    F++  I +      V               
Sbjct: 6   LGLLYGGKSAEHQVSLQTALAAIKALNQDKFEIHPIYITEQGQWVRGERIEGEVTDVEAL 65

Query: 47  ------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
                                        D+ F +LHG  GEDG VQ +LEL+ IPY  +
Sbjct: 66  KMSGAENAISPLSLSTEIIPAETSEENAIDVIFPLLHGPNGEDGTVQGLLELMNIPYVGN 125

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPL 133
           G+LAS+  MDK+  K + +  G+         R   +          +  +  P  +KP 
Sbjct: 126 GVLASSAGMDKVVMKNIFAEAGLKQAKYASFIRSAWEKNREEAYDKVEEKLGYPCFVKPA 185

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--DVTE 191
             GSS+GI   K  + +     ++  ++   ++++E+ + G E+  GV+G+      V  
Sbjct: 186 NLGSSVGINKCKDREELENAFEEAFQFDR--KIIVEENIVGREVEVGVLGNDEPKCSVVG 243

Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
             VPK DFY Y+ KY   ++  ++PA++  +    ++R A +A Q++   G++R+DF   
Sbjct: 244 EIVPKKDFYDYKSKYIDGDTALIIPAEMTEEESDVIKRDAIVAFQSLDGAGLTRADFFLT 303

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
               +V+  E+N  PG TP S+FP +  + G  + +L+  ++  A
Sbjct: 304 K-DGEVYINEVNTMPGFTPFSMFPLLWQHTGLPYPKLIEELINLA 347


>gi|310829666|ref|YP_003962023.1| hypothetical protein ELI_4118 [Eubacterium limosum KIST612]
 gi|308741400|gb|ADO39060.1| hypothetical protein ELI_4118 [Eubacterium limosum KIST612]
          Length = 510

 Score =  311 bits (798), Expect = 7e-83,   Method: Composition-based stats.
 Identities = 91/342 (26%), Positives = 155/342 (45%), Gaps = 44/342 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           + ++ GG S E EVS +S       ++   + ++ I + ++    +              
Sbjct: 168 LGIVFGGQSGEHEVSRASACNVIEVIDKEKYDITLIGITKNGDWKVYTGDYKNIKDGSWE 227

Query: 47  ----------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
                                D+ F VLHG  GEDG +Q + EL+  PY   G+LASA  
Sbjct: 228 QDTDKIHADFSIFHDPIIQDVDVFFPVLHGPMGEDGTIQGLFELMNKPYVGCGVLASAAG 287

Query: 91  MDKMRSKQVVSSCGVPVCPSILVNRFTM--------DSQHLISPPYVIKPLKGGSSLGII 142
           MDK+ SK +  S G+PV P +   R           D       P  IKP   GSS+GI 
Sbjct: 288 MDKVASKMLFESAGIPVGPYVYFKRRDWEKDPDRIIDDIAGRGFPVFIKPSNMGSSVGIS 347

Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM---GDASLDVTEIAVPKSDF 199
                +     + ++  ++H  ++++E +++  E+ C V+   G+    +    V   +F
Sbjct: 348 KAHNREEFIDGVNEALRYDH--KIVVEGFLNAREIECAVLEENGEIKAAIPGEVVASKEF 405

Query: 200 YSYELKYSSL-NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
           Y YE KYS   +S  V+PA+I   + ++++  A  A + I    +SR DF     +  ++
Sbjct: 406 YDYEAKYSDNQDSKIVIPAQISDALLEKIREYAIKAFEVIDGSSLSRVDFFVTRATYNIY 465

Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
             EIN  PG T +S++P+M    G S+ EL+  +++ A+  R
Sbjct: 466 INEINTMPGFTNISMYPKMWENMGVSYAELVEKLIQGAAVKR 507


>gi|83720293|ref|YP_441668.1| D-alanine--D-alanine ligase [Burkholderia thailandensis E264]
 gi|167580475|ref|ZP_02373349.1| D-alanine--D-alanine ligase B [Burkholderia thailandensis TXDOH]
 gi|167618583|ref|ZP_02387214.1| D-alanine--D-alanine ligase B [Burkholderia thailandensis Bt4]
 gi|257137837|ref|ZP_05586099.1| D-alanine--D-alanine ligase [Burkholderia thailandensis E264]
 gi|123537601|sp|Q2SZI1|DDL_BURTA RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|83654118|gb|ABC38181.1| D-alanine--D-alanine ligase B [Burkholderia thailandensis E264]
          Length = 312

 Score =  311 bits (798), Expect = 7e-83,   Method: Composition-based stats.
 Identities = 98/300 (32%), Positives = 153/300 (51%), Gaps = 11/300 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+ER+VSL+SG+     L DAG      D  +     L       AFN LHG
Sbjct: 12  VAVLLGGESAERDVSLNSGRLVLQGLRDAGIDAHPFDPAQRPLAALKDEGFVRAFNALHG 71

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118
            +GE+G +Q  L+   I YT SG+L SAL +DK R+K V    G+P  P   V R     
Sbjct: 72  GYGENGQIQGALDFYGIRYTGSGVLGSALGLDKFRTKLVWQQTGIPTPPFETVMRGDDYA 131

Query: 119 ----DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD- 173
               D    +  P  +KP   GSS+ +  +K   ++P       +  H   +++E+ ++ 
Sbjct: 132 ARAKDIVAKLGMPLFVKPASEGSSVAVEKVKSADALPA--ALEEAAKHDKIVIVEKSIEG 189

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           G E T  +  D  L + +I VP  +FY Y  KY + ++ +++P  +      E +R+A  
Sbjct: 190 GGEYTACIAADLDLPLIKI-VPAGEFYDYHAKYIANDTQYLIPCGLDAAKEAEFKRIARR 248

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           A   +GC    R+DF+ D      ++LE+N  PGMT  S+ P+ A   G S+ EL++ ++
Sbjct: 249 AFDVLGCTDWGRADFMLDAAGN-PYFLEVNTAPGMTDHSLPPKAARAVGISYSELVVKVL 307


>gi|238755653|ref|ZP_04616989.1| D-alanine--D-alanine ligase [Yersinia ruckeri ATCC 29473]
 gi|238706166|gb|EEP98547.1| D-alanine--D-alanine ligase [Yersinia ruckeri ATCC 29473]
          Length = 363

 Score =  311 bits (798), Expect = 7e-83,   Method: Composition-based stats.
 Identities = 90/347 (25%), Positives = 159/347 (45%), Gaps = 55/347 (15%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP-- 51
            V+ GG S+E EVSL S K    A++   F+V+ + +D+            +L    P  
Sbjct: 2   GVIFGGKSAEHEVSLQSAKNIVDAIDTEKFEVTLLGIDKQGQWHVNDASSYLLHAENPAL 61

Query: 52  ---------------------------------DLAFNVLHGNFGEDGLVQAILELLEIP 78
                                            D+ F ++HG  GEDG +Q +L +  +P
Sbjct: 62  IALNHSNKNVALVPGQQQRQLIDANNASALSQLDVVFPIVHGTLGEDGSLQGLLRMANMP 121

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVIKP 132
           +  SG++ SA SMDK  +K+++   G+ + P I + R   +       +  +  P  IKP
Sbjct: 122 FVGSGVVGSAASMDKDVTKRLLRDAGLNIAPFITLTRANREQYGFEPVREKLGLPLFIKP 181

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192
              GSS+G+  +   +     +  + S++H  ++L+E  + G E+ C V+G+     +  
Sbjct: 182 ANQGSSVGVSKVCSAEEFTAAVELAFSFDH--KVLVESAIVGREIECAVLGNDQPKASLC 239

Query: 193 --AVPKSDFYSYELKYSSLN-STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
              V   +FYSY+ KY S + +  V+PA +   +   ++ +A  A + + C G++R D  
Sbjct: 240 GEVVISDEFYSYDTKYISDSGAQVVIPAVLDAQVSDRIRAVAVEAFRTLECLGMARVDVF 299

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             P   K+   EIN  PG T +S++P++    G    EL+  ++E A
Sbjct: 300 LTP-DNKIIINEINTLPGFTNISMYPKLWRATGIDSTELITTLIELA 345


>gi|53720633|ref|YP_109619.1| D-alanine--D-alanine ligase [Burkholderia pseudomallei K96243]
 gi|53726038|ref|YP_104092.1| D-alanine--D-alanine ligase [Burkholderia mallei ATCC 23344]
 gi|67643627|ref|ZP_00442372.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB)
           (D-Ala-D-Ala ligase B) [Burkholderia mallei GB8 horse 4]
 gi|76810239|ref|YP_334912.1| D-alanine--D-alanine ligase [Burkholderia pseudomallei 1710b]
 gi|121598695|ref|YP_991819.1| D-alanine--D-alanine ligase [Burkholderia mallei SAVP1]
 gi|124384751|ref|YP_001027312.1| D-alanine--D-alanine ligase [Burkholderia mallei NCTC 10229]
 gi|126449009|ref|YP_001082751.1| D-alanine--D-alanine ligase [Burkholderia mallei NCTC 10247]
 gi|126453261|ref|YP_001067784.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei 1106a]
 gi|134280198|ref|ZP_01766909.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei 305]
 gi|166998635|ref|ZP_02264493.1| D-alanine--D-alanine ligase B [Burkholderia mallei PRL-20]
 gi|167721338|ref|ZP_02404574.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei DM98]
 gi|167740308|ref|ZP_02413082.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei 14]
 gi|167817527|ref|ZP_02449207.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei 91]
 gi|167825927|ref|ZP_02457398.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei 9]
 gi|167847413|ref|ZP_02472921.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei B7210]
 gi|167896001|ref|ZP_02483403.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei 7894]
 gi|167912648|ref|ZP_02499739.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei 112]
 gi|167920615|ref|ZP_02507706.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei BCC215]
 gi|217425698|ref|ZP_03457188.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei 576]
 gi|226199604|ref|ZP_03795160.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei Pakistan
           9]
 gi|242317528|ref|ZP_04816544.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei 1106b]
 gi|254178899|ref|ZP_04885553.1| D-alanine--D-alanine ligase B [Burkholderia mallei ATCC 10399]
 gi|254191010|ref|ZP_04897516.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei Pasteur
           52237]
 gi|254199055|ref|ZP_04905470.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei S13]
 gi|254202813|ref|ZP_04909176.1| D-alanine--D-alanine ligase B [Burkholderia mallei FMH]
 gi|254208155|ref|ZP_04914505.1| D-alanine--D-alanine ligase B [Burkholderia mallei JHU]
 gi|254260710|ref|ZP_04951764.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei 1710a]
 gi|254299364|ref|ZP_04966814.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei 406e]
 gi|254357641|ref|ZP_04973915.1| D-alanine--D-alanine ligase B [Burkholderia mallei 2002721280]
 gi|81379043|sp|Q63QJ9|DDL_BURPS RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|81604222|sp|Q62GS9|DDL_BURMA RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|123597910|sp|Q3JNE1|DDL_BURP1 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|190359119|sp|A3MR65|DDL_BURM7 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|190359120|sp|A2S5U3|DDL_BURM9 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|190359121|sp|A1V0R6|DDL_BURMS RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|190359122|sp|A3NZL3|DDL_BURP0 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|52211047|emb|CAH37035.1| D-alanine--d-alanine ligase B [Burkholderia pseudomallei K96243]
 gi|52429461|gb|AAU50054.1| D-alanine--D-alanine ligase B [Burkholderia mallei ATCC 23344]
 gi|76579692|gb|ABA49167.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei 1710b]
 gi|121227505|gb|ABM50023.1| D-alanine--D-alanine ligase B [Burkholderia mallei SAVP1]
 gi|124292771|gb|ABN02040.1| D-alanine--D-alanine ligase B [Burkholderia mallei NCTC 10229]
 gi|126226903|gb|ABN90443.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei 1106a]
 gi|126241879|gb|ABO04972.1| D-alanine--D-alanine ligase B [Burkholderia mallei NCTC 10247]
 gi|134248205|gb|EBA48288.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei 305]
 gi|147747060|gb|EDK54137.1| D-alanine--D-alanine ligase B [Burkholderia mallei FMH]
 gi|147752049|gb|EDK59116.1| D-alanine--D-alanine ligase B [Burkholderia mallei JHU]
 gi|148026705|gb|EDK84790.1| D-alanine--D-alanine ligase B [Burkholderia mallei 2002721280]
 gi|157809278|gb|EDO86448.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei 406e]
 gi|157938684|gb|EDO94354.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei Pasteur
           52237]
 gi|160694813|gb|EDP84821.1| D-alanine--D-alanine ligase B [Burkholderia mallei ATCC 10399]
 gi|169656885|gb|EDS88282.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei S13]
 gi|217391286|gb|EEC31318.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei 576]
 gi|225928350|gb|EEH24381.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei Pakistan
           9]
 gi|238525006|gb|EEP88436.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB)
           (D-Ala-D-Ala ligase B) [Burkholderia mallei GB8 horse 4]
 gi|242140767|gb|EES27169.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei 1106b]
 gi|243065314|gb|EES47500.1| D-alanine--D-alanine ligase B [Burkholderia mallei PRL-20]
 gi|254219399|gb|EET08783.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei 1710a]
          Length = 312

 Score =  311 bits (798), Expect = 7e-83,   Method: Composition-based stats.
 Identities = 98/300 (32%), Positives = 151/300 (50%), Gaps = 11/300 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SG+     L DAG      D  +     L       AFN LHG
Sbjct: 12  VAVLLGGDSAEREVSLNSGRLVLQGLRDAGIDAHPFDPAQRPLAALKDEGFVRAFNALHG 71

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117
            +GE+G +Q  L+   I YT SG+L SAL +DK R+K V    G+P  P   V R     
Sbjct: 72  GYGENGQIQGALDFYGIRYTGSGVLGSALGLDKFRTKLVWQQTGIPTPPFETVMRGDDYA 131

Query: 118 ---MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD- 173
               D    +  P  +KP   GSS+ +  +K   ++P       +  H   +++E+ ++ 
Sbjct: 132 ARAQDIVAKLGVPLFVKPASEGSSVAVEKVKSADALPA--ALEEAAKHDKIVIVEKSIEG 189

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           G E T  +  D  L +  I VP  +FY Y  KY + ++ +++P  +      E +R+A  
Sbjct: 190 GGEYTACIAADLDLPLIRI-VPAGEFYDYHAKYIANDTQYLIPCGLDAAKEAEFKRIARR 248

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           A   +GC    R+DF+ D      ++LE+N  PGMT  S+ P+ A   G  + EL++ ++
Sbjct: 249 AFDVLGCTDWGRADFMLDAAGN-PYFLEVNTAPGMTDHSLPPKAARAVGIGYSELVVKVL 307


>gi|293189634|ref|ZP_06608351.1| D-alanine--D-alanine ligase [Actinomyces odontolyticus F0309]
 gi|292821372|gb|EFF80314.1| D-alanine--D-alanine ligase [Actinomyces odontolyticus F0309]
          Length = 378

 Score =  311 bits (798), Expect = 7e-83,   Method: Composition-based stats.
 Identities = 95/362 (26%), Positives = 164/362 (45%), Gaps = 70/362 (19%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQI-------------------------- 36
           ++ GG SSE E+S S+     +A++   + V  +                          
Sbjct: 11  IVFGGRSSEHEISCSTAAGILTAIDRTKWDVIPLGITRDGQWVRVADDPSALEFKDGKGQ 70

Query: 37  -------------------------DVDRSVGLVL---AHLKPDLAFNVLHGNFGEDGLV 68
                                    D D S   V+        D+ F +LHG +GEDG +
Sbjct: 71  CVTAGSTRVALTPGEGNLVELSYDGDPDASDSRVVGVEDLGHVDIVFPLLHGPYGEDGTI 130

Query: 69  QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ------- 121
           Q + E+  + Y   G+ +SA+SMDK  +K V+++ G+ V    LV     D+        
Sbjct: 131 QGLFEMAGVRYVGCGVTSSAVSMDKHLTKTVLAAAGIDVGRWELVTARQWDTDATACMDR 190

Query: 122 -HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P  +KP + GSS+GI  +   + +P+ + +++  NH  ++++E    G E+ CG
Sbjct: 191 IEGLGFPVFVKPCRAGSSVGISRVTCREDLPVAIKEAA--NHDPRIIVEASTSGREVECG 248

Query: 181 VMGD------ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
           V+G        +  + EI +P+ +FY YE KY         PA +  +    ++  A+ A
Sbjct: 249 VLGSRSDWRSGTAPLGEIVIPEGEFYDYEHKYVDDIVGLSCPADVAPEYADRIRATAWRA 308

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             A+ C G++R DF FD  +  V   E+N  PG TP+S++P+M A +G S+ +LL  ++ 
Sbjct: 309 FDALECEGLARVDFFFDEATDSVIINEVNTMPGFTPISMYPQMWAASGLSYSDLLNELLT 368

Query: 295 DA 296
           +A
Sbjct: 369 EA 370


>gi|325920616|ref|ZP_08182529.1| D-alanine--D-alanine ligase [Xanthomonas gardneri ATCC 19865]
 gi|325548907|gb|EGD19848.1| D-alanine--D-alanine ligase [Xanthomonas gardneri ATCC 19865]
          Length = 380

 Score =  311 bits (798), Expect = 7e-83,   Method: Composition-based stats.
 Identities = 92/348 (26%), Positives = 162/348 (46%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           + ++ GG S+E EVSL S +    AL+   F+   I +D+     +              
Sbjct: 19  VGLIFGGKSAEHEVSLQSARNILDALDPQRFEPVLIGIDKQGQWHVNDPDSFLLNADDPA 78

Query: 47  -----------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEI 77
                                        A  + D+ F ++HG  GEDG +Q +L +  +
Sbjct: 79  RIALHRSGRGVALLPGAHQQQLRPTQPEQALAQIDVVFPIVHGTLGEDGSLQGLLRMANL 138

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIK 131
            +  SG+L SA++MDK  +K+V+   G+ V P +  NR T     +         P  +K
Sbjct: 139 AFVGSGVLGSAVAMDKDMAKRVLRDAGLEVAPFVCFNRHTAAHADVHALVAQFGLPLFVK 198

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  ++  +     L  + +++H  ++L+E  V G E+ C V+G+A+   + 
Sbjct: 199 PANQGSSVGVSQVRTAEQFAAALALALAYDH--KVLVEAAVTGREIECAVLGNATPQASV 256

Query: 192 I--AVPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               V    FYSY+ KY S   +  V+PA I     + +Q++A  A+QA+ C G++R D 
Sbjct: 257 CGEVVVHDAFYSYQTKYISEHGAEIVIPANIDAQTQQRIQQIAVQAYQALDCAGMARVDV 316

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                  ++   E+N  PG T +S++P++   +G  +R L+  ++E A
Sbjct: 317 FL-CADGRIVINEVNTLPGFTRISMYPKLWQASGLDYRSLITQLIELA 363


>gi|186686633|ref|YP_001869829.1| D-alanyl-alanine synthetase A [Nostoc punctiforme PCC 73102]
 gi|229485969|sp|B2J0J6|DDL_NOSP7 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|186469085|gb|ACC84886.1| D-alanine--D-alanine ligase [Nostoc punctiforme PCC 73102]
          Length = 366

 Score =  311 bits (798), Expect = 8e-83,   Method: Composition-based stats.
 Identities = 93/356 (26%), Positives = 163/356 (45%), Gaps = 62/356 (17%)

Query: 1   MAVLMGGISSEREVSLSSGKACASAL----EDAGFKVSQIDVDRSVGLVLAHL------- 49
           + +L GG S E EVS+ S +A A AL      + +++    + +    +           
Sbjct: 6   VGLLFGGRSGEHEVSIKSARAIAKALSVDENASKYEILPFYIQKDGRWLAGEAPQKVLET 65

Query: 50  -----------------------------------KPDLAFNVLHGNFGEDGLVQAILEL 74
                                              + D+ F VLHG  GEDG +Q +L L
Sbjct: 66  GSPLLEAEQSTSEGNLTSNPQVQTLSKWESPSQVAQVDIWFPVLHGPNGEDGTIQGLLTL 125

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM------------DSQH 122
           +++P+  SG+L SA+ MDK+  K      G+       + R  +            + + 
Sbjct: 126 MQVPFVGSGVLGSAMGMDKIAMKMTFEQAGLAQVKYKAITRAQVWSNPCVFPKLCDEIEA 185

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            +  P  +KP   GSS+GI  ++  Q +   L  ++S++   +L++E  V   E+ C V+
Sbjct: 186 ALGYPAFVKPANLGSSVGIAKVRSRQELEAALDNAASYDR--RLVVEAGVVAREVECAVL 243

Query: 183 GDASLDVTEIAVP--KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           G+     + +      SDFY YE KY+   +  ++PA IP  I +++Q +A  A  A+  
Sbjct: 244 GNDQPQASVVGEISYDSDFYDYETKYTEDRADLLIPAPIPDAIARQIQDMALQAFAAVDA 303

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            G++R DF +   +++V   EIN  PG T  S++P++ A++G SF EL+  +++ A
Sbjct: 304 AGLARVDFFYVEATQEVLINEINTLPGFTATSMYPQLWAHSGVSFPELVDRLIQLA 359


>gi|302873595|ref|YP_003842228.1| D-alanine/D-alanine ligase [Clostridium cellulovorans 743B]
 gi|307688224|ref|ZP_07630670.1| D-alanine--D-alanine ligase [Clostridium cellulovorans 743B]
 gi|302576452|gb|ADL50464.1| D-alanine/D-alanine ligase [Clostridium cellulovorans 743B]
          Length = 300

 Score =  311 bits (798), Expect = 8e-83,   Method: Composition-based stats.
 Identities = 90/299 (30%), Positives = 160/299 (53%), Gaps = 9/299 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + +LMGGISSERE+SL SG+A  +A++ + ++   I +D    ++      D AF  LHG
Sbjct: 3   VGILMGGISSEREISLKSGEAVFNAIDKSKYEPVAIVIDSKEDIINKVKGIDFAFLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG VQ++L+ L IPY+  G + SA+ MDK  +K+V+ S G+       V       
Sbjct: 63  QFGEDGTVQSVLQTLNIPYSGCGPMTSAICMDKDMTKKVLKSQGINTARWTTVRAIQDID 122

Query: 121 QHLI---SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
             L+     P+ +KP  GGSS+    + K + +   ++++    +  +++IE+YV G E+
Sbjct: 123 YALLDSIGYPFFVKPNSGGSSVATNRVDKKEQVEAAVVEAL--KYDTEVMIEEYVKGDEI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC ++   +  +  I  P  +F+ +  KY    +  ++  ++  ++ K V+ +A     A
Sbjct: 181 TCSIINRKTYPIVAIK-PTGEFFDFTSKYQDNGAEEIV-VQLEENLSKTVEAMAIACWDA 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +      R D +    +   + LE+N  PGMT  S+ P+  A AG S+ +L+  ++E++
Sbjct: 239 LKFSAYVRVDMII--KNNVPYVLELNTLPGMTKNSLLPKSVAGAGISYTDLISLIIEES 295


>gi|261343730|ref|ZP_05971375.1| D-alanine--D-alanine ligase A [Providencia rustigianii DSM 4541]
 gi|282568113|gb|EFB73648.1| D-alanine--D-alanine ligase A [Providencia rustigianii DSM 4541]
          Length = 367

 Score =  311 bits (797), Expect = 9e-83,   Method: Composition-based stats.
 Identities = 90/346 (26%), Positives = 155/346 (44%), Gaps = 55/346 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44
           + V+ GG S+E EVSL S K   + L+   F V  I +++                    
Sbjct: 6   VGVIFGGKSTEHEVSLQSAKNIINGLDRNKFDVCLIGINKEGQWHEYDEANFLVHGDDPA 65

Query: 45  -----------------------VLAHLKP----DLAFNVLHGNFGEDGLVQAILELLEI 77
                                   L   KP    D+ F ++HGN GEDG +Q +L +  +
Sbjct: 66  HIALNTPKRSIAIVPGKQKEQFISLEDAKPLPQIDVIFPIVHGNLGEDGSLQGLLRMANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ------HLISPPYVIK 131
           P+   G+L S+  MDK  +K+++   G+ + P I + +   +          +  P  IK
Sbjct: 126 PFVGPGVLGSSACMDKDVTKRLLRDAGLNIAPFITILKSGREQISYAATVEKLGLPLFIK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+GI  +  +      L    ++    ++LIE  V G E+ C V+G+     + 
Sbjct: 186 PANQGSSVGISKVNNESEFYAAL--DFAFLFDVKVLIESAVKGREIECAVLGNEQPLASP 243

Query: 192 IA--VPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               V    FY+Y  KY     ++ V PA +   + ++++++A  A+QA+ C G+SR D 
Sbjct: 244 CGEIVLHDSFYAYHTKYIDENGASVVAPADLDEAVSEKIRQIALEAYQALNCSGMSRVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
                +  V   EIN  PG T +S++P++    G +++EL+  ++E
Sbjct: 304 FLT-DTNDVVINEINTLPGFTNISMYPKLWQQGGMTYQELISRLIE 348


>gi|313673681|ref|YP_004051792.1| d-alanine--d-alanine ligase [Calditerrivibrio nitroreducens DSM
           19672]
 gi|312940437|gb|ADR19629.1| D-alanine--D-alanine ligase [Calditerrivibrio nitroreducens DSM
           19672]
          Length = 298

 Score =  311 bits (797), Expect = 9e-83,   Method: Composition-based stats.
 Identities = 97/293 (33%), Positives = 160/293 (54%), Gaps = 10/293 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGF-KVSQIDVDRSVGLVLAHLKPDLAFNVLH 59
           +AVL GG+SSER+VS+ +G    +AL   GF     +DVD S+   L   KPD  +  LH
Sbjct: 6   IAVLYGGLSSERDVSIKTGNGIYNALLRKGFKNSFLLDVDWSLPEKLIKHKPDFCYIALH 65

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G +GEDG VQ +LE + IPY   G+ ASA+S DK+ +K+++ S  +P            +
Sbjct: 66  GRYGEDGTVQGLLEYMRIPYNGPGVTASAISFDKVITKKILKSVNIPTADYF----EYKN 121

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
            Q     P V+KP + GS++G+ ++ +D+     +    +  + +++++E+++ G ELT 
Sbjct: 122 EQSSPFYPCVVKPAREGSTIGVTIVYEDKEFIPAI--EDAKKYDNKIIVERFIKGKELTI 179

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
            ++ D  L +  I  PK  FY Y  KY+   + ++    +     + V+++A  A++ +G
Sbjct: 180 SIIDDLVLPIIWIK-PKKGFYDYTSKYTKGMTEYLFETGLNAKEEEMVKKVAKDAYEVVG 238

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           C G SR D ++D        LEIN  PGMT  S+ P  AA  G ++ EL+  +
Sbjct: 239 CEGASRVDIIYD--GDIPNVLEINTLPGMTETSLLPNAAAKYGIAYDELVEML 289


>gi|120555361|ref|YP_959712.1| D-alanine--D-alanine ligase [Marinobacter aquaeolei VT8]
 gi|190359162|sp|A1U3F6|DDL_MARAV RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|120325210|gb|ABM19525.1| D-alanine--D-alanine ligase [Marinobacter aquaeolei VT8]
          Length = 325

 Score =  311 bits (797), Expect = 9e-83,   Method: Composition-based stats.
 Identities = 104/297 (35%), Positives = 155/297 (52%), Gaps = 6/297 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AV MGG S+EREVSL SGKA  +AL+ AG      D+   +   +     D  F  LHG
Sbjct: 25  VAVFMGGDSAEREVSLKSGKAVLAALQSAGIDAVGRDIQGCLLRTVDEPDFDRVFIALHG 84

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--FTM 118
             GEDG +QAIL    IPYT S +LASAL+MDK+R+K V   CG+P      +       
Sbjct: 85  RGGEDGTLQAILGQAGIPYTGSEVLASALAMDKLRTKYVFEGCGLPTPAFRAMTSVGEAE 144

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                +  P  +KP   GSS+GI  +     +      ++     D +L+EQ+++G E T
Sbjct: 145 GIVAALGTPLSVKPAHEGSSIGIRKVNSAAELAEAYEAAARL--DDLVLVEQWIEGPEFT 202

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             ++ D +L    ++   + FY Y+ KY + ++ + +P  +  D    +Q LA  A + +
Sbjct: 203 VSLLQDKALPAIGLSTDHA-FYDYDAKYLADDTRYRIPCGLAPDDELRLQHLALDAFRVL 261

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           GCR   R D + D    + + LE+N  PGMT  S+ P  A  AG SF EL++ ++ D
Sbjct: 262 GCRTWGRVDIMQDRA-GEFWLLEVNTVPGMTDHSLVPMAAKAAGISFEELVVRILRD 317


>gi|261408448|ref|YP_003244689.1| D-alanine--D-alanine ligase [Paenibacillus sp. Y412MC10]
 gi|261284911|gb|ACX66882.1| D-alanine/D-alanine ligase [Paenibacillus sp. Y412MC10]
          Length = 305

 Score =  311 bits (797), Expect = 9e-83,   Method: Composition-based stats.
 Identities = 101/303 (33%), Positives = 166/303 (54%), Gaps = 9/303 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGG+SSEREVSL +GK   + L+ + ++V  I++     L+      D+A   LHG
Sbjct: 3   VGVIMGGVSSEREVSLMTGKEMIAHLDKSRYEVYPIEIHDKRELISKTEGIDIALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG VQ  L+ L IPYT SG+LAS+L MDK  SK+++   G+     I+V+     +
Sbjct: 63  AFGEDGTVQGTLDTLGIPYTGSGVLASSLCMDKDLSKKLLRYEGLHTADWIMVSCMEELA 122

Query: 121 Q---HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
                 +  P V+KP  GGSS+G  +++    +   + ++  W+    ++IEQ+++G E+
Sbjct: 123 AADVEGLGFPVVVKPNAGGSSIGTRIVRDSAGLASAVEEALRWDRF--VMIEQWIEGEEI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC V+    L +  I  P S+F+ Y  KY    +      ++P ++ ++V+  A   ++A
Sbjct: 181 TCPVLNGDMLPIVSIK-PNSEFFDYASKYEEGEADE-QVIELPTELQEQVRTAALQCYKA 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           + C   +R D +     +  + LE+N  PG+T  S+ P  A  AGYSF  LL  ++E + 
Sbjct: 239 MKCSVYARIDIIL--KGKIPYILEVNTLPGLTKTSLLPRSAEAAGYSFSGLLDALIETSL 296

Query: 298 CLR 300
             R
Sbjct: 297 SER 299


>gi|330973066|gb|EGH73132.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. aceris str.
           M302273PT]
          Length = 363

 Score =  311 bits (797), Expect = 9e-83,   Method: Composition-based stats.
 Identities = 97/354 (27%), Positives = 173/354 (48%), Gaps = 57/354 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR--------SVGLVLAHLKP- 51
           +A++ GG SSE EVSL S +   +A++   + ++ I VD+            +L    P 
Sbjct: 5   VAIVFGGQSSEHEVSLQSARNVINAIDRERYALTLIGVDKLGRWLHFDEADYLLNATDPA 64

Query: 52  ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
                                             D+ F ++HG FGEDG +Q +L +L +
Sbjct: 65  RIKLSASGKPLSLLPGSIGGQFVDVESGQPLAVIDVVFPLIHGAFGEDGALQGVLRMLAV 124

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT----MDSQHLISPPYVIKPL 133
           P+  + +L+SA  MDK  +K+++   G+ V P  +++R       ++   +  P  +KP 
Sbjct: 125 PFVGADVLSSAACMDKDVTKRLLRDAGIAVAPFRVLSRGESLSFTEAADQLGLPMFVKPA 184

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG--DASLDVTE 191
             GSS+G+  +  +      L     ++H  +LLIEQ + G E+ C V+G  DA + V  
Sbjct: 185 NQGSSVGVSKVSDEAGFAAALALGFEFDH--KLLIEQGIVGREVECAVLGNFDAQVSVCG 242

Query: 192 IAVPKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
             +   +FY+Y+ KY + +   + +PA++P D+  +V+ +A  A++ +GC G+SR DF  
Sbjct: 243 EVIANDEFYAYDTKYLNGDQARIAIPAELPADLSDQVRDVALQAYKVLGCAGLSRVDFFV 302

Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV----EDASCLR 300
               R +   E+N  PG T +S++P++   +G S+ EL+  ++    E A   R
Sbjct: 303 TE-GRDIIINEVNTLPGFTSISMYPKLWQASGLSYAELIHRLIVLALERADQAR 355


>gi|256379981|ref|YP_003103641.1| D-alanyl-alanine synthetase A [Actinosynnema mirum DSM 43827]
 gi|255924284|gb|ACU39795.1| D-alanine/D-alanine ligase [Actinosynnema mirum DSM 43827]
          Length = 355

 Score =  311 bits (797), Expect = 9e-83,   Method: Composition-based stats.
 Identities = 100/346 (28%), Positives = 159/346 (45%), Gaps = 50/346 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           +AV+ GG SSE  VS  S  +  + L+   F+V  + + R    V+              
Sbjct: 8   VAVVFGGRSSEHTVSCVSAGSVLAHLDRERFEVVPVGITRQGAWVVGSGDLAALEIRDRQ 67

Query: 47  ----------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84
                                 A    D+ F +LHG +GEDG VQ +LEL ++PY   G+
Sbjct: 68  MPTVDALVPVSGGELTTVSPDSALDGVDVVFPLLHGAWGEDGTVQGLLELADLPYVGPGV 127

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVNRFT----MDSQHLISPPYVIKPLKGGSSLG 140
           LASA +MDK  +K ++ + G+ V    ++ R         +  +  P  +KP + GSS+G
Sbjct: 128 LASAAAMDKEFTKTILRAAGLEVGSFAVLRRDQATLSEADRDRLGLPLFVKPARAGSSVG 187

Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG------DASLDVTEIAV 194
           I  +     +  D   + +     +++IE  V G E+ CGV+       +ASL      V
Sbjct: 188 ITKVTDWADL--DAAIAFARQTDPKVIIEAAVTGREVECGVLELPDGRVEASLPAELRVV 245

Query: 195 PKS-DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
               D+Y ++ KY        +PAK+  D  + ++ LA  A +A+ C+G++R DF     
Sbjct: 246 GGGVDWYDFDAKYLDDVCEFDIPAKLADDTTERLRALAVEAFRALDCQGLARVDFFVTE- 304

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
              +   EIN  PG TP+S++P M    G S+R+LL  +VE A   
Sbjct: 305 DGGLVVNEINTMPGFTPISMYPRMWEVTGTSYRDLLTTLVETAIAR 350


>gi|329927923|ref|ZP_08281951.1| D-ala D-ala ligase N-terminal domain protein [Paenibacillus sp.
           HGF5]
 gi|328938142|gb|EGG34538.1| D-ala D-ala ligase N-terminal domain protein [Paenibacillus sp.
           HGF5]
          Length = 305

 Score =  311 bits (797), Expect = 9e-83,   Method: Composition-based stats.
 Identities = 101/303 (33%), Positives = 166/303 (54%), Gaps = 9/303 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGG+SSEREVSL +GK   + L+ + ++V  I++     L+      D+A   LHG
Sbjct: 3   VGVIMGGVSSEREVSLMTGKEMIAHLDKSRYEVYPIEIHDKRELISKTEGIDIALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG VQ  L+ L IPYT SG+LAS+L MDK  SK+++   G+     I+V+     +
Sbjct: 63  AFGEDGTVQGTLDTLGIPYTGSGVLASSLCMDKDLSKKLLRYEGLHTADWIMVSCMEELA 122

Query: 121 Q---HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
                 +  P V+KP  GGSS+G  +++    +   + ++  W+    ++IEQ+++G E+
Sbjct: 123 AADVEGLGFPVVVKPNAGGSSIGTRIVRDSAGLASAVEEALRWDRF--VMIEQWIEGEEI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC V+    L +  I  P S+F+ Y  KY    +      ++P ++ ++V+  A   ++A
Sbjct: 181 TCPVLNGDMLPIVSIK-PNSEFFDYASKYEEGEADE-QVIELPTELQEQVRTAALQCYKA 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           + C   +R D +     +  + LE+N  PG+T  S+ P  A  AGYSF  LL  ++E + 
Sbjct: 239 MKCSVYARIDIIL--KGKIPYILEVNTLPGLTKTSLLPRSAEAAGYSFSGLLDALIETSL 296

Query: 298 CLR 300
             R
Sbjct: 297 SER 299


>gi|302537152|ref|ZP_07289494.1| D-alanylalanine synthetase [Streptomyces sp. C]
 gi|302446047|gb|EFL17863.1| D-alanylalanine synthetase [Streptomyces sp. C]
          Length = 385

 Score =  310 bits (796), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 98/363 (26%), Positives = 157/363 (43%), Gaps = 71/363 (19%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +AV+ GG SSE  +S+ +  A   +++ + ++V  I +       L    P         
Sbjct: 19  VAVVFGGRSSEHAISVVTAGAVLRSIDRSKYEVLPIGITTDGRWALTADAPERMAIADRQ 78

Query: 52  -----------------------------------------DLAFNVLHGNFGEDGLVQA 70
                                                    D+ F VLHG +GEDG +Q 
Sbjct: 79  LPSVEALAESPDGTVVLPVDPASREVVYTEPGAVPKALGEVDVVFPVLHGPYGEDGTLQG 138

Query: 71  ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI------ 124
           +LEL  IPY   G+L+SA+  DK   K+V +S G+ V P + +     ++          
Sbjct: 139 LLELSGIPYVGCGVLSSAVGQDKDYMKRVFASYGLNVGPYVTIRPREWEADQAAATAKVL 198

Query: 125 ------SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                   P  +KP + GSS+GI  +  D +  LD     +  H  ++++E  + G E+ 
Sbjct: 199 DFAGEHGWPLFVKPARAGSSIGITKV--DDASGLDAAIREARRHDPKVIVEALLRGREIE 256

Query: 179 CGVMG-----DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           CGV+       AS       V   DFY +E KY   ++T ++PA +  +   EVQ+LA  
Sbjct: 257 CGVLEFEDGPRASAPAEIPPVSSHDFYDFEAKY-IDSATGLVPAPLTPEQTAEVQKLAID 315

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           A +A  C G+ R+DF            EIN  PG TP+S++P M   +G  + EL+  ++
Sbjct: 316 AFEAASCEGLVRADFFLTE-DGTFVINEINTMPGFTPISMYPRMWQESGIEYPELVDRLI 374

Query: 294 EDA 296
           + A
Sbjct: 375 QAA 377


>gi|149196275|ref|ZP_01873330.1| D-alanylalanine synthetase [Lentisphaera araneosa HTCC2155]
 gi|149140536|gb|EDM28934.1| D-alanylalanine synthetase [Lentisphaera araneosa HTCC2155]
          Length = 1029

 Score =  310 bits (796), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 99/299 (33%), Positives = 163/299 (54%), Gaps = 7/299 (2%)

Query: 1    MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
            +AVL GG SSER +SL S +A A AL D G +V++ID+       ++    DL F VLHG
Sbjct: 732  IAVLKGGPSSERPISLQSAEAVAKALRDGGHEVTEIDITDFSLPAISK-DIDLVFPVLHG 790

Query: 61   NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             FGEDG VQ ++E    PY    I +S L +DK  +   + + G+PVC S+++     + 
Sbjct: 791  EFGEDGQVQKLIEGQGFPYVGCDITSSELCIDKDAAVCELRNSGLPVCDSVVLRSKDEEI 850

Query: 121  QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
               I+ P V+KP + GSS+ + +++K+  +   +    ++ + D +L+E +  GIE T G
Sbjct: 851  SQNITLPCVVKPNRQGSSISLSLVEKEGDLRKAIDL--AFENDDTVLVESFFKGIECTVG 908

Query: 181  VMGDASLDVTEIAVPKSDFYSYELKYSS--LNSTHVLPA-KIPLDIYKEVQRLAFLAHQA 237
            ++   +L V EI  P+  F+ Y+ KY+     + +  P  +IP D+ + +++    + + 
Sbjct: 909  LIDGKALSVVEIIPPE-GFFDYDAKYTYSKGKTQYNCPPKEIPEDVSERLKKCGEESFKV 967

Query: 238  IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            +  R + R D +++P S K   LE N  PG T  S+ P+ A   G SF EL   + + A
Sbjct: 968  LKGRHLMRVDMIWNPDSDKFIILEANTMPGFTSSSLLPKAAKRDGISFTELCCGLAKKA 1026


>gi|297172655|gb|ADI23623.1| D-alanine-D-alanine ligase and related ATP-grasp enzymes
           [uncultured gamma proteobacterium HF4000_06A21]
          Length = 359

 Score =  310 bits (796), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 95/349 (27%), Positives = 169/349 (48%), Gaps = 53/349 (15%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH-------------- 48
           +L GG S+E EVS+ S ++  +A++   ++   + + R    +LA               
Sbjct: 3   LLFGGQSAEHEVSVISARSVYAAIDRQRYEPILVGITRQGSWLLAGSDASILEHDTVDDM 62

Query: 49  -------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                    +  D+ F +LHG FGEDG +Q +LEL+ + Y  +G
Sbjct: 63  SLPVVYLASAGQELKVSNASPHDQGVSVDVVFPLLHGPFGEDGTIQGLLELVGMAYVGAG 122

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTMDSQHL-------ISPPYVIKPLK 134
           + AS++ MDK  +K + ++ G+      ++  NR+  D++ +       +  P  +KP  
Sbjct: 123 VAASSVGMDKALAKLIFNASGLSQTAYQVIGRNRWHADAETVVFNIEKHLQYPLFVKPAN 182

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIA 193
            GSS+G+   K   S+   L  ++   +  ++L+E+ V D  E+ C V+G+ S   + I 
Sbjct: 183 MGSSVGVSKAKDAASLTKALDIAA--QYDVKMLVEESVEDCHEVECAVLGNDSPRASIIG 240

Query: 194 --VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
             +P +DFY Y+ KY    S  ++PA +   +   VQ +A  A Q+I C G++R DF   
Sbjct: 241 EIIPGADFYDYQTKYLDDRSELIVPANLSSSVSNMVQGMAIKAFQSIDCTGLARVDFFVR 300

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
                +F  EIN  PG TP+S++P +   +G ++ EL+  +++ A   R
Sbjct: 301 RADDFIFINEINTMPGFTPISMYPILWQASGLTYPELIDQLIQLAVERR 349


>gi|257885748|ref|ZP_05665401.1| D-alanine:D-alanine ligase [Enterococcus faecium 1,231,501]
 gi|260558405|ref|ZP_05830601.1| D-alanine-D-alanine ligase [Enterococcus faecium C68]
 gi|293556889|ref|ZP_06675450.1| D-alanine--D-alanine ligase [Enterococcus faecium E1039]
 gi|257821604|gb|EEV48734.1| D-alanine:D-alanine ligase [Enterococcus faecium 1,231,501]
 gi|260075579|gb|EEW63885.1| D-alanine-D-alanine ligase [Enterococcus faecium C68]
 gi|291600973|gb|EFF31264.1| D-alanine--D-alanine ligase [Enterococcus faecium E1039]
          Length = 358

 Score =  310 bits (796), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 90/342 (26%), Positives = 159/342 (46%), Gaps = 51/342 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV-------------LA 47
           + +L GG S+E EVS+ S  +  +A+    ++V  I + +    V             + 
Sbjct: 3   ITLLYGGRSAEHEVSILSAFSVLNAIYYNYYQVQLIFITKEGQWVKGPLLTEKPASKDVL 62

Query: 48  HLKPD------------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
           HL  D                        + F VLHG  GEDG +Q  LE L +PY  +G
Sbjct: 63  HLSWDPSGQTEEGFTGKVINPGEIKEEGAIVFPVLHGPNGEDGTIQGFLETLNMPYVGAG 122

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLK 134
           +L SA +MDK+ +K ++ + GVP  P + V +              +  +  P  +KP  
Sbjct: 123 VLTSACAMDKIMTKYILQAAGVPQVPYVPVLKNQWKENPKKVFDQCEGSLLYPMFVKPAN 182

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI-- 192
            GSS+GI   +  + +   L  ++++ +  + ++EQ ++  E+   V+G+  +  T    
Sbjct: 183 MGSSVGITKAENREELQNAL--ATAYQYDSRAIVEQGIEAREIEVAVLGNEDVRTTLPGE 240

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            V    FY YE KY +      +PA++P ++Y++ Q  A LA+  +G  G+SR DF    
Sbjct: 241 VVKDVAFYDYEAKYINNKIEMQIPAEVPEEVYQKAQEYAKLAYTMLGGSGLSRCDFFLTN 300

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
              ++F  E+N  PG T  S++P +    G  + +L+  +++
Sbjct: 301 K-NELFLNELNSMPGFTEFSMYPLLWENMGLKYGDLIEELIQ 341


>gi|78045802|ref|YP_361977.1| D-alanyl-alanine synthetase A [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|78034232|emb|CAJ21877.1| D-alanine--D-alanine ligase A [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
          Length = 367

 Score =  310 bits (796), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 94/348 (27%), Positives = 165/348 (47%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           + ++ GG S+E EVSL S +    AL+   F+   I +D+     +              
Sbjct: 6   VGLIFGGKSAEHEVSLQSARNILDALDPQRFEPVLIGIDKQGQWHVNDPDSFLLHADDPA 65

Query: 47  -----------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEI 77
                                        A  + D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  RIALHRSGRGVALLPGAQQQQVRPIQPEQALAQIDVVFPIVHGTLGEDGSLQGLLRMANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT---MDSQHLI---SPPYVIK 131
           P+  SG+L SA++MDK  +K+V+   G+ V P +  NR T    D + LI     P  +K
Sbjct: 126 PFVGSGVLGSAVAMDKDMAKRVLRDAGLAVAPFVCFNRHTAAMADVEALIAQFGLPLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  ++        L  + ++++  ++L+E  + G E+ C V+G+A+   + 
Sbjct: 186 PANQGSSVGVSQVRSADQFAAALALALAYDY--KVLVEAAIAGREIECAVLGNATPQASV 243

Query: 192 I--AVPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               V    FYSY+ KY S   +  V+PA I     + +Q++A  A+QA+ C G++R D 
Sbjct: 244 CGEVVVHDAFYSYQTKYISEHGAEIVIPADIDARTQQRIQQIAVQAYQALDCAGLARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                  ++   E+N  PG T +S++P++   +G  +R L+  ++E A
Sbjct: 304 FL-CADGRIVINEVNTLPGFTRISMYPKLWQASGLDYRSLIARLIELA 350


>gi|182682480|ref|YP_001830640.1| D-alanine--D-alanine ligase [Xylella fastidiosa M23]
 gi|182632590|gb|ACB93366.1| D-alanine--D-alanine ligase [Xylella fastidiosa M23]
 gi|307578761|gb|ADN62730.1| D-alanine--D-alanine ligase [Xylella fastidiosa subsp. fastidiosa
           GB514]
          Length = 320

 Score =  310 bits (796), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 102/302 (33%), Positives = 165/302 (54%), Gaps = 11/302 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL SG+     L   G     +D   ++   L   + D  FNVLHG
Sbjct: 21  VAVLLGGTSAEREVSLLSGRNVLEVLRMRGVDAQSVDGVPALAQALVERRFDRVFNVLHG 80

Query: 61  --NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
               GEDG+VQ +++   +PYT S +L SALSMDK+R+KQV  + G+P      ++    
Sbjct: 81  HNGGGEDGVVQGLMQAFGVPYTGSDVLGSALSMDKVRTKQVWLALGLPTPRYASLSVCAT 140

Query: 119 DSQ-----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
             +      ++  P +IKP K GSS+G+  +   + +   +  ++ +    +LL+EQ ++
Sbjct: 141 AVEVRKAVEMLGFPVIIKPAKEGSSVGVSRVFALEHLEEAVALAARYE--GELLMEQLIE 198

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           G ELT  ++ + +L    I VP+  +Y Y  KY + ++ +V P  +      E+ +LA  
Sbjct: 199 GDELTVSILDEMALPSIRI-VPQGQWYDYNAKYLAEDTQYVCP-GLDDVAEAEIAQLALA 256

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           A  ++GCRG  R D + +  S + F LE+N  PGMT  S+ P+ A+  G  F +L+  ++
Sbjct: 257 AFHSVGCRGWGRVDVMRERGSGRFFLLEVNTAPGMTTHSLVPKAASQLGMGFDDLVWRIL 316

Query: 294 ED 295
           E 
Sbjct: 317 EQ 318


>gi|54309150|ref|YP_130170.1| D-alanine-D-alanine ligase B [Photobacterium profundum SS9]
 gi|46913582|emb|CAG20368.1| hypothetical D-alanine-D-alanine ligase B [Photobacterium profundum
           SS9]
          Length = 308

 Score =  310 bits (796), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 103/301 (34%), Positives = 169/301 (56%), Gaps = 10/301 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VL+GG SSER VSL SG+    A+E  G +   ID       ++   K D  F  LHG
Sbjct: 7   IGVLLGGESSERSVSLKSGECVVKAIESLGHEAISIDPKHIDVTLMGFFKLDKVFIALHG 66

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--M 118
             GE G VQA+L+LL+IPYT SG LASA+S++K+ SK++  S  +     + +++     
Sbjct: 67  GIGESGHVQALLDLLKIPYTGSGTLASAMSLNKLNSKEIWQSNSLKSADWVTLHKHAPIE 126

Query: 119 DSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175
           D +  +S    P V+KP+  G S+G+  +  +  +   ++  +++ + D +LIE ++ G 
Sbjct: 127 DIKAQLSSVVCPVVVKPISQGCSIGVSKVDNNADLLEAVI--TAFEYDDDILIESFIAGR 184

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
           E TC V+    L + +I      F+ Y+ K+ S ++T+  P+ +  +  +++Q LA  A+
Sbjct: 185 EYTCAVLNGKPLPIVQIR--SEQFFDYDAKFGSQSATYHCPSDLTSEQERDMQALALNAY 242

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
            A+GCRG  R D + D     VF +E+N  PGMT  S+FP  A  AG SF +++  +++ 
Sbjct: 243 NALGCRGWGRVDTILDES-GDVFLIEMNTIPGMTTRSVFPMAAKEAGLSFGQVISSLLDS 301

Query: 296 A 296
           A
Sbjct: 302 A 302


>gi|145224798|ref|YP_001135476.1| D-alanyl-alanine synthetase A [Mycobacterium gilvum PYR-GCK]
 gi|190359168|sp|A4TE25|DDL_MYCGI RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|145217284|gb|ABP46688.1| D-alanine--D-alanine ligase [Mycobacterium gilvum PYR-GCK]
          Length = 367

 Score =  310 bits (796), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 103/360 (28%), Positives = 164/360 (45%), Gaps = 65/360 (18%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +AV+ GG SSE  +S  S  +    L+   F+V+ + +      VL   +P         
Sbjct: 7   VAVVYGGRSSEHAISCVSAGSILRNLDPDRFEVTAVGITPEGSWVLTEGRPETLAITDGK 66

Query: 52  --------------------------------------DLAFNVLHGNFGEDGLVQAILE 73
                                                 D+ F VLHG +GEDG +Q +LE
Sbjct: 67  LPGVTGDSGTALTLTADPARRGQLVSLGEAAGEVLASADVVFPVLHGPYGEDGTIQGLLE 126

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT----MDSQHLISPPYV 129
           L  +PY  +G+LASA  MDK  +K++++S G+PV   +++        +  +  +  P  
Sbjct: 127 LAGVPYVGAGVLASAAGMDKEFTKKLLASAGLPVGDHVVLRARDSTLSLQDRERLGLPVF 186

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG--DASL 187
           +KP +GGSS+G+  +     +P  +    +  H  +++IE  V G EL CGV+   D  L
Sbjct: 187 VKPSRGGSSIGVSRVTAWDELPAAI--ELARRHDPKVIIEAAVPGRELECGVLEFPDGHL 244

Query: 188 DVT---EIAVP-----KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
           + +   EI V      +  FY +E KY    +   +PAK+  D+ + ++ L+  A  AI 
Sbjct: 245 EASTLGEIRVEGVRGREDGFYDFETKYLDDGAELDVPAKVDDDVAEAIRALSLRAFTAID 304

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
           C+G++R DF            EIN  PG T +S++P M A +G  +  LL  MVE A   
Sbjct: 305 CQGLARVDFFLT--DDGPVINEINTMPGFTTISMYPRMWAASGVDYPTLLATMVETALAR 362


>gi|330877371|gb|EGH11520.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 363

 Score =  310 bits (795), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 98/354 (27%), Positives = 174/354 (49%), Gaps = 57/354 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR--------SVGLVLAHLKP- 51
           +A++ GG SSE EVSL S +   +A++   + ++ I VD+            +L    P 
Sbjct: 5   VAIVFGGQSSEHEVSLQSARNVINAIDRESYALTLIGVDKLGRWLRFDEADYLLNANDPA 64

Query: 52  ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
                                             D+ F ++HG FGEDG +Q +L +L +
Sbjct: 65  RIKLSGSGKQLSLLPGSAGGQFVEVESGKPLTAIDVVFPLIHGAFGEDGALQGLLRMLAV 124

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT----MDSQHLISPPYVIKPL 133
           P+  + +LASA  MDK  +K+++   G+ V P +++NR        +   +S P  +KP 
Sbjct: 125 PFVGADVLASAACMDKDVTKRLLRDAGIAVAPFMVLNRGESLSFAQAAAQLSLPMFVKPA 184

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI- 192
             GSS+G+  +  +      L     ++H  +LLIEQ + G E+ C V+G+    V+   
Sbjct: 185 NQGSSVGVSKVSDEAGFAAALALGFEFDH--KLLIEQGIVGREVECAVLGNNEAQVSVCG 242

Query: 193 -AVPKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
             +   +FY+Y+ KY + +   + +PA++P D+  +V+ +A  A++ +GC G+SR DF  
Sbjct: 243 EVIANDEFYAYDTKYLNGDQARIAIPAELPADLSDQVRDVALQAYKVLGCAGLSRVDFFV 302

Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV----EDASCLR 300
               R++   E+N  PG T +S++P++   +G S+ EL+  ++    E A   R
Sbjct: 303 TEA-REIIINEVNTLPGFTSISMYPKLWQASGLSYAELIHRLIVLALESADEAR 355


>gi|330950024|gb|EGH50284.1| D-alanyl-alanine synthetase A [Pseudomonas syringae Cit 7]
          Length = 363

 Score =  310 bits (795), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 97/354 (27%), Positives = 173/354 (48%), Gaps = 57/354 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR--------SVGLVLAHLKP- 51
           +A++ GG SSE EVSL S +   +A++   + ++ I VD+            +L    P 
Sbjct: 5   VAIVFGGQSSEHEVSLQSARNVINAIDRERYALTLIGVDKLGRWLHFDEADYLLNATDPA 64

Query: 52  ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
                                             D+ F ++HG FGEDG +Q +L +L +
Sbjct: 65  RIKLSASGKPLSLLPGSIGGHFVDVESGQPLAAIDVVFPLIHGAFGEDGALQGVLRMLAV 124

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT----MDSQHLISPPYVIKPL 133
           P+  + +L+SA  MDK  +K+++   G+ V P  +++R       ++   +  P  +KP 
Sbjct: 125 PFVGADVLSSAACMDKDVTKRLLRDAGIAVAPFRVLSRGESLSFTEAADQLGLPMFVKPA 184

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG--DASLDVTE 191
             GSS+G+  +  +      L     ++H  +LLIEQ + G E+ C V+G  DA + V  
Sbjct: 185 NQGSSVGVSKVSDEAGFAAALALGFEFDH--KLLIEQGIVGREVECAVLGNFDAQVSVCG 242

Query: 192 IAVPKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
             +   +FY+Y+ KY + +   + +PA++P D+  +V+ +A  A++ +GC G+SR DF  
Sbjct: 243 EVIANDEFYAYDTKYLNGDQARIAIPAELPADLSDQVRDVALQAYKVLGCAGLSRVDFFV 302

Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV----EDASCLR 300
               R +   E+N  PG T +S++P++   +G S+ EL+  ++    E A   R
Sbjct: 303 TE-GRDIIINEVNTLPGFTSISMYPKLWQASGLSYAELIHRLIVLALERADQAR 355


>gi|71275120|ref|ZP_00651407.1| D-alanine--D-alanine ligase [Xylella fastidiosa Dixon]
 gi|170731109|ref|YP_001776542.1| D-alanine--D-alanine ligase [Xylella fastidiosa M12]
 gi|71163929|gb|EAO13644.1| D-alanine--D-alanine ligase [Xylella fastidiosa Dixon]
 gi|167965902|gb|ACA12912.1| D-alanine--D-alanine ligase [Xylella fastidiosa M12]
          Length = 320

 Score =  310 bits (795), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 103/302 (34%), Positives = 165/302 (54%), Gaps = 11/302 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL SG+     L   G     +D   ++   L   + D  FNVLHG
Sbjct: 21  VAVLLGGTSAEREVSLLSGRNVLEVLRMRGVDAQSVDGVPALAQALVERRFDRVFNVLHG 80

Query: 61  --NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
               GEDG+VQ +++   +PYT S +LASALSMDK+R+KQV  + G+P      ++    
Sbjct: 81  HNGGGEDGVVQGLMQAFGVPYTGSDVLASALSMDKVRTKQVWLALGLPTPRYASLSVCAT 140

Query: 119 DSQ-----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
             +      ++  P +IKP K GSS+G+  +   + +   +  ++ +    +LL+EQ ++
Sbjct: 141 AVEVRKAVEMLGFPVIIKPAKEGSSVGVSRVFALEHLEEAVALAARYE--GELLMEQLIE 198

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           G ELT  ++ + +L    I VP+  +Y Y  KY + ++ +V P  +      E+ +LA  
Sbjct: 199 GDELTVSILDEMALPSIRI-VPQGQWYDYNAKYLAEDTQYVCP-GLDDVAEAEIAQLALA 256

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           A   +GCRG  R D + +  S + F LE+N  PGMT  S+ P+ A+  G  F +L+  ++
Sbjct: 257 AFHGVGCRGWGRVDVMRERSSGRFFLLEVNTAPGMTTHSLVPKAASQLGMGFDDLVWRIL 316

Query: 294 ED 295
           E 
Sbjct: 317 EQ 318


>gi|16330269|ref|NP_440997.1| D-alanyl-alanine synthetase A [Synechocystis sp. PCC 6803]
 gi|2829607|sp|P73632|DDL_SYNY3 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|1652758|dbj|BAA17677.1| D-alanine:D-alanine ligase-related protein [Synechocystis sp. PCC
           6803]
          Length = 354

 Score =  310 bits (795), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 92/344 (26%), Positives = 158/344 (45%), Gaps = 50/344 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDA----GFKVSQIDVDRSVGLVL---------- 46
           + +L GG S E EVS+ S +A A AL        ++VS   + ++   +           
Sbjct: 3   VGLLFGGCSGEHEVSIKSAQAIAKALASDDNQTKYQVSPFYIQKNGVWLGPDVSQQVLDQ 62

Query: 47  -------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87
                                 + ++ F +LHG  GEDG VQ +  L+++PY  SG+L S
Sbjct: 63  GVPWGDQPVTAGQRWQFPPEAARMEVWFPILHGPNGEDGTVQGLFSLMQVPYVGSGVLGS 122

Query: 88  ALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------------QHLISPPYVIKPLKG 135
            + MDK+  K V    G+P    + V R  + S            +  +  P  +KP   
Sbjct: 123 CVGMDKLAMKMVFERAGLPQVNYMGVERGEIWSNPCVFPALCEKIEAQVGYPCFVKPANL 182

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASL--DVTEI 192
           GSS+GI  ++    +   L  ++S++   ++++E  +    E+ C V+G+ +    V   
Sbjct: 183 GSSVGIAKVRNRSELEAALDNAASYDR--RIIVEAGLTDIREVECAVLGNENPQASVVGE 240

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
               SDFY YE KY+   S   +PA +P  +  ++Q +A  A +A+   G+ R DF + P
Sbjct: 241 ITYDSDFYDYETKYTDGRSQMHIPANLPKAVVNQIQTMAIQAFKAVDAAGLGRLDFFYQP 300

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            + ++   EIN  PG T  S++PE+   +G  F  L+  +++ A
Sbjct: 301 TTGQIVINEINTLPGFTAFSMYPELWRASGVEFPSLVDRLLQLA 344


>gi|255659953|ref|ZP_05405362.1| D-alanine--D-alanine ligase [Mitsuokella multacida DSM 20544]
 gi|260847827|gb|EEX67834.1| D-alanine--D-alanine ligase [Mitsuokella multacida DSM 20544]
          Length = 312

 Score =  310 bits (795), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 101/307 (32%), Positives = 170/307 (55%), Gaps = 15/307 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-SVGLVLAHLKPDLAFNVLH 59
           + V+MGG S+E E+S  +G A   AL+  G+    ++++  +    +      + FN LH
Sbjct: 6   IVVVMGGPSTEAEISRQTGSAILKALQSKGYNAEGMELNPPTFAEDIKKSGCAIVFNALH 65

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM- 118
           G FGEDG++Q  L++L IPYT SG+LA+A++MDK  SK+V  + G+    S    R+ M 
Sbjct: 66  GKFGEDGVLQGTLDMLGIPYTGSGVLAAAVTMDKAASKRVFVAEGISTPRSHTYYRYEMK 125

Query: 119 -----DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
                + +   S P V+K    GSS+G+ +++   ++   L +  ++++ D++L+E+++ 
Sbjct: 126 RDLAAEIKQGFSLPVVVKAASQGSSIGVYIVETKDALEDALKE--AFSYNDEVLVEEFIR 183

Query: 174 GIELTCGVMGD----ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           G ELT  V G+     +  + EI    S  Y YE KY+   STH++PA++  +  KE+Q 
Sbjct: 184 GKELTVAVWGNEEKKEAFPIIEITT-TSGRYDYESKYTKGASTHIIPARVSAEKTKEIQD 242

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           LA     A GC+G++R D +        + +E+N  PGMT +S+ P+     G  F EL 
Sbjct: 243 LAIKTFTACGCKGVARVDMMLSE-DGTPYVIEVNSVPGMTELSLVPDAGRAMGVEFPELC 301

Query: 290 LWMVEDA 296
             ++E A
Sbjct: 302 ERILEMA 308


>gi|282855332|ref|ZP_06264661.1| vancomycin/teicoplanin A-type resistance protein VanA (VanA ligase)
           (D-alanine--D-lactate ligase) [Pyramidobacter piscolens
           W5455]
 gi|282586831|gb|EFB92070.1| vancomycin/teicoplanin A-type resistance protein VanA (VanA ligase)
           (D-alanine--D-lactate ligase) [Pyramidobacter piscolens
           W5455]
          Length = 355

 Score =  310 bits (795), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 95/345 (27%), Positives = 161/345 (46%), Gaps = 50/345 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------------------- 40
           +A+L GG SSE EVS  SG   A  ++   + +  I + +                    
Sbjct: 7   VALLFGGQSSEHEVSCVSGATVARNIDREKYDLLLIGITKEGRWLHVDSTDQIASGEWRR 66

Query: 41  ------------------SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
                             S G   +  + D+ F VLHG +GEDG  Q I EL +IPY   
Sbjct: 67  GRRGAALLPDAALKSVLLSDGEKFSLARVDVLFPVLHGLYGEDGCPQGIAELAQIPYVGC 126

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--------QHLISPPYVIKPLK 134
            +L+SA +MDK  +K V++ CG+P        R  +D         +  +S P  +KP  
Sbjct: 127 DVLSSAATMDKATTKAVLARCGIPQARYAAFRREELDDMGGVVRRVESELSYPVFVKPSN 186

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA- 193
            GSS G+        +   L  +++     +++ E+ + G EL C ++G    + + +  
Sbjct: 187 AGSSCGVSKAGSRAQLVEALKLAAA--QDCKVIAEETIVGRELECALLGGWDAEASGVGE 244

Query: 194 -VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            +  ++FY Y+ KY S  S  V+   +P    +E++ +A    +A+ CRG+SR+DF  + 
Sbjct: 245 ILAGAEFYDYDAKYRSSASRTVVDPPLPPGKREEIRAMAKKIFRALDCRGLSRADFFLEK 304

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
            + +V + EIN  PG T +S++P++   AG    EL+  ++E A+
Sbjct: 305 DTDRVVFNEINTIPGFTAISMYPKLWEAAGVPLPELVEKLIESAA 349


>gi|167564197|ref|ZP_02357113.1| D-alanine--D-alanine ligase B [Burkholderia oklahomensis EO147]
 gi|167571347|ref|ZP_02364221.1| D-alanine--D-alanine ligase B [Burkholderia oklahomensis C6786]
          Length = 312

 Score =  310 bits (795), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 97/300 (32%), Positives = 153/300 (51%), Gaps = 11/300 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+ER+VSL+SG+     L DAG      D        L       AFN LHG
Sbjct: 12  VAVLLGGESAERDVSLNSGRLVLQGLRDAGIDAHPFDPAERPLSALKDEGFARAFNALHG 71

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118
            +GE+G +Q  L+   I YT SG+L SAL +DK R+K V    G+P  P   V R     
Sbjct: 72  GYGENGQIQGALDFYGIRYTGSGVLGSALGLDKFRTKLVWQQTGIPTPPFETVMRGDDYA 131

Query: 119 ----DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD- 173
               D    +  P  +KP   GSS+ ++ +K   ++P       +  H   +++E+ ++ 
Sbjct: 132 ARAKDIVAKLGVPLFVKPASEGSSVAVLKVKSADALPA--ALEEAAKHDKIVIVEKSIEG 189

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           G E T  +  D  L + +I VP  +FY Y  KY + ++ +++P  +       ++R+A  
Sbjct: 190 GGEYTACIAADLDLPLIKI-VPAGEFYDYHAKYIADDTQYLIPCGLDAAKEAALKRIARR 248

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           A   +GC    R+DF+ D      ++LE+N  PGMT  S+ P+ A   G S+ EL++ ++
Sbjct: 249 AFDVLGCTDWGRADFMLDAAGNA-YFLEVNTAPGMTDHSLPPKAARAVGISYSELVVKVL 307


>gi|299135996|ref|ZP_07029180.1| D-alanine/D-alanine ligase [Acidobacterium sp. MP5ACTX8]
 gi|298602120|gb|EFI58274.1| D-alanine/D-alanine ligase [Acidobacterium sp. MP5ACTX8]
          Length = 372

 Score =  310 bits (795), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 94/353 (26%), Positives = 169/353 (47%), Gaps = 59/353 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           + +L GG S E E+SL S ++   A++   + V ++ + +    +               
Sbjct: 8   VGILFGGKSGEHEISLRSARSILKAIDRKKYDVVELGITKEGRWLQSSAAQALLGGESQP 67

Query: 46  -------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
                               A    D+ F VLHG FGEDG +Q + EL +I Y  SG+L 
Sbjct: 68  SEDLSGETGLTIAAAAAEPAAGTGLDVVFPVLHGTFGEDGTIQGLFELADIAYVGSGVLG 127

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGS 137
           S+  MDK   K++  + G+P+ P + + R    +         +  +  P  +KP   GS
Sbjct: 128 SSAGMDKDAMKRMFFAAGLPMTPHVTLLRSEWRADAKKSTRLIEKTLQYPVFVKPANLGS 187

Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-----IELTCGVMGDASLDVTEI 192
           S+GI  +K    + + +  ++S++   +++IEQ V G      EL   V+G+ + + + +
Sbjct: 188 SVGISKVKSRADLAVAMDLAASFDR--KIVIEQGVGGPGVKPRELEVAVLGNDTPEASVV 245

Query: 193 A--VPKSDFYSYELKYSSLNSTH---VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
              VP  +FY YE KY    +     ++PAK+     K+++ +A  A +A  C G++R D
Sbjct: 246 GEIVPAKEFYDYEAKYELNGADESVSIIPAKLTKAEEKKIRAMAIAAFRACDCAGLARVD 305

Query: 248 FLFDPLSR----KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           FL  P S+    ++   EIN  PG T +S++P++   +G ++ +L+  ++E A
Sbjct: 306 FLMAPASKGKPAEIVLNEINTLPGFTSISMYPKLWGASGVNYSKLIDRLIELA 358


>gi|220931741|ref|YP_002508649.1| D-alanine--D-alanine ligase [Halothermothrix orenii H 168]
 gi|254767731|sp|B8CWI5|DDL_HALOH RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|219993051|gb|ACL69654.1| D-alanine--D-alanine ligase [Halothermothrix orenii H 168]
          Length = 343

 Score =  310 bits (795), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 87/341 (25%), Positives = 151/341 (44%), Gaps = 44/341 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           + VL GG S E EVS+ S ++     +   +KV    + +    V               
Sbjct: 6   LGVLFGGRSQEHEVSVMSARSVVKMAKKEKYKVIPFGITKKGQWVGPEESWNILNNGINE 65

Query: 50  -------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
                              K D+ F VLHG +GEDG +Q  L+ L+IPY  + +L+SA  
Sbjct: 66  VKASKDRCITESVRVFLDHKLDIVFPVLHGPYGEDGKLQGFLDCLDIPYIGASVLSSAAG 125

Query: 91  MDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSLGI 141
           MDK   K + S   +P     +  +  +++            +  P  +KP   GSS+G+
Sbjct: 126 MDKEIMKNLFSYHKIPQARYRVYRQNHLENGLDGIISEIDRFLGWPCFVKPANMGSSIGV 185

Query: 142 IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA--VPKSDF 199
             +     +   L     + +  +L+ E++V+G E+ C V+G+  ++ +     +P  +F
Sbjct: 186 SKVHSPGEVKKAL--EKGFYYDRKLIFEEFVEGREIECSVLGNDQVEASLPGEILPGKEF 243

Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
           Y YE KY    +  V+PA +   +  + + LA  A +AI   G +R DF     +  +  
Sbjct: 244 YDYEAKYKDNKTRLVIPASLDESVIDKARNLAIKAFKAIDGNGFARVDFFL-KNNGVLLV 302

Query: 260 LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
            EIN  PG T  S++P++    G ++ +L+  ++E A   R
Sbjct: 303 NEINTIPGFTQYSMYPKLWEATGLNYPDLIDKLIELALEDR 343


>gi|315648570|ref|ZP_07901668.1| D-alanine--D-alanine ligase [Paenibacillus vortex V453]
 gi|315276049|gb|EFU39396.1| D-alanine--D-alanine ligase [Paenibacillus vortex V453]
          Length = 332

 Score =  310 bits (795), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 97/303 (32%), Positives = 161/303 (53%), Gaps = 9/303 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGG+SSEREVSL++G+   S L+   ++V  I++D    L+      D+A   LHG
Sbjct: 3   VGVIMGGVSSEREVSLATGREMLSHLDKNRYEVCPIEIDDKRELISKTEGIDIALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFT 117
            +GEDG VQ  L+ L IPYT S +L+S++ MDK  SK+++   G+     ++V       
Sbjct: 63  KYGEDGTVQGTLDSLGIPYTGSDVLSSSVCMDKDLSKKLLRCEGLFTADWVVVGSMQELA 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
                 +  P V+KP  GGSS+G  +++    +   + ++  W+    ++IEQ++DG E+
Sbjct: 123 AADVEGLGFPVVVKPNAGGSSIGTRIVRIQDELASAVEEALQWDRA--VMIEQFIDGEEI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC ++    L +  I  P S+F+ Y  KY    +      ++P ++ K V   A   ++A
Sbjct: 181 TCPILNGEMLPIVSIK-PNSEFFDYTSKYVEGEADE-QVIELPPELRKAVNAAAIQCYKA 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           + C   +R D +        + LE+N  PG+T  S+ P  A  AG+SF  LL  ++E + 
Sbjct: 239 LKCSVYARIDIIL--KDNIPYILEVNTLPGLTRTSLLPRSAEAAGFSFSSLLDAIIEFSL 296

Query: 298 CLR 300
             R
Sbjct: 297 TER 299


>gi|146329245|ref|YP_001209868.1| D-alanine-D-alanine ligase [Dichelobacter nodosus VCS1703A]
 gi|190359128|sp|A5EY21|DDL_DICNV RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|146232715|gb|ABQ13693.1| D-alanine-D-alanine ligase [Dichelobacter nodosus VCS1703A]
          Length = 310

 Score =  310 bits (795), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 114/298 (38%), Positives = 160/298 (53%), Gaps = 8/298 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-DRSVGLVLAHLKPDLAFNVLH 59
           +AVL GG SSERE+SL  G+A  +AL  AG     +D  D +    L       AF +LH
Sbjct: 10  VAVLYGGNSSEREISLIGGRAVHAALCAAGIDAHLLDTGDPNRIWTLKDEHFSRAFVMLH 69

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN---RF 116
           G  GEDG +QAIL+ L IPYT S +LA AL+MDK+  K+V  S G+PV   +LV    RF
Sbjct: 70  GRGGEDGEIQAILQWLGIPYTGSRVLACALAMDKVVCKKVWQSAGLPVLADVLVTPESRF 129

Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
               + L    +VIKP   GSS+G+  +K  + +        +     +++ E ++ G E
Sbjct: 130 ETLVEQLHCQDFVIKPALEGSSVGVSRVKNQEQL--AAAIPFAGGARAKIMAEPWIVGRE 187

Query: 177 LTCGVMGDASLDVTEIAV-PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
           LT G++ D  L   EI      DFY Y+ KY + N+ ++ PA I   +    + +AF A 
Sbjct: 188 LTYGIVNDTVLPAIEIVAGNDHDFYDYDAKYHAANTQYLCPAPIDAALDARCREIAFAAF 247

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           QAIG RG  R D + D  +R  + LEIN+ PGMT  S+ P  A   G  F  L+  ++
Sbjct: 248 QAIGARGWGRVDMIVDAQNR-PYLLEINLVPGMTTHSLVPMAAQQIGMDFSALVQSIL 304


>gi|227550860|ref|ZP_03980909.1| D-alanine--D-alanine ligase [Enterococcus faecium TX1330]
 gi|257887888|ref|ZP_05667541.1| D-alanine:D-alanine ligase [Enterococcus faecium 1,141,733]
 gi|257893313|ref|ZP_05672966.1| D-alanine:D-alanine ligase [Enterococcus faecium 1,231,408]
 gi|257896494|ref|ZP_05676147.1| D-alanine:D-alanine ligase [Enterococcus faecium Com12]
 gi|293379273|ref|ZP_06625419.1| D-ala D-ala ligase N-terminal domain protein [Enterococcus faecium
           PC4.1]
 gi|227179958|gb|EEI60930.1| D-alanine--D-alanine ligase [Enterococcus faecium TX1330]
 gi|257823942|gb|EEV50874.1| D-alanine:D-alanine ligase [Enterococcus faecium 1,141,733]
 gi|257829692|gb|EEV56299.1| D-alanine:D-alanine ligase [Enterococcus faecium 1,231,408]
 gi|257833059|gb|EEV59480.1| D-alanine:D-alanine ligase [Enterococcus faecium Com12]
 gi|292642069|gb|EFF60233.1| D-ala D-ala ligase N-terminal domain protein [Enterococcus faecium
           PC4.1]
          Length = 358

 Score =  310 bits (795), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 89/342 (26%), Positives = 159/342 (46%), Gaps = 51/342 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV-------------LA 47
           + +L GG S+E EVS+ S  +  +A+    ++V  + + +    V             + 
Sbjct: 3   ITLLYGGRSAEHEVSILSAFSVLNAIYYNYYQVQLVFITKEGQWVKGPLLTEKPASKDVL 62

Query: 48  HLKPD------------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
           HL  D                        + F VLHG  GEDG +Q  LE L +PY  +G
Sbjct: 63  HLSWDPSGQTEEGFTGKVINPGEIKEEGAIVFPVLHGPNGEDGTIQGFLETLNMPYVGAG 122

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLK 134
           +L SA +MDK+ +K ++ + GVP  P + V +              +  +  P  +KP  
Sbjct: 123 VLTSACAMDKIMTKYILQAAGVPQVPYVPVLKNQWKENPKKVFDQCEGSLLYPMFVKPAN 182

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI-- 192
            GSS+GI   +  + +   L  ++++ +  + ++EQ ++  E+   V+G+  +  T    
Sbjct: 183 MGSSVGITKAENREELQNAL--ATAYQYDSRAIVEQGIEAREIEVAVLGNEDVRTTLPGE 240

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            V    FY YE KY +      +PA++P ++Y++ Q  A LA+  +G  G+SR DF    
Sbjct: 241 VVKDVAFYDYEAKYINNKIEMQIPAEVPEEVYQKAQEYAKLAYTMLGGSGLSRCDFFLTN 300

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
              ++F  E+N  PG T  S++P +    G  + +L+  +++
Sbjct: 301 K-NELFLNELNSMPGFTEFSMYPLLWENMGLKYGDLIEELIQ 341


>gi|69248310|ref|ZP_00604712.1| D-alanine--D-alanine ligase [Enterococcus faecium DO]
 gi|257878840|ref|ZP_05658493.1| D-alanine:D-alanine ligase [Enterococcus faecium 1,230,933]
 gi|257881476|ref|ZP_05661129.1| D-alanine:D-alanine ligase [Enterococcus faecium 1,231,502]
 gi|257890698|ref|ZP_05670351.1| D-alanine:D-alanine ligase [Enterococcus faecium 1,231,410]
 gi|257899460|ref|ZP_05679113.1| D-alanine:D-alanine ligase [Enterococcus faecium Com15]
 gi|258615090|ref|ZP_05712860.1| D-alanine--D-alanine ligase [Enterococcus faecium DO]
 gi|261207111|ref|ZP_05921800.1| D-alanine-D-alanine ligase [Enterococcus faecium TC 6]
 gi|289567230|ref|ZP_06447615.1| D-alanine-D-alanine ligase [Enterococcus faecium D344SRF]
 gi|293560259|ref|ZP_06676756.1| D-alanine--D-alanine ligase [Enterococcus faecium E1162]
 gi|293567809|ref|ZP_06679150.1| D-alanine--D-alanine ligase [Enterococcus faecium E1071]
 gi|293573032|ref|ZP_06683974.1| D-alanine--D-alanine ligase [Enterococcus faecium E980]
 gi|294615130|ref|ZP_06695016.1| D-alanine--D-alanine ligase [Enterococcus faecium E1636]
 gi|294621793|ref|ZP_06700952.1| D-alanine--D-alanine ligase [Enterococcus faecium U0317]
 gi|314938930|ref|ZP_07846195.1| D-ala D-ala ligase [Enterococcus faecium TX0133a04]
 gi|314943519|ref|ZP_07850286.1| D-ala D-ala ligase [Enterococcus faecium TX0133C]
 gi|314948186|ref|ZP_07851580.1| D-ala D-ala ligase [Enterococcus faecium TX0082]
 gi|314951546|ref|ZP_07854592.1| D-ala D-ala ligase [Enterococcus faecium TX0133A]
 gi|314991591|ref|ZP_07857067.1| D-ala D-ala ligase [Enterococcus faecium TX0133B]
 gi|314994924|ref|ZP_07860051.1| D-ala D-ala ligase [Enterococcus faecium TX0133a01]
 gi|13346887|gb|AAB17902.2| D-alanine:D-alanine ligase [Enterococcus faecium]
 gi|33336048|gb|AAQ12892.1| D-alanine:D-alanine ligase [Enterococcus faecium]
 gi|68194454|gb|EAN08955.1| D-alanine--D-alanine ligase [Enterococcus faecium DO]
 gi|257813068|gb|EEV41826.1| D-alanine:D-alanine ligase [Enterococcus faecium 1,230,933]
 gi|257817134|gb|EEV44462.1| D-alanine:D-alanine ligase [Enterococcus faecium 1,231,502]
 gi|257827058|gb|EEV53684.1| D-alanine:D-alanine ligase [Enterococcus faecium 1,231,410]
 gi|257837372|gb|EEV62446.1| D-alanine:D-alanine ligase [Enterococcus faecium Com15]
 gi|260078739|gb|EEW66441.1| D-alanine-D-alanine ligase [Enterococcus faecium TC 6]
 gi|289160978|gb|EFD08893.1| D-alanine-D-alanine ligase [Enterococcus faecium D344SRF]
 gi|291589394|gb|EFF21201.1| D-alanine--D-alanine ligase [Enterococcus faecium E1071]
 gi|291592072|gb|EFF23695.1| D-alanine--D-alanine ligase [Enterococcus faecium E1636]
 gi|291598625|gb|EFF29683.1| D-alanine--D-alanine ligase [Enterococcus faecium U0317]
 gi|291605709|gb|EFF35146.1| D-alanine--D-alanine ligase [Enterococcus faecium E1162]
 gi|291606934|gb|EFF36314.1| D-alanine--D-alanine ligase [Enterococcus faecium E980]
 gi|313590906|gb|EFR69751.1| D-ala D-ala ligase [Enterococcus faecium TX0133a01]
 gi|313593875|gb|EFR72720.1| D-ala D-ala ligase [Enterococcus faecium TX0133B]
 gi|313596240|gb|EFR75085.1| D-ala D-ala ligase [Enterococcus faecium TX0133A]
 gi|313597891|gb|EFR76736.1| D-ala D-ala ligase [Enterococcus faecium TX0133C]
 gi|313641639|gb|EFS06219.1| D-ala D-ala ligase [Enterococcus faecium TX0133a04]
 gi|313645319|gb|EFS09899.1| D-ala D-ala ligase [Enterococcus faecium TX0082]
          Length = 358

 Score =  310 bits (795), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 89/342 (26%), Positives = 159/342 (46%), Gaps = 51/342 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV-------------LA 47
           + +L GG S+E EVS+ S  +  +A+    ++V  + + +    V             + 
Sbjct: 3   ITLLYGGRSAEHEVSILSAFSVLNAIYYNYYQVQLVFITKEGQWVKGPLLTEKPASKDVL 62

Query: 48  HLKPD------------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
           HL  D                        + F VLHG  GEDG +Q  LE L +PY  +G
Sbjct: 63  HLSWDPSGQTEEGFTGKVINPGEIKEEGAIVFPVLHGPNGEDGTIQGFLETLNMPYVGAG 122

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLK 134
           +L SA +MDK+ +K ++ + GVP  P + V +              +  +  P  +KP  
Sbjct: 123 VLTSACAMDKIMTKYILQAAGVPQVPYVPVLKNQWKENPKKVFDQCEGSLLYPMFVKPAN 182

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI-- 192
            GSS+GI   +  + +   L  ++++ +  + ++EQ ++  E+   V+G+  +  T    
Sbjct: 183 MGSSVGITKAENREELQNAL--ATAYQYDSRAIVEQGIEAREIEVAVLGNEDVRTTLPGE 240

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            V    FY YE KY +      +PA++P ++Y++ Q  A LA+  +G  G+SR DF    
Sbjct: 241 VVKDVAFYDYEAKYINNKIEMQIPAEVPEEVYQKAQEYAKLAYTMLGGSGLSRCDFFLTN 300

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
              ++F  E+N  PG T  S++P +    G  + +L+  +++
Sbjct: 301 K-NELFLNELNSMPGFTEFSMYPLLWENMGLKYGDLIEELIQ 341


>gi|28199733|ref|NP_780047.1| D-alanine--D-alanine ligase [Xylella fastidiosa Temecula1]
 gi|32129484|sp|Q87AG1|DDL_XYLFT RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|28057854|gb|AAO29696.1| D-alanine--D-alanine ligase B [Xylella fastidiosa Temecula1]
          Length = 304

 Score =  310 bits (794), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 102/302 (33%), Positives = 165/302 (54%), Gaps = 11/302 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL SG+     L   G     +D   ++   L   + D  FNVLHG
Sbjct: 5   VAVLLGGTSAEREVSLLSGRNVLEVLRMRGVDAQSVDGVPALAQALVERRFDRVFNVLHG 64

Query: 61  --NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
               GEDG+VQ +++   +PYT S +L SALSMDK+R+KQV  + G+P      ++    
Sbjct: 65  HNGGGEDGVVQGLMQAFGVPYTGSDVLGSALSMDKVRTKQVWLALGLPTPRYASLSVCAT 124

Query: 119 DSQ-----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
             +      ++  P +IKP K GSS+G+  +   + +   +  ++ +    +LL+EQ ++
Sbjct: 125 AVEVRKAVEMLGFPVIIKPAKEGSSVGVSRVFALEHLEEAVALAARYE--GELLMEQLIE 182

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           G ELT  ++ + +L    I VP+  +Y Y  KY + ++ +V P  +      E+ +LA  
Sbjct: 183 GDELTVSILDEMALPSIRI-VPQGQWYDYNAKYLAEDTQYVCP-GLDDVAEAEIAQLALA 240

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           A  ++GCRG  R D + +  S + F LE+N  PGMT  S+ P+ A+  G  F +L+  ++
Sbjct: 241 AFHSVGCRGWGRVDVMRERGSGRFFLLEVNTAPGMTTHSLVPKAASQLGMGFDDLVWRIL 300

Query: 294 ED 295
           E 
Sbjct: 301 EQ 302


>gi|319399570|gb|EFV87825.1| D-alanine--D-alanine ligase [Staphylococcus epidermidis FRI909]
          Length = 357

 Score =  310 bits (794), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 82/339 (24%), Positives = 151/339 (44%), Gaps = 46/339 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           + ++ GG S+E +VS+ + +   +A++   ++V  I +                      
Sbjct: 6   ICIVFGGKSAEHDVSILTAQNVLNAIDKERYQVDIIYITNDGEWKKKDNITQEIKNTDEL 65

Query: 49  --------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
                                  D  F +LHG  GEDG +Q + E+L+IPY  +G+LA++
Sbjct: 66  VINDVETGEISQLLSKGSLGRSYDAVFPLLHGPNGEDGTIQGLFEVLDIPYVGNGVLAAS 125

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSL 139
            SMDK+  KQ+    G+P  P I   R   +             ++ P  +KP   GSS+
Sbjct: 126 SSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYENNIIKLVNDKLTYPVFVKPANLGSSV 185

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKS 197
           GI     ++ +   + ++  ++   +L+IEQ ++  E+   V+G+   + T     V   
Sbjct: 186 GISKCNNEEELKSGIAEAFQFDR--KLVIEQGINAREIEVAVLGNDYPETTWPGEVVKDV 243

Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
            FY Y+ KY        +PA +  D+   ++ +A  A +A  C G+ R+DF       ++
Sbjct: 244 AFYDYKSKYKDGKIKLDIPADLDQDVQMTLRNMALEAFKATDCSGLVRADFFVT-DDNQI 302

Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +  E N  PG T  S++P +    G S+ +L+  +++ A
Sbjct: 303 YINETNAMPGFTAYSMYPNLWKNMGLSYPDLIAKLIDLA 341


>gi|27381549|ref|NP_773078.1| D-alanine--D-alanine ligase A [Bradyrhizobium japonicum USDA 110]
 gi|39931119|sp|Q89GA7|DDLA_BRAJA RecName: Full=D-alanine--D-alanine ligase A; AltName:
           Full=D-Ala-D-Ala ligase A; AltName: Full=D-alanylalanine
           synthase A
 gi|27354717|dbj|BAC51703.1| D-alanine--D-alanine ligase A [Bradyrhizobium japonicum USDA 110]
          Length = 373

 Score =  310 bits (794), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 99/353 (28%), Positives = 160/353 (45%), Gaps = 59/353 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50
           + VL GG S E EVSL S  +    L+   F+V  + +D++       L+          
Sbjct: 7   VVVLYGGRSGEHEVSLKSAASVFRHLDRTRFEVIPVSIDKTGRWQWNDLRSLDQAHAAAL 66

Query: 51  ---------------------------------PDLAFNVLHGNFGEDGLVQAILELLEI 77
                                             D+ F V+HG   EDG VQ +LEL ++
Sbjct: 67  PILPDAPEMRLARGPDGRGVLVPITQGAAAPIAIDVVFPVIHGPLCEDGTVQGLLELADV 126

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---------ISPPY 128
            Y  SG+LASA+SMDK  +K++    G+PV P  ++ R       +         +S P 
Sbjct: 127 AYVGSGVLASAVSMDKDVAKRLAEFAGIPVAPYRVLTRKAFVQDRVSSLAKAVEGLSLPV 186

Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD 188
            +KP   GSS+GI  +K   ++   L    ++ +  ++L++Q +D  E+   V+ D +L 
Sbjct: 187 FVKPCNMGSSVGIHKVKTQDALEAALDD--AFRYDVKVLVQQGIDAREIEVAVLEDETLF 244

Query: 189 VTEIAV----PKSDFYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
            +  +        +FYSYE KY   +   V  PA++     + V+ LA     A+ C G 
Sbjct: 245 ASLASELNPNAHHEFYSYEAKYLDPDGARVDLPARLDAAQMERVRSLATRVFAALECSGF 304

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +R DF  D  + +  + EIN  PG T +S++P+M   +G  + ELL  +V+ A
Sbjct: 305 ARVDFFLDRKTGEFCFNEINTLPGFTSISMYPKMMEASGVPYGELLSRLVDLA 357


>gi|323490561|ref|ZP_08095767.1| D-alanine--D-alanine ligase B [Planococcus donghaensis MPA1U2]
 gi|323395827|gb|EGA88667.1| D-alanine--D-alanine ligase B [Planococcus donghaensis MPA1U2]
          Length = 356

 Score =  310 bits (794), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 93/340 (27%), Positives = 158/340 (46%), Gaps = 47/340 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS------------------V 42
           + +L GG S+E EVSLS+  A   A++   ++V  I + +                   +
Sbjct: 5   IGLLYGGKSAEHEVSLSTALAVTKAIDFNAYEVYPIYITQDGEWRKGQSLEEPATTIEQL 64

Query: 43  GLVLAHLKP---------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87
            L     KP               D+   +LHG  GEDG VQ +LE+L IPY  +G+LAS
Sbjct: 65  QLTEGTGKPNDISSFLPTQTSEALDVIVPLLHGPNGEDGTVQGLLEVLNIPYVGNGVLAS 124

Query: 88  ALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSS 138
           +  MDK+  KQ+    G+   P +   R   D+         +  +  P  +KP   GSS
Sbjct: 125 SAGMDKVVMKQLFKQAGLEQTPYVYFIRRDWDNNQGFWLDKIEAELVWPVFVKPANLGSS 184

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--DVTEIAVPK 196
           +GI      + + + + ++  ++   +++IEQ V   E+  GV+G+      V     P 
Sbjct: 185 VGISKADNREELIVAVKEALKFDR--KIVIEQGVVAREIEVGVLGNDEPACSVAGEIKPL 242

Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256
             FY Y+ KY   N+  ++PA++   +Y ++   A  A + + C G+ R+DF     + +
Sbjct: 243 KAFYDYQAKYKDGNTAMIIPAELDEAVYAKLVVDAKKAFKILDCSGLVRADFFVTA-NNE 301

Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +   E+N  PG TP S+FP +  + G  + EL+  ++  A
Sbjct: 302 ILINEVNTLPGFTPFSMFPLLWEHTGVPYPELIERLITLA 341


>gi|94270595|ref|ZP_01291776.1| D-alanine--D-alanine ligase [delta proteobacterium MLMS-1]
 gi|93450744|gb|EAT01808.1| D-alanine--D-alanine ligase [delta proteobacterium MLMS-1]
          Length = 314

 Score =  310 bits (794), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 107/295 (36%), Positives = 166/295 (56%), Gaps = 13/295 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLA-HLKPDLAFNVLH 59
           +A+L GG S+EREVSLS       AL  + +++ + D    +  + A     D+AF +LH
Sbjct: 9   VALLAGGKSAEREVSLSGAAGVEKALAGSRYRLRRYDPATDLPRLAADAASIDVAFVLLH 68

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G  GEDG +Q  L+LL IPY  SG+L SAL+MDK  +K++    G+ V    +     + 
Sbjct: 69  GTLGEDGTIQGFLDLLGIPYQGSGVLGSALAMDKDLAKELYRLAGLRVPAWEMARPADIA 128

Query: 120 SQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175
                  L+SPP V+KP++ GSSLG+ ++  ++ +   L   +++ H DQ+++EQ+V G 
Sbjct: 129 EPRRLLALLSPPLVVKPVRQGSSLGMSIVDAEEELAPAL--ETAFAHDDQVMVEQFVAGR 186

Query: 176 ELTCGVMGDA---SLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           E+T GV+G+    +L V EI   +   F+ Y+ KY    S  V PA++P  +  +VQ  A
Sbjct: 187 EVTGGVLGNDQLTALPVVEIIPGEQYRFFDYQAKYQPGASREVCPAELPPAVTAQVQEWA 246

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
             AH+ +  +G SR+D +       ++ LE N  PGMTP S+FP+ AA  G  F 
Sbjct: 247 CRAHRVLRLKGYSRTDMILAADG--LYVLETNTIPGMTPTSLFPQAAAAHGLDFG 299


>gi|213970839|ref|ZP_03398962.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. tomato T1]
 gi|301384525|ref|ZP_07232943.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. tomato
           Max13]
 gi|302060687|ref|ZP_07252228.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. tomato K40]
 gi|302130483|ref|ZP_07256473.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. tomato
           NCPPB 1108]
 gi|213924362|gb|EEB57934.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. tomato T1]
          Length = 363

 Score =  310 bits (794), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 99/354 (27%), Positives = 174/354 (49%), Gaps = 57/354 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR--------SVGLVLAHLKP- 51
           +A++ GG SSE EVSL S +   +A++   + ++ I VD+            +L    P 
Sbjct: 5   VAIVFGGQSSEHEVSLQSARNVINAIDRESYALTLIGVDKLGRWLRFDEADYLLNANDPA 64

Query: 52  ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
                                             D+ F ++HG FGEDG +Q +L +L +
Sbjct: 65  RIKLSGSGKQLSLLPGSVGGQFVEVESGKPLAAIDVVFPLIHGAFGEDGALQGLLRMLAV 124

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT----MDSQHLISPPYVIKPL 133
           P+  + +LASA  MDK  +K+++   G+ V P +++NR        +   +S P  +KP 
Sbjct: 125 PFVGADVLASAACMDKDVTKRLLRDAGIAVAPFMVLNRGESLSFAQAAAQLSLPMFVKPA 184

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI- 192
             GSS+G+  +  +      L     ++H  +LLIEQ + G E+ C V+G+    V+   
Sbjct: 185 NQGSSVGVSKVSDEAGFAAALALGFEFDH--KLLIEQGIVGREVECAVLGNDEPQVSVCG 242

Query: 193 -AVPKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
             V   +FY+Y+ KY + +   + +PA++P D+  +V+ +A  A++ +GC G+SR DF  
Sbjct: 243 EVVANDEFYAYDTKYLNGDQARIAIPAELPADLSDQVRDVALQAYKVLGCAGLSRVDFFV 302

Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV----EDASCLR 300
               R++   E+N  PG T +S++P++   +G S+ EL+  ++    E A   R
Sbjct: 303 TGA-REIIINEVNTLPGFTSISMYPKLWQASGLSYAELIHRLIVLALERADEAR 355


>gi|291294737|ref|YP_003506135.1| D-alanine/D-alanine ligase [Meiothermus ruber DSM 1279]
 gi|290469696|gb|ADD27115.1| D-alanine/D-alanine ligase [Meiothermus ruber DSM 1279]
          Length = 322

 Score =  310 bits (794), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 102/318 (32%), Positives = 162/318 (50%), Gaps = 27/318 (8%)

Query: 3   VLMGGISSEREVSLSSGKACASA-----------------LEDAGFKVSQIDV----DRS 41
           +L GG   E EVSLSS +   +A                 L +  ++  +  V       
Sbjct: 5   LLAGGPPGEHEVSLSSARGVLAAMPHPTELVVIAKDGRWLLGEDAYEALRAGVAEQGTHP 64

Query: 42  VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
               +     D+ F +LHG  GEDG++Q  L+LL  PY  +G+ +SAL MDK   K+V+ 
Sbjct: 65  FPPPVPWQHYDVVFPLLHGPLGEDGVIQGFLQLLRRPYVGAGVASSALCMDKDLCKRVLR 124

Query: 102 SCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN 161
             G+PV P + + +     Q    PPY +KP   GSS+GI  +K DQ     L ++ +W 
Sbjct: 125 QAGIPVVPWVTLYKGEPTPQPPFPPPYFVKPANTGSSVGISKVKADQDATRALAEAFAW- 183

Query: 162 HGDQLLIEQYVDG-IELTCGVMGD--ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
             D++L+EQ ++G  EL   ++G+  A   V      +S+FY YE KY+   +   LPA 
Sbjct: 184 -DDKVLVEQGIEGVRELEVALLGNIHAEASVVGEITYQSEFYDYETKYTEGKAQLHLPAP 242

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278
           IP ++  E++  A  A++ +G RG++R DF   P   +++  E N  PG TP S++P++ 
Sbjct: 243 IPPELSDEIRATALEAYRILGVRGMARVDFFLSPQ-GELYLNEFNTIPGFTPTSMYPKLW 301

Query: 279 AYAGYSFRELLLWMVEDA 296
              G ++ +LL  +V  A
Sbjct: 302 QATGLAYPDLLDRLVRLA 319


>gi|167904388|ref|ZP_02491593.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei NCTC
           13177]
 gi|237813917|ref|YP_002898368.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB)
           (D-Ala-D-Ala ligase B) [Burkholderia pseudomallei
           MSHR346]
 gi|254180548|ref|ZP_04887146.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei 1655]
 gi|184211087|gb|EDU08130.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei 1655]
 gi|237505584|gb|ACQ97902.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB)
           (D-Ala-D-Ala ligase B) [Burkholderia pseudomallei
           MSHR346]
          Length = 312

 Score =  310 bits (794), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 97/300 (32%), Positives = 151/300 (50%), Gaps = 11/300 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SG+     L DAG      D  +     L       AFN LHG
Sbjct: 12  VAVLLGGDSAEREVSLNSGRLVLQGLRDAGIDAHPFDPAQRPLAALKDEGFVRAFNALHG 71

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GE+G +Q  L+   I YT SG+L SAL +DK R+K V    G+P  P   V R    +
Sbjct: 72  GYGENGQIQGALDFYGIRYTGSGVLGSALGLDKFRTKLVWQQTGIPTPPFETVMRGDDYA 131

Query: 121 Q------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD- 173
                    +  P  +KP   GSS+ +  +K   ++P       +  H   +++E+ ++ 
Sbjct: 132 ARAQAIVAKLGVPLFVKPASEGSSVAVEKVKSADALPA--ALEEAAKHDKIVIVEKSIEG 189

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           G E T  +  D  L +  I VP  +FY Y  KY + ++ +++P  +      E +R+A  
Sbjct: 190 GGEYTACIAADLDLPLIRI-VPAGEFYDYHAKYIANDTQYLIPCGLDAAKEAEFKRIARR 248

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           A   +GC    R+DF+ D      ++LE+N  PGMT  S+ P+ A   G  + EL++ ++
Sbjct: 249 AFDVLGCTDWGRADFMLDAAGN-PYFLEVNTAPGMTDHSLPPKAARAVGIGYSELVVKVL 307


>gi|327438466|dbj|BAK14831.1| D-alanine-D-alanine ligase [Solibacillus silvestris StLB046]
          Length = 357

 Score =  310 bits (794), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 91/341 (26%), Positives = 154/341 (45%), Gaps = 48/341 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLA------------- 47
           + +L GG S+E EVSLS+ KA   AL+   F V  I +       +              
Sbjct: 5   IGLLYGGKSAEHEVSLSTAKAVTQALDFNEFDVFPIFITLKGEWRVGPQLTEPAQTIEQL 64

Query: 48  ---------------------HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
                                    D+ F +LHG  GEDG VQ  LE+L IPY  +G+L 
Sbjct: 65  QFTTASDHSENNITQFIAKHMESPFDVIFPLLHGTNGEDGTVQGFLEVLNIPYVGNGVLG 124

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---------ISPPYVIKPLKGGS 137
           SA  MDK+  KQ+     +P  P     R   + +           +  P  +KP   GS
Sbjct: 125 SAAGMDKVVMKQLFEMAKLPQLPYEYFIRSEWEREKEAWIKRCEQSLGYPMFVKPANLGS 184

Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV--P 195
           S+GI        +   +    +  +  +++IEQ V   E+   V+G+ + +V+      P
Sbjct: 185 SVGISKATNAAELEKAV--QFALQYDRKIVIEQGVTAREIELAVLGNDTPNVSVAGEIKP 242

Query: 196 KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255
            ++FY Y+ KY   ++  ++PA +  D+Y  +  +A  A +AI   G+ R+DF     + 
Sbjct: 243 MTEFYDYDSKYKDGSTALIIPAPLQNDVYTNLVDMAKRAFKAIDGAGLVRADFFVTE-NN 301

Query: 256 KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +++  E+N  PG TPVS++P +  +   ++ +L+  +++ A
Sbjct: 302 EIYINEVNTMPGFTPVSMYPLLWQHTDVTYPQLIKELIDFA 342


>gi|315445128|ref|YP_004078007.1| D-alanine--D-alanine ligase [Mycobacterium sp. Spyr1]
 gi|315263431|gb|ADU00173.1| D-alanine--D-alanine ligase [Mycobacterium sp. Spyr1]
          Length = 367

 Score =  310 bits (794), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 103/360 (28%), Positives = 165/360 (45%), Gaps = 65/360 (18%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +AV+ GG SSE  +S  S  +    L+   F+V+ + +      VL   +P         
Sbjct: 7   VAVVYGGRSSEHAISCVSAGSILRNLDPDRFEVTAVGITPEGSWVLTEGRPETLAITDGK 66

Query: 52  --------------------------------------DLAFNVLHGNFGEDGLVQAILE 73
                                                 D+ F VLHG +GEDG +Q +LE
Sbjct: 67  LPGVTGDSGTALTLTADPARRGQLVSLGEAAGEVLASADVVFPVLHGPYGEDGTIQGLLE 126

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT----MDSQHLISPPYV 129
           L  +PY  +G+LASA  MDK  +K++++S G+PV   +++        +  +  +  P  
Sbjct: 127 LAGVPYVGAGVLASAAGMDKEFTKKLLASAGLPVGDHVVLRARDSTLSLQDRERLGLPVF 186

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG--DASL 187
           +KP +GGSS+G+  +     +P  +    +  H  +++IE  V G EL CGV+   D  L
Sbjct: 187 VKPSRGGSSIGVSRVTAWDELPAAI--ELARRHDPKVIIEAAVPGRELECGVLEFPDGHL 244

Query: 188 DVT---EIAVP-----KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
           + +   EI V      +  FY +E KY    +   +PAK+  D+ + ++ L+  A  AI 
Sbjct: 245 EASTLGEIRVEGVRGREDGFYDFETKYLDDGAELDVPAKVDDDVAEAIRALSLRAFTAID 304

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
           C+G++R DF            EIN  PG T +S++P M A +G  ++ LL  MVE A   
Sbjct: 305 CQGLARVDFFLT--DDGPVINEINTMPGFTTISMYPRMWAASGVDYQTLLATMVETALAR 362


>gi|311742955|ref|ZP_07716763.1| D-alanine-D-alanine ligase [Aeromicrobium marinum DSM 15272]
 gi|311313635|gb|EFQ83544.1| D-alanine-D-alanine ligase [Aeromicrobium marinum DSM 15272]
          Length = 356

 Score =  310 bits (794), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 94/339 (27%), Positives = 161/339 (47%), Gaps = 47/339 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50
           +AV+ GG SSE  VS  + +   +AL+   + V  I +      V    +          
Sbjct: 14  LAVVFGGRSSEHGVSCLTAREVLAALDPDRYDVRPIGITTDGAWVEETARWDDLAPGTLP 73

Query: 51  ----------------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKM 94
                            D  F +LHG +GEDG VQ +LE+ +I Y  +G+LASA+SMDK 
Sbjct: 74  AVRADGPVFAWERLAEFDAVFPLLHGPWGEDGTVQGLLEMADIRYVGAGVLASAVSMDKP 133

Query: 95  RSKQVVSSCGVPVCPSILVNRFTMDSQ--------HLISPPYVIKPLKGGSSLGIIVIKK 146
            +K V S+ G+P  P + +  +  + +          +  P  +KP + GSS G+ +++ 
Sbjct: 134 FTKTVFSAAGLPQIPYVTIRPWEWNRERSRVEARIRALGLPVFVKPARAGSSSGVAMVES 193

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDA--------SLDVTEIAVPKS 197
              +   ++ + ++    ++++E +  G  EL CGV+             ++T  A    
Sbjct: 194 WDDLDAAVVAARAF--DPKVIVEAFARGKRELECGVLQGPDGRPVASVVGEITVAAESDH 251

Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
           DFY +E KY    S +++PA IP+ + + ++  A  A +A+GC G++R DF        +
Sbjct: 252 DFYDFEAKYLDGTSVNLVPADIPVTLSERIRTYAVQAFEAVGCEGLARVDFFLT--DDGL 309

Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              EIN  PG TP S+FP +   +G  + +L+  +V  A
Sbjct: 310 VVNEINTMPGFTPFSMFPLLWEASGVRYEDLVDRLVRLA 348


>gi|282861341|ref|ZP_06270406.1| D-alanine/D-alanine ligase [Streptomyces sp. ACTE]
 gi|282563999|gb|EFB69536.1| D-alanine/D-alanine ligase [Streptomyces sp. ACTE]
          Length = 401

 Score =  310 bits (794), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 106/363 (29%), Positives = 158/363 (43%), Gaps = 71/363 (19%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +AV+ GG SSE  +S+ +  A  SAL+   + V  I + R     L    P         
Sbjct: 35  VAVVFGGRSSEHGISVVTAGAVMSALDRTKYDVLPIGITRDGRWALTADDPARMAISDRQ 94

Query: 52  -----------------------------------------DLAFNVLHGNFGEDGLVQA 70
                                                    D+ F +LHG +GEDG +Q 
Sbjct: 95  VPDVDRLAQSAEGAVTLSVDPGNRDVVVGEPGAVPTVLGEVDVVFPMLHGPYGEDGTLQG 154

Query: 71  ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI------ 124
            LEL  +PY  +G+LASA+  DK   K+V +S G+PV P  +V     +S          
Sbjct: 155 FLELSGVPYVGAGVLASAVGQDKEYMKRVFTSFGLPVGPYEVVRPREWESDRPAARKRIM 214

Query: 125 ------SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                   P  +KP +GGSS+GI  +  D    LD     +  H  + L+E  + G E+ 
Sbjct: 215 EFAAEHGWPLFVKPARGGSSMGITKV--DDPSGLDEAIEEARRHDPKFLVESLLRGREIE 272

Query: 179 CGVMG-----DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           CGV+       AS+      V   DFY +E KY   ++  ++PA +  +   EV+RLA  
Sbjct: 273 CGVLEFEDGPRASVPAEIPPVTAHDFYDFEAKY-IDSAAGLVPAPLTEEQTAEVRRLAVD 331

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           A +A  C G+ R+DF            EIN  PG TP+S++P M   +G S+ EL+  ++
Sbjct: 332 AFEAASCEGLVRADFFLTE-DGTFVINEINTMPGFTPISMYPRMWQESGVSYPELVDRLI 390

Query: 294 EDA 296
           + A
Sbjct: 391 QAA 393


>gi|90410346|ref|ZP_01218362.1| hypothetical D-alanine-D-alanine ligase B [Photobacterium profundum
           3TCK]
 gi|90328587|gb|EAS44871.1| hypothetical D-alanine-D-alanine ligase B [Photobacterium profundum
           3TCK]
          Length = 304

 Score =  310 bits (794), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 103/301 (34%), Positives = 170/301 (56%), Gaps = 10/301 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VL+GG SSER VSL SG+   +A+E  G +   ID       ++   K D  F  LHG
Sbjct: 3   IGVLLGGESSERSVSLKSGECVVNAIESLGHEAISIDPKHIDVTLMGFFKLDKVFIALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF---T 117
             GE G VQA+L+LL+IPYT SG LASA+S++K+ SK++  S  +     + +++     
Sbjct: 63  GIGESGHVQALLDLLKIPYTGSGTLASAMSLNKLNSKEIWQSNSLKSADWVTLHKHAPMD 122

Query: 118 MDSQHLISP--PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175
                L+S   P V+KP+  G S+G+  +  +  +   ++  +++ + D +LIE ++ G 
Sbjct: 123 DIKAQLLSVVCPVVVKPISQGCSIGVSKVDNNADLLEAVI--TAFEYDDDILIESFIAGR 180

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
           E TC V+   +L + +I      F+ Y+ K+ S ++T+  P+ +  +  +++Q LA  A+
Sbjct: 181 EYTCAVLNGEALPIVQIR--SEQFFDYDAKFGSQSATYHCPSDLTSEQERDMQVLALNAY 238

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
            A+GCRG  R D + D     VF +E+N  PGMT  S+FP  A  AG SF +++  +++ 
Sbjct: 239 NALGCRGWGRVDTILDES-GDVFLIEMNTIPGMTTRSVFPMAAKEAGLSFEQVISSLLDS 297

Query: 296 A 296
           A
Sbjct: 298 A 298


>gi|319648705|ref|ZP_08002916.1| D-alanine-D-alanine ligase [Bacillus sp. BT1B_CT2]
 gi|317389124|gb|EFV69940.1| D-alanine-D-alanine ligase [Bacillus sp. BT1B_CT2]
          Length = 355

 Score =  310 bits (794), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 92/343 (26%), Positives = 149/343 (43%), Gaps = 53/343 (15%)

Query: 4   LMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV------------------ 45
           + GG S+E  VSL +  A   AL+   F +  I +      V                  
Sbjct: 2   VYGGKSAEHNVSLQTALAVTKALDTEKFDIHPIYITEKGEWVRGPQLTEPVSNVKMLQFE 61

Query: 46  ---------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84
                                      D+ F +LHG  GEDG +Q +LELL +PY  +G+
Sbjct: 62  QTGQTFSPAVLNRDMFPGEADAKEDSIDVVFPLLHGPNGEDGTIQGMLELLNVPYVGNGV 121

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPLKG 135
           LAS+  MDK+  K + +  G+     +   + T            +  +  P  +KP   
Sbjct: 122 LASSAGMDKVVMKHLFAQAGLDQAKYVSFLKKTWSQSKEECYAQVEGELGYPCFVKPANL 181

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--DVTEIA 193
           GSS+GI   +  + +        ++ +  ++++E+ V G E+  GV+G+      V    
Sbjct: 182 GSSVGISKCRSREELDQAF--ELAFQYDRKIVVEEGVIGREIELGVLGNDEPVCSVAGEI 239

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
            PK DFY Y+ KY   ++  ++PA +  D Y+ ++ +A  A QAI   G+ R+DF     
Sbjct: 240 APKKDFYDYKAKYEDGDTDLIIPASLTEDEYETMRSMAVKAFQAIDGSGLVRADFFLTNE 299

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            R V   E+N  PG TP S+FP +   +G  + EL+  +V  A
Sbjct: 300 GR-VLINEVNTMPGFTPFSMFPLLWKQSGVEYAELIEKLVALA 341


>gi|57867614|ref|YP_189255.1| D-alanyl-alanine synthetase A [Staphylococcus epidermidis RP62A]
 gi|282876510|ref|ZP_06285376.1| D-ala D-ala ligase N-terminal domain protein [Staphylococcus
           epidermidis SK135]
 gi|71153333|sp|Q5HMD8|DDL_STAEQ RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|57638272|gb|AAW55060.1| D-alanine--D-alanine ligase [Staphylococcus epidermidis RP62A]
 gi|281294762|gb|EFA87290.1| D-ala D-ala ligase N-terminal domain protein [Staphylococcus
           epidermidis SK135]
 gi|329735636|gb|EGG71919.1| D-ala D-ala ligase N-terminal domain protein [Staphylococcus
           epidermidis VCU028]
          Length = 357

 Score =  310 bits (794), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 82/339 (24%), Positives = 151/339 (44%), Gaps = 46/339 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           + ++ GG S+E +VS+ + +   +A++   ++V  I +                      
Sbjct: 6   ICIVFGGKSAEHDVSILTAQNVLNAIDKERYQVDIIYITNDGEWKKKDNITQEIKNTDEL 65

Query: 49  --------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
                                  D  F +LHG  GEDG +Q + E+L+IPY  +G+LA++
Sbjct: 66  VINDVETGEISQLLSKGSLGKSYDAVFPLLHGPNGEDGTIQGLFEVLDIPYVGNGVLAAS 125

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSL 139
            SMDK+  KQ+    G+P  P I   R   +             ++ P  +KP   GSS+
Sbjct: 126 SSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYENNIIKLVNDKLTYPVFVKPANLGSSV 185

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKS 197
           GI     ++ +   + ++  ++   +L+IEQ ++  E+   V+G+   + T     V   
Sbjct: 186 GISKCNNEEELKSGIAEAFQFDR--KLVIEQGINAREIEVAVLGNDYPETTWPGEVVKDV 243

Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
            FY Y+ KY        +PA +  D+   ++ +A  A +A  C G+ R+DF       ++
Sbjct: 244 AFYDYKSKYKDGKIRLDIPADLDQDVQMTLRNMALEAFKATDCSGLVRADFFVT-DDNQI 302

Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +  E N  PG T  S++P +    G S+ +L+  +++ A
Sbjct: 303 YINETNAMPGFTAYSMYPNLWKNMGLSYPDLIAKLIDLA 341


>gi|325518026|gb|EGC97834.1| D-alanine--D-alanine ligase [Burkholderia sp. TJI49]
          Length = 313

 Score =  310 bits (794), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 100/300 (33%), Positives = 154/300 (51%), Gaps = 11/300 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL+SG+     L DAG      D        L     + AF  LHG
Sbjct: 12  VAVLFGGESAEREVSLTSGRLVLQGLRDAGIDAHPFDPAERPLAALKDEGFERAFIALHG 71

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118
            +GE+G +Q  L+   I YT SG+L SAL +DK R+K V    GVP  P   V R     
Sbjct: 72  GYGENGQIQGALDFYGIRYTGSGVLGSALGLDKFRTKLVWQQTGVPTPPFETVLRGDDYA 131

Query: 119 ----DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD- 173
               +    +  P  +KP   GSS+ ++ +K      L    + +  H   +++E+ ++ 
Sbjct: 132 ARATEIVAKLGLPLFVKPASEGSSVAVLKVKTA--DALPAALAEAATHDRIVIVEKSIEG 189

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           G E T  + GD  L + +I VP  +FY Y  KY + ++ +++P  +P     E++R+A  
Sbjct: 190 GGEYTACIAGDLDLPLIKI-VPAGEFYDYHAKYVADDTQYLIPCGLPAVQEAELKRIARR 248

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           A   +GC    R+DF+ D      ++LE+N  PGMT  S+ P+ A   G S+ EL++ ++
Sbjct: 249 AFDVLGCTDWGRADFMLDAAGNA-YFLEVNTAPGMTDHSLPPKAARSVGISYSELVVKVL 307


>gi|159029500|emb|CAO87648.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 352

 Score =  310 bits (794), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 95/343 (27%), Positives = 159/343 (46%), Gaps = 49/343 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALED----AGFKVSQIDVDRSVGL--------VLAH 48
           + +L GG S E EVS++S ++   A         + V    +D++           +L  
Sbjct: 6   VGLLFGGRSGEHEVSINSARSILQAFNYPENLDKYAVIPFYIDKNGCWHSAATARQILTS 65

Query: 49  LKP---------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87
            +P                     ++ F +LHG  GEDG +Q +L L+ + +  SG+L S
Sbjct: 66  GQPLAIESDIKVNIWQFPPEVSEIEVWFPILHGPNGEDGTLQGLLTLMRVAFVGSGVLGS 125

Query: 88  ALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------------QHLISPPYVIKPLKG 135
            L MDK+  K   ++ G+P      + R  + S               I  P  IKP   
Sbjct: 126 CLGMDKIAMKTAFAAAGLPQVKYKAITRSQVWSNPCVFPQLCDQIAEEIGYPCFIKPANL 185

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195
           GSS+GI   +  Q +   L  ++S++   ++++E  V   E+ C V+G+ +   + +   
Sbjct: 186 GSSVGISKARNQQELEAALDSAASYDR--RIIVEAGVTAREIECAVLGNDNPQASLVGEI 243

Query: 196 --KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
              SDFY YE KY+   S+ V+PA IP  I  +V+ +A  A +A+   G+SR DF +   
Sbjct: 244 TFDSDFYDYETKYTDGRSSMVIPANIPDKIADQVREMAVEAFKAVDAAGLSRVDFFYVEK 303

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           + +V   EIN  PG T  S++P++    G  F +L+  +V+ A
Sbjct: 304 TGEVLINEINTLPGFTNFSMYPQLWKATGLEFDQLVDKLVQLA 346


>gi|212711834|ref|ZP_03319962.1| hypothetical protein PROVALCAL_02909 [Providencia alcalifaciens DSM
           30120]
 gi|212685356|gb|EEB44884.1| hypothetical protein PROVALCAL_02909 [Providencia alcalifaciens DSM
           30120]
          Length = 367

 Score =  309 bits (793), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 93/346 (26%), Positives = 155/346 (44%), Gaps = 55/346 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44
           + V+ GG S+E EVSL S K   + L+ + F V  I +++                    
Sbjct: 6   VGVIFGGKSTEHEVSLQSAKNIINGLDRSKFDVCLIGINKEGQWHEYDEANFLLHGDDPA 65

Query: 45  -----------------------VLAHLKP----DLAFNVLHGNFGEDGLVQAILELLEI 77
                                   L   KP    D+ F ++HGN GEDG +Q +L +  +
Sbjct: 66  HIALNTPKRSIAIVPGKQSEQFISLEDAKPLPQIDVIFPIVHGNLGEDGSLQGLLRMANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ------HLISPPYVIK 131
           P+   G+L S+  MDK  +K+++   G+ + P I + +   D          +  P  IK
Sbjct: 126 PFVGPGVLGSSACMDKDVTKRLLRDAGLHIAPFITILKSGRDEISYSATVEKLGLPLFIK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+GI  +  +      L    ++    ++LIE  V G E+ C V+G+     + 
Sbjct: 186 PANQGSSVGISKVNNESEFNAAL--DFAFLFDVKVLIESAVKGREIECAVLGNEHPLASP 243

Query: 192 IA--VPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               V    FY+Y  KY     ++ V PA +  DI  +++ +A  A+QA+ C G+SR D 
Sbjct: 244 CGEIVLHDSFYAYHTKYIDENGASVVAPADLEHDISDKIRAIALEAYQALNCSGMSRVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
                +  V   EIN  PG T +S++P++    G +++EL+  ++E
Sbjct: 304 FLTE-NNDVVINEINTLPGFTNISMYPKLWQQGGMTYQELISRLIE 348


>gi|28871324|ref|NP_793943.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|39931110|sp|Q87XJ6|DDLA_PSESM RecName: Full=D-alanine--D-alanine ligase A; AltName:
           Full=D-Ala-D-Ala ligase A; AltName: Full=D-alanylalanine
           synthetase A
 gi|28854575|gb|AAO57638.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|331015641|gb|EGH95697.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. lachrymans
           str. M302278PT]
          Length = 363

 Score =  309 bits (793), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 99/354 (27%), Positives = 173/354 (48%), Gaps = 57/354 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR--------SVGLVLAHLKP- 51
           +A++ GG SSE EVSL S +   +A++   + ++ I VD+            +L    P 
Sbjct: 5   VAIVFGGQSSEHEVSLQSARNVINAIDRESYALTLIGVDKLGRWLRFDEADYLLNANDPA 64

Query: 52  ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
                                             D+ F ++HG FGEDG +Q +L +L +
Sbjct: 65  RIKLSGSGKQLSLLPGSVGGQFVEVESGKPLAAIDVVFPLIHGAFGEDGALQGLLRMLAV 124

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT----MDSQHLISPPYVIKPL 133
           P+  + +LASA  MDK  +K+++   G+ V P +++NR        +   +S P  +KP 
Sbjct: 125 PFVGADVLASAACMDKDVTKRLLRDAGIAVAPFMVLNRGESLSFAQAAAQLSLPMFVKPA 184

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI- 192
             GSS+G+  +  +      L     ++H  +LLIEQ + G E+ C V+G+    V+   
Sbjct: 185 NQGSSVGVSKVSDEAGFAAALALGFEFDH--KLLIEQGIVGREVECAVLGNDEAQVSVCG 242

Query: 193 -AVPKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
             V   +FY+Y+ KY + +   + +PA++P D+  +V+ +A  A++ +GC G+SR DF  
Sbjct: 243 EVVANDEFYAYDTKYLNGDQARIAIPAELPADLSDQVRDVALQAYKVLGCAGLSRVDFFV 302

Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV----EDASCLR 300
               R++   E+N  PG T +S++P++    G S+ EL+  ++    E A   R
Sbjct: 303 TEA-REIIINEVNTLPGFTSISMYPKLWQATGLSYAELIHRLIVLALERADEAR 355


>gi|242241490|ref|ZP_04795935.1| D-alanyl-alanine synthetase A [Staphylococcus epidermidis W23144]
 gi|242235033|gb|EES37344.1| D-alanyl-alanine synthetase A [Staphylococcus epidermidis W23144]
          Length = 362

 Score =  309 bits (793), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 82/339 (24%), Positives = 151/339 (44%), Gaps = 46/339 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           + ++ GG S+E +VS+ + +   +A++   ++V  I +                      
Sbjct: 11  ICIVFGGKSAEHDVSILTAQNVLNAIDKERYQVDIIYITNDGEWKKKDNITQEIKNTDEL 70

Query: 49  --------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
                                  D  F +LHG  GEDG +Q + E+L+IPY  +G+LA++
Sbjct: 71  VINDVETGEISQLLSKGSLGRSYDAVFPLLHGPNGEDGTIQGLFEVLDIPYVGNGVLAAS 130

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSL 139
            SMDK+  KQ+    G+P  P I   R   +             ++ P  +KP   GSS+
Sbjct: 131 SSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYENNIIKLVNDKLTYPVFVKPANLGSSV 190

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKS 197
           GI     ++ +   + ++  ++   +L+IEQ ++  E+   V+G+   + T     V   
Sbjct: 191 GISKCNNEEELKSGIAEAFQFDR--KLVIEQGINAREIEVAVLGNDYPETTWPGEVVKDV 248

Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
            FY Y+ KY        +PA +  D+   ++ +A  A +A  C G+ R+DF       ++
Sbjct: 249 AFYDYKSKYKDGKIKLDIPADLDQDVQMTLRNMALEAFKATDCSGLVRADFFVT-DDNQI 307

Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +  E N  PG T  S++P +    G S+ +L+  +++ A
Sbjct: 308 YINETNAMPGFTAYSMYPNLWKNMGLSYPDLIAKLIDLA 346


>gi|261855073|ref|YP_003262356.1| D-alanine/D-alanine ligase [Halothiobacillus neapolitanus c2]
 gi|261835542|gb|ACX95309.1| D-alanine/D-alanine ligase [Halothiobacillus neapolitanus c2]
          Length = 324

 Score =  309 bits (793), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 97/297 (32%), Positives = 160/297 (53%), Gaps = 11/297 (3%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL----AHLKPDLAFNVL 58
           +L+GG SSER +SL SG+    AL+ AG  V+ +DV R     L         D AF +L
Sbjct: 12  LLLGGWSSERVISLKSGETVLGALQRAGIDVTAMDVRRDFLPELLAAHQAKPFDRAFIIL 71

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
           HG  GEDG +QA+LELL IPYT + +  SA+ MDK+  K++    G+P  P  +V     
Sbjct: 72  HGRGGEDGQIQAVLELLGIPYTGTSMGGSAIGMDKLACKRIWRGEGLPTPPWAVVATEIE 131

Query: 119 DSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
             + L  +  P ++KP+  GSS+G+  + +   +     +++ +    Q+++E+Y+ G E
Sbjct: 132 AHRALDSLGLPVMVKPVAEGSSVGVAKVDQPDQLAAAFREAARY---GQVMMERYIRGGE 188

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
            T  ++G  +L V  ++ P  DFY ++ KY + ++ + +P+ +  +    +Q +A  A +
Sbjct: 189 YTVSLLGGRALPVIRLSTPH-DFYDFDAKYLANDTEYTIPSGLSAEEESAMQAIALKAFE 247

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            IG  G  R DF+ D   +  + +E+N  PGMT  S+ P  A   G    EL L ++
Sbjct: 248 QIGGSGWGRVDFMRDEHGQN-WLIEVNTVPGMTDHSLVPMAARAVGIEIEELCLGIL 303


>gi|224368043|ref|YP_002602206.1| DdlA [Desulfobacterium autotrophicum HRM2]
 gi|223690759|gb|ACN14042.1| DdlA [Desulfobacterium autotrophicum HRM2]
          Length = 309

 Score =  309 bits (793), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 110/305 (36%), Positives = 176/305 (57%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK-PDLAFNVLH 59
           +A+L GGISSEREVSL+ G     AL+   + + + D    +  ++   +  D+A  +LH
Sbjct: 6   LALLSGGISSEREVSLNGGFQVYEALDKERYDIVRYDPATDLATLVNDAETIDVALLILH 65

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G FGEDG VQ +L+LL+IPY  +G+L SA++M+K+ SK++    G+P    +  +R    
Sbjct: 66  GPFGEDGTVQGLLDLLDIPYQGAGVLGSAIAMNKLVSKRLYLQAGIPTPEFLSFSRTDKV 125

Query: 120 SQHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175
             H     +  P V+KP+  GSS+G+ ++K+++++   L     +   + +L+E YV G+
Sbjct: 126 DLHACVERLGLPIVVKPVSAGSSVGMSIVKQEKNLGAAL--EKGFEQDEAVLLEAYVKGL 183

Query: 176 ELTCGVMGD---ASLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           ELTC V+G+    ++ V EI   +  +F+ Y+ KY +  +  + PA+I   + K VQ  A
Sbjct: 184 ELTCAVVGNQEIEAMPVIEILPGEGHEFFDYDAKYVAGRTQEICPARIEESVRKTVQAHA 243

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             AH+A+  +G SR+D +     R V  LE N  PGMT  S+ P  A  AGYSF +LL  
Sbjct: 244 IEAHKALFLKGYSRTDMIL--SDRGVTVLETNTIPGMTETSLLPRAAKVAGYSFSQLLDR 301

Query: 292 MVEDA 296
           ++E A
Sbjct: 302 LIELA 306


>gi|328949926|ref|YP_004367261.1| D-alanine--D-alanine ligase [Marinithermus hydrothermalis DSM
           14884]
 gi|328450250|gb|AEB11151.1| D-alanine--D-alanine ligase [Marinithermus hydrothermalis DSM
           14884]
          Length = 324

 Score =  309 bits (793), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 95/320 (29%), Positives = 172/320 (53%), Gaps = 27/320 (8%)

Query: 1   MAVLMGGISSEREVSLSSGKACASA---------LEDAGFKVS------QIDVDRS---- 41
           + ++ GG S E EVSL+S +    A         +   G  ++       ++  R+    
Sbjct: 6   ILLIAGGRSGEHEVSLASARGVLEAMPHPTDLAVIAKDGRWLTGTAARAALEAGRAQRGE 65

Query: 42  --VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
                 L+  + D+AF +LHG +GEDG +Q  LE+L +PY  +G+ A+AL MDK  +K+ 
Sbjct: 66  HPFPPPLSWHRYDVAFPLLHGRWGEDGTIQGFLEMLGLPYVGAGVGAAALCMDKELTKRT 125

Query: 100 VSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
           ++  G+PV P + + R     +   SPPY +KP   GSS+GI  ++  +++   L ++  
Sbjct: 126 LAHAGIPVVPWVSLWRGEGLPELPFSPPYFVKPANTGSSVGISKVRTREALGPALEEAFR 185

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPK--SDFYSYELKYSSLNSTHVLP 216
           W   D++L+EQ ++G  EL   ++G+ + + + +   +  S+FY Y  KY+   +  ++P
Sbjct: 186 W--DDRVLVEQGLEGVRELEVALLGNVTAEASVVGEVRYQSEFYDYATKYTPGRAELLIP 243

Query: 217 AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPE 276
           A +  D+ + +Q +A  A++ +G RG++R DF   P    ++  E+N  PG TP S++P+
Sbjct: 244 APVDADVARRLQEVARTAYRLLGVRGLARVDFFLAP-DGALYLNELNTMPGFTPTSMYPK 302

Query: 277 MAAYAGYSFRELLLWMVEDA 296
           +   +G  +  LL  +V  A
Sbjct: 303 LWQASGLEYEALLERLVRLA 322


>gi|126651496|ref|ZP_01723700.1| D-alanylalanine synthetase [Bacillus sp. B14905]
 gi|126591749|gb|EAZ85845.1| D-alanylalanine synthetase [Bacillus sp. B14905]
          Length = 381

 Score =  309 bits (793), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 90/343 (26%), Positives = 157/343 (45%), Gaps = 50/343 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           + +L GG S+E EVSLS+ +A   AL    ++V  I +                      
Sbjct: 27  IGLLYGGKSAEHEVSLSTARAVTGALNFEEYEVYPIFITSEGEWRRGDRLEKPVSTIEEL 86

Query: 47  ----------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84
                                   ++ D+ F +LHG  GEDG VQ +LE+L +PY  +G+
Sbjct: 87  QFGDNTTILENNITDFLIDEHGKSVQFDVIFPLLHGTNGEDGTVQGLLEVLNLPYVGNGV 146

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ---------HLISPPYVIKPLKG 135
           LAS+  MDK+  KQ+    G+P  P     R    ++           ++ P  +KP   
Sbjct: 147 LASSAGMDKVVMKQLFEIAGLPQVPYTYFIRSEWKNEQQAIIERCEERLTWPMFVKPANL 206

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV- 194
           GSS+GI        +   +    +  +  ++++EQ +   E+   V+G+   +V+     
Sbjct: 207 GSSVGISKATSRDELKKAI--EVALQYDRKIVVEQGIIAREIELAVLGNDYPEVSVPGEI 264

Query: 195 -PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
            P ++FY Y+ KY+  ++  ++PA++P +    ++ LA  A +AI   G+ R+DF     
Sbjct: 265 KPVTEFYDYDSKYTDGSTALIIPAELPEETESSLKDLAKRAFKAIDGSGLVRADFFVTA- 323

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              V+  E+N  PG TPVS++P +  +   S+ EL+  ++  A
Sbjct: 324 DHSVYINEVNTLPGFTPVSMYPLLWQHTNVSYPELINRLITLA 366


>gi|110799404|ref|YP_695267.1| D-alanine--D-alanine ligase [Clostridium perfringens ATCC 13124]
 gi|110674051|gb|ABG83038.1| D-alanine--D-alanine ligase [Clostridium perfringens ATCC 13124]
          Length = 302

 Score =  309 bits (793), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 96/299 (32%), Positives = 164/299 (54%), Gaps = 8/299 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + ++MGGISSEREVSL+SG++  + ++   ++VS+I ++    ++      D A   LHG
Sbjct: 3   VGIIMGGISSEREVSLASGESIFNHIDKEKYEVSKIIINNKRDILEKVKGLDFALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFT 117
            FGEDG VQA L++++IPY+  G L+S+L MDK  SK+V+ +  +     I V       
Sbjct: 63  KFGEDGTVQAFLDIMDIPYSGCGALSSSLCMDKNLSKKVLKAENIRTAKWITVKSIEEID 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            D    I  P  +KP  GGSS+    + K + I   +++     + ++++IE +V G E+
Sbjct: 123 YDKIEEIGYPVFVKPNNGGSSVATFKVYKKEDIKNSVMEGL--KYYEEVIIESFVKGREI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC +       + EI   K+DFY Y+ KY++  + H+ P ++   +Y EV+ +A    + 
Sbjct: 181 TCPIFNGELFPILEIK-SKADFYDYKQKYAANGAEHL-PVQLEKSLYDEVKEMALKTFEV 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           + C   +R D +        + LE+N  PGMT  S+FP+ A   G S+ + +  ++E +
Sbjct: 239 LKCEVYARVDMIISE-EGVPYILEVNTLPGMTATSLFPQSAESRGISYSKFIDLIIETS 296


>gi|238797705|ref|ZP_04641200.1| D-alanine--D-alanine ligase [Yersinia mollaretii ATCC 43969]
 gi|238718457|gb|EEQ10278.1| D-alanine--D-alanine ligase [Yersinia mollaretii ATCC 43969]
          Length = 289

 Score =  309 bits (793), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 99/291 (34%), Positives = 154/291 (52%), Gaps = 13/291 (4%)

Query: 15  SLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILEL 74
           SL SG+A  + L +AG     +D        L     D  F  LHG  GEDG +Q +LE 
Sbjct: 2   SLLSGQAVLAGLREAGIDAHGVDTKDFPVTQLKEQGFDKVFIALHGRGGEDGTLQGVLEF 61

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ---------HLIS 125
           L +PYT SG++ASAL+MDK+R+K V  + G+P+ P + +NR   ++            + 
Sbjct: 62  LGLPYTGSGVMASALTMDKLRTKWVWQALGLPISPYVALNRQQFETLSPDELAARVAKLG 121

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            P ++KP   GSS+G+  +     +   L++  ++ H   +LIE+++ G E T G++GD 
Sbjct: 122 LPLIVKPSHEGSSVGMSKVDHANELQGALVE--AFRHDTDVLIEKWLSGPEFTVGILGDD 179

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
            L    I VP   FY YE KY S  + +  P+ +  ++ +++  LA  A+QA+GC G  R
Sbjct: 180 VLPSIRIQVP-GVFYDYEAKYLSDETQYFCPSGLSTELEQQLAALALQAYQALGCSGWGR 238

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            D + D      + LE+N  PGMT  S+ P  A   G SF +L+  ++  A
Sbjct: 239 VDVMQD-SDGNFYLLEVNTSPGMTSHSLVPMAARQYGLSFSQLVARILTLA 288


>gi|251812201|ref|ZP_04826674.1| D-alanyl-alanine synthetase A [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|251804298|gb|EES56955.1| D-alanyl-alanine synthetase A [Staphylococcus epidermidis
           BCM-HMP0060]
          Length = 362

 Score =  309 bits (793), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 82/339 (24%), Positives = 151/339 (44%), Gaps = 46/339 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           + ++ GG S+E +VS+ + +   +A++   ++V  I +                      
Sbjct: 11  ICIVFGGKSAEHDVSILTAQNVLNAIDKERYQVDIIYITNDGEWKKKDNITQEIKNTDEL 70

Query: 49  --------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
                                  D  F +LHG  GEDG +Q + E+L+IPY  +G+LA++
Sbjct: 71  VINDVETGEISQLLSKGSLGKSYDAVFPLLHGPNGEDGTIQGLFEVLDIPYVGNGVLAAS 130

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSL 139
            SMDK+  KQ+    G+P  P I   R   +             ++ P  +KP   GSS+
Sbjct: 131 SSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYENNIIKLVNDKLTYPVFVKPANLGSSV 190

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKS 197
           GI     ++ +   + ++  ++   +L+IEQ ++  E+   V+G+   + T     V   
Sbjct: 191 GISKCNNEEELKSGIAEAFQFDR--KLVIEQGINAREIEVAVLGNDYPETTWPGEVVKDV 248

Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
            FY Y+ KY        +PA +  D+   ++ +A  A +A  C G+ R+DF       ++
Sbjct: 249 AFYDYKSKYKDGKIRLDIPADLDQDVQMTLRNMALEAFKATDCSGLVRADFFVT-DDNQI 307

Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +  E N  PG T  S++P +    G S+ +L+  +++ A
Sbjct: 308 YINETNAMPGFTAYSMYPNLWKNMGLSYPDLIAKLIDLA 346


>gi|289664973|ref|ZP_06486554.1| D-alanyl-alanine synthetase A [Xanthomonas campestris pv.
           vasculorum NCPPB702]
          Length = 367

 Score =  309 bits (793), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 92/348 (26%), Positives = 159/348 (45%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44
           + ++ GG S+E EVSL S +    AL+   F+   I +D+                    
Sbjct: 6   VGLIFGGKSAEHEVSLQSARNILDALDPQRFEAVLIGIDKQGQWHVNDPDSFLLHADDPA 65

Query: 45  ---------------------------VLAHLKPDLAFNVLHGNFGEDGLVQAILELLEI 77
                                        A  + D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  RIALHRSGRGVALLPGAQQQQLQPIQPEQALAQIDVVFPIVHGTLGEDGSLQGLLRMANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIK 131
           P+  SG+L SA++MDK  +K+V+   G+ V P +  NR T     +      +  P  +K
Sbjct: 126 PFVGSGVLGSAVAMDKDMAKRVLRDAGLAVAPFVCFNRHTAAHADVDGLIAQLGLPLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  ++        L  +   ++  ++L+E  + G E+ C V+G+A+   + 
Sbjct: 186 PANQGSSVGVSQVRTADQFAAALALAL--DYDHKVLVEAAIAGREIECAVLGNATPQASV 243

Query: 192 I--AVPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               V    FYSYE KY S   +  V+PA I     + +Q +A  A+QA+ C G++R D 
Sbjct: 244 CGEVVVHDAFYSYETKYISEHGAEIVIPADIDAQAEQRIQHIAVQAYQALECAGMARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                  ++   E+N  PG T +S++P++   +G  +R L+  ++E A
Sbjct: 304 FL-CADGRIVINEVNTLPGFTRISMYPKLWQASGLDYRSLITRLIELA 350


>gi|296270752|ref|YP_003653384.1| D-alanine/D-alanine ligase [Thermobispora bispora DSM 43833]
 gi|296093539|gb|ADG89491.1| D-alanine/D-alanine ligase [Thermobispora bispora DSM 43833]
          Length = 386

 Score =  309 bits (792), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 94/354 (26%), Positives = 158/354 (44%), Gaps = 61/354 (17%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50
           +AV+ GG +SE  VSL    +   A++ + ++V  I + +    VLA  +          
Sbjct: 28  VAVVFGGRNSEHSVSLLGAGSVLEAIDQSKYEVIPIGIAQDGRWVLASERQRYAIESGRL 87

Query: 51  ---------------------------------PDLAFNVLHGNFGEDGLVQAILELLEI 77
                                             D+ F +LHG FGEDG +Q +LE+  +
Sbjct: 88  PTVDETGDALAIPTHSASLVALRPGEIPRALGEVDVVFPLLHGPFGEDGTIQGLLEMAGV 147

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--------DSQHLISPPYV 129
            Y  SG+LASA+ MDK   K V+ + G+PV P ++V                  +  P  
Sbjct: 148 RYVGSGVLASAIGMDKAYMKLVLRASGLPVGPYVVVRDRDWRVDRARVLKEAGDLGWPVF 207

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG------ 183
           +KP + GSS GI  +     +   +   ++  H  ++L+E  + G E+ C V+       
Sbjct: 208 VKPARAGSSQGITKVHDAAGLEEAI--EAAREHDPKVLVEAAIPGREVECAVLESLGDSP 265

Query: 184 -DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            +AS+    +     +FY +E KY         PA +P  + + V+ LA  A +A+GC G
Sbjct: 266 PEASVVGEVVVAEGHEFYDFEAKYFDGGMELHAPADLPESVSERVRALAVQAFEALGCEG 325

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           ++R DF + P   ++   EIN  PG T  S+ P++ A  G  + +L+  +++ A
Sbjct: 326 LARVDFFYTPS-GELIVNEINTMPGFTAQSVAPKLWAATGLPYPQLIDRLIQLA 378


>gi|297202608|ref|ZP_06920005.1| D-alanylalanine synthetase [Streptomyces sviceus ATCC 29083]
 gi|197709862|gb|EDY53896.1| D-alanylalanine synthetase [Streptomyces sviceus ATCC 29083]
          Length = 385

 Score =  309 bits (792), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 101/363 (27%), Positives = 162/363 (44%), Gaps = 71/363 (19%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +AV+ GG SSE  +S+ +  A   A++   + V  I + +     L   +P         
Sbjct: 19  VAVVFGGRSSEHGISVVTAGAVLRAIDRTKYDVLPIGITKDGRWALTADEPERMAITERR 78

Query: 52  -----------------------------------------DLAFNVLHGNFGEDGLVQA 70
                                                    D+ F VLHG +GEDG +Q 
Sbjct: 79  TPSVEELAESSEGGVVLPVDPANREVVYSEPGSVPKALGEVDVVFPVLHGPYGEDGTLQG 138

Query: 71  ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM------------ 118
           +LEL  +PY  SG+LASA+  DK   K+V +S G+ V P +++                 
Sbjct: 139 LLELSGVPYVGSGVLASAVGQDKEYMKRVFTSFGLKVGPYVVIRPREWEQNESAARKKIV 198

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           D       P  +KP + GSS+GI  +  D    LD   + + +H  ++L+E  + G E+ 
Sbjct: 199 DFAGEHGWPLFVKPARAGSSIGITKV--DDLSGLDEAIAEAQSHDPKILVEAALRGREIE 256

Query: 179 CGVM----GDASLDVTEIAVP-KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           CGV+    G  +    EI  P +  +Y +E KY   ++  ++PA +  +   EVQ+LA  
Sbjct: 257 CGVLEFEDGPRASVPAEIPPPQEHAYYDFEAKY-IDSTPGIVPAPLTPEETAEVQKLAVD 315

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           A  A  C G+ R+DF       +    EIN  PG TP+S++P+M   +G ++ EL+  ++
Sbjct: 316 AFDAASCEGLVRADFFLTE-DGEFVINEINTLPGFTPISMYPQMWEKSGIAYPELVDRLI 374

Query: 294 EDA 296
           E A
Sbjct: 375 EAA 377


>gi|254480088|ref|ZP_05093336.1| putative D-ala D-ala ligase N-terminal domain protein [marine gamma
           proteobacterium HTCC2148]
 gi|214039650|gb|EEB80309.1| putative D-ala D-ala ligase N-terminal domain protein [marine gamma
           proteobacterium HTCC2148]
          Length = 307

 Score =  309 bits (792), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 102/299 (34%), Positives = 161/299 (53%), Gaps = 8/299 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+ER+VSL SG+  + AL    + V  +D       V      D AFN LHG
Sbjct: 11  IAVLLGGTSAERDVSLLSGRTVSDALRGLDYSVRDVDP-ADADWVAQLQGVDYAFNALHG 69

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q  LE L I YT SG+L SAL+MDK RSKQ+    G+      +++  T D 
Sbjct: 70  PGGEDGTIQGALEALGIRYTGSGVLGSALAMDKRRSKQLWQGIGIATGGFEMLDADT-DW 128

Query: 121 QHLIS--PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           Q +I       +KP   GSS+G+      +S+      +++++ G  ++ E++++G E T
Sbjct: 129 QAVIDRLGKVFVKPACEGSSIGMAPASDAESLRTAYEGAAAYSGG--VMAEKFINGPEYT 186

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             ++GD +L    + V +++FY Y+ KY S ++++  P+ +      +V  +A  A +++
Sbjct: 187 VAILGDEALPSIRM-VTENEFYDYDAKYLSDDTSYHCPSGLNASEEAQVGAMALAAFRSL 245

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           GC G  R D + D    + F LE+N  PGMT  S+ P  A  AG     L+  ++  AS
Sbjct: 246 GCAGWGRVDTMRD-SDGRFFVLEVNTIPGMTSHSLVPMAARQAGMEVPALVERILTLAS 303


>gi|289669898|ref|ZP_06490973.1| D-alanyl-alanine synthetase A [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 367

 Score =  309 bits (792), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 92/348 (26%), Positives = 159/348 (45%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44
           + ++ GG S+E EVSL S +    AL+   F+   I +D+                    
Sbjct: 6   VGLIFGGKSAEHEVSLQSARNILDALDPQRFEAVLIGIDKQGQWHVNDPDSFLLHADDPA 65

Query: 45  ---------------------------VLAHLKPDLAFNVLHGNFGEDGLVQAILELLEI 77
                                        A  + D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  RIALHRSGRGVALLPGAQQQQLQPIQPEQALAQIDVVFPIVHGTLGEDGSLQGLLRMANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIK 131
           P+  SG+L SA++MDK  +K+V+   G+ V P +  NR T     +      +  P  +K
Sbjct: 126 PFVGSGVLGSAVAMDKDMAKRVLRDAGLAVAPFVCFNRHTAAHADVDGLIAQLGLPLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  ++        L  +   ++  ++L+E  + G E+ C V+G+A+   + 
Sbjct: 186 PANQGSSVGVSQVRTADQFAAALALAL--DYDHKVLVEAAIAGREIECAVLGNATPQASV 243

Query: 192 I--AVPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               V    FYSYE KY S   +  V+PA I     + +Q +A  A+QA+ C G++R D 
Sbjct: 244 CGEVVVHDAFYSYETKYISEYGAEIVIPADIDAQAEQRIQHIAVQAYQALECAGMARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                  ++   E+N  PG T +S++P++   +G  +R L+  ++E A
Sbjct: 304 FL-CADGRIVINEVNTLPGFTRISMYPKLWQASGLDYRSLITRLIELA 350


>gi|331007263|ref|ZP_08330466.1| D-alanine-D-alanine ligase [gamma proteobacterium IMCC1989]
 gi|330418912|gb|EGG93375.1| D-alanine-D-alanine ligase [gamma proteobacterium IMCC1989]
          Length = 307

 Score =  309 bits (792), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 95/296 (32%), Positives = 155/296 (52%), Gaps = 6/296 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VL GG+S+ER+VSL SG A   AL   G     ID+  +V   +     D AF VLHG
Sbjct: 12  VGVLFGGLSAERDVSLESGHAVFEALLTLGVDAVAIDLQDNVVDQITQANIDAAFIVLHG 71

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--M 118
             GEDG +QA+L+++ IPYT S   +SAL+M+K+ SKQ+    GV     I+++  T  +
Sbjct: 72  GIGEDGRLQALLDIMNIPYTGSDTQSSALAMNKLLSKQLWQGVGVSTSSFIVLDESTDFV 131

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           ++   +    ++KP   GSS+G+      + +      + +  +   +L E+ + G E T
Sbjct: 132 EAIAQLGGSAMVKPAHEGSSIGMGFAHSPEELGAAY--AHAKKYDAIVLAEKVLVGDEYT 189

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             ++    L + ++   +  FY Y+ KY + ++ ++ P  + L+  +EV  LA  A  ++
Sbjct: 190 VAILNGQVLPIIKLETDRV-FYDYDAKYIANDTRYICPCGLSLEEEQEVNALALSAFSSL 248

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            C G  R D + D        LE+N  PGMT  S+ P  A  AGYSF  L+  +++
Sbjct: 249 QCEGWGRVDIMRDENGG-FHVLEVNTVPGMTSHSLVPMAAKAAGYSFERLVGEILK 303


>gi|166365192|ref|YP_001657465.1| D-alanyl-alanine synthetase A [Microcystis aeruginosa NIES-843]
 gi|190359167|sp|B0JHC1|DDL_MICAN RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|166087565|dbj|BAG02273.1| D-alanine--D-alanine ligase [Microcystis aeruginosa NIES-843]
          Length = 352

 Score =  309 bits (792), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 95/343 (27%), Positives = 159/343 (46%), Gaps = 49/343 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALED----AGFKVSQIDVDRSVGL--------VLAH 48
           + +L GG S E EVS++S ++   A         + V    +D++           +L  
Sbjct: 6   VGLLFGGRSGEHEVSINSARSILQAFNYPENLDKYAVIPFYIDKNGCWHSAATARQILTS 65

Query: 49  LKP---------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87
            +P                     ++ F +LHG  GEDG +Q +L L+ + +  SG+L S
Sbjct: 66  GQPLAIESNIKVNIWQFPPEVREMEVWFPILHGPNGEDGTLQGLLTLMRVAFVGSGVLGS 125

Query: 88  ALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------------QHLISPPYVIKPLKG 135
            L MDK+  K   ++ G+P      + R  + S               I  P  IKP   
Sbjct: 126 CLGMDKIAMKTAFAAAGLPQVKYKAITRSQVWSNPCVFPQLCDQIAEEIGYPCFIKPANL 185

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195
           GSS+GI   +  Q +   L  ++S++   ++++E  V   E+ C V+G+ +   + +   
Sbjct: 186 GSSVGISKARNRQELEAALDSAASYDR--RIIVEAGVTAREIECAVLGNDNPQASLVGEI 243

Query: 196 --KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
              SDFY YE KY+   S+ V+PA IP  I  +V+ +A  A +A+   G+SR DF +   
Sbjct: 244 TFDSDFYDYETKYTDGRSSMVIPANIPDKIANQVREMAVEAFKAVDAAGLSRVDFFYVEN 303

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           + +V   EIN  PG T  S++P++    G  F +L+  +V+ A
Sbjct: 304 TGEVLINEINTLPGFTNFSMYPQLWKATGLEFDKLVDKLVQLA 346


>gi|111225171|ref|YP_715965.1| D-alanyl-alanine synthetase A [Frankia alni ACN14a]
 gi|111152703|emb|CAJ64446.1| D-alanine-D-alanine ligase A [Frankia alni ACN14a]
          Length = 367

 Score =  309 bits (792), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 98/353 (27%), Positives = 158/353 (44%), Gaps = 60/353 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL----AHLKP----- 51
           +A+L GG S+E  +S  S      AL+   + V+ + +D S   V       L P     
Sbjct: 10  LALLFGGRSTEHAISCVSAGGVLRALDPDVYDVALVGIDPSGRWVFMPDAKALTPADGAL 69

Query: 52  --------------------------------------DLAFNVLHGNFGEDGLVQAILE 73
                                                 D+ F +LHG FGEDG +Q +LE
Sbjct: 70  PQVTASRGTSVVLAPDPTAARWYPRDGGESIQGPLGDVDVVFPLLHGPFGEDGTIQGLLE 129

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT---MDSQHLISPPYVI 130
           +  +PY  SG+ ASA +MDK   K ++ + G+PV P  +V          Q  +  P  +
Sbjct: 130 MAGVPYVGSGVFASAAAMDKQHMKSMLQAAGLPVGPYAVVRAGQTLSEADQDRLGLPVFV 189

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG------- 183
           KP +GGSS+GI  +     +   +  + +  +  ++L+E  + G E+ CGV+G       
Sbjct: 190 KPARGGSSIGISRVDAWADLDTAVKTARA--NDPKVLVEAAITGREIECGVLGRLDGPGA 247

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
            AS+         + FY +E KY S  +   +PA++       V+++A  A +A+ C G+
Sbjct: 248 QASVPAEITVTSATGFYDFEAKYVSDQTRFDIPARLSPSALARVRQVAVAAFEALDCAGL 307

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +R D    P    V   E+N  PG TP S+FP M A +G ++ +L+  +V  A
Sbjct: 308 ARVDVFVTP-DDHVVVNEVNTMPGFTPTSMFPRMWAASGITYPDLVDRLVRLA 359


>gi|154500480|ref|ZP_02038518.1| hypothetical protein BACCAP_04152 [Bacteroides capillosus ATCC
           29799]
 gi|150270711|gb|EDM98007.1| hypothetical protein BACCAP_04152 [Bacteroides capillosus ATCC
           29799]
          Length = 350

 Score =  309 bits (792), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 108/345 (31%), Positives = 160/345 (46%), Gaps = 52/345 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           +AVL GG S+E  VSL S  A  + L+ A + +  + + R    +               
Sbjct: 6   IAVLFGGCSTEYPVSLQSAHAVITHLDRAKYDLVLLGITRDGRWLHYDGPVDHIPADTWH 65

Query: 46  ----------------------LAHLKP-----DLAFNVLHGNFGEDGLVQAILELLEIP 78
                                 LA   P     D AF VLHG  GEDG VQ +LEL  IP
Sbjct: 66  RNAAHCTPALISPDRETHGLLLLAAAGPSVIRLDAAFPVLHGKNGEDGTVQGLLELAGIP 125

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-----DSQHLISPPYVIKPL 133
               G L SA+ MDK  + ++ +S G+ V  S L   +       D    +S P  +KP 
Sbjct: 126 VVGCGSLGSAVCMDKDVAHRLAASAGLAVPRSALFRSWEDPALLPDLTAGLSLPLFVKPA 185

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
           + GSS GI  +     +P  +  +++  H D+++IE+ V G E+ C V+G  +L V  + 
Sbjct: 186 RSGSSFGITRVTDRADLPQAV--AAALEHDDKVVIEESVPGFEVGCAVLGTETLTVGRVD 243

Query: 194 VPK--SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
             +    F+ Y  KY  L S   +PA+I  +    +Q+ A  A++A+GC G +R+DF F 
Sbjct: 244 EIELTQGFFDYTEKYQLLTSKIHMPARITPEDEARIQQAAVTAYRALGCTGCARADFFFT 303

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           P   ++ + EIN  PG T  S +P M A  G  F  L+  +VE A
Sbjct: 304 P-EGEIVFNEINTIPGFTSHSRYPAMMAGVGLDFSALVNRLVEQA 347


>gi|254424655|ref|ZP_05038373.1| D-ala D-ala ligase N-terminal domain protein, putative
           [Synechococcus sp. PCC 7335]
 gi|196192144|gb|EDX87108.1| D-ala D-ala ligase N-terminal domain protein, putative
           [Synechococcus sp. PCC 7335]
          Length = 364

 Score =  308 bits (791), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 93/350 (26%), Positives = 157/350 (44%), Gaps = 58/350 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASAL----EDAGFKVSQIDVDRSVGL--------VLAH 48
           + ++ GG S E EVS+ S  A A AL        + V  I + +            VLA 
Sbjct: 8   VGLVFGGRSGEHEVSIRSAGAIAQALSIDENQTKYAVVPILIHKDGSWESGQTAQQVLAS 67

Query: 49  LKP------------------------------DLAFNVLHGNFGEDGLVQAILELLEIP 78
            KP                              D+ F V+HG  GEDG +Q + E+LE+P
Sbjct: 68  GKPAMQDEGPIGELPSAAKPIKRLPDLSALGHIDIWFPVIHGPNGEDGTLQGLFEVLEVP 127

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------------QHLISP 126
           Y   G+L S+L MDK+ SK   +  G+P      V+R  + S               +  
Sbjct: 128 YVGCGVLGSSLGMDKLASKSAFAQAGLPQVNYRGVSRAEIYSNPCIFPKLCDGIDEALGY 187

Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186
           P  +KP   GSS+GI      Q +   L  ++S++   ++++E  V   E+ C ++G+ +
Sbjct: 188 PCFVKPANLGSSVGISKATNRQELETALDLAASYDR--RVIVETGVVAREIECSILGNDN 245

Query: 187 LDVTEIAVPK--SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244
              + +   +  +DFY Y  KY+   +  ++P+ +   +   +Q +A  A QAI   G++
Sbjct: 246 PKASVLGETRFSTDFYDYAAKYTEGGAELLIPSPVSDQVRDRIQEMAIAAFQAIDGSGLA 305

Query: 245 RSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           R DF +   + ++   EIN  PG T  S++P M   +G  F +L+  +++
Sbjct: 306 RVDFFYIEKTDQILINEINTMPGFTATSMYPMMWEASGIKFSDLVDKLIQ 355


>gi|225677143|ref|ZP_03788142.1| D-alanine--D-alanine ligase [Wolbachia endosymbiont of Muscidifurax
           uniraptor]
 gi|225590810|gb|EEH12038.1| D-alanine--D-alanine ligase [Wolbachia endosymbiont of Muscidifurax
           uniraptor]
          Length = 337

 Score =  308 bits (791), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 116/318 (36%), Positives = 182/318 (57%), Gaps = 23/318 (7%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +A+L GG S ERE+SL SG+A   AL+   +   +IDVD ++   L  + P LAF  LHG
Sbjct: 5   IAILSGGFSCEREISLMSGRAVKKALDSLSYNAIEIDVDSNIAEKLKKINPGLAFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG +Q +LE+L I YTHSG++ASA++M+K  SK +  S  +      +++R  +  
Sbjct: 65  PYGEDGCIQGLLEILGIKYTHSGVMASAVAMNKAMSKHIFWSLSIDTPKGYVISREDLLK 124

Query: 121 QHL-ISPPYVIKPLKGGSSLGIIVIKKDQS-IPLDLLQSSSWNHGDQ------------- 165
            ++ I  PYV+KP+  GSS+G+ ++   +  + L      + +   +             
Sbjct: 125 NNIKIDYPYVLKPINEGSSIGVHIVSSHEDYLKLKFDVIPARDQEKKTVSGYLDDKEGAT 184

Query: 166 ------LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI 219
                 +++E+Y+ GIEL   V+ D ++   EI  PK+ FY YE KY+   + H+ PA+I
Sbjct: 185 SMTKDLMIVEEYIPGIELHTAVLLDEAIGTMEIR-PKNKFYDYEAKYTDGFAEHIFPAEI 243

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279
           P +IYK     A   HQ +GC+ ISRSDF ++P +  +  LEIN  PG T +S+ PE+A 
Sbjct: 244 PDNIYKMTLEHALKVHQFLGCKTISRSDFRYNPKNNTLKMLEINTHPGFTELSLVPEIAK 303

Query: 280 -YAGYSFRELLLWMVEDA 296
              G +F EL+  ++ED+
Sbjct: 304 LAKGINFNELVKIIIEDS 321


>gi|117928793|ref|YP_873344.1| D-alanine--D-alanine ligase [Acidothermus cellulolyticus 11B]
 gi|117649256|gb|ABK53358.1| D-alanine--D-alanine ligase [Acidothermus cellulolyticus 11B]
          Length = 377

 Score =  308 bits (791), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 102/360 (28%), Positives = 162/360 (45%), Gaps = 63/360 (17%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +AV+ GG S+E  +S  +     +AL  AG+ V  I + R    VL    P         
Sbjct: 17  VAVVFGGRSTEHAISCLTAGGVMTALTAAGYDVCAIGITRDGRWVLPPADPAPLTAKDGR 76

Query: 52  -------------------------------------DLAFNVLHGNFGEDGLVQAILEL 74
                                                D+AF VLHG FGEDG +Q + E+
Sbjct: 77  LPEVDASHPPVVVVPDPADPGLFVRDVSGRLRSLGRIDVAFPVLHGPFGEDGTIQGLFEM 136

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--------DSQHLISP 126
             IPY  SG+ ASA +MDK   K +    G+P  P ++V             +S   +  
Sbjct: 137 AGIPYVGSGVFASAAAMDKQFMKVLFVGAGLPDVPHVVVTPDEWRTDPAAVRESVASLGF 196

Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186
           P  +KP +GGSS+ +  + K   +  D     +     ++L+E+ +DG E+  GV+ D  
Sbjct: 197 PVFVKPARGGSSVAVTKVHKPADV--DEAIERAREVDPKVLVERAIDGREIEVGVLDDVH 254

Query: 187 LDVTEIAVPKS------DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
               +++VP        +FY +E KY    +   +PA +P  + + V R A +A++A+GC
Sbjct: 255 GGAPKVSVPAEILVRGREFYDFEAKYLDQGTVITIPASLPPAVLQTVNRYAVIAYRALGC 314

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
            G++R DF     + +VF  E+N  PG TP S+FP +    G  +  L+ ++V+ A   R
Sbjct: 315 EGLARVDFFVTA-TGEVFVNELNTMPGFTPTSVFPRVWQATGLEYPALVDYLVQLALRRR 373


>gi|239991046|ref|ZP_04711710.1| D-alanyl-alanine synthetase A [Streptomyces roseosporus NRRL 11379]
 gi|291448047|ref|ZP_06587437.1| D-alanyl-alanine synthetase A [Streptomyces roseosporus NRRL 15998]
 gi|291350994|gb|EFE77898.1| D-alanyl-alanine synthetase A [Streptomyces roseosporus NRRL 15998]
          Length = 391

 Score =  308 bits (791), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 107/366 (29%), Positives = 158/366 (43%), Gaps = 71/366 (19%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +AV+ GG SSE  +S+ +  A   A++   + V  I +       L   +P         
Sbjct: 25  VAVVFGGRSSEHGISVVTAGAVMKAIDRTKYDVLPIGITADGRWALTADEPERMAITDRK 84

Query: 52  -----------------------------------------DLAFNVLHGNFGEDGLVQA 70
                                                    D+ F VLHG +GEDG +Q 
Sbjct: 85  VPDVDLLTGSAEGSVVLSVDPGSREVVYTEPGAVPKALGEVDVVFPVLHGPYGEDGTLQG 144

Query: 71  ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI------ 124
           +LEL  +PY  +G+LASA+  DK   K+V  S G+PV P  +V     D+          
Sbjct: 145 LLELSGVPYVGAGVLASAVGQDKEYMKRVFISYGLPVGPYEVVRPREWDNDPAAARKRIV 204

Query: 125 ------SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                   P  IKP +GGSS+GI  +  D    LD     +  H  + L+E  + G E+ 
Sbjct: 205 DFAGEHGWPLFIKPARGGSSMGITKV--DDLSGLDAAIEEARRHDPKFLVESLLRGREIE 262

Query: 179 CGVMG-----DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           CGV+       AS+      V   DFY +E KY   ++T ++PA +  +   EVQRLA  
Sbjct: 263 CGVLEFEDGPRASVPAEIPPVTAHDFYDFEAKY-IDSATGLVPAPLTGEQTAEVQRLAVA 321

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           A  A+ C G+ R+DF            EIN  PG TP+S++P M   +G S+ EL+  ++
Sbjct: 322 AFDAVSCEGLVRADFFLTE-DGTFVINEINTLPGFTPISMYPRMWQESGVSYPELVDRLI 380

Query: 294 EDASCL 299
           + A   
Sbjct: 381 QAALTR 386


>gi|198242528|ref|YP_002214082.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|197937044|gb|ACH74377.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|326621826|gb|EGE28171.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica
           serovar Dublin str. 3246]
          Length = 285

 Score =  308 bits (791), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 96/305 (31%), Positives = 149/305 (48%), Gaps = 34/305 (11%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+ER+VSL+SG A  + L + G     +D        L  +     F  LHG
Sbjct: 5   IAVLLGGTSAERDVSLNSGAAVLAGLREGGIDAHPVDPQEVDVAQLKAMGFQKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
                                 G++ASALSMDK+RSK +    G+PV P + + R   + 
Sbjct: 65  R---------------------GVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 103

Query: 121 ---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P ++KP + GSS+G+  + ++ ++   L  S ++ H D++LIE++
Sbjct: 104 GLSEEQKARISALGLPLIVKPSREGSSVGMTKVVEENALQGAL--SLAFQHDDEILIEKW 161

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L    I  P   FY YE KY S  + +  PA +       +Q L 
Sbjct: 162 LCGPEFTVAIVGEEILPSIRIQ-PAGTFYDYEAKYLSDETQYFCPAGLDASQEAALQSLV 220

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A +A+GC G  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 221 LQAWKALGCTGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 279

Query: 292 MVEDA 296
           ++E A
Sbjct: 280 ILELA 284


>gi|330684802|gb|EGG96495.1| D-ala D-ala ligase N-terminal domain protein [Staphylococcus
           epidermidis VCU121]
          Length = 356

 Score =  308 bits (791), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 84/339 (24%), Positives = 150/339 (44%), Gaps = 46/339 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           + ++ GG S+E +VS+ + +   +A++   ++V  I +                      
Sbjct: 6   ICIVYGGKSAEHDVSILTAQNVLNAIDKDKYQVDIIYITNDGEWKKQDNITNEIESTEDL 65

Query: 49  --------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
                                  D  F +LHG  GEDG +Q + E+L+IPY  +G+LA++
Sbjct: 66  RIDNIPTGEISQLLSKGSSGQSYDAVFPLLHGPNGEDGTIQGLFEVLDIPYVGNGVLAAS 125

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSL 139
            SMDK+  KQ+    G+P  P I   R   +             +S P  +KP   GSS+
Sbjct: 126 SSMDKLVMKQLFEHRGLPQLPYISFLRSEFEKYENNILKLVNDKLSYPVFVKPANLGSSV 185

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKS 197
           GI     +  +   + ++  ++   +L+IEQ V+  E+   V+G+   + T     V   
Sbjct: 186 GISKCNNEDELKSGIKEAFQFDR--KLVIEQGVNAREIEVAVLGNDYPETTWPGEVVKDV 243

Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
            FY Y+ KY        +PA +  D+   ++ +A  A +A  C G+ R+DF       ++
Sbjct: 244 AFYDYKSKYKDGKIQLQIPADLDQDVQMTLRNMALEAFKATDCSGLVRADFFVTE-DNQI 302

Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +  E N  PG T  S++P +    G S+ +L+  +++ A
Sbjct: 303 YINETNAMPGFTSFSMYPSLWENMGLSYADLIAKLIDLA 341


>gi|169334678|ref|ZP_02861871.1| hypothetical protein ANASTE_01081 [Anaerofustis stercorihominis DSM
           17244]
 gi|169257416|gb|EDS71382.1| hypothetical protein ANASTE_01081 [Anaerofustis stercorihominis DSM
           17244]
          Length = 358

 Score =  308 bits (791), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 91/338 (26%), Positives = 162/338 (47%), Gaps = 46/338 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------------------- 38
           + V+ GG S E +VSL S     + +    F ++ I +                      
Sbjct: 7   VGVVFGGKSGEYDVSLLSAYNVINGINKEKFDITMIGITLEGKFYIYKGDVEKIKTNEWI 66

Query: 39  --------DRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
                   D S+         D+ F VLHG  GEDG +Q + E+++ PY    +LAS++ 
Sbjct: 67  NDSKNLISDFSLFDGDIINNVDIIFPVLHGQNGEDGRIQGLFEMMDKPYVGCEVLASSVC 126

Query: 91  MDKMRSKQVVSSCGVPVCPSILVNRFTMDS-----------QHLISPPYVIKPLKGGSSL 139
           MDK  +K++  S G+PV   +LV    +++           +  +  P  +KP+  GSS+
Sbjct: 127 MDKDIAKRIFRSVGIPVVDDVLVFNTDIETDKLLEATLDRCEENLPYPMFVKPVNMGSSV 186

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA--VPKS 197
           GI   K   S+   LL++  +    ++L+E+ ++  E+   V+G++  + +     V   
Sbjct: 187 GISKAKDRDSLKEALLKAVKF--DTKILVEKGINAREIEVAVLGNSHPEASYPGEIVSCK 244

Query: 198 DFYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256
           +FY YE KY S + + +  PAKI   I ++++  A  A +A+G  G+SR DF  D  S+ 
Sbjct: 245 EFYDYEAKYLSGDGSRIDIPAKIDDKIIEKIRTYAVKAFKAVGGSGLSRVDFFLDKDSKD 304

Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           ++  E N  PG T +S++ +M  Y G  + +L+  +++
Sbjct: 305 IYLNEANTLPGFTNISMYAKMWDYMGIGYSDLIEKLID 342


>gi|320008327|gb|ADW03177.1| D-alanine/D-alanine ligase [Streptomyces flavogriseus ATCC 33331]
          Length = 394

 Score =  308 bits (791), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 109/367 (29%), Positives = 159/367 (43%), Gaps = 72/367 (19%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +AV+ GG SSE  +S+ +  A  SAL+   + V  I + R    VL    P         
Sbjct: 28  VAVVFGGRSSEHGISVVTAGAVMSALDRTKYNVLPIGITRDGRWVLTSDDPARMAITDRQ 87

Query: 52  -----------------------------------------DLAFNVLHGNFGEDGLVQA 70
                                                    D+ F VLHG +GEDG +Q 
Sbjct: 88  VPDVDQLAGSARGAVALSVDPGNRDVVVGEPGSVPEVLGEVDVVFPVLHGPYGEDGTLQG 147

Query: 71  ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI------ 124
            LEL  +PY  +G+L+SA+  DK   K+V  S G+PV P  +V     D+          
Sbjct: 148 FLELSGVPYVGAGVLSSAVGQDKEYMKRVFVSFGLPVGPYEVVRPREWDTDRPAARKRVM 207

Query: 125 ------SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                   P  +KP +GGSS+GI  +  D +  LD     +  H  + L+E  + G E+ 
Sbjct: 208 EFAAEHGWPLFVKPARGGSSMGITKV--DDAAGLDEAIEEARRHDPKFLVESLLSGREIE 265

Query: 179 CGVMG-----DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           CGV+       AS+      V   DFY +E KY   ++  ++PA +  +   EVQRLA  
Sbjct: 266 CGVLEFEDGPRASVPAEIPPVTAHDFYDFEAKY-IDSAAGLVPAPLTDEQTAEVQRLAVE 324

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           A +A  C G+ R+DF            EIN  PG TP+S+FP M   +G  + EL+  ++
Sbjct: 325 AFEAASCEGLVRADFFLT-DDGSFVINEINTMPGFTPISMFPRMWQASGVEYPELVDRLI 383

Query: 294 EDASCLR 300
             A+  R
Sbjct: 384 -TAALNR 389


>gi|166710205|ref|ZP_02241412.1| D-alanyl-alanine synthetase A [Xanthomonas oryzae pv. oryzicola
           BLS256]
          Length = 367

 Score =  308 bits (791), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 94/348 (27%), Positives = 164/348 (47%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44
           + ++ GG S+E EVSL S +    AL+   F+   I +D+                    
Sbjct: 6   VGLIFGGKSAEHEVSLQSARNILDALDPQRFEPVLIGIDKQGQWHVNDPDSFLLHADDPA 65

Query: 45  --------------------VLAHLKP-------DLAFNVLHGNFGEDGLVQAILELLEI 77
                                L  ++P       D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  RIALHRSGRGVALLPGAQQQQLRPIQPEQALAQIDVVFPIVHGTLGEDGSLQGLLRMANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIK 131
           P+  SG+L SA++MDK  +K+V+   G+ V P +  +R T     +      +  P  +K
Sbjct: 126 PFVGSGVLGSAVAMDKDMAKRVLRDAGLAVAPFVCFDRHTAAHADVDTLIAQLGLPLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  ++   +    L  + +++H  ++L+E  V G E+ C V+G+A    + 
Sbjct: 186 PANQGSSVGVSQVRTADAFAAALALALAYDH--KVLVEAAVAGREIECAVLGNAVPHASV 243

Query: 192 I--AVPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               V    FYSY  KY S   +  V+PA I     + +Q++A  A+QA+GC G++R D 
Sbjct: 244 CGEVVVHDAFYSYATKYISEHGAEIVIPADIDAQTQQRIQQIAVQAYQALGCAGMARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                  ++   E+N  PG T +S++P++   +G  +R L+  ++E A
Sbjct: 304 FL-CADGRIVINEVNTLPGFTRISMYPKLWQASGLDYRGLITRLIELA 350


>gi|291518128|emb|CBK73349.1| D-alanine--D-alanine ligase [Butyrivibrio fibrisolvens 16/4]
          Length = 347

 Score =  308 bits (790), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 101/341 (29%), Positives = 162/341 (47%), Gaps = 52/341 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------------------- 38
           + VL GG+SSER+VS  SG   A AL + G +   +DV                      
Sbjct: 3   IVVLAGGLSSERDVSFKSGTMVAKALRNRGHRALVLDVFMGYKDADCDITDIFENSEANS 62

Query: 39  ---------------------DRSVGLVLAH-----LKPDLAFNVLHGNFGEDGLVQAIL 72
                                D+S      +      K D+ F  LHG  GE G VQA  
Sbjct: 63  VKVSDIPTEAPDIKAIKASRPDQSPSFFGPNVIKICQKADVVFMALHGGEGESGKVQAAF 122

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKP 132
           +L  I YT +  L+SA++MDK  +K V+   GVPV     + +           P ++KP
Sbjct: 123 DLFGIKYTGNDYLSSAIAMDKQMTKNVIEKAGVPVPTGTSLKKENRKKFKFDKFPCIVKP 182

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192
             GGSS+G+ ++ + + +   L  +  W   D++++EQ++ G E + GV+   +L + EI
Sbjct: 183 NCGGSSIGVTIVNEPEELNAALDAAFEWE--DEVVVEQFISGREFSDGVIEGKALPIIEI 240

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
           A PK  FY Y+ KY++ ++    PA+I      ++++ A +A++A+G    +R DF+ D 
Sbjct: 241 A-PKQGFYDYKNKYAAGSAVETCPAEISHKATDKMRKYAVMAYKALGLTTYARIDFMMDK 299

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
               ++ LE N  PGMTP S+ P+ A   G  F +L   ++
Sbjct: 300 DEN-IYCLEANTLPGMTPTSLLPQEAKVTGMDFEDLCEKLI 339


>gi|239637377|ref|ZP_04678359.1| D-alanine--D-alanine ligase [Staphylococcus warneri L37603]
 gi|239596977|gb|EEQ79492.1| D-alanine--D-alanine ligase [Staphylococcus warneri L37603]
          Length = 356

 Score =  308 bits (790), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 84/339 (24%), Positives = 150/339 (44%), Gaps = 46/339 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           + ++ GG S+E +VS+ + +   +A++   ++V  I +                      
Sbjct: 6   ICIVYGGKSAEHDVSILTAQNVLNAIDKDKYQVDIIYITNDGEWKKQDNITSEIESTEDL 65

Query: 49  --------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
                                  D  F +LHG  GEDG +Q + E+L+IPY  +G+LA++
Sbjct: 66  RIDNIPTGEISQLLSKGSLGQSYDAVFPLLHGPNGEDGTIQGLFEVLDIPYVGNGVLAAS 125

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSL 139
            SMDK+  KQ+    G+P  P I   R   +             +S P  +KP   GSS+
Sbjct: 126 SSMDKLVMKQLFEHRGLPQLPYISFLRSEFEKYENNILKLVNDKLSYPVFVKPANLGSSV 185

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKS 197
           GI     +  +   + ++  ++   +L+IEQ V+  E+   V+G+   + T     V   
Sbjct: 186 GISKCNNEDELKSGIKEAFQFDR--KLVIEQGVNAREIEVAVLGNDYPETTWPGEVVKDV 243

Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
            FY Y+ KY        +PA +  D+   ++ +A  A +A  C G+ R+DF       ++
Sbjct: 244 AFYDYKSKYKDGKIQLQIPADLDQDVQMTLRNMALEAFKATDCSGLVRADFFVTE-DNQI 302

Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +  E N  PG T  S++P +    G S+ +L+  +++ A
Sbjct: 303 YINETNAMPGFTSFSMYPSLWENMGLSYADLIAKLIDLA 341


>gi|120403135|ref|YP_952964.1| D-alanyl-alanine synthetase A [Mycobacterium vanbaalenii PYR-1]
 gi|190359169|sp|A1T708|DDL_MYCVP RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|119955953|gb|ABM12958.1| D-alanine--D-alanine ligase [Mycobacterium vanbaalenii PYR-1]
          Length = 367

 Score =  308 bits (790), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 103/360 (28%), Positives = 164/360 (45%), Gaps = 65/360 (18%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +AV+ GG SSE  +S  S  +    L+   F+V  + +      VL   +P         
Sbjct: 7   VAVVYGGRSSEHAISCVSAGSILRNLDPQRFEVVPVGITPEGSWVLTDGRPETLAITDGA 66

Query: 52  --------------------------------------DLAFNVLHGNFGEDGLVQAILE 73
                                                 D+ F VLHG +GEDG +Q +LE
Sbjct: 67  LPGVSGSSGTELALAADPGRRGQLLSLGDAAGDVLAAVDVVFPVLHGPYGEDGTIQGLLE 126

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT----MDSQHLISPPYV 129
           L  +PY  +G+LASA  MDK  +K+++++ G+PV   +++        ++ +  +  P  
Sbjct: 127 LAGVPYVGAGVLASAAGMDKEFTKKLLTAAGLPVGDHVVLRPREATVSLEDRERLGLPVF 186

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG--DASL 187
           +KP +GGSS+G+  +    ++P  +    +  H  ++++E  + G EL CGV+   D  L
Sbjct: 187 VKPSRGGSSIGVSRVTAWDALPAAI--ELARRHDPKVIVEAAIPGRELECGVLEFPDGHL 244

Query: 188 D---VTEIAVP-----KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
           +   V EI V      +  FY +E KY    +   +PAK+   I + V+ LA  A  AI 
Sbjct: 245 EASTVGEIRVAGVRGREDGFYDFETKYLDDGAELDVPAKVDDAIAEAVRGLAIRAFDAID 304

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
           C+G++R DF            EIN  PG T +S++P M A +G  +  LL  MVE A   
Sbjct: 305 CQGLARVDFFLTDAG--PVINEINTMPGFTTISMYPRMWAASGIDYPTLLATMVETAIAR 362


>gi|262200426|ref|YP_003271634.1| D-alanine/D-alanine ligase [Gordonia bronchialis DSM 43247]
 gi|262083773|gb|ACY19741.1| D-alanine/D-alanine ligase [Gordonia bronchialis DSM 43247]
          Length = 358

 Score =  308 bits (790), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 90/339 (26%), Positives = 156/339 (46%), Gaps = 45/339 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           + VL GG+S+E +VS  +     +A +   +++  I + +    +               
Sbjct: 8   LVVLFGGVSAEHDVSRVTAAHVLAAADRGKYELVPIGIAKDGTWLRNDKAIAALTDGTPL 67

Query: 47  --------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
                               A   P +   +LHG  GEDG +Q +LEL ++PY  +G+L+
Sbjct: 68  PDALDVAGTVVDPLTELAAHAADTPTVVLPLLHGPHGEDGTIQGMLELFKLPYVGAGVLS 127

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL-------ISPPYVIKPLKGGSSL 139
           SAL MDK  +K V +  G+P C  +       D   +       +  P  +KP   GSS+
Sbjct: 128 SALCMDKAMAKVVAAQAGIPQCRWLEFRDGVDDPNTIVADAVGQLGLPIFVKPANLGSSV 187

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD--VTEIAVPKS 197
           GI     +  +  D   + +  + + +++E+ V G E+   V+GD + +  V     P S
Sbjct: 188 GITKAHDEAEL--DTAINVALRYDNVVILEEAVTGREVEVAVLGDTAPETSVPGEIEPGS 245

Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
           +FY YE KY +  +  V+PA +  +   +V+ LA     A+ C G++R DF ++   R  
Sbjct: 246 EFYDYEDKYITGAAKLVIPAPLSEEATAQVRELASKTFTAMRCTGMARVDFFYEESGRGW 305

Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              E+N  PG TP S++P++    G S+ +L+  +V  A
Sbjct: 306 LLNEVNTIPGFTPGSMYPKLWEATGISYPDLIDQLVTFA 344


>gi|222085556|ref|YP_002544086.1| D-alanine-D-alanine ligase protein [Agrobacterium radiobacter K84]
 gi|221723004|gb|ACM26160.1| D-alanine-D-alanine ligase protein [Agrobacterium radiobacter K84]
          Length = 355

 Score =  308 bits (790), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 93/349 (26%), Positives = 164/349 (46%), Gaps = 53/349 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50
           +AVL GG SSE +VSL S +    A++   +++  I + R    +L  L+          
Sbjct: 7   VAVLFGGQSSEHDVSLMSARNVIKAIDVDKYEIVPIVIRRDGQWLLTALEGGALPDPVVY 66

Query: 51  -----------------------------PDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81
                                         D+ F VLHG +GEDG +Q +  ++ +P   
Sbjct: 67  AGSEVCLLPGGKGRILAVGDPTGPRELPAIDILFPVLHGLYGEDGSIQGLARMVGVPLVG 126

Query: 82  SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT----MDSQHLISPPYVIKPLKGGS 137
            GIL SA ++DK  +K+++   G+PV  SI V         ++   +  P  +KP++ GS
Sbjct: 127 CGILGSATAIDKDIAKRLLRDAGLPVARSITVRPGDTLSFEEAASALGSPVFVKPVRQGS 186

Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG--DASLDVTEIAVP 195
           S+G+      +     L++  ++ H D++LIE++V   E+ C V+   D +L V+     
Sbjct: 187 SVGVSKAANAEEFRAALIE--AFKHDDKVLIEEFVKAREIECAVLEQTDGTLFVSLPGEI 244

Query: 196 ----KSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
                  FY+Y+ KY     +   +PA++P D+ + ++ L+  A +A+GC G++R DF  
Sbjct: 245 VTGQDHSFYTYDAKYIDEDGAITSVPAQLPADLTQHLRELSLDAFRALGCEGLARVDFFV 304

Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
            P    +   E+N  PG T +S++P+     G S+  L+  ++E     
Sbjct: 305 RP-DMSMVVNEVNTMPGFTNISMYPKAMEATGISYPALVDRLIEHGLAR 352


>gi|262193685|ref|YP_003264894.1| D-alanine/D-alanine ligase [Haliangium ochraceum DSM 14365]
 gi|262077032|gb|ACY13001.1| D-alanine/D-alanine ligase [Haliangium ochraceum DSM 14365]
          Length = 330

 Score =  308 bits (790), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 100/299 (33%), Positives = 165/299 (55%), Gaps = 9/299 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID--VDRSVGLVLAHLKPDLAFNVL 58
           + VL GG SSEREVSL SG    +AL++ G++   +D     S+  +L   + ++ +N L
Sbjct: 26  VGVLYGGPSSEREVSLESGAGVLAALQERGYECVGVDWTPGSSLPALLVEHRVEVVWNAL 85

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
           HG +GEDG VQ +   + +P T + I ASA++MDK+ SK++  S GVP     ++     
Sbjct: 86  HGTYGEDGAVQGLCACMGLPCTGASIAASAVAMDKILSKRLFESVGVPTPQWRVLRPDEG 145

Query: 119 DSQHLI---SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175
           D+  +    + P VIKP   GSS+G+ ++++   I   L ++ +      +L+E+Y++G+
Sbjct: 146 DTAAVFAEWALPLVIKPAYEGSSVGLSLVRERDEIGPALKRARAGQ--GPVLVERYIEGV 203

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
           EL+ G++ D  L   EI  P S  Y YE KY   ++  ++P ++        + L   A+
Sbjct: 204 ELSVGILADRVLGAVEIR-PTSGLYDYEAKYVRDDTAFLVPPELERGHIDTCEALGLRAY 262

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            A+GC G +R+D          F LE+N  PGMT  S+ P++AA+AG  +  L   ++E
Sbjct: 263 HALGCTGYARADLRV-QADGSAFILEVNTLPGMTSHSLLPKVAAHAGVDYPTLCERILE 320


>gi|31794157|ref|NP_856650.1| D-alanyl-alanine synthetase A [Mycobacterium bovis AF2122/97]
 gi|39930832|sp|Q7TXH9|DDL_MYCBO RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|31619752|emb|CAD96692.1| PROBABLE D-ALANINE--D-ALANINE LIGASE DDLA (D-ALANYLALANINE
           SYNTHETASE) (D-ALA-D-ALA LIGASE) [Mycobacterium bovis
           AF2122/97]
          Length = 370

 Score =  308 bits (790), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 101/360 (28%), Positives = 165/360 (45%), Gaps = 65/360 (18%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD-------- 52
           +AV+ GG S+E  +S  S  +    L+   F V  + +  +   VL    PD        
Sbjct: 10  VAVVFGGRSNEHAISCVSAGSILRNLDSRRFDVIAVGITPAGSWVLTDANPDALTITNRE 69

Query: 53  ---------------------------------------LAFNVLHGNFGEDGLVQAILE 73
                                                  + F VLHG +GEDG +Q +LE
Sbjct: 70  LPQVKSGSGTELALPADPRRGGQLVSLPPGAGEVLESVDVVFPVLHGPYGEDGTIQGLLE 129

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQ--HLISPPYV 129
           L  +PY  +G+LASA+ MDK  +K+++++ G+PV    ++   R T+  Q    +  P  
Sbjct: 130 LAGVPYVGAGVLASAVGMDKEFTKKLLAADGLPVGAYAVLRPPRSTLHRQECERLGLPVF 189

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG--DASL 187
           +KP +GGSS+G+  +     +P  +  + +  H  ++++E  + G EL CGV+   D +L
Sbjct: 190 VKPARGGSSIGVSRVSSWDQLPAAV--ARARRHDPKVIVEAAISGRELECGVLEMPDGTL 247

Query: 188 DVT---EIAVP-----KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
           + +   EI V      +  FY +  KY    +   +PAK+   + + +++LA  A  AI 
Sbjct: 248 EASTLGEIRVAGVRGREDSFYDFATKYLDDAAELDVPAKVDDQVAEAIRQLAIRAFAAID 307

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
           CRG++R DF            EIN  PG T +S++P M A +G  +  LL  M+E A   
Sbjct: 308 CRGLARVDFFLT--DDGPVINEINTMPGFTTISMYPRMWAASGVDYPTLLATMIETALAR 365


>gi|326385117|ref|ZP_08206786.1| D-alanine/D-alanine ligase [Gordonia neofelifaecis NRRL B-59395]
 gi|326196150|gb|EGD53355.1| D-alanine/D-alanine ligase [Gordonia neofelifaecis NRRL B-59395]
          Length = 357

 Score =  308 bits (790), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 94/338 (27%), Positives = 162/338 (47%), Gaps = 44/338 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------------------- 40
           + VL GG+S+E +VS  S     +A + + +++  + +D+                    
Sbjct: 8   LVVLYGGVSAEHDVSRVSAAHVLAAADRSKYQLIPVGIDKRGAWHRNDAAAEALAAGAEL 67

Query: 41  -----------SVGLVLAHLKPD--LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87
                      +   VLA    D  + F +LHG  GEDG VQ +LEL ++PY   G+LAS
Sbjct: 68  PNSLDVDGPEVNPLQVLAGSPEDLTVVFPLLHGPHGEDGTVQGMLELFKLPYIGCGVLAS 127

Query: 88  ALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD-------SQHLISPPYVIKPLKGGSSLG 140
           ++ MDK  +K+V +   +P C  +       D       +   +  P  +KP   GSS+G
Sbjct: 128 SVCMDKAMAKEVAARAEIPQCKWLTFRDGVDDPRQILTDAADQLGFPMFVKPANMGSSVG 187

Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV--PKSD 198
           +   +  + +  D   + +  + D ++IE+ V G E+   V+G+A+ D +      P S+
Sbjct: 188 VSRAETLEEL--DAAINVALRYDDVVVIEEAVVGREIEVAVLGNAAPDASLPGEVKPGSE 245

Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
           FY YE KY +  +  ++PA +  +   +V+ LA  A  A+ C G++R DF ++   R   
Sbjct: 246 FYDYEDKYITGAAELMIPAPLSDEAIADVRELAADAFVALRCAGLARVDFFYEEGGRGWL 305

Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             E+N  PG TP S++P+M    G  + +L+  +V  A
Sbjct: 306 LNEVNTIPGFTPASMYPKMWEATGIGYSDLIDRLVTLA 343


>gi|283850409|ref|ZP_06367698.1| D-alanine/D-alanine ligase [Desulfovibrio sp. FW1012B]
 gi|283574435|gb|EFC22406.1| D-alanine/D-alanine ligase [Desulfovibrio sp. FW1012B]
          Length = 304

 Score =  308 bits (790), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 107/302 (35%), Positives = 156/302 (51%), Gaps = 8/302 (2%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSV-GLVLAHLKPDLAFNVLHGN 61
           ++ GG SSEREVSLS       AL   G KV   D+     G V A    D AF  LHG 
Sbjct: 5   LVAGGWSSEREVSLSGAAQIEKALLALGHKVVPFDLSHDFPGFVAAAQACDFAFLNLHGA 64

Query: 62  FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD-S 120
            GEDGL QA+L+   +PY  SG   S L+++K  SKQ+    G+    S  +     D  
Sbjct: 65  PGEDGLPQALLDTAGVPYQGSGPAGSFLALNKAASKQLFRQAGLATPRSAFLPTPPGDGF 124

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
                PP+ +KP  GGSS+ + +++    +P  L  + ++  GD  L+E+ + G ELTC 
Sbjct: 125 VPDFGPPWFVKPTSGGSSVSMTLVRDPADLPEAL--ARAFASGDTALVEEGLAGPELTCA 182

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V+GD +L    I     +F+ Y  KY    +  + PA +P  +  E+ R++  AH+A+G 
Sbjct: 183 VLGDEALPPILIRPKAGEFFDYASKYELDAAEEICPAPVPDTLVAELGRISLAAHKALGL 242

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE--DASC 298
            G SR+DF+          LE+N  PGMT  S+ P+ A  AG SF +L+  ++E   A C
Sbjct: 243 SGYSRADFIHTESG--PMLLEVNTLPGMTRTSLLPKSAQAAGLSFPDLIARLMELGLARC 300

Query: 299 LR 300
            +
Sbjct: 301 GK 302


>gi|27468599|ref|NP_765236.1| D-alanyl-alanine synthetase A [Staphylococcus epidermidis ATCC
           12228]
 gi|38257332|sp|Q8CRP5|DDL_STAES RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|27316146|gb|AAO05280.1|AE016749_226 D-alanine-D-alanine ligase [Staphylococcus epidermidis ATCC 12228]
 gi|329726112|gb|EGG62584.1| D-ala D-ala ligase N-terminal domain protein [Staphylococcus
           epidermidis VCU144]
 gi|329734127|gb|EGG70445.1| D-ala D-ala ligase N-terminal domain protein [Staphylococcus
           epidermidis VCU045]
          Length = 357

 Score =  308 bits (789), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 82/339 (24%), Positives = 150/339 (44%), Gaps = 46/339 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           + ++ GG S+E +VS+ + +   +A++   ++V  I +                      
Sbjct: 6   ICIVFGGKSAEHDVSILTAQNVLNAIDKERYQVDIIYITNDGEWKKKDNITQEIKNTDEL 65

Query: 49  --------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
                                  D  F +LHG  GEDG +Q + E+L+IPY  +G+LA++
Sbjct: 66  VINDVETGEISQLLSKGSLGKSYDAVFPLLHGPNGEDGTIQGLFEVLDIPYVGNGVLAAS 125

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSL 139
            SMDK+  KQ+    G+P  P I   R   +             ++ P  +KP   GSS+
Sbjct: 126 SSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYENNIIKLVNDKLTYPVFVKPANLGSSV 185

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKS 197
           GI     ++ +   +  + ++    +L+IEQ ++  E+   V+G+   + T     V   
Sbjct: 186 GISKCNNEEELKSGI--TEAFQFDRKLVIEQGINAREIEVAVLGNDYPETTWPGEVVKDV 243

Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
            FY Y+ KY        +PA +  D+   ++ +A  A +A  C G+ R+DF       ++
Sbjct: 244 AFYDYKSKYKDGKIRLDIPADLDQDVQMTLRNMALEAFKATDCSGLVRADFFVT-DDNQI 302

Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +  E N  PG T  S++P +    G S+ +L+  +++ A
Sbjct: 303 YINETNAMPGFTAYSMYPNLWKNMGLSYPDLIAKLIDLA 341


>gi|197285102|ref|YP_002150974.1| D-alanine:D-alanine ligase A [Proteus mirabilis HI4320]
 gi|227355529|ref|ZP_03839924.1| D-alanine:D-alanine ligase A [Proteus mirabilis ATCC 29906]
 gi|229485975|sp|B4ETX3|DDL_PROMH RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|194682589|emb|CAR42650.1| D-alanine:D-alanine ligase A [Proteus mirabilis HI4320]
 gi|227164325|gb|EEI49214.1| D-alanine:D-alanine ligase A [Proteus mirabilis ATCC 29906]
          Length = 366

 Score =  308 bits (789), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 88/348 (25%), Positives = 156/348 (44%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44
           +A++ GG S+E +VSL S K   + L+   F +  I ++                     
Sbjct: 6   VAIIFGGKSTEHQVSLQSAKNIINELDRTKFDLCLIGINEQGQWHEYAEDNYLINSDNPS 65

Query: 45  -----------------------VLAHLKP----DLAFNVLHGNFGEDGLVQAILELLEI 77
                                   L   +P    D+ F ++HG +GEDG +Q +L ++++
Sbjct: 66  TISLSQPLRPVAIIPGSTRQQFISLTDGQPLAQIDVVFPIVHGAYGEDGTLQGLLHMIDM 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ------HLISPPYVIK 131
           PY    I++SA  MDK  +K+++   G+ V P I +    ++          +  P  IK
Sbjct: 126 PYVGPNIMSSAACMDKDITKRLLDDAGLAVAPFITLMAHQLNDISYNEVVEQLGLPLFIK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+GI  +  +      L  S ++ +  +++IE  + G E+ C V+G+   +V+ 
Sbjct: 186 PANLGSSVGISKVNNEAEFNAAL--SMAFEYDLKVIIESAIVGREIECAVLGNEEPEVSP 243

Query: 192 IA--VPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               V    FY+Y  KY   +    V+PA +   I   +++ A  A+Q + C G+SR D 
Sbjct: 244 CGEIVLNDAFYAYNTKYIDDDGAKVVVPADLDNAISLHIRQTALKAYQVLNCLGMSRVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                  +V   EIN  PG T +S++P++    G  ++ L+  ++E A
Sbjct: 304 FLTE-DNQVIINEINTLPGFTNISMYPKLWQSTGLDYQSLITKLIELA 350


>gi|289423749|ref|ZP_06425544.1| D-alanine--D-alanine ligase B [Peptostreptococcus anaerobius 653-L]
 gi|289155788|gb|EFD04458.1| D-alanine--D-alanine ligase B [Peptostreptococcus anaerobius 653-L]
          Length = 300

 Score =  308 bits (789), Expect = 8e-82,   Method: Composition-based stats.
 Identities = 96/299 (32%), Positives = 147/299 (49%), Gaps = 7/299 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG+SSEREVSL+SGKA    L+   + V    +D    +       DLA   LHG
Sbjct: 4   IAVLYGGVSSEREVSLNSGKAMIDNLDKNKYDVIDFRIDSKDDIFKLDKDIDLALIGLHG 63

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL---VNRFT 117
            FGEDG +QA+LE + I Y+    L S + MDK  +K +    GV      +   V+   
Sbjct: 64  KFGEDGSIQAVLETMGINYSGCNPLTSGILMDKNFTKIIARENGVKTANWAIVKSVDAID 123

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            D    I  P  IKP  GGSS+   ++K    +   +++  ++ + D ++IE+Y+ GIE 
Sbjct: 124 YDKIDEIGYPVFIKPNSGGSSVATNLVKSKDQVESAVIE--AFKYDDIVMIEEYIKGIEH 181

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           T  ++         I     +F+ YE KYS+ N       ++   + K ++  +      
Sbjct: 182 TSFILNGEVFPTIRI-TSDHEFFDYEAKYSTSNGAREEVVELEESVAKTLEDTSRTCWDI 240

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             CRG  R+D++      +V+ LEIN  PGMT  S+ P+ A   G  +  LL  ++E A
Sbjct: 241 YNCRGYVRADYIITE-DNQVYLLEINTLPGMTETSLIPKSAKARGIDYSGLLDKLIESA 298


>gi|294631605|ref|ZP_06710165.1| D-alanine-D-alanine ligase [Streptomyces sp. e14]
 gi|292834938|gb|EFF93287.1| D-alanine-D-alanine ligase [Streptomyces sp. e14]
          Length = 385

 Score =  308 bits (789), Expect = 8e-82,   Method: Composition-based stats.
 Identities = 103/363 (28%), Positives = 159/363 (43%), Gaps = 71/363 (19%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +AV+ GG SSE  +S+ +  A   A++ + ++V  I +       L    P         
Sbjct: 19  VAVVCGGRSSEHGISVVTAGAVLRAIDRSKYEVLPIGITTDGRWALTADDPERMAITDRR 78

Query: 52  -----------------------------------------DLAFNVLHGNFGEDGLVQA 70
                                                    D+ F VLHG +GEDG +Q 
Sbjct: 79  TPSVDELAESTEGGVVLPVDPHNREVVYSEPGSVPKALGEVDVVFPVLHGPYGEDGTLQG 138

Query: 71  ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI------ 124
           +LEL  +PY  SG+LASA+  DK   K+V +S G+ V P +++     D           
Sbjct: 139 LLELSGVPYVGSGVLASAVGQDKEYMKRVFTSFGLRVGPYVVIRPREWDRDPAAARKKVV 198

Query: 125 ------SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                   P  +KP + GSS+GI  +  D    LD     +  H  ++L+E  V G E+ 
Sbjct: 199 DFAGEHGWPLFVKPARAGSSIGITKV--DGLAGLDEAIEEARRHDPKVLVEAAVRGREIE 256

Query: 179 CGVM----GDASLDVTEIAVP-KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           CGV+    G  +    EI  P +  +Y +E KY   ++  V+PA +  +   EV+RLA  
Sbjct: 257 CGVLEFEDGPRASVPAEIPPPQEHAYYDFEAKY-IDSTPGVVPAPLTEEQTAEVRRLAVE 315

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           A +A  C G+ R+DF            EIN  PG TP+S++P+M    G S+ EL+  ++
Sbjct: 316 AFEAASCEGLVRADFFL-AEDGGFVINEINTMPGFTPISMYPKMWEATGVSYEELVDRLI 374

Query: 294 EDA 296
           + A
Sbjct: 375 QAA 377


>gi|118468335|ref|YP_886735.1| D-alanyl-alanine synthetase A [Mycobacterium smegmatis str. MC2
           155]
 gi|6919860|sp|Q9ZGN0|DDL_MYCSM RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|166198492|sp|A0QUZ7|DDL_MYCS2 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|4092035|gb|AAC99396.1| D-alanine:D-alanine ligase [Mycobacterium smegmatis]
 gi|118169622|gb|ABK70518.1| D-alanine--D-alanine ligase [Mycobacterium smegmatis str. MC2 155]
          Length = 373

 Score =  308 bits (789), Expect = 8e-82,   Method: Composition-based stats.
 Identities = 104/360 (28%), Positives = 164/360 (45%), Gaps = 65/360 (18%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +AV+ GG SSE  +S  S  +    L+   F+V  I +      VL   +P         
Sbjct: 13  VAVVYGGRSSEHAISCVSAGSILRNLDPERFEVVAIGITPDGSWVLTDGRPETLAITDGK 72

Query: 52  --------------------------------------DLAFNVLHGNFGEDGLVQAILE 73
                                                 D+ F VLHG +GEDG +Q +LE
Sbjct: 73  LPAVTEASGTELALPAAPNRSGQLLALGNGPGEILAAVDVVFPVLHGPYGEDGTIQGLLE 132

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF----TMDSQHLISPPYV 129
           L  +PY  SG+LASA  MDK  +K+++++ G+P+   +++        ++ +  +  P  
Sbjct: 133 LAGVPYVGSGVLASAAGMDKEYTKKLLAAEGLPIGDQVVLRPGVETLDLEQRERLGLPVF 192

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG--DASL 187
           +KP +GGSS+G+  +     +P  +    +  H  ++++E  V G EL CGV+   D  L
Sbjct: 193 VKPARGGSSIGVSRVTAWDELPAAVAL--ARRHDPKVIVEAAVIGRELECGVLEFPDGRL 250

Query: 188 D---VTEIAVP-----KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
           +   V EI V      +  FY +  KY    +   +PAK+  D+  E+++LA  A  AIG
Sbjct: 251 EASTVGEIRVAGVRGREDGFYDFATKYLEDAAELDVPAKVDDDVADEIRQLAVRAFTAIG 310

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
           C+G++R DF            EIN  PG T +S++P M A  G  +  LL  MV+ A   
Sbjct: 311 CQGLARVDFFLT--DDGPVINEINTMPGFTTISMYPRMWAAGGIDYPTLLAAMVDTAIAR 368


>gi|308068770|ref|YP_003870375.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)
           (D-Ala-D-Ala ligase) [Paenibacillus polymyxa E681]
 gi|305858049|gb|ADM69837.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)
           (D-Ala-D-Ala ligase) [Paenibacillus polymyxa E681]
          Length = 309

 Score =  308 bits (789), Expect = 8e-82,   Method: Composition-based stats.
 Identities = 94/305 (30%), Positives = 163/305 (53%), Gaps = 10/305 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQ--IDVDRSVGLVLAHLKPDLAFNVL 58
           + V+MGGISSERE+SL +G+   + L+ + ++V    I+    +   +     D+A   L
Sbjct: 3   IGVIMGGISSEREISLQTGQEMINHLDRSRYEVVPMVIEQRADLITQVQQAGIDIAMLAL 62

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL---VNR 115
           HG +GEDG VQ  LE L IPYT SG+LAS+L M+K  SK ++ + GV     +    ++ 
Sbjct: 63  HGQYGEDGTVQGALETLGIPYTGSGVLASSLCMNKQLSKTLLKAAGVHTPAGLCWQGMDD 122

Query: 116 FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175
           +       +  P ++KP  GGSS+GI +++ ++ +   + ++ S      +LIE Y  G 
Sbjct: 123 YDPQVVERLGYPVIVKPNTGGSSIGIQLVQNEKELLPAVQEACSL--DQAILIEPYYKGT 180

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
           E+TC ++    L +  I+   S ++ Y+ KY    +      ++P  I + V+  A  ++
Sbjct: 181 EITCSIVDGEVLPIISISSAHSKWFDYKAKYEVGGAEE-KVVELPPVIEQRVREAALASY 239

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           + + C+  +R D +      + + LE+N  PGMT  S+ P+ AA AG +F +LL  ++  
Sbjct: 240 RLLQCKVYARVDMIL--CQDRPYVLEVNTLPGMTANSLLPKSAAAAGITFTQLLDHIIAS 297

Query: 296 ASCLR 300
           +   R
Sbjct: 298 SLHER 302


>gi|293366048|ref|ZP_06612736.1| D-alanine-D-alanine ligase [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|291319771|gb|EFE60129.1| D-alanine-D-alanine ligase [Staphylococcus epidermidis
           M23864:W2(grey)]
          Length = 362

 Score =  308 bits (789), Expect = 8e-82,   Method: Composition-based stats.
 Identities = 82/339 (24%), Positives = 150/339 (44%), Gaps = 46/339 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           + ++ GG S+E +VS+ + +   +A++   ++V  I +                      
Sbjct: 11  ICIVFGGKSAEHDVSILTAQNVLNAIDKERYQVDIIYITNDGEWKKKDNITQEIKNTDEL 70

Query: 49  --------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
                                  D  F +LHG  GEDG +Q + E+L+IPY  +G+LA++
Sbjct: 71  VINDVETGEISQLLSKGSLGKSYDAVFPLLHGPNGEDGTIQGLFEVLDIPYVGNGVLAAS 130

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSL 139
            SMDK+  KQ+    G+P  P I   R   +             ++ P  +KP   GSS+
Sbjct: 131 SSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYENNIIKLVNDKLTYPVFVKPANLGSSV 190

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKS 197
           GI     ++ +   +  + ++    +L+IEQ ++  E+   V+G+   + T     V   
Sbjct: 191 GISKCNNEEELKSGI--TEAFQFDRKLVIEQGINAREIEVAVLGNDYPETTWPGEVVKDV 248

Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
            FY Y+ KY        +PA +  D+   ++ +A  A +A  C G+ R+DF       ++
Sbjct: 249 AFYDYKSKYKDGKIRLDIPADLDQDVQMTLRNMALEAFKATDCSGLVRADFFVT-DDNQI 307

Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +  E N  PG T  S++P +    G S+ +L+  +++ A
Sbjct: 308 YINETNAMPGFTAYSMYPNLWKNMGLSYPDLIAKLIDLA 346


>gi|312140476|ref|YP_004007812.1| d-alanine-d-alanine ligase [Rhodococcus equi 103S]
 gi|311889815|emb|CBH49132.1| D-alanine-D-alanine ligase [Rhodococcus equi 103S]
          Length = 368

 Score =  308 bits (789), Expect = 8e-82,   Method: Composition-based stats.
 Identities = 100/360 (27%), Positives = 163/360 (45%), Gaps = 65/360 (18%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +AV+ GG S+E  VS  S  +    L+   ++V  I +      VL    P         
Sbjct: 8   VAVVFGGRSNEHSVSCVSAGSVLRNLDPDRYEVVPIGITTDGAWVLGSTDPADLAIRDRS 67

Query: 52  --------------------------------------DLAFNVLHGNFGEDGLVQAILE 73
                                                 D+ F VLHG +GEDG +Q +LE
Sbjct: 68  MPTVDAGGKALTLTADPTRAGAVVALDDKQAGQALASVDVVFPVLHGAYGEDGTIQGLLE 127

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF----TMDSQHLISPPYV 129
           L  IPY   G+LASA  MDK  +K+++++ G+PV   +++       T + +  +  P  
Sbjct: 128 LAGIPYVGPGVLASAAGMDKEFTKKLLAAEGLPVGFQVVLRPGTSTVTDEQKQQLGLPVF 187

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM----GDA 185
           +KP +GGSS+GI  +        D   + + +H  ++++E  + G E+ CGV+    GD 
Sbjct: 188 VKPARGGSSIGITRV--ADWSQFDAAVAVARSHDPKVIVESAIVGREVECGVLEFPDGDV 245

Query: 186 SLDVT-EIAVPKSD-----FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
              V  EI +P +D     FY ++ KY        +PAK+  D+ ++++ LA  A +A+ 
Sbjct: 246 RASVVAEIRMPDTDGDESAFYDFDTKYLDDVCEFDVPAKLDDDVSEQIRALAVRAFRALD 305

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
           C+G++R DF            EIN  PG T +S++P M   AG  +  L+  +V+ A   
Sbjct: 306 CQGLARVDFFVTADG--PVINEINTMPGFTSISMYPRMWQAAGVEYETLVSTLVDTAVAR 363


>gi|238764550|ref|ZP_04625497.1| D-alanine--D-alanine ligase [Yersinia kristensenii ATCC 33638]
 gi|238697252|gb|EEP90022.1| D-alanine--D-alanine ligase [Yersinia kristensenii ATCC 33638]
          Length = 359

 Score =  308 bits (789), Expect = 9e-82,   Method: Composition-based stats.
 Identities = 91/345 (26%), Positives = 156/345 (45%), Gaps = 55/345 (15%)

Query: 4   LMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP---- 51
           + GG S+E EVSL S K    A++   F+V+ + +D+            +L    P    
Sbjct: 2   IFGGKSAEHEVSLQSAKNIVDAIDKEKFEVTLLGIDKQGKWHINDASSYLLNAEHPALIS 61

Query: 52  -------------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYT 80
                                          D+ F ++HG  GEDG +Q +L +  IP+ 
Sbjct: 62  LNHSNKNVALILGQESQQLIATDNAAALAQLDVIFPIVHGTLGEDGSLQGLLRMANIPFV 121

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVIKPLK 134
            SG++ SA+SMDK  +K+++   G+ + P I + R   DS         +  P  IKP  
Sbjct: 122 GSGVVGSAVSMDKDITKRLLRDAGLNIAPFITLTRGNKDSYCFEKITEKLGLPLFIKPAN 181

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI-- 192
            GSS+G+  ++        +  +  ++H  ++L+E  + G E+ C VMG+ +   +    
Sbjct: 182 QGSSVGVSKVRNAAEYEQAVALAFDFDH--KVLVESAIVGREIECAVMGNDNPQASLCGE 239

Query: 193 AVPKSDFYSYELKYSSL-NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
            V   +FYSY+ KY +   +  ++PA I       ++ +A    +A+ C G++R D    
Sbjct: 240 VVISDEFYSYDTKYINETGAQVIIPAAIDSAASDNIRTVALATFRALECCGMARVDVFLT 299

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           P    V   EIN  PG T +S++P++    G    EL+  ++E A
Sbjct: 300 P-DNHVIINEINTLPGFTNISMYPKLWRATGVGSTELITTLIELA 343


>gi|269926708|ref|YP_003323331.1| D-alanine/D-alanine ligase [Thermobaculum terrenum ATCC BAA-798]
 gi|269790368|gb|ACZ42509.1| D-alanine/D-alanine ligase [Thermobaculum terrenum ATCC BAA-798]
          Length = 362

 Score =  308 bits (789), Expect = 9e-82,   Method: Composition-based stats.
 Identities = 99/340 (29%), Positives = 163/340 (47%), Gaps = 49/340 (14%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP----------- 51
           +L GG S+E +VS++S  +   AL+D+   +    + R     +                
Sbjct: 8   LLFGGRSAEHDVSVASAISMMKALKDSDIDILPCGITREGTWKVGEEAVKMLASSALFAG 67

Query: 52  ------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87
                                   D+ F +LHG +GEDG VQ  LEL+ +PY  SG+L S
Sbjct: 68  DSDVRDIVPVDSQPRSVPEALSAVDVVFPLLHGPYGEDGTVQGFLELVNVPYVGSGVLGS 127

Query: 88  ALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPLKGGSS 138
           +LSMDK+  K++  S G+P+   + + R              +  +  P  +KP   GSS
Sbjct: 128 SLSMDKIAMKKMFESEGLPITRYLGILRSDWLSDPEGIISKIESELEYPVFVKPANLGSS 187

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--DVTEIAVPK 196
           +GI   K   S+   L  +S   +  +L++EQ V+  EL C V+G+      V    +P 
Sbjct: 188 IGITKAKDRSSLLQALELAS--KYDRRLIVEQGVEARELECAVLGNDYPRASVVGEILPG 245

Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256
            +FY++E KY S +S  ++PA IP  +  E++  A  A +A+   G++R DF       K
Sbjct: 246 DEFYTFEAKYISESSKTIIPADIPPSVSDEIRDYAVRAFKAVDAAGLARVDFFLT-SENK 304

Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           V   EIN  PG TP+S++P++   +G S+ +L+  +++ A
Sbjct: 305 VLVNEINTIPGFTPISMYPKLWEASGLSYPDLVRKLLDLA 344


>gi|254448997|ref|ZP_05062451.1| D-alanine--D-alanine ligase [gamma proteobacterium HTCC5015]
 gi|198261391|gb|EDY85682.1| D-alanine--D-alanine ligase [gamma proteobacterium HTCC5015]
          Length = 310

 Score =  308 bits (789), Expect = 9e-82,   Method: Composition-based stats.
 Identities = 95/298 (31%), Positives = 153/298 (51%), Gaps = 7/298 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + +L GG ++EREVSL SG AC +ALE +  + + +D      L L+    D A NV+HG
Sbjct: 14  VVLLKGGWAAEREVSLVSGAACEAALERSNIEFTSVDASPEAILQLSAQNFDRALNVVHG 73

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTM 118
             GEDG +QA L L  IP + S +L SAL+MDK+R+K + +  G+P      +      +
Sbjct: 74  RGGEDGQLQAALSLAGIPCSGSDVLGSALAMDKLRTKYLWAGAGLPTPLYRQIGSVEEAL 133

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                +  P ++KP   GSS+G+  +   + +      ++ +    ++  EQ++ G E T
Sbjct: 134 SVAEELGLPLMVKPALEGSSIGMSKVNDVEDMAAAYELAAQY---GEVFAEQWIVGKEYT 190

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             ++GD +L +  +     DFY Y  KY   ++ +  P  +     + +Q LA  A   +
Sbjct: 191 AAILGDETLPLVRLET-DQDFYDYAAKYERNDTRYHCPCGLDDTAERNLQHLAQQAFDTV 249

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           G  G  R D + D    + + +E+N  PGMT  S+ P  A  AG SF EL+L ++  A
Sbjct: 250 GASGWGRVDLMVDEA-GQPWLIEVNTVPGMTDHSLVPMAAKQAGMSFDELVLRILMTA 306


>gi|332798369|ref|YP_004459868.1| D-alanine--D-alanine ligase [Tepidanaerobacter sp. Re1]
 gi|332696104|gb|AEE90561.1| D-alanine--D-alanine ligase [Tepidanaerobacter sp. Re1]
          Length = 363

 Score =  308 bits (789), Expect = 9e-82,   Method: Composition-based stats.
 Identities = 87/347 (25%), Positives = 158/347 (45%), Gaps = 53/347 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           + ++ GG S E EVSL S  +    ++   + +  I + +     L              
Sbjct: 6   VGIIFGGQSGEHEVSLMSCVSVIQVMDKTKYDIIPIGITKKGNWKLFLGDISKIENGSWE 65

Query: 47  -------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81
                                    +    D+ F VLHG  GEDG VQ++ EL+ IPY  
Sbjct: 66  DEAIPALLSPDPSCKCVITLKDGMESRYYLDVVFPVLHGPRGEDGTVQSLFELMNIPYVS 125

Query: 82  SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKP 132
            G+ +SA+ MDK+ SK+++   G+P+       +  +         + +  +  P  +KP
Sbjct: 126 CGVTSSAICMDKVFSKKILEQSGLPIVDYKAFYKRELLARMPEIISEVEEFLGYPCFVKP 185

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192
              GSS+GI        +   +  ++   +  ++L+E+++D  E+ C V+G+   + +  
Sbjct: 186 ANLGSSVGISKAGGPSELESAMRLAT--QYDTKILVERFIDAREIECAVLGNDEPNASLP 243

Query: 193 A--VPKSDFYSYELKYSSLN-STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
              +P  DFY Y  KY   + S  +LPA +       +Q LA  A + + C G++R DFL
Sbjct: 244 GEIIPSRDFYDYTAKYLDGDKSKLLLPAPVSRKDITRIQELAIKAFKTLDCSGMARVDFL 303

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              +S  ++  E+N  PG T +S++P+M   +G S+++L+  ++  A
Sbjct: 304 MSKVSGNIYINELNTIPGFTRISMYPKMWEISGLSYKDLIDKLINLA 350


>gi|325675906|ref|ZP_08155590.1| D-alanine-D-alanine ligase [Rhodococcus equi ATCC 33707]
 gi|325553877|gb|EGD23555.1| D-alanine-D-alanine ligase [Rhodococcus equi ATCC 33707]
          Length = 368

 Score =  308 bits (789), Expect = 9e-82,   Method: Composition-based stats.
 Identities = 100/360 (27%), Positives = 163/360 (45%), Gaps = 65/360 (18%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +AV+ GG S+E  VS  S  +    L+   ++V  I +      VL    P         
Sbjct: 8   VAVVFGGRSNEHSVSCVSAGSVLRNLDPDRYEVVPIGITTDGAWVLGSTDPADLAIRDRS 67

Query: 52  --------------------------------------DLAFNVLHGNFGEDGLVQAILE 73
                                                 D+ F VLHG +GEDG +Q +LE
Sbjct: 68  MPTVDADGKALTLTADPTRAGAVVALDDKQAGQALASVDVVFPVLHGAYGEDGTIQGLLE 127

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF----TMDSQHLISPPYV 129
           L  IPY   G+LASA  MDK  +K+++++ G+PV   +++       T + +  +  P  
Sbjct: 128 LAGIPYVGPGVLASAAGMDKEFTKKLLAAEGLPVGFQVVLRPGTSTVTDEQKQQLGLPVF 187

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM----GDA 185
           +KP +GGSS+GI  +        D   + + +H  ++++E  + G E+ CGV+    GD 
Sbjct: 188 VKPARGGSSIGITRV--ADWSQFDAAVAVARSHDPKVIVESAIVGREVECGVLEFPDGDV 245

Query: 186 SLDVT-EIAVPKSD-----FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
              V  EI +P +D     FY ++ KY        +PAK+  D+ ++++ LA  A +A+ 
Sbjct: 246 RASVVAEIRMPDTDGDESAFYDFDTKYLDDVCEFDVPAKLDDDVSEQIRALAVRAFRALD 305

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
           C+G++R DF            EIN  PG T +S++P M   AG  +  L+  +V+ A   
Sbjct: 306 CQGLARVDFFVTADG--PVINEINTMPGFTSISMYPRMWQAAGVEYETLVSTLVDTAVAR 363


>gi|290957134|ref|YP_003488316.1| D-alanine-D-alanine ligase [Streptomyces scabiei 87.22]
 gi|260646660|emb|CBG69757.1| D-alanine-D-alanine ligase [Streptomyces scabiei 87.22]
          Length = 385

 Score =  307 bits (788), Expect = 9e-82,   Method: Composition-based stats.
 Identities = 100/363 (27%), Positives = 160/363 (44%), Gaps = 71/363 (19%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +AV+ GG SSE  +S+ +  A   A++   + V  I + R     L   +P         
Sbjct: 19  VAVVFGGRSSEHGISVVTAGAVLRAIDRTKYDVLPIGITREGRWFLTADEPERMAITDRR 78

Query: 52  -----------------------------------------DLAFNVLHGNFGEDGLVQA 70
                                                    D+ F VLHG +GEDG +Q 
Sbjct: 79  TPSVEELAESREGGVVLPVDPANREVVYSEPGSVPKALGEVDVVFPVLHGPYGEDGTLQG 138

Query: 71  ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM------------ 118
           +LEL  +PY  SG+LASA+  DK   K+V +S G+ V P +++                 
Sbjct: 139 MLELSGVPYVGSGVLASAVGQDKEYMKRVFTSFGLKVGPYVVIRPREWQLDEAAARKKII 198

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           D       P  +KP + GSS+GI  +  D    LD   + +  H  ++L+E  + G E+ 
Sbjct: 199 DLAGEHGWPLFVKPARAGSSIGITKV--DDLAGLDEAIAEAQRHDPKILVEAALRGREIE 256

Query: 179 CGVM----GDASLDVTEIAVPKSD-FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           CGV+    G  +    EI  P++  +Y ++ KY   ++  ++PA +  +   EV+RLA  
Sbjct: 257 CGVLEFEDGPRASVPAEIPPPETHAYYDFDAKY-IDSTPGIVPAPLTPEETAEVRRLAVD 315

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           A  A  C G+ R+DF       +    EIN  PG TP+S++P M   +G  + EL+  ++
Sbjct: 316 AFDAASCEGLVRADFFLTE-DGEFVINEINTLPGFTPISMYPAMWQASGIEYPELVDRLI 374

Query: 294 EDA 296
           + A
Sbjct: 375 QAA 377


>gi|229073690|ref|ZP_04206803.1| D-alanine--D-alanine ligase [Bacillus cereus F65185]
 gi|229079781|ref|ZP_04212314.1| D-alanine--D-alanine ligase [Bacillus cereus Rock4-2]
 gi|228703621|gb|EEL56074.1| D-alanine--D-alanine ligase [Bacillus cereus Rock4-2]
 gi|228709399|gb|EEL61460.1| D-alanine--D-alanine ligase [Bacillus cereus F65185]
          Length = 304

 Score =  307 bits (788), Expect = 9e-82,   Method: Composition-based stats.
 Identities = 90/303 (29%), Positives = 162/303 (53%), Gaps = 9/303 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGG+SSE++VS+ +G    + L+   +++  I ++  V L+      D A   LHG
Sbjct: 3   IGVIMGGVSSEKQVSIMTGNEMIAHLDKNKYEIVPITLNEKVDLIEKAKDIDFALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117
            +GEDG VQ  LE L IPY+ S +L+S++ MDK  SK+++   GV     I + +     
Sbjct: 63  KYGEDGTVQGTLESLGIPYSGSNMLSSSICMDKNISKKILRYEGVETPDWIELTKMEDLN 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
           +D    +  P V+KP  GGSS+G+ ++     +    +  + +    +++IE+Y+ G E+
Sbjct: 123 LDELDKLGFPLVVKPNSGGSSVGVKIVYNKNELIS--MLETVFEWDSEVVIEKYIKGDEI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC ++    L +  I    ++F+ Y  KY   ++   +  ++P +I + V + +   ++A
Sbjct: 181 TCSILDGKQLPIVSIR-HAAEFFDYNAKYDDTSTVEEV-IELPAEINERVNKASLACYKA 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           + C   +R D +        + +EIN  PGMT  S+ P+ A  AG S+ ELL  ++E + 
Sbjct: 239 LKCSVYARVDMMV--KDGIPYVMEINTLPGMTQSSLLPKSAEAAGISYSELLDMIIETSL 296

Query: 298 CLR 300
            +R
Sbjct: 297 KVR 299


>gi|331085322|ref|ZP_08334408.1| hypothetical protein HMPREF0987_00711 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330408105|gb|EGG87595.1| hypothetical protein HMPREF0987_00711 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 352

 Score =  307 bits (788), Expect = 9e-82,   Method: Composition-based stats.
 Identities = 91/343 (26%), Positives = 165/343 (48%), Gaps = 49/343 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS------------------- 41
           +AV+ GG SSE EVS  S     S ++   ++   I + +                    
Sbjct: 8   VAVIFGGQSSEHEVSCKSAVTVISHIDRTKYEPVLIGITKEGCWLKVEDTEAIRNDTWRE 67

Query: 42  ------------------VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                             +G  +  ++ D+ F VLHG +GEDG +Q + EL +IPY   G
Sbjct: 68  NGKRAILSPDAGEHGILVLGDTVEKIQVDVIFPVLHGMYGEDGTIQGLFELAKIPYVGCG 127

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--------QHLISPPYVIKPLKG 135
           +LASA+SMDK+ +K +V   G+     + ++ + ++         + ++  P  +KP K 
Sbjct: 128 VLASAVSMDKLYTKIIVDRLGIRQAKFVGIHAYELEEIDKVLDKVEEVLPYPVFVKPSKA 187

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195
           GSS G+   K  + +   LL+++   H  ++L+E+ + G E+ C V+G  ++  +++   
Sbjct: 188 GSSQGVNQAKDREELQAALLEAA--KHDTKILVEETIKGREIECAVLGGKNVKASDVGEI 245

Query: 196 K--SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
           K    FY+YE KY++ +S      ++P    ++V+  A    +A+   G+SR DF  +  
Sbjct: 246 KAADTFYTYEAKYNNPDSKTDTHPELPEGALEKVREDAVAIFKAVDGFGLSRVDFFLEHG 305

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           + +V + EIN  PG T +S++P +    G     L+  ++E A
Sbjct: 306 TNEVIFNEINTLPGFTNISMYPMLWREKGIDTTALVTELIELA 348


>gi|15599396|ref|NP_252890.1| D-alanine-D-alanine ligase A [Pseudomonas aeruginosa PAO1]
 gi|39931187|sp|Q9HWI0|DDLA_PSEAE RecName: Full=D-alanine--D-alanine ligase A; AltName:
           Full=D-Ala-D-Ala ligase A; AltName: Full=D-alanylalanine
           synthetase A
 gi|9950412|gb|AAG07588.1|AE004836_7 D-alanine-D-alanine ligase A [Pseudomonas aeruginosa PAO1]
          Length = 346

 Score =  307 bits (788), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 104/326 (31%), Positives = 160/326 (49%), Gaps = 37/326 (11%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50
           +AVL GG S ER+VS++SG     AL  AG +V  +D    +       +          
Sbjct: 8   VAVLFGGSSEERDVSIASGAQVIQALRSAGHQVLAVDTASGLLGAEEERRLLASKVKEVP 67

Query: 51  ------------------------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
                                    D+ F  LHG  GEDG +QA+L+     YT SG LA
Sbjct: 68  PDSDSLAIIRSGKQSLLSAGELAGVDVFFLALHGGTGEDGTLQALLDAGGFAYTGSGHLA 127

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           SA++MDK  +K++  + GV     ++      + +  +  P V+KP   GS++G+ ++  
Sbjct: 128 SAMAMDKDVAKRLFLAAGVETASWLMAPASEEEVREQLGFPLVVKPNSQGSTVGLSIVHS 187

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
              +   +  +    +GD++++E++V G E+T GV+ D +L V EI +   + + YE KY
Sbjct: 188 QAELQPAIELAG--RYGDEVMLERFVAGREVTVGVLDDQALPVGEILLGGQEVFDYEHKY 245

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
            +     V PA +P  I  E QRLA   H+A+   G SR+DF  D   R ++ LE+N  P
Sbjct: 246 QAGAVREVFPADLPPAIAAEAQRLALKVHRALKLSGYSRTDFRLDEQGR-LWCLEVNTLP 304

Query: 267 GMTPVSIFPEMAAYAGYSFRELLLWM 292
           GMT  S+ P+ AA AG  F EL   +
Sbjct: 305 GMTATSLLPQAAAAAGIGFAELCERI 330


>gi|328885299|emb|CCA58538.1| D-alanine--D-alanine ligase [Streptomyces venezuelae ATCC 10712]
          Length = 379

 Score =  307 bits (788), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 103/366 (28%), Positives = 160/366 (43%), Gaps = 71/366 (19%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +AV+ GG SSE  +S+ +  A  SA++   + V  I +       L    P         
Sbjct: 13  VAVVFGGRSSEHAISVVTAGAVLSAIDRDKYDVLPIGITTDGRWALTADAPERMAIADRA 72

Query: 52  -----------------------------------------DLAFNVLHGNFGEDGLVQA 70
                                                    D+ F +LHG +GEDG +Q 
Sbjct: 73  LPNVADLAESETGGVVLSVDPADRQVVLTEPGAVPKALGEVDVVFPMLHGPYGEDGTLQG 132

Query: 71  ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------- 120
           +LEL  +PY  +G+LASA+  DK   K+V  S G+PV P  ++     +           
Sbjct: 133 LLELSGVPYVGAGVLASAVGQDKEYMKRVFVSFGLPVGPYEVIRPREWEQNPAAARKKIV 192

Query: 121 --QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                   P  +KP +GGSS+GI  +  D    LD     +  H  ++L+E  + G E+ 
Sbjct: 193 EFAAEHGWPLFVKPARGGSSMGITKV--DDLSGLDEAIEEARRHDPKILVESLLRGREIE 250

Query: 179 CGVMG-----DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           CGV+       AS+      V   DFY +E KY   +++ ++PA I  +   E+QRLA  
Sbjct: 251 CGVLEFEDGPRASVPAEIPPVTNHDFYDFEAKY-IDSASGIVPAPIGDEATAEIQRLAVA 309

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           A++A+ C G+ R+DF            EIN  PG TP+S++P M   +G S+ EL+  ++
Sbjct: 310 AYEAVSCEGLVRADFFLTE-DGDFVINEINTMPGFTPISMYPRMWQESGVSYPELVDRLI 368

Query: 294 EDASCL 299
           + A   
Sbjct: 369 QAALTR 374


>gi|291166569|gb|EFE28615.1| D-alanine--D-alanine ligase [Filifactor alocis ATCC 35896]
          Length = 353

 Score =  307 bits (787), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 88/342 (25%), Positives = 161/342 (47%), Gaps = 48/342 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------------------- 40
           +A+L GG S E EVS  S K     ++   ++   I +D+                    
Sbjct: 6   IAILFGGKSEEHEVSCRSAKYIFENVDRDKYRPFLIGIDKLGNYYYMKECNIEHLIDCTW 65

Query: 41  ------------------SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
                             ++ L    +  D+ F  LHG  GEDG +Q ++E + IPY   
Sbjct: 66  TDFIETNEVCFSKGDERFTLQLQGEKIVFDVVFPALHGPNGEDGKLQGLMEFVNIPYVGC 125

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI-----SPPYVIKPLKGGS 137
             ++SA+ MDK  +K++V   GV   P +++    +  + L+       P  +KP   GS
Sbjct: 126 NSISSAICMDKEITKRLVGIEGVRQVPYVILYEGVVAEEKLLEMEEIGYPLFVKPANMGS 185

Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS---LDVTEIAV 194
           S+G+   +  Q +   +  +S   + D++++E+ +D +EL    +GD             
Sbjct: 186 SVGVSKAENQQELLQAIRVAS--KYDDKVIVEKGIDALELEIAALGDGKDAYFSTVGCIK 243

Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
           P+  FY Y+ KY + ++   +PA I  +   E++ +A  A+ A+ C G+SR DF  D  +
Sbjct: 244 PRDIFYDYDSKYLTNDADFYIPAPISFEKETELREMARKAYTAMLCEGLSRIDFFMDKET 303

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +++++ EIN  PG T +S++P++  Y G   +EL+  +++ A
Sbjct: 304 QEIYFNEINTMPGFTAISLYPQLMDYDGVGAKELIGRLIDYA 345


>gi|21672494|ref|NP_660561.1| D-alanine--D-alanine ligase [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
 gi|22654229|sp|O51927|DDL_BUCAP RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|21623113|gb|AAM67772.1| D-alanine--D-alanine ligase [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
          Length = 306

 Score =  307 bits (787), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 102/303 (33%), Positives = 165/303 (54%), Gaps = 13/303 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG SSER++S+ SG A   +L  +GF    ID      + L     D A+  LHG
Sbjct: 5   IAVLLGGNSSERKISIKSGYAILQSLLRSGFNAYAIDTRDFPIMQLKKQGFDSAYIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117
             GEDG +Q ILE L IPYT SGI++SA+S+DK R+K +  S  + V P I + +     
Sbjct: 65  TGGEDGSIQGILEYLNIPYTGSGIMSSAISLDKWRTKLLWKSLSLRVLPDIYLQKKDISK 124

Query: 118 ------MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +     +  P VIKP   GSS+GI ++     +   +  + ++N+ + ++IE++
Sbjct: 125 YTYSYILKKILKLKFPVVIKPNNAGSSIGITIVNHPDLLIDSI--NLAFNYSNNIIIEKF 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++    L   +I   K++FY Y  KY   ++ ++ P+ +     +E++++ 
Sbjct: 183 LKGTEYTVSILNKKVLPPIKIIT-KNNFYDYSSKYIESSTEYICPSGLNYQKEEELKKIV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
            +A  ++GC+G  R D + D    K + LEIN  PGMT  S+ P  A   G SF EL+L 
Sbjct: 242 EIAWNSLGCKGCGRIDAILDNKD-KFWLLEINTIPGMTHRSLVPMAAKSIGISFDELILK 300

Query: 292 MVE 294
           +++
Sbjct: 301 ILK 303


>gi|317486231|ref|ZP_07945065.1| D-alanine-D-alanine ligase [Bilophila wadsworthia 3_1_6]
 gi|316922530|gb|EFV43782.1| D-alanine-D-alanine ligase [Bilophila wadsworthia 3_1_6]
          Length = 299

 Score =  307 bits (787), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 99/296 (33%), Positives = 162/296 (54%), Gaps = 6/296 (2%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLA-HLKPDLAFNVLHGN 61
           +L GG S EREVSL  G+  A+AL++ G  V+  D  +    ++    + D AF  LHG 
Sbjct: 5   LLAGGWSPEREVSLKGGEQIAAALKERGHSVTLCDPAKDFERLMDMAREHDAAFINLHGA 64

Query: 62  FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT-MDS 120
            GEDGLVQAIL+ +  PY  +G   S L++ K  ++Q+    G+ +   + + R    + 
Sbjct: 65  PGEDGLVQAILDRVNCPYQGAGPAGSFLALHKAAARQIFRDAGLNIPDGVFLPRHPGPNW 124

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  +  P  +K   GGSSL +  +  ++ +   L  +S ++ G++ ++E  V G E+TCG
Sbjct: 125 KPDLQYPMFVKSNTGGSSLHLSRVTNEEELYTAL--NSLFSMGEEAIVETAVVGREVTCG 182

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V+G+ +L    + V K +++ Y  KY+   +  + PA I  +   +VQ  A  AH A+G 
Sbjct: 183 VLGEEALAPI-LVVSKGNYFDYHNKYAPDGAQEICPAPIAPEETAKVQDAALRAHHALGL 241

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +G SR+DF+       ++ LE+N  PGMT  S+ P  AA  G SF +L+  ++E A
Sbjct: 242 KGYSRADFIL-QDDGTLYILEVNTTPGMTSTSLVPREAAVKGMSFADLVERLLELA 296


>gi|254392473|ref|ZP_05007653.1| D-alanine-D-alanine ligase [Streptomyces clavuligerus ATCC 27064]
 gi|294815338|ref|ZP_06773981.1| D-alanine-D-alanine ligase [Streptomyces clavuligerus ATCC 27064]
 gi|326443692|ref|ZP_08218426.1| D-alanyl-alanine synthetase A [Streptomyces clavuligerus ATCC
           27064]
 gi|197706140|gb|EDY51952.1| D-alanine-D-alanine ligase [Streptomyces clavuligerus ATCC 27064]
 gi|294327937|gb|EFG09580.1| D-alanine-D-alanine ligase [Streptomyces clavuligerus ATCC 27064]
          Length = 390

 Score =  307 bits (787), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 100/363 (27%), Positives = 158/363 (43%), Gaps = 71/363 (19%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD-------- 52
           +AV+ GG SSE E+S+ +  A   A++ + + V  I +       L   +PD        
Sbjct: 24  VAVVFGGRSSEHEISVVTAGAVLRAIDRSVYDVLPIGITVDGRWALTADEPDRMAITDRR 83

Query: 53  ------------------------------------------LAFNVLHGNFGEDGLVQA 70
                                                     + F VLHG +GEDG +Q 
Sbjct: 84  LPSVDQLAESTEGDVVLSVHPGSREVVYTEPGSVPKALGEVDVVFPVLHGPYGEDGTLQG 143

Query: 71  ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI------ 124
           +LEL  +PY  +G+L+SA+  DK   K+V +S G+PV P  ++     +           
Sbjct: 144 LLELAGVPYVGAGVLSSAVGQDKEYMKRVFTSFGLPVGPYTVIRPREWEQDASAARKKIV 203

Query: 125 ------SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                   P  +KP + GSS+GI  +  D    LD     +  H  ++L+E  + G E+ 
Sbjct: 204 DFTGDHGWPVFVKPARAGSSIGITKV--DDLSGLDEAIEEARRHDPKILVEALLRGREIE 261

Query: 179 CGVMG-----DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           CGV+       AS+      V   DFY +E KY   +++ ++PA +  +   EV+RLA  
Sbjct: 262 CGVLEFEDGPRASVPAEIPPVQSHDFYDFEAKY-IDSASGIVPAPLTEEQTAEVRRLAVA 320

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           A  A  C G+ R+DF       +    EIN  PG TP+S++P M    G  + EL+  ++
Sbjct: 321 AFDAASCEGLVRADFFLTE-DGEFVINEINTMPGFTPISMYPRMWQETGVGYAELVDRLI 379

Query: 294 EDA 296
           + A
Sbjct: 380 QAA 382


>gi|298241042|ref|ZP_06964849.1| D-alanine/D-alanine ligase [Ktedonobacter racemifer DSM 44963]
 gi|297554096|gb|EFH87960.1| D-alanine/D-alanine ligase [Ktedonobacter racemifer DSM 44963]
          Length = 382

 Score =  307 bits (787), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 85/356 (23%), Positives = 157/356 (44%), Gaps = 62/356 (17%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           + ++ GG S E EVSL+S  +  + L+   ++V  I + ++   +L              
Sbjct: 15  IGLIFGGRSGEHEVSLASANSVMANLDKDKYEVILIGITKTGAWLLGTDPTRLLASPDAQ 74

Query: 47  -----------------------------------AHLKPDLAFNVLHGNFGEDGLVQAI 71
                                               +   D+ F V+HG +GEDG +Q +
Sbjct: 75  PNSAQSDQQATTAVTLTGDPNVRRLIPLQNGTQLHDNGALDVIFPVMHGTYGEDGALQGL 134

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QH 122
           LE+  +PY   G+L SAL MDK + K +  +  +PV P +  +R              + 
Sbjct: 135 LEMANVPYVGCGVLGSALGMDKEKMKMLFQAIHLPVLPFLAYHRKQWKQAPETILLAVEQ 194

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            +  P ++KP   GSS+G+      Q++   + Q+    +  +++IE+++D  EL+C V+
Sbjct: 195 ELGYPCIVKPANMGSSIGVSKAADRQTLEQAIAQAG--EYDTKIIIERWLDVRELSCAVL 252

Query: 183 GDASLDVTEIA--VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           G+     + I   V +     Y+ KY        +PA IP  + KEV  ++  A   +  
Sbjct: 253 GNEEPKTSLIGELVTEMTLLDYDAKYLHPGFHFDVPATIPGPLAKEVFHMSTQAFLVLDL 312

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            G++R DF  D    +++  E+N  P  T  S++P++ + +   + +LL  ++E A
Sbjct: 313 SGLARVDFFLDRNDGRIYINEVNTMPDFTQDSVYPKLWSASNLPYPKLLDRLIELA 368


>gi|294617801|ref|ZP_06697414.1| D-alanine--D-alanine ligase [Enterococcus faecium E1679]
 gi|291595941|gb|EFF27221.1| D-alanine--D-alanine ligase [Enterococcus faecium E1679]
          Length = 358

 Score =  307 bits (787), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 89/342 (26%), Positives = 158/342 (46%), Gaps = 51/342 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV-------------LA 47
           + +L GG S+E EVS+ S  +  +A+    ++V  + + +    V             + 
Sbjct: 3   ITLLYGGRSAEHEVSILSAFSVLNAIYYNYYQVQLVFITKEGQWVKGPLLTEKPASKDVL 62

Query: 48  HLKPD------------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
           HL  D                        + F VLHG  GEDG +Q  LE L +PY  +G
Sbjct: 63  HLSWDPSGQTEEGFTGKVINPGEIKEEGAIVFPVLHGPNGEDGTIQGFLETLNMPYVGAG 122

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLK 134
           +L SA +MDK+ +K ++ + GVP  P + V +              +  +  P  +KP  
Sbjct: 123 VLTSACAMDKIMTKYILQAAGVPQVPYVPVLKNQWKENPKKVFDQCEGSLLYPMFVKPAN 182

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI-- 192
            GSS+GI   +  + +   L  ++++ +  + ++EQ ++  E+   V+G+  +  T    
Sbjct: 183 MGSSVGITKAENREELQNAL--ATAYQYDSRAIVEQGIEAREIEVAVLGNEDVRTTLPGE 240

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            V    FY YE KY +      +PA++P ++Y++ Q  A LA+  +G  G+SR DF    
Sbjct: 241 VVKDVAFYDYEAKYINNKIEMQIPAEVPEEVYQKAQEYAKLAYTMLGGSGLSRCDFFLTN 300

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
              ++F  E+N  PG T  S +P +    G  + +L+  +++
Sbjct: 301 K-NELFLNELNSMPGFTEFSTYPLLWENMGLKYGDLIEELIQ 341


>gi|42527886|ref|NP_972984.1| D-alanyl-alanine synthetase A [Treponema denticola ATCC 35405]
 gi|81411504|sp|Q73JN2|DDL_TREDE RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|41818931|gb|AAS12903.1| D-alanine--D-alanine ligase [Treponema denticola ATCC 35405]
          Length = 368

 Score =  307 bits (787), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 93/353 (26%), Positives = 162/353 (45%), Gaps = 60/353 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           +A++ GG SSE EVSL S  +    ++    K+  I + ++    L              
Sbjct: 3   IAIIYGGKSSEHEVSLQSASSIIRTIDK-KHKLHLIGISKNGAWYLHGDEERERIIKNEK 61

Query: 47  -----------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEI 77
                                          L  D  F VLHG FGEDG +Q + E+ ++
Sbjct: 62  AVLKIKKDEAKRVTVIPGGGAKKGLKAGDEFLPTDAVFAVLHGRFGEDGTIQGLFEMADL 121

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD-----------SQHLISP 126
           PY    ++++++SMDK ++K +    G+P+ P I + R   D           ++  +  
Sbjct: 122 PYVGGDVMSTSISMDKEKTKMIWDYSGLPIVPYIAIKRQDWDDPEKKKAILARAEKDLEY 181

Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA- 185
           P  IKP + GSS+G  ++K    +     +S  W   +++L+E  ++  E+ C V G+  
Sbjct: 182 PLFIKPCRAGSSVGAGMVKNRNELLEQAEESFLW--DNKILVEACIEAREVECSVTGNTK 239

Query: 186 -SLDVTEIAVPKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
               +    +P   FY YE KY+  N   + +PA +     K ++  A  A++A+   G+
Sbjct: 240 TVAYIPGEIIPTHKFYDYEAKYTDPNGAELKIPADLNETQRKTIRETAIKAYEALDLSGL 299

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           SR DF  D  + K++  E+N  PG T +S+FP+M   +G  + EL++ ++E A
Sbjct: 300 SRVDFFIDKRTGKIYLNEVNTIPGFTAISMFPKMCGASGLPYNELIMHLIELA 352


>gi|228952937|ref|ZP_04115001.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228806742|gb|EEM53297.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
          Length = 304

 Score =  307 bits (787), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 90/303 (29%), Positives = 163/303 (53%), Gaps = 9/303 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGG+SSE++VS+ +G    + L+   +++  I ++  V L+      D A   LHG
Sbjct: 3   IGVIMGGVSSEKQVSIMTGNEMIAHLDKNKYEIVPITLNEKVDLIEKAKDIDFALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117
            +GEDG VQ  LE L IPY+ S +L+S++ MDK  SK+++   GV     I + +     
Sbjct: 63  KYGEDGTVQGTLESLGIPYSGSNMLSSSICMDKNISKKILRYEGVETPDWIELTKMEDLN 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
           +D    +  P V+KP  GGSS+G+ ++     +    +  + +    +++IE+Y+ G E+
Sbjct: 123 LDELDKLGFPLVVKPNSGGSSVGVKIVYNKNELIS--MLETVFEWDSEVVIEKYIKGDEI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC ++    L +  I    ++F+ Y  KY   ++   +  ++P++I + V + +   ++A
Sbjct: 181 TCSILDGKQLPIVSIR-HAAEFFDYNAKYDDTSTVEEV-IELPVEINERVNKASLACYKA 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           + C   +R D +        + +EIN  PGMT  S+ P+ A  AG S+ ELL  ++E + 
Sbjct: 239 LKCSVYARVDMMV--KDGIPYVMEINTLPGMTQSSLLPKSAEAAGISYSELLDMIIETSL 296

Query: 298 CLR 300
            +R
Sbjct: 297 KVR 299


>gi|209527619|ref|ZP_03276119.1| D-alanine/D-alanine ligase [Arthrospira maxima CS-328]
 gi|209491968|gb|EDZ92323.1| D-alanine/D-alanine ligase [Arthrospira maxima CS-328]
          Length = 358

 Score =  307 bits (787), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 103/344 (29%), Positives = 166/344 (48%), Gaps = 50/344 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASAL----EDAGFKVSQIDVDRSVGL--------VLAH 48
           +A+L GG S E EVS++S KA A+AL      + ++V  I ++++           VL  
Sbjct: 6   VALLFGGCSGEHEVSITSAKAIANALSIDPNPSKYEVVPIYIEKNGVWHRGTEAEAVLES 65

Query: 49  LKP----------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
            +P                      DL F +LHG  GEDG VQ +L L+++PY  SG+L 
Sbjct: 66  GQPLTVTGEVIPSDRIPDPATVKDIDLWFPILHGPNGEDGTVQGMLTLMQVPYVGSGVLG 125

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTM------------DSQHLISPPYVIKPLK 134
           SA+ MDK+  K   S  G+P      V R  +            D    +  P  +KP  
Sbjct: 126 SAVGMDKIAMKMAFSQAGIPQVRYQAVRRSQVWSNPCIFPKLCDDLDAALGYPCFVKPAN 185

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194
            GSS+GI  ++  Q +       ++  +  ++++E  V+  EL C V+G+     + +  
Sbjct: 186 LGSSVGISKVRSRQELEA--ALDAAATYDRRIIVEAGVEARELECAVLGNDYPKASVVGE 243

Query: 195 P--KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
               SDFY YE KY+   +  ++PA I   I  +V+ +A  A  A+   G++R DF +  
Sbjct: 244 ISYNSDFYDYETKYTDGKANLMIPAPIDTAIASKVRDMAIEAFLAVDAAGLARVDFFYIE 303

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            + +V   EIN  PG T +S++P++ +  G SF EL+  ++E A
Sbjct: 304 KTGEVLLNEINTLPGFTALSMYPQLWSATGISFPELVNQLIELA 347


>gi|15903558|ref|NP_359108.1| D-alanyl-alanine synthetase A [Streptococcus pneumoniae R6]
 gi|116516832|ref|YP_816940.1| D-alanyl-alanine synthetase A [Streptococcus pneumoniae D39]
 gi|32171386|sp|Q8DNV5|DDL_STRR6 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|122278214|sp|Q04J98|DDL_STRP2 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|15459177|gb|AAL00319.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae R6]
 gi|116077408|gb|ABJ55128.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae D39]
          Length = 347

 Score =  307 bits (787), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 99/334 (29%), Positives = 162/334 (48%), Gaps = 41/334 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKV--------------------------- 33
           + +L GG S+EREVS+ S ++   A++   F V                           
Sbjct: 5   IILLYGGRSAEREVSVLSAESVMRAVDYDRFTVKTFFISQSGDFIKTQEFSHAPGQEDRL 64

Query: 34  ---SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
                ID D+ V     + +  + F VLHG  GEDG VQ  LE+L++PY    IL+S+L+
Sbjct: 65  MTNETIDWDKKVAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLA 124

Query: 91  MDKMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
           MDK+ +K+V+ S G+   P +       V     + +  ++ P   KP   GSS+GI   
Sbjct: 125 MDKITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLAYPVFTKPSNMGSSVGISKS 184

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202
           +  + +   L    ++ +  ++L+EQ V+  E+  G++G+  +  T     V    FY Y
Sbjct: 185 ENQEELRQALKL--AFRYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDY 242

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
           + KY     T  +PAKI  D+   +++ A  A +AIG  G+SR DF +     ++F  E+
Sbjct: 243 DAKYIDNKVTMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDFFYTDK-GEIFLNEL 301

Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           N  PG T  S++P +    G S+ EL+  +V+ A
Sbjct: 302 NTMPGFTQWSMYPLLWENMGISYPELIERLVDLA 335


>gi|296393410|ref|YP_003658294.1| D-alanine/D-alanine ligase [Segniliparus rotundus DSM 44985]
 gi|296180557|gb|ADG97463.1| D-alanine/D-alanine ligase [Segniliparus rotundus DSM 44985]
          Length = 357

 Score =  307 bits (787), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 93/346 (26%), Positives = 156/346 (45%), Gaps = 57/346 (16%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP----------- 51
           VL GG+S E E+S  S  +  + L+ + +    + + +    VL    P           
Sbjct: 9   VLFGGVSGEHEISCLSAASVLAQLDPSRYTAVPVGITKEGDWVLDRRSPEELGDKAGGLP 68

Query: 52  --------------------------------DLAFNVLHGNFGEDGLVQAILELLEIPY 79
                                           D+ F VLHG +GEDG VQ + EL  +PY
Sbjct: 69  QVDRTAPRVALAVGRAGAGELRFVGGELAAQVDVVFPVLHGPYGEDGTVQGLFELANLPY 128

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKG 135
              G+ ASA  MDK   K ++   G+PV P  ++          +      P  +KP +G
Sbjct: 129 AGCGVFASAACMDKAHMKALLREGGLPVGPYAVLRPGDDADAAALGERLSLPVFVKPARG 188

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG-----DASLDVT 190
           GSSLG++ + + + +P  L  +++  +  ++L+E  + G E+ C V+       A+  + 
Sbjct: 189 GSSLGVVKVDRWEDLPHAL--ATARKYDPKVLVEAGIAGREIECAVLEFPDGRVAAGALG 246

Query: 191 EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
           EI VP++  Y +E KY +  +   +PAK+   +  E++ LA  A + + C G+SR DF  
Sbjct: 247 EIVVPET--YDFETKYLNNTAQLQVPAKLDESVASEIRALAVRAFRVMDCSGLSRVDFFL 304

Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                +    E+N  PG T  S++P+M   AG  +  LL  +++ A
Sbjct: 305 T-QDGRPVVNELNTLPGFTTSSLYPKMWERAGLDYPTLLSTLIDTA 349


>gi|292669643|ref|ZP_06603069.1| UDP-N-acetylmuramate--L-alanine ligase [Selenomonas noxia ATCC
           43541]
 gi|292648440|gb|EFF66412.1| UDP-N-acetylmuramate--L-alanine ligase [Selenomonas noxia ATCC
           43541]
          Length = 779

 Score =  307 bits (786), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 102/311 (32%), Positives = 166/311 (53%), Gaps = 15/311 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-VDRSVGLVLAHLKPDLAFNVLH 59
           + V+MGG S+E EVS  SGKA   AL   G+  + ++ + ++    +  L+P + FN LH
Sbjct: 473 IVVVMGGPSTEAEVSRRSGKAILQALLSKGYPAAGLELMPKTFAEEIQKLRPAIVFNALH 532

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF--- 116
           G +GEDG++Q  L++L +PYT SG+ A+AL+MDK  +K++  + G+      L++     
Sbjct: 533 GKYGEDGVLQGTLDMLGVPYTGSGVRAAALTMDKGTAKRIFRAEGIATPRFRLIDAGKCG 592

Query: 117 ---TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
                D +     P V+K  + GSS+G+ ++ + + +   L     + +G + L+E+++ 
Sbjct: 593 EHTAEDIRREFGLPVVVKAPEQGSSIGVHIVTRAEELNAALDDV--FTYGREALVEEFIR 650

Query: 174 GIELTCGVMG----DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           G ELT  V G      +L V EI    S  Y YE KY+   STH++PA +  +  + VQ 
Sbjct: 651 GRELTVVVWGMPAAAEALPVIEITTA-SGRYDYESKYTPGASTHIVPAALSKECTEAVQA 709

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           +A  A  A GC G +R D +      + + +E+N  PGMT  S+ P+ A   G  F EL 
Sbjct: 710 IAVRAFTACGCSGAARVDIMLSEEE-QPYVIEVNAVPGMTETSLVPDAARAVGMEFPELC 768

Query: 290 LWMVEDASCLR 300
             ++  A   R
Sbjct: 769 EKILTMAGYYR 779


>gi|303233440|ref|ZP_07320108.1| D-ala D-ala ligase N-terminal domain protein [Atopobium vaginae
           PB189-T1-4]
 gi|302480448|gb|EFL43540.1| D-ala D-ala ligase N-terminal domain protein [Atopobium vaginae
           PB189-T1-4]
          Length = 326

 Score =  307 bits (786), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 118/308 (38%), Positives = 170/308 (55%), Gaps = 16/308 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFK-VSQIDV-DRSVGLVLAHLKPDLAFNVL 58
           +AVL GG S ER++S+ SG  C  AL++AGF+ V   DV D S    LA  + D+ F  +
Sbjct: 11  VAVLAGGWSDERDISMQSGTECTKALQEAGFRHVELFDVKDLSFVSRLAAREFDVVFVAM 70

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
           HG FGEDG +Q +LE L IPYT SG+LASALSM K  +K V  S  +P    I V    +
Sbjct: 71  HGKFGEDGCIQGLLETLHIPYTGSGVLASALSMHKNMAKFVYRSANIPAPRDIYVPSHQV 130

Query: 119 DSQHL-------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
               L       ++ PYV+KP   GSS G+ ++    ++   +  +S+      +L+E+ 
Sbjct: 131 IDDELVQHITHDLTLPYVVKPTDNGSSFGVHLVSDAATLASAI--ASARGKNSGVLVEER 188

Query: 172 VDGIELTCGVMGDA---SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           + G E+T  V+G     +L V EI   ++  Y  + K       HV+PA +    Y   Q
Sbjct: 189 IVGTEITVPVIGTKNPHALPVVEIKY-EAPIYDLDAKNEPAALHHVIPANLSPAAYSRAQ 247

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
            LA  AH+A+GC G+SRSDF+ D  + + + LE N  PGMT  S+ P+ A + G SF EL
Sbjct: 248 ELAVRAHRALGCTGVSRSDFIVDA-TGEPYILETNNIPGMTEHSLIPDAARHDGMSFSEL 306

Query: 289 LLWMVEDA 296
             +++E A
Sbjct: 307 CTYLIECA 314


>gi|289167463|ref|YP_003445732.1| D-ala,D-ala ligase [Streptococcus mitis B6]
 gi|288907030|emb|CBJ21864.1| D-ala,D-ala ligase [Streptococcus mitis B6]
          Length = 347

 Score =  307 bits (786), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 99/334 (29%), Positives = 161/334 (48%), Gaps = 41/334 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKV--------------------------- 33
           + +L GG S+EREVS+ S ++   A+    F V                           
Sbjct: 5   IILLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDFIKTQEFSQTPGQEDRL 64

Query: 34  ---SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
                ID D+ V     + +  + F VLHG  GEDG VQ  LE+L++PY    IL+S+L+
Sbjct: 65  MTNETIDWDKQVAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLA 124

Query: 91  MDKMRSKQVVSSCGVPVCPSILVNRFTM------DSQHLISPPYVIKPLKGGSSLGIIVI 144
           MDK+ +K+V+ S G+   P + +           + +  ++ P   KP   GSS+GI   
Sbjct: 125 MDKITTKRVLESVGIAQVPYVAIVEGDDVTSKITEVEEKLNYPVFTKPSNMGSSVGISKS 184

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202
           +  + +   L    ++ +  ++L+EQ V+  E+  G++G+  +  T     V    FY Y
Sbjct: 185 ENQEELRQALKL--AFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDY 242

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
           + KY     T  +PAKI  D+   +++ A  A +AIG  G+SR DF +     ++F  E+
Sbjct: 243 DAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDFFYTDK-GEIFLNEL 301

Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           N  PG T  S++P +    G S+ EL+  +VE A
Sbjct: 302 NTMPGFTQWSMYPLLWDNMGISYPELIERLVELA 335


>gi|260886504|ref|ZP_05897767.1| D-alanine--D-alanine ligase [Selenomonas sputigena ATCC 35185]
 gi|330839652|ref|YP_004414232.1| D-alanine/D-alanine ligase [Selenomonas sputigena ATCC 35185]
 gi|260863647|gb|EEX78147.1| D-alanine--D-alanine ligase [Selenomonas sputigena ATCC 35185]
 gi|329747416|gb|AEC00773.1| D-alanine/D-alanine ligase [Selenomonas sputigena ATCC 35185]
          Length = 312

 Score =  307 bits (786), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 115/307 (37%), Positives = 175/307 (57%), Gaps = 15/307 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS-VGLVLAHLKPDLAFNVLH 59
           + V+MGG SSE EVS  +G A  SALE  G+ V  +++D       +      + FN LH
Sbjct: 6   IVVVMGGPSSEAEVSRRTGAAIVSALESKGYAVEGMELDPPHFAEAIRKSDCAIVFNALH 65

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G +GEDG++Q  L++L IPYT SG+LA+A++MDK+ SK+V    G+    S   +RF  D
Sbjct: 66  GRYGEDGVLQGTLDMLGIPYTGSGVLAAAVTMDKVMSKRVFLGAGISTPRSETFHRFEFD 125

Query: 120 SQ------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
           ++         S P VIK    GSS+G+ +++K+    L+     ++ + +++L+E+++ 
Sbjct: 126 AELPSRIRKAFSLPVVIKASSQGSSIGVAIVEKE--EELEAALKDAFRYDEEVLVEEFIR 183

Query: 174 GIELTCGVMGD----ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           G ELT  V GD     +  V EI    S  Y Y  KY+   STH++PA+IPLD+ + VQ+
Sbjct: 184 GKELTVAVWGDAREAQAFPVIEITTV-SGRYDYASKYTKGASTHIIPARIPLDVTERVQQ 242

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           LA  A +A GCRG++R+D +        + +EIN  PGMT  S+ P+     G  F EL 
Sbjct: 243 LAVDAFRACGCRGVARADMML-GEDMTPYVIEINSMPGMTETSLVPDAGRAMGVEFPELC 301

Query: 290 LWMVEDA 296
             ++E A
Sbjct: 302 ERILEMA 308


>gi|18309801|ref|NP_561735.1| D-alanine--D-alanine ligase [Clostridium perfringens str. 13]
 gi|39931177|sp|Q8XM71|DDLB_CLOPE RecName: Full=D-alanine--D-alanine ligase B; AltName:
           Full=D-Ala-D-Ala ligase B; AltName: Full=D-alanylalanine
           synthetaseB
 gi|18144479|dbj|BAB80525.1| D-alanine-D-alanine ligase [Clostridium perfringens str. 13]
          Length = 302

 Score =  307 bits (786), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 94/299 (31%), Positives = 165/299 (55%), Gaps = 8/299 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + ++MGGISSEREVSL+SG++  + ++   ++VS+I ++  + ++      D A   LHG
Sbjct: 3   VGIIMGGISSEREVSLASGESIFNHIDKEKYEVSKIIINNKIDILEKVKGLDFALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFT 117
            FGEDG VQA L++++IPY+  G L+S+L MDK  SK+V+ +  +     I V       
Sbjct: 63  KFGEDGTVQAFLDIMDIPYSGCGALSSSLCMDKNLSKKVLKAENIRTAKWITVKSIEEID 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            +    I  P  +KP  GGSS+    + K + I   +++     + ++++IE ++ G E+
Sbjct: 123 YEKIEEIGYPVFVKPNNGGSSVATFKVYKKEDIKNSVMEGL--KYDEEVIIESFIKGREI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC +       + EI   K+DFY Y+ KY++  + H+ P ++   +Y EV+ +A    + 
Sbjct: 181 TCPIFNGELFPILEIK-SKADFYDYKQKYAANGAEHL-PVQLEKSLYDEVKEMALKTFEV 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           + C   +R D +        + LE+N  PGMT  S+FP+ A   G S+ + +  ++E +
Sbjct: 239 LKCEVYARVDMIISE-EGVPYILEVNTLPGMTATSLFPQSAESRGISYSKFIDLIIETS 296


>gi|238793959|ref|ZP_04637578.1| D-alanine--D-alanine ligase [Yersinia intermedia ATCC 29909]
 gi|238726726|gb|EEQ18261.1| D-alanine--D-alanine ligase [Yersinia intermedia ATCC 29909]
          Length = 368

 Score =  307 bits (786), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 90/348 (25%), Positives = 158/348 (45%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP- 51
           + V+ GG S+E EVSL S K    A++   F V+ + +D+            +L    P 
Sbjct: 6   VGVIFGGKSAEHEVSLQSAKNIVEAIDKEKFDVTLLGIDKQGEWHVNDASSYLLNAENPA 65

Query: 52  ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
                                             D+ F ++HG  GEDG +Q +L +  I
Sbjct: 66  LISLNHSNKNVALIPGQEQQQLIAADNATALAQLDVIFPIVHGTLGEDGSLQGLLRMANI 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVIK 131
           P+  SG++ SA+SMDK  +K+++   G+ + P I + R   D+         +  P  IK
Sbjct: 126 PFVGSGVVGSAVSMDKDIAKRLLRDAGLNIAPFITLTRANKDNYSFEQMTAKLGLPLFIK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  ++        +  + +++   ++L+E  + G E+ C V+G+ +   + 
Sbjct: 186 PANQGSSVGVSKVRNAAEYQQAV--TLAFDFDHKVLVESAIVGREIECAVLGNDNPRASL 243

Query: 192 I--AVPKSDFYSYELKYSSL-NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               V   +FYSY+ KY +   +  V+PA I       ++ +A  A + + CRG++R D 
Sbjct: 244 CGEVVVSDEFYSYDTKYINETGAQVVIPAVIDSAASDHIRAVALAAFRTLECRGLARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              P    V   EIN  PG T ++++P++    G    EL+  ++E A
Sbjct: 304 FLTP-ENTVIINEINTLPGFTNINMYPKLWRATGVGSTELITTLIELA 350


>gi|323700785|ref|ZP_08112697.1| D-alanine/D-alanine ligase [Desulfovibrio sp. ND132]
 gi|323460717|gb|EGB16582.1| D-alanine/D-alanine ligase [Desulfovibrio desulfuricans ND132]
          Length = 303

 Score =  307 bits (786), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 106/296 (35%), Positives = 167/296 (56%), Gaps = 6/296 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK-PDLAFNVLH 59
           + ++ GG S ER+VSLS  +   SAL++ G  V+  D       +L+  K  D AF  LH
Sbjct: 3   VILIAGGWSDERDVSLSGARKIRSALDELGHDVTFFDPADDFRNLLSIAKGADFAFINLH 62

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT-M 118
           G  GEDGL+QA+L+    PY  +G  AS L+++K  SK+V  + G+      L+      
Sbjct: 63  GTPGEDGLIQAVLDKAGCPYQGAGPAASYLALNKAASKEVFEANGINTPEWQLITPTQGR 122

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           ++   +S P  +KP KGGSSLG+ ++K+ +  P  L +  +       L+E ++ G+ELT
Sbjct: 123 ETPLELSLPVFVKPDKGGSSLGMSLVKRAEDFPAALDKVFA--MCQSALVETFIPGVELT 180

Query: 179 CGVMGDASLDVTEIAV-PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           CG++G+ +L +  I     SDF+ YE KY++  +  + PA +   + + +Q    +AH A
Sbjct: 181 CGILGNEALPLIMITPRVGSDFFDYENKYAADGAEEICPAPVDEGLVRTIQEQMLVAHAA 240

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +G  G SR DF+  P   + + LE+N  PGMTP S+ P  AA+ GYSF EL+  ++
Sbjct: 241 LGLTGYSRGDFIATP-DGETYLLEVNTLPGMTPTSLLPRAAAHVGYSFTELIAELI 295


>gi|72382711|ref|YP_292066.1| D-alanyl-alanine synthetase A [Prochlorococcus marinus str. NATL2A]
 gi|123620894|sp|Q46JG5|DDL_PROMT RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|72002561|gb|AAZ58363.1| D-alanine--D-alanine ligase [Prochlorococcus marinus str. NATL2A]
          Length = 348

 Score =  307 bits (786), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 93/341 (27%), Positives = 167/341 (48%), Gaps = 47/341 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALE----DAGFKVSQIDVDR---------------- 40
           + V+ GG SSE EVS+ S K   +AL        +    I +D+                
Sbjct: 8   IGVVFGGKSSEHEVSIKSAKTIYNALRYLSNKERYIARPIYIDKYGYWHDYIFSESILFD 67

Query: 41  -SVGLVLAHLKP-----------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
               L+    +            D+ F  LHG  GEDG++Q + +    P+  SG+L SA
Sbjct: 68  KKDHLIFEERRINLTNLSNMEDIDVWFPCLHGPNGEDGVIQGLFKSTGKPFVGSGVLGSA 127

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ-----------HLISPPYVIKPLKGGS 137
           L MDK+  K V  S  +P  P I +N+  + +             +IS P  IKP   GS
Sbjct: 128 LGMDKIAMKSVFKSYNLPQVPYISLNKPDIQNNLYMKSIYEQINKIISYPCFIKPANLGS 187

Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK- 196
           S+GI      +     +    +  + +++++E+ ++G EL CG++G + +  + +   K 
Sbjct: 188 SVGITKAYSKEEFIAGI--EFAAKYDERIIVEKSIEGRELECGILGKSIMKSSVVGEVKF 245

Query: 197 -SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255
            +D+Y+YE KY++  S+ ++PA + ++I  ++Q+LA  A +AI   G++R DF +   ++
Sbjct: 246 QTDWYTYESKYNANLSSTIIPADLNIEISNKIQKLAIEACKAINAYGLARVDFFYQESTQ 305

Query: 256 KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +++  E+N  PG T  S++P +   +G    +L+  ++E A
Sbjct: 306 QIYINEVNTLPGFTKTSMYPTLWEASGLKLEKLVANLIEIA 346


>gi|302558175|ref|ZP_07310517.1| D-alanine-D-alanine ligase [Streptomyces griseoflavus Tu4000]
 gi|302475793|gb|EFL38886.1| D-alanine-D-alanine ligase [Streptomyces griseoflavus Tu4000]
          Length = 385

 Score =  307 bits (786), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 101/363 (27%), Positives = 156/363 (42%), Gaps = 71/363 (19%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +AV+ GG SSE  +S+ +  A   A++   + V  I + +     L   +P         
Sbjct: 19  VAVVFGGRSSEHGISVVTAGAVLKAIDRTRYDVLPIGITQDGRWALTADEPERMAISDRR 78

Query: 52  -----------------------------------------DLAFNVLHGNFGEDGLVQA 70
                                                    D+ F VLHG +GEDG +Q 
Sbjct: 79  TPSVDQLAESTEGGVVLPVDPANREVVYSEPGSVPKALGEVDVVFPVLHGPYGEDGTLQG 138

Query: 71  ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM------------ 118
           +LEL  +PY  SG+LASA+  DK   K+V +S G+ V P +++                 
Sbjct: 139 LLELSGVPYVGSGVLASAVGQDKEYMKRVFTSFGLKVGPYLVIRPREWERDESAARRKIV 198

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           D       P  +KP + GSS+GI  +  D    LD   + +  H  + L+E  + G E+ 
Sbjct: 199 DFAGEHGWPLFVKPARAGSSIGITKV--DDLSALDEAIAEARRHDPKFLVEAALRGREIE 256

Query: 179 CGVMGDASLD----VTEIAVPKSD-FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           CGV+            EI  P +  +Y +E KY   ++  ++PA +  +   EV+RLA  
Sbjct: 257 CGVLEFEDGPRASLPAEIPPPDAHAYYDFEAKY-IDSTPGIVPAPLTDEETAEVRRLAVE 315

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           A  A  C G+ R+DF       +    EIN  PG TP+S++P+M    G S+ EL+  +V
Sbjct: 316 AFDAASCEGLVRADFFLTE-DGEFVINEINTMPGFTPISMYPQMWQATGVSYPELVDLLV 374

Query: 294 EDA 296
             A
Sbjct: 375 RAA 377


>gi|170761380|ref|YP_001785794.1| D-alanine--D-alanine ligase [Clostridium botulinum A3 str. Loch
           Maree]
 gi|229463745|sp|B1KV16|DDL_CLOBM RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|169408369|gb|ACA56780.1| D-alanine--D-alanine ligase [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 300

 Score =  307 bits (786), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 96/297 (32%), Positives = 157/297 (52%), Gaps = 9/297 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGGIS+EREVSL+SG+     LE    ++  I +D+   ++      D AF  LHG
Sbjct: 3   IGVIMGGISTEREVSLNSGREVIKYLELLEHEIIPIIIDKKEDVMEKAKGIDFAFLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF---T 117
            FGEDG VQ++L+ L+IPY+  G L SA+ MDK  +K+++    +     + V       
Sbjct: 63  KFGEDGTVQSVLQTLDIPYSGCGPLTSAICMDKDMTKKILKYANINTADWVNVTNAEDID 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            ++   I  P  +KP  GGSS+   ++K  + I   +  +    +  +++IE Y  G E+
Sbjct: 123 YEAIEKIGYPVFVKPNSGGSSVATNLVKNKEGIKEAVELAL--KYDKEVMIENYTKGEEI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC ++    L V  I  P ++F+ Y  KY+   S  V+  ++  +++K+V+ +A    + 
Sbjct: 181 TCCMLNGKMLPVLAIR-PHAEFFDYTAKYADGGSDEVV-IELEENLHKKVEEMALACWKE 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           + C    R D +        + LE+N  PGMT  S+FP+ A   G SF ELL  +V+
Sbjct: 239 LKCEVYVRVDMIVKE--GVPYVLELNTLPGMTKNSLFPKSANAVGISFAELLNSIVK 293


>gi|33355853|gb|AAQ16273.1| D-Ala:D-Ser ligase [Enterococcus faecalis]
 gi|77380199|gb|ABA71731.1| VanG [Enterococcus faecalis]
          Length = 349

 Score =  307 bits (786), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 101/342 (29%), Positives = 158/342 (46%), Gaps = 52/342 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44
           +AV+ GG S+E EVSL S  A    +    F +  I + RS                   
Sbjct: 6   IAVIFGGNSTEYEVSLQSASAVFENINTNKFDIIPIGITRSGEWYHYTGEKEKILNNTWF 65

Query: 45  --------------------------VLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIP 78
                                         +K DL F VLHG  GEDG +Q I EL  IP
Sbjct: 66  EDSKNLCPVVVSQNRSVKGFLEIASDKYRIIKVDLVFPVLHGKNGEDGTLQGIFELAGIP 125

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-----QHLISPPYVIKPL 133
                 L+SAL MDK R+ ++VS  G+ V  S+   RF  ++     +  ++ P  IKP+
Sbjct: 126 VVGCDTLSSALCMDKDRAHKLVSLAGISVPKSVTFKRFNEEAAMKEIEANLTYPLFIKPV 185

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
           + GSS GI  + + Q +  D     ++ H  ++++E+ ++G E+ C V+G   L V  + 
Sbjct: 186 RAGSSFGITKVIEKQEL--DAAIELAFEHDTEVIVEETINGFEVGCAVLGIDELIVGRVD 243

Query: 194 VPK--SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
             +  S F+ Y  KY+  +S   +PA+I  +  K +Q  A   ++A+GC G SR D  + 
Sbjct: 244 EIELSSGFFDYTEKYTLKSSKIYMPARIDAEAEKRIQEAAVTIYKALGCSGFSRVDMFYT 303

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           P   ++ + E+N  PG T  S +P M    G SF ++L  ++
Sbjct: 304 PS-GEIVFNEVNTIPGFTSHSRYPNMMKGIGLSFSQMLDKLI 344


>gi|332701304|ref|ZP_08421392.1| D-alanine--D-alanine ligase [Desulfovibrio africanus str. Walvis
           Bay]
 gi|332551453|gb|EGJ48497.1| D-alanine--D-alanine ligase [Desulfovibrio africanus str. Walvis
           Bay]
          Length = 306

 Score =  307 bits (786), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 101/294 (34%), Positives = 155/294 (52%), Gaps = 6/294 (2%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLA-HLKPDLAFNVLHGN 61
           ++ GG S+EREVSLS       AL   G KV+++D       +L      D AF  +HG 
Sbjct: 5   LIAGGWSNEREVSLSGAAKIHEALLRLGCKVTRLDPAERFDDILELASGSDFAFINMHGT 64

Query: 62  FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF-TMDS 120
            GEDGLVQA+LE ++ PY  SG  AS L+++K  +KQV +  G+P      + R      
Sbjct: 65  PGEDGLVQAMLEQVDCPYQGSGPKASFLALNKACAKQVFARAGIPTPRWEYLPRRPQAGW 124

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P  +KP  GGSSL +      + +   +     +  G+ +L+E+ V+G E+T  
Sbjct: 125 STKLRFPLFVKPNMGGSSLDLCRADNAEELTPAI--ERIFCRGETVLLEEGVNGQEVTSA 182

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           ++G+ +L +  I      F+ Y  KY+   +  + PA IP  I + VQ L+  AH+A+  
Sbjct: 183 ILGEKALPLILIQPAGCAFFDYRCKYTQGGAKEICPAPIPERIARRVQELSMRAHKAMKL 242

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           RG SRSDF+      + + LE+N  PGMTP S+ P+ A  AG  F  L+  +++
Sbjct: 243 RGYSRSDFML--EGDEPYILEVNTLPGMTPTSLVPQAAHEAGLDFDALIKRLMD 294


>gi|126434497|ref|YP_001070188.1| D-alanyl-alanine synthetase A [Mycobacterium sp. JLS]
 gi|167012328|sp|A3PXS0|DDL_MYCSJ RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|126234297|gb|ABN97697.1| D-alanine--D-alanine ligase [Mycobacterium sp. JLS]
          Length = 371

 Score =  307 bits (786), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 101/361 (27%), Positives = 163/361 (45%), Gaps = 66/361 (18%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +AV+ GG SSE  +S  S  +    L+   F V  + +      VL   +P         
Sbjct: 10  VAVVYGGRSSEHAISCVSAGSILRNLDPERFDVVAVGITPDGSWVLTDGRPETLAITDGR 69

Query: 52  ---------------------------------------DLAFNVLHGNFGEDGLVQAIL 72
                                                  D+ F VLHG +GEDG +Q +L
Sbjct: 70  LPEVSAESGTALALPADPGRRGELVSLSPAPAGEVLAAVDVVFPVLHGPYGEDGTIQGLL 129

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF----TMDSQHLISPPY 128
           EL  +PY  +G+LASA  MDK  +K+++ + G+PV   +++       T+D +  +  P 
Sbjct: 130 ELAGVPYVGAGVLASAAGMDKEFTKKLLVAEGLPVGDHVVLRPGRANVTLDERERLGLPV 189

Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD---- 184
            +KP +GGSS+G+  +     +P  +   ++  H  ++++E  + G EL CGV+      
Sbjct: 190 FVKPARGGSSIGVSRVSDWAELPAAI--EAARRHDPKVIVEAGIAGRELECGVLEYPDGR 247

Query: 185 -ASLDVTEIAVP-----KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             +  + EI V      +  FY +  KY    +   +PAK+  D+  E++RLA  A +AI
Sbjct: 248 VDASTIGEIRVAGVRGREDGFYDFATKYLDDGAELDVPAKVEDDVADEIRRLAIRAFRAI 307

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
            C+G++R DF            EIN  PG T +S++P M A +G  +  LL  MV+ A  
Sbjct: 308 DCQGLARVDFFLT--DDGPVVNEINTMPGFTTISMYPRMWAASGVDYPTLLAAMVDTAVA 365

Query: 299 L 299
            
Sbjct: 366 R 366


>gi|229044313|ref|ZP_04191982.1| D-alanine--D-alanine ligase [Bacillus cereus AH676]
 gi|229127959|ref|ZP_04256943.1| D-alanine--D-alanine ligase [Bacillus cereus BDRD-Cer4]
 gi|228655521|gb|EEL11375.1| D-alanine--D-alanine ligase [Bacillus cereus BDRD-Cer4]
 gi|228725027|gb|EEL76315.1| D-alanine--D-alanine ligase [Bacillus cereus AH676]
          Length = 304

 Score =  307 bits (786), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 88/303 (29%), Positives = 162/303 (53%), Gaps = 9/303 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGG+SSE++VS+ +G    + L+   +++  I ++  + L+      D A   LHG
Sbjct: 3   IGVIMGGVSSEKQVSIMTGNEMIAHLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117
            +GEDG VQ  LE L IPY+ S +L+S++ MDK  SK+++   GV     I + +     
Sbjct: 63  KYGEDGTVQGTLESLGIPYSGSNMLSSSICMDKNISKKILRYEGVETPDWIELTKMEDLN 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
           +D    +  P V+KP  GGSS+G+ ++     +    +  + +    +++IE+Y+ G E+
Sbjct: 123 LDELDKLGFPLVVKPNSGGSSVGVKIVYNKNELIS--MLETVFEWDSEVVIEKYIKGDEI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC ++    L +  I    ++F+ Y  KY   ++   +  ++P +I + V + +   ++A
Sbjct: 181 TCSILDGKQLPIVSIR-HAAEFFDYNAKYDDTSTVEEV-IELPAEIKERVNKASLTCYKA 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           + C   +R D +        + +EIN  PGMT  S+ P+ A  AG S+ +LL  ++E + 
Sbjct: 239 LKCSVYARVDMMV--KDGIPYVMEINTLPGMTQSSLLPKSAEAAGISYSKLLDMIIETSL 296

Query: 298 CLR 300
            +R
Sbjct: 297 KVR 299


>gi|218233071|ref|YP_002367292.1| D-alanine--D-alanine ligase [Bacillus cereus B4264]
 gi|229145195|ref|ZP_04273586.1| D-alanine--D-alanine ligase [Bacillus cereus BDRD-ST24]
 gi|296503144|ref|YP_003664844.1| D-alanine--D-alanine ligase [Bacillus thuringiensis BMB171]
 gi|218161028|gb|ACK61020.1| D-alanine--D-alanine ligase [Bacillus cereus B4264]
 gi|228638282|gb|EEK94721.1| D-alanine--D-alanine ligase [Bacillus cereus BDRD-ST24]
 gi|296324196|gb|ADH07124.1| D-alanine--D-alanine ligase [Bacillus thuringiensis BMB171]
          Length = 304

 Score =  307 bits (786), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 89/303 (29%), Positives = 162/303 (53%), Gaps = 9/303 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGG+SSE++VS+ +G    + L+   +++  I ++  + LV      D A   LHG
Sbjct: 3   IGVIMGGVSSEKQVSIMTGNEMIAHLDKNKYEIVPITLNEKIDLVEKAKDIDFALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117
            +GEDG VQ  LE L IPY+ S +L+S++ MDK  SK+++   GV     I + +     
Sbjct: 63  KYGEDGTVQGTLESLGIPYSGSNMLSSSICMDKNISKKILRYEGVETPDWIELTKMEDLN 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
           +D    +  P V+KP  GGSS+G+ ++     +    +  + +    +++IE+Y+ G E+
Sbjct: 123 LDELDKLGFPLVVKPNSGGSSVGVKIVYNKNELIS--MLETVFEWDSEVVIEKYIKGDEI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC ++    L +  I    ++F+ Y  KY   ++   +  ++P +I + V + +   ++A
Sbjct: 181 TCSILDGKQLPIVSIR-HAAEFFDYNAKYDDTSTVEEV-IELPAEIKERVNKASLACYKA 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           + C   +R D +        + +EIN  PGMT  S+ P+ A  AG S+ +LL  ++E + 
Sbjct: 239 LKCSVYARVDMMV--KDGIPYVMEINTLPGMTQSSLLPKSAEAAGISYSKLLDMIIETSL 296

Query: 298 CLR 300
            +R
Sbjct: 297 KVR 299


>gi|21223916|ref|NP_629695.1| D-alanyl-alanine synthetase A [Streptomyces coelicolor A3(2)]
 gi|289768877|ref|ZP_06528255.1| D-alanyl-alanine synthetase A [Streptomyces lividans TK24]
 gi|6919858|sp|Q9ZBR9|DDL_STRCO RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|4007719|emb|CAA22403.1| D-alanine-D-alanine ligase [Streptomyces coelicolor A3(2)]
 gi|289699076|gb|EFD66505.1| D-alanyl-alanine synthetase A [Streptomyces lividans TK24]
          Length = 389

 Score =  307 bits (786), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 103/363 (28%), Positives = 159/363 (43%), Gaps = 71/363 (19%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +AV+ GG SSE  +S+ +  A  +A++   + V  I + R     L   +P         
Sbjct: 23  VAVVFGGRSSEHGISVVTAGAVLAAIDRTRYDVLPIGITRDGRWALTADEPERMAITERR 82

Query: 52  -----------------------------------------DLAFNVLHGNFGEDGLVQA 70
                                                    D+ F VLHG +GEDG +Q 
Sbjct: 83  TPDVEELAESTEGGVLLPVDPANREVVYSEPGSVPKALGEVDVVFPVLHGPYGEDGTLQG 142

Query: 71  ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM------------ 118
           +LEL  +PY  +G+LASA+  DK   K V +S G+ V P  ++                 
Sbjct: 143 LLELSGVPYVGAGVLASAVGQDKEYMKAVFTSYGLKVGPYAVIRPREWEQDRSGARKKIV 202

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           D       P  +KP + GSS+GI  +  D    LD     +  H  ++L+E  + G E+ 
Sbjct: 203 DFAGEHGWPLFVKPARAGSSIGITKV--DDLAGLDEAIEEARRHDPKILVEAALRGREIE 260

Query: 179 CGVM----GDASLDVTEIAVP-KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           CGV+    G  +    EI  P +  +Y +E KY   ++  ++PA +  +   EVQRLA  
Sbjct: 261 CGVLEFEDGPRASVPAEIPPPSEHAYYDFEAKY-IDSTPGIVPAPLTAEETAEVQRLAVA 319

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           A  A  C G+ R+DF       +    EIN  PG TP+S++P+M   +G S+ EL+  +V
Sbjct: 320 AFDAASCEGLVRADFFLTE-DDEFVINEINTMPGFTPISMYPQMWQASGVSYPELVDRLV 378

Query: 294 EDA 296
           + A
Sbjct: 379 QAA 381


>gi|239928719|ref|ZP_04685672.1| D-alanyl-alanine synthetase A [Streptomyces ghanaensis ATCC 14672]
 gi|291437043|ref|ZP_06576433.1| D-alanyl-alanine synthetase A [Streptomyces ghanaensis ATCC 14672]
 gi|291339938|gb|EFE66894.1| D-alanyl-alanine synthetase A [Streptomyces ghanaensis ATCC 14672]
          Length = 385

 Score =  307 bits (786), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 101/363 (27%), Positives = 159/363 (43%), Gaps = 71/363 (19%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +AV+ GG SSE  +S+ +  A   A++ + + V  I +       L   +P         
Sbjct: 19  VAVVFGGRSSEHGISVVTAGAVLKAIDRSQYDVLPIGITADGRWALTADEPERMAITDRR 78

Query: 52  -----------------------------------------DLAFNVLHGNFGEDGLVQA 70
                                                    D+ F VLHG +GEDG +Q 
Sbjct: 79  TPSVDQLAESTEGGVVLPVDPASREVVYSEPGSVPKALGEVDVVFPVLHGPYGEDGTLQG 138

Query: 71  ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM------------ 118
           +LEL  +PY  SG+LASA+  DK   K+V +S G+ V P +++                 
Sbjct: 139 LLELSGVPYVGSGVLASAVGQDKEYMKRVFTSFGLKVGPYVVIRPREWQRDESAARKKIV 198

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           D       P  +KP + GSS+GI  +  D    LD   + +  H  ++L+E  + G E+ 
Sbjct: 199 DFAGEHGWPLFVKPARAGSSIGITKV--DDLSGLDGAIAEAQRHDPKILVEAALRGREIE 256

Query: 179 CGVM----GDASLDVTEIAVPKSD-FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           CGV+    G  +    EI  P +  +Y +E KY   ++  ++PA +  +   EV+RLA  
Sbjct: 257 CGVLEFEDGPRASVPAEIPPPDAHAYYDFEAKY-IDSTPGIVPAPLTEEETAEVRRLAVE 315

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           A +A  C G+ R+DF            EIN  PG TP+S++P+M    G  + EL+  +V
Sbjct: 316 AFEAASCEGLVRADFFLTE-DGDFVINEINTMPGFTPISMYPQMWQATGIGYPELVDRLV 374

Query: 294 EDA 296
           + A
Sbjct: 375 QAA 377


>gi|183981746|ref|YP_001850037.1| d-alanine--D-alanine ligase DdlA [Mycobacterium marinum M]
 gi|183175072|gb|ACC40182.1| d-alanine--D-alanine ligase DdlA [Mycobacterium marinum M]
          Length = 373

 Score =  307 bits (786), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 106/357 (29%), Positives = 169/357 (47%), Gaps = 65/357 (18%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD-------- 52
           +AV+ GG S+E  +S  S  +    L+   F+V  I +      VL    PD        
Sbjct: 13  VAVVFGGRSNEHAISCVSAGSILRNLDPRRFEVIAIGITPQGSWVLTDGNPDALAITDRR 72

Query: 53  ---------------------------------------LAFNVLHGNFGEDGLVQAILE 73
                                                  + F VLHG +GEDG +Q +LE
Sbjct: 73  LPEVSSQSGTELALPADPRWGGQLVSLPPGAGEVLASVDVVFPVLHGPYGEDGTIQGLLE 132

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHL--ISPPYV 129
           L  +PY  +G+LASA  MDK  +K++ S+ G+P+ P  ++   R ++D + L  +  P  
Sbjct: 133 LAGVPYVGAGVLASAAGMDKEFTKKLWSAAGLPIGPHAVLRPSRQSLDREELQRLGLPAY 192

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG--DASL 187
           +KP +GGSS+G+  +     +P  +  +++  H  ++++E  ++G EL CGV+   D  L
Sbjct: 193 VKPARGGSSIGVSRVSSFDELPAAI--AAARRHDPKVIVEAAINGRELECGVLEFPDGRL 250

Query: 188 DVT---EIAVP-----KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
           + +   EI V      +  FY +E KY    +   +PAK+  D+   V++LA  A +AI 
Sbjct: 251 EASTLGEIRVAGVRGREDGFYDFETKYLDDAAELDVPAKVEDDVADAVRQLAIRAFEAID 310

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           C+G++R DF            EIN  PG T +S++P M A +G  +  LL  MVE A
Sbjct: 311 CQGLARVDFFLT--DDGPVINEINTMPGFTTISMYPRMWAASGVDYPTLLATMVETA 365


>gi|84621981|ref|YP_449353.1| D-alanyl-alanine synthetase A [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|122879012|ref|YP_198991.6| D-alanyl-alanine synthetase A [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|84365921|dbj|BAE67079.1| D-alanine-D-alanine ligase A [Xanthomonas oryzae pv. oryzae MAFF
           311018]
          Length = 367

 Score =  307 bits (786), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 93/348 (26%), Positives = 163/348 (46%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44
           + ++ GG S+E EVSL S +    AL+   F+   I +D+                    
Sbjct: 6   VGLIFGGKSAEHEVSLQSARNILDALDPQRFEPVLIGIDKQGQWHVNDPDSFLLHADDPA 65

Query: 45  --------------------VLAHLKP-------DLAFNVLHGNFGEDGLVQAILELLEI 77
                                L  ++P       D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  RIALHRSGRGVALLPGAQQQQLRPIQPEQALAQIDVVFPIVHGTLGEDGSLQGLLRMANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIK 131
           P+  SG+L SA++MDK  +K+V+    + V P +  +R T     +      +  P  +K
Sbjct: 126 PFVGSGVLGSAVAMDKDMAKRVLRDARLAVAPFVCFDRHTAAHADVDTLIAQLGLPLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  ++   +    L  + +++H  ++L+E  V G E+ C V+G+A    + 
Sbjct: 186 PANQGSSVGVSQVRTADAFAAALALALAYDH--KVLVEAAVAGREIECAVLGNAVPHASV 243

Query: 192 I--AVPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               V    FYSY  KY S   +  V+PA I     + +Q++A  A+QA+GC G++R D 
Sbjct: 244 CGEVVVHDAFYSYATKYISEHGAEIVIPADIDAQTQQRIQQIAVQAYQALGCAGMARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                  ++   E+N  PG T +S++P++   +G  +R L+  ++E A
Sbjct: 304 FL-CADGRIVINEVNTLPGFTRISMYPKLWQASGLDYRGLITRLIELA 350


>gi|206972463|ref|ZP_03233408.1| D-alanine--D-alanine ligase [Bacillus cereus AH1134]
 gi|229181827|ref|ZP_04309135.1| D-alanine--D-alanine ligase [Bacillus cereus 172560W]
 gi|206732623|gb|EDZ49800.1| D-alanine--D-alanine ligase [Bacillus cereus AH1134]
 gi|228601625|gb|EEK59138.1| D-alanine--D-alanine ligase [Bacillus cereus 172560W]
          Length = 304

 Score =  307 bits (786), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 89/303 (29%), Positives = 162/303 (53%), Gaps = 9/303 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGG+SSE++VS+ +G    + L+   +++  I ++  V L+      D A   LHG
Sbjct: 3   IGVIMGGVSSEKQVSIMTGNEMIAHLDKNKYEIVPITLNEKVDLIEKAKDIDFALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117
            +GEDG VQ  LE L IPY+ S +L+S++ MDK  SK+++   GV     I + +     
Sbjct: 63  KYGEDGTVQGTLESLGIPYSGSNMLSSSICMDKNISKKILRYEGVETPDWIELTKMEDLN 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
           +D    +  P V+KP  GGSS+G+ ++     +    +  + +    +++IE+Y+ G E+
Sbjct: 123 LDELDKLGFPLVVKPNSGGSSVGVKIVYNKNELIS--MLETVFEWDSEVVIEKYIKGDEI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC ++    L +  I    ++F+ Y  KY   ++   +  ++P +I + V + +   ++A
Sbjct: 181 TCSILDGKQLPIVSIR-HAAEFFDYNAKYDDTSTVEEV-IELPAEINERVNKASLACYKA 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           + C   +R D +        + +EIN  PGMT  S+ P+ A  AG S+ +LL  ++E + 
Sbjct: 239 LKCSVYARVDMMV--KDGVPYVMEINTLPGMTQSSLLPKSAEAAGISYSKLLDMIIETSL 296

Query: 298 CLR 300
            +R
Sbjct: 297 KVR 299


>gi|319947394|ref|ZP_08021626.1| D-alanine-D-alanine ligase [Streptococcus australis ATCC 700641]
 gi|319746334|gb|EFV98595.1| D-alanine-D-alanine ligase [Streptococcus australis ATCC 700641]
          Length = 348

 Score =  306 bits (785), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 96/334 (28%), Positives = 158/334 (47%), Gaps = 41/334 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQ------------------------- 35
           + +L GG S+EREVS+ S ++   A+    + V                           
Sbjct: 6   IVLLYGGRSAEREVSVLSAESVMRAINYDKYSVETYFITQAGDFIKTQTFEEKPAETERL 65

Query: 36  -----IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
                ID D        + +  + F VLHG  GEDG VQ  LE+L++PY    IL+S+++
Sbjct: 66  MTNETIDWDAKATPSSIYQEGAVVFPVLHGPMGEDGSVQGFLEVLKLPYVGCDILSSSVA 125

Query: 91  MDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVIKPLKGGSSLGIIVI 144
           MDK+ +K+V+ S G+P  P + V             +  ++ P   KP   GSS+GI   
Sbjct: 126 MDKITTKRVLESAGIPQVPYVAVLEGDDLEAKITLIEKELTYPVFTKPSNMGSSVGISKA 185

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202
           +    +   L    ++ +  ++L+EQ V   E+  G++G+  +  T     V    FY Y
Sbjct: 186 ENQAELRKSL--ELAFKYDSRVLVEQGVVAREIEVGLLGNYDVKSTLPGEVVKDVAFYDY 243

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
           E KY     T  +PA+IP ++   ++  A LA +AIG +G+SR DF +      ++  E+
Sbjct: 244 EAKYIDNKITMAIPAEIPAEVAATMRHNAELAFRAIGGKGLSRCDFFYTE-DGGIYLNEL 302

Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           N  PG T  S++P +    G ++ +L+  +VE A
Sbjct: 303 NTMPGFTQWSMYPLLWDNMGLAYPDLIERLVELA 336


>gi|168488615|ref|ZP_02712814.1| D-alanine--D-alanine ligase (D-alanylalanine
           synthetase)(D-Ala-D-Ala ligase) [Streptococcus
           pneumoniae SP195]
 gi|221232408|ref|YP_002511561.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae ATCC 700669]
 gi|225855101|ref|YP_002736613.1| D-alanyl-alanine synthetase A [Streptococcus pneumoniae JJA]
 gi|298230136|ref|ZP_06963817.1| D-alanyl-alanine synthetase A [Streptococcus pneumoniae str. Canada
           MDR_19F]
 gi|298254425|ref|ZP_06978011.1| D-alanyl-alanine synthetase A [Streptococcus pneumoniae str. Canada
           MDR_19A]
 gi|298503415|ref|YP_003725355.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae TCH8431/19A]
 gi|254767740|sp|B8ZM66|DDL_STRPJ RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|254767742|sp|C1CFP2|DDL_STRZJ RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|6634564|emb|CAB64463.1| D-ala,D-ala ligase [Streptococcus pneumoniae]
 gi|6634569|emb|CAB64467.1| D-ala,D-ala ligase [Streptococcus pneumoniae]
 gi|183572621|gb|EDT93149.1| D-alanine--D-alanine ligase (D-alanylalanine
           synthetase)(D-Ala-D-Ala ligase) [Streptococcus
           pneumoniae SP195]
 gi|220674869|emb|CAR69444.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae ATCC 700669]
 gi|225724220|gb|ACO20073.1| D-alanine--D-alanine ligase (D-alanylalanine
           synthetase)(D-Ala-D-Ala ligase) [Streptococcus
           pneumoniae JJA]
 gi|298239010|gb|ADI70141.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae TCH8431/19A]
 gi|332072500|gb|EGI82983.1| D-alanine--D-alanine ligase family protein [Streptococcus
           pneumoniae GA17570]
          Length = 347

 Score =  306 bits (785), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 99/334 (29%), Positives = 161/334 (48%), Gaps = 41/334 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKV--------------------------- 33
           + +L GG S+EREVS+ S ++   A+    F V                           
Sbjct: 5   IILLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDSIKTQEFSHAPGQEDRL 64

Query: 34  ---SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
                ID D+ V     + +  + F VLHG  GEDG VQ  LE+L++PY    IL+S+L+
Sbjct: 65  MTNETIDWDKKVAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLA 124

Query: 91  MDKMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
           MDK+ +K+V+ S G+   P +       V     + +  ++ P   KP   GSS+GI   
Sbjct: 125 MDKITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLAYPVFTKPSNMGSSVGISKS 184

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202
           +  + +   L    ++ +  ++L+EQ V+  E+  G++G+  +  T     V    FY Y
Sbjct: 185 ENQEELRQALKL--AFRYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDY 242

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
           + KY     T  +PAKI  D+   +++ A  A +AIG  G+SR DF +     ++F  E+
Sbjct: 243 DAKYIDNKVTMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDFFYTDK-GEIFLNEL 301

Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           N  PG T  S++P +    G S+ EL+  +V+ A
Sbjct: 302 NTMPGFTQWSMYPLLWENMGISYPELIERLVDLA 335


>gi|325474895|gb|EGC78081.1| D-alanine-D-alanine ligase [Treponema denticola F0402]
          Length = 368

 Score =  306 bits (785), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 92/353 (26%), Positives = 162/353 (45%), Gaps = 60/353 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           +A++ GG SSE EVSL S  +    ++    K+  I + ++    L              
Sbjct: 3   IAIIYGGKSSEHEVSLQSASSIIRTIDK-KHKLHLIGISKNGAWYLHGDEERERIIKNEK 61

Query: 47  -----------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEI 77
                                          L  D  F VLHG FGEDG +Q + E+ ++
Sbjct: 62  AVLKIKKDEAKRVTVIPGGGTKKGLKAGDDFLPTDAVFAVLHGRFGEDGTIQGLFEMADL 121

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD-----------SQHLISP 126
           PY    ++++++SMDK ++K +    G+P+ P I + +   D           ++  +  
Sbjct: 122 PYVGGDVMSTSISMDKEKTKMIWDYSGLPIVPYIAIKKQDWDDPEKKKALLARAEKDLEY 181

Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA- 185
           P  IKP + GSS+G  ++K    +     +S  W   +++L+E  ++  E+ C V G+  
Sbjct: 182 PLFIKPCRAGSSVGAGMVKNRNELLEQAEESFLW--DNKILVEACIEAREVECSVTGNTK 239

Query: 186 -SLDVTEIAVPKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
               +    +P   FY YE KY+  N   + +PA +     K ++  A  A++A+   G+
Sbjct: 240 TVAYIPGEIIPTHKFYDYEAKYTDPNGAELKIPADLNETQRKTIRETAIKAYEALDLSGL 299

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           SR DF  D  + K++  E+N  PG T +S+FP+M   +G  + EL++ ++E A
Sbjct: 300 SRVDFFIDKRTGKIYLNEVNTIPGFTSISMFPKMCGASGLPYNELIMHLIELA 352


>gi|302865845|ref|YP_003834482.1| D-alanine/D-alanine ligase [Micromonospora aurantiaca ATCC 27029]
 gi|315502390|ref|YP_004081277.1| d-alanine/d-alanine ligase [Micromonospora sp. L5]
 gi|302568704|gb|ADL44906.1| D-alanine/D-alanine ligase [Micromonospora aurantiaca ATCC 27029]
 gi|315409009|gb|ADU07126.1| D-alanine/D-alanine ligase [Micromonospora sp. L5]
          Length = 367

 Score =  306 bits (785), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 96/359 (26%), Positives = 163/359 (45%), Gaps = 62/359 (17%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +A++ GG S E  +S  S  +  +AL+   F+V  + + R    VLA   P         
Sbjct: 9   VAIVFGGRSPEHGISCVSAGSVLAALDPDEFEVVPVGITRQGQWVLASGDPSGLAIADRK 68

Query: 52  --------------------------------------DLAFNVLHGNFGEDGLVQAILE 73
                                                 D+ F VLHG +GEDG +Q +LE
Sbjct: 69  LPEITAGSGAELVLRADPAVGGLMVLDPAQGPVALADVDVVFPVLHGAYGEDGTIQGMLE 128

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF---TMDSQHLISPPYVI 130
           + +IPY  + + ASA +MDK  +K++ ++ G+PV P  ++      + + +  +  P  +
Sbjct: 129 MADIPYVGANVFASAAAMDKEFTKKLCAAEGIPVGPYAVLRAGMSLSDEDKERLGLPVFV 188

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190
           KP + GSS GI  +     +   L+  ++     ++L+E  V G E+ CGV+   +    
Sbjct: 189 KPSRAGSSFGITKVDDWADLDAALV--TAREIDSKVLVEGAVVGREIECGVLEGEAGGAP 246

Query: 191 EIAV-------PKSDFYSYELKYSSLN--STHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241
           E +V          D+Y +E KY   +    + +PA +P  + ++V+  A  A  A+ C 
Sbjct: 247 EASVLAEVRMIGDRDWYDFEAKYIFADEVCEYDVPADLPEPVARQVRDYATRAFTALDCS 306

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           G++R DF   P    V+  EIN  PG TP S+FP M + +G  + +L+  ++  A   R
Sbjct: 307 GLARVDFFVTPQMD-VYLNEINTMPGFTPTSMFPRMWSASGLEYPKLVNRLIRTALHRR 364


>gi|152987968|ref|YP_001346283.1| D-alanine-D-alanine ligase A [Pseudomonas aeruginosa PA7]
 gi|150963126|gb|ABR85151.1| D-alanine-D-alanine ligase A [Pseudomonas aeruginosa PA7]
          Length = 346

 Score =  306 bits (785), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 103/326 (31%), Positives = 159/326 (48%), Gaps = 37/326 (11%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50
           +AVL GG S ER+VS++SG     AL  AG +V  +D    +       +          
Sbjct: 8   VAVLFGGSSEERDVSIASGAQVIQALRSAGHEVLAVDTASGLLGAEEERRLLASKVKEVP 67

Query: 51  ------------------------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
                                    D+ F  LHG  GEDG +QA+L+     YT SG LA
Sbjct: 68  PDSDSLAIIRSGKQGLLSAGELAGVDVFFLALHGGTGEDGTLQALLDAGGFAYTGSGHLA 127

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           SA++MDK  +K++  + GV     ++        +  +  P V+KP   GS++G+ ++  
Sbjct: 128 SAMAMDKDVAKRLFLAAGVETASWLMAPASEEAVREQLGFPLVVKPNSQGSTVGLSIVHS 187

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
              +   +  +    +GD++++E++V G E+T GV+ D +L V EI +   + + YE KY
Sbjct: 188 QAELQPAIELAG--RYGDEVMLERFVAGREVTVGVLDDQALPVGEILLGGQEVFDYEHKY 245

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
            +     V PA +P  +  E QRLA   H+A+   G SR+DF  D   R ++ LE+N  P
Sbjct: 246 QAGAVREVFPADLPPAVAAEAQRLALKVHRALKLSGYSRTDFRLDEQGR-LWCLEVNTLP 304

Query: 267 GMTPVSIFPEMAAYAGYSFRELLLWM 292
           GMT  S+ P+ AA AG  F EL   +
Sbjct: 305 GMTATSLLPQAAAAAGIGFAELCERI 330


>gi|313895994|ref|ZP_07829548.1| UDP-N-acetylmuramate--L-alanine ligase [Selenomonas sp. oral taxon
           137 str. F0430]
 gi|312975419|gb|EFR40880.1| UDP-N-acetylmuramate--L-alanine ligase [Selenomonas sp. oral taxon
           137 str. F0430]
          Length = 776

 Score =  306 bits (785), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 107/311 (34%), Positives = 172/311 (55%), Gaps = 15/311 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-SVGLVLAHLKPDLAFNVLH 59
           +AV+MGG S+E EVS  SG A   AL +  +    I+++  +    +  L+P L FN LH
Sbjct: 470 IAVVMGGPSTEAEVSRRSGAAILHALHEKNYPAVGIELNPATFAEEIKKLRPALVFNALH 529

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN----- 114
           G +GEDG++Q  L++L IPYT SG+ A+AL+MDK  +K++ ++ G+              
Sbjct: 530 GKYGEDGVLQGTLDMLGIPYTGSGVRAAALTMDKTSAKRIFAAEGIATPRFRSFYAGTDT 589

Query: 115 -RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
            +   +     S P V+K  + GSS+G+ ++ ++  +   L +  ++++G ++L+E+++ 
Sbjct: 590 GKIAEEILAAFSLPVVVKAPEQGSSIGVYIVTEEDDLRSSLDE--AFSYGGEVLVEEFIA 647

Query: 174 GIELTCGVMGD----ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           G ELT  V G+     +L V EI    S  Y YE KY+   S H++PA I  +   EVQ 
Sbjct: 648 GRELTVVVWGETGHAEALPVIEITT-TSGRYDYESKYTPGASAHLVPAPISPECTAEVQE 706

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           LA  A  A GC G++R D +    + K + +E+N  PGMT  S+ P+ A   G SF +L 
Sbjct: 707 LAVRAFNACGCTGVARLDVMLSE-TEKPYAIEVNSVPGMTETSLVPDAARAVGLSFPDLC 765

Query: 290 LWMVEDASCLR 300
             ++E A   R
Sbjct: 766 EKILEMAGYQR 776


>gi|229150808|ref|ZP_04279020.1| D-alanine--D-alanine ligase [Bacillus cereus m1550]
 gi|228632597|gb|EEK89214.1| D-alanine--D-alanine ligase [Bacillus cereus m1550]
          Length = 304

 Score =  306 bits (785), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 89/303 (29%), Positives = 162/303 (53%), Gaps = 9/303 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGG+SSE++VS+ +G    + L+   +++  I ++  V L+      D A   LHG
Sbjct: 3   IGVIMGGVSSEKQVSIMTGNEMIAHLDKNKYEIVPITLNEKVDLIEKAKDIDFALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117
            +GEDG VQ  LE L IPY+ S +L+S++ MDK  SK+++   GV     I + +     
Sbjct: 63  KYGEDGTVQGTLESLGIPYSGSNMLSSSICMDKNISKKILRYEGVETPDWIELTKMEDLN 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
           +D    +  P V+KP  GGSS+G+ ++     +    +  + +    +++IE+Y+ G E+
Sbjct: 123 LDELDKLGFPLVVKPNSGGSSVGVKIVYNKNELIS--MLETVFEWDSEVVIEKYIKGDEI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC ++    L +  I    ++F+ Y  KY   ++   +  ++P +I + V + +   ++A
Sbjct: 181 TCSILDGKQLPIVSIR-HAAEFFDYNAKYDDTSTVEEV-IELPAEIKERVNKASLACYKA 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           + C   +R D +        + +EIN  PGMT  S+ P+ A  AG S+ +LL  ++E + 
Sbjct: 239 LKCSVYARVDMMV--KDGIPYVMEINTLPGMTQSSLLPKSAEAAGISYSKLLDMIIETSL 296

Query: 298 CLR 300
            +R
Sbjct: 297 KVR 299


>gi|307705390|ref|ZP_07642249.1| D-alanine-D-alanine ligase [Streptococcus mitis SK597]
 gi|307621053|gb|EFO00131.1| D-alanine-D-alanine ligase [Streptococcus mitis SK597]
          Length = 347

 Score =  306 bits (785), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 98/334 (29%), Positives = 161/334 (48%), Gaps = 41/334 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKV--------------------------- 33
           + +L GG S+EREVS+ S ++   A+    F V                           
Sbjct: 5   IILLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDFIKTQEFSQTPGQEDRL 64

Query: 34  ---SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
                ID D+ V     + +  + F VLHG  GEDG VQ  LE+L++PY    IL+S+L+
Sbjct: 65  MTNETIDWDKQVAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLA 124

Query: 91  MDKMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
           MDK+ +K+V+ S G+   P +       V     + +  ++ P   KP   GSS+GI   
Sbjct: 125 MDKITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLTYPVFTKPSNMGSSVGISKS 184

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202
           +  + +   L    ++ +  ++L+EQ V+  E+  G++G+  +  T     V    FY Y
Sbjct: 185 ENQEELRQAL--ELAFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDY 242

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
           + KY     T  +PAKI  D+   +++ A  A +AIG  G+SR DF +     ++F  E+
Sbjct: 243 DAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDFFYTDK-GEIFLNEL 301

Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           N  PG T  S++P +    G S+ +L+  +V+ A
Sbjct: 302 NTMPGFTQWSMYPLLWDNMGISYPDLIERLVDLA 335


>gi|223043955|ref|ZP_03613996.1| D-alanine--D-alanine ligase (D-alanylalanine
           synthetase)(D-Ala-D-Ala ligase) [Staphylococcus capitis
           SK14]
 gi|314934154|ref|ZP_07841515.1| D-alanine--D-alanine ligase [Staphylococcus caprae C87]
 gi|222442670|gb|EEE48774.1| D-alanine--D-alanine ligase (D-alanylalanine
           synthetase)(D-Ala-D-Ala ligase) [Staphylococcus capitis
           SK14]
 gi|313653059|gb|EFS16820.1| D-alanine--D-alanine ligase [Staphylococcus caprae C87]
          Length = 356

 Score =  306 bits (785), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 81/339 (23%), Positives = 149/339 (43%), Gaps = 46/339 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           + ++ GG S+E +VS+ + +   +A+    +++  I +                      
Sbjct: 6   ICIVFGGKSAEHDVSILTAQNVLNAINKDQYQIDIIYITNDGEWKKKENITDEIKSTDEL 65

Query: 49  --------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
                                  D  F +LHG  GEDG +Q + E+L+IPY  +G+LA++
Sbjct: 66  VLNNVEAGEISQLLSKGSTGRSYDAVFPLLHGPNGEDGTIQGLFEVLDIPYVGNGVLAAS 125

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSL 139
            SMDK+  KQ+    G+P  P I   R   +             ++ P  +KP   GSS+
Sbjct: 126 SSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYENNIIKLVNDKLTYPVFVKPANLGSSV 185

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKS 197
           GI     ++ +   + ++  ++   +L+IEQ ++  E+   V+G+   + T     V   
Sbjct: 186 GISKCNNEEELKSGIEEAFQFDR--KLVIEQGIEAREIEVAVLGNDYPETTWPGEVVKDV 243

Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
            FY Y+ KY        +PA +  D+   ++ +A  A +A  C G+ R+DF       ++
Sbjct: 244 AFYDYKSKYKDGKVQLQIPADLDQDVQMTLRNMALEAFKATDCSGLVRADFFVTE-DNQI 302

Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +  E N  PG T  S++P +    G S+ +L+  ++  A
Sbjct: 303 YINETNAMPGFTSFSMYPSLWENMGLSYPDLIAKLINLA 341


>gi|325660968|ref|ZP_08149595.1| hypothetical protein HMPREF0490_00327 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325472475|gb|EGC75686.1| hypothetical protein HMPREF0490_00327 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 352

 Score =  306 bits (785), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 91/343 (26%), Positives = 165/343 (48%), Gaps = 49/343 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS------------------- 41
           +AV+ GG SSE EVS  S     S ++   ++   I + +                    
Sbjct: 8   VAVIFGGQSSEHEVSCKSAVTVISHIDRTKYEPVLIGITKEGCWLKVEDTEAIRNDTWRE 67

Query: 42  ------------------VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                             +G  +  ++ D+ F VLHG +GEDG +Q + EL +IPY   G
Sbjct: 68  NGKRAILSPDAGEHGILVLGDTVEKIQVDVIFPVLHGMYGEDGTIQGLFELAKIPYVGCG 127

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--------QHLISPPYVIKPLKG 135
           +LASA+SMDK+ +K +V   G+     + ++ + ++         + ++  P  +KP K 
Sbjct: 128 VLASAVSMDKLYTKIIVDRLGIRQAKFVGIHAYELEEIDKALDKVEEVLPYPVFVKPSKA 187

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195
           GSS G+   K  + +   LL+++   H  ++L+E+ + G E+ C V+G  ++  +++   
Sbjct: 188 GSSQGVNQAKDREELQAALLEAA--KHDTKILVEETIKGREIECAVLGGKNVKASDVGEI 245

Query: 196 K--SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
           K    FY+YE KY++ +S      ++P    ++V+  A    +A+   G+SR DF  +  
Sbjct: 246 KAADTFYTYEAKYNNPDSKTDTHPELPEGALEKVREDAVAIFKAVDGFGLSRVDFFLEHG 305

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           + +V + EIN  PG T +S++P +    G     L+  ++E A
Sbjct: 306 TNEVIFNEINTLPGFTNISMYPMLWREKGVDTTALVTELIELA 348


>gi|228921296|ref|ZP_04084622.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|229190695|ref|ZP_04317691.1| D-alanine--D-alanine ligase [Bacillus cereus ATCC 10876]
 gi|228592828|gb|EEK50651.1| D-alanine--D-alanine ligase [Bacillus cereus ATCC 10876]
 gi|228838355|gb|EEM83670.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 304

 Score =  306 bits (785), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 89/303 (29%), Positives = 162/303 (53%), Gaps = 9/303 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGG+SSE++VS+ +G    + L+   +++  I ++  V L+      D A   LHG
Sbjct: 3   IGVIMGGVSSEKQVSIMTGNEMIAHLDKNKYEIVPITLNEKVDLIEKAKDIDFALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117
            +GEDG VQ  LE L IPY+ S +L+S++ MDK  SK+++   GV     I + +     
Sbjct: 63  KYGEDGTVQGTLESLGIPYSGSNMLSSSICMDKNISKKILRYEGVETPDWIELTKMEDLN 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
           +D    +  P V+KP  GGSS+G+ ++     +    +  + +    +++IE+Y+ G E+
Sbjct: 123 LDELDKLGFPLVVKPNSGGSSVGVKIVYNKNELIS--MLETVFEWDSEVVIEKYIKGDEI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC ++    L +  I    ++F+ Y  KY   ++   +  ++P +I + V + +   ++A
Sbjct: 181 TCSILDGKQLPIVSIR-HAAEFFDYNAKYDDTSTVEEV-IELPAEINERVNKASLACYKA 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           + C   +R D +        + +EIN  PGMT  S+ P+ A  AG S+ +LL  ++E + 
Sbjct: 239 LKCSVYARVDMMV--KDGIPYVMEINTLPGMTQSSLLPKSAEAAGISYSKLLDMIIETSL 296

Query: 298 CLR 300
            +R
Sbjct: 297 KVR 299


>gi|108798897|ref|YP_639094.1| D-alanyl-alanine synthetase A [Mycobacterium sp. MCS]
 gi|119868012|ref|YP_937964.1| D-alanyl-alanine synthetase A [Mycobacterium sp. KMS]
 gi|123179010|sp|Q1BAP6|DDL_MYCSS RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|167012329|sp|A1UEB6|DDL_MYCSK RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|108769316|gb|ABG08038.1| D-alanine--D-alanine ligase [Mycobacterium sp. MCS]
 gi|119694101|gb|ABL91174.1| D-alanine--D-alanine ligase [Mycobacterium sp. KMS]
          Length = 371

 Score =  306 bits (785), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 101/361 (27%), Positives = 163/361 (45%), Gaps = 66/361 (18%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +AV+ GG SSE  +S  S  +    L+   F V  + +      VL   +P         
Sbjct: 10  VAVVYGGRSSEHAISCVSAGSILRNLDPERFDVVAVGITPDGSWVLTDGRPETLAITDGR 69

Query: 52  ---------------------------------------DLAFNVLHGNFGEDGLVQAIL 72
                                                  D+ F VLHG +GEDG +Q +L
Sbjct: 70  LPEVSAESGTALALPADPGRRGELVSLSPAAAGEVLAAVDVVFPVLHGPYGEDGTIQGLL 129

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF----TMDSQHLISPPY 128
           EL  +PY  +G+LASA  MDK  +K+++ + G+PV   +++       T+D +  +  P 
Sbjct: 130 ELAGVPYVGAGVLASAAGMDKEFTKKLLVAEGLPVGDHVVLRPGRANVTLDERERLGLPV 189

Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD---- 184
            +KP +GGSS+G+  +     +P  +   ++  H  ++++E  + G EL CGV+      
Sbjct: 190 FVKPARGGSSIGVSRVSDWAELPAAI--EAARRHDPKVIVEAGIAGRELECGVLEYPDGR 247

Query: 185 -ASLDVTEIAVP-----KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             +  + EI V      +  FY +  KY    +   +PAK+  D+  E++RLA  A +AI
Sbjct: 248 VDASTIGEIRVAGVRGREDGFYDFATKYLDDGAELDVPAKVEDDVADEIRRLAIRAFRAI 307

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
            C+G++R DF            EIN  PG T +S++P M A +G  +  LL  MV+ A  
Sbjct: 308 DCQGLARVDFFLT--DDGPVVNEINTMPGFTTISMYPRMWAASGVDYPTLLAAMVDTAVA 365

Query: 299 L 299
            
Sbjct: 366 R 366


>gi|107103718|ref|ZP_01367636.1| hypothetical protein PaerPA_01004789 [Pseudomonas aeruginosa PACS2]
 gi|116052238|ref|YP_788918.1| D-alanine-D-alanine ligase A [Pseudomonas aeruginosa UCBPP-PA14]
 gi|218889470|ref|YP_002438334.1| D-alanine-D-alanine ligase A [Pseudomonas aeruginosa LESB58]
 gi|254242882|ref|ZP_04936204.1| D-alanine-D-alanine ligase A [Pseudomonas aeruginosa 2192]
 gi|296387248|ref|ZP_06876747.1| D-alanyl-alanine synthetase A [Pseudomonas aeruginosa PAb1]
 gi|313109649|ref|ZP_07795593.1| D-alanine-D-alanine ligase A [Pseudomonas aeruginosa 39016]
 gi|115587459|gb|ABJ13474.1| D-alanine-D-alanine ligase A [Pseudomonas aeruginosa UCBPP-PA14]
 gi|126196260|gb|EAZ60323.1| D-alanine-D-alanine ligase A [Pseudomonas aeruginosa 2192]
 gi|218769693|emb|CAW25453.1| D-alanine-D-alanine ligase A [Pseudomonas aeruginosa LESB58]
 gi|310882095|gb|EFQ40689.1| D-alanine-D-alanine ligase A [Pseudomonas aeruginosa 39016]
          Length = 346

 Score =  306 bits (785), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 104/326 (31%), Positives = 159/326 (48%), Gaps = 37/326 (11%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50
           +AVL GG S ER+VS++SG     AL  AG +V  +D    +       +          
Sbjct: 8   VAVLFGGSSEERDVSIASGAQVIQALRSAGHQVLAVDTASGLLGAEEERRLLASKVKEVP 67

Query: 51  ------------------------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
                                    D+ F  LHG  GEDG +QA+L+     YT SG LA
Sbjct: 68  PDSDSLAIIRSGKQSLLSAGELAGVDVFFLALHGGTGEDGTLQALLDAGGFAYTGSGHLA 127

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           SA++MDK  +K++  + GV     ++        +  +  P V+KP   GS++G+ ++  
Sbjct: 128 SAMAMDKDVAKRLFLAAGVETASWLMAPASEEAVREQLGFPLVVKPNSQGSTVGLSIVHS 187

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
              +   +  +    +GD++++E++V G E+T GV+ D +L V EI +   + + YE KY
Sbjct: 188 QAELQPAIELAG--RYGDEVMLERFVAGREVTVGVLDDQALPVGEILLGGQEVFDYEHKY 245

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
            +     V PA +P  I  E QRLA   H+A+   G SR+DF  D   R ++ LE+N  P
Sbjct: 246 QAGAVREVFPADLPPAIAAEAQRLALKVHRALKLSGYSRTDFRLDEQGR-LWCLEVNTLP 304

Query: 267 GMTPVSIFPEMAAYAGYSFRELLLWM 292
           GMT  S+ P+ AA AG  F EL   +
Sbjct: 305 GMTATSLLPQAAAAAGIGFAELCERI 330


>gi|229491375|ref|ZP_04385199.1| D-alanine--D-alanine ligase [Rhodococcus erythropolis SK121]
 gi|229321660|gb|EEN87457.1| D-alanine--D-alanine ligase [Rhodococcus erythropolis SK121]
          Length = 368

 Score =  306 bits (785), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 102/360 (28%), Positives = 162/360 (45%), Gaps = 65/360 (18%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +AV+ GG S+E  VS  S  +  S L+   + V  I +      VL    P         
Sbjct: 8   VAVIFGGRSNEHSVSCVSAGSVLSNLDPDRYDVVPIGITVDGSWVLGSSDPSSLAIRGRA 67

Query: 52  --------------------------------------DLAFNVLHGNFGEDGLVQAILE 73
                                                 D+ F VLHG +GEDG +Q +LE
Sbjct: 68  LPSVDKDGTSVVLSADPTREGEVISFDGSDAGAVLASVDVVFPVLHGAYGEDGTIQGLLE 127

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF----TMDSQHLISPPYV 129
           L  +PY   G+LASA  MDK  +K+++++ G+PV   +++       T + +  +  P  
Sbjct: 128 LAGVPYVGPGVLASAAGMDKEFTKKLLAAEGLPVGVQVVLRPGTATLTEEQKAELGLPVF 187

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM----GDA 185
           +KP +GGSS+GI  +       LD   + +  H  ++++E  + G E+ CGV+    GD 
Sbjct: 188 VKPARGGSSIGITRVSNWD--GLDGAIAHARLHDPKVIVEGAIIGREVECGVLEFPNGDV 245

Query: 186 SLDVT-EIAVPKSD-----FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
              V  EI +P SD     FY ++ KY        +PAK+   +  +++ LA  A +A+ 
Sbjct: 246 KASVVAEIRMPDSDADSDAFYDFDTKYLDDVCEFDIPAKLDESVSDQIRELAVRAFKALD 305

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
           C+G+SR DF            EIN  PG T +S++P+M    G  +R L+  +V+ A   
Sbjct: 306 CQGLSRVDFFVTADG--PVINEINTMPGFTSISMYPKMWNATGIDYRTLISTLVDTAVAR 363


>gi|190570829|ref|YP_001975187.1| D-alanine--D-alanine ligase [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|229486023|sp|B3CPK8|DDL_WOLPP RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|190357101|emb|CAQ54511.1| D-alanine--D-alanine ligase [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
          Length = 317

 Score =  306 bits (785), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 118/302 (39%), Positives = 184/302 (60%), Gaps = 5/302 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +A+L GG S ERE+SL SGKA   AL+   +   +IDVD ++   L    P LAF  LHG
Sbjct: 7   IAILSGGFSCEREISLMSGKAVKKALDSLSYNAIEIDVDSNIAQKLKKTNPALAFIALHG 66

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG +Q +LE+L I YTHS ++ASA++M+K+ SK +  S  +      +++R  +  
Sbjct: 67  PYGEDGCIQGLLEILGIKYTHSEVMASAVAMNKVMSKHIFHSLNIDTPRGYVISREDVLK 126

Query: 121 QHL-ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
            ++ +  PYV+KP+  GSS+G+ +I   +   L+L  +SS    ++++IE+Y+ GIEL  
Sbjct: 127 NNIKVDYPYVLKPINEGSSIGVHMIFSHEDY-LELKNNSS-TIMEKMIIEEYIPGIELHT 184

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
            V+ + ++   EI  PK+ FY YE KY+   + H+ PA+IP +IY+     A   HQ +G
Sbjct: 185 AVLLNEAIGTMEIR-PKNKFYDYEAKYTDGFAEHIFPAEIPNNIYRITLEHALKVHQFLG 243

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYA-GYSFRELLLWMVEDASC 298
           C+ +SRSDF ++P +  +  LE+N  PG T +S+ PE+A    G  F EL+  +VED+  
Sbjct: 244 CKTVSRSDFRYNPQNNTLKMLEVNTHPGFTELSLVPEIAKLTRGIDFNELVKIIVEDSLH 303

Query: 299 LR 300
            R
Sbjct: 304 HR 305


>gi|257785158|ref|YP_003180375.1| D-alanine/D-alanine ligase [Atopobium parvulum DSM 20469]
 gi|257473665|gb|ACV51784.1| D-alanine/D-alanine ligase [Atopobium parvulum DSM 20469]
          Length = 319

 Score =  306 bits (784), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 117/312 (37%), Positives = 172/312 (55%), Gaps = 16/312 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGF-KVSQIDV-DRSVGLVLAHLKPDLAFNVL 58
           +AV+ GG S E E+++ SGK CA+AL++AGF  V  +DV ++   + LA    D+ +  +
Sbjct: 11  VAVVSGGWSDEHEIAMESGKQCAAALKEAGFINVDLLDVAEKDFVVALAQGDYDVVYVAM 70

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
           HG FGEDG +Q +LE+L IPYT SG+LASA+  +K  SK +    G+P    I V   T+
Sbjct: 71  HGRFGEDGCIQGLLEILHIPYTFSGVLASAMGTEKELSKLMYRQAGIPTPRGIDVPSGTV 130

Query: 119 DSQHL-------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
            +          +  P  +KP   GSS G+  +   + +P  L  +     G+++LIE+ 
Sbjct: 131 FTDEQVDKLIEDLGFPMFVKPSGNGSSYGVTRVTSREELPAALKLAG--EQGERILIEEC 188

Query: 172 VDGIELTCGVMGDA---SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           V G E+T  V+G+    +L + EI V   +FYS + KY   +  HV+PA++   +Y   Q
Sbjct: 189 VVGTEITVPVIGNDNPTALPIVEI-VTGDEFYSIKTKYEPASLHHVIPARLEPAVYARAQ 247

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
            LA  AH A+GCRG+SRSDF+      +   LE N  PGMT  S+ P+ A   G  F EL
Sbjct: 248 ELAIKAHNALGCRGVSRSDFIVTE-DGEPVVLETNTIPGMTARSLLPDSARTGGIDFPEL 306

Query: 289 LLWMVEDASCLR 300
               +E A   R
Sbjct: 307 CTRFIEFALEDR 318


>gi|213019645|ref|ZP_03335450.1| D-alanine--D-alanine ligase [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
 gi|212994686|gb|EEB55329.1| D-alanine--D-alanine ligase [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
          Length = 315

 Score =  306 bits (784), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 118/302 (39%), Positives = 184/302 (60%), Gaps = 5/302 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +A+L GG S ERE+SL SGKA   AL+   +   +IDVD ++   L    P LAF  LHG
Sbjct: 5   IAILSGGFSCEREISLMSGKAVKKALDSLSYNAIEIDVDSNIAQKLKKTNPALAFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG +Q +LE+L I YTHS ++ASA++M+K+ SK +  S  +      +++R  +  
Sbjct: 65  PYGEDGCIQGLLEILGIKYTHSEVMASAVAMNKVMSKHIFHSLNIDTPRGYVISREDVLK 124

Query: 121 QHL-ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
            ++ +  PYV+KP+  GSS+G+ +I   +   L+L  +SS    ++++IE+Y+ GIEL  
Sbjct: 125 NNIKVDYPYVLKPINEGSSIGVHMIFSHEDY-LELKNNSS-TIMEKMIIEEYIPGIELHT 182

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
            V+ + ++   EI  PK+ FY YE KY+   + H+ PA+IP +IY+     A   HQ +G
Sbjct: 183 AVLLNEAIGTMEIR-PKNKFYDYEAKYTDGFAEHIFPAEIPNNIYRITLEHALKVHQFLG 241

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYA-GYSFRELLLWMVEDASC 298
           C+ +SRSDF ++P +  +  LE+N  PG T +S+ PE+A    G  F EL+  +VED+  
Sbjct: 242 CKTVSRSDFRYNPQNNTLKMLEVNTHPGFTELSLVPEIAKLTRGIDFNELVKIIVEDSLH 301

Query: 299 LR 300
            R
Sbjct: 302 HR 303


>gi|330466252|ref|YP_004403995.1| D-alanine--D-alanine ligase [Verrucosispora maris AB-18-032]
 gi|328809223|gb|AEB43395.1| D-alanine--D-alanine ligase [Verrucosispora maris AB-18-032]
          Length = 368

 Score =  306 bits (784), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 92/358 (25%), Positives = 158/358 (44%), Gaps = 62/358 (17%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +A++ GG S E  +S  S  +   AL+   F+V  + + R+   VL    P         
Sbjct: 9   VAIVFGGRSPEHGISCVSAGSVLGALDPDEFEVVPVGITRAGQWVLTSGDPTELAINSRR 68

Query: 52  --------------------------------------DLAFNVLHGNFGEDGLVQAILE 73
                                                 D+ F VLHG +GEDG +Q +LE
Sbjct: 69  LPEITAESGADIVLRADPTGSGLLVLDPTEGPRALANVDVVFPVLHGAYGEDGTIQGMLE 128

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF---TMDSQHLISPPYVI 130
           +  IPY  + + ASA +MDK  +K++ ++ G+P+ P  ++      + + +  +  P  +
Sbjct: 129 MAGIPYVGAKVFASAAAMDKEFTKKICAAEGIPIGPYAVLRSGMTLSEEDKQRLGLPVFV 188

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190
           KP + GSS G+  +     +   +    +     ++L+E  + G E+ CGV+   +    
Sbjct: 189 KPSRAGSSFGVSKVSDWADLEAAIAI--AREIDSKVLVEGAIIGREIECGVLEGEAGGTP 246

Query: 191 E-------IAVPKSDFYSYELKYSSLNS--THVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241
           E         V   DFY +E KY    S   + +PA +P  + ++V+  A  A  A+ C 
Sbjct: 247 EASVLAEVRVVGDYDFYDFEAKYIDAESACEYDVPADLPERVARQVRDYAVRAFTALDCA 306

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
           G++R+DF   P    ++  EIN  PG TP S+FP M A +G  + +L+  ++  A   
Sbjct: 307 GLARADFFVTP-ELDIYLNEINTMPGFTPTSMFPRMWAASGLEYPKLVDRLIRTALTR 363


>gi|148378455|ref|YP_001252996.1| D-alanine--D-alanine ligase [Clostridium botulinum A str. ATCC
           3502]
 gi|153932745|ref|YP_001382844.1| D-alanine--D-alanine ligase [Clostridium botulinum A str. ATCC
           19397]
 gi|153937340|ref|YP_001386411.1| D-alanine--D-alanine ligase [Clostridium botulinum A str. Hall]
 gi|168177798|ref|ZP_02612462.1| D-alanine--D-alanine ligase [Clostridium botulinum NCTC 2916]
 gi|226947688|ref|YP_002802779.1| D-alanine--D-alanine ligase [Clostridium botulinum A2 str. Kyoto]
 gi|166198478|sp|A7FPH8|DDL_CLOB1 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|166198479|sp|A5HYZ6|DDL_CLOBH RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|254767724|sp|C1FSC4|DDL_CLOBJ RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|148287939|emb|CAL82005.1| D-alanine--d-alanine ligase B [Clostridium botulinum A str. ATCC
           3502]
 gi|152928789|gb|ABS34289.1| D-alanine--D-alanine ligase [Clostridium botulinum A str. ATCC
           19397]
 gi|152933254|gb|ABS38753.1| D-alanine--D-alanine ligase [Clostridium botulinum A str. Hall]
 gi|182670658|gb|EDT82632.1| D-alanine--D-alanine ligase [Clostridium botulinum NCTC 2916]
 gi|226843805|gb|ACO86471.1| D-alanine--D-alanine ligase [Clostridium botulinum A2 str. Kyoto]
          Length = 300

 Score =  306 bits (784), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 96/297 (32%), Positives = 157/297 (52%), Gaps = 9/297 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGGIS+EREVSL+SG+     LE    ++  I +D+   ++      D AF  LHG
Sbjct: 3   IGVIMGGISTEREVSLNSGREVIKYLELLEHEIIPIIIDKKEDVMEKAKGIDFAFLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI---LVNRFT 117
            FGEDG VQ++L+ L+IPY+  G L SA+ MDK  +K+++    +     +    V    
Sbjct: 63  KFGEDGTVQSVLQTLDIPYSGCGPLTSAICMDKDMTKKILKYANINTADWVNVSSVENID 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            ++   I  P  +KP  GGSS+   ++K  + I   +  +    +  +++IE Y  G E+
Sbjct: 123 YEAIEKIGYPVFVKPNSGGSSVATNLVKDKEGIKEAVELAL--KYDKEVMIENYTKGEEI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC ++    L V  I  P ++F+ Y  KY+   S  V+  ++  +++K+V+ +A    + 
Sbjct: 181 TCCMLNGKMLPVLAIR-PHAEFFDYTAKYADGGSDEVV-IELEENLHKKVEEMALACWKE 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           + C    R D +        + LE+N  PGMT  S+FP+ A   G SF ELL  +V+
Sbjct: 239 LKCEVYVRVDMIV--KDGIPYVLELNTLPGMTKNSLFPKSANAVGISFAELLNSIVK 293


>gi|29829221|ref|NP_823855.1| D-alanyl-alanine synthetase A [Streptomyces avermitilis MA-4680]
 gi|39930866|sp|Q82JS5|DDL_STRAW RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|29606327|dbj|BAC70390.1| putative D-alanine-D-alanine ligase [Streptomyces avermitilis
           MA-4680]
          Length = 385

 Score =  306 bits (784), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 101/363 (27%), Positives = 161/363 (44%), Gaps = 71/363 (19%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +AV+ GG SSE  +S+ +  A   A++   + V  I + R     L   +P         
Sbjct: 19  VAVVFGGRSSEHGISVVTAGAVLRAIDRTKYDVLPIGITRDGRWALTADEPERMAITDRR 78

Query: 52  -----------------------------------------DLAFNVLHGNFGEDGLVQA 70
                                                    D+ F VLHG +GEDG +Q 
Sbjct: 79  TPSVEELAESNEGGVILPVDPANREVVYSEPGSVPKALGEVDVVFPVLHGPYGEDGTLQG 138

Query: 71  ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM------------ 118
           +LEL  +PY  +G+LASA+  DK   K+V +S G+ V P +++                 
Sbjct: 139 LLELSGVPYVGAGVLASAVGQDKEYMKRVFTSFGLKVGPYVVIRPREWERDESAARRKIV 198

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           D       P  +KP + GSS+GI  +  D    LD   + +  H  ++++E  + G E+ 
Sbjct: 199 DFAGEHGWPLFVKPARAGSSIGITKV--DDLAGLDEAVAEAQRHDPKIIVEALLRGREIE 256

Query: 179 CGVM----GDASLDVTEIAVPKSD-FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           CGV+    G  +    EI   +S  +Y +E KY   ++  ++PA +  +   EV+RLA  
Sbjct: 257 CGVLEFEDGPRASVPAEIPPAQSHAYYDFEAKY-IDSTPGIVPAPLTPEETAEVRRLAVE 315

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           A +A  C G+ R+DF            EIN  PG TP+S++P+M   +G ++ EL+  +V
Sbjct: 316 AFEATSCEGLVRADFFLTE-DGDFVINEINTMPGFTPISMYPQMWQASGIAYPELVDRLV 374

Query: 294 EDA 296
           E A
Sbjct: 375 EAA 377


>gi|330815445|ref|YP_004359150.1| D-alanine--D-alanine ligase [Burkholderia gladioli BSR3]
 gi|327367838|gb|AEA59194.1| D-alanine--D-alanine ligase [Burkholderia gladioli BSR3]
          Length = 313

 Score =  306 bits (784), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 102/300 (34%), Positives = 151/300 (50%), Gaps = 11/300 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG+S+EREVSL SG      L +AG      D        L       AFN LHG
Sbjct: 12  VAVLLGGVSAEREVSLKSGTLVVQGLREAGIDAHPFDPSERPLAALKDEGYVRAFNALHG 71

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118
            +GE+G +Q  L+   I YT +G+L SAL +DK R+K V    G+P  P  +V       
Sbjct: 72  GYGENGQIQGALDFYGIRYTGTGVLGSALGLDKFRTKLVWQQTGIPTPPFEVVLCGDDYA 131

Query: 119 ----DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD- 173
               +    +  P  +KP   GSS+ +I +K      L      +  H   +L+E+ ++ 
Sbjct: 132 ARAPEIVAKLGLPLFVKPASEGSSVAVIKVKDA--AALPAALDEAARHDKIVLVEKSIEG 189

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           G E T  + GD  L V  I VP  +FY Y  KY + ++ +++P  I      EV+RLA  
Sbjct: 190 GGEYTACIAGDLDLPVIRI-VPAGEFYDYHAKYIADDTQYLIPCGIEAGREAEVKRLARR 248

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           A   +GC    R+DF+ D      ++LE+N  PGMT  S+ P+ A   G S+ EL++ ++
Sbjct: 249 AFDVLGCTDWGRADFMLDAAGN-PYFLEVNTAPGMTDHSLPPKAARAVGISYSELVVKVL 307


>gi|170757719|ref|YP_001780107.1| D-alanine--D-alanine ligase [Clostridium botulinum B1 str. Okra]
 gi|229463744|sp|B1IEG9|DDL_CLOBK RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|169122931|gb|ACA46767.1| D-alanine--D-alanine ligase [Clostridium botulinum B1 str. Okra]
          Length = 300

 Score =  306 bits (784), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 96/297 (32%), Positives = 158/297 (53%), Gaps = 9/297 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGGIS+EREVSL+SG+     LE    ++  I +D+   ++      D AF  LHG
Sbjct: 3   IGVIMGGISTEREVSLNSGREVIKYLELLEHEIIPIIIDKKEDVMEKAKGIDFAFLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF---T 117
            FGEDG VQ++L+ L+IPY+  G L SA+ MDK  +K+++    +     + V+      
Sbjct: 63  KFGEDGTVQSVLQTLDIPYSGCGPLTSAICMDKDMTKKILKYANINTADWVNVSSAENID 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            ++   I  P  +KP  GGSS+   ++K  + I   +  +    +  +++IE Y  G E+
Sbjct: 123 YEAIEKIGYPVFVKPNSGGSSVATNLVKDKEGIKEAVELAL--KYDKEVMIENYTKGEEI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC ++    L V  I  P ++F+ Y  KY+   S  V+  ++  +++K+V+ +A    + 
Sbjct: 181 TCCMLNGKMLPVLAIR-PHAEFFDYTAKYADGGSDEVV-IELEENLHKKVEEMALACWKE 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           + C    R D +        + LE+N  PGMT  S+FP+ A   G SF ELL  +V+
Sbjct: 239 LKCEVYVRVDMIV--KDGIPYVLELNTLPGMTKNSLFPKSANAVGISFAELLNSIVK 293


>gi|327399131|ref|YP_004340000.1| D-alanine--D-alanine ligase [Hippea maritima DSM 10411]
 gi|327181760|gb|AEA33941.1| D-alanine--D-alanine ligase [Hippea maritima DSM 10411]
          Length = 294

 Score =  306 bits (784), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 101/298 (33%), Positives = 158/298 (53%), Gaps = 9/298 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI--DVDRSVGLVLAHLKPDLAFNVL 58
           +AV+ GG SSERE+S+ +G A  + L    F+   I  D  R     +    P + F  L
Sbjct: 3   VAVVCGGNSSEREISIITGNAVYNGLLK-NFEAECIVCDNARDCLDKIIKSSPSVVFIAL 61

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
           HG FGE+G +QA LE L I +T      S ++M+K  +K ++    +P     L+ +   
Sbjct: 62  HGGFGENGQLQAALESLGIKHTGCSFAESNIAMNKFATKAILKKLSIPTAEFKLIKKVE- 120

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           + +++   P  IKP   GSS+ +     +       +  +     ++L+IE+ + G ELT
Sbjct: 121 EIENIDFYPICIKPNNEGSSVDVNFANNENQ--AKYISQNLLKKHNELIIEKRLSGKELT 178

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
            GV+   +L + EI  PKS FY Y+ KY+   + +++PA +  +I K ++ +A  A +AI
Sbjct: 179 VGVLFGKALPIIEIR-PKSGFYDYKNKYTKGATDYIVPAPLENNIEKLIKDIAVKAFEAI 237

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           GC+  +R DF+ D      + LEIN  PGMTP S+ P+ A  AG SF EL   +VE A
Sbjct: 238 GCKSYARIDFILD--GNVPYLLEINTIPGMTPTSLLPKAAKAAGISFEELTKMIVEGA 293


>gi|229110023|ref|ZP_04239600.1| D-alanine--D-alanine ligase [Bacillus cereus Rock1-15]
 gi|228673376|gb|EEL28643.1| D-alanine--D-alanine ligase [Bacillus cereus Rock1-15]
          Length = 304

 Score =  306 bits (784), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 88/303 (29%), Positives = 162/303 (53%), Gaps = 9/303 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGG+SSE++VS+ +G    + L+   +++  I ++  + L+      D A   LHG
Sbjct: 3   IGVIMGGVSSEKQVSIMTGNEMIAHLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117
            +GEDG VQ  LE L IPY+ S +L+S++ MDK  SK+++   GV     I + +     
Sbjct: 63  KYGEDGTVQGTLESLGIPYSGSNMLSSSICMDKNISKKILRYEGVETPDWIELTKMEDLN 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
           +D    +  P V+KP  GGSS+G+ ++     +    +  + +    +++IE+Y+ G E+
Sbjct: 123 LDELDKLGFPLVVKPNSGGSSVGVKIVYNKNELIS--MLETVFEWDSEVVIEKYIKGDEI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC ++    L +  I    ++F+ Y  KY   ++   +  ++P +I + V + +   ++A
Sbjct: 181 TCSILDGKQLPIVSIR-HAAEFFDYNAKYDDTSTVEEV-IELPAEIKERVNKASLACYKA 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           + C   +R D +        + +EIN  PGMT  S+ P+ A  AG S+ +LL  ++E + 
Sbjct: 239 LKCSVYARVDMMV--KDGIPYVMEINTLPGMTQSSLLPKSAEAAGISYSKLLDMIIETSL 296

Query: 298 CLR 300
            +R
Sbjct: 297 KVR 299


>gi|332687108|ref|YP_004456882.1| D-alanine--D-alanine ligase [Melissococcus plutonius ATCC 35311]
 gi|332371117|dbj|BAK22073.1| D-alanine--D-alanine ligase [Melissococcus plutonius ATCC 35311]
          Length = 356

 Score =  306 bits (784), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 86/342 (25%), Positives = 160/342 (46%), Gaps = 51/342 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---LAHLKPD----- 52
           + +L GG S E +VS+ S  +  +A+    + V  + + +    +   L   KP+     
Sbjct: 3   IILLYGGKSEEHDVSILSAYSILNAIYYEYYTVQLVLITKQGEWIKGPLLTEKPENKEIL 62

Query: 53  -----------------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                        + F VLHG  GEDG +Q  LE + +PY  +G
Sbjct: 63  NLTGAKDENTMAYSSGTSIMPCEIFEKDAIVFPVLHGPNGEDGTIQGFLETISMPYVGTG 122

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTMDSQHLIS-------PPYVIKPLK 134
           +LASA +MDK+ +K ++ + G+P  P + V  N +  DS+ L          P  +KP  
Sbjct: 123 VLASATAMDKIMTKYLLQTVGIPQTPYVPVLKNEWKNDSKQLFERCEGTLLYPMFVKPAN 182

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI-- 192
            GSS+GI  ++  + +   L    ++ +  ++++EQ ++  E+   ++G+  +  T    
Sbjct: 183 LGSSVGISKVENREELQKAL--ELAYKYDSRVIVEQGIEAREIEVAILGNEDVRTTLPGE 240

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            V   DFY Y+ KY     +  +PA++P ++ ++ Q  A  A++ +   G+SR DF    
Sbjct: 241 VVKNVDFYDYQAKYVDNQISMKIPAELPAEVCRQAQEYAKKAYKTLDGSGLSRCDFFLTN 300

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
              ++F  E+N  PG T  S++P +    G  + +L+  +++
Sbjct: 301 K-NELFLNELNTMPGFTEFSMYPSLWENMGLKYSDLIEELIQ 341


>gi|322388818|ref|ZP_08062415.1| D-alanine-D-alanine ligase [Streptococcus infantis ATCC 700779]
 gi|321140437|gb|EFX35945.1| D-alanine-D-alanine ligase [Streptococcus infantis ATCC 700779]
          Length = 347

 Score =  306 bits (784), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 100/334 (29%), Positives = 160/334 (47%), Gaps = 41/334 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKV--------------------------- 33
           + +L GG S+EREVS+ S ++   A+    F V                           
Sbjct: 5   IILLYGGRSAEREVSVLSAESVMRAVNYDRFAVKTFFISQSGDFIKTQEFTQTPSQDERL 64

Query: 34  ---SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
                ID D+ +     + +  + F VLHG  GEDG VQ  LE+L++PY    IL+S+L+
Sbjct: 65  MTNETIDWDKKIAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLA 124

Query: 91  MDKMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLISPPYVIKPLKGGSSLGIIVI 144
           MDK+ +K+V+ S G+   P + +           + +  +  P   KP   GSS+GI   
Sbjct: 125 MDKITTKRVLESAGIAQVPYVAIVEGDDLASKIAEVEEKLRYPVFTKPSNMGSSVGISKS 184

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202
           +  + +   L    ++ +  ++L+EQ V+  E+  G++G+  +  T     V    FY Y
Sbjct: 185 ENKEELHQAL--ELAFKYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDY 242

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
           E KY     T  +PAKI  D+   +++ A  A +AIG  G+SR DF +     +VF  E+
Sbjct: 243 EAKYIDNKITMDIPAKISDDVVAVMRKNAEAAFRAIGGLGLSRCDFFYTDK-GEVFLNEL 301

Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           N  PG T  S++P +    G S+ EL+  +VE A
Sbjct: 302 NTMPGFTQWSMYPLLWDNMGISYPELIERLVELA 335


>gi|228939729|ref|ZP_04102310.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228972592|ref|ZP_04133196.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228979199|ref|ZP_04139542.1| D-alanine--D-alanine ligase [Bacillus thuringiensis Bt407]
 gi|228780556|gb|EEM28780.1| D-alanine--D-alanine ligase [Bacillus thuringiensis Bt407]
 gi|228787133|gb|EEM35108.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228819961|gb|EEM66005.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar
           berliner ATCC 10792]
          Length = 304

 Score =  306 bits (784), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 88/303 (29%), Positives = 162/303 (53%), Gaps = 9/303 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGG+SSE++VS+ +G    + L+   +++  I ++  + L+      D A   LHG
Sbjct: 3   IGVIMGGVSSEKQVSIMTGNEMIAHLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117
            +GEDG VQ  LE L IPY+ S +L+S++ MDK  SK+++   GV     I + +     
Sbjct: 63  KYGEDGTVQGTLESLGIPYSGSNMLSSSICMDKNISKKILRYEGVETPDWIELTKMEDLN 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
           +D    +  P V+KP  GGSS+G+ ++     +    +  + +    +++IE+Y+ G E+
Sbjct: 123 LDELDKLGFPLVVKPNSGGSSVGVKIVYNKNELIS--MLETVFEWDSEVVIEKYIKGDEI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC ++    L +  I    ++F+ Y  KY   ++   +  ++P +I + V + +   ++A
Sbjct: 181 TCSILDGKQLPIVSIR-HAAEFFDYNAKYDDTSTVEEV-IELPAEINERVNKASLACYKA 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           + C   +R D +        + +EIN  PGMT  S+ P+ A  AG S+ +LL  ++E + 
Sbjct: 239 LKCSVYARVDMMV--KDGIPYVMEINTLPGMTQSSLLPKSAEAAGISYSKLLDMIIETSL 296

Query: 298 CLR 300
            +R
Sbjct: 297 KVR 299


>gi|228908338|ref|ZP_04072183.1| D-alanine--D-alanine ligase [Bacillus thuringiensis IBL 200]
 gi|228851379|gb|EEM96188.1| D-alanine--D-alanine ligase [Bacillus thuringiensis IBL 200]
          Length = 304

 Score =  306 bits (784), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 88/303 (29%), Positives = 162/303 (53%), Gaps = 9/303 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGG+SSE++VS+ +G    + L+   +++  I ++  + L+      D A   LHG
Sbjct: 3   IGVIMGGVSSEKQVSIMTGNEMIAHLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117
            +GEDG VQ  LE L IPY+ S +L+S++ MDK  SK+++   GV     I + +     
Sbjct: 63  KYGEDGTVQGTLESLGIPYSGSNMLSSSICMDKNISKKILRYEGVETPDWIELTKMEDLN 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
           +D    +  P V+KP  GGSS+G+ ++     +    +  + +    +++IE+Y+ G E+
Sbjct: 123 LDELDKLGFPLVVKPNSGGSSVGVKIVYNKNELIS--MLETVFEWDSEVVIEKYIKGDEI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC ++    L +  I    ++F+ Y  KY   ++   +  ++P +I + V + +   ++A
Sbjct: 181 TCSILDGKQLPIVSIR-HAAEFFDYNAKYDDTSTVEEV-IELPAEINERVNKASLACYKA 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           + C   +R D +        + +EIN  PGMT  S+ P+ A  AG S+ +LL  ++E + 
Sbjct: 239 LKCSVYARVDMMV--KDGIPYVMEINTLPGMTQSSLLPKSAEAAGISYSKLLDMIIETSL 296

Query: 298 CLR 300
            +R
Sbjct: 297 KVR 299


>gi|169832697|ref|YP_001695052.1| D-alanyl-alanine synthetase A [Streptococcus pneumoniae
           Hungary19A-6]
 gi|229486021|sp|B1I733|DDL_STRPI RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|168995199|gb|ACA35811.1| D-alanine--D-alanine ligase (D-alanylalanine
           synthetase)(D-Ala-D-Ala ligase) [Streptococcus
           pneumoniae Hungary19A-6]
          Length = 347

 Score =  306 bits (784), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 98/334 (29%), Positives = 161/334 (48%), Gaps = 41/334 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKV--------------------------- 33
           + +L GG S+EREVS+ S ++   A+    F V                           
Sbjct: 5   IILLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDFIKTQEFSQTPGQEDRL 64

Query: 34  ---SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
                ID D+ V     + +  + F VLHG  GEDG VQ  LE+L++PY    IL+S+L+
Sbjct: 65  MTNETIDWDKKVAPSAIYEERAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLA 124

Query: 91  MDKMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
           MDK+ +K+V+ S G+   P +       V     + +  ++ P   KP   GSS+GI   
Sbjct: 125 MDKITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEELTYPVFTKPSNMGSSVGISKS 184

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202
           +  + +   L    ++ +  ++L+EQ V+  E+  G++G+  +  T     V    FY Y
Sbjct: 185 ENQEELRQALKL--AFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDY 242

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
           + KY     T  +PAKI  D+   +++ A  A +AIG  G+SR DF +     ++F  E+
Sbjct: 243 DAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDFFYTDK-GEIFLNEL 301

Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           N  PG T  S++P +    G ++ +L+  +VE A
Sbjct: 302 NTMPGFTQWSMYPLLWDNMGITYPDLIERLVELA 335


>gi|187777544|ref|ZP_02994017.1| hypothetical protein CLOSPO_01135 [Clostridium sporogenes ATCC
           15579]
 gi|187774472|gb|EDU38274.1| hypothetical protein CLOSPO_01135 [Clostridium sporogenes ATCC
           15579]
          Length = 300

 Score =  306 bits (784), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 96/297 (32%), Positives = 157/297 (52%), Gaps = 9/297 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGGIS+EREVSL+SG+     LE    ++  I +D+   ++      D AF  LHG
Sbjct: 3   IGVIMGGISTEREVSLNSGREVIKYLELLEHEIIPIIIDKKEDVMEKAKGIDFAFLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI---LVNRFT 117
            FGEDG VQ++L+ L+IPY+  G L SA+ MDK  +K+++    +     +    V    
Sbjct: 63  EFGEDGTVQSVLQTLDIPYSGCGPLTSAICMDKDMTKKILKYANINTADWVNVSSVENID 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            ++   I  P  +KP  GGSS+   ++K  + I   +  +    +  +++IE Y  G E+
Sbjct: 123 YEAIEKIGYPVFVKPNSGGSSVATNLVKNKEGIKEAVELAL--KYDKEVMIENYTKGEEI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC ++    L V  I  P ++F+ Y  KY+   S  V+  ++  +++K+V+ +A    + 
Sbjct: 181 TCCMLNGKMLPVLAIR-PHAEFFDYTAKYADGGSDEVV-IELEENLHKKVEEMALACWKE 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           + C    R D +        + LE+N  PGMT  S+FP+ A   G SF ELL  +V+
Sbjct: 239 LKCEVYVRVDMIVKE--GVPYVLELNTLPGMTKNSLFPKSANAVGISFAELLDLIVK 293


>gi|307329821|ref|ZP_07608976.1| D-alanine/D-alanine ligase [Streptomyces violaceusniger Tu 4113]
 gi|306884550|gb|EFN15581.1| D-alanine/D-alanine ligase [Streptomyces violaceusniger Tu 4113]
          Length = 390

 Score =  306 bits (784), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 97/363 (26%), Positives = 156/363 (42%), Gaps = 71/363 (19%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +AV+ GG SSE  +S+ +  A   A++   + V  I +       L   +P         
Sbjct: 24  VAVVFGGRSSEHAISVVTAGAVLRAIDREKYDVLPIGITADGRWALTADEPERMGIAGRE 83

Query: 52  -----------------------------------------DLAFNVLHGNFGEDGLVQA 70
                                                    D+ F +LHG +GEDG +Q 
Sbjct: 84  LPSVERLAESGEGSVVLPVDPGNREVVYSEPGSVPKALGDVDVVFPMLHGPYGEDGTLQG 143

Query: 71  ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV------------NRFTM 118
           +LEL  +PY  +G+LASA+ MDK   K+V  S G+PV P  ++             R  +
Sbjct: 144 LLELSGVPYVGAGVLASAVGMDKEYMKRVFVSFGLPVGPYEVIRPREWQQEPSAARRRIV 203

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           +       P  +KP + GSS+GI  ++    +  D     +  H  ++++E  + G E+ 
Sbjct: 204 EFAAEHGWPLFVKPARAGSSIGITKVEDPADL--DEAIEEARRHDPKVIVEALLRGREIE 261

Query: 179 CGVMGDA-----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           CGV+        SL      V    FY +E KY   ++  ++PA +  +  + VQ LA  
Sbjct: 262 CGVLEYEDGPRASLPAEIPPVSSHAFYDFEAKY-IDSAAGIVPAPLTEEQTRRVQELAVA 320

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           A  A  C G+ R+DF       +    EIN  PG TP+S++P M   +G S+ EL+  ++
Sbjct: 321 AFDAASCEGLVRADFFLLDS-GEFVINEINTMPGFTPISMYPRMWQESGVSYPELVDRLL 379

Query: 294 EDA 296
           + A
Sbjct: 380 QAA 382


>gi|293365895|ref|ZP_06612598.1| D-alanine--D-alanine ligase [Streptococcus oralis ATCC 35037]
 gi|291315573|gb|EFE56023.1| D-alanine--D-alanine ligase [Streptococcus oralis ATCC 35037]
          Length = 372

 Score =  306 bits (784), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 97/334 (29%), Positives = 162/334 (48%), Gaps = 41/334 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQ------------------------- 35
           + +L GG S+EREVS+ S ++   A+    F V                           
Sbjct: 30  IILLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDFIKTQEFSQTPGQEDRL 89

Query: 36  -----IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
                ID D+ +     + +  + F VLHG  GEDG VQ  LE+L++PY    IL+S+L+
Sbjct: 90  MTNDTIDWDKKIAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLA 149

Query: 91  MDKMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLISPPYVIKPLKGGSSLGIIVI 144
           MDK+ +K+V+ S G+   P + +           + +  ++ P   KP   GSS+GI   
Sbjct: 150 MDKITTKRVLESAGIAQVPYVAIVEGDDVTSKIAEVEEKLTYPVFTKPSNMGSSVGISKS 209

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202
           +  + +   L    ++ +  ++L+EQ V+  E+  G++G+  +  T     V    FY Y
Sbjct: 210 ENQEELRQAL--ELAFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDY 267

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
           + KY     T  +PAKI  D+   +++ A +A +AIG  G+SR DF +     ++F  E+
Sbjct: 268 DAKYIDNKITMDIPAKISDDVVAVMRQNAEIAFRAIGGLGLSRCDFFYTDK-GEIFLNEL 326

Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           N  PG T  S++P +    G S+ EL+  +V+ A
Sbjct: 327 NTMPGFTQWSMYPLLWDNMGISYPELIEHLVDLA 360


>gi|212704379|ref|ZP_03312507.1| hypothetical protein DESPIG_02434 [Desulfovibrio piger ATCC 29098]
 gi|212672204|gb|EEB32687.1| hypothetical protein DESPIG_02434 [Desulfovibrio piger ATCC 29098]
          Length = 304

 Score =  306 bits (784), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 103/296 (34%), Positives = 159/296 (53%), Gaps = 5/296 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLA-HLKPDLAFNVLH 59
           + ++ GG SSEREVSL+  +    AL   G  V+  D+  +   +L    + D A   LH
Sbjct: 3   ILLIAGGWSSEREVSLTGARGMQEALLKRGHAVTFFDLLENFDELLETARQHDFALINLH 62

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN-RFTM 118
           G+ GEDGLVQA+LE  + PY  SG   S L+++K  +KQ+    G+P      +  R   
Sbjct: 63  GSPGEDGLVQAMLEKADCPYQGSGPSGSFLALNKAAAKQIFRMAGLPTADWEFLPVRPAE 122

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
             +  +  P  +K   GGSSL +      Q +  D +    +  G+ +LIE  + G E+T
Sbjct: 123 GWEPRLPWPLFVKTTTGGSSLRLGRATNRQEL--DAIMDEIFAAGEGVLIEPQLPGKEIT 180

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           CG++G+ ++    I     D++ YE KY++  +  + PA +   +  EVQRLA  AH+A+
Sbjct: 181 CGILGEEAMPPILIEPVAGDYFDYESKYATGGARELCPAPVSPAVTAEVQRLALAAHKAL 240

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           G +G SR+DF+  P    +  LE+N  PGMTP S+ P+ AA  G  F +LL  ++E
Sbjct: 241 GLKGYSRADFILGP-DDSLHLLEVNTLPGMTPTSLVPQEAAQLGMDFGQLLEKLIE 295


>gi|326940323|gb|AEA16219.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 311

 Score =  306 bits (784), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 88/303 (29%), Positives = 162/303 (53%), Gaps = 9/303 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGG+SSE++VS+ +G    + L+   +++  I ++  + L+      D A   LHG
Sbjct: 10  IGVIMGGVSSEKQVSIMTGNEMIAHLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 69

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117
            +GEDG VQ  LE L IPY+ S +L+S++ MDK  SK+++   GV     I + +     
Sbjct: 70  KYGEDGTVQGTLESLGIPYSGSNMLSSSICMDKNISKKILRYEGVETPDWIELTKMEDLN 129

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
           +D    +  P V+KP  GGSS+G+ ++     +    +  + +    +++IE+Y+ G E+
Sbjct: 130 LDELDKLGFPLVVKPNSGGSSVGVKIVYNKNELIS--MLETVFEWDSEVVIEKYIKGDEI 187

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC ++    L +  I    ++F+ Y  KY   ++   +  ++P +I + V + +   ++A
Sbjct: 188 TCSILDGKQLPIVSIR-HAAEFFDYNAKYDDTSTVEEV-IELPAEINERVNKASLACYKA 245

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           + C   +R D +        + +EIN  PGMT  S+ P+ A  AG S+ +LL  ++E + 
Sbjct: 246 LKCSVYARVDMMV--KDGIPYVMEINTLPGMTQSSLLPKSAEAAGISYSKLLDMIIETSL 303

Query: 298 CLR 300
            +R
Sbjct: 304 KVR 306


>gi|218897568|ref|YP_002445979.1| D-alanine--D-alanine ligase [Bacillus cereus G9842]
 gi|228901168|ref|ZP_04065370.1| D-alanine--D-alanine ligase [Bacillus thuringiensis IBL 4222]
 gi|218542332|gb|ACK94726.1| D-alanine--D-alanine ligase [Bacillus cereus G9842]
 gi|228858457|gb|EEN02915.1| D-alanine--D-alanine ligase [Bacillus thuringiensis IBL 4222]
          Length = 304

 Score =  306 bits (784), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 88/303 (29%), Positives = 162/303 (53%), Gaps = 9/303 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGG+SSE++VS+ +G    + L+   +++  I ++  + L+      D A   LHG
Sbjct: 3   IGVIMGGVSSEKQVSIMTGNEMIAHLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117
            +GEDG VQ  LE L IPY+ S +L+S++ MDK  SK+++   GV     I + +     
Sbjct: 63  KYGEDGTVQGTLESLGIPYSGSNMLSSSICMDKNISKKILRYEGVETPDWIELTKMEDLK 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
           +D    +  P V+KP  GGSS+G+ ++     +    +  + +    +++IE+Y+ G E+
Sbjct: 123 LDELDKLGFPLVVKPNSGGSSVGVKIVYNKNELIS--MLETVFEWDSEVVIEKYIKGDEI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC ++    L +  I    ++F+ Y  KY   ++   +  ++P +I + V + +   ++A
Sbjct: 181 TCSILDGKQLPIVSIR-HAAEFFDYNAKYDDTSTVEEV-IELPAEINERVNKASLACYKA 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           + C   +R D +        + +EIN  PGMT  S+ P+ A  AG S+ +LL  ++E + 
Sbjct: 239 LKCSVYARVDMMV--KDGIPYVMEINTLPGMTQSSLLPKSAEAAGISYSKLLDMIIETSL 296

Query: 298 CLR 300
            +R
Sbjct: 297 KVR 299


>gi|304437324|ref|ZP_07397283.1| UDP-N-acetylmuramate--L-alanine ligase [Selenomonas sp. oral taxon
           149 str. 67H29BP]
 gi|304369580|gb|EFM23246.1| UDP-N-acetylmuramate--L-alanine ligase [Selenomonas sp. oral taxon
           149 str. 67H29BP]
          Length = 785

 Score =  306 bits (784), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 111/311 (35%), Positives = 177/311 (56%), Gaps = 15/311 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-SVGLVLAHLKPDLAFNVLH 59
           + V+MGG SSE EVS  SG A   AL   G+    ++++  +    +  L P + FN LH
Sbjct: 479 IVVVMGGPSSEAEVSRRSGAAILRALCAKGYPAVGMELNPATFAEEIQALHPAIVFNALH 538

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--SILVNRFT 117
           G +GEDG++Q  L++L IPYT SG+ A+AL+MDK+ +K+V+++  +P     S   +  T
Sbjct: 539 GKYGEDGILQGTLDMLGIPYTGSGVRAAALTMDKIMAKRVLAAEDIPTPRCMSFYASERT 598

Query: 118 MDSQHLI----SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
            D+   I    S P V+K  + GSS+G+ ++ +D+ +   L   +++++GD++LIE++++
Sbjct: 599 ADTPREIRTAFSLPLVVKAPEQGSSIGVYIVTRDEELSPAL--DAAFSYGDEVLIEEFIE 656

Query: 174 GIELTCGVMGD----ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           G ELT  V G       + V EI    S  Y Y+ KY+   STH++PA +      EV++
Sbjct: 657 GRELTVAVWGTPAAAEVMPVIEIR-SVSGRYDYDSKYTPGASTHIVPAPLSDACRSEVEQ 715

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           LA  A+ A GC G++R D L    +R  + +E+N  PGMT  S+ P+ A   G  F EL 
Sbjct: 716 LARRAYAACGCSGLARVDLLLSAENR-PYVIELNAVPGMTETSLVPDAARALGIEFPELC 774

Query: 290 LWMVEDASCLR 300
             ++  A   R
Sbjct: 775 ERILALAGYRR 785


>gi|75764291|ref|ZP_00743831.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|74488221|gb|EAO51897.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
          Length = 311

 Score =  306 bits (784), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 88/303 (29%), Positives = 162/303 (53%), Gaps = 9/303 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGG+SSE++VS+ +G    + L+   +++  I ++  + L+      D A   LHG
Sbjct: 10  IGVIMGGVSSEKQVSIMTGNEMIAHLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 69

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117
            +GEDG VQ  LE L IPY+ S +L+S++ MDK  SK+++   GV     I + +     
Sbjct: 70  KYGEDGTVQGTLESLGIPYSGSNMLSSSICMDKNISKKILRYEGVETPDWIELTKMEDLK 129

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
           +D    +  P V+KP  GGSS+G+ ++     +    +  + +    +++IE+Y+ G E+
Sbjct: 130 LDELDKLGFPLVVKPNSGGSSVGVKIVYNKNELIS--MLETVFEWDSEVVIEKYIKGDEI 187

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC ++    L +  I    ++F+ Y  KY   ++   +  ++P +I + V + +   ++A
Sbjct: 188 TCSILDGKQLPIVSIR-HAAEFFDYNAKYDDTSTVEEV-IELPAEINERVNKASLACYKA 245

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           + C   +R D +        + +EIN  PGMT  S+ P+ A  AG S+ +LL  ++E + 
Sbjct: 246 LKCSVYARVDMMV--KDGIPYVMEINTLPGMTQSSLLPKSAEAAGISYSKLLDMIIETSL 303

Query: 298 CLR 300
            +R
Sbjct: 304 KVR 306


>gi|332072839|gb|EGI83320.1| D-alanine--D-alanine ligase family protein [Streptococcus
           pneumoniae GA17545]
          Length = 347

 Score =  305 bits (783), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 99/334 (29%), Positives = 160/334 (47%), Gaps = 41/334 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQ------------------------- 35
           + +L GG S+EREVS+ S +    A+    F V                           
Sbjct: 5   IILLYGGRSAEREVSVLSAENVMRAVNYDRFTVKTFFISQSGDFIKTQEFSQTPGQEDRL 64

Query: 36  -----IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
                ID D+ V     + +  + F VLHG  GEDG VQ  LE+L++PY    IL+S+L+
Sbjct: 65  MTNATIDWDKQVVPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLA 124

Query: 91  MDKMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
           MDK+ +K+V+ S G+   P +       V     + +  ++ P   KP   GSS+GI   
Sbjct: 125 MDKITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLAYPVFTKPSNMGSSVGISKS 184

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202
           +  + +   L    ++ +  ++L+EQ V+  E+  G++G+  +  T     V    FY Y
Sbjct: 185 ENQEELRQALKL--AFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDY 242

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
           + KY     T  +PAKI  D+   +++ A  A +AIG  G+SR DF +     ++F  E+
Sbjct: 243 DAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDFFYTDK-GEIFLNEL 301

Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           N  PG T  S++P +    G S+ EL+  +V+ A
Sbjct: 302 NTMPGFTQWSMYPLLWDNMGISYPELIERLVDLA 335


>gi|270292368|ref|ZP_06198579.1| D-alanine--D-alanine ligase [Streptococcus sp. M143]
 gi|270278347|gb|EFA24193.1| D-alanine--D-alanine ligase [Streptococcus sp. M143]
          Length = 347

 Score =  305 bits (783), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 98/334 (29%), Positives = 161/334 (48%), Gaps = 41/334 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQ------------------------- 35
           + +L GG S+EREVS+ S ++   A+    F V                           
Sbjct: 5   IILLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDFIKTQEFSQTPGQEDRL 64

Query: 36  -----IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
                ID D+ +     + +  + F VLHG  GEDG VQ  LE+L++PY    IL+S+L+
Sbjct: 65  MTNATIDWDKKIAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLA 124

Query: 91  MDKMRSKQVVSSCGVPVCPSILVNRFTM------DSQHLISPPYVIKPLKGGSSLGIIVI 144
           MDK+ +K+V+ S G+   P + +           + +  ++ P   KP   GSS+GI   
Sbjct: 125 MDKITTKRVLESAGIAQVPYVAIVEGDDVTAKITEVEEKLTYPVFTKPSNMGSSVGISKS 184

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202
           +  + +   L    ++ +  ++L+EQ V+  E+  G++G+  +  T     V    FY Y
Sbjct: 185 ENQEELRQAL--ELAFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDY 242

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
           + KY     T  +PAKI  D+   ++R A  A +AIG  G+SR DF +     ++F  E+
Sbjct: 243 DAKYIDNKITMDIPAKISDDVVAVMRRNAETAFRAIGGLGLSRCDFFYTDK-GEIFLNEL 301

Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           N  PG T  S++P +    G S+ EL+  +V+ A
Sbjct: 302 NTMPGFTQWSMYPLLWDNMGISYPELIERLVDLA 335


>gi|89099476|ref|ZP_01172352.1| D-alanylalanine synthetase [Bacillus sp. NRRL B-14911]
 gi|89085862|gb|EAR64987.1| D-alanylalanine synthetase [Bacillus sp. NRRL B-14911]
          Length = 357

 Score =  305 bits (783), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 90/342 (26%), Positives = 153/342 (44%), Gaps = 49/342 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           + +L GG S+E +VS+ +  A   AL+   F +  + +      V               
Sbjct: 5   LGLLYGGKSAEHKVSMQTALAVIKALDLEKFDIYPVYITEEGEWVKGPMLEAPAESVKQL 64

Query: 46  --------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
                                     D+ F +LHG  GEDG VQ +LELL +PY  +G+L
Sbjct: 65  EFSQGEAMSPAALAPAMFKSAEESSFDVIFPLLHGPNGEDGTVQGMLELLNLPYVGNGVL 124

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGG 136
           AS+  MDK+  K + +  G+P    +   R              +  +  P  +KP   G
Sbjct: 125 ASSAGMDKVIMKNIFAQAGLPQVNYVWFVRSEWQKAGETAYEKVEEELGYPCFVKPANLG 184

Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD--VTEIAV 194
           SS+GI      + +     ++  ++   ++++E+ V   E+  GV+G+   +  V    V
Sbjct: 185 SSVGISKCTNREELAAAFEEAFQFDR--KIIVEEGVTAREIELGVLGNDEPECSVAGEIV 242

Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
           PK DFY Y+ KY   ++  ++PA+I  + Y  +  ++  A +A+ C G+ R+DF      
Sbjct: 243 PKKDFYDYKAKYEDGDTAMIIPAEITEEEYSTLNEMSIRAFKALDCSGLVRADFFLT-RD 301

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            KV   E+N  PG TP S+FP +  + G  + +L+  +V  A
Sbjct: 302 GKVMINEVNTMPGFTPFSMFPLLWKHTGVEYPQLIERLVNLA 343


>gi|169343210|ref|ZP_02864225.1| D-alanine--D-alanine ligase [Clostridium perfringens C str.
           JGS1495]
 gi|169298669|gb|EDS80748.1| D-alanine--D-alanine ligase [Clostridium perfringens C str.
           JGS1495]
          Length = 295

 Score =  305 bits (783), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 95/298 (31%), Positives = 162/298 (54%), Gaps = 9/298 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGGISSERE+S+ SG +   AL+   ++   I ++    L+      D A   LHG
Sbjct: 3   VGVIMGGISSEREISIQSGNSVVHALDKDKYEAIPIVLNEKEDLIEKVKGIDFALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL---VNRFT 117
            FGEDG VQ++L+ L IP++  G L+SA+ MDK  +K++++   V     ++   V+   
Sbjct: 63  KFGEDGTVQSVLKTLGIPFSGCGPLSSAICMDKDMTKRILAFGNVRTARWVMVSSVDEID 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            +    +  P  IKP  GGSS+   +++  +++   +L++    +  +++IE+Y+ G E+
Sbjct: 123 YEKIENLGYPVFIKPNNGGSSVATTLVESKEAVEDAVLEAL--KYDTEVMIEEYIKGDEI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC ++    L V  I  PK  F+    KY    +   +  K+  D++KEV+++A   ++ 
Sbjct: 181 TCPIIDGKMLPVLAIK-PKGKFFDITSKYEDGGADEFI-VKLNEDLHKEVEKMALETYKL 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           + C   +R D L        + LE+N  PGMT  S+FP+ AA    SF ELL  ++E+
Sbjct: 239 LKCDVYARVDMLV--KDNIPYVLEVNTLPGMTKNSLFPKSAARINMSFEELLDTIIEN 294


>gi|303255992|ref|ZP_07342020.1| D-alanyl-alanine synthetase A [Streptococcus pneumoniae BS455]
 gi|302597051|gb|EFL64169.1| D-alanyl-alanine synthetase A [Streptococcus pneumoniae BS455]
          Length = 347

 Score =  305 bits (783), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 99/334 (29%), Positives = 161/334 (48%), Gaps = 41/334 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKV--------------------------- 33
           + +L GG S+EREVS+ S ++   A+    F V                           
Sbjct: 5   IILLYGGRSAEREVSVLSAESVMRAVNYNRFTVKTFFISQSGDFIKTQEFSQTPGQEDRL 64

Query: 34  ---SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
                ID D+ V     + +  + F VLHG  GEDG VQ  LE+L++PY    IL+S+L+
Sbjct: 65  MTNETIDWDKKVAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLA 124

Query: 91  MDKMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
           MDK+ +K+V+ S G+   P +       V     + +  ++ P   KP   GSS+GI   
Sbjct: 125 MDKITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLAYPVFTKPSNMGSSVGISKS 184

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202
           +  + +   L    ++ +  ++L+EQ V+  E+  G++G+  +  T     V    FY Y
Sbjct: 185 ENQEELRQAL--ELAFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDY 242

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
           + KY     T  +PAKI  D+   +++ A  A +AIG  G+SR DF +     ++F  E+
Sbjct: 243 DAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDFFYTDK-GEIFLNEL 301

Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           N  PG T  S++P +    G S+ EL+  +V+ A
Sbjct: 302 NTMPGFTQWSMYPLLWDNMGISYPELIERLVDLA 335


>gi|193214070|ref|YP_001995269.1| D-alanine/D-alanine ligase [Chloroherpeton thalassium ATCC 35110]
 gi|229463741|sp|B3QU24|DDL_CHLT3 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|193087547|gb|ACF12822.1| D-alanine/D-alanine ligase [Chloroherpeton thalassium ATCC 35110]
          Length = 366

 Score =  305 bits (783), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 95/351 (27%), Positives = 166/351 (47%), Gaps = 57/351 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           +A+L GG SSE E+S+ S ++ A+AL+   +K+  I + ++   + A             
Sbjct: 6   VALLFGGRSSEHEISVISARSIANALDKTKYKIQPIYITKAGKWLGAEASRKILAMDFES 65

Query: 50  ---------------------------------KPDLAFNVLHGNFGEDGLVQAILELLE 76
                                            K D+AF VLHG +GEDG VQ +LE+ +
Sbjct: 66  AIKSPTKKEIHLIEKEIVLLCQNSQFRFDFRTAKIDVAFPVLHGPYGEDGTVQGLLEMFD 125

Query: 77  IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD---------SQHLISPP 127
           + Y  SG+LASA++MDK  +K      G+ V   +   R   +         ++  +  P
Sbjct: 126 VAYVGSGVLASAITMDKAVAKICFEHAGLQVGEYLAFLRREFEENRGSVVARAEKKLRYP 185

Query: 128 YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL 187
             +KP   GSS+GI        +   +  + +++   + LIE+ ++  E+   V+G+   
Sbjct: 186 MFVKPANMGSSVGISKAHNRNELIEAIELALAYDR--KFLIEKAINAREMEVAVLGNDEP 243

Query: 188 --DVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
                   VP ++FY Y+ KY   +S  ++PA+I      +++  A  A  A  C G++R
Sbjct: 244 IASAVGEVVPCNEFYDYDAKYVKGSSEVIIPAQISEAFAGKLKAAALNAFVAADCEGMAR 303

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            DFL +  + +++  EIN  PG T +S++P++ A  G S+ EL+  ++E A
Sbjct: 304 VDFLVEKETNEIYINEINSIPGFTSISMYPKLFAQVGISYTELINRLIELA 354


>gi|295106875|emb|CBL04418.1| D-alanine--D-alanine ligase [Gordonibacter pamelaeae 7-10-1-b]
          Length = 310

 Score =  305 bits (783), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 105/304 (34%), Positives = 158/304 (51%), Gaps = 13/304 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59
           +A+L GG S EREVSL S  A   ALE   ++V +ID         L     +  F  LH
Sbjct: 8   IALLCGGASGEREVSLLSAAAVEEALEK-RYEVIKIDTGVEGWAHTLLDSSVEGVFICLH 66

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT-- 117
           G  GE+G +Q   E + +PYT  G+L+SA++MDK  +K +V S  +P    I V R    
Sbjct: 67  GGAGENGSIQGFCESVGLPYTGPGVLSSAIAMDKFVAKLLVESFRIPTPGYIRVLRGEEC 126

Query: 118 --MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175
              D +  +    V+KP   GS+LG+ ++     +       ++      +L+EQ++ G 
Sbjct: 127 NIEDIRTKLGGKLVVKPSTEGSALGVSIVDNGDDL--ACAIDTALELAPSVLVEQFISGR 184

Query: 176 ELTCGVMGDA---SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
           ELT  V+G      L   EI +P ++FY YE KY    + H+ PA +     ++ + +A 
Sbjct: 185 ELTVAVLGGEKPRVLPPIEI-IPANEFYDYEAKYEQDMAQHICPANLTEAELRQCEEMAL 243

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
            AH A+GC G+SR+D + D  +R  + LE N  PGMT  S+ P+ A   G +F EL   +
Sbjct: 244 GAHDALGCYGVSRTDCILDERNRLWY-LETNTIPGMTGTSLLPDAAKAVGITFDELCWNI 302

Query: 293 VEDA 296
           +EDA
Sbjct: 303 MEDA 306


>gi|239906669|ref|YP_002953410.1| D-alanine--D-alanine ligase [Desulfovibrio magneticus RS-1]
 gi|259645166|sp|C4XRH9|DDL_DESMR RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|239796535|dbj|BAH75524.1| D-alanine--D-alanine ligase [Desulfovibrio magneticus RS-1]
          Length = 304

 Score =  305 bits (783), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 104/296 (35%), Positives = 154/296 (52%), Gaps = 6/296 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK-PDLAFNVLH 59
           + ++ GG SSER VSLS       AL   G +V   D+       +   K  D  F  LH
Sbjct: 3   ILLVAGGWSSERAVSLSGAVQIEKALTSLGHEVVPYDLSHDFPGFVRRAKACDFVFLSLH 62

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G  GEDGL QA+L+   +PY  SG   S L+++K  SKQ+     +P      V R    
Sbjct: 63  GAPGEDGLPQALLDAAGVPYQGSGPAGSFLALNKAASKQLFLEACLPTPRWTFVPRDAGT 122

Query: 120 SQHL-ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           S       P+ +KP  GGSS+ + ++++ + +P  L +  +  HGD  LIE+ + G ELT
Sbjct: 123 SARPDFPLPWFVKPNLGGSSIHMTLVRRAEELPAALEKVFA--HGDDALIEEGLSGPELT 180

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           C V+GD +L    I     +F+ Y  KY    +  + PA +   + +E+ RL+  AH+ +
Sbjct: 181 CAVLGDEALPPILIRPKAGEFFDYASKYEPDAADEICPAPVEPAVTEELSRLSLAAHRVL 240

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           G  G SR+DF+  P    +  LE+N  PGMTP S+ P  AA AG SF +L+  ++E
Sbjct: 241 GLCGYSRADFILAPEG--LRLLEVNTLPGMTPTSLLPRAAATAGLSFADLIARLIE 294


>gi|329936757|ref|ZP_08286464.1| D-alanine-D-alanine ligase [Streptomyces griseoaurantiacus M045]
 gi|329303987|gb|EGG47870.1| D-alanine-D-alanine ligase [Streptomyces griseoaurantiacus M045]
          Length = 385

 Score =  305 bits (783), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 104/363 (28%), Positives = 161/363 (44%), Gaps = 71/363 (19%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +AV+ GG SSE  +S+ +  A  +A++   + V  I + R     L   +P         
Sbjct: 19  VAVVFGGRSSEHGISVVTAGAVLNAIDRTRYDVLPIGITREGRWALTADEPARMAIVDRR 78

Query: 52  -----------------------------------------DLAFNVLHGNFGEDGLVQA 70
                                                    D+ F VLHG +GEDG +Q 
Sbjct: 79  PPDVEELAEAAEGGVVLPVDPANREVVYSEPGSVPKALGEVDVVFPVLHGPYGEDGTLQG 138

Query: 71  ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM------------ 118
           +LEL  +PY  SG+LASA+  DK   K+V +S G+ V P +++                 
Sbjct: 139 LLELSGVPYVGSGVLASAVGQDKDYMKRVFTSFGLKVGPYVVIRPREWERDRSAARKRIV 198

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           D       P  +KP + GSS+GI  +  D    LD     +  H  ++L+E  + G E+ 
Sbjct: 199 DFAGEHGWPLFVKPARAGSSIGITKV--DGLAGLDEAIEEARRHDPKILVEAELRGREIE 256

Query: 179 CGVM----GDASLDVTEIAVPKSD-FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           CGV+    G  +    EI  P +  +Y +E KY   ++  ++PA +  +   EV+RLA  
Sbjct: 257 CGVLEFEEGPRASVPAEIPPPDTHAYYDFEAKY-IDSTPGLVPAPLTAEETAEVRRLAVE 315

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           A +A  C G+ R+DF       +    EIN  PG TP+S+FP+M    G S+ EL+  ++
Sbjct: 316 AFEAASCEGLVRADFFLTE-EGEFVINEINTMPGFTPISMFPQMWQATGVSYGELVDRLI 374

Query: 294 EDA 296
           E A
Sbjct: 375 ESA 377


>gi|148993757|ref|ZP_01823184.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae SP9-BS68]
 gi|6634579|emb|CAB64475.1| D-ala,D-ala ligase [Streptococcus pneumoniae]
 gi|6634584|emb|CAB64479.1| D-ala,D-ala ligase [Streptococcus pneumoniae]
 gi|147927713|gb|EDK78737.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae SP9-BS68]
 gi|332200230|gb|EGJ14303.1| D-alanine--D-alanine ligase family protein [Streptococcus
           pneumoniae GA47368]
          Length = 347

 Score =  305 bits (783), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 99/334 (29%), Positives = 162/334 (48%), Gaps = 41/334 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKV--------------------------- 33
           + +L GG S+EREVS+ S ++   A++   F V                           
Sbjct: 5   IILLYGGRSAEREVSVLSAESVMRAVDYDRFTVKTFFISQSGDFIKTQEFSHAPGQEDRL 64

Query: 34  ---SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
                ID D+ V     + +  + F VLHG  GEDG VQ  LE+L++PY    IL+S+L+
Sbjct: 65  MTNETIDWDKKVAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLA 124

Query: 91  MDKMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
           MDK+ +K+V+ S G+   P +       V     + +  ++ P   KP   GSS+GI   
Sbjct: 125 MDKITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLAYPVFTKPSNMGSSVGISKS 184

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202
           +  + +   L    ++ +  ++L+EQ V+  E+  G++G+  +  T     V    FY Y
Sbjct: 185 ENQEELRQALKL--AFRYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDY 242

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
           + KY     T  +PAKI  D+   +++ A  A +AIG  G+SR DF +     ++F  E+
Sbjct: 243 DAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDFFYTDK-GEIFLNEL 301

Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           N  PG T  S++P +    G S+ EL+  +V+ A
Sbjct: 302 NTMPGFTQWSMYPLLWDNMGISYPELIERLVDLA 335


>gi|325568401|ref|ZP_08144768.1| D-alanine-D-alanine ligase [Enterococcus casseliflavus ATCC 12755]
 gi|325158170|gb|EGC70323.1| D-alanine-D-alanine ligase [Enterococcus casseliflavus ATCC 12755]
          Length = 364

 Score =  305 bits (783), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 84/335 (25%), Positives = 150/335 (44%), Gaps = 44/335 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV------LAHLKPD-- 52
           + +L GG S+E EVSL S  +  +A+    ++V  + + +    +       A   PD  
Sbjct: 3   IILLYGGRSAEHEVSLLSAFSVVNAVYYNYYQVQLVMITKEGRWLKGPLLSEAPTSPDTL 62

Query: 53  ----------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
                                 + F +LHG  GEDG +Q  LE + +PY  +G+L SA  
Sbjct: 63  ALTNEETKGEEISPGAIYEEDAIVFPLLHGPNGEDGTIQGFLETIGMPYVGAGVLTSACG 122

Query: 91  MDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSLGI 141
           MDK+ +K ++ + G+P  P + V +              +  +  P  +KP   GSS+GI
Sbjct: 123 MDKIMTKYILQAAGIPQVPYVPVLKNAWKENPKKIFDQCEGSLLYPMFVKPANMGSSVGI 182

Query: 142 IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA--VPKSDF 199
              +  + +   L +  ++ +  + ++EQ ++  E+   V+G+  +  T     V    F
Sbjct: 183 SKAENREELQNALQE--AYRYDTRAIVEQGIEAREIEVAVLGNEDVRTTMPGEIVKDVAF 240

Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
           Y Y  KY        +PA+IP +   + Q  A  A+  +G  G+SR DF       ++F 
Sbjct: 241 YDYNSKYIDNRIEMQIPAQIPEETQAKAQEFAKKAYTMLGGSGLSRCDFFLTNK-NELFL 299

Query: 260 LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            E+N  PG T  S++P +    G  + +L+  +++
Sbjct: 300 NELNTMPGFTEFSMYPLLWEKTGLPYGDLIEELIQ 334


>gi|149011467|ref|ZP_01832714.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae SP19-BS75]
 gi|182684613|ref|YP_001836360.1| D-alanylalanine synthetase [Streptococcus pneumoniae CGSP14]
 gi|303258600|ref|ZP_07344580.1| D-alanyl-alanine synthetase A [Streptococcus pneumoniae SP-BS293]
 gi|303262687|ref|ZP_07348627.1| D-alanyl-alanine synthetase A [Streptococcus pneumoniae SP14-BS292]
 gi|303263627|ref|ZP_07349549.1| D-alanyl-alanine synthetase A [Streptococcus pneumoniae BS397]
 gi|303266388|ref|ZP_07352277.1| D-alanyl-alanine synthetase A [Streptococcus pneumoniae BS457]
 gi|303268261|ref|ZP_07354059.1| D-alanyl-alanine synthetase A [Streptococcus pneumoniae BS458]
 gi|229486022|sp|B2IRS6|DDL_STRPS RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|147764457|gb|EDK71388.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae SP19-BS75]
 gi|182629947|gb|ACB90895.1| D-alanylalanine synthetase [Streptococcus pneumoniae CGSP14]
 gi|301802373|emb|CBW35127.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae INV200]
 gi|302636243|gb|EFL66738.1| D-alanyl-alanine synthetase A [Streptococcus pneumoniae SP14-BS292]
 gi|302640101|gb|EFL70556.1| D-alanyl-alanine synthetase A [Streptococcus pneumoniae SP-BS293]
 gi|302642212|gb|EFL72561.1| D-alanyl-alanine synthetase A [Streptococcus pneumoniae BS458]
 gi|302644088|gb|EFL74346.1| D-alanyl-alanine synthetase A [Streptococcus pneumoniae BS457]
 gi|302646665|gb|EFL76890.1| D-alanyl-alanine synthetase A [Streptococcus pneumoniae BS397]
 gi|332201096|gb|EGJ15167.1| D-alanine--D-alanine ligase family protein [Streptococcus
           pneumoniae GA47901]
          Length = 347

 Score =  305 bits (782), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 99/334 (29%), Positives = 162/334 (48%), Gaps = 41/334 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKV--------------------------- 33
           + +L GG S+EREVS+ S ++   A++   F V                           
Sbjct: 5   IILLYGGRSAEREVSVLSAESVMRAVDYDRFTVKTFFISQSGDFIKTQEFSHDPGQEDRL 64

Query: 34  ---SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
                ID D+ V     + +  + F VLHG  GEDG VQ  LE+L++PY    IL+S+L+
Sbjct: 65  MTNETIDWDKKVAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLA 124

Query: 91  MDKMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
           MDK+ +K+V+ S G+   P +       V     + +  ++ P   KP   GSS+GI   
Sbjct: 125 MDKITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLAYPVFTKPSNMGSSVGISKS 184

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202
           +  + +   L    ++ +  ++L+EQ V+  E+  G++G+  +  T     V    FY Y
Sbjct: 185 ENQEELRQAL--ELAFRYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDY 242

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
           + KY     T  +PAKI  D+   +++ A  A +AIG  G+SR DF +     ++F  E+
Sbjct: 243 DAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDFFYTDK-GEIFLNEL 301

Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           N  PG T  S++P +    G S+ EL+  +V+ A
Sbjct: 302 NTMPGFTQWSMYPLLWDNMGISYPELIERLVDLA 335


>gi|257867059|ref|ZP_05646712.1| D-alanine:D-alanine ligase [Enterococcus casseliflavus EC30]
 gi|257873394|ref|ZP_05653047.1| D-alanine:D-alanine ligase [Enterococcus casseliflavus EC10]
 gi|257801115|gb|EEV30045.1| D-alanine:D-alanine ligase [Enterococcus casseliflavus EC30]
 gi|257807558|gb|EEV36380.1| D-alanine:D-alanine ligase [Enterococcus casseliflavus EC10]
          Length = 358

 Score =  305 bits (782), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 85/335 (25%), Positives = 150/335 (44%), Gaps = 44/335 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS------VGLVLAHLKPD-- 52
           + +L GG S+E EVSL S  +  +A+    ++V  + + +         L  A   PD  
Sbjct: 3   IILLYGGRSAEHEVSLLSAFSVVNAVYYNYYQVQLVMITKEGRWLKGPLLTEAPTSPDTL 62

Query: 53  ----------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
                                 + F +LHG  GEDG +Q  LE + +PY  +G+L SA  
Sbjct: 63  ALTNEETKGEEITPGAIYEEDAIVFPLLHGPNGEDGTIQGFLETIGMPYVGAGVLTSACG 122

Query: 91  MDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSLGI 141
           MDK+ +K ++ + G+P  P + V +              +  +  P  +KP   GSS+GI
Sbjct: 123 MDKIMTKYILQAAGIPQVPYVPVLKNAWKENPKKIFDQCEGSLLYPMFVKPANMGSSVGI 182

Query: 142 IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA--VPKSDF 199
              +  + +   L +  ++ +  + ++EQ ++  E+   V+G+  +  T     V    F
Sbjct: 183 SKAENREELQNALQE--AYRYDTRAIVEQGIEAREIEVAVLGNEDVRTTMPGEIVKDVAF 240

Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
           Y Y  KY        +PA+IP +   + Q  A  A+  +G  G+SR DF       ++F 
Sbjct: 241 YDYNSKYIDNRIEMQIPAQIPEETQAKAQEFAKKAYTMLGGSGLSRCDFFLTNK-NELFL 299

Query: 260 LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            E+N  PG T  S++P +    G  + +L+  +++
Sbjct: 300 NELNTMPGFTEFSMYPLLWEKTGLPYGDLIEELIQ 334


>gi|188579044|ref|YP_001915973.1| D-alanyl-alanine synthetase A [Xanthomonas oryzae pv. oryzae
           PXO99A]
 gi|188523496|gb|ACD61441.1| D-alanine--D-alanine ligase A [Xanthomonas oryzae pv. oryzae
           PXO99A]
          Length = 369

 Score =  305 bits (782), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 93/350 (26%), Positives = 161/350 (46%), Gaps = 57/350 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44
           + ++ GG S+E EVSL S      AL+   F+   I +D+                    
Sbjct: 6   VGLIFGGKSAEHEVSLQSAGNILDALDPQRFEPVLIGIDKQGQWHVNDPDSFLLHADDPA 65

Query: 45  -----------------------------VLAHLKPDLAFNVLHGNFGEDGLVQAILELL 75
                                         LA  + D+ F ++HG  GEDG +Q +L + 
Sbjct: 66  RIALHRSGRGVALLPGAQQQQLRPIQPEQALALAQIDVVFPIVHGTLGEDGSLQGLLRMA 125

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYV 129
            +P+  SG+L SA++MDK  +K+V+    + V P +  +R T     +      +  P  
Sbjct: 126 NLPFVGSGVLGSAVAMDKDMAKRVLRDARLAVAPFVCFDRHTAAHADVDTLIAQLGLPLF 185

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           +KP   GSS+G+  ++   +    L  + +++H  ++L+E  V G E+ C V+G+A    
Sbjct: 186 VKPANQGSSVGVSQVRTADAFAAALALALAYDH--KVLVEAAVAGREIECAVLGNAVPHA 243

Query: 190 TEI--AVPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRS 246
           +     V    FYSY  KY S   +  V+PA I     + +Q++A  A+QA+GC G++R 
Sbjct: 244 SVCGEVVVHDAFYSYATKYISEHGAEIVIPADIDAQTQQRIQQIAVQAYQALGCAGMARV 303

Query: 247 DFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           D        ++   E+N  PG T +S++P++   +G  +R L+  ++E A
Sbjct: 304 DVFL-CADGRIVINEVNTLPGFTRISMYPKLWQASGLDYRGLITRLIELA 352


>gi|149006741|ref|ZP_01830427.1| D-alanylalanine synthetase [Streptococcus pneumoniae SP18-BS74]
 gi|147761656|gb|EDK68620.1| D-alanylalanine synthetase [Streptococcus pneumoniae SP18-BS74]
          Length = 347

 Score =  305 bits (782), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 99/334 (29%), Positives = 161/334 (48%), Gaps = 41/334 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKV--------------------------- 33
           + +L GG S+EREVS+ S ++   A+    F V                           
Sbjct: 5   IILLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDFIKTQEFSHAPGQEDRL 64

Query: 34  ---SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
                ID D+ V     + +  + F VLHG  GEDG VQ  LE+L++PY    IL+S+L+
Sbjct: 65  MTNETIDWDKKVAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLA 124

Query: 91  MDKMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
           MDK+ +K+V+ S G+   P +       V     + +  ++ P   KP   GSS+GI   
Sbjct: 125 MDKITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLAYPVFTKPSNMGSSVGISKS 184

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202
           +  + +   L    ++ +  ++L+EQ V+  E+  G++G+  +  T     V    FY Y
Sbjct: 185 ENQEELRQALKL--AFRYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVTFYDY 242

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
           + KY     T  +PAKI  D+   +++ A  A +AIG  G+SR DF +     ++F  E+
Sbjct: 243 DAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDFFYTDK-GEIFLNEL 301

Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           N  PG T  S++P +    G S+ EL+  +V+ A
Sbjct: 302 NTMPGFTQWSMYPLLWDNMGISYPELIERLVDLA 335


>gi|283468533|emb|CAP19205.1| putative D-ala D-ala ligase [Prosthecobacter vanneervenii]
          Length = 307

 Score =  305 bits (782), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 103/304 (33%), Positives = 150/304 (49%), Gaps = 10/304 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +A+LMGG  SER+VSL + ++ A AL   G  V ++DV      V   +   +A N++HG
Sbjct: 9   IALLMGGPGSERKVSLKTAESVAEALRSKGATVVEVDVTGPDFEVPGDVF--IAMNLIHG 66

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG +Q+ILE   I YT +G+ +S ++ DK+ SK+   + GVP   S          
Sbjct: 67  TFGEDGQIQSILEQRGIRYTGAGVASSRIAFDKLLSKERFIAAGVPTPRSQTYP-LDGSQ 125

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P V+KP + GSS+G+ +      +   L  +  + H    LIE YV G ELT G
Sbjct: 126 PLAIGLPLVVKPPREGSSVGVHICHTQAELESALEDAKKFGHDT--LIEDYVAGKELTVG 183

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSS----LNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           V+GD  L +  I  P   FY    KY        + +  PA +  ++ K VQ  A  A Q
Sbjct: 184 VLGDQVLPIIHIE-PVEGFYDINNKYPWMGGTGKTNYNCPANLSPEVTKAVQDAALKAFQ 242

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           + G     R D +     +  F LE+N  PGMT  S+ P+ A   G  F +L   ++E +
Sbjct: 243 SCGTEVYGRVDVMLRDSDQAPFVLEVNTIPGMTSSSLLPKAAKAVGIEFPDLCAKIIELS 302

Query: 297 SCLR 300
              R
Sbjct: 303 LAAR 306


>gi|229463100|gb|ACQ66099.1| D-alanine:D-alanine ligase [Enterococcus faecium]
          Length = 358

 Score =  305 bits (782), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 88/342 (25%), Positives = 158/342 (46%), Gaps = 51/342 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV-------------LA 47
           + +L GG S+E EVS+ S  +  +A+    ++V  + + +    V             + 
Sbjct: 3   ITLLYGGRSAEHEVSILSAFSVLNAIYYNYYQVQLVFITKEGQWVKGPLLTEKPASKDVL 62

Query: 48  HLKPD------------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
           HL  D                        + F VLHG  GEDG +Q  LE L +PY  +G
Sbjct: 63  HLSWDPSGQTEEGFTGKVINPGEIKEEGAIVFPVLHGPNGEDGTIQGFLETLNMPYVGAG 122

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLK 134
           +L SA +MDK+ +K ++ + GVP  P + V +              +  +     +KP  
Sbjct: 123 VLTSACAMDKIMTKYILQAAGVPQVPYVPVLKNQWKENPKKVFDQCEGSLLYLMFVKPAN 182

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI-- 192
            GSS+GI   +  + +   L  ++++ +  + ++EQ ++  E+   V+G+  +  T    
Sbjct: 183 MGSSVGITKAENREELQNAL--ATAYQYDSRAIVEQGIEAREIEVAVLGNEDVRTTLPGE 240

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            V    FY YE KY +      +PA++P ++Y++ Q  A LA+  +G  G+SR DF    
Sbjct: 241 VVKDVAFYDYEAKYINNKIEMQIPAEVPEEVYQKAQEYAKLAYTMLGGSGLSRCDFFLTN 300

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
              ++F  E+N  PG T  S++P +    G  + +L+  +++
Sbjct: 301 K-NELFLNELNSMPGFTEFSMYPLLWENMGLKYGDLIEELIQ 341


>gi|7960291|gb|AAF71281.1|AF253562_5 ligase [Enterococcus faecalis]
          Length = 349

 Score =  305 bits (782), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 100/342 (29%), Positives = 158/342 (46%), Gaps = 52/342 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44
           +AV+ GG S+E EVSL S  A    +    F +  I + RS                   
Sbjct: 6   IAVIFGGNSTEYEVSLQSASAVFENINTNKFDIIPIGITRSGEWYHYTGEKEKILNNTWF 65

Query: 45  --------------------------VLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIP 78
                                         +K DL F VLHG  GE+G +Q I EL  IP
Sbjct: 66  EDSKNLCPVVVSQNRSVKGFLEIASDKYRIIKVDLVFPVLHGKNGENGTLQGIFELAGIP 125

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-----QHLISPPYVIKPL 133
                 L+SAL MDK R+ ++VS  G+ V  S+   RF  ++     +  ++ P  IKP+
Sbjct: 126 VVGCDTLSSALCMDKDRAHKLVSLAGISVPKSVTFKRFNEEAAMKEIEANLTYPLFIKPV 185

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
           + GSS GI  + + Q +  D     ++ H  ++++E+ ++G E+ C V+G   L V  + 
Sbjct: 186 RAGSSFGITKVIEKQEL--DAAIELAFEHDTEVIVEETINGFEVGCAVLGIDELIVGRVD 243

Query: 194 VPK--SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
             +  S F+ Y  KY+  +S   +PA+I  +  K +Q  A   ++A+GC G SR D  + 
Sbjct: 244 EIELSSGFFDYTEKYTLKSSKIYMPARIDAEAEKRIQEAAVTIYKALGCSGFSRVDMFYT 303

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           P   ++ + E+N  PG T  S +P M    G SF ++L  ++
Sbjct: 304 PS-GEIVFNEVNTIPGFTSHSRYPNMMKGIGLSFSQMLDKLI 344


>gi|254967029|gb|ACT97550.1| putative D-alanine-D-alanine ligase [uncultured organism]
          Length = 348

 Score =  305 bits (782), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 103/345 (29%), Positives = 163/345 (47%), Gaps = 50/345 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------------------- 38
           +AVL GG SSER+VSLS+G   A AL + G  V  +D                       
Sbjct: 3   IAVLCGGRSSERDVSLSTGIQVARALRETGHDVVLVDACVDFPLDCRPEEVFEKALPIEN 62

Query: 39  --------------DRSVGLVLAHL-----KPDLAFNVLHGNFGEDGLVQAILELLEIPY 79
                         DR+ G    ++       D+ FN LHG+ GE+G +QA+ +LL I Y
Sbjct: 63  HAIGAAAPCVERFFDRASGFFGKNVLEICKSADIVFNALHGDEGENGKLQAVFDLLNICY 122

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT----MDSQHLISPPYVIKPLKG 135
           T SG     L+M+K  SKQ+  + G+P   +++++        +    +  P V+KP   
Sbjct: 123 TGSGAQGCMLAMNKSLSKQLFRTHGIPTPEAVILSESDKCRAAELCEKLGLPCVVKPASL 182

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195
           GSS+G+ +++        L  + S  H   +++E+Y+ G E   G++G   L   EI +P
Sbjct: 183 GSSVGVSIVRTIDEFFTALDSAFSLEH--TVIVEKYIKGREFAVGIVGSRVLPAIEI-IP 239

Query: 196 KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255
           K  FY Y+ KY    +  + PA I  D  + +        + +G    +R+DF+ D    
Sbjct: 240 KHGFYDYKNKYQPGCTVEICPADIDSDTAERMAEATRKVFRVLGLGAYARADFMVDE--N 297

Query: 256 KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
            ++ LE N  PGMTPVS+ P+ AA     F  LL  +++++  LR
Sbjct: 298 GIYCLEANTLPGMTPVSLLPQEAAADKLDFPALLEAIIKESLLLR 342


>gi|307707461|ref|ZP_07643943.1| D-alanine--D-alanine ligase [Streptococcus mitis NCTC 12261]
 gi|307616413|gb|EFN95604.1| D-alanine--D-alanine ligase [Streptococcus mitis NCTC 12261]
          Length = 347

 Score =  305 bits (782), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 98/334 (29%), Positives = 161/334 (48%), Gaps = 41/334 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKV--------------------------- 33
           + +L GG S+EREVS+ S ++   A+    F V                           
Sbjct: 5   IILLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDFIKTQEFNQTPGQEDRL 64

Query: 34  ---SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
                ID D+ V     + +  + F VLHG  GEDG VQ  LE+L++PY    IL+S+L+
Sbjct: 65  MTNETIDWDKKVAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLA 124

Query: 91  MDKMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLISPPYVIKPLKGGSSLGIIVI 144
           MDK+ +K+V+ S G+   P + +           + +  ++ P   KP   GSS+GI   
Sbjct: 125 MDKITTKRVLESVGIAQVPYVAIVEGDDMTAKIAEVEEKLTYPVFTKPSNMGSSVGISKS 184

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202
           +  + +   L    ++ +  ++L+EQ V+  E+  G++G+  +  T     V    FY Y
Sbjct: 185 ENQEELRQALKL--AFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDY 242

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
           + KY     T  +PAKI  D+   +++ A  A +AIG  G+SR DF +     ++F  E+
Sbjct: 243 DAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDFFYTDK-GEIFLNEL 301

Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           N  PG T  S++P +    G S+ EL+  +V+ A
Sbjct: 302 NTMPGFTQWSMYPLLWDNMGISYPELIERLVDLA 335


>gi|238927323|ref|ZP_04659083.1| UDP-N-acetylmuramate--L-alanine ligase [Selenomonas flueggei ATCC
           43531]
 gi|238884605|gb|EEQ48243.1| UDP-N-acetylmuramate--L-alanine ligase [Selenomonas flueggei ATCC
           43531]
          Length = 785

 Score =  305 bits (782), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 108/311 (34%), Positives = 175/311 (56%), Gaps = 15/311 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-SVGLVLAHLKPDLAFNVLH 59
           + V+MGG SSE EVS  SG A   AL   G+    ++++  +    +  L P + FN LH
Sbjct: 479 IVVVMGGPSSEAEVSRRSGGAILQALLSKGYPAVGMELNPATFAEEIQALHPAIVFNALH 538

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT-- 117
           G +GEDG++Q  L++L IPYT SG+ A+AL+MDK+ +K+V+++ G+P    +        
Sbjct: 539 GKYGEDGILQGTLDMLGIPYTGSGVRAAALTMDKITAKRVLAAEGIPTPRCMSFYASERT 598

Query: 118 ----MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
                + +   S P V+K  + GSS+G+ ++  D+ +   L   +++ +GD++L+E+Y++
Sbjct: 599 EHTPQEIRAAFSLPLVVKAPEQGSSIGVYIVAADKELVPAL--DAAFTYGDEVLVEEYIE 656

Query: 174 GIELTCGVMG----DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           G EL+  V G       + + EI VP S  Y YE KY+    TH++PA I  +  +EV++
Sbjct: 657 GRELSVVVWGSPAAAEVMPIIEIEVP-SGRYDYESKYTPGGVTHLVPAPISAECRREVEQ 715

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           LA  A+ A GC G++R D L      + + +E+N  PGMT  S+ P+ A   G  F EL 
Sbjct: 716 LARRAYAACGCNGLARVDLLLSA-ENQPYVIELNAVPGMTETSLVPDAARAVGIDFPELC 774

Query: 290 LWMVEDASCLR 300
             ++  A   R
Sbjct: 775 EKILALAGYHR 785


>gi|226305903|ref|YP_002765863.1| D-alanine--D-alanine ligase [Rhodococcus erythropolis PR4]
 gi|259645171|sp|C0ZXN9|DDL_RHOE4 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|226185020|dbj|BAH33124.1| D-alanine--D-alanine ligase [Rhodococcus erythropolis PR4]
          Length = 368

 Score =  305 bits (782), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 101/360 (28%), Positives = 162/360 (45%), Gaps = 65/360 (18%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +AV+ GG S+E  VS  S  +  S L+   + V  I +      VL    P         
Sbjct: 8   VAVIFGGRSNEHSVSCVSAGSVLSNLDPDRYDVVPIGITVDGSWVLGSSDPSSLAISGRA 67

Query: 52  --------------------------------------DLAFNVLHGNFGEDGLVQAILE 73
                                                 D+ F VLHG +GEDG +Q +LE
Sbjct: 68  LPSVDKDGTSVVLSADPTREGEVISFDGSDAGAVLASVDVVFPVLHGAYGEDGTIQGLLE 127

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF----TMDSQHLISPPYV 129
           L  +PY   G+LASA  MDK  +K+++++ G+PV   +++       T + +  +  P  
Sbjct: 128 LAGVPYVGPGVLASAAGMDKEFTKKLLAAEGLPVGVQVVLRPGIATLTEEQKAELGLPVF 187

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM----GDA 185
           +KP +GGSS+GI  +       LD   + +  H  ++++E  + G E+ CGV+    GD 
Sbjct: 188 VKPARGGSSIGITRVSNWD--GLDGAIAHARLHDPKVIVEGAIIGREVECGVLEFPNGDV 245

Query: 186 SLDVT-EIAVPKSD-----FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
              V  EI +P +D     FY ++ KY        +PAK+   +  +++ LA  A +A+ 
Sbjct: 246 KASVVAEIRMPDADTDSDAFYDFDTKYLDDVCEFDIPAKLDESVSDQIRELAVRAFKALD 305

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
           C+G+SR DF            EIN  PG T +S++P+M    G  +R L+  +V+ A   
Sbjct: 306 CQGLSRVDFFVTADG--PVINEINTMPGFTSISMYPKMWNATGIDYRTLISTLVDTAIAR 363


>gi|160872919|ref|ZP_02063051.1| D-alanine--D-alanine ligase (D-alanylalanine
           synthetase)(D-Ala-D-Ala ligase) [Rickettsiella grylli]
 gi|159121718|gb|EDP47056.1| D-alanine--D-alanine ligase (D-alanylalanine
           synthetase)(D-Ala-D-Ala ligase) [Rickettsiella grylli]
          Length = 365

 Score =  305 bits (782), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 96/346 (27%), Positives = 164/346 (47%), Gaps = 49/346 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------------------- 40
           +AVL GG S+E E+SL S  A    L+   F +  I +D+                    
Sbjct: 11  VAVLYGGFSAEHEISLLSAAAVIKNLDQRKFSIIPIGIDKQGRCFVNQLQSLYSGDTILL 70

Query: 41  -----------SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
                      +  +V      D+ F VLHG  GEDG +Q +L+L++I Y  + +L SA+
Sbjct: 71  ETENAQSFSGLAELMVDKKGHYDVVFPVLHGALGEDGTIQGLLDLMDIAYIGADVLGSAV 130

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPLKGGSSLG 140
            MDK+ SK++  +  +PV P +  N               +  I  P  IKP+ GGSSLG
Sbjct: 131 GMDKVVSKRLACAAHIPVVPFLAFNSGHWLRNKSLYSQQIRQEIGYPLFIKPVNGGSSLG 190

Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV------TEIAV 194
           I  IKKD  +   +     + +  ++L+E+ ++  E+   V+ +               +
Sbjct: 191 ITKIKKDTDLENAIELV--FTYSTKVLVEKALEVREVEIAVLENQKWGAEPYVSQIGEII 248

Query: 195 PKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
           P+ +FYSYE KY     +  ++PA +     ++++RLA      + C G++R DF  +  
Sbjct: 249 PRHEFYSYEAKYLDEKGAQLIIPASLQNSQLQQIKRLAIELFNGLDCSGMARIDFFIEKR 308

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
           S+K+++ E+N  PG T +S++P +   +G ++  LL  ++E A   
Sbjct: 309 SQKIYFNELNTIPGFTKISMYPRLWEVSGIAYTSLLTHLIELALTR 354


>gi|289550300|ref|YP_003471204.1| D-alanine--D-alanine ligase [Staphylococcus lugdunensis HKU09-01]
 gi|315660240|ref|ZP_07913095.1| D-alanine-D-alanine ligase [Staphylococcus lugdunensis M23590]
 gi|289179832|gb|ADC87077.1| D-alanine--D-alanine ligase [Staphylococcus lugdunensis HKU09-01]
 gi|315494667|gb|EFU83007.1| D-alanine-D-alanine ligase [Staphylococcus lugdunensis M23590]
          Length = 356

 Score =  305 bits (782), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 85/339 (25%), Positives = 152/339 (44%), Gaps = 46/339 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGF----------------------------- 31
           + ++ GG S+E +VS  + +   +A++   +                             
Sbjct: 6   ICIIYGGKSAEHDVSKLTAQNVLNAIDKEKYLVDIIYITNDGLWKKKGNITATIESPEEL 65

Query: 32  ---KVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
               V   D+   +    A    D  F +LHG  GEDG +Q + E+L+IPY  +G+LA++
Sbjct: 66  TLTDVEPEDITLLLKQSSAGEAYDAVFPLLHGPNGEDGTIQGLFEVLDIPYVGNGVLAAS 125

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSL 139
            SMDK+  KQ+    G+P  P I   R   +          +  +  P  +KP   GSS+
Sbjct: 126 SSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYQGNIIKLVKDKLEYPVFVKPANLGSSV 185

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKS 197
           GI     +Q +   + ++  ++   +L+IEQ ++  E+   V+G+   + T     V   
Sbjct: 186 GISKCNDEQELKAGIAEAFQFDR--KLVIEQGINAREVEVAVLGNDYPETTWPGEVVKDV 243

Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
            FY Y+ KY        +PA++  ++   ++ +A  A +A  C G+ R+DF       ++
Sbjct: 244 AFYDYKSKYKDGKIRLQIPAELDQEVQLTLRNMALEAFKATDCSGLVRADFFVTE-DNQI 302

Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           F  E N  PG T  S++P +    G S+ +L+  ++E A
Sbjct: 303 FINETNAMPGFTAFSMYPSLWENMGLSYSDLITKLIELA 341


>gi|6634559|emb|CAB64459.1| D-ala,D-ala ligase [Streptococcus pneumoniae]
          Length = 347

 Score =  305 bits (782), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 99/334 (29%), Positives = 161/334 (48%), Gaps = 41/334 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKV--------------------------- 33
           + +L GG S+EREVS+ S ++   A+    F V                           
Sbjct: 5   IILLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDSIKTQEFSHAPGQEDRL 64

Query: 34  ---SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
                ID D+ V     + +  + F VLHG  GEDG VQ  LE+L++PY    IL+S+L+
Sbjct: 65  MTNETIDWDKKVAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLA 124

Query: 91  MDKMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
           MDK+ +K+V+ S G+   P +       V     + +  ++ P   KP   GSS+GI   
Sbjct: 125 MDKITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLAYPVFTKPSNMGSSVGISKS 184

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202
           +  + +   L    ++ +  ++L+EQ V+  E+  G++G+  +  T     V    FY Y
Sbjct: 185 ENQEELRQALKL--AFRYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDY 242

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
           + KY     T  +PAKI  D+   +++ A  A +AIG  G+SR DF +     ++F  E+
Sbjct: 243 DAKYIDNKVTMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDFFYTDK-GEIFLNEL 301

Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           N  PG T  S++P +    G S+ EL+  +V+ A
Sbjct: 302 NTMPGFTQWSMYPLLWDNMGISYPELIERLVDLA 335


>gi|309798670|ref|ZP_07692937.1| D-alanine--D-alanine ligase [Streptococcus infantis SK1302]
 gi|308117716|gb|EFO55125.1| D-alanine--D-alanine ligase [Streptococcus infantis SK1302]
          Length = 347

 Score =  305 bits (782), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 99/334 (29%), Positives = 161/334 (48%), Gaps = 41/334 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKV--------------------------- 33
           + +L GG S+EREVS+ S ++   A+    F V                           
Sbjct: 5   IILLYGGRSAEREVSVLSAESVMRAVNYDRFAVKTFFISQSGDFIKTQEFTQTPGQDERL 64

Query: 34  ---SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
                ID D+ +     + +  + F VLHG  GEDG VQ  LE+L++PY    IL+S+L+
Sbjct: 65  MTNETIDWDKKIAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLA 124

Query: 91  MDKMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLISPPYVIKPLKGGSSLGIIVI 144
           MDK+ +K+V+ S G+   P + +           + +  +S P   KP   GSS+GI   
Sbjct: 125 MDKITTKRVLESAGIAQVPYVAIVEGDDLASKIAEVEEKLSYPVFTKPSNMGSSVGISKS 184

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202
           +  + +   L    ++ +  ++L+EQ V+  E+  G++G+  +  T     V    FY Y
Sbjct: 185 ENKEELRQAL--ELAFKYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDY 242

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
           + KY     T  +PAKI  D+   +++ A  A +AIG  G+SR DF +     +VF  E+
Sbjct: 243 DAKYIDNKITMDIPAKISDDVIALMRKNAETAFRAIGGLGLSRCDFFYTDK-GEVFLNEL 301

Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           N  PG T  S++P +    G S+ EL+  +V+ A
Sbjct: 302 NTMPGFTQWSMYPLLWDNMGISYPELIERLVDLA 335


>gi|242278456|ref|YP_002990585.1| D-alanine/D-alanine ligase [Desulfovibrio salexigens DSM 2638]
 gi|259645165|sp|C6C0B2|DDL_DESAD RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|242121350|gb|ACS79046.1| D-alanine/D-alanine ligase [Desulfovibrio salexigens DSM 2638]
          Length = 302

 Score =  305 bits (781), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 100/301 (33%), Positives = 157/301 (52%), Gaps = 7/301 (2%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSV-GLVLAHLKPDLAFNVLHGN 61
           ++ GG S EREVSLS  K    AL + G  V  +D  +    ++L     D AF  LHG+
Sbjct: 5   LIAGGWSEEREVSLSGAKGIEQALLELGHDVEFVDPAKDFKNILLLAEHADFAFINLHGS 64

Query: 62  FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-DS 120
            GEDGL+QA+L  +  PY  +   +S L+++K  +K V    G+      LV        
Sbjct: 65  PGEDGLIQAMLNQVNCPYQGAEPESSFLTLNKAATKTVFDHHGILTPKWELVCAADGCKG 124

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              + PP  IKP  GGSSLG+   +  + +   +   + ++ GD  L+E+Y  GIE+TCG
Sbjct: 125 LQDLEPPVFIKPNSGGSSLGMTFARTAEELEKGI--ETVFSLGDSALVEEYTKGIEVTCG 182

Query: 181 VMGDASLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
           ++    + +  I  P + +F+ Y  KY+   +  + PA I   + +++Q++   AH+ +G
Sbjct: 183 ILDGEPMPLILINPPDNAEFFDYHSKYALDGAEEICPAPIDPVLTEQIQQITAKAHKLLG 242

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
               SR+DF+        + LE+N  PGMTP S+ P+ A  AGYSF EL+  ++E     
Sbjct: 243 LTDYSRADFIISE--GVPYLLEVNTLPGMTPTSLVPQAAKEAGYSFNELIAKLIELGQRK 300

Query: 300 R 300
           R
Sbjct: 301 R 301


>gi|15901506|ref|NP_346110.1| D-alanyl-alanine synthetase A [Streptococcus pneumoniae TIGR4]
 gi|111658549|ref|ZP_01409212.1| hypothetical protein SpneT_02000305 [Streptococcus pneumoniae
           TIGR4]
 gi|14973163|gb|AAK75750.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae TIGR4]
          Length = 347

 Score =  305 bits (781), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 99/334 (29%), Positives = 163/334 (48%), Gaps = 41/334 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKV--------------------------- 33
           + +L GG S+EREVS+ S ++   A++   F V                           
Sbjct: 5   IILLYGGRSAEREVSVLSAESVMRAVDYDRFTVKTFFISQSGDFIKTQEFSHAPGQEDRL 64

Query: 34  ---SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
                ID D+ V     + +  + F VLHG  GEDG VQ  LE+L++PY    IL+S+L+
Sbjct: 65  MTNETIDWDKKVAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLA 124

Query: 91  MDKMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
           MDK+ +K+V+ S G+   P +       V     + +  ++ P   KP   GSS+GI   
Sbjct: 125 MDKITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLAYPVFTKPSNMGSSVGISKS 184

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202
           +  + +   L    ++ +  ++L+EQ V+  E+  G++G+  +  T     V    FY Y
Sbjct: 185 ENQEELRQALKL--AFRYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDY 242

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
           + KY   N T  +PAKI  D+   +++ A  A +AIG  G+SR DF +     ++F  E+
Sbjct: 243 DAKYIDNNITMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDFFYTDK-GEIFLNEL 301

Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           N  PG T  S++P +    G S+ +L+  +V+ A
Sbjct: 302 NTMPGFTQWSMYPLLWDNMGISYPKLIERLVDLA 335


>gi|330465894|ref|YP_004403637.1| D-alanine/D-alanine ligase [Verrucosispora maris AB-18-032]
 gi|328808865|gb|AEB43037.1| D-alanine/D-alanine ligase [Verrucosispora maris AB-18-032]
          Length = 388

 Score =  305 bits (781), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 106/360 (29%), Positives = 173/360 (48%), Gaps = 62/360 (17%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLA------------- 47
           + VL GG S+E EVS +S    A AL   G++V  + V R   L L              
Sbjct: 20  IGVLFGGPSAEHEVSCASALGVARALVGGGYQVVALGVTRQGRLRLVPEETLAAHIDGTA 79

Query: 48  --------------------------------------HLKPDLAFNVLHGNFGEDGLVQ 69
                                                 H   D+ F VLHG +GEDG+VQ
Sbjct: 80  AARAIDDRLSVTGSAVELRAGERPGTALVTGAESPGEVHAVLDVVFPVLHGPYGEDGVVQ 139

Query: 70  AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN----RFTMDSQHL-- 123
            +LE L +PY   GILASA+ MDK+  K+ + + GVP+ P +  +    R T D + L  
Sbjct: 140 GLLESLGVPYVGCGILASAVGMDKVAMKRALRAEGVPITPHVWFDEHTYRTTEDVEKLVV 199

Query: 124 -ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            +  P  +KP + GSS+GI  + +D  +   +    +  H + +++EQ V G EL CGV+
Sbjct: 200 GLRRPLFVKPARMGSSIGISRVTEDDDLAAAV--EEALRHDNLVVVEQGVTGRELECGVL 257

Query: 183 GDASLDVTEIAVPK--SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           G    + + +   +    ++ Y+ KY       V+PA +P ++ + ++ L+  A  AIG 
Sbjct: 258 GGTRPEASTVGEVRVTGGWFDYQQKYFGDADPMVVPAVLPDEVTERIRDLSLRAFAAIGG 317

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
            G++R DFL+D  + +++  E+N  PG T  S++P++ A AG  +++++  +V  A   R
Sbjct: 318 WGLARVDFLYDESAGELYVNELNTMPGFTAHSMYPKVWAAAGVGYQQIVDRLVALAVERR 377


>gi|108805737|ref|YP_645674.1| D-alanine--D-alanine ligase [Rubrobacter xylanophilus DSM 9941]
 gi|108766980|gb|ABG05862.1| D-alanine--D-alanine ligase [Rubrobacter xylanophilus DSM 9941]
          Length = 351

 Score =  305 bits (781), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 101/340 (29%), Positives = 163/340 (47%), Gaps = 46/340 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           + V+ GG S E EVSL+S ++    L  AG +V  + + R    +               
Sbjct: 4   VMVVFGGRSGEHEVSLASARSVMEGLRKAGHEVVPVGITREGRWLAGEDPLRELEAAAGG 63

Query: 46  ----------LAHLKP-------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
                     LA  +P       D+ F VLHG +GEDG +Q +LEL +IPY  +G+LASA
Sbjct: 64  NAGSPSGPPALAAHRPPAELESVDVVFPVLHGPYGEDGTIQGLLELADIPYVGAGVLASA 123

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI---------SPPYVIKPLKGGSSL 139
           + MDK+  K+V +  G+P    + + R     +              P  +KP   GSS+
Sbjct: 124 VGMDKITMKKVFAHHGLPQVRWVELTRRRWQERRKELLREVEEELGFPCFVKPSNLGSSV 183

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPK 196
           GI    +   +   L  +++ +   ++++E  VD  E+   V+G+ + +V+   EI + K
Sbjct: 184 GISRAAEPGELAAALDAAAALDR--RIIVEAGVDAREVEVSVLGNEAPEVSVPGEILIRK 241

Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256
            DFY YE KYS        PA +P +   E++R+A  A +AI   G++R DF  +  + +
Sbjct: 242 GDFYDYEAKYSEGGMELEAPADLPQETAGEIRRIARTAFEAIDAAGMARVDFFLERRTGR 301

Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           V   EIN  PG T  S++  +   +G  +  LL  ++E A
Sbjct: 302 VLLNEINTIPGFTATSVYSRLWEASGLPYERLLERLIELA 341


>gi|28210407|ref|NP_781351.1| D-alanine--D-alanine ligase [Clostridium tetani E88]
 gi|39931117|sp|Q897P8|DDLA_CLOTE RecName: Full=D-alanine--D-alanine ligase A; AltName:
           Full=D-Ala-D-Ala ligase A; AltName: Full=D-alanylalanine
           synthetase A
 gi|28202844|gb|AAO35288.1| D-alanine--D-alanine ligase [Clostridium tetani E88]
          Length = 301

 Score =  305 bits (781), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 97/297 (32%), Positives = 170/297 (57%), Gaps = 9/297 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGG+S+E+E+S  +GK     L+ + +++  I ++    L+      + AF  LHG
Sbjct: 3   IGVVMGGVSTEKEISNLTGKYIIENLDKSKYEILPIPINTKFELIDKIKCLEFAFIALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF---T 117
           NFGEDG VQA+LE + +PY+ SG+LAS+L MDK  SK+++   G+     I++ +     
Sbjct: 63  NFGEDGKVQALLETMGVPYSGSGVLASSLCMDKNMSKKILQGEGIKTPRWIMLYKNEDID 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            +S   I  P V+KP  GGSS+GI ++KK+Q +   +    ++   +++LIE+Y+ G E+
Sbjct: 123 FESIKNIGYPLVVKPNSGGSSIGITIVKKEQELIKAI--EEAFKFDEEILIEEYIKGEEI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC ++    L +  I   K +F++Y+ KY    +     A + L++  +V++++    ++
Sbjct: 181 TCCMLDGKPLPILSIKT-KEEFFNYKAKYFEGVAEE-KVADLSLELKDQVEKISNKCWKS 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
              +   R D +      +V+ +EIN  PGMT  S+FP+ A   G +F ELL  ++E
Sbjct: 239 FKLKVYGRIDMII--KGNEVYVIEINTLPGMTKYSLFPKSAKAYGLNFSELLDKIIE 293


>gi|297171472|gb|ADI22472.1| D-alanine-D-alanine ligase and related ATP-grasp enzymes
           [uncultured gamma proteobacterium HF0500_07A21]
          Length = 363

 Score =  305 bits (781), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 93/344 (27%), Positives = 160/344 (46%), Gaps = 53/344 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------------------- 40
           + +L GG S+E EVS+ S ++  +A++   + V    +D+                    
Sbjct: 6   VVLLFGGRSAEHEVSVVSARSVYAAIDREQYDVVLAGIDQQGRWYFGGKDSESLSLSTFV 65

Query: 41  ------------------SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
                               G  L   + D+ F +LHG +GEDG VQ +LEL  + Y  +
Sbjct: 66  PDEQVPARLSTTGPYLVSEDGNYLPGSEFDVVFPLLHGPYGEDGTVQGLLELAGLAYVGA 125

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPL 133
           G+ ASA+ MDK+ ++ + ++ G+P     ++ R              +     P  +KP 
Sbjct: 126 GVAASAVGMDKVLARAIFTASGLPQTQYSVIMRSDWRRAQASVLERLEGEHDYPLFVKPA 185

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEI 192
             GSS+GI      Q +   L  +S   +  +L+IE+ V+   EL C V+G+     + +
Sbjct: 186 NLGSSVGISKAHDRQGLQAGLELAS--QYDTKLIIERSVENARELECAVLGNEYPKASGV 243

Query: 193 A--VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
              +P ++FY Y  KY    S  V+PA +     + ++ LA    +AI C G++R DF  
Sbjct: 244 GEIIPGAEFYDYTTKYIDDQSELVVPAVLEKSETESIRELAIRTFKAIDCSGLARVDFFM 303

Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            P    V   EIN  PG TP+S++P++ A AG ++ +L+  +++
Sbjct: 304 RP-DGSVLVNEINTMPGFTPISMYPKLWAAAGVAYGDLIDRLIQ 346


>gi|290969173|ref|ZP_06560698.1| D-ala D-ala ligase N-terminal domain protein [Megasphaera genomosp.
           type_1 str. 28L]
 gi|290780679|gb|EFD93282.1| D-ala D-ala ligase N-terminal domain protein [Megasphaera genomosp.
           type_1 str. 28L]
          Length = 313

 Score =  305 bits (781), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 97/303 (32%), Positives = 165/303 (54%), Gaps = 11/303 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS-VGLVLAHLKPDLAFNVLH 59
           +AV++GG S+E  +S  +G A A+AL++ G+K   +++  + +   L   K D+ FN LH
Sbjct: 10  IAVMVGGPSTEAAISRKTGAAVAAALQEKGYKPEIMELVPTMLARTLQEKKIDVVFNALH 69

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G +GEDG++Q   E+  IPYT  G++ASA+ M+K+ SK   +  G+P  P          
Sbjct: 70  GRYGEDGVLQGFCEMAGIPYTGPGVMASAVGMNKVMSKCAFAGAGIPTAPFAYYFAAQSP 129

Query: 120 S------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
           +      +   S P VIK    GSS+G +++++  ++P  + +  ++++ + ++ EQ++D
Sbjct: 130 AAIVAAIEREFSLPVVIKSAGQGSSIGTVIVREADALPEAVKE--AFSYSNSIIAEQFID 187

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           G E T  VM D +  V +I V  +  Y Y  KY+   + H+ PA +     +++Q LA  
Sbjct: 188 GDEFTVAVMDDMAFPVIQI-VSDTGKYDYYSKYTPGVAKHLCPAPLTETATRQMQDLALQ 246

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
                   G++R D + D   R  F LEIN  PGMT  S+ P+ A   G SF +L   ++
Sbjct: 247 VFHLCHASGVARVDMMTDAAGR-PFVLEINTVPGMTETSLVPDAARAMGMSFADLCEKIL 305

Query: 294 EDA 296
           ++A
Sbjct: 306 QEA 308


>gi|331698554|ref|YP_004334793.1| D-alanine--D-alanine ligase [Pseudonocardia dioxanivorans CB1190]
 gi|326953243|gb|AEA26940.1| D-alanine--D-alanine ligase [Pseudonocardia dioxanivorans CB1190]
          Length = 365

 Score =  305 bits (781), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 95/356 (26%), Positives = 155/356 (43%), Gaps = 60/356 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +AV+ GG SSE  +S  S  +  + L+   F V  + +      VL    P         
Sbjct: 8   VAVVFGGRSSEHTISCVSAGSVLAHLDRDRFDVVPVGITPDGAWVLGTDDPARLRIDGRT 67

Query: 52  -------------------------------------DLAFNVLHGNFGEDGLVQAILEL 74
                                                D+ F VLHG FGEDG +Q + E+
Sbjct: 68  LPVVDGTGAALALPGDPTRGGLVRLDRDRAGEVFSGVDVVFPVLHGPFGEDGTIQGLFEM 127

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF----TMDSQHLISPPYVI 130
             +PY  SG+LASA  MDK  +K+++++ G+ V   +++       T   Q  +  P  +
Sbjct: 128 AGLPYVGSGVLASAAGMDKEFTKKLLAAEGLAVGSLVVLRPGTQSLTAAQQERLGLPVFV 187

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV- 189
           KP + GSS+GI  +       LD   +++  H  ++L+E  + G E+ CGV+      V 
Sbjct: 188 KPARAGSSVGITRVTSWD--RLDEAVAAARVHDPKVLVEAAIVGREVECGVLEYPDGTVR 245

Query: 190 ------TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
                   +    ++FY ++ KY        +PAK+  D+ + V+  A  A +A+ C+G+
Sbjct: 246 ASLPAEIRLVSGSAEFYDFDAKYLDDACEFDIPAKLDDDVTERVRDQAVAAFRALDCQGL 305

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
           +R DF            E+N  PG TP+S++P M A  G  +  LL  +V+ A   
Sbjct: 306 ARVDFFV-GDDGAPVVNEVNTMPGFTPISMYPRMWAETGVDYPTLLATLVDTALAR 360


>gi|153955531|ref|YP_001396296.1| D-alanine--D-alanine ligase [Clostridium kluyveri DSM 555]
 gi|219855927|ref|YP_002473049.1| hypothetical protein CKR_2584 [Clostridium kluyveri NBRC 12016]
 gi|189083038|sp|A5N1C9|DDL_CLOK5 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|254767726|sp|B9E560|DDL_CLOK1 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|146348389|gb|EDK34925.1| Ddl [Clostridium kluyveri DSM 555]
 gi|219569651|dbj|BAH07635.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 297

 Score =  305 bits (781), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 88/297 (29%), Positives = 160/297 (53%), Gaps = 8/297 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + ++MGGISSEREVSL+SGK+  + ++   +++  I +D+   +       D AF  LHG
Sbjct: 3   VGIIMGGISSEREVSLNSGKSIINYMDKNKYEIVPIVIDKKNDVFEKVKDIDFAFIALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL---VNRFT 117
            FGEDG++Q++ + ++IPY+    L S + MDK  SK+++ S  +     I    +    
Sbjct: 63  KFGEDGIIQSVFQTMDIPYSGCSPLTSGICMDKDISKKLLYSANINTAEWICIKSIENID 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            D    +  P V+KP  GGSS+   +I+K + I        ++N+ ++++IE+Y++G E+
Sbjct: 123 YDYLEKMGYPVVVKPNSGGSSVATTIIEKSEDIEEAARL--AFNYDEEVMIEKYIEGDEI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC ++   +L +  I   K  F+ Y  KY+   S  ++  +    +  +++ ++    + 
Sbjct: 181 TCCILDGTALPILAIKPNKGSFFDYTSKYADGGSEEIV-VEFEKPLQSKIEEISLKCWEL 239

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             C+G  R D +     +  + LE+N  PG+T  S+FP+ A     SF ELL  +++
Sbjct: 240 FKCKGYVRVDMIL--KDKVPYVLELNTLPGLTKNSLFPKSANGVNISFTELLDKIIQ 294


>gi|225861499|ref|YP_002743008.1| D-alanyl-alanine synthetase A [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|254767744|sp|C1CST6|DDL_STRZT RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|225727438|gb|ACO23289.1| D-alanine--D-alanine ligase (D-alanylalanine
           synthetase)(D-Ala-D-Ala ligase) [Streptococcus
           pneumoniae Taiwan19F-14]
 gi|327389857|gb|EGE88202.1| D-alanine--D-alanine ligase family protein [Streptococcus
           pneumoniae GA04375]
          Length = 347

 Score =  305 bits (781), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 99/334 (29%), Positives = 161/334 (48%), Gaps = 41/334 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKV--------------------------- 33
           + +L GG S+EREVS+ S ++   A+    F V                           
Sbjct: 5   IILLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDFIKTQEFSHAPGQEDRL 64

Query: 34  ---SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
                ID D+ V     + +  + F VLHG  GEDG VQ  LE+L++PY    IL+S+L+
Sbjct: 65  MTNETIDWDKKVAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLA 124

Query: 91  MDKMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
           MDK+ +K+V+ S G+   P +       V     + +  ++ P   KP   GSS+GI   
Sbjct: 125 MDKITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLAYPVFTKPSNMGSSVGISKS 184

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202
           +  + +   L    ++ +  ++L+EQ V+  E+  G++G+  +  T     V    FY Y
Sbjct: 185 ENQEELRPAL--ELAFRYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDY 242

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
           + KY     T  +PAKI  D+   +++ A  A +AIG  G+SR DF +     ++F  E+
Sbjct: 243 DAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDFFYTDK-GEIFLNEL 301

Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           N  PG T  S++P +    G S+ EL+  +V+ A
Sbjct: 302 NTMPGFTQWSMYPLLWDNMGISYPELIERLVDLA 335


>gi|295100377|emb|CBK97922.1| D-alanine--D-alanine ligase [Faecalibacterium prausnitzii L2-6]
          Length = 366

 Score =  305 bits (781), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 93/349 (26%), Positives = 158/349 (45%), Gaps = 55/349 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44
           + VL GG+SSE EVS  S       L+   +++  I + +                    
Sbjct: 11  VVVLFGGMSSEHEVSRVSAGTFVDQLDRQRYELLTIGITKEGRWLYTEADSAQMADGSWE 70

Query: 45  --------------------------VLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIP 78
                                      +  +  D+   VLHG +GEDG VQ +LEL  IP
Sbjct: 71  ELPGNMPCVLSPDRADHGLILFTPAGQVEKVHVDVVIPVLHGLWGEDGTVQGLLELAGIP 130

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ---------HLISPPYV 129
           Y   G+LASA+ MDK  +  +  + G+P    +   R+ ++S            +  P  
Sbjct: 131 YVGCGVLASAVCMDKAVANAMFDASGIPHTKWLSATRWEIESDPDGVCDGVIAKLGWPIF 190

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           +KP   GSS+GI        +   +  + +  +  +++ E +VDG E+ C V+G      
Sbjct: 191 VKPANAGSSVGITKAHDRDELKAAIRLALA--NDRKVVFEAFVDGHEVECAVIGSDPAVS 248

Query: 190 TEIA--VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           T     +  ++FY+Y+ KY +  S  V+PA++P +   EV+  A +A+ A+GC G++R D
Sbjct: 249 TRPGEILAGAEFYTYDDKYKNGVSQVVIPARLPEEKLDEVKTYAAMAYTALGCEGLARCD 308

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           F  +  + +V   EIN  PG TP+S++P++  + G     L+  ++  A
Sbjct: 309 FFVEKDTGRVLINEINTLPGFTPISMYPKLMEHEGIPVPALIDRLIALA 357


>gi|256032535|pdb|3E5N|A Chain A, Crystal Strucutre Of D-Alanine-D-Alanine Ligase From
           Xanthomonas Oryzae Pv. Oryzae Kacc10331
          Length = 386

 Score =  305 bits (781), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 93/348 (26%), Positives = 163/348 (46%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44
           + ++ GG S+E EVSL S +    AL+   F+   I +D+                    
Sbjct: 25  VGLIFGGKSAEHEVSLQSARNILDALDPQRFEPVLIGIDKQGQWHVNDPDSFLLHADDPA 84

Query: 45  --------------------VLAHLKP-------DLAFNVLHGNFGEDGLVQAILELLEI 77
                                L  ++P       D+ F ++HG  GEDG +Q +L +  +
Sbjct: 85  RIALHRSGRGVALLPGAQQQQLRPIQPEQALAQIDVVFPIVHGTLGEDGSLQGLLRMANL 144

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIK 131
           P+  SG+L SA++MDK  +K+V+    + V P +  +R T     +      +  P  +K
Sbjct: 145 PFVGSGVLGSAVAMDKDMAKRVLRDARLAVAPFVCFDRHTAAHADVDTLIAQLGLPLFVK 204

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  ++   +    L  + +++H  ++L+E  V G E+ C V+G+A    + 
Sbjct: 205 PANQGSSVGVSQVRTADAFAAALALALAYDH--KVLVEAAVAGREIECAVLGNAVPHASV 262

Query: 192 I--AVPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               V    FYSY  KY S   +  V+PA I     + +Q++A  A+QA+GC G++R D 
Sbjct: 263 CGEVVVHDAFYSYATKYISEHGAEIVIPADIDAQTQQRIQQIAVQAYQALGCAGMARVDV 322

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                  ++   E+N  PG T +S++P++   +G  +R L+  ++E A
Sbjct: 323 FL-CADGRIVINEVNTLPGFTRISVYPKLWQASGLDYRGLITRLIELA 369


>gi|332138295|pdb|3RFC|A Chain A, Crystal Structure Of D-Alanine-D-Alanine Ligase A From
           Xanthomonas Oryzae Pathovar Oryzae With Adp
          Length = 384

 Score =  305 bits (781), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 93/348 (26%), Positives = 163/348 (46%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44
           + ++ GG S+E EVSL S +    AL+   F+   I +D+                    
Sbjct: 23  VGLIFGGKSAEHEVSLQSARNILDALDPQRFEPVLIGIDKQGQWHVNDPDSFLLHADDPA 82

Query: 45  --------------------VLAHLKP-------DLAFNVLHGNFGEDGLVQAILELLEI 77
                                L  ++P       D+ F ++HG  GEDG +Q +L +  +
Sbjct: 83  RIALHRSGRGVALLPGAQQQQLRPIQPEQALAQIDVVFPIVHGTLGEDGSLQGLLRMANL 142

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIK 131
           P+  SG+L SA++MDK  +K+V+    + V P +  +R T     +      +  P  +K
Sbjct: 143 PFVGSGVLGSAVAMDKDMAKRVLRDARLAVAPFVCFDRHTAAHADVDTLIAQLGLPLFVK 202

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  ++   +    L  + +++H  ++L+E  V G E+ C V+G+A    + 
Sbjct: 203 PANQGSSVGVSQVRTADAFAAALALALAYDH--KVLVEAAVAGREIECAVLGNAVPHASV 260

Query: 192 I--AVPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               V    FYSY  KY S   +  V+PA I     + +Q++A  A+QA+GC G++R D 
Sbjct: 261 CGEVVVHDAFYSYATKYISEHGAEIVIPADIDAQTQQRIQQIAVQAYQALGCAGMARVDV 320

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                  ++   E+N  PG T +S++P++   +G  +R L+  ++E A
Sbjct: 321 FL-CADGRIVINEVNTLPGFTRISVYPKLWQASGLDYRGLITRLIELA 367


>gi|148988718|ref|ZP_01820151.1| D-alanylalanine synthetase [Streptococcus pneumoniae SP6-BS73]
 gi|148997722|ref|ZP_01825286.1| D-alanylalanine synthetase [Streptococcus pneumoniae SP11-BS70]
 gi|149001955|ref|ZP_01826909.1| D-alanylalanine synthetase [Streptococcus pneumoniae SP14-BS69]
 gi|168575140|ref|ZP_02721103.1| D-alanine--D-alanine ligase (D-alanylalanine
           synthetase)(D-Ala-D-Ala ligase) [Streptococcus
           pneumoniae MLV-016]
 gi|194397559|ref|YP_002038285.1| D-alanyl-alanine synthetase A [Streptococcus pneumoniae G54]
 gi|237650677|ref|ZP_04524929.1| D-alanyl-alanine synthetase A [Streptococcus pneumoniae CCRI 1974]
 gi|237822435|ref|ZP_04598280.1| D-alanyl-alanine synthetase A [Streptococcus pneumoniae CCRI
           1974M2]
 gi|307068296|ref|YP_003877262.1| D-alanine-D-alanine ligase-like ATP-grasp enzyme [Streptococcus
           pneumoniae AP200]
 gi|226696391|sp|B5E721|DDL_STRP4 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|4009465|gb|AAC95435.1| D-Ala-D-Ala ligase [Streptococcus pneumoniae G54]
 gi|147756221|gb|EDK63263.1| D-alanylalanine synthetase [Streptococcus pneumoniae SP11-BS70]
 gi|147759764|gb|EDK66754.1| D-alanylalanine synthetase [Streptococcus pneumoniae SP14-BS69]
 gi|147925919|gb|EDK76994.1| D-alanylalanine synthetase [Streptococcus pneumoniae SP6-BS73]
 gi|183578923|gb|EDT99451.1| D-alanine--D-alanine ligase (D-alanylalanine
           synthetase)(D-Ala-D-Ala ligase) [Streptococcus
           pneumoniae MLV-016]
 gi|194357226|gb|ACF55674.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae G54]
 gi|301794652|emb|CBW37103.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae INV104]
 gi|306409833|gb|ADM85260.1| D-alanine-D-alanine ligase-like ATP-grasp enzyme [Streptococcus
           pneumoniae AP200]
 gi|332074006|gb|EGI84484.1| D-alanine--D-alanine ligase family protein [Streptococcus
           pneumoniae GA41301]
          Length = 347

 Score =  305 bits (781), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 99/334 (29%), Positives = 161/334 (48%), Gaps = 41/334 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKV--------------------------- 33
           + +L GG S+EREVS+ S ++   A+    F V                           
Sbjct: 5   IILLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDFIKTQEFSHAPGQEDRL 64

Query: 34  ---SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
                ID D+ V     + +  + F VLHG  GEDG VQ  LE+L++PY    IL+S+L+
Sbjct: 65  MTNETIDWDKKVAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLA 124

Query: 91  MDKMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
           MDK+ +K+V+ S G+   P +       V     + +  ++ P   KP   GSS+GI   
Sbjct: 125 MDKITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLAYPVFTKPSNMGSSVGISKS 184

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202
           +  + +   L    ++ +  ++L+EQ V+  E+  G++G+  +  T     V    FY Y
Sbjct: 185 ENQEELRQALKL--AFRYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDY 242

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
           + KY     T  +PAKI  D+   +++ A  A +AIG  G+SR DF +     ++F  E+
Sbjct: 243 DAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDFFYTDK-GEIFLNEL 301

Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           N  PG T  S++P +    G S+ EL+  +V+ A
Sbjct: 302 NTMPGFTQWSMYPLLWDNMGISYPELIERLVDLA 335


>gi|261340971|ref|ZP_05968829.1| D-alanine--D-alanine ligase A [Enterobacter cancerogenus ATCC
           35316]
 gi|288316835|gb|EFC55773.1| D-alanine--D-alanine ligase A [Enterobacter cancerogenus ATCC
           35316]
          Length = 366

 Score =  305 bits (781), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 90/348 (25%), Positives = 161/348 (46%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           + ++ GG S+E EVSL S K    A++   F V  + +D+     +              
Sbjct: 6   VGIVFGGKSAEHEVSLQSAKNIVDAIDKNRFDVVLLGIDKQGQWHVNDASQYLLNADDPA 65

Query: 47  -----------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEI 77
                                        A  + D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  HIALNPSEISVATVPGVVQGQFINAGNAQALAQIDVVFPIVHGTLGEDGSLQGMLRMANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVIK 131
           P+  S +L SA  MDK  +K+++   G+ + P + + R   +S         +  P  +K
Sbjct: 126 PFVGSDVLGSAACMDKDMTKRLLRDAGLNIAPFVTLTRANRESYTFAQLSAQLGLPLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  +  +      +  +  ++H  ++++EQ + G E+ C V+G+     + 
Sbjct: 186 PANQGSSVGVSKVSSETQYTEAVRLAFEFDH--KVVVEQGIKGREIECAVLGNDFPQAST 243

Query: 192 I--AVPKSDFYSYELKYSSL-NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               V  SDFYSY+ KY     +  V+PA +   I  +++ +A  A+QA+GC G++R D 
Sbjct: 244 CGEVVLNSDFYSYDTKYIDDQGAQVVVPADLDPAINDKIRAIAVEAYQALGCSGMARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              P    V   EIN  PG T +S++P++   +G S+ +L+  ++E A
Sbjct: 304 FLTP-ENDVVINEINTLPGFTNISMYPKLWQASGLSYPDLITRLLELA 350


>gi|257877137|ref|ZP_05656790.1| D-alanine:D-alanine ligase [Enterococcus casseliflavus EC20]
 gi|257811303|gb|EEV40123.1| D-alanine:D-alanine ligase [Enterococcus casseliflavus EC20]
          Length = 362

 Score =  305 bits (781), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 85/335 (25%), Positives = 150/335 (44%), Gaps = 44/335 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS------VGLVLAHLKPD-- 52
           + +L GG S+E EVSL S  +  +A+    ++V  + + +         L  A   PD  
Sbjct: 3   IILLYGGRSAEHEVSLLSAFSVVNAVYYNYYQVQLVMITKEGRWLKGPLLTEAPTSPDTL 62

Query: 53  ----------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
                                 + F +LHG  GEDG +Q  LE + +PY  +G+L SA  
Sbjct: 63  ALTNEETKGEEISPGAIYEEDAIVFPLLHGPNGEDGTIQGFLETIGMPYVGAGVLTSACG 122

Query: 91  MDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSLGI 141
           MDK+ +K ++ + G+P  P + V +              +  +  P  +KP   GSS+GI
Sbjct: 123 MDKIMTKYILQAAGIPQVPYVPVLKNAWKENPKKIFDQCEGSLLYPMFVKPANMGSSVGI 182

Query: 142 IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA--VPKSDF 199
              +  + +   L +  ++ +  + ++EQ ++  E+   V+G+  +  T     V    F
Sbjct: 183 SKAENREELQNALQE--AYRYDTRAIVEQGIEAREIEVAVLGNEDVRTTMPGEIVKDVAF 240

Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
           Y Y  KY        +PA+IP +   + Q  A  A+  +G  G+SR DF       ++F 
Sbjct: 241 YDYNSKYIDNRIEMQIPAQIPEETQAKAQEFAKKAYTMLGGSGLSRCDFFLTNK-NELFL 299

Query: 260 LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            E+N  PG T  S++P +    G  + +L+  +++
Sbjct: 300 NELNTMPGFTEFSMYPLLWEKTGLPYGDLIEELIQ 334


>gi|227501785|ref|ZP_03931834.1| D-alanyl-alanine synthetase A [Corynebacterium accolens ATCC 49725]
 gi|227077810|gb|EEI15773.1| D-alanyl-alanine synthetase A [Corynebacterium accolens ATCC 49725]
          Length = 355

 Score =  304 bits (780), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 96/351 (27%), Positives = 160/351 (45%), Gaps = 56/351 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           +AVL GG S+E  VS  S  A    L+   F+V  I + R                    
Sbjct: 7   VAVLYGGRSTEHSVSCVSAGAIMKHLDPEKFQVVPIGITREGTWTPGDTEGLEIVDGVMP 66

Query: 49  -----------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPY 79
                                         + D+ F +LHG +GEDG +Q + EL  IPY
Sbjct: 67  EVKRGTELALSADPTRKGEIRAISDGSLYAQVDVIFPILHGPYGEDGTMQGLFELSGIPY 126

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFTMDSQHLISPPYVIKPLKGG 136
              G+LAS++ MDK  +K+++S+ G+PV P ++V      T++ +  +  P  +KP +GG
Sbjct: 127 VGPGVLASSVGMDKEFTKKILSAAGLPVAPEVIVQGRTELTVEEKERLGLPVFVKPARGG 186

Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM--GDASLDVTEIAV 194
           SS+G+  +      P  +  +      D++L+E  + G E+  GV+   D  L  +  A+
Sbjct: 187 SSIGVSKVSDWADFPEAVRIAL--EDDDKILVEPEIVGREVEVGVLQYPDGELIASVPAL 244

Query: 195 ------PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                     FY +E KY     T  +PA  P ++  +++ +A  A +A+ C G+SR DF
Sbjct: 245 LKGIDDSDEGFYGFETKYLDNVVTAQIPAPFPEELTAQLRDMAIRAFKALNCTGLSRVDF 304

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
                   ++  E+N  PG TP+S++P++ A +G  +  LL  ++  A   
Sbjct: 305 FVTEEG--LYINEVNTLPGFTPISMYPQVLAASGVDYPSLLEVLIASAEAR 353


>gi|306829917|ref|ZP_07463104.1| D-alanine-D-alanine ligase [Streptococcus mitis ATCC 6249]
 gi|304427928|gb|EFM31021.1| D-alanine-D-alanine ligase [Streptococcus mitis ATCC 6249]
          Length = 372

 Score =  304 bits (780), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 97/334 (29%), Positives = 160/334 (47%), Gaps = 41/334 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQ------------------------- 35
           + +L GG S+EREVS+ S ++   A+    F V                           
Sbjct: 30  IILLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDFIKTQEFSQTPGQEDRL 89

Query: 36  -----IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
                ID D+ +     + +  + F VLHG  GEDG VQ  LE+L++PY    IL+S+L+
Sbjct: 90  MTNATIDWDKKIAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLA 149

Query: 91  MDKMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
           MDK+ +K+V+ S G+   P +       V     + +  ++ P   KP   GSS+GI   
Sbjct: 150 MDKITTKRVLESVGIAQVPYVAIVEGDDVTAKIAEVEEKLTYPVFTKPSNMGSSVGISKS 209

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202
           +  + +   L    ++ +  ++L+EQ V+  E+  G++G+  +  T     V    FY Y
Sbjct: 210 ENHEELRQAL--ELAFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDY 267

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
           + KY     T  +PAKI  D+   ++  A  A +AIG  G+SR DF +     ++F  E+
Sbjct: 268 DAKYIDNKITMDIPAKISDDVVAVMRHNAETAFRAIGGLGLSRCDFFYTDK-GEIFLNEL 326

Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           N  PG T  S++P +    G S+ +L+  +V+ A
Sbjct: 327 NTMPGFTQWSMYPLLWDNMGISYPDLIERLVDLA 360


>gi|255306374|ref|ZP_05350545.1| D-alanine--D-alanine ligase [Clostridium difficile ATCC 43255]
          Length = 299

 Score =  304 bits (780), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 94/298 (31%), Positives = 144/298 (48%), Gaps = 9/298 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59
           +AV+MGGISSEREVSL+SGK   + L+   ++V ++ +D +           D A   LH
Sbjct: 3   IAVIMGGISSEREVSLNSGKEIYNNLDKNKYEVVKVIIDDKKDIFTKIPEDIDFAILALH 62

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL---VNRF 116
           G FGEDG +Q+ILE ++IPY+  G L S + MDK  +K+++    +P  P +L   V+  
Sbjct: 63  GKFGEDGCIQSILETMDIPYSGCGPLCSGMCMDKNITKKMLRDSNLPTAPWVLVKSVDEI 122

Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
             D    I  P  IKP  GGSS+    I     +   + +       + ++IE+Y+ G E
Sbjct: 123 DYDEIDNIGYPVFIKPNSGGSSVATFFIHSKDEVEKAVRKGL--EVDEFVMIEKYIPGGE 180

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
            T  ++         I    S F+ YE KYS           +  ++ K V  ++    +
Sbjct: 181 YTSFILNGEVFPTISIK-SDSGFFDYEAKYSVEKGAKEEVVYLDEELQKRVNEISETCWK 239

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
              C+   R D +        + LE+N  PGMT  S+ P  AA  G  + ELL  ++E
Sbjct: 240 IFNCKAYVRVDMIISE--GIPYVLELNTLPGMTQTSLIPRSAAARGIKYSELLDKLIE 295


>gi|307707045|ref|ZP_07643842.1| D-alanine--D-alanine ligase [Streptococcus mitis SK321]
 gi|307617571|gb|EFN96741.1| D-alanine--D-alanine ligase [Streptococcus mitis SK321]
          Length = 347

 Score =  304 bits (780), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 100/334 (29%), Positives = 160/334 (47%), Gaps = 41/334 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKV--------------------------- 33
           + +L GG S+EREVS+ S ++   A+    F V                           
Sbjct: 5   IILLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDFIKTQEFSQTPGQEDRL 64

Query: 34  ---SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
                ID D+ V     + +  + F VLHG  GEDG VQ  LE+L++PY    IL+S+L+
Sbjct: 65  MTNETIDWDKQVAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLA 124

Query: 91  MDKMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
           MDK+ +K+V+ S G+   P +       V     + +  ++ P   KP   GSS+GI   
Sbjct: 125 MDKITTKRVLESVGIAQVPYVAIVEGDDVTSKIAEVEEKLTYPVFTKPSNMGSSVGISKS 184

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202
           +  + +   L    ++ +  ++L+EQ V+  E+  G++G+     T     V    FY Y
Sbjct: 185 ENQEELRQALKL--AFQYDSRVLVEQGVNAREIEVGLLGNYDAKSTLPGEVVKDVAFYDY 242

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
           + KY     T  +PAKI  D+   +++ A  A +AIG  G+SR DF +     +VF  E+
Sbjct: 243 DAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDFFYTDK-GEVFLNEL 301

Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           N  PG T  S++P +    G S+ EL+  +V+ A
Sbjct: 302 NTMPGFTQWSMYPLLWDNMGISYPELIERLVDLA 335


>gi|148984109|ref|ZP_01817404.1| D-alanylalanine synthetase [Streptococcus pneumoniae SP3-BS71]
 gi|147923398|gb|EDK74511.1| D-alanylalanine synthetase [Streptococcus pneumoniae SP3-BS71]
 gi|301800482|emb|CBW33121.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae OXC141]
          Length = 347

 Score =  304 bits (780), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 99/334 (29%), Positives = 161/334 (48%), Gaps = 41/334 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKV--------------------------- 33
           + +L GG S+EREVS+ S ++   A+    F V                           
Sbjct: 5   IILLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDFIKTQEFSHAPGQEDRL 64

Query: 34  ---SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
                ID D+ V     + +  + F VLHG  GEDG VQ  LE+L++PY    IL+S+L+
Sbjct: 65  MTNETIDWDKKVAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLA 124

Query: 91  MDKMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
           MDK+ +K+V+ S G+   P +       V     + +  ++ P   KP   GSS+GI   
Sbjct: 125 MDKITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLAYPVFTKPSNMGSSVGISRS 184

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202
           +  + +   L    ++ +  ++L+EQ V+  E+  G++G+  +  T     V    FY Y
Sbjct: 185 ENQEELRQALKL--AFRYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDY 242

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
           + KY     T  +PAKI  D+   +++ A  A +AIG  G+SR DF +     ++F  E+
Sbjct: 243 DAKYIDNKVTMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDFFYTDK-GEIFLNEL 301

Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           N  PG T  S++P +    G S+ EL+  +V+ A
Sbjct: 302 NTMPGFTQWSMYPLLWDNMGISYPELIERLVDLA 335


>gi|182435714|ref|YP_001823433.1| D-alanyl-alanine synthetase A [Streptomyces griseus subsp. griseus
           NBRC 13350]
 gi|326776339|ref|ZP_08235604.1| D-alanine--D-alanine ligase [Streptomyces cf. griseus XylebKG-1]
 gi|229486019|sp|B1VYZ5|DDL_STRGG RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|178464230|dbj|BAG18750.1| putative D-alanine-D-alanine ligase [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|326656672|gb|EGE41518.1| D-alanine--D-alanine ligase [Streptomyces cf. griseus XylebKG-1]
          Length = 391

 Score =  304 bits (780), Expect = 9e-81,   Method: Composition-based stats.
 Identities = 103/363 (28%), Positives = 156/363 (42%), Gaps = 71/363 (19%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +AV+ GG SSE  +S+ +  A   A++   + V  I +       L   +P         
Sbjct: 25  VAVVFGGRSSEHGISVVTAGAVMRAIDRTTYDVLPIGITTDGRWALTADEPERMAITDRK 84

Query: 52  -----------------------------------------DLAFNVLHGNFGEDGLVQA 70
                                                    D+ F VLHG +GEDG +Q 
Sbjct: 85  VPDVDRLTESAEGSVVLSVDPGSREVVYTEPGSVPKALGEVDVVFPVLHGPYGEDGTLQG 144

Query: 71  ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI------ 124
           +LEL  +PY  +G+LASA+  DK   K+V  S G+PV P  +V     D+          
Sbjct: 145 LLELSGVPYVGAGVLASAVGQDKEYMKRVFLSFGLPVGPYEVVRPREWDNDPAAARERIV 204

Query: 125 ------SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                   P  IKP +GGSS+GI  +   +   LD     +  H  + L+E  + G E+ 
Sbjct: 205 DFAGEHGWPLFIKPARGGSSMGITKVDSVE--GLDAAIEEARRHDPKFLVESLLRGREIE 262

Query: 179 CGVMG-----DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           CGV+       AS+      V   DFY +E KY   ++  ++PA +  +   EV+RLA  
Sbjct: 263 CGVLEFEDGPRASVPAEIPPVTSHDFYDFEAKY-IDSAAGLVPAPLTEEQTAEVRRLAVA 321

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           A  A+ C G+ R+DF            EIN  PG TP+S++P M   +G  + EL+  ++
Sbjct: 322 AFDAVSCEGLVRADFFLTE-DGTFVINEINTLPGFTPISMYPRMWQESGVDYPELVDRLI 380

Query: 294 EDA 296
           + A
Sbjct: 381 QAA 383


>gi|126699011|ref|YP_001087908.1| D-alanine--D-alanine ligase [Clostridium difficile 630]
 gi|254974958|ref|ZP_05271430.1| D-alanine--D-alanine ligase [Clostridium difficile QCD-66c26]
 gi|255092347|ref|ZP_05321825.1| D-alanine--D-alanine ligase [Clostridium difficile CIP 107932]
 gi|255100429|ref|ZP_05329406.1| D-alanine--D-alanine ligase [Clostridium difficile QCD-63q42]
 gi|255314086|ref|ZP_05355669.1| D-alanine--D-alanine ligase [Clostridium difficile QCD-76w55]
 gi|255516765|ref|ZP_05384441.1| D-alanine--D-alanine ligase [Clostridium difficile QCD-97b34]
 gi|255649864|ref|ZP_05396766.1| D-alanine--D-alanine ligase [Clostridium difficile QCD-37x79]
 gi|260683022|ref|YP_003214307.1| D-alanine--D-alanine ligase [Clostridium difficile CD196]
 gi|260686620|ref|YP_003217753.1| D-alanine--D-alanine ligase [Clostridium difficile R20291]
 gi|306519962|ref|ZP_07406309.1| D-alanine--D-alanine ligase [Clostridium difficile QCD-32g58]
 gi|115250448|emb|CAJ68271.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)
           (D-Ala-D-Ala ligase) [Clostridium difficile]
 gi|260209185|emb|CBA62427.1| D-alanine--D-alanine ligase B [Clostridium difficile CD196]
 gi|260212636|emb|CBE03671.1| D-alanine--D-alanine ligase B [Clostridium difficile R20291]
          Length = 299

 Score =  304 bits (780), Expect = 9e-81,   Method: Composition-based stats.
 Identities = 94/298 (31%), Positives = 144/298 (48%), Gaps = 9/298 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59
           +AV+MGGISSEREVSL+SGK   + L+   ++V ++ +D +           D A   LH
Sbjct: 3   IAVIMGGISSEREVSLNSGKEIYNNLDKNKYEVVKVIIDDKKDIFTKIPEDIDFAILALH 62

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL---VNRF 116
           G FGEDG +Q+ILE ++IPY+  G L S + MDK  +K+++    +P  P +L   V+  
Sbjct: 63  GKFGEDGCIQSILETMDIPYSGCGPLCSGMCMDKNITKKMLRDSNLPTAPWVLVKSVDEI 122

Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
             D    I  P  IKP  GGSS+    I     +   + +       + ++IE+Y+ G E
Sbjct: 123 DYDEIDNIGYPVFIKPNSGGSSVATFFIHSKDEVEEAVRKGL--EVDEFVMIEKYIPGGE 180

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
            T  ++         I    S F+ YE KYS           +  ++ K V  ++    +
Sbjct: 181 YTSFILNGEVFPTISIK-SDSGFFDYEAKYSVEKGAKEEVVYLDEELQKRVNEISETCWK 239

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
              C+   R D +        + LE+N  PGMT  S+ P  AA  G  + ELL  ++E
Sbjct: 240 IFNCKAYVRVDMIISE--GIPYVLELNTLPGMTQTSLIPRSAAARGIKYSELLDKLIE 295


>gi|326790267|ref|YP_004308088.1| D-alanine/D-alanine ligase [Clostridium lentocellum DSM 5427]
 gi|326541031|gb|ADZ82890.1| D-alanine/D-alanine ligase [Clostridium lentocellum DSM 5427]
          Length = 298

 Score =  304 bits (780), Expect = 9e-81,   Method: Composition-based stats.
 Identities = 86/299 (28%), Positives = 151/299 (50%), Gaps = 8/299 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + ++MGGISSE+EVSL SG+     +    ++   I +      +      D AF  LHG
Sbjct: 3   VGIIMGGISSEKEVSLKSGEEVLKHINKTKYEAIPIVLHSKKEAIDKLSGIDFAFLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG +QA+LE L+IPY+   +L SAL M+K  +K++++S  +     IL+      +
Sbjct: 63  RFGEDGTIQALLETLDIPYSGCRVLTSALCMNKHLTKKLLASENITTPKGILIKASEPLN 122

Query: 121 QHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
             +   ++ P ++KP  GGSS+G   ++    +   + +  ++ + ++LLIE+Y+ G E+
Sbjct: 123 SSITSTLNYPLIVKPNTGGSSIGTCKVENKTDLLSAIDE--AFKYDEELLIEEYIAGEEI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           T  V+         I      F+ Y  KY+   +   + A +P  +  +V ++A      
Sbjct: 181 TSFVLDGEVFPTVCIKPRFGQFFDYNSKYTINGALEEI-ALLPSILQDKVTQIAEKIWAL 239

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             C+   R DF+    +  ++ LEIN  PG+T  S+ P+ A   G  F  L+  ++  +
Sbjct: 240 FNCKSYCRIDFII--KNETIYVLEINTLPGLTETSLIPQSAKAKGIDFTTLIDAIIRTS 296


>gi|145593823|ref|YP_001158120.1| D-alanine--D-alanine ligase [Salinispora tropica CNB-440]
 gi|145303160|gb|ABP53742.1| D-alanine--D-alanine ligase [Salinispora tropica CNB-440]
          Length = 368

 Score =  304 bits (780), Expect = 9e-81,   Method: Composition-based stats.
 Identities = 98/355 (27%), Positives = 162/355 (45%), Gaps = 62/355 (17%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +AV+ GG S E  +S  S  +  +AL+   ++V  + + R+   VL    P         
Sbjct: 9   VAVVFGGRSPEHGISCVSAGSVLAALDPDEYEVVPVGISRAGQWVLTGSDPAELAISARR 68

Query: 52  --------------------------------------DLAFNVLHGNFGEDGLVQAILE 73
                                                 D+ F VLHG +GEDG +Q +LE
Sbjct: 69  LPEVTAESGAAIMLNADPSHSGLMVLDATAGPRALADVDVVFPVLHGAYGEDGSIQGMLE 128

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF---TMDSQHLISPPYVI 130
           +  IPY  + + ASA +MDK  +K++ ++ G+P+ P +++      T   +  +  P  +
Sbjct: 129 MAGIPYVGANVFASAAAMDKEFTKKLCAAEGIPIGPYVVLRSGMTLTEQDKQRLGLPVFV 188

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190
           KP + GSS GI  I     +  D   +++     ++L+E  V G E+ CGV+   +  V 
Sbjct: 189 KPSRAGSSFGITKISDWAEL--DAAVATARQIDSKVLVEAAVVGREIECGVLEGEAGGVP 246

Query: 191 E-------IAVPKSDFYSYELKYSSLNS--THVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241
           E         V + DFY +E KY    S   + +PA +   + ++VQ  A  A  A+ C 
Sbjct: 247 EASVLAEVRVVGEYDFYDFEAKYIDAESACEYDIPAGLSERVTRQVQEYAVRAFTALDCA 306

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           G++R+DF   P    ++  EIN  PG TP S+FP M A +G  + +L+  ++  A
Sbjct: 307 GLARADFFVTP-ELDIYLNEINTMPGFTPSSMFPRMWAASGLEYPKLVNRLIRTA 360


>gi|302334812|ref|YP_003800019.1| D-alanine--D-alanine ligase [Olsenella uli DSM 7084]
 gi|301318652|gb|ADK67139.1| D-alanine--D-alanine ligase [Olsenella uli DSM 7084]
          Length = 330

 Score =  304 bits (780), Expect = 9e-81,   Method: Composition-based stats.
 Identities = 118/308 (38%), Positives = 173/308 (56%), Gaps = 16/308 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGF-KVSQIDVD-RSVGLVLAHLKPDLAFNVL 58
           +AVL GG S ER++SL SG AC  AL +AGF +V  +D+        L   + D+AF  L
Sbjct: 11  VAVLSGGWSDERDISLQSGMACMGALREAGFVRVELLDIAAPDFAARLLDGRFDVAFVAL 70

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NR 115
           HG +GEDG +Q +LE+L IPYT SG+LASA+  +K  +K +    G+PV   + +    R
Sbjct: 71  HGRYGEDGCIQGLLEVLHIPYTFSGVLASAVGTEKAVAKALYREAGIPVPEGVDLPEGTR 130

Query: 116 FTMDSQHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
            T D        +  P  +KP   GSS G+  + +   +   + +++S   GD++L+E  
Sbjct: 131 LTSDQADRLVRTLGLPLFVKPAANGSSFGVTRVTETAQLADAVARAAS--EGDRVLVETC 188

Query: 172 VDGIELTCGVMGDA---SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           V+G E+T  V+G+    +L + EIA   S+FY  ++KY      HV+PA++    Y+   
Sbjct: 189 VEGTEITVPVIGNDDPVALPIVEIAF-DSEFYDAKVKYEPAALHHVIPARLDQTTYERAS 247

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
            LA  AH+A+GCRG+SRSDF+       V  LE N  PGMT  S+ P+ A +AG  F +L
Sbjct: 248 ELAVRAHRALGCRGVSRSDFIVTAEGAPV-ILETNTIPGMTETSLLPDSARHAGIGFPDL 306

Query: 289 LLWMVEDA 296
               VE A
Sbjct: 307 CRRFVELA 314


>gi|225376500|ref|ZP_03753721.1| hypothetical protein ROSEINA2194_02142 [Roseburia inulinivorans DSM
           16841]
 gi|225211672|gb|EEG94026.1| hypothetical protein ROSEINA2194_02142 [Roseburia inulinivorans DSM
           16841]
          Length = 351

 Score =  304 bits (780), Expect = 9e-81,   Method: Composition-based stats.
 Identities = 109/345 (31%), Positives = 172/345 (49%), Gaps = 55/345 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-----DRSVGLV---------- 45
           + VL GG+S+ER+VS  +G   + AL + G  V  +DV     D+   L           
Sbjct: 3   IVVLAGGLSTERDVSFKTGDMVSKALRENGHNVILLDVFMGYSDKEENLTGIFDRTEEVS 62

Query: 46  ------------LAHLKP---------------------DLAFNVLHGNFGEDGLVQAIL 72
                       LA +K                      D+ F  LHG  GE+G +QA  
Sbjct: 63  VQVKDIPETAPDLAKVKASRKDQSDCFFGPNVINMCRMADIVFMALHGENGENGKIQAAF 122

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFTMDSQHLISPPYV 129
           +L  I YT +G L+SAL+MDK  +KQ+  + G+P    I +   NR     +  +  P V
Sbjct: 123 DLFGIKYTGTGYLSSALAMDKGMAKQLFIAGGIPTPQGISMKKENRKDSAKELGLKLPCV 182

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           +KP  GGSS+G+ +++ +      L ++  W   D L+IE+YV+G E + GV+   +L +
Sbjct: 183 VKPCCGGSSIGVTIVRTEDEFKSALDEAFKWE--DNLIIEEYVEGREFSVGVIDYKALPI 240

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
            EIA P   FY Y+ KY + ++    PA++P +I +++Q  A    + +G    SRSDFL
Sbjct: 241 IEIA-PIQGFYDYKNKYKAGSAVETCPAELPEEITEQMQHYAERVAEVLGLNTYSRSDFL 299

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            +  + +++ LE N  PGMTP S+ P+ A   G +F +L   ++E
Sbjct: 300 LNK-NNEIYCLEANTLPGMTPTSLLPQEAGVLGINFNQLCEKLIE 343


>gi|49087034|gb|AAT51407.1| PA4201 [synthetic construct]
          Length = 347

 Score =  304 bits (780), Expect = 9e-81,   Method: Composition-based stats.
 Identities = 104/326 (31%), Positives = 159/326 (48%), Gaps = 37/326 (11%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50
           +AVL GG S ER+VS +SG     AL  AG +V  +D    +       +          
Sbjct: 8   VAVLFGGSSEERDVSTASGAQVIQALRSAGHQVLAVDTASGLLGAEEERRLLASKVKEVP 67

Query: 51  ------------------------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
                                    D+ F  LHG  GEDG +QA+L+     YT SG LA
Sbjct: 68  PDSDSLAIIRSGKQSLLSAGELAGVDVFFLALHGGTGEDGTLQALLDAGGFAYTGSGHLA 127

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           SA++MDK  +K++  + GV     ++      + +  +  P V+KP   GS++G+ ++  
Sbjct: 128 SAMAMDKDVAKRLFLAAGVETASWLMAPASEEEVREQLGFPLVVKPNSQGSTVGLSIVHS 187

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
              +   +  +    +GD++++E++V G E+T GV+ D +L V EI +   + + YE KY
Sbjct: 188 QAELQPAIELAG--RYGDEVMLERFVAGREVTVGVLDDQALPVGEILLGGQEVFDYEHKY 245

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
            +     V PA +P  I  E QRLA   H+A+   G SR+DF  D   R ++ LE+N  P
Sbjct: 246 QAGAVREVFPADLPPAIAAEAQRLALKVHRALKLSGYSRTDFRLDEQGR-LWCLEVNTLP 304

Query: 267 GMTPVSIFPEMAAYAGYSFRELLLWM 292
           GMT  S+ P+ AA AG  F EL   +
Sbjct: 305 GMTATSLLPQAAAAAGIGFAELCERI 330


>gi|239944584|ref|ZP_04696521.1| D-alanyl-alanine synthetase A [Streptomyces roseosporus NRRL 15998]
          Length = 367

 Score =  304 bits (780), Expect = 9e-81,   Method: Composition-based stats.
 Identities = 107/365 (29%), Positives = 157/365 (43%), Gaps = 71/365 (19%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP---------- 51
           AV+ GG SSE  +S+ +  A   A++   + V  I +       L   +P          
Sbjct: 2   AVVFGGRSSEHGISVVTAGAVMKAIDRTKYDVLPIGITADGRWALTADEPERMAITDRKV 61

Query: 52  ----------------------------------------DLAFNVLHGNFGEDGLVQAI 71
                                                   D+ F VLHG +GEDG +Q +
Sbjct: 62  PDVDLLTGSAEGSVVLSVDPGSREVVYTEPGAVPKALGEVDVVFPVLHGPYGEDGTLQGL 121

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI------- 124
           LEL  +PY  +G+LASA+  DK   K+V  S G+PV P  +V     D+           
Sbjct: 122 LELSGVPYVGAGVLASAVGQDKEYMKRVFISYGLPVGPYEVVRPREWDNDPAAARKRIVD 181

Query: 125 -----SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
                  P  IKP +GGSS+GI  +  D    LD     +  H  + L+E  + G E+ C
Sbjct: 182 FAGEHGWPLFIKPARGGSSMGITKV--DDLSGLDAAIEEARRHDPKFLVESLLRGREIEC 239

Query: 180 GVMG-----DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
           GV+       AS+      V   DFY +E KY   ++T ++PA +  +   EVQRLA  A
Sbjct: 240 GVLEFEDGPRASVPAEIPPVTAHDFYDFEAKY-IDSATGLVPAPLTGEQTAEVQRLAVAA 298

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             A+ C G+ R+DF            EIN  PG TP+S++P M   +G S+ EL+  +++
Sbjct: 299 FDAVSCEGLVRADFFLTE-DGTFVINEINTLPGFTPISMYPRMWQESGVSYPELVDRLIQ 357

Query: 295 DASCL 299
            A   
Sbjct: 358 AALTR 362


>gi|124026431|ref|YP_001015546.1| D-alanine--D-alanine ligase [Prochlorococcus marinus str. NATL1A]
 gi|166198498|sp|A2C472|DDL_PROM1 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|123961499|gb|ABM76282.1| D-alanine--D-alanine ligase [Prochlorococcus marinus str. NATL1A]
          Length = 348

 Score =  304 bits (780), Expect = 9e-81,   Method: Composition-based stats.
 Identities = 92/341 (26%), Positives = 168/341 (49%), Gaps = 47/341 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASAL----EDAGFKVSQIDVDR---------------- 40
           + V+ GG SSE EVS+ S K   +AL        +    + +D+                
Sbjct: 8   IGVVFGGKSSEHEVSIKSAKTIYNALSHLSNKERYVARPVYIDKYGYWHDYIFSESILYD 67

Query: 41  --------SVGLVLAHL----KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
                      + L +L      D+ F  LHG  GEDG++Q + +    P+  SG+L SA
Sbjct: 68  KKDHLIFEDRRVNLTNLSNMEDIDVWFPCLHGPNGEDGVIQGLFKSTGKPFVGSGVLGSA 127

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ-----------HLISPPYVIKPLKGGS 137
           L MDK+  K V  S  +P  P + +N+  + +             +I+ P  IKP   GS
Sbjct: 128 LGMDKIAMKSVFKSYNLPQVPYVSLNKADIQNNLYMKSIYEQINKIINYPCFIKPANLGS 187

Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK- 196
           S+GI      +     +    +  + +++++E+ ++G EL CGV+G + +  + +   K 
Sbjct: 188 SVGITKAYSKEEFITGI--EFAAKYDERIIVEKSIEGRELECGVLGKSIMKSSVVGEVKF 245

Query: 197 -SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255
            +D+Y+YE KY++  S+ ++PA + ++I  ++Q+LA  A +AI   G++R DF +   ++
Sbjct: 246 QTDWYTYESKYNANLSSTIIPADLNIEISNKIQKLAIEACKAINAYGLARVDFFYQESTQ 305

Query: 256 KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +++  E+N  PG T  S++P +   +G    +L+  ++E A
Sbjct: 306 QIYINEVNTLPGFTKTSMYPTLWEASGLKLEKLVASLIEIA 346


>gi|153941210|ref|YP_001389824.1| D-alanine--D-alanine ligase [Clostridium botulinum F str.
           Langeland]
 gi|166198480|sp|A7GAL4|DDL_CLOBL RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|152937106|gb|ABS42604.1| D-alanine--D-alanine ligase [Clostridium botulinum F str.
           Langeland]
 gi|295317911|gb|ADF98288.1| D-alanine--D-alanine ligase [Clostridium botulinum F str. 230613]
          Length = 300

 Score =  304 bits (780), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 95/297 (31%), Positives = 157/297 (52%), Gaps = 9/297 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + ++MGGIS+EREVSL+SG+     LE    ++  I +D+   ++      D AF  LHG
Sbjct: 3   IGIIMGGISTEREVSLNSGREVIKYLELLEHEIIPIIIDKKEDVMEKAKGIDFAFLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI---LVNRFT 117
            FGEDG VQ++L+ L+IPY+  G L SA+ MDK  +K+++    +     +    V    
Sbjct: 63  EFGEDGTVQSVLQTLDIPYSGCGPLTSAICMDKDMTKKILKYANINTADWVNVSSVENID 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            ++   I  P  +KP  GGSS+   ++K  + I   +  +    +  +++IE Y  G E+
Sbjct: 123 YEAIEKIGYPVFVKPNSGGSSVATNLVKDKEGIKEAVELAL--KYDKEVMIENYTKGEEI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC ++    L V  I  P ++F+ Y  KY+   S  V+  ++  +++K+V+ +A    + 
Sbjct: 181 TCCMLNGKMLPVLAIR-PHAEFFDYTAKYADGGSDEVV-IELEENLHKKVEEMALACWKE 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           + C    R D +        + LE+N  PGMT  S+FP+ A   G SF ELL  +V+
Sbjct: 239 LKCEVYVRVDMIV--KDGIPYVLELNTLPGMTKNSLFPKSANAVGISFAELLNSIVK 293


>gi|297565114|ref|YP_003684086.1| D-alanine/D-alanine ligase [Meiothermus silvanus DSM 9946]
 gi|296849563|gb|ADH62578.1| D-alanine/D-alanine ligase [Meiothermus silvanus DSM 9946]
          Length = 324

 Score =  304 bits (779), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 98/318 (30%), Positives = 161/318 (50%), Gaps = 27/318 (8%)

Query: 3   VLMGGISSEREVSLSSGKACASAL---------------------EDAGFKVSQIDVDRS 41
           ++ GG S E EVSLSS +   +A+                     + A    S  + + +
Sbjct: 8   LIAGGRSGEHEVSLSSARGVLAAMPHPTDLAVIAKDGKWLLGQAAQRALHTGSAEEGEHA 67

Query: 42  VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
               +      +AF +LHG  GEDG +Q   E+L +PY  +G+ ASAL MDK   K+V++
Sbjct: 68  FPPPIEWRAYAVAFPLLHGTLGEDGTIQGFFEILGLPYVGAGVTASALCMDKDLCKRVLA 127

Query: 102 SCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN 161
             G+PV P +   R           PY +KP   GSS+G+  +K DQ     L ++  W+
Sbjct: 128 QAGIPVVPWVSFYRGDPVPPLPFPAPYFVKPANTGSSVGVSKVKTDQDGREALEEAFRWD 187

Query: 162 HGDQLLIEQYVDG-IELTCGVMGD--ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
              +++IEQ ++G  EL   ++G+  A   V      +S+FY Y+ KY+   +   +PA+
Sbjct: 188 R--KVVIEQGLEGVRELEIALLGNIYAEPSVIGEISYQSEFYDYQTKYTEGLAHMRIPAR 245

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278
           IP ++ K ++ LA  A++ +G RG++R DF        ++  E+N  PG TP S++P++ 
Sbjct: 246 IPAELEKRIRELAVAAYRVLGVRGMARVDFFLS-QDGTLYLNELNTIPGFTPTSMYPKLW 304

Query: 279 AYAGYSFRELLLWMVEDA 296
             +G  + ELL  +V  A
Sbjct: 305 QASGMRYPELLDRLVRLA 322


>gi|89896436|ref|YP_519923.1| hypothetical protein DSY3690 [Desulfitobacterium hafniense Y51]
 gi|89335884|dbj|BAE85479.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 353

 Score =  304 bits (779), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 96/338 (28%), Positives = 149/338 (44%), Gaps = 45/338 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           +A++ GG S E  VS+ S    A  L+   ++   I + ++    L              
Sbjct: 6   IAIIFGGCSEEHPVSVKSAGEVAKNLDLDKYEPFYIGITKNGVWQLCRYPEANWENGICP 65

Query: 47  ---------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
                                  +  DL F VLHG FGEDG VQ +LEL  IPY    I 
Sbjct: 66  SVILSPDRSLQGLLVLEQGQYKTIPLDLVFPVLHGKFGEDGAVQGLLELSGIPYVGCDIP 125

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145
           +SAL MDK  +  V  + G+       V          ++ P  +KP + GSS G+  + 
Sbjct: 126 SSALCMDKSLAYIVAGNAGIATPKFRTVTAKEAIDAERLAYPVYVKPARSGSSFGVTKVC 185

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYS 201
           + + +   +  +S   +  ++LIE+ V G E+ C + G+     + +V +I +    F  
Sbjct: 186 RQEELLSAVAIAS--QYDSKVLIEEAVIGTEVGCAIFGNDLDLMAGEVDQIRLSHGFFRI 243

Query: 202 Y---ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
           +   E +  S NST ++PA I       VQ  A   ++A+GC+G++R D        +V 
Sbjct: 244 HQENEPEKGSENSTLIVPADISPQARSRVQETAKAIYRALGCKGLARVDMFL-KEDGEVI 302

Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             E+N  PGMT  S FP M A AG  F E++  +V  A
Sbjct: 303 LNEVNTLPGMTSYSRFPRMMAAAGLPFAEVIDRLVSLA 340


>gi|302542245|ref|ZP_07294587.1| D-alanine-D-alanine ligase [Streptomyces hygroscopicus ATCC 53653]
 gi|302459863|gb|EFL22956.1| D-alanine-D-alanine ligase [Streptomyces himastatinicus ATCC 53653]
          Length = 390

 Score =  304 bits (779), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 99/363 (27%), Positives = 155/363 (42%), Gaps = 71/363 (19%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +AV+ GG SSE  +S+ +  A   A++   + V  I +       L    P         
Sbjct: 24  VAVVFGGRSSEHAISVVTAGAVLRAIDREKYDVLPIGITADGRWALTADAPERMAIADRQ 83

Query: 52  -----------------------------------------DLAFNVLHGNFGEDGLVQA 70
                                                    D+ F +LHG +GEDG +Q 
Sbjct: 84  LPSVERLAESEEGSVVLPVDPSSREVVYSEPGAVPKALGDVDVVFPMLHGPYGEDGTLQG 143

Query: 71  ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM------------ 118
           +LEL  +PY  +G+LASA+ MDK   K+V  S G+PV P  ++                 
Sbjct: 144 LLELSGVPYVGAGVLASAVGMDKEYMKRVFVSFGLPVGPYEVLRPRDWERDPAAARARIT 203

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           D       P  +KP + GSS+GI  +   + +  D     +  H  ++++E  + G E+ 
Sbjct: 204 DFAAEHGWPVFVKPSRAGSSIGITKVDGPEQL--DEAIEEARRHDPKVIVEALLRGREIE 261

Query: 179 CGVMG-----DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           CGV+       AS+      V   DFY +E KY    +  V+PA +  +  + VQ LA  
Sbjct: 262 CGVLEFEDGPRASVPAEIPPVSTHDFYDFEAKY-IDAAPGVVPAPLTAEETERVQELAVR 320

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           A  A+ C G+ R+DF       +    EIN  PG TP+S++P M   +G S+ EL+  ++
Sbjct: 321 AFDAVSCEGLVRADFFLLDS-GEFVINEINTMPGFTPISMYPRMWQESGVSYPELVDRLI 379

Query: 294 EDA 296
           + A
Sbjct: 380 QAA 382


>gi|306824762|ref|ZP_07458106.1| D-alanine-D-alanine ligase [Streptococcus sp. oral taxon 071 str.
           73H25AP]
 gi|304432973|gb|EFM35945.1| D-alanine-D-alanine ligase [Streptococcus sp. oral taxon 071 str.
           73H25AP]
          Length = 347

 Score =  304 bits (779), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 98/334 (29%), Positives = 161/334 (48%), Gaps = 41/334 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQ------------------------- 35
           + +L GG S+EREVS+ S ++   A+    F V                           
Sbjct: 5   IILLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDFIKTQEFSQTPGQEDRL 64

Query: 36  -----IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
                ID D+ +     + +  + F VLHG  GEDG VQ  LE+L++PY    IL+S+L+
Sbjct: 65  MTNATIDWDKKIAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLA 124

Query: 91  MDKMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
           MDK+ +K+V+ S G+   P +       V     + +  ++ P   KP   GSS+GI   
Sbjct: 125 MDKITTKRVLESVGIAQVPYVAIVEGDDVTAKIAEVEEKLTYPVFTKPSNMGSSVGISKS 184

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202
           +  + +   L    ++ +  ++L+EQ V+  E+  G++G+  +  T     V    FY Y
Sbjct: 185 ENQEELRQAL--ELAFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDY 242

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
           + KY     T  +PAKI  D+   +++ A  A +AIG  G+SR DF +     ++F  E+
Sbjct: 243 DAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDFFYTDK-GEIFLNEL 301

Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           N  PG T  S++P +    G S+ EL+  +V+ A
Sbjct: 302 NTMPGFTQWSMYPLLWDNMGISYPELIERLVDLA 335


>gi|322804734|emb|CBZ02286.1| D-alanine--D-alanine ligase [Clostridium botulinum H04402 065]
          Length = 300

 Score =  304 bits (779), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 96/297 (32%), Positives = 157/297 (52%), Gaps = 9/297 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGGIS+EREVSL+SG+     LE    ++  I +D+   ++      D AF  LHG
Sbjct: 3   IGVIMGGISTEREVSLNSGREVIKYLELLEHEIIPIIIDKKEDVMEKAKGIDFAFLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI---LVNRFT 117
            FGEDG VQ++L+ L+IPY+  G L SA+ MDK  +K+++    +     +    V    
Sbjct: 63  EFGEDGTVQSVLQTLDIPYSGCGPLTSAICMDKDMTKKILKYSNINTADWVNVSSVENID 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            ++   I  P  +KP  GGSS+   ++K  + I   +  +    +  +++IE Y  G E+
Sbjct: 123 YEAIEKIGYPVFVKPNSGGSSVATNLVKDKEGIKEAVELAL--KYDKEVMIENYTKGEEI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC ++    L V  I  P ++F+ Y  KY+   S  V+  ++  +++K+V+ +A    + 
Sbjct: 181 TCCMLNGKMLPVLAIR-PHAEFFDYTAKYADGGSDEVV-IELEENLHKKVEEMALACWKE 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           + C    R D +        + LE+N  PGMT  S+FP+ A   G SF ELL  +V+
Sbjct: 239 LKCEVYVRVDMIV--KDGIPYVLELNTLPGMTKNSLFPKSANAVGISFAELLNSIVK 293


>gi|307702298|ref|ZP_07639256.1| D-alanine--D-alanine ligase [Streptococcus oralis ATCC 35037]
 gi|307624101|gb|EFO03080.1| D-alanine--D-alanine ligase [Streptococcus oralis ATCC 35037]
          Length = 347

 Score =  304 bits (779), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 98/334 (29%), Positives = 162/334 (48%), Gaps = 41/334 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQ------------------------- 35
           + +L GG S+EREVS+ S ++   A+    F V                           
Sbjct: 5   IILLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDFIKTQEFSQTPGQEDRL 64

Query: 36  -----IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
                ID D+ +     + +  + F VLHG  GEDG VQ  LE+L++PY    IL+S+L+
Sbjct: 65  MTNDTIDWDKKIAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLA 124

Query: 91  MDKMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
           MDK+ +K+V+ S G+   P +       V     + +  ++ P   KP   GSS+GI   
Sbjct: 125 MDKITTKRVLESAGIAQVPYVAIVEGDDVTSKIAEVEEKLTYPVFTKPSNMGSSVGISKS 184

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202
           +  + +   L    ++ +  ++L+EQ V+  E+  G++G+  +  T     V    FY Y
Sbjct: 185 ENQEELRQAL--ELAFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDY 242

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
           + KY     T  +PAKI  D+   +++ A +A +AIG  G+SR DF +     ++F  E+
Sbjct: 243 DAKYIDNKITMDIPAKISDDVVAVMRQNAEIAFRAIGGLGLSRCDFFYTDK-GEIFLNEL 301

Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           N  PG T  S++P +    G S+ EL+  +V+ A
Sbjct: 302 NTMPGFTQWSMYPLLWDNMGISYPELIEHLVDLA 335


>gi|168491447|ref|ZP_02715590.1| D-alanine--D-alanine ligase (D-alanylalanine
           synthetase)(D-Ala-D-Ala ligase) [Streptococcus
           pneumoniae CDC0288-04]
 gi|183574225|gb|EDT94753.1| D-alanine--D-alanine ligase (D-alanylalanine
           synthetase)(D-Ala-D-Ala ligase) [Streptococcus
           pneumoniae CDC0288-04]
          Length = 347

 Score =  304 bits (779), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 99/334 (29%), Positives = 162/334 (48%), Gaps = 41/334 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKV--------------------------- 33
           + +L GG S+EREVS+ S ++   A++   F V                           
Sbjct: 5   IILLYGGRSAEREVSVLSAESVMRAVDYDRFTVKTFFISQSGDFIKTQEFSHAPGQEDRL 64

Query: 34  ---SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
                ID D+ V     + +  + F VLHG  GEDG VQ  LE+L++PY    IL+S+L+
Sbjct: 65  MTNETIDWDKKVAPSAIYEEGAVVFPVLHGPVGEDGSVQGFLEVLKMPYVGCNILSSSLA 124

Query: 91  MDKMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
           MDK+ +K+V+ S G+   P +       V     + +  ++ P   KP   GSS+GI   
Sbjct: 125 MDKITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLAYPVFTKPSNMGSSVGISKS 184

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202
           +  + +   L    ++ +  ++L+EQ V+  E+  G++G+  +  T     V    FY Y
Sbjct: 185 ENQEELRQALKL--AFRYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDY 242

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
           + KY     T  +PAKI  D+   +++ A  A +AIG  G+SR DF +     ++F  E+
Sbjct: 243 DAKYIDNKVTMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDFFYTDK-GEIFLNEL 301

Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           N  PG T  S++P +    G S+ EL+  +V+ A
Sbjct: 302 NTMPGFTQWSMYPLLWDNVGISYPELIERLVDLA 335


>gi|283468520|emb|CAP18800.1| putative D-ala D-ala ligase [bacterium Ellin514]
          Length = 304

 Score =  304 bits (779), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 99/296 (33%), Positives = 154/296 (52%), Gaps = 6/296 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V++GG S+ REVSL +G A A AL   G +V ++D       + A  +  + F  LHG
Sbjct: 12  ITVMLGGPSAXREVSLRTGGAVAKALRSLGHRVDELDPKEKKWSLPAGTE--VVFLALHG 69

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG VQ  L+ L IPYT     AS L  DK+ +KQ     GVP    ++    +   
Sbjct: 70  TYGEDGTVQRELDKLGIPYTGCDAEASRLGFDKILTKQKCVEAGVPTARFMIFESRSAVW 129

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
                PP V+KP++ GSS+G+  + +       L ++    +  Q+L+E+ + G E T G
Sbjct: 130 PMGWQPPVVLKPVRQGSSVGLQFVDRVGDWSKKLAEAL--RYDTQVLMEERILGRETTVG 187

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           ++G+  L + E+  PK+  Y Y+ KY++  + ++ PA     +   +Q  A  A +AIG 
Sbjct: 188 ILGNRPLPIVEVR-PKAGNYDYQNKYTAGATEYLCPAPFDEAVTARIQEAALGAFKAIGG 246

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           R  S  D +  P + +   LE+N  PGMT  S+ P+ A  AG  + EL   MV+ A
Sbjct: 247 RDYSXVDVMVRP-NGEPVVLEVNTLPGMTETSLLPKAAMAAGIGYAELCQQMVDLA 301


>gi|259047321|ref|ZP_05737722.1| D-alanine--D-alanine ligase [Granulicatella adiacens ATCC 49175]
 gi|259036017|gb|EEW37272.1| D-alanine--D-alanine ligase [Granulicatella adiacens ATCC 49175]
          Length = 357

 Score =  304 bits (779), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 82/348 (23%), Positives = 154/348 (44%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           + V+ GG S+E ++S+ +  +    +    + V  + + +    +               
Sbjct: 3   VVVIYGGKSAEHDISILTAGSIIKEIYFEYYDVEPVYITKEGTWLKGEALKAPVAFDQAL 62

Query: 50  -----------------------------KPD-LAFNVLHGNFGEDGLVQAILELLEIPY 79
                                         PD + F +LHG  GEDG +Q + E+L++PY
Sbjct: 63  RLTEGLEARFATVEGEVSTGVRIQPSDIAGPDTVVFPILHGPNGEDGTIQGLFEILDLPY 122

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVI 130
              G+LASA  MDK+ SK +    G+P  P +   +              +  +  P  +
Sbjct: 123 VGCGVLASANGMDKIASKHLFQQAGIPQVPFVPFVKADFKKSPEAIYNRIEGTLRYPVFV 182

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--D 188
           KP   GSS+GI      + +   +    +  +  ++++EQ +D  E+   V+G+  +   
Sbjct: 183 KPANMGSSVGISKATNREELTAAI--EEALKYDRRIVVEQGIDAREVEVAVLGNDEVNTS 240

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           V    V ++ FY Y  KY +  +T  +PA IP ++  +++  A  A +AI   G++R DF
Sbjct: 241 VVGEVVKQAGFYDYNEKYINNTTTLQIPAAIPEEVSAKIREYAETAFRAIDGSGLTRCDF 300

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                +++VF  E+N  PG T  S++P++    G S+++L+  ++  A
Sbjct: 301 FLTE-TQEVFINEVNTMPGFTQFSMYPKLWEAMGISYKDLVEELIRLA 347


>gi|110803915|ref|YP_698634.1| D-alanine--D-alanine ligase [Clostridium perfringens SM101]
 gi|123047396|sp|Q0STC3|DDL_CLOPS RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|110684416|gb|ABG87786.1| D-alanine--D-alanine ligase [Clostridium perfringens SM101]
          Length = 301

 Score =  304 bits (779), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 95/299 (31%), Positives = 162/299 (54%), Gaps = 9/299 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGGISSERE+S+ SG +   AL+   ++   I ++    L+      D A   LHG
Sbjct: 3   VGVIMGGISSEREISIQSGNSVVHALDKDKYEAIPIVLNEKEDLIEKVKGIDFALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL---VNRFT 117
            FGEDG VQ++L+ L IP++  G L+SA+ MDK  +K++++   V     ++   V+   
Sbjct: 63  KFGEDGTVQSVLKTLGIPFSGCGPLSSAICMDKDMTKRILAFGNVRTARWVMVSSVDEID 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            +    +  P  IKP  GGSS+   +++  +++   +L++    +  +++IE+Y+ G E+
Sbjct: 123 YEKIENLGYPVFIKPNNGGSSVATTLVESKEAVKDAVLEAL--KYDTEVMIEEYIKGDEI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC ++    L V  I  PK  F+    KY    +   +  K+  D++KEV+++A   ++ 
Sbjct: 181 TCPIIDGKMLPVLAIK-PKGKFFDIASKYEDGGADEFI-VKLNEDLHKEVEKMALETYKL 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           + C   +R D L        + LE+N  PGMT  S+FP+ AA    SF ELL  ++E +
Sbjct: 239 LKCDVYARVDMLVR--DNVPYVLEVNTLPGMTKNSLFPKSAAGINMSFEELLDTIIEKS 295


>gi|288923495|ref|ZP_06417614.1| D-alanine/D-alanine ligase [Frankia sp. EUN1f]
 gi|288345153|gb|EFC79563.1| D-alanine/D-alanine ligase [Frankia sp. EUN1f]
          Length = 390

 Score =  304 bits (779), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 97/353 (27%), Positives = 162/353 (45%), Gaps = 60/353 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV-LAHLKP-------- 51
           + +L GG S+E  +S  S      AL+ + + V  + +D     V L    P        
Sbjct: 33  LVLLFGGRSTEHAISCVSAGGVLRALDRSRYDVIPVGIDPEGRWVVLPEDSPVLTAVSAD 92

Query: 52  --------------------------------------DLAFNVLHGNFGEDGLVQAILE 73
                                                 D+ F +LHG FGEDG +Q +L+
Sbjct: 93  LPTVNAADGIEVTLTPDPTKPRLLVSDPSSPLRDLGTVDVVFPLLHGPFGEDGTIQGLLD 152

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ---HLISPPYVI 130
           +  +PY  SG+ ASA +MDK   K+++++ G+PV P  +V      S+    L+  P  +
Sbjct: 153 MSGLPYVGSGVFASATAMDKQHMKRILAASGLPVGPYTVVRPGQTLSETERELLGLPVFV 212

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG------- 183
           KP +GGSS+GI  +  D    LD    ++ +   ++L+E  + G E+ CGV+        
Sbjct: 213 KPARGGSSIGISRV--DAWADLDTAFKAARSSDPKVLVEAAIVGREIECGVLDRLDGSGP 270

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           +AS+         + FY +E KY S  +   +PA++P ++ + V+  A  A++A+ C G+
Sbjct: 271 EASVPAEITVTSSAGFYDFEAKYVSDGARLDVPAQLPHELTERVRATATAAYEALDCAGL 330

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +R D    P    +   E+N  PG T  S+FP++ A +G  F  L   +V+ A
Sbjct: 331 ARVDMFVTPA-GDIVLNEVNTMPGFTSTSMFPQVWAASGLDFAALTDRLVQLA 382


>gi|225859426|ref|YP_002740936.1| D-alanyl-alanine synthetase A [Streptococcus pneumoniae 70585]
 gi|225721700|gb|ACO17554.1| D-alanine--D-alanine ligase (D-alanylalanine
           synthetase)(D-Ala-D-Ala ligase) [Streptococcus
           pneumoniae 70585]
          Length = 347

 Score =  304 bits (779), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 99/334 (29%), Positives = 161/334 (48%), Gaps = 41/334 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKV--------------------------- 33
           + +L GG S+EREVS+ S ++   A+    F V                           
Sbjct: 5   IILLYGGRSAEREVSVLSAESVMRAVNYDRFIVKTFFISQSGDSIKTQEFSHAPGQEDRL 64

Query: 34  ---SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
                ID D+ V     + +  + F VLHG  GEDG VQ  LE+L++PY    IL+S+L+
Sbjct: 65  MTNETIDWDKKVAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLA 124

Query: 91  MDKMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
           MDK+ +K+V+ S G+   P +       V     + +  ++ P   KP   GSS+GI   
Sbjct: 125 MDKITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLAYPVFTKPSNMGSSVGISKS 184

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202
           +  + +   L    ++ +  ++L+EQ V+  E+  G++G+  +  T     V    FY Y
Sbjct: 185 ENQEELRQALKL--AFRYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDY 242

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
           + KY     T  +PAKI  D+   +++ A  A +AIG  G+SR DF +     ++F  E+
Sbjct: 243 DAKYIDNKVTMDIPAKISDDVVAVMRQNAEAAFRAIGGLGLSRCDFFYTDK-GEIFLNEL 301

Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           N  PG T  S++P +    G S+ EL+  +V+ A
Sbjct: 302 NTMPGFTQWSMYPLLWENMGISYPELIERLVDLA 335


>gi|189219419|ref|YP_001940060.1| D-alanine-D-alanine ligase [Methylacidiphilum infernorum V4]
 gi|229485964|sp|B3DVV9|DDL_METI4 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|189186277|gb|ACD83462.1| D-alanine-D-alanine ligase [Methylacidiphilum infernorum V4]
          Length = 303

 Score =  304 bits (779), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 104/294 (35%), Positives = 154/294 (52%), Gaps = 9/294 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S ERE+SL + KA   AL   G+++S IDV      +    +  + F  +HG
Sbjct: 9   IAVLKGGPSEEREISLRTAKAVEDALSSLGYEISSIDVTTEKFEIPRDAE--ICFLCIHG 66

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
           +FGEDG +Q +L    IP+T S   +S  + DK  SK +    G+P  P  +V       
Sbjct: 67  SFGEDGQIQRLLMRRGIPFTGSDASSSEKAFDKAWSKTLFIKGGIPTPPFCVVGDG---K 123

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +    PPYVIKP + GSS+GI  +   + +   + +S+ ++H   +L E  + G ELT G
Sbjct: 124 KIPFDPPYVIKPSRQGSSIGIEFVYDIKELDQAIKKSTQYDH--VVLAEALITGKELTVG 181

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           ++   +L V EI  PK  FY Y  KY+   ST+  PA + +D    VQ+ A  A   +GC
Sbjct: 182 ILDGKALPVVEIK-PKEGFYDYHHKYTKGASTYFCPAPLTVDQTSAVQKTALDAFNVLGC 240

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
               R D +    +   + LEIN  PGMT  S+FP  A  +G +F +L   ++E
Sbjct: 241 SVYGRVDIILS-DNGIPWVLEINTIPGMTETSLFPMAAKASGMNFAQLCEKILE 293


>gi|242371574|ref|ZP_04817148.1| D-alanyl-alanine synthetase A [Staphylococcus epidermidis
           M23864:W1]
 gi|242350726|gb|EES42327.1| D-alanyl-alanine synthetase A [Staphylococcus epidermidis
           M23864:W1]
          Length = 361

 Score =  304 bits (779), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 81/339 (23%), Positives = 151/339 (44%), Gaps = 46/339 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           + ++ GG S+E +VS+ + +   +A+    +++  I +                      
Sbjct: 11  ICIVFGGKSAEHDVSILTAQNVLNAINKDQYQIDIIYITNEGEWKKKENITEEIKNTDEL 70

Query: 49  --------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
                                  D  F +LHG  GEDG +Q + E+L+IPY  +G+LA++
Sbjct: 71  VLNDVEAGEISQLLSKGSTGRSYDAVFPLLHGPNGEDGTIQGLFEVLDIPYVGNGVLAAS 130

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSL 139
            SMDK+  KQ+    G+P  P I   R   +             ++ P  +KP   GSS+
Sbjct: 131 SSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYENNIIKLVNDKLTYPVFVKPANLGSSV 190

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKS 197
           GI     ++ +   + ++  ++   +L+IEQ ++  E+   V+G+   + T     V   
Sbjct: 191 GISKCNNEKELKSGIEEAFQFDR--KLVIEQGIEAREIEVAVLGNDYPETTWPGEVVKDV 248

Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
            FY Y+ KY        +PA++  D+   ++ +A  A +A  C G+ R+DF       ++
Sbjct: 249 AFYDYKSKYKDGKVRLQIPAELDQDVQMTLRNMALEAFKATDCSGLVRADFFVTE-DNQI 307

Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +  E N  PG T  S++P +    G S+ +L+  +++ A
Sbjct: 308 YINETNAMPGFTSFSMYPSLWENMGLSYPDLIAKLIDLA 346


>gi|225857287|ref|YP_002738798.1| D-alanyl-alanine synthetase A [Streptococcus pneumoniae P1031]
 gi|254767743|sp|C1CM10|DDL_STRZP RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|225724581|gb|ACO20433.1| D-alanine--D-alanine ligase (D-alanylalanine
           synthetase)(D-Ala-D-Ala ligase) [Streptococcus
           pneumoniae P1031]
          Length = 347

 Score =  304 bits (779), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 99/334 (29%), Positives = 161/334 (48%), Gaps = 41/334 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKV--------------------------- 33
           + +L GG S+EREVS+ S ++   A+    F V                           
Sbjct: 5   IILLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDFIKTQEFSHAPGQEDRL 64

Query: 34  ---SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
                ID D+ V     + +  + F VLHG  GEDG VQ  LE+L++PY    IL+S+L+
Sbjct: 65  MTNETIDWDKKVAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLA 124

Query: 91  MDKMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
           MDK+ +K+V+ S G+   P +       V     + +  ++ P   KP   GSS+GI   
Sbjct: 125 MDKITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLAYPVFAKPSNMGSSVGISKS 184

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202
           +  + +   L    ++ +  ++L+EQ V+  E+  G++G+  +  T     V    FY Y
Sbjct: 185 ENQEELRQALKL--AFRYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDY 242

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
           + KY     T  +PAKI  D+   +++ A  A +AIG  G+SR DF +     ++F  E+
Sbjct: 243 DAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDFFYTDK-GEIFLNEL 301

Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           N  PG T  S++P +    G S+ EL+  +V+ A
Sbjct: 302 NTMPGFTQWSMYPLLWDNMGISYPELIERLVDLA 335


>gi|238918680|ref|YP_002932194.1| D-alanine--D-alanine ligase B [Edwardsiella ictaluri 93-146]
 gi|238868248|gb|ACR67959.1| D-alanine--D-alanine ligase B [Edwardsiella ictaluri 93-146]
          Length = 300

 Score =  304 bits (779), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 101/305 (33%), Positives = 161/305 (52%), Gaps = 19/305 (6%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+ER+VSL SG+A  + L+ AG      D  R     L     +  F  L+G
Sbjct: 5   VAVLLGGTSAERDVSLLSGQAVLNGLKQAGIDAYPADTRRFPATQLREAGFERVFIALYG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119
                G +Q +LE L++PYT S ++ASAL+MDK+RSKQV  + G+PV P + ++R   D 
Sbjct: 65  R----GSLQGVLEFLQLPYTGSDVMASALTMDKLRSKQVWQAAGLPVVPYVAISREQFDE 120

Query: 120 --------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                     + +  P ++KP + GSS+G+  + +       L+++    H D++LIE++
Sbjct: 121 GLTMDTLHEINDLGLPLIVKPSREGSSVGMSKVSEPCEFDPALVEAL--RHDDEILIEKW 178

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T   +GD       I +  + FY YE+KY S  + +  P+ +  +  + +  L 
Sbjct: 179 LSGPEYTVAFIGDEIFPSIRIQMADA-FYDYEVKYLSDKAEYFCPSGLSDEQEQALVALV 237

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A++A+GC G  R D + D    +   LE N  PG    S+ P  A  AG SF  L++ 
Sbjct: 238 RRAYKALGCSGWGRVDVIQDTS-GEFCLLEANTAPG--SHSLTPMAACQAGMSFSPLVVR 294

Query: 292 MVEDA 296
           ++E A
Sbjct: 295 ILELA 299


>gi|83648822|ref|YP_437257.1| D-alanine-D-alanine ligase-like protein [Hahella chejuensis KCTC
           2396]
 gi|83636865|gb|ABC32832.1| D-alanine-D-alanine ligase and related ATP-grasp enzyme [Hahella
           chejuensis KCTC 2396]
          Length = 331

 Score =  304 bits (779), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 100/331 (30%), Positives = 157/331 (47%), Gaps = 39/331 (11%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50
           +AVL GG S ER+VS++S      AL   G +V  +D           ++          
Sbjct: 3   IAVLFGGTSEERDVSIASAAQIIPALRSLGHEVFSVDTATGQLSGTDEMRLLQAGVAPEP 62

Query: 51  -------------------------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
                                     D+ F  LHG  GEDG +QA+L+L  + YT S  +
Sbjct: 63  PSTSVIADVRGRAIALSAEAFNIRDVDVVFLALHGGAGEDGRIQAMLDLAGLAYTGSNHI 122

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145
           ASA++MDK  SKQ+  + GVP    ++    + +    +  P V+KP K GS++G+ V++
Sbjct: 123 ASAVAMDKDLSKQLFRAAGVPTPDWLMAPASSDEVAQKLGWPVVVKPSKQGSTVGLSVVR 182

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205
           +   +   +    + N+ D+++IE+++ G E T G++   +L V EI VP ++ + Y  K
Sbjct: 183 EASELAKAI--ELAMNYDDEVMIEKFIPGREFTVGILDGRALLVGEIIVP-NEIFDYHAK 239

Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           Y    ++ + PA I       +Q +A  AH A+     SR DF     +  V+ LE N  
Sbjct: 240 YQVGAASEIFPANISETDAAAMQEIALRAHAALKLGVYSRIDFRV-EDNGAVWCLEGNSL 298

Query: 266 PGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           PGMT  S+ P+ A  AG  F ELL  +   A
Sbjct: 299 PGMTANSLLPQAARAAGIEFPELLERICRGA 329


>gi|297171287|gb|ADI22293.1| D-alanine-D-alanine ligase and related ATP-grasp enzymes
           [uncultured actinobacterium HF0200_46I24]
          Length = 364

 Score =  304 bits (779), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 91/343 (26%), Positives = 157/343 (45%), Gaps = 54/343 (15%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR---------------------- 40
           +L GG S+E EVS+ S ++  +A++   + V    +D+                      
Sbjct: 8   LLFGGRSAEHEVSVVSARSVYAAIDSYRYDVVLAGIDQQGRWYFGGKNSESLLSTSTVVP 67

Query: 41  -----------------SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                              G  L   + ++ F +LHG +GEDG +Q +LEL  + Y  +G
Sbjct: 68  DEQLPARLSTAGTNLVSENGDDLPDSEFEVVFPLLHGPYGEDGTIQGLLELAGLAYVGAG 127

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLK 134
           + ASA+ MDK+ ++ + ++ G+P     ++ R              +     P  +KP  
Sbjct: 128 VSASAVGMDKVLARAIFAASGLPQTQYSVIMRSEWRREQAPVLERLEEEHDYPLFVKPAN 187

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIA 193
            GSS+GI  +   Q +   L  +S +    +L+IE+ V+   EL C ++G+     + + 
Sbjct: 188 LGSSVGISKVHDRQGLHAALELASRF--DTKLIIERSVENARELECAILGNDYPKASGVG 245

Query: 194 --VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
             +P  +FY Y  KY    S  V+PA +     + VQ LA  A +AI C G++R D    
Sbjct: 246 EIIPGGEFYDYTTKYIDERSQLVIPAVLEKSESEAVQELAIRAFKAIDCSGLARVDCFM- 304

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
                V   EIN  PG TP+S++P++ A AG  + +L+  +++
Sbjct: 305 CSDGSVLVNEINTMPGFTPISMYPKLWAAAGIDYGDLIDRLIQ 347


>gi|263418597|sp|P0CB57|DDL_STRPN RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
          Length = 347

 Score =  304 bits (779), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 98/334 (29%), Positives = 162/334 (48%), Gaps = 41/334 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKV--------------------------- 33
           + +L GG S+EREVS+ S ++   A++   F V                           
Sbjct: 5   IILLYGGRSAEREVSVLSAESVMRAVDYDRFTVKTFFISQSGDFIKTQEFSHAPGQEDRL 64

Query: 34  ---SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
                ID D+ V     + +  + F VLHG  GEDG VQ  LE+L++PY    IL+S+L+
Sbjct: 65  MTNETIDWDKKVAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLA 124

Query: 91  MDKMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
           MDK+ +K+V+ S G+   P +       V     + +  ++ P   KP   GSS+GI   
Sbjct: 125 MDKITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLAYPVFTKPSNMGSSVGISKS 184

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202
           +  + +   L    ++ +  ++L+EQ V+  E+  G++G+  +  T     V    FY Y
Sbjct: 185 ENQEELRQALKL--AFRYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDY 242

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
           + KY     T  +PAKI  D+   +++ A  A +AIG  G+SR DF +     ++F  E+
Sbjct: 243 DAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDFFYTDK-GEIFLNEL 301

Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           N  PG T  S++P +    G S+ +L+  +V+ A
Sbjct: 302 NTMPGFTQWSMYPLLWDNMGISYPKLIERLVDLA 335


>gi|260434898|ref|ZP_05788868.1| D-alanine--D-alanine ligase [Synechococcus sp. WH 8109]
 gi|260412772|gb|EEX06068.1| D-alanine--D-alanine ligase [Synechococcus sp. WH 8109]
          Length = 350

 Score =  304 bits (779), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 91/343 (26%), Positives = 161/343 (46%), Gaps = 49/343 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALE----DAGFKVSQIDVDRSVGLVLAHLK------ 50
           + ++ GG S E  VS+ S       L        + V  I +D         L       
Sbjct: 8   IGLVFGGRSGEHNVSIRSAATVVRGLRSGQNRKRYTVQPIYIDLEGRWWGTDLSEATLSS 67

Query: 51  ------------------------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
                                    DL + VLHG  GEDG +Q + +L   P+  +G+L 
Sbjct: 68  ETAPELNPPLPPSGFQGFPKGCDAVDLWYPVLHGPNGEDGTIQGLFQLTGKPFVGAGVLG 127

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-----------QHLISPPYVIKPLKG 135
           SA+SMDK+  K   +S G+   P + ++   +++           +  ++ PY +KP   
Sbjct: 128 SAVSMDKLAMKSAFASAGLSQVPYVALHASELENAISRSALLDRIERELNYPYFVKPANL 187

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195
           GSS+GI  ++  + +   L Q+++     +L++EQ V+  E+ C V+G   L+ + I   
Sbjct: 188 GSSVGISKVRSRKELEAGLDQAAAL--DPRLVVEQGVNAREVECAVLGGRMLEASLIGEV 245

Query: 196 --KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
              +D+Y YE KY++  ST ++PA +P ++   ++  A  A  A+G  G+ R DF +D  
Sbjct: 246 RFDADWYDYETKYTAGRSTTLIPAPLPDEVADRIRAQALQACAAVGVNGMGRVDFFYDDA 305

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           + +++  EIN  PG T  S+FP + A +G +  +L+  +++ A
Sbjct: 306 NDQLWINEINTLPGFTAQSMFPMLWAASGVTVEQLVHKLIQTA 348


>gi|168486961|ref|ZP_02711469.1| D-alanine--D-alanine ligase (D-alanylalanine
           synthetase)(D-Ala-D-Ala ligase) [Streptococcus
           pneumoniae CDC1087-00]
 gi|183570100|gb|EDT90628.1| D-alanine--D-alanine ligase (D-alanylalanine
           synthetase)(D-Ala-D-Ala ligase) [Streptococcus
           pneumoniae CDC1087-00]
          Length = 347

 Score =  304 bits (779), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 98/334 (29%), Positives = 162/334 (48%), Gaps = 41/334 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKV--------------------------- 33
           + +L GG S+EREVS+ S ++   A++   F V                           
Sbjct: 5   IILLYGGRSAEREVSVLSAESVMRAVDYDRFTVKTFFISQSGDFIKTQEFSHAPGQEDRL 64

Query: 34  ---SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
                ID D+ V     + +  + F VLHG  GEDG VQ  LE+L++PY    IL+S+L+
Sbjct: 65  MTNETIDWDKKVAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLA 124

Query: 91  MDKMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
           MDK+ +K+V+ S G+   P +       V     + +  ++ P   KP   GSS+GI   
Sbjct: 125 MDKITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLAYPVFTKPSNMGSSVGISKS 184

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202
           +  + +   L    ++ +  ++L+EQ V+  E+  G++G+  +  T     V    FY Y
Sbjct: 185 ENQEELRQAL--ELAFRYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDY 242

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
           + KY     T  +PAKI  D+   +++ A  A +AIG  G+SR DF +     ++F  E+
Sbjct: 243 DAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDFFYTDK-GEIFLNEL 301

Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           N  PG T  S++P +    G S+ +L+  +V+ A
Sbjct: 302 NTMPGFTQWSMYPLLWDNMGISYPKLIERLVDLA 335


>gi|189499957|ref|YP_001959427.1| D-alanyl-alanine synthetase A [Chlorobium phaeobacteroides BS1]
 gi|229463740|sp|B3EQ14|DDL_CHLPB RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|189495398|gb|ACE03946.1| D-alanine/D-alanine ligase [Chlorobium phaeobacteroides BS1]
          Length = 360

 Score =  304 bits (779), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 92/351 (26%), Positives = 155/351 (44%), Gaps = 57/351 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           +A+L GG SSE E+S+ S KA ++ ++   + +  + + R                    
Sbjct: 6   VALLFGGKSSEHEISIISAKAVSAHIDRTTYTLFPLYISRDGRWFKGRTARKVLDLDITG 65

Query: 46  -----------------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLE 76
                                              ++AF VLHG +GEDG +Q +LE+  
Sbjct: 66  LLKSRTIETTNRQLLAMTENRDEDLFDFNFQKEGIEVAFPVLHGAYGEDGKIQGLLEVFA 125

Query: 77  IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT---------MDSQHLISPP 127
           IPYT   + +S+++MDK  +K      G+ V   + V R              +   +PP
Sbjct: 126 IPYTGCNVQSSSMTMDKEITKLCAVQAGIHVADYMTVLRPDYLNNRSAIAETIKKRFAPP 185

Query: 128 YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL 187
           + +KP   GSS+GI  I     +   L ++       ++L+E+ ++G E+   V+G+   
Sbjct: 186 FFVKPANLGSSVGIAKIHSFDELENALDEACRL--DVKILVEKAIEGREVEVAVLGNEHP 243

Query: 188 --DVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
              V     P  DFY +  KY   ++   +PA++  D    +Q     A +A+GC G+SR
Sbjct: 244 IASVPGEIEPGGDFYDFTDKYIDGSARLHIPARVDADTSARLQEEGIKAFRALGCSGMSR 303

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            DF  +  S ++   EIN  PG T +S++P +  +AG  F EL+  +V  A
Sbjct: 304 IDFFVEKGSGRIILNEINSIPGFTSISMYPMLMEHAGIGFTELIDRLVRFA 354


>gi|257870941|ref|ZP_05650594.1| D-alanine:D-alanine ligase [Enterococcus gallinarum EG2]
 gi|24711813|gb|AAN62561.1| D-alanine:D-alanine ligase [Enterococcus gallinarum]
 gi|62632241|gb|AAX89143.1| D-alanine:D-alanine ligase [Enterococcus gallinarum]
 gi|62632243|gb|AAX89144.1| D-alanine:D-alanine ligase [Enterococcus gallinarum]
 gi|257805105|gb|EEV33927.1| D-alanine:D-alanine ligase [Enterococcus gallinarum EG2]
          Length = 351

 Score =  304 bits (779), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 82/335 (24%), Positives = 148/335 (44%), Gaps = 44/335 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           + +L GG S+E +VSL S  +  +A+    ++V  + + R    +               
Sbjct: 3   IILLYGGRSAEHDVSLLSAFSVVNAVYYNYYQVQLVMITRDGQWLKGSLLTEAPTSKEVL 62

Query: 46  ---------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
                              +  + F +LHG  GEDG +Q  LE + +PY  +G+L SA  
Sbjct: 63  NLTDSAYQGTPIQPGEIKEEDAIVFPLLHGPNGEDGTIQGFLETIGMPYVGAGVLTSACG 122

Query: 91  MDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSLGI 141
           MDK+ +K ++ + G+P  P + V +              +  +  P  IKP   GSS+GI
Sbjct: 123 MDKIMTKYILQAAGIPQVPYVPVLKNYWKENPKKVFEQCEGSLLYPMFIKPANMGSSVGI 182

Query: 142 IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA--VPKSDF 199
              +  + +   L +  ++ +  + ++EQ ++  E+   V+G+  +  T     V    F
Sbjct: 183 TKAENREELQNALQE--AYRYDTRAIVEQGIEAREIEVAVLGNEDVRTTMPGEIVKDVAF 240

Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
           Y Y  KY        +PA+IP +   + Q  A  A+  +G  G+SR DF       ++F 
Sbjct: 241 YDYNSKYLDNKIEMQIPAQIPEETQAKAQEFAKKAYTMLGGSGLSRCDFFLTNK-NELFL 299

Query: 260 LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            E+N  PG T  S++P +    G  + +L+  +++
Sbjct: 300 NELNTMPGFTEFSMYPLLWEKTGLPYGDLIEELIQ 334


>gi|168207650|ref|ZP_02633655.1| D-alanine--D-alanine ligase [Clostridium perfringens E str.
           JGS1987]
 gi|168211769|ref|ZP_02637394.1| D-alanine--D-alanine ligase [Clostridium perfringens B str. ATCC
           3626]
 gi|170661018|gb|EDT13701.1| D-alanine--D-alanine ligase [Clostridium perfringens E str.
           JGS1987]
 gi|170710279|gb|EDT22461.1| D-alanine--D-alanine ligase [Clostridium perfringens B str. ATCC
           3626]
          Length = 301

 Score =  304 bits (779), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 94/299 (31%), Positives = 162/299 (54%), Gaps = 9/299 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGGISSERE+S+ SG +   AL+   ++   I ++    L+      D A   LHG
Sbjct: 3   VGVIMGGISSEREISIQSGNSVVHALDKDKYEAIPIVLNEKEDLIEKVKGIDFALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL---VNRFT 117
            FGEDG VQ++L+ L IP++  G L+SA+ MDK  +K++++   V     ++   V+   
Sbjct: 63  KFGEDGTVQSVLKTLGIPFSGCGPLSSAICMDKDMTKRILAFGNVRTARWVMVSSVDEID 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            +    +  P  IKP  GGSS+   +++  +++   +L++    +  +++IE+Y+ G E+
Sbjct: 123 YEKIENLGYPVFIKPNNGGSSVATTLVESKEAVKDAVLEAL--KYDTEVMIEEYIKGDEI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC ++    L V  I  PK  F+    KY    +   +  ++  D++KEV+++A   ++ 
Sbjct: 181 TCPIIDGKMLPVLAIK-PKGKFFDIASKYEDGGADEFI-VELNEDLHKEVEKMALETYKL 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           + C   +R D L        + LE+N  PGMT  S+FP+ AA    SF ELL  ++E +
Sbjct: 239 LKCDVYARVDMLV--KDNIPYVLEVNTLPGMTKNSLFPKSAAGINMSFEELLDTIIEKS 295


>gi|58584827|ref|YP_198400.1| D-alanine-D-alanine ligase [Wolbachia endosymbiont strain TRS of
           Brugia malayi]
 gi|81311624|sp|Q5GS66|DDL_WOLTR RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|58419143|gb|AAW71158.1| D-alanine-D-alanine ligase [Wolbachia endosymbiont strain TRS of
           Brugia malayi]
          Length = 339

 Score =  304 bits (779), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 115/312 (36%), Positives = 178/312 (57%), Gaps = 17/312 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + +L GG S ER++SL SGKA   AL+   +   +IDV+ +    L  + PDLAF  LHG
Sbjct: 19  ITILSGGFSRERKISLMSGKAVKKALDSLSYNAIEIDVNSNTAEKLKKINPDLAFIALHG 78

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG +Q +LE+L I YTHSG++ASA++M+K  SK +  S G+      +++R  +  
Sbjct: 79  PYGEDGCIQGLLEILGIKYTHSGVMASAIAMNKAMSKHIFRSLGIDTPKGYIISRGDILK 138

Query: 121 QHL-ISPPYVIKPLKGGSSLGIIVIKKDQSI-------------PLDLLQSSS-WNHGDQ 165
            ++ I  PYV+KP+  GSS+G+ +    +                  + +    W   D 
Sbjct: 139 NNIKIDYPYVLKPINEGSSIGVHITFSHEDYLKLKNMFSVIPVHDAGIEEEEPVWITRDL 198

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
           ++IE+Y+ GIEL   V+ D +    EI  PK+ FY Y+ KY++  + H+ PA+IP +IY+
Sbjct: 199 MIIEEYIPGIELHTAVLLDEAAGTMEIR-PKNKFYDYKAKYTNGFAEHIFPAEIPDNIYE 257

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYA-GYS 284
                A   H+ +GC+ ISRSDF ++P    +  LEIN  PG T +S+ PE+A    G  
Sbjct: 258 MTLEHALKVHRFLGCKTISRSDFRYNPKDNTLKMLEINTHPGFTELSLVPEIAKLTKGID 317

Query: 285 FRELLLWMVEDA 296
           F EL+  ++ED+
Sbjct: 318 FNELVKIIIEDS 329


>gi|304386681|ref|ZP_07368962.1| D-alanine-D-alanine ligase B [Neisseria meningitidis ATCC 13091]
 gi|304339234|gb|EFM05313.1| D-alanine-D-alanine ligase B [Neisseria meningitidis ATCC 13091]
          Length = 343

 Score =  304 bits (779), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 105/299 (35%), Positives = 157/299 (52%), Gaps = 7/299 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSERE+SL SG A  +AL+  G      D   +    L       AFN+LHG
Sbjct: 46  VAVLMGGFSSEREISLDSGTAILNALKSKGIDAYAFDPKETPLSELKAQGFQTAFNILHG 105

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--M 118
            +GEDG VQ  LELL IPYT SG+ ASA+ MDK R K +  + G+PV    +++  T   
Sbjct: 106 TYGEDGAVQGALELLGIPYTGSGVAASAIGMDKYRCKLIWQALGLPVPEFAVLHDDTDFD 165

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
             +  +  P  +KP   GSS+G++ +K    +    +     +   +++ E+++ G E +
Sbjct: 166 AVEEKLGLPMFVKPAAEGSSVGVVKVKGKGRLKS--VYEELKHLQGEIIAERFIGGGEYS 223

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQA 237
           C V+    L    I +P ++FY YE KY+  ++ +  P   +       ++ LA    QA
Sbjct: 224 CPVLNGKGLPGIHI-IPATEFYDYEAKYNRDDTIYQCPSEDLTEAEESLMRELAVRGAQA 282

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           IG  G  R DF       K++ LEIN  PGMT  S+ P+ AA  G  F +L + +++ A
Sbjct: 283 IGAEGCVRVDF-LKDTDGKLYLLEINTLPGMTSHSLVPKSAAVTGVGFADLCIEILKTA 340


>gi|315613579|ref|ZP_07888486.1| D-alanine-D-alanine ligase [Streptococcus sanguinis ATCC 49296]
 gi|315314270|gb|EFU62315.1| D-alanine-D-alanine ligase [Streptococcus sanguinis ATCC 49296]
          Length = 347

 Score =  304 bits (779), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 97/334 (29%), Positives = 160/334 (47%), Gaps = 41/334 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQ------------------------- 35
           + +L GG S+EREVS+ S ++   A+    F V                           
Sbjct: 5   IILLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDFIKTQEFSQTPGQEDRL 64

Query: 36  -----IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
                ID D+ +     + +  + F VLHG  GEDG VQ  LE+L++PY    IL+S+L+
Sbjct: 65  MTNATIDWDKKIAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLA 124

Query: 91  MDKMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
           MDK+ +K+V+ S G+   P +       V     + +  ++ P   KP   GSS+GI   
Sbjct: 125 MDKITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLTYPVFTKPSNMGSSVGISKS 184

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202
           +  + +   L    ++ +  ++L+EQ V+  E+  G++G+  +  T     V    FY Y
Sbjct: 185 ENQEELRQAL--ELAFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDY 242

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
           + KY     T  +PAKI  D+   ++  A  A +AIG  G+SR DF +     ++F  E+
Sbjct: 243 DAKYIDNKITMDIPAKISDDVVAVMRHNAETAFRAIGGLGLSRCDFFYTDK-GEIFLNEL 301

Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           N  PG T  S++P +    G S+ +L+  +V+ A
Sbjct: 302 NTMPGFTQWSMYPLLWDNMGISYPDLIEHLVDLA 335


>gi|110798856|ref|YP_695965.1| D-alanine--D-alanine ligase [Clostridium perfringens ATCC 13124]
 gi|110673503|gb|ABG82490.1| D-alanine--D-alanine ligase [Clostridium perfringens ATCC 13124]
          Length = 301

 Score =  304 bits (779), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 95/299 (31%), Positives = 162/299 (54%), Gaps = 9/299 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGGISSERE+S+ SG +   AL+   ++   I ++    L+      D A   LHG
Sbjct: 3   VGVIMGGISSEREISIQSGNSVVHALDKDKYEAIPIVLNEKEDLIEKVKGIDFALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL---VNRFT 117
            FGEDG VQ++L+ L IP++  G L+SA+ MDK  +K++++   V     ++   V+   
Sbjct: 63  KFGEDGTVQSVLKTLGIPFSGCGPLSSAICMDKDMTKRILAFGNVRTARWVMVSSVDEID 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            +    +  P  IKP  GGSS+   +++  +++   +L++    +  +++IE+Y+ G E+
Sbjct: 123 YEKIENLGYPVFIKPNNGGSSVATTLVESKEAVKDAVLEAL--KYDTEVMIEEYIKGDEI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC ++    L V  I  PK  F+    KY    +   +  K+  D++KEV+++A   ++ 
Sbjct: 181 TCPIIDGKMLPVLAIK-PKGKFFDIASKYEDGGADEFI-VKLNEDLHKEVEKMALETYKL 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           + C   +R D L        + LE+N  PGMT  S+FP+ AA    SF ELL  ++E +
Sbjct: 239 LKCDVYARVDMLV--KDNIPYVLEVNTLPGMTKNSLFPKSAAGINMSFEELLDTIIEKS 295


>gi|226330096|ref|ZP_03805614.1| hypothetical protein PROPEN_04009 [Proteus penneri ATCC 35198]
 gi|225200891|gb|EEG83245.1| hypothetical protein PROPEN_04009 [Proteus penneri ATCC 35198]
          Length = 366

 Score =  303 bits (778), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 85/348 (24%), Positives = 159/348 (45%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP- 51
           +A++ GG S+E +VSL S K   + L+   F +  I ++             +L    P 
Sbjct: 6   VAIIFGGKSTEHQVSLQSAKNIINELDRTKFDLCLIGINEQGQWHEYSETDYLLNSDNPK 65

Query: 52  ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
                                             D+ F ++HG +GEDG +Q +L ++++
Sbjct: 66  TISLSKPLRAVAIIPGSVKKQFISLEDGQALPQIDVVFPIVHGAYGEDGTLQGLLHMIDM 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH------LISPPYVIK 131
           PY    I++SA  MDK  +K+++   G+ V P I +    ++  H       +  P  IK
Sbjct: 126 PYVGPNIMSSAACMDKDITKRLLDGAGLAVAPFITIMAHQINDIHYNEMVRQLGLPLFIK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+GI  +  ++     L    ++ +  ++++E  + G E+ C V+G+   +V+ 
Sbjct: 186 PANLGSSVGISKVNNEEEFNAAL--EMAFEYDLKVIVESAIVGREIECAVLGNEDPEVSP 243

Query: 192 IA--VPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               V    FY+Y  KY     +  V+PA +  +    ++++A  A++ + C G++R D 
Sbjct: 244 CGEIVLNDAFYAYNTKYIDEDGAKVVVPAVMDENTSLHIRQVALKAYRVLNCLGMARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                  +V   EIN  PG T +S++P++   AG  ++ L+  ++E A
Sbjct: 304 FLT-QDNRVVINEINTLPGFTNISMYPKLWQSAGLGYQSLITKLIELA 350


>gi|320530969|ref|ZP_08032002.1| UDP-N-acetylmuramate--alanine ligase [Selenomonas artemidis F0399]
 gi|320136834|gb|EFW28783.1| UDP-N-acetylmuramate--alanine ligase [Selenomonas artemidis F0399]
          Length = 779

 Score =  303 bits (778), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 106/311 (34%), Positives = 171/311 (54%), Gaps = 15/311 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-SVGLVLAHLKPDLAFNVLH 59
           + V+MGG S+E EVS  SG A   AL +  +    I+++  +    +  L+P L FN LH
Sbjct: 473 ITVVMGGPSTEAEVSRRSGAAILHALHEKNYPAVGIELNPATFAEEIKKLRPALVFNALH 532

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN----- 114
           G +GEDG++Q  L++L IPYT SG+ A+AL+MDK  +K++ ++ G+              
Sbjct: 533 GKYGEDGVLQGTLDMLGIPYTGSGVRAAALTMDKTSAKRIFAAEGIATPRFRSFYAGTDT 592

Query: 115 -RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
            +   +     S P V+K  + GSS+G+ ++ ++  +   L +  ++++G ++L+E+++ 
Sbjct: 593 GKIAEEILAAFSLPVVVKAPEQGSSIGVYIVTEEDDLRSSLDE--AFSYGGEVLVEEFIA 650

Query: 174 GIELTCGVMGD----ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           G ELT  V G+     +L V EI    S  Y YE KY+   S H++PA I  +   EVQ 
Sbjct: 651 GRELTVVVWGETGHAEALPVIEITT-TSGRYDYESKYTPGASAHLVPAPISPECTAEVQE 709

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           LA  A  A GC G++R D +    + K + +E+N  PGMT  S+ P+ A   G SF +L 
Sbjct: 710 LAVRAFNACGCTGVARLDVMLSE-TEKPYAIEVNSVPGMTETSLVPDAARAVGLSFPDLC 768

Query: 290 LWMVEDASCLR 300
             ++E A   R
Sbjct: 769 EKILEMAGYQR 779


>gi|307127881|ref|YP_003879912.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae 670-6B]
 gi|6634574|emb|CAB64471.1| D-ala,D-ala ligase [Streptococcus pneumoniae]
 gi|306484943|gb|ADM91812.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae 670-6B]
          Length = 347

 Score =  303 bits (778), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 99/334 (29%), Positives = 161/334 (48%), Gaps = 41/334 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQ------------------------- 35
           + +L GG S+EREVS+ S ++   A+    F V                           
Sbjct: 5   IILLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDFIKTQEFSQTPGQEDRL 64

Query: 36  -----IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
                ID D+ V     + +  + F VLHG  GEDG VQ  LE+L++PY    IL+S+L+
Sbjct: 65  MTNATIDWDKKVAPSAIYEEEAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLA 124

Query: 91  MDKMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
           MDK+ +K+V+ S G+   P +       V     + +  ++ P   KP   GSS+GI   
Sbjct: 125 MDKITTKRVLESTGIAQVPYVAIVEGDDVTAKIAEVEEKLTYPVFTKPSNMGSSVGISKS 184

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202
           +  + +   L    ++ +  ++L+EQ V+  E+  G++G+  +  T     V    FY Y
Sbjct: 185 ENQEELRQALKL--AFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDY 242

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
           + KY     T  +PAKI  D+   +++ A  A +AIG  G+SR DF +     ++F  E+
Sbjct: 243 DAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDFFYTDK-GEIFLNEL 301

Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           N  PG T  S++P +    G S+ EL+  +V+ A
Sbjct: 302 NTMPGFTQWSMYPLLWDNMGISYPELIERLVDLA 335


>gi|118464178|ref|YP_883000.1| D-alanyl-alanine synthetase A [Mycobacterium avium 104]
 gi|189083043|sp|A0QJB2|DDL_MYCA1 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|118165465|gb|ABK66362.1| D-alanine--D-alanine ligase [Mycobacterium avium 104]
          Length = 369

 Score =  303 bits (778), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 97/360 (26%), Positives = 158/360 (43%), Gaps = 65/360 (18%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +AV+ GG S+E  +S  S  +    L+   F+V  I +      VL    P         
Sbjct: 9   VAVVFGGRSNEHAISCVSAGSILRNLDPRRFEVVAIGITPQGSWVLTDGDPAALAISDRQ 68

Query: 52  --------------------------------------DLAFNVLHGNFGEDGLVQAILE 73
                                                 D+ F VLHG +GEDG +Q +LE
Sbjct: 69  LPEVTSASGTELALPADPGRSGQLVSLPPGASEVLASVDVVFPVLHGPYGEDGTIQGLLE 128

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT----MDSQHLISPPYV 129
           L  +PY  +G+ ASA  MDK  +K++ ++ G+P+    ++        +  +  +  P  
Sbjct: 129 LAGVPYVGAGVFASAAGMDKEFTKKLFAAEGLPIGDYAVLRPSQSTLSLQDRERLGLPVF 188

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD----- 184
           +KP +GGSS+G+  +     +  D   +++ +H  ++++E  + G EL CGV+       
Sbjct: 189 VKPARGGSSIGVSRVSSWDEL--DAAVAAARDHDPKVIVEAAIAGRELECGVLEMPDGTV 246

Query: 185 ASLDVTEIAVP-----KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
            +  V EI V      +  FY +  KY    +   +PAK+  +I   V+ LA  A +A+ 
Sbjct: 247 QASTVGEIRVAGVRGREDSFYDFATKYLDDTAELDVPAKVDDEIADAVRELAIRAFKAVD 306

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
           C+G++R DF            EIN  PG T +S++P M A +G  +  LL  MVE A   
Sbjct: 307 CQGLARVDFFLTETG--PVLNEINTMPGFTTISMYPRMWAASGVDYPSLLATMVETALTR 364


>gi|239982537|ref|ZP_04705061.1| D-alanyl-alanine synthetase A [Streptomyces albus J1074]
 gi|291454379|ref|ZP_06593769.1| D-alanyl-alanine synthetase A [Streptomyces albus J1074]
 gi|291357328|gb|EFE84230.1| D-alanyl-alanine synthetase A [Streptomyces albus J1074]
          Length = 390

 Score =  303 bits (778), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 106/363 (29%), Positives = 161/363 (44%), Gaps = 71/363 (19%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +AV+ GG SSE  +S+ +G A   +++ + + V  I +    G VL   +P         
Sbjct: 24  VAVVFGGRSSEHGISVVTGGAVLGSIDRSRYDVLPIGITTEGGWVLTADEPARMAITERT 83

Query: 52  -----------------------------------------DLAFNVLHGNFGEDGLVQA 70
                                                    D+ F VLHG +GEDG  Q 
Sbjct: 84  VPDVDALAEPGEGTVVLPVAPGNREVLYSEPGSVPKALGDVDVVFPVLHGPYGEDGTFQG 143

Query: 71  ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM------------ 118
           +LEL  IPY  SG+LASA+  DK   K+V +S G+PV P +++                 
Sbjct: 144 LLELAGIPYVGSGVLASAVGQDKEYMKRVFTSFGLPVGPYLVIRPREWDADEAAARARVI 203

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           D       P  +KP +GGSS+GI  +   +   LD   + +  H  ++L+E  + G E+ 
Sbjct: 204 DFAGEHGWPLFVKPARGGSSVGITKVDGPE--GLDAALAEARRHDPKVLVESLLRGREIE 261

Query: 179 CGVMG-----DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           CGV+       AS+      V   DFY +E KY   ++  ++PA +  +   EVQRLA  
Sbjct: 262 CGVLEFEDGPRASVPAEIPPVQAHDFYDFEAKY-IDSAPGLVPAPLTEEQTAEVQRLAVE 320

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           A +A  C G+ R+DF            EIN  PG TP+S++P M   +G  +  L+  +V
Sbjct: 321 AFEAASCEGLVRADFFLTE-DGGFVINEINTMPGFTPISMYPRMWQESGVDYPALVDQLV 379

Query: 294 EDA 296
           + A
Sbjct: 380 QAA 382


>gi|6634594|emb|CAB64487.1| D-ala,D-ala ligase [Streptococcus pneumoniae]
          Length = 347

 Score =  303 bits (778), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 98/334 (29%), Positives = 161/334 (48%), Gaps = 41/334 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQ------------------------- 35
           + +L GG S+EREVS+ S ++   A+    F V                           
Sbjct: 5   IILLYGGRSAEREVSVLSAESVMRAVNYNRFTVKTFFISQSGDFIKTQEFSQTPGQEDRL 64

Query: 36  -----IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
                ID D+ V     + +  + F VLHG  GEDG VQ  LE+L++PY    IL+S+L+
Sbjct: 65  MTNATIDWDKQVVPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLA 124

Query: 91  MDKMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
           MDK+ +K+V+ S G+   P +       V     + +  ++ P   KP   GSS+GI   
Sbjct: 125 MDKITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLAYPVFTKPSNMGSSVGISKS 184

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202
           +  + +   L    ++ +  ++L+EQ V+  E+  G++G+  +  T     V    FY Y
Sbjct: 185 ENQEELRQALKL--AFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDY 242

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
           + KY     T  +PAKI  D+   +++ A  A +AIG  G+SR DF +     ++F  E+
Sbjct: 243 DAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDFFYTDK-GEIFLNEL 301

Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           N  PG T  S++P +    G S+ +L+  +V+ A
Sbjct: 302 NTMPGFTQWSMYPLLWDNMGISYSDLIEHLVDLA 335


>gi|18310297|ref|NP_562231.1| D-alanine--D-alanine ligase [Clostridium perfringens str. 13]
 gi|39931176|sp|Q8XKS9|DDLA_CLOPE RecName: Full=D-alanine--D-alanine ligase A; AltName:
           Full=D-Ala-D-Ala ligase A; AltName: Full=D-alanylalanine
           synthetase A
 gi|18144977|dbj|BAB81021.1| D-alanine-D-alanine ligase [Clostridium perfringens str. 13]
          Length = 301

 Score =  303 bits (778), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 93/299 (31%), Positives = 161/299 (53%), Gaps = 9/299 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGGISSERE+S+ SG +   AL+   ++   I ++    L+      D A   LHG
Sbjct: 3   VGVIMGGISSEREISIQSGNSVVHALDKDKYEAIPIVLNEKEDLIEKVKGIDFALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL---VNRFT 117
            FGEDG VQ++L+ L IP++  G L+SA+ MDK  +K++++   V      +   V+   
Sbjct: 63  KFGEDGTVQSVLKTLGIPFSGCGPLSSAICMDKDMTKRILAFGNVRTARWEMVSSVDEID 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            +    +  P  +KP  GGSS+   +++  +++   +L++    +  +++IE+Y+ G E+
Sbjct: 123 YEKIENLGYPVFVKPNNGGSSVATTLVESKEAVKDAVLEAL--KYDTEVMIEEYIKGDEI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC ++    L V  I  PK  F+    KY    +   +  ++  D++KEV+++A   ++ 
Sbjct: 181 TCPIIDGKMLPVLAIK-PKGKFFDIASKYGDGGADEFI-VELNEDLHKEVEKMALETYKL 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           + C   +R D L        + LE+N  PGMT  S+FP+ AA    SF ELL  ++E +
Sbjct: 239 LKCDVYARVDMLV--KDNIPYVLEVNTLPGMTKNSLFPKSAAGINMSFEELLDTIIEKS 295


>gi|297191831|ref|ZP_06909229.1| D-alanine-D-alanine ligase [Streptomyces pristinaespiralis ATCC
           25486]
 gi|197722023|gb|EDY65931.1| D-alanine-D-alanine ligase [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 385

 Score =  303 bits (778), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 104/366 (28%), Positives = 157/366 (42%), Gaps = 71/366 (19%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +AV+ GG SSE  +S+ +  A   A++   + V  I +       L   +P         
Sbjct: 19  VAVVFGGRSSEHGISVVTAGAVLRAIDRTKYDVLPIGITADGRWALTADEPERMAITDRR 78

Query: 52  -----------------------------------------DLAFNVLHGNFGEDGLVQA 70
                                                    D  F +LHG +GEDG +Q 
Sbjct: 79  TPNVEELAESDEGGVVLSVDPGSREVVYSEPGSVPKALGEVDAVFPMLHGPYGEDGTLQG 138

Query: 71  ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM------------ 118
           +LEL  +PY  SG+LASA+  DK   K+V  S G+PV P  ++                 
Sbjct: 139 LLELSGVPYVGSGVLASAVGQDKEYMKRVFVSFGLPVGPYEVIRPREWANDPAAARKKIV 198

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           D       P  IKP +GGSS+GI  +  D    LD   + +  H  ++L+E  + G E+ 
Sbjct: 199 DFAGEHGWPLFIKPARGGSSMGITKV--DDLAGLDDAIAEAQRHDPKILVESLLRGREIE 256

Query: 179 CGVMG-----DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           CGV+       AS+      V   DFY +E KY   ++  ++PA +  +   EVQRLA  
Sbjct: 257 CGVLEFEDGPRASVPAEIPPVTSHDFYDFEAKY-IDSAAGLVPAPLTDEQTAEVQRLAVA 315

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           A  A  C G+ R+DF       +    EIN  PG TP+S++P M   +G ++ EL+  ++
Sbjct: 316 AFDAASCEGLVRADFFLTE-DGEFVINEINTMPGFTPISMYPRMWQESGVAYTELVDRLI 374

Query: 294 EDASCL 299
           + A   
Sbjct: 375 QAALTR 380


>gi|157691220|ref|YP_001485682.1| D-alanyl-alanine synthetase A [Bacillus pumilus SAFR-032]
 gi|167012326|sp|A8FA55|DDL_BACP2 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|157679978|gb|ABV61122.1| D-alanine--D-alanine ligase [Bacillus pumilus SAFR-032]
          Length = 360

 Score =  303 bits (778), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 93/345 (26%), Positives = 154/345 (44%), Gaps = 52/345 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           + ++ GG S+E  VSL +  A   AL    F +  I +      +               
Sbjct: 5   LGLIYGGKSAEHNVSLQTALAVTKALNTEKFDIHPIYITEEGEWLRGEKLTEPVSNVRML 64

Query: 47  ------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
                                   A  K D+ F +LHG  GEDG +Q +LELL IPY  +
Sbjct: 65  QFEQNAKTFLPTSLNESMFPQPTSADEKIDVVFPLLHGPNGEDGTMQGLLELLNIPYVGN 124

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPL 133
           G+LASA  MDK+  K V +  G+     +  N+   +          + ++  P  +KP 
Sbjct: 125 GVLASAAGMDKVMMKDVFAQAGLAQAKHLSFNKKDYEKATPDSLEQVEQVLGYPCFVKPA 184

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--DVTE 191
             GSS+GI   +  + +        ++ +  ++++E+ V G E+  GV+G+      V  
Sbjct: 185 NMGSSVGISKCRSKEELQTAFDL--AFQYDRRVVVEEGVVGREIEIGVLGNDEPKCSVVG 242

Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
              PK+DFY Y+ KY   ++  ++PA +  D YK +  +A  A +++   G+ R+DF   
Sbjct: 243 EIAPKTDFYDYKAKYEDGDTDLIIPASVSEDEYKTIHDMAIKAFKSLDGSGLVRADFFLT 302

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
               +V   E+N  PG TP S+FP +  + G  + EL+  +V  A
Sbjct: 303 EK-GEVLINEVNTMPGFTPFSMFPLLWKHTGVEYPELIEKLVSLA 346


>gi|332199700|gb|EGJ13775.1| D-alanine--D-alanine ligase family protein [Streptococcus
           pneumoniae GA41317]
          Length = 347

 Score =  303 bits (778), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 98/334 (29%), Positives = 161/334 (48%), Gaps = 41/334 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKV--------------------------- 33
           + +L GG S+EREVS+ S ++   A+    F V                           
Sbjct: 5   IILLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDSIKTQEFSHAPGQEDRL 64

Query: 34  ---SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
                ID D+ V     + +  + F VLHG  GEDG VQ  LE+L++PY    IL+S+L+
Sbjct: 65  MTNETIDWDKKVAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLA 124

Query: 91  MDKMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
           MDK+ +K+V+ S G+   P +       V     + +  ++ P   KP   GSS+GI   
Sbjct: 125 MDKITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLAYPVFTKPSNMGSSVGISKS 184

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202
           +  + +   L    ++ +  ++L+EQ V+  E+  G++G+  +  T     V    FY Y
Sbjct: 185 ENQEELRQALKL--AFRYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDY 242

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
           + KY     T  +PAKI  D+   +++ A  A +AIG  G+SR DF +     ++F  E+
Sbjct: 243 DAKYIDNKVTMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDFFYTDK-GEIFLNEL 301

Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           N  PG T  S++P +    G S+ +L+  +V+ A
Sbjct: 302 NTMPGFTQWSMYPLLWDNMGISYPKLIERLVDLA 335


>gi|228965549|ref|ZP_04126631.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar sotto
           str. T04001]
 gi|228794142|gb|EEM41663.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar sotto
           str. T04001]
          Length = 304

 Score =  303 bits (778), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 88/303 (29%), Positives = 161/303 (53%), Gaps = 9/303 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGG+SSE++VS+ +G    + L+   +++  I ++  + L+      D A   LHG
Sbjct: 3   IGVIMGGVSSEKQVSIMTGNEMIAHLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117
            +GEDG VQ  LE L IPY+ S +L+S++ MDK  SK+++   GV     I + +     
Sbjct: 63  KYGEDGTVQGTLESLGIPYSGSNMLSSSICMDKNISKKILRYEGVETPDWIELTKMEDLK 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
           +D    +  P V+KP  GGSS+G+ ++     +    +  + +    +++IE+YV G E+
Sbjct: 123 LDELDKLGFPLVVKPNSGGSSVGVKIVYNKNELIS--MLETVFEWDSEVVIEKYVKGDEI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC ++    L +  I    ++F+ Y  KY   ++   +  ++P +I + V + +   ++ 
Sbjct: 181 TCSILDGKQLPIVSIR-HAAEFFDYNAKYDDTSTVEEV-IELPAEINERVNKASLACYKV 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           + C   +R D +        + +EIN  PGMT  S+ P+ A  AG S+ +LL  ++E + 
Sbjct: 239 LKCSVYARVDMMV--KDGIPYVMEINTLPGMTQSSLLPKSAEAAGISYSKLLDMIIETSL 296

Query: 298 CLR 300
            +R
Sbjct: 297 KVR 299


>gi|160944621|ref|ZP_02091848.1| hypothetical protein FAEPRAM212_02134 [Faecalibacterium prausnitzii
           M21/2]
 gi|158443805|gb|EDP20809.1| hypothetical protein FAEPRAM212_02134 [Faecalibacterium prausnitzii
           M21/2]
          Length = 364

 Score =  303 bits (778), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 89/349 (25%), Positives = 159/349 (45%), Gaps = 55/349 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           +A+L GG+SSE EVS  S       ++ + ++V  + + +    +               
Sbjct: 9   VALLFGGMSSEHEVSCVSVGNFVRNIDRSKYEVLTVGITKEGRWLYTEATAEQMADGSWE 68

Query: 46  ---------------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIP 78
                                      +  +  D+   VLHG +GEDG VQ +LEL  I 
Sbjct: 69  ELPGNMPCVISPDRADHGMILFTPDGRVEKMHLDVVIPVLHGLWGEDGTVQGLLELAGIA 128

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYV 129
           Y   G+LAS++ MDK  +  +  + GVP    +  NR+ ++          +  +  P  
Sbjct: 129 YVGCGVLASSVCMDKAVANALFEANGVPHTKWVAANRWEIEKDLEGVCAGVEQKLGWPVF 188

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           +KP   GSS+GI  +   + +   +  +    +  +++ E +VDG E+ C V+G      
Sbjct: 189 VKPANAGSSVGISKVSNQEELKAAIALAL--ENDRKVVFEAFVDGQEVECAVIGSDPAVA 246

Query: 190 TEIA--VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           T     +  ++FY+Y+ KY +  S  V+PA +P     EV+  A +A+ A+ C G++R D
Sbjct: 247 TRPGEILAGAEFYTYDDKYKNGVSQTVIPAHLPEAKLDEVKTYAAMAYTALNCEGLARCD 306

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           F  +  + +V   EIN  PG T +S++P++  + G    +L+  ++  A
Sbjct: 307 FFVEKNTGRVLINEINTFPGFTAISMYPKLMEHEGLPVPQLIDRLIALA 355


>gi|219849721|ref|YP_002464154.1| D-alanine/D-alanine ligase [Chloroflexus aggregans DSM 9485]
 gi|219543980|gb|ACL25718.1| D-alanine/D-alanine ligase [Chloroflexus aggregans DSM 9485]
          Length = 362

 Score =  303 bits (778), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 96/349 (27%), Positives = 161/349 (46%), Gaps = 52/349 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS------------------- 41
           +AV+ GG S E EVSL S  A  S L+   + +  + + +                    
Sbjct: 7   IAVIFGGQSGEHEVSLVSAHAVMSNLDPDRYHIEALGIGKDGRWWHGPGALAMLMAAADP 66

Query: 42  --------------------VGLVLAHLKP-DLAFNVLHGNFGEDGLVQAILELLEIPYT 80
                               VG     L P D+ F VLHG +GEDG +Q + EL   PY 
Sbjct: 67  ARLPASATMVAPGPVRELGRVGEPGWSLPPADVIFPVLHGPYGEDGTIQGLFELAGHPYV 126

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--------QHLISPPYVIKP 132
             G+ ASA+ MDK   K   ++  +P+ P +LV R  + +        +  +  P  +KP
Sbjct: 127 GCGVAASAVGMDKAFMKAAFAAADLPILPWVLVRRHELAALEMVCERIEATLHFPLFVKP 186

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192
              GSS+G+  ++    +   L +++   H  ++++EQ +   E+   V+G+  ++V+  
Sbjct: 187 ANLGSSVGVSKVRDRAELITGLHEAA--RHDRRIVVEQGISAREIEISVLGNEHVEVSIP 244

Query: 193 A--VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
              +P  ++Y Y  KY +  S  ++PA +      +VQ LA  A QAI   G++R DFL 
Sbjct: 245 GEIIPAGEWYDYHAKYIAGGSQTIVPAALTEMQIAQVQTLAKRAFQAIDGAGLARVDFLL 304

Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
           D     ++  E+N  PG TP+S++ +M   +G  + +LL  ++E A   
Sbjct: 305 DREQGTLWLNEVNTMPGFTPISMYAKMWEASGLPYPQLLDRLIELALAR 353


>gi|41409117|ref|NP_961953.1| D-alanyl-alanine synthetase A [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|254776254|ref|ZP_05217770.1| D-alanyl-alanine synthetase A [Mycobacterium avium subsp. avium
           ATCC 25291]
 gi|81413470|sp|Q73VJ4|DDL_MYCPA RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|41397937|gb|AAS05567.1| DdlA [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 369

 Score =  303 bits (778), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 97/360 (26%), Positives = 158/360 (43%), Gaps = 65/360 (18%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +AV+ GG S+E  +S  S  +    L+   F+V  I +      VL    P         
Sbjct: 9   VAVVFGGRSNEHAISCVSAGSILRNLDPRRFEVVAIGITPQGSWVLTDGDPAALAISDRQ 68

Query: 52  --------------------------------------DLAFNVLHGNFGEDGLVQAILE 73
                                                 D+ F VLHG +GEDG +Q +LE
Sbjct: 69  LPEVTSASGTELALPADPGRSGQLVSLPPGASEVLASVDVVFPVLHGPYGEDGTIQGLLE 128

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT----MDSQHLISPPYV 129
           L  +PY  +G+ ASA  MDK  +K++ ++ G+P+    ++        +  +  +  P  
Sbjct: 129 LAGVPYVGAGVFASAAGMDKEFTKKLFAAEGLPIGDYAVLRPSQSTLSLQDRERLGLPVF 188

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD----- 184
           +KP +GGSS+G+  +     +  D   +++ +H  ++++E  + G EL CGV+       
Sbjct: 189 VKPARGGSSIGVSRVSSWDEL--DAAVAAARDHDPKVIVEAAIAGRELECGVLEMPDGTV 246

Query: 185 ASLDVTEIAVP-----KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
            +  V EI V      +  FY +  KY    +   +PAK+  +I   V+ LA  A +A+ 
Sbjct: 247 QASTVGEIRVAGVRGREDSFYDFATKYLDDTAELDVPAKVDDEIADAVRELAIRAFKAVD 306

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
           C+G++R DF            EIN  PG T +S++P M A +G  +  LL  MVE A   
Sbjct: 307 CQGLARVDFFLTETG--PVLNEINTMPGFTTISMYPRMWAASGVDYPSLLATMVETALAR 364


>gi|168218188|ref|ZP_02643813.1| D-alanine--D-alanine ligase [Clostridium perfringens NCTC 8239]
 gi|182379801|gb|EDT77280.1| D-alanine--D-alanine ligase [Clostridium perfringens NCTC 8239]
          Length = 301

 Score =  303 bits (778), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 94/299 (31%), Positives = 162/299 (54%), Gaps = 9/299 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGGISSERE+S+ SG +   AL+   ++   I ++    L+      D A   LHG
Sbjct: 3   VGVIMGGISSEREISIQSGNSVVHALDKDKYEAIPIVLNEKEDLIEKVKGIDFALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL---VNRFT 117
            FGEDG VQ++L+ L IP++  G L+SA+ MDK  +K++++   V     ++   V+   
Sbjct: 63  KFGEDGTVQSVLKTLGIPFSGCGPLSSAICMDKDMTKRILAFGNVRTARWLMVSSVDEID 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            +    +  P  IKP  GGSS+   +++  +++   +L++    +  +++IE+Y+ G E+
Sbjct: 123 YEKIENLGYPVFIKPNNGGSSVATTLVESKEAVKDAVLEAL--KYDTEVMIEEYIKGDEI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC ++    L V  I  PK  F+    KY    +   +  ++  D++KEV+++A   ++ 
Sbjct: 181 TCPIIDGKMLPVLAIK-PKGKFFDIASKYEDGGADEFI-VELNEDLHKEVEKMALETYKL 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           + C   +R D L        + LE+N  PGMT  S+FP+ AA    SF ELL  ++E +
Sbjct: 239 LKCDVYARVDMLV--KDNIPYVLEVNTLPGMTKNSLFPKSAAGINMSFEELLDTIIEKS 295


>gi|54026176|ref|YP_120418.1| D-alanyl-alanine synthetase A [Nocardia farcinica IFM 10152]
 gi|81373693|sp|Q5YRY7|DDL_NOCFA RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|54017684|dbj|BAD59054.1| putative D-alanine-D-alanine ligase [Nocardia farcinica IFM 10152]
          Length = 363

 Score =  303 bits (778), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 100/356 (28%), Positives = 164/356 (46%), Gaps = 61/356 (17%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +AV+ GG S+E  VS  S  +    L+   ++   I +    G VLA+            
Sbjct: 7   VAVVFGGRSNEHAVSCVSAGSVLRHLDPTRYEAVPIGITPQGGWVLANSDVAAIGLSHEA 66

Query: 52  ------------------------------------DLAFNVLHGNFGEDGLVQAILELL 75
                                               D+ F +LHG FGEDG +Q +LEL 
Sbjct: 67  LPSVDAGGTALTLTADPTRGGELVALDDAGAVLGTVDVVFPILHGPFGEDGTLQGMLELA 126

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF----TMDSQHLISPPYVIK 131
            +PY   G+LASA  MDK  +K+++++ G+PV   +++       T + +  +  P  +K
Sbjct: 127 GVPYVGPGVLASAAGMDKEFTKKLLAAEGLPVGTQVVLRPGTATLTEEQRERLGLPVFVK 186

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG--DASLDV 189
           P + GSS+GI  +  D    LD   +++  H  ++++E  + G E+ CGV+   D  +  
Sbjct: 187 PARAGSSIGITKV--DDWAALDTAIAAAREHDPKVIVEAGIVGREVECGVLEFPDGRISA 244

Query: 190 T---EIAVPKSD---FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           +   EI +P+ D   FY ++ KY        +PAK+  DI ++V+ LA  A QA+ C+G+
Sbjct: 245 SVLAEIRMPEGDGPQFYDFDTKYLDDVCEFDVPAKLDDDIAEQVRELAVRAFQALDCQGL 304

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
           +R DF            EIN  PG T +S++P M    G  +  L+  ++E A   
Sbjct: 305 ARVDFFVTADG--PVINEINTMPGFTSISMYPRMWEATGIDYGTLVSTLIETALAR 358


>gi|322375680|ref|ZP_08050192.1| D-alanine--D-alanine ligase [Streptococcus sp. C300]
 gi|321279388|gb|EFX56429.1| D-alanine--D-alanine ligase [Streptococcus sp. C300]
          Length = 347

 Score =  303 bits (778), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 98/334 (29%), Positives = 160/334 (47%), Gaps = 41/334 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQ------------------------- 35
           + +L GG S+EREVS+ S ++   A+    F V                           
Sbjct: 5   IILLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDFIKTQEFSQTPGQEDRL 64

Query: 36  -----IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
                ID D+ +     + +  + F VLHG  GEDG VQ  LE+L++PY    IL+S+L+
Sbjct: 65  MTNATIDWDKKIAPSSIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLA 124

Query: 91  MDKMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
           MDK+ +K+V+ S G+   P +       V     + +  ++ P   KP   GSS+GI   
Sbjct: 125 MDKITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLTYPVFTKPSNMGSSVGISKS 184

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202
           +  + +   L    ++ +  ++L+EQ V+  E+  G++G+  +  T     V    FY Y
Sbjct: 185 ENQEELRQAL--ELAFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDY 242

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
           + KY     T  +PAKI  D+   ++  A  A +AIG  G+SR DF +     ++F  E+
Sbjct: 243 DAKYIDNKITMDIPAKISDDVVAVMRHNAETAFRAIGGLGLSRCDFFYTDK-GEIFLNEL 301

Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           N  PG T  S++P +    G S+ EL+  +V+ A
Sbjct: 302 NTMPGFTQWSMYPLLWDNMGISYPELIEHLVDLA 335


>gi|22298066|ref|NP_681313.1| D-alanyl-alanine synthetase A [Thermosynechococcus elongatus BP-1]
 gi|39930889|sp|Q8DLH0|DDL_THEEB RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|22294244|dbj|BAC08075.1| D-alanine:D-alanine ligase [Thermosynechococcus elongatus BP-1]
          Length = 343

 Score =  303 bits (778), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 97/341 (28%), Positives = 160/341 (46%), Gaps = 53/341 (15%)

Query: 1   MAVLMGGISSEREVSLSS----------GKACASALEDAGFKVSQIDVDRSVGLVLAHL- 49
           + +L GG S E EVS+ S          G           ++V  I +++          
Sbjct: 6   VGLLFGGRSREHEVSVVSAAAIAQAFAAGDN------GDRYEVIPIYIEKDGRWRHTERV 59

Query: 50  --------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
                                 D+ F ++HG  GEDG +Q +LEL++ PY  SG+ ASA+
Sbjct: 60  GIPEGTAPESSLWQFPAVVDTIDVWFPIVHGPNGEDGTIQGLLELMQRPYVGSGVAASAI 119

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------------QHLISPPYVIKPLKGGS 137
            MDK+  K V  + G+P  P + + R  + S            +  +  P  +KP   GS
Sbjct: 120 GMDKILMKTVFGAIGLPQVPYVALQRSDLWSDPCRYNHLCDRIETELGYPCFVKPANLGS 179

Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--DVTEIAVP 195
           S+GI   K  Q +   L  ++      ++++E  V   EL C V+G+      V      
Sbjct: 180 SVGISKAKNRQQLTTALEVAA--ELDRRIIVEAGVVARELECAVLGNDKPQASVVGEITY 237

Query: 196 KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255
            S+FY YE KY+   +   +PA+IP  + ++++ L+  A QA+G  G++R DF + P + 
Sbjct: 238 SSEFYDYETKYTDGRAQLHIPAEIPPAVSEQIRSLSLQAFQALGAAGLARFDFFYVPSTG 297

Query: 256 KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +V   E+N  PG T +S++P++ A +G SF EL+  +V+ A
Sbjct: 298 EVLINEVNTLPGFTALSMYPQLWAASGLSFPELVHRLVQLA 338


>gi|254967038|gb|ACT97555.1| putative D-alanine-D-alanine ligase [uncultured organism]
          Length = 366

 Score =  303 bits (777), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 93/349 (26%), Positives = 158/349 (45%), Gaps = 55/349 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44
           + VL GG+SSE EVS  S       L+   +++  I + +                    
Sbjct: 11  VVVLFGGMSSEHEVSRVSAGTFVDQLDRQRYELLTIGITKDGRWLYTEATSAQMADGSWE 70

Query: 45  --------------------------VLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIP 78
                                      +  ++ D+   VLHG +GEDG VQ +LEL  IP
Sbjct: 71  ELPGNMPCVVSPDRADHGLILFTPAGQVEKVRADVVIPVLHGLWGEDGTVQGLLELAGIP 130

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ---------HLISPPYV 129
           Y   G+LASA+ MDK  +  +  + G+P    +   R+ ++             +  P  
Sbjct: 131 YVGCGVLASAVCMDKAVANAMFDASGIPHTKWLSATRWEIECDPEGVCDGVIAKLGWPIF 190

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           +KP   GSS+GI        +   +  + +  +  +++ E +VDG E+ C V+G      
Sbjct: 191 VKPANAGSSVGITKAHDRTELKEAIRLALA--NDRKVVFEAFVDGHEVECAVIGSDPAVS 248

Query: 190 TEIA--VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           T     +  ++FY+Y+ KY +  S  V+PAK+P +   EV+  A +A+ A+GC G++R D
Sbjct: 249 TRPGEILAGAEFYTYDDKYKNGVSQVVIPAKLPEEKLDEVKTYAAMAYTALGCEGLARCD 308

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           F  +  + +V   EIN  PG TP+S++P++  + G     L+  ++  A
Sbjct: 309 FFVEKNTGRVLINEINTLPGFTPISMYPKLMEHEGIPVPALIDRLIALA 357


>gi|301063848|ref|ZP_07204332.1| D-ala D-ala ligase N-terminal domain protein [delta proteobacterium
           NaphS2]
 gi|300442051|gb|EFK06332.1| D-ala D-ala ligase N-terminal domain protein [delta proteobacterium
           NaphS2]
          Length = 311

 Score =  303 bits (777), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 103/304 (33%), Positives = 168/304 (55%), Gaps = 13/304 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL-KPDLAFNVLH 59
           +AVL GG S ER VS+ SG A   AL +  +     D    + L+     + DL  NVLH
Sbjct: 7   IAVLSGGWSKERSVSIKSGDAVLGALNNDKYDSRIFDPKEDLNLLWQKRGEIDLVLNVLH 66

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G FGEDG +Q +LE+  +P+  S +L+SA++M+K  SK+V  + G+ V   I++ R    
Sbjct: 67  GRFGEDGRIQGLLEIYGLPFMGSSVLSSAMAMNKRVSKEVYRNMGLLVPKDIILQRGGES 126

Query: 120 S----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175
           S    + ++  P VIKP+  GSS+GI +++ D  I   +    ++   +++L+E+YV+G 
Sbjct: 127 SINKIKDVLGTPIVIKPVSEGSSIGISIMENDADIQSGI--EKAFEFAEEILVEEYVEGR 184

Query: 176 ELTCGVMGDAS---LDVTEIAVPKSD-FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           E+T  V+G ++   L + EI   +S  F+ ++ KY +  S  + PA +  DI ++   + 
Sbjct: 185 EITGAVLGRSALETLPLIEIVPKESHRFFDFDAKYVAGESNEICPAALDPDISEKASEIV 244

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             AH+++ CR  SR+D +      +++ LE N  PGMT  S+ P  A   G+S   LL  
Sbjct: 245 KKAHRSLRCRDWSRTDMMIKK--DQIYVLETNTIPGMTETSLVPLAAKGRGWSLGHLLDR 302

Query: 292 MVED 295
           M+E 
Sbjct: 303 MIET 306


>gi|218295191|ref|ZP_03496027.1| D-alanine/D-alanine ligase [Thermus aquaticus Y51MC23]
 gi|218244394|gb|EED10919.1| D-alanine/D-alanine ligase [Thermus aquaticus Y51MC23]
          Length = 321

 Score =  303 bits (777), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 97/320 (30%), Positives = 157/320 (49%), Gaps = 33/320 (10%)

Query: 3   VLMGGISSEREVSLSSGKACAS----------------------ALEDAGFKVSQIDVDR 40
           ++ GG S E EVSL+S +                          AL     KV+    + 
Sbjct: 7   LIAGGKSPEHEVSLASAEGVLKHMPFPTELAVIAKDGAWLLGEEALRALEAKVAP-KGEH 65

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
                L   +  + F +LHG  GEDG +Q  LE+L  PY  +G+  SAL MDK  SK+V+
Sbjct: 66  PFPPPLDWDRYGVVFPLLHGPMGEDGTIQGFLEMLGKPYVGAGVAGSALCMDKDFSKRVL 125

Query: 101 SSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160
           +  G+PV P + + R          PP+ +KP   GSS+GI  +++   +   L    ++
Sbjct: 126 AQAGIPVVPWVALYRGETPLVP-FEPPFFVKPANTGSSIGISRVERYADLEEAL--EEAF 182

Query: 161 NHGDQLLIEQYVDG-IELTCGVMGD---ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216
            H  + ++E+ + G  EL  GV+G+    +  V E+   ++ FY YE KY+   +  ++P
Sbjct: 183 RHDRKAVVEKALSGVRELEVGVLGNVFGEASPVGEVRY-EAPFYDYETKYTPGRAELLIP 241

Query: 217 AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPE 276
           A +     + VQ +A  A++ +G RG++R DF       +++  E+N  PG TP S+FP 
Sbjct: 242 APLDPGTEETVQEMALKAYKVLGLRGMARVDFFL--AEGELYLNEVNTIPGFTPTSMFPR 299

Query: 277 MAAYAGYSFRELLLWMVEDA 296
           +    G ++ ELL  +VE A
Sbjct: 300 LFLAKGLTYPELLRRLVELA 319


>gi|227495298|ref|ZP_03925614.1| D-alanine--D-alanine ligase [Actinomyces coleocanis DSM 15436]
 gi|226831168|gb|EEH63551.1| D-alanine--D-alanine ligase [Actinomyces coleocanis DSM 15436]
          Length = 370

 Score =  303 bits (777), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 94/359 (26%), Positives = 155/359 (43%), Gaps = 61/359 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           + +L GG S E  +S ++  A  +A++   F+V  + +      V A   P         
Sbjct: 10  VMLLFGGRSGEHMISCATASAVMAAIDRERFEVVPVGITLEGQWVPALDDPQHYALKDGE 69

Query: 52  -------------------------------------DLAFNVLHGNFGEDGLVQAILEL 74
                                                D+ F +LHG FGEDG +Q +L+ 
Sbjct: 70  GAFVEAQGTQVAFLAGTNRLVEFSASNPEVFKDLGEVDVVFPLLHGPFGEDGTIQGLLDT 129

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--------DSQHLISP 126
            ++ Y   G+ ASA  MDK  +K ++   G+PV    L+             +    +  
Sbjct: 130 ADVRYVGCGLTASAAGMDKHLTKTIIQQAGIPVGRWELITDRQWLQDREGCLERIKALGE 189

Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM---- 182
              +KP + GSS+GI  +     +   +    +  H  ++++E    G EL CGV+    
Sbjct: 190 VVFVKPNRAGSSVGITRVADFTQLEAAV--EEARRHDPRVIVEAATPGRELECGVLEFLD 247

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCR 241
           G  +  V EI V  +DFY +E KY   ++  + +PA IP  +   +Q  A     A+GC 
Sbjct: 248 GPRASAVGEITVSGADFYDFETKYQDPDAVSLSIPADIPEGVRMRLQEAAVKVFDALGCE 307

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           G+SR DF ++  + ++   EIN  PG TP S++P M    G S+ EL+  +++ A   R
Sbjct: 308 GLSRVDFFYNEETDELSLNEINTMPGFTPFSMYPTMWQQQGLSYPELVTHLIDMALTRR 366


>gi|85058877|ref|YP_454579.1| D-alanine-D-alanine ligase A [Sodalis glossinidius str.
           'morsitans']
 gi|123519734|sp|Q2NUK1|DDL_SODGM RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|84779397|dbj|BAE74174.1| D-alanine-D-alanine ligase A [Sodalis glossinidius str.
           'morsitans']
          Length = 366

 Score =  303 bits (777), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 95/350 (27%), Positives = 162/350 (46%), Gaps = 55/350 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50
           +AVL GG S+E EVSL S      A++   + ++ I VD+     L   +          
Sbjct: 11  VAVLFGGQSTEHEVSLRSSMNVIRAIDRQKYDLTLIGVDKHGRWTLCDEQDYLLNADNPA 70

Query: 51  ---------------------------------PDLAFNVLHGNFGEDGLVQAILELLEI 77
                                             D+AF+VLHG  GEDG VQ +L +L I
Sbjct: 71  AIRLAPARCYLAVVPGQSGAQLIDAANGQPFPSIDVAFSVLHGASGEDGSVQGLLRVLNI 130

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIK 131
           PY    +L SA+ MDK  +K+V+   GVPV PS+ + R    +  +      +  P  IK
Sbjct: 131 PYAGPDVLGSAVCMDKDMTKRVLRDAGVPVTPSVTLLRTGDAAPDVDAIIGQLGLPLFIK 190

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  +            + ++ +  ++L+EQ + G E+   V+G+ S +V+ 
Sbjct: 191 PASQGSSVGVSKVTDR--AGFAAALALAFRYDAKVLVEQGISGREIETAVLGNDSPEVSV 248

Query: 192 IA--VPKSDFYSYELKYSSL-NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               +   +FY+Y+ KY     +  V+PA +P  I   ++++A  A+ A+GC  ++R DF
Sbjct: 249 CGEILANDEFYAYDTKYLKGAQAGLVIPAALPAPIADALRQMAREAYLALGCSVMARVDF 308

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
                  ++   E+N  PG T +S++P++   +G  +  L+  ++  A  
Sbjct: 309 FLTDQ-GQILLNEVNTLPGFTSISMYPKLWEASGLDYPALVDRLIVLARA 357


>gi|12231521|gb|AAG49141.1|AF215736_1 D-alanine:D-alanine ligase [Enterococcus faecium]
          Length = 358

 Score =  303 bits (777), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 88/342 (25%), Positives = 158/342 (46%), Gaps = 51/342 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV-------------LA 47
           + +L GG S+  EVS+ S  +  +A+    ++V  + + +    V             + 
Sbjct: 3   ITLLYGGRSAGHEVSILSAFSVLNAIYYNYYQVQLVFITKEGQWVKGPLLTEKPASKDVL 62

Query: 48  HLKPD------------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
           HL  D                        + F VLHG  GEDG +Q  LE L +PY  +G
Sbjct: 63  HLSWDPSGQTEEGFTGKVINPGEIKEEGAIVFPVLHGPNGEDGTIQGFLETLNMPYVGAG 122

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLK 134
           +L SA +MDK+ +K ++ + GVP  P + V +              +  +  P  +KP  
Sbjct: 123 VLTSACAMDKIMTKYILQAAGVPQVPYVPVLKNQWKENPKKVFDQCEGSLLYPMFVKPAN 182

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI-- 192
            GSS+GI   +  + +   L  ++++ +  + ++EQ ++  E+   V+G+  +  T    
Sbjct: 183 MGSSVGITKAENREELQNAL--ATAYQYDSRAIVEQGIEAREIEVAVLGNEDVRTTLPGE 240

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            V    FY YE KY +      +PA++P ++Y++ Q  A LA+  +G  G+SR DF    
Sbjct: 241 VVKDVAFYDYEAKYINNKIEMQIPAEVPEEVYQKAQEYAKLAYTMLGGSGLSRCDFFLTN 300

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
              ++F  E+N  PG T  S++P +    G  + +L+  +++
Sbjct: 301 K-NELFLNELNSMPGFTEFSMYPLLWENMGLKYGDLIEELIQ 341


>gi|218961626|ref|YP_001741401.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)
           (D-Ala-D-Ala ligase) [Candidatus Cloacamonas
           acidaminovorans]
 gi|167730283|emb|CAO81195.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)
           (D-Ala-D-Ala ligase) [Candidatus Cloacamonas
           acidaminovorans]
          Length = 314

 Score =  303 bits (777), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 109/312 (34%), Positives = 166/312 (53%), Gaps = 20/312 (6%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-----SVGLVLAHLKPDLAF 55
           + VL GG S EREVSL SG   ASAL + G+ V +ID         +   + + +P L F
Sbjct: 4   IVVLKGGTSPEREVSLVSGAEIASALRNMGYIVQEIDPADYPKLSDLLTAVQNEQPLLVF 63

Query: 56  NVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR 115
           N LHG  GE+G +QA L L  I +T SG  AS  SMDK  SK +  + G+PV   IL+  
Sbjct: 64  NGLHGGSGENGELQAALSLAGIKFTGSGFKASCFSMDKYISKLIALAEGIPVPKYILMRE 123

Query: 116 FTMDS----------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
             ++            + +  P ++KP   GSS+GI  ++  + +   + ++  ++H   
Sbjct: 124 DLLEDYQDVEDYSGFSNQLGLPIIVKPNDAGSSVGISRVECLEDLKPAVQKALQYSHS-- 181

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
           +L+E+Y+ G ELT  ++   +  V EI  P   +Y Y  KY+   + +  PA+I   + K
Sbjct: 182 VLLEEYIPGRELTVTIIDSEAYPVVEIK-PLEGWYDYTNKYTHGKTKYEAPAQIDDTVAK 240

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285
            +Q  A    +A G  G +R DF +D L  K ++LE+N  PGMT +S+ P  A  AG SF
Sbjct: 241 LLQLYALRLWKAFGLSGYARIDFRYDGL--KPYFLEVNTLPGMTSLSLTPMAAKAAGMSF 298

Query: 286 RELLLWMVEDAS 297
           +ELL  ++  A+
Sbjct: 299 QELLQKIIYIAA 310


>gi|184200683|ref|YP_001854890.1| D-alanine--D-alanine ligase [Kocuria rhizophila DC2201]
 gi|229485959|sp|B2GFL1|DDL_KOCRD RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|183580913|dbj|BAG29384.1| D-alanine--D-alanine ligase [Kocuria rhizophila DC2201]
          Length = 383

 Score =  303 bits (777), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 99/360 (27%), Positives = 154/360 (42%), Gaps = 67/360 (18%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           +AV+ GG SSE  +SL + ++   A++   + V  + +       L              
Sbjct: 19  IAVVFGGRSSEHSISLITARSVLRAIDRDRWDVVSVGISTDGAWFLCSQEELEALLDDQP 78

Query: 47  -----------------------------------AHLKPDLAFNVLHGNFGEDGLVQAI 71
                                                   D  F +LHG FGEDG +Q +
Sbjct: 79  MAQLPVGVHRVSLPLQTGDSRLLIHDTSEHGAPLSRGRHIDAVFPLLHGPFGEDGTLQGM 138

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--------DSQHL 123
           LEL ++PY   G+ ASA+ MDK   K    + G+ V P  +V+  T         ++   
Sbjct: 139 LELADLPYVGCGVAASAIGMDKHFMKLAFQAAGLEVGPYTVVHDRTWRTDPLGVREAVAE 198

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           +  P  +KP + GSS GI  +  D+   LD   +++  H  +L++E  +DG E+ C V+G
Sbjct: 199 LGFPVFVKPARAGSSFGITRV--DEPSQLDAAIATAREHDLKLVVEAGIDGREIECAVLG 256

Query: 184 DASLD------VTEIAVPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
               D        EI V     Y +E KY  S  +T   PA++P  +   ++R A  A  
Sbjct: 257 GHGTDEARASLPGEIEVHGHALYDFEAKYVESDGATLSCPARLPEHVIDTLRRDAVRAFH 316

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           A+   G+SR DF      R V   EIN  PG TP+S++P M A +G  +  L+  ++  A
Sbjct: 317 AVDGEGLSRCDFFVTADER-VLINEINTMPGFTPISMYPRMWAASGIDYSALIDELITLA 375


>gi|168483459|ref|ZP_02708411.1| D-alanine--D-alanine ligase (D-alanylalanine
           synthetase)(D-Ala-D-Ala ligase) [Streptococcus
           pneumoniae CDC1873-00]
 gi|172043156|gb|EDT51202.1| D-alanine--D-alanine ligase (D-alanylalanine
           synthetase)(D-Ala-D-Ala ligase) [Streptococcus
           pneumoniae CDC1873-00]
          Length = 347

 Score =  303 bits (777), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 100/334 (29%), Positives = 161/334 (48%), Gaps = 41/334 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQ------------------------- 35
           + +L GG S+EREVS+ S ++   A+    F V                           
Sbjct: 5   IILLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDFIKTQEFGQTPGQEDRL 64

Query: 36  -----IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
                ID D+ V     + +  + F VLHG  GEDG VQ  LE+L++PY    IL+S+L+
Sbjct: 65  MTNATIDWDKKVAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLA 124

Query: 91  MDKMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
           MDK+ +K+V+ S G+   P +       V     + +  ++ P   KP   GSS+GI   
Sbjct: 125 MDKITTKRVLESVGIAQVPYVAIVEGDDVTAKIDEVEEKLAYPVFTKPSNMGSSVGISKS 184

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202
           +  + +   L    ++ +  ++L+EQ V+  E+  G++G+  +  T     V    FY Y
Sbjct: 185 ENQEELRQAL--ELAFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDY 242

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
           + KY     T  +PAKI  D+   +++ A  A +AIG  G+SR DF +     +VF  E+
Sbjct: 243 DAKYIDNKITMDIPAKISDDVIAVMRQNAETAFRAIGGLGLSRCDFFYTDK-GEVFLNEL 301

Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           N  PG T  S++P +    G S+ EL+  +V+ A
Sbjct: 302 NTMPGFTQWSMYPLLWDNMGISYPELIERLVDLA 335


>gi|315502030|ref|YP_004080917.1| d-alanine/d-alanine ligase [Micromonospora sp. L5]
 gi|315408649|gb|ADU06766.1| D-alanine/D-alanine ligase [Micromonospora sp. L5]
          Length = 377

 Score =  303 bits (777), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 98/359 (27%), Positives = 167/359 (46%), Gaps = 62/359 (17%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           + V+ GG S+E EVS +S    A AL + G +V  + + R+ G+ L              
Sbjct: 7   IGVVFGGPSAEHEVSCASALGVARALAEQGHRVVALGITRTGGIRLLPEPVLAQHLGTVT 66

Query: 47  -------------------------------------AHLKPDLAFNVLHGNFGEDGLVQ 69
                                                 H + D+ F VLHG +GEDG+VQ
Sbjct: 67  AGRAIDDRLPVTGPAVELRRGTTTGTVAVGAADAPATVHAELDVVFPVLHGPYGEDGVVQ 126

Query: 70  AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ 123
            +LE L +PY   GILASA+ MDK+  K+ + +  VP  P +  +  T  +         
Sbjct: 127 GLLESLGVPYVGCGILASAVGMDKVAMKRALRAEDVPTTPYVWFDEPTWRAASDPEKLVV 186

Query: 124 -ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            +  P  +KP + GSS+GI  +    ++   +    ++ H   +L+EQ V G EL CGV+
Sbjct: 187 GLRGPLFVKPARMGSSIGISRVADGDNLIAAV--EEAFRHDHVVLVEQGVTGRELECGVL 244

Query: 183 GDASLDVTEIAVPK--SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           G    + + +   +    ++ Y  KY       ++PA +P ++ + ++ L+  A  AIG 
Sbjct: 245 GGWQPEASAVGEVRVAGGWFDYRQKYFGDADPMIVPAPLPDEVTERIRELSVRAFTAIGG 304

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
            G++R DFL+D  +  +F  E+N  PG T  S++P++ A +G ++ +++  +V  A   
Sbjct: 305 WGLARVDFLYDETTSDLFVNELNTLPGFTAHSMYPKVWAESGVAYPDVVDRLVALAFTR 363


>gi|291542820|emb|CBL15930.1| D-alanine--D-alanine ligase [Ruminococcus bromii L2-63]
          Length = 349

 Score =  303 bits (777), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 94/342 (27%), Positives = 155/342 (45%), Gaps = 52/342 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44
           +AV+ GG S+E EVSL S  +    +    + +  I + R+                   
Sbjct: 6   IAVIFGGNSTEYEVSLQSAFSVFENINHDKYDIIPIGITRNGDWYHYKGRYENIANNTWS 65

Query: 45  --------------------------VLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIP 78
                                         +  DL F +LHG  GEDG +Q + EL  IP
Sbjct: 66  GDRDNLYPVTVSVSHSQKGIWEFDEDQYTAVHIDLVFPILHGKNGEDGTLQGMFELSGIP 125

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-----QHLISPPYVIKPL 133
                 LASAL MDK R+ ++VS  GV V  S+   R   ++     +  +S P  +KP+
Sbjct: 126 VIGCNTLASALCMDKDRAHKLVSLAGVKVPKSVTFKRSEKNTALKKIETELSYPLFVKPV 185

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
           + GSS GI  + +   I   +   S++ H  ++++E+ + G E+ C ++G  +L V  I 
Sbjct: 186 RAGSSFGITKVTEQAEINTAI--ESAFEHDTEVIVEEAIGGFEVGCAILGIDNLTVRRID 243

Query: 194 VPK--SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
             +  + F+ Y  KY+   S   +PA++     K VQ  A   ++A+GC G +R D  + 
Sbjct: 244 EIELSNGFFDYTEKYTLKTSKIHMPARLSPKEEKRVQETAVAIYKALGCSGFARVDMFYT 303

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           P   ++ + E+N  PG+T  S +P M    G SF ++L  ++
Sbjct: 304 PS-NEIIFNEVNTIPGLTSHSRYPNMMKGIGLSFADMLDKLI 344


>gi|317506518|ref|ZP_07964316.1| D-alanine-D-alanine ligase [Segniliparus rugosus ATCC BAA-974]
 gi|316255187|gb|EFV14459.1| D-alanine-D-alanine ligase [Segniliparus rugosus ATCC BAA-974]
          Length = 358

 Score =  303 bits (777), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 91/350 (26%), Positives = 158/350 (45%), Gaps = 58/350 (16%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP----------- 51
           V+ GG+SSE E+S  S  +  + L+ + ++   + + +    VL    P           
Sbjct: 9   VVFGGVSSEHEISCLSAASILAQLDSSRYEAVPVGITKEGDWVLDRRPPEVLGDKLGGLP 68

Query: 52  ---------------------------------DLAFNVLHGNFGEDGLVQAILELLEIP 78
                                            D+ F VLHG FGEDG +Q +LE   +P
Sbjct: 69  QVDASAPRVALAVGRTGSGELRQVSDGALVATADVVFPVLHGPFGEDGTLQGLLEFANLP 128

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL----ISPPYVIKPLK 134
           Y   G+ ASA  MDK + K ++   G+PV P   +       +      +  P  +KP +
Sbjct: 129 YVGCGVFASAACMDKTQMKVLLRGGGLPVGPYEALAPGEDVDEAALRDRLGLPLFVKPAR 188

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG--DASLDVT-- 190
           GGSSLG++ +++ + +P  +  + +  +  ++L+E  + G E+ C V+   D  ++ +  
Sbjct: 189 GGSSLGVVKVERWEDLPEAV--AVARKYDPKVLVETGIAGREVECAVLEFPDGRVEASVL 246

Query: 191 -EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
            EI VP  D Y +E KY +  +   +PA +   +  E++ LA  A + + C G++R DF 
Sbjct: 247 GEIVVP--DAYDFETKYLNNIARLQVPADVSEPLASEIRALAVRAFETMDCSGLARVDFF 304

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
                  +   E+N  PG T  S++P+M    G  + +LL  ++E A   
Sbjct: 305 IAEDGGPI-INELNTLPGFTTSSLYPKMWEQTGLDYSKLLDTLIETAFAR 353


>gi|219667711|ref|YP_002458146.1| D-alanine--D-lactate ligase [Desulfitobacterium hafniense DCB-2]
 gi|219537971|gb|ACL19710.1| D-alanine/D-alanine ligase [Desulfitobacterium hafniense DCB-2]
          Length = 341

 Score =  303 bits (776), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 96/338 (28%), Positives = 147/338 (43%), Gaps = 45/338 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           +A++ GG S E  VS+ S    A  L+   ++   I + +     L H            
Sbjct: 6   IAIIFGGCSEEHPVSVKSAGEVAKNLDLEKYEPFYIGITKDGVWQLCHYPEANWEKGSCR 65

Query: 49  -----------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
                                  +  DL F VLHG FGEDG +Q +LEL  IPY    I 
Sbjct: 66  PAILSPDRSVQGLLVLEQGQYQRIPLDLVFPVLHGKFGEDGAIQGLLELSGIPYVGCDIP 125

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145
           +SAL MDK  +  V    G+       V          ++ P  +KP + GSS G+  + 
Sbjct: 126 SSALCMDKSLAYIVAGKAGIATPKFRTVTAKETIDAERLAYPVYVKPARSGSSFGVTKVC 185

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYS 201
           + + +   +    +  +  ++LIE+ V G E+ C + G+     + +V +I +    F  
Sbjct: 186 RQEELLSAVEI--ARQYDSKVLIEEAVVGSEVGCAIFGNDLDLMAGEVDQICLSHGFFRI 243

Query: 202 Y---ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
           +   E +  S NST ++PA I  +    VQ  A   ++A+GCRG++R D         V 
Sbjct: 244 HQENEPEKGSENSTLIVPADISPEARSRVQETAKAIYRALGCRGLARVDMFL-KEDGTVI 302

Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             E+N  PGMT  S FP M A AG  F E++  +V  A
Sbjct: 303 LNEVNTLPGMTSYSRFPRMMAAAGLPFAEVIDRLVSLA 340


>gi|307709606|ref|ZP_07646059.1| D-alanine--D-alanine ligase [Streptococcus mitis SK564]
 gi|307619642|gb|EFN98765.1| D-alanine--D-alanine ligase [Streptococcus mitis SK564]
          Length = 347

 Score =  303 bits (776), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 99/334 (29%), Positives = 162/334 (48%), Gaps = 41/334 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQ------------------------- 35
           + +L GG S+EREVS+ S ++  SA+    F V                           
Sbjct: 5   IILLYGGRSAEREVSVLSAESVMSAVNYDRFTVKTFFISQSGDFIKTQEFSQTPGQEDRL 64

Query: 36  -----IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
                ID D+ V     + +  + F VLHG  GEDG VQ  LE+L++PY    IL+S+L+
Sbjct: 65  MTNATIDWDKKVVPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLA 124

Query: 91  MDKMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
           MDK+ +K+V+ S G+   P +       V     + +  ++ P   KP   GSS+GI   
Sbjct: 125 MDKITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLTYPVFTKPSNMGSSVGISKS 184

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202
           +  + +   L    ++ +  ++L+EQ V+  E+  G++G+  +  T     V    FY Y
Sbjct: 185 ENQEELRQAL--ELAFRYDSRVLVEQGVNAREIEVGLLGNYYVKSTLPGEVVKDVAFYDY 242

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
           + KY     T  +PAKI  D+   +++ A  A +AIG  G+SR DF +     ++F  E+
Sbjct: 243 DAKYIDNKITMDIPAKIGDDVVAVMRQNAETAFRAIGGLGLSRCDFFYTDK-GEIFLNEL 301

Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           N  PG T  S++P +    G S+ +L+  +V+ A
Sbjct: 302 NTMPGFTQWSMYPLLWDNMGISYPDLIERLVDLA 335


>gi|194015885|ref|ZP_03054500.1| D-alanine--D-alanine ligase (D-alanylalanine
           synthetase)(D-Ala-D-Ala ligase) [Bacillus pumilus ATCC
           7061]
 gi|194012240|gb|EDW21807.1| D-alanine--D-alanine ligase (D-alanylalanine
           synthetase)(D-Ala-D-Ala ligase) [Bacillus pumilus ATCC
           7061]
          Length = 360

 Score =  303 bits (776), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 94/345 (27%), Positives = 154/345 (44%), Gaps = 52/345 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           + ++ GG S+E  VSL +  A   AL    F +  I +      +               
Sbjct: 5   LGLIYGGKSAEHNVSLQTALAVTKALNTEKFDIHPIYITEEGEWLRGEKLTEPVSNVRML 64

Query: 47  ------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
                                   A  K D+ F +LHG  GEDG +Q +LELL IPY  +
Sbjct: 65  QFEQSAKTFLPTSLNESMFPQPASADEKIDVVFPLLHGPNGEDGTMQGLLELLNIPYVGN 124

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPL 133
           G+LASA  MDK+  K V +  G+     +  N+   +          + ++  P  +KP 
Sbjct: 125 GVLASAAGMDKVMMKDVFAQAGLAQAKHLSFNKKDYEKATADSLEQVEQVLGYPCFVKPA 184

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--DVTE 191
             GSS+GI   +  + +        ++ +  ++++E+ V G EL  GV+G+      V  
Sbjct: 185 NMGSSVGISKCRSKEELQTAFDL--AFQYDRRVVVEEGVVGRELEIGVLGNDEPKCSVVG 242

Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
              PK+DFY Y+ KY   ++  ++PA +  D YK +  +A  A +++   G+ R+DF   
Sbjct: 243 EIAPKTDFYDYKAKYEDGDTDLIIPASVSEDEYKTIHDMAIKAFKSLDGSGLVRADFFLT 302

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
               +V   E+N  PG TP S+FP +  + G  + EL+  +V  A
Sbjct: 303 EK-GEVLINEVNTMPGFTPFSMFPLLWKHTGVEYPELIEKLVSLA 346


>gi|38233721|ref|NP_939488.1| D-alanyl-alanine synthetase A [Corynebacterium diphtheriae NCTC
           13129]
 gi|81401496|sp|Q6NHK6|DDL_CORDI RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|38199982|emb|CAE49651.1| D-alanine--d-alanine ligase [Corynebacterium diphtheriae]
          Length = 365

 Score =  303 bits (776), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 94/349 (26%), Positives = 156/349 (44%), Gaps = 57/349 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +A++ GG SSE  VS  S  A  + L+   ++V  + +       +    P         
Sbjct: 18  VAIIYGGRSSEHSVSCVSAGAIMAHLDPQRYEVFPVGITHDGVWTVGESDPSRLKTVDRV 77

Query: 52  ---------------------------------DLAFNVLHGNFGEDGLVQAILELLEIP 78
                                            D+ F VLHG FGEDG +Q + EL  +P
Sbjct: 78  MPEVQFTREVSLSVNPTTAGELCFEDGSLYAKVDVVFPVLHGRFGEDGTIQGLFELSGVP 137

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF---TMDSQHLISPPYVIKPLKG 135
           Y  +G+L+SA  MDK  +K+++++ G+PV   +++      T + +  +  P  +KP +G
Sbjct: 138 YVGTGVLSSACGMDKEFTKKLMAAEGLPVGKEVILRGSETLTEEHKRELGLPVFVKPARG 197

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG--DASLDVTEIA 193
           GSS+GI  +        D   S +  H  ++++E  + G+E+ CGV+   D SL  +  A
Sbjct: 198 GSSIGISRVADWSEW--DAALSLAREHDSKVIVEAEIVGVEVECGVLERIDGSLMASVPA 255

Query: 194 ------VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
                      FY ++ KY     T  +PA    +    +Q L+  A  A+ CRG++R D
Sbjct: 256 QLQDTDEGDEGFYGFDTKYLDDVVTAHIPAPFDAETTALIQELSLKAFTALSCRGLARVD 315

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           F            EIN  PG TP+S++P++    G  + +LL  ++E A
Sbjct: 316 FFVTDHG--PVLNEINTMPGFTPISMYPQVFEATGIGYAQLLDNLIEQA 362


>gi|269216512|ref|ZP_06160366.1| D-alanine--D-alanine ligase [Slackia exigua ATCC 700122]
 gi|269130041|gb|EEZ61123.1| D-alanine--D-alanine ligase [Slackia exigua ATCC 700122]
          Length = 317

 Score =  303 bits (776), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 121/307 (39%), Positives = 172/307 (56%), Gaps = 14/307 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-DRSVGLVLAHLKPDLAFNVLH 59
           +AVL GG S ERE+SL SG ACA AL + GF V  ID  D      L     D+AF  LH
Sbjct: 12  VAVLYGGTSGEREISLKSGAACAEALAELGFSVQLIDTQDYEQLKRLIEESFDVAFLALH 71

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G  GEDG VQ  LE + +PYT SGILASAL+++K R+K+     G+ V PS+ V R    
Sbjct: 72  GKGGEDGTVQGFLETIGLPYTGSGILASALAVNKARAKESYERAGLLVAPSVTVGRDDPL 131

Query: 120 SQHLI-------SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
            +  +         P V+KP   GSSLG+ +++    +   +  + S     + +IE ++
Sbjct: 132 DEGFLDECIDICGMPCVVKPTTEGSSLGMTIVRDATDLRKGIETALS--VDVEAMIEGFI 189

Query: 173 DGIELTCGVMGDA---SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           +G ELT GVMG+    +L V +I   + +FY++  KY+   S H+ PA +  ++ + VQ 
Sbjct: 190 EGTELTVGVMGNDDPVALPVIQIVPTEDEFYNFHAKYAQGGSRHLCPAPLSPELTESVQE 249

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           LA  AH  +GCRGISR+D + D  +R  + LE N  PGMT  S+ P+ A  AG  F  + 
Sbjct: 250 LAVAAHSVLGCRGISRTDIMVDAENR-CWVLETNTLPGMTGTSLVPDAARVAGMGFSRVC 308

Query: 290 LWMVEDA 296
             ++E A
Sbjct: 309 ERLIELA 315


>gi|258405198|ref|YP_003197940.1| D-alanine/D-alanine ligase [Desulfohalobium retbaense DSM 5692]
 gi|257797425|gb|ACV68362.1| D-alanine/D-alanine ligase [Desulfohalobium retbaense DSM 5692]
          Length = 302

 Score =  303 bits (776), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 100/297 (33%), Positives = 156/297 (52%), Gaps = 7/297 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV-LAHLKPDLAFNVLH 59
           + ++ GG S+ER+VS+S GKA A+AL   G +V   D  +    +     + D  F  LH
Sbjct: 3   ILLIAGGWSNERDVSISGGKAIAAALRANGHEVHWFDPAQEFAELPTKARQSDFVFINLH 62

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR-FTM 118
           G  GEDGL+QA+L+ L  PY  SG   S L++DK  +K + +  G+      LV      
Sbjct: 63  GAPGEDGLIQAMLDRLGCPYQGSGPAGSLLALDKTATKTLYAQAGLATPAWELVTSCREE 122

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           + Q  +  P  IKP +GGSSLG+  +   + +   L Q   +     +L+E+ V G E+T
Sbjct: 123 NWQPALRFPLFIKPNQGGSSLGVQRVYSQKELHPQLSQQLQF--SSAVLLEEAVTGKEVT 180

Query: 179 CGVMGDASLDVTEIAV-PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           C V+G+ +L +  I    ++ F+ Y  KY+   +  + PA +   +   +Q+ A  AH+ 
Sbjct: 181 CAVVGEQALPLVLIEPGDEAAFFDYHSKYTPEAAREICPAPLSETLTAAIQKAALEAHRI 240

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           +G  G SR+DF+    +   F LE N  PGMTP S+ P+ AA  G  F  LL  +++
Sbjct: 241 LGLTGYSRTDFIL--ANGTAFALETNTLPGMTPTSLLPQAAAARGQDFNGLLEELIQ 295


>gi|228474869|ref|ZP_04059598.1| D-alanine--D-alanine ligase [Staphylococcus hominis SK119]
 gi|228271101|gb|EEK12481.1| D-alanine--D-alanine ligase [Staphylococcus hominis SK119]
          Length = 356

 Score =  303 bits (776), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 80/339 (23%), Positives = 150/339 (44%), Gaps = 46/339 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           + ++ GG S+E +VS+ + +   +A+    + V  I +                      
Sbjct: 6   ICIVYGGKSAEHDVSILTAQNVLNAINKDKYLVDIIYITNDGQWKKKENITKNIKTVEEL 65

Query: 49  --------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
                                K D  F +LHG  GEDG +Q + E+L++PY  +G+LA++
Sbjct: 66  HLEDISPGEITLLLKENGEGSKYDAIFPLLHGPNGEDGTIQGLFEVLDLPYVGNGVLAAS 125

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSL 139
            SMDK+  KQ+    G+P  P I   R   +             ++ P  +KP+  GSS+
Sbjct: 126 SSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYEGNIIKLVNDKLTYPVFVKPVNLGSSV 185

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKS 197
           GI     +  +   + ++  ++   +L+IEQ +   E+   V+G+   + T     +   
Sbjct: 186 GISKCNNEDELKKGIEEAFQFDR--KLVIEQGIIAREVEVAVLGNDYPETTWPGEVIKDV 243

Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
            FY Y+ KY     +  +PA +  ++   ++ +A  A +A  C G+ R+DF       ++
Sbjct: 244 QFYDYKSKYKDGKISLQIPADLDEEVQMTLRNMALEAFKATDCSGLVRADFFVTE-DNQI 302

Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +  E N  PG T  S++P +    G S+ +L+  +++ A
Sbjct: 303 YINETNAMPGFTAFSMYPNLWENMGLSYSDLITKLIDLA 341


>gi|256784985|ref|ZP_05523416.1| D-alanyl-alanine synthetase A [Streptomyces lividans TK24]
          Length = 367

 Score =  303 bits (776), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 103/362 (28%), Positives = 158/362 (43%), Gaps = 71/362 (19%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP---------- 51
           AV+ GG SSE  +S+ +  A  +A++   + V  I + R     L   +P          
Sbjct: 2   AVVFGGRSSEHGISVVTAGAVLAAIDRTRYDVLPIGITRDGRWALTADEPERMAITERRT 61

Query: 52  ----------------------------------------DLAFNVLHGNFGEDGLVQAI 71
                                                   D+ F VLHG +GEDG +Q +
Sbjct: 62  PDVEELAESTEGGVLLPVDPANREVVYSEPGSVPKALGEVDVVFPVLHGPYGEDGTLQGL 121

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM------------D 119
           LEL  +PY  +G+LASA+  DK   K V +S G+ V P  ++                 D
Sbjct: 122 LELSGVPYVGAGVLASAVGQDKEYMKAVFTSYGLKVGPYAVIRPREWEQDRSGARKKIVD 181

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
                  P  +KP + GSS+GI  +  D    LD     +  H  ++L+E  + G E+ C
Sbjct: 182 FAGEHGWPLFVKPARAGSSIGITKV--DDLAGLDEAIEEARRHDPKILVEAALRGREIEC 239

Query: 180 GVM----GDASLDVTEIAVP-KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
           GV+    G  +    EI  P +  +Y +E KY   ++  ++PA +  +   EVQRLA  A
Sbjct: 240 GVLEFEDGPRASVPAEIPPPSEHAYYDFEAKY-IDSTPGIVPAPLTAEETAEVQRLAVAA 298

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             A  C G+ R+DF       +    EIN  PG TP+S++P+M   +G S+ EL+  +V+
Sbjct: 299 FDAASCEGLVRADFFLTE-DDEFVINEINTMPGFTPISMYPQMWQASGVSYPELVDRLVQ 357

Query: 295 DA 296
            A
Sbjct: 358 AA 359


>gi|331265947|ref|YP_004325577.1| D-ala,D-ala ligase [Streptococcus oralis Uo5]
 gi|326682619|emb|CBZ00236.1| D-ala,D-ala ligase [Streptococcus oralis Uo5]
          Length = 347

 Score =  303 bits (776), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 97/334 (29%), Positives = 160/334 (47%), Gaps = 41/334 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQ------------------------- 35
           + +L GG S+EREVS+ S ++   A+    F V                           
Sbjct: 5   IILLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDFIKTQEFSQTPGQEDRL 64

Query: 36  -----IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
                ID ++ +     + +  + F VLHG  GEDG VQ  LE+L++PY    IL+S+L+
Sbjct: 65  MTNATIDWNKKIAPSSIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLA 124

Query: 91  MDKMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
           MDK+ +K+V+ S G+   P +       V     + +  ++ P   KP   GSS+GI   
Sbjct: 125 MDKITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLTYPVFTKPSNMGSSVGISKS 184

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202
           +  + +   L    ++ +  ++L+EQ V+  E+  G++G+  +  T     V    FY Y
Sbjct: 185 ENHEELRQAL--ELAFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDY 242

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
           + KY     T  +PAKI  D+   ++  A  A +AIG  G+SR DF +     ++F  E+
Sbjct: 243 DAKYIDNKITMDIPAKISDDVVAVMRHNAETAFRAIGGLGLSRCDFFYTDK-GEIFLNEL 301

Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           N  PG T  S++P +    G S+ EL+  +V+ A
Sbjct: 302 NTMPGFTQWSMYPLLWDNMGISYPELIERLVDLA 335


>gi|255655421|ref|ZP_05400830.1| D-alanine--D-alanine ligase [Clostridium difficile QCD-23m63]
 gi|296451413|ref|ZP_06893150.1| D-alanine--D-alanine ligase [Clostridium difficile NAP08]
 gi|296880238|ref|ZP_06904204.1| D-alanine--D-alanine ligase [Clostridium difficile NAP07]
 gi|296259680|gb|EFH06538.1| D-alanine--D-alanine ligase [Clostridium difficile NAP08]
 gi|296428827|gb|EFH14708.1| D-alanine--D-alanine ligase [Clostridium difficile NAP07]
          Length = 299

 Score =  303 bits (776), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 94/298 (31%), Positives = 144/298 (48%), Gaps = 9/298 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59
           +AV+MGGISSEREVSL+SGK   + L+   ++V ++ +D +           D A   LH
Sbjct: 3   IAVIMGGISSEREVSLNSGKEIYNNLDKNKYEVVKVIIDDKKDIFTKIPEDIDFAILALH 62

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL---VNRF 116
           G FGEDG +Q+ILE ++IPY+  G L S + MDK  +K+++    +P  P +L   V+  
Sbjct: 63  GKFGEDGCIQSILETMDIPYSGCGPLCSGMCMDKNITKKMLRDSNLPTAPWVLVKSVDEI 122

Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
             D    I  P  IKP  GGSS+    I     +   + +       + ++IE+Y+ G E
Sbjct: 123 DYDEIDNIGYPVFIKPNSGGSSVATFFIHSKDEVGEAVRKGL--EVDEFVMIEKYIPGGE 180

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
            T  ++         I    S F+ YE KYS           +  ++ K V  ++    +
Sbjct: 181 YTSFILNGEVFPTISIK-SDSGFFDYEAKYSVEKGAKEEVVYLDEELQKRVNEISETCWK 239

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
              C+   R D +        + LE+N  PGMT  S+ P  AA  G  + ELL  ++E
Sbjct: 240 IFNCKAYVRVDMIISE--GIPYVLELNTLPGMTQTSLIPRSAAARGIKYSELLDKLIE 295


>gi|254967044|gb|ACT97558.1| putative D-alanine-D-alanine ligase [uncultured organism]
          Length = 383

 Score =  303 bits (776), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 112/345 (32%), Positives = 171/345 (49%), Gaps = 55/345 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-----DRSVGLV---------- 45
           + VL GG+S+ER+VS  +G   A AL++ G KV  +DV     DR   L           
Sbjct: 21  IVVLAGGLSTERDVSFKTGSMVAKALKENGHKVILLDVFMGYSDREEDLTGIFDRADEIS 80

Query: 46  ------------LAHLKP---------------------DLAFNVLHGNFGEDGLVQAIL 72
                       LA +K                      D+ F  LHG  GE+G +QA  
Sbjct: 81  VQVSDIPTEAPDLAKVKASRKDQSPCFFGPNVIKICQMADIVFMALHGENGENGKIQAAF 140

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---QHLISPPYV 129
           +L  + YT S  L+SA++M+K  SKQ   + G+P    I + R T      +  ++ P V
Sbjct: 141 DLFGVKYTGSDYLSSAIAMNKETSKQFFLANGIPTPKGISMTRATRQDDITKLDLTLPCV 200

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           +KP  GGSS+G+ +++        L  +  W   ++L+IE++V G E + GV+   +L +
Sbjct: 201 VKPCCGGSSIGVTIVRDAAEFKAALDDAFKWE--NELVIEEFVQGREFSVGVIEGKALPI 258

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
            EIA PK  FY Y+ KY + ++    PA++P  + K++Q  A    + IG    SRSDFL
Sbjct: 259 IEIA-PKEGFYDYKNKYKAGSTVETCPAELPEQVTKDMQHYAEEVARVIGLDTYSRSDFL 317

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            +    ++F LE N  PGMTP S+ P+ AA  G SF +L   +++
Sbjct: 318 LNDK-NEMFCLEANTLPGMTPTSLLPQEAAVIGMSFNQLCEHLID 361


>gi|118617561|ref|YP_905893.1| D-alanyl-alanine synthetase A [Mycobacterium ulcerans Agy99]
 gi|166198494|sp|A0PQ03|DDL_MYCUA RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|118569671|gb|ABL04422.1| d-alanine--D-alanine ligase DdlA [Mycobacterium ulcerans Agy99]
          Length = 373

 Score =  303 bits (776), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 104/357 (29%), Positives = 168/357 (47%), Gaps = 65/357 (18%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD-------- 52
           +AV+ GG S+E  +S  S  +    L+   F+V  I +      VL    PD        
Sbjct: 13  VAVVFGGRSNEHAISCVSAGSILRNLDPRRFEVIAIGITPQGSWVLTDGNPDALAITDRR 72

Query: 53  ---------------------------------------LAFNVLHGNFGEDGLVQAILE 73
                                                  + F VLHG +GEDG +Q +LE
Sbjct: 73  LPEVSSQSGTELALPADPRWGGQLVSLPPGAGEVLASVDVVFPVLHGPYGEDGTIQGLLE 132

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHL--ISPPYV 129
           L  +PY  +G+LASA  MDK  +K++ S+ G+P+ P  ++   R ++D + L  +  P  
Sbjct: 133 LAGVPYVGAGVLASAAGMDKEFTKKLWSAAGLPIGPHAVLRPSRQSLDREELQRLGLPAY 192

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG--DASL 187
           +KP +GGSS+G+  +     +P  +  +++  H  ++++E  ++G EL CGV+   D  L
Sbjct: 193 VKPARGGSSIGVSRVSSFDELPAAI--AAARRHDPKVIVEAAINGRELECGVLEFPDGRL 250

Query: 188 DVT---EIAVP-----KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
           + +   EI V      +  FY +E KY    +   +PAK+  D+   V++LA  A +AI 
Sbjct: 251 EASTLGEIRVAGVRGREDGFYDFETKYLDDAAELDVPAKVEDDVADAVRQLAIRAFEAID 310

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           C+G++R DF            E+N  PG T +S++P M   +G  +  LL  MVE A
Sbjct: 311 CQGLARVDFFLT--DDGPVINELNTMPGFTTISMYPRMWVASGVDYPTLLATMVETA 365


>gi|314935966|ref|ZP_07843316.1| D-alanine--D-alanine ligase [Staphylococcus hominis subsp. hominis
           C80]
 gi|313655972|gb|EFS19714.1| D-alanine--D-alanine ligase [Staphylococcus hominis subsp. hominis
           C80]
          Length = 356

 Score =  303 bits (776), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 81/339 (23%), Positives = 150/339 (44%), Gaps = 46/339 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           + ++ GG S+E +VS+ + +   +A+    + V  I +                      
Sbjct: 6   ICIVYGGKSAEHDVSILTAQNVLNAINKDKYLVDIIYITNDGQWKKKENITKNIKTIEEL 65

Query: 50  ---------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
                                K D  F +LHG  GEDG +Q + E+L++PY  +G+LA++
Sbjct: 66  HLEDISPGEITLLLKENGEGNKYDAIFPLLHGPNGEDGTIQGLFEVLDLPYVGNGVLAAS 125

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSL 139
            SMDK+  KQ+    G+P  P I   R   +             ++ P  +KP   GSS+
Sbjct: 126 SSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYEGNIIKLVNDKLTYPVFVKPANLGSSV 185

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKS 197
           GI     +  +   + ++  ++   +L+IEQ V   E+   V+G+   + T     +   
Sbjct: 186 GISKCNNEDELKKGIEEAFQFDR--KLVIEQGVIAREVEVAVLGNDYPETTWPGEVIKDV 243

Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
            FY Y+ KY     +  +PA++  ++   ++ +A  A +A  C G+ R+DF       ++
Sbjct: 244 QFYDYKSKYKDGKISLQIPAELDEEVQMTLRNMALEAFKATDCSGLVRADFFVTE-DNQI 302

Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +  E N  PG T  S++P +    G S+ +L+  +++ A
Sbjct: 303 YINETNAMPGFTAFSMYPSLWENMGLSYSDLITKLIDLA 341


>gi|332295511|ref|YP_004437434.1| D-alanine--D-alanine ligase [Thermodesulfobium narugense DSM 14796]
 gi|332178614|gb|AEE14303.1| D-alanine--D-alanine ligase [Thermodesulfobium narugense DSM 14796]
          Length = 308

 Score =  303 bits (776), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 96/307 (31%), Positives = 162/307 (52%), Gaps = 15/307 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR----SVGLVLAHLKPDLAFN 56
           + +L GG SSE+EVS+ S +    +L +  + V  +D+       +   +     DL F 
Sbjct: 3   ILILCGGTSSEKEVSIWSAENVYKSLINTEYIVEMVDIATLSPYELCQKILCENFDLVFP 62

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116
           VLHG  GEDG +Q  L+ L I Y  SG+ + A++MDK R K +  S   P    I +   
Sbjct: 63  VLHGKPGEDGSIQGFLDTLGIKYIGSGVFSCAITMDKYRYKLICKSLEFPQPDFIAIRTK 122

Query: 117 T----MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                ++   L   P V+KP   GSS+G+ ++  +  +   L     + +   +L+E+++
Sbjct: 123 DSTEVLEFVRLKGFPLVVKPNSQGSSVGVSIVNNNNELKDAL--ELGFKYDPIVLVEEFI 180

Query: 173 DGIELTCGVMGDA---SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
            G E+TCGV+G++   +L + EI +PK+ F+ YE KY+      ++PA++  ++   +Q 
Sbjct: 181 HGKEITCGVIGNSNVIALPLVEI-LPKTKFFDYESKYNPQLCDEIVPARLNDNLKDRLQE 239

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           LA  A++A  C+   R D   D     ++  EIN  PG+T  S+F +    AGYSF+E++
Sbjct: 240 LAIKAYKAFDCKCFGRVDMFVDKYEN-IYLSEINTIPGLTANSLFTKEVKAAGYSFQEIV 298

Query: 290 LWMVEDA 296
             +V+ A
Sbjct: 299 KLLVKLA 305


>gi|302865483|ref|YP_003834120.1| D-alanine/D-alanine ligase [Micromonospora aurantiaca ATCC 27029]
 gi|302568342|gb|ADL44544.1| D-alanine/D-alanine ligase [Micromonospora aurantiaca ATCC 27029]
          Length = 377

 Score =  303 bits (776), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 99/359 (27%), Positives = 166/359 (46%), Gaps = 62/359 (17%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           + V+ GG S+E EVS +S    A AL + G +V  + + R+ G+ L              
Sbjct: 7   IGVVFGGPSAEHEVSCASALGVARALAEQGHRVVALGITRTGGIRLLPEPVLAQHLGTVT 66

Query: 47  -------------------------------------AHLKPDLAFNVLHGNFGEDGLVQ 69
                                                 H + D+ F VLHG +GEDG+VQ
Sbjct: 67  AGRAIDDRLPVTGPAVELRRGTTTGTVAVGAADAPATVHAELDVVFPVLHGPYGEDGVVQ 126

Query: 70  AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ 123
            +LE L +PY   GILASA+ MDK+  K+ + +  VP  P +  +  T  +         
Sbjct: 127 GLLESLGVPYVGCGILASAVGMDKVAMKRALRAEDVPTTPYVWFDEPTWRAASDPEKLVV 186

Query: 124 -ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            +  P  +KP + GSS+GI  +     +   +    ++ H   +L+EQ V G EL CGV+
Sbjct: 187 GLRGPLFVKPARMGSSIGISRVADGDDLVAAV--EEAFRHDHVVLVEQGVTGRELECGVL 244

Query: 183 GDASLDVTEIAVPK--SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           G    + + +   +    ++ Y  KY       ++PA +P ++ + ++ L+  A  AIG 
Sbjct: 245 GGWQPEASAVGEVRVAGGWFDYRQKYFGDADPMIVPAPLPDEVTERIRELSVRAFTAIGG 304

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
            G++R DFL+D  +  +F  E+N  PG T  S++P++ A +G ++ E++  +V  A   
Sbjct: 305 WGLARVDFLYDETTSDLFVNELNTLPGFTAHSMYPKVWAESGVAYPEVVDRLVALAFTR 363


>gi|323142001|ref|ZP_08076852.1| D-ala D-ala ligase N-terminal domain protein [Phascolarctobacterium
           sp. YIT 12067]
 gi|322413533|gb|EFY04401.1| D-ala D-ala ligase N-terminal domain protein [Phascolarctobacterium
           sp. YIT 12067]
          Length = 315

 Score =  302 bits (775), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 99/309 (32%), Positives = 163/309 (52%), Gaps = 16/309 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-SVGLVLAHLKPDLAFNVLH 59
           +AV++GG SSE E+S  +G A A+AL + G+   +++++  ++   L  +   + FN +H
Sbjct: 9   VAVVLGGPSSEAEISRVTGGAIANALREKGYNAKEVELNPSNLINELRDMNAKVVFNAVH 68

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G +GEDG +Q+ILE   IPYT  G+LASA+SMDK  +K+ + S G+P  P +++N+    
Sbjct: 69  GMYGEDGRLQSILEAAGIPYTGCGVLASAVSMDKSATKRYLQSAGIPTAPCMIINKRDAG 128

Query: 120 SQHLI--------SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
               +          P VIK    GSS+G+++ K  Q +   L    ++ + + +L E+ 
Sbjct: 129 DLQTLAEKIISEFGLPVVIKAATQGSSIGVVIPKTAQEVVPAL--EEAFKYSENVLAEKC 186

Query: 172 VDGIELTCGVMGD----ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227
           + G ELT  +M +      L V  IA P S  Y +  KY+   + +  PA         +
Sbjct: 187 IKGKELTISIMEENGEPKPLPVIWIA-PHSGAYDFHSKYTKGATDYHCPAPFDEKTTAYI 245

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287
           Q++A   ++ +G  G++R D +        + LE N  PGMT  S+ P+ AA  G SF E
Sbjct: 246 QKIAVETYKLLGLSGVARVDAMLGDEDGVAYVLEANTVPGMTATSLVPKAAAAVGISFPE 305

Query: 288 LLLWMVEDA 296
           L   ++  A
Sbjct: 306 LCEKILLSA 314


>gi|295104375|emb|CBL01919.1| D-alanine--D-alanine ligase [Faecalibacterium prausnitzii SL3/3]
          Length = 364

 Score =  302 bits (775), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 89/349 (25%), Positives = 159/349 (45%), Gaps = 55/349 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           +A+L GG+SSE EVS  S       ++ + ++V  + + +    +               
Sbjct: 9   VALLFGGMSSEHEVSCVSVGNFVRNIDRSKYEVLTVGITKEGRWLYTEATAEQMADGSWE 68

Query: 46  ---------------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIP 78
                                      +  +  D+   VLHG +GEDG VQ +LEL  I 
Sbjct: 69  ELPGNMACVISPDRADHGMILFTPDGRVEKMHLDVVIPVLHGLWGEDGTVQGLLELAGIA 128

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYV 129
           Y   G+LAS++ MDK  +  +  + GVP    +  NR+ ++          +  +  P  
Sbjct: 129 YVGCGVLASSVCMDKAVANALFEANGVPHTKWVAANRWEIEKDLEGVCAGVEQKLGWPVF 188

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           +KP   GSS+GI  +   + +   +  +    +  +++ E +VDG E+ C V+G      
Sbjct: 189 VKPANAGSSVGISKVSSQEELKAAIALAL--ENDRKVVFEAFVDGQEVECAVIGSDPAVA 246

Query: 190 TEIA--VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           T     +  ++FY+Y+ KY +  S  V+PA +P     EV+  A +A+ A+ C G++R D
Sbjct: 247 TRPGEILAGAEFYTYDDKYKNGVSQTVIPAHLPEAKLDEVKTYAAMAYTALNCEGLARCD 306

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           F  +  + +V   EIN  PG T +S++P++  + G    +L+  ++  A
Sbjct: 307 FFVEKNTGRVLINEINTFPGFTAISMYPKLMEHEGLPVPQLIDRLIALA 355


>gi|168070642|ref|XP_001786885.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162660247|gb|EDQ48301.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 327

 Score =  302 bits (775), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 101/306 (33%), Positives = 161/306 (52%), Gaps = 11/306 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGG+SSEREVSL +GK     L+ + ++V  IDV +   L+      D A   LHG
Sbjct: 17  VGVIMGGVSSEREVSLMTGKEIVGRLDPSKYEVLPIDVAKREELIDRVRGIDFALLALHG 76

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG VQ +LE + IPY+ SG+L+S+L MDK  +K+V+ + G+     + ++R     
Sbjct: 77  TFGEDGTVQGVLETMGIPYSGSGVLSSSLCMDKNLTKRVLKAEGIVTPDGVFLDRAMFTD 136

Query: 121 Q------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
                    ++ P  +KP  GGSS+G+  +  D+   L    + ++     +++E  V G
Sbjct: 137 GTWESRLAGLTYPLFVKPNAGGSSIGVQRV--DRQEALRAALAEAFRWDASVVVESMVTG 194

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
            E+TC ++    L V  I    ++++ YE KYS   +    P  +P D+   V+  A   
Sbjct: 195 QEITCPILDGELLPVLGIRSNGAEWFDYEAKYSDGGAEE-RPITLPSDVEARVREAALAC 253

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           ++ + CR  +R D +        + LE+N  PGMT  S+ P  AA AG S+ ELL  ++E
Sbjct: 254 YRVLQCRVYARVDMIL--QDGVPYVLEVNTLPGMTANSLLPRSAAAAGMSYGELLDRIIE 311

Query: 295 DASCLR 300
            +   R
Sbjct: 312 LSLVER 317


>gi|6624709|emb|CAB63849.1| D-ala,D-ala ligase [Streptococcus pneumoniae]
          Length = 347

 Score =  302 bits (775), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 97/334 (29%), Positives = 161/334 (48%), Gaps = 41/334 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKV--------------------------- 33
           + +L GG S+EREVS+ S ++   A++   F V                           
Sbjct: 5   IILLYGGRSAEREVSVLSAESVMRAVDYDRFTVKTFFISQSGDFIKTQEFSHAPGQEDRL 64

Query: 34  ---SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
                ID D+ V     + +  + F VLHG  GEDG VQ  LE+L++PY    IL+S+L+
Sbjct: 65  MTNETIDWDKKVAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLA 124

Query: 91  MDKMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
           MDK+ +K+V+ S G+   P +       V     + +  ++ P   KP   G S+GI   
Sbjct: 125 MDKITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLAYPVFTKPSNMGCSVGISKS 184

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202
           +  + +   L    ++ +  ++L+EQ V+  E+  G++G+  +  T     V    FY Y
Sbjct: 185 ENQEELRQALKL--AFRYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDY 242

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
           + KY     T  +PAKI  D+   +++ A  A +AIG  G+SR +F +     ++F  E+
Sbjct: 243 DAKYIDNKVTMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCNFFYTDK-GEIFLNEL 301

Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           N  PG T  S++P +    G S+ EL+  +V+ A
Sbjct: 302 NTMPGFTQWSMYPLLWENMGISYPELIERLVDLA 335


>gi|254819105|ref|ZP_05224106.1| D-alanyl-alanine synthetase A [Mycobacterium intracellulare ATCC
           13950]
          Length = 381

 Score =  302 bits (775), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 101/360 (28%), Positives = 162/360 (45%), Gaps = 65/360 (18%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +AV+ GG S+E  +S  S  +    L+   F+V  I +      VL    P         
Sbjct: 21  VAVVFGGRSNEHAISCVSAGSILRNLDPERFEVVAIGITPEGSWVLTDGDPAALAITDRR 80

Query: 52  --------------------------------------DLAFNVLHGNFGEDGLVQAILE 73
                                                 D+ F VLHG +GEDG +Q +LE
Sbjct: 81  LPEVTAESGTELALSADPRRGGQLVALPPGAGEVLASVDVVFPVLHGPYGEDGTIQGLLE 140

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN----RFTMDSQHLISPPYV 129
           L  +PY  +G+LASA  MDK  +K++ ++ G+PV    ++     R   +    +  P  
Sbjct: 141 LAGVPYVGAGVLASAAGMDKEFTKKLFAAEGLPVGDYAVLRPSRARLRPEECQRLGLPVF 200

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG--DASL 187
           +KP +GGSS+G+  +     +  D   +++  H  ++++E  + G EL CGV+   D ++
Sbjct: 201 VKPARGGSSIGVSRVASWDQL--DAAVAAARRHDPKVIVEAAIVGRELECGVLEMPDGTV 258

Query: 188 DVT---EIAVP-----KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
           + +   EI V      +  FY +  KY    +   +PAK+  +I   V++LA  A +AI 
Sbjct: 259 EASALGEIRVAGVRGREDSFYDFATKYLDDAAELDVPAKVDDEIADTVRQLAVRAFKAID 318

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
           C+G++R DF            EIN  PG T +S++P M A +G  +  LL  MVE A   
Sbjct: 319 CQGLARVDFFLTEDG--PVLNEINTMPGFTTISMYPRMWAASGVDYPTLLATMVETALAR 376


>gi|182626611|ref|ZP_02954357.1| D-alanine--D-alanine ligase [Clostridium perfringens D str.
           JGS1721]
 gi|177908091|gb|EDT70664.1| D-alanine--D-alanine ligase [Clostridium perfringens D str.
           JGS1721]
          Length = 301

 Score =  302 bits (775), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 95/299 (31%), Positives = 161/299 (53%), Gaps = 9/299 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGGISSERE+S+ SG +   AL+   ++   I ++    L+      D A   LHG
Sbjct: 3   VGVIMGGISSEREISIQSGNSVVHALDKDKYEAIPIVLNEKEDLIEKVKGIDFALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL---VNRFT 117
            FGEDG VQ++L+ L IP++  G L+SA+ MDK  +K++++   V      +   V+   
Sbjct: 63  KFGEDGTVQSVLKTLGIPFSGCGPLSSAICMDKDMTKRILAFGNVRTARWEMVSSVDEID 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            +    +  P  IKP  GGSS+   +++  +++   +L++    +  +++IE+Y+ G E+
Sbjct: 123 YEKIENLGYPVFIKPNNGGSSVATTLVESKEAVKDAVLEAL--KYDTEVMIEEYIKGDEI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC ++    L V  I  PK  F+    KY    +   +  K+  D++KEV+++A   ++ 
Sbjct: 181 TCPIIDGKMLPVLAIK-PKGKFFDIASKYEDGGADEFI-VKLNEDLHKEVEKMALETYKL 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           + C   +R D L        + LE+N  PGMT  S+FP+ AA    SF ELL  ++E +
Sbjct: 239 LKCDVYARVDMLV--KDNIPYVLEVNTLPGMTKNSLFPKSAAGINMSFEELLDTIIEKS 295


>gi|149021235|ref|ZP_01835481.1| D-alanylalanine synthetase [Streptococcus pneumoniae SP23-BS72]
 gi|147930336|gb|EDK81320.1| D-alanylalanine synthetase [Streptococcus pneumoniae SP23-BS72]
          Length = 347

 Score =  302 bits (775), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 98/334 (29%), Positives = 160/334 (47%), Gaps = 41/334 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKV--------------------------- 33
           + +L GG S+EREVS+ S ++   A+    F V                           
Sbjct: 5   IILLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDFIKTQEFSHAPGQEDRL 64

Query: 34  ---SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
                ID D+ V     + +  + F VLHG  GEDG VQ  LE+L++PY    IL+S+L+
Sbjct: 65  MTNETIDWDKKVAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLA 124

Query: 91  MDKMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
           MDK+ +K+V+ S G+   P +       V     + +  +  P   KP   GSS+GI   
Sbjct: 125 MDKITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLVYPVFTKPSNMGSSVGISKS 184

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202
           +  + +   L    ++ +  ++L+EQ V+  E+  G++G+  +  T     V    FY Y
Sbjct: 185 ENQEELRQALKL--AFRYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDY 242

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
           + KY     T  +PAKI  D+   +++ A  A +AIG  G+SR DF +     ++F  E+
Sbjct: 243 DAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDFFYTDK-GEIFLNEL 301

Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           N  PG T  S++P +    G S+ +L+  +V+ A
Sbjct: 302 NTMPGFTQWSMYPLLWDNMGISYPKLIERLVDLA 335


>gi|168215133|ref|ZP_02640758.1| D-alanine--D-alanine ligase [Clostridium perfringens CPE str.
           F4969]
 gi|170713457|gb|EDT25639.1| D-alanine--D-alanine ligase [Clostridium perfringens CPE str.
           F4969]
          Length = 301

 Score =  302 bits (774), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 95/299 (31%), Positives = 162/299 (54%), Gaps = 9/299 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGGISSERE+S+ SG +   AL+   ++   I ++    L+      D A   LHG
Sbjct: 3   VGVIMGGISSEREISIQSGNSVVHALDKDKYEAIPIVLNEKEDLIEKVKGIDFALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL---VNRFT 117
            FGEDG VQ++L+ L IP++  G L+SA+ MDK  +K++++   V     ++   V+   
Sbjct: 63  KFGEDGTVQSVLKTLGIPFSGCGPLSSAICMDKDMTKRILAFGNVRTARWVMVSSVDEID 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            +    +  P  IKP  GGSS+   +++  +++   +L++    +  +++IE+Y+ G E+
Sbjct: 123 YEKIENLCYPVFIKPNNGGSSVATTLVESKEAVKDAVLEAL--KYDTEVMIEEYIKGDEI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC ++    L V  I  PK  F+    KY    +   +  K+  D++KEV+++A   ++ 
Sbjct: 181 TCPIIDGKMLPVLAIK-PKGKFFDIASKYEDGGADEFI-VKLNEDLHKEVEKMALETYKL 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           + C   +R D L        + LE+N  PGMT  S+FP+ AA    SF ELL  ++E +
Sbjct: 239 LKCDVYARVDMLV--KDNIPYVLEVNTLPGMTKNSLFPKSAAGINMSFEELLDTIIEKS 295


>gi|254383276|ref|ZP_04998629.1| D-alanylalanine synthetase [Streptomyces sp. Mg1]
 gi|194342174|gb|EDX23140.1| D-alanylalanine synthetase [Streptomyces sp. Mg1]
          Length = 385

 Score =  302 bits (774), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 102/363 (28%), Positives = 159/363 (43%), Gaps = 71/363 (19%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +AV+ GG SSE  +S+ +  A   +++ + ++V  I +       L   +P         
Sbjct: 19  VAVVFGGRSSEHAISVVTAGAVLRSIDRSKYEVLPIGITTDGRWALTADEPSRMAIADRK 78

Query: 52  -----------------------------------------DLAFNVLHGNFGEDGLVQA 70
                                                    D+ F VLHG +GEDG +Q 
Sbjct: 79  LPSVDDLADSEDGAVVLSVDPANREVVYTEPGAVPKALGEVDVVFPVLHGPYGEDGTLQG 138

Query: 71  ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM------------ 118
           +LEL  IPY  SG+LASA+  DK   K+V +S G+ V P + V                 
Sbjct: 139 LLELAGIPYVGSGVLASAVGQDKDYMKRVFTSFGLNVGPYLTVRPREWTRDADAARGRIL 198

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           D       P  IKP + GSS+GI  +  D    LD     +  H  ++++E  + G E+ 
Sbjct: 199 DFAEEHGWPLFIKPARAGSSIGITKV--DDVSGLDEAVREAQRHDPKIIVEARLRGREIE 256

Query: 179 CGVMG-----DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           CGV+       AS+      V   DFY +E KY   +++ ++PA +  +   EV+RLA  
Sbjct: 257 CGVLEFEDGPRASVPAEIPPVSSHDFYDFEAKY-IDSASGIVPAPLTPEQTAEVRRLAVE 315

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           A +A  C G+ R+DF            EIN  PG TP+S++P M   +G  ++EL+  ++
Sbjct: 316 AFEAASCEGLVRADFFLTE-DGTFVINEINTMPGFTPISMYPRMWQESGVEYQELVDLLI 374

Query: 294 EDA 296
           + A
Sbjct: 375 QAA 377


>gi|51243910|ref|YP_063794.1| D-alanyl-D-alanine ligase [Desulfotalea psychrophila LSv54]
 gi|81643437|sp|Q6ASD8|DDL_DESPS RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|50874947|emb|CAG34787.1| probable D-alanyl-D-alanine ligase [Desulfotalea psychrophila
           LSv54]
          Length = 322

 Score =  302 bits (774), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 107/303 (35%), Positives = 159/303 (52%), Gaps = 11/303 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLA-HLKPDLAFNVLH 59
           +A++ GG S EREVSL+        L+   + VS+ D    +  + A     D AF +LH
Sbjct: 11  IALIAGGTSGEREVSLTGADGVERILDKEKYLVSRYDSATDLPRLAADAASIDFAFILLH 70

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT-- 117
           G  GEDG +Q  L+LL IPY  SG+L SAL+MDK  +K+   +  +PV     +      
Sbjct: 71  GLHGEDGTIQGFLDLLGIPYQGSGVLGSALAMDKDLAKEFYYNAELPVADWHTIAAGDFF 130

Query: 118 --MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175
              +    +  P V+KP   GSS+GI +   ++ +   +  +   +    +++EQ++ G 
Sbjct: 131 YSEELIEDLGLPLVVKPACAGSSIGISLAHTEEELLAGINHARDCS-AGAIMVEQFIKGR 189

Query: 176 ELTCGVMGD---ASLDVTEIAV-PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           ELTC V+G+    +L V EI    K  F+ YE KY    S  + PA I   + ++VQ  A
Sbjct: 190 ELTCAVLGNDDLQALPVLEIVPGDKYAFFDYEAKYQPGASEEICPALIADALREQVQDHA 249

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             AHQA+  RG SR+DF++     K++ LE N  PGMT  SI P+ AA  G  F  LL  
Sbjct: 250 IRAHQALRLRGYSRTDFIY-GEDGKLYLLETNTIPGMTETSILPQEAAATGMDFPSLLDT 308

Query: 292 MVE 294
           ++E
Sbjct: 309 LIE 311


>gi|118594415|ref|ZP_01551762.1| D-alanylalanine synthetase [Methylophilales bacterium HTCC2181]
 gi|118440193|gb|EAV46820.1| D-alanylalanine synthetase [Methylophilales bacterium HTCC2181]
          Length = 302

 Score =  302 bits (774), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 97/300 (32%), Positives = 152/300 (50%), Gaps = 8/300 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+ERE+SL SG+A  ++L  +      +D        LA       F  LHG
Sbjct: 9   VAVLLGGESNEREISLQSGQAVLTSLLQSKVNAFGLDPKFEPLSKLAE--CSRVFICLHG 66

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q+ L+ ++IPYT SG  AS L MDK+ SK +     +     + +       
Sbjct: 67  KDGEDGKIQSYLDDIKIPYTGSGFHASKLGMDKLLSKNIWKKLKINTPNFVRLEEGMTYD 126

Query: 121 Q--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           +    +   + IK    GSS+GI  + K Q         S++   + ++ E  + G E T
Sbjct: 127 EVCKNLGSSFFIKAANSGSSIGISKVTKPQQYQAAF--ESAYKVDNTVIAEMMIFGEEFT 184

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             ++  + L + EI  PK+DFY YE KY   ++  + PAK+   +  ++ +L   A  A+
Sbjct: 185 LPILDSSPLSIVEIR-PKTDFYDYEAKYHRDDTEFICPAKLDKVLVDKINQLGMKAFNAL 243

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           GC G  R DF+ +    +VF +E+N  PGMT  S+ P  A  +G SF  L+L +++ A  
Sbjct: 244 GCSGWGRVDFMINNQ-NEVFIIEVNTIPGMTSHSLVPMSAKQSGLSFDSLVLKVLDTAYA 302


>gi|306835963|ref|ZP_07468955.1| D-alanine-D-alanine ligase [Corynebacterium accolens ATCC 49726]
 gi|304568129|gb|EFM43702.1| D-alanine-D-alanine ligase [Corynebacterium accolens ATCC 49726]
          Length = 355

 Score =  302 bits (774), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 96/351 (27%), Positives = 158/351 (45%), Gaps = 56/351 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50
           +AVL GG S+E  VS  S  A    L+   F+V  I + R         +          
Sbjct: 7   VAVLYGGRSTEHSVSCVSAGAIMKHLDPEKFEVVPIGITREGTWTPGDTEGLEIVDGVMP 66

Query: 51  -------------------------------PDLAFNVLHGNFGEDGLVQAILELLEIPY 79
                                           D+ F +LHG +GEDG +Q + EL  IPY
Sbjct: 67  EVKHGTELALSADPTRKGEIRTISDGSLYAHVDVIFPILHGPYGEDGTMQGLFELSGIPY 126

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFTMDSQHLISPPYVIKPLKGG 136
              G+LAS++ MDK  +K+++S+ G+PV P ++V      T + +  +  P   KP +GG
Sbjct: 127 VGPGVLASSVGMDKEFTKKILSAAGLPVAPEVIVQGRTELTAEEKDRLGLPVFAKPARGG 186

Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM--GDASLDVTEIAV 194
           SS+G+  +      P  +  +      D++L+E  + G E+  GV+   D  L  +  A+
Sbjct: 187 SSIGVSKVSDWADFPEAVRIAL--EDDDKILVEPEIVGREVEVGVLQYPDGRLIASVPAL 244

Query: 195 ------PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                     FY +E KY     T  +PA  P ++  +++ +A  A +A+ C G+SR DF
Sbjct: 245 LKGIDDSDEGFYGFETKYLDNVVTAQIPAPFPEELTAQLRDMAIRAFKALNCTGLSRVDF 304

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
                   ++  E+N  PG TP+S++P++ A +G  +  LL  ++  A   
Sbjct: 305 FVTEEG--LYINEVNTLPGFTPISMYPQVLAASGVDYPTLLEVLIASAEAR 353


>gi|237736134|ref|ZP_04566615.1| D-alanine-D-alanine ligase [Fusobacterium mortiferum ATCC 9817]
 gi|229421687|gb|EEO36734.1| D-alanine-D-alanine ligase [Fusobacterium mortiferum ATCC 9817]
          Length = 288

 Score =  302 bits (774), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 111/296 (37%), Positives = 162/296 (54%), Gaps = 14/296 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59
           +AV MGGISSEREVSL SG A   +L+  G+    +DV  +++       + DLA+   H
Sbjct: 3   IAVFMGGISSEREVSLRSGAAILESLQAQGYDAYGVDVTEKNLVSAFTENEYDLAYIAFH 62

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G +GE+G  Q +L++L  PYT SG + SA++MDK  +K V +S G+    +         
Sbjct: 63  GGYGENGTFQGLLDMLGKPYTGSGAMESAITMDKAYTKAVANSVGIKTAKTY------NC 116

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
            + +   P V+KP + GSS+GI      + +   L        G + LIE+ + G ELT 
Sbjct: 117 VEEIKDFPVVVKPSRDGSSVGIYFCNTQEEVREALRALE----GRKPLIEEMIQGEELTV 172

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
           GV+    L V  I +PK+ FY YE KY++  S H  PAKI    Y +    A   H  IG
Sbjct: 173 GVLNGEGLGVLRI-IPKNKFYDYESKYAAGGSIHEYPAKIDKAAYDKAMENAVKIHNVIG 231

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
            +GISRSDF+      +V++LE+N  PGMT  S+ P++    GY+F +L+  MV+ 
Sbjct: 232 LKGISRSDFML--KDGEVYFLEVNTCPGMTKTSLIPDLGTLKGYTFDDLVKIMVDT 285


>gi|303228450|ref|ZP_07315283.1| D-ala D-ala ligase N-terminal domain protein [Veillonella atypica
           ACS-134-V-Col7a]
 gi|303230853|ref|ZP_07317600.1| D-ala D-ala ligase N-terminal domain protein [Veillonella atypica
           ACS-049-V-Sch6]
 gi|302514613|gb|EFL56608.1| D-ala D-ala ligase N-terminal domain protein [Veillonella atypica
           ACS-049-V-Sch6]
 gi|302516952|gb|EFL58861.1| D-ala D-ala ligase N-terminal domain protein [Veillonella atypica
           ACS-134-V-Col7a]
          Length = 310

 Score =  302 bits (774), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 107/304 (35%), Positives = 167/304 (54%), Gaps = 12/304 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59
           + VLMGG S+E EVS  +G A A AL   G+ VS ++++ R+V   + +LK D+ FN +H
Sbjct: 6   IIVLMGGPSAEAEVSRRTGAAIAEALISKGYHVSTLELNPRTVLQDIENLKGDVVFNAIH 65

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN----- 114
           G +GEDG +Q  LE+ EIPYT SGI+A ++ M+K  SK V     +P   SI  N     
Sbjct: 66  GRYGEDGALQGALEMAEIPYTGSGIMAHSVGMNKKVSKDVFKGAHIPTAESISYNGNLQS 125

Query: 115 --RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                 D +   S P V+KP   GSS+G+ ++K++  +   +  + +  +   L++EQY+
Sbjct: 126 KEDIIKDIESKFSLPVVLKPATQGSSIGVTIVKEENQLAKAV--TEALTYDPILVVEQYL 183

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
           +G E T  V+   +L + EI  P S  Y Y  KY++  + +++PA I  D+ KE+Q +  
Sbjct: 184 NGREFTVSVLDGKALAIIEIR-PHSGEYDYASKYTAGATDYLVPAPISADMTKEMQAIGE 242

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           L ++ +   G  R D + D     ++ LE N  PGMT  S+ P+ A   G  F EL   +
Sbjct: 243 LVYREVQASGAIRVDVMTDDKDN-MYVLEYNTIPGMTATSLVPKAAKEVGIDFPELCEKI 301

Query: 293 VEDA 296
           +  A
Sbjct: 302 LLTA 305


>gi|258546155|ref|ZP_05706389.1| D-alanine--D-alanine ligase B [Cardiobacterium hominis ATCC 15826]
 gi|258518580|gb|EEV87439.1| D-alanine--D-alanine ligase B [Cardiobacterium hominis ATCC 15826]
          Length = 306

 Score =  302 bits (774), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 107/298 (35%), Positives = 157/298 (52%), Gaps = 8/298 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-DRSVGLVLAHLKPDLAFNVLH 59
           +AVL GG SSEREVSLSSG A   AL  +G     +D  D      L       AF VLH
Sbjct: 8   VAVLYGGTSSEREVSLSSGAAVHEALVTSGVDAHLLDTRDHQALFNLKGQGFARAFIVLH 67

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G  GEDG VQAIL+   IPYT SG+LA AL+MDK+ +K+V  + G+PV P ++++  T  
Sbjct: 68  GRGGEDGQVQAILDWQGIPYTGSGVLACALAMDKVLTKRVWQTFGLPVKPDLVIDAATTY 127

Query: 120 SQ---HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
           ++    L    + IKP   GSS+G+  +     +     ++      ++++ E +V G E
Sbjct: 128 AELVAALGGSHFAIKPALEGSSVGVSRVGNQAELEAAYQKAG--GIREKIMAEPWVTGRE 185

Query: 177 LTCGVMGDASLDVTEIAVPKSD-FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
           LT  V+G   L   E+       FY Y+ KY + ++ +  P  I   +  +++ L   A 
Sbjct: 186 LTYPVIGGRVLPGIEVTASAEHLFYDYDAKYLAEDTRYRCPPPIDAALDGQLRELTRRAF 245

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            AIG +G +R DF+ D    + + LEIN+ PGMT  S+ P  A   G  F  L+  ++
Sbjct: 246 DAIGAKGWARVDFILDG-DNRPWILEINMVPGMTSHSLVPLAAREDGMDFVALVRQIL 302


>gi|257438472|ref|ZP_05614227.1| D-alanine--D-alanine ligase A [Faecalibacterium prausnitzii A2-165]
 gi|257199051|gb|EEU97335.1| D-alanine--D-alanine ligase A [Faecalibacterium prausnitzii A2-165]
          Length = 365

 Score =  302 bits (774), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 95/349 (27%), Positives = 157/349 (44%), Gaps = 55/349 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44
           + VL GG+SSE EVS  S       L+ A ++V  + + R                    
Sbjct: 10  VVVLFGGMSSEHEVSRVSAGTFVDNLDRARYEVLTVGITREGRWLCTEATSAQMADGSWE 69

Query: 45  --------------------------VLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIP 78
                                      +  L  D+    LHG +GEDG VQ +LEL  IP
Sbjct: 70  ELPGNMPCVISPDRADHGMILFTPSGQVEKLHVDVVIPALHGLWGEDGTVQGLLELAGIP 129

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ---------HLISPPYV 129
           Y   G+LASA+ MDK  +  +  + G+P    +   R+ ++S            +  P  
Sbjct: 130 YVGCGVLASAVCMDKAVANALFDAAGIPHTKWLSACRWEIESDLDGVCDGAIAKLGWPIF 189

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           +KP   GSS+GI        +   +  +   +H  +++ E +VDG E+ C V+G      
Sbjct: 190 VKPANAGSSVGITKAHDRDELKQAIALALENDH--KVVFEAFVDGHEVECAVIGSDPAVA 247

Query: 190 TEIA--VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           T     +  ++FY+Y+ KY +  S  V+PA++  +   EV+  A +A+ A+ C G++R D
Sbjct: 248 TRPGEILAGAEFYTYDDKYKNGVSQVVIPARLSEEKLDEVKTYAAMAYTALNCEGLARCD 307

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           F  +  + +V   EIN  PG TP+S++P++  + G     L+  ++E A
Sbjct: 308 FFVEHGTDRVMINEINTFPGFTPISMYPKLMEHEGTPVPALIDHLIELA 356


>gi|159036808|ref|YP_001536061.1| D-alanine--D-alanine ligase [Salinispora arenicola CNS-205]
 gi|157915643|gb|ABV97070.1| D-alanine--D-alanine ligase [Salinispora arenicola CNS-205]
          Length = 360

 Score =  302 bits (774), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 98/354 (27%), Positives = 162/354 (45%), Gaps = 62/354 (17%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL--------------- 46
           AV+ GG S E  +S  S  +  +AL+   ++V  + + R+   VL               
Sbjct: 2   AVVFGGRSPEHGISCVSAGSVLAALDPDEYEVVPVGISRAGQWVLTGGDSSQLAITDRRL 61

Query: 47  --------------------------------AHLKPDLAFNVLHGNFGEDGLVQAILEL 74
                                           A    D+ F VLHG +GEDG +Q +LE+
Sbjct: 62  PEVTAESGTAVVLNADPSSGGLLVLDPAEGSRALADVDVVFPVLHGAYGEDGTIQGMLEM 121

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF---TMDSQHLISPPYVIK 131
             IPY  + + ASA +MDK  +K++ ++ G+PV P  ++      T   +  +  P  +K
Sbjct: 122 AGIPYVGANVFASAAAMDKEFTKKLCAAEGIPVGPYAVLRSGMTLTEQDKQRLGLPVFVK 181

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P + GSS GI  +     +  D   +++     ++L+E  V G E+ CGV+   +  V E
Sbjct: 182 PSRAGSSFGITRVTDWADL--DDAVANARKIDPKVLVESAVIGREIECGVLEAEAGGVPE 239

Query: 192 -------IAVPKSDFYSYELKYSSLNS--THVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
                    V   DFY +E KY   ++   + +PA +P  + ++VQ  A  A  A+ C G
Sbjct: 240 ASALAEVRVVGDYDFYDFEAKYIDADAACEYDIPADLPERVTRQVQEYAVRAFTALDCAG 299

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           ++R+DF   P    V+  E+N  PG TP S+FP M A +G  +++L+  ++  A
Sbjct: 300 LARADFFVTP-ELDVYLNEVNTMPGFTPTSMFPRMWAASGLEYQKLVNRLIRTA 352


>gi|114777859|ref|ZP_01452790.1| D-alanine--D-alanine ligase [Mariprofundus ferrooxydans PV-1]
 gi|114551850|gb|EAU54390.1| D-alanine--D-alanine ligase [Mariprofundus ferrooxydans PV-1]
          Length = 307

 Score =  302 bits (773), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 109/296 (36%), Positives = 152/296 (51%), Gaps = 12/296 (4%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGN 61
            VLMGG S+EREVSL SG A   AL  AG     ID+ ++    +A    D AF  LHG 
Sbjct: 15  GVLMGGTSAEREVSLRSGAAVLDALRAAGVDAVGIDLQQNWADQIAKAAIDTAFIALHGT 74

Query: 62  FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ 121
            GEDG VQ +LE++ IPYT S ++ASAL M+K   KQV+   G+     I +     +  
Sbjct: 75  LGEDGCVQGLLEIMGIPYTGSHVMASALCMNKRLCKQVLGQAGLSTPMDIRI-----EVT 129

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
                P  +KP+  GSS+G+  I   Q      +QS +       + E  V+G+E+   V
Sbjct: 130 GPERYPVFVKPVAEGSSVGLHRISSQQEWQALNIQSPA-----AWMAEMPVNGVEIAVSV 184

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241
           +   +L   E+A PKS  Y Y  KY+   + +  PA++P++  +     A  A  A GC 
Sbjct: 185 LAGVALMPVEVA-PKSGVYDYASKYTVGATEYFCPARLPMETVRYCMDCAEKAVAACGCT 243

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           G  R D +      +   LEIN  PGMT  S+ P+ AA AG  F+ L L ++E AS
Sbjct: 244 GAPRVDMIV-GSGGEAVILEINTLPGMTATSLLPKAAAVAGIDFQTLCLRILETAS 298


>gi|88856723|ref|ZP_01131378.1| D-alanine:D-alanine ligase [marine actinobacterium PHSC20C1]
 gi|88814020|gb|EAR23887.1| D-alanine:D-alanine ligase [marine actinobacterium PHSC20C1]
          Length = 372

 Score =  302 bits (773), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 98/355 (27%), Positives = 159/355 (44%), Gaps = 65/355 (18%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50
           + +L GG SSE  +S ++     SA++   + V  + + R     L              
Sbjct: 15  VVLLFGGRSSEHSISCATAGGVLSAIDRDKYTVIPVGITRDGAFTLQPDDAEAFRLNPEA 74

Query: 51  ------------------------------------PDLAFNVLHGNFGEDGLVQAILEL 74
                                                D+ F +LHG FGEDG VQ ++EL
Sbjct: 75  MPEIVDNGTRVRWPETSNSRELTVTDSAGQTRSLGDVDVVFPILHGPFGEDGTVQGLIEL 134

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--------DSQHLISP 126
             +PY  +G+LAS++ M+K  +K  + + GV V P + ++                 +  
Sbjct: 135 TGLPYVGNGVLASSMGMNKHFTKLALEAAGVAVAPWVTISAVQWSRHPDVWRQRASSLGL 194

Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM---- 182
           P  +KP + GSS+G+  +     +  D   ++++      L+EQ + G E+ CGV+    
Sbjct: 195 PVFVKPARAGSSVGVTKVTHADEL--DAALATAFAEDSTALVEQAMTGREIECGVLSGRD 252

Query: 183 -GDASLDV-TEIAVPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
            GD  + V  EI V   DFY +E KY     +  + PA++      ++QR A  A +AIG
Sbjct: 253 GGDTRVSVAGEIVVTGRDFYDFEAKYLDVAAAELICPAELHDGELWQMQRTAARAFEAIG 312

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             G++R DF FD    +    EIN  PG TP+S+FP+  A +G S+ EL+  ++E
Sbjct: 313 GAGLARVDFFFD--GAEFVVNEINTLPGFTPISMFPKCWAASGMSYPELIDELIE 365


>gi|297156912|gb|ADI06624.1| D-alanyl-alanine synthetase A [Streptomyces bingchenggensis BCW-1]
          Length = 390

 Score =  302 bits (773), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 96/363 (26%), Positives = 156/363 (42%), Gaps = 71/363 (19%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD-------- 52
           +AV+ GG SSE  +S+ +  A   A++   + V  I +       L   +PD        
Sbjct: 24  VAVVFGGRSSEHTISVVTAGAVLRAIDREKYDVLPIGITGDGRWALTADEPDRMAIAGRV 83

Query: 53  ------------------------------------------LAFNVLHGNFGEDGLVQA 70
                                                     + F +LHG +GEDG +Q 
Sbjct: 84  LPSVEGLAESEDGSVLLPVEQGNREVVYAEPGAVPKALGEVDVVFPMLHGPYGEDGTLQG 143

Query: 71  ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI------ 124
           +LEL  +PY  +G+LASA+ MDK   K+V  S G+PV P  ++     +           
Sbjct: 144 LLELSGVPYVGAGVLASAVGMDKEYMKRVFVSFGLPVGPYEVIRPREWEKDPAAARKKIV 203

Query: 125 ------SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                   P  +KP + GSS+GI  +     +   +    +  H  ++++E  + G E+ 
Sbjct: 204 EFAGEHGWPVFVKPARAGSSIGISKVDDISGLEEAI--EEARRHDPKIVVEALLRGREIE 261

Query: 179 CGVMG-----DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           CGV+       AS+      V   DFY +E KY   ++  V+PA +  +  + V+ LA  
Sbjct: 262 CGVLEFEDGPRASVPAEIPPVSTHDFYDFEAKY-IDSADGVVPAPLTEEQTERVRELAVR 320

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           A +A  C G+ R+DF       +    EIN  PG TP+S++P M   +G S+ EL+  ++
Sbjct: 321 AFEAASCEGLVRADFFLLDS-GEFVINEINTMPGFTPISMYPRMWQESGVSYPELVDRLI 379

Query: 294 EDA 296
           + A
Sbjct: 380 QAA 382


>gi|315641806|ref|ZP_07896810.1| D-alanine-D-alanine ligase [Enterococcus italicus DSM 15952]
 gi|315482481|gb|EFU73020.1| D-alanine-D-alanine ligase [Enterococcus italicus DSM 15952]
          Length = 363

 Score =  302 bits (773), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 82/337 (24%), Positives = 149/337 (44%), Gaps = 46/337 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---LAHLKPD----- 52
           + +L GG S+E EVS+ S  +   A+    ++V  + + +    V   L   KP+     
Sbjct: 11  IILLYGGKSAEHEVSVLSAFSVLQAIYYEYYQVQLVFISKKGEWVKGPLLTEKPESKDIL 70

Query: 53  ------------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
                                   + F +LHG  GEDG +Q  LE + +PY  +G++ SA
Sbjct: 71  QLTWKGEQASAKEIHPSEIKQEEAIVFPLLHGPNGEDGTIQGFLETIGMPYVGAGVVTSA 130

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSL 139
             MDK+ +K ++ + G+P  P + V +              +  +  P  +KP   GSS+
Sbjct: 131 CGMDKIMTKYILQAAGIPQVPYVPVLKHQWKENPKQVFEQCEGSMLYPMFVKPANMGSSV 190

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE--IAVPKS 197
           GI   +  + +   L    ++ +  + +IEQ ++  E+   ++G+  +  T     V   
Sbjct: 191 GISKAENREELQHAL--EEAYQYDTRAVIEQGIEAREIEVAILGNEDVRTTMAGEIVKDV 248

Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
            FY Y  KY        +PA +P ++  + Q  A  A+  +G  G+SR DF       ++
Sbjct: 249 AFYDYNSKYIDNKIEMQIPASVPDEVQVKAQEYAKKAYTMLGGSGLSRCDFFLTSK-NEL 307

Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           F  E+N  PG T  S++P +    G  + +L+  +++
Sbjct: 308 FLNELNTMPGFTQFSMYPSLWEQTGLKYGDLIEELIQ 344


>gi|227495857|ref|ZP_03926168.1| D-alanine--D-alanine ligase [Actinomyces urogenitalis DSM 15434]
 gi|226834614|gb|EEH66997.1| D-alanine--D-alanine ligase [Actinomyces urogenitalis DSM 15434]
          Length = 404

 Score =  302 bits (773), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 93/362 (25%), Positives = 159/362 (43%), Gaps = 69/362 (19%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +AV+ GG S E  +S ++     SA++   F V  + +      +L    P         
Sbjct: 37  VAVVFGGRSGEHTISCATAAGVLSAIDRDRFDVLPVGITLDGQWLLVDDDPAALALDESR 96

Query: 52  --------------------------------------DLAFNVLHGNFGEDGLVQAILE 73
                                                 D+   +LHG +GEDG +Q +LE
Sbjct: 97  PPVEITAEGLGRGELAMRLGGGAFTAVTPTGPKVLGEVDVVLPLLHGPYGEDGTIQGMLE 156

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ--------HLIS 125
           +L+IPY   G+LASA  MDK  +K ++++ G+P    ++V+    DS+          ++
Sbjct: 157 MLDIPYVGCGVLASAAGMDKQVTKVLLNAAGIPTAQHVVVHPHRWDSERELILDACEALT 216

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            P  +KP + GSSLGI  +++ + +P  +   ++     ++L+E  V+G E+   V+   
Sbjct: 217 YPLFVKPARAGSSLGITKVERREDLPAAI--EAAREVDPKVLVESGVEGREVEVAVLDGH 274

Query: 186 SLDVTEIAVPK----------SDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
                 +A P            +FY YE KY +      V PA++     + ++  A  A
Sbjct: 275 HGAAPRVAEPGEIVMDASHGAGEFYDYETKYLAHDAVQMVCPARVSHQESELLKETAARA 334

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            +A+G  G+ R DF   P    V   E+N  PG TP S++P M   +G S+ +L+  ++E
Sbjct: 335 FEALGGEGLMRVDFFLTPRGEAV-VNEVNTMPGFTPFSMYPYMWQVSGLSYTDLVSELIE 393

Query: 295 DA 296
            A
Sbjct: 394 LA 395


>gi|317131747|ref|YP_004091061.1| D-alanine/D-alanine ligase [Ethanoligenens harbinense YUAN-3]
 gi|315469726|gb|ADU26330.1| D-alanine/D-alanine ligase [Ethanoligenens harbinense YUAN-3]
          Length = 354

 Score =  302 bits (773), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 95/349 (27%), Positives = 153/349 (43%), Gaps = 56/349 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           +AVL GG+SSE  VSL S  +  + +    F V  I + R     L              
Sbjct: 6   VAVLFGGMSSEHAVSLVSATSVIANIPRDRFDVVMIGITRDGEWRLFEGDVEKLAGSGWE 65

Query: 47  ----------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIP 78
                                         ++ D+ F VLHG  GEDG VQ +L L  IP
Sbjct: 66  SDPSNRPAFIAPDSRVHGIVALSPDGRIETIRLDVVFPVLHGLNGEDGTVQGLLTLARIP 125

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYV 129
           +   G+ ASA+ MDK  +K +  +  +P      V    +           +  +  P  
Sbjct: 126 FVGCGVTASAVCMDKAITKALCDTYQIPQAKWETVRVSDLKDNGKAVVERLEAHLGYPLF 185

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           +KP   GSS+GI      +++   +  ++   H  +L+ E+ V+G E+ C V+G+    V
Sbjct: 186 VKPANAGSSVGISKAADRETLYKAIETAA--THDRKLVFEEAVNGREIECAVLGNEEPVV 243

Query: 190 TEIAV--PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           +      P ++FY Y  KY +  +  V+PA +P D+ + V++ A    + +GCRG++R D
Sbjct: 244 SCCGEIKPCNEFYDYNAKYLAGRTELVIPASLPKDVSERVRQTAMRVFRLLGCRGLTRMD 303

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           F        V   E N  PG T +S++P++    G S+ ELL  ++  A
Sbjct: 304 FFALE-DGTVLLNEPNTIPGFTSISMYPKLFEAGGISYGELLETLLRLA 351


>gi|169630367|ref|YP_001704016.1| D-alanyl-alanine synthetase A [Mycobacterium abscessus ATCC 19977]
 gi|169242334|emb|CAM63362.1| Probable D-alanine--D-alanine ligase DdlA [Mycobacterium abscessus]
          Length = 381

 Score =  302 bits (773), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 97/364 (26%), Positives = 160/364 (43%), Gaps = 69/364 (18%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +A++ GG SSE  +S  S  +    L+ A ++V  + V    G VL    P         
Sbjct: 17  VALVFGGRSSEHAISCVSAGSILRNLDQAVYEVVAVGVTPEGGWVLTDGDPAQLAISDRT 76

Query: 52  ---------------------------------------DLAFNVLHGNFGEDGLVQAIL 72
                                                  D+ F VLHG +GEDG +Q +L
Sbjct: 77  LPQVTDASGTELLLATDPRRAGQLVNVDSSAAGQVLASVDVVFPVLHGPYGEDGTIQGLL 136

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF----TMDSQHLISPPY 128
           EL  +PY  +G+LASA  MDK  +K+++++ G+P+    ++       T+D +  +  P 
Sbjct: 137 ELAGVPYVGAGVLASAAGMDKEFTKKLLAAEGLPIGKYAVIRPRDTTLTLDQREDLGLPV 196

Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM-----G 183
            +KP + GSS G+  +   + +P  +  + +  +  ++++E  + G EL CGV+      
Sbjct: 197 FVKPARAGSSFGVSRVTAWEELPAAI--AHARQYDPKVIVEAAIVGRELECGVLEFPDGD 254

Query: 184 DASLDVTEIAV--------PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
             +  + EI V            FY +E KY    +   +PAK+  D+  +++ LA  A 
Sbjct: 255 TRASVLGEIRVEGVNRDQTAAGAFYDFETKYLDDTAELDVPAKVDDDVSDQIRELAVAAF 314

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           +AI C+G++R DF            EIN  PG T +S++P M    G  +  LL  MV  
Sbjct: 315 RAIDCQGLARVDFFLAEDG--PLINEINTMPGFTTISMYPRMWDATGVDYPTLLDAMVRT 372

Query: 296 ASCL 299
           A   
Sbjct: 373 ALAR 376


>gi|310779638|ref|YP_003967971.1| D-alanine--D-alanine ligase [Ilyobacter polytropus DSM 2926]
 gi|309748961|gb|ADO83623.1| D-alanine--D-alanine ligase [Ilyobacter polytropus DSM 2926]
          Length = 284

 Score =  302 bits (773), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 106/295 (35%), Positives = 167/295 (56%), Gaps = 14/295 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS-VGLVLAHLKPDLAFNVLH 59
           +AV MGG+SSERE+SL +GKA   +L   G+    +D+    +       + DLA+  LH
Sbjct: 3   IAVFMGGVSSEREISLRTGKAILESLIRQGYDAYGVDLKEDNLLTAFTENEYDLAYLALH 62

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G FGEDG +QA+L++++ PYT SG+  SA++MDK  +K +    G+ +  S        D
Sbjct: 63  GEFGEDGRIQAVLDIIKKPYTGSGVTPSAIAMDKNMTKIIAEKAGIRIPKSY------RD 116

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
              +IS P V+KP   GSS+G+ +    + +            G  LLIE++V G ELT 
Sbjct: 117 KSEIISFPVVVKPTTEGSSVGLYICNSIEEVEKAEKN----LMGKSLLIEEFVSGEELTV 172

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
           GV+    L V +I+ PKS  Y ++ KY+   + +  PAK+   +Y+E    +   HQ +G
Sbjct: 173 GVLNGEPLGVLKIS-PKSGLYDFQSKYTVGMTEYEYPAKVSPKVYEEAMIFSKKIHQELG 231

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             G+SRSDF+      K+++LE+N  PGMT  S+ P++A   GY+F +L+  +++
Sbjct: 232 LSGVSRSDFIL--KDDKIYFLEVNTCPGMTETSLVPKLATLKGYTFDDLVKKIIQ 284


>gi|168493572|ref|ZP_02717715.1| D-alanine--D-alanine ligase (D-alanylalanine
           synthetase)(D-Ala-D-Ala ligase) [Streptococcus
           pneumoniae CDC3059-06]
 gi|183576308|gb|EDT96836.1| D-alanine--D-alanine ligase (D-alanylalanine
           synthetase)(D-Ala-D-Ala ligase) [Streptococcus
           pneumoniae CDC3059-06]
          Length = 347

 Score =  302 bits (773), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 98/334 (29%), Positives = 160/334 (47%), Gaps = 41/334 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKV--------------------------- 33
           + +L GG S+EREVS+ S ++   A+    F V                           
Sbjct: 5   IILLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDFIKTQEFSQTPGQEDRL 64

Query: 34  ---SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
                ID D+ V     + +  + F VLHG  GEDG VQ  LE+L++PY    IL+S+L+
Sbjct: 65  MTNETIDWDKQVAPSAIYEEGVVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLA 124

Query: 91  MDKMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
           MDK+ +K+V+ S G+   P +       V     + +  ++ P   KP   GSS+GI   
Sbjct: 125 MDKITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLAYPVFTKPSNMGSSVGISKS 184

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202
           +  + +   L    ++ +  ++L+EQ V+  E+  G++G+  +  T     V    FY Y
Sbjct: 185 ENQEELRQALKL--AFRYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDY 242

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
           + KY     T  +PAKI  D+   +++ A  A +AIG  G+SR DF +     ++F  E+
Sbjct: 243 DAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDFFYTDK-GEIFLNEL 301

Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           N  PG T  S++P +    G S+  L+  +V+ A
Sbjct: 302 NTMPGFTQWSMYPLLWDNMGISYPGLIERLVDLA 335


>gi|300933868|ref|ZP_07149124.1| D-alanyl-alanine synthetase A [Corynebacterium resistens DSM 45100]
          Length = 379

 Score =  301 bits (772), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 98/353 (27%), Positives = 152/353 (43%), Gaps = 60/353 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           +AVL GG SSE  VS  S  A    L+   ++V  + +      V               
Sbjct: 26  VAVLYGGQSSEHSVSCISAGAIMDHLDPERYEVIPVGITPQGAWVPGTVDTSELRADDRE 85

Query: 46  -------------------------------LAHLKPDLAFNVLHGNFGEDGLVQAILEL 74
                                            +   D+ F VLHG  GEDG +Q + EL
Sbjct: 86  MPSVRDRGEHIQLVLGAQTGELRYVSGGHAGRTYAHVDVIFPVLHGQNGEDGTIQGLFEL 145

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFTMDSQHLISPPYVIK 131
             IPY  +G+LASA  MDK  +K++    GVP    +++      T D Q  +  P  +K
Sbjct: 146 AGIPYVGNGVLASAAGMDKEYTKRLAKQAGVPCGEELILAENRELTEDEQQRLGLPVFVK 205

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P +GGSS+GI  +   +     +    +++H +++++E  + G E+ CGV+      V  
Sbjct: 206 PARGGSSIGISKVDTWEDFAHAVEI--AFDHDNKVIVEAMIHGREVECGVLQYPEGSVIA 263

Query: 192 IAVP--------KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
            A             FY ++ KY     T  +PA I  +   EV+RLA    +A+ C G+
Sbjct: 264 SAPAMLEGTEDGDEGFYGFDAKYLDNTVTPSIPAPIGEEATAEVRRLAVRTFEALNCEGL 323

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +R DF       +V   EIN  PG TP+S++P+M    G  + +LL  ++  A
Sbjct: 324 ARVDFFVTDS-GEVILNEINTLPGFTPISMYPQMFIAGGMGYPQLLDILIARA 375


>gi|229826569|ref|ZP_04452638.1| hypothetical protein GCWU000182_01944 [Abiotrophia defectiva ATCC
           49176]
 gi|229789439|gb|EEP25553.1| hypothetical protein GCWU000182_01944 [Abiotrophia defectiva ATCC
           49176]
          Length = 353

 Score =  301 bits (772), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 94/345 (27%), Positives = 160/345 (46%), Gaps = 51/345 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLA------------- 47
           +AV++GG SSE EVSL SG++    ++   + V  I + +    +LA             
Sbjct: 5   LAVIVGGRSSEHEVSLVSGESVIEGIDTDKYDVKIIVISKEGEWLLAPNTEALKDGSWKE 64

Query: 48  --------------------------HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81
                                      L  D  F VLHG +GEDG +Q + EL  IPY  
Sbjct: 65  SKVKAVISPDAKDKALLVFNENGSVEKLAIDAVFPVLHGLYGEDGTIQGLFELAGIPYVG 124

Query: 82  SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI--------SPPYVIKPL 133
            G++ASA+ MDK  +KQVV + G+     + V R  +     +          PY +KP 
Sbjct: 125 CGVIASAVGMDKWYTKQVVDTTGIRQARFVPVYRDELKEMDKVIDKIEKAYPYPYFVKPS 184

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
             GSS G+      + +   LL ++   H  ++L+E+ + G EL C V+G   +  + + 
Sbjct: 185 NAGSSKGVSKAADREGLKKALLLAA--EHDRKILVEETIVGRELECAVLGGFDVKASGVG 242

Query: 194 --VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
             +  ++FY ++ KY++  S  VL  ++P    +E++  A    +A+   G+SR DF  +
Sbjct: 243 EILAAAEFYDFDAKYNNAESKTVLSPELPEGKTEEIREAAVKIFKALDGYGLSRVDFFLE 302

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             + ++ + EIN  PG T +S++P +    G   + L+  ++  A
Sbjct: 303 NDTNEIVFNEINTLPGFTAISMYPMLWKEQGLDKKALIDELINLA 347


>gi|282890537|ref|ZP_06299060.1| hypothetical protein pah_c022o126 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281499534|gb|EFB41830.1| hypothetical protein pah_c022o126 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 788

 Score =  301 bits (772), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 88/322 (27%), Positives = 152/322 (47%), Gaps = 32/322 (9%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           + +L GG S+E EVSL+S +    +L+   ++  +  + +    VL +            
Sbjct: 455 IGILYGGKSTEHEVSLTSSQYICRSLDRDLYETHEFLITKEGKWVLKNEGDSEEFLISSQ 514

Query: 49  -----LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103
                 K DL F +LHG FGEDG +Q  LE+L  PY      +SA+ MDK  +K+++   
Sbjct: 515 VLQQLQKCDLLFPILHGTFGEDGTIQGFLEILGKPYVGCDHQSSAICMDKAIAKRLMQHA 574

Query: 104 GVPVCPSILVNRFTM---------DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154
           G+     I  +             + +  +  P  +KP+  GSS+G+  +  +  +   +
Sbjct: 575 GIQTSSFIAFSETDWKNRAKDLLHEIREKLIFPIFVKPVHLGSSIGVQRVTNETELDAAI 634

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV--PKSDFYSYELKYSSLNST 212
             + ++     +L+E  + G E+   V+G+  + V            + Y  KYS  N+T
Sbjct: 635 RNAFAF--DPVILVENEIAGREIEFAVLGNDQITVLPPGEVFSAGKIHDYRGKYSRDNAT 692

Query: 213 HVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271
              P A +P    +E + +A  A+QA  C+G++R DF  D  S   ++ EIN  PG TP 
Sbjct: 693 PSTPQADLPEKWMEEGKAIALKAYQAATCKGMARIDFFLD-QSGSFWFNEINPIPGFTPF 751

Query: 272 SIFPEMAAYAGYSFRELLLWMV 293
           S++P+M    G+S  EL+  ++
Sbjct: 752 SLYPQMCEANGFSNEELIDRLL 773


>gi|322389127|ref|ZP_08062690.1| D-alanine-D-alanine ligase [Streptococcus parasanguinis ATCC 903]
 gi|321144169|gb|EFX39584.1| D-alanine-D-alanine ligase [Streptococcus parasanguinis ATCC 903]
          Length = 348

 Score =  301 bits (772), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 94/330 (28%), Positives = 159/330 (48%), Gaps = 41/330 (12%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQ--------------------------- 35
           +L GG S+EREVS+ S ++   A++   F V                             
Sbjct: 8   LLYGGRSAEREVSVLSAESVMRAIDYQAFSVQTYFITQSGDFIQTQAFEEKPADDEKLMT 67

Query: 36  ---IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
              +D  + V     + +  + F VLHG  GEDG +Q  LE+L++PY   GILAS+++MD
Sbjct: 68  NDTVDWSKKVAPSAIYKEGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCGILASSVAMD 127

Query: 93  KMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           K+ +K+V+ S G+P  P + V             +  +S P   KP   GSS+GI   + 
Sbjct: 128 KITTKRVLESAGIPQVPYVAVVEGDDLEEKIAAIEATLSYPVFTKPSNMGSSVGISKSEN 187

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYEL 204
              +   L    ++ +  ++L+EQ V+  E+  G++G+  +  T     V    FY Y+ 
Sbjct: 188 QTELRAAL--ELAFKYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDYDA 245

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           KY     T  +PA++  ++ K ++  A  A +AIG  G++R DF +     ++F  E+N 
Sbjct: 246 KYIDNKITMAIPAQLDPEVVKTMRTNAEKAFRAIGGLGLARCDFFYTDK-GEIFLNELNT 304

Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            PG T  S++P +    G ++ +L+  +VE
Sbjct: 305 MPGFTQWSMYPLLWDNMGLNYTDLITKLVE 334


>gi|253575141|ref|ZP_04852480.1| D-alanine-D-alanine ligase [Paenibacillus sp. oral taxon 786 str.
           D14]
 gi|251845597|gb|EES73606.1| D-alanine-D-alanine ligase [Paenibacillus sp. oral taxon 786 str.
           D14]
          Length = 311

 Score =  301 bits (772), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 100/307 (32%), Positives = 159/307 (51%), Gaps = 12/307 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGG+SSEREVSL +GK     L+   ++V  I++ +   L+      D A   LHG
Sbjct: 3   VGVIMGGVSSEREVSLMTGKEIVGKLDPNKYEVVPIELTKREELIDRVRGIDFALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF---- 116
            FGEDG VQ +LE + IPY+ SG+L+S+L MDK  +K+++ + G+       + R     
Sbjct: 63  AFGEDGTVQGVLETMGIPYSGSGVLSSSLCMDKNLTKRLLQTEGIATPDGAYLERAMFAD 122

Query: 117 --TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
                    ++ P  +KP  GGSS+G+  + + + +   L ++  W  G+ +L+E  V G
Sbjct: 123 GTWEPKMAGLAYPLFVKPNAGGSSIGVQRVDRPELLRGALEEAFRW--GESVLVESMVSG 180

Query: 175 IELTCGVMGDASLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
            E+TC ++    L V  I      +++ YE KYS   +    P  +P D    V+  A  
Sbjct: 181 QEITCPILDGELLPVLGIRAANGAEWFDYEAKYSDGGAEE-KPITLPPDEETRVRAAALA 239

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            ++ + CR  +R D +        + LE+N  PGMT  S+ P  AA AG S+ ELL  ++
Sbjct: 240 CYRLLQCRVYARVDMIL--KDGVPYVLEVNTLPGMTANSLLPRSAAAAGISYSELLDRII 297

Query: 294 EDASCLR 300
           E +   R
Sbjct: 298 ELSLAER 304


>gi|168181325|ref|ZP_02615989.1| D-alanine--D-alanine ligase [Clostridium botulinum Bf]
 gi|237793779|ref|YP_002861331.1| D-alanine--D-alanine ligase [Clostridium botulinum Ba4 str. 657]
 gi|259645164|sp|C3L065|DDL_CLOB6 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|182675365|gb|EDT87326.1| D-alanine--D-alanine ligase [Clostridium botulinum Bf]
 gi|229260958|gb|ACQ51991.1| D-alanine--D-alanine ligase [Clostridium botulinum Ba4 str. 657]
          Length = 300

 Score =  301 bits (772), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 97/297 (32%), Positives = 156/297 (52%), Gaps = 9/297 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGGIS+EREVSL+SG+     LE    ++  I +D+   +V      D AF  LHG
Sbjct: 3   IGVIMGGISTEREVSLNSGREVIKYLELLEHEIIPIIIDKKEDVVEKVKGIDFAFLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI---LVNRFT 117
            FGEDG VQ++L+ L+IPY+  G L SA+ MDK  +K+++    +     +    V    
Sbjct: 63  EFGEDGTVQSVLQTLDIPYSGCGPLTSAICMDKDMTKKILKYANINTADWVNVSSVEDID 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            ++   I  P  +KP  GGSS+   ++K    I   +  +    +  +++IE Y  G E+
Sbjct: 123 YEAIEKIGYPVFVKPNSGGSSVATNLVKDGDGIKEAVELAL--KYDKEVMIENYTKGEEI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC ++    L V  I  P ++F+ Y  KY+   S  V+  ++  +++K+V+ +A    + 
Sbjct: 181 TCCMLNGKMLPVLAIR-PHAEFFDYTAKYADGGSDEVV-IELEENLHKKVEEMALACWKE 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           + C    R D +        + LE+N  PGMT  S+FP+ A   G SF ELL  +V+
Sbjct: 239 LKCEVYVRVDMIVKA--GVPYVLELNTLPGMTKNSLFPKSANAVGISFAELLNSIVK 293


>gi|256851798|ref|ZP_05557186.1| D-alanine-D-alanine ligase [Lactobacillus jensenii 27-2-CHN]
 gi|260661940|ref|ZP_05862850.1| D-alanine-D-alanine ligase [Lactobacillus jensenii 115-3-CHN]
 gi|282934938|ref|ZP_06340168.1| D-alanine--D-alanine ligase [Lactobacillus jensenii 208-1]
 gi|297205420|ref|ZP_06922816.1| D-alanine--D-alanine ligase [Lactobacillus jensenii JV-V16]
 gi|256615756|gb|EEU20945.1| D-alanine-D-alanine ligase [Lactobacillus jensenii 27-2-CHN]
 gi|260547409|gb|EEX23389.1| D-alanine-D-alanine ligase [Lactobacillus jensenii 115-3-CHN]
 gi|281301031|gb|EFA93345.1| D-alanine--D-alanine ligase [Lactobacillus jensenii 208-1]
 gi|297149998|gb|EFH30295.1| D-alanine--D-alanine ligase [Lactobacillus jensenii JV-V16]
          Length = 361

 Score =  301 bits (772), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 92/342 (26%), Positives = 169/342 (49%), Gaps = 48/342 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVG----------------- 43
           + ++ GG SSE EVS+ SG    +A++   + V  I + +                    
Sbjct: 7   VGLIFGGNSSEYEVSIVSGHNIYNAIDKEKYDVYPIWLTKDNYFASLEDSKKVWDDPTYT 66

Query: 44  -------------LVLAHL-KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
                          LA+L + D+ F ++HGN GEDG++Q    +L+ P+    +LA+A+
Sbjct: 67  IKNPHKLANVSNFEQLANLPEMDVYFPIVHGNIGEDGVIQGFFRMLDKPFVGDDVLAAAV 126

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ-----------HLISPPYVIKPLKGGSS 138
           +MDK  +K +    GVPV   + + RF  + +             +     +KP   GSS
Sbjct: 127 TMDKEFTKILAQRAGVPVADWVAIKRFEYNDKNNSKLDYNYVSKKLGTDLFVKPSNQGSS 186

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVP 195
           +GI  +K +      L  + ++ + D++L+E+ +DG E+   V+G+  + V+   +I   
Sbjct: 187 VGISHVKSEADYLPAL--AEAFKYDDKVLVEEAIDGTEVETAVLGNDDIIVSGVGQIINA 244

Query: 196 KSDFYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
           K  FYSY+ KY   ++T +  PA +P +I ++V+  A   ++A  C G++R D +     
Sbjct: 245 KGSFYSYKNKYDDSSTTTLQIPADLPAEIVEKVRSNAEKIYRATECSGMARIDSMLRTSD 304

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            +V + E+N  PG T +S++P++   AG  + +L+  ++E A
Sbjct: 305 HEVIFNELNALPGFTNISMYPKLFEEAGIKYTDLISRLIELA 346


>gi|42781687|ref|NP_978934.1| D-alanine--D-alanine ligase [Bacillus cereus ATCC 10987]
 gi|217960060|ref|YP_002338618.1| D-alanine--D-alanine ligase [Bacillus cereus AH187]
 gi|42737610|gb|AAS41542.1| D-alanine--D-alanine ligase [Bacillus cereus ATCC 10987]
 gi|217067100|gb|ACJ81350.1| D-alanine--D-alanine ligase [Bacillus cereus AH187]
          Length = 304

 Score =  301 bits (772), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 88/303 (29%), Positives = 159/303 (52%), Gaps = 9/303 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGG+SSE++VS+ +G    + L+   +++  I ++  + L+      D A   LHG
Sbjct: 3   IGVIMGGVSSEKQVSIMTGNEMIANLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117
            +GEDG VQ  LE L IPY+ S +L+S + MDK  SK+++   G+     I + +     
Sbjct: 63  KYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNISKKILRYEGIETPDWIELTKMEDLN 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
           +D    +  P V+KP  GGSS+G+ ++     +    +  + +    +++IE+Y+ G E+
Sbjct: 123 VDELDKLGFPLVVKPNSGGSSVGVKIVYDKDELIS--MLETVFEWDSEVVIEKYIKGDEI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC +     L +  I    ++F+ Y  KY    ST     ++P ++ + V + +   ++A
Sbjct: 181 TCSIFDGKQLPIISIR-HAAEFFDYNAKYD-DTSTIEEVIELPAELKERVNKASLACYKA 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           + C   +R D +        + +EIN  PGMT  S+ P+ AA AG  + +LL  ++E + 
Sbjct: 239 LKCSVYARVDMMV--KDGIPYVMEINTLPGMTQASLLPKSAAAAGIEYSKLLDMIIETSL 296

Query: 298 CLR 300
            +R
Sbjct: 297 RVR 299


>gi|238854349|ref|ZP_04644691.1| vancomycin/teicoplanin A-type resistance protein VanA
           [Lactobacillus jensenii 269-3]
 gi|260665042|ref|ZP_05865892.1| D-alanine-D-alanine ligase [Lactobacillus jensenii SJ-7A-US]
 gi|282931753|ref|ZP_06337238.1| D-alanine--D-alanine ligase [Lactobacillus jensenii 208-1]
 gi|313472963|ref|ZP_07813450.1| D-alanine--D-alanine ligase [Lactobacillus jensenii 1153]
 gi|238832971|gb|EEQ25266.1| vancomycin/teicoplanin A-type resistance protein VanA
           [Lactobacillus jensenii 269-3]
 gi|239528848|gb|EEQ67849.1| D-alanine--D-alanine ligase [Lactobacillus jensenii 1153]
 gi|260561096|gb|EEX27070.1| D-alanine-D-alanine ligase [Lactobacillus jensenii SJ-7A-US]
 gi|281304060|gb|EFA96177.1| D-alanine--D-alanine ligase [Lactobacillus jensenii 208-1]
          Length = 361

 Score =  301 bits (772), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 91/342 (26%), Positives = 168/342 (49%), Gaps = 48/342 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVG----------------- 43
           + ++ GG SSE EVS+ SG    +A++   + V  I + +                    
Sbjct: 7   VGLIFGGNSSEYEVSIVSGHNIYNAIDKEKYDVYPIWLTKDNYFASLEDSKKVWDDPTYT 66

Query: 44  -------------LVLAHL-KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
                          LA+L + D+ F ++HGN GEDG++Q    +L+ P+    +LA+A+
Sbjct: 67  IKNPHKLANVSNFEQLANLPEMDVYFPIVHGNIGEDGVIQGFFRMLDKPFVGDDVLAAAV 126

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ-----------HLISPPYVIKPLKGGSS 138
           +MDK  +K +    GVPV   + + RF  + +             +     +KP   GSS
Sbjct: 127 TMDKEFTKILAQRAGVPVADWVAIKRFEYNDKNNSKLDYKYVSEKLGTDLFVKPSNQGSS 186

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVP 195
           +GI  +K +      L  + ++ + D++L+E+ + G E+   V+G+  + V+   +I   
Sbjct: 187 VGITHVKSESDYLPAL--AEAFKYDDKVLVEEAITGTEVETAVLGNDDIIVSGVGQIINA 244

Query: 196 KSDFYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
           K  FYSY+ KY   ++T +  PA +P +I ++V+  A   ++A  C G++R D +     
Sbjct: 245 KGSFYSYKNKYDDSSTTTLQIPADLPAEIVEKVRSNAEKIYRATECSGMARIDSMLRTSD 304

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            +V + E+N  PG T +S++P++   AG  + +L+  ++E A
Sbjct: 305 HEVIFNELNALPGFTNISMYPKLFEEAGIKYTDLISRLIELA 346


>gi|255283497|ref|ZP_05348052.1| D-alanine--D-alanine ligase [Bryantella formatexigens DSM 14469]
 gi|255265954|gb|EET59159.1| D-alanine--D-alanine ligase [Bryantella formatexigens DSM 14469]
          Length = 341

 Score =  301 bits (772), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 101/339 (29%), Positives = 162/339 (47%), Gaps = 49/339 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------------------- 38
           + VL GG S+ER+VS+ SG     AL   G     +DV                      
Sbjct: 3   IVVLAGGTSTERDVSIVSGTKVCEALRSRGHLAILLDVFCGKEGLQAETAFAEEYDVERE 62

Query: 39  ---DRSVGLVLAHLKP-----------------DLAFNVLHGNFGEDGLVQAILELLEIP 78
               RS    +  +K                  D  F  LHG  GEDG +QA  +LL I 
Sbjct: 63  AAYIRSFNDSIEKIKAERREFFGPGVLETCRAADTVFLALHGTCGEDGRIQAAFDLLGIT 122

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD---SQHLISPPYVIKPLKG 135
           YT SG L SAL+MDK  +KQ+    GVP    ++V +       ++  +  P V+K   G
Sbjct: 123 YTGSGYLGSALAMDKTITKQLFRENGVPAPAGVIVRKTDSPKSAAELGMELPCVVKTACG 182

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195
           GSS+G+ ++  ++     +     +++ D+L++EQY+ G E T GV+   +  + EI+ P
Sbjct: 183 GSSVGVYIVHTEEEFSEAVKN--GFSYEDKLIVEQYIRGQEYTVGVIDGKAYPIVEIS-P 239

Query: 196 KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255
            + FY Y+ KY + ++    PA +  ++ +++Q +A  A+  +     +R DF+ D    
Sbjct: 240 IAGFYDYKNKYQAGSTIETCPAPLSAELTQKMQEIALKAYDTLRLESYARMDFMMDE-DG 298

Query: 256 KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            ++ LE N  PGMTP S+ P+ AA  G +F +L   ++E
Sbjct: 299 GIYCLEANTLPGMTPTSLLPQEAAAVGMNFADLCEKLIE 337


>gi|78058364|gb|ABB17543.1| VanG2 [Enterococcus faecalis]
          Length = 349

 Score =  301 bits (772), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 95/342 (27%), Positives = 155/342 (45%), Gaps = 52/342 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44
           +A++ GG S+E EVSL S  A    +    F +  I + R+                   
Sbjct: 6   IAIIFGGNSTEYEVSLQSASAVFENINTKKFDIVPIGITRNGDWYHYTGKKEKIANNTWF 65

Query: 45  --------------------------VLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIP 78
                                         +K DL F VLHG  GEDG +Q + EL  IP
Sbjct: 66  EDNENLYSVAVSQNRSVKGFIEFKEEKFYIIKVDLIFPVLHGKNGEDGTLQGLFELAGIP 125

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-----QHLISPPYVIKPL 133
                 L+SAL MDK ++ ++VS  G+ V  S+        +     +  +S P  +KP+
Sbjct: 126 VVGCDTLSSALCMDKDKAHKLVSLAGISVPKSVTFKFSGKKAALKKIEKELSYPLFVKPV 185

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
           + GSS GI  + K Q +   +    ++ H  ++++E+ ++G E+ C V+G   L V  + 
Sbjct: 186 RAGSSFGITKVTKQQELENAIQL--AFEHDAEVIVEETINGFEVGCAVLGIDELIVGRVD 243

Query: 194 VPK--SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
             +  S F+ Y  KY+  +S   +PA+I  +  K +Q  A   ++A+GC G SR D  + 
Sbjct: 244 EIELSSGFFDYTEKYTLKSSKIYMPARIDAEAEKRIQETAVTIYKALGCSGFSRVDMFYT 303

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           P   ++ + E+N  PG T  S +P M    G SF ++L  ++
Sbjct: 304 PS-GEIVFNEVNTIPGFTSHSRYPNMMKGIGLSFAQMLDKLI 344


>gi|46199525|ref|YP_005192.1| D-alanine-D-alanine ligase [Thermus thermophilus HB27]
 gi|81405628|sp|Q72IA9|DDL_THET2 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|46197151|gb|AAS81565.1| D-alanine-D-alanine ligase [Thermus thermophilus HB27]
          Length = 319

 Score =  301 bits (772), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 101/319 (31%), Positives = 161/319 (50%), Gaps = 31/319 (9%)

Query: 3   VLMGGISSEREVSLSSGKACASA---------LEDAGFKVSQI------------DVDRS 41
           ++ GG+S E EVSL S +              +   G  +               + +  
Sbjct: 5   LIAGGVSPEHEVSLLSAEGVLRHMPFPTDLAVIARDGRWLLGEKALAALEAKAAPEGEHP 64

Query: 42  VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
               L   + D+ F +LHG FGEDG VQ  LELL  PY  +G+ ASAL MDK  SK+V++
Sbjct: 65  FPPPLPWERYDVVFPLLHGRFGEDGTVQGFLELLGKPYVGAGVAASALCMDKDLSKRVLA 124

Query: 102 SCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN 161
             GVPV P + V +    S     PP+ +KP   GSS+GI  +++ Q +   L    ++ 
Sbjct: 125 QAGVPVVPWVAVRKGE-PSMVPFDPPFFVKPANTGSSVGISRVERFQDLEAALAL--AFR 181

Query: 162 HGDQLLIEQYVDG-IELTCGVMGD---ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
           + ++ ++E+ +    EL  GV+G+    +  V E+   ++ FY YE KY+   +  ++PA
Sbjct: 182 YDEKAVVEKALSPVRELEVGVLGNVFGEASPVGEVRY-EAPFYDYETKYTPGRAELLIPA 240

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
            +     + VQ LA  A++ +G RG++R DF       +V+  E+N  PG TP S++P +
Sbjct: 241 PLDPGTQETVQELALKAYKVLGVRGMARVDFFL--AEGEVYLNELNTIPGFTPTSMYPRL 298

Query: 278 AAYAGYSFRELLLWMVEDA 296
               G ++ ELL  +VE A
Sbjct: 299 FEAGGVAYPELLRRLVELA 317


>gi|229823359|ref|ZP_04449428.1| hypothetical protein GCWU000282_00657 [Catonella morbi ATCC 51271]
 gi|229787134|gb|EEP23248.1| hypothetical protein GCWU000282_00657 [Catonella morbi ATCC 51271]
          Length = 367

 Score =  301 bits (772), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 84/348 (24%), Positives = 153/348 (43%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           + +L GG S+E ++SL S      ++    ++V  + + +    +               
Sbjct: 8   IVLLYGGQSAEHDISLISAHNIMQSIMYNYYEVQPVYITKQGDWLKGAPLSGPLSHSNQL 67

Query: 46  --------LAHLKPD------------------LAFNVLHGNFGEDGLVQAILELLEIPY 79
                        P+                  + F VLHG  GEDG +Q  LE+L +PY
Sbjct: 68  ALTAGPQARWAEGPEGQSVGTLIQPGDIKEADTIVFPVLHGPNGEDGTIQGFLEVLGMPY 127

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVI 130
             +G+ ASA  MDK+ SKQ+    G+P  P +  +               +  +  P  +
Sbjct: 128 VGAGVTASACGMDKVISKQLFHQAGLPQVPYVAFDSREWAQSPEEWMNRCEGNLLYPLFV 187

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190
           KP   GSS+GI      + +   + ++  ++   ++++EQ +   E    V+G+     +
Sbjct: 188 KPANMGSSVGISKATTTEELRAAVEKALQFDR--RIVVEQGISAQECEVAVLGNDDAHAS 245

Query: 191 EIA--VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
            +   V  +DFY Y+ KY +      +PA++P  I  ++Q  A  A++A+  +G+SR DF
Sbjct: 246 VVGRLVKTADFYDYDEKYVNNTVEMEIPAQLPDAISDKIQEYALRAYRALDGKGLSRVDF 305

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                   ++  EIN  PG TP S++P +    G + R+L+  +++ A
Sbjct: 306 FVTAS-HDIYINEINTMPGFTPYSMYPCLWEATGLNTRDLIEELLQLA 352


>gi|238925283|ref|YP_002938800.1| D-alanine--D-alanine ligase [Eubacterium rectale ATCC 33656]
 gi|238876959|gb|ACR76666.1| D-alanine--D-alanine ligase [Eubacterium rectale ATCC 33656]
          Length = 369

 Score =  301 bits (771), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 112/345 (32%), Positives = 171/345 (49%), Gaps = 55/345 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-----DRSVGLV---------- 45
           + VL GG+S+ER+VS  +G   A AL++ G KV  +DV     DR   L           
Sbjct: 21  IVVLAGGLSTERDVSFKTGSMVAKALKENGHKVILLDVFMGYSDREEDLTGIFDRADEIS 80

Query: 46  ------------LAHLKP---------------------DLAFNVLHGNFGEDGLVQAIL 72
                       LA +K                      D+ F  LHG  GE+G +QA  
Sbjct: 81  VQVSDIPTEAPDLAKVKASRKDQSPCFFGPNVIKMCQMADIVFMALHGENGENGKIQAAF 140

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---QHLISPPYV 129
           +L  + YT S  L+SA++M+K  SKQ   + G+P    I + R T      +  ++ P V
Sbjct: 141 DLFGVKYTGSDYLSSAIAMNKETSKQFFLANGIPTPKGISMTRATRQDDITKLDLTLPCV 200

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           +KP  GGSS+G+ +++        L  +  W   ++L+IE++V G E + GV+   +L +
Sbjct: 201 VKPCCGGSSIGVTIVRDAAEFKAALDDAFKWE--NELVIEEFVQGREFSVGVIEGKALPI 258

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
            EIA PK  FY Y+ KY + ++    PA++P  + K++Q  A    + IG    SRSDFL
Sbjct: 259 IEIA-PKEGFYDYKNKYKAGSTVETCPAELPEQVTKDMQHYAEEVARVIGLDTYSRSDFL 317

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            +    ++F LE N  PGMTP S+ P+ AA  G SF +L   +++
Sbjct: 318 LNDK-NEMFCLEANTLPGMTPTSLLPQEAAVIGMSFNQLCEHLID 361


>gi|15842537|ref|NP_337574.1| D-alanyl-alanine synthetase A [Mycobacterium tuberculosis CDC1551]
 gi|121638862|ref|YP_979086.1| D-alanyl-alanine synthetase A [Mycobacterium bovis BCG str. Pasteur
           1173P2]
 gi|148824171|ref|YP_001288925.1| D-alanyl-alanine synthetase A [Mycobacterium tuberculosis F11]
 gi|224991354|ref|YP_002646043.1| D-alanyl-alanine synthetase A [Mycobacterium bovis BCG str. Tokyo
           172]
 gi|254233065|ref|ZP_04926392.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis C]
 gi|254552058|ref|ZP_05142505.1| D-alanyl-alanine synthetase A [Mycobacterium tuberculosis '98-R604
           INH-RIF-EM']
 gi|260188005|ref|ZP_05765479.1| D-alanyl-alanine synthetase A [Mycobacterium tuberculosis CPHL_A]
 gi|289444545|ref|ZP_06434289.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis T46]
 gi|289448653|ref|ZP_06438397.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis CPHL_A]
 gi|289553229|ref|ZP_06442439.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis KZN
           605]
 gi|289571180|ref|ZP_06451407.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis T17]
 gi|289751658|ref|ZP_06511036.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis T92]
 gi|289755097|ref|ZP_06514475.1| D-Ala-D-Ala ligase [Mycobacterium tuberculosis EAS054]
 gi|289759106|ref|ZP_06518484.1| D-Ala-D-Ala ligase [Mycobacterium tuberculosis T85]
 gi|289763161|ref|ZP_06522539.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis GM
           1503]
 gi|294993933|ref|ZP_06799624.1| D-alanyl-alanine synthetase A [Mycobacterium tuberculosis 210]
 gi|297635606|ref|ZP_06953386.1| D-alanyl-alanine synthetase A [Mycobacterium tuberculosis KZN 4207]
 gi|297732604|ref|ZP_06961722.1| D-alanyl-alanine synthetase A [Mycobacterium tuberculosis KZN R506]
 gi|298526451|ref|ZP_07013860.1| D-alanine-D-alanine ligase [Mycobacterium tuberculosis 94_M4241A]
 gi|306789864|ref|ZP_07428186.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis
           SUMu004]
 gi|306804763|ref|ZP_07441431.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis
           SUMu008]
 gi|306808957|ref|ZP_07445625.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis
           SUMu007]
 gi|308369920|ref|ZP_07419522.2| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis
           SUMu002]
 gi|308371194|ref|ZP_07424146.2| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis
           SUMu003]
 gi|308373594|ref|ZP_07432977.2| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis
           SUMu005]
 gi|308374744|ref|ZP_07437220.2| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis
           SUMu006]
 gi|308378154|ref|ZP_07481716.2| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis
           SUMu009]
 gi|313659936|ref|ZP_07816816.1| D-alanyl-alanine synthetase A [Mycobacterium tuberculosis KZN
           V2475]
 gi|166198491|sp|A1KMX5|DDL_MYCBP RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|13882847|gb|AAK47388.1| D-alanine--D-alanine ligase [Mycobacterium tuberculosis CDC1551]
 gi|121494510|emb|CAL72991.1| Probable D-alanine--D-alanine ligase ddlA [Mycobacterium bovis BCG
           str. Pasteur 1173P2]
 gi|124602124|gb|EAY61134.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis C]
 gi|148722698|gb|ABR07323.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis F11]
 gi|224774469|dbj|BAH27275.1| D-alanyl-alanine synthetase A [Mycobacterium bovis BCG str. Tokyo
           172]
 gi|289417464|gb|EFD14704.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis T46]
 gi|289421611|gb|EFD18812.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis CPHL_A]
 gi|289437861|gb|EFD20354.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis KZN
           605]
 gi|289544934|gb|EFD48582.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis T17]
 gi|289692245|gb|EFD59674.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis T92]
 gi|289695684|gb|EFD63113.1| D-Ala-D-Ala ligase [Mycobacterium tuberculosis EAS054]
 gi|289710667|gb|EFD74683.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis GM
           1503]
 gi|289714670|gb|EFD78682.1| D-Ala-D-Ala ligase [Mycobacterium tuberculosis T85]
 gi|298496245|gb|EFI31539.1| D-alanine-D-alanine ligase [Mycobacterium tuberculosis 94_M4241A]
 gi|308325969|gb|EFP14820.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis
           SUMu002]
 gi|308329500|gb|EFP18351.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis
           SUMu003]
 gi|308333638|gb|EFP22489.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis
           SUMu004]
 gi|308336995|gb|EFP25846.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis
           SUMu005]
 gi|308340809|gb|EFP29660.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis
           SUMu006]
 gi|308344673|gb|EFP33524.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis
           SUMu007]
 gi|308348623|gb|EFP37474.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis
           SUMu008]
 gi|308353349|gb|EFP42200.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis
           SUMu009]
 gi|323718360|gb|EGB27534.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis
           CDC1551A]
 gi|326904595|gb|EGE51528.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis W-148]
 gi|328457701|gb|AEB03124.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis KZN
           4207]
          Length = 373

 Score =  301 bits (771), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 99/356 (27%), Positives = 161/356 (45%), Gaps = 65/356 (18%)

Query: 5   MGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD------------ 52
            GG S+E  +S  S  +    L+   F V  + +  +   VL    PD            
Sbjct: 17  FGGRSNEHAISCVSAGSILRNLDSRRFDVIAVGITPAGSWVLTDANPDALTITNRELPQV 76

Query: 53  -----------------------------------LAFNVLHGNFGEDGLVQAILELLEI 77
                                              + F VLHG +GEDG +Q +LEL  +
Sbjct: 77  KSGSGTELALPADPRRGGQLVSLPPGAGEVLESVDVVFPVLHGPYGEDGTIQGLLELAGV 136

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQ--HLISPPYVIKPL 133
           PY  +G+LASA+ MDK  +K+++++ G+PV    ++   R T+  Q    +  P  +KP 
Sbjct: 137 PYVGAGVLASAVGMDKEFTKKLLAADGLPVGAYAVLRPPRSTLHRQECERLGLPVFVKPA 196

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG--DASLDVT- 190
           +GGSS+G+  +     +P  +  + +  H  ++++E  + G EL CGV+   D +L+ + 
Sbjct: 197 RGGSSIGVSRVSSWDQLPAAV--ARARRHDPKVIVEAAISGRELECGVLEMPDGTLEAST 254

Query: 191 --EIAVP-----KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
             EI V      +  FY +  KY    +   +PAK+   + + +++LA  A  AI CRG+
Sbjct: 255 LGEIRVAGVRGREDSFYDFATKYLDDAAELDVPAKVDDQVAEAIRQLAIRAFAAIDCRGL 314

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
           +R DF            EIN  PG T +S++P M A +G  +  LL  M+E A   
Sbjct: 315 ARVDFFLT--DDGPVINEINTMPGFTTISMYPRMWAASGVDYPTLLATMIETALAR 368


>gi|322377428|ref|ZP_08051919.1| D-alanine--D-alanine ligase [Streptococcus sp. M334]
 gi|321281628|gb|EFX58637.1| D-alanine--D-alanine ligase [Streptococcus sp. M334]
          Length = 347

 Score =  301 bits (771), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 96/334 (28%), Positives = 160/334 (47%), Gaps = 41/334 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------------------- 38
           + +L GG S+EREVS+ S ++   A+    F V    +                      
Sbjct: 5   IILLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDFIKTQEFSQTPGQEDRL 64

Query: 39  --------DRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
                   D+ V     + +  + F VLHG  GEDG VQ  LE+L++PY    IL+S+L+
Sbjct: 65  MTNETIAWDKKVAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLA 124

Query: 91  MDKMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
           MDK+ +K+V+ S G+   P +       V     + +  ++ P   KP   GSS+GI   
Sbjct: 125 MDKITTKRVLESVGIAQVPYVAIVEGDDVTAKIAEVEEKLTYPVFTKPSNMGSSVGISKS 184

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202
           +  + +   L    ++ +  ++L+EQ V+  E+  G++G+  +  T     V    FY Y
Sbjct: 185 ENQEELRQALKL--AFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDY 242

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
           + KY     T  +PAKI  D+   +++ A  A +AIG  G+SR DF +     ++F  E+
Sbjct: 243 DAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDFFYTDK-GEIFLNEL 301

Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           N  PG T  S++P +    G S+ +L+  +V+ A
Sbjct: 302 NTMPGFTQWSMYPLLWDNMGISYPDLIERLVDLA 335


>gi|257054969|ref|YP_003132801.1| D-alanyl-alanine synthetase A [Saccharomonospora viridis DSM 43017]
 gi|256584841|gb|ACU95974.1| D-alanine--D-alanine ligase [Saccharomonospora viridis DSM 43017]
          Length = 365

 Score =  301 bits (771), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 98/356 (27%), Positives = 159/356 (44%), Gaps = 60/356 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +AV+ GG S+E  +S  S  +  + L+   F+V  I + +  G VL    P         
Sbjct: 8   VAVVFGGRSTEHTISCVSAGSIMANLDPDRFEVVPIGITQEGGWVLGTNDPEQLRIKGRE 67

Query: 52  ------------------------------------DLAFNVLHGNFGEDGLVQAILELL 75
                                               D+ F  LHG FGEDG +Q +LEL 
Sbjct: 68  LPVVEHGKTLVLAGDPTTGGVLSLTAGEPAEVLSGVDVVFPALHGAFGEDGTIQGLLELA 127

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT----MDSQHLISPPYVIK 131
           +IPY  SG+ ASA +MDK  +K+++++ G+ V    +V R       + +  +  P  +K
Sbjct: 128 DIPYVGSGVFASAAAMDKEYAKKLLAAEGLEVGRYAVVRRGQDTLPAEERERLGLPVFVK 187

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG-----DAS 186
           P + GSS+GI  +     +  D   + +     ++L+E    G E+ CGV+        +
Sbjct: 188 PARAGSSIGISRVTDWSQL--DAAIAHARQTDPKVLVEAETVGREVECGVLEFADGRVEA 245

Query: 187 LDVTEIAVPKSD---FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
              +EI V   D   +Y +E KY   ++   +PAK+   I + ++ +A  A  A+ C+G+
Sbjct: 246 SFPSEIRVLSDDADAWYDFETKYLGEDAELDIPAKLDDTITERLRDMAVRAFTALECQGL 305

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
           +R DF   P    +   E+N  PG TP S +P+M    G  +  LL  +VE A   
Sbjct: 306 ARVDFFVGP-DGTLTVNEVNTMPGFTPTSAYPKMWEVTGIDYPTLLTTLVETALAR 360


>gi|94676718|ref|YP_588832.1| D-ala D-ala ligase [Baumannia cicadellinicola str. Hc (Homalodisca
           coagulata)]
 gi|166198474|sp|Q1LT82|DDL_BAUCH RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|94219868|gb|ABF14027.1| D-ala D-ala ligase [Baumannia cicadellinicola str. Hc (Homalodisca
           coagulata)]
          Length = 375

 Score =  301 bits (771), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 90/348 (25%), Positives = 161/348 (46%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           + ++ GG S+E EVSL S K     +++  F+V    +D+     + +            
Sbjct: 6   VGIIFGGQSAEHEVSLQSAKNIVETIDENKFEVVLFGIDKEGQWHINNKLNYLIYGENET 65

Query: 49  -------------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEI 77
                                          ++ D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  YIALNKSNKHIAIIPGRKHDQFIQIDMLEQLVQLDVIFPIVHGTLGEDGNLQGLLRMANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVIK 131
           P+  S +L SA+SMDK  +K+++    + V PSI + R   ++         +     +K
Sbjct: 126 PFVGSTVLGSAVSMDKDIAKRLLRDADLEVTPSITLTRINRENFSYDQIITYLGSSLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  +    S    L  +  +   D++L+E  ++G EL C V+G+     + 
Sbjct: 186 PANQGSSVGVSKVINRISFDQALALAFCF--DDKVLVESAINGRELECAVLGNHDPQASL 243

Query: 192 IA--VPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               V   +FYSYE KY +   +  V+PA I  ++   +Q++A  A QA+ C G++R D 
Sbjct: 244 CGEIVLSDNFYSYEKKYLNEHGAVVVVPAAISKEVSNNIQKIAVRAFQALNCTGMARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                + KV   E+N  PG T +S++P++   +G S+  L+  ++E A
Sbjct: 304 FLTT-NNKVLVNEVNTSPGFTSISMYPKLWQASGISYPALITRLIELA 350


>gi|160881909|ref|YP_001560877.1| D-alanine--D-alanine ligase [Clostridium phytofermentans ISDg]
 gi|160430575|gb|ABX44138.1| D-alanine--D-alanine ligase [Clostridium phytofermentans ISDg]
          Length = 353

 Score =  301 bits (771), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 89/347 (25%), Positives = 159/347 (45%), Gaps = 50/347 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           + VL GG SSE EVS  S     + ++   + +  + + +    +L              
Sbjct: 6   IVVLFGGQSSEHEVSCVSAVTVINHIDLDHYDIVLVGITKEGKWLLTGSVEDITSGVWRD 65

Query: 47  ------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
                                    + K D+ F VLHG FGEDG VQ +LEL  +PY   
Sbjct: 66  GKKTAILSPDRSKPSLLIMEDNKVEYQKVDVVFPVLHGLFGEDGTVQGLLELAGVPYVGC 125

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--------QHLISPPYVIKPLK 134
           G+LAS++SMDK+ +K +V S G+       V    ++         ++ IS P  IKP  
Sbjct: 126 GVLASSVSMDKLYTKIIVDSLGIRQAAYEPVYAKELEEMNKVVERIENRISYPVFIKPSN 185

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA- 193
            GSS GI        + + L +++   H  ++L+E+ + G E+ C V+G      + +  
Sbjct: 186 AGSSKGITKAHNRDDLIVGLKEAA--EHDRKILVEETIVGREIECAVLGGMEAKASGVGE 243

Query: 194 -VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            +  ++FY Y+ KY++ +S  ++  ++P    +E+   A    +A+    +SR DF  + 
Sbjct: 244 ILAAAEFYDYDAKYNNADSKTIISPELPEGKAQEISDAAVKIFRAVDGYSLSRVDFFLEK 303

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
            + ++ + EIN  PG T +S++P +    G +  +L+  +++ A   
Sbjct: 304 DTNEIVFNEINTLPGFTAISMYPMLWEAKGIAKPQLVEKLIQTAFTR 350


>gi|313115115|ref|ZP_07800602.1| D-ala D-ala ligase [Faecalibacterium cf. prausnitzii KLE1255]
 gi|310622555|gb|EFQ06023.1| D-ala D-ala ligase [Faecalibacterium cf. prausnitzii KLE1255]
          Length = 363

 Score =  301 bits (771), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 90/353 (25%), Positives = 160/353 (45%), Gaps = 55/353 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           + +L GG+SSE EVS  S     + ++   ++V  + + +    +               
Sbjct: 8   VVLLFGGMSSEHEVSRVSVGNFVNNIDREKYEVLTVGITKEGRWLYTEATAAQMADGSWE 67

Query: 46  ---------------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIP 78
                                      +  +  D+   VLHG +GEDG VQ +LEL  IP
Sbjct: 68  DLAGNMACVISPDRADHGMILFTPEGHVEKVHVDVVIPVLHGLWGEDGTVQGLLELAGIP 127

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYV 129
           Y   G+LASA+ MDK  +  +  + GVP    +  +R+ ++S         +  +  P  
Sbjct: 128 YVGCGVLASAVCMDKAVANALFEANGVPHTRWLAADRWEIESDLEGVCDGVEKKLGWPVF 187

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           +KP   GSS+GI  +     +   +  +    +  +++ E +VDG E+ C V+G      
Sbjct: 188 VKPANAGSSVGISKVSSRDELKKAIDLAL--ENDRKVVFEAFVDGQEVECAVIGSDPAVA 245

Query: 190 TEIA--VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           T     +  ++FY+Y+ KY +  S  V+PA +P     EV+  A +A+ A+ C G++R D
Sbjct: 246 TRPGEILAGAEFYTYDDKYKNGVSQTVIPAHLPEAKLDEVKTYAAIAYTALNCEGLARCD 305

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           F  +  + +V   EIN  PG T +S++P++  + G    +L+  ++  A   +
Sbjct: 306 FFVEKGTGRVLINEINTFPGFTSISMYPKLMEHEGLPVPQLIDRLIALALERK 358


>gi|167747289|ref|ZP_02419416.1| hypothetical protein ANACAC_02003 [Anaerostipes caccae DSM 14662]
 gi|317471032|ref|ZP_07930407.1| D-alanine-D-alanine ligase [Anaerostipes sp. 3_2_56FAA]
 gi|167653267|gb|EDR97396.1| hypothetical protein ANACAC_02003 [Anaerostipes caccae DSM 14662]
 gi|316901473|gb|EFV23412.1| D-alanine-D-alanine ligase [Anaerostipes sp. 3_2_56FAA]
          Length = 350

 Score =  301 bits (771), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 88/344 (25%), Positives = 160/344 (46%), Gaps = 51/344 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           +AV+ GG SSE EVS  S      +L++  + V  + + +    +L              
Sbjct: 5   IAVIFGGRSSEHEVSCVSAATVIRSLDEEKYNVILVGITKDGRWLLVDKLKEIEDGSWRE 64

Query: 49  --------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
                                        D+ F VLHG  GEDG +Q + E+ +IPY   
Sbjct: 65  SRVNAIISPDTEDKALVLLAEGTYRLQPVDVIFPVLHGLNGEDGTIQGLFEMAQIPYVGC 124

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--------SQHLISPPYVIKPLK 134
           G+LASA+SMDK+ +K +V   G+     + + R  +         ++  +S P  +KP +
Sbjct: 125 GVLASAVSMDKVYTKIIVEDLGIRQAQFVHIRRSDLTQMEDALDRAEAKLSYPMFVKPSR 184

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA- 193
            GSS+G+   +  +++   L +++   H   +L+E+ + G E+ C V+G   +  + +  
Sbjct: 185 AGSSVGVSKAEDREALSKALSKAA--EHDRNILVEETIVGREVECAVLGGKEIKASGVGE 242

Query: 194 -VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            +  +DFY Y+ KY++  S  ++   +P +  +E+++ A    +A+   G+SR DF    
Sbjct: 243 ILAAADFYDYDAKYNNQESKTLIDPPMPEETREEIRKSAAEIFKAVDGYGLSRVDFFI-A 301

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            + +V + EIN  PG T +S++P + A  G     L   ++  A
Sbjct: 302 ENGEVVFNEINTLPGFTSISMYPMLWAAQGIKTPALADELIRLA 345


>gi|303249381|ref|ZP_07335607.1| D-alanine/D-alanine ligase [Desulfovibrio fructosovorans JJ]
 gi|302489219|gb|EFL49184.1| D-alanine/D-alanine ligase [Desulfovibrio fructosovorans JJ]
          Length = 306

 Score =  301 bits (771), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 106/301 (35%), Positives = 153/301 (50%), Gaps = 6/301 (1%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK-PDLAFNVLHGN 61
           ++ GG SSEREVSLS       AL+  G +V   D+       +A  +  D AF  LHG 
Sbjct: 5   LVAGGWSSEREVSLSGAVQIGKALKSLGHEVVPCDLSDDFPGFVAAARICDFAFLNLHGA 64

Query: 62  FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-ILVNRFTMDS 120
            GEDGL QA+L+   +PY  +G   S L+++K  SKQ+  S G+P      L        
Sbjct: 65  PGEDGLPQALLDAAGVPYQGAGPAGSFLALNKAASKQLFISHGLPTPRWDFLPTPPPAGY 124

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTC 179
                PP+ +KP  GGSS+ + +++    +P  L     +  GD  LIE+ + G +ELTC
Sbjct: 125 APAFPPPWFVKPNSGGSSVYMSLVRDPAELPAAL--EKIFATGDAALIEEGLCGGMELTC 182

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
            V+GD +L    I     +F+ Y  KY    +  + PA IP  +  E+ RL+  AH A+G
Sbjct: 183 AVLGDEALPPILIRPKAGEFFDYASKYQPEAADEICPAPIPRALTDELGRLSLAAHAALG 242

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
             G SR+DF+       +  LE+N  PGMTP S+ P  A  AG  F +L+  ++E     
Sbjct: 243 LTGYSRADFIHTDKHG-LMLLEVNTLPGMTPTSLLPRSARAAGLDFPQLIAKLMELGLAR 301

Query: 300 R 300
           R
Sbjct: 302 R 302


>gi|215412825|ref|ZP_03421537.1| D-alanyl-alanine synthetase A [Mycobacterium tuberculosis
           94_M4241A]
 gi|215428433|ref|ZP_03426352.1| D-alanyl-alanine synthetase A [Mycobacterium tuberculosis T92]
 gi|215431931|ref|ZP_03429850.1| D-alanyl-alanine synthetase A [Mycobacterium tuberculosis EAS054]
 gi|215447248|ref|ZP_03434000.1| D-alanyl-alanine synthetase A [Mycobacterium tuberculosis T85]
 gi|218754742|ref|ZP_03533538.1| D-alanyl-alanine synthetase A [Mycobacterium tuberculosis GM 1503]
 gi|219559013|ref|ZP_03538089.1| D-alanyl-alanine synthetase A [Mycobacterium tuberculosis T17]
 gi|253797926|ref|YP_003030927.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis KZN
           1435]
 gi|260202123|ref|ZP_05769614.1| D-alanyl-alanine synthetase A [Mycobacterium tuberculosis T46]
 gi|253319429|gb|ACT24032.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis KZN
           1435]
          Length = 358

 Score =  301 bits (771), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 99/356 (27%), Positives = 161/356 (45%), Gaps = 65/356 (18%)

Query: 5   MGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD------------ 52
            GG S+E  +S  S  +    L+   F V  + +  +   VL    PD            
Sbjct: 2   FGGRSNEHAISCVSAGSILRNLDSRRFDVIAVGITPAGSWVLTDANPDALTITNRELPQV 61

Query: 53  -----------------------------------LAFNVLHGNFGEDGLVQAILELLEI 77
                                              + F VLHG +GEDG +Q +LEL  +
Sbjct: 62  KSGSGTELALPADPRRGGQLVSLPPGAGEVLESVDVVFPVLHGPYGEDGTIQGLLELAGV 121

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQ--HLISPPYVIKPL 133
           PY  +G+LASA+ MDK  +K+++++ G+PV    ++   R T+  Q    +  P  +KP 
Sbjct: 122 PYVGAGVLASAVGMDKEFTKKLLAADGLPVGAYAVLRPPRSTLHRQECERLGLPVFVKPA 181

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG--DASLDVT- 190
           +GGSS+G+  +     +P  +  + +  H  ++++E  + G EL CGV+   D +L+ + 
Sbjct: 182 RGGSSIGVSRVSSWDQLPAAV--ARARRHDPKVIVEAAISGRELECGVLEMPDGTLEAST 239

Query: 191 --EIAVP-----KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
             EI V      +  FY +  KY    +   +PAK+   + + +++LA  A  AI CRG+
Sbjct: 240 LGEIRVAGVRGREDSFYDFATKYLDDAAELDVPAKVDDQVAEAIRQLAIRAFAAIDCRGL 299

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
           +R DF            EIN  PG T +S++P M A +G  +  LL  M+E A   
Sbjct: 300 ARVDFFLT--DDGPVINEINTMPGFTTISMYPRMWAASGVDYPTLLATMIETALAR 353


>gi|229196783|ref|ZP_04323525.1| D-alanine--D-alanine ligase [Bacillus cereus m1293]
 gi|228586691|gb|EEK44767.1| D-alanine--D-alanine ligase [Bacillus cereus m1293]
          Length = 304

 Score =  301 bits (771), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 88/303 (29%), Positives = 159/303 (52%), Gaps = 9/303 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGG+SSE++VS+ +G    + L+   +++  I ++  + L+      D A   LHG
Sbjct: 3   VGVIMGGVSSEKQVSIMTGNEMIAHLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117
            +GEDG VQ  LE L IPY+ S +L+S + MDK  SK+++   G+     I + +     
Sbjct: 63  KYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNVSKKILRYEGIETPDWIELTKMEDLN 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
           +D    +  P V+KP  GGSS+G+ ++     +    +  + +    +++IE+Y+ G E+
Sbjct: 123 VDELDKLGFPLVVKPNSGGSSVGVKIVYDKDELIS--MLETVFEWDSEVVIEKYIKGDEI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC +     L +  I    ++F+ Y  KY    ST     ++P ++ + V + +   ++A
Sbjct: 181 TCSIFDGKQLPIISIR-HAAEFFDYNAKYD-DTSTIEEVIELPAELKERVNKASLACYKA 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           + C   +R D +        + +EIN  PGMT  S+ P+ AA AG  + +LL  ++E + 
Sbjct: 239 LKCSVYARVDMMV--KDGIPYVMEINTLPGMTQASLLPKSAAAAGIEYSKLLDMIIETSL 296

Query: 298 CLR 300
            +R
Sbjct: 297 RVR 299


>gi|222096144|ref|YP_002530201.1| d-alanine--d-alanine ligase [Bacillus cereus Q1]
 gi|221240202|gb|ACM12912.1| D-alanine--D-alanine ligase [Bacillus cereus Q1]
          Length = 304

 Score =  301 bits (771), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 86/303 (28%), Positives = 158/303 (52%), Gaps = 9/303 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGG+SSE++VS+ +G    + L+   +++  I ++  + L+      D A   LHG
Sbjct: 3   IGVIMGGVSSEKQVSIMTGNEMIANLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF---T 117
            +GEDG VQ  LE L IPY+ S +L+S + MDK  SK+++   G+     I + +     
Sbjct: 63  KYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNMSKKILRYEGIETPDWIELTKMEDLD 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            D    +  P V+KP  GGSS+G+ ++     +    +  + +    +++IE+Y+ G E+
Sbjct: 123 FDELDKLGFPLVVKPNSGGSSVGVKIVYDKDELIS--MLETVFEWDSEVVIEKYIKGDEI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC +     L +  I    ++F+ Y  KY    +   +  ++P ++ + V + +   ++A
Sbjct: 181 TCSIFDGKQLPIISIR-HAAEFFDYNAKYDDAGTIEEV-IELPAELKERVNKASLACYKA 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           + C   +R D +        + +EIN  PGMT  S+ P+ AA AG  + +LL  ++E + 
Sbjct: 239 LKCSVYARVDMMV--KDGIPYVMEINTLPGMTQASLLPKSAAAAGIEYSKLLDMIIETSL 296

Query: 298 CLR 300
            +R
Sbjct: 297 RVR 299


>gi|119717515|ref|YP_924480.1| D-alanine--D-alanine ligase [Nocardioides sp. JS614]
 gi|119538176|gb|ABL82793.1| D-alanine--D-alanine ligase [Nocardioides sp. JS614]
          Length = 373

 Score =  301 bits (771), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 100/359 (27%), Positives = 161/359 (44%), Gaps = 66/359 (18%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +AV+ GG SSE  +S  +  +  +A++ A + V  I +      VL    P         
Sbjct: 10  VAVVFGGKSSEHAISCVTAGSVLAAIDRAAYDVVPIGIATDGRWVLESGDPERLRIEGPD 69

Query: 52  --------------------------------------DLAFNVLHGNFGEDGLVQAILE 73
                                                 D+ F +LHG +GEDG +Q +LE
Sbjct: 70  RLPHVDGERAAIALAPDTASTSLVVTEPAQPPRALGEVDVVFPLLHGPWGEDGTIQGLLE 129

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--------DSQHLIS 125
           +  + Y  +G+LASA+SMDK   K V+++ G+PV PS+ V                  I 
Sbjct: 130 MAGVRYVGAGVLASAVSMDKAYMKVVLAAAGLPVLPSVTVTTREWARDAAGCRARADEIG 189

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE-QYVDGIELTCGVM-- 182
            P  +KP +GGSSLGI  +     +  D     ++ H  ++L+E   +D  E+ CGV+  
Sbjct: 190 YPLFVKPARGGSSLGISKVHDATEL--DGAIELAFEHDPKVLVETAAIDAREVECGVLQA 247

Query: 183 ----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQA 237
                + S+          +FY +  KY     T +  PA +P  + ++V+ L+  A +A
Sbjct: 248 VDGTPETSVPAEIRISGAHEFYDFAAKYLPEEHTELDVPADLPEALVRQVRELSVRAFEA 307

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +GC G++R DF   P   ++   EIN  PG TP S+FP M A +G  +  L+  +++ A
Sbjct: 308 VGCEGLARVDFFVLP-GERLVVNEINTMPGFTPTSMFPRMWAASGLDYPALVDRLIQLA 365


>gi|260206305|ref|ZP_05773796.1| D-alanyl-alanine synthetase A [Mycobacterium tuberculosis K85]
          Length = 379

 Score =  301 bits (771), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 99/360 (27%), Positives = 161/360 (44%), Gaps = 67/360 (18%)

Query: 5   MGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD------------ 52
            GG S+E  +S  S  +    L+   F V  + +  +   VL    PD            
Sbjct: 17  FGGRSNEHAISCVSAGSILRNLDSRRFDVIAVGITPAGSWVLTDANPDALTITNRELPQV 76

Query: 53  -----------------------------------LAFNVLHGNFGEDGLVQAILELLEI 77
                                              + F VLHG +GEDG +Q +LEL  +
Sbjct: 77  KSGSGTELALPADPRRGGQLVSLPPGAGEVLESVDVVFPVLHGPYGEDGTIQGLLELAGV 136

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQ--HLISPPYVIKPL 133
           PY  +G+LASA+ MDK  +K+++++ G+PV    ++   R T+  Q    +  P  +KP 
Sbjct: 137 PYVGAGVLASAVGMDKEFTKKLLAADGLPVGAYAVLRPPRSTLHRQECERLGLPVFVKPA 196

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG--DASLDVT- 190
           +GGSS+G+  +     +P  +  + +  H  ++++E  + G EL CGV+   D +L+ + 
Sbjct: 197 RGGSSIGVSRVSSWDQLPAAV--ARARRHDPKVIVEAAISGRELECGVLEMPDGTLEAST 254

Query: 191 --EIAVP-----KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
             EI V      +  FY +  KY    +   +PAK+   + + +++LA  A  AI CRG+
Sbjct: 255 LGEIRVAGVRGREDSFYDFATKYLDDAAELDVPAKVDDQVAEAIRQLAIRAFAAIDCRGL 314

Query: 244 SRSDFLFDPLS----RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
           +R DF                EIN  PG T +S++P M A +G  +  LL  M+E A   
Sbjct: 315 ARVDFFLTDDGPVINDGPVINEINTMPGFTTISMYPRMWAASGVDYPTLLATMIETALAR 374


>gi|320094156|ref|ZP_08025969.1| D-alanine-D-alanine ligase [Actinomyces sp. oral taxon 178 str.
           F0338]
 gi|319978958|gb|EFW10488.1| D-alanine-D-alanine ligase [Actinomyces sp. oral taxon 178 str.
           F0338]
          Length = 378

 Score =  301 bits (771), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 98/365 (26%), Positives = 156/365 (42%), Gaps = 70/365 (19%)

Query: 3   VLMGGISSEREVSLSSGKACAS-------------------------------------- 24
           ++ GG SSE EVS ++                                            
Sbjct: 11  IVFGGRSSEHEVSCATAAGILRAIDRDKWDVVPLGITKDGQWVPASDDPALLEFKDGKGQ 70

Query: 25  ---------ALEDAG-------FKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLV 68
                    AL   G       +     D    V       + D+   +LHG +GEDG +
Sbjct: 71  SVEAGATRVALTPGGGSLVELSYDGDPADPGARVVGARDLGRVDIVLPLLHGPYGEDGTI 130

Query: 69  QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-------- 120
           Q +LE+ E+ Y   G+ +SA+SMDK  +K V++  G+ V    L+     ++        
Sbjct: 131 QGLLEMAEVRYVGCGVASSAVSMDKHLTKVVLAGAGIDVGRWELITPLQWEADQGACLER 190

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P  +KP + GSS+GI  ++  + +   +    + NH  ++++E  V G E+ CG
Sbjct: 191 AAALGFPVFVKPCRAGSSVGISKVESREGL--AVAVKEAQNHDPRVIVEAGVVGREVECG 248

Query: 181 VMGDAS------LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
           V+G  S        + EI VP  +FY YE KY       V PA++     + V+  A  A
Sbjct: 249 VLGGRSDWRSATAPLGEIEVPDGEFYDYEHKYVDDVVGLVCPAEVAPAYEERVRETALRA 308

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             A+ C G++R DF  D  S  V   E+N  PG TP+S+FP+M A AG  +  L+  ++E
Sbjct: 309 FDALECEGLARVDFFLDEDSGTVLVNEVNTMPGFTPISMFPQMWAAAGVDYPSLIDALLE 368

Query: 295 DASCL 299
           +A+  
Sbjct: 369 EAAAR 373


>gi|228915195|ref|ZP_04078790.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228844426|gb|EEM89482.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 304

 Score =  301 bits (771), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 83/303 (27%), Positives = 157/303 (51%), Gaps = 9/303 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGG+SSE++VS+ +G    + L+   +++  I ++  + L+      D A   LHG
Sbjct: 3   IGVIMGGVSSEKQVSIMTGNEMIANLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117
            +GEDG VQ  LE L IPY+ S +L+S + MDK  SK+++   G+     I + +     
Sbjct: 63  KYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNISKKILRYEGIETPDWIELTKMEDLN 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
           +D    +  P V+KP  GGSS+G+ ++     +    +  + +    +++IE+Y+ G E+
Sbjct: 123 LDELDKLGFPLVVKPNSGGSSVGVKIVYNKDELIS--MLETVFEWDSEVVIEKYIKGDEI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC +     L +  I    ++F+ Y  KY    +   +  ++P ++ + V + +   ++A
Sbjct: 181 TCSIFDGKQLPIISIR-HAAEFFDYNAKYDDAGTIEEV-IELPAELKERVNKASLACYKA 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           + C   +R D +        + +E+N  PGMT  S+ P+ A   G  + +LL  ++E + 
Sbjct: 239 LKCSVYARVDMMV--KDGIPYVMEVNTLPGMTQASLLPKSAEAEGIDYSKLLDMIIETSL 296

Query: 298 CLR 300
            +R
Sbjct: 297 RVR 299


>gi|255325982|ref|ZP_05367072.1| D-alanine--D-alanine ligase [Rothia mucilaginosa ATCC 25296]
 gi|255296997|gb|EET76324.1| D-alanine--D-alanine ligase [Rothia mucilaginosa ATCC 25296]
          Length = 372

 Score =  300 bits (770), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 91/361 (25%), Positives = 151/361 (41%), Gaps = 68/361 (18%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50
           +A+L GG SSE  +SL +      A++   + V  I + R     L   +          
Sbjct: 7   VALLCGGRSSEHPISLITAAGVLGAIDRTAYDVITIGITRDGRWYLTDEQQLAELTAGTR 66

Query: 51  -------------------------------------PDLAFNVLHGNFGEDGLVQAILE 73
                                                 D+ F +LHG FGEDG VQ +LE
Sbjct: 67  GTAEFPEGTQQVFLPMGAGDSRLTLVDAEGNVTRTAPVDVVFPLLHGPFGEDGTVQGLLE 126

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH---------LI 124
           + ++ Y   G+ ASA+ MDK   K    S G+ V P  +V     + +           +
Sbjct: 127 MADLRYVGCGVTASAVGMDKHFMKVAFESAGLEVGPYEVVTNRQWEHEDREQILERVLKL 186

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
             P  +KP + GSS GI  +   + +   +    +  H  +++IE  + G E+ C V+  
Sbjct: 187 GFPMFVKPTRAGSSFGITKVDSVEELVPAI--EEARRHDPKIIIEAGIVGREIECAVLDG 244

Query: 185 ASLDV--------TEIAVPKSDFYSYELKYSSLNS-THVLPAKIPLDIYKEVQRLAFLAH 235
              ++         E+      FY +E KY S +S   V PA +P D+ + ++ LA  A 
Sbjct: 245 HHGEMPRASYPGEIEVVDQDHGFYDFEAKYVSESSAVTVCPANLPQDVQERLRELAVKAF 304

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
            A+   G+SR+DF +     ++   E+N  PG TP+S++  M    G S+ +L+  ++  
Sbjct: 305 LALDGEGLSRADFFYTE-DGRLVINEVNTMPGFTPISMYKTMWENTGISYTDLISELLTL 363

Query: 296 A 296
           A
Sbjct: 364 A 364


>gi|313885390|ref|ZP_07819140.1| D-ala D-ala ligase N-terminal domain protein [Eremococcus coleocola
           ACS-139-V-Col8]
 gi|312619120|gb|EFR30559.1| D-ala D-ala ligase N-terminal domain protein [Eremococcus coleocola
           ACS-139-V-Col8]
          Length = 361

 Score =  300 bits (770), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 84/348 (24%), Positives = 159/348 (45%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLA------------- 47
           + VL GG+S E ++S+ S     +AL +A + V    +++    + A             
Sbjct: 3   IIVLYGGLSPEHDISILSATNVINALLEADYSVQPYYINKEGKWLKAPLVTEKLASDTLL 62

Query: 48  ----------------------------HLKPDLAFNVLHGNFGEDGLVQAILELLEIPY 79
                                            + F VLHG  GEDG +Q  LE+L +PY
Sbjct: 63  QLKQAHAASWGDGKGLTSTGVWIQPGQIAEDDAVVFPVLHGPNGEDGTIQGFLEVLNLPY 122

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVN---------RFTMDSQHLISPPYVI 130
             +G+ ASA  MDK+ SKQ+    G+P  P +  +         R+    +  +  P+ +
Sbjct: 123 VGAGVTASATGMDKIISKQLFDQAGLPQVPYVYFDKRDWLQDQSRWIQKCEGNLLYPFFV 182

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190
           KP   GSS+G+  ++  Q +   +  +  ++   ++++EQ +   E    V+G+  +  +
Sbjct: 183 KPANMGSSVGVSRVENSQELIKAVDVALEFDR--RIVVEQGISANECEVAVLGNDDIHAS 240

Query: 191 EIA--VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
            +   V  SDFY Y+ KY +      +PA +P  +  +++  A  A++A+   G++R+DF
Sbjct: 241 VVGRLVKSSDFYDYDEKYINNTVEMEIPANLPEAVSDKIKDYALKAYRAVDGTGLTRADF 300

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                +  ++  E+N  PG T  S++P +    G ++R+L+  +++ A
Sbjct: 301 FVTA-NYDIYINEVNTMPGFTQFSMYPSLWQATGLNYRDLIDELIQLA 347


>gi|256824924|ref|YP_003148884.1| D-alanine--D-alanine ligase [Kytococcus sedentarius DSM 20547]
 gi|256688317|gb|ACV06119.1| D-alanine--D-alanine ligase [Kytococcus sedentarius DSM 20547]
          Length = 376

 Score =  300 bits (770), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 98/358 (27%), Positives = 162/358 (45%), Gaps = 65/358 (18%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +AV+ GG SSE  VS ++  +  +A++   ++V  I + R    V++   P         
Sbjct: 14  VAVVFGGRSSEHPVSCATAASVMAAIDSTKWEVVPIGITREGQWVVSTATPEELAISAGH 73

Query: 52  -------------------------------------DLAFNVLHGNFGEDGLVQAILEL 74
                                                D+ F +LHG FGEDG +Q +LE+
Sbjct: 74  IPEVAGGDEHVIVPLGSAQTDLQVVRQGLPPELLGEVDVVFPLLHGPFGEDGTLQGLLEM 133

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ--------HLISP 126
            ++ Y   G+ +SA+ MDK   K +  + G+ V P  ++      +           +  
Sbjct: 134 ADLRYVGCGVASSAMMMDKHHMKVIFEAAGLEVGPYRVITDRMWRADRQQALASVEGLEL 193

Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD-- 184
           P  +KP + GSS+GI  +     +   +   ++  H  ++++EQ +DG EL C V+    
Sbjct: 194 PVFVKPARAGSSMGITRVDDLADLEQAV--EAAREHDLKVVVEQGIDGRELECAVLDGHG 251

Query: 185 ----ASLDVTEIAVPKS-DFYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAI 238
                +  V EI V     FY +E KY   +ST +  PA+ P  + +E++RLA  A  A 
Sbjct: 252 AEPPRASTVGEIVVSGGHGFYDFEAKYLDESSTTLSAPAEAPEQVIEEIRRLAVHAFDAA 311

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            C G++R DF   P  R +   EIN  PG TP S++P + A +G S+ EL+  ++  A
Sbjct: 312 DCEGLARVDFFVTPDER-ILINEINTMPGFTPYSMYPALWAASGISYPELIDELLTLA 368


>gi|289575688|ref|ZP_06455915.1| D-alanyl-alanine synthetase A [Mycobacterium tuberculosis K85]
 gi|289540119|gb|EFD44697.1| D-alanyl-alanine synthetase A [Mycobacterium tuberculosis K85]
          Length = 364

 Score =  300 bits (770), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 99/360 (27%), Positives = 161/360 (44%), Gaps = 67/360 (18%)

Query: 5   MGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD------------ 52
            GG S+E  +S  S  +    L+   F V  + +  +   VL    PD            
Sbjct: 2   FGGRSNEHAISCVSAGSILRNLDSRRFDVIAVGITPAGSWVLTDANPDALTITNRELPQV 61

Query: 53  -----------------------------------LAFNVLHGNFGEDGLVQAILELLEI 77
                                              + F VLHG +GEDG +Q +LEL  +
Sbjct: 62  KSGSGTELALPADPRRGGQLVSLPPGAGEVLESVDVVFPVLHGPYGEDGTIQGLLELAGV 121

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQ--HLISPPYVIKPL 133
           PY  +G+LASA+ MDK  +K+++++ G+PV    ++   R T+  Q    +  P  +KP 
Sbjct: 122 PYVGAGVLASAVGMDKEFTKKLLAADGLPVGAYAVLRPPRSTLHRQECERLGLPVFVKPA 181

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG--DASLDVT- 190
           +GGSS+G+  +     +P  +  + +  H  ++++E  + G EL CGV+   D +L+ + 
Sbjct: 182 RGGSSIGVSRVSSWDQLPAAV--ARARRHDPKVIVEAAISGRELECGVLEMPDGTLEAST 239

Query: 191 --EIAVP-----KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
             EI V      +  FY +  KY    +   +PAK+   + + +++LA  A  AI CRG+
Sbjct: 240 LGEIRVAGVRGREDSFYDFATKYLDDAAELDVPAKVDDQVAEAIRQLAIRAFAAIDCRGL 299

Query: 244 SRSDFLFDPLS----RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
           +R DF                EIN  PG T +S++P M A +G  +  LL  M+E A   
Sbjct: 300 ARVDFFLTDDGPVINDGPVINEINTMPGFTTISMYPRMWAASGVDYPTLLATMIETALAR 359


>gi|317153980|ref|YP_004122028.1| D-alanine--D-alanine ligase [Desulfovibrio aespoeensis Aspo-2]
 gi|316944231|gb|ADU63282.1| D-alanine/D-alanine ligase [Desulfovibrio aespoeensis Aspo-2]
          Length = 304

 Score =  300 bits (770), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 105/303 (34%), Positives = 155/303 (51%), Gaps = 6/303 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLA-HLKPDLAFNVLH 59
           + ++ GG S EREVSLS  K   +ALE+ G +V+  D  +    ++    + D AF  LH
Sbjct: 3   VILIAGGWSDEREVSLSGAKKIRTALEELGHRVTFFDPAQDFRHLVRTAREADFAFINLH 62

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT-M 118
           G  GEDGL+QA+L+    PY  +G  AS L++DK  SK+V  + G+   P   +      
Sbjct: 63  GTPGEDGLIQAMLDKAGCPYQGAGAAASYLALDKGASKEVFETLGIDTPPWQFITPTQGA 122

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           D+   +  P  +KP KGGSSLG+ +++     P  L +  +       L+E ++ G+ELT
Sbjct: 123 DTPLALPLPVFVKPNKGGSSLGMSLVRTAGEFPSALSKVFA--MCQSALVEIFIPGVELT 180

Query: 179 CGVMGDASLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           C V+GD  L +  I       F+ YE KY++  +  V PA +   + + VQ     AH A
Sbjct: 181 CAVLGDRPLPLIMITPKAGAPFFDYENKYAADGAEEVCPAPVSDAVTRLVQERMLAAHNA 240

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           +G  G SR DF+        + LEIN  PGMTP S+ P  A   G SF  L+  ++    
Sbjct: 241 LGLTGYSRGDFIL-AADGTPYLLEINTLPGMTPTSLLPRAAGQVGLSFAALISELIRLGL 299

Query: 298 CLR 300
             R
Sbjct: 300 EER 302


>gi|319893032|ref|YP_004149907.1| D-alanine--D-alanine ligase [Staphylococcus pseudintermedius
           HKU10-03]
 gi|317162728|gb|ADV06271.1| D-alanine--D-alanine ligase [Staphylococcus pseudintermedius
           HKU10-03]
 gi|323463913|gb|ADX76066.1| D-alanine--D-alanine ligase [Staphylococcus pseudintermedius ED99]
          Length = 356

 Score =  300 bits (770), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 85/342 (24%), Positives = 159/342 (46%), Gaps = 46/342 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGF------------------------KVSQI 36
           + ++ GG S+E +VS+ + +   +A++ A +                         V  +
Sbjct: 6   LCIIYGGKSAEHDVSILTAQNVLNAIDKARYHIDIIYITNDGQWKKMDNITEDITDVEAL 65

Query: 37  DVDRSVGLVLAHL--------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
            +D      ++ +        + D  F +LHG  GEDG +Q + E+L+IPY  +G+LA++
Sbjct: 66  RIDDVPTSDISAMLTQSSQGGRYDAVFPLLHGPNGEDGTIQGLFEVLDIPYVGNGVLAAS 125

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSL 139
            SMDK+  KQ+ +  G+P  P +   R   +             ++ P  +KP   GSS+
Sbjct: 126 SSMDKLVMKQLFAHRGLPQLPYVSFLRSEYEKYRKNIIKLVHDKLAFPVFVKPANLGSSV 185

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKS 197
           GI   + + ++   + ++  ++   +L+IEQ VD  E+   V+G+   + T     V   
Sbjct: 186 GISKCEDEAALIKGIEEAFQFDR--KLVIEQGVDAREIEVAVLGNDYPETTWPGEVVKDV 243

Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
            FY Y+ KY        +PA +  D+   ++ +A  A +A  C G+ R+DF       ++
Sbjct: 244 AFYDYKSKYKDGKVKLAIPADLDQDVQMTLRNMAVEAFKATDCSGLLRADFFVTA-DNQI 302

Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
           +  E N  PG T  S++P++    G S+ EL+  +++ A   
Sbjct: 303 YINETNAMPGFTAYSMYPKLWENMGVSYSELITKLIDLAKAR 344


>gi|254967090|gb|ACT97587.1| putative D-alanine-D-alanine ligase [uncultured organism]
 gi|254967092|gb|ACT97588.1| putative D-alanine-D-alanine ligase [uncultured organism]
          Length = 372

 Score =  300 bits (770), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 91/361 (25%), Positives = 152/361 (42%), Gaps = 68/361 (18%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50
           +A+L GG SSE  +SL +      A++   ++V  I + R     L   +          
Sbjct: 7   VALLCGGRSSEHPISLITAAGVLGAIDRTAYEVITIGITRDGRWYLTDEQQLAELTAGTR 66

Query: 51  -------------------------------------PDLAFNVLHGNFGEDGLVQAILE 73
                                                 D+ F +LHG FGEDG VQ +LE
Sbjct: 67  GTAEFPEGTQQVFLPMGTGDSRLTLVDAEGIVTRTAPVDVVFPLLHGPFGEDGTVQGLLE 126

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH---------LI 124
           + ++ Y   G+ ASA+ MDK   K    S G+ V P  +V     + +           +
Sbjct: 127 MADLHYVGCGVTASAVGMDKHFMKVAFESAGLEVGPYEVVTNREWEHEDREQILERVLKL 186

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
             P  +KP + GSS GI  +   + +   +    +  H  +++IE  + G E+ C V+  
Sbjct: 187 GFPLFVKPTRAGSSFGITKVDSVEELVPAI--EEARRHDPKIIIEAGIVGREIECAVLDG 244

Query: 185 ASLDV--------TEIAVPKSDFYSYELKYSSLNS-THVLPAKIPLDIYKEVQRLAFLAH 235
              ++         E+      FY +E KY S +S   V PA +P D+ + ++ LA  A 
Sbjct: 245 HHGEMPRASYPGEIEVVDQDHGFYDFEAKYVSESSAVTVCPANLPQDVQERLRELAVKAF 304

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
            A+   G+SR+DF +     ++   E+N  PG TP+S++  M    G S+ +L+  ++  
Sbjct: 305 LALDGEGLSRADFFYTE-DGRLVINEVNTMPGFTPISMYKTMWENTGISYTDLISELLTL 363

Query: 296 A 296
           A
Sbjct: 364 A 364


>gi|206973874|ref|ZP_03234792.1| D-alanine--D-alanine ligase [Bacillus cereus H3081.97]
 gi|206748030|gb|EDZ59419.1| D-alanine--D-alanine ligase [Bacillus cereus H3081.97]
          Length = 304

 Score =  300 bits (770), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 86/303 (28%), Positives = 158/303 (52%), Gaps = 9/303 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGG+SSE++VS+ +G    + L+   +++  I ++  + L+      D A   LHG
Sbjct: 3   VGVIMGGVSSEKQVSIMTGNEMIANLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF---T 117
            +GEDG VQ  LE L IPY+ S +L+S + MDK  SK+++   G+     I + +     
Sbjct: 63  KYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNMSKKILRYEGIETPDWIELTKMEDLD 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            D    +  P V+KP  GGSS+G+ ++     +    +  + +    +++IE+Y+ G E+
Sbjct: 123 FDELDKLGFPLVVKPNSGGSSVGVKIVYDKDELIS--MLETVFEWDSEVVIEKYIKGDEI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC +     L +  I    ++F+ Y  KY    +   +  ++P ++ + V + +   ++A
Sbjct: 181 TCSIFDGKQLPIISIR-HAAEFFDYNAKYDDAGTIEEV-IELPAELKERVNKASLACYKA 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           + C   +R D +        + +EIN  PGMT  S+ P+ AA AG  + +LL  ++E + 
Sbjct: 239 LKCSVYARVDMMV--KDGIPYVMEINTLPGMTQASLLPKSAAAAGIEYSKLLDMIIETSL 296

Query: 298 CLR 300
            +R
Sbjct: 297 RVR 299


>gi|296876858|ref|ZP_06900906.1| D-alanine--D-alanine ligase [Streptococcus parasanguinis ATCC
           15912]
 gi|296432360|gb|EFH18159.1| D-alanine--D-alanine ligase [Streptococcus parasanguinis ATCC
           15912]
          Length = 348

 Score =  300 bits (770), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 94/330 (28%), Positives = 159/330 (48%), Gaps = 41/330 (12%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQ--------------------------- 35
           +L GG S+EREVS+ S ++   A++   F V                             
Sbjct: 8   LLYGGRSAEREVSVLSAESVMRAIDYQAFSVQTYFITQSGDFIQTQAFEEKPADDEKLMT 67

Query: 36  ---IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
              +D  + V     + +  + F VLHG  GEDG +Q  LE+L++PY   GILAS+++MD
Sbjct: 68  NDTVDWSKKVAPSAIYKEGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCGILASSVAMD 127

Query: 93  KMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           K+ +K+V+ S G+P  P + V             +  +S P   KP   GSS+GI   + 
Sbjct: 128 KITTKRVLESAGIPQVPYVAVVEGDDLEEKIAAIEANLSYPVFTKPSNMGSSVGISKSEN 187

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYEL 204
              +   L    ++ +  ++L+EQ V+  E+  G++G+  +  T     V    FY Y+ 
Sbjct: 188 QTELRTAL--ELAFKYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDYDA 245

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           KY     T  +PA++  ++ K ++  A  A +AIG  G++R DF +     ++F  E+N 
Sbjct: 246 KYIDNKITMAIPAQLDPEVVKTMRTNAEKAFRAIGGLGLARCDFFYTDK-GEIFLNELNT 304

Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            PG T  S++P +    G ++ +L+  +VE
Sbjct: 305 MPGFTQWSMYPLLWDNMGLNYTDLITKLVE 334


>gi|251799340|ref|YP_003014071.1| D-alanine--D-alanine ligase [Paenibacillus sp. JDR-2]
 gi|247546966|gb|ACT03985.1| D-alanine/D-alanine ligase [Paenibacillus sp. JDR-2]
          Length = 303

 Score =  300 bits (770), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 97/303 (32%), Positives = 160/303 (52%), Gaps = 9/303 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGGISSERE+SL +G+   + L+   ++V  I+++    L+      D A   LHG
Sbjct: 4   IGVIMGGISSEREISLLTGQEMIANLDRGKYEVVPIEINTKRDLIDKTAGIDFALLALHG 63

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG VQ  LE L IPY+  G+L+S++SMDK  +K+++   G+     I V      +
Sbjct: 64  KYGEDGTVQGTLESLGIPYSGCGVLSSSVSMDKELAKKLIRFDGILTADWINVASMEELA 123

Query: 121 Q---HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
                 +  P V+KP  GGSS+   ++K    +   + ++  W   D ++IEQ+V G E+
Sbjct: 124 AANVERLGLPVVVKPNSGGSSIATRLVKTQDEVAEAVAEALKW--DDSVMIEQFVGGEEI 181

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC V+    L +  I    S+F+ ++ KY    +T  +  ++P D+   V+  A   ++A
Sbjct: 182 TCAVLSGKLLPIVSIK-ANSEFFDFDSKYQDGGATEEV-IELPADVQARVEASALGCYKA 239

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           + C   SR D +        + LE N  PG+T  S+ P+ A  AG  F ELL ++++ + 
Sbjct: 240 LKCSVYSRIDMII--KDGVPYVLEANTLPGLTKNSLLPKAAKAAGIKFNELLDYIIDYSL 297

Query: 298 CLR 300
             R
Sbjct: 298 EER 300


>gi|229030300|ref|ZP_04186352.1| D-alanine--D-alanine ligase [Bacillus cereus AH1271]
 gi|228731017|gb|EEL81947.1| D-alanine--D-alanine ligase [Bacillus cereus AH1271]
          Length = 311

 Score =  300 bits (770), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 86/303 (28%), Positives = 161/303 (53%), Gaps = 9/303 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGG+SSE++VS+ +G    + L+ + +++  I +D  + L+      D A   LHG
Sbjct: 10  IGVIMGGVSSEKQVSIMTGNEMIAHLDKSKYEIVPITLDEKMDLIEKAKDIDFALLALHG 69

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117
            +GEDG VQ  LE L IPY+ S +L+S + MDK  SK+++   GV     I + +     
Sbjct: 70  KYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNISKKILRYEGVETPDWIELTKMADLN 129

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
           +D    +  P V+KP  GGSS+G+ ++     +    +  + +    +++IE+Y+ G E+
Sbjct: 130 LDELDKLGFPLVVKPNSGGSSVGVKIVNDKDELIS--MLETVFEWDSEVVIEKYIKGDEI 187

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC +     L +  I    ++F+ Y  KY  +++   +  ++P ++ + V + +   ++A
Sbjct: 188 TCSIFDGKQLPIISIR-HAAEFFDYNAKYDDVSTIEEV-IELPAELKERVNKASLACYRA 245

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           + C   +R D +        + +E+N  PGMT  S+ P+ A  AG  + +LL  ++E + 
Sbjct: 246 LKCSVYARVDMMV--KDGIPYVMEVNTLPGMTQASLLPKSADAAGIQYSKLLDMIIETSL 303

Query: 298 CLR 300
            +R
Sbjct: 304 KIR 306


>gi|269118899|ref|YP_003307076.1| D-alanine/D-alanine ligase [Sebaldella termitidis ATCC 33386]
 gi|268612777|gb|ACZ07145.1| D-alanine/D-alanine ligase [Sebaldella termitidis ATCC 33386]
          Length = 305

 Score =  300 bits (770), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 95/298 (31%), Positives = 148/298 (49%), Gaps = 9/298 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+ GGISSEREVSL SG+     L    + V  I ++    +  +    D  F  LHG
Sbjct: 6   IGVVRGGISSEREVSLKSGEGIIRELNKDKYDVKDIVLNDKNDIFTSLDGVDFVFLGLHG 65

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118
            FGEDG +QAILE ++IPYT  G+LAS+L MDK  +K ++ S GV     I V       
Sbjct: 66  KFGEDGKIQAILETMDIPYTGCGVLASSLCMDKDITKHIMRSYGVRTAKWISVREGEECD 125

Query: 119 --DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
             ++   +    + KP  GGSS+G+  IK +Q     L     +    +++IE+ + G+E
Sbjct: 126 YSEAAAYLGEDIIAKPNSGGSSVGVHFIKNEQEFYEALKD--IFTIDKEVMIEEVLRGVE 183

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           ++  ++         I      F+ Y  KY    +   +  +   ++  E+  L   A+ 
Sbjct: 184 ISVPIIDGKVYPTLCIEPKAGTFFDYASKYEVGGADEYV-VEFEKELQDEINELTKTAYH 242

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           A+ C G +R DF+      K + +EIN  PGMT  S+ P+   + G S+ ELL  ++E
Sbjct: 243 AVKCEGYARIDFML--KDNKPYLMEINTLPGMTMTSLVPKSLKHLGVSYSELLDKLIE 298


>gi|255324604|ref|ZP_05365721.1| D-alanine--D-alanine ligase [Corynebacterium tuberculostearicum
           SK141]
 gi|255298510|gb|EET77810.1| D-alanine--D-alanine ligase [Corynebacterium tuberculostearicum
           SK141]
          Length = 353

 Score =  300 bits (770), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 96/351 (27%), Positives = 166/351 (47%), Gaps = 56/351 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL-------------VLA 47
           +AV+ GG S+E  VS  S  A  + L+   F+V  I + R                 V+ 
Sbjct: 7   VAVIYGGRSTEHSVSCVSAGAIMNHLDPEKFEVVPIGITREGTWTPGTTEGLEIVDGVMP 66

Query: 48  HLKP----------------------------DLAFNVLHGNFGEDGLVQAILELLEIPY 79
            + P                            D+ F +LHG FGEDG +Q + EL  +PY
Sbjct: 67  EVNPGAELTLSLDPNARGQFHNVTDGTLFAEVDVVFPILHGPFGEDGTIQGLFELSGLPY 126

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFTMDSQHLISPPYVIKPLKGG 136
              G+LAS++ MDK  +K+V+++  +PV P +++      + D +  +  P  +KP +GG
Sbjct: 127 VGPGVLASSVGMDKEFTKKVLAAADLPVAPEVILKGRTELSEDEKQRLGLPVFVKPARGG 186

Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM--GDASLDVTEIAV 194
           SS+G+  +   +  P  +  +      +++L+E  + G E+  GV+   D +L  +  A+
Sbjct: 187 SSIGVSKVNSWEEFPAAVDLAL--EDDEKILVEPEIVGQEVEIGVLHYADGTLLASVPAL 244

Query: 195 ------PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                     FY ++ KY     T  +PA    ++ ++++ +A  A +A+ C G+SR DF
Sbjct: 245 LAGIDDSDEGFYGFDTKYLDNVVTAEIPAPFAPELTEKLRDMAIRAFEALNCEGLSRVDF 304

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
                S  V+  EIN  PG TP+S++P++ A +G  +  LL  ++E A   
Sbjct: 305 FVTEES--VYINEINTLPGFTPISMYPQVLAASGVEYPALLEALIEQALAK 353


>gi|322392710|ref|ZP_08066170.1| D-alanine-D-alanine ligase [Streptococcus peroris ATCC 700780]
 gi|321144702|gb|EFX40103.1| D-alanine-D-alanine ligase [Streptococcus peroris ATCC 700780]
          Length = 347

 Score =  300 bits (769), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 96/334 (28%), Positives = 159/334 (47%), Gaps = 41/334 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKV--------------------------- 33
           + +L GG S+ER+VS+ S ++   A+    F V                           
Sbjct: 5   IILLYGGRSAERKVSVLSAESVMRAVNYDHFTVKTFFISQSGDFIKTQEFDQTPSQDERL 64

Query: 34  ---SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
                ID D+ +     + +  + F VLHG  GEDG VQ  LE+L++PY    IL+S+L+
Sbjct: 65  MTNETIDWDQKIAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLA 124

Query: 91  MDKMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLISPPYVIKPLKGGSSLGIIVI 144
           MDK+ +K+V+ S G+   P + +           + +  ++ P   KP   GSS+GI   
Sbjct: 125 MDKITTKRVLESAGIAQVPYVAIVEGDDLVSKIAEVEEKLNYPVFTKPSNMGSSVGISKS 184

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202
           +    +   L    ++ +  ++L+EQ V+  E+  G++G+  +  +     V    FY Y
Sbjct: 185 ENQAELRQALDL--AFKYDSRVLVEQGVNAREIEVGLLGNYDVKSSLPGEVVKDVAFYDY 242

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
           E KY     T  +PAK+  D+   +++ A  A +AIG  G+SR DF +     +VF  E+
Sbjct: 243 EAKYIDNKITMDIPAKLSDDVIATMRKNAETAFRAIGGLGLSRCDFFYTDK-GEVFLNEL 301

Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           N  PG T  S++P +    G  + EL+  +VE A
Sbjct: 302 NTMPGFTQWSMYPLLWDNMGIPYPELIERLVELA 335


>gi|317125447|ref|YP_004099559.1| D-alanine--D-alanine ligase [Intrasporangium calvum DSM 43043]
 gi|315589535|gb|ADU48832.1| D-alanine--D-alanine ligase [Intrasporangium calvum DSM 43043]
          Length = 394

 Score =  300 bits (769), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 100/362 (27%), Positives = 157/362 (43%), Gaps = 65/362 (17%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +A++ GG SSE  VS ++      A++   + +  I V R    VL    P         
Sbjct: 32  VAIIFGGRSSEHAVSCATAAGVMRAIDRDKYDIVPIGVSRDGQWVLVADDPARFELTAGR 91

Query: 52  -------------------------------------DLAFNVLHGNFGEDGLVQAILEL 74
                                                D+   +LHG FGEDG +Q  LEL
Sbjct: 92  TPEVLPDRAHVVLPLSTRDTALTVLEAGQPPRELGDVDVVLPLLHGPFGEDGTLQGFLEL 151

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--------RFTMDSQHLISP 126
            +I Y  SG+ ASA  MDK   K V +  G+PV P  ++            +DS   +  
Sbjct: 152 SDIRYVGSGVFASAAGMDKHYMKVVFAGHGLPVGPYAVITDRAWRADRAAALDSCAALDF 211

Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM---- 182
           P  +KP + GSS+GI  +     +   +    +  H  ++++E  + G E+ C V+    
Sbjct: 212 PVFVKPARAGSSMGISKVDDPGLLEAAI--ERAREHDPKVIVEAGITGREIECAVLEGHG 269

Query: 183 --GDASLDVTEIAVPKSD-FYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             G  +  V E+AV  +  FY +E KY +  +     PA +P  +  EV+RL+  A +A+
Sbjct: 270 TQGPRTSQVGEVAVHDNHAFYDFEAKYLAEADVDLSCPADVPAHVSDEVRRLSAAAFEAL 329

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           GC G++R D  +     +V   EIN  PG TP S++P M A +G  +  L+  ++  A  
Sbjct: 330 GCEGLARVDCFY-AEDGRVLINEINTMPGFTPHSMYPRMWAASGLPYTALIDELISLALV 388

Query: 299 LR 300
            R
Sbjct: 389 RR 390


>gi|228927668|ref|ZP_04090719.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228832012|gb|EEM77598.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 304

 Score =  300 bits (769), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 84/303 (27%), Positives = 159/303 (52%), Gaps = 9/303 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGG+SSE++VS+ +G    + L+   +++  I ++  + L+      D A   LHG
Sbjct: 3   IGVIMGGVSSEKQVSIMTGNEMIANLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117
            +GEDG VQ  LE L IPY+ S +L+S + MDK  SK+++   G+     I + +     
Sbjct: 63  KYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNISKKILRYEGIETPDWIELTKMEDLN 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            D    +  P V+KP  GGSS+G+ ++     +    +  + +    +++IE+Y+ G E+
Sbjct: 123 FDELDKLGFPLVVKPNSGGSSVGVKIVYNKDELIS--MLETVFEWDSEVVIEKYIKGEEI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC +     L +  I    ++F+ Y  KY + ++   +  ++P ++ + V + +   ++A
Sbjct: 181 TCSIFDGKQLPIISIR-HAAEFFDYNAKYDNASTIEEV-IELPAELKERVNKASLACYKA 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           + C   +R D +        + +E+N  PGMT  S+ P+ A  AG  + +LL  ++E + 
Sbjct: 239 LKCSVYARVDMMV--KDGIPYVMEVNTLPGMTQASLLPKSADAAGIHYSKLLDMIIETSL 296

Query: 298 CLR 300
            +R
Sbjct: 297 RVR 299


>gi|269798172|ref|YP_003312072.1| D-alanine/D-alanine ligase [Veillonella parvula DSM 2008]
 gi|282850401|ref|ZP_06259780.1| D-ala D-ala ligase N-terminal domain protein [Veillonella parvula
           ATCC 17745]
 gi|294793904|ref|ZP_06759041.1| D-alanine--D-alanine ligase [Veillonella sp. 3_1_44]
 gi|269094801|gb|ACZ24792.1| D-alanine/D-alanine ligase [Veillonella parvula DSM 2008]
 gi|282579894|gb|EFB85298.1| D-ala D-ala ligase N-terminal domain protein [Veillonella parvula
           ATCC 17745]
 gi|294455474|gb|EFG23846.1| D-alanine--D-alanine ligase [Veillonella sp. 3_1_44]
          Length = 310

 Score =  300 bits (769), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 101/305 (33%), Positives = 162/305 (53%), Gaps = 12/305 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59
           + VLMGG S E EVS  +G A A ALE  G+    ++++ R+V   +  L  ++ FN +H
Sbjct: 6   IIVLMGGPSKEAEVSRRTGAAIAEALESKGYNAQTLELNPRTVLKDIESLGGEIVFNAIH 65

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G +GEDG +Q +LE+ EIPYT SGI+A A+ M+K  SK V     +P   S   N     
Sbjct: 66  GRYGEDGALQGLLEMAEIPYTGSGIMAHAVGMNKKVSKDVFKGANIPTATSESFNGNLES 125

Query: 120 SQHLIS-------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
           ++ +I         P V+K    GSS+G+ +++ +  +   +  + +  +   L++EQ++
Sbjct: 126 AEAIIGHIRKQFTIPVVVKSATQGSSIGVTIVRDEAQLEAAV--TEALKYDPILVVEQFL 183

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
           DG E T  V+   +L V EI  P S  Y Y  KY+   + +++PA I  ++  E+QR+  
Sbjct: 184 DGREFTVSVLDGKALSVIEIR-PHSGEYDYTSKYTVGATEYLVPAPISEEMTAEMQRIGE 242

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           L ++ +   G+ R D + D     ++ LE N  PGMT  S+ P+ A   G  F  L   +
Sbjct: 243 LVYREVQGSGVIRVDIMTDHADN-MYVLEYNTVPGMTATSLVPKAAKEMGIDFPTLCEKI 301

Query: 293 VEDAS 297
           +  AS
Sbjct: 302 LLTAS 306


>gi|260584699|ref|ZP_05852445.1| D-alanine--D-alanine ligase [Granulicatella elegans ATCC 700633]
 gi|260157722|gb|EEW92792.1| D-alanine--D-alanine ligase [Granulicatella elegans ATCC 700633]
          Length = 359

 Score =  300 bits (769), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 82/349 (23%), Positives = 157/349 (44%), Gaps = 57/349 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           + V+ GG S+E ++S+ +  +    +    ++V  + ++R    +               
Sbjct: 5   IIVVYGGKSAEHDISILTAFSIIKEIYFDYYEVQPVYINRKGEWLKGEPLTGPVAFSEAL 64

Query: 46  ---------------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIP 78
                                      L   +  + F VLHG  GEDG +Q + E++++P
Sbjct: 65  RLEVSQEAHFATSEGEVSTGVLVTPYDLKEEEC-VVFPVLHGPNGEDGTIQGLFEMMDVP 123

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYV 129
           Y   G+LASA  MDK+ SKQ+    G+P  P +  N+              +  +  P  
Sbjct: 124 YVGCGVLASACGMDKITSKQLFQQAGLPQLPYVPFNKTQWKQNPESIFNKIEGTLIYPVF 183

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL-- 187
           +KP   GSS+GI   +  + +   ++++    +  ++++EQ ++  E+ C V+G+     
Sbjct: 184 VKPANMGSSVGISKAENREELTTAIVEAL--KYDRRIVVEQGIEAREIECAVLGNDEANT 241

Query: 188 DVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
            V    V  S FY Y  KY +   T  +PA+I  ++  +V+  +  A +AI   G++R D
Sbjct: 242 SVVGEIVKTSGFYDYNEKYINNTVTLEIPAQISDEVSAKVREYSAKAFRAIDGSGLTRCD 301

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           F     +  ++  E+N  PG T  S++P +    G S+++L+  +++ A
Sbjct: 302 FFLTE-TNDIYINEVNTLPGFTQFSMYPLLWEKTGISYKDLVEELIQLA 349


>gi|254967068|gb|ACT97572.1| putative D-alanine-D-alanine ligase [uncultured organism]
          Length = 356

 Score =  300 bits (769), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 95/350 (27%), Positives = 159/350 (45%), Gaps = 56/350 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           +AVL GGISSE ++S  S  +    L    +++  + + R                    
Sbjct: 3   LAVLFGGISSEHDISCLSAASILRNLNKDKYEIYPVGITRDGEWFYCPDCDPDRVESGAW 62

Query: 46  ---------------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIP 78
                                      +  ++ D  F VLHG  GEDG +Q +LEL  IP
Sbjct: 63  ERMTGKVKVVLAPDRGMHGMVLLREGEIEVVRLDCVFPVLHGVGGEDGTMQGLLELAGIP 122

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD----------SQHLISPPY 128
           Y   G+ ASA +MDK  +K+V+   GV      L  R+  +          ++ L + P 
Sbjct: 123 YVGCGVAASANTMDKALTKKVIEGTGVRQARYYLALRYDFERNAEAVVAAAAETLGAFPV 182

Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD 188
            +KP   GSS+G+        + L    + +     ++L+E+++DG E+ C V+G+    
Sbjct: 183 FVKPCSQGSSVGVAKANN--LLELAEGLTEALKLDTKVLVEEFIDGHEVECAVLGNLEPQ 240

Query: 189 VTEIAV--PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRS 246
            + +    P  +FY+++ KY   +S   +PA I  +    V++ A   + A+GCRG+SR 
Sbjct: 241 ASTVGEIAPTQEFYTFDAKYKDESSRLYIPAHITEEQLATVRQDAVRVYTALGCRGLSRV 300

Query: 247 DFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           DF     S +V + E+N  PG T +S++P++  Y G  + ELL  ++  A
Sbjct: 301 DFFVTHDSGEVVFNELNAIPGFTSISMYPKLFDYEGIGYAELLDRLISLA 350


>gi|228933903|ref|ZP_04096747.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228825779|gb|EEM71568.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
          Length = 304

 Score =  300 bits (769), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 84/303 (27%), Positives = 159/303 (52%), Gaps = 9/303 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGG+SSE++VS+ +G    + L+   +++  I ++  + L+      D A   LHG
Sbjct: 3   IGVIMGGVSSEKQVSIMTGNEMIAHLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117
            +GEDG VQ  LE L IPY+ S +L+S + MDK  SK+++   G+     I + +     
Sbjct: 63  KYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNISKKILRYEGIETPDWIELTKMEDLN 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
           +D    +  P V+KP  GGSS+G+ ++     +    +  + +    +++IE+Y+ G E+
Sbjct: 123 LDELDKLGFPLVVKPNSGGSSVGVKIVYNKDELIS--MLETVFEWDSEVVIEKYIKGEEI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC +     L +  I    ++F+ Y  KY   ++   +  ++P ++ + V + +   ++A
Sbjct: 181 TCSIFDGKQLPIISIR-HAAEFFDYNAKYDDASTIEEV-IELPAELKERVNKASLACYKA 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           + C   +R D +        + +E+N  PGMT  S+ P+ A  AG  + +LL  ++E + 
Sbjct: 239 LKCSVYARVDMMV--KDGIPYVMEVNTLPGMTQASLLPKSADAAGIHYSKLLDMIIETSL 296

Query: 298 CLR 300
            +R
Sbjct: 297 RVR 299


>gi|224477067|ref|YP_002634673.1| D-alanyl-alanine synthetase A [Staphylococcus carnosus subsp.
           carnosus TM300]
 gi|254767738|sp|B9DMH1|DDL_STACT RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|222421674|emb|CAL28488.1| putative D-alanine-D-alanine ligase A [Staphylococcus carnosus
           subsp. carnosus TM300]
          Length = 356

 Score =  300 bits (769), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 79/339 (23%), Positives = 152/339 (44%), Gaps = 46/339 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           + ++ GG S+E +VS+ + +   +A+    ++V  I +                      
Sbjct: 6   ICIIYGGKSAEHDVSILTAQNVLNAINKDDYQVDIIYITNDGAWKKKDDITENVEDVDSL 65

Query: 49  --------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
                                     F +LHG  GEDG +Q + E+L++PY  +G+LA++
Sbjct: 66  RLEEVEEGEISNLLTNSSSGQPYAAVFPLLHGPNGEDGTIQGLFEVLDLPYVGNGVLAAS 125

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSL 139
            +MDK+  KQ+ +  G+P  P +   R   +          +  +  P  +KP   GSS+
Sbjct: 126 STMDKLVMKQLFAHRGLPQLPYVSFLRSEYEKYQSNILKLVKDKLEFPVFVKPANLGSSV 185

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKS 197
           GI     ++ +   + ++  ++   +L+IEQ ++  E+   V+G+   + T+    V   
Sbjct: 186 GISKCNNEEELKSGIEEAFQFDR--KLVIEQGIEAREIEVAVLGNDYPETTQPGEVVKDV 243

Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
            FY Y+ KY        +PA++  ++   ++ +A  A +A  C G+ R+DF       ++
Sbjct: 244 AFYDYKSKYLDGKVQLSIPAELDSEVQTTLRNMAAEAFKATDCSGLLRADFFVTE-DNQI 302

Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           F  E N  PG T  S++P +    G S+ +L+  ++E A
Sbjct: 303 FINETNAMPGFTQYSMYPSLWENMGLSYADLITKLIELA 341


>gi|72161037|ref|YP_288694.1| D-alanyl-alanine synthetase A [Thermobifida fusca YX]
 gi|71914769|gb|AAZ54671.1| D-alanine--D-alanine ligase [Thermobifida fusca YX]
          Length = 371

 Score =  300 bits (769), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 99/362 (27%), Positives = 163/362 (45%), Gaps = 65/362 (17%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +AV+ GG SSE E+S  +  +  SA++   + +  I + R     L    P         
Sbjct: 9   VAVIFGGRSSEHEISCVTAGSVMSAIDTDRYDILPIGITRDGDWRLVTADPSELAIVDGK 68

Query: 52  ------------------------------------DLAFNVLHGNFGEDGLVQAILELL 75
                                               D+   +LHG FGEDG +Q +LEL 
Sbjct: 69  LPAVPDSGARLALALDTPGAFLEVAPDSLPRLVGQVDVVLPLLHGPFGEDGTIQGLLELA 128

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--------NRFTMDSQHLISPP 127
            + Y  +G+ ASA SMDK+  K ++++ G+   P + V         +  +D+   +   
Sbjct: 129 GVRYVGAGVFASAASMDKVFMKALLTAQGLKTGPYLAVSDRAWTRHRKRVLDNIAALGGV 188

Query: 128 YVIKPLKGGSSLGIIVIKKDQSIPLD-LLQSSSWNHGDQLLIEQYVDGIELTCGVMG--- 183
             +KP + GSS+GI  +              ++  H  ++++E  + G E+ CGV+    
Sbjct: 189 VFVKPARAGSSIGISRVPDATDTAAVTEAIEAARAHDPKVIVEAGIQGREIECGVLESLD 248

Query: 184 ----DASLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
               D SL   EI V +  DFY +E KY S +   + PA +P ++ + V++LA  A  A+
Sbjct: 249 GGEPDVSLPA-EIHVAEGYDFYDFEAKYLSNSGLSI-PADLPDEVTQRVRKLAAEAFDAL 306

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           GC G++R DF +     +++  EIN  PG TP S FP+M A +G  +  L+  ++  A  
Sbjct: 307 GCEGLARVDFFY-GDDGEIYINEINTMPGFTPASAFPQMWAASGLDYPALVDRLIRTALV 365

Query: 299 LR 300
            R
Sbjct: 366 RR 367


>gi|283457865|ref|YP_003362465.1| D-alanine-D-alanine ligase [Rothia mucilaginosa DY-18]
 gi|254967094|gb|ACT97589.1| putative D-alanine-D-alanine ligase [uncultured organism]
 gi|254967098|gb|ACT97591.1| putative D-alanine-D-alanine ligase [uncultured organism]
 gi|254967102|gb|ACT97593.1| putative D-alanine-D-alanine ligase [uncultured organism]
 gi|283133880|dbj|BAI64645.1| D-alanine-D-alanine ligase [Rothia mucilaginosa DY-18]
          Length = 372

 Score =  300 bits (769), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 91/361 (25%), Positives = 150/361 (41%), Gaps = 68/361 (18%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50
           +A+L GG SSE  +SL +      A++   + V  I + R     L   +          
Sbjct: 7   VALLCGGRSSEHPISLITAAGVLGAIDRTAYDVITIGITRDGRWYLTDEQQLAELTAGTR 66

Query: 51  -------------------------------------PDLAFNVLHGNFGEDGLVQAILE 73
                                                 D+ F +LHG FGEDG VQ +LE
Sbjct: 67  GTAEFPEGTQQVFLPMGAGDSRLTLVDAEGNVTRTAPVDVVFPLLHGPFGEDGTVQGLLE 126

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH---------LI 124
           + ++ Y   G+ ASA+ MDK   K    S G+ V P  +V     + +           +
Sbjct: 127 MADLHYVGCGVTASAVGMDKHFMKVAFESAGLEVGPYEVVTNRQWEHEDREQILERVLKL 186

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
             P  +KP + GSS GI  +   + +   +    +  H  +++IE  + G E+ C V+  
Sbjct: 187 GFPMFVKPTRAGSSFGITKVDSVEELVPAI--EEARRHDPKIIIEAGIVGREIECAVLDG 244

Query: 185 ASLDV--------TEIAVPKSDFYSYELKYSSLNS-THVLPAKIPLDIYKEVQRLAFLAH 235
              ++         E+      FY +E KY S +S   V PA +P D+   ++ LA  A 
Sbjct: 245 HHGEMPRASYPGEIEVVDQDHGFYDFEAKYVSESSAVTVCPANLPQDVQDRLRELAVKAF 304

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
            A+   G+SR+DF +     ++   E+N  PG TP+S++  M    G S+ +L+  ++  
Sbjct: 305 LALDGEGLSRADFFYTE-DGRLVINEVNTMPGFTPISMYKTMWENTGISYTDLISELLTL 363

Query: 296 A 296
           A
Sbjct: 364 A 364


>gi|295090181|emb|CBK76288.1| D-alanine--D-alanine ligase [Clostridium cf. saccharolyticum K10]
          Length = 387

 Score =  300 bits (769), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 92/344 (26%), Positives = 160/344 (46%), Gaps = 51/344 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           +AV+ GG S E  VSL S  A  S ++   +    I + +S    L              
Sbjct: 44  IAVIFGGCSPEYSVSLQSAYAVISHMDTEVYTPVLIGISQSGDWFLYEGDIEKIVSDTWC 103

Query: 47  ---------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPY 79
                                        L  D AF VLHG  GEDG +Q + E+  IP 
Sbjct: 104 GGKDCTPVVVSPNRTSHNLLLLENGKVKKLHIDAAFPVLHGRNGEDGTIQGLFEMAGIPV 163

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF-----TMDSQHLISPPYVIKPLK 134
              G+L+SAL MDK R+ ++V + G+ V  S ++ +       +     I  P  +KP+K
Sbjct: 164 VGCGVLSSALCMDKDRAHKLVHTAGIAVPSSFVLGKSASVATALQQAEKIGYPLFVKPVK 223

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194
            GSS GI  +     +P  L    ++ +  ++++E+ + G E+ C ++GD  L V E+  
Sbjct: 224 AGSSFGITKVSSSNELPAAL--ELAFEYDKRVIVEECISGFEVGCAILGDEDLTVGEVDE 281

Query: 195 PK--SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            +    F+++  KY+   S   +PA+IP +  +++++ A   ++ + C+G +R D    P
Sbjct: 282 IELSGGFFNFTEKYTLKTSAIHVPARIPQNTAEQIKQAAKTIYRTLDCQGFARVDLFLTP 341

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              ++ + E+N  PG T  S +P M   AG++F +++  ++E A
Sbjct: 342 S-GEIVFNEVNTIPGFTTHSRYPNMMKAAGFTFEQIVSALIEQA 384


>gi|228950414|ref|ZP_04112574.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228809229|gb|EEM55690.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
          Length = 304

 Score =  300 bits (769), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 84/303 (27%), Positives = 159/303 (52%), Gaps = 9/303 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGG+SSE++VS+ +G    + L+   +++  I ++  + L+      D A   LHG
Sbjct: 3   IGVIMGGVSSEKQVSIMTGNEMIANLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117
            +GEDG VQ  LE L IPY+ S +L+S + MDK  SK+++   G+     I + +     
Sbjct: 63  KYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNISKKILRYEGIETPDWIELTKMEDLN 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
           +D    +  P V+KP  GGSS+G+ ++     +    +  + +    +++IE+Y+ G E+
Sbjct: 123 LDELDKLGFPLVVKPNSGGSSVGVKIVYNKDELIS--MLETVFEWDSEVVIEKYIKGEEI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC +     L +  I    ++F+ Y  KY   ++   +  ++P ++ + V + +   ++A
Sbjct: 181 TCSIFDGKQLPIISIR-HAAEFFDYNAKYDDASTIEEV-IELPAELKERVNKASLACYKA 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           + C   +R D +        + +E+N  PGMT  S+ P+ A  AG  + +LL  ++E + 
Sbjct: 239 LKCSVYARVDMMV--KDGIPYVMEVNTLPGMTQASLLPKSADAAGIHYSKLLDMIIETSL 296

Query: 298 CLR 300
            +R
Sbjct: 297 RVR 299


>gi|126643341|ref|YP_001086325.1| D-alanine--D-alanine ligase [Acinetobacter baumannii ATCC 17978]
          Length = 286

 Score =  300 bits (769), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 92/284 (32%), Positives = 143/284 (50%), Gaps = 8/284 (2%)

Query: 15  SLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILEL 74
           SL SG+A   AL  +G +    D        L  +  D AF VLHG  GEDG +Q +LE 
Sbjct: 2   SLDSGQAVLDALLRSGVQAEAFDPQDRSVTEL--VNYDRAFIVLHGRGGEDGQIQGVLEW 59

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ--HLISPPYVIKP 132
           L IPYT +G+  SA+ MDK+++KQ+     +P  P  ++ + T        +  P +IKP
Sbjct: 60  LNIPYTGTGVQGSAIGMDKVKTKQIWQGSDLPTAPYRIITKETDLDSVIAELGLPVIIKP 119

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192
           +  GSS+G+  ++K +     + +++   H   ++ E+++ G E T   +    L V  +
Sbjct: 120 VHEGSSVGMSKVEKAEDFAAAIEKAT--QHDAVVMAEKWITGREFTISFLNGQPLPVIRL 177

Query: 193 AVP-KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
             P    FY YE KY   +  + +P  +     K++Q L   A QA+G  G  R D + D
Sbjct: 178 QPPADVAFYDYEAKYQRNDVEYGIPCGLSETEEKKLQALCLRAFQAVGAEGWGRIDAMQD 237

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
                 + LE+N  PGMT  S+ P+ A   GYSF EL + ++E 
Sbjct: 238 EQGN-FWLLEVNTVPGMTSHSLVPKAAKAVGYSFDELCVAILEQ 280


>gi|332363453|gb|EGJ41236.1| D-alanine-D-alanine ligase [Streptococcus sanguinis SK355]
          Length = 353

 Score =  300 bits (769), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 98/339 (28%), Positives = 161/339 (47%), Gaps = 44/339 (12%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQ--------------------------- 35
           +L GG S+EREVS+ S ++   A+    F V                             
Sbjct: 13  LLYGGRSAEREVSVLSAESVMRAVNYDRFSVKTYFITKDGDFIQTQEFEATPAADEKLMT 72

Query: 36  ---IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
              +D+ R +     +    + F VLHG  GEDG +Q  LE+L++PY    IL+S+L+MD
Sbjct: 73  NATVDMSRKIKPSDIYEDGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNILSSSLAMD 132

Query: 93  KMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           K+ +K+V+ S G+   P +       V +   + +  ++ P   KP   GSS+GI   + 
Sbjct: 133 KITTKRVLESAGISQVPYVALVDGEDVEQKIQEIEEKLTYPVFTKPSNMGSSVGISKSEN 192

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYEL 204
              +   L    ++ +  ++L+EQ V   E+  G++G+  +  T     V    FY YE 
Sbjct: 193 QAELRASLDL--AFKYDSRVLVEQGVTAREIEVGLLGNVDVKSTLPGEVVKDVAFYDYEA 250

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           KY     T  +PAKIP ++   +++ A  A +A+GC G+SR DF +     +VF  E+N 
Sbjct: 251 KYIDNKITMDIPAKIPEEVVSLMRQNAEAAFRALGCLGLSRCDFFY-AEDGQVFLNELNT 309

Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMV---EDASCLR 300
            PG T  S++P +    G ++ +L+  +V   E A   R
Sbjct: 310 MPGFTQWSMYPLLWENMGLAYPDLIEKLVGLAEKAFAKR 348


>gi|319951163|ref|ZP_08025008.1| D-alanyl-alanine synthetase A [Dietzia cinnamea P4]
 gi|319435179|gb|EFV90454.1| D-alanyl-alanine synthetase A [Dietzia cinnamea P4]
          Length = 368

 Score =  300 bits (769), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 94/366 (25%), Positives = 156/366 (42%), Gaps = 71/366 (19%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           +AVL GG SSE  VS  S  A    L+ + ++V  + +  +    L              
Sbjct: 6   VAVLYGGRSSEHSVSCVSAGAVMGHLDRSRYEVIPVGITEAGAWTLGSDDTADLRIADRI 65

Query: 47  ---------------------------------AHLKPDLAFNVLHGNFGEDGLVQAILE 73
                                               + D+ F V+HG   EDG +Q +LE
Sbjct: 66  MPVVDAGRPRVALGLSTDDRGVLRFADGDRAGQEIARVDVVFPVMHGTHAEDGTIQGLLE 125

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM----DSQHLISPPYV 129
           L  IPY   G+ ASA  MDK  +K V+ + G+P+   +++   T       +  +  P  
Sbjct: 126 LSGIPYVGPGVFASAAGMDKEFTKVVLGAAGLPIGRQVVLRPGTATLSPADRDRLGLPLF 185

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG------ 183
           +KP +GGSS+GI  + +   +   + ++  +   +++++E  + G E+ CGV+       
Sbjct: 186 VKPARGGSSIGITKVSRAADLDAAIAEARRF--DEKVIVEAAIVGREIECGVLEYPDGRV 243

Query: 184 DASLDV----------TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           +ASL             E       FY ++ KY    +T  LPA +P +  ++++ LA  
Sbjct: 244 EASLPAELHIPGEPTGVEGETEGDAFYDFDTKYLDDVTTFDLPADLPAEQTEQLRTLAVE 303

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           A  A+  RG+SR DF            E+N  PG TP+S++P+M A  G  +  LL  ++
Sbjct: 304 AFHALDARGLSRVDFFVTAEG--PVINEVNTMPGFTPISMYPQMWAATGVDYESLLDTLI 361

Query: 294 EDASCL 299
             A   
Sbjct: 362 RTAIAR 367


>gi|196043714|ref|ZP_03110952.1| D-alanine--D-alanine ligase [Bacillus cereus 03BB108]
 gi|225864595|ref|YP_002749973.1| D-alanine--D-alanine ligase [Bacillus cereus 03BB102]
 gi|229184840|ref|ZP_04312032.1| D-alanine--D-alanine ligase [Bacillus cereus BGSC 6E1]
 gi|196026023|gb|EDX64692.1| D-alanine--D-alanine ligase [Bacillus cereus 03BB108]
 gi|225787258|gb|ACO27475.1| D-alanine--D-alanine ligase [Bacillus cereus 03BB102]
 gi|228598645|gb|EEK56273.1| D-alanine--D-alanine ligase [Bacillus cereus BGSC 6E1]
          Length = 304

 Score =  300 bits (769), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 85/303 (28%), Positives = 155/303 (51%), Gaps = 9/303 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGG+SSE++VS+ +G    + L+   +++  I ++  + L+      D A   LHG
Sbjct: 3   IGVIMGGVSSEKQVSIMTGNEMIAHLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117
            +GEDG VQ  LE L IPY+ S +L+S + MDK  SK+++   G+     I + +     
Sbjct: 63  KYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNMSKKILRYEGIETPDWIELTKMEDLN 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            D    +  P V+KP  GGSS+G+ ++     +   L     W    +++IE+Y+ G E+
Sbjct: 123 FDELDKLGFPLVVKPNSGGSSVGVKIVYDKDELISTLETVFEW--DSEVVIEKYIKGDEI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC +     L +  I    ++F+ Y  KY    +   +  ++P ++ + V + +   ++A
Sbjct: 181 TCSIFDGKQLPIISIR-HAAEFFDYNAKYDDAGTIEEV-IELPAELKERVNKASLACYKA 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           + C   +R D +        + +E+N  PGMT  S+ P+ A   G  + +LL  ++E + 
Sbjct: 239 LKCSVYARVDMMV--KDGIPYVMEVNTLPGMTQASLLPKSAEAEGIDYSKLLDMIIETSL 296

Query: 298 CLR 300
            +R
Sbjct: 297 RVR 299


>gi|300811464|ref|ZP_07091958.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus
           delbrueckii subsp. bulgaricus PB2003/044-T3-4]
 gi|300497537|gb|EFK32565.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus
           delbrueckii subsp. bulgaricus PB2003/044-T3-4]
          Length = 362

 Score =  300 bits (769), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 89/343 (25%), Positives = 166/343 (48%), Gaps = 49/343 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD--------------------- 39
           + ++ GG SSE EVS++S      A++   F V  I +                      
Sbjct: 7   VGLIFGGNSSEYEVSITSAGNIYKAIDKDKFDVHPIWITNSGYVASEADSYKVLEEPGYM 66

Query: 40  ----------RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
                      ++  + +  + D+ F ++HGN GEDG++Q +  L++ P+    +LA+A+
Sbjct: 67  VEKNDKTANLSNLIELASRPELDVLFPIVHGNLGEDGVLQGLFRLIDKPFVGVDVLAAAV 126

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ--HLISPP----------YVIKPLKGGS 137
           +MDK  +K +    GVPV   + + R+  +      +S              +KP   GS
Sbjct: 127 TMDKEFTKILAQRAGVPVAKWVSIKRYEYEDAKNQKLSYDWVSGQLGTSNLFVKPSNQGS 186

Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAV 194
           S+GI  +  D +    L  + ++ + D++L+E+ + G E+   V+G+    V+    I  
Sbjct: 187 SVGITHVTDDSNYAEAL--AEAFKYDDKVLVEEGIVGTEVETAVLGNDHPVVSGVGRIIN 244

Query: 195 PKSDFYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
             + +YSYE KYS+ ++T +  PA+IP +  ++VQ  A   +Q   C G++R D +    
Sbjct: 245 ADNTWYSYENKYSTESTTTLQIPAQIPAETAEKVQENALKIYQVTECSGMARVDSMLRES 304

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             +V + E+N  PG T +S++P++   AG S+ +L+  ++  A
Sbjct: 305 DGEVIFNELNALPGFTNISMYPKLFEEAGISYPDLITRLIRLA 347


>gi|126661460|ref|ZP_01732516.1| D-alanylalanine synthetase [Cyanothece sp. CCY0110]
 gi|126617252|gb|EAZ88065.1| D-alanylalanine synthetase [Cyanothece sp. CCY0110]
          Length = 349

 Score =  300 bits (768), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 87/349 (24%), Positives = 159/349 (45%), Gaps = 61/349 (17%)

Query: 1   MAVLMGGISSEREVSLSS----------GKACASALEDAGFKVSQIDVDRSVGL------ 44
           + +L GG S E EVS++S          G+        + + +  + + ++         
Sbjct: 6   VGLLFGGRSGEHEVSINSAAAIAQALQIGEN------GSKYDILPVYIQKNGVWLAGDTA 59

Query: 45  ------------------VLAHLKP-----DLAFNVLHGNFGEDGLVQAILELLEIPYTH 81
                              L    P     ++   VLHG  GEDG +Q +L L+++P+  
Sbjct: 60  SKVLETKTPLSTEDTNPSQLWQFPPQVQEVEVWVPVLHGPNGEDGTIQGLLRLMQVPFVG 119

Query: 82  SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM------------DSQHLISPPYV 129
           SG+L SA+ MDK+  K   +  G+P      V R  +            + +  +  P  
Sbjct: 120 SGVLGSAVGMDKIAMKMAFAQAGLPQVKYRAVERSQVWSNPCIFPKLCDEIEADLGYPCF 179

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           +KP   GSS+GI  ++    +   L  ++S++   +++IE  V+  EL C V+G+ +   
Sbjct: 180 VKPANLGSSVGIAKVRSHSELETALDSAASYDR--RIVIEAGVNARELECAVLGNDNPKA 237

Query: 190 TEIAVP--KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           + +     + DFY YE KY+   S   +PA +P  I  ++Q +A  A + +   G++R D
Sbjct: 238 SVVGEVTFEGDFYDYETKYTEGRSQIHIPANLPDKIVTQIQEMAIQAFKTVDAAGLARVD 297

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           F +   + +++  EIN  PG T  S++P++    G +F +L+  +V+ A
Sbjct: 298 FFYVEETEEIYLNEINTLPGFTKFSMYPQLWKATGINFEQLVDQLVQFA 346


>gi|291527562|emb|CBK93148.1| D-alanine--D-alanine ligase [Eubacterium rectale M104/1]
          Length = 351

 Score =  300 bits (768), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 113/345 (32%), Positives = 171/345 (49%), Gaps = 55/345 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-----DRSVGLV---------- 45
           + VL GG+S+ER+VS  +G   A AL++ G KV  +DV     DR   L           
Sbjct: 3   IVVLAGGLSTERDVSFKTGSMVAKALKENGHKVILLDVFMGYSDREEDLTGIFDRADEIS 62

Query: 46  ------------LAHLKP---------------------DLAFNVLHGNFGEDGLVQAIL 72
                       LA +K                      D+ F  LHG  GE+G +QA  
Sbjct: 63  VQVSDIPTEAPDLAKVKASRKDQSPCFFGPNVIKMCQMADIVFMALHGENGENGKIQAAF 122

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---QHLISPPYV 129
           +L  + YT S  L+SA++M+K  SKQ   + G+P    I + R T      +  ++ P V
Sbjct: 123 DLFGVKYTGSDYLSSAIAMNKETSKQFFLANGIPTPKGISMTRATRQDDITKLDLTLPCV 182

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           +KP  GGSS+G+ ++K        L  +  W   ++L+IE++V G E + GV+   +L +
Sbjct: 183 VKPCCGGSSIGVTIVKDAAEFKAALDDAFKWE--NELVIEEFVQGREFSVGVIEGKALPI 240

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
            EIA PK  FY Y+ KY + ++    PA++P  + K++Q  A    + IG    SRSDFL
Sbjct: 241 IEIA-PKEGFYDYKNKYKAGSTVETCPAELPEQVTKDMQHYAEEVARVIGLDTYSRSDFL 299

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            +    ++F LE N  PGMTP S+ P+ AA  G SF +L   +++
Sbjct: 300 LNDK-NEMFCLEANTLPGMTPTSLLPQEAAVIGMSFNQLCEHLID 343


>gi|40713144|emb|CAE53344.1| VanA protein [Actinoplanes teichomyceticus]
          Length = 345

 Score =  300 bits (768), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 92/338 (27%), Positives = 149/338 (44%), Gaps = 45/338 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           + ++ GG+S E  VS+ S +  A +L+   ++   I + +     L              
Sbjct: 6   IGIIFGGVSEEHPVSIKSAQEVAKSLDAEKYEPYWIGITKDGAWRLCDGPGADWEISSAR 65

Query: 47  ---------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
                                  ++ D+   VLHG  GEDG +Q + EL  IPY    + 
Sbjct: 66  PAMLSPDRNVHGLLVQEDGRYREIRLDVVLPVLHGKLGEDGAMQGLFELSGIPYVGCDVQ 125

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145
           +SA+ MDK  +  VVSS G+      +V          ++ P  +KP + GSS G+  + 
Sbjct: 126 SSAVCMDKSLTYAVVSSAGIATPRFWVVTPDEAPDPAQLTYPVFVKPARSGSSFGVTKVS 185

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYS 201
            +Q +   L  +  +    ++LIE+ V G E+ C +MG+     + +V  +A+    F  
Sbjct: 186 TEQELKAALETAREF--DSKVLIEEAVVGSEIGCAIMGNDPDLVAGEVDRVALSHGFFRI 243

Query: 202 Y---ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
           +   E +  S NST + PA IP +    VQ  A   ++A+GCRGI+R D         V 
Sbjct: 244 HQESEPERGSENSTFICPADIPAEARSLVQETAKAIYRALGCRGIARVDMFL-KEDGTVV 302

Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             E+N  PG+T  S +P M A AG     ++  +V  A
Sbjct: 303 LNEVNTLPGLTSYSRYPRMMAAAGIPLSAVIDQIVSLA 340


>gi|311740529|ref|ZP_07714356.1| D-alanine-D-alanine ligase [Corynebacterium pseudogenitalium ATCC
           33035]
 gi|311304049|gb|EFQ80125.1| D-alanine-D-alanine ligase [Corynebacterium pseudogenitalium ATCC
           33035]
          Length = 353

 Score =  300 bits (768), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 95/351 (27%), Positives = 163/351 (46%), Gaps = 56/351 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           +AV+ GG S+E  VS  S  A  + L+   F+V  I + R                    
Sbjct: 7   VAVIYGGRSTEHSVSCVSAGAIMNHLDPEKFEVVPIGITREGTWTPGTTEGLEIVDGVMP 66

Query: 49  -----------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPY 79
                                         + D+ F +LHG FGEDG VQ + EL  +PY
Sbjct: 67  EVSPGAELTLSLDPNAKGQFHNVTDGTLFAEVDVVFPILHGPFGEDGTVQGLFELSGLPY 126

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFTMDSQHLISPPYVIKPLKGG 136
              G+LAS++ MDK  +K+V+++  +PV P +++      + D +  +  P  +KP +GG
Sbjct: 127 VGPGVLASSVGMDKEFTKKVLAAADLPVAPEVILKGRTELSEDEKQQLGLPVFVKPARGG 186

Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM--GDASLDVTEIAV 194
           SS+G+  +   +  P  +  +      +++L+E  + G E+  GV+   D +L  +  A+
Sbjct: 187 SSIGVSKVTTWEEFPAAVDLAL--EDDEKILVEPEIVGKEVEIGVLHYADGTLLASVPAL 244

Query: 195 ------PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                     FY ++ KY     T  +PA    ++ ++++ +A  A +A+ C G+SR DF
Sbjct: 245 LAGIDDSDEGFYGFDTKYLDNVVTAEIPAPFAPELTEKLRDMAIRAFEALNCEGLSRVDF 304

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
                S  V+  EIN  PG TP+S++P++ A +G  +  LL  ++E A   
Sbjct: 305 FVTKDS--VYINEINTLPGFTPISMYPQVLAASGVEYPALLEALIEQALAK 353


>gi|27904697|ref|NP_777823.1| D-alanine--D-alanine ligase [Buchnera aphidicola str. Bp (Baizongia
           pistaciae)]
 gi|29427409|sp|P59435|DDL_BUCBP RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|27904094|gb|AAO26928.1| D-alanine-D-alanine ligase [Buchnera aphidicola str. Bp (Baizongia
           pistaciae)]
          Length = 309

 Score =  300 bits (768), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 98/306 (32%), Positives = 161/306 (52%), Gaps = 13/306 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S ER +SL SG    ++L  +G     ID        L H K   AF  LHG
Sbjct: 8   IAVLLGGTSQERNISLISGYNILNSLLKSGIHAVAIDTKDFPITQLPHQKFTKAFIALHG 67

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q++L+ L IP+T S  L SA+S++K ++K +  S  +PV P + +N+   + 
Sbjct: 68  RDGEDGTIQSVLKYLNIPFTGSKTLPSAISINKFKTKLLWQSFNLPVVPYLHINKHEFNK 127

Query: 121 Q---------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
           +          L+  P ++KP + GSS+GI ++   +++      +  +   + +LIE++
Sbjct: 128 KFLQKFKKNISLLGLPIIVKPNQEGSSIGITIVYSYETLYKACKTAFIF--DNSILIEKF 185

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G   L +  I  P++ FY+Y  KY S  +T+  P+ +      E++++ 
Sbjct: 186 IYGEEYTISILGKKILPIIRI-CPENTFYNYNSKYLSNRTTYFCPSGLNKLKELELKKIT 244

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A   I   G  R D + D    K + LE N  PGMT  S+FP  A  AG S++ L+  
Sbjct: 245 LTAWNIIDGTGWGRVDVIMDYK-NKFWLLEANTCPGMTDHSLFPMSAKKAGISYQILVQK 303

Query: 292 MVEDAS 297
           ++E A+
Sbjct: 304 ILELAN 309


>gi|301054153|ref|YP_003792364.1| D-alanylalanine synthetase [Bacillus anthracis CI]
 gi|300376322|gb|ADK05226.1| D-alanylalanine synthetase [Bacillus cereus biovar anthracis str.
           CI]
          Length = 311

 Score =  300 bits (768), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 83/303 (27%), Positives = 157/303 (51%), Gaps = 9/303 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGG+SSE++VS+ +G    + L+   +++  I ++  + L+      D A   LHG
Sbjct: 10  IGVIMGGVSSEKQVSIMTGNEMIAHLDKNKYEIVPIKLNEKMDLIEKAKDIDFALLALHG 69

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117
            +GEDG VQ  LE L IPY+ S +L+S + MDK  SK+++   G+     I + +     
Sbjct: 70  KYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNISKKILRYEGIETPDWIELTKMEDLN 129

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
           +D    +  P V+KP  GGSS+G+ ++     +    +  + +    +++IE+Y+ G E+
Sbjct: 130 LDELDKLGFPLVVKPNSGGSSVGVKIVYDKDELIS--MLETVFEWDSEVVIEKYIKGDEI 187

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC +     L +  I    ++F+ Y  KY    +   +  ++P ++ + V + +   ++A
Sbjct: 188 TCSIFDGKQLPIISIR-HAAEFFDYNAKYDDAGTIEEV-IELPTELKERVNKASLACYKA 245

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           + C   +R D +        + +E+N  PGMT  S+ P+ A   G  + +LL  ++E + 
Sbjct: 246 LKCSVYARVDMMV--KDGIPYVMEVNTLPGMTQASLLPKSAEAEGIDYSKLLDMIIETSL 303

Query: 298 CLR 300
            +R
Sbjct: 304 RVR 306


>gi|324326581|gb|ADY21841.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 311

 Score =  300 bits (768), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 86/303 (28%), Positives = 157/303 (51%), Gaps = 9/303 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGG+SSE++VS+ +G    + L+   +++  I ++  + L+      D A   LHG
Sbjct: 10  VGVIMGGVSSEKQVSIMTGNEMIANLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 69

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117
            +GEDG VQ  LE L IPY+ S +L+S + MDK  SK+++   G+     I + +     
Sbjct: 70  KYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNISKKILRYEGIETPDWIELTKMEDLN 129

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
           +D    +  P V+KP  GGSS+G+ ++     +    +  + +    +++IE+Y+ G E+
Sbjct: 130 VDELDKLGFPLVVKPNSGGSSVGVKIVYDKDELIS--MLETVFEWDSEVVIEKYIKGDEI 187

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC +     L +  I    ++F+ Y  KY    ST     ++P ++ + V + +   ++A
Sbjct: 188 TCSIFDGKQLPIISIR-HAAEFFDYNAKYD-DTSTIEEVIELPAELKERVNKASLACYKA 245

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           + C   +R D +        + +EIN  PGMT  S+ P+ A   G  + +LL  ++E + 
Sbjct: 246 LKCSVYARVDMMV--KDGIPYVMEINTLPGMTQASLLPKSAEAEGIDYSKLLDMIIETSL 303

Query: 298 CLR 300
            +R
Sbjct: 304 RVR 306


>gi|189183856|ref|YP_001937641.1| D-alanine--D-alanine ligase [Orientia tsutsugamushi str. Ikeda]
 gi|189180627|dbj|BAG40407.1| D-alanine-D-alanine ligase [Orientia tsutsugamushi str. Ikeda]
          Length = 324

 Score =  300 bits (768), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 102/301 (33%), Positives = 171/301 (56%), Gaps = 5/301 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL-KPDLAFNVLH 59
           + +L GG+S+EREVSL S     +AL   G++V++IDV + + + L+ + +P   FN L 
Sbjct: 27  VVILYGGMSAEREVSLMSNDNVQAALISNGYQVTRIDVGQDIAVKLSEITRPYTVFNCLV 86

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G +GEDG +  +L ++ IPYTHSG+  SA + DK  +K ++    +    SI +N     
Sbjct: 87  GTYGEDGCIPGLLNIMNIPYTHSGVKTSAAAFDKQIAKTILQCYKIKTPASITINSNDNV 146

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
               I  PYVIKPL+ GSS+G+ ++  +      L +   +  G+++L+EQY+ G EL  
Sbjct: 147 IDDPILRPYVIKPLQQGSSIGVKIVHLEDKF---LFKDYKFQFGNKVLVEQYIKGRELQV 203

Query: 180 GVMGDASLDVTEIAVPKSD-FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
            ++    + + EI + K   FY Y+ KYS   + H++P  +P++   +V  +A   ++  
Sbjct: 204 ALLDGQVVGILEIKMLKDKIFYDYQSKYSPGFAEHIIPPMLPVNTVNQVINIAEKVYKIF 263

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
            CRG  R + +   +  +V+ +E+N  PGMT +S +PE+A Y G SF EL+  ++  A C
Sbjct: 264 DCRGPCRLECILSDIDNEVYVIELNTHPGMTSLSSYPEIAQYYGISFNELVERILITAKC 323

Query: 299 L 299
            
Sbjct: 324 D 324


>gi|327489500|gb|EGF21293.1| D-alanine-D-alanine ligase [Streptococcus sanguinis SK1058]
          Length = 353

 Score =  300 bits (768), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 97/339 (28%), Positives = 160/339 (47%), Gaps = 44/339 (12%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQ--------------------------- 35
           +L GG S+EREVS+ S ++   A+    F V                             
Sbjct: 13  LLYGGRSAEREVSVLSAESVMRAVNYDRFSVKTYFITKDGDFIQTQEFEAKPAADEKLMT 72

Query: 36  ---IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
              +D+ R +     +    + F VLHG  GEDG +Q  LE+L++PY    IL+S+L+MD
Sbjct: 73  NATVDMSRKIKPSDIYEDGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNILSSSLAMD 132

Query: 93  KMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           K+ +K+V+ S G+   P + +           + +  ++ P   KP   GSS+GI   + 
Sbjct: 133 KITTKRVLESAGIAQVPYVALVDGEDLEQKIQEIEEKLTYPVFTKPSNMGSSVGISKSEN 192

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYEL 204
              +   L    ++ +  ++L+EQ V   E+  G++G+  +  T     V    FY YE 
Sbjct: 193 QAELRASLDL--AFKYDSRVLVEQGVTAREIEVGLLGNVDVKSTLPGEVVKDVAFYDYEA 250

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           KY     T  +PAKIP ++   +++ A  A +A+G  G+SR DF +     +VF  E+N 
Sbjct: 251 KYIDNKITMDIPAKIPEEVVSLMRQNAEAAFRALGGLGLSRCDFFY-AEDGQVFLNELNT 309

Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMV---EDASCLR 300
            PG T  S++P +    G S+ +L+  +V   E+A   R
Sbjct: 310 MPGFTQWSMYPLLWENMGLSYPDLIEKLVGLAEEAFAKR 348


>gi|294792039|ref|ZP_06757187.1| D-alanine--D-alanine ligase [Veillonella sp. 6_1_27]
 gi|294457269|gb|EFG25631.1| D-alanine--D-alanine ligase [Veillonella sp. 6_1_27]
          Length = 310

 Score =  300 bits (768), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 101/305 (33%), Positives = 162/305 (53%), Gaps = 12/305 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59
           + VLMGG S E EVS  +G A A ALE  G+    ++++ R+V   +  L  ++ FN +H
Sbjct: 6   IIVLMGGPSKEAEVSRRTGAAIAEALESKGYNAQTLELNPRTVLKDIESLDGEIVFNAIH 65

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G +GEDG +Q +LE+ EIPYT SGI+A A+ M+K  SK V     +P   S   N     
Sbjct: 66  GRYGEDGALQGLLEMAEIPYTGSGIMAHAVGMNKKVSKDVFKGANIPTATSESFNGNLES 125

Query: 120 SQHLIS-------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
           ++ +I         P V+K    GSS+G+ +++ +  +   +  + +  +   L++EQ++
Sbjct: 126 AEAIIGHIRKQFTIPVVVKSATQGSSIGVTIVRDEAQLEAAV--TEALKYDPILVVEQFL 183

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
           DG E T  V+   +L V EI  P S  Y Y  KY+   + +++PA I  ++  E+QR+  
Sbjct: 184 DGREFTVSVLDGKALSVIEIR-PHSGEYDYTSKYTVGATEYLVPAPISEEMTAEMQRIGE 242

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           L ++ +   G+ R D + D     ++ LE N  PGMT  S+ P+ A   G  F  L   +
Sbjct: 243 LVYREVQGSGVIRVDIMTDHADN-MYVLEYNTVPGMTATSLVPKAAKEMGIDFPTLCEKI 301

Query: 293 VEDAS 297
           +  AS
Sbjct: 302 LLTAS 306


>gi|315223279|ref|ZP_07865140.1| D-ala D-ala ligase [Streptococcus anginosus F0211]
 gi|315187711|gb|EFU21465.1| D-ala D-ala ligase [Streptococcus anginosus F0211]
          Length = 348

 Score =  300 bits (768), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 93/334 (27%), Positives = 158/334 (47%), Gaps = 41/334 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------------------- 40
           + +L GG S+ER+VS+ S ++   A++   F V    + +                    
Sbjct: 6   IILLYGGRSAERKVSVLSAESVMRAIDYDKFFVKTYFITQAGDFIKTQEFSSKPTDDEKL 65

Query: 41  ---SVGLVLAHLKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
                 +    +KP        + F VLHG  GEDG +Q  LE+L++PY    IL+S+++
Sbjct: 66  MTNDTVVASQKIKPSDIYEEGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNILSSSVA 125

Query: 91  MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIKPLKGGSSLGIIVI 144
           MDK+ +K+V++S G+P  P + V       + +      ++ P   KP   GSS+GI   
Sbjct: 126 MDKITTKRVLASAGIPQVPYVAVIEGENIDEKIAAVEANLTYPVFTKPSNMGSSVGISKS 185

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--DVTEIAVPKSDFYSY 202
           +    +   L    ++ +  ++LIEQ V+  E+  G++G+      +    V    FY Y
Sbjct: 186 ENQDELRSALKL--AFKYDSRVLIEQGVNAREIEVGLLGNEEAQSSLPGEVVKDVAFYDY 243

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
           E KY     T  +PAK+  D+   +++ A  A  AIG  G+SR DF +     ++   E+
Sbjct: 244 EAKYIDNKITMDIPAKLSEDVIATMRQYAEKAFHAIGGVGLSRCDFFYTDK-GEILLNEL 302

Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           N  PG T  S++P +    G S+ +L+  +V  A
Sbjct: 303 NTMPGFTQWSMYPLLWENMGISYTDLIEKLVLLA 336


>gi|218768808|ref|YP_002343320.1| D-alanine--D-alanine ligase [Neisseria meningitidis Z2491]
 gi|22095566|sp|Q9JSZ9|DDL_NEIMA RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|121052816|emb|CAM09163.1| D-alanine--D-alanine ligase B [Neisseria meningitidis Z2491]
 gi|319411047|emb|CBY91447.1| D-alanine-D-alanine ligase (D-alanylalanine synthetase; D-Ala-D-Ala
           ligase) [Neisseria meningitidis WUE 2594]
          Length = 304

 Score =  300 bits (768), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 105/299 (35%), Positives = 157/299 (52%), Gaps = 7/299 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSERE+SL SG A  +AL+  G      D   +    L       AFN+LHG
Sbjct: 7   VAVLMGGFSSEREISLDSGTAILNALKSKGIDAYAFDPKETPLSELKAQGFQTAFNILHG 66

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--M 118
            +GEDG VQ  LELL IPYT SG+ ASA+ MDK R K +  + G+PV    +++  T   
Sbjct: 67  TYGEDGAVQGALELLGIPYTGSGVAASAIGMDKYRCKLIWQALGLPVPEFAVLHDDTDFD 126

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
             +  +  P  +KP   GSS+G++ +K    +     +   +    +++ E+++ G E +
Sbjct: 127 AVEEKLGLPMFVKPAAEGSSVGVVKVKGKGRLKSVYEELKHFQ--GEIIAERFIGGGEYS 184

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQA 237
           C V+    L    I +P ++FY YE KY+  ++ +  P   +       ++ LA    QA
Sbjct: 185 CPVLNGKGLPGIHI-IPATEFYDYEAKYNRNDTIYQCPSEDLTEAEESLMRELAVRGAQA 243

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           IG  G  R DF       K++ LEIN  PGMT  S+ P+ AA  G  F +L + +++ A
Sbjct: 244 IGAEGCVRVDF-LKDTDGKLYLLEINTLPGMTGHSLVPKSAAVMGVGFADLCIEILKTA 301


>gi|291524420|emb|CBK90007.1| D-alanine--D-alanine ligase [Eubacterium rectale DSM 17629]
          Length = 351

 Score =  300 bits (768), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 112/345 (32%), Positives = 171/345 (49%), Gaps = 55/345 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-----DRSVGLV---------- 45
           + VL GG+S+ER+VS  +G   A AL++ G KV  +DV     DR   L           
Sbjct: 3   IVVLAGGLSTERDVSFKTGSMVAKALKENGHKVILLDVFMGYSDREEDLTGIFDRADEIS 62

Query: 46  ------------LAHLKP---------------------DLAFNVLHGNFGEDGLVQAIL 72
                       LA +K                      D+ F  LHG  GE+G +QA  
Sbjct: 63  VQVSDIPTEAPDLAKVKASRKDQSPCFFGPNVIKMCQMADIVFMALHGENGENGKIQAAF 122

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---QHLISPPYV 129
           +L  + YT S  L+SA++M+K  SKQ   + G+P    I + R T      +  ++ P V
Sbjct: 123 DLFGVKYTGSDYLSSAIAMNKETSKQFFLANGIPTPKGISMTRATRQDDITKLDLTLPCV 182

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           +KP  GGSS+G+ +++        L  +  W   ++L+IE++V G E + GV+   +L +
Sbjct: 183 VKPCCGGSSIGVTIVRDAAEFKAALDDAFKWE--NELVIEEFVQGREFSVGVIEGKALPI 240

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
            EIA PK  FY Y+ KY + ++    PA++P  + K++Q  A    + IG    SRSDFL
Sbjct: 241 IEIA-PKEGFYDYKNKYKAGSTVETCPAELPEQVTKDMQHYAEEVARVIGLDTYSRSDFL 299

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            +    ++F LE N  PGMTP S+ P+ AA  G SF +L   +++
Sbjct: 300 LNDK-NEMFCLEANTLPGMTPTSLLPQEAAVIGMSFNQLCEHLID 343


>gi|196032003|ref|ZP_03099417.1| D-alanine--D-alanine ligase [Bacillus cereus W]
 gi|218903743|ref|YP_002451577.1| D-alanine--D-alanine ligase [Bacillus cereus AH820]
 gi|229122147|ref|ZP_04251362.1| D-alanine--D-alanine ligase [Bacillus cereus 95/8201]
 gi|195994754|gb|EDX58708.1| D-alanine--D-alanine ligase [Bacillus cereus W]
 gi|218538757|gb|ACK91155.1| D-alanine--D-alanine ligase [Bacillus cereus AH820]
 gi|228661273|gb|EEL16898.1| D-alanine--D-alanine ligase [Bacillus cereus 95/8201]
          Length = 304

 Score =  300 bits (768), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 84/303 (27%), Positives = 158/303 (52%), Gaps = 9/303 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGG+SSE++VS+ +G    + L+   +++  I ++  + L+      D A   LHG
Sbjct: 3   IGVIMGGVSSEKQVSIMTGNEMIANLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117
            +GEDG VQ  LE L IPY+ S +L+S + MDK  SK+++   G+     I + +     
Sbjct: 63  KYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNISKKILRYEGIETPDWIELTKMEDLN 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            D    +  P V+KP  GGSS+G+ ++     +    +  + +    +++IE+Y+ G E+
Sbjct: 123 FDELDKLGFPLVVKPNSGGSSVGVKIVYNKDELIS--MLETVFEWDSEVVIEKYIKGEEI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC +     L +  I    ++F+ Y  KY   ++   +  ++P ++ + V + +   ++A
Sbjct: 181 TCSIFDGKQLPIISIR-HAAEFFDYNAKYDDASTIEEV-IELPAELKERVNKASLACYKA 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           + C   +R D +        + +E+N  PGMT  S+ P+ A  AG  + +LL  ++E + 
Sbjct: 239 LKCSVYARVDMMV--KDGIPYVMEVNTLPGMTQASLLPKSADAAGIHYSKLLDMIIETSL 296

Query: 298 CLR 300
            +R
Sbjct: 297 RVR 299


>gi|104773391|ref|YP_618371.1| D-alanyl-alanine synthetase A [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
 gi|123077164|sp|Q1G7Q5|DDL_LACDA RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|103422472|emb|CAI97025.1| D-alanine--D-alanine ligase [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
          Length = 362

 Score =  300 bits (768), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 89/343 (25%), Positives = 167/343 (48%), Gaps = 49/343 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD--------------------- 39
           + ++ GG SSE EVS++S      A++   F V  I +                      
Sbjct: 7   VGLIFGGNSSEYEVSITSAGNIYKAIDKDKFDVHPIWITNSGYVASEADSYKVLEEPGYM 66

Query: 40  ----------RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
                      ++  + +  + D+ F ++HGN GEDG++Q +  L++ P+    +LA+A+
Sbjct: 67  VEKNDKTANLSNLIELASRPELDVLFPIVHGNLGEDGVLQGLFRLIDKPFVGVDVLAAAV 126

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ--HLISPP----------YVIKPLKGGS 137
           +MDK  +K +    GVPV   + + R+  +      +S              +KP   GS
Sbjct: 127 TMDKEFTKILAQRAGVPVAKWVSIKRYEYEDAKNQKLSYDWVSGQLGTSNLFVKPSNQGS 186

Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAV 194
           S+GI  +  D +    L  + ++ + D++L+E+ + G E+   V+G+    V+   +I  
Sbjct: 187 SVGITHVTDDSNYAEAL--AEAFKYDDKVLVEEGIVGTEVETAVLGNDHPVVSGVGQIIN 244

Query: 195 PKSDFYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
             + +YSYE KYS+ ++T +  PA+IP +  ++VQ  A   +Q   C G++R D +    
Sbjct: 245 ADNTWYSYENKYSTESTTTLQIPAQIPAETAEKVQENALKIYQITECSGMARVDSMLRES 304

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             +V + E+N  PG T +S++P++   AG S+ +L+  ++  A
Sbjct: 305 DGEVIFNELNALPGFTNISMYPKLFEEAGISYPDLITRLIRLA 347


>gi|325124996|gb|ADY84326.1| D-alanine-d-alanine ligase [Lactobacillus delbrueckii subsp.
           bulgaricus 2038]
          Length = 362

 Score =  300 bits (768), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 89/343 (25%), Positives = 167/343 (48%), Gaps = 49/343 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD--------------------- 39
           + ++ GG SSE EVS++S      A++   F V  I +                      
Sbjct: 7   VGLIFGGNSSEYEVSITSAGNIYKAIDKDKFDVHPIWITNSGYVASEADSYKVLEEPGYM 66

Query: 40  ----------RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
                      ++  + +  + D+ F ++HGN GEDG++Q +  L++ P+    +LA+A+
Sbjct: 67  VEKNDKTANLSNLIELASRPELDVLFPIVHGNLGEDGVLQGLFRLIDKPFVGVDVLAAAV 126

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ--HLISPP----------YVIKPLKGGS 137
           +MDK  +K +    GVPV   + + R+  +      +S              +KP   GS
Sbjct: 127 TMDKEFTKILAQRAGVPVAKWVSIKRYEYEDAKNQKLSYDWVSGQLGTSNLFVKPSNQGS 186

Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAV 194
           S+GI  +  D +    L  + ++ + D++L+E+ + G E+   V+G+    V+   +I  
Sbjct: 187 SVGITHVTDDSNYAEAL--AEAFKYDDKVLVEEGIVGTEVETAVLGNDHPVVSGVGQIIN 244

Query: 195 PKSDFYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
             + +YSYE KYS+ ++T +  PA+IP +  ++VQ  A   +Q   C G++R D +    
Sbjct: 245 ADNTWYSYENKYSTESTTTLQIPAQIPAETAEKVQENALKIYQITECSGMARVDSMLRES 304

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             +V + E+N  PG T +S++P++   AG S+ +L+  ++  A
Sbjct: 305 DGEVIFNELNALPGFTNISMYPKLFEEAGISYPDLITRLIRLA 347


>gi|116513372|ref|YP_812278.1| D-alanyl-alanine synthetase A [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
 gi|122275858|sp|Q04CI2|DDL_LACDB RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|116092687|gb|ABJ57840.1| D-alanine--D-alanine ligase [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
          Length = 362

 Score =  299 bits (767), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 89/343 (25%), Positives = 167/343 (48%), Gaps = 49/343 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD--------------------- 39
           + ++ GG SSE EVS++S      A++   F V  I +                      
Sbjct: 7   VGLIFGGNSSEYEVSITSAGNIYKAIDKDKFDVHPIWITNSGYVASEADSYKVLEEPGYM 66

Query: 40  ----------RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
                      ++  + +  + D+ F ++HGN GEDG++Q +  L++ P+    +LA+A+
Sbjct: 67  VEKNDKTANLSNLIELASRPELDVLFPIVHGNLGEDGVLQGLFRLIDKPFVGVDVLAAAV 126

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ--HLISPP----------YVIKPLKGGS 137
           +MDK  +K +    GVPV   + + R+  +      +S              +KP   GS
Sbjct: 127 TMDKEFTKILAQRAGVPVAKWVSIKRYEYEDAKNQKLSYDWVSGQLGTSNLFVKPSNQGS 186

Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAV 194
           S+GI  +  D +    L  + ++ + D++L+E+ + G E+   V+G+    V+   +I  
Sbjct: 187 SVGITHVTDDSNYAEAL--AEAFKYDDKVLVEEGIVGTEVETAVLGNDHPVVSGVGQIIN 244

Query: 195 PKSDFYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
             + +YSYE KYS+ ++T +  PA+IP +  ++VQ  A   +Q   C G++R D +    
Sbjct: 245 ADNTWYSYENKYSTESTTTLQIPAQIPAETAEKVQENALKIYQITECSGMARVDSMLRES 304

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             +V + E+N  PG T +S++P++   AG S+ +L+  ++  A
Sbjct: 305 DGEVIFNELNALPGFTNISMYPKLFEEAGISYPDLITRLIRLA 347


>gi|196040387|ref|ZP_03107688.1| D-alanine--D-alanine ligase [Bacillus cereus NVH0597-99]
 gi|196028872|gb|EDX67478.1| D-alanine--D-alanine ligase [Bacillus cereus NVH0597-99]
          Length = 304

 Score =  299 bits (767), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 84/303 (27%), Positives = 158/303 (52%), Gaps = 9/303 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGG+SSE++VS+ +G    + L+   +++  I ++  + L+      D A   LHG
Sbjct: 3   VGVIMGGVSSEKQVSIMTGNEMIAHLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117
            +GEDG VQ  LE L IPY+ S +L+S + MDK  SK+++   G+     I + +     
Sbjct: 63  KYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNISKKILRYEGIETPDWIELTKMEDLN 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
           +D    +  P V+KP  GGSS+G+ ++     +    +  + +    +++IE+Y+ G E+
Sbjct: 123 LDELDKLGFPLVVKPNSGGSSVGVKIVYDKDELIS--MLETVFEWDSEVVIERYIKGDEI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC +     L +  I    ++F+ Y  KY    +   +  ++P ++ + V + +   ++A
Sbjct: 181 TCSIFDGKQLPIISIR-HAAEFFDYNAKYDDAGTIEEV-IELPAELKERVNKASLACYKA 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           + C   +R D +        + +E+N  PGMT  S+ P+ A  AG  + +LL  ++E + 
Sbjct: 239 LKCSVYARVDMMV--KDGIPYVMEVNTLPGMTQASLLPKSAEAAGIHYSKLLDMIIETSL 296

Query: 298 CLR 300
            +R
Sbjct: 297 RVR 299


>gi|229161508|ref|ZP_04289489.1| D-alanine--D-alanine ligase [Bacillus cereus R309803]
 gi|228622045|gb|EEK78890.1| D-alanine--D-alanine ligase [Bacillus cereus R309803]
          Length = 304

 Score =  299 bits (767), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 87/303 (28%), Positives = 160/303 (52%), Gaps = 9/303 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGG+SSE++VS+ +G    + L+ + +++  I ++  + L+      D A   LHG
Sbjct: 3   IGVIMGGVSSEKQVSIMTGNEMIAHLDKSKYEIVPIMLNEKMDLIEKAKDIDFALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117
            +GEDG VQ  LE L IPY+ S +L+S + MDK  SK+++   GV     I + +     
Sbjct: 63  KYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNLSKKILRYEGVETPDWIELTKMEDLN 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
           ++    +  P V+KP  GGSS+G+ ++     +    +  + +    +++IE+Y+ G E+
Sbjct: 123 LEELEKLGFPLVVKPNSGGSSVGVKIVYNKNELIS--MLETVFEWDSEVVIEKYIKGEEI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC +     L +  I    ++F+ Y  KY    ST     ++P +I + V + +   ++A
Sbjct: 181 TCSIFDGKQLPIISIR-HAAEFFDYNAKYD-DTSTIEEVIELPGEIKERVNKASLACYKA 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           + C   +R D +        + +E+N  PGMT  S+ P+ A  AG ++ +LL  ++E + 
Sbjct: 239 LKCSVYARVDMMV--KDGIPYVMEVNTLPGMTQSSLLPKSADAAGINYSKLLDMIIETSL 296

Query: 298 CLR 300
            +R
Sbjct: 297 RVR 299


>gi|222159801|gb|ACM47278.1| D-Ala:D-Ala ligase Ddl [Enterococcus avium]
          Length = 359

 Score =  299 bits (767), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 86/342 (25%), Positives = 156/342 (45%), Gaps = 51/342 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLA------------- 47
           + +L GG S E +V++ S  +  SA+    ++V  I +D++   V               
Sbjct: 8   IILLYGGKSPEHDVAILSAFSVISAVYFDYYQVQLIYIDKTGQWVKGPLLTEAPETDETL 67

Query: 48  ----------------------HLKPD--LAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                  +K D  + F VLHG  GEDG +Q  LE L++PY  +G
Sbjct: 68  RLTWDPTGNEVEGFSGKVIAPGDIKEDNAIVFPVLHGPNGEDGTIQGFLETLDMPYVGAG 127

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLK 134
           ++ SA +MDK+ +K ++ + G+P  P + V +              +  +  P  +KP  
Sbjct: 128 VMTSACAMDKIMTKYILQAAGIPQVPYVPVLKNQWKENPKQIFDKCEGTLLYPMFVKPAN 187

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI-- 192
            GSS+GI   +  + +   L +  ++ +  + L+EQ +D  E+   V+G+  +  T    
Sbjct: 188 MGSSVGISRAENREELQNALQE--AYRYDSRALVEQGIDAREIEVAVLGNDDVRTTLPGE 245

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            V +  FY Y  KY +      +PA +P D+ ++ +  A  A+  +G  G+SR DF    
Sbjct: 246 VVKEEAFYDYNAKYINNTIQMAIPADVPEDVMQKARDFAKSAYTMLGGSGLSRCDFFLTN 305

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
              ++F  E+N  PG T  S++P +    G  + +L+  +++
Sbjct: 306 K-NELFLNELNTMPGFTEFSMYPLLWENMGLKYSDLIEELIQ 346


>gi|49479200|ref|YP_036716.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|49330756|gb|AAT61402.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar
           konkukian str. 97-27]
          Length = 304

 Score =  299 bits (767), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 86/303 (28%), Positives = 157/303 (51%), Gaps = 9/303 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGG+SSE++VS+ +G    + L+   +++  I ++  + L+      D A   LHG
Sbjct: 3   IGVIMGGVSSEKQVSIMTGNEMIAHLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117
            +GEDG VQ  LE L IPY+ S +L+S + MDK  SK+++   G+     I + +     
Sbjct: 63  KYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNMSKKILRYEGIETPDWIELTKMEDLN 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            D    +  P V+KP  GGSS+G+ ++     +    +  + +    +++IE+Y+ G E+
Sbjct: 123 FDELDKLGFPLVVKPNSGGSSVGVKIVYDKDELIS--MLETVFEWDSEVVIEKYIKGDEI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC +     L +  I    ++F+ Y  KY    ST     ++P ++ + V + +   ++A
Sbjct: 181 TCSIFDGKQLPIISIR-HAAEFFDYNAKYD-DTSTIEEVIELPAELKERVNKASLACYKA 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           + C   +R D +        + +E+N  PGMT  S+ P+ A  AG  + +LL  ++E + 
Sbjct: 239 LKCSVYARVDMMV--KDGIPYVMEVNTLPGMTQASLLPKSADAAGIHYSKLLDMIIETSL 296

Query: 298 CLR 300
            +R
Sbjct: 297 RVR 299


>gi|47568737|ref|ZP_00239433.1| D-ala D-ala ligase [Bacillus cereus G9241]
 gi|228988793|ref|ZP_04148866.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|47554631|gb|EAL12986.1| D-ala D-ala ligase [Bacillus cereus G9241]
 gi|228770938|gb|EEM19431.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 304

 Score =  299 bits (767), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 86/303 (28%), Positives = 160/303 (52%), Gaps = 9/303 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGG+SSE++VS+ +G    + L+   +++  I ++  + L+      D A   LHG
Sbjct: 3   IGVIMGGVSSEKQVSIMTGNEMIANLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117
            +GEDG VQ  LE L IPY+ S +L+S + MDK  SK+++   G+     I + +     
Sbjct: 63  KYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNISKKILRYEGIETPDWIELTKMEDLN 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
           +D    +  P V+KP  GGSS+G+ ++     +    +  + +    +++IEQY+ G E+
Sbjct: 123 LDELDKLGFPLVVKPNSGGSSVGVKIVYDKDELIS--MLETVFEWDSEVVIEQYIKGDEI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC ++    L +  I    ++F+ Y  KY   ++   +  ++P +I + V + +   ++A
Sbjct: 181 TCSILDGKQLPIVSIR-HAAEFFDYNAKYDDASTVEEV-IELPAEINERVNKASLACYKA 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           + C   +R D +        + +E+N  PGMT  S+ P+ A  AG  + +LL  ++E + 
Sbjct: 239 LKCSVYARVDMMV--KDGIPYVMEVNTLPGMTQASLLPKSADAAGIHYSKLLDMIIETSL 296

Query: 298 CLR 300
            +R
Sbjct: 297 RVR 299


>gi|326792886|ref|YP_004310707.1| D-alanine/D-alanine ligase [Clostridium lentocellum DSM 5427]
 gi|326543650|gb|ADZ85509.1| D-alanine/D-alanine ligase [Clostridium lentocellum DSM 5427]
          Length = 350

 Score =  299 bits (767), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 95/346 (27%), Positives = 165/346 (47%), Gaps = 54/346 (15%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL---------------- 46
           +L GG SSE EVSL S     + ++ + ++V  + + +    +L                
Sbjct: 7   LLFGGCSSEHEVSLKSATTILNNIDRSIYEVHPVGITKEGKWLLYTGTNNDLSNNEWQKS 66

Query: 47  -------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81
                                      +  D+ F VLHG  GEDG +Q + +L +IP+  
Sbjct: 67  GISAFLSPDATQKALWIFKGEGQESIKINIDIVFPVLHGKNGEDGTIQGLCQLAQIPFVG 126

Query: 82  SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--------SQHLISPPYVIKPL 133
            G+LASA+SMDK  +K  V++  VP    +LV    +          +   S PY IKP 
Sbjct: 127 CGVLASAVSMDKAFTKIAVATKNVPQARFVLVKEPELKHMEETIKKIESAFSYPYFIKPA 186

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
             GSS+GI      + +   L ++    H  ++LIE+ + G E+   VMG+  + V+ + 
Sbjct: 187 NAGSSVGISKANNKEELISGLYEAV--KHDRKVLIEETIIGREVETAVMGNDEIVVSGVG 244

Query: 194 --VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
             +  ++FY ++ KY++  S  V+ A +P +I ++++  A     A+  +G+SR DF   
Sbjct: 245 EILAAAEFYDFDAKYNNAESKTVVDADLPNEIKEKIRGYAKDVFDAVEGKGLSRVDFFV- 303

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
             + ++ + EIN  PG T +S++P + A  G S +E++  ++E AS
Sbjct: 304 KENGEIIFNEINTLPGFTSISMYPMLFAATGLSVKEIITKLLELAS 349


>gi|190359232|sp|A3CLS3|DDL_STRSV RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
          Length = 348

 Score =  299 bits (767), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 97/339 (28%), Positives = 159/339 (46%), Gaps = 44/339 (12%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL---------------- 46
           +L GG S+EREVS+ S ++   A+    F V    + +    +                 
Sbjct: 8   LLYGGRSAEREVSVLSAESVMRAVNYDRFSVKTYFITKDGDFIQTQEFEAKPAADEKLMT 67

Query: 47  -------AHLKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
                    +KP        + F VLHG  GEDG +Q  LE+L++PY    IL+S L+MD
Sbjct: 68  NATVDMSQKIKPSDIYEDGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNILSSGLAMD 127

Query: 93  KMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           K+ +K+V+ S G+   P + +           + +  ++ P   KP   GSS+GI   + 
Sbjct: 128 KITTKRVLESAGIAQVPYVALVDGEDLEQKIQEIEEKLTYPVFTKPSNMGSSVGISKSEN 187

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYEL 204
              +   L    ++ +  ++L+EQ V   E+  G++G+  +  T     V    FY YE 
Sbjct: 188 QAELRASLDL--AFKYDSRVLVEQGVTAREIEVGLLGNVDVKSTLPGEVVKDVAFYDYEA 245

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           KY     T  +PAKIP ++   +++ A  A +A+G  G+SR DF +     +VF  E+N 
Sbjct: 246 KYIDNKITMDIPAKIPEEVVSLMRQNAEAAFRALGGLGLSRCDFFY-AEDGQVFLNELNT 304

Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMV---EDASCLR 300
            PG T  S++P +    G S+ +L+  +V   E+A   R
Sbjct: 305 MPGFTQWSMYPLLWENMGLSYPDLIEKLVGLAEEAFAKR 343


>gi|21674167|ref|NP_662232.1| D-alanine-D-alanine ligase A [Chlorobium tepidum TLS]
 gi|39930903|sp|Q8KCR8|DDL_CHLTE RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|21647328|gb|AAM72574.1| D-alanine--D-alanine ligase A [Chlorobium tepidum TLS]
          Length = 364

 Score =  299 bits (767), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 94/340 (27%), Positives = 160/340 (47%), Gaps = 57/340 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS----------------VGL 44
           +A+  GG S+E E+S+ S ++ A+ ++   +++S + +DR                 +  
Sbjct: 6   VALFFGGKSAEHEISIISARSIAAQIDRNRYELSPLYIDRDGKWHASECSQQVLDTDIAA 65

Query: 45  VLAHLKP----------------------------DLAFNVLHGNFGEDGLVQAILELLE 76
           +L    P                            D+AF  LHG++GEDG +Q  L+   
Sbjct: 66  LLRSGTPESAGKRLDELTAAAAGECFDFGSFLKNTDVAFIALHGSYGEDGKLQGCLDTFG 125

Query: 77  IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT---------MDSQHLISPP 127
           IPYT  G+ ASAL+MDK+ +K    + G+ V   + +             ++       P
Sbjct: 126 IPYTGCGLTASALAMDKVLTKLCAMNAGIAVAEFMTITSCAYMANPLETIVEITKRFDWP 185

Query: 128 YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL 187
             +KP   GSS+GI  ++  + +   L  +       + L+E  + G E+   V+G++  
Sbjct: 186 LFVKPASLGSSVGISKVRNAEELAAALENAC--GLDSKALVEAAISGREIEVAVLGNSDP 243

Query: 188 DVTEIA--VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
             +E    +P SDFYSYE KY    +  V+PA +P  + +EV++ A    +A+GC G++R
Sbjct: 244 LASEPGEIIPGSDFYSYEDKYIKNEAKIVIPADLPEGVAEEVRKAALTVFKALGCEGMAR 303

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285
            DF  +  + +V   EIN  PG T +S++P M A +G  F
Sbjct: 304 VDFFVENGTNRVILNEINTIPGFTDISMYPMMMAASGIGF 343


>gi|332361733|gb|EGJ39537.1| D-alanine-D-alanine ligase [Streptococcus sanguinis SK1056]
          Length = 353

 Score =  299 bits (766), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 96/339 (28%), Positives = 160/339 (47%), Gaps = 44/339 (12%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQ--------------------------- 35
           +L GG S+EREVS+ S ++   A+    F V                             
Sbjct: 13  LLYGGRSAEREVSVLSAESVMRAVNYDRFSVKTYFITKDGDFIQTQEFEANPAADEKLMT 72

Query: 36  ---IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
              +D+ R +     +    + F VLHG  GEDG +Q  LE+L++PY    IL+S+L+MD
Sbjct: 73  NATVDMSRKIKPSDIYEDGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNILSSSLAMD 132

Query: 93  KMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           K+ +K+V+ S G+   P + +           + +  ++ P   KP   GSS+GI   + 
Sbjct: 133 KITTKRVLESAGIAQVPYVALVDGEDLEQKIQEIEEKLTYPVFTKPSNMGSSVGISKSEN 192

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYEL 204
              +   L    ++ +  ++L+EQ V   E+  G++G+  +  T     V    FY YE 
Sbjct: 193 QAELRASLDL--AFKYDSRVLVEQGVTAREIEVGLLGNVDVKSTLPGEVVKDVAFYDYEA 250

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           KY     T  +PAKIP ++   +++ A  A +A+G  G+SR DF +     +VF  E+N 
Sbjct: 251 KYIDNKITMDIPAKIPEEVVSLMRQNAETAFRALGGLGLSRCDFFYTE-DGQVFLNELNT 309

Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMV---EDASCLR 300
            PG T  S++P +    G ++ +L+  +V   E+A   R
Sbjct: 310 MPGFTQWSMYPLLWENMGLAYPDLIEKLVGLAEEAFAKR 348


>gi|78187190|ref|YP_375233.1| D-alanyl-alanine synthetase A [Chlorobium luteolum DSM 273]
 gi|123582897|sp|Q3B391|DDL_PELLD RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|78167092|gb|ABB24190.1| D-alanine--D-alanine ligase [Chlorobium luteolum DSM 273]
          Length = 361

 Score =  299 bits (766), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 112/349 (32%), Positives = 176/349 (50%), Gaps = 55/349 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44
           +A+L GG S E E+S+ S +A A+ ++   ++V  + + R  G                 
Sbjct: 6   VALLFGGRSLEHEISVISARAVAANIDRDRYRVLAVYITRDGGWYAGGVAEQILKLDIAD 65

Query: 45  ------------VLAHL--------------KPDLAFNVLHGNFGEDGLVQAILELLEIP 78
                        L  +                D+AF VLHG++GEDG VQ +LE L++P
Sbjct: 66  LIRTTSLEATAATLREMVAASAEPPFNFDFRGIDVAFPVLHGSYGEDGRVQGLLETLQVP 125

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN----RFTMDSQHLI-----SPPYV 129
            T  G+LASAL+MDK  +K   +  G+ V  S+ V     R   ++ H +     S P  
Sbjct: 126 CTGCGVLASALTMDKALTKLAAADAGLAVAVSVTVMSHAYRRDPEATHRLAVASLSFPMF 185

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           +KP+  GSS+GI  +  +  +   +  + S     ++LIEQ V G E+   V+G+ +L+ 
Sbjct: 186 VKPVSLGSSVGITKVNSESELAEAITHACSL--DSKVLIEQAVKGREVEVAVIGNDTLEA 243

Query: 190 TEIAV--PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           +      P S+FY YE KY    +   +PA+IP D+ ++V+  A  A++A+GCRG+SR D
Sbjct: 244 SPCGEIEPGSEFYDYEDKYIHDTAKLFIPARIPGDLQEKVREAALCAYRALGCRGMSRVD 303

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           F  D  +  + + EIN  PG TPVS++P + A AG  F EL   ++  A
Sbjct: 304 FFVDETTGSIVFNEINTIPGFTPVSMYPRLMAAAGTGFMELTDRLIRLA 352


>gi|302385662|ref|YP_003821484.1| D-alanine/D-alanine ligase [Clostridium saccharolyticum WM1]
 gi|302196290|gb|ADL03861.1| D-alanine/D-alanine ligase [Clostridium saccharolyticum WM1]
          Length = 351

 Score =  299 bits (766), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 103/336 (30%), Positives = 159/336 (47%), Gaps = 49/336 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID----------------------- 37
           + VL GG S EREVSLSSG    +AL   G +V  +D                       
Sbjct: 3   IVVLAGGFSPEREVSLSSGAMITNALIRTGHEVYLLDSYLGAADGEEVRFKSLHDGTGFF 62

Query: 38  --VDRSVGLVLAHLK------------------PDLAFNVLHGNFGEDGLVQAILELLEI 77
             + R V  +    K                   D+ F  LHG  GE+G +QA+L+   I
Sbjct: 63  WEIGREVPELDRLSKERNGKGYIGNRVIEICGLADIVFVALHGGAGENGQIQAVLDAYGI 122

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGS 137
            YT +G      +MDK  +K ++ + G+P     L +R   +S      P V+KP   GS
Sbjct: 123 SYTGTGYEGCLKAMDKPMAKLLMRNSGIPTPDWRLYSRG--ESLEPFPYPCVVKPCGCGS 180

Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKS 197
           S+GI +++ +    + L   S++++ D++L E  + G E + G++G+ +L   EI +PK 
Sbjct: 181 SVGITMVEGEDQWEMAL--DSAFSYEDRVLAEVKITGREFSVGILGERALPAIEI-IPKK 237

Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
            FY YE KY +  +  + PA +  +  + +  +A   H+ +G    SR DFL       +
Sbjct: 238 GFYDYENKYQAGLTEEICPASLTEEQEEFMGCMALKVHRVLGLGYYSRVDFLM-EEDGSL 296

Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           F LE N  PGMTP S+ P+ A  AG S++EL   +V
Sbjct: 297 FCLEANTLPGMTPFSLLPQKAQAAGISYQELCEEIV 332


>gi|324995315|gb|EGC27227.1| D-alanine-D-alanine ligase [Streptococcus sanguinis SK678]
          Length = 353

 Score =  299 bits (766), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 96/339 (28%), Positives = 159/339 (46%), Gaps = 44/339 (12%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQ--------------------------- 35
           +L GG S+EREVS+ S ++   A+    F V                             
Sbjct: 13  LLYGGRSAEREVSVLSAESVMRAVNYDRFSVKTYFITKDGDFIQTQEFEAKPAADEKLMT 72

Query: 36  ---IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
              +D+ + +     +    + F VLHG  GEDG +Q  LE+L++PY    IL+S L+MD
Sbjct: 73  NATVDISQKIKPSDIYEDGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNILSSGLAMD 132

Query: 93  KMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           K+ +K+V+ S G+   P + +           + +  ++ P   KP   GSS+GI   + 
Sbjct: 133 KITTKRVLESAGIAQVPYVALVDGENLEQKIQEIEEKLTYPVFTKPSNMGSSVGISKSEN 192

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYEL 204
              +   L    ++ +  ++L+EQ V   E+  G++G+  +  T     V    FY YE 
Sbjct: 193 QAELRASLDL--AFKYDSRVLVEQGVTAREIEVGLLGNVDVKSTLPGEVVKDVAFYDYEA 250

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           KY     T  +PAKIP ++   +++ A  A +A+G  G+SR DF +     +VF  E+N 
Sbjct: 251 KYIDNKITMDIPAKIPDEVVSLMRQNAEAAFRALGGLGLSRCDFFYVE-DGQVFLNELNT 309

Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMV---EDASCLR 300
            PG T  S++P +    G S+ +L+  +V   E+A   R
Sbjct: 310 MPGFTQWSMYPLLWENMGLSYPDLIEKLVGLAEEAFAKR 348


>gi|299538056|ref|ZP_07051341.1| D-alanine--D-alanine ligase [Lysinibacillus fusiformis ZC1]
 gi|298726258|gb|EFI66848.1| D-alanine--D-alanine ligase [Lysinibacillus fusiformis ZC1]
          Length = 302

 Score =  299 bits (766), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 98/299 (32%), Positives = 166/299 (55%), Gaps = 9/299 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGG SSE++VS+ +GK   + L+   ++V  I +D +  ++      D+A   LHG
Sbjct: 3   VGVIMGGTSSEKQVSIMTGKEMVAQLDKQKYEVVAITLDDNKEVIAKVGDIDVALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117
            FGEDG +Q +LE L IPYT SG+LAS+L MDK  +K+++   GV     + + +     
Sbjct: 63  KFGEDGTIQGVLETLGIPYTGSGLLASSLCMDKTMAKKILRYEGVATPDWVHLIKGEELP 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
           +    L+  P V+KP  GGSS+G+ ++    ++   + +   W   ++ +IEQY+ G E+
Sbjct: 123 LQDIELMGYPLVVKPNAGGSSVGVQIVHDRSALLAAITEVFKW--DNESIIEQYLIGDEI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC ++ +  L V  I    + F+ Y+ KY   ++    P ++PL I+  V + A ++++A
Sbjct: 181 TCPILNEQLLPVLSIK-HTAVFFDYQAKYDDASTVEE-PVELPLAIHDRVAKAAMISYKA 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           + C   +R D L        + LE+N  PGMT  S+ P+ A  AG S+  LL  ++E +
Sbjct: 239 LRCTVYARVDMLI--KDGVPYVLEVNTLPGMTQNSLLPKSALAAGISYSALLDSIIESS 295


>gi|125717545|ref|YP_001034678.1| D-alanyl-alanine synthetase A [Streptococcus sanguinis SK36]
 gi|125497462|gb|ABN44128.1| D-ala,D-ala ligase, putative [Streptococcus sanguinis SK36]
          Length = 353

 Score =  299 bits (766), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 97/339 (28%), Positives = 159/339 (46%), Gaps = 44/339 (12%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL---------------- 46
           +L GG S+EREVS+ S ++   A+    F V    + +    +                 
Sbjct: 13  LLYGGRSAEREVSVLSAESVMRAVNYDRFSVKTYFITKDGDFIQTQEFEAKPAADEKLMT 72

Query: 47  -------AHLKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
                    +KP        + F VLHG  GEDG +Q  LE+L++PY    IL+S L+MD
Sbjct: 73  NATVDMSQKIKPSDIYEDGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNILSSGLAMD 132

Query: 93  KMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           K+ +K+V+ S G+   P + +           + +  ++ P   KP   GSS+GI   + 
Sbjct: 133 KITTKRVLESAGIAQVPYVALVDGEDLEQKIQEIEEKLTYPVFTKPSNMGSSVGISKSEN 192

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYEL 204
              +   L    ++ +  ++L+EQ V   E+  G++G+  +  T     V    FY YE 
Sbjct: 193 QAELRASLDL--AFKYDSRVLVEQGVTAREIEVGLLGNVDVKSTLPGEVVKDVAFYDYEA 250

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           KY     T  +PAKIP ++   +++ A  A +A+G  G+SR DF +     +VF  E+N 
Sbjct: 251 KYIDNKITMDIPAKIPEEVVSLMRQNAEAAFRALGGLGLSRCDFFY-AEDGQVFLNELNT 309

Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMV---EDASCLR 300
            PG T  S++P +    G S+ +L+  +V   E+A   R
Sbjct: 310 MPGFTQWSMYPLLWENMGLSYPDLIEKLVGLAEEAFAKR 348


>gi|229816214|ref|ZP_04446524.1| hypothetical protein COLINT_03264 [Collinsella intestinalis DSM
           13280]
 gi|229808222|gb|EEP44014.1| hypothetical protein COLINT_03264 [Collinsella intestinalis DSM
           13280]
          Length = 325

 Score =  299 bits (766), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 124/307 (40%), Positives = 179/307 (58%), Gaps = 15/307 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGF-KVSQIDVD-RSVGLVLAHLKPDLAFNVL 58
           +AVL GGIS ERE+SL+SGK  A+AL +AG+  V  +D   R     L +   D+AF  L
Sbjct: 17  VAVLAGGISDEREISLASGKNAAAALTEAGYGTVEMVDPGERGFLSRLENGNYDVAFIAL 76

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
           HG  GEDG+ Q ILE L IPYT S  LAS ++MDK  SK +    G+PV PS+   R  M
Sbjct: 77  HGFGGEDGMTQHILEFLGIPYTGSNSLASGIAMDKDLSKLLYRRAGLPVAPSVTFTRADM 136

Query: 119 ----DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
               +   ++ P   +KP+  GSS GI ++K    +   +    ++ HGD++++E  V G
Sbjct: 137 PSIDEIVEIVGPQSFVKPVVNGSSYGISLVKDPSELTAAI--ELAFEHGDKVMVEHRVFG 194

Query: 175 IELTCGVMGDA----SLDVTEIAVP-KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           +E +   +GD     +L V EI +P +S+FY  E+KY+  N  H +PA++P D+Y +VQ 
Sbjct: 195 VECSVAALGDGETLRALPVVEIMMPQQSEFYDLEVKYADPNDIHRIPAQLPEDVYAQVQD 254

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           +A  AH+A+G  GISR+D +          LE N  PGMT  S+ P+ A +AG +F +L 
Sbjct: 255 IACRAHEALGLFGISRTDVIVTEDG--PIILETNNIPGMTSESLVPDEARHAGIAFSDLC 312

Query: 290 LWMVEDA 296
             +VE A
Sbjct: 313 AELVELA 319


>gi|294102452|ref|YP_003554310.1| D-alanine/D-alanine ligase [Aminobacterium colombiense DSM 12261]
 gi|293617432|gb|ADE57586.1| D-alanine/D-alanine ligase [Aminobacterium colombiense DSM 12261]
          Length = 328

 Score =  299 bits (766), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 109/305 (35%), Positives = 165/305 (54%), Gaps = 16/305 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR--SVGLVLAHLKPDLAFNVL 58
           +AVL GG   EREVSL SG A  SALE+AGFKV   D+     +  +      D  F  L
Sbjct: 17  VAVLYGGDGPEREVSLKSGAAVVSALEEAGFKVVPFDITDLGQLSDLRKTGHIDSVFIAL 76

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--- 115
           HG++GEDG VQ+ L+ L +PY+ SG LA  LSMDK  +K +++  GVP    +LV +   
Sbjct: 77  HGSWGEDGRVQSALDALRLPYSGSGSLACCLSMDKAATKGLLNLFGVPTPEGVLVLKGSS 136

Query: 116 FTMDSQHLISPP---YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
           F+++     +      V+KP  GGS+LG+ V+   Q +      + +W +  + +IE+Y+
Sbjct: 137 FSLEKARHFAERHHSVVVKPCNGGSTLGVTVVHNSQGLSDAF--NEAWKYDSRCVIEKYI 194

Query: 173 DGIELTCGVMGD----ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           DG++L   V        +L    I  P+  FY Y+ KY+   + +++PA     I  ++ 
Sbjct: 195 DGVDLAVTVWKQKGYLEALPEVMI-CPEKGFYDYDSKYTPGKTRYIVPAPFDPSIRSDIH 253

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           ++A  A +A+ C G +R DF  +      + LE+N  PGMT  S+ P+ AA AGY F   
Sbjct: 254 QMACRAFEALSCEGYARVDFRVEEK-GTPWVLEVNTAPGMTGTSLTPKAAAAAGYDFPAF 312

Query: 289 LLWMV 293
           L  +V
Sbjct: 313 LSHVV 317


>gi|87122625|ref|ZP_01078502.1| D-alanylalanine synthetase [Marinomonas sp. MED121]
 gi|86162083|gb|EAQ63371.1| D-alanylalanine synthetase [Marinomonas sp. MED121]
          Length = 320

 Score =  299 bits (766), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 95/306 (31%), Positives = 158/306 (51%), Gaps = 13/306 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-----DRSVGLVLAHLKPDLAF 55
           + V+ GG  +EREVSL SG    +AL+++G++ + +D+       +    L     DLAF
Sbjct: 8   ILVIYGGRCAEREVSLQSGGLVLAALQESGYQATGLDLYGQDLSLNPVEQLQSADFDLAF 67

Query: 56  NVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR 115
             LHG  GEDG +QA+LEL+  PYT S  LA   +MDK+ SK+     GVP    +    
Sbjct: 68  IALHGGEGEDGRIQALLELMGKPYTGSSPLACGFAMDKVLSKKYWQGIGVPTPTYLAFRA 127

Query: 116 FTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                    +  ++ P ++KP + GS++GI        +   L +  +  +   +L+EQ+
Sbjct: 128 PDASDIDAIEDELAYPVIVKPSREGSTIGINKANDRTQLESALAK--AREYDSDVLVEQF 185

Query: 172 VDGIELTCGVMGDASLDVTEIAVP-KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
           + G E T  ++ D +  V  +    + + Y Y+ KY + ++ ++LP+ +  D    VQ++
Sbjct: 186 IAGPEFTVTIIDDVAYPVIGLKASDEHELYDYDAKYIANDTQYLLPSGLLEDDELYVQKI 245

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A  A+Q++GC G  R D + D      + LE+N  PGMT  S+ P  AAY   S+  L+ 
Sbjct: 246 ALDAYQSLGCSGWGRVDVMQDQA-GVFWVLEVNTSPGMTSHSLVPMSAAYVDISYSALVE 304

Query: 291 WMVEDA 296
            + + A
Sbjct: 305 KIAQAA 310


>gi|257457275|ref|ZP_05622446.1| D-alanine--D-alanine ligase [Treponema vincentii ATCC 35580]
 gi|257445197|gb|EEV20269.1| D-alanine--D-alanine ligase [Treponema vincentii ATCC 35580]
          Length = 367

 Score =  299 bits (766), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 91/353 (25%), Positives = 159/353 (45%), Gaps = 60/353 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           +A++ GG S E EVSL S      A+      V  I + ++    L              
Sbjct: 3   IAIIYGGRSGEHEVSLVSASFVVRAIGSE-HTVYLIGITKNGEWYLQPSSLLGHIRKDTS 61

Query: 49  -------------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEI 77
                                          +  D+ F VLHG+FGEDG +Q + E+ ++
Sbjct: 62  AVLTIKCDKAARVAVIPGGGTAAGLSVNGTPIAADVVFPVLHGSFGEDGTIQGLFEMADL 121

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD-----------SQHLISP 126
           PY   G+LAS+ +MDK +SK +     +P+ P + V +F  D           ++  +  
Sbjct: 122 PYVGGGVLASSAAMDKEKSKIIWQHEHLPIVPFLCVRKFQWDNPKEREGFILHAEKELEY 181

Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186
           P  +KP + GSS+G         +   + ++  W    ++LIE  +   E+ C V G+  
Sbjct: 182 PLFVKPCRVGSSVGAGKASNRTELLQKMEEAFLW--DSKVLIEACIAAREIECSVTGNDE 239

Query: 187 LDV--TEIAVPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
             V      +P  +FY Y+ KY     +   +PA I  +  +E++ +A  A++A+   G+
Sbjct: 240 YVVYTPGEIIPSHEFYDYDAKYIDPDGAQLKIPADIDDEQRREIRSIAGKAYRALDLTGL 299

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +R DF  D  ++ ++  E+N  PG T +S+FP+M   +G  +REL++ + + A
Sbjct: 300 ARVDFFIDKKTKTIYLNEVNTIPGFTAISMFPKMCEASGMPYRELIMHLFDLA 352


>gi|73662109|ref|YP_300890.1| D-alanyl-alanine synthetase A [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|123643053|sp|Q49Z31|DDL_STAS1 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|72494624|dbj|BAE17945.1| D-alanine-D-alanine ligase [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 356

 Score =  299 bits (766), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 80/339 (23%), Positives = 151/339 (44%), Gaps = 46/339 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD-------- 52
           + ++ GG S+E +VS+ + +   +A++   +++  I +             D        
Sbjct: 6   VCIVYGGKSAEHDVSILTAQNVLNAIDKEQYQIDIIYITNDGAWKKKENIVDTINDIDSL 65

Query: 53  ------------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
                                     F +LHG  GEDG +Q + E+L+IPY  +G+LA++
Sbjct: 66  RLIDVEAGEISKLLSQGSTGNAYSAVFPLLHGPNGEDGTIQGLFEVLDIPYVGNGVLAAS 125

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSL 139
            SMDK+  KQ+ +  G+P  P +   R                 +  P  +KP   GSS+
Sbjct: 126 SSMDKLVMKQLFAHRGLPQLPYVSFLRSEYHKYEGNILKLVHDKLEYPVFVKPANLGSSV 185

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKS 197
           GI     ++ +   + ++  ++   +L+IEQ ++  E+   V+G+   + T     + + 
Sbjct: 186 GISKCNNEEELKNGIEEAFQFDR--KLVIEQGIEAREIEVAVLGNDYPETTWPGEVIKEV 243

Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
            FY Y+ KY        +PA +  ++   ++ +A  A +A  C G+ R+DF       ++
Sbjct: 244 AFYDYKAKYKDGKIKLDIPADLDEEVQMTLRNMAVEAFKATDCAGLLRADFFVT-DDNQI 302

Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           F  E N  PG T  S++P +    G S+ +L+  ++E A
Sbjct: 303 FINETNAMPGFTAFSMYPSLWENMGVSYSDLIKKLIELA 341


>gi|312143948|ref|YP_003995394.1| D-alanine/D-alanine ligase [Halanaerobium sp. 'sapolanicus']
 gi|311904599|gb|ADQ15040.1| D-alanine/D-alanine ligase [Halanaerobium sp. 'sapolanicus']
          Length = 349

 Score =  299 bits (766), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 87/340 (25%), Positives = 161/340 (47%), Gaps = 47/340 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           +A++ GG S+E EVS+ S ++  + L+ + + +  I + ++                   
Sbjct: 8   IALIYGGRSAEHEVSILSTRSIYNNLDKSKYNIFPIAISKTGRWFETEKSLEYLNSETNS 67

Query: 49  -------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
                                 DLAF VLHG +GEDG +Q   E+L+IPY    + +SA+
Sbjct: 68  IPDQADRKLFPLEVIDFLQKNIDLAFPVLHGPYGEDGKIQGFFEILDIPYVGCNLSSSAV 127

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNR----------FTMDSQHLISPPYVIKPLKGGSSL 139
           SMDK   K++ +   +P     ++ +          F  +    +  P+ +KP   GSS+
Sbjct: 128 SMDKELMKKLFAYHDIPQTKFQVLKKSQYKVKRKKEFYEELTKKLGLPFFVKPANMGSSI 187

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM---GDASLDVTEIAVPK 196
           GI  + + ++       +S++ H ++++IE +V   E+   ++    +  + +    + +
Sbjct: 188 GITKVNEKKNF--AEAINSAFEHDNKIIIENFVKAREIEASIISLDNEIRVSIPGEIIAQ 245

Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256
            DFY Y+ KY    +  V+PA+I   I KE++ LA  A  A+G   ++R DF     +  
Sbjct: 246 HDFYDYKAKYQDSKTRLVIPAEIDDKIKKEIKLLAVKAFNAVGGDALARIDFFLTE-NND 304

Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +   EIN  PG T  S++P +   +G+ +++LL  M+E A
Sbjct: 305 LLVNEINTMPGFTQFSMYPLLFKESGFPYQKLLDQMIEQA 344


>gi|152965331|ref|YP_001361115.1| D-alanine--D-alanine ligase [Kineococcus radiotolerans SRS30216]
 gi|190359142|sp|A6W7R2|DDL_KINRD RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|151359848|gb|ABS02851.1| D-alanine--D-alanine ligase [Kineococcus radiotolerans SRS30216]
          Length = 376

 Score =  299 bits (766), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 100/362 (27%), Positives = 155/362 (42%), Gaps = 68/362 (18%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           +AV+ GG SSE  +S  +     +AL+   + V  I +  +   VL              
Sbjct: 9   VAVVFGGRSSEHAISCVTAAGVLAALDGDVYDVVPIGITTTGRWVLVEDPARFELTDGAL 68

Query: 50  -------------------------------------KPDLAFNVLHGNFGEDGLVQAIL 72
                                                + D+   +LHG FGEDG +Q +L
Sbjct: 69  PEVPATGTPVGLPLDVDTKALQRLGGAPGAPALAELGEVDVVLPLLHGPFGEDGTLQGLL 128

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ--------HLI 124
           EL +  Y  SG+LASA  MDK   K +++  G+PV P         D+           +
Sbjct: 129 ELSDTRYVGSGVLASAAGMDKQVMKLLLAGQGLPVGPWTSFRARRWDTDRDGVVAEVEAL 188

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
             P  +KP + GSS+GI  +   + +   + ++ S  H  ++++E  + G E+ CGV+ D
Sbjct: 189 GYPVFVKPARAGSSIGITRVTSREGLAAAVAEAVS--HDPKVVVEAALVGREIECGVLED 246

Query: 185 -------ASLDVTEIAVPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
                   SL      V   DFY +E KY  S N     PA +P D+   V+R A    +
Sbjct: 247 LDGGEPLTSLPGEVEVVGGHDFYDFEAKYLDSGNVRLTCPADLPDDVVAAVRRTAVRVFE 306

Query: 237 AIGCRGISRSDFLFDPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           A+G  G++R D   DP   +  +   EIN  PG TP S++P M A  G  + EL+  +++
Sbjct: 307 AMGAEGLARVDLFVDPARGEDGIVVNEINTMPGFTPFSMYPRMWAATGVDYPELVHRLIQ 366

Query: 295 DA 296
            A
Sbjct: 367 LA 368


>gi|266621471|ref|ZP_06114406.1| D-alanine--D-alanine ligase [Clostridium hathewayi DSM 13479]
 gi|288866846|gb|EFC99144.1| D-alanine--D-alanine ligase [Clostridium hathewayi DSM 13479]
          Length = 358

 Score =  299 bits (766), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 104/339 (30%), Positives = 164/339 (48%), Gaps = 50/339 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------------------- 38
           + VL GG S EREVSLSSG   A+AL + G +V  +D                       
Sbjct: 20  IIVLAGGYSPEREVSLSSGSLIANALMEQGHEVFFLDPWPGIREGEEVRYRTREEGYHFS 79

Query: 39  -------------------DRSV---GLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLE 76
                               +++   G++ A  + D+ F  LHG  GEDG +QA+LE   
Sbjct: 80  SEIGMEAPDLEKLRAGHGMKKTLIGPGVLKACREADMVFIALHGGAGEDGQIQAVLEAYG 139

Query: 77  IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGG 136
           IP+T S      L+MDK  SK  +   GV      L  +        +  P V+KPL  G
Sbjct: 140 IPHTGSSWKGCLLAMDKNISKIFMRMAGVATPDWYLAEKGKTSRPDFL--PCVVKPLDCG 197

Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK 196
           SS+G+ ++++++     L   ++++HG ++L+E+ + G E + GV+GD +L   EI +P+
Sbjct: 198 SSVGVTIVEREEEWSAAL--EAAFSHGGRVLVEKKITGREFSVGVLGDRALPAIEI-IPE 254

Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256
           S FY Y+ KY    +  + PA I      +++  A   H+ +     SR DF+ D     
Sbjct: 255 SGFYDYQNKYQPGMTREICPAWIDGMQEVKMKETALTVHRILELGYYSRVDFMMDE-DGA 313

Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           ++ LE N  PGMTP+S+ P+ A  AG ++ EL   +V +
Sbjct: 314 IYCLEANTLPGMTPLSLLPQEAKAAGITYHELCEAIVNN 352


>gi|238916547|ref|YP_002930064.1| D-alanine-D-alanine ligase [Eubacterium eligens ATCC 27750]
 gi|238871907|gb|ACR71617.1| D-alanine-D-alanine ligase [Eubacterium eligens ATCC 27750]
          Length = 382

 Score =  299 bits (766), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 105/340 (30%), Positives = 165/340 (48%), Gaps = 52/340 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------------DRSVGLV 45
           + VL GG S+ER+VSL +G     +L   G + + +D+                  +G +
Sbjct: 42  IVVLAGGTSTERDVSLVTGYRVCESLRRNGHEANMLDIFLGVDDSEVKTFFTEKNDLGEL 101

Query: 46  LAHLK-------------------------------PDLAFNVLHGNFGEDGLVQAILEL 74
             +LK                                D+ F  LHG+ GEDG VQA  +L
Sbjct: 102 SDNLKKKTADIPAEVKRRTEARESFFGRNVLELCKEADMVFMGLHGSNGEDGKVQATFDL 161

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLK 134
           L I YT +  L+SA+SM K  +K+V+   G+P+   + +++        +  P V+KP  
Sbjct: 162 LGIRYTGTDYLSSAISMSKELAKKVLVPEGIPMPKGVTLHKGH--KIEYVPFPCVVKPCC 219

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194
           GGSS+G+ +   ++     L +  ++++ D +L+E++VDG E +  V+   +L V EI  
Sbjct: 220 GGSSVGVSIAHNEKEFEDALDE--AFSYEDTVLVEEFVDGREFSVAVLDGKALPVIEIE- 276

Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
           P   FY Y+ KY + ++    PA IP DI  ++Q  A    QA G    +R D L D  +
Sbjct: 277 PLEGFYDYKNKYKAGSTKETCPANIPEDIASQMQFWAEKCCQAAGVTTYARVDELLDK-N 335

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             +F LEIN  PGMT  S+ P+ AA  G S+ EL   ++E
Sbjct: 336 NNIFCLEINTLPGMTDTSLIPQEAAAVGISYDELTEKIIE 375


>gi|238019067|ref|ZP_04599493.1| hypothetical protein VEIDISOL_00929 [Veillonella dispar ATCC 17748]
 gi|237864322|gb|EEP65612.1| hypothetical protein VEIDISOL_00929 [Veillonella dispar ATCC 17748]
          Length = 310

 Score =  299 bits (766), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 102/305 (33%), Positives = 164/305 (53%), Gaps = 12/305 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59
           + VLMGG S E EVS  +G A A ALE  G+    ++++ R+V   +  L  ++ FN +H
Sbjct: 6   IIVLMGGPSKEAEVSRRTGAAIAEALESKGYNAQTLELNPRTVLKDIEALGGEVVFNAIH 65

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G +GEDG +Q +LE+ EIPYT SGI+A A+ M+K  SK V     +P   S   N     
Sbjct: 66  GRYGEDGALQGLLEMAEIPYTGSGIMAHAVGMNKKVSKDVFKGANIPTAASESFNGNLES 125

Query: 120 SQHLIS-------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
           ++ +I         P V+K    GSS+G+ +++ +  +   +  + +  +   L++EQ++
Sbjct: 126 AEAIIEHIRKDFTIPVVVKSATQGSSIGVTIVRDEAQLEAAV--TEALKYDPILVVEQFL 183

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
           DG E T  V+   +L V EI  P S  Y Y+ KY+   + +++PA I  ++  E+QR+  
Sbjct: 184 DGREFTVSVLDGKALSVIEIR-PHSGEYDYKSKYTVGATEYLVPAPISEEMTAEMQRIGE 242

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           L ++ +   G+ R D + D    K++ LE N  PGMT  S+ P+ A   G  F  L   +
Sbjct: 243 LVYREVQGSGVVRVDVMTDHAD-KMYVLEYNTVPGMTATSLVPKAAKEMGIDFPTLCEKI 301

Query: 293 VEDAS 297
           +  AS
Sbjct: 302 LLTAS 306


>gi|15676336|ref|NP_273472.1| D-alanine--D-alanine ligase [Neisseria meningitidis MC58]
 gi|254805544|ref|YP_003083765.1| D-alanine--D-alanine ligase [Neisseria meningitidis alpha14]
 gi|22095567|sp|Q9K0Y0|DDL_NEIMB RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|7225647|gb|AAF40862.1| D-alanine--D-alanine ligase [Neisseria meningitidis MC58]
 gi|254669086|emb|CBA07635.1| D-alanine--D-alanine ligase [Neisseria meningitidis alpha14]
 gi|254673373|emb|CBA08642.1| D-alanine--D-alanine ligase B [Neisseria meningitidis alpha275]
 gi|261391938|emb|CAX49400.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase;
           D-Ala-D-Ala ligase) [Neisseria meningitidis 8013]
 gi|316984934|gb|EFV63890.1| D-alanine--D-alanine ligase B [Neisseria meningitidis H44/76]
 gi|325136991|gb|EGC59588.1| D-alanine--D-alanine ligase B [Neisseria meningitidis M0579]
 gi|325140939|gb|EGC63446.1| D-alanine--D-alanine ligase B [Neisseria meningitidis CU385]
 gi|325142978|gb|EGC65335.1| D-alanine--D-alanine ligase B [Neisseria meningitidis 961-5945]
 gi|325144963|gb|EGC67246.1| D-alanine--D-alanine ligase B [Neisseria meningitidis M01-240013]
 gi|325198893|gb|ADY94349.1| D-alanine--D-alanine ligase B [Neisseria meningitidis G2136]
 gi|325199612|gb|ADY95067.1| D-alanine--D-alanine ligase B [Neisseria meningitidis H44/76]
 gi|325202765|gb|ADY98219.1| D-alanine--D-alanine ligase B [Neisseria meningitidis M01-240149]
 gi|325205493|gb|ADZ00946.1| D-alanine--D-alanine ligase B [Neisseria meningitidis M04-240196]
 gi|325208761|gb|ADZ04213.1| D-alanine--D-alanine ligase B [Neisseria meningitidis NZ-05/33]
          Length = 304

 Score =  298 bits (765), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 105/299 (35%), Positives = 157/299 (52%), Gaps = 7/299 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSERE+SL SG A  +AL+  G      D   +    L       AFN+LHG
Sbjct: 7   VAVLMGGFSSEREISLDSGTAILNALKSKGIDAYAFDPKETPLSELKAQGFQTAFNILHG 66

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--M 118
            +GEDG VQ  LELL IPYT SG+ ASA+ MDK R K +  + G+PV    +++  T   
Sbjct: 67  TYGEDGAVQGALELLGIPYTGSGVAASAIGMDKYRCKLIWQALGLPVPEFAVLHDDTDFD 126

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
             +  +  P  +KP   GSS+G++ +K    +    +     +   +++ E+++ G E +
Sbjct: 127 AVEEKLGLPMFVKPAAEGSSVGVVKVKGKGRLKS--VYEELKHLQGEIIAERFIGGGEYS 184

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQA 237
           C V+    L    I +P ++FY YE KY+  ++ +  P   +       ++ LA    QA
Sbjct: 185 CPVLNGKGLPGIHI-IPATEFYDYEAKYNRDDTIYQCPSEDLTEAEESLMRELAVRGAQA 243

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           IG  G  R DF       K++ LEIN  PGMT  S+ P+ AA  G  F +L + +++ A
Sbjct: 244 IGAEGCVRVDF-LKDTDGKLYLLEINTLPGMTSHSLVPKSAAVTGVGFADLCIEILKTA 301


>gi|229011881|ref|ZP_04169061.1| D-alanine--D-alanine ligase [Bacillus mycoides DSM 2048]
 gi|228749295|gb|EEL99140.1| D-alanine--D-alanine ligase [Bacillus mycoides DSM 2048]
          Length = 304

 Score =  298 bits (765), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 85/303 (28%), Positives = 160/303 (52%), Gaps = 9/303 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGG+SSE++VS+ +G    + L+ + +++  I ++  + L+      D A   LHG
Sbjct: 3   IGVIMGGVSSEKQVSIMTGNEMIAHLDKSKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117
            +GEDG VQ  LE L IPY+ S +L+S + MDK  SK+++   GV     I + +     
Sbjct: 63  KYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNISKKILRYEGVETPDWIELTKMEDLK 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
           ++    +  P V+KP  GGSS+G+ ++     +    +  + +    +++IE+Y+ G E+
Sbjct: 123 LEELDKLGFPLVVKPNSGGSSVGVKIVYDKNELTS--MLETVFEWDSEVVIEKYIKGDEI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC +     L +  I    + F+ Y  KY   ++   +  ++P +I + V + +   ++A
Sbjct: 181 TCSIFDGQQLPIISIR-HAAVFFDYNAKYDDTSTVEEV-IELPAEIKERVNKASLACYKA 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           + C   +R D +        + +E+N  PGMT  S+ P+ A  AG ++ +LL  ++E + 
Sbjct: 239 LKCSVYARVDMMVKE--GIPYVMEVNTLPGMTQSSLLPKSAEAAGINYSKLLDMIIETSL 296

Query: 298 CLR 300
            +R
Sbjct: 297 KVR 299


>gi|163940473|ref|YP_001645357.1| D-alanine--D-alanine ligase [Bacillus weihenstephanensis KBAB4]
 gi|163862670|gb|ABY43729.1| D-alanine--D-alanine ligase [Bacillus weihenstephanensis KBAB4]
          Length = 311

 Score =  298 bits (765), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 85/303 (28%), Positives = 160/303 (52%), Gaps = 9/303 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGG+SSE++VS+ +G    + L+ + +++  I ++  + L+      D A   LHG
Sbjct: 10  IGVIMGGVSSEKQVSIMTGNEMIAHLDKSKYEIVPITLNEKMDLIEKAKDIDFALLALHG 69

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117
            +GEDG VQ  LE L IPY+ S +L+S + MDK  SK+++   GV     I + +     
Sbjct: 70  KYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNISKKILRYEGVETPDWIELTKMEDLK 129

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
           ++    +  P V+KP  GGSS+G+ ++     +    +  + +    +++IE+Y+ G E+
Sbjct: 130 LEELDKLGFPLVVKPNSGGSSVGVKIVYDKNELIS--MLETVFEWDSEVVIEKYIKGDEI 187

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC +     L +  I    + F+ Y  KY   ++   +  ++P +I + V + +   ++A
Sbjct: 188 TCSIFDGQQLPIISIR-HAAVFFDYNAKYDDTSTVEEV-IELPAEIKERVNKASLACYKA 245

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           + C   +R D +        + +E+N  PGMT  S+ P+ A  AG ++ +LL  ++E + 
Sbjct: 246 LKCSVYARVDMMVKE--GIPYVMEVNTLPGMTQSSLLPKSAEAAGINYSKLLDMIIETSL 303

Query: 298 CLR 300
            +R
Sbjct: 304 KVR 306


>gi|15610118|ref|NP_217497.1| D-alanyl-alanine synthetase A [Mycobacterium tuberculosis H37Rv]
 gi|148662831|ref|YP_001284354.1| D-alanyl-alanine synthetase A [Mycobacterium tuberculosis H37Ra]
 gi|306777274|ref|ZP_07415611.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis
           SUMu001]
 gi|306973392|ref|ZP_07486053.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis
           SUMu010]
 gi|307081100|ref|ZP_07490270.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis
           SUMu011]
 gi|307085704|ref|ZP_07494817.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis
           SUMu012]
 gi|6919857|sp|P95114|DDL_MYCTU RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|166198493|sp|A5U6Z2|DDL_MYCTA RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|290790328|pdb|3LWB|A Chain A, Crystal Structure Of Apo D-Alanine:d-Alanine Ligase (Ddl)
           From Mycobacterium Tuberculosis
 gi|290790329|pdb|3LWB|B Chain B, Crystal Structure Of Apo D-Alanine:d-Alanine Ligase (Ddl)
           From Mycobacterium Tuberculosis
 gi|1694850|emb|CAB05431.1| PROBABLE D-ALANINE--D-ALANINE LIGASE DDLA (D-ALANYLALANINE
           SYNTHETASE) (D-ALA-D-ALA LIGASE) [Mycobacterium
           tuberculosis H37Rv]
 gi|148506983|gb|ABQ74792.1| D-alanylalanine synthetase [Mycobacterium tuberculosis H37Ra]
 gi|308214324|gb|EFO73723.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis
           SUMu001]
 gi|308357192|gb|EFP46043.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis
           SUMu010]
 gi|308361146|gb|EFP49997.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis
           SUMu011]
 gi|308364739|gb|EFP53590.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis
           SUMu012]
          Length = 373

 Score =  298 bits (765), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 98/356 (27%), Positives = 160/356 (44%), Gaps = 65/356 (18%)

Query: 5   MGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD------------ 52
            GG S+E  +S  S  +    L+   F V  + +  +   VL    PD            
Sbjct: 17  FGGRSNEHAISCVSAGSILRNLDSRRFDVIAVGITPAGSWVLTDANPDALTITNRELPQV 76

Query: 53  -----------------------------------LAFNVLHGNFGEDGLVQAILELLEI 77
                                              + F VLHG +GEDG +Q +LEL  +
Sbjct: 77  KSGSGTELALPADPRRGGQLVSLPPGAGEVLESVDVVFPVLHGPYGEDGTIQGLLELAGV 136

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQ--HLISPPYVIKPL 133
           PY  +G+LASA+ MDK  +K+++++ G+PV    ++   R T+  Q    +  P  +KP 
Sbjct: 137 PYVGAGVLASAVGMDKEFTKKLLAADGLPVGAYAVLRPPRSTLHRQECERLGLPVFVKPA 196

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG--DASLDVT- 190
           +GGSS+G+  +     +P  +  + +  H  ++++E  + G EL CGV+   D +L+ + 
Sbjct: 197 RGGSSIGVSRVSSWDQLPAAV--ARARRHDPKVIVEAAISGRELECGVLEMPDGTLEAST 254

Query: 191 --EIAVP-----KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
             EI V      +  FY +  KY    +   +PAK+   + + +++LA  A  AI CRG+
Sbjct: 255 LGEIRVAGVRGREDSFYDFATKYLDDAAELDVPAKVDDQVAEAIRQLAIRAFAAIDCRGL 314

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
           +R DF            EIN  PG T +S++P M A +G  +  LL  M+E     
Sbjct: 315 ARVDFFLT--DDGPVINEINTMPGFTTISMYPRMWAASGVDYPTLLATMIETTLAR 368


>gi|229060293|ref|ZP_04197660.1| D-alanine--D-alanine ligase [Bacillus cereus AH603]
 gi|229167456|ref|ZP_04295194.1| D-alanine--D-alanine ligase [Bacillus cereus AH621]
 gi|228616018|gb|EEK73105.1| D-alanine--D-alanine ligase [Bacillus cereus AH621]
 gi|228719020|gb|EEL70636.1| D-alanine--D-alanine ligase [Bacillus cereus AH603]
          Length = 304

 Score =  298 bits (765), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 85/303 (28%), Positives = 160/303 (52%), Gaps = 9/303 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGG+SSE++VS+ +G    + L+ + +++  I ++  + L+      D A   LHG
Sbjct: 3   IGVIMGGVSSEKQVSIMTGNEMIAHLDKSKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117
            +GEDG VQ  LE L IPY+ S +L+S + MDK  SK+++   GV     I + +     
Sbjct: 63  KYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNISKKILRYEGVETPDWIELTKMEDLK 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
           ++    +  P V+KP  GGSS+G+ ++     +    +  + +    +++IE+Y+ G E+
Sbjct: 123 LEELDKLGFPLVVKPNSGGSSVGVKIVYDKNELIS--MLETVFEWDSEVVIEKYIKGDEI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC +     L +  I    + F+ Y  KY   ++   +  ++P +I + V + +   ++A
Sbjct: 181 TCSIFDGQQLPIISIR-HAAVFFDYNAKYDDTSTVEEV-IELPAEIKERVNKASLACYKA 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           + C   +R D +        + +E+N  PGMT  S+ P+ A  AG ++ +LL  ++E + 
Sbjct: 239 LKCSVYARVDMMVKE--GIPYVMEVNTLPGMTQSSLLPKSAEAAGINYSKLLDMIIETSL 296

Query: 298 CLR 300
            +R
Sbjct: 297 KVR 299


>gi|325068478|ref|ZP_08127151.1| D-alanyl-alanine synthetase A [Actinomyces oris K20]
          Length = 388

 Score =  298 bits (765), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 91/365 (24%), Positives = 157/365 (43%), Gaps = 69/365 (18%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +AV+ GG S E  +S ++     SA++   ++V  + +      +L    P         
Sbjct: 21  VAVVFGGRSGEHTISCATAAGVLSAIDRNRYEVLPVGITPEGQWLLVEDDPAALELSDNR 80

Query: 52  --------------------------------------DLAFNVLHGNFGEDGLVQAILE 73
                                                 D+   +LHG +GEDG +Q +LE
Sbjct: 81  PPVTITAEGLGRGRLTAPLGGGELTVLGPTGPEVLGQVDVVLPLLHGPYGEDGTIQGMLE 140

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTMDSQHLIS------ 125
           ++ IPY   G+LASA  MDK  +K ++ + G+   P ++V  + +  D + ++       
Sbjct: 141 MMGIPYVGCGVLASAAGMDKQVTKVLLGAAGIATAPHVVVGPHAWKRDPEAILEACRSLT 200

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            P  +KP + GSSLGI  + + + +   +  + +     ++L+E  + G E+   V+   
Sbjct: 201 YPLFVKPARAGSSLGISKVDRPEDLAGAIKAARA--VDPKVLVESGIVGREVEVAVLQGR 258

Query: 186 SLDVTEIAVPK----------SDFYSYELKYSSLNST-HVLPAKIPLDIYKEVQRLAFLA 234
             D   +A P            +FY YE KY + ++   V PA+I  +    +   A  A
Sbjct: 259 GDDAPRVAEPGEIAMDASQGAGEFYDYETKYLAHDAVAMVCPARIDPEARALLMDTAARA 318

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            +A+GC G++R DF        V   EIN  PG TP S++P M   +G  + EL+  ++E
Sbjct: 319 FEALGCEGLARVDFFLTEAGEAV-VNEINTMPGFTPFSMYPYMWQVSGLGYTELVSELIE 377

Query: 295 DASCL 299
            A   
Sbjct: 378 LAVAR 382


>gi|167614192|gb|ABZ89697.1| D-alanine--D-alanine ligase [Buchnera aphidicola]
          Length = 310

 Score =  298 bits (765), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 102/302 (33%), Positives = 168/302 (55%), Gaps = 13/302 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+ER++S+SSG A   +L  +G K    D      + L   K D A+  LHG
Sbjct: 5   VAVLLGGNSTERKISISSGHAVLKSLMRSGIKAYPFDTRDFPIMQLKKQKFDTAYIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LE L+IPYT SGI+AS++S+DK R+K +  S G+PV P + + +  +  
Sbjct: 65  KGGEDGSIQGVLEYLKIPYTGSGIMASSISLDKKRTKLLWKSAGLPVLPDVYIQKKDILK 124

Query: 121 QH---------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P ++KP   GSS+GI ++     +   +    ++N+ + +L+EQ+
Sbjct: 125 NLSSLLKKRFFKLDFPLLVKPNNQGSSIGITLVYLKNQLKNAI--EVAFNYSNTILVEQF 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++ +  L   +I   K++FY +  KY   ++ ++ P+ + L   K+++++A
Sbjct: 183 IKGTEYTVSILDEKILPSIQIIT-KNNFYDFASKYQLSSTQYLCPSGLNLKQEKKLKKIA 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A   +GC G  R D + D  + K + LEIN  PGMT  S+ P  A   G SF EL+L 
Sbjct: 242 KKAWDTLGCNGCGRIDVILD-SNNKFWLLEINTIPGMTNRSLLPISANAIGMSFDELVLN 300

Query: 292 MV 293
           ++
Sbjct: 301 IL 302


>gi|238063267|ref|ZP_04607976.1| D-alanine-D-alanine ligase [Micromonospora sp. ATCC 39149]
 gi|237885078|gb|EEP73906.1| D-alanine-D-alanine ligase [Micromonospora sp. ATCC 39149]
          Length = 365

 Score =  298 bits (765), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 98/353 (27%), Positives = 161/353 (45%), Gaps = 61/353 (17%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +A++ GG S E  +S  S  +   AL+   F+V  + + R+   VL    P         
Sbjct: 9   VALVFGGRSPEHGISCVSAGSVLGALDPDEFEVVPVGITRAGKWVLTSADPAQLAISARR 68

Query: 52  --------------------------------------DLAFNVLHGNFGEDGLVQAILE 73
                                                 D+ F VLHG +GEDG +Q +LE
Sbjct: 69  LPEITADAGADLVLRADPTGSGLMVLDPAEGPRAIADVDVVFPVLHGAYGEDGTIQGMLE 128

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF---TMDSQHLISPPYVI 130
           +  IPY  + + ASA +MDK  +K++ +  G+PV P  ++      + + +  +  P  +
Sbjct: 129 MAGIPYVGANVFASAAAMDKEFTKKLCAVEGIPVGPYAVLRNGVTLSEEDKRRLGLPVFV 188

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190
           KP + GSS GI  +  D  + L+   +++     ++L+E  + G E+ CGV+   +    
Sbjct: 189 KPSRAGSSFGITKV--DDWVDLEAAVAAAREIDPKVLVEAAIVGREIECGVLEGEAGGGA 246

Query: 191 EIAV-------PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           E +V          D+Y +E KY S    + LPA +P  + ++VQ  A  A  A+ C G+
Sbjct: 247 EASVLVEVRAGGDHDWYDFEAKYLSEP-EYDLPATLPEHVTRQVQEYAVRAFAALDCAGL 305

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +R DF   P    V+  EIN  PG TP S+FP M A +G  + +L+  ++  A
Sbjct: 306 ARVDFFVTP-DLDVYLNEINTMPGFTPTSMFPLMWAASGLEYPKLVNRLIRTA 357


>gi|227069722|gb|ACP19236.1| ligase VanA [Enterococcus faecium]
          Length = 343

 Score =  298 bits (765), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 87/335 (25%), Positives = 148/335 (44%), Gaps = 45/335 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +A+L GG S E +VSL S    A+ +    ++   I + +S    +              
Sbjct: 6   VAILFGGCSEEHDVSLKSAIEIAANINKEKYEPLYIGITKSGVWKMCEKPCAEWENDNCY 65

Query: 52  --------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
                                     D+AF+ LHG  GEDG +Q + EL  IP+    I 
Sbjct: 66  SAVLSPDKKMHGLLVKKNHEYEINHVDVAFSALHGKSGEDGSIQGLFELSGIPFVGCDIQ 125

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145
           +SA+ MDK  +  V  + G+      ++N+         + P  +KP + GSS G+  + 
Sbjct: 126 SSAICMDKSLTYIVAKNAGIATPAFWVINKDDRPVAATFTYPVFVKPARSGSSFGVKKVN 185

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD-ASLDVTEIAVPKSDFYSY-- 202
               +  D    S+  +  ++LIEQ V G E+ C V+G+ A+L V E+   +  +  +  
Sbjct: 186 SADEL--DYAIESARQYDSKILIEQAVSGCEVGCAVLGNSAALVVGEVDQIRLQYGIFRI 243

Query: 203 ----ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
               E +  S N+   +PA +  +    +Q  A   ++A+GCRG++R D      + ++ 
Sbjct: 244 HQEVEPEKGSENAVITVPADLSAEERGRIQETAKKIYKALGCRGLARVDMFL-QDNGRIV 302

Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
             E+N  PG T  S +P M A AG +  EL+  ++
Sbjct: 303 LNEVNTLPGFTSYSRYPRMMAAAGIALPELIDRLI 337


>gi|149178379|ref|ZP_01856970.1| D-alanine--D-alanine ligase [Planctomyces maris DSM 8797]
 gi|148842797|gb|EDL57169.1| D-alanine--D-alanine ligase [Planctomyces maris DSM 8797]
          Length = 320

 Score =  298 bits (765), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 90/298 (30%), Positives = 145/298 (48%), Gaps = 9/298 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VL GG S+E E+SL SG+  A AL   G +V  +D              D+ F  LHG
Sbjct: 14  IVVLSGGESAESEISLKSGETVARALSSRGHQVKIVDPSLVDLDRFDWTGCDVVFLALHG 73

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117
            +GEDG +Q+ L+ L IPY+      S L+  K  SK+      V     +L++      
Sbjct: 74  TYGEDGTIQSTLDRLGIPYSGCDAATSKLAFSKSASKERFIQHNVNTPSYVLIHESDDAG 133

Query: 118 --MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175
                   +  P V+KP   GSSLG+ ++K  + +P  L  +  +++    ++E  + G 
Sbjct: 134 RIEQHARSMGYPLVVKPDAQGSSLGVTIVKSPEELPQAL--ARCFHYDSFGILESAIKGT 191

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
           E T  V+ D  L + +I  P  +F+ YE KY+  ++ ++    +P ++ + + +    A 
Sbjct: 192 EWTVTVVDDQVLPLIQIQTPH-EFFDYEAKYTEDSTQYLFEFDLPTNVIQAIIKTGVNAC 250

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            A+G  GI R D L D   ++ + LE+N  PG T  S+ P+ AA AG  F EL    +
Sbjct: 251 TALGTTGIVRVDLLVDRF-QQPWVLEVNTIPGFTDHSLVPKAAAKAGIDFGELCEQAL 307


>gi|229017909|ref|ZP_04174789.1| D-alanine--D-alanine ligase [Bacillus cereus AH1273]
 gi|229024130|ref|ZP_04180599.1| D-alanine--D-alanine ligase [Bacillus cereus AH1272]
 gi|228737163|gb|EEL87689.1| D-alanine--D-alanine ligase [Bacillus cereus AH1272]
 gi|228743385|gb|EEL93505.1| D-alanine--D-alanine ligase [Bacillus cereus AH1273]
          Length = 304

 Score =  298 bits (765), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 86/303 (28%), Positives = 162/303 (53%), Gaps = 9/303 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGG+SSE++VS+ +G    + L+ + +++  I ++  + L+      D A   LHG
Sbjct: 3   IGVIMGGVSSEKQVSIMTGNEMITHLDKSKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117
            +GEDG VQ  LE L IPY+ S +L+S + MDK  SK+++   GV     I + +     
Sbjct: 63  KYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNISKKILRYEGVETPDWIELTKMEDLK 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
           ++    I  P V+KP  GGSS+G+ ++     +    +  + +    +++IE+Y+ G E+
Sbjct: 123 LEELDKIGFPLVVKPNSGGSSVGVKIVNDKNELIS--MLETVFEWDSEVVIEKYIKGDEI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC +     L +  I    ++F+ Y  KY  +++   +  ++P +I + V + +   ++A
Sbjct: 181 TCSIFDGKQLPIISIR-HAAEFFDYNAKYDDVSTIEEV-IELPAEIKERVNKASIACYKA 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           + C   +R D +        + +E+N  PGMT  S+ P+ A  AG ++ +LL  ++E + 
Sbjct: 239 LKCSVYARVDMMV--KDGIPYVMEVNTLPGMTQSSLLPKSADAAGINYSKLLDMIIETSL 296

Query: 298 CLR 300
            +R
Sbjct: 297 KVR 299


>gi|291540930|emb|CBL14041.1| D-alanine--D-alanine ligase [Roseburia intestinalis XB6B4]
          Length = 351

 Score =  298 bits (765), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 107/345 (31%), Positives = 165/345 (47%), Gaps = 55/345 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------------DRS---- 41
           + VL GG+S+ER+VS  +G   A AL + G +V  +DV               DRS    
Sbjct: 3   IVVLAGGLSTERDVSFKTGDMVAKALRENGHQVILLDVFMGYSDKKEDLTGIFDRSEEVS 62

Query: 42  --------VGLVLAHLKP---------------------DLAFNVLHGNFGEDGLVQAIL 72
                   +   LA +K                      D+ F  LHG  GE+G +QA  
Sbjct: 63  VKVSGIPEIAPDLAKVKASRKDQSDNFFGPNVIELCQMSDIVFMALHGENGENGKIQAAF 122

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---FTMDSQHLISPPYV 129
           +L  I YT +G L+SAL+MDK  SK++  S G+P      + +       ++  I  P V
Sbjct: 123 DLFGIRYTGTGYLSSALAMDKEMSKKLFLSAGIPAPKGASMKKADCSDDITKLGIQFPCV 182

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           +KP  GGSS+G+ +    +     L ++  W     L++E+YV G E + GV+   +L +
Sbjct: 183 VKPCCGGSSIGVSIAHNAEEYKAALDEAFRWEEN--LIVEEYVKGREFSVGVIEGKALPI 240

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
            EIA P   FY Y+ KY + ++    PA++   + +++Q  A    Q +G    SR+DFL
Sbjct: 241 IEIA-PVQGFYDYKNKYKAGSAVETCPAELSEAVTEKMQHYAEQVAQVLGLDTYSRTDFL 299

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            D     ++ LE N  PGMTP S+ P+ A   G +F EL   +++
Sbjct: 300 LDENEN-IYCLEANTLPGMTPTSLLPQEAQVVGVNFNELCEKLIQ 343


>gi|167969998|ref|ZP_02552275.1| D-alanyl-alanine synthetase A [Mycobacterium tuberculosis H37Ra]
          Length = 358

 Score =  298 bits (765), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 98/356 (27%), Positives = 160/356 (44%), Gaps = 65/356 (18%)

Query: 5   MGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD------------ 52
            GG S+E  +S  S  +    L+   F V  + +  +   VL    PD            
Sbjct: 2   FGGRSNEHAISCVSAGSILRNLDSRRFDVIAVGITPAGSWVLTDANPDALTITNRELPQV 61

Query: 53  -----------------------------------LAFNVLHGNFGEDGLVQAILELLEI 77
                                              + F VLHG +GEDG +Q +LEL  +
Sbjct: 62  KSGSGTELALPADPRRGGQLVSLPPGAGEVLESVDVVFPVLHGPYGEDGTIQGLLELAGV 121

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQ--HLISPPYVIKPL 133
           PY  +G+LASA+ MDK  +K+++++ G+PV    ++   R T+  Q    +  P  +KP 
Sbjct: 122 PYVGAGVLASAVGMDKEFTKKLLAADGLPVGAYAVLRPPRSTLHRQECERLGLPVFVKPA 181

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG--DASLDVT- 190
           +GGSS+G+  +     +P  +  + +  H  ++++E  + G EL CGV+   D +L+ + 
Sbjct: 182 RGGSSIGVSRVSSWDQLPAAV--ARARRHDPKVIVEAAISGRELECGVLEMPDGTLEAST 239

Query: 191 --EIAVP-----KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
             EI V      +  FY +  KY    +   +PAK+   + + +++LA  A  AI CRG+
Sbjct: 240 LGEIRVAGVRGREDSFYDFATKYLDDAAELDVPAKVDDQVAEAIRQLAIRAFAAIDCRGL 299

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
           +R DF            EIN  PG T +S++P M A +G  +  LL  M+E     
Sbjct: 300 ARVDFFLT--DDGPVINEINTMPGFTTISMYPRMWAASGVDYPTLLATMIETTLAR 353


>gi|30262595|ref|NP_844972.1| D-alanine--D-alanine ligase [Bacillus anthracis str. Ames]
 gi|47527903|ref|YP_019252.1| D-alanine--D-alanine ligase [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49185443|ref|YP_028695.1| D-alanine--D-alanine ligase [Bacillus anthracis str. Sterne]
 gi|165869190|ref|ZP_02213850.1| D-alanine--D-alanine ligase [Bacillus anthracis str. A0488]
 gi|167637851|ref|ZP_02396130.1| D-alanine--D-alanine ligase [Bacillus anthracis str. A0193]
 gi|170685118|ref|ZP_02876342.1| D-alanine--D-alanine ligase [Bacillus anthracis str. A0465]
 gi|170704705|ref|ZP_02895171.1| D-alanine--D-alanine ligase [Bacillus anthracis str. A0389]
 gi|177649494|ref|ZP_02932496.1| D-alanine--D-alanine ligase [Bacillus anthracis str. A0174]
 gi|190565429|ref|ZP_03018349.1| D-alanine--D-alanine ligase [Bacillus anthracis Tsiankovskii-I]
 gi|227814575|ref|YP_002814584.1| D-alanine--D-alanine ligase [Bacillus anthracis str. CDC 684]
 gi|229604698|ref|YP_002866914.1| D-alanine--D-alanine ligase [Bacillus anthracis str. A0248]
 gi|254685178|ref|ZP_05149038.1| D-alanine--D-alanine ligase [Bacillus anthracis str. CNEVA-9066]
 gi|254722585|ref|ZP_05184373.1| D-alanine--D-alanine ligase [Bacillus anthracis str. A1055]
 gi|254737629|ref|ZP_05195332.1| D-alanine--D-alanine ligase [Bacillus anthracis str. Western North
           America USA6153]
 gi|254751944|ref|ZP_05203981.1| D-alanine--D-alanine ligase [Bacillus anthracis str. Vollum]
 gi|254760465|ref|ZP_05212489.1| D-alanine--D-alanine ligase [Bacillus anthracis str. Australia 94]
 gi|39930865|sp|Q81Q29|DDL_BACAN RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|254767719|sp|C3PB71|DDL_BACAA RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|254767720|sp|C3LHM9|DDL_BACAC RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|30257227|gb|AAP26458.1| D-alanine--D-alanine ligase [Bacillus anthracis str. Ames]
 gi|47503051|gb|AAT31727.1| D-alanine--D-alanine ligase [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49179370|gb|AAT54746.1| D-alanine--D-alanine ligase [Bacillus anthracis str. Sterne]
 gi|164715916|gb|EDR21433.1| D-alanine--D-alanine ligase [Bacillus anthracis str. A0488]
 gi|167514400|gb|EDR89767.1| D-alanine--D-alanine ligase [Bacillus anthracis str. A0193]
 gi|170130506|gb|EDS99367.1| D-alanine--D-alanine ligase [Bacillus anthracis str. A0389]
 gi|170670478|gb|EDT21217.1| D-alanine--D-alanine ligase [Bacillus anthracis str. A0465]
 gi|172084568|gb|EDT69626.1| D-alanine--D-alanine ligase [Bacillus anthracis str. A0174]
 gi|190563456|gb|EDV17421.1| D-alanine--D-alanine ligase [Bacillus anthracis Tsiankovskii-I]
 gi|227002556|gb|ACP12299.1| D-alanine--D-alanine ligase [Bacillus anthracis str. CDC 684]
 gi|229269106|gb|ACQ50743.1| D-alanine--D-alanine ligase [Bacillus anthracis str. A0248]
          Length = 304

 Score =  298 bits (765), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 84/303 (27%), Positives = 158/303 (52%), Gaps = 9/303 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGG+SSE++VS+ +G    + L+   +++  I ++  + L+      D A   LHG
Sbjct: 3   IGVIMGGVSSEKQVSIMTGNEMIANLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117
            +GEDG VQ  LE L IPY+ S +L+S + MDK  SK+++   G+     I + +     
Sbjct: 63  KYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNISKKILRYEGIETPDWIELTKMEDLN 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            D    +  P V+KP  GGSS+G+ ++     +    +  + +    +++IE+Y+ G E+
Sbjct: 123 FDELDKLGFPLVVKPNSGGSSVGVKIVYDKDELIS--MLETVFEWDSEVVIEKYIKGEEI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC +     L +  I    ++F+ Y  KY   ++   +  ++P ++ + V + +   ++A
Sbjct: 181 TCSIFDGKQLPIISIR-HAAEFFDYNAKYDDASTIEEV-IELPAELKERVNKASLACYKA 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           + C   +R D +        + +E+N  PGMT  S+ P+ A  AG  + +LL  ++E + 
Sbjct: 239 LKCSVYARVDMMV--KDGIPYVMEVNTLPGMTQASLLPKSADAAGIHYSKLLDMIIETSL 296

Query: 298 CLR 300
            +R
Sbjct: 297 RVR 299


>gi|220904145|ref|YP_002479457.1| D-alanine/D-alanine ligase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
 gi|254767728|sp|B8IZ52|DDL_DESDA RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|219868444|gb|ACL48779.1| D-alanine/D-alanine ligase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
          Length = 306

 Score =  298 bits (765), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 103/304 (33%), Positives = 159/304 (52%), Gaps = 7/304 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH-LKPDLAFNVLH 59
           + ++ GG S ER+VSL+  +A   ALE  G +V+  D+  +   +LA   + D A   LH
Sbjct: 3   ILLIAGGWSPERQVSLNGARAMVPALEARGHEVTFFDLLENFNGLLAAAEQHDFALINLH 62

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT-M 118
           G  GEDGLVQA+L+ +  PY  +G   S L+++K  +KQ+    G+P      V  F   
Sbjct: 63  GAPGEDGLVQAMLDQVGCPYQGAGPAGSFLALNKCAAKQIFRRAGLPTADWDFVPAFPGK 122

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           D Q  +  P  +K   GGSSL +   +    +  D +    +  G+++++E  + G E+T
Sbjct: 123 DWQPRLPYPLFVKSNTGGSSLRLGRARNRAEL--DDIMGQIFAAGEEVIMEPVLPGREVT 180

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           CG++G+  L    I     DF++YE KY    +  + PA I  ++   VQ L   AH+A+
Sbjct: 181 CGILGEDPLPPILIEPVAGDFFNYESKYEQDGARELCPAPIGDELTARVQELTLAAHRAL 240

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE--DA 296
           G RG SR+DF+  P    +  LE+N  PGMT  S+ P  A   G  F +LL  ++E   A
Sbjct: 241 GLRGYSRADFILGP-DDSLTLLEVNTLPGMTATSLVPREARTIGLDFGQLLERLMELGLA 299

Query: 297 SCLR 300
            C +
Sbjct: 300 DCKK 303


>gi|332362739|gb|EGJ40535.1| D-alanine-D-alanine ligase [Streptococcus sanguinis SK49]
          Length = 353

 Score =  298 bits (765), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 97/339 (28%), Positives = 158/339 (46%), Gaps = 44/339 (12%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQ--------------------------- 35
           +L GG S+EREVS+ S ++   A+    F V                             
Sbjct: 13  LLYGGRSAEREVSVLSAESVMRAVNYDRFSVKTYFITKDGDFIQTQEFEANPAADDKLMT 72

Query: 36  ---IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
              +D+ R +     +    + F VLHG  GEDG +Q  LE+L++PY    IL+S+L+MD
Sbjct: 73  NATVDMSRKIKPSDIYEDGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNILSSSLAMD 132

Query: 93  KMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           K+ +K+V+ S G+   P + +           + +  ++ P   KP   GSS+GI   + 
Sbjct: 133 KITTKRVLESAGIAQVPYVALVDGEDLEQKIQEIEEQLTYPVFTKPSNMGSSVGISKSEN 192

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYEL 204
              +   L    ++ +  ++L+EQ V   E+  G++G+  +  T     V    FY YE 
Sbjct: 193 QAELRASLDL--AFKYDSRVLVEQGVTAREIEVGLLGNVDVKSTLPGEVVKDVAFYDYEA 250

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           KY     T  +PAKIP  +   +++ A  A +A+G  G+SR DF +     +VF  E+N 
Sbjct: 251 KYIDNKITMDIPAKIPEKVVSLMRQNAEAAFRALGGLGLSRCDFFY-AEDGQVFLNELNT 309

Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMV---EDASCLR 300
            PG T  S++P +    G S+ +L+  +V   E A   R
Sbjct: 310 MPGFTQWSMYPLLWENMGLSYPDLIEKLVGLAEHAFAKR 348


>gi|52142884|ref|YP_083945.1| D-alanine--D-alanine ligase [Bacillus cereus E33L]
 gi|51976353|gb|AAU17903.1| D-alanine--D-alanine ligase [Bacillus cereus E33L]
          Length = 304

 Score =  298 bits (765), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 84/303 (27%), Positives = 157/303 (51%), Gaps = 9/303 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGG+SSE++VS+ +G    + L+   +++  I ++  + L+      D A   LHG
Sbjct: 3   IGVIMGGVSSEKQVSIMTGNEMIAHLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117
            +GEDG VQ  LE L IPY+ S +L+S + MDK  SK+++   G+     I + +     
Sbjct: 63  KYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNMSKKILRYEGIETPDWIELTKMEDLN 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            D    +  P V+KP  GGSS+G+ ++     +    +  + +    +++IE+Y+ G E+
Sbjct: 123 FDELDKLGFPLVVKPNSGGSSVGVKIVYDKDELIS--MLETVFEWDSEVVIEKYIKGDEI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC +     L +  I    ++F+ Y  KY    +   +  ++P ++ + V + +   ++A
Sbjct: 181 TCSIFDGKQLPIISIR-HAAEFFDYNAKYDDAGTIEEV-IELPAELKERVNKASLACYKA 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           + C   +R D +        + +E+N  PGMT  S+ P+ A  AG  + +LL  ++E + 
Sbjct: 239 LKCSVYARVDMMV--KDGIPYVMEVNTLPGMTQASLLPKSADAAGIHYSKLLDMIIETSL 296

Query: 298 CLR 300
            +R
Sbjct: 297 RVR 299


>gi|115373733|ref|ZP_01461027.1| D-alanine--D-alanine ligase [Stigmatella aurantiaca DW4/3-1]
 gi|310823632|ref|YP_003955990.1| d-alanine--d-alanine ligase [Stigmatella aurantiaca DW4/3-1]
 gi|115369280|gb|EAU68221.1| D-alanine--D-alanine ligase [Stigmatella aurantiaca DW4/3-1]
 gi|309396704|gb|ADO74163.1| D-alanine--D-alanine ligase [Stigmatella aurantiaca DW4/3-1]
          Length = 326

 Score =  298 bits (765), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 109/301 (36%), Positives = 172/301 (57%), Gaps = 9/301 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VLMGG   EREVSL +G+A  +ALE  G  V+++     +  +L   + D+AF  LHG
Sbjct: 5   VGVLMGGWGEEREVSLKTGEAAVAALEAEGHTVTRVFAGPGLDRILRTAELDVAFLALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118
             GEDG VQ +LELLE+PYT SG+LASAL+M+K  +K++     +P      + R  +  
Sbjct: 65  RMGEDGKVQGLLELLELPYTGSGVLASALAMNKPFAKKLFRLHNLPTPQGYRIGRDELAL 124

Query: 119 --DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
             +    +  P V+KP  GGSSLG+ ++++ +++   + ++    +G + L+E++V G E
Sbjct: 125 LEERHGDLGFPCVVKPACGGSSLGLALVREPEALAPAVAEAC--RYGGEALVERFVRGRE 182

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +T G++G   L   EIA P+  F  YE KY    + + LP ++       V+ LA  A +
Sbjct: 183 VTVGILGGEVLGSCEIAAPREGF-DYEAKYK-GGTNYFLPPRLSATRLANVESLALSAWR 240

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           A+GCRG  R D +        F LE+N  PG+TP S+ P++AA  G  F +L+  ++  A
Sbjct: 241 ALGCRGYGRVDLICSEEQND-FVLEVNTLPGLTPTSLLPKIAAQRGIGFAQLVERILGLA 299

Query: 297 S 297
           +
Sbjct: 300 T 300


>gi|74058496|gb|AAZ98839.1| VanD [Enterococcus gallinarum]
          Length = 343

 Score =  298 bits (765), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 89/338 (26%), Positives = 150/338 (44%), Gaps = 45/338 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +AVL GG S E  VS+ S    A+ ++   ++   I + +S    L              
Sbjct: 6   VAVLFGGCSEEHTVSIKSAMELAANIDTEKYQPFYIGITKSGVWKLCEKPCLDWEQYAKY 65

Query: 52  --------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
                                     D+ F ++HG FGEDG +Q +LEL  IPY    I 
Sbjct: 66  PVVFSPGRNTHGFLIQKEDRYEIQPVDVVFPIIHGKFGEDGSIQGLLELSGIPYVGCDIQ 125

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145
           +S + MDK  +   V + G+ V    ++           S P  +KP + GSS G+  + 
Sbjct: 126 SSVICMDKSLAYTTVKNAGIEVPDFQIIQDGDSPKTECFSFPLFVKPARSGSSFGVNKVD 185

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYS 201
           K + +   +  + +  +  ++LIEQ V G E+ C V+G        +V +I++    F  
Sbjct: 186 KAEDLCAAI--NEARQYDRKVLIEQAVSGSEVGCAVLGTGTDLIVGEVDQISLKHGFFKI 243

Query: 202 Y---ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
           +   + +  S N+T  +PA +P  + + +Q+ A   +Q +GCRG++R D         + 
Sbjct: 244 HQEAQPEKGSENATIEVPADLPAKVRERIQKTAKKIYQVLGCRGLARIDLFLRE-DGHIV 302

Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             E+N  PG T  S +P M   AG++  EL+  ++E A
Sbjct: 303 LNEVNTMPGFTSYSRYPCMMTAAGFTLSELIDRLIELA 340


>gi|309385870|gb|ADO66795.1| vancomycin/teicoplanin A-type resistance protein VanA [Enterococcus
           faecium]
          Length = 359

 Score =  298 bits (764), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 86/335 (25%), Positives = 148/335 (44%), Gaps = 45/335 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +A+L GG S E +VS+ S    A+ +    ++   I + +S    +              
Sbjct: 22  VAILFGGCSEEHDVSVKSAIEIAANINKEKYEPLYIGITKSGVWKMCEKPCAEWENDNCY 81

Query: 52  --------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
                                     D+AF+ LHG  GEDG +Q + EL  IP+    I 
Sbjct: 82  SAVLSPDKKMHGLLVKKNHEYEINHVDVAFSALHGKSGEDGSIQGLFELSGIPFVGCDIQ 141

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145
           +SA+ MDK  +  V  + G+      ++N+         + P  +KP + GSS G+  + 
Sbjct: 142 SSAICMDKSLTYIVAKNAGIATPAFWVINKDDRPVAATFTYPVFVKPARSGSSFGVKKVN 201

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD-ASLDVTEIAVPKSDFYSY-- 202
               +  D    S+  +  ++LIEQ V G E+ C V+G+ A+L V E+   +  +  +  
Sbjct: 202 SADEL--DYAIESARQYDSKILIEQAVSGCEVGCAVLGNSAALVVGEVDQIRLQYGIFRI 259

Query: 203 ----ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
               E +  S N+   +PA +  +    +Q  A   ++A+GCRG++R D      + ++ 
Sbjct: 260 HQEVEPEKGSENAVITVPADLSAEERGRIQETAKKIYKALGCRGLARVDMFL-QDNGRIV 318

Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
             E+N  PG T  S +P M A AG +  EL+  ++
Sbjct: 319 LNEVNTLPGFTSYSRYPRMMAAAGIALPELIDRLI 353


>gi|240144453|ref|ZP_04743054.1| D-alanine--D-alanine ligase [Roseburia intestinalis L1-82]
 gi|257203564|gb|EEV01849.1| D-alanine--D-alanine ligase [Roseburia intestinalis L1-82]
          Length = 351

 Score =  298 bits (764), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 106/345 (30%), Positives = 165/345 (47%), Gaps = 55/345 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------------DRS---- 41
           + VL GG+S+ER+VS  +G   A AL + G +V  +DV               DRS    
Sbjct: 3   IVVLAGGLSTERDVSFKTGDMVAKALRENGHQVILLDVFMGYSDKKEDLTGIFDRSEEVS 62

Query: 42  --------VGLVLAHLKP---------------------DLAFNVLHGNFGEDGLVQAIL 72
                   +   LA +K                      D+ F  LHG  GE+G +QA  
Sbjct: 63  VKVSGIPEIAPDLAKVKASRKDQSDNFFGPNVIELCQMSDIVFMALHGENGENGKIQAAF 122

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---FTMDSQHLISPPYV 129
           +L  I YT +G L+SAL+MDK  SK++  S G+P      + +       ++  +  P V
Sbjct: 123 DLFGIRYTGTGYLSSALAMDKEMSKKLFLSAGIPAPKGASMKKADCSDDITKLGVQFPCV 182

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           +KP  GGSS+G+ +    +     L ++  W     L++E+YV G E + GV+   +L +
Sbjct: 183 VKPCCGGSSIGVSIAHNAEEYKAALDEAFRWEEN--LIVEEYVKGREFSVGVIEGKALPI 240

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
            EIA P   FY Y+ KY + ++    PA++   + +++Q  A    Q +G    SR+DFL
Sbjct: 241 IEIA-PVQGFYDYKNKYKAGSAVETCPAELSEAVTEKMQHYAEQVAQVLGLDTYSRTDFL 299

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            D     ++ LE N  PGMTP S+ P+ A   G +F EL   +++
Sbjct: 300 LDENEN-IYCLEANTLPGMTPTSLLPQEAQVVGVNFNELCEKLIQ 343


>gi|167757234|ref|ZP_02429361.1| hypothetical protein CLORAM_02784 [Clostridium ramosum DSM 1402]
 gi|237735682|ref|ZP_04566163.1| conserved hypothetical protein [Mollicutes bacterium D7]
 gi|167703409|gb|EDS17988.1| hypothetical protein CLORAM_02784 [Clostridium ramosum DSM 1402]
 gi|229381427|gb|EEO31518.1| conserved hypothetical protein [Coprobacillus sp. D7]
          Length = 349

 Score =  298 bits (764), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 99/335 (29%), Positives = 163/335 (48%), Gaps = 45/335 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           +A+L GG SSE EVSL S  A         + +  I + R+                   
Sbjct: 6   IAILFGGKSSEYEVSLQSAAAIIKNFPQEKYDLYLIGITRAGQWFHYDGEIEKISNDTWN 65

Query: 46  -------------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYT 80
                                    + + + D    VLHG  GEDG VQ ++EL +IP  
Sbjct: 66  QELLNPVTVCLEPERQAVMEIVDNKIIYQQIDAVLPVLHGKNGEDGTVQGLMELAKIPVL 125

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLG 140
             G+LASAL MDK R+ Q+V + G+ V  S+LV+     +   ++ P  +KPLK GSS G
Sbjct: 126 GCGLLASALCMDKYRAHQLVKAAGIKVTRSVLVHNINDFNVKALNFPLFVKPLKAGSSYG 185

Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK--SD 198
           I  + K + +   L    ++N+ +++++E+ V+G E+ C ++G+  L V E+   +    
Sbjct: 186 ISKVVKMEELTKAL--EYAFNYDNEVIVEEAVEGFEVGCAIIGNDELTVGEVDEIELSGG 243

Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
           F+ Y+ KY+   ST  +PA+I     +++Q  A + +Q + C+  +R D    P + ++ 
Sbjct: 244 FFDYDEKYTLKTSTIHMPARIDEVTARKIQETAKIIYQTLACQNFARVDMFLTP-NNEIV 302

Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           + E+N  PG T  S FP+M    G+ F EL+  +V
Sbjct: 303 FNEVNTIPGFTDHSRFPQMMKGVGFEFSELIDKIV 337


>gi|327468992|gb|EGF14464.1| D-alanine-D-alanine ligase [Streptococcus sanguinis SK330]
          Length = 353

 Score =  298 bits (764), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 96/339 (28%), Positives = 161/339 (47%), Gaps = 44/339 (12%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQ--------------------------- 35
           +L GG S+EREVS+ S ++   A+    F V                             
Sbjct: 13  LLYGGRSAEREVSVLSAESVMRAVNYDRFSVKTYFITKDGAFIQTQEFEAKPAADEKLMT 72

Query: 36  ---IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
              +D+ R +     +    + F VLHG  GEDG +Q  LE+L++PY    IL+S+L+MD
Sbjct: 73  NATVDMSRKIKPSDIYEDGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNILSSSLAMD 132

Query: 93  KMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           K+ +K+V+ S G+   P + +           + +  ++ P   KP   GSS+GI   + 
Sbjct: 133 KITTKRVLESAGIAQVPYVALVDGEDLEQKIQEIEEKLTYPVFTKPSNMGSSVGISKSEN 192

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYEL 204
            + +   L    ++ +  ++L+EQ V   E+  G++G+  +  T     V    FY YE 
Sbjct: 193 REELRASLDL--AFKYDSRVLVEQGVTAREIEVGLLGNVDVKSTLPGEVVKDVAFYDYEA 250

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           KY     T  +PAKIP ++   +++ A  A +A+G  G+SR DF +     +VF  E+N 
Sbjct: 251 KYIDNKITMDIPAKIPEEVVSLMRQNAEAAFRALGGLGLSRCDFFY-AEDGQVFLNELNT 309

Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMV---EDASCLR 300
            PG T  S++P +    G ++ +L+  +V   E+A   R
Sbjct: 310 MPGFTQWSMYPLLWENMGLAYPDLIEKLVGLAEEAFAKR 348


>gi|257470795|ref|ZP_05634885.1| D-alanine--D-alanine ligase [Fusobacterium ulcerans ATCC 49185]
 gi|317064999|ref|ZP_07929484.1| D-alanine-D-alanine ligase [Fusobacterium ulcerans ATCC 49185]
 gi|313690675|gb|EFS27510.1| D-alanine-D-alanine ligase [Fusobacterium ulcerans ATCC 49185]
          Length = 288

 Score =  298 bits (764), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 116/296 (39%), Positives = 163/296 (55%), Gaps = 14/296 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-SVGLVLAHLKPDLAFNVLH 59
           +AV MGGISSEREVSL+SGKA   +L   G+    IDV + ++       + D A+   H
Sbjct: 3   IAVFMGGISSEREVSLNSGKAILESLLKQGYDAYGIDVTKENLVSAFIDNEYDFAYLAFH 62

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G FGEDG VQ +L++L  PYT SG  AS ++MDK+ +K++  S GV V  +         
Sbjct: 63  GGFGEDGRVQGLLDMLGKPYTGSGAEASGIAMDKVITKKLAESAGVRVAKNY------DK 116

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
              + S P VIKP   GSS+GI      +       +      G +++IE+ + G ELT 
Sbjct: 117 VSDIDSYPVVIKPALEGSSVGIFFCHNREEAEKAAGELV----GKKIVIEEMITGDELTV 172

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
           GV+    + V  I +PK++FY YE KY+   S H  PAKI    Y E    A   H  +G
Sbjct: 173 GVINGEGIGVLRI-IPKNEFYDYESKYAEGGSVHEYPAKIDKKAYDEALENAVKVHNVLG 231

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
             GISRSDF+      KV++LE+N  PGMT  S+ P++A   GY++ +++  MVE 
Sbjct: 232 LAGISRSDFIL--KDDKVYFLEVNTLPGMTKTSLIPDLATLKGYTYDDVVRIMVET 285


>gi|229133446|ref|ZP_04262273.1| D-alanine--D-alanine ligase [Bacillus cereus BDRD-ST196]
 gi|228649846|gb|EEL05854.1| D-alanine--D-alanine ligase [Bacillus cereus BDRD-ST196]
          Length = 304

 Score =  298 bits (764), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 86/303 (28%), Positives = 160/303 (52%), Gaps = 9/303 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGG+SSE++VS+ +G    + L+ + +++  I ++  + L+      D A   LHG
Sbjct: 3   IGVIMGGVSSEKQVSIMTGNEMIAHLDKSKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117
            +GEDG VQ  LE L IPY+ S +L+S + MDK  SK+++   GV     I + +     
Sbjct: 63  KYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNISKKILRYEGVETPDWIELTKMEDLK 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
           ++    I  P V+KP  GGSS+G+ ++     +    +  + +    +++IE+Y+ G E+
Sbjct: 123 LEELDKIGFPLVVKPNSGGSSVGVKIVYDKNELIS--MLETVFEWDSEVVIEKYIKGDEI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC +     L +  I    + F+ Y  KY   ++   +  ++P +I + V + +   ++A
Sbjct: 181 TCSIFDGQQLPIISIR-HAAVFFDYNAKYDDTSTVEEV-IELPAEIKERVNKASLACYKA 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           + C   +R D +        + +E+N  PGMT  S+ P+ A  AG ++ +LL  ++E + 
Sbjct: 239 LKCSVYARVDMMVKE--GIPYVMEVNTLPGMTQSSLLPKSAEAAGINYSKLLDMIIETSL 296

Query: 298 CLR 300
            +R
Sbjct: 297 KVR 299


>gi|319440504|ref|ZP_07989660.1| D-alanyl-alanine synthetase A [Corynebacterium variabile DSM 44702]
          Length = 365

 Score =  298 bits (764), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 95/355 (26%), Positives = 163/355 (45%), Gaps = 59/355 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLA------------- 47
           +AVL GG +SE  +S  S  A  S L+   ++V  + +  +   V               
Sbjct: 15  VAVLYGGQNSEHSISCLSAAAVMSHLDPDRYEVVPVGITETGMWVKGTTDTEALSAHGRD 74

Query: 48  -------------------------------HLKPDLAFNVLHGNFGEDGLVQAILELLE 76
                                          + + D+ F VLHG  GEDG VQ +LEL  
Sbjct: 75  LPTVKMSRGVHLVPGSFASGRGQLRYGDGSLYAEVDVIFPVLHGRNGEDGTVQGVLELSN 134

Query: 77  IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF---TMDSQHLISPPYVIKPL 133
           +PY  +G+LASA  MDK  +K +  + GVPV   +++      T + + +I  P  +KP 
Sbjct: 135 VPYVGNGVLASAACMDKQYTKLIARAAGVPVGDEVVLTERRDLTDEEKEMIGLPVFVKPA 194

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM--GDASLDVTE 191
           +GGSS+GI  +     +  D  ++ ++ H  ++L+E  + G+E+ CGV+   D ++  ++
Sbjct: 195 RGGSSVGISKVSDWADL--DAAEAHAFEHDTKILVEAMLHGVEVECGVLQYPDGTVHASQ 252

Query: 192 IAVPKS------DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
            ++ +        FY ++ KY     ++ +PA +P      V+R A    +A+ C G++R
Sbjct: 253 PSLLEGTEDGPEGFYGFDTKYLDDIISYEIPAPLPEGQADAVRRWAVETFRALDCEGLAR 312

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
            DF            E N  PG TP+S++P+M    G ++ ELL  ++  A   +
Sbjct: 313 VDFFVTEDG--PVLNEPNTMPGFTPISMYPKMFEATGVAYTELLDILIARALVRK 365


>gi|169829946|ref|YP_001700104.1| D-alanine--D-alanine ligase [Lysinibacillus sphaericus C3-41]
 gi|168994434|gb|ACA41974.1| D-alanine--D-alanine ligase [Lysinibacillus sphaericus C3-41]
          Length = 308

 Score =  298 bits (764), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 99/299 (33%), Positives = 164/299 (54%), Gaps = 9/299 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGG SSE++VS+ +GK   + L    + V +I ++    ++      D+A   LHG
Sbjct: 10  VGVIMGGTSSEKQVSMMTGKEMVAHLNKQKYDVVEILLEDHQEVIEKVQGIDVALLALHG 69

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117
            FGEDG +Q +LE L IPYT SG+LAS+L MDK  +K+++   G+     + + R     
Sbjct: 70  KFGEDGTIQGVLETLGIPYTGSGLLASSLCMDKNMAKKILRYEGIATPDWMHLIRGEVLP 129

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
           +    LI  P V+KP  GGSS+G+ ++    ++   + +   W   ++++IEQY+ G E+
Sbjct: 130 LQDIELIGYPLVVKPNAGGSSVGVQIVHDRNALLAAVSEVFKW--DNEIIIEQYMIGDEI 187

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC ++ D  L V  I    + F+ Y+ KY    ST   P ++PL I+  V + A  ++++
Sbjct: 188 TCPILNDKLLPVLSIK-HTAVFFDYQAKYD-DASTIEEPVELPLAIHDRVAKAAMTSYKS 245

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           + C   +R D L        + LE+N  PGMT  S+ P+ A  AG S+  LL  +++ +
Sbjct: 246 LKCSVYARVDMLIKE--GVPYVLEVNTLPGMTQNSLLPKSALAAGISYSALLDSIIDSS 302


>gi|29376797|ref|NP_815951.1| D-alanine--D-lactate ligase [Enterococcus faecalis V583]
 gi|256960856|ref|ZP_05565027.1| vancomycin B-type resistance protein vanB [Enterococcus faecalis
           Merz96]
 gi|2506340|sp|Q06893|VANB_ENTFA RecName: Full=Vancomycin B-type resistance protein VanB; AltName:
           Full=D-alanine--D-lactate ligase; AltName: Full=VanB
           ligase
 gi|460078|gb|AAC43217.1| D-alanine:D-alanine ligase-related protein induced by vancomycin
           [Enterococcus faecalis]
 gi|1209531|gb|AAB05627.1| D-Ala:D-Lac ligase [Enterococcus faecalis]
 gi|29344262|gb|AAO82021.1| D-alanine--D-lactate ligase [Enterococcus faecalis V583]
 gi|256951352|gb|EEU67984.1| vancomycin B-type resistance protein vanB [Enterococcus faecalis
           Merz96]
 gi|741410|prf||2007289A D-Ala lactate ligase
          Length = 342

 Score =  298 bits (764), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 87/337 (25%), Positives = 148/337 (43%), Gaps = 44/337 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           +A++ GG S E +VS+ S    A+ +    F    I + ++    L              
Sbjct: 6   VAIIFGGCSEEHDVSVKSAIEIAANINTEKFDPHYIGITKNGVWKLCKKPCTEWEADSLP 65

Query: 47  --------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
                                  + D+AF VLHG  GEDG +Q + EL  IPY    I +
Sbjct: 66  AIFSPDRKTHGLLVMKEREYETRRIDVAFPVLHGKCGEDGAIQGLFELSGIPYVGCDIQS 125

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           SA  MDK  +  +  + G+ V    ++ +        ++ P  +KP + GSS G+  +  
Sbjct: 126 SAACMDKSLAYILTKNAGIAVPEFQMIEKGDKPEARTLTYPVFVKPARSGSSFGVTKVNS 185

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSY 202
            + +   +   ++  +  ++LIEQ + G E+ C VMG+       +V +I +    F  +
Sbjct: 186 TEELNAAI--EAAGQYDGKILIEQAISGCEVGCAVMGNEDDLIVGEVDQIRLSHGIFRIH 243

Query: 203 ---ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
              E +  S N+  ++PA IP++    VQ  A   ++ +GCRG++R D         +  
Sbjct: 244 QENEPEKGSENAMIIVPADIPVEERNRVQETAKKVYRVLGCRGLARVDLFLQE-DGGIVL 302

Query: 260 LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            E+N  PG T  S +P MAA AG +   L+  ++  A
Sbjct: 303 NEVNTLPGFTSYSRYPRMAAAAGITLPALIDSLITLA 339


>gi|229159072|ref|ZP_04287126.1| D-alanine--D-alanine ligase [Bacillus cereus ATCC 4342]
 gi|228624398|gb|EEK81171.1| D-alanine--D-alanine ligase [Bacillus cereus ATCC 4342]
          Length = 304

 Score =  298 bits (764), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 86/303 (28%), Positives = 160/303 (52%), Gaps = 9/303 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGG+SSE++VS+ +G    + L+   +++  I ++  + L+      D A   LHG
Sbjct: 3   IGVIMGGVSSEKQVSIMTGNEMIANLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117
            +GEDG VQ  LE L IPY+ S +L+S + MDK  SK+++   G+     I + +     
Sbjct: 63  KYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNISKKILRYEGIETPDWIELTKMEDLN 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
           +D    +  P V+KP  GGSS+G+ ++     +    +  + +    +++IEQY+ G E+
Sbjct: 123 LDELDKLGFPLVVKPNSGGSSVGVKIVYDKDELIS--MLETVFEWDSEVVIEQYIKGDEI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC ++    L +  I    ++F+ Y  KY   ++   +  ++P +I + V + +   ++A
Sbjct: 181 TCSILDGKPLPIVSIR-HAAEFFDYNAKYDDASTVEEV-IELPAEINERVNKASLACYKA 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           + C   +R D +        + +E+N  PGMT  S+ P+ A  AG  + +LL  ++E + 
Sbjct: 239 LKCSVYARVDMMV--KDGIPYVMEVNTLPGMTRASLLPKSADAAGIHYSKLLDMIIETSL 296

Query: 298 CLR 300
            +R
Sbjct: 297 RVR 299


>gi|154482959|ref|ZP_02025407.1| hypothetical protein EUBVEN_00657 [Eubacterium ventriosum ATCC
           27560]
 gi|149736243|gb|EDM52129.1| hypothetical protein EUBVEN_00657 [Eubacterium ventriosum ATCC
           27560]
 gi|254966999|gb|ACT97535.1| putative D-alanine-D-alanine ligase [uncultured organism]
          Length = 343

 Score =  298 bits (764), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 102/335 (30%), Positives = 161/335 (48%), Gaps = 46/335 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------------------- 38
           + VL GG S+EREVS++SG     AL         +DV                      
Sbjct: 7   IVVLCGGNSTEREVSINSGSMVCEALRKKNHNAILMDVYFGLEDIDIFEKSASKYDVESV 66

Query: 39  DRSVGLVLAH-----------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81
            +++  +                     K D+ F  LHG  GEDG  QA  +L  I YT 
Sbjct: 67  KKNIQSLSDKVSEDRRSFFGNNVIEICQKADIVFMALHGKNGEDGKCQAAFDLYGIKYTG 126

Query: 82  SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL--ISPPYVIKPLKGGSSL 139
           SG LASA+ MDK  +KQ+  S GVP   S+ + +          +  P V+K   GGSS+
Sbjct: 127 SGHLASAIGMDKGVTKQIFMSKGVPTAKSVWIKKGESTDLKDYGMKVPVVVKACNGGSSV 186

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDF 199
           G++++ ++      +   + +   +Q+L+E ++ G E + GV+   +L V EI +P+  +
Sbjct: 187 GVVLVHQESEYEDAVK--TCFELDNQILVEDFIKGREFSIGVINKKALPVVEI-IPRDGW 243

Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
           Y Y+ KY+   +  V PA +  ++ K++Q++A  A  AIGC   +R+D + D     +F 
Sbjct: 244 YDYKNKYN-GATEEVCPANLNDELTKKIQKVAEDACNAIGCEPYARADVMMDA-DGNMFC 301

Query: 260 LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           LE+N  PGMT  S+ P+ A   G  F  L  ++VE
Sbjct: 302 LEVNTLPGMTATSLVPQEAKAVGMDFPTLCDYLVE 336


>gi|328947388|ref|YP_004364725.1| D-alanine--D-alanine ligase [Treponema succinifaciens DSM 2489]
 gi|328447712|gb|AEB13428.1| D-alanine--D-alanine ligase [Treponema succinifaciens DSM 2489]
          Length = 376

 Score =  298 bits (764), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 93/362 (25%), Positives = 165/362 (45%), Gaps = 70/362 (19%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           + ++ GG S E E+SL S  +    +  A   VS I + +     L              
Sbjct: 3   VVLIYGGKSGEHEISLLSCASVIRNI-SAKHNVSLISISKGGKWYLEDDSVFKEIRNNPE 61

Query: 49  -------------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEI 77
                                          +  D+ F VLHG +GEDG VQ + E+  +
Sbjct: 62  AALCVHENESREVKVSFGRGKDNVFFACGNYIPCDVVFPVLHGTYGEDGTVQGVFEMAGV 121

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-----------DSQHLISP 126
           P+   G+LAS+ +MDK  +K ++ + G+PV P + ++R  +           ++   +  
Sbjct: 122 PFVGCGVLASSAAMDKETTKILLKNAGIPVVPYMCISRSQINSSSLYDKLIEEAIEKLEF 181

Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186
           P  +KP   GSS G  + +  + +   L+++ SW   +++LIE+ +D  E+ C V G++ 
Sbjct: 182 PLFVKPCAAGSSDGASLARNKRELSFALMEAFSW--DNKVLIEKAIDAREVECSVTGNSV 239

Query: 187 LDVTE------------IAVPKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFL 233
              +E              VPK DFY Y+ KY+  +   + +PA +  D  + ++  A  
Sbjct: 240 TATSESDCTLLKAYGPGEIVPKHDFYDYDAKYNDPDGAELKIPALLSDDKLELIRETAKK 299

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           A+  I   G+SR DF  D  + +++  EIN  PG T +S+FP+M    G  + EL+ +++
Sbjct: 300 AYSVINASGLSRVDFFVDRKTGEIYLNEINTIPGFTKISMFPKMCDADGLEYSELIDYLL 359

Query: 294 ED 295
           ++
Sbjct: 360 KE 361


>gi|325688255|gb|EGD30274.1| D-alanine-D-alanine ligase [Streptococcus sanguinis SK72]
          Length = 353

 Score =  298 bits (764), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 95/339 (28%), Positives = 160/339 (47%), Gaps = 44/339 (12%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQ--------------------------- 35
           +L GG S+ERE+S+ S ++   A+    F V                             
Sbjct: 13  LLYGGRSAEREISVLSAESVMRAVNYDRFSVKTYFITKDGDFIQTQEFEAKPVADEKLMT 72

Query: 36  ---IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
              +D+ R +     +    + F VLHG  GEDG +Q  LE+L++PY    IL+S+L+MD
Sbjct: 73  NATVDMSRKIKPSDIYEDGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNILSSSLAMD 132

Query: 93  KMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           K+ +K+V+ S G+   P + +           + +  ++ P   KP   GSS+GI   + 
Sbjct: 133 KITTKRVLESAGIAQVPYVALVDGEDLEQKIQEIEEKLTYPVFTKPSNMGSSVGISKSEN 192

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYEL 204
              +   L    ++ +  ++L+EQ V   E+  G++G+  +  T     V    FY YE 
Sbjct: 193 RAELRASLDL--AFKYDSRVLVEQGVTAREIEVGLLGNVDVKSTLPGEVVKDVAFYDYEA 250

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           KY     T  +PAKIP ++   +++ A  A +A+G  G++R DF +     +VF  E+N 
Sbjct: 251 KYIDNKITMDIPAKIPEEVVSLMRQNAEAAFRALGGLGLARCDFFYTE-DSQVFLNELNT 309

Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMV---EDASCLR 300
            PG T  S++P +    G S+ +L+  +V   E+A   R
Sbjct: 310 MPGFTQWSMYPLLWENMGLSYPDLIEKLVGLAEEAFAKR 348


>gi|15837401|ref|NP_298089.1| D-alanine--D-alanine ligase [Xylella fastidiosa 9a5c]
 gi|9105695|gb|AAF83609.1|AE003919_20 D-alanine--D-alanine ligase B [Xylella fastidiosa 9a5c]
          Length = 320

 Score =  298 bits (764), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 104/302 (34%), Positives = 166/302 (54%), Gaps = 11/302 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL SG+     L   G     +D   ++   L   + D  FNVLHG
Sbjct: 21  VAVLLGGTSAEREVSLLSGRNVLEVLRVRGVDAQSVDGVPALAQALVERRFDRVFNVLHG 80

Query: 61  --NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
               GEDG+VQ +++   +PYT S +L SALSMDK+R+KQV  + G+P      ++    
Sbjct: 81  HNGGGEDGVVQGLMQAFGVPYTGSDVLGSALSMDKVRTKQVWLALGLPTPRYASLSVCAT 140

Query: 119 DSQ-----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
             +      ++  P +IKP K GSS+G+  +   + +   +  ++ +    +LL+EQ ++
Sbjct: 141 AVEVRQAVEMLGFPVIIKPAKEGSSVGVSRVFALEHLEEAVALAARYE--GELLMEQLIE 198

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           G ELT  ++ + +L    I VP+  +Y Y  KY + ++ +V P  +      E+ RLA  
Sbjct: 199 GDELTVSILDEMALPSIRI-VPQGQWYDYNAKYLAEDTQYVCP-GLDDVAEAEIARLALA 256

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           A +A+GCRG  R D + +  S + F LE+N  PGMT  S+ P+ A+  G  F +L+  ++
Sbjct: 257 AFRAVGCRGWGRVDVMRERGSGRFFLLEVNTAPGMTTHSLVPKAASQLGMGFDDLVWRIL 316

Query: 294 ED 295
           E 
Sbjct: 317 EQ 318


>gi|297171184|gb|ADI22193.1| D-alanine-D-alanine ligase and related ATP-grasp enzymes
           [uncultured gamma proteobacterium HF0200_34B07]
          Length = 371

 Score =  298 bits (763), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 85/342 (24%), Positives = 147/342 (42%), Gaps = 51/342 (14%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR---------------------- 40
           +L GG S+E EVS+ S ++  +A++   + V    +D+                      
Sbjct: 8   LLFGGRSAEHEVSVVSARSVYAAIDSYRYDVVLAGIDQQGRWYFGGKNSESLLSTSTVVP 67

Query: 41  -----------------SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                              G  L   + ++ F +LHG +GEDG +Q +LEL  + Y  +G
Sbjct: 68  DEQLPARLSTAGTNLVSENGDDLPDSEFEVVFPLLHGPYGEDGTIQGLLELAGLAYVGAG 127

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLK 134
           + ASA+ MDK+ ++ + ++ G+P     ++ R              +     P  +KP  
Sbjct: 128 VSASAVGMDKVLARAIFAASGLPQTQYSVIMRSEWRREQAPVLERLEEEHDYPLFVKPAN 187

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA- 193
            GSS+GI  +   Q +   L  +S ++       ++      L     G      + +  
Sbjct: 188 LGSSVGISKVHDRQGLHAALELASRFDTKXXYSKDRSKTLENLNVPFWGTTIHKXSGVGE 247

Query: 194 -VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            +P  +FY Y  KY    S  V+PA +     + VQ LA  A +AI C G++R D     
Sbjct: 248 IIPGGEFYDYTTKYIDERSQLVIPAVLEKSESEAVQELAIRAFKAIDCSGLARVDCFM-C 306

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
               V   EIN  PG TP+S++P++ A AG  + +L+  +++
Sbjct: 307 SDGSVLVNEINTMPGFTPISMYPKLWAAAGIDYGDLIDRLIQ 348


>gi|225870069|ref|YP_002746016.1| D-alanine--D-alanine ligase [Streptococcus equi subsp. equi 4047]
 gi|254767739|sp|C0M8S4|DDL_STRE4 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|225699473|emb|CAW92994.1| D-alanine--D-alanine ligase [Streptococcus equi subsp. equi 4047]
          Length = 348

 Score =  298 bits (763), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 94/332 (28%), Positives = 162/332 (48%), Gaps = 41/332 (12%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR---------------------- 40
           +L GG S+EREVS+ S ++   A++   F V    + +                      
Sbjct: 8   LLYGGRSAEREVSVLSAESVMRAVDYTKFFVKTYFISQTGQFIKTQEFSSRPTLTERLMT 67

Query: 41  -SVGLVLAHLKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
                +   ++P        + F VLHG  GEDG +Q  LE+L++PY  + IL+S+++MD
Sbjct: 68  NDTIRLEQQIRPSDIYEEGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGTNILSSSVAMD 127

Query: 93  KMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           K+ +K+V+ S G+P     +      ++R   +++ ++S P  +KP   GSS+GI   + 
Sbjct: 128 KITTKRVLESAGIPQVAYTVYIEGQDLDRCLAETEAVLSYPVFVKPANMGSSVGISKAES 187

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYEL 204
           ++ +   +L +    +  ++LIEQ V   E+  G++G+  +  T     V   DFY Y+ 
Sbjct: 188 EEELRAAILLAL--TYDSRILIEQGVLAREIEVGLLGNTDVKSTLPGEVVKNVDFYDYQA 245

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           KY     T  +PA I       ++  A  A +AIG  G+SR DF       +++  E+N 
Sbjct: 246 KYIDNEITMAIPAAIDESAMTSMRTYAETAFKAIGACGLSRCDFFL-GQDGQIYLNELNT 304

Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            PG T  S++P +  + G S+ EL+  +V  A
Sbjct: 305 MPGFTQWSMYPLLWEHMGLSYAELIEELVRLA 336


>gi|50082937|gb|AAT70090.1| D-alanyl-D-alanine ligase [Paenibacillus thiaminolyticus]
 gi|66731638|gb|AAY52005.1| VanA [Paenibacillus thiaminolyticus]
          Length = 343

 Score =  298 bits (763), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 86/335 (25%), Positives = 152/335 (45%), Gaps = 45/335 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +A+L GG S E +VS+ S +  A+ +++  ++   I + +     +              
Sbjct: 6   VAILFGGCSEEHDVSVKSAREIAANIDNEKYEPLYIGITKFGVWKMCEKPCAEWENSNCY 65

Query: 52  --------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
                                     D+AF+VLHG  GEDG +Q + EL  IPY    I 
Sbjct: 66  SAVLSPDKKMHGLLVKKNHEYEIHHVDVAFSVLHGKSGEDGSIQGLFELSGIPYVGCDIQ 125

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145
           +SA+ MDK  +  +  + G+      ++N+    +    + P  +KP + GSS G+  + 
Sbjct: 126 SSAICMDKSLTYTIAKNAGIATPDFWVINKDDKPAIDAFTYPVFVKPARSGSSYGVKKVN 185

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS----LDVTEIAVPKSDFYS 201
               +  D    S+  +  ++LIEQ V G E+ C V+G++S     +V +I +    F  
Sbjct: 186 GADEL--DAAIESARQYDSKILIEQAVLGCEVGCAVLGNSSELIVGEVDQIRLQHGIFRI 243

Query: 202 Y---ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
           +   E +  S N+   +PA + +++   +Q  A   ++A+GCRG+SR D      +  + 
Sbjct: 244 HQEAEPEKGSENAVITIPADLSVEVRGRIQETAKKIYKALGCRGLSRVDMFL-QDNGSIV 302

Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
             E+N  PG T  S +P M   AG +  EL+  ++
Sbjct: 303 LNEVNTLPGFTSYSRYPRMMVAAGITLPELIDRLI 337


>gi|332366050|gb|EGJ43806.1| D-alanine-D-alanine ligase [Streptococcus sanguinis SK1059]
          Length = 353

 Score =  298 bits (763), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 97/339 (28%), Positives = 158/339 (46%), Gaps = 44/339 (12%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQ--------------------------- 35
           +L GG S+EREVS+ S ++   A+    F V                             
Sbjct: 13  LLYGGRSAEREVSVLSAESVMRAVNYDRFSVKTYFITKDGDFIQTQEFEATPAADEKLMT 72

Query: 36  ---IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
              +D+ R +     +    + F VLHG  GEDG +Q  LE+L++PY    IL+S L+MD
Sbjct: 73  NATVDMSRKIKPSDIYEDGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNILSSGLAMD 132

Query: 93  KMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           K+ +K+V+ S G+   P + +           + +  ++ P   KP   GSS+GI   + 
Sbjct: 133 KITTKRVLESAGIAQVPYVALVDGEDLEQKIQEIEEKLTYPVFTKPSNMGSSVGISKSEN 192

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYEL 204
              +   L    ++ +  ++L+EQ V   E+  G++G+  +  T     V    FY YE 
Sbjct: 193 QAELRASLDL--AFKYDSRVLVEQGVTAREIEVGLLGNVDVKSTLPGEVVKDVAFYDYEA 250

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           KY     T  +PAKIP  +   +++ A  A +A+G  G+SR DF +     +VF  E+N 
Sbjct: 251 KYIDNKITMDIPAKIPEKVVSLMRQNAEAAFRALGGLGLSRCDFFY-AEDGQVFLNELNT 309

Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMV---EDASCLR 300
            PG T  S++P +    G S+ +L+  +V   E+A   R
Sbjct: 310 MPGFTQWSMYPLLWENMGLSYPDLIEKLVGLAEEAFAKR 348


>gi|32130422|sp|Q9PF79|DDL_XYLFA RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
          Length = 304

 Score =  298 bits (763), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 104/302 (34%), Positives = 166/302 (54%), Gaps = 11/302 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL SG+     L   G     +D   ++   L   + D  FNVLHG
Sbjct: 5   VAVLLGGTSAEREVSLLSGRNVLEVLRVRGVDAQSVDGVPALAQALVERRFDRVFNVLHG 64

Query: 61  --NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
               GEDG+VQ +++   +PYT S +L SALSMDK+R+KQV  + G+P      ++    
Sbjct: 65  HNGGGEDGVVQGLMQAFGVPYTGSDVLGSALSMDKVRTKQVWLALGLPTPRYASLSVCAT 124

Query: 119 DSQ-----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
             +      ++  P +IKP K GSS+G+  +   + +   +  ++ +    +LL+EQ ++
Sbjct: 125 AVEVRQAVEMLGFPVIIKPAKEGSSVGVSRVFALEHLEEAVALAARYE--GELLMEQLIE 182

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           G ELT  ++ + +L    I VP+  +Y Y  KY + ++ +V P  +      E+ RLA  
Sbjct: 183 GDELTVSILDEMALPSIRI-VPQGQWYDYNAKYLAEDTQYVCP-GLDDVAEAEIARLALA 240

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           A +A+GCRG  R D + +  S + F LE+N  PGMT  S+ P+ A+  G  F +L+  ++
Sbjct: 241 AFRAVGCRGWGRVDVMRERGSGRFFLLEVNTAPGMTTHSLVPKAASQLGMGFDDLVWRIL 300

Query: 294 ED 295
           E 
Sbjct: 301 EQ 302


>gi|70725955|ref|YP_252869.1| D-alanyl-alanine synthetase A [Staphylococcus haemolyticus
           JCSC1435]
 gi|123660710|sp|Q4L7W2|DDL_STAHJ RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|68446679|dbj|BAE04263.1| D-alanine-D-alanine ligase [Staphylococcus haemolyticus JCSC1435]
          Length = 356

 Score =  298 bits (763), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 80/339 (23%), Positives = 151/339 (44%), Gaps = 46/339 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           + ++ GG S+E +VS  + +   +A++   + V  I +                      
Sbjct: 6   ICIVYGGKSAEHDVSKLTAQNVLNAIDKERYLVDIIYITNDGLWKKKENITEEIKEIESL 65

Query: 49  --------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
                                  D  F +LHG  GEDG +Q + E+L++PY  +G+LA++
Sbjct: 66  NMTDIEAGEITILLKESSNGKPYDAIFPLLHGPNGEDGTIQGLFEVLDLPYVGNGVLAAS 125

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSL 139
            SMDK+  KQ+    G+P  P I   R   +          +  ++ P  +KP   GSS+
Sbjct: 126 SSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYEGNIIKLVKDKLTYPVFVKPANLGSSV 185

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKS 197
           GI     +  +   + ++  ++   +L+IEQ ++  E+   V+G+   + T     +   
Sbjct: 186 GISKCNNEDELKSGIEEAFQFDR--KLVIEQGINAREVEVAVLGNDYPETTWPGEVIKDV 243

Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
            FY Y+ KY     +  +PA++  ++   ++ +A  A +A  C G+ R+DF       ++
Sbjct: 244 AFYDYKSKYKDGKISLQIPAELDEEVQMTLRNMALEAFKATDCSGLVRADFFVTE-DNQI 302

Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           F  E N  PG T  S++P +    G S+ +L+  +++ A
Sbjct: 303 FINETNAMPGFTAFSMYPSLWENMGLSYSDLITKLIDLA 341


>gi|297182068|gb|ADI18242.1| d-alanine-d-alanine ligase and related ATP-grasp enzymes
           [uncultured gamma proteobacterium HF0200_40H22]
          Length = 362

 Score =  298 bits (763), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 96/347 (27%), Positives = 162/347 (46%), Gaps = 53/347 (15%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK------------ 50
           +L GG S+E EVS+ S ++   A++   ++V    + R+    L   K            
Sbjct: 8   LLFGGQSAEHEVSVVSARSVYQAIDTNRYEVVLAGISRTGQWFLQDSKASLLEQSDVSNA 67

Query: 51  --------------------------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84
                                      D+   +LHG  GEDG VQ +LEL +  Y  +G+
Sbjct: 68  NGLPVQLAAGQRDLVSLDGMPVGTGSFDVVLPLLHGPRGEDGSVQGLLELADAAYVGAGV 127

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPLKG 135
            ASA+ MDK  ++ V +  G+     +++ R            D +  +  P  +KP+  
Sbjct: 128 AASAVGMDKELARAVFAHAGLRQTEYLVIRRSAWSADRQAMLEDIEAKLRYPLFVKPVNL 187

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIA- 193
           GSS+GI      +S+   +  ++S  +  ++++E  V+   EL C V+G+     + I  
Sbjct: 188 GSSIGISKAHDTKSLESAIDLAAS--YDVKMMVETSVENARELECAVLGNDDPKASVIGE 245

Query: 194 -VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            +P ++FY Y  KY    S  ++PA++P  I  E+QR++  A +AI C G+ R DFL  P
Sbjct: 246 IIPGAEFYDYTTKYIDDRSQLIVPAELPESISAEIQRMSVDAFRAIDCAGLGRVDFLLAP 305

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
               +F  EIN  PG TP+S++P +   +G  + EL+  ++E A   
Sbjct: 306 S-GDIFLNEINTMPGFTPISMYPRLWQASGIPYPELINELIELALAR 351


>gi|300783664|ref|YP_003763955.1| D-alanine-D-alanine ligase [Amycolatopsis mediterranei U32]
 gi|299793178|gb|ADJ43553.1| D-alanine-D-alanine ligase [Amycolatopsis mediterranei U32]
          Length = 364

 Score =  298 bits (763), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 93/356 (26%), Positives = 158/356 (44%), Gaps = 60/356 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           +AV+ GG SSE  +S  S  +    L+   F+   + + R    VL              
Sbjct: 7   VAVVFGGRSSEHTISCLSAGSVLGHLDPERFEAVPVGITREGRWVLGSGDSAQLAVRGRE 66

Query: 50  ----------------------------------KPDLAFNVLHGNFGEDGLVQAILELL 75
                                             + D+ F VLHG FGEDG +Q +LEL 
Sbjct: 67  LPSVDDGQGLVLAGDPSSQGLVAVEAGRESELLSRVDVVFPVLHGAFGEDGTIQGLLELA 126

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF----TMDSQHLISPPYVIK 131
            IPY   G+LASA +MDK  +K+++++ G+PV     + R         +  +  P  +K
Sbjct: 127 GIPYVGPGVLASAAAMDKETAKKLLAAEGLPVGTFSALKRGQSTLEQTDREKLGLPVFVK 186

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG------DA 185
           P + GSS+GI  +     +   +  + +     ++L+E  V G E+ CGV+       +A
Sbjct: 187 PSRAGSSVGISRVADWAGLDAAIALARA--TDPKVLVEAAVVGREVECGVLEFPDGHVEA 244

Query: 186 SLDVTEIAVPKSD--FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           SL      + + +  +Y +E KY   ++   +PAK+   + ++++ +A  A +A+ C+G+
Sbjct: 245 SLPAEIRVLSEDENAWYDFETKYLGDDAELDIPAKLDDALTEKLRAMAVEAFRALDCQGL 304

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
           +R DF       ++   E+N  PG T  S +P+M    G  +  LL  +VE A   
Sbjct: 305 ARVDFFVTE-DHQLIINEVNTMPGFTTKSAYPKMWEVTGMDYPTLLTTLVETAIAR 359


>gi|164688446|ref|ZP_02212474.1| hypothetical protein CLOBAR_02091 [Clostridium bartlettii DSM
           16795]
 gi|164602859|gb|EDQ96324.1| hypothetical protein CLOBAR_02091 [Clostridium bartlettii DSM
           16795]
          Length = 301

 Score =  298 bits (763), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 93/299 (31%), Positives = 153/299 (51%), Gaps = 10/299 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLA-HLKPDLAFNVLH 59
           + V+MGGISSEREVSL+SGK+  SA+    + V ++ +D  + +V       D A  +LH
Sbjct: 5   VVVIMGGISSEREVSLNSGKSVLSAINRDKYDVHELIIDEPMDVVNKMPEGVDFALLILH 64

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL---VNRF 116
           G +GEDG +QA+LE + I Y+    L S + MDK  SK+V+ +  +P  P  +   ++  
Sbjct: 65  GKYGEDGTIQAMLESMGIKYSGCDPLTSGICMDKNMSKKVLKASNIPTAPWTIAKSLDSI 124

Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
             D+   +  P  IKP  GGSS+    + + + +   + Q       D ++IE Y+ G E
Sbjct: 125 DYDAIEKMGYPVFIKPNSGGSSVATFKVDRKEDVYEAVRQGL--EVDDIVMIEGYLPGDE 182

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL-NSTHVLPAKIPLDIYKEVQRLAFLAH 235
            T  ++        +I+ P ++F+ YE KY++   +       +  ++  E+   +    
Sbjct: 183 YTSFILNGEVFPTIKISSP-NEFFDYESKYATGAKAATEEVVYLEENLQNEINLRSEECW 241

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            A  CR   R DF+    + K + LE+N  PGMT  S+ P  A   G S+ EL+  ++E
Sbjct: 242 DAFNCRAFVRVDFIL--SNGKFYVLELNTLPGMTKTSLIPRSANAKGISYSELIDKIIE 298


>gi|312866057|ref|ZP_07726278.1| D-ala D-ala ligase N-terminal domain protein [Streptococcus downei
           F0415]
 gi|311098461|gb|EFQ56684.1| D-ala D-ala ligase N-terminal domain protein [Streptococcus downei
           F0415]
          Length = 348

 Score =  298 bits (763), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 89/328 (27%), Positives = 158/328 (48%), Gaps = 41/328 (12%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQ--------------------------- 35
           +L GG S+EREVS+ S ++   A++   F V                             
Sbjct: 8   LLYGGRSAEREVSVLSAESVMRAVDYDKFNVKTYFITQAGDFIKAQEFTSQPSESEKLMT 67

Query: 36  ---IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
              +D  ++V     + +  + F VLHG  GEDG +Q  LE+L +PY  + +L+S+++MD
Sbjct: 68  NATVDASQAVKPSDIYQENAIVFPVLHGPMGEDGSIQGFLEVLRLPYVGTNVLSSSVAMD 127

Query: 93  KMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIKPLKGGSSLGIIVIKK 146
           K+ +K V+ S GVP    +        ++ +      ++ P  +KP   GSS+GI   + 
Sbjct: 128 KITTKHVLESTGVPQVAYVTYMEGQDMAEAIARASQKLTYPVFVKPANMGSSVGISKAET 187

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYEL 204
           D  +   L  +    +  ++LIEQ V   E+  G++G++ +  T+    V    FY YE 
Sbjct: 188 DGELREALELAL--KYDSRILIEQGVVAREIEVGILGNSQVKTTQPGEVVKDVAFYDYEA 245

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           KY     +  +PA++P ++  +++  A  A +AIG  G+SR DF       +++  E+N 
Sbjct: 246 KYIDNKISMAIPAQVPEEVMDKMRTYAETAFRAIGGCGLSRCDFFLTES-GEIYLNELNT 304

Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWM 292
            PG T  S++P +    G  +++L+  +
Sbjct: 305 MPGFTQWSMYPLLWENMGLPYKDLITEL 332


>gi|171913133|ref|ZP_02928603.1| D-alanine--D-alanine ligase [Verrucomicrobium spinosum DSM 4136]
          Length = 307

 Score =  298 bits (763), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 103/304 (33%), Positives = 162/304 (53%), Gaps = 11/304 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG  SER VSL S ++   AL+  G +V +IDV  +   V   +   +A N++HG
Sbjct: 8   IAVLKGGPGSERAVSLKSAESVVEALKSLGAEVVEIDVTATDFTVPGDVV--VAVNMIHG 65

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG +QA+LE   + YT +G+  S ++ DK  SK+   + GVP   S ++ +     
Sbjct: 66  TFGEDGQLQALLEKQGVAYTGAGVETSRVAFDKNLSKEKFVAGGVPTPQSQVL-KLDGVD 124

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           Q  ++ P V+KP + GSS+G+ ++  ++ +   L  +  +      L+E++VDG ELT G
Sbjct: 125 QLRLTLPVVVKPPREGSSVGVHIVHTEEELATALADAKQYGQDT--LVEEFVDGKELTVG 182

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSS----LNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           V+G  +L V  I  P S FY    KY        + +  PA + ++  + VQ  A  A +
Sbjct: 183 VIGGEALPVIHIE-PVSGFYDINNKYPWMSGTGKTNYHCPADLDIETTQRVQEAALAAMK 241

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           A+G     R D +      + F LEIN  PGMT  S+ P+ A  AG  F +L+  ++E +
Sbjct: 242 AVGVEVYGRVDVMLRK-DGQPFVLEINTIPGMTVSSLLPKAARVAGLEFPQLMERIIELS 300

Query: 297 SCLR 300
             +R
Sbjct: 301 LEVR 304


>gi|290580905|ref|YP_003485297.1| putative D-alanine-D-alanine ligase [Streptococcus mutans NN2025]
 gi|254997804|dbj|BAH88405.1| putative D-alanine-D-alanine ligase [Streptococcus mutans NN2025]
          Length = 349

 Score =  298 bits (763), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 93/336 (27%), Positives = 157/336 (46%), Gaps = 44/336 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD-------- 52
           + +L GG S+ER+VS+ S ++   A+    F V    + ++ G  +   + D        
Sbjct: 6   LVLLYGGRSAERDVSVLSAESVMRAINYDNFLVKTYFITQA-GDFIKTQEFDSQPSETDK 64

Query: 53  -----------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
                                  + F VLHG  GEDG +Q  LE+L++PY  + IL+S++
Sbjct: 65  LMTNDTIIASQKIKPSDIYEEEAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGTNILSSSV 124

Query: 90  SMDKMRSKQVVSSCG-VPVCPSILVNRFT------MDSQHLISPPYVIKPLKGGSSLGII 142
           +MDK+ +KQV+ S   +P    + +           + +  +  P  +KP   GSS+GI 
Sbjct: 125 AMDKITTKQVLESATTIPQVAYVALIEGEPLESKLAEVEEKLIYPVFVKPANMGSSVGIS 184

Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA--VPKSDFY 200
             +    +   +  +    +  ++LIEQ VD  E+  G++G+  +  T     V    FY
Sbjct: 185 KAENRTDLKQAIALAL--KYDSRVLIEQGVDAREIEVGILGNTDVKTTLPGEIVKDVAFY 242

Query: 201 SYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260
            YE KY     T  +PA+I   I ++++  A  A + +GC G+SR DF       KV+  
Sbjct: 243 DYEAKYIDNKITMAIPAEIDPVIVEKMRDYAATAFRTLGCCGLSRCDFFLTE-DGKVYLN 301

Query: 261 EINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           E+N  PG T  S++P +    G S+ +L+  +V  A
Sbjct: 302 ELNTMPGFTQWSMYPLLWENMGLSYSDLIEELVSLA 337


>gi|171778654|ref|ZP_02919750.1| hypothetical protein STRINF_00602 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171282611|gb|EDT48035.1| hypothetical protein STRINF_00602 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 348

 Score =  297 bits (762), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 96/334 (28%), Positives = 159/334 (47%), Gaps = 41/334 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD-------- 52
           + +L GG S+EREVS+ S ++   A+    F V    + +S   +               
Sbjct: 6   LVLLYGGRSAEREVSVLSAESVMRAINYDKFFVKTYFITKSGDFIKTQEFFSKPADDEKL 65

Query: 53  ----------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
                                 + F VLHG  GEDG VQ  LE+L++PY  + IL+S+++
Sbjct: 66  MTNDTVVESQKIKPSDIYEPGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGTNILSSSVA 125

Query: 91  MDKMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
           MDK+ +K V+ S GVP+ P +       ++    +    ++ P  +KP   GSS+GI   
Sbjct: 126 MDKISTKHVLESAGVPLVPYVTYVEGSDLDAAVAEVNDKLTYPVFVKPANMGSSVGISKA 185

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202
           + + ++   +    +  +  ++LIE  V+  E+  G++G+A +  T     V    FY Y
Sbjct: 186 EDEAALRSAI--DFALKYDSRILIETGVNAREIEVGILGNADVKTTLPGEVVKDVAFYDY 243

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
           + KY     T  +PA I  DI +E++  A  A +AIG  G+SR DF        V+  E+
Sbjct: 244 DAKYIDNKITMDIPAHIDSDIMEEMRGYATTAFRAIGGCGLSRCDFFLTE-DGHVYLNEL 302

Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           N  PG T  S++P +    G ++ +L+  +VE A
Sbjct: 303 NTMPGFTQWSMYPLLWENMGLAYSDLIEKLVELA 336


>gi|67479935|gb|AAY67968.1| D-alanine:D-serine ligase [Enterococcus gallinarum]
          Length = 343

 Score =  297 bits (762), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 94/338 (27%), Positives = 163/338 (48%), Gaps = 45/338 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           +AVL GG S E  VSL+S  +   A++   ++V  I +  ++   L              
Sbjct: 4   IAVLFGGNSPEYSVSLASAASVIQAIDPLKYEVMTIGIAPTMDWYLYQGNLANVRNDTWL 63

Query: 47  --------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
                                 + PD+ F VLHG +GEDG +Q +LEL+ +PY    + A
Sbjct: 64  EDHKNCHQLTFSSQGFILGEKRIVPDVLFPVLHGKYGEDGCIQGLLELMNLPYVGCHVAA 123

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIKPLKGGSSLG 140
           SAL M+K    Q+  + G+   P++L++R+  D   +         P  IKP + GSS G
Sbjct: 124 SALCMNKWLLHQLADTMGIASAPTLLLSRYENDPATIDRFIQDHGFPIFIKPNEAGSSKG 183

Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK--SD 198
           I  +    ++   L  ++++ +G  +LI++ + GIE+ CG++G+  L +           
Sbjct: 184 ITKVTDKTALQSAL--TTAFAYGSTVLIQKAIAGIEIGCGILGNEQLTIGACDAISLVDG 241

Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
           F+ +E KY  +++T  +PA +PL +  +++  A L ++ +G  G++R DF        ++
Sbjct: 242 FFDFEEKYQLISATITVPAPLPLALESQIKEQAQLLYRNLGLTGLARIDFFVTNQ-GAIY 300

Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             EIN  PG T  S +P M A  G S+  L+  ++  A
Sbjct: 301 LNEINTMPGFTGHSRYPAMMAEVGLSYEILVEQLIALA 338


>gi|187367112|emb|CAQ51411.1| putative d-ala d-ala ligase [Prosthecobacter debontii]
          Length = 306

 Score =  297 bits (762), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 102/304 (33%), Positives = 155/304 (50%), Gaps = 11/304 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG  +EREVS  + ++  +AL+  G +V ++DV     +V       +A N++HG
Sbjct: 9   IAVLFGGPGNEREVSKKTAESVVAALKTKGAEVVEVDVHGPDFVVPE--GVFIAMNLIHG 66

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG +QAILE   IPYT +G+ +S ++ DK  SK+   + GVP   S    +     
Sbjct: 67  TFGEDGQIQAILEERGIPYTGAGVQSSRIAFDKALSKEKFIAAGVPTPRSQN-YKLDGSE 125

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I+ P V KP + GSS+G+ + +  +     +    +  +G   L+E+++DG ELT G
Sbjct: 126 PLSITIPLVSKPPREGSSVGVNICRTGEEWAKGI--EEALKYGTTTLVEEFIDGKELTVG 183

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSS----LNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           V+GD  L +  I  P   FY    KY        + +  PA++     K VQ  A  A Q
Sbjct: 184 VLGDQVLPIIHIE-PVEGFYDINNKYPWMTGTGKTLYHCPAELDEATTKRVQDAALAAFQ 242

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           + G     R D +      + F LEIN  PGMT  S+ P+ AA  G  F +L + ++E +
Sbjct: 243 SCGTEVYGRVDVMLRN-DGEPFVLEINTIPGMTSSSLLPKAAAAVGIDFPDLCVRIIELS 301

Query: 297 SCLR 300
              R
Sbjct: 302 LAAR 305


>gi|325685279|gb|EGD27393.1| D-alanine-D-alanine ligase A [Lactobacillus delbrueckii subsp.
           lactis DSM 20072]
          Length = 362

 Score =  297 bits (762), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 88/343 (25%), Positives = 165/343 (48%), Gaps = 49/343 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD--------------------- 39
           + ++ GG SSE EVS++S      A++   F V  I +                      
Sbjct: 7   VGLIFGGNSSEYEVSITSAGNIYKAIDKDKFDVHPIWITNSGYVASEADSYKVLEEPGYM 66

Query: 40  ----------RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
                      ++  + +  + D+ F ++HGN GEDG++Q +  L++ P+    +LA+A+
Sbjct: 67  VEKTDKTANLSNLIELASRPELDVLFPIVHGNLGEDGVLQGLFRLIDKPFVGVDVLAAAV 126

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ--HLISPP----------YVIKPLKGGS 137
           +MDK  +K +    GVPV   + + R+  +      +S              +KP   GS
Sbjct: 127 TMDKEFTKILAQRAGVPVAKWVSIKRYEYEDAKNQKLSYDWVSGQLGTSNLFVKPSNQGS 186

Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAV 194
           S+GI  +  D +    L  + ++ + D++L+E+ + G E+   V+G+    V+    I  
Sbjct: 187 SVGITHVTDDSNYAEAL--AEAFKYDDKVLVEEGIVGTEVETAVLGNDHPVVSGVGRIIN 244

Query: 195 PKSDFYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
             + +YSYE KYS+ ++T +  PA+IP +  ++VQ  A   +Q   C G++R D +    
Sbjct: 245 ADNTWYSYENKYSTESTTTLQIPAQIPAETAEKVQENALKIYQITECSGMARIDSMLRES 304

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             +V + E+N  PG T +S++P++    G S+ +L+  ++  A
Sbjct: 305 DGEVIFNELNALPGFTNISMYPKLFEEDGISYPDLITRLIRLA 347


>gi|148272526|ref|YP_001222087.1| D-alanine-D-alanine ligase [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
 gi|147830456|emb|CAN01391.1| D-alanine-D-alanine ligase [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
          Length = 369

 Score =  297 bits (762), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 93/359 (25%), Positives = 154/359 (42%), Gaps = 65/359 (18%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           + +L GG SSE  +S ++      A++   F+V  + +       L              
Sbjct: 7   VVLLFGGTSSEHSISCATASGVLGAIDRERFEVIPVGITPDGAFTLQEDDASALALDADA 66

Query: 50  -----------------------------------KPDLAFNVLHGNFGEDGLVQAILEL 74
                                              + D+ F +LHG  GEDG VQ +LEL
Sbjct: 67  LPRVADNGTRVRWPDGTAGRELTVRDADGAERSLGRVDVVFPILHGTQGEDGTVQGMLEL 126

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--------DSQHLISP 126
             +PY  SG+LASAL MDK  +K V+ + G+ V P I V+R           +    +  
Sbjct: 127 AGLPYVGSGVLASALGMDKHYAKTVLRAAGIEVAPWITVSRHEWAADPGGVRERAAALGL 186

Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA- 185
           P  +KP + GSS+G+  +  D  +   L    ++   D++L+E  + G E+ C ++ +  
Sbjct: 187 PAFVKPARAGSSVGVSRVSADAGLDSAL--EVAFREDDRVLVESGLVGREVECAILDEGP 244

Query: 186 -----SLDVTEIAVPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
                +    EI V   DFY ++ KY  +     V PA +      E++ L+  A +A+ 
Sbjct: 245 GREPSASVAGEIVVSGRDFYDFDAKYLGADGIDLVCPADVTDAELAELRELSIRAFRAVD 304

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
            RG++R DF            EIN  PG TP+S+FP     +G ++ +L+  +++ A  
Sbjct: 305 ARGLARVDFFLTAEG--FVLNEINTMPGFTPISMFPACWEASGLAYPDLISRLLDVALA 361


>gi|118478002|ref|YP_895153.1| D-alanine--D-alanine ligase [Bacillus thuringiensis str. Al Hakam]
 gi|118417227|gb|ABK85646.1| D-alanine--D-alanine ligase [Bacillus thuringiensis str. Al Hakam]
          Length = 311

 Score =  297 bits (762), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 85/302 (28%), Positives = 154/302 (50%), Gaps = 9/302 (2%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGN 61
            V+MGG+SSE++VS+ +G    + L+   +++  I ++  + L+      D A   LHG 
Sbjct: 11  GVIMGGVSSEKQVSIMTGNEMIAHLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHGK 70

Query: 62  FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT---M 118
           +GEDG VQ  LE L IPY+ S +L+S + MDK  SK+++   G+     I + +      
Sbjct: 71  YGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNMSKKILRYEGIETPDWIELTKMEDLNF 130

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           D    +  P V+KP  GGSS+G+ ++     +   L     W    +++IE+Y+ G E+T
Sbjct: 131 DELDKLGFPLVVKPNSGGSSVGVKIVYDKDELISTLETVFEW--DSEVVIEKYIKGDEIT 188

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           C +     L +  I    ++F+ Y  KY    +   +  ++P ++ + V + +   ++A+
Sbjct: 189 CSIFDGKQLPIISIR-HAAEFFDYNAKYDDAGTIEEV-IELPAELKERVNKASLACYKAL 246

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
            C   +R D +        + +E+N  PGMT  S+ P+ A   G  + +LL  ++E +  
Sbjct: 247 KCSVYARVDMMV--KDGIPYVMEVNTLPGMTQASLLPKSAEAEGIDYSKLLDMIIETSLR 304

Query: 299 LR 300
           +R
Sbjct: 305 VR 306


>gi|327461647|gb|EGF07978.1| D-alanine-D-alanine ligase [Streptococcus sanguinis SK1]
          Length = 353

 Score =  297 bits (762), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 97/339 (28%), Positives = 161/339 (47%), Gaps = 44/339 (12%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQ--------------------------- 35
           +L GG S+EREVS+ S ++   A+    F V                             
Sbjct: 13  LLYGGRSAEREVSVLSAESVMRAVNYDRFSVRTYFITKDGDFIQTQEFEAKPAADEKLMT 72

Query: 36  ---IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
              +D+ R +     + K  + F VLHG  GEDG +Q  LE+L++PY    IL+S+L+MD
Sbjct: 73  NATVDMSRKIKPSDIYEKGVVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNILSSSLAMD 132

Query: 93  KMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           K+ +K+V+ S G+   P + +           + +  ++ P   KP   GSS+GI   + 
Sbjct: 133 KITTKRVLESAGIAQVPYVALVDGEDLEQKIQEIEEKLTYPVFTKPSNMGSSVGISKSEN 192

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYEL 204
              +   L    ++ +  ++L+EQ V   E+  G++G+  +  T     V    FY YE 
Sbjct: 193 QAELRASLDL--AFKYDSRVLVEQGVTAREIEVGLLGNVDVKSTLPGEVVKDVAFYDYEA 250

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           KY     T  +PAKIP ++   +++ A  A +A+G  G+SR DF +     +VF  E+N 
Sbjct: 251 KYIDNKITMDIPAKIPEEVVSLMRQNAEAAFRALGGLGLSRCDFFY-AEDGQVFLNELNT 309

Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMV---EDASCLR 300
            PG T  S++P +    G ++ +L+  +V   E+A   R
Sbjct: 310 MPGFTQWSMYPLLWENMGLAYPDLIEKLVGLAEEAFAKR 348


>gi|229820087|ref|YP_002881613.1| D-alanine/D-alanine ligase [Beutenbergia cavernae DSM 12333]
 gi|229566000|gb|ACQ79851.1| D-alanine/D-alanine ligase [Beutenbergia cavernae DSM 12333]
          Length = 372

 Score =  297 bits (762), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 96/363 (26%), Positives = 153/363 (42%), Gaps = 67/363 (18%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           +A++ GG S E  VS ++      A++   + V  + + RS   VLA             
Sbjct: 8   VAIVFGGRSGEHAVSAATAAGVLGAIDRGKYDVVPVGITRSGEWVLAADDAGALEIRDGH 67

Query: 49  -----------------------------------LKPDLAFNVLHGNFGEDGLVQAILE 73
                                                 D+   +LHG FGEDG +Q +LE
Sbjct: 68  VPEVDATGDGRLLVPFGSGPAQLVVLSPGAPPNELAGVDVVLPLLHGPFGEDGTIQGMLE 127

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--------DSQHLIS 125
           L  +PY  SG+LASA  MDK   K V++  G+PV P  ++             D    + 
Sbjct: 128 LAGVPYVGSGVLASAAGMDKHYMKVVLAGAGLPVGPYTVLTPSAWRRDRAACLDQVASLG 187

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            P  +KP + GSS+GI  ++    +   +    +  H  ++++E  + G E+   V+   
Sbjct: 188 LPVFVKPARAGSSIGITRVESLDRLVEAI--EEAQRHDPKVIVEAAITGREIEVAVLEGR 245

Query: 186 SLDVTEIAVP--------KSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
             +     +P        +  FY YE KY  S       PA +P  +  E +RLA  A  
Sbjct: 246 GDEPPRTTMPGEIVVTNAEHGFYDYEAKYFDSAGVDLRCPADLPPGVADEARRLAAEAFD 305

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           A+GC G++R DF + P    +   EIN  PG TP S+FP +   +G ++ EL+  +++ A
Sbjct: 306 ALGCEGLARVDFFYTPS-GTLVVNEINTMPGFTPFSMFPLLWERSGVAYPELIDELLQLA 364

Query: 297 SCL 299
              
Sbjct: 365 LAR 367


>gi|119961736|ref|YP_948207.1| D-alanyl-alanine synthetase A [Arthrobacter aurescens TC1]
 gi|190359109|sp|A1R7J5|DDL_ARTAT RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|119948595|gb|ABM07506.1| D-alanine--D-alanine ligase [Arthrobacter aurescens TC1]
          Length = 378

 Score =  297 bits (762), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 99/363 (27%), Positives = 156/363 (42%), Gaps = 66/363 (18%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50
           +A+L GG SSE  VS  +      A++   ++V  I + +S   VLA             
Sbjct: 15  VAILFGGRSSEHAVSCVTAAGVMGAIDKNKYEVIPIGIAKSGQWVLASGDTSEWSLSSAA 74

Query: 51  ------------------------------------PDLAFNVLHGNFGEDGLVQAILEL 74
                                                D+ F +LHG +GEDG +Q +LEL
Sbjct: 75  LPEVAPSGRTVTLAEVGGEHQLIVTEPNAVPQELGSVDVVFPLLHGPWGEDGTIQGLLEL 134

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ--------HLISP 126
            +  Y  +G+LASA+ MDK   K V  S G+ V P + V      +           +  
Sbjct: 135 SDTRYVGAGVLASAVGMDKHFMKVVFESAGLSVGPYVAVTDREWSTDAEAVRKRVDKLGF 194

Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186
           P  +KP + GSS+GI  +   +   LD     +  H  +L+IE  + G E+ C V+    
Sbjct: 195 PVFVKPARAGSSMGISKVDSME--GLDAAIDEARRHDLKLVIEAGIVGREIECAVLQGRG 252

Query: 187 LDV--------TEIAVPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
            D           +AV +  FY +  KY     +    PA +P +    V+ LA +A  A
Sbjct: 253 TDAPRTSMPGEIAVAVGEHQFYDFAAKYVEDGAAALSCPADMPDEAIARVRELAAVAFDA 312

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           +G  G+SR DF + P   ++   EIN  PG TP S++P+M A +G ++ +L+  ++  A 
Sbjct: 313 VGAEGLSRVDFFYTPA-GELIINEINTMPGFTPKSMYPQMWAASGLAYGDLIDELIHLAL 371

Query: 298 CLR 300
             +
Sbjct: 372 TRK 374


>gi|210614784|ref|ZP_03290313.1| hypothetical protein CLONEX_02527 [Clostridium nexile DSM 1787]
 gi|210150553|gb|EEA81562.1| hypothetical protein CLONEX_02527 [Clostridium nexile DSM 1787]
          Length = 351

 Score =  297 bits (762), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 102/350 (29%), Positives = 169/350 (48%), Gaps = 55/350 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------------------- 38
           + VL GG+S+ER+VSL+SG      L + G +   +DV                      
Sbjct: 3   IVVLAGGLSTERDVSLTSGAGICRTLRENGHQAFLLDVFLGFPYDSDKLEEVFTLPNAGL 62

Query: 39  -----DRSVGLVLAHLKP---------------------DLAFNVLHGNFGEDGLVQAIL 72
                 ++    LA +K                      D+ F  LHG+ GE+G +QA  
Sbjct: 63  EIADGIKTTEPDLAAIKASREDQSDCFLGPNVIDICRLADIVFMGLHGDVGENGKLQATF 122

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD---SQHLISPPYV 129
           ++L I YT    L SAL+MDK  +KQ+ +  GVP      + +   D   S   ++ P V
Sbjct: 123 DILGIKYTGPNYLGSALAMDKGVTKQIFTMAGVPTPLGTNLTKDRKDTALSDLGLTLPVV 182

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           +KP  GGSS+G+ ++    +    +   +S+ + D+++IE Y+ G E   G++   +L V
Sbjct: 183 VKPCSGGSSIGVYIVDTMDAYKEAV--ENSFRYEDEIVIEPYIKGREFAVGIIDGKALPV 240

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
            EI +PK+ F+ Y  KY    +  + PA I  ++ + +QR A LA +A+     SR+DFL
Sbjct: 241 IEI-IPKTGFFDYANKYQDGCTEEICPANIDEEVTERMQRAAELAFKALKLDIYSRADFL 299

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
            D  +  ++ LE+N  PGMT  S+ P+ A  AG ++ +L   +++ +   
Sbjct: 300 LDE-NNDIYCLEVNSLPGMTAASLLPKEARAAGITYGDLCELIIQKSLAR 348


>gi|254450575|ref|ZP_05064012.1| D-alanine--D-alanine ligase [Octadecabacter antarcticus 238]
 gi|198264981|gb|EDY89251.1| D-alanine--D-alanine ligase [Octadecabacter antarcticus 238]
          Length = 270

 Score =  297 bits (762), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 120/276 (43%), Positives = 169/276 (61%), Gaps = 9/276 (3%)

Query: 27  EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
             AGF V +ID    +   L   KPD  FN LHG + EDG+VQ +LE L IPYTHSG+LA
Sbjct: 2   RTAGFDVVEIDAGVDLVERLKLAKPDAVFNALHGRWCEDGVVQGVLEWLRIPYTHSGVLA 61

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           SA +MDK ++K +  + G+P   S+L ++  +++ H++ PPYV+KP   GSS+GI ++ +
Sbjct: 62  SATAMDKQKTKDIYRAHGLPFVESVLASKSQIEAAHVLPPPYVVKPYDEGSSVGIYMVME 121

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
             S P     + + +  D +++E Y  G ELT  V+G  +L VT+I V    +Y Y  KY
Sbjct: 122 GDSPP-----TLAADLPDLMMVETYAPGRELTTAVLGTRALTVTDIVV--DGWYDYASKY 174

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR--KVFWLEINV 264
               S HV+PA +P DI++     A  AH A+GCRG+SR+D+ +D       +  LE N 
Sbjct: 175 EVDGSIHVIPANLPDDIFQACMDYAVRAHDALGCRGLSRTDYRWDESRGLDGLILLETNT 234

Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           QPGMTP S+ PE AA  G SF +L+ WM+EDASC R
Sbjct: 235 QPGMTPTSLAPEQAASCGISFPDLMTWMIEDASCNR 270


>gi|312867261|ref|ZP_07727471.1| D-ala D-ala ligase N-terminal domain protein [Streptococcus
           parasanguinis F0405]
 gi|311097390|gb|EFQ55624.1| D-ala D-ala ligase N-terminal domain protein [Streptococcus
           parasanguinis F0405]
          Length = 348

 Score =  297 bits (762), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 93/330 (28%), Positives = 159/330 (48%), Gaps = 41/330 (12%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQ--------------------------- 35
           +L GG S+EREVS+ S ++   A++   F V                             
Sbjct: 8   LLYGGRSAEREVSVLSAESVMRAIDYQAFSVQTYFITQSGDFIQTQAFEEKPADDEKLMT 67

Query: 36  ---IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
              +D  + V     + +  + F VLHG  GEDG +Q  LE+L++PY   GILAS+++MD
Sbjct: 68  NDTVDWSKKVAPSAIYKEGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCGILASSVAMD 127

Query: 93  KMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIKPLKGGSSLGIIVIKK 146
           K+ +K+V+ S  +P  P + V       + +      +S P   KP   GSS+GI   + 
Sbjct: 128 KITTKRVLESAVIPQVPYVAVVEGDDVDEKIATIEATLSYPVFTKPSNMGSSVGISKAEN 187

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYEL 204
              +   L    ++ +  ++L+EQ V+  E+  G++G+  +  T     V    FY Y+ 
Sbjct: 188 QTELRTAL--ELAFKYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDYDA 245

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           KY     T  +PA++  ++ K ++  A  A +AIG  G++R DF +     ++F  E+N 
Sbjct: 246 KYIDNKITMAIPAQLDPEVVKTMRTNAEKAFRAIGGLGLARCDFFYTDK-GEIFLNELNT 304

Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            PG T  S++P +    G ++ +L+  +VE
Sbjct: 305 MPGFTQWSMYPLLWDNMGLNYTDLITKLVE 334


>gi|222159803|gb|ACM47279.1| D-Ala:D-Ala ligase Ddl [Enterococcus avium]
          Length = 359

 Score =  297 bits (762), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 86/342 (25%), Positives = 156/342 (45%), Gaps = 51/342 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLA------------- 47
           + +L GG S E +V++ S  +  SA+    ++V  I +D++   V               
Sbjct: 8   IILLYGGKSPEHDVAILSAFSVISAVYFDYYQVQLIYIDKTGQWVKGPLLTEAPETDETL 67

Query: 48  ----------------------HLKPD--LAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                  +K D  + F VLHG  GEDG +Q  LE L++PY  +G
Sbjct: 68  RLTWDPTGNEVEGFSGKVIAPGDIKEDNAIVFPVLHGPNGEDGTIQGFLETLDMPYVGAG 127

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLK 134
           ++ SA +MDK+ +K ++ + G+P  P + V +              +  +  P  +KP  
Sbjct: 128 VMTSACAMDKIMTKYILQAAGIPQVPYVPVLKNQWKENPKQIFDKCEGTLLYPMFVKPAN 187

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI-- 192
            GSS+GI   +  + +   L +  ++ +  + L+EQ +D  E+   V+G+  +  T    
Sbjct: 188 MGSSVGISRAENREELQNALQE--AYRYDSRALVEQGIDAREIEVAVLGNDDVRTTLPGE 245

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            V +  FY Y  KY +      +PA +P D+ ++ +  A  A+  +G  G+SR DF    
Sbjct: 246 VVKEEAFYDYNAKYINNTIQMAIPADVPEDVMQKARDFAKSAYPMLGGSGLSRCDFFLTN 305

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
              ++F  E+N  PG T  S++P +    G  + +L+  +++
Sbjct: 306 K-NELFLNELNTMPGFTEFSMYPLLWENMGLKYSDLIEELIQ 346


>gi|109240375|dbj|BAE96111.1| D-Ala:D-Ala ligase [Enterococcus raffinosus]
          Length = 359

 Score =  297 bits (762), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 87/342 (25%), Positives = 155/342 (45%), Gaps = 51/342 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLA------------- 47
           + +L GG S E +V++ S  +  SA+    ++V  I +D++   V               
Sbjct: 8   IILLYGGKSPEHDVAILSAFSVISAVYFDYYQVQLIYIDKTGQWVKGPLLTEAPETDETL 67

Query: 48  ----------------------HLKPD--LAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                  +K D  + F VLHG  GEDG +Q  LE L++PY  +G
Sbjct: 68  RLTWDPTGHEVEGFSGKVIAPGDIKEDNAIVFPVLHGPNGEDGTIQGFLETLDMPYVGAG 127

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLK 134
           ++ SA +MDK+ +K ++ + G+P  P + V +              +  +  P  IKP  
Sbjct: 128 VMTSACAMDKIMTKYILQAAGIPQVPYVPVLKNQWKENPKQIFDKCEGTLLYPMFIKPAN 187

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA- 193
            GSS+GI   +  + +   L +  ++ +  + L+EQ +D  E+   V+G+  +  T    
Sbjct: 188 MGSSVGITRAENREELQNALQE--AYRYDSRALVEQGIDAREIEVAVLGNDDVRTTLPGE 245

Query: 194 -VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            V +  FY Y  KY        +PA IP ++ ++ +  A  A+  +G  G+SR DF    
Sbjct: 246 IVKEEAFYDYNAKYIDNTIQMAIPANIPEEVMQKARDYAKSAYTMLGGSGLSRIDFFLTN 305

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
              ++F  E+N  PG T  S++P +    G  + +L+  +++
Sbjct: 306 K-NELFLNELNTMPGFTEFSMYPLLWENMGLKYGDLIEELIQ 346


>gi|254671165|emb|CBA08255.1| D-alanine--D-alanine ligase B [Neisseria meningitidis alpha153]
          Length = 304

 Score =  297 bits (761), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 105/299 (35%), Positives = 157/299 (52%), Gaps = 7/299 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSERE+SL SG A  +AL+  G      D   +    L       AFN+LHG
Sbjct: 7   VAVLMGGFSSEREISLDSGTAILNALKSKGIDAYAFDPKETPLSELKAQGFQTAFNILHG 66

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--M 118
            +GEDG VQ  LELL IPYT SG+ ASA+ MDK R K +  + G+PV    +++  T   
Sbjct: 67  TYGEDGAVQGALELLGIPYTGSGVAASAIGMDKYRCKLIWQALGLPVPEFAVLHDDTDFD 126

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
             +  +  P  +KP   GSS+G++ +K    +    +     +   +++ E+++ G E +
Sbjct: 127 AVEEKLGLPMFVKPAAEGSSVGVVKVKGKGRLKS--VYEELKHLQGEIIAERFIGGGEYS 184

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQA 237
           C V+    L    I +P ++FY YE KY+  ++ +  P   +       ++ LA    QA
Sbjct: 185 CPVLNGKGLPGIHI-IPATEFYDYEAKYNRDDTIYQCPSEDLTEAEESLMRELAVRGAQA 243

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           IG  G  R DF       K++ LEIN  PGMT  S+ P+ AA  G  F +L + +++ A
Sbjct: 244 IGAEGCVRVDF-LKDTDGKLYLLEINTLPGMTGHSLVPKSAAVTGVGFADLCIEILKTA 301


>gi|111023466|ref|YP_706438.1| D-alanyl-alanine synthetase A [Rhodococcus jostii RHA1]
 gi|123339682|sp|Q0S2F6|DDL_RHOSR RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|110822996|gb|ABG98280.1| D-alanine--D-alanine ligase [Rhodococcus jostii RHA1]
          Length = 368

 Score =  297 bits (761), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 97/360 (26%), Positives = 159/360 (44%), Gaps = 65/360 (18%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +AV+ GG S+E  VS  S  +    L+   ++V  I +      VL    P         
Sbjct: 8   VAVIFGGRSNEHSVSCVSAGSVLRNLDPERYEVVPIGITTEGSWVLGSTDPETLSIRGRA 67

Query: 52  --------------------------------------DLAFNVLHGNFGEDGLVQAILE 73
                                                 D+ F VLHG +GEDG +Q +LE
Sbjct: 68  LPSVDADGSALALTADPTRSGDLVALDDGEAGKILASVDVVFPVLHGAYGEDGTIQGLLE 127

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM----DSQHLISPPYV 129
           L  +PY   G+LASA  MDK  +K+++++ G+P+   +++   T     + +  +  P  
Sbjct: 128 LAGVPYVGPGVLASAAGMDKEFTKKLLAAEGLPIGFQVVLRPGTATLTDEQKSRLHLPVF 187

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM----GDA 185
           +KP +GGSS+GI  +   +   LD   + +  H  ++++E  + G E+ CGV+    GD 
Sbjct: 188 VKPARGGSSIGITRV--AEWAALDDAIAHARLHDPKVIVESGIIGREVECGVLEFPDGDV 245

Query: 186 SLDVT-EIAVPKS-----DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
              V  EI +P+       FY ++ KY        +PAK+   +  E++ LA  A  A+ 
Sbjct: 246 RASVIAEIRMPEGAGDDEAFYDFDSKYLDDVCEFDVPAKLDESVSDEIRELAVRAFSALD 305

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
           C+G++R DF            EIN  PG T +S++P M    G  +  L+  +V+ A   
Sbjct: 306 CQGLARVDFFVTEDG--PVINEINTMPGFTSISMYPRMWGAVGVDYGTLVSTLVDTALAR 363


>gi|323352703|ref|ZP_08087673.1| D-alanine-D-alanine ligase [Streptococcus sanguinis VMC66]
 gi|322121739|gb|EFX93485.1| D-alanine-D-alanine ligase [Streptococcus sanguinis VMC66]
          Length = 353

 Score =  297 bits (761), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 96/339 (28%), Positives = 160/339 (47%), Gaps = 44/339 (12%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL---------------- 46
           +L GG S+EREVS+ S ++   A+    F V    + +    +                 
Sbjct: 13  LLYGGRSAEREVSVLSAESVMRAVNYDRFSVKTYFITKDGDFIQTQEFEAKPAADEKLMT 72

Query: 47  -------AHLKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
                    +KP        + F VLHG  GEDG +Q  LE+L++PY    IL+S+L+MD
Sbjct: 73  NATVDMSQKIKPSDIYEDGTVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNILSSSLAMD 132

Query: 93  KMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           K+ +K+V+ S G+   P + +           + +  ++ P   KP   GSS+GI   + 
Sbjct: 133 KITTKRVLESAGIAQVPYVALVDGEDLEQKIQEIEEKLTYPVFTKPSNMGSSVGISKSEN 192

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYEL 204
              +   L    ++ +  ++L+EQ V   E+  G++G+  +  T     V    FY YE 
Sbjct: 193 QAELRASLDL--AFKYDSRVLVEQGVTAREIEVGLLGNVDVKSTLPGEVVKDVAFYDYEA 250

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           KY     T  +PAKIP ++   +++ A  A +A+G  G+SR DF +     +VF  E+N 
Sbjct: 251 KYIDNKITMDIPAKIPDEVVSLMRQNAEAAFRALGGLGLSRCDFFY-AEDGQVFLNELNT 309

Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMV---EDASCLR 300
            PG T  S++P +    G ++ +L+  +V   E+A   R
Sbjct: 310 MPGFTQWSMYPLLWENMGLAYPDLIEKLVGLAEEAFAKR 348


>gi|269957072|ref|YP_003326861.1| D-alanine/D-alanine ligase [Xylanimonas cellulosilytica DSM 15894]
 gi|269305753|gb|ACZ31303.1| D-alanine/D-alanine ligase [Xylanimonas cellulosilytica DSM 15894]
          Length = 377

 Score =  297 bits (761), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 97/360 (26%), Positives = 160/360 (44%), Gaps = 67/360 (18%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +A+L GG S E  +S ++      A++   + V  + + R    V+A  +P         
Sbjct: 13  VALLFGGRSGEHAISAATAAGVLRAIDRDVYDVVPVGITRDGRWVVAADEPERWEITDGR 72

Query: 52  --------------------------------------DLAFNVLHGNFGEDGLVQAILE 73
                                                 D+ F +LHG FGEDG +Q +LE
Sbjct: 73  LPEVTSDDGAEVVLSLTAGERTLRVLEPGQVPGVLGEVDVVFPLLHGPFGEDGTLQGLLE 132

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--------SQHLIS 125
           L ++ Y  +G+LASA+ MDK   K V+   G+PV P  ++     +        +   + 
Sbjct: 133 LADVHYVGAGVLASAVGMDKHFMKLVLEGQGLPVGPYTVILPRDWETRREEATAAVARLG 192

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            P  +KP + GSSLGI  +     +P  + ++    H  ++++EQ ++G E+ C V+G  
Sbjct: 193 LPVFVKPARAGSSLGITRVDDLADLPAAVAEAQ--RHDPKVIVEQGIEGREVECAVLGGR 250

Query: 186 S-LD-----VTEIAVPKS--DFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQ 236
           S L        EI V      FY +E KY   ++  +  PA +P  +  +V+ +A     
Sbjct: 251 SGLPARASLPGEIVVDHGAHAFYDFEAKYLDESAVQLRCPADLPDKVVAQVRSIAVRTFD 310

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           A+G  G+SR D    P  R V   EIN  PG TP S++P M    G ++ +L+  +++ A
Sbjct: 311 AVGAEGLSRVDVFVTPDER-VIVNEINTMPGFTPFSMYPRMWEATGLTYPQLIDELIQLA 369


>gi|297571651|ref|YP_003697425.1| D-alanine/D-alanine ligase [Arcanobacterium haemolyticum DSM 20595]
 gi|296931998|gb|ADH92806.1| D-alanine/D-alanine ligase [Arcanobacterium haemolyticum DSM 20595]
          Length = 372

 Score =  297 bits (761), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 98/360 (27%), Positives = 157/360 (43%), Gaps = 67/360 (18%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           +AV+ GG S E  +S+++  A   +L+   + V  I + R    V               
Sbjct: 8   VAVIYGGASGEHSISIATAGAVMRSLDPERYDVLPIGITRDGAWVPGATDASQLTLEAGL 67

Query: 50  ------------------------------------KPDLAFNVLHGNFGEDGLVQAILE 73
                                                 D+ F +LHG FGEDG +Q +LE
Sbjct: 68  LEVEAAPEAVTLPAGDGTQSLVRYDRENASDLALLGNVDVVFPLLHGPFGEDGTIQGMLE 127

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ--------HLIS 125
           +  +PY   G+ ASA  MDK   K V+ + G+PV P ++        +          +S
Sbjct: 128 MAGVPYVGCGVFASAAGMDKHYMKVVLEAAGLPVAPYVVATARKWRDERDQVLADVAKMS 187

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            P  +KP + GSSLGI  + + + +P  +  +    H  ++LIEQ V+G E+ C V+G  
Sbjct: 188 FPVYVKPARAGSSLGITRVARIEDVPAAVAAAQI--HDPKVLIEQGVNGREIECAVLGGR 245

Query: 186 SLDVTEIAV--------PKSDFYSYELKYSSLNS-THVLPAKIPLDIYKEVQRLAFLAHQ 236
                  +V        P+  FY +E KY   +  T  +PA +P +I ++++  A     
Sbjct: 246 GDTTPRASVVGEVLVNLPEDGFYDFEHKYLDTDGLTMSIPANVPEEISEKIRAQAIATFD 305

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           A GC G+SR DF   P   + F +E+N  PG TP S++P +    G  + +LL  ++  A
Sbjct: 306 AFGCEGMSRVDFFLTP-EGETFVIELNTIPGFTPFSMYPVLWENTGLPYSQLLDELIALA 364


>gi|22536931|ref|NP_687782.1| D-alanyl-alanine synthetase A [Streptococcus agalactiae 2603V/R]
 gi|25010842|ref|NP_735237.1| D-alanyl-alanine synthetase A [Streptococcus agalactiae NEM316]
 gi|76787870|ref|YP_329514.1| D-alanyl-alanine synthetase A [Streptococcus agalactiae A909]
 gi|76798442|ref|ZP_00780681.1| D-alanine--D-alanine ligase (D-alanylalanine
           synthetase)(D-Ala-D-Ala ligase) [Streptococcus
           agalactiae 18RS21]
 gi|77406739|ref|ZP_00783776.1| D-alanine--D-alanine ligase [Streptococcus agalactiae H36B]
 gi|77409084|ref|ZP_00785800.1| D-alanine--D-alanine ligase [Streptococcus agalactiae COH1]
 gi|77414685|ref|ZP_00790819.1| D-alanine--D-alanine ligase [Streptococcus agalactiae 515]
 gi|39930893|sp|Q8E0G6|DDL_STRA5 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|39930895|sp|Q8E640|DDL_STRA3 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|123602002|sp|Q3K1T9|DDL_STRA1 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|22533783|gb|AAM99654.1|AE014226_14 D-alanine--D-alanine ligase [Streptococcus agalactiae 2603V/R]
 gi|23095221|emb|CAD46431.1| Unknown [Streptococcus agalactiae NEM316]
 gi|76562927|gb|ABA45511.1| D-alanine--D-alanine ligase [Streptococcus agalactiae A909]
 gi|76586204|gb|EAO62723.1| D-alanine--D-alanine ligase (D-alanylalanine
           synthetase)(D-Ala-D-Ala ligase) [Streptococcus
           agalactiae 18RS21]
 gi|77159263|gb|EAO70440.1| D-alanine--D-alanine ligase [Streptococcus agalactiae 515]
 gi|77172301|gb|EAO75454.1| D-alanine--D-alanine ligase [Streptococcus agalactiae COH1]
 gi|77174644|gb|EAO77476.1| D-alanine--D-alanine ligase [Streptococcus agalactiae H36B]
          Length = 348

 Score =  297 bits (761), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 96/332 (28%), Positives = 156/332 (46%), Gaps = 41/332 (12%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQ--------------------------- 35
           +L GG S+EREVS+ S ++   A+    F V                             
Sbjct: 8   LLYGGRSAEREVSVLSAESVMRAINYDKFFVKTYFITQVGQFIKTQEFDEMPSSDEKLMT 67

Query: 36  ---IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
              +D+D+ V     +    + F VLHG  GEDG +Q  LE+L +PY  + IL+S+++MD
Sbjct: 68  NQTVDLDKMVRPSDIYDDNAIVFPVLHGPMGEDGSIQGFLEVLRMPYVGTNILSSSVAMD 127

Query: 93  KMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           K+ +KQV+++ GVP            +      S   +S P  +KP   GSS+GI     
Sbjct: 128 KITTKQVLATVGVPQVAYQTYFEGDDLEHAIKLSLETLSFPIFVKPANMGSSVGISKATD 187

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYEL 204
           + S+   +  +    +  ++LIEQ V   E+  G++G+  +  T     V   DFY Y+ 
Sbjct: 188 ESSLRSAIDLAL--KYDSRILIEQGVTAREIEVGILGNNDVKTTFPGEVVKDVDFYDYDA 245

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           KY     T  +PAK+     + +++ A  A +AIG  G+SR DF       ++F  E+N 
Sbjct: 246 KYIDNKITMDIPAKVDEATMEAMRQYASKAFKAIGACGLSRCDFFLTK-DGQIFLNELNT 304

Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            PG T  S++P +    G ++ +L+  +V  A
Sbjct: 305 MPGFTQWSMYPLLWENMGLTYSDLIEKLVMLA 336


>gi|117924060|ref|YP_864677.1| D-alanine--D-alanine ligase [Magnetococcus sp. MC-1]
 gi|166198490|sp|A0L5M8|DDL_MAGSM RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|117607816|gb|ABK43271.1| D-alanine--D-alanine ligase [Magnetococcus sp. MC-1]
          Length = 310

 Score =  297 bits (761), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 102/304 (33%), Positives = 164/304 (53%), Gaps = 12/304 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VL GG+S EREVSL SG+A   AL+  G++V  IDVDR +  VL     ++A   LHG
Sbjct: 8   IGVLYGGLSEEREVSLRSGQALFVALQSLGYQVVAIDVDRHITKVLEREGIEVAVLALHG 67

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LE + IPYT   + ASA+ MDK  SK++  S G+P    I +     ++
Sbjct: 68  PMGEDGTIQGLLEFMGIPYTGPNVAASAICMDKGLSKRLFHSEGLPTPAWIELAGDHEEA 127

Query: 121 QHLIS-------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
             L+            +KPL  GSS+GI        +   + ++ S +H  + ++E+ ++
Sbjct: 128 DELVDHFLGDFHGAAFVKPLDSGSSVGISRAVGKDELIRGVAKALSVSH--RCMVERAIE 185

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAF 232
           G ELT  ++   +  + EI VP   FY Y+ KY++  + +++PA  +     + V ++  
Sbjct: 186 GRELTLSILDGEAFPLIEI-VPIDGFYDYDHKYTAGRTNYLVPAPNLDDKSLEAVVKIGL 244

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
            A+   GCRG+ R+DF+ D      + LE+N  PGMT +S+ P+ A   G    +L   +
Sbjct: 245 AAYHITGCRGLVRADFILDG-EGTPWLLELNTIPGMTELSLAPKAAHAVGIEMPQLAERI 303

Query: 293 VEDA 296
           ++ A
Sbjct: 304 LQGA 307


>gi|269794439|ref|YP_003313894.1| D-alanine--D-alanine ligase [Sanguibacter keddieii DSM 10542]
 gi|269096624|gb|ACZ21060.1| D-alanine--D-alanine ligase [Sanguibacter keddieii DSM 10542]
          Length = 400

 Score =  297 bits (761), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 98/359 (27%), Positives = 155/359 (43%), Gaps = 66/359 (18%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD-------- 52
           + +L GG S E  +S ++      A++   + V  + + R+   VL    PD        
Sbjct: 37  VVLLFGGRSGEHVISCATAAGVMRAIDRDRYDVVPVGITRTGQWVLVEDDPDRWAITDGR 96

Query: 53  --------------------------------------LAFNVLHGNFGEDGLVQAILEL 74
                                                 + F +LHG FGEDG +Q +LEL
Sbjct: 97  LPEVDATGTEVLLPLAVGQTALRVLEAGALPRVLGDVDVVFPLLHGPFGEDGTLQGMLEL 156

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL--------ISP 126
            ++ Y  +G+LASA+ MDK   K V++  G+PV P  +V     D            +  
Sbjct: 157 ADVRYVGAGVLASAVGMDKHFMKLVLAGQGLPVGPYTVVPPGEWDRDAEAVTARVAGLGL 216

Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186
           P  +KP + GSSLGI  +     +P  +  + +  H  ++++E  + G E+ C V+G   
Sbjct: 217 PVFVKPARAGSSLGISKVDDLADLPAAV--AEARRHDPKVIVEAGIVGREIECAVLGGRR 274

Query: 187 LD------VTEIAVPKSD--FYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQA 237
            +        EI V  +   FY +E KY S  S  +  PA +  ++  EVQ +A    +A
Sbjct: 275 GERARASLPGEIQVTDTTHAFYDFEAKYLSEQSVELTCPADLSPELVAEVQDVAVRTFEA 334

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +   G+SR D        +V   EIN  PG TP S++P M   +G  + EL+  +VE A
Sbjct: 335 VSGEGLSRVDVFVTEA-GEVVVNEINTMPGFTPFSMYPRMWDRSGLPYAELITELVELA 392


>gi|260654529|ref|ZP_05860019.1| D-alanine--D-alanine ligase B [Jonquetella anthropi E3_33 E1]
 gi|260630806|gb|EEX49000.1| D-alanine--D-alanine ligase B [Jonquetella anthropi E3_33 E1]
          Length = 321

 Score =  297 bits (761), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 107/308 (34%), Positives = 153/308 (49%), Gaps = 15/308 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLA-HLKPDLAFNVLH 59
           + VL GG S EREVSL SG+A   AL+ AG++   ID+     +  A     DL F VLH
Sbjct: 7   IVVLYGGNSPEREVSLVSGQAVEKALKSAGYETELIDLTGPEKVFEALKTPCDLFFPVLH 66

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--FT 117
           G++GEDG +QA L+L   PY  SG LAS L MDK  SK +    G+     +LV +   T
Sbjct: 67  GSWGEDGRLQAALDLSGRPYVGSGPLASGLCMDKWASKALFDRAGLHTPKGVLVRQKDGT 126

Query: 118 MDSQHLIS-----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
            D   L+         ++KP  GGS++   V+   + +   L  +     G   L+E+++
Sbjct: 127 GDLPGLLRALERYGKLIVKPNCGGSTVATSVVSCSEELLPALNAAWEQKSGG-ALVEEFI 185

Query: 173 DGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
            G ELT  +     G  +L   EI +P S FY Y+ KY+   S +  PA++  +  + + 
Sbjct: 186 PGRELTVAMWDSGSGPEALPAVEI-LPASGFYDYQAKYTDGASRYESPARLSGEEARALS 244

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
             A  A +A+G R   R+DF   P   +   LEIN  PGMT  S+ P  A  AG    + 
Sbjct: 245 EAAVAAWRAVGLRDYGRADFRL-PPDGEPVLLEINTAPGMTSHSLVPMAAKSAGMELPDF 303

Query: 289 LLWMVEDA 296
           L  +   A
Sbjct: 304 LSRLARRA 311


>gi|323359683|ref|YP_004226079.1| D-alanine-D-alanine ligase [Microbacterium testaceum StLB037]
 gi|323276054|dbj|BAJ76199.1| D-alanine-D-alanine ligase [Microbacterium testaceum StLB037]
          Length = 361

 Score =  297 bits (761), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 101/356 (28%), Positives = 161/356 (45%), Gaps = 64/356 (17%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD-------- 52
           + VL GG SSE  +S ++      A++   F+V  + + R    VL    PD        
Sbjct: 6   VVVLFGGRSSEHSISSATAGGVLRAIDRDRFRVIPVGITRDGAFVLEDDDPDKFALIPEA 65

Query: 53  -------------------------------------LAFNVLHGNFGEDGLVQAILELL 75
                                                +   +LHG FGEDG VQ +LELL
Sbjct: 66  LPQVVDNGTRVRLPDSTLTREWTVTDAEGTWSLGDVDVVLPILHGRFGEDGTVQGLLELL 125

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ--------HLISPP 127
            IPY   G+L SA+ M+K  +KQV+ +  VPV P + V+R  +             +  P
Sbjct: 126 GIPYAGGGVLMSAIGMNKHVTKQVLRAANVPVVPWVAVSRADLARDRSLWERRIRALDLP 185

Query: 128 YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL 187
             +KP + GSS+G+  + + + +  D    +++     +L+E+ + G EL CGV+     
Sbjct: 186 VFVKPNEAGSSVGVTKVSRWEDL--DAALDTAFAEDGLVLVEKAIVGRELECGVLPGRDG 243

Query: 188 DVT------EIAVPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
                    EI V   +FY +E KY  +     V PA++      E+QR+A  A +AIG 
Sbjct: 244 GPVRVSVAGEIVVTGREFYDFEAKYLDAPGVDLVCPAELGDGELAEMQRIATQAFEAIGG 303

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +G++R DF       + F  E+N  PG TP+S+FP     +G S+ +L+  +++ A
Sbjct: 304 QGLARVDFF--STGTEFFVNEVNTMPGFTPISMFPTCWIASGLSYPDLISDLLDAA 357


>gi|302875906|ref|YP_003844539.1| D-alanine/D-alanine ligase [Clostridium cellulovorans 743B]
 gi|307689340|ref|ZP_07631786.1| D-alanyl-alanine synthetase A [Clostridium cellulovorans 743B]
 gi|302578763|gb|ADL52775.1| D-alanine/D-alanine ligase [Clostridium cellulovorans 743B]
          Length = 341

 Score =  297 bits (761), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 86/338 (25%), Positives = 161/338 (47%), Gaps = 44/338 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44
           +AV+ GG SSE ++SL+S     + ++   + V  I + +                    
Sbjct: 5   IAVIFGGQSSEYDISLASAAYVLNNIDKTKYGVYPIGISKEGLWYEYTGSIDKIEDGSWI 64

Query: 45  ------------VLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
                       VL + + D+ F +LHG  GEDG +Q + +LL +P   + +L+SAL MD
Sbjct: 65  NDEYYKIPDGERVLFNKEVDVVFPLLHGFCGEDGTIQGLCKLLRLPCVGASVLSSALCMD 124

Query: 93  KMRSKQVVSSCGVPVCPSILVNRFT---------MDSQHLISPPYVIKPLKGGSSLGIIV 143
           K  SK ++    + V P  ++                   +     +KP  GGSS+G+  
Sbjct: 125 KAYSKYILEDFNINVTPYEVIEEREYLNNKSSYKEKVIKKLGEEVFVKPSNGGSSVGVSK 184

Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV-----PKSD 198
           +K + S    +    ++ +  ++L+E+ +   E+   ++ D     T+I          +
Sbjct: 185 LKAEDSFE--VAIEKAFKYDKRVLVEKAIAAREIKVAIIEDGIELKTKIGEVVYKNSNKE 242

Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
           FY YE+KY+   +  ++PAK+  ++  +++ LA  A++ + CRG++R DF  D  + +++
Sbjct: 243 FYDYEVKYTEGMNELIVPAKLETEVMDKIEALALKAYKVLDCRGMARVDFFIDRYTSEIY 302

Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             EIN  PG T  S FP++   AG +  EL+  ++++A
Sbjct: 303 LNEINTIPGFTRFSSFPKLWEVAGVTPTELINILIKNA 340


>gi|241667465|ref|ZP_04755043.1| D-alanine--D-alanine ligase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254876012|ref|ZP_05248722.1| D-alanine-D-alanine ligase B [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254842033|gb|EET20447.1| D-alanine-D-alanine ligase B [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
          Length = 297

 Score =  297 bits (761), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 103/299 (34%), Positives = 161/299 (53%), Gaps = 8/299 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59
           + VL GG S EREVSL SGKA   +L + G+    +D   + + + L  L PD  F  LH
Sbjct: 6   IVVLYGGDSPEREVSLKSGKAVLDSLLNQGYDAVGLDASSKDLVVKLLELNPDKCFIALH 65

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G  GE+G V A+LELL I +T S + +  ++MDKM SK+++    +P   +  +    ++
Sbjct: 66  GEDGENGRVAALLELLGIKHTGSTMKSCVVTMDKMISKEILMHHRMPTPMAKFLTDRLVE 125

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
           +   IS P  +KP  GGSS+    +K  + +     Q+S      +++IEQ+V G E+T 
Sbjct: 126 ADE-ISFPVAVKPSSGGSSIATFKVKSFEELENAYQQASKH---GEVMIEQWVTGKEITV 181

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
            ++ +       I  P ++FY YE KYS   S +  P+ +      EV++LA  A+  +G
Sbjct: 182 AIVNNDVYSSVWIE-PLNEFYDYESKYS-GKSIYHAPSGLCEQKELEVRQLAKKAYDLLG 239

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           C+G +R DF++D      + +EIN  PGMT  S+ P+ AA  G  F   +  ++E A C
Sbjct: 240 CKGHARVDFIYDDK-GDFYIMEINSSPGMTENSLSPKSAAAEGIDFDSFVKSILEQAQC 297


>gi|319744789|gb|EFV97129.1| D-alanine-D-alanine ligase [Streptococcus agalactiae ATCC 13813]
          Length = 348

 Score =  297 bits (761), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 96/332 (28%), Positives = 156/332 (46%), Gaps = 41/332 (12%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQ--------------------------- 35
           +L GG S+EREVS+ S ++   A+    F V                             
Sbjct: 8   LLYGGRSAEREVSVLSAESVMRAINYDKFFVKTYFITQVGQFIKTQEFDEMPSSDEKLMT 67

Query: 36  ---IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
              +D+D+ V     +    + F VLHG  GEDG +Q  LE+L +PY  + IL+S+++MD
Sbjct: 68  NQTVDLDKMVRPSDIYDDDAIVFPVLHGPMGEDGSIQGFLEVLRMPYVGTNILSSSVAMD 127

Query: 93  KMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           K+ +KQV+++ GVP            +      S   +S P  +KP   GSS+GI     
Sbjct: 128 KITTKQVLATVGVPQVAYQTYFEGDNLEHAIKLSLETLSFPIFVKPANMGSSVGISKATD 187

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYEL 204
           + S+   +  +    +  ++LIEQ V   E+  G++G+  +  T     V   DFY Y+ 
Sbjct: 188 ESSLRSAIDLAL--KYDSRILIEQGVTAREIEVGILGNNDVKTTFPGEVVKDVDFYDYDA 245

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           KY     T  +PAK+     + +++ A  A +AIG  G+SR DF       ++F  E+N 
Sbjct: 246 KYIDNKITMDIPAKVDEATMEAMRQYASKAFKAIGACGLSRCDFFLTK-DGQIFLNELNT 304

Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            PG T  S++P +    G ++ +L+  +V  A
Sbjct: 305 MPGFTQWSMYPLLWENMGLTYSDLIEKLVMLA 336


>gi|319938752|ref|ZP_08013116.1| D-alanine-D-alanine ligase [Streptococcus anginosus 1_2_62CV]
 gi|319811802|gb|EFW08068.1| D-alanine-D-alanine ligase [Streptococcus anginosus 1_2_62CV]
          Length = 348

 Score =  297 bits (761), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 92/334 (27%), Positives = 158/334 (47%), Gaps = 41/334 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------------------- 40
           + +L GG S+ER+VS+ S ++   A+    F V    + +                    
Sbjct: 6   IILLYGGRSAERKVSVLSAESVMHAINYNKFFVKTYFITQAGDFIKTQEFSSKPADNEKL 65

Query: 41  ---SVGLVLAHLKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
                 +    +KP        + F VLHG  GEDG +Q  LE+L++PY    IL+S+++
Sbjct: 66  MTNDSVVESQKIKPSDIYEEGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNILSSSVA 125

Query: 91  MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIKPLKGGSSLGIIVI 144
           MDK+ +K+V++S G+P  P + V       + +      ++ P   KP   GSS+GI   
Sbjct: 126 MDKITTKRVLASAGIPQVPYVAVIEGENIDEKIAAVEANLTYPVFTKPSNMGSSVGISKS 185

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202
           +    +   L    ++ +  ++LIEQ V+  E+  G++ +  +  +     V    FY Y
Sbjct: 186 ENQDELRSAL--ELAFKYDSRVLIEQGVNAREIEVGLLENEGVKSSLPGEVVKDVAFYDY 243

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
           E KY     T  +PAK+  D+   +++ A  A  AIG  G++R DF +     ++F  E+
Sbjct: 244 EAKYIDNKITMDIPAKLSEDVIATMRQYAEKAFHAIGGVGLARCDFFYTDK-GEIFLNEL 302

Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           N  PG T  S++P +    G S+ +L+  +V  A
Sbjct: 303 NTMPGFTQWSMYPLLWENMGISYTDLIEKLVLLA 336


>gi|291541890|emb|CBL15000.1| D-alanine--D-alanine ligase [Ruminococcus bromii L2-63]
          Length = 355

 Score =  297 bits (761), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 104/345 (30%), Positives = 161/345 (46%), Gaps = 56/345 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID----------------------- 37
           + VL GG+S+EREVS+SSG   A AL   G +V  +D                       
Sbjct: 3   IVVLAGGLSTEREVSISSGTLVAEALRSKGHEVVLLDVFMGYEENICDIDALFKQNYSFT 62

Query: 38  ----VDRSVGLVLAHLK------------------------PDLAFNVLHGNFGEDGLVQ 69
               +   V   + ++K                         D+ F  LHG  GE+G +Q
Sbjct: 63  DGNSIGDDVENTITNIKEAKENRLDKTSRYIGRNVIEICAEADITFLALHGGEGENGQLQ 122

Query: 70  AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYV 129
           A L+L  I YT SG L SAL+M+K  +K V     +   PS  + +   D+      P +
Sbjct: 123 ATLDLFGIKYTGSGYLGSALAMNKGLTKSVFMQKNINT-PSGELYKNEKDALAWNMFPCI 181

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           +KP  GGSS+G+  ++        + ++  +   D++++EQ+V G E + G++G  +L  
Sbjct: 182 VKPCSGGSSVGVSKVENADQYKKAVKEALKYE--DEIVVEQFVTGREFSVGLIGGKALPP 239

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
            EIA PKS  Y Y  KY +  +    PA I  +  K+++  A  A++A+     +R DFL
Sbjct: 240 IEIA-PKSGMYDYAAKYQAGATVETCPADIDEETDKKLRDAATEAYEALHLESYARIDFL 298

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            D      + LE N  PGMTP S+ P+ AA  G S+ +L   ++E
Sbjct: 299 LDK-GGFTYCLEANTLPGMTPTSLLPQEAAVEGISYPDLCEKIIE 342


>gi|33416270|ref|NP_878016.1| vancomycin/teicoplanin A-type resistance protein VanA
           [Staphylococcus aureus]
 gi|121633839|ref|YP_976077.1| VanA protein [Enterococcus faecium]
 gi|124112006|ref|YP_001019035.1| VanA protein [Enterococcus faecium]
 gi|190606511|ref|YP_001974796.1| VanA protein [Enterococcus faecium]
 gi|197103117|ref|YP_002128399.1| D-alanine--D-lactate ligase [Enterococcus faecium]
 gi|256965577|ref|ZP_05569748.1| vancomycin/teicoplanin A-type resistance protein VanA [Enterococcus
           faecalis HIP11704]
 gi|257891272|ref|ZP_05670925.1| vancomycin/teicoplanin A-type resistance protein vanA [Enterococcus
           faecium 1,231,410]
 gi|293567293|ref|ZP_06678646.1| D-alanine-D-lactate ligase VanA [Enterococcus faecium E1071]
 gi|294617750|ref|ZP_06697368.1| vancomycin/teicoplanin A-type resistance protein VanA [Enterococcus
           faecium E1679]
 gi|305678707|ref|YP_003864126.1| VanA [Enterococcus faecalis]
 gi|313247847|ref|YP_004033009.1| vanomycin resistance [Enterococcus faecalis]
 gi|137441|sp|P25051|VANA_ENTFC RecName: Full=Vancomycin/teicoplanin A-type resistance protein
           VanA; AltName: Full=D-alanine--D-lactate ligase;
           AltName: Full=VanA ligase
 gi|21886742|gb|AAM77885.1|AF516335_5 D-Ala-D-Lac ligase [Enterococcus faecium]
 gi|43336|emb|CAA40215.1| VANA ligase [Enterococcus faecium]
 gi|155042|gb|AAA65956.1| vanA [Enterococcus faecium]
 gi|33390954|gb|AAQ17160.1| vancomycin/teicoplanin A-type resistance protein VanA
           [Staphylococcus aureus]
 gi|110556110|dbj|BAE98129.1| vanA [Enterococcus faecalis]
 gi|121490898|emb|CAL36534.1| VanA protein [Enterococcus faecium]
 gi|124012108|emb|CAL90940.1| VanA protein [Enterococcus faecium]
 gi|186886505|gb|ACC93633.1| VanA [Enterococcus faecium]
 gi|190350281|emb|CAP62631.1| VanA protein [Enterococcus faecium]
 gi|196158939|emb|CAP70014.1| VanA protein [Enterococcus faecium]
 gi|256956073|gb|EEU72705.1| vancomycin/teicoplanin A-type resistance protein VanA [Enterococcus
           faecalis HIP11704]
 gi|257827632|gb|EEV54258.1| vancomycin/teicoplanin A-type resistance protein vanA [Enterococcus
           faecium 1,231,410]
 gi|283481160|emb|CAZ67071.1| VanA protein [Enterococcus faecium]
 gi|291590001|gb|EFF21796.1| D-alanine-D-lactate ligase VanA [Enterococcus faecium E1071]
 gi|291595996|gb|EFF27271.1| vancomycin/teicoplanin A-type resistance protein VanA [Enterococcus
           faecium E1679]
 gi|304324958|gb|ADM24838.1| VanA [Enterococcus faecalis]
 gi|304325000|gb|ADM24879.1| VanA [Enterococcus faecalis]
 gi|304325042|gb|ADM24920.1| VanA [Enterococcus faecalis]
 gi|312837014|dbj|BAJ34900.1| vanomycin resistance [Enterococcus faecalis]
          Length = 343

 Score =  297 bits (761), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 86/335 (25%), Positives = 148/335 (44%), Gaps = 45/335 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +A+L GG S E +VS+ S    A+ +    ++   I + +S    +              
Sbjct: 6   VAILFGGCSEEHDVSVKSAIEIAANINKEKYEPLYIGITKSGVWKMCEKPCAEWENDNCY 65

Query: 52  --------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
                                     D+AF+ LHG  GEDG +Q + EL  IP+    I 
Sbjct: 66  SAVLSPDKKMHGLLVKKNHEYEINHVDVAFSALHGKSGEDGSIQGLFELSGIPFVGCDIQ 125

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145
           +SA+ MDK  +  V  + G+      ++N+         + P  +KP + GSS G+  + 
Sbjct: 126 SSAICMDKSLTYIVAKNAGIATPAFWVINKDDRPVAATFTYPVFVKPARSGSSFGVKKVN 185

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD-ASLDVTEIAVPKSDFYSY-- 202
               +  D    S+  +  ++LIEQ V G E+ C V+G+ A+L V E+   +  +  +  
Sbjct: 186 SADEL--DYAIESARQYDSKILIEQAVSGCEVGCAVLGNSAALVVGEVDQIRLQYGIFRI 243

Query: 203 ----ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
               E +  S N+   +PA +  +    +Q  A   ++A+GCRG++R D      + ++ 
Sbjct: 244 HQEVEPEKGSENAVITVPADLSAEERGRIQETAKKIYKALGCRGLARVDMFL-QDNGRIV 302

Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
             E+N  PG T  S +P M A AG +  EL+  ++
Sbjct: 303 LNEVNTLPGFTSYSRYPRMMAAAGIALPELIDRLI 337


>gi|262283026|ref|ZP_06060793.1| D-alanyl-alanine synthetase A [Streptococcus sp. 2_1_36FAA]
 gi|262261278|gb|EEY79977.1| D-alanyl-alanine synthetase A [Streptococcus sp. 2_1_36FAA]
          Length = 348

 Score =  297 bits (761), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 97/339 (28%), Positives = 162/339 (47%), Gaps = 44/339 (12%)

Query: 3   VLMGGISSEREVSLSSGKACASALE------------DAGF-------KVSQI------- 36
           +L GG S+EREVS+ S ++   A+               G+       +   +       
Sbjct: 8   LLYGGRSAEREVSVLSAESVMRAINYDLFSVKTYFITKEGYFIKTQEFEAKPVADEKLMT 67

Query: 37  ----DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
               D+ R +     +    + F VLHG  GEDG +Q  LE+L++PY    IL+S+L+MD
Sbjct: 68  NATVDMSRKIKPSDIYEAGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNILSSSLAMD 127

Query: 93  KMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           K+ +K+V+ S G+   P + V           + +  +S P   KP   GSS+GI   K 
Sbjct: 128 KITTKRVLESAGIAQVPYVAVVDGEDLEQKIQEIEEKLSYPVFTKPSNMGSSVGIS--KS 185

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYEL 204
           D    L +    ++ +  ++L+EQ V   E+  G++G+A +  +     V    FY Y+ 
Sbjct: 186 DNQEELRVSLELAFKYDSRVLVEQGVTAREIEVGLLGNADVKSSLPGEVVKDVAFYDYQA 245

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           KY     T  +PA++P  +   +++ A  A +AIG  G+SR DF +     +VF  E+N 
Sbjct: 246 KYIDNKITMAIPAQLPEGVVNTMRQNAETAFRAIGGLGLSRCDFFYTE-DGQVFLNELNT 304

Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMV---EDASCLR 300
            PG T  S++P +    G ++ +L+  +V   E+A   R
Sbjct: 305 MPGFTQWSMYPLLWENMGLAYPDLIEKLVRLAEEAFAKR 343


>gi|257880772|ref|ZP_05660425.1| D-ala D-ala ligase [Enterococcus faecium 1,230,933]
 gi|257883396|ref|ZP_05663049.1| vancomycin/teicoplanin A-type resistance protein vanA [Enterococcus
           faecium 1,231,502]
 gi|293384649|ref|ZP_06630508.1| D-alanine--D-lactate ligase [Enterococcus faecalis R712]
 gi|293387041|ref|ZP_06631608.1| D-alanine--D-lactate ligase [Enterococcus faecalis S613]
 gi|312907833|ref|ZP_07766821.1| D-ala D-ala ligase [Enterococcus faecalis DAPTO 512]
 gi|312909718|ref|ZP_07768569.1| D-ala D-ala ligase [Enterococcus faecalis DAPTO 516]
 gi|314943761|ref|ZP_07850498.1| D-ala D-ala ligase [Enterococcus faecium TX0133C]
 gi|314949442|ref|ZP_07852781.1| D-ala D-ala ligase [Enterococcus faecium TX0082]
 gi|314996820|ref|ZP_07861831.1| D-ala D-ala ligase [Enterococcus faecium TX0133a01]
 gi|320152792|ref|YP_004172615.1| VanA [Enterococcus faecium]
 gi|257815000|gb|EEV43758.1| D-ala D-ala ligase [Enterococcus faecium 1,230,933]
 gi|257819054|gb|EEV46382.1| vancomycin/teicoplanin A-type resistance protein vanA [Enterococcus
           faecium 1,231,502]
 gi|281335159|gb|ADA62243.1| Vancomycin Teicoplanin A-type resistance protein VanA /
           D-alanine--D-alanine ligase [Enterococcus faecium]
 gi|291078043|gb|EFE15407.1| D-alanine--D-lactate ligase [Enterococcus faecalis R712]
 gi|291083526|gb|EFE20489.1| D-alanine--D-lactate ligase [Enterococcus faecalis S613]
 gi|310626165|gb|EFQ09448.1| D-ala D-ala ligase [Enterococcus faecalis DAPTO 512]
 gi|311289972|gb|EFQ68528.1| D-ala D-ala ligase [Enterococcus faecalis DAPTO 516]
 gi|313589048|gb|EFR67893.1| D-ala D-ala ligase [Enterococcus faecium TX0133a01]
 gi|313597583|gb|EFR76428.1| D-ala D-ala ligase [Enterococcus faecium TX0133C]
 gi|313644171|gb|EFS08751.1| D-ala D-ala ligase [Enterococcus faecium TX0082]
 gi|319739744|gb|ADV60062.1| VanA [Enterococcus faecium]
          Length = 343

 Score =  297 bits (760), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 86/335 (25%), Positives = 148/335 (44%), Gaps = 45/335 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +A+L GG S E +VS+ S    A+ +    ++   I + +S    +              
Sbjct: 6   VAILFGGCSEEHDVSVKSAIEIAANINKEKYEPLYIGITKSGVWKMCEKPCAEWENDNCY 65

Query: 52  --------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
                                     D+AF+ LHG  GEDG +Q + EL  IP+    I 
Sbjct: 66  SAVLSPDKKMHGLLVKKNHEYEINHVDVAFSALHGKSGEDGSIQGLFELSGIPFVGCDIQ 125

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145
           +SA+ MDK  +  V  + G+      ++N+         + P  +KP + GSS G+  + 
Sbjct: 126 SSAICMDKSLTYIVAKNAGIATPAFWVINKDDRPVAATFTYPVFVKPARSGSSFGVKKVN 185

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD-ASLDVTEIAVPKSDFYSY-- 202
               +  D    S+  +  ++LIEQ V G E+ C V+G+ A+L V E+   +  +  +  
Sbjct: 186 SADEL--DYAIESARQYDSKILIEQAVSGCEVGCAVLGNSAALAVGEVDQIRLQYGIFRI 243

Query: 203 ----ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
               E +  S N+   +PA +  +    +Q  A   ++A+GCRG++R D      + ++ 
Sbjct: 244 HQEVEPEKGSENAVITVPADLSAEERGRIQETAKKIYKALGCRGLARVDMFL-QDNGRIV 302

Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
             E+N  PG T  S +P M A AG +  EL+  ++
Sbjct: 303 LNEVNTLPGFTSYSRYPRMMAAAGIALPELIDRLI 337


>gi|148241702|ref|YP_001226859.1| D-alanine--D-alanine ligase [Synechococcus sp. RCC307]
 gi|190359214|sp|A5GRJ7|DDL_SYNR3 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|147850012|emb|CAK27506.1| D-alanine--D-alanine ligase [Synechococcus sp. RCC307]
          Length = 345

 Score =  297 bits (760), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 102/338 (30%), Positives = 157/338 (46%), Gaps = 44/338 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASAL----EDAGFKVSQIDVDR--------------SV 42
           + ++ GG S E +VS+ S    A  L        ++V  + +DR              S 
Sbjct: 9   VGLIFGGASGEHDVSIRSAATVAEGLSSGANKERYRVQHVYIDRQGRWWGDATARQVLSS 68

Query: 43  GLVLAH--------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
           G  LA               L+ ++ + VLHG  GEDG +Q +  L++ P+  SG+L SA
Sbjct: 69  GQALADDGSRPGFSGFPDGCLEVEIWYPVLHGPNGEDGTIQGLFSLMQRPFVGSGVLGSA 128

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTM--------DSQHLISPPYVIKPLKGGSSLG 140
           + MDK+  K   S+ G+P  P   V    +        + +  +  P  IKP   GSS+G
Sbjct: 129 VGMDKLAMKAAFSAAGLPQGPYRPVLASELVSNSQLLEELETQLGYPCFIKPANLGSSVG 188

Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP--KSD 198
           I        +   L  ++S  H  +LL+E+ +   EL C V+G   L  + +      +D
Sbjct: 189 ISKATNRSELQAGLDLAAS--HDSRLLVEKGLQVRELECAVLGGQHLKASVLGEVSFDAD 246

Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
           +Y YE KYSS  S+  +PA +P  I    Q LA  A QA+G  G+SR DF ++  S  + 
Sbjct: 247 WYDYETKYSSGLSSTQIPADLPEAISSRAQHLAIEAVQAVGASGLSRVDFFYEEASGNLL 306

Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             EIN  PG T  S++P +   +G    EL+  ++E A
Sbjct: 307 INEINTLPGFTSQSMYPMLWKASGVPLEELVHQLLELA 344


>gi|328945544|gb|EGG39695.1| D-alanine-D-alanine ligase [Streptococcus sanguinis SK1087]
          Length = 353

 Score =  297 bits (760), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 97/339 (28%), Positives = 161/339 (47%), Gaps = 44/339 (12%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQ--------------------------- 35
           +L GG S+EREVS+ S ++   A+    F V                             
Sbjct: 13  LLYGGRSAEREVSVLSAESVMRAVNYDRFSVKTYFITKDGDFIQTQEFEATPAADEKLMT 72

Query: 36  ---IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
              +D+ R +     +    + F VLHG  GEDG +Q  LE+L++PY    IL+S+L+MD
Sbjct: 73  NATVDMSRKIKPSDIYEAGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNILSSSLAMD 132

Query: 93  KMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           K+ +K+V+ S G+   P + V           + +  +S P   KP   GSS+GI   K 
Sbjct: 133 KITTKRVLESAGIAQVPYVAVVDGEDLEQKIQEIEEKLSYPVFTKPSNMGSSVGIS--KS 190

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYEL 204
           D    L +    ++ +  ++L+EQ V   E+  G++G+A +  +     V    FY Y+ 
Sbjct: 191 DNQEELRVSLELAFKYDSRVLVEQGVTAREIEVGLLGNADVKSSLPGEVVKDVAFYDYQA 250

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           KY     T  +PA++P  +   +++ A  A +A+G  G+SR DF +     +VF  E+N 
Sbjct: 251 KYIDNKITMAIPAQLPEGVVNTMRQNAETAFRALGGLGLSRCDFFY-AEDGQVFLNELNT 309

Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMV---EDASCLR 300
            PG T  S++P +    G ++ +L+  +V   E+A   R
Sbjct: 310 MPGFTQWSMYPLLWENMGLAYPDLIEKLVGLAEEAFAKR 348


>gi|325690163|gb|EGD32167.1| D-alanine-D-alanine ligase [Streptococcus sanguinis SK115]
          Length = 353

 Score =  297 bits (760), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 96/339 (28%), Positives = 160/339 (47%), Gaps = 44/339 (12%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQ--------------------------- 35
           +L GG S+EREVS+ S ++   A+    F V                             
Sbjct: 13  LLYGGRSAEREVSVLSAESVMRAVNYDRFSVKTYFITKDGDFIQTQEFEAKPAADEKLMT 72

Query: 36  ---IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
              +D+ R +     + +  + F VLHG  GEDG +Q  LE+L++PY    IL+S L+MD
Sbjct: 73  NATVDMSRKIKPSDIYEEEAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNILSSGLAMD 132

Query: 93  KMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           K+ +K+V+ S G+   P + +           + +  ++ P   KP   GSS+GI   + 
Sbjct: 133 KITTKRVLESAGIAQVPYVALVDGEDLEQKIQEIEEKLTYPVFTKPSNMGSSVGISKSEN 192

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYEL 204
              +   L    ++ +  ++L+EQ V   E+  G++G+  +  T     V    FY YE 
Sbjct: 193 QAELRASLDL--AFKYDSRVLVEQGVTAREIEVGLLGNVDVKSTLPGEVVKDVAFYDYEA 250

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           KY     T  +PAKIP ++   +++ A  A +A+G  G+SR DF +     +VF  E+N 
Sbjct: 251 KYIDNKITMDIPAKIPEEVVSLMRQNAEAAFRALGGLGLSRCDFFY-AEDGQVFLNELNT 309

Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMV---EDASCLR 300
            PG T  S++P +    G ++ +L+  +V   E+A   R
Sbjct: 310 MPGFTQWSMYPLLWENMGLAYPDLIEKLVGLAEEAFAKR 348


>gi|153816394|ref|ZP_01969062.1| hypothetical protein RUMTOR_02646 [Ruminococcus torques ATCC 27756]
 gi|317500748|ref|ZP_07958965.1| D-alanine-D-alanine ligase [Lachnospiraceae bacterium 8_1_57FAA]
 gi|331089774|ref|ZP_08338668.1| hypothetical protein HMPREF1025_02251 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|145846282|gb|EDK23200.1| hypothetical protein RUMTOR_02646 [Ruminococcus torques ATCC 27756]
 gi|316897841|gb|EFV19895.1| D-alanine-D-alanine ligase [Lachnospiraceae bacterium 8_1_57FAA]
 gi|330403657|gb|EGG83212.1| hypothetical protein HMPREF1025_02251 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 350

 Score =  297 bits (760), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 99/351 (28%), Positives = 162/351 (46%), Gaps = 55/351 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------------------- 38
           + VL GG+S+ER+VSL+S       L + G     +DV                      
Sbjct: 3   IIVLAGGLSTERDVSLASAAGICRTLIEKGHDAFLLDVFLGLEHAPEHLEDVFTLPGHGL 62

Query: 39  --------DRSVGLVLAHLKPD------------------LAFNVLHGNFGEDGLVQAIL 72
                   +      +   +PD                  + F  LHG  GE+G +QA  
Sbjct: 63  EIAKNISCEEPDLAAVKASRPDQSDCFLGPNVIELCRLADITFLGLHGGEGENGKLQATF 122

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD---SQHLISPPYV 129
           +LL I YT    L  A++MDK  +KQV    G+     + +++ + D   +   +S P V
Sbjct: 123 DLLGIRYTGPDSLGCAVAMDKGLTKQVFLQAGIDTPAGVTIHKKSKDRSLALTGLSLPVV 182

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           IKP  GGSS+G+ ++  ++     L    S+ + D++++E+Y+ G E  CGV+ + +L  
Sbjct: 183 IKPCSGGSSIGVYIVSTEEEYAEAL--EKSFFYEDEVVVEEYIKGREFACGVIDNEALPP 240

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
            EI +PK+ F+ Y  KY +  +  V PA IP +    +  L   A +A+     SR+DFL
Sbjct: 241 IEI-IPKTGFFDYANKYQADATLEVCPADIPEETASRMMELTVKAFRALKLNVYSRADFL 299

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
            D     ++ LE+N  PGMT  S+ P+ A  AG  + +L   +++ +   R
Sbjct: 300 LDEKGN-LYCLEMNTLPGMTAASLLPKEAKAAGIEYGDLCELIIKKSLEAR 349


>gi|308177218|ref|YP_003916624.1| D-alanine--D-alanine ligase [Arthrobacter arilaitensis Re117]
 gi|307744681|emb|CBT75653.1| D-alanine--D-alanine ligase [Arthrobacter arilaitensis Re117]
          Length = 370

 Score =  297 bits (760), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 96/357 (26%), Positives = 149/357 (41%), Gaps = 65/357 (18%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP----------- 51
           +L GG SSE  VS  +      A++   F++  + + R  G  L    P           
Sbjct: 10  LLFGGRSSEHSVSCVTAAGVMHAIDRERFEIVPVGITRDGGWTLLDEDPEGWALNTGKLP 69

Query: 52  ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
                                             D+ F +LHG FGEDG +Q +LE+  +
Sbjct: 70  EISSVDHPVHLSTDAQKTSLLSYSDSAVADLGEIDVVFPLLHGPFGEDGSIQGMLEMAGV 129

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLIS------PPYV 129
            Y  SGI ASA+ MDK   K V    G  V P  ++       DS+  +        P  
Sbjct: 130 SYVGSGIAASAMGMDKHYMKVVFEGAGFNVGPYEVITNKQWLRDSEAAMKRCDNLQYPLF 189

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           +KP + GSS+GI  +     +   +  + +     +++IEQ + G E+ CGV+       
Sbjct: 190 VKPARAGSSVGITKVDDPSELRAAIEIARA--EDPKVIIEQGIVGREIECGVLEGRGSGP 247

Query: 190 TEIAVPK--------SDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGC 240
           +  ++P           FY +E KY    +  +  PA +  +   E++ LA  A  AI  
Sbjct: 248 SRASLPGEIAVADNLHTFYDFEAKYVDGAAAELSCPANLSDEATLEIRELAVKAFDAIDA 307

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
            G+SR DF + P        EIN  PG TP S++P+M A  G  +REL+  ++  A+
Sbjct: 308 EGLSRVDFFYTP-EGDWIINEINTMPGFTPSSMYPQMWAKTGIEYRELIDELIALAT 363


>gi|126650619|ref|ZP_01722842.1| D-alanylalanine synthetase [Bacillus sp. B14905]
 gi|126592775|gb|EAZ86774.1| D-alanylalanine synthetase [Bacillus sp. B14905]
          Length = 308

 Score =  297 bits (760), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 97/299 (32%), Positives = 163/299 (54%), Gaps = 9/299 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGG SSE++VS+ +GK   + L    + V +I ++    ++      D+A   LHG
Sbjct: 10  VGVIMGGTSSEKQVSIMTGKEMVAHLNKQKYDVVEIVLEDHQEVIEKVQGIDVALLALHG 69

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117
            FGEDG +Q +LE L IPYT SG+LAS+L MDK  +K+++   G+     + + +     
Sbjct: 70  KFGEDGTIQGVLETLGIPYTGSGLLASSLCMDKNMAKKILRYEGIATPDWMHLVKGEELP 129

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
           +    L+  P V+KP  GGSS+G+ ++    ++   + +   W   ++++IEQY+ G E+
Sbjct: 130 LQDIELMGYPLVVKPNAGGSSVGVQIVHDRNALLTAVAEVLKW--DNEIIIEQYMIGDEI 187

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC ++ D  L V  I    + F+ Y+ KY    ST   P ++PL I+  V + A  ++ +
Sbjct: 188 TCPILNDRLLPVLSIK-HTAVFFDYQAKYD-DASTIEEPVELPLAIHDRVAKAAMTSYTS 245

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           + C   +R D L        + LE+N  PGMT  S+ P+ A  AG S+  LL  +++ +
Sbjct: 246 LKCSVYARVDMLIKE--GVPYVLEVNTLPGMTQNSLLPKSAFAAGISYSALLDSIIDSS 302


>gi|226365967|ref|YP_002783750.1| D-alanyl-alanine synthetase A [Rhodococcus opacus B4]
 gi|254767736|sp|C1B2N8|DDL_RHOOB RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|226244457|dbj|BAH54805.1| D-alanine--D-alanine ligase [Rhodococcus opacus B4]
          Length = 368

 Score =  297 bits (760), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 97/360 (26%), Positives = 159/360 (44%), Gaps = 65/360 (18%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +AV+ GG S+E  VS  S  +    L+   ++V  I +      VL    P         
Sbjct: 8   VAVIFGGRSNEHSVSCVSAGSVLRNLDPERYEVVPIGITTEGSWVLGSTDPESLSIRGRS 67

Query: 52  --------------------------------------DLAFNVLHGNFGEDGLVQAILE 73
                                                 D+ F VLHG +GEDG +Q +LE
Sbjct: 68  LPSVDADGSALALTADPTRSGDLVALDDGEAGKILASVDVVFPVLHGAYGEDGTIQGLLE 127

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM----DSQHLISPPYV 129
           L  +PY   G+LASA  MDK  +K+++++ G+P+   +++   T     + +  +  P  
Sbjct: 128 LAGVPYVGPGVLASAAGMDKEFTKKLLAAEGLPIGFQVVLRPGTATLTDEQRSRLHLPVF 187

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM----GDA 185
           +KP +GGSS+GI  +   +   LD   + +  H  ++++E  + G E+ CGV+    GD 
Sbjct: 188 VKPARGGSSIGITRV--AEWAALDDAIAHARRHDPKVIVESGIAGREVECGVLEFPDGDV 245

Query: 186 SLDVT-EIAVPKS-----DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
              V  EI +P+       FY ++ KY        +PAK+   +  E++ LA  A  A+ 
Sbjct: 246 RASVIAEIRMPEGADDDEAFYDFDSKYLDDVCEFDVPAKLEDSVSDEIRALAVRAFSALD 305

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
           C+G++R DF            EIN  PG T +S++P M    G  +  L+  +V+ A   
Sbjct: 306 CQGLARVDFFVTEDG--PVINEINTMPGFTSISMYPRMWDAVGVDYGTLVSTLVDTALAR 363


>gi|167631710|ref|ZP_02390037.1| D-alanine--D-alanine ligase [Bacillus anthracis str. A0442]
 gi|254743190|ref|ZP_05200875.1| D-alanine--D-alanine ligase [Bacillus anthracis str. Kruger B]
 gi|167532008|gb|EDR94644.1| D-alanine--D-alanine ligase [Bacillus anthracis str. A0442]
          Length = 304

 Score =  297 bits (760), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 83/303 (27%), Positives = 157/303 (51%), Gaps = 9/303 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGG+SSE++VS+ +G    + L+   +++  I ++  + L+      D A   LHG
Sbjct: 3   IGVIMGGVSSEKQVSIMTGNEMIANLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117
            +GEDG  Q  LE L IPY+ S +L+S + MDK  SK+++   G+     I + +     
Sbjct: 63  KYGEDGTAQGTLESLGIPYSGSNMLSSGICMDKNISKKILRYEGIETPDWIELTKMEDLN 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            D    +  P V+KP  GGSS+G+ ++     +    +  + +    +++IE+Y+ G E+
Sbjct: 123 FDELDKLGFPLVVKPNSGGSSVGVKIVYDKDELIS--MLETVFEWDSEVVIEKYIKGEEI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC +     L +  I    ++F+ Y  KY   ++   +  ++P ++ + V + +   ++A
Sbjct: 181 TCSIFDGKQLPIISIR-HAAEFFDYNAKYDDASTIEEV-IELPAELKERVNKASLACYKA 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           + C   +R D +        + +E+N  PGMT  S+ P+ A  AG  + +LL  ++E + 
Sbjct: 239 LKCSVYARVDMMV--KDGIPYVMEVNTLPGMTQASLLPKSADAAGIHYSKLLDMIIETSL 296

Query: 298 CLR 300
            +R
Sbjct: 297 RVR 299


>gi|237785790|ref|YP_002906495.1| D-alanyl-alanine synthetase A [Corynebacterium kroppenstedtii DSM
           44385]
 gi|237758702|gb|ACR17952.1| D-alanine-D-alanine ligase [Corynebacterium kroppenstedtii DSM
           44385]
          Length = 412

 Score =  297 bits (760), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 98/353 (27%), Positives = 161/353 (45%), Gaps = 61/353 (17%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +AV+ GG SSE  +S  S  A  S L+   ++V  I + R    V+    P         
Sbjct: 57  VAVVYGGRSSEHSISCVSAGAVISHLDPDRYQVVPIGITRDGRWVVGSSDPKELSIRERQ 116

Query: 52  -------------------------------------DLAFNVLHGNFGEDGLVQAILEL 74
                                                D+ F VLHG FGEDG VQ + ++
Sbjct: 117 LPEVKAGTSLSLSLDPQHAGRFVYADGPDVGQVFADVDVIFPVLHGGFGEDGTVQGLFDM 176

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---FTMDSQHLISPPYVIK 131
             +PY  +G+LASA SMDK  +K++ ++ G+P+   +++      T + ++L+  P  +K
Sbjct: 177 ASVPYVGAGVLASAASMDKEFTKKLAAAEGLPIGRDVVLRETRSLTEEEKNLLGLPVFVK 236

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM--GDASLDV 189
           P +GGSS+GI  +  DQ   LD     +  H  ++++E  + G E+ CGV+   D +++ 
Sbjct: 237 PARGGSSIGISKV--DQWDELDDALDLARQHDSKVIVESMIVGTEVECGVLQRPDGTVEA 294

Query: 190 TEIAV------PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           +  A           FY ++ KY     T  +P     D  + ++ LA     A+ C G+
Sbjct: 295 SLPAQLEDTESGDEGFYGFDTKYLDNVITAQIPPHFDDDTIRHIRELAVETFHALDCEGL 354

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +R DF      R     EIN  PG TP+S++P+M    G  + +LL  +++ A
Sbjct: 355 ARIDFFVT--DRGPVLNEINTMPGFTPISMYPQMFGAMGIDYPDLLDLLIQRA 405


>gi|315937019|gb|ADU56028.1| hypothetical protein CA37-5 [uncultured organism CA37]
          Length = 345

 Score =  297 bits (760), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 89/337 (26%), Positives = 148/337 (43%), Gaps = 44/337 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           + ++ GG S E  VS+ S +  A +L+   ++   I + +S    L              
Sbjct: 6   VGIIFGGSSEEHPVSVKSAQEVAKSLDSEKYEAFWIGITKSGAWRLCAGPGADWETGSRA 65

Query: 47  --------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
                                 ++ DL   VLHG  GEDG +Q +LEL  IPY    + +
Sbjct: 66  AMLSPDRSVHGLLVLEQGRYQEVRLDLVLPVLHGKTGEDGAMQGLLELSGIPYVGCDVQS 125

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           SA+ MDK  +  V  S G+      +V          ++ P  +KP + GSS G+  +  
Sbjct: 126 SAVCMDKSLTYAVAGSAGIATPRFWVVTADEKPDPERLTYPVFVKPARSGSSFGVSKVSH 185

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSY 202
           ++ +P  +  +  +    ++LIE+ V G E+ C ++G+     + +V  +A+    F  +
Sbjct: 186 EEELPSAVETARQF--DSKVLIEEAVAGSEVGCAILGNDGDLVAGEVDRVALSHGFFRIH 243

Query: 203 ---ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
              E +  S NST + PA I  +    VQ  A   ++A+GCRG+SR D         +  
Sbjct: 244 QESEPERGSENSTFICPADISAESRSLVQETAKAIYRALGCRGLSRVDMFL-KEDGTIVL 302

Query: 260 LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            E+N  PG+T  S +P M A AG     ++  +V  A
Sbjct: 303 NEVNTLPGLTSYSRYPRMMAAAGLPLGAVIDQIVSLA 339


>gi|325697104|gb|EGD38991.1| D-alanine-D-alanine ligase [Streptococcus sanguinis SK160]
 gi|327473367|gb|EGF18787.1| D-alanine-D-alanine ligase [Streptococcus sanguinis SK408]
          Length = 353

 Score =  297 bits (760), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 95/339 (28%), Positives = 159/339 (46%), Gaps = 44/339 (12%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQ--------------------------- 35
           +L GG S+EREVS+ S ++   A+    F V                             
Sbjct: 13  LLYGGRSAEREVSVLSAESVMRAVNYDRFSVKTYFITKDGDFIQTQEFEAKPAADEKLMT 72

Query: 36  ---IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
              +D+ + +     +    + F VLHG  GEDG +Q  LE+L++PY    IL+S L+MD
Sbjct: 73  NATVDISQKIKPSDIYEDGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNILSSGLAMD 132

Query: 93  KMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           K+ +K+V+ S G+   P + +           + +  ++ P   KP   GSS+GI   + 
Sbjct: 133 KITTKRVLESAGIAQVPYVALVDGENLEQKIQEIEEKLTYPVFTKPSNMGSSVGISKSEN 192

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYEL 204
              +   L    ++ +  ++L+EQ V   E+  G++G+  +  T     V    FY YE 
Sbjct: 193 QAELRASLDL--AFKYDSRVLVEQGVTAREIEVGLLGNVDVKSTLPGEVVKDVAFYDYEA 250

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           KY     T  +PAKIP ++   +++ A  A +A+G  G+SR DF +     +VF  E+N 
Sbjct: 251 KYIDNKITMDIPAKIPDEVVSLMRQNAEAAFRALGGLGLSRCDFFYVE-DGQVFLNELNT 309

Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMV---EDASCLR 300
            PG T  S++P +    G ++ +L+  +V   E+A   R
Sbjct: 310 MPGFTQWSMYPLLWENMGLAYPDLIEKLVGLAEEAFAKR 348


>gi|313122929|ref|YP_004033188.1| d-alanine-d-alanine ligase a [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
 gi|312279492|gb|ADQ60211.1| D-alanine-D-alanine ligase A [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
          Length = 362

 Score =  297 bits (760), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 88/343 (25%), Positives = 165/343 (48%), Gaps = 49/343 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD--------------------- 39
           + ++ GG SSE EVS++S       ++   F V  I +                      
Sbjct: 7   VGLIFGGNSSEYEVSITSAGNIYKEIDKDKFDVHPIWITNSGYVASEADSYKVLEEPGYM 66

Query: 40  ----------RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
                      ++  + +  + D+ F ++HGN GEDG++Q +  L++ P+    +LA+A+
Sbjct: 67  VEKTDKTANLSNLIELASRPELDVLFPIVHGNLGEDGVLQGLFRLIDKPFVGVDVLAAAV 126

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ--HLISPP----------YVIKPLKGGS 137
           +MDK  +K +    GVPV   + + R+  +      +S              +KP   GS
Sbjct: 127 TMDKEFTKILAQRAGVPVAKWVSIKRYEYEDAKNQKLSYDWVSGQLGTSNLFVKPSNQGS 186

Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAV 194
           S+GI  +  D +    L  + ++ + D++L+E+ + G E+   V+G+    V+    I  
Sbjct: 187 SVGITHVTDDSNYAEAL--AEAFKYDDKVLVEEGIVGTEVETAVLGNDHPVVSGVGRIIN 244

Query: 195 PKSDFYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
             + +YSYE KYS+ ++T +  PA+IP +  ++VQ  A   +Q   C G++R D +    
Sbjct: 245 ADNTWYSYENKYSTESTTTLQIPAQIPAETAEKVQENALKIYQITECSGMARIDSMLRES 304

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             +V + E+N  PG T +S++P++   AG S+ +L+  ++  A
Sbjct: 305 DGEVIFNELNALPGFTNISMYPKLFEEAGISYPDLITRLIRLA 347


>gi|257869524|ref|ZP_05649177.1| vancomycin resistance protein vanC [Enterococcus gallinarum EG2]
 gi|257803688|gb|EEV32510.1| vancomycin resistance protein vanC [Enterococcus gallinarum EG2]
          Length = 344

 Score =  297 bits (760), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 95/338 (28%), Positives = 166/338 (49%), Gaps = 45/338 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL-----VLAHLK----- 50
           +AVL GG S E  VSL+S  +   A++   ++V  I +  ++        LA+++     
Sbjct: 5   IAVLFGGNSPEYSVSLTSAASVIQAIDPLKYEVMTIGIAPTMDWYWYQGNLANVRNDTWL 64

Query: 51  ------------------------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
                                   PD+ F VLHG +GEDG +Q +LEL+ +PY    + A
Sbjct: 65  EDHKNCHQLTFSSQGFILGEKRIVPDVLFPVLHGKYGEDGCIQGLLELMNLPYVGCHVAA 124

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIKPLKGGSSLG 140
           SAL M+K    Q+  + G+   P++L++R+  D   +         P  IKP + GSS G
Sbjct: 125 SALCMNKWLLHQLADTMGIASAPTLLLSRYENDPATIDRFIQDHGFPIFIKPNEAGSSKG 184

Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK--SD 198
           I  +    ++   L  ++++ +G  +LI++ + GIE+ CG++G+  L +           
Sbjct: 185 ITKVTDKTALQSAL--TTAFAYGSTVLIQKAIAGIEIGCGILGNEQLTIGACDAISLVDG 242

Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
           F+ +E KY  +++T  +PA +PL +  +++  A L ++ +G  G++R DF        ++
Sbjct: 243 FFDFEEKYQLISATITVPAPLPLALESQIKEQAQLLYRNLGLTGLARIDFFVTNQ-GAIY 301

Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             EIN  PG T  S +P M A  G S+  L+  ++  A
Sbjct: 302 LNEINTMPGFTGHSRYPAMMAEVGLSYEILVEQLIALA 339


>gi|267275|sp|P29753|VANC_ENTGA RecName: Full=Vancomycin C-type resistance protein VanC; AltName:
           Full=VanC ligase
 gi|148325|gb|AAA24786.1| D-alanine-D-alanine ligase-related protein [Enterococcus
           gallinarum]
 gi|161779897|gb|ABX79440.1| VanC1 [Enterococcus gallinarum]
          Length = 343

 Score =  297 bits (760), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 95/338 (28%), Positives = 166/338 (49%), Gaps = 45/338 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL-----VLAHLK----- 50
           +AVL GG S E  VSL+S  +   A++   ++V  I +  ++        LA+++     
Sbjct: 4   IAVLFGGNSPEYSVSLTSAASVIQAIDPLKYEVMTIGIAPTMDWYWYQGNLANVRNDTWL 63

Query: 51  ------------------------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
                                   PD+ F VLHG +GEDG +Q +LEL+ +PY    + A
Sbjct: 64  EDHKNCHQLTFSSQGFILGEKRIVPDVLFPVLHGKYGEDGCIQGLLELMNLPYVGCHVAA 123

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIKPLKGGSSLG 140
           SAL M+K    Q+  + G+   P++L++R+  D   +         P  IKP + GSS G
Sbjct: 124 SALCMNKWLLHQLADTMGIASAPTLLLSRYENDPATIDRFIQDHGFPIFIKPNEAGSSKG 183

Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK--SD 198
           I  +    ++   L  ++++ +G  +LI++ + GIE+ CG++G+  L +           
Sbjct: 184 ITKVTDKTALQSAL--TTAFAYGSTVLIQKAIAGIEIGCGILGNEQLTIGACDAISLVDG 241

Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
           F+ +E KY  +++T  +PA +PL +  +++  A L ++ +G  G++R DF        ++
Sbjct: 242 FFDFEEKYQLISATITVPAPLPLALESQIKEQAQLLYRNLGLTGLARIDFFVTNQ-GAIY 300

Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             EIN  PG T  S +P M A  G S+  L+  ++  A
Sbjct: 301 LNEINTMPGFTGHSRYPAMMAEVGLSYEILVEQLIALA 338


>gi|167626884|ref|YP_001677384.1| D-alanyl-alanine synthetase A [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|190359131|sp|B0TVX5|DDL_FRAP2 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|167596885|gb|ABZ86883.1| D-alanine--D-alanine ligase [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
          Length = 297

 Score =  296 bits (759), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 103/299 (34%), Positives = 161/299 (53%), Gaps = 8/299 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59
           + VL GG S EREVSL SGKA   +L + G+    +D   + + + L  L PD  F  LH
Sbjct: 6   IVVLYGGDSPEREVSLKSGKAVLDSLLNQGYDAVGLDASSKDLVVKLLELNPDKCFIALH 65

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G  GE+G V A+LELL I +T S + +  ++MDKM SK+++    +P   +  +    ++
Sbjct: 66  GEDGENGRVAALLELLGIKHTGSTMKSCVVTMDKMISKEILMHHRMPTPMAKFLTDRLVE 125

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
           +   IS P  +KP  GGSS+    +K  + +     Q+S      +++IEQ+V G E+T 
Sbjct: 126 ADE-ISFPVAVKPSSGGSSIATFKVKSLEELENAYQQASKH---GEVMIEQWVTGKEITV 181

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
            ++ +       I  P ++FY YE KYS   S +  P+ +      EV++LA  A+  +G
Sbjct: 182 AIVNNDVYSSVWIE-PLNEFYDYESKYS-GKSIYHAPSGLCEQKELEVRQLAKKAYDLLG 239

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           C+G +R DF++D      + +EIN  PGMT  S+ P+ AA  G  F   +  ++E A C
Sbjct: 240 CKGHARVDFIYDDK-GDFYIMEINSSPGMTENSLSPKSAAAEGIDFDSFVKSILEQAQC 297


>gi|325263136|ref|ZP_08129871.1| D-alanine--D-alanine ligase [Clostridium sp. D5]
 gi|324031529|gb|EGB92809.1| D-alanine--D-alanine ligase [Clostridium sp. D5]
          Length = 351

 Score =  296 bits (759), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 97/351 (27%), Positives = 158/351 (45%), Gaps = 55/351 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------------------- 38
           + VL GG+S+ER+VSLSS       L + G     +DV                      
Sbjct: 3   IIVLAGGLSTERDVSLSSSAGICRTLLEKGHDAFLLDVFLGFPYNPAHLDEVFTLPGHGL 62

Query: 39  --------DRSVGLVLAHLKPD------------------LAFNVLHGNFGEDGLVQAIL 72
                          +   +PD                  + F  LHG  GE+G +QA  
Sbjct: 63  EIAKNISTTEPDIEAVKASRPDQSDCFLGPNVIELCRMADITFLGLHGGEGENGKLQATF 122

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD---SQHLISPPYV 129
           +LL I YT    L  A++MDK  +KQ+    G+     + +++   +       +  P V
Sbjct: 123 DLLGIKYTGPDSLGCAVAMDKGFTKQIFLQTGIDTPAGVSLHKKAAEKSLEALGLKLPVV 182

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           +KP  GGSS+G+ ++  +      L  SSS+ + D+++IE+Y+ G E  CG++   +L  
Sbjct: 183 VKPCSGGSSIGVYIVTTESEYEEAL--SSSFRYEDEVVIEEYIKGREFACGIIDGEALPP 240

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
            EI +PK+ F+ Y  KY +  +  V PA I  D    +  L   A++A+     SR+DFL
Sbjct: 241 IEI-IPKTGFFDYANKYQAGATEEVCPADIDEDTADRMMELTVKAYRALKLNVYSRADFL 299

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
            D     ++ LE+N  PGMT  S+ P+ A  +G  + +L   +++ +   R
Sbjct: 300 LDSRGN-LYCLEVNTLPGMTAASLLPKEAKASGIEYGDLCELIIQKSLEAR 349


>gi|161779893|gb|ABX79438.1| VanC1 [Enterococcus gallinarum]
          Length = 343

 Score =  296 bits (759), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 95/338 (28%), Positives = 166/338 (49%), Gaps = 45/338 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL-----VLAHLK----- 50
           +AVL GG S E  VSL+S  +   A++   ++V  I +  ++        LA+++     
Sbjct: 4   IAVLFGGNSPEYSVSLTSAASVIQAIDPLKYEVMTIGIAPTMDWYWYQGNLANVRNDTWL 63

Query: 51  ------------------------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
                                   PD+ F VLHG +GEDG +Q +LEL+ +PY    + A
Sbjct: 64  EDHKNCHQLTFSSQGFILGEKRIVPDVLFPVLHGKYGEDGCIQGLLELMNLPYVGCHVAA 123

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIKPLKGGSSLG 140
           SAL M+K    Q+  + G+   P++L++R+  D   +         P  IKP + GSS G
Sbjct: 124 SALCMNKWLLHQLADTMGIASAPTLLLSRYENDPATIDRFIQDHGFPIFIKPNEAGSSKG 183

Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK--SD 198
           I  +    ++   L  ++++ +G  +LI++ + GIE+ CG++G+  L +           
Sbjct: 184 ITKVTDKTALQSAL--TTAFAYGSTVLIQKAIAGIEIGCGILGNEQLTIGACDAISLVDG 241

Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
           F+ +E KY  +++T  +PA +PL +  +++  A L ++ +G  G++R DF        ++
Sbjct: 242 FFDFEEKYQLISATITVPAPLPLALESQIKEQAQLLYRNLGLTGLARIDFFVTNQ-GAIY 300

Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             EIN  PG T  S +P M A  G S+  L+  ++  A
Sbjct: 301 LNEINTMPGFTGHSRYPAMMAEVGLSYEILVEKLIALA 338


>gi|331092269|ref|ZP_08341097.1| hypothetical protein HMPREF9477_01740 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330401701|gb|EGG81280.1| hypothetical protein HMPREF9477_01740 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 350

 Score =  296 bits (759), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 101/347 (29%), Positives = 161/347 (46%), Gaps = 55/347 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID----------------------- 37
           + VL GG+S+ER+VSLSSG      L++ G  V  +D                       
Sbjct: 3   IIVLAGGLSTERDVSLSSGAGICRTLKERGHDVFLLDAFMGLEYDSDKLEEVFTLENSGL 62

Query: 38  -------VDRSVGLVLAHLKPD------------------LAFNVLHGNFGEDGLVQAIL 72
                          +   +PD                  + F  LHG+ GE+G +QA  
Sbjct: 63  EIAEGIKTTEPDLEAVKASRPDQSPSLLGPNVIELCRMADIVFMGLHGDIGENGKLQATF 122

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD---SQHLISPPYV 129
           ++L I YT    L SAL+MDK  +KQ+    GVP      + +   D   ++  +S P V
Sbjct: 123 DILGIKYTGPNSLGSALAMDKGVTKQIFKMSGVPTPAGTWLKKADKDTTLNELGLSLPVV 182

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           +KP  GGSS+G+ + + +      +    S+ + D+++IE Y+ G E   G++   +L V
Sbjct: 183 VKPCSGGSSIGVYIPQTEAEYKTAV--EESFKYEDEIIIEPYIKGREFAVGIIDGKALPV 240

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
            EI +PKS+F+ Y  KY +  +  + PA I   I K +Q     A  A+     SR+DFL
Sbjct: 241 IEI-IPKSNFFDYTNKYQAGCTEEICPAHIDDAIAKRMQEATEKAFAALKLDVYSRADFL 299

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                 +++ LE+N  PGMT  S+ P+ A  AG S+ +L   +++ +
Sbjct: 300 LTE-DGEIYCLEVNSLPGMTSASLLPKEAQAAGISYGDLCELIIQKS 345


>gi|313890784|ref|ZP_07824409.1| D-ala D-ala ligase N-terminal domain protein [Streptococcus
           pseudoporcinus SPIN 20026]
 gi|313120885|gb|EFR43999.1| D-ala D-ala ligase N-terminal domain protein [Streptococcus
           pseudoporcinus SPIN 20026]
          Length = 348

 Score =  296 bits (759), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 91/334 (27%), Positives = 159/334 (47%), Gaps = 41/334 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---VLAHLKPD----- 52
           + +L GG S+EREVS+ S ++   A+    F V    + ++           KP      
Sbjct: 6   LVLLYGGRSAEREVSVLSAESVMRAINYDRFLVKTYFISQAGDFYKTQEWSQKPAETEKL 65

Query: 53  ----------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
                                 + F +LHG  GEDG +Q  LE+L++PY  + IL S+++
Sbjct: 66  MTNQTIVAASQVKASDIYEEGAVVFPILHGPMGEDGSIQGFLEVLKMPYIGTSILGSSVA 125

Query: 91  MDKMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
           MDK+ +K+V+ S GVP     +      +     ++   +S P  +KP   GSS+GI   
Sbjct: 126 MDKITTKRVLESAGVPQVAYKVFVEGNSLEECLKEALTNLSFPIFVKPANMGSSVGISKA 185

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202
           + +  +   +  +    +  ++LIEQ V+  E+  G++G+  +  T     V +  FY Y
Sbjct: 186 ESESELREAIQLAL--QYDSRILIEQGVNAREIEVGLLGNTDVTSTLPGEVVKEVAFYDY 243

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
           + KY   N T  +PA++  ++  +++  A  A +A+GC G+SR DF        ++  E+
Sbjct: 244 QAKYIDNNITMAIPAELETELANKMRAYAENAFKALGCCGLSRCDFFLT-RDGSIYLNEL 302

Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           N  PG T  S++P +    G S+ +L+  +V  A
Sbjct: 303 NTMPGFTQWSMYPLLWENMGLSYSDLIEKLVALA 336


>gi|326773651|ref|ZP_08232934.1| D-alanine--D-alanine ligase [Actinomyces viscosus C505]
 gi|326636881|gb|EGE37784.1| D-alanine--D-alanine ligase [Actinomyces viscosus C505]
          Length = 378

 Score =  296 bits (759), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 91/365 (24%), Positives = 157/365 (43%), Gaps = 69/365 (18%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +AV+ GG S E  +S ++     SA++   ++V  + +      +L    P         
Sbjct: 11  VAVVFGGRSGEHTISCATAAGVLSAIDRDRYEVLPVGITPEGQWLLVEDDPAALELSDNR 70

Query: 52  --------------------------------------DLAFNVLHGNFGEDGLVQAILE 73
                                                 D+   +LHG +GEDG +Q +LE
Sbjct: 71  PPVTITAEGLGRGRLTAPLGGGELTVLGPTGPEILGRVDVVLPLLHGPYGEDGTIQGMLE 130

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTMDSQHLIS------ 125
           ++ IPY   G+LASA  MDK  +K ++ + G+   P ++V  + +  D + ++       
Sbjct: 131 MMGIPYVGCGVLASAAGMDKQVTKVLLGAAGIATAPHVVVGPHAWKRDPEAILEACRSLT 190

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            P  +KP + GSSLGI  + + + +   +  + +     ++L+E  + G E+   V+   
Sbjct: 191 YPLFVKPARAGSSLGISKVDRPEDLAGAIEAARA--VDPKVLVESGIVGREVEVAVLQGR 248

Query: 186 SLDVTEIAVPK----------SDFYSYELKYSSLNST-HVLPAKIPLDIYKEVQRLAFLA 234
             D   +A P            +FY YE KY + ++   V PA+I  +    +   A  A
Sbjct: 249 GDDAPRVAEPGEIAMDASQGAGEFYDYETKYLAHDAVAMVCPARIGPEARDLLMDTAARA 308

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            +A+GC G++R DF        V   EIN  PG TP S++P M   +G  + EL+  ++E
Sbjct: 309 FEALGCEGLARVDFFLTDAGEAV-VNEINTMPGFTPFSMYPYMWQVSGLGYTELVSELIE 367

Query: 295 DASCL 299
            A   
Sbjct: 368 LAVAR 372


>gi|324993372|gb|EGC25292.1| D-alanine-D-alanine ligase [Streptococcus sanguinis SK405]
 gi|327458730|gb|EGF05078.1| D-alanine-D-alanine ligase [Streptococcus sanguinis SK1057]
          Length = 353

 Score =  296 bits (759), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 96/339 (28%), Positives = 161/339 (47%), Gaps = 44/339 (12%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQ--------------------------- 35
           +L GG S+EREVS+ S ++   A+    F V                             
Sbjct: 13  LLYGGRSAEREVSVLSAESVMRAVNYDRFSVKTYFITKDGDFIQTQEFEAKPAADEKLMT 72

Query: 36  ---IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
              +D+ R +     +    + F VLHG  GEDG +Q  LE+L++PY    IL+S+L+MD
Sbjct: 73  NATVDMSRKIKPSDIYEDGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNILSSSLAMD 132

Query: 93  KMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           K+ +K+V+ S G+   P + +           + +  ++ P   KP   GSS+GI   + 
Sbjct: 133 KITTKRVLESAGIAQVPYVALVDGEDLEQKIQEIEEKLTYPVFTKPSNMGSSVGISKSEN 192

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYEL 204
              +   L    ++ +  ++L+EQ V   E+  G++G+  +  T     V    FY YE 
Sbjct: 193 QAELRASLDL--AFKYDSRVLVEQGVTAREIEVGLLGNVDVKSTLPGEVVKDVAFYDYEA 250

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           KY     T  +PAKIP ++   +++ A +A +A+G  G+SR DF +     +VF  E+N 
Sbjct: 251 KYIDNKITMDIPAKIPEEVVSLMRQNAEVAFRALGGLGLSRCDFFY-AEDGQVFLNELNT 309

Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMV---EDASCLR 300
            PG T  S++P +    G ++ +L+  +V   E+A   R
Sbjct: 310 MPGFTQWSMYPLLWENMGLAYPDLIEKLVGLAEEAFAKR 348


>gi|300858333|ref|YP_003783316.1| D-alanine-D-alanine ligase [Corynebacterium pseudotuberculosis
           FRC41]
 gi|300685787|gb|ADK28709.1| D-alanine-D-alanine ligase [Corynebacterium pseudotuberculosis
           FRC41]
 gi|302206051|gb|ADL10393.1| D-alanyl-alanine synthetase A [Corynebacterium pseudotuberculosis
           C231]
 gi|302330602|gb|ADL20796.1| D-alanyl-alanine synthetase A [Corynebacterium pseudotuberculosis
           1002]
 gi|308276287|gb|ADO26186.1| D-alanyl-alanine synthetase A [Corynebacterium pseudotuberculosis
           I19]
          Length = 363

 Score =  296 bits (759), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 93/351 (26%), Positives = 157/351 (44%), Gaps = 57/351 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           +AV+ GG SSE  VS  S  A  S L+   ++V  + + R     +              
Sbjct: 16  VAVVYGGQSSEHSVSCVSAGAIMSHLDPQKYEVFPVGITRDGVWTVGESDATKLRTVDRV 75

Query: 49  ------------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIP 78
                                          + D+ F  LHG FGEDG +Q + EL  IP
Sbjct: 76  MPEVEFVREVKLSVNPRSAGEFRYEDGTLYAQADVIFPALHGRFGEDGTIQGMFELSGIP 135

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF---TMDSQHLISPPYVIKPLKG 135
           Y  +G+L+SA  MDK  +K+++++ G+PV   +++      T   + ++  P  +KP +G
Sbjct: 136 YVGTGVLSSACGMDKEYTKKLLAAEGLPVGKEVILRGDETLTESDKQMLGLPVFVKPARG 195

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT----- 190
           GSS+GI  + +      D   + +  H  ++++E  + G+E+ CGV+  A   +      
Sbjct: 196 GSSIGISRVIEWDDF--DAALTLAREHDTKVIVEAEIKGVEVECGVLERADGSLIASVPA 253

Query: 191 ---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
              ++   +  FY ++ KY     T  +PA         +Q L+  A QA+ CRG+SR D
Sbjct: 254 QLEDVDEGEEGFYGFDTKYLDNIVTATIPAPFDQQTIALIQSLSLEAFQALNCRGLSRVD 313

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           F            E+N  PG TP+S++P++    G  + ELL  +++ A  
Sbjct: 314 FFVTDQG--PVLNEVNTMPGFTPISMYPQVFEATGIGYAELLSHLIDQALA 362


>gi|161779889|gb|ABX79436.1| VanC1 [Enterococcus gallinarum]
 gi|161779895|gb|ABX79439.1| VanC1 [Enterococcus gallinarum]
          Length = 343

 Score =  296 bits (759), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 95/338 (28%), Positives = 166/338 (49%), Gaps = 45/338 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL-----VLAHLK----- 50
           +AVL GG S E  VSL+S  +   A++   ++V  I +  ++        LA+++     
Sbjct: 4   IAVLFGGNSPEYSVSLASAASVIQAIDPLKYEVMTIGIAPTMDWYWYQGNLANVRNDTWL 63

Query: 51  ------------------------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
                                   PD+ F VLHG +GEDG +Q +LEL+ +PY    + A
Sbjct: 64  EDHKNCHQLTFSSQGFILGEKRIVPDVLFPVLHGKYGEDGCIQGLLELMNLPYVGCHVAA 123

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIKPLKGGSSLG 140
           SAL M+K    Q+  + G+   P++L++R+  D   +         P  IKP + GSS G
Sbjct: 124 SALCMNKWLLHQLADTMGIASAPTLLLSRYENDPATIDRFIQDHGFPIFIKPNEAGSSKG 183

Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK--SD 198
           I  +    ++   L  ++++ +G  +LI++ + GIE+ CG++G+  L +           
Sbjct: 184 ITKVTDKTALQSAL--TTAFAYGSTVLIQKAIAGIEIGCGILGNEQLTIGACDAISLVDG 241

Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
           F+ +E KY  +++T  +PA +PL +  +++  A L ++ +G  G++R DF        ++
Sbjct: 242 FFDFEEKYQLISATITVPAPLPLALESQIKEQAQLLYRNLGLTGLARIDFFVTNQ-GAIY 300

Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             EIN  PG T  S +P M A  G S+  L+  ++  A
Sbjct: 301 LNEINTMPGFTGHSRYPAMMAEVGLSYEILVEQLIALA 338


>gi|218781084|ref|YP_002432402.1| D-alanine/D-alanine ligase [Desulfatibacillum alkenivorans AK-01]
 gi|218762468|gb|ACL04934.1| D-alanine/D-alanine ligase [Desulfatibacillum alkenivorans AK-01]
          Length = 320

 Score =  296 bits (759), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 102/305 (33%), Positives = 162/305 (53%), Gaps = 12/305 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK-PDLAFNVLH 59
           +A+L GG S+EREVS+ SG    +AL+   F V   D    +  ++      D+A  +LH
Sbjct: 6   LALLFGGASAEREVSILSGTQVLNALDKDRFIVRCYDPKIDIPRLVHDAPNIDVAVVMLH 65

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV----NR 115
           G +GEDG +Q +L++L+IPY  SG+L SA+SM K+ SKQ+    G+   P  +V      
Sbjct: 66  GEYGEDGRIQGLLDMLDIPYQGSGVLGSAVSMSKLASKQLYEQAGIKTPPYRVVSPDNRH 125

Query: 116 FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175
              +    +  P  +KP  GGSS+G+ ++K    +   L   + +     LL+E  V G+
Sbjct: 126 EAANLADQVGYPLFVKPCMGGSSIGMSLVKGPADLDKAL--DAGFAEDPVLLLEACVTGV 183

Query: 176 ELTCGVMGD---ASLDVTEIAVPKSD-FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           E+T  V+G+    +L + EI   +   F+ Y  KY +  S  + PA+I  +  ++   L+
Sbjct: 184 EITGAVLGNDELEALPLIEIVPGEEFAFFEYGAKYEAGKSEEICPARISEEGAQKAMDLS 243

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             AH+A+ C+G SR+D + D     +  LE N  PGMT  S+ P+ A  AG  F  L+  
Sbjct: 244 KQAHKALFCKGYSRTDMILDK-DGALHVLETNTIPGMTANSLLPKAAKVAGMDFTALMSR 302

Query: 292 MVEDA 296
           +V+ A
Sbjct: 303 LVDLA 307


>gi|325694085|gb|EGD36003.1| D-alanine-D-alanine ligase [Streptococcus sanguinis SK150]
          Length = 353

 Score =  296 bits (759), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 96/339 (28%), Positives = 161/339 (47%), Gaps = 44/339 (12%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQ--------------------------- 35
           +L GG S+EREVS+ S ++   A+    F V                             
Sbjct: 13  LLYGGRSAEREVSVLSAESVMRAVNYDRFSVKTYFITKDGDFIQTQEFEANPAADEKLMT 72

Query: 36  ---IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
              +D+ R +     +    + F VLHG  GEDG +Q  LE+L++PY    IL+S+L+MD
Sbjct: 73  NATVDMSRKIKPSDIYEDGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNILSSSLAMD 132

Query: 93  KMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           K+ +K+V+ S G+   P + +           + +  ++ P   KP   GSS+GI   + 
Sbjct: 133 KITTKRVLESAGIAQVPYVALVDGEDLEQKIQEIEEKLTYPVFTKPSNMGSSVGISKSEN 192

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYEL 204
              +   L    ++ +  ++L+EQ V   E+  G++G+  +  T     V    FY YE 
Sbjct: 193 QAELRASLDL--AFKYDSRVLVEQGVTAREIEVGLLGNVDVKSTLPGEVVKDVAFYDYEA 250

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           KY     T  +PAKIP ++   +++ A +A +A+G  G+SR DF +     +VF  E+N 
Sbjct: 251 KYIDNKITMDIPAKIPDEVVSLMRQNAEVAFRALGGLGLSRCDFFYVE-DGQVFLNELNT 309

Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMV---EDASCLR 300
            PG T  S++P +    G ++ +L+  +V   E+A   R
Sbjct: 310 MPGFTQWSMYPLLWENMGLAYPDLIEKLVGLAEEAFAKR 348


>gi|121635442|ref|YP_975687.1| D-alanine--D-alanine ligase [Neisseria meningitidis FAM18]
 gi|166198495|sp|A1KVL1|DDL_NEIMF RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|120867148|emb|CAM10915.1| D-alanine--D-alanine ligase B [Neisseria meningitidis FAM18]
 gi|325132970|gb|EGC55647.1| D-alanine--D-alanine ligase B [Neisseria meningitidis M6190]
 gi|325134891|gb|EGC57524.1| D-alanine--D-alanine ligase B [Neisseria meningitidis M13399]
 gi|325138958|gb|EGC61508.1| D-alanine--D-alanine ligase B [Neisseria meningitidis ES14902]
          Length = 304

 Score =  296 bits (759), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 104/299 (34%), Positives = 156/299 (52%), Gaps = 7/299 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSERE+SL SG A  +AL+  G      D   +    L       AFN+LHG
Sbjct: 7   VAVLMGGFSSEREISLDSGTAILNALKSKGIDAYAFDPKETPLSELKAQGFQTAFNILHG 66

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--M 118
            +GEDG VQ  LELL IPYT SG+ ASA+ MDK R K +  + G+PV    +++  T   
Sbjct: 67  TYGEDGAVQGALELLGIPYTGSGVAASAIGMDKYRCKLIWQALGLPVPEFAVLHDDTDFD 126

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
             +  +  P  +KP   GSS+G++ +K    +    +     +   +++ E+++ G E +
Sbjct: 127 AVEEKLGLPMFVKPAAEGSSVGVVKVKGKGRLKS--VYEELKHLQGEIIAERFIGGGEYS 184

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQA 237
           C V+    L    I +P ++FY YE KY+  ++ +  P   +       ++ LA    QA
Sbjct: 185 CPVLNGKGLPGIHI-IPATEFYDYEAKYNRNDTIYQCPSEDLTEAEESLMRELAVRGAQA 243

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           IG     R DF       K++ LEIN  PGMT  S+ P+ AA  G  F +L + +++ A
Sbjct: 244 IGAESCVRVDF-LKDTDGKLYLLEINTLPGMTSHSLVPKSAAVTGVGFADLCIEILKTA 301


>gi|229173269|ref|ZP_04300816.1| D-alanine--D-alanine ligase [Bacillus cereus MM3]
 gi|228610239|gb|EEK67514.1| D-alanine--D-alanine ligase [Bacillus cereus MM3]
          Length = 304

 Score =  296 bits (759), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 84/303 (27%), Positives = 159/303 (52%), Gaps = 9/303 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGG+SSE++VS+ +G    + L+   +++  I ++  + L+      D A   LHG
Sbjct: 3   IGVIMGGVSSEKQVSIMTGNEMIANLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117
            +GEDG VQ  LE L IPY+ S +L+S + MDK  SK+++   G+     I + +     
Sbjct: 63  KYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNISKKILRYEGIETPDWIELTKMADLN 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
           +D    +  P V+KP  GGSS+G+ ++     +    +  + +    +++IE+Y+ G E+
Sbjct: 123 LDELDKLGFPLVVKPNSGGSSVGVKIVYDKDELIS--MLETVFEWDSEVVIEKYIKGDEI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC +     L +  I    ++F+ Y  KY  +++   +  ++P ++ + V + +   ++A
Sbjct: 181 TCSIFDGKQLPIISIR-HAAEFFDYNAKYDDVSTIEEV-IELPAELKEHVNKASLACYKA 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           + C   +R D +        + +E+N  PGMT  S+ P+ A  AG  + +LL  ++E + 
Sbjct: 239 LKCSVYARVDMMV--KDGIPYVMEVNTLPGMTQASLLPKSADAAGIHYSKLLDMIIETSL 296

Query: 298 CLR 300
             R
Sbjct: 297 KAR 299


>gi|253581417|ref|ZP_04858643.1| D-alanine-D-alanine ligase [Fusobacterium varium ATCC 27725]
 gi|251836781|gb|EES65315.1| D-alanine-D-alanine ligase [Fusobacterium varium ATCC 27725]
          Length = 288

 Score =  296 bits (758), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 114/296 (38%), Positives = 163/296 (55%), Gaps = 14/296 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-SVGLVLAHLKPDLAFNVLH 59
           +AV MGGISSEREVSL+SGKA   +L   G+    IDV + ++       + D A+   H
Sbjct: 3   IAVFMGGISSEREVSLNSGKAILESLLKQGYDAYGIDVTKENLVSAFIENEYDFAYLAFH 62

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G FGEDG VQ +L++L  PYT SG  AS ++MDK+ +K++  S GV +  +         
Sbjct: 63  GGFGEDGRVQGLLDMLGKPYTGSGAEASGIAMDKIITKKLAESVGVRIAKNY------DK 116

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
              + S P VIKP   GSS+ I      +     + +      G +++IE+ + G ELT 
Sbjct: 117 VADIDSYPVVIKPALEGSSVEIFFCYNREEAEKAVAELK----GKKIVIEEMITGEELTV 172

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
           GV+    + V  I +PK++FY YE KY+   S H  PAKI    Y E    A   H  +G
Sbjct: 173 GVINGEGIGVLRI-IPKNEFYDYESKYAEGGSIHEYPAKIDKKAYDEALENAVKVHNVLG 231

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
             GISRSDF+      KV++LE+N  PGMT  S+ P++A   GY++ +++  MVE 
Sbjct: 232 LAGISRSDFIL--KDDKVYFLEVNTLPGMTKTSLIPDLATLKGYTYDDVVRIMVET 285


>gi|88800417|ref|ZP_01115982.1| D-alanylalanine synthetase [Reinekea sp. MED297]
 gi|88776864|gb|EAR08074.1| D-alanylalanine synthetase [Reinekea sp. MED297]
          Length = 359

 Score =  296 bits (758), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 77/350 (22%), Positives = 156/350 (44%), Gaps = 57/350 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLA------------- 47
           + ++ GG S+E +VSL S K+   A++   ++   I +      +L              
Sbjct: 7   VGIVFGGRSAEHQVSLQSAKSIIDAIDRTRYEPVLIGITEQGQWLLNDATDFLLNATDPK 66

Query: 48  ------------------------------HLKPDLAFNVLHGNFGEDGLVQAILELLEI 77
                                         + + D+ F VLHG +GEDG +Q +  L  +
Sbjct: 67  TIELNRQGQPVTLAAGDQRGSVIPTTQSPINAQVDVLFPVLHGPYGEDGSIQGLARLANL 126

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVIK 131
           P   SGIL SA+ MDK  +K+++   G+ V    +V    +        +  +  P  +K
Sbjct: 127 PCVGSGILGSAVGMDKDIAKRLLIHAGLNVADYEVVRNGQLTEALIERIETRLQYPVFVK 186

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+   +  +++   +  ++ +    ++L+E  V G E+ C V+G+ + + + 
Sbjct: 187 PANMGSSIGVSKAENREALITAVADAARF--DPKILVEALVVGREIECAVLGNDTPEASV 244

Query: 192 IAVPKSD----FYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRS 246
                ++    FY Y+ KY  +  +   +PA I  +  + ++ ++      + CRG++R 
Sbjct: 245 CGEIAANQTHAFYDYDAKYIDADGAVLSIPAAISDEASERIREISKQVFTTLECRGLTRV 304

Query: 247 DFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           D        +V   E+N  PG T +S++P++  ++G  + +L+  +++ A
Sbjct: 305 DVFLTDA-GEVVINEVNTIPGFTKISMYPKLWEHSGLPYPKLIDRLIQLA 353


>gi|157149874|ref|YP_001450726.1| D-alanyl-alanine synthetase A [Streptococcus gordonii str. Challis
           substr. CH1]
 gi|189083061|sp|A8AY66|DDL_STRGC RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|157074668|gb|ABV09351.1| D-Ala-D-Ala ligase [Streptococcus gordonii str. Challis substr.
           CH1]
          Length = 348

 Score =  296 bits (758), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 95/339 (28%), Positives = 162/339 (47%), Gaps = 44/339 (12%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQ--------------------------- 35
           +L GG S+EREVS+ S ++   A+    F V                             
Sbjct: 8   LLYGGRSAEREVSVLSAESVMRAINYDLFSVKTYFITKEGDFIKTQEFSSKPAEDVRLMT 67

Query: 36  ---IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
              +D+ R +     + +  + F VLHG  GEDG +Q  LE+L++PY    IL+S+L+MD
Sbjct: 68  NDTVDMSRKIKPSDIYEEGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNILSSSLAMD 127

Query: 93  KMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           K+ +K+V+ S G+   P + +           + +  +S P   KP   GSS+GI     
Sbjct: 128 KITTKRVLESAGIAQVPYVALVDGEDLEQKIQEIEEKLSYPVFTKPSNMGSSVGISKSDN 187

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYEL 204
            + +   L    ++ +  ++L+EQ V   E+  G++G+A +  +     V    FY Y+ 
Sbjct: 188 QEELRASLDL--AFKYDSRVLVEQGVTAREIEVGLLGNADVKSSLPGEVVKDVAFYDYQA 245

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           KY     T  +PA++P  +   +++ A +A +AIG  G+SR DF +     +VF  E+N 
Sbjct: 246 KYIDNKITMAIPAQLPEGVVNTMRQNAEIAFRAIGGLGLSRCDFFYTE-DGQVFLNELNT 304

Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMV---EDASCLR 300
            PG T  S++P +    G ++ +L+  +V   E+A   R
Sbjct: 305 MPGFTQWSMYPLLWENMGLAYPDLIEKLVALAEEAFAKR 343


>gi|11527846|gb|AAG37026.1|AF277571_3 D-alanine:D-lactate ligase [Enterococcus faecium]
 gi|27461217|gb|AAM09849.1| D-alanine:D-lactate ligase [Enterococcus faecium]
          Length = 343

 Score =  296 bits (758), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 81/335 (24%), Positives = 151/335 (45%), Gaps = 45/335 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           +AVL GG S E +VS+ S    A+ +    ++   I + +S    L              
Sbjct: 6   IAVLFGGCSEEHDVSVKSAMEVAANINKEKYQPFYIGITKSGAWKLCDKPCRDWENYAGY 65

Query: 47  ---------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
                                     D+   ++HG FGEDG +Q +LEL  IPY    I 
Sbjct: 66  PAVISPDRRIHGLLIQKDGGYESQPVDVVLPMIHGKFGEDGTIQGLLELSGIPYVGCDIQ 125

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145
           +S + MDK  +  VV + G+ V    ++ +        +S P  +KP + GSS G+  + 
Sbjct: 126 SSVICMDKSLAYMVVKNAGIEVPGFRVLQKGDSLEAETLSYPVFVKPARSGSSFGVNKVC 185

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYS 201
           + + +   + ++    +  ++L+E+ V G E+ C ++G+     + +V +I +    F  
Sbjct: 186 RAEELQAAVTEAG--KYDSKILVEEAVSGSEVGCAILGNGNDLITGEVDQIELKHGFFKI 243

Query: 202 Y---ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
           +   + +  S N+   +PA +P ++ +++Q  A   ++ +GCRG++R D         + 
Sbjct: 244 HQEAQPEKGSENAVIRVPAALPDEVREQIQETAKKIYRVLGCRGLARIDLFLRE-DGSIV 302

Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
             E+N  PG T  S +P M   AG++  E+L  ++
Sbjct: 303 LNEVNTMPGFTSYSRYPRMMTAAGFTLSEILDRLI 337


>gi|14719503|pdb|1E4E|A Chain A, D-Alanyl-D-Lacate Ligase
          Length = 343

 Score =  296 bits (758), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 85/335 (25%), Positives = 146/335 (43%), Gaps = 45/335 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +A+L GG S E +VS+ S    A+ +    ++   I + +S    +              
Sbjct: 6   VAILFGGCSEEHDVSVKSAIEIAANINKEKYEPLYIGITKSGVWKMCEKPCAEWENENCY 65

Query: 52  --------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
                                     D+AF+ LHG  GEDG +Q + EL  IP+    I 
Sbjct: 66  SAVLSPDKKMHGLLVKKNHEYEINHVDVAFSALHGKSGEDGSIQGLFELSGIPFVGCDIQ 125

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145
           +SA+ MDK  +  V  + G+      ++N+         + P  +KP + GSS G+  + 
Sbjct: 126 SSAICMDKSLTYIVAKNAGIATPAFWVINKDDRPVAATFTYPVFVKPARSGSSFGVKKVN 185

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD-ASLDVTEIAVPKSDFYSY-- 202
               +  D    S+  +  ++LIEQ V G E+ C V+G+ A+L V E+   +  +  +  
Sbjct: 186 SADEL--DYAIESARQYDSKILIEQAVSGCEVGCAVLGNSAALVVGEVDQIRLQYGIFRI 243

Query: 203 ----ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
               E +  S N+   +PA +  +    +Q      ++ +GCRG++R D      + ++ 
Sbjct: 244 HQEVEPEKGSENAVITVPADLSAEERGRIQETVKKIYKTLGCRGLARVDMFL-QDNGRIV 302

Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
             E+N  PG T  S +P M A AG S  EL+  ++
Sbjct: 303 LNEVNTLPGFTSYSRYPRMMAAAGISLPELIDRLI 337


>gi|328675328|gb|AEB28003.1| D-alanine--D-alanine ligase [Francisella cf. novicida 3523]
          Length = 296

 Score =  296 bits (758), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 104/297 (35%), Positives = 160/297 (53%), Gaps = 8/297 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-DRSVGLVLAHLKPDLAFNVLH 59
           + VL GG S EREVSL SGKA   +L   G+    +D   + +   L  LKPD  F  LH
Sbjct: 6   IVVLYGGDSPEREVSLKSGKAVLDSLISQGYDAVGLDASGKELVAKLLELKPDKCFVALH 65

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G  GE+G V A+LE+L I +T S + +S ++MDKM SK++     +P   +  +    + 
Sbjct: 66  GEDGENGRVSALLEMLGIKHTSSSMKSSVITMDKMISKEIWMHHRMPTPMAKFLT-AKLF 124

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
           ++  IS P  +KP  GGSS+    +K  Q +     ++S +    +++IEQ+V G E+T 
Sbjct: 125 AEDEISFPVAVKPSSGGSSIATFKVKSIQELKHAYEEASKY---GEVMIEQWVTGKEITV 181

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
            ++ D       I  P+++FY YE KYS   S +  P+ +      EV++LA  A+  +G
Sbjct: 182 AIVNDEVYSSVWIE-PQNEFYDYESKYS-GKSIYHSPSGLCEQKELEVRQLAKKAYDLLG 239

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           C G +R DF++D      + +EIN  PGMT  S+ P+ AA  G  F   +  ++E A
Sbjct: 240 CSGHARVDFIYDDRGN-FYIMEINSSPGMTENSLSPKSAAAEGVDFDSFVKRIIEQA 295


>gi|325128840|gb|EGC51699.1| D-alanine--D-alanine ligase B [Neisseria meningitidis N1568]
          Length = 304

 Score =  296 bits (758), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 104/299 (34%), Positives = 156/299 (52%), Gaps = 7/299 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSERE+SL SG A  +AL+  G      D   +    L       AFN+LHG
Sbjct: 7   VAVLMGGFSSEREISLDSGTAILNALKSKGIDAYAFDPKETPLSELKAQGFQTAFNILHG 66

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--M 118
            +GEDG VQ  LELL IPYT SG+ ASA+ MDK R K +  + G+PV    +++  T   
Sbjct: 67  TYGEDGAVQGALELLGIPYTGSGVAASAIGMDKYRCKLIWQALGLPVPEFAVLHDDTDFD 126

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
             +  +  P  +KP   GSS+G++ +K    +    +     +   +++ E+++ G E +
Sbjct: 127 AVEEKLGLPMFVKPAAEGSSVGVVKVKGKGRLKS--VYEELKHLQGEIIAERFIGGGEYS 184

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQA 237
           C V+    L    I +P ++FY YE KY+  ++ +  P   +       ++ LA    QA
Sbjct: 185 CPVLNGKGLPGIHI-IPATEFYDYEAKYNRDDTIYQCPSEDLTEAEESLMRELAVRGAQA 243

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           IG     R DF       K++ LEIN  PGMT  S+ P+ AA  G  F +L + +++ A
Sbjct: 244 IGAESCVRVDF-LKDTDGKLYLLEINTLPGMTSHSLVPKSAAVTGVGFADLCIEILKTA 301


>gi|322516239|ref|ZP_08069171.1| D-alanine-D-alanine ligase [Streptococcus vestibularis ATCC 49124]
 gi|322125303|gb|EFX96668.1| D-alanine-D-alanine ligase [Streptococcus vestibularis ATCC 49124]
          Length = 348

 Score =  296 bits (758), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 86/329 (26%), Positives = 157/329 (47%), Gaps = 41/329 (12%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL---------------- 46
           +L GG S+EREVS+ S ++   A++ + F+V    + +S   +                 
Sbjct: 8   LLYGGRSAEREVSVLSAESVMRAVDYSAFEVKTYFITQSGDFIKTQEFTETPGDDEKLMT 67

Query: 47  -------AHLKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
                    +KP        + F VLHG  GEDG +Q  LE L++PY  + +L+S+++MD
Sbjct: 68  NDTVVASQAIKPSDIYEEGAVVFPVLHGPMGEDGSIQGFLETLKLPYVGTNVLSSSVAMD 127

Query: 93  KMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           K+ +K ++   GVP     +            ++   ++ P  +KP   GSS+GI   + 
Sbjct: 128 KIMTKHILEVAGVPQVAYTVFIEGEDLESAVAETLEKLTFPVFVKPANMGSSVGISKAEN 187

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYEL 204
           +  +   +  +    +  ++LIEQ V   E+  G++G+ ++  T+    V    FY Y+ 
Sbjct: 188 EAELRAAIDLAL--KYDSRILIEQGVVAREIEVGILGNTTVKTTDPGEVVKDVAFYDYQA 245

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           KY     T  +PA +P ++  +++  A  A +A+G  G++R DF        ++  E+N 
Sbjct: 246 KYIDNKITMDIPAHVPAEVMAQMRAYAAKAFRALGGCGLARCDFFLTE-DGAIYLNELNT 304

Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            PG T  S++P +    G S+ +L+  +V
Sbjct: 305 MPGFTQWSMYPLLWENMGLSYSDLIKELV 333


>gi|229463107|gb|ACQ66105.1| D-alanine:D-lactate ligase [Enterococcus faecium]
          Length = 342

 Score =  296 bits (758), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 86/337 (25%), Positives = 148/337 (43%), Gaps = 44/337 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           +A++ GG S E +VS+ S    A+ ++   F    I + ++    L              
Sbjct: 6   VAIIFGGCSEEHDVSVKSAIEIAANIDTEKFDPHYIGITKNGVWKLCKKPCTEWEADSLP 65

Query: 47  --------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
                                  + D+AF VLHG  GEDG +Q + EL  IPY    I +
Sbjct: 66  AILSPDRKTHGLLVMKESEYETRRIDVAFPVLHGKCGEDGAIQGLFELSGIPYVGCDIQS 125

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           SA  MDK  +  +  + G+ V    ++++        ++ P  +KP + GSS G+  +  
Sbjct: 126 SAACMDKSLAYILTKNAGIAVPEFQMIDKGDKPEAGALTYPVFVKPARSGSSFGVTKVNG 185

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSY 202
            + +   +   ++  +  ++LIEQ + G E+ C VMG+       +V +I +    F  +
Sbjct: 186 TEELNAAI--EAAGQYDGKILIEQAISGCEVGCAVMGNEDDLIVGEVDQIRLSHGIFRIH 243

Query: 203 ---ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
              E +  S N+   +PA IP++    VQ  A   ++ +GCRG++R D         +  
Sbjct: 244 QENEPEKGSENAMITVPADIPVEERNRVQETAKKVYRVLGCRGLARVDLFLQE-DGGIVL 302

Query: 260 LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            E+N  PG T  S +P M A AG +   L+  ++  A
Sbjct: 303 NEVNTLPGFTSYSRYPRMMAAAGITLPALIDSLITLA 339


>gi|196230904|ref|ZP_03129765.1| D-alanine/D-alanine ligase [Chthoniobacter flavus Ellin428]
 gi|196225245|gb|EDY19754.1| D-alanine/D-alanine ligase [Chthoniobacter flavus Ellin428]
          Length = 315

 Score =  296 bits (758), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 116/306 (37%), Positives = 173/306 (56%), Gaps = 15/306 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG  SER+VSL+SG   A+AL   G  V+++DV+ S  +V A    D+AFNV+HG
Sbjct: 17  IAVLMGGPGSERKVSLASGAGVANALRTLGADVTEVDVNGSDFIVPA--GTDVAFNVIHG 74

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG +Q ILE   + YT  G+  S L++DK+ +KQ      VP     ++      +
Sbjct: 75  TFGEDGQIQRILESRGVAYTGEGVANSELAIDKIATKQCFQKHHVPTAAFEILRDG---A 131

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  PYV+K  K GSS+G+ +++  +   +      +W++G +LL+E +++G ELT G
Sbjct: 132 NPTLPLPYVVKAPKEGSSVGVFIVR--EEAKVADTMREAWSYGKELLVEDFINGRELTVG 189

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSS------LNSTHVLPAKIPLDIYKEVQRLAFLA 234
           V+GD +L + EI  P  DFY+++ KY          + H  PA I  ++ + VQ +A  A
Sbjct: 190 VLGDQALPIIEIK-PAKDFYNFDNKYPFLNPKAGGAAEHTCPAMISDELTRRVQEVALAA 248

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            +AI      R D L      + + LEIN  PGMT VS+ PE AA AG S+ EL   ++E
Sbjct: 249 ARAIHLETYCRVDVLLTGA-GEPYVLEINTIPGMTQVSLLPEAAAAAGISYAELCARVIE 307

Query: 295 DASCLR 300
            +   R
Sbjct: 308 LSLARR 313


>gi|170078193|ref|YP_001734831.1| D-alanyl-alanine synthetase A [Synechococcus sp. PCC 7002]
 gi|190359212|sp|B1XNQ0|DDL_SYNP2 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|169885862|gb|ACA99575.1| D-alanyl-D-alanine ligase [Synechococcus sp. PCC 7002]
          Length = 353

 Score =  296 bits (758), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 99/343 (28%), Positives = 160/343 (46%), Gaps = 49/343 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASAL----EDAGFKVSQIDVDRSVGL--------VLAH 48
           + +L GG S E +VS+ S  A A A         +++    +DR+           VL  
Sbjct: 6   VGLLFGGKSGEHDVSIVSAAAIAKAFAQEDNPDKYELLPFYIDRNGIWHDPEISQQVLTA 65

Query: 49  LK---------------------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87
            K                      D  F ++HG  GEDG +Q +L L+E P+  S +L S
Sbjct: 66  GKALPVETVDPASRWQFPPAAPSIDAWFPIVHGPNGEDGTLQGLLTLMEKPFVGSKVLGS 125

Query: 88  ALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------------QHLISPPYVIKPLKG 135
           A  MDK+  K V +  G+     + V R  + S            +  +  P  +KP   
Sbjct: 126 AAGMDKLAMKMVFAQAGLAQVDYVGVLRSEVWSGPCVFPKVCDKIEAQLDYPMFVKPANL 185

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195
           GSS+GI  ++    +   L  ++   +  +L++E  V   E+ C V+G+     + +   
Sbjct: 186 GSSVGISKVRTRDELEKALDLAA--EYDRRLIVEAGVTAREVECAVLGNDQPKASVVGEI 243

Query: 196 --KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
              SDFY YE KY+   S+  +PA+IP  I +++Q LA  A QA+ CRGI+R DF +   
Sbjct: 244 RFDSDFYDYETKYTDGKSSMHIPAEIPGAIAQQIQELAIKAFQALDCRGIARVDFFYVEA 303

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           ++ V   EIN  PG T +S++P++   +G  F +L+  +V+ A
Sbjct: 304 TQTVLINEINTLPGFTALSMYPQLWQQSGVPFPQLVDRLVQFA 346


>gi|161779899|gb|ABX79441.1| VanC1 [Enterococcus gallinarum]
          Length = 343

 Score =  296 bits (758), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 95/338 (28%), Positives = 166/338 (49%), Gaps = 45/338 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL-----VLAHLK----- 50
           +AVL GG S E  VSL+S ++   A+    ++V  I +  ++        LA+++     
Sbjct: 4   IAVLFGGNSPEYSVSLTSAESVIQAINPLKYEVMTIGIAPTMDWYWYQGNLANVRNDTWL 63

Query: 51  ------------------------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
                                   PD+ F VLHG +GEDG +Q +LEL+ +PY    + A
Sbjct: 64  EDHKNCHQLTFSSQGFILGEKRIVPDVLFPVLHGKYGEDGCIQGLLELMNLPYVGCHVAA 123

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIKPLKGGSSLG 140
           SAL M+K    Q+  + G+   P++L++R+  D   +         P  IKP + GSS G
Sbjct: 124 SALCMNKWLLHQLADTMGIASAPTLLLSRYENDPATIDRFIQDHGFPIFIKPNEAGSSKG 183

Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK--SD 198
           I  +    ++   L  ++++ +G  +LI++ + GIE+ CG++G+  L +           
Sbjct: 184 ITKVTDKTALQSAL--TTAFAYGSTVLIQKAIAGIEIGCGILGNEQLTIGACDAISLVDG 241

Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
           F+ +E KY  +++T  +PA +PL +  +++  A L ++ +G  G++R DF        ++
Sbjct: 242 FFDFEEKYQLISATITVPAPLPLALESQIKEQAQLLYRNLGLTGLARIDFFVTNQ-GAIY 300

Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             EIN  PG T  S +P M A  G S+  L+  ++  A
Sbjct: 301 LNEINTMPGFTGHSRYPAMMAEVGLSYEILVEQLIALA 338


>gi|332522758|ref|ZP_08399010.1| D-ala D-ala ligase N-terminal domain protein [Streptococcus
           porcinus str. Jelinkova 176]
 gi|332314022|gb|EGJ27007.1| D-ala D-ala ligase N-terminal domain protein [Streptococcus
           porcinus str. Jelinkova 176]
          Length = 348

 Score =  296 bits (758), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 94/334 (28%), Positives = 159/334 (47%), Gaps = 41/334 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---VLAHLKPD----- 52
           + +L GG S+EREVS+ S ++   A+    F V    + +S         + KP      
Sbjct: 6   LVLLYGGRSAEREVSVLSAESVMRAVNYDRFFVKTYFISQSGDFYKTQEWNQKPAETEKL 65

Query: 53  ----------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
                                 + F +LHG  GEDG +Q  LE+L++PY  + IL+S+++
Sbjct: 66  MTNQTIVADAQVKASDIYEEGAVVFPILHGPMGEDGSIQGFLEVLKMPYVGTNILSSSVA 125

Query: 91  MDKMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
           MDK+ +K+V+ S GVP     +      +     ++   +S P  +KP   GSS+GI   
Sbjct: 126 MDKITTKRVLESAGVPQVAYNVFIEGNSLEECIQETLTKLSFPMFVKPANMGSSVGISKA 185

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202
             +  +   +  +    +  ++LIEQ VD  E+  G++G+  +  T     V +  FY Y
Sbjct: 186 DSETELREAIQLAL--QYDSRILIEQGVDAREIEVGLLGNTDIASTLPGEVVKEVAFYDY 243

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
           + KY     T  +PA++  D+  +++  A  A +A+GC G+SR DF        ++  E+
Sbjct: 244 QAKYIDNKITMAIPAELETDLANKMRIYAENAFKALGCCGLSRCDFFLTK-DGFIYLNEL 302

Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           N  PG T  S++P +    G S+ EL+  +V  A
Sbjct: 303 NTMPGFTQWSMYPLLWENMGLSYPELIERLVILA 336


>gi|320533338|ref|ZP_08034032.1| D-ala D-ala ligase [Actinomyces sp. oral taxon 171 str. F0337]
 gi|320134453|gb|EFW26707.1| D-ala D-ala ligase [Actinomyces sp. oral taxon 171 str. F0337]
          Length = 388

 Score =  296 bits (758), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 88/365 (24%), Positives = 156/365 (42%), Gaps = 69/365 (18%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +AV+ GG S E  +S ++     SA++   ++V  + +      +L    P         
Sbjct: 21  VAVVFGGRSGEHTISCATAAGVLSAIDRDHYEVLPVGITPEGQWLLVEDDPAALELSDSR 80

Query: 52  --------------------------------------DLAFNVLHGNFGEDGLVQAILE 73
                                                 D+   +LHG +GEDG +Q +LE
Sbjct: 81  PPVTITADGLGRGTLTAPLGGGELTVLGPTGPQVLGRVDVVLPLLHGPYGEDGTIQGMLE 140

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--------DSQHLIS 125
           ++ +PY   G+LASA  MDK  +K ++ + G+   P ++V   T         ++   ++
Sbjct: 141 MMGLPYVGCGVLASAAGMDKQVTKVLLGAAGIATAPHVVVGPHTWKRDPEAILEACRSLT 200

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            P  +KP + GSSLGI  + + + +   +  + +     ++L+E  + G E+   V+   
Sbjct: 201 YPLFVKPARAGSSLGISKVDRPEDLRQAIEAARA--VDPKVLVESGIVGREVEVAVLQGR 258

Query: 186 SLDVTEIAVPK----------SDFYSYELKYSSLNST-HVLPAKIPLDIYKEVQRLAFLA 234
             D   +A P            +FY Y+ KY + ++   V PA+I  +    +   A  A
Sbjct: 259 DDDAPRVAEPGEIAMDASQGAGEFYDYDTKYLAHDAVAMVCPARIGPEARALIMDTAARA 318

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            +A+GC G++R DF        V   EIN  PG TP S++P M   +G  +  L+  ++E
Sbjct: 319 FEAVGCEGLARVDFFLTDSGEAV-VNEINTMPGFTPFSMYPYMWQVSGLDYTALVSELIE 377

Query: 295 DASCL 299
            A+  
Sbjct: 378 LAAAR 382


>gi|284992426|ref|YP_003410980.1| D-alanine/D-alanine ligase [Geodermatophilus obscurus DSM 43160]
 gi|284065671|gb|ADB76609.1| D-alanine/D-alanine ligase [Geodermatophilus obscurus DSM 43160]
          Length = 384

 Score =  295 bits (757), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 95/359 (26%), Positives = 156/359 (43%), Gaps = 67/359 (18%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           +AV+ GG S+E  +S  S  A  + L+   + V  + + R    VLA             
Sbjct: 10  IAVVFGGRSAEHSISCVSAGAVLAGLDPDRYDVVPVGIARDGRWVLAEPAQRLAIADGEL 69

Query: 49  ---------------------------------LKPDLAFNVLHGNFGEDGLVQAILELL 75
                                             + D+ F VLHG +GEDG +Q +LE+ 
Sbjct: 70  PEVTGGTAVSLVGDPGGRGLAVLEPAAGVASALTEVDVVFPVLHGAYGEDGTIQGLLEMS 129

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF-----------TMDSQHLI 124
            IPY  SG+ ASA SMDK  +K+++++ G+P    +++                  +  +
Sbjct: 130 GIPYVGSGVFASAASMDKEFTKKLLAAAGLPQGVHVVLRDASGAVSADPGVLDDADRERL 189

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG- 183
             P  +KP + GSS+GI  +      P  +  ++S     ++++E  V G E+ CGV+  
Sbjct: 190 GLPVFVKPCRAGSSIGITKVTDWAQFPEAVATAAS--VDPKVIVEAAVPGREVECGVLAR 247

Query: 184 -----DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
                 ASL       P +++Y +  KY        +PA +  +  + VQ  A  A  A+
Sbjct: 248 PDGPPQASLPAEIRLRPGTEWYDFAAKYLDDAVDFDVPADLTPEQTRLVQETARKAFLAL 307

Query: 239 GCRGISRSDFLFD---PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            CRG++R DF        + ++   E+N  PG TP+S++P M A  G  F  L+  +VE
Sbjct: 308 DCRGLARVDFFLGTGPDGADRLVVNEVNTMPGFTPISMYPRMWAATGVDFAALVDRLVE 366


>gi|7110137|gb|AAF36803.1|AF155139_2 putative D-alanyl-D-alanine ligase VanE [Paenibacillus popilliae]
          Length = 343

 Score =  295 bits (757), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 85/338 (25%), Positives = 154/338 (45%), Gaps = 45/338 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           +A+L GG S E +VS+ S K  A+ ++   ++   I + RS    +              
Sbjct: 6   IAILFGGCSEEHDVSVKSAKEIANNIDTEKYEPIYIGITRSGVWKMCEKPCMDWDNENCR 65

Query: 49  -----------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
                                   + D  F+VLHG  GEDG +Q + EL  IPY    + 
Sbjct: 66  SAVLSPDKKMHGLLVMRNKGYQIQRIDAVFSVLHGKSGEDGAIQGLFELSSIPYVGCDVQ 125

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145
           +SA+ MDK  +  V  + G      +++N   +   + ++ P  +KP + GSS G+  + 
Sbjct: 126 SSAVCMDKSLTYIVAQNAGFGTPEFLILNHGDIPDSNTLTYPVFVKPARSGSSFGVNKVN 185

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYS 201
            +  +  D    ++  +  ++LIEQ V G+E+ C V+G+       +V +I++    F  
Sbjct: 186 NEDEL--DAAIETARQYDSKVLIEQAVPGLEVGCAVLGNGTDLIVGEVDQISLSHGIFRI 243

Query: 202 Y---ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
           +   + +  S N+  ++PA +  +   ++Q  A   ++A+GC+G+SR D      + ++ 
Sbjct: 244 HQEDQPEKGSENAVVLVPANLSAEKRIKIQETAKAIYKALGCKGLSRVDMFLQE-NGRII 302

Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             E+N  PG T  S +P M A AG +   L+   +  A
Sbjct: 303 LNEVNTLPGFTAYSRYPRMMAAAGMTLSGLIDHCITLA 340


>gi|195977778|ref|YP_002123022.1| D-alanine--D-alanine ligase Ddl [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
 gi|226729273|sp|B4U1Z2|DDL_STREM RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|195974483|gb|ACG62009.1| D-alanine--D-alanine ligase Ddl [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
          Length = 348

 Score =  295 bits (757), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 93/332 (28%), Positives = 162/332 (48%), Gaps = 41/332 (12%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV----------------- 45
           +L GG S+EREVS+ S ++   A++   F V    + ++   +                 
Sbjct: 8   LLYGGRSAEREVSVLSAESVMRAIDYTKFFVKTYFISQTGQFIKTQEFSSQPAATERLMT 67

Query: 46  ------LAHLKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
                    ++P        + F VLHG  GEDG +Q  LE+L++PY  + IL+S+++MD
Sbjct: 68  NATIRLEQQIRPSDIYEEGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGTNILSSSVAMD 127

Query: 93  KMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           K+ +K+V+ S  +P     +      ++R   +++ ++S P  +KP   GSS+GI   + 
Sbjct: 128 KITTKRVLESADIPQVAYTVYIEGQDLDRCLAETEAVLSYPVFVKPANMGSSVGISKAES 187

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYEL 204
           ++ +   +L +    +  ++LIEQ V   E+  G++G+  +  T     V   DFY Y+ 
Sbjct: 188 EEELRAAILLAL--TYDSRILIEQGVLAREIEVGLLGNTDVKSTLPGEVVKNVDFYDYQA 245

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           KY     T  +PA I       ++  A  A +AIG  G+SR DF       +++  E+N 
Sbjct: 246 KYIDNEITMAIPAAIDESAMTSMRTYAETAFKAIGACGLSRCDFFL-GQDGQIYLNELNT 304

Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            PG T  S++P +  + G S+ EL+  +V  A
Sbjct: 305 MPGFTQWSMYPLLWEHMGLSYAELIEELVRLA 336


>gi|225868922|ref|YP_002744870.1| D-alanine--D-alanine ligase [Streptococcus equi subsp.
           zooepidemicus]
 gi|259645174|sp|C0MCV8|DDL_STRS7 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|225702198|emb|CAW99921.1| D-alanine--D-alanine ligase [Streptococcus equi subsp.
           zooepidemicus]
          Length = 348

 Score =  295 bits (757), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 93/332 (28%), Positives = 160/332 (48%), Gaps = 41/332 (12%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR---------------------- 40
           +L GG S+EREVS+ S ++   A++   F V    + +                      
Sbjct: 8   LLYGGRSAEREVSVLSAESVMRAVDYTKFFVKTYFISQTGQFIKTQEFSSRPTLTERLMT 67

Query: 41  -SVGLVLAHLKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
                +   ++P        + F VLHG  GEDG +Q  LE+L +PY  + IL+S+++MD
Sbjct: 68  NDTIRLEQQIRPSDIYEEGAVVFPVLHGPMGEDGSIQGFLEVLRMPYVGTNILSSSVAMD 127

Query: 93  KMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           K+ +K+V+ S G+P     +      ++R   +++  +S P  +KP   GSS+GI   + 
Sbjct: 128 KITTKRVLESAGIPQVAYTVYIEGQDLDRCLAETEAALSYPVFVKPANMGSSVGISKAES 187

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYEL 204
           ++ +   +L +    +  ++LIEQ V   E+  G++G+  +  T     V   DFY Y+ 
Sbjct: 188 EEELRAAILLAL--TYDSRILIEQGVLAREIEVGLLGNTDVKSTLPGEVVKNVDFYDYQA 245

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           KY     T  +PA I       ++  A  A +AIG  G+SR DF       +++  E+N 
Sbjct: 246 KYIDNEITMAIPATIDESAMTSMRIYAETAFKAIGACGLSRCDFFL-GQDGQIYLNELNT 304

Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            PG T  S++P +  + G ++ EL+  +V  A
Sbjct: 305 MPGFTQWSMYPLLWEHMGLNYAELIEELVRLA 336


>gi|45580843|emb|CAG15003.1| ligase [Actinoplanes teichomyceticus]
          Length = 345

 Score =  295 bits (757), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 92/338 (27%), Positives = 149/338 (44%), Gaps = 45/338 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           + ++ GG+S E  VS+ S +  A +L+   ++   I + +     L              
Sbjct: 6   IGIIFGGVSEEHPVSIKSAQEVAKSLDAEKYEPYWIGITKDGAWRLCDGPGADWEISSAR 65

Query: 47  ---------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
                                  ++ D+   VLHG  GEDG +Q + EL  IPY    + 
Sbjct: 66  PAMLSPDRNVHGLLVQEDGRYREIRLDVVLPVLHGKLGEDGAMQGLFELSGIPYVGCDVQ 125

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145
           +SA+ MDK  +  VVSS G+      +V          ++ P  +KP + GSS G+  + 
Sbjct: 126 SSAVCMDKSLTYAVVSSAGIAAATFWVVTPDEAPDPAQLTYPVFVKPARSGSSFGVTKVS 185

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYS 201
            +Q +   L  +  +    ++LIE+ V G E+ C +MG+     + +V  +A+    F  
Sbjct: 186 TEQELKAALETAREF--DSKVLIEEAVVGSEIGCAIMGNDPDLVAGEVDRVALSHGFFRI 243

Query: 202 Y---ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
           +   E +  S NST + PA IP +    VQ  A   ++A+GCRGI+R D         V 
Sbjct: 244 HQESEPERGSENSTFICPADIPAEARSLVQETAKAIYRALGCRGIARVDMFL-KEDGTVV 302

Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             E+N  PG+T  S +P M A AG     ++  +V  A
Sbjct: 303 LNEVNTLPGLTSYSRYPRMMAAAGIPLSAVIDQIVSLA 340


>gi|302870721|ref|YP_003839358.1| D-alanine/D-alanine ligase [Micromonospora aurantiaca ATCC 27029]
 gi|302573580|gb|ADL49782.1| D-alanine/D-alanine ligase [Micromonospora aurantiaca ATCC 27029]
          Length = 331

 Score =  295 bits (757), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 96/312 (30%), Positives = 150/312 (48%), Gaps = 18/312 (5%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62
           VL GG+S ER+VSL SG+    AL   G      D D ++   L    PD     LHG  
Sbjct: 23  VLAGGLSYERDVSLRSGRRVLDALRAVGVDAELRDADVALLPALTADPPDAVVIALHGAT 82

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ- 121
           GEDG ++ +L+L ++PY      +S L+ DK  +K V+   G+P    + +         
Sbjct: 83  GEDGSLRGVLDLWDVPYVGCDARSSRLAWDKPSAKAVLREAGIPTPDWVALPHDRFSELG 142

Query: 122 ---------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                      +  P ++KP +GGS LG  V+++  S+P  ++    + +    L+E+YV
Sbjct: 143 AVAVLDRIVDRLGLPLMVKPAQGGSGLGAAVVREAASLPAAMV--GCFAYDQTALVERYV 200

Query: 173 DGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
            G+++   V+    G  +L   EI VP++  Y Y  +Y++  +T   PA++       V 
Sbjct: 201 PGMDVAVSVLDLGKGPQALPPVEI-VPRNGVYDYAARYTAGRTTWHAPARLDAATTARVT 259

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
            +A  AH A+G R +SR D + D        LE+NV PGMT  S+ P     AG  F  +
Sbjct: 260 EVALAAHTALGLRDVSRVDLIVDA-GGDPHVLEVNVSPGMTETSLLPLAIQAAGLDFGRV 318

Query: 289 LLWMVEDASCLR 300
           L  +V  A+  R
Sbjct: 319 LGTLVTRAAARR 330


>gi|163814801|ref|ZP_02206190.1| hypothetical protein COPEUT_00952 [Coprococcus eutactus ATCC 27759]
 gi|158450436|gb|EDP27431.1| hypothetical protein COPEUT_00952 [Coprococcus eutactus ATCC 27759]
          Length = 350

 Score =  295 bits (757), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 94/344 (27%), Positives = 160/344 (46%), Gaps = 50/344 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           + V+ GG SSE EVS  S +  A A++   + ++ + + +    +               
Sbjct: 6   LVVIFGGRSSEHEVSCISVQTVAKAVDTEKYNMTLVGITKEGKWLRADNIESIADGSWRD 65

Query: 46  ----------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                 +   + D+ F VLHG +GEDG +Q + E+ +IPY   G
Sbjct: 66  GKVTAVISPDTTKELLILNGDKVERQRVDVIFPVLHGMYGEDGTIQGLFEMADIPYVGCG 125

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--------QHLISPPYVIKPLKG 135
           +LASA SMDK  +K +V + GV     + V               +  +  P  +KP K 
Sbjct: 126 VLASAASMDKFYTKIIVDNVGVRQAKFVPVLAEDFGDLDAAMDRVETGLDYPVFVKPSKA 185

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG---DASLDVTEI 192
           GSS G+      QS+   L ++  +   +++L+E+ + G EL CGV+G   +        
Sbjct: 186 GSSKGVNKAVDRQSLKSALEEAVKF--DNKILVEETIVGRELECGVLGYKDNTQASGVGE 243

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            +  ++FY ++ KY++  S  V+ A IP +I  E++  A    +A+   G+SR DF  + 
Sbjct: 244 ILAAAEFYDFDAKYNNAESKTVIGADIPAEIEAEIREDAVKIFRALDGFGLSRVDFFLEK 303

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            + KV + EIN  PG T +S++P +    GY   +L+  ++E A
Sbjct: 304 GTNKVVFNEINTLPGFTGISMYPMLWNAKGYDIGKLVTTLIEMA 347


>gi|119478634|ref|ZP_01618537.1| D-alanine-D-alanine ligase and related ATP-grasp enzyme [marine
           gamma proteobacterium HTCC2143]
 gi|119448411|gb|EAW29662.1| D-alanine-D-alanine ligase and related ATP-grasp enzyme [marine
           gamma proteobacterium HTCC2143]
          Length = 313

 Score =  295 bits (757), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 89/295 (30%), Positives = 146/295 (49%), Gaps = 7/295 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG ++ER VSL SG+A  +AL         +D      +     +    F  LHG
Sbjct: 19  VAVLLGGKTAERAVSLQSGEAILAALRAQNIAAEAVDTQDDSWIKTVAERYQHVFIALHG 78

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTM 118
             GE G VQ  L+ +++ YT SG++ASA+++DK+R K +     +P      + +N    
Sbjct: 79  GDGEGGSVQGALDSIDVTYTGSGVMASAIALDKVRCKYLWRGMELPTPSFCELSINSHWD 138

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           D         ++KP   GSS+G+ +      +      +S +     ++ EQ+V G E T
Sbjct: 139 DIIRQWGK-VIVKPASEGSSIGMAIATTGAELKGAYEIASQYQ--GAVMAEQWVQGAEFT 195

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             ++G  +L V  +      FY YE KY S ++ ++ P  +     +E++++A  A  ++
Sbjct: 196 VAILGKETLPVIRLETDH-GFYDYEAKYISTDTRYICPCGLSASQEQELKKMALDAFHSV 254

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           GC G  R DF+ D      F LE+N  PGMT  S+ P  A  A  +F EL+  ++
Sbjct: 255 GCEGWGRVDFMQDESDN-FFLLEVNTVPGMTDHSLVPMAAKEASVNFEELVAEIL 308


>gi|228992138|ref|ZP_04152074.1| D-alanine--D-alanine ligase [Bacillus pseudomycoides DSM 12442]
 gi|228767867|gb|EEM16494.1| D-alanine--D-alanine ligase [Bacillus pseudomycoides DSM 12442]
          Length = 304

 Score =  295 bits (757), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 92/303 (30%), Positives = 160/303 (52%), Gaps = 9/303 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGG+SSE++VSL +G+   + L+ + ++V  I ++    LV      D+A   LHG
Sbjct: 3   VGVIMGGVSSEKQVSLMTGEEMIAHLDKSKYEVVPIKLNDKKELVEKVRNLDIALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFT 117
            +GEDG +Q  LE L +PYT S +L+S + MDK  SK+++   G+     I +       
Sbjct: 63  EYGEDGTIQGTLETLGVPYTGSVMLSSGICMDKNMSKKMIRYEGIQTPDWIHLSNTEELQ 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
           +D    +  P V+KP  GGSS+G+ ++    S+   L     W    +++IE+Y+ G E+
Sbjct: 123 LDEIDKMGYPLVVKPNSGGSSVGVKIVYDKDSLLSSLEDVFKW--DSEIVIEKYIKGEEI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC ++    L +  I    ++F+ Y  KY  + +   +  ++P   Y+ V   A   ++A
Sbjct: 181 TCSILDGKLLPIISIQ-HTAEFFDYHAKYDDIATIEEV-VELPATTYERVVEAAMTCYRA 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           + C   +R D +        + +E+N  PGMT  S+ P+ A  AG S+ +LL  ++E + 
Sbjct: 239 LKCSVYARVDIII--KDGIPYVMEVNTLPGMTKNSLLPKSAHAAGISYSKLLDMIIETSL 296

Query: 298 CLR 300
            +R
Sbjct: 297 QVR 299


>gi|116072318|ref|ZP_01469585.1| D-alanine--D-alanine ligase [Synechococcus sp. BL107]
 gi|116064840|gb|EAU70599.1| D-alanine--D-alanine ligase [Synechococcus sp. BL107]
          Length = 350

 Score =  295 bits (757), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 93/343 (27%), Positives = 158/343 (46%), Gaps = 49/343 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALED----AGFKVSQIDVDRSVGL--------VLAH 48
           + ++ GG S E EVS+ S       L        ++V    +D+            VLA 
Sbjct: 8   IGLVFGGYSGEHEVSIRSAATVIHGLRSGENSQRYRVIPFYIDQEGRWWGETVANRVLAS 67

Query: 49  LKP----------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
            KP                      ++ + VLHG  GEDG VQ + +L+  P+  +G+L 
Sbjct: 68  QKPIDQSDPLKAKGFRGLPEGSETVEVWYPVLHGPNGEDGTVQGLFKLMRQPFVGAGVLG 127

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-----------QHLISPPYVIKPLKG 135
           SA+SMDK+  K   +  G+   P + +N   ++            +  +  P  +KP   
Sbjct: 128 SAVSMDKLAMKAAFTGAGLSQVPYVGLNATDLNDSIRREHVLDRIEAELHYPCFVKPANL 187

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195
           GSS+GI  +     +   L  ++      +L++EQ V   EL C V+G   L  + +   
Sbjct: 188 GSSVGISKVHNRYELEQGLDHAAQL--DPRLVVEQGVHARELECAVLGGHQLRSSVVGEV 245

Query: 196 --KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
              +D+Y Y  KY++  ST V+PA++P  + + VQ+ A  A  A+G  G++R DF +D  
Sbjct: 246 RFDADWYDYTTKYTAGLSTTVIPAELPEGVAERVQKQALEACSALGVTGMARVDFFYDDT 305

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             +++  EIN  PG T  S++P +   +G +  +L+  +V+ A
Sbjct: 306 KHQLWINEINTLPGFTSQSMYPMLWEASGVTLDQLVHKLVQSA 348


>gi|77412467|ref|ZP_00788770.1| D-alanine--D-alanine ligase [Streptococcus agalactiae CJB111]
 gi|77161485|gb|EAO72493.1| D-alanine--D-alanine ligase [Streptococcus agalactiae CJB111]
          Length = 348

 Score =  295 bits (757), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 95/332 (28%), Positives = 155/332 (46%), Gaps = 41/332 (12%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQ--------------------------- 35
           +L GG S+EREVS+ S ++   A+    F V                             
Sbjct: 8   LLYGGRSAEREVSVLSAESVMRAINYDKFFVKTYFITQVGQFIKTQEFDEMPSSDEKLMT 67

Query: 36  ---IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
              +D+D+ V     +    + F VLHG  GEDG +Q  LE+L +PY  + IL+S+++MD
Sbjct: 68  NQTVDLDKMVRPSDIYDDNAIVFPVLHGPMGEDGSIQGFLEVLRMPYVGTNILSSSVAMD 127

Query: 93  KMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           K+ +KQV+++ GVP            +      S   +S P  +KP   GSS+GI     
Sbjct: 128 KITTKQVLATVGVPQVAYQTYFEGDDLEHAIKLSLETLSFPIFVKPANMGSSVGISKATD 187

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYEL 204
           + S+   +  +    +  ++LIEQ V   E+  G++G+  +  T     V   DFY Y+ 
Sbjct: 188 ESSLRSAIDLAL--KYDSRILIEQGVTAREIEVGILGNNDVKTTFPGEVVKDVDFYDYDA 245

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           KY        +PAK+     + +++ A  A +AIG  G+SR DF       ++F  E+N 
Sbjct: 246 KYIDNKIIMDIPAKVDEATMEAMRQYASKAFKAIGACGLSRCDFFLTK-DGQIFLNELNT 304

Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            PG T  S++P +    G ++ +L+  +V  A
Sbjct: 305 MPGFTQWSMYPLLWENMGLTYSDLIEKLVMLA 336


>gi|317129522|ref|YP_004095804.1| D-alanine/D-alanine ligase [Bacillus cellulosilyticus DSM 2522]
 gi|315474470|gb|ADU31073.1| D-alanine/D-alanine ligase [Bacillus cellulosilyticus DSM 2522]
          Length = 371

 Score =  295 bits (757), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 84/347 (24%), Positives = 162/347 (46%), Gaps = 54/347 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           + ++ GG SSE ++SL S K+   A++   +++  I +D++    L              
Sbjct: 14  VGIIFGGKSSEHQISLQSAKSIIEAIDKNKYELVLIGIDKNGKWYLLDPNNYLRNMDNPK 73

Query: 49  ------------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIP 78
                                            D+ F +LHG++GEDG +Q +L L+  P
Sbjct: 74  LIEMIPSDQRVNIVLGEHDCFFTTPDGRSLGNIDVIFPILHGSYGEDGSIQGLLRLMGKP 133

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLISPPYVIKP 132
           +    +L SA+SMDK  SK+++S  G+ +       +           +  +  P  +KP
Sbjct: 134 FIGPSVLGSAVSMDKEVSKKLLSEAGLFIGKYFAYTKDRKGNIDYEKVKENLGTPVFVKP 193

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192
              GSS+GI  + + +   + + +  ++ + ++++IE+ + G E+ C V+G+     +  
Sbjct: 194 ANQGSSVGISKVYEKKKFYMAVDE--AFRYDNKIVIEEEIKGREIECAVLGNEDPIASLP 251

Query: 193 AVP--KSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
                   FYSY+ KY +S      +PA++  D  ++V++ A  A +A+ C G++R DF 
Sbjct: 252 GEVLFTDSFYSYDAKYINSGGVQLKVPAELDGDDVEKVKKEAIKAFKALQCNGVARVDFF 311

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                  +F  EIN  PG T +S++P++   +G  +++L+  M+  A
Sbjct: 312 LTKEGN-LFVNEINTLPGFTKLSMYPKLWEVSGLPYKDLVNKMIALA 357


>gi|312863893|ref|ZP_07724131.1| D-ala D-ala ligase N-terminal domain protein [Streptococcus
           vestibularis F0396]
 gi|311101429|gb|EFQ59634.1| D-ala D-ala ligase N-terminal domain protein [Streptococcus
           vestibularis F0396]
          Length = 348

 Score =  295 bits (757), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 86/329 (26%), Positives = 158/329 (48%), Gaps = 41/329 (12%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL---------------- 46
           +L GG S+EREVS+ S ++   A++ + F+V    + +S   +                 
Sbjct: 8   LLYGGRSAEREVSVLSAESVMRAVDYSAFEVKTYFITQSGDFIKTQEFTETPSDDEKLMT 67

Query: 47  -------AHLKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
                    +KP        + F VLHG  GEDG +Q  LE L++PY  + +L+S+++MD
Sbjct: 68  NDTVVASQAIKPSDIYEEGAVVFPVLHGPMGEDGSIQGFLETLKLPYVGTNVLSSSVAMD 127

Query: 93  KMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           K+ +K ++   GVP     +      +     ++   ++ P  +KP   GSS+GI   + 
Sbjct: 128 KIMTKHILEVAGVPQVAYTVYIEGEDLEAAVAETLEKLTFPVFVKPANMGSSVGISKAEN 187

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYEL 204
           +  +   +  +    +  ++LIEQ V   E+  G++G+ ++  T+    V    FY Y+ 
Sbjct: 188 EAELHAAIDLAL--KYDSRILIEQGVVAREIEVGILGNTTVKTTDPGEVVKDVAFYDYQA 245

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           KY     T  +PA +P ++  +++  A  A +A+G  G++R DF        ++  E+N 
Sbjct: 246 KYIDNKITMDIPAHVPAEVMTQMRAYAAKAFRALGGCGLARCDFFLTE-DGAIYLNELNT 304

Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            PG T  S++P +    G S+ +L+  +V
Sbjct: 305 MPGFTQWSMYPLLWENMGLSYSDLIKELV 333


>gi|327194156|gb|EGE61024.1| D-alanine-D-alanine ligase protein [Rhizobium etli CNPAF512]
          Length = 358

 Score =  295 bits (756), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 95/347 (27%), Positives = 159/347 (45%), Gaps = 51/347 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           +AVL GG S+E EVS+ S      AL    +    I + R    +L+             
Sbjct: 10  IAVLFGGRSAEHEVSILSATNVMRALAPEKYDAVPIFISREGQWLLSSFVDGALATPSSG 69

Query: 50  --------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                       D+ F VLHG +GEDG VQ + E+  +P    G
Sbjct: 70  TEICLVPGGRGRMMAIPTGGTPHDLPGIDILFPVLHGPYGEDGSVQGLAEVARVPLAGCG 129

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSL 139
           IL SA ++DK  +K+++ + G+PV  ++ V      S    +  +  P  IKP + GSS+
Sbjct: 130 ILGSAAALDKDIAKRLLRAAGLPVARAVTVRADAAPSLATLESELGLPLFIKPARQGSSV 189

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD-----VTEIAV 194
           G+  +   Q     L  + ++ H   LL E++V G E+   V+ DA+ D       EI  
Sbjct: 190 GVAKVHASQEFAPAL--AEAFRHDHTLLAEEFVAGREIEFSVLEDAAGDLFVSRPGEIVP 247

Query: 195 PKS-DFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            ++  FY+Y+ KY     +   +PA++P ++   ++ +A  A +A+GC G++R DF    
Sbjct: 248 AENHGFYNYDAKYVDENGAALKVPAELPPNVEAAMRDMAAKAFRAVGCDGMARVDFFLT- 306

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
              +    EIN  PG T +S++ +  A +G S+ E++  +V+     
Sbjct: 307 SDMRFLINEINTIPGFTDISMYSKAMAASGVSYAEVIDRLVDHGMAR 353


>gi|60391958|gb|AAX19284.1| D-alanine:D-lactate ligase [Paenibacillus thiaminolyticus]
          Length = 343

 Score =  295 bits (756), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 85/335 (25%), Positives = 152/335 (45%), Gaps = 45/335 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +A+L GG S E +VS+ S +  A+ +++  ++   I + +S    +              
Sbjct: 6   VAILFGGCSEEHDVSVKSAREIAANIDNEKYEPLYIGITKSGVWKMCEKPCAEWENSNCY 65

Query: 52  --------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
                                     D+AF+ +H   GEDG +Q + EL  IPY    I 
Sbjct: 66  SAVLSPDKKMHGLLVKKNHEYEIHHVDVAFSGMHSKSGEDGSIQGLFELSGIPYVGCDIQ 125

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145
           +SA+ MDK  +  +  + G+ +    ++N+    +    + P  +KP + GSS G+  + 
Sbjct: 126 SSAICMDKSLTYTIAKNAGIAIPEFWVINKDDKPAADTFTYPVFVKPARSGSSYGVKKVN 185

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS----LDVTEIAVPKSDFYS 201
               +  D    S+  +  ++LIEQ V G E+ C V+G++S     +V +I +    F  
Sbjct: 186 VADEL--DAAIESARQYDSKILIEQAVLGCEVGCAVLGNSSELIVGEVDQIRLQHGIFRI 243

Query: 202 Y---ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
           +   E +  S N+   +PA +  +    +Q  A   ++A+GCRG+SR D      + ++ 
Sbjct: 244 HQEAEPEKGSENAVITIPADLSAEERGRIQETAKKIYKALGCRGLSRVDMFL-QDNGRIV 302

Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
             E+N  PG T  S +P M A AG +  EL+  ++
Sbjct: 303 LNEVNTLPGFTSYSRYPRMMAAAGITLPELIDRLI 337


>gi|309813274|ref|ZP_07706990.1| D-ala D-ala ligase N-terminal domain protein [Dermacoccus sp.
           Ellin185]
 gi|308432770|gb|EFP56686.1| D-ala D-ala ligase N-terminal domain protein [Dermacoccus sp.
           Ellin185]
          Length = 373

 Score =  295 bits (756), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 91/363 (25%), Positives = 156/363 (42%), Gaps = 66/363 (18%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +AV+ GG SSE  +S ++     +A++   + V  I + ++   VL    P         
Sbjct: 10  VAVVFGGRSSEHAISCATAAGVLAAIDRERYDVVPIGISKAGQWVLMPDDPSVLAIQGKK 69

Query: 52  --------------------------------------DLAFNVLHGNFGEDGLVQAILE 73
                                                 D+   +LHG FGEDG +Q +LE
Sbjct: 70  LPEVTNDAGREVVIAPSPDQHDILVLDAGQTPQALTSVDVVLPLLHGPFGEDGTLQGLLE 129

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN----RFTMDSQ----HLIS 125
           L ++ Y  SG+ ASA+ MDK   K V  + G+PV P +++     R   D+       + 
Sbjct: 130 LADLRYVGSGVTASAVMMDKHMMKIVFEAAGLPVGPYVVITDKQWRRDKDAAMASLTPLR 189

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            P  +KP + GSS+GI  +     +   +    +     +++IE  + G E+ CGV+   
Sbjct: 190 YPVFVKPARAGSSVGISKVDSRDQLEAAI--ELARESDPKVVIEAGIVGREVECGVLEGH 247

Query: 186 SLDVTE-------IAVPKSDFYSYELKYSSLNS-THVLPAKIPLDIYKEVQRLAFLAHQA 237
             D+           + +  FY +E KY + +      PA +  +    ++ L+  A  A
Sbjct: 248 GSDLPRASELGEIEEIGEHAFYDFEAKYLNDDGLRLACPADVSAEDTARIKELSIKAFDA 307

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
            GC G++R D+ +      +F  EIN  PG TPVS+FP +   +G  + +L+  ++E A 
Sbjct: 308 AGCEGLARVDWFYTA-EGTLFLNEINTLPGFTPVSMFPAVWRESGLDYTDLITDLIELAR 366

Query: 298 CLR 300
             +
Sbjct: 367 ERK 369


>gi|332670956|ref|YP_004453964.1| D-alanine/D-alanine ligase [Cellulomonas fimi ATCC 484]
 gi|332339994|gb|AEE46577.1| D-alanine/D-alanine ligase [Cellulomonas fimi ATCC 484]
          Length = 390

 Score =  295 bits (756), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 103/362 (28%), Positives = 158/362 (43%), Gaps = 66/362 (18%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD-------- 52
           + VL GG S E  +S ++      AL+   + V  + +  +   VLA   PD        
Sbjct: 27  VMVLFGGRSGEHAISCATAGGVLRALDRDRYDVVAVGITPTGRWVLAEDDPDRWAIRDGR 86

Query: 53  --------------------------------------LAFNVLHGNFGEDGLVQAILEL 74
                                                 + F +LHG FGEDG +Q +LEL
Sbjct: 87  LPQVEDTAAHVLLPQATDDRDVQVLEPGTLPRTLGAVDVVFPLLHGPFGEDGTLQGMLEL 146

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ--------HLISP 126
            ++ Y  +G+LASA+ MDK   K V++  G+PV P  ++    ++            +  
Sbjct: 147 ADVRYVGAGVLASAVGMDKHMMKLVLAGHGLPVGPFTVILPGELERDPDEVARRVEKLGL 206

Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186
           P  +KP + GSSLGI  +     +P  L  + +  H  ++++E  V G E+ CGV+G   
Sbjct: 207 PLFVKPARAGSSLGITRVDDLADLPAALDAARA--HDPKVVVEAAVVGREIECGVLGGRD 264

Query: 187 LD------VTEIAV--PKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
                     EI V  P+  FY +E KY      T   PA +P D+  +V+ +A    +A
Sbjct: 265 GQRARASLPGEIVVTDPRHTFYDFEAKYLDEAGVTLACPADLPADVVAQVRDVAVRTFEA 324

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           IGC GI+R D    P   +V   EIN  PG TP S++P M    G  + +L+  +V+ A 
Sbjct: 325 IGCEGIARVDVFVTP-DGEVVVNEINTMPGFTPYSMYPRMWEATGLPYPQLVDELVQLAL 383

Query: 298 CL 299
             
Sbjct: 384 AR 385


>gi|312871251|ref|ZP_07731349.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus iners
           LEAF 3008A-a]
 gi|311093265|gb|EFQ51611.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus iners
           LEAF 3008A-a]
          Length = 361

 Score =  295 bits (756), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 92/345 (26%), Positives = 163/345 (47%), Gaps = 48/345 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------DRSVGLVLA----- 47
           + ++ GG SSE EVS+ SG+    A++   + V  + +        D     VL      
Sbjct: 7   VGLIFGGNSSEYEVSIISGRNIYKAIDKEKYDVYPMWITNTGFLASDADSRKVLEDPTYQ 66

Query: 48  ------------------HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
                               + D+ F ++HGN GEDG +Q +L +L+ P+    +LA+A+
Sbjct: 67  IENPRTVTNISNVIELSNRPEIDVFFPIVHGNLGEDGCLQGLLRILDKPFVGDDVLAAAI 126

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ-----------HLISPPYVIKPLKGGSS 138
           +MDK  +K +    GVPV   I + RF  D+              +     +KP   GSS
Sbjct: 127 TMDKELNKIMAQRAGVPVAKWISIKRFEYDNAKNEKLSYDYVSQQLGTDLFVKPSNQGSS 186

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVP 195
           +GI  +         L  + ++ + D++L+E+ + G E+   V+G+    V+   +I   
Sbjct: 187 VGISHVTSAADYEKAL--AEAFKYDDKVLVEETIKGTEVETAVLGNDDAIVSGVGQITNA 244

Query: 196 KSDFYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
           +  +YSYE KY+  +++ +  PA +P +I K V+  A   + A  C G++R D +     
Sbjct: 245 QGSWYSYENKYNDNSTSKLQIPADLPAEIVKTVRSQALKVYHATECSGLARVDSMLTTDG 304

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
            KV + E+N  PG T +S++P++   AG  + EL+  +++ A   
Sbjct: 305 HKVIFNELNALPGFTNISMYPKLFEEAGIPYAELITKLLDYAVAR 349


>gi|108805132|ref|YP_645069.1| D-alanine--D-alanine ligase [Rubrobacter xylanophilus DSM 9941]
 gi|108766375|gb|ABG05257.1| D-alanine--D-alanine ligase [Rubrobacter xylanophilus DSM 9941]
          Length = 318

 Score =  295 bits (756), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 95/311 (30%), Positives = 162/311 (52%), Gaps = 20/311 (6%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S ER+VSL++G+    ALE  G +V  +DV+ +    L  L+P   F  LHG
Sbjct: 4   LAVLRGGHSMERDVSLATGRRVQHALERLGHEVHPMDVEETTTERLIELEPAAVFVCLHG 63

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG VQA+LE L IPYT SG L+S   MDK  +K+ +++ G+P        R  M+ 
Sbjct: 64  PGGEDGTVQALLETLGIPYTGSGPLSSIRCMDKDYAKRALAAAGLPTPRFCTFVRRAMNE 123

Query: 121 Q----------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                        +  P V+KP + GSS G+  +++ + +   + +  ++ +  ++L+E+
Sbjct: 124 MGAAAALNVAADSLGYPLVVKPAREGSSFGLSRVERPEELLDAVYE--AFGYDAKILLER 181

Query: 171 YVDGIELTCGVMG-----DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
           +V+G E++  ++        +L + EI  P+   Y+++ KY+   +   +PA++P     
Sbjct: 182 WVEGREVSVPILEPAGEAPRALGLVEIR-PREGAYNFQAKYTPGMTDFAIPAELPPGTAS 240

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285
            ++  A   ++ +GC G +R D +          L++   PG T  S FP  A  AG SF
Sbjct: 241 RLEETALAVYRTLGCSGFARVDTIV--EGETPQVLDVKTIPGFTETSTFPLAAEAAGLSF 298

Query: 286 RELLLWMVEDA 296
             L+  +++ A
Sbjct: 299 ERLVEIILDSA 309


>gi|254967027|gb|ACT97549.1| putative D-alanine-D-alanine ligase [uncultured organism]
          Length = 343

 Score =  295 bits (756), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 106/337 (31%), Positives = 158/337 (46%), Gaps = 46/337 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------------DRSVGLV 45
           + VL GG S ER+VSL SG   A++L  +G  V+  DV               D +    
Sbjct: 7   ITVLAGGFSPERDVSLLSGALIANSLCRSGHLVALTDVFYPYRGALSDDAFTSDGNFMYT 66

Query: 46  LAHLKPD--------------------------LAFNVLHGNFGEDGLVQAILELLEIPY 79
           +    PD                          + F  LHG  GEDG +QA L  + IPY
Sbjct: 67  VPKEPPDLKALRAEVPGSALIGDGVLELCRLSDIVFLALHGGMGEDGSIQAALSSMGIPY 126

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSL 139
           T S   A  ++MDK  SK +  + G+P     L+ +   DS   I  P V+KP   GSS+
Sbjct: 127 TGSDFAACLVAMDKSLSKLLFRAHGIPTADFTLLKKG--DSTDGIPLPCVVKPCSCGSSV 184

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDF 199
           G+ ++   +++   L   +++ + +++L E  + G E + GV+   +L   EI  PK  F
Sbjct: 185 GVSIVDTKEALAGAL--ETAYQYEEKVLAEDKICGREFSVGVLLGRALPAIEIR-PKDGF 241

Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
           Y YE KY S  +  + PA +P      +  LA   H+A+G    SR DF+ +  + K   
Sbjct: 242 YDYERKYQSGMTEEICPADLPEAEAASLGALALKVHRALGLGSYSRIDFIREEKTGKFIC 301

Query: 260 LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           LE N  PGMTP+S+ P+ AA AG  +  L L + + A
Sbjct: 302 LEANTLPGMTPMSLLPQEAAAAGIGYDALCLAIAQAA 338


>gi|298528065|ref|ZP_07015469.1| D-alanine/D-alanine ligase [Desulfonatronospira thiodismutans
           ASO3-1]
 gi|298511717|gb|EFI35619.1| D-alanine/D-alanine ligase [Desulfonatronospira thiodismutans
           ASO3-1]
          Length = 300

 Score =  295 bits (756), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 94/295 (31%), Positives = 152/295 (51%), Gaps = 7/295 (2%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-AHLKPDLAFNVLHGN 61
           ++ GG S ER+VSL+       AL+  G +V  +D+      ++    + D A   LHG 
Sbjct: 5   LIAGGWSKERQVSLNGAAQIKEALKSLGHEVLFLDLSPDYQELVNKAREADAAIINLHGA 64

Query: 62  FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ 121
            GEDG +Q +LE + +PY  SG+  S L+++K  SKQ  ++ G+      L   F     
Sbjct: 65  PGEDGSIQGVLEDVGLPYQGSGVRGSFLALNKALSKQFYANHGLRTPKGGLY--FPQGRL 122

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
           H + PP + KP +GGSSL + +    + +   L Q    +   ++L+E+ ++G E++C V
Sbjct: 123 HHVPPPVICKPNQGGSSLDMQIFYNQEEMYSFLNQV---DSEHEILVEELINGHEVSCAV 179

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241
           + +  L    I   K DF+ Y  KY    +  + PA I  +  + +Q ++  AH+ +G R
Sbjct: 180 LDNEPLPPILIQPVKGDFFDYNSKYDPDGAVEICPAPISQEASRSIQEMSLQAHRILGLR 239

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             SRSDF+ D     ++ LE N  PGMT  S+ P+ A  AG  F EL+  ++  A
Sbjct: 240 HYSRSDFMLDQQDN-IYILETNTLPGMTRTSLVPKAAQQAGIGFTELIARLLSLA 293


>gi|254967034|gb|ACT97553.1| putative D-alanine-D-alanine ligase [uncultured organism]
 gi|254967054|gb|ACT97564.1| putative D-alanine-D-alanine ligase [uncultured organism]
          Length = 367

 Score =  295 bits (756), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 97/340 (28%), Positives = 162/340 (47%), Gaps = 52/340 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------------------- 38
           + VL GG S+ER++S+ +      +L   G+  + +DV                      
Sbjct: 27  IVVLAGGTSTERDISILTSTKVCESLRRNGYNANIVDVFFGIDSENVDNFFNNDNDLEKL 86

Query: 39  -------DRSVGLVLAH-----------------LKPDLAFNVLHGNFGEDGLVQAILEL 74
                     V   L                    K D+ F  LHG+ GEDG +QA  EL
Sbjct: 87  CKYLKNQTPDVEKELEARKALGKGFFGDNVLELCQKADIVFMGLHGSNGEDGKIQAAFEL 146

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLK 134
           + I YT +  ++SA+SM K  +K+V+   G+P+   I +++        +  P V+KP  
Sbjct: 147 MGIKYTGTDYISSAISMSKELTKKVLVPEGIPMPKGIALHKGH--KVEYVPFPCVVKPCC 204

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194
           GGSS+G+ ++  ++     L  + ++++ D +L+E+++ G E + GV+   +L V EI  
Sbjct: 205 GGSSVGVSIVNSEEEFKRAL--TDAFSYEDNILVEEFIKGREFSVGVLNGKALPVIEIE- 261

Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
           P   FY Y+ KY +  +    PA +P +I +++QR A  A +  G    +R D L +   
Sbjct: 262 PLDGFYDYKNKYKAGATKETCPANLPKEISEKMQRWAEKACETAGVTTYARVDELLNE-D 320

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             ++ LEIN  PGMT  S+ P+ AA  G S+ EL   ++E
Sbjct: 321 GDIYCLEINTLPGMTGTSLLPQEAAAVGMSYDELTKKIIE 360


>gi|255020016|ref|ZP_05292089.1| D-alanine--D-alanine ligase B [Acidithiobacillus caldus ATCC 51756]
 gi|254970545|gb|EET28034.1| D-alanine--D-alanine ligase B [Acidithiobacillus caldus ATCC 51756]
          Length = 298

 Score =  295 bits (756), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 104/294 (35%), Positives = 158/294 (53%), Gaps = 16/294 (5%)

Query: 15  SLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILE 73
           SL+S  A   ALE AG +V  ID++ + +   LA    +  FNV HG FGEDG++QA LE
Sbjct: 2   SLASAAAVRRALEAAGVRVVAIDIEPQRIQEQLAQSGAEFVFNVCHGQFGEDGVLQACLE 61

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR-----------FTMDSQH 122
              +PYT SG+LASAL+MDK RSK++  + G+P      + R            + D  H
Sbjct: 62  ASGLPYTGSGVLASALAMDKWRSKRLWQAAGLPTTRGQWLQREHVTGGSPCGQSSADELH 121

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
           +   P  +KP + GSSLGI  ++    +   + +  ++    ++L+E+ VDG+E T G++
Sbjct: 122 IARWPVFVKPNRAGSSLGISRVENAAGLAEAMAK--AFAVDSEILVEEAVDGLEATVGIV 179

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
              +L    I  P   FY YE KY + ++ ++LP+ +P    + +Q LA  A + +G R 
Sbjct: 180 AGRTLPPIVIR-PHRAFYDYEAKYLADDTEYLLPSGLPTATERRLQELALQAFRELGGRD 238

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             R DFL D     +  LE+N  PGMT  S+ P  A   G++  +L L +V  A
Sbjct: 239 WGRVDFLVDAEGG-IHLLELNAVPGMTDHSLVPMAARALGWTMTKLCLEIVSTA 291


>gi|309806919|ref|ZP_07700903.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus iners
           LactinV 03V1-b]
 gi|309807354|ref|ZP_07701321.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus iners
           LactinV 01V1-a]
 gi|312872728|ref|ZP_07732793.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus iners
           LEAF 2062A-h1]
 gi|312874059|ref|ZP_07734094.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus iners
           LEAF 2052A-d]
 gi|308166686|gb|EFO68881.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus iners
           LactinV 03V1-b]
 gi|308169403|gb|EFO71454.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus iners
           LactinV 01V1-a]
 gi|311090399|gb|EFQ48808.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus iners
           LEAF 2052A-d]
 gi|311091770|gb|EFQ50149.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus iners
           LEAF 2062A-h1]
          Length = 361

 Score =  295 bits (756), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 91/345 (26%), Positives = 162/345 (46%), Gaps = 48/345 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------DRSVGLVLA----- 47
           + ++ GG SSE EVS+ SG+    A++   + V  + +        D     VL      
Sbjct: 7   VGLIFGGNSSEYEVSIISGRNIYKAIDKEKYDVYPMWITNTGFLASDADSRKVLEDPTYQ 66

Query: 48  ------------------HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
                               + D+ F ++HGN GEDG +Q +L +L+ P+    +LA+A+
Sbjct: 67  IENPRTVTNISNVIELSNRPEIDVFFPIVHGNLGEDGCLQGLLRILDKPFVGDDVLAAAI 126

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ-----------HLISPPYVIKPLKGGSS 138
           +MDK  +K +    GVPV   I + RF  D               +     +KP   GSS
Sbjct: 127 TMDKELNKIMAQRAGVPVAKWISIKRFEYDDAKNEKLSYDYVSQQLGTDLFVKPSNQGSS 186

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVP 195
           +GI  +         L  + ++ + D++L+E+ + G E+   V+G+    V+   +I   
Sbjct: 187 VGISHVTSAADYEKAL--AEAFKYDDKVLVEETIKGTEVETAVLGNDDAIVSGVGQITNA 244

Query: 196 KSDFYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
           +  +YSYE KY+  +++ +  PA +P +I + V+  A   + A  C G++R D +     
Sbjct: 245 QGSWYSYENKYNDNSTSKLQIPADLPAEIVETVRSQALKVYHATECSGLARVDSMLTTDG 304

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
            KV + E+N  PG T +S++P++   AG  + EL+  +++ A   
Sbjct: 305 HKVIFNELNALPGFTNISMYPKLFEEAGIPYAELITKLLDYAVAR 349


>gi|229075051|ref|ZP_04208053.1| D-alanine--D-alanine ligase [Bacillus cereus Rock4-18]
 gi|229103218|ref|ZP_04233903.1| D-alanine--D-alanine ligase [Bacillus cereus Rock3-28]
 gi|228680242|gb|EEL34434.1| D-alanine--D-alanine ligase [Bacillus cereus Rock3-28]
 gi|228708108|gb|EEL60279.1| D-alanine--D-alanine ligase [Bacillus cereus Rock4-18]
          Length = 304

 Score =  295 bits (756), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 86/303 (28%), Positives = 161/303 (53%), Gaps = 9/303 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGG+SSE++VS+ +G    + L+   +++  I ++  + L+      D A   LHG
Sbjct: 3   IGVIMGGVSSEKQVSIMTGNEMIAHLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117
            +GEDG VQ  LE L IPY+ S +L+S + MDK  SK+++   GV     I + +     
Sbjct: 63  KYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNISKKILRYEGVETPDWIELTKMADLK 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
           +D    +  P V+KP  GGSS+G+ ++     +    +  + +    +++IE+Y+ G E+
Sbjct: 123 LDDLDKLGFPLVVKPNSGGSSVGVKIVNDKNELIS--MLETVFEWDSEVVIEKYIKGDEI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC +     L +  I    ++F+ Y  KY  +++   +  ++P +I + V + +   ++A
Sbjct: 181 TCSIFDGKQLPIVSIR-HAAEFFDYNAKYDDVSTIEEV-IELPTEIKERVNKASLACYKA 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           + C   +R D +        + +E+N  PGMT  S+ P+ A  AG ++ +LL  ++E + 
Sbjct: 239 LKCSVYARVDMMV--KDGIPYVMEVNTLPGMTQSSLLPKSADAAGINYSKLLDMIIETSL 296

Query: 298 CLR 300
            +R
Sbjct: 297 RVR 299


>gi|322385093|ref|ZP_08058740.1| D-alanine-D-alanine ligase [Streptococcus cristatus ATCC 51100]
 gi|321270717|gb|EFX53630.1| D-alanine-D-alanine ligase [Streptococcus cristatus ATCC 51100]
          Length = 348

 Score =  295 bits (756), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 93/339 (27%), Positives = 158/339 (46%), Gaps = 44/339 (12%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQ--------------------------- 35
           ++ GG S+EREVS+ S ++   A+    F V                             
Sbjct: 8   LIYGGRSAEREVSVLSAESVMRAVNYDKFSVKTYFITKAGDFIKTQEFTEKPAADEKLMT 67

Query: 36  ---IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
              +DV + V     + +  + F VLHG  GEDG +Q  LE+L +PY    IL+S+++MD
Sbjct: 68  NATVDVSQQVKPSDIYEENAVVFPVLHGPMGEDGSIQGFLEVLRLPYVGCNILSSSVAMD 127

Query: 93  KMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           K+ +K+++ S G+P  P + V           + +  ++ P   KP   GSS+GI   + 
Sbjct: 128 KITTKRILESAGIPQVPYVAVIEGENLEEKIAEIEEKLTYPIFTKPSNMGSSVGISKSEN 187

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYEL 204
            + +   L    ++ +  ++LIEQ V+  E+  G++G+  +  T     V    FY YE 
Sbjct: 188 QEELRAALDL--AFKYDSRVLIEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDYEA 245

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           KY     T  +P KI   +   ++  A  A +A+G +G++R DF +      +F  E+N 
Sbjct: 246 KYIDNKITMDIPVKISDGVISVMRTNAETAFRALGGQGLARCDFFYTE-EGDIFLNELNT 304

Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMV---EDASCLR 300
            PG T  S++P +    G  + +L+  +V   E+A   R
Sbjct: 305 MPGFTQWSMYPLLWENMGLPYSDLIEKLVNLAEEAFAQR 343


>gi|303258234|ref|ZP_07344241.1| D-alanine--D-alanine ligase B [Burkholderiales bacterium 1_1_47]
 gi|302858987|gb|EFL82071.1| D-alanine--D-alanine ligase B [Burkholderiales bacterium 1_1_47]
          Length = 313

 Score =  295 bits (756), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 111/303 (36%), Positives = 160/303 (52%), Gaps = 10/303 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AV+MGG S EREVSL SG     AL+  G  V + D        LA    D AF +LHG
Sbjct: 12  IAVVMGGSSGEREVSLMSGSGVLKALQSVGADVVKFDPAEQPLSDLA--GIDRAFLILHG 69

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--M 118
             GEDG++Q ++E L+IPYT SG+ ASA+ +DK  +K V  + G+PV   +++   T   
Sbjct: 70  KGGEDGVIQGVMEFLKIPYTGSGVQASAIGIDKEMTKAVWEAQGIPVPRGMVLRNETDCE 129

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           ++    +   VIKP K GSSLG+  +K      +    + S   G  +L E+YV G ELT
Sbjct: 130 EAHRRFNGNLVIKPSKEGSSLGLYKLKNATVDQVKEAFAKSQEAGMTVLAEEYVFGRELT 189

Query: 179 CGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
             V+    G  +  + EI  P  D Y +E KY S  + +V PA++P ++ ++++ +   A
Sbjct: 190 VAVLDMGEGLKAFPIIEIKAPDGD-YDFEHKYFSDETVYVCPAEVPENVTEKIKAVVEKA 248

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             A+G    SR D +          LEIN  PGMTP S+ P  A   G S+ EL+  +  
Sbjct: 249 ALAVGADAWSRIDVILR-DDGSFVLLEINTAPGMTPHSLVPLAARTCGISYEELVKQVAA 307

Query: 295 DAS 297
            AS
Sbjct: 308 RAS 310


>gi|315506958|ref|YP_004085845.1| d-alanine/d-alanine ligase [Micromonospora sp. L5]
 gi|315413577|gb|ADU11694.1| D-alanine/D-alanine ligase [Micromonospora sp. L5]
          Length = 331

 Score =  295 bits (756), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 96/312 (30%), Positives = 150/312 (48%), Gaps = 18/312 (5%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62
           VL GG+S ER+VSL SG+    AL   G      D D ++   L    PD     LHG  
Sbjct: 23  VLAGGLSYERDVSLRSGRRVLDALRAVGVDAELRDADVALLPALTADPPDAVVIALHGAT 82

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ- 121
           GEDG ++ +L+L ++PY      +S L+ DK  +K V+   G+P    + +         
Sbjct: 83  GEDGSLRGVLDLWDVPYVGCDARSSRLAWDKPSAKAVLREAGIPTPDWVALPHDRFSELG 142

Query: 122 ---------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                      +  P ++KP +GGS LG  V+++  S+P  ++    + +    L+E+YV
Sbjct: 143 AVAVLDRIVDRLGLPLMVKPAQGGSGLGAAVVREAASLPAAMV--GCFAYDQTALVERYV 200

Query: 173 DGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
            G+++   V+    G  +L   EI VP++  Y Y  +Y++  +T   PA++       V 
Sbjct: 201 PGMDVAVSVLDLGKGPQALPPVEI-VPRNGVYDYAARYTAGRTTWHAPARLDAATTARVT 259

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
            +A  AH A+G R +SR D + D        LE+NV PGMT  S+ P     AG  F  +
Sbjct: 260 EVALAAHTALGLRDVSRVDLIVDA-GGDPHVLEVNVSPGMTETSLLPLAIQAAGLDFGRV 318

Query: 289 LLWMVEDASCLR 300
           L  +V  A+  R
Sbjct: 319 LGTLVTRAAARR 330


>gi|115372760|ref|ZP_01460066.1| D-alanine--D-alanine ligase [Stigmatella aurantiaca DW4/3-1]
 gi|115370241|gb|EAU69170.1| D-alanine--D-alanine ligase [Stigmatella aurantiaca DW4/3-1]
          Length = 280

 Score =  295 bits (756), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 104/281 (37%), Positives = 159/281 (56%), Gaps = 9/281 (3%)

Query: 22  CASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81
            A AL   G+ V +IDV + V   L   K D+A+  LHG +GEDG +Q +LE L IPYT 
Sbjct: 1   MAKALRSLGYDVVEIDVGKDVAARLTAEKVDVAWLALHGRYGEDGSIQGLLESLFIPYTG 60

Query: 82  SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL----ISPPYVIKPLKGGS 137
           SG+LASA+ MDK+ +K + ++ G+P  P       T   +       S P V+KP + GS
Sbjct: 61  SGVLASAVGMDKVYAKWIFTTHGIPTPPYKTFKDATSAREAADTLPFSYPVVVKPSREGS 120

Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKS 197
           S+G+ V K  ++    +  ++   +   LL+EQ++ G E+   V+ D +L V E+ V + 
Sbjct: 121 SVGVHVCKTKEAYLAAVEDAA--RYAGTLLVEQFIPGREVQGAVLDDEALGVIEVVVAR- 177

Query: 198 DFYSYELKYSSLN-STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256
           +FY +  KY+S + + ++ PA +P D Y+ V  +   AH+A+GC+G SRSD +       
Sbjct: 178 EFYDHTAKYTSGSGTKYLFPAPLPADQYERVNAVCLAAHRALGCQGASRSDVIITE-GGD 236

Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           VF LE N  PGMT  S+ P++AA  G  F  L   +++ AS
Sbjct: 237 VFVLETNTLPGMTETSLLPKIAAGRGIDFPALCERILQGAS 277


>gi|229100710|ref|ZP_04231550.1| D-alanine--D-alanine ligase [Bacillus cereus Rock3-29]
 gi|229116119|ref|ZP_04245511.1| D-alanine--D-alanine ligase [Bacillus cereus Rock1-3]
 gi|228667349|gb|EEL22799.1| D-alanine--D-alanine ligase [Bacillus cereus Rock1-3]
 gi|228682691|gb|EEL36729.1| D-alanine--D-alanine ligase [Bacillus cereus Rock3-29]
          Length = 304

 Score =  295 bits (756), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 86/303 (28%), Positives = 161/303 (53%), Gaps = 9/303 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGG+SSE++VS+ +G    + L+   +++  I ++  + L+      D A   LHG
Sbjct: 3   IGVIMGGVSSEKQVSIMTGNEMIAHLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117
            +GEDG VQ  LE L IPY+ S +L+S + MDK  SK+++   GV     I + +     
Sbjct: 63  KYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNISKKILRYEGVETPDWIELTKMADLK 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
           +D    +  P V+KP  GGSS+G+ ++     +    +  + +    +++IE+Y+ G E+
Sbjct: 123 LDDLDKLGFPLVVKPNSGGSSVGVKIVNDKNELIS--MLETVFEWDSEVVIEKYIKGDEI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC +     L +  I    ++F+ Y  KY  +++   +  ++P +I + V + +   ++A
Sbjct: 181 TCSIFDGKHLPIVSIR-HAAEFFDYNAKYDDVSTIEEV-IELPTEIKERVNKASLACYKA 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           + C   +R D +        + +E+N  PGMT  S+ P+ A  AG ++ +LL  ++E + 
Sbjct: 239 LKCSVYARVDMMV--KDGIPYVMEVNTLPGMTQSSLLPKSADAAGINYSKLLDMIIETSL 296

Query: 298 CLR 300
            +R
Sbjct: 297 RVR 299


>gi|331001070|ref|ZP_08324701.1| D-ala D-ala ligase protein [Parasutterella excrementihominis YIT
           11859]
 gi|329569375|gb|EGG51153.1| D-ala D-ala ligase protein [Parasutterella excrementihominis YIT
           11859]
          Length = 313

 Score =  295 bits (756), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 111/303 (36%), Positives = 160/303 (52%), Gaps = 10/303 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AV+MGG S EREVSL SG     AL+  G  V + D        LA    D AF +LHG
Sbjct: 12  IAVVMGGSSGEREVSLMSGSGVLKALQSVGADVVKFDPAEQPLSDLA--GIDRAFLILHG 69

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--M 118
             GEDG++Q ++E L+IPYT SG+ ASA+ +DK  +K V  + G+PV   +++   T   
Sbjct: 70  KGGEDGVIQGVMEFLKIPYTGSGVQASAIGIDKEMTKAVWEAQGIPVPRGMVLRNETDCE 129

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           ++    +   VIKP K GSSLG+  +K      +    + S   G  +L E+YV G ELT
Sbjct: 130 EAHRRFNGNLVIKPSKEGSSLGLYKLKNATLDQVKEAFAKSQEAGMTVLAEEYVFGRELT 189

Query: 179 CGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
             V+    G  +  + EI  P  D Y +E KY S  + +V PA++P ++ ++++ +   A
Sbjct: 190 VAVLDMGEGLKAFPIIEIKAPDGD-YDFEHKYFSDETVYVCPAEVPENVTEKIKAVVEKA 248

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             A+G    SR D +          LEIN  PGMTP S+ P  A   G S+ EL+  +  
Sbjct: 249 ALAVGADAWSRIDVILRG-DGSFVLLEINTAPGMTPHSLVPLAARTCGISYEELVKQVAA 307

Query: 295 DAS 297
            AS
Sbjct: 308 RAS 310


>gi|284042877|ref|YP_003393217.1| D-alanine/D-alanine ligase [Conexibacter woesei DSM 14684]
 gi|283947098|gb|ADB49842.1| D-alanine/D-alanine ligase [Conexibacter woesei DSM 14684]
          Length = 346

 Score =  295 bits (756), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 94/339 (27%), Positives = 145/339 (42%), Gaps = 45/339 (13%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL--------------- 46
            V+ GG S E  +S+ S +  A  L+ A ++   I +  S    L               
Sbjct: 7   GVIFGGCSEEHPISVKSAQEVARHLDPARYEPFYIGITTSGAWKLCDGPDADWENGRCRP 66

Query: 47  --------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
                                 +  D+   VLHG  GEDG +Q +LEL  IPY    + +
Sbjct: 67  ATLSPDRSARGLLVLEYGRYETISLDVVLPVLHGKLGEDGAMQGLLELSGIPYAGCDVQS 126

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           SAL MDK  +  V  + G+       V          +  P  +KP + GSS G+  +  
Sbjct: 127 SALCMDKSLTYTVARAAGIATPRFWTVTANEHVDPDQLPYPVFVKPARSGSSFGVSKVSG 186

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSY 202
              +P  L    +  +  ++L+E+ V G E+ C ++G+     + +V +IA+    F  +
Sbjct: 187 RDELPGALDV--ARRYDSKVLVEEAVVGSEIGCAILGNGLDLLAGEVDQIALSHGFFRIH 244

Query: 203 ---ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
              E +  S NS+  +PA I  +    VQ  A  A++A+GCRG+SR D         V  
Sbjct: 245 QEDEPERGSDNSSVTVPAAISQEARALVQETAKAAYRALGCRGLSRVDMFLTA-DGDVVL 303

Query: 260 LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
            E+N  PGMT  S +P M A AG  F E++  +V  A  
Sbjct: 304 NEVNTLPGMTSYSRYPRMMAAAGLPFAEVIDRIVALALT 342


>gi|40021675|gb|AAR37060.1| VanD5 [Enterococcus faecium]
          Length = 343

 Score =  295 bits (756), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 82/336 (24%), Positives = 151/336 (44%), Gaps = 45/336 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           +AVL GG S E +VS+ S    A+ +    ++   I + +S    L              
Sbjct: 6   IAVLFGGCSEEHDVSVKSAMEVAANINKEKYQPFYIGITKSGAWKLCDKPCRDWENYAGY 65

Query: 47  ---------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
                                     D+   ++HG FGEDG +Q +LEL  IPY    I 
Sbjct: 66  PAVISPDRRTHGLLIQKDGGYESQPVDVVLPMIHGKFGEDGTIQGLLELSGIPYVGCDIQ 125

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145
           +S   MDK  +  VV + G+ V    ++ +        +S P  +KP + GSS G+  + 
Sbjct: 126 SSVTCMDKSLAYMVVKNAGIEVPGFRVLQKGDSLKAETLSYPVFVKPARSGSSFGVNKVC 185

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYS 201
           + + +   + ++    +  ++L+E+ V G E+ C ++G+     + +V +I +    F  
Sbjct: 186 RAEELQAAVTEAG--KYDCKILVEEAVSGSEVGCAILGNENALMAGEVDQIELRHGFFKI 243

Query: 202 Y---ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
           +   + +  S N+   +PA +P ++ + +Q+ A   ++ +GCRG++R D         + 
Sbjct: 244 HQEAQPEKGSENAVIRVPAVLPDEVRERIQKTAMKIYRILGCRGLARIDLFLRE-DGCIV 302

Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             E+N  PG T  S +P M   AG++  E+L  ++E
Sbjct: 303 LNEVNTMPGFTSYSRYPRMMTAAGFTLTEILDRLIE 338


>gi|297623804|ref|YP_003705238.1| D-alanine/D-alanine ligase [Truepera radiovictrix DSM 17093]
 gi|297164984|gb|ADI14695.1| D-alanine/D-alanine ligase [Truepera radiovictrix DSM 17093]
          Length = 351

 Score =  295 bits (756), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 94/340 (27%), Positives = 155/340 (45%), Gaps = 47/340 (13%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV----------------- 45
           +L GG S E EVSL+S ++  +A   A F V+ + + R   L+                 
Sbjct: 17  LLCGGRSDEHEVSLASARSVLAAAGSA-FAVTPLVIGRDGRLLPEAASRRVLCTPVPDTP 75

Query: 46  --------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSM 91
                         L     D+ F +LHG FGEDG VQ +L+LL +P+  S +L SA+ M
Sbjct: 76  PDALTATGALELSALEPGAFDVVFPLLHGPFGEDGSVQGLLKLLGLPFVGSDVLGSAVGM 135

Query: 92  DKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL--------ISPPYVIKPLKGGSSLGIIV 143
           DK   K V ++ G+P  P  L+ R                   P  +KP   GSS+GI  
Sbjct: 136 DKGMMKAVFAAHGLPQVPYRLMTRSAWRRDPEGVLASLMDFGLPVFVKPANLGSSVGISR 195

Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSD--FY 200
               + +   L  ++   +  ++L+E+ +    EL  GV+G+ +   + +   + +  FY
Sbjct: 196 ADDPEGLREALETAA--RYDRRVLVERGLARARELEVGVLGNDAPRASVVGEIRYESLFY 253

Query: 201 SYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260
            Y  KY+   +  ++PA IP ++    Q LA  A +A+   G++R DF       +++  
Sbjct: 254 DYSTKYTEGEAEPLIPAPIPPELAARCQALALEAFRAVDAAGLARVDFFL--AGGELYLN 311

Query: 261 EINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           EIN  PG T  S+FP++   +G  +  L+  ++  A   R
Sbjct: 312 EINTMPGFTRTSMFPKLWEASGVPYDALITQLIALALEAR 351


>gi|160894445|ref|ZP_02075221.1| hypothetical protein CLOL250_01997 [Clostridium sp. L2-50]
 gi|156863756|gb|EDO57187.1| hypothetical protein CLOL250_01997 [Clostridium sp. L2-50]
          Length = 352

 Score =  295 bits (756), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 93/346 (26%), Positives = 156/346 (45%), Gaps = 52/346 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLA------------- 47
           + V+ GG SSE EVS  S +  A A++   + ++ I + +    + A             
Sbjct: 6   LVVIFGGRSSEHEVSCISVQTVAKAVDTDKYDMTLIGITKDGKWLKADSIESIADGSWYD 65

Query: 48  ------------------------HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                       D+ F VLHG +GEDG +Q + E+ +IPY   G
Sbjct: 66  SQVRAVISPDSAKEIIIKDGDRIYAEPVDVIFPVLHGLYGEDGTIQGLFEMADIPYVGCG 125

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--------QHLISPPYVIKPLKG 135
           + ASA +MDK  +K +     V     + V     D         +  ++ P  +KP   
Sbjct: 126 VFASAAAMDKFHTKIIADHINVTQAKFVPVVEDDFDDLDVAMDRVESELNYPVFVKPSSA 185

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG----DASLDVTE 191
           GSS G+        +   L ++   NH  ++L+E+ + G EL CGV+G      +  V E
Sbjct: 186 GSSKGVTKAHDRAELEAGLHEAL--NHDSKILVEETIIGRELECGVLGYGNHTKASGVGE 243

Query: 192 I-AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
           I A   +DFY ++ KY++ +S  ++ A IP +   E++  A     AI   G++R DF  
Sbjct: 244 ILAAADADFYDFDAKYNNADSKTIIGADIPEEAEDEIRAEAIRIFNAIDGFGLARVDFFL 303

Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +  + +V + E+N  PG T +S++P +    GY  + L+  ++E A
Sbjct: 304 EKDTNRVIFNEVNTLPGFTSISMYPMLWDAEGYDIKTLVNTLIEMA 349


>gi|33240829|ref|NP_875771.1| D-alanine-D-alanine ligase and related ATP-grasp enzyme
           [Prochlorococcus marinus subsp. marinus str. CCMP1375]
 gi|39930844|sp|Q7VAS4|DDL_PROMA RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|33238358|gb|AAQ00424.1| D-alanine-D-alanine ligase and related ATP-grasp enzymes
           [Prochlorococcus marinus subsp. marinus str. CCMP1375]
          Length = 351

 Score =  295 bits (755), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 96/346 (27%), Positives = 155/346 (44%), Gaps = 52/346 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALED----AGFKVSQIDVDRSVGLVLAHL------- 49
           + ++ GG+S E EVS+ S +    AL+       F V  I +D+      + +       
Sbjct: 8   VGIVFGGVSGEHEVSIKSARTIIHALKHPININKFDVISIYIDKKGKWWPSEIAEKVLES 67

Query: 50  --------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                     K  + F VLHG  GEDG +Q   +L   PY  SG
Sbjct: 68  DPNFDKNIFFKQVEFIGLDHLPKETEKIQIWFPVLHGPNGEDGSIQGFFQLTGKPYVGSG 127

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-----------DSQHLISPPYVIKP 132
           +L SAL MDK+  K   S+ G+P      ++   +             +  +  P  IKP
Sbjct: 128 VLGSALGMDKIAMKAAFSAAGLPQVNYCEIHSIDLLDKKRLSYLIQKIETQLGYPCFIKP 187

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192
              GSS+GI      + +   L  ++      ++++E+ +   EL C V+G   +  + +
Sbjct: 188 ANLGSSVGISKAYDKKELLNGLDLAAQL--DSRIVVEKNIKARELECAVIGKKQIKTSCV 245

Query: 193 AVPK--SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
              +  SD+Y Y+ KYS  ++  ++PA IP  I KEVQ L+ LA +AI   GI+R DF +
Sbjct: 246 GEVRYSSDWYDYDSKYSKNSTKTLIPAPIPEKISKEVQSLSILACKAISAEGIARVDFFY 305

Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           D     ++  EIN  PG T  S++P +   +G    +L+  ++E A
Sbjct: 306 DEEKDSLWINEINTMPGFTEQSMYPMLWDASGIDISQLVARLIESA 351


>gi|14719504|pdb|1E4E|B Chain B, D-Alanyl-D-Lacate Ligase
          Length = 343

 Score =  295 bits (755), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 86/335 (25%), Positives = 145/335 (43%), Gaps = 45/335 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +A+L GG S E +VS+ S    A+ +    ++   I + +S    +              
Sbjct: 6   VAILFGGCSEEHDVSVKSAIEIAANINKEKYEPLYIGITKSGVWKMCEKPCAEWENENCY 65

Query: 52  --------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
                                     D+AF+ LHG  GEDG +Q + EL  IP+    I 
Sbjct: 66  SAVLSPDKKMHGLLVKKNHEYEINHVDVAFSALHGKSGEDGSIQGLFELSGIPFVGCDIQ 125

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145
           +SA+ MDK  +  V  + G+      ++N+         + P  +KP + GSS G+  + 
Sbjct: 126 SSAICMDKSLTYIVAKNAGIATPAFWVINKDDRPVAATFTYPVFVKPARSGSSFGVKKVN 185

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD-ASLDVTEIAVPKSDFYSY-- 202
               +  D    S+  +  ++LIEQ V G E+ C V+G+ A+L V E+   +  +  +  
Sbjct: 186 SADEL--DYAIESARQYDSKILIEQAVSGCEVGCAVLGNSAALVVGEVDQIRLQYGIFRI 243

Query: 203 ----ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
               E +  S N+   +PA +  +    +Q      ++ +GCRG++R D       R + 
Sbjct: 244 HQEVEPEKGSENAVITVPADLSAEERGRIQETVKKIYKTLGCRGLARVDMFLQDRGR-IV 302

Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
             E+N  PG T  S +P M A AG S  EL+  ++
Sbjct: 303 LNEVNTLPGFTSYSRYPRMMAAAGISLPELIDRLI 337


>gi|329117509|ref|ZP_08246226.1| D-ala D-ala ligase N-terminal domain protein [Streptococcus
           parauberis NCFD 2020]
 gi|326907914|gb|EGE54828.1| D-ala D-ala ligase N-terminal domain protein [Streptococcus
           parauberis NCFD 2020]
          Length = 348

 Score =  295 bits (755), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 94/334 (28%), Positives = 157/334 (47%), Gaps = 41/334 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH---LKPD----- 52
           + +L GG S+EREVS+ S ++   A+    F V    + +            KPD     
Sbjct: 6   LVLLYGGRSAEREVSVLSAESVMRAINYDKFFVKTYFISQVGDFYKTQELSQKPDDNEKL 65

Query: 53  ----------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
                                 + F VLHG  GEDG +Q  LE+L++PY  + IL+S+++
Sbjct: 66  MTNQSIEQSQLIKASDIYEENAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGTNILSSSVA 125

Query: 91  MDKMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
           MDK+ +K V++S G+P     +      ++    ++   +  P  +KP   GSS+GI   
Sbjct: 126 MDKITTKHVLASAGIPQVAFTVYIEGNDLDACMSETMEKLQFPIFVKPANMGSSVGISKA 185

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202
           +    + L      +  +  ++LIEQ V   E+  G++G+ S+  T     V    FY Y
Sbjct: 186 ET--EMELKEAIGLALKYDSRILIEQGVVAREIEVGLLGNNSVKSTFPGEVVKDVAFYDY 243

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
           + KY     T  +PA+I  +I KE++  A  A +A+G  G+SR DF        ++  E+
Sbjct: 244 QAKYIDNKITMAIPAEIDSEIVKEMRAYAEAAFKALGGCGLSRCDFFLTE-DGHMYLNEL 302

Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           N  PG T  S++P +    G  + +L+  +V+ A
Sbjct: 303 NTMPGFTQWSMYPLLWENMGLVYSDLIEELVKLA 336


>gi|325000509|ref|ZP_08121621.1| D-alanyl-alanine synthetase A [Pseudonocardia sp. P1]
          Length = 356

 Score =  295 bits (755), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 100/348 (28%), Positives = 158/348 (45%), Gaps = 53/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +AV+ GG SSE  +S  S  +  + L+   F+V  + + R    V     P         
Sbjct: 8   VAVVFGGRSSEHAISCVSAGSVLTHLDPERFEVVPVGISRDGAWVTGPSDPRELGISGRE 67

Query: 52  ---------------------------------DLAFNVLHGNFGEDGLVQAILELLEIP 78
                                            D+ F +LHG FGEDG +Q +LE+  +P
Sbjct: 68  LPEVDGTSDALVLPGEPGRGLIRLDAGEALSQVDVVFPILHGAFGEDGTIQGLLEMAGLP 127

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT---MDSQHLISPPYVIKPLKG 135
           Y  +G+LASA+ MDK  +K+++ + G+ V   I++   T      +  +  P  +KP + 
Sbjct: 128 YVGAGVLASAVGMDKEFAKKLLRAEGLNVADGIVLRPGTDIGFADRDRLGLPLFVKPARA 187

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG--DASLDVTEIA 193
           GSS+G+  +       LD   + +  H  ++L+E  V G E+ C V+   D S+  +  A
Sbjct: 188 GSSMGVTRVTDPA--GLDAAIAEAREHDPKVLVESAVPGREVECAVLEFPDGSVRASLPA 245

Query: 194 VPK--SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
             +   +FY +E KY    S   +PAK+  +I   V+  A  A +A+  +G++R DF   
Sbjct: 246 ELRYNGEFYDFESKYL-DVSELEIPAKLDDEITDSVRWKAVTAFRALDVQGLARVDFFVT 304

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
                +   E+N  PG TP S FP+M A  G  + ELL  MVE A   
Sbjct: 305 -DDGHITVNEVNTMPGFTPSSAFPKMWAVTGLDYGELLTTMVETALAR 351


>gi|317052426|ref|YP_004113542.1| D-alanine/D-alanine ligase [Desulfurispirillum indicum S5]
 gi|316947510|gb|ADU66986.1| D-alanine/D-alanine ligase [Desulfurispirillum indicum S5]
          Length = 303

 Score =  295 bits (755), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 98/300 (32%), Positives = 158/300 (52%), Gaps = 12/300 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + +LMGG S EREVS+ SG     ALE+ G+ V  +D           +  D+ +N LHG
Sbjct: 5   VGLLMGGTSREREVSVQSGTFVGKALEELGYAVRILDPQEP-RWQEKLIGVDMVYNTLHG 63

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF---- 116
             GEDG VQ  L++  IPYT +G+L SA+SMDK+ +K++  +CG+P    ++V       
Sbjct: 64  PVGEDGTVQGYLQMCGIPYTGTGVLGSAVSMDKIAAKRIALACGIPTPAYLVVTADMAHG 123

Query: 117 --TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
              M ++   S P V+K  + GSS+G+ ++         L +        Q+++E+Y+ G
Sbjct: 124 AVDMLAKSSFSFPLVVKVPREGSSIGVFIVHDAGEFQRALQECLQL--DSQVMVEEYIQG 181

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
            ELT G + D +L +  I V  + FY Y  KY+   + + +P K+       V   +   
Sbjct: 182 YELTSGFLDDLALPLVGI-VAGNAFYDYAAKYTKGMTVYDVPGKVDPSAASRVVDYSRRL 240

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            +A+G RG  R D++        ++LE+N  PGMT  S+ P+ A  AG SF +++  ++E
Sbjct: 241 CRALGLRGAFRVDYML--KDDVPYFLEVNTNPGMTQTSLIPKAAGAAGMSFADVVAKVLE 298


>gi|50082943|gb|AAT70093.1| D-alanyl-D-alanine ligase [Paenibacillus apiarius]
 gi|66731650|gb|AAY52016.1| VanA [Paenibacillus apiarius]
          Length = 343

 Score =  295 bits (755), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 87/335 (25%), Positives = 150/335 (44%), Gaps = 45/335 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           +A+L GG S E +VS+ S K  A+ +    ++   I + RS    +              
Sbjct: 6   IAILFGGCSEEHDVSVKSAKEIANNINTEKYEPIYIGITRSGVWKMCEKPCMDWDNENCR 65

Query: 49  -----------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
                                   + D AF+VLHG  GEDG +Q + EL  IPY    I 
Sbjct: 66  SAVLSPDKRMHGLLVMRDKGYQIQRIDAAFSVLHGKSGEDGAIQGLFELSGIPYVGCDIQ 125

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145
           +SA+ MDK  +  +  + G+      ++N+    +    + P  +KP + GSS G+  + 
Sbjct: 126 SSAVCMDKSLAYIIAKNDGIATPEFWVINKDDRPAAAAFTYPVFVKPARSGSSYGVKKVN 185

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS----LDVTEIAVPKSDFYS 201
               +  D    S+  +  ++LIEQ V G E+ C V+G++S     +V +I +    F  
Sbjct: 186 GADEL--DAAIESARQYDSKILIEQAVLGCEVGCAVLGNSSELIVGEVDQIRLQHGIFRI 243

Query: 202 Y---ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
           +   E +  S N+   +PA +  +    ++  A   ++A+GCRG++R D      + ++ 
Sbjct: 244 HQEAEPEKGSENAVITIPADLSAEERGRIRDTAKKIYKALGCRGLARVDMFL-QDNGRIV 302

Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
             E+N  PG T  S +P M   AG +  EL+  ++
Sbjct: 303 LNEVNTLPGFTSYSRYPRMMVAAGITLPELIDRLI 337


>gi|320546374|ref|ZP_08040690.1| D-alanine-D-alanine ligase [Streptococcus equinus ATCC 9812]
 gi|320448984|gb|EFW89711.1| D-alanine-D-alanine ligase [Streptococcus equinus ATCC 9812]
          Length = 348

 Score =  295 bits (755), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 96/334 (28%), Positives = 161/334 (48%), Gaps = 41/334 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           + +L GG S+EREVS+ S ++   A+    F V    + +S   +               
Sbjct: 6   LVLLYGGRSAEREVSVLSAESVMRAINYDKFFVKTYFITKSGDFIKTQEFSSKPADDEKL 65

Query: 47  ---------AHLKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
                      +KP        + F VLHG  GEDG +Q  LE+L++PY  + IL+S+++
Sbjct: 66  MTNDTVVESQKIKPSDIYEEGAVVFPVLHGPMGEDGSIQGFLEILKMPYVGTNILSSSVA 125

Query: 91  MDKMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
           MDK+ +K V+ S GVP+   +       + +   +    ++ P  +KP   GSS+GI   
Sbjct: 126 MDKISTKHVLESAGVPLVAYVTYVEGADLEKTVAEVNEKLTYPVFVKPANMGSSVGISKA 185

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202
           + + ++   +    +  +  ++LIE  V+  E+  G++G+A +  T     V    FY Y
Sbjct: 186 EGEAALRTAI--DFALKYDSRILIETGVNAREIEVGILGNADVKTTLPGEVVKDVAFYDY 243

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
           + KY     T  +PA I  DI +E++  A  A +AIG  G+SR DF        V+  E+
Sbjct: 244 DAKYIDNKITMDIPAHIDSDIMEEMRGYATTAFRAIGGCGLSRCDFFLTE-DGHVYLNEL 302

Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           N  PG T  S++P +    G ++ +L+  +VE A
Sbjct: 303 NTMPGFTQWSMYPLLWENMGLAYTDLVEKLVELA 336


>gi|255994688|ref|ZP_05427823.1| D-alanine--D-alanine ligase [Eubacterium saphenum ATCC 49989]
 gi|255993401|gb|EEU03490.1| D-alanine--D-alanine ligase [Eubacterium saphenum ATCC 49989]
          Length = 359

 Score =  295 bits (755), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 87/328 (26%), Positives = 156/328 (47%), Gaps = 37/328 (11%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +AV+ GG S E E+S  S    A  L +   +V  I +D+S                   
Sbjct: 11  VAVIFGGRSPEHEISCISAGFIAKGLREIFGRVVNIYIDKSGNWHRVDDGIIDFTKLDVK 70

Query: 52  ---------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRS 96
                          D+ ++VLHG +GEDG +Q + E+ ++PY    + ASA++MDK+ +
Sbjct: 71  NEAESCTIEQCLTDVDIVWSVLHGPYGEDGKIQGLFEMYDVPYVGCNVTASAIAMDKVIA 130

Query: 97  KQVVSSCGVPVCPSILV--------NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQ 148
           K V    G+      L+            ++    +  P  +KP   GSS+GI     ++
Sbjct: 131 KNVFEHAGLKTVKYELLLEKEYRDDEERELERIEKLGFPMFVKPANMGSSVGISKATDEK 190

Query: 149 SIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV--PKSDFYSYELKY 206
            +   +  +  +++  +L+IE+ + G E+   V G+   + +      P+++FY  + KY
Sbjct: 191 KLKKAIEDAFQYDY--RLIIEENIIGKEVEVAVFGNGPYEASVAGEIRPRAEFYDVDAKY 248

Query: 207 -SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            S  ++  ++PA I  +  K +Q  A +A +AI C+GI R D      S ++F  E+N  
Sbjct: 249 HSGGDTAIIIPADISEEQMKMLQEEAKIAARAIDCKGICRVDSFIKADSNEIFINEVNTM 308

Query: 266 PGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           PG T +S++P++   +G S +ELL  ++
Sbjct: 309 PGFTEISMYPKLWEVSGISNKELLERII 336


>gi|71892247|ref|YP_277981.1| D-alanyl-alanine synthetase A [Candidatus Blochmannia
           pennsylvanicus str. BPEN]
 gi|123640879|sp|Q492J5|DDL_BLOPB RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|71796353|gb|AAZ41104.1| D-alanine:D-alanine ligase A [Candidatus Blochmannia pennsylvanicus
           str. BPEN]
          Length = 368

 Score =  295 bits (755), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 92/340 (27%), Positives = 166/340 (48%), Gaps = 47/340 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           + ++ GG S E E+SL S    A  ++   F+   + +D+     L              
Sbjct: 6   IGIICGGRSLEHEISLKSAMCIAQFIDKFRFEAMILWIDKKGCWHLKDIDFNDLSYHKDE 65

Query: 49  -----------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
                                  LK D+ F V+HG  GEDG +Q +L ++ +P+  S +L
Sbjct: 66  KISILLQNCPYPFKFHTKNINILLKFDVIFPVVHGTLGEDGALQGLLCMMNLPFVGSNVL 125

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILV---NRFTMDSQ---HLISPPYVIKPLKGGSSL 139
           +S++ MDK  SK ++   G+ V P   V   ++  +D      +   P  +KP   GSS+
Sbjct: 126 SSSVGMDKDVSKCLLRDAGLSVVPFRTVLAQDQHNIDFDYFVSIFGLPLFVKPSNQGSSI 185

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPK 196
           G+  + K +   L L+++ S+   +++LIE  + G EL C V+G+ +  ++   E+ +  
Sbjct: 186 GVSKVTKCKDFNLALIKAFSF--SNKILIEPAIIGRELECAVLGNDNPKISVCGEVILSD 243

Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256
           ++FY+Y  KY    +  ++PA I   I  +++ +A  A Q + C G++R D   + L  K
Sbjct: 244 NNFYTYHDKYVKRKAQIMIPALINDAISDDIRHIALRAFQVLNCSGMARVDVFLN-LDNK 302

Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +F  E+N  PG T  S++P++   +G + +EL+  +VE A
Sbjct: 303 IFINEVNTLPGFTFDSMYPKLWEVSGLNLQELITKLVELA 342


>gi|313609857|gb|EFR85282.1| D-alanine--D-alanine ligase [Listeria monocytogenes FSL F2-208]
          Length = 370

 Score =  294 bits (754), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 87/351 (24%), Positives = 159/351 (45%), Gaps = 60/351 (17%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---LAHLKPD------- 52
           +L GG S+E EVSL +  +  +AL+   F+ + I +      +   L   K D       
Sbjct: 7   LLYGGKSAEHEVSLQTAFSVINALDLEKFEAAPIYITNEGEWIQGPLLSGKLDFVEQLRF 66

Query: 53  ---------------------------------LAFNVLHGNFGEDGLVQAILELLEIPY 79
                                            + F +LHG  GEDG VQ + E+L IPY
Sbjct: 67  SATDTIKLATTESEKSEGEAISPAVLEADGQETVVFPLLHGPNGEDGTVQGLFEVLNIPY 126

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVI 130
             +G+LAS+ +MDK+  K++ +  G+P  P++ V              + + +++ P  +
Sbjct: 127 VGNGVLASSAAMDKIVMKKIFADAGIPQVPAVAVRLIDWKNYQAEMITEMEEVLTYPVFV 186

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--D 188
           KP   GSS+GI      + +      + ++ +  ++++EQ V   E+  GV+G+ +    
Sbjct: 187 KPANLGSSVGISKATNKKEL--ADAMTEAFLYDRRVVVEQGVVAREIEMGVLGNDTPVCS 244

Query: 189 VTEIAVPKS---DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
           V    +P+     FY Y+ KY   N+  ++P ++  +I ++++  A  A   +   G+ R
Sbjct: 245 VPGEILPEGAVATFYDYKAKYQDNNTALIIPTEVDPEILEQMKEYAVQAFLGLDASGLVR 304

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +DF       ++F  E+N  PG TP S++P +    G  +  L+  +V+ A
Sbjct: 305 ADFFLTE-DNQLFLNEVNTMPGFTPYSMYPLLWQETGLPYGALIERLVDLA 354


>gi|21222011|ref|NP_627790.1| D-alanine--D-lactate ligase [Streptomyces coelicolor A3(2)]
 gi|32171932|sp|Q9XAK7|VANL_STRCO RecName: Full=Putative D-alanine--D-lactate ligase; AltName:
           Full=Vancomycin resistance-like protein
 gi|5123870|emb|CAB45462.1| putative D-alanine:D-lactate ligase [Streptomyces coelicolor A3(2)]
          Length = 346

 Score =  294 bits (754), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 91/342 (26%), Positives = 146/342 (42%), Gaps = 45/342 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           + ++ GG S E  VS+ S +  A  L+   ++   + + +     L              
Sbjct: 6   VGIVFGGSSEEHAVSVKSAQEVARNLDTEKYQPFFVGITKDGAWRLCDGPGQDWENGDCR 65

Query: 47  ---------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
                                  ++ D+   VLHG  GEDG  Q +LEL  IPY    + 
Sbjct: 66  PVVLSPDRSVHGLLVLEQGQYRSVRLDVVLPVLHGTLGEDGATQGLLELSGIPYVGCDVQ 125

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145
           +SAL MDK  +  V  S G+       V          ++ P  +KP + GSS G+  + 
Sbjct: 126 SSALCMDKSLAYVVARSAGIATPDFWTVTGDETIDPGRLTYPVFVKPARSGSSFGVSKVC 185

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYS 201
           + + +   +   S+  +  ++LIE  V G E+ C ++G+       +V  IA+    F  
Sbjct: 186 RPEDLATAV--ESARRYDTKVLIEAAVVGSEVGCAILGNDPDLIVGEVDRIALSHGFFRI 243

Query: 202 YELKY---SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
           ++ +     S NST V+PA IP +    VQ  A   ++A+GCRG+SR D        +V 
Sbjct: 244 HQEEQPENGSENSTPVVPADIPTEKRSLVQETAKAVYRALGCRGLSRVDMFL-KEDGEVV 302

Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
             E+N  PGMT  S +P M A AG    E++   +  A   +
Sbjct: 303 LNEVNTLPGMTSYSRYPRMMAAAGLPLSEVIDRTLSLALTGK 344


>gi|47094861|ref|ZP_00232475.1| D-alanine--D-alanine ligase [Listeria monocytogenes str. 1/2a
           F6854]
 gi|254898973|ref|ZP_05258897.1| D-alanyl-alanine synthetase A [Listeria monocytogenes J0161]
 gi|254911539|ref|ZP_05261551.1| D-alanine-D-alanine ligase [Listeria monocytogenes J2818]
 gi|254935865|ref|ZP_05267562.1| D-alanine-D-alanine ligase [Listeria monocytogenes F6900]
 gi|47016743|gb|EAL07662.1| D-alanine--D-alanine ligase [Listeria monocytogenes str. 1/2a
           F6854]
 gi|258608453|gb|EEW21061.1| D-alanine-D-alanine ligase [Listeria monocytogenes F6900]
 gi|293589485|gb|EFF97819.1| D-alanine-D-alanine ligase [Listeria monocytogenes J2818]
          Length = 370

 Score =  294 bits (754), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 87/351 (24%), Positives = 159/351 (45%), Gaps = 60/351 (17%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---LAHLKPD------- 52
           +L GG S+E EVSL +  +  +AL+   F+ + I +      +   L   K D       
Sbjct: 7   LLYGGKSAEHEVSLQTAFSVINALDLEKFEAAPIYITNEGEWIQGPLLSGKLDFVEQLRF 66

Query: 53  ---------------------------------LAFNVLHGNFGEDGLVQAILELLEIPY 79
                                            + F +LHG  GEDG VQ + E+L IPY
Sbjct: 67  SATDTIKLATTESEKSEGEAISPAVLEADGQETVVFPLLHGPNGEDGTVQGLFEVLNIPY 126

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVI 130
             +G+LAS+ +MDK+  K++ +  G+P  P++ V              + + +++ P  +
Sbjct: 127 VGNGVLASSAAMDKIVMKKIFADAGIPQVPAVAVRLIDWKNYQAEMITEMEEVLTYPVFV 186

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--D 188
           KP   GSS+GI      + +      + ++ +  ++++EQ V   E+  GV+G+ +    
Sbjct: 187 KPANLGSSVGISKATNKKEL--ADAMTEAFLYDRRVVVEQGVVAREIEMGVLGNDTPVCS 244

Query: 189 VTEIAVPKS---DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
           V    +P+     FY Y+ KY   N+  ++P ++  +I ++++  A  A   +   G+ R
Sbjct: 245 VPGEILPEGAVATFYDYKAKYQDNNTALIIPTEVDPEILEQMKEYAVQAFLGLDASGLVR 304

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +DF       ++F  E+N  PG TP S++P +    G  +  L+  +V+ A
Sbjct: 305 ADFFLTE-DNQLFLNEVNTMPGFTPYSMYPLLWQETGLPYGALIERLVDLA 354


>gi|325912908|ref|ZP_08175285.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus iners
           UPII 60-B]
 gi|329919818|ref|ZP_08276769.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus iners
           SPIN 1401G]
 gi|325477796|gb|EGC80931.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus iners
           UPII 60-B]
 gi|328937165|gb|EGG33593.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus iners
           SPIN 1401G]
          Length = 361

 Score =  294 bits (754), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 92/345 (26%), Positives = 163/345 (47%), Gaps = 48/345 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------DRSVGLVLA----- 47
           + ++ GG SSE EVS+ SG+    A++   + V  + +        D     VL      
Sbjct: 7   VGLIFGGNSSEYEVSIISGRNIYKAIDKEKYDVYPMWITNTGFLASDADSRKVLEDPTYQ 66

Query: 48  ------------------HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
                               + D+ F ++HGN GEDG +Q +L +L+ P+    +LA+A+
Sbjct: 67  IENPRTVTNISNVIELSNRPEIDVFFPIVHGNLGEDGCLQGLLRILDKPFVGDDVLAAAI 126

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ-----------HLISPPYVIKPLKGGSS 138
           +MDK  +K +    GVPV   I + RF  D               +     +KP   GSS
Sbjct: 127 TMDKELNKIMAQRAGVPVAKWISIKRFEYDDAKNEKLSYDYVSQQLGTDLFVKPSNQGSS 186

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVP 195
           +GI  +         L  + ++ + D++L+E+ + G E+   V+G+    V+   +I   
Sbjct: 187 VGISHVTSASDYKAAL--AEAFKYDDKVLVEETIKGTEVETAVLGNDDAIVSGVGQITNA 244

Query: 196 KSDFYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
           +  +YSYE KY+  +++ +  PA +P +I + V+R A   + A  C G++R D +     
Sbjct: 245 QGSWYSYENKYNDNSTSKLQIPAALPSEIIETVRRQALKVYHATECSGLARVDSMLTTDG 304

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
            KV + E+N  PG T +S++P++   AG  + EL+  +++ A   
Sbjct: 305 HKVIFNELNALPGFTNISMYPKLFEEAGIPYAELITKLLDYAVAR 349


>gi|309804050|ref|ZP_07698131.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus iners
           LactinV 11V1-d]
 gi|308163818|gb|EFO66084.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus iners
           LactinV 11V1-d]
          Length = 361

 Score =  294 bits (754), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 92/345 (26%), Positives = 163/345 (47%), Gaps = 48/345 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------DRSVGLVLA----- 47
           + ++ GG SSE EVS+ SG+    A++   + V  + +        D     VL      
Sbjct: 7   VGLIFGGNSSEYEVSIISGRNIYKAIDKEKYDVYPMWITNTGFLASDADSRKVLEDPTYQ 66

Query: 48  ------------------HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
                               + D+ F ++HGN GEDG +Q +L +L+ P+    +LA+A+
Sbjct: 67  IENPHTVTNISNVIELSNRPEIDVFFPIVHGNLGEDGCLQGLLRILDKPFVGDDVLAAAI 126

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ-----------HLISPPYVIKPLKGGSS 138
           +MDK  +K +    GVPV   I + RF  D               +     +KP   GSS
Sbjct: 127 TMDKELNKIMAQRAGVPVAKWISIKRFEYDDAKNEKLSYDYVSQQLGTDLFVKPSNQGSS 186

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVP 195
           +GI  +         L  + ++ + D++L+E+ + G E+   V+G+    V+   +I   
Sbjct: 187 VGISHVTSASDYKAAL--AEAFKYDDKVLVEETIKGTEVETAVLGNDDAIVSGVGQITNA 244

Query: 196 KSDFYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
           +  +YSYE KY+  +++ +  PA +P +I + V+R A   + A  C G++R D +     
Sbjct: 245 QGSWYSYENKYNDNSTSKLQIPAALPSEIIETVRRQALKVYHATECSGLARVDSMLTTDG 304

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
            KV + E+N  PG T +S++P++   AG  + EL+  +++ A   
Sbjct: 305 HKVIFNELNALPGFTNISMYPKLFEEAGIPYAELITKLLDYAVAR 349


>gi|305681869|ref|ZP_07404673.1| D-ala D-ala ligase N-terminal domain protein [Corynebacterium
           matruchotii ATCC 14266]
 gi|305658342|gb|EFM47845.1| D-ala D-ala ligase N-terminal domain protein [Corynebacterium
           matruchotii ATCC 14266]
          Length = 356

 Score =  294 bits (754), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 91/351 (25%), Positives = 159/351 (45%), Gaps = 57/351 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +A++ GG SSE  VS  S  A  S L+   +++  I + +     +    P         
Sbjct: 10  IAIIYGGRSSEHSVSCISAGAIMSHLDPEKYELYPIGITQQGTWTVGESDPEKLRSTNGA 69

Query: 52  ---------------------------------DLAFNVLHGNFGEDGLVQAILELLEIP 78
                                            D+ F VLHG +GEDG +Q + EL  +P
Sbjct: 70  MPTVTLTKEVSLAADPARRGQFRFADGSEHVTVDVIFPVLHGLYGEDGTIQGLFELSGVP 129

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ---HLISPPYVIKPLKG 135
           Y  +G+L+SA  MDK  +K+++++ G+PV   +++      +Q    L+  P  +KP +G
Sbjct: 130 YVGTGVLSSACGMDKEYTKKLLAAEGLPVGKEVILRGEETLTQADCQLLGLPVYVKPARG 189

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA-- 193
           GSS+GI  + + + +  D     +  +  ++++E  + G E+ CGV+      V      
Sbjct: 190 GSSIGISRVTRWEDM--DAALREARQYDTKVIVESEIIGDEVECGVLEYPDGTVVASVPA 247

Query: 194 ------VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
                 V    FY ++ KY   + + ++PA +     + +Q LA  A QA+ C G++R D
Sbjct: 248 QLVNTSVGHEGFYGFDAKYVDGDVSAMIPAPLDDAATRLIQSLAREAFQALQCSGLARVD 307

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           F            E+N  PG TP+S++P++ A +G  + ELL  ++  A  
Sbjct: 308 FFVTQAG--PVLNEVNTMPGFTPISMYPQVFAASGVPYAELLDTLIARALA 356


>gi|217965050|ref|YP_002350728.1| D-alanine--D-alanine ligase (D-alanylalanine
           synthetase)(D-Ala-D-Ala ligase) [Listeria monocytogenes
           HCC23]
 gi|217334320|gb|ACK40114.1| D-alanine--D-alanine ligase (D-alanylalanine
           synthetase)(D-Ala-D-Ala ligase) [Listeria monocytogenes
           HCC23]
 gi|307570389|emb|CAR83568.1| D-alanine--D-alanine ligase [Listeria monocytogenes L99]
          Length = 370

 Score =  294 bits (754), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 87/351 (24%), Positives = 159/351 (45%), Gaps = 60/351 (17%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---LAHLKPD------- 52
           +L GG S+E EVSL +  +  +AL+   F+ + I +      +   L   K D       
Sbjct: 7   LLYGGKSAEHEVSLQTAFSVINALDLEKFEAAPIYITNEGEWIQGPLLSGKLDFVEQLRF 66

Query: 53  ---------------------------------LAFNVLHGNFGEDGLVQAILELLEIPY 79
                                            + F +LHG  GEDG VQ + E+L IPY
Sbjct: 67  SATDSIKLATTESEKSEGEAISPAVLEADGQETVVFPLLHGPNGEDGTVQGLFEVLNIPY 126

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVI 130
             +G+LAS+ +MDK+  K++ +  G+P  P++ V              + + +++ P  +
Sbjct: 127 VGNGVLASSAAMDKIVMKKIFADAGIPQVPAVAVRLIDWKNYQAEMITEMEEVLTYPVFV 186

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--D 188
           KP   GSS+GI      + +      + ++ +  ++++EQ V   E+  GV+G+ +    
Sbjct: 187 KPANLGSSVGISKATNKKEL--ADAMTEAFLYDRRVVVEQGVVAREIEMGVLGNDTPVCS 244

Query: 189 VTEIAVPKS---DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
           V    +P+     FY Y+ KY   N+  ++P ++  +I ++++  A  A   +   G+ R
Sbjct: 245 VPGEILPEGAVATFYDYKAKYQDNNTALIIPTEVDPEILEQMKEYAVQAFLGLDASGLVR 304

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +DF       ++F  E+N  PG TP S++P +    G  +  L+  +V+ A
Sbjct: 305 ADFFLTE-DNQLFLNEVNTMPGFTPYSMYPLLWQETGLPYGALIERLVDLA 354


>gi|300741707|ref|ZP_07071728.1| D-alanine--D-alanine ligase [Rothia dentocariosa M567]
 gi|300380892|gb|EFJ77454.1| D-alanine--D-alanine ligase [Rothia dentocariosa M567]
          Length = 374

 Score =  294 bits (754), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 98/360 (27%), Positives = 158/360 (43%), Gaps = 67/360 (18%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50
           +A+L GG SSE  +SL +     SA++ + + V  I + +     L +L+          
Sbjct: 10  VALLCGGRSSEHPISLITAVGVLSAIDSSVYDVVTIGITKDGRWYLTNLEELSALLDAAP 69

Query: 51  -------------------------------------PDLAFNVLHGNFGEDGLVQAILE 73
                                                 D+ F ++HG FGEDG +Q +LE
Sbjct: 70  AHAEFTGGSHQVFLPLGAGDSRVHLVDADGNLEYGPALDVVFPLIHGPFGEDGTIQGLLE 129

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH--------LIS 125
           L E+PY   G+ ASA+ MDK   K    S G+ V P  +V       +          + 
Sbjct: 130 LAELPYVGCGVTASAVGMDKHFMKVAFESAGLEVGPYEVVTDRQWTHEREESLKRITALG 189

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            P  +KP + GSS GI  + K + +   +    +  H  ++++E  + G E+ CGV+   
Sbjct: 190 YPMFVKPTRAGSSFGITKVDKFEELVPAI--EEARRHDAKIIVEAGIVGREIECGVLDGH 247

Query: 186 SLD------VTEIAVPKSD--FYSYELKYSSLNS-THVLPAKIPLDIYKEVQRLAFLAHQ 236
             D        EI V   D  FY ++ KY S +S     PA +P D+ + ++ LA  A  
Sbjct: 248 HGDMPRASYPGEIEVVDEDHGFYDFDAKYISKSSAVTRCPADLPKDMQERLRALAVKAFL 307

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           A+   G+SR+DF + P   ++   E+N  PG TP+S++  M    G S+ EL+  ++  A
Sbjct: 308 ALDGEGLSRADFFYTP-DGRLVINEVNTMPGFTPISMYKTMWENTGISYTELIDELLTLA 366


>gi|322412133|gb|EFY03041.1| D-alanyl-alanine synthetase A [Streptococcus dysgalactiae subsp.
           dysgalactiae ATCC 27957]
          Length = 348

 Score =  294 bits (754), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 89/334 (26%), Positives = 160/334 (47%), Gaps = 41/334 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           + +L GG S+EREVS+ S ++   A+    F V    + ++   +               
Sbjct: 6   LVLLYGGRSAEREVSVLSAESVMRAVNYDKFLVKTYFISQTGQFIKTQEFSEKPAATERL 65

Query: 46  --------LAHLKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
                      +KP        + F +LHG  GEDG +Q  LE+L +PY  + IL+S+++
Sbjct: 66  MTNSTIQYEQQIKPSDIYEEDAVVFPLLHGPMGEDGSIQGFLEVLRMPYVGTNILSSSVA 125

Query: 91  MDKMRSKQVVSSCGVPVCPS-ILVNRFTMDS-----QHLISPPYVIKPLKGGSSLGIIVI 144
           MDK+ +K+V+ S G+P     + ++   +++        ++ P  +KP   GSS+GI   
Sbjct: 126 MDKITTKRVLESAGIPQVAYTVYIDGQDLEACLTETLATLAFPIFVKPANMGSSVGISKA 185

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202
           +  + +   +  +    +  ++LIEQ V   E+  G++G+  +  T     V   DFY Y
Sbjct: 186 QTKEELKEAIQLAL--TYDSRVLIEQGVVAREIEVGLLGNTEVKSTLPGEVVKDVDFYDY 243

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
           + KY     T  +PA+I  D   +++  A  A +A+G  G+SR DF       +++  E+
Sbjct: 244 KAKYIDNKITMAIPAEINQDTMTKMRTYAESAFKALGGCGLSRCDFFLS-QDGQIYLNEL 302

Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           N  PG T  S++P +    G ++ +L+  +V  A
Sbjct: 303 NTMPGFTQWSMYPLLWENMGLAYSDLIEELVTLA 336


>gi|298241035|ref|ZP_06964842.1| D-alanine/D-alanine ligase [Ktedonobacter racemifer DSM 44963]
 gi|297554089|gb|EFH87953.1| D-alanine/D-alanine ligase [Ktedonobacter racemifer DSM 44963]
          Length = 348

 Score =  294 bits (754), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 95/338 (28%), Positives = 152/338 (44%), Gaps = 45/338 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           +A+L GG S E  +S+ S +  A  L+   ++   I + +S    L              
Sbjct: 6   VAILFGGCSEEHPISVKSAQEVAKHLDIEKYEPFYIGITKSGAWKLCDGPGANWENNNCR 65

Query: 47  ---------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
                                  ++ D+   VLHG  GEDG +Q +LEL  IPY    I 
Sbjct: 66  PAMLSPDRSVHGLLVLEQGQYKTIRLDMVLPVLHGKLGEDGAMQGLLELSGIPYVGCDIQ 125

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145
           +SAL MDK  +  VV + G+      +V          +  P V+KP + GSS G+  + 
Sbjct: 126 SSALCMDKSLAYIVVRNAGIATPNFWIVTADEDIDADRLPYPVVVKPARSGSSFGVSKVS 185

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYS 201
           + + +   +   ++  +  ++LIE+ V G E+ C ++G+       +V +I +    F  
Sbjct: 186 RKEELLSAV--ETARQYDSKVLIEEAVVGSEVGCAILGNDLDVIVGEVDQIRLSHGFFRI 243

Query: 202 YE---LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
           ++    +  S NST ++PA I  +    VQ+ A   ++ +GCRG+SR D        KV 
Sbjct: 244 HQENNPESGSENSTVIVPADISAEARLLVQQTAKAIYRTLGCRGLSRVDMFL-KEDGKVV 302

Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             E+N  PGMT  S +P M A AG  F E++  MV  A
Sbjct: 303 LNEVNTLPGMTSYSRYPRMMAGAGLPFAEVIDRMVSFA 340


>gi|15643029|ref|NP_228072.1| D-alanyl-alanine synthetase A [Thermotoga maritima MSB8]
 gi|170288487|ref|YP_001738725.1| D-alanine--D-alanine ligase [Thermotoga sp. RQ2]
 gi|6226593|sp|P46805|DDL_THEMA RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|190359217|sp|B1L9P4|DDL_THESQ RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|4980755|gb|AAD35347.1|AE001708_15 D-alanine--D-alanine ligase [Thermotoga maritima MSB8]
 gi|170175990|gb|ACB09042.1| D-alanine--D-alanine ligase [Thermotoga sp. RQ2]
          Length = 303

 Score =  294 bits (754), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 102/301 (33%), Positives = 157/301 (52%), Gaps = 13/301 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK-PDLAFNVLH 59
           +A+LMGG+S ERE+SL SG+    ALE  G++ +  DV       +  LK  D+ FNVLH
Sbjct: 3   VALLMGGVSREREISLRSGERVKKALEKLGYEHTVFDVREDFLKKVDQLKSFDVVFNVLH 62

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G FGEDG +QAIL+ L I YT S   +S +  DK+ + + +    V +   + +  F   
Sbjct: 63  GTFGEDGTLQAILDFLGIRYTGSDAFSSMICFDKLVTYRFLKGT-VEIPDFVEIKEFMKT 121

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
           S   +  P V+KP + GSS+G+ V + D+     L +         +++++Y+ G E+T 
Sbjct: 122 SP--LGYPCVVKPRREGSSIGVFVCESDEEFQHALKEDLP--RYGSVIVQKYIPGREMTV 177

Query: 180 GVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
            ++    G   L V E+  PK  FY Y  KY+   +  +LPA +     + V+ +A  A 
Sbjct: 178 SILETEKGFEILPVLELR-PKRRFYDYVAKYTKGETEFILPAPLNPSEERLVKEMALKAF 236

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
              GCRG  R D +F     + ++LEIN  PG+T  S  P  A   G  F EL+  +++ 
Sbjct: 237 VEAGCRGFGRVDGIF--SDGRFYFLEINTVPGLTETSDLPASAKAGGIEFEELVEIILKS 294

Query: 296 A 296
           A
Sbjct: 295 A 295


>gi|322373496|ref|ZP_08048032.1| D-alanine--D-alanine ligase [Streptococcus sp. C150]
 gi|321278538|gb|EFX55607.1| D-alanine--D-alanine ligase [Streptococcus sp. C150]
          Length = 348

 Score =  294 bits (754), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 88/329 (26%), Positives = 159/329 (48%), Gaps = 41/329 (12%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL---------------- 46
           +L GG S+EREVS+ S ++   A++ + F+V    + +S   +                 
Sbjct: 8   LLYGGRSAEREVSVLSAESVMRAVDYSAFEVKTYFITQSGDFIKTQEFTETPGDDEKLMT 67

Query: 47  -------AHLKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
                    +KP        + F VLHG  GEDG +Q  LE L++PY  + +L+S+L+MD
Sbjct: 68  NDTVVASQAIKPSDIYEEGAVVFPVLHGPMGEDGSIQGFLETLKLPYVGTNVLSSSLAMD 127

Query: 93  KMRSKQVVSSCGVPVCPS-ILVNRFTMDSQ-----HLISPPYVIKPLKGGSSLGIIVIKK 146
           K+ +K ++   GVP     + +    +++        ++ P  +KP   GSS+GI   + 
Sbjct: 128 KITTKHILEVVGVPQVAYTVFIEGEDLEAAVARTVQKLTFPVFVKPANMGSSVGISKAEN 187

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYEL 204
           +  +   +  +    +  ++LIEQ V   E+  G++G+ ++  TE    V    FY Y+ 
Sbjct: 188 EAELRAAIDLAL--KYDSRILIEQGVVAREIEVGILGNTTVKTTEPGEVVKDVAFYDYQA 245

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           KY     T  +PA +P ++  +++  A  A +A+G  G++R DF        ++  E+N 
Sbjct: 246 KYIDNKITMDIPAHVPAEVMTQMRAYAAKAFRALGGCGLARCDFFL-AEDGTIYLNELNT 304

Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            PG T  S++P +    G S+ +L+  +V
Sbjct: 305 MPGFTQWSMYPLLWENMGLSYTDLIKELV 333


>gi|55821559|ref|YP_140001.1| D-alanyl-alanine synthetase A [Streptococcus thermophilus LMG
           18311]
 gi|81560260|sp|Q5M355|DDL_STRT2 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|55737544|gb|AAV61186.1| D-alanine-D-alanine ligase [Streptococcus thermophilus LMG 18311]
          Length = 348

 Score =  294 bits (754), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 84/329 (25%), Positives = 158/329 (48%), Gaps = 41/329 (12%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD---------- 52
           +L GG S+EREVS+ S ++   A++   F+V    + +S   +      +          
Sbjct: 8   LLYGGRSAEREVSVLSAESVMRAVDYNAFEVKTYFITQSGDFIKTQEFIETPGDDEKLMT 67

Query: 53  --------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
                               + F VLHG  GEDG +Q  LE L++PY  + +L+S+++MD
Sbjct: 68  NDTVEASQAIKPSDIYEEDAVVFPVLHGPMGEDGSIQGFLETLKLPYVGTNVLSSSVAMD 127

Query: 93  KMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           K+ +K+++   GVP     +      +     ++   ++ P  +KP   GSS+GI   + 
Sbjct: 128 KIMTKRILEVAGVPQVAYTVYIEGEDLEAAVAETLEKLTFPVFVKPANMGSSVGISKAEN 187

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYEL 204
           +  +   +  +    +  ++LIEQ V   E+  G++G+ ++  T+    V    FY Y+ 
Sbjct: 188 ESELRSAIDLAL--KYDSRILIEQGVVAREIEVGILGNTTVKTTDPGEVVKDVAFYDYQA 245

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           KY     T  +PA++P+++  +++  A  A +A+G  G++R DF        ++  E+N 
Sbjct: 246 KYIDNKITMDIPARVPVEVMTQMRAYAAKAFRALGGCGLARCDFFLTE-DGAIYLNELNT 304

Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            PG T  S++P +    G S+ +L+  +V
Sbjct: 305 MPGFTQWSMYPLLWENMGLSYSDLIKELV 333


>gi|116872268|ref|YP_849049.1| D-alanyl-alanine synthetase A [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|123466129|sp|A0AGY4|DDL_LISW6 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|116741146|emb|CAK20266.1| D-alanine--D-alanine ligase [Listeria welshimeri serovar 6b str.
           SLCC5334]
          Length = 370

 Score =  294 bits (754), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 88/351 (25%), Positives = 159/351 (45%), Gaps = 60/351 (17%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---LAHLKPD------- 52
           +L GG S+E EVSL +  +  +AL+   F+   I +      V   L   K D       
Sbjct: 7   LLYGGKSAEHEVSLQTAFSVINALDLEKFEAEPIYITNEGEWVQGPLLTGKLDFVEQLRF 66

Query: 53  ---------------------------------LAFNVLHGNFGEDGLVQAILELLEIPY 79
                                            + F +LHG  GEDG VQ + E+L IPY
Sbjct: 67  SATNTVKLAATESEKSEGEAISPAVLEADDQETVVFPLLHGPNGEDGTVQGLFEVLNIPY 126

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVI 130
             +G+LAS+ +MDK+  K++ +  G+P  P++ V              + + +++ P  +
Sbjct: 127 VGNGVLASSAAMDKIVMKKIFADAGIPQVPAVAVRLIDWKNYQEEMVSEMEEVLTYPVFV 186

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--D 188
           KP   GSS+GI      + +   +  + ++ +  ++++EQ V   E+  GV+G+ +    
Sbjct: 187 KPANLGSSVGISKATNKKELEDAM--TEAFLYDRRVVVEQGVVAREIEMGVLGNDTPVCS 244

Query: 189 VTEIAVPKS---DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
           V    +P+     FY Y+ KY   N+  ++P ++  +I ++++  A  A   +   G+ R
Sbjct: 245 VPGEILPEGAVATFYDYKAKYQDNNTALIIPTEVDPEILEQMKEYAVQAFLGLDASGLVR 304

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +DF       ++F  E+N  PG TP S++P +    G  +  L+  +V+ A
Sbjct: 305 ADFFLT-DDNQLFLNEVNTMPGFTPYSMYPLLWQETGLPYSALIERLVDLA 354


>gi|88811835|ref|ZP_01127088.1| D-alanylalanine synthetase [Nitrococcus mobilis Nb-231]
 gi|88790719|gb|EAR21833.1| D-alanylalanine synthetase [Nitrococcus mobilis Nb-231]
          Length = 315

 Score =  294 bits (754), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 94/295 (31%), Positives = 147/295 (49%), Gaps = 8/295 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+ERE+SL SG     AL   G +   ID D      L     D AF  LHG
Sbjct: 17  VAVLAGGWSAEREISLQSGAVVLEALRRRGVEAHHIDPDERPLGALGE--FDRAFIALHG 74

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG++Q  LE++ +PYT +G+L SAL MDK+R+K V  + G+P    + ++      
Sbjct: 75  RGGEDGVIQGALEVMGLPYTGTGVLGSALGMDKLRTKLVWRALGLPTPAFLRLDSEAALD 134

Query: 121 --QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
             +  +  P ++KP + GSSLG+  +    ++     ++    +  ++  E+++DG E T
Sbjct: 135 RVEAELGYPVMVKPNREGSSLGMTRVNGSAALLEAWRKAC--RYDREVFAERWIDGQEYT 192

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             ++G+ +L V  I      FY ++ KY +  +    P  +       +  LA  A +A+
Sbjct: 193 VSLLGEQALPVIRIE-SAGVFYDFDAKYRAAETRLHCPCGLVALAEAALAELAAAAFEAV 251

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           G  G  R D L        + LE+N  PGMT  S+ P  A  AG    EL+  ++
Sbjct: 252 GGSGWGRVD-LLRDAEGVAWLLEVNTVPGMTDHSLVPMAARAAGLDMDELVWRIL 305


>gi|91762848|ref|ZP_01264813.1| D-alanine--D-alanine ligase B [Candidatus Pelagibacter ubique
           HTCC1002]
 gi|91718650|gb|EAS85300.1| D-alanine--D-alanine ligase B [Candidatus Pelagibacter ubique
           HTCC1002]
          Length = 304

 Score =  294 bits (754), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 114/307 (37%), Positives = 179/307 (58%), Gaps = 14/307 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + +L GGIS ER +SL +GK  A  L   G+KV   + D+++   +   KPD+ FN LHG
Sbjct: 5   ILILSGGISKERLISLDTGKQVAKELIKNGYKVLISEPDKNLSKNITSFKPDVIFNALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119
            FGEDG +QAILE  +IPYTHSG++AS+++MDK  SK++     +     I  N      
Sbjct: 65  QFGEDGYIQAILETKKIPYTHSGVIASSIAMDKEISKKIFIKNKILTPRYIKFNHKKNKL 124

Query: 120 -----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
                 + ++  P V+KP+  GSS+ + +  K       +    +    +++LIE+++ G
Sbjct: 125 NIIKLIEKILKFPVVVKPINEGSSVHVYICDKTNI----IKNLKALKSYNEILIEEFIPG 180

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYS-SLNSTHVLPAKIPLDIYKEVQRLAFL 233
            E+   +M + SL   E+  PK  FY YE KY+ S  + H++P  +  +   ++  +A  
Sbjct: 181 REIQVAIMNNKSLGAIELE-PKRKFYDYEAKYNSSAKTKHLIPVDLSKNNQAKITGIARA 239

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           AH+ IGC+G++RSDF F   + K + LEIN QPGMT +S+ PE+A + G SF +L+ W++
Sbjct: 240 AHKIIGCKGVTRSDFKF--FNGKFYLLEINTQPGMTKLSLVPEIAKHKGISFIKLIEWIL 297

Query: 294 EDASCLR 300
           +DAS  R
Sbjct: 298 KDASINR 304


>gi|25027987|ref|NP_738041.1| D-alanyl-alanine synthetase A [Corynebacterium efficiens YS-314]
 gi|39930900|sp|Q8FPQ9|DDL_COREF RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|23493270|dbj|BAC18241.1| putative D-alanine--D-alanine ligase [Corynebacterium efficiens
           YS-314]
          Length = 361

 Score =  294 bits (754), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 98/349 (28%), Positives = 161/349 (46%), Gaps = 57/349 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +AVL GG S+E  VS  S  A  + L+   ++V  + +      V+    P         
Sbjct: 11  VAVLYGGRSAEHSVSCVSAGAIIAHLDPEKYEVIPVGITTDGAWVVGESDPERLRLVDRT 70

Query: 52  ---------------------------------DLAFNVLHGNFGEDGLVQAILELLEIP 78
                                            D+ F VLHG FGEDG +Q +  L +IP
Sbjct: 71  MPEVQRREEIRPSLDPAHRGEFHFADGSLYATADVIFPVLHGRFGEDGTIQGMFALSDIP 130

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN---RFTMDSQHLISPPYVIKPLKG 135
               G+L+SA  MDK  +K+++++ G+P+   +++      T   + L+  P  +KP +G
Sbjct: 131 VVGPGVLSSAAGMDKEFTKKLMAAEGLPIGREVILRDRAELTDAEKKLLGLPVFVKPARG 190

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM------GDASLDV 189
           GSS+GI  + + + +P  +    +  H +++++E  + G E+ CGV+        ASL  
Sbjct: 191 GSSIGISKVSRWEDLPAAVDL--ARQHDEKVIVESEIVGPEVECGVLQYPDGRIVASLPA 248

Query: 190 TEIAV--PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
                   +  FY ++ KY     T  +PA +  +I + VQ LA    QA+ C G++R D
Sbjct: 249 MLRGTEDGEGGFYDFDTKYLDNVVTAEIPAPLDEEIIELVQSLAVETFQALACEGLARVD 308

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           F            EIN  PG TP+S++P+M A +G  + ELL  +V+ A
Sbjct: 309 FFVTA--NGPVLNEINTMPGFTPISMYPQMFAASGVGYEELLDVLVQQA 355


>gi|78185108|ref|YP_377543.1| D-alanyl-alanine synthetase A [Synechococcus sp. CC9902]
 gi|123580800|sp|Q3AV89|DDL_SYNS9 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|78169402|gb|ABB26499.1| D-alanine--D-alanine ligase [Synechococcus sp. CC9902]
          Length = 350

 Score =  294 bits (754), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 95/343 (27%), Positives = 159/343 (46%), Gaps = 49/343 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALED----AGFKVSQIDVDRSVGL--------VLAH 48
           + ++ GG S E EVS+ S       L        ++V    +D+            VLA 
Sbjct: 8   IGLVFGGYSGEHEVSIRSATTVIHGLRSGENSQRYRVIPFYIDQEGRWWGEAFANRVLAS 67

Query: 49  LKP----------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
            KP                       + + VLHG  GEDG VQ + +L+  P+  +G+L 
Sbjct: 68  QKPIEPPHSIETKGFRELPEGSETVQVWYPVLHGPNGEDGTVQGLFQLMRQPFVGAGVLG 127

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-----------QHLISPPYVIKPLKG 135
           SA+SMDK+  K   +  G+   P + +N   +             +  +  P  +KP   
Sbjct: 128 SAVSMDKLAMKAAFAGAGLSQVPYVGLNASDLGDSARREHVLDRIEAELHYPCFVKPANL 187

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195
           GSS+GI  ++    +   L  ++      +L++EQ VD  EL C V+G   L  + +   
Sbjct: 188 GSSVGISKVRNRHELETGLDHAAQL--DPRLVVEQGVDARELECAVLGRHQLRSSVVGEV 245

Query: 196 --KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
              +D+Y Y  KY++  ST V+PA++P  + + VQ+ A  A  A+G  G++R DF +D  
Sbjct: 246 RFDADWYDYTTKYTAGLSTTVIPAELPEGVAERVQQQALEACAALGVVGMARVDFFYDNT 305

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           S +++  EIN  PG T  S++P +   +G +  +L+  +V+ A
Sbjct: 306 SHQLWINEINTLPGFTSQSMYPMLWEASGVTLDQLVHKLVQSA 348


>gi|318056533|ref|ZP_07975256.1| D-alanyl-alanine synthetase A [Streptomyces sp. SA3_actG]
 gi|318076094|ref|ZP_07983426.1| D-alanyl-alanine synthetase A [Streptomyces sp. SA3_actF]
          Length = 389

 Score =  294 bits (754), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 102/363 (28%), Positives = 158/363 (43%), Gaps = 72/363 (19%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +AV+ GG SSE  VS+ +  A   A++   + V  I +       LA  +P         
Sbjct: 24  VAVVFGGRSSEHGVSVVTAGAVLGAIDREKYDVLPIGITGEGRWALAVDEPARMAITDRA 83

Query: 52  -----------------------------------------DLAFNVLHGNFGEDGLVQA 70
                                                    D+ F +LHG +GEDG +Q 
Sbjct: 84  MPTVESLAESLEGSVVLPFDPSVREVVYTEPGSVPKALGEVDVVFPMLHGPYGEDGTLQG 143

Query: 71  ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV------------NRFTM 118
           +LEL   PY  +G+LASA+  DK   K++ +S G+ V P +++             R   
Sbjct: 144 LLELSGTPYVGAGVLASAVGQDKEYMKRIFTSFGLAVGPYLVIRPREWEQDPDAARRRIA 203

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           D       P  +KP +GGSS+GI  +       LD   + +  H  + LIE  V G E+ 
Sbjct: 204 DFAGDHGWPLFVKPARGGSSVGISKVDGFD--GLDEAIAEARRHDPKFLIESLVQGREIE 261

Query: 179 CGVMG-----DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           CGV+       AS+      V    +Y +E KY   +++ ++PA +  +   EVQRLA  
Sbjct: 262 CGVLEFEDGPRASVPAEIPPVTDHAYYDFEAKY-IDSASGLVPAPLTPEETAEVQRLAVA 320

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           A +A  C G+ R+DF            EIN  PG TP+S++P+M   +G  + EL+  ++
Sbjct: 321 AFEATSCEGLVRADFFLT--DDGFVINEINTMPGFTPISMYPQMWEKSGVGYAELVDRLI 378

Query: 294 EDA 296
           + A
Sbjct: 379 QAA 381


>gi|148269801|ref|YP_001244261.1| D-alanyl-alanine synthetase A [Thermotoga petrophila RKU-1]
 gi|166198512|sp|A5IKG2|DDL_THEP1 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|147735345|gb|ABQ46685.1| D-alanine--D-alanine ligase [Thermotoga petrophila RKU-1]
          Length = 303

 Score =  294 bits (753), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 101/301 (33%), Positives = 157/301 (52%), Gaps = 13/301 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK-PDLAFNVLH 59
           +A+LMGG+S ERE+SL SG+    ALE  G++ +  DV       +  LK  D+ FNVLH
Sbjct: 3   VALLMGGVSREREISLRSGERVKKALEKLGYEYTVFDVKEDFLKEVDQLKSFDVVFNVLH 62

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G FGEDG +QAIL+ L I YT S   +S +  DK+ + + +    V +   I +  F   
Sbjct: 63  GTFGEDGTLQAILDFLGIRYTGSDAFSSMICFDKLATYRFLKDI-VEIPDFIEIREFMET 121

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
           S   +  P V+KP + GSS+G+ + + D+     L +         +++++Y+ G E+T 
Sbjct: 122 SP--LGYPCVVKPRREGSSIGVFICESDEEFQHALKEDLP--RYGSVIVQKYIPGREMTV 177

Query: 180 GVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
            ++    G   L + E+  PK  FY Y  KY+   +  +LPA +     + V+  A  A 
Sbjct: 178 SILETEKGFEVLPILELR-PKRRFYDYVAKYTKGETEFILPAPLNPSEERLVKETALKAF 236

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
              GCRG  R D +F   + + ++LEIN  PG+T  S  P  A   G  F EL+  +++ 
Sbjct: 237 VEAGCRGFGRVDGIF--SNGRFYFLEINTVPGLTETSDLPASAKAGGIEFEELVEIILKS 294

Query: 296 A 296
           A
Sbjct: 295 A 295


>gi|190892155|ref|YP_001978697.1| D-alanine-D-alanine ligase [Rhizobium etli CIAT 652]
 gi|190697434|gb|ACE91519.1| D-alanine-D-alanine ligase protein [Rhizobium etli CIAT 652]
          Length = 358

 Score =  294 bits (753), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 94/347 (27%), Positives = 160/347 (46%), Gaps = 51/347 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           +AVL GG S+E EVS+ S      AL    +    I + R    +L+ +           
Sbjct: 10  IAVLFGGRSAEHEVSILSATNVMGALAPEKYDAVPIFISREGQWLLSSIVDGALATPSSG 69

Query: 50  --------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                       D+ F VLHG +GEDG VQ + E+  +P    G
Sbjct: 70  TEICLVPGGRGRMMAIPAGGTPYDLPGIDILFPVLHGPYGEDGSVQGLAEVARVPLAGCG 129

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSL 139
           IL SA ++DK  +K+++ + G+PV  ++ +      S    +  +  P  IKP + GSS+
Sbjct: 130 ILGSAAALDKDIAKRLLRAAGLPVARAVTIRADAAPSLATLESELGLPLFIKPARQGSSV 189

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD-----VTEIAV 194
           G+  +   Q     L  + ++ H   LL E++V G E+   V+ +A+ +       EI  
Sbjct: 190 GVAKVHASQEFAPAL--AEAFRHDHTLLAEEFVAGREIEFSVLENAAGELFVSRPGEIVP 247

Query: 195 PKS-DFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            +S  FY+Y+ KY     +   +PA++P D+   ++ +A  A +A+GC G++R DF    
Sbjct: 248 AESHGFYNYDAKYIDENGAALKVPAELPPDVEATMRDMAAKAFRAVGCDGMARVDFFLT- 306

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
              +    EIN  PG T +S++ +  A +G S+ E++  +V+     
Sbjct: 307 SDMRFLINEINTIPGFTDISMYSKAMAASGVSYAEVIDRLVDHGMAR 353


>gi|253579173|ref|ZP_04856443.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251849271|gb|EES77231.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 350

 Score =  294 bits (753), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 94/339 (27%), Positives = 157/339 (46%), Gaps = 49/339 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-------DRS------------ 41
           + VL GG S+ER VS++SG     AL   G +   +D+       DR             
Sbjct: 3   IVVLAGGTSTERTVSITSGTGICKALRQKGHQAILVDIFCGIENVDRENPFPSEYDVDAA 62

Query: 42  ------VGLVLAHLK-----------------PDLAFNVLHGNFGEDGLVQAILELLEIP 78
                     +  +K                  D+ F  LHG  GEDG VQA  +L+ I 
Sbjct: 63  SEYMSAFNDRIEQMKKERRSFFGPNVLKLCEAADIVFLGLHGANGEDGKVQATFDLMGIK 122

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---ISPPYVIKPLKG 135
           YT +G L+SAL+MDK  +KQ+     VP    + + +  M +      +  P V+K   G
Sbjct: 123 YTGTGYLSSALAMDKGITKQMFLMNNVPTPRGVSMVKEEMTTDLKALGMEFPVVVKTCCG 182

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195
           GSS+G+ ++         L    ++++ +++++E+Y+ G E +  V+   +  + EIA P
Sbjct: 183 GSSVGVYIVNDQAEYEQALKD--AYSYENEVVVEEYIKGREFSVAVVDGKAYPIIEIA-P 239

Query: 196 KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255
              FY Y+ KY + ++    PA+I  ++ +++Q  A    +A+   G  R DF+    + 
Sbjct: 240 LQGFYDYKNKYQAGSTIETCPAEISPELTEKMQHYAEAGAKALFMEGYCRLDFMM-KENG 298

Query: 256 KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            ++ LE N  PGMTP S+ P+ A   G  +  L   ++E
Sbjct: 299 DMYCLEANTLPGMTPTSLIPQEAKVLGIDYPTLCEKLIE 337


>gi|307243887|ref|ZP_07526012.1| D-ala D-ala ligase N-terminal domain protein [Peptostreptococcus
           stomatis DSM 17678]
 gi|306492709|gb|EFM64737.1| D-ala D-ala ligase N-terminal domain protein [Peptostreptococcus
           stomatis DSM 17678]
          Length = 298

 Score =  294 bits (753), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 89/299 (29%), Positives = 144/299 (48%), Gaps = 7/299 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AV+ GGISSERE+SL SGKA    L+   ++V    +D    +       D+A   LHG
Sbjct: 3   VAVIYGGISSEREISLRSGKAIIDNLDRNKYEVIGCQIDEMTDVFKIDNDIDIALIGLHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG+VQ+ILE   I Y     L S + MDK  +K +     +       V       
Sbjct: 63  KFGEDGVVQSILEAKGIKYCGCNPLTSGILMDKNYTKTIARQNNLLTADWTSVKSVEEID 122

Query: 121 ---QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
                 +  P  IKP  GGSS+    IK  + +   + +     + + +LIE+YV G+E 
Sbjct: 123 YGLIDRMGYPVFIKPNSGGSSVATFFIKDKKDVENAVREGL--KYDEIVLIEKYVKGVEY 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           T  ++         I    ++F+ +E KYS+ N       ++  ++ K+++  +    + 
Sbjct: 181 TSFILNGQVFPTIRI-TSDNEFFDFEAKYSTTNGAREEVVELSPELDKKLKEASNTCWKV 239

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             C+G  R D++     + V+ LE+N  PGMT  S+ P+ A   G S++ LL  ++E +
Sbjct: 240 FNCKGYVRVDYIITE-DQDVYLLELNTLPGMTETSLIPKSAKAMGISYKGLLDKLIESS 297


>gi|302525004|ref|ZP_07277346.1| D-alanylalanine synthetase [Streptomyces sp. AA4]
 gi|302433899|gb|EFL05715.1| D-alanylalanine synthetase [Streptomyces sp. AA4]
          Length = 365

 Score =  294 bits (753), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 96/356 (26%), Positives = 157/356 (44%), Gaps = 60/356 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +AV+ GG SSE  +S  S  +  S L+   F+V  + V  S G VL    P         
Sbjct: 8   VAVVFGGRSSEHTISCLSAGSVISNLDPDRFEVLPVGVTPSGGWVLGTGDPQQLSIRGRE 67

Query: 52  ------------------------------------DLAFNVLHGNFGEDGLVQAILELL 75
                                               D+ F VLHG FGEDG +Q +LEL 
Sbjct: 68  LPSVESGRALVLAGDPTSRELRTVDPGQATEVLGTVDVVFPVLHGAFGEDGTIQGLLELA 127

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT----MDSQHLISPPYVIK 131
           ++PY   G+ ASA +MDK  +K+++++ G+PV     + R         +  +  P  +K
Sbjct: 128 DLPYVGPGVFASAAAMDKEYAKKLLAAEGLPVGTYAALRRGQSTLAEADRERLGLPVFVK 187

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG------DA 185
           P + GSS+GI  +       LD     +     ++L+E  V G E+ CGV+       +A
Sbjct: 188 PSRAGSSVGISRV--ADWADLDAAIELARRTDPKVLVEAAVRGREVECGVLEFPDGRVEA 245

Query: 186 SLDVTEIAVPKSD--FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           SL      + + +  +Y +E KY   ++   +PAK+   +   ++ +A  A +A+ C+G+
Sbjct: 246 SLPAEIRVLAEGEDAWYDFETKYLGEDAELDIPAKLDDALTDRLRAMAVEAFRALDCQGL 305

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
           +R DF        +   E+N  PG T  S +P+M    G  +  LL  +++ A   
Sbjct: 306 ARVDFFVTE-EGDLVINEVNTMPGFTTKSAYPKMWEVTGVDYPTLLSTLIDTALAR 360


>gi|161779891|gb|ABX79437.1| VanC1 [Enterococcus gallinarum]
          Length = 343

 Score =  294 bits (753), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 94/338 (27%), Positives = 166/338 (49%), Gaps = 45/338 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL-----VLAHLK----- 50
           +AVL GG S E  VSL+S  +   A++   ++V  I +  ++        LA+++     
Sbjct: 4   IAVLFGGNSPEYSVSLASAASVIQAIDPLKYEVMTIGIAPTMDWYWYQGNLANVRNDTWL 63

Query: 51  ------------------------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
                                   PD+ F VLHG +GEDG +Q +LEL+ +PY    + A
Sbjct: 64  EDHKNCHQLTFSSQGFILGEKRIVPDVLFPVLHGKYGEDGCIQGLLELMNLPYVGCHVAA 123

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIKPLKGGSSLG 140
           +AL M+K    Q+  + G+   P++L++R+  D   +         P  IKP + GSS G
Sbjct: 124 TALCMNKWLLHQLADTMGIASAPTLLLSRYENDPATIDRFIQDHGFPIFIKPNEAGSSKG 183

Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK--SD 198
           I  +    ++   L  ++++ +G  +LI++ + GIE+ CG++G+  L +           
Sbjct: 184 ITKVTDKTALQSAL--TTAFAYGSTVLIQKAIAGIEIGCGILGNEQLTIGACDAISLVDG 241

Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
           F+ +E KY  +++T  +PA +PL +  +++  A L ++ +G  G++R DF        ++
Sbjct: 242 FFDFEEKYQLISATITVPAPLPLALESQIKEQAQLLYRNLGLTGLARIDFFVTNQ-GAIY 300

Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             EIN  PG T  S +P M A  G S+  L+  ++  A
Sbjct: 301 LNEINTMPGFTGHSRYPAMMAEVGLSYEILVEQLIALA 338


>gi|5353567|gb|AAD42184.1|AF130997_5 D-alanine:D-lactate ligase [Enterococcus faecium]
          Length = 343

 Score =  294 bits (753), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 83/336 (24%), Positives = 149/336 (44%), Gaps = 45/336 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +AVL GG S E  VS+ S    A+ ++   ++   I + +S    +              
Sbjct: 6   VAVLFGGCSEEHNVSIKSAMEIAANIDTKKYQPYYIGITKSGVWKMCEKPCLEWEQYAGD 65

Query: 52  --------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
                                     D+ F ++HG FGEDG +Q +LEL  IPY    I 
Sbjct: 66  PVVFSPDRSTHGLLIQKDKGYEIQPVDVVFPMIHGKFGEDGSIQGLLELSGIPYVGCDIQ 125

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145
           +S + MDK  +  VV + G+ V    ++             P  +KP + GSS G+  + 
Sbjct: 126 SSVICMDKALAYTVVKNAGITVPGFRILQEGDRLETEDFVYPVFVKPARSGSSFGVNKVC 185

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYS 201
           K + +   +    +  +  ++LIE+ V G E+ C ++G+     + +V +I +    F  
Sbjct: 186 KAEELQAAI--EEARKYDSKILIEEAVTGSEVGCAILGNGNDLMAGEVDQIELRHGFFKI 243

Query: 202 Y---ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
           +   + +  S N+   +PA +P ++ +++Q  A   ++ +GCRG++R D         + 
Sbjct: 244 HQEAQPEKGSENAVIRVPAALPDEVREQIQETAMKIYRILGCRGLARIDLFLRE-DGCIV 302

Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             E+N  PG T  S +P M   AG++  E+L  ++E
Sbjct: 303 LNEVNTMPGFTSYSRYPRMMTAAGFTLSEILDRLIE 338


>gi|154503509|ref|ZP_02040569.1| hypothetical protein RUMGNA_01333 [Ruminococcus gnavus ATCC 29149]
 gi|153795609|gb|EDN78029.1| hypothetical protein RUMGNA_01333 [Ruminococcus gnavus ATCC 29149]
          Length = 351

 Score =  294 bits (753), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 97/351 (27%), Positives = 160/351 (45%), Gaps = 55/351 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40
           + VL GG+S+ER+VSL+S       L + G     +DV                      
Sbjct: 3   IIVLAGGLSTERDVSLASAAGICKTLLEKGHDAFLLDVFLGLENAPENLEDVFTLPGHGL 62

Query: 41  SVGLVLAHLKPDLA----------------------------FNVLHGNFGEDGLVQAIL 72
            +   ++  +PDLA                            F  LHG  GE+G +QA  
Sbjct: 63  EIAKNISETEPDLAAVKASRPDQSDCFFGPNVIELCRLADMTFLGLHGGEGENGKLQASF 122

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD---SQHLISPPYV 129
           +LL I YT    L  A++MDK  +KQ+    GV     + + +   D       +S P V
Sbjct: 123 DLLGIRYTGPDSLGCAVAMDKGLTKQIFMEAGVDTPSGVCLYKEDSDCSLESLGLSFPVV 182

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           +KP  GGSS+G+ ++  ++     L    S+ + +++++E Y+ G E  CGV+   +L  
Sbjct: 183 VKPCSGGSSIGVYIVNTEEEYRQALKN--SFRYENEVVVETYIKGREFACGVIDGKALPP 240

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
            EI +PK+ ++ Y  KY +  +  V PA I  +I + ++ L   A QA+     SR+DF+
Sbjct: 241 IEI-IPKNGWFDYANKYQANATEEVCPADISEEIAERMKALTVRAFQALKLNVYSRADFI 299

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
            D     ++ LE+N  PGMT  S+ P+ A   G  + +L   +++ +   R
Sbjct: 300 LDA-DGNLYCLEMNTLPGMTSASLLPKEALADGIEYGDLCELIIQKSMEAR 349


>gi|5305926|gb|AAD41882.1|AF153050_3 D-alanine:D-lactate ligase [Enterococcus faecium]
 gi|222159814|gb|ACM47287.1| D-Ala:D-Lac ligase VanD [Enterococcus faecium]
          Length = 343

 Score =  294 bits (753), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 82/336 (24%), Positives = 150/336 (44%), Gaps = 45/336 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +AVL GG S E  VS+ S    A+ ++   ++   I + +S    +              
Sbjct: 6   VAVLFGGCSEEHNVSIKSAMEIAANIDTKKYQPYYIGITKSGVWKMCEKPCLGWEQYAGD 65

Query: 52  --------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
                                     D+ F ++HG FGEDG +Q +LEL  IPY    I 
Sbjct: 66  PVVFSPDRSTHGLLIQKDTGYEIQPVDVVFPMIHGKFGEDGSIQGLLELSGIPYVGCDIQ 125

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145
           +S + MDK  +  VV + G+ V    ++          +  P  +KP + GSS G+  + 
Sbjct: 126 SSVICMDKALAYTVVKNAGIAVPGFRILQEGDRLETEDLVYPVFVKPARSGSSFGVNKVC 185

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYS 201
           K + +   +    +  +  ++LIE+ V G E+ C ++G+     + +V +I +    F  
Sbjct: 186 KAEELQAAI--REARKYDSKILIEEAVTGSEVGCAILGNENDLMAGEVDQIELRHGFFKI 243

Query: 202 Y---ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
           +   + +  S N+   +PA +P ++ + +++ A   ++ +GCRG++R D         + 
Sbjct: 244 HQEAQPEKGSENAVIRVPAALPDEVRERIRKTAMKIYRILGCRGLARIDLFLRE-DGCIV 302

Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             E+N  PG T  S +P M   AG++  E+L  ++E
Sbjct: 303 LNEVNTMPGFTSYSRYPRMMTAAGFTLSEILDRLIE 338


>gi|256786904|ref|ZP_05525335.1| D-alanine:D-lactate ligase [Streptomyces lividans TK24]
 gi|289770797|ref|ZP_06530175.1| D-alanine:D-lactate ligase [Streptomyces lividans TK24]
 gi|289700996|gb|EFD68425.1| D-alanine:D-lactate ligase [Streptomyces lividans TK24]
          Length = 346

 Score =  294 bits (753), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 91/342 (26%), Positives = 146/342 (42%), Gaps = 45/342 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           + ++ GG S E  VS+ S +  A  L+   ++   + + +     L              
Sbjct: 6   VGIVFGGSSEEHAVSVKSAQEVARNLDTEKYQPFFVGITKDGAWRLCDGPGPDWENGDCR 65

Query: 47  ---------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
                                  ++ D+   VLHG  GEDG  Q +LEL  IPY    + 
Sbjct: 66  PVVLSPDRSVHGLLVLEQGRYRSVRLDVVLPVLHGTLGEDGATQGLLELSGIPYVGCDVQ 125

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145
           +SAL MDK  +  V  S G+       V          ++ P  +KP + GSS G+  + 
Sbjct: 126 SSALCMDKSLAYVVARSAGIATPDFWTVTGDETIDPGRLTYPVFVKPARSGSSFGVSKVC 185

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYS 201
           + + +   +   S+  +  ++LIE  V G E+ C ++G+       +V  IA+    F  
Sbjct: 186 RPEDLATAV--ESARRYDTKVLIEAAVVGSEVGCAILGNDLDLIVGEVDRIALSHGFFRI 243

Query: 202 YELKY---SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
           ++ +     S NST V+PA IP +    VQ  A   ++A+GCRG+SR D        +V 
Sbjct: 244 HQEEQPENGSENSTPVVPADIPTEKRSLVQETAKAVYRALGCRGLSRVDMFL-KEDGEVV 302

Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
             E+N  PGMT  S +P M A AG    E++   +  A   +
Sbjct: 303 LNEVNTLPGMTSYSRYPRMMAAAGLPLSEVIDRTLSLALTGK 344


>gi|46907086|ref|YP_013475.1| D-alanyl-alanine synthetase A [Listeria monocytogenes serotype 4b
           str. F2365]
 gi|47092061|ref|ZP_00229854.1| D-alanine--D-alanine ligase [Listeria monocytogenes str. 4b H7858]
 gi|226223473|ref|YP_002757580.1| D-alanine--D-alanine ligase [Listeria monocytogenes Clip81459]
 gi|254852347|ref|ZP_05241695.1| D-Ala-D-Ala ligase [Listeria monocytogenes FSL R2-503]
 gi|254931236|ref|ZP_05264595.1| D-Ala-D-Ala ligase [Listeria monocytogenes HPB2262]
 gi|255522056|ref|ZP_05389293.1| D-alanyl-alanine synthetase A [Listeria monocytogenes FSL J1-175]
 gi|67460120|sp|Q721W2|DDL_LISMF RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|46880353|gb|AAT03652.1| D-alanine--D-alanine ligase [Listeria monocytogenes serotype 4b
           str. F2365]
 gi|47019501|gb|EAL10241.1| D-alanine--D-alanine ligase [Listeria monocytogenes str. 4b H7858]
 gi|225875935|emb|CAS04639.1| D-alanine--D-alanine ligase [Listeria monocytogenes serotype 4b
           str. CLIP 80459]
 gi|258605653|gb|EEW18261.1| D-Ala-D-Ala ligase [Listeria monocytogenes FSL R2-503]
 gi|293582785|gb|EFF94817.1| D-Ala-D-Ala ligase [Listeria monocytogenes HPB2262]
 gi|328467129|gb|EGF38219.1| D-alanyl-alanine synthetase A [Listeria monocytogenes 1816]
 gi|328475551|gb|EGF46310.1| D-alanyl-alanine synthetase A [Listeria monocytogenes 220]
 gi|332311262|gb|EGJ24357.1| D-alanine--D-alanine ligase [Listeria monocytogenes str. Scott A]
          Length = 370

 Score =  294 bits (753), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 87/351 (24%), Positives = 159/351 (45%), Gaps = 60/351 (17%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---LAHLKPD------- 52
           +L GG S+E EVSL +  +  +AL+   F+ + I +      +   L   K D       
Sbjct: 7   LLYGGKSAEHEVSLQTAFSVINALDLEKFEAAPIYITNEGEWIQGPLLSGKLDFVEQLRF 66

Query: 53  ---------------------------------LAFNVLHGNFGEDGLVQAILELLEIPY 79
                                            + F +LHG  GEDG VQ + E+L IPY
Sbjct: 67  SATDTIKLATTESEKSEGEAISPAVLEADGQETVVFPLLHGPNGEDGTVQGLFEVLNIPY 126

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVN---------RFTMDSQHLISPPYVI 130
             +G+LAS+ +MDK+  K++ +  G+P  P++ V              + + +++ P  +
Sbjct: 127 VGNGVLASSAAMDKIVMKKIFADAGIPQVPAVAVRLIDWKNYQAEMVAEMEEVLTYPVFV 186

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--D 188
           KP   GSS+GI      + +      + ++ +  ++++EQ V   E+  GV+G+ +    
Sbjct: 187 KPANLGSSVGISKATNKKEL--ADAMTEAFLYDRRVVVEQGVVAREIEMGVLGNDTPVCS 244

Query: 189 VTEIAVPKS---DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
           V    +P+     FY Y+ KY   N+  ++P ++  +I ++++  A  A   +   G+ R
Sbjct: 245 VPGEILPEGAVATFYDYKAKYQDNNTALIIPTEVDPEILEQMKEYAVQAFLGLDASGLVR 304

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +DF       ++F  E+N  PG TP S++P +    G  +  L+  +V+ A
Sbjct: 305 ADFFLTE-DNQLFLNEVNTMPGFTPYSMYPLLWQETGLPYGALIERLVDLA 354


>gi|313893662|ref|ZP_07827230.1| D-ala D-ala ligase N-terminal domain protein [Veillonella sp. oral
           taxon 158 str. F0412]
 gi|313441806|gb|EFR60230.1| D-ala D-ala ligase N-terminal domain protein [Veillonella sp. oral
           taxon 158 str. F0412]
          Length = 310

 Score =  294 bits (753), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 102/305 (33%), Positives = 166/305 (54%), Gaps = 12/305 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59
           + VLMGG S E EVS  +G A A AL   G+K   ++++ R+V   +  L  ++ FN +H
Sbjct: 6   IIVLMGGPSEEAEVSRRTGAAIAEALVSKGYKAQTLELNPRTVLKDIDSLGGEVVFNAIH 65

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G +GEDG +Q +LE+ EIPYT SGI+A A+ M+K  SK V     +P   S   N     
Sbjct: 66  GRYGEDGALQGLLEMAEIPYTGSGIMAHAVGMNKKVSKDVFKGANIPTARSESYNGNLES 125

Query: 120 SQHLI-------SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
           ++ +I       + P V+K    GSS+G+ +++++  +   +  + +  +   L++EQ++
Sbjct: 126 AEAIIDHIRKEFTIPVVVKSATQGSSIGVTIVREESQLEAAV--TEALKYDPILVVEQFL 183

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
           DG E T  V+   +L V EI  P S  Y Y+ KY+   + +++PA I  ++  E+QR+  
Sbjct: 184 DGREFTVAVLDGKALSVIEIR-PHSGEYDYKSKYTVGATEYLVPAPISDEMTAEMQRIGE 242

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           L ++ +   G+ R D + D    K++ LE N  PGMT  S+ P+ A   G  F  L   +
Sbjct: 243 LVYREVQGSGVIRVDIMTDHAD-KMYVLEYNTVPGMTATSLVPKAANEMGIDFPTLCEKI 301

Query: 293 VEDAS 297
           +  AS
Sbjct: 302 LLTAS 306


>gi|251782869|ref|YP_002997172.1| D-alanylalanine synthetase [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|242391499|dbj|BAH81958.1| D-alanylalanine synthetase [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|323127673|gb|ADX24970.1| D-alanyl-alanine synthetase A [Streptococcus dysgalactiae subsp.
           equisimilis ATCC 12394]
          Length = 348

 Score =  294 bits (753), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 89/334 (26%), Positives = 160/334 (47%), Gaps = 41/334 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           + +L GG S+EREVS+ S ++   A+    F V    + ++   +               
Sbjct: 6   LVLLYGGRSAEREVSVLSAESVMRAVNYDKFLVKTYFISQTGQFIKTQEFSEKPAATERL 65

Query: 46  --------LAHLKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
                      +KP        + F VLHG  GEDG +Q  LE+L +PY  + IL+S+++
Sbjct: 66  MTNSTIQYEQQIKPSDIYEEDAVVFPVLHGPMGEDGSIQGFLEVLRMPYVGTNILSSSVA 125

Query: 91  MDKMRSKQVVSSCGVPVCPS-ILVNRFTMDS-----QHLISPPYVIKPLKGGSSLGIIVI 144
           MDK+ +K+V+ S G+P     + ++   +++        ++ P  +KP   GSS+GI   
Sbjct: 126 MDKITTKRVLESAGIPQVAYTVYIDGQDLEACLTETLATLAFPIFVKPANMGSSVGISKA 185

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202
           +  + +   +  +    +  ++LIEQ V   E+  G++G+  +  T     V   +FY Y
Sbjct: 186 QTKEELKEAIQLAL--TYDSRVLIEQGVVAREIEVGLLGNTEVKSTLPGEVVKDVEFYDY 243

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
           + KY     T  +PA+I  D   +++  A  A +A+G  G+SR DF       +++  E+
Sbjct: 244 KAKYIDNKITMAIPAEIDQDTMTKMRTYAESAFKALGGCGLSRCDFFLS-QDGQIYLNEL 302

Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           N  PG T  S++P +    G ++ +L+  +V  A
Sbjct: 303 NTMPGFTQWSMYPLLWENMGLAYSDLIEELVTLA 336


>gi|118496775|ref|YP_897825.1| D-alanine-D-alanine ligase B [Francisella tularensis subsp.
           novicida U112]
 gi|190359133|sp|A0Q4A6|DDL_FRATN RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|118422681|gb|ABK89071.1| D-alanine-D-alanine ligase B [Francisella novicida U112]
 gi|328676235|gb|AEB27105.1| D-alanine--D-alanine ligase [Francisella cf. novicida Fx1]
          Length = 296

 Score =  294 bits (753), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 105/297 (35%), Positives = 162/297 (54%), Gaps = 8/297 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-DRSVGLVLAHLKPDLAFNVLH 59
           + VL GG S EREVSL SGKA   +L   G+    +D   + +   L  LKPD  F  LH
Sbjct: 6   IVVLYGGDSPEREVSLKSGKAVLDSLISQGYDAVGVDASGKELVAKLLELKPDKCFVALH 65

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G  GE+G V A+LE+LEI +T S + +S ++MDKM SK+++    +P   +  +    + 
Sbjct: 66  GEDGENGRVSALLEMLEIKHTSSSMKSSVITMDKMISKEILMHHRMPTPMAKFLT-DKLV 124

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
           ++  IS P  +KP  GGSS+    +K  Q +     ++S +    +++IEQ+V G E+T 
Sbjct: 125 AEDEISFPVAVKPSSGGSSIATFKVKSIQELKHAYEEASKY---GEVMIEQWVTGKEITV 181

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
            ++ D       I  P+++FY YE KYS   S +  P+ +      EV++LA  A+  +G
Sbjct: 182 AIVNDEVYSSVWIE-PQNEFYDYESKYS-GKSIYHSPSGLCEQKELEVRQLAKKAYDLLG 239

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           C G +R DF++D      + +EIN  PGMT  S+ P+ AA  G  F   +  ++E A
Sbjct: 240 CSGHARVDFIYDDRGN-FYIMEINSSPGMTENSLSPKSAAAEGVDFDSFVKRIIEQA 295


>gi|284032723|ref|YP_003382654.1| D-alanine/D-alanine ligase [Kribbella flavida DSM 17836]
 gi|283812016|gb|ADB33855.1| D-alanine/D-alanine ligase [Kribbella flavida DSM 17836]
          Length = 377

 Score =  294 bits (753), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 95/362 (26%), Positives = 155/362 (42%), Gaps = 66/362 (18%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD-------- 52
           +AV+ GG SSE  +S  +      A++   + V  + +  S   VL    PD        
Sbjct: 14  VAVVFGGRSSEHAISCITAANVLQAIDRDKYDVVPVGITTSGHWVLESADPDRLSITDGK 73

Query: 53  -----------------------------------LAFNVLHGNFGEDGLVQAILELLEI 77
                                              + F +LHG +GEDG +Q +LE+ +I
Sbjct: 74  LPEVDVTAAPVLFGADRELVVSEPDQVPSTLGEVDVVFPLLHGPWGEDGTLQGLLEMSDI 133

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ--------HLISPPYV 129
            Y  SG+LASA+ MDK   K V ++ G+ V P +++                  +  P  
Sbjct: 134 RYVGSGVLASAVGMDKHYMKVVFAAAGLEVGPYVVIRDRDWTRDPQACRTAVDQLGYPVF 193

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLD 188
           +KP +GGSSLGI  +     +   + ++ +  H  ++++E  V    E+  GV+G  +  
Sbjct: 194 VKPARGGSSLGISKVTSLDELDAAIAEARA--HDPKVIVEASVKNPREIEVGVLGGLNGG 251

Query: 189 VTEIAV--------PKSDFYSYELKYSSLNSTHV---LPAKIPLDIYKEVQRLAFLAHQA 237
           + +++V           DFY +E KY      +    +PA +P  I  E++  A  A  A
Sbjct: 252 LPQVSVCGEVAVSGGGHDFYDFETKYLPEGEQYTALSVPADLPEQIAAEIRAKALTAFDA 311

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           I   G++R DF  D    +V   EIN  PG TP S+FP + A +G  +  L+  ++  A 
Sbjct: 312 IEGEGLARVDFFVDE-DGRVLINEINTMPGFTPTSMFPRLWAASGMDYPSLVDHLLTLAQ 370

Query: 298 CL 299
             
Sbjct: 371 TR 372


>gi|8100679|gb|AAF72363.1|AF192329_24 VanB [Enterococcus faecalis]
          Length = 342

 Score =  294 bits (753), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 86/337 (25%), Positives = 147/337 (43%), Gaps = 44/337 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           +A++ GG S E +VS+ S    A+ +    F    I + ++    L              
Sbjct: 6   VAIIFGGCSEEHDVSVKSAIEIAANINTEKFDPHYIGITKNGVWKLCKKPCTEWEADSLP 65

Query: 47  --------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
                                  + D+AF VLHG  GEDG +Q + EL  IPY    I +
Sbjct: 66  AILSPDRKTHGLLVMKESEYETRRIDVAFPVLHGKCGEDGAIQGLFELSGIPYVGCDIQS 125

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           SA  MDK  +  +  + G+ V    ++++        ++ P  +KP + GSS G+  +  
Sbjct: 126 SAACMDKSLAYILTKNAGIAVPEFQMIDKGDKPEAGALTYPVFVKPARSGSSFGVTKVNG 185

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSY 202
            + +   +   ++  +  ++LIEQ + G E+ C VMG+       +V +I +    F  +
Sbjct: 186 TEELNAAI--EAAGQYDGKILIEQAISGCEVGCAVMGNEDDLIVGEVDQIRLSHGIFRIH 243

Query: 203 ---ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
              E +  S N+   +PA IP++    VQ  A   ++ +GCRG++R D         +  
Sbjct: 244 QENEPEKGSENAMITVPADIPVEERNRVQETAKKVYRVLGCRGLARVDLFLQE-DGGIVL 302

Query: 260 LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            E+N  PG T  S +P M A AG +   L+  ++  A
Sbjct: 303 NEVNTLPGFTSYSRYPRMVAAAGITLPALIDSLITLA 339


>gi|329947089|ref|ZP_08294465.1| D-ala D-ala ligase protein [Actinomyces sp. oral taxon 170 str.
           F0386]
 gi|328526266|gb|EGF53283.1| D-ala D-ala ligase protein [Actinomyces sp. oral taxon 170 str.
           F0386]
          Length = 388

 Score =  294 bits (753), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 90/362 (24%), Positives = 156/362 (43%), Gaps = 69/362 (19%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +AV+ GG S E  +S ++     SA++   ++V  + +      VL    P         
Sbjct: 21  VAVVFGGRSGEHTISCATAAGVLSAIDRDRYEVLPVGITPEGRWVLVEDDPAALELSDSR 80

Query: 52  --------------------------------------DLAFNVLHGNFGEDGLVQAILE 73
                                                 D+   +LHG +GEDG +Q +LE
Sbjct: 81  PPVQITTDGLGQGALSAPLGGGELTVLGPTGPRVLGQIDVVLPLLHGPYGEDGTIQGMLE 140

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--------DSQHLIS 125
           ++ + Y   G+LASA  MDK  +K ++ + G+   P ++V             D+   +S
Sbjct: 141 MMGVSYVGCGVLASAAGMDKQVTKVLLGAAGIATAPHVVVGPHAWKRDPEVILDACRSLS 200

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            P  +KP + GSSLGI  +++ + +P  +  + +     ++L+E  + G E+   V+   
Sbjct: 201 YPLFVKPARAGSSLGISKVERPEDLPGAIEAARA--IDPKVLVESGIVGREVEVAVLEGR 258

Query: 186 SLDVTEIAVPK----------SDFYSYELKYSSLNST-HVLPAKIPLDIYKEVQRLAFLA 234
             D   +A P            +FY +E KY + ++   V PA+I  +    +   A  A
Sbjct: 259 GDDAPRVAEPGEIAMDASHGAGEFYDFETKYLAHDAVAMVCPARIGPEERALIMDTAARA 318

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            +A+GC G++R DF        V   EIN  PG TP S++P M   +G  + +L+  ++E
Sbjct: 319 FEAVGCEGLARVDFFLTEAGEAV-VNEINTMPGFTPFSMYPYMWQVSGLGYTDLVSELIE 377

Query: 295 DA 296
            A
Sbjct: 378 LA 379


>gi|313837545|gb|EFS75259.1| D-ala D-ala ligase [Propionibacterium acnes HL037PA2]
 gi|314927576|gb|EFS91407.1| D-ala D-ala ligase [Propionibacterium acnes HL044PA1]
 gi|314972484|gb|EFT16581.1| D-ala D-ala ligase [Propionibacterium acnes HL037PA3]
 gi|328907845|gb|EGG27608.1| D-alanine--D-alanine ligase [Propionibacterium sp. P08]
          Length = 365

 Score =  294 bits (753), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 90/355 (25%), Positives = 148/355 (41%), Gaps = 62/355 (17%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50
           +AV+ GG+SSE  +S  S     +A++   F VS + +      V   +           
Sbjct: 6   VAVIFGGMSSEHSISCLSAANVVAAIDTERFDVSGVGISPEGVWVRYEVDEIFALPSTGQ 65

Query: 51  --------------------------------PDLAFNVLHGNFGEDGLVQAILELLEIP 78
                                             + F VLHG FGEDG +Q +LE+  + 
Sbjct: 66  LPTVEVSDHPLVSVKQMPGGTCIVDTEGNADVVQVVFPVLHGPFGEDGTIQGLLEMAGVR 125

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--------DSQHLISPPYVI 130
           Y   G+ ASA  MDK  +K +++  GV V P ++V              +   +  P  +
Sbjct: 126 YVGCGVAASANCMDKHLTKMILAEAGVLVGPYVVVRDHEWREDRDAILKAAAHLEYPLFV 185

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190
           KP +GGSS+GI  +     +   +   ++  H  ++LIEQ + G E+ C V+        
Sbjct: 186 KPARGGSSIGISRVTNPDGLEAAI--EAAREHDSKVLIEQGIQGREIECSVLDGRHGAAP 243

Query: 191 EIAVPK-------SDFYSYELKYSSLN--STHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241
             + P          FY +E KY S    ++    A +  +    VQ++A  A + +GC 
Sbjct: 244 RASAPGEIVLHDPDGFYDFEAKYLSGGQKASVHARANLDDETRIRVQKVATKAFRVLGCE 303

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           G++R D    P    V+  E N  PG T  S FP M   +G ++ +++  ++E A
Sbjct: 304 GLARIDTFVTP-DGAVYVNEPNTMPGFTRSSGFPLMWQASGMTYAQIVSELIELA 357


>gi|324990632|gb|EGC22568.1| D-alanine-D-alanine ligase [Streptococcus sanguinis SK353]
          Length = 353

 Score =  294 bits (753), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 95/339 (28%), Positives = 158/339 (46%), Gaps = 44/339 (12%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQ--------------------------- 35
           +L GG S+EREVS+ S ++   A+    F V                             
Sbjct: 13  LLYGGRSAEREVSVLSAESVMRAVNYDRFSVKTYFITKDGDFIQTQEFEAKPAADEKLMT 72

Query: 36  ---IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
              +D+ R +     +    + F VLHG  GEDG +Q  LE+L++PY    IL+S L+MD
Sbjct: 73  NATVDMSRKIKPSDIYEDGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNILSSGLAMD 132

Query: 93  KMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           K+ +K+V+ S G+   P + +           + +  ++ P   KP   GSS+GI   + 
Sbjct: 133 KITTKRVLESAGIAQVPYVALVDGEDLEEKIQEIEEKLTYPVFTKPSNMGSSVGISKSEN 192

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYEL 204
              +   L    ++ +  ++L+EQ V   E+  G++G+  +  T     V    FY YE 
Sbjct: 193 RAELRASLDL--AFKYDSRVLVEQGVTAREIEVGLLGNVDVKSTLPGEVVKDVAFYDYEA 250

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           KY     T  +PAKI  ++   +++ A  A +A+G  G+SR DF +     +VF  E+N 
Sbjct: 251 KYIDNKITMDIPAKISEEVVSLMRQNAEAAFRALGGLGLSRCDFFYTE-DGQVFLNELNT 309

Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMV---EDASCLR 300
            PG T  S++P +    G ++ +L+  +V   E+A   R
Sbjct: 310 MPGFTQWSMYPLLWENMGLAYPDLIEKLVGLAEEAFAKR 348


>gi|315937117|gb|ADU56124.1| hypothetical protein CA915-3 [uncultured organism CA915]
          Length = 346

 Score =  293 bits (752), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 93/342 (27%), Positives = 151/342 (44%), Gaps = 45/342 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           + ++ GG+S E  +S+ S K  A AL+   ++   I + R     L              
Sbjct: 6   IGIVFGGVSEEHPISIKSAKEVAKALDTEKYEPFWIGITRDGTWKLCDGPGADWESGNCR 65

Query: 47  ---------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
                                  +  D+   VLHG  GEDG +Q +LEL  IPY    I 
Sbjct: 66  PAVLSPDRGTHGLLVMDSGRYETINLDVVLPVLHGKLGEDGAMQGLLELSGIPYAGCDIQ 125

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145
           +SA+ MDK  +  V+SS G+      +V    M     +  P  +KP + GSS G+  + 
Sbjct: 126 SSAVCMDKSLTYAVISSAGIRTPEFWVVTADEMPDAEQLVYPVFVKPARSGSSFGVTKVT 185

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYS 201
             + +   +  + +  +  ++LIE  V G E+ C ++G+     + +V  +A+    F  
Sbjct: 186 GPEQLRSAV--AEARQYDSKVLIEAAVIGSEIGCAILGNGDDLIAGEVDRVALSHGFFRI 243

Query: 202 YE---LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
           ++    +  S NS  ++PA IP +    VQ  A   ++A+GCRG++R D         V 
Sbjct: 244 HQEDSPETGSENSNFIVPADIPTEARSLVQETAKAIYRALGCRGLARVDMFL-KEDGVVV 302

Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
             E+N  PG+T  S +P M A AG S  E++  MV  A   +
Sbjct: 303 LNEVNTLPGLTSYSRYPRMMAAAGLSLTEVIDRMVSLALTGK 344


>gi|56707350|ref|YP_169246.1| D-alanyl-alanine synthetase A [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110669820|ref|YP_666377.1| D-alanine--D-alanine ligase B [Francisella tularensis subsp.
           tularensis FSC198]
 gi|115315497|ref|YP_764220.1| D-alanine--D-alanine ligase [Francisella tularensis subsp.
           holarctica OSU18]
 gi|156503383|ref|YP_001429448.1| D-alanyl-alanine synthetase A [Francisella tularensis subsp.
           holarctica FTNF002-00]
 gi|290953356|ref|ZP_06557977.1| D-alanyl-alanine synthetase A [Francisella tularensis subsp.
           holarctica URFT1]
 gi|295313403|ref|ZP_06804010.1| D-alanyl-alanine synthetase A [Francisella tularensis subsp.
           holarctica URFT1]
 gi|81598013|sp|Q5NI96|DDL_FRATT RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|122324519|sp|Q0BK01|DDL_FRATO RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|123169653|sp|Q14JP9|DDL_FRAT1 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|190359132|sp|A7NET9|DDL_FRATF RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|56603842|emb|CAG44818.1| D-alanine--D-alanine ligase B [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110320153|emb|CAL08201.1| D-alanine--D-alanine ligase B [Francisella tularensis subsp.
           tularensis FSC198]
 gi|115130396|gb|ABI83583.1| D-alanine--D-alanine ligase [Francisella tularensis subsp.
           holarctica OSU18]
 gi|156253986|gb|ABU62492.1| D-alanine--D-alanine ligase [Francisella tularensis subsp.
           holarctica FTNF002-00]
 gi|282158482|gb|ADA77873.1| D-alanine--D-alanine ligase [Francisella tularensis subsp.
           tularensis NE061598]
          Length = 296

 Score =  293 bits (752), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 105/297 (35%), Positives = 162/297 (54%), Gaps = 8/297 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-DRSVGLVLAHLKPDLAFNVLH 59
           + VL GG S EREVSL SGKA   +L   G+    +D   + +   L  LKPD  F  LH
Sbjct: 6   IVVLYGGDSPEREVSLKSGKAVLDSLISQGYDAVGVDASGKELVAKLLELKPDKCFVALH 65

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G  GE+G V A+LE+LEI +T S + +S ++MDKM SK+++    +P   +  +    + 
Sbjct: 66  GEDGENGRVSALLEMLEIKHTSSSMKSSVITMDKMISKEILMHHRMPTPMAKFLT-DKLV 124

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
           ++  IS P  +KP  GGSS+    +K  Q +     ++S +    +++IEQ+V G E+T 
Sbjct: 125 AEDEISFPVAVKPSSGGSSIATFKVKSIQELKHAYEEASKY---GEVMIEQWVTGKEITV 181

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
            ++ D       I  P+++FY YE KYS   S +  P+ +      EV++LA  A+  +G
Sbjct: 182 AIVNDEVYSSVWIE-PQNEFYDYESKYS-GKSIYHSPSGLCEQKELEVRQLAKKAYDLLG 239

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           C G +R DF++D      + +EIN  PGMT  S+ P+ AA  G  F   +  ++E A
Sbjct: 240 CSGHARVDFIYDDRGN-FYIMEINSSPGMTDNSLSPKSAAAEGVDFDSFVKRIIEQA 295


>gi|167772359|ref|ZP_02444412.1| hypothetical protein ANACOL_03736 [Anaerotruncus colihominis DSM
           17241]
 gi|167665462|gb|EDS09592.1| hypothetical protein ANACOL_03736 [Anaerotruncus colihominis DSM
           17241]
          Length = 357

 Score =  293 bits (752), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 93/348 (26%), Positives = 147/348 (42%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           +AVL G ISSE EVSL S  +    +    + V  + + +                    
Sbjct: 6   VAVLFGSISSEYEVSLRSAASVLRNIPRDRYDVVMLGITKDGRWFEYAGSIDDIESDRWL 65

Query: 49  -----------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPY 79
                                        +  D  F VLHG   EDG +Q +LE+  + Y
Sbjct: 66  QNGPVTPAFISPDRGAGGILRLLPDGPQPVAVDAVFPVLHGEHSEDGAIQGLLEMAGLAY 125

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--------QHLISPPYVIK 131
              G+LASA  MDK  +  ++ + G+ + P  ++ R  +                P  IK
Sbjct: 126 VGCGVLASAACMDKAVTHTILEAAGIEMTPYTVLTRGALAHFDETERMLAAKHGYPMFIK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD---ASLD 188
           P   GSS+G+   K    +   L  S ++    +++ E  V G EL C V+G+   A   
Sbjct: 186 PANTGSSVGVGKAKDAGGLCAAL--SEAFRFDRKVIAETAVVGDELECAVLGNFDRAEAS 243

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                VP+ +FY Y  KY   ++   +PA+I  +  + +++ A  A  A+GC G+SR DF
Sbjct: 244 CVGEIVPRHEFYDYSGKYLDDSTDLYIPARISGEASERIRQTAVRAFAAMGCTGLSRVDF 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                 R V   EIN  PG T +S++P++    G  + EL+  ++E A
Sbjct: 304 FLTREGR-VVLNEINTLPGFTSISMYPKLFEAVGLPYPELISRLIELA 350


>gi|304389915|ref|ZP_07371872.1| D-alanine-D-alanine ligase [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
 gi|315657167|ref|ZP_07910051.1| D-alanine-D-alanine ligase [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
 gi|304326808|gb|EFL94049.1| D-alanine-D-alanine ligase [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
 gi|315492270|gb|EFU81877.1| D-alanine-D-alanine ligase [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
          Length = 375

 Score =  293 bits (752), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 85/362 (23%), Positives = 153/362 (42%), Gaps = 66/362 (18%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           +AV+ GG S E  +S ++       ++   F+   I + ++   VL              
Sbjct: 10  VAVIFGGRSGEHSISCATAAGVLDHIDRTRFEPVPIGITKAGAWVLMPDESDSLRLQDGQ 69

Query: 47  ---------------------------------AHLKPDLAFNVLHGNFGEDGLVQAILE 73
                                               + D+   +LHG +GEDG +Q + E
Sbjct: 70  GAEIEDNGTFVALVPQNQHLFFWDSRTPSSPIKDLGRIDVVMPLLHGPYGEDGTIQGLCE 129

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL--------IS 125
           ++ +PYT  G+ AS+  MDK  +K ++   G+PV    +++ F    +            
Sbjct: 130 MVGVPYTGCGVGASSNGMDKGCAKVLLEHGGIPVGRYHVISDFDWRHRADEVPTPILSWG 189

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGD 184
            P  +KP + GSSLG+  +   Q     ++  ++  H  ++++E  V G  E+ C V+  
Sbjct: 190 LPVFVKPARAGSSLGVTRVDSWQDFEAAVV--AARRHDPKVIVEAAVQGAREIECAVLEG 247

Query: 185 ASLDVTEIAVPKS-------DFYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQ 236
            +        P           Y ++ KY +  +  +  PA+IP  +  ++Q  A  A Q
Sbjct: 248 RAGGAPRTTPPGEVVMVSTPGMYDFQSKYFANEAVQLQIPAQIPAGVAAQIQSYARQAFQ 307

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            +G  G+SR DF + P + ++   E+N  PGMTP S++P M    G S+ +L+  ++E A
Sbjct: 308 ILGGEGLSRVDFFYVPDTGEIILNEVNTMPGMTPYSLYPGMWENVGLSYTDLVTELIELA 367

Query: 297 SC 298
             
Sbjct: 368 LA 369


>gi|56123448|gb|AAV74563.1| D-alanine:D-lactate ligase [Clostridium sp. MLG480]
          Length = 342

 Score =  293 bits (752), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 85/337 (25%), Positives = 147/337 (43%), Gaps = 44/337 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           +A++ GG S E +VS+ S    A+ ++   F    I + ++    L              
Sbjct: 6   VAIIFGGCSEEHDVSVKSAIEIAANIDTEKFDPHYIGITKNGVWKLCKKPCTEWEADSLP 65

Query: 47  --------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
                                  + D+AF VLHG  GEDG +Q +  L  IPY    I +
Sbjct: 66  AIFSPDRKTHGLLVMKESEYETRRIDVAFPVLHGKCGEDGAIQGLFVLSGIPYVGCDIQS 125

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           SA  MDK  +  +  + G+ V    ++ +        ++ P  +KP + GSS G+  +  
Sbjct: 126 SAACMDKSLAYILTKNAGIAVPEFQVIEKGGKPEARTLTYPVFVKPARSGSSFGVTKVNS 185

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSY 202
            + +   +   ++  +  ++LIEQ + G E+ C VMG+       +V +I +    F  +
Sbjct: 186 TEELNAAI--EAAGQYDGKILIEQAISGCEVGCAVMGNEDDLIVGEVDQIRLSHGIFRIH 243

Query: 203 ---ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
              E +  S N+  ++PA IP++    VQ  A   ++ +GCRG++R D         +  
Sbjct: 244 QENEPEKGSENAMIIVPADIPVEERNRVQETAKKVYRVLGCRGLARVDLFLQE-DGGIVL 302

Query: 260 LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            E+N  PG T  S +P M A AG +   L+  ++  A
Sbjct: 303 NEVNTLPGFTSYSRYPRMMAAAGITLPALIDSLITLA 339


>gi|254967070|gb|ACT97573.1| putative D-alanine-D-alanine ligase [uncultured organism]
          Length = 352

 Score =  293 bits (752), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 101/351 (28%), Positives = 160/351 (45%), Gaps = 55/351 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40
           + VL GG+S+ER+VSL+S       L + G     +DV                      
Sbjct: 3   IIVLAGGLSTERDVSLASAAGICRTLLERGHDAFLLDVFLGLENAPEDLEDVFTMPGHGL 62

Query: 41  SVGLVLAHLKPDLA----------------------------FNVLHGNFGEDGLVQAIL 72
            +   ++  +PDLA                            F  LHG  GE+G +QA  
Sbjct: 63  EIAKNISEEEPDLAAVKASRPDQSDCFLGPNVIELCRLADITFLGLHGGEGENGKLQATF 122

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD---SQHLISPPYV 129
           +LL I YT    L  A++MDK  +KQV    G+     + +++   D   +   +S P V
Sbjct: 123 DLLGIRYTGPDSLGCAVAMDKGFTKQVFLQAGIDTPDGVCLHKNDADRSLASLGLSLPVV 182

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           +KP  GGSS+G+ ++  +      L    S+ + D+++IE ++ G E  CG++   +L  
Sbjct: 183 VKPCSGGSSIGVYIVNTEDEYKDAL--EKSFRYEDEIVIETFIKGREFACGIIDGEALPP 240

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
            EI +PK+ F+ Y  KY    +  V PA IP DI + +  L   A  A+     SR+DFL
Sbjct: 241 IEI-IPKTGFFDYANKYQDGATDEVCPADIPKDIEERMMELTVRAFHALKLNVYSRADFL 299

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
            D     ++ LE+N  PGMT  S+ P+ A  AG  + +L   +++ +   R
Sbjct: 300 LDDQ-GSLYCLEMNTLPGMTAASLLPKEAKVAGIEYGDLCELIIQKSIEAR 349


>gi|317057058|ref|YP_004105525.1| D-alanine/D-alanine ligase [Ruminococcus albus 7]
 gi|315449327|gb|ADU22891.1| D-alanine/D-alanine ligase [Ruminococcus albus 7]
          Length = 361

 Score =  293 bits (752), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 87/350 (24%), Positives = 161/350 (46%), Gaps = 57/350 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALED--AGFKVSQIDVDRSVGLVL------------ 46
           +AV+ GG S+E +VS+ S      ++ +    ++V  I + +    V             
Sbjct: 6   VAVIFGGRSNEHDVSVVSAAHVIRSISENPDRYEVICIGITKKGHWVRFMGSAEDIANGS 65

Query: 47  ------------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLE 76
                                          ++K D  F VLHG  GEDG +Q I ++ E
Sbjct: 66  WAENPDNVACIFSPDPVHRGFIQLEDDGSYTNIKVDAVFPVLHGKNGEDGTIQGIFQMAE 125

Query: 77  IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL--------VNRFTMDSQHLISPPY 128
           IP+    +++SA  MDK  +  ++ + GV     I         ++      +  +  P 
Sbjct: 126 IPFVGCDLISSACCMDKDVTHTILEAHGVRTAKWISMIYRDISKLDEKCRLMEKELGYPM 185

Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD 188
            +KP   GSS+GI      + +   +    ++ H  ++++EQ ++GIEL C VMG+    
Sbjct: 186 YVKPANCGSSVGITKAHDFEELKAGIKL--AFTHDHKVVVEQGINGIELECAVMGNDEPF 243

Query: 189 VTEIAV--PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRS 246
            + +      ++FY Y+ KY++ +S   +PA++P ++ +E++  A  A +A+GC G++R 
Sbjct: 244 ASTVGEIAAANEFYDYDAKYNNSDSKTYIPARVPDEVIEEIRETAVRAFKAMGCEGLARC 303

Query: 247 DFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           DF       +V   EIN  PG T +S++P++  + G S+ E    +++ A
Sbjct: 304 DFFLSDK-GEVILNEINTLPGHTQISMYPKLMEHEGISYAEQEDRLIKLA 352


>gi|6448488|emb|CAB61227.1| vana protein [Bacillus circulans]
          Length = 343

 Score =  293 bits (752), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 86/335 (25%), Positives = 147/335 (43%), Gaps = 45/335 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +A+L GG S E +VS+ S    A+ ++   ++   I + +S    +              
Sbjct: 6   VAILFGGCSEEHDVSVKSAIEIAANIDKEKYETLYIGITKSGVWKMCEKPCVEWENDNCC 65

Query: 52  --------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
                                     D+AF+VLHG  GEDG +Q + EL  IP+    I 
Sbjct: 66  SAVLSPDKKMHGLLVKKNHEYEIDHVDVAFSVLHGKSGEDGSIQGLFELSGIPFVGCDIQ 125

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145
           +SA+ MDK  +  V  + G+      + N+         + P  +KP + GSS G+  + 
Sbjct: 126 SSAICMDKSLTYIVAENAGIATPEFWVFNKDDKPMADTFTYPVFVKPARSGSSFGVKKVN 185

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS----LDVTEIAVPKSDFYS 201
               +  D     +  +  ++LIEQ V G E+ C V+G++S     +V +I +    F  
Sbjct: 186 GADEL--DAAIELAGQYDSKILIEQAVLGCEVGCAVLGNSSAFVVGEVDQIRLQHGIFRI 243

Query: 202 Y---ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
           +   E +  S N+   +PA +  +    +Q  A   + A+GCRG++R D      + ++ 
Sbjct: 244 HQEAEPEKGSENAVITVPADLSAEERGRIQETAKKIYNALGCRGLARVDMFL-QDNGRIV 302

Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
             E+N  PG T  S +P M A  G +F EL+  ++
Sbjct: 303 LNEVNTLPGFTSYSRYPRMMAAVGIAFPELIDRLI 337


>gi|167765979|ref|ZP_02438032.1| hypothetical protein CLOSS21_00470 [Clostridium sp. SS2/1]
 gi|167712336|gb|EDS22915.1| hypothetical protein CLOSS21_00470 [Clostridium sp. SS2/1]
          Length = 361

 Score =  293 bits (752), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 94/350 (26%), Positives = 154/350 (44%), Gaps = 54/350 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           + V+ GG SSE +VS  S       ++   + V  + + +    +L              
Sbjct: 13  VVVIFGGDSSEHDVSCLSATTVIKNMDTEKYNVILVGITKEGKWLLVDGVKDIEDGSWRE 72

Query: 49  --------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
                                      K D+ F VLHG  GEDG VQ + EL +IPY   
Sbjct: 73  GEVKAFISPDTTTRSLVILAEGTYKLQKVDVIFPVLHGMNGEDGTVQGLFELSKIPYVGC 132

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--------SQHLISPPYVIKPLK 134
           G+LASA+SMDK+ +K +V   G+     + V     +         +  I  P  +KP  
Sbjct: 133 GVLASAVSMDKVYTKIIVDHIGIDQAKFVHVRESDFEHLEEAMDRVEKEIPYPIFVKPSC 192

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD----ASLDVT 190
            GSS G+   +  + +   L ++    H   +L E+ + G E+ C V+GD     S  V 
Sbjct: 193 AGSSKGVSKAENRKELEAALYEAV--KHDRNILCEETIVGREVECAVLGDRTQVKSTCVG 250

Query: 191 EI-AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
           EI A  ++ FY ++ KY++  S  V+  ++P +  ++++  A    +A+   G+SR DF 
Sbjct: 251 EILAAEEAAFYDFDAKYNNAESKTVVDPEMPEESKRKIKEDAEAIFRAVDGFGLSRVDFF 310

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
            +   R V + EIN  PG T +S++P +    G    ELL  +++ A   
Sbjct: 311 LEESGR-VVFNEINTLPGFTSISMYPMLWKACGLDIPELLDTLIDQAMTR 359


>gi|302522120|ref|ZP_07274462.1| D-alanylalanine synthetase [Streptomyces sp. SPB78]
 gi|302431015|gb|EFL02831.1| D-alanylalanine synthetase [Streptomyces sp. SPB78]
          Length = 389

 Score =  293 bits (752), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 102/363 (28%), Positives = 158/363 (43%), Gaps = 72/363 (19%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +AV+ GG SSE  VS+ +  A   A++   + V  I +       LA  +P         
Sbjct: 24  VAVVFGGRSSEHGVSVVTAGAVLGAIDREKYDVLPIGITGEGRWALAVDEPARMAIADRA 83

Query: 52  -----------------------------------------DLAFNVLHGNFGEDGLVQA 70
                                                    D+ F +LHG +GEDG +Q 
Sbjct: 84  MPTVESLAESLEGSVVLPFDPSVREVVYTEPGSVPKALGEVDVVFPMLHGPYGEDGTLQG 143

Query: 71  ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV------------NRFTM 118
           +LEL   PY  +G+LASA+  DK   K++ +S G+ V P +++             R   
Sbjct: 144 LLELSGTPYVGAGVLASAVGQDKEYMKRIFTSFGLAVGPYLVIRPREWEQDPDAARRRIA 203

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           D       P  +KP +GGSS+GI  +       LD   + +  H  + LIE  V G E+ 
Sbjct: 204 DFAGDHGWPLFVKPARGGSSVGISKVDGFD--GLDEAIAEARRHDPKFLIEALVQGREIE 261

Query: 179 CGVMG-----DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           CGV+       AS+      V    +Y +E KY   +++ ++PA +  +   EVQRLA  
Sbjct: 262 CGVLEFEDGPRASVPAEIPPVTDHAYYDFEAKY-IDSASGLVPAPLTPEETAEVQRLAVA 320

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           A +A  C G+ R+DF            EIN  PG TP+S++P+M   +G  + EL+  ++
Sbjct: 321 AFEATSCEGLVRADFFLT--DDGFVINEINTMPGFTPISMYPQMWEKSGVGYAELVDRLI 378

Query: 294 EDA 296
           + A
Sbjct: 379 QAA 381


>gi|221195258|ref|ZP_03568314.1| D-alanine--D-alanine ligase B [Atopobium rimae ATCC 49626]
 gi|221185161|gb|EEE17552.1| D-alanine--D-alanine ligase B [Atopobium rimae ATCC 49626]
          Length = 324

 Score =  293 bits (752), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 114/308 (37%), Positives = 167/308 (54%), Gaps = 16/308 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFK-VSQIDVD-RSVGLVLAHLKPDLAFNVL 58
           + VL GG S E E+SL SG+    AL+ AGF+ V  +D+        L     D+AF  +
Sbjct: 11  VIVLAGGWSDEHEISLQSGEEVKKALKQAGFEKVELLDIALPGAIEKLVKSSYDVAFVAM 70

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NR 115
           HG++GEDG +Q +LE+L IPYT SG+LASA+  +K  SK +    G+PV   I V    +
Sbjct: 71  HGHYGEDGCIQGLLEILHIPYTFSGVLASAMGTEKEVSKLMYKQAGIPVPKGIDVSAGTK 130

Query: 116 FTMDSQHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
           FT +        +  P  +KP   GSS G+  +     +   +  + +   GD++LIE+ 
Sbjct: 131 FTDEEIEQVVTDLGLPIFVKPAANGSSFGVTRVTNKDQLLQAIEDAGA--QGDRVLIEEC 188

Query: 172 VDGIELTCGVMGDA---SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           V G E+T  V+G+    +L + EI   + +FYS E+K    +  H+ PA++  D+Y   Q
Sbjct: 189 VVGTEITVPVIGNDHPTALPIVEIVF-EDEFYSIEVKAEPASLHHITPARLAPDVYARAQ 247

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
            LA  AH+A+GCRG+SRSDF+          LE N+ PGMT  S+ P+ A   G  F EL
Sbjct: 248 ELAICAHKALGCRGVSRSDFIV-KADGTPVILETNMIPGMTERSLIPDSARTDGIPFSEL 306

Query: 289 LLWMVEDA 296
               +E A
Sbjct: 307 CTRFIEYA 314


>gi|317497210|ref|ZP_07955534.1| D-alanine-D-alanine ligase [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316895455|gb|EFV17613.1| D-alanine-D-alanine ligase [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 361

 Score =  293 bits (752), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 94/350 (26%), Positives = 154/350 (44%), Gaps = 54/350 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           + V+ GG SSE +VS  S       ++   + V  + + +    +L              
Sbjct: 13  VVVIFGGDSSEHDVSCLSATTVIKNMDTEKYNVILVGITKEGRWLLVDGVKDIEDGSWRE 72

Query: 49  --------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
                                      K D+ F VLHG  GEDG VQ + EL +IPY   
Sbjct: 73  GEVKAFISPDTTTRSLVILAEGTYKLQKVDVIFPVLHGMNGEDGTVQGLFELSKIPYVGC 132

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--------SQHLISPPYVIKPLK 134
           G+LASA+SMDK+ +K +V   G+     + V     +         +  I  P  +KP  
Sbjct: 133 GVLASAVSMDKVYTKIIVDHIGIDQAKFVHVRESDFEHLEEAMDRVEKEIPYPIFVKPSC 192

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD----ASLDVT 190
            GSS G+   +  + +   L ++    H   +L E+ + G E+ C V+GD     S  V 
Sbjct: 193 AGSSKGVSKAENRKELEAALYEAV--KHDRNILCEETIVGREVECAVLGDRTQVKSTCVG 250

Query: 191 EI-AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
           EI A  ++ FY ++ KY++  S  V+  ++P +  ++++  A    +A+   G+SR DF 
Sbjct: 251 EILAAEEAAFYDFDAKYNNAESKTVVDPEMPEESKRKIKEDAEAIFRAVDGFGLSRVDFF 310

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
            +   R V + EIN  PG T +S++P +    G    ELL  +++ A   
Sbjct: 311 LEESGR-VVFNEINTLPGFTSISMYPMLWKACGLDIPELLDTLIDQAMTR 359


>gi|331090915|ref|ZP_08339758.1| hypothetical protein HMPREF9477_00401 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330405469|gb|EGG85002.1| hypothetical protein HMPREF9477_00401 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 338

 Score =  293 bits (752), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 85/335 (25%), Positives = 163/335 (48%), Gaps = 47/335 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------------------- 40
           +AV+ GG S+E EVSL S  A  + L+   +++  I + R                    
Sbjct: 4   IAVIFGGCSTEYEVSLQSAYAVLTHLDREKYEIISIGITREGKWFRYYGKEKYISEDTWQ 63

Query: 41  ----SVGLVLAH----------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYT 80
               +   +L                  +K D  F VLHG  GEDG +Q ++EL  +P  
Sbjct: 64  EKECNPAWILPDRVEQGILECTKEGNRLIKVDAVFPVLHGKNGEDGTIQGLIELAGLPVI 123

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLG 140
             G L+S+L MDK ++ ++V   G+ V  ++++ +   +    +  P  +KP++ GSS G
Sbjct: 124 GCGTLSSSLCMDKDKAHRLVEKEGIAVPKAVVLRKG--EKADTLVYPVFVKPVRAGSSFG 181

Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK--SD 198
           I  + +++ +   +    ++ H D+++IE+ ++G E+ C V+G+  L V  +   +    
Sbjct: 182 ITKVDREEDLEKAV--ELAFVHDDEVIIEENIEGFEVGCAVLGNDKLIVGRVDEIELSDG 239

Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
           F+ ++ KY+  NS   +PA+I  +I ++++  A   ++ + C+G +R D    P  +++ 
Sbjct: 240 FFDFKEKYTLQNSKIHMPARIDGEIEEKIKETAKKIYRTLSCKGFARVDMFLTP-DKRIV 298

Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           + E+N  PG T  S +P M       F ++L  ++
Sbjct: 299 FNEVNTIPGFTSHSRYPNMMKGIDMLFEDVLDNLI 333


>gi|271969210|ref|YP_003343406.1| D-alanine--D-alanine ligase [Streptosporangium roseum DSM 43021]
 gi|270512385|gb|ACZ90663.1| D-alanine--D-alanine ligase [Streptosporangium roseum DSM 43021]
          Length = 369

 Score =  293 bits (752), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 91/354 (25%), Positives = 162/354 (45%), Gaps = 61/354 (17%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           +A++ GG +SE  VS+    +   A++ + ++V  I + +    VLA             
Sbjct: 11  VAIVFGGRNSEHAVSILGAGSVLGAIDRSKYEVIPIGIAQDGRWVLASGDQRYAIEGDEL 70

Query: 50  --------------------------------KPDLAFNVLHGNFGEDGLVQAILELLEI 77
                                           + D+ F V+HG F EDG +Q +LE+  +
Sbjct: 71  PSVDVQGTGLALPSGGGSLVAYDAGSIPVELGQVDVVFPVMHGPFAEDGTIQGLLEMAGV 130

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--------MDSQHLISPPYV 129
            Y  SG+LASA+ MDK   K V+++ G+PV P +++            +     +  P  
Sbjct: 131 RYVGSGVLASAVGMDKAYMKMVLAASGLPVGPYVVIRDRDWRTDRDRVLKEVQELGWPVF 190

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           +KP + GSS GI      + +   +    +  H  ++L+E  + G E+ C V+     + 
Sbjct: 191 VKPARAGSSQGISKAHDLEELEAAV--GFAREHDPKVLVEAAIAGREIECAVLESLGDEA 248

Query: 190 TEIAVP-------KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
              +VP         +F+ +E KY   + +  +PA IP D+ + ++ +A  A +A+GC G
Sbjct: 249 ARASVPGEVLVRGDHEFFDFEAKYIGDDMSLSVPADIPADVAENLRAMAVRAFEALGCEG 308

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +SR DF +     ++   EIN  PG T +S+ P++ A  G S+ EL+  +++ A
Sbjct: 309 LSRVDFFYTA-DGRLILNEINTMPGFTAMSVAPQLWAATGLSYAELVERLIQLA 361


>gi|284028771|ref|YP_003378702.1| D-alanine/D-alanine ligase [Kribbella flavida DSM 17836]
 gi|283808064|gb|ADB29903.1| D-alanine/D-alanine ligase [Kribbella flavida DSM 17836]
          Length = 323

 Score =  293 bits (752), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 96/321 (29%), Positives = 150/321 (46%), Gaps = 25/321 (7%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK-------PDL 53
           +AV+ GG S E +VSL+SG+  A A  + G  V  + ++          +        D+
Sbjct: 3   VAVISGGASPEHDVSLASGQGIARAAAELGHTVLCLVIEPDGTWRDGQHEAIELLQFCDV 62

Query: 54  AFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
               LHG  GEDG++Q  L+ L +PY  SG+ ASA+ +DK  +K V+ + G+PV P I +
Sbjct: 63  VVPALHGQGGEDGVIQGFLQQLGVPYVGSGVAASAVGLDKHLTKAVLRAHGLPVAPGITL 122

Query: 114 NRFTMDS---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164
               +           +  I  P  +KP  GGSS G+  +     +   +  ++      
Sbjct: 123 RGADLADPESVLQRLKEASIDLPVFVKPGNGGSSFGVTRVTDSAELGRAVADAA--GLDS 180

Query: 165 QLLIEQYVDGIELTCGVMGD-----ASLDVTEIAV-PKSDFYSYELKYSSLNSTHVLPAK 218
           Q+L+EQ + G E+   VM        +    EI   P   F+    KY+   +  V+PA 
Sbjct: 181 QVLVEQEIRGREIDLAVMEFPDGRIEAGPALEIHSDPARPFFDTTAKYAGAGTRFVVPAP 240

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278
           +   +   ++R A    Q +GC G++R DF   P   +    E+N  PG TP S FP M 
Sbjct: 241 LDPALAASLRRTAVEVFQTLGCAGLARVDFFV-PADGQPVVNEVNTFPGFTPASQFPRMW 299

Query: 279 AYAGYSFRELLLWMVEDASCL 299
           A AG S+ EL+  ++E A   
Sbjct: 300 AAAGMSYPELVHNLLETARAR 320


>gi|159903895|ref|YP_001551239.1| D-alanine--D-alanine ligase [Prochlorococcus marinus str. MIT 9211]
 gi|159889071|gb|ABX09285.1| D-alanine--D-alanine ligase [Prochlorococcus marinus str. MIT 9211]
          Length = 353

 Score =  293 bits (751), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 105/346 (30%), Positives = 165/346 (47%), Gaps = 52/346 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDA----GFKVSQIDVDRSVGL--------VLAH 48
           + V+ GG+S E  VS+ S     +AL+       F+V  + +D             VL++
Sbjct: 8   VCVIFGGVSGEHNVSIQSAITVVNALKQGENANRFEVISLYIDSQGRWMNNNVAKEVLSN 67

Query: 49  LK-------------------------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
            +                          D+ F VLHG  GEDG +Q +L+L   P+  SG
Sbjct: 68  GRKPSTNETPENLSSQGFRYFPEDIEEIDVWFPVLHGPNGEDGTIQGLLKLTGKPFVGSG 127

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH-----------LISPPYVIKP 132
           +L SAL MDK+  K   +S  +P      +N+  + + H            +  P  IKP
Sbjct: 128 VLGSALGMDKIAMKIAFASANLPQVKYFSINKNELINPHAHSLFIKRIEAKLGYPCFIKP 187

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192
              GSS+GI      Q +   L  ++  NH  +++IE+ V G EL CGV+G   +  + +
Sbjct: 188 ANLGSSVGITKAYNKQQLIEGLNIAA--NHDPRIVIEESVTGRELECGVLGKEKMIASTV 245

Query: 193 AVPK--SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
              K  SD+Y Y+ KYS ++S  ++PA I  +I K++Q L+ LA +AI   GI+R DF +
Sbjct: 246 GEVKHQSDWYDYQAKYSGVSSEVLIPAPISEEISKKIQELSLLACKAISVEGIARVDFFY 305

Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              +  V   EIN  PG T  S++P +   +G +  +L+  +VE A
Sbjct: 306 KEDTNHVLINEINTLPGFTMQSMYPMLWNQSGLNIEKLVAILVETA 351


>gi|291558773|emb|CBL37573.1| D-alanine--D-alanine ligase [butyrate-producing bacterium SSC/2]
          Length = 353

 Score =  293 bits (751), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 94/350 (26%), Positives = 154/350 (44%), Gaps = 54/350 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           + V+ GG SSE +VS  S       ++   + V  + + +    +L              
Sbjct: 5   VVVIFGGDSSEHDVSCLSATTVIKNMDTEKYNVILVGITKEGKWLLVDGVKDIEDGSWRE 64

Query: 49  --------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
                                      K D+ F VLHG  GEDG VQ + EL +IPY   
Sbjct: 65  GEVKAFISPDTTTRSLVILAEGTYKLQKVDVIFPVLHGMNGEDGTVQGLFELSKIPYVGC 124

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--------SQHLISPPYVIKPLK 134
           G+LASA+SMDK+ +K +V   G+     + V     +         +  I  P  +KP  
Sbjct: 125 GVLASAVSMDKVYTKIIVDHIGIDQAKFVHVRESDFEHLEEAMDRVEKEIPYPIFVKPSC 184

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD----ASLDVT 190
            GSS G+   +  + +   L ++    H   +L E+ + G E+ C V+GD     S  V 
Sbjct: 185 AGSSKGVSKAENRKELEAALYEAV--KHDRNILCEETIVGREVECAVLGDRTQVKSTCVG 242

Query: 191 EI-AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
           EI A  ++ FY ++ KY++  S  V+  ++P +  ++++  A    +A+   G+SR DF 
Sbjct: 243 EILAAEEAAFYDFDAKYNNAESKTVVDPEMPEESKRKIKEDAEAIFRAVDGFGLSRVDFF 302

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
            +   R V + EIN  PG T +S++P +    G    ELL  +++ A   
Sbjct: 303 LEESGR-VVFNEINTLPGFTSISMYPMLWKACGLDIPELLDTLIDQAMTR 351


>gi|222151984|ref|YP_002561144.1| D-alanine-D-alanine ligase [Macrococcus caseolyticus JCSC5402]
 gi|254767732|sp|B9E8D0|DDL_MACCJ RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|222121113|dbj|BAH18448.1| D-alanine-D-alanine ligase [Macrococcus caseolyticus JCSC5402]
          Length = 356

 Score =  293 bits (751), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 87/339 (25%), Positives = 162/339 (47%), Gaps = 46/339 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           + ++ GG S+E +VSL + ++  +A++   + +  I +      +               
Sbjct: 6   ICIIYGGKSAEHDVSLLTAQSVINAMDKDKYAIDTIYITNDGEWLKGPEISETIEDSERL 65

Query: 46  -LAHLK----------------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
            L+H++                 D  F +LHG  GEDG +Q + E+L+IPY  +G+LA++
Sbjct: 66  RLSHIERLSISEMLNVSSAGKAYDAVFPLLHGPNGEDGTIQGLFEVLDIPYVGNGVLAAS 125

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSL 139
            SMDK+  KQ+ ++ G+P  P +   +   ++         +  ++ P  +KP   GSS+
Sbjct: 126 TSMDKLVMKQLFATRGLPQLPYVSFLKSEYEAHKDNIISLVEGKLTYPVFVKPANLGSSV 185

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKS 197
           GI      +++   + ++  ++   +L+IEQ V+  E+   V+G+ + + T     V   
Sbjct: 186 GISKCTDSETLIHGIEEALQFDR--KLVIEQGVNAREVEVAVLGNDTPETTLPGEVVKDV 243

Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
           DFY Y+ KY        +PA I  +I   ++ +A  A +A  C G+ R+DF       K+
Sbjct: 244 DFYDYKSKYKDGKVRLQIPADISEEIQSALRDMAVEAFKATDCSGLVRADFFLTE-DDKI 302

Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +  E N  PG T  S++P +    G S+ EL+  ++  A
Sbjct: 303 YINETNAMPGFTKFSMYPLLWENMGKSYSELITDLINLA 341


>gi|295836324|ref|ZP_06823257.1| D-alanine-D-alanine ligase [Streptomyces sp. SPB74]
 gi|197699329|gb|EDY46262.1| D-alanine-D-alanine ligase [Streptomyces sp. SPB74]
          Length = 389

 Score =  293 bits (751), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 101/363 (27%), Positives = 157/363 (43%), Gaps = 72/363 (19%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +AV+ GG SSE  VS+ +  A    ++   + V  I +       LA  +P         
Sbjct: 24  VAVVFGGRSSEHGVSVVTAGAVLGVIDREKYDVLPIGITGEGRWALAADEPARMAITDRS 83

Query: 52  -----------------------------------------DLAFNVLHGNFGEDGLVQA 70
                                                    D+ F +LHG +GEDG +Q 
Sbjct: 84  MPTVESLAESLEGSVVLPFDPSVREVVYTEPGSVPKALGEVDVVFPMLHGPYGEDGTLQG 143

Query: 71  ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV------------NRFTM 118
           +LEL   PY  +G+LASA+  DK   K++ +S G+ V P +++             R   
Sbjct: 144 LLELSGTPYVGAGVLASAVGQDKEYMKRIFTSFGLAVGPYLVIRPREWEQDPEAARRRIA 203

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           D       P  +KP +GGSS+GI  +   +   LD     +  H  + LIE  V G E+ 
Sbjct: 204 DFAGDHGWPLFVKPARGGSSVGISKVDGFE--GLDEAIEEARRHDPKFLIEALVQGREIE 261

Query: 179 CGVMG-----DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           CGV+       ASL      V    +Y +E KY   +++ ++PA +  +   EVQRLA  
Sbjct: 262 CGVLEFEDGPRASLPAEIPPVTDHAYYDFEAKY-IDSASGLVPAPLTPEETAEVQRLAVA 320

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           A +A  C G+ R+DF            E+N  PG TP+S++P+M   +G  + EL+  ++
Sbjct: 321 AFEATSCEGLVRADFFLT--DDGFVINEVNTMPGFTPISMYPQMWEKSGVGYAELVDRLI 378

Query: 294 EDA 296
           + A
Sbjct: 379 QAA 381


>gi|223932693|ref|ZP_03624692.1| D-alanine/D-alanine ligase [Streptococcus suis 89/1591]
 gi|330832452|ref|YP_004401277.1| D-alanine--D-alanine ligase [Streptococcus suis ST3]
 gi|223898663|gb|EEF65025.1| D-alanine/D-alanine ligase [Streptococcus suis 89/1591]
 gi|329306675|gb|AEB81091.1| D-alanine--D-alanine ligase [Streptococcus suis ST3]
          Length = 348

 Score =  293 bits (751), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 93/332 (28%), Positives = 156/332 (46%), Gaps = 41/332 (12%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV----------------- 45
           +L GG S+EREVS+ S ++   A+    F V    + ++   +                 
Sbjct: 8   LLYGGRSAEREVSVLSAESVMRAINYDKFFVKTYFISQTGDFIKTQEFSQTPSADEKLMT 67

Query: 46  ------LAHLKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
                    ++P        + F VLHG  GEDG +Q  LE+L +PY  + IL+S+++MD
Sbjct: 68  NATIVEEQKIRPSDIYEEKAVVFPVLHGPMGEDGSIQGFLEVLRMPYVGTNILSSSVAMD 127

Query: 93  KMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           K+ +K+V+ S G+   P + V           + +  ++ P  +KP   GSS+GI   + 
Sbjct: 128 KITTKRVLESAGISQVPYVAVIEGENIDDKIAEIEGKLTYPVFVKPANMGSSVGISKAED 187

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYEL 204
              +   L    ++ +  ++L+EQ V+  E+  G++G+A +  T     V    FY Y+ 
Sbjct: 188 LAGLHKALDL--AFKYDSRVLVEQGVNAREIEVGLLGNADVKTTLPGEVVKDVAFYDYDA 245

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           KY     T  +PAKI   I   ++  A  A +AIG  G+SR DF        +F  E+N 
Sbjct: 246 KYIDNKITMEIPAKIDEAIMDTMRDNAAKAFRAIGGCGLSRCDFFLTE-DGDIFLNELNT 304

Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            PG T  S++P +    G ++ +L+  +V  A
Sbjct: 305 MPGFTQWSMYPLLWDNMGLAYPDLIEELVRLA 336


>gi|228477325|ref|ZP_04061963.1| D-alanine--D-alanine ligase [Streptococcus salivarius SK126]
 gi|228251344|gb|EEK10515.1| D-alanine--D-alanine ligase [Streptococcus salivarius SK126]
          Length = 348

 Score =  293 bits (751), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 86/329 (26%), Positives = 157/329 (47%), Gaps = 41/329 (12%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL---------------- 46
           +L GG S+EREVS+ S ++   A++ + F+V    + +S   +                 
Sbjct: 8   LLYGGRSAEREVSVLSAESVMRAVDYSAFEVKTYFITQSGDFIKTQEFTETPGDDEKLMT 67

Query: 47  -------AHLKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
                    +KP        + F VLHG  GEDG +Q  LE L++PY  + +L+S+++MD
Sbjct: 68  NDTVVASQAIKPSDIYEEGAVVFPVLHGPMGEDGSIQGFLETLKLPYVGTNVLSSSVAMD 127

Query: 93  KMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           K+ +K ++   GVP     +            ++   ++ P  +KP   GSS+GI   + 
Sbjct: 128 KIMTKHILEVAGVPQVAYTVFIEGEDLEAAVAETLEKLTFPVFVKPANMGSSVGISKAEN 187

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYEL 204
           +  +   +  +    +  ++LIEQ V   E+  G++G+ ++  T+    V    FY Y+ 
Sbjct: 188 EAELRAAIDLAL--KYDSRILIEQGVVAREIEVGILGNTTVKTTDPGEVVKDVAFYDYQA 245

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           KY     T  +PA +P+++  +++  A  A +A+G  G++R DF        ++  E+N 
Sbjct: 246 KYIDNKITMDIPAHVPVEVMTQMRAYAAKAFRALGGCGLARCDFFLTE-DGAIYLNELNT 304

Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            PG T  S++P +    G S+  L+  +V
Sbjct: 305 MPGFTQWSMYPLLWENMGLSYSNLIKELV 333


>gi|332978578|gb|EGK15284.1| D-alanine-D-alanine ligase A [Psychrobacter sp. 1501(2011)]
          Length = 384

 Score =  293 bits (751), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 78/347 (22%), Positives = 159/347 (45%), Gaps = 53/347 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           +A+++GG S E  VS++SG +  + ++   F V  I +D                     
Sbjct: 14  VAIILGGQSPEHAVSINSGCSLLNHIDRNRFNVEAIYIDIEGRWWQYPHQESYTSDIFTI 73

Query: 46  -------------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYT 80
                                    L  +  D+ F+++HG+ GEDG +Q + E+  +PY 
Sbjct: 74  ETAQAIAQRCVIIPDETYQLVKLPSLEKIACDVCFSIVHGSTGEDGKLQGVFEVANLPYV 133

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--------DSQHLISPPYVIKP 132
            + +  SA+ M+K+  K ++++  +P     +V+  +         +    +  P  +KP
Sbjct: 134 GTDVAGSAVGMNKVIMKDILNANDIPTANYRIVDARSWKADAASLIEDARSLKLPIFVKP 193

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTE 191
              GSS+GI  +     +   +  +  +    Q+L+E+ +    EL   V+G+ + +V+ 
Sbjct: 194 ANTGSSVGISKVDSYDDLQSAIEVALKF--DPQVLVEEGITPARELEVAVLGNHNPEVSC 251

Query: 192 IAV--PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
           I    P   FY Y  KY +  +    PA +  ++  +++ +A   ++ +G +G+SR DFL
Sbjct: 252 IGEINPPDGFYDYASKYLNDTAKLSYPATVAPEVEAKMRDIAVKTYKVLGLKGLSRVDFL 311

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            D  + + + +E+N  PG T +S++P++   +G  +  L+  ++E A
Sbjct: 312 LDQATNEPYIIEVNTLPGFTNISMYPKLWDVSGKPYSTLITDLIELA 358


>gi|54113087|gb|AAV29177.1| NT02FT0155 [synthetic construct]
          Length = 296

 Score =  293 bits (751), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 105/297 (35%), Positives = 162/297 (54%), Gaps = 8/297 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-DRSVGLVLAHLKPDLAFNVLH 59
           + VL GG S EREVSL SGKA   +L   G+    +D   + +   L  LKPD  F  LH
Sbjct: 6   IVVLYGGDSPEREVSLKSGKAVLDSLISQGYDAVGVDASGKELVAKLLELKPDKCFVALH 65

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G  GE+G V A+LE+LEI +T S + +S ++MDKM SK+++    +P   +  +    + 
Sbjct: 66  GEDGENGRVSALLEMLEIKHTSSSMKSSVITMDKMISKEILMHHRMPTPMAKFLT-DKLV 124

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
           ++  IS P  +KP  GGSS+    +K  Q +     ++S +    +++IEQ+V G E+T 
Sbjct: 125 AEDEISFPVAVKPSSGGSSIATFKVKSIQELKHAYEEASKY---GEVMIEQWVTGKEITV 181

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
            ++ D       I  P+++FY YE KYS   S +  P+ +      EV++LA  A+  +G
Sbjct: 182 AIVNDEVYSSVWIE-PQNEFYDYESKYS-GKSIYHSPSGLCEQKELEVRQLAKKAYDLLG 239

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           C G +R DF++D      + +EIN  PGMT  S+ P+ AA  G  F   +  ++E A
Sbjct: 240 CSGHARVDFIYDDRGN-FYIMEINSSPGMTDNSLSPKSAAAEGVDFDSFVKRIIEQA 295


>gi|296120283|ref|YP_003628061.1| D-alanine/D-alanine ligase [Planctomyces limnophilus DSM 3776]
 gi|296012623|gb|ADG65862.1| D-alanine/D-alanine ligase [Planctomyces limnophilus DSM 3776]
          Length = 338

 Score =  293 bits (751), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 93/301 (30%), Positives = 143/301 (47%), Gaps = 9/301 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +A+L GG S ER +SL SG+A   AL++ G  +  ID        +     D  F  LHG
Sbjct: 18  IALLAGGDSDERSISLRSGQAVCQALQERGHFILPIDPAIVSLKGMDWNGFDAVFIALHG 77

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117
            FGEDG VQ +LE   IPYT S   AS L+ DK  +KQ      VP      ++      
Sbjct: 78  RFGEDGGVQTLLEESGIPYTGSSSQASRLAFDKRIAKQNFDRMQVPTPAWCELSPHESFD 137

Query: 118 --MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175
             +     +  P VIKP   GSSLG+ ++++ + +        + ++ + L++E  + G 
Sbjct: 138 SLLMKAKELGWPVVIKPASQGSSLGVSIVRQPEQLQSAY--ERARHYDEALIMEAAIVGS 195

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
           E T G+  D  L    I     +F+ +  KY   ++ ++    +P    ++++     A 
Sbjct: 196 EWTVGLHDDEILPPICIET-DREFFDWVAKYEDDHTRYIFDKPLPATCRQKLETACRGAV 254

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
            A+G  GISR D + D      + LEIN  PG+T  S+ P+ A  AG+S  EL    +  
Sbjct: 255 HALGVTGISRVDLMLDSEGN-PWVLEINTIPGLTDHSLVPKAAQQAGWSLGELCEESIHR 313

Query: 296 A 296
           A
Sbjct: 314 A 314


>gi|295426234|ref|ZP_06818895.1| D-alanine-D-alanine ligase A [Lactobacillus amylolyticus DSM 11664]
 gi|295064079|gb|EFG55026.1| D-alanine-D-alanine ligase A [Lactobacillus amylolyticus DSM 11664]
          Length = 360

 Score =  293 bits (751), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 92/345 (26%), Positives = 156/345 (45%), Gaps = 49/345 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           + ++ GG SSE EVS+ SG    +A++   F V  I +                      
Sbjct: 7   VGLIFGGNSSEYEVSIVSGHNIYNAIDKDKFDVHPIWITNDGYFADEKESFKVLKDPKYQ 66

Query: 52  ----------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
                                 D+ F ++HGN GEDG +Q +  +L+ P+    ILA+A+
Sbjct: 67  VKNPHKVTNISNLIELANLPEIDIFFPIVHGNLGEDGSLQGLFRILDKPFVGDDILAAAV 126

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-----------QHLISPPYVIKPLKGGSS 138
           +MDK  +K +    GVPV   I V R   D               +     +KP   GSS
Sbjct: 127 TMDKEFTKILAQRVGVPVADWIAVKRRDYDDKNSDKLNYDKVAEKLGKDMFVKPSNQGSS 186

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVP 195
           +G+  +         L +  ++ + D++L+E+ V G E+   V+G+ +  V+   +I   
Sbjct: 187 VGVSHVTNADEYKKALDE--AFKYDDKVLVEETVPGTEVETAVLGNDNPIVSGVGQIINA 244

Query: 196 KSDFYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
              +YSYE KY   +++ +  PA++P  I ++V+  A   +QA  C G++R D +  P  
Sbjct: 245 AGSWYSYENKYDDNSTSKLQIPAELPNRIVEKVRSNALKVYQATECSGMARIDSMLTP-D 303

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
            KV   E+N  PG T +S++P++   AG  + EL+  ++E     
Sbjct: 304 GKVVLTEVNALPGFTNISMYPKLFEAAGIPYTELITRLIEAGQAR 348


>gi|291547309|emb|CBL20417.1| D-alanine--D-alanine ligase [Ruminococcus sp. SR1/5]
          Length = 371

 Score =  293 bits (751), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 90/339 (26%), Positives = 157/339 (46%), Gaps = 50/339 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------------------- 38
           + VL GG S+ERE+S+ +G     AL   G     +D+                      
Sbjct: 28  IVVLAGGTSTEREISIVTGTGVCKALRKKGHNAILVDIFCGLEPVDWDEPFGDKDYEVDS 87

Query: 39  --------DRSVGLVLAHLK-------------PDLAFNVLHGNFGEDGLVQAILELLEI 77
                   D  +  +    +              D+ F  LHG+ GEDG VQA  +LL I
Sbjct: 88  AAEYMRSFDDDIEEIKRTRRSFFGPNVLELCQAADIVFMGLHGSNGEDGKVQATFDLLGI 147

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT---MDSQHLISPPYVIKPLK 134
            YT +G L+SAL+MDK  +K++     VP    + + +           +  P V+K   
Sbjct: 148 RYTGTGYLSSALAMDKGLTKKIFLMDQVPTPKGVSMLKENCTRNIHDLGMEFPVVVKTCC 207

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194
           GGSS+G+ ++   +     +    ++++ D++++E+Y+ G E +  V+   +  + EIA 
Sbjct: 208 GGSSVGVYIVNNQKEYEDAI--DGAYSYEDEVVVEEYIRGREFSVAVVDGKAYPIIEIA- 264

Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
           PK  FY Y+ KY + ++    PA+I  ++ +++Q  A    +A+   G +R DF+    +
Sbjct: 265 PKQGFYDYKNKYQAGSTVETCPAEISPELTEKMQHYAEAGAKALCIEGYARFDFMM-KEN 323

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
             ++ LE N  PGMTP S+ P+ A   G  + +L   ++
Sbjct: 324 GDMYCLEANTLPGMTPTSLIPQEAKVLGIDYPDLCEELI 362


>gi|167757614|ref|ZP_02429741.1| hypothetical protein CLORAM_03164 [Clostridium ramosum DSM 1402]
 gi|237735168|ref|ZP_04565649.1| D-alanine-D-alanine ligase B [Mollicutes bacterium D7]
 gi|167702611|gb|EDS17190.1| hypothetical protein CLORAM_03164 [Clostridium ramosum DSM 1402]
 gi|229381944|gb|EEO32035.1| D-alanine-D-alanine ligase B [Coprobacillus sp. D7]
          Length = 346

 Score =  293 bits (751), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 88/336 (26%), Positives = 162/336 (48%), Gaps = 47/336 (13%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP--- 51
           VL GG SSE  VS  S  +  + L+   ++++ + +D   G          LA       
Sbjct: 7   VLCGGQSSEHIVSRMSCTSVLNNLDANKYEITLVGIDLDGGWHYLDAKQTDLAKNTWLDN 66

Query: 52  --------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSK 97
                         D+AF VLHG +GEDG +Q + EL ++PY    ++ S+++MDK+ +K
Sbjct: 67  SSMVEDVYGLLKNQDVAFPVLHGMYGEDGTIQGLFELAKLPYVGCRVMGSSVAMDKIYTK 126

Query: 98  QVVSSCGVPVCPSILVNRFTMDSQ------------------HLISPPYVIKPLKGGSSL 139
           +++ + GVP   S+ V +   +                      +  P  IK  + GSS+
Sbjct: 127 KILDTVGVPQVKSVYVKKRYDEKLVVVTNTFDEIEEIEDYIVRELGMPCFIKASRSGSSV 186

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA--VPKS 197
           G         +   L +++ ++    +++E+ +D IEL   V+G+  + V+ +   +P  
Sbjct: 187 GCYRCDNQTELIGKLSEAAKYDRH--VVVEECIDCIELETAVLGNDDVIVSRVGQIMPHG 244

Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
           +FY++E KY    S   +PA +   I +++++ A    +A+   G+SR DF  D  + K+
Sbjct: 245 EFYTFESKYEDEESKTCIPALVDEQIQEQIRQYAIKVFKAVDGHGLSRVDFFLDKKTNKI 304

Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +  EIN  PG T +S++P++    G ++ ELL  ++
Sbjct: 305 YLNEINTMPGFTKISMYPQLMNDFGITYPELLDRLI 340


>gi|306991644|pdb|3K3P|A Chain A, Crystal Structure Of The Apo Form Of D-Alanine:d-Alanine
           Ligase (Ddl) From Streptococcus Mutans
 gi|306991645|pdb|3K3P|B Chain B, Crystal Structure Of The Apo Form Of D-Alanine:d-Alanine
           Ligase (Ddl) From Streptococcus Mutans
          Length = 383

 Score =  293 bits (750), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 92/336 (27%), Positives = 155/336 (46%), Gaps = 44/336 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD-------- 52
           + +L GG S+ER+VS+ S ++   A+    F V    + ++ G  +   + D        
Sbjct: 40  LVLLYGGRSAERDVSVLSAESVMRAINYDNFLVKTYFITQA-GDFIKTQEFDSQPSETDK 98

Query: 53  -----------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
                                  + F VLHG  GEDG +Q  LE+L++PY  + IL+S++
Sbjct: 99  LMTNDTIIASQKIKPSDIYEEEAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGTNILSSSV 158

Query: 90  SMDKMRSKQVVSSCG-VPVCPSILVNRFT------MDSQHLISPPYVIKPLKGGSSLGII 142
           +MDK+ + QV+ S   +P    + +           + +  +  P  +KP   GSS+GI 
Sbjct: 159 AMDKITTNQVLESATTIPQVAYVALIEGEPLESKLAEVEEKLIYPVFVKPANMGSSVGIS 218

Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA--VPKSDFY 200
             +    +   +  +    +  ++LIEQ VD  E+  G++G+  +  T     V    FY
Sbjct: 219 KAENRTDLKQAIALAL--KYDSRVLIEQGVDAREIEVGILGNTDVKTTLPGEIVKDVAFY 276

Query: 201 SYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260
            YE KY     T  +PA+I   I ++++  A  A + +GC G+SR DF       KV+  
Sbjct: 277 DYEAKYIDNKITMAIPAEIDPVIVEKMRDYAATAFRTLGCCGLSRCDFFLTE-DGKVYLN 335

Query: 261 EINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           E+N  PG T  S++P +    G S+  L+  +V  A
Sbjct: 336 ELNTMPGFTQWSMYPLLWENMGLSYSVLIEELVSLA 371


>gi|290892953|ref|ZP_06555943.1| D-alanine-D-alanine ligase [Listeria monocytogenes FSL J2-071]
 gi|290557529|gb|EFD91053.1| D-alanine-D-alanine ligase [Listeria monocytogenes FSL J2-071]
          Length = 370

 Score =  293 bits (750), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 87/351 (24%), Positives = 159/351 (45%), Gaps = 60/351 (17%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---LAHLKPD------- 52
           +L GG S+E EVSL +  +  +AL+   F+ + I +      +   L   K D       
Sbjct: 7   LLYGGKSAEHEVSLQTAFSVINALDLEKFEAAPIYITNEGEWIQGPLLSGKLDFVEQLRF 66

Query: 53  ---------------------------------LAFNVLHGNFGEDGLVQAILELLEIPY 79
                                            + F +LHG  GEDG VQ + E+L IPY
Sbjct: 67  SATDTIKLATTESEKSEGEAISPAVLEADGQETVVFPLLHGPNGEDGTVQGLFEVLNIPY 126

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVI 130
             +G+LAS+ +MDK+  K++ +  G+P  P++ V              + + +++ P  +
Sbjct: 127 VGNGVLASSAAMDKIVMKKIFADAGIPQVPAVAVRLIDWKNYQAEMITEMEEVLTYPVFV 186

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--D 188
           KP   GSS+GI      + +      + ++ +  ++++EQ V   E+  GV+G+ +    
Sbjct: 187 KPANLGSSVGISKATNKKEL--ADAMTEAFLYDRRVVVEQGVVAREIEMGVLGNDTPVCS 244

Query: 189 VTEIAVPKS---DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
           V    +P+     FY Y+ KY   N+  ++P ++  +I ++++  A  A   +   G+ R
Sbjct: 245 VPGEILPEGAVATFYDYKAKYQDNNTALIIPTEVAPEILEQMKEYAVQAFLGLDASGLVR 304

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +DF       ++F  E+N  PG TP S++P +    G  +  L+  +V+ A
Sbjct: 305 ADFFLTE-DNQLFLNEVNTMPGFTPYSMYPLLWQETGLPYGALIERLVDLA 354


>gi|62259612|gb|AAX77863.1| unknown protein [synthetic construct]
          Length = 331

 Score =  293 bits (750), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 105/297 (35%), Positives = 162/297 (54%), Gaps = 8/297 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-DRSVGLVLAHLKPDLAFNVLH 59
           + VL GG S EREVSL SGKA   +L   G+    +D   + +   L  LKPD  F  LH
Sbjct: 32  IVVLYGGDSPEREVSLKSGKAVLDSLISQGYDAVGVDASGKELVAKLLELKPDKCFVALH 91

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G  GE+G V A+LE+LEI +T S + +S ++MDKM SK+++    +P   +  +    + 
Sbjct: 92  GEDGENGRVSALLEMLEIKHTSSSMKSSVITMDKMISKEILMHHRMPTPMAKFLT-DKLV 150

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
           ++  IS P  +KP  GGSS+    +K  Q +     ++S +    +++IEQ+V G E+T 
Sbjct: 151 AEDEISFPVAVKPSSGGSSIATFKVKSIQELKHAYEEASKY---GEVMIEQWVTGKEITV 207

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
            ++ D       I  P+++FY YE KYS   S +  P+ +      EV++LA  A+  +G
Sbjct: 208 AIVNDEVYSSVWIE-PQNEFYDYESKYS-GKSIYHSPSGLCEQKELEVRQLAKKAYDLLG 265

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           C G +R DF++D      + +EIN  PGMT  S+ P+ AA  G  F   +  ++E A
Sbjct: 266 CSGHARVDFIYDDRGN-FYIMEINSSPGMTDNSLSPKSAAAEGVDFDSFVKRIIEQA 321


>gi|315037378|ref|YP_004030946.1| D-alanyl-alanine synthetase A [Lactobacillus amylovorus GRL 1112]
 gi|325955848|ref|YP_004286458.1| D-alanyl-alanine synthetase A [Lactobacillus acidophilus 30SC]
 gi|312275511|gb|ADQ58151.1| D-alanyl-alanine synthetase A [Lactobacillus amylovorus GRL 1112]
 gi|325332413|gb|ADZ06321.1| D-alanyl-alanine synthetase A [Lactobacillus acidophilus 30SC]
 gi|327182683|gb|AEA31130.1| D-alanyl-alanine synthetase A [Lactobacillus amylovorus GRL 1118]
          Length = 360

 Score =  293 bits (750), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 90/340 (26%), Positives = 152/340 (44%), Gaps = 49/340 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           + ++ GG SSE EVS+ SG     A++   F V  I +                      
Sbjct: 7   VGLIFGGNSSEYEVSIVSGHNIYKAIDKDKFDVHPIWITNEGYFANEEESFKVLEDPSYQ 66

Query: 52  ----------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
                                 D+ F ++HGN GEDG++Q +  L+  P+    +LA+A+
Sbjct: 67  VKNPHKVHNISNLIELENLPEIDVFFPIVHGNLGEDGVLQGLFRLMNKPFVGDDVLAAAV 126

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-----------QHLISPPYVIKPLKGGSS 138
           +MDK  +K +    GVPV   I + RF  D               +     +KP   GSS
Sbjct: 127 TMDKEFTKILAQKVGVPVADWISIKRFEYDDKNNDKLDYEKVAEKLGRDMFVKPSNQGSS 186

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL---DVTEIAVP 195
           +G+  +         L    ++ + D++L+E+ V G E+   V+G+       V +I   
Sbjct: 187 VGVNHVTNADEYAAAL--EEAFKYDDKVLVEETVPGTEVETAVLGNDKPIVAGVGQITNA 244

Query: 196 KSDFYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
           K  FY+YE KY   +++ +  PA +P +I   V++ A   ++   C G++R D +  P  
Sbjct: 245 KGSFYTYENKYDDNSTSKLQIPADLPDEIIDTVRKNARKVYEVTECSGMARIDSMLTP-G 303

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            KV   E+N  PG T +S++P++   AG  + EL+  ++E
Sbjct: 304 GKVVLTEVNALPGFTNISMYPKLFEEAGIPYTELITRLIE 343


>gi|288904861|ref|YP_003430083.1| D-alanyl-D-alanine ligase [Streptococcus gallolyticus UCN34]
 gi|288731587|emb|CBI13142.1| D-alanyl-D-alanine ligase [Streptococcus gallolyticus UCN34]
          Length = 348

 Score =  293 bits (750), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 95/334 (28%), Positives = 159/334 (47%), Gaps = 41/334 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           + +L GG S+EREVS+ S ++   A+    F V    + +S   +               
Sbjct: 6   LVLLYGGRSAEREVSVLSAESVMRAINYDKFFVKTYFITQSGDFIKTQEFSSKPADDEKL 65

Query: 47  ---------AHLKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
                      +KP        + F VLHG  GEDG +Q  LE+L++PY  + IL+S+++
Sbjct: 66  MTNATVVESQKIKPSDIYEEGAVVFPVLHGPMGEDGSIQGFLEILKMPYVGTNILSSSVA 125

Query: 91  MDKMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
           MDK+ +K V+ S GVP+   +       + +   +    ++ P  +KP   GSS+GI   
Sbjct: 126 MDKISTKHVLESAGVPLVAYVTYVEGADLEKAVTEVNEKLTYPVFVKPANMGSSVGISKA 185

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202
             ++ +   +  +    +  ++LIE  V+  E+  G++G+A +  T     V    FY Y
Sbjct: 186 DDEEGLRSAIDLAL--KYDSRILIETGVNAREIEVGILGNADVQTTLPGEVVKDVAFYDY 243

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
           + KY     T  +PA I   I +E++  A  A +AIG  G+SR DF        V+  E+
Sbjct: 244 DAKYIDNKITMDIPAHIDSSIMEEMRGYATTAFRAIGGCGLSRCDFFLTE-DGHVYLNEL 302

Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           N  PG T  S++P +    G ++ +L+  +VE A
Sbjct: 303 NTMPGFTQWSMYPLLWENMGLAYSDLIEKLVELA 336


>gi|116628273|ref|YP_820892.1| D-alanyl-alanine synthetase A [Streptococcus thermophilus LMD-9]
 gi|122267132|sp|Q03JC6|DDL_STRTD RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|116101550|gb|ABJ66696.1| D-alanine--D-alanine ligase [Streptococcus thermophilus LMD-9]
 gi|312278896|gb|ADQ63553.1| D-alanine-D-alanine ligase-like ATP-grasp enzyme [Streptococcus
           thermophilus ND03]
          Length = 348

 Score =  293 bits (750), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 84/329 (25%), Positives = 158/329 (48%), Gaps = 41/329 (12%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD---------- 52
           +L GG S+EREVS+ S ++   A++   F+V    + +S   +      +          
Sbjct: 8   LLYGGRSAEREVSVLSAESVMRAVDYNAFEVKTYFITQSGDFIKTQEFIETPGDDEKLMT 67

Query: 53  --------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
                               + F VLHG  GEDG +Q  LE L++PY  + +L+S+++MD
Sbjct: 68  NDTVEASQAIKPSDIYEEDAVVFPVLHGPMGEDGSIQGFLETLKLPYVGTNVLSSSVAMD 127

Query: 93  KMRSKQVVSSCGVPVCPSI-LVNRFTMDSQ-----HLISPPYVIKPLKGGSSLGIIVIKK 146
           K+ +K+++   GVP       +    +++        ++ P  +KP   GSS+GI   + 
Sbjct: 128 KIMTKRILEVAGVPQVAYTGYIEGEDLEAAVAETLEKLTFPVFVKPANMGSSVGISKAEN 187

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYEL 204
           +  +   +  +    +  ++LIEQ V   E+  G++G+ ++  T+    V    FY Y+ 
Sbjct: 188 ESELRSAIDLAL--KYDSRILIEQGVVAREIEVGILGNTTVKTTDPGEVVKDVAFYDYQA 245

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           KY     T  +PA++P+++  +++  A  A +A+G  G++R DF        ++  E+N 
Sbjct: 246 KYIDNKITMDIPARVPVEVMTQMRAYAAKAFRALGGCGLARCDFFLTE-DGAIYLNELNT 304

Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            PG T  S++P +    G S+ +L+  +V
Sbjct: 305 MPGFTQWSMYPLLWENMGLSYSDLIKELV 333


>gi|220906629|ref|YP_002481940.1| D-alanyl-alanine synthetase A [Cyanothece sp. PCC 7425]
 gi|219863240|gb|ACL43579.1| D-alanine/D-alanine ligase [Cyanothece sp. PCC 7425]
          Length = 349

 Score =  293 bits (750), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 92/350 (26%), Positives = 158/350 (45%), Gaps = 62/350 (17%)

Query: 1   MAVLMGGISSEREVS----------LSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK 50
           + +L GG S E EVS          L++            + V    + ++       + 
Sbjct: 5   VGLLFGGCSGEHEVSIASARAIARALTTAPN------SDRYTVLPFYIQKNGFWQGEEIA 58

Query: 51  ------------------------------PDLAFNVLHGNFGEDGLVQAILELLEIPYT 80
                                          D+ F +LHG  GEDG VQ +L+L++ P+ 
Sbjct: 59  QQVLESGVPLADPVEGQPTQLWSFPHAAETVDVWFPILHGPNGEDGTVQGLLKLMQRPWV 118

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------------ISPPY 128
            SG+LASA  MDK+  K + ++ G+P    + VNR  + S               +  P 
Sbjct: 119 GSGVLASAAGMDKIMMKTIFAAAGLPQVKYLAVNRSQLWSDPCVYTKLCDRIDTTLGYPC 178

Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL- 187
            +KP   GSS+GI  ++    +   L  ++S++   +L++E  V   E+ C V+G+    
Sbjct: 179 FVKPANLGSSVGITKVRNRPQLETALENAASYDR--RLVVETGVIAREVECSVLGNDHPR 236

Query: 188 -DVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRS 246
             V       SDFY YE KY+   ++ ++PA +P  I  ++Q +A  A  AI   G++R 
Sbjct: 237 ASVVGEITYSSDFYDYETKYTDGRASLIIPADLPPAIVTQIQEMALTAFTAIDAAGLARV 296

Query: 247 DFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           DF +   + ++   EIN  PG T  S++P++ A +G +F +L+  +++ A
Sbjct: 297 DFFYLESTGEILINEINTLPGFTAFSMYPQLWAASGVTFPDLVDQLIQFA 346


>gi|134302707|ref|YP_001122675.1| D-alanine--D-alanine ligase [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|190359134|sp|A4J053|DDL_FRATW RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|134050484|gb|ABO47555.1| D-alanine--D-alanine ligase [Francisella tularensis subsp.
           tularensis WY96-3418]
          Length = 296

 Score =  293 bits (750), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 105/297 (35%), Positives = 162/297 (54%), Gaps = 8/297 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-DRSVGLVLAHLKPDLAFNVLH 59
           + VL GG S EREVSL SGKA   +L   G+    +D   + +   L  LKPD  F  LH
Sbjct: 6   IVVLYGGDSPEREVSLKSGKAVLDSLISQGYDAVGVDASGKELVAKLLELKPDKCFVALH 65

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G  GE+G V A+LE+LEI +T S + +S ++MDKM SK+++    +P   +  +    + 
Sbjct: 66  GEDGENGRVSALLEMLEIKHTSSSMKSSVITMDKMISKEILMHYRMPTPMAKFLT-DKLV 124

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
           ++  IS P  +KP  GGSS+    +K  Q +     ++S +    +++IEQ+V G E+T 
Sbjct: 125 AEDEISFPVAVKPSSGGSSIATFKVKSIQELKHAYEEASKY---GEVMIEQWVTGKEITV 181

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
            ++ D       I  P+++FY YE KYS   S +  P+ +      EV++LA  A+  +G
Sbjct: 182 AIVNDEVYSSVWIE-PQNEFYDYESKYS-GKSIYHSPSGLCEQKELEVRQLAKKAYDLLG 239

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           C G +R DF++D      + +EIN  PGMT  S+ P+ AA  G  F   +  ++E A
Sbjct: 240 CSGHARVDFIYDDRGN-FYIMEINSSPGMTDNSLSPKSAAAEGVDFDSFVKRIIEQA 295


>gi|109240377|dbj|BAE96112.1| D-Ala:D-Ala ligase [Enterococcus raffinosus]
          Length = 359

 Score =  293 bits (750), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 86/342 (25%), Positives = 154/342 (45%), Gaps = 51/342 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLA------------- 47
           + +L GG S E +V++ S  +  SA+    ++V  I +D++   V               
Sbjct: 8   IILLYGGKSPEHDVAILSAFSVISAVYFDYYQVQLIYIDKTGQWVKGPLLTEAPETDETL 67

Query: 48  ----------------------HLKPD--LAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                  +K D  + F VLHG  GEDG +Q  LE L++PY  +G
Sbjct: 68  RLTWDPTGHEVEGFSGKVIAPGDIKEDNAIVFPVLHGPNGEDGTIQGFLETLDMPYVGAG 127

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLK 134
           ++ SA +MDK+ +K ++ + G+P  P + V +              +  +  P  IKP  
Sbjct: 128 VMTSACAMDKIMTKYILQAAGIPQVPYVPVLKNQWKENPKQIFDKCEGTLLYPMFIKPAN 187

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA- 193
            GSS+GI   +  + +   L +  ++ +  + L+EQ +D  E+   V+G+  +  T    
Sbjct: 188 MGSSVGITRAENREELQNALQE--AYRYDSRALVEQGIDAREIEVAVLGNDDVRTTLPGE 245

Query: 194 -VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            V +  FY Y  KY        +PA IP ++ ++ +  A  A+  +G  G+SR DF    
Sbjct: 246 IVKEEAFYDYNAKYIDNTIQMAIPADIPEEVMQKARDYAKSAYTMLGGSGLSRIDFFLTN 305

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
              ++F  E+N  P  T  S++P +    G  + +L+  +++
Sbjct: 306 K-NELFLNELNTMPDFTEFSMYPLLWENMGLKYGDLIEELIQ 346


>gi|224500417|ref|ZP_03668766.1| D-alanyl-alanine synthetase A [Listeria monocytogenes Finland 1988]
          Length = 365

 Score =  293 bits (750), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 87/351 (24%), Positives = 159/351 (45%), Gaps = 60/351 (17%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---LAHLKPD------- 52
           +L GG S+E EVSL +  +  +AL+   F+ + I +      +   L   K D       
Sbjct: 7   LLYGGKSAEHEVSLQTAFSVINALDLEKFEAAPIYITNEGEWIQGPLLSGKLDFVEQLRF 66

Query: 53  ---------------------------------LAFNVLHGNFGEDGLVQAILELLEIPY 79
                                            + F +LHG  GEDG VQ + E+L IPY
Sbjct: 67  SATDTIKLATTESEKSEGEAISPAVLEADGQETVVFPLLHGPNGEDGTVQGLFEVLNIPY 126

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVI 130
             +G+LAS+ +MDK+  K++ +  G+P  P++ V              + + +++ P  +
Sbjct: 127 VGNGVLASSAAMDKIVMKKIFADAGIPQVPAVAVRLIDWKNYQEEMVAEMEEVLTYPVFV 186

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--D 188
           KP   GSS+GI      + +      + ++ +  ++++EQ V   E+  GV+G+ +    
Sbjct: 187 KPANLGSSVGISKATNKKEL--ADAMTEAFLYDRRVVVEQGVVAREIEMGVLGNDTPVCS 244

Query: 189 VTEIAVPKS---DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
           V    +P+     FY Y+ KY   N+  ++P ++  +I ++++  A  A   +   G+ R
Sbjct: 245 VPGEILPEGAVATFYDYKAKYQDNNTALIIPTEVDPEILEQMKEYAVQAFLGLDASGLVR 304

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +DF       ++F  E+N  PG TP S++P +    G  +  L+  +V+ A
Sbjct: 305 ADFFLTE-DNQLFLNEVNTMPGFTPYSMYPLLWQETGLPYGALIERLVDLA 354


>gi|298346320|ref|YP_003719007.1| D-alanine--D-alanine ligase [Mobiluncus curtisii ATCC 43063]
 gi|315654911|ref|ZP_07907816.1| D-alanine-D-alanine ligase [Mobiluncus curtisii ATCC 51333]
 gi|298236381|gb|ADI67513.1| D-alanine--D-alanine ligase [Mobiluncus curtisii ATCC 43063]
 gi|315490872|gb|EFU80492.1| D-alanine-D-alanine ligase [Mobiluncus curtisii ATCC 51333]
          Length = 375

 Score =  293 bits (750), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 85/362 (23%), Positives = 153/362 (42%), Gaps = 66/362 (18%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           +AV+ GG S E  +S ++       ++   F+   I + ++   VL              
Sbjct: 10  VAVIFGGRSGEHSISCATAAGVLDHIDRTRFEPVPIGITKAGAWVLMPDESDSLRLQDGQ 69

Query: 47  ---------------------------------AHLKPDLAFNVLHGNFGEDGLVQAILE 73
                                               + D+   +LHG +GEDG +Q + E
Sbjct: 70  GAEIEDNGTFVALVPQNQHLFFWDSRTPSSPIKDLGRIDVVMPLLHGPYGEDGTIQGLCE 129

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL--------IS 125
           ++ +PYT  G+ AS+  MDK  +K ++   G+PV    +++ F    +            
Sbjct: 130 MVGVPYTGCGVGASSNGMDKGCAKVLLEHGGIPVGRYHVISDFDWRHRADEVPTPILSWG 189

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGD 184
            P  +KP + GSSLG+  +   Q     ++  ++  H  ++++E  V G  E+ C V+  
Sbjct: 190 LPVFVKPARAGSSLGVTRVDSWQDFESAVV--AARRHDPKVIVEAAVQGAREIECAVLEG 247

Query: 185 ASLDVTEIAVPKS-------DFYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQ 236
            +        P           Y ++ KY +  +  +  PA+IP  +  ++Q  A  A Q
Sbjct: 248 RAGGAPRTTPPGEVVMVSTPGMYDFQSKYFANEAVQLQIPAQIPAGVAAQIQSYARQAFQ 307

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            +G  G+SR DF + P + ++   E+N  PGMTP S++P M    G S+ +L+  ++E A
Sbjct: 308 ILGGEGLSRVDFFYVPDTGEIILNEVNTMPGMTPYSLYPGMWENVGLSYTDLVTELIELA 367

Query: 297 SC 298
             
Sbjct: 368 LA 369


>gi|170782405|ref|YP_001710738.1| D-alanine-D-alanine ligase [Clavibacter michiganensis subsp.
           sepedonicus]
 gi|169156974|emb|CAQ02143.1| D-alanine-D-alanine ligase [Clavibacter michiganensis subsp.
           sepedonicus]
          Length = 371

 Score =  292 bits (749), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 92/359 (25%), Positives = 151/359 (42%), Gaps = 65/359 (18%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           + +L GG SSE  +S ++      A++   F+V  + +       L              
Sbjct: 9   VVLLFGGTSSEHSISCATASGVLGAIDRERFEVIPVGITPRGAFTLQEDDASALALDAAA 68

Query: 50  -----------------------------------KPDLAFNVLHGNFGEDGLVQAILEL 74
                                                D+ F +LHG  GEDG VQ +LEL
Sbjct: 69  LPEVVDDGSRVRWPEDAGSRELTVRDADGTERSLGPVDVVFPILHGTQGEDGTVQGMLEL 128

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--------DSQHLISP 126
             +PY  SG+LASAL MDK  +K V+ + G+ V P   V+R           +    +  
Sbjct: 129 AGLPYVGSGVLASALGMDKHYAKTVLRAAGIEVAPWTTVSRQEWAADPAGVRERAAALGL 188

Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA- 185
           P  +KP + GSS+G+  +       LD     ++   D++L+E  + G E+ C ++ +  
Sbjct: 189 PAFVKPARAGSSVGVSRVVATD--GLDAALEVAFREDDRVLVESGLVGREVECAILDEGP 246

Query: 186 -----SLDVTEIAVPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
                +    EI V   DFY ++ KY  +     V PA +      E++ L+  A +A+ 
Sbjct: 247 GRAPSASVAGEIVVSGRDFYDFDAKYLGADGIDLVCPADMTDAELAELRELSIRAFRAVD 306

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
            RG++R DF            EIN  PG TP+S+FP     +G ++ +L+  +++ A  
Sbjct: 307 ARGLARVDFFLTADG--FVLNEINTMPGFTPISMFPACWEASGLAYPDLISRLLDVALA 363


>gi|306830913|ref|ZP_07464075.1| D-alanine-D-alanine ligase [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
 gi|304426936|gb|EFM30046.1| D-alanine-D-alanine ligase [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
          Length = 348

 Score =  292 bits (749), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 95/334 (28%), Positives = 159/334 (47%), Gaps = 41/334 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           + +L GG S+EREVS+ S ++   A+    F V    + +S   +               
Sbjct: 6   LVLLYGGRSAEREVSVLSAESVMRAINYDKFFVKTYFITQSGDFIKTQEFSSKPADDEKL 65

Query: 47  ---------AHLKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
                      +KP        + F VLHG  GEDG +Q  LE+L++PY  + IL+S+++
Sbjct: 66  MTNATVVESQKIKPSDIYEEGAVVFPVLHGPMGEDGSIQGFLEILKMPYVGTNILSSSVA 125

Query: 91  MDKMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
           MDK+ +K V+ S GVP+   +       + +   +    ++ P  +KP   GSS+GI   
Sbjct: 126 MDKISTKHVLESAGVPLVAYVTYVEGADLEKAVAEVNEKLTYPVFVKPANMGSSVGISKA 185

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202
             ++ +   +  +    +  ++LIE  V+  E+  G++G+A +  T     V    FY Y
Sbjct: 186 DDEEGLRSAIDLAL--KYDSRILIETGVNAREIEVGILGNADVQTTLPGEVVKDVAFYDY 243

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
           + KY     T  +PA I   I +E++  A  A +AIG  G+SR DF        V+  E+
Sbjct: 244 DAKYIDNKITMDIPAHIDSSIMEEMRGYATTAFRAIGGCGLSRCDFFLTE-DGHVYLNEL 302

Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           N  PG T  S++P +    G ++ +L+  +VE A
Sbjct: 303 NTMPGFTQWSMYPLLWENMGLAYSDLIEKLVELA 336


>gi|281412315|ref|YP_003346394.1| D-alanine/D-alanine ligase [Thermotoga naphthophila RKU-10]
 gi|281373418|gb|ADA66980.1| D-alanine/D-alanine ligase [Thermotoga naphthophila RKU-10]
          Length = 303

 Score =  292 bits (749), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 100/301 (33%), Positives = 157/301 (52%), Gaps = 13/301 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK-PDLAFNVLH 59
           +A+LMGG+S ERE+SL SG+    ALE  G++ +  DV       +  LK  D+ FNVLH
Sbjct: 3   VALLMGGVSREREISLRSGERVKKALEKLGYEYTVFDVKEDFLKEVDQLKSFDVVFNVLH 62

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G FGEDG +QAIL+ L I YT S   +S +  DK+ + + +    V +   I +  F   
Sbjct: 63  GTFGEDGTLQAILDFLGIRYTGSDAFSSMICFDKLATYRFLKDI-VEIPDFIEIREFMET 121

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
           S   +  P V+KP + GSS+G+ + + D+     + +         +++++Y+ G E+T 
Sbjct: 122 SP--LGYPCVVKPRREGSSIGVFICESDEEFQHAIKEDLP--QYGSVIVQEYIPGREMTV 177

Query: 180 GVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
            ++    G   L + E+  PK  FY Y  KY+   +  +LPA +     + V+  A  A 
Sbjct: 178 SILETEKGFEVLPILELR-PKRRFYDYVAKYTKGETEFILPAPLNPSEERLVKETALKAF 236

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
              GCRG  R D +F   + + ++LEIN  PG+T  S  P  A   G  F EL+  +++ 
Sbjct: 237 VEAGCRGFGRVDGIF--SNGRFYFLEINTVPGLTETSDLPASAKAGGIEFEELVEIILKS 294

Query: 296 A 296
           A
Sbjct: 295 A 295


>gi|254967013|gb|ACT97542.1| putative D-alanine-D-alanine ligase [uncultured organism]
 gi|254967015|gb|ACT97543.1| putative D-alanine-D-alanine ligase [uncultured organism]
 gi|254967021|gb|ACT97546.1| putative D-alanine-D-alanine ligase [uncultured organism]
          Length = 354

 Score =  292 bits (749), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 93/346 (26%), Positives = 154/346 (44%), Gaps = 53/346 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           +AVL GG SSE  VS  S       ++   + +  I +      +L              
Sbjct: 6   IAVLFGGQSSEHVVSCMSAANVIDQIDKDKYDLLLIGITEEGEWILTPSVEEIRNDTWRD 65

Query: 47  ------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
                                     ++ D+ F VLHG  GEDG VQ +LEL  IPY   
Sbjct: 66  GRTHAVLSPDATRKCVIISEGDATKEVRVDVVFPVLHGLRGEDGTVQGLLELARIPYVGC 125

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--------QHLISPPYVIKPLK 134
           G+LASA+SMDK+ +K +V S G+     + V R  +          ++ +S P  +KP  
Sbjct: 126 GVLASAVSMDKLYTKLIVDSLGIRQADYVPVRRSQLQDMNSVIASVENKLSYPVFVKPSN 185

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194
            GSS G+      + +   L +++   H  ++L+E+ + G E+ C V G    +V    V
Sbjct: 186 AGSSRGVNKADNREELVFALNEAA--KHDRKILVEETIIGHEVECAVFGGGLQEVKASGV 243

Query: 195 PK----SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
            +    ++FY ++ KY +  S  V+  ++P    ++V++ A    +A+   G+SR DF  
Sbjct: 244 GEIMAAAEFYDFDAKYYNAESKTVVDPELPGHAAEDVRKAAVEIFKAVDGYGLSRVDFFV 303

Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                +V + EIN  PG T +S++P +    G S   L+  ++  A
Sbjct: 304 TDA-GEVVFNEINTLPGFTAISMYPMLWEARGISKSRLVDDLINHA 348


>gi|270159086|ref|ZP_06187742.1| D-alanine--D-alanine ligase A [Legionella longbeachae D-4968]
 gi|289166078|ref|YP_003456216.1| D-alanine--D-alanine ligase A [Legionella longbeachae NSW150]
 gi|269987425|gb|EEZ93680.1| D-alanine--D-alanine ligase A [Legionella longbeachae D-4968]
 gi|288859251|emb|CBJ13185.1| D-alanine--D-alanine ligase A [Legionella longbeachae NSW150]
          Length = 364

 Score =  292 bits (749), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 84/353 (23%), Positives = 159/353 (45%), Gaps = 55/353 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS-----------------VG 43
           + +L GG S E E+SL S  +  + L+D  + +  I +D+                  + 
Sbjct: 7   LVLLYGGKSGEHEISLISAASVLAHLDDKKYNIIPIAMDKDGLLHQHQYQDLLASKEKLP 66

Query: 44  LVLAHLKP--------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
           +V    KP              D+ F ++HG   EDG +Q +LEL  + Y    +L+SA+
Sbjct: 67  VVTEKSKPLAGLLINGRLSVDADIVFPIVHGPLYEDGCLQGMLELSGVAYVGCDVLSSAI 126

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVN---------RFTMDSQHLISPPYVIKPLKGGSSLG 140
            MDK  ++++    G+      +++         RF  +       P  +KP   GSS+G
Sbjct: 127 GMDKDMTRRIACINGLKSADYKVLSWHTSTSERQRFCQEVAAEFGWPLFVKPCAMGSSVG 186

Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM-------GDASLDVTEIA 193
           I   K    +   +    +  + +++L+E +V G E+   V+               EI 
Sbjct: 187 IHKAKNMDELINAV--EDALRYDEEILVEAFVTGREIELSVLESVIPAGKPRVSFAGEIR 244

Query: 194 VPK-SDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
           V     FYSY  KY  S  +  ++PA +   +Y+++++ A      + C+G++R DF  +
Sbjct: 245 VNHPDGFYSYSAKYLESGKTDLIIPAHLSHTLYEQLKQAAADIFLRLKCKGMARVDFFVN 304

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA----SCLR 300
             +  +++ E+N  PG T +S++P++   +G ++ +LL  ++  A    +C R
Sbjct: 305 EKTETIYFNEVNTLPGFTSISMYPKLWQASGLAYPDLLDELIRIAMVHQNCRR 357


>gi|266620111|ref|ZP_06113046.1| D-alanine--D-alanine ligase [Clostridium hathewayi DSM 13479]
 gi|288868339|gb|EFD00638.1| D-alanine--D-alanine ligase [Clostridium hathewayi DSM 13479]
          Length = 354

 Score =  292 bits (749), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 95/345 (27%), Positives = 150/345 (43%), Gaps = 53/345 (15%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------- 48
            VL GG SSE  VS  S     + +    + +  I +      +                
Sbjct: 7   VVLFGGQSSEHVVSCMSVVNVINHMNREKYDLLLIGITEDGHWIKTESAEDIESGRWREG 66

Query: 49  -------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                    +K D+ F VLHG FGEDG VQ +LEL  IPY   G
Sbjct: 67  KTSAVISPDATKQCVILTEGDRAEFVKVDVVFPVLHGLFGEDGTVQGLLELARIPYVGCG 126

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--------QHLISPPYVIKPLKG 135
           +LASA+SMDK+ +K VV   GV     + V R  +          +   + P  +KP   
Sbjct: 127 VLASAVSMDKLYTKIVVDDLGVRQAAYVPVMRSDLGDMEAVVGRVEAKFTYPVFVKPSNA 186

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195
           GSS G+      + +   L +++   H  ++L+E+ + G E+ C V G   + V    V 
Sbjct: 187 GSSKGVARADSREELEAALYEAA--KHDRKILVEEMIKGREIECAVFGGGLVPVEASGVG 244

Query: 196 K----SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
           +    ++FY ++ KY + +S  V+  ++P D    V+  A    +A+   G++R DF   
Sbjct: 245 EILAAAEFYDFDAKYYNSDSRTVVNPELPGDAANTVREAAKAIFRAVDGYGLARVDFFV- 303

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                V + EIN  PG T +S++P +   AG S  +L+  +V+ A
Sbjct: 304 KDDGTVVFNEINTLPGFTAISMYPMLWEAAGVSKDQLVDRLVDHA 348


>gi|113955096|ref|YP_729951.1| D-alanyl-alanine synthetase A [Synechococcus sp. CC9311]
 gi|123132673|sp|Q0IC71|DDL_SYNS3 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|113882447|gb|ABI47405.1| D-alanine--D-alanine ligase [Synechococcus sp. CC9311]
          Length = 353

 Score =  292 bits (749), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 92/346 (26%), Positives = 157/346 (45%), Gaps = 52/346 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAG----FKVSQIDVDRSVGLVLAHL------- 49
           + V+ GG S E  VS+ S     +AL++      F+V  + +D+       H+       
Sbjct: 8   IGVVFGGASGEHAVSIRSAITVINALQEGQNRDHFEVVPLYIDQEGRWWPEHIANSVLEQ 67

Query: 50  --------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                     + D+ F VLHG  GEDG VQ +  L+  PY  SG
Sbjct: 68  KQPLAEDSLPHPLPPAGFRSLPIDNDRVDVWFPVLHGPNGEDGTVQGLFTLMGQPYVGSG 127

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD-----------SQHLISPPYVIKP 132
           +L SA+ MDK+  K   ++ G+P  P + +N   ++            +  +  P  +KP
Sbjct: 128 VLGSAVGMDKLAMKAAFAAAGLPQVPYVGLNVADLNHPERQNKLVARIEAELGYPCFVKP 187

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192
              GSS+GI   +    +   L +++   H  +L++E  V   EL C V+G   L  + +
Sbjct: 188 ANMGSSVGISKARHRDQLLAGLKEAA--RHDTRLVVEHGVSARELECAVLGRQQLKASVV 245

Query: 193 AVP--KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
                ++D+Y YE KY+   S  ++PA +P  +  ++Q +A  A  A+   G++R D  +
Sbjct: 246 GEISFEADWYDYETKYTDGCSQTLIPAPLPDQVSAQIQAIALQACTAVHAYGLARVDVFY 305

Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           D  S  ++  EIN  PG T  S++P +   +G +  +L+  +V  A
Sbjct: 306 DEKSGDIWLNEINTLPGFTSQSMYPMLWEASGVALPDLVAQLVHTA 351


>gi|313624508|gb|EFR94508.1| D-alanine--D-alanine ligase [Listeria innocua FSL J1-023]
          Length = 370

 Score =  292 bits (749), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 87/351 (24%), Positives = 158/351 (45%), Gaps = 60/351 (17%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---LAHLKPD------- 52
           +L GG S+E EVSL +  +  +AL+   F+   I +      +   L   K D       
Sbjct: 7   LLYGGKSAEHEVSLQTAFSVINALDLEKFEAKPIYITNDGEWIQGPLLSGKLDFVEQLRF 66

Query: 53  ---------------------------------LAFNVLHGNFGEDGLVQAILELLEIPY 79
                                            + F +LHG  GEDG VQ + E+L IPY
Sbjct: 67  SATDTVRLATTESEKSEGEAISPAVLEADGQETVVFPLLHGPNGEDGTVQGLFEVLNIPY 126

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVI 130
             +G+LAS+ +MDK+  K++ +  G+P  P++ V              + + +++ P  +
Sbjct: 127 VGNGVLASSAAMDKIVMKKIFADAGIPQVPAVAVRLIDWKNYQEEMVTEMEEVLTYPVFV 186

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--D 188
           KP   GSS+GI        +   +  + ++ +  ++++EQ V   E+  GV+G+ +    
Sbjct: 187 KPANLGSSVGISKATNKTELIEAM--TEAFLYDRRVVVEQGVVAREIEMGVLGNDTPVCS 244

Query: 189 VTEIAVPKS---DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
           V    +P+     FY Y+ KY   N+  ++P ++  +I ++++  A  A   +   G+ R
Sbjct: 245 VPGEILPEGAVAKFYDYKAKYQDNNTALIIPTEVEPEILEQMKEYAVQAFLGLDASGLVR 304

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +DF       ++F  E+N  PG TP S++P +    G  +  L+  +V+ A
Sbjct: 305 ADFFLTE-DNQLFLNEVNTMPGFTPYSMYPLLWQETGLPYGALIERLVDLA 354


>gi|71082730|ref|YP_265449.1| D-alanine--D-alanine ligase B [Candidatus Pelagibacter ubique
           HTCC1062]
 gi|123647529|sp|Q4FPK8|DDL_PELUB RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|71061843|gb|AAZ20846.1| D-alanine--D-alanine ligase B [Candidatus Pelagibacter ubique
           HTCC1062]
          Length = 304

 Score =  292 bits (749), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 115/307 (37%), Positives = 181/307 (58%), Gaps = 14/307 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + +L GGIS ER +SL +GK  A  L   G+KV   + D+++   +   KPD+ FN LHG
Sbjct: 5   ILILSGGISKERLISLDTGKQVAKELIKNGYKVLISEPDKNLSKNITSFKPDVIFNALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119
            FGEDG +QAILE  +IPYTHSG++AS+++MDK  SK++     +     I  N      
Sbjct: 65  QFGEDGYIQAILETKKIPYTHSGVIASSIAMDKEISKKIFIKNKILTPKYIKFNHKKNKL 124

Query: 120 -----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
                 +  +  P V+KP+  GSS+ + +     +I  +L    S+   +++LIE+++ G
Sbjct: 125 NIIKLIEKNLKFPVVVKPINEGSSVHVYIC-DKTNILKNLKVLKSY---NEILIEEFIPG 180

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYS-SLNSTHVLPAKIPLDIYKEVQRLAFL 233
            E+   +M + SL   E+  P+  FY YE KY+ S  + H++P  +  +   ++  +A  
Sbjct: 181 REIQVAIMNNKSLGAIELE-PRRKFYDYEAKYNSSAKTKHLIPVDLSKNNLAKITGIARA 239

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           AH+ IGC+G++RSDF F   + K + LEIN QPGMT +S+ PE+A + G SF +L+ W++
Sbjct: 240 AHKIIGCKGVTRSDFKF--FNGKFYLLEINTQPGMTKLSLVPEIAKHKGISFIKLIEWIL 297

Query: 294 EDASCLR 300
           +DAS  R
Sbjct: 298 KDASINR 304


>gi|54114873|dbj|BAD60926.1| D-Ala-D-Lac ligase [Enterococcus raffinosus]
 gi|109240383|dbj|BAE96117.1| D-Ala:D-Lactate ligase [Enterococcus raffinosus]
          Length = 343

 Score =  292 bits (749), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 81/335 (24%), Positives = 151/335 (45%), Gaps = 45/335 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           +AVL GG S E +VS+ S    A+ +    ++   I + +S    L              
Sbjct: 6   IAVLFGGCSEEHDVSVKSAMEVAANINKEKYQPFYIGITKSGAWKLCDKPCRDWENYAGY 65

Query: 47  ---------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
                                     D+   ++HG FGEDG +Q +LEL  IPY    I 
Sbjct: 66  PAVISPDRRIHGLLIQKDGGYESQPVDVVLPMIHGKFGEDGTIQGLLELSGIPYVVCDIQ 125

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145
           +S + MDK  +  VV + G+ V    ++ +        +S P  +KP + GSS G+  + 
Sbjct: 126 SSVICMDKSLAYMVVKNAGIEVPGFRVLQKGDSLEAETLSYPVFVKPARSGSSFGVNKVC 185

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYS 201
           + + +   + ++    +  ++L+E+ V G E+ C ++G+     + +V +I +    F  
Sbjct: 186 RAEELQAAVTEAG--KYDSKILVEEAVSGSEVGCAILGNGNDLITGEVDQIELKHGFFKI 243

Query: 202 Y---ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
           +   + +  S N+   +PA +P ++ +++Q  A   ++ +GCRG++R D         + 
Sbjct: 244 HQEAQPEKGSENAVIRVPAALPDEVREQIQETAKKIYRVLGCRGLARIDLFLRE-DGSIV 302

Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
             E+N  PG T  S +P M   AG++  E+L  ++
Sbjct: 303 LNEVNTMPGFTSYSRYPRMMTAAGFTLSEILDRLI 337


>gi|323465695|gb|ADX69382.1| D-alanine--D-alanine ligase [Lactobacillus helveticus H10]
          Length = 360

 Score =  292 bits (749), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 90/340 (26%), Positives = 154/340 (45%), Gaps = 49/340 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           + ++ GG SSE EVS+ SG+    A++   F V  I +                      
Sbjct: 7   VGLIFGGNSSEYEVSIISGRNIYKAIDKEKFDVHPIWITNEGYFANEEESFKVLEDPSYQ 66

Query: 52  ----------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
                                 D+ F ++HGN GEDG++Q +  L+  P+    +LA+A+
Sbjct: 67  VKNPHKVHNISNLIELENLPEIDVFFPIVHGNLGEDGVLQGLFRLMNKPFVGDDVLAAAV 126

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-----------QHLISPPYVIKPLKGGSS 138
           +MDK  +K +    GVPV   I + RF  D               +     +KP   GSS
Sbjct: 127 TMDKEFTKILAQRVGVPVADWIAIKRFEYDDKNNDKLDYEKVAEKLGRDMFVKPSNQGSS 186

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL---DVTEIAVP 195
           +G+  +         L +  ++ + D++L+E+ V G E+   V+G+       V +I   
Sbjct: 187 VGVSHVTNADEYAAALKE--AFKYDDKVLVEETVPGTEVETAVLGNDKPIVAGVGQITNA 244

Query: 196 KSDFYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
           K  FYSY+ KY   +++ +  PA +P +I   ++R A   ++   C G++R D +  P  
Sbjct: 245 KGSFYSYKNKYDDNSTSKLQIPADLPQEIIDTIRRNARKVYEVTECSGMARIDSMLTP-G 303

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            KV   E+N  PG T +S++P++   AG  + EL+  ++E
Sbjct: 304 GKVVLTEVNALPGFTNISMYPKLFEEAGVPYTELITRLIE 343


>gi|330470823|ref|YP_004408566.1| D-alanine--D-alanine ligase [Verrucosispora maris AB-18-032]
 gi|328813794|gb|AEB47966.1| D-alanine--D-alanine ligase [Verrucosispora maris AB-18-032]
          Length = 320

 Score =  292 bits (749), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 95/314 (30%), Positives = 152/314 (48%), Gaps = 18/314 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VL GG+S ER+VSL SG+    AL   G +    D D ++   LA   PD     LHG
Sbjct: 11  VVVLAGGLSYERDVSLRSGRRVLDALRSVGVEAELRDADVALLPALAADPPDAVVIALHG 70

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG ++ +L+L  +PY      AS L+ DK  +K V+   G+     + +       
Sbjct: 71  ATGEDGSLRGVLDLCGVPYVGCDARASRLAWDKPSAKAVLREAGIATPDWVALPHDRFSE 130

Query: 121 Q----------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                        +  P ++KP +GGS LG  V++   ++P  ++    + +    L+E+
Sbjct: 131 LGAVAVLDRIVDRLGLPLMVKPAQGGSGLGAAVVRDAAALPAAMV--GCFAYDPTALVER 188

Query: 171 YVDGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE 226
           YV G+++   V+    G  +L   EI VP++  Y Y  +Y++  +T   PA++   + ++
Sbjct: 189 YVSGMDVAVSVIDLGDGPQALPPVEI-VPRNGVYDYAARYTAGRTTWHTPARLEPAVAEK 247

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           V  +A  AH A+G R +SR D + D        LE+NV PGMT  S+ P     AG  F 
Sbjct: 248 VGEVALAAHTALGLRDLSRVDLIVDSA-GLPHVLEVNVSPGMTETSLLPLAVQAAGLDFG 306

Query: 287 ELLLWMVEDASCLR 300
            ++  +V  A   R
Sbjct: 307 RVIGSLVARAVTRR 320


>gi|213418537|ref|ZP_03351603.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Typhi str. E01-6750]
          Length = 252

 Score =  292 bits (749), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 91/255 (35%), Positives = 138/255 (54%), Gaps = 13/255 (5%)

Query: 51  PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
               F  LHG  GEDG +Q +LELL +PYT SG++ASALSMDK+RSK +    G+PV P 
Sbjct: 1   FQKVFIALHGRGGEDGTLQGMLELLGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPW 60

Query: 111 ILVNRFTMDS---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN 161
           + + R   +             +  P ++KP + GSS+G+  + ++ ++   L  S ++ 
Sbjct: 61  VALTRAEFEKGLSEEQKARISALGLPLIVKPSREGSSVGMTKVVEENALQGAL--SLAFQ 118

Query: 162 HGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL 221
           H D++LIE+++ G E T  ++G+  L    I  P   FY YE KY S  + +  PA +  
Sbjct: 119 HDDEILIEKWLCGPEFTVAIVGEEILPSIRIQ-PAGTFYDYEAKYLSDETQYFCPAGLEA 177

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYA 281
                +Q L   A +A+GC G  R D + D    + + LE N  PGMT  S+ P  A  A
Sbjct: 178 SQEAALQSLVLQAWKALGCTGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQA 236

Query: 282 GYSFRELLLWMVEDA 296
           G SF +L++ ++E A
Sbjct: 237 GMSFSQLVVRILELA 251


>gi|29468046|gb|AAN60573.1| D-alanine:D-lactate ligase [Enterococcus faecium]
          Length = 342

 Score =  292 bits (749), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 85/337 (25%), Positives = 148/337 (43%), Gaps = 44/337 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           +A++ GG S E +VS+ S    A+ ++   F    I + ++    L              
Sbjct: 6   VAIIFGGCSEEHDVSVKSAIEIAANIDTEKFDPHYIGITKNGVWKLCKKPCTEWEADSLP 65

Query: 47  --------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
                                  + D+AF VLHG  GEDG +Q +  L  IPY    I +
Sbjct: 66  AILSPDRKTHGLLVMKESEYETRRIDVAFPVLHGKCGEDGAIQGLFVLSGIPYVGCDIQS 125

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           SA+ MDK  +  +  + G+ V    ++++        ++ P  +KP + GSS G+  +  
Sbjct: 126 SAVCMDKSLAYILTKNAGIAVPEFQMIDKGDKPEAGALTYPVFVKPARSGSSFGVTKVNG 185

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSY 202
            + +   +   ++  +  ++LIEQ + G E+ C VMG+       +V +I +    F  +
Sbjct: 186 TEELNAAI--EAAGQYDGKILIEQAISGCEVGCAVMGNEDDLIVGEVDQIRLSHGIFRIH 243

Query: 203 ---ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
              E +  S N+   +PA IP++    VQ  A   ++ +GCRG++R D         +  
Sbjct: 244 QENEPEKGSENAMITVPADIPVEERNRVQETAKKVYRVLGCRGLARVDLFLQE-DGGIVL 302

Query: 260 LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            E+N  PG T  S +P M A AG +   L+  ++  A
Sbjct: 303 NEVNTLPGFTSYSRYPRMVAAAGITLPALIDSLITLA 339


>gi|223984928|ref|ZP_03635031.1| hypothetical protein HOLDEFILI_02333 [Holdemania filiformis DSM
           12042]
 gi|223963097|gb|EEF67506.1| hypothetical protein HOLDEFILI_02333 [Holdemania filiformis DSM
           12042]
          Length = 350

 Score =  292 bits (749), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 100/340 (29%), Positives = 154/340 (45%), Gaps = 47/340 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           +AVL GG S E  VSL S      AL+   + V +I +D      L              
Sbjct: 7   VAVLFGGCSDEYSVSLHSAAGVLRALDPERYTVVKIGIDPQGDWFLTSASAAEIEADQWH 66

Query: 47  -----------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                    +  D+ F VLHG  GEDG +Q + EL  IP+   G
Sbjct: 67  TASDQRLRLTLARRNFELKDETGEAVDVDVFFPVLHGRNGEDGTLQGMFELFHIPFVGCG 126

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ----HLISPPYVIKPLKGGSSL 139
           + AS L MDK  S Q+    G+ V P ++     +D +      +  P  +KP +GGSS+
Sbjct: 127 MDASLLGMDKALSHQLARQNGIEVSPFVVFAYSEIDQKRESLKRLHLPCFVKPARGGSSI 186

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA---SLDVTEIAVPK 196
           GI  I   + +  D   + +  H  ++LIE+ V G E+ C ++       L   +     
Sbjct: 187 GITKINTWEEL--DAACACAAKHDRRILIEEAVSGEEIGCSILETPDGLVLGAVDRIHLN 244

Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256
           SDF+ YE KY   ++    PA++P  + ++++RLA    +   C+G+ R D    P  ++
Sbjct: 245 SDFFDYEEKYVDTHAEVECPAQLPDFVSEQMRRLARKLWEIHHCQGLVRVDCFLTP-DQR 303

Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           + + EIN  PGMT  S +P M   AG SF  +L  ++E+A
Sbjct: 304 ILFNEINTLPGMTATSRYPRMMGQAGISFETILDTLIEEA 343


>gi|56123462|gb|AAV74570.1| D-alanine:D-lactate ligase [Clostridium sp. MLG101]
          Length = 343

 Score =  292 bits (749), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 85/337 (25%), Positives = 148/337 (43%), Gaps = 44/337 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           +A++ GG S E +VS+ S    A+ ++   F    I + ++    L              
Sbjct: 6   VAIIFGGCSEEHDVSVKSAIEIAANIDTEKFDPHYIGITKNGVWKLCKKPCTEWEADSLP 65

Query: 47  --------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
                                  + D+AF VLHG  GEDG +Q +  L  IPY    I +
Sbjct: 66  AILSPDRKTHGLLVMKESEYETRRIDVAFPVLHGKCGEDGAIQGLFVLSGIPYVGCDIQS 125

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           SA+ MDK  +  +  + G+ V    ++++        ++ P  +KP + GSS G+  +  
Sbjct: 126 SAVCMDKSLAYILTKNAGIAVPEFQMIDKGDKPEAGALTYPVFVKPARSGSSFGVTKVNG 185

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSY 202
            + +   +   ++  +  ++LIEQ + G E+ C VMG+       +V +I +    F  +
Sbjct: 186 TEELNAAI--EAAGQYDGKILIEQAISGCEVGCAVMGNEDDLIVGEVDQIRLSHGIFRIH 243

Query: 203 ---ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
              E +  S N+   +PA IP++    VQ  A   ++ +GCRG++R D         +  
Sbjct: 244 QENEPEKGSENAMITVPADIPVEERNRVQETAKKVYRVLGCRGLARVDLFLQE-DGGIVL 302

Query: 260 LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            E+N  PG T  S +P M A AG +   L+  ++  A
Sbjct: 303 NEVNTLPGFTSYSRYPRMVAAAGITLPALIDSLITLA 339


>gi|217388366|ref|YP_002333395.1| D-alanine--D-lactate ligase [Enterococcus faecalis]
 gi|56123444|gb|AAV74561.1| D-alanine:D-lactate ligase [Clostridium sp. MLG856-1]
 gi|56123454|gb|AAV74566.1| D-alanine:D-lactate ligase [Clostridium sp. MLG392]
 gi|56123456|gb|AAV74567.1| D-alanine:D-lactate ligase [Clostridium sp. MLG661]
 gi|61191896|gb|AAX39412.1| D-alanine:D-lactate ligase [Enterococcus faecium]
 gi|216409908|dbj|BAH02343.1| vanB2 [Enterococcus faecalis]
          Length = 342

 Score =  292 bits (748), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 85/337 (25%), Positives = 147/337 (43%), Gaps = 44/337 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           +A++ GG S E +VS+ S    A+ ++   F    I + ++    L              
Sbjct: 6   VAIIFGGCSEEHDVSVKSAIEIAANIDTEKFDPHYIGITKNGVWKLCKKPCTEWEADSLP 65

Query: 47  --------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
                                  + D+AF VLHG  GEDG +Q +  L  IPY    I +
Sbjct: 66  AILSPDRKTHGLLVMKESEYETRRIDVAFPVLHGKCGEDGAIQGLFVLSGIPYVGCDIQS 125

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           SA  MDK  +  +  + G+ V    ++++        ++ P  +KP + GSS G+  +  
Sbjct: 126 SAACMDKSLAYILTKNAGIAVPEFQMIDKGDKPEAGALTYPVFVKPARSGSSFGVTKVNG 185

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSY 202
            + +   +   ++  +  ++LIEQ + G E+ C VMG+       +V +I +    F  +
Sbjct: 186 TEELNAAI--EAAGQYDGKILIEQAISGCEVGCAVMGNEDDLIVGEVDQIRLSHGIFRIH 243

Query: 203 ---ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
              E +  S N+   +PA IP++    VQ  A   ++ +GCRG++R D         +  
Sbjct: 244 QENEPEKGSENAMITVPADIPVEERNRVQETAKKVYRVLGCRGLARVDLFLQE-DGGIVL 302

Query: 260 LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            E+N  PG T  S +P M A AG +   L+  ++  A
Sbjct: 303 NEVNTLPGFTSYSRYPRMMAAAGITLPALIDSLITLA 339


>gi|306833025|ref|ZP_07466157.1| D-alanine-D-alanine ligase [Streptococcus bovis ATCC 700338]
 gi|304424924|gb|EFM28058.1| D-alanine-D-alanine ligase [Streptococcus bovis ATCC 700338]
          Length = 348

 Score =  292 bits (748), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 96/334 (28%), Positives = 160/334 (47%), Gaps = 41/334 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           + +L GG S+EREVS+ S ++   A+    F V    + +S   +               
Sbjct: 6   LVLLYGGRSAEREVSVLSAESVMRAINYDKFFVKTYFITQSGDFIKTQEFSSKPADDEKL 65

Query: 47  ---------AHLKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
                      +KP        + F VLHG  GEDG +Q  LE+L++PY  + IL+S+++
Sbjct: 66  MTNATVVESQKIKPSDIYEEGAVVFPVLHGPMGEDGSIQGFLEILKMPYVGTNILSSSVA 125

Query: 91  MDKMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
           MDK+ +K V+ S GVP+   +       + +   +    ++ P  IKP   GSS+GI   
Sbjct: 126 MDKISTKHVLESAGVPLVAYVTYVEGADLEKAVAEVNEKLTYPVFIKPANMGSSVGISKA 185

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202
             ++ +   +  +    +  ++LIE  V+  E+  G++G+A +  T     V    FY Y
Sbjct: 186 DDEEGLRSAIDLAL--KYDSRILIETGVNAREIEVGILGNADVQTTLPGEVVKDVAFYDY 243

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
           + KY     T  +PA I  +I +E++  A  A +AIG  G+SR DF        V+  E+
Sbjct: 244 DAKYIDNKITMDIPAHIDSNIMEEMRGYATTAFRAIGGCGLSRCDFFLTE-DGHVYLNEL 302

Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           N  PG T  S++P +    G ++ +L+  +VE A
Sbjct: 303 NTMPGFTQWSMYPLLWENMGLAYSDLIEKLVELA 336


>gi|281490888|ref|YP_003352868.1| D-alanine--D-alanine ligase [Lactococcus lactis subsp. lactis
           KF147]
 gi|281374646|gb|ADA64166.1| D-alanine--D-alanine ligase [Lactococcus lactis subsp. lactis
           KF147]
          Length = 349

 Score =  292 bits (748), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 94/333 (28%), Positives = 152/333 (45%), Gaps = 42/333 (12%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD---------- 52
           +L GG S+EREVS+ S ++   A+  + F V    + +    +      D          
Sbjct: 8   LLYGGRSAEREVSVLSAESVMRAVNYSRFVVKTYFITKGGEFIKTQEFTDKPAEEEKLLT 67

Query: 53  --------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
                               + F VLHG  GEDG +Q  LE+L + Y    IL+++ +MD
Sbjct: 68  NDLAESYPKISPAAIYEKDAVVFPVLHGPMGEDGSIQGFLEILRLAYVGPNILSASSTMD 127

Query: 93  KMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           K+ +K V  + GVP  P +             +    +  P  +KP   GSS+GI  +  
Sbjct: 128 KLLAKHVFEAVGVPQVPYVAAFADENQGEIAQEVVEKLEFPVFVKPANMGSSVGISKVDD 187

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG---DASLDVTEIAVPKSDFYSYE 203
              +   L  S ++ + ++++IEQ VD  E+ C V+G   D S  +    V   +FY Y 
Sbjct: 188 LADLQPAL--SEAYKYDNRVVIEQGVDAREIECAVLGNNSDVSATLPGEVVKDVEFYDYN 245

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            KY        +PAK+P D+ +++Q  A  A++A+   G+SR DF        V+  EIN
Sbjct: 246 SKYIDNKIQMDIPAKVPADLAQKMQEYAIKAYKAVNGTGLSRCDFFVTK-DGNVYLNEIN 304

Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             PG T  S++P +    G S+ +L+  +V+ A
Sbjct: 305 AIPGFTQWSMYPLLWENMGLSYSDLIEKLVDLA 337


>gi|229005687|ref|ZP_04163391.1| D-alanine--D-alanine ligase [Bacillus mycoides Rock1-4]
 gi|228755621|gb|EEM04962.1| D-alanine--D-alanine ligase [Bacillus mycoides Rock1-4]
          Length = 304

 Score =  292 bits (748), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 91/303 (30%), Positives = 159/303 (52%), Gaps = 9/303 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGG+SSE++VSL +G+   + L+ + ++V  I ++    LV      D+A   LHG
Sbjct: 3   VGVIMGGVSSEKQVSLMTGEEMIAHLDKSKYEVVPIKLNDKKELVEKVRNLDIALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFT 117
            +GEDG +Q  LE L +PYT S +L+S + MDK  SK+++    +     I +       
Sbjct: 63  EYGEDGTIQGTLETLGVPYTGSVMLSSGICMDKNMSKKMIRYEDIQTPDWIHLSNTEELQ 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
           +D    +  P V+KP  GGSS+G+ ++    S+   L     W    +++IE+Y+ G E+
Sbjct: 123 LDEIDKMGYPLVVKPNSGGSSVGVKIVYDKDSLLSSLEDVFKW--DSEIVIEKYIKGEEI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC ++    L +  I    ++F+ Y  KY  + +   +  ++P   Y+ V   A   ++A
Sbjct: 181 TCSILDGKLLPIISIQ-HTAEFFDYHAKYDDIATIEEV-VELPATTYERVVEAAMTCYRA 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           + C   +R D +        + +E+N  PGMT  S+ P+ A  AG S+ +LL  ++E + 
Sbjct: 239 LKCSVYARVDIII--KDGIPYVMEVNTLPGMTKNSLLPKSAHAAGISYSKLLDMIIETSL 296

Query: 298 CLR 300
            +R
Sbjct: 297 QIR 299


>gi|55823487|ref|YP_141928.1| D-alanyl-alanine synthetase A [Streptococcus thermophilus CNRZ1066]
 gi|81559066|sp|Q5LYJ2|DDL_STRT1 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|55739472|gb|AAV63113.1| D-alanine-D-alanine ligase [Streptococcus thermophilus CNRZ1066]
          Length = 348

 Score =  292 bits (748), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 83/329 (25%), Positives = 158/329 (48%), Gaps = 41/329 (12%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD---------- 52
           +L GG S+EREVS+ S ++   A++   F+V    + +S   +      +          
Sbjct: 8   LLYGGRSAEREVSVLSAESVMRAVDYNAFEVKTYFITQSGDFIKTQEFIETPGDDEKLMT 67

Query: 53  --------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
                               + F VLHG  GEDG +Q  LE L++PY  + +L+S+++MD
Sbjct: 68  NDTVEASQAIKPSDIYEEDAVVFPVLHGPMGEDGSIQGFLETLKLPYVGTNVLSSSVAMD 127

Query: 93  KMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           K+ +K+++   GVP     +      +     ++   ++ P  +KP   GSS+GI   + 
Sbjct: 128 KIMTKRILEVAGVPQVAYTVYIEGEDLEAAVAETLEKLTFPVFVKPANMGSSVGISKAEN 187

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYEL 204
           +  +   +  +    +  ++LIEQ V   E+  G++G+ ++  T+    V    FY Y+ 
Sbjct: 188 ESELRSAIDLAL--KYDSRILIEQGVVAREIEVGILGNTTVKTTDPGEVVKDVAFYDYQA 245

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           KY     T  +PA++P+++  +++  A  A +A+G  G++R DF        ++  E+N 
Sbjct: 246 KYIDNKITMDIPARVPVEVMTQMRAYAAKAFRALGGCGLARCDFFLTE-DGAIYLNELNT 304

Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            PG T  S++P +    G S+ +++  +V
Sbjct: 305 MPGFTQWSMYPLLWENMGLSYSDIIKELV 333


>gi|157364709|ref|YP_001471476.1| D-alanyl-alanine synthetase A [Thermotoga lettingae TMO]
 gi|167012332|sp|A8F8C8|DDL_THELT RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|157315313|gb|ABV34412.1| D-alanine--D-alanine ligase [Thermotoga lettingae TMO]
          Length = 296

 Score =  292 bits (748), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 107/300 (35%), Positives = 164/300 (54%), Gaps = 12/300 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK-PDLAFNVLH 59
           +AVL+GGIS ER +SL SG+    AL+  G  V  IDVD +   +   LK  ++ FN LH
Sbjct: 3   IAVLLGGISRERPISLKSGENVLKALKKLGHDVVPIDVDENFLEIAPKLKEFEVVFNALH 62

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G+FGEDG VQAIL+ + + YT S +LASA+  DK+ + +V+    V      +V +   +
Sbjct: 63  GHFGEDGTVQAILDWVGVSYTGSKVLASAICFDKVMTYRVLDGY-VNFPEYTIVKKPVKE 121

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
           S      P VIKP K GSS+G+ +      +  DL +       ++++I++Y++G ELT 
Sbjct: 122 SP--YGFPCVIKPRKEGSSIGVHICDNSNQLYNDLSEEL--KKYNEMMIQRYIEGRELTV 177

Query: 180 GVM---GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
            ++       L V E+  PK  FY Y  KY S  +  +LPA + ++ Y++V   +  A +
Sbjct: 178 SILEIGKPQILPVLELK-PKRRFYDYTAKYVSGMTEFILPAPLSVEEYQKVANSSLRAFE 236

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             GC G +R D +        + LE+N  PG+T +S  P  A  AG SF EL+  +++ A
Sbjct: 237 LCGCEGFARVDGIL--KDNVFYVLELNTIPGLTDLSDMPASAKAAGMSFEELVDAIIQTA 294


>gi|108763447|ref|YP_633878.1| D-alanine--D-alanine ligase [Myxococcus xanthus DK 1622]
 gi|108467327|gb|ABF92512.1| D-alanine--D-alanine ligase [Myxococcus xanthus DK 1622]
          Length = 326

 Score =  292 bits (748), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 108/301 (35%), Positives = 168/301 (55%), Gaps = 9/301 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VLMGG   ERE+SL +G+A  +ALE  G +V++I     +   L   + D+AF  LHG
Sbjct: 5   VGVLMGGWGEEREISLKTGEAVVAALESRGHQVTRIFAGPGLDRALRAAELDVAFVALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG VQ +LELLE+PYT SG+LASAL+M+K  +K+      +       V R     
Sbjct: 65  RMGEDGRVQGLLELLELPYTGSGVLASALAMNKPFAKRFFRLHNLATPHGYTVAREDAWR 124

Query: 121 QHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
                  +  P V+KP  GGSS+G+ ++++ +++   + Q+S +  G + L+E+YV G E
Sbjct: 125 ALALHGDLGFPCVVKPACGGSSMGLALVREPEALAFAVAQASRF--GGEALVERYVAGRE 182

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +T G++G   L   E+A P+  F  ++ KY    + +  P ++       V+ LA  A++
Sbjct: 183 VTVGILGGQVLGSCEVATPREGF-DFDAKYK-GGAAYFCPPRLSPTRVANVEALALAAYR 240

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           A+GCRG +R D +       V  LE+N  PG TP S+ P++AA AG  F  L   ++  A
Sbjct: 241 ALGCRGQARVDLMCSDTENDV-VLEVNTLPGFTPTSLLPKIAARAGLDFAALTERILALA 299

Query: 297 S 297
           +
Sbjct: 300 T 300


>gi|89257158|ref|YP_514520.1| D-alanyl-alanine synthetase A [Francisella tularensis subsp.
           holarctica LVS]
 gi|122500155|sp|Q2A182|DDL_FRATH RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|89144989|emb|CAJ80349.1| D-alanine--D-alanine ligase B [Francisella tularensis subsp.
           holarctica LVS]
          Length = 296

 Score =  292 bits (748), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 105/297 (35%), Positives = 162/297 (54%), Gaps = 8/297 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-DRSVGLVLAHLKPDLAFNVLH 59
           + VL GG S EREVSL SGKA   +L   G+    +D   + +   L  LKPD  F  LH
Sbjct: 6   IVVLYGGDSPEREVSLKSGKAVLDSLISQGYDAVGVDASGKELVAKLLELKPDKCFVALH 65

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G  GE+G V A+LE+LEI +T S + +S ++MDKM SK+++    +P   +  +    + 
Sbjct: 66  GEDGENGRVSALLEMLEIKHTSSSMKSSVITMDKMISKEILMHHRMPTPMAKFLT-DKLV 124

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
           ++  IS P  +KP  GGSS+    +K  Q +     ++S +    +++IEQ+V G E+T 
Sbjct: 125 AEDEISFPAAVKPSSGGSSIATFKVKSIQELKHAYEEASKY---GEVMIEQWVTGKEITV 181

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
            ++ D       I  P+++FY YE KYS   S +  P+ +      EV++LA  A+  +G
Sbjct: 182 AIVNDEVYSSVWIE-PQNEFYDYESKYS-GKSIYHSPSGLCEQKELEVRQLAKKAYDLLG 239

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           C G +R DF++D      + +EIN  PGMT  S+ P+ AA  G  F   +  ++E A
Sbjct: 240 CSGHARVDFIYDDRGN-FYIMEINSSPGMTDNSLSPKSAAAEGVDFDSFVKRIIEQA 295


>gi|11345403|gb|AAG34691.1|AF310956_6 D-alanine:D-lactate ligase [Enterococcus faecium]
 gi|1730460|emb|CAB05883.1| D-alanine:D-alanine ligase-related protein [Enterococcus faecium]
 gi|1763668|gb|AAB39760.1| D-alanine:D-alanine ligase-related protein [Enterococcus faecium]
 gi|33336052|gb|AAQ12894.1| D-alanine:D-lactate ligase [Enterococcus faecium]
          Length = 342

 Score =  292 bits (748), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 85/337 (25%), Positives = 147/337 (43%), Gaps = 44/337 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           +A++ GG S E +VS+ S    A+ ++   F    I + ++    L              
Sbjct: 6   VAIIFGGCSEEHDVSVKSAIEIAANIDTEKFDPHYIGITKNGVWKLCKKPCTEWEADSLP 65

Query: 47  --------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
                                  + D+AF VLHG  GEDG +Q +  L  IPY    I +
Sbjct: 66  AILSPDRKTHGLLVMKESEYETRRIDVAFPVLHGKCGEDGAIQGLFVLSGIPYVGCDIQS 125

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           SA  MDK  +  +  + G+ V    ++++        ++ P  +KP + GSS G+  +  
Sbjct: 126 SAACMDKSLAYILTKNAGIAVPEFQMIDKGDKPEAGALTYPVFVKPARSGSSFGLTKVNG 185

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSY 202
            + +   +   ++  +  ++LIEQ + G E+ C VMG+       +V +I +    F  +
Sbjct: 186 TEELNAAI--EAAGQYDGKILIEQAISGCEVGCAVMGNEDDLIVGEVDQIRLSHGIFRIH 243

Query: 203 ---ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
              E +  S N+   +PA IP++    VQ  A   ++ +GCRG++R D         +  
Sbjct: 244 QENEPEKGSENAMITVPADIPVEERNRVQETAKKVYRVLGCRGLARVDLFLQE-DGGIVL 302

Query: 260 LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            E+N  PG T  S +P M A AG +   L+  ++  A
Sbjct: 303 NEVNTLPGFTSYSRYPRMMAAAGITLPALIDSLITLA 339


>gi|227877871|ref|ZP_03995887.1| D-alanine-D-alanine ligase [Lactobacillus crispatus JV-V01]
 gi|256844272|ref|ZP_05549758.1| D-alanine-D-alanine ligase [Lactobacillus crispatus 125-2-CHN]
 gi|256849329|ref|ZP_05554762.1| D-alanine-D-alanine ligase [Lactobacillus crispatus MV-1A-US]
 gi|262047654|ref|ZP_06020608.1| D-alanine-D-alanine ligase [Lactobacillus crispatus MV-3A-US]
 gi|293380562|ref|ZP_06626621.1| D-ala D-ala ligase [Lactobacillus crispatus 214-1]
 gi|312976971|ref|ZP_07788720.1| D-alanine--D-alanine ligase [Lactobacillus crispatus CTV-05]
 gi|227862533|gb|EEJ70036.1| D-alanine-D-alanine ligase [Lactobacillus crispatus JV-V01]
 gi|256613350|gb|EEU18553.1| D-alanine-D-alanine ligase [Lactobacillus crispatus 125-2-CHN]
 gi|256714105|gb|EEU29093.1| D-alanine-D-alanine ligase [Lactobacillus crispatus MV-1A-US]
 gi|260572054|gb|EEX28620.1| D-alanine-D-alanine ligase [Lactobacillus crispatus MV-3A-US]
 gi|290922876|gb|EFD99819.1| D-ala D-ala ligase [Lactobacillus crispatus 214-1]
 gi|310896299|gb|EFQ45364.1| D-alanine--D-alanine ligase [Lactobacillus crispatus CTV-05]
          Length = 360

 Score =  292 bits (748), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 90/340 (26%), Positives = 153/340 (45%), Gaps = 49/340 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           + ++ GG SSE EVS+ SG+    A++   F V  I +                      
Sbjct: 7   VGLIFGGNSSEYEVSIVSGRNIYKAIDKDKFDVHPIWITNEGYFANEEESFKVLDDPSYQ 66

Query: 52  ----------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
                                 D+ F ++HGN GEDG++Q +  L++ P+    +L +A+
Sbjct: 67  VKNPHKVNNISNLIELENLPEIDVFFPIVHGNLGEDGVLQGLFRLMDKPFVGDDVLGAAV 126

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-----------QHLISPPYVIKPLKGGSS 138
           +MDK  +K +    GVPV   I + RF  D               +     +KP   GSS
Sbjct: 127 TMDKEFTKILAQRVGVPVADWISIKRFEYDDKKNAKLNYEKVAEKLGRDMFVKPSNQGSS 186

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL---DVTEIAVP 195
           +G+  +         L +  ++ + D++L+E+ V G E+   V+G+       V +I   
Sbjct: 187 VGVSHVTNADEYTAALKE--AFKYDDKVLVEETVPGTEVETAVLGNDKPIVAGVGQITNA 244

Query: 196 KSDFYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
           K  FY+YE KY   +++ +  PA +P +I   V+  A   + A  C G++R D +  P  
Sbjct: 245 KGSFYTYENKYDDNSTSKLQIPADLPQEIIDTVRENARKVYAATECSGMARIDSMLTP-G 303

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            KV   E+N  PG T +S++P++   AG  + EL+  ++E
Sbjct: 304 GKVVLTEVNALPGFTNISMYPKLFEEAGVPYSELITRLIE 343


>gi|254967025|gb|ACT97548.1| putative D-alanine-D-alanine ligase [uncultured organism]
          Length = 354

 Score =  292 bits (748), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 93/346 (26%), Positives = 153/346 (44%), Gaps = 53/346 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           +AVL GG SSE  VS  S       ++   + +  I +      +L              
Sbjct: 6   IAVLFGGQSSEHVVSCMSAANVIDQIDKDKYDLLLIGITEEGEWILTPSVEEIRNDTWRD 65

Query: 47  ------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
                                     ++ D+ F VLHG  GEDG VQ +LEL  IPY   
Sbjct: 66  GRTHAVLSPDATRKCVIISEGDATKEVRVDVVFPVLHGLRGEDGTVQGLLELARIPYVGC 125

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--------QHLISPPYVIKPLK 134
           G+LASA+SMDK+ +K +V S G+     + V R  +          ++ +S P  +KP  
Sbjct: 126 GVLASAVSMDKLYTKLIVDSLGIRQADYVPVRRSQLQDMNSVIASVENKLSYPVFVKPSN 185

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194
            GSS G+      + +   L +++   H  ++L+E+ + G E+ C V G    +V    V
Sbjct: 186 AGSSRGVNKADNREELVFALNEAA--KHDRKILVEETIIGHEVECAVFGGGLQEVKASGV 243

Query: 195 PK----SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
            +    ++FY ++ KY +  S  V+  ++P    +E ++ A    +A+   G+SR DF  
Sbjct: 244 GEIMAAAEFYDFDAKYYNAESKTVVDPELPGHAAEEKKKAAVEIFKAVDGYGLSRVDFFV 303

Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                +V + EIN  PG T +S++P +    G S   L+  ++  A
Sbjct: 304 TDA-GEVVFNEINTLPGFTAISMYPMLWEARGISKSRLVDDLINHA 348


>gi|227832984|ref|YP_002834691.1| D-alanine-D-alanine ligase [Corynebacterium aurimucosum ATCC
           700975]
 gi|262182528|ref|ZP_06041949.1| D-alanine-D-alanine ligase [Corynebacterium aurimucosum ATCC
           700975]
 gi|254767727|sp|C3PFZ9|DDL_CORA7 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|227454000|gb|ACP32753.1| D-alanine-D-alanine ligase [Corynebacterium aurimucosum ATCC
           700975]
          Length = 356

 Score =  292 bits (748), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 98/351 (27%), Positives = 163/351 (46%), Gaps = 56/351 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           +AV+ GG SSE  VS  S  A    L+   ++V  I + R       +            
Sbjct: 9   VAVVYGGRSSEHSVSCISAGAIMEHLDPEKYEVVPIGITREGTWTQGNRAGLNIVDGRLP 68

Query: 50  ------------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPY 79
                                         + D+   VLHG +GEDG VQ + EL  IPY
Sbjct: 69  EVELHDELALSLNPATRGRIHNVTRHEHYTEVDVIVPVLHGPYGEDGTVQGLFELSGIPY 128

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVN-RFTMDS--QHLISPPYVIKPLKGG 136
             +G+LASA+ MDK  +K+++ + G+PV P  ++    T+D   +  +  P  +KP +GG
Sbjct: 129 VGAGVLASAVGMDKEFTKKLLVAEGLPVAPQEVLTGEATLDDLQKERLGLPVFVKPARGG 188

Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG--DASLDVTEIA- 193
           SS+G+  +   + +   L  + ++   D++LIE  + G E+  GV+   D SL  +  A 
Sbjct: 189 SSIGVSKVSAWEDLEAAL--TLAYESDDKVLIEPEISGAEVEVGVLERPDGSLQASVPAK 246

Query: 194 -----VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                  +  FY ++ KY     +  +PA +  ++  E+++ A  A +A+G  G+SR DF
Sbjct: 247 ILGTTESEEGFYDFDAKYIDEGVSAAIPAPLSEELTAELRQRAIEAFRALGASGLSRVDF 306

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
                S      E+N  PG TP+S++P++ A  G  + ELL  +++ A   
Sbjct: 307 FVSDYS--YCINEVNTFPGFTPISMYPQVFAAVGVGYAELLDTLIQTALAR 355


>gi|254967096|gb|ACT97590.1| putative D-alanine-D-alanine ligase [uncultured organism]
          Length = 310

 Score =  292 bits (748), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 102/305 (33%), Positives = 166/305 (54%), Gaps = 12/305 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59
           + VLMGG S E EVS  +G A A AL   G+K   ++++ R+V   +  L  ++ FN +H
Sbjct: 6   IIVLMGGPSEEAEVSRRTGAAIAEALVSKGYKAQTLELNPRTVLKDIDSLGGEVVFNAIH 65

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G +GEDG +Q +LE+ EIPYT SGI+A A+ M+K  SK V     +P   S   N     
Sbjct: 66  GRYGEDGALQGLLEMAEIPYTGSGIMAHAVGMNKKVSKDVFKGANIPTARSESYNGNLES 125

Query: 120 SQHLI-------SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
           ++ +I       + P V+K    GSS+G+ +++++  +   +  + +  +   L++EQ++
Sbjct: 126 AEAIIDHIRKEFTIPVVVKSATQGSSIGVTIVREESQLEAAV--TEALKYDPILVVEQFL 183

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
           DG E T  V+   +L V EI  P S  Y Y+ KY+   + +++PA I  ++  E+QR+  
Sbjct: 184 DGREFTVAVLDGKALSVIEIR-PHSGEYDYKSKYTVGATEYLVPAPISDEMTAEMQRIGE 242

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           L ++ +   G+ R D + D    K++ LE N  PGMT  S+ P+ A   G  F  L   +
Sbjct: 243 LVYREVQGSGVIRVDIMTDHAD-KMYVLEYNTVPGMTVTSLVPKAANEMGIDFPTLCEKI 301

Query: 293 VEDAS 297
           +  AS
Sbjct: 302 LLTAS 306


>gi|15672323|ref|NP_266497.1| D-alanyl-alanine synthetase A [Lactococcus lactis subsp. lactis
           Il1403]
 gi|13878460|sp|Q9CIL5|DDL_LACLA RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|12723209|gb|AAK04439.1|AE006271_2 D-alanine-D-alanine ligase [Lactococcus lactis subsp. lactis
           Il1403]
 gi|326405920|gb|ADZ62991.1| D-alanine-D-alanine ligase [Lactococcus lactis subsp. lactis CV56]
          Length = 349

 Score =  292 bits (748), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 94/333 (28%), Positives = 152/333 (45%), Gaps = 42/333 (12%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD---------- 52
           +L GG S+EREVS+ S ++   A+  + F V    + +    +      D          
Sbjct: 8   LLYGGRSAEREVSVLSAESVMRAVNYSRFVVKTYFITKGGEFIKTQEFTDKPAEEEKLLT 67

Query: 53  --------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
                               + F VLHG  GEDG +Q  LE+L + Y    IL+++ +MD
Sbjct: 68  NDLAESYPKISPAAIYEKAAVVFPVLHGPMGEDGSIQGFLEILRLAYVGPNILSASSTMD 127

Query: 93  KMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           K+ +K V  + GVP  P +             +    +  P  +KP   GSS+GI  +  
Sbjct: 128 KLLAKHVFEAVGVPQVPYVAAFADENQGEIAQEVVEKLEFPVFVKPANMGSSVGISKVDD 187

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG---DASLDVTEIAVPKSDFYSYE 203
              +   L  S ++ + ++++IEQ VD  E+ C V+G   D S  +    V   +FY Y 
Sbjct: 188 LADLQPAL--SEAYKYDNRVVIEQGVDAREIECAVLGNNSDVSATLPGEVVKDVEFYDYN 245

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            KY        +PAK+P D+ +++Q  A  A++A+   G+SR DF        V+  EIN
Sbjct: 246 SKYIDNKIQMDIPAKVPADLAQKMQEYAIKAYKAVNGTGLSRCDFFVTK-DGNVYLNEIN 304

Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             PG T  S++P +    G S+ +L+  +V+ A
Sbjct: 305 AIPGFTQWSMYPLLWENMGLSYSDLIEKLVDLA 337


>gi|313638777|gb|EFS03864.1| D-alanine--D-alanine ligase [Listeria seeligeri FSL S4-171]
          Length = 370

 Score =  292 bits (748), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 88/351 (25%), Positives = 158/351 (45%), Gaps = 60/351 (17%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---LAHLKPD------- 52
           +L GG S+E EVSL +  +  +AL    F+   I +      V   L   K D       
Sbjct: 7   LLYGGKSAEHEVSLQTAFSVINALNLDKFEAQPIYITNEGEWVQGPLLSGKLDFVEQLRF 66

Query: 53  ---------------------------------LAFNVLHGNFGEDGLVQAILELLEIPY 79
                                            + F +LHG  GEDG VQ + E+L IPY
Sbjct: 67  IATDKIELALTETEKSSGELISPAVLEADGQETVVFPLLHGPNGEDGTVQGLFEVLNIPY 126

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILV---------NRFTMDSQHLISPPYVI 130
             +G+LAS+ +MDK+  K++ +   +P  P++ V         +    + + ++  P  +
Sbjct: 127 VGNGVLASSAAMDKIVMKKIFADAAIPQVPAVAVRLIDWKNFKDEMIAEMEEVLEYPVFV 186

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--D 188
           KP   GSS+GI      Q +   +  + ++ +  ++++EQ V   E+  GV+G+ +    
Sbjct: 187 KPANLGSSVGISKATNKQELTEAM--TEAFLYDRRVVVEQGVVAREIEMGVLGNDTPICS 244

Query: 189 VTEIAVPKS---DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
           V    +P+     FY Y+ KY   N+T ++P ++  ++  +++  A  A   +   G+ R
Sbjct: 245 VPGEILPEGAVAKFYDYKAKYQDNNTTLIIPTEVEPEVLAQMKEYAIQAFLGLDASGLVR 304

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +DF       ++F  E+N  PG TP S++P +   +G  +  L+  +V+ A
Sbjct: 305 ADFFLT-DDNQLFLNEVNTMPGFTPYSMYPLLWQESGLPYPALIERLVDLA 354


>gi|284801184|ref|YP_003413049.1| D-alanyl-alanine synthetase A [Listeria monocytogenes 08-5578]
 gi|284994326|ref|YP_003416094.1| D-alanyl-alanine synthetase A [Listeria monocytogenes 08-5923]
 gi|284056746|gb|ADB67687.1| D-alanyl-alanine synthetase A [Listeria monocytogenes 08-5578]
 gi|284059793|gb|ADB70732.1| D-alanyl-alanine synthetase A [Listeria monocytogenes 08-5923]
          Length = 370

 Score =  292 bits (748), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 87/351 (24%), Positives = 159/351 (45%), Gaps = 60/351 (17%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---LAHLKPD------- 52
           +L GG S+E EVSL +  +  +AL+   F+ + I +      +   L   K D       
Sbjct: 7   LLYGGKSAEHEVSLQTAFSVINALDLEKFEAAPIYITNEGEWIQGPLLSGKLDFVEQLRF 66

Query: 53  ---------------------------------LAFNVLHGNFGEDGLVQAILELLEIPY 79
                                            + F +LHG  GEDG VQ + E+L IPY
Sbjct: 67  SATETVKLAATESEKSEGEAISPAVLEADGQETVVFPLLHGPNGEDGTVQGLFEVLNIPY 126

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVI 130
             +G+LAS+ +MDK+  K++ +  G+P  P++ V              + + +++ P  +
Sbjct: 127 VGNGVLASSAAMDKIVMKKIFADAGIPQVPAVAVRLIDWKNYQEEMVAEMEEVLTYPVFV 186

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--D 188
           KP   GSS+GI      + +      + ++ +  ++++EQ V   E+  GV+G+ +    
Sbjct: 187 KPANLGSSVGISKATNKKEL--ADAMTEAFLYDRRVVVEQGVVAREIEMGVLGNDTPVCS 244

Query: 189 VTEIAVPKS---DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
           V    +P+     FY Y+ KY   N+  ++P ++  +I ++++  A  A   +   G+ R
Sbjct: 245 VPGEILPEGAVATFYDYKAKYQDNNTALIIPTEVDPEILEQMKEYAVQAFLGLDASGLVR 304

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +DF       ++F  E+N  PG TP S++P +    G  +  L+  +V+ A
Sbjct: 305 ADFFLTE-DNQLFLNEVNTMPGFTPYSMYPLLWQETGLPYGALIERLVDLA 354


>gi|256397141|ref|YP_003118705.1| D-alanyl-alanine synthetase A [Catenulispora acidiphila DSM 44928]
 gi|256363367|gb|ACU76864.1| D-alanine/D-alanine ligase [Catenulispora acidiphila DSM 44928]
          Length = 394

 Score =  292 bits (748), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 94/376 (25%), Positives = 161/376 (42%), Gaps = 82/376 (21%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALED----AGFKVSQIDVDRSVGLVLAHLK------ 50
           +AV+ GG SSE  +S  +  +   AL +      +++  I +      VLA L       
Sbjct: 13  VAVVFGGRSSEHAISCVTAGSVLDALRNGPEPQRYEIVPIGIASDGRWVLADLPDGGDLN 72

Query: 51  --------PDLAFNV----------------------------------------LHGNF 62
                   P++                                            LHG +
Sbjct: 73  LAITDGRLPEIGLPASAERANLVTMAGDPTARELTVHEPGAVPKSLGEVDVVLPLLHGPY 132

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ- 121
           GEDG +Q +LEL  +PY  SG+LASA+SMDK   K++++  G  V P  +V      ++ 
Sbjct: 133 GEDGTLQGLLELAGVPYVGSGVLASAVSMDKEFMKRLLAQAGFEVGPYEVVRPRDWGTEE 192

Query: 122 ---------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                      +  P  +KP + GSS+GI  +   + +   +   ++  H  ++L+E  +
Sbjct: 193 GRAAVRLAVEELGYPVFVKPARAGSSMGITKVDAPEELDQAI--DAARRHDPKVLVEAAI 250

Query: 173 DGIELTCGVMGD--------ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           +G E+ CGV+          ASL           FY ++ KY   ++   +PA++  +  
Sbjct: 251 EGREIECGVLEGAGPQDPAEASLPAELRVTGPHAFYDFQAKYLDGSTEVDIPARLSAEEI 310

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLF----DPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280
           ++++  A    + +GC G++R DF +    D    +    EIN  PG TP S+FP+M   
Sbjct: 311 EDIRGQAVGVFETLGCEGLARVDFFYQESADGGPGRFIVNEINTMPGFTPTSMFPQMWQA 370

Query: 281 AGYSFRELLLWMVEDA 296
           AG S+ EL+  +++ A
Sbjct: 371 AGLSYPELIARLIDTA 386


>gi|302339386|ref|YP_003804592.1| D-alanine/D-alanine ligase [Spirochaeta smaragdinae DSM 11293]
 gi|301636571|gb|ADK81998.1| D-alanine/D-alanine ligase [Spirochaeta smaragdinae DSM 11293]
          Length = 363

 Score =  292 bits (748), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 99/345 (28%), Positives = 160/345 (46%), Gaps = 51/345 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           +A+L GG S E EVSL S  +    ++   F V+ I VD+     L              
Sbjct: 6   VALLFGGKSGEHEVSLVSAASVFKHIDKERFDVALIAVDKDGAWFLQPQPLYDEKEGGFV 65

Query: 47  ---------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
                                  L  +L F VLHG FGEDG VQ +LEL ++PY  +G+L
Sbjct: 66  VERKEENRVYAVPAGGLRTMAKPLDIELVFPVLHGTFGEDGTVQGLLELCDLPYAGAGVL 125

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD-----------SQHLISPPYVIKPLK 134
            S+L MDK   K++    G+PV P   +   +             +    S P  +KP +
Sbjct: 126 GSSLCMDKAAVKRIWIQAGLPVVPFEELREVSWKRSKGAAASVRRAVDRFSFPLFVKPSR 185

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD--VTEI 192
            GSS+G+   + ++ +   +  + S+   D+LLIE  V   E+ C V+G+  L       
Sbjct: 186 AGSSVGVSRCETEEGLYAAIEDAFSF--DDKLLIEPAVQAKEIECSVIGNQELTTFAPGE 243

Query: 193 AVPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
            VP  DFY Y+ KY     +  ++P+ +  +  K V++++  A++     G +R D  ++
Sbjct: 244 IVPSHDFYDYDAKYIDPDGANLLIPSSLNEEQQKMVRQISARAYRVAEAEGFARVDCFYE 303

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             + KV   EIN  PG T +S+FP++    G ++ ELL  +++ A
Sbjct: 304 EATGKVLLNEINTIPGFTKISMFPKLCENGGVAYGELLTKLLDLA 348


>gi|283468526|emb|CAP18807.1| putative D-ala D-ala ligase [Chthoniobacter flavus Ellin428]
          Length = 308

 Score =  292 bits (748), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 116/306 (37%), Positives = 172/306 (56%), Gaps = 15/306 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG  SER+VSL+SG   A+AL   G  V+++DV+ S  +V A    D+AFNV+HG
Sbjct: 10  IAVLMGGPGSERKVSLASGAGVANALRTLGADVTEVDVNGSDFIVPA--GTDVAFNVIHG 67

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG +Q ILE   + YT  G+  S L++DK+  KQ      VP     ++      +
Sbjct: 68  TFGEDGQIQRILESRGVAYTGEGVANSELAIDKIAKKQCFQKHHVPTAAFEILRDG---A 124

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  PYV+K  K GSS+G+ +++  +   +      +W++G +LL+E +++G ELT G
Sbjct: 125 NPTLPLPYVVKAPKEGSSVGVFIVR--EEAKVADTMREAWSYGKELLVEDFINGRELTVG 182

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSS------LNSTHVLPAKIPLDIYKEVQRLAFLA 234
           V+GD +L + EI  P  DFY+++ KY          + H  PA I  ++ + VQ +A  A
Sbjct: 183 VLGDQALPIIEIK-PAKDFYNFDNKYPFLNPKAGGAAEHTCPAMISDELTRRVQEVALAA 241

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            +AI      R D L      + + LEIN  PGMT VS+ PE AA AG S+ EL   ++E
Sbjct: 242 ARAIHLETYCRVDVLLTGA-GEPYVLEINTIPGMTQVSLLPEAAAAAGISYAELCARVIE 300

Query: 295 DASCLR 300
            +   R
Sbjct: 301 LSLARR 306


>gi|253752073|ref|YP_003025214.1| D-alanine--D-alanine ligase [Streptococcus suis SC84]
 gi|253753898|ref|YP_003027039.1| D-alanine--D-alanine ligase [Streptococcus suis P1/7]
 gi|253755227|ref|YP_003028367.1| D-alanine--D-alanine ligase [Streptococcus suis BM407]
 gi|251816362|emb|CAZ51993.1| D-alanine--D-alanine ligase [Streptococcus suis SC84]
 gi|251817691|emb|CAZ55439.1| D-alanine--D-alanine ligase [Streptococcus suis BM407]
 gi|251820144|emb|CAR46476.1| D-alanine--D-alanine ligase [Streptococcus suis P1/7]
 gi|319758439|gb|ADV70381.1| D-alanine--D-alanine ligase [Streptococcus suis JS14]
          Length = 348

 Score =  292 bits (747), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 93/332 (28%), Positives = 156/332 (46%), Gaps = 41/332 (12%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV----------------- 45
           +L GG S+EREVS+ S ++   A+    F V    + ++   +                 
Sbjct: 8   LLYGGRSAEREVSVLSAESVMRAINYDKFFVKTYFISQTGDFIKTQEFSQTPSADEKLMT 67

Query: 46  ------LAHLKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
                    ++P        + F VLHG  GEDG +Q  LE+L +PY  + IL+S+++MD
Sbjct: 68  NATIVEEQKIRPSDIYEEKAVVFPVLHGPMGEDGSIQGFLEVLRMPYVGTNILSSSVAMD 127

Query: 93  KMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           K+ +K+V+ S G+   P + V           + +  ++ P  +KP   GSS+GI   + 
Sbjct: 128 KITTKRVLESAGISQVPYVAVIEGENIDDKIAEIEGKLTYPVFVKPANMGSSVGISKAED 187

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYEL 204
              +   L    ++ +  ++L+EQ V+  E+  G++G+A +  T     V    FY Y+ 
Sbjct: 188 LAGLRKALDL--AFKYDSRVLVEQGVNAREIEVGLLGNADVKTTLPGEVVKDVAFYDYDA 245

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           KY     T  +PAKI   I   ++  A  A +AIG  G+SR DF        +F  E+N 
Sbjct: 246 KYIDNKITMEIPAKIDESIMDIMRDNAAKAFRAIGGCGLSRCDFFLTE-DGDIFLNELNT 304

Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            PG T  S++P +    G ++ +L+  +V  A
Sbjct: 305 MPGFTQWSMYPLLWDNMGLAYPDLIEELVRLA 336


>gi|189347029|ref|YP_001943558.1| D-alanyl-alanine synthetase A [Chlorobium limicola DSM 245]
 gi|229463739|sp|B3EDF4|DDL_CHLL2 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|189341176|gb|ACD90579.1| D-alanine/D-alanine ligase [Chlorobium limicola DSM 245]
          Length = 363

 Score =  292 bits (747), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 92/351 (26%), Positives = 160/351 (45%), Gaps = 57/351 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD--------------------- 39
           +A+L GG S+E E+S+ S ++ + A++   ++V  + +                      
Sbjct: 6   IALLFGGKSTEHEISIISARSISGAIDRERYRVVPVYITHEGAWFSGDSAAEILSLDLSS 65

Query: 40  -----------------------RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLE 76
                                  +           D+ F  LHG++GEDG VQ +L+ + 
Sbjct: 66  IMRKSSVGNTETLLREMIRNSAEKPFDFNFRAAGIDVVFIALHGSYGEDGRVQGLLDTMG 125

Query: 77  IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---------ISPP 127
           IPYT  G+ ASA++MDK  +K   +  GV   PSI ++  +  +               P
Sbjct: 126 IPYTGCGVSASAIAMDKALTKLCAADAGVATAPSITLDADSYLADPEPVHELVDSTFGYP 185

Query: 128 YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA-- 185
             +KP   GSS+GI  +    ++P  L  + S++   ++L+E  V G E+   V+G+   
Sbjct: 186 LFVKPASLGSSVGISKVHLPAALPEALKVACSYDR--KILVEAAVSGKEIEVAVLGNDRP 243

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
              V     P SDFY ++ KY    +   +PA++P  +   V+  A   ++A+GCRG+SR
Sbjct: 244 VASVPGEVEPGSDFYDFQDKYIHNTAKTFIPARLPDKLLDSVRCSAITVYKALGCRGMSR 303

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            DF  +  +  +   EIN  PG T +S++P++   +G  F  L+  ++  A
Sbjct: 304 VDFFVNEENGSIVLNEINTIPGFTDISMYPKLFEASGIPFTALIDKLLHYA 354


>gi|289426939|ref|ZP_06428663.1| D-ala D-ala ligase N-terminal domain protein [Propionibacterium
           acnes J165]
 gi|289159879|gb|EFD08059.1| D-ala D-ala ligase N-terminal domain protein [Propionibacterium
           acnes J165]
 gi|313807118|gb|EFS45613.1| D-ala D-ala ligase [Propionibacterium acnes HL087PA2]
 gi|313819314|gb|EFS57028.1| D-ala D-ala ligase [Propionibacterium acnes HL046PA2]
 gi|313819963|gb|EFS57677.1| D-ala D-ala ligase [Propionibacterium acnes HL036PA1]
 gi|313823244|gb|EFS60958.1| D-ala D-ala ligase [Propionibacterium acnes HL036PA2]
 gi|313824968|gb|EFS62682.1| D-ala D-ala ligase [Propionibacterium acnes HL063PA1]
 gi|314924802|gb|EFS88633.1| D-ala D-ala ligase [Propionibacterium acnes HL036PA3]
 gi|314960640|gb|EFT04742.1| D-ala D-ala ligase [Propionibacterium acnes HL002PA2]
 gi|314978058|gb|EFT22152.1| D-ala D-ala ligase [Propionibacterium acnes HL072PA2]
 gi|314986219|gb|EFT30311.1| D-ala D-ala ligase [Propionibacterium acnes HL005PA2]
 gi|314989565|gb|EFT33656.1| D-ala D-ala ligase [Propionibacterium acnes HL005PA3]
 gi|315084861|gb|EFT56837.1| D-ala D-ala ligase [Propionibacterium acnes HL027PA2]
 gi|315086034|gb|EFT58010.1| D-ala D-ala ligase [Propionibacterium acnes HL002PA3]
 gi|315088247|gb|EFT60223.1| D-ala D-ala ligase [Propionibacterium acnes HL072PA1]
 gi|327327929|gb|EGE69703.1| D-alanine--D-alanine ligase [Propionibacterium acnes HL096PA3]
 gi|327443970|gb|EGE90624.1| D-ala D-ala ligase [Propionibacterium acnes HL013PA2]
 gi|328754950|gb|EGF68566.1| D-ala D-ala ligase [Propionibacterium acnes HL020PA1]
 gi|332675776|gb|AEE72592.1| D-alanine--D-alanine ligase [Propionibacterium acnes 266]
          Length = 365

 Score =  292 bits (747), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 94/355 (26%), Positives = 149/355 (41%), Gaps = 62/355 (17%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           +AV+ GG+SSE  +S  S     +A++   F VS + +      V               
Sbjct: 6   VAVIFGGMSSEHSISCLSAANVVAAIDAERFDVSGVGISPEGIWVRYGADEILALPGTGQ 65

Query: 47  -------------------------AHLKPD---LAFNVLHGNFGEDGLVQAILELLEIP 78
                                         D   + F VLHG FGEDG +Q +LE+  + 
Sbjct: 66  LPTVEVGDRPLVSVKQMPEGTCIVDTEGNVDAVQVVFPVLHGPFGEDGTIQGLLEMAGVR 125

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--------DSQHLISPPYVI 130
           Y   G+ ASA  MDK  +K ++S  GV V P ++V              +   +  P  +
Sbjct: 126 YVGCGVAASANCMDKHLTKMILSEAGVLVGPYVVVRDHEWREDRNAILKAASRLEYPVFV 185

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190
           KP +GGSS+GI  +   + +   +    +  H  ++LIEQ + G E+ C V+        
Sbjct: 186 KPARGGSSIGISRVTSPEHLETAI--EMAREHDSKVLIEQGIRGREIECSVIDGRHGAAP 243

Query: 191 EIAVPK-------SDFYSYELKYSSL--NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241
             +VP          FY +E KY S    ++    A +     + VQ++A  A Q +GC 
Sbjct: 244 RASVPGEIVVHDPDGFYDFEAKYLSGEQKASVQAHANLDDATRRRVQKVAIKAFQVLGCE 303

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           G++R D    P    V+  E N  PG T  S FP M   +G ++ +++  ++E A
Sbjct: 304 GLARIDTFVTP-DGAVYVNEPNTMPGFTRSSGFPLMWQASGMTYAQIVSELIELA 357


>gi|50842843|ref|YP_056070.1| D-alanine--D-alanine ligase [Propionibacterium acnes KPA171202]
 gi|50840445|gb|AAT83112.1| D-alanine--D-alanine ligase [Propionibacterium acnes KPA171202]
 gi|313813315|gb|EFS51029.1| D-ala D-ala ligase [Propionibacterium acnes HL025PA1]
 gi|315105985|gb|EFT77961.1| D-ala D-ala ligase [Propionibacterium acnes HL030PA1]
          Length = 365

 Score =  292 bits (747), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 94/355 (26%), Positives = 149/355 (41%), Gaps = 62/355 (17%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           +AV+ GG+SSE  +S  S     +A++   F VS + +      V               
Sbjct: 6   VAVIFGGMSSEHSISCLSAANVVAAIDAERFDVSGVGISPEGIWVRYGADEILALPGTGQ 65

Query: 47  -------------------------AHLKPD---LAFNVLHGNFGEDGLVQAILELLEIP 78
                                         D   + F VLHG FGEDG +Q +LE+  + 
Sbjct: 66  LPTVEVGDRPLVSVKQMPEGTCIVDTEGNVDAVQVVFPVLHGPFGEDGTIQGLLEMAGVR 125

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--------DSQHLISPPYVI 130
           Y   G+ ASA  MDK  +K ++S  GV V P ++V              +   +  P  +
Sbjct: 126 YVGCGVAASANCMDKHLTKMILSEAGVLVGPYVVVRDHEWREDRNAVLKAASRLEYPVFV 185

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190
           KP +GGSS+GI  +   + +   +    +  H  ++LIEQ + G E+ C V+        
Sbjct: 186 KPARGGSSIGISRVTSPEHLETAI--EMAREHDSKVLIEQGIRGREIECSVIDGRHGAAP 243

Query: 191 EIAVPK-------SDFYSYELKYSSL--NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241
             +VP          FY +E KY S    ++    A +     + VQ++A  A Q +GC 
Sbjct: 244 RASVPGEIVVHDPDGFYDFEAKYLSGEQKASVQAHANLDDATRRRVQKVAIKAFQVLGCE 303

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           G++R D    P    V+  E N  PG T  S FP M   +G ++ +++  ++E A
Sbjct: 304 GLARIDTFVTP-DGAVYVNEPNTMPGFTRSSGFPLMWQASGMTYAQIVSELIELA 357


>gi|254967019|gb|ACT97545.1| putative D-alanine-D-alanine ligase [uncultured organism]
          Length = 354

 Score =  292 bits (747), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 92/346 (26%), Positives = 153/346 (44%), Gaps = 53/346 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           +AVL GG SSE  VS  S       ++   + +  I +      +L              
Sbjct: 6   IAVLFGGQSSEHVVSCMSAANVIDQIDKDKYDLLLIGITEEGEWILTPSVEEIRNDTWRD 65

Query: 47  ------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
                                     ++ D+ F VLHG  GEDG VQ +LEL  IPY   
Sbjct: 66  GRTHAVLSPDATRKCVIISEGDATKEVRVDVVFPVLHGLRGEDGTVQGLLELARIPYVGC 125

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--------QHLISPPYVIKPLK 134
           G+LASA+SMDK+ +K +V S G+     + V R  +          ++ +S P  +KP  
Sbjct: 126 GVLASAVSMDKLYTKLIVDSLGIRQADYVPVRRSQLQDMNSVIASVENKLSYPVFVKPSN 185

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194
            GSS G+      + +   L +++   H  ++L+E+ + G E+ C V G    +V    V
Sbjct: 186 AGSSRGVNKADNREELVFALNEAA--KHDRKILVEETIIGHEVECAVFGGGLQEVKASGV 243

Query: 195 PK----SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
            +    ++FY ++ KY +  S  V+  ++P    +++ + A    +A+   G+SR DF  
Sbjct: 244 GEIMAAAEFYDFDAKYYNAESKTVVDPELPGHAAEDINKAAVEIFKAVDGYGLSRVDFFV 303

Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                +V + EIN  PG T +S++P +    G S   L+  ++  A
Sbjct: 304 TDA-GEVVFNEINTLPGFTAISMYPMLWEARGISKSRLVDDLINHA 348


>gi|254515239|ref|ZP_05127300.1| D-alanine--D-alanine ligase B [gamma proteobacterium NOR5-3]
 gi|219677482|gb|EED33847.1| D-alanine--D-alanine ligase B [gamma proteobacterium NOR5-3]
          Length = 315

 Score =  292 bits (747), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 107/283 (37%), Positives = 151/283 (53%), Gaps = 8/283 (2%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGN 61
           AVL GG S EREVSLSS K   +AL D G++   +D              D+AFN+ HG 
Sbjct: 13  AVLFGGTSGEREVSLSSAKTVLAALADGGYQPLALDTGEPEWWTGLK-GVDIAFNIQHGV 71

Query: 62  FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ 121
            GEDG+ Q +L  L +  T S +L SAL+MDK+RSKQ+  + G+P     LVN  T D+Q
Sbjct: 72  GGEDGVTQGLLHSLGVVGTGSQVLGSALAMDKLRSKQIWRALGLPTADFALVNAHT-DAQ 130

Query: 122 HLIS--PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
            L++      +KP   GSSLG+  +   +S       ++ +  GDQ+L E+++DG E T 
Sbjct: 131 ALLADWGAAFVKPCSEGSSLGMTRVDSPESFLQACESAAVF--GDQILAERFIDGPEYTV 188

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
            ++GD +L    I   + +FY YE KY +  + + +P  +  D    +  LA  A  A+G
Sbjct: 189 AILGDRALPPIHIESAR-EFYDYEAKYKANTTRYNIPCGLSADEETALCTLALKAFAALG 247

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAG 282
           C    R D + D  S K   LE+N  PGMT  S+ P  A  AG
Sbjct: 248 CSVWGRVDLMRD-SSGKFQLLEVNTVPGMTDHSLVPMAATAAG 289


>gi|209549694|ref|YP_002281611.1| D-alanyl-alanine synthetase A [Rhizobium leguminosarum bv. trifolii
           WSM2304]
 gi|209535450|gb|ACI55385.1| D-alanine/D-alanine ligase [Rhizobium leguminosarum bv. trifolii
           WSM2304]
          Length = 357

 Score =  292 bits (747), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 95/347 (27%), Positives = 159/347 (45%), Gaps = 51/347 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           +AVL GG S+E EVS+ S      AL+   +    + + R    +L++            
Sbjct: 10  IAVLFGGRSAEHEVSILSATNVMGALKPEKYDAIPVFITREGQWLLSNFEDGVLARPSSG 69

Query: 50  --------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                     + D+ F VLHG  GEDG VQ + E+  +P    G
Sbjct: 70  TEICIVPGGRGRMLAIPAHGAPHELARIDILFPVLHGLHGEDGSVQGLAEVARVPLAGCG 129

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSL 139
           IL SA ++DK  +K+++ + G+PV  S+ +      S    +  +  P  IKP + GSS+
Sbjct: 130 ILGSAAALDKDIAKRLLRAAGLPVARSVTMREDAAPSLAALESELGLPLFIKPARQGSSV 189

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD-----VTEIAV 194
           G+  +   Q     L  + ++ H   LL E++V G E+   V+ DA+ +       EI  
Sbjct: 190 GVAKVHASQEFAPAL--AEAFRHDRMLLAEEFVAGREIEFSVLEDAAGELFVSRPGEIVP 247

Query: 195 PKS-DFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            +S  FYSY+ KY     +   +PA +P ++   ++ +A  A +A+GC G++R DF    
Sbjct: 248 AESHGFYSYDAKYIDEKGAALKVPADLPEEVEAAMRDMAASAFRAVGCDGMARVDFFLT- 306

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
              +    EIN  PG T +S++ +  A +G  + E++  +VE     
Sbjct: 307 QDMRFLVNEINTIPGFTDISMYSKAMAASGVGYAEIIDRLVEHGLAR 353


>gi|56123446|gb|AAV74562.1| D-alanine:D-lactate ligase [Enterococcus faecium]
 gi|56123464|gb|AAV74571.1| D-alanine:D-lactate ligase [Clostridium sp. MLG245]
 gi|56123466|gb|AAV74572.1| D-alanine:D-lactate ligase [Enterococcus faecium]
          Length = 342

 Score =  292 bits (747), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 85/337 (25%), Positives = 147/337 (43%), Gaps = 44/337 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           +A++ GG S E +VS+ S    A+ ++   F    I + ++    L              
Sbjct: 6   VAIIFGGCSEEHDVSVKSAIEIAANIDTEKFDPHYIGITKNGVWKLCKKPCTEWEADSLP 65

Query: 47  --------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
                                  + D+AF VLHG  GEDG +Q +  L  IPY    I +
Sbjct: 66  AILSPDRKTHGLLVMKESEYETRRIDVAFPVLHGKCGEDGAIQGLFVLSGIPYVGCDIQS 125

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           SA  MDK  +  +  + G+ V    ++++        ++ P  +KP + GSS G+  +  
Sbjct: 126 SAACMDKSLAYILTKNAGIAVPEFQIIDKGDKPEAGALTYPVFVKPARSGSSFGVTKVNG 185

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSY 202
            + +   +   ++  +  ++LIEQ + G E+ C VMG+       +V +I +    F  +
Sbjct: 186 TEELNAAI--EAAGQYDGKILIEQAISGCEVGCAVMGNEDDLIVGEVDQIRLSHGIFRIH 243

Query: 203 ---ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
              E +  S N+   +PA IP++    VQ  A   ++ +GCRG++R D         +  
Sbjct: 244 QENEPEKGSENAMITVPADIPVEERNRVQETAKKVYRVLGCRGLARVDLFLQE-DGGIVL 302

Query: 260 LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            E+N  PG T  S +P M A AG +   L+  ++  A
Sbjct: 303 NEVNTMPGFTSYSRYPRMVAAAGITLPALIDSLITLA 339


>gi|289434122|ref|YP_003463994.1| D-alanine-D-alanine ligase [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
 gi|289170366|emb|CBH26906.1| D-alanine-D-alanine ligase [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
          Length = 370

 Score =  292 bits (747), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 88/351 (25%), Positives = 158/351 (45%), Gaps = 60/351 (17%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---LAHLKPD------- 52
           +L GG S+E EVSL +  +  +AL    F+   I +      V   L   K D       
Sbjct: 7   LLYGGKSAEHEVSLQTAFSVINALNLDKFEAQPIYITNEGEWVQGPLLSGKLDFVEQLRF 66

Query: 53  ---------------------------------LAFNVLHGNFGEDGLVQAILELLEIPY 79
                                            + F +LHG  GEDG VQ + E+L IPY
Sbjct: 67  AATDKIELALTETEKSSGELISPAVLEADGQETVVFPLLHGPNGEDGTVQGLFEVLNIPY 126

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILV---------NRFTMDSQHLISPPYVI 130
             +G+LAS+ +MDK+  K++ +   +P  P++ V         +    + + ++  P  +
Sbjct: 127 VGNGVLASSAAMDKIVMKKIFADAAIPQVPAVAVRLIDWKNFKDEMIAEMEEVLEYPVFV 186

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--D 188
           KP   GSS+GI      Q +   +  + ++ +  ++++EQ V   E+  GV+G+ +    
Sbjct: 187 KPANLGSSVGISKATNKQELTEAM--TEAFLYDRRVVVEQGVVAREIEMGVLGNDTPICS 244

Query: 189 VTEIAVPKS---DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
           V    +P+     FY Y+ KY   N+T ++P ++  ++  +++  A  A   +   G+ R
Sbjct: 245 VPGEILPEGAVAKFYDYKAKYQDNNTTLIIPTEVEPEVLAQMKDYAIQAFLGLDASGLVR 304

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +DF       ++F  E+N  PG TP S++P +   +G  +  L+  +V+ A
Sbjct: 305 ADFFLT-DDNQLFLNEVNTMPGFTPYSMYPLLWQESGLPYPALIERLVDLA 354


>gi|24379077|ref|NP_721032.1| D-alanyl-alanine synthetase A [Streptococcus mutans UA159]
 gi|26006956|sp|P95803|DDL_STRMU RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|24376976|gb|AAN58338.1|AE014904_1 putative D-alanine-D-alanine ligase [Streptococcus mutans UA159]
          Length = 349

 Score =  292 bits (747), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 92/336 (27%), Positives = 155/336 (46%), Gaps = 44/336 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD-------- 52
           + +L GG S+ER+VS+ S ++   A+    F V    + ++ G  +   + D        
Sbjct: 6   LVLLYGGRSAERDVSVLSAESVMRAINYDNFLVKTYFITQA-GDFIKTQEFDSQPSETDK 64

Query: 53  -----------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
                                  + F VLHG  GEDG +Q  LE+L++PY  + IL+S++
Sbjct: 65  LMTNDTIIASQKIKPSDIYEEEAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGTNILSSSV 124

Query: 90  SMDKMRSKQVVSSCG-VPVCPSILVNRFT------MDSQHLISPPYVIKPLKGGSSLGII 142
           +MDK+ + QV+ S   +P    + +           + +  +  P  +KP   GSS+GI 
Sbjct: 125 AMDKITTNQVLESATTIPQVAYVALIEGEPLESKLAEVEEKLIYPVFVKPANMGSSVGIS 184

Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA--VPKSDFY 200
             +    +   +  +    +  ++LIEQ VD  E+  G++G+  +  T     V    FY
Sbjct: 185 KAENRTDLKQAIALAL--KYDSRVLIEQGVDAREIEVGILGNTDVKTTLPGEIVKDVAFY 242

Query: 201 SYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260
            YE KY     T  +PA+I   I ++++  A  A + +GC G+SR DF       KV+  
Sbjct: 243 DYEAKYIDNKITMAIPAEIDPVIVEKMRDYAATAFRTLGCCGLSRCDFFLTE-DGKVYLN 301

Query: 261 EINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           E+N  PG T  S++P +    G S+  L+  +V  A
Sbjct: 302 ELNTMPGFTQWSMYPLLWENMGLSYSVLIEELVSLA 337


>gi|55709831|gb|AAV58816.1| vanB [Clostridium sp. CCRI-9842]
 gi|56123450|gb|AAV74564.1| D-alanine:D-lactate ligase [Clostridium sp. MLG080-1]
 gi|56123452|gb|AAV74565.1| D-alanine:D-lactate ligase [Ruminococcus sp. MLG080-3]
          Length = 342

 Score =  292 bits (747), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 85/337 (25%), Positives = 147/337 (43%), Gaps = 44/337 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           +A++ GG S E +VS+ S    A+ ++   F    I + ++    L              
Sbjct: 6   VAIIFGGCSEEHDVSVKSAIEIAANIDTEKFDPHYIGITKNGVWKLCKKPCTEWEADSLP 65

Query: 47  --------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
                                  + D+AF VLHG  GEDG +Q +  L  IPY    I +
Sbjct: 66  AILSPDRKTHGLLVMKESEYETRRIDVAFPVLHGKCGEDGAIQGLFVLSGIPYVGCDIQS 125

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           SA  MDK  +  +  + G+ V    ++++        ++ P  +KP + GSS G+  +  
Sbjct: 126 SAACMDKSLAYILTKNAGIAVPEFQMIDKGDKPEAGALTYPVFVKPARSGSSFGVTKVNG 185

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSY 202
            + +   +   ++  +  ++LIEQ + G E+ C VMG+       +V +I +    F  +
Sbjct: 186 TEELNAAI--EAAGQYDGKILIEQAISGCEVGCAVMGNEDDLIVGEVDQIRLSHGIFRIH 243

Query: 203 ---ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
              E +  S N+   +PA IP++    VQ  A   ++ +GCRG++R D         +  
Sbjct: 244 QENEPEKGSENAMITVPADIPVEERNRVQETAKKVYRVLGCRGLARVDLFLQE-DGGIVL 302

Query: 260 LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            E+N  PG T  S +P M A AG +   L+  ++  A
Sbjct: 303 NEVNTMPGFTSYSRYPRMVAAAGITLPALIDSLITLA 339


>gi|193212474|ref|YP_001998427.1| D-alanyl-alanine synthetase A [Chlorobaculum parvum NCIB 8327]
 gi|238692634|sp|B3QMS4|DDL_CHLP8 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|193085951|gb|ACF11227.1| D-alanine/D-alanine ligase [Chlorobaculum parvum NCIB 8327]
          Length = 364

 Score =  292 bits (747), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 91/346 (26%), Positives = 159/346 (45%), Gaps = 57/346 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR----------------SVGL 44
           +A+  GG S E  +S+ S +A AS ++ + + ++ + +DR                 V +
Sbjct: 6   VALFFGGKSVEHIISIISARAVASHIDHSRYDITPLYIDRGGHWHGGACAKRILALDVAV 65

Query: 45  VLAHLK----------------------------PDLAFNVLHGNFGEDGLVQAILELLE 76
           +L +                               D+AF  LHG++GEDG +Q  L+  +
Sbjct: 66  LLRNGGQDEVFERLDEITSFDEGKRFDLTAFFDSIDVAFLTLHGSYGEDGKIQGCLDTFD 125

Query: 77  IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ---------HLISPP 127
           IPY   G+ +SALSMDK  +K   +  GV V   + V      +             + P
Sbjct: 126 IPYAGCGLTSSALSMDKALTKLCAADAGVEVAGFMSVTSADYAADPQAICNAVTERFAFP 185

Query: 128 YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL 187
             +KP   GSS+GI  +     +   L ++ +     ++L+E+ + G E+   V+G+   
Sbjct: 186 VFVKPANLGSSVGISKVHNAAELRPALDKACAL--DAKVLVEETITGREVEVAVLGNDDP 243

Query: 188 --DVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
              V    +P SDFY +E KY   ++  V+PA +P ++   V+  A    +A+GC G++R
Sbjct: 244 IASVPGEIIPGSDFYDFEDKYVKSDAKLVIPADLPGEVSAAVRNAALTVFKALGCSGMAR 303

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
            DF  +  + ++   EIN  PG T +S++P + + +G  F EL+  
Sbjct: 304 VDFFVEHGTNRIILNEINTIPGFTDISMYPMLMSASGVEFDELISR 349


>gi|56123458|gb|AAV74568.1| D-alanine:D-lactate ligase [Clostridium sp. MLG055]
          Length = 342

 Score =  292 bits (747), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 85/337 (25%), Positives = 147/337 (43%), Gaps = 44/337 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           +A++ GG S E +VS+ S    A+ ++   F    I + ++    L              
Sbjct: 6   VAIIFGGCSEEHDVSVKSAIEIAANIDTEKFDPHYIGITKNGVWKLCKKPCTEWEADSLP 65

Query: 47  --------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
                                  + D+AF VLHG  GEDG +Q +  L  IPY    I +
Sbjct: 66  AILSXDRKTHGLLVMKESEYETRRIDVAFPVLHGKCGEDGAIQGLFVLSGIPYVGCDIQS 125

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           SA  MDK  +  +  + G+ V    ++++        ++ P  +KP + GSS G+  +  
Sbjct: 126 SAACMDKSLAYILTKNAGIAVPEFQIIDKGDKPEAGALTYPVFVKPARSGSSFGVTKVNG 185

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSY 202
            + +   +   ++  +  ++LIEQ + G E+ C VMG+       +V +I +    F  +
Sbjct: 186 TEELNAAI--EAAGQYDGKILIEQAISGCEVGCAVMGNEDDLIVGEVDQIRLSHGIFRIH 243

Query: 203 ---ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
              E +  S N+   +PA IP++    VQ  A   ++ +GCRG++R D         +  
Sbjct: 244 QENEPEKGSENAMITVPADIPVEERNRVQETAKKVYRVLGCRGLARVDLFLQE-DGGIVL 302

Query: 260 LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            E+N  PG T  S +P M A AG +   L+  ++  A
Sbjct: 303 NEVNTMPGFTSYSRYPRMVAAAGITLPALIDSLITLA 339


>gi|300866881|ref|ZP_07111556.1| D-alanine--D-alanine ligase [Oscillatoria sp. PCC 6506]
 gi|300335131|emb|CBN56718.1| D-alanine--D-alanine ligase [Oscillatoria sp. PCC 6506]
          Length = 368

 Score =  292 bits (747), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 103/357 (28%), Positives = 166/357 (46%), Gaps = 63/357 (17%)

Query: 1   MAVLMGGISSEREVSLSSGKACASAL----EDAGFKVSQIDVDRSVGL--------VLAH 48
           + +L GG S E EVS+SS +A A A+      + ++V    + +            VL  
Sbjct: 6   IGLLFGGRSGEHEVSISSARAIARAIASDQNASKYEVLPFYIQKDGRWLAGTVPQQVLET 65

Query: 49  LKP-----------------------------------DLAFNVLHGNFGEDGLVQAILE 73
            KP                                   D+ F VLHG  GEDG VQ +L+
Sbjct: 66  GKPLQLEGEEAIANLGENLILTPQSPIAYGQFPRPDIVDVWFPVLHGPNGEDGTVQGLLK 125

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------------Q 121
           L+++P+  SG+L SA+ MDK+  K V +  G+P      V R  + S            +
Sbjct: 126 LMQVPFVGSGVLGSAMGMDKIAMKMVFAQAGLPQVKYTAVTRSQVWSNPCIFPKLCDQIE 185

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
             +  P  +KP   GSS+GI  ++    +   L  ++S++   ++++E  V   EL C V
Sbjct: 186 ENLGYPCFVKPANLGSSVGISKVRSRPELETALDSAASYDR--RIIVEAGVVARELECAV 243

Query: 182 MGDA--SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
           +G+      +      KSDFY YE KY+   +   +PAK+   I  ++Q +A  A  A+ 
Sbjct: 244 LGNDRPQASIVGEITYKSDFYDYETKYAHGQADLFIPAKVSDAIASQIQSMAIEAFLALD 303

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           C G++R DF +   + +V   EIN  PG T  S++P++ A +G SF EL+  +++ A
Sbjct: 304 CAGLARVDFFYVESTGQVLINEINTLPGFTATSMYPQLWAASGISFAELVDRLIQLA 360


>gi|16802896|ref|NP_464381.1| D-alanyl-alanine synthetase A [Listeria monocytogenes EGD-e]
 gi|224503176|ref|ZP_03671483.1| D-alanyl-alanine synthetase A [Listeria monocytogenes FSL R2-561]
 gi|22095558|sp|Q8Y8P1|DDL_LISMO RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|16410258|emb|CAC98933.1| D-alanine--D-alanine ligase [Listeria monocytogenes EGD-e]
          Length = 370

 Score =  292 bits (747), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 87/351 (24%), Positives = 160/351 (45%), Gaps = 60/351 (17%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---LAHLKPD------- 52
           +L GG S+E EVSL +  +  +AL+   F+ + I +      +   L   K D       
Sbjct: 7   LLYGGKSAEHEVSLQTAFSVINALDLEKFEAAPIYITNEGEWIQGPLLSGKLDFVEQLRF 66

Query: 53  ---------------------------------LAFNVLHGNFGEDGLVQAILELLEIPY 79
                                            + F +LHG  GEDG VQ + E+L IPY
Sbjct: 67  SATDTIKLATTESEKSEGEAISPAVLEADGQETVVFPLLHGPNGEDGTVQGLFEVLNIPY 126

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVI 130
             +G+LAS+ +MDK+  K++ +  G+P  P++ V              + + +++ P  +
Sbjct: 127 VGNGVLASSAAMDKIVMKKIFADAGIPQVPAVAVRLIDWKNYQEEMVAEMEEVLTYPVFV 186

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--D 188
           KP   GSS+GI      + +   +  + ++ +  ++++EQ V   E+  GV+G+ +    
Sbjct: 187 KPANLGSSVGISKATNKKELVDAM--TEAFLYDRRVVVEQGVVAREIEMGVLGNDTPVCS 244

Query: 189 VTEIAVPKS---DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
           V    +P+     FY Y+ KY   N+  ++P ++  +I ++++  A  A   +   G+ R
Sbjct: 245 VPGEILPEGAVATFYDYKAKYQDNNTALIIPTEVDPEILEQMKEYAIQAFLGLDASGLVR 304

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +DF       ++F  E+N  PG TP S++P +    G  +  L+  +V+ A
Sbjct: 305 ADFFLTE-DNQLFLNEVNTMPGFTPYSMYPLLWQETGLPYGALIERLVDLA 354


>gi|291562104|emb|CBL40920.1| D-alanine--D-alanine ligase [butyrate-producing bacterium SS3/4]
          Length = 353

 Score =  291 bits (746), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 95/346 (27%), Positives = 157/346 (45%), Gaps = 54/346 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           + VL GG SSE  VS  S +  A+ + +  + V  + +      V               
Sbjct: 6   IVVLFGGQSSEHVVSCMSVQNVAANINEEKYNVILVGITEDGHWVKVDSLSQVKDDTWRE 65

Query: 46  -----------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
                                     +  D+ F VLHG +GEDG VQ ILEL +IPY   
Sbjct: 66  SKAGAVLSPDAKEKCLIVTENGSFEKIPVDVVFPVLHGLYGEDGTVQGILELAKIPYVGC 125

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--------QHLISPPYVIKPLK 134
           G+LASA+SMDK+ +K++VS  G+     + V +  +          +  I  P  +KP  
Sbjct: 126 GVLASAVSMDKLSTKRMVSGLGICQAAYVSVMKAELKDMDAVISKIEKEIPYPVFVKPSN 185

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVT 190
            GSS G+      + +   L +++  ++  ++L+E+ + G E+ CGV GD     +  V 
Sbjct: 186 AGSSRGVTRADNREELITGLKEAA--DNDRRILVEEMIVGREIECGVFGDGDSTKASGVG 243

Query: 191 EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
           EI +  ++FY ++ KY +  S  V+  ++P    + V+  A     A+   G+SR DF  
Sbjct: 244 EI-LAAAEFYDFDAKYYNAESKTVVDPELPDGATERVREAAVKIFNAVDGYGLSRVDFFV 302

Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                 V + EIN  PG T +S++P +    G   R+L+  +++ A
Sbjct: 303 -KADGTVVFNEINTLPGFTAISMYPMLWEARGVDKRQLIDDLIDHA 347


>gi|313634152|gb|EFS00812.1| D-alanine--D-alanine ligase [Listeria seeligeri FSL N1-067]
          Length = 370

 Score =  291 bits (746), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 88/351 (25%), Positives = 158/351 (45%), Gaps = 60/351 (17%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---LAHLKPD------- 52
           +L GG S+E EVSL +  +  +AL    F+   I +      V   L   K D       
Sbjct: 7   LLYGGKSAEHEVSLQTAFSVINALNLDKFEAQPIYITNEGEWVQGPLLSGKLDFVEQLRF 66

Query: 53  ---------------------------------LAFNVLHGNFGEDGLVQAILELLEIPY 79
                                            + F +LHG  GEDG VQ + E+L IPY
Sbjct: 67  IATDKIELALIETEKSSGELISPAVLEADGQETVVFPLLHGPNGEDGTVQGLFEVLNIPY 126

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILV---------NRFTMDSQHLISPPYVI 130
             +G+LAS+ +MDK+  K++ +   +P  P++ V         +    + + ++  P  +
Sbjct: 127 VGNGVLASSAAMDKIVMKKIFADAAIPQVPAVAVRLIDWKNFKDEMIAEMEEVLEYPVFV 186

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--D 188
           KP   GSS+GI      Q +   +  + ++ +  ++++EQ V   E+  GV+G+ +    
Sbjct: 187 KPANLGSSVGISKATNKQELTEAM--TEAFLYDRRVVVEQGVVAREIEMGVLGNDTPICS 244

Query: 189 VTEIAVPKS---DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
           V    +P+     FY Y+ KY   N+T ++P ++  ++  +++  A  A   +   G+ R
Sbjct: 245 VPGEILPEGAVAKFYDYKAKYQDNNTTLIIPTEVEPEVLAQMKEYAIQAFLGLDASGLVR 304

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +DF       ++F  E+N  PG TP S++P +   +G  +  L+  +V+ A
Sbjct: 305 ADFFLT-DDNQLFLNEVNTMPGFTPYSMYPLLWQESGLPYPALIERLVDLA 354


>gi|296138260|ref|YP_003645503.1| D-alanine/D-alanine ligase [Tsukamurella paurometabola DSM 20162]
 gi|296026394|gb|ADG77164.1| D-alanine/D-alanine ligase [Tsukamurella paurometabola DSM 20162]
          Length = 344

 Score =  291 bits (746), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 92/334 (27%), Positives = 149/334 (44%), Gaps = 44/334 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           + VL GG S E  VS+ S +  A  L+   ++   I + R     L              
Sbjct: 6   IGVLFGGASEEHPVSVKSAREVARNLDPDRYEAHWIGITRDGAWRLCAGPENDWESGSVP 65

Query: 49  ----------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
                                 ++ D+   VLHG FGEDG VQ + EL  + Y    + +
Sbjct: 66  AMLSPDRGDHGLLVREAGRYRVVELDVILPVLHGRFGEDGAVQGLCELSGVDYIGCDVPS 125

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           SA+ MDK  +  + S+ G+      +V          ++ P  +KP + GSS G+  +  
Sbjct: 126 SAICMDKSLAYVISSAAGIATPEFRIVAGHEAPDPAELAYPVFVKPARSGSSFGVSKVTA 185

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSY 202
              +P  +   ++  +  ++LIE+ V G E+ C V+GD       +V  IA+    F  +
Sbjct: 186 PDDLPAAI--EAAREYDSKVLIERAVAGSEVGCAVLGDGRGLTVGEVDHIALSHGFFRIH 243

Query: 203 E---LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
           +    +  S NST ++PA IP +    VQ+ A   ++A+GC G++R D    P   +V  
Sbjct: 244 QEDSPETGSENSTPIVPADIPAESRARVQQTARAIYRALGCSGLARVDMFLTP-GGEVVL 302

Query: 260 LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            E+N  PG+T  S +P M + AG S  E+L  +V
Sbjct: 303 NEVNTLPGLTSYSRYPRMMSAAGISLAEVLDRLV 336


>gi|163789889|ref|ZP_02184325.1| D-alanine--D-alanine ligase [Carnobacterium sp. AT7]
 gi|159874829|gb|EDP68897.1| D-alanine--D-alanine ligase [Carnobacterium sp. AT7]
          Length = 366

 Score =  291 bits (746), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 86/348 (24%), Positives = 153/348 (43%), Gaps = 57/348 (16%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---LAHLKPDLA----- 54
           ++ GG S+E ++S+ +  +    +    ++V  I + RS   +   +     D+      
Sbjct: 5   LVYGGKSAEHDISILTAFSIIKEVYYDYYEVQPIYITRSGQWIKGAIVKQASDIVASDAL 64

Query: 55  -----------------------------------FNVLHGNFGEDGLVQAILELLEIPY 79
                                              F VLHG  GEDG VQ + E++ +PY
Sbjct: 65  KLAVSDNVQFAVDDNQQSQGMIIQPSDLKEEDAVIFPVLHGPNGEDGTVQGLFEVISMPY 124

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVI 130
             +G+LASA  MDK+ SKQ+    G+P  P + V +              +  +  P  I
Sbjct: 125 VGAGVLASACGMDKIISKQLFQQAGLPQVPYVPVRKAEWLNDKEIVFKQCEGTLFYPMYI 184

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190
           KP   GSS+GI   +    +   +  +    +  ++++EQ ++  E+   V+G+  + ++
Sbjct: 185 KPANLGSSVGISKAENRDELIAAIELAL--RYDRRVVVEQGIEAREIEVAVLGNDDIHIS 242

Query: 191 EIA--VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                V   DFY YE KY + +    +PA I  D+   ++  A  A QA+   G+SR DF
Sbjct: 243 VPGELVKSVDFYDYESKYINNDVVLQIPALISEDVNARLREYAVRAFQALDGSGLSRCDF 302

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                + +VF  E+N  PG T  S++P +    G ++ +L+  +++ A
Sbjct: 303 FLT-SNDEVFINEVNTMPGFTQFSMYPTLWKNTGLNYGDLVEELIQLA 349


>gi|154250263|ref|YP_001411088.1| D-alanyl-alanine synthetase A [Fervidobacterium nodosum Rt17-B1]
 gi|171769403|sp|A7HNE8|DDL_FERNB RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|154154199|gb|ABS61431.1| D-alanine--D-alanine ligase [Fervidobacterium nodosum Rt17-B1]
          Length = 316

 Score =  291 bits (746), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 101/318 (31%), Positives = 166/318 (52%), Gaps = 23/318 (7%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK-PDLAFNVLH 59
           + VL+GGIS ERE+S+ SGK  A AL + G  V +IDVD +    L+ LK  D  FN+LH
Sbjct: 3   LGVLLGGISREREISIRSGKRIAQALRNMGHVVDEIDVDDNFIYKLSELKKYDALFNILH 62

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS--------CGVPVCPSI 111
           G FGEDG +QAIL+ + IPYT SG+  S ++ DK      V +          V +   +
Sbjct: 63  GTFGEDGKMQAILDSIGIPYTGSGVETSVIAFDKYLCNLFVENTIERYEELSVVKIPNFL 122

Query: 112 LVNRFTMDS------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
           L++    +       +  I  P V+KP K GSS+G  +    + +   L     + + D+
Sbjct: 123 LISSEEFEESKIYMIEEKIGLPCVVKPRKEGSSIGTHICFSKEELLDALKNE--FKNYDE 180

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAV---PKSDFYSYELKYSSLNSTHVLPAKIPLD 222
           +++++Y+ G E+T  V+           +   PK  FY YE KY+   +  ++PA++  +
Sbjct: 181 MIVQEYIKGKEITVSVIDINGTPTVLPILELRPKKLFYDYEAKYTDGMTEFIIPAELDGE 240

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAG 282
             +++       ++++GC+  SR D +        ++LE+N  PGMT +S  P  A   G
Sbjct: 241 TTEKINHAVLKIYKSLGCKHFSRIDGIV--KDGVFYFLEVNTLPGMTELSDLPMSANAFG 298

Query: 283 YSFRELLLWMVEDASCLR 300
            SF EL+  ++++A C +
Sbjct: 299 ISFDELVDLIIKEA-CRK 315


>gi|116511200|ref|YP_808416.1| D-alanyl-alanine synthetase A [Lactococcus lactis subsp. cremoris
           SK11]
 gi|116106854|gb|ABJ71994.1| D-alanine--D-alanine ligase [Lactococcus lactis subsp. cremoris
           SK11]
          Length = 367

 Score =  291 bits (746), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 92/333 (27%), Positives = 151/333 (45%), Gaps = 42/333 (12%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD---------- 52
           +L GG S+EREVS+ S ++   A+  + F V    + +    +      D          
Sbjct: 26  LLYGGRSAEREVSVLSAESVMRAVNYSRFIVKTYFITKGGEFIKTQEFTDTPAEEEKLLT 85

Query: 53  --------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
                               + F VLHG  GEDG +Q  LE+L + Y    IL+++ +MD
Sbjct: 86  NDLAESYPKISPAAIYEKDAVVFPVLHGPMGEDGSIQGFLEILRLAYVGPNILSASSTMD 145

Query: 93  KMRSKQVVSSCGVPVCPSILVNRFTMDSQ------HLISPPYVIKPLKGGSSLGIIVIKK 146
           K+ +K V  + GVP  P +        ++        +  P  +KP   GSS+GI  +  
Sbjct: 146 KLLAKHVFEAVGVPQVPYVAAFADENQAEIAQEVVEKLEFPVFVKPANMGSSVGISKVDD 205

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG---DASLDVTEIAVPKSDFYSYE 203
              +   L  S ++ + ++++IEQ VD  E+ C V+G   D S  +    V    FY Y 
Sbjct: 206 LADLQPAL--SEAYKYDNRVVIEQGVDAREIECAVLGNNSDVSATLPGEVVKDVGFYDYN 263

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            KY        +PAK+  D+ +++Q  A  A++A+   G+SR DF        V+  E+N
Sbjct: 264 SKYIDNKIQMDIPAKVSADLAQKIQEYAKKAYKAVNGAGLSRCDFFVTK-DGNVYLNEVN 322

Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             PG T  S++P +    G S+ +L+  +V+ A
Sbjct: 323 AIPGFTQWSMYPLLWENMGLSYSDLIEKLVDLA 355


>gi|315654076|ref|ZP_07906992.1| D-alanine-D-alanine ligase A [Lactobacillus iners ATCC 55195]
 gi|315488772|gb|EFU78418.1| D-alanine-D-alanine ligase A [Lactobacillus iners ATCC 55195]
          Length = 366

 Score =  291 bits (746), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 90/342 (26%), Positives = 161/342 (47%), Gaps = 49/342 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------DRSVGLVLA----- 47
           + ++ GG SSE EVS+ SG+    A++   + V  + +        D     VL      
Sbjct: 13  VGLIFGGNSSEYEVSIISGRNIYKAIDKEKYDVYPMWITNTGFLASDEDSRKVLEDPSYQ 72

Query: 48  ------------------HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
                               + D+ F ++HGN GEDG +Q +L +L+ P+    +LA+A+
Sbjct: 73  IENPHNVTNISNVIELSNRPEIDVFFPIVHGNLGEDGCLQGLLRILDKPFVGDDVLAAAI 132

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ-----------HLISPPYVIKPLKGGSS 138
           +MDK  +K +    GVPV   I + RF  +               +     +KP   GSS
Sbjct: 133 TMDKELNKIMAQRAGVPVADWISIKRFEYNDAKNEKLSYDYVSQKLGTDLFVKPSNQGSS 192

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVP 195
           +GI  +         L  + ++ + D++L+E+ + G E+   V+G+    V+   +I   
Sbjct: 193 VGISHVTSAADYEKAL--AEAFKYDDKVLVEETIKGTEVETAVLGNDDAIVSGVGQITNA 250

Query: 196 KSDFYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
           +  +YSYE KY+  +++ +  PA +P +I + V+  A   + A  C G++R D +     
Sbjct: 251 QGSWYSYENKYNDNSTSKLQIPADLPAEIVETVRSQALKVYHATECSGLARVDSMLS-SD 309

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            KV + E+N  PG T +S++P++    G S+ EL+  ++  A
Sbjct: 310 NKVIFNELNSLPGFTNISMYPKLFEQVGISYTELITKLLNYA 351


>gi|313833066|gb|EFS70780.1| D-ala D-ala ligase [Propionibacterium acnes HL056PA1]
          Length = 365

 Score =  291 bits (746), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 94/355 (26%), Positives = 148/355 (41%), Gaps = 62/355 (17%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           +AV+ GG+SSE  +S  S     +A++   F VS + +      V               
Sbjct: 6   VAVIFGGMSSEHSISCLSAANVVAAIDAERFDVSGVGISPEGIWVRYGADEILALPGTGQ 65

Query: 47  -------------------------AHLKPD---LAFNVLHGNFGEDGLVQAILELLEIP 78
                                         D   + F VLHG FGEDG +Q +LE+  + 
Sbjct: 66  LPTVEVGDRPLVSVKQMPEGTCIVDTEGNVDAVQVVFPVLHGPFGEDGTIQGLLEMAGVR 125

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL--------ISPPYVI 130
           Y   G+ ASA  MDK  +K ++S  GV V P ++V                  +  P  +
Sbjct: 126 YVGCGVAASANCMDKHLTKMILSEAGVLVGPYVVVRDHEWREDRKAVLKAVSRLEYPVFV 185

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190
           KP +GGSS+GI  +   + +   +    +  H  ++LIEQ + G E+ C V+        
Sbjct: 186 KPARGGSSIGISRVTSPEHLETAI--EMAREHDSKVLIEQGIRGREIECSVIDGRHGAAP 243

Query: 191 EIAVPK-------SDFYSYELKYSSL--NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241
             +VP          FY +E KY S    ++    A +     + VQ++A  A Q +GC 
Sbjct: 244 RASVPGEIVVHDPDGFYDFEAKYLSGEQKASVQAHANLDDATRRRVQKVAIKAFQVLGCE 303

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           G++R D    P    V+  E N  PG T  S FP M   +G ++ +++  ++E A
Sbjct: 304 GLARIDTFVTP-DGAVYVNEPNTMPGFTRSSGFPLMWQASGMTYAQIVSELIELA 357


>gi|313827268|gb|EFS64982.1| D-ala D-ala ligase [Propionibacterium acnes HL063PA2]
          Length = 365

 Score =  291 bits (746), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 94/355 (26%), Positives = 149/355 (41%), Gaps = 62/355 (17%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           +AV+ GG+SSE  +S  S     +A++   F VS + +      V               
Sbjct: 6   VAVIFGGMSSEHSISCLSAANVVAAIDAERFDVSGVGISPEGIWVRYGTDEILALPGTGQ 65

Query: 47  -------------------------AHLKPD---LAFNVLHGNFGEDGLVQAILELLEIP 78
                                         D   + F VLHG FGEDG +Q +LE+  + 
Sbjct: 66  LPTVEVGDRPLVSVKQMPEGTCIVDTEGNVDAVQVVFPVLHGPFGEDGTIQGLLEMAGVR 125

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--------DSQHLISPPYVI 130
           Y   G+ ASA  MDK  +K ++S  GV V P ++V              +   +  P  +
Sbjct: 126 YVGCGVAASANCMDKHLTKMILSEAGVLVGPYVVVRDHEWREDRNAVLKAASRLEYPVFV 185

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190
           KP +GGSS+GI  +   + +   +    +  H  ++LIEQ + G E+ C V+        
Sbjct: 186 KPARGGSSIGISRVTSPEHLETAI--EMAREHDSKVLIEQGIRGREIECSVIDGRHGAAP 243

Query: 191 EIAVPK-------SDFYSYELKYSSL--NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241
             +VP          FY +E KY S    ++    A +     + VQ++A  A Q +GC 
Sbjct: 244 RASVPGEIVVHDPDGFYDFEAKYLSGEQKASVQAHANLDDATRRRVQKVAIKAFQVLGCE 303

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           G++R D     L   V+  E N  PG T  S FP M   +G ++ +++  ++E A
Sbjct: 304 GLARIDTFVT-LDGAVYVNEPNTMPGFTRSSGFPLMWQASGMTYAQIVSELIELA 357


>gi|154267916|gb|ABS72052.1| VanG-like protein [Ruminococcus gauvreauii]
          Length = 348

 Score =  291 bits (746), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 99/342 (28%), Positives = 161/342 (47%), Gaps = 51/342 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------------------- 40
           +AV+ GG S+E  VSL S  +    +    ++V  I + R                    
Sbjct: 6   LAVIFGGNSTEYGVSLQSAFSVLENVNQEKYEVIPIGITRQGSWYRYGGAYGKIPDDTWM 65

Query: 41  ----SVGLVLAHLKP------------------DLAFNVLHGNFGEDGLVQAILELLEIP 78
               ++  V+ H  P                  DLAF VLHG  GEDG VQ +LEL  IP
Sbjct: 66  RDEKNLTPVVVHQNPAVHGILELSVWENRVTQLDLAFPVLHGKNGEDGTVQGLLELAGIP 125

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT----MDSQHLISPPYVIKPLK 134
               G+LASAL MDK R+ ++  + G+ V  ++++ +      +      + P  +KP++
Sbjct: 126 IVGCGVLASALCMDKDRAHRLAGAAGISVPKAVVLQKHQKCRAVVLPEDFTYPLFVKPVR 185

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194
            GSS GI  I  +  +  D   S+++ H D++++E+ VDG E+ C ++G   L V  +  
Sbjct: 186 AGSSCGIAKIYGEGEL--DAAVSAAFCHDDEVIVEENVDGFEVGCAILGMDVLTVGRVDE 243

Query: 195 PK--SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            +    F+ +  KY+  +S   +PA+I     +++Q  A   +Q +GC G +R D    P
Sbjct: 244 IELTGGFFDFTEKYALKHSRIHMPARIDAKTEQKIQETAKNIYQVLGCSGFARVDMFLTP 303

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
               V + E+N  PG T  S +P M    G SF +LL  +++
Sbjct: 304 S-GDVVFNEVNTIPGFTAHSRYPNMMKGIGLSFEQLLERLLD 344


>gi|315281534|ref|ZP_07870142.1| D-alanine--D-alanine ligase [Listeria marthii FSL S4-120]
 gi|313614821|gb|EFR88357.1| D-alanine--D-alanine ligase [Listeria marthii FSL S4-120]
          Length = 370

 Score =  291 bits (746), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 87/351 (24%), Positives = 159/351 (45%), Gaps = 60/351 (17%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---LAHLKPD------- 52
           +L GG S+E EVSL +  +  +AL+   F+   I +      +   L   K D       
Sbjct: 7   LLYGGKSAEHEVSLQTAFSVINALDLEKFEAEPIYITNEGEWIQGPLLTGKLDFVEQLRF 66

Query: 53  ---------------------------------LAFNVLHGNFGEDGLVQAILELLEIPY 79
                                            + F +LHG  GEDG VQ + E+L IPY
Sbjct: 67  TVADTVKLATTESEKSAGEAISPAVLEADGQETVVFPLLHGPNGEDGTVQGLFEVLNIPY 126

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVI 130
             +G+LAS+ +MDK+  K++ +  G+P  P++ V              + + +++ P  +
Sbjct: 127 VGNGVLASSAAMDKIVMKKIFADAGIPQVPAVAVXXXXWKNYQEEMVAEMEEVLTYPVFV 186

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--D 188
           KP   GSS+GI      + +   +  + ++ +  ++++EQ V   E+  GV+G+ +    
Sbjct: 187 KPANLGSSVGISKATNKKELAEAM--TEAFLYDRRVVVEQGVVAREVEMGVLGNDTPVCS 244

Query: 189 VTEIAVPKS---DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
           V    +P+     FY Y+ KY   N+  ++P ++  +I ++++  A  A   +   G+ R
Sbjct: 245 VPGEILPEGAVATFYDYKAKYQDNNTALIIPTEVEPEILEQMKEYAVQAFLGLDASGLVR 304

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +DF       ++F  E+N  PG TP S++P +    G  +  L+  +V+ A
Sbjct: 305 ADFFLTA-DNQLFLNEVNTMPGFTPYSMYPLLWQETGLPYGALIERLVDLA 354


>gi|302524733|ref|ZP_07277075.1| VanA protein [Streptomyces sp. AA4]
 gi|302433628|gb|EFL05444.1| VanA protein [Streptomyces sp. AA4]
          Length = 345

 Score =  291 bits (746), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 97/339 (28%), Positives = 153/339 (45%), Gaps = 44/339 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL---------AHLKP 51
           + V+ GGIS E  VS+ S +  A  LE   ++   + + +     L          H +P
Sbjct: 6   IGVIFGGISEEHPVSVKSAREVAKNLEPETYEPYWVGITKDGSWKLCDGPGEGWEDHGRP 65

Query: 52  -------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
                                    D+   VLHG  GEDG +Q +LEL  IPY    + +
Sbjct: 66  AMLSPDRGVHGLLVEEQGKYEPVRLDVVLPVLHGKLGEDGAMQGLLELSGIPYAGCDVRS 125

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           SAL MDK  +  V  S G+        +          + P  +KP + GSS G+  + +
Sbjct: 126 SALCMDKSLAYLVTDSAGIATPNFWAGSANETVDAGKFTYPVFVKPARSGSSFGVTKVSR 185

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS----LDVTEIAVPKSDFYSY 202
           ++ +P  L  ++ +    ++LIE+ V+G E+ C V+G+ +     +  +I +    F  +
Sbjct: 186 EEDLPSALADAAQF--DSKVLIEEAVEGSEVGCAVLGNGADLIVGEPDQIRLSHGFFKIH 243

Query: 203 E---LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
           +    +  S NST ++PA IP +    VQ  A   ++A+GCRG++R D         V  
Sbjct: 244 QEDNPESGSENSTILVPAAIPAEARARVQATARTIYRALGCRGLARVDLFLLE-DGTVML 302

Query: 260 LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
            E+N  PG+T  S +P M A AG SF E+L  MV  A  
Sbjct: 303 NEVNTFPGLTSYSRYPRMMAAAGLSFAEMLDRMVSLALA 341


>gi|206896178|ref|YP_002247025.1| D-alanine--D-alanine ligase (D-alanylalanine
           synthetase)(D-Ala-D-Ala ligase) [Coprothermobacter
           proteolyticus DSM 5265]
 gi|226729269|sp|B5Y8C8|DDL_COPPD RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|206738795|gb|ACI17873.1| D-alanine--D-alanine ligase (D-alanylalanine
           synthetase)(D-Ala-D-Ala ligase) [Coprothermobacter
           proteolyticus DSM 5265]
          Length = 304

 Score =  291 bits (746), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 98/305 (32%), Positives = 157/305 (51%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59
           + VL GG S ERE+SL SG+  A+ L   G +V  +D    +    L  LKPD  F  LH
Sbjct: 3   IVVLFGGTSPEREISLKSGENIAATLRARGHQVETLDTAVPNFVEQLMQLKPDCVFPALH 62

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---- 115
           G  GEDG +Q +L +L IPY  S + AS ++MDK  +K V    G+P    I V      
Sbjct: 63  GADGEDGKIQGLLSILHIPYVGSDVRASVITMDKYLTKLVALQSGIPTPSFIYVYDPHLV 122

Query: 116 -FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
               D +  +  P+++KP   GS++G+ +++      + L    ++   D+LL+E+++DG
Sbjct: 123 PDYWDVERKLGSPFIVKPCDVGSTIGLSLVRSASEYEVAL--EEAFRFSDRLLLEEFIDG 180

Query: 175 IELTCGV--MGDASLDVTEIAVPKSD-FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
            E+T G+  +G   L +  I V K D  + Y+ KY    + HV    I ++  + +   +
Sbjct: 181 FEVTVGLFRLGGDFLVLPPIYVVKPDRIFDYDTKYKPGGAKHVYDLPISVEARERLTSYS 240

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               + +G  G++R D++        + LEIN  PGMT  S+ P+   +AG  F E L  
Sbjct: 241 KRICKIVGIGGVARLDYIV--KDETPYLLEINSIPGMTAESLVPDEVRHAGRDFGEFLED 298

Query: 292 MVEDA 296
           +++DA
Sbjct: 299 LIKDA 303


>gi|254823877|ref|ZP_05228878.1| D-Ala-D-Ala ligase [Listeria monocytogenes FSL J1-194]
 gi|293593101|gb|EFG00862.1| D-Ala-D-Ala ligase [Listeria monocytogenes FSL J1-194]
          Length = 370

 Score =  291 bits (746), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 86/351 (24%), Positives = 158/351 (45%), Gaps = 60/351 (17%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---LAHLKPD------- 52
           +L GG S+E EVSL +  +  +AL+   F+ + I +      +   L   K D       
Sbjct: 7   LLYGGKSAEHEVSLQTAFSVINALDLEKFEAAPIYITNEGEWIQGPLLSGKLDFVEQLRF 66

Query: 53  ---------------------------------LAFNVLHGNFGEDGLVQAILELLEIPY 79
                                            + F +LHG  GEDG VQ + E+L IPY
Sbjct: 67  SATDTIKLATTESEKSEGEAISPAVLEADGQETVVFPLLHGPNGEDGTVQGLFEVLNIPY 126

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVN---------RFTMDSQHLISPPYVI 130
             +G+LAS+ +MDK+  K++ +  G+   P++ V              + + +++ P  +
Sbjct: 127 VGNGVLASSAAMDKIVMKKIFADAGIQQVPAVAVRLIDWKNYQAEMVAEMEEVLTYPVFV 186

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--D 188
           KP   GSS+GI      + +      + ++ +  ++++EQ V   E+  GV+G+ +    
Sbjct: 187 KPANLGSSVGISKATNKKEL--ADAMTEAFLYDRRVVVEQGVVAREIEMGVLGNDTPVCS 244

Query: 189 VTEIAVPKS---DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
           V    +P+     FY Y+ KY   N+  ++P ++  +I ++++  A  A   +   G+ R
Sbjct: 245 VPGEILPEGAVATFYDYKAKYQDNNTALIIPTEVDPEILEQMKEYAVQAFLGLDASGLVR 304

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +DF       ++F  E+N  PG TP S++P +    G  +  L+  +V+ A
Sbjct: 305 ADFFLTE-DNQLFLNEVNTMPGFTPYSMYPLLWQETGLPYGALIERLVDLA 354


>gi|295130895|ref|YP_003581558.1| D-ala D-ala ligase N-terminal domain protein [Propionibacterium
           acnes SK137]
 gi|291376113|gb|ADD99967.1| D-ala D-ala ligase N-terminal domain protein [Propionibacterium
           acnes SK137]
 gi|313771885|gb|EFS37851.1| D-ala D-ala ligase [Propionibacterium acnes HL074PA1]
 gi|313809610|gb|EFS47346.1| D-ala D-ala ligase [Propionibacterium acnes HL083PA1]
 gi|313829929|gb|EFS67643.1| D-ala D-ala ligase [Propionibacterium acnes HL007PA1]
 gi|314972902|gb|EFT16999.1| D-ala D-ala ligase [Propionibacterium acnes HL053PA1]
 gi|314975674|gb|EFT19769.1| D-ala D-ala ligase [Propionibacterium acnes HL045PA1]
 gi|314984142|gb|EFT28234.1| D-ala D-ala ligase [Propionibacterium acnes HL005PA1]
 gi|315080938|gb|EFT52914.1| D-ala D-ala ligase [Propionibacterium acnes HL078PA1]
 gi|315095733|gb|EFT67709.1| D-ala D-ala ligase [Propionibacterium acnes HL038PA1]
 gi|327330066|gb|EGE71819.1| D-alanine--D-alanine ligase [Propionibacterium acnes HL096PA2]
 gi|327442699|gb|EGE89353.1| D-ala D-ala ligase [Propionibacterium acnes HL043PA1]
 gi|327443902|gb|EGE90556.1| D-ala D-ala ligase [Propionibacterium acnes HL043PA2]
 gi|328761412|gb|EGF74938.1| D-alanine--D-alanine ligase [Propionibacterium acnes HL099PA1]
          Length = 365

 Score =  291 bits (746), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 94/355 (26%), Positives = 148/355 (41%), Gaps = 62/355 (17%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           +AV+ GG+SSE  +S  S     +A++   F VS + +      V               
Sbjct: 6   VAVIFGGMSSEHSISCLSAANVVAAIDAERFDVSGVGISPEGIWVRYGADEILALPGTGQ 65

Query: 47  -------------------------AHLKPD---LAFNVLHGNFGEDGLVQAILELLEIP 78
                                         D   + F VLHG FGEDG +Q +LE+  + 
Sbjct: 66  LPTVEVGDRPLVSVKQMPEGTCIVDTEGNVDAVQVVFPVLHGPFGEDGTIQGLLEMAGVR 125

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH--------LISPPYVI 130
           Y   G+ ASA  MDK  +K ++S  GV V P ++V                  +  P  +
Sbjct: 126 YVGCGVAASANCMDKHLTKMILSEAGVLVGPYVVVRDHEWREDRNAVLKAVSRLEYPVFV 185

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190
           KP +GGSS+GI  +   + +   +    +  H  ++LIEQ + G E+ C V+        
Sbjct: 186 KPARGGSSIGISRVTSPEHLETAI--EMAREHDSKVLIEQGIRGREIECSVIDGRHGAAP 243

Query: 191 EIAVPK-------SDFYSYELKYSSL--NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241
             +VP          FY +E KY S    ++    A +     + VQ++A  A Q +GC 
Sbjct: 244 RASVPGEIVVHDPDGFYDFEAKYLSGEQKASVQAHANLDDATRRRVQKVAIKAFQVLGCE 303

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           G++R D    P    V+  E N  PG T  S FP M   +G ++ +++  ++E A
Sbjct: 304 GLARIDTFVTP-DGAVYVNEPNTMPGFTRSSGFPLMWQASGMTYAQIVSELIELA 357


>gi|16799922|ref|NP_470190.1| D-alanyl-alanine synthetase A [Listeria innocua Clip11262]
 gi|22095561|sp|Q92DG5|DDL_LISIN RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|16413299|emb|CAC96080.1| D-alanine--D-alanine ligase [Listeria innocua Clip11262]
          Length = 370

 Score =  291 bits (746), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 88/351 (25%), Positives = 158/351 (45%), Gaps = 60/351 (17%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---LAHLKPD------- 52
           +L GG S+E EVSL +  +  +AL+   F+   I +      V   L   K D       
Sbjct: 7   LLYGGKSAEHEVSLQTAFSVINALDLEKFEAEPIYITNEGEWVQGPLLSGKLDFVEQLRF 66

Query: 53  ---------------------------------LAFNVLHGNFGEDGLVQAILELLEIPY 79
                                            + F +LHG  GEDG VQ + E+L IPY
Sbjct: 67  SATDRVKLATAESEKSEGEAISPAVLEADGQETVVFPLLHGPNGEDGTVQGLFEVLNIPY 126

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVI 130
             +G+LAS+ +MDK+  K++ +  G+P  P++ V              + + +++ P  +
Sbjct: 127 VGNGVLASSAAMDKIVMKKIFADAGIPQVPAVAVRLIDWKNYQEEMVTEMEEVLTYPVFV 186

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--D 188
           KP   GSS+GI        +   +  + ++ +  ++++EQ V   E+  GV+G+ +    
Sbjct: 187 KPANLGSSVGISKATNKTELIEAM--TEAFLYDRRVVVEQGVVAREIEMGVLGNDTPVCS 244

Query: 189 VTEIAVPKS---DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
           V    +P+     FY Y+ KY   N+  ++P ++  +I ++++  A  A   +   G+ R
Sbjct: 245 VPGEILPEGAVAKFYDYKAKYQDNNTALIIPTEVEPEILEQMKEYAVQAFLGLDASGLVR 304

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +DF       ++F  E+N  PG TP S++P +    G  +  L+  +V+ A
Sbjct: 305 ADFFLTE-DNQLFLNEVNTMPGFTPYSMYPLLWQETGLPYGALIERLVDLA 354


>gi|295691990|ref|YP_003600600.1| D-alanine--D-alanine ligase [Lactobacillus crispatus ST1]
 gi|295030096|emb|CBL49575.1| D-alanine--D-alanine ligase [Lactobacillus crispatus ST1]
          Length = 360

 Score =  291 bits (746), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 90/340 (26%), Positives = 152/340 (44%), Gaps = 49/340 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           + ++ GG SSE EVS+ SG     A++   F V  I +                      
Sbjct: 7   VGLIFGGNSSEYEVSIVSGHNIYKAIDKDKFDVHPIWITNEGYFANEEESFKVLDDPSYQ 66

Query: 52  ----------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
                                 D+ F ++HGN GEDG++Q +  L++ P+    +L +A+
Sbjct: 67  VKNPHKVNNISNLIELENLPEIDVFFPIVHGNLGEDGVLQGLFRLMDKPFVGDDVLGAAV 126

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-----------QHLISPPYVIKPLKGGSS 138
           +MDK  +K +    GVPV   I + RF  D               +     +KP   GSS
Sbjct: 127 TMDKEFTKILAQRVGVPVADWISIKRFEYDDKKNAKLNYEKVAEKLGRDMFVKPSNQGSS 186

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL---DVTEIAVP 195
           +G+  +         L +  ++ + D++L+E+ V G E+   V+G+       V +I   
Sbjct: 187 VGVSHVTNADEYTAALKE--AFKYDDKVLVEKTVPGTEVETAVLGNDKPIVAGVGQITNA 244

Query: 196 KSDFYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
           K  FY+YE KY   +++ +  PA +P +I   V+  A   + A  C G++R D +  P  
Sbjct: 245 KGSFYTYENKYDDNSTSKLQIPADLPQEIIDTVRENARKVYAATECSGMARIDSMLTP-G 303

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            KV   E+N  PG T +S++P++   AG  + EL+  ++E
Sbjct: 304 GKVVLTEVNALPGFTNISMYPKLFEEAGVPYSELITRLIE 343


>gi|213964603|ref|ZP_03392803.1| D-alanine--D-alanine ligase [Corynebacterium amycolatum SK46]
 gi|213952796|gb|EEB64178.1| D-alanine--D-alanine ligase [Corynebacterium amycolatum SK46]
          Length = 367

 Score =  291 bits (746), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 100/357 (28%), Positives = 161/357 (45%), Gaps = 61/357 (17%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50
           +AV+ GG S E  VS  S  A    L++  F+V  I + +     +   +          
Sbjct: 14  VAVIYGGASPEHSVSCVSAGAIMDHLDEDRFRVVPIGITKDGVWTVGTRETDTLRTQGRT 73

Query: 51  ------------------------------------PDLAFNVLHGNFGEDGLVQAILEL 74
                                                D+ F VLHG  GEDG +Q + EL
Sbjct: 74  MPEVIPGEEVALSTSPSRRGEFRFVTGDRAGEVFDTVDVIFPVLHGPHGEDGTIQGLFEL 133

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT---MDSQHLISPPYVIK 131
             I Y   G+LASA  MDK R+K ++ + G+P+   ++++       + +  +  P  +K
Sbjct: 134 SGIAYVGPGVLASAAGMDKERTKNLLQAAGLPIGKQVVLHVGESLSDEDKETLGLPVFVK 193

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM--GDASLDV 189
           P +GGSS+GI  +  D    LD     +  H  ++++E  VDG E+  GV+   D SL V
Sbjct: 194 PARGGSSIGISRV--DDWANLDAAVELAREHDWKVIVEAGVDGAEVEIGVLQRADGSLQV 251

Query: 190 TEIAV------PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           +  ++          FY +E KY     +  +PA++P D+ K +   A  A +A+G  G+
Sbjct: 252 SVPSLLRGTEDSDEGFYGFETKYLDDVVSAQIPAELPKDVLKALDTDARRAFRALGSDGL 311

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           +R DF            E+N  PG TP+S++P+M A +G ++ ELL  ++E A   R
Sbjct: 312 TRVDFFVT--DNGPIINEVNTMPGFTPISMYPQMFAASGVAYEELLSALIERALVAR 366


>gi|314983211|gb|EFT27303.1| D-ala D-ala ligase [Propionibacterium acnes HL110PA3]
 gi|315092432|gb|EFT64408.1| D-ala D-ala ligase [Propionibacterium acnes HL110PA4]
          Length = 365

 Score =  291 bits (746), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 96/355 (27%), Positives = 152/355 (42%), Gaps = 62/355 (17%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------------------- 38
           +AV+ GG+SSE  +S  S     +A++   F VS + +                      
Sbjct: 6   VAVIFGGMSSEHSISCLSAANVVAAIDAERFDVSGVGISPQGIWVRYGADEILALPGTGQ 65

Query: 39  -------DRSVG----------LVLAHLKPD---LAFNVLHGNFGEDGLVQAILELLEIP 78
                  DR +           +V      D   + F VLHG FGEDG +Q +LE+  + 
Sbjct: 66  LPTVEMGDRPLVSVKQMPEGTCIVDTEGNVDAVQVVFPVLHGPFGEDGTIQGLLEMAGVR 125

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--------DSQHLISPPYVI 130
           Y   G+ ASA  MDK  +K ++S  GV V P ++V              +   +  P  +
Sbjct: 126 YVGCGVAASANCMDKHLTKMILSEAGVLVGPYVVVRDHEWREDRNAVLKAASRLEYPLFV 185

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190
           KP +GGSS+GI  +   + +   +    +  H  ++LIEQ + G E+ C V+        
Sbjct: 186 KPARGGSSIGISRVTSPEHLETAI--EMAREHDSKVLIEQGIRGREIECSVIDGRHGAAP 243

Query: 191 EIAVPK-------SDFYSYELKYSSL--NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241
             +VP          FY +E KY S    ++    A +     + VQ +A  A Q +GC 
Sbjct: 244 RASVPGEIVVHDPDGFYDFEAKYLSGEQKASVQAHANLDDVTRRRVQEVAIKAFQVLGCE 303

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           G++R D    P    V+  E N  PG T  S FP M   +G ++ +++  ++E A
Sbjct: 304 GLARIDTFVTP-DGAVYVNEPNTMPGFTRSSGFPLMWQASGMTYAQIVSELIELA 357


>gi|30020677|ref|NP_832308.1| D-alanine--D-alanine ligase [Bacillus cereus ATCC 14579]
 gi|39931057|sp|Q81D33|DDLA_BACCR RecName: Full=D-alanine--D-alanine ligase A; AltName:
           Full=D-Ala-D-Ala ligase A; AltName: Full=D-alanylalanine
           synthetase A
 gi|29896229|gb|AAP09509.1| D-alanine--D-alanine ligase [Bacillus cereus ATCC 14579]
          Length = 301

 Score =  291 bits (746), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 85/301 (28%), Positives = 157/301 (52%), Gaps = 9/301 (2%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62
           +L  G +SE++VS+ +G    + L+   +++  I ++  + L+      D A   LHG +
Sbjct: 2   LLWAGYASEKQVSIMTGNEMIAHLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHGKY 61

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT---MD 119
           GEDG VQ  LE L IPY+ S +L+S++ MDK  SK+++   GV     I + +     +D
Sbjct: 62  GEDGTVQGTLESLGIPYSGSNMLSSSICMDKNISKKILRYEGVETPDWIELTKMEDLNLD 121

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
               +  P V+KP  GGSS+G+ ++     +    +  + +    +++IE+Y+ G E+TC
Sbjct: 122 ELDKLGFPLVVKPNSGGSSVGVKIVYNKNELIS--MLETVFEWDSEVVIEKYIKGDEITC 179

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
            ++    L +  I    ++F+ Y  KY   ++   +  ++P  I + V + +   ++A+ 
Sbjct: 180 SILDGKQLPIVSIR-HAAEFFDYNAKYDDTSTVEEV-IELPAQIKERVNKASLTCYKALK 237

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
           C   +R D +        + +EIN  PGMT  S+ P+ A  AG S+ +LL  ++E +  +
Sbjct: 238 CSVYARVDMMV--KDGIPYVMEINTLPGMTQSSLLPKSAEAAGISYSKLLDMIIETSLKV 295

Query: 300 R 300
           R
Sbjct: 296 R 296


>gi|189462985|ref|ZP_03011770.1| hypothetical protein BACCOP_03687 [Bacteroides coprocola DSM 17136]
 gi|189430267|gb|EDU99251.1| hypothetical protein BACCOP_03687 [Bacteroides coprocola DSM 17136]
          Length = 326

 Score =  291 bits (746), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 97/324 (29%), Positives = 158/324 (48%), Gaps = 33/324 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           +A++ GG SSE +VS+ S +   S ++   + +  +++ +     L              
Sbjct: 5   IAIVAGGDSSEHDVSMRSAEGIYSFIDKDKYTLYIVELTKEKWEALLPDGSRAQIDRNDF 64

Query: 47  ------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
                   +KPD A+  +HG  GE+G++Q   ELL IPY+   +L SA++  K    Q +
Sbjct: 65  SFSHDGQKVKPDFAYITIHGTPGENGILQGYFELLGIPYSTCDVLVSAMTFSKFTLNQYL 124

Query: 101 SSCGVPVCPSILVNRF----TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
              GV V  S+LVN+       D    I  P  IKP   GSS G+  +K  + I   L  
Sbjct: 125 KGFGVRVAESMLVNKHHGISNEDVIEKIGLPCFIKPNASGSSFGVTKVKTAEQIQPAL-- 182

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNST 212
             ++   D ++IE ++DGIEL  G            +TE+ V K++F+ Y  KY+    T
Sbjct: 183 EKAFAESDDVMIEAFMDGIELANGCYKTKDKSVVFPITEV-VSKNEFFDYNAKYN-GEVT 240

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
            + PA++  ++   VQ+L    +  +GC+GI R D++      K+  LEIN  PGMT  S
Sbjct: 241 EITPARLSPELTDRVQKLTSAVYDILGCKGIVRVDYIITE-GEKINMLEINTTPGMTATS 299

Query: 273 IFPEMAAYAGYSFRELLLWMVEDA 296
             P+    AG   +E++  ++ED+
Sbjct: 300 FIPQQVRAAGIDIKEVMTDIIEDS 323


>gi|260437788|ref|ZP_05791604.1| D-alanine--D-alanine ligase A [Butyrivibrio crossotus DSM 2876]
 gi|292809812|gb|EFF69017.1| D-alanine--D-alanine ligase A [Butyrivibrio crossotus DSM 2876]
          Length = 356

 Score =  291 bits (746), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 88/350 (25%), Positives = 156/350 (44%), Gaps = 53/350 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           +AVL GG SSE ++S  S      +++   + V  + + +    +               
Sbjct: 6   VAVLFGGQSSEHDISCISAATVIESIDREKYDVITVGITKDGRWIKTDNVEDIKSGKWRE 65

Query: 49  --------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
                                      + D+ F VLHG +GEDG +Q ILEL  IPY   
Sbjct: 66  GKVTMILSPDRIHKGFVEIEDGKAEVTEVDVVFPVLHGLYGEDGTIQGILELAGIPYVGC 125

Query: 83  GILASALSMDKMRSKQVVSSC-GVPVCPSILVNRFTMDS--------QHLISPPYVIKPL 133
           G++ASA+SMDK+ +K++V     V     + V R+ +          +  +  P  +KP 
Sbjct: 126 GVVASAVSMDKLFTKKIVDGLKDVRQAKYVPVRRYELKEMDKVLDGIEERLPYPVFVKPS 185

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
             GSS G+        +   L  ++   H +++L+E+ + G E+ C V+G + +  + + 
Sbjct: 186 NAGSSKGVSKAGDRAGLEKALRLAA--EHDEKILVEETIVGREIECAVLGTSDVKASGVG 243

Query: 194 V----PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
                  + FY ++ KY++  S  V+  ++P     EV+  A    +A+   G+SR DF 
Sbjct: 244 EILAADSAAFYDFDAKYNNAESKTVINPELPDGKTDEVRNDAVRIFKAVDGFGLSRVDFF 303

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
            +  +  V + EIN  PG T +S++P + A  G   +EL+  ++ +A   
Sbjct: 304 IENGTNDVVFNEINTMPGFTSISMYPMLWADRGIEKKELVDELINEAFTR 353


>gi|254441192|ref|ZP_05054685.1| D-ala D-ala ligase N-terminal domain protein, putative
           [Octadecabacter antarcticus 307]
 gi|198251270|gb|EDY75585.1| D-ala D-ala ligase N-terminal domain protein, putative
           [Octadecabacter antarcticus 307]
          Length = 277

 Score =  291 bits (746), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 118/283 (41%), Positives = 170/283 (60%), Gaps = 16/283 (5%)

Query: 27  EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
             AGF V +ID    +   L  +KPD+ FN LHG + EDG+VQ +LE L IPYTHSG+LA
Sbjct: 2   RTAGFNVVEIDAGVDLVEQLKSVKPDVVFNALHGRWCEDGVVQGVLEWLRIPYTHSGVLA 61

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           SA++MDK ++K++  + G+P   S+L  +  +++ H+++PPYV+KP   GSS+GI ++ +
Sbjct: 62  SAMAMDKQKTKEIYRAHGLPFVSSVLATKTEIEAAHVMTPPYVVKPYDEGSSVGIYLVME 121

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA-------SLDVTEIAVPKSDF 199
               P       + +  D +++E Y  G ELT  V+G         +L VT+I V    +
Sbjct: 122 GDRPP-----ELAADLPDLMMVEVYAPGRELTTAVLGAGAEYSESRALTVTDIVV--DGW 174

Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR--KV 257
           Y Y  KY    STH +PA +P DI +     A  AH  +GCRG+SR+D+ +D       +
Sbjct: 175 YDYAAKYEIGGSTHTIPANLPDDISRACMDYAVRAHDVLGCRGLSRTDYRWDESRGLDGL 234

Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
             LE N QPGMTP S+ PE AA+ G SF +L+ WM+EDASC R
Sbjct: 235 ILLETNTQPGMTPTSLAPEQAAFCGISFPDLMTWMIEDASCNR 277


>gi|158318856|ref|YP_001511364.1| D-alanine--D-alanine ligase [Frankia sp. EAN1pec]
 gi|158114261|gb|ABW16458.1| D-alanine--D-alanine ligase [Frankia sp. EAN1pec]
          Length = 348

 Score =  291 bits (746), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 92/335 (27%), Positives = 147/335 (43%), Gaps = 45/335 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           + ++ GG S E  VS+ S +  A  ++   ++   I + RS    L              
Sbjct: 6   IGIIFGGRSEEHPVSVRSAQEIAKNIDAEKYEPFYIGIARSGAWKLCERPDENWENGSCR 65

Query: 52  --------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
                                     DLA  VLHG  GEDG +Q +LEL  IPY    + 
Sbjct: 66  PAVLSPDRSVHGLLVLEQGRYETISLDLALPVLHGRLGEDGAMQGLLELSGIPYVGCDVQ 125

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145
           +SAL MDK  +  V    G+       V         L++ P  +KP + GSS G+  + 
Sbjct: 126 SSALCMDKSLAYTVARGAGIATPNFWTVTANEKVDADLLTYPVFVKPARSGSSFGVSKVS 185

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYS 201
           + + +   +   ++  +  ++LIE+ V G E+ C ++G+     + +V  I++    F  
Sbjct: 186 RKEELSGAV--DTARQYDSKVLIEEAVVGSEVGCALLGNDLDLTAGEVDRISLSHGFFRI 243

Query: 202 YE---LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
           ++    +  S NST ++PA I  +    VQ  A   ++A+GCRG+SR D        KV 
Sbjct: 244 HQESAPESGSENSTAIVPADISAEARSLVQETAKAVYRALGCRGLSRVDMFLQE-DGKVV 302

Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
             E+N  PGMT  S +P M A AG    E++  +V
Sbjct: 303 LNEVNTLPGMTSYSRYPRMMAAAGLPLAEVIDRLV 337


>gi|160947040|gb|ABX54687.1| D-alanine-D-serine ligase [Enterococcus faecalis]
          Length = 349

 Score =  291 bits (746), Expect = 9e-77,   Method: Composition-based stats.
 Identities = 92/340 (27%), Positives = 158/340 (46%), Gaps = 47/340 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           +A++ GG SSE EVSL S  +    L    F++ +I +D      L              
Sbjct: 7   IAIIFGGQSSEYEVSLKSTVSVLETLSTCNFEIIKIGIDLGGKWYLTTSNNKDIEYDVWQ 66

Query: 47  -----------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                   + +PD+ F +LHG  GEDG +Q + EL+ IPY   G
Sbjct: 67  TDPSLQEIIPCFNNRGFYNKTTNKYFRPDVLFPILHGGTGEDGTLQGVFELMNIPYVGCG 126

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVN-RFTMDSQHLI----SPPYVIKPLKGGSS 138
           +  SA+ MDK    +   S GV   P++++  R   D           P  +KP + GSS
Sbjct: 127 VTPSAICMDKYLLHEFAQSVGVKSAPTLIIRTRNCKDEIDKFIEKNDFPIFVKPNEAGSS 186

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP--K 196
            GI  + +   +   L  + ++ +   ++I++ + G E+ C V+G+  L V E       
Sbjct: 187 KGINKVNEPDKLEDAL--TEAFKYSKSVIIQKAIIGREIGCAVLGNEKLLVGECDEVSLN 244

Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256
           SDF+ Y  KY  +++   +PA I ++   E+++ A L ++ +GC G++R DF     + +
Sbjct: 245 SDFFDYTEKYQMISAKVNIPASISVEFSNEMKKQAQLLYRLLGCSGLARIDFFLS-DNNE 303

Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +   EIN  PG T  S +P+M    G +++E++  ++  A
Sbjct: 304 ILLNEINTLPGFTEHSRYPKMMEAVGVTYKEIITKLINLA 343


>gi|325298578|ref|YP_004258495.1| D-alanine--D-alanine ligase [Bacteroides salanitronis DSM 18170]
 gi|324318131|gb|ADY36022.1| D-alanine--D-alanine ligase [Bacteroides salanitronis DSM 18170]
          Length = 326

 Score =  291 bits (746), Expect = 9e-77,   Method: Composition-based stats.
 Identities = 103/323 (31%), Positives = 163/323 (50%), Gaps = 33/323 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40
           +A++ GG SSE +VS+ S +   S ++   +KV  I++                    D 
Sbjct: 5   IAIVAGGDSSEHDVSMKSAEGIYSFIDKEIYKVYVIELSHKGWNAILEDGSKSTVDKNDF 64

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           S       +KPD A+  +HG  GE+G++Q   ELL IPY+   +L SAL+ +K  + Q +
Sbjct: 65  SFMENGQKIKPDFAYITIHGTPGENGILQGYFELLGIPYSTCDVLVSALTFNKFMTNQYL 124

Query: 101 SSCGVPVCPSILVNR----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
            S GV +  S+LV++       +    I  P  IKP   GSS G+  +K  + I   L  
Sbjct: 125 KSFGVRIAESMLVHKRNGISDEEVIEKIGLPCFIKPNASGSSFGVTKVKTKEQIQPAL-- 182

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNST 212
            +++   D  +IE Y+DGIEL  G          L +TE+ V K++F+ +  KY+    T
Sbjct: 183 QAAFAESDDAMIEAYMDGIELANGCYKTRNKSVVLPITEV-VSKNEFFDFNAKYN-GQVT 240

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
            + PA++  ++   VQ+L    +  +GCRGI R D++      K+  LEIN  PGMT  S
Sbjct: 241 EITPARLSPELTGRVQKLTSAIYDILGCRGIVRVDYIITE-GEKINLLEINATPGMTSTS 299

Query: 273 IFPEMAAYAGYSFRELLLWMVED 295
             P+ A  AG   +E++  ++ED
Sbjct: 300 FIPQQARAAGIDMKEIMTDIIED 322


>gi|314923643|gb|EFS87474.1| D-ala D-ala ligase [Propionibacterium acnes HL001PA1]
 gi|314967081|gb|EFT11180.1| D-ala D-ala ligase [Propionibacterium acnes HL082PA2]
 gi|315092714|gb|EFT64690.1| D-ala D-ala ligase [Propionibacterium acnes HL060PA1]
 gi|315103813|gb|EFT75789.1| D-ala D-ala ligase [Propionibacterium acnes HL050PA2]
 gi|327327215|gb|EGE68991.1| D-alanine--D-alanine ligase [Propionibacterium acnes HL103PA1]
          Length = 365

 Score =  291 bits (746), Expect = 9e-77,   Method: Composition-based stats.
 Identities = 96/355 (27%), Positives = 152/355 (42%), Gaps = 62/355 (17%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------------------- 38
           +AV+ GG+SSE  +S  S     +A++   F VS + +                      
Sbjct: 6   VAVIFGGMSSEHSISCLSAANVVAAIDAERFDVSGVGISPQGIWVRYGADEILALPGTGQ 65

Query: 39  -------DRSVG----------LVLAHLKPD---LAFNVLHGNFGEDGLVQAILELLEIP 78
                  DR +           +V      D   + F VLHG FGEDG +Q +LE+  + 
Sbjct: 66  LPTVEMGDRPLVSVKQMPEGTCIVDTEGNVDAVQVVFPVLHGPFGEDGTIQGLLEMAGVR 125

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--------DSQHLISPPYVI 130
           Y   G+ ASA  MDK  +K ++S  GV V P ++V              +   +  P  +
Sbjct: 126 YVGCGVAASANCMDKHLTKMILSEAGVLVGPYVVVRDHEWREDRNAVLKAASRLEYPLFV 185

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190
           KP +GGSS+GI  +   + +   +    +  H  ++LIEQ + G E+ C V+        
Sbjct: 186 KPARGGSSIGISRVTSPEHLETAI--EMAREHDSKVLIEQGIRGREIECSVIDGRHGAAP 243

Query: 191 EIAVPK-------SDFYSYELKYSSL--NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241
             +VP          FY +E KY S    ++    A +     + VQ +A  A Q +GC 
Sbjct: 244 RASVPGEIVVHDPDGFYDFEAKYLSGEQKASVQAHANLDDVTRRRVQEVAVKAFQVLGCE 303

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           G++R D    P    V+  E N  PG T  S FP M   +G ++ +++  ++E A
Sbjct: 304 GLARIDTFVTP-DGAVYVNEPNTMPGFTRSSGFPLMWQASGMTYAQIVSELIELA 357


>gi|254967017|gb|ACT97544.1| putative D-alanine-D-alanine ligase [uncultured organism]
          Length = 354

 Score =  291 bits (745), Expect = 9e-77,   Method: Composition-based stats.
 Identities = 93/346 (26%), Positives = 153/346 (44%), Gaps = 53/346 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           +AVL GG SSE  VS  S       ++   + +  I +      +L              
Sbjct: 6   IAVLFGGQSSEHVVSCMSAANVIDQIDKDKYDLLLIGITEEGEWILTPSVEEIRNDTWRD 65

Query: 47  ------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
                                     ++ D+ F VLHG  GEDG VQ +LEL  IPY   
Sbjct: 66  GRTHAVLSPDATRKCVIISEGDATKEVRVDVVFPVLHGLRGEDGTVQGLLELARIPYVGC 125

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--------QHLISPPYVIKPLK 134
           G+LASA+SMDK+ +K +V S G+     + V R  +          ++ +S P  +KP  
Sbjct: 126 GVLASAVSMDKLYTKLIVDSLGIRQADYVPVRRSQLQDMNSVIASVENKLSYPVFVKPSN 185

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194
            GSS G+      + +   L +++   H  ++L+E+ + G E+ C V G    +V    V
Sbjct: 186 AGSSRGVNKADNREELVFALNEAA--KHDRKILVEETIIGHEVECAVFGGGLQEVKASGV 243

Query: 195 PK----SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
            +    ++FY ++ KY +  S  V+  ++P    ++V + A    +A+   G+SR DF  
Sbjct: 244 GEIMAAAEFYDFDAKYYNAESKTVVDPELPGHAAEDVSKAAVEIFKAVDGYGLSRVDFFV 303

Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                +V + EIN  PG T +S++P +    G S   L+  ++  A
Sbjct: 304 TDA-GEVVFNEINTLPGFTAISMYPMLWEARGISKSRLVDDLINHA 348


>gi|285019572|ref|YP_003377283.1| D-alanine-D-alanine ligase [Xanthomonas albilineans GPE PC73]
 gi|283474790|emb|CBA17289.1| probable d-alanine-d-alanine ligase protein [Xanthomonas
           albilineans]
          Length = 319

 Score =  291 bits (745), Expect = 9e-77,   Method: Composition-based stats.
 Identities = 98/297 (32%), Positives = 162/297 (54%), Gaps = 7/297 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG SSER+VSL+SG     AL   G     +D   ++   +     D  FN+LHG
Sbjct: 20  VAVLLGGSSSERDVSLTSGANVLDALRSRGVDAQPVDGIAALLERIRAGAVDRVFNILHG 79

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTM 118
             GE+G++Q +L  L++P+T + +L SAL++DK+R+KQV  + G+P      I  +    
Sbjct: 80  GDGENGVLQGLLRALQVPFTGADVLGSALTLDKIRTKQVWIAAGLPTPGFARIAADADLA 139

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   +  P  +KP   GSS+G+  +     +    +++ + ++  +LL+EQ V G E T
Sbjct: 140 AAAAELGYPLFVKPSCEGSSVGVFRVLSAVDLAP--VRAFAADYAGELLMEQMVQGEEYT 197

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
            G++GD +L    I VP  D+Y Y  KY + ++ ++ P  +  +   ++++LA  A  A 
Sbjct: 198 VGILGDIALPSIRI-VPVGDWYDYHAKYIAEDTQYLCP-GLSGEDEVQIRQLALQAFAAA 255

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           GC G  R D + D + R +  +EIN  PGMT  S+ P+ AA+ G     L   ++E 
Sbjct: 256 GCSGWGRVDVMRDRV-RGLQLIEINTAPGMTSHSLVPKAAAHLGIDLASLCWRILEQ 311


>gi|15827889|ref|NP_302152.1| D-alanyl-alanine synthetase A [Mycobacterium leprae TN]
 gi|221230366|ref|YP_002503782.1| D-alanyl-alanine synthetase A [Mycobacterium leprae Br4923]
 gi|18202756|sp|Q9CBS0|DDL_MYCLE RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|13093442|emb|CAC30631.1| D-alanine-D-alanine ligase A [Mycobacterium leprae]
 gi|219933473|emb|CAR71773.1| D-alanine-D-alanine ligase A [Mycobacterium leprae Br4923]
          Length = 384

 Score =  291 bits (745), Expect = 9e-77,   Method: Composition-based stats.
 Identities = 103/364 (28%), Positives = 162/364 (44%), Gaps = 69/364 (18%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD-------- 52
           +AV+ GG S+E  VS  S  +    L+   F V  + +      +L    PD        
Sbjct: 20  VAVVFGGRSNEHAVSCLSAGSILRNLDRQRFDVVAVGITPEGTWMLTDPNPDALAIANRQ 79

Query: 53  -------------------------------------------LAFNVLHGNFGEDGLVQ 69
                                                      + F VLHG +GEDG +Q
Sbjct: 80  LPAVSCESGIELTLPADPRRSGQLVSLSHGAGLGAGEVLTSVDVVFPVLHGPYGEDGTIQ 139

Query: 70  AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQ--HLIS 125
            +LEL  +PY  +G+LASA  MDK  +K++ ++ G+P+    ++   R T+  Q    +S
Sbjct: 140 GLLELARVPYVGAGVLASAAGMDKEFTKKLFAAEGLPLSAYTVLRPLRPTLHRQECERLS 199

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD- 184
            P  +KP +GGSS+GI  +     +P  +    +  H  ++++E  V+G EL CGV+   
Sbjct: 200 LPVFVKPARGGSSIGISRVSSWGQLPSAIAY--ARRHDPKVIVEAAVNGRELECGVLEMP 257

Query: 185 ----ASLDVTEIAV-----PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
               A+  V EI V      +  FY +  KY    +   +PAK+  D+  EV++LA  A 
Sbjct: 258 DGTVAASAVGEIRVAGVSGSEDSFYDFTTKYLDDAAELDVPAKVDDDVADEVRQLAIQAF 317

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           +AI C+G++R DF            EIN  PG T  S++P++ A +   +  LL  MV+ 
Sbjct: 318 RAIDCQGLARVDFFLT--DDGPVINEINTMPGFTMTSMYPKLWAVSSVDYPTLLATMVDT 375

Query: 296 ASCL 299
           A   
Sbjct: 376 ALAR 379


>gi|160878245|ref|YP_001557213.1| D-alanine--D-alanine ligase [Clostridium phytofermentans ISDg]
 gi|160426911|gb|ABX40474.1| D-alanine--D-alanine ligase [Clostridium phytofermentans ISDg]
          Length = 340

 Score =  291 bits (745), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 101/340 (29%), Positives = 164/340 (48%), Gaps = 51/340 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------DRSVGLVLAHLKP 51
           + VL GG+S EREVSLSSG   A+AL + G++V  +D+           S+   +    P
Sbjct: 3   VVVLAGGLSPEREVSLSSGSKIANALMEKGYEVLLLDLYLGIKDVTNIDSLFRKMEDQNP 62

Query: 52  -------------------------------------DLAFNVLHGNFGEDGLVQAILEL 74
                                                D  F  LHG+ GE+G +QA+ ++
Sbjct: 63  YQYQVPKEEPNLTKLKEDSGNGGILIGENVLLLCQYADKVFLALHGSIGENGQLQAMFDI 122

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN-RFTMDSQHLISPPYVIKPL 133
             I YT SG + S L+MDK  SK ++   G+     I+ +     + +  +  P VIKPL
Sbjct: 123 YGISYTGSGYIGSLLAMDKGLSKVIMQKHGIETPDYIVADLTEEQELEKTLMLPCVIKPL 182

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
             GSS+G+ +++  + +   L  +  +   +++LIE+ + G E + G++   +L + EI 
Sbjct: 183 SCGSSVGVSIVRSQEELGKALDYAKKYE--NKVLIEELIVGREFSVGILNHHALPLIEI- 239

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
           +PK+ FY Y  KY +  +T V PA++  +I  ++Q  A   H+ +     SR DFL    
Sbjct: 240 IPKTGFYDYTNKYQAGMATEVCPAQLEDEISIKMQEAALKVHEVLQLGFYSRVDFLL-KE 298

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
               + LE N  PGMTP S+ P+ AA  G S+ +L   ++
Sbjct: 299 DGSFYCLEANTLPGMTPTSLLPQEAAAIGISYSKLCELIL 338


>gi|239917398|ref|YP_002956956.1| D-alanine--D-alanine ligase [Micrococcus luteus NCTC 2665]
 gi|239838605|gb|ACS30402.1| D-alanine--D-alanine ligase [Micrococcus luteus NCTC 2665]
          Length = 379

 Score =  291 bits (745), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 87/356 (24%), Positives = 146/356 (41%), Gaps = 65/356 (18%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL------------- 49
           +L GG SSE  +S  +      A +   + V  + V RS       L             
Sbjct: 19  LLFGGRSSEHPISCVTAAGVLHAADRQRWDVVPVGVARSGLWSHDELDVASFRLDGDALP 78

Query: 50  ------------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPY 79
                                           D+ F +LHG +GEDG +Q + E L +PY
Sbjct: 79  EVPEPKAPVSLRALPDGTVELTAADGSSLGPVDVVFPLLHGPWGEDGTLQGMFESLGLPY 138

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL--------ISPPYVIK 131
              G+LASA+ MDK   K    + G+ V P   +                  ++ P  +K
Sbjct: 139 VGCGVLASAVGMDKHFMKVAFQAAGLQVGPWETITARDWARDPEAALARAGALAYPLFVK 198

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD------A 185
           P + GSS GI  + +   +   + ++  +    ++++E  + G E+ C V+         
Sbjct: 199 PARAGSSFGITRVTEPAGLRAAVEEARRF--DPKVVVEAGIVGREIECAVLDGHGAAAPR 256

Query: 186 SLDVTEIAVPKSD----FYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           +    EI V   +    FY +E KY  +  +    PA++P +  + ++ LA  A +A+  
Sbjct: 257 ASLPGEIVVAHDEGETQFYDFESKYQDTGTTQLSCPAELPEEEIERLRALAIRAFEAVDG 316

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            G+ R DF F P   +    EIN  PG TP+S++P M    G S+ +L+  +++ A
Sbjct: 317 SGLGRCDFFFTP-DGRWVVNEINTMPGFTPISMYPAMWERTGLSYDDLISELLDLA 371


>gi|254827798|ref|ZP_05232485.1| D-Ala-D-Ala ligase [Listeria monocytogenes FSL N3-165]
 gi|254832180|ref|ZP_05236835.1| D-alanyl-alanine synthetase A [Listeria monocytogenes 10403S]
 gi|258600179|gb|EEW13504.1| D-Ala-D-Ala ligase [Listeria monocytogenes FSL N3-165]
          Length = 370

 Score =  291 bits (745), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 87/351 (24%), Positives = 160/351 (45%), Gaps = 60/351 (17%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---LAHLKPD------- 52
           +L GG S+E EVSL +  +  +AL+   F+ + I +      +   L   K D       
Sbjct: 7   LLYGGKSAEHEVSLQTAFSVINALDLEKFEAAPIYITNEGEWIQGPLLSGKLDFVEQLRF 66

Query: 53  ---------------------------------LAFNVLHGNFGEDGLVQAILELLEIPY 79
                                            + F +LHG  GEDG VQ + E+L IPY
Sbjct: 67  SATETVKLAATESEKSEGEAISPAVLEADGQETVVFPLLHGPNGEDGTVQGLFEVLNIPY 126

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVI 130
             +G+LAS+ +MDK+  K++ +  G+P  P++ V              + + +++ P  +
Sbjct: 127 VGNGVLASSAAMDKIVMKKIFADAGIPQVPAVAVRLIDWKNYQEEMVAEMEEVLTYPVFV 186

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--D 188
           KP   GSS+GI      + +   +  + ++ +  ++++EQ V   E+  GV+G+ +    
Sbjct: 187 KPANLGSSVGISKATNKKELVDAM--TEAFLYDRRVVVEQGVVAREIEMGVLGNDTPVCS 244

Query: 189 VTEIAVPKS---DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
           V    +P+     FY Y+ KY   N+  ++P ++  +I ++++  A  A   +   G+ R
Sbjct: 245 VPGEILPEGAVATFYDYKAKYQDNNTALIIPTEVDPEILEQMKEYAIQAFLGLDASGLVR 304

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +DF       ++F  E+N  PG TP S++P +    G  +  L+  +V+ A
Sbjct: 305 ADFFLTE-DNQLFLNEVNTMPGFTPYSMYPLLWQETGLPYGALIERLVDLA 354


>gi|269976776|ref|ZP_06183751.1| D-alanine--D-alanine ligase [Mobiluncus mulieris 28-1]
 gi|269934973|gb|EEZ91532.1| D-alanine--D-alanine ligase [Mobiluncus mulieris 28-1]
          Length = 374

 Score =  291 bits (745), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 87/360 (24%), Positives = 155/360 (43%), Gaps = 66/360 (18%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           +AV+ GG S E  +S ++       ++   F+   I + R    VL              
Sbjct: 9   VAVIFGGSSGEHSISCATAAGVLEHIDRNRFEPVPIGITRGGAWVLMPDEVEALRLQDGQ 68

Query: 47  ---------------------------------AHLKPDLAFNVLHGNFGEDGLVQAILE 73
                                               + D+   +LHG +GEDG +Q + E
Sbjct: 69  GAEVTDNGTFVALVPQNQHLFFWDTRVADSPIRDLGRIDVVMPLLHGPYGEDGTIQGLCE 128

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH--------LIS 125
           ++ +PYT  G+ ASAL MDK  +KQV+   G+PV    ++  +    +            
Sbjct: 129 MVGVPYTGCGVTASALCMDKGYTKQVLERGGIPVGRFHVITDYAWRHRESAVPAEVLDFG 188

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGD 184
            P  +KP + GSSLG+  ++  +     ++  ++  H  ++++E  V G  E+ C V+  
Sbjct: 189 LPVFVKPSRAGSSLGVSRVEAWEEFEAAVV--AARRHDPKVIVEAGVVGAREVECAVLEG 246

Query: 185 ASLDVTEIAVPKS-------DFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQ 236
                   A+P           Y +E KY + ++  + +PA+IP  + K +   A  A +
Sbjct: 247 RDGAAPRTAIPGEVVMKQTPGMYDFESKYFAQDAVSLSIPAQIPELVAKRICDYARQAFE 306

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            +   G++R DF +   + ++   EIN  PGMTP S+FP M  + G  +++L+  ++E A
Sbjct: 307 LVSGEGLARVDFFYVEETGRLILNEINTMPGMTPFSLFPGMWEHMGMPYQDLVTELIEIA 366


>gi|289425456|ref|ZP_06427233.1| D-ala D-ala ligase N-terminal domain protein [Propionibacterium
           acnes SK187]
 gi|289154434|gb|EFD03122.1| D-ala D-ala ligase N-terminal domain protein [Propionibacterium
           acnes SK187]
 gi|313764084|gb|EFS35448.1| D-ala D-ala ligase [Propionibacterium acnes HL013PA1]
 gi|313792389|gb|EFS40484.1| D-ala D-ala ligase [Propionibacterium acnes HL110PA1]
 gi|313801475|gb|EFS42724.1| D-ala D-ala ligase [Propionibacterium acnes HL110PA2]
 gi|313816433|gb|EFS54147.1| D-ala D-ala ligase [Propionibacterium acnes HL059PA1]
 gi|313838238|gb|EFS75952.1| D-ala D-ala ligase [Propionibacterium acnes HL086PA1]
 gi|314914945|gb|EFS78776.1| D-ala D-ala ligase [Propionibacterium acnes HL005PA4]
 gi|314917830|gb|EFS81661.1| D-ala D-ala ligase [Propionibacterium acnes HL050PA1]
 gi|314919720|gb|EFS83551.1| D-ala D-ala ligase [Propionibacterium acnes HL050PA3]
 gi|314930037|gb|EFS93868.1| D-ala D-ala ligase [Propionibacterium acnes HL067PA1]
 gi|314956384|gb|EFT00696.1| D-ala D-ala ligase [Propionibacterium acnes HL027PA1]
 gi|314957256|gb|EFT01359.1| D-ala D-ala ligase [Propionibacterium acnes HL002PA1]
 gi|314963173|gb|EFT07273.1| D-ala D-ala ligase [Propionibacterium acnes HL082PA1]
 gi|314967705|gb|EFT11804.1| D-ala D-ala ligase [Propionibacterium acnes HL037PA1]
 gi|315078236|gb|EFT50279.1| D-ala D-ala ligase [Propionibacterium acnes HL053PA2]
 gi|315098176|gb|EFT70152.1| D-ala D-ala ligase [Propionibacterium acnes HL059PA2]
 gi|315101671|gb|EFT73647.1| D-ala D-ala ligase [Propionibacterium acnes HL046PA1]
 gi|315109490|gb|EFT81466.1| D-ala D-ala ligase [Propionibacterium acnes HL030PA2]
 gi|327452374|gb|EGE99028.1| D-ala D-ala ligase [Propionibacterium acnes HL087PA3]
 gi|327452749|gb|EGE99403.1| D-ala D-ala ligase [Propionibacterium acnes HL083PA2]
 gi|327453502|gb|EGF00157.1| D-ala D-ala ligase [Propionibacterium acnes HL092PA1]
 gi|328752616|gb|EGF66232.1| D-ala D-ala ligase [Propionibacterium acnes HL025PA2]
 gi|328753831|gb|EGF67447.1| D-ala D-ala ligase [Propionibacterium acnes HL087PA1]
          Length = 365

 Score =  291 bits (745), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 94/355 (26%), Positives = 149/355 (41%), Gaps = 62/355 (17%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           +AV+ GG+SSE  +S  S     +A++   F VS + +      V               
Sbjct: 6   VAVIFGGMSSEHSISCLSAANVVAAIDAERFDVSGVGISPEGIWVRYGADEILALPGTGQ 65

Query: 47  -------------------------AHLKPD---LAFNVLHGNFGEDGLVQAILELLEIP 78
                                         D   + F VLHG FGEDG +Q +LE+  + 
Sbjct: 66  LPTVEVGDRPLVSVKQMPEGTCIVDTEGNVDAVQVVFPVLHGPFGEDGTIQGLLEMAGVR 125

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--------DSQHLISPPYVI 130
           Y   G+ ASA  MDK  +K ++S  GV V P ++V              +   +  P  +
Sbjct: 126 YVGCGVAASANCMDKHLTKMILSEAGVLVGPYVVVRDHEWREDRNAVLKAASRLEYPVFV 185

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190
           KP +GGSS+GI  +   + +   +    +  H  ++LIEQ + G E+ C V+        
Sbjct: 186 KPARGGSSIGISRVTSPEHLETAI--EMAREHDSKVLIEQGIRGREIECSVIDGRHGAAP 243

Query: 191 EIAVPK-------SDFYSYELKYSSL--NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241
             +VP          FY +E KY S    ++    A +     + VQ++A  A Q +GC 
Sbjct: 244 RASVPGEIVVHDPDGFYDFEAKYLSGEQKASVQAHANLDDATRRRVQKVAIKAFQVLGCE 303

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           G++R D     L   V+  E N  PG T  S FP M   +G ++ +++  ++E A
Sbjct: 304 GLARIDTFVT-LDGAVYVNEPNTMPGFTRSSGFPLMWQASGMTYAQIVSELIELA 357


>gi|226310174|ref|YP_002770068.1| ligase [Brevibacillus brevis NBRC 100599]
 gi|226093122|dbj|BAH41564.1| ligase [Brevibacillus brevis NBRC 100599]
          Length = 350

 Score =  291 bits (745), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 94/344 (27%), Positives = 153/344 (44%), Gaps = 51/344 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           +A+L GG SSE EVSL S  +   +L    ++V  + + R    +               
Sbjct: 6   VAILFGGCSSEYEVSLKSTSSVLESLCLEKYEVILLGITREGQWLRYTGNIESIRNDSWH 65

Query: 46  --------------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPY 79
                                     +   K D+ F +LHG  GEDG VQ +LEL  IP+
Sbjct: 66  QSEKCVPAFLSPCRQVRGIVTQENGAMTVTKVDVVFPILHGKNGEDGTVQGLLELAGIPF 125

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT-----MDSQHLISPPYVIKPLK 134
                L+SA+ MDK  +  +    G+    S+ V   T       +   +  P  +KP K
Sbjct: 126 VGCHTLSSAICMDKDIAHTLAEGSGIKTPRSVAVYPNTDLATVQAATEPLGFPLYVKPAK 185

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194
            GSS+GI        +   +   ++  H D+++IE+ + G E+ C V+G+  + V E+  
Sbjct: 186 AGSSIGITKAYSLSELFFGI--ENALQHDDKVVIEENITGFEVGCAVLGNREVIVGEVDE 243

Query: 195 PK--SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            +    F+ Y  KYS   +   +PA+I  ++  ++++ A   +Q  GCRG +R D    P
Sbjct: 244 IELLQGFFDYTEKYSLETAHIHVPARIDEELAHKIKQTATHLYQVFGCRGFARVDMFVTP 303

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
               + + E+N  PG T  S +P M   AG S++ELL  ++  A
Sbjct: 304 -DGDIVFNEVNTIPGFTSKSRYPSMLRAAGISYKELLDTLIMLA 346


>gi|241205059|ref|YP_002976155.1| D-alanyl-alanine synthetase A [Rhizobium leguminosarum bv. trifolii
           WSM1325]
 gi|240858949|gb|ACS56616.1| D-alanine/D-alanine ligase [Rhizobium leguminosarum bv. trifolii
           WSM1325]
          Length = 358

 Score =  291 bits (745), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 93/347 (26%), Positives = 160/347 (46%), Gaps = 51/347 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           +AVL GG S+E EVS+ S      AL+   +    + + R    +L++            
Sbjct: 10  IAVLFGGRSAEHEVSVLSATNVMGALKPEKYDAVPVFITREGQWLLSNFEDGILATPSSG 69

Query: 50  --------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                     + D+ F VLHG  GEDG VQ   E+  +P    G
Sbjct: 70  TEICLVPGGHGRMLAMPAHGAPHELARIDILFPVLHGPHGEDGSVQGATEVARVPLAGCG 129

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSL 139
           IL SA ++DK  +K+++ + G+PV  ++ ++     S    +  +  P  IKP + GSS+
Sbjct: 130 ILGSAAALDKDIAKRLLRAAGLPVARAVTIHEGAAPSLAALEGELGLPLFIKPARQGSSV 189

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD-----VTEIAV 194
           G+  +   Q     L  + ++ H   LL E++V G E+   V+ D + +       EI  
Sbjct: 190 GVAKVHASQEFAPAL--TEAFRHDRTLLAEEFVRGREIEFSVLEDTAGELFVSRPGEIVP 247

Query: 195 PKS-DFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            +S  FYSY+ KY     +   +PA++P +I   ++ +A  A +A+GC G++R DF    
Sbjct: 248 AESHGFYSYDAKYIDEKGAVLKVPAELPQEIETAMRDVASKAFRAVGCDGMARIDFFLT- 306

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
              +    EIN  PG T +S++ +  A +G ++ E++  +V+     
Sbjct: 307 DDMQFLVNEINTIPGFTDISMYSKAMAASGVTYAEIIDRLVDHGLAR 353


>gi|228998192|ref|ZP_04157790.1| D-alanine--D-alanine ligase [Bacillus mycoides Rock3-17]
 gi|228761584|gb|EEM10532.1| D-alanine--D-alanine ligase [Bacillus mycoides Rock3-17]
          Length = 304

 Score =  291 bits (745), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 91/303 (30%), Positives = 159/303 (52%), Gaps = 9/303 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGG+SSE++VSL +G+   + L+ + ++V  I ++    LV      D+A   LHG
Sbjct: 3   VGVIMGGVSSEKQVSLMTGEEMIAHLDKSKYEVVPIKLNDKKELVEKVRNLDIALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFT 117
            +GEDG +Q  LE L +PYT S +L+S + MDK  SK+++    +     I +       
Sbjct: 63  EYGEDGTIQGTLETLGVPYTGSVMLSSGICMDKNMSKKMIRYEDIQTPDWIHLSNTEELQ 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
           +D    +  P V+KP  GGSS+G+ ++    S+   L     W    +++IE+Y+ G E+
Sbjct: 123 LDEIDKMGYPLVVKPNSGGSSVGVKIVYDKDSLLSSLEDVFKW--DSEIVIEKYIKGEEI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC ++    L +  I    ++F+ Y  KY  + +   +  ++P   Y+ V   A   ++A
Sbjct: 181 TCSILDGKLLPIISIQ-HTAEFFDYHAKYDDIATIEEV-VELPATTYERVAEAAMTCYRA 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           + C   +R D +        + +E+N  PGMT  S+ P+ A  AG S+ +LL  ++E + 
Sbjct: 239 LKCSVYARVDIII--KDEIPYVMEVNTLPGMTKNSLLPKSAHAAGISYSKLLDMIIETSL 296

Query: 298 CLR 300
            +R
Sbjct: 297 QVR 299


>gi|190359179|sp|Q031X8|DDL_LACLS RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
          Length = 349

 Score =  291 bits (745), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 92/333 (27%), Positives = 151/333 (45%), Gaps = 42/333 (12%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD---------- 52
           +L GG S+EREVS+ S ++   A+  + F V    + +    +      D          
Sbjct: 8   LLYGGRSAEREVSVLSAESVMRAVNYSRFIVKTYFITKGGEFIKTQEFTDTPAEEEKLLT 67

Query: 53  --------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
                               + F VLHG  GEDG +Q  LE+L + Y    IL+++ +MD
Sbjct: 68  NDLAESYPKISPAAIYEKDAVVFPVLHGPMGEDGSIQGFLEILRLAYVGPNILSASSTMD 127

Query: 93  KMRSKQVVSSCGVPVCPSILVNRFTMDSQ------HLISPPYVIKPLKGGSSLGIIVIKK 146
           K+ +K V  + GVP  P +        ++        +  P  +KP   GSS+GI  +  
Sbjct: 128 KLLAKHVFEAVGVPQVPYVAAFADENQAEIAQEVVEKLEFPVFVKPANMGSSVGISKVDD 187

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG---DASLDVTEIAVPKSDFYSYE 203
              +   L  S ++ + ++++IEQ VD  E+ C V+G   D S  +    V    FY Y 
Sbjct: 188 LADLQPAL--SEAYKYDNRVVIEQGVDAREIECAVLGNNSDVSATLPGEVVKDVGFYDYN 245

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            KY        +PAK+  D+ +++Q  A  A++A+   G+SR DF        V+  E+N
Sbjct: 246 SKYIDNKIQMDIPAKVSADLAQKIQEYAKKAYKAVNGAGLSRCDFFVTK-DGNVYLNEVN 304

Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             PG T  S++P +    G S+ +L+  +V+ A
Sbjct: 305 AIPGFTQWSMYPLLWENMGLSYSDLIEKLVDLA 337


>gi|162448834|ref|YP_001611201.1| D-alanine-D-alanine ligase [Sorangium cellulosum 'So ce 56']
 gi|161159416|emb|CAN90721.1| D-alanine-D-alanine ligase [Sorangium cellulosum 'So ce 56']
          Length = 380

 Score =  290 bits (744), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 102/361 (28%), Positives = 159/361 (44%), Gaps = 68/361 (18%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           +AVL GG S+E E+SL S +    AL+   F+   I +D+S   +L              
Sbjct: 9   VAVLFGGRSAEHEISLLSARFVVEALDRDRFEPVLIGIDKSGRWLLQEEALLLGAARDPR 68

Query: 47  ------------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLE 76
                                         A    D+ F VLHG  GEDG VQ +LEL  
Sbjct: 69  LARLNEAMPEIALDAHPGPAGEATLTVPGGARAPIDVVFPVLHGPTGEDGCVQGLLELAG 128

Query: 77  IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH-------------- 122
           +PY  SG+L SA+ MDK   K+++    +P+ P + + R   D                 
Sbjct: 129 VPYVGSGVLGSAVGMDKDVMKRLLREAEIPIVPHVTLRRAAWDRDRGACIDQIAALSAPG 188

Query: 123 -LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCG 180
                P  +KP   GSS+G+  +K    I   +    ++    +++ EQ ++G  E+ C 
Sbjct: 189 SAGFGPIFVKPANLGSSVGVRRVKARSEIEAAV--EHAFEFDLKIVCEQGIEGVREIECS 246

Query: 181 VMGDASLDVT---EIAVPKSD-FYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
           V+GD     +   EI V  +D FYSY  KY  +  +T  +PA +       VQ +A  A 
Sbjct: 247 VLGDDDPIASVPGEIVVGHADGFYSYAAKYIDADGATIRIPADLSPAEANAVQLVALRAF 306

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           +A+   G++R D    P  R ++  EIN  PG T +S++P++   +G   REL+  ++  
Sbjct: 307 RALEASGMARVDLFLSP-DRALYVNEINTIPGFTAISMYPKLWEASGIPARELIERLIAL 365

Query: 296 A 296
           A
Sbjct: 366 A 366


>gi|13471742|ref|NP_103309.1| D-alanyl-alanine synthetase A [Mesorhizobium loti MAFF303099]
 gi|39931184|sp|Q98JS0|DDLA_RHILO RecName: Full=D-alanine--D-alanine ligase A; AltName:
           Full=D-Ala-D-Ala ligase A; AltName: Full=D-alanylalanine
           synthetase A
 gi|14022486|dbj|BAB49095.1| D-alanine-D-alanine ligase A [Mesorhizobium loti MAFF303099]
          Length = 357

 Score =  290 bits (744), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 95/350 (27%), Positives = 152/350 (43%), Gaps = 54/350 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           +A+L GG S+E +VS  S      A++   ++V  I + R     L              
Sbjct: 7   VAILYGGRSAEHDVSRLSAANVLKAIDRTRYEVVPIAISRDGRWRLQPSSEAGADGAGAQ 66

Query: 49  ----------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYT 80
                                          D+ F VLHG FGEDG VQ   E+ ++ Y 
Sbjct: 67  VPEDGVEVALLPGGKGRLVALTKNGEQPDPVDVVFPVLHGPFGEDGSVQGYAEVADVAYV 126

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT----MDSQHLISPPYVIKPLKGG 136
             GILASA +MDK  +K+++   G+ V  S+ V +       +    +  P+  KP + G
Sbjct: 127 GCGILASAAAMDKDVAKRLLREAGLAVARSVTVLKGDVGSFQEIAGALGLPFFAKPARQG 186

Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG--DASLDVTE--- 191
           SS G+  +         +   ++  +  + LIE++VDG E+ C V+   D SL V+    
Sbjct: 187 SSFGVSKVHDRDGFEQAV--ETALRYDSKALIEEFVDGREIECSVLERADGSLTVSPPGE 244

Query: 192 -IAVPKSDFYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
            I   K  FY+YE KY       V  PA +P D+      +A  A +A+GC  ++R DF 
Sbjct: 245 IIPADKHGFYTYEAKYFDAEGAVVKVPADVPADVVARTSEMAARAFRALGCEAMARVDFF 304

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
                  +   E+N  PG T +S++ +  A AG  + +++  ++E A   
Sbjct: 305 LRA-DGSLLVNEVNTLPGFTDISMYAKALAAAGIGYSKVIDVLIEHALAR 353


>gi|116252548|ref|YP_768386.1| D-alanyl-alanine synthetase A [Rhizobium leguminosarum bv. viciae
           3841]
 gi|115257196|emb|CAK08291.1| putative D-alanine--D-alanine ligase A [Rhizobium leguminosarum bv.
           viciae 3841]
          Length = 358

 Score =  290 bits (744), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 95/350 (27%), Positives = 165/350 (47%), Gaps = 53/350 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           +AVL GG S+E +VS+ S      AL+   +    + + R    +L+             
Sbjct: 10  IAVLFGGRSAEHDVSVLSATNVMGALKPEKYDAVPVFITREGQWLLSSFEDGILATPSSG 69

Query: 50  --------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                     K D+ F VLHG +GEDG VQ   E+  +P    G
Sbjct: 70  TEICLVPGGRGRMLAIPAHGAPHDLAKVDILFPVLHGQYGEDGSVQGAAEVARVPLAGCG 129

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSL 139
           IL SA ++DK  +K+++ + G+PV  ++ ++   + S    +  +  P  IKP + GSS+
Sbjct: 130 ILGSAAALDKDIAKRLLRAAGLPVARAVTIHEGAVPSLAALEGELGLPLFIKPARQGSSV 189

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD-----VTEIAV 194
           G+  +   Q +   L  + ++ H   LL E++V G E+   V+ DA+ +       EI  
Sbjct: 190 GVAKVHASQEVAPAL--AEAFRHDRTLLAEEFVRGREIEFSVLEDAAGELFVSRPGEIVP 247

Query: 195 PKS-DFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            +S  FYSY+ KY     +   +PA++P ++   ++ +A  A +A+GC G++R DF    
Sbjct: 248 AESHGFYSYDAKYIDEKGAALKVPAELPQEVETAMRDVAAKAFRAVGCDGMARIDFFLT- 306

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED--ASCLR 300
              +    EIN  PG T +S++ +  A +G ++ E++  +V+   A   R
Sbjct: 307 DDMQFLVNEINTIPGFTDISMYSKAMAASGVTYAEIIDRLVDHGMARARR 356


>gi|210634764|ref|ZP_03298292.1| hypothetical protein COLSTE_02219 [Collinsella stercoris DSM 13279]
 gi|210158704|gb|EEA89675.1| hypothetical protein COLSTE_02219 [Collinsella stercoris DSM 13279]
          Length = 319

 Score =  290 bits (744), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 119/307 (38%), Positives = 169/307 (55%), Gaps = 15/307 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGF-KVSQIDVD-RSVGLVLAHLKPDLAFNVL 58
           +AVL GG S ERE+SL+SGK    AL +AG+  V  ID    +    +     D AF  L
Sbjct: 11  IAVLAGGTSDEREISLASGKNVVHALTEAGYGSVELIDPAAPTFLERMTGDGWDAAFIAL 70

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
           HG  GEDG +Q +LE L IPYT S  LAS ++MDK  SK +    G+PV PS+   R  M
Sbjct: 71  HGIGGEDGRIQHVLEFLGIPYTASSPLASGIAMDKDLSKLLYRRAGLPVAPSVTFGRADM 130

Query: 119 ----DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
               +   ++     +KP+  GSS GI + K    +        ++ HG+++++E+ V G
Sbjct: 131 LPLEEIVAVVGEQSFVKPVVNGSSYGISLAKDPSEL--ANAIEVAFEHGEKVMVEKRVFG 188

Query: 175 IELTCGVMGDA----SLDVTEIAVPK-SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
            E +   +GD     +L V EI VP+ S+FY  E+KY+     H +PA +P D+Y +VQ 
Sbjct: 189 TECSVAAVGDGETLRALPVVEILVPEQSEFYDLEVKYADPKDLHRIPACLPEDVYAQVQE 248

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           +A  AH+A+G  GISR+D +          LE N  PGMTP S+ P+ A +AG  F EL 
Sbjct: 249 IACRAHEALGLYGISRTDVIVTEDG--PVILETNNIPGMTPESLVPDEARHAGIPFSELC 306

Query: 290 LWMVEDA 296
             +V+ A
Sbjct: 307 AELVDLA 313


>gi|167760757|ref|ZP_02432884.1| hypothetical protein CLOSCI_03142 [Clostridium scindens ATCC 35704]
 gi|167661644|gb|EDS05774.1| hypothetical protein CLOSCI_03142 [Clostridium scindens ATCC 35704]
          Length = 356

 Score =  290 bits (744), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 101/352 (28%), Positives = 157/352 (44%), Gaps = 53/352 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------------------- 38
           + VL GG+S ER+VSL SG      L + G K   +DV                      
Sbjct: 3   IIVLAGGLSPERDVSLISGAGICRTLREKGHKAYLLDVFFGLPYDPDKLEEVFDLPGGGL 62

Query: 39  --------DRSVGLVLAHLKPD------------------LAFNVLHGNFGEDGLVQAIL 72
                          L   +PD                  + F  LHG+ GE+G +QA  
Sbjct: 63  EIAEGIKTTTPDLEALRASRPDQSDCYLGPNVIDLCRIADITFMGLHGSVGENGKLQATF 122

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ-HLISP--PYV 129
           ++L I YT       ALSMDK+ +KQ+    GVP      +NR T D+    +    P V
Sbjct: 123 DILGIKYTGPNSFGCALSMDKLVAKQIFKRSGVPTPRGTSLNRNTKDTPLEKLGYYLPLV 182

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           IKP  GGSS+G+ ++  ++     +  S   NH D+++IE Y+ G E  C ++   +L +
Sbjct: 183 IKPCSGGSSIGVYIVHTEEEYREAIRCSFDVNHEDEVVIEPYIKGREYACSIIAGKALPL 242

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
            EI +PK   ++YE KY    +  + P   +      ++QR    A + +     +R+DF
Sbjct: 243 IEI-IPKDGIFNYENKYQDGGAQELCPPVSLDDKTQAKIQRAGEKAFRVLHMDVYARADF 301

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           + D    K + LE+N  PGMTP S+ P+ A   G  + +L   ++E++   R
Sbjct: 302 IVDETDGKFYCLEMNGLPGMTPASLIPKSARAIGVDYGDLCELIIEESMKTR 353


>gi|325912205|ref|ZP_08174602.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus iners
           UPII 143-D]
 gi|325475864|gb|EGC79033.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus iners
           UPII 143-D]
          Length = 360

 Score =  290 bits (744), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 90/342 (26%), Positives = 161/342 (47%), Gaps = 49/342 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------DRSVGLVLA----- 47
           + ++ GG SSE EVS+ SG+    A++   + V  + +        D     VL      
Sbjct: 7   VGLIFGGNSSEYEVSIISGRNIYKAIDKEKYDVYPMWITNTGFLASDADSRKVLEDPTYQ 66

Query: 48  ------------------HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
                               + D+ F ++HGN GEDG +Q +L +L+ P+    +LA+A+
Sbjct: 67  IENPHTVTNISNVIELSNRPEIDVFFPIVHGNLGEDGCLQGLLRILDKPFVGDDVLAAAI 126

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ-----------HLISPPYVIKPLKGGSS 138
           +MDK  +K +    GVPV   I + RF  +               +     +KP   GSS
Sbjct: 127 TMDKELNKIMAQRAGVPVADWISIKRFEYNDAKNEKLSYDYVSQQLGTDLFVKPSNQGSS 186

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVP 195
           +GI  +         L  + ++ + D++L+E+ + G E+   V+G+    V+   +I   
Sbjct: 187 VGISHVTSAADYEKAL--AEAFKYDDKVLVEETIKGTEVETAVLGNDDAIVSGVGQITNA 244

Query: 196 KSDFYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
           +  +YSYE KY+  +++ +  PA +P +I + V+  A   + A  C G++R D +     
Sbjct: 245 QGSWYSYENKYNDNSTSKLQIPADLPAEIVETVRSQALKVYHATECSGLARVDSMLS-SD 303

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            KV + E+N  PG T +S++P++    G S+ EL+  ++  A
Sbjct: 304 NKVIFNELNSLPGFTNISMYPKLFEQVGISYTELITKLLNYA 345


>gi|289450558|ref|YP_003474691.1| D-ala D-ala ligase N-terminal domain-containing protein
           [Clostridiales genomosp. BVAB3 str. UPII9-5]
 gi|289185105|gb|ADC91530.1| D-ala D-ala ligase N-terminal domain protein [Clostridiales
           genomosp. BVAB3 str. UPII9-5]
          Length = 371

 Score =  290 bits (744), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 95/357 (26%), Positives = 163/357 (45%), Gaps = 63/357 (17%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           +AV+ GG+S+E  VS  S     +AL++  + V  + + ++   +               
Sbjct: 4   VAVIFGGVSTEHLVSCRSAFYVINALKELKYDVLPLGITKAGDWLPLLVEPEVLLTEGWE 63

Query: 46  --------LAHLK---------------------PDLAFNVLHGNFGEDGLVQAILELLE 76
                     H +                     P++ F  +HG   EDG +Q  L + +
Sbjct: 64  QAAYKAWHKKHARGLKIKEVFNPRRFFTYFFGKNPEVIFPAVHGINCEDGTLQGFLNMTD 123

Query: 77  IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------------QHLI 124
           IPY  SG+LASAL M+K+ +KQ+ ++  +PV P  +V R  +              + ++
Sbjct: 124 IPYVGSGVLASALGMNKIFAKQIWAANKLPVVPYYVVTRDDLAKDSIGLPETSAAVEKVL 183

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
           + P  +KP  GGSS+G         +   L + S ++   ++L+EQY+   EL   V+G+
Sbjct: 184 TYPIFLKPASGGSSVGTFKAGNRSELVAALGEVSKFDR--EILLEQYIPARELEVAVLGN 241

Query: 185 ASLDVTEIAV----PKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
                  +          FY YE KY ++  S+  LPA +P D+ + +  LA  A++ +G
Sbjct: 242 LQPQAPMVGEILMQADVAFYDYETKYFAAGASSLALPADLPTDLAERILNLAQKAYKVLG 301

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           C+G++R DF  D  S  ++  EIN  PG T  S++P+  A AG +   L+  +   A
Sbjct: 302 CKGMARVDFFLDRCSGALYLNEINSLPGFTATSLYPQAWAKAGINLPALVDQLCRLA 358


>gi|295396022|ref|ZP_06806206.1| D-alanine-D-alanine ligase [Brevibacterium mcbrellneri ATCC 49030]
 gi|294971110|gb|EFG47001.1| D-alanine-D-alanine ligase [Brevibacterium mcbrellneri ATCC 49030]
          Length = 369

 Score =  290 bits (744), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 90/356 (25%), Positives = 155/356 (43%), Gaps = 63/356 (17%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           +AVL GG S E  VS  +     + ++   F++  I +       + H            
Sbjct: 7   VAVLFGGRSPEHSVSCVTAAGVMNEIDPNAFRLLPIGITPEGKWRVVHDWKSFSFDRDNM 66

Query: 50  ---------------------------------KPDLAFNVLHGNFGEDGLVQAILELLE 76
                                             PD+ F +LHG +GEDG +Q +L L++
Sbjct: 67  PRIEDNQTEVFVSPSKNGSLIERDAQGAFADLGSPDIVFPLLHGQYGEDGTMQGLLSLMD 126

Query: 77  IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--------NRFTMDSQHLISPPY 128
           +P+   G+ +S+  MDK  +K V+ + G+P      V         + T+DS   +  P 
Sbjct: 127 VPFVGPGVFSSSAGMDKHFTKMVLRAAGIPTADWKTVSLTQYQADPQATIDSLQELGLPA 186

Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG---DA 185
            +KP + GSS+GI  +         L    ++ H  ++++E +VDG E+ C V+G   D 
Sbjct: 187 FVKPSRAGSSVGISKVSDTSGFKAALDD--AFAHDTKVIVEPFVDGREIECAVLGSVNDR 244

Query: 186 SLDVT----EIAVPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
            L  +     I     +FY ++ KY     +T   PA +  D+ + V+ +A    +A  C
Sbjct: 245 ELKASSPGEIIVSGDHEFYDFDAKYLDLDATTLTCPADVEPDVAERVRDIACQTFRAFDC 304

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            G++R D    P + +V   EIN  PG TP S +P M   +G  +++L+  +++ A
Sbjct: 305 TGLTRVDTFVRP-NGEVLVNEINTSPGFTPTSGYPFMWEQSGLPYKDLITELLKIA 359


>gi|94971618|ref|YP_593666.1| D-alanine--D-alanine ligase [Candidatus Koribacter versatilis
           Ellin345]
 gi|94553668|gb|ABF43592.1| D-alanine--D-alanine ligase [Candidatus Koribacter versatilis
           Ellin345]
          Length = 393

 Score =  290 bits (743), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 103/374 (27%), Positives = 157/374 (41%), Gaps = 80/374 (21%)

Query: 1   MAVLMGGISSEREV-------------------------------------SLSSGKACA 23
           + VL GG S E +V                                     SL +GK   
Sbjct: 7   VGVLFGGRSGEHDVSLLSAASVINAVDKKKFEVVPIGITKEGKWLTASHAESLLNGKKAE 66

Query: 24  SALED------------AGFKVSQIDV-------------DRSVGLVLAHLKPDLAFNVL 58
             L              A  +   +                 + G   + +  D+ F VL
Sbjct: 67  QQLRAGDPEATPGAAVLAKGEAVLVPPVPQSDRSAIVPFETDAAGHSASSIDVDVIFPVL 126

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
           HG FGEDG +Q + EL  IPY  +G+L SA  MDK   K +  + G+P+   + V R   
Sbjct: 127 HGTFGEDGTIQGLFELANIPYVGAGVLGSAAGMDKDIMKALFKNAGLPIVKHMTVLRSQW 186

Query: 119 DSQHL---------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
             +           +  P  +KP   GSS+GI      + +   L +++ ++   +L+IE
Sbjct: 187 QREPKKVKKLVESKLKYPVFVKPANLGSSVGISKAHDSKELGPALDEAAKFDR--KLVIE 244

Query: 170 QYVDG-----IELTCGVMGDASLDVTEIA--VPKSDFYSYELKYSSLNSTHVLPAKIPLD 222
           Q V G      E+ C V+G+     +     VP  +FY Y  KY    S   +PAK+P  
Sbjct: 245 QGVGGKKKKAREIECSVLGNDEPKASVPGEIVPIKEFYDYAAKYLDEGSALEIPAKLPKS 304

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAG 282
             K+VQ LA  A QA+   G+ R DFL DP S K++  EIN  PG T +S++P++   +G
Sbjct: 305 TQKQVQELAIRAFQAVDGSGLGRVDFLIDPKSNKLYVNEINTMPGFTSISMYPKLWEASG 364

Query: 283 YSFRELLLWMVEDA 296
             + +L+  ++E A
Sbjct: 365 LKYTDLITRLIELA 378


>gi|54295449|ref|YP_127864.1| D-alanine--D-alanine ligase A [Legionella pneumophila str. Lens]
 gi|81367752|sp|Q5WTI9|DDL_LEGPL RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|53755281|emb|CAH16775.1| D-alanine--D-alanine ligase A [Legionella pneumophila str. Lens]
 gi|307611491|emb|CBX01162.1| D-alanine--D-alanine ligase A [Legionella pneumophila 130b]
          Length = 364

 Score =  290 bits (743), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 79/345 (22%), Positives = 155/345 (44%), Gaps = 51/345 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS-----------------VG 43
           + +L GG S E EVSL S  +    L+   + +  I +D+S                 + 
Sbjct: 7   LVLLYGGKSGEHEVSLVSAASVLKHLDSEKYHIIPIAMDKSGRFHRHDYNDLLACSDKLP 66

Query: 44  LVLAHLKP--------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
           +V     P              ++ F V+HG   EDG +Q +LEL  + Y    +L+SA+
Sbjct: 67  VVTEKSTPLEGLLINGRLAVDAEIVFPVVHGPLYEDGCLQGLLELAGVAYVGCDVLSSAI 126

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH---------LISPPYVIKPLKGGSSLG 140
            MDK  ++++    G+      L++     S+              P  +KP   GSS+G
Sbjct: 127 GMDKDMARRLACINGLKSARYKLLSWHANASERQQFCHEVASEFGWPLFVKPCSLGSSVG 186

Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD-------ASLDVTEIA 193
           I        +   +  +    + +++L+E+++ G E+   V+ +           V EI 
Sbjct: 187 IHKANNMDELNAAVADAL--RYDEEILVEEFIVGREIELAVLENSIPCGKPRVSMVGEIK 244

Query: 194 VPK-SDFYSYELKYSSLN-STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
           V     +YSY  KY   + +  ++PA++   + +++++ A      + C+G++R DF  +
Sbjct: 245 VNHPDGYYSYTAKYLESSQTDLIIPAQLNNSLEEQLKQAAANIFSYLKCKGMARVDFFVN 304

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             + ++++ EIN  PG T +S++P++    G ++ +LL  ++  A
Sbjct: 305 DKTEEIYFNEINTLPGFTSISMYPKLWQATGIAYPDLLDELINLA 349


>gi|308234070|ref|ZP_07664807.1| D-alanine--D-alanine ligase [Atopobium vaginae DSM 15829]
 gi|328943467|ref|ZP_08240932.1| D-alanine-D-alanine ligase [Atopobium vaginae DSM 15829]
 gi|327491436|gb|EGF23210.1| D-alanine-D-alanine ligase [Atopobium vaginae DSM 15829]
          Length = 317

 Score =  290 bits (743), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 113/308 (36%), Positives = 165/308 (53%), Gaps = 16/308 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFK-VSQIDV-DRSVGLVLAHLKPDLAFNVL 58
           +AVL GG S E ++SL SG  C  AL+ AGF  V   DV D S    LA  + D+AF  +
Sbjct: 11  IAVLAGGWSDEAQISLQSGTECVKALKTAGFTTVEMFDVKDLSFIQRLAAHEFDIAFVAM 70

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
           HG +GEDG +Q +LE+L IPYT SG+LASA+   K  +K    + G+P      +     
Sbjct: 71  HGRYGEDGCIQGLLEILHIPYTCSGVLASAMGTAKDIAKLAYENAGIPTPKDACLASDDE 130

Query: 119 DSQ-------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
             +         +  P  +KP   GSS G+  +++ + +   + +      G  +LIEQ 
Sbjct: 131 IDKNVVQHIVDKLGLPLFVKPTDNGSSFGVFKVEEQKDLADAIKEEQ--KTGTHVLIEQA 188

Query: 172 VDGIELTCGVMGD---ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           + G E+T  V+G+    +L + EI    + FY  + K       HV+PA++  D+Y   Q
Sbjct: 189 IVGTEITVPVIGNHHPHALPIVEIVF-NAPFYDIQAKAEPAPLHHVIPARLDKDVYAHAQ 247

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
            LA  AH A+GCRG+SR+DF+ D  +   + LE N+ PGMT  S+ P+ AA+ G  F EL
Sbjct: 248 ELAEQAHVALGCRGVSRTDFIVDE-NGVPYALETNIIPGMTERSLIPDSAAHEGMGFPEL 306

Query: 289 LLWMVEDA 296
              +VE A
Sbjct: 307 CKRLVEYA 314


>gi|309388982|gb|ADO76862.1| D-alanine/D-alanine ligase [Halanaerobium praevalens DSM 2228]
          Length = 350

 Score =  290 bits (743), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 91/338 (26%), Positives = 153/338 (45%), Gaps = 46/338 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS------------------- 41
           +A+  GG S+E E+SL S ++  +A +   + +  + +D+                    
Sbjct: 8   IALFFGGRSAEHEISLLSARSIYTAFDKKKYDIFPVAIDKKGFFINLEKSKKILLSDKKQ 67

Query: 42  ------------VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
                         L    LK DL F VLHG FGEDG +Q  LE L+I Y    + +SA+
Sbjct: 68  VPASANKSILTKELLEFLELKVDLVFPVLHGPFGEDGKIQGFLETLDINYIGCDLSSSAV 127

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ----------HLISPPYVIKPLKGGSSL 139
            MDK   KQ+ +   +P     + N+  ++ +               P+ +KP   GSS+
Sbjct: 128 GMDKAFMKQIFAYNNIPQAEFEIFNKSDLEKKSKKEVFASFSAKFGIPFFVKPANMGSSI 187

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS---LDVTEIAVPK 196
           GI  +K  +S    L  +  + +  +L+IE+ +   EL   V+   +   +      + +
Sbjct: 188 GINQVKDFKSFVKAL--AEGFKYDLKLIIEENIAARELESAVLATNTGIKVSTAGEIISE 245

Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256
           +DFY Y+ KY    +  ++PA +      +++ ++  A QAIG  G+SR DF  D     
Sbjct: 246 NDFYDYQAKYEDQKTKLIIPAPVSPTTAAKIKEISINAFQAIGALGLSRLDFFVDEEKEV 305

Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           +   EIN  PG T  S++P +    G SF E+L  +V+
Sbjct: 306 ILVNEINTMPGFTKFSMYPLLFKDMGISFSEILDSLVK 343


>gi|309805808|ref|ZP_07699845.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus iners
           LactinV 09V1-c]
 gi|308164928|gb|EFO67174.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus iners
           LactinV 09V1-c]
          Length = 360

 Score =  290 bits (743), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 91/342 (26%), Positives = 162/342 (47%), Gaps = 49/342 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------DRSVGLVLA----- 47
           + ++ GG SSE EVS+ SG+    A++   + V  + +        D     VL      
Sbjct: 7   VGLIFGGNSSEYEVSIISGRNIYKAIDKEKYDVYPMWITNTGFLASDADSRKVLEDPSYQ 66

Query: 48  ------------------HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
                               + D+ F ++HGN GEDG +Q +L +L+ P+    +LA+A+
Sbjct: 67  IENPHNVTNISNVIELSCRPEIDVFFPIVHGNLGEDGCLQGLLRILDKPFVGDDVLAAAI 126

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ-----------HLISPPYVIKPLKGGSS 138
           +MDK  +K +    GVPV   I + RF  +               +     +KP   GSS
Sbjct: 127 TMDKELNKIMAQRAGVPVADWISIKRFEYNDAKNEKLSYDYVSQKLGTDLFVKPANQGSS 186

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVP 195
           +GI  +         L  + ++ + D++L+E+ + G E+   V+G+    V+   +I   
Sbjct: 187 VGISHVTSASDYKAAL--AEAFKYDDKVLVEETIKGTEVETAVLGNDDAIVSGVGQITNA 244

Query: 196 KSDFYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
           +  +YSYE KY+  +++ +  PA +P +I + V+R A   + A  C G++R D +     
Sbjct: 245 QGSWYSYENKYNDNSTSKLQIPAALPSEIIETVRRQALKVYHATECSGLARVDSMLS-SD 303

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            KV + E+N  PG T +S++P++    G S+ EL+  ++  A
Sbjct: 304 NKVIFNELNSLPGFTNISMYPKLFEQVGISYTELITKLLNYA 345


>gi|257418442|ref|ZP_05595436.1| D-alanyl-D-alanine ligase [Enterococcus faecalis T11]
 gi|257160270|gb|EEU90230.1| D-alanyl-D-alanine ligase [Enterococcus faecalis T11]
 gi|315165081|gb|EFU09098.1| D-ala D-ala ligase [Enterococcus faecalis TX1302]
 gi|315167892|gb|EFU11909.1| D-ala D-ala ligase [Enterococcus faecalis TX1341]
 gi|315574117|gb|EFU86308.1| D-ala D-ala ligase [Enterococcus faecalis TX0309B]
          Length = 356

 Score =  290 bits (743), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 81/344 (23%), Positives = 152/344 (44%), Gaps = 51/344 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---LAHLKPD----- 52
           + +L GG S E +VS+ S  +  +A+    ++V  + + +    V   L   +P      
Sbjct: 3   IILLYGGRSEEHDVSVLSAYSVLNAIYYKYYQVQLVFISKDGQWVKGPLLSERPQNKEVL 62

Query: 53  -----------------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                        + F VLHG  GEDG +Q  +E + +PY  +G
Sbjct: 63  HLTWAQTPEETGEFSGKRISPSEIYEEEAIVFPVLHGPNGEDGTIQGFMETINMPYVGAG 122

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPLK 134
           +LASA +MDK+ +K ++ + G+P  P + V R              +  +  P  +KP  
Sbjct: 123 VLASANAMDKIMTKYLLQTVGIPQVPFVPVLRSDWKGNPKEVFEKCEGSLIYPVFVKPAN 182

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI-- 192
            GSS+GI  ++  + +        ++ +  + ++EQ ++  E+   ++G+  +  T    
Sbjct: 183 MGSSVGISKVENREELQE--ALEEAFRYDARAIVEQGIEAREIEVAILGNEDVRTTLPGE 240

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            V    FY Y+ KY +      +PA +P ++  + Q  A  A+  +   G+SR DF    
Sbjct: 241 VVKDVAFYDYDAKYINNTIEMQIPAHVPEEVAHQAQEYAKKAYIMLDGSGLSRCDFFLTS 300

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              ++F  E+N  PG T  S++P +    G  + +L+  +++ A
Sbjct: 301 K-NELFLNELNTMPGFTDFSMYPLLWENMGLKYSDLIEELIQLA 343


>gi|325977796|ref|YP_004287512.1| D-alanyl-alanine synthetase A [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
 gi|325177724|emb|CBZ47768.1| D-alanyl-alanine synthetase A [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
          Length = 347

 Score =  290 bits (743), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 94/334 (28%), Positives = 159/334 (47%), Gaps = 41/334 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           + +L GG S+ER+VS+ S ++   A+    F V    + +S   +               
Sbjct: 6   LVLLYGGRSAERKVSVLSAESVMRAINYDKFFVKTYFITQSGDFIKTQEFSSKPADDEKL 65

Query: 47  ---------AHLKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
                      +KP        + F VLHG  GEDG +Q  LE+L++PY  + IL+S+++
Sbjct: 66  MTNATVVESQKIKPSDIYEEGAVVFPVLHGPMGEDGSIQGFLEILKMPYVGTNILSSSVA 125

Query: 91  MDKMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
           MDK+ +K V+ S GVP+   +       + +   +    ++ P  +KP   GSS+GI   
Sbjct: 126 MDKISTKHVLESAGVPLVAYVTYVEGADLEKAVAEVNEKLTYPVFVKPANMGSSVGISKA 185

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202
             ++ +   +  +    +  ++LIE  V+  E+  G++G+A +  T     V    FY Y
Sbjct: 186 DDEEGLRSAIDLAL--KYDSRILIETGVNAREIEVGILGNADVQTTLPGEVVKDVAFYDY 243

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
           + KY     T  +PA I   I +E++  A  A +AIG  G+SR DF        V+  E+
Sbjct: 244 DAKYIDNKITMDIPAHIDSSIMEEMRGYATTAFRAIGGCGLSRCDFFLTE-DGHVYLNEL 302

Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           N  PG T  S++P +    G ++ +L+  +VE A
Sbjct: 303 NTMPGFTQWSMYPLLWENMGLAYSDLIEKLVELA 336


>gi|212716767|ref|ZP_03324895.1| hypothetical protein BIFCAT_01704 [Bifidobacterium catenulatum DSM
           16992]
 gi|212660471|gb|EEB21046.1| hypothetical protein BIFCAT_01704 [Bifidobacterium catenulatum DSM
           16992]
          Length = 384

 Score =  290 bits (743), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 87/370 (23%), Positives = 157/370 (42%), Gaps = 77/370 (20%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           + V+ GG + E  +S  S      AL+   F+  ++ + ++   ++    P         
Sbjct: 12  IVVMYGGKADEHSISCISAAGVLRALDTDKFEAIEVGITKNGEWIVDGEDPRKWNMSEGL 71

Query: 52  --------------------------------------DLAFNVLHGNFGEDGLVQAILE 73
                                                 D    VLHG +GEDG +Q + E
Sbjct: 72  PVVEKTDSSKDVVLDVALGQDGFFAREDDGTLTSLGHVDAVLPVLHGPYGEDGTIQGLFE 131

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------------- 120
           ++ +PY   G+LASA  MDK  +K ++++ G+PV P I ++    D+             
Sbjct: 132 MMNVPYVGCGVLASAACMDKHYTKVLLAAAGIPVAPGITLDVRDYDAASEFAAEADEMLA 191

Query: 121 ---QHLISPPYVIKPLKGGSSLGIIVIKKD-QSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
              Q  +  P  +KP + GSS G+  ++ +  +  L      + +H  ++L+EQ +D  E
Sbjct: 192 AVQQAGLQYPLFVKPSRAGSSFGVTKVEHEGDAAELAAAVFEASHHDWRVLVEQGIDARE 251

Query: 177 LTCGVMGDASLDVTEIAVP-----------KSDFYSYELKYSSLNSTHVL-PAKIPLDIY 224
           + C V+   + +  + + P              FY ++ KY + +++HV  PA +P +  
Sbjct: 252 IECAVLCPKAGEAPQASWPGEIVLDKRAEGDDQFYDFDSKYVNSDASHVEVPASLPEETL 311

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
             V+  A  A  A+   G+SR D        +V   EIN  PG TP+S++P+     G S
Sbjct: 312 NRVRETAKKAFIAVDGAGLSRVDTFVTA-DGEVMVNEINTMPGFTPISMYPKAWEATGVS 370

Query: 285 FRELLLWMVE 294
           + +L+  ++E
Sbjct: 371 YTDLITTLIE 380


>gi|307700634|ref|ZP_07637662.1| D-ala D-ala ligase N-terminal domain protein [Mobiluncus mulieris
           FB024-16]
 gi|307614164|gb|EFN93405.1| D-ala D-ala ligase N-terminal domain protein [Mobiluncus mulieris
           FB024-16]
          Length = 374

 Score =  290 bits (743), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 87/360 (24%), Positives = 155/360 (43%), Gaps = 66/360 (18%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           +AV+ GG S E  +S ++       ++   F+   I + R    VL              
Sbjct: 9   VAVIFGGSSGEHSISCATAAGVLEHIDRNRFEPVPIGITRGGAWVLMPDEVEALRLQDGQ 68

Query: 47  ---------------------------------AHLKPDLAFNVLHGNFGEDGLVQAILE 73
                                               + D+   +LHG +GEDG +Q + E
Sbjct: 69  GAEVTDNGTFVALVPQNQHLFFWDTRVADSPIRDLGRIDVVMPLLHGPYGEDGTIQGLCE 128

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH--------LIS 125
           ++ +PYT  G+ ASAL MDK  +KQV+   G+PV    ++  +    +          + 
Sbjct: 129 MVGVPYTGCGVTASALCMDKGYTKQVLERGGIPVGRFHVITDYAWRHRESAVPAEVLDLG 188

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGD 184
            P  +KP + GSSLG+  ++  +     ++  ++  H  ++++E  V G  E+ C V+  
Sbjct: 189 LPVFVKPSRAGSSLGVSRVEAWEEFEAAVV--AARRHDPKVIVEAGVVGAREVECAVLEG 246

Query: 185 ASLDVTEIAVPKS-------DFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQ 236
                   A P           Y +E KY + ++  + +PA+IP  + K +   A  A +
Sbjct: 247 RDGAAPRTAFPGEVVMKQTPGLYDFESKYFAQDAVSLSIPAQIPELVAKRICDYARQAFE 306

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            +   G++R DF +   + ++   EIN  PGMTP S+FP M  + G  +++L+  ++E A
Sbjct: 307 LVSGEGLARVDFFYVEETGRLILNEINTMPGMTPFSLFPGMWEHMGMPYQDLVTELIEIA 366


>gi|110804402|ref|YP_687922.1| D-alanyl-alanine synthetase A [Shigella flexneri 5 str. 8401]
 gi|110613950|gb|ABF02617.1| D-alanine-D-alanine ligase A [Shigella flexneri 5 str. 8401]
          Length = 346

 Score =  290 bits (743), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 84/334 (25%), Positives = 156/334 (46%), Gaps = 55/334 (16%)

Query: 15  SLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP--------------- 51
           SL S K    A++ + F V  + +D+            +L    P               
Sbjct: 2   SLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQV 61

Query: 52  --------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSM 91
                               D+ F ++HG  GEDG +Q +L +  +P+  S +LASA  M
Sbjct: 62  PGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACM 121

Query: 92  DKMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLISPPYVIKPLKGGSSLGIIVIK 145
           DK  +K+++   G+ + P I + R         + +  +  P  +KP   GSS+G+  + 
Sbjct: 122 DKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVT 181

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA--VPKSDFYSYE 203
            ++   + +  +  ++H  ++++EQ + G E+ C V+G+ +   +     V  SDFY+Y+
Sbjct: 182 SEEQYAIAVDLAFEFDH--KVIVEQGIKGREIECAVLGNDNPQASTCGEIVLTSDFYAYD 239

Query: 204 LKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
            KY     +  V+PA I  +I  +++ +A  A+Q +GC G++R D    P   +V   EI
Sbjct: 240 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTP-ENEVVINEI 298

Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           N  PG T +S++P++   +G  + +L+  ++E A
Sbjct: 299 NTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 332


>gi|225351209|ref|ZP_03742232.1| hypothetical protein BIFPSEUDO_02799 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225158665|gb|EEG71907.1| hypothetical protein BIFPSEUDO_02799 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 384

 Score =  290 bits (743), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 87/370 (23%), Positives = 157/370 (42%), Gaps = 77/370 (20%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           + V+ GG + E  +S  S      AL+   F+  ++ + ++   ++    P         
Sbjct: 12  IVVMYGGKADEHSISCISAAGVLRALDTDKFEAIEVGITKNGEWIVGGEDPRKWNMSEGL 71

Query: 52  --------------------------------------DLAFNVLHGNFGEDGLVQAILE 73
                                                 D    VLHG +GEDG +Q + E
Sbjct: 72  PMVEKTDSSKDVVLDVALGQDGFFAREDDGTLTSLGHVDAVLPVLHGPYGEDGTIQGLFE 131

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------------- 120
           ++ +PY   G+LASA  MDK  +K ++++ G+PV P I ++    D+             
Sbjct: 132 MMNVPYVGCGVLASAACMDKHYTKVLLAAAGIPVAPGITLDVRDYDAASEFAAEADEMLA 191

Query: 121 ---QHLISPPYVIKPLKGGSSLGIIVIKKD-QSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
              Q  +  P  +KP + GSS G+  ++ +  +  L      + +H  ++L+EQ +D  E
Sbjct: 192 AVQQAGLQYPLFVKPSRAGSSFGVTKVEHEGDAAELAAAVFEASHHDWRVLVEQGIDARE 251

Query: 177 LTCGVMGDASLDVTEIAVP-----------KSDFYSYELKYSSLNSTHVL-PAKIPLDIY 224
           + C V+   + +  + + P              FY ++ KY + +++HV  PA +P +  
Sbjct: 252 IECAVLCPKAGEAPQASWPGEIVLDKRAEGDDQFYDFDSKYVNSDASHVEVPASLPEETL 311

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
             V+  A  A  A+   G+SR D        +V   EIN  PG TP+S++P+     G S
Sbjct: 312 NRVRETAKKAFIAVDGAGLSRVDTFVTA-DGEVMVNEINTMPGFTPISMYPKAWEATGVS 370

Query: 285 FRELLLWMVE 294
           + +L+  ++E
Sbjct: 371 YTDLITTLIE 380


>gi|154267923|gb|ABS72058.1| D-alanine:D-lactate ligase [Ruminococcus gauvreauii]
          Length = 343

 Score =  290 bits (743), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 82/336 (24%), Positives = 147/336 (43%), Gaps = 45/336 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +AVL GG S E  VS+ S    A+ ++   ++   I + +S    +              
Sbjct: 6   VAVLFGGCSEEHNVSIKSAMEIAANIDTKKYQPYYIGITKSGVWKMCEKPCLEWEQYAGD 65

Query: 52  --------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
                                     D+   ++HG FGEDG +Q +LEL  IPY    I 
Sbjct: 66  PVVFSPDRSTHGLLIQKDKGYEIQPVDVVLPMIHGKFGEDGSIQGLLELSGIPYVGCDIQ 125

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145
           +S   MDK  +  VV + G+ V    ++             P  +KP + GSS G+  + 
Sbjct: 126 SSVTCMDKALAYTVVKNAGIAVPGFRILQEGDRLETEDFVYPVFVKPARSGSSFGVNKVC 185

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYS 201
           K + +   +    +  +  ++LIE+ V G E+ C ++G+     + +V +I +    F  
Sbjct: 186 KAEELQAAI--EEARKYDSKILIEEAVTGSEVGCAILGNGNDLMAGEVDQIELRHGFFKI 243

Query: 202 Y---ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
           +   + +  S N+   +PA +P ++ + +Q+ A   ++ +GCRG++R D         + 
Sbjct: 244 HQEAQPEKGSENAVIRVPAALPDEVRERIQKTAMKIYRILGCRGLARIDLFLRE-DGCIV 302

Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             E+N  PG T  S +P M   AG++  E+L  ++E
Sbjct: 303 LNEVNTMPGFTSYSRYPRMMTAAGFTLTEILDRLIE 338


>gi|327329971|gb|EGE71725.1| D-alanine--D-alanine ligase [Propionibacterium acnes HL097PA1]
          Length = 365

 Score =  290 bits (743), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 93/355 (26%), Positives = 148/355 (41%), Gaps = 62/355 (17%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           +AV+ GG+SSE  +S  S     +A++   F VS + +      V               
Sbjct: 6   VAVIFGGMSSEHSISCLSAANVVAAIDAERFDVSGVGISPEGIWVRYGADEILALPGTGQ 65

Query: 47  -------------------------AHLKPD---LAFNVLHGNFGEDGLVQAILELLEIP 78
                                         D   + F VLHG FGEDG +Q +LE+  + 
Sbjct: 66  LPTVEVGDRPLVSVKQMPEGTCIVDTEGNVDAVQVVFPVLHGPFGEDGTIQGLLEMAGVR 125

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--------DSQHLISPPYVI 130
           Y   G+ ASA  MDK  +K ++S  GV V   ++V              +   +  P  +
Sbjct: 126 YVGCGVAASANCMDKHLTKMILSEAGVLVGRYVVVRDHEWREDRNAVLKAASRLEYPLFV 185

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190
           KP +GGSS+GI  +   + +   +    +  H  ++LIEQ + G E+ C V+        
Sbjct: 186 KPARGGSSIGISRVTSPEHLETAI--EMAREHDSKVLIEQGIRGREIECSVIDGRHGAAP 243

Query: 191 EIAVPK-------SDFYSYELKYSSL--NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241
             +VP          FY +E KY S    ++    A +     + VQ++A  A Q +GC 
Sbjct: 244 RASVPGEIVVHDPDGFYDFEAKYLSGEQKASVQAHANLDDATRRRVQKVAIKAFQVLGCE 303

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           G++R D    P    V+  E N  PG T  S FP M   +G ++ +++  ++E A
Sbjct: 304 GLARIDTFVTP-DGAVYVNEPNTMPGFTRSSGFPLMWQASGMTYAQIVSELIELA 357


>gi|309809166|ref|ZP_07703039.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus iners
           SPIN 2503V10-D]
 gi|308170611|gb|EFO72631.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus iners
           SPIN 2503V10-D]
          Length = 360

 Score =  290 bits (743), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 91/342 (26%), Positives = 162/342 (47%), Gaps = 49/342 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------DRSVGLVLA----- 47
           + ++ GG SSE EVS+ SG+    A++   + V  + +        D     VL      
Sbjct: 7   VGLIFGGNSSEYEVSIISGRNIYKAIDKEKYDVYPMWITNTGFLASDADSRKVLEDPTYQ 66

Query: 48  ------------------HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
                               + D+ F ++HGN GEDG +Q +L +L+ P+    +LA+A+
Sbjct: 67  IENPHTVTNISNVIELSNRPEIDVFFPIVHGNLGEDGCLQGLLRILDKPFVGDDVLAAAI 126

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ-----------HLISPPYVIKPLKGGSS 138
           +MDK  +K +    GVPV   I + RF  +               +     +KP   GSS
Sbjct: 127 TMDKELNKIMAQRAGVPVADWISIKRFEYNDAKNEKLSYDYVSQKLGTDLFVKPSNQGSS 186

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVP 195
           +GI  +         L  + ++ + D++L+E+ + G E+   V+G+    V+   +I   
Sbjct: 187 VGISHVTSAADYEKAL--AEAFKYDDKVLVEETIKGTEVETAVLGNDDAIVSGVGQITNA 244

Query: 196 KSDFYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
           +  +YSYE KY+  +++ +  PA +P +I + V+R A   + A  C G++R D +     
Sbjct: 245 QGSWYSYENKYNDNSTSKLQIPAALPSEIIETVRRQALKVYHATECSGLARVDSMLS-SD 303

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            KV + E+N  PG T +S++P++    G S+ EL+  ++  A
Sbjct: 304 NKVIFNELNSLPGFTNISMYPKLFEQVGISYTELITKLLNYA 345


>gi|161506745|ref|YP_001576695.1| D-alanyl-alanine synthetase A [Lactobacillus helveticus DPC 4571]
 gi|260102150|ref|ZP_05752387.1| D-alanine-D-alanine ligase A [Lactobacillus helveticus DSM 20075]
 gi|190359176|sp|A8YWP6|DDL_LACH4 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|160347734|gb|ABX26408.1| D-alanine-D-alanine ligase [Lactobacillus helveticus DPC 4571]
 gi|260084040|gb|EEW68160.1| D-alanine-D-alanine ligase A [Lactobacillus helveticus DSM 20075]
 gi|328464938|gb|EGF36226.1| D-alanyl-alanine synthetase A [Lactobacillus helveticus MTCC 5463]
          Length = 360

 Score =  290 bits (743), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 90/340 (26%), Positives = 153/340 (45%), Gaps = 49/340 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           + ++ GG SSE EVS+ S +    A++   F V  I +                      
Sbjct: 7   VGLIFGGNSSEYEVSIVSCRNIYKAIDKEKFDVHPIWITNEGYFANEEESFKVLEDPSYQ 66

Query: 52  ----------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
                                 D+ F ++HGN GEDG++Q +  L+  P+    +LA+A+
Sbjct: 67  VKNPHKVHNISNLIELENLPEIDVFFPIVHGNLGEDGVLQGLFRLMNKPFVGDDVLAAAV 126

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-----------QHLISPPYVIKPLKGGSS 138
           +MDK  +K +    GVPV   I + RF  D               +     +KP   GSS
Sbjct: 127 TMDKEFTKILAQRVGVPVADWITIKRFEYDDKNNDKLDYEKVAEKLGRDMFVKPSNQGSS 186

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL---DVTEIAVP 195
           +G+  +         L +  ++ + D++L+E+ V G E+   V+G+       V +I   
Sbjct: 187 VGVSHVTNADEYAAALKE--AFKYDDKVLVEETVPGTEVETAVLGNDKPIVAGVGQITNA 244

Query: 196 KSDFYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
           K  FYSY+ KY   +++ +  PA +P +I   V+R A   ++   C G++R D +  P  
Sbjct: 245 KGSFYSYKNKYDDNSTSKLQIPADLPQEIIDTVRRNARKVYEVTECSGMARIDSMLTP-G 303

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            KV   E+N  PG T +S++P++   AG  + EL+  ++E
Sbjct: 304 GKVVLTEVNALPGFTNISMYPKLFEEAGVPYTELITRLIE 343


>gi|116628785|ref|YP_813957.1| D-alanine-D-alanine ligase related ATP-grasp enzyme [Lactobacillus
           gasseri ATCC 33323]
 gi|116094367|gb|ABJ59519.1| D-alanine--D-alanine ligase [Lactobacillus gasseri ATCC 33323]
          Length = 375

 Score =  290 bits (743), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 92/342 (26%), Positives = 161/342 (47%), Gaps = 48/342 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------DRSVGLVLAHLK-- 50
           + ++ GG SSE EVS+ S       ++   F V  + +        D     VL + K  
Sbjct: 21  VGLIFGGNSSEYEVSIMSAHNIYEEIDTNKFDVYPMWITNDGYLANDADSRKVLDNPKME 80

Query: 51  ---------------------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
                                 D+ F ++HGN GEDG +Q +  +L+ P+    +LA+A+
Sbjct: 81  VANPHKVANISNIVELKDRPEIDVFFPIVHGNLGEDGCLQGLFRVLDKPFVGDDVLAAAV 140

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH-----------LISPPYVIKPLKGGSS 138
           +MDK  +K +    GVPV   I V RF  +               +     +KP   GSS
Sbjct: 141 TMDKEMTKILAQRAGVPVAKWIAVKRFEYNDPDNNKLDYEYVASQLGSDLFVKPSNQGSS 200

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL---DVTEIAVP 195
           +G+  +  ++   + L  + ++ + D++L+E+ V G E+   V+G+       V +I   
Sbjct: 201 VGVSHVTNEKEYKVAL--AEAFKYDDKVLVEETVHGTEVETAVLGNDKPIVAGVGQIINA 258

Query: 196 KSDFYSYELKYSSLN-STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
           K  FY+YE KY   + ST  +PAK+P  I ++V++ A    QA  C G++R D +     
Sbjct: 259 KDSFYTYENKYDDNSTSTLEIPAKLPEGIVEKVRKNALKVFQATECSGLARIDSMLRTED 318

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           ++V   E+N  PG T +S++P++    G  + +L+  +++ A
Sbjct: 319 KEVVLTEVNALPGFTNISMYPKLFEEVGIPYTDLITKLIDYA 360


>gi|168334521|ref|ZP_02692682.1| D-alanine--D-alanine ligase [Epulopiscium sp. 'N.t. morphotype B']
          Length = 349

 Score =  290 bits (742), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 84/347 (24%), Positives = 159/347 (45%), Gaps = 53/347 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           + ++ GG SSE EVSL S       ++   F +  + + +    +L              
Sbjct: 5   ILLIFGGQSSEHEVSLKSVTTIYENIDHELFDIYPVGITKEGKWLLYRGAXFNFTENNWQ 64

Query: 49  -------LKPDL---------------------AFNVLHGNFGEDGLVQAILELLEIPYT 80
                  L PD+                      F ++HG +GEDG +Q +  L ++P+ 
Sbjct: 65  EKGVPCILSPDVTHHGLLLLRDAQDIVNIKINKVFPIMHGKYGEDGTIQGLCTLAQLPFV 124

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--------DSQHLISPPYVIKP 132
             G+L+SA+SMDK  +K  V   G+     +LV    +          +     PY +KP
Sbjct: 125 GCGVLSSAISMDKSFTKIAVEKTGIRQAKYVLVKSSELKHMNQVVSKIEETFGYPYFVKP 184

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192
              GSS+GI  +   + +   L  ++      ++L+E+ + G E+   V+G+  L ++ +
Sbjct: 185 ANAGSSVGINKVHNKRELEHALRVAA--KEDAKILVEETIIGREVEVAVLGNEELQISGV 242

Query: 193 A--VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
              +  ++FY ++ KY++  S  V+ A++P +I + ++  A   ++A+  +G+SR DF  
Sbjct: 243 GEILAAAEFYDFDAKYNNAESKTVICAELPDEIKENLREAAKKIYKAVDAKGLSRVDFFV 302

Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
              +  + + EIN  PG T +S++P +    G S + L+  ++  AS
Sbjct: 303 TE-TGDMIFNEINTMPGFTKISMYPMLFEDFGISIKNLITELINLAS 348


>gi|227874805|ref|ZP_03992958.1| D-alanine--D-alanine ligase [Mobiluncus mulieris ATCC 35243]
 gi|306818097|ref|ZP_07451828.1| D-alanine-D-alanine ligase [Mobiluncus mulieris ATCC 35239]
 gi|227844580|gb|EEJ54736.1| D-alanine--D-alanine ligase [Mobiluncus mulieris ATCC 35243]
 gi|304649061|gb|EFM46355.1| D-alanine-D-alanine ligase [Mobiluncus mulieris ATCC 35239]
          Length = 374

 Score =  290 bits (742), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 87/360 (24%), Positives = 154/360 (42%), Gaps = 66/360 (18%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           +AV+ GG S E  +S ++       ++   F+   I + R    VL              
Sbjct: 9   VAVIFGGSSGEHSISCATAAGVLEHIDRNRFEPVPIGITRGGAWVLMPDEVEALRLQDGQ 68

Query: 47  ---------------------------------AHLKPDLAFNVLHGNFGEDGLVQAILE 73
                                               + D+   +LHG +GEDG +Q + E
Sbjct: 69  GAEVTDNGTFVALVPQNQHLFFWDTRVADSPIRDLGRIDVVMPLLHGPYGEDGTIQGLCE 128

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH--------LIS 125
           ++ +PYT  G+ ASAL MDK  +KQV+   G+PV    ++  +    +            
Sbjct: 129 MVGVPYTGCGVTASALCMDKGYTKQVLERGGIPVGRFHVITDYAWRHRESAVPAEVLDFG 188

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGD 184
            P  +KP + GSSLG+  ++  +     ++  ++  H  ++++E  V G  E+ C V+  
Sbjct: 189 LPVFVKPSRAGSSLGVSRVEAWEEFEAAVV--AARRHDPKVIVEAGVVGAREVECAVLEG 246

Query: 185 ASLDVTEIAVPKS-------DFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQ 236
                   A P           Y +E KY + ++  + +PA+IP  + K +   A  A +
Sbjct: 247 RDGAAPRTAFPGEVVMKQTPGMYDFESKYFAQDAVSLSIPAQIPELVAKRICDYARQAFE 306

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            +   G++R DF +   + ++   EIN  PGMTP S+FP M  + G  +++L+  ++E A
Sbjct: 307 LVSGEGLARVDFFYVEETGRLILNEINTMPGMTPFSLFPGMWEHMGMPYQDLVTELIEIA 366


>gi|220901858|gb|ACL82961.1| VanM [Enterococcus faecium]
          Length = 343

 Score =  290 bits (742), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 82/335 (24%), Positives = 148/335 (44%), Gaps = 45/335 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           +A+L GG S E  VS+ S    A+ ++   ++   I + +S                   
Sbjct: 6   IAILFGGCSEEHNVSVKSAAEIANNIDIGKYEPIYIGITQSGVWKTCEKPCIDWDNEHCR 65

Query: 49  -----------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
                                   + D+ F+VLHG  GEDG +Q + EL  IPY    I 
Sbjct: 66  SAVLSPDKKMHGLLIMQDKGYQIQRIDVVFSVLHGKSGEDGAIQGLFELSGIPYVGCDIQ 125

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145
           +SA+ MDK  +  +  + G+      ++ +    +    + P  +KP + GSS G+  + 
Sbjct: 126 SSAVCMDKSLAYIIAKNAGIATPEFQVIYKDDKPAADSFTYPVFVKPARSGSSYGVNKVN 185

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYS 201
               +   +    +  +  ++LIEQ V G E+ C V+G++      +V +I +    F  
Sbjct: 186 SADELDSAIDL--ARQYDSKILIEQGVLGYEVGCAVLGNSFDLIVGEVDQIRLQHGIFRI 243

Query: 202 Y---ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
           +   E +  S N+T  +PA++  +  + ++  A   ++A+GCRG+SR D      + ++ 
Sbjct: 244 HQEAEPEKGSENATITVPAELSAEERERIKEAAKNIYKALGCRGLSRVDMFL-QDNGRIV 302

Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
             E+N  PG T  S +P M   AG +  EL+  ++
Sbjct: 303 LNEVNTMPGFTSYSRYPRMMVSAGITIPELIDHLI 337


>gi|52842818|ref|YP_096617.1| D-alanyl-alanine synthetase A [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|52629929|gb|AAU28670.1| D-alanine-D-alanine ligase A [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
          Length = 368

 Score =  290 bits (742), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 80/345 (23%), Positives = 154/345 (44%), Gaps = 51/345 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSV------------------ 42
           + +L GG S E EVSL S  +    L+   + +  I +D+S                   
Sbjct: 11  LVLLYGGKSGEHEVSLVSAASVLKHLDSEKYHIIPIAMDKSGRFHRHDYNDLLACSDKLP 70

Query: 43  -----------GLVLAHLKPD--LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
                       L+   L  D  + F V+HG   EDG +Q +LEL  + Y    +L+SA+
Sbjct: 71  VVTEKSTPLEGLLINGRLAVDAKIVFPVVHGPLYEDGCLQGLLELAGVAYVGCDVLSSAI 130

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH---------LISPPYVIKPLKGGSSLG 140
            MDK  ++++    G+      L++     S+              P  +KP   GSS+G
Sbjct: 131 GMDKDMARRLACINGLKSARYKLLSWHANASERQQFCHEVASEFGWPLFVKPCSLGSSVG 190

Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD-------ASLDVTEIA 193
           I        +   +  +    + +++L+E+++ G E+   V+ +           V EI 
Sbjct: 191 IHKANNMDELNAAVADAL--RYDEEILVEEFIVGREIELAVLENSIPCGKPRVSMVGEIK 248

Query: 194 VPK-SDFYSYELKYSSLN-STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
           V     +YSY  KY   + +  ++PA++   + +++++ A      + C+G++R DF  +
Sbjct: 249 VNHPDGYYSYTAKYLESSQTDLIIPAQLNNSLEEQLKQAAANIFSYLKCKGMARVDFFVN 308

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             + ++++ EIN  PG T +S++P++    G ++ +LL  ++  A
Sbjct: 309 DKTEEIYFNEINTLPGFTSISMYPKLWQATGIAYPDLLDELINLA 353


>gi|325678813|ref|ZP_08158411.1| D-ala D-ala ligase N-terminal domain protein [Ruminococcus albus 8]
 gi|324109317|gb|EGC03535.1| D-ala D-ala ligase N-terminal domain protein [Ruminococcus albus 8]
          Length = 361

 Score =  290 bits (742), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 85/350 (24%), Positives = 162/350 (46%), Gaps = 57/350 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALED--AGFKVSQIDVDRSVGLVL------------ 46
           +AV+ GG S+E +VS+ S      ++ +    ++V  I + +    +             
Sbjct: 6   IAVVFGGKSNEHDVSVVSAAHVIRSINENSDRYEVICIGITKKGHWLRYMGSTEDIENGK 65

Query: 47  ------------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLE 76
                                         +++K D+ F VLHG  GEDG +Q I ++ E
Sbjct: 66  WTDHPDNLACIFSPDPVHRGFIQLEEDGSYSNIKVDVVFPVLHGKNGEDGTIQGIFQMAE 125

Query: 77  IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--------QHLISPPY 128
           +P+    +++SA  MDK  +  ++ + G+     I +    +          +  +  P 
Sbjct: 126 VPFVGCDLISSACCMDKDVTHTILEAHGIKTAKWISMIYRDLAELDEKCALMEKKLGYPM 185

Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD 188
            +KP   GSS+GI      + +   +   +++ H  ++++EQ V G+EL C VMG+ +  
Sbjct: 186 YVKPANCGSSVGISKAHDLEELKAGIK--AAFTHDQKVVVEQEVKGVELECAVMGNDTPF 243

Query: 189 VTEIA--VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRS 246
            + +      ++FY Y+ KY++  S   +PA +   + +EV+ +A  A +A+GC G++R 
Sbjct: 244 ASTVGQIAAANEFYDYDAKYNNAASKTYIPAMVDEKVIEEVRDVAVRAFKAMGCGGLARV 303

Query: 247 DFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           DF       +V   EIN  PG T +S++P++  +AG S+ E    +++ A
Sbjct: 304 DFFLSDK-GEVILNEINTLPGHTKISMYPKLMEHAGISYAEQEDRLIKLA 352


>gi|311113810|ref|YP_003985032.1| D-alanine-D-alanine ligase [Rothia dentocariosa ATCC 17931]
 gi|310945304|gb|ADP41598.1| D-alanine-D-alanine ligase [Rothia dentocariosa ATCC 17931]
          Length = 374

 Score =  290 bits (742), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 95/360 (26%), Positives = 156/360 (43%), Gaps = 67/360 (18%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50
           +A+L GG SSE  +SL +      A++ + + V  I + +     L +L+          
Sbjct: 10  VALLCGGRSSEHPISLITAVGVLGAIDSSVYDVVTIGITKDGRWYLTNLEELSALLDAAP 69

Query: 51  -------------------------------------PDLAFNVLHGNFGEDGLVQAILE 73
                                                 D+ F ++HG FGEDG +Q +LE
Sbjct: 70  AHAEFTGGSHQVFLPLGAGDSRVHLVDADGNLEYGPALDVVFPLIHGPFGEDGTIQGLLE 129

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH--------LIS 125
           L E+PY   G+ ASA+ MDK   K    S G+ V    +V       +          + 
Sbjct: 130 LAELPYVGCGVTASAVGMDKHFMKVAFESAGLEVGSYEVVTDRQWTHEREESLKRITALG 189

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD- 184
            P  +KP + GSS GI  + K + +   +    +  H  ++++E  + G E+ CGV+   
Sbjct: 190 YPMFVKPTRAGSSFGITKVDKFEELVPAI--EEARRHDAKIIVEAGIVGREIECGVLDGH 247

Query: 185 -----ASLDVTEIAVPKSD--FYSYELKYSSLNS-THVLPAKIPLDIYKEVQRLAFLAHQ 236
                 +    EI V   D  FY ++ KY S +S     PA +P D+ + ++ LA  A  
Sbjct: 248 HGNMPRASYPGEIEVVDEDHGFYDFDAKYISKSSAVTRCPADLPKDMQERLRALAVKAFL 307

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           A+   G+SR+DF + P   ++   E+N  PG TP+S++  M    G S+ EL+  ++  A
Sbjct: 308 ALDGEGLSRADFFYTP-DGRLVINEVNTMPGFTPISMYKTMWENTGISYTELIDELLTLA 366


>gi|167752136|ref|ZP_02424263.1| hypothetical protein ALIPUT_00378 [Alistipes putredinis DSM 17216]
 gi|167660377|gb|EDS04507.1| hypothetical protein ALIPUT_00378 [Alistipes putredinis DSM 17216]
          Length = 331

 Score =  290 bits (742), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 101/323 (31%), Positives = 167/323 (51%), Gaps = 32/323 (9%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40
           +A++ GG SSERE++L S    ASAL+ A + ++ ID+                    D 
Sbjct: 6   IALMAGGDSSEREIALQSAAQIASALDPAKYDITLIDLHGRDWHYTSPDGRQWQVDKNDF 65

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           S+ +   H   D A  ++HG  GE+G +Q  L+++ IPY+   + +S ++ DK+ +K+ V
Sbjct: 66  SITIDGEHKAFDYALILIHGTPGENGRLQGYLDMMGIPYSSCSMTSSVVTFDKITTKRTV 125

Query: 101 SSCGVPVCPSILVNRFTMDSQHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
           +  G+P+       R +          +  P  +KP   GSS G+  +K +  I   +  
Sbjct: 126 AEFGIPLARGFFFGRDSRIDPKEIVRTLGLPVFVKPNASGSSFGVTKVKSEADILPAV-- 183

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDAS----LDVTEIAVPKSDFYSYELKYSSLNST 212
           + ++   D++LIE+ + G E+ CG++          +TEI V K +F+ YE KY++  S 
Sbjct: 184 AEAFTESDEILIEECIQGREMGCGMLIAKGREYIFPITEI-VSKKEFFDYEAKYTAGCSD 242

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
            + PA I  +I  E+ RL  LA++A  CRG+ R DF+  P   K + +EIN  PGM+  S
Sbjct: 243 EITPADIAPEIKAELNRLTALAYKACRCRGVVRVDFIVTP-EGKPYLIEINSIPGMSGGS 301

Query: 273 IFPEMAAYAGYSFRELLLWMVED 295
           I P+    AG +  EL   ++ED
Sbjct: 302 IVPKQVREAGMTLGELYDLIIED 324


>gi|90962058|ref|YP_535974.1| D-alanyl-alanine synthetase A [Lactobacillus salivarius UCC118]
 gi|122448837|sp|Q1WT60|DDL_LACS1 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|90821252|gb|ABD99891.1| D-alanine--D-alanine ligase [Lactobacillus salivarius UCC118]
          Length = 378

 Score =  290 bits (742), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 94/345 (27%), Positives = 165/345 (47%), Gaps = 52/345 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI------------------------ 36
           +A+L GG SSE +VS  S      AL+   + VS                          
Sbjct: 8   IALLFGGNSSEHDVSKRSAHNIYDALDKDKYDVSVFMFTKKGFLLGNKDSMRIFDGENED 67

Query: 37  --------DVDRSVGLV----LAHLK-PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                   DVD S  L     LA +K  D+ + V+HGN GEDG VQ +  LL  P+  SG
Sbjct: 68  DVVTEVIKDVDFSNPLANIQNLAEVKDVDVFYPVIHGNMGEDGTVQGLFRLLNKPWIGSG 127

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVIKPLKGGS 137
           + +S +S DK  +K++++  G+     +LV                +     +KP + GS
Sbjct: 128 VASSGVSFDKDLTKKLLTLNGIRNTKYVLVTPENKADYPYAKVAEELGETLFVKPARQGS 187

Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVT---EIA 193
           S+GI  ++ ++     L     +++  ++L+E+ +    E+ C V+G+  +  +    I 
Sbjct: 188 SVGIHKVRNEEEYNAALEDGFKYDY--KILVEEAIKNPREVECSVLGNRDIKASKLGAIR 245

Query: 194 VPK-SDFYSYELKYSSLNS-THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
           +P+  DFY Y  K+   +     +P K+P  + KE+Q+++  A +A+  RG++R DFL D
Sbjct: 246 IPESDDFYDYNNKFVDASGVVFEMPIKLPEKLTKEIQQMSLDAFRALDNRGLARMDFLVD 305

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                 ++ E+N  PG T +S++P++   +G S+ EL+  +++ A
Sbjct: 306 KND-VPYFGEVNTLPGFTNISLYPQLWEVSGISYSELIDQLIQLA 349


>gi|328956666|ref|YP_004374052.1| D-alanine--D-alanine ligase [Carnobacterium sp. 17-4]
 gi|328672990|gb|AEB29036.1| D-alanine--D-alanine ligase [Carnobacterium sp. 17-4]
          Length = 363

 Score =  290 bits (742), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 83/348 (23%), Positives = 153/348 (43%), Gaps = 57/348 (16%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL------------- 49
           ++ GG S+E ++S+ +  +    +    ++V  I + +S   V   +             
Sbjct: 5   LVYGGKSAEHDISILTAFSIIKEVYYDYYEVEPIYITKSGQWVKGAIVKQANEVKDSDAL 64

Query: 50  ------------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPY 79
                                         +  + F VLHG  GEDG VQ + E++ +PY
Sbjct: 65  KLTISDSSKFATDENQNSEGILVQPSDLKEENAVIFPVLHGPNGEDGTVQGLFEVIGMPY 124

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVI 130
             +G+LASA  MDK+ SKQ+    G+P  P + V +              +  +  P  I
Sbjct: 125 VGAGVLASACGMDKIISKQLFQQAGLPQVPYVPVRKAEWLNDKESVFKHCEGTLFYPMYI 184

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190
           KP   GSS+GI   +    +   +  +    +  ++++EQ ++  E+   ++G+  + ++
Sbjct: 185 KPANLGSSVGISKAENRDELIEAIELAL--RYDRRVVVEQGIEAREIEVAILGNDDIHIS 242

Query: 191 EIA--VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                V   DFY YE KY +      +PA +P D+   ++  A  A QA+   G+SR DF
Sbjct: 243 VPGELVKTVDFYDYESKYLNNEVVLQIPALVPEDVNTRLREYAVRAFQALDGSGLSRCDF 302

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                + ++F  E+N  PG T  S++P +    G ++ +L+  +++ A
Sbjct: 303 FLT-SNDELFINEVNTMPGFTQFSMYPSLWKNTGLNYGDLVEELIQLA 349


>gi|260463766|ref|ZP_05811963.1| D-alanine/D-alanine ligase [Mesorhizobium opportunistum WSM2075]
 gi|259030363|gb|EEW31642.1| D-alanine/D-alanine ligase [Mesorhizobium opportunistum WSM2075]
          Length = 368

 Score =  290 bits (742), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 96/352 (27%), Positives = 160/352 (45%), Gaps = 56/352 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           +A+L GG S+E +VS  S      A++   ++V  I + R    +L              
Sbjct: 7   VAILYGGRSAEHDVSRLSAANVLKAIDRTRYEVVPIAISRDGRWLLQPSSEAGVDGAGAP 66

Query: 47  -----------------------AHLKPD-----LAFNVLHGNFGEDGLVQAILELLEIP 78
                                  A ++PD     + F VLHG FGEDG VQ   E+ ++ 
Sbjct: 67  VSGDGVEVALLPGGKGRLVAVPQAGVRPDLSPVDVVFPVLHGPFGEDGSVQGYAEVADVA 126

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT----MDSQHLISPPYVIKPLK 134
           Y   GILASA +MDK  +K+++   G+ V  S+ V R       +    +  P+  KP +
Sbjct: 127 YVGCGILASAAAMDKDVAKRLMREAGLAVARSVTVLRGDVCSFQEIAGALGLPFFAKPAR 186

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM--GDASLDVTE- 191
            GSS G+  +K        +   ++  +  ++LIE++V+G E+ C V+   D SL V+  
Sbjct: 187 QGSSFGVSKVKDRDGFEQAV--ETALRYDSKVLIEEFVEGREIECSVLQRADGSLTVSLP 244

Query: 192 ---IAVPKSDFYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
              I   K  FY+YE KY   +   V  PA +P  +  + + +A  A +A+GC  ++R D
Sbjct: 245 GEIIPAGKHGFYTYEAKYFDADGAVVKVPADVPAGVAGKAKEMAAQAFRALGCEAMARVD 304

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
           F        +   E+N  PG T +S++ +  A  G  + +++  ++E A   
Sbjct: 305 FFLRA-DGSLLVNEVNTLPGFTDISMYAKALAAIGIGYSQVIDVLIEHALAR 355


>gi|172040458|ref|YP_001800172.1| D-alanyl-alanine synthetase A [Corynebacterium urealyticum DSM
           7109]
 gi|229463746|sp|B1VG49|DDL_CORU7 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|171851762|emb|CAQ04738.1| D-alanine-D-alanine ligase [Corynebacterium urealyticum DSM 7109]
          Length = 362

 Score =  290 bits (742), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 99/355 (27%), Positives = 163/355 (45%), Gaps = 63/355 (17%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           +AV+ GG S+E  VS  S  A    L+   F V  + +      V               
Sbjct: 9   VAVVYGGQSTEHSVSCISAGAIIDNLDPERFTVVPVGITNGGAWVPGATDTAQLRASGRE 68

Query: 47  --------AHLKP--------------------------DLAFNVLHGNFGEDGLVQAIL 72
                    H++P                          D+ F VLHG  GEDG +Q + 
Sbjct: 69  LPTVADHGEHIQPMLGAAGEATEFRFVTGDRAGDVFATADVIFPVLHGANGEDGTIQGLF 128

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN---RFTMDSQHLISPPYV 129
           +LL   Y  +G+LASA  MDK  +K++    G+P  P ++++     T   + L+  P  
Sbjct: 129 DLLGARYVGNGVLASAAGMDKEFTKKIAREAGIPTGPEVVLHGRTELTDHERELLGLPVF 188

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM--GDASL 187
           +KP +GGSS+GI  +   + +P  + +++S  H  +++IE  + G E+ CGV+   D +L
Sbjct: 189 VKPARGGSSIGISKVDSWRDLPAAIEEAAS--HDPKVIIEAMITGPEVECGVLEREDGTL 246

Query: 188 DVTEIAVPKS------DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241
             +  A+ +        FY ++ KY     +  +PA +  +  + VQ+LA   ++A+GC 
Sbjct: 247 VASSPAMLEGTDAGEEGFYGFDAKYLDDTVSATIPAPLDEETTRRVQQLAIETYRALGCT 306

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           G++R DF            EIN  PG TP+S++P+M    G S+ +LL  +V  A
Sbjct: 307 GLARVDFFVTDAG--PVLNEINTMPGFTPISMYPQMFLADGVSYADLLTTLVSGA 359


>gi|293401063|ref|ZP_06645208.1| D-alanine--D-alanine ligase (D-alanylalanine
           synthetase)(D-Ala-D-Ala ligase) [Erysipelotrichaceae
           bacterium 5_2_54FAA]
 gi|291306089|gb|EFE47333.1| D-alanine--D-alanine ligase (D-alanylalanine
           synthetase)(D-Ala-D-Ala ligase) [Erysipelotrichaceae
           bacterium 5_2_54FAA]
          Length = 354

 Score =  290 bits (742), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 94/351 (26%), Positives = 151/351 (43%), Gaps = 54/351 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           +AV+ GG SSE  VSL S  +   +L    +++  I + +                    
Sbjct: 6   LAVIFGGKSSEYPVSLHSAASLIRSLHKDKYELIFIGISKDGEWFAYDGDVDAIEHDTWM 65

Query: 47  ---------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPY 79
                                        L  D  F VLHG  GEDG +Q + EL  IPY
Sbjct: 66  DGNITPCVLSCSTAQKGFLKLKEDGSYETLPVDCIFPVLHGKNGEDGTIQGLFELSGIPY 125

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--------MDSQHLISPPYVIK 131
                ++SA+ MDK  +  V+ + G+P  P + V             +++  +  P  IK
Sbjct: 126 VGCDHMSSAICMDKEMAHIVMENAGIPCAPYLCVYEDEHLDYRHIYEEAKAKLGLPIFIK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL---D 188
           P   GSS GI  I         +  +   +   ++++E  ++G E+ C VMG+  L    
Sbjct: 186 PANAGSSFGIHKIASFDDFEESMKDAFYHDGRGKVILETTIEGFEIGCAVMGNKELFAGS 245

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           V EI    + F+ YE KY  ++S    PA+I  ++++E + LA  A++A+ C+G++R D 
Sbjct: 246 VDEIETA-APFFDYEGKYQMVDSHIYCPARISKELFEEARSLALKAYRAMNCKGMTRVDM 304

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
              P  + +   E+N  PG T  S +P M   AG  F +LL  ++  A   
Sbjct: 305 FVTPQ-QSIVMNEVNTIPGFTDTSRYPTMMKEAGIEFGDLLDKLIAFALTR 354


>gi|169351724|ref|ZP_02868662.1| hypothetical protein CLOSPI_02505 [Clostridium spiroforme DSM 1552]
 gi|169291946|gb|EDS74079.1| hypothetical protein CLOSPI_02505 [Clostridium spiroforme DSM 1552]
          Length = 346

 Score =  290 bits (742), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 94/339 (27%), Positives = 162/339 (47%), Gaps = 47/339 (13%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL-VLAH------------- 48
           VL GG SSE  VS  S  +  + L    + ++ + +D       L H             
Sbjct: 7   VLCGGQSSEHIVSRMSCTSVLNNLNHDKYDITLVGIDLDGKWYRLNHDQDDLSLDSWLDN 66

Query: 49  -----------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSK 97
                       + D+AF VLHG +GEDG +Q + EL +IPY  + +L S++SMDK+ +K
Sbjct: 67  SVEVENVFELLKEHDVAFPVLHGLYGEDGTIQGLFELTKIPYVGARVLCSSVSMDKIYTK 126

Query: 98  QVVSSCGVPVCPSILVNRF--------TMDSQHL----------ISPPYVIKPLKGGSSL 139
           +++ +  +P   S  V +         T D + +          I  P  IK  + GSSL
Sbjct: 127 KILDTVKIPQVKSAYVKKRYDNRLVIITKDFEEIYDVEEYIVNEIGMPCFIKASRSGSSL 186

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA--VPKS 197
           G       + +   L   ++  +   +++E+ +D IEL   V+G+  + V+ +   +P  
Sbjct: 187 GCYRCDNREDLIGKL--EAAAKYDRHIVVEENIDCIELETAVLGNDDVIVSRVGQIMPHG 244

Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
           +FY++E KY    S   +PA +   I ++++  A  A +A+   G+SR DF  D  +  +
Sbjct: 245 EFYTFESKYEDAESKTCIPALVDEKIQEKIREYAIKAFKAVDGHGLSRVDFFLDKKTNNI 304

Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +  EIN  PG T +S++P++    G S+ +LL  ++E A
Sbjct: 305 YLNEINTMPGFTKISMYPQLMNDFGISYSDLLDKLIELA 343


>gi|55981556|ref|YP_144853.1| D-alanyl-alanine synthetase A [Thermus thermophilus HB8]
 gi|81363879|sp|Q5SHZ3|DDL_THET8 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|160286257|pdb|2YZM|A Chain A, Structure Of D-Alanine:d-Alanine Ligase With Substrate
           From Thermus Thermophilus Hb8
 gi|160286258|pdb|2YZM|B Chain B, Structure Of D-Alanine:d-Alanine Ligase With Substrate
           From Thermus Thermophilus Hb8
 gi|160286259|pdb|2YZM|C Chain C, Structure Of D-Alanine:d-Alanine Ligase With Substrate
           From Thermus Thermophilus Hb8
 gi|160286261|pdb|2YZN|A Chain A, Crystal Structure Of D-Alanine:d-Alanine Ligase With
           Amppnp From Thermus Thermophilus Hb8.
 gi|160286262|pdb|2YZN|B Chain B, Crystal Structure Of D-Alanine:d-Alanine Ligase With
           Amppnp From Thermus Thermophilus Hb8.
 gi|160286263|pdb|2YZN|C Chain C, Crystal Structure Of D-Alanine:d-Alanine Ligase With
           Amppnp From Thermus Thermophilus Hb8.
 gi|189096109|pdb|2ZDG|A Chain A, Crystal Structure Of D-Alanine:d-Alanine Ligase With Adp
           From Thermus Thermophius Hb8
 gi|189096110|pdb|2ZDG|B Chain B, Crystal Structure Of D-Alanine:d-Alanine Ligase With Adp
           From Thermus Thermophius Hb8
 gi|189096111|pdb|2ZDG|C Chain C, Crystal Structure Of D-Alanine:d-Alanine Ligase With Adp
           From Thermus Thermophius Hb8
 gi|189096112|pdb|2ZDG|D Chain D, Crystal Structure Of D-Alanine:d-Alanine Ligase With Adp
           From Thermus Thermophius Hb8
 gi|189096113|pdb|2ZDH|A Chain A, Crystal Structure Of D-Alanine:d-Alanine Ligase With Adp
           And D-Alanine From Thermus Thermophius Hb8
 gi|189096114|pdb|2ZDH|B Chain B, Crystal Structure Of D-Alanine:d-Alanine Ligase With Adp
           And D-Alanine From Thermus Thermophius Hb8
 gi|189096115|pdb|2ZDH|C Chain C, Crystal Structure Of D-Alanine:d-Alanine Ligase With Adp
           And D-Alanine From Thermus Thermophius Hb8
 gi|189096116|pdb|2ZDH|D Chain D, Crystal Structure Of D-Alanine:d-Alanine Ligase With Adp
           And D-Alanine From Thermus Thermophius Hb8
 gi|189096117|pdb|2ZDQ|A Chain A, Crystal Structure Of D-Alanine:d-Alanine Ligase With Atp
           And D-Alanine:d-Alanine From Thermus Thermophius Hb8
 gi|189096118|pdb|2ZDQ|B Chain B, Crystal Structure Of D-Alanine:d-Alanine Ligase With Atp
           And D-Alanine:d-Alanine From Thermus Thermophius Hb8
 gi|55772969|dbj|BAD71410.1| D-alanine--D-alanine ligase [Thermus thermophilus HB8]
 gi|74381947|emb|CAJ29881.1| D-alanine:D-alanine ligase [Thermus caldophilus]
          Length = 319

 Score =  290 bits (742), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 100/320 (31%), Positives = 161/320 (50%), Gaps = 33/320 (10%)

Query: 3   VLMGGISSEREVSLSSGKACA----------------------SALEDAGFKVSQIDVDR 40
           ++ GG+S E EVSL S +                          AL     K +  + + 
Sbjct: 5   LIAGGVSPEHEVSLLSAEGVLRHIPFPTDLAVIAQDGRWLLGEKALTALEAKAAP-EGEH 63

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
                L+  + D+ F +LHG FGEDG VQ  LELL  PY  +G+ ASAL MDK  SK+V+
Sbjct: 64  PFPPPLSWERYDVVFPLLHGRFGEDGTVQGFLELLGKPYVGAGVAASALCMDKDLSKRVL 123

Query: 101 SSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160
           +  GVPV P + V +          P + +KP   GSS+GI  +++ Q +   L    ++
Sbjct: 124 AQAGVPVVPWVAVRKGEPPVVPFDPP-FFVKPANTGSSVGISRVERFQDLEAALAL--AF 180

Query: 161 NHGDQLLIEQYVDG-IELTCGVMGD---ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216
            + ++ ++E+ +    EL  GV+G+    +  V E+   ++ FY YE KY+   +  ++P
Sbjct: 181 RYDEKAVVEKALSPVRELEVGVLGNVFGEASPVGEVRY-EAPFYDYETKYTPGRAELLIP 239

Query: 217 AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPE 276
           A +     + VQ LA  A++ +G RG++R DF       +++  E+N  PG TP S++P 
Sbjct: 240 APLDPGTQETVQELALKAYKVLGVRGMARVDFFL--AEGELYLNELNTIPGFTPTSMYPR 297

Query: 277 MAAYAGYSFRELLLWMVEDA 296
           +    G ++ ELL  +VE A
Sbjct: 298 LFEAGGVAYPELLRRLVELA 317


>gi|190359178|sp|Q5ZSA7|DDL_LEGPH RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
          Length = 364

 Score =  290 bits (742), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 80/345 (23%), Positives = 154/345 (44%), Gaps = 51/345 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSV------------------ 42
           + +L GG S E EVSL S  +    L+   + +  I +D+S                   
Sbjct: 7   LVLLYGGKSGEHEVSLVSAASVLKHLDSEKYHIIPIAMDKSGRFHRHDYNDLLACSDKLP 66

Query: 43  -----------GLVLAHLKPD--LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
                       L+   L  D  + F V+HG   EDG +Q +LEL  + Y    +L+SA+
Sbjct: 67  VVTEKSTPLEGLLINGRLAVDAKIVFPVVHGPLYEDGCLQGLLELAGVAYVGCDVLSSAI 126

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH---------LISPPYVIKPLKGGSSLG 140
            MDK  ++++    G+      L++     S+              P  +KP   GSS+G
Sbjct: 127 GMDKDMARRLACINGLKSARYKLLSWHANASERQQFCHEVASEFGWPLFVKPCSLGSSVG 186

Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD-------ASLDVTEIA 193
           I        +   +  +    + +++L+E+++ G E+   V+ +           V EI 
Sbjct: 187 IHKANNMDELNAAVADAL--RYDEEILVEEFIVGREIELAVLENSIPCGKPRVSMVGEIK 244

Query: 194 VPK-SDFYSYELKYSSLN-STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
           V     +YSY  KY   + +  ++PA++   + +++++ A      + C+G++R DF  +
Sbjct: 245 VNHPDGYYSYTAKYLESSQTDLIIPAQLNNSLEEQLKQAAANIFSYLKCKGMARVDFFVN 304

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             + ++++ EIN  PG T +S++P++    G ++ +LL  ++  A
Sbjct: 305 DKTEEIYFNEINTLPGFTSISMYPKLWQATGIAYPDLLDELINLA 349


>gi|125623230|ref|YP_001031713.1| D-alanyl-alanine synthetase A [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|166198487|sp|A2RI72|DDL_LACLM RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|124492038|emb|CAL96965.1| D-alanine-D-alanine ligase [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|300069981|gb|ADJ59381.1| D-alanyl-alanine synthetase A [Lactococcus lactis subsp. cremoris
           NZ9000]
          Length = 349

 Score =  290 bits (742), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 92/333 (27%), Positives = 150/333 (45%), Gaps = 42/333 (12%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD---------- 52
           +L GG S+EREVS+ S ++   A+  + F V    + +    +      D          
Sbjct: 8   LLYGGRSAEREVSVLSAESVMRAVNYSRFIVKTYFITKGGEFIKTQEFTDRPAEEEKLLT 67

Query: 53  --------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
                               + F VLHG  GEDG +Q  LE+L + Y    IL+++ +MD
Sbjct: 68  NDLAESYPKISPAAIYEKDAVVFPVLHGPMGEDGSIQGFLEILRLAYVGPNILSASSTMD 127

Query: 93  KMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           K+ +K V  + GVP  P +             +    +  P  +KP   GSS+GI  +  
Sbjct: 128 KLLAKHVFEAVGVPQVPYVAAFADENQVEIAQEVVEKLDFPVFVKPANMGSSVGISKVDD 187

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG---DASLDVTEIAVPKSDFYSYE 203
              +   L  S ++ + ++++IEQ VD  E+ C V+G   D S  +    V    FY Y 
Sbjct: 188 LADLQPAL--SEAYKYDNRVVIEQGVDAREIECAVLGNNSDVSATLPGEVVKDVGFYDYN 245

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            KY        +PAK+  D+ +++Q  A  A++A+   G+SR DF        V+  E+N
Sbjct: 246 SKYIDNKIQMDIPAKVSADLAQKIQEYAKKAYKAVNGAGLSRCDFFVTK-DGNVYLNEVN 304

Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             PG T  S++P +    G S+ +L+  +V+ A
Sbjct: 305 AIPGFTQWSMYPLLWENMGLSYSDLIEKLVDLA 337


>gi|114793805|pdb|2FB9|A Chain A, Crystal Structure Of The Apo Form Of D-Alanine: D-Alanine
           Ligase (Ddl) From Thermus Caldophilus: A Basis For The
           Substrate-Induced Conformational Changes
          Length = 322

 Score =  290 bits (742), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 100/320 (31%), Positives = 161/320 (50%), Gaps = 33/320 (10%)

Query: 3   VLMGGISSEREVSLSSGKACA----------------------SALEDAGFKVSQIDVDR 40
           ++ GG+S E EVSL S +                          AL     K +  + + 
Sbjct: 8   LIAGGVSPEHEVSLLSAEGVLRHIPFPTDLAVIAQDGRWLLGEKALTALEAKAAP-EGEH 66

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
                L+  + D+ F +LHG FGEDG VQ  LELL  PY  +G+ ASAL MDK  SK+V+
Sbjct: 67  PFPPPLSWERYDVVFPLLHGRFGEDGTVQGFLELLGKPYVGAGVAASALCMDKDLSKRVL 126

Query: 101 SSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160
           +  GVPV P + V +          P + +KP   GSS+GI  +++ Q +   L    ++
Sbjct: 127 AQAGVPVVPWVAVRKGEPPVVPFDPP-FFVKPANTGSSVGISRVERFQDLEAALAL--AF 183

Query: 161 NHGDQLLIEQYVDG-IELTCGVMGD---ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216
            + ++ ++E+ +    EL  GV+G+    +  V E+   ++ FY YE KY+   +  ++P
Sbjct: 184 RYDEKAVVEKALSPVRELEVGVLGNVFGEASPVGEVRY-EAPFYDYETKYTPGRAELLIP 242

Query: 217 AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPE 276
           A +     + VQ LA  A++ +G RG++R DF       +++  E+N  PG TP S++P 
Sbjct: 243 APLDPGTQETVQELALKAYKVLGVRGMARVDFFL--AEGELYLNELNTIPGFTPTSMYPR 300

Query: 277 MAAYAGYSFRELLLWMVEDA 296
           +    G ++ ELL  +VE A
Sbjct: 301 LFEAGGVAYPELLRRLVELA 320


>gi|281414117|ref|ZP_06245859.1| D-alanine--D-alanine ligase [Micrococcus luteus NCTC 2665]
          Length = 379

 Score =  289 bits (741), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 87/356 (24%), Positives = 146/356 (41%), Gaps = 65/356 (18%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL------------- 49
           +L GG SSE  +S  +      A +   + V  + V RS       L             
Sbjct: 19  LLFGGRSSEHPISCVTAAGVLHAADRQRWDVVPVGVARSGLWSHDELDVASFRLDGDALP 78

Query: 50  ------------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPY 79
                                           D+ F +LHG +GEDG +Q + E L +PY
Sbjct: 79  EVPEPKAPVSLRALPDGTVELTAADGSSLGPVDVVFPLLHGPWGEDGTLQGMFESLGLPY 138

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL--------ISPPYVIK 131
              G+LASA+ MDK   K    + G+ V P   +                  ++ P  +K
Sbjct: 139 VGCGVLASAVGMDKHFMKVAFQATGLQVGPWETITARDWARDPEAALARAGALAYPLFVK 198

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD------A 185
           P + GSS GI  + +   +   + ++  +    ++++E  + G E+ C V+         
Sbjct: 199 PARAGSSFGITRVTEPAGLRAAVEEARRF--DPKVVVEAGIVGREIECAVLDGHGAAAPR 256

Query: 186 SLDVTEIAVPKSD----FYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           +    EI V   +    FY +E KY  +  +    PA++P +  + ++ LA  A +A+  
Sbjct: 257 ASLPGEIVVAHDEGETQFYDFESKYQDTGTTQLSCPAELPEEEIERLRALAIRAFEAVDG 316

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            G+ R DF F P   +    EIN  PG TP+S++P M    G S+ +L+  +++ A
Sbjct: 317 SGLGRCDFFFTP-DGRWVVNEINTMPGFTPISMYPAMWERTGLSYDDLISELLDLA 371


>gi|282853666|ref|ZP_06263003.1| D-ala D-ala ligase N-terminal domain protein [Propionibacterium
           acnes J139]
 gi|282583119|gb|EFB88499.1| D-ala D-ala ligase N-terminal domain protein [Propionibacterium
           acnes J139]
          Length = 365

 Score =  289 bits (741), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 96/354 (27%), Positives = 151/354 (42%), Gaps = 62/354 (17%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV----------------------- 38
           AV+ GG+SSE  +S  S     +A++   F VS + +                       
Sbjct: 7   AVIFGGMSSEHSISCLSAANVVAAIDAERFDVSGVGISPQGIWVRYGADEILALPGTGQL 66

Query: 39  ------DRSVG----------LVLAHLKPD---LAFNVLHGNFGEDGLVQAILELLEIPY 79
                 DR +           +V      D   + F VLHG FGEDG +Q +LE+  + Y
Sbjct: 67  PTVEMGDRPLVSVKQMPEGTCIVDTEGNVDAVQVVFPVLHGPFGEDGTIQGLLEMAGVRY 126

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--------DSQHLISPPYVIK 131
              G+ ASA  MDK  +K ++S  GV V P ++V              +   +  P  +K
Sbjct: 127 VGCGVAASANCMDKHLTKMILSEAGVLVGPYVVVRDHEWREDRNAVLKAASRLEYPLFVK 186

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P +GGSS+GI  +   + +   +    +  H  ++LIEQ + G E+ C V+         
Sbjct: 187 PARGGSSIGISRVTSPEHLETAI--EMAREHDSKVLIEQGIRGREIECSVIDGRHGAAPR 244

Query: 192 IAVPK-------SDFYSYELKYSSL--NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            +VP          FY +E KY S    ++    A +     + VQ +A  A Q +GC G
Sbjct: 245 ASVPGEIVVHDPDGFYDFEAKYLSGEQKASVQAHANLDDVTRRRVQEVAIKAFQVLGCEG 304

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           ++R D    P    V+  E N  PG T  S FP M   +G ++ +++  ++E A
Sbjct: 305 LARIDTFVTP-DGAVYVNEPNTMPGFTRSSGFPLMWQASGMTYAQIVSELIELA 357


>gi|259500836|ref|ZP_05743738.1| D-alanine-D-alanine ligase A [Lactobacillus iners DSM 13335]
 gi|259167530|gb|EEW52025.1| D-alanine-D-alanine ligase A [Lactobacillus iners DSM 13335]
          Length = 366

 Score =  289 bits (741), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 91/342 (26%), Positives = 162/342 (47%), Gaps = 49/342 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------DRSVGLVLA----- 47
           + ++ GG SSE EVS+ SG+    A++   + V  + +        D     VL      
Sbjct: 13  VGLIFGGNSSEYEVSIISGRNIYKAIDKEKYDVYPMWITNTGFLASDADSRKVLEDPSYQ 72

Query: 48  ------------------HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
                               + D+ F ++HGN GEDG +Q +L +L+ P+    +LA+A+
Sbjct: 73  IENPHNVTNISNVIELSCRPEIDVFFPIVHGNLGEDGCLQGLLRILDKPFVGDDVLAAAI 132

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ-----------HLISPPYVIKPLKGGSS 138
           +MDK  +K +    GVPV   I + RF  +               +     +KP   GSS
Sbjct: 133 TMDKELNKIMAQRAGVPVADWISIKRFEYNDAKNEKLSYDYVSQKLGTDLFVKPSNQGSS 192

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVP 195
           +GI  +         L  + ++ + D++L+E+ + G E+   V+G+    V+   +I   
Sbjct: 193 VGISHVTSASDYKAAL--AEAFKYDDKVLVEETIKGTEVETAVLGNDDAIVSGVGQITNA 250

Query: 196 KSDFYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
           +  +YSYE KY+  +++ +  PA +P +I + V+R A   + A  C G++R D +     
Sbjct: 251 QGSWYSYENKYNDNSTSKLQIPAALPSEIIETVRRQALKVYHATECSGLARVDSMLS-SD 309

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            KV + E+N  PG T +S++P++    G S+ EL+  ++  A
Sbjct: 310 NKVIFNELNSLPGFTNISMYPKLFEQVGISYTELITKLLNYA 351


>gi|302190711|ref|ZP_07266965.1| D-alanyl-alanine synthetase A [Lactobacillus iners AB-1]
 gi|312874986|ref|ZP_07735005.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus iners
           LEAF 2053A-b]
 gi|311089731|gb|EFQ48156.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus iners
           LEAF 2053A-b]
          Length = 360

 Score =  289 bits (741), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 91/342 (26%), Positives = 162/342 (47%), Gaps = 49/342 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------DRSVGLVLA----- 47
           + ++ GG SSE EVS+ SG+    A++   + V  + +        D     VL      
Sbjct: 7   VGLIFGGNSSEYEVSIISGRNIYKAIDKEKYDVYPMWITNTGFLASDADSRKVLEDPSYQ 66

Query: 48  ------------------HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
                               + D+ F ++HGN GEDG +Q +L +L+ P+    +LA+A+
Sbjct: 67  IENPHNVTNISNVIELSCRPEIDVFFPIVHGNLGEDGCLQGLLRILDKPFVGDDVLAAAI 126

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ-----------HLISPPYVIKPLKGGSS 138
           +MDK  +K +    GVPV   I + RF  +               +     +KP   GSS
Sbjct: 127 TMDKELNKIMAQRAGVPVADWISIKRFEYNDAKNEKLSYDYVSQKLGTDLFVKPSNQGSS 186

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVP 195
           +GI  +         L  + ++ + D++L+E+ + G E+   V+G+    V+   +I   
Sbjct: 187 VGISHVTSASDYKAAL--AEAFKYDDKVLVEETIKGTEVETAVLGNDDAIVSGVGQITNA 244

Query: 196 KSDFYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
           +  +YSYE KY+  +++ +  PA +P +I + V+R A   + A  C G++R D +     
Sbjct: 245 QGSWYSYENKYNDNSTSKLQIPAALPSEIIETVRRQALKVYHATECSGLARVDSMLS-SD 303

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            KV + E+N  PG T +S++P++    G S+ EL+  ++  A
Sbjct: 304 NKVIFNELNSLPGFTNISMYPKLFEQVGISYTELITKLLNYA 345


>gi|160915858|ref|ZP_02078066.1| hypothetical protein EUBDOL_01880 [Eubacterium dolichum DSM 3991]
 gi|158432334|gb|EDP10623.1| hypothetical protein EUBDOL_01880 [Eubacterium dolichum DSM 3991]
          Length = 354

 Score =  289 bits (741), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 89/348 (25%), Positives = 151/348 (43%), Gaps = 53/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           +AV+ GG SSE  VSL S  +    L    + +  + + +     +              
Sbjct: 6   LAVIFGGQSSEYAVSLHSAGSLIRKLHKERYDLLLVGITKDGKWYIYDGDVESIEHDTWL 65

Query: 47  ----------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIP 78
                                         +  D  F VLHG  GEDG +Q + EL  IP
Sbjct: 66  QDASTCPCVLSCSTANHGFLKLCSDGSYEEIPVDCIFPVLHGKNGEDGTIQGLFELSGIP 125

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--------MDSQHLISPPYVI 130
           Y   G ++S++ MDK  +  V+ +  VP  P + V             +++  +  P  I
Sbjct: 126 YVGCGHMSSSICMDKEMTHIVLENAKVPCAPYLCVYEEKDMDYEAVYQEAKAKLGLPIFI 185

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190
           KP   GSS GI  +   +     L  +   +   ++++E  ++G E+ C VMG+  L   
Sbjct: 186 KPANAGSSYGISKLDSFEGFEAALKDAFYHDGKGKVILETTIEGFEIGCAVMGNRELFAG 245

Query: 191 EIAVPKS--DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
            +   ++   F+ YE KY  ++S    PA+I  ++ +E + LA  A++A+ C+G++R D 
Sbjct: 246 NVDEIETSLPFFDYEGKYQMVDSHIYCPARISKELIEEARTLALRAYKALNCKGMTRVDM 305

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              P   ++   E+N  PG T  S +P M   AG +F +L+  +V+ A
Sbjct: 306 FKTP-DDQILINEVNTIPGFTDTSRYPTMMKEAGIAFSDLIDRLVDLA 352


>gi|6634589|emb|CAB64483.1| D-ala,D-ala ligase [Streptococcus pneumoniae]
          Length = 347

 Score =  289 bits (741), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 93/334 (27%), Positives = 159/334 (47%), Gaps = 41/334 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQ------------------------- 35
           + +L GG S+EREVS+ S ++   A+    F V                           
Sbjct: 5   IILLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDFIKTQEFSQTPGQEDRL 64

Query: 36  -----IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
                ID D+ V     + +  + F VLHG  GEDG VQ  LE+L++PY    IL+S+L+
Sbjct: 65  MTNATIDWDKQVAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLA 124

Query: 91  MDKMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLISPPYVIKPLKGGSSLGIIVI 144
           MDK+ +K+V+ S G+   P + +           + +  ++ P   KP   GSS+GI   
Sbjct: 125 MDKITTKRVLESAGIAQVPYVAIVEGDDLTAKIAEVEEKLTYPVFTKPSNMGSSVGISKS 184

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202
           +  + +   L    ++ +  ++L+EQ V+  E+  G++G+  +  T     V    FY Y
Sbjct: 185 ENQEELRQALKL--AFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDY 242

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
           + KY     T  +PAKI  D+   +++ A  A +AIG  G+SR +F +     ++   ++
Sbjct: 243 DAKYIDNKITMDIPAKISDDVVPIMRQNAKTAFRAIGGLGLSRCNFFYTDK-GEISLNKL 301

Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           N  PG T  S++P +      S+ +L+  +V+ A
Sbjct: 302 NTMPGFTQWSMYPLLWDNMRISYPDLIERLVDLA 335


>gi|284031545|ref|YP_003381476.1| D-alanine/D-alanine ligase [Kribbella flavida DSM 17836]
 gi|283810838|gb|ADB32677.1| D-alanine/D-alanine ligase [Kribbella flavida DSM 17836]
          Length = 342

 Score =  289 bits (741), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 95/340 (27%), Positives = 150/340 (44%), Gaps = 46/340 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           + +L GG+S E  +SL S +  A +L+   ++   + + R    +L              
Sbjct: 3   IGILFGGVSEEHPISLKSAREVARSLDPERYEPYYVGITRGGAWMLCDGPDDDWENGTGR 62

Query: 47  ---------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
                                  ++ D+   VLHG  GEDG +Q +LEL  IPY    I 
Sbjct: 63  PAVLSPDRTVHGLLVLEQGRYETIRLDVVLPVLHGRLGEDGAIQGLLELSGIPYVGCDIP 122

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145
           +SAL MDK  +  V  S G+       V    +     ++ P  +KP + GSS G+  + 
Sbjct: 123 SSALCMDKSLAYVVARSAGIATPNFWTVAAKELPDAD-LTYPVFVKPARSGSSFGVSKVT 181

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYS 201
           +   +P  +  +S   +  ++LIEQ V G E+ C V+G+       +V  IA+    F  
Sbjct: 182 QADDLPSAVEVAS--QYDSKVLIEQAVVGREIGCAVLGNGGDLVVGEVDHIALSHGFFRI 239

Query: 202 Y---ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
           +   E +  S NST ++PA IP      V+  A   ++A+GC G++R D         V 
Sbjct: 240 HQESEPESGSDNSTAIVPADIPAASRTLVRDTAKAVYRALGCGGLARVDLFLTE-DGAVV 298

Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
             E+N  PG+T  S +P M A AG S  E++  +V  A  
Sbjct: 299 LNEVNTLPGLTSYSRYPRMMAAAGLSMGEVIDRVVSLALT 338


>gi|291087283|ref|ZP_06571884.1| D-alanine--D-alanine ligase A [Clostridium sp. M62/1]
 gi|291075677|gb|EFE13041.1| D-alanine--D-alanine ligase A [Clostridium sp. M62/1]
          Length = 368

 Score =  289 bits (741), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 91/343 (26%), Positives = 151/343 (44%), Gaps = 53/343 (15%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV----------------- 45
           V+ GG SSE  VS  S     + ++   + V  + +      +                 
Sbjct: 22  VVFGGQSSEHIVSCMSAVNVINHIDREKYDVVIVGITEEGKWLYVDSVESIRDESWRDKS 81

Query: 46  ---------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84
                                +  +  D+AF VLHG +GEDG +Q + EL  +PY   G+
Sbjct: 82  VRAVFSPDATEKCVLIERESGVEKVPVDVAFPVLHGLYGEDGTIQGLFELARLPYVGCGV 141

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--------SQHLISPPYVIKPLKGG 136
           LASA+SMDK+ +K V  + GV     + V R  +          +   S P  IKP   G
Sbjct: 142 LASAVSMDKLYTKIVADTLGVRQAAYVPVMRGELSHMESVTERVEKYFSYPVFIKPSNAG 201

Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK 196
           SS G+        +   L +++   H  ++L+E+ + G E+ C V G  + +V    V +
Sbjct: 202 SSRGVSKASDRSELENGLREAA--KHDRKILVEEMIVGREVECAVFGGGNGEVISSGVGE 259

Query: 197 ----SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
               +DFY ++ KY +  S  V+  ++P D  ++V+  A     A+   G++R DF    
Sbjct: 260 ILAAADFYDFDAKYYNEESRTVVNPELPGDAAEKVREAARRIFTAVDGYGMARVDFFVTE 319

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
              +V + EIN  PG T +S++P +   AG    EL+  ++E+
Sbjct: 320 Q-GEVVFNEINTIPGFTAISMYPMLFEAAGVDKTELVTRLIEN 361


>gi|158321878|ref|YP_001514385.1| D-alanine--D-alanine ligase [Alkaliphilus oremlandii OhILAs]
 gi|158142077|gb|ABW20389.1| D-alanine--D-alanine ligase [Alkaliphilus oremlandii OhILAs]
          Length = 349

 Score =  289 bits (741), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 93/343 (27%), Positives = 163/343 (47%), Gaps = 53/343 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           +AV+ GG SSE EVSL S  A    L+   + V +I + R    +               
Sbjct: 6   VAVIFGGESSEYEVSLKSASAVMENLDIEKYDVIKIGITRDGKWLRYNGTLDKIKENTWF 65

Query: 46  --------------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPY 79
                                       H + D+ F VLHG  GEDG +Q + E+  IPY
Sbjct: 66  LDGSCRQIMLSPNKGDRKIIEIHPNEFVHTQIDIVFPVLHGRNGEDGTLQGLFEITGIPY 125

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ-----HLISPPYVIKPLK 134
               + AS++ +DK  + ++V   G  V  SI ++  T + +       +  P  +KP +
Sbjct: 126 VGCDVAASSICIDKDYAHKIVQYAGFDVPQSIAIDNRTKEDEINKFAENVGYPIYVKPSR 185

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---E 191
            GSS+GI   +    +   +   ++     ++++E+ ++G E+ C ++G+  L V    E
Sbjct: 186 EGSSIGITKAENHSDLMGGI--EAALKLDGKVVLEENIEGFEVGCAILGNDDLIVGTVDE 243

Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
           I VP + F+ +  KY+  NS   LPA+I  D+ + ++ +    ++A+GC G+SR D   D
Sbjct: 244 IEVP-NGFFDFTEKYTLQNSKIHLPARIDQDLSERIKEIGKGIYKALGCSGLSRVDLFVD 302

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             + ++ + E+N  PG T  S FP M  +AG ++R++L  +++
Sbjct: 303 K-NHRIVFNEVNTLPGFTTGSRFPNMLLHAGIAYRDILDKLID 344


>gi|295115202|emb|CBL36049.1| D-alanine--D-alanine ligase [butyrate-producing bacterium SM4/1]
          Length = 368

 Score =  289 bits (741), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 91/343 (26%), Positives = 151/343 (44%), Gaps = 53/343 (15%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV----------------- 45
           V+ GG SSE  VS  S     + ++   + V  + +      +                 
Sbjct: 22  VVFGGQSSEHIVSCMSAVNVINHIDREKYDVVIVGITEEGKWLYVDSVESIRDESWRDKS 81

Query: 46  ---------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84
                                +  +  D+AF VLHG +GEDG +Q + EL  +PY   G+
Sbjct: 82  VGAVFSPDATEKCVLIERERGVEKVPVDVAFPVLHGLYGEDGTIQGLFELARLPYVGCGV 141

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--------SQHLISPPYVIKPLKGG 136
           LASA+SMDK+ +K V  + GV     + V R  +          +   S P  IKP   G
Sbjct: 142 LASAVSMDKLYTKIVADTLGVRQAAYVPVMRGELSHMESVTERVEKHFSYPVFIKPSNAG 201

Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK 196
           SS G+        +   L +++   H  ++L+E+ + G E+ C V G  + +V    V +
Sbjct: 202 SSRGVSKASDRSELENGLREAA--KHDRKILVEEMIVGREVECAVFGGGNGEVIASGVGE 259

Query: 197 ----SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
               +DFY ++ KY +  S  V+  ++P D  ++V+  A     A+   G++R DF    
Sbjct: 260 ILAAADFYDFDAKYYNEESRTVVNPELPGDAAEKVREAARRIFTAVDGYGMARVDFFVTE 319

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
              +V + EIN  PG T +S++P +   AG    EL+  ++E+
Sbjct: 320 Q-GEVVFNEINTIPGFTAISMYPMLFEAAGVDKTELVTRLIEN 361


>gi|295092630|emb|CBK78737.1| D-alanine--D-alanine ligase [Clostridium cf. saccharolyticum K10]
          Length = 368

 Score =  289 bits (741), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 91/343 (26%), Positives = 151/343 (44%), Gaps = 53/343 (15%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV----------------- 45
           V+ GG SSE  VS  S     + ++   + V  + +      +                 
Sbjct: 22  VVFGGQSSEHIVSCMSAVNVINHIDREKYDVVIVGITEEGKWLYVDSVESIRDESWRDKS 81

Query: 46  ---------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84
                                +  +  D+AF VLHG +GEDG +Q + EL  +PY   G+
Sbjct: 82  VGAVFSPDATEKCVLIERESGVEKVPVDVAFPVLHGLYGEDGTIQGLFELARLPYVGCGV 141

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--------SQHLISPPYVIKPLKGG 136
           LASA+SMDK+ +K V  + GV     + V R  +          +   S P  IKP   G
Sbjct: 142 LASAVSMDKLYTKIVADTLGVRQAAYVPVMRGELSHMESVTERVEKHFSYPVFIKPSNAG 201

Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK 196
           SS G+        +   L +++   H  ++L+E+ + G E+ C V G  + +V    V +
Sbjct: 202 SSRGVSKASDRSELENGLREAA--KHDRKILVEEMIVGREVECAVFGGGNGEVIASGVGE 259

Query: 197 ----SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
               +DFY ++ KY +  S  V+  ++P D  ++V+  A     A+   G++R DF    
Sbjct: 260 ILAAADFYDFDAKYYNEESRTVVNPELPGDAAEKVREAARRIFTAVDGYGMARVDFFVTE 319

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
              +V + EIN  PG T +S++P +   AG    EL+  ++E+
Sbjct: 320 Q-GEVVFNEINTIPGFTAISMYPMLFEAAGVDKTELVTRLIEN 361


>gi|254967023|gb|ACT97547.1| putative D-alanine-D-alanine ligase [uncultured organism]
          Length = 354

 Score =  289 bits (741), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 92/346 (26%), Positives = 153/346 (44%), Gaps = 53/346 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           +AVL GG SSE  VS  S       ++   + +  I +      +L              
Sbjct: 6   IAVLFGGQSSEHVVSCMSAANVIDQIDKDKYDLLLIGITEEGEWILTPSVEEIRNDTWRD 65

Query: 47  ------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
                                     ++ D+ F VLHG  GEDG VQ +LEL  IPY   
Sbjct: 66  GRTHAVLSPDATRKCVIISEGDATKEVRVDVVFPVLHGLRGEDGTVQGLLELARIPYVGC 125

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--------QHLISPPYVIKPLK 134
           G+LASA+SMDK+ +K +V S G+     + V R  +          ++ +S P  +KP  
Sbjct: 126 GVLASAVSMDKLYTKLIVDSLGIRQADYVPVRRSQLQDMNSVIASVENKLSYPVFVKPSN 185

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194
            GSS G+      + +   L +++   H  ++L+E+ + G E+ C V G    +V    V
Sbjct: 186 AGSSRGVNKADNREELVFALNEAA--KHDRKILVEETIIGHEVECAVFGGGLQEVKASGV 243

Query: 195 PK----SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
            +    ++FY ++ KY +  S  V+  ++P    ++ ++ A    +A+   G+SR DF  
Sbjct: 244 GEIMAAAEFYDFDAKYYNAESKTVVDPELPGHAAEDEKKAAVEIFKAVDGYGLSRVDFFV 303

Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                +V + EIN  PG T +S++P +    G S   L+  ++  A
Sbjct: 304 TDA-GEVVFNEINTLPGFTAISMYPMLWEARGISKSRLVDDLINHA 348


>gi|238853210|ref|ZP_04643596.1| D-alanine--D-alanine ligase [Lactobacillus gasseri 202-4]
 gi|282852441|ref|ZP_06261783.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus gasseri
           224-1]
 gi|311111376|ref|ZP_07712773.1| D-alanine--D-alanine ligase [Lactobacillus gasseri MV-22]
 gi|190359189|sp|Q046V3|DDL_LACGA RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|238834185|gb|EEQ26436.1| D-alanine--D-alanine ligase [Lactobacillus gasseri 202-4]
 gi|282556183|gb|EFB61803.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus gasseri
           224-1]
 gi|311066530|gb|EFQ46870.1| D-alanine--D-alanine ligase [Lactobacillus gasseri MV-22]
          Length = 361

 Score =  289 bits (741), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 92/342 (26%), Positives = 161/342 (47%), Gaps = 48/342 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------DRSVGLVLAHLK-- 50
           + ++ GG SSE EVS+ S       ++   F V  + +        D     VL + K  
Sbjct: 7   VGLIFGGNSSEYEVSIMSAHNIYEEIDTNKFDVYPMWITNDGYLANDADSRKVLDNPKME 66

Query: 51  ---------------------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
                                 D+ F ++HGN GEDG +Q +  +L+ P+    +LA+A+
Sbjct: 67  VANPHKVANISNIVELKDRPEIDVFFPIVHGNLGEDGCLQGLFRVLDKPFVGDDVLAAAV 126

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH-----------LISPPYVIKPLKGGSS 138
           +MDK  +K +    GVPV   I V RF  +               +     +KP   GSS
Sbjct: 127 TMDKEMTKILAQRAGVPVAKWIAVKRFEYNDPDNNKLDYEYVASQLGSDLFVKPSNQGSS 186

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL---DVTEIAVP 195
           +G+  +  ++   + L  + ++ + D++L+E+ V G E+   V+G+       V +I   
Sbjct: 187 VGVSHVTNEKEYKVAL--AEAFKYDDKVLVEETVHGTEVETAVLGNDKPIVAGVGQIINA 244

Query: 196 KSDFYSYELKYSSLN-STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
           K  FY+YE KY   + ST  +PAK+P  I ++V++ A    QA  C G++R D +     
Sbjct: 245 KDSFYTYENKYDDNSTSTLEIPAKLPEGIVEKVRKNALKVFQATECSGLARIDSMLRTED 304

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           ++V   E+N  PG T +S++P++    G  + +L+  +++ A
Sbjct: 305 KEVVLTEVNALPGFTNISMYPKLFEEVGIPYTDLITKLIDYA 346


>gi|227889052|ref|ZP_04006857.1| D-alanine-D-alanine ligase [Lactobacillus johnsonii ATCC 33200]
 gi|227850281|gb|EEJ60367.1| D-alanine-D-alanine ligase [Lactobacillus johnsonii ATCC 33200]
          Length = 375

 Score =  289 bits (741), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 92/342 (26%), Positives = 159/342 (46%), Gaps = 48/342 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------DRSVGLVLAHLK-- 50
           + ++ GG SSE EVS+ S       ++   F V  + +        D     VL + K  
Sbjct: 21  IGLIFGGNSSEYEVSIMSAHNIYEEIDTNKFDVYPMWITNDGYLADDADSRKVLDNPKME 80

Query: 51  ---------------------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
                                 D+ F ++HGN GEDG +Q +  +L+ P+    +LA+A+
Sbjct: 81  VANPHKVANISNIIELKDRPEIDVFFPIVHGNLGEDGCLQGLFRVLDKPFVGDDVLAAAV 140

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH-----------LISPPYVIKPLKGGSS 138
           +MDK  +K +    GVPV   I V RF  +               +     +KP   GSS
Sbjct: 141 TMDKEMTKILAQRAGVPVAKWIAVKRFEYNDPDNEKLDYEYVASQLGSDLFVKPSNQGSS 200

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL---DVTEIAVP 195
           +G+  +  ++   + L  + ++ + D++L+E+ V G E+   V+G+       V +I   
Sbjct: 201 VGVSHVTNEKEYKVAL--AEAFKYDDKVLVEETVHGTEVETAVLGNDKPIVAGVGQIINA 258

Query: 196 KSDFYSYELKYSSLN-STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
           K  FY+YE KY   + ST  +PAK+P  I + V++ A    QA  C G++R D +     
Sbjct: 259 KDSFYTYENKYDDDSTSTLEIPAKLPEGIVETVRKNALKVFQATECSGLARIDSMLRSED 318

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            +V   E+N  PG T +S++P++    G  + +L+  +++ A
Sbjct: 319 NEVVLTEVNALPGFTNISMYPKLFEEIGIPYTDLITKLIDYA 360


>gi|154500220|ref|ZP_02038258.1| hypothetical protein BACCAP_03884 [Bacteroides capillosus ATCC
           29799]
 gi|150270952|gb|EDM98226.1| hypothetical protein BACCAP_03884 [Bacteroides capillosus ATCC
           29799]
          Length = 350

 Score =  289 bits (741), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 110/349 (31%), Positives = 164/349 (46%), Gaps = 54/349 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50
           + VL GG+S ER VSLS+G   A AL   G +V+ +D+   V    A L           
Sbjct: 3   IVVLAGGLSPERNVSLSTGTMVAEALTSLGHEVALVDMYFGVKEKGAELSGLFGAPISEE 62

Query: 51  ------------------------------------PDLAFNVLHGNFGEDGLVQAILEL 74
                                                DL F  LHG+ GEDG VQA  +L
Sbjct: 63  HKRVSRQAPDLAAVKASRTEGGDSMFGPGVLELCGMADLVFLALHGSCGEDGRVQAAFDL 122

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS---PPYVIK 131
           + IPYT SG L SA++MDK  +K++V+   V       V+    D   L+     P V+K
Sbjct: 123 MGIPYTGSGYLGSAIAMDKDLTKRMVADV-VSTPGWKTVSYTADDIDGLVETARLPLVVK 181

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P+  GSS+G+ +    + +   L +  +   G + ++EQYV G EL   ++ D +L   E
Sbjct: 182 PVASGSSIGVSIAHTAEELRTALTEGLAL--GGRTVLEQYVKGRELQVAILEDKALPSIE 239

Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
           I +PK  FY YE KY    +  V PA I  +  ++++  A   ++ +G    SR+DF+ D
Sbjct: 240 I-IPKQGFYDYENKYQPGAAEEVCPADISPEAEQKLRDAAVRVYETLGLAVYSRADFILD 298

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
               + ++LEIN  PGMTP S+ P+ AA  G  +  L   +V+ +   R
Sbjct: 299 A-DGEPWFLEINTLPGMTPTSLVPQEAAAVGIDYNTLCQRIVDASLAAR 346


>gi|302384965|ref|YP_003820787.1| D-alanine/D-alanine ligase [Clostridium saccharolyticum WM1]
 gi|302195593|gb|ADL03164.1| D-alanine/D-alanine ligase [Clostridium saccharolyticum WM1]
          Length = 354

 Score =  289 bits (741), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 95/345 (27%), Positives = 152/345 (44%), Gaps = 53/345 (15%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------- 48
            VL GG SSE  VS  S     + ++   ++V+ I +      +                
Sbjct: 7   VVLFGGQSSEHIVSCMSVVNVINHIDREKYEVALIGITEEGRWIKTDSVEDIETGTWKNG 66

Query: 49  -------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                    LK D+ F VLHG  GEDG VQ +LEL  IPY   G
Sbjct: 67  TVSAVISPDATMGGIILLDGEKTEVLKADVVFPVLHGLLGEDGTVQGLLELARIPYVGCG 126

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--------QHLISPPYVIKPLKG 135
           +L+SA+SMDK+ +K +V   GV     + V R  +          +   S P  +KP   
Sbjct: 127 VLSSAVSMDKLYTKIIVDDLGVTQAAYVPVMRHDLKDMDLVVGKVEERFSYPVFVKPSNA 186

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195
           GSS G+   +  + +   L +++   H  ++L+E+ + G E+ C V G  +L      V 
Sbjct: 187 GSSKGVSRAEDRKELMEALTEAAV--HDRKILVEEMIVGREIECAVFGGGNLPAEASGVG 244

Query: 196 K----SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
           +    ++FY ++ KY + +S  V+   +P    + V+  A    QA+   G++R DF   
Sbjct: 245 EILAAAEFYDFDAKYYNSDSRTVVDPVLPEGAAERVKEAAKAIFQAVDGYGLARVDFFV- 303

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                V + EIN  PG T +S++P +   AG +  EL+  ++E A
Sbjct: 304 KEDGSVVFNEINTMPGFTAISMYPMLWEAAGMNKDELVGRLMEHA 348


>gi|227891078|ref|ZP_04008883.1| D-alanine--D-alanine ligase [Lactobacillus salivarius ATCC 11741]
 gi|227866952|gb|EEJ74373.1| D-alanine--D-alanine ligase [Lactobacillus salivarius ATCC 11741]
          Length = 382

 Score =  289 bits (741), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 94/345 (27%), Positives = 165/345 (47%), Gaps = 52/345 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI------------------------ 36
           +A+L GG SSE +VS  S      AL+   + VS                          
Sbjct: 12  IALLFGGNSSEHDVSKRSAHNIYDALDKDKYDVSVFMFTKKGFLLGNKDSMRIFDGENED 71

Query: 37  --------DVDRSVGLV----LAHLK-PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                   DVD S  L     LA +K  D+ + V+HGN GEDG VQ +  LL  P+  SG
Sbjct: 72  DVVAEVIKDVDFSNPLANIQNLAEVKDVDVFYPVIHGNMGEDGTVQGLFRLLNKPWIGSG 131

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVIKPLKGGS 137
           + +S +S DK  +K++++  G+     +LV                +     +KP + GS
Sbjct: 132 VTSSGVSFDKDLTKKLLTLNGIRNTKYVLVTPENKADYPYAKVAEELGETLFVKPARQGS 191

Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVT---EIA 193
           S+GI  ++ ++     L     +++  ++L+E+ +    E+ C V+G+  +  +    I 
Sbjct: 192 SVGIHKVRNEEEYNAALEDGFKYDY--KILVEEAIKNPREVECSVLGNRDIKASKLGAIR 249

Query: 194 VPK-SDFYSYELKYSSLNS-THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
           +P+  DFY Y  K+   +     +P K+P  + KE+Q+++  A +A+  RG++R DFL D
Sbjct: 250 IPESDDFYDYNNKFVDASGVVFEMPIKLPEKLTKEIQQMSLDAFRALDNRGLARMDFLVD 309

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                 ++ E+N  PG T +S++P++   +G S+ EL+  +++ A
Sbjct: 310 END-VPYFGEVNTLPGFTNISLYPQLWEVSGISYSELIDQLIQLA 353


>gi|319937766|ref|ZP_08012169.1| D-alanine-D-alanine ligase B [Coprobacillus sp. 29_1]
 gi|319807201|gb|EFW03815.1| D-alanine-D-alanine ligase B [Coprobacillus sp. 29_1]
          Length = 345

 Score =  289 bits (741), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 85/339 (25%), Positives = 162/339 (47%), Gaps = 47/339 (13%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD---------- 52
           ++ GG S+E  +S  S  +    +    + ++   +++     + +   D          
Sbjct: 6   IICGGQSTEHIISRMSCTSVLKNINKEKYDITLAGIEKDGTWYILNQTQDDLVNDSWLEG 65

Query: 53  ---------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSK 97
                          + + VLHG +GEDG +Q +LEL E+PY    +L S+++MDK+ +K
Sbjct: 66  AVKVEDVYGLLRQQEVVYPVLHGMYGEDGTIQGLLELAEVPYVGCKVLGSSVAMDKIYTK 125

Query: 98  QVVSSCGVPVCPSILVNRF------------------TMDSQHLISPPYVIKPLKGGSSL 139
           +++ + G+P   S+ V +                       +  +  P  IK    GSS+
Sbjct: 126 KILETVGIPQVKSLYVKKRYDGTLVVVDNTFDESADIADSVEKELRYPCFIKASNSGSSV 185

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA--VPKS 197
           G   + +++ +   L +++ ++   +++IE+ VD IEL   V+G+    V+ +   +P  
Sbjct: 186 GCYRVDEEKELMPRLEEAAQYDR--KIVIEECVDCIELETAVLGNDDPIVSRVGQIMPHG 243

Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
            FY++E KY    S   +PA +   I +E++  A    +AI   G+SR DF  D  + KV
Sbjct: 244 VFYTFESKYEDEESKTCIPALVDEKIQEEIRNYALKVFKAIDGHGLSRVDFFLDKKTNKV 303

Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +  EIN  PG T +S++P++ A  G ++ +L+  ++E A
Sbjct: 304 YLNEINTMPGFTKISMYPQLMADFGITYSDLIDKLIELA 342


>gi|162660760|gb|EDQ48523.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 265

 Score =  289 bits (741), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 87/268 (32%), Positives = 137/268 (51%), Gaps = 9/268 (3%)

Query: 17  SSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLE 76
            SG     AL   G      D        L     D  F  LHG +GEDG VQ  LELL 
Sbjct: 1   MSGTGVLKALLSHGVDAHAFDPAERDLGELKKEGFDRCFIALHGRYGEDGTVQGALELLG 60

Query: 77  IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--FTMDSQHLISPPYVIKPLK 134
           IPYT  G++AS+++MDK+ +K++    G+P     LV     T  +   +  P ++KP +
Sbjct: 61  IPYTGPGVMASSIAMDKIMTKRIWRFEGLPTPDWRLVASAGETRAALQALGAPMIVKPSR 120

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVT 190
            GS++G+  +   +      + +S   +  ++L E++++G E TC V+G      +L V 
Sbjct: 121 EGSTIGLTKVWTAEECEQAYVLAS--RYDPEVLCEEFIEGDETTCPVLGTGEGAHALPVI 178

Query: 191 EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
            I  P+ + Y Y+ KY + ++ +  P+ +P +   E++R+   A + +GCRG SR+D + 
Sbjct: 179 RIVAPEGN-YDYQNKYFTDDTKYHCPSGLPAEEEAEIRRIVVRAFRTLGCRGWSRADIMI 237

Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMA 278
               RK F LEIN  PGMT  S+ P  A
Sbjct: 238 RASDRKPFLLEINTSPGMTGHSLVPMSA 265


>gi|330721446|gb|EGG99500.1| D-alanine--D-alanine ligase [gamma proteobacterium IMCC2047]
          Length = 297

 Score =  289 bits (741), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 87/300 (29%), Positives = 153/300 (51%), Gaps = 10/300 (3%)

Query: 5   MGGISSEREVSLSSGKACASALEDAGFKVSQIDV-----DRSVGLVLAHLKPDLAFNVLH 59
           MGG ++ER++SL SGKA  SAL  AG     ID        S+   L+    D  FN++H
Sbjct: 1   MGGRAAERDISLVSGKAVLSALLAAGVDAFAIDAFGPEGTDSLIEQLSAQPVDTVFNMVH 60

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G  GE+G +  +L  + +P T S + ASAL+M+K + K +     +P     +++  +  
Sbjct: 61  GGEGENGSIPCLLAAMNLPVTGSAMAASALAMNKSQCKFLWQGMALPTARFQVLSAESDW 120

Query: 120 SQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            Q    +  P ++KP   GSS+G+  + + + +     ++    +   ++ E ++ G E 
Sbjct: 121 QQVVDDLGLPLMVKPGSEGSSIGMSKVDRVEDLKAAYEEAV--QYDQTVIAESWITGGEY 178

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           T G++    L   ++   + +FY Y+ KY   ++ +++P  +  +  + +Q +A  A  +
Sbjct: 179 TVGIIKGQPLPGIKLETAR-EFYDYQAKYVDDDTQYLIPCGLSPEKEQAMQAIALRAFDS 237

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           +GCRG  R D + D    +   LE+N  PGMT  S+ P  AA  G SF  L+L ++  A+
Sbjct: 238 LGCRGWGRVDLMLDEARDEFLVLEVNTIPGMTDHSLVPMAAASIGLSFDALVLQILSTAN 297


>gi|297564289|ref|YP_003683262.1| D-alanine/D-alanine ligase [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
 gi|296848738|gb|ADH70756.1| D-alanine/D-alanine ligase [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
          Length = 350

 Score =  289 bits (741), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 90/347 (25%), Positives = 160/347 (46%), Gaps = 53/347 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           +AV+ GG + E +VS +S  +  + L+   ++V  + + R+   V               
Sbjct: 8   VAVVFGGRNGEYDVSCASAMSVLTHLDRDRYEVVPVRITRAGAWVVGTDTDDPAALDAER 67

Query: 46  ------------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81
                                   LA  + D+ F V+HG +GEDG +Q +LELL +PY  
Sbjct: 68  LTALTPEPGGERERRPGDGLGEAILALGEADVVFPVIHGPYGEDGTIQGMLELLGVPYVG 127

Query: 82  SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD----SQHLISPPYVIKPLKGGS 137
           +G+LASA  MDK  +K ++ + G+PV   +++     +     +  +  P  +KP + GS
Sbjct: 128 NGVLASATGMDKATTKTLLRAAGLPVARDVVLRGPDDEVSPQERAELGLPVFVKPARSGS 187

Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG--DASL---DVTEI 192
           SLG+  +     +   +  +  +    ++L+E+ V G E+   V+   D +L      EI
Sbjct: 188 SLGVTRVGDWSELEAAVKTAREF--DTKVLVEEAVVGREVDLAVLELPDGALKVGPPLEI 245

Query: 193 AVPKSD-FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
            V  ++ F+ Y+ KY   ++   +PA +P+ I  ++  LA    +A+GC G+ R DF   
Sbjct: 246 RVADTERFFDYDTKYG-GDAVFDIPADLPVGIQTQLSDLALGVFEAVGCSGLLRVDFFLR 304

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
               +    E+N  PG T  S +P++    G  + ELL  ++  A  
Sbjct: 305 G-GTEPVVNEVNTLPGFTAHSQYPQIWRATGLEYPELLDSLIRTALA 350


>gi|158312982|ref|YP_001505490.1| D-alanyl-alanine synthetase A [Frankia sp. EAN1pec]
 gi|158108387|gb|ABW10584.1| D-alanine--D-alanine ligase [Frankia sp. EAN1pec]
          Length = 367

 Score =  289 bits (741), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 95/353 (26%), Positives = 158/353 (44%), Gaps = 60/353 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD--------------------- 39
           + +L GG S+E  +S  S      AL+ + + V  + +D                     
Sbjct: 10  LVLLFGGRSTEHSISCVSAGGVLRALDRSRYDVIPVGIDTEGRWAVLPDDSPALAPVGTD 69

Query: 40  -------------------------RSVGLVLAHLKP-DLAFNVLHGNFGEDGLVQAILE 73
                                          L  L P D+ F +LHG FGEDG +Q +LE
Sbjct: 70  LPIVDASAGLAVTLPPSPSAAPVVVHDPSAALRDLGPVDVVFPLLHGPFGEDGTIQGLLE 129

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ---HLISPPYVI 130
           +  +PY  SG+ ASA +MDK   K ++++ G+PV P  ++      S+     +  P  +
Sbjct: 130 MAGLPYVGSGVFASAAAMDKQHMKSMLAAAGLPVGPYAVLRPGQALSEPDRERLGLPVFV 189

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG------- 183
           KP +GGSS+GI  +     +   L  + +     + L+E  V G E+ CGV+        
Sbjct: 190 KPARGGSSIGISRVDAWADLDTALKTARA--SDPKTLVEAAVVGREIECGVLDSLDGSGP 247

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
            AS+         + FY +E KY S  +   +PA++P ++ + V+  A  A +A+ C G+
Sbjct: 248 QASVPAEVTITSSAGFYDFEAKYLSDGAVFDVPARLPGELTERVRAAAVAAFEALDCAGL 307

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +R D    P   ++   E+N  PG TP+S++P M A +G  +  L+  +V+ A
Sbjct: 308 ARVDMFVTPS-GEIVLNEVNTMPGFTPMSMYPRMWAASGIDYAALVDRLVQLA 359


>gi|2738587|gb|AAC46067.1| D-alanine: D-alanine ligase [Buchnera aphidicola]
          Length = 306

 Score =  289 bits (740), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 99/303 (32%), Positives = 163/303 (53%), Gaps = 13/303 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GGI SER++S+ SG A   +L  +GF    ID      + L     D A+  LHG
Sbjct: 5   IAVLLGGILSERKISIKSGYAILQSLLRSGFNAYAIDTRDFPIMQLKKQGFDSAYIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117
             GEDG +Q ILE L IPYT SGI++SA+S+DK R+K +  S  + V P I + +     
Sbjct: 65  TGGEDGSIQGILEYLNIPYTGSGIMSSAISLDKWRTKLLWKSLSLRVLPDIYLQKKDISK 124

Query: 118 ------MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +     +  P VIKP   GSS+GI ++     +   +  + ++N+ + ++IE++
Sbjct: 125 YTYSYILKKILKLKFPVVIKPNNAGSSIGITIVNHPDLLIDSI--NLAFNYSNNIIIEKF 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++    L   +I   K++FY Y  KY   ++ ++ P+ +     +E++++ 
Sbjct: 183 LKGTEYTVSILNKKVLPPIKIIT-KNNFYDYSSKYIESSTEYICPSGLNYQKEEELKKIV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
            +A  ++GC+G  R D + D    K + LEIN  PGMT  S+ P  +     SF  L+L 
Sbjct: 242 EIAWNSLGCKGCGRIDAILDNKD-KFWLLEINTIPGMTHRSLVPMASKKYRISFVNLILK 300

Query: 292 MVE 294
           +++
Sbjct: 301 ILK 303


>gi|315302237|ref|ZP_07873149.1| D-alanine--D-alanine ligase [Listeria ivanovii FSL F6-596]
 gi|313629387|gb|EFR97608.1| D-alanine--D-alanine ligase [Listeria ivanovii FSL F6-596]
          Length = 370

 Score =  289 bits (740), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 87/351 (24%), Positives = 156/351 (44%), Gaps = 60/351 (17%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---LAHLKPD------- 52
           +L GG S+E EVSL +  +  +AL+   F+   I +      +   L   K D       
Sbjct: 7   LLYGGKSAEHEVSLQTAFSVINALDLNKFEAQPIYITNEGEWIQGPLLSGKLDFVEQLRF 66

Query: 53  ---------------------------------LAFNVLHGNFGEDGLVQAILELLEIPY 79
                                            + F +LHG  GEDG VQ + E+L IPY
Sbjct: 67  AAADKVELALVETEKSAGELISPAVLEADGQETVVFPLLHGPNGEDGTVQGLFEVLNIPY 126

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVI 130
             +G+LAS+ +MDK+  K++ +   +P  P++ V              + + ++  P  +
Sbjct: 127 VGNGVLASSAAMDKIVMKKIFADAAIPQVPAVAVRLIDWKNFQDEMVTEMEEVLEYPVFV 186

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--D 188
           KP   GSS+GI      Q +   +  + ++ +  ++++EQ V   E+  GV+G+ +    
Sbjct: 187 KPANLGSSVGISKATNKQELTEAM--TEAFLYDRRVVVEQGVIAREIEMGVLGNDTPICS 244

Query: 189 VTEIAVPKS---DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
           V    +P+     FY Y+ KY   N+  ++P ++  +I  +++  A  A   +   G+ R
Sbjct: 245 VPGEILPEGAVAKFYDYKAKYQDNNTALIIPTEVEPEILAQMKEYAIQAFLGLDASGLVR 304

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +DF       ++F  E+N  PG TP S++P +    G  +  L+  +V+ A
Sbjct: 305 ADFFLT-DDNQLFLNEVNTMPGFTPYSMYPLLWQETGLPYPALIERLVDLA 354


>gi|332828689|gb|EGK01381.1| D-alanine-D-alanine ligase [Dysgonomonas gadei ATCC BAA-286]
          Length = 327

 Score =  289 bits (740), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 92/324 (28%), Positives = 159/324 (49%), Gaps = 35/324 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLA------------- 47
           +A++ GG SSE  VS  S     S L+   + + ++ + R    V A             
Sbjct: 5   IAIVWGGYSSEIVVSEKSMSGVYSFLDKEKYNIHKVRIVRESWTVDADGVTYPVDKNDFS 64

Query: 48  --------HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
                   ++K D AF ++HG  GEDG +Q   ++L IPY+  G++AS+L+M+K      
Sbjct: 65  FTYPEKGMNIKFDFAFIIIHGTPGEDGRLQGYFDMLNIPYSTCGMMASSLTMNKFVCNNF 124

Query: 100 VSSCGVPVCPSILVNRFT----MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
           + + G+ V  S+ +N+ T     D    +  P  +KP  GGSS     +K  + +   + 
Sbjct: 125 LKNFGIRVADSLYLNKDTRCSIDDIAAKLGFPMFVKPNTGGSSFATTKVKSIEQLQKAID 184

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNS 211
              ++    +++IE ++ G E+TCG       +    +TE+  P ++F++YE KY     
Sbjct: 185 I--AFGETPEVIIESFISGQEVTCGCYKIKGKEVVFPITEVVTP-NEFFNYEAKYE-GQV 240

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271
             + PA+IP ++  E+QRL    +  +G +GI R DF+        + LE+N  PGMT  
Sbjct: 241 EEITPARIPDEMTNEIQRLTRRIYDMVGAKGIIRVDFII--SDNMPYLLEVNTVPGMTQT 298

Query: 272 SIFPEMAAYAGYSFRELLLWMVED 295
           S  P+  A AG +  ++L  ++E+
Sbjct: 299 SFIPQQVAAAGLNITDVLTEIIEN 322


>gi|229829654|ref|ZP_04455723.1| hypothetical protein GCWU000342_01751 [Shuttleworthia satelles DSM
           14600]
 gi|229791643|gb|EEP27757.1| hypothetical protein GCWU000342_01751 [Shuttleworthia satelles DSM
           14600]
          Length = 368

 Score =  289 bits (740), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 105/344 (30%), Positives = 161/344 (46%), Gaps = 55/344 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------------------- 38
           + VL GG+S+ER+VS  SG   A AL   G +V  +DV                      
Sbjct: 20  IVVLAGGLSTERDVSFKSGDMVARALRRKGHQVLLLDVFMGYGDAECDISDIFDRAEEVS 79

Query: 39  ---------DRSVGLVLAHLK-----------------PDLAFNVLHGNFGEDGLVQAIL 72
                       +  + A  K                  D+ F  LHG  GE+G VQA  
Sbjct: 80  VRVEDIPKTAPDIAAIRAGRKDQSKTFFGPNVIAICQAADIVFMALHGADGENGKVQAAF 139

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFTMDSQHLISPPYV 129
           +L  I YT +  L  A++MDK  +K   ++ G+P    I +    R     +  I  P V
Sbjct: 140 DLFGIQYTGNSYLPCAIAMDKGVAKTFFTAYGIPTPSGITLEKEERQDAAKKAKIHYPCV 199

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           +KP  GGSS+G+ +++    +   L ++  W   D+++IE+Y+ G E + GVM D  L V
Sbjct: 200 VKPACGGSSVGVTIVEDPGRLEEALDEAFYWE--DEVVIEEYIKGREFSVGVMEDQVLPV 257

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
            EIA  +  FY ++ KY++ ++    PA +P +  + +Q+ A    +A+G    SR DFL
Sbjct: 258 IEIAPIR-GFYDFKNKYAAGSAVETCPADLPQETSRLMQKYAADVCKALGLTTYSRQDFL 316

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            D   R +F LE N  PGMTP S+ P+  A  G S+ +L   ++
Sbjct: 317 LDESGR-IFCLEANTLPGMTPTSLLPQEEAVLGMSYDDLCEEII 359


>gi|332664669|ref|YP_004447457.1| D-alanine--D-alanine ligase [Haliscomenobacter hydrossis DSM 1100]
 gi|332333483|gb|AEE50584.1| D-alanine--D-alanine ligase [Haliscomenobacter hydrossis DSM 1100]
          Length = 329

 Score =  289 bits (740), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 94/320 (29%), Positives = 160/320 (50%), Gaps = 30/320 (9%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-----------------DRSVG 43
           +A+L GG  +ER VSL S +     L D  ++   I++                 D S+ 
Sbjct: 4   VAILTGGNVAERSVSLKSAETVRKHLNDQKYEKYVIELNGTQFTEQGTGTVVNLNDFSLP 63

Query: 44  LVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103
               ++K DL + +LHG+  EDG +Q   E+L IPYT   +++SA++ +K   K  + S 
Sbjct: 64  TPNGNIKFDLVYQMLHGHPAEDGCLQGYFEVLGIPYTGCDVMSSAITFNKQACKDFLRSH 123

Query: 104 GVPVCPSILVNRFT---MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160
            +P+ PS ++ +           +  P  +KP K GSS G   +     +        ++
Sbjct: 124 NIPMAPSKVLRKGEAINWAELEAMGVPVFVKPNKNGSSYGASKVNTPDQL--AGAIEHAF 181

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216
            + D++++E ++ G E + GV+        L +TEI VP ++F+ ++ KY    S  + P
Sbjct: 182 VYDDEVVVEGFLKGTEFSNGVLRRNGEVVVLPITEI-VPHNEFFDFKAKYE-NQSQEITP 239

Query: 217 AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPE 276
           A++  +   +VQ    L ++A+GCRGI R D++   +    F+LE N  PGM+  SI P+
Sbjct: 240 ARLTPEQTAQVQAQTKLIYEAVGCRGICRFDYIL--VGDTFFFLEANTIPGMSEQSIVPQ 297

Query: 277 MAAYAGYSFRELLLWMVEDA 296
            A   G+S  ELL   V++A
Sbjct: 298 QARAHGWSITELLDAAVDEA 317


>gi|29375431|ref|NP_814585.1| D-alanine--D-alanine ligase [Enterococcus faecalis V583]
 gi|30179787|sp|Q47758|DDL_ENTFA RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|29342891|gb|AAO80655.1| D-alanine--D-alanine ligase [Enterococcus faecalis V583]
          Length = 348

 Score =  289 bits (740), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 81/344 (23%), Positives = 152/344 (44%), Gaps = 51/344 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---LAHLKPD----- 52
           + +L GG S E +VS+ S  +  +A+    ++V  + + +    V   L   +P      
Sbjct: 3   IILLYGGRSEEHDVSVLSAYSVLNAIYYKYYQVQLVFISKDGQWVKGPLLSERPQNKEVL 62

Query: 53  -----------------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                        + F VLHG  GEDG +Q  +E + +PY  +G
Sbjct: 63  HLTWAQTPEETGEFSGKRISPSEIYEEEAIVFPVLHGPNGEDGTIQGFMETINMPYVGAG 122

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPLK 134
           +LASA +MDK+ +K ++ + G+P  P + V R              +  +  P  +KP  
Sbjct: 123 VLASANAMDKIMTKYLLQTVGIPQVPFVPVLRSDWKGNPKEVFEKCEGSLIYPVFVKPAN 182

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI-- 192
            GSS+GI  ++  + +        ++ +  + ++EQ ++  E+   ++G+  +  T    
Sbjct: 183 MGSSVGISKVENREELQE--ALEEAFRYDARAIVEQGIEAREIEVAILGNEDVRTTLPGE 240

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            V    FY Y+ KY +      +PA +P ++  + Q  A  A+  +   G+SR DF    
Sbjct: 241 VVKDVAFYDYDAKYINNTIEMQIPAHVPEEVAHQAQEYAKKAYIMLDGSGLSRCDFFLTS 300

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              ++F  E+N  PG T  S++P +    G  + +L+  +++ A
Sbjct: 301 K-NELFLNELNTMPGFTDFSMYPLLWENMGLKYSDLIEELIQLA 343


>gi|227894248|ref|ZP_04012053.1| D-alanine-D-alanine ligase [Lactobacillus ultunensis DSM 16047]
 gi|227863968|gb|EEJ71389.1| D-alanine-D-alanine ligase [Lactobacillus ultunensis DSM 16047]
          Length = 360

 Score =  289 bits (740), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 89/340 (26%), Positives = 152/340 (44%), Gaps = 49/340 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           + ++ GG SSE EVS+ SG     A++   F V  I +                      
Sbjct: 7   VGLIFGGNSSEYEVSIVSGHNIYKAIDKEKFDVHPIWITNEGYFADEKESFKVLEDPSYQ 66

Query: 52  ----------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
                                 D+ F ++HGN GEDG++Q +  L+  P+    +LA+A+
Sbjct: 67  VKNPHKVHNISNLIELENLPEIDVFFPIVHGNLGEDGVLQGLFRLMNKPFVGDDVLAAAV 126

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-----------QHLISPPYVIKPLKGGSS 138
           +MDK  +K +    GVPV   I + RF  +               +     +KP   GSS
Sbjct: 127 TMDKEFTKILAQRVGVPVADWISIKRFEYNDKNNDKLDYEKVAEKLGRDMFVKPSNQGSS 186

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL---DVTEIAVP 195
           +G+  +         L +  ++ + D++L+E+ V G E+   V+G+       V +I   
Sbjct: 187 VGVSHVTNAAEYTAALKE--AFKYDDKVLVEETVPGTEVETAVLGNDKPIVAGVGQITNA 244

Query: 196 KSDFYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
           K  FY+YE KY   +++ +  PA +P +I   V+  A   ++   C G++R D +  P  
Sbjct: 245 KGSFYTYENKYDDNSTSKLQIPADLPKEIIDTVRANARKVYEVTECSGMARIDSMLTP-G 303

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            KV   E+N  PG T +S++P++   AG  + EL+  ++E
Sbjct: 304 GKVVLTEVNALPGFTNISMYPKLFEEAGVPYTELITRLIE 343


>gi|222153385|ref|YP_002562562.1| D-alanine--D-alanine ligase [Streptococcus uberis 0140J]
 gi|254767741|sp|B9DUS0|DDL_STRU0 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|222114198|emb|CAR42743.1| D-alanine--D-alanine ligase [Streptococcus uberis 0140J]
          Length = 348

 Score =  289 bits (740), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 90/334 (26%), Positives = 157/334 (47%), Gaps = 41/334 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------------------- 38
           + +L GG S+EREVS+ S ++   A+    F V    +                      
Sbjct: 6   IVLLYGGRSAEREVSVLSAESVMRAINYDKFHVKTYFISQAGDFYKTQEFTVQPSESEKL 65

Query: 39  ------DRSVGLVLAHLKPD--LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
                 D S+ +  + +  D  + F +LHG  GEDG +Q  LE+L++PY  + IL+S+++
Sbjct: 66  MTNASLDASLKIKASDIYEDKAVVFPLLHGPMGEDGSIQGFLEILKMPYVGTNILSSSVA 125

Query: 91  MDKMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
           MDK+ +K+V+ S G+P     +      +     ++   +S P  +KP   GSS+GI   
Sbjct: 126 MDKITTKRVLESAGIPQVNYTVYIEGNDLEDCITETLETLSFPIFVKPANMGSSVGISKA 185

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202
           +  + +   +  +    +  ++LIEQ V   E+  G++G+  +  T     +    FY Y
Sbjct: 186 ESIEGLREAIALAL--KYDSRILIEQGVVAREIEVGLLGNTKVASTLPGEVIKDVAFYDY 243

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
           + KY     +  +PA I   I  +++  A  A +AIG  G+SR DF        ++  E+
Sbjct: 244 QAKYIDNKISMAIPATIDEGITSQMRYFAEQAFKAIGACGLSRCDFFL-AEDGNLYLNEL 302

Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           N  PG T  S++P +    G S+ +L+  +V  A
Sbjct: 303 NTMPGFTQWSMYPLLWDNMGLSYSDLIEELVSLA 336


>gi|54298601|ref|YP_124970.1| D-alanyl-alanine synthetase A [Legionella pneumophila str. Paris]
 gi|148358653|ref|YP_001249860.1| D-alanine-D-alanine ligase A [Legionella pneumophila str. Corby]
 gi|296108257|ref|YP_003619958.1| D-alanine-D-alanine ligase [Legionella pneumophila 2300/99 Alcoy]
 gi|81369792|sp|Q5X1S8|DDL_LEGPA RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|166198489|sp|A5IAW4|DDL_LEGPC RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|53752386|emb|CAH13818.1| D-alanine--D-alanine ligase A [Legionella pneumophila str. Paris]
 gi|148280426|gb|ABQ54514.1| D-alanine-D-alanine ligase A [Legionella pneumophila str. Corby]
 gi|295650159|gb|ADG26006.1| D-alanine-D-alanine ligase [Legionella pneumophila 2300/99 Alcoy]
          Length = 364

 Score =  289 bits (740), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 79/345 (22%), Positives = 155/345 (44%), Gaps = 51/345 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS-----------------VG 43
           + +L GG S E EVSL S  +    L+   + +  I +D+S                 + 
Sbjct: 7   LVLLYGGKSGEHEVSLVSAASVLKHLDSEKYHIIPIAMDKSGRFHRHDYNDLLACSDKLP 66

Query: 44  LVLAHLKP--------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
           +V     P              ++ F V+HG   EDG +Q +LEL  + Y    +L+SA+
Sbjct: 67  VVTEKSTPLEGLLINGRLAVDAEIVFPVVHGPLYEDGCLQGLLELAGVAYVGCDVLSSAI 126

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH---------LISPPYVIKPLKGGSSLG 140
            MDK  ++++    G+      L++     S+              P  +KP   GSS+G
Sbjct: 127 GMDKDMARRLACINGLKSARYKLLSWHANASERQQFCHEVASEFGWPLFVKPCSLGSSVG 186

Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD-------ASLDVTEIA 193
           I        +   +  +    + +++L+E+++ G E+   V+ +           V EI 
Sbjct: 187 IHKANNMDELNAAVADAL--RYDEEILVEEFIVGREIELAVLENSIPCGKPRVSMVGEIK 244

Query: 194 VPK-SDFYSYELKYSSLN-STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
           V     +YSY  KY   + +  ++PA++   + +++++ A      + C+G++R DF  +
Sbjct: 245 VNHPDGYYSYTAKYLESSQTDLIIPAQLNNSLEEQLKQAAANIFSYLKCKGMARVDFFVN 304

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             + ++++ EIN  PG T +S++P++    G ++ +LL  ++  A
Sbjct: 305 DKTEEIYFNEINTLPGFTSISMYPKLWQATGVAYPDLLDELINLA 349


>gi|148543712|ref|YP_001271082.1| D-alanyl-alanine synthetase A [Lactobacillus reuteri DSM 20016]
 gi|227363309|ref|ZP_03847439.1| D-alanine--D-alanine ligase [Lactobacillus reuteri MM2-3]
 gi|325682083|ref|ZP_08161601.1| D-alanine-D-alanine ligase [Lactobacillus reuteri MM4-1A]
 gi|190359177|sp|A5VIS1|DDL_LACRD RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|148530746|gb|ABQ82745.1| D-alanine--D-alanine ligase [Lactobacillus reuteri DSM 20016]
 gi|227071672|gb|EEI09965.1| D-alanine--D-alanine ligase [Lactobacillus reuteri MM2-3]
 gi|324978727|gb|EGC15676.1| D-alanine-D-alanine ligase [Lactobacillus reuteri MM4-1A]
          Length = 378

 Score =  289 bits (740), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 93/343 (27%), Positives = 161/343 (46%), Gaps = 52/343 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI------------------------ 36
           +A+L GG SSE +VS  S      AL+   + VS                          
Sbjct: 7   IALLFGGNSSEHDVSKRSAHNIYDALDKEKYDVSLFMFTKDGILLGNEDSQKIFDGEPED 66

Query: 37  ----------DVDRSVGLVLA---HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                     D+   +  ++A     + D  F V+HGN GEDG +Q + +LL  PY  S 
Sbjct: 67  QVVAEAYQKMDMSSPLAPIMALNEQKEIDFFFPVIHGNLGEDGTIQGLFKLLNKPYVGSN 126

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVIKPLKGGS 137
           I ASA+S DK  +K+++S  G+   P ++V             +  +     +KP K GS
Sbjct: 127 IAASAMSFDKDLTKKIISQAGIRNTPYVVVTPENQADYSWGRIEEKLGNLTFVKPAKQGS 186

Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVT---EIA 193
           S+GI  +   +     L  +  +++  ++L+EQ + +  E+   ++G+     +    + 
Sbjct: 187 SVGIHRVTNAEEYEKALDDAFKYDY--KILVEQGIANPQEIEISILGNEHPIASKLGAVR 244

Query: 194 VPKSD-FYSYELKYSSLNS-THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
           VPK D FY YE K+   +     LP K+P  +  E+  +A  A++A+G +G++R DFL D
Sbjct: 245 VPKDDPFYDYENKFVDASGVVFELPVKLPQYLVDEITDMALKAYKALGMKGMARIDFLVD 304

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             +   +  E N  PG T +S++P+M   +G S+ +L+  +++
Sbjct: 305 -SNNVPYLGEPNTLPGFTNISLYPQMWEVSGISYSDLIDRLIQ 346


>gi|289522342|ref|ZP_06439196.1| D-alanine--D-alanine ligase B [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
 gi|289504178|gb|EFD25342.1| D-alanine--D-alanine ligase B [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
          Length = 316

 Score =  289 bits (740), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 104/310 (33%), Positives = 160/310 (51%), Gaps = 21/310 (6%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVS--QIDVDRSVGLVLAHLKPDLAFNVLHG 60
           VL GG S EREVSL+SGKA   A    GF V    ++  + V  ++     D+ F  LHG
Sbjct: 5   VLYGGDSPEREVSLASGKAVLEAASRCGFDVLDGCVETVKDVVRLMNERDCDVIFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118
           ++GEDG +QA L+  +IPYT SG  A  L+M+K+ SK      G+P    +  N F    
Sbjct: 65  SWGEDGRLQAFLDFYDIPYTGSGSEACMLAMNKVLSKYRFQRDGIPTPDGVEANLFQEGI 124

Query: 119 --DSQHLISP--------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168
               + ++            VIKP + GS+LG+ VI     +   +  +SS  +   ++ 
Sbjct: 125 NGACKKILEYYDYFLNGGKMVIKPARCGSTLGVSVITSSSDLYEAVQLASS--YDSLIIA 182

Query: 169 EQYVDGIELTCGVMGDA---SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
           E+Y+ G E+T  V  D    +  + EI VPK+  YSY+ KY+  NS + +PA++   I K
Sbjct: 183 ERYISGKEITVAVWDDGKPQAFPIIEI-VPKNSLYSYKAKYTPGNSAYFVPAQLEDSIAK 241

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285
           + Q  A +AH ++GC   SR D   D      + LE+N  PG+T  S+ P+ A   G+ F
Sbjct: 242 KAQEAALMAHISLGCELYSRVDMRLDTQGN-PYVLEVNTVPGLTSTSLVPKAAKAIGWDF 300

Query: 286 RELLLWMVED 295
              +  ++++
Sbjct: 301 DRFVKELIQN 310


>gi|148284350|ref|YP_001248440.1| D-alanine--D-alanine ligase [Orientia tsutsugamushi str. Boryong]
 gi|146739789|emb|CAM79664.1| D-alanine--D-alanine ligase [Orientia tsutsugamushi str. Boryong]
          Length = 291

 Score =  289 bits (740), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 98/294 (33%), Positives = 166/294 (56%), Gaps = 5/294 (1%)

Query: 8   ISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDL-AFNVLHGNFGEDG 66
           +S+EREVSL S     +AL   G++V++IDV + + + L+ + P    FN L G +GEDG
Sbjct: 1   MSAEREVSLMSNDNVQAALISNGYQVTRIDVGQDIAVKLSEITPPYTVFNCLVGTYGEDG 60

Query: 67  LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP 126
            +  +L ++ IPYTHSG+  SA + DK  +K ++    +    SI +N         I  
Sbjct: 61  CIPGLLNIMNIPYTHSGVKTSAAAFDKQIAKTILQCYKIKTPASITINSNDNVINDPILR 120

Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186
           PYVIKPL+ GSS+G+ ++  +      L +   +  G+++L+EQY+ G EL   ++    
Sbjct: 121 PYVIKPLQQGSSIGVKIVHLEDKF---LFKDYKFQFGNKVLVEQYIKGRELQVALLDGKV 177

Query: 187 LDVTEIAVPKSD-FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
           + + EI + K   FY Y+ KYS   + H++P ++P++   ++  +A   ++   CRG  R
Sbjct: 178 VGILEIKMLKDKIFYDYQSKYSPGFAEHIIPPRLPVNTVNQIMNIAEKVYKIFDCRGPCR 237

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
            + +   +  +V+ +E+N  PGMT +S +PE+A Y G SF EL+  ++  A C 
Sbjct: 238 LECILSDIDNEVYVIELNTHPGMTSLSSYPEIAQYYGISFNELVERILITAKCD 291


>gi|319941789|ref|ZP_08016111.1| D-alanine-D-alanine ligase [Sutterella wadsworthensis 3_1_45B]
 gi|319804722|gb|EFW01589.1| D-alanine-D-alanine ligase [Sutterella wadsworthensis 3_1_45B]
          Length = 319

 Score =  289 bits (740), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 101/308 (32%), Positives = 149/308 (48%), Gaps = 11/308 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VL GGISSEREVSL SG+    AL   G +V   D        L     D AF  LHG
Sbjct: 12  VVVLEGGISSEREVSLLSGRGVKEALASKGLEVESWDPAVDSVGGLEEGAYDAAFIALHG 71

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG VQ +L  + +PYT  G+ ASA++MDK  +K +  + G+ V   + +     D+
Sbjct: 72  TLGEDGSVQGLLNCIGLPYTGPGVTASAIAMDKELTKNIWRANGISVPAGVRLTAAASDA 131

Query: 121 Q------HLISPPYVIKPLKGGSSLGIIVIKKDQS---IPLDLLQSSSWNHGDQLLIEQY 171
           +         +   V+KP   GSS+G+  + +D          L +++     ++L+E+Y
Sbjct: 132 ELERAIAEFGADGVVVKPGHDGSSIGVTKLDRDALSLHSLRAALNAAAERDAAEVLVEEY 191

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++   +L V EI  P+   Y ++ KY +    +  PAK+P    K +    
Sbjct: 192 IHGREFTVAILDGKALPVIEICAPEGS-YDFQNKYYTDVVRYECPAKLPEASAKALAAAC 250

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A   +GCRG SR D   +        LEIN  PGMTP S+ P  A   G S+ +L L 
Sbjct: 251 EKAFAVLGCRGWSRVDA-LERADGTFALLEINTSPGMTPHSLVPMAARAVGLSYADLCLR 309

Query: 292 MVEDASCL 299
           ++  A   
Sbjct: 310 VLGLARTD 317


>gi|301300875|ref|ZP_07207047.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus
           salivarius ACS-116-V-Col5a]
 gi|300214754|gb|ADJ79170.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)
           (D-Ala-D-Ala ligase) [Lactobacillus salivarius CECT
           5713]
 gi|300851474|gb|EFK79186.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus
           salivarius ACS-116-V-Col5a]
          Length = 378

 Score =  289 bits (740), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 94/345 (27%), Positives = 165/345 (47%), Gaps = 52/345 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI------------------------ 36
           +A+L GG SSE +VS  S      AL+   + VS                          
Sbjct: 8   IALLFGGNSSEHDVSKRSAHNIYDALDKDKYDVSVFMFTKKGFLLGNKDSMRIFDGENED 67

Query: 37  --------DVDRSVGLV----LAHLK-PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                   DVD S  L     LA +K  D+ + V+HGN GEDG VQ +  LL  P+  SG
Sbjct: 68  DVVAEVIKDVDFSNPLANIQNLAEVKDVDVFYPVIHGNMGEDGTVQGLFRLLNKPWIGSG 127

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVIKPLKGGS 137
           + +S +S DK  +K++++  G+     +LV                +     +KP + GS
Sbjct: 128 VASSGVSFDKDLTKKLLTLNGIRNTKYVLVTPENKADYPYAKVAEELGETLFVKPARQGS 187

Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVT---EIA 193
           S+GI  ++ ++     L     +++  ++L+E+ +    E+ C V+G+  +  +    I 
Sbjct: 188 SVGIHKVRNEEEYNAALEDGFKYDY--KILVEEAIKNPREVECSVLGNRDIKASKLGAIR 245

Query: 194 VPK-SDFYSYELKYSSLNS-THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
           +P+  DFY Y  K+   +     +P K+P  + KE+Q+++  A +A+  RG++R DFL D
Sbjct: 246 IPESDDFYDYNNKFVDASGVVFEMPIKLPEKLTKEIQQMSLDAFRALDNRGLARMDFLVD 305

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                 ++ E+N  PG T +S++P++   +G S+ EL+  +++ A
Sbjct: 306 END-VPYFGEVNTLPGFTNISLYPQLWEVSGISYSELIDQLIQLA 349


>gi|40217779|gb|AAR82837.1| D-alanine,D-alanine ligase [Enterococcus faecium]
          Length = 333

 Score =  289 bits (740), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 89/332 (26%), Positives = 152/332 (45%), Gaps = 51/332 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV-------------LA 47
           + +L GG S+E EVS+ S  +  +A+    ++V  I + +    V             + 
Sbjct: 3   ITLLYGGRSAEHEVSILSAFSVLNAIYYNYYQVQLIFITKEGQWVKGPLLTEKPASKDVL 62

Query: 48  HLKPD------------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
           HL  D                        + F VLHG  GEDG +Q  LE L +PY  +G
Sbjct: 63  HLSWDPSGQTEEGFTGKVINPGEIKEEGAIVFPVLHGPNGEDGTIQGFLETLNMPYVGAG 122

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLK 134
           +L SA +MDK+ +K ++ + GVP  P + V +              +  +  P  +KP  
Sbjct: 123 VLTSACAMDKIMTKYILQAAGVPQVPYVPVLKNQWKENPKKVFDQCEGSLLYPMFVKPAN 182

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI-- 192
            GSS+GI   +  + +   L  ++++ +  + ++EQ ++  E+   V+G+  +  T    
Sbjct: 183 MGSSVGITKAENREELQNAL--ATAYQYDSRAIVEQGIEAREIEVAVLGNEDVRTTLPGE 240

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            V    FY YE KY +      +PA++P ++Y++ Q  A LA+  +G  G+SR DF    
Sbjct: 241 VVKDVAFYDYEAKYINNKIEMQIPAEVPEEVYQKAQEYAKLAYTMLGGSGLSRCDFFLTN 300

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
              ++F  E+N  PG T  S++P +    G  
Sbjct: 301 K-NELFLNELNSMPGFTEFSMYPTLMGKYGLE 331


>gi|284928951|ref|YP_003421473.1| D-alanine--D-alanine ligase [cyanobacterium UCYN-A]
 gi|284809410|gb|ADB95115.1| D-alanine--D-alanine ligase [cyanobacterium UCYN-A]
          Length = 350

 Score =  288 bits (739), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 95/346 (27%), Positives = 165/346 (47%), Gaps = 52/346 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDA----GFKVSQIDVDRSVGLVLAHL------- 49
           + +L GG S E  VS++S +A   AL+       + V  I + R+   +   +       
Sbjct: 5   IGLLFGGASEEHIVSINSARAILQALQIGNNLCKYNVIPIYIQRNGVWISGKIAEQVLQT 64

Query: 50  -------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84
                                    + D+ F VLHG  GEDG +Q +L++++ P+  + +
Sbjct: 65  KQALPLVLLKKEEKFQLWQFPTEVNQIDVWFPVLHGPNGEDGTIQGLLKMMQTPFVGTSV 124

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM------------DSQHLISPPYVIKP 132
           L SA+ MDK+  K + S  G P    + +    +            D +  +  P  IKP
Sbjct: 125 LGSAIGMDKIVMKTIFSQAGFPQVKYLTLEYSKLFSNAQYYSQLCNDIRTNLGYPCFIKP 184

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192
              GSS+G+  +     + + L  ++S  + ++++IE+ +   EL CGV+G+     + +
Sbjct: 185 ANLGSSVGVSKVSSHDELEIALKNAAS--YDNRIIIEEGIIARELECGVLGNDIPKASVV 242

Query: 193 AVP--KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
                +SDFY Y+ KY   +S   +PA++P  I +++Q++A  A   I  RG+SR DF +
Sbjct: 243 GEITFESDFYDYKAKYKDTSSKIHIPAQLPNHIIEKIQQMAINAFTTINGRGLSRVDFFY 302

Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              ++K+F  EIN  PG T  S++PE+    G  F EL+  ++E A
Sbjct: 303 IEGTQKIFINEINSFPGFTESSMYPELWIKTGLEFHELVDKLIELA 348


>gi|255971299|ref|ZP_05421885.1| D-alanine:D-alanine ligase [Enterococcus faecalis T1]
 gi|255973918|ref|ZP_05424504.1| D-alanine:D-alanine ligase [Enterococcus faecalis T2]
 gi|256617717|ref|ZP_05474563.1| D-alanine:D-alanine ligase [Enterococcus faecalis ATCC 4200]
 gi|256761603|ref|ZP_05502183.1| D-alanine:D-alanine ligase [Enterococcus faecalis T3]
 gi|256854307|ref|ZP_05559671.1| D-Ala ligase [Enterococcus faecalis T8]
 gi|256957295|ref|ZP_05561466.1| D-alanine:D-alanine ligase [Enterococcus faecalis DS5]
 gi|256959971|ref|ZP_05564142.1| D-alanine:D-alanine ligase [Enterococcus faecalis Merz96]
 gi|256964334|ref|ZP_05568505.1| D-alanine:D-alanine ligase [Enterococcus faecalis HIP11704]
 gi|257077731|ref|ZP_05572092.1| D-Ala-D-Ala ligase [Enterococcus faecalis JH1]
 gi|257086186|ref|ZP_05580547.1| D-alanine:D-alanine ligase [Enterococcus faecalis D6]
 gi|257089258|ref|ZP_05583619.1| D-alanine:D-alanine ligase [Enterococcus faecalis CH188]
 gi|257415411|ref|ZP_05592405.1| D-alanine:D-alanine ligase [Enterococcus faecalis AR01/DG]
 gi|293388801|ref|ZP_06633294.1| D-alanine--D-alanine ligase [Enterococcus faecalis S613]
 gi|294781259|ref|ZP_06746605.1| D-ala D-ala ligase N-terminal domain protein [Enterococcus faecalis
           PC1.1]
 gi|300859798|ref|ZP_07105886.1| D-ala D-ala ligase N-terminal domain protein [Enterococcus faecalis
           TUSoD Ef11]
 gi|307275147|ref|ZP_07556299.1| D-ala D-ala ligase [Enterococcus faecalis TX2134]
 gi|307278459|ref|ZP_07559534.1| D-ala D-ala ligase [Enterococcus faecalis TX0860]
 gi|307290780|ref|ZP_07570675.1| D-ala D-ala ligase [Enterococcus faecalis TX0411]
 gi|312901617|ref|ZP_07760888.1| D-ala D-ala ligase [Enterococcus faecalis TX0470]
 gi|312907062|ref|ZP_07766058.1| D-ala D-ala ligase [Enterococcus faecalis DAPTO 512]
 gi|312952886|ref|ZP_07771747.1| D-ala D-ala ligase [Enterococcus faecalis TX0102]
 gi|255962317|gb|EET94793.1| D-alanine:D-alanine ligase [Enterococcus faecalis T1]
 gi|255966790|gb|EET97412.1| D-alanine:D-alanine ligase [Enterococcus faecalis T2]
 gi|256597244|gb|EEU16420.1| D-alanine:D-alanine ligase [Enterococcus faecalis ATCC 4200]
 gi|256682854|gb|EEU22549.1| D-alanine:D-alanine ligase [Enterococcus faecalis T3]
 gi|256709867|gb|EEU24911.1| D-Ala ligase [Enterococcus faecalis T8]
 gi|256947791|gb|EEU64423.1| D-alanine:D-alanine ligase [Enterococcus faecalis DS5]
 gi|256950467|gb|EEU67099.1| D-alanine:D-alanine ligase [Enterococcus faecalis Merz96]
 gi|256954830|gb|EEU71462.1| D-alanine:D-alanine ligase [Enterococcus faecalis HIP11704]
 gi|256985761|gb|EEU73063.1| D-Ala-D-Ala ligase [Enterococcus faecalis JH1]
 gi|256994216|gb|EEU81518.1| D-alanine:D-alanine ligase [Enterococcus faecalis D6]
 gi|256998070|gb|EEU84590.1| D-alanine:D-alanine ligase [Enterococcus faecalis CH188]
 gi|257157239|gb|EEU87199.1| D-alanine:D-alanine ligase [Enterococcus faecalis ARO1/DG]
 gi|291081958|gb|EFE18921.1| D-alanine--D-alanine ligase [Enterococcus faecalis S613]
 gi|294451595|gb|EFG20051.1| D-ala D-ala ligase N-terminal domain protein [Enterococcus faecalis
           PC1.1]
 gi|300850616|gb|EFK78365.1| D-ala D-ala ligase N-terminal domain protein [Enterococcus faecalis
           TUSoD Ef11]
 gi|306498161|gb|EFM67683.1| D-ala D-ala ligase [Enterococcus faecalis TX0411]
 gi|306504965|gb|EFM74160.1| D-ala D-ala ligase [Enterococcus faecalis TX0860]
 gi|306508175|gb|EFM77293.1| D-ala D-ala ligase [Enterococcus faecalis TX2134]
 gi|310627047|gb|EFQ10330.1| D-ala D-ala ligase [Enterococcus faecalis DAPTO 512]
 gi|310629189|gb|EFQ12472.1| D-ala D-ala ligase [Enterococcus faecalis TX0102]
 gi|311291305|gb|EFQ69861.1| D-ala D-ala ligase [Enterococcus faecalis TX0470]
 gi|315029213|gb|EFT41145.1| D-ala D-ala ligase [Enterococcus faecalis TX4000]
 gi|315032372|gb|EFT44304.1| D-ala D-ala ligase [Enterococcus faecalis TX0017]
 gi|315145187|gb|EFT89203.1| D-ala D-ala ligase [Enterococcus faecalis TX2141]
 gi|315158766|gb|EFU02783.1| D-ala D-ala ligase [Enterococcus faecalis TX0312]
 gi|315163095|gb|EFU07112.1| D-ala D-ala ligase [Enterococcus faecalis TX0645]
 gi|315174911|gb|EFU18928.1| D-ala D-ala ligase [Enterococcus faecalis TX1346]
 gi|315577245|gb|EFU89436.1| D-ala D-ala ligase [Enterococcus faecalis TX0630]
 gi|323480023|gb|ADX79462.1| D-alanine--D-alanine ligase [Enterococcus faecalis 62]
 gi|327534427|gb|AEA93261.1| D-alanine--D-alanine ligase [Enterococcus faecalis OG1RF]
          Length = 356

 Score =  288 bits (739), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 81/344 (23%), Positives = 151/344 (43%), Gaps = 51/344 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---LAHLKPD----- 52
           + +L GG S E +VS+ S  +  +A+    ++V  + + +    V   L   +P      
Sbjct: 3   IILLYGGRSEEHDVSVLSAYSVLNAIYYKYYQVQLVFISKDGQWVKGPLLSERPQNKEVL 62

Query: 53  -----------------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                        + F VLHG  GEDG +Q  +E + +PY  +G
Sbjct: 63  HLTWAQTPEETGEFSGKRISPSEIYEEEAIVFPVLHGPNGEDGTIQGFMETINMPYVGAG 122

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPLK 134
           +LASA +MDK+ +K ++ + G+P  P + V R              +  +  P  +KP  
Sbjct: 123 VLASANAMDKIMTKYLLQTVGIPQVPFVPVLRSDWKGNPKEVFEKCEGSLIYPVFVKPAN 182

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI-- 192
            GSS+GI   +  + +        ++ +  + ++EQ ++  E+   ++G+  +  T    
Sbjct: 183 MGSSVGISKAENREELQE--ALEEAFRYDARAIVEQGIEAREIEVAILGNEDVRTTLPGE 240

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            V    FY Y+ KY +      +PA +P ++  + Q  A  A+  +   G+SR DF    
Sbjct: 241 VVKDVAFYDYDAKYINNTIEMQIPAHVPEEVAHQAQEYAKKAYIMLDGSGLSRCDFFLTS 300

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              ++F  E+N  PG T  S++P +    G  + +L+  +++ A
Sbjct: 301 K-NELFLNELNTMPGFTDFSMYPLLWENMGLKYSDLIEELIQLA 343


>gi|11345396|gb|AAG34685.1|AF310955_1 ligase VanB2 [Enterococcus faecalis]
 gi|11345406|gb|AAG34693.1|AF310957_1 ligase VanB2 [Enterococcus faecium]
          Length = 342

 Score =  288 bits (739), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 85/337 (25%), Positives = 146/337 (43%), Gaps = 44/337 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           +A + GG S E +VS+ S    A+ ++   F    I + ++    L              
Sbjct: 6   VATIFGGCSEEHDVSVKSAIEIAANIDTEKFDPHYIGITKNGVWKLCKKPCTEWEADSLP 65

Query: 47  --------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
                                  + D+AF VLHG  GEDG +Q +  L  IPY    I +
Sbjct: 66  AILSPDRKTHGLLVMKESEYETRRIDVAFPVLHGKCGEDGAIQGLFVLSGIPYVGCDIQS 125

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           SA  MDK  +  +  + G+ V    ++++        ++ P  +KP + GSS G+  +  
Sbjct: 126 SAACMDKSLAYILTKNAGIAVPEFQMIDKGDKPEAGALTYPVFVKPARSGSSFGVTKVNG 185

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSY 202
            + +   +   ++  +  ++LIEQ + G E+ C VMG+       +V +I +    F  +
Sbjct: 186 PEELNAAI--EAAGQYDGKILIEQAISGCEVGCAVMGNEDDLIVGEVDQIRLSHGIFRIH 243

Query: 203 ---ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
              E +  S N+   +PA IP++    VQ  A   ++ +GCRG++R D         +  
Sbjct: 244 QENEPEKGSENAMITVPADIPVEERNRVQETAKKVYRVLGCRGLARVDLFLQE-DGGIVL 302

Query: 260 LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            E+N  PG T  S +P M A AG +   L+  ++  A
Sbjct: 303 NEVNTMPGFTSYSRYPRMVAAAGITLPALIDSLITLA 339


>gi|300790098|ref|YP_003770389.1| D-alanine-D-alanine ligase [Amycolatopsis mediterranei U32]
 gi|299799612|gb|ADJ49987.1| D-alanine-D-alanine ligase [Amycolatopsis mediterranei U32]
          Length = 342

 Score =  288 bits (739), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 89/338 (26%), Positives = 147/338 (43%), Gaps = 45/338 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           + ++ GG S E  VS+ S +  A  L+   ++   I + +     L              
Sbjct: 6   VGIIFGGASEEHPVSVKSAQEVARHLDTGKYEPFWIGITKDGAWKLGDGPGESWEAGRTV 65

Query: 47  -------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87
                                +  D+   VLHG  GEDG +Q +LEL  IPY    + +S
Sbjct: 66  VLSPDRSVPGLLVLEDGKYETIGLDVVLPVLHGKLGEDGAMQGLLELSGIPYAGCDVPSS 125

Query: 88  ALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147
           AL MDK  +  V +S G+       V     D     + P  +KP + GSS G+  +   
Sbjct: 126 ALCMDKSLAYVVAASAGIATPKFRTV--LAGDDAGAFTYPVFVKPARSGSSFGVSKVSGR 183

Query: 148 QSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSYE 203
           + +   +  ++   +  ++LIE+ V G E+ C V+G+     + +V  IA+    F  ++
Sbjct: 184 EELAAAISTAA--QYDAKVLIEEAVVGSEVGCAVLGNGRELFAGEVDRIALSHGFFRIHQ 241

Query: 204 LKY---SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260
            +     S NST ++PA +P +    VQ+ A   ++A+GC+G++R D         V   
Sbjct: 242 EEQPESGSENSTPIVPADVPAETRARVQQTAKAIYRALGCKGLARVDMFLT-DDGTVVLN 300

Query: 261 EINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           E+N  PG+T  S +P M A AG     L+  +V  A  
Sbjct: 301 EVNTLPGLTSYSRYPRMMAAAGVPLSALIDRLVSLAMT 338


>gi|184153120|ref|YP_001841461.1| D-alanyl-alanine synthetase A [Lactobacillus reuteri JCM 1112]
 gi|183224464|dbj|BAG24981.1| D-alanine--D-alanine ligase [Lactobacillus reuteri JCM 1112]
          Length = 382

 Score =  288 bits (739), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 93/343 (27%), Positives = 161/343 (46%), Gaps = 52/343 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI------------------------ 36
           +A+L GG SSE +VS  S      AL+   + VS                          
Sbjct: 11  IALLFGGNSSEHDVSKRSAHNIYDALDKEKYDVSLFMFTKDGILLGNEDSQKIFDGEPED 70

Query: 37  ----------DVDRSVGLVLA---HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                     D+   +  ++A     + D  F V+HGN GEDG +Q + +LL  PY  S 
Sbjct: 71  QVVAEAYQKMDMSSPLAPIMALNEQKEIDFFFPVIHGNLGEDGTIQGLFKLLNKPYVGSN 130

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVIKPLKGGS 137
           I ASA+S DK  +K+++S  G+   P ++V             +  +     +KP K GS
Sbjct: 131 IAASAMSFDKDLTKKIISQAGIRNTPYVVVTPENQADYSWGRIEEKLGNLTFVKPAKQGS 190

Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVT---EIA 193
           S+GI  +   +     L  +  +++  ++L+EQ + +  E+   ++G+     +    + 
Sbjct: 191 SVGIHRVTNAEEYEKALDDAFKYDY--KILVEQGIANPQEIEISILGNEHPIASKLGAVR 248

Query: 194 VPKSD-FYSYELKYSSLNS-THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
           VPK D FY YE K+   +     LP K+P  +  E+  +A  A++A+G +G++R DFL D
Sbjct: 249 VPKDDPFYDYENKFVDASGVVFELPVKLPQYLVDEITDMALKAYKALGMKGMARIDFLVD 308

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             +   +  E N  PG T +S++P+M   +G S+ +L+  +++
Sbjct: 309 -SNNVPYLGEPNTLPGFTNISLYPQMWEVSGISYSDLIDRLIQ 350


>gi|257083761|ref|ZP_05578122.1| D-alanine:D-alanine ligase [Enterococcus faecalis Fly1]
 gi|256991791|gb|EEU79093.1| D-alanine:D-alanine ligase [Enterococcus faecalis Fly1]
          Length = 356

 Score =  288 bits (739), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 81/344 (23%), Positives = 151/344 (43%), Gaps = 51/344 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---LAHLKPD----- 52
           + +L GG S E +VS+ S  +  +A+    ++V  + + +    V   L   +P      
Sbjct: 3   IILLYGGRSEEHDVSVLSAYSVLNAIYYKYYQVQLVFISKDGQWVKGPLLSERPQNKEVL 62

Query: 53  -----------------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                        + F VLHG  GEDG +Q  +E + +PY  +G
Sbjct: 63  YLTWAQTPEETGEFSGKRISPSEIYEEEAIVFPVLHGPNGEDGTIQGFMETINMPYVGAG 122

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPLK 134
           +LASA +MDK+ +K ++ + G+P  P + V R              +  +  P  +KP  
Sbjct: 123 VLASANAMDKIMTKYLLQTVGIPQVPFVPVLRSDWKGNPKEVFEKCEGSLIYPVFVKPAN 182

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI-- 192
            GSS+GI   +  + +        ++ +  + ++EQ ++  E+   ++G+  +  T    
Sbjct: 183 MGSSVGISKAENREELQE--ALEEAFRYDARAIVEQGIEAREIEVAILGNEDVRTTLPGE 240

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            V    FY Y+ KY +      +PA +P ++  + Q  A  A+  +   G+SR DF    
Sbjct: 241 VVKDVAFYDYDAKYINNTIEMQIPAHVPEEVAHQAQEYAKKAYIMLDGSGLSRCDFFLTS 300

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              ++F  E+N  PG T  S++P +    G  + +L+  +++ A
Sbjct: 301 K-NELFLNELNTMPGFTDFSMYPLLWENMGLKYSDLIEELIQLA 343


>gi|256832903|ref|YP_003161630.1| D-alanine/D-alanine ligase [Jonesia denitrificans DSM 20603]
 gi|256686434|gb|ACV09327.1| D-alanine/D-alanine ligase [Jonesia denitrificans DSM 20603]
          Length = 389

 Score =  288 bits (739), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 95/356 (26%), Positives = 147/356 (41%), Gaps = 65/356 (18%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD---------- 52
           VL GG S E  +S  +      A++   F V  + + +    VLA   PD          
Sbjct: 29  VLFGGRSGEHPISCITAAGVLRAIDRDRFDVVAVGITQGGKWVLASTDPDEVVTSGDDLP 88

Query: 53  -----------------------------------LAFNVLHGNFGEDGLVQAILELLEI 77
                                              +   +LHG FGEDG VQ +LEL ++
Sbjct: 89  HVADNGTEVLLPFASGDNEVRVIRDGVLESVGPVDVVLPLLHGPFGEDGTVQGMLELADL 148

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTMDSQHL------ISPPYV 129
            Y   G+L SA+ MDK   K V    G+PV P   V   ++  D   +      +  P  
Sbjct: 149 RYVGVGVLGSAVGMDKHYMKLVFEGHGLPVGPYTTVFPGQWQRDPDEVRARVVALGLPVF 208

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           +KP + GSSLGI  +     +  D   + +  H  +++IE  + G E+ C V+G      
Sbjct: 209 VKPTRAGSSLGISKVSDVGDL--DRAMAEALKHDPKVIIEAGIVGREIECAVLGGHGDTP 266

Query: 190 TEIAVPK--------SDFYSYELKYSSL-NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
              ++P          +FY +E KY    ++    PA++       V+ +A  A  A+G 
Sbjct: 267 ARASLPGEITMTGSAHEFYDFEAKYLDDASAQLSCPAELDETTTATVREVAVRAFDAVGG 326

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            G+SR D         V   EIN  PG TP+S++P M   +G S+ EL+  +++ A
Sbjct: 327 EGLSRVDVFVQE-DGAVVVNEINTMPGFTPISMYPRMWERSGVSYTELISELIDLA 381


>gi|333029727|ref|ZP_08457788.1| D-alanine--D-alanine ligase [Bacteroides coprosuis DSM 18011]
 gi|332740324|gb|EGJ70806.1| D-alanine--D-alanine ligase [Bacteroides coprosuis DSM 18011]
          Length = 326

 Score =  288 bits (739), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 97/323 (30%), Positives = 164/323 (50%), Gaps = 33/323 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40
           ++++ GG SSE  VSL S +   S ++ + + +  +++                    D 
Sbjct: 6   VSIVAGGDSSELPVSLKSAQGIYSFIDKSRYDLYIVEIQNKVWRVRLDNGVYAPINRHDF 65

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           S       +  D A+  +HG  GEDGL+Q   ELL IPY+  G+LASAL+ DK    Q +
Sbjct: 66  SFEWNGEVITFDFAYITIHGTPGEDGLLQGYFELLGIPYSSCGVLASALTFDKFVCNQYL 125

Query: 101 SSCGVPVCPSILVNR----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
              G+ V  S+++ +      +D    I  P  IKP  GGSS G+  + K++ I   +L+
Sbjct: 126 KGFGMKVAESLMLRKGQSISDVDVVEKIGLPCFIKPNLGGSSFGVSKVTKEEQIQPAILK 185

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNST 212
             +++   ++LIE ++DG E+TCG    +       +TE+ V  ++F+ Y+ KY+     
Sbjct: 186 --AFHESSEILIEAFMDGTEITCGCYKTSNKSVVFPITEV-VTHNEFFDYDAKYN-GQVE 241

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
            + PA++  ++ K VQ L    +  IGC GI R DF+     + +  LE+N  PGMTP S
Sbjct: 242 EITPARLSDELTKRVQTLTSAIYDIIGCSGIIRVDFIITDK-KVINLLEVNTTPGMTPTS 300

Query: 273 IFPEMAAYAGYSFRELLLWMVED 295
             P+    AG   ++++  ++E+
Sbjct: 301 FIPQQVRAAGLEIQDVMTDIIEN 323


>gi|225412310|ref|ZP_03761499.1| hypothetical protein CLOSTASPAR_05532 [Clostridium asparagiforme
           DSM 15981]
 gi|225042103|gb|EEG52349.1| hypothetical protein CLOSTASPAR_05532 [Clostridium asparagiforme
           DSM 15981]
          Length = 353

 Score =  288 bits (739), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 94/343 (27%), Positives = 152/343 (44%), Gaps = 53/343 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           + VL GG SSE  VS  S       ++   +++  I +      +               
Sbjct: 6   VVVLFGGQSSEHVVSCMSAANVIDRIDQEKYELLLIGITEEGRWIRTECVEDIRSGSWRD 65

Query: 49  --------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
                                     +  D+ F VLHG +GEDG VQ +LEL +IPY   
Sbjct: 66  GTVSAVISPDATEKCVILMDGESAERVPVDVVFPVLHGLYGEDGTVQGLLELAKIPYVGC 125

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI--------SPPYVIKPLK 134
           G+LASA+SMDK+ +K +V + GV       V R  +     +        S P  IKP  
Sbjct: 126 GVLASAVSMDKLFTKIIVDNLGVRQAEYEPVTREQLAHMEAVTARIEGHFSYPVFIKPSN 185

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194
            GSS G+   +  + +   LL+++   H  ++L+E+ + G E+ C V G  +  V    V
Sbjct: 186 AGSSRGVSKAENREELEAGLLEAA--RHDRKILVEEAIVGREVECAVFGGGAEAVVASGV 243

Query: 195 PK----SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
            +    ++FY +E KY +  S  V   ++P D  + +++ A    QA+   G++R DF  
Sbjct: 244 GEILAAAEFYDFEAKYYNEESRTVTDPELPGDAAERIRQTAVSVFQAVDGYGLARVDFFV 303

Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
                +V + EIN  PG T +S++P +    G S  EL+  ++
Sbjct: 304 TG-DGEVVFNEINTLPGFTAISMYPMLWEARGVSKEELVEKLI 345


>gi|11345394|gb|AAG34684.1|AF310954_1 ligase VanB2 [Enterococcus faecium]
          Length = 342

 Score =  288 bits (739), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 85/337 (25%), Positives = 146/337 (43%), Gaps = 44/337 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           +A + GG S E +VS+ S    A+ ++   F    I + ++    L              
Sbjct: 6   VATIFGGCSEEHDVSVKSAIEIAANIDTEKFDPHYIGITKNGVWKLCKKPCTEWEADSLP 65

Query: 47  --------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
                                  + D+AF VLHG  GEDG +Q +  L  IPY    I +
Sbjct: 66  AILSPDRKTHGLLVMKESEYETRRIDVAFPVLHGKCGEDGAIQGLFVLSGIPYVGCDIQS 125

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           SA  MDK  +  +  + G+ V    ++++        ++ P  +KP + GSS G+  +  
Sbjct: 126 SAACMDKSLAYILTKNAGIAVPEFQMIDKGDKPEAGALTYPVFVKPARAGSSFGLTKVNG 185

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSY 202
            + +   +   ++  +  ++LIEQ + G E+ C VMG+       +V +I +    F  +
Sbjct: 186 TEELNAAI--EAAGQYDGKILIEQAISGCEVGCAVMGNEDDLIVGEVDQIRLSHGIFRIH 243

Query: 203 ---ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
              E +  S N+   +PA IP++    VQ  A   ++ +GCRG++R D         +  
Sbjct: 244 QENEPEKGSENAMITVPADIPVEERNRVQETAKKVYRVLGCRGLARVDLFLQE-DGGIVL 302

Query: 260 LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            E+N  PG T  S +P M A AG +   L+  ++  A
Sbjct: 303 NEVNTLPGFTSYSRYPRMMAAAGITLPALIDSLITLA 339


>gi|29349121|ref|NP_812624.1| D-alanyl-alanine synthetase A [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|253571284|ref|ZP_04848691.1| D-alanyl-alanine synthetase A [Bacteroides sp. 1_1_6]
 gi|298386818|ref|ZP_06996373.1| D-alanine--D-alanine ligase [Bacteroides sp. 1_1_14]
 gi|39930883|sp|Q8A1F3|DDL_BACTN RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|29341028|gb|AAO78818.1| D-alanine--D-alanine ligase [Bacteroides thetaiotaomicron VPI-5482]
 gi|251839237|gb|EES67321.1| D-alanyl-alanine synthetase A [Bacteroides sp. 1_1_6]
 gi|298260492|gb|EFI03361.1| D-alanine--D-alanine ligase [Bacteroides sp. 1_1_14]
          Length = 324

 Score =  288 bits (738), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 88/322 (27%), Positives = 156/322 (48%), Gaps = 31/322 (9%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40
           +A++ GG +SE  VSL S +   S ++   + +  +++                    D 
Sbjct: 5   IAIVAGGDTSEFHVSLRSAQGIYSFIDKEKYTLYIVEMQGTRWEVQLPDGAKAPVDRNDF 64

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           S  L    ++ D A+  +HG  GEDG +Q   +++ IPY+  G+LA+A++ DK    Q +
Sbjct: 65  SFMLGTEKIRFDFAYITIHGTPGEDGRLQGYFDMMHIPYSCCGVLAAAITYDKFTCNQYL 124

Query: 101 SSCGVPVCPSILVNR----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
            + GV +  S+L+ +       D    I  P  IKP  GGSS G+  +K  + I   +++
Sbjct: 125 KAFGVRIAESLLLRQGQSVSDEDVMEKIGLPCFIKPSLGGSSFGVTKVKTKEQIQPAIVK 184

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA---VPKSDFYSYELKYSSLNSTH 213
             ++    ++L+E +++G ELTCG        V       V  ++F+ Y+ KY+      
Sbjct: 185 --AFEEAQEVLVEAFMEGTELTCGCYKTKDKTVIFPPTEVVTHNEFFDYDAKYN-GQVDE 241

Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273
           + PA+I  ++   VQ L    +  +GC GI R D++      K+  LE+N  PGMT  S 
Sbjct: 242 ITPARISDELTNRVQMLTSAIYDILGCSGIIRVDYIVTA-GEKINLLEVNTTPGMTTTSF 300

Query: 274 FPEMAAYAGYSFRELLLWMVED 295
            P+    AG   ++++  ++E+
Sbjct: 301 IPQQVRAAGLDIKDVMTDIIEN 322


>gi|260559881|ref|ZP_05832060.1| D-alanine:D-lactate ligase [Enterococcus faecium C68]
 gi|260074105|gb|EEW62428.1| D-alanine:D-lactate ligase [Enterococcus faecium C68]
          Length = 342

 Score =  288 bits (738), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 84/337 (24%), Positives = 146/337 (43%), Gaps = 44/337 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           +A++ GG S E +VS+ S    A+ ++   F    I + ++    L              
Sbjct: 6   VAIIFGGCSEEHDVSVKSAIEIAANIDTEKFDPHYIGITKNGVWKLCKKPCTEWEADSLP 65

Query: 47  --------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
                                  + D+AF VLHG  GEDG +Q +  L  IPY    I +
Sbjct: 66  AILSPDRKTHGLLVMKESEYETRRIDVAFPVLHGKCGEDGAIQGLFVLSGIPYVGCDIQS 125

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           SA  MDK  +  +  + G+ V    ++++        ++ P  +KP + GSS G+  +  
Sbjct: 126 SAACMDKSLAYILTKNAGIAVPEFQIIDKGDKPEAGALTYPVFVKPARSGSSFGVTKVNG 185

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSY 202
            + +   +   ++  +  ++LIEQ + G E+ C VMG+       +V +I +    F  +
Sbjct: 186 TEELNAAI--EAAGQYDGKILIEQAISGCEVGCAVMGNEDDLIVGEVDQIRLSHGIFRIH 243

Query: 203 ---ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
              E +  S N+   +PA IP++    VQ  A   ++ +GCRG++R D         +  
Sbjct: 244 QENEPEKGSENAMITVPADIPVEERNRVQETAKKVYRVLGCRGLARVDLFLQE-DGGIVL 302

Query: 260 LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            E+N  PG T  S +  M A AG +   L+  ++  A
Sbjct: 303 NEVNTMPGFTSYSRYTRMVAAAGITLPALIDSLITLA 339


>gi|227543554|ref|ZP_03973603.1| D-alanine--D-alanine ligase [Lactobacillus reuteri CF48-3A]
 gi|300908262|ref|ZP_07125728.1| D-alanine--D-alanine ligase [Lactobacillus reuteri SD2112]
 gi|227186481|gb|EEI66552.1| D-alanine--D-alanine ligase [Lactobacillus reuteri CF48-3A]
 gi|300894689|gb|EFK88045.1| D-alanine--D-alanine ligase [Lactobacillus reuteri SD2112]
          Length = 378

 Score =  288 bits (738), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 93/343 (27%), Positives = 161/343 (46%), Gaps = 52/343 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI------------------------ 36
           +A+L GG SSE +VS  S      AL+   + VS                          
Sbjct: 7   IALLFGGNSSEHDVSKRSAHNIYDALDKEKYDVSLFMFTKDGILLGNEDSQKIFDGEPED 66

Query: 37  ----------DVDRSVGLVLA---HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                     D+   +  ++A     + D  F V+HGN GEDG +Q + +LL  PY  S 
Sbjct: 67  QVVAEAYQKMDMSSPLAPIMALNEQKEIDFFFPVIHGNLGEDGTIQGLFKLLNKPYVGSN 126

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVIKPLKGGS 137
           I ASA+S DK  +K+++S  G+   P ++V             +  +     +KP K GS
Sbjct: 127 IAASAMSFDKDLTKKIISQAGIRNTPYVVVTPENRADYSWSRIEEKLGNLTFVKPAKQGS 186

Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVT---EIA 193
           S+GI  +   +     L  +  +++  ++L+EQ + +  E+   ++G+     +    + 
Sbjct: 187 SVGIHRVTNAEEYEKALDDAFKYDY--KILVEQGIANPQEIEISILGNEHPIASKLGAVR 244

Query: 194 VPKSD-FYSYELKYSSLNS-THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
           VPK D FY YE K+   +     LP K+P  +  E+  +A  A++A+G +G++R DFL D
Sbjct: 245 VPKDDPFYDYENKFVDASGVVFELPVKLPQYLVDEITDMALKAYKALGMKGMARIDFLVD 304

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             +   +  E N  PG T +S++P+M   +G S+ +L+  +++
Sbjct: 305 -SNNVPYLGEPNTLPGFTNISLYPQMWEVSGISYSDLIDRLIQ 346


>gi|227517504|ref|ZP_03947553.1| D-alanine--D-alanine ligase [Enterococcus faecalis TX0104]
 gi|227075024|gb|EEI12987.1| D-alanine--D-alanine ligase [Enterococcus faecalis TX0104]
          Length = 344

 Score =  288 bits (738), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 85/339 (25%), Positives = 147/339 (43%), Gaps = 46/339 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           +A++ GG S E +VS+ S    A+ ++   F    I + ++    L              
Sbjct: 6   VAIIFGGCSEEHDVSVKSAIEIAANIDTEKFDPHYIGITKNGVWKLCKKPCTEWEADSLP 65

Query: 47  --------------------AHLKPDLAFNVLHG--NFGEDGLVQAILELLEIPYTHSGI 84
                                  + D+AF VLHG    GEDG +Q +  L  IPY    I
Sbjct: 66  AILSPDRKTHGLLVMKESEYETRRIDVAFPVLHGKCGGGEDGAIQGLFVLSGIPYVGCDI 125

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
            +SA  MDK  +  +  + G+ V    ++++        ++ P  +KP + GSS G+  +
Sbjct: 126 QSSAACMDKSLAYILTKNAGIAVPEFQMIDKGDKPEAGALTYPVFVKPARSGSSFGVTKV 185

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFY 200
              + +   +   ++  +  ++LIEQ + G E+ C VMG+       +V +I +    F 
Sbjct: 186 NGTEELNAAI--EAAGQYDGKILIEQAISGCEVGCAVMGNEDDLIVGEVDQIRLSHGIFR 243

Query: 201 SY---ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
            +   E +  S N+   +PA IP++    VQ  A   ++ +GCRG++R D         +
Sbjct: 244 IHQENEPEKGSENAMITVPADIPVEERNRVQETAKKVYRVLGCRGLARVDLFLQE-DGGI 302

Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              E+N  PG T  S +P M A AG +   L+  ++  A
Sbjct: 303 VLNEVNTLPGFTSYSRYPRMMAAAGITLPALIDSLITLA 341


>gi|15675338|ref|NP_269512.1| D-alanyl-alanine synthetase A [Streptococcus pyogenes M1 GAS]
 gi|56807611|ref|ZP_00365514.1| COG1181: D-alanine-D-alanine ligase and related ATP-grasp enzymes
           [Streptococcus pyogenes M49 591]
 gi|71903814|ref|YP_280617.1| D-alanyl-alanine synthetase A [Streptococcus pyogenes MGAS6180]
 gi|71910971|ref|YP_282521.1| D-alanyl-alanine synthetase A [Streptococcus pyogenes MGAS5005]
 gi|94988835|ref|YP_596936.1| D-alanyl-alanine synthetase A [Streptococcus pyogenes MGAS9429]
 gi|94992726|ref|YP_600825.1| D-alanyl-alanine synthetase A [Streptococcus pyogenes MGAS2096]
 gi|209559648|ref|YP_002286120.1| D-alanyl-alanine synthetase A [Streptococcus pyogenes NZ131]
 gi|22095564|sp|Q99Z34|DDL_STRP1 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|123639624|sp|Q48SP8|DDL_STRPM RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|166198506|sp|Q1JAX7|DDL_STRPB RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|166198507|sp|Q1JL27|DDL_STRPC RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|226729274|sp|B5XM63|DDL_STRPZ RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|13622520|gb|AAK34233.1| putative D-ala,D-ala ligase [Streptococcus pyogenes M1 GAS]
 gi|71802909|gb|AAX72262.1| D-alanine--D-alanine ligase [Streptococcus pyogenes MGAS6180]
 gi|71853753|gb|AAZ51776.1| D-alanine--D-alanine ligase [Streptococcus pyogenes MGAS5005]
 gi|94542343|gb|ABF32392.1| D-alanine--D-alanine ligase [Streptococcus pyogenes MGAS9429]
 gi|94546234|gb|ABF36281.1| D-alanine--D-alanine ligase [Streptococcus pyogenes MGAS2096]
 gi|209540849|gb|ACI61425.1| D-alanine--D-alanine ligase [Streptococcus pyogenes NZ131]
          Length = 348

 Score =  288 bits (738), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 87/334 (26%), Positives = 158/334 (47%), Gaps = 41/334 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKV--------------------------- 33
           + +L GG S+EREVS+ S ++   A+    F V                           
Sbjct: 6   LVLLYGGRSAEREVSVLSAESVMRAVNYDKFLVKTYFITQMGQFIKTQQFSEKPSESERL 65

Query: 34  ---SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
                I++ + +     + +  + F VLHG  GEDG +Q  LE+L +PY  + +++S+++
Sbjct: 66  MTNETIELTQKIKPSDIYEEGAVVFPVLHGPMGEDGSIQGFLEVLRMPYIGTNVMSSSIA 125

Query: 91  MDKMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
           MDK+ +K+V+ S G+P     +      +    +++   ++ P  +KP   GSS+GI   
Sbjct: 126 MDKITTKRVLESIGIPQVAYTVYIDGQDLEACLVETLARLTFPIFVKPANMGSSVGISKA 185

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202
           +    +   +  +    +  ++LIEQ V   E+  G++G+  +  T     +   DFY Y
Sbjct: 186 QTKVELRKAIQLAL--TYDSRVLIEQGVVAREIEVGLLGNDKVKSTLPGEVIKDVDFYDY 243

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
           + KY     T  +PA +   I  E++  A +A +A+G  G+SR DF       +V+  E+
Sbjct: 244 QAKYVDNKITMAIPADVDQSIVTEMRSYAEVAFKALGGCGLSRCDFFLT-QDGQVYLNEL 302

Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           N  PG T  S++P +    G ++ +L+  +V  A
Sbjct: 303 NTMPGFTQWSMYPLLWENMGLAYPDLIEELVTLA 336


>gi|24214759|ref|NP_712240.1| D-alanine--D-alanine ligase [Leptospira interrogans serovar Lai
           str. 56601]
 gi|39930898|sp|Q8F4I2|DDL_LEPIN RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|24195760|gb|AAN49258.1|AE011378_5 D-alanine--D-alanine ligase [Leptospira interrogans serovar Lai
           str. 56601]
          Length = 351

 Score =  288 bits (738), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 104/345 (30%), Positives = 161/345 (46%), Gaps = 56/345 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           +AV  GG S+E  +S+ +G      L   G  V  I + +  G V+              
Sbjct: 4   IAVFFGGSSTEHSISILTGCFICKTLHTMGHSVKPILLTKDGGWVVPSEYRMSIPFEVSN 63

Query: 49  -----------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
                                  L  D+ F  LHG  GEDG +Q  LE+L IPYT SG+L
Sbjct: 64  SPDLFQEEFQKRYGVSRTNQIFSLDADIVFLGLHGGQGEDGTIQGFLEILGIPYTGSGVL 123

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--------MDSQHLISPPYVIKPLKGGS 137
           ASA++MDK R+ Q+    G  V P   +++          +     +  P  +KP++GGS
Sbjct: 124 ASAIAMDKTRANQIFLQSGQKVAPFFEIDKLEYLNSTDAVITKLETLGFPQFLKPVEGGS 183

Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM--------GDASLDV 189
           S+ +  I   + +   L     +    +++ + ++ GIE++CGV+           +L  
Sbjct: 184 SVSVYKITNREQLKEKLAL--IFESDSKVMSQSFLTGIEVSCGVLERYRDGKFKKIALPA 241

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
           TEI VP  +F+ +E KY    S  + PA+I     K VQ LA  AH+++GC G SR+DF+
Sbjct: 242 TEI-VPGGEFFDFESKYKQGGSHEITPARISEQEMKRVQELAIAAHRSLGCSGYSRTDFI 300

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
              ++ +   LE N  PGMT  S+ P+ A  AG S  E+   ++E
Sbjct: 301 I--VNGEPHILETNTLPGMTETSLIPQQAKAAGISMEEVFSDLIE 343


>gi|19746380|ref|NP_607516.1| D-alanyl-alanine synthetase A [Streptococcus pyogenes MGAS8232]
 gi|139473555|ref|YP_001128271.1| D-alanyl-alanine synthetase A [Streptococcus pyogenes str.
           Manfredo]
 gi|25452913|sp|Q8P0C4|DDL_STRP8 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|166198510|sp|A2RDW0|DDL_STRPG RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|19748578|gb|AAL98015.1| putative D-ala,D-ala ligase [Streptococcus pyogenes MGAS8232]
 gi|134271802|emb|CAM30035.1| D-alanine--D-alanine ligase [Streptococcus pyogenes str. Manfredo]
          Length = 348

 Score =  288 bits (738), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 87/334 (26%), Positives = 158/334 (47%), Gaps = 41/334 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKV--------------------------- 33
           + +L GG S+EREVS+ S ++   A+    F V                           
Sbjct: 6   LVLLYGGRSAEREVSVLSAESVMRAVNYDKFLVKTYFITQMGQFIRTQQFSEKPSESERL 65

Query: 34  ---SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
                I++ + +     + +  + F VLHG  GEDG +Q  LE+L +PY  + +++S+++
Sbjct: 66  MTNETIELTQKIKPSDIYEEGAVVFPVLHGPMGEDGSIQGFLEVLRMPYIGTNVMSSSIA 125

Query: 91  MDKMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
           MDK+ +K+V+ S G+P     +      +    +++   ++ P  +KP   GSS+GI   
Sbjct: 126 MDKITTKRVLESIGIPQVAYTVYIDGQDLEACLVETLARLTFPIFVKPANMGSSVGISKA 185

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202
           +    +   +  +    +  ++LIEQ V   E+  G++G+  +  T     +   DFY Y
Sbjct: 186 QTKVELRKAIQLAL--TYDSRVLIEQGVVAREIEVGLLGNDKVKSTLPGEVIKDVDFYDY 243

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
           + KY     T  +PA +   I  E++  A +A +A+G  G+SR DF       +V+  E+
Sbjct: 244 QAKYVDNKITMAIPADVDQSIVTEMRSYAEVAFKALGGCGLSRCDFFLT-QDGQVYLNEL 302

Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           N  PG T  S++P +    G ++ +L+  +V  A
Sbjct: 303 NTMPGFTQWSMYPLLWENMGLAYPDLIEELVTLA 336


>gi|257081093|ref|ZP_05575454.1| D-alanine:D-alanine ligase [Enterococcus faecalis E1Sol]
 gi|256989123|gb|EEU76425.1| D-alanine:D-alanine ligase [Enterococcus faecalis E1Sol]
          Length = 356

 Score =  288 bits (738), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 81/344 (23%), Positives = 151/344 (43%), Gaps = 51/344 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---LAHLKPD----- 52
           + +L GG S E +VS+ S  +  +A+    ++V  + + +    V   L   +P      
Sbjct: 3   IILLYGGRSEEHDVSVLSAYSVLNAIYYKYYQVQLVFISKDGQWVKGPLLSERPQNKEVL 62

Query: 53  -----------------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                        + F VLHG  GEDG +Q  +E + +PY  +G
Sbjct: 63  HLTWAQTPEEIGEFSGKRISPSEIYEEEAIVFPVLHGPNGEDGTIQGFMETINMPYVGAG 122

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPLK 134
           +LASA +MDK+ +K ++ + G+P  P + V R              +  +  P  +KP  
Sbjct: 123 VLASANAMDKIMTKYLLQTVGIPQVPFVPVLRSDWKGNPKEVFEKCEGSLIYPVFVKPAN 182

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI-- 192
            GSS+GI   +  + +        ++ +  + ++EQ ++  E+   ++G+  +  T    
Sbjct: 183 MGSSVGISKAENREELQE--ALEEAFRYDARAIVEQGIEAREIEVAILGNEDVRTTLPGE 240

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            V    FY Y+ KY +      +PA +P ++  + Q  A  A+  +   G+SR DF    
Sbjct: 241 VVKDVAFYDYDAKYINNTIEMQIPAHVPEEVAHQAQEYAKKAYIMLDGSGLSRCDFFLTS 300

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              ++F  E+N  PG T  S++P +    G  + +L+  +++ A
Sbjct: 301 K-NELFLNELNTMPGFTDFSMYPLLWENMGLKYSDLIEELIQLA 343


>gi|146300373|ref|YP_001194964.1| D-alanyl-alanine synthetase A [Flavobacterium johnsoniae UW101]
 gi|190359130|sp|A5FGN3|DDL_FLAJ1 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|146154791|gb|ABQ05645.1| D-alanine--D-alanine ligase [Flavobacterium johnsoniae UW101]
          Length = 323

 Score =  288 bits (738), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 95/322 (29%), Positives = 159/322 (49%), Gaps = 34/322 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40
           +A++MGG SSE ++SL SG      L+   +   +I +                    D 
Sbjct: 4   IAIIMGGYSSEYKISLISGNVVYQYLDKTKYNGFRIHIFKEKWVYVDANDAEFPIDRNDF 63

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           SV +    +  D  FN +HG  GEDGL+QA  EL+ +P +      SAL+ +K     V+
Sbjct: 64  SVTVNGEKITFDCVFNAIHGTPGEDGLMQAYFELIGLPQSSCDYYQSALTFNKRDLLSVL 123

Query: 101 SSCGVPVCPSILVNRF----TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
              G+    S  +N+     T +    +  P  +KP K GSS GI  +K +  +P  +  
Sbjct: 124 KPYGIKTAISYYLNKGDEINTAEIVKKVGLPCFVKPNKAGSSFGISKVKSEAELP--IAI 181

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGD----ASLDVTEIAVPKSDFYSYELKYSSLNST 212
             ++   ++++IE ++DG E++ GV+        L +TEI V  +DF+ YE KY    S 
Sbjct: 182 EVAYKEDNEIIIESFLDGTEVSVGVINYKGEIKVLPITEI-VSDNDFFDYEAKYE-GKSQ 239

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
            + PA+I  ++ ++V   A  A++ +  +G SRS+F+   +  + + LE+N  PG+T  S
Sbjct: 240 EITPARISDELTQKVGETAKRAYEVLKMKGFSRSEFII--VDNEPYMLEMNTIPGLTTES 297

Query: 273 IFPEMAAYAGYSFRELLLWMVE 294
           + P+ A  AG S  +L    +E
Sbjct: 298 LIPQQAKAAGISLEDLFTNAIE 319


>gi|268318672|ref|YP_003292328.1| D-alanine-D-alanine ligase A [Lactobacillus johnsonii FI9785]
 gi|262397047|emb|CAX66061.1| D-alanine-D-alanine ligase A [Lactobacillus johnsonii FI9785]
          Length = 361

 Score =  288 bits (738), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 92/342 (26%), Positives = 159/342 (46%), Gaps = 48/342 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------DRSVGLVLAHLK-- 50
           + ++ GG SSE EVS+ S       ++   F V  + +        D     VL + K  
Sbjct: 7   IGLIFGGNSSEYEVSIMSAHNIYEEIDTNKFDVYPMWITNDGYLADDADSRKVLDNPKME 66

Query: 51  ---------------------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
                                 D+ F ++HGN GEDG +Q +  +L+ P+    +LA+A+
Sbjct: 67  VANPHKVANISNIIELKDRPEIDVFFPIVHGNLGEDGCLQGLFRVLDKPFVGDDVLAAAV 126

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH-----------LISPPYVIKPLKGGSS 138
           +MDK  +K +    GVPV   I V RF  +               +     +KP   GSS
Sbjct: 127 TMDKEMTKILAQRAGVPVAKWIAVKRFEYNDPDNEKLDYEYVASQLGSDLFVKPSNQGSS 186

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL---DVTEIAVP 195
           +G+  +  ++   + L  + ++ + D++L+E+ V G E+   V+G+       V +I   
Sbjct: 187 VGVSHVTNEKEYKVAL--AEAFKYDDKVLVEETVHGTEVETAVLGNDKPIVAGVGQIINA 244

Query: 196 KSDFYSYELKYSSLN-STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
           K  FY+YE KY   + ST  +PAK+P  I + V++ A    QA  C G++R D +     
Sbjct: 245 KDSFYTYENKYDDDSTSTLEIPAKLPEGIVETVRKNALKVFQATECSGLARIDSMLRSED 304

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            +V   E+N  PG T +S++P++    G  + +L+  +++ A
Sbjct: 305 NEVVLTEVNALPGFTNISMYPKLFEEIGIPYTDLITKLIDYA 346


>gi|28895692|ref|NP_802042.1| D-alanyl-alanine synthetase A [Streptococcus pyogenes SSI-1]
 gi|306827069|ref|ZP_07460367.1| D-alanine-D-alanine ligase [Streptococcus pyogenes ATCC 10782]
 gi|39930902|sp|Q8K6X7|DDL_STRP3 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|28810941|dbj|BAC63875.1| putative D-ala,D-ala ligase [Streptococcus pyogenes SSI-1]
 gi|304430815|gb|EFM33826.1| D-alanine-D-alanine ligase [Streptococcus pyogenes ATCC 10782]
          Length = 348

 Score =  288 bits (738), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 87/334 (26%), Positives = 158/334 (47%), Gaps = 41/334 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKV--------------------------- 33
           + +L GG S+EREVS+ S ++   A+    F V                           
Sbjct: 6   LVLLYGGRSAEREVSVLSAESVMRAVNYDKFLVKTYFITQMGQFIKTQQFSEKPSESERL 65

Query: 34  ---SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
                I++ + +     + +  + F VLHG  GEDG +Q  LE+L +PY  + +++S+++
Sbjct: 66  MTNETIELTQKIKPSDIYEEGAVVFPVLHGPMGEDGSIQGFLEVLRMPYIGTNVMSSSIA 125

Query: 91  MDKMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
           MDK+ +K+V+ S G+P     +      +    +++   ++ P  +KP   GSS+GI   
Sbjct: 126 MDKITTKRVLESIGIPQVAYTVYIDGQDLEACLVETLARLTFPIFVKPANMGSSVGISKA 185

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202
           +    +   +  +    +  ++LIEQ V   E+  G++G+  +  T     +   DFY Y
Sbjct: 186 QTKVELRKAIQLAL--TYDSRVLIEQGVVAREIEVGLLGNDKVKSTLPGEVIKDVDFYDY 243

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
           + KY     T  +PA +   I  E++  A +A +A+G  G+SR DF       +V+  E+
Sbjct: 244 QAKYVDNKITMAIPADVDQSIVTEMRSYAEVAFKALGGCGLSRCDFFLT-QDGQVYLNEL 302

Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           N  PG T  S++P +    G ++ +L+  +V  A
Sbjct: 303 NTMPGFTQWSMYPLLWENMGLAYPDLIEELVTLA 336


>gi|19552539|ref|NP_600541.1| D-alanyl-alanine synthetase A [Corynebacterium glutamicum ATCC
           13032]
 gi|62390203|ref|YP_225605.1| D-alanyl-alanine synthetase A [Corynebacterium glutamicum ATCC
           13032]
 gi|25452911|sp|Q8NQV2|DDL_CORGL RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|21324089|dbj|BAB98714.1| D-alanine-D-alanine ligase and related ATP-grasp enzymes
           [Corynebacterium glutamicum ATCC 13032]
 gi|41325539|emb|CAF20019.1| D-ALANINE--D-ALANINE LIGASE A [Corynebacterium glutamicum ATCC
           13032]
          Length = 360

 Score =  288 bits (738), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 94/349 (26%), Positives = 155/349 (44%), Gaps = 57/349 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +AV+ GG SSE  VS  S  A  + L+   + V  + +      V+    P         
Sbjct: 11  VAVVYGGRSSEHSVSCVSAGAIMAHLDPEKYDVIPVGITVDGAWVVGETDPQKLTLIDRT 70

Query: 52  ---------------------------------DLAFNVLHGNFGEDGLVQAILELLEIP 78
                                            D+ F VLHG FGEDG VQ +  L +IP
Sbjct: 71  MPEVEHHEEVRPSLDPAHRGEFHFSDGSLYATADVIFPVLHGRFGEDGTVQGLFALSDIP 130

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN---RFTMDSQHLISPPYVIKPLKG 135
               G+LASA  MDK  +K+++++ G+PV   +++      T   ++L+  P  +KP +G
Sbjct: 131 VVGPGVLASAAGMDKEYTKKLMAAEGLPVGREVILRDRTELTEAEKNLLGLPVFVKPARG 190

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195
           GSS+GI  +   +     +  + +  H +++++E  + G E+ CGV+      +      
Sbjct: 191 GSSIGISRVTAWEDFNKAVGLARA--HDEKVIVESEIVGSEVECGVLQYPDGRIVASVPA 248

Query: 196 --------KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
                      FY ++ KY     T  +PA +     + +Q LA  + QA+ C G++R D
Sbjct: 249 LLSGTESGAGGFYDFDTKYLDNVVTAEIPAPLDEKTTELIQSLAVESFQALACEGLARVD 308

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           F            EIN  PG TP+S++P+M   +G ++ ELL  +V+ A
Sbjct: 309 FFVTA--NGPVLNEINTMPGFTPISMYPQMFTASGVAYEELLDVLVQQA 355


>gi|329122144|ref|ZP_08250752.1| D-alanine-D-alanine ligase [Dialister micraerophilus DSM 19965]
 gi|327466951|gb|EGF12467.1| D-alanine-D-alanine ligase [Dialister micraerophilus DSM 19965]
          Length = 314

 Score =  288 bits (738), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 96/307 (31%), Positives = 157/307 (51%), Gaps = 11/307 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS-VGLVLAHLKPDLAFNVLH 59
           + VLMGG S E E+S  +GKA  +AL   G+ V  ++     V   L  L  ++ F  LH
Sbjct: 11  ITVLMGGPSDEAEISRKTGKAIVNALSGLGYSVVGLEYHPECVLKQLQELNTEIVFLALH 70

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G +GEDG +Q +LEL  IPYT SG+ +SA++MDK+ +  +    G+ +  S+        
Sbjct: 71  GKYGEDGTIQGLLELAGIPYTGSGVSSSAITMDKIFTAHIFKEQGIRMAKSMSFKEKEGI 130

Query: 120 S------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
                      + P V+KP   GS++GI ++K+   +   + +   +    ++L+E+Y+D
Sbjct: 131 DFVNNQILKNFNMPVVLKPACEGSTIGIEIVKESNDLKDAICRV--FKVESRILVEEYLD 188

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           G E T  VM   ++ V +I  P S  Y +  KY+   + +++PA I  ++  E+Q +A  
Sbjct: 189 GEEFTVPVMNGKAMPVIQI-CPHSGQYDFHSKYTKGATDYLVPAPISEELKSEMQLMAEK 247

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            +    C G+ R D      +   + LE N  PGMT  S+ P+ AA  G SF +L   ++
Sbjct: 248 GYHVAECEGVVRFDMR-TDHNGVPYVLEANSIPGMTETSLVPKSAANIGISFAKLCEMIL 306

Query: 294 EDASCLR 300
           E A   +
Sbjct: 307 EGAGLNK 313


>gi|50914531|ref|YP_060503.1| D-alanyl-alanine synthetase A [Streptococcus pyogenes MGAS10394]
 gi|68051961|sp|Q5XB93|DDL_STRP6 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|50903605|gb|AAT87320.1| D-alanine--D-alanine ligase [Streptococcus pyogenes MGAS10394]
          Length = 348

 Score =  288 bits (738), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 87/334 (26%), Positives = 158/334 (47%), Gaps = 41/334 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKV--------------------------- 33
           + +L GG S+EREVS+ S ++   A+    F V                           
Sbjct: 6   LVLLYGGRSAEREVSVLSAESVMRAVNYDKFLVKTYFITQMGQFIRTQQFSEKPSESERL 65

Query: 34  ---SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
                I++ + +     + +  + F VLHG  GEDG +Q  LE+L +PY  + +++S+++
Sbjct: 66  MTNETIELTQKIKPSDIYEEGAVVFPVLHGPMGEDGSIQGFLEVLRMPYIGTNVMSSSIA 125

Query: 91  MDKMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
           MDK+ +K+V+ S G+P     +      +    +++   ++ P  +KP   GSS+GI   
Sbjct: 126 MDKITTKRVLESIGIPQVAYTVYIDGQDLEACLVETLARLTFPIFVKPANMGSSVGISKA 185

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202
           +    +   +  +    +  ++LIEQ V   E+  G++G+  +  T     +   DFY Y
Sbjct: 186 QTKVELRKAIQLAL--TYDSRVLIEQGVVAREIEVGLLGNDKVKSTLPGEVIKDVDFYDY 243

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
           + KY     T  +PA +   I  E++  A +A +A+G  G+SR DF       +V+  E+
Sbjct: 244 QAKYVDNKITMAIPADVDQSIVTEMRSYAEVAFKALGGCGLSRCDFFLT-QDGQVYLNEL 302

Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           N  PG T  S++P +    G ++ +L+  +V  A
Sbjct: 303 NTMPGFTQWSMYPLLWENMGLAYPDLIEELVTLA 336


>gi|254967001|gb|ACT97536.1| putative D-alanyl-alanine synthetase A [uncultured organism]
          Length = 322

 Score =  288 bits (737), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 89/323 (27%), Positives = 159/323 (49%), Gaps = 33/323 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-----------------VDRSVG 43
           +A++ GG SSE  VSL S +   S ++   + +  ++                 +DR+  
Sbjct: 5   IAIVAGGDSSELPVSLRSAQGIYSFIDKERYNLYIVEMEGHRWEVILPDGTKTPIDRNDF 64

Query: 44  LVLAHLK---PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
             + + +    D A+  +HG  GE+G++Q   +LL IPY+   +L SA++ +K    Q +
Sbjct: 65  GFMENGEKKLFDFAYITIHGTPGENGILQGYFDLLGIPYSSCNVLVSAITFNKFTCNQYL 124

Query: 101 SSCGVPVCPSILVNRF----TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
              G+ V  S+++ +       +    I  P  IKP  GGSS G+  +K ++ I   +  
Sbjct: 125 KGFGIRVSESLILRKGFEITDQEVISKIGLPCFIKPNAGGSSFGVTKVKTEEEIQPAI-- 182

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNST 212
             +++  D+++IE Y+ G E+TCG            +TE+ V  ++F+ Y+ KY+     
Sbjct: 183 EKAFHESDEVMIEAYMKGTEVTCGCYKTKDKEVVFPITEV-VTDNEFFDYDAKYN-GQVQ 240

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
            + PA++P D  + V+ L    +  +GC GI R D++      KV  LEIN  PGMT  S
Sbjct: 241 EITPARLPEDTAERVRLLTSAIYDILGCSGIIRIDYIITE-GDKVNLLEINTTPGMTATS 299

Query: 273 IFPEMAAYAGYSFRELLLWMVED 295
             P+    AG   ++++  ++E+
Sbjct: 300 FIPQQVRAAGLDIKDVMTDIIEN 322


>gi|42518194|ref|NP_964124.1| D-alanine-D-alanine ligase [Lactobacillus johnsonii NCC 533]
 gi|81832312|sp|Q74LS5|DDL_LACJO RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|41582478|gb|AAS08090.1| D-alanine-D-alanine ligase [Lactobacillus johnsonii NCC 533]
          Length = 361

 Score =  288 bits (737), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 92/342 (26%), Positives = 159/342 (46%), Gaps = 48/342 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------DRSVGLVLAHLK-- 50
           + ++ GG SSE EVS+ S       ++   F V  + +        D     VL + K  
Sbjct: 7   VGLIFGGNSSEYEVSIMSAHNIYEEIDTNKFDVYPMWITNDGYLADDADSRKVLDNPKME 66

Query: 51  ---------------------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
                                 D+ F ++HGN GEDG +Q +  +L+ P+    +LA+A+
Sbjct: 67  VANPHKVANISNIIELKDRPEIDVFFPIVHGNLGEDGCLQGLFRVLDKPFVGDDVLAAAV 126

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH-----------LISPPYVIKPLKGGSS 138
           +MDK  +K +    GVPV   I V RF  +               +     +KP   GSS
Sbjct: 127 TMDKEMTKILAQRAGVPVAKWIAVKRFEYNDPDNEKLDYEYVASQLGSDLFVKPSNQGSS 186

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL---DVTEIAVP 195
           +G+  +  ++   + L  + ++ + D++L+E+ V G E+   V+G+       V +I   
Sbjct: 187 VGVSHVTNEKEYKVAL--AEAFKYDDKVLVEETVHGTEVETAVLGNDKPIVAGVGQIINA 244

Query: 196 KSDFYSYELKYSSLN-STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
           K  FY+YE KY   + ST  +PAK+P  I + V++ A    QA  C G++R D +     
Sbjct: 245 KDSFYTYENKYDDDSTSTLEIPAKLPEGIVETVRKNALKVFQATECSGLARIDSMLRSED 304

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            +V   E+N  PG T +S++P++    G  + +L+  +++ A
Sbjct: 305 NEVVLTEVNALPGFTNISMYPKLFEEIGIPYTDLITKLIDYA 346


>gi|297626506|ref|YP_003688269.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)
           [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
 gi|296922271|emb|CBL56843.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)
           [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
          Length = 375

 Score =  288 bits (737), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 94/359 (26%), Positives = 149/359 (41%), Gaps = 66/359 (18%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44
           +AV+ GG S+E EVS  +      A++   ++V  I +D+S                   
Sbjct: 11  VAVIFGGQSNEHEVSCLTAAGVLGAIDQTRYRVHGIGIDKSGLWHRYSVDEIRALQIVDG 70

Query: 45  ------------------------------VLAHLKPDLAFNVLHGNFGEDGLVQAILEL 74
                                         + A    D+AF ++HG + EDG VQ  LE+
Sbjct: 71  VMPSIGADHPLAELFRDAGGVHLATLDEDRLTAREPIDVAFPLMHGAYAEDGTVQGKLEM 130

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH---------LIS 125
           L + Y   G+ +SAL MDK  +  V+ + GVP    + V R                 + 
Sbjct: 131 LGLKYVGCGVTSSALGMDKEYTHTVLEAAGVPTAAWVRVGRDEWMRDPDAIVARIGSQLG 190

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGD 184
            P  +KP +GGSS+GI  +    S+       ++     ++L+EQ V G  E+ CG++G 
Sbjct: 191 YPVFVKPARGGSSVGISRVTGPDSL--AAAIDAARLVDPKVLVEQAVVGAREVECGILGG 248

Query: 185 -----ASLDVTEIAVP-KSDFYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQA 237
                 +    EI +  +  FY Y  KY       +  PA +   + + VQ LA     A
Sbjct: 249 DGTAPRASHTGEIVMHTEDRFYDYRAKYLPEEQVDLRVPAGLEPQVERRVQELALQCFTA 308

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           + C G++R D    P   +V   EIN  PG T  S++P M   +G  + EL+  ++  A
Sbjct: 309 LDCEGLARVDTFVLP-DGQVLINEINTMPGFTKFSMYPNMWRASGIDYPELIDQLIALA 366


>gi|329666505|gb|AEB92453.1| D-alanine-D-alanine ligase A [Lactobacillus johnsonii DPC 6026]
          Length = 361

 Score =  288 bits (737), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 89/342 (26%), Positives = 156/342 (45%), Gaps = 48/342 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           + ++ GG SSE EVS+ S       ++   F V  + +     L                
Sbjct: 7   VGLIFGGNSSEYEVSIMSAHNIYEEIDTNKFDVYPMWITNDGYLADDADSRKVLDNPQME 66

Query: 50  --------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
                               + D+ F ++HGN GEDG +Q +  +L+ P+    +LA+A+
Sbjct: 67  VANPHKVANISNIIELKDRPEIDVFFPIVHGNLGEDGCLQGLFRVLDKPFVGDDVLAAAV 126

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH-----------LISPPYVIKPLKGGSS 138
           +MDK  +K +    GVPV   I V RF  +               +     +KP   GSS
Sbjct: 127 TMDKEMTKILAQRAGVPVAKWIAVKRFEYNDPDNEKLDYEYVASQLGSDLFVKPSNQGSS 186

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL---DVTEIAVP 195
           +G+  +  ++   + L  + ++ + D++L+E+ V G E+   V+G+       V +I   
Sbjct: 187 VGVSHVTNEKEYKVAL--AEAFKYDDKVLVEETVHGTEVETAVLGNDKPIVAGVGQIINA 244

Query: 196 KSDFYSYELKYSSLN-STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
           K  FY+YE KY   + ST  +PAK+P  I + V++ A    QA  C G++R D +     
Sbjct: 245 KDSFYTYENKYDDDSTSTLEIPAKLPEGIVETVRKNALKVFQATECSGLARIDSMLRSED 304

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            +V   E+N  PG T +S++P++    G  + +L+  +++ A
Sbjct: 305 NEVVLTEVNALPGFTNISMYPKLFEEIGIPYTDLITKLIDYA 346


>gi|241890057|ref|ZP_04777355.1| D-alanine--D-alanine ligase [Gemella haemolysans ATCC 10379]
 gi|241863679|gb|EER68063.1| D-alanine--D-alanine ligase [Gemella haemolysans ATCC 10379]
          Length = 355

 Score =  288 bits (737), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 89/335 (26%), Positives = 155/335 (46%), Gaps = 46/335 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI------------------------ 36
           + ++ GG S+E  VSL + K+  +A++   + V  I                        
Sbjct: 6   IGIVYGGKSAEHSVSLLTAKSIINAIDKEKYNVFPIFISLEGNWARGEKITSEITDQHDL 65

Query: 37  -----DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSM 91
                D D S  L     K D+ F VLHG  GEDG +Q +LE+++I Y  + +L+SA  M
Sbjct: 66  VFSNFDNDISGLLFEDGRKFDIVFPVLHGPNGEDGTIQGLLEIMDIAYVGNNVLSSAAGM 125

Query: 92  DKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPLKGGSSLGII 142
           DK+  KQ+ ++  +P  P +    +T          +    +  P  +KP   GSS+GI 
Sbjct: 126 DKVVMKQLFAAYDLPQLPYVHFIEYTWKNKKEALIAEINENLKYPLFVKPANLGSSVGIS 185

Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIA----VPKS 197
               +  +   + ++  +    ++++EQ   G  E+   V+G   +  T+      +  +
Sbjct: 186 RCNDEAELVKGIEEALKF--DKKIVVEQGAVGAKEIEVAVLGYNEVKTTDPGEIVNISST 243

Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
           +FY YE KY+   S   +PA I   +Y + + +A  A +AI   G+ R+DF +     ++
Sbjct: 244 EFYDYETKYTDGQSRMDIPAPIDTTLYPKFREMAATAFRAISGSGLVRADFFYTK-EGEI 302

Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           F  E+N  PG TP S+FP + A    S+ E++  +
Sbjct: 303 FINEVNTMPGFTPFSMFPSLWANMNVSYSEIIEEL 337


>gi|296119642|ref|ZP_06838200.1| D-alanine--D-alanine ligase [Corynebacterium ammoniagenes DSM
           20306]
 gi|295967525|gb|EFG80792.1| D-alanine--D-alanine ligase [Corynebacterium ammoniagenes DSM
           20306]
          Length = 358

 Score =  288 bits (737), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 88/351 (25%), Positives = 155/351 (44%), Gaps = 56/351 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLA------------- 47
           +AV+ GG S+E  VS  +  A  S L+   +++  I + +     +              
Sbjct: 7   VAVIYGGKSTEHSVSCVTAGAIMSHLDPERYEIIPIAITKEGTWTIGVTEGLEIKDGKLP 66

Query: 48  ----------------------------HLKPDLAFNVLHGNFGEDGLVQAILELLEIPY 79
                                       H   D+ F  LHG  GEDG VQ + E+  IPY
Sbjct: 67  EVEEADELTVSLNPRGDGQIHNVTRGTLHADIDVVFPALHGVNGEDGTVQGVFEMAGIPY 126

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVN---RFTMDSQHLISPPYVIKPLKGG 136
             +G+++SA+ MDK   ++++ + G+PV   +++      T   +  +  P  +KP +GG
Sbjct: 127 VGTGVMSSAVCMDKEFMRKLMVAEGLPVTRDVILRGRTELTDAEKDHLGLPVFVKPARGG 186

Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK 196
           SS+G+  +     +P  + +++++   D++++E  + G E+  GV+   + ++      K
Sbjct: 187 SSIGVSKVNTWDELPAAIAEAAAF--DDKVIVEAELVGAEVEVGVLEYPTGELVASVPAK 244

Query: 197 --------SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                     FY ++ KY     T  +PA       K +Q LA    QA+ C G+SR DF
Sbjct: 245 LNGTEDSDEGFYGFDTKYLDNTVTATIPAPFDEATTKALQDLAVETFQALNCEGLSRVDF 304

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
                       EIN  PG TP+S++P++   +G S+ ELL  ++  A   
Sbjct: 305 FVTEQG--PMINEINTLPGFTPISMYPQVFLASGVSYPELLDTLIATALAK 353


>gi|56123460|gb|AAV74569.1| D-alanine:D-lactate ligase [Eggerthella lenta]
          Length = 342

 Score =  288 bits (737), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 84/337 (24%), Positives = 146/337 (43%), Gaps = 44/337 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           +A++ GG S E +VS+ S    A+ ++   F    I + ++    L              
Sbjct: 6   VAIIFGGCSEEHDVSVKSAIEIAANIDTEKFDPHYIGITKNGVWKLCKKPCTEWEADSLP 65

Query: 47  --------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
                                  + D+AF VLHG  GEDG +Q +  L  IPY    I +
Sbjct: 66  AILSPDRKTHGLLVMKESEYETRRIDVAFPVLHGKCGEDGAIQGLFVLSGIPYVGCDIQS 125

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           SA  MDK  +  +  + G+ V    ++++        ++ P  +KP + GSS G+  +  
Sbjct: 126 SAACMDKSLAYILTKNAGIAVPEFQIIDKGDKPEAGALTYPVFVKPARSGSSFGVTKVNG 185

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSY 202
            + +   +   ++  +  ++LIEQ +   E+ C VMG+       +V +I +    F  +
Sbjct: 186 TEELNAAI--EAAGQYDGKILIEQAISVCEVGCAVMGNEDDLIVGEVDQIRLSHGIFRIH 243

Query: 203 ---ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
              E +  S N+   +PA IP++    VQ  A   ++ +GCRG++R D         +  
Sbjct: 244 QENEPEKGSENAMITVPADIPVEERNRVQETAKKVYRVLGCRGLARVDLFLQE-DGGIVL 302

Query: 260 LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            E+N  PG T  S +P M A AG +   L+  ++  A
Sbjct: 303 NEVNTMPGFTSYSRYPRMVAAAGITLPALIDSLITLA 339


>gi|11345392|gb|AAG34683.1|AF310953_1 ligase VanB2 [Enterococcus faecium]
          Length = 342

 Score =  288 bits (737), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 84/337 (24%), Positives = 146/337 (43%), Gaps = 44/337 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           +A + GG S E +VS+ S    A+ ++   F    I + ++    L              
Sbjct: 6   VATIFGGCSEEHDVSVKSAIEIAANIDTEKFDPHYIGITKNGVWKLCKKPCTEWEADSLP 65

Query: 47  --------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
                                  + D+AF VLHG  GEDG +Q +  L  IPY    I +
Sbjct: 66  AILSPDRKTHGLLVMKESEYETRRIDVAFPVLHGKCGEDGAIQGLFVLSGIPYVGCDIQS 125

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           SA  MDK  +  +  + G+ V    ++++        ++ P  +KP + GSS G+  +  
Sbjct: 126 SAACMDKSLAYILTKNAGIAVPEFQMIDKGDKPEAGALTYPVFVKPARSGSSFGLTKVNG 185

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSY 202
            + +   +   ++  +  ++LIEQ + G E+ C VMG+       +V +I +    F  +
Sbjct: 186 TEELNAAI--EAAGQYDGKILIEQAISGCEVGCAVMGNEDDLIVGEVDQIRLSHGIFRIH 243

Query: 203 ---ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
              E +  S N+   +PA IP++    VQ  A   ++ +GCRG++R D         +  
Sbjct: 244 QENEPEKGSENAMITVPADIPVEERNRVQETAKKVYRVLGCRGLARVDLFLQE-DGGIVL 302

Query: 260 LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            E+N  PG T  S +P M A AG +   ++  ++  A
Sbjct: 303 NEVNTLPGFTSYSRYPRMMAAAGITLPAMIDSLITLA 339


>gi|295397629|ref|ZP_06807704.1| D-alanine-D-alanine ligase [Aerococcus viridans ATCC 11563]
 gi|294974092|gb|EFG49844.1| D-alanine-D-alanine ligase [Aerococcus viridans ATCC 11563]
          Length = 350

 Score =  288 bits (737), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 81/335 (24%), Positives = 151/335 (45%), Gaps = 44/335 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH---LKPD----- 52
           + VL GG S+E ++S+ +  A    ++     V+ + +DR            KPD     
Sbjct: 3   IIVLFGGKSAEHDISILTATAIMQNIQYDRHSVTPVYIDRQGHWFKGSNMTEKPDAQVNF 62

Query: 53  ---------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSM 91
                                + F  LHG  GEDG +Q + E L + Y  +G+LAS+  M
Sbjct: 63  QLDQVGQAIVPTDVLLEGTDQIVFPALHGPNGEDGTIQGLFESLNVAYVGAGVLASSAGM 122

Query: 92  DKMRSKQVVSSCGVPVCPSILVNRFTMDSQH---------LISPPYVIKPLKGGSSLGII 142
           DK+ SK +++  G+P  P + +  +  +             ++ P  +KP   GSS+G+ 
Sbjct: 123 DKIVSKHLLNQAGLPQVPFVALTSYEWEKDQEVAIEKVTNELAYPVFVKPANMGSSVGVS 182

Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAV--PKSDF 199
             +      L    + ++ +  ++L+E  V +  E+   ++G+  + V+          F
Sbjct: 183 --EAIDDASLLAALTLAFRYDRRVLVETSVQNPREVELAILGNDEVFVSVPGELAKGQGF 240

Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
           Y+YE KY    +  ++PA I      ++Q  A  A  A+   G+SR+DF     + +++ 
Sbjct: 241 YNYEEKYLKNTTEMIIPAAIDEPTVAKLQDYARKAFLALDGSGLSRADFFLTE-TGEIYI 299

Query: 260 LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            E+N  PG T  S++P +   +G S+ +LL  +++
Sbjct: 300 NEVNTLPGFTQFSMYPSLWEASGKSYADLLEELIQ 334


>gi|194468272|ref|ZP_03074258.1| D-alanine/D-alanine ligase [Lactobacillus reuteri 100-23]
 gi|194453125|gb|EDX42023.1| D-alanine/D-alanine ligase [Lactobacillus reuteri 100-23]
          Length = 378

 Score =  288 bits (737), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 91/343 (26%), Positives = 158/343 (46%), Gaps = 52/343 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS------------------- 41
           +A+L GG SSE +VS  S      AL+   + VS     +                    
Sbjct: 7   IALLFGGNSSEHDVSKRSAHNIYDALDKEKYDVSLFMFTKDGILLGNEDSQKIFDGEPED 66

Query: 42  ------------------VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                             +  +    + D  F V+HGN GEDG +Q + +LL  PY  S 
Sbjct: 67  QVVAEAYQKMNMSSPLAPIMALNEQKEIDFFFPVIHGNLGEDGTIQGLFKLLNKPYVGSN 126

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVIKPLKGGS 137
           I ASA+S DK  +K+++S  G+   P ++V             +  +     +KP K GS
Sbjct: 127 IAASAMSFDKDLTKKIISQAGIRNTPYVVVTPENRADYSWGRIEEKLGNLTFVKPAKQGS 186

Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVT---EIA 193
           S+GI  +   +     L  +  +++  ++L+EQ + +  E+   ++G+     +    + 
Sbjct: 187 SVGIHRVTNAEEYEKALDDAFKYDY--KILVEQGIANPQEIEISILGNEHPIASKLGAVR 244

Query: 194 VPKSD-FYSYELKYSSLNS-THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
           VPK D FY YE K+   +     LP K+P  +  E+  +A  A++A+G +G++R DFL D
Sbjct: 245 VPKDDPFYDYENKFVDASGVVFELPVKLPQYLVDEITDMALKAYKALGMKGMARIDFLVD 304

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             +   +  E N  PG T +S++P+M   +G S+ +L+  +++
Sbjct: 305 -SNNVPYLGEPNTLPGFTNISLYPQMWEVSGISYSDLIDRLIQ 346


>gi|139439868|ref|ZP_01773233.1| Hypothetical protein COLAER_02267 [Collinsella aerofaciens ATCC
           25986]
 gi|133774796|gb|EBA38616.1| Hypothetical protein COLAER_02267 [Collinsella aerofaciens ATCC
           25986]
          Length = 321

 Score =  288 bits (737), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 109/304 (35%), Positives = 171/304 (56%), Gaps = 15/304 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFK-VSQIDVD-RSVGLVLAHLKPDLAFNVL 58
           +AVL GG S+ERE+SL+SGK    AL++AG+  V  ID       + +A    D+AF  +
Sbjct: 11  VAVLAGGHSAEREISLNSGKNVVVALKEAGYTSVELIDTAADDFMVTMATGGFDVAFIAM 70

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN-RFT 117
           HG  GEDG +Q  +E L IPYT SG+LASA   DK  SK + +  G+P+ P + +     
Sbjct: 71  HGAGGEDGAMQGAMETLGIPYTASGVLASACGADKEVSKLLYAKAGIPIAPGLALEVGDE 130

Query: 118 MDSQHLI---SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
           +D  H++        +KP   GSS GI ++ +   +P  + ++ +  +GD++L+E+ ++G
Sbjct: 131 VDIDHIVEVCGERCFVKPAVNGSSYGISLVHEPSELPAAIAKAFA--YGDKVLVEKCIEG 188

Query: 175 IELTCGVMGD---ASLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            E+T GV G+    +L + EI  P+  +FY  ++KY      H +PA+I  + Y   Q L
Sbjct: 189 TEITVGVYGEDDVRALPIVEIRKPEDCEFYDLDVKYVDPTDIHRIPAQISPENYARAQEL 248

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYA-GYSFRELL 289
           A  AH+A+GC GISRSDF+          LE N  PGMT  S++P+   +    +F ++ 
Sbjct: 249 ACAAHKALGCLGISRSDFIVSEDG--PVILETNTIPGMTDTSLYPDEIRHTDDMTFPQVC 306

Query: 290 LWMV 293
             ++
Sbjct: 307 DSLI 310


>gi|304383943|ref|ZP_07366400.1| D-alanine-D-alanine ligase [Prevotella marshii DSM 16973]
 gi|304335021|gb|EFM01294.1| D-alanine-D-alanine ligase [Prevotella marshii DSM 16973]
          Length = 333

 Score =  288 bits (737), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 96/328 (29%), Positives = 156/328 (47%), Gaps = 37/328 (11%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-----------------DRSVG 43
           +A++ GG SSE +VSL S +   S  +   + V  +D+                 DR+  
Sbjct: 8   IAIVCGGDSSEHDVSLRSAQGLYSFFDKERYNVYIVDIKGQDWRVNLPNGDVAPIDRNDF 67

Query: 44  LVLAHLKP---DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
             + + K    D A+  +HG  GE+GL+Q   ELL IPY+ SG+L  AL+ +K    Q +
Sbjct: 68  SFMENGKFMLFDYAYITIHGTPGENGLLQGYFELLHIPYSTSGVLVEALTFNKFVLNQYL 127

Query: 101 SSCGVPVCPSILVNRFTMDS------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154
              GV V  SILV R   D       +  I  P+ +KP   GSS G+  +K    +   L
Sbjct: 128 RGYGVSVAESILVRRGFEDQIDEKTIEEKIGLPFFVKPAADGSSFGVSKVKNIDQLAPAL 187

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS----LDVTEIAVPKSDFYSYELKYSSLN 210
               ++   D+++IE Y+ G E++ G          L  TE+ V  ++F+ Y+ KY+   
Sbjct: 188 RN--AFMESDEVMIESYLKGTEISIGCYKTREKSVVLPATEV-VTSNEFFDYDAKYN-GQ 243

Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR---KVFWLEINVQPG 267
              + PA++  +  + V+++    +  + C GI R D++         K+  LE+N  PG
Sbjct: 244 VQEITPARLSEETAERVKQITHAIYDILHCNGIIRIDYIITKNEDGTEKINMLEVNTTPG 303

Query: 268 MTPVSIFPEMAAYAGYSFRELLLWMVED 295
           MT  S  P+    AG +  E+L  +VE+
Sbjct: 304 MTATSFIPQQIRAAGLNITEVLTEIVEN 331


>gi|309777767|ref|ZP_07672715.1| D-alanine--D-alanine ligase [Erysipelotrichaceae bacterium 3_1_53]
 gi|308914451|gb|EFP60243.1| D-alanine--D-alanine ligase [Erysipelotrichaceae bacterium 3_1_53]
          Length = 354

 Score =  288 bits (737), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 90/349 (25%), Positives = 149/349 (42%), Gaps = 55/349 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44
           +A++ GG SSE  VSL S  +    +    +++  I + +                    
Sbjct: 6   LAIIFGGKSSEYPVSLHSAGSLIHKINKERYELIFIGISKDGKWYAYDGDVEGIEHDTWL 65

Query: 45  --------------------------VLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIP 78
                                         ++ D  F +LHG  GEDG +Q + EL  IP
Sbjct: 66  QDKHCTPCVLSSSEGCKGFLKLHADGTFTRMEVDCIFPILHGKNGEDGTIQGLFELSGIP 125

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--------MDSQHLISPPYVI 130
           Y   G ++SA+ MDK  +  V+   G+   P + V             D++  +  P  I
Sbjct: 126 YVGCGHMSSAICMDKEMAHIVMEHAGISCAPFVCVYEQDDLDYRAVYEDAKEKLGLPIFI 185

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--- 187
           KP   GSS GI  ++        +  +   +   ++++E  ++G E+ C VMG+  L   
Sbjct: 186 KPANAGSSFGIHKMESFDGFEEAMKDAFYHDGKGKVILETTIEGFEIGCAVMGNKELFAG 245

Query: 188 DVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
            V EI    + F+ YE KY  ++S    PA+I  +++ + + +A  A+ A+ C+G++R D
Sbjct: 246 SVDEIETA-APFFDYEGKYEMVDSHIYCPARISKELFAQAREIAKKAYCAMNCKGMTRVD 304

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
               P   K+   E+N  PG T  S +P M   AG  F EL+  +V  A
Sbjct: 305 MFVTP-DEKIILNEVNTIPGFTDTSRYPTMMKEAGIPFPELIDRLVALA 352


>gi|315937072|gb|ADU56080.1| hypothetical protein CA878-2 [uncultured organism CA878]
          Length = 345

 Score =  288 bits (737), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 88/339 (25%), Positives = 150/339 (44%), Gaps = 44/339 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           + ++ GG   E  +S+ S +  A  L+   ++   I + +S    L              
Sbjct: 6   IGIIFGGCYEEHPISVKSVREVAKNLDTEKYEPFYIGITKSGAWKLCDGPDEGWENSSRS 65

Query: 47  --------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
                                 +  D    +LHG  GEDG +Q ++E+  IPY    I +
Sbjct: 66  VVLSPDRSVHGLLVLEQGRYETISLDAVLPILHGKLGEDGAMQGLMEIAGIPYAGCDIQS 125

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           SAL MDK  +  V  S G+      +V          ++ P  +KP + GSS G+  + +
Sbjct: 126 SALCMDKSLTYIVARSAGIATPNFWIVTADDDIDPGQLTYPVFVKPARSGSSFGVSKVSR 185

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS----LDVTEIAVPKSDFYSY 202
           ++ +P  +   ++  +  ++LIE+ V   E+ C V+G+ +     +V  +A+    F  +
Sbjct: 186 EEELPSAVK--TAREYDSKVLIEEAVVASEIGCAVLGNDADLTTGEVDRVALSHGFFKIH 243

Query: 203 E---LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
           +    +  S NST ++PA IP +    VQ  A + ++A+GCRG++R D        +V  
Sbjct: 244 QESNPEQGSENSTFIVPADIPDESRARVQETAKVIYRALGCRGLARVDMFL-KEDGQVVL 302

Query: 260 LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
            E+N  PGMT  S +P M A AG    E++  MV  A  
Sbjct: 303 NEVNTLPGMTSYSRYPRMMAAAGMPLGEVIDRMVSLALA 341


>gi|56201416|dbj|BAD72951.1| D-Ala:D-Ala ligase [Enterococcus faecalis]
          Length = 356

 Score =  287 bits (736), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 80/344 (23%), Positives = 151/344 (43%), Gaps = 51/344 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---LAHLKPD----- 52
           + +L GG S E +VS+ S  +  +A+    ++V  + + +    V   L   +P      
Sbjct: 3   IILLYGGRSEEHDVSVLSAYSVLNAIYYKYYQVQLVFISKDGQWVKGPLLSERPQNKEVL 62

Query: 53  -----------------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                        + F VLHG  GEDG +Q  +E + +PY  +G
Sbjct: 63  HLTWAQTPEETGEFSGKRISPSEIYEEEAIVFPVLHGPNGEDGTIQGFMETINMPYVGAG 122

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPLK 134
           +LAS  +MDK+ +K ++ + G+P  P + V R              +  +  P  +KP  
Sbjct: 123 VLASVNAMDKIMTKYLLQTVGIPQVPFVPVLRSDWKGNPKEVFEKCEGSLIYPVFVKPAN 182

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI-- 192
            GSS+GI  ++  + +        ++ +  + ++EQ ++  E+   ++G+  +  T    
Sbjct: 183 MGSSVGISKVENREELQE--ALEEAFRYDARAIVEQGIEAREIEVAILGNEDVRTTLPGE 240

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            V    FY Y+ KY +      +PA +P ++  + Q  A  A+  +   G+SR DF    
Sbjct: 241 VVKDVAFYDYDAKYINNTIEMQIPAHVPEEVAHQAQEYAKKAYIMLDGSGLSRCDFFLTS 300

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              ++F  E+N  PG T  S++P +    G  + +L+  +++ A
Sbjct: 301 K-NELFLNELNTMPGFTDFSMYPLLWENMGLKYSDLIEELIQLA 343


>gi|119025204|ref|YP_909049.1| D-alanyl-alanine synthetase A [Bifidobacterium adolescentis ATCC
           15703]
 gi|166198475|sp|A0ZZT4|DDL_BIFAA RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|118764788|dbj|BAF38967.1| D-alanine-D-alanine ligase [Bifidobacterium adolescentis ATCC
           15703]
          Length = 378

 Score =  287 bits (736), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 87/370 (23%), Positives = 153/370 (41%), Gaps = 77/370 (20%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           + V+ GG + E  +S  S  +   AL+   F+   + + +    ++    P         
Sbjct: 6   IVVMYGGKADEHSISCISAASALRALDTDKFEAIPVGITKDGKWIVNGENPLGWSLDEGL 65

Query: 52  --------------------------------------DLAFNVLHGNFGEDGLVQAILE 73
                                                 D  F VLHG +GEDG +Q + E
Sbjct: 66  PTVEKTPGAKDVVLEVALGQDGFFAREDDGTMTPFGHVDAVFPVLHGPYGEDGTIQGLFE 125

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD-------------- 119
           ++ +PY   G+LASA  MDK  +K ++++ G+PV P I ++  + D              
Sbjct: 126 MMGVPYVGCGVLASAACMDKHYTKVLLAAAGIPVAPGITLDARSFDKASEFKTDADAIMA 185

Query: 120 --SQHLISPPYVIKPLKGGSSLGIIVIKKD-QSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
             S+  +  P  +KP + GSS G+  ++ +  +  L      +  H  ++L+EQ +D  E
Sbjct: 186 QVSEAGLQYPLFVKPSRAGSSFGVTKVEHEGDAAELAAAVYEASRHDWRILVEQGIDARE 245

Query: 177 LTCGVMGDASLDVTEIAVP-----------KSDFYSYELKYSSLNSTHVL-PAKIPLDIY 224
           + C V+   + +  + + P              FY ++ KY    ++HV  PA +P +  
Sbjct: 246 IECAVLCPKAGEAPQASWPGEIVLDKRAEGDDQFYDFDSKYMDAAASHVEVPANLPEETL 305

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
             V+  A  A  A+   G+SR D        KV   EIN  PG T +S++P+     G  
Sbjct: 306 NLVRETAKKAFVAVDGAGLSRVDTFVTK-DGKVMVNEINTMPGFTSISMYPKAWEATGVR 364

Query: 285 FRELLLWMVE 294
           + +L+  ++E
Sbjct: 365 YTDLITKLIE 374


>gi|210620965|ref|ZP_03292350.1| hypothetical protein CLOHIR_00293 [Clostridium hiranonis DSM 13275]
 gi|210154949|gb|EEA85955.1| hypothetical protein CLOHIR_00293 [Clostridium hiranonis DSM 13275]
          Length = 293

 Score =  287 bits (736), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 93/293 (31%), Positives = 146/293 (49%), Gaps = 9/293 (3%)

Query: 5   MGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLHGNFG 63
           MGGISSERE+SL SG     +L+   ++  ++ +D ++  +       D AF  LHG FG
Sbjct: 1   MGGISSEREISLKSGAGVFESLDREKYEPIKVVIDEKTDIITKIPDDVDFAFLALHGKFG 60

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFTMDS 120
           EDG VQ++LE  +IPY+  G L+SA+ MDK  SK++  + G+P    I V        D 
Sbjct: 61  EDGCVQSVLETRDIPYSGCGPLSSAMCMDKNISKKICKASGIPTADWITVKSIEEIDYDR 120

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P  +KP  GGSS+   +IK+   I   + Q        +++IEQY+ G E T  
Sbjct: 121 IEEMGYPVFVKPNSGGSSVATFMIKEKAGIEDAVRQGL--EVDTEVMIEQYLPGEECTSF 178

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           ++         I   + +F+ +E KYSS N        +   +  ++   + +   A  C
Sbjct: 179 ILDGEVFPTVSIK-SEQEFFDFEAKYSSDNGAVEEVVYLEESLQNKLNGYSRMCWDAFNC 237

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           R   R DF+    +   + LE+N  PG+T  S+ P  AA  G S+ +LL  ++
Sbjct: 238 RAYVRVDFII--SNGVPYVLELNTLPGLTATSLIPRSAAARGISYSQLLDKLI 288


>gi|94994662|ref|YP_602760.1| D-alanyl-alanine synthetase A [Streptococcus pyogenes MGAS10750]
 gi|166198509|sp|Q1J5W7|DDL_STRPF RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|94548170|gb|ABF38216.1| D-alanine--D-alanine ligase [Streptococcus pyogenes MGAS10750]
          Length = 348

 Score =  287 bits (736), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 87/334 (26%), Positives = 158/334 (47%), Gaps = 41/334 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKV--------------------------- 33
           + +L GG S+EREVS+ S ++   A+    F V                           
Sbjct: 6   LVLLYGGRSAEREVSVLSAESVMRAVNYDKFLVKTYFITQMGQFIKTQQFSEKPSESERL 65

Query: 34  ---SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
                I++ + +     + +  + F VLHG  GEDG +Q  LE+L +PY  + +++S+++
Sbjct: 66  MTNETIELTQKIKPSDIYEEGAVVFPVLHGPMGEDGSIQGFLEVLRMPYIGTNVMSSSIA 125

Query: 91  MDKMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
           MDK+ +K+V+ S G+P     +      +    +++   ++ P  +KP   GSS+GI   
Sbjct: 126 MDKITTKRVLESIGIPQVAYTVYIDGQDLEACLVETLARLTFPIFVKPANMGSSVGISKA 185

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202
           +    +   +  +    +  ++LIEQ V   E+  G++G+  +  T     +   DFY Y
Sbjct: 186 QTKVELRKAIQLAL--TYDSRVLIEQGVIAREIEVGLLGNDKVKSTLPGEVIKDVDFYDY 243

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
           + KY     T  +PA +   I  E++  A +A +A+G  G+SR DF       +V+  E+
Sbjct: 244 QAKYVDNKITMAIPADVDQSIVTEMRSYAEVAFKALGGCGLSRCDFFLT-QDGQVYLNEL 302

Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           N  PG T  S++P +    G ++ +L+  +V  A
Sbjct: 303 NTMPGFTQWSMYPLLWENMGLAYPDLIEELVTLA 336


>gi|312879691|ref|ZP_07739491.1| D-alanine--D-alanine ligase [Aminomonas paucivorans DSM 12260]
 gi|310782982|gb|EFQ23380.1| D-alanine--D-alanine ligase [Aminomonas paucivorans DSM 12260]
          Length = 314

 Score =  287 bits (736), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 106/306 (34%), Positives = 155/306 (50%), Gaps = 16/306 (5%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL--KPDLAFNVLHG 60
           V  GG S ER VSL SGKA A AL  AG +V   D+   +G+V A      DL F  LHG
Sbjct: 5   VACGGDSPERAVSLRSGKAVAEALAVAGHQVFLEDLPTCLGVVEAARDRGADLVFVALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG +QA+LE   IPYT SG  +   +MDK  ++ V    G+PV P  +  R     
Sbjct: 65  GWGEDGRLQAVLEAHGIPYTGSGPESCMAAMDKELTRAVFLDRGLPVPPGKVYEREDAAL 124

Query: 121 QHL------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
             L            +KP   GS++G+ ++ + + +     +  +  + D+L+ E+++ G
Sbjct: 125 PDLESLMAREGGHLALKPCCCGSTVGVSLVHRPEDLREA--RDLALKYDDRLVAERFIPG 182

Query: 175 IELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            ELT  V  +     +L   EI  P   FY Y  KY+S  + ++ PA +   +   V  L
Sbjct: 183 RELTVAVFEEGGRPRALPAIEIR-PHEGFYDYRNKYTSGATEYLCPAPLEEALAARVGSL 241

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A  AH+A+GCR  SR DF       + F LE+N  PGMT  S+ P+  A  G+SF ++  
Sbjct: 242 AEAAHRALGCRVYSRVDFRLSE-EGEPFLLEVNTAPGMTGTSLVPKAGAAVGWSFPQVTD 300

Query: 291 WMVEDA 296
            +V  +
Sbjct: 301 RIVRAS 306


>gi|291523552|emb|CBK81845.1| D-alanine--D-alanine ligase [Coprococcus catus GD/7]
          Length = 343

 Score =  287 bits (736), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 92/340 (27%), Positives = 154/340 (45%), Gaps = 51/340 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------------------- 38
           + VL GGIS+ER+VSL SG     AL+  G +V  +DV                      
Sbjct: 3   IVVLAGGISTERDVSLVSGMGIYKALKSKGHQVMLLDVFLGYANEDWKNVFEKDVDWTAS 62

Query: 39  ------DRSVGLVLAHLKPD------------------LAFNVLHGNFGEDGLVQAILEL 74
                        +  L+PD                  + F  LHG  GE+G +QA  +L
Sbjct: 63  VGAIKDQNPDIDAVKALRPDWKKNFFGPHVIDICQQADVVFMALHGENGENGKIQACFDL 122

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLK 134
             I YT +  ++SA+ M+K  SK + ++ GVP    I + +        +  P V+K   
Sbjct: 123 NGIRYTGTDYVSSAICMNKAISKDLFAAGGVPTPVGIRLKKGETPDVK-VPYPCVVKACC 181

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194
           GGSS+G+++   D+          ++ + ++++IEQY+ G E + GV+   +  + EIA 
Sbjct: 182 GGSSVGVVMANNDEEYAA--ALEEAFKYDEEVVIEQYIKGREFSVGVVDGKAYPIIEIAP 239

Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
               FY Y+ KY + ++    PA++  +    +Q  A  A + +  +  +R DF+ D   
Sbjct: 240 IH-GFYDYKNKYQAGSTIETCPAELSEEKTLAMQAAAEQAFKVLRLKNYARMDFMMDEKE 298

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
              + LE N  PGMTP S+ P+ A   G  + +L   +++
Sbjct: 299 D-FYCLEANTLPGMTPTSLLPQEAKVLGIEYADLCQLLID 337


>gi|296140535|ref|YP_003647778.1| D-alanine/D-alanine ligase [Tsukamurella paurometabola DSM 20162]
 gi|296028669|gb|ADG79439.1| D-alanine/D-alanine ligase [Tsukamurella paurometabola DSM 20162]
          Length = 362

 Score =  287 bits (736), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 94/354 (26%), Positives = 160/354 (45%), Gaps = 59/354 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50
           +AV+ GG SSE  VS  S  +    L+ A ++V  + + +S   VL+             
Sbjct: 8   VAVVFGGRSSEHAVSCVSAGSILGHLDPARYEVVPVGITQSGSWVLSDADAQSLRFADRA 67

Query: 51  ---------------------------------PDLAFNVLHGNFGEDGLVQAILELLEI 77
                                             D+ F VLHG +GEDG +Q +LE+  +
Sbjct: 68  LPSVPEGPTDLALLPGAELVSVSSDAAGSVLGSVDVVFPVLHGPYGEDGTLQGLLEMAGV 127

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ----HLISPPYVIKPL 133
           PY  +G+LASA  MDK  +K+++++ G+PV    ++ +   +      H +  P  +KP 
Sbjct: 128 PYVGAGVLASAAGMDKEFAKKLLAADGLPVGDFHVLRQRETEVPPEVLHRLGLPLFVKPA 187

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG--DASLDVTE 191
           +GGSS+GI  +    ++P  + ++  W    +++IE  V G E+  GV+   D ++  + 
Sbjct: 188 RGGSSIGITRVTDLAALPAAIAEARRW--DPKVIIEAAVIGREVEIGVLERPDGTVHASA 245

Query: 192 IAV------PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
           IA        +  FY +E KY    + + +PA +  +    +  LA  A  A   +G++R
Sbjct: 246 IAEIEMAADAEHAFYDFETKYLDDRAQYTVPADLTEEQTSAIAELAVRAFHAFDGQGLAR 305

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
            DF            E+N  PG T  S++P M A +G  + ELL  +++ A   
Sbjct: 306 VDFFQTAEG--PVINEVNTMPGFTSTSMYPRMWAESGIGYAELLSLLIDTALAR 357


>gi|289705874|ref|ZP_06502254.1| D-ala D-ala ligase [Micrococcus luteus SK58]
 gi|289557417|gb|EFD50728.1| D-ala D-ala ligase [Micrococcus luteus SK58]
          Length = 379

 Score =  287 bits (736), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 86/356 (24%), Positives = 145/356 (40%), Gaps = 65/356 (18%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL------------- 49
           +L GG SSE  +S  +      A +   + V  + V RS       L             
Sbjct: 19  LLFGGRSSEHPISCVTAAGVLHAADRQRWDVVPVGVARSGLWSHDELDVASFRLDGDVLP 78

Query: 50  ------------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPY 79
                                           D+ F +LHG +GEDG +Q + E L +PY
Sbjct: 79  EVPEPEAPVSLRALPDGTVELTAADGSSLGPVDVVFPLLHGPWGEDGTLQGMFESLGLPY 138

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL--------ISPPYVIK 131
              G+LASA+ MDK   K    + G+ V     +                  ++ P  +K
Sbjct: 139 VGCGVLASAVGMDKHFMKVSFQAAGLEVGAWETITARDWARDPEAALARAGALAYPLFVK 198

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD------A 185
           P + GSS GI  + +   +   + ++  +    ++++E  + G E+ C V+         
Sbjct: 199 PARAGSSFGITRVTEPAGLRAAVEEARRF--DPKVVVEAGIVGREIECAVLDGHGSAAPR 256

Query: 186 SLDVTEIAVPKSD----FYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           +    EI V   +    FY +E KY  +  +    PA++P +  + ++ LA  A +A+  
Sbjct: 257 ASLPGEIVVAHDEGETQFYDFESKYQDTGTTQLSCPAELPEEEIERLRALAIRAFEAVDG 316

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            G+ R DF F P   +    EIN  PG TP+S++P M    G S+ +L+  +++ A
Sbjct: 317 SGLGRCDFFFTP-DGRWVVNEINTMPGFTPISMYPAMWERTGLSYDDLISELLDLA 371


>gi|313891488|ref|ZP_07825101.1| D-ala D-ala ligase N-terminal domain protein [Dialister
           microaerophilus UPII 345-E]
 gi|313120065|gb|EFR43244.1| D-ala D-ala ligase N-terminal domain protein [Dialister
           microaerophilus UPII 345-E]
          Length = 311

 Score =  287 bits (736), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 96/307 (31%), Positives = 157/307 (51%), Gaps = 11/307 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS-VGLVLAHLKPDLAFNVLH 59
           + VLMGG S E E+S  +GKA  +AL   G+ V  ++     V   L  L  ++ F  LH
Sbjct: 8   ITVLMGGPSDEAEISRKTGKAIVNALSGLGYSVVGLEYHPECVLKQLQELNTEIVFLALH 67

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G +GEDG +Q +LEL  IPYT SG+ +SA++MDK+ +  +    G+ +  S+        
Sbjct: 68  GKYGEDGTIQGLLELAGIPYTGSGVSSSAITMDKIFTAHIFKEQGIRMAKSMSFKEKEGI 127

Query: 120 S------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
                      + P V+KP   GS++GI ++K+   +   + +   +    ++L+E+Y+D
Sbjct: 128 DFVNNQILKNFNMPVVLKPACEGSTIGIEIVKESNDLKDAICRV--FKVESRILVEEYLD 185

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           G E T  VM   ++ V +I  P S  Y +  KY+   + +++PA I  ++  E+Q +A  
Sbjct: 186 GEEFTVPVMNGKAMPVIQI-CPHSGQYDFHSKYTKGATDYLVPAPISEELKSEMQLMAEK 244

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            +    C G+ R D      +   + LE N  PGMT  S+ P+ AA  G SF +L   ++
Sbjct: 245 GYHVAECEGVVRFDMR-TDHNGVPYVLEANSIPGMTETSLVPKSAANIGISFAKLCEMIL 303

Query: 294 EDASCLR 300
           E A   +
Sbjct: 304 EGAGLNK 310


>gi|227510155|ref|ZP_03940204.1| D-alanine--D-alanine ligase [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
 gi|227513084|ref|ZP_03943133.1| D-alanine--D-alanine ligase [Lactobacillus buchneri ATCC 11577]
 gi|227083659|gb|EEI18971.1| D-alanine--D-alanine ligase [Lactobacillus buchneri ATCC 11577]
 gi|227190360|gb|EEI70427.1| D-alanine--D-alanine ligase [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
          Length = 375

 Score =  287 bits (736), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 95/346 (27%), Positives = 164/346 (47%), Gaps = 52/346 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI------------------------ 36
           + ++ GG SSE +VS  S      A++   + VS                          
Sbjct: 9   VGLIFGGNSSEHDVSKRSAHNIYDAMDKDKYDVSLFLMTKNGYFLGTKASTRVFNGEPED 68

Query: 37  DVDRSVGLVLAHLKP-------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
           DV R     L    P             D+ F ++HGN GEDG +Q +L LL  PY  SG
Sbjct: 69  DVARQEIAKLDKSNPLAPILNLSEDSNIDVFFPIIHGNLGEDGTIQGLLRLLNKPYVGSG 128

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVIKPLKGGS 137
           +L SA+S DK  +K+++   GV      L+   T++          +     +KP   GS
Sbjct: 129 VLGSAMSFDKDITKKILKLAGVATTRYELLTPLTVEKYSYDSLSAELGKILFVKPANQGS 188

Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDA---SLDVTEIA 193
           S+GI  ++       D     ++ + +++L+E+ ++G  EL   V+G+    +  V  I 
Sbjct: 189 SVGIHKVETSDDY--DEAIRDAFRYDNKVLVEEAIEGPEELEISVLGNHHPIASKVGSIK 246

Query: 194 VPKSD-FYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
           VP  D FY+Y+ K+   +      P  IP  + KE+ ++A  +++A+G +G++R DFL  
Sbjct: 247 VPADDAFYTYDNKFVDASQVKFDVPVDIPEALSKELTKMALDSYRALGLKGMARIDFLVS 306

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
               + +  E+N  PG T +S++P++ A +G S+REL+  +++ A+
Sbjct: 307 -QDSEPYVSEVNTLPGFTNISLYPQLFAASGISYRELIDRLIQLAN 351


>gi|240168958|ref|ZP_04747617.1| D-alanyl-alanine synthetase A [Mycobacterium kansasii ATCC 12478]
          Length = 370

 Score =  287 bits (736), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 103/360 (28%), Positives = 160/360 (44%), Gaps = 65/360 (18%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD-------- 52
           +AV+ GG S+E  +S  S  +    L+   F+V  I +      VL    PD        
Sbjct: 10  VAVVFGGRSNEHAISCVSAGSILRNLDPQRFEVIAIGITPQGSWVLTDGNPDALAITNRQ 69

Query: 53  ---------------------------------------LAFNVLHGNFGEDGLVQAILE 73
                                                  + F VLHG +GEDG +Q +LE
Sbjct: 70  LPAVSSESGTLLALPADPQWGGRLVSLPPGAGEVLASVDVVFPVLHGPYGEDGTIQGLLE 129

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF----TMDSQHLISPPYV 129
           L  +PY  +G+LASA  MDK  +K+++++ G+PV P  ++       ++D    +  P  
Sbjct: 130 LAGVPYVGAGVLASAAGMDKEFTKKLLTADGLPVGPHAVLRPSRPALSLDECERLGLPAY 189

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           +KP +GGSS+G+  +     +P  +  + +  H  ++++E  V+G EL CGV+      V
Sbjct: 190 VKPARGGSSIGVSRVSSWDELPAAV--AEARRHDPKVIVEAAVNGRELECGVLEFPDGTV 247

Query: 190 -----TEIAVP-----KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
                 EI V      +  FY +  KY    +   +PAK+  D+   V+ LA  A  AI 
Sbjct: 248 QASTLGEIRVAGVRGREDAFYDFATKYLDDAAELDVPAKVDDDVADAVRDLAIRAFHAID 307

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
           C+G++R DF            EIN  PG T +S++P M A +G  +  LL  MVE A   
Sbjct: 308 CQGLARVDFFLTEEG--PVINEINTMPGFTTISMYPRMWAASGVDYPTLLATMVETALAR 365


>gi|224541777|ref|ZP_03682316.1| hypothetical protein CATMIT_00949 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525304|gb|EEF94409.1| hypothetical protein CATMIT_00949 [Catenibacterium mitsuokai DSM
           15897]
          Length = 342

 Score =  287 bits (735), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 81/337 (24%), Positives = 156/337 (46%), Gaps = 45/337 (13%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------------SVGLVLAHL 49
           ++ GG S+E  VS  S        + + + +    + +             S   +    
Sbjct: 5   LVCGGQSTEHAVSRMSCVNIYKNADKSKYDIKIAGITKEGEWYDLVSTDFSSDSWLEGAT 64

Query: 50  K----------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
           K           D+ F VLHG FGEDG +Q +LE+ ++PY    ++AS  +MDK+ +K++
Sbjct: 65  KITDHFTFLKSFDVVFPVLHGQFGEDGTIQGLLEMAQVPYVGCRVMASCTAMDKIYAKKL 124

Query: 100 VSSCGVPVCPSILVNRF------------------TMDSQHLISPPYVIKPLKGGSSLGI 141
                +P  PS+ V +                    M+    +  P  +K  + GSS+G 
Sbjct: 125 FDQAHIPQVPSLYVKKRYDDKLVVVDDEGRESFNVEMEIYTHLGFPCFVKASRSGSSVGC 184

Query: 142 IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA--VPKSDF 199
             +     +   L ++++++    +++E+ ++  EL C V+G+  +  + +   +P  +F
Sbjct: 185 YKVNSLTELLPRLHEAATYDRH--VVVEKAINATELECAVIGNDDISASRVGQILPHGEF 242

Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
           Y+YE KY    S   +PA++   I   +++ A  A +A+   G++R DF +D  +  V+ 
Sbjct: 243 YTYESKYEDEQSATCIPARVDQSIQDYIRQAAVKAFKAVDGTGLARCDFFYDNDTGNVYL 302

Query: 260 LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            EIN  PG T +S++P++   AG     L+  +++ A
Sbjct: 303 NEINTMPGFTNISMYPQLMKDAGLDTPALIDELIKLA 339


>gi|23328865|gb|AAC43218.2| D-alanine:D-alanine ligase-related protein [Enterococcus faecalis]
          Length = 348

 Score =  287 bits (735), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 80/344 (23%), Positives = 151/344 (43%), Gaps = 51/344 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---LAHLKPD----- 52
           + +L GG S E +VS+ S  +  +A+    ++V  + + +    V   L   +P      
Sbjct: 3   IILLYGGRSEEHDVSVLSAYSVLNAIYYKYYQVQLVFISKDGQWVKGPLLSERPQNKEVL 62

Query: 53  -----------------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                        + F VLHG  GEDG +Q  +E + +PY  +G
Sbjct: 63  HLTWAQTPEETGEFSGKRISPSEIYEEEAIVFPVLHGPNGEDGTIQGFMETINMPYVGAG 122

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPLK 134
           +LAS  +MDK+ +K ++ + G+P  P + V R              +  +  P  +KP  
Sbjct: 123 VLASVNAMDKIMTKYLLQTVGIPQVPFVPVLRSDWKGNPKEVFEKCEGSLIYPVFVKPAN 182

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI-- 192
            GSS+GI  ++  + +        ++ +  + ++EQ ++  E+   ++G+  +  T    
Sbjct: 183 MGSSVGISKVENREELQE--ALEEAFRYDARAIVEQGIEAREIEVAILGNEDVRTTLPGE 240

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            V    FY Y+ KY +      +PA +P ++  + Q  A  A+  +   G+SR DF    
Sbjct: 241 VVKDVAFYDYDAKYINNTIEMQIPAHVPEEVAHQAQEYAKKAYIMLDGSGLSRCDFFLTS 300

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              ++F  E+N  PG T  S++P +    G  + +L+  +++ A
Sbjct: 301 K-NELFLNELNTMPGFTDFSMYPLLWENMGLKYSDLIEELIQLA 343


>gi|312886956|ref|ZP_07746560.1| D-alanine/D-alanine ligase [Mucilaginibacter paludis DSM 18603]
 gi|311300268|gb|EFQ77333.1| D-alanine/D-alanine ligase [Mucilaginibacter paludis DSM 18603]
          Length = 328

 Score =  287 bits (735), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 89/325 (27%), Positives = 156/325 (48%), Gaps = 32/325 (9%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI-----------------DVDRS-- 41
           +A+L GG S E EVS+ S +  A+ L    +KV  I                 D+D++  
Sbjct: 4   IALLAGGFSGEYEVSVKSAQYIAANLPAEKYKVYTILITADGWFYESEGGEHIDIDKNDF 63

Query: 42  -VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
            + L    +K D AF  +HG  GEDG +Q   ++L IPY       SA++M+K  +K +V
Sbjct: 64  SLSLNGDRIKFDFAFITVHGTPGEDGKLQGYFDMLCIPYNTCDATTSAITMNKAYTKAIV 123

Query: 101 SS-CGVPVCPSILVNRFT----MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
           +   G+    S+ + +            +  P  IKP  GGSS+G+  +    ++P  L 
Sbjct: 124 NGIEGLHTAKSMQLFQHDGHDIASIAARLKFPLFIKPNNGGSSVGMSKVHNVAALPQAL- 182

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNS 211
              +++   Q+L+E+++ G E + G++        L  TEI +   +F+ YE KY+   +
Sbjct: 183 -EKAFHEDHQILVEEFIKGREFSIGIVRLHGELKVLPATEI-ISSKEFFDYEAKYTDGVT 240

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271
             + PA +  +  K + R+    +  + C G++R DF+    S+  +++EIN  PG T  
Sbjct: 241 QEITPAHLSQEQVKTIARIVSEVYLRLNCHGMTRLDFILQEESQDFYFIEINTTPGQTVN 300

Query: 272 SIFPEMAAYAGYSFRELLLWMVEDA 296
           S+ P+    AG   ++    ++E A
Sbjct: 301 SLIPQQVRAAGMDIKDFYSALIEGA 325


>gi|169334858|ref|ZP_02862051.1| hypothetical protein ANASTE_01264 [Anaerofustis stercorihominis DSM
           17244]
 gi|169257596|gb|EDS71562.1| hypothetical protein ANASTE_01264 [Anaerofustis stercorihominis DSM
           17244]
          Length = 351

 Score =  287 bits (735), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 94/342 (27%), Positives = 157/342 (45%), Gaps = 49/342 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           + VL GG S E +VSL S  +  +++    + +  I V RS    L              
Sbjct: 12  ILVLFGGNSPEYDVSLKSAYSVINSINKDLYDIKLIGVSRSGDFYLYEGDIEKIRNDTWH 71

Query: 49  -----------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPY 79
                                        +  D AF +LHG  GEDG +Q +LEL  IP 
Sbjct: 72  LDKNCYDALISGNTSEHGIVVFKNDELIIIHIDAAFPILHGKNGEDGTIQGLLELGGIPI 131

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ---HLISPPYVIKPLKGG 136
              G+L+SAL MDK R+ ++V S G+ V  S+L+N+   D       +  P  +KPLK G
Sbjct: 132 IGCGVLSSALCMDKYRAHKLVESMGIKVPKSVLINKSINDFSNHIEYLGFPIFVKPLKAG 191

Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK 196
           SS GI  ++  + +   + +  ++ + D++++E+ +DG E+ C V+G+    + E+   +
Sbjct: 192 SSFGITKVEDKKDLFKAVDK--AFEYDDKVVLEENIDGFEVGCAVLGNEKPIIGEVDEIE 249

Query: 197 --SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
               F+ Y  KY+   S   +PA+I  +  K ++  A   ++ + C+  +R D       
Sbjct: 250 LSKGFFDYVEKYNLKTSKIHMPARITEENAKVIKETALKIYKILDCKDFARIDMFITK-D 308

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           R + + E+N  PG T  S FP M    G  F E++  ++  A
Sbjct: 309 RDIVFNEVNTIPGFTAHSRFPNMLKGIGMDFDEIVNKIISLA 350


>gi|741411|prf||2007289B D-Ala D-Ala ligase
          Length = 348

 Score =  287 bits (735), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 80/344 (23%), Positives = 151/344 (43%), Gaps = 51/344 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---LAHLKPD----- 52
           + +L GG S E +VS+ S  +  +A+    ++V  + + +    V   L   +P      
Sbjct: 3   IILLYGGRSEEHDVSVLSAYSVLNAIYYKYYQVQLVFISKDGQWVKGPLLSERPQNKEVL 62

Query: 53  -----------------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                        + F VLHG  GEDG +Q  +E + +PY  +G
Sbjct: 63  HLTWAQTPEETGEFSGKRISPSEIYEEEAIVFPVLHGPNGEDGTIQGFMETINMPYVGAG 122

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPLK 134
           +LAS  +MDK+ +K ++ + G+P  P + V R              +  +  P  +KP  
Sbjct: 123 VLASVNAMDKIMTKYLLQTVGIPQVPFVPVLRSDWKGNPKEVFEKCEGSLIYPVFVKPAN 182

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI-- 192
            GSS+GI  ++  + +        ++ +  + ++EQ ++  E+   ++G+  +  T    
Sbjct: 183 MGSSVGISKVENREELQE--ALEEAFRYDARAIVEQGIEAREIEVAILGNEDVRTTLPGE 240

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            V    FY Y+ KY +      +PA +P ++  + Q  A  A+  +   G+SR DF    
Sbjct: 241 VVKDVAFYDYDAKYINNTIEMQIPAHVPEEVAHQAQEYAKKAYIMLDGSGLSRCDFFLTS 300

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              ++F  E+N  PG T  S++P +    G  + +L+  +++ A
Sbjct: 301 K-NELFLNELNTMPGFTDFSMYPLLWENMGLKYSDLIEELIQLA 343


>gi|45657718|ref|YP_001804.1| D-alanyl-alanine synthetase A [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|59797586|sp|Q72R93|DDL_LEPIC RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|45600958|gb|AAS70441.1| d-alanine-d-alanine ligase [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
          Length = 351

 Score =  287 bits (735), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 105/345 (30%), Positives = 162/345 (46%), Gaps = 56/345 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           +AV  GG S+E  +S+ +G      L   G  V  I + +  G V+              
Sbjct: 4   IAVFFGGSSTEHSISILTGCFICKTLHTMGHSVKPILLTKDGGWVVPSEYRMSIPFEVSN 63

Query: 49  -----------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
                                  L  D+AF  LHG  GEDG +Q  LE+L IPYT SG+L
Sbjct: 64  SPDLFQEEFQKRYGVSRTNQIFSLDADIAFLGLHGGQGEDGTIQGFLEILGIPYTGSGVL 123

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--------MDSQHLISPPYVIKPLKGGS 137
           ASA++MDK R+ Q+    G  V P   +++          +     +  P  +KP++GGS
Sbjct: 124 ASAIAMDKTRANQIFLQSGQKVAPFFEIDKLEYLNSTDAVITKLETLGFPQFLKPVEGGS 183

Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM--------GDASLDV 189
           S+ +  I   + +   L     +    +++ + ++ GIE++CGV+           +L  
Sbjct: 184 SVSVYKITNREQLKEKLAL--IFESDSKVMSQSFLTGIEVSCGVLERYRDGKFKKIALPA 241

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
           TEI VP  +F+ +E KY    S  + PA+I     K VQ LA  AH+++GC G SR+DF+
Sbjct: 242 TEI-VPGGEFFDFESKYKQGGSHEITPARISEQEMKRVQELAIAAHRSLGCSGYSRTDFI 300

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
              ++ +   LE N  PGMT  S+ P+ A  AG S  E+   ++E
Sbjct: 301 I--VNGEPHILETNTLPGMTETSLIPQQAKAAGISMEEVFSDLIE 343


>gi|256394928|ref|YP_003116492.1| D-alanine--D-lactate ligase [Catenulispora acidiphila DSM 44928]
 gi|256361154|gb|ACU74651.1| D-alanine/D-alanine ligase [Catenulispora acidiphila DSM 44928]
          Length = 346

 Score =  287 bits (735), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 86/335 (25%), Positives = 144/335 (42%), Gaps = 45/335 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           + ++ GG S E  +S+ S +  A  L+ + ++   I + R     L              
Sbjct: 6   IGIMFGGCSEEHPISVKSAREVAKNLDTSKYEPFYIGITRDGAWRLCDGPEENWENGASR 65

Query: 47  ---------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
                                  ++ DL   VLHG  GEDG +Q +LEL  IPY    + 
Sbjct: 66  PAVVSPDRGAHGLLVLDQGRYEAIRLDLVLPVLHGKLGEDGAIQGLLELAGIPYVGCDVQ 125

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145
            S L +DK  +  V+ + G+       +        + +  P  +KP + GSS G+  + 
Sbjct: 126 TSVLCIDKTLTYLVIQNEGIATPRFWTLTPDEKIDPNELPYPVFVKPARSGSSFGVSKVS 185

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS----LDVTEIAVPKSDFYS 201
               +   +    +  +  ++LIE+ V G E+ C V+G        +V  +A+    F  
Sbjct: 186 GKDELSGAI--EEARLYDAKVLIEEAVVGSEIGCAVLGTGEDLLVGEVDRVALTHGFFKI 243

Query: 202 YE---LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
           ++    +  S N+T ++PA IP      +Q  A L ++A+GCRG+SR DF        V 
Sbjct: 244 HQESAPETGSENATFIVPADIPAQSRALIQETAKLVYRALGCRGLSRVDFFL-KEDGTVV 302

Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
             E+N  PG+T  S +P M A AG+   E++  +V
Sbjct: 303 LNEVNTLPGLTSYSRYPRMMAAAGFPMSEVIDRLV 337


>gi|326202145|ref|ZP_08192015.1| D-alanine/D-alanine ligase [Clostridium papyrosolvens DSM 2782]
 gi|325987940|gb|EGD48766.1| D-alanine/D-alanine ligase [Clostridium papyrosolvens DSM 2782]
          Length = 349

 Score =  287 bits (734), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 86/344 (25%), Positives = 153/344 (44%), Gaps = 51/344 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44
           +A++ GG S E EVSL+S  +    + +  +    I + +                    
Sbjct: 6   IAIIFGGCSPEYEVSLNSASSVIKHINNDLYNTILIGITKEGEWLRYFGDVDKISNNTWY 65

Query: 45  VLAHLKP-------------------------DLAFNVLHGNFGEDGLVQAILELLEIPY 79
                 P                         D AF VLHG  GEDG VQ +L+L  IP+
Sbjct: 66  QEKGCNPVAFSQSPSIHGFYEFSEESSSITYVDAAFPVLHGRNGEDGTVQGMLKLAGIPF 125

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSI-----LVNRFTMDSQHLISPPYVIKPLK 134
              G+L+SA+ MDK  + ++  S GV V  SI     ++ +  ++    +  P  +KP +
Sbjct: 126 VGCGVLSSAMCMDKDIAHRIAQSSGVCVPKSISADKAMLLKDILNKAETLRYPVFVKPAR 185

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194
            GSS GI  +     +   ++   ++ +  +++IE+ +DG E+ C ++G+ +L + E+  
Sbjct: 186 AGSSFGISRVIDRAELEKAIIN--AFEYDSKIVIEENIDGFEVGCAILGNDNLVIGEVDE 243

Query: 195 PK--SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            +  S  + Y  KY+   S   +PA+I     + ++  A + + A+ C G +R D    P
Sbjct: 244 IELQSGIFDYNEKYTLKTSKIHMPARIDTVTAERIKDTARILYNALCCTGFARVDMFLTP 303

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              ++ + E+N  PG T  S +P M    G SF  ++  ++  A
Sbjct: 304 K-GEIVFNEVNTIPGFTAHSRYPNMLRGVGLSFASIVERLIRMA 346


>gi|145295462|ref|YP_001138283.1| D-alanyl-alanine synthetase A [Corynebacterium glutamicum R]
 gi|166198482|sp|A4QDT4|DDL_CORGB RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|140845382|dbj|BAF54381.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 360

 Score =  287 bits (734), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 93/349 (26%), Positives = 155/349 (44%), Gaps = 57/349 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +AV+ GG SSE  VS  S  A  + L+   + V  + +      V+    P         
Sbjct: 11  VAVVYGGRSSEHSVSCVSAGAIMAHLDPEKYDVIPVGITVDGAWVVGETDPQKLTLIDRT 70

Query: 52  ---------------------------------DLAFNVLHGNFGEDGLVQAILELLEIP 78
                                            D+ F VLHG FGEDG VQ +  L +IP
Sbjct: 71  MPEVEHREEVRPSLDPAHRGEFHFSDGSLYATADVIFPVLHGRFGEDGTVQGLFALSDIP 130

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN---RFTMDSQHLISPPYVIKPLKG 135
               G+LASA  MDK  +K+++++ G+P+   +++      T   ++L+  P  +KP +G
Sbjct: 131 VVGPGVLASAAGMDKEYTKKLMAAEGLPIGREVILRDRTELTEAEKNLLGLPVFVKPARG 190

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195
           GSS+GI  +   +     +  + +  H +++++E  + G E+ CGV+      +      
Sbjct: 191 GSSIGISRVTAWEDFNKAVGLARA--HDEKVIVESEIVGSEVECGVLQYPDGRIVASVPA 248

Query: 196 --------KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
                      FY ++ KY     T  +PA +     + +Q LA  + QA+ C G++R D
Sbjct: 249 LLSGTESGAGGFYDFDTKYLDNVVTAEIPAPLDEKTTELIQSLAVESFQALACEGLARVD 308

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           F            EIN  PG TP+S++P+M   +G ++ ELL  +V+ A
Sbjct: 309 FFVTA--NGPVLNEINTMPGFTPISMYPQMFTASGVAYEELLDVLVQQA 355


>gi|329766888|ref|ZP_08258416.1| hypothetical protein HMPREF0428_00113 [Gemella haemolysans M341]
 gi|328837613|gb|EGF87238.1| hypothetical protein HMPREF0428_00113 [Gemella haemolysans M341]
          Length = 355

 Score =  287 bits (734), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 88/339 (25%), Positives = 157/339 (46%), Gaps = 46/339 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI------------------------ 36
           + ++ GG S+E  +SL + K+  +A++   + V  I                        
Sbjct: 6   IGIIYGGKSAEHSISLLTAKSIINAIDKEKYNVFPIFISLEGNWARGEQITSEIADQHDL 65

Query: 37  -----DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSM 91
                D D S  L     K D+ F VLHG  GEDG +Q +LE+++I Y  + +L+SA  M
Sbjct: 66  IFSNFDNDISGLLFEDGRKFDIVFPVLHGPNGEDGTIQGLLEIMDIAYVGNNVLSSAAGM 125

Query: 92  DKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPLKGGSSLGII 142
           DK+  KQ+ ++  +P  P +    +T          +    +  P  +KP   GSS+GI 
Sbjct: 126 DKVVMKQLFAAYDLPQLPYVHFIEYTWKNKKDAIIAEINEKLKYPVFVKPANLGSSVGIS 185

Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIA----VPKS 197
               +  +   + ++  +    ++++EQ   G  E+   V+G   +  T+      +  +
Sbjct: 186 RCNDEAELVKGIEEALKF--DKKIVVEQGAVGAKEIEVAVLGYNEVKTTDPGEIVNISST 243

Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
           +FY YE KY+   S   +PA +   +Y + + +A  A +AI   G+ R+DF +     ++
Sbjct: 244 EFYDYETKYTDGQSRMDIPAPVDTTLYPKFREMAATAFRAISGSGLVRADFFYTK-EGEI 302

Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           F  E+N  PG TP S+FP + A    S+ E++  + + A
Sbjct: 303 FINEVNTMPGFTPFSMFPSLWANMNVSYSEIIEELFKLA 341


>gi|306840264|ref|ZP_07473038.1| D-alanine--D-alanine ligase [Brucella sp. BO2]
 gi|306289791|gb|EFM60973.1| D-alanine--D-alanine ligase [Brucella sp. BO2]
          Length = 366

 Score =  287 bits (734), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 94/347 (27%), Positives = 166/347 (47%), Gaps = 51/347 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           + VL GG S+E +VS+ S     +AL+ A ++   + V R+   +L+             
Sbjct: 21  IVVLFGGRSAEHDVSVLSATNVMNALDPAKYEAVPVFVTRAGQWLLSRFVNGALEKPSSG 80

Query: 50  --------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                     K D+ F VLHG  GEDG VQ + ++  +P    G
Sbjct: 81  AELCLVPGGCGRAIVVPDAGAPYEANKIDIIFPVLHGLHGEDGAVQGLAQVARVPLAGCG 140

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSL 139
           IL SA ++DK  +K++ +  G+    S+ + R  + +    +  +  P  IKP + GSS+
Sbjct: 141 ILGSANALDKDIAKRLFNEAGLSTAKSVTITREEVPAFSALEQALGLPIFIKPARQGSSV 200

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD--ASLDVT---EIAV 194
           G+  +  +      +  S  + + D+LL E+++   E+ CGV+ D   +L V+   EI  
Sbjct: 201 GVHKVVTEADYQAAM--SDGFTYDDKLLAEEFIQAREVECGVLEDEGGALFVSRAGEIVP 258

Query: 195 PKSD-FYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            +S  FYSY+ KY   + T +  PA++P  +  E++ +A  A + +GC  ++R DF    
Sbjct: 259 AESHCFYSYDAKYIDADGTEIKVPAELPEQVENEIRAIAAKAFRVLGCDSMARVDFFVTA 318

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
             R++   EIN  PG T +S++ ++ A +G S+ E++  +V      
Sbjct: 319 -DRRIVLNEINTIPGFTDMSMYSKVMAVSGVSYPEIINRLVAHGLAR 364


>gi|258645244|ref|ZP_05732713.1| D-alanine--D-alanine ligase [Dialister invisus DSM 15470]
 gi|260402594|gb|EEW96141.1| D-alanine--D-alanine ligase [Dialister invisus DSM 15470]
          Length = 311

 Score =  287 bits (734), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 102/303 (33%), Positives = 163/303 (53%), Gaps = 11/303 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS-VGLVLAHLKPDLAFNVLH 59
           +AVLMGG+S E ++S  +G A   AL   G+   +++ + S V   L  +  ++ F  LH
Sbjct: 8   VAVLMGGVSREADISRKTGTAILQALLSLGYHAVKVEYNPSCVLKQLKAVGAEVVFIALH 67

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC---PSILVNRF 116
           G +GEDG +Q+ILEL +IPYT SG+ +SA++MDK+ S +V    GV +    P  L N  
Sbjct: 68  GKYGEDGTIQSILELSKIPYTGSGVSSSAITMDKIISSRVFKDAGVRMAFSKPYYLKNGI 127

Query: 117 TMDSQHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
              ++ +      P V+KP   GS++G+ ++ + + +   L +  +     ++L E Y+D
Sbjct: 128 DTVAESIEKNFKFPVVLKPACEGSTIGLEIVYEKEKLKEALKRVFA--IESRILAEAYLD 185

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           G E T  V+   +L + +I  P S  Y +  KY+S  + +++PA +P     E+ R+A L
Sbjct: 186 GKEFTIAVLNGKALPIIQI-CPHSGQYDFHSKYTSGATDYIVPAPLPGAAADEMTRMAIL 244

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            ++A  C G+ R DF  D      F LE N  PGMT  S+ P+ AA  G  F  L   ++
Sbjct: 245 GYEAAECSGVVRFDFRTDKR-GTPFLLEANSIPGMTETSLVPKAAAAIGMDFPSLCENIL 303

Query: 294 EDA 296
             A
Sbjct: 304 LKA 306


>gi|300362570|ref|ZP_07058746.1| D-alanine--D-alanine ligase [Lactobacillus gasseri JV-V03]
 gi|300353561|gb|EFJ69433.1| D-alanine--D-alanine ligase [Lactobacillus gasseri JV-V03]
          Length = 375

 Score =  287 bits (734), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 92/342 (26%), Positives = 162/342 (47%), Gaps = 48/342 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------DRSVGLVLAHLK-- 50
           + ++ GG SSE EVS+ S       ++   F V  + +        D     VL + K  
Sbjct: 21  VGLIFGGNSSEYEVSIMSAHNIYEEIDTNKFDVYPMWITNDGYLADDADSRRVLDNPKME 80

Query: 51  ---------------------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
                                 D+ F ++HGN GEDG +Q +  +L+ P+    +LA+A+
Sbjct: 81  VANPHKVANISNIVELKDRPEIDVFFPIVHGNLGEDGCLQGLFRVLDKPFVGDDVLAAAV 140

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH-----------LISPPYVIKPLKGGSS 138
           +MDK  +K +    GVPV   I V RF  +               +     +KP   GSS
Sbjct: 141 TMDKEMTKILAQRAGVPVAKWIAVKRFEYNDPDNEKLDYEYVASQLGSDLFVKPSNQGSS 200

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL---DVTEIAVP 195
           +G+  +  ++   + L  + ++ + D++L+E+ V G E+   V+G+       V +I   
Sbjct: 201 VGVSHVTNEKEYKVAL--AEAFKYDDKVLVEETVHGTEVETAVLGNDKPIVAGVGQIINA 258

Query: 196 KSDFYSYELKYSSLN-STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
           K  FY+YE KY   + ST  +PAK+P  I ++V++ A    QA  C G++R D +    +
Sbjct: 259 KDSFYTYENKYDDDSTSTLEIPAKLPEGIVEKVRKNALKVFQATECSGLARIDSMLRTEA 318

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           ++V   E+N  PG T +S++P++    G  + +L+  +++ A
Sbjct: 319 KEVVLTEVNALPGFTNISMYPKLFEEVGIPYTDLITKLIDYA 360


>gi|126696830|ref|YP_001091716.1| D-alanyl-alanine synthetase A [Prochlorococcus marinus str. MIT
           9301]
 gi|166198497|sp|A3PEE0|DDL_PROM0 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|126543873|gb|ABO18115.1| D-alanine--D-alanine ligase [Prochlorococcus marinus str. MIT 9301]
          Length = 355

 Score =  287 bits (734), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 91/345 (26%), Positives = 157/345 (45%), Gaps = 54/345 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASA----LEDAGFKVSQIDVDR---------------- 40
           + ++ GG S+E EVS+SS K    A    +    F V    +++                
Sbjct: 9   IGLIFGGHSNEHEVSISSAKTVFKAFKAQINRERFTVKAFYINKYGDWLDSDISEKILTG 68

Query: 41  ------------------SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
                             +    +     D+ F +LHG  GEDG +  ++   + P    
Sbjct: 69  EIENYKTKKQEIFNQEKINFLDGIEFQNIDVWFPLLHGFNGEDGSIHGLIRFTKKPLVGC 128

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL-----------ISPPYVIK 131
           GI+ SAL MDK+  K + S+  +P    ++     ++ + +           +  P  +K
Sbjct: 129 GIIGSALGMDKILMKTIFSNHKLPQVNYLVFQNEDLNDKQVKNKIINEILKKLKFPVFVK 188

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSSLGI  +K +  I L L    +W    ++LIE+ ++  E+ CG++G++ L  +E
Sbjct: 189 PSNSGSSLGISKVKNESEILLAL--EKAWGIDPRILIEEGLEVREIECGIIGNSKLITSE 246

Query: 192 IAVP--KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
           I     +SD+Y Y+ KY S N   ++PA+I   I  E++ +A  + +A+   G +R DF 
Sbjct: 247 IGEVNYESDWYDYDSKYHSNN-KIIIPAEIDSKITNEIKEIAIKSCRALNIFGFARVDFF 305

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            +  S K+   EIN  PG T  S+FP +   +G    +L+  +V+
Sbjct: 306 LEKSSNKILLNEINTIPGFTKNSMFPMLWEASGLKIEQLVAKLVD 350


>gi|94990738|ref|YP_598838.1| D-alanyl-alanine synthetase A [Streptococcus pyogenes MGAS10270]
 gi|166198508|sp|Q1JG50|DDL_STRPD RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|94544246|gb|ABF34294.1| D-alanine--D-alanine ligase [Streptococcus pyogenes MGAS10270]
          Length = 348

 Score =  287 bits (734), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 87/334 (26%), Positives = 158/334 (47%), Gaps = 41/334 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKV--------------------------- 33
           + +L GG S+EREVS+ S ++   A+    F V                           
Sbjct: 6   LVLLYGGRSAEREVSVLSAESVMRAVNYDKFLVKTYFITQMGQFIKTQQFSEKPSESERL 65

Query: 34  ---SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
                I++ + +     + +  + F VLHG  GEDG +Q  LE+L +PY  + +++S+++
Sbjct: 66  MTNETIELTQKIKPSDIYEEGAVVFPVLHGPMGEDGSIQGFLEVLRMPYIGTNVMSSSIA 125

Query: 91  MDKMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
           MDK+ +K+V+ S G+P     +      +    +++   ++ P  +KP   GSS+GI   
Sbjct: 126 MDKITTKRVLESIGIPQVAYTVYIDGQDLEACLVETLARLTFPIFVKPANMGSSVGISKA 185

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202
           +    +   +  +    +  ++LIEQ V   E+  G++G+  +  T     +   DFY Y
Sbjct: 186 QTKVELRKAIQLAL--TYDSRVLIEQGVVAREIEVGLLGNDKVKSTLPGEVIKDVDFYDY 243

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
           + KY     T  +PA +   I  E++  A +A +A+G  G+SR DF       +V+  E+
Sbjct: 244 QAKYVDNKITMAIPADVDQSIVTEMRSYAEVAFKALGGCGLSRCDFFLT-QDGQVYLNEL 302

Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           N  PG T  S++P +    G ++ +L+  +V  A
Sbjct: 303 NTMPGFTQWSMYPLLWENMGLAYPDLIEVLVTLA 336


>gi|291302804|ref|YP_003514082.1| D-alanine/D-alanine ligase [Stackebrandtia nassauensis DSM 44728]
 gi|290572024|gb|ADD44989.1| D-alanine/D-alanine ligase [Stackebrandtia nassauensis DSM 44728]
          Length = 346

 Score =  287 bits (734), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 88/335 (26%), Positives = 148/335 (44%), Gaps = 45/335 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           + ++ GG   E  VS+ S +  A  L+   ++V  I + ++   +L              
Sbjct: 6   VGIVFGGACEENPVSVKSAQEVARNLDTDKYEVLYIGITKTGDWLLCDSPDTGWETTKNR 65

Query: 47  ---------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
                                  ++ DL F VLHG  GEDG +Q +LEL  IPY    + 
Sbjct: 66  PAVLSPDRNVHGLLVLENGKYETIRLDLVFPVLHGKLGEDGAIQGLLELSGIPYVGCDVQ 125

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145
            SAL MDK  +  V    G+      +V          +  P V+KP + GSS G+  + 
Sbjct: 126 TSALCMDKSLTYLVAQHAGITTPQYWIVTANKDIEPDRLPYPVVVKPARSGSSFGVNKVT 185

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYS 201
            ++ +   +   ++  +  ++LIE+ + G E+ C ++G+     + +V +I V +  F  
Sbjct: 186 HEEELQTAI--DTARQYDSKVLIEEAIVGTEVGCSILGERYGLVAGEVDQINVSQGIFRI 243

Query: 202 YE---LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
           ++    +  S NST  +PA I L+    VQ  A   ++A+G +G++R DF        + 
Sbjct: 244 HQENNPESGSENSTITVPADISLESRSLVQETAKTLYRALGGKGLARIDFFL-KEDGTLV 302

Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
             E+   PGMT  S +P M A AG    +L+  MV
Sbjct: 303 LNEVQTLPGMTSYSRYPRMMAAAGIPMADLIDRMV 337


>gi|239628538|ref|ZP_04671569.1| D-alanine-D-alanine ligase [Clostridiales bacterium 1_7_47_FAA]
 gi|239518684|gb|EEQ58550.1| D-alanine-D-alanine ligase [Clostridiales bacterium 1_7_47FAA]
          Length = 353

 Score =  287 bits (734), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 91/343 (26%), Positives = 150/343 (43%), Gaps = 53/343 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS------------------- 41
           +AV+ GG SSE  VS  S       ++   + +  + +                      
Sbjct: 6   VAVIFGGQSSEHIVSCMSAVNVIEHIDSTRYNIVLVGITEEGHWIKTESLEDVKSGAWRD 65

Query: 42  -------------------VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
                               G  +  +K D+ F +LHG +GEDG +Q +LEL  IPY   
Sbjct: 66  GKVWAVLPPDATKKCILLMDGDNVEEVKVDIVFPILHGLYGEDGTIQGLLELARIPYVGC 125

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI--------SPPYVIKPLK 134
           G+LASA+SMDK+ +K +VS  G+       V R  +     +          P  IKP  
Sbjct: 126 GVLASAVSMDKLYTKIIVSDLGIRQAEYESVYREELGDMEQVASRIEKHFPYPVFIKPSN 185

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194
            GSS GI      Q +   LL+++   H  ++L+E+ + G E+ C V G  S  +    V
Sbjct: 186 AGSSRGISKAGNRQELEAGLLEAA--RHDRKILVEETIVGREVECAVFGGGSHGIEASGV 243

Query: 195 PK----SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
            +    ++FY ++ KY +  S  V    +P    ++V+R A    +A+   G++R DF  
Sbjct: 244 GEILAAAEFYDFDAKYFNEESRTVTDPVLPDGATQKVRRAAMDIFRAVDGYGLARVDFFV 303

Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
              + +V + EIN  PG T +S++P +    G    +L+  ++
Sbjct: 304 -KDNGEVVFNEINTMPGFTAISMYPMLWEARGIGKDQLVGMLL 345


>gi|283468514|emb|CAP18790.1| putative D-ala D-ala ligase [Prosthecobacter dejongeii]
          Length = 306

 Score =  287 bits (734), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 102/306 (33%), Positives = 155/306 (50%), Gaps = 15/306 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG  SEREVS  + ++  +AL+  G +V ++DV      V A     +A N++HG
Sbjct: 9   IAVLFGGPGSEREVSKKTAESVIAALKTKGAEVVEVDVTGPDFDVPADAL--IAMNLIHG 66

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTM 118
            FGEDG +QAILE   IPYT +G+ +S ++ DK +SK+   + GVP   S   L++    
Sbjct: 67  TFGEDGQLQAILEERGIPYTGAGVESSRIAFDKAQSKERFVAAGVPTPRSQNYLLDGSQ- 125

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                IS P V KP + GSS+G+ + + +      +    +   G   L+E++V+G ELT
Sbjct: 126 --PLDISIPLVSKPPREGSSVGVNICRTEAEWVSAI--EEAKKCGTSTLVEEFVEGKELT 181

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSS----LNSTHVLPAKIPLDIYKEVQRLAFLA 234
            G++GD  L +  I  P   FY    KY        + +  PA +     + VQ  A  A
Sbjct: 182 IGILGDQVLPIIHIE-PVDGFYDMSNKYPWLNGTGKTHYHCPADLDEATTRRVQEAAMAA 240

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            ++ G     R D +      + F LEIN  PGMT  S+ P+ A   G  F +L + ++E
Sbjct: 241 FKSCGTEVYGRVDVMLRN-DGEPFVLEINTIPGMTSSSLLPKAALAVGIEFPDLCVHIIE 299

Query: 295 DASCLR 300
            +   R
Sbjct: 300 LSLAAR 305


>gi|329895282|ref|ZP_08270924.1| D-alanine--D-alanine ligase [gamma proteobacterium IMCC3088]
 gi|328922404|gb|EGG29747.1| D-alanine--D-alanine ligase [gamma proteobacterium IMCC3088]
          Length = 310

 Score =  287 bits (734), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 97/301 (32%), Positives = 147/301 (48%), Gaps = 8/301 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG SSEREVSL SG      L     +V  +D   S   +      D  FN+LHG
Sbjct: 11  VAVLLGGTSSEREVSLMSGATVVDNLAPLCAQVRSVDPVNS-NWLEQLDGVDFVFNILHG 69

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GE+G VQ +L  L +P + SG+L +AL MDK+RSK +    G+PV  + ++     D 
Sbjct: 70  GSGENGSVQGLLATLGLPQSGSGVLGAALGMDKLRSKAIWRDAGLPVAEAAVL-ASDTDF 128

Query: 121 QHLIS--PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           + +I       +KP   GSS+G+ +    + +      +S   +   +  E+ + G E T
Sbjct: 129 EAVIQSLGEVFVKPAYEGSSIGMSIASSAEELAQAYKSAS--EYQGPVFAERRIVGEEYT 186

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             ++GD +L    +      FY Y  KY S ++ +  P  +  +   E+  LA  A +AI
Sbjct: 187 VAILGDRALPAIRLQ-AHEIFYDYHAKYVSNDTQYFCPCGLSKEREAELADLALAAFKAI 245

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
            C    R DF+ D    + + LE N  PGMT  S+ P  A  AG S + LL  ++E +  
Sbjct: 246 DCAVWGRVDFMVDQQ-GQPYILEANTVPGMTSHSLVPMAAKAAGLSVQGLLREIIELSLA 304

Query: 299 L 299
            
Sbjct: 305 R 305


>gi|239618027|ref|YP_002941349.1| D-alanine/D-alanine ligase [Kosmotoga olearia TBF 19.5.1]
 gi|239506858|gb|ACR80345.1| D-alanine/D-alanine ligase [Kosmotoga olearia TBF 19.5.1]
          Length = 305

 Score =  287 bits (734), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 95/300 (31%), Positives = 153/300 (51%), Gaps = 10/300 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK-PDLAFNVLH 59
           + VL GG+S ER +SL SG    +ALE  G+ V   D+       LA L+  DL F  LH
Sbjct: 8   ITVLYGGLSKERPISLKSGSNVINALEKLGYIVDAFDLRADNITELAKLRDTDLVFIALH 67

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G FGEDG +Q++LEL  I Y  S  L SA+  +K  + +++ S  + +     +     +
Sbjct: 68  GKFGEDGKIQSLLELFGIEYIGSDSLVSAICFNKNLTYKLL-SNTITMPRWKTIT-SEEE 125

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
            +     P VIKP   GSS+G+ +    + +      +        L++E+Y+ G ELT 
Sbjct: 126 LEGWKHFPAVIKPANEGSSIGVYICDTFEELQ--NKTTKVLKEYKTLILEEYIKGRELTI 183

Query: 180 GVMGDASLDVTEIAV---PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
            ++      V    +   PK  FY YE KY++  +  ++PA I   + +E+++L+     
Sbjct: 184 SIIEKGGQPVVLPILELKPKRRFYDYEAKYTAGLTEFIVPAPIDDKLKEEIKKLSKRIFT 243

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           A+GCR  +R D +      + ++LE+N  PG+T +S  P  A  AG  F EL+  +V++A
Sbjct: 244 ALGCRHFARIDGILKE--NQFYFLEVNTIPGLTDLSDLPVSARAAGMGFEELIDLIVKEA 301


>gi|161870650|ref|YP_001599823.1| D-alanine--D-alanine ligase [Neisseria meningitidis 053442]
 gi|161596203|gb|ABX73863.1| D-alanine--D-alanine ligase B [Neisseria meningitidis 053442]
          Length = 294

 Score =  287 bits (734), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 101/295 (34%), Positives = 152/295 (51%), Gaps = 7/295 (2%)

Query: 5   MGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGE 64
           MGG SSERE+SL SG A  +AL+  G      D   +    L       AFN+LHG +GE
Sbjct: 1   MGGFSSEREISLDSGTAILNALKSKGIDAYAFDPKETPLSELKAQGFQTAFNILHGTYGE 60

Query: 65  DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQH 122
           DG VQ  LELL IPYT SG+ ASA+ MDK R K +  + G+PV    +++  T     + 
Sbjct: 61  DGAVQGALELLGIPYTGSGVAASAIGMDKYRCKLIWQALGLPVPEFAVLHDDTDFDAVEE 120

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            +  P  +KP   GSS+G++ +K    +    +     +   +++ E+++ G E +C V+
Sbjct: 121 KLGLPMFVKPAAEGSSVGVVKVKGKGRLKS--VYEELKHLQGEIIAERFIGGGEYSCPVL 178

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCR 241
               L    I +P ++FY YE KY+  ++ +  P   +       ++ LA    QAIG  
Sbjct: 179 NGKGLPGIHI-IPATEFYDYEAKYNRDDTIYQCPSEDLTEAEESLMRELAVRGAQAIGAE 237

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              R DF       K++ LEIN  PGMT  S+ P+ AA  G  F +L + +++ A
Sbjct: 238 SCVRVDF-LKDTDGKLYLLEINTLPGMTSHSLVPKSAAVTGVGFADLCIEILKTA 291


>gi|149183239|ref|ZP_01861683.1| D-alanylalanine synthetase [Bacillus sp. SG-1]
 gi|148849035|gb|EDL63241.1| D-alanylalanine synthetase [Bacillus sp. SG-1]
          Length = 279

 Score =  287 bits (734), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 82/257 (31%), Positives = 143/257 (55%), Gaps = 14/257 (5%)

Query: 51  PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            D+   +LHG  GEDG VQ +LELL +PY  +G+LASA  MDK+  K + +  G+P    
Sbjct: 12  FDVILPLLHGPNGEDGTVQGMLELLNLPYVGNGVLASAAGMDKVIMKNLYAQAGIPQVNY 71

Query: 111 ILVNRFTMDS---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN 161
           +   + T ++         +  +  P  +KP   GSS+GI   +  + + L   ++  ++
Sbjct: 72  VWYLKKTWENDPEAAYLKVEKELGYPCFVKPANLGSSVGISKAESREELILAFKEAFQFD 131

Query: 162 HGDQLLIEQYVDGIELTCGVMGDASLD--VTEIAVPKSDFYSYELKYSSLNSTHVLPAKI 219
              +++IEQ V   E+  GV+G+   +  V    +PK DFY Y+ KY   ++  ++PA+I
Sbjct: 132 R--KIIIEQGVKAREIELGVLGNDEPECSVAGEILPKKDFYDYKAKYEDGDTALIIPAEI 189

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279
           P D+Y++++R+A  + +A+ C G+ R+DF        ++  E+N  PG TP S+FP +  
Sbjct: 190 PADVYEDMKRIAVDSFKALDCSGLVRADFFLTE-DGTIYMNEVNTMPGFTPFSMFPLLWK 248

Query: 280 YAGYSFRELLLWMVEDA 296
           ++G  + EL+  +V+ A
Sbjct: 249 HSGVEYPELIERLVKLA 265


>gi|154486582|ref|ZP_02027989.1| hypothetical protein BIFADO_00399 [Bifidobacterium adolescentis
           L2-32]
 gi|154084445|gb|EDN83490.1| hypothetical protein BIFADO_00399 [Bifidobacterium adolescentis
           L2-32]
          Length = 378

 Score =  286 bits (733), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 87/370 (23%), Positives = 154/370 (41%), Gaps = 77/370 (20%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           + V+ GG + E  +S  S  +   AL+   F+   + + +    ++    P         
Sbjct: 6   IVVMYGGKADEHSISCISAASALRALDTDKFEAIPVGITKDGKWIVNGENPLGWSLDEGL 65

Query: 52  --------------------------------------DLAFNVLHGNFGEDGLVQAILE 73
                                                 D  F VLHG +GEDG +Q + E
Sbjct: 66  PTVEKTPGAKDVVLEVALGQDGFFAREDDGTLTPFGHVDAVFPVLHGPYGEDGTIQGLFE 125

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD-------------- 119
           ++ +PY   G+LASA  MDK  +K ++++ G+PV P I ++  + D              
Sbjct: 126 MMGVPYVGCGVLASAACMDKHYTKVLLAAAGIPVAPGITLDARSFDKASEFKANADAIMA 185

Query: 120 --SQHLISPPYVIKPLKGGSSLGIIVIKKD-QSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
             S+  +  P  +KP + GSS G+  ++ +  +  L      + +H  ++L+EQ +D  E
Sbjct: 186 QVSEAGLQYPLFVKPSRAGSSFGVTKVEHEGDAAELAAAVYEASHHDWRILVEQGIDARE 245

Query: 177 LTCGVMGDASLDVTEIAVP-----------KSDFYSYELKYSSLNSTHVL-PAKIPLDIY 224
           + C V+   + +  + + P              FY ++ KY    ++HV  PA +P +  
Sbjct: 246 IECAVLCPKAGEAPQASWPGEIVLDKRAEGDDQFYDFDSKYMDAAASHVEVPANLPEETL 305

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
             V+  A  A  A+   G+SR D        KV   EIN  PG T +S++P+     G  
Sbjct: 306 NLVRETAKKAFVAVDGAGLSRVDTFVTK-DGKVMVNEINTMPGFTSISMYPKAWEATGVR 364

Query: 285 FRELLLWMVE 294
           + +L+  ++E
Sbjct: 365 YTDLITMLIE 374


>gi|319937485|ref|ZP_08011890.1| VanG2 [Coprobacillus sp. 29_1]
 gi|319807325|gb|EFW03934.1| VanG2 [Coprobacillus sp. 29_1]
          Length = 353

 Score =  286 bits (733), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 94/341 (27%), Positives = 155/341 (45%), Gaps = 50/341 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44
           +A+L GG SSE  VSL S  +    L+   + +  I + +                    
Sbjct: 5   IAILFGGHSSEYSVSLESAYSVLCHLDHDKYNIYMIGITKDGKWYHFDGDILDIQNDTWW 64

Query: 45  ----------------VLAHLK--------PDLAFNVLHGNFGEDGLVQAILELLEIPYT 80
                            L  +K         D  F +LHG  GEDG VQ ++ L  IP  
Sbjct: 65  QHPLHEVTISPDPTKHALIEMKTDHFILVHIDAIFPILHGKNGEDGTVQGLIALSGIPLI 124

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVN-----RFTMDSQHLISPPYVIKPLKG 135
              + +SAL MDK R+ Q+V+  G+ V  S ++      +   ++   +S P  +KP+K 
Sbjct: 125 GCSVASSALCMDKERAHQIVNHAGIRVPKSFVLTSMQDYQLQKNNFLKLSLPLFVKPVKA 184

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195
           GSS GI  +     I   +    ++ + +++LIE+ ++G E+ C VMG   L +  +   
Sbjct: 185 GSSYGITKVTHLDEIEKAI--EFAFTYDNEILIEENIEGFEVGCAVMGTDQLILGRVDEI 242

Query: 196 K--SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
           +    F+ +  KY+  +S   +PA+I   I K +Q  A + ++A+GC+  +R D    P 
Sbjct: 243 ELSQGFFDFTEKYTLKSSQIHMPARIDSQIEKRIQETAQMIYKALGCQVFARVDMFLTP- 301

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             ++ + E+N  PG T  S FP M    GYSF  +L  ++E
Sbjct: 302 ENEIVFNEVNTIPGFTSHSRFPSMLQGIGYSFENILDKLIE 342


>gi|78779786|ref|YP_397898.1| D-alanine--D-alanine ligase [Prochlorococcus marinus str. MIT 9312]
 gi|123553873|sp|Q319I3|DDL_PROM9 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|78713285|gb|ABB50462.1| D-alanine--D-alanine ligase [Prochlorococcus marinus str. MIT 9312]
          Length = 355

 Score =  286 bits (733), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 90/345 (26%), Positives = 160/345 (46%), Gaps = 54/345 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASA----LEDAGFKVSQIDVDR---------------- 40
           + ++ GG S+E +VS+SS K   +A    +    F V    +++                
Sbjct: 9   IGLIFGGYSNEHDVSISSAKTVFNAFNSEINKQRFNVKAFYINKYGDWIDNDISVKILIG 68

Query: 41  ------------------SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
                             +    +     D+ F +LHG  GEDG +  +L+    P    
Sbjct: 69  EIEHKKTKKQELFNQKKINFLDGIEFQNIDIWFPLLHGFNGEDGSIHGLLKFTNKPLVGC 128

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILV-----------NRFTMDSQHLISPPYVIK 131
           GIL SAL MDK+  K + S+  +P    +++           N+  ++    ++ P  +K
Sbjct: 129 GILGSALGMDKILMKTIFSNLKIPQVNYLVIQNEDLNNLEVKNKLIIEIIKKLNFPVFVK 188

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSSLGI  +    ++   L    +W    ++L+E+ ++  E+ CG++G++ L  +E
Sbjct: 189 PSNSGSSLGISKVINKSALLKAL--EKAWEIDARILVEEGLETREIECGIIGNSELLTSE 246

Query: 192 IAVPK--SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
           I   +  SD+Y Y+ KY+S N   + PAKI   I K+++ +A  + + +   G +R DF 
Sbjct: 247 IGEVEYGSDWYDYDSKYNSNNKITI-PAKIDSKITKQIKEIAIQSCRTLNIFGFARVDFF 305

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            +  S K+F  EIN  PG T  S+FP +   +G +  +L+  +V+
Sbjct: 306 LEKSSNKIFLNEINTIPGFTKKSMFPMLWEASGLNIEQLVAKLVD 350


>gi|227554956|ref|ZP_03985003.1| D-alanine--D-alanine ligase [Enterococcus faecalis HH22]
 gi|307286653|ref|ZP_07566739.1| D-ala D-ala ligase [Enterococcus faecalis TX0109]
 gi|227175899|gb|EEI56871.1| D-alanine--D-alanine ligase [Enterococcus faecalis HH22]
 gi|306502131|gb|EFM71415.1| D-ala D-ala ligase [Enterococcus faecalis TX0109]
 gi|315581762|gb|EFU93953.1| D-ala D-ala ligase [Enterococcus faecalis TX0309A]
          Length = 351

 Score =  286 bits (733), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 80/340 (23%), Positives = 149/340 (43%), Gaps = 51/340 (15%)

Query: 5   MGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---LAHLKPD--------- 52
            GG S E +VS+ S  +  +A+    ++V  + + +    V   L   +P          
Sbjct: 2   YGGRSEEHDVSVLSAYSVLNAIYYKYYQVQLVFISKDGQWVKGPLLSERPQNKEVLHLTW 61

Query: 53  -------------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87
                                    + F VLHG  GEDG +Q  +E + +PY  +G+LAS
Sbjct: 62  AQTPEETGEFSGKRISPSEIYEEEAIVFPVLHGPNGEDGTIQGFMETINMPYVGAGVLAS 121

Query: 88  ALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPLKGGSS 138
           A +MDK+ +K ++ + G+P  P + V R              +  +  P  +KP   GSS
Sbjct: 122 ANAMDKIMTKYLLQTVGIPQVPFVPVLRSDWKGNPKEVFEKCEGSLIYPVFVKPANMGSS 181

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPK 196
           +GI  ++  + +        ++ +  + ++EQ ++  E+   ++G+  +  T     V  
Sbjct: 182 VGISKVENREELQE--ALEEAFRYDARAIVEQGIEAREIEVAILGNEDVRTTLPGEVVKD 239

Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256
             FY Y+ KY +      +PA +P ++  + Q  A  A+  +   G+SR DF       +
Sbjct: 240 VAFYDYDAKYINNTIEMQIPAHVPEEVAHQAQEYAKKAYIMLDGSGLSRCDFFLTSK-NE 298

Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +F  E+N  PG T  S++P +    G  + +L+  +++ A
Sbjct: 299 LFLNELNTMPGFTDFSMYPLLWENMGLKYSDLIEELIQLA 338


>gi|153853961|ref|ZP_01995294.1| hypothetical protein DORLON_01285 [Dorea longicatena DSM 13814]
 gi|149753343|gb|EDM63274.1| hypothetical protein DORLON_01285 [Dorea longicatena DSM 13814]
          Length = 354

 Score =  286 bits (733), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 97/352 (27%), Positives = 160/352 (45%), Gaps = 53/352 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------------DRSVG-- 43
           + VL GG+S ER+VSL SG      L + G +   +DV               DR  G  
Sbjct: 3   IIVLAGGLSPERDVSLLSGAGICKTLREMGHQAFLLDVFFGLPCDSDKLEEVFDRPDGGL 62

Query: 44  -------------LVLAHLKPD------------------LAFNVLHGNFGEDGLVQAIL 72
                          L   +PD                  + F  LHG+ GE+G +QA  
Sbjct: 63  EISKGISTSVPDLDALRKSRPDQSPSEIGPNVIELCQMADITFMALHGSIGENGKLQATF 122

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ-HLISP--PYV 129
           + L I YT    L   LSM+K+ +KQ+  + GVP      +   T D+    +    P V
Sbjct: 123 DNLGIKYTGPNSLGCTLSMNKLVTKQIFKTSGVPTPRGTSLTSKTKDTPLDELGYYLPLV 182

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           +KP   GSS+G+ +   ++     + +S   ++ D+++IE ++ G E  CG++   +L +
Sbjct: 183 VKPCSNGSSIGVYICHTEEEYYDAIHKSFDVDNTDEVVIEPFIKGREFACGILAGKALPL 242

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
            EI VPK   + Y  KY +  ++ + P   +  +  + +QR    A +A+     SR+DF
Sbjct: 243 VEI-VPKDGLFDYANKYQAGGASEICPPVSLDEETQELIQRAGERAFEALRMDVYSRADF 301

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           +      + + LE+N  PGMT  S+ P+ A  AGY + EL   +++++   R
Sbjct: 302 IVSDADGEFYCLEMNALPGMTAASLLPKAAKAAGYEYSELCEAIIQESIKAR 353


>gi|329769753|ref|ZP_08261154.1| hypothetical protein HMPREF0433_00918 [Gemella sanguinis M325]
 gi|328838115|gb|EGF87733.1| hypothetical protein HMPREF0433_00918 [Gemella sanguinis M325]
          Length = 355

 Score =  286 bits (733), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 91/339 (26%), Positives = 156/339 (46%), Gaps = 46/339 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------------------- 38
           + ++ GG S+E  +SL + K+  +A++   + V  I +                      
Sbjct: 6   IGIVYGGKSAEHSISLLTAKSIINAIDKEKYNVFPIFISLEGNWAKGEQIKSEIKDQNEL 65

Query: 39  -------DRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSM 91
                  D S  L     K DL F VLHG  GEDG +Q  LE+++I Y  + +L+SA  M
Sbjct: 66  RFTNFNSDISSLLFEDGRKFDLVFPVLHGPNGEDGTIQGFLEIMDIAYVGNNVLSSAAGM 125

Query: 92  DKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPLKGGSSLGII 142
           DK+  KQ+ ++  +P  P      +T          +    +  P  +KP   GSS+GI 
Sbjct: 126 DKVVMKQLFAAYDLPQLPYTHFIEYTWKKNKEAVIKEVNDNLKYPVFVKPANLGSSVGIS 185

Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIA----VPKS 197
               +  +   + ++  +    +++IEQ   G  E+   V+G   +  T+      +  +
Sbjct: 186 RCNDEAELVKGIEEALKF--DKRIVIEQGAVGAKEIEVAVLGYNEVKTTDPGEIVNISTT 243

Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
           +FY YE KY+   S   +PA I  ++Y E +++A  A +AI   G+ R+DF +     ++
Sbjct: 244 EFYDYETKYTDGQSRMDIPAPIDPNLYPEFRKMAATAFRAISGSGLVRADFFYTK-EGEI 302

Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           F  E+N  PG TP S+FP + A    S+ E++  +   A
Sbjct: 303 FINEVNTMPGFTPFSMFPSLWANMNVSYPEVIEELFRLA 341


>gi|149917372|ref|ZP_01905870.1| D-alanine--D-alanine ligase A [Plesiocystis pacifica SIR-1]
 gi|149821709|gb|EDM81105.1| D-alanine--D-alanine ligase A [Plesiocystis pacifica SIR-1]
          Length = 360

 Score =  286 bits (732), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 98/341 (28%), Positives = 166/341 (48%), Gaps = 49/341 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS------------------- 41
           +A++ GG SSE +VS+ S     +A++ + F+   + V R                    
Sbjct: 6   LALVYGGRSSEHDVSIRSATEVLAAVDRSRFEPVAVAVTREGAFKTGPIDASLPGPTEAP 65

Query: 42  VGLVLAHLKP-----------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
           +  VL   +P              F +LHG +GEDG +Q + E+ ++PY  SG+LAS+L 
Sbjct: 66  LRAVLESGEPIADLGAFLRSCACTFPLLHGPYGEDGTIQGLFEVFDVPYVGSGVLASSLC 125

Query: 91  MDKMRSKQVVSSCG--VPVCPSILVNRFTMDSQHLI----------SPPYVIKPLKGGSS 138
           MDK+  K+ V++    +PV P I V+      + +             P  +KP   GSS
Sbjct: 126 MDKVAFKRYVAAAPNDIPVTPGISVDLVLEGRERVFERAHAAAEAHGFPLFVKPANQGSS 185

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL-----DVTEIA 193
           +G+   + D    LD     +  +  Q++IE+ +D  E+   V GD           EI 
Sbjct: 186 VGVS--RADDLASLDAALDLALRYDAQVVIEKGLDAREIELAVFGDGGPDTVVSPPGEII 243

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
           +PK ++Y+YE KY    +++ +P ++P      +Q LA  A +A  C G++R DFL +  
Sbjct: 244 LPKGEWYTYETKYVDDVASYAIPVELPAATTARLQELALRAFRATRCSGLARVDFLVERD 303

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           S + +  E+N  PG T +S++P++   AG S+ EL+  +V+
Sbjct: 304 SLEPWLNEVNTLPGFTSISMYPKLMGVAGVSYTELISKLVD 344


>gi|5759265|gb|AAD51060.1|AF175293_5 D-alanine:D-lactate ligase [Enterococcus faecium]
          Length = 343

 Score =  286 bits (732), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 82/336 (24%), Positives = 147/336 (43%), Gaps = 45/336 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +AVL GG S E  VS+ S    A+ ++   ++   I + +S    +              
Sbjct: 6   VAVLFGGCSEEHNVSIKSAMEIAANIDTKKYQPYYIGITKSGVWKMCEKPCLEWEQYAGD 65

Query: 52  --------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
                                     D+   ++HG FGEDG +Q +LEL  IPY    I 
Sbjct: 66  PVVFSPDRSTHGLLIQKDTGYEIQPVDVGLPMIHGKFGEDGSIQGLLELSGIPYVGCDIQ 125

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145
           +S   MDK  +  VV + G+ V    ++             P  +KP + GSS G+  + 
Sbjct: 126 SSVTCMDKALAYTVVKNAGIAVPGFRILQEGDRLETEDFVYPVFVKPARSGSSFGVNKVC 185

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYS 201
           K + +   +    +  +  ++LIE+ V G E+ C ++G+     + +V +I +    F  
Sbjct: 186 KAEELQAAI--EDARKYDSKILIEEAVTGSEVGCAILGNGNDLMAGEVDQIELRHGFFKI 243

Query: 202 Y---ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
           +   + +  S N+   +PA +P ++ + +Q+ A   ++ +GCRG++R D         + 
Sbjct: 244 HQEAQPEKGSENAVIRVPAALPDEVIERIQKTAMKIYRILGCRGLARIDLFLRE-DGCIV 302

Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             E+N  PG T  S +P M   AG++  E+L  ++E
Sbjct: 303 LNEVNTMPGFTSYSRYPRMMTAAGFTLTEILDRLIE 338


>gi|317495356|ref|ZP_07953726.1| D-alanine-D-alanine ligase [Gemella moribillum M424]
 gi|316914778|gb|EFV36254.1| D-alanine-D-alanine ligase [Gemella moribillum M424]
          Length = 355

 Score =  286 bits (732), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 90/339 (26%), Positives = 156/339 (46%), Gaps = 46/339 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI------------------------ 36
           + ++ GG S+E  VSL + K+  +A+    + V  I                        
Sbjct: 6   IGIIYGGKSAEHSVSLLTAKSIINAINKEKYNVFPIFISLNGEWARGEKITSEIKDHKEL 65

Query: 37  -----DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSM 91
                D D S  L   + K D+ F VLHG  GEDG +Q +LE+++I Y  + +L+SA  M
Sbjct: 66  IFSNFDNDISGLLFEDNHKFDIVFPVLHGPNGEDGTIQGLLEIMDIAYVGNNVLSSAAGM 125

Query: 92  DKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPLKGGSSLGII 142
           DK+  KQ+ ++  +P  P      +           +    +  P  +KP   GSS+GI 
Sbjct: 126 DKVIMKQLFAAYDLPQLPYTHFIEYNWKKNKNKIIKEINDNLKYPVFVKPANLGSSVGIS 185

Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIA----VPKS 197
               ++ +   + ++  +    ++++EQ   G  E+   V+G   +  T+      +  +
Sbjct: 186 RCNDEKQLIKGIEEALKF--DKKIVVEQGAVGAKEIEVAVLGYNEVRTTDPGEIVNISTT 243

Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
           +FY YE KY+   S   +PA I   +Y E + +A  A +AI   G+ R+DF +     K+
Sbjct: 244 EFYDYETKYTDGQSRMDIPAPIDTALYSEFREMAETAFRAISGSGLVRADFFYTK-EGKI 302

Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           F  E+N  PG TP S+FP + A    ++ E++  + + A
Sbjct: 303 FINEVNTMPGFTPFSMFPSLWANMNVTYPEIIEELFDLA 341


>gi|326790614|ref|YP_004308435.1| D-alanine/D-alanine ligase [Clostridium lentocellum DSM 5427]
 gi|326541378|gb|ADZ83237.1| D-alanine/D-alanine ligase [Clostridium lentocellum DSM 5427]
          Length = 350

 Score =  286 bits (732), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 86/342 (25%), Positives = 167/342 (48%), Gaps = 51/342 (14%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV----------------- 45
           V+ GG+S+E EVSL S  A    ++ + + +  + + +    +                 
Sbjct: 8   VIFGGMSNEYEVSLKSAAAAIENMDLSKYNLMMLGITQEGKWLRFFGDVEMIRNHTWLTD 67

Query: 46  ----------------LAHLKP--------DLAFNVLHGNFGEDGLVQAILELLEIPYTH 81
                           L  L P        D+ F +LHG FGEDG +Q +LEL  IP+  
Sbjct: 68  KSCVEAFISPSREQKGLIELSPEGYKVTEVDVVFPILHGKFGEDGTIQGLLELSGIPFVG 127

Query: 82  SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI-----SPPYVIKPLKGG 136
              LASA+ MDK  + ++V+  G+ V  SI++ +   +++  +       P  IKP K G
Sbjct: 128 CRTLASAICMDKAITHRLVAKEGIKVARSIVLYKEDRNAEQRLEEVDIKLPVYIKPAKSG 187

Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK 196
           SS+GI  +   + +   +  S ++   D+++IE+ ++G E+ C ++G+ +  + E+   +
Sbjct: 188 SSIGITKVFHFEQLEDAI--SKAFLEDDKVVIEENINGFEVGCAILGNENPMIGEVDEIE 245

Query: 197 --SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
              DF+ +  KY   NS   +PA++  ++  ++++ A   ++ + C G++R D       
Sbjct: 246 LMGDFFDFNEKYMLANSKIHMPARVEKEVAHQIKKTAIKIYEILSCTGLARVDMFLT-QG 304

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            ++++ E+N  PG T  S +P+M +  G S+ +++  ++E A
Sbjct: 305 NEIYFNEVNTLPGFTSSSRYPKMMSSIGLSYTDVITRLIELA 346


>gi|160937585|ref|ZP_02084946.1| hypothetical protein CLOBOL_02476 [Clostridium bolteae ATCC
           BAA-613]
 gi|158439654|gb|EDP17404.1| hypothetical protein CLOBOL_02476 [Clostridium bolteae ATCC
           BAA-613]
          Length = 372

 Score =  286 bits (732), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 89/341 (26%), Positives = 149/341 (43%), Gaps = 53/341 (15%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---------------- 45
           AV+ GG SSE  VS  S       ++   + V  + +      +                
Sbjct: 26  AVIFGGQSSEHIVSCMSAVNVIEHIDRTRYDVLLVGITEDGHWIKADSLEDVKNGTWRDK 85

Query: 46  ----------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                 +  ++ D+ F VLHG +GEDG +Q +LEL +IPY   G
Sbjct: 86  TVSALLLPDATKKCILLMDGDSVREVRVDVVFPVLHGLYGEDGTIQGLLELAKIPYVGCG 145

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--------SQHLISPPYVIKPLKG 135
           +L+SA+SMDK+ +K +V   GV       V R  +          +   S P  IKP   
Sbjct: 146 VLSSAVSMDKLYTKIIVDDLGVRQAAYEAVYREQLVHMESVVERVEKHFSYPVFIKPSNA 205

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195
           GSS G+      Q++   L +++   H  ++L+E+ + G E+ C V G    +V    V 
Sbjct: 206 GSSRGVTKADDRQALEAGLSEAA--RHDRKILVEETIIGREIECAVFGGGLKEVVASGVG 263

Query: 196 K----SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
           +    ++FY +E KY +  S  V   ++P    + V++ A    +A+   G++R DF   
Sbjct: 264 EILAAAEFYDFEAKYYNEESRTVTDPELPAGAAERVRQAAMDIFRAVDGYGLARVDFFV- 322

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
               +V + EIN  PG T +S++P +    G +  +L+  +
Sbjct: 323 KDDGEVVFNEINTMPGFTAISMYPMLWEARGITKDQLVDML 363


>gi|328956371|ref|YP_004373704.1| D-alanine--D-alanine ligase [Coriobacterium glomerans PW2]
 gi|328456695|gb|AEB07889.1| D-alanine--D-alanine ligase [Coriobacterium glomerans PW2]
          Length = 318

 Score =  286 bits (732), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 110/306 (35%), Positives = 161/306 (52%), Gaps = 14/306 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGF-KVSQIDV-DRSVGLVLAHLKPDLAFNVL 58
           +AVL GG S ERE+S +SG++   AL+ AG+ +V  +D  D      +     D  F  L
Sbjct: 11  IAVLAGGTSPEREISFASGESVCRALKQAGYGRVETLDPADSGFLKEIESASFDAVFIAL 70

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
           HG  GEDG +Q +L+ L IPYT SG+ ASA + DK  SK +    G+PV   + + R   
Sbjct: 71  HGAGGEDGTIQGVLDYLHIPYTGSGVRASACAADKDVSKIIFEHAGIPVARGVTLCRGDE 130

Query: 119 DSQH----LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
            +       +     +KP   GSSLG+ +I+    +P  +    ++   D++LIEQ + G
Sbjct: 131 LNPDSLVAELGKECFVKPAMNGSSLGVSLIRHPSELPKAV--ERAFESSDKVLIEQRLIG 188

Query: 175 IELTCGVMGD---ASLDVTEI-AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            E++ GV+G     +L V EI     +DFY+ E+KY      H +PA++P  I +    L
Sbjct: 189 TEISVGVLGGRDAKALPVVEIMGQEGTDFYNKEVKYIDPALVHRIPARLPTGICETAGAL 248

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A  AH+A+GC G SRSDF+          LE N  PGMT  S+FP+   + G +F E   
Sbjct: 249 ALGAHRALGCYGFSRSDFIVTEEG--PVILETNTIPGMTEASLFPDEIRHCGRTFAEACD 306

Query: 291 WMVEDA 296
            M+  A
Sbjct: 307 EMIMLA 312


>gi|256424912|ref|YP_003125565.1| D-alanyl-alanine synthetase A [Chitinophaga pinensis DSM 2588]
 gi|256039820|gb|ACU63364.1| D-alanine/D-alanine ligase [Chitinophaga pinensis DSM 2588]
          Length = 329

 Score =  286 bits (732), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 101/329 (30%), Positives = 167/329 (50%), Gaps = 34/329 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS------------------- 41
           +A++ GG S E  +S+ S       L+ + + V +I V R                    
Sbjct: 5   IALVAGGYSGEYVISVQSAAVIEKHLDSSKYNVYKISVTRDGWNYTGSDGQLIAVDRNDF 64

Query: 42  -VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
            + +    +  D  F  +HG  GEDG +Q   E+L IP+T  G++ SAL+ +K    +VV
Sbjct: 65  TLTINGNKVIFDAVFIGIHGTPGEDGRLQGYFEMLGIPFTSCGMVTSALTFNKSYCNKVV 124

Query: 101 SSCGV-PVCPSILVNRFT-MDSQHLI---SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
           +S GV  V  S+ + +    D Q ++     P  +KP +GGSS+G+  +   + +   + 
Sbjct: 125 ASLGVVNVSKSVHIFKDQPFDIQAILQELKLPVFVKPAEGGSSIGMSKVNTAEELAPAI- 183

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNS 211
              ++N   Q+LIE++V G E+TCG+         L VTEI +   +F+ YE KY+   S
Sbjct: 184 -EKAFNEDVQILIEEFVKGREITCGLYRSNGAFTVLPVTEI-ISSKEFFDYEAKYTPGVS 241

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271
             V PA+ P +I  ++Q  A   +  + CRGI R DF+++  S ++F+LE+N  PG +  
Sbjct: 242 REVTPAEAPNEIVNQIQETAKKLYNKLNCRGIVRMDFIWEEASNRLFFLEVNTMPGQSEN 301

Query: 272 SIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           SI P+    AG + +E    ++E+  CLR
Sbjct: 302 SIVPQQVRAAGKTLQEFYGTLIEE--CLR 328


>gi|325963740|ref|YP_004241646.1| D-alanine--D-alanine ligase [Arthrobacter phenanthrenivorans Sphe3]
 gi|323469827|gb|ADX73512.1| D-alanine--D-alanine ligase [Arthrobacter phenanthrenivorans Sphe3]
          Length = 382

 Score =  285 bits (731), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 99/359 (27%), Positives = 150/359 (41%), Gaps = 66/359 (18%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50
           +AVL GG SSE  VS  +      A+    ++V  I + +S   VL              
Sbjct: 19  VAVLFGGRSSEHAVSCVTAAGVLGAINKDKYEVIPIGIAKSGQWVLVSADTAQWSLAATS 78

Query: 51  ------------------------------------PDLAFNVLHGNFGEDGLVQAILEL 74
                                                D+ F +LHG FGEDG +Q +LEL
Sbjct: 79  LPEVAPSAKSVTLAEIGGEHQLIVAAPNEVPQELGTVDVVFPLLHGPFGEDGTIQGLLEL 138

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ--------HLISP 126
            +  Y  +G+LASA+ MDK   K V  S G+ V P + V                  +  
Sbjct: 139 SDTRYVGAGVLASAVGMDKHFMKVVFESAGLQVGPYVAVTDRQWRKDPESVRKQVDRLGF 198

Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186
           P  +KP + GSS+GI  ++    +  D     +  H  +L+IE  + G E+ C V+    
Sbjct: 199 PVFVKPARAGSSMGISKVESMAEL--DAAIEEARRHDLKLVIEAGITGREIECAVLEGRG 256

Query: 187 LDVTEIAVPK--------SDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
            D    ++P          +FY +  KY     +    PA IP +    V+ LA  A  A
Sbjct: 257 TDAPRTSMPGEISVAGGTHEFYDFNAKYVEDGAAALSCPADIPEEAIARVRELAAAAFDA 316

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +G  G+SR DF + P   ++   EIN  PG TP S++P+M A +G  + +L+  ++  A
Sbjct: 317 VGAEGLSRVDFFYTPA-GELIINEINTMPGFTPKSMYPQMWAASGLDYADLIDELIYLA 374


>gi|311898521|dbj|BAJ30929.1| putative D-alanine--D-alanine ligase [Kitasatospora setae KM-6054]
          Length = 380

 Score =  285 bits (731), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 92/365 (25%), Positives = 159/365 (43%), Gaps = 71/365 (19%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +A++ GG SSE  VS+ +  +   +++ A ++V  I +       L   +P         
Sbjct: 16  VAIVFGGRSSEHGVSVVTAASVLRSIDRAKYEVLPIGITHEGRWALVGDEPSRMAITDGR 75

Query: 52  -----------------------------------------DLAFNVLHGNFGEDGLVQA 70
                                                    D+   +LHG +GEDG +Q 
Sbjct: 76  MPDVDQVAESTEGQVTLPAAPGNREVVWSEPGAAPKVLGEVDVVLPLLHGPWGEDGTLQG 135

Query: 71  ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------- 120
           +LEL  +PY  SG+LASA+ MDK  +K+++ S G+      ++     +S          
Sbjct: 136 LLELSGVPYVGSGVLASAVGMDKEFTKRIIESLGLYAGEYTVLKPREWESEAGRAAARER 195

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P  +KP + GSS+GI  +K    +  D     +  H  ++++E+ V+G E+ CG
Sbjct: 196 IAALGLPLFVKPCRAGSSIGITKVKDLADL--DAAVEEARRHDPKVIVEKGVEGREIECG 253

Query: 181 VMG-----DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
           V+       AS+    +     +FY +E KY   +S   +PA++      E++R A    
Sbjct: 254 VLEFEDGPRASVPAEVLVDGDFEFYDFEAKY-IDSSEVRIPAELTAAEQAEIRRQAVEVF 312

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
             +GC G++R DF       +    E+N  PG TP+S +P+M    G  + EL+  ++  
Sbjct: 313 DGLGCEGLARVDFFLLA-DGRWMVNEVNTMPGFTPISAYPKMWEATGVPYAELIDRLL-- 369

Query: 296 ASCLR 300
           A+ LR
Sbjct: 370 AAALR 374


>gi|227524299|ref|ZP_03954348.1| D-alanine--D-alanine ligase [Lactobacillus hilgardii ATCC 8290]
 gi|227088530|gb|EEI23842.1| D-alanine--D-alanine ligase [Lactobacillus hilgardii ATCC 8290]
          Length = 375

 Score =  285 bits (731), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 94/346 (27%), Positives = 163/346 (47%), Gaps = 52/346 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI------------------------ 36
           + ++ GG SSE +VS  S      A++   + VS                          
Sbjct: 9   VGLIFGGNSSEHDVSKRSAHNIYDAMDKDKYDVSLFLMTKNGYFLGTKASTRVFNGEPED 68

Query: 37  DVDRSVGLVLAHLKP-------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
           DV R     L    P             D+ F ++HGN GEDG +Q +L LL  PY  SG
Sbjct: 69  DVVRQEIAKLDKSNPLAPILNLSEDSNIDVFFPIIHGNLGEDGTIQGLLRLLNKPYVGSG 128

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVIKPLKGGS 137
           +L SA+S DK  +K+++   GV      L+   T++          +     +KP   GS
Sbjct: 129 VLGSAMSFDKDITKKILKLAGVATTRYELLTPLTVEKYSYDSLSAELGKILFVKPANQGS 188

Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDA---SLDVTEIA 193
           S+GI  ++       D     ++ + +++L+E+ ++G  EL   V+G+    +  V  I 
Sbjct: 189 SVGIHKVETSDDY--DEAIRDAFRYDNKVLVEEAIEGPEELEISVLGNHHPIASKVGSIK 246

Query: 194 VPKSD-FYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
           VP  D FY+Y+ K+   +      P  I   + KE+ ++A  +++A+G +G++R DFL  
Sbjct: 247 VPADDAFYTYDNKFVDASQVKFDVPVDISEALSKELTKMALDSYRALGLKGMARIDFLVS 306

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
               + +  E+N  PG T +S++P++ A +G S+REL+  +++ A+
Sbjct: 307 -QDSEPYVSEVNTLPGFTNISLYPQLFAASGISYRELIDRLIQLAN 351


>gi|194476569|ref|YP_002048748.1| D-alanine--D-alanine ligase [Paulinella chromatophora]
 gi|171191576|gb|ACB42538.1| D-alanine--D-alanine ligase [Paulinella chromatophora]
          Length = 355

 Score =  285 bits (731), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 91/345 (26%), Positives = 160/345 (46%), Gaps = 52/345 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALED----AGFKVSQIDVD-----RSVGLVLAHLKP 51
           + ++ GG S E +VS+ S +    AL +      + V    +D         +  + LK 
Sbjct: 12  IGLVFGGASGEHQVSIRSAQTLVRALREGTNSERYDVKCFYIDLQGYCWPSIVAESILKE 71

Query: 52  DLAFN-----------------------------VLHGNFGEDGLVQAILELLEIPYTHS 82
           DL FN                              LHG  GEDG +Q +  L++ P+T S
Sbjct: 72  DL-FNQAIEFTNTSKQKGFRGMPEEADLIDIWCLALHGPNGEDGTIQGLFTLMQKPFTGS 130

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPL 133
           G+L SA+SMDK   K   ++ G+P  P I ++   ++          +  +  P  +KP 
Sbjct: 131 GVLGSAVSMDKQAMKACFTAVGLPQVPYICLDILELERIPNKLVNRIEKSLGYPCFVKPA 190

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
             GSSLGI      Q +   L  +S+  +  +L++E+ V   E+ C V+G + L  + + 
Sbjct: 191 NLGSSLGISKCNSRQELISGLKLASA--YDSRLVVERAVIAREIECAVVGKSVLRASVLG 248

Query: 194 VP--KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
               ++++Y Y  KY+  +S  V+PA +  +  +  + L+  A +A+G  GI+R DF + 
Sbjct: 249 EICFENEWYDYTTKYTKGSSYMVIPAHLSEETTRRARELSLEACRAVGAYGIARVDFFYV 308

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             +  ++  EIN  PG T  S++P +   +G +  EL+  +++ A
Sbjct: 309 ESTNNLWVNEINTLPGFTEQSMYPMLWMSSGLTLNELVHQLIKLA 353


>gi|313905746|ref|ZP_07839106.1| D-alanine/D-alanine ligase [Eubacterium cellulosolvens 6]
 gi|313469453|gb|EFR64795.1| D-alanine/D-alanine ligase [Eubacterium cellulosolvens 6]
          Length = 346

 Score =  285 bits (731), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 102/339 (30%), Positives = 153/339 (45%), Gaps = 48/339 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------DRSVGLVL 46
           + VL  G S+ER VS+ SG     AL   G +   +DV              D      L
Sbjct: 3   IVVLAAGTSTERTVSIVSGTGICKALRSLGHQAILVDVFAGWEDVDVQTAFDDDYDVDEL 62

Query: 47  AH----------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIP 78
           A                              + D+ F  LHG+ GEDG VQA  +L+ I 
Sbjct: 63  AAYIRGFNDKIPEMKKTRREFFGPKVLDLCREADIVFLALHGSNGEDGRVQAAFDLMGIR 122

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---DSQHLISPPYVIKPLKG 135
           YT +  ++SA+SMDK R+KQV  + GV       V R        +  +  P +IKP  G
Sbjct: 123 YTGTDYISSAISMDKSRTKQVFDASGVSTPHGCTVYRGETRKTAEEFGLELPVIIKPCCG 182

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195
           GSS+G+ +   ++ +   L    +++     +IE+++ G E TC V+   +  + EI  P
Sbjct: 183 GSSVGVTICHTEKDVEAGLAL--AFSLEQSAVIEEFIQGREFTCAVIDGKAYPIVEIH-P 239

Query: 196 KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255
           K  +Y +  KY +  +    PA+I  +   E+Q LA     A+G +   R DFL      
Sbjct: 240 KEGYYDFTNKYKAGATIETCPAQISEEKTAEMQNLAVKGAAAVGMQAYGRLDFLMRDGDE 299

Query: 256 KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           K++ LE+N  PGMTP S+ P+ AA  G  +  L   M+E
Sbjct: 300 KLYCLEVNTLPGMTPTSLVPQEAAAVGIDYAHLCQLMIE 338


>gi|251772202|gb|EES52772.1| D-alanine--D-alanine ligase [Leptospirillum ferrodiazotrophum]
          Length = 323

 Score =  285 bits (731), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 108/300 (36%), Positives = 166/300 (55%), Gaps = 6/300 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S E E+S  SGKA A AL  AGF+V + + DRS+   L    PD+AF   HG
Sbjct: 14  VAVLAGGDSDEAEISRVSGKAVAEALRKAGFEVGEFEADRSLAKTLTDFSPDVAFLATHG 73

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GE+G +Q  LE ++IPYT SG+LASA+ M KMRS+ +    G+ V  +         +
Sbjct: 74  GGGENGTLQGFLETMKIPYTGSGVLASAIGMSKMRSRALFRERGLAVPLTYAHRTEESFN 133

Query: 121 QHLISP--PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
              IS   PY++KP   GSS+G+  + + + +   + ++  ++H   +L+EQ + G E+ 
Sbjct: 134 PGYISFDPPYMVKPEAAGSSIGVKRVLRREDLADAVSEAGRYSH--WVLVEQLIPGREIQ 191

Query: 179 CGVMGDASLDVTEIAVPKSD-FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
             ++    L   EI   K++ FY+Y  KY    S H+ PA +  D   E+ R+   A + 
Sbjct: 192 SAILSGRYLGAIEIIPDKAEPFYTYASKYVPGGSRHISPAPLTPDESSELSRITIEACRV 251

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           +  RG  R D + +        LEIN  PG+TP S+ PE+A++ G SF +L++ ++  AS
Sbjct: 252 LDVRGACRLDTILN-DEGVFVILEINTLPGLTPTSLLPEIASHEGLSFTDLIIELIATAS 310


>gi|312194928|ref|YP_004014989.1| D-alanine/D-alanine ligase [Frankia sp. EuI1c]
 gi|311226264|gb|ADP79119.1| D-alanine/D-alanine ligase [Frankia sp. EuI1c]
          Length = 374

 Score =  285 bits (731), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 97/360 (26%), Positives = 161/360 (44%), Gaps = 67/360 (18%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS---------------VGLV 45
           +A++ GG S+E  +S  S +   +A++   ++V  + +                  VG  
Sbjct: 10  LAIVFGGRSTEHAISCVSARGVLAAVDREKYEVIPVGIAPDGRWLVLPDDPAVLAGVGQE 69

Query: 46  LAHLKP---------------------------------------DLAFNVLHGNFGEDG 66
           L  ++P                                       D+ F VLHG +GEDG
Sbjct: 70  LPQVRPEAGRGVVLPPDPNGASLVAVEAAPGGVPAVAGALGDLDVDVVFPVLHGPYGEDG 129

Query: 67  LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL--- 123
            +Q +LE+  +PY  SG+ ASA +MDK   K ++++ G+PV P  ++      S+     
Sbjct: 130 TIQGLLEMAGLPYVGSGVFASAAAMDKQHMKTLLAAAGLPVGPYAVLRAGETLSEAEKRR 189

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           +  P  +KP +GGSS+GI  +  D    LD    ++     ++L+E  + G E+ CGV+ 
Sbjct: 190 LGLPVFVKPARGGSSIGISRV--DAWADLDTAIKTARESDPKVLVEAAILGREIECGVLD 247

Query: 184 -------DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
                  + SL    +    + FY +  KYSS  +   +PA +P  I   V+  A  A Q
Sbjct: 248 ALGGGPPETSLPAEIVVDSAAGFYDFAAKYSSDATRLDVPADLPAGIADRVRAAAGAAFQ 307

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           A+ C G++R D        +V   E+N  PG TP S+FP M A +G  +  L+  +++ A
Sbjct: 308 ALDCAGLARVDVFLTAA-GEVVLNEVNTMPGFTPSSLFPRMWAASGLDYPALVERLIQLA 366


>gi|288573418|ref|ZP_06391775.1| D-alanine/D-alanine ligase [Dethiosulfovibrio peptidovorans DSM
           11002]
 gi|288569159|gb|EFC90716.1| D-alanine/D-alanine ligase [Dethiosulfovibrio peptidovorans DSM
           11002]
          Length = 308

 Score =  285 bits (731), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 109/306 (35%), Positives = 161/306 (52%), Gaps = 12/306 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD--RSVGLVLAHLKPDLAFNVL 58
           ++VL GG S ER VSL SGK  A  L+  G  V  +D+    ++   LA  +P+L F  L
Sbjct: 3   ISVLCGGDSPERNVSLDSGKEVAEGLKAKGHSVELMDLSSPEALFSFLAGDRPELCFVAL 62

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
           HG +GEDG +QA+L++  +PYT SG    A++MDK  SK   ++ G+ V   + V+    
Sbjct: 63  HGGWGEDGRLQAVLDMAGVPYTGSGPSGCAVAMDKTLSKGAFAAAGLDVPWGVAVHPGEG 122

Query: 119 DSQHLIS---PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175
            S           V+KP  GGS++   ++ ++  +   L  SS+W   ++ L+E YV G 
Sbjct: 123 SSPMKALSKWGTLVVKPCCGGSTVATYIVSEEDELRKAL--SSAWELENRALVEAYVAGR 180

Query: 176 ELTCGVMGDASLD---VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
           ELT  V+ D  +         +P  +FY Y  KY    S +V PA +   + + V R A 
Sbjct: 181 ELTVTVVEDRGIPRAFPIVEILPDGEFYDYRAKYG-GGSRYVSPADLEPSVVEVVSRSAE 239

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +AH+  GC   SR D   D  +R  F LEIN  PGMT  S+ P+ A   G+SF +LL  +
Sbjct: 240 IAHRVSGCSIYSRVDIRLDGKNR-PFVLEINTVPGMTSNSLVPKAAMAGGFSFPDLLDHI 298

Query: 293 VEDASC 298
           VE++  
Sbjct: 299 VEESMA 304


>gi|150003135|ref|YP_001297879.1| D-alanyl-alanine synthetase A [Bacteroides vulgatus ATCC 8482]
 gi|254882416|ref|ZP_05255126.1| D-Ala-D-Ala ligase [Bacteroides sp. 4_3_47FAA]
 gi|294778334|ref|ZP_06743758.1| D-ala D-ala ligase N-terminal domain protein [Bacteroides vulgatus
           PC510]
 gi|319640482|ref|ZP_07995204.1| D-alanine-D-alanine ligase [Bacteroides sp. 3_1_40A]
 gi|166198472|sp|A6KXU3|DDL_BACV8 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|149931559|gb|ABR38257.1| D-alanine--D-alanine ligase [Bacteroides vulgatus ATCC 8482]
 gi|254835209|gb|EET15518.1| D-Ala-D-Ala ligase [Bacteroides sp. 4_3_47FAA]
 gi|254967040|gb|ACT97556.1| putative D-alanine-D-alanine ligase [uncultured organism]
 gi|294447810|gb|EFG16386.1| D-ala D-ala ligase N-terminal domain protein [Bacteroides vulgatus
           PC510]
 gi|317387969|gb|EFV68826.1| D-alanine-D-alanine ligase [Bacteroides sp. 3_1_40A]
          Length = 324

 Score =  285 bits (731), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 86/322 (26%), Positives = 152/322 (47%), Gaps = 31/322 (9%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40
           +A++ GG SSE  VSL S +   S ++   + +  +++                    D 
Sbjct: 5   IAIVAGGDSSELVVSLRSAQGLYSFIDKERYNLYIVEMEGHRWEVVLPDGSKTPIDRNDF 64

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           S        + D A+  +HG  GE+G++Q   +LL IPY+   +L SA++ +K    Q +
Sbjct: 65  SFMENGEKKQFDFAYITIHGTPGENGILQGYFDLLGIPYSSCNVLVSAMTFNKFTCNQYL 124

Query: 101 SSCGVPVCPSILVNRF----TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
              G+ V  S+++ +       +  + I  P  IKP  GGSS G+  +K  + I   +  
Sbjct: 125 KGFGIRVAESLILRKGFEITDEEVINKIGLPCFIKPNAGGSSFGVTKVKTKEDIQPAI-- 182

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGD---ASLDVTEIAVPKSDFYSYELKYSSLNSTH 213
             ++   D+++IE ++ G E+TCG         +      V  ++F+ Y  KY+   S  
Sbjct: 183 EKAFEESDEVMIEAFMKGTEITCGCYKTSDKEVVFPITEVVSANEFFDYGAKYN-GESQE 241

Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273
           + PA++P D  + V+ L    +  +GC G+ R D++      KV  LEIN  PGMT  S 
Sbjct: 242 ITPARLPEDTAERVRLLTSAIYDILGCSGLIRIDYIITE-GEKVNLLEINTTPGMTATSF 300

Query: 274 FPEMAAYAGYSFRELLLWMVED 295
            P+    AG   ++++  ++E+
Sbjct: 301 IPQQVRAAGLDIKDVMTDIIEN 322


>gi|197302342|ref|ZP_03167401.1| hypothetical protein RUMLAC_01073 [Ruminococcus lactaris ATCC
           29176]
 gi|197298773|gb|EDY33314.1| hypothetical protein RUMLAC_01073 [Ruminococcus lactaris ATCC
           29176]
          Length = 352

 Score =  285 bits (730), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 97/351 (27%), Positives = 157/351 (44%), Gaps = 55/351 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------------------- 38
           + VL GG+S+ER+VSLSS       L + G     +DV                      
Sbjct: 3   IIVLAGGLSTERDVSLSSAAGICRTLLEKGHDAFLLDVFMGLEHTPENLEDVFTLPDHGL 62

Query: 39  --------DRSVGLVLAHLKPD------------------LAFNVLHGNFGEDGLVQAIL 72
                   +      +   +PD                  + F  LHG  GE+G +QA  
Sbjct: 63  DIVKNISTEEPDLAAVKASRPDQSDCFFGPNVIELCRLADITFLGLHGGEGENGKLQAAF 122

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD---SQHLISPPYV 129
           +LL I YT    L  A++M K  +KQ+    GV       + +   D       ++ P V
Sbjct: 123 DLLGIKYTGPDSLGCAVAMHKGVAKQIFLESGVDTPGGGTLYKNGSDLSYQSLGLTLPVV 182

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           +KP  GGSS+G+ ++  D+     L    S+++ D++++E Y+ G E  CG++   +L  
Sbjct: 183 VKPCSGGSSIGVYIVNTDEEYQNAL--EHSFHYEDEIVVEPYIKGREFACGIIDGKALPP 240

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
            EI +PK+ F+ Y  KY    +  V PA IP ++ + ++ L   A  A+     SR+DFL
Sbjct: 241 IEI-IPKTGFFDYANKYQDGATMEVCPADIPEEVAERMKALTVKAFNALKLNVYSRADFL 299

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
            D     ++ LE+N  PGMT  S+ P+ A  AG  + +L   +++ +   R
Sbjct: 300 LDA-EGSLYCLEMNTLPGMTSASLMPKEAKVAGIEYSDLCELIIKKSMEAR 349


>gi|4405962|gb|AAD19835.1| D-alanyl-D-alanine ligase [Amycolatopsis orientalis]
          Length = 348

 Score =  285 bits (730), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 85/336 (25%), Positives = 149/336 (44%), Gaps = 45/336 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           + +L GG+S E  +S+ S +     L+   ++   I + +S   +L              
Sbjct: 6   IGILFGGLSEEHPISIKSAREVQKHLDLEKYEPYYIGITQSGSWMLCDGPAEDWENGDVR 65

Query: 47  ---------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
                                  +  D+   VLHG FGEDG +Q +LE+  IPY    + 
Sbjct: 66  PAVLSPDRGVHGLLVLDEGKYETIALDVVLPVLHGKFGEDGAMQGLLEISGIPYVGCDLP 125

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145
           +S + +DK  +  VV   G+      +V          ++ P  +KP + GSS G+  + 
Sbjct: 126 SSVMCIDKSLTYSVVRGAGIATPTFHIVTPDNDVDPDALNYPVFVKPARSGSSFGVSKVS 185

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYS 201
             + +P  L  + +  +  ++LIE+ V G E+ C ++GD     + +V  +A+    F  
Sbjct: 186 SKEELPAAL--AEARQYDAKILIEEAVIGSEIGCSILGDGEDLFAGEVDRVALTHGFFKI 243

Query: 202 YELK---YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
           ++ K     S NS+ ++PA IP      VQ  A + ++A+GC G++R D         V 
Sbjct: 244 HQEKSPETGSENSSFIVPADIPDASRDLVQETAKVIYRALGCSGLARVDLFL-KEDGSVV 302

Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             E+N  PG+T  S +P M   AG S  +++  +V+
Sbjct: 303 LNEVNTLPGLTSYSRYPRMMNAAGLSLGDVIDRLVK 338


>gi|227529650|ref|ZP_03959699.1| D-alanine--D-alanine ligase [Lactobacillus vaginalis ATCC 49540]
 gi|227350440|gb|EEJ40731.1| D-alanine--D-alanine ligase [Lactobacillus vaginalis ATCC 49540]
          Length = 426

 Score =  285 bits (730), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 95/343 (27%), Positives = 164/343 (47%), Gaps = 52/343 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           +A+L GG SSE +VS  S      AL+   + VS     +   L+               
Sbjct: 55  IALLFGGNSSEHDVSKRSAHNIYDALDKDKYNVSLFMFTKDGILLGNSASQRIFNGDDED 114

Query: 46  ---------------------LAHLK-PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                L  +K  DL F V+HGN GEDG VQ + +LL+ PY  S 
Sbjct: 115 QVVQEEYQKMNLNQPLAPIMALNEMKAVDLFFPVIHGNLGEDGTVQGLFKLLKKPYVGSN 174

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFTMDS---QHLISPPYVIKPLKGGS 137
           I ASA++ DK  +K++++  G+   P ++V   NR        +  I     +KP K GS
Sbjct: 175 IAASAMAFDKDLTKKILTEAGIRNTPYVVVTPENRADYPWAKVEEKIGDLAFVKPAKQGS 234

Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVT---EIA 193
           S+GI  +   +     L  +  +++  ++L+EQ +D   E+   ++G+     +    + 
Sbjct: 235 SVGIHKVTNAEEYEKALDDAFKYDY--KILVEQGIDHPQEVEISILGNEHPVASKLGAVR 292

Query: 194 VPKSD-FYSYELKYSSLNS-THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
           VP+ D FY+YE K+   +     LP K+P  + +E+  +A  A++ +G +G++R DFL D
Sbjct: 293 VPEGDSFYNYENKFVDASGVVFELPVKLPEYLTEEITSMALKAYKVLGMKGMARIDFLVD 352

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             +   +  E N  PG T +S++P+M   +G  + +L+  +++
Sbjct: 353 -SNNVPYLGEPNTLPGFTNISLYPQMWEVSGIGYSDLIDRLIQ 394


>gi|212691723|ref|ZP_03299851.1| hypothetical protein BACDOR_01218 [Bacteroides dorei DSM 17855]
 gi|212665728|gb|EEB26300.1| hypothetical protein BACDOR_01218 [Bacteroides dorei DSM 17855]
          Length = 324

 Score =  285 bits (730), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 87/322 (27%), Positives = 152/322 (47%), Gaps = 31/322 (9%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40
           +A++ GG SSE  VSL S +   S ++   + +  +++                    D 
Sbjct: 5   IAIVAGGDSSELVVSLRSAQGLYSFIDKERYNLYIVEMEGHRWEVVLPDGSKTPIDRNDF 64

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           S          D A+  +HG  GE+G++Q   +LL IPY+   +L SA++ +K    Q +
Sbjct: 65  SFMENGEKKHFDFAYITIHGTPGENGILQGYFDLLGIPYSSCNVLVSAMTFNKFTCNQYL 124

Query: 101 SSCGVPVCPSILVNRF----TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
              G+ V  S+++ +       +  + I  P  IKP  GGSS G+  +K  + I   +  
Sbjct: 125 KGFGIRVAESLILRKGFEITDEEVINKIGLPCFIKPNAGGSSFGVTKVKTKEDIQPAI-- 182

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGD---ASLDVTEIAVPKSDFYSYELKYSSLNSTH 213
             ++   D+++IE ++ G E+TCG         +      V  ++F+ Y  KY+   S  
Sbjct: 183 EKAFKESDEVMIEAFMRGTEITCGCYKTSDKEVVFPITEVVSANEFFDYGAKYN-GESQE 241

Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273
           + PA++P DI + V+ L    +  +GC G+ R D++      KV  LEIN  PGMT  S 
Sbjct: 242 ITPARLPEDIAERVRLLTSAIYDILGCSGLIRIDYIITE-GEKVNLLEINTTPGMTATSF 300

Query: 274 FPEMAAYAGYSFRELLLWMVED 295
            P+    AG   ++++  ++E+
Sbjct: 301 IPQQVRAAGLDIKDVMTDIIEN 322


>gi|86144058|ref|ZP_01062396.1| D-alanylalanine synthetase [Leeuwenhoekiella blandensis MED217]
 gi|85829518|gb|EAQ47982.1| D-alanylalanine synthetase [Leeuwenhoekiella blandensis MED217]
          Length = 330

 Score =  285 bits (730), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 95/328 (28%), Positives = 163/328 (49%), Gaps = 34/328 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40
           +AV+MGG SSE  +S+ SG      L+ + + V  I +                    D 
Sbjct: 6   IAVVMGGFSSEVNISILSGNTVCKHLDQSKYNVFPIHILKEGWFCKHADHKPIPVDKADF 65

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           S+ +    +  D  FN +HG  GEDG++QA L+LL IP T      +AL+ +K     V+
Sbjct: 66  SINVEGTKITFDCVFNTIHGTPGEDGILQAYLKLLNIPQTACNYYEAALTFNKRDCIGVL 125

Query: 101 SSCGVPVCPSILVNRFTM----DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
            + G+    + L+N+       +    +  P  +K  K GSS G+  +   + +   +  
Sbjct: 126 KAYGIKTATNYLLNKGDAIHATEILEQVGLPCFVKANKAGSSYGVSKVYGAEELEGAI-- 183

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNST 212
             ++   D+++IE +++G E++ GV+       +L VTEI V  +DF+ Y+ KY    S 
Sbjct: 184 EVAFKEDDEIIIESFLEGTEVSVGVINYQGNVMALPVTEI-VSDNDFFDYQAKYE-GKSQ 241

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
            + PA+I  +  + VQR A    + +  +G++R++F+F   + +  +LE+N  PG++P S
Sbjct: 242 EITPARITDEQTEAVQREAEKVFKILKLKGLTRAEFIFH--NGEPHFLEVNTTPGLSPAS 299

Query: 273 IFPEMAAYAGYSFRELLLWMVEDASCLR 300
           I P+ A  AG S  EL   ++E A   R
Sbjct: 300 IIPQQAKVAGISLPELFDNVIEQAMRDR 327


>gi|296171291|ref|ZP_06852695.1| D-alanine-D-alanine ligase [Mycobacterium parascrofulaceum ATCC
           BAA-614]
 gi|295894259|gb|EFG74016.1| D-alanine-D-alanine ligase [Mycobacterium parascrofulaceum ATCC
           BAA-614]
          Length = 363

 Score =  285 bits (730), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 101/360 (28%), Positives = 156/360 (43%), Gaps = 65/360 (18%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD-------- 52
           +AV+ GG S+E  +S  S  +    L+   F+V  I +      VL    PD        
Sbjct: 3   VAVVFGGRSNEHAISCVSAGSILRNLDPERFEVVAIGITPQGSWVLTDGDPDALAISNRQ 62

Query: 53  ---------------------------------------LAFNVLHGNFGEDGLVQAILE 73
                                                  + F VLHG +GEDG +Q +LE
Sbjct: 63  LPEVTAQSGTELALPADPLRSGQLVSLSTGAGEVLASVDVVFPVLHGPYGEDGTIQGLLE 122

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTM--DSQHLISPPYV 129
           L  +PY  +G+LASA  MDK  +K++  + G+PV    ++   R T+  D    +  P  
Sbjct: 123 LAGVPYVGAGVLASAAGMDKEFTKKLFVAEGLPVGDYAVLRPSRSTLRPDECERLGLPVF 182

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           +KP +GGSS+G+  +     +      + +  H  ++++E  + G E+ CGV+      V
Sbjct: 183 VKPARGGSSIGVTRVSSWDDLAA--AVAVARRHDPKVIVEAAITGREVECGVLEMPDGSV 240

Query: 190 -----TEIAVP-----KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
                 EI V      +  FY +  KY    +   +PAK+  DI   ++ LA  A +AI 
Sbjct: 241 EASTLGEIRVAGVRGREDSFYDFATKYLDDAAELDVPAKVDDDIADAIRDLAIRAFKAID 300

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
           C+G++R DF            EIN  PG T +S++P M A +G  +  LL  MVE A   
Sbjct: 301 CQGLARVDFFLT--DDGPVLNEINTMPGFTTISMYPRMWAASGVDYPTLLATMVETALAR 358


>gi|332884259|gb|EGK04527.1| D-alanine-D-alanine ligase [Dysgonomonas mossii DSM 22836]
          Length = 326

 Score =  285 bits (730), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 89/323 (27%), Positives = 155/323 (47%), Gaps = 34/323 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           +A++ GG SSE  VS  S     S L+   + + ++ + +    V               
Sbjct: 5   IAIVWGGYSSEVIVSAKSMAGVYSFLDKEKYNLYKVKIVKEGWTVEIDGETHPVDKNDFT 64

Query: 47  ------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
                   +K D AF ++HG  GEDG +QA  ++L+IPY+  G++ S+L+M+K      +
Sbjct: 65  FHTLEKEKIKIDFAFIIIHGTPGEDGHLQAYFDMLDIPYSTCGMMPSSLTMNKFVCNNFL 124

Query: 101 SSCGVPVCPSILVNRFTM----DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
            + G+ V  S+ +N+ +     +    +  P  +KP  GGSS     +K    +   +  
Sbjct: 125 RNFGIRVADSLYLNKDSKYEINNITEKLGLPMFVKPNTGGSSFATTKVKSVDQLQKAIDV 184

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNST 212
             ++     ++IE ++ G E+TCG       +    +TE+    +DF+ Y+ KY      
Sbjct: 185 --AFGETPDVIIESFIKGTEVTCGCYKIKNKEVVFPLTEVVTS-NDFFDYDAKYE-GQVE 240

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
            + PA+I  +I +E+QRL    +  +G +GI R DF+      K + LE+N  PGMT  S
Sbjct: 241 EITPARISQEITEEIQRLTRKIYDLVGAKGIIRVDFII--SDNKPYLLEVNTVPGMTQTS 298

Query: 273 IFPEMAAYAGYSFRELLLWMVED 295
             P+  A AG +  E+L  ++E+
Sbjct: 299 FIPQQVAAAGLNITEVLTEIIEN 321


>gi|298252869|ref|ZP_06976663.1| D-alanine-D-alanine ligase [Gardnerella vaginalis 5-1]
 gi|297533233|gb|EFH72117.1| D-alanine-D-alanine ligase [Gardnerella vaginalis 5-1]
          Length = 380

 Score =  285 bits (730), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 91/372 (24%), Positives = 155/372 (41%), Gaps = 79/372 (21%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +  L GG + E  +S  S     SA+++  F + +I + +    ++    P         
Sbjct: 6   VVFLYGGKADEHSISCISAAGVLSAVDENRFDIVRIAITKQGEWIVGGEDPRNFHMEEGE 65

Query: 52  ---------------------------------------DLAFNVLHGNFGEDGLVQAIL 72
                                                  D  F VLHG  GEDG +Q +L
Sbjct: 66  LPVITKTAGTRDVVLDPAKGADGFLARENDGTLTSLGHIDAVFPVLHGPNGEDGTLQGLL 125

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV----------NRFTMDSQH 122
           E++++PY   G+LASA  MDK  +KQ+  + G+ V P I +          NRF   ++ 
Sbjct: 126 EMMQVPYVGCGVLASAACMDKYYAKQLFKAAGINVAPGIALDARKFASDAKNRFDAYAEE 185

Query: 123 L--------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
           +        +  P  +KP + GSS G+  ++   +  L      +  H  ++L+EQ +D 
Sbjct: 186 ILAQVEAAKLEYPLFVKPSRAGSSFGVTKVESRDAKALAEAIFEASEHDWRVLVEQGIDA 245

Query: 175 IELTCGVM---GDASLDVTEI--------AVPKSDFYSYELKYSSLNSTHVL-PAKIPLD 222
            E+ C V+          +             +  FY ++ KY    ++HV  PA +P +
Sbjct: 246 REIECAVLAARDGEEPKASWPGEVVLDKREAGEDQFYDFDSKYMDSAASHVEVPANLPAE 305

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAG 282
             + V++ A  A +A   RG+SR D        +V   EIN  PG TP+S++P+     G
Sbjct: 306 TLERVRKTALAAFKAADGRGLSRVDSFVTK-DGRVILNEINTMPGFTPISMYPKAWEATG 364

Query: 283 YSFRELLLWMVE 294
            S+ +L+  ++E
Sbjct: 365 ISYSDLITKLIE 376


>gi|299822342|ref|ZP_07054228.1| D-alanine--D-alanine ligase [Listeria grayi DSM 20601]
 gi|299815871|gb|EFI83109.1| D-alanine--D-alanine ligase [Listeria grayi DSM 20601]
          Length = 371

 Score =  285 bits (730), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 87/352 (24%), Positives = 158/352 (44%), Gaps = 61/352 (17%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR---------------------- 40
           VL GG S+E EVSL +  +   A++   F++  I +                        
Sbjct: 7   VLYGGKSAEHEVSLQTAFSVIGAVQLDKFEIQPIYITNEGEWISGPALTEPIRFAEQLRF 66

Query: 41  ---------------------SVGLVLAHLKPD-LAFNVLHGNFGEDGLVQAILELLEIP 78
                                + G +L +   D + F +LHG  GEDG +Q  LE+L++P
Sbjct: 67  LDGETTHLSQTEGEPSHGEWINPGEILGYKTEDTVVFPLLHGPNGEDGTIQGFLEVLQLP 126

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYV 129
           Y  +G+L+SA +MDK+  K+V +   +P  P++ +              D + ++  P  
Sbjct: 127 YVGNGVLSSAAAMDKIIMKKVFADAAIPQVPAVSLRLVDWQKHQSEMLSDIEEVLQYPVF 186

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL-- 187
           +KP   GSS+GI      +++      + ++    +++IEQ V   E+   V+G+ +   
Sbjct: 187 VKPANLGSSVGITKATSKEAL--AASINEAFQFDRRIVIEQGVVAREIEIAVLGNDTPVC 244

Query: 188 DVTEIAVPKSD---FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244
            V    +P+     FY Y+ KY+   +   +PAKI   + ++++  A  A+  +   G+ 
Sbjct: 245 SVPGEILPEDGLAPFYDYKTKYTDNKTELAIPAKIDPAVLEQMKEYAIQAYLGLDAAGLV 304

Query: 245 RSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           R+DF       ++   E+N  PG TP S++P +   +G  +  L+  +VE A
Sbjct: 305 RADFFLT-QDNQILLNEVNTMPGFTPYSMYPLLWNESGIPYAALIERLVELA 355


>gi|306844174|ref|ZP_07476767.1| D-alanine--D-alanine ligase [Brucella sp. BO1]
 gi|306275449|gb|EFM57186.1| D-alanine--D-alanine ligase [Brucella sp. BO1]
          Length = 353

 Score =  285 bits (730), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 93/347 (26%), Positives = 165/347 (47%), Gaps = 51/347 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           + VL GG S+E +VS+ S     +AL+ A ++   + V R+   +L+             
Sbjct: 8   IVVLFGGRSAEHDVSVLSATNVMNALDPAKYEAVPVFVTRAGQWLLSRFVNGALEKPSSG 67

Query: 50  --------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                     K D+ F VLHG  GEDG VQ + ++  +P    G
Sbjct: 68  AELCLVPGGCGRAIVVPDAGAPYEANKIDIIFPVLHGLHGEDGAVQGLAQVARVPLAGCG 127

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSL 139
           I  SA ++DK  +K++ +  G+    S+ + R  + +    +  +  P  IKP + GSS+
Sbjct: 128 IPGSANALDKDIAKRLFNEAGLSTAKSVTITREEVPAFSALEQALGLPIFIKPARQGSSV 187

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD--ASLDVT---EIAV 194
           G+  +  +      +  S  + + D+LL E+++   E+ CGV+ D   +L V+   EI  
Sbjct: 188 GVHKVVTEADYQAAM--SDGFTYDDKLLAEEFIQAREVECGVLEDEGGALFVSRAGEIVP 245

Query: 195 PKSD-FYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            +S  FYSY+ KY   + T +  PA++P  +  E++ +A  A + +GC  ++R DF    
Sbjct: 246 AESHCFYSYDAKYIDADGTEIKVPAELPEQVENEIRAIAAKAFRVLGCDSMARVDFFVTA 305

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
             R++   EIN  PG T +S++ ++ A +G S+ E++  +V      
Sbjct: 306 -DRRIVLNEINTIPGFTDMSMYSKVMAVSGVSYPEIINRLVAHGLAR 351


>gi|145597093|ref|YP_001161390.1| D-alanine--D-alanine ligase [Salinispora tropica CNB-440]
 gi|145306430|gb|ABP57012.1| D-alanine--D-alanine ligase [Salinispora tropica CNB-440]
          Length = 326

 Score =  285 bits (730), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 92/311 (29%), Positives = 150/311 (48%), Gaps = 18/311 (5%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62
           VL GG+S ER+VSL SG+    AL   G +    D D ++   L    PD     LHG  
Sbjct: 18  VLAGGLSYERDVSLRSGRRVLDALRAVGVEAELRDADVALLPALVADPPDAVVIALHGAT 77

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ- 121
           GEDG ++ +L+L ++PY      AS  + DK  +K V+    +P    + +         
Sbjct: 78  GEDGSLRGVLDLCDVPYVGCDARASRRAWDKPSAKTVLREAHIPTPDWVALPHDRFSELG 137

Query: 122 ---------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                      +  P ++KP +GGS LG  V++   ++P  ++    + +    L+E+Y+
Sbjct: 138 AVAVLDRIVDRLGLPLMVKPAQGGSGLGAAVVRDSAALPAAMV--GCFAYDSTALVERYL 195

Query: 173 DGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
            G ++   V+    G  +L   EI VP++  Y Y  +Y++  +T   PA++  ++ + V 
Sbjct: 196 SGTDVAVSVIDLGEGPQALPAVEI-VPRNGVYDYAARYTAGRTTWHTPARLTSEVAEAVA 254

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
            LA  AH A+G R +SR D + D    +   L +NV PGMT  S+ P  A  AG  F  +
Sbjct: 255 GLAVAAHTALGLRDLSRVDLIVDA-DGQPHVLGVNVAPGMTETSLLPLAAQAAGLDFGRM 313

Query: 289 LLWMVEDASCL 299
           +  +V  A+  
Sbjct: 314 IGTLVSQAAAR 324


>gi|227520089|ref|ZP_03950138.1| D-alanine--D-alanine ligase [Enterococcus faecalis TX0104]
 gi|229546687|ref|ZP_04435412.1| D-alanine--D-alanine ligase [Enterococcus faecalis TX1322]
 gi|229548782|ref|ZP_04437507.1| D-alanine--D-alanine ligase [Enterococcus faecalis ATCC 29200]
 gi|257421093|ref|ZP_05598083.1| D-Ala:D-Ala ligase [Enterococcus faecalis X98]
 gi|293383723|ref|ZP_06629630.1| D-alanine--D-alanine ligase [Enterococcus faecalis R712]
 gi|307267923|ref|ZP_07549311.1| D-ala D-ala ligase [Enterococcus faecalis TX4248]
 gi|307271843|ref|ZP_07553111.1| D-ala D-ala ligase [Enterococcus faecalis TX0855]
 gi|312904404|ref|ZP_07763564.1| D-ala D-ala ligase [Enterococcus faecalis TX0635]
 gi|312978682|ref|ZP_07790409.1| D-ala D-ala ligase [Enterococcus faecalis DAPTO 516]
 gi|227072433|gb|EEI10396.1| D-alanine--D-alanine ligase [Enterococcus faecalis TX0104]
 gi|229306090|gb|EEN72086.1| D-alanine--D-alanine ligase [Enterococcus faecalis ATCC 29200]
 gi|229308193|gb|EEN74180.1| D-alanine--D-alanine ligase [Enterococcus faecalis TX1322]
 gi|257162917|gb|EEU92877.1| D-Ala:D-Ala ligase [Enterococcus faecalis X98]
 gi|291078799|gb|EFE16163.1| D-alanine--D-alanine ligase [Enterococcus faecalis R712]
 gi|306511349|gb|EFM80351.1| D-ala D-ala ligase [Enterococcus faecalis TX0855]
 gi|306515564|gb|EFM84091.1| D-ala D-ala ligase [Enterococcus faecalis TX4248]
 gi|310632231|gb|EFQ15514.1| D-ala D-ala ligase [Enterococcus faecalis TX0635]
 gi|311288389|gb|EFQ66945.1| D-ala D-ala ligase [Enterococcus faecalis DAPTO 516]
 gi|315027032|gb|EFT38964.1| D-ala D-ala ligase [Enterococcus faecalis TX2137]
 gi|315034368|gb|EFT46300.1| D-ala D-ala ligase [Enterococcus faecalis TX0027]
 gi|315148004|gb|EFT92020.1| D-ala D-ala ligase [Enterococcus faecalis TX4244]
 gi|315149605|gb|EFT93621.1| D-ala D-ala ligase [Enterococcus faecalis TX0012]
 gi|315153131|gb|EFT97147.1| D-ala D-ala ligase [Enterococcus faecalis TX0031]
 gi|315155150|gb|EFT99166.1| D-ala D-ala ligase [Enterococcus faecalis TX0043]
 gi|315171748|gb|EFU15765.1| D-ala D-ala ligase [Enterococcus faecalis TX1342]
 gi|329575931|gb|EGG57452.1| D-ala D-ala ligase protein [Enterococcus faecalis TX1467]
          Length = 351

 Score =  285 bits (729), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 80/340 (23%), Positives = 148/340 (43%), Gaps = 51/340 (15%)

Query: 5   MGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---LAHLKPD--------- 52
            GG S E +VS+ S  +  +A+    ++V  + + +    V   L   +P          
Sbjct: 2   YGGRSEEHDVSVLSAYSVLNAIYYKYYQVQLVFISKDGQWVKGPLLSERPQNKEVLHLTW 61

Query: 53  -------------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87
                                    + F VLHG  GEDG +Q  +E + +PY  +G+LAS
Sbjct: 62  AQTPEETGEFSGKRISPSEIYEEEAIVFPVLHGPNGEDGTIQGFMETINMPYVGAGVLAS 121

Query: 88  ALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPLKGGSS 138
           A +MDK+ +K ++ + G+P  P + V R              +  +  P  +KP   GSS
Sbjct: 122 ANAMDKIMTKYLLQTVGIPQVPFVPVLRSDWKGNPKEVFEKCEGSLIYPVFVKPANMGSS 181

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPK 196
           +GI   +  + +        ++ +  + ++EQ ++  E+   ++G+  +  T     V  
Sbjct: 182 VGISKAENREELQE--ALEEAFRYDARAIVEQGIEAREIEVAILGNEDVRTTLPGEVVKD 239

Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256
             FY Y+ KY +      +PA +P ++  + Q  A  A+  +   G+SR DF       +
Sbjct: 240 VAFYDYDAKYINNTIEMQIPAHVPEEVAHQAQEYAKKAYIMLDGSGLSRCDFFLTSK-NE 298

Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +F  E+N  PG T  S++P +    G  + +L+  +++ A
Sbjct: 299 LFLNELNTMPGFTDFSMYPLLWENMGLKYSDLIEELIQLA 338


>gi|288929437|ref|ZP_06423282.1| D-alanine--D-alanine ligase [Prevotella sp. oral taxon 317 str.
           F0108]
 gi|288329539|gb|EFC68125.1| D-alanine--D-alanine ligase [Prevotella sp. oral taxon 317 str.
           F0108]
          Length = 330

 Score =  285 bits (729), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 93/328 (28%), Positives = 153/328 (46%), Gaps = 37/328 (11%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------------------- 40
           +A++ GG SSE EVSL S +   S  +   + V  +D++R                    
Sbjct: 5   IAIVCGGNSSEHEVSLRSARGLYSFFDKDKYNVYIVDIERMNWKVDLGNGEKATIDKNNF 64

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           S      H+  D A+  +HG  GE+G++Q   EL+++PY+ SG+L  AL+ DK      +
Sbjct: 65  SFEHEGTHVFFDYAYITIHGTPGENGIMQGYFELIDMPYSTSGVLVEALTFDKYVLNNYL 124

Query: 101 SSCGVPVCPSILVNR------FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154
              GV V  SILV R           +  +  P  +KP   GSS G+  +K    +   L
Sbjct: 125 RGFGVNVAKSILVRRGQEYGIDERAVEEQLGMPCFVKPAADGSSFGVSKVKNVDQLAPAL 184

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLN 210
            ++      D  +IE ++DG E++ G          L  TE+ V  ++F+ Y+ KY+   
Sbjct: 185 RKAL--MEDDSAVIESFLDGTEISVGCYRVKGETKVLPATEV-VSHNEFFDYDAKYN-GQ 240

Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL---SRKVFWLEINVQPG 267
              + PA+I  +  + V       ++ +GC GI R D++       + K+  +E+N  PG
Sbjct: 241 VEEITPARIADETARRVADETARIYELLGCNGIIRIDYILTKEPDGTDKINLIEVNTTPG 300

Query: 268 MTPVSIFPEMAAYAGYSFRELLLWMVED 295
           MTP S  P+    AG   +++L  +VE+
Sbjct: 301 MTPTSFIPQQVRAAGMEMKDVLSDIVEN 328


>gi|291549120|emb|CBL25382.1| D-alanine--D-alanine ligase [Ruminococcus torques L2-14]
          Length = 350

 Score =  285 bits (729), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 98/351 (27%), Positives = 159/351 (45%), Gaps = 55/351 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------------------- 38
           + VL GG+S+ER+VSLSS       L + G     +DV                      
Sbjct: 3   IIVLAGGLSTERDVSLSSAAGICRTLVEKGHDAFLLDVFMGLENAPENLEDVFTLPDHGL 62

Query: 39  --------DRSVGLVLAHLKPD------------------LAFNVLHGNFGEDGLVQAIL 72
                   +      +   +PD                  + F  LHG  GE+G +QA  
Sbjct: 63  EIVKNISTEEPDLEAVKASRPDQSDCFFGPNVIELCRLADITFLGLHGGEGENGKLQASF 122

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---ISPPYV 129
           +LL I YT    L  A++M K  +KQ+    GV       + + + D  +    ++ P V
Sbjct: 123 DLLGIKYTGPDSLGCAVAMHKGVAKQIFLESGVDTPGGGTIYKNSEDQSYQSLGLTLPVV 182

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           +KP  GGSS+G+ ++  D+     L +  S+ + D+L++E Y+ G E  CG++   +L  
Sbjct: 183 VKPCSGGSSIGVYIVNTDEEYAEALKK--SFRYEDELVVEPYIKGREFACGIIDGTALPP 240

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
            EI +PK+ F+ Y  KY    ++ V PA IP ++ + ++ L   A  A+     SR+DFL
Sbjct: 241 IEI-IPKTGFFDYANKYQDGATSEVCPADIPEEVAERMKELTVKAFNALKLNVYSRADFL 299

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
            D     +F LE+N  PGMT  S+ P+ A   G  + +L   +++ +   R
Sbjct: 300 LDAEGN-LFCLEMNTLPGMTSASLLPKEAKVYGIEYGDLCELIIKKSMEAR 349


>gi|254719320|ref|ZP_05181131.1| D-alanine--D-alanine ligase A [Brucella sp. 83/13]
 gi|256369692|ref|YP_003107202.1| D-alanine--D-alanine ligase A [Brucella microti CCM 4915]
 gi|265984322|ref|ZP_06097057.1| D-alanine-D-alanine ligase A [Brucella sp. 83/13]
 gi|306839095|ref|ZP_07471912.1| D-alanine--D-alanine ligase [Brucella sp. NF 2653]
 gi|255999854|gb|ACU48253.1| D-alanine--D-alanine ligase A [Brucella microti CCM 4915]
 gi|264662914|gb|EEZ33175.1| D-alanine-D-alanine ligase A [Brucella sp. 83/13]
 gi|306405642|gb|EFM61904.1| D-alanine--D-alanine ligase [Brucella sp. NF 2653]
          Length = 353

 Score =  285 bits (729), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 93/347 (26%), Positives = 164/347 (47%), Gaps = 51/347 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           + VL GG S+E +VS+ S     +AL+ A ++   + V R+   +L              
Sbjct: 8   IVVLFGGRSAEHDVSVLSATNVMNALDPAKYEAVPVFVTRAGQWLLSRFVNGALEKPSSG 67

Query: 47  -----------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                     K D+ F VLHG  GEDG VQ + ++  +P    G
Sbjct: 68  AELCLVPGGCGRAIVVPDAGAPYEADKIDIIFPVLHGLHGEDGAVQGLAQVARVPLAGCG 127

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSL 139
           I  SA ++DK  +K++ +  G+    S+ + R  + +    +  +  P  IKP + GSS+
Sbjct: 128 IPGSANALDKDIAKRLFNEAGLSTAKSVTITREEVPAFSALEQALGLPIFIKPARQGSSV 187

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD--ASLDVT---EIAV 194
           G+  +  +      +  S  + + D+LL E+++   E+ CGV+ D   +L V+   EI  
Sbjct: 188 GVHKVVTEADYQAAM--SDGFTYDDKLLAEEFIQAREVECGVLEDEGGALFVSRAGEIVP 245

Query: 195 PKSD-FYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            +S  FYSY+ KY   + T +  PA++P  +  E++ +A  A + +GC  ++R DF    
Sbjct: 246 AESHCFYSYDAKYIDADGTEIKVPAELPEQVENEIRAIAAKAFRVLGCDSMARVDFFVTA 305

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
             R++   EIN  PG T +S++ ++ A +G S+ E++  +V      
Sbjct: 306 -DRRIVLNEINTIPGFTDMSMYSKVMAVSGVSYPEIINRLVAHGLAR 351


>gi|148560339|ref|YP_001259185.1| D-alanyl-alanine synthetase A [Brucella ovis ATCC 25840]
 gi|148371596|gb|ABQ61575.1| D-alanine--D-alanine ligase A [Brucella ovis ATCC 25840]
          Length = 366

 Score =  285 bits (729), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 94/347 (27%), Positives = 166/347 (47%), Gaps = 51/347 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           + VL GG S+E +VS+ S     +AL+ A ++   + V R+   +L              
Sbjct: 21  IVVLFGGRSAEHDVSVLSATNVMNALDPAKYEAVPVFVTRAGQWLLSRFVNGALEKPSSG 80

Query: 47  -----------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                     K D+ F VLHG  GEDG VQ + ++ ++P    G
Sbjct: 81  AELCLVPGGCGRAIVVPDAGAPYEADKIDIIFPVLHGLHGEDGAVQGLAQVAQVPLAGCG 140

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSL 139
           I  SA ++DK  +K++V+  G+    S+ + R  + +    +  +  P  IKP + GSS+
Sbjct: 141 IPGSANALDKDIAKRLVNEAGLSTAKSVTITREEVPAFSALEQALGLPIFIKPARQGSSV 200

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD--ASLDVT---EIAV 194
           G+  +  +      +  S  + + D+LL E+++   E+ CGV+ D   +L V+   EI  
Sbjct: 201 GVHKVVTEADYQAAM--SDGFTYDDKLLAEEFIQAREVECGVLEDEGGALFVSRAGEIVP 258

Query: 195 PKSD-FYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            +S  FYSY+ KY   + T +  PA++P  +  E++ +A  A + +GC  ++R DF    
Sbjct: 259 AESHCFYSYDAKYIDADGTEIKVPAELPEQVENEIRAIAAKAFRVLGCDSMARVDFFVTA 318

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
             R++   EIN  PG T +S++ ++ A +G S+ E++  +V      
Sbjct: 319 -DRRIVLNEINTIPGFTDMSMYSKVMAVSGVSYPEIINRLVAHGLAR 364


>gi|251799572|ref|YP_003014303.1| D-alanine/D-alanine ligase [Paenibacillus sp. JDR-2]
 gi|247547198|gb|ACT04217.1| D-alanine/D-alanine ligase [Paenibacillus sp. JDR-2]
          Length = 359

 Score =  285 bits (729), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 91/345 (26%), Positives = 155/345 (44%), Gaps = 51/345 (14%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQI-------------------------- 36
           VL GG S E EVSL +      ++ ++ ++   +                          
Sbjct: 7   VLYGGKSVEHEVSLKTAVTVLQSINESRYEAYPVYLTREGLWCTPPGPIAKDELTIERLI 66

Query: 37  ------DVDRSVGLVLAHL----KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
                 D  RS+G +L+ +     P +   +LHG  GEDG VQ +LEL+ +PY  +G+L+
Sbjct: 67  ATPTFPDPARSIGEILSGIMALPGPKVVLPLLHGPNGEDGTVQGLLELVNVPYVGNGVLS 126

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPLKGGS 137
           +AL++DK  SKQV++  G+      +                ++  I  P  +KP   GS
Sbjct: 127 AALTLDKAMSKQVLAQAGINQTEYRVYRYEEWITDEESVLRKAEDSIEYPCYVKPASLGS 186

Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA--VP 195
           S+GI        +   +    ++++  +L+IE+ V G E+   V+G+     +     + 
Sbjct: 187 SIGISRCTNRGELLAGI--REAFSYDKKLVIEREVSGREIQVAVIGNERPLASLPGEFIH 244

Query: 196 KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255
              F+ YE KY     T  +PA +   +   ++ LA  A+QA GC G++R DF  D    
Sbjct: 245 DHIFFDYESKYMDKRLTMQIPANLADGLTPRIRELAVRAYQAHGCEGLARVDFFLDG-EG 303

Query: 256 KVFWLEINVQPGMTPVSIFPEMAAY-AGYSFRELLLWMVEDASCL 299
           +++  EIN  PG T  S++P M     G ++ EL+  ++  A   
Sbjct: 304 QLYLNEINALPGFTNFSMYPVMWERTNGTTYSELIEQLIGHAIAR 348


>gi|294791342|ref|ZP_06756499.1| D-alanine--D-alanine ligase [Scardovia inopinata F0304]
 gi|294457813|gb|EFG26167.1| D-alanine--D-alanine ligase [Scardovia inopinata F0304]
          Length = 385

 Score =  285 bits (729), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 99/376 (26%), Positives = 165/376 (43%), Gaps = 81/376 (21%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +A+L GG + E  +S  S  +   AL+ + F+   I + ++   +   + P         
Sbjct: 9   IAILYGGRADEHPISCISAGSVLRALDTSKFEPVPIGITKNGTWITDGVDPREWNLGSGA 68

Query: 52  ----------------------------------------DLAFNVLHGNFGEDGLVQAI 71
                                                   D  F VLHG +GEDG +Q +
Sbjct: 69  LPAVEETASSRRVVLDPSAGSEGFLVFNRQTGKNESLGHIDAVFPVLHGPYGEDGTIQGL 128

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--------RFTMDSQHL 123
           LE++ IPY   G+ ASA  MDK  +K ++S  G+ V P I ++         F  D + L
Sbjct: 129 LEMMGIPYVGCGVFASAACMDKHYTKVLLSQAGIQVAPGITLDTRSYHRDSHFVADGESL 188

Query: 124 --------ISPPYVIKPLKGGSSLGIIVI--KKDQSI---PLDLLQSSSWNHGDQLLIEQ 170
                   +  P  +KP + GSS G+  +   +D+S+    L      + NH  ++LIEQ
Sbjct: 189 LQAVDRAGLQYPLFVKPSRAGSSFGVTKVDFSQDKSLLMNRLSAAVFEAANHDWRVLIEQ 248

Query: 171 YVDGIELTCGVMGDASLDVTEIAVP---------KSDFYSYELKYSSLNSTHVL-PAKIP 220
            +DG E+ C V+      + E ++P            FY ++ KY    ++HV  PA +P
Sbjct: 249 GIDGREIECAVLAARPGSLPETSLPGEVVLDAPDDDTFYDFDSKYMDSQASHVEVPAHLP 308

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280
             + ++V++ A  A  A+  +G+SR D        +V   EIN  PG TP+S++ +    
Sbjct: 309 QKLLEKVRQTAGQAFLAVDGQGLSRVDTFVTA-DGQVLVNEINTMPGFTPISMYAKAWEA 367

Query: 281 AGYSFRELLLWMVEDA 296
            G S+REL+  +++ A
Sbjct: 368 MGLSYRELISRLIDGA 383


>gi|237708678|ref|ZP_04539159.1| D-alanyl-alanine synthetase A [Bacteroides sp. 9_1_42FAA]
 gi|237724044|ref|ZP_04554525.1| D-alanyl-alanine synthetase A [Bacteroides sp. D4]
 gi|265755352|ref|ZP_06090122.1| D-alanyl-alanine synthetase A [Bacteroides sp. 3_1_33FAA]
 gi|229437504|gb|EEO47581.1| D-alanyl-alanine synthetase A [Bacteroides dorei 5_1_36/D4]
 gi|229457378|gb|EEO63099.1| D-alanyl-alanine synthetase A [Bacteroides sp. 9_1_42FAA]
 gi|263234494|gb|EEZ20084.1| D-alanyl-alanine synthetase A [Bacteroides sp. 3_1_33FAA]
          Length = 324

 Score =  285 bits (729), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 86/322 (26%), Positives = 151/322 (46%), Gaps = 31/322 (9%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40
           +A++ GG SSE  VSL S +   S ++   + +  +++                    D 
Sbjct: 5   IAIVAGGDSSELVVSLRSAQGLYSFIDKERYNLYIVEMEGHRWEVVLPDGSKTPIDRNDF 64

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           S          D A+  +HG  GE+G++Q   +LL IPY+   +L SA++ +K    Q +
Sbjct: 65  SFMENGEKKHFDFAYITIHGTPGENGILQGYFDLLGIPYSSCNVLVSAMTFNKFTCNQYL 124

Query: 101 SSCGVPVCPSILVNRF----TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
              G+ V  S+++ +       +  + I  P  IKP  GGSS G+  +K  + I   +  
Sbjct: 125 KGFGIRVAESLILRKGFEITDEEVINKIGLPCFIKPNAGGSSFGVTKVKTKEDIQPAI-- 182

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGD---ASLDVTEIAVPKSDFYSYELKYSSLNSTH 213
             ++   D+++IE ++ G E+TCG         +      V  ++F+ Y  KY+   S  
Sbjct: 183 EKAFKESDEVMIEAFMRGTEITCGCYKTSDKEVVFPITEVVSANEFFDYGAKYN-GESQE 241

Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273
           + PA++P D  + V+ L    +  +GC G+ R D++      KV  LEIN  PGMT  S 
Sbjct: 242 ITPARLPEDTAERVRLLTSAIYDILGCSGLIRIDYIITE-GEKVNLLEINTTPGMTATSF 300

Query: 274 FPEMAAYAGYSFRELLLWMVED 295
            P+    AG   ++++  ++E+
Sbjct: 301 IPQQVRAAGLDIKDVMTDIIEN 322


>gi|116671060|ref|YP_831993.1| D-alanyl-alanine synthetase A [Arthrobacter sp. FB24]
 gi|190359110|sp|A0JXX3|DDL_ARTS2 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|116611169|gb|ABK03893.1| D-alanine--D-alanine ligase [Arthrobacter sp. FB24]
          Length = 382

 Score =  285 bits (729), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 100/359 (27%), Positives = 158/359 (44%), Gaps = 66/359 (18%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50
           +AVL GG SSE  VS  +      A++   + V  I + ++   VL              
Sbjct: 19  VAVLFGGRSSEHAVSCVTAAGVLGAIDYDKYDVIPIGIAKTGQWVLVSGDTRQWSLSASS 78

Query: 51  ------------------------------------PDLAFNVLHGNFGEDGLVQAILEL 74
                                                D+ F +LHG FGEDG +Q +LEL
Sbjct: 79  LPEVSPSARTVTLAEIGGEHQLIVASPNEVPQELGAVDVVFPLLHGPFGEDGTIQGLLEL 138

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHL------ISP 126
            +  Y  +G+LASA+ MDK   K V  + G+ V P I V       D + +      +  
Sbjct: 139 SDTRYVGAGVLASAVGMDKHYMKVVFEAAGLQVGPYIAVTDRQWLTDPEAIRKRVDRLGY 198

Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186
           P  +KP + GSS+GI  +  D    LD   +++  H  +L+IE  + G E+ C V+    
Sbjct: 199 PVFVKPARAGSSMGISKV--DSLEGLDAAIAAAREHDLKLVIEAGIVGREIECAVLEGRG 256

Query: 187 LDVTEIAVP--------KSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQA 237
            +    ++P        + +FY +  KY   ++  +  PA +P +    V+ LA  A  A
Sbjct: 257 TEPPRTSMPGEIAVAPGEHEFYDFNAKYVEDDAASLSCPADLPDEAIARVRELAAAAFDA 316

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +G  G+SR DF + P   ++   EIN  PG TP S++P+M A +G  + EL+  ++  A
Sbjct: 317 VGAEGLSRVDFFYTP-DGELIINEINTMPGFTPKSMYPQMWAASGLGYAELIDELIYLA 374


>gi|254967036|gb|ACT97554.1| putative D-alanine-D-alanine ligase [uncultured organism]
          Length = 324

 Score =  284 bits (728), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 86/322 (26%), Positives = 151/322 (46%), Gaps = 31/322 (9%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40
           +A++ GG SSE  VSL S +   S ++   + +  +++                    D 
Sbjct: 5   IAIVAGGDSSELVVSLRSAQGLYSFIDKERYNLYIVEMEGHRWEVVLPDGSKTPIDRNDF 64

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           S          D A+  +HG  GE+G++Q   +LL IPY+   +L SA++ +K    Q +
Sbjct: 65  SFMENGEKKHFDFAYITIHGTPGENGILQGYFDLLGIPYSSCNVLVSAMTFNKFTCNQYL 124

Query: 101 SSCGVPVCPSILVNRF----TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
              G+ V  S+++ +       +  + I  P  IKP  GGSS G+  +K  + I   +  
Sbjct: 125 KGFGIRVAESLILRKGFEITDEEVINKIGLPCFIKPNAGGSSFGVTKVKTKEDIQPAI-- 182

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGD---ASLDVTEIAVPKSDFYSYELKYSSLNSTH 213
             ++   D+++IE ++ G E+TCG         +      V  ++F+ Y  KY+   S  
Sbjct: 183 EKAFEESDEVMIEAFMRGTEITCGCYKTSDKEVVFPITEVVSANEFFDYGAKYN-GESQE 241

Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273
           + PA++P D  + V+ L    +  +GC G+ R D++      KV  LEIN  PGMT  S 
Sbjct: 242 ITPARLPEDTAERVRLLTSAIYDILGCSGLIRIDYIITE-GEKVNLLEINTTPGMTATSF 300

Query: 274 FPEMAAYAGYSFRELLLWMVED 295
            P+    AG   ++++  ++E+
Sbjct: 301 IPQQVRAAGLDIKDVMTDIIEN 322


>gi|225627738|ref|ZP_03785775.1| D-alanine--D-alanine ligase [Brucella ceti str. Cudo]
 gi|225617743|gb|EEH14788.1| D-alanine--D-alanine ligase [Brucella ceti str. Cudo]
          Length = 366

 Score =  284 bits (728), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 94/347 (27%), Positives = 165/347 (47%), Gaps = 51/347 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           + VL GG S+E +VS+ S     +AL+ A ++   + V R+   +L              
Sbjct: 21  IVVLFGGRSAEHDVSVLSATNVMNALDPAKYEAVPVFVTRAGQWLLSRFVNGALEKPSSG 80

Query: 47  -----------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                     K D+ F VLHG  GEDG VQ + ++  +P    G
Sbjct: 81  AELCLVPGGCGRAIVVPDAGAPYEADKIDIIFPVLHGLHGEDGAVQGLAQVARVPLAGCG 140

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSL 139
           I  SA ++DK  +K++V+  G+    S+ + R  + +    +  +  P  IKP + GSS+
Sbjct: 141 IPGSANALDKDIAKRLVNEAGLSTAKSVTITREEVPAFSALEQALGLPIFIKPARQGSSV 200

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD--ASLDVT---EIAV 194
           G+  +  +      +  S  + + D+LL E+++   E+ CGV+ D   +L V+   EI  
Sbjct: 201 GVHKVVTEADYQAAM--SDGFTYDDKLLAEEFIQAREVECGVLEDEGGALFVSRAGEIVP 258

Query: 195 PKSD-FYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            +S  FYSY+ KY   + T +  PA++P  +  E++ +A  A + +GC  ++R DF    
Sbjct: 259 AESHCFYSYDAKYIDADGTEIKVPAELPEQVENEIRAIAAKAFRVLGCDSMARVDFFVTA 318

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
             R++   EIN  PG T +S++ ++ A +G S+ E++  +V      
Sbjct: 319 -DRRIVLNEINTIPGFTDMSMYSKVMAVSGVSYPEIINRLVAHGLAR 364


>gi|260909667|ref|ZP_05916362.1| D-alanine-D-alanine ligase [Prevotella sp. oral taxon 472 str.
           F0295]
 gi|260636226|gb|EEX54221.1| D-alanine-D-alanine ligase [Prevotella sp. oral taxon 472 str.
           F0295]
          Length = 392

 Score =  284 bits (728), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 91/328 (27%), Positives = 150/328 (45%), Gaps = 37/328 (11%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40
           +A++ GG SSE EVSL S +   S  +   + V  +D+                    D 
Sbjct: 67  IAIVCGGNSSEHEVSLRSARGLYSFFDKEKYNVYIVDIERMNWKVDLGNGERAIIDKNDF 126

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           S       +  D A+  +HG  GE+G++Q   EL+++PY+ SG+L  AL+ DK      +
Sbjct: 127 SFVHEGEQVFFDYAYITIHGTPGENGIMQGYFELIDMPYSTSGVLVEALTFDKYVLNNYL 186

Query: 101 SSCGVPVCPSILVNRFTM------DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154
              GV V  SILV R           +  +  P  +KP   GSS G+  +K    +   L
Sbjct: 187 RGFGVNVANSILVRRGEEFGIDERAVEAQLGMPCFVKPAADGSSFGVSKVKNIDQLAPAL 246

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLN 210
            ++      D  +IE ++DG E++ G          L  TE+ V  ++F+ Y+ KY+   
Sbjct: 247 RKAL--MEDDSAVIESFLDGTEISVGCYRVKGETKVLPATEV-VSHNEFFDYDAKYN-GQ 302

Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL---SRKVFWLEINVQPG 267
              + PA+I  +  + V       ++ + C GI R D++       + K+  +E+N  PG
Sbjct: 303 VEEITPARIADETARRVAEETARIYEILNCNGIIRIDYILTKEPDGTDKINLIEVNTTPG 362

Query: 268 MTPVSIFPEMAAYAGYSFRELLLWMVED 295
           MTP S  P+    AG   +++L  +VE+
Sbjct: 363 MTPTSFIPQQVRAAGMEMKDVLSEIVEN 390


>gi|15639657|ref|NP_219107.1| D-alanyl-alanine synthetase A [Treponema pallidum subsp. pallidum
           str. Nichols]
 gi|189025895|ref|YP_001933667.1| D-alanyl-alanine synthetase A [Treponema pallidum subsp. pallidum
           SS14]
 gi|6014942|sp|O83676|DDL_TREPA RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|229486020|sp|B2S3Q9|DDL_TREPS RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|3322972|gb|AAC26568.1| D-alanine--D-alanine ligase (ddlA) [Treponema pallidum subsp.
           pallidum str. Nichols]
 gi|189018470|gb|ACD71088.1| D-alanine--D-alanine ligase [Treponema pallidum subsp. pallidum
           SS14]
 gi|291060036|gb|ADD72771.1| D-alanine--D-alanine ligase [Treponema pallidum subsp. pallidum
           str. Chicago]
          Length = 396

 Score =  284 bits (728), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 90/346 (26%), Positives = 164/346 (47%), Gaps = 56/346 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASAL---------------------------------- 26
           + +L GG S+E +VS+ S +  A  L                                  
Sbjct: 4   VTLLYGGRSAEHDVSVRSARFVARTLCLQHTVMLIGITRRGVWYAQPACALEQLCTGTVA 63

Query: 27  ----EDAGFKVSQIDVDRSVGLVLAHLKP---DLAFNVLHGNFGEDGLVQAILELLEIPY 79
               ED   +V  +    + G  +    P   D+ F VLHG++GEDG VQ +LE+L++PY
Sbjct: 64  LSIQEDEKRRVCLVPGGGTAGAFVIAGMPCVTDVVFPVLHGSYGEDGTVQGLLEMLQVPY 123

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVI 130
              G+ ASAL+MDK+++K +  + G+PV P +   +              +  +  P  +
Sbjct: 124 VGCGVCASALAMDKVKAKMLWQAAGLPVLPFVFFRKDAWRMHMQEFVAQLETRLGYPLFV 183

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV- 189
           KP + GSS+G   ++    +   +   +++   + +L+E+YV   E+ C + G+    V 
Sbjct: 184 KPAQAGSSVGASAVQTRAPLIPAI--EAAFQWDEVVLVERYVRAREIECALSGNGPYTVH 241

Query: 190 -TEIAVPKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
                + +  FY YE KY+  +   V + A +    Y+++  LA  A++A+G  G++R D
Sbjct: 242 GAGEVIAQGAFYDYEEKYADASVARVLVTAPLETAQYEQITTLALRAYEALGLTGLARVD 301

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           F     + +V+  E+N  PG T +S+FP++   AG + ++L+  ++
Sbjct: 302 FFLLE-TGEVYVNEVNTMPGFTSISLFPQICQAAGVAPQDLMAQLL 346


>gi|297197149|ref|ZP_06914546.1| D-alanine:D-lactate ligase [Streptomyces sviceus ATCC 29083]
 gi|197716566|gb|EDY60600.1| D-alanine:D-lactate ligase [Streptomyces sviceus ATCC 29083]
          Length = 346

 Score =  284 bits (727), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 90/338 (26%), Positives = 143/338 (42%), Gaps = 45/338 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           + ++ GG S E  VS+ S +  A  L+   ++   + + +     L              
Sbjct: 6   VGIIFGGCSEEHPVSVKSAREVAQNLDVEKYEPFFVGITKGGDWRLCNGPDTDWERGDHR 65

Query: 47  ---------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
                                  +  D+   VLHG  GEDG +Q +LEL  IPY    I 
Sbjct: 66  PAVLSPDRGDRGLLVLDQGRYETITLDVVLPVLHGKLGEDGAIQGLLELSGIPYVGCDIQ 125

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145
           +SAL MDK  +  V SS G+       V          IS P  +KP + G S G+  + 
Sbjct: 126 SSALCMDKSLAYLVASSAGIRTPSHWTVTAGEHIDPDRISWPVFVKPARSGPSFGVTKVS 185

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT----EIAVPKSDFYS 201
           + + +   +   ++  +  ++LIE+ V G E+ C V+G+    +T     IA+    F  
Sbjct: 186 RREELLSAV--ETARQYDSKVLIEEVVVGSEIGCAVLGNEKGLITGQVDHIALSHGFFRI 243

Query: 202 YELKY---SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
           ++       S NS  ++PA IP +    V   A   ++A+GCRG++R D        +V 
Sbjct: 244 HQEDQPETGSDNSVAIVPADIPEESRSLVTEQAKALYRALGCRGLARVDMFLRE-DGEVV 302

Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             E+N  PGMT  S +P M A A     E++  +V  A
Sbjct: 303 LNEVNTFPGMTSYSRYPRMMAAADLPLTEVIDRLVSLA 340


>gi|220912996|ref|YP_002488305.1| D-alanyl-alanine synthetase A [Arthrobacter chlorophenolicus A6]
 gi|254767718|sp|B8HAC4|DDL_ARTCA RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|219859874|gb|ACL40216.1| D-alanine/D-alanine ligase [Arthrobacter chlorophenolicus A6]
          Length = 382

 Score =  284 bits (727), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 103/359 (28%), Positives = 151/359 (42%), Gaps = 66/359 (18%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50
           +AVL GG SSE  VS  +      A+    + V  I + +S   VLA             
Sbjct: 19  VAVLFGGRSSEHAVSCVTAAGVLGAINKDKYDVIPIGIAKSGQWVLAGGDTAQWSLAGKA 78

Query: 51  ------------------------------------PDLAFNVLHGNFGEDGLVQAILEL 74
                                                D+ F +LHG FGEDG +Q +LEL
Sbjct: 79  LPEVAPSEQTVTLAEIGGEHQLIVAAPNEVPQELGTVDVVFPLLHGPFGEDGTIQGLLEL 138

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ--------HLISP 126
            +  Y  +G+LASA+ MDK   K V  S G+ V P + V                  +  
Sbjct: 139 SDTRYVGAGVLASAVGMDKHFMKVVFESAGLHVGPYVAVTDRQWQKDPEAVRKQVDRLGF 198

Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186
           P  +KP + GSS+GI  +  D    LD     +  H  +L+IE  + G E+ C V+    
Sbjct: 199 PVFVKPARAGSSMGISKV--DSLEGLDAAIEEARRHDLKLVIEAGIVGREIECAVLEGRG 256

Query: 187 LDVTEIAVP--------KSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQA 237
            D    ++P          +FY +  KY   ++  +  PA IP +    V+ LA  A  A
Sbjct: 257 TDAPRTSLPGEISVAGGGHEFYDFNAKYVEDDAASLSCPADIPDEAIARVRELAAAAFDA 316

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +G  G+SR DF + P    +   EIN  PG TP S++P+M A +G  + EL+  ++  A
Sbjct: 317 VGAEGLSRVDFFYTP-DGDLIINEINTMPGFTPKSMYPQMWAKSGLGYAELIDELIHLA 374


>gi|160286234|pdb|2YZG|A Chain A, Crystal Structure Of D-Ala:d-Ala Ligase From Thermus
           Thermophilus Hb8
 gi|160286235|pdb|2YZG|B Chain B, Crystal Structure Of D-Ala:d-Ala Ligase From Thermus
           Thermophilus Hb8
 gi|160286236|pdb|2YZG|C Chain C, Crystal Structure Of D-Ala:d-Ala Ligase From Thermus
           Thermophilus Hb8
          Length = 319

 Score =  284 bits (727), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 99/320 (30%), Positives = 158/320 (49%), Gaps = 33/320 (10%)

Query: 3   VLMGGISSEREVSLSSGKACA----------------------SALEDAGFKVSQIDVDR 40
           ++ GG+S E EVSL S +                          AL     K +  + + 
Sbjct: 5   LIAGGVSPEHEVSLLSAEGVLRHIPFPTDLAVIAQDGRWLLGEKALTALEAKAAP-EGEH 63

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
                L+  + D+ F +LHG FGEDG VQ  LELL  PY  +G+ ASAL  DK  SK+V+
Sbjct: 64  PFPPPLSWERYDVVFPLLHGRFGEDGTVQGFLELLGKPYVGAGVAASALCXDKDLSKRVL 123

Query: 101 SSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160
           +  GVPV P + V +          P + +KP   GSS+GI  +++ Q +   L    ++
Sbjct: 124 AQAGVPVVPWVAVRKGEPPVVPFDPP-FFVKPANTGSSVGISRVERFQDLEAALAL--AF 180

Query: 161 NHGDQLLIEQYVDG-IELTCGVMGD---ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216
            + ++ ++E+ +    EL  GV+G+    +  V E+   ++ FY YE KY+   +  ++P
Sbjct: 181 RYDEKAVVEKALSPVRELEVGVLGNVFGEASPVGEVRY-EAPFYDYETKYTPGRAELLIP 239

Query: 217 AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPE 276
           A +     + VQ LA  A++ +G RG +R DF       +++  E+N  PG TP S +P 
Sbjct: 240 APLDPGTQETVQELALKAYKVLGVRGXARVDFFL--AEGELYLNELNTIPGFTPTSXYPR 297

Query: 277 MAAYAGYSFRELLLWMVEDA 296
           +    G ++ ELL  +VE A
Sbjct: 298 LFEAGGVAYPELLRRLVELA 317


>gi|261317898|ref|ZP_05957095.1| D-alanine-D-alanine ligase A [Brucella pinnipedialis B2/94]
 gi|265988927|ref|ZP_06101484.1| D-alanine-D-alanine ligase A [Brucella pinnipedialis M292/94/1]
 gi|261297121|gb|EEY00618.1| D-alanine-D-alanine ligase A [Brucella pinnipedialis B2/94]
 gi|264661124|gb|EEZ31385.1| D-alanine-D-alanine ligase A [Brucella pinnipedialis M292/94/1]
          Length = 360

 Score =  284 bits (727), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 94/347 (27%), Positives = 165/347 (47%), Gaps = 51/347 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           + VL GG S+E +VS+ S     +AL+ A ++   + V R+   +L              
Sbjct: 15  IVVLFGGRSAEHDVSVLSATNVMNALDPAKYEAVPVFVTRAGQWLLSRFVNGALEKPSSG 74

Query: 47  -----------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                     K D+ F VLHG  GEDG VQ + ++  +P    G
Sbjct: 75  AELCLVPGGCGRAIVVPDAGAPYEADKIDIIFPVLHGLHGEDGAVQGLAQVARVPLAGCG 134

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSL 139
           I  SA ++DK  +K++V+  G+    S+ + R  + +    +  +  P  IKP + GSS+
Sbjct: 135 IPGSANALDKDIAKRLVNEAGLSTAKSVTITREEVPAFSALEQALGLPIFIKPARQGSSV 194

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD--ASLDVT---EIAV 194
           G+  +  +      +  S  + + D+LL E+++   E+ CGV+ D   +L V+   EI  
Sbjct: 195 GVHKVVTEADYQAAM--SDGFTYDDKLLAEEFIQAREVECGVLEDEGGALFVSRAGEIVP 252

Query: 195 PKSD-FYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            +S  FYSY+ KY   + T +  PA++P  +  E++ +A  A + +GC  ++R DF    
Sbjct: 253 AESHCFYSYDAKYIDADGTEIKVPAELPEQVENEIRAIAAKAFRVLGCDSMARVDFFVTA 312

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
             R++   EIN  PG T +S++ ++ A +G S+ E++  +V      
Sbjct: 313 -DRRIVLNEINTIPGFTDMSMYSKVMAVSGVSYPEIINRLVAHGLAR 358


>gi|323343929|ref|ZP_08084156.1| D-alanine-D-alanine ligase [Prevotella oralis ATCC 33269]
 gi|323095748|gb|EFZ38322.1| D-alanine-D-alanine ligase [Prevotella oralis ATCC 33269]
          Length = 333

 Score =  284 bits (727), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 90/327 (27%), Positives = 150/327 (45%), Gaps = 35/327 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-----------------VDRSVG 43
           +A++ GG SSE +VSL S +   S  +   + V  +D                 +DR+  
Sbjct: 8   IAIVCGGDSSEHDVSLRSAQGLYSFFDKERYNVYIVDVKGVDWHVNFENGEVASIDRNDF 67

Query: 44  LVLAHLK---PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
             +   K    D A+  +HG  GE+G++Q   EL+ +PY+ SG+L  A++ DK      +
Sbjct: 68  SFVKDGKAVIFDYAYITIHGTPGENGIMQGYFELIHLPYSTSGVLVEAMTFDKYVLNNYL 127

Query: 101 SSCGVPVCPSILVNRFTMDS------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154
            S G+ V PS+L+ R   D       +  I  P  +KP   GSS G+  +K    +   L
Sbjct: 128 RSFGINVAPSLLLRRGEEDKYSEEYIEKTIGMPCFVKPAADGSSFGVSKVKNADQLAPAL 187

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI---AVPKSDFYSYELKYSSLNS 211
               ++   D ++IE +++G E++ G        V       V  ++F+ Y+ KY+    
Sbjct: 188 --RVAFMESDDVMIEAFMEGTEISVGCYKTKKKSVVFPATEVVTTNEFFDYDAKYN-GQV 244

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS---RKVFWLEINVQPGM 268
             + PA+I  +  K+V       +  + C GI R D++         K+  LEIN  PGM
Sbjct: 245 QEITPARISTETAKKVAEETSKIYDILHCNGIIRIDYIITKDDAGNDKINMLEINTTPGM 304

Query: 269 TPVSIFPEMAAYAGYSFRELLLWMVED 295
           T  S  P+    AG   +++L  +VE+
Sbjct: 305 THTSFIPQQVHAAGLDIKDVLTDIVEN 331


>gi|198277497|ref|ZP_03210028.1| hypothetical protein BACPLE_03719 [Bacteroides plebeius DSM 17135]
 gi|198269995|gb|EDY94265.1| hypothetical protein BACPLE_03719 [Bacteroides plebeius DSM 17135]
 gi|254967003|gb|ACT97537.1| putative D-alanyl-alanine synthetase A [uncultured organism]
 gi|254967005|gb|ACT97538.1| putative D-alanyl-alanine synthetase A [uncultured organism]
          Length = 325

 Score =  284 bits (727), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 95/322 (29%), Positives = 156/322 (48%), Gaps = 31/322 (9%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-----------------VDRSVG 43
           +A++ GG SSE  VS+ S +   S ++   + +  ++                 VD++  
Sbjct: 5   IAIVAGGDSSEHGVSMKSAEGIYSFIDQDKYTLYIVELTKARWEAILSDGSRAQVDKNDF 64

Query: 44  LVLAHLK---PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
             + H +   PD A+  +HG  GE+G++Q   ELL IPY+   +L SAL+  K    Q +
Sbjct: 65  SFMDHGQKIIPDFAYITIHGTPGENGILQGYFELLGIPYSTCDVLVSALTFSKFTLNQYL 124

Query: 101 SSCGVPVCPSILVNR----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
              GV V  S+LVN+       D    I  P  IKP   GSS G+  +K  + I   L  
Sbjct: 125 KGFGVRVAESMLVNKRHGISDEDVIAKIGLPCFIKPNASGSSFGVTKVKTKEQIQPAL-- 182

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVM---GDASLDVTEIAVPKSDFYSYELKYSSLNSTH 213
            +++   D ++IE ++DGIEL  G      +  +      V +++F+ Y  KY     T 
Sbjct: 183 EAAFKESDDVMIEAFMDGIELANGCYKTKKNEVVFPITEVVSQNEFFDYNAKYK-GEVTE 241

Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273
           + PA++  ++   VQ+L    +  +GC+GI R D++      K+  LEIN  PGMT  S 
Sbjct: 242 ITPARLSPELTSRVQQLTSAIYDILGCKGIVRVDYIITE-GEKINMLEINTTPGMTATSF 300

Query: 274 FPEMAAYAGYSFRELLLWMVED 295
            P+    AG   ++++  ++ED
Sbjct: 301 IPQQVRAAGLDIKDVMTDIIED 322


>gi|326332503|ref|ZP_08198776.1| D-alanine--D-lactate ligase [Nocardioidaceae bacterium Broad-1]
 gi|325949693|gb|EGD41760.1| D-alanine--D-lactate ligase [Nocardioidaceae bacterium Broad-1]
          Length = 350

 Score =  284 bits (727), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 87/342 (25%), Positives = 149/342 (43%), Gaps = 49/342 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           + ++ GG+  E  VS+ S +  A  L+   ++   I + +S    L              
Sbjct: 6   VGIIFGGVFEEHPVSVKSAQEVARHLDTDRYEPYWIGITKSGDWRLCDGPEASWEDGAHR 65

Query: 47  -------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81
                                      ++ D+   VLHG  GEDG  Q + EL  IPY  
Sbjct: 66  PVVLSPDRSVHGLLVLDQDDHGGSYETIRLDVVLPVLHGKLGEDGAPQGLFELSGIPYVG 125

Query: 82  SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGI 141
             + +SAL MDK  +  VV+  G+P      +         ++  P  +KP + GSS G+
Sbjct: 126 CDVQSSALCMDKSLAYTVVAEAGIPTPTFWTLYPGDEIDPGVLPYPVFVKPARSGSSFGV 185

Query: 142 IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS----LDVTEIAVPKS 197
             +     +  D   +++  + +++LIE+ V   E+ C ++G+ +     +V  +A+   
Sbjct: 186 SKVSSAAEL--DEAIATARQYDEKVLIEEGVVAEEIGCAILGNGADLVTGEVDHVALSHG 243

Query: 198 DFYSYE---LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
            F  ++    +  S N+T ++PA IP +  + V+  A   ++A+GCRG++R D       
Sbjct: 244 FFKIHQEDAPETGSENATFIVPADIPAEAQELVKTEAQRVYRALGCRGLARVDMFL-KAD 302

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             V   E+N  PG+T  S +P M A AG S  ELL   +  A
Sbjct: 303 GTVVLNEVNTLPGLTSYSRYPRMMAAAGISMTELLDRAITLA 344


>gi|195952517|ref|YP_002120807.1| D-alanine/D-alanine ligase [Hydrogenobaculum sp. Y04AAS1]
 gi|195932129|gb|ACG56829.1| D-alanine/D-alanine ligase [Hydrogenobaculum sp. Y04AAS1]
          Length = 288

 Score =  284 bits (727), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 84/293 (28%), Positives = 146/293 (49%), Gaps = 9/293 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+ GG S E+E++L   KA   +L+  G+ V  +++D+ +   L    P+  F + HG
Sbjct: 3   ITVITGGDSLEKEIALKGAKAVEESLKRLGYDVDVLEIDKDLCFKLKQTNPEKVFIIAHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG VQ +L++L IPY  S    SA+ MDK  SKQ+     +            +  
Sbjct: 63  TYGEDGRVQGLLDILGIPYIGSNTKTSAICMDKDFSKQIFEQNHIKTPKWKAYKPKDVID 122

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
             +   P + KP   GSS G+  ++ D+S+         +   D+L++E++++G ++T G
Sbjct: 123 WSI--FPCIAKPASAGSSFGLFKVEDDKSLKEAAQN--IFKIDDKLIVEEFIEGKDMTVG 178

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
                 L+  EI +PK   Y +E KY+   S ++        I K+++ +A         
Sbjct: 179 YFKGFILEPIEI-IPKKGIYDFESKYTKGMSEYIFVE--DESIAKKLKEIASKLVDIFEL 235

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           + ++R DF      + V+ LEIN  PG+T +S+ P     AG SF +++  +V
Sbjct: 236 KDMARIDFRV--KGKDVYTLEINTIPGLTELSLLPMALKKAGISFNKMVEMLV 286


>gi|88704102|ref|ZP_01101817.1| D-alanine--D-alanine ligase [Congregibacter litoralis KT71]
 gi|88701929|gb|EAQ99033.1| D-alanine--D-alanine ligase [Congregibacter litoralis KT71]
          Length = 315

 Score =  284 bits (727), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 95/285 (33%), Positives = 143/285 (50%), Gaps = 6/285 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S ER+VSL+S     + L D G++   +D              D+AFN+ HG
Sbjct: 12  IAVLFGGTSGERKVSLASADTVLTTLRDGGYEPLALDTGEPRWWERLE-DADIAFNIQHG 70

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG+ Q +L  + +  T S +L SAL+MDK+RSKQ+  S G+P     +V+  T  +
Sbjct: 71  VGGEDGVTQGLLASMGVVGTGSDVLGSALAMDKLRSKQLWRSLGLPTANFAMVDAHTDAA 130

Query: 121 QHLISP-PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
             L       IKP   GSSLG+  +            ++ +  G  +L E+++DG E T 
Sbjct: 131 ALLSEWGAAFIKPSAEGSSLGMSRVDSVDGFKAACEAAAVYGEG--ILAEEFIDGPEYTV 188

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
            ++GD +L    I   + +FY YE KY   ++ + +P  +     + + RLA  A  A+G
Sbjct: 189 AILGDRALPPIRIEASR-EFYDYEAKYKGNSTRYHIPCGLSDGEEETLCRLALEAFAALG 247

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
           C    R D + +    +   LE+N  PGMT  S+ P  A  AG S
Sbjct: 248 CSIWGRVDLMRNRR-GEFQLLEVNTVPGMTDHSLVPMAAKAAGMS 291


>gi|304385279|ref|ZP_07367624.1| D-alanine--D-alanine ligase [Pediococcus acidilactici DSM 20284]
 gi|304328486|gb|EFL95707.1| D-alanine--D-alanine ligase [Pediococcus acidilactici DSM 20284]
          Length = 368

 Score =  284 bits (727), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 96/344 (27%), Positives = 164/344 (47%), Gaps = 58/344 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------------------- 38
           +AVL GG S+ER VSLSSG     AL   G + + ID+                      
Sbjct: 20  IAVLAGGKSTERNVSLSSGSKITDALRAKGHEATMIDLFLGYDLQEGQTVEDVFETSNTD 79

Query: 39  ---------------------------DRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAI 71
                                       ++V  +L     D  F  LHG  GE+G VQA+
Sbjct: 80  SDYEIQTDVLTDADIEKLRTDGTVGLFGKNVLEILRAA--DFVFLALHGGDGENGKVQAV 137

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT-MDSQHLISPPYVI 130
           L+L +I YT SG LAS ++MDK  SK+++    +     ++++    +  Q     P V+
Sbjct: 138 LDLNDIKYTGSGTLASGIAMDKAISKEIMLYNDIKTARFVVLHEEDGIHPQLDFGFPVVV 197

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190
           KP  GGSS+G +++  ++ +        ++   D++++E+++ G E + GV+ + ++   
Sbjct: 198 KPNSGGSSVGTMIVHDEEEL--ADSLRDAYRFDDEIIVEEFITGREFSLGVVNEQAMPAI 255

Query: 191 EIAVPKSDFYSYELKYSSLNST-HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
           EI V    +Y YE K+ +  +T  + P  I  +++ E++R+A    + +G     R DFL
Sbjct: 256 EIVV-NDGWYDYEHKFKTGTTTQFITPPDIDEEVHDEMKRVAVKTMKVLGMTNYGRVDFL 314

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            +     V+ +E N  PGMTP+S+ P+ A  AG S+ +L   ++
Sbjct: 315 VNDQG--VYVIEANNLPGMTPLSLLPQEAEAAGISYEDLCESII 356


>gi|256847995|ref|ZP_05553439.1| D-alanine-D-alanine ligase [Lactobacillus coleohominis 101-4-CHN]
 gi|256715055|gb|EEU30032.1| D-alanine-D-alanine ligase [Lactobacillus coleohominis 101-4-CHN]
          Length = 377

 Score =  284 bits (727), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 95/343 (27%), Positives = 159/343 (46%), Gaps = 52/343 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI------------------------ 36
           +A+L GG SSE +VS  S       ++   + V                           
Sbjct: 8   IALLFGGNSSEHDVSKRSAHNIYDGMDKDKYNVKVFMFTKDGILLDNAASQRIFDGEPED 67

Query: 37  ----------DVDRSVGLVLA---HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                     D+D  +  + A       D  F V+HGN GEDG VQ +  LL+ PY  SG
Sbjct: 68  QVVKEAYATMDLDSPLAPLEALRTAGPIDFFFPVIHGNLGEDGTVQGLFRLLKKPYVGSG 127

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVIKPLKGGS 137
           I ASALS DK  +K+++   GV   P +LV     D       ++ +     +KP K GS
Sbjct: 128 ITASALSFDKDYTKRILDLAGVRNTPYVLVTPENRDQYDWQAIENELGTTVFVKPAKQGS 187

Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVT---EIA 193
           S+GI  ++ +Q     L  +  +++  ++L+EQ + +  E+   ++G+     +    + 
Sbjct: 188 SVGIHKVENEQEYQAALDDAFIYDY--KVLVEQAINNPREVEISILGNEKPIASKLGGVR 245

Query: 194 VPKSD-FYSYELKYSSLNS-THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
           VPK D FY YE K+   +     LP  +P  + +E+  +A  A++A+  +G++R DFL D
Sbjct: 246 VPKGDAFYDYENKFVDASGVVFDLPVILPEKLTREITEMALKAYKALDMKGLARIDFLVD 305

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
                 +  E N  PG T +S++P+M + +G  +  L+  ++E
Sbjct: 306 END-VPYLGEPNTLPGFTNISLYPQMWSVSGIDYSTLIDKLIE 347


>gi|17987010|ref|NP_539644.1| D-alanyl-alanine synthetase A [Brucella melitensis bv. 1 str. 16M]
 gi|17982662|gb|AAL51908.1| d-alanine--d-alanine ligase a [Brucella melitensis bv. 1 str. 16M]
          Length = 366

 Score =  284 bits (727), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 94/347 (27%), Positives = 165/347 (47%), Gaps = 51/347 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           + VL GG S+E +VS+ S     +AL+ A ++   + V R+   +L              
Sbjct: 21  IVVLFGGRSAEHDVSVLSATNVMNALDPAKYEAVPVFVTRAGQWLLSRFVNGALEKPSSG 80

Query: 47  -----------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                     K D+ F VLHG  GEDG VQ + ++  +P    G
Sbjct: 81  AELCLVPGGCGRAIVVPDAGAPYEADKIDIIFPVLHGLHGEDGAVQGLAQVARVPLAGCG 140

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSL 139
           I  SA ++DK  +K++V+  G+    S+ + R  + +    +  +  P  IKP + GSS+
Sbjct: 141 IPGSANALDKDIAKRLVNEAGLSTAKSVTITREEVPAFSALEQALGLPIFIKPARQGSSV 200

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD--ASLDVT---EIAV 194
           G+  +  +      +  S  + + D+LL E+++   E+ CGV+ D   +L V+   EI  
Sbjct: 201 GVHKVVTEADYQAAM--SDGFIYDDKLLAEEFIQAREVECGVLEDEGGALFVSRAGEIVP 258

Query: 195 PKSD-FYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            +S  FYSY+ KY   + T +  PA++P  +  E++ +A  A + +GC  ++R DF    
Sbjct: 259 AESHCFYSYDAKYIDADGTEIKVPAELPEQVENEIRAIAAKAFRVLGCDSMARVDFFVTA 318

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
             R++   EIN  PG T +S++ ++ A +G S+ E++  +V      
Sbjct: 319 -DRRIVLNEINTIPGFTDMSMYFKVMAVSGVSYPEIINRLVAHGLAR 364


>gi|261338020|ref|ZP_05965904.1| D-alanine--D-alanine ligase [Bifidobacterium gallicum DSM 20093]
 gi|270277527|gb|EFA23381.1| D-alanine--D-alanine ligase [Bifidobacterium gallicum DSM 20093]
          Length = 389

 Score =  283 bits (726), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 91/376 (24%), Positives = 153/376 (40%), Gaps = 81/376 (21%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +A++ GG + E  +S  S  +   AL+   F+   I + R    ++    P         
Sbjct: 8   VAIMYGGKADEHSISCISTASVLRALDAERFEPVLIGITRDGVWIVDGEDPRAWDLAAGL 67

Query: 52  --------------------------------------DLAFNVLHGNFGEDGLVQAILE 73
                                                 D+ F VLHG  GEDG +Q + E
Sbjct: 68  PSVEQVPGSRPVVLDMSQGGDGFYARNADGTLESLGHIDVVFPVLHGPNGEDGTIQGLFE 127

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------------- 120
           +L +PY   G+LASA SMDK  +K ++ + G+ V   I ++    D+             
Sbjct: 128 MLGVPYVGCGVLASAASMDKHYTKVLLDNAGIAVANGITLDTRAFDADTQFAAQGETLLN 187

Query: 121 ---QHLISPPYVIKPLKGGSSLGIIVIKKDQS-----IPLDLLQSSSWNHGDQLLIEQYV 172
              +  +  P  +KP + GSS G+  + +          L      +  H  ++L+EQ V
Sbjct: 188 MVEEAGLQYPLFVKPSRAGSSFGVTKVDRAGDAVSGAAQLAAAVYEAAQHDWRVLVEQGV 247

Query: 173 DGIELTCGVMGDASLDVTEIAVP-----------KSDFYSYELKYSSLNSTHVL-PAKIP 220
           D  E+ C V+   +    + ++P              FY ++ KY    ++HV  PA +P
Sbjct: 248 DAREIECAVLCPVAGQPVQASLPGEIVLDRRAEGDDQFYDFDSKYMDKQASHVEVPAHLP 307

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280
            D+ + V+  A  A +A+   G+SR D         V   EIN  PG T +S++P+    
Sbjct: 308 EDVLERVRETAIKAFKAVDGMGLSRVDSFVTA-DGDVIVNEINTMPGFTSISMYPKAWEA 366

Query: 281 AGYSFRELLLWMVEDA 296
           +G  + EL+  ++E A
Sbjct: 367 SGLPYGELITTLIEGA 382


>gi|56201414|dbj|BAD72950.1| D-Ala:D-Ala ligase [Enterococcus faecalis]
          Length = 356

 Score =  283 bits (726), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 79/344 (22%), Positives = 150/344 (43%), Gaps = 51/344 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---LAHLKPD----- 52
           + +L G  S E +VS+ S  +  +A+    ++V  + + +    V   L   +P      
Sbjct: 3   IILLYGDRSEEHDVSVLSAYSVLNAIYYKYYQVQLVFISKDGQWVKGPLLSERPQNKEVL 62

Query: 53  -----------------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                        + F VLHG  GEDG +Q  +E + +PY  +G
Sbjct: 63  HLTWAQTPEETGEFSGKRISPSEIYEEEAIVFPVLHGPNGEDGTIQGFMETINMPYVGAG 122

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPLK 134
           +LAS  +MDK+ +K ++ + G+P  P + V R              +  +  P  +KP  
Sbjct: 123 VLASVNAMDKIMTKYLLQTVGIPQVPFVPVLRSDWKGNPKEVFEKCEGSLIYPVFVKPAN 182

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI-- 192
            GSS+GI  ++  + +        ++ +  + ++EQ ++  E+   ++G+  +  T    
Sbjct: 183 MGSSVGISKVENREELQE--ALEEAFRYDARAIVEQGIEAREIEVAILGNEDVRTTLPGE 240

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            V    FY Y+ KY +      +PA +P ++  + Q  A  A+  +   G+SR DF    
Sbjct: 241 VVKDVAFYDYDAKYINNTIEMQIPAHVPEEVAHQAQEYAKKAYIMLDGSGLSRCDFFLTS 300

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              ++F  E+N  PG T  S++P +    G  + +L+  +++ A
Sbjct: 301 K-NELFLNELNTMPGFTDFSMYPLLWENMGLKYSDLIEELIQLA 343


>gi|15420572|gb|AAK97387.1|AF363615_1 D-alanine:D-alanine ligase 2 [Enterococcus gallinarum]
          Length = 343

 Score =  283 bits (726), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 98/340 (28%), Positives = 155/340 (45%), Gaps = 53/340 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------------------- 38
           + VL GG+S ER+VSLSSG   A ALE+ G +   +D+                      
Sbjct: 3   IVVLAGGLSHERDVSLSSGGQIAMALEERGHRALLLDLYQGNNEKTFESAYSIQKQEENP 62

Query: 39  -------DRSVGLVLAH-----------------LKPDLAFNVLHGNFGEDGLVQAILEL 74
                  +      L                   L  D  F  LHG  GE+G +QA  ++
Sbjct: 63  YDYFVVENEPDIEKLIQKNSNQKNLIGKNVVELCLNADFCFIALHGGIGENGKLQAFFDI 122

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLK 134
             I Y+ S    S L+MDK  +KQ++    +P     L   +    +   S P V+KP+ 
Sbjct: 123 YGIRYSGSHYKGSLLAMDKDIAKQLMKLNDIPTPKWQL---WEQGQEVYYSTPCVVKPID 179

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194
            GSS+G+ +++  +     L ++    +  +++IEQ ++G E + GV+GD  L   EI +
Sbjct: 180 NGSSIGVEIVENKEQFFKALKKAE--KYNSKVMIEQKIEGREFSVGVLGDNVLPAIEI-I 236

Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
           P+  FY+YE KY    +  + PA I  D+   +  +  L ++ +G    SR D++     
Sbjct: 237 PQQGFYNYENKYQKGATEEITPADISSDLATRLSEMTVLVNKVLGLSIYSRVDYIVTK-E 295

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             ++ +E N  PGMTP S+ P+ A   G SF EL   +VE
Sbjct: 296 LDIYCIEANSLPGMTPTSLLPQEAEAIGISFSELCETIVE 335


>gi|269792853|ref|YP_003317757.1| D-alanine/D-alanine ligase [Thermanaerovibrio acidaminovorans DSM
           6589]
 gi|269100488|gb|ACZ19475.1| D-alanine/D-alanine ligase [Thermanaerovibrio acidaminovorans DSM
           6589]
          Length = 316

 Score =  283 bits (726), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 105/308 (34%), Positives = 158/308 (51%), Gaps = 15/308 (4%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK--PDLAFNVLHG 60
           V  GG S EREVSL SG+A   AL   G+ V  +D D  + +V   L    DL F  LHG
Sbjct: 5   VAYGGDSPEREVSLRSGEAVKEALSSLGWTVEGLDADSPLRVVERALSGAFDLVFVALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG +Q +L+   IPYT     A    MDK  ++ V+ + GV V   I  +  +MD 
Sbjct: 65  GWGEDGTLQCLLDTHRIPYTGPRWGACMACMDKEITRGVLLARGVRVPEGIPFD-GSMDQ 123

Query: 121 QHLISP-----PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175
             L+         V+KP + GS++GI ++  D    LD     ++ +  +L++E++++G 
Sbjct: 124 GVLLELLRRWGRLVVKPCRCGSTVGIGIV--DHPSRLDRALDEAFRYDRRLVVERFIEGR 181

Query: 176 ELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           ELT  V     G  +L   EI  P+S FY Y  KY+   + ++ PA +     + V R A
Sbjct: 182 ELTVAVFDTPEGPKALPTVEIR-PRSGFYDYSSKYTKGMTEYLCPAPLSEQEAEAVARAA 240

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A++A+GC   SR D   +  + +   LE+N  PGMT  S+ P+ A   G+ F E+L  
Sbjct: 241 VEAYRAMGCSVYSRVDVRLEEGTGEPRVLEVNTAPGMTSTSLVPKAANAFGWDFPEMLRR 300

Query: 292 MVEDASCL 299
           + E +  L
Sbjct: 301 ICEASLAL 308


>gi|23502147|ref|NP_698274.1| D-alanyl-alanine synthetase A [Brucella suis 1330]
 gi|161619222|ref|YP_001593109.1| D-alanine--D-alanine ligase [Brucella canis ATCC 23365]
 gi|254704548|ref|ZP_05166376.1| D-alanine--D-alanine ligase [Brucella suis bv. 3 str. 686]
 gi|260566209|ref|ZP_05836679.1| D-alanine-D-alanine ligase A [Brucella suis bv. 4 str. 40]
 gi|261755232|ref|ZP_05998941.1| D-alanine-D-alanine ligase A [Brucella suis bv. 3 str. 686]
 gi|38257340|sp|Q8G044|DDLA_BRUSU RecName: Full=D-alanine--D-alanine ligase A; AltName:
           Full=D-Ala-D-Ala ligase A; AltName: Full=D-alanylalanine
           synthetase A
 gi|23348110|gb|AAN30189.1| D-alanine--D-alanine ligase A [Brucella suis 1330]
 gi|161336033|gb|ABX62338.1| D-alanine--D-alanine ligase [Brucella canis ATCC 23365]
 gi|260155727|gb|EEW90807.1| D-alanine-D-alanine ligase A [Brucella suis bv. 4 str. 40]
 gi|261744985|gb|EEY32911.1| D-alanine-D-alanine ligase A [Brucella suis bv. 3 str. 686]
          Length = 353

 Score =  283 bits (726), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 94/347 (27%), Positives = 165/347 (47%), Gaps = 51/347 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           + VL GG S+E +VS+ S     +AL+ A ++   + V R+   +L              
Sbjct: 8   IVVLFGGRSAEHDVSVLSATNVMNALDPAKYEAVPVFVTRAGQWLLSRFVNGALEKPSSG 67

Query: 47  -----------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                     K D+ F VLHG  GEDG VQ + ++  +P    G
Sbjct: 68  AELCLVPGGCGRAIVVPDAGAPYEADKIDIIFPVLHGLHGEDGAVQGLAQVARVPLAGCG 127

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSL 139
           I  SA ++DK  +K++V+  G+    S+ + R  + +    +  +  P  IKP + GSS+
Sbjct: 128 IPGSANALDKDIAKRLVNEAGLSTAKSVTITREEVPAFSALEQALGLPIFIKPARQGSSV 187

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD--ASLDVT---EIAV 194
           G+  +  +      +  S  + + D+LL E+++   E+ CGV+ D   +L V+   EI  
Sbjct: 188 GVHKVVTEADYQAAM--SDGFTYDDKLLAEEFIQAREVECGVLEDEGGALFVSRAGEIVP 245

Query: 195 PKSD-FYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            +S  FYSY+ KY   + T +  PA++P  +  E++ +A  A + +GC  ++R DF    
Sbjct: 246 AESHCFYSYDAKYIDADGTEIKVPAELPEQVENEIRAIATRAFRVLGCDSMARVDFFVTA 305

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
             R++   EIN  PG T +S++ ++ A +G S+ E++  +V      
Sbjct: 306 -DRRIVLNEINTIPGFTDMSMYSKVMAVSGVSYPEIINRLVAHGLAR 351


>gi|254702007|ref|ZP_05163835.1| D-alanine--D-alanine ligase A [Brucella suis bv. 5 str. 513]
 gi|254706556|ref|ZP_05168384.1| D-alanine--D-alanine ligase A [Brucella pinnipedialis M163/99/10]
 gi|254714330|ref|ZP_05176141.1| D-alanine--D-alanine ligase A [Brucella ceti M644/93/1]
 gi|254717229|ref|ZP_05179040.1| D-alanine--D-alanine ligase A [Brucella ceti M13/05/1]
 gi|256061348|ref|ZP_05451492.1| D-alanine--D-alanine ligase A [Brucella neotomae 5K33]
 gi|256160007|ref|ZP_05457716.1| D-alanine--D-alanine ligase A [Brucella ceti M490/95/1]
 gi|256255228|ref|ZP_05460764.1| D-alanine--D-alanine ligase A [Brucella ceti B1/94]
 gi|260168962|ref|ZP_05755773.1| D-alanyl-alanine synthetase A [Brucella sp. F5/99]
 gi|261219047|ref|ZP_05933328.1| D-alanine-D-alanine ligase A [Brucella ceti M13/05/1]
 gi|261222425|ref|ZP_05936706.1| D-alanine-D-alanine ligase A [Brucella ceti B1/94]
 gi|261314015|ref|ZP_05953212.1| D-alanine-D-alanine ligase A [Brucella pinnipedialis M163/99/10]
 gi|261322107|ref|ZP_05961304.1| D-alanine-D-alanine ligase A [Brucella ceti M644/93/1]
 gi|261325350|ref|ZP_05964547.1| D-alanine-D-alanine ligase A [Brucella neotomae 5K33]
 gi|261752574|ref|ZP_05996283.1| D-alanine-D-alanine ligase A [Brucella suis bv. 5 str. 513]
 gi|261758455|ref|ZP_06002164.1| D-alanine-D-alanine ligase/VANA/B/C [Brucella sp. F5/99]
 gi|265998392|ref|ZP_06110949.1| D-alanine-D-alanine ligase A [Brucella ceti M490/95/1]
 gi|260921009|gb|EEX87662.1| D-alanine-D-alanine ligase A [Brucella ceti B1/94]
 gi|260924136|gb|EEX90704.1| D-alanine-D-alanine ligase A [Brucella ceti M13/05/1]
 gi|261294797|gb|EEX98293.1| D-alanine-D-alanine ligase A [Brucella ceti M644/93/1]
 gi|261301330|gb|EEY04827.1| D-alanine-D-alanine ligase A [Brucella neotomae 5K33]
 gi|261303041|gb|EEY06538.1| D-alanine-D-alanine ligase A [Brucella pinnipedialis M163/99/10]
 gi|261738439|gb|EEY26435.1| D-alanine-D-alanine ligase/VANA/B/C [Brucella sp. F5/99]
 gi|261742327|gb|EEY30253.1| D-alanine-D-alanine ligase A [Brucella suis bv. 5 str. 513]
 gi|262552860|gb|EEZ08850.1| D-alanine-D-alanine ligase A [Brucella ceti M490/95/1]
          Length = 353

 Score =  283 bits (726), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 94/347 (27%), Positives = 165/347 (47%), Gaps = 51/347 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           + VL GG S+E +VS+ S     +AL+ A ++   + V R+   +L              
Sbjct: 8   IVVLFGGRSAEHDVSVLSATNVMNALDPAKYEAVPVFVTRAGQWLLSRFVNGALEKPSSG 67

Query: 47  -----------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                     K D+ F VLHG  GEDG VQ + ++  +P    G
Sbjct: 68  AELCLVPGGCGRAIVVPDAGAPYEADKIDIIFPVLHGLHGEDGAVQGLAQVARVPLAGCG 127

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSL 139
           I  SA ++DK  +K++V+  G+    S+ + R  + +    +  +  P  IKP + GSS+
Sbjct: 128 IPGSANALDKDIAKRLVNEAGLSTAKSVTITREEVPAFSALEQALGLPIFIKPARQGSSV 187

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD--ASLDVT---EIAV 194
           G+  +  +      +  S  + + D+LL E+++   E+ CGV+ D   +L V+   EI  
Sbjct: 188 GVHKVVTEADYQAAM--SDGFTYDDKLLAEEFIQAREVECGVLEDEGGALFVSRAGEIVP 245

Query: 195 PKSD-FYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            +S  FYSY+ KY   + T +  PA++P  +  E++ +A  A + +GC  ++R DF    
Sbjct: 246 AESHCFYSYDAKYIDADGTEIKVPAELPEQVENEIRAIAAKAFRVLGCDSMARVDFFVTA 305

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
             R++   EIN  PG T +S++ ++ A +G S+ E++  +V      
Sbjct: 306 -DRRIVLNEINTIPGFTDMSMYSKVMAVSGVSYPEIINRLVAHGLAR 351


>gi|27378516|ref|NP_770045.1| D-alanyl-alanine synthetase A [Bradyrhizobium japonicum USDA 110]
 gi|39931121|sp|Q89PS5|DDLB_BRAJA RecName: Full=D-alanine--D-alanine ligase B; AltName:
           Full=D-Ala-D-Ala ligase B; AltName: Full=D-alanylalanine
           synthetase B
 gi|27351664|dbj|BAC48670.1| D-alanine--D-alanine ligase [Bradyrhizobium japonicum USDA 110]
          Length = 376

 Score =  283 bits (726), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 88/354 (24%), Positives = 152/354 (42%), Gaps = 59/354 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           + +L GG S+E EVS +S      AL    + V  I + R                    
Sbjct: 17  VGLLFGGRSAEHEVSRASAANILRALNSDRYDVYLIGISRDGRWFACDSGNGAGTGSTAL 76

Query: 47  ----------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIP 78
                                            D+AF +LHG  GEDG VQ  LEL ++ 
Sbjct: 77  TISDEAPEIGLVPGGRGRLVHCDGPTGSDAGSIDVAFPILHGPNGEDGTVQGALELADVS 136

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN-----RFTMDSQHLISPPYVIKPL 133
           +  S +  SA++MDK  SK+++   G+PV P +         +      L +P   +KP 
Sbjct: 137 FVGSSVTGSAVAMDKEVSKRLMRDAGLPVVPFLTTTASSRIEYAAAVAALGTPDLFVKPA 196

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDV--- 189
             GSS+G+   + ++        + ++ +  ++L+EQ ++G  E+ C V+ +++ D+   
Sbjct: 197 NLGSSVGVSRARSEEEF--AASCALAFRYDRKILVEQALNGAREIECSVLEESTGDIRAS 254

Query: 190 ---TEIAVPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
                +   +  FYSY+ KY  +  +   +PA +PL   + +Q LA      + C G++R
Sbjct: 255 GLGEIVRASEHGFYSYQAKYIDADGAALHIPADLPLLQARRLQELAVEVFNVLCCEGMAR 314

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
            DF       +VF  E N  PG T  S++P++   +G S  +L+  ++  A   
Sbjct: 315 VDFFV--QGDEVFVNEANTLPGFTSSSMYPKLWEASGLSQTDLMDKLIAHAFAR 366


>gi|254966997|gb|ACT97534.1| putative D-alanine-D-alanine ligase [uncultured organism]
          Length = 350

 Score =  283 bits (726), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 98/351 (27%), Positives = 161/351 (45%), Gaps = 55/351 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------------------- 38
           + VL GG+S+ER+VSLSS       L + G     +DV                      
Sbjct: 3   IIVLAGGLSTERDVSLSSAAGICRTLVEKGHDAFLLDVFMGLENAPENLEDVFTLPDHGL 62

Query: 39  --------DRSVGLVLAHLKPD------------------LAFNVLHGNFGEDGLVQAIL 72
                   +      +   +PD                  + F  LHG  GE+G +QA  
Sbjct: 63  EIVKNISTEEPDLEAVKASRPDQSDCFFGPNVIELCRLADITFLGLHGGEGENGKLQASF 122

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---ISPPYV 129
           +LL+I YT    L  A++M K  +KQ+    GV       + + + D  +    ++ P V
Sbjct: 123 DLLDIKYTGPDSLGCAVAMHKGVAKQIFLESGVDTPGGGTIYKNSEDQSYQSLGLTLPVV 182

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           +KP  GGSS+G+ ++  D+     L +  S+++ D+L++E Y+ G E  CG++   +L  
Sbjct: 183 VKPCSGGSSIGVYIVNTDEEYAEALKK--SFHYEDELVVEPYIKGREFACGIIDGTALPP 240

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
            EI +PK+ F+ Y  KY    ++ V PA IP ++ + ++ L   A  A+     SR+DFL
Sbjct: 241 IEI-IPKTGFFDYANKYQDGATSEVCPADIPEEVAERMKELTVKAFNALKLNVYSRADFL 299

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
            D     +F LE+N  PGMT  S+ P+ A   G  + +L   +++ +   R
Sbjct: 300 LDA-DGNLFCLEMNTLPGMTSASLLPKEAKVYGIEYGDLCELIIKKSMEAR 349


>gi|332653072|ref|ZP_08418817.1| D-alanine--D-alanine ligase [Ruminococcaceae bacterium D16]
 gi|332518218|gb|EGJ47821.1| D-alanine--D-alanine ligase [Ruminococcaceae bacterium D16]
          Length = 349

 Score =  283 bits (726), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 110/348 (31%), Positives = 163/348 (46%), Gaps = 53/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-------VDRSVGLVLAHL---- 49
           + VL GG+S ER VSLSSG     AL   G KV+ +D        DR+V    A +    
Sbjct: 3   IVVLAGGLSPERNVSLSSGAMVCEALRSKGHKVALMDLFFGVEGTDRTVDPFEAPIPQAF 62

Query: 50  ----------------------------------KPDLAFNVLHGNFGEDGLVQAILELL 75
                                             + D+ +  LHG  GEDG +QA L+LL
Sbjct: 63  KKVSPEAPDLVQVRASRKDTSPSAIGQGVLELCAQADVVYLALHGACGEDGRIQATLDLL 122

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI---SPPYVIKP 132
            +PYT SG L SA++MDK  +K++V +  V       V     + + L+     P V+KP
Sbjct: 123 GVPYTGSGCLGSAIAMDKDMTKRLV-AHKVRTPSWCTVTVTEENLEQLMEETKLPVVVKP 181

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192
           +  GSS+G+ +      +   L +S     G + ++EQYV G E+   V+   +L   EI
Sbjct: 182 IASGSSIGVTIAHTKDDLRRGLEESIRL--GGRTVLEQYVKGREIQVAVLNGKALPSIEI 239

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            +P++DFY Y  KY    +  V PA+IP +  K+V   A    + +G    SR+DF+   
Sbjct: 240 -IPQADFYDYANKYQPGAAREVCPAEIPPEWEKKVGDAAVAVFEELGLSVYSRADFIVTE 298

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
              + ++LEIN  PGMTP S+ P+ AA  G  +  L   +V  +   R
Sbjct: 299 -DGEAYFLEINTLPGMTPTSLVPQEAAAVGMDYATLCETIVASSLKAR 345


>gi|283783672|ref|YP_003374426.1| D-ala D-ala ligase N-terminal domain protein [Gardnerella vaginalis
           409-05]
 gi|283441575|gb|ADB14041.1| D-ala D-ala ligase N-terminal domain protein [Gardnerella vaginalis
           409-05]
          Length = 380

 Score =  283 bits (726), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 91/372 (24%), Positives = 155/372 (41%), Gaps = 79/372 (21%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +  L GG + E  +S  S     SA+++  F + +I + +    ++    P         
Sbjct: 6   VVFLYGGKADEHSISCISAAGVLSAVDENRFDIVRIAITKQGEWIVGGEDPRNFHMEEGE 65

Query: 52  ---------------------------------------DLAFNVLHGNFGEDGLVQAIL 72
                                                  D  F VLHG  GEDG +Q +L
Sbjct: 66  LPVITKTAGTRDVVLDPAKGADGFLARENDGTLTSLGHIDAVFPVLHGPNGEDGTLQGLL 125

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV----------NRFTMDSQH 122
           E++++PY   G+LASA  MDK  +KQ+  + G+ V P I +          NRF   ++ 
Sbjct: 126 EMMQVPYVGCGVLASAACMDKYYAKQLFKAAGIDVAPGIALDARKFASDAENRFDAYAEE 185

Query: 123 L--------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
           +        +  P  +KP + GSS G+  ++   +  L      +  H  ++L+EQ +D 
Sbjct: 186 ILAQVEAAKLEYPLFVKPSRAGSSFGVTKVESRDAKALAEAIFEASEHDWRVLVEQGIDA 245

Query: 175 IELTCGVM---GDASLDVTEI--------AVPKSDFYSYELKYSSLNSTHVL-PAKIPLD 222
            E+ C V+          +             +  FY ++ KY    ++HV  PA +P +
Sbjct: 246 REIECAVLAARDGEEPKASWPGEVVLDKREAGEDQFYDFDSKYMDSAASHVEVPANLPAE 305

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAG 282
             + V++ A  A +A   RG+SR D        +V   EIN  PG TP+S++P+     G
Sbjct: 306 TLERVRKTALAAFKAADGRGLSRVDSFVTK-DGRVILNEINTMPGFTPISMYPKAWEATG 364

Query: 283 YSFRELLLWMVE 294
            S+ +L+  ++E
Sbjct: 365 ISYSDLITKLIE 376


>gi|237815687|ref|ZP_04594684.1| D-alanine--D-alanine ligase [Brucella abortus str. 2308 A]
 gi|237788985|gb|EEP63196.1| D-alanine--D-alanine ligase [Brucella abortus str. 2308 A]
          Length = 366

 Score =  283 bits (725), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 94/347 (27%), Positives = 165/347 (47%), Gaps = 51/347 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           + VL GG S+E +VS+ S     +AL+ A ++   + V R+   +L              
Sbjct: 21  IVVLFGGRSAEHDVSVLSATNVMNALDPAKYEAVPVFVTRAGQWLLSRFVNGALEKPSSG 80

Query: 47  -----------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                     K D+ F VLHG  GEDG VQ + ++  +P    G
Sbjct: 81  AELCLVPGGCGRAIVVPDAGAPYEADKIDIIFPVLHGLHGEDGAVQGLAQVARVPLAGCG 140

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSL 139
           I  SA ++DK  +K++V+  G+    S+ + R  + +    +  +  P  IKP + GSS+
Sbjct: 141 IPGSANALDKDIAKRLVNEAGLSTAKSVTITREEVPAFSALEQALGLPIFIKPARQGSSV 200

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD--ASLDVT---EIAV 194
           G+  +  +      +  S  + + D+LL E+++   E+ CGV+ D   +L V+   EI  
Sbjct: 201 GVHKVVTEADYQAAM--SDGFIYDDKLLAEEFIQAREVECGVLEDEGGALFVSRAGEIVP 258

Query: 195 PKSD-FYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            +S  FYSY+ KY   + T +  PA++P  +  E++ +A  A + +GC  ++R DF    
Sbjct: 259 AESHCFYSYDAKYIDADGTEIKVPAELPEQVENEIRAIAAKAFRVLGCDSMARVDFFVTA 318

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
             R++   EIN  PG T +S++ ++ A +G S+ E++  +V      
Sbjct: 319 -DRRIVLNEINTIPGFTDMSMYSKVMAVSGVSYPEIINRLVAHGLAR 364


>gi|312868929|ref|ZP_07729110.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus oris
           PB013-T2-3]
 gi|311095547|gb|EFQ53810.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus oris
           PB013-T2-3]
          Length = 377

 Score =  283 bits (725), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 95/343 (27%), Positives = 163/343 (47%), Gaps = 52/343 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI------------------------ 36
           +A+L GG SSE +VS  S      A++   + VS                          
Sbjct: 7   VALLFGGNSSEHDVSKRSAHNIYDAMDKDKYDVSLFMFTKDGILLDNAYSQRIFDGEPED 66

Query: 37  ----------DVDRSVGLVLAHLK---PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                     D+DR +  ++A  +    D  + V+HGN GEDG +Q + +LL+ PY  SG
Sbjct: 67  QVVADAYQHMDLDRPLAPIMALNELEAVDFFYPVIHGNLGEDGTIQGLFKLLKKPYVGSG 126

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVIKPLKGGS 137
           I ASALS DK  +K++++  G+   P +L+             +  +     IKP + GS
Sbjct: 127 ISASALSFDKDLTKKMLNEAGIRNTPYVLLTPENQAEYSWGRLEEELGNLIFIKPARQGS 186

Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVT---EIA 193
           S+GI  +   +     L    ++ +  ++L E+ +D   E+   ++G+     +    + 
Sbjct: 187 SVGIHRVTNAEEYAAALKD--AFKYDFKVLAEKGLDRPQEIEISILGNEHPVASKLGAVR 244

Query: 194 VPKSD-FYSYELKYSSLNS-THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
           VP+SD FY YE K+   +     LP K+P  +  E+  +A  A++ +G +G+SR DFL D
Sbjct: 245 VPESDPFYDYENKFVDASGVVFELPVKLPQYLTDEITEMALKAYRVLGMKGLSRIDFLVD 304

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             +   +  E N  PG T +S++P+M   +G S+ +L+  ++E
Sbjct: 305 -SNNIPYLSEPNTLPGFTNISLYPQMWEVSGISYSDLIDRLIE 346


>gi|225873801|ref|YP_002755260.1| D-alanine--D-alanine ligase [Acidobacterium capsulatum ATCC 51196]
 gi|225792586|gb|ACO32676.1| D-alanine--D-alanine ligase [Acidobacterium capsulatum ATCC 51196]
          Length = 400

 Score =  283 bits (725), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 83/271 (30%), Positives = 144/271 (53%), Gaps = 19/271 (7%)

Query: 47  AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP 106
             L+ D+ F VLHG FGEDG +Q +LEL  I Y  SG+L SA  MDK   K++ +S  +P
Sbjct: 122 QALQLDIIFPVLHGTFGEDGTIQGLLELAGIAYVGSGVLGSATGMDKDIMKRLFASAKLP 181

Query: 107 VCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
           +   +   R   +          +  +  P  +KP   GSS+GI   +  + +   +  +
Sbjct: 182 ITKHVTFLRPEWEKNPRKITTQIEAALKYPVFVKPANLGSSVGISKARDRKELKAAIELA 241

Query: 158 SSWNHGDQLLIEQYVDG-----IELTCGVMGDASLDVTEIA--VPKSDFYSYELKYSSLN 210
           + ++   ++++EQ V G      EL   V+G+ + + + +   VP  +FY YE KY S  
Sbjct: 242 AGFDR--KIVVEQGVGGKRGKARELEVAVLGNNAPEASVVGEIVPGKEFYDYEAKYLSEG 299

Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS-RKVFWLEINVQPGMT 269
           S  ++PAK+     K+++ +A  A +A  C G++R DFL +P +  +++  EIN  PG T
Sbjct: 300 SVPIIPAKLTKAQSKQIREMAVAAFRACDCAGLARVDFLMEPGTSGRIYLNEINTLPGFT 359

Query: 270 PVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
            +S++P++   +G  + +L+  ++E A   R
Sbjct: 360 SISMYPKLWEASGLPYSKLIDRLIELARERR 390



 Score = 68.2 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 24/48 (50%)

Query: 1  MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH 48
          + +L GG S E EVSL S  +   A++   ++V  I + +    V A 
Sbjct: 6  IGILFGGRSGEHEVSLLSAASILKAIDRKKYEVVPIGITKQGRWVTAD 53


>gi|254710334|ref|ZP_05172145.1| D-alanine--D-alanine ligase A [Brucella pinnipedialis B2/94]
 gi|256031828|ref|ZP_05445442.1| D-alanine--D-alanine ligase A [Brucella pinnipedialis M292/94/1]
          Length = 348

 Score =  283 bits (725), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 94/347 (27%), Positives = 165/347 (47%), Gaps = 51/347 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           + VL GG S+E +VS+ S     +AL+ A ++   + V R+   +L              
Sbjct: 3   IVVLFGGRSAEHDVSVLSATNVMNALDPAKYEAVPVFVTRAGQWLLSRFVNGALEKPSSG 62

Query: 47  -----------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                     K D+ F VLHG  GEDG VQ + ++  +P    G
Sbjct: 63  AELCLVPGGCGRAIVVPDAGAPYEADKIDIIFPVLHGLHGEDGAVQGLAQVARVPLAGCG 122

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSL 139
           I  SA ++DK  +K++V+  G+    S+ + R  + +    +  +  P  IKP + GSS+
Sbjct: 123 IPGSANALDKDIAKRLVNEAGLSTAKSVTITREEVPAFSALEQALGLPIFIKPARQGSSV 182

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD--ASLDVT---EIAV 194
           G+  +  +      +  S  + + D+LL E+++   E+ CGV+ D   +L V+   EI  
Sbjct: 183 GVHKVVTEADYQAAM--SDGFTYDDKLLAEEFIQAREVECGVLEDEGGALFVSRAGEIVP 240

Query: 195 PKSD-FYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            +S  FYSY+ KY   + T +  PA++P  +  E++ +A  A + +GC  ++R DF    
Sbjct: 241 AESHCFYSYDAKYIDADGTEIKVPAELPEQVENEIRAIAAKAFRVLGCDSMARVDFFVTA 300

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
             R++   EIN  PG T +S++ ++ A +G S+ E++  +V      
Sbjct: 301 -DRRIVLNEINTIPGFTDMSMYSKVMAVSGVSYPEIINRLVAHGLAR 346


>gi|259503673|ref|ZP_05746575.1| D-alanine-D-alanine ligase A [Lactobacillus antri DSM 16041]
 gi|259168392|gb|EEW52887.1| D-alanine-D-alanine ligase A [Lactobacillus antri DSM 16041]
          Length = 377

 Score =  283 bits (725), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 96/343 (27%), Positives = 162/343 (47%), Gaps = 52/343 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI------------------------ 36
           +A+L GG SSE +VS  S      A++   + VS                          
Sbjct: 7   VALLFGGNSSEHDVSKRSAHNIYDAMDKDKYDVSLFMFTKDGILLDNAYSQRIFDGEPED 66

Query: 37  ----------DVDRSVGLVLAHLK---PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                     D+DR +  ++A  +    D  + V+HGN GEDG VQ + +LL+ PY  SG
Sbjct: 67  QVVADAYQHMDLDRPLAPIMALNELEAIDFFYPVIHGNLGEDGTVQGLFKLLKKPYVGSG 126

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVIKPLKGGS 137
           I ASALS DK  +K++++  G+   P +L+             +  +     IKP + GS
Sbjct: 127 ISASALSFDKDLTKKMLNEAGIRNTPYVLLTPENQAEYSWGRLEEELGNLIFIKPARQGS 186

Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVT---EIA 193
           S+GI  +   +     L    ++ +  ++L E+ +D   E+   ++G+     +    + 
Sbjct: 187 SVGIHRVTNAEEYAAALKD--AFKYDFKVLAEKGLDRPQEIEISILGNEHPVASKLGAVR 244

Query: 194 VPKSD-FYSYELKYSSLNS-THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
           VPK D FY YE K+   +     LP K+P  +  E+  +A  A++ +G +G+SR DFL D
Sbjct: 245 VPKDDPFYDYENKFVDASGVVFELPVKLPQYLTDEITEMALKAYRVLGMKGLSRIDFLVD 304

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             +   +  E N  PG T +S++P+M   +G S+ +L+  ++E
Sbjct: 305 -SNNIPYLSEPNTLPGFTNISLYPQMWEVSGISYSDLIDRLIE 346


>gi|224536386|ref|ZP_03676925.1| hypothetical protein BACCELL_01260 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224521999|gb|EEF91104.1| hypothetical protein BACCELL_01260 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 324

 Score =  283 bits (725), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 89/322 (27%), Positives = 157/322 (48%), Gaps = 31/322 (9%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40
           +A++ GG +SE +VSL S +   S ++   + +  +++                    D 
Sbjct: 5   IAIVCGGDTSEFQVSLRSAQGIYSFIDKEKYTLYIVEMHGLDWHVQLPDGGKAPIDRNDF 64

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           S  +    +  D A+  +HG  GEDG +Q   +LL IPY+  G+LA+AL+ DK    Q +
Sbjct: 65  SFQMNGRKVTFDFAYITIHGTPGEDGRLQGYFDLLHIPYSCCGVLAAALTYDKFACNQYL 124

Query: 101 SSCGVPVCPSILVNR----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
              GV +  S+++ +       D    I  P  IKP  GGSS G+  +K  + I   +++
Sbjct: 125 KVFGVRIAESLVLRQGQSISDEDVIEKIGLPCFIKPSLGGSSFGVTKVKTKEQIQPAIVK 184

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV---TEIAVPKSDFYSYELKYSSLNSTH 213
             +++   ++LIE Y++G E+TCG        V       V +++F+ Y+ KY+    + 
Sbjct: 185 --AFDEAQEVLIEAYMEGTEVTCGCYKTKEKSVVFPITEVVTENEFFDYDAKYN-GQVSE 241

Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273
           + PA++  D+   +Q L    +  +G  GI R D++      KV  LE+N  PGMT  S 
Sbjct: 242 ITPARLSDDLTHRIQTLTSAIYDILGASGIIRVDYIITA-GDKVNLLEVNTTPGMTATSF 300

Query: 274 FPEMAAYAGYSFRELLLWMVED 295
            P+    AG   ++++  ++E+
Sbjct: 301 IPQQVRAAGLDIKDVMTDIIEN 322


>gi|296271531|ref|YP_003654163.1| D-alanine/D-alanine ligase [Thermobispora bispora DSM 43833]
 gi|296094318|gb|ADG90270.1| D-alanine/D-alanine ligase [Thermobispora bispora DSM 43833]
          Length = 316

 Score =  283 bits (725), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 99/308 (32%), Positives = 159/308 (51%), Gaps = 16/308 (5%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62
           VL GG+S EREVSL SG+  A  L  AG  V   D D  +   +    P+ AF  LHG  
Sbjct: 9   VLAGGLSYEREVSLRSGRRVAEVLRAAGVDVEVRDTDAGLVPAVLADPPEAAFVALHGGV 68

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ- 121
           GEDG ++++LELL +PY  +   A  ++ DK  +K VV S G+    S+ + + T     
Sbjct: 69  GEDGAIRSVLELLNVPYVGATPDACRVAFDKPTAKAVVRSWGLATPDSVALPKETFHDLG 128

Query: 122 ---------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                      +  P  +KP +GGS+LG  +++  + +P  ++    + +GD  LIE+Y+
Sbjct: 129 ASAVLERIVDRLGLPLFVKPAQGGSALGASIVRTAEELPAAMV--GCFAYGDTALIEKYI 186

Query: 173 DGIELTCGVMGDASLDV---TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           DG+E++  V+      V       VP    Y Y  +Y++  +    PA++  +  +  + 
Sbjct: 187 DGVEVSVSVIDLGDGPVALTPVEIVPDGGVYDYAARYTAGRTEFFAPARLTDEEIEACKA 246

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           +A  AH A+G R +SR+D + D  S + ++LE+NV PGMT  S+FP     AG     + 
Sbjct: 247 MAVTAHTALGLRDLSRTDIIVD-RSGQPYFLEVNVSPGMTETSLFPMAVETAGRDLGTVF 305

Query: 290 LWMVEDAS 297
             ++E A+
Sbjct: 306 RVLLERAA 313


>gi|294674880|ref|YP_003575496.1| D-alanine--D-alanine ligase [Prevotella ruminicola 23]
 gi|294474235|gb|ADE83624.1| D-alanine--D-alanine ligase [Prevotella ruminicola 23]
          Length = 330

 Score =  283 bits (725), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 88/325 (27%), Positives = 154/325 (47%), Gaps = 35/325 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40
           +A++ GG SSE +VSL S +   S  +   + V  +D+                    D 
Sbjct: 8   IAIVCGGDSSEHDVSLRSAQGLYSFFDKERYNVYIVDIKGQDWHVELPDGTTAKIDRNDF 67

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           S          D A+  +HG  GE+GL+Q   +L+ +PY+ SG+L  A++ DK    Q +
Sbjct: 68  SFMENGEAKIFDYAYITIHGTPGENGLLQGYFDLIGLPYSTSGVLVEAMTFDKFVLNQYL 127

Query: 101 SSCGVPVCPSILVNR------FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154
              GV V  S+L+ +         + +  I  P  +KP   GSS G+  +K+   +   +
Sbjct: 128 RGYGVKVADSLLIRKGYEELVSDDEIEERIGMPCFVKPAADGSSFGVSKVKEKDMLAPAI 187

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS----LDVTEIAVPKSDFYSYELKYSSLN 210
            +  +     ++++E Y++G E++ GV         L  TE+ V  ++F+ Y+ KY+   
Sbjct: 188 RK--AMLESPEIMVESYLEGTEISIGVYKTKEKAVVLPATEV-VTSNEFFDYDAKYN-GQ 243

Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270
              + PA++P D+ + V+++    +  + C GI R DF+       +  LE+N  PGMT 
Sbjct: 244 VQEITPARLPEDVTERVRQITSHIYDILHCNGIIRIDFIISK-EGSISMLEVNTTPGMTA 302

Query: 271 VSIFPEMAAYAGYSFRELLLWMVED 295
            S  P+    AG S  ++L  +VE+
Sbjct: 303 TSFIPQQVRAAGLSMTDVLTEIVEN 327


>gi|224024579|ref|ZP_03642945.1| hypothetical protein BACCOPRO_01305 [Bacteroides coprophilus DSM
           18228]
 gi|224017801|gb|EEF75813.1| hypothetical protein BACCOPRO_01305 [Bacteroides coprophilus DSM
           18228]
          Length = 337

 Score =  283 bits (725), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 91/323 (28%), Positives = 154/323 (47%), Gaps = 33/323 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40
           +A++ GG SSE  VS+ S +   S ++   + +  +++                    D 
Sbjct: 16  IAIVAGGDSSEHGVSMKSAEGIYSFIDQQKYNLYIVELTHKSWEAILPDGTRAAIDKNDF 75

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           S       +KPD A+  +HG  GE+G++Q   EL+ +PY+   +L SAL+  K    Q +
Sbjct: 76  SFEENGKRIKPDFAYITIHGTPGENGILQGYFELIGMPYSTCDVLVSALTFSKFLLNQYL 135

Query: 101 SSCGVPVCPSILVNRF----TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
              G+ V  S+LV +            I  P  IKP   GSS G+  +K  + I   L  
Sbjct: 136 KGFGIRVAESLLVKKKNGITDEQVIETIGLPCFIKPNASGSSFGVTKVKTKEQIQPAL-- 193

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNST 212
            +++   D ++IE ++DGIEL  G            +TE+ V K++F+ +  KY     T
Sbjct: 194 EAAFKESDDVMIEAFMDGIELANGCYKTHDKSVVFPITEV-VSKNEFFDFNAKYK-GEVT 251

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
            + PA++  ++ + VQ+L    +  + C+GI R D++      K+  LEIN  PGMT  S
Sbjct: 252 EITPARLSPELTQRVQQLTSAIYDILDCKGIVRVDYIITE-GDKINMLEINTTPGMTATS 310

Query: 273 IFPEMAAYAGYSFRELLLWMVED 295
             P+    AG   ++++  ++ED
Sbjct: 311 FIPQQVRAAGLDIKDVMTDIIED 333


>gi|225571398|ref|ZP_03780394.1| hypothetical protein CLOHYLEM_07496 [Clostridium hylemonae DSM
           15053]
 gi|225159874|gb|EEG72493.1| hypothetical protein CLOHYLEM_07496 [Clostridium hylemonae DSM
           15053]
          Length = 354

 Score =  283 bits (725), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 98/352 (27%), Positives = 159/352 (45%), Gaps = 53/352 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------------------- 38
           + VL GG+S ER+VSL SG      L + G K   +DV                      
Sbjct: 3   IIVLAGGLSPERDVSLISGAGICRTLRERGHKAFLLDVYLGLPYDSDKLNEVFDLPDAGL 62

Query: 39  --------DRSVGLVLAHLKPD------------------LAFNVLHGNFGEDGLVQAIL 72
                          +   +PD                  + F  LHG+ GE+G +QA  
Sbjct: 63  EIASGIKTTAPDIEAVRASRPDQSECYLGPNVVELCRLADITFMGLHGSVGENGKMQATF 122

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ-HLISP--PYV 129
           ++L I YT    L  A+SM+K+ +KQV     VP      +   T ++    +    P V
Sbjct: 123 DVLGIKYTGPNSLGCAMSMNKLVAKQVFKMTRVPTPRGTSLTEETKNTPLDELGYYLPLV 182

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           +KP   GSSLG+ +   ++     + +S   +H D+++IE ++ G E  CG++   +L +
Sbjct: 183 VKPCSSGSSLGVYICHTEEDYKEAVRRSFDEDHQDEVVIEPFIKGREYACGILAGKALPL 242

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
            EI +P+ + +SYE KY    +T + P   +     K++QR    A  A+     +R+DF
Sbjct: 243 VEI-IPRDEVFSYENKYQDGGATEICPPVSLDAKTMKKIQRAGEKAFDALRMDVYARADF 301

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           + D    + + LE+N  PGMTP S+ P  A  AG  + EL   ++E++  +R
Sbjct: 302 IVDETDGRFYCLEMNGLPGMTPTSLLPRAALNAGMDYGELCEKIIEESMKVR 353


>gi|119718908|ref|YP_925873.1| D-alanine--D-alanine ligase [Nocardioides sp. JS614]
 gi|119539569|gb|ABL84186.1| D-alanine--D-alanine ligase [Nocardioides sp. JS614]
          Length = 323

 Score =  283 bits (724), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 106/311 (34%), Positives = 165/311 (53%), Gaps = 18/311 (5%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62
           VL GG+S ER+VSL SG+  A AL   G +V++ DVD S+   L   +PD    +LHG  
Sbjct: 13  VLAGGLSHERDVSLRSGRRVAEALRATGLEVTERDVDASLLATLRDERPDCVVPMLHGET 72

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ- 121
           GEDG ++ ILELL +PY  +   A  ++ DK  +K VV+  GV    S+ +   T     
Sbjct: 73  GEDGAIREILELLGVPYVGAPPAACRVAFDKPVAKAVVARAGVLTPESVCLPHETFRELG 132

Query: 122 ---------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                      +  P ++KP + GS+LG  V++  + +P  ++  S++ +GD  L+E++V
Sbjct: 133 AGAVMAALVDRLGLPLMVKPTRSGSALGCTVVRTAEQLPAAMV--SAFAYGDVALLERFV 190

Query: 173 DGIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
            G+E+   V+ D     +L    I  P    Y Y  +Y++  +  V PA +  ++  EV 
Sbjct: 191 PGMEVAVPVVDDGSGARALPAVAIQ-PDGGVYDYTARYTAGATEFVTPAPLSEELAAEVA 249

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           R+A LAH+ +G R +SRSD + D   R V++LE+NV PG T  S  P     AG    ++
Sbjct: 250 RVALLAHEVLGLRDVSRSDLIIDHEGR-VWFLEVNVAPGFTETSTVPLAIQAAGLDLGKV 308

Query: 289 LLWMVEDASCL 299
              MV+ A+  
Sbjct: 309 CASMVQAAAAR 319


>gi|331002650|ref|ZP_08326165.1| hypothetical protein HMPREF0491_01027 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330407063|gb|EGG86567.1| hypothetical protein HMPREF0491_01027 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 349

 Score =  283 bits (724), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 90/350 (25%), Positives = 159/350 (45%), Gaps = 54/350 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           +A++ GG SSE E+S+ S    +  ++++ +++  I + ++   +               
Sbjct: 4   LAIVFGGQSSEHEISVISATNISKQVDESKYELILIGITKTGKWLKVDSIASMEDGSWIN 63

Query: 47  ------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
                                     +  D+ F VLHG FGEDG +Q +LEL  IPY   
Sbjct: 64  SKINAYILPDAIKKCIIVEIDGEYKEVHVDVVFPVLHGLFGEDGTIQGLLELSGIPYVGC 123

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPL 133
           G+LASA+ MDK+ +K VV   G+       V  + +           +     P  +KP 
Sbjct: 124 GVLASAVGMDKLYTKLVVDKLGIRQADYEPVIDYEVREDFKRVVKRIEDRFDYPVFVKPS 183

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVTEI 192
             GSS G+      + +   +L++   NH  ++L+E+ + G E+ CGV+G    +  + +
Sbjct: 184 NAGSSKGVSKASNREELEKGILEAL--NHDRKVLVEETIVGHEVECGVLGRPGEVMASGV 241

Query: 193 AVPKS--DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
              KS   FY Y+ KY   + T +  +++P  + +++   A     A+   G+SR DF  
Sbjct: 242 GEIKSAATFYDYDAKYKLDSLTLL-DSQLPNGVREKLPECAKKIFTALDGFGLSRVDFF- 299

Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
                ++ + EIN  PG T +S++P +   AG   +EL+  ++E A   R
Sbjct: 300 AKEDGEIVFNEINTMPGFTAISMYPMLFEAAGIGKKELVDRLIELAFERR 349


>gi|270291006|ref|ZP_06197229.1| D-alanine-D-alanine ligase [Pediococcus acidilactici 7_4]
 gi|270280402|gb|EFA26237.1| D-alanine-D-alanine ligase [Pediococcus acidilactici 7_4]
          Length = 351

 Score =  283 bits (724), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 96/344 (27%), Positives = 164/344 (47%), Gaps = 58/344 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------------------- 38
           +AVL GG S+ER VSLSSG     AL   G + + ID+                      
Sbjct: 3   IAVLAGGKSTERNVSLSSGSKITDALRAKGHEATMIDLFLGYDLQEGQTVEDVFETSNTD 62

Query: 39  ---------------------------DRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAI 71
                                       ++V  +L     D  F  LHG  GE+G VQA+
Sbjct: 63  SDYEIQTDVLTDADIEKLRTDGTVGLFGKNVLEILRAA--DFVFLALHGGDGENGKVQAV 120

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT-MDSQHLISPPYVI 130
           L+L +I YT SG LAS ++MDK  SK+++    +     ++++    +  Q     P V+
Sbjct: 121 LDLNDIKYTGSGTLASGIAMDKAISKEIMLYNDIKTARFVVLHEEDGIHPQLDFGFPVVV 180

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190
           KP  GGSS+G +++  ++ +        ++   D++++E+++ G E + GV+ + ++   
Sbjct: 181 KPNSGGSSVGTMIVHDEEEL--ADSLRDAYRFDDEIIVEEFITGREFSLGVVNEQAMPAI 238

Query: 191 EIAVPKSDFYSYELKYSSLNST-HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
           EI V    +Y YE K+ +  +T  + P  I  +++ E++R+A    + +G     R DFL
Sbjct: 239 EIVV-NDGWYDYEHKFKTGTTTQFITPPDIDEEVHDEMKRVAVKTMKVLGMTNYGRVDFL 297

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            +     V+ +E N  PGMTP+S+ P+ A  AG S+ +L   ++
Sbjct: 298 VNDQG--VYVIEANNLPGMTPLSLLPQEAEAAGISYEDLCESII 339


>gi|206602129|gb|EDZ38611.1| D-alanine--D-alanine ligase [Leptospirillum sp. Group II '5-way
           CG']
          Length = 303

 Score =  283 bits (724), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 94/295 (31%), Positives = 147/295 (49%), Gaps = 6/295 (2%)

Query: 5   MGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGE 64
           MGG S E  VS  SGKA   AL   G++   ++    +   L    PD+ F   HG  GE
Sbjct: 1   MGGDSPEAAVSRMSGKAVLEALRSRGYEAIPVEAGPDLFHTLLRTSPDVCFLATHGGHGE 60

Query: 65  DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI 124
           +G +Q  LE+L IPYT SG+L SAL M K  S+ +    G+ V  ++ +      +   I
Sbjct: 61  NGALQGCLEVLGIPYTGSGVLGSALGMSKSASRALFRQGGLDVPETVAIEAGEKVTPDKI 120

Query: 125 SPPY--VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
             P   ++KP   GSS+G+  +     +P  LL++    H  ++L+E ++ G E+   ++
Sbjct: 121 PFPLPFMVKPESAGSSIGVTRVDHFSDLPQALLEAE--KHSPRVLVEPFLAGREVQSAIL 178

Query: 183 GDASLDVTEIAVPKSD-FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241
               L   EI    S+ FY+Y  KY    S H+ PA +  D+   ++     A   +  R
Sbjct: 179 DGRYLGAIEIVPDSSEPFYTYASKYQKGKSRHIFPAPLTSDVAARLEEATLRAFGLLELR 238

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           G++R D L    + +V  LE+N  PG+T  S+ PE+A   G SF +L+  ++  A
Sbjct: 239 GVARMDTLVLE-NGRVVVLEMNTLPGLTETSLVPEIARGCGLSFEDLVETILSSA 292


>gi|256044912|ref|ZP_05447816.1| D-alanine--D-alanine ligase A [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|260565487|ref|ZP_05835971.1| D-alanine-D-alanine ligase A [Brucella melitensis bv. 1 str. 16M]
 gi|265991340|ref|ZP_06103897.1| D-alanine-D-alanine ligase A [Brucella melitensis bv. 1 str. Rev.1]
 gi|38257346|sp|Q8YHR9|DDLA_BRUME RecName: Full=D-alanine--D-alanine ligase A; AltName:
           Full=D-Ala-D-Ala ligase A; AltName: Full=D-alanylalanine
           synthetaseA
 gi|260151555|gb|EEW86649.1| D-alanine-D-alanine ligase A [Brucella melitensis bv. 1 str. 16M]
 gi|263002124|gb|EEZ14699.1| D-alanine-D-alanine ligase A [Brucella melitensis bv. 1 str. Rev.1]
          Length = 353

 Score =  283 bits (724), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 94/347 (27%), Positives = 165/347 (47%), Gaps = 51/347 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           + VL GG S+E +VS+ S     +AL+ A ++   + V R+   +L              
Sbjct: 8   IVVLFGGRSAEHDVSVLSATNVMNALDPAKYEAVPVFVTRAGQWLLSRFVNGALEKPSSG 67

Query: 47  -----------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                     K D+ F VLHG  GEDG VQ + ++  +P    G
Sbjct: 68  AELCLVPGGCGRAIVVPDAGAPYEADKIDIIFPVLHGLHGEDGAVQGLAQVARVPLAGCG 127

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSL 139
           I  SA ++DK  +K++V+  G+    S+ + R  + +    +  +  P  IKP + GSS+
Sbjct: 128 IPGSANALDKDIAKRLVNEAGLSTAKSVTITREEVPAFSALEQALGLPIFIKPARQGSSV 187

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD--ASLDVT---EIAV 194
           G+  +  +      +  S  + + D+LL E+++   E+ CGV+ D   +L V+   EI  
Sbjct: 188 GVHKVVTEADYQAAM--SDGFIYDDKLLAEEFIQAREVECGVLEDEGGALFVSRAGEIVP 245

Query: 195 PKSD-FYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            +S  FYSY+ KY   + T +  PA++P  +  E++ +A  A + +GC  ++R DF    
Sbjct: 246 AESHCFYSYDAKYIDADGTEIKVPAELPEQVENEIRAIAAKAFRVLGCDSMARVDFFVTA 305

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
             R++   EIN  PG T +S++ ++ A +G S+ E++  +V      
Sbjct: 306 -DRRIVLNEINTIPGFTDMSMYFKVMAVSGVSYPEIINRLVAHGLAR 351


>gi|238760617|ref|ZP_04621746.1| D-alanine--D-alanine ligase [Yersinia aldovae ATCC 35236]
 gi|238701177|gb|EEP93765.1| D-alanine--D-alanine ligase [Yersinia aldovae ATCC 35236]
          Length = 249

 Score =  283 bits (724), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 86/251 (34%), Positives = 139/251 (55%), Gaps = 13/251 (5%)

Query: 55  FNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
           F  LHG  GEDG +Q +LE L++PYT SG++ASAL+MDK+R+K V  + G+P+ P + +N
Sbjct: 2   FIALHGRGGEDGTLQGVLEFLKLPYTGSGVMASALTMDKLRTKLVWQASGLPISPYVALN 61

Query: 115 RFT---------MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
           R             +   +  P ++KP + GSS+G+  + K   +   L++  ++ H   
Sbjct: 62  RQQFATLSPEALAAAVAQLGLPLIVKPSREGSSVGMSKVDKMSGLHDALVE--AFRHDSD 119

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
           +LIE+++ G E T  ++GD  L    I  P   FY YE KY S  + +  P+ +  ++ +
Sbjct: 120 VLIEKWLSGPEFTVAIVGDDVLPSIRIQAP-GVFYDYEAKYLSDKTQYFCPSGLSSELEQ 178

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285
           ++  LA  A+QA+ C G  R D + D      + LE+N  PGMT  S+ P  A  +G SF
Sbjct: 179 QLATLALQAYQALDCSGWGRVDVMQD-SDGSFYLLEVNTSPGMTSHSLVPMAARQSGLSF 237

Query: 286 RELLLWMVEDA 296
            +L+  ++  A
Sbjct: 238 SQLVARILTLA 248


>gi|166032106|ref|ZP_02234935.1| hypothetical protein DORFOR_01809 [Dorea formicigenerans ATCC
           27755]
 gi|166027829|gb|EDR46586.1| hypothetical protein DORFOR_01809 [Dorea formicigenerans ATCC
           27755]
          Length = 355

 Score =  283 bits (724), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 96/352 (27%), Positives = 156/352 (44%), Gaps = 53/352 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID----------------------- 37
           + VL GG+S ER+VSL+SG      L + G +   +D                       
Sbjct: 3   IIVLAGGLSPERDVSLTSGAGICKTLLENGHQAYLLDLYFGLENAPANLEDVFTLPGAGL 62

Query: 38  -------VDRSVGLVLAHLKPD------------------LAFNVLHGNFGEDGLVQAIL 72
                          L   +PD                  + F  LHG+ GE+G +QA  
Sbjct: 63  EIAKNISTKEPDLEALKKSRPDQSDCMFGPNVIELCRMADITFVALHGSVGENGKLQAAF 122

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD---SQHLISPPYV 129
           +LL I YT       ALSM+K+ +KQ+    GVP      + ++T D   S+     P V
Sbjct: 123 DLLGIKYTGCNSFGCALSMNKLVTKQIYKMSGVPTPRGTHLTKYTKDLPLSELGYYLPLV 182

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           +KP + GSS+G+ +   ++     + +S   N  ++L+IE Y+ G E    V+   +L +
Sbjct: 183 VKPCENGSSIGVYICHTEEEYNNAVRESFEKNPDEELVIEPYIKGREFASAVIAGKALPL 242

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
            EI +PK   ++YE KY +  +  + P   I  +  + + R    A  A+     +R+DF
Sbjct: 243 VEI-IPKDGVFNYENKYQAGGAQEICPPVSIDEETQQRMMRAGEEAFAALRMDVYARADF 301

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           + D    + + LE+N  PGMT  S+ P+ A  AG  + EL   ++E++   R
Sbjct: 302 IIDDEDGEFYSLEMNALPGMTAASLLPKAAKAAGIEYNELCERIIEESMNAR 353


>gi|256833758|ref|YP_003162485.1| D-alanine--D-alanine ligase [Jonesia denitrificans DSM 20603]
 gi|256687289|gb|ACV10182.1| D-alanine--D-alanine ligase [Jonesia denitrificans DSM 20603]
          Length = 319

 Score =  283 bits (724), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 95/300 (31%), Positives = 159/300 (53%), Gaps = 18/300 (6%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + +L GG+S ER+VSL SG+  A AL   G  VS +DVD  +   L   +PDL + +LHG
Sbjct: 7   VVILAGGLSHERDVSLRSGRRVAEALRSTGMTVSVVDVDAQLLPRLQSHRPDLVWPLLHG 66

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF---- 116
             GEDG ++ +LELL++PY  +    S ++ +K  +K V+++ GV     + + +     
Sbjct: 67  ASGEDGSIRDVLELLDLPYLGTRPRESRVAWNKPVAKAVLAAAGVLTPSYVTLPQSLFRE 126

Query: 117 ------TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                        +  P V+KP +GGS+LG+ ++   + +P  L+   +  +GD  LIE+
Sbjct: 127 LGARSVMEPVTAKLGLPLVVKPAQGGSALGVTLVTSAEQLPQALVDCFA--YGDLALIEE 184

Query: 171 YVDGIELTCGVMGDA---SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227
            + G E++  V+      +L   EI       Y Y+ +Y+   + +  PA++  +I    
Sbjct: 185 AITGTEVSVSVVESPDVTALPAVEIIT--DGPYDYDARYNPGRTQYFTPARLDPEIADAA 242

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287
            R+A  AH  +G R +SRSD + D    +V++LE+NV PGMT  S+ P+    +G S  +
Sbjct: 243 ARVALTAHTTLGLRHVSRSDLIIDGK-GQVWFLEVNVAPGMTETSLLPQAVVASGQSLPD 301


>gi|119505118|ref|ZP_01627194.1| D-alanine-D-alanine ligase and related ATP-grasp enzyme [marine
           gamma proteobacterium HTCC2080]
 gi|119459100|gb|EAW40199.1| D-alanine-D-alanine ligase and related ATP-grasp enzyme [marine
           gamma proteobacterium HTCC2080]
          Length = 309

 Score =  283 bits (724), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 98/292 (33%), Positives = 150/292 (51%), Gaps = 6/292 (2%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGN 61
           AVLMGG ++ERE+SL SG+  AS LE AG  V++ID              D  FN+LHG 
Sbjct: 12  AVLMGGAAAEREISLQSGENVASVLEAAGCPVTRIDP-AVEQWADQLSDIDFVFNLLHGP 70

Query: 62  FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ 121
            GEDG++Q + +++ +PY+ SG+L SAL+MDK R+KQ+ S  G+P     L+   T  S 
Sbjct: 71  GGEDGVLQGLFDVMNLPYSGSGVLGSALTMDKARTKQLWSGMGLPTPDFTLLTADTDWSD 130

Query: 122 HLIS-PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            +       +KP   GSS+G+      + +     ++ ++  G  ++ E +V G E T  
Sbjct: 131 LIERHGTLFVKPALEGSSIGMSKASTPEQLEAAWKRARAYKGG--IIAECFVAGEEYTVS 188

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           ++GD +L    I  P S+FY ++ KY S N+    P+ +      E+  LA  A  A+  
Sbjct: 189 ILGDRALPAIRIE-PASEFYDFDAKYVSDNTGFFCPSGLTASDEAELSALALRAFYAVDA 247

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
               R D + D +S     LE+N  PGMT  S+ P  A     +  + L  +
Sbjct: 248 AVWGRVDVMRD-ISGAWQLLEVNTIPGMTSHSLVPMAARADSMTLIDFLSEI 298


>gi|269218666|ref|ZP_06162520.1| D-alanine--D-alanine ligase [Actinomyces sp. oral taxon 848 str.
           F0332]
 gi|269211777|gb|EEZ78117.1| D-alanine--D-alanine ligase [Actinomyces sp. oral taxon 848 str.
           F0332]
          Length = 370

 Score =  283 bits (724), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 92/360 (25%), Positives = 152/360 (42%), Gaps = 67/360 (18%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD-------- 52
           +A++ GG S E  VS  +  +   A++   + V  I + R    V     PD        
Sbjct: 6   VALIYGGASGEHSVSCMTAASVLRAMDPDKYDVVPIGIRRDGTWVPGSADPDALEAAGPQ 65

Query: 53  ----------------------------------------LAFNVLHGNFGEDGLVQAIL 72
                                                   +AF +LHG FGEDG +Q  L
Sbjct: 66  GEVGGSPSRVLIEIGGKPRALTLVESEGGAPVVEALGSFDVAFPLLHGPFGEDGTIQGFL 125

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHL 123
           E+  +PY   G+ ASA  MDK   K V+ S G+ V P +LV              +    
Sbjct: 126 EMAGVPYVGCGVFASAAGMDKHFMKVVLESAGIAVAPYVLVAPRRWRTEKGQILAEIAQK 185

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           ++ P  +KP + GSSLGI  + +   +   +  +++     ++++EQ V G E+ C V+G
Sbjct: 186 LTFPVFVKPARAGSSLGIGKVLEPGGLERAI--AAAQKVDPKVIVEQGVKGREVECAVLG 243

Query: 184 D------ASLDVTEIAVPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
                   +  + EI +  +D+Y +E KY  +      +PA +  D+  E +R+A    +
Sbjct: 244 GRGDAAPRTSILGEIVMDGTDWYDFETKYIQTEGFHMAVPAPVEADVEAEARRIAARVFE 303

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           A  C G++R DF       ++   E N  PG T  S++P +  + G  + EL+  +V  A
Sbjct: 304 AFDCEGMTRVDFFLT-DDGEILVNEHNTIPGFTEFSMYPILWEHTGIPYSELIDELVALA 362


>gi|261368270|ref|ZP_05981153.1| D-alanine--D-alanine ligase [Subdoligranulum variabile DSM 15176]
 gi|282569787|gb|EFB75322.1| D-alanine--D-alanine ligase [Subdoligranulum variabile DSM 15176]
          Length = 370

 Score =  283 bits (724), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 96/360 (26%), Positives = 164/360 (45%), Gaps = 62/360 (17%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDA----GFKVSQIDVDRSVGLVLAHLKP----- 51
           +A+  GG+SSE EVS  S  A   AL +A     ++V  + + ++   +  H  P     
Sbjct: 9   VALFFGGVSSEHEVSCVSASAWLRALNEAPCAGRYEVFPVGITKTGRWLACHPTPEAMAD 68

Query: 52  ------------------------------------DLAFNVLHGNFGEDGLVQAILELL 75
                                               D+   V+HG  GEDG +Q + E+ 
Sbjct: 69  GSWEQGADCVPCILSPDRGDHGVWLLRDGQAELVPIDICAPVMHGKNGEDGTIQGLFEMA 128

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD---------SQHLISP 126
            IPY   G+LASA+ MDK  +  V+ + GVP C      R  ++         ++  +  
Sbjct: 129 RIPYVGCGVLASAVCMDKALANTVMDAAGVPHCRWTSAIRAEVEQDRAAVLDRAEAALGY 188

Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186
           P  +KP   GSS+GI   K      LD     +    D++++E+++DG E+ C  +G+  
Sbjct: 189 PIFVKPANAGSSVGIS--KAADRAALDAALDVALREDDKVVLEEFIDGQEVECAAIGNPD 246

Query: 187 LDV------TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
                        +  ++FY+Y+ KY +  S  V+PA +  +   EV+  A  A+ A+GC
Sbjct: 247 DPANITTTRPGEILAGAEFYTYDDKYKNGVSQTVIPAHLSEEKLDEVKAEARKAYLALGC 306

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
            G+SR DF  +  + +V   E+N  PG T +S++P++  + G +F +L+  +++ A   R
Sbjct: 307 AGLSRCDFFVERGTGRVLCNELNTLPGFTAISMYPKLMEHEGVNFPQLVDRLLQLAVRRR 366


>gi|306823715|ref|ZP_07457090.1| D-alanine-D-alanine ligase [Bifidobacterium dentium ATCC 27679]
 gi|309803027|ref|ZP_07697128.1| D-ala D-ala ligase N-terminal domain protein [Bifidobacterium
           dentium JCVIHMP022]
 gi|304553422|gb|EFM41334.1| D-alanine-D-alanine ligase [Bifidobacterium dentium ATCC 27679]
 gi|308220494|gb|EFO76805.1| D-ala D-ala ligase N-terminal domain protein [Bifidobacterium
           dentium JCVIHMP022]
          Length = 378

 Score =  283 bits (724), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 88/370 (23%), Positives = 155/370 (41%), Gaps = 77/370 (20%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           + V+ GG + E  +S  S      AL+   F+   + + ++   ++    P         
Sbjct: 6   IVVMYGGKADEHSISCISTAGVLRALDVEKFEAIPVGITKTGQWIVDGEDPRGWNMSEGM 65

Query: 52  --------------------------------------DLAFNVLHGNFGEDGLVQAILE 73
                                                 D    VLHG +GEDG +Q + E
Sbjct: 66  PIVRKTDTAKDVVLDVALGQDGFFAREADGTLTSLGHVDAVLPVLHGPYGEDGTIQGLFE 125

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---------- 123
           ++ +PY   G+LASA  MDK  +K ++++ G+PV P I ++    D+             
Sbjct: 126 MMNVPYVGCGVLASAACMDKHYTKVLLAAAGIPVAPGITLDARDYDAACAFAANGETMLA 185

Query: 124 ------ISPPYVIKPLKGGSSLGIIVIKKD-QSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
                 +  P  +KP + GSS G+  ++++  +  L      + +H  ++L+EQ +D  E
Sbjct: 186 AVQAAGLRYPLFVKPSRAGSSFGVTKVEREGDAAELAAAVFEASHHDWRVLVEQGIDARE 245

Query: 177 LTCGVMGDASLDVTEIAVP-----------KSDFYSYELKYSSLNSTHVL-PAKIPLDIY 224
           + C V+   + D    + P              FY ++ KY    ++HV  PA +P +  
Sbjct: 246 IECAVLCPKAGDEPRASWPGEIVLDKRAGGDDQFYDFDSKYMDAEASHVEVPAALPQETL 305

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
           + V+  A  A +A+   G+SR D        KV   EIN  PG TP+S++P+     G S
Sbjct: 306 ELVRETAKKAFKAVDGTGLSRVDTFVTA-DGKVMVNEINTMPGFTPISMYPKAWDATGVS 364

Query: 285 FRELLLWMVE 294
           + +L+  ++E
Sbjct: 365 YTDLISTLIE 374


>gi|33336050|gb|AAQ12893.1| truncated D-alanine:D-alanine ligase [Enterococcus faecium]
          Length = 330

 Score =  283 bits (724), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 86/322 (26%), Positives = 149/322 (46%), Gaps = 51/322 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV-------------LA 47
           + +L GG S+E EVS+ S  +  +A+    ++V  + + +    V             + 
Sbjct: 3   ITLLYGGRSAEHEVSILSAFSVLNAIYYNYYQVQLVFITKEGQWVKGPLLTEKPASKDVL 62

Query: 48  HLKPD------------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
           HL  D                        + F VLHG  GEDG +Q  LE L +PY  +G
Sbjct: 63  HLSWDPSGQTEEGFTGKVINPGEIKEEGAIVFPVLHGPNGEDGTIQGFLETLNMPYVGAG 122

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLK 134
           +L SA +MDK+ +K ++ + GVP  P + V +              +  +  P  +KP  
Sbjct: 123 VLTSACAMDKIMTKYILQAAGVPQVPYVPVLKNQWKENPKKVFDQCEGSLLYPMFVKPAN 182

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI-- 192
            GSS+GI   +  + +   L  ++++ +  + ++EQ ++  E+   V+G+  +  T    
Sbjct: 183 MGSSVGITKAENREELQNAL--ATAYQYDSRAIVEQGIEAREIEVAVLGNEDVRTTLPGE 240

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            V    FY YE KY +      +PA++P ++Y++ Q  A LA+  +G  G+SR DF    
Sbjct: 241 VVKDVAFYDYEAKYINNKIEMQIPAEVPEEVYQKAQEYAKLAYTMLGGSGLSRCDFFLTN 300

Query: 253 LSRKVFWLEINVQPGMTPVSIF 274
              ++F  E+N  PG T  S++
Sbjct: 301 K-NELFLNELNSMPGFTEFSMY 321


>gi|313899544|ref|ZP_07833053.1| D-ala D-ala ligase N-terminal domain protein [Clostridium sp. HGF2]
 gi|312955651|gb|EFR37310.1| D-ala D-ala ligase N-terminal domain protein [Clostridium sp. HGF2]
          Length = 355

 Score =  282 bits (723), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 88/349 (25%), Positives = 147/349 (42%), Gaps = 55/349 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44
           +A++ GG SSE  VSL S  +    +    +++  I + +                    
Sbjct: 6   LAIIFGGKSSEYPVSLHSAGSLIHKINKEHYELIFIGISKDGKWYAYDGDVDGIEHDTWL 65

Query: 45  --------------------------VLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIP 78
                                         ++ D  F +LHG  GEDG +Q + EL  IP
Sbjct: 66  CEEHCTPCVLSSSEGCRGFLKLHADGTFTRIEVDCIFPILHGKNGEDGTIQGLFELSGIP 125

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--------MDSQHLISPPYVI 130
           Y   G ++SA+ MDK  +  V+   G+   P + V              ++  +  P  I
Sbjct: 126 YVGCGHMSSAICMDKEMAHIVMEHAGISCAPFVCVYEADDLDYRKVYEHAKETLGLPIFI 185

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--- 187
           KP   GSS GI  ++        +  +   +   ++++E  ++G E+   VMG+  L   
Sbjct: 186 KPANAGSSFGIHRMESFDGFEEAMKDAFYHDGKGKVILETTIEGFEIGVAVMGNKELFAG 245

Query: 188 DVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
            V EI    + F+ YE KY  ++S    PA+I   +++E + +A  A++A+ C+G++R D
Sbjct: 246 SVDEIETA-APFFDYEGKYEMVDSHIYCPARISPKLFEEAREIAKKAYRAMNCKGMTRVD 304

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
               P    +   E+N  PG T  S +P M   AG  F EL+  +V  A
Sbjct: 305 MFVTPED-TIILNEVNTIPGFTDTSRYPTMMKEAGIPFPELIDKLVALA 352


>gi|33866175|ref|NP_897734.1| D-alanyl-alanine synthetase A [Synechococcus sp. WH 8102]
 gi|39930834|sp|Q7U5Q9|DDL_SYNPX RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|33639150|emb|CAE08156.1| D-alanine--D-alanine ligase [Synechococcus sp. WH 8102]
          Length = 353

 Score =  282 bits (723), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 94/346 (27%), Positives = 158/346 (45%), Gaps = 52/346 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASAL----EDAGFKVSQIDVDRSVGL--------VLAH 48
           + V+ GG S E +VS+ S +  A  L        ++V  + +DR            VL+ 
Sbjct: 8   VGVVFGGCSGEHDVSIRSAQTVAKGLTLGANRERYRVVLVYIDRDGRWWGPDLAGKVLSS 67

Query: 49  LKP----------------------DLA---FNVLHGNFGEDGLVQAILELLEIPYTHSG 83
             P                      D+    + VLHG  GEDG +Q + EL++ PY  +G
Sbjct: 68  GCPPADSDLPQPLPAPGFRGLPAGTDVVAVWYPVLHGPNGEDGTIQGLFELMQQPYVGAG 127

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL-----------ISPPYVIKP 132
           +L SA+SMDK   K  ++  G+   P +      +                +  P  IKP
Sbjct: 128 VLGSAVSMDKQAMKAALAGAGLAQVPYVCAQADELSDAARQEALLKRIESGLCYPCFIKP 187

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192
              GSS+GI   +  + +   L  +++     +L++EQ V   EL C V+G  +L  + +
Sbjct: 188 ANLGSSVGISKARNREELIHGLRLAATL--DPRLVVEQGVQARELECAVLGGTTLRASVV 245

Query: 193 AVP--KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
                 +D+Y YE KY+   ST ++PA +P  I + ++  +  A  A+G  G++R DF +
Sbjct: 246 GEVRFDADWYDYETKYTDGRSTTLIPAPLPDGIVEAIRSQSIQACAAVGVTGMARVDFFY 305

Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           D    +V+  EIN  PG T  S++P +   +G +  +L+  ++E A
Sbjct: 306 DDSRDRVWLNEINTLPGFTSQSMYPMLWEASGVTLEQLVHELLESA 351


>gi|62290178|ref|YP_221971.1| D-alanyl-alanine synthetase A [Brucella abortus bv. 1 str. 9-941]
 gi|82700100|ref|YP_414674.1| D-alanyl-alanine synthetase A [Brucella melitensis biovar Abortus
           2308]
 gi|189024413|ref|YP_001935181.1| D-alanyl-alanine synthetase A [Brucella abortus S19]
 gi|254689483|ref|ZP_05152737.1| D-alanine--D-alanine ligase/VANA/B/C [Brucella abortus bv. 6 str.
           870]
 gi|254693970|ref|ZP_05155798.1| D-alanine--D-alanine ligase/VANA/B/C [Brucella abortus bv. 3 str.
           Tulya]
 gi|254697620|ref|ZP_05159448.1| D-alanine--D-alanine ligase/VANA/B/C [Brucella abortus bv. 2 str.
           86/8/59]
 gi|254730511|ref|ZP_05189089.1| D-alanine--D-alanine ligase/VANA/B/C [Brucella abortus bv. 4 str.
           292]
 gi|256257731|ref|ZP_05463267.1| D-alanine--D-alanine ligase/VANA/B/C [Brucella abortus bv. 9 str.
           C68]
 gi|260546722|ref|ZP_05822461.1| D-alanine-D-alanine ligase/VANA/B/C [Brucella abortus NCTC 8038]
 gi|260755006|ref|ZP_05867354.1| D-Ala-D-Ala ligase A [Brucella abortus bv. 6 str. 870]
 gi|260758222|ref|ZP_05870570.1| D-Ala-D-Ala ligase A [Brucella abortus bv. 4 str. 292]
 gi|260762049|ref|ZP_05874392.1| D-Ala-D-Ala ligase A [Brucella abortus bv. 2 str. 86/8/59]
 gi|260884017|ref|ZP_05895631.1| D-alanine-D-alanine ligase A [Brucella abortus bv. 9 str. C68]
 gi|261214261|ref|ZP_05928542.1| D-Ala-D-Ala ligase A [Brucella abortus bv. 3 str. Tulya]
 gi|297248570|ref|ZP_06932288.1| D-alanine-D-alanine ligase A [Brucella abortus bv. 5 str. B3196]
 gi|62196310|gb|AAX74610.1| DdlA, D-alanine--D-alanine ligase A [Brucella abortus bv. 1 str.
           9-941]
 gi|82616201|emb|CAJ11247.1| D-alanine--D-alanine ligase/VANA/B/C:D-alanine--D-alanine ligase
           [Brucella melitensis biovar Abortus 2308]
 gi|189019985|gb|ACD72707.1| D-alanine--D-alanine ligase/VANA/B/C [Brucella abortus S19]
 gi|260095772|gb|EEW79649.1| D-alanine-D-alanine ligase/VANA/B/C [Brucella abortus NCTC 8038]
 gi|260668540|gb|EEX55480.1| D-Ala-D-Ala ligase A [Brucella abortus bv. 4 str. 292]
 gi|260672481|gb|EEX59302.1| D-Ala-D-Ala ligase A [Brucella abortus bv. 2 str. 86/8/59]
 gi|260675114|gb|EEX61935.1| D-Ala-D-Ala ligase A [Brucella abortus bv. 6 str. 870]
 gi|260873545|gb|EEX80614.1| D-alanine-D-alanine ligase A [Brucella abortus bv. 9 str. C68]
 gi|260915868|gb|EEX82729.1| D-Ala-D-Ala ligase A [Brucella abortus bv. 3 str. Tulya]
 gi|297175739|gb|EFH35086.1| D-alanine-D-alanine ligase A [Brucella abortus bv. 5 str. B3196]
          Length = 353

 Score =  282 bits (723), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 94/347 (27%), Positives = 165/347 (47%), Gaps = 51/347 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           + VL GG S+E +VS+ S     +AL+ A ++   + V R+   +L              
Sbjct: 8   IVVLFGGRSAEHDVSVLSATNVMNALDPAKYEAVPVFVTRAGQWLLSRFVNGALEKPSSG 67

Query: 47  -----------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                     K D+ F VLHG  GEDG VQ + ++  +P    G
Sbjct: 68  AELCLVPGGCGRAIVVPDAGAPYEADKIDIIFPVLHGLHGEDGAVQGLAQVARVPLAGCG 127

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSL 139
           I  SA ++DK  +K++V+  G+    S+ + R  + +    +  +  P  IKP + GSS+
Sbjct: 128 IPGSANALDKDIAKRLVNEAGLSTAKSVTITREEVPAFSALEQALGLPIFIKPARQGSSV 187

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD--ASLDVT---EIAV 194
           G+  +  +      +  S  + + D+LL E+++   E+ CGV+ D   +L V+   EI  
Sbjct: 188 GVHKVVTEADYQAAM--SDGFIYDDKLLAEEFIQAREVECGVLEDEGGALFVSRAGEIVP 245

Query: 195 PKSD-FYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            +S  FYSY+ KY   + T +  PA++P  +  E++ +A  A + +GC  ++R DF    
Sbjct: 246 AESHCFYSYDAKYIDADGTEIKVPAELPEQVENEIRAIAAKAFRVLGCDSMARVDFFVTA 305

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
             R++   EIN  PG T +S++ ++ A +G S+ E++  +V      
Sbjct: 306 -DRRIVLNEINTIPGFTDMSMYSKVMAVSGVSYPEIINRLVAHGLAR 351


>gi|167764293|ref|ZP_02436420.1| hypothetical protein BACSTE_02678 [Bacteroides stercoris ATCC
           43183]
 gi|167698409|gb|EDS14988.1| hypothetical protein BACSTE_02678 [Bacteroides stercoris ATCC
           43183]
          Length = 324

 Score =  282 bits (723), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 90/322 (27%), Positives = 157/322 (48%), Gaps = 31/322 (9%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40
           +A++ GG +SE EVSL S +   S ++   + +  +++                    D 
Sbjct: 5   IAIVCGGDTSEFEVSLRSAQGIYSFIDKERYTLYIVEMRGTDWHVQLPDGTKTPVDRNDF 64

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           S  L  A +  D A+  +HG  GEDG +Q   ++L IPY+  G+LA+AL+ DK    Q +
Sbjct: 65  SFRLDGAKVVFDFAYITIHGTPGEDGRLQGYFDMLHIPYSCCGVLAAALTYDKFACNQYL 124

Query: 101 SSCGVPVCPSILVNR----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
            + GV +  S+L+ +       D    I  P  IKP  GGSS G+  +   + I   + +
Sbjct: 125 KAFGVRIADSLLLRQGQSVSDEDVIGKIGLPCFIKPSLGGSSFGVTKVNVKEQIQPAIAK 184

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV---TEIAVPKSDFYSYELKYSSLNSTH 213
           + +     ++L+E ++DG+E+TCG        V       V  ++++ Y+ KY+   S  
Sbjct: 185 AFA--EAKEVLVEAFMDGMEITCGCYKTKEKSVVFPITEVVSHNEYFDYKAKYN-GESDE 241

Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273
           + PA+IP ++   VQ+L    +  +G  GI R D++      K+  LE+N  PGMT  S 
Sbjct: 242 ITPARIPDELRDRVQKLTSAIYDILGASGIIRVDYIITE-GEKINLLEVNTTPGMTATSF 300

Query: 274 FPEMAAYAGYSFRELLLWMVED 295
            P+    A    ++++  ++E+
Sbjct: 301 IPQQVRAANLDIKDVMTDIIEN 322


>gi|225852765|ref|YP_002732998.1| D-alanyl-alanine synthetase A [Brucella melitensis ATCC 23457]
 gi|256263750|ref|ZP_05466282.1| D-alanine-D-alanine ligase/VANA/B/C [Brucella melitensis bv. 2 str.
           63/9]
 gi|225641130|gb|ACO01044.1| D-alanine--D-alanine ligase [Brucella melitensis ATCC 23457]
 gi|263093808|gb|EEZ17813.1| D-alanine-D-alanine ligase/VANA/B/C [Brucella melitensis bv. 2 str.
           63/9]
 gi|326409293|gb|ADZ66358.1| D-alanyl-alanine synthetase A [Brucella melitensis M28]
          Length = 353

 Score =  282 bits (723), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 94/347 (27%), Positives = 165/347 (47%), Gaps = 51/347 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           + VL GG S+E +VS+ S     +AL+ A ++   + V R+   +L              
Sbjct: 8   IVVLFGGRSAEHDVSVLSATNVMNALDPAKYEAVPVFVTRAGQWLLSRFVNGALEKLSSG 67

Query: 47  -----------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                     K D+ F VLHG  GEDG VQ + ++  +P    G
Sbjct: 68  AELCLVPGGCGRAIVVPDAGAPYEADKIDIIFPVLHGLHGEDGAVQGLAQVARVPLAGCG 127

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSL 139
           I  SA ++DK  +K++V+  G+    S+ + R  + +    +  +  P  IKP + GSS+
Sbjct: 128 IPGSANALDKDIAKRLVNEAGLSTAKSVTITREEVPAFSALEQALGLPIFIKPARQGSSV 187

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD--ASLDVT---EIAV 194
           G+  +  +      +  S  + + D+LL E+++   E+ CGV+ D   +L V+   EI  
Sbjct: 188 GVHKVVTEADYQAAM--SDGFIYDDKLLAEEFIQAREVECGVLEDEGGALFVSRAGEIVP 245

Query: 195 PKSD-FYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            +S  FYSY+ KY   + T +  PA++P  +  E++ +A  A + +GC  ++R DF    
Sbjct: 246 AESHCFYSYDAKYIDADGTEIKVPAELPEQVENEIRAIAAKAFRVLGCDSMARVDFFVTA 305

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
             R++   EIN  PG T +S++ ++ A +G S+ E++  +V      
Sbjct: 306 -DRRIVLNEINTIPGFTDMSMYSKVMAVSGVSYPEIINRLVAHGLAR 351


>gi|157413868|ref|YP_001484734.1| D-alanyl-alanine synthetase A [Prochlorococcus marinus str. MIT
           9215]
 gi|167012330|sp|A8G6B7|DDL_PROM2 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|157388443|gb|ABV51148.1| D-alanine--D-alanine ligase [Prochlorococcus marinus str. MIT 9215]
          Length = 355

 Score =  282 bits (723), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 93/345 (26%), Positives = 160/345 (46%), Gaps = 54/345 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASA----LEDAGFKVSQIDVDR---------------- 40
           + ++ GG S+E EVS+SS K    A    +    FKV    +D+                
Sbjct: 9   IGLIFGGYSNEHEVSISSAKTVFQAFNSEINKKRFKVKSFYIDKYGDWLDNDLSEKILND 68

Query: 41  ------------------SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
                             +    +     D+ F +LHG  GEDG +  +L+    P    
Sbjct: 69  EIKSNNIKKQEIVNQQKINFLDGIEFQNIDVWFPLLHGLNGEDGSIHGLLQYTRKPIVGC 128

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL-----------ISPPYVIK 131
           GIL SA+ MDK+  K + S+  +P    +      +D + +           ++ P+ +K
Sbjct: 129 GILGSAIGMDKIMMKTIFSNLKIPQVNYLAFQNEDLDDREVKKKVINEILKKLNFPFFVK 188

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSSLGI  +  +  I   L ++       ++L+E+ ++  E+ CG++G++ L  +E
Sbjct: 189 PSNSGSSLGISKVINESEILQSLEKAQ--KIDSRILVEEGLEVREIECGIIGNSELLTSE 246

Query: 192 IAVPK--SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
           I   K  SD+Y Y+ KY S N   ++PA+I   I KE++++A  + +A+   G +R DF 
Sbjct: 247 IGEIKYESDWYDYDSKYYSNN-KIIIPAEIDSKITKEIKKIAIQSCRALNIFGFARVDFF 305

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            +  S K+   EIN  PG T  S+FP +   +G +  +L+  +V+
Sbjct: 306 LEKSSNKILLNEINTIPGFTTNSMFPMLWKASGLNIEQLVAKLVD 350


>gi|291302440|ref|YP_003513718.1| D-alanine/D-alanine ligase [Stackebrandtia nassauensis DSM 44728]
 gi|290571660|gb|ADD44625.1| D-alanine/D-alanine ligase [Stackebrandtia nassauensis DSM 44728]
          Length = 364

 Score =  282 bits (723), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 87/355 (24%), Positives = 151/355 (42%), Gaps = 61/355 (17%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50
           +AV++GG S E  VS +S     +AL+   ++V  + + ++   +    +          
Sbjct: 6   VAVVLGGRSVEHPVSCASAAGVIAALDPEQYEVVAVGITQAGQWLSVDARSAKLALGDGN 65

Query: 51  -------------------------------------PDLAFNVLHGNFGEDGLVQAILE 73
                                                 D+ F VLHG +GEDG +Q +LE
Sbjct: 66  VPEISADSGQHVVLAADPTMKDVAITDAAGGARVLSDVDVVFPVLHGAYGEDGTIQGLLE 125

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT---MDSQHLISPPYVI 130
           + ++PY  S +L+SA SMDK   K+++ + G+PV   +++ R        +  +  P  +
Sbjct: 126 MADVPYVGSNVLSSAASMDKDFMKRLLKAEGIPVGDYVVLKRDQTLSEAEKQRLGLPVFV 185

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMG------ 183
           KP + GSSLGI  +     +   +  + +     ++L+E    G  EL CGV+       
Sbjct: 186 KPSRAGSSLGISKVTDWDDLDKAIATARA--VDPKVLVEAAFTGVRELECGVLEREDGGA 243

Query: 184 -DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D +     +      ++ +E KY +  S + L   +P    + ++ LA      + C  
Sbjct: 244 PDTTPPFEVLIAGTEGWFDFEAKYLASGSPYDLAPDLPEGTAERIRELAARVFTVMDCSD 303

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           ++R DF        V+  EIN  PG+TP S  P   A AG  + EL+  +V  A+
Sbjct: 304 LARVDFFL-ASDGTVYVNEINTMPGLTPGSGVPVAWANAGVDYPELVARLVRLAA 357


>gi|227494178|ref|ZP_03924494.1| possible D-alanine--D-alanine ligase [Actinomyces coleocanis DSM
           15436]
 gi|226831912|gb|EEH64295.1| possible D-alanine--D-alanine ligase [Actinomyces coleocanis DSM
           15436]
          Length = 317

 Score =  282 bits (723), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 93/312 (29%), Positives = 164/312 (52%), Gaps = 21/312 (6%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+ GG++ ER+VSL SG+  A+ L   G  V   D++      +A  +PD+ + ++HG
Sbjct: 7   ILVVAGGLTHERDVSLRSGRRVANLLRQLGHTVEVCDLNSQFLPTVAEFEPDVVWPLIHG 66

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF---- 116
           + GEDG +Q +LEL+  PY  S   A  L+  K  +K + +  G+     I + +     
Sbjct: 67  SVGEDGSIQDLLELVGFPYVGSRAHACVLASSKPTAKSLATIEGITTPAWISLTQSLFRQ 126

Query: 117 ---------TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL 167
                     + S+  +S P ++KP  GGS+LG+  +  +  +   ++   ++ +GD ++
Sbjct: 127 VGAPAVLQAILQSKDNLSFPLIVKPADGGSALGLSKVSSEDELRSAMVD--AFAYGDTVM 184

Query: 168 IEQYVDGIELTCGVMGDA---SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           +EQ++ G E+   V+      +L   EI V     Y Y+ +Y++  S    PA++  D  
Sbjct: 185 VEQFIPGREIAVSVVDLDELYALPPVEI-VTDDGRYDYDARYNTGRSQFFAPARLTADET 243

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
            EVQR+A   H+ +G R +SR D +      +++ +++NV PGMT  S+FP+ A  AG S
Sbjct: 244 AEVQRVALEVHELLGLRHLSRVDLIL-GEDGQIYLIDVNVAPGMTDTSLFPQAAEAAG-S 301

Query: 285 FRELLLWMVEDA 296
           FR++L  +   A
Sbjct: 302 FRDILGEIAAFA 313


>gi|262039022|ref|ZP_06012356.1| D-alanine--D-alanine ligase [Leptotrichia goodfellowii F0264]
 gi|261746932|gb|EEY34437.1| D-alanine--D-alanine ligase [Leptotrichia goodfellowii F0264]
          Length = 309

 Score =  282 bits (723), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 90/302 (29%), Positives = 160/302 (52%), Gaps = 11/302 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS--VGLVLAHLKPDLAFNVL 58
           + V+ GG+S+ER+VSL++G+     L    ++V  I ++    V   L  L  D  +  L
Sbjct: 7   VGVISGGVSTERDVSLNTGREIVKNLNRGKYEVFDIVINSENEVFEKLKDLNLDFVYIAL 66

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
           HG FGEDG +QAILE L I Y   G+++S++ MDK  +K++V++ GV V   + V R   
Sbjct: 67  HGAFGEDGRIQAILESLGIAYGGPGVMSSSVCMDKELTKKIVATYGVRVAKGLSVRRGET 126

Query: 119 DS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
                    +    ++KP  GGSS+G+  ++ ++ +   L     +    + L+E+ + G
Sbjct: 127 ADFKTISEKLGKRIIVKPNSGGSSIGVSFVESEEQLQEALKLV--FTMDKEALVEEVLSG 184

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
            E++  V+        +I     D++ Y+ KYS   +   +  +   +I +E+ + A+ +
Sbjct: 185 TEISVPVIDGKVYPTLKIEAVAGDYFDYKSKYSDGGAREFV-FEFEKEIQQEIDKFAYDS 243

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           + A+ C G SR DF+   +  K +++E+N  PGMT  S+ P+  A  GYS+ E L  ++E
Sbjct: 244 YYAMKCEGFSRVDFMV--VGDKPYFMEVNTLPGMTAASLLPKSTASKGYSYSETLDLLIE 301

Query: 295 DA 296
            +
Sbjct: 302 AS 303


>gi|254967100|gb|ACT97592.1| putative D-alanine-D-alanine ligase [uncultured organism]
          Length = 334

 Score =  282 bits (723), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 89/328 (27%), Positives = 149/328 (45%), Gaps = 37/328 (11%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-----------------VDRSVG 43
           +A++ GG SSE +VS+ S +   S  +   + V  +D                 +D++  
Sbjct: 8   IAIVCGGDSSEHDVSMRSAQGLYSFFDKERYNVYIVDVKGLDWNVHFEDGTTAPIDKNDF 67

Query: 44  LVLAHLK---PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
             L + K    D A+  +HG  GE+G++Q   ELL IPY+ SG+L  A++ DK      +
Sbjct: 68  SFLVNGKLVVFDYAYITIHGTPGENGIMQGYFELLHIPYSTSGVLVEAMTFDKFVLNNYL 127

Query: 101 SSCGVPVCPSILVNRFTMDS------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154
              GV V  S+L+ R   D          I  P  +KP   GSS GI  +K    +   L
Sbjct: 128 RGFGVNVADSLLLRRGEEDKYSEAEIASRIGWPCFVKPAADGSSFGISKVKNADQLAPAL 187

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLN 210
               ++   D+++IE+Y+ G E++ G             TE+ V  ++F+ Y+ KY+   
Sbjct: 188 --RVAFMESDEVMIERYLKGTEISVGCYKTKNKSVVFPATEV-VTSNEFFDYDAKYN-GQ 243

Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK---VFWLEINVQPG 267
              + PA++  +  + V       +  + C GI R D++          +  LEIN  PG
Sbjct: 244 VEEITPARLNPETAERVAEETSKIYDILHCNGIIRIDYIISQDQNGRDVINMLEINSTPG 303

Query: 268 MTPVSIFPEMAAYAGYSFRELLLWMVED 295
           MT  S  P+    AG   +++L  ++E+
Sbjct: 304 MTATSFIPQQVRAAGLDIKDVLTDIIEN 331


>gi|326539003|gb|ADZ87218.1| D-alanine--D-alanine ligase [Brucella melitensis M5-90]
          Length = 348

 Score =  282 bits (722), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 94/347 (27%), Positives = 165/347 (47%), Gaps = 51/347 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           + VL GG S+E +VS+ S     +AL+ A ++   + V R+   +L              
Sbjct: 3   IVVLFGGRSAEHDVSVLSATNVMNALDPAKYEAVPVFVTRAGQWLLSRFVNGALEKLSSG 62

Query: 47  -----------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                     K D+ F VLHG  GEDG VQ + ++  +P    G
Sbjct: 63  AELCLVPGGCGRAIVVPDAGAPYEADKIDIIFPVLHGLHGEDGAVQGLAQVARVPLAGCG 122

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSL 139
           I  SA ++DK  +K++V+  G+    S+ + R  + +    +  +  P  IKP + GSS+
Sbjct: 123 IPGSANALDKDIAKRLVNEAGLSTAKSVTITREEVPAFSALEQALGLPIFIKPARQGSSV 182

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD--ASLDVT---EIAV 194
           G+  +  +      +  S  + + D+LL E+++   E+ CGV+ D   +L V+   EI  
Sbjct: 183 GVHKVVTEADYQAAM--SDGFIYDDKLLAEEFIQAREVECGVLEDEGGALFVSRAGEIVP 240

Query: 195 PKSD-FYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            +S  FYSY+ KY   + T +  PA++P  +  E++ +A  A + +GC  ++R DF    
Sbjct: 241 AESHCFYSYDAKYIDADGTEIKVPAELPEQVENEIRAIAAKAFRVLGCDSMARVDFFVTA 300

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
             R++   EIN  PG T +S++ ++ A +G S+ E++  +V      
Sbjct: 301 -DRRIVLNEINTIPGFTDMSMYSKVMAVSGVSYPEIINRLVAHGLAR 346


>gi|81427664|ref|YP_394661.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)
           [Lactobacillus sakei subsp. sakei 23K]
 gi|123564944|sp|Q38ZM8|DDL_LACSS RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|78609303|emb|CAI54349.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)
           [Lactobacillus sakei subsp. sakei 23K]
          Length = 350

 Score =  282 bits (722), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 96/342 (28%), Positives = 160/342 (46%), Gaps = 53/342 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID----------------------- 37
           + VL GG S+ER VSL+SG     AL+  G  V+ +D                       
Sbjct: 3   IVVLAGGRSTERNVSLTSGHKITHALQTKGHDVAFVDLFLGNELKDGATIDSLYSSDPVE 62

Query: 38  ----VDRSVGLVLAHLK--------------------PDLAFNVLHGNFGEDGLVQAILE 73
               +D  V       K                     D+ F  LHG  GE+G VQA+L+
Sbjct: 63  KDYDIDDEVLTDDDINKLREDGSTQLFGPNVLEICKTADIVFLALHGGDGENGKVQAVLD 122

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPL 133
           + EIPYT S  LA+ ++M K  SK+++    +P    +   R     +     P V+KP 
Sbjct: 123 VFEIPYTGSDTLAAGITMSKKVSKEILLFNNIPTARFVAAYRHQPMPEMPFEYPVVVKPS 182

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
            GGSS+G  ++  +  +   +  +  +   ++ LIE+++ G E + GV+ +  L   EI 
Sbjct: 183 NGGSSVGTHIVHNEAELKPAVEDALRF--DNEALIEEFIKGREFSLGVINEQPLPAIEIE 240

Query: 194 VPKSDFYSYELKYSSLNSTHV--LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
           V    +Y +E K+ + N+T     P  +P D+++ ++++A  A  A+G    +R DF + 
Sbjct: 241 V-NDGWYDFEHKFVTGNTTKFVTPPNNLPDDVHEAMKQMALDAMHALGLTNYARIDFFWS 299

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           P +  ++ +E N  PGMTP+S+ P+ A   G S+ +L   +V
Sbjct: 300 PETG-LYVIEGNTLPGMTPLSLIPQEAEVLGISYPDLCEMIV 340


>gi|326802988|ref|YP_004320806.1| D-ala D-ala ligase N-terminal domain protein [Aerococcus urinae
           ACS-120-V-Col10a]
 gi|326650248|gb|AEA00431.1| D-ala D-ala ligase N-terminal domain protein [Aerococcus urinae
           ACS-120-V-Col10a]
          Length = 356

 Score =  282 bits (722), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 80/341 (23%), Positives = 153/341 (44%), Gaps = 50/341 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           + +L GG S+E ++S+ + ++    +      +  + + ++   +               
Sbjct: 3   IVLLYGGQSAEHDISIMTAQSIIKHINYQKHTLLPVYISQANQWIKGPAIDRAPEADLPL 62

Query: 46  -----LAHLKPD----------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84
                L    P+                +AF  LHG  GEDG +Q + E L +PY  +G+
Sbjct: 63  RFNPELDANDPEHGDLVSPCQVFNGEEVIAFPALHGPHGEDGKIQGLFESLNVPYVGAGV 122

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---------ISPPYVIKPLKG 135
           L+SA  MDK+ SKQ+     +P  P   +  +  D +           +  P  +KP   
Sbjct: 123 LSSAAGMDKIISKQLFQQAQIPQVPFTALTHYEWDQERAKSLTRIEGELVYPIFVKPANL 182

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD--VTEIA 193
           GSS+GI      + +   +    ++N+  ++++EQ V+  E+   V+G+ +++  V    
Sbjct: 183 GSSVGISCANDREELIQAI--ELAFNYDRRVIVEQGVEAREVEVAVLGNDAIETSVAGEV 240

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
           V    FY+YE KY +      +PA +P +I  +++  A  A+ AI   G++R DF     
Sbjct: 241 VKSKSFYNYEEKYINNTVELAIPADLPGEIMDKIRAYAAKAYAAIDSSGLTRVDFFVT-H 299

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           +  ++  E+N  PG T  S++P +    G  + +LL  +++
Sbjct: 300 NMDIYINEVNTMPGFTQWSMYPSLWEATGIPYDQLLERLIQ 340


>gi|189464335|ref|ZP_03013120.1| hypothetical protein BACINT_00676 [Bacteroides intestinalis DSM
           17393]
 gi|189438125|gb|EDV07110.1| hypothetical protein BACINT_00676 [Bacteroides intestinalis DSM
           17393]
          Length = 324

 Score =  282 bits (722), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 88/323 (27%), Positives = 159/323 (49%), Gaps = 33/323 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40
           +A++ GG +SE +VSL S +   S ++   + +  +++                    D 
Sbjct: 5   IAIVCGGDTSEFQVSLRSAQGIYSFIDKEKYTLYIVEMHGLDWHVQLPDGNKAPIDRNDF 64

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           S  +    +  D A+  +HG  GEDG +Q   +LL IPY+  G+LA+AL+ DK    Q +
Sbjct: 65  SFQVDGKKVTFDFAYITIHGTPGEDGRLQGYFDLLHIPYSCCGVLAAALTYDKFACNQYL 124

Query: 101 SSCGVPVCPSILVNR----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
              GV +  S+++ +       D    I  P  IKP  GGSS G+  +K  + I   +++
Sbjct: 125 KVFGVRIAESLVLRQGQSISDEDVIEKIGLPCFIKPSLGGSSFGVTKVKTKEQIQPAIVK 184

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNST 212
             ++    ++L+E +++G E+TCG            +TE+ V +++F+ Y+ KY+    +
Sbjct: 185 --AFGEAQEVLVEAFMEGTEVTCGCYKTKKNSVVFPITEV-VTENEFFDYDAKYN-GQVS 240

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
            + PA+I  D+   +Q L    +  +G  GI R D++      K+  LE+N  PGMT  S
Sbjct: 241 EITPARISDDLTHRIQTLTSAIYDILGASGIIRVDYIITA-GDKINLLEVNTTPGMTATS 299

Query: 273 IFPEMAAYAGYSFRELLLWMVED 295
             P+    AG   ++++  ++E+
Sbjct: 300 FIPQQVRAAGLDIKDVMTDIIEN 322


>gi|33861862|ref|NP_893423.1| D-alanine--D-alanine ligase [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
 gi|39930839|sp|Q7V0F6|DDL_PROMP RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|33640230|emb|CAE19765.1| D-alanine--D-alanine ligase [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
          Length = 355

 Score =  282 bits (722), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 99/348 (28%), Positives = 163/348 (46%), Gaps = 54/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDA----GFKV---------SQIDVDRSVGLVLA 47
           + ++ GG S+E +VS+SS K    AL        F V           +D D+S+ L+  
Sbjct: 9   IGIIFGGESNEHDVSVSSAKTVFKALISKTNINRFWVKAFYINKHGVWLDNDQSLVLLKE 68

Query: 48  HLK-------------------------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
             K                          D+ F +LHG  GEDG +  +L+  + P    
Sbjct: 69  KRKNETIDKNQVFPKREINFLNTIEFQGIDIWFPLLHGVNGEDGAIHGLLKFTQKPIVGG 128

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSI-----------LVNRFTMDSQHLISPPYVIK 131
           GIL SAL MDK+  K++ S   +P    +           + N  +++    +  P  +K
Sbjct: 129 GILGSALGMDKILMKKIFSHLEIPQVNYLDIQNQDLSDDKVKNNLSVEIIEKLKLPVFVK 188

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSSLGI   K    I   L +  +W    +++IE+ +D  EL CG++G+  L  +E
Sbjct: 189 PANSGSSLGISKAKTRSEIIKALQK--AWEIDSRIVIEEGLDVRELECGIIGNLKLTASE 246

Query: 192 IAVPK--SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
           I      +D+Y Y+ KYS  N   ++PA I   I ++++ +A  + +A+   G +R DF 
Sbjct: 247 IGEVSYSTDWYDYDSKYSMDN-QIIIPADIDSQISEQIKDIAIRSCRALNIYGFARVDFF 305

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
            + +S K+F  EIN  PG T  S+FP +   +G +  +L+  +V+ +S
Sbjct: 306 LEKISNKIFLNEINTIPGFTSKSMFPMLWNASGLNIDQLVAKLVDISS 353


>gi|294852606|ref|ZP_06793279.1| D-alanine-D-alanine ligase [Brucella sp. NVSL 07-0026]
 gi|294821195|gb|EFG38194.1| D-alanine-D-alanine ligase [Brucella sp. NVSL 07-0026]
          Length = 348

 Score =  282 bits (722), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 95/347 (27%), Positives = 165/347 (47%), Gaps = 51/347 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           + VL GG S+E +VS+ S     +AL+ A ++   + V R+   +L              
Sbjct: 3   IVVLFGGRSAEHDVSVLSATNVMNALDPAKYEAVPVFVTRAGQWLLSRFVNGALEKPSSG 62

Query: 47  -----------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                     K D+ F VLHG  GEDG VQ + ++  +P    G
Sbjct: 63  AELCLVPGGCGRAIVVPDAGAPYEADKIDIIFPVLHGLHGEDGAVQGLAQVARVPLAGCG 122

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSL 139
           I  SA ++DK  +K++V+  G+    S+ + R  + +    +  +  P  IKP + GSS+
Sbjct: 123 IPGSANALDKDIAKRLVNEAGLSTAKSVTITRQEVPAFSALEQALGLPIFIKPARQGSSV 182

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD--ASLDVT---EIAV 194
           G+  I  +      +  S  + + D+LL E+++   E+ CGV+ D   +L V+   EI  
Sbjct: 183 GVHKIVTEADYQAAM--SDGFTYDDKLLAEEFIQAREVECGVLEDEGGALFVSRAGEIVP 240

Query: 195 PKSD-FYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            +S  FYSY+ KY   + T +  PA++P  +  E++ +A  A + +GC  ++R DF    
Sbjct: 241 AESHCFYSYDAKYIDADGTEIKVPAELPEQVENEIRAIAAKAFRVLGCDSMARVDFFVTA 300

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
             R++   EIN  PG T +S++ ++ A +G S+ E++  +V      
Sbjct: 301 -DRRIVLNEINTIPGFTDMSMYSKVMAVSGVSYPEIINRLVAHGLAR 346


>gi|21911403|gb|AAC23582.2| D-alanine:D-alanine ligase-related protein [Streptomyces
           toyocaensis]
          Length = 346

 Score =  282 bits (722), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 89/342 (26%), Positives = 147/342 (42%), Gaps = 45/342 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           + ++ GG S E  VS+ S +  A  L+   ++   I + +S    L              
Sbjct: 6   IGIVFGGRSEEHPVSIKSAREVARNLDLEKYEPFYIGITKSGAWKLCDGPDAEWEDGDCR 65

Query: 47  ---------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
                                + ++ D+   VLHG  GEDG +Q +LEL  IPY    I 
Sbjct: 66  PVVLSPDSDVHGLLVLEQGGCSTIRLDVVLPVLHGKLGEDGAMQGLLELSGIPYVGCDIQ 125

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145
           +SA+ MDK  +  VV + G+       V           + P  +KP + GSS G+  + 
Sbjct: 126 SSAVCMDKSLAYAVVRNAGIATPNFWTVAADETVDAARFTYPVFVKPARSGSSFGVTKVS 185

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYS 201
           +++ +   +   ++  +  ++LIE+ V G E+ C ++G        +V  IA+    F  
Sbjct: 186 REEEMSSAV--ETARQYDSKVLIEEAVPGSEIGCAILGTGTDLVVGEVDRIALSHGFFRI 243

Query: 202 YE---LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
           ++    +  S NS  ++PA IP      VQ  A   ++ +GCRGI+R D        +V 
Sbjct: 244 HQEDSPETGSENSIAIVPADIPEASRLRVQEEAKAVYRVLGCRGIARVDMFL-KEDGEVV 302

Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
             E+N  PG+T  S +P M A AG    E++   V  A   +
Sbjct: 303 LNEVNTLPGLTSYSRYPRMMAAAGLPMSEVIDLTVSLALTGK 344


>gi|255009929|ref|ZP_05282055.1| D-alanyl-alanine synthetase A [Bacteroides fragilis 3_1_12]
 gi|313147716|ref|ZP_07809909.1| D-Ala-D-Ala ligase [Bacteroides fragilis 3_1_12]
 gi|313136483|gb|EFR53843.1| D-Ala-D-Ala ligase [Bacteroides fragilis 3_1_12]
          Length = 324

 Score =  282 bits (722), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 88/322 (27%), Positives = 156/322 (48%), Gaps = 31/322 (9%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-----------------VDRSVG 43
           +A++ GG +SE  VSL S +   S ++   + +  ++                 VDR+  
Sbjct: 5   IAIVAGGDTSEIVVSLRSAQGIYSFIDKEKYNLYIVEMEGRRWEVQLPDGSKTPVDRNDF 64

Query: 44  LVL---AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
             +     +  D A+  +HG  GEDG +Q   +++ IPY+  G+LA+A++ DK    Q +
Sbjct: 65  SFMNGAEKVVFDFAYITIHGTPGEDGRLQGYFDMMRIPYSCCGVLAAAITYDKFVCNQYL 124

Query: 101 SSCGVPVCPSILVNR----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
            + GV +  S+L+ +       D    I  P  IKP  GGSS G+  +K  + I   + +
Sbjct: 125 KAFGVRISESLLLRQGQTVSDEDVIEKIGLPCFIKPNLGGSSFGVTKVKTREQIQPAIAK 184

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI---AVPKSDFYSYELKYSSLNSTH 213
             ++   ++++IE ++ G ELTCG        V       V  ++F+ Y+ KY+      
Sbjct: 185 --AFGEAEEVMIEAFMAGTELTCGCYKTKEKSVVFPLTEVVTHNEFFDYDAKYN-GQVDE 241

Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273
           + PA++  ++ K VQ L    +  +GC GI R D++      K+  LE+N  PGMT  S 
Sbjct: 242 ITPARVSEELTKRVQALTSAIYDILGCSGIIRVDYIITE-GEKINLLEVNTTPGMTATSF 300

Query: 274 FPEMAAYAGYSFRELLLWMVED 295
            P+    AG   ++++  ++E+
Sbjct: 301 IPQQVRAAGMDIKDVMTDIIEN 322


>gi|320450994|ref|YP_004203090.1| D-alanine--D-alanine ligase [Thermus scotoductus SA-01]
 gi|320151163|gb|ADW22541.1| D-alanine--D-alanine ligase [Thermus scotoductus SA-01]
          Length = 322

 Score =  282 bits (722), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 99/320 (30%), Positives = 158/320 (49%), Gaps = 33/320 (10%)

Query: 3   VLMGGISSEREVSLSSGKACAS----------------------ALEDAGFKVSQIDVDR 40
           ++ GG S E EVSL S                            A      KV+ I    
Sbjct: 8   LIAGGRSPEHEVSLLSAHGVLEHMPFATELAVIAKDGRWLLGEEAFAALRAKVAPIG-RH 66

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           +    L   + D+ F +LHG +GEDG +Q  LE+L  PY  +G+ ASAL MDK  SK+++
Sbjct: 67  AFPPPLDWSRYDVVFPLLHGRWGEDGTIQGFLEILGKPYVGAGVAASALCMDKDLSKRIL 126

Query: 101 SSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160
           +  G+PV P + + +          P + +KP   GSS+GI  +  +    L+   + ++
Sbjct: 127 AQAGIPVVPWVALYQGERPFIPFDPP-FFVKPANTGSSIGIRRV--EHYAELEEALAEAF 183

Query: 161 NHGDQLLIEQYVDG-IELTCGVMGD---ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216
            H  + ++EQ + G  EL  G++G+    +  V E+   ++ FY YE KY+   +  ++P
Sbjct: 184 RHDQKAVVEQALSGVRELEVGILGNIFGEASPVGEVRY-QAAFYDYETKYTPGRAELLIP 242

Query: 217 AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPE 276
           A +     + VQ LA  A++ +G RG++R+DF       +V+  EIN  PG TP S++P 
Sbjct: 243 APLDPGTQETVQELALKAYRLLGIRGMARADFFL--AEGEVYLNEINTIPGFTPTSMYPR 300

Query: 277 MAAYAGYSFRELLLWMVEDA 296
           + A  G  + ELL  +VE A
Sbjct: 301 LFAAGGLPYPELLRRLVELA 320


>gi|329956080|ref|ZP_08296851.1| D-ala D-ala ligase protein [Bacteroides clarus YIT 12056]
 gi|328524839|gb|EGF51893.1| D-ala D-ala ligase protein [Bacteroides clarus YIT 12056]
          Length = 324

 Score =  282 bits (721), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 89/322 (27%), Positives = 157/322 (48%), Gaps = 31/322 (9%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40
           +A++ GG +SE EVSL S +   S ++   + +  +++                    D 
Sbjct: 5   IAIVCGGDTSEFEVSLRSAQGIYSFIDKERYTLYIVEMQGPDWHVQLPDGTKAPVDRNDF 64

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           S  L  A +  D A+  +HG  GEDG +Q   ++L IPY+  G+LA+AL+ DK    Q +
Sbjct: 65  SFRLSGAKVVFDFAYITIHGTPGEDGRLQGYFDMLHIPYSCCGVLAAALTYDKFACNQYL 124

Query: 101 SSCGVPVCPSILVNR----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
            + GV +  S+L+ +       D    I  P  IKP  GGSS G+  +   + I   + +
Sbjct: 125 KTFGVRIADSLLLRQGQSVSDEDVIGKIGLPCFIKPSLGGSSFGVTKVNTKEQIQPAIAK 184

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV---TEIAVPKSDFYSYELKYSSLNSTH 213
           + +     ++L+E +++G+E+TCG        V       V  ++++ Y+ KY+   S  
Sbjct: 185 AFA--EAKEVLVEAFMEGMEITCGCYKTKEKSVVFPITEVVSHNEYFDYKAKYN-GESDE 241

Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273
           + PA+IP ++   VQ+L    +  +G  GI R D++      K+  LE+N  PGMT  S 
Sbjct: 242 ITPARIPDELRDRVQKLTSAIYDILGASGIIRVDYIITE-GEKINLLEVNTTPGMTATSF 300

Query: 274 FPEMAAYAGYSFRELLLWMVED 295
            P+    A    ++++  ++E+
Sbjct: 301 IPQQVRAANLDIKDVMTDIIEN 322


>gi|218281654|ref|ZP_03488055.1| hypothetical protein EUBIFOR_00622 [Eubacterium biforme DSM 3989]
 gi|218217261|gb|EEC90799.1| hypothetical protein EUBIFOR_00622 [Eubacterium biforme DSM 3989]
          Length = 358

 Score =  282 bits (721), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 88/339 (25%), Positives = 148/339 (43%), Gaps = 44/339 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           + V+ GG SSE  VSL S  +    +    ++++ I ++++    L              
Sbjct: 13  LGVVFGGQSSEYSVSLHSVTSFLRQIHADNYEMTLIGINKNGHFYLYNGDVDSIEHDTWE 72

Query: 47  ----------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84
                                   ++ D  F VLHG  GEDGL+Q +LEL+ I Y    +
Sbjct: 73  NEETCVSCAWVNGGIMPLDGSNKVIELDCVFPVLHGKNGEDGLIQGLLELMNIHYVGCDV 132

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-----QHLISPPYVIKPLKGGSSL 139
           ++SA+SMDK     +     +P    I +     +      Q  I  P++IKP   GSS 
Sbjct: 133 MSSAMSMDKEIMHILCKEAKIPCADYICLYANRENPTFEQIQEKIELPWIIKPCNAGSSY 192

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK--S 197
           G+  +   +        +  ++   ++L+E+ + G E+ C VMG+  +    I   +   
Sbjct: 193 GVHFVNNKEEFESACKDAFFYDGRGKILVEKVIKGFEIGCAVMGNEEIFTGSIDEIEITG 252

Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
            F+ +E KY    +    PA+I    +KE Q LA   + A+ C G++R D       ++V
Sbjct: 253 GFFDFEGKYEMKGAAIYCPARIDEKTFKEAQELARKTYIAMNCCGMARVDMFVTE-DKEV 311

Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              E+N  PG+T  S +P M   AG  F +L+  ++E A
Sbjct: 312 ILNELNTIPGLTATSRYPSMMKVAGIEFADLIDKLIELA 350


>gi|124515885|gb|EAY57394.1| D-alanine--D-alanine ligase [Leptospirillum rubarum]
          Length = 303

 Score =  282 bits (721), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 95/295 (32%), Positives = 147/295 (49%), Gaps = 6/295 (2%)

Query: 5   MGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGE 64
           MGG S E  VS  SGKA   AL   G++   ++    +   L    PD+ F   HG  GE
Sbjct: 1   MGGDSPEAAVSRMSGKAVLEALRSRGYEAIPVEAGPDLFHTLLRTSPDVCFLATHGGHGE 60

Query: 65  DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI 124
           +G +Q  LE+L IPYT SG+L SAL M K  S+ +    G+ V  ++ +      +   I
Sbjct: 61  NGALQGCLEVLGIPYTGSGVLGSALGMSKSASRALFRQGGLDVPETVAIESGERLTPDKI 120

Query: 125 SPPY--VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
             P   ++KP   GSS+G+  +     +P  LL++    H  ++L+E ++ G E+   ++
Sbjct: 121 PFPLPFMVKPESAGSSIGVTRVDHFPDLPQALLEAE--KHSSRILVEPFLPGREVQSAIL 178

Query: 183 GDASLDVTEIAVPKSD-FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241
               L   EI    S+ FY+Y  KY    S H+ PA +  D+   ++     A   +  R
Sbjct: 179 DGRYLGAIEIVPDSSEPFYTYASKYQKGKSRHIFPAPLTSDVASRLEEATLRAFGLLELR 238

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           G++R D L  P   +V  LE+N  PG+T  S+ PE+A   G SF +L+  ++  A
Sbjct: 239 GVARMDTLVLP-DGRVVVLEMNTLPGLTETSLVPEIARGCGLSFEDLVETILSSA 292


>gi|254967064|gb|ACT97570.1| putative D-alanyl-alanine synthetase A [uncultured organism]
          Length = 344

 Score =  282 bits (721), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 86/322 (26%), Positives = 155/322 (48%), Gaps = 31/322 (9%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40
           +A++ GG +SE  VSL S +   S ++   + +  +++                    D 
Sbjct: 5   IAIVAGGDTSEIVVSLRSAQGIYSFIDKEKYNLYIVEMEGRRWEVQLPDGNKVPVDRNDF 64

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           S       +  D A+  +HG  GEDG +Q   +++ IPY+  G+LA+A++ DK    Q +
Sbjct: 65  SFTNGTEKVVFDFAYITIHGTPGEDGRLQGYFDMMRIPYSCCGVLAAAITYDKFTCNQYL 124

Query: 101 SSCGVPVCPSILVNR----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
            + GV +  S+L+ +       +    I  P  IKP  GGSS G+  +K  + I   +++
Sbjct: 125 KAFGVRIAESLLLRQGQSVSDEEVVEKIGLPCFIKPSLGGSSFGVTKVKTKEQIQPAIVK 184

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP---KSDFYSYELKYSSLNSTH 213
             ++   +++++E ++DG ELTCG        V          ++F+ Y+ KY+      
Sbjct: 185 --AFGEAEEVIVEAFMDGTELTCGCYKTKEKSVIFPPTXXXTHNEFFDYDAKYN-GQVDE 241

Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273
           + PA+I  ++ K VQ L    +  +GC GI R D++      K+  LE+N  PGMT  S 
Sbjct: 242 ITPARISDELTKRVQMLTSAIYDILGCSGIIRVDYIITA-GEKLNLLEVNTTPGMTTTSF 300

Query: 274 FPEMAAYAGYSFRELLLWMVED 295
            P+    AG   ++++  ++E+
Sbjct: 301 IPQQVRAAGLDIKDVMTDIIEN 322


>gi|218131975|ref|ZP_03460779.1| hypothetical protein BACEGG_03598 [Bacteroides eggerthii DSM 20697]
 gi|217985851|gb|EEC52191.1| hypothetical protein BACEGG_03598 [Bacteroides eggerthii DSM 20697]
          Length = 324

 Score =  282 bits (721), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 89/322 (27%), Positives = 153/322 (47%), Gaps = 31/322 (9%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40
           +A+  GG +SE EVSL S +   S ++   + +  +++                    D 
Sbjct: 5   IAIACGGDTSEFEVSLRSAQGIYSFIDKEKYTLYIVEMHGLDWHVQLPDGTKTPVDRNDF 64

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           S  L    +  D  +  +HG  GEDG +Q  L++L IPY+  G+LA+AL+ DK    Q +
Sbjct: 65  SFRLGGEKVVFDFVYITIHGTPGEDGRLQGYLDMLHIPYSCCGVLAAALTYDKFACNQYL 124

Query: 101 SSCGVPVCPSILVNR----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
            + GV +  S+L+ +       D    I  P  IKP  GGSS G+  +K  + I   +  
Sbjct: 125 KAFGVRIADSLLLRQGQSVSDEDVIGKIGLPCFIKPSLGGSSFGVTKVKTREEIQPAI-- 182

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV---TEIAVPKSDFYSYELKYSSLNSTH 213
             ++    ++L+E ++ G E+TCG        V       V  ++++ Y+ KY+   S  
Sbjct: 183 EKAFKEAREVLVEAFMQGTEITCGCYKTKEKSVVFPITEVVSHNEYFDYKAKYN-GESDE 241

Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273
           + PA+IP ++   VQ+L    +  +G  GI R D++      K+  LE+N  PGMT  S 
Sbjct: 242 ITPARIPDELRDRVQKLTSAIYDILGAAGIIRVDYIITE-GEKINLLEVNTTPGMTATSF 300

Query: 274 FPEMAAYAGYSFRELLLWMVED 295
            P+    A    ++++  ++E+
Sbjct: 301 IPQQVRAANLDIKDVMTDIIEN 322


>gi|313157691|gb|EFR57102.1| D-ala D-ala ligase N-terminal domain protein [Alistipes sp. HGB5]
          Length = 328

 Score =  281 bits (720), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 91/327 (27%), Positives = 162/327 (49%), Gaps = 31/327 (9%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40
           +A++ GG S ERE++L S     SAL+   + ++ ID+                    D 
Sbjct: 6   IALMAGGDSPEREIALQSAAQIESALDHEKYDITVIDLHHRDWHYTAPDGRQWQVDKNDF 65

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           S+ +       D A  ++HG  GEDG +Q  L+++ +PY+   + +S ++ DK+ +K+ V
Sbjct: 66  SLTVEGERKVFDYALIIIHGTPGEDGRLQGYLDMMGVPYSSCSMTSSVITFDKVTTKRTV 125

Query: 101 SSCGVPVCPSILVNRFTMDSQHLI----SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
           +  G+ +   I + +        +      P  IKP   GSS G+  +     +   +  
Sbjct: 126 AGRGINLAREIFLCKGETADPDEVIAEFGLPLFIKPNASGSSFGVTKVHTRDEVLPAV-- 183

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVM---GDASLDVTEIAVPKSDFYSYELKYSSLNSTH 213
            +++   D++LIE+ ++G E+ CG+M   G   L      V K DF+ Y+ KY+   S  
Sbjct: 184 EAAFAQSDEVLIEECIEGREMGCGMMVAGGREYLFPITEIVSKKDFFDYQAKYTEGYSDE 243

Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273
           + PA+I  +I +E+ R+  +A++A  C G+ R DF+  P   K + +EIN  PGM+  SI
Sbjct: 244 ITPAQIAPEIAEELHRMTRIAYKACRCSGVVRVDFIVTP-EGKPYMIEINSIPGMSAGSI 302

Query: 274 FPEMAAYAGYSFRELLLWMVEDASCLR 300
            P+ A   G +  E+   ++ D +C +
Sbjct: 303 VPKQAKAMGMTLGEMFDLVIAD-TCRK 328


>gi|255536312|ref|YP_003096683.1| D-alanyl-alanine synthetase A [Flavobacteriaceae bacterium 3519-10]
 gi|255342508|gb|ACU08621.1| D-alanine--D-alanine ligase [Flavobacteriaceae bacterium 3519-10]
          Length = 339

 Score =  281 bits (720), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 97/328 (29%), Positives = 159/328 (48%), Gaps = 35/328 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           +AV+MGG S E  VSL SG+    +L+   + V ++ V +     L              
Sbjct: 17  VAVVMGGYSDEYVVSLKSGQLIYDSLDRDSYNVYKVIVLKDEWYFLDDREQKVPVNKADF 76

Query: 50  ----------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
                     K D+ FN++HG  GE+G +QA  + +   YT  G   SAL+ +K  +  V
Sbjct: 77  SVNLDSGFDVKFDVCFNIIHGKPGENGELQAYWDTIGQKYTGCGFYQSALTFNKKDTLAV 136

Query: 100 VSSCGVPVCPSILVNRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
           +S  G+P   S+ + +     +      +  P  +KP + GSSLGI  +K        + 
Sbjct: 137 LSKYGIPAAKSVYIRKGEAIDEDGIIEDLKLPLFVKPNQSGSSLGISKVKDKSEFQKAI- 195

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMG----DASLDVTEIAVPKSDFYSYELKYSSLNS 211
              ++   D++LIE ++DG+E++ GV+        L +TEI V   +F+ YE KY    S
Sbjct: 196 -DFAFEQDDEVLIESFLDGMEVSVGVVDFNGESIVLGITEI-VSHKEFFDYEAKYE-GAS 252

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271
             + PA+I  +  ++V+ +A  A+ ++G  G SRS+F+   +    + LE+N  PG +P 
Sbjct: 253 EEITPARIDDETRQKVEEIAKKAYNSLGMSGFSRSEFII--MGGTPYMLEMNTNPGFSPA 310

Query: 272 SIFPEMAAYAGYSFRELLLWMVEDASCL 299
           SI P+ A   G S ++L    VE A   
Sbjct: 311 SILPQQAKIYGISIKDLCGNEVEKALAK 338


>gi|260904755|ref|ZP_05913077.1| D-alanine/D-alanine ligase [Brevibacterium linens BL2]
          Length = 371

 Score =  281 bits (720), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 92/357 (25%), Positives = 154/357 (43%), Gaps = 64/357 (17%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           +AVL GG SSE  VS  +      A+ D  ++V  I + ++    +              
Sbjct: 10  VAVLFGGRSSEHAVSCVTAAGVIRAIADDAYRVLPIGITKAGVWRIVEDWSTMAFDPDNM 69

Query: 50  ----------------------------------KPDLAFNVLHGNFGEDGLVQAILELL 75
                                               D+ F +LHG +GEDG +Q + EL 
Sbjct: 70  PEVVDNGTEIIPPISAQGSPLLQRDAEGNYSELGSVDVYFPLLHGQYGEDGTLQGLFELS 129

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL--------ISPP 127
           +  +  SG+ ASA SMDK  +K +++  G+P CP  LV     ++           +  P
Sbjct: 130 DTAFVGSGVFASAASMDKHYTKSLMAHAGIPTCPWELVTETMWEADQAEAQDRITGLGLP 189

Query: 128 YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG---D 184
             +KP + GSS+G+  ++  + +   L   S++ H  ++++E  V G E+ C V+G   D
Sbjct: 190 VFVKPARAGSSMGVSRVESAEGLDQAL--RSAFEHDSKVIVEPQVVGREIECAVLGSVHD 247

Query: 185 ASLDVT---EIAVP-KSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
             + V+   EI V  +  FY +E KY +  ++    PA++       +Q L+    +   
Sbjct: 248 REVRVSFPGEIEVSGEHSFYDFEAKYLNLADAQLTCPARVDETTTARIQELSAQVFRLFD 307

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           C G+SR D        +V   EIN  PG TP S +P M + +G  +  L+  ++  A
Sbjct: 308 CTGLSRVDTFVTDA-GEVLINEINTLPGFTPTSAYPFMWSKSGIEYPALISELITIA 363


>gi|146319006|ref|YP_001198718.1| D-alanine-D-alanine ligase and related ATP-grasp enzymes
           [Streptococcus suis 05ZYH33]
 gi|145689812|gb|ABP90318.1| D-alanine-D-alanine ligase and related ATP-grasp enzymes
           [Streptococcus suis 05ZYH33]
          Length = 424

 Score =  281 bits (720), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 89/329 (27%), Positives = 152/329 (46%), Gaps = 41/329 (12%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV----------------- 45
           +L GG S+EREVS+ S ++   A+    F V    + ++   +                 
Sbjct: 26  LLYGGRSAEREVSVLSAESVMRAINYDKFFVKTYFISQTGDFIKTQEFSQTPSADEKLMT 85

Query: 46  ------LAHLKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
                    ++P        + F VLHG  GEDG +Q  LE+L +PY  + IL+S+++MD
Sbjct: 86  NATIVEEQKIRPSDIYEEKAVVFPVLHGPMGEDGSIQGFLEVLRMPYVGTNILSSSVAMD 145

Query: 93  KMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           K+ +K+V+ S G+   P + V           + +  ++ P  +KP   GSS+GI   + 
Sbjct: 146 KITTKRVLESAGISQVPYVAVIEGENIDDKIAEIEGKLTYPVFVKPANMGSSVGISKAED 205

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--DVTEIAVPKSDFYSYEL 204
              +   L    ++ +  ++L+EQ V+  E+  G++G+A +   +    V    FY Y  
Sbjct: 206 LAGLRKALDL--AFKYDSRVLVEQGVNAREIEVGLLGNADVKTKLPGEVVKNVAFYDYHA 263

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           KY        +PAKI   I   ++  A  A +AIG  G+S  DF     + ++F  E+N 
Sbjct: 264 KYIDNKIPMEIPAKIDESIMDIMRDNAAKAFRAIGGCGLSPCDFFLTE-NGEIFLNELNT 322

Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            PG T   ++P +    G  + EL+  +V
Sbjct: 323 MPGFTQWFMYPLLWDNMGLGYPELIEKLV 351


>gi|254495422|ref|ZP_05108346.1| D-alanine-D-alanine ligase [Polaribacter sp. MED152]
 gi|85819777|gb|EAQ40934.1| D-alanine-D-alanine ligase [Polaribacter sp. MED152]
          Length = 324

 Score =  281 bits (720), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 98/324 (30%), Positives = 167/324 (51%), Gaps = 34/324 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLA------------- 47
           +A++MGG SSE ++S+ SG      L+   + V ++ + +   +VL              
Sbjct: 5   IAIIMGGYSSEADISIKSGNVVFQNLDTNKYNVFRVHILKDKWVVLDESNAEYQINKDDF 64

Query: 48  -------HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
                  H+K D  FN +HGN GE+G++ + LELL IP+T +     AL+ +K  +  VV
Sbjct: 65  SCVINQNHIKFDCVFNAIHGNPGENGMILSYLELLNIPHTSAPFYQMALTFNKRDTLSVV 124

Query: 101 SSCGVPVCPSILVNRFTM----DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
              G+    SI +N+  +    + +  +  P  IKP   GSS GI     ++ I   +L+
Sbjct: 125 KEYGIKTAKSIYLNKGDVINTKEIKEKVGLPCFIKPNNAGSSYGISKAYSEEEIFHGILK 184

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNST 212
             ++N    +LIE +++G E++ GV+        L +TEI V ++DF+ YE KY    S 
Sbjct: 185 --AYNEDSAILIESFLEGTEVSVGVIEYENEIKVLPITEI-VSENDFFDYEAKYE-GKSQ 240

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
            + PA+I     K V+ +A   ++ +   G SR++++F  ++ + ++LEIN  PG+T  S
Sbjct: 241 EITPARITEQQQKRVEEVAQNVYKCLNMSGFSRAEYIF--VNNEPYFLEINTVPGLTEES 298

Query: 273 IFPEMAAYAGYSFRELLLWMVEDA 296
           I P+ A  AG S  +L    ++ A
Sbjct: 299 ILPQQAKEAGISLAQLFDNAIQMA 322


>gi|300781323|ref|ZP_07091177.1| D-alanine--D-alanine ligase [Corynebacterium genitalium ATCC 33030]
 gi|300533030|gb|EFK54091.1| D-alanine--D-alanine ligase [Corynebacterium genitalium ATCC 33030]
          Length = 354

 Score =  281 bits (720), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 93/346 (26%), Positives = 149/346 (43%), Gaps = 54/346 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +AV+ GG+SSE  +S  S  A  + L    +K+  + + +    V     P         
Sbjct: 7   LAVIYGGMSSEHSISCISAGAIMAELPKDKYKIFPVGITQDGVWVEGTTDPVGDSQLPSV 66

Query: 52  ------------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTH 81
                                         D  F VLHG +GEDG +Q +L+L  +PY  
Sbjct: 67  AGEREVALSVNPSRRGEFYDARTGEVLATIDAVFPVLHGTYGEDGTIQGLLDLAGVPYVG 126

Query: 82  SGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFTMDSQHLISPPYVIKPLKGGSS 138
            G+L+SA SMDK  +K V  S  VPV   +++          +  +  P  +KP +GGSS
Sbjct: 127 PGVLSSACSMDKQFTKIVARSADVPVTREVVLVDDEHLDDSDRDYLGLPVFVKPARGGSS 186

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK-- 196
           +GI  +     +  D     +  +  +++IE  + G E+  GV+   + D+      K  
Sbjct: 187 IGINKVDSWDQL--DDAVRFARLYDSKVIIEAELVGDEVEVGVIERPNGDLIASPPAKLN 244

Query: 197 ------SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
                   FY +E KY     T  +PA     +  +++ LA    +A+ CRG++R DF  
Sbjct: 245 GTSESEEGFYGFETKYLDDVVTATIPAGYDDVMNAKLEELAIRTFRALDCRGLARVDFFV 304

Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                     E+N  PG T +S+FP++   AG S+ ELL  ++  A
Sbjct: 305 TSEG--PMLNEVNTMPGFTSISMFPQVFQAAGMSYGELLETLIATA 348


>gi|257466679|ref|ZP_05630990.1| D-alanine--D-alanine ligase [Fusobacterium gonidiaformans ATCC
           25563]
 gi|315917832|ref|ZP_07914072.1| D-alanine-D-alanine ligase [Fusobacterium gonidiaformans ATCC
           25563]
 gi|313691707|gb|EFS28542.1| D-alanine-D-alanine ligase [Fusobacterium gonidiaformans ATCC
           25563]
          Length = 288

 Score =  281 bits (720), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 111/299 (37%), Positives = 173/299 (57%), Gaps = 14/299 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-SVGLVLAHLKPDLAFNVLH 59
           +AV MGG+SSE+EVS+ SG+A   +L+  G+    + + + ++         DLA+  LH
Sbjct: 3   IAVFMGGVSSEKEVSIRSGEAILESLQRQGYDAYGVVLTKENMISAFQDENYDLAYLALH 62

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G  GE+G +Q++LELL   YT SG+ ASA+SMDK+ +K++ S  GV +  +        +
Sbjct: 63  GGAGENGEIQSVLELLGKKYTGSGVAASAISMDKLLTKKIASLEGVRMAKTYS------N 116

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
              + S P ++KP K GSS+GI V    + +   L + S +      +IE+Y+ G ELT 
Sbjct: 117 VAEISSYPVMVKPSKDGSSVGIHVCNNQEEVEKALQEISGYA-----MIEEYIQGEELTV 171

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
           GV+   +L V +I    +D Y YE KY++  S H  PA+I    Y+E    A   H+A+G
Sbjct: 172 GVLNGKALGVLKIIPQAADIYDYESKYAAGGSIHEFPARIAKIAYEEAMVNAVKIHEALG 231

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
            +G+SRSDF+      +V++LE+N  PGMT  S+ P++A   GY+F ++   +VEDA  
Sbjct: 232 MKGVSRSDFIL--KDDQVYFLEVNACPGMTKTSLVPDLATLQGYTFDDITRMLVEDALA 288


>gi|229818288|ref|ZP_04448569.1| hypothetical protein BIFANG_03588 [Bifidobacterium angulatum DSM
           20098]
 gi|229784158|gb|EEP20272.1| hypothetical protein BIFANG_03588 [Bifidobacterium angulatum DSM
           20098]
          Length = 377

 Score =  281 bits (719), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 92/369 (24%), Positives = 159/369 (43%), Gaps = 76/369 (20%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           + VL GG + E  +S  S     +A++   F V  + + ++   ++    P         
Sbjct: 6   IMVLYGGRADEHSISCISTAGVLNAIDAERFDVVPVGITKTGQWIVGGEDPRSWSLDDGT 65

Query: 52  -----------------------------------------DLAFNVLHGNFGEDGLVQA 70
                                                    D  F VLHG +GEDG VQ 
Sbjct: 66  LPEVVATADSRAVTLDVSRGQDGFFADDPGQPDHVISLGHIDAVFPVLHGVYGEDGTVQG 125

Query: 71  ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--------FTMDSQH 122
           +LE++ +PY   G+ ASA  MDK  +K V+++ G+P  P I+V+         +    + 
Sbjct: 126 LLEMMGVPYVGCGVFASAACMDKHYTKIVLNAAGIPTAPGIMVDARHATGESVYDEVKKA 185

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW-----NHGDQLLIEQYVDGIEL 177
            ++ P  +KP + GSS G+  +++       +    +       H  ++L+EQ +D  E+
Sbjct: 186 KLAYPLFVKPSRAGSSFGVTKVEQADDEQAQIAALEAAVAEAGKHDWKVLVEQGIDAREI 245

Query: 178 TCGVMGDASLDVTEIAVP-----------KSDFYSYELKYSSLNSTHVL-PAKIPLDIYK 225
            C V+  A  D  E + P              FY ++ KY   +++HV  PA +P+ + +
Sbjct: 246 ECAVLCAAPGDEPEASWPGEIVLDHRDQGDDQFYDFDSKYMDSSASHVEVPANLPVSVLE 305

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285
           +V+ +A  A  A+   G+SR D    P    V   EIN  PG TP+S++P+    +G  +
Sbjct: 306 DVRDVARRAFAAVDGAGLSRVDTFVTP-DGTVMVNEINTMPGFTPISMYPKAWDASGIGY 364

Query: 286 RELLLWMVE 294
            EL+  ++E
Sbjct: 365 TELITRLIE 373


>gi|315227145|ref|ZP_07868932.1| D-alanine-D-alanine ligase [Parascardovia denticolens DSM 10105]
 gi|315119595|gb|EFT82728.1| D-alanine-D-alanine ligase [Parascardovia denticolens DSM 10105]
          Length = 405

 Score =  281 bits (719), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 93/373 (24%), Positives = 156/373 (41%), Gaps = 80/373 (21%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           + VL GG + E  +S  S  +     +   F+   I + +    ++  + P         
Sbjct: 30  IVVLYGGRADEHPISCISAGSVLREWDQEKFEAVPIGITKEGVWIVDGVDPRQWELGAQL 89

Query: 52  ---------------------------------------DLAFNVLHGNFGEDGLVQAIL 72
                                                  D  F VLHG +GEDG +Q +L
Sbjct: 90  PEVKEVPGSRRVVLDVSAGGNGFLARDGRTGAVESLGHVDAVFPVLHGPYGEDGTIQGLL 149

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------------ 120
           E++ +PY   G+LASA  MDK  +K ++ + G+PV P I V+  + DS            
Sbjct: 150 EMMGLPYVGCGVLASAACMDKHYTKVLLKAAGIPVAPGITVDTRSYDSAQGFDPQGKVLC 209

Query: 121 ----QHLISPPYVIKPLKGGSSLGIIVIK-----KDQSIPLDLLQSSSWNHGDQLLIEQY 171
               +  +  P  +KP + GSS G+  +       ++   L      +  H  ++L+E+ 
Sbjct: 210 DLVDEAGLRYPLFVKPSRAGSSFGVTKVDYKADATERQADLAAAVHEAARHDWRVLVEEG 269

Query: 172 VDGIELTCGVM----GDA-----SLDVTEIAVPKSDFYSYELKYSSLNSTHVL-PAKIPL 221
           +   E+ C V+    GD        ++         FY ++ KY   +++HV  PAK+P 
Sbjct: 270 IKAREIECAVLAPRHGDKPRTSWPGEIVLDEPGNGAFYDFDSKYMDSSASHVEVPAKLPQ 329

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYA 281
           +  +EV+R+A  A  A+   G+SR D         V   EIN  PG TP+S++ +     
Sbjct: 330 ETLQEVRRVAARAFIAVDGDGLSRVDTFVTE-EGTVIVNEINTLPGFTPISMYSKAWEAT 388

Query: 282 GYSFRELLLWMVE 294
           G S+REL+  ++E
Sbjct: 389 GVSYRELITTLIE 401


>gi|257452941|ref|ZP_05618240.1| D-alanine--D-alanine ligase [Fusobacterium sp. 3_1_5R]
 gi|317059482|ref|ZP_07923967.1| D-alanine-D-alanine ligase [Fusobacterium sp. 3_1_5R]
 gi|313685158|gb|EFS21993.1| D-alanine-D-alanine ligase [Fusobacterium sp. 3_1_5R]
          Length = 288

 Score =  281 bits (719), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 110/299 (36%), Positives = 172/299 (57%), Gaps = 14/299 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59
           +AV MGG+SSE+EVS+ SG+A   +L+  G+    + +  +++       + DLA+  LH
Sbjct: 3   IAVFMGGVSSEKEVSIRSGEAILESLQRQGYDAYGVVLTEKNMISAFQEEQYDLAYLALH 62

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G  GE+G +Q++LELL   YT SG+ ASA+SMDK+ +K++ S  GV +  +         
Sbjct: 63  GGAGENGEIQSVLELLGKKYTGSGVAASAISMDKLLTKKIASLEGVRMAKTFT------T 116

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
              +   P ++KP K GSS+GI V    + +   L + S +      +IE+Y+ G ELT 
Sbjct: 117 VAEISRYPVMVKPSKDGSSVGIHVCNNQEEVEKALQEISGYA-----MIEEYIQGEELTV 171

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
           GV+   +L V +I    +D Y YE KY++  S H  PA+I    Y+E    A   H+A+G
Sbjct: 172 GVLNGKALGVLKIIPQAADIYDYESKYAAGGSIHEFPARIAKIAYEEAMVNAVKIHEALG 231

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
            +G+SRSDF+      +V++LE+N  PGMT  S+ P++A   GY+F ++   +VEDA  
Sbjct: 232 MKGVSRSDFIL--KDDQVYFLEVNACPGMTKTSLVPDLATLQGYTFDDITRILVEDALA 288


>gi|281356209|ref|ZP_06242702.1| D-alanine/D-alanine ligase [Victivallis vadensis ATCC BAA-548]
 gi|281317578|gb|EFB01599.1| D-alanine/D-alanine ligase [Victivallis vadensis ATCC BAA-548]
          Length = 702

 Score =  281 bits (719), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 96/297 (32%), Positives = 155/297 (52%), Gaps = 8/297 (2%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62
           +L+GG S+ERE+SL SG A A AL + GF V+  DV     L+    + D+ + VLHG F
Sbjct: 319 LLLGGASNEREISLKSGSAVAQALRNGGFDVTVTDVTE-CRLLPEMREADVVYPVLHGGF 377

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
           GEDG +Q ++E   + +  SG  AS L+MDK+ +K+++   G+P     +V R   +   
Sbjct: 378 GEDGRIQKVMEEAGLRFVGSGSAASLLTMDKIATKRLLDRLGIPTAKWSVVTRDRRELPQ 437

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            +  P ++K    GS+ GI+ +++ +     L +  +     +LL+E+Y+DGIE+T  ++
Sbjct: 438 NLKLPLILKVPMEGSTFGIVKVERAEEWDAALEKEFA--MAGELLVEEYIDGIEITVPIV 495

Query: 183 GDASLDVTEIAVPKSDFYSYELK--YSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIG 239
               L   EI  P   FY Y+ K  Y   ++ +  PA+ +  +   +  R A   +   G
Sbjct: 496 NGEVLPAIEIKSPH-GFYDYDAKYVYKDGHTEYFCPARSLSAEQVADASRQAVKFYLGAG 554

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           CR I R DF+        + LE N  PG T  S+ P+ A  +G SF ++   +V  A
Sbjct: 555 CRDILRVDFIV-GKDGVPYMLEGNSIPGCTATSLVPKAAKVSGISFEKMTATLVYAA 610


>gi|294787296|ref|ZP_06752549.1| D-alanine--D-alanine ligase [Parascardovia denticolens F0305]
 gi|294484652|gb|EFG32287.1| D-alanine--D-alanine ligase [Parascardovia denticolens F0305]
          Length = 400

 Score =  281 bits (719), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 93/373 (24%), Positives = 156/373 (41%), Gaps = 80/373 (21%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           + VL GG + E  +S  S  +     +   F+   I + +    ++  + P         
Sbjct: 25  IVVLYGGRADEHPISCISAGSVLREWDQEKFEAVPIGITKEGVWIVDGVDPRQWELGAQL 84

Query: 52  ---------------------------------------DLAFNVLHGNFGEDGLVQAIL 72
                                                  D  F VLHG +GEDG +Q +L
Sbjct: 85  PEVKEVPGSRRVVLDVSAGGNGFLARDGRTGAVESLGHVDAVFPVLHGPYGEDGTIQGLL 144

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------------ 120
           E++ +PY   G+LASA  MDK  +K ++ + G+PV P I V+  + DS            
Sbjct: 145 EMMGLPYVGCGVLASAACMDKHYTKVLLKAAGIPVAPGITVDTRSYDSAQGFDPQGKVLC 204

Query: 121 ----QHLISPPYVIKPLKGGSSLGIIVIK-----KDQSIPLDLLQSSSWNHGDQLLIEQY 171
               +  +  P  +KP + GSS G+  +       ++   L      +  H  ++L+E+ 
Sbjct: 205 DLVDEAGLRYPLFVKPSRAGSSFGVTKVDYKADATERQADLAAAVHEAARHDWRVLVEEG 264

Query: 172 VDGIELTCGVM----GDA-----SLDVTEIAVPKSDFYSYELKYSSLNSTHVL-PAKIPL 221
           +   E+ C V+    GD        ++         FY ++ KY   +++HV  PAK+P 
Sbjct: 265 IKAREIECAVLAPRHGDKPRTSWPGEIVLDEPGNGAFYDFDSKYMDSSASHVEVPAKLPQ 324

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYA 281
           +  +EV+R+A  A  A+   G+SR D         V   EIN  PG TP+S++ +     
Sbjct: 325 ETLQEVRRVAARAFIAVDGDGLSRVDTFVTE-EGTVIVNEINTLPGFTPISMYSKAWEAT 383

Query: 282 GYSFRELLLWMVE 294
           G S+REL+  ++E
Sbjct: 384 GVSYRELITTLIE 396


>gi|254283481|ref|ZP_04958449.1| D-alanine--D-alanine ligase [gamma proteobacterium NOR51-B]
 gi|219679684|gb|EED36033.1| D-alanine--D-alanine ligase [gamma proteobacterium NOR51-B]
          Length = 311

 Score =  281 bits (719), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 103/294 (35%), Positives = 152/294 (51%), Gaps = 8/294 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG ++ER VSL SG+  A+ L   G +V ++D   + G        D AFN+LHG
Sbjct: 11  LAVLLGGTAAERSVSLQSGENVATTLATTGAEVRRVDTADN-GWQQQLKGVDFAFNLLHG 69

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG VQ  LE   IPY+ SG+L SAL+MDK R+K + +  G+P    +L+NR   + 
Sbjct: 70  PGGEDGTVQGFLEYEGIPYSGSGVLGSALTMDKARTKWLWAGIGLPTPEFLLLNR-DSEW 128

Query: 121 QHLIS--PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           Q +I    P  +KP + GSS+G+        +      ++S  +G  ++ EQY++G E T
Sbjct: 129 QAIIDALGPVFVKPTREGSSIGMSHAASASELADAYDNAAS--YGTAVMAEQYIEGSEYT 186

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             ++GD +L    I    + FY +E KY S ++    P+ +       + +LA  A  A 
Sbjct: 187 VAILGDRALPSIRIET-DAAFYDFEAKYVSEDTRFFCPSGLAEQDEAALAQLALDAFAAT 245

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           G     R D      +     LE+N  PGMT  S+ P  A  AG S  ELL  +
Sbjct: 246 GASVWGRVDV-LRRRNGDWQLLEVNTVPGMTSHSLVPMAAKQAGLSMAELLAAI 298


>gi|19704786|ref|NP_604348.1| D-alanine--D-alanine ligase [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
 gi|39930908|sp|Q8RDQ4|DDL_FUSNN RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|19715123|gb|AAL95647.1| D-alanine--D-alanine ligase [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
          Length = 287

 Score =  281 bits (719), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 107/296 (36%), Positives = 163/296 (55%), Gaps = 15/296 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59
           +AV MGG SSE+E+SL SG+A   +L+  G+    + +D R+          DLA+ VLH
Sbjct: 3   IAVFMGGTSSEKEISLKSGEAVLESLQKQGYDAYGVILDERNQVSAFVDNDYDLAYLVLH 62

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G  GE+G +QA+L++L   YT SG+LASA++MDK ++KQ+  S G+    S         
Sbjct: 63  GGNGENGKIQAVLDILGKKYTGSGVLASAITMDKDKTKQIAQSVGIKTPKSY------RP 116

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
            + +   P +IKP+  GSS G+ +    +     + + +      + +IE Y+ G ELT 
Sbjct: 117 VEEIERFPVIIKPVDEGSSKGLFLCNNKEEAEEAVKKLA------KPIIEDYIIGEELTV 170

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
           GV+   +L V +I       Y Y+ KY+   S H  PAKI    YKE  ++A   H   G
Sbjct: 171 GVLNGEALGVLKIIPQADVLYDYDSKYAKGGSVHEFPAKIENKSYKEAMKIAEKIHSEFG 230

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
            +GISRSDF+      ++++LE+N  PGMT  S+ P++A   GYSF +++   VE 
Sbjct: 231 MKGISRSDFILSE--GELYFLEVNSSPGMTKTSLIPDLATLKGYSFDDVVRITVET 284


>gi|53711781|ref|YP_097773.1| D-alanyl-alanine synthetase A [Bacteroides fragilis YCH46]
 gi|81383704|sp|Q64Z37|DDL_BACFR RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|52214646|dbj|BAD47239.1| D-alanine--D-alanine ligase [Bacteroides fragilis YCH46]
          Length = 324

 Score =  281 bits (719), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 88/322 (27%), Positives = 157/322 (48%), Gaps = 31/322 (9%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-----------------VDRSVG 43
           +A++ GG +SE  VSL S +   S ++   + +  ++                 VDR+  
Sbjct: 5   IAIVAGGDTSEIVVSLRSAQGIYSFIDKEKYNLYIVEMEGRRWEVQLPDGSKTPVDRNDF 64

Query: 44  LVL---AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
             +     +  D A+  +HG  GEDG +Q   +++ IPY+  G+LA+A++ DK    Q +
Sbjct: 65  SFINGAEKVVFDFAYITIHGTPGEDGRLQGYFDMMRIPYSCCGVLAAAITYDKFVCNQYL 124

Query: 101 SSCGVPVCPSILVNR----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
            + GV +  S+L+ +       D    I  P  IKP  GGSS G+  +K  + I   + +
Sbjct: 125 KAFGVRISESLLLRQGQAVSDEDVVEKIGLPCFIKPNLGGSSFGVTKVKTREQIQPAIAK 184

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI---AVPKSDFYSYELKYSSLNSTH 213
             +++  ++++IE ++ G ELTCG        V       V  ++F+ Y+ KY+      
Sbjct: 185 --AFSEAEEVMIEAFMGGTELTCGCYKTKEKSVVFPLTEVVTHNEFFDYDAKYN-GQVDE 241

Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273
           + PA+I  ++ + VQ L    +  +GC GI R D++      K+  LE+N  PGMT  S 
Sbjct: 242 ITPARISEELTRRVQTLTSAIYDILGCSGIIRVDYIITE-GEKINLLEVNTTPGMTATSF 300

Query: 274 FPEMAAYAGYSFRELLLWMVED 295
            P+    AG   ++++  ++E+
Sbjct: 301 IPQQVRAAGLDIKDVMTDIIEN 322


>gi|297171881|gb|ADI22869.1| D-alanine-D-alanine ligase and related ATP-grasp enzymes
           [uncultured gamma proteobacterium HF0500_32L01]
          Length = 281

 Score =  281 bits (719), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 83/262 (31%), Positives = 144/262 (54%), Gaps = 15/262 (5%)

Query: 50  KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109
           + D+ F +LHG +GEDG VQ +LEL  +PY  +G+ ASA+ MDK  ++ V S+ G+P   
Sbjct: 12  EFDVVFPLLHGPYGEDGTVQGLLELAGVPYVGAGVAASAVGMDKELARTVFSAVGLPQTR 71

Query: 110 SILVNRFTM---------DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160
           S++++R            + +   + P  +KP   GSS+GI  +     +   L  +   
Sbjct: 72  SVVIHRSCWRGSPGQVVEEVEREFNYPLFVKPASLGSSVGISKVHDRNQLIEGLNGAGI- 130

Query: 161 NHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIA--VPKSDFYSYELKYSSLNSTHVLPA 217
            +  ++LIE  V+   E+ C V+G  + +V+ +   VP ++FY Y  KY    +T ++PA
Sbjct: 131 -YDTKILIEVAVEAAREIECAVLGGENPEVSGVGEIVPGAEFYDYRTKYIDDCATLIIPA 189

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
            +P     ++Q ++  A +AI C G++R DFL      ++F  EIN  PG TP+S++P++
Sbjct: 190 DLPEATVSQIQEMSIRAFRAIDCSGLARVDFLIS-QDGEIFLNEINTMPGFTPISMYPKL 248

Query: 278 AAYAGYSFRELLLWMVEDASCL 299
              AG S+ +L+  +++ A   
Sbjct: 249 WEEAGLSYPDLIDKLIQLALAR 270


>gi|296327762|ref|ZP_06870301.1| D-alanine--D-alanine ligase [Fusobacterium nucleatum subsp.
           nucleatum ATCC 23726]
 gi|296155109|gb|EFG95887.1| D-alanine--D-alanine ligase [Fusobacterium nucleatum subsp.
           nucleatum ATCC 23726]
          Length = 287

 Score =  281 bits (719), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 107/296 (36%), Positives = 163/296 (55%), Gaps = 15/296 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59
           +AV MGG SSE+E+SL SG+A   +L+  G+    + +D R+          DLA+ VLH
Sbjct: 3   IAVFMGGTSSEKEISLKSGEAVLESLQKQGYDAYGVILDERNQVSAFVDNDYDLAYLVLH 62

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G  GE+G +QA+L++L   YT SG+LASA++MDK ++KQ+  S G+    S         
Sbjct: 63  GGNGENGKIQAVLDILGKKYTGSGVLASAITMDKDKTKQIAQSVGIKTPKSY------RT 116

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
            + +   P +IKP+  GSS G+ +    +     + + +      + +IE Y+ G ELT 
Sbjct: 117 VEEIERFPVIIKPVDEGSSKGLFLCNNKEEAEEAVKKLA------KPIIEDYIIGEELTV 170

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
           GV+   +L V +I       Y Y+ KY+   S H  PAKI    YKE  ++A   H   G
Sbjct: 171 GVLNGEALGVLKIIPQADVLYDYDSKYAKGGSVHEFPAKIENKSYKEAMKIAEKIHSEFG 230

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
            +GISRSDF+      ++++LE+N  PGMT  S+ P++A   GYSF +++   VE 
Sbjct: 231 MKGISRSDFILSE--GELYFLEVNSSPGMTKTSLIPDLATLKGYSFDDVVRITVET 284


>gi|237715323|ref|ZP_04545804.1| D-alanyl-alanine synthetase A [Bacteroides sp. D1]
 gi|237719674|ref|ZP_04550155.1| D-alanyl-alanine synthetase A [Bacteroides sp. 2_2_4]
 gi|262405164|ref|ZP_06081714.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294643536|ref|ZP_06721342.1| D-ala D-ala ligase N-terminal domain protein [Bacteroides ovatus SD
           CC 2a]
 gi|294807043|ref|ZP_06765862.1| D-ala D-ala ligase N-terminal domain protein [Bacteroides
           xylanisolvens SD CC 1b]
 gi|298482427|ref|ZP_07000613.1| D-alanine--D-alanine ligase [Bacteroides sp. D22]
 gi|229444632|gb|EEO50423.1| D-alanyl-alanine synthetase A [Bacteroides sp. D1]
 gi|229450943|gb|EEO56734.1| D-alanyl-alanine synthetase A [Bacteroides sp. 2_2_4]
 gi|262356039|gb|EEZ05129.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292641111|gb|EFF59323.1| D-ala D-ala ligase N-terminal domain protein [Bacteroides ovatus SD
           CC 2a]
 gi|294445742|gb|EFG14390.1| D-ala D-ala ligase N-terminal domain protein [Bacteroides
           xylanisolvens SD CC 1b]
 gi|295088098|emb|CBK69621.1| D-alanine--D-alanine ligase [Bacteroides xylanisolvens XB1A]
 gi|298271406|gb|EFI12981.1| D-alanine--D-alanine ligase [Bacteroides sp. D22]
          Length = 324

 Score =  281 bits (719), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 88/322 (27%), Positives = 155/322 (48%), Gaps = 31/322 (9%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40
           +A++ GG +SE  VSL S +   S ++   + +  +++                    D 
Sbjct: 5   IAIVAGGDTSEIVVSLRSAQGIYSFIDKEKYNLYIVEMEGRRWEVQLPDGNKVPVDRNDF 64

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           S       +  D A+  +HG  GEDG +Q   +++ IPY+  G+LA+A++ DK    Q +
Sbjct: 65  SFTNGTEKVVFDFAYITIHGTPGEDGRLQGYFDMMRIPYSCCGVLAAAITYDKFTCNQYL 124

Query: 101 SSCGVPVCPSILVNR----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
            + GV +  S+L+ +       +    I  P  IKP  GGSS G+  +K  + I   +++
Sbjct: 125 KAFGVRIAESLLLRQGQSISDEEVVEKIGLPCFIKPSLGGSSFGVTKVKTKEQIQPAIVK 184

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA---VPKSDFYSYELKYSSLNSTH 213
             ++    ++L+E ++DG ELTCG        V       V  ++F+ Y+ KY+      
Sbjct: 185 --AFGEAQEVLVEAFMDGTELTCGCYKTKEKTVIFPPTEVVTHNEFFDYDAKYN-GQVDE 241

Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273
           + PA+I  ++ K VQ L    +  +GC GI R D++      K+  LE+N  PGMT  S 
Sbjct: 242 ITPARISDELTKRVQMLTSAIYDILGCSGIIRVDYIVTA-GEKLNLLEVNTTPGMTTTSF 300

Query: 274 FPEMAAYAGYSFRELLLWMVED 295
            P+    AG   ++++  ++E+
Sbjct: 301 IPQQVRAAGLDIKDVMTDIIEN 322


>gi|124023693|ref|YP_001018000.1| D-alanyl-alanine synthetase A [Prochlorococcus marinus str. MIT
           9303]
 gi|166198499|sp|A2CB75|DDL_PROM3 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|123963979|gb|ABM78735.1| D-alanine--D-alanine ligase [Prochlorococcus marinus str. MIT 9303]
          Length = 353

 Score =  281 bits (719), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 94/346 (27%), Positives = 156/346 (45%), Gaps = 52/346 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDA----GFKVSQIDVDRSVGL--------VLAH 48
           + V+ GG S E  VS+ S      AL        F+V  I +D+            VL  
Sbjct: 8   VGVVFGGASEEHAVSIRSAITVVGALRSEVNNNRFEVIAIYIDQRGRWWPAGVAEAVLKQ 67

Query: 49  LKP-------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
            +P                          + + VLHG  GEDG VQ +  L+  P+  SG
Sbjct: 68  GQPAKPEQLSTPLAPQGFTKLPEGSERVQVWYPVLHGPNGEDGTVQGLFTLMGQPFVGSG 127

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-----------DSQHLISPPYVIKP 132
           +L SALSMDK+  K   ++ G+P  P   V+   +           + +  +  P  +KP
Sbjct: 128 VLGSALSMDKLAMKAAFAAAGLPQVPYFAVDAADLLDTESRQGVAKNLEAKLKYPCFVKP 187

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--DVT 190
              GSS+GI   +    + + L +++S +   ++++EQ V   EL C V+G   L   V 
Sbjct: 188 ANLGSSVGISKAQNRNELLIGLDKAASLDR--RIVVEQGVSARELECAVLGKRELQTSVV 245

Query: 191 EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
                 +D+Y Y+ KYS   S  ++PA +P  +  +++ LA  A + +   G++R DF +
Sbjct: 246 GEICFDADWYDYDTKYSENCSHTLIPAPLPEGVEAQIRTLALQACRCVAAHGMARVDFFY 305

Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +    +++  EIN  PG T  S++P +   +G +  EL+  +V  A
Sbjct: 306 NAARNEIWLNEINTLPGFTSQSMYPMLWEASGVTLEELVSQLVITA 351


>gi|254967057|gb|ACT97566.1| putative D-alanyl-alanine synthetase A [uncultured organism]
          Length = 324

 Score =  281 bits (719), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 90/322 (27%), Positives = 157/322 (48%), Gaps = 31/322 (9%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40
           +A++ GG +SE EVSL S +   S ++   + +  +++                    D 
Sbjct: 5   IAIVCGGDTSEFEVSLRSAQGIYSFIDKERYTLYIVEMRGTDWHVQLPDGTKTPVDRNDF 64

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           S  L  A +  D A+  +HG  GEDG +Q   ++L IPY+  G+LA+AL+ DK    Q +
Sbjct: 65  SFRLDGAKVVFDFAYITIHGTPGEDGRLQGYFDMLHIPYSCCGVLAAALTYDKFACNQYL 124

Query: 101 SSCGVPVCPSILVNR----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
            + GV +  S+L+ +       D    I  P  IKP  GGSS G+  +   + I   + +
Sbjct: 125 KAFGVRIADSLLLRQGQSVSDEDVIGKIGLPCFIKPSLGGSSFGVTKVNVKEQIHPAIAK 184

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV---TEIAVPKSDFYSYELKYSSLNSTH 213
             ++    ++L+E ++DG+E+TCG        V       V  ++++ Y+ KY+   S  
Sbjct: 185 --AFAEAKEVLVEAFMDGMEITCGCYKTKEKSVVFPITEVVSHNEYFDYKAKYN-GESDE 241

Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273
           + PA+IP ++   VQ+L    +  +G  GI R D++      K+  LE+N  PGMT  S 
Sbjct: 242 ITPARIPDELRDRVQKLTSAIYDILGASGIIRVDYIITE-GEKINLLEVNTTPGMTATSF 300

Query: 274 FPEMAAYAGYSFRELLLWMVED 295
            P+    A    ++++  ++E+
Sbjct: 301 IPQQVRAANLEIKDVMTDIIEN 322


>gi|327200743|pdb|3R23|A Chain A, Crystal Structure Of D-Alanine--D-Alanine Ligase From
           Bacillus Anthracis
 gi|327200744|pdb|3R23|B Chain B, Crystal Structure Of D-Alanine--D-Alanine Ligase From
           Bacillus Anthracis
 gi|327533810|pdb|3R5X|A Chain A, Crystal Structure Of D-Alanine--D-Alanine Ligase From
           Bacillus Anthracis Complexed With Atp
 gi|327533811|pdb|3R5X|B Chain B, Crystal Structure Of D-Alanine--D-Alanine Ligase From
           Bacillus Anthracis Complexed With Atp
 gi|327533812|pdb|3R5X|C Chain C, Crystal Structure Of D-Alanine--D-Alanine Ligase From
           Bacillus Anthracis Complexed With Atp
 gi|327533813|pdb|3R5X|D Chain D, Crystal Structure Of D-Alanine--D-Alanine Ligase From
           Bacillus Anthracis Complexed With Atp
          Length = 307

 Score =  281 bits (719), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 83/303 (27%), Positives = 150/303 (49%), Gaps = 9/303 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+ GG+SSE++VS+ +G    + L+   +++  I ++    L+      D A   LHG
Sbjct: 6   IGVIXGGVSSEKQVSIXTGNEXIANLDKNKYEIVPITLNEKXDLIEKAKDIDFALLALHG 65

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117
            +GEDG VQ  LE L IPY+ S  L+S +  DK  SK+++   G+     I + +     
Sbjct: 66  KYGEDGTVQGTLESLGIPYSGSNXLSSGICXDKNISKKILRYEGIETPDWIELTKXEDLN 125

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            D    +  P V+KP  GGSS+G+ ++     +   L     W    +++IE+Y+ G E+
Sbjct: 126 FDELDKLGFPLVVKPNSGGSSVGVKIVYDKDELISXLETVFEW--DSEVVIEKYIKGEEI 183

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC +     L +  I    ++F+ Y  KY   ++   +  ++P ++ + V + +   ++A
Sbjct: 184 TCSIFDGKQLPIISIR-HAAEFFDYNAKYDDASTIEEV-IELPAELKERVNKASLACYKA 241

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           + C   +R D          +  E+N  PG T  S+ P+ A  AG  + +LL  ++E + 
Sbjct: 242 LKCSVYARVDXXV--KDGIPYVXEVNTLPGXTQASLLPKSADAAGIHYSKLLDXIIETSL 299

Query: 298 CLR 300
            +R
Sbjct: 300 RVR 302


>gi|258651717|ref|YP_003200873.1| D-alanine/D-alanine ligase [Nakamurella multipartita DSM 44233]
 gi|258554942|gb|ACV77884.1| D-alanine/D-alanine ligase [Nakamurella multipartita DSM 44233]
          Length = 367

 Score =  281 bits (719), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 92/357 (25%), Positives = 160/357 (44%), Gaps = 60/357 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           +AV+ GG S E  VS  S     + ++   F V+ + +  +   +               
Sbjct: 8   VAVVFGGRSGEHPVSCISAAGVLANIDTDLFDVTAVGITPAGRWLQMDPAAIPTTGGPTL 67

Query: 46  -LAHLKPDLAFNV----------------------------LHGNFGEDGLVQAILELLE 76
                   +A  V                            LHG +GEDG +Q +LEL  
Sbjct: 68  PEVSTGSAVALPVDPTAAALVSIDPSVDRSAVVDVEVVFPVLHGPYGEDGTIQGLLELAG 127

Query: 77  IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF----TMDSQHLISPPYVIKP 132
           +PY  +G+LASA +MDK  +K+++++ G+PV   +++       T + +  +  P  +KP
Sbjct: 128 VPYVGAGVLASAAAMDKEFTKKLLAAEGLPVGDWVVLRPGTPTLTAEQKQRLGLPVFVKP 187

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD-----ASL 187
            + GSSLG+  +   +   LD   + +     ++L+E  V G E+ CGV+        + 
Sbjct: 188 ARAGSSLGVSRV--AEWAELDRAIAIARETDPKVLVEAAVVGREVECGVLEHPDGRIEAS 245

Query: 188 DVTEIAVPKS-DFYSYELKYSSLNST-HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
              EI V    +FY ++ KY    +    +PA +P ++   +  L+  A  A+  +G++R
Sbjct: 246 PPAEIHVGGGYEFYDFDAKYLDDTAASFDIPADLPDEVTARIHELSRRAFAALDAQGLAR 305

Query: 246 SDFLFDPLS---RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
            DF   P      +V   E+N  PG TP+S++P M A AG S+R+L+  ++  A   
Sbjct: 306 VDFFVRPDGDLADRVVINEVNTLPGFTPISMYPAMWAKAGVSYRDLITVLIRTALAR 362


>gi|319900221|ref|YP_004159949.1| D-alanine--D-alanine ligase [Bacteroides helcogenes P 36-108]
 gi|319415252|gb|ADV42363.1| D-alanine--D-alanine ligase [Bacteroides helcogenes P 36-108]
          Length = 329

 Score =  281 bits (719), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 91/323 (28%), Positives = 159/323 (49%), Gaps = 33/323 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           +A++ GG +SE  VSL S +   S ++   + +  + +      VL              
Sbjct: 5   IAIVGGGDTSEYHVSLRSAQGIYSFIDKEKYTLYIVQMHGLDWHVLLPDGTAAPVDRNDF 64

Query: 47  ------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
                   +  D A+  +HG  GEDG +Q   ++L IPY+  G+LA++L+ DK    Q +
Sbjct: 65  SFMLDGKKIVFDFAYITIHGTPGEDGRLQGYFDMLHIPYSCCGVLAASLTYDKFACNQFL 124

Query: 101 SSCGVPVCPSILVNR----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
            + GV +  S+L+ +       D    I  P  IKP  GGSS G+  +KK + I   + +
Sbjct: 125 KAFGVRIAESLLLRKGQTVSDEDVIEKIGLPCFIKPSLGGSSFGVSKVKKREQIQPAIAK 184

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNST 212
             ++    ++++E +++G ELTCG            +TE+ V  ++++ YE KY+   S 
Sbjct: 185 --AFEEAREVVVEAFMEGTELTCGCYKTKDKSIVFPITEV-VTHNEYFDYEAKYN-GESD 240

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
            + PA+IP  +   VQ+L    +  +G +GI R D++      K+  LE+N  PGMTP S
Sbjct: 241 EITPARIPDGLRDRVQKLTSAIYDILGAQGIIRVDYIVTE-GEKINLLEVNTTPGMTPTS 299

Query: 273 IFPEMAAYAGYSFRELLLWMVED 295
             P+    AG   ++++  ++E+
Sbjct: 300 FIPQQVRAAGLDIKDVMTDIIEN 322


>gi|123966700|ref|YP_001011781.1| D-alanyl-alanine synthetase A [Prochlorococcus marinus str. MIT
           9515]
 gi|166198500|sp|A2BY13|DDL_PROM5 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|123201066|gb|ABM72674.1| D-alanine--D-alanine ligase [Prochlorococcus marinus str. MIT 9515]
          Length = 355

 Score =  280 bits (718), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 91/345 (26%), Positives = 159/345 (46%), Gaps = 54/345 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASAL----EDAGFKVSQIDVDRSVGLV----------- 45
           + ++ GG S+E  VS+SS K    AL        F++    +++    +           
Sbjct: 9   IGIIFGGTSNEHYVSISSAKTVFKALISRTNKELFRIKAFYINKHGVWIDSDLSLEILRE 68

Query: 46  -----------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
                                  L     D+ F +LHG  GEDG +  +L+  + P    
Sbjct: 69  NSGNNIFEKYQELPNRKINFLNNLEFQNIDIWFPLLHGCNGEDGAIHGLLKFTQKPLIGC 128

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-----------DSQHLISPPYVIK 131
           GI  SA+ MDK+  KQ+ S+  +P    + +  + +           +    ++ P  +K
Sbjct: 129 GISGSAIGMDKILMKQIFSNLSIPQVNFLAIQNYDLSDDNVKDNLSVEIIEKLNLPVFVK 188

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSSLGI   K    I   L +  +W    +++IE+ ++  EL CG++G+  L  ++
Sbjct: 189 PANSGSSLGISKAKNKSEIIKALQK--AWEIDSRIVIEEGLNVRELECGIIGNLKLSTSK 246

Query: 192 IAVPK--SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
           I      SD+Y Y+ KYS+ N   ++PA I   I ++++ LA  + +A+   G +R DF 
Sbjct: 247 IGEVSYSSDWYDYDSKYSTDN-KIIIPADIDSQISEQIKDLAIRSCRALNIYGFARVDFF 305

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            + +SRK+F  EIN  PG T  S+FP +   +G +  +L+  +++
Sbjct: 306 LEKISRKIFLNEINTIPGFTSKSMFPMLWKASGLNIDQLVAKLID 350


>gi|123969037|ref|YP_001009895.1| D-alanyl-alanine synthetase A [Prochlorococcus marinus str. AS9601]
 gi|166198501|sp|A2BSM7|DDL_PROMS RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|123199147|gb|ABM70788.1| D-alanine--D-alanine ligase [Prochlorococcus marinus str. AS9601]
          Length = 355

 Score =  280 bits (718), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 95/345 (27%), Positives = 156/345 (45%), Gaps = 54/345 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASA----LEDAGFKVSQI---------DVDRSVGLVLA 47
           + ++ GG S+E EVS+SS K    A    +    F +            D D S  +++ 
Sbjct: 9   IGLIFGGNSNEHEVSISSAKTVFQAFKSEINKERFTIRAFYINKYGDWLDSDSSEKILID 68

Query: 48  HLK-------------------------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
             K                          D+ F +LHG  GEDG +  +L   + P    
Sbjct: 69  ESKNKNTTKKQIFNQEKINFLDGVDFQNVDVWFPLLHGINGEDGSIHGLLRFTKKPLVGC 128

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL-----------ISPPYVIK 131
           GI+ SAL MDK+  K + S+  +P    ++     ++ + +           ++ P  +K
Sbjct: 129 GIIGSALGMDKILMKIIFSNLKIPQVNYLVFQNQDLNDEEVKNKLIHEILKKLNFPVFVK 188

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSSLGI  +     I   L    +      +LIE+ ++  E+ CG++G++ L  +E
Sbjct: 189 PSNSGSSLGISKVINKSEIIPAL--EKARGIDPSILIEEGLEVREIECGIIGNSKLLTSE 246

Query: 192 IAVP--KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
           I     KSD+Y Y  KY S N   ++PA+I   I KE++ +A  + +A+   G +R DF 
Sbjct: 247 IGEVNYKSDWYDYNSKYHSNN-KIIIPAEIDSKISKEIKEIAIKSCRALNIFGFARVDFF 305

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            +  S K+F  EIN  PG T  S+FP +   +G    +L+  +V+
Sbjct: 306 LEKSSNKIFLNEINTIPGFTKNSMFPMLWKASGLKIEQLVAKLVD 350


>gi|253564150|ref|ZP_04841607.1| D-alanyl-alanine synthetase A [Bacteroides sp. 3_2_5]
 gi|251947926|gb|EES88208.1| D-alanyl-alanine synthetase A [Bacteroides sp. 3_2_5]
 gi|301161554|emb|CBW21094.1| putative D-Alanine-D-Alanine-Ligase [Bacteroides fragilis 638R]
          Length = 324

 Score =  280 bits (718), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 88/322 (27%), Positives = 157/322 (48%), Gaps = 31/322 (9%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-----------------VDRSVG 43
           +A++ GG +SE  VSL S +   S ++   + +  ++                 VDR+  
Sbjct: 5   IAIVAGGDTSEIVVSLRSAQGIYSFIDKEKYNLYIVEMEGRRWEVQLPDGSKTPVDRNDF 64

Query: 44  LVL---AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
             +     +  D A+  +HG  GEDG +Q   +++ IPY+  G+LA+A++ DK    Q +
Sbjct: 65  SFMNGAEKVVFDFAYITIHGTPGEDGRLQGYFDMMRIPYSCCGVLAAAITYDKFVCNQYL 124

Query: 101 SSCGVPVCPSILVNR----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
            + GV +  S+L+ +       D    I  P  IKP  GGSS G+  +K  + I   + +
Sbjct: 125 KAFGVRISESLLLRQGQAVSDEDVVEKIGLPCFIKPNLGGSSFGVTKVKTREQIQPAIAK 184

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI---AVPKSDFYSYELKYSSLNSTH 213
             +++  ++++IE ++ G ELTCG        V       V  ++F+ Y+ KY+      
Sbjct: 185 --AFSEAEEVMIEAFMGGTELTCGCYKTKEKSVVFPLTEVVTHNEFFDYDAKYN-GQVDE 241

Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273
           + PA+I  ++ + VQ L    +  +GC GI R D++      K+  LE+N  PGMT  S 
Sbjct: 242 ITPARISEELTRRVQTLTSAIYDILGCSGIIRVDYIITE-GEKINLLEVNTTPGMTATSF 300

Query: 274 FPEMAAYAGYSFRELLLWMVED 295
            P+    AG   ++++  ++E+
Sbjct: 301 IPQQVRAAGLDIKDVMTDIIEN 322


>gi|227538332|ref|ZP_03968381.1| D-alanine--D-alanine ligase [Sphingobacterium spiritivorum ATCC
           33300]
 gi|227241847|gb|EEI91862.1| D-alanine--D-alanine ligase [Sphingobacterium spiritivorum ATCC
           33300]
          Length = 334

 Score =  280 bits (718), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 90/330 (27%), Positives = 158/330 (47%), Gaps = 37/330 (11%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS------------------- 41
           +A+L GG + E EVS  S     S L+   + V  I + +                    
Sbjct: 5   IALLTGGYTGEAEVSFKSSAFVYSQLDHNKYDVYLITITKDHWFHVNEQGVKFTVNRENF 64

Query: 42  -VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
            + L    ++ DLAF ++HG  GEDG +Q   ++L+IPYT    L S+L+M+K  +K V+
Sbjct: 65  TLPLDHETIRFDLAFILIHGTPGEDGRLQGYFDMLDIPYTSCDALTSSLTMNKGYTKAVL 124

Query: 101 SSCGVP---VCPSILVNRFTMDS-----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152
              G+P   +  S+L+            Q  +S PY +KP  GGSS+G+  +K ++ +  
Sbjct: 125 --AGIPDLHMAKSVLLFEAQRAEAVATVQANLSLPYFVKPNAGGSSIGMTKVKTNEELAE 182

Query: 153 DLLQSS-SWNHGDQLLIEQYVDGIELTCGVMGDAS-----LDVTEIAVPKSDFYSYELKY 206
            + ++  + N G Q+++E++V G E + G+  +       L  TE+   + +F+ YE KY
Sbjct: 183 AIDKAFDAENTGKQVIVEEFVTGREFSQGIYRNVEGLLTVLPATEVKTTR-EFFDYEAKY 241

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
           +   +  + PA +  +    +  L    +  + C+G+ R DF  +  + K +++EIN  P
Sbjct: 242 TPGLTEEITPADLTEEQQSRIAALLREVYIRLNCKGMVRIDFFLENGTDKFYFIEINTIP 301

Query: 267 GMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           G T  S  P+    AG    +    ++E A
Sbjct: 302 GQTAQSFIPQQVRAAGMKETDFYGELIEVA 331


>gi|153808959|ref|ZP_01961627.1| hypothetical protein BACCAC_03260 [Bacteroides caccae ATCC 43185]
 gi|149128292|gb|EDM19511.1| hypothetical protein BACCAC_03260 [Bacteroides caccae ATCC 43185]
          Length = 324

 Score =  280 bits (718), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 88/322 (27%), Positives = 157/322 (48%), Gaps = 31/322 (9%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-----------------VDRSVG 43
           +A++ GG +SE  VSL S +   S ++   + +  ++                 VDR+  
Sbjct: 5   IAIVAGGDTSEIVVSLRSAQGIYSFIDKEKYNLYIVEMEGRRWEVQLPDGNKVPVDRNDF 64

Query: 44  LVL---AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
             +     +  D A+  +HG  GEDG +Q   +++ IPY+  G+LA+A++ DK    Q +
Sbjct: 65  SFMNGTEKVVFDFAYITIHGTPGEDGRLQGYFDMMRIPYSCCGVLAAAITYDKFACNQYL 124

Query: 101 SSCGVPVCPSILVNR----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
            + GV +  S+L+ +       D    I  P  IKP  GGSS G+  +K  + I   +++
Sbjct: 125 KAFGVRIAESLLLRQGQSVSDEDVLEKIGLPCFIKPSLGGSSFGVTKVKTKEQIQPAIVK 184

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA---VPKSDFYSYELKYSSLNSTH 213
             ++   +++L+E +++G ELTCG        V       V  ++F+ Y+ KY+      
Sbjct: 185 --AFGEAEEVLVEAFMEGTELTCGCYKTKEKSVVFPPTEVVTHNEFFDYDAKYN-GQVDE 241

Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273
           + PA+I  ++   VQ L    +  +GC GI R D++      K+  LE+N  PGMT  S 
Sbjct: 242 ITPARISDELTDRVQMLTSAIYDILGCSGIIRVDYIVTA-GEKINLLEVNTTPGMTATSF 300

Query: 274 FPEMAAYAGYSFRELLLWMVED 295
            P+    AG   ++++  ++E+
Sbjct: 301 IPQQVRAAGLEIKDVMTDIIEN 322


>gi|260495138|ref|ZP_05815266.1| D-alanine-D-alanine ligase [Fusobacterium sp. 3_1_33]
 gi|260197195|gb|EEW94714.1| D-alanine-D-alanine ligase [Fusobacterium sp. 3_1_33]
          Length = 287

 Score =  280 bits (718), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 106/296 (35%), Positives = 165/296 (55%), Gaps = 15/296 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59
           +AV MGG SSE+E+SL SG+A   +L+  G+    + +D R+        + DLA+ VLH
Sbjct: 3   IAVFMGGTSSEKEISLKSGEAVLESLKKQGYDAYGVVLDERNQVTAFLDNEYDLAYLVLH 62

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G  GE+G +QA+L++L   YT SG+LASA++MDK ++KQ+  S G+ V  +         
Sbjct: 63  GGNGENGKIQAVLDILGKKYTGSGVLASAITMDKDKTKQIAQSVGIRVPKAY------RT 116

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
            + +   P +IKP+  GSS G+ +    +     + + +      + +IE Y+ G ELT 
Sbjct: 117 VEEIERFPVIIKPVDEGSSKGVFLCNNREEAEEAVKKLA------RPIIEDYIVGEELTV 170

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
           GV+   +L V +I       Y Y+ KY+   S H  PAKI    YKE  ++A   H   G
Sbjct: 171 GVLNGKALGVLKIIPQADVLYDYDSKYADGGSIHEFPAKIEDKSYKEAMKIAEKVHSEFG 230

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
            +GISRSDF+      ++++LE+N  PGMT  S+ P++A   GY+F +++   VE 
Sbjct: 231 MKGISRSDFIL--SDGELYFLEVNSSPGMTKTSLIPDLATLKGYTFDDVVRITVET 284


>gi|317474425|ref|ZP_07933699.1| D-alanine-D-alanine ligase [Bacteroides eggerthii 1_2_48FAA]
 gi|316909106|gb|EFV30786.1| D-alanine-D-alanine ligase [Bacteroides eggerthii 1_2_48FAA]
          Length = 324

 Score =  280 bits (718), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 89/322 (27%), Positives = 154/322 (47%), Gaps = 31/322 (9%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40
           +A+  GG +SE EVSL S +   S ++   + +  +++                    D 
Sbjct: 5   IAIACGGDTSEFEVSLRSAQGIYSFIDKEKYTLYIVEMHGLDWHVQLPDGTKAPVDRNDF 64

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           S  L    +  D  +  +HG  GEDG +Q  L++L IPY+  G+LA+AL+ DK    Q +
Sbjct: 65  SFRLGGEKVVFDFVYITIHGTPGEDGRLQGYLDMLHIPYSCCGVLAAALTYDKFACNQYL 124

Query: 101 SSCGVPVCPSILVNR----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
            + GV +  S+L+ +       D    I  P  IKP  GGSS G+  +K  + I   +  
Sbjct: 125 KAFGVRIADSLLLRQGQSVSDEDVIGKIGLPCFIKPSLGGSSFGVTKVKTREEIQPAI-- 182

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV---TEIAVPKSDFYSYELKYSSLNSTH 213
             ++    ++L+E ++ G+E+TCG        V       V  ++++ Y+ KY+   S  
Sbjct: 183 EKAFKEAREVLVEAFMQGMEITCGCYKTKEKSVVFPITEVVSHNEYFDYKAKYN-GESDE 241

Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273
           + PA+IP ++   VQ+L    +  +G  GI R D++      K+  LE+N  PGMT  S 
Sbjct: 242 ITPARIPDELRDRVQKLTSAIYDILGAAGIIRVDYIITE-GEKINLLEVNTTPGMTATSF 300

Query: 274 FPEMAAYAGYSFRELLLWMVED 295
            P+    A    ++++  ++E+
Sbjct: 301 IPQQVRAANLDIKDVMTDIIEN 322


>gi|307297640|ref|ZP_07577446.1| D-alanine/D-alanine ligase [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306916900|gb|EFN47282.1| D-alanine/D-alanine ligase [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 305

 Score =  280 bits (718), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 105/301 (34%), Positives = 159/301 (52%), Gaps = 13/301 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AV+ GG SSER+VS+ SG   + +LE  G +V   D+ R     L  LK DL F  LHG
Sbjct: 5   IAVVYGGFSSERDVSVKSGSNISKSLERLGAEVIGFDLKRDRIASLLSLKADLFFLALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS-CGVPVCPSILVNRFTMD 119
            FGEDG VQ ++EL  +PYT S    SA+  DK  + ++V +   +P+   ++      D
Sbjct: 65  KFGEDGTVQGLMELAGLPYTSSDSRTSAVCFDKEITYRLVKAEVDLPLWKKVI---SEKD 121

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
            +     P VIKP + GSS+G+ +   D +  L        +  D LL+E+Y+DG E+T 
Sbjct: 122 LEGWKIFPCVIKPTREGSSIGVFIC--DDASTLINRTRLLLDVYDSLLLEEYIDGREITV 179

Query: 180 GVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
            ++    G   L V EI  PK  FY YE KY+   +  V+PA I     + +   +   +
Sbjct: 180 SIIDSREGIKVLPVLEIK-PKRRFYDYEAKYTPGLTEFVVPAPIERSTLESIIEKSVAVY 238

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           + +GCR  +R D +        ++LE+N  PGMT +S  P  A  AG +F +++L ++E 
Sbjct: 239 KLLGCRDFARVDGIL--KGGVFYFLEVNTIPGMTDLSDLPMSARAAGMTFDDVVLDIIEA 296

Query: 296 A 296
           A
Sbjct: 297 A 297


>gi|308235015|ref|ZP_07665752.1| D-alanyl-alanine synthetase A [Gardnerella vaginalis ATCC 14018]
 gi|311114197|ref|YP_003985418.1| D-alanine--D-alanine ligase [Gardnerella vaginalis ATCC 14019]
 gi|310945691|gb|ADP38395.1| D-alanine--D-alanine ligase [Gardnerella vaginalis ATCC 14019]
          Length = 381

 Score =  280 bits (718), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 94/372 (25%), Positives = 158/372 (42%), Gaps = 79/372 (21%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +  L GG + E  +S  S     SA++++ F++ +I + +    ++    P         
Sbjct: 6   VVFLYGGKADEHSISCISAAGVLSAVDESRFEIVRIAITKQGEWIVGGEDPRNFRMEEGE 65

Query: 52  ---------------------------------------DLAFNVLHGNFGEDGLVQAIL 72
                                                  D  F VLHG  GEDG +Q +L
Sbjct: 66  LPVITKTAETRDVVLDPAKGADGFLVREADGTLTSLGHIDAVFPVLHGPNGEDGTLQGLL 125

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL--VNRFTMDS---------- 120
           E++++PY   G+LASA  MDK  +KQ+  + G+ V P I   V +F  D+          
Sbjct: 126 EMMQVPYVGCGVLASAACMDKYYAKQLFKAAGIDVAPGIALDVRKFASDAANHFDAYANE 185

Query: 121 ------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
                 +  +  P  +KP + GSS G+  ++   +  L      +  H  ++L+EQ +D 
Sbjct: 186 ILEQVEEAKLEYPLFVKPSRAGSSFGVTKVESRDAKALADAVYEASKHDWRVLVEQGIDA 245

Query: 175 IELTCGVMGDASLDVTEIAVP-----------KSDFYSYELKYSSLNSTHVL-PAKIPLD 222
            E+ C V+     D  + + P           +  FY ++ KY    ++HV  PA +P +
Sbjct: 246 REIECAVLAARDGDEPQASWPGEVVLDKREAGEDQFYDFDSKYMDSAASHVEVPANLPEE 305

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAG 282
             + V+  A  A +A   RG+SR D    P    V   EIN  PG TP+S++P+     G
Sbjct: 306 TLQRVRNTALAAFKAADGRGLSRVDSFVTP-EGHVMINEINTMPGFTPISMYPKAWEATG 364

Query: 283 YSFRELLLWMVE 294
            S+ +L+  ++E
Sbjct: 365 ISYSDLITKLIE 376


>gi|265765163|ref|ZP_06093438.1| D-alanyl-alanine synthetase A [Bacteroides sp. 2_1_16]
 gi|263254547|gb|EEZ25981.1| D-alanyl-alanine synthetase A [Bacteroides sp. 2_1_16]
          Length = 324

 Score =  280 bits (718), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 88/322 (27%), Positives = 157/322 (48%), Gaps = 31/322 (9%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-----------------VDRSVG 43
           +A++ GG +SE  VSL S +   S ++   + +  ++                 VDR+  
Sbjct: 5   IAIVAGGDTSEIVVSLRSAQGIYSFIDKEKYNLYIVEMEGRRWEVQLPDGSKTPVDRNNF 64

Query: 44  LVL---AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
             +     +  D A+  +HG  GEDG +Q   +++ IPY+  G+LA+A++ DK    Q +
Sbjct: 65  SFMNGAEKVVFDFAYITIHGTPGEDGRLQGYFDMMRIPYSCCGVLAAAITYDKFVCNQYL 124

Query: 101 SSCGVPVCPSILVNR----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
            + GV +  S+L+ +       D    I  P  IKP  GGSS G+  +K  + I   + +
Sbjct: 125 KAFGVRISESLLLRQGQAVSDEDVVEKIGLPCFIKPNLGGSSFGVTKVKTREQIQPAIAK 184

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI---AVPKSDFYSYELKYSSLNSTH 213
             +++  ++++IE ++ G ELTCG        V       V  ++F+ Y+ KY+      
Sbjct: 185 --AFSEAEEVMIEAFMGGTELTCGCYKTKEKSVVFPLTEVVTHNEFFDYDAKYN-GQVDE 241

Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273
           + PA+I  ++ + VQ L    +  +GC GI R D++      K+  LE+N  PGMT  S 
Sbjct: 242 ITPARISEELTRRVQTLTSAIYDILGCSGIIRVDYIITE-GEKINLLEVNTTPGMTATSF 300

Query: 274 FPEMAAYAGYSFRELLLWMVED 295
            P+    AG   ++++  ++E+
Sbjct: 301 IPQQVRAAGLDIKDVMTDIIEN 322


>gi|256113828|ref|ZP_05454621.1| D-alanine--D-alanine ligase/VANA/B/C [Brucella melitensis bv. 3
           str. Ether]
 gi|265995177|ref|ZP_06107734.1| D-alanine-D-alanine ligase A [Brucella melitensis bv. 3 str. Ether]
 gi|262766290|gb|EEZ12079.1| D-alanine-D-alanine ligase A [Brucella melitensis bv. 3 str. Ether]
          Length = 353

 Score =  280 bits (718), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 93/347 (26%), Positives = 165/347 (47%), Gaps = 51/347 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           + VL GG S+E +VS+ S     +AL+ A ++   + V R+   +L              
Sbjct: 8   IVVLFGGRSAEHDVSVLSATNVMNALDPAKYEAVPVFVTRAGQWLLSRFVNGALEKPSSG 67

Query: 47  -----------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                     K D+ F VLHG  GEDG VQ + ++  +P    G
Sbjct: 68  AELCLVPGGCGRAIVVPDAGAPYEADKIDIIFPVLHGLHGEDGAVQGLAQVARVPLAGCG 127

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSL 139
           I  SA ++DK  +K++V+  G+    S+ + R  + +    +  +  P  IKP + G+S+
Sbjct: 128 IPGSANALDKDIAKRLVNEAGLSTAKSVTITREEVPAFSALEQALGLPIFIKPARQGASV 187

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD--ASLDVT---EIAV 194
           G+  +  +      +  S  + + D+LL E+++   E+ CGV+ D   +L V+   EI  
Sbjct: 188 GVHKVVTEADYQAAM--SDGFIYDDKLLAEEFIQAREVECGVLEDEGGALFVSRAGEIVP 245

Query: 195 PKSD-FYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            +S  FYSY+ KY   + T +  PA++P  +  E++ +A  A + +GC  ++R DF    
Sbjct: 246 AESHCFYSYDAKYIDADGTEIKVPAELPEQVENEIRAIAAKAFRVLGCDSMARVDFFVTA 305

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
             R++   EIN  PG T +S++ ++ A +G S+ E++  +V      
Sbjct: 306 -DRRIVLNEINTIPGFTDMSMYSKVMAVSGVSYPEIINRLVAHGLAR 351


>gi|160885529|ref|ZP_02066532.1| hypothetical protein BACOVA_03529 [Bacteroides ovatus ATCC 8483]
 gi|260172151|ref|ZP_05758563.1| D-alanyl-alanine synthetase A [Bacteroides sp. D2]
 gi|293371713|ref|ZP_06618124.1| D-ala D-ala ligase N-terminal domain protein [Bacteroides ovatus SD
           CMC 3f]
 gi|299147381|ref|ZP_07040446.1| D-alanine--D-alanine ligase [Bacteroides sp. 3_1_23]
 gi|315920460|ref|ZP_07916700.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|156109151|gb|EDO10896.1| hypothetical protein BACOVA_03529 [Bacteroides ovatus ATCC 8483]
 gi|292633410|gb|EFF51980.1| D-ala D-ala ligase N-terminal domain protein [Bacteroides ovatus SD
           CMC 3f]
 gi|298514659|gb|EFI38543.1| D-alanine--D-alanine ligase [Bacteroides sp. 3_1_23]
 gi|313694335|gb|EFS31170.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 324

 Score =  280 bits (718), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 87/322 (27%), Positives = 156/322 (48%), Gaps = 31/322 (9%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40
           +A++ GG +SE  VSL S +   S ++   + +  +++                    D 
Sbjct: 5   IAIVAGGDTSEIVVSLRSAQGIYSFIDKEKYNLYIVEMEGRRWEVQLPDGNKVPVDRNDF 64

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           S       +  D A+  +HG  GEDG +Q   +++ IPY+  G+LA+A++ DK    Q +
Sbjct: 65  SFTNGTEKVVFDFAYITIHGTPGEDGRLQGYFDMMRIPYSCCGVLAAAITYDKFTCNQYL 124

Query: 101 SSCGVPVCPSILVNR----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
            + GV +  S+L+ +       +    I  P  IKP  GGSS G+  +K  + I   +++
Sbjct: 125 KAFGVRIAESLLLRQGQSVSDEEVVEKIGLPCFIKPSLGGSSFGVTKVKTKEQIQPAIVK 184

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA---VPKSDFYSYELKYSSLNSTH 213
             ++   +++++E ++DG ELTCG        V       V  ++F+ Y+ KY+      
Sbjct: 185 --AFGEAEEVIVEAFMDGTELTCGCYKTKEKSVIFPPTEVVTHNEFFDYDAKYN-GQVDE 241

Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273
           + PA+I  ++ K VQ L    +  +GC GI R D++      K+  LE+N  PGMT  S 
Sbjct: 242 ITPARISDELTKRVQMLTSAIYDILGCSGIIRVDYIITA-GEKLNLLEVNTTPGMTTTSF 300

Query: 274 FPEMAAYAGYSFRELLLWMVED 295
            P+    AG   ++++  ++E+
Sbjct: 301 IPQQVRAAGLDIKDVMTDIIEN 322


>gi|16612079|gb|AAL27442.1|AF430807_7 VanE [Enterococcus faecalis]
          Length = 352

 Score =  280 bits (718), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 97/337 (28%), Positives = 164/337 (48%), Gaps = 47/337 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           +A++ GG+SSE EVSL S  A    +E   + V +I +       L              
Sbjct: 4   VAIIFGGVSSEYEVSLKSAVAIIKNMESIDYNVMKIGITEEGHWYLFEGTTDKIKKDRWF 63

Query: 49  -------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                    +KPD+ F VLHG +GE+G +Q + ELL+IPY   G
Sbjct: 64  LDESCEEIVVDFAKKSFVLKNSKKIIKPDILFPVLHGGYGENGAMQGVFELLDIPYVGCG 123

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT-----MDSQHLISPPYVIKPLKGGSS 138
           I A+A+SM+K+   Q   + GV   PS+++ +            +   P  IKP + GSS
Sbjct: 124 IGAAAISMNKIMLHQFAEAIGVKSTPSMIIEKGQDLQKVDAFAKIHGFPLYIKPNEAGSS 183

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK-- 196
            GI  +++   +   + ++S   +  ++LI++ V G+E+ CG++G+  L V E       
Sbjct: 184 KGISKVERKSDLYKAIDEAS--KYDSRILIQKEVKGVEIGCGILGNEQLVVGECDQISLV 241

Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256
             F+ YE KY+ + +  +LPAK+ +D  +++Q  A   ++ +GC+G++R DF       +
Sbjct: 242 DGFFDYEEKYNLVTAEILLPAKLSIDKKEDIQMKAKKLYRLLGCKGLARIDFFLT-DDGE 300

Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +   EIN  PG T  S FP M    G  ++E++  ++
Sbjct: 301 ILLNEINTMPGFTEHSRFPMMMNEIGMDYKEIIENLL 337


>gi|254967046|gb|ACT97559.1| putative D-alanine-D-alanine ligase [uncultured organism]
          Length = 324

 Score =  280 bits (718), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 90/322 (27%), Positives = 158/322 (49%), Gaps = 31/322 (9%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40
           +A++ GG +SE EVSL S +   S ++   + +  +++                    D 
Sbjct: 5   IAIVCGGDTSEFEVSLRSAQGIYSFIDKERYTLYIVEMRGTDWHVQLPDGTKTPVDRNDF 64

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           S  L  A +  D A+  +HG  GEDG +Q   ++L IPY+  G+LA+AL+ DK    Q +
Sbjct: 65  SFRLDGAKVVFDFAYITIHGTPGEDGRLQGYFDMLHIPYSCCGVLAAALTYDKFACNQYL 124

Query: 101 SSCGVPVCPSILVNR----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
            + GV +  S+L+ +       D    I  P  IKP  GGSS G+  +   + I   + +
Sbjct: 125 KAFGVRIADSLLLRQGQSVSDEDVIGKIGLPCFIKPSLGGSSFGVTKVNVKEQIHPAIAK 184

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV---TEIAVPKSDFYSYELKYSSLNSTH 213
           + +     ++L+E ++DG+E+TCG   +    V       V  ++++ Y+ KY+   S  
Sbjct: 185 AFA--EAKEVLVEAFMDGMEITCGCYKNKEKSVVFPITEVVSHNEYFDYKAKYN-GESDE 241

Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273
           + PA+IP ++   VQ+L    +  +G  GI R D++      K+  LE+N  PGMT  S 
Sbjct: 242 ITPARIPDELRDRVQKLTSAIYDILGASGIIRVDYIITE-GEKINLLEVNTTPGMTATSF 300

Query: 274 FPEMAAYAGYSFRELLLWMVED 295
            P+    A    ++++  ++E+
Sbjct: 301 IPQQVRAANLESKDVMTDIIEN 322


>gi|323339467|ref|ZP_08079746.1| D-alanine-D-alanine ligase A [Lactobacillus ruminis ATCC 25644]
 gi|323093081|gb|EFZ35674.1| D-alanine-D-alanine ligase A [Lactobacillus ruminis ATCC 25644]
          Length = 382

 Score =  280 bits (717), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 97/345 (28%), Positives = 168/345 (48%), Gaps = 52/345 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI------------------------ 36
           +A+L GG SSE +VS  S      AL+   ++VS                          
Sbjct: 8   IALLFGGNSSEHDVSKRSAHTVFDALDKDKYEVSVFMFTKQGFLLGNKDSMRIFDGEPED 67

Query: 37  --------DVDRSVGLV----LAHLK-PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                   DVD S  L     L+ +K  DL   V+HGN GEDG VQ++  LL  PY  SG
Sbjct: 68  AVVAEAIKDVDFSNPLANIQSLSEVKDIDLFIPVIHGNMGEDGTVQSLFRLLNKPYIGSG 127

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVIKPLKGGS 137
           I +SA+S DK  +KQ+++  G+     ++V                +     +KP + GS
Sbjct: 128 IASSAVSFDKDLTKQLLTYHGIRNTKYVVVTPENQSEYTYEKCAAELGETLFVKPARQGS 187

Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVT---EIA 193
           S+GI  +   +    D      +++  ++L+E+ + +  E+ C V+G+  +  +    I 
Sbjct: 188 SVGIYKVSNKEEF--DKAIQDGFHYDFKILVEETIANPREVECSVLGNRDIKASKLGAIR 245

Query: 194 VPKSD-FYSYELKYSSLNS-THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
           VP  D FY Y  K+   +     +P ++P ++ KE+Q+++  A + +G RG++R DFL D
Sbjct: 246 VPAEDAFYDYNNKFVDASGVVFEIPVELPENLTKEIQQMSLDAFRVLGNRGLARMDFLVD 305

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                 ++ E+N  PG T +S++P++ A +G ++++LL  +++ A
Sbjct: 306 END-VPYFGEVNTLPGFTNISLYPQLWAVSGINYKDLLDRLIQLA 349


>gi|300774222|ref|ZP_07084089.1| D-alanine--D-alanine ligase [Sphingobacterium spiritivorum ATCC
           33861]
 gi|300758901|gb|EFK55730.1| D-alanine--D-alanine ligase [Sphingobacterium spiritivorum ATCC
           33861]
          Length = 334

 Score =  280 bits (717), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 90/330 (27%), Positives = 158/330 (47%), Gaps = 37/330 (11%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS------------------- 41
           +A+L GG + E EVS  S     S L+   + V  I + +                    
Sbjct: 5   IALLTGGYTGEAEVSFKSSAFVYSQLDHNKYDVYLITITKDHWFHVNEQGVKFTVNRENF 64

Query: 42  -VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
            + L    ++ DLAF ++HG  GEDG +Q   ++L+IPYT    L S+L+M+K  +K V+
Sbjct: 65  TLPLDHETIRFDLAFILIHGTPGEDGRLQGYFDMLDIPYTSCDALTSSLTMNKGYTKAVL 124

Query: 101 SSCGVP---VCPSILVNRFTMDS-----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152
              G+P   +  S+L+            Q  +S PY +KP  GGSS+G+  +K ++ +  
Sbjct: 125 --AGIPDLHMAKSVLLFEAQRAEAVATVQANLSLPYFVKPNAGGSSIGMTKVKTNEELAE 182

Query: 153 DLLQSS-SWNHGDQLLIEQYVDGIELTCGVMGDAS-----LDVTEIAVPKSDFYSYELKY 206
            + ++  + N G Q+++E++V G E + G+  +       L  TE+   + +F+ YE KY
Sbjct: 183 AIDKAFDAENTGKQVIVEEFVTGREFSQGIYRNVEGLLTVLPATEVKTTR-EFFDYEAKY 241

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
           +   +  + PA +  +    +  L    +  + C+G+ R DF  +  + K +++EIN  P
Sbjct: 242 TPGLTEEITPADLTEEQQSRIAALLKEVYIRLNCKGMVRIDFFLENGTDKFYFIEINTIP 301

Query: 267 GMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           G T  S  P+    AG    +    ++E A
Sbjct: 302 GQTAQSFIPQQVRAAGMKETDFYGDLIEVA 331


>gi|60680013|ref|YP_210157.1| D-alanyl-alanine synthetase A [Bacteroides fragilis NCTC 9343]
 gi|81316915|sp|Q5LI31|DDL_BACFN RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|60491447|emb|CAH06197.1| putative D-Alanine-D-Alanine-Ligase [Bacteroides fragilis NCTC
           9343]
          Length = 324

 Score =  280 bits (717), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 88/322 (27%), Positives = 157/322 (48%), Gaps = 31/322 (9%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-----------------VDRSVG 43
           +A++ GG +SE  VSL S +   S ++   + +  ++                 VDR+  
Sbjct: 5   IAIVAGGDTSEIVVSLRSAQGIYSFIDKEKYNLYIVEMEGRRWEVQLQDGSKTPVDRNDF 64

Query: 44  LVL---AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
             +     +  D A+  +HG  GEDG +Q   +++ IPY+  G+LA+A++ DK    Q +
Sbjct: 65  SFMNGAEKVVFDFAYITIHGTPGEDGRLQGYFDMIRIPYSCCGVLAAAITYDKFVCNQYL 124

Query: 101 SSCGVPVCPSILVNR----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
            + GV +  S+L+ +       D    I  P  IKP  GGSS G+  +K  + I   + +
Sbjct: 125 KAFGVRISESLLLRQGQAVSDEDVVEKIGLPCFIKPNLGGSSFGVTKVKTREQIQPAIAK 184

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI---AVPKSDFYSYELKYSSLNSTH 213
             +++  ++++IE ++ G ELTCG        V       V  ++F+ Y+ KY+      
Sbjct: 185 --AFSEAEEVMIEAFMGGTELTCGCYKTKEKSVVFPLTEVVTHNEFFDYDAKYN-GQVDE 241

Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273
           + PA+I  ++ + VQ L    +  +GC GI R D++      K+  LE+N  PGMT  S 
Sbjct: 242 ITPARISEELTRRVQTLTSAIYDILGCSGIIRVDYIITE-GEKINLLEVNTTPGMTATSF 300

Query: 274 FPEMAAYAGYSFRELLLWMVED 295
            P+    AG   ++++  ++E+
Sbjct: 301 IPQQVRAAGLDIKDVMTDIIEN 322


>gi|88809162|ref|ZP_01124671.1| D-alanine--D-alanine ligase [Synechococcus sp. WH 7805]
 gi|88787104|gb|EAR18262.1| D-alanine--D-alanine ligase [Synechococcus sp. WH 7805]
          Length = 353

 Score =  280 bits (717), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 92/346 (26%), Positives = 151/346 (43%), Gaps = 52/346 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASAL----EDAGFKVSQIDVDRSVGLV----------- 45
           + V+ GG S E  VS+ S      AL        F+V  + +DR                
Sbjct: 8   VGVVFGGESGEHAVSIQSALTVIKALIAPDNQDRFEVIPVYIDREGRWWGPTVAQRVLDQ 67

Query: 46  ----------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                 +     D+ + VLHG  GEDG VQ +  L+  P+  SG
Sbjct: 68  NHAINSEDLPQPLPAPGLRQWPVDPDTVDIWYPVLHGPNGEDGTVQGLFTLMNKPFVGSG 127

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-----------QHLISPPYVIKP 132
           +L SA+ MDK+  K   ++ G+   P + +N   ++            +  +  P  +KP
Sbjct: 128 VLGSAVGMDKLAMKAAFAAAGLSQVPYLGLNAIDLEEPERLEQLLTRLEKELGYPCFVKP 187

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192
              GSS+GI   +    +   L Q++      +LL+EQ V   EL C V+G   L  + +
Sbjct: 188 ANLGSSVGITKARTRDELLDGLHQAAVL--DTRLLVEQGVKARELECAVLGRRHLRASVV 245

Query: 193 AVP--KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
                 +D+Y YE KY+   S  ++PA +P  + +++Q +A  A QA+   G +R D  +
Sbjct: 246 GEIRFDADWYDYETKYTEGRSQTLIPAPLPASVSQQIQAMAIRACQAVHAYGQARVDVFY 305

Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           D  S +++  EIN  PG T  S++P +    G    +L+  +V+ A
Sbjct: 306 DETSGQIWLNEINTLPGFTSQSMYPTLWEATGIPLPQLVAQLVDTA 351


>gi|329964665|ref|ZP_08301719.1| D-ala D-ala ligase protein [Bacteroides fluxus YIT 12057]
 gi|328525065|gb|EGF52117.1| D-ala D-ala ligase protein [Bacteroides fluxus YIT 12057]
          Length = 326

 Score =  280 bits (717), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 88/323 (27%), Positives = 159/323 (49%), Gaps = 33/323 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40
           +A++ GG +SE  VSL S +   S ++   + +  +++                    D 
Sbjct: 5   IAIVAGGDTSEFHVSLRSAQGIYSFIDKEKYTLYIVEMHGLDWHVQLPGGTKAPVDRNDF 64

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           S  L    +  D A+  +HG  GEDG +Q   ++L IPY+  G+LA++L+ DK    Q +
Sbjct: 65  SFRLDGEKIVFDFAYITIHGTPGEDGRLQGYFDMLHIPYSCCGVLAASLTYDKFACNQYL 124

Query: 101 SSCGVPVCPSILVNR----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
            + GV +  S+++ +       D    I  P  IKP  GGSS G+  +K ++ I   + +
Sbjct: 125 KAFGVRIAESLMLRQGQSVSNRDVLEKIGLPCFIKPSLGGSSFGVTKVKTEEQIQPAIAK 184

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNST 212
             ++    ++++E ++DG E+TCG            +TE+ V  ++++ Y+ KY+   S 
Sbjct: 185 --AFEEAQEVVVEAFMDGTEITCGCYKTKDKAVVFPITEV-VTHNEYFDYKAKYN-GESD 240

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
            + PA+I  D+ + VQ L    +  +G  GI R D++      K+  LE+N  PGMT  S
Sbjct: 241 EITPARISDDLTRRVQALTSAIYDILGASGIIRVDYIITA-GDKINLLEVNTTPGMTATS 299

Query: 273 IFPEMAAYAGYSFRELLLWMVED 295
             P+    AG   ++++  ++E+
Sbjct: 300 FIPQQVRAAGLDIKDVMTDIIEN 322


>gi|300769676|ref|ZP_07079559.1| D-alanine--D-alanine ligase [Lactobacillus plantarum subsp.
           plantarum ATCC 14917]
 gi|300492719|gb|EFK27904.1| D-alanine--D-alanine ligase [Lactobacillus plantarum subsp.
           plantarum ATCC 14917]
          Length = 374

 Score =  280 bits (717), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 92/343 (26%), Positives = 166/343 (48%), Gaps = 52/343 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS-----------------VG 43
           + +L GG SSE +VS  S      A++   +++    + ++                   
Sbjct: 13  VGMLFGGNSSEHDVSKRSAHNIYDAMDKNKYEIDLFLITKNGIVLSDAATRRVFDGEPED 72

Query: 44  LVLAHLKP--------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
            V+A   P                    D+ + V+HGN GEDG +Q + +LL+ PY  SG
Sbjct: 73  QVVAEEMPKLDMSDPLAPIKNLTLAKDIDIFYPVVHGNLGEDGTLQGLFKLLKKPYVGSG 132

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVIKPLKGGS 137
           +LASA S DK  +KQ+++   +     ++V     D       Q  +     IKP   GS
Sbjct: 133 VLASAASFDKDITKQILTHHHIQNTKYVVVTPENRDQMTYAYLQAHVGDHLFIKPANQGS 192

Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVT---EIA 193
           S+GI   + +Q     L  +  +++  ++L+E+ +D   E+ C ++G+ +   +    I 
Sbjct: 193 SIGIHKAENEQEYLDGLADAFKYDY--KILVEESIDNPREVECSILGNENPKASKLGAID 250

Query: 194 VPKSD-FYSYELKYSSLNS-THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
           VPK+D FY Y  K+   +  T  LP ++P D+ K +Q+++  A +A+G +G++R DFL  
Sbjct: 251 VPKTDTFYDYNNKFVDASGVTFELPVELPADLTKRIQQMSLDAFKALGLKGMARVDFLVS 310

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
               + +  EIN  PG T +S++P++   +G S+  L+  +++
Sbjct: 311 E-DGEPYLGEINTLPGFTNISLYPKLWEVSGISYTALIDQLIQ 352


>gi|257867515|ref|ZP_05647168.1| ligase [Enterococcus casseliflavus EC30]
 gi|257873844|ref|ZP_05653497.1| ligase [Enterococcus casseliflavus EC10]
 gi|161779858|gb|ABX79418.1| VanC2/3 [Enterococcus casseliflavus]
 gi|257801571|gb|EEV30501.1| ligase [Enterococcus casseliflavus EC30]
 gi|257808008|gb|EEV36830.1| ligase [Enterococcus casseliflavus EC10]
          Length = 350

 Score =  280 bits (716), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 91/342 (26%), Positives = 161/342 (47%), Gaps = 52/342 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDA--GFKVSQIDVDRSV---------------- 42
           +A++ GG S E  VSL+S  +   AL+ +   + +S I +                    
Sbjct: 4   IAIIFGGNSPEYTVSLASATSAIEALQSSPYDYDLSLIGITPDAMDWYLYTGELENIRQD 63

Query: 43  -------------------GLVLAHLK----PDLAFNVLHGNFGEDGLVQAILELLEIPY 79
                              G  L+  +    PD+ F ++HG +GEDG +Q + EL+++PY
Sbjct: 64  TWLLDTKHKQKIQPLFEGNGFWLSEEQQTLVPDVLFPIMHGKYGEDGSIQGLFELMKLPY 123

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIKPL 133
              G+  SAL M+K    Q  ++ GV   P+IL+       + +         P   KP 
Sbjct: 124 VGCGVAGSALCMNKWLLHQAAAAIGVQSAPTILLTNQANQQEQIEAFIQTHGFPVFFKPN 183

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
           + GSS GI  +   + I   L +  ++ +   +L+++ + G+E+ CG++G+ SL V    
Sbjct: 184 EAGSSKGITKVTCVEEIASALKE--AFTYCSAVLLQKNIVGVEIGCGILGNDSLTVGACD 241

Query: 194 VPK--SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
                  F+ +E KY  +++   +PA +P  I  +V+  A L ++++G +G++R DF   
Sbjct: 242 TISLVDGFFDFEEKYQLISAKITVPAPLPETIETKVKEQAQLLYRSLGLKGLARIDFFVT 301

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
               +++  EIN  PG T  S +P M A  G S++ELL  ++
Sbjct: 302 DQ-GELYLNEINTMPGFTSHSRYPAMMAAVGLSYQELLQKLL 342


>gi|118589872|ref|ZP_01547276.1| D-alanine-D-alanine ligase protein [Stappia aggregata IAM 12614]
 gi|118437369|gb|EAV44006.1| D-alanine-D-alanine ligase protein [Stappia aggregata IAM 12614]
          Length = 358

 Score =  280 bits (716), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 89/341 (26%), Positives = 158/341 (46%), Gaps = 51/341 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +A+L GG S+E EVS+ S      AL+ + +    I V      +++  +          
Sbjct: 10  VAILFGGRSAEHEVSVLSATNVMHALDPSKYDAVPIYVTLEGQWLVSRFENGKLTRPSTG 69

Query: 52  ----------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                       D  F VLHG  GEDG VQ + E+  +P    G
Sbjct: 70  TEICLVPGGMGRVVALDEGGRSHDLANLDALFPVLHGLHGEDGAVQGLAEVARVPLVGCG 129

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSL 139
           I  SA ++DK  +K+++   G+P   SI ++   + +    +  +  P  IKP + GSS+
Sbjct: 130 IAGSANALDKDLAKRLLIEAGLPAARSITIHPHEVPAFETLKKDLGLPIFIKPARQGSSV 189

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG--DASLDVT---EIAV 194
           G+  +         + +   + H ++LL E++V G E+   V+   D +L V+   EI  
Sbjct: 190 GVSKVMTAADFKAAVQE--GFKHDNKLLAEEFVLGREIEFAVLEECDGTLFVSRPGEIVP 247

Query: 195 PKS-DFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            +S  FY+Y+ KY     +   +PA++P ++   ++ LA  A +A+GC G++R DF    
Sbjct: 248 AESHGFYTYDAKYVDEDGAALKVPAELPGEVENRMKDLAAKAFRALGCDGMARVDFFLT- 306

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
               V   E+N  PG T +S++ +  A +G ++ E++  ++
Sbjct: 307 QDMNVLINELNTIPGFTNISMYSKAMAASGINYPEIIDRLI 347


>gi|148271442|ref|YP_001221003.1| putative D-alanine--D-alanine ligase [Clavibacter michiganensis
           subsp. michiganensis NCPPB 382]
 gi|147829372|emb|CAN00285.1| putative D-alanine--D-alanine ligase [Clavibacter michiganensis
           subsp. michiganensis NCPPB 382]
          Length = 335

 Score =  280 bits (716), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 103/336 (30%), Positives = 158/336 (47%), Gaps = 41/336 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           ++VL GG S ER+VS++S      AL   G +V  +D  R      A  +          
Sbjct: 3   ISVLFGGESEERDVSIASAAQVVPALRALGHEVVAVDTARGALDAAAEARILTPDVGVRP 62

Query: 52  ---------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84
                                      DL F  LHG  GEDG +QA+LEL  IP+T SG 
Sbjct: 63  PTSAELATAAAGGSAAVLRLPADLRDGDLVFLALHGGSGEDGRLQALLELAGIPFTGSGS 122

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
           L SAL+MDK  +K ++ + GV     I ++      +  +  P V+KP   GS++G+ V+
Sbjct: 123 LGSALAMDKDVAKTLLRAGGVRTPDWI-IDPEPDAVEPALGFPVVVKPTGQGSTVGLSVV 181

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYEL 204
           +  + +P  L  +        +++E++V G ELT GV+   +L V EI VP  + ++Y  
Sbjct: 182 RAAEELPAALELA---RRHGTVMVERFVRGRELTVGVLDGEALAVGEIGVPVDEAFTYAA 238

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           KY +       PA +P ++ +E +  A  AH+ +   G SRSDF  D     ++ +E N 
Sbjct: 239 KYQAGAIAETFPADLPSEVAEEARAAALAAHRILRLAGYSRSDFRLDDA-GALWIIEANS 297

Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
            PG+T  S+ P+ AA  G  + EL   +   A   R
Sbjct: 298 LPGLTATSLLPQSAAAVGIGYPELCDRIARIALRGR 333


>gi|294783649|ref|ZP_06748973.1| D-alanine--D-alanine ligase [Fusobacterium sp. 1_1_41FAA]
 gi|294480527|gb|EFG28304.1| D-alanine--D-alanine ligase [Fusobacterium sp. 1_1_41FAA]
          Length = 287

 Score =  280 bits (716), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 108/296 (36%), Positives = 163/296 (55%), Gaps = 15/296 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV-LAHLKPDLAFNVLH 59
           +AV MGG SSE+E+SL SG+A   +L+  G+    + +D +  +        DLA+ VLH
Sbjct: 3   IAVFMGGTSSEKEISLRSGEAVLESLQRQGYDAYGVVLDENNQVTAFLENDYDLAYLVLH 62

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G  GE+G +QA+L++L   YT SG+LASAL+MDK ++KQ+  + G+ V  S        D
Sbjct: 63  GGNGENGKIQAVLDILGKKYTGSGVLASALTMDKNKTKQIAENIGIRVPKSY------RD 116

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
              +   P +IKP+  GSS G+ +    +     L +        + +IE Y+ G ELT 
Sbjct: 117 LDSIERFPVIIKPVDEGSSKGLFLCNNKEEAGEALKKLR------KPIIEDYIVGEELTV 170

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
           GV+   +L V +I       Y Y+ KY+   S H  PAKI    YKE  ++A   H+   
Sbjct: 171 GVLNGKALGVLKIIPQADVLYDYDSKYAKGGSIHEFPAKIEDKSYKEAMKIAEKIHKEFK 230

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
            +GISRSDF+      K+++LE+N  PGMT  S+ P++A   GY+F +++   VE 
Sbjct: 231 MKGISRSDFILSE--GKLYFLEVNSSPGMTKTSLIPDLATLQGYTFDDVVRLTVET 284


>gi|237743964|ref|ZP_04574445.1| D-alanine-D-alanine ligase [Fusobacterium sp. 7_1]
 gi|229432995|gb|EEO43207.1| D-alanine-D-alanine ligase [Fusobacterium sp. 7_1]
          Length = 287

 Score =  280 bits (716), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 105/296 (35%), Positives = 165/296 (55%), Gaps = 15/296 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59
           +AV MGG SSE+E+SL SG+A   +L+  G+    + +D ++        + DLA+ VLH
Sbjct: 3   IAVFMGGTSSEKEISLKSGEAVLESLKKQGYDAYGVILDEKNQVTAFLDNEYDLAYLVLH 62

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G  GE+G +QA+L++L   YT SG+LASA++MDK ++KQ+  S G+ V  +         
Sbjct: 63  GGNGENGKIQAVLDILGKKYTGSGVLASAITMDKDKTKQIAQSVGIRVPKAY------RT 116

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
            + +   P +IKP+  GSS G+ +    +     + + +      + +IE Y+ G ELT 
Sbjct: 117 VEEIERFPVIIKPVDEGSSKGVFLCNNREEAEEAVKKLA------RPIIEDYIVGEELTV 170

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
           GV+   +L V +I       Y Y+ KY+   S H  PAKI    YKE  ++A   H   G
Sbjct: 171 GVLNGKALGVLKIIPQADVLYDYDSKYADGGSIHEFPAKIEDKSYKEAMKIAEKVHSEFG 230

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
            +GISRSDF+      ++++LE+N  PGMT  S+ P++A   GY+F +++   VE 
Sbjct: 231 MKGISRSDFIL--SDGELYFLEVNSSPGMTKTSLIPDLATLKGYTFDDVVRITVET 284


>gi|237739358|ref|ZP_04569839.1| D-alanine-D-alanine ligase [Fusobacterium sp. 2_1_31]
 gi|229422966|gb|EEO38013.1| D-alanine-D-alanine ligase [Fusobacterium sp. 2_1_31]
          Length = 287

 Score =  280 bits (716), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 109/296 (36%), Positives = 163/296 (55%), Gaps = 15/296 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV-LAHLKPDLAFNVLH 59
           +AV MGG SSE+E+SL SG+A   +L+  G+    + +D +  +        DLA+ VLH
Sbjct: 3   IAVFMGGTSSEKEISLRSGEAVLESLQRQGYDAYGVVLDENNQVTAFLENDYDLAYLVLH 62

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G  GE+G +QA+L++L   YT SG+LASAL+MDK ++KQ+  S G+ V  S        D
Sbjct: 63  GGNGENGKIQAVLDILGKKYTGSGVLASALTMDKNKTKQIAESIGIRVPKSY------RD 116

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
              +   P +IKP+  GSS G+ +    +     L +        + +IE Y+ G ELT 
Sbjct: 117 LDSIERFPVIIKPVDEGSSKGLFLCNNKEEAGEALKKLR------KPIIEDYIVGEELTV 170

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
           GV+   +L V +I       Y Y+ KY+   S H  PAKI    YKE  ++A   H+   
Sbjct: 171 GVLNGKALGVLKIIPQADVLYDYDSKYAKGGSIHEFPAKIEDKSYKEAMKIAERIHKEFK 230

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
            +GISRSDF+      K+++LE+N  PGMT  S+ P++A   GY+F +++   VE 
Sbjct: 231 MKGISRSDFILSE--GKLYFLEVNSSPGMTKTSLIPDLATLQGYTFDDVVRLTVET 284


>gi|262066312|ref|ZP_06025924.1| D-alanine--D-alanine ligase [Fusobacterium periodonticum ATCC
           33693]
 gi|291380007|gb|EFE87525.1| D-alanine--D-alanine ligase [Fusobacterium periodonticum ATCC
           33693]
          Length = 287

 Score =  280 bits (716), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 108/296 (36%), Positives = 164/296 (55%), Gaps = 15/296 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV-LAHLKPDLAFNVLH 59
           +AV MGG SSE+E+SL SG+A   +L+  G+    + +D +  +        DLA+ VLH
Sbjct: 3   IAVFMGGTSSEKEISLKSGEAVLESLQRQGYDAYGVVLDETNQVTAFLDNDYDLAYLVLH 62

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G  GE+G +QA+L++L   YT SG+LASAL+MDK ++KQ+  + G+ V  S        D
Sbjct: 63  GGNGENGKIQAVLDILGKKYTGSGVLASALTMDKNKTKQIAENIGIRVPKSY------AD 116

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
            + +   P +IKP+  GSS G+ +    +     L +        + +IE Y+ G ELT 
Sbjct: 117 LESIERFPVIIKPVDEGSSKGLFLCNNKEEAGEALKKVK------KPIIEDYIVGEELTV 170

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
           GV+   +L V +I       Y Y+ KY+   S H  PAKI    YKE  ++A   H+   
Sbjct: 171 GVLNGKALGVLKIIPQADVLYDYDSKYAKGGSIHEFPAKIEDKSYKEAMKIAEKIHKEFK 230

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
            +GISRSDF+      K+++LE+N  PGMT  S+ P++A   GY+F +++   VE 
Sbjct: 231 MKGISRSDFILSE--GKLYFLEVNSSPGMTKTSLIPDLATLQGYTFDDVVRLTVET 284


>gi|260578997|ref|ZP_05846899.1| D-alanine--D-alanine ligase [Corynebacterium jeikeium ATCC 43734]
 gi|258602862|gb|EEW16137.1| D-alanine--D-alanine ligase [Corynebacterium jeikeium ATCC 43734]
          Length = 373

 Score =  280 bits (716), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 96/365 (26%), Positives = 156/365 (42%), Gaps = 71/365 (19%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------LAHLKPD 52
           +AVL GG S+E  VS  S  A    L+   ++V  + +  +   V        L     D
Sbjct: 13  VAVLYGGQSTEHSVSCISAGAVIDHLDPEIYEVVPVGITEAGAWVPGTTDTSQLRADGRD 72

Query: 53  L-----------------------------------------AF-------NVLHGNFGE 64
           +                                          F        VLHG  GE
Sbjct: 73  MPRVEDGGVHVQLTFGGAGTAGSAGSGAAGEMRYVTGPQAGEVFAQVDVVFPVLHGVNGE 132

Query: 65  DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFTMDSQ 121
           DG VQ +L+L  + Y  +G+LASA  MDK  +K++    G+PV   +++      T + +
Sbjct: 133 DGTVQGVLDLAGVRYVGNGVLASAAGMDKDFTKRLAREAGIPVGEELILLQPRELTAEEK 192

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
             +  P  +KP +GGSS+GI  +   +    D     +++H +++++E  + G E+ CGV
Sbjct: 193 ARLGLPVFVKPARGGSSIGISKVDSWEEF--DAAVDLAFSHDNKVIVEAMIHGAEVECGV 250

Query: 182 MGDASLDVTEIAVP--------KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           +  A   +                 FY ++ KY     +  +PA +P +  KE+++LA  
Sbjct: 251 LQHADGSIVSSVPAMLNGTEDGAEGFYGFDAKYVDSTVSATIPAPLPAETLKEIRQLAIR 310

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
              A+GC GI+R DF            EIN  PG TP+S++P+M A  G SF +L+  ++
Sbjct: 311 TFNALGCDGIARVDFF--ATENGPVLNEINTMPGFTPISMYPKMFAADGVSFGDLVSALI 368

Query: 294 EDASC 298
             A  
Sbjct: 369 ARALA 373


>gi|256027423|ref|ZP_05441257.1| D-alanine--D-alanine ligase [Fusobacterium sp. D11]
 gi|289765386|ref|ZP_06524764.1| D-alanine-D-alanine ligase [Fusobacterium sp. D11]
 gi|289716941|gb|EFD80953.1| D-alanine-D-alanine ligase [Fusobacterium sp. D11]
          Length = 287

 Score =  280 bits (716), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 105/296 (35%), Positives = 165/296 (55%), Gaps = 15/296 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59
           +AV MGG SSE+E+SL SG+A   +L+  G+    + +D ++        + DLA+ VLH
Sbjct: 3   IAVFMGGTSSEKEISLKSGEAVLESLKKQGYDAYGVILDEKNQVTAFLDNEYDLAYLVLH 62

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G  GE+G +QA+L++L   YT SG+LASA++MDK ++KQ+  S G+ V  +         
Sbjct: 63  GGNGENGKIQAVLDILGKKYTGSGVLASAITMDKDKTKQIAQSVGIKVPKAY------RT 116

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
            + +   P +IKP+  GSS G+ +    +     + + +      + +IE Y+ G ELT 
Sbjct: 117 VEKIERFPVIIKPVDEGSSKGVFLCNNREEAEEAVKRLA------RPIIEDYIVGEELTV 170

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
           GV+   +L V +I       Y Y+ KY+   S H  PAKI    YKE  ++A   H   G
Sbjct: 171 GVLNGKALGVLKIIPQADVLYDYDSKYADGGSIHEFPAKIEDKSYKEAMKIAEKVHSEFG 230

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
            +GISRSDF+      ++++LE+N  PGMT  S+ P++A   GY+F +++   VE 
Sbjct: 231 MKGISRSDFIL--SDGELYFLEVNSSPGMTKTSLIPDLATLKGYTFDDVVRITVET 284


>gi|298208167|ref|YP_003716346.1| D-alanylalanine synthetase [Croceibacter atlanticus HTCC2559]
 gi|83848088|gb|EAP85958.1| D-alanylalanine synthetase [Croceibacter atlanticus HTCC2559]
          Length = 324

 Score =  280 bits (716), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 93/324 (28%), Positives = 165/324 (50%), Gaps = 34/324 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40
           +A+ MGG SSE ++SL+SG      ++   +   ++ +                    D 
Sbjct: 5   VAIAMGGYSSEFQISLNSGNVVYKHIDLEKYTPYRVHILKEEWLAFDDENHSYVINKNDF 64

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           S       ++ D+ FN++HG  GEDG +QA LELL IP T     ++AL+ +K  +  V+
Sbjct: 65  SFIKQGKTIRFDVVFNIIHGTPGEDGKLQAYLELLNIPQTACDFYSAALTFNKRDTISVL 124

Query: 101 SSCGVPVCPSILVNRFTM----DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
              G+    ++ +N+            +  P  +K  K GSS GI  +   +  P  L  
Sbjct: 125 KPYGIKTATNVFINKGDTVNVNQIISKVGLPCFVKANKAGSSFGISKVYNAEEFPKALDV 184

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNST 212
             ++   D++L+E ++DG E++ GV+       +L +TEI V ++DF+ YE KY+   S 
Sbjct: 185 --AFKEDDEVLVESFLDGTEVSVGVITYNTTITALPITEI-VSENDFFDYEAKYN-GQSQ 240

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
            + PA+I      EVQ++A   ++ +  +G++R++F+F   + +  +LE+N  PG++  S
Sbjct: 241 EITPARISDAQRDEVQQIAIKIYKTLKLKGLTRAEFIFH--NNEPHFLEVNTCPGLSEAS 298

Query: 273 IFPEMAAYAGYSFRELLLWMVEDA 296
           I P+ AA AG S ++L   ++  A
Sbjct: 299 IIPQQAAEAGISLKDLFSNVIAAA 322


>gi|28378923|ref|NP_785815.1| D-alanine--D-alanine ligase [Lactobacillus plantarum WCFS1]
 gi|254557128|ref|YP_003063545.1| D-alanine-D-alanine ligase [Lactobacillus plantarum JDM1]
 gi|308181131|ref|YP_003925259.1| D-alanine--D-alanine ligase [Lactobacillus plantarum subsp.
           plantarum ST-III]
 gi|38257320|sp|Q88UV8|DDL_LACPL RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|28271760|emb|CAD64666.1| D-alanine--D-alanine ligase [Lactobacillus plantarum WCFS1]
 gi|254046055|gb|ACT62848.1| D-alanine-D-alanine ligase [Lactobacillus plantarum JDM1]
 gi|308046622|gb|ADN99165.1| D-alanine--D-alanine ligase [Lactobacillus plantarum subsp.
           plantarum ST-III]
          Length = 370

 Score =  280 bits (716), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 92/343 (26%), Positives = 166/343 (48%), Gaps = 52/343 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS-----------------VG 43
           + +L GG SSE +VS  S      A++   +++    + ++                   
Sbjct: 9   VGMLFGGNSSEHDVSKRSAHNIYDAMDKNKYEIDLFLITKNGIVLSDAATRRVFDGEPED 68

Query: 44  LVLAHLKP--------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
            V+A   P                    D+ + V+HGN GEDG +Q + +LL+ PY  SG
Sbjct: 69  QVVAEEMPKLDMSDPLAPIKNLTLAKDIDIFYPVVHGNLGEDGTLQGLFKLLKKPYVGSG 128

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVIKPLKGGS 137
           +LASA S DK  +KQ+++   +     ++V     D       Q  +     IKP   GS
Sbjct: 129 VLASAASFDKDITKQILTHHHIQNTKYVVVTPENRDQMTYAYLQAHVGDHLFIKPANQGS 188

Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVT---EIA 193
           S+GI   + +Q     L  +  +++  ++L+E+ +D   E+ C ++G+ +   +    I 
Sbjct: 189 SIGIHKAENEQEYLDGLADAFKYDY--KILVEESIDNPREVECSILGNENPKASKLGAID 246

Query: 194 VPKSD-FYSYELKYSSLNS-THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
           VPK+D FY Y  K+   +  T  LP ++P D+ K +Q+++  A +A+G +G++R DFL  
Sbjct: 247 VPKTDTFYDYNNKFVDASGVTFELPVELPADLTKRIQQMSLDAFKALGLKGMARVDFLVS 306

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
               + +  EIN  PG T +S++P++   +G S+  L+  +++
Sbjct: 307 E-DGEPYLGEINTLPGFTNISLYPKLWEVSGISYTALIDQLIQ 348


>gi|116493050|ref|YP_804785.1| D-alanine--D-alanine ligase [Pediococcus pentosaceus ATCC 25745]
 gi|122265486|sp|Q03EM9|DDL_PEDPA RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|116103200|gb|ABJ68343.1| D-alanine--D-alanine ligase [Pediococcus pentosaceus ATCC 25745]
          Length = 351

 Score =  280 bits (716), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 103/342 (30%), Positives = 165/342 (48%), Gaps = 54/342 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID----------------------- 37
           +AVL GG S+ER VSLSSG    +AL   G+  + ID                       
Sbjct: 3   IAVLAGGKSTERNVSLSSGSKITNALRSKGYDATMIDLFLGYELEDGQSYEDVFKSSNTS 62

Query: 38  -------------------VDRSVGLVLAHLKP-----DLAFNVLHGNFGEDGLVQAILE 73
                               D +VGL   ++ P     D  F  LHG  GE+G VQA+L+
Sbjct: 63  TDYEISDAVLTEEDIEELRTDGTVGLFGKNVLPILQAADFVFLALHGGDGENGKVQAVLD 122

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN-RFTMDSQHLISPPYVIKP 132
           L  I YT SG LAS ++MDK  SK+++    +      +++ +  +  Q     P V+KP
Sbjct: 123 LNHIKYTGSGSLASGIAMDKAISKEIMLYNNIKTAQFAVLHAKDGIHPQLAFDYPMVVKP 182

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192
             GGSS+G  ++  +  +        ++   D++++E+++ G E + GV+   ++   EI
Sbjct: 183 NSGGSSIGTRIVHDEAEL--AESLKDAYRFDDEIIVEEFITGREFSLGVVNGQAMPAIEI 240

Query: 193 AVPKSDFYSYELKYSSLNST-HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
            V    +Y YE K+ + ++T  V P +I  D++ E++R+A     A+G     R DFL +
Sbjct: 241 VV-NDGWYDYEHKFQTGSTTKFVTPPEIEDDVHDEMKRVAVQTMDALGMTNYGRVDFLTN 299

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
                V+ +E N  PGMTP+S+ P+ A  AG S+ +L   +V
Sbjct: 300 DTG--VYVIEANNLPGMTPLSLLPQEAEAAGISYEDLCESIV 339


>gi|254526519|ref|ZP_05138571.1| D-alanine--D-alanine ligase [Prochlorococcus marinus str. MIT 9202]
 gi|221537943|gb|EEE40396.1| D-alanine--D-alanine ligase [Prochlorococcus marinus str. MIT 9202]
          Length = 355

 Score =  280 bits (716), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 92/345 (26%), Positives = 161/345 (46%), Gaps = 54/345 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASA----LEDAGFKVSQIDVDR---------------- 40
           + ++ GG S+E EVS+SS K    A    +    FKV    +D+                
Sbjct: 9   IGLIFGGYSNEHEVSISSAKTVFQAFNSEINKKRFKVKAFYIDKYGDWLDNDLSEKILND 68

Query: 41  ------------------SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
                             +    +     D+ F +LHG  GEDG +  +L+  + P    
Sbjct: 69  EIKSQNIKKQEIVNQQKINFLDGIEFQNIDVWFPLLHGLNGEDGSIHGLLQYTKKPIVGC 128

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL-----------ISPPYVIK 131
           GIL SA+ MDK+  K + S+  +P    +      ++ + +           ++ P+ +K
Sbjct: 129 GILGSAIGMDKIMMKTIFSNLKIPQVNYLAFQNEDLNDREVKKKVINEILKKLNFPFFVK 188

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSSLGI  +  +  I   L ++       ++L+E+ ++  E+ CG++G++ L  +E
Sbjct: 189 PSNSGSSLGISKVINESEILHSLEKAQ--KIDSRILVEEGLEVREIECGIIGNSELLTSE 246

Query: 192 IAVPK--SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
           I   K  SD+Y Y+ KY S N   ++PA+I   I KE++++A  + +A+   G +R DF 
Sbjct: 247 IGEVKYESDWYDYDSKYYSNN-KIIIPAEIDSKITKEIKKIAIQSCKALNIFGFARVDFF 305

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            +  S K+   EIN  PG T  S+FP +   +G +  +L+  +V+
Sbjct: 306 LEKYSNKILLNEINTIPGFTTNSMFPMLWKASGLNIEQLVAKLVD 350


>gi|254967059|gb|ACT97567.1| putative D-alanine-D-alanine ligase [uncultured organism]
          Length = 341

 Score =  280 bits (716), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 87/322 (27%), Positives = 156/322 (48%), Gaps = 31/322 (9%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40
           +A++ GG +SE  VSL S +   S ++   + +  +++                    D 
Sbjct: 5   IAIVAGGDTSEIVVSLRSAQGIYSFIDKEKYNLYIVEMEGRRWEVQLPDGNKVPVDRNDF 64

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           S       +  D A+  +HG  GEDG +Q   +++ IPY+  G+LA+A++ DK    Q +
Sbjct: 65  SFTNGTEKVVFDFAYITIHGTPGEDGRLQGYFDMMRIPYSCCGVLAAAITYDKFTCNQYL 124

Query: 101 SSCGVPVCPSILVNR----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
            + GV +  S+L+ +       +    I  P  IKP  GGSS G+  +K  + I   +++
Sbjct: 125 KAFGVRIAESLLLRQGQSVSDEEVVEKIGLPCFIKPSLGGSSFGVTKVKTKEQIQPAIVK 184

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA---VPKSDFYSYELKYSSLNSTH 213
             ++   +++++E ++DG ELTCG        V       V  ++F+ Y+ KY+      
Sbjct: 185 --AFGEAEEVIVEAFMDGTELTCGCYKTKEKSVIFPPTEVVTHNEFFDYDAKYN-GQVDE 241

Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273
           + PA+I  ++ K VQ L    +  +GC GI R D++      K+  LE+N  PGMT  S 
Sbjct: 242 ITPARISDELTKRVQMLTSAIYDILGCSGIIRVDYIITA-GEKLNLLEVNTTPGMTTTSF 300

Query: 274 FPEMAAYAGYSFRELLLWMVED 295
            P+    AG   ++++  ++E+
Sbjct: 301 IPQQVRAAGLDIKDVMTDIIEN 322


>gi|161779867|gb|ABX79424.1| VanC2/3 [Enterococcus casseliflavus]
          Length = 350

 Score =  280 bits (716), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 92/345 (26%), Positives = 164/345 (47%), Gaps = 52/345 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDA--GFKVSQIDVDRSV---------------- 42
           +A++ GG S E  VSL+S  +   AL+ +   + +S I +                    
Sbjct: 4   IAIIFGGNSPEYTVSLASATSAIEALQSSPYDYDLSLIGIAPDAMDWYLYTGELENIRQD 63

Query: 43  -------------------GLVLAHLK----PDLAFNVLHGNFGEDGLVQAILELLEIPY 79
                              G  L+  +    PD+ F ++HG +GEDG +Q + EL+++PY
Sbjct: 64  TWLLDTKQKQKIQPLFEGNGFWLSEEQQTLVPDVLFPIMHGKYGEDGSIQGLFELMKLPY 123

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIKPL 133
              G+ +SAL M+K    Q  ++ GV   P+IL+       + +         P   KP 
Sbjct: 124 VGCGVASSALCMNKWLLHQAAAAIGVQSAPTILLTNQANQQEQIEAFIQTHGFPVFFKPN 183

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
           + GSS GI  +   + I   L +  ++ +   +L+++ + G+E+ CG++G+ SL V    
Sbjct: 184 EAGSSKGITKVTCVEEIASALKE--AFTYCSAVLLQKNIVGVEIGCGILGNDSLTVGACD 241

Query: 194 VP--KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
               +  F+ +E KY  +++   +PA +P  I  +V+  A L ++++G +G++R DF   
Sbjct: 242 AISLEDGFFDFEEKYQLISAKITVPAPLPETIETKVKEQAQLLYRSLGLKGLARIDFFVT 301

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
               +++  EIN  PG T  S +P M A  G S++ELL  ++  A
Sbjct: 302 DQ-GELYLNEINTMPGFTSHSRYPAMMAAVGLSYQELLQKLLILA 345


>gi|317122985|ref|YP_004102988.1| D-alanine--D-alanine ligase [Thermaerobacter marianensis DSM 12885]
 gi|315592965|gb|ADU52261.1| D-alanine--D-alanine ligase [Thermaerobacter marianensis DSM 12885]
          Length = 473

 Score =  280 bits (716), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 85/256 (33%), Positives = 143/256 (55%), Gaps = 13/256 (5%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+ F VLHG FGEDG VQ +LEL  IPY  +G+L SA+ MDK   K++  + G+PV P +
Sbjct: 167 DVVFPVLHGTFGEDGTVQGLLELAGIPYVGAGVLGSAVGMDKAVMKELFRARGLPVVPFL 226

Query: 112 LVNRFTM---------DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
           +V              + +  +  P   KP   GSS+ I   +  + +   L ++ +++ 
Sbjct: 227 VVTAARWRREPAAVIDEIEGALGYPCFTKPANLGSSVAIRRCRDRRQLEAGLAEAFAYDR 286

Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVTEIAV--PKSDFYSYELKYSSLNSTHVLPAKIP 220
             ++++E+ VD  EL   V+G+     +      P+++FY+YE KY+   +  ++PA +P
Sbjct: 287 --KVVVERGVDARELEISVLGNDEPVASLPGEIRPRAEFYTYEAKYTEGGAELIVPASLP 344

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280
             +  E+QRLA  A QAI   G++R DF  +  + ++   EIN  PG T +S++P++   
Sbjct: 345 PRLVAEMQRLAVAAFQAIDAAGLARVDFFLERATGRLLVNEINTIPGFTALSMYPKLWEA 404

Query: 281 AGYSFRELLLWMVEDA 296
           AG S+R+L+  ++E A
Sbjct: 405 AGLSYRDLITRLIELA 420



 Score = 65.9 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 25/48 (52%)

Query: 1  MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH 48
          + +L GG S E EVSL S ++   A++   F+   I + R+   +L  
Sbjct: 49 VGILFGGRSGEHEVSLMSARSVYRAIDRERFEPVPIGITRAGQWILPR 96


>gi|296130149|ref|YP_003637399.1| D-alanine/D-alanine ligase [Cellulomonas flavigena DSM 20109]
 gi|296021964|gb|ADG75200.1| D-alanine/D-alanine ligase [Cellulomonas flavigena DSM 20109]
          Length = 389

 Score =  279 bits (715), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 97/355 (27%), Positives = 151/355 (42%), Gaps = 65/355 (18%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50
           + VL GG S E  +S ++      A++   + V  + +      VLA             
Sbjct: 27  VMVLFGGRSGEHAISCATAGGVLRAIDRDRYDVVAVGITSDGRWVLADDDADHWAIRDGR 86

Query: 51  ------------------------------------PDLAFNVLHGNFGEDGLVQAILEL 74
                                                D+ F +LHG FGEDG +Q +LEL
Sbjct: 87  LPRVEDTATHVLLPQGTTDREVQVLRDGVLGAPLGAVDVVFPLLHGPFGEDGTLQGMLEL 146

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL-------ISPP 127
            ++ Y  SG+LASA+ MDK   K V++  G+ V P  ++                 +  P
Sbjct: 147 ADVRYVGSGVLASAVGMDKHMMKLVLAGSGLAVGPFRVLPPGREPDAATLDAVVADLGLP 206

Query: 128 YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL 187
             +KP + GSSLGI  +       L    +++  H  ++++E  + G E+ CGV+G  S 
Sbjct: 207 LFVKPARAGSSLGISRVDDK--ADLADAIAAARVHDPKVIVEAALFGREVECGVLGGRSG 264

Query: 188 DVTEIAVP--------KSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
                ++P        +  FY +E KY      T   PA +P D+   VQ +A  A +A+
Sbjct: 265 APPRASLPGEIVVTDARHSFYDFEAKYLDEAGVTLSCPADLPDDVVARVQDVAVRAFEAV 324

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           GC G++R D    P   +V   EIN  PG TP S++P M A +G  +  L+  +V
Sbjct: 325 GCEGLARVDVFVTP-DGEVVVNEINTMPGFTPYSMYPRMWAVSGLDYASLVDELV 378


>gi|160888048|ref|ZP_02069051.1| hypothetical protein BACUNI_00456 [Bacteroides uniformis ATCC 8492]
 gi|156862547|gb|EDO55978.1| hypothetical protein BACUNI_00456 [Bacteroides uniformis ATCC 8492]
          Length = 326

 Score =  279 bits (715), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 90/323 (27%), Positives = 155/323 (47%), Gaps = 33/323 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40
           +A++ GG +SE  VSL S +   S ++   + +  +++                    D 
Sbjct: 5   IAIVAGGDTSEFHVSLRSAQGIYSFIDKEKYTLYIVEMHGLDWHVQLPDGAKTPVDRNDF 64

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           S  L    +  D A+  +HG  GEDG +Q   ++L IPY+  G+LA++L+ DK    Q +
Sbjct: 65  SFVLDGEKVTFDFAYITIHGTPGEDGRLQGYFDMLHIPYSCCGVLAASLTYDKFACNQYL 124

Query: 101 SSCGVPVCPSILVNRF----TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
              GV +  S+L+         D    I  P  IKP  GGSS G+  +   + I   + +
Sbjct: 125 KGFGVRIAESLLLRGGQSVTDEDVMEKIGLPCFIKPSLGGSSFGVTKVTAKEQIQPAIAK 184

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNST 212
             ++    ++L+E ++DG E+TCG            +TE+ V  ++++ YE KY+   S 
Sbjct: 185 --AFAEAQEVLVEAFMDGTEITCGCYKTKDKSVVFPITEV-VSHNEYFDYEAKYN-GASD 240

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
            + PA+I  D+ + VQ L    +  +G  GI R D++      K+  LE+N  PGMT  S
Sbjct: 241 EITPARISDDLTRRVQTLTSAIYDILGAYGIIRVDYIITE-GEKINLLEVNTTPGMTATS 299

Query: 273 IFPEMAAYAGYSFRELLLWMVED 295
             P+    AG   ++++  ++E+
Sbjct: 300 FIPQQVRAAGMEMKDVMTDIIEN 322


>gi|58336484|ref|YP_193069.1| D-alanyl-alanine synthetase A [Lactobacillus acidophilus NCFM]
 gi|227903036|ref|ZP_04020841.1| d-alanine-d-alanine ligase [Lactobacillus acidophilus ATCC 4796]
 gi|81311548|sp|Q5FMN6|DDL_LACAC RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|58253801|gb|AAV42038.1| d-alanine-d-alanine ligase [Lactobacillus acidophilus NCFM]
 gi|227869210|gb|EEJ76631.1| d-alanine-d-alanine ligase [Lactobacillus acidophilus ATCC 4796]
          Length = 360

 Score =  279 bits (715), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 89/340 (26%), Positives = 150/340 (44%), Gaps = 49/340 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           + ++ GG SSE EVS+ SG     A++   F V  I +                      
Sbjct: 7   VGLIFGGNSSEYEVSIVSGHNIYKAIDKDKFDVHPIWITNEGYFASEEESFKVLEDPSYQ 66

Query: 52  ----------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
                                 D+ F ++HGN GEDG++Q +  L+  P+    +LA+A 
Sbjct: 67  VENPHKVNNISNIIELKNLPEIDVFFPIVHGNLGEDGVLQGLFRLMNKPFVGDDVLAAAA 126

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-----------QHLISPPYVIKPLKGGSS 138
           +MDK  +K +    GVPV   I + RF  D               +     +KP   GSS
Sbjct: 127 TMDKEFTKILAQRVGVPVADWISIKRFEYDDKNNDKLNYEKVAEKLGHDMFVKPSNQGSS 186

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL---DVTEIAVP 195
           +G+  +   +          ++ + D++L+E+ V G E+   V+G+       V +I   
Sbjct: 187 VGVNHVTNAEEYAA--ALEEAFKYDDKVLVEETVPGTEVETAVLGNDKPIVAGVGQITNA 244

Query: 196 KSDFYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
           K  FY+YE KY   +++ +  PA +P DI   V+  A   ++   C G++R D +  P  
Sbjct: 245 KGSFYTYENKYDDNSTSKLQIPADLPQDIVDTVRENARKVYEITECSGMARIDSMLTP-D 303

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            KV   E+N  PG T +S++P++   AG  + EL+  +++
Sbjct: 304 GKVVLTEVNALPGFTNISMYPKLFEEAGIPYTELITRLIQ 343


>gi|257877594|ref|ZP_05657247.1| ligase [Enterococcus casseliflavus EC20]
 gi|257811760|gb|EEV40580.1| ligase [Enterococcus casseliflavus EC20]
          Length = 350

 Score =  279 bits (715), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 92/345 (26%), Positives = 164/345 (47%), Gaps = 52/345 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDA--GFKVSQIDVDRSV---------------- 42
           +A++ GG S E  VSL+S  +   AL+ +   + +S I +                    
Sbjct: 4   IAIIFGGNSPEYTVSLASATSAIEALQSSPYDYDLSLIGIAPDAMDWYLYTGELENIRQD 63

Query: 43  -------------------GLVLAHLK----PDLAFNVLHGNFGEDGLVQAILELLEIPY 79
                              G  L+  +    PD+ F ++HG +GEDG +Q + EL+++PY
Sbjct: 64  TWLLDTKHKQKIQPLFEGNGFWLSEEQQTLVPDVLFPIMHGKYGEDGSIQGLFELMKLPY 123

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIKPL 133
              G+ +SAL M+K    Q  ++ GV   P+IL+       + +         P   KP 
Sbjct: 124 VGCGVASSALCMNKWLLHQAAAAIGVQSAPTILLTNQANQQEQIEAFIQTHGFPVFFKPN 183

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
           + GSS GI  +   + I   L +  ++ +   +L+++ + G+E+ CG++G+ SL V    
Sbjct: 184 EAGSSKGITKVTCVEEIASALKE--AFTYCSAVLLQKNIVGVEIGCGILGNDSLTVGACD 241

Query: 194 VP--KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
               +  F+ +E KY  +++   +PA +P  I  +V+  A L ++++G +G++R DF   
Sbjct: 242 AISLEDGFFDFEEKYQLISAKITVPAPLPETIETKVKEQAQLLYRSLGLKGLARIDFFVT 301

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
               +++  EIN  PG T  S +P M A  G S++ELL  ++  A
Sbjct: 302 DQ-GELYLNEINTMPGFTSHSRYPAMMAAVGLSYQELLQKLLILA 345


>gi|254303966|ref|ZP_04971324.1| D-alanine--D-alanine ligase [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
 gi|148324158|gb|EDK89408.1| D-alanine--D-alanine ligase [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
          Length = 287

 Score =  279 bits (715), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 105/296 (35%), Positives = 162/296 (54%), Gaps = 15/296 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59
           +AV MGG SSE+E+SL SG A   +L+  G+    + +D ++          DLA+ VLH
Sbjct: 3   IAVFMGGTSSEKEISLKSGAAVLESLKKQGYDTYGVILDEKNQVSAFVDNDYDLAYLVLH 62

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G  GE+G +QA+L++L   YT SG+LASA++MDK ++KQ+  S G+    S         
Sbjct: 63  GGNGENGKIQAVLDILGKKYTGSGVLASAITMDKNKTKQIAQSVGIKTPKSY------RT 116

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
            + +   P +IKP+  GSS G+ +    +     + + +      + +IE Y+ G ELT 
Sbjct: 117 VEEIERFPVIIKPVDEGSSKGLFLCNNKEEAQEAVKKLA------KPIIEDYIVGEELTV 170

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
           GV+   +L V +I       Y Y+ KY+   S H  PAKI    YKE  ++A   H   G
Sbjct: 171 GVLNGEALGVLKIIPQADVLYDYDSKYAKGGSIHEFPAKIENKSYKEAMKIAEKIHSEFG 230

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
            +GISRSDF+      ++++LE+N  PGMT  S+ P++A   GY+F +++   VE 
Sbjct: 231 MKGISRSDFILSE--GELYFLEVNSSPGMTKTSLIPDLATLKGYTFDDVVRITVET 284


>gi|323691440|ref|ZP_08105712.1| D-alanine-D-alanine ligase [Clostridium symbiosum WAL-14673]
 gi|323504486|gb|EGB20276.1| D-alanine-D-alanine ligase [Clostridium symbiosum WAL-14673]
          Length = 355

 Score =  279 bits (715), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 92/348 (26%), Positives = 150/348 (43%), Gaps = 56/348 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           + V+ GG SSE  VS  S     + ++   + V  + +      +L              
Sbjct: 6   ILVIFGGQSSEHIVSCMSAVNVINNIDRDTYDVLIVGITEEGHWLLVDSVEAIQDESWRD 65

Query: 47  ------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
                                     +K D AF VLHG +GEDG +Q + EL ++PY   
Sbjct: 66  GTVQAVLSPDATEKSVIVIDGAGIKKIKVDGAFPVLHGLYGEDGTIQGLFELAKLPYVGC 125

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD-----------SQHLISPPYVIK 131
           G+LASA+SMDK  +K +    GV       V +  +             +   + P  IK
Sbjct: 126 GVLASAVSMDKFFTKIIADRVGVRQAAYEPVMKEEIAGTEGMAEAVKRVEARFAYPVFIK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS G+   +  + +   L +++   H  ++L+E+ + G E+ C V G+    V  
Sbjct: 186 PSNAGSSRGVSKAENREQLTEGLTEAA--RHDRKILVEETIVGHEIECAVFGNGKEPVIA 243

Query: 192 IAVPK----SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
             V +    + FY +E KY +  S  V+  ++P D  + V+R A    +A+   G++R D
Sbjct: 244 SGVGEVLAAAQFYDFEAKYFNAESRTVVNPELPGDSAERVRRAAVEIFKAVDGYGLARVD 303

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           F        V + EIN  PG T +S++P +   AG S  EL+  ++E 
Sbjct: 304 FFVTK-DGDVVFNEINTMPGFTAISMYPMLFEAAGISKTELVGKLIEH 350


>gi|254495868|ref|ZP_05108778.1| D-alanine--D-alanine ligase A [Legionella drancourtii LLAP12]
 gi|254354904|gb|EET13529.1| D-alanine--D-alanine ligase A [Legionella drancourtii LLAP12]
          Length = 364

 Score =  279 bits (714), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 83/345 (24%), Positives = 153/345 (44%), Gaps = 51/345 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLA------------- 47
           + +L GG S E EVSL S  +  + L+   + +  + +D+     +              
Sbjct: 7   LVLLYGGKSGEHEVSLVSAASVLANLDVEKYHIIPVAMDKDGLFYVHQYEDLLAYKDKLP 66

Query: 48  ------------------HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
                              +  ++ F V+HG   EDG +Q +LEL  + Y    +L+SA+
Sbjct: 67  VVTERSKSLDNLLINGRLAIDAEVVFPVVHGPLYEDGCLQGLLELAGVAYVGCDVLSSAI 126

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVN---------RFTMDSQHLISPPYVIKPLKGGSSLG 140
            MDK  +++V    G+      L++         RF  D       P  +KP   GSS+G
Sbjct: 127 GMDKDMTRRVACIDGLKSARYKLLSWHAPLSERQRFCQDVAAEFGWPLFVKPCAMGSSVG 186

Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD-------VTEIA 193
           I   K    + + +  +    + +++L+E +V+G E+   V+  A            EI 
Sbjct: 187 IHKAKSMDELVVAVDDAL--RYDEEILVESFVEGREIELSVLESAVPSMAPRVSVAGEIR 244

Query: 194 VPK-SDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
           V     FYSY  KY  S  +  ++PA +   +  E+++ A      + C+G++R DF  +
Sbjct: 245 VHHPDGFYSYSAKYLESNQTDLLIPAALSTTLQAELKQAAADIFTRLKCKGMARIDFFVN 304

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             +  +++ EIN  PG T +S++P++   +G ++ +LL  ++  A
Sbjct: 305 DKTESIYFNEINTLPGFTSISMYPKLWQESGLAYPDLLDELIRIA 349


>gi|300775213|ref|ZP_07085075.1| D-alanine--D-alanine ligase [Chryseobacterium gleum ATCC 35910]
 gi|300505953|gb|EFK37089.1| D-alanine--D-alanine ligase [Chryseobacterium gleum ATCC 35910]
          Length = 329

 Score =  279 bits (714), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 98/325 (30%), Positives = 163/325 (50%), Gaps = 35/325 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           +AV+MGG S E  VSL SG+    +L+   + V ++ V +     L              
Sbjct: 8   VAVVMGGYSDEYVVSLKSGQLIYDSLDRNLYDVYKVVVLKDEWYFLGENDKKYAINRGDF 67

Query: 49  ---------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
                    L+ D+ FN++HG  GE+G++QA  + +   YT  G   SAL+ +K  +  V
Sbjct: 68  SVTLDNGETLQFDVCFNIIHGTPGENGILQAYWDAIGQKYTGCGFYQSALTFNKKDTLAV 127

Query: 100 VSSCGVPVCPSILVNRFT----MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
           +S  G+P   SI + +       +    +  P  +KP + GSSLGI  +K+   +     
Sbjct: 128 LSKYGIPSAKSIYLRKGEDINVDEIVSELKLPLFVKPNQSGSSLGISKVKEKSELIAA-- 185

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMG----DASLDVTEIAVPKSDFYSYELKYSSLNS 211
              ++   D++LIE +++G+E++ GV+        L +TEI VP ++F+ YE KY    S
Sbjct: 186 TEIAFKEDDEILIESFLNGMEVSVGVIDFKGETIVLGITEI-VPTNEFFDYEAKYE-GAS 243

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271
             + PA+I  +  K V+ +A  A+ ++G  G SRS+++   +    + LE+N  PG +P 
Sbjct: 244 EEITPARIDEETTKRVEEIAKRAYNSLGMSGFSRSEYIL--MDGIPYMLEMNTNPGFSPA 301

Query: 272 SIFPEMAAYAGYSFRELLLWMVEDA 296
           SI P+ A + G S  +L    VE A
Sbjct: 302 SILPQQAKHYGISIMDLCGNEVEKA 326


>gi|297243295|ref|ZP_06927229.1| D-alanine-D-alanine ligase (ATP-grasp enzyme) [Gardnerella
           vaginalis AMD]
 gi|296888702|gb|EFH27440.1| D-alanine-D-alanine ligase (ATP-grasp enzyme) [Gardnerella
           vaginalis AMD]
          Length = 380

 Score =  279 bits (714), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 90/372 (24%), Positives = 156/372 (41%), Gaps = 79/372 (21%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +  L GG + E  +S  S     SA+++  F + +I + +    ++    P         
Sbjct: 6   VVFLYGGKADEHSISCISAAGVLSAVDENRFDIVRIAITKQGEWIVGGEDPRNFRMEEGE 65

Query: 52  ---------------------------------------DLAFNVLHGNFGEDGLVQAIL 72
                                                  D  F VLHG  GEDG +Q +L
Sbjct: 66  LPVITKTAGTRDVVLDPAKGADGFLVRKADDTLESLGHIDAVFPVLHGPNGEDGTLQGLL 125

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------------ 120
           E++++PY   G+LASA  MDK  +KQ+  + G+ V P I ++     S            
Sbjct: 126 EMMQVPYVGCGVLASAACMDKYYAKQLFKAAGIDVAPGIALDARKFASDSTNRFAAYANE 185

Query: 121 ------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
                    +  P  +KP + GSS G+  ++   +  L      +  H  ++L+EQ ++ 
Sbjct: 186 MLAQVEAAKLEYPLFVKPSRAGSSFGVTKVESHDAKALAQAVFEASKHDWRVLVEQGINA 245

Query: 175 IELTCGVMGDASLDVTEIAVP-----------KSDFYSYELKYSSLNSTHVL-PAKIPLD 222
            E+ C V+     +  ++++P           +  FY ++ KY    ++HV  PA +P +
Sbjct: 246 REIECAVLAARDGEEPKVSLPGEIVLDKRQAGEDQFYDFDSKYMDSAASHVEVPADLPAE 305

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAG 282
             + V++ A  A +A   RG+SR D    P    V   EIN  PG TP+S++P+     G
Sbjct: 306 TLELVRKTALAAFKAADGRGLSRVDSFVTP-EGHVMINEINTMPGFTPISMYPKAWEATG 364

Query: 283 YSFRELLLWMVE 294
            S+ +L+  ++E
Sbjct: 365 ISYGDLITKLIE 376


>gi|161779864|gb|ABX79422.1| VanC4 [Enterococcus casseliflavus]
          Length = 350

 Score =  279 bits (714), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 94/342 (27%), Positives = 162/342 (47%), Gaps = 52/342 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDA--GFKVSQIDVDRSV---------------- 42
           +A++ GG SSE  VSL+S  +   AL+ +   + +S I +                    
Sbjct: 4   IAIIFGGNSSEYTVSLASATSAIEALQSSPYDYDLSLIGIAPDAMDWYLYTGELENIRQD 63

Query: 43  -------------------GLVLAHLK----PDLAFNVLHGNFGEDGLVQAILELLEIPY 79
                              G  L+  +    PD+ F ++HG +GEDG +Q + EL+++PY
Sbjct: 64  TWLLDTKHTQKIQPLFEENGFWLSEAQQTLVPDVLFPIMHGKYGEDGSIQGLFELMKLPY 123

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIKPL 133
              G+ ASAL M+K    Q  ++ GV   P+IL+       Q +         P   KP 
Sbjct: 124 VGCGVAASALCMNKWLLHQAAAAIGVQSAPTILLTNQDNQQQQIEAFIQTHGFPVFFKPN 183

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
           + GSS GI  +   + I   L ++ +  +   +L+++ + G+E+ CG++G+ SL V    
Sbjct: 184 EAGSSKGITKVTCVEEIAPALKEAFA--YCSAVLLQKNIAGVEIGCGILGNDSLTVGACD 241

Query: 194 VPK--SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
                  F+ +E KY  +++   +PA +P  I  +V+  A L + ++G +G++R DF   
Sbjct: 242 AISLVEGFFDFEEKYQLISAKITVPAPLPETIETKVKEQAQLLYHSLGLKGLARIDFFVT 301

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
               +++  EIN  PG T  S +P M A  G S++ELL  ++
Sbjct: 302 DQ-GELYLNEINTMPGFTSHSRYPAMMAAIGLSYQELLQKLL 342


>gi|254967107|gb|ACT97596.1| putative D-alanyl-alanine synthetase A [uncultured organism]
          Length = 325

 Score =  279 bits (714), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 91/324 (28%), Positives = 156/324 (48%), Gaps = 34/324 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40
           +A+LMGG SSE EVSL S       L+   ++   I +                    D 
Sbjct: 4   IAILMGGYSSEAEVSLKSAATVVECLDKNKYRPYPILIAKDRWVYTDPKGQEFPIDKNDF 63

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           S+ +    +    AFN +HG  GEDG +QA    + IP T   + ASAL+ +K     V+
Sbjct: 64  SLTIGGEKITFACAFNAIHGTPGEDGHLQAYFSFVGIPITGCSMYASALTFNKRDMLSVL 123

Query: 101 SSCGVPVCPSILVNR----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
              G+P   +  +NR     T +    +  P  +K  + GSS+G+     ++ I  D   
Sbjct: 124 KPYGIPRAKAYYLNRGEHFSTREIIKTVGLPCFVKANRSGSSIGVFKAYNEKDI--DEAI 181

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNST 212
             ++    +++IE+++ G E++ GV+        L +TEI V ++DF+ +E KY    S 
Sbjct: 182 EKAFEVDSEIIIEEFLKGTEVSVGVITYRGKKRVLPITEI-VSENDFFDHEAKYE-GKSQ 239

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
            + PA++  +  K+V+ +A   +  +  +G SRS+++   ++ +   LE+N  PG+T  S
Sbjct: 240 EITPARLSEEERKKVEEIALRVYNLLQMKGFSRSEYIL--VNGQPHLLEMNTTPGLTKAS 297

Query: 273 IFPEMAAYAGYSFRELLLWMVEDA 296
           I P+ A  AG +   L    +E+A
Sbjct: 298 ILPQQAKAAGITLANLFDNAIEEA 321


>gi|161779881|gb|ABX79433.1| VanC2/3 [Enterococcus casseliflavus]
          Length = 350

 Score =  278 bits (713), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 91/342 (26%), Positives = 161/342 (47%), Gaps = 52/342 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDA--GFKVSQIDVDRSV---------------- 42
           +A++ GG S E  VSL+S  +   AL+ +   + +S I +                    
Sbjct: 4   IAIIFGGNSPEYTVSLASATSAIEALQSSPYDYDLSLIGITPDAMDWYLYTGELENIRQD 63

Query: 43  -------------------GLVLAHLK----PDLAFNVLHGNFGEDGLVQAILELLEIPY 79
                              G  L+  +    PD+ F ++HG +GEDG +Q + EL+++PY
Sbjct: 64  TWLLDTKHKQKIQPLFEGNGFWLSEEQQTLVPDVLFPIMHGKYGEDGSIQGLFELMKLPY 123

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIKPL 133
              G+  SAL M+K    Q  ++ GV   P+IL+       + +         P   KP 
Sbjct: 124 VGCGVAGSALCMNKWLLHQAAAAIGVQSAPTILLTNQANQQEQIEAFIQTHGFPVFFKPN 183

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
           + GSS GI  +   + I   L +  ++ +   +L+++ + G+E+ CG++G+ SL V    
Sbjct: 184 EAGSSKGITKVTCVEEIASALKE--AFTYCSAVLLQKNIAGVEIGCGILGNDSLTVGACD 241

Query: 194 VPK--SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
                  F+ +E KY  +++   +PA +P  I  +V+  A L ++++G +G++R DF   
Sbjct: 242 AISLVDGFFDFEEKYQLISAKITVPAPLPETIETKVKEQAQLLYRSLGLKGLARIDFFVT 301

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
               +++  EIN  PG T  S +P M A  G S++ELL  ++
Sbjct: 302 DQ-GELYLNEINTMPGFTSHSRYPAMMAAVGLSYQELLQKLL 342


>gi|257069004|ref|YP_003155259.1| D-alanine--D-alanine ligase [Brachybacterium faecium DSM 4810]
 gi|256559822|gb|ACU85669.1| D-alanine--D-alanine ligase [Brachybacterium faecium DSM 4810]
          Length = 371

 Score =  278 bits (713), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 95/366 (25%), Positives = 164/366 (44%), Gaps = 69/366 (18%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +A+L GG S E  +S  +     +A++   F+V  + + R    +     P         
Sbjct: 5   VALLFGGRSGEHGISCVTAGGILAAIDRERFEVIALGITREGRWLHVSDDPSDWTLVDGR 64

Query: 52  ----------------------------------------DLAFNVLHGNFGEDGLVQAI 71
                                                   D+ + +LHG +GEDG VQ +
Sbjct: 65  APEIDPSGNEVLLPHSRHRPGERITLRTVRDGLIQDLADVDVFWPLLHGVYGEDGTVQGM 124

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTMDSQHLISP--- 126
           LE+L+IPY  SG+LASA +MDK  +K V+ + G+   P I+V  +R+  +S  + +    
Sbjct: 125 LEMLDIPYVGSGVLASAAAMDKAATKLVLRAAGLDCAPGIVVHEDRWAEESHRVATYLRR 184

Query: 127 ----PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
               P+ +KP + GSSLG+  +     +   + ++ +     ++L+E+ +D  E+ CGV+
Sbjct: 185 NHPLPWFVKPARAGSSLGVTRVTDPAQLEAAMKEAFA--EDPKVLVEEGLDAREVECGVL 242

Query: 183 GDA-------SLDVTEIAVPKSDFYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLA 234
             A       +L          +FY YE KY    +  +  PA +P  + +EV+  +  A
Sbjct: 243 QGADRQEPSTTLPGEVKVGRDLEFYDYEAKYFGKGTVSIDVPAALPDAVLEEVRETSCRA 302

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            +A+G  G++R D        +V   E+N  PG TP S+FP +    G S+ +L+  ++E
Sbjct: 303 FRALGLEGLARVDMFVT-SDHRVLINEVNTMPGFTPYSMFPVLWENMGLSYADLIAELIE 361

Query: 295 DASCLR 300
            A   R
Sbjct: 362 QARSRR 367


>gi|227871698|ref|ZP_03990109.1| D-alanine--D-alanine ligase [Oribacterium sinus F0268]
 gi|227842454|gb|EEJ52673.1| D-alanine--D-alanine ligase [Oribacterium sinus F0268]
          Length = 356

 Score =  278 bits (713), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 94/351 (26%), Positives = 153/351 (43%), Gaps = 59/351 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           + +L GG S+E EVS  S      A+    +KV  I + +S   +               
Sbjct: 6   LVLLFGGQSTEHEVSCRSVLTIKRAVNQEKYKVLCIGITKSGEWIPVEKEESIEDGSWKE 65

Query: 49  ---------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81
                                       K D+ F VLHG  GEDG +Q +LE+  IPY  
Sbjct: 66  SAERAMILPDAKLSSVLFLGKNGESHLEKIDVVFPVLHGKDGEDGTIQGLLEIARIPYVG 125

Query: 82  SGILASALSMDKMRSKQV----VSSCGVPVCPSILVNRFTMDSQHL--------ISPPYV 129
            G+L+SA+SMDK+ +K      ++  GV     I   R   ++Q          +S P  
Sbjct: 126 CGVLSSAISMDKVYTKMAVEKPLAKIGVRQAKYISFVRSQWENQEKIISKVEAALSYPVF 185

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           +KP   GSS G+   K  +++   +  + S +   ++L+E+ + G EL C V       V
Sbjct: 186 VKPSNAGSSCGVSKAKDREALKKAVENALSVDR--RVLVEESITGRELECAVFSGKEGQV 243

Query: 190 ----TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
                   +  ++FY Y+ KY++ +S   L   I  +I +++++ A     A+    +SR
Sbjct: 244 ESSSVGEILAAAEFYDYDAKYNNPDSKTELHPDISGEIEEKIRKAAETVFLAVDGFSLSR 303

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            DF       +V + EIN  PG T +S++P +    GYS  EL+  ++E A
Sbjct: 304 VDFFL--SGEEVIFNEINTMPGFTSISMYPMLFKKKGYSIEELVEKLLESA 352


>gi|255692431|ref|ZP_05416106.1| D-alanine--D-alanine ligase [Bacteroides finegoldii DSM 17565]
 gi|260621899|gb|EEX44770.1| D-alanine--D-alanine ligase [Bacteroides finegoldii DSM 17565]
          Length = 324

 Score =  278 bits (713), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 87/322 (27%), Positives = 156/322 (48%), Gaps = 31/322 (9%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40
           +A++ GG +SE  VSL S +   S ++   + +  +++                    D 
Sbjct: 5   IAIVAGGDTSEIVVSLRSAQGIYSFIDKEKYNLYIVEMEGRRWEVQLPDGNKVPVDRNDF 64

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           S       +  D A+  +HG  GEDG +Q   ++L IPY+  G+LA+A++ DK    Q +
Sbjct: 65  SFTNGTEKVVFDFAYITIHGTPGEDGRLQGYFDMLRIPYSCCGVLAAAITYDKFACNQYL 124

Query: 101 SSCGVPVCPSILVNR----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
            + GV +  S+L+ +       D    I  P  IKP  GGSS G+  +K  + I   +++
Sbjct: 125 KAFGVRIAESLLLRQGQSVSDEDVIEKIGLPCFIKPSLGGSSFGVTKVKTKEQIQPAVVK 184

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA---VPKSDFYSYELKYSSLNSTH 213
             ++   +++++E +++G ELTCG        V       V  ++F+ Y+ KY+      
Sbjct: 185 --AFGEAEEVIVEAFMEGTELTCGCYKTKEKSVVFPPTEVVTHNEFFDYDAKYN-GQVDE 241

Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273
           + PA+I  ++   VQ+L    +  +GC GI R D++      K+  LE+N  PGMT  S 
Sbjct: 242 ITPARISPELTGRVQKLTSAIYDILGCSGIIRVDYIVTA-GEKLNLLEVNTTPGMTATSF 300

Query: 274 FPEMAAYAGYSFRELLLWMVED 295
            P+    AG   ++++  ++E+
Sbjct: 301 IPQQVRAAGLDIKDVMTDIIEN 322


>gi|161779873|gb|ABX79428.1| VanC2/3 [Enterococcus casseliflavus]
          Length = 350

 Score =  278 bits (713), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 91/342 (26%), Positives = 161/342 (47%), Gaps = 52/342 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDA--GFKVSQIDVDRSV---------------- 42
           +A++ GG S E  VSL+S  +   AL+ +   + +S I +                    
Sbjct: 4   IAIIFGGNSPEYTVSLASATSAIEALQSSPYDYDLSLIGIAPDAMDWYLYTGELENIRQD 63

Query: 43  -------------------GLVLAHLK----PDLAFNVLHGNFGEDGLVQAILELLEIPY 79
                              G  L+  +    PD+ F ++HG +GEDG +Q + EL+++PY
Sbjct: 64  TWLLDTKQKQKIQPLFEGNGFWLSEEQQTLVPDVLFPIMHGKYGEDGSIQGLFELMKLPY 123

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIKPL 133
              G+  SAL M+K    Q  ++ GV   P+IL+       + +         P   KP 
Sbjct: 124 VGCGVAGSALCMNKWLLHQAAAAIGVQSAPTILLTNHANQQEQIEAFIQTHGFPVFFKPN 183

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
           + GSS GI  +   + I   L +  ++ +   +L+++ + G+E+ CG++G+ SL V    
Sbjct: 184 EAGSSKGITKVTCVEEIASALKE--AFTYCSAVLLQKNIAGVEIGCGILGNDSLTVGACD 241

Query: 194 VPK--SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
                  F+ +E KY  +++   +PA +P  I  +V+  A L ++++G +G++R DF   
Sbjct: 242 AISLVDGFFDFEEKYQLISAKITVPAPLPETIETKVKEQAQLLYRSLGLKGLARIDFFVT 301

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
               +++  EIN  PG T  S +P M A  G S++ELL  ++
Sbjct: 302 DQ-GELYLNEINTMPGFTSHSRYPAMMAAVGLSYQELLQKLL 342


>gi|171741431|ref|ZP_02917238.1| hypothetical protein BIFDEN_00514 [Bifidobacterium dentium ATCC
           27678]
 gi|283455223|ref|YP_003359787.1| D-alanine--D-alanine ligase [Bifidobacterium dentium Bd1]
 gi|171277045|gb|EDT44706.1| hypothetical protein BIFDEN_00514 [Bifidobacterium dentium ATCC
           27678]
 gi|283101857|gb|ADB08963.1| ddlA D-alanine--D-alanine ligase [Bifidobacterium dentium Bd1]
          Length = 378

 Score =  278 bits (713), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 86/370 (23%), Positives = 152/370 (41%), Gaps = 77/370 (20%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           + V+ GG + E  +S  S      AL+   F+   + + ++   ++    P         
Sbjct: 6   IVVMYGGKADEHSISCISTAGVLRALDVEKFEAIPVGITKTGQWIVDGEDPRGWNMSEGM 65

Query: 52  --------------------------------------DLAFNVLHGNFGEDGLVQAILE 73
                                                 D    VLHG +GEDG +Q + E
Sbjct: 66  PIVRKTDTAKDVVLDVALGQDGFFAREADGTLTSLGHVDAVLPVLHGPYGEDGTIQGLFE 125

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF----------------T 117
           ++ +PY   G+ ASA  MDK  +K ++++ G+PV P I ++                   
Sbjct: 126 MMNVPYVGCGVFASAACMDKHYTKVLLAAAGIPVAPGITLDARDCDAACAFAANGETMLA 185

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKD-QSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
                 +  P  +KP + GSS G+  ++++  +  L      + +H  ++L+EQ +D  E
Sbjct: 186 AVQAAGLRYPLFVKPSRAGSSFGVTKVEREGDAAELAAAVFEASHHDWRVLVEQGIDARE 245

Query: 177 LTCGVMGDASLDVTEIAVP-----------KSDFYSYELKYSSLNSTHVL-PAKIPLDIY 224
           + C V+   + D    + P              FY ++ KY    ++HV  PA +P +  
Sbjct: 246 IECAVLCPKAGDEPRASWPGEIVLDKRAGGDDQFYDFDSKYMDAEASHVEVPAALPQETL 305

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
           + V+  A  A +A+   G+SR D        KV   EIN  PG TP+S++P+     G S
Sbjct: 306 ELVRETAKKAFKAVDGTGLSRVDTFVTA-DGKVMVNEINTMPGFTPISMYPKAWDATGVS 364

Query: 285 FRELLLWMVE 294
           + +L+  ++E
Sbjct: 365 YTDLISTLIE 374


>gi|269129158|ref|YP_003302528.1| D-alanine/D-alanine ligase [Thermomonospora curvata DSM 43183]
 gi|268314116|gb|ACZ00491.1| D-alanine/D-alanine ligase [Thermomonospora curvata DSM 43183]
          Length = 319

 Score =  278 bits (713), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 100/307 (32%), Positives = 162/307 (52%), Gaps = 18/307 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VL GG+S EREVSL SG+  A AL          D D ++   L    PD  F VLHG
Sbjct: 12  VIVLAGGLSYEREVSLRSGRRVADALRALDVDAQVHDADATLLQTLQQAPPDAVFPVLHG 71

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
           + GEDG ++ +LEL+ +PY  +   A  ++ DK  +K VV + G+   PS+ + +     
Sbjct: 72  SMGEDGAIRDVLELVGVPYVGARPDACRVAWDKPTAKSVVRAAGLATPPSVTLPKEVFHD 131

Query: 121 Q----------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                        +  P  +KP +GGS+LG  V+++   +P  ++    + +GD  LIE+
Sbjct: 132 LGAAAVLECVVRRLGLPLFVKPARGGSALGASVVREAGDLPAAMV--GCFAYGDAALIER 189

Query: 171 YVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE 226
           +++G E+   V+       +L   EI VP  + Y Y  +Y + ++  V PA++P ++ + 
Sbjct: 190 HIEGTEVAVSVIERDGEPVALPAVEI-VPAGELYDYTARYDAGDTEFVTPARLPEEVARR 248

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
               A  AH+A+G R +SR+D + D    +V +LE+NV PGMT  S+FP   A AG +  
Sbjct: 249 AAEAAVTAHRALGLRDLSRTDLIVDEA-GQVHFLEVNVAPGMTETSLFPRAVAAAGLNLG 307

Query: 287 ELLLWMV 293
            +L  ++
Sbjct: 308 RILHDLI 314


>gi|225017225|ref|ZP_03706417.1| hypothetical protein CLOSTMETH_01151 [Clostridium methylpentosum
           DSM 5476]
 gi|224950000|gb|EEG31209.1| hypothetical protein CLOSTMETH_01151 [Clostridium methylpentosum
           DSM 5476]
          Length = 321

 Score =  278 bits (713), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 79/258 (30%), Positives = 133/258 (51%), Gaps = 14/258 (5%)

Query: 49  LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
           L+ D  F VLHG  GEDG +Q +L+L  IP+     L+SAL MDK  +  V+ + G+   
Sbjct: 66  LRIDCVFPVLHGRNGEDGTIQGLLKLAGIPFVGCDTLSSALCMDKAMTHTVLDAAGIRTA 125

Query: 109 PSILVNRFTMDS--------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160
               + +  +             +S P  +KP   GSS+GI      +S+   +    ++
Sbjct: 126 NWDQIQKTELPQLNEKCEQFIDKLSLPIFVKPANAGSSVGITKATDFESLREGIK--FAF 183

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA--VPKSDFYSYELKYSSLNSTHVLPAK 218
            H  ++++E+ + G E+ C V+G+ +   + +   +P ++FY Y+ KY S +S   +PA 
Sbjct: 184 THDSKVIVEEMLSGKEVECAVLGNDAPQASALGQIIPCNEFYDYDAKYQS-DSELKIPAD 242

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278
           +     + VQ  A  A+QA+GC G++R DF        V+  E N  PG T +S++P++ 
Sbjct: 243 LDEVTTRRVQETAVRAYQALGCSGLARVDFFVSE-DGTVYLNEPNTLPGFTSISMYPKLW 301

Query: 279 AYAGYSFRELLLWMVEDA 296
            Y+G  + ELL  +V  A
Sbjct: 302 EYSGLPYSELLERLVTLA 319


>gi|315652856|ref|ZP_07905829.1| D-alanine-D-alanine ligase [Eubacterium saburreum DSM 3986]
 gi|315484887|gb|EFU75296.1| D-alanine-D-alanine ligase [Eubacterium saburreum DSM 3986]
          Length = 349

 Score =  278 bits (713), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 88/350 (25%), Positives = 153/350 (43%), Gaps = 54/350 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           + ++ GG SSE E+S+ S    +  ++   +++  + + +    +               
Sbjct: 4   LVIIFGGRSSEHEISVISATNVSKQVDTDKYELILVGITKEGKWLKVDSISSMEDGSWLN 63

Query: 47  ------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
                                     +  D+ F VLHG FGEDG VQ +LEL +IPY   
Sbjct: 64  SKTSAYILPDATKKCIMVETGGEYKEVHVDVVFPVLHGLFGEDGTVQGLLELAKIPYVGC 123

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPL 133
           G+LASA+ MDK+ +K VV   G+       V  + +           +     P  IKP 
Sbjct: 124 GVLASAVGMDKLYTKLVVDKLGIRQAAYEAVLDYEVRENLSDKIEKIEGRFDYPVFIKPS 183

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM---GDASLDVT 190
             GSS G+      + +   +L++    H  ++L+E+ + G E+ CGV+   GD +    
Sbjct: 184 NAGSSRGVSKALDREELKKGILEAL--KHDRKVLVEETIVGHEVECGVLGRPGDVTASGV 241

Query: 191 EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
                 + FY Y+ KY   + T +  +K+P  + +++   A     A+   G+SR DF  
Sbjct: 242 GEIKSAATFYDYDAKYKLDSLTLL-DSKLPDGVREKLPEYAKKIFTALDGFGLSRVDFFA 300

Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
                ++ + EIN  PG T +S++P +   AG   ++L+  ++E A   R
Sbjct: 301 RE-DGEIVFNEINTMPGFTAISMYPMLFEAAGIGKKDLIDRLIELAFERR 349


>gi|161779870|gb|ABX79426.1| VanC2/3 [Enterococcus casseliflavus]
          Length = 350

 Score =  278 bits (712), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 91/342 (26%), Positives = 161/342 (47%), Gaps = 52/342 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDA--GFKVSQIDVDRSV---------------- 42
           +A++ GG S E  VSL+S  +   AL+ +   + +S I +                    
Sbjct: 4   IAIIFGGNSPEYAVSLASATSALEALQSSPYDYDLSLIGIAPDAMDWYLYTGELENIRQD 63

Query: 43  -------------------GLVLAHLK----PDLAFNVLHGNFGEDGLVQAILELLEIPY 79
                              G  L+  +    PD+ F ++HG +GEDG +Q + EL+++PY
Sbjct: 64  TWLLDTKHKQKIQPLFEGNGFWLSEEQQTLVPDVLFPIMHGKYGEDGSIQGLFELMKLPY 123

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIKPL 133
              G+  SAL M+K    Q  ++ GV   P+IL+       + +         P   KP 
Sbjct: 124 VGCGVAGSALCMNKWLLHQAAAAIGVQSAPTILLTNQANQQEQIEAFIQTHGFPVFFKPN 183

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
           + GSS GI  +   + I   L +  ++ +   +L+++ + G+E+ CG++G+ SL V    
Sbjct: 184 EAGSSKGITKVTCVEEIASALKE--AFTYCSAVLLQKNIAGVEIGCGILGNDSLTVGACD 241

Query: 194 VPK--SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
                  F+ +E KY  +++   +PA +P  I  +V+  A L ++++G +G++R DF   
Sbjct: 242 AISLVDGFFDFEEKYQLISAKITVPAPLPETIETKVKEQAQLLYRSLGLKGLARIDFFVT 301

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
               +++  EIN  PG T  S +P M A  G S++ELL  ++
Sbjct: 302 DQ-GELYLNEINTMPGFTSHSRYPAMMAAVGLSYQELLQKLL 342


>gi|18476138|gb|AAK58489.1| D-alanine-D-serine ligase VanC3 [Enterococcus casseliflavus]
          Length = 350

 Score =  278 bits (712), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 91/342 (26%), Positives = 161/342 (47%), Gaps = 52/342 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDA--GFKVSQIDVDRSV---------------- 42
           +A++ GG S E  VSL+S  +   AL+ +   + +S I +                    
Sbjct: 4   IAIIFGGNSPEYTVSLASATSAIEALQSSPYDYDLSLIGIAPDAMDWYLYTGELENIRQD 63

Query: 43  -------------------GLVLAHLK----PDLAFNVLHGNFGEDGLVQAILELLEIPY 79
                              G  L+  +    PD+ F ++HG +GEDG +Q + EL+++PY
Sbjct: 64  TWLLDTKQKQKIQPLFEGNGFWLSEEQQTLVPDVLFPIMHGKYGEDGSIQGMFELMKLPY 123

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIKPL 133
              G+  SAL M+K    Q  ++ GV   P+IL+       + +         P   KP 
Sbjct: 124 VGCGVAGSALCMNKWLLHQAAAAIGVQSAPTILLTNHANQQEQIEAFIQTHGFPVFFKPN 183

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
           + GSS GI  +   + I   L +  ++ +   +L+++ + G+E+ CG++G+ SL V    
Sbjct: 184 EAGSSKGITKVTCVEEIASALKE--AFTYCSAVLLQKNIAGVEIGCGILGNDSLTVGACD 241

Query: 194 VPK--SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
                  F+ +E KY  +++   +PA +P  I  +V+  A L ++++G +G++R DF   
Sbjct: 242 AISLVDGFFDFEEKYQLISAKITVPAPLPETIETKVKEQAQLLYRSLGLKGLARIDFFVT 301

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
               +++  EIN  PG T  S +P M A  G S++ELL  ++
Sbjct: 302 DQ-GELYLNEINTMPGFTSHSRYPAMMAAVGLSYQELLQKLL 342


>gi|297172847|gb|ADI23810.1| D-alanine-D-alanine ligase and related ATP-grasp enzymes
           [uncultured gamma proteobacterium HF4000_47G05]
          Length = 345

 Score =  278 bits (712), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 86/330 (26%), Positives = 150/330 (45%), Gaps = 53/330 (16%)

Query: 15  SLSSGKACASALEDAGFKVSQIDVD----------------------------------- 39
           S+ S ++  +A++   + V    +D                                   
Sbjct: 2   SVVSARSVYAAIDRERYNVVLAGIDLQGRWCFGGKEARLLESATVVSDELVPARLSGVGA 61

Query: 40  ---RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRS 96
                 G  L   + D+ F +LHG +GEDG VQ +LEL  + Y  +G+ ASAL MDK  +
Sbjct: 62  FLVSEDGDNLPDSEFDVVFPLLHGPYGEDGTVQGLLELAGLAYVGAGVAASALGMDKALA 121

Query: 97  KQVVSSCGVPVCPSILVNRFTMDSQHL---------ISPPYVIKPLKGGSSLGIIVIKKD 147
           + + ++ G+P     ++ R       +            P  +KP   GSS+GI  +   
Sbjct: 122 RAIFAASGLPQTQYTVIMRSDWCRAQVPVLERLEGEYDYPLFVKPANLGSSVGISKVHDR 181

Query: 148 QSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIA--VPKSDFYSYEL 204
           Q + + L  +S   +  +L++E+ V+   EL C V+G+     + +   +P ++FY Y  
Sbjct: 182 QGLQVGLELAS--RYDTKLIVERSVENARELECAVLGNEFPQASGVGEIIPGAEFYDYTT 239

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           KY    S  V+PA +     + +Q+LA    +AI C G++R DF        V   EIN 
Sbjct: 240 KYIDDRSELVIPAVLEKSKTETIQQLAIQTFKAIDCSGLARVDFFM-CSDGSVLVNEINT 298

Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            PG TP+S++P++ A AG ++ +L+  +++
Sbjct: 299 MPGFTPISMYPKLWAAAGIAYGDLIDRLIQ 328


>gi|33862595|ref|NP_894155.1| D-alanyl-alanine synthetase A [Prochlorococcus marinus str. MIT
           9313]
 gi|39930843|sp|Q7V8L9|DDL_PROMM RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|33634511|emb|CAE20497.1| D-alanine--D-alanine ligase [Prochlorococcus marinus str. MIT 9313]
          Length = 353

 Score =  278 bits (712), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 92/346 (26%), Positives = 153/346 (44%), Gaps = 52/346 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDA----GFKVSQIDVDRSVGLVLA--------- 47
           + V+ GG S E  VS+ S      AL        F+V  I +D+      A         
Sbjct: 8   VGVVFGGASEEHAVSIRSAITVVGALRSEVNNNRFEVIAIYIDQRGRWWPAGVAEAVLKQ 67

Query: 48  ------------------------HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                     +  + + VLHG  GEDG VQ +  L+  P+  SG
Sbjct: 68  GHPAKPEQLSTPLAPQGFTKLPEGSERVQVWYPVLHGPNGEDGTVQGLFTLMGQPFVGSG 127

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-----------DSQHLISPPYVIKP 132
           +L SALSMDK+  K   ++ G+P  P   V+   +             +  +  P  +KP
Sbjct: 128 VLGSALSMDKLAMKAAFAAAGLPQVPYAAVDAADLLETESRQGVAKHLEAKLKYPCFVKP 187

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--DVT 190
              GSS+GI   +    + + L +++S +   ++++EQ V   EL C V+G   L   V 
Sbjct: 188 ANLGSSVGISKAQNRNELLIGLDKAASLDR--RIVVEQGVSARELECAVLGKRELQTSVV 245

Query: 191 EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
                 +D+Y Y+ KYS   S  ++PA +P  +  +++ LA  A + +   G++R DF +
Sbjct: 246 GEICFDADWYDYDTKYSENCSHTLIPAPLPEGVEAQIRTLALQACRCVAAHGMARVDFFY 305

Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +    +++  EIN  PG T  S++P +   +G +  EL+  +V  A
Sbjct: 306 NAARNEIWLNEINTLPGFTSQSMYPMLWEASGVTLEELVSQLVITA 351


>gi|313901574|ref|ZP_07835016.1| D-alanine--D-alanine ligase [Thermaerobacter subterraneus DSM
           13965]
 gi|313468163|gb|EFR63635.1| D-alanine--D-alanine ligase [Thermaerobacter subterraneus DSM
           13965]
          Length = 426

 Score =  278 bits (712), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 85/256 (33%), Positives = 140/256 (54%), Gaps = 13/256 (5%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+ F VLHG FGEDG VQ +LEL  IPY  +G++ASA+ MDK   K++  + G+PV P +
Sbjct: 155 DVVFPVLHGTFGEDGTVQGLLELAGIPYVGAGVMASAVGMDKAVMKELFRARGLPVVPFL 214

Query: 112 LVNRFTM---------DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
           +V                +  +  P   KP   GSS+GI       ++   L ++ +++ 
Sbjct: 215 VVTAARWRREPAAVLDAIEQSLGYPCFTKPANLGSSVGITRCPDRVALEAGLAEAFAYDR 274

Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVTEIAV--PKSDFYSYELKYSSLNSTHVLPAKIP 220
             ++++E+ VD  EL   V+G+     +      P+  FY+Y  KY+   S  ++PA +P
Sbjct: 275 --KVVVERGVDARELEISVLGNDDPVASVPGEIRPRDAFYTYRAKYTEGGSELIVPAPLP 332

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280
             + +E+QRLA  A QAI   G++R DF  +  + ++   EIN  PG T +S++P++   
Sbjct: 333 PRVVEEMQRLAIAAFQAIDAAGLARVDFFLERATGRLLVNEINTIPGFTVLSMYPKLWEA 392

Query: 281 AGYSFRELLLWMVEDA 296
           AG  +R+L+  ++E A
Sbjct: 393 AGLPYRDLITRLIELA 408



 Score = 66.3 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 26/51 (50%)

Query: 1  MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP 51
          + +L GG S E EVSL S ++   A++   F+   I + R    +L H  P
Sbjct: 44 VGILFGGRSGEHEVSLMSARSVFEAMDRRRFEPVPIGITREGLWILPHDAP 94


>gi|238061902|ref|ZP_04606611.1| D-alanine-D-alanine ligase [Micromonospora sp. ATCC 39149]
 gi|237883713|gb|EEP72541.1| D-alanine-D-alanine ligase [Micromonospora sp. ATCC 39149]
          Length = 322

 Score =  278 bits (712), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 99/312 (31%), Positives = 154/312 (49%), Gaps = 18/312 (5%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62
           VL GG+S ER+VSL SG+    AL   G +    D D ++   L    PD     LHG  
Sbjct: 14  VLAGGLSYERDVSLRSGRRVLDALRAVGVEAELRDADVALLPALVADPPDAVVIALHGAT 73

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ- 121
           GEDG ++ +L+L ++PY      AS ++ DK  +K V+   G+P    + +         
Sbjct: 74  GEDGSLRGVLDLCDVPYVGCDARASRVAWDKPSAKAVLREAGIPTPDWVALPHDRFSELG 133

Query: 122 ---------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                      +  P ++KP +GGS LG  V++   S+P  ++    + +    L+E+YV
Sbjct: 134 AVAVLDRIVDRLGLPLMVKPAQGGSGLGAAVVRDAASLPAAMV--GCFAYDSTALVERYV 191

Query: 173 DGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
            G+++   V+    G  +L   EI VP++  Y Y  +Y++  +T   PA++  ++   V 
Sbjct: 192 PGMDVAVSVVDLGEGAQALPAVEI-VPRNGVYDYAARYTAGRTTWHAPARLDPEVADAVA 250

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           R+A  AH A+G R ISR D + D    +   LE+NV PGMT  S+ P     AG  F  L
Sbjct: 251 RVAVAAHTALGLRDISRVDLIVDA-DGQPHVLEVNVSPGMTETSLLPLAVQAAGLDFGRL 309

Query: 289 LLWMVEDASCLR 300
           L  +V  A+  R
Sbjct: 310 LGSLVSRAAARR 321


>gi|332877310|ref|ZP_08445058.1| D-ala D-ala ligase protein [Capnocytophaga sp. oral taxon 329 str.
           F0087]
 gi|332684693|gb|EGJ57542.1| D-ala D-ala ligase protein [Capnocytophaga sp. oral taxon 329 str.
           F0087]
          Length = 335

 Score =  278 bits (712), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 85/332 (25%), Positives = 157/332 (47%), Gaps = 41/332 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40
           +A++ GG SSE +VSL S +   S L+   ++V  I++                    D 
Sbjct: 5   IAIVAGGDSSEHDVSLRSAEGIHSFLDKERYEVYIIEIKGMTWEAHLKDGSRSNVDRNDF 64

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           S       ++PD A+  +HG  GE+G++Q   +L+ +PY+ S +L  A++ +K    Q +
Sbjct: 65  SFMEGGKRIRPDFAYITIHGTPGENGILQGYFDLIHLPYSTSDVLVEAMTFNKFTLNQYL 124

Query: 101 SSCGVPVCPSILVNRF------TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154
              GV V  S++V +         +    I  P  +KP  GGSS G+  +K    I   +
Sbjct: 125 KGFGVSVSESLIVRKGFEHLITDDEIIEKIGLPCFVKPNAGGSSFGVTKVKSADQIHEAI 184

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS----LDVTEIAVPKSDFYSYELKYSSLN 210
           L+  +    D++++E +++G E++ G          L  TE+ V  ++F+ Y  KY+   
Sbjct: 185 LK--AMRESDEVMVEAFMEGTEISQGCYKTQEKEVVLPATEV-VSDNEFFDYNAKYN-GQ 240

Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK-------VFWLEIN 263
              + PA++  +  + V  +  + +  +GC GI R D++    + +       +  LE+N
Sbjct: 241 VREITPARLKEETAERVSLITSMIYDILGCNGIIRVDYIITHTTDENGKERERINMLEVN 300

Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
             PGMT  S  P+    AG   +++L  ++E+
Sbjct: 301 TTPGMTATSFIPQQVRAAGMDMKDVLTDIIEN 332


>gi|227514491|ref|ZP_03944540.1| D-alanine--D-alanine ligase [Lactobacillus fermentum ATCC 14931]
 gi|227087177|gb|EEI22489.1| D-alanine--D-alanine ligase [Lactobacillus fermentum ATCC 14931]
 gi|299782964|gb|ADJ40962.1| D-alanine--D-alanine ligase [Lactobacillus fermentum CECT 5716]
          Length = 377

 Score =  278 bits (711), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 91/343 (26%), Positives = 161/343 (46%), Gaps = 52/343 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI------------------------ 36
           +A+L GG SSE +VS  S       ++   + VS                          
Sbjct: 8   VALLFGGNSSEHDVSKRSAHNIYDGMDKDKYDVSIFMFTKDGILLDNEASQRIFDGEPED 67

Query: 37  ----------DVDRSVGLVLA---HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                     D+D  +  + A     + D  + V+HGN GEDG VQ +  LL+ PY  SG
Sbjct: 68  QVVQEAYQKMDLDAPLAPIAALSTVKEIDFFYPVIHGNLGEDGTVQGLFRLLKKPYIGSG 127

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVIKPLKGGS 137
           I +SA+S DK  +K++++  G+     +LV     D       +  +     +KP K GS
Sbjct: 128 IASSAMSFDKDLTKRILNQAGIRNTKYLLVTPQNKDQYSWSRIKEELGDLVFVKPAKQGS 187

Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDA---SLDVTEIA 193
           S+GI  +  ++     +  + ++++  ++L+E  +    E+   ++G+    +  +  I 
Sbjct: 188 SVGIHKVDTEEEYETAMKDAFTYDY--KVLVEAGIKNPREIEISILGNENPIASKLGGIR 245

Query: 194 VPKSD-FYSYELKYSSLNS-THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
           VP+ D FY YE K+   +     LP  +  D+ KE+  +A  A++A+G +G++R DFL D
Sbjct: 246 VPEGDEFYDYENKFVDASGVVFDLPVIVDDDLAKEITDMALKAYEALGMKGMARIDFLVD 305

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
                 +  E N  PG T +S++P+M   +G S+ EL+  +++
Sbjct: 306 E-DGVPYLGEPNTLPGFTNISLYPQMWNISGISYSELIDRLIQ 347


>gi|257462519|ref|ZP_05626931.1| D-alanine--D-alanine ligase [Fusobacterium sp. D12]
 gi|317060174|ref|ZP_07924659.1| D-alanine-D-alanine ligase [Fusobacterium sp. D12]
 gi|313685850|gb|EFS22685.1| D-alanine-D-alanine ligase [Fusobacterium sp. D12]
          Length = 288

 Score =  278 bits (711), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 103/299 (34%), Positives = 172/299 (57%), Gaps = 14/299 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59
           +AV MGGISSE+E+S+ SG+A   +L+  G+    + ++ +++       + DLA+  LH
Sbjct: 3   IAVFMGGISSEKEISIRSGEAILESLQRQGYDAYGVVLNEKNMISAFQEEQYDLAYLALH 62

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G  GE+G +Q++LELL   YT S + A A+SM+K+ +K++ S  G+ +  +        +
Sbjct: 63  GGAGENGEIQSVLELLGKKYTGSQVTACAISMNKLLTKKIASFEGIRMAKTY------AN 116

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
              + + P ++KP + GSS+GI V   +  +   L + S +      +IE+Y+ G ELT 
Sbjct: 117 IAEIEAYPVMVKPSEDGSSVGIHVCNTEAEVEKALQEISGYA-----MIEEYIQGEELTV 171

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
           GV+   +L V +I    ++ Y YE KY+   S H  PA+I    Y+E    A   H+A+G
Sbjct: 172 GVLHGKALGVLKIIPKAAEIYDYESKYALGGSVHEFPARIAKTAYEEAMLNAVKIHKALG 231

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
            +G+SRSDF+      +V++LE+N  PGMT  S+ P++A   GY+F ++   +VE+A  
Sbjct: 232 MKGVSRSDFIL--KDDQVYFLEVNACPGMTKTSLIPDLATLQGYTFDDITRMLVEEALA 288


>gi|116333877|ref|YP_795404.1| D-alanine-D-alanine ligase related ATP-grasp enzyme [Lactobacillus
           brevis ATCC 367]
 gi|122269436|sp|Q03QZ9|DDL_LACBA RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|116099224|gb|ABJ64373.1| D-alanine--D-alanine ligase [Lactobacillus brevis ATCC 367]
 gi|238767638|dbj|BAH66654.1| D-alanine:D-alanine ligase [Lactobacillus brevis]
          Length = 380

 Score =  278 bits (711), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 91/345 (26%), Positives = 162/345 (46%), Gaps = 52/345 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS------------------- 41
           + +L GG SSE +VS  S      A++   + VS   + R                    
Sbjct: 9   VGLLFGGNSSEHDVSKRSAHNIYDAMDKDRYNVSLFLLTRDGFVLSDAASRRVFDGEDEA 68

Query: 42  -----------------VGLVLAHLK-PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                L+  K  D+ F ++HGN GEDG +Q +  LL+ P+  SG
Sbjct: 69  TVAAEEQAKVDASNPLAPIWNLSQAKDIDVFFPIIHGNLGEDGTIQGLFRLLKKPFVGSG 128

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFTMD---SQHLISPPYVIKPLKGGS 137
           +LASA+S DK  +KQV+++ G+     +++   NR   D    Q  +     IKP   GS
Sbjct: 129 VLASAVSFDKDMTKQVLTAHGIRNTKYVVLTPDNRADFDYATIQSRLGDNVFIKPANQGS 188

Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVT---EIA 193
           S+GI      Q     +  +  +++  ++L+EQ +DG  E+   ++G+     +    I 
Sbjct: 189 SVGIHKASNVQEYLDGVADAFRYDY--KVLVEQTIDGPQEVEISILGNEQPQASKLGAIR 246

Query: 194 VPKSD-FYSYELKYSSLNS-THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
           VP+SD FY Y  K+   +  T  +P K+  ++ +E+ ++    + A+G +G++R D+L  
Sbjct: 247 VPESDVFYDYNNKFVDASGVTFEVPVKLSDELTQEITQMGLQTYAALGLKGMARIDYLVS 306

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                 +  E+N  PG T +S++P++    G ++ +L+  ++E A
Sbjct: 307 K-DGVPYVGEVNTLPGFTNISLYPQLWQATGINYADLIDRLIELA 350


>gi|184154927|ref|YP_001843267.1| D-alanyl-alanine synthetase A [Lactobacillus fermentum IFO 3956]
 gi|229485961|sp|B2GAV5|DDL_LACF3 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|183226271|dbj|BAG26787.1| D-alanine-D-alanine ligase [Lactobacillus fermentum IFO 3956]
          Length = 377

 Score =  278 bits (711), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 91/343 (26%), Positives = 161/343 (46%), Gaps = 52/343 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI------------------------ 36
           +A+L GG SSE +VS  S       ++   + VS                          
Sbjct: 8   VALLFGGNSSEHDVSKRSAHNIYDGMDKDKYDVSIFMFTKDGILLDNEASQRIFDGEPED 67

Query: 37  ----------DVDRSVGLVLA---HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                     D+D  +  + A     + D  + V+HGN GEDG VQ +  LL+ PY  SG
Sbjct: 68  QVVQEAYQKMDLDAPLAPIAALSTVKEIDFFYPVIHGNLGEDGTVQGLFRLLKKPYIGSG 127

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVIKPLKGGS 137
           I +SA+S DK  +K++++  G+     +LV     D       +  +     +KP K GS
Sbjct: 128 IASSAMSFDKDLTKRILNQAGIRNTKYLLVTPQNKDQYSWSRIKEELGDLVFVKPAKQGS 187

Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDA---SLDVTEIA 193
           S+GI  +  ++     +  + ++++  ++L+E  +    E+   ++G+    +  +  I 
Sbjct: 188 SVGIHKVDTEEEYETAMKDAFTYDY--KVLVEAGIKNPREIEISILGNENPIASKLGGIR 245

Query: 194 VPKSD-FYSYELKYSSLNS-THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
           VP+ D FY YE K+   +     LP  +  D+ KE+  +A  A++A+G +G++R DFL D
Sbjct: 246 VPEGDEFYDYENKFVDASGVVFDLPVIVDDDLAKEITDMALKAYEALGMKGMARIDFLVD 305

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
                 +  E N  PG T +S++P+M   +G S+ EL+  +++
Sbjct: 306 E-DGVPYLGEPNTLPGFTNISLYPQMWNISGISYSELIDRLIQ 347


>gi|330813738|ref|YP_004357977.1| D-alanine--D-alanine ligase [Candidatus Pelagibacter sp. IMCC9063]
 gi|327486833|gb|AEA81238.1| D-alanine--D-alanine ligase [Candidatus Pelagibacter sp. IMCC9063]
          Length = 302

 Score =  278 bits (711), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 113/301 (37%), Positives = 184/301 (61%), Gaps = 5/301 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + +L+GG S ER+VSLS+G+A   AL   G++V ++D  +      +    DLAFN LHG
Sbjct: 6   ILLLVGGPSKERKVSLSTGRAVYLALRKLGYEVVKVDP-KIGSKNFSQHNCDLAFNALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG +Q++LE  +IPYTHSG+ +SA++MDK++SK+      +      ++ + +  +
Sbjct: 65  QFGEDGTIQSLLERQKIPYTHSGVKSSAIAMDKLKSKKKFIKAKIKTPKFKVIKKLSDLN 124

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
             +    +V+KP+  GSS+G+++ K   S+    ++     +G +LL E++++G E+   
Sbjct: 125 NIISKKKFVLKPINEGSSVGVVICKNLSSLNKVKIKMYLKKYG-KLLQEEFIEGKEVQAA 183

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSL-NSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
           +MG  +L   EI  P  +FY Y  KYS    + H++PA +   IY +V ++A  AH+ + 
Sbjct: 184 IMGSKALGAIEIK-PSRNFYDYNAKYSHNAKTKHIMPANLEKKIYNKVLQIALRAHKCLS 242

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
           C+G++RSDF       +++ LE N QPGMTP+S+ PE+A Y+G +F EL+ WMV D S  
Sbjct: 243 CKGVTRSDFRVT-RDNEIYILETNTQPGMTPLSLVPEIAEYSGIAFVELIKWMVLDVSTN 301

Query: 300 R 300
           R
Sbjct: 302 R 302


>gi|126664285|ref|ZP_01735276.1| D-alanylalanine synthetase [Flavobacteria bacterium BAL38]
 gi|126623705|gb|EAZ94402.1| D-alanylalanine synthetase [Flavobacteria bacterium BAL38]
          Length = 324

 Score =  278 bits (711), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 98/324 (30%), Positives = 161/324 (49%), Gaps = 34/324 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40
           +A++MGG SSE ++SL+SG    + +    F   +I +                    D 
Sbjct: 4   VAIIMGGYSSEYKISLTSGNVVFNNINRTKFNPYRIHIFKEKWVYVDENDAEFPIDKNDF 63

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           SV +    +  D+ FN +HG  GEDGL+QA  ELL IP T      +AL+ +K     V+
Sbjct: 64  SVVINGTKVNFDVVFNAIHGTPGEDGLMQAYFELLHIPQTSCDYYQAALTFNKRDMLSVL 123

Query: 101 SSCGVPVCPSILVNRFTMDSQH----LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
              G+    S  +N     +       +  P  +KP K GSS GI  +K        +  
Sbjct: 124 KPYGIKTAESYYLNLGDDINVETILAKVGLPCFVKPNKSGSSFGISKVKTAAEFLPAI-- 181

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNST 212
            +++   D+++IE ++DG E++ GV+        L +TEI V ++DF+ YE KY    S 
Sbjct: 182 ENAYKEDDEIIIESFLDGTEVSVGVIYYKGTITVLPITEI-VSENDFFDYEAKYL-GKSK 239

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
            + PA+I  ++  +++ ++  A++ +  +G SRS+F+   ++ + F LE+N  PG+T  S
Sbjct: 240 EITPARISDELKVKIETVSKRAYEVLKMKGFSRSEFII--VNNEPFMLEMNTIPGLTTES 297

Query: 273 IFPEMAAYAGYSFRELLLWMVEDA 296
           I P+ A  AG S  EL    +E A
Sbjct: 298 ILPQQAREAGISLPELFENAIELA 321


>gi|260663306|ref|ZP_05864197.1| D-alanine-D-alanine ligase [Lactobacillus fermentum 28-3-CHN]
 gi|260552158|gb|EEX25210.1| D-alanine-D-alanine ligase [Lactobacillus fermentum 28-3-CHN]
          Length = 377

 Score =  278 bits (711), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 91/343 (26%), Positives = 161/343 (46%), Gaps = 52/343 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI------------------------ 36
           +A+L GG SSE +VS  S       ++   + VS                          
Sbjct: 8   VALLFGGNSSEHDVSKRSAHNIYDGMDKDKYDVSIFMFTKDGILLDNEASQRIFDGEPED 67

Query: 37  ----------DVDRSVGLVLA---HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                     D+D  +  + A     + D  + V+HGN GEDG VQ +  LL+ PY  SG
Sbjct: 68  QVVKEAYQKMDLDAPLAPIAALSTVKEIDFFYPVIHGNLGEDGTVQGLFRLLKKPYIGSG 127

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVIKPLKGGS 137
           I +SA+S DK  +K++++  G+     +LV     D       +  +     +KP K GS
Sbjct: 128 IASSAMSFDKDLTKRILNQAGIRNTKYLLVTPQNKDQYSWSRIKEELGDLVFVKPAKQGS 187

Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDA---SLDVTEIA 193
           S+GI  +  ++     +  + ++++  ++L+E  +    E+   ++G+    +  +  I 
Sbjct: 188 SVGIHKVDTEEEYETAMKDAFTYDY--KVLVEAGIKNPREIEISILGNENPIASKLGGIR 245

Query: 194 VPKSD-FYSYELKYSSLNS-THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
           VP+ D FY YE K+   +     LP  +  D+ KE+  +A  A++A+G +G++R DFL D
Sbjct: 246 VPEGDEFYDYENKFVDASGVVFDLPVIVDDDLAKEITDMALKAYEALGMKGMARIDFLVD 305

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
                 +  E N  PG T +S++P+M   +G S+ EL+  +++
Sbjct: 306 E-DGVPYLGEPNTLPGFTNISLYPQMWNISGISYSELIDRLIQ 347


>gi|161779883|gb|ABX79434.1| VanC2/3 [Enterococcus casseliflavus]
          Length = 350

 Score =  278 bits (711), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 91/342 (26%), Positives = 161/342 (47%), Gaps = 52/342 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDA--GFKVSQIDVDRSV---------------- 42
           +A++ GG S E  VSL+S  +   AL+ +   + +S I +                    
Sbjct: 4   IAIIFGGNSPEYTVSLASATSAIEALQSSPYDYDLSLIGIAPDAMDWYLYTGELENIRQD 63

Query: 43  -------------------GLVLAHLK----PDLAFNVLHGNFGEDGLVQAILELLEIPY 79
                              G  L+  +    PD+ F ++HG +GEDG +Q + EL+++PY
Sbjct: 64  TWLLDTKHKQKIQPLFEGNGFWLSEEQQTLVPDVLFPIMHGKYGEDGSIQGLFELMKLPY 123

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIKPL 133
              G+  SAL M+K    Q  ++ GV   P+IL+       + +         P   KP 
Sbjct: 124 VGCGVAGSALCMNKWLLHQAAAAIGVQSAPTILLTNQANQQEQIEAFIQTHGFPVFFKPN 183

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
           + GSS GI  +   + I   L +  ++ +   +L+++ + G+E+ CG++G+ SL V    
Sbjct: 184 EAGSSKGITKVTCVEEIASALKE--AFTYCSAVLLQKNIVGVEIGCGILGNDSLTVGACD 241

Query: 194 VPK--SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
                  F+ +E KY  +++   +PA +P  I  +V+  A L ++++G +G++R DF   
Sbjct: 242 AISLVDGFFDFEEKYQLISAKITVPAPLPETIETKVKEQAQLLYRSLGLKGLARIDFFVT 301

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
               +++  EIN  PG T  S +P M A  G S++ELL  ++
Sbjct: 302 DQ-GELYLNEINTMPGFTSHSRYPAMMAAVGLSYQELLQKLL 342


>gi|330995871|ref|ZP_08319767.1| D-ala D-ala ligase protein [Paraprevotella xylaniphila YIT 11841]
 gi|329574402|gb|EGG55973.1| D-ala D-ala ligase protein [Paraprevotella xylaniphila YIT 11841]
          Length = 335

 Score =  277 bits (710), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 85/332 (25%), Positives = 158/332 (47%), Gaps = 41/332 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40
           +A++ GG SSE +VSL S +   S L+   ++V  I++                    D 
Sbjct: 5   IAIVAGGDSSEHDVSLRSAEGIYSFLDKERYEVYIIEIKGMAWEAHLKDGSRSNVDRNDF 64

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           S       ++PD A+  +HG  GE+G++Q   +L+ +PY+ S +L  A++ +K    Q +
Sbjct: 65  SFMEGGKRIRPDFAYITIHGTPGENGILQGYFDLIHLPYSTSDVLVEAMTFNKFTLNQYL 124

Query: 101 SSCGVPVCPSILVNRF------TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154
              GV V  S++V +         +    I  P  +KP  GGSS G+  +K    I   +
Sbjct: 125 KGFGVSVSESLIVRKGFEHLVTDDEIIEKIGLPCFVKPNAGGSSFGVTKVKSADQIHEAI 184

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS----LDVTEIAVPKSDFYSYELKYSSLN 210
           L+  + +  D++++E +++G E++ G          L  TE+ V  ++F+ Y  KY+   
Sbjct: 185 LK--AMHESDEVMVEAFMEGTEISQGCYKTQEKEVVLPATEV-VSDNEFFDYNAKYN-GQ 240

Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK-------VFWLEIN 263
              + PA++  +  + V  +  + +  +GC GI R D++    + +       +  LE+N
Sbjct: 241 VREITPARLKEETAERVSLITSMIYDILGCNGIIRVDYIITHTTDENGKEKERINMLEVN 300

Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
             PGMT  S  P+    AG   +++L  ++E+
Sbjct: 301 TTPGMTATSFIPQQVRAAGMDMKDVLTDIIEN 332


>gi|331701247|ref|YP_004398206.1| D-alanine--D-alanine ligase [Lactobacillus buchneri NRRL B-30929]
 gi|329128590|gb|AEB73143.1| D-alanine--D-alanine ligase [Lactobacillus buchneri NRRL B-30929]
          Length = 376

 Score =  277 bits (710), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 86/345 (24%), Positives = 159/345 (46%), Gaps = 52/345 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI------------------------ 36
           + ++ GG SSE +VS  S      A++   + VS                          
Sbjct: 9   IGLIFGGNSSEHDVSKRSAHNIYDAMDKERYDVSLFLMTKNGYFLDHEASSRVFDGEPED 68

Query: 37  ----------DVDRSVGLVL---AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                     D+   +  ++        D+ F ++HGN GEDG +Q +L LL  PY  + 
Sbjct: 69  EVAKQELAKLDLKNPLARIINLAEESDIDVFFPIIHGNLGEDGTIQGLLRLLHKPYVGTA 128

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVIKPLKGGS 137
           IL SA+S DK  +K++V   GVP     ++   T +          +     IKP   GS
Sbjct: 129 ILGSAMSFDKDITKKIVKLAGVPTTRYEVITPLTAEQYSYDSLSDELGQTLFIKPANQGS 188

Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDA---SLDVTEIA 193
           S+GI  ++  +     +    ++ +  ++LIE+ ++G  EL   ++G+    +  +  I 
Sbjct: 189 SVGIHKVENAEEYSEGI--RDAFRYDSKVLIEEAIEGPEELEISILGNDHPIASKIGAIR 246

Query: 194 VPKSD-FYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
           VPK D FY+Y+ K+   +      P  I  ++ +++  +    ++A+G +G++R D+L  
Sbjct: 247 VPKDDAFYTYDNKFVDASQVKFDVPVDISEELAQQITEMGLTTYRALGLKGMARIDYLVS 306

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
               K +  E+N  PG T +S++P++ A +G S+ EL+  +++ A
Sbjct: 307 K-DDKPYMSEVNTLPGFTNISLYPQLFAASGISYSELIDRLIQLA 350


>gi|161779861|gb|ABX79420.1| VanC2/3 [Enterococcus casseliflavus]
          Length = 350

 Score =  277 bits (710), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 91/342 (26%), Positives = 161/342 (47%), Gaps = 52/342 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDA--GFKVSQIDVDRSV---------------- 42
           +A++ GG S E  VSL+S  +   AL+ +   + +S I +                    
Sbjct: 4   IAIIFGGNSPEYTVSLASATSAIEALQSSPYDYDLSLIGIAPDAMDWYLYTGELENIRQD 63

Query: 43  -------------------GLVLAHLK----PDLAFNVLHGNFGEDGLVQAILELLEIPY 79
                              G  L+  +    PD+ F ++HG +GEDG +Q + EL+++PY
Sbjct: 64  TWLLDTKHTQKIKPLFEGNGFWLSEEQQTLVPDVLFPIMHGKYGEDGSIQGLFELMKLPY 123

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIKPL 133
              G+  SAL M+K    Q  ++ GV   P+IL+       + +         P   KP 
Sbjct: 124 VGCGVAGSALCMNKWLLHQAAAAIGVQSAPTILLTNQANQQEQIEAFIQTHGFPVFFKPN 183

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
           + GSS GI  +   + I   L +  ++ +   +L+++ + G+E+ CG++G+ SL V    
Sbjct: 184 EAGSSKGITKVTCVEEIASALKE--AFTYCSAVLLQKNIAGVEIGCGILGNDSLTVGACD 241

Query: 194 VPK--SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
                  F+ +E KY  +++   +PA +P  I  +V+  A L ++++G +G++R DF   
Sbjct: 242 AISLVDGFFDFEEKYQLISAKITVPAPLPETIETKVKEQAQLLYRSLGLKGLARIDFFVT 301

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
               +++  EIN  PG T  S +P M A  G S++ELL  ++
Sbjct: 302 DQ-GELYLNEINTMPGFTSHSRYPAMMAAVGLSYQELLQKLL 342


>gi|161779876|gb|ABX79430.1| VanC2/3 [Enterococcus casseliflavus]
          Length = 350

 Score =  277 bits (710), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 91/342 (26%), Positives = 161/342 (47%), Gaps = 52/342 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDA--GFKVSQIDVDRSV---------------- 42
           +A++ GG S E  VSL+S  +   AL+ +   + +S I +                    
Sbjct: 4   IAIIFGGNSPEYTVSLASATSAIEALQSSPYDYDLSLIGIAPDAMDWYLYTGELENIRQD 63

Query: 43  -------------------GLVLAHLK----PDLAFNVLHGNFGEDGLVQAILELLEIPY 79
                              G  L+  +    PD+ F ++HG +GEDG +Q + EL+++PY
Sbjct: 64  TWLLDTKHKQKIQPLFEGNGFWLSEEQQTLVPDVLFPIMHGKYGEDGSIQGLFELMKLPY 123

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIKPL 133
              G+  SAL M+K    Q  ++ GV   P+IL+       + +         P   KP 
Sbjct: 124 VGCGVAGSALCMNKWLLHQAAAAIGVQSAPTILLTNQANQQEQIEAFIQTHGFPVFFKPN 183

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
           + GSS GI  +   + I   L +  ++ +   +L+++ + G+E+ CG++G+ SL V    
Sbjct: 184 EAGSSKGITKVTCVEEIASALKE--AFTYCSAVLLQKNIAGVEIGCGILGNDSLTVGACD 241

Query: 194 VPK--SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
                  F+ +E KY  +++   +PA +P  I  +V+  A L ++++G +G++R DF   
Sbjct: 242 AISLVDGFFDFEEKYQLISAKITVPAPLPETIETKVKEQAQLLYRSLGLKGLARIDFFVT 301

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
               +++  EIN  PG T  S +P M A  G S++ELL  ++
Sbjct: 302 DQ-GELYLNEINTMPGFTSHSRYPAMMAAVGLSYQELLQKLL 342


>gi|256845950|ref|ZP_05551408.1| D-alanine-D-alanine ligase [Fusobacterium sp. 3_1_36A2]
 gi|256719509|gb|EEU33064.1| D-alanine-D-alanine ligase [Fusobacterium sp. 3_1_36A2]
          Length = 287

 Score =  277 bits (710), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 103/296 (34%), Positives = 161/296 (54%), Gaps = 15/296 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59
           +AV MGG SSE+E+SL SG+A   +L+  G+    + +D ++          DLA+ VLH
Sbjct: 3   IAVFMGGTSSEKEISLKSGEAVLESLKKQGYDAYGVILDEKNQVTAFLDNDYDLAYLVLH 62

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G  GE+G +QA+L++L   YT SG+LASA++MDK ++KQ+  S G+    +         
Sbjct: 63  GGNGENGKIQAVLDILGKKYTGSGVLASAITMDKDKTKQIAQSVGIKTPKAY------RT 116

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
            + +   P +IKP+  GSS G+ +    +     + +        + +IE Y+ G ELT 
Sbjct: 117 VEEIEKFPVIIKPVDEGSSKGVFLCNNREEAEKAVKKI------VRPIIEDYIVGEELTV 170

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
           GV+   +L V +I       Y Y+ KY+   S H  PAKI    YKE  ++A   H   G
Sbjct: 171 GVLNGEALGVLKIIPQADVLYDYDSKYAKGGSIHEFPAKIENKSYKEAMKIAEKIHSEFG 230

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
            +G SRSDF+      ++++LE+N  PGMT  S+ P++A   GY+F +++   VE 
Sbjct: 231 MKGTSRSDFILSE--GELYFLEVNSSPGMTKTSLIPDLATLKGYTFDDVVRITVET 284


>gi|68536294|ref|YP_250999.1| putative D-alanine-D-alanine ligase [Corynebacterium jeikeium K411]
 gi|123650831|sp|Q4JUX6|DDL_CORJK RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|68263893|emb|CAI37381.1| putative D-alanine-D-alanine ligase [Corynebacterium jeikeium K411]
          Length = 373

 Score =  277 bits (710), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 95/365 (26%), Positives = 156/365 (42%), Gaps = 71/365 (19%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------LAHLKPD 52
           +AVL GG S+E  VS  S  A    L+   ++V  + +  +   V        L     D
Sbjct: 13  VAVLYGGQSTEHSVSCISAGAVIDHLDPEIYEVVPVGITEAGAWVPGTTDTSRLRADGRD 72

Query: 53  L-----------------------------------------AF-------NVLHGNFGE 64
           +                                          F        VLHG  GE
Sbjct: 73  MPRVEDGGVHVQLTFGGAGTAGSAGSGAAGEMRYVTGPQAGEVFAQVDVVFPVLHGVNGE 132

Query: 65  DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFTMDSQ 121
           DG VQ +L+L  + Y  +G+LASA  MDK  +K++    G+PV   +++      T + +
Sbjct: 133 DGTVQGVLDLAGVRYVGNGVLASAAGMDKDFTKRLAREAGIPVGEELILFQPRELTAEEK 192

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
             +  P  +KP +GGSS+GI  +   +    D     ++++ +++++E  + G E+ CGV
Sbjct: 193 ERLGLPVFVKPARGGSSIGISKVDSWEEF--DAAIDLAFSNDNKVIVEAMIHGAEVECGV 250

Query: 182 MGDASLDVTEIAVP--------KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           +  A   +                 FY ++ KY     +  +PA +P +  KE+++LA  
Sbjct: 251 LQHADGSIVSSVPAMLNGTEDGAEGFYGFDAKYVDSTVSATIPAPLPAETIKEIRQLAIR 310

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
              A+GC GI+R DF            EIN  PG TP+S++P+M A  G SF +L+  ++
Sbjct: 311 TFNALGCDGIARVDFF--ATENGPVLNEINTMPGFTPISMYPKMFAAEGVSFGDLVSALI 368

Query: 294 EDASC 298
             A  
Sbjct: 369 ARALA 373


>gi|624700|gb|AAA60990.1| ligase [Enterococcus casseliflavus]
 gi|161779879|gb|ABX79432.1| VanC2/3 [Enterococcus casseliflavus]
 gi|161779885|gb|ABX79435.1| VanC2/3 [Enterococcus casseliflavus]
          Length = 350

 Score =  277 bits (710), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 91/342 (26%), Positives = 161/342 (47%), Gaps = 52/342 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDA--GFKVSQIDVDRSV---------------- 42
           +A++ GG S E  VSL+S  +   AL+ +   + +S I +                    
Sbjct: 4   IAIIFGGNSPEYTVSLASATSAIEALQSSPYDYDLSLIGIAPDAMDWYLYTGELENIRQD 63

Query: 43  -------------------GLVLAHLK----PDLAFNVLHGNFGEDGLVQAILELLEIPY 79
                              G  L+  +    PD+ F ++HG +GEDG +Q + EL+++PY
Sbjct: 64  TWLLDTKHKQKIQPLFEGNGFWLSEEQQTLVPDVLFPIMHGKYGEDGSIQGLFELMKLPY 123

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIKPL 133
              G+  SAL M+K    Q  ++ GV   P+IL+       + +         P   KP 
Sbjct: 124 VGCGVAGSALCMNKWLLHQAAAAIGVQSAPTILLTNQANQQEQIEAFIQTHGFPVFFKPN 183

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
           + GSS GI  +   + I   L +  ++ +   +L+++ + G+E+ CG++G+ SL V    
Sbjct: 184 EAGSSKGITKVTCVEEIASALKE--AFTYCSAVLLQKNIAGVEIGCGILGNDSLTVGACD 241

Query: 194 VPK--SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
                  F+ +E KY  +++   +PA +P  I  +V+  A L ++++G +G++R DF   
Sbjct: 242 AISLVDGFFDFEEKYQLISAKITVPAPLPETIETKVKEQAQLLYRSLGLKGLARIDFFVT 301

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
               +++  EIN  PG T  S +P M A  G S++ELL  ++
Sbjct: 302 ER-GELYLNEINTMPGFTSHSRYPAMMAAVGLSYQELLQKLL 342


>gi|332652706|ref|ZP_08418451.1| D-alanine--D-lactate ligase [Ruminococcaceae bacterium D16]
 gi|332517852|gb|EGJ47455.1| D-alanine--D-lactate ligase [Ruminococcaceae bacterium D16]
          Length = 347

 Score =  277 bits (710), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 93/340 (27%), Positives = 153/340 (45%), Gaps = 49/340 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           + +  GG S+E  VSL S  A  + L+ + F+   + + +S G +               
Sbjct: 6   ILIFFGGCSTEYGVSLQSAHAVLTHLDRSRFEPLLVGITQSGGWLYYTGAPDAIPADRWQ 65

Query: 46  ------------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81
                                      L  D AF VLHG  GEDG +Q +LEL  IP   
Sbjct: 66  GTECVPCTLVLSRGVSHLLLLDGSGTQLSFDAAFPVLHGKNGEDGTLQGLLELAGIPVIG 125

Query: 82  SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT-----MDSQHLISPPYVIKPLKGG 136
            G L+SAL MDK R+ ++ +  GV V  S++  R         +   +  P  +KP++ G
Sbjct: 126 CGALSSALCMDKDRAHKLAALAGVKVPRSVVFRRSAGMDEIKAAAAKLGYPIFVKPVRAG 185

Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK 196
           SS GI  +   + +P     ++++ +  +LL+E+ + G E+ C V+G   L V  +   +
Sbjct: 186 SSFGITRVTGPEGLPG--AAAAAFANDRELLLEEAIPGFEVGCAVLGTDELTVGAVDEIE 243

Query: 197 --SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
               F+ +E KY+   S    PA+I      E+Q +A   ++A+ C+  +R D    P  
Sbjct: 244 LSQGFFDFEEKYTLKTSAIHCPARIHPLKAAEIQAVAKAIYRALDCKDFARVDLFLTP-E 302

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            ++ + E+N  PG T  S +P M   AG  F  L+  ++E
Sbjct: 303 GEIVFNEVNTIPGFTAHSRYPNMMKAAGLDFTTLITRIIE 342


>gi|260063594|ref|YP_003196674.1| D-alanyl-alanine synthetase A [Robiginitalea biformata HTCC2501]
 gi|88783039|gb|EAR14212.1| D-alanylalanine synthetase [Robiginitalea biformata HTCC2501]
          Length = 329

 Score =  277 bits (710), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 100/324 (30%), Positives = 161/324 (49%), Gaps = 34/324 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           +AV+MGG SSE E+SL SG+     L+   +   +I + R   ++L              
Sbjct: 7   IAVIMGGYSSEYEISLKSGEVVCKWLDRDQYDPYRILIRRDKWVMLGDSGREYPVSRHDF 66

Query: 49  --------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
                   L+ D  FN +HG  GE+GL+QA  EL+ +P T  G   +A++ +K     ++
Sbjct: 67  SVELEDGTLRFDCVFNAIHGTPGENGLMQAYFELIGMPQTSCGFYQAAVTFNKRDLLGIL 126

Query: 101 SSCGVPVCPSILVNRFTMDSQHLI----SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
            S GVP   S  ++R    +Q  I      P  +K  + GSS G+ ++++   +   +  
Sbjct: 127 KSAGVPAARSYHLDRGQELNQQAILDAVGLPCFVKANRAGSSFGVSLVREASGLQAAVEN 186

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMG----DASLDVTEIAVPKSDFYSYELKYSSLNST 212
           +      D++LIE  + G E++ GV+        L +TEI V ++DF+ Y+ KY    S 
Sbjct: 187 AL--KEDDEILIEAALQGTEVSVGVIRYQGATRVLPITEI-VSENDFFDYQAKYE-GKSR 242

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
            + PA+IP D  ++V+ LA   +  +   G SRS+F+   +  +   LE+N  PG+T  S
Sbjct: 243 EITPARIPEDTAEKVRELAARIYDRLRMTGYSRSEFIL--VDGEPHLLEVNTTPGLTEAS 300

Query: 273 IFPEMAAYAGYSFRELLLWMVEDA 296
           I P+ AA AG S  EL    + DA
Sbjct: 301 ILPQQAACAGISLTELFGSAIADA 324


>gi|332880023|ref|ZP_08447707.1| D-ala D-ala ligase protein [Capnocytophaga sp. oral taxon 329 str.
           F0087]
 gi|332682019|gb|EGJ54932.1| D-ala D-ala ligase protein [Capnocytophaga sp. oral taxon 329 str.
           F0087]
          Length = 337

 Score =  277 bits (709), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 90/323 (27%), Positives = 156/323 (48%), Gaps = 34/323 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50
           +A++MGG S E  VSL S +  A+ L    +    + +DR   + +              
Sbjct: 16  IAIIMGGYSDEAPVSLKSARVVANHLNKEKYTPYLVRIDRDKWVYVDEQNAEYPINRNDF 75

Query: 51  ----------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
                      +  FN +HG  GEDG +QA   L+ +P T   + ASAL+ +K     V+
Sbjct: 76  SVVINGQKITFEAVFNAIHGTPGEDGYLQAYFNLIGVPLTGCSMYASALTFNKRDMLSVL 135

Query: 101 SSCGVPVCPSILVNR----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
              G+   PS  +N+     T D    +  P  +KP K GSSLG   + ++ ++   + +
Sbjct: 136 KPFGILSAPSYYLNKGENYSTADIVAKVGLPCFVKPNKAGSSLGASKVNEEAALKEAIDK 195

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGD----ASLDVTEIAVPKSDFYSYELKYSSLNST 212
           + +    D++LIE ++ G E++ GV+        L +TEI V ++DF+ Y+ KY+   S 
Sbjct: 196 AFA--VDDEILIESFLKGTEISIGVIKYRGVIKVLPMTEI-VSENDFFDYDAKYN-GKSQ 251

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
            + PA+I  ++  ++  LA   ++ +   G SRS+F+   +    + LE+N  PG++  S
Sbjct: 252 EITPARISEEMTAKINALAERVYRLLKMEGFSRSEFII--VGDTPYLLEMNTTPGLSEAS 309

Query: 273 IFPEMAAYAGYSFRELLLWMVED 295
           + P+ A  AG S  +L    +E 
Sbjct: 310 LLPQQAKVAGISLADLFESEIER 332


>gi|150391440|ref|YP_001321489.1| D-alanine--D-alanine ligase [Alkaliphilus metalliredigens QYMF]
 gi|149951302|gb|ABR49830.1| D-alanine--D-alanine ligase [Alkaliphilus metalliredigens QYMF]
          Length = 358

 Score =  277 bits (709), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 81/342 (23%), Positives = 152/342 (44%), Gaps = 49/342 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-----SVGLVLAHLKP---- 51
           + VL GG S E  VSL S  A  ++L+   + V  I +       ++G+V   +K     
Sbjct: 5   VYVLCGGKSVEHRVSLISASAIINSLDKKKYHVYPIYISDEGIWSNLGIVEDEIKEISEL 64

Query: 52  -------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
                                    ++ F  LHG  GEDG +Q +LE+L+IPY  +G+++
Sbjct: 65  MYQSSNTVISSIETFLRSSFNEREQNIVFPALHGTNGEDGTIQGLLEILDIPYVGNGVMS 124

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGS 137
           SA+ +DK+ +K + +   +P      + +              +  I  P  +KP   GS
Sbjct: 125 SAIGIDKVVTKDLFAKHNIPQGKYTRLLQHQWKKDKLFSIERIEETIGYPAYVKPASLGS 184

Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA--VP 195
           S+GI      + +   + ++ S+   D+L+IE+ + G E+   V+G+     + +   + 
Sbjct: 185 SVGINRCANREELEAAIHEAFSFE--DKLVIEEEIIGREMQISVVGNEFPKASVVGEFIQ 242

Query: 196 KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255
           +  F  Y  KY+      V+PAK+   + + ++ +A  +   + C G+ R D+      R
Sbjct: 243 ERQFMDYAAKYTDGKLIQVIPAKLTEKVSELMREVAIKSFDVLNCSGLVRVDYFVTDDER 302

Query: 256 KVFWLEINVQPGMTPVSIFPEMAAYAG-YSFRELLLWMVEDA 296
             +  E+N  PG T +S+ P +       ++ EL+  ++  A
Sbjct: 303 -FYVNEVNTMPGFTKLSMTPALWEKTDQTTYPELIEKLINLA 343


>gi|317478570|ref|ZP_07937727.1| D-alanine-D-alanine ligase [Bacteroides sp. 4_1_36]
 gi|316905211|gb|EFV27008.1| D-alanine-D-alanine ligase [Bacteroides sp. 4_1_36]
          Length = 326

 Score =  277 bits (709), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 89/323 (27%), Positives = 155/323 (47%), Gaps = 33/323 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40
           +A++ GG +SE  VSL S +   S ++   + +  +++                    D 
Sbjct: 5   IAIVAGGDTSEFHVSLRSAQGIYSFIDKEKYTLYIVEMHGLDWHVQLPDGAKAPVDRNDF 64

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           S  L    +  D A+  +HG  GEDG +Q   ++L IPY+  G+LA++L+ DK    Q +
Sbjct: 65  SFVLDGEKVTFDFAYITIHGTPGEDGRLQGYFDMLHIPYSCCGVLAASLTYDKFACNQYL 124

Query: 101 SSCGVPVCPSILVNRF----TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
              GV +  S+L+         D    I  P  IKP  GGSS G+  +   + I   +  
Sbjct: 125 KGFGVRIAESLLLRGGQSVTDEDVMEKIGLPCFIKPSLGGSSFGVTKVTAKEQIQPAI-- 182

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNST 212
           + ++    ++++E ++DG E+TCG            +TE+ V  ++++ YE KY+   S 
Sbjct: 183 TKAFAEAQEVVVEAFMDGTEITCGCYKTKDKSVVFPITEV-VSHNEYFDYEAKYN-GESD 240

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
            + PA+I  D+ + VQ L    +  +G  GI R D++      K+  LE+N  PGMT  S
Sbjct: 241 EITPARISDDLTRRVQTLTSAIYDILGAYGIIRVDYIITE-GEKINLLEVNTTPGMTATS 299

Query: 273 IFPEMAAYAGYSFRELLLWMVED 295
             P+    AG   ++++  ++E+
Sbjct: 300 FIPQQVRAAGMEMKDVMTDIIEN 322


>gi|33519925|ref|NP_878757.1| D-alanyl-alanine synthetase A [Candidatus Blochmannia floridanus]
 gi|39930853|sp|Q7VRX1|DDL_BLOFL RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|33504271|emb|CAD83163.1| D-alanine:D-alanine ligase A [Candidatus Blochmannia floridanus]
          Length = 354

 Score =  277 bits (709), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 85/343 (24%), Positives = 148/343 (43%), Gaps = 50/343 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           + ++ GG S E EVSL S       +    F+V  + + +     +              
Sbjct: 7   VGLVCGGCSLEHEVSLKSAIYIMKYINKRFFEVVVLWISKQGDWYIVENDDMHIDFFVNK 66

Query: 49  -------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                    L  D+ F ++HG  GEDG +Q +L L+ +PY  S 
Sbjct: 67  ENLHKCMPILMFSSGNRCFEYINNILSLDVIFPIIHGALGEDGSLQGLLRLMNLPYVGSD 126

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLISPPYVIKPLKGGS 137
           +L SA+ MDK  +K+++   G+ + P              ++   +   P+ +KP+  GS
Sbjct: 127 VLGSAICMDKDITKRLLRDSGLSITPFRTFLAHEKKKLKFLNFADMFGLPFFVKPVNQGS 186

Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT----EIA 193
           S+G+  +  D S    L  +  ++H  +++IE  + G EL C V+G+    +T    EI 
Sbjct: 187 SIGVAKVNDDYSFHSALDIAFFYSH--KIIIESCIAGRELECAVLGNNENPITSVCGEII 244

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
               DFY+Y  KY   NS  V+PA +   +  +++ +A    Q + C G++R D      
Sbjct: 245 KKNDDFYTYCDKYVDHNSEIVIPAVLEKSVSSKIRSIAIRVFQILNCFGMARVDIFLFGK 304

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            R +   E+N  PG T  S++ ++    G +   LL  ++  A
Sbjct: 305 DR-IIINEVNTLPGFTSDSMYLKLWQATGINISTLLTRLIMLA 346


>gi|225010883|ref|ZP_03701350.1| D-alanine/D-alanine ligase [Flavobacteria bacterium MS024-3C]
 gi|225004930|gb|EEG42885.1| D-alanine/D-alanine ligase [Flavobacteria bacterium MS024-3C]
          Length = 323

 Score =  277 bits (709), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 95/318 (29%), Positives = 153/318 (48%), Gaps = 34/318 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS------------------V 42
           +AV+MGG +SE E+SL SG   A+ L+   ++V  I + ++                   
Sbjct: 5   IAVIMGGYTSEFEISLKSGAVVAAHLDPDKYEVYPIVITKNRWTYTTDHGAVYAIQKENF 64

Query: 43  GLVLAHLK--PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
            L L H K   D  FN +HG+ GEDG +QA LELL IP T      +AL+ +K     V+
Sbjct: 65  SLELPHKKVLFDGVFNAIHGSPGEDGKIQAYLELLGIPQTACDFYQAALTYNKRDLLSVL 124

Query: 101 SSCGVPVCPSILVNRFTMDSQHLI----SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
              G+ +  S  +N     ++  I      P  +K  + GSS GI  +     I   L  
Sbjct: 125 KPYGIAMAKSYYLNFGDPINKEAIIKKVGLPCFVKANRSGSSYGISKVYTSDQIEAALEI 184

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNST 212
             ++    +++IE  + G E++ GV+        L +TEI + ++DF+ Y+ KY    ST
Sbjct: 185 --AFKEDKEVIIESALVGREVSVGVIQYQGKTKVLPITEI-LSENDFFDYQAKYE-GKST 240

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
            + PA +  ++  ++  +A   +  +  +G +RS+F+   ++     LE+N  PGMT  S
Sbjct: 241 EITPADLEPELEDKIIAVATFIYNTLNLKGFTRSEFIL--VNNVPHLLEVNTTPGMTQHS 298

Query: 273 IFPEMAAYAGYSFRELLL 290
           I P+ A  AG S  EL  
Sbjct: 299 ILPQQAKEAGISLPELFE 316


>gi|297172447|gb|ADI23420.1| D-alanine-D-alanine ligase and related ATP-grasp enzymes
           [uncultured gamma proteobacterium HF0770_33G18]
          Length = 298

 Score =  277 bits (709), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 83/270 (30%), Positives = 145/270 (53%), Gaps = 15/270 (5%)

Query: 42  VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
            G  +   + D+ F +LHG +GEDG VQ +LEL  +PY  +G+ ASA+ MDK  ++ + S
Sbjct: 21  DGTDVESGRFDVVFPLLHGPYGEDGTVQGLLELAGVPYVGAGVAASAVGMDKELARAIFS 80

Query: 102 SCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152
           + G+P    +++ R            + +     P  IKP+  GSS+GI        +  
Sbjct: 81  AAGLPQTRFVVIRRTRWSENPNLGVQEVERDFDYPLFIKPVNLGSSVGITKAHDRDELIQ 140

Query: 153 DLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIA--VPKSDFYSYELKYSSL 209
            +   S+  +  ++LIE  V+   E+ C V+G+  L+V+ +   VP ++FY Y  KY   
Sbjct: 141 GV--DSAGVYATKILIEVSVEQAREIECAVLGEEDLEVSGVGEIVPGAEFYDYRTKYIDD 198

Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
            +T ++PA +P    K++Q ++    +AI C G++R DFL      ++   EIN  PG T
Sbjct: 199 CATLIIPADLPGATVKQIQEMSIRTFRAIDCSGLARVDFLI-GQDGEILLNEINTMPGFT 257

Query: 270 PVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
           P+S++P++ A AG ++ +L+  +++ A   
Sbjct: 258 PISMYPKLWAAAGLNYPDLIDRLIQIALAR 287


>gi|163843534|ref|YP_001627938.1| D-alanine--D-alanine ligase [Brucella suis ATCC 23445]
 gi|163674257|gb|ABY38368.1| D-alanine--D-alanine ligase [Brucella suis ATCC 23445]
          Length = 353

 Score =  277 bits (709), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 93/347 (26%), Positives = 164/347 (47%), Gaps = 51/347 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           + VL GG S+  +VS+ S     +AL+ A ++   + V R+   +L              
Sbjct: 8   IVVLFGGRSAGHDVSVLSATNVMNALDPAKYEAVPVFVTRAGQWLLSRFVNGALEKPSSG 67

Query: 47  -----------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                     K D+ F VLHG  GEDG VQ + ++  +P    G
Sbjct: 68  AELCLVPGGCGRAIVVPDAGAPYEADKIDIIFPVLHGLHGEDGAVQGLAQVARVPLAGCG 127

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSL 139
           I  SA ++DK  +K++V+  G+    S+ + R  + +    +  +  P  IKP + GSS+
Sbjct: 128 IPGSANALDKDIAKRLVNEAGLSTAKSVTITREEVPAFSALEQALGLPIFIKPARQGSSV 187

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD--ASLDVT---EIAV 194
           G+  +  +      +  S  + + D+LL E+++   E+ CGV+ D   +L V+   EI  
Sbjct: 188 GVHKVVTEADYQAAM--SDGFTYDDKLLAEEFIQAREVECGVLEDEGGALFVSRAGEIVP 245

Query: 195 PKSD-FYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            +S  FYSY+ KY   + T +  PA++P  +  E++ +A  A + +GC  ++R DF    
Sbjct: 246 AESHCFYSYDAKYIDADGTEIKVPAELPEQVENEIRAIAARAFRVLGCDSMARVDFFVTA 305

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
             R++   EIN  PG T +S++ ++ A +G S+ E++  +V      
Sbjct: 306 -DRRIVLNEINTIPGFTDMSMYSKVMAVSGVSYPEIINRLVAHGLAR 351


>gi|161779846|gb|ABX79408.1| VanC4 [Enterococcus casseliflavus]
          Length = 350

 Score =  277 bits (709), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 92/342 (26%), Positives = 160/342 (46%), Gaps = 52/342 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDA--GFKVSQIDVDRSVGL------VLAHLK-- 50
           +A++ GG S E  VSL+S  +   AL+ +   + +S I +             L +++  
Sbjct: 4   IAIIFGGNSPEYTVSLASATSAIEALQSSPYDYDLSLIGIAPDAMDWYLYTGELENIRQD 63

Query: 51  -------------------------------PDLAFNVLHGNFGEDGLVQAILELLEIPY 79
                                          PD+ F ++HG +GEDG +Q + EL+++PY
Sbjct: 64  TWLLDTKHTQKIQPLFEGNGFWISEAQQTLVPDVLFPIMHGKYGEDGSIQGMFELMKLPY 123

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVN------RFTMDSQHLISPPYVIKPL 133
              G+ ASAL M+K    Q  ++ GV   P+IL+       R           P   KP 
Sbjct: 124 VGCGVAASALCMNKWLLHQAAAAIGVQSAPTILLTNQANQQRQIEAFIQTHGFPVFFKPN 183

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
           + GSS GI  +   + I   L ++ +  +   +L+++ + G+E+ CG++G+ SL V    
Sbjct: 184 EAGSSKGITKVTCVEEIAPALKEAFA--YCSAVLLQKNIAGVEIGCGILGNDSLTVGACD 241

Query: 194 VPK--SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
                  F+ +E KY  +++   +PA +P  I  +V+  A L + ++G +G++R DF   
Sbjct: 242 AISLVDGFFDFEEKYQLISAKITVPAPLPETIETKVKEQAQLLYHSLGLKGLARIDFFVT 301

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
               +++  EIN  PG T  S +P M A  G S++ELL  ++
Sbjct: 302 DQ-GELYLNEINTMPGFTSHSRYPAMMAAVGLSYQELLQKLL 342


>gi|323483119|ref|ZP_08088511.1| hypothetical protein HMPREF9474_00260 [Clostridium symbiosum
           WAL-14163]
 gi|323403539|gb|EGA95845.1| hypothetical protein HMPREF9474_00260 [Clostridium symbiosum
           WAL-14163]
          Length = 355

 Score =  277 bits (708), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 91/346 (26%), Positives = 150/346 (43%), Gaps = 56/346 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           + V+ GG SSE  VS  S     + ++   + V  + +      +L              
Sbjct: 6   ILVIFGGQSSEHIVSCMSAVNVINNIDRDTYDVLIVGITEEGHWLLVDSVEAIQDESWRD 65

Query: 47  ------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
                                     +K D AF VLHG +GEDG +Q + EL ++PY   
Sbjct: 66  GTVQAVLSPDATEKSVIVIDGTGIEKIKVDGAFPVLHGLYGEDGTIQGLFELAKLPYVGC 125

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD-----------SQHLISPPYVIK 131
           G+LASA+SMDK  +K +    GV       V +  +             +   + P  IK
Sbjct: 126 GVLASAVSMDKFFTKIIADRVGVRQAAYEPVMKEEIAGTEGMAEAVKRVEARFAYPVFIK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS G+   +  + +   L +++   H  ++L+E+ + G E+ C V G+    V  
Sbjct: 186 PSNAGSSRGVSKAENREQLTEGLTEAA--RHDRKILVEETIVGHEIECAVFGNGKEPVIA 243

Query: 192 IAVPK----SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
             V +    ++FY +E KY +  S  V+  ++P D  + V+R A    +A+   G++R D
Sbjct: 244 SGVGEVLAAAEFYDFEAKYFNAESRTVVNPELPGDSAERVRRAAVEIFKAVDGYGLARVD 303

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           F        V + EIN  PG T +S++P +   AG S  EL+  ++
Sbjct: 304 FFVTK-DGDVVFNEINTMPGFTAISMYPMLFEAAGISKTELVGKLI 348


>gi|313207065|ref|YP_004046242.1| D-alanine--D-alanine ligase [Riemerella anatipestifer DSM 15868]
 gi|312446381|gb|ADQ82736.1| D-alanine--D-alanine ligase [Riemerella anatipestifer DSM 15868]
          Length = 327

 Score =  277 bits (708), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 93/328 (28%), Positives = 162/328 (49%), Gaps = 35/328 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           +AV+MGG S E +VSL SG+    +L+   + V ++ V +     L              
Sbjct: 6   IAVVMGGYSDEYKVSLKSGQLIYDSLDRDLYNVYKVVVLKEGWFYLDENEAKLPIQKGDF 65

Query: 49  ---------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
                    L+ D+ FN +HG  GE+G++QA  + +   YT      SAL+ +K  +  V
Sbjct: 66  SVNLPSGEVLRFDVCFNTIHGTPGENGVLQAYWDAIGQKYTGCDFYQSALTFNKKDTLAV 125

Query: 100 VSSCGVPVCPSILVNRFTMDSQHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
           ++  G+P   S  + +     +      +  P  +KP + GSSLGI  +K+       L 
Sbjct: 126 LAKYGIPSAKSFYIKKGEAYDKDKIINELKLPLFVKPNQSGSSLGISKVKEVSEFEAAL- 184

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNS 211
              ++   D++L+E ++DG+E++ GV+        L +TEI +P+++F+ YE KY    S
Sbjct: 185 -EKAFLEDDEVLVESFLDGMEVSVGVLDYKGETIVLGITEI-IPETEFFDYEAKY-QGAS 241

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271
             + PA++       V+ +A  A+ ++G +G SRS+++   ++   + LE+N  PG +P 
Sbjct: 242 QEITPARLDEATRLRVEEVAKRAYNSLGMKGFSRSEYII--MNGVPYMLEMNTNPGFSPA 299

Query: 272 SIFPEMAAYAGYSFRELLLWMVEDASCL 299
           SI P+ A   G S ++L    VE A   
Sbjct: 300 SILPQQARIYGISIKDLCGNEVEKALAK 327


>gi|86742290|ref|YP_482690.1| D-alanyl-alanine synthetase A [Frankia sp. CcI3]
 gi|123764520|sp|Q2J6Y1|DDL_FRASC RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|86569152|gb|ABD12961.1| D-alanine--D-alanine ligase [Frankia sp. CcI3]
          Length = 383

 Score =  276 bits (707), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 80/256 (31%), Positives = 131/256 (51%), Gaps = 13/256 (5%)

Query: 51  PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            D+ F +LHG FGEDG VQ +LE+  +PY  SG+ ASA +MDK   K ++ + G+PV   
Sbjct: 123 IDVVFPLLHGPFGEDGTVQGLLEMAGLPYVGSGVFASAAAMDKQHMKALLRAAGLPVGSY 182

Query: 111 ILVNRFTM---DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL 167
            ++          Q  +  P  +KP +GGSS+GI  ++    +   +  + +     ++L
Sbjct: 183 AVLRAGDTLTGADQERLGLPVFVKPARGGSSIGISRVEAWADLDTAIKAARA--SDPKVL 240

Query: 168 IEQYVDGIELTCGVMG-------DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
           +E  + G E+ CGV+G       +AS+         + FY +E KY S  +   +PA + 
Sbjct: 241 VESAIVGREIECGVLGILDGPGAEASVPAEITVTSSAGFYDFEAKYMSDATHFDVPANLS 300

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280
             + +EV+  A  A +A+ C G++R D         V   E+N  PG TP S+FP M   
Sbjct: 301 HAVREEVRGAAIAAFEALDCAGLARVDMFVTA-DDHVIINEVNTMPGFTPTSMFPRMWEA 359

Query: 281 AGYSFRELLLWMVEDA 296
           +G ++ +L+  +V  A
Sbjct: 360 SGVTYPQLVDRLVRLA 375


>gi|317970573|ref|ZP_07971963.1| D-alanine--D-alanine ligase [Synechococcus sp. CB0205]
          Length = 364

 Score =  276 bits (707), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 93/344 (27%), Positives = 156/344 (45%), Gaps = 50/344 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALED----AGFKVSQIDVDR--------SVGLVLAH 48
           + ++ GG++ E  VS+ S    A+AL        +++    +D+            VLA 
Sbjct: 8   LGLVFGGVTGEHAVSIRSANTVAAALRSGANAQRYRLDCFYIDQWGHWWPPAVADAVLAK 67

Query: 49  LKP-------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
             P                         +L   VLHG  GEDG +Q +  L+++P+  SG
Sbjct: 68  GTPAERSELPAAPLRPGFQGFPEGALDVELWVPVLHGPNGEDGTIQGLFSLMQVPFVGSG 127

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---------ISPPYVIKPLK 134
           +L SA+ MDK   K   ++ G+P  P   V+   ++ Q           +  P  IKP  
Sbjct: 128 VLGSAVGMDKQAMKAAFAAAGLPQVPYACVDVQELEQQPEVLVQQLETQLGYPCFIKPAN 187

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--DVTEI 192
            GSS+GI        +   L  ++   H  ++++EQ +   EL C V+G   +   V   
Sbjct: 188 LGSSVGISKASNRAELMQGLALAA--QHDPRMVVEQGIQARELECAVLGGQQMRSSVLGE 245

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
               +D+Y Y+ KYS   S  V+PA++P  + +  + +A  A +A+G  G++R DF ++ 
Sbjct: 246 ICFDADWYDYDTKYSDGKSHTVIPAEVPEALSERARTMAIAACRAVGASGLARVDFFYEQ 305

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            S  ++  EIN  PG T  S++P + A  G    EL+  +V+ A
Sbjct: 306 ASGALWLNEINTLPGFTSQSMYPMLWAKTGLPLEELVHELVQLA 349


>gi|325335498|gb|ADZ11772.1| D-alanine-D-alanine ligase related ATP-grasp enzyme [Riemerella
           anatipestifer RA-GD]
          Length = 327

 Score =  276 bits (707), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 93/328 (28%), Positives = 161/328 (49%), Gaps = 35/328 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           +AV+MGG S E +VSL SG+    +L+   + V ++ V +     L              
Sbjct: 6   IAVVMGGYSDEYKVSLKSGQLIYDSLDRDLYNVYKVVVLKEGWFYLDENEAKLPIQKGDF 65

Query: 49  ---------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
                    L+ D+ FN++HG  GE+G++QA  + +   YT      SAL+ +K  +  V
Sbjct: 66  SVNLPSGEVLRFDVCFNIIHGTPGENGVLQAYWDAIGQKYTGCDFYQSALTFNKKDTLAV 125

Query: 100 VSSCGVPVCPSILVNRFTMDSQHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
           ++  G+P   S  + +     +      +  P  +KP + GSSLGI  +K+       L 
Sbjct: 126 LAKYGIPSAKSFYIKKGEAYDKDKIINELKLPLFVKPNQSGSSLGISKVKEVSEFEAAL- 184

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNS 211
              ++   D++L+E ++DG+E++ GV+        L +TEI +P+++F+ YE KY    S
Sbjct: 185 -EKAFLEDDEVLVESFLDGMEVSVGVLDYKGETIVLGITEI-IPETEFFDYEAKY-QGAS 241

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271
             ++PA++       V+ +A  A+  +G +G SRS+++   +    + LE+N  PG +P 
Sbjct: 242 QEIIPARLDEATRLRVEEVAKRAYNYLGMKGFSRSEYII--MDGVPYMLEMNTNPGFSPA 299

Query: 272 SIFPEMAAYAGYSFRELLLWMVEDASCL 299
           SI P+ A   G S  +L    VE A   
Sbjct: 300 SILPQQARIYGISITDLCGNEVEKALAK 327


>gi|313139503|ref|ZP_07801696.1| D-alanine-D-alanine ligase [Bifidobacterium bifidum NCIMB 41171]
 gi|313132013|gb|EFR49630.1| D-alanine-D-alanine ligase [Bifidobacterium bifidum NCIMB 41171]
          Length = 394

 Score =  276 bits (707), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 88/370 (23%), Positives = 156/370 (42%), Gaps = 77/370 (20%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           + V+ GG + E  +S  S      AL+   F+   + + +    ++    P         
Sbjct: 22  VVVMYGGKADEHSISCISTAGVLRALDTDRFEPVPVGITKQGQWIVDGEDPRGWDMADGL 81

Query: 52  --------------------------------------DLAFNVLHGNFGEDGLVQAILE 73
                                                 D    VLHG +GEDG +Q +LE
Sbjct: 82  PVVEKTPGSRDVVLDVVLGQDGFFARNDDGTLSSLGHVDAVLPVLHGPYGEDGTIQGLLE 141

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------------- 120
           ++++PY   G+LASA  MDK  +K ++++ G+PV P I V+    D+             
Sbjct: 142 MMDVPYVGCGVLASAACMDKHYTKVLLAAAGIPVAPGITVDARGFDAASRFAADADGLLA 201

Query: 121 ---QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS-SWNHGDQLLIEQYVDGIE 176
              +  ++ P  +KP + GSS G+  ++              + +H  ++LIEQ +D  E
Sbjct: 202 RVEEAGLAYPLFVKPSRAGSSFGVTKVEHAGDAAELAAAVFEASHHDWRILIEQGIDARE 261

Query: 177 LTCGVMGDASLDVTEIAVP-----------KSDFYSYELKYSSLNSTHVL-PAKIPLDIY 224
           + C V+   +    + + P              FY ++ KY   +++HV  PA +P +  
Sbjct: 262 IECAVLCPKAGSEPQASWPGEIVLDKRNSGDDQFYDFDSKYMDSSASHVEVPANLPQETL 321

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
           ++V+  A  A +A+   G+SR D    P   +V   EIN  PG TP+S++P+     G  
Sbjct: 322 QQVRETAVKAFKAVDGAGLSRVDTFVTP-DGEVMVNEINTMPGFTPISMYPKAWEATGIG 380

Query: 285 FRELLLWMVE 294
           + EL+  +++
Sbjct: 381 YTELITKLID 390


>gi|254967061|gb|ACT97568.1| putative D-alanine-D-alanine ligase [uncultured organism]
          Length = 332

 Score =  276 bits (706), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 85/327 (25%), Positives = 150/327 (45%), Gaps = 36/327 (11%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-----------------VDRSVG 43
           +A++ GG SSE +VSL S +   S  +   + V  +D                 +DR+  
Sbjct: 8   IAIVCGGDSSEHDVSLRSAQGLYSFFDKERYDVYIVDVRGTDWRVQLPDGEEAKIDRNDF 67

Query: 44  LVLAHLK----PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
             +         D A+  +HG  GE+G +Q   +L+ +PY+ SG+L  A++ DK    + 
Sbjct: 68  SFVKTDGTAVVFDYAYITIHGQPGENGPMQGYFDLIHVPYSTSGVLVEAMTFDKFVLNRY 127

Query: 100 VSSCGVPVCPSILVNRF----TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
           + S G+ V  S+L+ R       +    I  P  +KP   GSS G+  +K    +   L 
Sbjct: 128 LGSFGIHVADSVLLRRGETYNEEEIAKRIGMPCFVKPANDGSSFGVSKVKNADQLEPAL- 186

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDAS----LDVTEIAVPKSDFYSYELKYSSLNS 211
              ++     +++E Y+DG E+T G+           +TE+ V  ++F+ Y+ KY+    
Sbjct: 187 -RVAFMESSDVMVEAYLDGTEITQGIYKTRERSVPFPITEV-VTTNEFFDYDAKYN-GQV 243

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF--DPLSRKVF-WLEINVQPGM 268
             + PA+I  +  + V  +    +  +   GI R D++   D    +V   LE+N  PGM
Sbjct: 244 DEITPARISPETAERVTEITSRIYDILHANGIIRIDYIITHDAEGNEVINMLEVNTTPGM 303

Query: 269 TPVSIFPEMAAYAGYSFRELLLWMVED 295
           T  S  P+    AG   +++L  ++E+
Sbjct: 304 TTTSFIPQQVRAAGLDIKDVLTEIIEN 330


>gi|254967066|gb|ACT97571.1| putative D-alanine-D-alanine ligase [uncultured organism]
          Length = 332

 Score =  276 bits (706), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 85/327 (25%), Positives = 150/327 (45%), Gaps = 36/327 (11%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-----------------VDRSVG 43
           +A++ GG SSE +VSL S +   S  +   + V  +D                 +DR+  
Sbjct: 8   IAIVCGGDSSEHDVSLRSAQGLYSFFDKERYDVYIVDVRGTDWRVQLPDGEEAKIDRNDF 67

Query: 44  LVLAHLK----PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
             +         D A+  +HG  GE+G +Q   +L+ +PY+ SG+L  A++ DK    + 
Sbjct: 68  SFVKTDGTAVVFDYAYITIHGQPGENGPMQGYFDLIHVPYSTSGVLVEAMTFDKFVLNRY 127

Query: 100 VSSCGVPVCPSILVNRF----TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
           + S G+ V  S+L+ R       +    I  P  +KP   GSS G+  +K    +   L 
Sbjct: 128 LGSFGIHVADSVLLRRGETYNEEEIAKRIGMPCFVKPANDGSSFGVSKVKNADQLEPAL- 186

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDAS----LDVTEIAVPKSDFYSYELKYSSLNS 211
              ++     +++E Y+DG E+T G+           +TE+ V  ++F+ Y+ KY+    
Sbjct: 187 -RVAFMESSDVMVEAYLDGTEITQGIYKTRERSVPFPITEV-VTTNEFFDYDAKYN-GQV 243

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF--DPLSRKVF-WLEINVQPGM 268
             + PA+I  +  + V  +    +  +   GI R D++   D    +V   LE+N  PGM
Sbjct: 244 DEITPARISPETAERVTEITSRIYDILHANGIIRIDYIITHDAEGNEVINMLEVNTTPGM 303

Query: 269 TPVSIFPEMAAYAGYSFRELLLWMVED 295
           T  S  P+    AG   +++L  ++E+
Sbjct: 304 TTTSFIPQQVRAAGLDIKDVLTEIIEN 330


>gi|148240092|ref|YP_001225479.1| D-alanine--D-alanine ligase [Synechococcus sp. WH 7803]
 gi|190359213|sp|A5GML7|DDL_SYNPW RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|147848631|emb|CAK24182.1| D-alanine--D-alanine ligase [Synechococcus sp. WH 7803]
          Length = 353

 Score =  276 bits (706), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 93/346 (26%), Positives = 151/346 (43%), Gaps = 52/346 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASAL----EDAGFKVSQIDVDRSVGL--------VLAH 48
           + V+ GG S E  VS+ S +    A         F V    +DR             L  
Sbjct: 8   VGVVFGGASGEHAVSIRSARTVIEAFSAPENQERFAVIPHYIDREGRWWGPAVAERALEQ 67

Query: 49  LK-------------------------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
            K                          DL + VLHG  GEDG VQ +  L+  P+  SG
Sbjct: 68  NKALDAHELPQPLPAPGLRHWPVDPDSVDLWYPVLHGPNGEDGTVQGLFTLMNKPFVGSG 127

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-----------QHLISPPYVIKP 132
           +L SA+ MDK+  K   ++ G+   P + +    ++            +  +  P  +KP
Sbjct: 128 VLGSAVGMDKLAMKAAFAAAGLSQVPYMGLTAADLEDPERLEQLLTRVEQELGYPCFVKP 187

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192
              GSS+GI        +   L Q+++     +LL+EQ V+  EL C V+G   L  + +
Sbjct: 188 ANLGSSVGITKANNRDELLAGLHQAAAL--DPRLLVEQGVNARELECAVLGRRHLRASVV 245

Query: 193 AVP--KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
                 +D+Y YE KY+   S  ++PA +P  + +++Q +A  A  A+   G +R D  +
Sbjct: 246 GEIRFDADWYDYETKYTEGRSHTLIPAPLPALVSQQIQAMAIRACHAVHAFGQARVDVFY 305

Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           D  S +++  EIN  PG T  S++P + A +G    +L+  +V+ A
Sbjct: 306 DETSGEIWLNEINTLPGFTSQSMYPTLWAASGIPLPQLVAELVDTA 351


>gi|303236159|ref|ZP_07322760.1| D-ala D-ala ligase N-terminal domain protein [Prevotella disiens
           FB035-09AN]
 gi|302483665|gb|EFL46659.1| D-ala D-ala ligase N-terminal domain protein [Prevotella disiens
           FB035-09AN]
          Length = 331

 Score =  276 bits (706), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 88/325 (27%), Positives = 149/325 (45%), Gaps = 33/325 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40
           +A++ GG SSE +VSL S +   S  +   + +  +DV                    D 
Sbjct: 8   IAIICGGDSSEHDVSLRSAQGLYSFFDKELYNIYIVDVKGTDWHVNLDNGRIAAINKNDF 67

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           S       +  D A+  +HG  GE+G++Q  LEL+ +PY+   +L SAL+ DK    + +
Sbjct: 68  SFNNEGETVFFDYAYITIHGRPGENGIMQGYLELINMPYSTCDVLTSALTFDKFVLNRYL 127

Query: 101 SSCGVPVCPSILVN----RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
            S G+ V  SIL+         + +  +  P  IKP   GSS G+  +K    I   L +
Sbjct: 128 KSYGIRVPESILLRLEDSYDEKEIEQKMGMPCFIKPATDGSSFGVSKVKNADQIAPALRK 187

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV---TEIAVPKSDFYSYELKYSSLNSTH 213
             ++    ++++E ++DGIE+T G+       V       V  ++F+ Y  KY+      
Sbjct: 188 --AFMESSEVMVEGFLDGIEITQGIYKTKEKSVPFPITEVVTSNEFFDYNAKYN-GEVDE 244

Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF--DPLSRKVF-WLEINVQPGMTP 270
           + PA+I  ++  +V  +    +  +   GI R D++   D     V   LE+N  PGMT 
Sbjct: 245 ITPARISKELADKVSEMTSRIYDILHANGIIRIDYIITKDEAGNDVINMLEVNTTPGMTA 304

Query: 271 VSIFPEMAAYAGYSFRELLLWMVED 295
            S  P+    AG   +++L  +VE+
Sbjct: 305 TSFIPQQVRAAGLDIKDVLSEIVEN 329


>gi|270295586|ref|ZP_06201787.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270274833|gb|EFA20694.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 326

 Score =  276 bits (706), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 90/323 (27%), Positives = 155/323 (47%), Gaps = 33/323 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40
           +A++ GG +SE  VSL S +   S ++   + +  +++                    D 
Sbjct: 5   IAIVAGGDTSEFHVSLRSAQGIYSFIDKEKYTLYIVEMHGLDWHVQLPDGAKAPVDRNDF 64

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           S  L    +  D A+  +HG  GEDG +Q   ++L IPY+  G+LA++L+ DK    Q +
Sbjct: 65  SFVLDGEKVTFDFAYITIHGTPGEDGRLQGYFDMLHIPYSCCGVLAASLTYDKFACNQYL 124

Query: 101 SSCGVPVCPSILVNRF----TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
              GV +  S+L+         D    I  P  IKP  GGSS G+  +   + I   + +
Sbjct: 125 KGFGVRIAESLLLRGGQSVTDEDVMEKIGLPCFIKPSLGGSSFGVTKVTAKEQIQPAIAK 184

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNST 212
           + +     ++L+E ++DG E+TCG            +TE+ V  ++++ YE KY+   S 
Sbjct: 185 AFA--EAQEVLVEAFMDGTEITCGCYKTKDKSVVFPITEV-VSYNEYFDYEAKYN-GASD 240

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
            + PA+I  D+ + VQ L    +  +G  GI R D++      K+  LE+N  PGMT  S
Sbjct: 241 EITPARISDDLTRRVQTLTSAIYDILGAYGIIRVDYIITE-GEKINLLEVNTTPGMTATS 299

Query: 273 IFPEMAAYAGYSFRELLLWMVED 295
             P+    AG   ++++  ++E+
Sbjct: 300 FIPQQVRAAGMEMKDVMTDIIEN 322


>gi|319760597|ref|YP_004124535.1| D-alanine--D-alanine ligase family protein [Candidatus Blochmannia
           vafer str. BVAF]
 gi|318039311|gb|ADV33861.1| D-alanine--D-alanine ligase family protein [Candidatus Blochmannia
           vafer str. BVAF]
          Length = 376

 Score =  276 bits (706), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 83/337 (24%), Positives = 150/337 (44%), Gaps = 56/337 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           + ++ GG S+E EVSL S       ++   F++    + +  G  +              
Sbjct: 10  VGLICGGCSTEHEVSLQSAAYIMQHIDKNLFEIVVFWISKHGGWYIIYNDVSRNIFSDSR 69

Query: 47  ---------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPY 79
                                      A LK D+ F ++HG+FGEDG +Q ++ ++ +PY
Sbjct: 70  EQKNKYIPVMIKQFSGRFVFFTDDITSALLKIDVIFPIIHGSFGEDGSLQGLIRIMNLPY 129

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP------PYVIKPL 133
             S IL S++ MDK  +K+++   G+PV      + +   +   +S       P+ IKP+
Sbjct: 130 VGSSILGSSICMDKTITKRLLRDSGLPVASFKTFSHYERSNITFVSFYNMFGLPFFIKPV 189

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
             GSS+G+  +         L  + +  +GD++++E  + G EL C V+G+     +   
Sbjct: 190 NQGSSIGVSKVTNQNVFNKALDVAFA--YGDKIMVEPCIVGRELECAVLGNDDPISSVCG 247

Query: 194 V------PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
                    + FY+Y  KY S  +  ++PA I   I  +V+  +  A Q + C G++R D
Sbjct: 248 EIVINSNNDNGFYTYYKKYISSTTEVIIPALITNIISDKVRHYSICAFQTLSCSGMARID 307

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
                L+ ++   E+N  PG T  S++P++    G S
Sbjct: 308 MFLT-LNNQIIINEVNTLPGFTSHSMYPKLWEATGIS 343


>gi|323436208|ref|ZP_01051417.2| D-alanine-D-alanine ligase [Dokdonia donghaensis MED134]
 gi|321496523|gb|EAQ37719.2| D-alanine-D-alanine ligase [Dokdonia donghaensis MED134]
          Length = 331

 Score =  275 bits (705), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 106/326 (32%), Positives = 160/326 (49%), Gaps = 37/326 (11%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV----------------DRSV-- 42
           +AVLMGG SSE E+SL+SG    ++L+   ++V  + +                D+    
Sbjct: 6   IAVLMGGYSSEYEISLNSGATVVASLDKEKYQVYAVHILAEGWFCVVDGERFTIDKGDFS 65

Query: 43  --GLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
                   +  D  +N +HG  GEDG +QA LELL IP T  G   SAL+ +K  S  V+
Sbjct: 66  FKDASAKKVTFDACYNTIHGTPGEDGKLQAYLELLGIPQTSCGFYESALTFNKRDSLSVL 125

Query: 101 SSCGVPVCPSILVNRFTMDSQH-------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153
           SS GVP+  S+ VN+               +  P  +KP + GSS G+  + K+  +   
Sbjct: 126 SSYGVPMAASVYVNKGDEIDMSFKNLLAIKVGYPCFVKPNRAGSSYGVSKVYKEGDLIAA 185

Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSL 209
           L    ++   +Q+LIE ++ G E++ GV     G   L V EI VP  DF+S E KYS  
Sbjct: 186 LDN--AFKEDNQVLIESFLSGTEVSVGVYDFGNGAEVLPVCEI-VPDGDFFSLEAKYS-G 241

Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
            S  ++PA++      +VQ L    ++ +G +GI R DF+F     K  ++E+N  PG++
Sbjct: 242 KSQEIVPARLDERETADVQGLTKGIYELLGLKGICRIDFIFHE--GKPHFVEVNTNPGLS 299

Query: 270 PVSIFPEMAAYAGYSFRELLLWMVED 295
             SI P     AG S  E+    +E 
Sbjct: 300 KESIIPREFKAAGLSLTEVFGKAIET 325


>gi|225620780|ref|YP_002722038.1| D-alanine--D-alanine ligase [Brachyspira hyodysenteriae WA1]
 gi|225215600|gb|ACN84334.1| D-alanine--D-alanine ligase [Brachyspira hyodysenteriae WA1]
          Length = 328

 Score =  275 bits (705), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 100/309 (32%), Positives = 155/309 (50%), Gaps = 20/309 (6%)

Query: 1   MAVLMGGISSEREVSLSSGKACASAL---EDAGFKVSQIDVDRSVGLV--LAHLKPDLAF 55
           +AVL GG+SSEREVSL SG+    AL   ++       IDV  S  LV  L     +  +
Sbjct: 20  IAVLHGGLSSEREVSLRSGQNVYKALTSFDEIKDNCILIDVKDSYELVKKLKENNIEYCY 79

Query: 56  NVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV-- 113
           N+LHG  GEDG VQ +LE L I YT   IL SA+ M+K+ +K++  S  V     +L+  
Sbjct: 80  NILHGTSGEDGTVQGLLESLNIKYTGENILVSAVCMNKVYTKRIWKSSNVSTADFMLLKD 139

Query: 114 -----NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168
                +     S    + P ++KP+  GSS+G+ +IK            SS    +   +
Sbjct: 140 VKEINDSGIKGSALTFNFPLILKPISDGSSVGVHLIKTKTEFES---VVSSIKDSENYFL 196

Query: 169 EQYVDGIELTCGVMGDAS----LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           E Y+ G E+T G++        +        K++ Y YE KY+   +   +PAK+  +I 
Sbjct: 197 EPYIKGKEITVGLVKQDDENIYVFPILGINSKNEIYDYEAKYTPGKTEMEMPAKLSKEIE 256

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
            +V      A++ +GC G+SR D +      +V+ +E+N Q GMT  S  P MA +    
Sbjct: 257 NKVIETCKKAYKVLGCSGLSRIDAIV-GNDNEVYLMEVNTQGGMTNTSDIPAMAKHINLD 315

Query: 285 FRELLLWMV 293
           F +L+L+++
Sbjct: 316 FNDLVLYIL 324


>gi|282879374|ref|ZP_06288117.1| D-ala D-ala ligase N-terminal domain protein [Prevotella buccalis
           ATCC 35310]
 gi|281298487|gb|EFA90913.1| D-ala D-ala ligase N-terminal domain protein [Prevotella buccalis
           ATCC 35310]
          Length = 333

 Score =  275 bits (705), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 90/327 (27%), Positives = 149/327 (45%), Gaps = 35/327 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI-----------------DVDRSVG 43
           +A++ GG SSE +VS+ S +   S  +   + V  +                  +D++  
Sbjct: 8   IAIVCGGDSSEYDVSIRSAQGLYSFFDKERYNVYIVTIKGQDWNVCFDNGDTASIDKNDF 67

Query: 44  LVLAHLK---PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
             +   +    D A+  +HG  GE+G++Q   ELL IPY+ SG+L  A++ +K      +
Sbjct: 68  SFVKEGEAVLFDYAYITIHGTPGENGIMQGYFELLHIPYSTSGVLVEAMTFNKYVLNNYL 127

Query: 101 SSCGVPVCPSILVNRFTMDS------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154
           ++ GV V  S+LV R   D       Q ++  P  +KP+  GSS G+  +K    +   L
Sbjct: 128 AAFGVKVAKSMLVKRGEEDKLCEQEVQDVLGMPCFVKPVADGSSFGVTKVKNTDQLAPAL 187

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI---AVPKSDFYSYELKYSSLNS 211
               ++   D  +IE ++DG EL+ G        V       V  ++F+ Y+ KY+    
Sbjct: 188 --RRAFMESDTAMIEHFMDGTELSIGCYKTREKSVVFPATEVVSSNEFFDYDAKYN-GQV 244

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS---RKVFWLEINVQPGM 268
             + PA+I     KEV       +  + C GI R D++          V  LE+N  PGM
Sbjct: 245 QEITPARISEQTAKEVAEQTSRIYDILQCNGIIRIDYIITKDEAGQDVVNMLEVNTTPGM 304

Query: 269 TPVSIFPEMAAYAGYSFRELLLWMVED 295
           TP S  P+    AG +  ++L  +VE+
Sbjct: 305 TPTSFIPQQVRAAGLNITDVLTEIVEN 331


>gi|256398138|ref|YP_003119702.1| D-alanine/D-alanine ligase [Catenulispora acidiphila DSM 44928]
 gi|256364364|gb|ACU77861.1| D-alanine/D-alanine ligase [Catenulispora acidiphila DSM 44928]
          Length = 315

 Score =  275 bits (705), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 96/313 (30%), Positives = 157/313 (50%), Gaps = 22/313 (7%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VL GG+S ER+VS+ SG+  A AL  AG +V   D+D ++   L   +PD  F  LHG
Sbjct: 7   VVVLAGGLSHERDVSIRSGRRVADALRSAGVEVQVRDIDAALLPSLLADRPDAVFPTLHG 66

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG VQ IL LL +PY  S   A   + DK  +K  + + G+     + + + T   
Sbjct: 67  ATGEDGAVQGILALLGVPYVGSSAAACRRAFDKPSAKDAIRTAGLATPDWVAIPKTTFRD 126

Query: 121 ----------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                        +  P  +KP +GGSSLG   +   + +P  ++  + + + +  LIE+
Sbjct: 127 LGTHAVLDAVSAALPMPLFVKPARGGSSLGAAAVHTREDLPSAMV--ACFAYDETALIER 184

Query: 171 YVDGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE 226
           ++ G E+   V+    G  +L   EI V  S  Y Y  +Y++  +    PA++  +  K 
Sbjct: 185 HITGREIAVSVVDTGTGPQALPAVEI-VADSGVYDYAARYTAGITEFFAPARLTAEEAKS 243

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYA----G 282
           V++LA  AH  +    +SR+D + D      ++LE+NV PG+T  S+ P  A  A    G
Sbjct: 244 VEQLAVRAHTTLDLSCVSRTDLILDA-DGIPWFLEVNVAPGLTETSLLPLAAGAADLDLG 302

Query: 283 YSFRELLLWMVED 295
             +R+L+  ++ +
Sbjct: 303 VLYRDLVQAVIAE 315


>gi|212550473|ref|YP_002308790.1| D-alanyl-alanine synthetase A [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
 gi|226726290|sp|B6YQA7|DDL_AZOPC RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|212548711|dbj|BAG83379.1| D-alanine-D-alanine ligase [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
          Length = 324

 Score =  275 bits (705), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 90/324 (27%), Positives = 160/324 (49%), Gaps = 33/324 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           +A++ GG SSE  +SL S +    +++   +    + + R+   V               
Sbjct: 4   VAIVSGGYSSECVISLKSAEEVYLSIDKTRYNPYIVLITRNGWTVQGGNKTEFPINKNDF 63

Query: 46  -----LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
                   ++ D A+ ++HG  GEDGL+Q  L++L IPY+  G+L+++++ +K      +
Sbjct: 64  SFIYKGKQIRFDFAYIIIHGTPGEDGLLQGYLDILNIPYSCCGVLSASITFNKYFCNNYL 123

Query: 101 SSCGVPVCPSILVNRFTMDSQ-----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
              GV    SIL+ +             +  P ++KP  GGSS G+  +     I L + 
Sbjct: 124 RGFGVETAKSILLKQREQIISPERIIDKLGLPLIVKPNDGGSSFGVTKVTNITQIQLAIR 183

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNS 211
              ++N G+ +LIE ++ G E+TCG         +L +TEI + K+DF+ +E KY+    
Sbjct: 184 N--AFNEGEGVLIESFIPGTEITCGYYKTKNKQVTLPITEI-ISKNDFFDFEAKYNPGMV 240

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271
             + PA+I   +  E+Q L    +  +G +GI R D++  P  +++  LE+N  PGMT  
Sbjct: 241 EEITPARISKKLTDEIQTLTAHIYDWVGAKGIIRIDYIISPK-KEIKMLEVNTIPGMTAT 299

Query: 272 SIFPEMAAYAGYSFRELLLWMVED 295
           S  P+    AG + +E+L  ++E 
Sbjct: 300 SFIPQQIRAAGLNLKEILTEIIES 323


>gi|161779852|gb|ABX79413.1| VanC4 [Enterococcus casseliflavus]
          Length = 350

 Score =  275 bits (704), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 93/342 (27%), Positives = 159/342 (46%), Gaps = 52/342 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDA--GFKVSQIDVDRSV---------------- 42
           +A++ GG S E  VSL+S  +   AL+ +   + +S I +                    
Sbjct: 4   IAIIFGGNSPEYAVSLASATSAIEALQSSPYDYDLSLIGIAPDAMDWYLYTGELENIRQD 63

Query: 43  -------------------GLVLAHLK----PDLAFNVLHGNFGEDGLVQAILELLEIPY 79
                              G  L+  +    PD+ F ++HG +GEDG +Q + EL+++PY
Sbjct: 64  TWLLDTKHKQKIQPLFEGNGFWLSEEQQTLVPDVLFPIMHGKYGEDGSIQGLFELMKLPY 123

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVN------RFTMDSQHLISPPYVIKPL 133
              G+ ASAL M+K    Q   + GV   P+IL+       R           P   KP 
Sbjct: 124 VGCGVAASALCMNKWLLHQAAEAIGVQSAPTILLTNQDNQQRQIEAFIQTHDFPVFFKPN 183

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
           + GSS GI  +   + I   L ++ +  +   +L+++ + G+E+ CG++G+ SL V    
Sbjct: 184 EAGSSKGITKVTCVEEIAPALKEAFA--YCSAVLLQKNIAGVEIGCGILGNDSLTVGACD 241

Query: 194 VPK--SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
                  F+ +E KY  +++   +PA +P  I  +V+  A L + ++G +G++R DF   
Sbjct: 242 AISLVEGFFDFEEKYQLISAKITVPAPLPETIETKVKEQAQLLYHSLGLKGLARIDFFVT 301

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
               +++  EIN  PG T  S +P M A  G S++ELL  ++
Sbjct: 302 DQ-GELYLNEINTMPGFTSHSRYPAMMAAIGLSYQELLQKLL 342


>gi|325571358|ref|ZP_08146858.1| D-alanine--D-alanine ligase [Enterococcus casseliflavus ATCC 12755]
 gi|325155834|gb|EGC68030.1| D-alanine--D-alanine ligase [Enterococcus casseliflavus ATCC 12755]
          Length = 350

 Score =  275 bits (704), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 92/342 (26%), Positives = 159/342 (46%), Gaps = 52/342 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALED--AGFKVSQIDVDRSV---------------- 42
           +A++ GG S E  VSL+S  +   AL+     + +S I +                    
Sbjct: 4   IAIIFGGNSPEYAVSLASATSAIEALQSSPDDYDLSLIGIAPDAMDWYLYTGELENIRQD 63

Query: 43  -------------------GLVLAHLK----PDLAFNVLHGNFGEDGLVQAILELLEIPY 79
                              G  L+  +    PD+ F ++HG +GEDG +Q + EL+++PY
Sbjct: 64  TWLLDTKHKQKIQPLFEGNGFWLSEAQQTLVPDVLFPIMHGKYGEDGSIQGLFELMKLPY 123

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIKPL 133
              G+ ASAL M+K    Q  ++ GV   P+IL+         +         P   KP 
Sbjct: 124 VGCGVAASALCMNKWLLHQAAAAIGVQSAPTILLTNQANQQDQIEAFIQTHGFPVFFKPN 183

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
           + GSS GI  +   + I   L +  ++ +   +L+++ + G+E+ CG++G+ SL V    
Sbjct: 184 EAGSSKGITKVTCVEEIASALKE--AFTYCSAVLLQKNIAGVEIGCGILGNDSLTVGACD 241

Query: 194 VPK--SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
                  F+ +E KY  +++   +PA +P  I  +V+  A L + ++G +G++R DF   
Sbjct: 242 AISLVDGFFDFEEKYQLISAKITVPAPLPETIETKVKEQAQLLYHSLGLKGLARIDFFVT 301

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
               +++  EIN  PG T  S +P M A  G S++ELL  ++
Sbjct: 302 DQ-GELYLNEINTMPGFTSHSRYPAMMAAIGLSYQELLQKLL 342


>gi|291303857|ref|YP_003515135.1| D-alanine/D-alanine ligase [Stackebrandtia nassauensis DSM 44728]
 gi|290573077|gb|ADD46042.1| D-alanine/D-alanine ligase [Stackebrandtia nassauensis DSM 44728]
          Length = 317

 Score =  275 bits (704), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 96/311 (30%), Positives = 150/311 (48%), Gaps = 18/311 (5%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62
           VL GG+S EREVSL SG+  A AL  A       DVD ++   L    PD     LHG  
Sbjct: 9   VLAGGLSYEREVSLRSGRRVADALSRANVHAELRDVDTNLLPDLIADPPDAVVFALHGGN 68

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ- 121
           GEDG ++++L+L+ IPY      A+  + DK  +K ++   G+P    I + R T     
Sbjct: 69  GEDGSLRSVLDLIGIPYVGPDADAARRAWDKPTAKALLRDAGLPTPEWIALPRETFSDLG 128

Query: 122 ---------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                      +  P  +KP +GGS LG+ V++  + +P  ++    + +GD  L+E + 
Sbjct: 129 AAKLLDRIVDKLGVPLAVKPARGGSGLGVAVVRTAEELPAAMI--GCFAYGDVALVEAFA 186

Query: 173 DGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
            G ++  GV+    G       EI  P  D Y +  +Y+   ST  +PA++   + ++V 
Sbjct: 187 PGKDIAVGVVDTGDGPRVFPAVEIE-PSGDAYDFAARYNPGASTWHVPARLAPRVSEDVA 245

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
            +A  A + +G R +SR D +  P +     LE  V PGMT  S+ P     AG+   EL
Sbjct: 246 AVATAAFRTLGLRDLSRIDMMV-PQAGPPLVLEAKVVPGMTETSLLPMACEAAGHDLGEL 304

Query: 289 LLWMVEDASCL 299
           +  +V+ A   
Sbjct: 305 MAGLVDRAIAR 315


>gi|307564472|ref|ZP_07627013.1| D-ala D-ala ligase N-terminal domain protein [Prevotella amnii CRIS
           21A-A]
 gi|307346832|gb|EFN92128.1| D-ala D-ala ligase N-terminal domain protein [Prevotella amnii CRIS
           21A-A]
          Length = 332

 Score =  275 bits (703), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 90/327 (27%), Positives = 152/327 (46%), Gaps = 36/327 (11%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40
           +A++ GG SSE +VS+ S +   S  +   + +  +DV                    D 
Sbjct: 8   IAIVCGGDSSEHDVSMRSAQGIYSFFDKDRYNIYIVDVKGTDWHVDLPNGDIAAIDKNDF 67

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           S  +    +  D A+  +HG  GE+G++Q   EL+ +PY+ SG+L  AL+ DK      +
Sbjct: 68  SFVVDGKAVFFDYAYITIHGQPGENGMMQGYFELIHLPYSTSGVLVEALTFDKYVLNNYL 127

Query: 101 SSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
              G+ V  SILV R         +  +  P  +KP   GSS G+  +K    +   L  
Sbjct: 128 RGFGINVADSILVRRGESIDEKFVEARLGMPCFVKPAADGSSFGVSKVKNADQLAPAL-- 185

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVM-----GDASLDVTEIAVPKSDFYSYELKYSSLNS 211
             ++   ++++IE+Y+ G+E++ G       G      TE+ V K++F+ Y  KY+    
Sbjct: 186 RVAFMESNEVMIERYLQGMEISQGAYKTKASGTVVFPATEV-VTKNEFFDYNAKYN-GEV 243

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF--DPLSRKVF-WLEINVQPGM 268
             + PA++  +  ++V  L    +  +   GI R D++   D     V   LEIN  PGM
Sbjct: 244 QEITPARMSPETAQKVSALTDKVYNILHANGIIRIDYIISKDEQGNDVINLLEINTTPGM 303

Query: 269 TPVSIFPEMAAYAGYSFRELLLWMVED 295
           TP S  P+    AG   +++L  +VE+
Sbjct: 304 TPTSFIPQQVRAAGLEMKDVLTDIVEN 330


>gi|116328043|ref|YP_797763.1| D-alanine--D-alanine ligase [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116331504|ref|YP_801222.1| D-alanine--D-alanine ligase [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
 gi|122280751|sp|Q04RK6|DDL_LEPBJ RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|122284165|sp|Q052B5|DDL_LEPBL RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|116120787|gb|ABJ78830.1| D-alanine--D-alanine ligase [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116125193|gb|ABJ76464.1| D-alanine--D-alanine ligase [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
          Length = 351

 Score =  275 bits (703), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 103/345 (29%), Positives = 157/345 (45%), Gaps = 56/345 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           +AV  GG S+E  +S+ +G      L   G  V  I + +  G V               
Sbjct: 4   IAVFFGGSSTEHSISIRTGCFICRTLHTMGHSVKPILLTQDGGWVVPLQYRISIPYEAVN 63

Query: 46  --------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
                               +++L  D+ F  LHG  GEDG +Q  L +L +PYT SG+ 
Sbjct: 64  SSDLFEEEFQKTNGVSKMDFISNLDADIVFLGLHGGKGEDGSIQGFLRVLGVPYTGSGVA 123

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNR--------FTMDSQHLISPPYVIKPLKGGS 137
           ASAL+MDK R+ Q+    G  V P   V +         T+     +  P  +KP++GGS
Sbjct: 124 ASALAMDKTRANQIFLQSGQKVAPFFEVEKLGYTNSPEETVIKLMSLGFPQFLKPVEGGS 183

Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA--------SLDV 189
           S+    I   + +   L     +    +++ + ++ G E++CGV+           +L  
Sbjct: 184 SVSTYKITNQEQLSRQLAL--IFESDSKVMSQSFLAGTEVSCGVLERYRNGKLERIALPA 241

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
           TEI VP  +F+ +E KY    S  + PA+I       VQ LA  AH ++GCRG SRSDF+
Sbjct: 242 TEI-VPGGEFFDFESKYKQGGSREITPARISKQEMTRVQELAIDAHTSLGCRGYSRSDFI 300

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
              +  +   LE N  PGMT  S+ P+ A  AG +  E+   ++E
Sbjct: 301 I--VGGEPHILETNTLPGMTETSLIPQQAKAAGITMEEVFADLIE 343


>gi|311063700|ref|YP_003970425.1| d-alanine--d-alanine ligase DdlA [Bifidobacterium bifidum PRL2010]
 gi|310866019|gb|ADP35388.1| DdlA D-alanine--D-alanine ligase [Bifidobacterium bifidum PRL2010]
          Length = 381

 Score =  275 bits (703), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 90/370 (24%), Positives = 157/370 (42%), Gaps = 77/370 (20%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           + V+ GG + E  +S  S      AL+   F+   + + +    ++    P         
Sbjct: 9   VVVMYGGKADEHSISCISTAGVLRALDTDRFEPVPVGITKQGQWIVDGEDPRGWDMADGL 68

Query: 52  --------------------------------------DLAFNVLHGNFGEDGLVQAILE 73
                                                 D    VLHG +GEDG +Q +LE
Sbjct: 69  PVVEKTPGSRDVVLDVALGQDGFFARNDDGTLSSLGHVDAVLPVLHGPYGEDGTIQGLLE 128

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------------- 120
           ++++PY   G+LASA  MDK  +K ++++ G+PV P I V+    D+             
Sbjct: 129 MMDVPYVGCGVLASAACMDKHYTKVLLAAAGIPVAPGITVDARGFDAASRFAADADGLLA 188

Query: 121 ---QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS-SWNHGDQLLIEQYVDGIE 176
              +  ++ P  +KP + GSS G+  ++              + +H  ++LIEQ +D  E
Sbjct: 189 QVEEAGLAYPLFVKPSRAGSSFGVTKVEHAGDAAELAAAVFEASHHDWRILIEQGIDARE 248

Query: 177 LTCGVMGDASLD------VTEIAVPK-----SDFYSYELKYSSLNSTHVL-PAKIPLDIY 224
           + C V+   +          EI + K       FY ++ KY   +++HV  PA +P +  
Sbjct: 249 IECAVLCPKAGSEPQASWPGEIVLDKRNSGGDQFYDFDSKYMDSSASHVEVPANLPQETL 308

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
           ++V+  A  A +A+   G+SR D    P   +V   EIN  PG TP+S++P+     G  
Sbjct: 309 QQVRETAIKAFKAVDGAGLSRVDTFVTP-DGEVMVNEINTMPGFTPISMYPKAWEATGIG 367

Query: 285 FRELLLWMVE 294
           + EL+  +++
Sbjct: 368 YTELITKLID 377


>gi|255531745|ref|YP_003092117.1| D-alanyl-alanine synthetase A [Pedobacter heparinus DSM 2366]
 gi|255344729|gb|ACU04055.1| D-alanine/D-alanine ligase [Pedobacter heparinus DSM 2366]
          Length = 328

 Score =  275 bits (703), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 88/324 (27%), Positives = 151/324 (46%), Gaps = 32/324 (9%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI-----------------DVDRS-- 41
           +A+L GG + E  VS+ S    A  L+   F V +I                 +VDR+  
Sbjct: 5   IALLTGGTTGEWVVSVKSAATIAQNLDADKFDVYKIMLTQQGWFYEPADSVKIEVDRNDF 64

Query: 42  -VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
            + L    +K +  F  +HG+ GEDG +Q   ++L IPYT    L SA++M+K  +K +V
Sbjct: 65  SINLKGKKVKFEGVFIAIHGSPGEDGKLQGYFDMLGIPYTTCDALTSAVTMNKGYTKAIV 124

Query: 101 SS-CGVPVCPSILVNRFT----MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
                + +  S  + + T       +  +  PY +KP  GGSS+G+  +     +   + 
Sbjct: 125 DGIAELNIAKSAQIFKGTPYSLEQIKKTLKVPYFVKPNNGGSSIGMSKVNHPDDLQAAI- 183

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNS 211
              ++    Q+LIE+++ G E T GV+        L  TE+   K +F+ +E KY+   +
Sbjct: 184 -DRAFKEDSQILIEEFISGREFTIGVVKLDGEITVLPATEVETAK-EFFDFEAKYTPGVA 241

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271
           T   PA I  +  + V ++    +  + CRG+ R DF+ +      +++EIN  PG T  
Sbjct: 242 TETTPAPIRKETLERVTQIVKNVYLKLNCRGVVRIDFILNGDEGDFYFIEINTIPGQTAT 301

Query: 272 SIFPEMAAYAGYSFRELLLWMVED 295
           S  P+  A AG    +    ++ +
Sbjct: 302 SFIPQQVAAAGMKLNDFYTKLIRE 325


>gi|224282359|ref|ZP_03645681.1| D-alanyl-alanine synthetase A [Bifidobacterium bifidum NCIMB 41171]
          Length = 381

 Score =  275 bits (703), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 88/370 (23%), Positives = 156/370 (42%), Gaps = 77/370 (20%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           + V+ GG + E  +S  S      AL+   F+   + + +    ++    P         
Sbjct: 9   VVVMYGGKADEHSISCISTAGVLRALDTDRFEPVPVGITKQGQWIVDGEDPRGWDMADGL 68

Query: 52  --------------------------------------DLAFNVLHGNFGEDGLVQAILE 73
                                                 D    VLHG +GEDG +Q +LE
Sbjct: 69  PVVEKTPGSRDVVLDVVLGQDGFFARNDDGTLSSLGHVDAVLPVLHGPYGEDGTIQGLLE 128

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------------- 120
           ++++PY   G+LASA  MDK  +K ++++ G+PV P I V+    D+             
Sbjct: 129 MMDVPYVGCGVLASAACMDKHYTKVLLAAAGIPVAPGITVDARGFDAASRFAADADGLLA 188

Query: 121 ---QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS-SWNHGDQLLIEQYVDGIE 176
              +  ++ P  +KP + GSS G+  ++              + +H  ++LIEQ +D  E
Sbjct: 189 RVEEAGLAYPLFVKPSRAGSSFGVTKVEHAGDAAELAAAVFEASHHDWRILIEQGIDARE 248

Query: 177 LTCGVMGDASLDVTEIAVP-----------KSDFYSYELKYSSLNSTHVL-PAKIPLDIY 224
           + C V+   +    + + P              FY ++ KY   +++HV  PA +P +  
Sbjct: 249 IECAVLCPKAGSEPQASWPGEIVLDKRNSGDDQFYDFDSKYMDSSASHVEVPANLPQETL 308

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
           ++V+  A  A +A+   G+SR D    P   +V   EIN  PG TP+S++P+     G  
Sbjct: 309 QQVRETAVKAFKAVDGAGLSRVDTFVTP-DGEVMVNEINTMPGFTPISMYPKAWEATGIG 367

Query: 285 FRELLLWMVE 294
           + EL+  +++
Sbjct: 368 YTELITKLID 377


>gi|94987124|ref|YP_595057.1| D-alanine-D-alanine ligase and related ATP-grasp enzymes [Lawsonia
           intracellularis PHE/MN1-00]
 gi|166198488|sp|Q1MQJ1|DDL_LAWIP RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|94731373|emb|CAJ54736.1| D-alanine-D-alanine ligase and related ATP-grasp enzymes [Lawsonia
           intracellularis PHE/MN1-00]
          Length = 302

 Score =  275 bits (703), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 91/298 (30%), Positives = 160/298 (53%), Gaps = 6/298 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLA-HLKPDLAFNVLH 59
           + +L GG SSEREVSL S +   SA+ + G  V+ +D       ++    K D+AF +LH
Sbjct: 3   ILLLAGGWSSEREVSLQSAELITSAMIEYGHTVTCLDPLYDFDKIVEVAEKQDVAFILLH 62

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN-RFTM 118
           G+ GEDG++QA+LE +  PY  +    S L++ K  +K +    G+    S+ +  +  +
Sbjct: 63  GSPGEDGILQALLERVGCPYQGASPAGSLLALHKAAAKALFRREGLLTPKSVFLPLKPEV 122

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
             +  ++ P  +K   GGSS+ + ++   + +   +   + +N G+++L+E+ + G E+T
Sbjct: 123 TWEPGLNYPIFVKSNIGGSSVNVHLVTNYEELF--IAMEALFNAGEEVLLEEAIIGQEVT 180

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           CGV+ D +L    I   +  F+ Y  KY+   +  + PA +   + K +Q  A  AH  +
Sbjct: 181 CGVIDDQALPPILIR-SQGKFFDYYNKYAKNGAEEICPAPLEPHVLKHIQEYALRAHNTL 239

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             +G SR+DF+       +F LE+N  PGM+  S+ P  AA  G +F EL+  +++ A
Sbjct: 240 NLQGCSRADFILR-DDELLFLLEVNTIPGMSATSLVPREAAAMGLTFPELVEKLIQLA 296


>gi|310286804|ref|YP_003938062.1| D-alanine--D-alanine ligase [Bifidobacterium bifidum S17]
 gi|309250740|gb|ADO52488.1| D-alanine--D-alanine ligase [Bifidobacterium bifidum S17]
          Length = 381

 Score =  275 bits (703), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 88/370 (23%), Positives = 156/370 (42%), Gaps = 77/370 (20%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           + V+ GG + E  +S  S      AL+   F+   + + +    ++    P         
Sbjct: 9   VVVMYGGKADEHSISCISTAGVLRALDTDRFEPVPVGITKQGQWIVDGEDPRGWDMADGL 68

Query: 52  --------------------------------------DLAFNVLHGNFGEDGLVQAILE 73
                                                 D    VLHG +GEDG +Q +LE
Sbjct: 69  PVVEKTPGSRDVVLDVALGQDGFFARNDDGTLSSLGHVDAVLPVLHGPYGEDGTIQGLLE 128

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------------- 120
           ++++PY   G+LASA  MDK  +K ++++ G+PV P I V+    D+             
Sbjct: 129 MMDVPYVGCGVLASAACMDKHYTKVLLAAAGIPVAPGITVDARGFDAASRFAADADGLLA 188

Query: 121 ---QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS-SWNHGDQLLIEQYVDGIE 176
              +  ++ P  +KP + GSS G+  ++              + +H  ++LIEQ +D  E
Sbjct: 189 RVEEAGLAYPLFVKPSRAGSSFGVTKVEHAGDAAELAAAVFEASHHDWRILIEQGIDARE 248

Query: 177 LTCGVMGDASLDVTEIAVP-----------KSDFYSYELKYSSLNSTHVL-PAKIPLDIY 224
           + C V+   +    + + P              FY ++ KY   +++HV  PA +P +  
Sbjct: 249 IECAVLCPKAGSEPQASWPGEIVLDKRNSGDDQFYDFDSKYMDSSASHVEVPANLPQETL 308

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
           ++V+  A  A +A+   G+SR D    P   +V   EIN  PG TP+S++P+     G  
Sbjct: 309 QQVRETAVKAFKAVDGAGLSRVDTFVTP-DGEVMVNEINTMPGFTPISMYPKAWEATGIG 367

Query: 285 FRELLLWMVE 294
           + EL+  +++
Sbjct: 368 YTELITKLID 377


>gi|313204537|ref|YP_004043194.1| d-alanine--d-alanine ligase [Paludibacter propionicigenes WB4]
 gi|312443853|gb|ADQ80209.1| D-alanine--D-alanine ligase [Paludibacter propionicigenes WB4]
          Length = 325

 Score =  275 bits (703), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 88/323 (27%), Positives = 159/323 (49%), Gaps = 33/323 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFK---------VSQIDVDRSVGLVLAHLKP 51
           +A++ GG SSE  VSL S     S ++   +          V Q+++     + +     
Sbjct: 5   IAIVAGGNSSEVVVSLDSVAGLYSFMDKERYNLFIVTIVGSVWQVELSDDEKITIDKNDF 64

Query: 52  -----------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
                      D A+  +HG  GE+G++Q   EL+ +PY+  G+LA+A++ +K    Q +
Sbjct: 65  SFTKSGVKTLFDFAYITIHGTPGENGILQGYFELIGLPYSCCGVLAAAITFNKFTCNQYL 124

Query: 101 SSCGVPVCPSILVNR----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
              GV V  S+++         +    I  P  +KP  GGSS G+  +K  + +   +  
Sbjct: 125 KGFGVRVSDSLVLRAGQTVSDEEVAQKIGFPCFVKPNVGGSSFGVTKVKSIEQLQPAI-- 182

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNST 212
             ++  GD+++IE ++ G E+TCG+         L +TE+ VPK++F+ ++ KY      
Sbjct: 183 EKAFTEGDEVMIEAFMSGTEITCGIYKTKTKTQVLPITEV-VPKNEFFDFDAKYK-GEVE 240

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
            + PA+I   + + VQ+L    +  +GC+GI R D++       +  LE+N  PGMT  S
Sbjct: 241 EITPARISTSLTERVQKLTSAIYDILGCKGIVRIDYIISE-GDVINLLEVNTTPGMTATS 299

Query: 273 IFPEMAAYAGYSFRELLLWMVED 295
             P+  A AG   ++++  ++E+
Sbjct: 300 FIPQQVAAAGLDIKDVMTEIIEN 322


>gi|257126515|ref|YP_003164629.1| D-alanine--D-alanine ligase [Leptotrichia buccalis C-1013-b]
 gi|257050454|gb|ACV39638.1| D-alanine/D-alanine ligase [Leptotrichia buccalis C-1013-b]
          Length = 308

 Score =  275 bits (703), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 86/302 (28%), Positives = 153/302 (50%), Gaps = 10/302 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD--RSVGLVLAHLKPDLAFNVL 58
           + V+ GG+S+EREVSL +G    + L    ++V  I +D  + V   +  L  D  +  L
Sbjct: 6   VGVIRGGVSTEREVSLKTGSEIVANLNRDKYEVFDIVIDSEKEVFEKVKELNLDFVYIAL 65

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT- 117
           HG FGEDG +QAIL+ L + Y+  G+++SA+ MDK  SK++V+  GV +     V     
Sbjct: 66  HGVFGEDGRIQAILQSLGVAYSGPGVMSSAVCMDKEFSKRIVAGYGVRIAKWKSVRVGET 125

Query: 118 ---MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
                 +  +    V+KP  GGSS+G+  ++  + +   L     +    + LIE+ + G
Sbjct: 126 VDFETIKKELGNRVVVKPNSGGSSIGVSFVENQEELEKGLELV--FGMDKEALIEEVLHG 183

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
           +E++  V+         I     D++ YE KY+   +   +  + P ++  E+ + A  +
Sbjct: 184 VEISVPVIDGKVFPTIRIEALAGDYFDYESKYAKGGANEYV-FEFPEEVQAEINKFAKDS 242

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           +  + C G +R DF+        +++E+N  PGMT  S+ P+  A  GY + + L  ++E
Sbjct: 243 YYGLKCEGFARIDFMVVNEE-TPYFMEVNTSPGMTSASLLPKSTASKGYDYAQTLDLLIE 301

Query: 295 DA 296
            +
Sbjct: 302 SS 303


>gi|254455880|ref|ZP_05069309.1| D-alanine--D-alanine ligase B [Candidatus Pelagibacter sp.
           HTCC7211]
 gi|207082882|gb|EDZ60308.1| D-alanine--D-alanine ligase B [Candidatus Pelagibacter sp.
           HTCC7211]
          Length = 304

 Score =  274 bits (702), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 115/307 (37%), Positives = 182/307 (59%), Gaps = 14/307 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + +L GGIS ER +SL +G   A  L+  G+++   + D+S+   +   KP + FN LHG
Sbjct: 5   ILILSGGISKERLISLDTGFQVAKELKKHGYEIRISEPDKSLEKKIKEFKPSVIFNALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG +Q ILE  +IPYTHSG++AS+++MDK  SK++     +     I  +   ++ 
Sbjct: 65  QFGEDGYIQTILEQFKIPYTHSGVIASSIAMDKEISKKIFKKNKIITPKHIKYSFDKINL 124

Query: 121 Q------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
           +        +  P V+KP+  GSS+ + +  K ++I   L +  S+    Q++IE+++ G
Sbjct: 125 ELVNKINKELKFPVVVKPINEGSSVNVFICTK-KNINQILKKMKSYK---QVMIEEFIGG 180

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL-NSTHVLPAKIPLDIYKEVQRLAFL 233
            E+   +MG+  L   E+  PK  FY Y+ KY++   + H++P  +  +   EV  +A  
Sbjct: 181 REIQVAIMGNKKLGAIELK-PKRKFYDYQAKYNTNAKTQHIIPVDLDKNKLNEVLNIALK 239

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           AH+ IGCRG++RSDF F     K + LEIN QPGMT +S+ PE+AAY G SF +L+ W++
Sbjct: 240 AHKKIGCRGVTRSDFKFYK--NKFYLLEINTQPGMTKLSLVPEIAAYQGISFYKLINWIL 297

Query: 294 EDASCLR 300
           +DAS  R
Sbjct: 298 KDASTKR 304


>gi|281420976|ref|ZP_06251975.1| D-alanine--D-alanine ligase [Prevotella copri DSM 18205]
 gi|254966986|gb|ACT97527.1| putative D-alanyl-alanine synthetase A [uncultured organism]
 gi|254967007|gb|ACT97539.1| putative D-alanyl-alanine synthetase A [uncultured organism]
 gi|254967009|gb|ACT97540.1| putative D-alanyl-alanine synthetase A [uncultured organism]
 gi|254967011|gb|ACT97541.1| putative D-alanyl-alanine synthetase A [uncultured organism]
 gi|281404894|gb|EFB35574.1| D-alanine--D-alanine ligase [Prevotella copri DSM 18205]
          Length = 331

 Score =  274 bits (702), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 90/326 (27%), Positives = 154/326 (47%), Gaps = 35/326 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40
           +A++ GG SSE +VSL SG+   S  +   + +  +DV                    D 
Sbjct: 8   IAIVCGGDSSEHDVSLRSGQGLYSFFDKERYNIYLVDVKGTDWHVALDNGETIEIDKNDF 67

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           S  +   H+  D A+  +HG  GE+G++Q   +L+ +PY+ SG+L  A++ DK      +
Sbjct: 68  SFVMNGKHVYFDYAYITIHGQPGENGVMQGYFDLIHLPYSTSGVLVEAMTFDKYVLNNYL 127

Query: 101 SSCGVPVCPSILVNR----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
              G+ V  SIL+ R       +    I  P  +KP   GSS G+  +K    +   L  
Sbjct: 128 RGFGINVADSILLRRGEAYDEEEIAKRIGMPCFVKPAADGSSFGVSKVKNADQLAPAL-- 185

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDAS----LDVTEIAVPKSDFYSYELKYSSLNST 212
             ++   ++++IE ++DG E++ G+   A     L  TE+ V  ++F+ Y+ KY+     
Sbjct: 186 RVAFMESNEVMIEGFLDGTEISQGIYKTAEKTVVLPATEV-VTTNEFFDYDAKYN-GQVQ 243

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL---SRKVFWLEINVQPGMT 269
            + PA++  +  +EV +     +  +   GI R D++         KV  LEIN  PGMT
Sbjct: 244 EITPARLSPETAEEVAKTTSRIYDILHANGIIRIDYIISKDKDGKDKVNMLEINTTPGMT 303

Query: 270 PVSIFPEMAAYAGYSFRELLLWMVED 295
             S  P+    AG   +++L  +VE+
Sbjct: 304 VTSFIPQQVRAAGLDIKDVLSEIVEN 329


>gi|34763164|ref|ZP_00144131.1| D-alanine--D-alanine ligase [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
 gi|237742548|ref|ZP_04573029.1| D-alanine-D-alanine ligase [Fusobacterium sp. 4_1_13]
 gi|294784929|ref|ZP_06750217.1| D-alanine--D-alanine ligase [Fusobacterium sp. 3_1_27]
 gi|27887162|gb|EAA24266.1| D-alanine--D-alanine ligase [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
 gi|229430196|gb|EEO40408.1| D-alanine-D-alanine ligase [Fusobacterium sp. 4_1_13]
 gi|294486643|gb|EFG34005.1| D-alanine--D-alanine ligase [Fusobacterium sp. 3_1_27]
          Length = 287

 Score =  274 bits (702), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 102/296 (34%), Positives = 160/296 (54%), Gaps = 15/296 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59
           +AV MGG SSE+E+SL SG+A   +L+   +    + +D ++          DLA+ VLH
Sbjct: 3   IAVFMGGTSSEKEISLKSGEAVLESLKKQSYDAYGVILDEKNQVTAFLDNDYDLAYLVLH 62

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G  GE+G +QA+L++L   YT SG+LASA++MDK ++KQ+  S G+    +         
Sbjct: 63  GGNGENGKIQAVLDILGKKYTGSGVLASAITMDKDKTKQIAQSVGIKTPKAY------RT 116

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
            + +   P +IKP+  GSS G+ +    +     + +        + +IE Y+ G ELT 
Sbjct: 117 VEEIEKFPVIIKPVDEGSSKGVFLCNNREEAEKAVKKI------VRPIIEDYIVGEELTV 170

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
           GV+   +L V +I       Y Y+ KY+   S H  PAKI    YKE  ++A   H   G
Sbjct: 171 GVLNGEALGVLKIIPQADVLYDYDSKYAKGGSIHEFPAKIENKSYKEAMKIAEKIHSEFG 230

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
            +G SRSDF+      ++++LE+N  PGMT  S+ P++A   GY+F +++   VE 
Sbjct: 231 MKGTSRSDFILSE--GELYFLEVNSSPGMTKTSLIPDLATLKGYTFDDVVRITVET 284


>gi|325954146|ref|YP_004237806.1| D-alanine--D-alanine ligase [Weeksella virosa DSM 16922]
 gi|323436764|gb|ADX67228.1| D-alanine--D-alanine ligase [Weeksella virosa DSM 16922]
          Length = 329

 Score =  274 bits (701), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 96/323 (29%), Positives = 161/323 (49%), Gaps = 33/323 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-------------------DRS 41
           +AV+ GG S E  +SL S +     +    ++  ++ +                   D S
Sbjct: 4   VAVVAGGYSDESVISLKSCELIYQNINTEKYEPIRVRILKDAWYAEIDGEKYPINKADFS 63

Query: 42  VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
                   K DL +N +HG  GEDG +QA  +L+ +PY       SAL+ +K     V+S
Sbjct: 64  FERNGKKEKFDLVYNTIHGTPGEDGYLQAYFDLIGLPYNGCDSYQSALTFNKKDCIAVLS 123

Query: 102 SCGVPVCPSILVNRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
             G+P   S+ + +            +  P  +KP K GSSLGI  + +++ IP  L   
Sbjct: 124 KYGIPHAKSVYLYQGEKVEPKKIVEQLGLPCFVKPNKSGSSLGISKVHREEDIPKAL--E 181

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTH 213
            ++    ++LIE ++DG+E++ GV+        L +TEI V  ++F+ YE KY    S  
Sbjct: 182 LAFAEDKEVLIEAFLDGLEVSVGVLKYKGKTTVLGITEI-VSDNEFFDYEAKYD-GKSQE 239

Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273
           + PA+I  +  + V+ +A   + ++   G SR++++   +  + + LEIN  PGM+P SI
Sbjct: 240 ITPARISQETEESVKAIATKVYDSLNMNGFSRAEYII--VDNQPYLLEINTLPGMSPASI 297

Query: 274 FPEMAAYAGYSFRELLLWMVEDA 296
           FP+ AAYAG S +EL+   ++ A
Sbjct: 298 FPQQAAYAGISLQELVQNELDFA 320


>gi|226324322|ref|ZP_03799840.1| hypothetical protein COPCOM_02103 [Coprococcus comes ATCC 27758]
 gi|225206770|gb|EEG89124.1| hypothetical protein COPCOM_02103 [Coprococcus comes ATCC 27758]
          Length = 320

 Score =  274 bits (701), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 85/319 (26%), Positives = 152/319 (47%), Gaps = 47/319 (14%)

Query: 23  ASALEDAGFKVSQIDVDRSVGLVLAHLKP-------------------------DLAFNV 57
              L+   ++++ + + +     +   +                          D+AF V
Sbjct: 1   MKHLDKDKYEITLVGIAKDGKWYILKQEDNDLSKDTWLDGAEVVEGVFNLLRSQDVAFPV 60

Query: 58  LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF- 116
           LHG +GEDG +Q + EL ++PY    + AS+  MDK+ +K+V  S G+P   S+ V +  
Sbjct: 61  LHGLYGEDGTIQGLFELAQLPYVGCRVFASSACMDKIFAKKVFESAGIPQVKSVYVKKRN 120

Query: 117 -----------------TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
                                   +  P  IK  + GSS+G     K++ +   L +++ 
Sbjct: 121 DGKLVVVEKNMEETKEVEASIMKELGMPCFIKASRSGSSVGCYRCDKEEDLMAKLEEAA- 179

Query: 160 WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA--VPKSDFYSYELKYSSLNSTHVLPA 217
             +   +++E+ VD IEL   V+G+  + V+ +   +P  +FY++E KY    S   +PA
Sbjct: 180 -KYDTHIVVEECVDCIELETAVLGNDDIIVSRVGQIMPHGEFYTFESKYEDAESKTCIPA 238

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
           K+  +I +++++ A  A +AI   G+SR DF  D  +  V+  EIN  PG T +S++P++
Sbjct: 239 KVDEEIQEQIRKYAVRAFKAIDGHGLSRVDFFLDKKTNHVYLNEINTLPGFTSISMYPQL 298

Query: 278 AAYAGYSFRELLLWMVEDA 296
               GYS+ ELL  ++E A
Sbjct: 299 MEDYGYSYSELLDKLIEIA 317


>gi|319953857|ref|YP_004165124.1| d-alanine--d-alanine ligase [Cellulophaga algicola DSM 14237]
 gi|319422517|gb|ADV49626.1| D-alanine--D-alanine ligase [Cellulophaga algicola DSM 14237]
          Length = 326

 Score =  274 bits (701), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 101/328 (30%), Positives = 161/328 (49%), Gaps = 34/328 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40
           +A++MGG SSE ++SL SG       +   F +  I +                    D 
Sbjct: 5   IAIIMGGYSSEYKISLKSGSVVYKYTDKEKFNLFCIHIFKEKWVYVTENKEEFPVNKHDF 64

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           SV +    +  D  FN +HG+ GEDGL+Q+  ELL IP T      SAL+ +K     V+
Sbjct: 65  SVEINNQKITFDCIFNAIHGSPGEDGLMQSYFELLNIPQTSCDAYQSALTFNKRDLLSVL 124

Query: 101 SSCGVPVCPSILVNRFTMDSQH----LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
              G+    S  +N      +      +  P  +K  K GSS GI+ + K + +   +  
Sbjct: 125 KPYGIKAAASYYLNLGDAIDEESIVAKVGLPCFVKANKAGSSFGIMKVYKKEDLKAAI-- 182

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMG----DASLDVTEIAVPKSDFYSYELKYSSLNST 212
            +++   D+++IE ++DG E++ GV+        L VTEI V ++DF+ YE KY+   S 
Sbjct: 183 ENAYKEDDEIIIEGFLDGTEVSVGVLKYKGVTKVLPVTEI-VSENDFFDYEAKYA-GKSQ 240

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
            + PA+I     ++V  LA  A+  +  +G SRS+F+F  +  + F LE+N  PG+T  S
Sbjct: 241 EITPARITKTQEQKVSDLAKKAYDVLKMKGFSRSEFIF--IDDEPFMLEMNTNPGLTEES 298

Query: 273 IFPEMAAYAGYSFRELLLWMVEDASCLR 300
           I P+ A  AG S  EL    + +A  ++
Sbjct: 299 ILPQQAKVAGISLPELFENAINEALTVK 326


>gi|44805036|gb|AAS47778.1| D-alanine-D-serine ligase [Clostridium innocuum]
          Length = 355

 Score =  274 bits (701), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 86/349 (24%), Positives = 145/349 (41%), Gaps = 55/349 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44
           +A+++GG S E  VSL S  +    +    +++  I + +                    
Sbjct: 6   LAIILGGKSDEYPVSLHSAGSLIHKINKEHYELIFIGISKDGKWYAYSGDVDGIEHDTWL 65

Query: 45  --------------------------VLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIP 78
                                         ++ D  F +LHG  GEDG +Q + EL  IP
Sbjct: 66  CEAHCTPCVLSSSEGCRGFLKLHADGTFTRIEVDCIFPILHGKNGEDGTIQTLFELSGIP 125

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--------MDSQHLISPPYVI 130
           Y   G +  A+ MDK  +  V+   G+   P + V              ++  +  P  I
Sbjct: 126 YVGCGHMRFAICMDKEMAHIVMEHAGISCAPFVCVYEADDLDYRKVYEHAKETLGLPIFI 185

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--- 187
           KP   GSS GI  ++        +  +   +   ++++E  ++G E+   VMG+  L   
Sbjct: 186 KPANAGSSFGIHRMESFDGFEEAMKDAFYHDGKGKVILETTIEGFEIGVAVMGNKELFAG 245

Query: 188 DVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
            V EI    + F+ YE KY  ++S    PA+I   +++E + +A  A++A+ C+G++R D
Sbjct: 246 SVDEIETA-APFFDYEGKYEMVDSHIYCPARISPKLFEEAREIAKKAYRAMNCKGMTRVD 304

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
               P    +   E+N  PG T  S +P M   AG  F EL+  +V  A
Sbjct: 305 MFVTPED-TIILNEVNTIPGFTDTSRYPTMMKEAGIPFPELIDKLVALA 352


>gi|291459933|ref|ZP_06599323.1| D-alanine--D-alanine ligase [Oribacterium sp. oral taxon 078 str.
           F0262]
 gi|291417274|gb|EFE90993.1| D-alanine--D-alanine ligase [Oribacterium sp. oral taxon 078 str.
           F0262]
          Length = 360

 Score =  274 bits (701), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 86/352 (24%), Positives = 154/352 (43%), Gaps = 59/352 (16%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH-------------- 48
           V+ GG S+E EVS  S +  A  ++   +++  + + +     LA               
Sbjct: 9   VIFGGRSTEHEVSCRSVQNIARDVDRERYELVLLGITKEGEWRLAEDLSSIEDGSWREGK 68

Query: 49  ------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84
                                    + D+ F  LHG +GEDG +Q + EL  IPY  SG+
Sbjct: 69  RAMLLPDASLRSLLIFEKDGSSRLQRIDVIFPALHGKYGEDGSIQGLFELSGIPYVGSGV 128

Query: 85  LASALSMDKMRSKQV----VSSCGVPVCPSILVNRFTMDSQHLI--------SPPYVIKP 132
           LASA+SMDK+ +K +    +   G+     + V+   +     I          P  +KP
Sbjct: 129 LASAVSMDKLFTKVIAAQPLKKLGLRQARCLPVDAAELGRMEEILNRVEKSFQYPVFVKP 188

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192
              GSS G+  ++K + +P  L  ++  +   +LL+E+ V G EL C ++    + +   
Sbjct: 189 ANAGSSCGVSRVEKREELPDALRAAAKVDR--KLLVEETVYGRELECALLRGPDMKIHAS 246

Query: 193 AVPK----SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
            + +    + FY Y+ KY++ +S   +  ++  +  + ++  A     A+   G++R DF
Sbjct: 247 GLGEIRAAASFYDYDAKYNNPDSVTDVNPELDAENAELIRSAAKAIFAAVDGYGLARVDF 306

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
                     + EIN  PG T +S++P +    G   REL+  +++ A C R
Sbjct: 307 FLTEDG--PVFNEINTLPGFTAISMYPMLWEAKGIGKRELIQRLIDSA-CQR 355


>gi|225575667|ref|ZP_03784277.1| hypothetical protein RUMHYD_03760 [Blautia hydrogenotrophica DSM
           10507]
 gi|225037124|gb|EEG47370.1| hypothetical protein RUMHYD_03760 [Blautia hydrogenotrophica DSM
           10507]
          Length = 344

 Score =  274 bits (701), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 95/339 (28%), Positives = 158/339 (46%), Gaps = 49/339 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------------DRSVGLV 45
           + VL GG S+ER+VS+ SG     AL   G +   +DV               D  V   
Sbjct: 3   IVVLAGGTSTERDVSIVSGTGVCKALRQKGHQAILVDVFAGLESVKLEAAFEGDYDVEAA 62

Query: 46  LAHLK---------------------------PDLAFNVLHGNFGEDGLVQAILELLEIP 78
             ++K                            D+ F  LHG  GE+G VQA  +L++I 
Sbjct: 63  AEYIKSFNERIQELEKQRRDFFGPNVVALCKAADIVFLALHGENGENGKVQAAFDLMKIK 122

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFTMDSQHLISPPYVIKPLKG 135
           YT +G   SA++MDK  +K +     VP    + +   NR    S H +  P V+K   G
Sbjct: 123 YTGTGHTGSAMAMDKGITKALFQMYQVPTPKGVTMTVKNRRNDLSVHGMDFPVVVKTCCG 182

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195
           GSS+G+ +++  ++    L +  ++++ ++++IE+Y+ G E T  V+   +  +  I  P
Sbjct: 183 GSSIGVYIVQDQEAYVKALDE--AFSYEEEVVIEEYIQGKEYTVAVVDGEAYPIVLIE-P 239

Query: 196 KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255
            S FY Y+ KY +  +    PA +  +  +++Q  A   ++A+  +   R DF+ D    
Sbjct: 240 VSGFYDYKNKYQAGATIETCPAPLDEEKTRKMQEYAVRGYKALALQAYGRLDFMMDEAGN 299

Query: 256 KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            ++ LE N  PGMTP S+ P+ AA  G  +  L   ++E
Sbjct: 300 -MYCLEANTLPGMTPTSLIPQEAAALGMDYPTLCEHLIE 337


>gi|56751739|ref|YP_172440.1| D-alanyl-alanine synthetase A [Synechococcus elongatus PCC 6301]
 gi|81301184|ref|YP_401392.1| D-alanyl-alanine synthetase A [Synechococcus elongatus PCC 7942]
 gi|81561775|sp|Q5N1A0|DDL_SYNP6 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|123556293|sp|Q31KL4|DDL_SYNE7 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|56686698|dbj|BAD79920.1| D-alanyl-D-alanine ligase [Synechococcus elongatus PCC 6301]
 gi|81170065|gb|ABB58405.1| D-alanine--D-alanine ligase [Synechococcus elongatus PCC 7942]
          Length = 347

 Score =  274 bits (701), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 97/353 (27%), Positives = 163/353 (46%), Gaps = 71/353 (20%)

Query: 1   MAVLMGGISSEREV---------------SLSSGKACASALEDAGFKVSQIDVDRSVGL- 44
           + +L GG S E EV               S               ++V    +D+  G  
Sbjct: 6   VGLLFGGRSGEHEVSIRSAAAIASALADPS-----------NRDRYQVLPFYIDKEGGWH 54

Query: 45  -------VLAHLKP-------------------DLAFNVLHGNFGEDGLVQAILELLEIP 78
                  VLA+ KP                   ++ F +LHG  GEDG +Q +L L++ P
Sbjct: 55  SGETAAQVLANQKPLFVEEPSDRWQFPADCRDVEVWFPILHGPNGEDGTIQGLLTLMQRP 114

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT------------MDSQHLISP 126
           +  SG+L SAL MDK+  KQ  +   +P    + VNR                 +  +  
Sbjct: 115 FVGSGVLGSALGMDKIAMKQAFAQASLPQVAYVAVNRSQVFSDPCRYTSLLEQIETELGY 174

Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDA 185
           P  +KP   GSS+GI  ++    +   L Q+++ +   +L+IE  +D   E+ C V+G+ 
Sbjct: 175 PCFVKPANLGSSVGIAKVRDRAELEAALDQAAALDR--RLIIEAAIDNPREVECAVLGND 232

Query: 186 SLDVTEIAVP--KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
               + +      SDFY YE KY+   +  ++PA++  ++ +++Q LA  A QA+   G+
Sbjct: 233 YPQASILGEITYDSDFYDYETKYTDGKAQLLIPAQLSAELQQKLQELAIAAFQAVDASGL 292

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           SR DF  D    ++F  EIN  PG T +S++P++ A +G +F +L+  +++ A
Sbjct: 293 SRLDFFLDSQ-GQIFINEINTLPGFTALSMYPQLWAASGVAFPDLVHRLIQLA 344


>gi|58424569|gb|AAW73606.1| D-alanine-D-alanine ligase A [Xanthomonas oryzae pv. oryzae
           KACC10331]
          Length = 347

 Score =  273 bits (700), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 85/332 (25%), Positives = 151/332 (45%), Gaps = 55/332 (16%)

Query: 17  SSGKACASALEDAGFKVSQIDVDRSVGL-------------------------------- 44
            S +    AL+   F+   I +D+                                    
Sbjct: 2   QSARNILDALDPQRFEPVLIGIDKQGQWHVNDPDSFLLHADDPARIALHRSGRGVALLPG 61

Query: 45  ----VLAHLKP-------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDK 93
                L  ++P       D+ F ++HG  GEDG +Q +L +  +P+  SG+L SA++MDK
Sbjct: 62  AQQQQLRPIQPEQALAQIDVVFPIVHGTLGEDGSLQGLLRMANLPFVGSGVLGSAVAMDK 121

Query: 94  MRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIKPLKGGSSLGIIVIKKD 147
             +K+V+    + V P +  +R T     +      +  P  +KP   GSS+G+  ++  
Sbjct: 122 DMAKRVLRDARLAVAPFVCFDRHTAAHADVDTLIAQLGLPLFVKPANQGSSVGVSQVRTA 181

Query: 148 QSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYELK 205
            +    L  + +++H  ++L+E  V G E+ C V+G+A    +     V    FYSY  K
Sbjct: 182 DAFAAALALALAYDH--KVLVEAAVAGREIECAVLGNAVPHASVCGEVVVHDAFYSYATK 239

Query: 206 Y-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           Y S   +  V+PA I     + +Q++A  A+QA+GC G++R D        ++   E+N 
Sbjct: 240 YISEHGAEIVIPADIDAQTQQRIQQIAVQAYQALGCAGMARVDVFL-CADGRIVINEVNT 298

Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            PG T +S++P++   +G  +R L+  ++E A
Sbjct: 299 LPGFTRISMYPKLWQASGLDYRGLITRLIELA 330


>gi|288800658|ref|ZP_06406115.1| D-alanine--D-alanine ligase [Prevotella sp. oral taxon 299 str.
           F0039]
 gi|288332119|gb|EFC70600.1| D-alanine--D-alanine ligase [Prevotella sp. oral taxon 299 str.
           F0039]
          Length = 332

 Score =  273 bits (700), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 85/328 (25%), Positives = 147/328 (44%), Gaps = 37/328 (11%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50
           +A++ GG SSE EVSL S +   S  +   + V  +++ +    V               
Sbjct: 7   IAIVCGGYSSEHEVSLRSAQGIYSFFDKERYNVYIVEISKESWWVNVEENQQLPIDKNNF 66

Query: 51  ----------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
                      D A+  +HG  GE+GL+Q   +++++PY+ SG+L  A++ +K      +
Sbjct: 67  SFELNGNKVVFDYAYITIHGTPGENGLLQGYFDMIQLPYSTSGVLVEAMTFNKFVLNNYL 126

Query: 101 SSCGVPVCPSILVNRFTMDS------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154
              G  V  S++V +           +  +  P  IKP   GSS G+  +K    IP  L
Sbjct: 127 RGFGYNVAKSMVVYKDEAHKISAEKIESELGMPCFIKPAADGSSFGVSKVKSKSDIPAAL 186

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS----LDVTEIAVPKSDFYSYELKYSSLN 210
               ++N  ++++IE ++ G E++ G          L  TE+ V +++F+ Y  KY+   
Sbjct: 187 --ELAFNESNEVMIESFLQGTEISIGCYATKEGLVSLPATEV-VTENEFFDYNAKYN-GQ 242

Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK---VFWLEINVQPG 267
              + PA++  D  + V       +  + C GI R D++    S     +  LEIN  PG
Sbjct: 243 VQEITPARLHPDTAERVANEVKEIYSLLRCNGIIRIDYIISKDSNGKDVLNLLEINTTPG 302

Query: 268 MTPVSIFPEMAAYAGYSFRELLLWMVED 295
           MT  S  P+    AG +  ++L  +VE 
Sbjct: 303 MTATSFIPQQVRAAGLNMTDVLTNIVER 330


>gi|170781258|ref|YP_001709590.1| D-alanine--D-alanine ligase [Clavibacter michiganensis subsp.
           sepedonicus]
 gi|169155826|emb|CAQ00951.1| D-alanine--D-alanine ligase [Clavibacter michiganensis subsp.
           sepedonicus]
          Length = 335

 Score =  273 bits (700), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 100/328 (30%), Positives = 155/328 (47%), Gaps = 41/328 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           ++VL GG S ER+VS++S      AL   G +V  +D         A  +          
Sbjct: 3   ISVLFGGESEERDVSIASAAQVVPALRQLGHEVVAVDTAHGALDAAAEARILTPDVGLHP 62

Query: 52  ---------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84
                                      DL F  LHG  GEDG +QA+LEL  IP+T SG 
Sbjct: 63  PTSAELATASAGGSGAVLRLPADLRDSDLVFLALHGGSGEDGRLQALLELAGIPFTGSGS 122

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
           L SAL+MDK  +K ++ + GV      L++      +  +  P V+KP   GS++G+ V+
Sbjct: 123 LGSALAMDKDVAKTLLRAGGVRTPDW-LIDPEPGAVEAALGFPVVVKPTGQGSTVGLSVV 181

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYEL 204
           +    +P  L  ++       +++E++V G ELT GV+   +L V EI VP  + ++Y  
Sbjct: 182 RAAADLPAALELAA---RHGTVMVERFVRGRELTVGVLDGEALAVGEIGVPVDEAFTYAA 238

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           KY +       PA +P ++ +E +  A  AH+ +   G SRSDF  D     ++ +E N 
Sbjct: 239 KYQAGAIAETFPADLPSEVAEEARAAALAAHRILRLDGYSRSDFRLDDA-GILWIIEANS 297

Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWM 292
            PG+T  S+ P+ AA  G  + EL   +
Sbjct: 298 LPGLTATSLLPQSAAAVGIGYAELCERI 325


>gi|89891675|ref|ZP_01203178.1| D-alanine, D-alanine ligase [Flavobacteria bacterium BBFL7]
 gi|89516010|gb|EAS18674.1| D-alanine, D-alanine ligase [Flavobacteria bacterium BBFL7]
          Length = 326

 Score =  273 bits (699), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 95/323 (29%), Positives = 160/323 (49%), Gaps = 34/323 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40
           + VLMGG SSE ++SL SG   A  L+   F V  I +                    D 
Sbjct: 4   IGVLMGGYSSEWQISLKSGAVIAKHLDKNLFNVFPIAILEDGWYYSDDANNRHVVDKNDF 63

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           S+ +   H+  D  +N +HG  GEDG +QA LELL IP T      SA++ +K     V+
Sbjct: 64  SITVNDKHITFDCLYNTIHGTPGEDGKIQAYLELLNIPQTSCDSYQSAITFNKRDCIAVL 123

Query: 101 SSCGVPVCPSILVNRFTM----DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
              G+     I +N+       D    +  PY +K  + GSS G+  + K + +   L  
Sbjct: 124 KPWGIYTGKHIYLNKGADYNATDISKRLGLPYFVKANRSGSSFGVSKVYKTEELEKAL-- 181

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGV--MGDA--SLDVTEIAVPKSDFYSYELKYSSLNST 212
             +++  D++++E ++DG E++ G+  +G+   +L  TEI V  +DF+ YE KY    S 
Sbjct: 182 ELAFSVDDEVILESFLDGTEVSVGIYQLGEEIIALPPTEI-VSDNDFFDYEAKY-QGKSQ 239

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
            + PA+I +++   VQ  +   +  + C+GI+R+DF+F        ++EIN  PGM+  S
Sbjct: 240 EITPARISVELTLAVQEQSKRIYSVLKCKGIARADFIFH--DGTPHFIEINTNPGMSTES 297

Query: 273 IFPEMAAYAGYSFRELLLWMVED 295
           I P+       + +++   ++E+
Sbjct: 298 IIPQQIRATDKTLQQVFTEVIEN 320


>gi|23464945|ref|NP_695548.1| D-alanyl-alanine synthetase A [Bifidobacterium longum NCC2705]
 gi|39930901|sp|Q8G7C4|DDL_BIFLO RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|23325541|gb|AAN24184.1| D-alanine--D-alanine ligase [Bifidobacterium longum NCC2705]
          Length = 428

 Score =  273 bits (699), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 86/280 (30%), Positives = 142/280 (50%), Gaps = 25/280 (8%)

Query: 39  DRSVGLVLAHLK-PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSK 97
           D  +  VL  L   D    VLHG +GEDG VQ +LE++ +PY   G+ ASA  MDK  +K
Sbjct: 146 DPEMHHVLTSLGHVDAVLPVLHGPYGEDGTVQGLLEMMGVPYVGCGVFASAACMDKHYTK 205

Query: 98  QVVSSCGVPVCPSILVNRFTMDSQHL--------ISPPYVIKPLKGGSSLGIIVIKKDQS 149
            V+ + G+P  P + V+     +  +        ++ P  +KP + GSS G+  ++K   
Sbjct: 206 VVLDAAGIPTAPGVTVDARNFTAADVLAEIEDAGLTYPLFVKPSRAGSSFGVTKVEKADD 265

Query: 150 IP-----LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP--------- 195
                  L    +++  H  ++L+EQ +DG E+ C V+   + D  E + P         
Sbjct: 266 RETQQDRLAAAIATAGEHDWKVLVEQGIDGREIECAVLCPKAGDEPEASWPGEIVLDHQN 325

Query: 196 KSDFYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
              FY ++ KY   +++HV  PA +P+ + ++V+ +A  A +A+   G+SR D    P  
Sbjct: 326 DDQFYDFDSKYMDASASHVEVPANLPVSVLEDVRDVARRAFKAVDGAGLSRVDTFVTP-D 384

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             V   EIN  PG TP+S++P+     G S+ EL+  ++E
Sbjct: 385 GTVMVNEINTMPGFTPISMYPKAWDATGVSYTELITRLIE 424



 Score = 46.3 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 10/51 (19%), Positives = 21/51 (41%)

Query: 1  MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP 51
          + VL GG + E  +S  S      A++   F+   + + +    ++    P
Sbjct: 39 VVVLYGGRADEHSISCISTAGVLGAMDTERFEPIPVGITKDGKWIINGEDP 89


>gi|261879907|ref|ZP_06006334.1| D-alanine-D-alanine ligase [Prevotella bergensis DSM 17361]
 gi|270333419|gb|EFA44205.1| D-alanine-D-alanine ligase [Prevotella bergensis DSM 17361]
          Length = 333

 Score =  273 bits (699), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 83/326 (25%), Positives = 150/326 (46%), Gaps = 34/326 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-----------------VDRSVG 43
           +A++ GG S E +VS+ S +   S  +   + +  +D                 +DR+  
Sbjct: 8   IAIVCGGDSPEHDVSIRSAQGLYSFFDKDRYNIYIVDVRGQDWHVAFDDGDIAKIDRNDF 67

Query: 44  LVLAHLK----PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
             +         D A+  +HG  GE+G++Q   +L+ +PY+ SG+L  +++ DK      
Sbjct: 68  SFIGQDGKAVVFDYAYITIHGTPGENGIMQGYFDLIHLPYSTSGVLVESMTFDKYVLNNY 127

Query: 100 VSSCGVPVCPSILVNR----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
           + + GV V  SIL+ R         +  +  P  +KP   GSS G+  +K    +   L 
Sbjct: 128 LRAFGVNVADSILLRRDEAYDEAAVEARLGMPVFVKPSANGSSFGVSKVKCADQLAPAL- 186

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI---AVPKSDFYSYELKYSSLNST 212
             +++   D+++IE +++G E++ G        V       V K++F+ Y+ KY+     
Sbjct: 187 -RTAFMESDEVMIEGFLEGTEISVGCYKTREKSVVFPATEVVTKNEFFDYDAKYN-GQVK 244

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF---DPLSRKVFWLEINVQPGMT 269
            + PA++  +  K V       +  + C GI R D++    D  + K+  LEIN  PGMT
Sbjct: 245 EITPARLSPETTKRVAEETSRIYDILRCNGIIRIDYIISKDDEGNDKINMLEINTTPGMT 304

Query: 270 PVSIFPEMAAYAGYSFRELLLWMVED 295
             S  P+    AG   +++L  +VE+
Sbjct: 305 ETSFIPQQVRAAGLDIKDVLSDIVEN 330


>gi|187918073|ref|YP_001883636.1| D-alanyl-alanine synthetase A [Borrelia hermsii DAH]
 gi|229463733|sp|B2RZR0|DDL_BORHD RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|119860921|gb|AAX16716.1| D-alanine--D-alanine ligase [Borrelia hermsii DAH]
          Length = 365

 Score =  273 bits (698), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 86/342 (25%), Positives = 162/342 (47%), Gaps = 50/342 (14%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDA-GFKVSQIDVDR--------------------- 40
           ++ GG+S E E+SL S     SAL     + +    +D+                     
Sbjct: 8   LIFGGVSFEHEISLRSAYGIYSALMKLDKYNLYPSFIDKITGIWYLLDSVPDAPELIKRD 67

Query: 41  -----------SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
                       + +    L+ D+ F ++HG  GEDG +Q  L++++IP   +GIL SA+
Sbjct: 68  SSAIISLIPGCGIFVNDEDLEIDVVFPIVHGRTGEDGAIQGFLKMMDIPCVGAGILGSAI 127

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPLKGGSSLG 140
           S++K   K ++ S  +P+ P I   ++           D +  ++ P ++KP   GSS+G
Sbjct: 128 SINKYFCKLLLKSFNIPLVPFIGFRKYDYFLDKEGIKKDIKQSLNYPVIVKPAMLGSSIG 187

Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV---TEIAVPKS 197
           I +   D  I        ++ +   +++E+++   E+ C V+G+  + +    EI V   
Sbjct: 188 ISIAYNDTQIEK--CIEEAFEYDLTVVVEKFMKVREIECSVIGNEQIKIFTPGEIVVQDF 245

Query: 198 DFYSYELKYSS---LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
            FY Y+ KYS+    +    +PA++ +    +++  AFL ++ +  RG++R DFL +  +
Sbjct: 246 VFYDYDAKYSTIPGNSVVFNIPARLDMKHLLDIKEYAFLTYKCLELRGMARIDFLIEKDT 305

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             ++  EIN  PG T +S+F +M  + G  +  L+  +V  A
Sbjct: 306 NLIYVNEINTIPGFTDISMFSKMCEHDGLDYESLVDNLVSLA 347


>gi|284034929|ref|YP_003384860.1| D-alanine/D-alanine ligase [Kribbella flavida DSM 17836]
 gi|283814222|gb|ADB36061.1| D-alanine/D-alanine ligase [Kribbella flavida DSM 17836]
          Length = 315

 Score =  273 bits (698), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 105/311 (33%), Positives = 161/311 (51%), Gaps = 18/311 (5%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62
           VL GG+S ER+VSL SG+  A AL   G +V Q DVD S+   L +  PD  F VLHG  
Sbjct: 9   VLAGGLSHERDVSLRSGRRVADALRSVGVEVEQRDVDASLVERLRNDPPDAVFPVLHGVT 68

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
           GEDG ++ +L+L  +PY  +   A   + DK  +  +V S G+    S+++   T     
Sbjct: 69  GEDGALRQVLDLYGVPYVGADAAACRTAFDKPVASTMVRSAGLRSPESVVLGHDTFRELG 128

Query: 123 L----------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                      +  P V+KP +GGS+LG  +++    +P  ++    + +G   LIE+YV
Sbjct: 129 AAALMEAVVGQLGLPLVVKPARGGSALGASIVRTIDELPSAMVN--CYAYGPVALIERYV 186

Query: 173 DGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           +G E+   V+    G  +L   EI  P S FY YE +Y++  +  V+PA++   +     
Sbjct: 187 EGTEVAVTVVDTGDGPWALPAVEIQ-PDSGFYDYEARYTAGATQFVVPARLDAAVAAACA 245

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           + A  AH+A+G R +SRSD + D      ++LE+NV PGMT  S+ P  A  AG     L
Sbjct: 246 QAAVTAHRALGLRDLSRSDLVVDAQ-GVPWFLEVNVAPGMTETSLVPLAAEAAGIELGVL 304

Query: 289 LLWMVEDASCL 299
              ++  A+  
Sbjct: 305 CRDLLATAAAR 315


>gi|148546760|ref|YP_001266862.1| D-alanine--D-alanine ligase [Pseudomonas putida F1]
 gi|148510818|gb|ABQ77678.1| D-alanine--D-alanine ligase [Pseudomonas putida F1]
          Length = 352

 Score =  273 bits (698), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 96/349 (27%), Positives = 157/349 (44%), Gaps = 52/349 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLA------------- 47
           +A++ GG SSE  V+L S     +AL   G +V  + +DR                    
Sbjct: 6   IALVFGGRSSEHSVALRSAATIHAALMALGHRVHCVGIDREGNWRYQGEPCQFPGAVDRS 65

Query: 48  -----------------------HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84
                                   +  DL F  LHG +GEDG +Q +  +  +P   SG+
Sbjct: 66  APLISIRPGHRSLSYTTQESGTVEIGIDLLFPALHGRWGEDGTIQGLAAMCGLPCVGSGV 125

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVNR---FTMDSQHLISPPYVIKPLKGGSSLGI 141
           L SA++MDK  +K++V S G+ V P + +N    +    + L S    +KP   GSS+G+
Sbjct: 126 LGSAMAMDKDVTKRMVQSAGLVVGPWLALNSMRPWEELVECLGSSTLFVKPATSGSSIGV 185

Query: 142 IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM----GDASLDVTEIAVPKS 197
             +    ++      + +     ++L+E  V G E+ CGV+    G  +  V EI   + 
Sbjct: 186 SRVSN--ALEYAAAFAIAAREDTKVLVEAAVCGREIECGVLELEEGLMASVVGEIIKKEG 243

Query: 198 D-FYSYELKYSSLNST-HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255
             +Y Y+ KY S + T   +P+ +P DI   +Q L+  A + +  +G +R DF       
Sbjct: 244 HAYYDYQAKYDSNSVTGLRVPSLLPPDIVARIQALSVQAFRCLELKGYARVDFFLTE-EG 302

Query: 256 KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE----DASCLR 300
           ++   EIN  PG T  S++P+M   +GY   +L+  +VE     AS  R
Sbjct: 303 EIILNEINTLPGFTSASMYPKMFECSGYPPPKLVGALVEYGLSSASKER 351


>gi|254967048|gb|ACT97560.1| putative D-alanine-D-alanine ligase [uncultured organism]
          Length = 326

 Score =  273 bits (698), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 88/323 (27%), Positives = 154/323 (47%), Gaps = 33/323 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40
           +A++ GG +SE  VSL S +   S ++   + +  +++                    D 
Sbjct: 5   IAIVAGGDTSEFHVSLRSAQGIYSFIDKEKYTLYIVEMHGLDWHVQLPDGAKAPVDRNDF 64

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           S  L    +  D A+  +HG  GEDG +Q   ++L IPY+  G+LA++L+ DK    Q +
Sbjct: 65  SFVLDGEKVTFDFAYITIHGTPGEDGRLQGYFDMLHIPYSCCGVLAASLTYDKFACNQYL 124

Query: 101 SSCGVPVCPSILVNRF----TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
              GV +  S+L+         D    I  P  IKP  GGSS G+  +   + I   +  
Sbjct: 125 KGFGVRIAESLLLRGGQSVTDEDVMEKIGLPCFIKPSLGGSSFGVTKVTAKEQIQPAI-- 182

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNST 212
           + ++    ++++E ++DG E+TCG            +TE+ V  ++++ YE KY+   S 
Sbjct: 183 TKAFAEAQEVVVEAFMDGTEITCGCYKTKDRSVVFPITEV-VSHNEYFDYEAKYN-GASD 240

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
            + PA+   D+ + VQ L    +  +G  GI R D++      K+  LE+N  PGMT  S
Sbjct: 241 EITPARKKDDLTRRVQTLTSAIYDILGAYGIIRVDYIITE-GEKINLLEVNTTPGMTATS 299

Query: 273 IFPEMAAYAGYSFRELLLWMVED 295
             P+    AG   ++++  ++E+
Sbjct: 300 FIPQQVRAAGMEMKDVMTDIIEN 322


>gi|282859072|ref|ZP_06268204.1| D-ala D-ala ligase N-terminal domain protein [Prevotella bivia
           JCVIHMP010]
 gi|282588152|gb|EFB93325.1| D-ala D-ala ligase N-terminal domain protein [Prevotella bivia
           JCVIHMP010]
          Length = 332

 Score =  273 bits (698), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 89/327 (27%), Positives = 151/327 (46%), Gaps = 36/327 (11%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40
           +A++ GG SSE +VSL S +   S  +   + +  +DV                    D 
Sbjct: 8   IAIVCGGDSSEHDVSLRSAQGIYSFFDKERYNIYIVDVKGTDWYVNLPNGDTAPIDKNDF 67

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           S       +  D A+  +HG  GE+G++Q   EL+ +PY+ SG+L  A++ DK      +
Sbjct: 68  SFVFEGKAVVFDYAYITIHGQPGENGVMQGYFELIHLPYSTSGVLVEAMTFDKFVLNNYL 127

Query: 101 SSCGVPVCPSILVNRF----TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
              G  V  SILV R       + +  +  P  +KP   GSS G+  +K    +   L  
Sbjct: 128 RGFGFNVADSILVRRGETINEKEIEERLGMPCFVKPAADGSSFGVSKVKNADQLAPAL-- 185

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDA-----SLDVTEIAVPKSDFYSYELKYSSLNS 211
             ++     ++IE+++DG+E++ G              TE+ V K++F+ Y  KY+    
Sbjct: 186 RVAFMESSDVMIEKFLDGMEISQGAYKTKDKGVVVFPATEV-VTKNEFFDYNAKYN-GEV 243

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK---VFWLEINVQPGM 268
             + PA++  +  K+V +L    ++ +   GI R D++    +     +  LEIN  PGM
Sbjct: 244 EEITPARMNPETAKKVAKLTAQIYEILHANGIIRIDYIISKDAEGKDVINMLEINTTPGM 303

Query: 269 TPVSIFPEMAAYAGYSFRELLLWMVED 295
           TP S  P+    AG   +E+L  +VE+
Sbjct: 304 TPTSFIPQQVRAAGLDIKEVLTEIVEN 330


>gi|317481946|ref|ZP_07940971.1| D-alanine-D-alanine ligase [Bifidobacterium sp. 12_1_47BFAA]
 gi|322688440|ref|YP_004208174.1| D-alanine-D-alanine ligase [Bifidobacterium longum subsp. infantis
           157F]
 gi|322690460|ref|YP_004220030.1| D-alanine-D-alanine ligase [Bifidobacterium longum subsp. longum
           JCM 1217]
 gi|316916513|gb|EFV37910.1| D-alanine-D-alanine ligase [Bifidobacterium sp. 12_1_47BFAA]
 gi|320455316|dbj|BAJ65938.1| D-alanine-D-alanine ligase [Bifidobacterium longum subsp. longum
           JCM 1217]
 gi|320459776|dbj|BAJ70396.1| D-alanine-D-alanine ligase [Bifidobacterium longum subsp. infantis
           157F]
          Length = 395

 Score =  273 bits (698), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 86/280 (30%), Positives = 142/280 (50%), Gaps = 25/280 (8%)

Query: 39  DRSVGLVLAHLK-PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSK 97
           D  +  VL  L   D    VLHG +GEDG VQ +LE++ +PY   G+ ASA  MDK  +K
Sbjct: 113 DPEMHHVLTSLGHVDAVLPVLHGPYGEDGTVQGLLEMMGVPYVGCGVFASAACMDKHYTK 172

Query: 98  QVVSSCGVPVCPSILVNRFTMDSQHL--------ISPPYVIKPLKGGSSLGIIVIKKDQS 149
            V+ + G+P  P + V+     +  +        ++ P  +KP + GSS G+  ++K   
Sbjct: 173 VVLDAAGIPTAPGVTVDARNFTAADVLAEIEDAGLTYPLFVKPSRAGSSFGVTKVEKADD 232

Query: 150 IP-----LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP--------- 195
                  L    +++  H  ++L+EQ +DG E+ C V+   + D  E + P         
Sbjct: 233 RETQQDRLAAAIATAGEHDWKVLVEQGIDGREIECAVLCPKAGDEPEASWPGEIVLDHQN 292

Query: 196 KSDFYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
              FY ++ KY   +++HV  PA +P+ + ++V+ +A  A +A+   G+SR D    P  
Sbjct: 293 DDQFYDFDSKYMDASASHVEVPANLPVSVLEDVRDVARRAFKAVDGAGLSRVDTFVTP-D 351

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             V   EIN  PG TP+S++P+     G S+ EL+  ++E
Sbjct: 352 GTVMVNEINTMPGFTPISMYPKAWDATGVSYTELITRLIE 391



 Score = 45.9 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 10/51 (19%), Positives = 21/51 (41%)

Query: 1  MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP 51
          + VL GG + E  +S  S      A++   F+   + + +    ++    P
Sbjct: 6  VVVLYGGRADEHSISCISTAGVLGAMDTERFEPIPVGITKDGKWIINGEDP 56


>gi|26991036|ref|NP_746461.1| D-alanine--D-alanine ligase A [Pseudomonas putida KT2440]
 gi|39931111|sp|Q88EV6|DDLA_PSEPK RecName: Full=D-alanine--D-alanine ligase A; AltName:
           Full=D-Ala-D-Ala ligase A; AltName: Full=D-alanylalanine
           synthetase A
 gi|24986067|gb|AAN69925.1|AE016631_4 D-alanine--D-alanine ligase A [Pseudomonas putida KT2440]
          Length = 352

 Score =  273 bits (698), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 96/349 (27%), Positives = 157/349 (44%), Gaps = 52/349 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLA------------- 47
           +A++ GG SSE  V+L S     +AL   G +V  + +DR                    
Sbjct: 6   IALVFGGRSSEHSVALRSAATIHAALMALGHRVHCVGIDREGNWRYQGEPCQFPGAVDRS 65

Query: 48  -----------------------HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84
                                   +  DL F  LHG +GEDG +Q +  +  +P   SG+
Sbjct: 66  APLISIRPGHRSLSYTTQESGTVEIGIDLLFPALHGRWGEDGTIQGLAAMCGLPCVGSGV 125

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVNR---FTMDSQHLISPPYVIKPLKGGSSLGI 141
           L SA++MDK  +K++V S G+ V P + +N    +    + L S    +KP   GSS+G+
Sbjct: 126 LGSAMAMDKDVTKRMVQSAGLVVVPWLAMNSMRPWEELVECLGSSTLFVKPATSGSSIGV 185

Query: 142 IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM----GDASLDVTEIAVPKS 197
             +    ++      + +     ++L+E  V G E+ CGV+    G  +  V EI   + 
Sbjct: 186 SRVSN--ALEYAAAFAIAAREDTKVLVEAAVCGREIECGVLELEEGLMASVVGEIIKKEG 243

Query: 198 D-FYSYELKYSSLNST-HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255
             +Y Y+ KY S + T   +P+ +P DI   +Q L+  A + +  +G +R DF       
Sbjct: 244 HAYYDYQAKYDSNSVTGLRVPSLLPPDIVARIQALSVQAFRCLELKGYARVDFFLTE-EG 302

Query: 256 KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE----DASCLR 300
           ++   EIN  PG T  S++P+M   +GY   +L+  +VE     AS  R
Sbjct: 303 EIILNEINTLPGFTSASMYPKMFECSGYPPPKLVGALVEYGLSSASKER 351


>gi|302531349|ref|ZP_07283691.1| D-alanine-D-alanine ligase B [Streptomyces sp. AA4]
 gi|302440244|gb|EFL12060.1| D-alanine-D-alanine ligase B [Streptomyces sp. AA4]
          Length = 316

 Score =  272 bits (697), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 102/315 (32%), Positives = 163/315 (51%), Gaps = 22/315 (6%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG+S ER+VSL SG+  ++AL   G  V + D D  +   L   +PD     LHG
Sbjct: 6   VAVLAGGLSHERDVSLRSGRRLSAALRAEGLTVEEWDTDAGLLERLRTQRPDAVVVALHG 65

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117
             GE+G VQ +LE+L++P+  +       + DK  +K  V   G      I++   T   
Sbjct: 66  GEGENGSVQTVLEMLDVPFVGTHSQGCRRAWDKPTAKAFVQQAGFSTPDWIVLPHSTFRE 125

Query: 118 ------MDSQ-HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                 +D+    +  P ++KP +GGS+LG  V+++   +P  ++    + +GD +L E+
Sbjct: 126 LGAQSVLDAMVERLGLPLILKPDQGGSALGTQVVREAAELPAAMV--GCFAYGDTVLAER 183

Query: 171 YVDGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE 226
           +VDG+E+   V+    G  +L   EI VP+S  Y Y  +Y++  +    PA+I  +  K 
Sbjct: 184 FVDGVEVAVTVIEGENGAEALPAVEI-VPESGVYDYTARYTAGLTDFFTPARISDEAAKA 242

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS-- 284
           V  LA  AH+ +G R ISR+D +  P    V +LE+N+ PG+T  S  P     AG +  
Sbjct: 243 VSELAVGAHRWLGLRDISRTDAVITP-DGGVHFLEVNLSPGLTETSTVPMAVEAAGTTLG 301

Query: 285 --FRELLLWMVEDAS 297
             F +L+   V  A+
Sbjct: 302 SVFADLVARAVARAN 316


>gi|49066399|gb|AAT49292.1| putative immunity protein [Prevotella nigrescens]
 gi|242332478|tpg|DAA06526.1| TPA_exp: NigB [Prevotella nigrescens]
          Length = 328

 Score =  272 bits (697), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 85/325 (26%), Positives = 148/325 (45%), Gaps = 33/325 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40
           +A++ GG SSE +VSL S +   S  +   + +  +DV                    D 
Sbjct: 5   IAIVCGGDSSEHDVSLRSAQGLYSFFDKERYNIYIVDVKGTDWHVNLDNGHTAPINKNDF 64

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           S       +  D A+  +HG  GE+G++Q   EL+ IPY+   +LASAL+ DK    + +
Sbjct: 65  SFNNNGQTVFFDYAYITIHGRPGENGIMQGYFELVNIPYSTCDVLASALTFDKFVLNRYL 124

Query: 101 SSCGVPVCPSILVN----RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
            S G+ V  SIL+         +    I  P  +KP   GSS G+  +K    +   L +
Sbjct: 125 KSYGIHVSESILLRLGETYNEREIAEKIGMPCFVKPATDGSSFGVSKVKNADQLAPALRK 184

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV---TEIAVPKSDFYSYELKYSSLNSTH 213
             ++    ++++E ++DG+E+T G+       V       V  ++F+ Y  KY+      
Sbjct: 185 --AFMESSEVMVESFLDGVEITQGIYKTREKSVPFPITEVVTSNEFFDYNAKYN-GEVDE 241

Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK---VFWLEINVQPGMTP 270
           + PA+I  ++ ++V  +    +  +   GI R D++    +     +  LE+N  PGMT 
Sbjct: 242 ITPARISKELAEKVTEVTSHIYDILHANGIIRIDYIITKDNDGNDVINMLEVNTTPGMTV 301

Query: 271 VSIFPEMAAYAGYSFRELLLWMVED 295
            S  P+    AG   + +L  +VE+
Sbjct: 302 TSFVPQQVRAAGLDIKNVLSDIVEN 326


>gi|312133370|ref|YP_004000709.1| ddla [Bifidobacterium longum subsp. longum BBMN68]
 gi|311772595|gb|ADQ02083.1| DDlA [Bifidobacterium longum subsp. longum BBMN68]
          Length = 395

 Score =  272 bits (697), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 87/280 (31%), Positives = 143/280 (51%), Gaps = 25/280 (8%)

Query: 39  DRSVGLVLAHLK-PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSK 97
           D  +  VL  L   D    VLHG +GEDG VQ +LE++ +PY   G+ ASA  MDK  +K
Sbjct: 113 DPEMHHVLTSLGHVDAVLPVLHGPYGEDGTVQGLLEMMGVPYVGCGVFASAACMDKHYTK 172

Query: 98  QVVSSCGVPVCPSILVNRFTMDSQHL--------ISPPYVIKPLKGGSSLGIIVIKKDQS 149
            V+ + G+P  P + V+     +  +        ++ P  +KP + GSS G+  ++K   
Sbjct: 173 VVLDAAGIPTAPGVTVDARNFTAADVLAEIEDAGLTYPLFVKPSRAGSSFGVTKVEKADD 232

Query: 150 IP-----LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP--------- 195
                  L    +++  H  ++L+EQ +DG E+ C V+   + D  E + P         
Sbjct: 233 RETQQDRLAAAIATAGEHDWKVLVEQGIDGREIECAVLCPKADDEPEASWPGEIVLDHQN 292

Query: 196 KSDFYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
              FY ++ KY   +++HV  PA +P+ + ++V+ +A  A +A+   G+SR D    P  
Sbjct: 293 DDQFYDFDSKYMDASASHVEVPANLPVSVLEDVRDVARRAFKAVDGAGLSRVDTFVTP-D 351

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             V   EIN  PG TP+S++P+    AG S+ EL+  ++E
Sbjct: 352 GTVMVNEINTMPGFTPISMYPKAWDAAGVSYTELITRLIE 391



 Score = 45.9 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 10/51 (19%), Positives = 21/51 (41%)

Query: 1  MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP 51
          + VL GG + E  +S  S      A++   F+   + + +    ++    P
Sbjct: 6  VVVLYGGRADEHSISCISTAGVLGAMDTERFEPIPVGITKDGKWIINGEDP 56


>gi|295099013|emb|CBK88102.1| D-alanine--D-alanine ligase [Eubacterium cylindroides T2-87]
          Length = 347

 Score =  272 bits (697), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 82/337 (24%), Positives = 148/337 (43%), Gaps = 42/337 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD-------- 52
           + V+ GG SSE  VSL S  +    + +  + ++ I +D++    +     D        
Sbjct: 4   LGVVFGGQSSEYSVSLHSVASFLRQIHNEKYDITMIGIDQNGQFYVYDGSIDDIEHDHWI 63

Query: 53  --------------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
                                       F VLHG  GEDG VQ +LEL+ I Y    +++
Sbjct: 64  PQATKAAWVHKGIMALDGKNTVKELDCVFPVLHGKNGEDGCVQGLLELMNIHYVGCDVMS 123

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-----QHLISPPYVIKPLKGGSSLGI 141
           SA+SMDK     +     +P    + +     +      Q  IS P+++KP   GSS G+
Sbjct: 124 SAISMDKEIMHILCDEANIPCADYVCLKANEENPSFEMIQEKISLPWIVKPCNAGSSYGV 183

Query: 142 IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK--SDF 199
             ++  +        +  ++   ++L+E+ ++G E+ C VMG+  +        +     
Sbjct: 184 HKVENKEEFEEACKDAFFYDGRGKILVEKAIEGFEIGCAVMGNEEVFTGSCDEIQISGGI 243

Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
           + +E KY    +  + PA+I  + + + + LA   ++A+ C G++R D    P  ++V  
Sbjct: 244 FDFEGKYEMKGAEIICPARIDEETFAKAKALAAKTYKAMNCCGMARVDMFVTPQ-KEVIL 302

Query: 260 LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            E+N  PG T  S +P M   AG  F +L+  +++ A
Sbjct: 303 NELNTIPGFTATSRYPSMMKEAGIEFGDLIDKLIDLA 339


>gi|269959078|ref|YP_003328867.1| D-alanine--D-alanine ligase [Anaplasma centrale str. Israel]
 gi|269848909|gb|ACZ49553.1| D-alanine--D-alanine ligase [Anaplasma centrale str. Israel]
          Length = 336

 Score =  272 bits (697), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 101/300 (33%), Positives = 163/300 (54%), Gaps = 5/300 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S EREVSL+ GK  A AL   G + + +D++R     L  + PDL +N LHG
Sbjct: 15  IAVLCGGSSPEREVSLAGGKRIADALGRLGHRAAVVDLNRESAHQLLAMAPDLVYNALHG 74

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT-MD 119
             GEDG    +L++L + YTHS + AS++ MDK+ +K V+ S G+      ++ +   + 
Sbjct: 75  GQGEDGCASGLLDILGLAYTHSRVAASSVGMDKVLTKHVLKSLGIDFPEFSVLTKEEVLS 134

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
           ++ ++  P+VIKP+ GGS++G+  I          + + +     ++L+E+Y+ G E+  
Sbjct: 135 AKEVMPYPFVIKPICGGSTIGVHAIFSRSEYLDLSVHADALE--GRMLVEEYIPGQEVHT 192

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
            V    ++   E    +   Y Y+ KY      HV PA +  D+Y      A   +Q +G
Sbjct: 193 AVFLGRAIGTMEFLF-EGRVYGYDAKYVEGLCRHVFPANLSDDVYSLTMEWAVKLYQCLG 251

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPE-MAAYAGYSFRELLLWMVEDASC 298
           CR +SR DF +D  ++ +  LEIN  PGMT  S  PE +    G  F +++ ++V+DA C
Sbjct: 252 CRTVSRVDFRYDKANKALKLLEINTHPGMTACSALPEILWLRCGLDFDQVVDFIVKDALC 311


>gi|227545759|ref|ZP_03975808.1| D-alanine--D-alanine ligase [Bifidobacterium longum subsp. infantis
           ATCC 55813]
 gi|227213875|gb|EEI81714.1| D-alanine--D-alanine ligase [Bifidobacterium longum subsp. infantis
           ATCC 55813]
          Length = 397

 Score =  272 bits (697), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 86/280 (30%), Positives = 142/280 (50%), Gaps = 25/280 (8%)

Query: 39  DRSVGLVLAHLK-PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSK 97
           D  +  VL  L   D    VLHG +GEDG VQ +LE++ +PY   G+ ASA  MDK  +K
Sbjct: 115 DPEMHHVLTSLGHVDAVLPVLHGPYGEDGTVQGLLEMMGVPYVGCGVFASAACMDKHYTK 174

Query: 98  QVVSSCGVPVCPSILVNRFTMDSQHL--------ISPPYVIKPLKGGSSLGIIVIKKDQS 149
            V+ + G+P  P + V+     +  +        ++ P  +KP + GSS G+  ++K   
Sbjct: 175 VVLDAAGIPTAPGVTVDARNFTAADVLAEIEDAGLTYPLFVKPSRAGSSFGVTKVEKADD 234

Query: 150 IP-----LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP--------- 195
                  L    +++  H  ++L+EQ +DG E+ C V+   + D  E + P         
Sbjct: 235 RETQQDRLAAAIATAGEHDWKVLVEQGIDGREIECAVLCPKAGDEPEASWPGEIVLDHQN 294

Query: 196 KSDFYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
              FY ++ KY   +++HV  PA +P+ + ++V+ +A  A +A+   G+SR D    P  
Sbjct: 295 DDQFYDFDSKYMDASASHVEVPANLPVSVLEDVRDVARRAFKAVDGAGLSRVDTFVTP-D 353

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             V   EIN  PG TP+S++P+     G S+ EL+  ++E
Sbjct: 354 GTVMVNEINTMPGFTPISMYPKAWDATGVSYTELITRLIE 393



 Score = 45.9 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 10/51 (19%), Positives = 21/51 (41%)

Query: 1  MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP 51
          + VL GG + E  +S  S      A++   F+   + + +    ++    P
Sbjct: 8  VVVLYGGRADEHSISCISTAGVLGAMDTERFEPIPVGITKDGKWIINGEDP 58


>gi|257057908|ref|YP_003135740.1| D-alanine--D-alanine ligase [Saccharomonospora viridis DSM 43017]
 gi|256587780|gb|ACU98913.1| D-alanine--D-alanine ligase [Saccharomonospora viridis DSM 43017]
          Length = 316

 Score =  272 bits (697), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 99/310 (31%), Positives = 158/310 (50%), Gaps = 18/310 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG+S ER+VSL SG+  + AL D G  V + D D S+   L   KPD A   LHG
Sbjct: 6   VAVLAGGLSHERDVSLRSGRRLSVALRDQGLTVQEWDTDASLLDRLKTEKPDAAVVALHG 65

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117
             GE+G +Q +LE+L +P+  +       + DK  +K +VS  G      + +   T   
Sbjct: 66  GEGENGSIQTVLEMLGVPFVGTSSRGCRRAWDKPIAKALVSKAGFSTPDWVALPHSTFRE 125

Query: 118 ------MDSQ-HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                 +D+    +  P ++KP +GGS+LG  V++    +P  ++    + +GD +L E+
Sbjct: 126 LGAQPVLDAMVERLGLPLILKPDQGGSALGAQVVRDAADLPAAMV--GCFAYGDTVLAER 183

Query: 171 YVDGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE 226
           ++DG+E+   V+    G  +L   EI VP+   Y Y  +Y++  +    PA++  ++ + 
Sbjct: 184 FIDGVEVAVTVVEYEDGPKALPAVEI-VPEGGVYDYTARYTAGLTDFFAPARLSEEVAEA 242

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           V  LA  AH  +G R ISR+D         V +LE+N  PG+T  S  P     AG S  
Sbjct: 243 VSDLAVSAHTLLGLRDISRTDA-VVASDGTVHFLEVNSSPGLTETSTVPMALEAAGTSLG 301

Query: 287 ELLLWMVEDA 296
            +   +V+ A
Sbjct: 302 AVFTDLVQRA 311


>gi|254966991|gb|ACT97530.1| putative D-alanyl-alanine synthetase A [uncultured organism]
          Length = 337

 Score =  272 bits (697), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 92/304 (30%), Positives = 147/304 (48%), Gaps = 33/304 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           +A++ GG SSE +VS+ S +   S ++   + +  +++ +     L              
Sbjct: 5   IAIVAGGDSSEHDVSMRSAEGIYSFIDKDKYTLYIVELTKEKWEALLPDGSRAQIDRNDF 64

Query: 47  ------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
                   +KPD A+  +HG  GE+G++Q   ELL IPY+   +L SA++  K    Q +
Sbjct: 65  SFSHDGQKVKPDFAYITIHGTPGENGILQGYFELLGIPYSTCDVLVSAMTFSKFTLNQYL 124

Query: 101 SSCGVPVCPSILVNRF----TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
              GV V  S+LVN+       D    I  P  IKP   GSS G+  +K  + I   L  
Sbjct: 125 KGFGVRVAESMLVNKHHGISNEDVIEKIGLPCFIKPNASGSSFGVTKVKTAEQIQPAL-- 182

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNST 212
             ++   D ++IE ++DGIEL  G            +TE+ V K++F+ Y  KY+    T
Sbjct: 183 EKAFAESDDVMIEAFMDGIELANGCYKTKDKSVVFPITEV-VSKNEFFDYNAKYN-GEVT 240

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
            + PA++  ++   VQ+L    +  +GC+GI R D++      K+  LEIN  PGMT  S
Sbjct: 241 EITPARLSPELTDRVQKLTSAVYDILGCKGIVRVDYIITE-GEKINMLEINTTPGMTATS 299

Query: 273 IFPE 276
             P+
Sbjct: 300 FIPQ 303


>gi|256820198|ref|YP_003141477.1| D-alanyl-alanine synthetase A [Capnocytophaga ochracea DSM 7271]
 gi|256581781|gb|ACU92916.1| D-alanine/D-alanine ligase [Capnocytophaga ochracea DSM 7271]
          Length = 325

 Score =  272 bits (697), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 90/323 (27%), Positives = 154/323 (47%), Gaps = 34/323 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           +A++MGG S+E  VSL S    A  L    +    + +DR   + +              
Sbjct: 5   IAIIMGGYSNEAPVSLKSAAVVAKNLNQDKYVPYPVRIDRDKWVYVDTQNNEHPIDKNDF 64

Query: 47  ------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
                   +  D  FN +HG  GEDG +QA   L+ +P T   + ASAL+ +K     V+
Sbjct: 65  SVTVNGRKITFDAVFNAIHGTPGEDGYLQAYFNLIGLPLTGCSMYASALTFNKRDMLSVL 124

Query: 101 SSCGVPVCPSILVNRF----TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
              G+   PS  +N+     T D    +  P  +K  K GSS G+  + ++  +P  +  
Sbjct: 125 KPFGILSAPSYYLNKGEDYNTADIVAKVGLPCFVKANKSGSSFGVYKVYEEAQLP--MYI 182

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGD----ASLDVTEIAVPKSDFYSYELKYSSLNST 212
             ++   D++LIE ++ G E++ GV+        L +TEI V ++DF+ Y+ KY+   S 
Sbjct: 183 DKAFEVDDEILIETFLKGTEISIGVINYRGKIKVLPMTEI-VSENDFFDYDAKYN-GKSQ 240

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
            + PA++  ++  ++  LA   ++ +   G SRS+F+   +    + LE+N  PG++  S
Sbjct: 241 EITPARLSAEMTAKINALAERVYRLLKMEGFSRSEFII--VGDTPYLLEMNTTPGLSEAS 298

Query: 273 IFPEMAAYAGYSFRELLLWMVED 295
           + P+ A  AG S  EL    +E 
Sbjct: 299 LLPQQAKVAGISLEELFESEIER 321


>gi|219684734|ref|ZP_03539677.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase) [Borrelia
           garinii PBr]
 gi|219672096|gb|EED29150.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase) [Borrelia
           garinii PBr]
          Length = 361

 Score =  272 bits (697), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 91/342 (26%), Positives = 161/342 (47%), Gaps = 50/342 (14%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDA-GFKVSQIDVDRSVGLVL--------------- 46
           ++ GG+S E E+S  S  +   AL D   + +  + +D+  G+                 
Sbjct: 7   LIFGGVSFEHEISCKSAYSIYLALLDLNKYNIYPVYIDKCTGIWYLLDSVSDPPKLIDID 66

Query: 47  -----------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
                             +L+ D+ F V+HG  GEDG +Q +L++++IP   +GI+ SA+
Sbjct: 67  VLPIVSLLPGIGIFSNNKNLEIDVVFPVVHGRTGEDGAIQGVLKVMDIPCIGAGIIGSAI 126

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPLKGGSSLG 140
           S +K   K ++ S  +P+ P I   +            + +  +  P ++KP   GSS+G
Sbjct: 127 SSNKYFCKLLLKSFNIPLVPFIGFRQHDYLLDKEEIKRNVREALGYPVIVKPAVLGSSIG 186

Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS---LDVTEIAVPKS 197
           I V   +  I        +  +   +LIE++++  E+ C V+G+         EI V   
Sbjct: 187 INVAYSESQIE--FFIEEALKYDLTILIEKFIEAREIECSVIGNEKIKIFSPGEIVVQDF 244

Query: 198 DFYSYELKYS--SLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
            FY Y+ KYS    NS     PA++  +    ++  AFL ++ +  RG++R DF  +  S
Sbjct: 245 IFYDYDAKYSVIPGNSIIFNIPAQLETNQLLSIKEYAFLVYKNLELRGMARVDFFVEKKS 304

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            K++  EIN  PG T +S+F +M ++ G  F++LL  ++  A
Sbjct: 305 GKIYLNEINTIPGFTDISMFSKMCSHDGLQFKDLLDNLINYA 346


>gi|153208936|ref|ZP_01947149.1| D-alanine--D-alanine ligase [Coxiella burnetii 'MSU Goat Q177']
 gi|212218748|ref|YP_002305535.1| D-alanyl-alanine synthetase A [Coxiella burnetii CbuK_Q154]
 gi|226696386|sp|B6J7Z1|DDL_COXB1 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|120575594|gb|EAX32218.1| D-alanine--D-alanine ligase [Coxiella burnetii 'MSU Goat Q177']
 gi|212013010|gb|ACJ20390.1| D-alanine--D-alanine ligase [Coxiella burnetii CbuK_Q154]
          Length = 372

 Score =  272 bits (697), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 87/348 (25%), Positives = 155/348 (44%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50
           ++VL GG S+E E+S+ S K   + L+ A + +S I +D      L              
Sbjct: 7   ISVLCGGQSTEHEISIQSAKNIVNTLDAAKYLISLIFIDHVGRWYLIDQPEMFLAHSPDH 66

Query: 51  --------------------------------PDLAFNVLHGNFGEDGLVQAILELLEIP 78
                                            D  F ++HG  GEDG +Q +LELL +P
Sbjct: 67  LVKEGSARPITIAFGDAAKPWQSLNGDGRRYSADCVFPMVHGTQGEDGALQGLLELLNLP 126

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-------QHLISPPYVIK 131
           Y  + + +SA+ M+K  +K V+ + G+PV     ++                 +    +K
Sbjct: 127 YVGANVQSSAVCMEKDLTKTVLRAGGIPVVDWHTLSPRDATEGVYQRLLDRWGTSELFVK 186

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
            +  GSS+  + +K +      + +   + + D+L++E  + G E+ C V+G+ +   + 
Sbjct: 187 AVSLGSSVATLPVKTETEFTKAVKEV--FRYDDRLMVEPRIRGREIECAVLGNGAPKASL 244

Query: 192 IA--VPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               +P  D+YSY+ KY     +T      +   + K++Q++A  A + + C G++R DF
Sbjct: 245 PGEIIPHHDYYSYDAKYLDPNGATTTTSVDLSESVTKQIQQIAIDAFKMVHCSGMARVDF 304

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              P + KV   EIN  PG T +S++P+M   +G     LL  ++E A
Sbjct: 305 FVTP-NNKVLVNEINTIPGFTNISMYPKMWEASGLPCPNLLDQLIELA 351


>gi|163786074|ref|ZP_02180522.1| D-alanylalanine synthetase [Flavobacteriales bacterium ALC-1]
 gi|159877934|gb|EDP71990.1| D-alanylalanine synthetase [Flavobacteriales bacterium ALC-1]
          Length = 317

 Score =  272 bits (697), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 92/320 (28%), Positives = 157/320 (49%), Gaps = 34/320 (10%)

Query: 5   MGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DRSVGL 44
           MGG SSE ++SL SG      L+   +   +I +                    D S+ +
Sbjct: 1   MGGYSSEYQISLKSGNVVYETLDKEKYNAFRIHIFKDKWVFVNDLDNEFPVDKNDFSIKV 60

Query: 45  VLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCG 104
               +  D  FN +HG+ GEDG +Q   EL+ IP T   +  +AL+ +K      +   G
Sbjct: 61  NGVKITFDCVFNAIHGSPGEDGFMQGYFELIGIPQTSCNMYQAALTFNKRDLLATLKPYG 120

Query: 105 VPVCPSILVNRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160
           +    S  +N     ++      +  P  +K  K GSS GI  + K + +   +  ++S+
Sbjct: 121 IKTAESYYLNLGDAINEGAIVAKVGLPCFVKANKAGSSFGISKVYKKEDLKAAI--NNSF 178

Query: 161 NHGDQLLIEQYVDGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216
              ++++IEQ++DG+E++ GV+        L +TEI V ++DF+ Y  KY    S  + P
Sbjct: 179 KEDNEIIIEQFLDGVEVSVGVISYRGETKVLPITEI-VSENDFFDYAAKYE-GKSQEITP 236

Query: 217 AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPE 276
           A+I  D  ++   +A   ++ +G  G SRS+F+F   + + + LE+N  PG+T  SI P+
Sbjct: 237 ARISKDYEQKTVTVAKQVYEILGMTGFSRSEFIF--KNDEPYLLEMNTVPGLTKESILPQ 294

Query: 277 MAAYAGYSFRELLLWMVEDA 296
            AA AG +  +L    +E+A
Sbjct: 295 QAAEAGINMSDLFDNAIEEA 314


>gi|330862508|emb|CBX72665.1| D-alanine--D-alanine ligase A [Yersinia enterocolitica W22703]
          Length = 301

 Score =  272 bits (696), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 77/254 (30%), Positives = 134/254 (52%), Gaps = 12/254 (4%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+ F ++HG  GEDG +Q +L +  IP+  SG+L SA+SMDK  +K+++   G+ + P I
Sbjct: 35  DVIFPIVHGTLGEDGSLQGLLRMANIPFVGSGVLGSAVSMDKDITKRLLRDAGLNIAPFI 94

Query: 112 LVNRFTMDS------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
            + R   D+         +  P  IKP   GSS+G+  ++        +  +  ++H  +
Sbjct: 95  TLTRANKDNYRFEQVTAKLGLPLFIKPANQGSSVGVSKVRNAYEYEQAVALAFDFDH--K 152

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYELKYSSL-NSTHVLPAKIPLD 222
           +L+E  + G E+ C VMG+ +   +     V   +FYSY+ KY +   +  ++PA I   
Sbjct: 153 VLVESAIVGREIECAVMGNDNPQASLCGEVVISDEFYSYDTKYINETGAKVIIPASIGSA 212

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAG 282
           +   ++ +A  A +A+ CRG++R D    P   +V   EIN  PG T +S++P++    G
Sbjct: 213 VSDNIRAVALAAFRALECRGMARVDVFLTP-DNRVIINEINTLPGFTNISMYPKLWRATG 271

Query: 283 YSFRELLLWMVEDA 296
               EL+  ++E A
Sbjct: 272 VGSTELITTLIELA 285


>gi|326334583|ref|ZP_08200794.1| D-alanine-D-alanine ligase [Capnocytophaga sp. oral taxon 338 str.
           F0234]
 gi|325693352|gb|EGD35280.1| D-alanine-D-alanine ligase [Capnocytophaga sp. oral taxon 338 str.
           F0234]
          Length = 327

 Score =  272 bits (696), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 90/323 (27%), Positives = 155/323 (47%), Gaps = 34/323 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40
           +AVLMGG S E EVSL S       L+ + +    I +                    D 
Sbjct: 4   IAVLMGGYSRESEVSLKSAATVVEHLDKSKYASYPILITKEKWVYMDSQNQEFVVDKNDF 63

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           S+ L    +  D AFN +HG  GEDG +QA   L+ IP T   + ASAL+ +K     V+
Sbjct: 64  SLILKGKKITFDCAFNAIHGTPGEDGYLQAYFALVGIPITGCSMYASALTFNKRDMLSVL 123

Query: 101 SSCGVPVCPSILVNRFT----MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
           +  G+P   +  +N+       +    +  P  +K  + GSS G+     ++ I  D   
Sbjct: 124 NPYGIPRAKAYYLNQGEHFSVREIIKTVGLPCFVKANRSGSSFGVYKAYNEKDI--DDAI 181

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNST 212
             ++   ++++IE+++ G E++ GV+        L +TEI V ++DF+ Y+ KY    S 
Sbjct: 182 EKAFEVDNEIIIEEFLKGTEVSVGVITYRGKKKVLPITEI-VSENDFFDYQAKY-QGRSK 239

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
            + PA++     ++V+ LA   +  +  +G SRS+++   +  + + LE+N  PG++  S
Sbjct: 240 EITPARLTAQEKEKVEALALKVYDLLQMKGFSRSEYIL--VGGEPYLLEMNTTPGLSNAS 297

Query: 273 IFPEMAAYAGYSFRELLLWMVED 295
           I P+ A  AG +   L    +E+
Sbjct: 298 ILPQQAKAAGITLANLFDNAIEE 320


>gi|325109113|ref|YP_004270181.1| D-alanine--D-alanine ligase [Planctomyces brasiliensis DSM 5305]
 gi|324969381|gb|ADY60159.1| D-alanine--D-alanine ligase [Planctomyces brasiliensis DSM 5305]
          Length = 312

 Score =  272 bits (696), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 90/299 (30%), Positives = 138/299 (46%), Gaps = 9/299 (3%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62
           +LMGG S+ERE+SL SGKA  +AL + G  V+  D   +        + D+ F  LHG  
Sbjct: 5   LLMGGASAEREISLLSGKAVQAALLNLGHHVTVHDPIDAPPAADVLQRHDVVFLALHGTG 64

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---- 118
           GEDG +Q++LE   +P+T S   AS ++  K  SK      G+    +            
Sbjct: 65  GEDGQIQSLLEQANVPFTGSNADASRIAFHKGLSKIRFQQAGLATPDAEPFRIDEAIEKI 124

Query: 119 -DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            +    +  P+ +KP   GSSLG+  I   + +P  +      +     LIE+ + G E 
Sbjct: 125 QNRAARLVSPWFVKPDAQGSSLGVSKIDSPEDLPSAVDSVRKLDKAG--LIEEAISGTEW 182

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           T G+    +     I     +F +Y  KY    + H +      +  K++  +A  A+QA
Sbjct: 183 TVGLFDSVTFPPVAIQ-AHREFNTYAAKYEQAAAKHTINRGAATEAEKQLMAVAREAYQA 241

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +G  G++R D + D      + LE+N  PGMT  S  P+ AA  G+S  EL   M   A
Sbjct: 242 VGATGLARVDLICDVQGN-PWILEVNTIPGMTETSTVPKAAAAFGWSLGELCERMCAAA 299


>gi|256841838|ref|ZP_05547344.1| D-alanyl-alanine synthetase A [Parabacteroides sp. D13]
 gi|256736732|gb|EEU50060.1| D-alanyl-alanine synthetase A [Parabacteroides sp. D13]
          Length = 330

 Score =  272 bits (696), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 83/327 (25%), Positives = 152/327 (46%), Gaps = 31/327 (9%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVS-------------------QID-VDR 40
           +A++ GG SSE  +SL S     S ++   + +                     ID  D 
Sbjct: 5   IAIVAGGDSSEIVISLKSADGIYSFIDKDKYNLYIAIVKRDEWAVILPSGEHTPIDKNDF 64

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           S          D A+  +HG  GEDG +Q   +++ +PY+  G+L SAL+ +K      +
Sbjct: 65  SFKENGVAKHFDFAYITIHGTPGEDGRLQGYFDMIGMPYSSCGMLVSALTFNKYVCNHYL 124

Query: 101 SSCGVPVCPSILVNRFTMDSQHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
              GV +  SI + +    +       +  P  +KP  GGSS G+  +K+  +I   + +
Sbjct: 125 KDFGVKIAASIHLFKGETITDEEVVTRLGLPIFVKPNDGGSSFGVTKVKEVSAIQPAIAK 184

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVM---GDASLDVTEIAVPKSDFYSYELKYSSLNSTH 213
             ++  G ++++E+++DG E+TCG     G   +      V  ++F+ ++ KY+      
Sbjct: 185 --AFGEGREVILERFIDGTEVTCGCYKVEGKEVVFPLTEVVTNNEFFDFDAKYN-GQVDE 241

Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273
           + PA+I  ++ + +QR     +  +G +G+ R D++  P   +   LEIN  PGMT  S 
Sbjct: 242 ITPARISTELTELIQRETSRIYDILGAKGLIRVDYII-PADGEPVLLEINTTPGMTATSF 300

Query: 274 FPEMAAYAGYSFRELLLWMVEDASCLR 300
            P+    AG   ++++  ++ED    R
Sbjct: 301 IPQQVRAAGLDIKDVMTDIIEDELKNR 327


>gi|332521353|ref|ZP_08397809.1| D-alanine/D-alanine ligase [Lacinutrix algicola 5H-3-7-4]
 gi|332043081|gb|EGI79279.1| D-alanine/D-alanine ligase [Lacinutrix algicola 5H-3-7-4]
          Length = 317

 Score =  272 bits (696), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 88/320 (27%), Positives = 152/320 (47%), Gaps = 34/320 (10%)

Query: 5   MGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DRSVGL 44
           MGG SSE ++SL SG    + L    +   +I +                    D SV +
Sbjct: 1   MGGYSSEYQISLKSGNVVYNTLNKEKYNAYRIHIFENKWVYVDANDKEYAIDKNDFSVLV 60

Query: 45  VLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCG 104
               +  D  FN +HG+ GEDG +Q+  +L+ +P T      +AL+ +K     V+   G
Sbjct: 61  NETKITFDCVFNAIHGSPGEDGFMQSYFKLINLPQTSCDAYQAALTFNKRDCLSVLKPYG 120

Query: 105 VPVCPSILVNRFTMDSQH----LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160
           +    S  +N   + ++      +  P  +K  K GSS GI  + + + +   +    ++
Sbjct: 121 ILTAESYYLNLGDIINEDQIINKVGLPCFVKANKAGSSFGISKVHEKEKLNAAIDI--AF 178

Query: 161 NHGDQLLIEQYVDGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216
              ++++IE ++DG E++ GV+        L +TEI V ++DF+ YE KY    S  + P
Sbjct: 179 KEDNEIIIESFLDGTEVSVGVITYKGETKVLPITEI-VSENDFFDYEAKYL-GKSQEITP 236

Query: 217 AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPE 276
           A+I  +   +V  +A   +  +  +G +RS+F+F     +   LE+N  PG+T  SI P+
Sbjct: 237 ARITKEQENKVTTVAKKIYNVLKMKGYTRSEFIF--KDGEPHLLEMNTIPGLTNESILPQ 294

Query: 277 MAAYAGYSFRELLLWMVEDA 296
            AA AG +   L    +E+A
Sbjct: 295 QAAEAGITMEALFDSAIEEA 314


>gi|291517448|emb|CBK71064.1| D-alanine--D-alanine ligase [Bifidobacterium longum subsp. longum
           F8]
          Length = 395

 Score =  272 bits (696), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 86/280 (30%), Positives = 142/280 (50%), Gaps = 25/280 (8%)

Query: 39  DRSVGLVLAHLK-PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSK 97
           D  +  VL  L   D    VLHG +GEDG VQ +LE++ +PY   G+ ASA  MDK  +K
Sbjct: 113 DPEMHHVLTSLGHVDAVLPVLHGPYGEDGTVQGLLEMMGVPYAGCGVFASAACMDKHYTK 172

Query: 98  QVVSSCGVPVCPSILVNRFTMDSQHL--------ISPPYVIKPLKGGSSLGIIVIKKDQS 149
            V+ + G+P  P + V+     +  +        ++ P  +KP + GSS G+  ++K   
Sbjct: 173 VVLDAAGIPTAPGVTVDARNFTAADVLAEIEDAGLTYPLFVKPSRAGSSFGVTKVEKADD 232

Query: 150 IP-----LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP--------- 195
                  L    +++  H  ++L+EQ +DG E+ C V+   + D  E + P         
Sbjct: 233 RETQQDRLAAAIATAGEHDWKVLVEQGIDGREIECAVLCPKAGDEPEASWPGEIVLDHQN 292

Query: 196 KSDFYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
              FY ++ KY   +++HV  PA +P+ + ++V+ +A  A +A+   G+SR D    P  
Sbjct: 293 DDQFYDFDSKYMDASASHVEVPANLPVSVLEDVRDVARRAFKAVDGAGLSRVDTFVTP-D 351

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             V   EIN  PG TP+S++P+     G S+ EL+  ++E
Sbjct: 352 GTVMVNEINTMPGFTPISMYPKAWDATGVSYTELITRLIE 391



 Score = 45.9 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 10/51 (19%), Positives = 21/51 (41%)

Query: 1  MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP 51
          + VL GG + E  +S  S      A++   F+   + + +    ++    P
Sbjct: 6  VVVLYGGRADEHSISCISTAGVLGAMDTERFEPIPVGITKDGKWIINGEDP 56


>gi|271970545|ref|YP_003344741.1| D-alanine--D-alanine ligase [Streptosporangium roseum DSM 43021]
 gi|270513720|gb|ACZ91998.1| D-alanine--D-alanine ligase [Streptosporangium roseum DSM 43021]
          Length = 318

 Score =  272 bits (696), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 101/311 (32%), Positives = 157/311 (50%), Gaps = 18/311 (5%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62
           VL GG+S EREVSL SG+  +  L  AG  V   D D S+   +    PD  F  LHG  
Sbjct: 9   VLAGGLSYEREVSLRSGRRVSEVLRTAGIVVETRDTDASLVPSILADPPDAVFVTLHGGA 68

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ- 121
           GEDG ++++LELL +PY  +G  A  ++ DK  +K VV S G+    S+ + + T     
Sbjct: 69  GEDGAIRSVLELLSVPYVGAGPDACRVAFDKPTAKTVVRSVGLRTPDSVTLPKETFHDLG 128

Query: 122 ---------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                      +  P  +KP +GGS+LG  +++  + +P  ++    + +GD  LIE+ +
Sbjct: 129 ASTVLTRIVERLGLPLFVKPSRGGSALGASIVRAAEDLPAAMV--GCFAYGDTALIERCI 186

Query: 173 DGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           +G+E+   V+    G  +L   EI VP    Y Y  +Y++ ++    PA++  +      
Sbjct: 187 EGVEVAVSVVDLGGGPMALPPVEI-VPDKGVYDYAARYTAGHTEFFAPARLSPEAAAACA 245

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
            +A  AH A+G R ISR+D + D       +LE+NV PGMT  S+ P     AG     L
Sbjct: 246 EMAVTAHTALGLRDISRTDLIVDG-DGLPHFLEVNVAPGMTETSLLPMAVEAAGDDLGTL 304

Query: 289 LLWMVEDASCL 299
              ++E A+  
Sbjct: 305 CRVLLEQAAAR 315


>gi|209364069|ref|YP_001424774.2| D-alanyl-alanine synthetase A [Coxiella burnetii Dugway 5J108-111]
 gi|215919165|ref|NP_820327.2| D-alanyl-alanine synthetase A [Coxiella burnetii RSA 493]
 gi|206584049|gb|AAO90841.2| D-alanine--D-alanine ligase [Coxiella burnetii RSA 493]
 gi|207082002|gb|ABS77778.2| D-alanine--D-alanine ligase [Coxiella burnetii Dugway 5J108-111]
          Length = 373

 Score =  272 bits (696), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 87/348 (25%), Positives = 155/348 (44%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50
           ++VL GG S+E E+S+ S K   + L+ A + +S I +D      L              
Sbjct: 8   ISVLCGGQSTEHEISIQSAKNIVNTLDAAKYLISVIFIDHVGRWYLIDQPEMFLAHSPDH 67

Query: 51  --------------------------------PDLAFNVLHGNFGEDGLVQAILELLEIP 78
                                            D  F ++HG  GEDG +Q +LELL +P
Sbjct: 68  LVKEGSARPITIAFGDAAKPWQSLNGDGRRYSADCVFPMVHGTQGEDGALQGLLELLNLP 127

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-------QHLISPPYVIK 131
           Y  + + +SA+ M+K  +K V+ + G+PV     ++                 +    +K
Sbjct: 128 YVGANVQSSAVCMEKDLTKTVLRAGGIPVVDWHTLSPRDATEGVYQRLLDRWGTSELFVK 187

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
            +  GSS+  + +K +      + +   + + D+L++E  + G E+ C V+G+ +   + 
Sbjct: 188 AVSLGSSVATLPVKTETEFTKAVKEV--FRYDDRLMVEPRIRGREIECAVLGNGAPKASL 245

Query: 192 IA--VPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               +P  D+YSY+ KY     +T      +   + K++Q++A  A + + C G++R DF
Sbjct: 246 PGEIIPHHDYYSYDAKYLDPNGATTTTSVDLSESVTKQIQQIAIDAFKMVHCSGMARVDF 305

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              P + KV   EIN  PG T +S++P+M   +G     LL  ++E A
Sbjct: 306 FVTP-NNKVLVNEINTIPGFTNISMYPKMWEASGLPCPNLLDQLIELA 352


>gi|149276235|ref|ZP_01882379.1| D-alanylalanine synthetase [Pedobacter sp. BAL39]
 gi|149232755|gb|EDM38130.1| D-alanylalanine synthetase [Pedobacter sp. BAL39]
          Length = 335

 Score =  272 bits (696), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 88/326 (26%), Positives = 154/326 (47%), Gaps = 36/326 (11%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI-----------------DVDRSVG 43
           +A+L GG + E  +S+ S    A  L+   F+V +I                 +VDR+  
Sbjct: 12  IALLTGGTTGEWVISVKSAATIAHNLDADKFEVYKIMLTQQGWFYEPADAVKIEVDRNDF 71

Query: 44  LVLAHLK---PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
            +  + K    D  F  +HG+ GEDG +Q   ++L +PYT    L S+++M+K  +K +V
Sbjct: 72  SLTINGKKIIFDGVFIAIHGSPGEDGKLQGYFDMLNLPYTTCNALTSSVTMNKGYTKAIV 131

Query: 101 SSCGVP---VCPSILVNR---FTMDS-QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153
              G+P   V  S  + +   + +D  ++ +  PY +KP  GGSS+G+  +     +   
Sbjct: 132 --NGIPNLHVAKSAQIFKNIPYDIDQLKNDLKIPYFVKPNNGGSSIGMSKVTHAADLQEA 189

Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSL 209
           +    ++   DQ+LIE+++ G E T GV+        L  TE+   K +F+ +E KY+  
Sbjct: 190 I--EKAFKEDDQILIEEFISGREFTVGVVKIDGEITVLPATEVETAK-EFFDFEAKYTPG 246

Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
            +T   PA I  +    V ++A   +  + C G+ R DF+        +++EIN  PG T
Sbjct: 247 VATETTPAPIRAETKARVGQIAKDVYLKLNCSGVVRIDFILTEDEGDFYFIEINTIPGQT 306

Query: 270 PVSIFPEMAAYAGYSFRELLLWMVED 295
             S  P+  A  G    +    ++ +
Sbjct: 307 ATSFIPQQVAAMGMKLNDFYTKLIRE 332


>gi|165924005|ref|ZP_02219837.1| D-alanine--D-alanine ligase [Coxiella burnetii RSA 334]
 gi|39930871|sp|Q83BZ9|DDL_COXBU RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|189083039|sp|A9KGD2|DDL_COXBN RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|165916550|gb|EDR35154.1| D-alanine--D-alanine ligase [Coxiella burnetii RSA 334]
          Length = 372

 Score =  271 bits (695), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 87/348 (25%), Positives = 155/348 (44%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50
           ++VL GG S+E E+S+ S K   + L+ A + +S I +D      L              
Sbjct: 7   ISVLCGGQSTEHEISIQSAKNIVNTLDAAKYLISVIFIDHVGRWYLIDQPEMFLAHSPDH 66

Query: 51  --------------------------------PDLAFNVLHGNFGEDGLVQAILELLEIP 78
                                            D  F ++HG  GEDG +Q +LELL +P
Sbjct: 67  LVKEGSARPITIAFGDAAKPWQSLNGDGRRYSADCVFPMVHGTQGEDGALQGLLELLNLP 126

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-------QHLISPPYVIK 131
           Y  + + +SA+ M+K  +K V+ + G+PV     ++                 +    +K
Sbjct: 127 YVGANVQSSAVCMEKDLTKTVLRAGGIPVVDWHTLSPRDATEGVYQRLLDRWGTSELFVK 186

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
            +  GSS+  + +K +      + +   + + D+L++E  + G E+ C V+G+ +   + 
Sbjct: 187 AVSLGSSVATLPVKTETEFTKAVKEV--FRYDDRLMVEPRIRGREIECAVLGNGAPKASL 244

Query: 192 IA--VPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               +P  D+YSY+ KY     +T      +   + K++Q++A  A + + C G++R DF
Sbjct: 245 PGEIIPHHDYYSYDAKYLDPNGATTTTSVDLSESVTKQIQQIAIDAFKMVHCSGMARVDF 304

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              P + KV   EIN  PG T +S++P+M   +G     LL  ++E A
Sbjct: 305 FVTP-NNKVLVNEINTIPGFTNISMYPKMWEASGLPCPNLLDQLIELA 351


>gi|255015879|ref|ZP_05288005.1| D-alanyl-alanine synthetase A [Bacteroides sp. 2_1_7]
          Length = 330

 Score =  271 bits (695), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 83/327 (25%), Positives = 152/327 (46%), Gaps = 31/327 (9%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVS-------------------QID-VDR 40
           +A++ GG SSE  +SL S     S ++   + +                     ID  D 
Sbjct: 5   IAIVAGGDSSEIVISLKSADGIYSFIDKDKYNLYIAIVKRDEWAVILPSGEHTPIDKNDF 64

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           S          D A+  +HG  GEDG +Q   +++ +PY+  G+L SAL+ +K      +
Sbjct: 65  SFKENGVTRHFDFAYITIHGTPGEDGRLQGYFDMIGMPYSSCGMLVSALTFNKYVCNHYL 124

Query: 101 SSCGVPVCPSILVNRFTMDSQHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
              GV +  SI + +    +       +  P  +KP  GGSS G+  +K+  +I   + +
Sbjct: 125 KDFGVKIAASIHLFKGETITDEEVVTRLGLPIFVKPNDGGSSFGVTKVKEVSAIQPAIAK 184

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVM---GDASLDVTEIAVPKSDFYSYELKYSSLNSTH 213
             ++  G ++++E+++DG E+TCG     G   +      V  ++F+ ++ KY+      
Sbjct: 185 --AFGEGREVILERFIDGTEVTCGCYKVEGKEVVFPLTEVVTNNEFFDFDAKYN-GQVDE 241

Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273
           + PA+I  ++ + +QR     +  +G +G+ R D++  P   +   LEIN  PGMT  S 
Sbjct: 242 ITPARISTELTELIQRETSRIYDILGAKGLIRVDYII-PADGEPVLLEINTTPGMTATSF 300

Query: 274 FPEMAAYAGYSFRELLLWMVEDASCLR 300
            P+    AG   ++++  ++ED    R
Sbjct: 301 IPQQVRAAGLDIKDVMTDIIEDELKNR 327


>gi|281425097|ref|ZP_06256010.1| D-alanine--D-alanine ligase [Prevotella oris F0302]
 gi|299142140|ref|ZP_07035273.1| D-alanine--D-alanine ligase [Prevotella oris C735]
 gi|281400941|gb|EFB31772.1| D-alanine--D-alanine ligase [Prevotella oris F0302]
 gi|298576229|gb|EFI48102.1| D-alanine--D-alanine ligase [Prevotella oris C735]
          Length = 331

 Score =  271 bits (695), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 89/326 (27%), Positives = 150/326 (46%), Gaps = 35/326 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40
           +A++ GG SSE +VSL S +   S  +   + V  +DV                    D 
Sbjct: 8   IAIVCGGDSSEHDVSLRSAQGLYSFFDKEKYNVYIVDVKGTDWHVNFSDGATAAIDKNDF 67

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           S       +  D A+  +HG  GE+G++Q   +L+ +PY+ SG+L  A++ DK      +
Sbjct: 68  SFKHNGKTVFFDYAYITIHGQPGENGVMQGYFDLIHLPYSTSGVLVEAMTFDKYVLNNYL 127

Query: 101 SSCGVPVCPSILVNR----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
              GV V  SIL+ R         +  +  P  +KP   GSS G+  +K    +   L  
Sbjct: 128 RGFGVRVADSILLRRGEDYDEEQIEKRLGMPCFVKPSADGSSFGVSKVKNADQLAPAL-- 185

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNST 212
             ++   ++++IE Y+DG+E++ G+         L  TE+ V K++F+ Y+ KY+     
Sbjct: 186 RVAFMESNEVMIEGYLDGVEISQGIYKTHDKEVVLPATEV-VTKNEFFDYDAKYN-GQVQ 243

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF--DPLSRKVF-WLEINVQPGMT 269
            + PA++  +   +V       +  +   GI R D++   D     V   LEIN  PGMT
Sbjct: 244 EITPARLSKETAAKVAAETSRIYDILHANGIIRIDYIISKDAEGNDVVNMLEINTTPGMT 303

Query: 270 PVSIFPEMAAYAGYSFRELLLWMVED 295
             S  P+    AG   +++L  +VE+
Sbjct: 304 ATSFIPQQVRAAGLDIKDVLSDIVEN 329


>gi|289178027|gb|ADC85273.1| D-alanine--D-alanine ligase [Bifidobacterium animalis subsp. lactis
           BB-12]
          Length = 394

 Score =  271 bits (695), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 94/374 (25%), Positives = 152/374 (40%), Gaps = 77/374 (20%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +AVL GG + E  +S  S  +   AL+   F+   I + ++    +    P         
Sbjct: 22  VAVLYGGKADEHSISCISAASFMRALDPELFEAVPIGITKTGTWFVDGQDPLGWNLAEGL 81

Query: 52  --------------------------------------DLAFNVLHGNFGEDGLVQAILE 73
                                                 D+    LHG FGEDG +Q + E
Sbjct: 82  PEAVETPDSREVVLTIGDGGDGFHARNADGSLDSLGHIDVVLPALHGPFGEDGTIQGLFE 141

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------------- 120
           ++ +PY   G+LASA  MDK  +K ++ + G+PV P I ++    D+             
Sbjct: 142 MMGVPYVGCGVLASAACMDKHYTKVLLRAAGIPVAPGITLDTRHYDASDEFATDGEEFLR 201

Query: 121 ---QHLISPPYVIKPLKGGSSLGIIVIKK-DQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
              +  +  P  +KP + GSS G+  +++   +  L      +  H  ++L+EQ +D  E
Sbjct: 202 QVNEAGLQYPLFVKPSRAGSSFGVTKVEQIGDAAALAAAVFEASRHDWRVLVEQGIDARE 261

Query: 177 LTCGVMGDASLDVTEIAVP-----------KSDFYSYELKYSSLNSTHV-LPAKIPLDIY 224
           + C V+     D T  A+P              FY ++ KY    ++H  +PAKI  D+ 
Sbjct: 262 IECAVVRIHPTDPTRAALPGEVVLDRRSEGDDQFYDFDSKYMDSQASHTEIPAKIGDDLI 321

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
             V+  A  A  A+   G+SR D         V   EIN  PG T +S+FP+     G  
Sbjct: 322 ARVRETAVRAFDAVDGMGLSRVDTFVTA-DGDVLVNEINTLPGCTSISMFPQAWEAMGIP 380

Query: 285 FRELLLWMVEDASC 298
           FR ++  ++E A  
Sbjct: 381 FRTVVTDLIEGALA 394


>gi|46190210|ref|ZP_00121771.2| COG1181: D-alanine-D-alanine ligase and related ATP-grasp enzymes
           [Bifidobacterium longum DJO10A]
 gi|189439975|ref|YP_001955056.1| D-alanyl-alanine synthetase A [Bifidobacterium longum DJO10A]
 gi|259645162|sp|B3DTT9|DDL_BIFLD RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|189428410|gb|ACD98558.1| D-alanine-D-alanine ligase [Bifidobacterium longum DJO10A]
          Length = 395

 Score =  271 bits (695), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 86/280 (30%), Positives = 142/280 (50%), Gaps = 25/280 (8%)

Query: 39  DRSVGLVLAHLK-PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSK 97
           D  +  VL  L   D    VLHG +GEDG VQ +LE++ +PY   G+ ASA  MDK  +K
Sbjct: 113 DPEMHHVLTSLGHVDAVLPVLHGPYGEDGTVQGLLEMMGVPYVGCGVFASAACMDKHYTK 172

Query: 98  QVVSSCGVPVCPSILVNRFTMDSQHL--------ISPPYVIKPLKGGSSLGIIVIKKDQS 149
            V+ + G+P  P + V+     +  +        ++ P  +KP + GSS G+  ++K   
Sbjct: 173 VVLDAAGIPTAPGVTVDARNFTAADVLAEIEDAGLTYPLFVKPSRAGSSFGVTKVEKADD 232

Query: 150 IP-----LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP--------- 195
                  L    +++  H  ++L+EQ +DG E+ C V+   + D  E + P         
Sbjct: 233 RETQQDRLAAAIATAGEHDWKVLVEQGIDGREIECAVLCPKAGDEPEASWPGEIVLDHQN 292

Query: 196 KSDFYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
              FY ++ KY   +++HV  PA +P+ + ++V+ +A  A +A+   G+SR D    P  
Sbjct: 293 DDQFYDFDSKYMDASASHVEVPANLPVSVLEDVRDVARRAFKAVDGVGLSRVDTFVTP-D 351

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             V   EIN  PG TP+S++P+     G S+ EL+  ++E
Sbjct: 352 GTVMVNEINTMPGFTPISMYPKAWDATGVSYTELITRLIE 391



 Score = 45.9 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 10/51 (19%), Positives = 21/51 (41%)

Query: 1  MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP 51
          + VL GG + E  +S  S      A++   F+   + + +    ++    P
Sbjct: 6  VVVLYGGRADEHSISCISTAGVLGAMDTERFEPIPVGITKDGKWIINGEDP 56


>gi|224534249|ref|ZP_03674827.1| D-alanine--D-alanine ligase [Borrelia spielmanii A14S]
 gi|224514351|gb|EEF84667.1| D-alanine--D-alanine ligase [Borrelia spielmanii A14S]
          Length = 361

 Score =  271 bits (695), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 85/342 (24%), Positives = 158/342 (46%), Gaps = 50/342 (14%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDA-GFKVSQIDVDR--------------------- 40
           ++ GG+S E E+S  S  +   AL D   + +  + +D+                     
Sbjct: 7   LIFGGVSFEHEISCKSAYSIYLALLDLNKYNIYPVYIDKCSGIWYLLDSVSDPPNPINTD 66

Query: 41  -----------SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
                       +     +L  D+ F V+HG  GEDG +Q +L++++IP   +GI+ SA+
Sbjct: 67  VLPIVSLLPGLGIFSNNKNLDIDVVFPVVHGRTGEDGAIQGVLKVMDIPCVGAGIMGSAI 126

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPLKGGSSLG 140
           S +K   K ++ S  +P+ P I   +            + +  +  P ++KP   GSS+G
Sbjct: 127 SSNKYFCKLLLKSFNIPIVPFIGFRQHDYFLDKEEVKKNVKESLGYPVIVKPAVLGSSIG 186

Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS---LDVTEIAVPKS 197
           I V   +  I        +  +   ++IE++++  E+ C ++G+         E+ V   
Sbjct: 187 INVAYSENQIES--FIEEALKYDLTIVIEKFIEAREIECSIIGNEKMKIFSPGEVVVQDF 244

Query: 198 DFYSYELKYS--SLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
            FY Y+ KYS    NS     PA +  +    ++  AFL ++ +  RG++R DF  +  S
Sbjct: 245 IFYDYDAKYSVIPGNSIIFNIPAHLETNQLLSIKEYAFLVYKNLELRGMARVDFFVEKKS 304

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             ++  EIN  PG T +S+F +M ++ G  F++L+  +++ A
Sbjct: 305 GVIYLNEINTIPGFTDISMFAKMCSHDGLQFKDLVDNLIDYA 346


>gi|183221247|ref|YP_001839243.1| D-alanyl-alanine synthetase A [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
 gi|189911338|ref|YP_001962893.1| D-alanyl-alanine synthetase A [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|190359161|sp|B0S9U5|DDL_LEPBA RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|229485962|sp|B0SS77|DDL_LEPBP RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|167776014|gb|ABZ94315.1| D-alanine--D-alanine ligase [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167779669|gb|ABZ97967.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetase B;
           D-Ala-D-Ala ligase B) [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
          Length = 349

 Score =  271 bits (695), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 97/345 (28%), Positives = 162/345 (46%), Gaps = 56/345 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD--------------------- 39
           +A+L GGIS E  +S+ S     + ++   + V  + ++                     
Sbjct: 6   IALLFGGISGEHIISVRSSAFIFATIDREKYDVCPVYINPNGKFWIPTVSEPIYPDPSGK 65

Query: 40  ----------RSVGLVLAHLKPDL-------AFNVLHGNFGEDGLVQAILELLEIPYTHS 82
                     ++  +V      D+       AF  LHG  GEDG +Q  L+ L IP+T S
Sbjct: 66  TEIEFLQEFNKANAIVSPSEPADISQMGFLSAFLGLHGGAGEDGRIQGFLDTLGIPHTGS 125

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI-----SPPYVIKPLKGGS 137
           G+LAS+L+MDK R+  +  + G+PV P + + +   D +  +     S P  IKP  GGS
Sbjct: 126 GVLASSLAMDKYRANILFEAMGIPVAPFLELEKGKTDPRKTLLNLSFSYPVFIKPTLGGS 185

Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS--------LDV 189
           S+   + K  +      L    +   D++L+++ V G E++ GV+            L  
Sbjct: 186 SVNTGMAKTAEEAMT--LVDKIFVTDDRVLVQKLVSGTEVSIGVLEKPEGKKRNPFPLVP 243

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
           TEI  PKS+F+ +E KY+   S  + PA +  ++ K +Q      H+ +GC+G SR+DF+
Sbjct: 244 TEIR-PKSEFFDFEAKYTKGASEEITPAPVGDEVTKTLQEYTLRCHEILGCKGYSRTDFI 302

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
                   + LE N  PGMT  S+ P+ A   G + +++  W++E
Sbjct: 303 I--SDGVPYVLETNTLPGMTGTSLIPQQAKALGINMKDVFTWLLE 345


>gi|148985012|ref|ZP_01818255.1| D-alanine-D-alanine ligase and related ATP-grasp enzyme
           [Streptococcus pneumoniae SP3-BS71]
 gi|147922710|gb|EDK73827.1| D-alanine-D-alanine ligase and related ATP-grasp enzyme
           [Streptococcus pneumoniae SP3-BS71]
 gi|301800019|emb|CBW32612.1| D-Ala D-Ala ligase A [Streptococcus pneumoniae OXC141]
          Length = 321

 Score =  271 bits (695), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 103/323 (31%), Positives = 165/323 (51%), Gaps = 33/323 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           + VL GG+S EREVS +S K  + +L   G+ V  ID+ +     +  +           
Sbjct: 7   IVVLYGGLSEEREVSENSAKEISKSLLTLGYDVISIDLSQDCSYEIGEIEKSERGLNKQK 66

Query: 50  ------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSK 97
                       K D+ F   HG  GE+G +QAI ++ +I YT +  L++A+SMDK  SK
Sbjct: 67  VEIGSGIIDVCRKVDIVFLATHGGIGENGKLQAIFDVEKIDYTGNSFLSTAISMDKKLSK 126

Query: 98  QVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
            V SS G+    +++V+R   +       P VIKP++ GSS GI + +  +   +   + 
Sbjct: 127 IVASSVGIKCASNLMVDRIQAND-----FPIVIKPIRSGSSKGIKIFQNKKQFDIYYKEH 181

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
                   + +E+Y+ G E + G++G+  L V EI V K+ FY Y  KY+   +  V+PA
Sbjct: 182 PEL---GSVFVEKYIKGREFSVGILGETVLPVIEIKV-KNGFYDYNNKYTVGAAEEVVPA 237

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
           KI   +   +Q+ A+  H+A+G    SR+DF+ D     V+++E N  PGMT  S+ P+ 
Sbjct: 238 KISEKLTHTLQKSAYKIHKALGFNVYSRTDFIVDEK-GDVYFIESNSLPGMTKTSLLPQE 296

Query: 278 AAYAGYSFRELLLWMVEDASCLR 300
           A  AG  F  L   ++E +  +R
Sbjct: 297 AKAAGIDFPNLCERIIELSREIR 319


>gi|154492072|ref|ZP_02031698.1| hypothetical protein PARMER_01703 [Parabacteroides merdae ATCC
           43184]
 gi|154087858|gb|EDN86903.1| hypothetical protein PARMER_01703 [Parabacteroides merdae ATCC
           43184]
          Length = 326

 Score =  271 bits (695), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 84/322 (26%), Positives = 152/322 (47%), Gaps = 31/322 (9%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVS-------------------QID-VDR 40
           +A++ GG SSE  +SL S +   S L+   + V                     ID  D 
Sbjct: 6   IAIVAGGDSSEIVISLKSAEGIFSFLDKDKYNVYIAIVKRDEWAVKLPGGEHTPIDKNDF 65

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           S          D A+  +HG  GEDG +Q   +++ +PY+  G+  SAL+ +K      +
Sbjct: 66  SFRENGEIRHFDFAYITIHGTPGEDGRLQGYFDMIGMPYSSCGMFVSALTFNKFACNHYL 125

Query: 101 SSCGVPVCPSILVNRF----TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
              GV +  SI + +       +    +  P  +KP  GGSS G+  +K+  +I   + +
Sbjct: 126 KGFGVDIAHSIHLFKGQTVTDEEVVSRLGLPVFVKPNDGGSSFGVTKVKEASAIQPAIDK 185

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI---AVPKSDFYSYELKYSSLNSTH 213
             +++ G +++IE ++DG E+TCG    A  +V       V  ++F+ ++ KY+      
Sbjct: 186 --AFSEGREVVIESFIDGTEVTCGCYKTADKEVVFPLTEVVTDNEFFDFDAKYN-GQVQE 242

Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273
           + PA+I  +  ++VQR     +  +G +G+ R D++  P   +   LE+N  PGMT  S 
Sbjct: 243 ITPARISAEQTEKVQRETSRIYDILGAKGLIRVDYII-PADGEPKLLEVNTTPGMTATSF 301

Query: 274 FPEMAAYAGYSFRELLLWMVED 295
            P+    AG   ++++  ++E+
Sbjct: 302 IPQQVRAAGLEMKDVMTDIIEN 323


>gi|296453460|ref|YP_003660603.1| D-alanine--D-alanine ligase [Bifidobacterium longum subsp. longum
           JDM301]
 gi|296182891|gb|ADG99772.1| D-alanine--D-alanine ligase [Bifidobacterium longum subsp. longum
           JDM301]
          Length = 395

 Score =  271 bits (695), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 87/280 (31%), Positives = 142/280 (50%), Gaps = 25/280 (8%)

Query: 39  DRSVGLVLAHLK-PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSK 97
           D  +  VL  L   D    VLHG +GEDG VQ +LE++ +PY   G+ ASA  MDK  +K
Sbjct: 113 DPEMHHVLTSLGHVDAVLPVLHGPYGEDGTVQGLLEMMGVPYVGCGVFASAACMDKHYTK 172

Query: 98  QVVSSCGVPVCPSILVNRFTMDSQHL--------ISPPYVIKPLKGGSSLGIIVIKKDQS 149
            V+ + G+P  P + V+     +  +        ++ P  IKP + GSS G+  ++K   
Sbjct: 173 VVLGAAGIPTAPGVTVDARNFTAADVLAKIEDAGLTYPLFIKPSRAGSSFGVTKVEKADD 232

Query: 150 IP-----LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP--------- 195
                  L    +++  H  ++L+EQ +DG E+ C V+   + D  E + P         
Sbjct: 233 RETQQDRLAAAIATAGEHDWKVLVEQGIDGREIECAVLCPKAGDEPEASWPGEIVLDHQN 292

Query: 196 KSDFYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
              FY ++ KY   +++HV  PA +P+ + ++V+ +A  A +A+   G+SR D    P  
Sbjct: 293 DDQFYDFDSKYMDASASHVEVPANLPVSVLEDVRDVARRAFKAVDGAGLSRVDTFVTP-D 351

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             V   EIN  PG TP+S++P+     G S+ EL+  ++E
Sbjct: 352 GTVMVNEINTMPGFTPISMYPKAWDATGVSYTELITRLIE 391


>gi|269123840|ref|YP_003306417.1| D-alanine/D-alanine ligase [Streptobacillus moniliformis DSM 12112]
 gi|268315166|gb|ACZ01540.1| D-alanine/D-alanine ligase [Streptobacillus moniliformis DSM 12112]
          Length = 299

 Score =  271 bits (695), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 89/299 (29%), Positives = 157/299 (52%), Gaps = 7/299 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-DRSVGLVLAHLKPDLAFNVLH 59
           + V+ GG+S+EREVS+++GK   + L+ + ++V +I++  +     +  L  D A+  LH
Sbjct: 3   IGVIYGGVSTEREVSINTGKEIIANLDKSKYEVVEIEISKKEDIFKVVDLNLDFAYIALH 62

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G FGE G VQAILE   I Y+ SGIL+SA+ MDK  +K +  + GV +     + +    
Sbjct: 63  GEFGESGDVQAILETAGIKYSGSGILSSAICMDKDITKVLAKNSGVRIINGRCIKKGENI 122

Query: 120 --SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
             S   +    ++KP +GGSS+G+     D+ +   L +       +++LIE+   GIE+
Sbjct: 123 KFSDLNLGEKIILKPNRGGSSIGVYFATNDEELEYGLNEIFKLG-ENEVLIEEMKSGIEI 181

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           +  ++         I   K  F+ Y  KY +  +   +       +  E+      A+ A
Sbjct: 182 SVPIIAGKVFPTLLIEPLKDTFFDYTSKYENGGAKEYVY-FFEESLQNEINDFTIKAYNA 240

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           + C+G +R D++   +  K ++LE+N  PGMT  S+ P+   Y GYS+ E L  +++++
Sbjct: 241 VKCKGFARIDYIL--VDNKAYFLEVNTLPGMTKNSLLPKSTLYMGYSYSETLDLLIKES 297


>gi|325285481|ref|YP_004261271.1| D-alanine--D-alanine ligase [Cellulophaga lytica DSM 7489]
 gi|324320935|gb|ADY28400.1| D-alanine--D-alanine ligase [Cellulophaga lytica DSM 7489]
          Length = 324

 Score =  271 bits (695), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 94/324 (29%), Positives = 158/324 (48%), Gaps = 34/324 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40
           +A++MGG S+E ++SL SG      L    F + +I +                    D 
Sbjct: 5   IAIIMGGYSNEYKISLKSGNVAYKHLNSNKFNLYRIHILKDKWVYVDANDAESPVDKSDF 64

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           S+      +K D  FN +HG  GEDG +QA   L+ I  T      +AL+ +K      +
Sbjct: 65  SIIENGHKIKFDCVFNAIHGTPGEDGYLQAYFNLIGITQTACDFYQAALTFNKRDLLSTL 124

Query: 101 SSCGVPVCPSILVNRFTMDSQHLI----SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
              G+    S  +N+  + ++  I      P  +K  K GSS GI  + K + +P  +  
Sbjct: 125 KPYGIKAAASYYLNKGDVVNEDEIINTVGLPCFVKANKAGSSFGISKVHKKEDLPKAI-- 182

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNST 212
            +++   D+++IE ++DG E++ GV+        L +TEI   ++DF+ YE KY    S 
Sbjct: 183 ENAYLADDEIIIEAFLDGTEVSVGVIMYNGEPKVLPITEITT-ENDFFDYEAKYE-GKSQ 240

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
            + PA+I  +  ++V  +A   ++ +  +G SRS+F+F  +  + F LE+N  PG+T  S
Sbjct: 241 EITPARITKEQEEKVSNIALRVYKILKMKGYSRSEFIF--VDNEPFMLEMNTTPGLTEES 298

Query: 273 IFPEMAAYAGYSFRELLLWMVEDA 296
           I P+ AA AG S  +L    + +A
Sbjct: 299 ILPQQAAVAGISLSQLFESAITEA 322


>gi|213691237|ref|YP_002321823.1| D-alanine--D-alanine ligase [Bifidobacterium longum subsp. infantis
           ATCC 15697]
 gi|259645163|sp|B7GU04|DDL_BIFLI RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|213522698|gb|ACJ51445.1| D-alanine--D-alanine ligase [Bifidobacterium longum subsp. infantis
           ATCC 15697]
 gi|320457299|dbj|BAJ67920.1| D-alanine-D-alanine ligase [Bifidobacterium longum subsp. infantis
           ATCC 15697]
          Length = 395

 Score =  271 bits (694), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 86/281 (30%), Positives = 141/281 (50%), Gaps = 25/281 (8%)

Query: 38  VDRSVGLVLAHLK-PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRS 96
            D  +   L  L   D    VLHG +GEDG VQ +LE++ +PY   G+ ASA  MDK  +
Sbjct: 112 PDPEMHHALTSLGHVDAVLPVLHGPYGEDGTVQGLLEMMGVPYVGCGVFASAACMDKHYT 171

Query: 97  KQVVSSCGVPVCPSILVNRFTMDSQHL--------ISPPYVIKPLKGGSSLGIIVIKKDQ 148
           K V+ + G+P  P + V+     +  +        ++ P  IKP + GSS G+  ++K  
Sbjct: 172 KVVLGAAGIPTAPGVTVDARNFTAADVLAKIEDAGLTYPLFIKPSRAGSSFGVTKVEKAD 231

Query: 149 SIP-----LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP-------- 195
                   L    +++  H  ++L+EQ +DG E+ C V+   + D  E + P        
Sbjct: 232 DRETQQDRLAAAIATAGEHDWKVLVEQGIDGREIECAVLCPKAGDEPEASWPGEIVLDHQ 291

Query: 196 -KSDFYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
               FY ++ KY   +++HV  PA +P+ + ++V+ +A  A +A+   G+SR D    P 
Sbjct: 292 NDDQFYDFDSKYMDASASHVEVPANLPVSVLEDVRDVARRAFKAVDGAGLSRVDTFVTP- 350

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
              V   EIN  PG TP+S++P+     G S+ EL+  ++E
Sbjct: 351 DGTVMVNEINTMPGFTPISMYPKAWDATGVSYTELITRLIE 391



 Score = 46.3 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 10/51 (19%), Positives = 21/51 (41%)

Query: 1  MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP 51
          + VL GG + E  +S  S      A++   F+   + + +    ++    P
Sbjct: 6  VVVLYGGRADEHSISCISTAGVLGAMDTERFEPIPVGITKDGKWIINGEDP 56


>gi|254966989|gb|ACT97529.1| putative D-alanyl-alanine synthetase A [uncultured organism]
          Length = 331

 Score =  271 bits (694), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 89/324 (27%), Positives = 152/324 (46%), Gaps = 35/324 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40
           +A++ GG SSE +VSL SG+   S  +   + +  +DV                    D 
Sbjct: 8   IAIVCGGDSSEHDVSLRSGQGLYSFFDKERYNIYLVDVKGTDWHVALDNGETIEIDKNDF 67

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           S  +   H+  D A+  +HG  GE+G++Q   +L+ +PY+ SG+L  A++ DK      +
Sbjct: 68  SFVMNGKHVYFDYAYITIHGQPGENGVMQGYFDLIHLPYSTSGVLVEAMTFDKYVLNNYL 127

Query: 101 SSCGVPVCPSILVNR----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
              G+ V  SIL+ R       +    I  P  +KP   GSS G+  +K    +   L  
Sbjct: 128 RGFGINVADSILLRRGEAYDEEEIAKRIGMPCFVKPAADGSSFGVSKVKNADQLAPAL-- 185

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDAS----LDVTEIAVPKSDFYSYELKYSSLNST 212
             ++   ++++IE ++DG E++ G+   A     L  TE+ V  ++F+ Y+ KY+     
Sbjct: 186 RVAFMESNEVMIEGFLDGTEISQGIYKTAEKTVVLPATEV-VTNNEFFDYDAKYN-GQVQ 243

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL---SRKVFWLEINVQPGMT 269
            + PA++  +  +EV +     +  +   GI R D++         KV  LEIN  PGMT
Sbjct: 244 EITPARLSPETAEEVAKTTSRIYDILHANGIIRIDYIISKDKDGKDKVNMLEINTTPGMT 303

Query: 270 PVSIFPEMAAYAGYSFRELLLWMV 293
             S  P+    AG   +++L  +V
Sbjct: 304 VTSFIPQQVRAAGLDIKDVLSEIV 327


>gi|260890294|ref|ZP_05901557.1| D-alanine--D-alanine ligase [Leptotrichia hofstadii F0254]
 gi|260859914|gb|EEX74414.1| D-alanine--D-alanine ligase [Leptotrichia hofstadii F0254]
          Length = 323

 Score =  271 bits (694), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 86/302 (28%), Positives = 151/302 (50%), Gaps = 10/302 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS--VGLVLAHLKPDLAFNVL 58
           + V+ GG+S+EREVSL +G    + L    ++V  I +D    V   +  L  D  +  L
Sbjct: 21  VGVIRGGVSTEREVSLKTGSEIVANLNRDKYEVFDIVIDSEMEVFEKVKDLNLDFVYIAL 80

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT- 117
           HG FGEDG +QAIL+ L + Y+  G+++SA+ MDK  SK++V+  GV +     V     
Sbjct: 81  HGVFGEDGRIQAILQSLGVAYSGPGVMSSAVCMDKEFSKRIVAGYGVRIAKWKSVRVGET 140

Query: 118 ---MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
                 +  +    V+KP  GGSS+G+  ++  + +   L     +    + LIE+ + G
Sbjct: 141 VDFETIKKELGNRVVVKPNNGGSSIGVSFVENQEELEKGLELV--FGMDKEALIEEVLHG 198

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
           +E++  V+         I     D++ YE KY+   +   +  + P  +  E+ + A  +
Sbjct: 199 VEISVPVIDGEVFPTLRIEALAGDYFDYESKYAKGGANEYV-FEFPEKVQAEINKFAKDS 257

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           +  + C G +R DF+        +++E+N  PGMT  S+ P+  A  GY + + L  ++E
Sbjct: 258 YYGLKCEGFARIDFMVVNEE-TPYFMEVNTSPGMTSASLLPKSTASKGYDYSQTLDLLIE 316

Query: 295 DA 296
            +
Sbjct: 317 SS 318


>gi|226320941|ref|ZP_03796489.1| D-alanine--D-alanine ligase [Borrelia burgdorferi 29805]
 gi|226233643|gb|EEH32376.1| D-alanine--D-alanine ligase [Borrelia burgdorferi 29805]
          Length = 361

 Score =  271 bits (694), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 87/342 (25%), Positives = 161/342 (47%), Gaps = 50/342 (14%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDA-GFKVSQIDVDR--------------------- 40
           ++ GG+S E E+S  S  +   AL D   + +  + +D+                     
Sbjct: 7   LIFGGVSFEHEISCKSAYSIYLALLDLNKYNIYPVYIDKCTGVWYLLDSVSNPPKPINTD 66

Query: 41  -----------SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
                       +     +LK D+ F V+HG  GEDG +Q +L++++IP   +GI+ SA+
Sbjct: 67  VLPIVSLLPGFGIFSNNKNLKIDVVFPVVHGRTGEDGAIQGVLKVMDIPCVGAGIIGSAI 126

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPLKGGSSLG 140
           S +K   K ++ S  +P+ P I   +            + +  +  P ++KP   GSS+G
Sbjct: 127 SSNKYFCKLLLKSFDIPLVPFIGFRQHDYFLDKEEIKRNVKEALGYPVIVKPAVLGSSIG 186

Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS---LDVTEIAVPKS 197
           I V   +  I   + ++    +   ++IE++++  E+ C ++G+         E+ V   
Sbjct: 187 INVAYSENQIESFIKEAL--KYDLTIVIEKFIEAREIECSIIGNEKMKIFSPGEVVVQDF 244

Query: 198 DFYSYELKYS--SLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
            FY Y+ KYS    NS     PA +  +    ++  AFLA++ +  RG++R DF  +  S
Sbjct: 245 IFYDYDAKYSVIPGNSIIFNIPAHLETNQLLSIKEYAFLAYKNLELRGMARVDFFVEKKS 304

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             ++  EIN  PG T +S+F +M +  G  F++L+  +++ A
Sbjct: 305 GTIYLNEINTIPGFTDISMFAKMCSNDGLQFKDLVDNLIDYA 346


>gi|116073344|ref|ZP_01470606.1| D-alanine--D-alanine ligase [Synechococcus sp. RS9916]
 gi|116068649|gb|EAU74401.1| D-alanine--D-alanine ligase [Synechococcus sp. RS9916]
          Length = 353

 Score =  271 bits (694), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 93/346 (26%), Positives = 159/346 (45%), Gaps = 52/346 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALE----DAGFKVSQIDVD--------RSVGLVLAH 48
           + ++ GG S E  VS+ S     +ALE       F VS   +D             VLA 
Sbjct: 8   IGLVFGGASGEHAVSIRSANTVIAALEQGQNRERFSVSAFYIDCQGRWWAEEVARAVLAS 67

Query: 49  LKP-------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
            +P                         ++ + VLHG  GEDG VQ +  L+  P+  +G
Sbjct: 68  GQPAAPEDLPQPLPSPGFLNLPAGADAVEVWYPVLHGPNGEDGTVQGLFTLMGKPFVGAG 127

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-----------QHLISPPYVIKP 132
           +L S+++MDK+  K   ++ G+   P + +N   +             +  +  P  +KP
Sbjct: 128 VLGSSVAMDKLAMKAAFAAAGLAQVPYVGLNAADLQEPERRDAVVARIEQELGYPCFVKP 187

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192
              GSS+GI   +    +   L +++S     ++++EQ VD  EL C V+G   L  + +
Sbjct: 188 ANLGSSVGITKARDRSQLLSGLDEAASL--DPRIVVEQGVDARELECAVLGKRQLKASVV 245

Query: 193 AVP--KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
                 +D+Y Y  KYS   ST ++PA IP  +  +V+ +A  + +A+   G++R DF +
Sbjct: 246 GEIRFDADWYDYTTKYSDGLSTTLIPAPIPESLQDQVRTMALASCRALCVEGMARVDFFY 305

Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           D  +  ++  EIN  PG T +S++P +   +G    +L+  +VE A
Sbjct: 306 DDRTGDLWINEINTLPGFTSLSMYPMLWNASGIGLEQLVAQLVESA 351


>gi|160934064|ref|ZP_02081451.1| hypothetical protein CLOLEP_02927 [Clostridium leptum DSM 753]
 gi|156866737|gb|EDO60109.1| hypothetical protein CLOLEP_02927 [Clostridium leptum DSM 753]
          Length = 342

 Score =  271 bits (694), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 76/335 (22%), Positives = 140/335 (41%), Gaps = 58/335 (17%)

Query: 17  SSGKACASALEDAGFKVSQIDVDRSVGLVL------------------------------ 46
            S      A++ + ++V+ + + +     L                              
Sbjct: 1   MSATTVLRAIDKSRYEVTPVGIKKDGSWWLYPGDIGLILDGRWESCPDNLPAFLVPDASV 60

Query: 47  ------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKM 94
                          K D     LHG  GEDG +Q +L+L  IP+    + +SA  MDK+
Sbjct: 61  GGLLIRDSDHSDTVKKIDCVIPALHGKNGEDGTIQGLLQLAGIPFVGCDMTSSAACMDKV 120

Query: 95  RSKQVVSSCGVPVCPSILVNRFTMDSQ----------HLISPPYVIKPLKGGSSLGIIVI 144
            +  ++   G+P      +  +   S            L S P  +KP   GSS+G+   
Sbjct: 121 ITNVMLEQAGIPQARFTWLYAYEFQSAPDEAVLKIEKDLGSYPVFVKPANAGSSVGVSKA 180

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS---LDVTEIAVPKSDFYS 201
           +  + +   + +++      ++LIE+ + G E+ C V+G+             P ++FY 
Sbjct: 181 ENREELRAAIAKAA--KEDGKILIEENIVGQEVECAVLGNEDDLLASTVGEIAPSNEFYD 238

Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
           YE KY S  S   +PA +   + + ++  A  A+Q +GC G++R DF       +V   E
Sbjct: 239 YEAKYLSGTSGLYIPAHLESGVIETIRSTAQKAYQVLGCSGLARVDFFVRN-GSEVLLNE 297

Query: 262 INVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +N  PG T +S++P++  + G S +EL+  +++ A
Sbjct: 298 LNTLPGFTSISMYPKLMEHEGLSNQELIHRLIQLA 332


>gi|213961705|ref|ZP_03389971.1| D-ala D-ala ligase [Capnocytophaga sputigena Capno]
 gi|213955494|gb|EEB66810.1| D-ala D-ala ligase [Capnocytophaga sputigena Capno]
          Length = 325

 Score =  271 bits (693), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 90/323 (27%), Positives = 154/323 (47%), Gaps = 34/323 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           +A++MGG S+E  VSL S    A  L    +    + +DR   + +              
Sbjct: 5   IAIIMGGYSNEAPVSLKSAAVVAKNLNQDKYVPYLVRIDRDKWVYVDAQNNEHPIDKNDF 64

Query: 47  ------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
                   +  D  FN +HG  GEDG +QA   L+ +P T   + ASAL+ +K     V+
Sbjct: 65  SVTVNGRKITFDAVFNAIHGTPGEDGYLQAYFNLIGLPLTGCSMYASALTFNKRDMLSVL 124

Query: 101 SSCGVPVCPSILVNRF----TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
              G+   PS  +N+     T D    +  P  +K  K GSS G+  + ++  +P  +  
Sbjct: 125 KPFGILSAPSYYLNKGENYNTADIVAKVGLPCFVKANKSGSSFGVYKVYEEAQLP--MYI 182

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGD----ASLDVTEIAVPKSDFYSYELKYSSLNST 212
             ++   D++LIE ++ G E++ GV+        L +TEI V ++DF+ Y+ KY+   S 
Sbjct: 183 DKAFEVDDEILIESFLKGTEISIGVINYRGEIKVLPMTEI-VSENDFFDYDAKYN-GKSQ 240

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
            + PA++  ++  ++  LA   ++ +   G SRS+F+   +    + LE+N  PG++  S
Sbjct: 241 EITPARLSAEMTAKINALAERVYRLLKMEGFSRSEFII--VGDTPYLLEMNTTPGLSEAS 298

Query: 273 IFPEMAAYAGYSFRELLLWMVED 295
           + P+ A  AG S  EL    +E 
Sbjct: 299 LLPQQAKVAGISLEELFESEIER 321


>gi|72162041|ref|YP_289698.1| D-alanine--D-alanine ligase [Thermobifida fusca YX]
 gi|71915773|gb|AAZ55675.1| D-alanine--D-alanine ligase [Thermobifida fusca YX]
          Length = 329

 Score =  271 bits (693), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 95/308 (30%), Positives = 152/308 (49%), Gaps = 18/308 (5%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62
           VL GG+S E EVS+ SG+  A AL     +V   DV   +  +L    P + F VLHG  
Sbjct: 22  VLAGGLSPEHEVSVRSGRRVAEALRRLDVEVQTCDVGPELLNLLTDDPPQVVFPVLHGTS 81

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ- 121
           GEDG ++ +LEL  +PY  +   A   +  K  +K +V+  G+ V   + + +       
Sbjct: 82  GEDGAIREVLELAGVPYVGARPDACRATYAKPIAKTLVAEQGIAVPRGLALPKSLFHDLG 141

Query: 122 ---------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                     ++  P  +KP +GGS+ G   + +  ++P  L+  S + + D  LIEQ V
Sbjct: 142 AHAVLERIVAMLGLPLFVKPAQGGSAFGATAVTEASALPAALV--SCFAYSDTALIEQQV 199

Query: 173 DGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
            G+E+  GV+    G  +L   EI VP    Y Y  +Y++  +    PA++  ++ +   
Sbjct: 200 TGVEVAVGVLDLGDGPVALPAVEI-VPDGGVYDYAARYTAGRTEFFSPARLSDEVARAAA 258

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
             A  AH+A+G R +SR+D + D  + +V++LE+NV PGMT  S  P     AG  F  +
Sbjct: 259 DAAVTAHRALGLRDVSRTDLIIDE-TGRVYFLEVNVSPGMTDTSTLPLAVEAAGMDFAVV 317

Query: 289 LLWMVEDA 296
              +   A
Sbjct: 318 CRELAHRA 325


>gi|254975259|ref|ZP_05271731.1| putative D-alanine:D-alanine ligase (putative
           vancomycin/teicoplanin A-type resistance protein)
           [Clostridium difficile QCD-66c26]
 gi|255092649|ref|ZP_05322127.1| putative D-alanine:D-alanine ligase (putative
           vancomycin/teicoplanin A-type resistance protein)
           [Clostridium difficile CIP 107932]
 gi|255314386|ref|ZP_05355969.1| putative D-alanine:D-alanine ligase (putative
           vancomycin/teicoplanin A-type resistance protein)
           [Clostridium difficile QCD-76w55]
 gi|255517064|ref|ZP_05384740.1| putative D-alanine:D-alanine ligase (putative
           vancomycin/teicoplanin A-type resistance protein)
           [Clostridium difficile QCD-97b34]
 gi|255650168|ref|ZP_05397070.1| putative D-alanine:D-alanine ligase (putative
           vancomycin/teicoplanin A-type resistance protein)
           [Clostridium difficile QCD-37x79]
 gi|260683291|ref|YP_003214576.1| putative D-alanine:D-alanine ligase [Clostridium difficile CD196]
 gi|260686887|ref|YP_003218020.1| putative vancomycin/teicoplanin A-type resistance protein
           [Clostridium difficile R20291]
 gi|260209454|emb|CBA62964.1| putative D-alanine:D-alanine ligase (putative
           vancomycin/teicoplanin A-type resistance protein)
           [Clostridium difficile CD196]
 gi|260212903|emb|CBE04146.1| putative D-alanine:D-alanine ligase (putative
           vancomycin/teicoplanin A-type resistance protein)
           [Clostridium difficile R20291]
          Length = 366

 Score =  271 bits (693), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 87/255 (34%), Positives = 137/255 (53%), Gaps = 9/255 (3%)

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV 105
           + + K D  F VLHG  GEDG VQ + EL  I     G L+SAL MDK +S ++V S G+
Sbjct: 111 IKYTKLDFVFPVLHGKNGEDGTVQGLFELAGIQVIGCGTLSSALCMDKDKSHKLVHSEGI 170

Query: 106 PVCPSILVNRFT----MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN 161
            V  SIL+         +    ++ P  IKP++ GSS GI  I K + + + +    ++ 
Sbjct: 171 KVPKSILLKYSDKFNVAELSKDLTYPLFIKPVRAGSSFGISKIYKKEELQVAVDL--AFE 228

Query: 162 HGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK--SDFYSYELKYSSLNSTHVLPAKI 219
           H ++++IE+ +DG E+ C V+G+  L V  +   +    F+ Y  KY+  +S   +PA+I
Sbjct: 229 HDNEVIIEENIDGFEVGCAVLGNDDLLVGRVDEIELSKGFFDYTEKYTLKSSKIHMPARI 288

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279
            LD  K +Q  A + ++ +GC G +R D    P   ++ + E+N  PG T  S +P M  
Sbjct: 289 DLDCEKRIQETAKIIYRTLGCSGFARVDMFLTPS-GEIIFNEVNTIPGFTSHSRYPNMMK 347

Query: 280 YAGYSFRELLLWMVE 294
             G SF E+L  ++E
Sbjct: 348 GIGLSFEEILDKIIE 362



 Score = 61.7 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 21/44 (47%)

Query: 1  MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL 44
          +AV+ GG S+E +VSL S  A    L    + +  I + R    
Sbjct: 6  IAVIFGGNSTEYDVSLQSAFAVLENLNTEKYDIIPIGITREGNW 49


>gi|224531899|ref|ZP_03672531.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase) [Borrelia
           valaisiana VS116]
 gi|224511364|gb|EEF81770.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase) [Borrelia
           valaisiana VS116]
          Length = 361

 Score =  271 bits (693), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 89/342 (26%), Positives = 162/342 (47%), Gaps = 50/342 (14%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDA-GFKVSQIDVDR--------------------- 40
           ++ GG+S E E+S  S       L D   + +  + +D+                     
Sbjct: 7   LIFGGVSFEHEISCKSAYGIYLTLLDLDKYNIYPVYIDKCTGIWYLLESVSDPPKPINID 66

Query: 41  -----------SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
                       +     +L+ D+ F V+HG  GEDG +Q +L++++IP   +GI+ SA+
Sbjct: 67  VLPVVSLLPGFGIFANNKNLEIDVVFPVVHGRTGEDGAIQGVLKVMDIPCVGAGIMGSAI 126

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPLKGGSSLG 140
           S +K   K ++ S  +P+ P I   ++           D + ++  P +IKP   GSS+G
Sbjct: 127 SSNKYFCKLLLKSFNIPLVPFIGFRQYDYFLDKEEIKRDVKEVLGYPVIIKPAVLGSSIG 186

Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS---LDVTEIAVPKS 197
           I V   +  I   + +S    +   ++IE++++  E+ C V+G+         E+ V   
Sbjct: 187 INVAYSENQIESFIKESL--KYDLTIVIEKFIEAREIECSVIGNEKIKIFSPGEVVVQDF 244

Query: 198 DFYSYELKYS--SLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
            FY Y+ KYS    NS     PA +  +    ++  AFL ++ +G RG++R DF  +  S
Sbjct: 245 IFYDYDAKYSVIPGNSIIFNIPAYLETNQLLTIKEYAFLVYKNLGLRGMARVDFFVEKKS 304

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             ++  EIN  PG T +S+F +M ++ G  F++L+  +++ A
Sbjct: 305 GTIYLNEINTIPGFTDISMFAKMCSHDGLQFKDLVDNLIDYA 346


>gi|126699230|ref|YP_001088127.1| putative vancomycin/teicoplanin A-type resistance protein
           [Clostridium difficile 630]
 gi|115250667|emb|CAJ68491.1| D-alanine--D-alanine ligase 2 [Clostridium difficile]
          Length = 366

 Score =  271 bits (693), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 87/255 (34%), Positives = 137/255 (53%), Gaps = 9/255 (3%)

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV 105
           + + K D  F VLHG  GEDG VQ + EL  I     G L+SAL MDK +S ++V S G+
Sbjct: 111 IKYTKLDFVFPVLHGKNGEDGTVQGLFELAGIQVIGCGTLSSALCMDKDKSHKLVHSEGI 170

Query: 106 PVCPSILVNRFT----MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN 161
            V  SIL+         +    ++ P  IKP++ GSS GI  I K + + + +    ++ 
Sbjct: 171 KVPKSILLKYSDKFNVAELSKDLTYPLFIKPVRAGSSFGISKIYKKEELQVAVDL--AFE 228

Query: 162 HGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK--SDFYSYELKYSSLNSTHVLPAKI 219
           H ++++IE+ +DG E+ C V+G+  L V  +   +    F+ Y  KY+  +S   +PA+I
Sbjct: 229 HDNEVIIEENIDGFEVGCAVLGNNDLLVGRVDEIELSKGFFDYTEKYTLKSSKIHMPARI 288

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279
            LD  K +Q  A + ++ +GC G +R D    P   ++ + E+N  PG T  S +P M  
Sbjct: 289 DLDCEKRIQETAKIIYRTLGCSGFARVDMFLTPS-GEIIFNEVNTIPGFTSHSRYPNMMK 347

Query: 280 YAGYSFRELLLWMVE 294
             G SF E+L  ++E
Sbjct: 348 GIGLSFEEILDKIIE 362



 Score = 61.3 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 21/44 (47%)

Query: 1  MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL 44
          +AV+ GG S+E +VSL S  A    L    + +  I + R    
Sbjct: 6  IAVIFGGNSTEYDVSLQSAFAVLENLNTEKYDILPIGITREGNW 49


>gi|119952997|ref|YP_945206.1| D-alanyl-alanine synthetase A [Borrelia turicatae 91E135]
 gi|254767722|sp|A1QYZ4|DDL_BORT9 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|119861768|gb|AAX17536.1| D-alanine--D-alanine ligase [Borrelia turicatae 91E135]
          Length = 365

 Score =  271 bits (693), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 87/342 (25%), Positives = 158/342 (46%), Gaps = 50/342 (14%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDA-GFKVSQIDVDR--------------------- 40
           ++ GG+S E E+SL S     SAL     + V    +D+                     
Sbjct: 8   LIFGGVSFEHEISLRSACGIYSALMKLDKYNVFSSFIDKITGVWYLLDSVPDDPKLIKKD 67

Query: 41  -----------SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
                       + +    LK D+ F ++HG  GEDG +Q  L++++IP   SGIL SA+
Sbjct: 68  SSAIISLIPGYGIFVNNKDLKIDVVFPIVHGRTGEDGAIQGFLKIMDIPCVGSGILGSAI 127

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPLKGGSSLG 140
           S++K   K ++ S  +P+ P I   ++           D +  +  P ++KP   GSS+G
Sbjct: 128 SINKYFCKLLLKSFNIPLVPFIGFKKYDYLLDKEGIKKDIKQSLDYPVIVKPAMLGSSIG 187

Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV---TEIAVPKS 197
           I +   +  I        ++ +   ++IE+++   E+ C V+G+  + +    EI +   
Sbjct: 188 ISIAYNETQIEK--CIEEAFAYDLTVVIEKFMRAREIECAVIGNEQIKIFTPGEIVIQDF 245

Query: 198 DFYSYELKYSS---LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
            FY Y+ KYS+    +    +PA +      +++  AF  ++ +  RG++R DFL +  +
Sbjct: 246 VFYDYDAKYSTAPGNSVVFNIPAHLDTKHLLDIKEYAFFTYKCLELRGMARIDFLIEKDT 305

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             V+  EIN  PG T +S+F +M  + G  +  L+  ++  A
Sbjct: 306 DLVYINEINTIPGFTDISMFSKMCEHDGLDYGSLVDKLIALA 347


>gi|255306638|ref|ZP_05350809.1| putative D-alanine:D-alanine ligase (putative
           vancomycin/teicoplanin A-type resistance protein)
           [Clostridium difficile ATCC 43255]
          Length = 366

 Score =  271 bits (693), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 86/255 (33%), Positives = 137/255 (53%), Gaps = 9/255 (3%)

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV 105
           + + K D  F +LHG  GEDG VQ + EL  I     G L+SAL MDK +S ++V S G+
Sbjct: 111 IKYTKLDFVFPILHGKNGEDGTVQGLFELAGIQVIGCGTLSSALCMDKDKSHKLVHSEGI 170

Query: 106 PVCPSILVNRFT----MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN 161
            V  SIL+         +    ++ P  IKP++ GSS GI  I K + + + +    ++ 
Sbjct: 171 KVPKSILLKYSDKFNVAELSKDLTYPLFIKPVRAGSSFGISKIYKKEELQVAVDL--AFE 228

Query: 162 HGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK--SDFYSYELKYSSLNSTHVLPAKI 219
           H ++++IE+ +DG E+ C V+G+  L V  +   +    F+ Y  KY+  +S   +PA+I
Sbjct: 229 HDNEVIIEENIDGFEVGCAVLGNDDLLVGRVDEIELSKGFFDYTEKYTLKSSKIHMPARI 288

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279
            LD  K +Q  A + ++ +GC G +R D    P   ++ + E+N  PG T  S +P M  
Sbjct: 289 DLDCEKRIQETAKIIYRTLGCSGFARVDMFLTPS-GEIIFNEVNTIPGFTSHSRYPNMMK 347

Query: 280 YAGYSFRELLLWMVE 294
             G SF E+L  ++E
Sbjct: 348 GIGLSFEEILDKIIE 362



 Score = 61.3 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 21/44 (47%)

Query: 1  MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL 44
          +AV+ GG S+E +VSL S  A    L    + +  I + R    
Sbjct: 6  IAVIFGGNSTEYDVSLQSAFAVLENLNTEKYDILPIGITREGNW 49


>gi|325289080|ref|YP_004265261.1| D-alanine--D-alanine ligase [Syntrophobotulus glycolicus DSM 8271]
 gi|324964481|gb|ADY55260.1| D-alanine--D-alanine ligase [Syntrophobotulus glycolicus DSM 8271]
          Length = 339

 Score =  271 bits (693), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 94/339 (27%), Positives = 156/339 (46%), Gaps = 53/339 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           + VL GG+S ER+VSLSSG   ++AL + G  V  +D+   +G+   H++P         
Sbjct: 3   IIVLAGGLSPERDVSLSSGALISNALIEKGHDVMLLDL--YLGINNKHIEPAYINLKSNK 60

Query: 52  --------------------------------------DLAFNVLHGNFGEDGLVQAILE 73
                                                 D+ F  LHG+ GE+G +QA+L+
Sbjct: 61  TFSYLVPPEEPDLDAIKASVNNRGSLIGDGIIDLCKEADVVFLALHGSIGENGKLQAVLD 120

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPL 133
           +  I YT +G + S L+MDK  SK+++ S  +       V+  T      I+ P V+KP 
Sbjct: 121 INGIKYTGTGYVGSLLAMDKDLSKKLILSNNILTPHWKYVDLQTDTDFDDINYPCVVKPC 180

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
             GSS+G+ +++    +   +    +  + + ++IE+ + G E + G++   +L V EI 
Sbjct: 181 SCGSSVGVTMVETPSELNSAI--EFAKKYENSVIIEEKIVGREFSVGILNGEALPVIEIK 238

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
            P   FY Y+ KY    +  + PA I  +I   +Q  A   H  +     SR DF+ D  
Sbjct: 239 -PLIGFYDYKNKYQKGLTGEICPANISNEIRYLLQNSAVKVHNLLRLGFYSRIDFILDQS 297

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +   + LE N  PGMTP S+ P+ A     ++ +L   +
Sbjct: 298 NNA-YCLEANTLPGMTPTSLLPQEALANDITYSDLCEKI 335


>gi|150009273|ref|YP_001304016.1| D-alanyl-alanine synthetase A [Parabacteroides distasonis ATCC
           8503]
 gi|190359198|sp|A6LFD0|DDL_PARD8 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|149937697|gb|ABR44394.1| D-alanine--D-alanine ligase [Parabacteroides distasonis ATCC 8503]
          Length = 330

 Score =  271 bits (693), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 82/327 (25%), Positives = 151/327 (46%), Gaps = 31/327 (9%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVS-------------------QID-VDR 40
           +A++ GG SSE  +SL S     S ++   + +                     ID  D 
Sbjct: 5   IAIVAGGDSSEIVISLKSADGIYSFIDKDKYNLYIAIVKRDEWAVILPSGEHTPIDKNDF 64

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           S          D A+  +HG  GEDG +Q   +++ +PY+  G+L SAL+ +K      +
Sbjct: 65  SFKENGVTRHFDFAYITIHGTPGEDGRLQGYFDMIGMPYSSCGMLVSALTFNKYVCNHYL 124

Query: 101 SSCGVPVCPSILVNRFTMDSQHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
              GV +  SI + +    +       +  P  +KP  GGSS G+  +K+  +I   + +
Sbjct: 125 KDFGVKIAASIHLFKGETITDEEVVTRLGLPIFVKPNDGGSSFGVTKVKEVSAIQPAIAK 184

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVM---GDASLDVTEIAVPKSDFYSYELKYSSLNSTH 213
             ++  G ++++E+++DG E+TCG     G   +      V  ++F+ ++ KY+      
Sbjct: 185 --AFGEGREVILERFIDGTEVTCGCYKVEGKEVVFPLTEVVTNNEFFDFDAKYN-GQVDE 241

Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273
           + PA+I  ++ + +Q      +  +G +G+ R D++  P   +   LEIN  PGMT  S 
Sbjct: 242 ITPARISTELTELIQCETSRIYDILGAKGLIRVDYII-PADGEPVLLEINTTPGMTATSF 300

Query: 274 FPEMAAYAGYSFRELLLWMVEDASCLR 300
            P+    AG   ++++  ++ED    R
Sbjct: 301 IPQQVRAAGLDIKDVMTDIIEDELKNR 327


>gi|255100754|ref|ZP_05329731.1| putative D-alanine:D-alanine ligase (putative
           vancomycin/teicoplanin A-type resistance protein)
           [Clostridium difficile QCD-63q42]
          Length = 366

 Score =  271 bits (693), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 87/255 (34%), Positives = 137/255 (53%), Gaps = 9/255 (3%)

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV 105
           + + K D  F VLHG  GEDG VQ + EL  I     G L+SAL MDK +S ++V S G+
Sbjct: 111 IKYTKLDFVFPVLHGKNGEDGTVQGLFELAGIQVIGCGTLSSALCMDKDKSHKLVHSEGI 170

Query: 106 PVCPSILVNRFT----MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN 161
            V  SIL+         +    ++ P  IKP++ GSS GI  I K + + + +    ++ 
Sbjct: 171 KVPKSILLKYSDKFNVAELSKDLTYPLFIKPVRAGSSFGISKIYKKEELQVAVDL--AFE 228

Query: 162 HGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK--SDFYSYELKYSSLNSTHVLPAKI 219
           H ++++IE+ +DG E+ C V+G+  L V  +   +    F+ Y  KY+  +S   +PA+I
Sbjct: 229 HDNEVIIEENIDGFEVGCAVLGNNDLLVGRVDEIELSKGFFDYTEKYTLKSSKIHMPARI 288

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279
            LD  K +Q  A + ++ +GC G +R D    P   ++ + E+N  PG T  S +P M  
Sbjct: 289 DLDCEKRIQETAKIIYRTLGCSGFARVDMFLTPS-GEIIFNEVNTIPGFTSHSRYPNMMK 347

Query: 280 YAGYSFRELLLWMVE 294
             G SF E+L  ++E
Sbjct: 348 GIGLSFEEILDKIIE 362



 Score = 61.7 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 21/44 (47%)

Query: 1  MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL 44
          +AV+ GG S+E +VSL S  A    L    + +  I + R    
Sbjct: 6  IAVIFGGNSTEYDVSLQSAFAVLENLNTEKYDIIPIGITREGNW 49


>gi|124009981|ref|ZP_01694645.1| D-alanine--D-alanine ligase [Microscilla marina ATCC 23134]
 gi|123984003|gb|EAY24386.1| D-alanine--D-alanine ligase [Microscilla marina ATCC 23134]
          Length = 394

 Score =  271 bits (693), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 92/362 (25%), Positives = 155/362 (42%), Gaps = 72/362 (19%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           + V  GG S E E+S+ S      A++ + + V+ I + ++                   
Sbjct: 5   IGVFFGGRSVEHEISVISALQAIQAIDHSRYDVTPIYISKAGQWYTGEQLLDVENYRKLD 64

Query: 50  -----------------------------------KPDLAFNVLHGNFGEDGLVQAILEL 74
                                              K D+AF VLHG+FGEDG +Q + EL
Sbjct: 65  ELLNNSTKIIMSPNFEDYSFVESGAKGLFKKPLKGKIDIAFPVLHGSFGEDGALQGLFEL 124

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLIS 125
           + IPY    +L+SA+ MDK+  K V+   G+PV   +                  +  + 
Sbjct: 125 MGIPYIGCDVLSSAVGMDKIMMKMVLKESGLPVVKYVWFYSKNWQQDTTSHIGKVEQTLG 184

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMG- 183
            P ++KP   GSS+GI      + +   +  ++ ++H  +LL+EQ + D  E+ C V+G 
Sbjct: 185 YPVIVKPANLGSSVGIKKAANREELEEAIDYAAGFSH--KLLVEQTIVDLKEINCSVLGN 242

Query: 184 --DASLDVTEIAVPKSDFYSYELKY-------SSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
             +A     E  +   +  SY+ KY           +   LPA+IP ++  ++Q+LA   
Sbjct: 243 YENAQASTCEEPLMSGEILSYQDKYVTKGGNKGMSGTKRKLPAEIPTEMSDKIQQLAVDT 302

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            Q +GC G+SR DFL D  + +V+  EIN  PG     +          +F +L+  +++
Sbjct: 303 FQVLGCAGVSRIDFLLDQATNEVYVNEINTIPGSLSFYL----WEATDKNFGQLVNDLID 358

Query: 295 DA 296
            A
Sbjct: 359 TA 360


>gi|86358076|ref|YP_469968.1| D-alanine-D-alanine ligase protein [Rhizobium etli CFN 42]
 gi|86282178|gb|ABC91241.1| D-alanine-D-alanine ligase protein [Rhizobium etli CFN 42]
          Length = 358

 Score =  271 bits (693), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 92/341 (26%), Positives = 154/341 (45%), Gaps = 51/341 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           +AVL GG S+E +VS+ S     +ALE   +    + V      +L+             
Sbjct: 10  IAVLFGGRSAEHDVSILSATNVMAALEPEKYDALPVFVTHEGQWLLSSFEDGRLATPSSG 69

Query: 50  --------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                     + D+ F VLHG  GEDG VQ   ++  +P    G
Sbjct: 70  TEICLVPGGRGRMLAMSAHGAPHELPRIDILFPVLHGPHGEDGSVQGSAQVARVPLAGCG 129

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSL 139
           IL SA ++DK  +K+++ + G+PV  ++ ++     S    +  +  P  IKP + GSS+
Sbjct: 130 ILGSATALDKDIAKRLLRAAGLPVARAVTIHEGAAPSLSALEGELGLPLFIKPARQGSSV 189

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD-----VTEIAV 194
           G+  +   Q     L Q  ++ H   LL E++V G E+   V+ D           EI  
Sbjct: 190 GVAKVHASQEFAAALEQ--AFRHDRILLAEEFVAGREIEFSVLEDTDGKLFVSRPGEIVP 247

Query: 195 PKS-DFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            +S  FY+Y  KY     +   +PA +P +I   ++ +A  A +A+GC G++R DF    
Sbjct: 248 AESHGFYNYSAKYIDENGAALKVPADLPAEIEAAMRDMAARAFRAVGCDGMARVDFFLT- 306

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
              +    E+N  PG T +S++ +  A +G S+ E++  +V
Sbjct: 307 SDMRFVINELNTIPGFTDISMYSKAMAASGVSYAEIIDRLV 347


>gi|289676716|ref|ZP_06497606.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. syringae
           FF5]
          Length = 264

 Score =  270 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 78/259 (30%), Positives = 144/259 (55%), Gaps = 14/259 (5%)

Query: 53  LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
           + F ++HG FGEDG +Q +L +L +P+  + +L+SA+ MDK  +K+++   G+ V P  +
Sbjct: 1   VVFPLIHGAFGEDGALQGLLRMLAVPFVGADVLSSAVCMDKDVTKRLLRDAGITVAPFRV 60

Query: 113 VNRFT----MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168
           ++R       ++   +  P  IKP   GSS+G+  +  +      L     ++H  +LLI
Sbjct: 61  LSRGESLSFTEAADQLGLPMFIKPANQGSSVGVSKVSDEAGFAAALALGFEFDH--KLLI 118

Query: 169 EQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHV-LPAKIPLDIYK 225
           EQ + G E+ C V+G+  + V+     +   +FY+Y+ KY + +   + +PA++P D+  
Sbjct: 119 EQGIVGREVECAVLGNVDVQVSVCGEVIANDEFYAYDTKYLNGDQARIAIPAELPADLSD 178

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285
           +V+ +A  A++ +GC G+SR DF      R +   E+N  PG T +S++P++   +G S+
Sbjct: 179 QVREVALQAYKVLGCAGLSRVDFFVTE-GRDIIINEVNTLPGFTSISMYPKLWQASGLSY 237

Query: 286 RELLLWMV----EDASCLR 300
            EL+  ++    E A   R
Sbjct: 238 AELIHRLIVLALERADQAR 256


>gi|332292608|ref|YP_004431217.1| D-alanine--D-alanine ligase [Krokinobacter diaphorus 4H-3-7-5]
 gi|332170694|gb|AEE19949.1| D-alanine--D-alanine ligase [Krokinobacter diaphorus 4H-3-7-5]
          Length = 332

 Score =  270 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 103/326 (31%), Positives = 158/326 (48%), Gaps = 37/326 (11%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS------VGLVLAHLKPDLA 54
           +AVLMGG SSE ++SL+SG    ++L+   ++V  + + +        G   A  K D +
Sbjct: 6   IAVLMGGYSSEYQISLNSGATVVASLDKEKYQVYAVHILKEGWFCVIDGERFAIDKGDFS 65

Query: 55  F--------------NVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           F              N +HG  GEDG +QA LELL IP T      SA++ +K  +  V+
Sbjct: 66  FIDAFAKKVTFQACYNTIHGTPGEDGKLQAYLELLGIPQTSCDFYESAMTFNKRDTLSVL 125

Query: 101 SSCGVPVCPSILVNRFTMDSQH-------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153
           SS GVP+  S+ VN+  +            +  P  +KP + GSS G+  + K+  +   
Sbjct: 126 SSYGVPMAQSVYVNKGDVIDMPFKNSLALKVGYPCFVKPNRAGSSYGVSKVYKEGDLEQA 185

Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCGVMG----DASLDVTEIAVPKSDFYSYELKYSSL 209
           L    +++   Q+LIE ++ G E++ GV         L   EI VP  DF+S E KYS  
Sbjct: 186 L--EHAFSEDSQVLIESFLSGTEVSVGVYNFGGETQVLPACEI-VPDGDFFSLEAKYS-G 241

Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
            S  ++PA++      EVQ L    +  +  +GI R DF+F     K  ++E+N  PG++
Sbjct: 242 KSQEIVPARLSEKETNEVQGLTKGIYDLLSLKGICRVDFIFHE--GKPHFVEVNTNPGLS 299

Query: 270 PVSIFPEMAAYAGYSFRELLLWMVED 295
             SI P     AG S  E+    +E 
Sbjct: 300 KESIIPREFKAAGLSLAEVFGEAIEH 325


>gi|183601816|ref|ZP_02963185.1| D-alanine-D-alanine ligase [Bifidobacterium animalis subsp. lactis
           HN019]
 gi|219682731|ref|YP_002469114.1| D-alanyl-alanine synthetase A [Bifidobacterium animalis subsp.
           lactis AD011]
 gi|241190307|ref|YP_002967701.1| D-alanyl-alanine synthetase A [Bifidobacterium animalis subsp.
           lactis Bl-04]
 gi|241195713|ref|YP_002969268.1| D-alanyl-alanine synthetase A [Bifidobacterium animalis subsp.
           lactis DSM 10140]
 gi|254767721|sp|B8DVN7|DDL_BIFA0 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|183218701|gb|EDT89343.1| D-alanine-D-alanine ligase [Bifidobacterium animalis subsp. lactis
           HN019]
 gi|219620381|gb|ACL28538.1| D-alanine-D-alanine ligase [Bifidobacterium animalis subsp. lactis
           AD011]
 gi|240248699|gb|ACS45639.1| D-alanine-D-alanine ligase [Bifidobacterium animalis subsp. lactis
           Bl-04]
 gi|240250267|gb|ACS47206.1| D-alanine-D-alanine ligase [Bifidobacterium animalis subsp. lactis
           DSM 10140]
 gi|295793294|gb|ADG32829.1| D-alanine-D-alanine ligase [Bifidobacterium animalis subsp. lactis
           V9]
          Length = 378

 Score =  270 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 94/374 (25%), Positives = 152/374 (40%), Gaps = 77/374 (20%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +AVL GG + E  +S  S  +   AL+   F+   I + ++    +    P         
Sbjct: 6   VAVLYGGKADEHSISCISAASFMRALDPELFEAVPIGITKTGTWFVDGQDPLGWNLAEGL 65

Query: 52  --------------------------------------DLAFNVLHGNFGEDGLVQAILE 73
                                                 D+    LHG FGEDG +Q + E
Sbjct: 66  PEAVETPDSREVVLTIGDGGDGFHARNADGSLDSLGHIDVVLPALHGPFGEDGTIQGLFE 125

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------------- 120
           ++ +PY   G+LASA  MDK  +K ++ + G+PV P I ++    D+             
Sbjct: 126 MMGVPYVGCGVLASAACMDKHYTKVLLRAAGIPVAPGITLDTRHYDASDEFATDGEEFLR 185

Query: 121 ---QHLISPPYVIKPLKGGSSLGIIVIKK-DQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
              +  +  P  +KP + GSS G+  +++   +  L      +  H  ++L+EQ +D  E
Sbjct: 186 QVNEAGLQYPLFVKPSRAGSSFGVTKVEQIGDAAALAAAVFEASRHDWRVLVEQGIDARE 245

Query: 177 LTCGVMGDASLDVTEIAVP-----------KSDFYSYELKYSSLNSTHV-LPAKIPLDIY 224
           + C V+     D T  A+P              FY ++ KY    ++H  +PAKI  D+ 
Sbjct: 246 IECAVVRIHPTDPTRAALPGEVVLDRRSEGDDQFYDFDSKYMDSQASHTEIPAKIGDDLI 305

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
             V+  A  A  A+   G+SR D         V   EIN  PG T +S+FP+     G  
Sbjct: 306 ARVRETAVRAFDAVDGMGLSRVDTFVTA-DGDVLVNEINTLPGCTSISMFPQAWEAMGIP 364

Query: 285 FRELLLWMVEDASC 298
           FR ++  ++E A  
Sbjct: 365 FRTVVTDLIEGALA 378


>gi|150024748|ref|YP_001295574.1| D-alanyl-alanine synthetase A [Flavobacterium psychrophilum
           JIP02/86]
 gi|189083042|sp|A6GXD5|DDL_FLAPJ RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|149771289|emb|CAL42758.1| D-alanine--D-alanine ligase [Flavobacterium psychrophilum JIP02/86]
          Length = 328

 Score =  270 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 92/327 (28%), Positives = 163/327 (49%), Gaps = 33/327 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-------------------DRS 41
           +AV+MGG S E  +SL SG+   + L+ + + + ++ +                   D S
Sbjct: 3   VAVVMGGYSDESVISLRSGQLILNNLDKSKYNIFEVHILLKDWSVVIEGEKYPINKADFS 62

Query: 42  VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
                   K D+A N +HG  GEDG +Q+  EL++IPYT      SAL+ +K  +  V++
Sbjct: 63  FTKNGVITKFDVAINTVHGTPGEDGHLQSYWELIDIPYTGCNFYQSALTFNKRDTLSVLT 122

Query: 102 SCGVPVCPSILVNRFTM----DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
              +P   SI + +  +    + +  +  P+ +KP + GSSLG+  +     +   L   
Sbjct: 123 KFNIPKAKSIYLRKGDVIDGNEIKKALGLPFFVKPNQSGSSLGVSKVDALDQLEKAL--E 180

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMG----DASLDVTEIAVPKSDFYSYELKYSSLNSTH 213
            ++   +++LIE Y++G E++ GV+        L +TEI + ++DF+ YE KY    S  
Sbjct: 181 FAFAEDNEILIESYLNGTEVSVGVLNYKGQTKVLGITEI-LSQNDFFDYEAKYL-GKSEE 238

Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273
           + PA+I  +    V   A   + ++G  G SR+DF+   ++    ++EIN  PG++P SI
Sbjct: 239 ITPARISKEEEILVAESAKKIYNSLGMSGFSRTDFII--MNGIPHFIEINTNPGLSPQSI 296

Query: 274 FPEMAAYAGYSFRELLLWMVEDASCLR 300
           FP+ A +A     ++L   +  A   +
Sbjct: 297 FPQQAMFAKMDMPQMLDNEITLALSRK 323


>gi|305664422|ref|YP_003860709.1| D-alanylalanine synthetase [Maribacter sp. HTCC2170]
 gi|88708439|gb|EAR00675.1| D-alanylalanine synthetase [Maribacter sp. HTCC2170]
          Length = 327

 Score =  270 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 101/323 (31%), Positives = 157/323 (48%), Gaps = 34/323 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40
           +A++MGG SSE ++SL SG      L+   ++  +I +                    D 
Sbjct: 5   VAIIMGGYSSEYKISLKSGNVVHDYLDKEKYERYRIHIFKQKWVYVDDVNAEHEVNKDDF 64

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           S+ +    +  D  FN +HG  GEDGL+QA  ELL IP T  G   +AL+ +K     V+
Sbjct: 65  SIQVNNEKIVFDCVFNAIHGTPGEDGLMQAYFELLGIPQTSCGYYQAALTFNKRDLLSVL 124

Query: 101 SSCGVPVCPSILVNRFTMDSQHLI----SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
              G+   PS  +N     ++  I      P  +K  K GSS GI  + +   +   +  
Sbjct: 125 KPYGIKSAPSYYLNLGDEINEDAIIEQVGLPCFVKANKAGSSFGISKVNEKDRLKEAI-- 182

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMG----DASLDVTEIAVPKSDFYSYELKYSSLNST 212
             ++   D+++IE ++DG E++ GV+        L +TEI V ++DF+ YE KY    S 
Sbjct: 183 EFAYKEDDEIIIEGFLDGTEVSVGVIKYKGETKVLPITEI-VTENDFFDYEAKYE-GKSQ 240

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
            + PA+I     K V + A  A+  +   G SRS+F+F  +  + F LE+N  PG+T  S
Sbjct: 241 EITPARISSRQEKNVIQAAKRAYDVLKMTGFSRSEFIF--IGDEPFMLEMNTTPGLTTES 298

Query: 273 IFPEMAAYAGYSFRELLLWMVED 295
           I P+ A  AG S  EL    +E+
Sbjct: 299 ILPQQAGEAGISLSELFGGAIEE 321


>gi|282881101|ref|ZP_06289788.1| D-ala D-ala ligase N-terminal domain protein [Prevotella timonensis
           CRIS 5C-B1]
 gi|281304905|gb|EFA96978.1| D-ala D-ala ligase N-terminal domain protein [Prevotella timonensis
           CRIS 5C-B1]
          Length = 333

 Score =  270 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 92/328 (28%), Positives = 151/328 (46%), Gaps = 37/328 (11%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40
           +A++ GG SSE +VSL S +   S  +   + V  + +                    D 
Sbjct: 8   IAIVCGGDSSEYDVSLRSAQGLYSFFDKERYHVFIVTIRGLDWNVCLEDGSTVKVDRNDF 67

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           S       +  D A+  +HG  GE+G++Q   EL++IPY+ SG+L  AL+ +K    + +
Sbjct: 68  SFVHNGKSIIFDYAYITIHGTPGENGIIQGYFELVDIPYSTSGVLVEALTFNKFVLNRYL 127

Query: 101 SSCGVPVCPSILVNR------FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154
           +S GV V  SIL+ R         + +  +  P  +KP+  GSS G+  +K    +   L
Sbjct: 128 ASFGVKVAKSILLRRGEESKLSEQEIEAQLGMPCFVKPVADGSSFGVTKVKNSDQLAPAL 187

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS----LDVTEIAVPKSDFYSYELKYSSLN 210
               ++   +  +IE Y+ G+EL+ G    +        TE+ V  ++F+ Y+ KY+   
Sbjct: 188 --RVAFMQNEAAMIESYMKGVELSIGCYKTSEKAVVFPATEV-VTSNEFFDYDAKYN-GQ 243

Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF--DPLSRKVF-WLEINVQPG 267
              + PA+I  D  K+V       +  + C GI R D++   D     V   LE+N  PG
Sbjct: 244 VQEITPARIADDTAKKVAEETSKIYDILHCNGIIRIDYIITKDEQGNDVVNMLEVNTTPG 303

Query: 268 MTPVSIFPEMAAYAGYSFRELLLWMVED 295
           MT  S  P+    AG    E+L  +VE+
Sbjct: 304 MTATSFIPQQVRAAGLDITEVLTEIVEN 331


>gi|262384160|ref|ZP_06077296.1| D-alanyl-alanine synthetase A [Bacteroides sp. 2_1_33B]
 gi|262295058|gb|EEY82990.1| D-alanyl-alanine synthetase A [Bacteroides sp. 2_1_33B]
          Length = 330

 Score =  270 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 83/327 (25%), Positives = 151/327 (46%), Gaps = 31/327 (9%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVS-------------------QID-VDR 40
           +A++ GG SSE  +SL S     S ++   + +                     ID  D 
Sbjct: 5   IAIVAGGDSSEIVISLKSADGIYSFIDKDKYNLYIAIVKRDEWAVILPSGEHTPIDKNDF 64

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           S          D A+  +HG  GEDG +Q   +++ +PY+  G+L SAL+ +K      +
Sbjct: 65  SFKENGVTRHFDFAYITIHGTPGEDGRLQGYFDMIGMPYSSCGMLVSALTFNKYVCNHYL 124

Query: 101 SSCGVPVCPSILVNRFTMDSQHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
              GV +  SI + +    +       +  P  +KP  GGSS G+  +K+  +I   + +
Sbjct: 125 KDFGVKIAASIHLFKGETITDEEVVTRLGLPIFVKPNDGGSSFGVTKVKELSAIQPAIAK 184

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVM---GDASLDVTEIAVPKSDFYSYELKYSSLNSTH 213
             ++  G ++++E ++DG E+TCG     G   +      V  ++F+ ++ KY+      
Sbjct: 185 --AFGEGREVILESFIDGTEVTCGCYKVEGKEVVFPLTEVVTDNEFFDFDAKYN-GQVDE 241

Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273
           + PA+I  ++ + +QR     +  +G +G+ R D++  P   +   LEIN  PGMT  S 
Sbjct: 242 ITPARISTELTELIQRKTSRIYDILGAKGLIRVDYII-PADGEPVLLEINTTPGMTATSF 300

Query: 274 FPEMAAYAGYSFRELLLWMVEDASCLR 300
            P+    AG   ++++  ++ED    R
Sbjct: 301 IPQQVRAAGLDIKDVMTDIIEDELKNR 327


>gi|56416508|ref|YP_153582.1| D-alanine--D-alanine ligase [Anaplasma marginale str. St. Maries]
 gi|222474876|ref|YP_002563291.1| D-alanine--D-alanine ligase (ddlB) [Anaplasma marginale str.
           Florida]
 gi|81821304|sp|Q5PBK2|DDL_ANAMM RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|254767716|sp|B9KHS3|DDL_ANAMF RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|56387740|gb|AAV86327.1| D-alanine--D-alanine ligase [Anaplasma marginale str. St. Maries]
 gi|222419012|gb|ACM49035.1| D-alanine--D-alanine ligase (ddlB) [Anaplasma marginale str.
           Florida]
          Length = 334

 Score =  270 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 106/298 (35%), Positives = 168/298 (56%), Gaps = 5/298 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S EREVSL+ GK  A AL   G+  + +D++R     L  + PDL +N LHG
Sbjct: 14  VAVLCGGSSPEREVSLAGGKRVADALGRLGYNATVLDLNRESVGQLLAMAPDLVYNALHG 73

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT-MD 119
             GEDG V  +L++L +  THS + AS++ MDK+ +K V+ S G+      ++ +   + 
Sbjct: 74  VQGEDGCVSGLLDILGLACTHSHVAASSVGMDKVLTKHVLKSLGIDFPKFDVLTKEELLS 133

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
           ++ ++  P+VIKP++GGS++G+  I       LDL  + +    D++++E+YV G E+  
Sbjct: 134 AKEVLPYPFVIKPVRGGSTIGVHAIFSKSEY-LDL-SAHADTLEDRMIVEEYVSGQEVQT 191

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
            V    ++   E+   +   YSY+ KY      H+ PA +P DIY      A   HQ +G
Sbjct: 192 AVFLGRAIGTMELLF-EGRIYSYDAKYVEGLCEHIFPANLPYDIYNLTLEWALKLHQCLG 250

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPE-MAAYAGYSFRELLLWMVEDA 296
           C+ +SR DF +D  ++ +  LEIN  PGMT  S  PE +    G +F  ++  +V+DA
Sbjct: 251 CKTLSRVDFRYDVANKALKLLEINTHPGMTVSSTLPEVLWLRCGLNFDHVVDLIVQDA 308


>gi|239622538|ref|ZP_04665569.1| D-alanine-D-alanine ligase [Bifidobacterium longum subsp. infantis
           CCUG 52486]
 gi|239514535|gb|EEQ54402.1| D-alanine-D-alanine ligase [Bifidobacterium longum subsp. infantis
           CCUG 52486]
          Length = 395

 Score =  270 bits (692), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 86/280 (30%), Positives = 142/280 (50%), Gaps = 25/280 (8%)

Query: 39  DRSVGLVLAHLK-PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSK 97
           D  +  VL  L   D    VLHG +GEDG VQ +LE++ +PY   G+ ASA  MDK  +K
Sbjct: 113 DPEMHHVLTSLGHVDAVLPVLHGPYGEDGTVQGLLEMMGVPYVGCGVFASAACMDKHYTK 172

Query: 98  QVVSSCGVPVCPSILVNRFTMDSQHL--------ISPPYVIKPLKGGSSLGIIVIKKDQS 149
            V+ + G+P  P + V+     +  +        ++ P  +KP + GSS G+  ++K   
Sbjct: 173 VVLDAAGIPTAPGVTVDARNFTAADVLAEIEDAGLTYPLFVKPSRAGSSFGVTKVEKADD 232

Query: 150 IP-----LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP--------- 195
                  L    +++  H  ++L+EQ +DG E+ C V+   + D  E + P         
Sbjct: 233 RETQQDRLAAAIATAGEHDWKVLVEQGIDGHEIECAVLCPKAGDEPEASWPGEIVLDHQN 292

Query: 196 KSDFYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
              FY ++ KY   +++HV  PA +P+ + ++V+ +A  A +A+   G+SR D    P  
Sbjct: 293 DDQFYDFDSKYMDASASHVEVPANLPVSVLEDVRDVARRAFKAVDGAGLSRVDTFVTP-D 351

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             V   EIN  PG TP+S++P+     G S+ EL+  ++E
Sbjct: 352 GTVMVNEINTMPGFTPISMYPKAWDATGVSYTELITRLIE 391



 Score = 45.9 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 10/51 (19%), Positives = 21/51 (41%)

Query: 1  MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP 51
          + VL GG + E  +S  S      A++   F+   + + +    ++    P
Sbjct: 6  VVVLYGGRADEHSISCISTAGVLGAMDTERFEPIPVGITKDGKWIINGEDP 56


>gi|269958139|ref|YP_003327928.1| D-alanine/D-alanine ligase [Xylanimonas cellulosilytica DSM 15894]
 gi|269306820|gb|ACZ32370.1| D-alanine/D-alanine ligase [Xylanimonas cellulosilytica DSM 15894]
          Length = 349

 Score =  270 bits (692), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 99/311 (31%), Positives = 156/311 (50%), Gaps = 19/311 (6%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VL GG+S ER+VSL SG+  A AL   G  V+  DVD  +   L   +PD+ + +LHG
Sbjct: 39  VVVLAGGLSHERDVSLRSGRRVAEALRSVGVDVAVHDVDAQLLRYLDEHRPDVVWPLLHG 98

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG ++ +LEL  +PY  +G  AS L+ DK  +K+ + + G+     + + +     
Sbjct: 99  AGGEDGSLRDVLELAGVPYVGTGPRASRLAWDKPIAKERLQTAGLATPEWLTLPQELFRD 158

Query: 121 ----------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                           P V+KP +GGS+LG+  +     +   ++   +  +GD  LIE+
Sbjct: 159 LGAQGVLSIVAERFGLPVVVKPTRGGSALGVTRVTSKDGLARAMVDCFA--YGDSALIER 216

Query: 171 YVDGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE 226
            VDG+E+   V+    G  +L   EI V     Y ++ +Y+     +  PA++  D    
Sbjct: 217 AVDGVEIAVSVIDGMDGPVALPAVEIIV--DGPYDFDARYNPGRVEYFAPARLSPDQAAH 274

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           V  +A  AHQA+  R +SR+D +          LE+NV PGMT  S+ P+ A  AG+   
Sbjct: 275 VAGVAVAAHQALDLRHLSRTDLIL-QTDGTAQVLEVNVAPGMTETSLLPQAAVAAGHDLG 333

Query: 287 ELLLWMVEDAS 297
            L   +VE A+
Sbjct: 334 TLYRQVVEHAA 344


>gi|325860222|ref|ZP_08173347.1| D-ala D-ala ligase N-terminal domain protein [Prevotella denticola
           CRIS 18C-A]
 gi|327312693|ref|YP_004328130.1| D-ala D-ala ligase N-terminal domain-containing protein [Prevotella
           denticola F0289]
 gi|325482309|gb|EGC85317.1| D-ala D-ala ligase N-terminal domain protein [Prevotella denticola
           CRIS 18C-A]
 gi|326944185|gb|AEA20070.1| D-ala D-ala ligase N-terminal domain protein [Prevotella denticola
           F0289]
          Length = 332

 Score =  270 bits (692), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 88/326 (26%), Positives = 151/326 (46%), Gaps = 35/326 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40
           +A++ GG SSE +VS+ SG+   S  +   + +  +DV                    D 
Sbjct: 8   IAIVCGGDSSEHDVSMRSGQGLYSFFDKERYNIYIVDVKGIDWHVELPDGSLAPIDKNDF 67

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           S  +     + D A+  +HG  GE+G++Q   +LL +PY+ SG+L  A++ DK      +
Sbjct: 68  SFVMGGRRCEFDYAYITIHGQPGENGVMQGYFDLLHLPYSTSGVLVEAMTFDKYVLNNYL 127

Query: 101 SSCGVPVCPSILVNR----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
              GV V  SIL+ R       + +  +  P  +KP   GSS G+  +K    +   L  
Sbjct: 128 RGFGVKVADSILLRRGEPYDEAEIERRLGMPCFVKPAADGSSFGVSKVKNADQLAPAL-- 185

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDAS----LDVTEIAVPKSDFYSYELKYSSLNST 212
             ++   D++++E ++DG+E++ GV    +       TE+ V  ++F+ Y  KY+     
Sbjct: 186 RVAFMESDEVMVEGFMDGMEISQGVYKTKAKAVVFPATEV-VTSNEFFDYNAKYN-GQVQ 243

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF--DPLSRKVF-WLEINVQPGMT 269
            + PA++  +  + V       +  +   GI R D++   D     V   LEIN  PGMT
Sbjct: 244 EITPARMSPETARRVAAETSRIYDILHANGIIRIDYIISKDKDGNDVINMLEINTTPGMT 303

Query: 270 PVSIFPEMAAYAGYSFRELLLWMVED 295
             S  P+    AG   +E+L  +VE+
Sbjct: 304 ATSFIPQQVRAAGLDIKEVLSEIVEN 329


>gi|262276883|ref|ZP_06054676.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB)
           (D-Ala-D-Ala ligase B) [alpha proteobacterium HIMB114]
 gi|262223986|gb|EEY74445.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB)
           (D-Ala-D-Ala ligase B) [alpha proteobacterium HIMB114]
          Length = 305

 Score =  270 bits (692), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 115/301 (38%), Positives = 187/301 (62%), Gaps = 3/301 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + +LMGG S ER VS+ SGKAC  A++  G++V + D  +++   +  + PD+ FN LHG
Sbjct: 7   ILILMGGRSKERSVSIDSGKACYQAIKKIGYEVYKYDPIKNIKNNIKKINPDIVFNCLHG 66

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG +Q ILE L+IPYTHSG+ AS ++MDK++SK++     +      ++ + +   
Sbjct: 67  KYGEDGKIQKILEKLKIPYTHSGVKASEVAMDKIKSKKIFFKKKIITPNFKIIKKISDIK 126

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
             +    +++KP+  GSSLG+ +  +  +                L+ E Y++G E+   
Sbjct: 127 NKISKSKFILKPINEGSSLGVQIFPEYPTSKNFKKIKKLIKKYKILIQEPYIEGREIQTA 186

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYS-SLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
           V+G+ ++   EI +PK +FY Y+ KYS S  + H++P KIP  +  +++R+A +AH+++ 
Sbjct: 187 VLGNKAIGSVEI-IPKRNFYDYKAKYSLSAKTKHIIPPKIPKRLDNKIKRIALIAHKSLK 245

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
           CRG++RSDF   P + K++ LEIN QPGMT +S+ PE+A   G SF EL+ WM++DAS  
Sbjct: 246 CRGVTRSDFRVMP-NNKIYILEINTQPGMTNLSLVPEIAQNFGLSFTELVDWMIKDASIN 304

Query: 300 R 300
           R
Sbjct: 305 R 305


>gi|254994730|ref|ZP_05276920.1| D-alanine--D-alanine ligase (ddlB) [Anaplasma marginale str.
           Mississippi]
          Length = 334

 Score =  270 bits (692), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 106/298 (35%), Positives = 168/298 (56%), Gaps = 5/298 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S EREVSL+ GK  A AL   G+  + +D++R     L  + PDL +N LHG
Sbjct: 14  VAVLCGGSSPEREVSLAGGKRVADALGRLGYNATVLDLNRESVGQLLAMAPDLVYNALHG 73

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT-MD 119
             GEDG V  +L++L +  THS + AS++ MDK+ +K V+ S G+      ++ +   + 
Sbjct: 74  VQGEDGCVSGLLDILGLACTHSHVAASSVGMDKVLTKHVLKSLGIDFPKFDVLTKEELLS 133

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
           ++ ++  P+VIKP++GGS++G+  I       LDL  + +    D++++E+YV G E+  
Sbjct: 134 AKEVLPYPFVIKPVRGGSTIGVHAIFSKSEY-LDL-SAHADTLEDRMIVEEYVSGQEVQT 191

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
            V    ++   E+   +   YSY+ KY      H+ PA +P DIY      A   HQ +G
Sbjct: 192 AVFLGRAIGTMELLF-EGRIYSYDAKYVEGLCEHIFPANLPHDIYSLTLEWALKLHQCLG 250

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPE-MAAYAGYSFRELLLWMVEDA 296
           C+ +SR DF +D  ++ +  LEIN  PGMT  S  PE +    G +F  ++  +V+DA
Sbjct: 251 CKTLSRVDFRYDVANKALKLLEINTHPGMTVSSTLPEVLWLRCGLNFDHVVDLIVQDA 308


>gi|298376940|ref|ZP_06986894.1| D-alanine--D-alanine ligase [Bacteroides sp. 3_1_19]
 gi|301311072|ref|ZP_07217001.1| D-alanine--D-alanine ligase [Bacteroides sp. 20_3]
 gi|298265924|gb|EFI07583.1| D-alanine--D-alanine ligase [Bacteroides sp. 3_1_19]
 gi|300831135|gb|EFK61776.1| D-alanine--D-alanine ligase [Bacteroides sp. 20_3]
          Length = 330

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 83/327 (25%), Positives = 151/327 (46%), Gaps = 31/327 (9%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVS-------------------QID-VDR 40
           +A++ GG SSE  +SL S     S ++   + +                     ID  D 
Sbjct: 5   IAIVAGGDSSEIVISLKSADGIYSFIDKDKYNLYIAIVKRDEWAVILPSGEHTPIDKNDF 64

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           S          D A+  +HG  GEDG +Q   +++ +PY+  G+L SAL+ +K      +
Sbjct: 65  SFKENGVTRHFDFAYITIHGTPGEDGRLQGYFDMIGMPYSSCGMLVSALTFNKYVCNHYL 124

Query: 101 SSCGVPVCPSILVNRFTMDSQHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
              GV +  SI + +    +       +  P  +KP  GGSS G+  +K+  +I   + +
Sbjct: 125 KDFGVKIAASIHLFKGETITDEEVVTRLGLPIFVKPNDGGSSFGVTKVKELSAIQPAIAK 184

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVM---GDASLDVTEIAVPKSDFYSYELKYSSLNSTH 213
             ++  G ++++E ++DG E+TCG     G   +      V  ++F+ ++ KY+      
Sbjct: 185 --AFGEGREVILESFIDGTEVTCGCYKVEGKEVVFPLTEVVTDNEFFDFDAKYN-GQVDE 241

Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273
           + PA+I  ++ + +QR     +  +G +G+ R D++  P   +   LEIN  PGMT  S 
Sbjct: 242 ITPARISAELTELIQRKTSRIYDILGAKGLIRVDYII-PADGEPVLLEINTTPGMTATSF 300

Query: 274 FPEMAAYAGYSFRELLLWMVEDASCLR 300
            P+    AG   ++++  ++ED    R
Sbjct: 301 IPQQVRAAGLDIKDVMTDIIEDELKNR 327


>gi|50954660|ref|YP_061948.1| D-alanine:D-alanine ligase [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|50951142|gb|AAT88843.1| D-alanine:D-alanine ligase [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 297

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 93/282 (32%), Positives = 135/282 (47%), Gaps = 24/282 (8%)

Query: 33  VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
           V  +D  RS    L     DL F +LHG +GEDG +Q +LEL+ +PY  SG+LASAL MD
Sbjct: 24  VVAVDGTRSSLGDL-----DLVFPILHGPWGEDGTLQGMLELVGLPYVGSGVLASALGMD 78

Query: 93  KMRSKQVVSSCGVPVCPSILVNRFTM--------DSQHLISPPYVIKPLKGGSSLGIIVI 144
           K  +K V+   G+PV P   V  +           +   +  P  +KP + GSS+G+  +
Sbjct: 79  KHFTKTVLQQAGIPVAPWTTVTAYEWRTGADAVRAAARELGLPVFVKPARAGSSVGVGKV 138

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD------VTEIAVPKSD 198
           +  +   LD     ++   D++LIE  V G E+   V+G    +        EI V   D
Sbjct: 139 R--EWPELDAAMDIAFAEDDRVLIESGVVGREVEIAVLGGRPGESARASVAGEIVVSGRD 196

Query: 199 FYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
           FY Y  KY  +     V PAK+      +++ L   A  AIG  G++R DF         
Sbjct: 197 FYDYAAKYLDAPGIDLVCPAKLTDAELVQMRALGVRAFDAIGGEGLARVDFFLTAEG--F 254

Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
              EIN  PG TP+S+FP      G S+ EL+  +++ A   
Sbjct: 255 VVNEINTMPGFTPISMFPRCWQETGLSYPELIGELIQVALAR 296


>gi|47834368|gb|AAT38881.1| D-alanyl-D-alanine ligase [Amycolatopsis coloradensis]
          Length = 347

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 85/343 (24%), Positives = 147/343 (42%), Gaps = 46/343 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           + +L GG+S E  +S+ S       L+   ++   I + +    +L              
Sbjct: 6   IGILFGGLSEEHPISIKSALEVQKHLDLGKYEPYYIGITQGGAWMLCDGPAADWETSGNC 65

Query: 47  ----------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84
                                   +  DL   VLHG  GEDG +Q +LE+  IPY    +
Sbjct: 66  RPAVLSPDRGVHGLLVLDEGKYETIALDLVLPVLHGKLGEDGAMQGLLEISGIPYIGCDV 125

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
            +SA+ MDK  +  V+ + G+P     +V   T         P  +KP + GSS G+  +
Sbjct: 126 PSSAMCMDKSLTYSVIKAAGIPTPNFWIVTEDTDVDADAFDYPVFVKPARSGSSFGVSKV 185

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFY 200
              + +   L ++  +    ++LIE+ V G E+ C ++G+     + +   +A+    F 
Sbjct: 186 SGKEELAAALAEARQF--DSKVLIEEAVIGSEIGCSILGNDDELLAGECDRVALTHGFFK 243

Query: 201 SYE---LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
            ++    +  S NS+ ++PA I  +    VQ  A   ++A+GCRG++R D         V
Sbjct: 244 IHQEESPETGSENSSFIVPADISAESRAVVQDTAKAIYRALGCRGLARVDLFL-KEDGSV 302

Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
              E+N  PG+T  S +P M A AG S  +++  +   A   R
Sbjct: 303 VLNEVNTLPGLTSYSRYPRMMAAAGLSLGDVIDRLATLALARR 345


>gi|170722835|ref|YP_001750523.1| D-alanine--D-alanine ligase [Pseudomonas putida W619]
 gi|169760838|gb|ACA74154.1| D-alanine--D-alanine ligase [Pseudomonas putida W619]
          Length = 364

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 92/341 (26%), Positives = 153/341 (44%), Gaps = 48/341 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           +A++ GG SSE  V+L S     +AL   G +V  + +DR                    
Sbjct: 6   IALVFGGRSSEHSVALRSASMIHAALMALGHRVHCVGIDREGSWRYQGEPCQFPGEVDRS 65

Query: 46  --LAHLKP-------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84
             L  ++P                   DL F  LHG +GEDG +Q +  +  +P   SG+
Sbjct: 66  APLISIRPGHPSLSYTTQGSDTVEIAIDLLFPALHGRWGEDGTIQGLAAMCGLPCVGSGV 125

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVN---RFTMDSQHLISPPYVIKPLKGGSSLGI 141
           L SA+SMDK  +K+++ S G+ V P   +N    +    + L S    +KP   GSS+G+
Sbjct: 126 LGSAMSMDKDVTKRMLQSSGLVVGPWRAMNFMRPWEELVECLGSSTLFVKPANSGSSIGV 185

Query: 142 IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM----GDASLDVTEIAVPKS 197
             +            ++      ++L+E  + G E+ CGV+    G  +  V EI   + 
Sbjct: 186 SKVSNALEYAEAFAIAAC--QDAKVLVEAEICGREIECGVLELEEGLIASVVGEILKKEG 243

Query: 198 D-FYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255
             +Y Y+ KY S +   +  P+ +  DI + +Q L+  A + +  +G +R DF       
Sbjct: 244 QAYYDYQAKYDSKSGADIRVPSLLAPDIVERIQDLSVQAFRCLELKGYARVDFFLTE-DG 302

Query: 256 KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            +   E+N  PG T  S++P+M   +GY   +L+  +VE A
Sbjct: 303 AIILNEVNTLPGFTGSSMYPKMFECSGYPPEKLVGALVEYA 343


>gi|218265032|ref|ZP_03478644.1| hypothetical protein PRABACTJOHN_04354 [Parabacteroides johnsonii
           DSM 18315]
 gi|218221637|gb|EEC94287.1| hypothetical protein PRABACTJOHN_04354 [Parabacteroides johnsonii
           DSM 18315]
          Length = 326

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 83/322 (25%), Positives = 153/322 (47%), Gaps = 31/322 (9%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVS-------------------QID-VDR 40
           +A++ GG SSE  +SL S +   S L+   + V                     ID  D 
Sbjct: 6   IAIVAGGDSSEIVISLKSAEGIFSFLDKDKYNVYIAIIKRDEWAVKLPGGEHTPIDKNDF 65

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           S          D A+  +HG  GEDG +Q   +++ +PY+  G+  SAL+ +K      +
Sbjct: 66  SFRENGEVRHFDFAYITIHGTPGEDGRLQGYFDMIGMPYSSCGMFVSALTFNKFACNHYL 125

Query: 101 SSCGVPVCPSILVNRF----TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
              GV +  SI + +       +    +  P  +KP  GGSS G+  +K+  +I   + +
Sbjct: 126 KGFGVDIACSIHLFKGQTVTDEEVVSRLGLPVFVKPNDGGSSFGVTKVKEASAIQPAIAK 185

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI---AVPKSDFYSYELKYSSLNSTH 213
             +++ G +++IE ++DG E+TCG    A  +V       V  ++F+ ++ KY+      
Sbjct: 186 --AFSEGREVVIESFIDGTEVTCGCYKTADKEVVFPLTEVVTDNEFFDFDAKYN-GQVQE 242

Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273
           + PA++  ++ ++VQR     +  +G +G+ R D++  P   +   LE+N  PGMT  S 
Sbjct: 243 ITPARVSAELTEKVQRETSRIYDILGAKGLIRVDYII-PAGGEPKLLEVNTTPGMTATSF 301

Query: 274 FPEMAAYAGYSFRELLLWMVED 295
            P+    AG   ++++  ++E+
Sbjct: 302 IPQQVRAAGLEMKDVMTDIIEN 323


>gi|51598461|ref|YP_072649.1| D-alanyl-alanine synthetase A [Borrelia garinii PBi]
 gi|81610159|sp|Q662G4|DDL_BORGA RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|51573032|gb|AAU07057.1| D-alanine--D-alanine ligase [Borrelia garinii PBi]
          Length = 361

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 88/342 (25%), Positives = 161/342 (47%), Gaps = 50/342 (14%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDA-GFKVSQIDVDRSVGLV---------------- 45
           ++ GG+S E E+S  S  +   AL D   + +  + +D+  G+                 
Sbjct: 7   LIFGGVSFEHEISCKSAYSIYLALLDLNKYNIYPVYIDKCTGIWYLLDSVSDPPKLIDID 66

Query: 46  ----------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
                             +L  D+ F V+HG  GEDG +Q +L++++IP   +GI+ SA+
Sbjct: 67  VLPIVSLLPGIGIFSNNKNLDIDVVFPVVHGRTGEDGAIQGVLKVMDIPCIGAGIIGSAI 126

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPLKGGSSLG 140
           S +K   K ++ S  +P+ P I   ++           + +  +  P ++KP   GSS+G
Sbjct: 127 SSNKYFCKLLLKSFNIPLVPFIGFRQYDYFLDKEEVKRNVREALGYPVIVKPAVLGSSIG 186

Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS---LDVTEIAVPKS 197
           I V   +  I        +  +   +LIE++++  E+ C ++G+         E+ V   
Sbjct: 187 INVAYSENQIE--FFIEEALKYDLTILIEKFIEAREIECSIIGNEKIKIFSPGEVIVQDF 244

Query: 198 DFYSYELKYS--SLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
            FY Y+ KYS    NS     PA++  +    ++  AFL ++ +  RG++R DF  +  S
Sbjct: 245 IFYDYDAKYSVIPGNSIIFNIPAQLETNQLLSIKEYAFLVYKNLELRGMARVDFFVEKKS 304

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            K++  EIN  PG T +S+F +M ++ G  F++L+  ++  A
Sbjct: 305 GKIYLNEINTIPGFTDISMFAKMCSHDGLQFKDLVDNLINYA 346


>gi|315225622|ref|ZP_07867431.1| D-alanine-D-alanine ligase [Capnocytophaga ochracea F0287]
 gi|314944439|gb|EFS96479.1| D-alanine-D-alanine ligase [Capnocytophaga ochracea F0287]
          Length = 325

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 90/323 (27%), Positives = 153/323 (47%), Gaps = 34/323 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50
           +A++MGG S+E  VSL S    A  L    +    + +DR   + +              
Sbjct: 5   IAIIMGGYSNEAPVSLKSATVVAKHLNQDKYVPYPVRIDRDKWVYVDAQNNEHPIDKNDF 64

Query: 51  ----------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
                      D  FN +HG  GEDG +QA   L+ +P T   + ASAL+ +K     V+
Sbjct: 65  SVTVNGCKITFDAVFNAIHGTPGEDGYLQAYFNLIGLPLTGCSMYASALTFNKRDMLSVL 124

Query: 101 SSCGVPVCPSILVNRF----TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
              G+   PS  +N+     T D    +  P  +K  K GSS G+  + ++  +P  +  
Sbjct: 125 KPFGILSAPSYYLNKGEDYNTADIVAKVGLPCFVKANKSGSSFGVYKVYEEVQLP--MYI 182

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGD----ASLDVTEIAVPKSDFYSYELKYSSLNST 212
             ++   D++LIE ++ G E++ GV+        L +TEI V ++DF+ Y+ KY+   S 
Sbjct: 183 DKAFEVDDEILIESFLKGTEISIGVINYRGKIKVLPMTEI-VSENDFFDYDAKYN-GKSQ 240

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
            + PA++  ++  ++  LA   ++ +   G SRS+F+   +    + LE+N  PG++  S
Sbjct: 241 EITPARLSAEMTAKINALAERVYRLLKMEGFSRSEFII--VDDTPYLLEMNTTPGLSEAS 298

Query: 273 IFPEMAAYAGYSFRELLLWMVED 295
           + P+ A  AG S  EL    +E 
Sbjct: 299 LLPQQAKVAGISLEELFESEIER 321


>gi|225858876|ref|YP_002740386.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB)
           (D-Ala-D-Ala ligase B) [Streptococcus pneumoniae 70585]
 gi|225720907|gb|ACO16761.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB)
           (D-Ala-D-Ala ligase B) [Streptococcus pneumoniae 70585]
          Length = 321

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 103/323 (31%), Positives = 165/323 (51%), Gaps = 33/323 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           + VL GG+S EREVS +S K  + +L   G+ V  ID+ +     +  +           
Sbjct: 7   IVVLYGGLSEEREVSENSAKEISKSLLTLGYDVISIDLSQDCSYEIGEIEKSERGLNKQK 66

Query: 50  ------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSK 97
                       K D+ F   HG  GE+G +QAI ++ +I YT +  L++A+SMDK  SK
Sbjct: 67  VEIGSGIIDVCRKVDIVFLATHGGIGENGKLQAIFDVEKIDYTGNSFLSTAISMDKKLSK 126

Query: 98  QVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
            V SS G+    +++V+R   +       P VIKP++ GSS GI +++  +   +   + 
Sbjct: 127 IVASSVGIKCASNLMVDRIQAND-----FPIVIKPIRSGSSKGIKILQNKKQFDIYYKEH 181

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
                     +E+Y+ G E + G++G+  L V EI V K+ FY Y  KY+   +  V+PA
Sbjct: 182 PEL---GSFFVEKYIKGREFSVGILGETVLPVIEIKV-KNGFYDYNNKYTVGAAEEVVPA 237

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
           KI   +   +Q+ A+  H+A+G    SR+DF+ D     V+++E N  PGMT  S+ P+ 
Sbjct: 238 KISEKLTHTLQKSAYKIHKALGFNVYSRTDFIVDEK-GDVYFIESNSLPGMTKTSLLPQE 296

Query: 278 AAYAGYSFRELLLWMVEDASCLR 300
           A  AG  F  L   ++E +  +R
Sbjct: 297 AKAAGIDFPNLCERIIELSREIR 319


>gi|111115023|ref|YP_709641.1| D-alanine--D-alanine ligase [Borrelia afzelii PKo]
 gi|216263979|ref|ZP_03435973.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase) [Borrelia
           afzelii ACA-1]
 gi|122956408|sp|Q0SNW3|DDL_BORAP RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|110890297|gb|ABH01465.1| D-alanine--D-alanine ligase [Borrelia afzelii PKo]
 gi|215980023|gb|EEC20845.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase) [Borrelia
           afzelii ACA-1]
          Length = 361

 Score =  270 bits (690), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 88/342 (25%), Positives = 161/342 (47%), Gaps = 50/342 (14%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDA-GFKVS----------------------QIDVD 39
           ++ GG+S E E+S  S  +   AL D   + +                        ID D
Sbjct: 7   LIFGGVSFEHEISCKSAYSVYLALLDLNKYNIYSAYIDKCTGIWYLLDSVSDPPKPIDTD 66

Query: 40  RSVGLVL----------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
               + L           +L+ D+ F V+HG  GEDG +Q +L++++IP   +GI+ SA+
Sbjct: 67  VLPIVSLLPGFGIFSNNKNLEIDVVFPVVHGRTGEDGAIQGVLKVMDIPCVGAGIIGSAI 126

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPLKGGSSLG 140
           S +K   K ++ S  +P+ P I   ++           + + ++  P ++KP   GSS+G
Sbjct: 127 SSNKYFCKLLLKSFNIPIVPFIGFRQYDYSLDKEEIKRNVKEVLGYPVIVKPAVLGSSIG 186

Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS---LDVTEIAVPKS 197
           I V   +  I        +  +   ++IE++++  E+ C ++G+         E+ V   
Sbjct: 187 INVAYSENQIES--CIEEALKYDLTIVIEKFIEAREIECSIIGNEKMKIFSPGEVVVQDF 244

Query: 198 DFYSYELKYS--SLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
            FY Y+ KYS    NS     PA +  +    ++  AFL ++ +  RG++R DF  +  S
Sbjct: 245 IFYDYDAKYSVIPGNSIIFNIPAHLETNQLLSIKEYAFLVYKNLELRGMARVDFFVEKKS 304

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             ++  EIN  PG T +S+F +M ++ G  F++L+  +++ A
Sbjct: 305 GTIYLNEINTIPGFTDISMFSKMCSHDGLQFKDLIDNLIDYA 346


>gi|288925170|ref|ZP_06419105.1| D-alanine--D-alanine ligase [Prevotella buccae D17]
 gi|315607391|ref|ZP_07882390.1| D-alanine-D-alanine ligase [Prevotella buccae ATCC 33574]
 gi|288337935|gb|EFC76286.1| D-alanine--D-alanine ligase [Prevotella buccae D17]
 gi|315250948|gb|EFU30938.1| D-alanine-D-alanine ligase [Prevotella buccae ATCC 33574]
          Length = 331

 Score =  270 bits (690), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 88/326 (26%), Positives = 153/326 (46%), Gaps = 35/326 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40
           +A++ GG SSE +VSL S +   S  +   + V  +DV                    D 
Sbjct: 8   IAIVCGGDSSEHDVSLRSAQGLYSFFDKERYHVYIVDVKGTDWHVNLDNGDIVPIDKNDF 67

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           S       +  D A+  +HG  GE+G++Q   +L+ +PY+ SG+L  AL+ +K      +
Sbjct: 68  SFVQAGTTVYFDYAYITIHGQPGENGVMQGYFDLIHLPYSTSGVLVEALTFNKYVLNNYL 127

Query: 101 SSCGVPVCPSILVNR----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
            S GV V  S+L+ R       + +  +  P  +KP   GSS G+  +K+   +   L  
Sbjct: 128 RSFGVNVADSLLLRRGESYDEKEIERRLGMPCFVKPAADGSSFGVSKVKEADRLAPAL-- 185

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDAS----LDVTEIAVPKSDFYSYELKYSSLNST 212
             ++   D++++E ++DG+E++ G+         L  TE+ V  ++F+ Y+ KY+     
Sbjct: 186 RVAFMESDEVMVEGFLDGMEISQGIYKTKEKTVVLPATEV-VTSNEFFDYDAKYN-GQVK 243

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK---VFWLEINVQPGMT 269
            + PA++  +   +V       ++ +   GI R D++    S     V  LEIN  PGMT
Sbjct: 244 EITPARLSPETAAKVSAETARIYELLHANGIIRIDYIISKDSEGCDVVNMLEINTTPGMT 303

Query: 270 PVSIFPEMAAYAGYSFRELLLWMVED 295
             S  P+    AG   +E+L  +VE+
Sbjct: 304 ATSFIPQQVRAAGLDIKEVLTEIVEN 329


>gi|221217556|ref|ZP_03589026.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase) [Borrelia
           burgdorferi 72a]
 gi|224534092|ref|ZP_03674675.1| D-alanine--D-alanine ligase [Borrelia burgdorferi CA-11.2a]
 gi|225548522|ref|ZP_03769570.1| D-alanine--D-alanine ligase [Borrelia burgdorferi 94a]
 gi|225549817|ref|ZP_03770781.1| D-alanine--D-alanine ligase [Borrelia burgdorferi 118a]
 gi|221192619|gb|EEE18836.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase) [Borrelia
           burgdorferi 72a]
 gi|224512791|gb|EEF83159.1| D-alanine--D-alanine ligase [Borrelia burgdorferi CA-11.2a]
 gi|225369625|gb|EEG99074.1| D-alanine--D-alanine ligase [Borrelia burgdorferi 118a]
 gi|225370785|gb|EEH00220.1| D-alanine--D-alanine ligase [Borrelia burgdorferi 94a]
          Length = 361

 Score =  270 bits (690), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 86/342 (25%), Positives = 161/342 (47%), Gaps = 50/342 (14%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDA-GFKVSQIDVDR--------------------- 40
           ++ GG+S E E+S  S  +   AL D   + +  + +D+                     
Sbjct: 7   LIFGGVSFEHEISCKSAYSIYLALLDLNKYNIYPVYIDKCTGVWYLLDSVSDPPKPINTD 66

Query: 41  -----------SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
                       +     +L+ D+ F V+HG  GEDG +Q +L++++IP   +GI+ SA+
Sbjct: 67  VLPIVSLLPGFGIFSNNKNLEIDVVFPVVHGRTGEDGAIQGVLKVMDIPCVGAGIIGSAI 126

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPLKGGSSLG 140
           S +K   K ++ S  +P+ P I   +            + +  +  P ++KP   GSS+G
Sbjct: 127 SSNKYFCKLLLKSFDIPLVPFIGFRQHDYFLDKEEIKRNVKETLGYPVIVKPAVLGSSIG 186

Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS---LDVTEIAVPKS 197
           I V   +  I   + ++    +   ++IE++++  E+ C ++G+         E+ V   
Sbjct: 187 INVAYSENQIESFIKEAL--KYDLTIVIEKFIEAREIECSIIGNEKMKIFSPGEVVVQDF 244

Query: 198 DFYSYELKYS--SLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
            FY Y+ KYS    NS     PA +  +    ++  AFLA++ +  RG++R DF  +  S
Sbjct: 245 IFYDYDAKYSVIPGNSIIFNIPAHLETNQLLSIKEYAFLAYKNLELRGMARVDFFVEKKS 304

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             ++  EIN  PG T +S+F +M +  G  F++L+  +++ A
Sbjct: 305 GTIYLNEINTIPGFTDISMFAKMCSNDGLQFKDLVDNLIDYA 346


>gi|218249946|ref|YP_002374727.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase) [Borrelia
           burgdorferi ZS7]
 gi|226321518|ref|ZP_03797044.1| D-alanine--D-alanine ligase [Borrelia burgdorferi Bol26]
 gi|226729268|sp|B7J1D2|DDL_BORBZ RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|218165134|gb|ACK75195.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase) [Borrelia
           burgdorferi ZS7]
 gi|226232707|gb|EEH31460.1| D-alanine--D-alanine ligase [Borrelia burgdorferi Bol26]
          Length = 361

 Score =  270 bits (690), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 86/342 (25%), Positives = 162/342 (47%), Gaps = 50/342 (14%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDA-GFKVSQIDVDR--------------------- 40
           ++ GG+S E E+S  S  +   AL D   + +  + +D+                     
Sbjct: 7   LIFGGVSFEHEISCKSAYSIYLALLDLNKYNIYPVYIDKCTGVWYLLDSVSDPPKPINTD 66

Query: 41  -----------SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
                       +     +L+ D+ F V+HG  GEDG +Q +L++++IP   +GI+ SA+
Sbjct: 67  VLPIVSLLPGFGIFSNNKNLEIDVVFPVVHGRTGEDGAIQGVLKVMDIPCVGAGIIGSAI 126

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPLKGGSSLG 140
           S +K   K ++ S  +P+ P I   +            + + ++  P ++KP   GSS+G
Sbjct: 127 SSNKYFCKLLLKSFDIPLVPFIGFRQHDYFLDKEEIKKNVKEVLGYPVIVKPAVLGSSIG 186

Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS---LDVTEIAVPKS 197
           I V   +  I   + ++    +   ++IE++++  E+ C ++G+         E+ V   
Sbjct: 187 INVAYSENQIESFIKEAL--KYDLTIVIEKFIEAREIECSIIGNEKMKIFSPGEVVVQDF 244

Query: 198 DFYSYELKYS--SLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
            FY Y+ KYS    NS     PA +  +    ++  AFLA++ +  RG++R DF  +  S
Sbjct: 245 IFYDYDAKYSVIPGNSIIFNIPAHLETNQLLSIKEYAFLAYKNLELRGMARVDFFVEKKS 304

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             ++  EIN  PG T +S+F +M +  G  F++L+  +++ A
Sbjct: 305 GTIYLNEINTIPGFTDISMFAKMCSNDGLQFKDLVDNLIDYA 346


>gi|225552328|ref|ZP_03773268.1| D-alanine--D-alanine ligase [Borrelia sp. SV1]
 gi|225371326|gb|EEH00756.1| D-alanine--D-alanine ligase [Borrelia sp. SV1]
          Length = 361

 Score =  270 bits (690), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 86/342 (25%), Positives = 162/342 (47%), Gaps = 50/342 (14%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDA-GFKVSQIDVDR--------------------- 40
           ++ GG+S E E+S  S  +   AL D   + +  + +D+                     
Sbjct: 7   LIFGGVSFEHEISCKSAYSIYLALLDLNKYNIYPVYIDKCTGVWYLLDSVSNPPKPINTD 66

Query: 41  -----------SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
                       +     +L+ D+ F V+HG  GEDG +Q +L++++IP   +GI+ SA+
Sbjct: 67  VLPIVSLLPGLGIFSNNKNLEIDVVFPVVHGRTGEDGAIQGVLKVMDIPCVGAGIIGSAI 126

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPLKGGSSLG 140
           S +K   K ++ S  +P+ P I   +            + + ++  P ++KP   GSS+G
Sbjct: 127 SSNKYFCKLLLKSFDIPLVPFIGFRQHDYFLDKEEIKRNVKEVLGYPVIVKPAVLGSSIG 186

Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS---LDVTEIAVPKS 197
           I V   +  I   + ++    +   ++IE++++  E+ C ++G+         E+ V   
Sbjct: 187 INVAYSENQIESFIKEAL--RYDLAIVIEKFIEAREIECSIIGNEKMKIFSPGEVVVQDF 244

Query: 198 DFYSYELKYS--SLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
            FY Y+ KYS    NS     PA +  +    ++  AFLA++ +  RG++R DF  +  S
Sbjct: 245 IFYDYDAKYSVIPGNSIIFNIPAHLETNQLLSIKEYAFLAYKNLELRGMARVDFFVEKKS 304

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             ++  EIN  PG T +S+F +M +  G  F++L+  +++ A
Sbjct: 305 GTIYLNEINTIPGFTDISMFAKMCSNDGLQFKDLVDNLIDYA 346


>gi|195941931|ref|ZP_03087313.1| D-alanine--D-alanine ligase (ddlA) [Borrelia burgdorferi 80a]
 gi|312148040|gb|ADQ30699.1| D-alanine--D-alanine ligase [Borrelia burgdorferi JD1]
          Length = 361

 Score =  270 bits (690), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 86/342 (25%), Positives = 162/342 (47%), Gaps = 50/342 (14%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDA-GFKVSQIDVDR--------------------- 40
           ++ GG+S E E+S  S  +   AL D   + +  + +D+                     
Sbjct: 7   LIFGGVSFEHEISCKSAYSIYLALLDLNKYNIYPVYIDKCTGVWYLLDSVSDPPKPINTD 66

Query: 41  -----------SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
                       +     +L+ D+ F V+HG  GEDG +Q +L++++IP   +GI+ SA+
Sbjct: 67  VLPIVSLLPGFGIFSNNKNLEIDVVFPVVHGRTGEDGAIQGVLKVMDIPCVGAGIIGSAI 126

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPLKGGSSLG 140
           S +K   K ++ S  +P+ P I   +            + + ++  P ++KP   GSS+G
Sbjct: 127 SSNKYFCKLLLKSFDIPLVPFIGFRQHDYFLDKEEIKRNVKEVLGYPVIVKPAVLGSSIG 186

Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS---LDVTEIAVPKS 197
           I V   +  I   + ++    +   ++IE++++  E+ C ++G+         E+ V   
Sbjct: 187 INVAYSENQIESFIKEAL--KYDLTIVIEKFIEAREIECSIIGNEKMKIFSPGEVVVQDF 244

Query: 198 DFYSYELKYS--SLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
            FY Y+ KYS    NS     PA +  +    ++  AFLA++ +  RG++R DF  +  S
Sbjct: 245 IFYDYDAKYSVIPGNSIIFNIPAHLETNQLLSIKEYAFLAYKNLELRGMARVDFFVEKKS 304

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             ++  EIN  PG T +S+F +M +  G  F++L+  +++ A
Sbjct: 305 GTIYLNEINTIPGFTDISMFAKMCSNDGLQFKDLVDNLIDYA 346


>gi|325001011|ref|ZP_08122123.1| D-alanine--D-alanine ligase [Pseudonocardia sp. P1]
          Length = 311

 Score =  270 bits (690), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 104/312 (33%), Positives = 158/312 (50%), Gaps = 18/312 (5%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGN 61
           AVL GG+S EREVSL SG+  A AL   G  V + DVD ++   L   +PD+    LHG 
Sbjct: 2   AVLAGGLSHEREVSLRSGRRLAGALRANGVDVREWDVDSALLERLHSDRPDVVAVALHGG 61

Query: 62  FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ 121
            GE+G VQ ILELL+IP+  +   A   + DK   K  +   G+     + +   T    
Sbjct: 62  EGENGAVQQILELLQIPFVGTPSGACRRAWDKPSVKAELVRAGLTTPDWVALPHSTFREL 121

Query: 122 ----------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P V+KP +GGS+LG+ V++    +P  ++  SS+ + D +L EQ+
Sbjct: 122 GAQGVLGAIVDRLGLPLVLKPDQGGSALGVQVVRSADDLPSAMV--SSFAYADTVLAEQF 179

Query: 172 VDGIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227
           V G E+   V+ D     +L   E+ VP S FY Y  +Y+   +T   PA++  D+ + +
Sbjct: 180 VAGTEVAVSVVHDGDEARALPPVEVEVP-SGFYDYTSRYTPGAATFHCPARLSSDVQQTL 238

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287
              A  AH+ +G R +SR D + D    +V  LE+NV PG+T  S+ P   A  G     
Sbjct: 239 AETALTAHRLLGMRDVSRMDAIVDG-DGRVHVLEMNVSPGLTDTSLLPTAVAADGSDLAT 297

Query: 288 LLLWMVEDASCL 299
           +   +V+ A+  
Sbjct: 298 VYQALVDRAATR 309


>gi|312149254|gb|ADQ29325.1| D-alanine--D-alanine ligase [Borrelia burgdorferi N40]
          Length = 361

 Score =  269 bits (689), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 87/342 (25%), Positives = 161/342 (47%), Gaps = 50/342 (14%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDA-GFKVSQIDVDR--------------------- 40
           ++ GG+S E E+S  S  +   AL D   + +  + +D+                     
Sbjct: 7   LIFGGVSFEHEISCKSAYSIYLALLDLNKYNIYPVYIDKCTGVWYLLDSVSDPPKPINTD 66

Query: 41  -----------SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
                       +     +LK D+ F V+HG  GEDG +Q +L++++IP   +GI+ SA+
Sbjct: 67  VLPIVSLLPGFGIFSNNKNLKIDVVFPVVHGRTGEDGAIQGVLKVMDIPCVGAGIIGSAI 126

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPLKGGSSLG 140
           S +K   K ++ S  +P+ P I   +            + +  +  P ++KP   GSS+G
Sbjct: 127 SSNKYFCKLLLKSFDIPLVPFIGFRQHDYFLDKEEIKRNVKEALGYPVIVKPAVLGSSIG 186

Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS---LDVTEIAVPKS 197
           I V   +  I   + ++    +   ++IE++++  E+ C ++G+         E+ V   
Sbjct: 187 INVAYSENQIESFIKEAL--KYDLTIVIEKFIEVREIECSIIGNEKMKIFSPGEVVVQDF 244

Query: 198 DFYSYELKYS--SLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
            FY Y+ KYS    NS     PA +  +    ++  AFLA++ +  RG++R DF  +  S
Sbjct: 245 IFYDYDAKYSVIPGNSIIFNIPAHLETNQLLSIKEYAFLAYKNLELRGMARVDFFVEKKS 304

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             ++  EIN  PG T +S+F +M +  G  F++L+  +++ A
Sbjct: 305 GTIYLNEINTIPGFTDISMFAKMCSNDGLQFKDLVDNLIDYA 346


>gi|227548098|ref|ZP_03978147.1| D-alanyl-alanine synthetase A [Corynebacterium lipophiloflavum DSM
           44291]
 gi|227079824|gb|EEI17787.1| D-alanyl-alanine synthetase A [Corynebacterium lipophiloflavum DSM
           44291]
          Length = 326

 Score =  269 bits (689), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 84/260 (32%), Positives = 136/260 (52%), Gaps = 15/260 (5%)

Query: 51  PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            D+AF VLHG +GEDG +Q   EL  +PY   G+LASA +MDK  +K++VSS G+ V   
Sbjct: 68  VDVAFPVLHGMYGEDGTIQGFFELSGLPYVGPGVLASACAMDKEYTKRLVSSAGIAVTDE 127

Query: 111 ILVNRF---TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL 167
           ++V R       ++  +  P  +KP +GGSS+G+  +     +  D   + +     + +
Sbjct: 128 VIVRRGESLDDATKQRLGLPVFVKPARGGSSIGVSKVSDWAEL--DDAIAVALQSDSKAI 185

Query: 168 IEQYVDGIELTCGVMG------DASLDVTEIAVPKS--DFYSYELKYSSLNSTHVLPAKI 219
           +E  + G E+  GV+       +AS+  T          FY +E KY     T  +PA  
Sbjct: 186 VEAELVGDEVEVGVLEYPDGRVEASVPATLNGTEDGEEGFYGFETKYLDEGVTATIPAPY 245

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279
             ++ ++++ LA  A +A+GCRG+SR DF            EIN  PG TP+S++P++  
Sbjct: 246 SEEVTQQIRSLAITAFRALGCRGLSRVDFFLTERG--PVLNEINTMPGFTPISMYPQVWK 303

Query: 280 YAGYSFRELLLWMVEDASCL 299
            +G S+ ELL  +++ A   
Sbjct: 304 ASGVSYPELLHTLIQTALAR 323


>gi|82658574|gb|ABB88463.1| DdlN [Amycolatopsis coloradensis]
          Length = 347

 Score =  269 bits (689), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 85/343 (24%), Positives = 147/343 (42%), Gaps = 46/343 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           + +L GG+S E  +S+ S       L+   ++   I + +    +L              
Sbjct: 6   IGILFGGLSEEHPISIKSALEVQKHLDLGKYEPYYIGITQGGAWMLCDGPAADWETSGNC 65

Query: 47  ----------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84
                                   +  DL   VLHG  GEDG +Q +LE+  IPY    +
Sbjct: 66  RPAVLSPDRGVHGLLVLDEGKYETIALDLVLPVLHGKLGEDGAMQGLLEISGIPYIGCDV 125

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
            +SA+ MDK  +  V+ + G+P     +V   T         P  +KP + GSS G+  +
Sbjct: 126 PSSAMCMDKSLTYSVIKAAGIPTPNFWIVTEDTDVDADAFDYPVFVKPARSGSSFGVSKV 185

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFY 200
              + +   L ++  +    ++LIE+ V G E+ C ++G+     + +   +A+    F 
Sbjct: 186 SGKEELAAALAEAREF--DSKVLIEEAVIGSEIGCSILGNDDELLAGECDRVALTHGFFK 243

Query: 201 SYE---LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
            ++    +  S NS+ ++PA I  +    VQ  A   ++A+GCRG++R D         V
Sbjct: 244 IHQEESPETGSENSSFIVPADISAESRAVVQDTAKAIYRALGCRGLARVDLFL-KEDGSV 302

Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
              E+N  PG+T  S +P M A AG S  +++  +   A   R
Sbjct: 303 VLNEVNTLPGLTSYSRYPRMMAAAGLSLGDVIDRLATLALARR 345


>gi|228472127|ref|ZP_04056893.1| D-ala D-ala ligase [Capnocytophaga gingivalis ATCC 33624]
 gi|228276330|gb|EEK15054.1| D-ala D-ala ligase [Capnocytophaga gingivalis ATCC 33624]
          Length = 325

 Score =  269 bits (689), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 92/324 (28%), Positives = 156/324 (48%), Gaps = 34/324 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40
           +A+LMGG S E  VSL S    A  L+ + +   +I +                    D 
Sbjct: 4   IAILMGGFSQEAAVSLQSAATVAEYLDKSKYTAYRILITKEKWVYTDTLGQEILVDKNDF 63

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           S+ L    +  D AFN +HG  GEDG +QA   L+ +P T   + ASAL+ +K     V+
Sbjct: 64  SLTLEGKKITFDCAFNAIHGTPGEDGNLQAYFALVGVPITGCSMYASALTFNKRDMLSVL 123

Query: 101 SSCGVPVCPSILVNR----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
              G+P   +  +N+     T +    +  P  +K  + GSS+G+     ++ I   +  
Sbjct: 124 KPYGIPRAKAYYLNQGEPFSTREIIKTVGLPCFVKANRSGSSIGVFKAYDEKDIDQAI-- 181

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNST 212
             ++    +++IE+++ G E++ GV+        L +TEI V ++DF+ YE KY    S 
Sbjct: 182 EKAFEVDTEVIIEEFLKGTEVSVGVITYHGKKRVLPITEI-VSENDFFDYEAKY-QGKSK 239

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
            + PA++  +  K+V+ +A   +  +  +G SRS+++   +      LE+N  PG+T  S
Sbjct: 240 EITPARLSEEERKKVEEVALRVYNLLQMKGFSRSEYIL--VGGVPHLLEMNTTPGLTKNS 297

Query: 273 IFPEMAAYAGYSFRELLLWMVEDA 296
           I P+ A  AG S   L    +E+A
Sbjct: 298 ILPQQAKAAGISLTNLFDNAIEEA 321


>gi|317504078|ref|ZP_07962081.1| D-alanine-D-alanine ligase [Prevotella salivae DSM 15606]
 gi|315664820|gb|EFV04484.1| D-alanine-D-alanine ligase [Prevotella salivae DSM 15606]
          Length = 331

 Score =  269 bits (689), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 88/326 (26%), Positives = 151/326 (46%), Gaps = 35/326 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40
           +A++ GG SSE +VSL S +   S  +   + V  +DV                    D 
Sbjct: 8   IAIVCGGDSSEHDVSLRSAQGLYSFFDKQKYNVFIVDVKGTDWHVHLDSGATVAIDKNDF 67

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           S  L    +  D A+  +HG  GE+G++Q   +L+ +PY+ SG+L  A++ DK      +
Sbjct: 68  SFKLDGKSVFFDYAYITIHGQPGENGVMQGYFDLIHLPYSTSGVLVEAMTFDKYVLNNYL 127

Query: 101 SSCGVPVCPSILVNRFTMDSQHLI----SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
              GV V  S+L+ R     +  I      P  +KP   GSS G+  +K    +   L +
Sbjct: 128 RGFGVRVADSMLLRRGEEYDEAKIEARFGMPCFVKPAADGSSFGVSKVKNADQLAPALRK 187

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDAS----LDVTEIAVPKSDFYSYELKYSSLNST 212
             ++   D+++IE +++G+E++ G+            TE+ V K++F+ Y+ KY+     
Sbjct: 188 --AFMESDEVMIEGFLNGVEISQGIYKTREKMVVFPATEV-VTKNEFFDYDAKYN-GQVQ 243

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF--DPLSRKVF-WLEINVQPGMT 269
            + PA++  +   +V       +  +   GI R D++   D     V   LEIN  PGMT
Sbjct: 244 EITPARLSKETADKVAAETSRIYDILHANGIIRIDYIISKDAEGNDVVNMLEINTTPGMT 303

Query: 270 PVSIFPEMAAYAGYSFRELLLWMVED 295
             S  P+    AG   +++L  +VE+
Sbjct: 304 VTSFIPQQVRAAGLDIKDVLSDIVEN 329


>gi|160947009|ref|ZP_02094212.1| hypothetical protein PEPMIC_00971 [Parvimonas micra ATCC 33270]
 gi|158447393|gb|EDP24388.1| hypothetical protein PEPMIC_00971 [Parvimonas micra ATCC 33270]
          Length = 357

 Score =  269 bits (689), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 88/339 (25%), Positives = 155/339 (45%), Gaps = 47/339 (13%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR---------------------- 40
           +L GG S+E E+S+ + K+  + L+   +K+  I VD+                      
Sbjct: 6   LLYGGKSTEHEISVLTAKSVINNLDRKKYKIFPIYVDKCGRWNYLGKNTKNIENEKELVV 65

Query: 41  ----SVGLVLAHLKP-DLA------FNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
               +V   +++    D        F  +HG F EDG +Q   +++++ Y  + +L+SA+
Sbjct: 66  EGFGNVADSISNFFAKDFVNENAIFFPAMHGTFSEDGTIQGFFDIMDLTYVGNNVLSSAV 125

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ---------HLISPPYVIKPLKGGSSLG 140
            MDK  +  V +  G+      LV ++  +             I     IKP   GSS+G
Sbjct: 126 CMDKGTANDVFAGNGILQPEYYLVTKYEFNKNKDLQIKNILEKIGEVSFIKPCNAGSSVG 185

Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK--SD 198
           +  + K + I   L++  ++ + +++L+E+ V G EL   VMG+  L  +     K   +
Sbjct: 186 VTKVTKKEEIEPALIE--AFKYDNRVLVEEAVIGDELQVLVMGNNILKASLPGGVKVTRE 243

Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
           F+ YE KY    + H++P  +  +  KE+Q +A  A+    C+G +R D       RK+ 
Sbjct: 244 FFDYEAKYFDETTDHIIPWDLTDEEIKEIQSVAKRAYAVTNCKGFARVDIFVRDSDRKML 303

Query: 259 WLEINVQPGMTPVSIFPEM-AAYAGYSFRELLLWMVEDA 296
             EIN  PGMT VS+ P M       ++ + L  ++E A
Sbjct: 304 VNEINTIPGMTAVSMAPAMYMKTFKKTYSDFLDELIELA 342


>gi|261749571|ref|YP_003257257.1| D-alanyl-alanine synthetase A [Blattabacterium sp. (Periplaneta
           americana) str. BPLAN]
 gi|261497664|gb|ACX84114.1| D-alanyl-alanine synthetase A [Blattabacterium sp. (Periplaneta
           americana) str. BPLAN]
          Length = 331

 Score =  269 bits (689), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 90/322 (27%), Positives = 157/322 (48%), Gaps = 35/322 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------DRSVGLVLAH---- 48
           +A++MGG + E  +SL SG+     L    F+V +I +        D++      +    
Sbjct: 4   IAIVMGGYTEESVISLKSGEVVYKNLSKEEFEVYKIYLFIEKWILKDKNNKEYPVNKQDF 63

Query: 49  ---------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
                    LK D  FN +HG  GEDG++QA   LL+IPYT      ++++ +K      
Sbjct: 64  TVRITNDQILKFDCVFNAIHGTPGEDGVLQAYFHLLKIPYTGCHFHHASVTFNKKYCLTF 123

Query: 100 VSSCGVPVCPSILVNR----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
           +   G+   PS  +N+            +  P  +KP + GSSLGI  +   Q   L   
Sbjct: 124 LKEFGIKTAPSFFLNKNQSFCEKKILKKVGLPCFVKPNRSGSSLGISKVY--QERELAKA 181

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNS 211
              ++    ++++E ++ G E++ GV+        L +TEI + ++DF+ +E KYS   S
Sbjct: 182 IEHAFRKDQEIIVESFLKGTEVSVGVISWNQDIKVLPITEI-ISRNDFFDFESKYS-GKS 239

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271
             + PA++   + K++++LA   ++ +   GISRS+++   ++   F+LEIN  PG++  
Sbjct: 240 QEITPARLLPSLEKKIKKLAKNVYEILNLSGISRSEYIL--VNGDPFFLEINTIPGLSEE 297

Query: 272 SIFPEMAAYAGYSFRELLLWMV 293
           SI P+    AG S  EL    +
Sbjct: 298 SILPKQLKIAGISLSELFKKNI 319


>gi|20808895|ref|NP_624066.1| D-alanine-D-alanine ligase and related ATP-grasp enzyme
           [Thermoanaerobacter tengcongensis MB4]
 gi|39930907|sp|Q8R778|DDL_THETN RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|20517553|gb|AAM25670.1| D-alanine-D-alanine ligase and related ATP-grasp enzymes
           [Thermoanaerobacter tengcongensis MB4]
          Length = 389

 Score =  269 bits (689), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 92/363 (25%), Positives = 151/363 (41%), Gaps = 73/363 (20%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           +AV+ GG S E EVS+ +G      +    ++   + V R                    
Sbjct: 4   VAVMFGGKSVEHEVSIITGLQVIENMNKEKYEPIPVYVGRDGRWYTGKGLLDISNYKDIP 63

Query: 49  ------------------------------------LKPDLAFNVLHGNFGEDGLVQAIL 72
                                               +  D+ F   HG  GEDG +Q + 
Sbjct: 64  SLLKKCEQVVLPPVPGLNKLYYYPFRKKFMSKEYDYIDVDVIFPAFHGTHGEDGTMQGLF 123

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHL 123
           +L  IPY  SG++ SA  MDK+  K +  +  +P+   +   R   +          +  
Sbjct: 124 QLANIPYVGSGVVGSATGMDKVIMKDIFKANNLPIVNYLWFLRKEYEKNKEAMLDLIESK 183

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVM 182
           +  P  +KP   GSS+GI   K    +   +  +  ++   ++++E+ V D +E+ C VM
Sbjct: 184 LKYPMFVKPANLGSSIGISKAKNRDELFDAIEIAIYYDR--KIIVEEAVKDPMEVNCSVM 241

Query: 183 G---DASLDVTEIAVPKSDFYSYELKY------SSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           G   D  + + E+ VP  +F SY+ KY         ++T  +PA IP +  KE+Q LA  
Sbjct: 242 GIDRDLEISLCEMPVPWEEFLSYQDKYMRKEKGGKGSTTRQIPAPIPEEKTKEIQELAKK 301

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
             Q + C G++R DFL +  + KV+  EIN  PG    S    +    G SF +L+  ++
Sbjct: 302 VFQILDCSGLARIDFLLEKETMKVYVNEINTIPG----SFAFYLWKPLGISFEKLIDRLI 357

Query: 294 EDA 296
           E A
Sbjct: 358 EYA 360


>gi|255002846|ref|ZP_05277810.1| D-alanine--D-alanine ligase (ddlB) [Anaplasma marginale str. Puerto
           Rico]
          Length = 333

 Score =  269 bits (689), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 109/298 (36%), Positives = 173/298 (58%), Gaps = 6/298 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S EREVSL+ GK  A AL   G+  + +D+++SVG +LA + PDL +N LHG
Sbjct: 14  VAVLCGGSSPEREVSLAGGKRVADALGRLGYNATVLDLNKSVGQLLA-MAPDLVYNALHG 72

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-D 119
             GEDG V  +L++L +  THS + AS++ MDK+ +K V+ S G+      ++ +  +  
Sbjct: 73  VQGEDGCVSGLLDILGLACTHSHVAASSVGMDKVLTKHVLKSLGIDFPKFDVLTKEELLS 132

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
           ++ ++  P+VIKP++GGS++G+  I       LDL  + +    D++++E+YV G E+  
Sbjct: 133 AKEVLPYPFVIKPVRGGSTIGVHAIFSKSEY-LDL-SAHADTLEDRMIVEEYVSGQEVQT 190

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
            V    ++   E+   +   YSY+ KY      H+ PA +P DIY      A   HQ +G
Sbjct: 191 AVFLGRAIGTMELLF-EGRIYSYDAKYVEGLCEHIFPANLPYDIYNLTLEWALKLHQCLG 249

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPE-MAAYAGYSFRELLLWMVEDA 296
           C+ +SR DF +D  ++ +  LEIN  PGMT  S  PE +    G +F  ++  +V+DA
Sbjct: 250 CKTLSRVDFRYDVANKALKLLEINTHPGMTVSSTLPEVLWLRCGLNFDHVVDLIVQDA 307


>gi|284993431|ref|YP_003411986.1| D-alanine--D-alanine ligase [Geodermatophilus obscurus DSM 43160]
 gi|284066677|gb|ADB77615.1| D-alanine--D-alanine ligase [Geodermatophilus obscurus DSM 43160]
          Length = 329

 Score =  269 bits (688), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 102/314 (32%), Positives = 163/314 (51%), Gaps = 19/314 (6%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGN 61
            VL GG++ EREVSLSSG   A  L  AG +    D D  +   LA    D  F  LHG 
Sbjct: 20  VVLAGGLNVEREVSLSSGTQVAEELARAGVEAELRDADAELLPGLAAAPADAVFIALHGA 79

Query: 62  FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ 121
            GEDG ++A+L+L  +PY  S   +  L+ DK  +K VV S GV     + +   T    
Sbjct: 80  TGEDGALRAVLDLAGVPYVGSPAASCRLAWDKPAAKSVVRSAGVTTPDWVALPHSTFREL 139

Query: 122 ----------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P ++KP  GGS+LG+  + + + +P  ++  S + +GD +++E++
Sbjct: 140 GAGAVLDLIVARLGLPLMVKPASGGSALGVQKVSRVEDLPAAMV--SCFAYGDTVMVERF 197

Query: 172 VDGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227
           VDG+EL   V+    G  +L   EIA P+S  + Y  +Y+   + +  PA++  ++  + 
Sbjct: 198 VDGVELALSVVDLGEGPQALPAVEIA-PESGVFDYTSRYTPGLTEYHAPARVSDEVAGKA 256

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287
             LA   H+A+G   +SR+D +  P   +V +LE+NV PG+T  S+FP     +G S  +
Sbjct: 257 AELAVQVHRALGLADLSRTDAIVGP-DGEVHFLEVNVSPGLTRTSMFPMAVEASGSSLGD 315

Query: 288 LLLWMV-EDASCLR 300
           +L  ++   AS  R
Sbjct: 316 VLAGLLTRRASTTR 329


>gi|291456019|ref|ZP_06595409.1| D-alanine--D-alanine ligase [Bifidobacterium breve DSM 20213]
 gi|291382428|gb|EFE89946.1| D-alanine--D-alanine ligase [Bifidobacterium breve DSM 20213]
          Length = 397

 Score =  269 bits (688), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 86/280 (30%), Positives = 143/280 (51%), Gaps = 25/280 (8%)

Query: 39  DRSVGLVLAHLK-PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSK 97
           D  +  VL  L   D    VLHG +GEDG VQ +LE++ +PY   G+ ASA  MDK  +K
Sbjct: 115 DPEIHHVLTSLGHVDAVLPVLHGPYGEDGTVQGLLEMMGVPYVGCGVFASAACMDKHYTK 174

Query: 98  QVVSSCGVPVCPSILVNRFTMDSQHL--------ISPPYVIKPLKGGSSLGIIVIKKDQS 149
            V+++ G+P  P I+V+     +  +        ++ P  +KP + GSS G+  + K + 
Sbjct: 175 VVLNAAGIPTAPGIMVDARAFTAADVVAQIEVAGLAYPLFVKPSRAGSSFGVTKVDKAED 234

Query: 150 IPL-----DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP--------- 195
           +           +++  H  ++LIEQ +DG E+ C V+   + D  E + P         
Sbjct: 235 LETQQDRVAAAIATAGEHDWKVLIEQGIDGREIECAVLCPKAGDEPEASWPGEIVLDHQN 294

Query: 196 KSDFYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
              FY ++ KY   +++HV  PA +P+ + ++V+ +A  A +A+   G+SR D    P  
Sbjct: 295 DDQFYDFDSKYMDASASHVEVPANLPVSVLEDVRDVARRAFKAVDGAGLSRVDTFVTP-D 353

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             V   EIN  PG TP+S++P+     G  + EL+  ++E
Sbjct: 354 GTVMVNEINTMPGFTPISMYPKAWDATGVGYTELITRLIE 393



 Score = 47.8 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 10/51 (19%), Positives = 22/51 (43%)

Query: 1  MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP 51
          + VL GG + E  +S  S     +A++   F+   + + +    ++    P
Sbjct: 8  IVVLYGGRADEHSISCISTAGVLAAMDTERFEPIPVGITKDGKWIIDGEDP 58


>gi|255003979|ref|ZP_05278780.1| D-alanine--D-alanine ligase (ddlB) [Anaplasma marginale str.
           Virginia]
          Length = 333

 Score =  269 bits (688), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 109/298 (36%), Positives = 173/298 (58%), Gaps = 6/298 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S EREVSL+ GK  A AL   G+  + +D+++SVG +LA + PDL +N LHG
Sbjct: 14  VAVLCGGSSPEREVSLAGGKRVADALGRLGYNATVLDLNKSVGQLLA-MAPDLVYNALHG 72

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-D 119
             GEDG V  +L++L +  THS + AS++ MDK+ +K V+ S G+      ++ +  +  
Sbjct: 73  VQGEDGCVSGLLDILGLACTHSHVAASSVGMDKVLTKHVLKSLGIDFPKFDVLTKEELLS 132

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
           ++ ++  P+VIKP++GGS++G+  I       LDL  + +    D++++E+YV G E+  
Sbjct: 133 AKEVLPYPFVIKPVRGGSTIGVHAIFSKSEY-LDL-SAHADTLEDRMIVEEYVSGQEVQT 190

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
            V    ++   E+   +   YSY+ KY      H+ PA +P DIY      A   HQ +G
Sbjct: 191 AVFLGRAIGTMELLF-EGRIYSYDAKYVEGLCEHIFPANLPYDIYNLTLEWALKLHQCLG 249

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPE-MAAYAGYSFRELLLWMVEDA 296
           C+ +SR DF +D  ++ +  LEIN  PGMT  S  PE +    G +F  ++  +V+DA
Sbjct: 250 CKTLSRVDFRYDVANKVLKLLEINTHPGMTVSSTLPEVLWLRCGLNFDHVVDLIVQDA 307


>gi|182414453|ref|YP_001819519.1| D-alanine--D-alanine ligase [Opitutus terrae PB90-1]
 gi|177841667|gb|ACB75919.1| D-alanine--D-alanine ligase [Opitutus terrae PB90-1]
          Length = 311

 Score =  268 bits (687), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 98/300 (32%), Positives = 152/300 (50%), Gaps = 11/300 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AV  GG SSEREVSL SG+ACA+ALE + F+V +  +D          +  + F+ LHG
Sbjct: 6   IAVFSGGTSSEREVSLGSGQACAAALEKS-FRVERFQIDADALPAGLDPQRHVVFSTLHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG +Q +L+   + Y     ++SAL+MDK  +K+  ++ G+ V P +         
Sbjct: 65  TFGEDGGMQRLLDAAGMHYAGCDAVSSALTMDKTLTKETAAAKGIKVIPGVTFPAAKKPR 124

Query: 121 QHLI----SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
              +        V+KP   GSS+G+ ++   + +   L          + +IE+ + G E
Sbjct: 125 PEQVIEQFGERVVVKPNAEGSSVGLNLVGSREELTRVLDVI----QNGRWIIERRIFGRE 180

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           L  GV+   ++ V EI  PKS  Y Y  KY+   + ++ PA +   + +++Q  A  A  
Sbjct: 181 LAVGVLNGRAMGVVEIR-PKSGVYDYASKYTKGMTNYLAPAPLDAALTQKIQAAAQTAFA 239

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           A GCR  +R DF+      +++ LEIN  PGM   S+ P  A   G  F  L+  MV  A
Sbjct: 240 ACGCRDYARVDFIL-GDDHELYLLEINTLPGMKETSLLPMSARCEGIDFTALVKAMVTPA 298


>gi|134103809|ref|YP_001109470.1| D-alanine--D-alanine ligase B [Saccharopolyspora erythraea NRRL
           2338]
 gi|133916432|emb|CAM06545.1| D-alanine--D-alanine ligase B [Saccharopolyspora erythraea NRRL
           2338]
          Length = 315

 Score =  268 bits (687), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 94/310 (30%), Positives = 161/310 (51%), Gaps = 18/310 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG+S ER+VSL SG+  ++AL   G  V++ D D  +   +   +PD     LHG
Sbjct: 6   VAVLAGGLSHERDVSLRSGRRLSAALRSVGMTVAEWDADSRLLSRIEQERPDAVVVALHG 65

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GE+G VQ++L++  IPY  +   A   + DK  +K  ++  G+     +++   T   
Sbjct: 66  GEGENGAVQSVLDMYGIPYVGTDPRACRRAWDKPTAKAELARSGLTTPDWVVLPHATFRE 125

Query: 121 Q----------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                        +  P ++KP +GGS+LG  V++    +P  ++ + S  +GD +L+E+
Sbjct: 126 LGAQSVLDALVAKLGLPLMLKPDQGGSALGARVVRDAADLPSAMVGALS--YGDTVLVEK 183

Query: 171 YVDGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE 226
           Y++G E+  GV+    G  +L   +I    +  Y Y  +Y++  +T+  PA++  +    
Sbjct: 184 YIEGTEVAIGVLDGPDGPEALPAVQIE-ATNGVYDYTARYTAGLTTYRTPAELSPETAAA 242

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
              LA  AH+ +G R +SR+D + D     V +LE+NV PG+T  S+ P     AG S  
Sbjct: 243 AGDLAVAAHRLLGLRDVSRTDAIID-RDGTVHFLEVNVSPGLTETSLLPMAIEAAGRSLG 301

Query: 287 ELLLWMVEDA 296
           ++   +VE A
Sbjct: 302 DVFATLVERA 311


>gi|326800470|ref|YP_004318289.1| D-alanine--D-alanine ligase [Sphingobacterium sp. 21]
 gi|326551234|gb|ADZ79619.1| D-alanine--D-alanine ligase [Sphingobacterium sp. 21]
          Length = 333

 Score =  268 bits (687), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 85/327 (25%), Positives = 161/327 (49%), Gaps = 32/327 (9%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40
           +A++ GG + E E+SL S       L+ + F V +I +                    D 
Sbjct: 5   IALITGGFTGEIEISLKSAAFVEQKLQTSRFDVYKIILTPESWYHVDDAGIKHEVNRNDF 64

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           ++ L    +K DLAF ++HG+ GEDG +Q  L+++ + YT    L SAL+M+K  +K ++
Sbjct: 65  TLSLKDGLVKFDLAFIMIHGSPGEDGRLQGYLDMIGLKYTSCDTLTSALTMNKAYTKSLL 124

Query: 101 SSC-GVPVCPSILVNR-----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154
               G+ + PS+ ++        ++ ++ +  PY +KP  GGSS+G+  +K+   +   +
Sbjct: 125 QGIDGLYLAPSVCLSPATRAVSEINVKNELKLPYFVKPNGGGSSIGMTKVKQLDELSSAI 184

Query: 155 LQSSSWNHGDQ-LLIEQYVDGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSL 209
            ++    +  + +L+E++V G E + G+     G   L  TE+   + +F+ +E KY   
Sbjct: 185 DRALGTENAGKQVLVEEFVSGREFSVGIYNSKAGLKVLPATEVITTR-EFFDFEAKYIPG 243

Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
            +  + PA +  +    V++L    +  + C+G+ R DF  +  + K +++EIN  PG T
Sbjct: 244 LTKEITPADLTNEQQGRVEQLVKEVYIRLNCKGLVRIDFFLERETDKFYFIEINTIPGQT 303

Query: 270 PVSIFPEMAAYAGYSFRELLLWMVEDA 296
             S  P+    AG    +    ++E A
Sbjct: 304 ETSFIPQQVRAAGLQETDFYTELIEQA 330


>gi|161830077|ref|YP_001597183.1| D-alanyl-alanine synthetase A [Coxiella burnetii RSA 331]
 gi|189083040|sp|A9N8L3|DDL_COXBR RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|161761944|gb|ABX77586.1| D-alanine--D-alanine ligase [Coxiella burnetii RSA 331]
          Length = 372

 Score =  268 bits (687), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 86/348 (24%), Positives = 154/348 (44%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50
           ++VL GG S+E E+S+ S K   + L+ A + +S I +       L              
Sbjct: 7   ISVLCGGQSTEHEISIQSAKNIVNTLDAAKYLISVIFIVHVGRWYLIDQPEMFLAHSPDH 66

Query: 51  --------------------------------PDLAFNVLHGNFGEDGLVQAILELLEIP 78
                                            D  F ++HG  GEDG +Q +LELL +P
Sbjct: 67  LVKEGSARPITIAFGDAAKPWQSLNGDGRRYSADCVFPMVHGTQGEDGALQGLLELLNLP 126

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-------QHLISPPYVIK 131
           Y  + + +SA+ M+K  +K V+ + G+PV     ++                 +    +K
Sbjct: 127 YVGANVQSSAVCMEKDLTKTVLRAGGIPVVDWHTLSPRDATEGVYQRLLDRWGTSELFVK 186

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
            +  GSS+  + +K +      + +   + + D+L++E  + G E+ C V+G+ +   + 
Sbjct: 187 AVSLGSSVATLPVKTETEFTKAVKEV--FRYDDRLMVEPRIRGREIECAVLGNGAPKASL 244

Query: 192 IA--VPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               +P  D+YSY+ KY     +T      +   + K++Q++A  A + + C G++R DF
Sbjct: 245 PGEIIPHHDYYSYDAKYLDPNGATTTTSVDLSESVTKQIQQIAIDAFKMVHCSGMARVDF 304

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              P + KV   EIN  PG T +S++P+M   +G     LL  ++E A
Sbjct: 305 FVTP-NNKVLVNEINTIPGFTNISMYPKMWEASGLPCPNLLDQLIELA 351


>gi|325103814|ref|YP_004273468.1| D-alanine/D-alanine ligase [Pedobacter saltans DSM 12145]
 gi|324972662|gb|ADY51646.1| D-alanine/D-alanine ligase [Pedobacter saltans DSM 12145]
          Length = 330

 Score =  268 bits (687), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 84/329 (25%), Positives = 162/329 (49%), Gaps = 37/329 (11%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------------------- 40
           +A++ GG + E  +SL+S K     L+ + + V QI +D                     
Sbjct: 5   IALVAGGFTGESVISLNSTKTVYKNLDRSKYNVYQIIIDSEKWYHEDEQGESHLIDKNDF 64

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           S+ +    +  D AF ++HG  GEDG +Q   ++L IPYT      SA++M+K  +KQ+V
Sbjct: 65  SINIKGTKVTFDCAFIIIHGIPGEDGKLQGYFDMLNIPYTSCDATTSAITMNKGYTKQIV 124

Query: 101 SSCG-VPVCPSILVNRFT----MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
           S+   + +  S+ +         + +  +  P  +KP  GGSS+G+  + +   +   + 
Sbjct: 125 SAVPDLNIAKSVQLFSLDSYKQAEIEQNLGLPLFVKPNNGGSSIGMSKVNEWDDLDKAV- 183

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCG---VMGD-ASLDVTEIAVPKSDFYSYELKYSSLNS 211
              ++  G ++LIE+++ G E T G   V G+   L +TEI   K +F+ +E KY++  +
Sbjct: 184 -QRAFAEGSEVLIEEFISGREFTVGAYTVDGEVNVLPITEIITTK-EFFDFEAKYTAGLT 241

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271
             V PA++  ++ + +  +    +  + C+G+ R DF+    ++  +++E+N  PG +  
Sbjct: 242 NEVTPAELDNELVERIGEIIKRTYIQLNCKGMVRIDFIL-KDNKDFYFIEVNTIPGQSEN 300

Query: 272 SIFPEMAAYAGYS----FRELLLWMVEDA 296
           SI P+    AG +    +  L+   ++ A
Sbjct: 301 SIIPQQVRAAGLTLTYFYGNLIDEALKTA 329


>gi|146339809|ref|YP_001204857.1| D-alanyl-alanine synthetase A [Bradyrhizobium sp. ORS278]
 gi|190359116|sp|A4YRU4|DDL_BRASO RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|146192615|emb|CAL76620.1| D-alanine--D-alanine ligase A (D-alanylalanine synthetase A)
           (D-Ala-D-Ala ligase A) [Bradyrhizobium sp. ORS278]
          Length = 367

 Score =  268 bits (687), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 85/353 (24%), Positives = 152/353 (43%), Gaps = 58/353 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLA------------- 47
           +A+L GG S+E +VS +S      +L+   + ++ I +      VLA             
Sbjct: 8   VAILFGGRSAEHDVSRASAANIFRSLDAGRYALTLIGITHDGRWVLADAVNDATSAALIV 67

Query: 48  ----------------------------HLKPDLAFNVLHGNFGEDGLVQAILELLEIPY 79
                                        L  D+ F VLHG  GEDG VQ  LEL ++ Y
Sbjct: 68  PADGPQIVLLPAGRGRALAIDGSAAAPRELAFDVIFPVLHGPNGEDGTVQGALELADVAY 127

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR-----FTMDSQHLISPPYVIKPLK 134
               +L SA +MDK  +K+++   G+P+ P + +       +   ++ + S    +KP  
Sbjct: 128 VGGRVLGSAAAMDKDVAKRLLRDAGLPIVPFVTMTAASPVSYDDAARAVGSSELFVKPAN 187

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMG--DASLDVTE 191
            GSS+GI   +           +  ++   ++LIE+ +    E+ C V+   D  +  +E
Sbjct: 188 LGSSVGISKTRDAAEFEAACQLALRFDR--KILIERCIAPVREIECAVLEHADGQIKASE 245

Query: 192 ----IAVPKSDFYSYELKYSS-LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRS 246
               +      FYSYE KY+    +   +PA++   + + ++++A     A+ C  ++R 
Sbjct: 246 LGEIVPANSHGFYSYEAKYTDANGAALHVPAQVEPAVAQRIRKMATEVFGALCCESLARV 305

Query: 247 DFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
           DF       +++  E+N  PG T +S++P+M   AG     L+  +V  A   
Sbjct: 306 DFFVR--GDEIYVNEVNTLPGFTNISMYPKMWEAAGLPQPALMDELVAHALAR 356


>gi|315022540|gb|EFT35567.1| D-alanyl-alanine synthetase A [Riemerella anatipestifer RA-YM]
          Length = 318

 Score =  268 bits (687), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 91/324 (28%), Positives = 157/324 (48%), Gaps = 35/324 (10%)

Query: 5   MGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH---------------- 48
           MGG S E +VSL SG+    +L+   + V ++ V +     L                  
Sbjct: 1   MGGYSDEYKVSLKSGQLIYDSLDRDLYNVYKVVVLKEGWFYLDENEAKLPIQKGDFSVNL 60

Query: 49  -----LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103
                L+ D+ FN++HG  GE+G++QA  + +   YT      SAL+ +K  +  V++  
Sbjct: 61  PSGEVLRFDVCFNIIHGTPGENGVLQAYWDAIGQKYTGCDFYQSALTFNKKDTLAVLAKY 120

Query: 104 GVPVCPSILVNRFTMDSQHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
           G+P   S  + +     +      +  P  +KP + GSSLGI  +K+       L    +
Sbjct: 121 GIPSAKSFYIKKGEAYDKDKIINELKLPLFVKPNQSGSSLGISKVKEVSEFEAAL--EKA 178

Query: 160 WNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215
           +   D++L+E ++DG+E++ GV+        L +TEI +P+++F+ YE KY    S  ++
Sbjct: 179 FLEDDEVLVESFLDGMEVSVGVLDYKGETIVLGITEI-IPETEFFDYEAKY-QGASQEII 236

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275
           PA++       V+ +A  A+  +G +G SRS+++   +    + LE+N  PG +P SI P
Sbjct: 237 PARLDEATRLRVEEVAKRAYNYLGMKGFSRSEYII--MDGVPYMLEMNTNPGFSPASILP 294

Query: 276 EMAAYAGYSFRELLLWMVEDASCL 299
           + A   G S  +L    VE A   
Sbjct: 295 QQARIYGISITDLCGNEVEKALAK 318


>gi|212212282|ref|YP_002303218.1| D-alanyl-alanine synthetase A [Coxiella burnetii CbuG_Q212]
 gi|212010692|gb|ACJ18073.1| D-alanine--D-alanine ligase [Coxiella burnetii CbuG_Q212]
          Length = 373

 Score =  268 bits (687), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 87/348 (25%), Positives = 154/348 (44%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50
           ++VL GG S+E E+S+ S K   + L+ A + +S I +D      L              
Sbjct: 8   ISVLCGGQSTEHEISIQSAKNIVNTLDAAKYLISVIFIDHVGRWYLIDQPEMFLAYSPDH 67

Query: 51  --------------------------------PDLAFNVLHGNFGEDGLVQAILELLEIP 78
                                            D  F ++HG  GEDG +Q +LELL +P
Sbjct: 68  LVKEGSARPITIAFGDAAKPWQSLNGDGRRYSADCVFPMVHGTQGEDGALQGLLELLNLP 127

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-------QHLISPPYVIK 131
           Y  + + +SA+ M+K  +K V+ + G+PV     ++                 +    +K
Sbjct: 128 YVGANVQSSAVCMEKDLTKTVLRAGGIPVVDWHTLSPRDATEGVYQRLLDRWGTSELFVK 187

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
            +  GSS+  + +K +      + +   + + D L++E  + G E+ C V+G+ +   + 
Sbjct: 188 AVSLGSSVATLPVKTETEFTKAVKEV--FRYDDHLMVEPRIRGREIECAVLGNGAPKASL 245

Query: 192 IA--VPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               +P  D+YSY+ KY     +T      +   + K++Q++A  A + + C G++R DF
Sbjct: 246 PGEIIPHHDYYSYDAKYLDPNGATTTTSVDLSGSVTKQIQQIAIDAFKMVHCSGMARVDF 305

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              P + KV   EIN  PG T +S++P+M   +G     LL  ++E A
Sbjct: 306 FVTP-NNKVLVNEINTIPGFTNISMYPKMWEASGLPCPNLLDQLIELA 352


>gi|320095097|ref|ZP_08026806.1| D-alanine-D-alanine ligase [Actinomyces sp. oral taxon 178 str.
           F0338]
 gi|319977964|gb|EFW09598.1| D-alanine-D-alanine ligase [Actinomyces sp. oral taxon 178 str.
           F0338]
          Length = 323

 Score =  268 bits (687), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 92/307 (29%), Positives = 168/307 (54%), Gaps = 19/307 (6%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62
           ++ GG++ ER+VS+ SG+  A+ L  AGF V   DV+ ++   +A  +P++ + ++HG+ 
Sbjct: 9   IIAGGLTHERDVSVRSGRRVANILTRAGFVVRITDVNDTLVSTIASFQPNVVWPLVHGSI 68

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---- 118
           GEDG +Q +LE L IP+  S  + S L+ +K  +K +++S G+P      + +       
Sbjct: 69  GEDGSLQTLLESLGIPFVGSASVQSMLASNKPTAKALLASAGMPTPGWFSLPQALFRQVG 128

Query: 119 ------DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                   +H +S P VIKP  GGS+LG+      + +   ++   ++ +G +L++EQ +
Sbjct: 129 ATNVLSAIEHGVSFPVVIKPTDGGSALGLSTAHNAEELRTAMVD--AFAYGQKLMVEQRI 186

Query: 173 DGIELTCGV--MGDA--SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           DG ++   V  +GD   +L   EI+      Y Y+ +Y++  + + +PA++  +   +++
Sbjct: 187 DGRDVAVSVVDLGDGPIALPPVEIST-DGGRYDYDARYTTDETEYFVPARLESNALADLR 245

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYA-GYSFRE 287
             A  AH A+G R +SR DF+ D      ++++ NV PGMT  S+ P+ A  A  YSF  
Sbjct: 246 AAAIEAHTALGLRHLSRIDFVIDE-DGTCWFIDANVAPGMTDTSLLPQAAEAADDYSFAA 304

Query: 288 LLLWMVE 294
               +V+
Sbjct: 305 FCKEVVD 311


>gi|85083381|ref|XP_957113.1| hypothetical protein NCU05127 [Neurospora crassa OR74A]
 gi|28881417|emb|CAD70534.1| hypothetical protein [Neurospora crassa]
 gi|28918198|gb|EAA27877.1| predicted protein [Neurospora crassa OR74A]
          Length = 346

 Score =  268 bits (686), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 96/335 (28%), Positives = 172/335 (51%), Gaps = 38/335 (11%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI--------------DVDRSVGL-- 44
           +A+++GG S E +VS+S+G A  + ++ A + + +I              D D+ + +  
Sbjct: 9   IAIVVGGYSGEYDVSISTGNAIYANVDRARYNLYKIVIPRNPKAGWYHLTDNDKQIPVDR 68

Query: 45  --------VLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRS 96
                       ++ DLA+  +HGN GE+G++Q   ++L +PYT  G   SAL+ +K   
Sbjct: 69  NDFSVTLSTGEKIQFDLAYISIHGNPGENGVLQGYFDMLGLPYTSCGFYTSALTANKGHC 128

Query: 97  KQVVSSCGV-PVCPSILVNR---FTMDSQHLI---SPPYVIKPLKGGSSLGIIVIKKDQS 149
             VV S GV  V  S L++R     +D + L+     P  +KP  GGSS+    +K  + 
Sbjct: 129 NPVVRSFGVVEVAKSRLLHRNQISALDPEALLFEFDLPVFVKPASGGSSVATTKVKSIEQ 188

Query: 150 IPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS-----LDVTE-IAVPKSDFYSYE 203
           +   +  +   +   Q+L+E++++G E  CGV+ DA        +TE I    S+++ Y 
Sbjct: 189 VVQAVEDAMREDGNGQVLVEEFIEGREFNCGVIRDAEGWLHVFPITEVIPHGDSEYFDYN 248

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            KY+  +S+ V PA++   +   ++  + + +  + CRG+ R D+ ++P    +++LE+N
Sbjct: 249 AKYN-GSSSKVTPAEVETQVSDRIKDTSTMLYDLLDCRGVVRFDYRYNPELYALYFLEVN 307

Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
             PG TP SI P+ A  AG S  +L   ++E A  
Sbjct: 308 TIPGQTPESIVPQQARAAGISTADLYHMVIECALA 342


>gi|288919619|ref|ZP_06413948.1| D-alanine/D-alanine ligase [Frankia sp. EUN1f]
 gi|288349017|gb|EFC83265.1| D-alanine/D-alanine ligase [Frankia sp. EUN1f]
          Length = 369

 Score =  268 bits (686), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 95/314 (30%), Positives = 146/314 (46%), Gaps = 24/314 (7%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50
           + V+ GG S E EVSL+S  A   AL  AG  V+ + +DR         +          
Sbjct: 23  VVVIGGGTSCEHEVSLASAAAVTEALTAAGHAVAALTIDRDGQWRDHAGRLVGLAGAVEV 82

Query: 51  ---PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV 107
                 A  +LHG  GEDG + A+ EL  +PY  S + A AL+MDK  +K V  + GV  
Sbjct: 83  LRSCVAAVPMLHGPGGEDGTLAALCELAGVPYVGSPVRAGALAMDKWATKLVAEAVGVRT 142

Query: 108 CPSILVNRFTMDSQHLISP-PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQL 166
            P ILVNR    +  +++P P V+KP+  GSS G+ ++     +   +   ++    D++
Sbjct: 143 APGILVNRARTAAGAVMAPLPAVVKPVSAGSSYGVSLVHDTAQLTAAV--EAALTLDDRV 200

Query: 167 LIEQYVDGIELTCGVMGDA-----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL 221
           L+E+ V G E+   V+G            EI    + F+    KY   ++  ++PA +  
Sbjct: 201 LVEEVVHGREIDLAVLGRPDGTRTVAPPLEIVTGHAGFFDLAAKYD-GSARFLVPAPLSD 259

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYA 281
                ++  A   + A+GC G++R DF            E+N  PG T  S  P M A A
Sbjct: 260 AQLGVLREAAVTVYDALGCAGVARVDFFLTDAG--PVLNEVNTMPGFTSHSQVPRMFAAA 317

Query: 282 GYSFRELLLWMVED 295
           G  + ELL  ++ D
Sbjct: 318 GVPYPELLELLIAD 331


>gi|318040424|ref|ZP_07972380.1| D-alanine--D-alanine ligase [Synechococcus sp. CB0101]
          Length = 364

 Score =  268 bits (686), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 94/344 (27%), Positives = 156/344 (45%), Gaps = 50/344 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALED----AGFKVSQIDVDR--------SVGLVLAH 48
           + ++ GG+S E  VS+ S    A+AL        +++S   +D+            VLA 
Sbjct: 8   LGLVFGGVSGEHAVSIRSANTVAAALRRGANAERYQLSCFYIDQWGHWWPPAVADAVLAK 67

Query: 49  LKP-------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
             P                          +   VLHG  GEDG +Q +  L+++P+  SG
Sbjct: 68  GTPASREELPAAPLRPGFQGFPEGALDMQVWVPVLHGPNGEDGTIQGLFSLMQVPFVGSG 127

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLK 134
           +L SA+ MDK   K   ++ G+P  P   V+   +++         +  +  P  IKP  
Sbjct: 128 VLGSAVGMDKQAMKAAFAAAGLPQVPYACVDAQELEADPQALLDRLEQQLGYPCFIKPAN 187

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194
            GSS+GI        +   L  ++S  H  +L++EQ +D  EL C V+G  S+  + +  
Sbjct: 188 LGSSVGISKATNRSELLAGLELAAS--HDPRLVVEQGIDARELECAVLGGRSMQASVLGE 245

Query: 195 P--KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
               +D+Y Y+ KYS   S  V+PA++   I    + +A  A +A+   G++R DF  D 
Sbjct: 246 ICFDADWYDYDTKYSDGKSHTVIPAEVSSAISDRARSMAIAACRAVAAEGLARVDFFLDR 305

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            S  ++  EIN  PG T  S++P +   +G     L+  +V+ A
Sbjct: 306 SSGDLWLNEINTLPGFTSQSMYPMLWEASGLPLDALVHQLVQLA 349


>gi|223889230|ref|ZP_03623818.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase) [Borrelia
           burgdorferi 64b]
 gi|223885263|gb|EEF56365.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase) [Borrelia
           burgdorferi 64b]
          Length = 361

 Score =  268 bits (685), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 86/342 (25%), Positives = 161/342 (47%), Gaps = 50/342 (14%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDA-GFKVSQIDVDR--------------------- 40
           ++ GG+S E E+S  S  +   AL D   + +  + +D+                     
Sbjct: 7   LIFGGVSFEHEISCKSAYSIYLALLDLNKYYIYPVYIDKCTGVWYLLDSVSDPPKPINTD 66

Query: 41  -----------SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
                       +     +L+ D+ F V+HG  GEDG +Q +L++++IP   +GI+ SA+
Sbjct: 67  VLPIVSLLPGFGIFSNNKNLEIDVVFPVVHGRTGEDGAIQGVLKVMDIPCVGAGIIGSAI 126

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPLKGGSSLG 140
           S +K   K ++ S  +P+ P I   +            + +  +  P ++KP   GSS+G
Sbjct: 127 SSNKYFCKLLLKSFDIPLVPFIGFRQHDYFLDKEEIKRNVKETLGYPVIVKPAVLGSSIG 186

Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS---LDVTEIAVPKS 197
           I V   +  I   + ++    +   ++IE++++  E+ C ++G+         E+ V   
Sbjct: 187 INVAYSENQIESFIKEAL--KYDLTIVIEKFIEAREIECSIIGNEKMKIFSPGEVVVQDF 244

Query: 198 DFYSYELKYS--SLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
            FY Y+ KYS    NS     PA +  +    ++  AFLA++ +  RG++R DF  +  S
Sbjct: 245 IFYDYDAKYSVIPGNSIIFNIPAHLETNQLLSIKEYAFLAYKNLELRGMARVDFFVEKKS 304

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             ++  EIN  PG T +S+F +M +  G  F++L+  +++ A
Sbjct: 305 GTIYLNEINTIPGFTDISMFAKMCSNDGLQFKDLVDNLIDYA 346


>gi|15594545|ref|NP_212334.1| D-alanyl-alanine synthetase A [Borrelia burgdorferi B31]
 gi|3913421|sp|O51218|DDL_BORBU RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|2688093|gb|AAC66589.1| D-alanine--D-alanine ligase (ddlA) [Borrelia burgdorferi B31]
          Length = 356

 Score =  268 bits (685), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 85/342 (24%), Positives = 161/342 (47%), Gaps = 50/342 (14%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDA-GFKVSQIDVDR--------------------- 40
           ++ GG+S E E+S  S  +   AL D   + +  + +D+                     
Sbjct: 2   LIFGGVSFEHEISCKSAYSIYLALLDLNKYNIYPVYIDKCTGVWYLLDSVSDPPKPINTD 61

Query: 41  -----------SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
                       +     +L+ D+ F V+HG  GEDG +Q +L++++IP   +GI+ SA+
Sbjct: 62  VLPIVSLLPGFGIFSNNKNLEIDVVFPVVHGRTGEDGAIQGVLKVMDIPCVGAGIIGSAI 121

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPLKGGSSLG 140
           S +K   K ++ S  +P+ P I   +            + + ++  P ++KP   GSS+G
Sbjct: 122 SSNKYFCKLLLKSFDIPLVPFIGFRQHDYFLDKEEIKRNVKEVLGYPVIVKPAVLGSSIG 181

Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS---LDVTEIAVPKS 197
           I V   +  I   + ++    +   ++IE++++  E+ C ++G+         E+ V   
Sbjct: 182 INVAYSENQIESFIKEAL--KYDLTIVIEKFIEAREIECSIIGNEKMKIFSPGEVVVQDF 239

Query: 198 DFYSYELKYS--SLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
            FY Y+ KYS    NS     PA +  +    ++  AFL ++ +  RG++R DF  +  S
Sbjct: 240 IFYDYDAKYSVIPGNSIIFNIPAHLETNQLLSIKEYAFLTYKNLELRGMARVDFFVEKKS 299

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             ++  EIN  PG T +S+F +M +  G  F++L+  +++ A
Sbjct: 300 GTIYLNEINTIPGFTDISMFAKMCSNDGLQFKDLVDNLIDYA 341


>gi|224532828|ref|ZP_03673443.1| D-alanine--D-alanine ligase [Borrelia burgdorferi WI91-23]
 gi|224512217|gb|EEF82603.1| D-alanine--D-alanine ligase [Borrelia burgdorferi WI91-23]
          Length = 361

 Score =  268 bits (685), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 86/342 (25%), Positives = 161/342 (47%), Gaps = 50/342 (14%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDA-GFKVSQIDVDR--------------------- 40
           ++ GG+S E E+S  S  +   AL D   + +  + +D+                     
Sbjct: 7   LIFGGVSFEHEISCKSAYSIYLALLDLNKYYIYPVYIDKCTGVWYLLDSVSDPPKPINTD 66

Query: 41  -----------SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
                       +     +L+ D+ F V+HG  GEDG +Q +L++++IP   +GI+ SA+
Sbjct: 67  VLPIVSLLPGFGIFSNNKNLEIDVVFPVVHGRTGEDGAIQGVLKVMDIPCVGAGIIGSAI 126

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPLKGGSSLG 140
           S +K   K ++ S  +P+ P I   +            + +  +  P ++KP   GSS+G
Sbjct: 127 SSNKYFCKLLLKSFDIPLVPFIGFRQHDYFLDKEEIKRNVKEALGYPVIVKPAVLGSSIG 186

Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS---LDVTEIAVPKS 197
           I V   +  I   + ++    +   ++IE++++  E+ C ++G+         E+ V   
Sbjct: 187 INVAYSENQIESFIKEAL--KYDLTIVIEKFIEAREIECSIIGNEKMKIFSPGEVVVQDF 244

Query: 198 DFYSYELKYS--SLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
            FY Y+ KYS    NS     PA +  +    ++  AFLA++ +  RG++R DF  +  S
Sbjct: 245 IFYDYDAKYSVIPGNSIIFNIPAHLETNQLLSIKEYAFLAYKNLELRGMARVDFFVEKKS 304

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             ++  EIN  PG T +S+F +M +  G  F++L+  +++ A
Sbjct: 305 GTIYLNEINTIPGFTDISMFAKMCSNDGLQFKDLVDNLIDYA 346


>gi|325268628|ref|ZP_08135258.1| D-alanine-D-alanine ligase [Prevotella multiformis DSM 16608]
 gi|324989156|gb|EGC21109.1| D-alanine-D-alanine ligase [Prevotella multiformis DSM 16608]
          Length = 332

 Score =  267 bits (684), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 86/326 (26%), Positives = 147/326 (45%), Gaps = 35/326 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40
           +A++ GG SSE +VS+ SG+   S  +   + +  +DV                    D 
Sbjct: 8   IAIVCGGDSSEHDVSMRSGQGLYSFFDKERYNIYIVDVKGIDWHVELPDRSLAPIDKNDF 67

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           S        + D A+  +HG  GE+G++Q   +L+ +PY+ SG+L  A++ DK      +
Sbjct: 68  SFVENGRRREFDYAYITIHGQPGENGVMQGYFDLIHLPYSTSGVLVEAMTFDKFVLNNYL 127

Query: 101 SSCGVPVCPSILVNRF----TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
              GV V  SIL+ R       + +  +  P  +KP   GSS G+  +K    +   L  
Sbjct: 128 RGFGVKVADSILLRRGEPYNEAEIEKRLGMPCFVKPAADGSSFGVSKVKNADQLAPAL-- 185

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDAS----LDVTEIAVPKSDFYSYELKYSSLNST 212
             ++   ++++IE ++DG+E++ GV            TE+ V  ++F+ Y  KY+     
Sbjct: 186 RVAFMESNEVMIEGFMDGMEISQGVYKTKEKAVVFPATEV-VTSNEFFDYNAKYN-GQVQ 243

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL---SRKVFWLEINVQPGMT 269
            + PA++  +    V       +  +   GI R D++          V  LEIN  PGMT
Sbjct: 244 EITPARMSPETAARVAAETSRIYDILHANGIIRIDYIISKDKDGEDVVNMLEINTTPGMT 303

Query: 270 PVSIFPEMAAYAGYSFRELLLWMVED 295
             S  P+    AG   +E+L  +VE+
Sbjct: 304 ATSFIPQQVRAAGLDIKEVLSEIVEN 329


>gi|289643153|ref|ZP_06475282.1| D-alanine/D-alanine ligase [Frankia symbiont of Datisca glomerata]
 gi|289507045|gb|EFD28015.1| D-alanine/D-alanine ligase [Frankia symbiont of Datisca glomerata]
          Length = 385

 Score =  267 bits (684), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 83/260 (31%), Positives = 133/260 (51%), Gaps = 16/260 (6%)

Query: 51  PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            D+ F +LHG FGEDG VQ +LE+  +PY  SG+ ASA +MDK   K ++++ G+ + P 
Sbjct: 122 VDVVFPLLHGPFGEDGTVQGLLEMAAVPYVGSGVFASAAAMDKQYMKILLAAAGLDIGPY 181

Query: 111 ILVNRFTM---DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL 167
            ++        D +  +  P  +KP +GGSS+GI  +     +   L  + +     ++L
Sbjct: 182 TVLRAGQALSGDDRERLGLPVFVKPARGGSSIGISRVDAWDDLATALKAARA--VDPKVL 239

Query: 168 IEQYVDGIELTCGVMGDASLDVTEIAVP----------KSDFYSYELKYSSLNSTHVLPA 217
           +E  V G E+ CGV+G       E ++P           + FY +E KY S  +   +PA
Sbjct: 240 VEAAVVGREVECGVLGSLDGGGPEASLPAEVTVASSAGSAGFYDFEAKYLSDAARFDVPA 299

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
            +P ++   V+++A  A  A+ C G++R D    P    V   E+N  PG TP S+FP M
Sbjct: 300 NLPAEVTAAVRQIAVRAFVALDCAGLARVDVFVRP-DGSVVVNEVNTMPGFTPTSMFPRM 358

Query: 278 AAYAGYSFRELLLWMVEDAS 297
            A  G  +  L+  +V  A+
Sbjct: 359 WAATGLDYPRLVDRLVALAT 378



 Score = 63.6 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 24/52 (46%)

Query: 1  MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD 52
          +AVL GG S+E  +S  S  +   AL+   + V  + +      VL    PD
Sbjct: 11 IAVLYGGRSTEHAISCVSAGSVLRALDRRRYDVVAVGITPDGRWVLGPDDPD 62


>gi|227496614|ref|ZP_03926892.1| possible D-alanine--D-alanine ligase [Actinomyces urogenitalis DSM
           15434]
 gi|226833894|gb|EEH66277.1| possible D-alanine--D-alanine ligase [Actinomyces urogenitalis DSM
           15434]
          Length = 320

 Score =  267 bits (684), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 85/307 (27%), Positives = 141/307 (45%), Gaps = 16/307 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +A+L GG+S ER+VSL SG   A  L+  G  V  +DVD      L    PD+ + ++HG
Sbjct: 14  IAILAGGLSHERDVSLRSGNRVAQVLKHLGHTVLVLDVDARTIASLRAFGPDVVWPLVHG 73

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q IL  L++PY  +       +  K  +K  V + GV    S+ + +     
Sbjct: 74  GPGEDGGLQNILLALDLPYVGTHSDGCQRASFKPTAKAGVRAAGVKTPDSLTLPKAYFSQ 133

Query: 121 ----------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                        +  P V+KP +GGS LG+        +   ++  + + + ++ LIE 
Sbjct: 134 LGAQEVLGTVMSRLGLPVVVKPQQGGSGLGVSPASDADQLRNAMV--ACFAYDERALIEA 191

Query: 171 YVDGIELTCGVMGDASLD--VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           YV G E+   V+        +  + V     Y ++ +Y+   S +  PA++  +    VQ
Sbjct: 192 YVAGREIAVSVVDAGEGPQALPPVEVVTEGQYDFDARYNPGRSEYFAPARLSAEETALVQ 251

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
             A   H+ +G   +SR+D + D      +++++NV PGMT  S+ P  A  AG     L
Sbjct: 252 ETALSVHRTLGLGNVSRTDLILDEQ-GTPWFIDVNVVPGMTETSLLPLAAEAAG-DLPGL 309

Query: 289 LLWMVED 295
              +V  
Sbjct: 310 YDALVHH 316


>gi|269797059|ref|YP_003316514.1| D-alanine--D-alanine ligase [Sanguibacter keddieii DSM 10542]
 gi|269099244|gb|ACZ23680.1| D-alanine--D-alanine ligase [Sanguibacter keddieii DSM 10542]
          Length = 317

 Score =  267 bits (683), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 103/308 (33%), Positives = 170/308 (55%), Gaps = 19/308 (6%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62
           VL GG+S ER+VSL SG+  A AL  A  +V+  DVD  +   LA  +PD+ + +LHG  
Sbjct: 9   VLAGGLSHERDVSLRSGRRVAEALRSANVEVAVHDVDADLIPALAETRPDVVWPILHGAS 68

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF---TMD 119
           GEDG ++ +L+LL++PY  +G  AS ++  K  +K VV+  G+     + + +     + 
Sbjct: 69  GEDGSIRDVLDLLDVPYVGTGPRASRIAWSKPVAKSVVARAGIDTPEYVTLPQSLFRELG 128

Query: 120 SQHL-------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
           +Q +       +  P V+KP +GGS+LG+ +++    +P  ++  S + +G+  LIE+ V
Sbjct: 129 AQAVMSAVVDKLGLPLVVKPSRGGSALGVSLVRTVAELPQAMV--SCFAYGEVALIERAV 186

Query: 173 DGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           DG+EL   V+    G ++L   EI       Y Y+ +Y+   + +  PA++P    + V 
Sbjct: 187 DGVELAVSVVETVDGLSTLPAVEIVT--EGPYDYDARYNPGRTEYFSPARLPSSHAEAVA 244

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
             A  AH+A+G R ISR+D +       + +LE+NV PGMT  S+ P+ A   G+S   L
Sbjct: 245 ATAIAAHEALGLRHISRTDLIL-QADGTIQFLEVNVAPGMTETSLLPQAALAGGWSLPTL 303

Query: 289 LLWMVEDA 296
              +V+ A
Sbjct: 304 YRSVVDHA 311


>gi|216264818|ref|ZP_03436810.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase) [Borrelia
           burgdorferi 156a]
 gi|215981291|gb|EEC22098.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase) [Borrelia
           burgdorferi 156a]
          Length = 361

 Score =  267 bits (683), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 85/342 (24%), Positives = 162/342 (47%), Gaps = 50/342 (14%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDA-GFKVSQIDVDR--------------------- 40
           ++ GG+S E E+S  S  +   AL D   + +  + +D+                     
Sbjct: 7   LIFGGVSFEHEISCKSAYSIYLALLDLNKYNIYPVYIDKCTGVWYLLDSVSDPPKPINTD 66

Query: 41  -----------SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
                       +     +L+ ++ F V+HG  GEDG +Q +L++++IP   +GI+ SA+
Sbjct: 67  VLPIVSLLPGFGIFSNNKNLEINVVFPVVHGRTGEDGAIQGVLKVMDIPCVGAGIIGSAI 126

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPLKGGSSLG 140
           S +K   K ++ S  +P+ P I   +            + + ++  P ++KP   GSS+G
Sbjct: 127 SSNKYFCKLLLKSFDIPLVPFIGFRQHDYFLDKEEIKRNVKEVLGYPVIVKPAVLGSSIG 186

Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS---LDVTEIAVPKS 197
           I V   +  I   + ++    +   ++IE++++  E+ C ++G+         E+ V   
Sbjct: 187 INVAYSENQIESFIKEAL--KYDLTIVIEKFIEAREIECSIIGNEKMKIFSPGEVVVQDF 244

Query: 198 DFYSYELKYS--SLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
            FY Y+ KYS    NS     PA +  +    ++  AFLA++ +  RG++R DF  +  S
Sbjct: 245 IFYDYDAKYSVIPGNSIIFNIPAHLETNQLLSIKEYAFLAYKNLELRGMARVDFFVEKKS 304

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             ++  EIN  PG T +S+F +M +  G  F++L+  +++ A
Sbjct: 305 GTIYLNEINTIPGFTDISMFAKMCSNDGLQFKDLVDNLIDYA 346


>gi|260593409|ref|ZP_05858867.1| D-alanine--D-alanine ligase [Prevotella veroralis F0319]
 gi|260534685|gb|EEX17302.1| D-alanine--D-alanine ligase [Prevotella veroralis F0319]
          Length = 332

 Score =  266 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 91/326 (27%), Positives = 148/326 (45%), Gaps = 35/326 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40
           +A++ GG SSE +VS+ S +   S  +   + +  +DV                    D 
Sbjct: 8   IAIVCGGDSSEHDVSMHSAQGLYSFFDKERYNIYIVDVKGIDWHVELEDGTSAPIDKNDF 67

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           S      H++ D A+  +HG  GE+G++Q   +L+ +PY+ S +L  AL+ DK      +
Sbjct: 68  SFIENGKHIEFDYAYITIHGAPGENGIMQGYFDLIHLPYSTSSVLVEALTFDKYVLNNYL 127

Query: 101 SSCGVPVCPSILVNRF----TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
              GV V  SIL+ R       + +  +  P  +KP   GSS G+  +K    +   L  
Sbjct: 128 RGFGVNVADSILLRRGEEYNEEEIEKRLGMPCFVKPAADGSSFGVSKVKNIDQLAPAL-- 185

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNST 212
             ++   D+++IE ++DG E++ GV            TE+ V  ++F+ Y  KY+     
Sbjct: 186 RVAFMESDEVMIEGFLDGTEISQGVYKTKDKSIVFPATEV-VTSNEFFDYNAKYN-GQVQ 243

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF--DPLSRKVF-WLEINVQPGMT 269
            + PA+I  D  K V       +  +   GI R D++   D     V   LEIN  PGMT
Sbjct: 244 EITPARINPDTAKRVAAETSRIYDILHANGIIRIDYIISKDKEGNDVINMLEINTTPGMT 303

Query: 270 PVSIFPEMAAYAGYSFRELLLWMVED 295
             S  P+    AG   +E+L  +VE+
Sbjct: 304 ATSFIPQQVRAAGLDIKEVLSEIVEN 329


>gi|325066331|ref|ZP_08125004.1| D-alanine--D-alanine ligase [Actinomyces oris K20]
          Length = 315

 Score =  266 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 83/307 (27%), Positives = 145/307 (47%), Gaps = 16/307 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG+S ER++SL SG   A  L+  G  V  +D+D      L    PD+ + ++HG
Sbjct: 8   IAVLAGGLSHERDISLRSGHRVAQVLKHLGHTVLVLDIDARTIGSLKTFGPDVVWPLVHG 67

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +L  L +PY  +       +  K  +K  V + GV    S+ + +     
Sbjct: 68  GPGEDGGLQNVLISLGLPYVGTHSDGCQRASFKPTAKASVRTGGVITPDSLTLPQSYFSQ 127

Query: 121 ----------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                        +  P V+KP +GGS LG+        +   ++  + + + ++ LIE+
Sbjct: 128 LGAQEVLTVVAGHLGLPVVVKPHQGGSGLGVSYASTADELRSAMV--ACFAYDERALIER 185

Query: 171 YVDGIELTCGVMGDASLD--VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           Y+ G EL   V+        +  + V     Y ++ +Y+   S + +PA++   + ++V+
Sbjct: 186 YIAGTELAVSVVDTGEGPRALPPVEVVTDGQYDFDARYNPGRSEYFVPARLDEAVIEKVK 245

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
             A   H  +G   +SR+D + D      +++++NV PGMT  S+ P  A   G S  EL
Sbjct: 246 TTAVTVHTTLGLGNLSRTDLILD-DEGTPWFIDVNVIPGMTETSLLPIAAKAEG-SLEEL 303

Query: 289 LLWMVED 295
              +V +
Sbjct: 304 YDALVRN 310


>gi|297587783|ref|ZP_06946427.1| D-alanine--D-alanine ligase [Finegoldia magna ATCC 53516]
 gi|297574472|gb|EFH93192.1| D-alanine--D-alanine ligase [Finegoldia magna ATCC 53516]
          Length = 350

 Score =  266 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 77/336 (22%), Positives = 150/336 (44%), Gaps = 44/336 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH-----LKPD--- 52
           + VL GG S+E EVS++S +   + L    + VS I V R    ++       +K D   
Sbjct: 5   IYVLYGGPSTEHEVSITSARTLINNLSKEKYNVSAIFVRRDKKFIMKENITEEIKTDDEL 64

Query: 53  ------------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
                                   + F  +HG++GEDG +Q  +++L++P+    +L SA
Sbjct: 65  VLDTELSVIESVSDCISKINPENTVIFPAIHGSYGEDGTIQGFIKVLDLPFVGCNVLGSA 124

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTM----DSQHLISPPYVIKPLKGGSSLGIIVI 144
           L MDK  +  +     +P    +++ +       +     S    +KP   GSS+G++  
Sbjct: 125 LCMDKGYTNDIFELNKIPQAKYVVLCKNDEYNLKEIFDKTSKAVYVKPCNAGSSVGVMRA 184

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV---PKSDFYS 201
           + ++ +   +    ++ +  ++L+E+ + G EL   VMG+ +   +   V      +F+ 
Sbjct: 185 ETEEELEQAIQN--AFLYDRRILVEEEIIGPELQIAVMGNDNPVASRPGVYQIHDVEFFD 242

Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
           Y+ KY+   +  + P  +   +  + +RLA   ++ +   G SR D        +++  E
Sbjct: 243 YDAKYNDAKTEMLTPFPMDEQLELKARRLAEKVYKIMSLSGFSRVDMFVR--DNELWVNE 300

Query: 262 INVQPGMTPVSIFPEMAAYAG-YSFRELLLWMVEDA 296
           IN  PG+TP S+FP +       S  E+   +++ A
Sbjct: 301 INTVPGLTPHSMFPVLWKCTNDMSVSEVFDNLIDLA 336


>gi|187251497|ref|YP_001875979.1| D-alanine/D-alanine ligase [Elusimicrobium minutum Pei191]
 gi|186971657|gb|ACC98642.1| D-Alanine/D-alanine ligase [Elusimicrobium minutum Pei191]
          Length = 353

 Score =  266 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 92/341 (26%), Positives = 150/341 (43%), Gaps = 45/341 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           +AV+ GG S E EVS+ S       L    + V  I + +                    
Sbjct: 6   IAVVYGGKSVEHEVSVHSAADVCGILSK-KYNVINIFISKEGLWFAQEKCGPAQPSDINV 64

Query: 49  -----------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSM 91
                            +  D+ F VLHG  GEDG +Q + EL+E PY   G++ASA+ M
Sbjct: 65  TPVFSNDCMFQTADGGTISADVLFPVLHGTKGEDGCIQGLFELMETPYVGCGVMASAIGM 124

Query: 92  DKMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145
           DK  SK + +  GVP  P I       V +        +  P  +KP+  GSS+GI  +K
Sbjct: 125 DKEVSKVLAAYAGVPTLPYITFKKGDSVTKDFKAKTAKLGYPVFVKPVNLGSSIGITKVK 184

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDA----SLDVTEIAVPKSDFY 200
           ++  +   +  +  +++   +LIE+ V    E+ C V G+     S    E+     +F+
Sbjct: 185 EEAFLEKAIEFALKFDND--ILIEKGVQSPKEIFCAVCGEGNNTESSSCGELIPNGHEFF 242

Query: 201 SYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
            Y  KY   N   V  PA +  +  K +Q+ + +  +     G +R DFL      ++++
Sbjct: 243 DYHSKYIDPNGCTVKVPASVSEEEDKLMQKYSRMIFKVFKACGFARVDFLL-GKDGQIYF 301

Query: 260 LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
            EIN  PGM+  S+FP++   AG  + ++L  ++  A   R
Sbjct: 302 SEINTLPGMSNASLFPQLWRAAGKKYEDVLDTLINLALKRR 342


>gi|120437021|ref|YP_862707.1| D-alanyl-alanine synthetase A [Gramella forsetii KT0803]
 gi|190359136|sp|A0M4U5|DDL_GRAFK RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|117579171|emb|CAL67640.1| D-alanine--D-alanine ligase [Gramella forsetii KT0803]
          Length = 326

 Score =  266 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 93/324 (28%), Positives = 163/324 (50%), Gaps = 34/324 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           +A+ MGG SSE  +S++SG      L+   ++  ++ + +    V+A             
Sbjct: 5   IAIAMGGYSSEYRISINSGNIVYKHLDHDLYEPYRVHILKGEWFVVADDDTPYPINKSNF 64

Query: 49  --------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
                   ++ D  FN +HG  GE+GL+QA LEL+ IP T      SAL+ +K     V+
Sbjct: 65  TVKINDKVIQFDCVFNTIHGTPGENGLLQAYLELIGIPQTSCDYYQSALTFNKRDLISVL 124

Query: 101 SSCGVPVCPSILVNRF----TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
              G+    +  +N+     T +    +  P  +K  + GSS G+  +K +  I      
Sbjct: 125 RPYGIKAATNYFLNKDQEINTKEIVDKVGLPCFVKANRAGSSFGVTKVKTEDEIISAAK- 183

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNST 212
            +++   D+ +IE ++DG E++ GV+       +L VTEI +P  +F+ YE KY    S 
Sbjct: 184 -TAFTEDDEAIIESFLDGTEVSVGVITYKGKVLALPVTEI-IPDGEFFDYEAKYL-GKSQ 240

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
            + PA+I  +  K+VQ +A + ++ +  +G+SRS+F+F     +  ++E+N  PG++  S
Sbjct: 241 EITPARISEEDTKKVQDIAIMIYKKLKMKGLSRSEFIFHE--GEPHFIEMNTNPGISQAS 298

Query: 273 IFPEMAAYAGYSFRELLLWMVEDA 296
           I P+ A  AG S ++L    +E A
Sbjct: 299 ILPQQAEKAGISLKDLFGSTIEAA 322


>gi|325915873|ref|ZP_08178170.1| D-alanine--D-alanine ligase [Xanthomonas vesicatoria ATCC 35937]
 gi|325537916|gb|EGD09615.1| D-alanine--D-alanine ligase [Xanthomonas vesicatoria ATCC 35937]
          Length = 286

 Score =  266 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 82/266 (30%), Positives = 142/266 (53%), Gaps = 12/266 (4%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
           R V    A  + D+ F ++HG  GEDG +Q +L +  +P+  SG+L SA++MDK  +K+V
Sbjct: 6   RPVDTEQALAQIDVVFPIVHGTLGEDGSLQGLLRMTNLPFVGSGVLGSAVAMDKDMAKRV 65

Query: 100 VSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153
           +   G+ V P +  NR T     +      +  P  +KP   GSS+G+  +    +    
Sbjct: 66  LRDAGLAVAPFVCFNRRTAAQADVAALIAQLGLPLFVKPANQGSSVGVSQVHSADAFAAA 125

Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYELKY-SSLN 210
           L  + S++H  ++L+E  + G E+ C V+G+A+   +     V    FYSYE KY S+  
Sbjct: 126 LALALSYDH--KVLVEAAIVGREIECAVLGNATPQASVCGEVVVHDAFYSYETKYISAHG 183

Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270
           +  V+PA I     + +Q++A  A+QA+ C G++R D        ++   E+N  PG T 
Sbjct: 184 ADIVIPADIYAHTQQRIQQIAVQAYQALDCAGMARVDVFL-CADGRIVINEVNTLPGFTR 242

Query: 271 VSIFPEMAAYAGYSFRELLLWMVEDA 296
           +S++P++   +G  +R L+  ++E A
Sbjct: 243 ISMYPKLWQASGLDYRSLITQLIELA 268


>gi|300726251|ref|ZP_07059704.1| D-ala D-ala ligase [Prevotella bryantii B14]
 gi|299776448|gb|EFI73005.1| D-ala D-ala ligase [Prevotella bryantii B14]
          Length = 331

 Score =  266 bits (681), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 85/326 (26%), Positives = 149/326 (45%), Gaps = 35/326 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40
           +A++ GG SSE +VS+ SG+   S  +   + V  +D+                    D 
Sbjct: 8   IAIVCGGDSSEHDVSMRSGEGLYSFFDKEKYNVYIVDIKGLSWNVNFDNGETAPIDKNDF 67

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           S       +K D A+  +HG  GE+G +Q   +L+ +PY+ SG+L  A++ DK      +
Sbjct: 68  SFMRDGKVIKFDYAYITIHGQPGENGPLQGYFDLIHLPYSTSGVLVEAMTFDKYVLNNYL 127

Query: 101 SSCGVPVCPSILVNRFTMDSQHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
              GV V  S+L+ R     +      +  P  +KP   GSS G+  +K    +   L  
Sbjct: 128 RGFGVNVADSVLIRRDEEFDEEAIAARLGMPCFVKPAADGSSFGVSKVKNADQLAPAL-- 185

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNST 212
             ++    + ++E ++DGIE++ G+   A        TE+ V  ++F+ Y  KY+     
Sbjct: 186 RVAFMECSEAMVEGFMDGIEISQGIYKTADKTVVFPATEV-VTNNEFFDYNAKYN-GQVK 243

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL---SRKVFWLEINVQPGMT 269
            + PA++  +  ++V       +  +   GI R D++       + K+  LEIN  PGMT
Sbjct: 244 EITPARLSPETAEKVAAETSRIYDILHANGIIRIDYIISKDADGNDKINMLEINTTPGMT 303

Query: 270 PVSIFPEMAAYAGYSFRELLLWMVED 295
             S  P+    AG   +++L  +VE+
Sbjct: 304 VTSFIPQQVRAAGLDIKDVLSDIVEN 329


>gi|298372650|ref|ZP_06982640.1| D-alanine--D-alanine ligase [Bacteroidetes oral taxon 274 str.
           F0058]
 gi|298275554|gb|EFI17105.1| D-alanine--D-alanine ligase [Bacteroidetes oral taxon 274 str.
           F0058]
          Length = 322

 Score =  266 bits (681), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 87/322 (27%), Positives = 156/322 (48%), Gaps = 30/322 (9%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALED--AGFKVSQID--------------VDRSVGL 44
           +A++ GG SSE EVSL S     S + D    + V+ I               +D++   
Sbjct: 4   IAIVAGGDSSECEVSLRSADGIMSFIPDDYEKYIVTIIGKKWEVHLPDDRRAPIDKNDFS 63

Query: 45  VLAHLK---PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
            +A  K    D A+  +HG  GE+G++Q   +L+ +P++   +LASAL+ +K      + 
Sbjct: 64  FVADGKKFTFDFAYITIHGTPGENGILQGYFDLIGMPFSCCDVLASALTFNKYVCNCFLK 123

Query: 102 SCGVPVCPSILVNRFTMDSQH----LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
           +  + V  S+L+    +         +  P  +KP  GGSS     +K    +   +   
Sbjct: 124 NFDINVAESVLLRTNQVVDNESVVRELGLPLFVKPAAGGSSFCTTKVKSKDMLQQAI--E 181

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI---AVPKSDFYSYELKYSSLNSTHV 214
            ++   D++++E +VDG E+TCG+       V       V K++F+ Y  KY+   S  +
Sbjct: 182 EAFAEADEVIVESFVDGTEVTCGMYKTKGKTVILPLTEVVSKNEFFDYNAKYN-NQSDEI 240

Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274
            PA+I   + + +++     ++ I  +GI R+D++ +P  R +  LE+N  PGMTP S  
Sbjct: 241 TPARISDKLTEAIKQTTAQIYELIAAKGIIRADYIIEPSGR-IVLLEVNTTPGMTPQSFL 299

Query: 275 PEMAAYAGYSFRELLLWMVEDA 296
           P+    AG    E++  ++ED+
Sbjct: 300 PQQIRAAGMDIAEVMRDIIEDS 321


>gi|229085875|ref|ZP_04218100.1| D-alanine--D-alanine ligase [Bacillus cereus Rock3-44]
 gi|228697399|gb|EEL50159.1| D-alanine--D-alanine ligase [Bacillus cereus Rock3-44]
          Length = 286

 Score =  266 bits (681), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 81/287 (28%), Positives = 146/287 (50%), Gaps = 9/287 (3%)

Query: 17  SSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLE 76
            +G+   + L+   +++  I +     LV      D+A   LHG +GEDG +Q  LE L 
Sbjct: 1   MTGEEMIAHLDKNKYEIVPITLHDKKELVEKGSNLDIALLALHGEYGEDGTIQGTLETLG 60

Query: 77  IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT---MDSQHLISPPYVIKPL 133
           +PYT SG+L+S + MDK  SK+++   G+     I ++      +D    +  P V+KP 
Sbjct: 61  VPYTGSGMLSSGICMDKNLSKKMIRYDGIETPDWIHLSNREELQLDEIDKMGYPLVVKPN 120

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
            GGSS+G+ ++   +++   L     W    +++IE+Y+ G E+TC ++    L +  I 
Sbjct: 121 SGGSSVGVKIVYDKETLLASLEDVFKW--DAEIVIEKYIKGEEITCSILDGKLLPIISIQ 178

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
              ++F+ Y  KY  + +   +  ++PL  Y+ V   A   ++ + C   +R D +    
Sbjct: 179 -HTAEFFDYHAKYDDVATIEEV-VELPLATYERVAEAAMACYKTLKCSVYARVDMMI--K 234

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
               + +E+N  PGMT  S+ P+ A  AG S+ +LL  ++E +  +R
Sbjct: 235 DGIPYVMEVNTLPGMTKNSLLPKSAHAAGISYNKLLDTIIETSLQVR 281


>gi|90577824|ref|ZP_01233635.1| D-alanylalanine synthetase [Vibrio angustum S14]
 gi|90440910|gb|EAS66090.1| D-alanylalanine synthetase [Vibrio angustum S14]
          Length = 331

 Score =  266 bits (681), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 80/325 (24%), Positives = 146/325 (44%), Gaps = 34/325 (10%)

Query: 3   VLMGGISSEREVSLSSGKACASALED-AGFKVSQIDVDRSVGLVLAHLK----------- 50
           +L GG S+E EVSL S       L+   G   +++++ ++ G + A  +           
Sbjct: 8   LLCGGGSAEHEVSLVSANFIEEQLKTINGVTYTRVEMTKNDGWLDAENRSCELNLDKTLI 67

Query: 51  -------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103
                   D     +HG  GE G +Q++L +  +P+   G  AS    +K+ +K    + 
Sbjct: 68  VGDQEVVIDYVIPCVHGFPGETGDLQSLLTIAGLPFLGCGAEASTNCFNKITTKLWFDAL 127

Query: 104 GVPVCPSILVNRFTMDSQHLIS------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
            +P  P + ++    ++               +K    GSS+G   +  +Q +   +  +
Sbjct: 128 NIPNTPYVFLSENNQEAHQEARDAFSKWGKVFVKAACQGSSVGCYCVTTEQELTDAV--N 185

Query: 158 SSWNHGDQLLIEQYVDGIELTCGV--MGDASL--DVTEIAVPKSDFYSYELKYSSL--NS 211
           +++ + DQ+LIE+ +   EL       GD  +     E++ P   FYSYE KYS+   ++
Sbjct: 186 NAFGYSDQVLIEKAIRPRELEIAAYQYGDELVITKPGEVSCPTDKFYSYEEKYSADSVST 245

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271
           T V    +  D  + ++  A  A   +  + +SR DF       ++   EIN  PGMTP+
Sbjct: 246 TMVEAENLTEDQIEAIRTYARKAFVQMKLKDLSRIDFFLSE-DNEILLNEINTFPGMTPI 304

Query: 272 SIFPEMAAYAGYSFRELLLWMVEDA 296
           S+FP+M  + G+ F E +   ++ A
Sbjct: 305 SMFPKMLEHHGHKFAEFIEQAIKSA 329


>gi|295695685|ref|YP_003588923.1| D-alanine/D-alanine ligase [Bacillus tusciae DSM 2912]
 gi|295411287|gb|ADG05779.1| D-alanine/D-alanine ligase [Bacillus tusciae DSM 2912]
          Length = 397

 Score =  266 bits (681), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 103/366 (28%), Positives = 155/366 (42%), Gaps = 74/366 (20%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL----VLAHLK------ 50
           +AV+ GG S E EVS+ + +     L    + V  + +D+        VLA L+      
Sbjct: 5   IAVIFGGRSVEHEVSIVTAQQIMYQLRRDLYDVMPLYIDKEGAWWTGDVLAKLESFKAAN 64

Query: 51  ---------------------------------------PDLAFNVLHGNFGEDGLVQAI 71
                                                  PD+A    HG +GEDG +Q +
Sbjct: 65  RNAALAQAARVIVVPTPGGGVIEDPQALRGLFRKPRRWTPDVAILATHGTYGEDGCLQGL 124

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QH 122
           LE+  IPYT  G+L SA+ MDK+  K V  + G+PV   I ++R              + 
Sbjct: 125 LEIAGIPYTGPGVLGSAVGMDKILMKDVFRAQGIPVVNYIWIHRDEWHEHPDEVADRVER 184

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGV 181
            +  P  +KP   GSS+GI   +    +   +  ++   +  +LLIEQ  V   E+ C V
Sbjct: 185 ELQYPVFVKPSNLGSSVGIGRAEDRDGLFHAMDVAA--GYDRRLLIEQGVVSPREINCSV 242

Query: 182 MGDAS---LDVTEIAVPKSDFYSYELKYSSLN-----STHVLPAKIPLDIYKEVQRLAFL 233
           + D     + + E  V    F SYE KY   N     +   +PA +P  + + VQ LA  
Sbjct: 243 LADGQDLRVSLCEEPVSWEAFLSYEDKYIRGNFTKGQTGRRIPADLPDGVTEAVQELARR 302

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           A +AI  RG++R DFL  P    ++  EIN  PG     +       +G SF +LL  ++
Sbjct: 303 AFRAIQARGVARVDFLLSP-DGSIYVNEINTIPGSLSFYL----WEPSGVSFPDLLDKLI 357

Query: 294 EDASCL 299
           EDA   
Sbjct: 358 EDALAD 363


>gi|295132690|ref|YP_003583366.1| D-alanyl-alanine synthetase A [Zunongwangia profunda SM-A87]
 gi|294980705|gb|ADF51170.1| D-alanyl-alanine synthetase A [Zunongwangia profunda SM-A87]
          Length = 324

 Score =  266 bits (680), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 95/324 (29%), Positives = 165/324 (50%), Gaps = 34/324 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           +A+ MGG SSE  +S++SG      L+   ++  ++ + ++   V+AH            
Sbjct: 5   IAIAMGGFSSEYRISINSGNMVYENLDRNKYEPYRVHILQNEWFVVAHDDTPYPINKNDF 64

Query: 49  --------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
                   +K D  FN +HG  GE+GL+QA LELL IP T +    SAL+ +K     V+
Sbjct: 65  TVKMGTEIIKFDCVFNTIHGTPGENGLLQAYLELLNIPQTAANHYQSALTFNKRDLISVL 124

Query: 101 SSCGVPVCPSILVNRFTM----DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
              G+    +  +N+       +    +  P  +K  + GSS GI  +K+   +      
Sbjct: 125 KPYGIKSAKNYFLNKEDAINPDEIIKKVGLPCFVKANRAGSSFGITKVKQKNELYRAAQN 184

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNST 212
             ++   D+ +IE ++DG E++ GV+       +L VTEI V +++F+ YE KY    S 
Sbjct: 185 --AFQEDDEAIIESFLDGTEVSVGVITYNREIIALPVTEI-VSENEFFDYEAKYL-GKSQ 240

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
            + PA+I     K+VQ +A L ++ +  +G +RS+F+F   + +  ++E+N  PG++  S
Sbjct: 241 EITPARISEKDTKKVQEIAKLIYKKLKMKGFTRSEFIFH--NGEPHFIEMNTTPGLSQAS 298

Query: 273 IFPEMAAYAGYSFRELLLWMVEDA 296
           I P+ AA AG S ++L    +E +
Sbjct: 299 ILPQQAAKAGISLQDLYGSAIEAS 322


>gi|170739250|ref|YP_001767905.1| D-alanyl-alanine synthetase A [Methylobacterium sp. 4-46]
 gi|190359166|sp|B0UB90|DDL_METS4 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|168193524|gb|ACA15471.1| D-alanine--D-alanine ligase [Methylobacterium sp. 4-46]
          Length = 382

 Score =  266 bits (680), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 91/345 (26%), Positives = 154/345 (44%), Gaps = 54/345 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           +A+L GG S+E EVS+ S    A AL+   + V+ I +D+  G                 
Sbjct: 5   VALLFGGRSAEHEVSIVSAGNVARALDPDRYAVTPIAIDKETGAWRLCPPLAPGEAPAMV 64

Query: 47  ------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
                                        D+   VLHG  GEDG VQ  L+L  +PY  S
Sbjct: 65  REGPRVAFLPGGGGRLAVLGETASVSEPFDVVVPVLHGPNGEDGTVQGALDLAGVPYVGS 124

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVN-----RFTMDSQHLISPPYVIKPLKGGS 137
           G++ SA +MDK  +K+++   G+P+ P ++        +T   + L S    +KP   GS
Sbjct: 125 GVIGSAAAMDKDVAKRLMRDAGLPIVPYLVAGPRRGVAYTEAVEALESRTLFVKPANMGS 184

Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASL-----DVTE 191
           S+G+  +    +   D   + ++ + +++LIE+ V    E+   V+  A          E
Sbjct: 185 SVGVSRV--ADAGQFDQALAHAFAYDEKILIERAVPRAREIEFAVLETAEGEVRVSPPGE 242

Query: 192 IAV-PKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
           IA      FY Y+ KY     +  ++PA +   + + +  LA  A +A+ C G++R D  
Sbjct: 243 IAPAAAHGFYGYDAKYVDPDGAALLIPASLAPALAERMGGLAARAFEALACAGLARVDLF 302

Query: 250 FDPLS-RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            DP     +F  E+N  PG T +S++P++   AG +   L+  ++
Sbjct: 303 LDPDDPEGIFVNEVNTLPGFTAISMYPKLWDAAGLAPPALMDALI 347


>gi|148256670|ref|YP_001241255.1| D-alanyl-alanine synthetase A [Bradyrhizobium sp. BTAi1]
 gi|190359115|sp|A5EMF5|DDL_BRASB RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|146408843|gb|ABQ37349.1| D-alanine--D-alanine ligase [Bradyrhizobium sp. BTAi1]
          Length = 367

 Score =  266 bits (680), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 84/353 (23%), Positives = 152/353 (43%), Gaps = 58/353 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLA------------- 47
           +A+L GG S+E +VS +S      +L+ + + V+ I +      VLA             
Sbjct: 8   VAILFGGRSAEHDVSRASAANIFRSLDASRYAVTLIGITPEGRWVLADAVNARTAQALTV 67

Query: 48  ----------------------------HLKPDLAFNVLHGNFGEDGLVQAILELLEIPY 79
                                        L  D+ F VLHG  GEDG +Q  LEL ++ Y
Sbjct: 68  PPDGPQIVLLPAGQGRALVLGDGAAAPRELTFDVIFPVLHGPNGEDGTMQGALELADVAY 127

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT----MDSQHLIS-PPYVIKPLK 134
             + ++ SA +MDK  +K+++   G+P+ P + +         D+ H +      IKP  
Sbjct: 128 VGARVMGSAAAMDKDVAKRLLRDAGLPIVPFVTMTAAAPVSYEDAVHAVGCSELFIKPAN 187

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMG--DASLDVTE 191
            GSS+GI   +  Q        +  +    ++LIE+ +    E+ C V+   D  +  +E
Sbjct: 188 LGSSVGISKARTPQEFAAACDLALRF--DGKILIERCISPVREIECAVLEHADGEVKASE 245

Query: 192 ----IAVPKSDFYSYELKYSSLN-STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRS 246
               +      FYSY  KY+  + ++  +PA++   + + ++++A      + C  ++R 
Sbjct: 246 LGEIVPASSHGFYSYAAKYTDASGASLHVPAQVEPGLAQRIRKMATEVFGVLCCESLARV 305

Query: 247 DFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
           DF       +V+  E+N  PG T +S++P+M    G     L+  ++  A   
Sbjct: 306 DFFVH--GEEVYVNEVNTLPGFTNISMYPKMWEATGLPQPALMDALIAHALAR 356


>gi|260777626|ref|ZP_05886519.1| D-alanine--D-alanine ligase [Vibrio coralliilyticus ATCC BAA-450]
 gi|260605639|gb|EEX31924.1| D-alanine--D-alanine ligase [Vibrio coralliilyticus ATCC BAA-450]
          Length = 329

 Score =  266 bits (680), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 92/326 (28%), Positives = 147/326 (45%), Gaps = 33/326 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDVDRSVGLVLAHL---------- 49
           + +L GG S+E EVSL S     S LE    F+V ++++          L          
Sbjct: 6   ILLLCGGGSAEHEVSLVSADFVQSQLELTPDFEVIRVEMKPEGWYQGEQLVYLDTNAGTL 65

Query: 50  -------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS 102
                  K D     +HG  GE G +Q++LEL  IPY   G  AS  S +K+ SK    +
Sbjct: 66  NSEVNATKLDFVVPCIHGFPGETGDIQSMLELTGIPYLGCGPEASTNSFNKITSKLWYDA 125

Query: 103 CGVPVCPSILVNRFTMDS--QHLISP----PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
             +P  P I ++     +  Q L +        +K  + GSS+G   + +   +   +  
Sbjct: 126 LSIPNTPYIFLSENNKQAYDQSLAAFEQWGSVFVKAARQGSSVGCYKVTEKDQLQKAI-- 183

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSL--N 210
           + ++ + DQ+L+E+ V   EL                 EI  P+  FYSYE KYS+   +
Sbjct: 184 NDAFGYSDQVLVEKAVKPRELEVAAYEYKGQLHVTPPGEIKAPEDTFYSYEEKYSADSHS 243

Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270
           +T V  + +  D    +Q+ +    + +  R +SR DF   P    V+  E+N  PGMTP
Sbjct: 244 TTDVEASNLTDDQRLIIQQASEKVFKQMRLRHLSRIDFFLTPEGN-VYLNEVNTFPGMTP 302

Query: 271 VSIFPEMAAYAGYSFRELLLWMVEDA 296
           +S+FP+M  ++G  F E L   V+ +
Sbjct: 303 ISMFPKMVEHSGLKFSEFLADCVKSS 328


>gi|297559174|ref|YP_003678148.1| D-alanine/D-alanine ligase [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
 gi|296843622|gb|ADH65642.1| D-alanine/D-alanine ligase [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
          Length = 374

 Score =  266 bits (680), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 88/359 (24%), Positives = 158/359 (44%), Gaps = 65/359 (18%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +AV+ GG SSE E+S  +  +  S ++   +++  + + R+   VL    P         
Sbjct: 10  VAVVFGGRSSEHEISCVTAGSVLSVVDHDRYEIVPVGITRTGNWVLTSGDPESLRIDAGT 69

Query: 52  --------------------------------------DLAFNVLHGNFGEDGLVQAILE 73
                                                 D+   +LHG FGEDG +Q + E
Sbjct: 70  RALPSVSEDGVDLALPFDSAGQLMVVDPVKGPERLAGVDVVLPLLHGPFGEDGTIQGLFE 129

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--------NRFTMDSQHLIS 125
           ++ + Y  +G+ +S+ SMDK+  K ++   G+P    + +         +  +D    + 
Sbjct: 130 MMGVRYAGAGVFSSSASMDKVFMKAMLRGNGIPTSDFVAITDRQWRTERKRVLDDVAELG 189

Query: 126 PPYVIKPLKGGSSLGIIVIK-KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
               +KP + GSS+GI  ++    +  +     ++  H  ++L+E  V G E+ CGV+  
Sbjct: 190 ATVFVKPARAGSSVGISKVEDSSDADAVVAAVEAAREHDPKVLVEAQVVGREVECGVLES 249

Query: 185 ASLDVTEIAVPKS-------DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
                 ++++P         DFY +E KY S +S  + PA++P +    ++ LA    +A
Sbjct: 250 EDGGTPDVSLPAEVHVADGFDFYDFEAKYLSTSSLTI-PAELPEEATARLRALAAEVFEA 308

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +GC G++R DF +      +   E+N  PG TP S FP+M A  G  +  L+  M+  A
Sbjct: 309 MGCEGLARVDFFYTE-DGDILVNELNTMPGFTPASAFPQMWAATGVDYAALVERMISTA 366


>gi|323341782|ref|ZP_08082015.1| D-alanine-D-lactate ligase [Erysipelothrix rhusiopathiae ATCC
           19414]
 gi|322464207|gb|EFY09400.1| D-alanine-D-lactate ligase [Erysipelothrix rhusiopathiae ATCC
           19414]
          Length = 338

 Score =  266 bits (680), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 85/334 (25%), Positives = 145/334 (43%), Gaps = 42/334 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           +A++ G I+SE ++S++S  +         F    + + +       +            
Sbjct: 6   VALVFGSINSEHDISVASAASVLEHFPKEKFDCVPLYIGKDGKWYTGNYTLDMMQSNKLE 65

Query: 49  ------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84
                                   L  D+AF +LHG  GE G VQ +L+   IP+T   +
Sbjct: 66  GHRELYLQFNYDRPGFIYADDQSLLPVDVAFLMLHGRMGEGGQVQGLLKCANIPFTGCDV 125

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
           L+SAL MDK  +  +  + G+ +    L+          +  P ++KP + GSS G+  +
Sbjct: 126 LSSALCMDKGFTHIICEAAGIDMAAYQLITHINDIDFEKVEYPCIVKPSREGSSFGVSYV 185

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVTEI--AVPKSDFYS 201
           +    +    L   ++    ++LIE Y+ G E+  G++  D  L V+E+       + + 
Sbjct: 186 RNYDELLNACL--FAFEFDSRVLIEAYIKGTEVGLGILKTDQELIVSEVDQVNVSGEVFD 243

Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
           ++ KY    +  +  +  P  + KEVQRL  LA   + C   SR DF       ++F  E
Sbjct: 244 FQEKYHPHATETLPVSTFPESVRKEVQRLGELAFNVLDCAQFSRLDFFVTE-DHRIFLNE 302

Query: 262 INVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           +N  PG T  S +P M   AG S+ EL+  M+ED
Sbjct: 303 VNTIPGFTSSSRYPGMLDRAGVSYPELITKMIED 336


>gi|326772852|ref|ZP_08232136.1| D-alanine--D-alanine ligase B [Actinomyces viscosus C505]
 gi|326637484|gb|EGE38386.1| D-alanine--D-alanine ligase B [Actinomyces viscosus C505]
          Length = 315

 Score =  266 bits (680), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 84/307 (27%), Positives = 146/307 (47%), Gaps = 16/307 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG+S ER++SL SG   A  L+  G  V  +D+D      L    PD+ + ++HG
Sbjct: 8   IAVLAGGLSHERDISLRSGHRVAQVLKHLGHTVLVLDIDARTIGSLKTFGPDVVWPLVHG 67

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q IL  L +PY  +       +  K  +K  V + GV    S+ + +     
Sbjct: 68  GPGEDGGLQNILISLGLPYVGTHSDGCQRASFKPTAKASVRTGGVITPDSLTLPQSYFSQ 127

Query: 121 ----------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                        +  P V+KP +GGS LG+        +   ++  + + + ++ LIE+
Sbjct: 128 LGAQEVLTVVAGHLGLPVVVKPHQGGSGLGVSYASTADELRSAMV--ACFAYDERALIER 185

Query: 171 YVDGIELTCGVMGDASLD--VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           YV G EL   V+        +  + V     Y ++ +Y+   S + +PA++   + ++V+
Sbjct: 186 YVAGTELAVSVVDTGEGPRALPPVEVVTDGQYDFDARYNPGRSEYFVPARLDEAVIEKVK 245

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           + A   H  +G   +SR+D + D      +++++NV PGMT  S+ P  A   G S  +L
Sbjct: 246 KTAITVHTTLGLGNLSRTDLILD-DEGTPWFIDVNVIPGMTETSLLPIAAEAEG-SLDDL 303

Query: 289 LLWMVED 295
              +V +
Sbjct: 304 YDALVRN 310


>gi|54302606|ref|YP_132599.1| D-alanyl-alanine synthetase A [Photobacterium profundum SS9]
 gi|46916030|emb|CAG22799.1| putative D-alanine-D-alanine ligase [Photobacterium profundum SS9]
          Length = 330

 Score =  265 bits (679), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 79/325 (24%), Positives = 145/325 (44%), Gaps = 33/325 (10%)

Query: 3   VLMGGISSEREVSLSSGKACASALED-AGFKVSQIDV-----------------DRSVGL 44
           +L GG S+E EVSL S       L++  G   +++++                 DR++ +
Sbjct: 8   LLCGGGSAEHEVSLVSANYIEQQLKNIEGVSYTRVEMKTEGWFDANNALCQLNLDRTLQV 67

Query: 45  VLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCG 104
                  +     +HG  GE G +Q+ LE+  +PY      +S    +K+ +K    +  
Sbjct: 68  GDDKTPINYVIPCVHGYPGETGDLQSFLEMAGLPYLGCDAESSTNCFNKITTKLWFDALN 127

Query: 105 VPVCPSILVNRFTMDSQHLIS------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS 158
           +P  P I ++     +  L +          +K    GSS+G   +     +   +  ++
Sbjct: 128 IPNTPYIFLSENDAAAHELAAKAFDDWGKVFVKAASQGSSVGCYSVANKDELAEAV--NN 185

Query: 159 SWNHGDQLLIEQYVDGIELTCGV--MGDASL--DVTEIAVPKSDFYSYELKYSSL--NST 212
           ++ + +Q+LIE+ +   EL       GD  +     E+A P+  FYSYE KYS+   + T
Sbjct: 186 AFTYSNQVLIEKTIKPRELEIAAYQYGDELVISKPGEVACPEDKFYSYEEKYSTDSHSVT 245

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
            V    +  +  + ++  A  A   +  + +SR DF       ++   EIN  PGMTP+S
Sbjct: 246 TVEAENLTDEQVELIREYALKAFTQMKLKDLSRIDFFLSE-DNEILLNEINTFPGMTPIS 304

Query: 273 IFPEMAAYAGYSFRELLLWMVEDAS 297
           +FP+M  + G+SF   +   ++ A+
Sbjct: 305 MFPKMLEHHGHSFAGFIETAIKTAA 329


>gi|203287658|ref|YP_002222673.1| D-alanine--D-alanine ligase [Borrelia recurrentis A1]
 gi|226696385|sp|B5RR18|DDL_BORRA RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|201084878|gb|ACH94452.1| D-alanine--D-alanine ligase [Borrelia recurrentis A1]
          Length = 364

 Score =  265 bits (679), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 87/342 (25%), Positives = 160/342 (46%), Gaps = 50/342 (14%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDA-GFKVSQIDVDRSVGLV---------------- 45
           ++ GG+S E E+SL S     S+L     + V  I VD+  G+                 
Sbjct: 7   LIFGGVSFEHEISLRSAYGIYSSLLKLDKYNVFSIFVDKVTGIWYLLDSVPSSAELIKRH 66

Query: 46  ----------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
                              L+ D+ F ++HG  GEDG +Q  +++++IP   +GIL SA+
Sbjct: 67  TTSIVNFIPGCGIFVNNKSLEIDVIFPIIHGRTGEDGAIQGFVKMMDIPCVGAGILGSAI 126

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFT---------MDSQHLISPPYVIKPLKGGSSLG 140
           S++K   K ++ S  +PV   I   +            D  + ++ P ++KP   GSS+G
Sbjct: 127 SINKYFCKVLLKSFNIPVVSFIGFKKDDYILNKEGIKEDINNKLNYPVIVKPSVLGSSIG 186

Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV---TEIAVPKS 197
           I V      I   +    ++ +   +++E+++   E+ C V+G+  + +    EI V   
Sbjct: 187 INVAYNVSQIEKYI--EEAFEYDLTVVVEKFIKAREIECAVIGNDQIKIFTPGEIVVQDF 244

Query: 198 DFYSYELKYSS---LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
            FY Y+ KYS+    +    +PA + +    +++  AFL ++ +  RG++R DFL    +
Sbjct: 245 IFYDYDAKYSTVPGDSIVFNIPAHLDMKHLLDIKEYAFLTYKYLELRGMARIDFLISKDT 304

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             ++  E+N  PG T +S+F +M  + G S+  L+  ++  A
Sbjct: 305 NLLYVNEVNTIPGFTDISMFAKMCEHDGLSYESLVDKLITLA 346


>gi|258655502|ref|YP_003204658.1| D-alanine--D-alanine ligase [Nakamurella multipartita DSM 44233]
 gi|258558727|gb|ACV81669.1| D-alanine--D-alanine ligase [Nakamurella multipartita DSM 44233]
          Length = 315

 Score =  265 bits (679), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 98/313 (31%), Positives = 157/313 (50%), Gaps = 18/313 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VL GG+S ER+VSL SG     AL   G +V+  D D  +   L   +PD A   LHG
Sbjct: 5   VVVLAGGLSHERDVSLRSGSRLQDALHGRGLEVTPRDTDGELIDWLTGQRPDAAIVALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
           + GE+G +Q+ILE++ IPY  +      LS +K  +K ++   G      + ++  T   
Sbjct: 65  SRGENGAIQSILEMIGIPYVGTTSTNCRLSYEKNIAKNLMRRHGFATPAWVSLSHSTFRD 124

Query: 121 QHL----------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                        +  P ++KP  GGS+LG   ++    +P  L+   ++ +G+  ++EQ
Sbjct: 125 LGAQTLMGLLVGHLGLPLMVKPQHGGSALGATPVRTADELPAALV--GAFAYGEIAVVEQ 182

Query: 171 YVDGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE 226
           +++G EL   V+    G  +L   EIA P S  + YE +Y++  +T+  PA++   +   
Sbjct: 183 FIEGTELAITVVDRRDGPQALPAVEIA-PHSGVFDYESRYTAGLTTYYTPARLDEAVATA 241

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
              LA  AH+ +G R +SR+D +       V +LE+NV PG+T  S+ P     AG S  
Sbjct: 242 AAELAIGAHRTLGLRDVSRTDAI-AGADGAVHFLEVNVSPGLTETSLLPMAVEAAGGSLG 300

Query: 287 ELLLWMVEDASCL 299
           EL   +VE A   
Sbjct: 301 ELYAGLVERAVAR 313


>gi|163755784|ref|ZP_02162902.1| D-alanylalanine synthetase [Kordia algicida OT-1]
 gi|161324305|gb|EDP95636.1| D-alanylalanine synthetase [Kordia algicida OT-1]
          Length = 318

 Score =  265 bits (679), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 95/324 (29%), Positives = 153/324 (47%), Gaps = 34/324 (10%)

Query: 5   MGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DRSVGL 44
           MGG SSE  +SL +G    + L    +   ++ +                    D SV +
Sbjct: 1   MGGYSSEFAISLKTGTVVYNHLNPEKYNTYKVHIFRDKWVCVTTVGKEFPIDKNDFSVTI 60

Query: 45  VLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCG 104
               +  D  FN +HG+ GEDG +Q  LELLEIP+T  G+  +AL+ +K      +   G
Sbjct: 61  DDIKITFDCVFNAIHGSPGEDGFMQGYLELLEIPHTSCGMYQAALTFNKRDLLATLKPYG 120

Query: 105 VPVCPSILVNRFTMDSQHLI----SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160
           +    S  +N      +  I      P  +K  K GSS G+  + +   +   +  +   
Sbjct: 121 IKCATSYYLNAGDSIDEAAIVAKVGLPCFVKANKAGSSFGVSKVHEISDLKNAIAIAL-- 178

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216
              D+++IE ++DG+E++ GV+        L +TEI V ++DF+ YE KY    S  + P
Sbjct: 179 KEDDEVIIESFLDGVEVSVGVINYKGNVTVLPITEI-VSENDFFDYEAKYL-GKSQEITP 236

Query: 217 AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPE 276
           A+I  ++  +V ++A   ++ +   G SRS+F+F     + + LE+N  PGMT  SI P+
Sbjct: 237 ARISPELSAKVAKVAKKIYEILKLEGFSRSEFIF--KDDEPYLLEVNTIPGMTEESILPQ 294

Query: 277 MAAYAGYSFRELLLWMVEDASCLR 300
            A  AG S   L    VE A   +
Sbjct: 295 QAKEAGISLEALFGNAVELALTKK 318


>gi|90414751|ref|ZP_01222721.1| putative D-alanine-D-alanine ligase [Photobacterium profundum 3TCK]
 gi|90324196|gb|EAS40774.1| putative D-alanine-D-alanine ligase [Photobacterium profundum 3TCK]
          Length = 330

 Score =  265 bits (679), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 79/325 (24%), Positives = 144/325 (44%), Gaps = 33/325 (10%)

Query: 3   VLMGGISSEREVSLSSGKACASALED-AGFKVSQIDV-----------------DRSVGL 44
           +L GG S+E EVSL S       L+   G   +++++                 DR++ +
Sbjct: 8   LLCGGGSAEHEVSLVSANYIEQQLQSIEGVSYTRVEMKTEGWFDSNNVLCQLNLDRTLQI 67

Query: 45  VLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCG 104
                  +     +HG  GE G +Q+ LE+  +PY      +S    +K+ +K    +  
Sbjct: 68  GDEKTPINYVIPCVHGYPGETGDLQSFLEMAGLPYLGCDAESSTNCFNKITTKLWFDALN 127

Query: 105 VPVCPSILVNRFTMDSQHLIS------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS 158
           +P  P + ++     +  L +          IK    GSS+G   +     +   +  ++
Sbjct: 128 IPNTPYVFLSENDDAAHELAAKAFDDWGKVFIKAASQGSSVGCYSVANKDELAEAV--NN 185

Query: 159 SWNHGDQLLIEQYVDGIELTCGV--MGDASL--DVTEIAVPKSDFYSYELKYSSL--NST 212
           ++ + +Q+LIE+ +   EL       GD  +     E+A P+  FYSYE KYS+   + T
Sbjct: 186 AFTYSNQVLIEKTIKPRELEIAAYQYGDELVISKPGEVACPEDKFYSYEEKYSTDSHSVT 245

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
            V    +  +  + ++  A  A   +  + +SR DF       ++   EIN  PGMTP+S
Sbjct: 246 TVEAENLTDEQVELIREYARKAFTQMKLKDLSRIDFFLSE-DNEILLNEINTFPGMTPIS 304

Query: 273 IFPEMAAYAGYSFRELLLWMVEDAS 297
           +FP+M  + G+SF   +   ++ A+
Sbjct: 305 MFPKMLEHHGHSFAGFIETAIKAAA 329


>gi|89076629|ref|ZP_01162932.1| D-alanylalanine synthetase [Photobacterium sp. SKA34]
 gi|89047711|gb|EAR53313.1| D-alanylalanine synthetase [Photobacterium sp. SKA34]
          Length = 331

 Score =  265 bits (678), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 79/325 (24%), Positives = 149/325 (45%), Gaps = 34/325 (10%)

Query: 3   VLMGGISSEREVSLSSGKACASALED-AGFKVSQIDVDRSVGLVLAHLK----------- 50
           +L GG S+E EVSL S       L+  +G   +++++ ++ G + A  +           
Sbjct: 8   LLCGGGSAEHEVSLVSANFIEEQLKTISGVTYTRVEMTKNDGWLDAENRSCELNLDKTLI 67

Query: 51  -------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103
                   D     +HG  GE G +Q++L +  +P+   G  AS    +K+ +K    + 
Sbjct: 68  LGDQEVVIDYVIPCVHGFPGETGDLQSLLTIAGLPFLGCGAEASTNCFNKITTKLWFDAL 127

Query: 104 GVPVCPSILVNRFTMDSQHLISP------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
            +P  P + ++    ++    S          +K    GSS+G   +  +Q +   +  +
Sbjct: 128 NIPNTPYVFLSENNQEAHKEASEAFKKWGKVFVKAACQGSSVGCYSVMSEQELTEAV--N 185

Query: 158 SSWNHGDQLLIEQYVDGIELTCGV--MGDASL--DVTEIAVPKSDFYSYELKYSSL--NS 211
           +++ + DQ+LIE+ +   EL       GD  +     E++ P   FYSYE KYS+   ++
Sbjct: 186 NAFGYSDQVLIEKAIRPRELEIAAYQYGDELVITKPGEVSCPTDKFYSYEEKYSADSVST 245

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271
           T V    +  +  + ++  A  A   +  + +SR DF       ++   EIN  PGMTP+
Sbjct: 246 TMVEAENLTEEQVEAIRTYARKAFVQMKLKDLSRIDFFLSE-DNEILLNEINTFPGMTPI 304

Query: 272 SIFPEMAAYAGYSFRELLLWMVEDA 296
           S+FP+M  + G +F + +   +++A
Sbjct: 305 SMFPKMLEHNGQTFADFIEQAIKNA 329


>gi|254994496|ref|ZP_05276686.1| D-alanyl-alanine synthetase A [Listeria monocytogenes FSL J2-064]
          Length = 318

 Score =  265 bits (678), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 73/270 (27%), Positives = 138/270 (51%), Gaps = 17/270 (6%)

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           S  ++ A  +  + F +LHG  GEDG VQ + E+L IPY  +G+LAS+ +MDK+  K++ 
Sbjct: 36  SPAVLEADGQETVVFPLLHGPNGEDGTVQGLFEVLNIPYVGNGVLASSAAMDKIVMKKIF 95

Query: 101 SSCGVPVCPSILVN---------RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
           +  G+P  P++ V              + + +++ P  +KP   GSS+GI      + + 
Sbjct: 96  ADAGIPQVPAVAVRLIDWKNYQAEMVAEMEEVLTYPVFVKPANLGSSVGISKATNKKEL- 154

Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--DVTEIAVPKS---DFYSYELKY 206
                + ++ +  ++++EQ V   E+  GV+G+ +    V    +P+     FY Y+ KY
Sbjct: 155 -ADAMTEAFLYDRRVVVEQGVVAREIEMGVLGNDTPVCSVPGEILPEGAVATFYDYKAKY 213

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
              N+  ++P ++  +I ++++  A  A   +   G+ R+DF       ++F  E+N  P
Sbjct: 214 QDNNTALIIPTEVDPEILEQMKEYAVQAFLGLDASGLVRADFFLTE-DNQLFLNEVNTMP 272

Query: 267 GMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           G TP S++P +    G  +  L+  +V+ A
Sbjct: 273 GFTPYSMYPLLWQETGLPYGALIERLVDLA 302


>gi|330448329|ref|ZP_08311977.1| D-alanine--D-alanine ligase family protein [Photobacterium
           leiognathi subsp. mandapamensis svers.1.1.]
 gi|328492520|dbj|GAA06474.1| D-alanine--D-alanine ligase family protein [Photobacterium
           leiognathi subsp. mandapamensis svers.1.1.]
          Length = 331

 Score =  265 bits (678), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 81/325 (24%), Positives = 149/325 (45%), Gaps = 34/325 (10%)

Query: 3   VLMGGISSEREVSLSSGKACASALED-AGFKVSQIDVDRSVGLVLAHLKP---------- 51
           +L GG S+E EVSL S       L+   G   +++++ ++ G + +  +P          
Sbjct: 8   LLCGGGSAEHEVSLVSANFIEEQLKTINGVTYTRVEMTKNDGWLDSENRPCELNLDKTLI 67

Query: 52  --------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103
                   D     +HG  GE G +Q++L L  +P+   G  AS    +K+ +K    + 
Sbjct: 68  VGDQEVAIDYVIPCVHGFPGETGDLQSLLTLAGLPFLGCGAEASTNCFNKITTKLWFDAL 127

Query: 104 GVPVCPSILVNRFTMDSQHLISP------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
            +P  P + ++  + ++               +K    GSS+G   +  +Q +   +  +
Sbjct: 128 NIPNTPYVFLSENSQEAHQEALEAFKKWGKVFVKAACQGSSVGCYCVTTEQELTDAV--N 185

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYSSL--NS 211
           +++ + DQ+LIE+ +   EL          L +T   E++ P   FYSYE KYSS   ++
Sbjct: 186 NAFGYSDQVLIEKAIRPRELEIAAYQYGEELVITKPGEVSCPTDKFYSYEEKYSSDSLST 245

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271
           T V    +  +  + ++  A  A   +  + +SR DF       ++   EIN  PGMTP+
Sbjct: 246 TKVEADNLTEEQVEAIRTYARKAFVQMKLKDLSRIDFFLSE-DDEILLNEINTFPGMTPI 304

Query: 272 SIFPEMAAYAGYSFRELLLWMVEDA 296
           S+FP+M  + G+ F E +   +++A
Sbjct: 305 SMFPKMLEHHGHKFAEFIEQAIKNA 329


>gi|315605519|ref|ZP_07880556.1| D-alanine-D-alanine ligase [Actinomyces sp. oral taxon 180 str.
           F0310]
 gi|315312786|gb|EFU60866.1| D-alanine-D-alanine ligase [Actinomyces sp. oral taxon 180 str.
           F0310]
          Length = 335

 Score =  265 bits (678), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 88/313 (28%), Positives = 165/313 (52%), Gaps = 19/313 (6%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62
           ++ GG++ ER+VS+ SG+  A+ L   G++V + DVD S+   +   +PD+ + ++HG+ 
Sbjct: 7   IIAGGLTHERDVSVRSGRRVANILAQFGYEVMRSDVDASLTESIQTFEPDVVWPLVHGSI 66

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-- 120
           GEDG +Q+ LE + +P+  S  + + L+ +K  +K ++ S GV     + + +       
Sbjct: 67  GEDGSLQSFLESVGVPFVGSSSVQAMLASNKPIAKALLGSAGVATPGWVTLPQAIFRQLG 126

Query: 121 --------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                   +  +S P VIKP  GGS+LGI        +   ++ + +  +G +L++EQ +
Sbjct: 127 ASNVLAALEGSVSFPVVIKPTDGGSALGISTAHNADQLRRAMVDAFA--YGQRLMVEQRI 184

Query: 173 DGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           DG ++   V+    G  +L   EI+      Y Y+ +Y++  + + +PA+   +I  ++Q
Sbjct: 185 DGRDVAVSVVDLWDGPVALPPVEIST-DGGRYDYDARYTTDETEYFVPARFSDEILADLQ 243

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY-AGYSFRE 287
             A  AH  +G R +SR DF+ D      ++++ NV PGMT  S+ P+ A      SF +
Sbjct: 244 AAAVEAHTTLGLRDLSRIDFVVDDA-GTCWFIDANVTPGMTDTSLLPQAADAFDDSSFAQ 302

Query: 288 LLLWMVEDASCLR 300
           L   +++  +  R
Sbjct: 303 LCADIIDFVAEGR 315


>gi|320532833|ref|ZP_08033608.1| D-ala D-ala ligase [Actinomyces sp. oral taxon 171 str. F0337]
 gi|320134948|gb|EFW27121.1| D-ala D-ala ligase [Actinomyces sp. oral taxon 171 str. F0337]
          Length = 315

 Score =  265 bits (678), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 84/307 (27%), Positives = 144/307 (46%), Gaps = 16/307 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG+S ER++SL SG   A  L+  G  V  +D+D      L    PD+ + ++HG
Sbjct: 8   IAVLAGGLSHERDISLRSGHRVAQVLKHLGHTVLVLDIDARTIGSLRTFGPDVVWPLVHG 67

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +L  L +PY  +       +  K  +K  V + GV    S+ + +     
Sbjct: 68  GPGEDGGLQNVLIALGLPYVGTHSDGCQRASFKPTAKASVRTGGVITPDSLTLPQSYFSQ 127

Query: 121 QHL----------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                        +  P V+KP +GGS LG+        +   ++  + + + ++ LIE+
Sbjct: 128 MGAQEVLTVVAGHLGLPVVVKPHQGGSGLGVSYASTADELRSAMV--ACFAYDERALIER 185

Query: 171 YVDGIELTCGVMGDASLD--VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           YV G EL   V+        +  + V     Y ++ +Y+   S + +PA++   + + V+
Sbjct: 186 YVPGTELAVSVVDTGEGPHALPPVEVVTDGQYDFDARYNPGRSEYFVPARLDDAVIETVK 245

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
             A   H  +G   +SR+D + D      +++++NV PGMT  S+ P  A   G S  EL
Sbjct: 246 ATAVTVHTTLGLGNLSRTDLILD-DEGTPWFIDVNVIPGMTETSLLPIAAEAEG-SLEEL 303

Query: 289 LLWMVED 295
              +V +
Sbjct: 304 YDALVRN 310


>gi|203284120|ref|YP_002221860.1| D-alanine--D-alanine ligase [Borrelia duttonii Ly]
 gi|226696384|sp|B5RL25|DDL_BORDL RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|201083563|gb|ACH93154.1| D-alanine--D-alanine ligase [Borrelia duttonii Ly]
          Length = 364

 Score =  265 bits (678), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 86/342 (25%), Positives = 160/342 (46%), Gaps = 50/342 (14%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDA-GFKVSQIDVDRSVGLV---------------- 45
           ++ GG+S E E+SL S     S+L     + V  + VD+  G+                 
Sbjct: 7   LIFGGVSFEHEISLRSAYGIYSSLLKLDKYNVFSVFVDKVTGIWYLLDSVPSSAELIKRH 66

Query: 46  ----------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
                              L+ D+ F ++HG  GEDG +Q  +++++IP   +GIL SA+
Sbjct: 67  TTSIVNFIPGCGIFVNNKSLEIDVIFPIIHGRTGEDGAIQGFVKMMDIPCVGAGILGSAI 126

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFT---------MDSQHLISPPYVIKPLKGGSSLG 140
           S++K   K ++ S  +PV   I   +            D  + ++ P ++KP   GSS+G
Sbjct: 127 SINKYFCKVLLKSFNIPVVSFIGFKKDDYILNKEGIKEDINNKLNYPVIVKPSVLGSSIG 186

Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV---TEIAVPKS 197
           I V      I   +    ++ +   +++E+++   E+ C V+G+  + +    EI V   
Sbjct: 187 INVAYNVSQIEKYI--EEAFEYDLTVVVEKFIKAREIECAVIGNDQIKIFTPGEIVVQDF 244

Query: 198 DFYSYELKYSS---LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
            FY Y+ KYS+    +    +PA + +    +++  AFL ++ +  RG++R DFL    +
Sbjct: 245 IFYDYDAKYSTVPGDSIVFNIPAHLDMKHLLDIKEYAFLTYKYLELRGMARIDFLISKDT 304

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             ++  E+N  PG T +S+F +M  + G S+  L+  ++  A
Sbjct: 305 NLLYVNEVNTIPGFTDISMFAKMCEHDGLSYESLVDKLITLA 346


>gi|163839625|ref|YP_001624030.1| D-alanine--D-alanine ligase [Renibacterium salmoninarum ATCC 33209]
 gi|162953101|gb|ABY22616.1| D-alanine--D-alanine ligase [Renibacterium salmoninarum ATCC 33209]
          Length = 365

 Score =  265 bits (678), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 96/329 (29%), Positives = 151/329 (45%), Gaps = 31/329 (9%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50
           +AV+ GG+SSE +VSL+S +   +A    G +V    +D      +  +           
Sbjct: 36  IAVIGGGVSSEHDVSLASSEGTRAAAAALGHRVHFFLIDSDGEWSVDGVPGTTAAWEKLR 95

Query: 51  -PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109
             DLA  ++HG  GEDG++Q  LE + + Y  SG+L+SA+ +DK  +K V  + GV   P
Sbjct: 96  SCDLAIPMVHGAGGEDGVLQGFLETVGVSYFGSGVLSSAVGLDKQVTKLVAHTVGVRTAP 155

Query: 110 SILVNRFTMD-------------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
            + ++    D                 I  P  +KPL+GGSS GI  + +  ++   +  
Sbjct: 156 GLTIDATLRDQLAETPDQAENLLKSAKIELPVFVKPLRGGSSFGISKVTEQLNLADAVKL 215

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV------PKSDFYSYELKYSSLN 210
           ++       +LIE  V G E+  GV+      V            K +F+S E KYSS  
Sbjct: 216 AAHGPVEQDVLIEPEVRGKEVDVGVLELPDCSVIVGPCLQVLADSKEEFFSTEAKYSSTE 275

Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270
           +  ++PA I  +    ++  A     A+GCRG++R DF  D         EIN  PG T 
Sbjct: 276 TRFLVPAPIGDEASAAIRAQAKAVFTALGCRGLARVDFFVD-DDGTATLNEINTLPGFTS 334

Query: 271 VSIFPEMAAYAGYSFRELLLWMVEDASCL 299
            S  P + A AG ++  L+  ++E A   
Sbjct: 335 HSQVPRIWAAAGVNYEGLVAIIIETALAR 363


>gi|302379949|ref|ZP_07268428.1| D-ala D-ala ligase N-terminal domain protein [Finegoldia magna
           ACS-171-V-Col3]
 gi|302312175|gb|EFK94177.1| D-ala D-ala ligase N-terminal domain protein [Finegoldia magna
           ACS-171-V-Col3]
          Length = 350

 Score =  265 bits (677), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 75/336 (22%), Positives = 149/336 (44%), Gaps = 44/336 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH-----LKPD--- 52
           + VL GG S+E EVS++S +   + L    + V+ I V R    ++       +K D   
Sbjct: 5   IYVLYGGPSTEHEVSITSARTLINNLSKEKYNVNAIFVRRDKKFIMKENITEEIKSDEEL 64

Query: 53  ------------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
                                   + F  +HG++GEDG +Q  +++L++P+    +L SA
Sbjct: 65  ILDTDLSVIESVSDCISKINPENTVIFPAIHGSYGEDGTIQGFIKVLDLPFVGCNVLGSA 124

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTM----DSQHLISPPYVIKPLKGGSSLGIIVI 144
           L MDK  +  +     +P    +++ +       +     S    +KP   GSS+G++  
Sbjct: 125 LCMDKGYTNDIFELNKIPQAKYVVLCKNDDYNLKEIFEKTSKAVYVKPCNAGSSVGVMRA 184

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV---PKSDFYS 201
           + ++ +   +    ++ +  ++L+E+ + G EL   VMG+ +   +   V      +F+ 
Sbjct: 185 ETEEELEKAIQN--AFQYDRRILVEEEIIGPELQIAVMGNDNPVASRPGVYQIHDVEFFD 242

Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
           Y+ KY+   +  + P  +   +  + + LA   ++ +   G SR D        +++  E
Sbjct: 243 YDAKYNDSKTEMLTPFPMDEKLELKARHLAEKVYKLMSLSGFSRVDMFV--KDNELWVNE 300

Query: 262 INVQPGMTPVSIFPEMAAYAG-YSFRELLLWMVEDA 296
           IN  PG+TP S+FP +       S  E+   +++ A
Sbjct: 301 INTVPGLTPHSMFPVLWKCTNDMSVSEVFDNLIDLA 336


>gi|262340912|ref|YP_003283767.1| D-Alanine-D-alanine ligase [Blattabacterium sp. (Blattella
           germanica) str. Bge]
 gi|262272249|gb|ACY40157.1| D-Alanine-D-alanine ligase [Blattabacterium sp. (Blattella
           germanica) str. Bge]
          Length = 327

 Score =  264 bits (676), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 94/328 (28%), Positives = 165/328 (50%), Gaps = 38/328 (11%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40
           +AV+MGG + E  +SL SGK     L    F+  ++ +                    D 
Sbjct: 4   IAVIMGGYTKESAISLQSGKVVYENLCREEFEPYKVYIFEEKWFMKDEQNKEYTVDKYDF 63

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           SV +    ++ D  FN +HG  GEDGL+QA  ELL IPYT      + ++ +K     ++
Sbjct: 64  SVDIGSKRIQFDCVFNAIHGTPGEDGLLQAYFELLRIPYTGCNFHHANMTFNKKYCLTLL 123

Query: 101 SSCGVPVCPSILVNRFTMDSQHLI----SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
              G+    SI +N+  +  +  I      P  +KP + GSSLGI  + ++  +   + +
Sbjct: 124 RHFGINTAVSIFLNKNQIFCKEKILKKVGLPCFVKPNRSGSSLGISKVYEETDLFNAVKK 183

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNST 212
             ++   ++++IE +++G E++ GV         L +TEI + ++DF+ +E KYS   S 
Sbjct: 184 --AFKEDEEIIIESFLEGREVSVGVFSFKNKIFVLPITEI-ISQNDFFDFESKYS-GKSQ 239

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
            + PAK+   I  ++Q +A   +  +   GISRS+++   ++ + ++LEIN  PG++  S
Sbjct: 240 EITPAKLLPSIQNKIQEIAKKVYNYLNLSGISRSEYII--VNGEPYFLEINTVPGLSEES 297

Query: 273 IFPEMAAYAGYS----FRELLLWMVEDA 296
           IFP+    AG S    F+  + + +E A
Sbjct: 298 IFPKQLKTAGISLSYFFKNCINYSIEKA 325


>gi|87302973|ref|ZP_01085777.1| D-alanine--D-alanine ligase [Synechococcus sp. WH 5701]
 gi|87282469|gb|EAQ74428.1| D-alanine--D-alanine ligase [Synechococcus sp. WH 5701]
          Length = 373

 Score =  264 bits (676), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 92/354 (25%), Positives = 154/354 (43%), Gaps = 60/354 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALED----AGFKVSQIDVDRSVGLVLAHL------- 49
           + ++ GG S E  VS+ S       L +      ++V    +DR        L       
Sbjct: 8   VGLVFGGASDEHAVSIRSAITVVGGLREGENLLRYRVRPFYIDRRGRWWGPELAEAVLSS 67

Query: 50  -------------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIP 78
                                            D+ F VLHG  GEDG +Q +  L+++P
Sbjct: 68  AEPAPDEQLNETAADQPLGGAGFQGLPPEAAGVDVWFPVLHGPNGEDGTIQGLFALMQVP 127

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYV 129
           +  SG+L SAL MDK   K   ++ G+P  P   V    +           +  +  P  
Sbjct: 128 FVGSGVLGSALGMDKQAMKAAFAAAGLPQVPYAAVQAADLRHDPEGLLQRLERDLGYPCF 187

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL-- 187
           +KP   GSS+GI       S+   L  +++     +L++EQ V   EL C V+G  +   
Sbjct: 188 VKPANMGSSVGISKASDRSSLLQGLELAAAL--DPRLVVEQGVTARELECAVLGQGAAAG 245

Query: 188 -----DVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
                 V       +D+Y YE KY++  S+ V+PA++P  + + ++ +A  A  A+   G
Sbjct: 246 GGLKASVVGEIRFSADWYDYETKYTAGLSSTVIPAELPEAVSERLRAMALQACAAVATEG 305

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           ++R DF +D  +++++  EIN  PG T  S++P + A +G    +L+  +VE A
Sbjct: 306 LARVDFFYDEAAQRLWLNEINTLPGFTSQSMYPMLWAASGVPLVDLVHQLVESA 359


>gi|254507725|ref|ZP_05119857.1| D-alanine--D-alanine ligase [Vibrio parahaemolyticus 16]
 gi|219549422|gb|EED26415.1| D-alanine--D-alanine ligase [Vibrio parahaemolyticus 16]
          Length = 330

 Score =  264 bits (676), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 88/327 (26%), Positives = 146/327 (44%), Gaps = 34/327 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDA-GFKVSQIDVDRS------------------ 41
           + +L GG SSE EVS+ S     S L+    F V ++++                     
Sbjct: 6   ILLLCGGGSSEHEVSILSANFIQSQLQKTPEFNVVRVEMKPDGWYTDGGALAYLDTNAGT 65

Query: 42  VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +    + +K D     +HG  GE G +Q++LEL  IPY   G  AS  S +K+ SK    
Sbjct: 66  LNTDESTIKLDFVVPCIHGYPGETGDIQSMLELSGIPYLGCGPEASTNSFNKITSKLWYD 125

Query: 102 SCGVPVCPSILVNRFTMDSQHLISPPY------VIKPLKGGSSLGIIVIKKDQSIPLDLL 155
           + G+P  P + ++     +               +K  + GSS+G   +  +  +   L 
Sbjct: 126 ALGIPNTPYLFLSNNDDIAYAQTKEALAKWGTIFVKAARQGSSVGCYKVSDESQLKQSL- 184

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKY--SSL 209
            + ++ + DQ+L+E+ V   EL                 EI  P+  FYSYE KY  SS 
Sbjct: 185 -NDAFGYSDQVLVEKAVKPRELEVAAYEYQGQLYVSKPGEIKAPEDAFYSYEEKYSASSH 243

Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
           ++T V    +     + ++  +      +  R +SR DF   P   +++  E+N  PGMT
Sbjct: 244 STTDVEAENLTEQQLETIRVNSLKVFTQMRLRHLSRIDFFLTP-EGEIYLNEVNTFPGMT 302

Query: 270 PVSIFPEMAAYAGYSFRELLLWMVEDA 296
           P+S+FP+M  + G+SF E L   V+++
Sbjct: 303 PISMFPKMLEHNGHSFSEFLADCVKNS 329


>gi|288803981|ref|ZP_06409403.1| D-alanine--D-alanine ligase [Prevotella melaninogenica D18]
 gi|288333551|gb|EFC72004.1| D-alanine--D-alanine ligase [Prevotella melaninogenica D18]
          Length = 332

 Score =  264 bits (676), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 85/326 (26%), Positives = 149/326 (45%), Gaps = 35/326 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40
           +A++ GG SSE +VS+ SG+   S  +   + +  +DV                    D 
Sbjct: 8   IAIVCGGDSSEHDVSMRSGQGLYSFFDKERYNIYIVDVKGIDWNVELPDGSLAPIDKNDF 67

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           S  +    ++ D A+  +HG  GE+G++Q   +L+++PY+  G+L  AL+ DK      +
Sbjct: 68  SFVMNGERVEFDYAYITIHGQPGENGVMQGYFDLIQLPYSTGGVLVEALTFDKYVLNNYL 127

Query: 101 SSCGVPVCPSILVNR----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
              G+ V  SIL+ R       + +  +  P  +KP   GSS G+  +K    +   L  
Sbjct: 128 RGFGIKVADSILLRRGEEYDEAEIEKRLGMPCFVKPASDGSSFGVSKVKNIDQLAPAL-- 185

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNST 212
             ++   D+++IE ++DG+E++ GV            TE+ V  ++F+ Y  KY+     
Sbjct: 186 RVAFMQSDEVMIEAFMDGMEISQGVYKTKDKAVVFPATEV-VTSNEFFDYNAKYN-GQVE 243

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK---VFWLEINVQPGMT 269
            + PA++  +  K V       +  +   GI R D++          +  LEIN  PGMT
Sbjct: 244 EITPARMSDETAKRVAAETSRIYDILHANGIIRIDYIISKDKDGKDVINMLEINTTPGMT 303

Query: 270 PVSIFPEMAAYAGYSFRELLLWMVED 295
             S  P+    AG   + +L  +VE+
Sbjct: 304 VTSFIPQQVRAAGLDIKNVLSDIVEN 329


>gi|261251191|ref|ZP_05943765.1| D-alanine--D-alanine ligase [Vibrio orientalis CIP 102891]
 gi|260938064|gb|EEX94052.1| D-alanine--D-alanine ligase [Vibrio orientalis CIP 102891]
          Length = 330

 Score =  264 bits (676), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 94/327 (28%), Positives = 147/327 (44%), Gaps = 34/327 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDA-GFKVSQIDVDRS------------------ 41
           + +L GG SSE EVSL S     S LE    F V ++++                     
Sbjct: 6   ILLLCGGGSSEHEVSLVSANFLQSQLEQTPEFNVVRVEMKTDGWYTDSGDLAYLDSNSGT 65

Query: 42  VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +       K D     +HG  GE G +Q++LEL  IPY   G  AS  S +K+ SK    
Sbjct: 66  LNTDSQQTKLDFVVPCIHGFPGETGDIQSMLELSGIPYLGCGPEASTNSFNKITSKLWYD 125

Query: 102 SCGVPVCPSILVNRFTMDSQHLISPP------YVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
           + G+P  P I ++  +  +  L            +K  + GSS+G   + +   +   L 
Sbjct: 126 ALGIPNTPYIFLSENSQQAYELSEQAFEKWGSVFVKAARQGSSVGCYKVTELSQLQAALD 185

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYSSL-- 209
              ++ + DQ+L+EQ V   EL       D  L +T   EI  P+  FYSYE KYS+   
Sbjct: 186 N--AFGYSDQVLVEQAVKPRELEVAAYELDGELHITAPGEIIAPEDAFYSYEEKYSTESH 243

Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
           ++T V+   +  +    ++  +      +  R +SR DF   P   +++  E+N  PGMT
Sbjct: 244 STTKVVATDLNDEQLAVIRTSSEKVFTQMRLRHLSRIDFFLTPS-GEIYLNEVNTFPGMT 302

Query: 270 PVSIFPEMAAYAGYSFRELLLWMVEDA 296
           P+S+FP+M    G+SF   L   V+ +
Sbjct: 303 PISMFPKMLENNGHSFAAFLANCVKTS 329


>gi|237807008|ref|YP_002891448.1| D-alanyl-alanine synthetase A [Tolumonas auensis DSM 9187]
 gi|259645175|sp|C4L8J2|DDL_TOLAT RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|237499269|gb|ACQ91862.1| D-alanine/D-alanine ligase [Tolumonas auensis DSM 9187]
          Length = 330

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 85/323 (26%), Positives = 147/323 (45%), Gaps = 33/323 (10%)

Query: 3   VLMGGISSEREVSLSSGKACASALED-AGFKVSQID-----------------VDRSVGL 44
           +L GG  SE E+SL S     S L++ A   V++++                 +DR +  
Sbjct: 8   LLCGGGGSEHEISLLSANYLESQLKELAEVSVTRVELFPDHWQTNDGRSCHLGMDRQLHF 67

Query: 45  VLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCG 104
                  D     +HG  GE G +Q++LEL+ +PY   G   S L  +K+ +K  +S+  
Sbjct: 68  ANEAKPVDFVVPCIHGFPGETGDIQSMLELIGLPYLGCGSEGSKLCFNKVSTKLWLSALD 127

Query: 105 VPVCPSILVNRFTMDSQHLIS------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS 158
           +P  P + ++     +               +K    GSS+G   +     +   +  ++
Sbjct: 128 IPNTPFLFLSDNNEAAHAQAHTAFRNWGAVFVKAASQGSSVGCYKVTDAAKLSEAV--NA 185

Query: 159 SWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYSSL--NST 212
           ++ + DQ+L+E+ V   EL   V   +  L  T   EIA P   FYSYE KYSS   ++T
Sbjct: 186 AFGYSDQVLVEKAVRPRELEVAVYRYNDQLVATRPGEIATPSDSFYSYEEKYSSGSNSTT 245

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
           ++    +       ++  A  A   +G + +SR DF       ++   EIN  PGMTP+S
Sbjct: 246 YLEAPGLSDAQISTIREYALKAFTQLGLKDLSRIDFFLTE-DNEILLNEINTFPGMTPIS 304

Query: 273 IFPEMAAYAGYSFRELLLWMVED 295
           +FP++  + G +F++ L  ++  
Sbjct: 305 MFPKLLEHHGDNFKQFLEGIIRS 327


>gi|295108990|emb|CBL22943.1| D-alanine--D-alanine ligase [Ruminococcus obeum A2-162]
          Length = 344

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 95/338 (28%), Positives = 151/338 (44%), Gaps = 49/338 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------------------- 38
           + VL GG S+ER+VS+ SG    SAL     +   +DV                      
Sbjct: 3   IVVLAGGTSTERDVSIVSGTGICSALRQKNHQAILVDVFCGLENVDWADPFPESYDVEQA 62

Query: 39  ---DRSVGLVLAHLK-----------------PDLAFNVLHGNFGEDGLVQAILELLEIP 78
               +S    +  LK                  D  F  LHG+ GEDG +QA+ +L+ I 
Sbjct: 63  VSYIKSFNPHIEELKKSRKEFFGPNVLELCKKADFVFLGLHGSNGEDGRLQAVFDLMGIL 122

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFTMDSQHLISPPYVIKPLKG 135
           YT +G L+SA++MDK  +K +    GVP      +   +R     +  +  P V+K   G
Sbjct: 123 YTGTGYLSSAMAMDKGVTKAMFQMRGVPTPGGKAMKKKDRVETLQELGMDFPVVVKTCCG 182

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195
           GSS+G+ ++         L    ++ + +++++E++V+G E T  V+   +  V +I VP
Sbjct: 183 GSSIGVYIVDNQADYTKAL--DGAFTYENEVVVEEFVEGTEYTVAVVDGKAYPVVQI-VP 239

Query: 196 KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255
              FY YE KY         PA I  ++ + +Q  A   + A+      R DF+      
Sbjct: 240 VQGFYDYENKYKPGAVKETCPAPISEELTRRLQEYAVEGYHALEMESYGRLDFIVTK-DE 298

Query: 256 KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           K++ LE N  PGMTP S+ P+ AA  G  +  L   ++
Sbjct: 299 KIYCLEANTLPGMTPTSLIPQEAAVLGMDYPTLCEELI 336


>gi|117929360|ref|YP_873911.1| D-alanine--D-alanine ligase [Acidothermus cellulolyticus 11B]
 gi|117649823|gb|ABK53925.1| D-alanine--D-alanine ligase [Acidothermus cellulolyticus 11B]
          Length = 333

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 100/312 (32%), Positives = 155/312 (49%), Gaps = 19/312 (6%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62
           VL GG+S EREVSL+S +    AL   G  V  +DVD SV   L    PD  F  +HG+ 
Sbjct: 9   VLAGGVSFEREVSLASARRVIEALRRLGVDVDLVDVDASVLDRLTADPPDAVFIAMHGSE 68

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ- 121
           GEDG ++ +L+L  +PY  +    + L+ DK  +K V+ + GV    SI  ++  +    
Sbjct: 69  GEDGALRELLDLAGVPYVGATAAGARLAFDKTVAKAVLQAAGVAAPRSIAFSQTAIRDLG 128

Query: 122 ---------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                      +  P V+KP +GGS+LG+ ++++  +    L+   +  +    L+EQYV
Sbjct: 129 GHQLLDRCVRRLGLPLVVKPARGGSALGVTIVREATAFAHALVTCFA--YDTVALVEQYV 186

Query: 173 DGIELTCGVMGD-----ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227
            G EL   V+ D      +L   EI  P    + Y  +Y++  + + +PA+I        
Sbjct: 187 VGTELAISVVEDDDGTPRALPPVEIR-PVDGMFDYAARYTAGMTEYHVPARITETARDRA 245

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287
             +A  AHQA+G R +SR+D +      +V +LE NV PGMTP S+ P  AA  G     
Sbjct: 246 VDVALRAHQALGLRDLSRTDVIVTA-DDEVLYLETNVAPGMTPTSLLPMAAAEVGIDLGT 304

Query: 288 LLLWMVEDASCL 299
           L   ++  A+  
Sbjct: 305 LCRDLLVRAATR 316


>gi|159040582|ref|YP_001539835.1| D-alanine--D-alanine ligase [Salinispora arenicola CNS-205]
 gi|157919417|gb|ABW00845.1| D-alanine--D-alanine ligase [Salinispora arenicola CNS-205]
          Length = 327

 Score =  263 bits (674), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 91/311 (29%), Positives = 149/311 (47%), Gaps = 18/311 (5%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62
           VL GG+S ER+VSL SG+    AL   G +    D D ++   L    PD     LHG  
Sbjct: 19  VLAGGLSYERDVSLRSGRRVLDALRAVGVEAELRDADVALLPSLVADPPDAVVIALHGAT 78

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ- 121
           GEDG ++ +L+L  +PY      +S L+ DK  +K V+   G+P    + +         
Sbjct: 79  GEDGSLRGVLDLCNVPYVGCDARSSRLAWDKPSAKAVLREAGIPTPDWVALPHDRFSELG 138

Query: 122 ---------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                      +  P ++KP +GGS LG  V++   ++P  ++    + +    L+E+Y+
Sbjct: 139 AVAVLDRIVDRLGLPLMVKPAQGGSGLGAAVVRDGPALPAAMV--GCFAYDSTALVERYL 196

Query: 173 DGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
            G ++   V+    G  +L   EI VP++  Y Y  +Y++  +T   PA++  ++ + V 
Sbjct: 197 PGTDVAVSVIDLGEGPQALPAVEI-VPRNGVYDYAARYTAGRTTWHTPARLDTEVAEAVA 255

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
            +A  AH A+G R +SR D + D    +   L +NV PGMT  S+ P  A  A   F  +
Sbjct: 256 TVAVAAHTALGLRDLSRVDLIVDA-DHQPHVLGVNVAPGMTETSLLPLAAQAASLDFGRM 314

Query: 289 LLWMVEDASCL 299
           +  +V  A   
Sbjct: 315 IGTLVSRAVAR 325


>gi|259506380|ref|ZP_05749282.1| D-alanine--D-alanine ligase [Corynebacterium efficiens YS-314]
 gi|259166021|gb|EEW50575.1| D-alanine--D-alanine ligase [Corynebacterium efficiens YS-314]
          Length = 335

 Score =  263 bits (674), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 89/333 (26%), Positives = 150/333 (45%), Gaps = 57/333 (17%)

Query: 17  SSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP------------------------- 51
            S  A  + L+   ++V  + +      V+    P                         
Sbjct: 1   MSAGAIIAHLDPEKYEVIPVGITTDGAWVVGESDPERLRLVDRTMPEVQRREEIRPSLDP 60

Query: 52  -----------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKM 94
                            D+ F VLHG FGEDG +Q +  L +IP    G+L+SA  MDK 
Sbjct: 61  AHRGEFHFADGSLYATADVIFPVLHGRFGEDGTIQGMFALSDIPVVGPGVLSSAAGMDKE 120

Query: 95  RSKQVVSSCGVPVCPSILVN---RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
            +K+++++ G+P+   +++      T   + L+  P  +KP +GGSS+GI  + + + +P
Sbjct: 121 FTKKLMAAEGLPIGREVILRDRAELTDAEKKLLGLPVFVKPARGGSSIGISKVSRWEDLP 180

Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVM------GDASLDVTEIAV--PKSDFYSYE 203
             +    +  H +++++E  + G E+ CGV+        ASL          +  FY ++
Sbjct: 181 AAVDL--ARQHDEKVIVESEIVGPEVECGVLQYPDGRIVASLPAMLRGTEDGEGGFYDFD 238

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            KY     T  +PA +  +I + VQ LA    QA+ C G++R DF            EIN
Sbjct: 239 TKYLDNVVTAEIPAPLDEEIIELVQSLAVETFQALACEGLARVDFFVTA--NGPVLNEIN 296

Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             PG TP+S++P+M A +G  + ELL  +V+ A
Sbjct: 297 TMPGFTPISMYPQMFAASGVGYEELLDVLVQQA 329


>gi|254479318|ref|ZP_05092657.1| putative D-ala D-ala ligase N-terminal domain protein
           [Carboxydibrachium pacificum DSM 12653]
 gi|214034738|gb|EEB75473.1| putative D-ala D-ala ligase N-terminal domain protein
           [Carboxydibrachium pacificum DSM 12653]
          Length = 383

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 92/359 (25%), Positives = 149/359 (41%), Gaps = 73/359 (20%)

Query: 5   MGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH---------------- 48
            GG S E EVS+ +G      +    ++   + V R                        
Sbjct: 2   FGGKSVEHEVSIITGLQVIENMNKEKYEPIPVYVGRDGRWYTGKDLLDISNYKDIPSLLK 61

Query: 49  --------------------------------LKPDLAFNVLHGNFGEDGLVQAILELLE 76
                                           +  D+ F   HG  GEDG +Q + +L  
Sbjct: 62  KCEQVVLPPVPGLNKLYYYPFRKKFMSKEYDYIDVDVIFPAFHGTHGEDGTMQGLFQLAN 121

Query: 77  IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPP 127
           IPY  SG++ SA  MDK+  K +  +  +P+   +   R   +          +  +  P
Sbjct: 122 IPYVGSGVVGSATGMDKVIMKDIFKANNLPIVNYLWFLRKEYEKNKEAMLDLIESKLKYP 181

Query: 128 YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMG-DA 185
             +KP   GSS+GI   K    +   +  +  ++   ++++E+ V D +E+ C VMG D 
Sbjct: 182 MFVKPANLGSSIGISKAKNRDELFDAIEIAIYYDR--KIIVEEAVKDPMEVNCSVMGIDR 239

Query: 186 SLDVT--EIAVPKSDFYSYELKY------SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
            L+V+  E+ VP  +F SY+ KY         ++T  +PA IP +  KE+Q LA    Q 
Sbjct: 240 DLEVSLCEMPVPWEEFLSYQDKYMRKEKGGKGSTTRQIPAPIPEEKTKEIQELAKKVFQI 299

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           + C G++R DFL +  + KV+  EIN  PG    S    +    G SF +L+  ++E A
Sbjct: 300 LDCSGLARIDFLLEKETMKVYVNEINTIPG----SFAFYLWKPLGISFEKLIDRLIEYA 354


>gi|295698674|ref|YP_003603329.1| D-alanine--D-alanine ligase B [Candidatus Riesia pediculicola USDA]
 gi|291157176|gb|ADD79621.1| D-alanine--D-alanine ligase B [Candidatus Riesia pediculicola USDA]
          Length = 308

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 91/304 (29%), Positives = 152/304 (50%), Gaps = 15/304 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL-VLAHLKPDLAFNVLH 59
           +A+L GG SSER +SL SGK  A++L+D G +   ID      +  +A ++ D  F  LH
Sbjct: 8   VAILYGGNSSERTISLKSGKNIANSLKDLGIQSDLIDTKYQFSIDRIASVRYDKIFIALH 67

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G  GEDG +Q IL+  ++ YT +G  +S +   K+ +K++  S  +P  P   +N+ +  
Sbjct: 68  GKNGEDGTIQRILDKFKMNYTGNGFYSSFIGTHKILTKKIWFSLKLPTAPFFYINKKSFF 127

Query: 120 SQ---------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            Q           I  P +IKP   GSS+G+      +     L++  S+ +   ++IE+
Sbjct: 128 MQPRSAISSVFKKIGFPLIIKPDSEGSSIGVRKAFSLKEAERILVE--SFKYDRYIIIEK 185

Query: 171 YVDGIELTCGVMGD-ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           Y+ G E T  ++     L   +I +   + +SY  KY      ++ P          +++
Sbjct: 186 YIIGPEYTVSILNPYYILPSIKIDLYGDEIFSYGNKYDKF-VEYICPGGSSQSKEILIKK 244

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           +A  A++AIGC G+SR D   +      + LEIN  PGMT  S+    A  +G SF +L+
Sbjct: 245 IALAAYKAIGCFGLSRVDLKQN-YDGNFYLLEINTVPGMTDRSLVKIAAEQSGMSFSKLV 303

Query: 290 LWMV 293
             ++
Sbjct: 304 GKIL 307


>gi|302345910|ref|YP_003814263.1| D-ala D-ala ligase N-terminal domain protein [Prevotella
           melaninogenica ATCC 25845]
 gi|302149066|gb|ADK95328.1| D-ala D-ala ligase N-terminal domain protein [Prevotella
           melaninogenica ATCC 25845]
          Length = 332

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 86/326 (26%), Positives = 149/326 (45%), Gaps = 35/326 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40
           +A++ GG SSE +VS+ SG+   S  +   + +  +DV                    D 
Sbjct: 8   IAIVCGGDSSEHDVSMRSGQGLYSFFDKERYNIYIVDVKGIDWNVELPDGSLAPIDKNDF 67

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           S  +    ++ D A+  +HG  GE+G++Q   +L++IPY+  G+L  AL+ DK      +
Sbjct: 68  SFVMNGERVEFDYAYITIHGQPGENGVMQGYFDLIQIPYSTGGVLVEALTFDKYVLNNYL 127

Query: 101 SSCGVPVCPSILVNR----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
              G+ V  SIL+ R       + +  +  P  +KP   GSS G+  +K    +   L  
Sbjct: 128 RGFGIKVADSILLRRGEEYDEAEIEKRLGMPCFVKPAADGSSFGVSKVKNIDQLAPAL-- 185

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNST 212
             ++   D+++IE ++DG+E++ GV            TE+ V  ++F+ Y  KY+     
Sbjct: 186 RVAFMQSDEVMIEAFMDGMEISQGVYKTKDKAVVFPATEV-VTSNEFFDYNAKYN-GQVE 243

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK---VFWLEINVQPGMT 269
            + PA++  +  K V       +  +   GI R D++          +  LEIN  PGMT
Sbjct: 244 EITPARMSDETAKRVAAETSCIYDILHANGIIRIDYIISKDKDGKDVINMLEINTTPGMT 303

Query: 270 PVSIFPEMAAYAGYSFRELLLWMVED 295
             S  P+    AG   + +L  +VE+
Sbjct: 304 VTSFIPQQVRAAGLDIKNVLSDIVEN 329


>gi|91214527|ref|ZP_01251500.1| D-alanylalanine synthetase [Psychroflexus torquis ATCC 700755]
 gi|91186954|gb|EAS73324.1| D-alanylalanine synthetase [Psychroflexus torquis ATCC 700755]
          Length = 329

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 101/325 (31%), Positives = 162/325 (49%), Gaps = 35/325 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASAL-EDAGFKVSQ-----------------IDVDRSV 42
           +AV MGG S E E+SL SG+     L ++  ++V +                 I +D+S 
Sbjct: 5   IAVAMGGYSKEAEISLKSGEVVYKQLTKNENYRVYRAQILKNGWTIKTDIGEEIPIDKSN 64

Query: 43  GLVLAHLKP---DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
             V+ + +P   D  FN +HG  GEDGL Q  L+ LEIP T      +AL+ +K     V
Sbjct: 65  FSVVINGEPIHFDCVFNTIHGTPGEDGLFQGYLQTLEIPQTACDYYQAALTFNKRDCISV 124

Query: 100 VSSCGVPVCPSILVNRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
           + + G+    +I +N+    +       I  P  +K  + GSS GI  +K    I   L 
Sbjct: 125 LRANGIKTAKNIYINKGDDINPSAIVEYIGLPCFVKANRAGSSYGISKVKHKDDILTAL- 183

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNS 211
              S+   D+++IE ++DG E++ GV+       +L VTEI + +++F+ +E KY    S
Sbjct: 184 -EHSFKEDDEVIIESFLDGTEVSVGVINIKGNIIALPVTEI-ISENEFFDFEAKYL-GKS 240

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271
             + PA I     K+V+  A    + +  +G++RS+F+F   + +  +LE N  PG+T  
Sbjct: 241 KEITPATISDSQTKDVKDQAVRIFKLLKLKGLTRSEFIFH--NNEPHFLECNACPGLTEA 298

Query: 272 SIFPEMAAYAGYSFRELLLWMVEDA 296
           SI P+ A  AG S ++L    VE A
Sbjct: 299 SILPQQAKAAGISLQDLFTNAVEVA 323


>gi|284046364|ref|YP_003396704.1| D-alanine/D-alanine ligase [Conexibacter woesei DSM 14684]
 gi|283950585|gb|ADB53329.1| D-alanine/D-alanine ligase [Conexibacter woesei DSM 14684]
          Length = 309

 Score =  263 bits (672), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 104/304 (34%), Positives = 148/304 (48%), Gaps = 19/304 (6%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62
           V  GG S EREVS  SG+  A AL   G  V  IDV      V+   +PD  F  LHG  
Sbjct: 5   VAYGGRSLEREVSARSGQQAAKALRQLGHAVELIDVGADFVDVVQRAEPDFVFIALHGVG 64

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-- 120
           GEDG VQ +LE+L++PYT S  LASAL +DK   K V    GVP  P     +       
Sbjct: 65  GEDGTVQDLLEILQVPYTGSDALASALCLDKHTFKSVCELRGVPTPPWHSFTKQAFADYG 124

Query: 121 --------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                           V+KP + GSS G+ V+++   +   +L   + ++ D++L+E+YV
Sbjct: 125 AGKTLDALWQQFDGRAVVKPARQGSSFGLSVVQERAQLGGAVL--GAMSYDDRVLLERYV 182

Query: 173 DGIELTCGVMG----DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
            G EL   V+G       L V EI +   ++YS++  Y    S  V  A +P  +   V+
Sbjct: 183 PGRELAVTVLGRSDAPEPLPVVEIVMASEEYYSFQAHYEIGQSE-VRLAGLPDAVDAHVR 241

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
            +A  A+ A GCR  +R D        + + LEIN  PG+T     P  A +AG +F +L
Sbjct: 242 AIAAEAYSAAGCRDFARVDIRL--EGDEPWVLEINTIPGLTETGPTPLAAEHAGLTFAQL 299

Query: 289 LLWM 292
           +  +
Sbjct: 300 IERI 303


>gi|323497226|ref|ZP_08102246.1| D-alanyl-alanine synthetase A [Vibrio sinaloensis DSM 21326]
 gi|323317801|gb|EGA70792.1| D-alanyl-alanine synthetase A [Vibrio sinaloensis DSM 21326]
          Length = 330

 Score =  263 bits (672), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 96/331 (29%), Positives = 150/331 (45%), Gaps = 40/331 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDVDRS------------------ 41
           + ++ GG SSE EVSL S     S LE +  F V ++++                     
Sbjct: 6   ILLICGGGSSEHEVSLLSANFIQSQLELNPNFNVVRVEMKSDGWYTADGTLAYLDTNSGT 65

Query: 42  VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +    A +K D     +HG  GE G +Q++LEL  IPY   G  AS  S +K+ SK    
Sbjct: 66  LNTDNASIKLDFVVPCIHGYPGETGDIQSMLELSAIPYLGCGPEASTNSFNKITSKLWYD 125

Query: 102 SCGVPVCPSILVNRFTMDSQHLISPPY------VIKPLKGGSSLGIIVIKKDQSIPLDLL 155
           + G+P  P + ++     +       +       +K  + GSS+G   +     I   L 
Sbjct: 126 ALGIPNTPYVFLSSNDAQALDAAEKAFEKWGAIFVKAARQGSSVGCYKVTNVSDIQQALD 185

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYSS--L 209
              ++++ DQ+LIEQ V   EL       +  L V+   EI  P+  FY+YE KYSS   
Sbjct: 186 D--AFSYSDQVLIEQAVKPRELEVAAYEFEGKLYVSKPGEIKAPEDAFYTYEEKYSSSSH 243

Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
           ++T V    +     + ++  +      +  R +SR DF   P    ++  E+N  PGMT
Sbjct: 244 STTDVEATNLTEAQLETIRVSSEKVFTQMKLRHLSRIDFFLTP-EGDIYLNEVNTFPGMT 302

Query: 270 PVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           P+S+FP+M  + G+SF E L      A C+R
Sbjct: 303 PISMFPKMLEHNGHSFSEFL------ADCVR 327


>gi|325281885|ref|YP_004254427.1| D-alanine--D-alanine ligase [Odoribacter splanchnicus DSM 20712]
 gi|324313694|gb|ADY34247.1| D-alanine--D-alanine ligase [Odoribacter splanchnicus DSM 20712]
          Length = 326

 Score =  263 bits (672), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 87/321 (27%), Positives = 146/321 (45%), Gaps = 30/321 (9%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVS------------------QID-VDRS 41
           + V+ GG SSE EVS+ SG    S ++   +                      +D  D S
Sbjct: 5   VVVIAGGNSSEYEVSIKSGNHIFSEVDGEKYNKYLMILRGRDWMVEIGDQKFPVDKNDFS 64

Query: 42  VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
                  +  D A+  +HGN GE+G++Q  L+++ +PY+    L  A++ DK      ++
Sbjct: 65  FEYQGKKVVFDFAYITIHGNPGENGMLQGYLDMMGVPYSTCNTLVEAITFDKYTCTNYLN 124

Query: 102 SCGVPVC-PSILVNRFTMDSQHLI---SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
           + G+    P +LV     D + ++     P  IKP   GSS G+  +K       D    
Sbjct: 125 AFGINTTHPIMLVRGKAFDKEAVLKAVGLPCFIKPNAEGSSFGVSKVKTAADF--DAAVE 182

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI---AVPKSDFYSYELKYSSLNSTHV 214
            ++    ++L+E ++DGIE TCG+       V       VPK +F+ YE KY +  S  +
Sbjct: 183 GAFKMCREILVESFIDGIEFTCGLYKVGDKKVVMPVAEVVPKKEFFDYEAKYDAKMSDEI 242

Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274
           +P +   +I   +Q +A   +  + C GI R D        ++  LE+N  PGMT  S  
Sbjct: 243 IPGRFSAEITGRIQDMASEVYDILRCEGIVRIDGFVR--GEEIIMLEVNTTPGMTANSFV 300

Query: 275 PEMAAYAGYSFRELLLWMVED 295
           P+M    G   R+++  ++E+
Sbjct: 301 PKMVRVMGLPLRDVITGIIEE 321


>gi|169823960|ref|YP_001691571.1| D-alanine-D-alanine ligase [Finegoldia magna ATCC 29328]
 gi|190359129|sp|B0S093|DDL_FINM2 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|167830765|dbj|BAG07681.1| D-alanine-D-alanine ligase [Finegoldia magna ATCC 29328]
          Length = 350

 Score =  263 bits (672), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 75/336 (22%), Positives = 149/336 (44%), Gaps = 44/336 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH-----LKPD--- 52
           + VL GG S+E EVS++S +   + L    + V+ I V R+   ++       +K D   
Sbjct: 5   IYVLYGGPSTEHEVSITSARTLINNLSKEKYNVNAIFVRRNKKFIMKENITEEIKSDEEL 64

Query: 53  ------------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
                                   + F  +HG++GEDG +Q  +++L++P+    +L SA
Sbjct: 65  ILDTDLSVIESVSECIRKINPENTVIFPAIHGSYGEDGTIQGFIKVLDLPFVGCNVLGSA 124

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTM----DSQHLISPPYVIKPLKGGSSLGIIVI 144
           L MDK  +  +     +P    +++ +       +     S    +KP   GSS+G++  
Sbjct: 125 LCMDKGYTNDIFELNKIPQAKYVVLCKNDDYNLKEIFEKTSKAVYVKPCNAGSSVGVMRA 184

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV---PKSDFYS 201
           + ++ +   +    ++ +  ++L+E+ + G EL   VMG+ +   +   V      +F+ 
Sbjct: 185 ETEEELEKAIQN--AFQYDRRILVEEEIIGPELQIAVMGNDNPVASRPGVYQIHDVEFFD 242

Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
           Y+ KY+   +  + P  +   +  + + LA   ++ +   G SR D        +++  E
Sbjct: 243 YDAKYNDSKTEMLTPFPMDEKLELKARHLAEKVYKLMSLSGFSRVDMFV--KDNELWVNE 300

Query: 262 INVQPGMTPVSIFPEMAAYAG-YSFRELLLWMVEDA 296
           IN  PG+TP S+FP +       S  E+   ++  A
Sbjct: 301 INTVPGLTPHSMFPVLWKCTNDMSVSEVFDNLIGLA 336


>gi|146321214|ref|YP_001200925.1| D-alanine-D-alanine ligase and related ATP-grasp enzymes
           [Streptococcus suis 98HAH33]
 gi|145692020|gb|ABP92525.1| D-alanine-D-alanine ligase and related ATP-grasp enzymes
           [Streptococcus suis 98HAH33]
          Length = 283

 Score =  262 bits (671), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 79/252 (31%), Positives = 130/252 (51%), Gaps = 11/252 (4%)

Query: 53  LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
           + F VLHG  GEDG +Q  LE+L +PY  + IL+S+++MDK+ +K+V+ S G+   P + 
Sbjct: 23  VVFPVLHGPMGEDGSIQGFLEVLRMPYVGTNILSSSVAMDKITTKRVLESAGISQVPYVA 82

Query: 113 VNRFT------MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQL 166
           V           + +  ++ P  +KP   GSS+GI   +    +   L    ++ +  ++
Sbjct: 83  VIEGENIDDKIAEIEGKLTYPVFVKPANMGSSVGISKAEDLAGLRKALDL--AFKYDSRV 140

Query: 167 LIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           L+EQ V+  E+  G++G+A +  T     V    FY Y+ KY     T  +PAKI   I 
Sbjct: 141 LVEQGVNAREIEVGLLGNADVKTTLPGEVVKDVAFYDYDAKYIDNKITMEIPAKIDESIM 200

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
             ++  A  A +AIG  G+SR DF        +F  E+N  PG T  S++P +    G +
Sbjct: 201 DIMRDNAAKAFRAIGGCGLSRCDFFLTE-DGDIFLNELNTMPGFTQWSMYPLLWDNMGLA 259

Query: 285 FRELLLWMVEDA 296
           + +L+  +V  A
Sbjct: 260 YPDLIEELVRLA 271


>gi|153827363|ref|ZP_01980030.1| D-alanine--D-alanine ligase [Vibrio cholerae MZO-2]
 gi|297580376|ref|ZP_06942303.1| D-alanine-D-alanine ligase [Vibrio cholerae RC385]
 gi|149738732|gb|EDM53074.1| D-alanine--D-alanine ligase [Vibrio cholerae MZO-2]
 gi|297536022|gb|EFH74856.1| D-alanine-D-alanine ligase [Vibrio cholerae RC385]
          Length = 334

 Score =  262 bits (671), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 91/324 (28%), Positives = 148/324 (45%), Gaps = 34/324 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDVDR------------------S 41
           + +L GG SSE E+SL S       LE    F V ++++ +                  +
Sbjct: 6   ILLLCGGGSSEHEISLVSANYIQQQLELTPEFHVIRVEMKKEGWFSEQGALVYLDTNSAT 65

Query: 42  VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +    A    D     +HG  GE G +Q++LEL  IPY   G  ASA S +K+ SK    
Sbjct: 66  LNSDKASYPIDFVVPCIHGFPGETGDIQSMLELAGIPYLGCGPEASANSFNKITSKLWYD 125

Query: 102 SCGVPVCPSILVNRFTMDSQHLISPPY------VIKPLKGGSSLGIIVIKKDQSIPLDLL 155
           + G+P  P + + + T  S       +       +K  + GSS+G   +  +  I   + 
Sbjct: 126 ALGIPNTPYLFLTQNTPSSIEKAKQAFGHWGSIFVKAARQGSSVGCYKVTTEDQIAPAI- 184

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYSSLN- 210
             +++   +Q+L+EQ V   EL       +  L ++   E+  P+  FYSYE KYS+ + 
Sbjct: 185 -EAAFGFSEQVLVEQAVKPRELEVSAYEMNGKLYISKPGEVIAPEGTFYSYEEKYSANSH 243

Query: 211 STHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
           +  VL A+ +     + +Q  A      +  R +SR DF       +++  E+N  PGMT
Sbjct: 244 ARTVLEAENLTEKHKELIQTYAERVFIHMNLRHLSRIDFFLT-QEGQIYLNEVNTFPGMT 302

Query: 270 PVSIFPEMAAYAGYSFRELLLWMV 293
           P+S+FP+M  + G+ F E L   V
Sbjct: 303 PISMFPKMLEHNGHRFSEFLAQCV 326


>gi|303234404|ref|ZP_07321043.1| D-ala D-ala ligase N-terminal domain protein [Finegoldia magna
           BVS033A4]
 gi|302494520|gb|EFL54287.1| D-ala D-ala ligase N-terminal domain protein [Finegoldia magna
           BVS033A4]
          Length = 350

 Score =  262 bits (671), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 75/336 (22%), Positives = 149/336 (44%), Gaps = 44/336 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH-----LKPD--- 52
           + VL GG S+E EVS++S +   + L    + V+ I V R+   ++       +K D   
Sbjct: 5   IYVLYGGPSTEHEVSITSARTLINNLSKEKYNVNAIFVRRNKKFIMKENITEEIKSDEEL 64

Query: 53  ------------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
                                   + F  +HG++GEDG +Q  +++L++P+    +L SA
Sbjct: 65  ILDTDLSVIESVSECIRKINPENTVIFPAIHGSYGEDGTIQGFIKVLDLPFVGCNVLGSA 124

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTM----DSQHLISPPYVIKPLKGGSSLGIIVI 144
           L MDK  +  +     +P    +++ +       +     S    +KP   GSS+G++  
Sbjct: 125 LCMDKGYTNDIFELNKIPQAKYVVLCKNDEYNLKEIFEKTSKAVYVKPCNAGSSVGVMRA 184

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV---PKSDFYS 201
           + ++ +   +    ++ +  ++L+E+ + G EL   VMG+ +   +   V      +F+ 
Sbjct: 185 ETEEELEKAIQN--AFQYDRRILVEEEIIGPELQIAVMGNDNPVASRPGVYQIHDVEFFD 242

Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
           Y+ KY+   +  + P  +   +  + + LA   ++ +   G SR D        +++  E
Sbjct: 243 YDAKYNDSKTEMLTPFPMDEKLELKARHLAEKVYKLMSLSGFSRVDMFV--KDNELWVNE 300

Query: 262 INVQPGMTPVSIFPEMAAYAG-YSFRELLLWMVEDA 296
           IN  PG+TP S+FP +       S  E+   ++  A
Sbjct: 301 INTVPGLTPHSMFPVLWKCTNDMSVSEVFDNLIGLA 336


>gi|229523064|ref|ZP_04412476.1| D-alanine--D-alanine ligase [Vibrio cholerae TM 11079-80]
 gi|229339914|gb|EEO04924.1| D-alanine--D-alanine ligase [Vibrio cholerae TM 11079-80]
          Length = 334

 Score =  262 bits (671), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 90/324 (27%), Positives = 145/324 (44%), Gaps = 34/324 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDVDRSVGLVLAHL---------- 49
           + +L GG SSE E+SL S       LE    F V ++++ +                   
Sbjct: 6   ILLLCGGGSSEHEISLVSANYIQQQLELTPEFHVIRVEMKKEGWFSEQGALVYLDTNSAT 65

Query: 50  --------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
                     D     +HG  GE G +Q++LEL  IPY   G  ASA S +K+ SK    
Sbjct: 66  LNSDNTSYPIDFVVPCIHGFPGETGDIQSMLELAGIPYLGCGPEASANSFNKITSKLWYD 125

Query: 102 SCGVPVCPSILVNRFTMDSQHLISPPY------VIKPLKGGSSLGIIVIKKDQSIPLDLL 155
           + G+P  P + + + T  S       +       +K  + GSS+G   +  +  I   + 
Sbjct: 126 ALGIPNTPYLFLTQNTPSSIEKAKQAFGHWGSIFVKAARQGSSVGCYKVTTEDQIAPAI- 184

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYSSLN- 210
             +++   +Q+L+EQ V   EL       +  L ++   E+  P+  FYSYE KYS+ + 
Sbjct: 185 -EAAFGFSEQVLVEQAVKPRELEVSAYEMNGKLYISKPGEVIAPEGTFYSYEEKYSANSH 243

Query: 211 STHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
           +  VL A+ +     + +Q  A      +  R +SR DF       +++  E+N  PGMT
Sbjct: 244 ARTVLEAENLTEKQKELIQTYAERVFIHMNLRHLSRIDFFLT-QEGQIYLNEVNTFPGMT 302

Query: 270 PVSIFPEMAAYAGYSFRELLLWMV 293
           P+S+FP+M  + G+ F E L   V
Sbjct: 303 PISMFPKMLEHNGHRFSEFLAQCV 326


>gi|262274030|ref|ZP_06051842.1| D-alanine--D-alanine ligase [Grimontia hollisae CIP 101886]
 gi|262221840|gb|EEY73153.1| D-alanine--D-alanine ligase [Grimontia hollisae CIP 101886]
          Length = 332

 Score =  262 bits (671), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 90/329 (27%), Positives = 149/329 (45%), Gaps = 40/329 (12%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDA-GFKVSQIDVDRSVGLVLAH------------- 48
           +L GG S+E EVSL S     S L       V ++++ ++ G   +              
Sbjct: 8   LLCGGGSAEHEVSLVSANYLESELNKLPSVSVIRVEITKNDGWKDSKGQDCRLNLDKTLK 67

Query: 49  -----LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103
                +  D A   +HG  GE G +Q++ EL  +PY      AS +  +K+ SK    + 
Sbjct: 68  VGDEIINIDFAVPCIHGFPGETGDIQSLFELAGVPYMGCDSSASNVCFNKITSKLWFDAI 127

Query: 104 GVPVCPSILVNRFTMDSQHLIS------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
           G+P  P + +     DS               +K    GSS+G   + +  ++   +  +
Sbjct: 128 GIPNTPYVFLTDNNEDSVRSAEDAFDRWGAIFVKAACQGSSVGCYKVTEKSAVREAV--A 185

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYSSLNS-- 211
           S++ + +Q+L+E+ V   EL       +  + VT   EIA P+  FY+YE KYS+ +   
Sbjct: 186 SAFGYSNQVLVEKAVRPRELEIAAYHYNGEVVVTRPGEIACPEDTFYTYEEKYSAGSHSQ 245

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271
           T V P  +  +   +++  A  A   +  + +SR DF   P    V   EIN  PGMTP+
Sbjct: 246 TTVEPENLTEEQIAQMREYAEKAFVHLKLKDLSRIDFFLTP-EGDVLLNEINTFPGMTPI 304

Query: 272 SIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           S+FP++  + G++F E L       SC+R
Sbjct: 305 SMFPKLVEHNGHTFSEYLE------SCIR 327


>gi|256381067|ref|YP_003104727.1| D-alanine--D-alanine ligase [Actinosynnema mirum DSM 43827]
 gi|255925370|gb|ACU40881.1| D-alanine--D-alanine ligase [Actinosynnema mirum DSM 43827]
          Length = 314

 Score =  262 bits (670), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 102/310 (32%), Positives = 157/310 (50%), Gaps = 18/310 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG+S EREVSL SG+   +AL  AG  V + D D  +   L   +PD     LHG
Sbjct: 6   VAVLSGGLSHEREVSLRSGRRLTAALRSAGLVVEEWDADGQLLSRLKEHRPDAVVVALHG 65

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GE+G VQ ILEL  +P+  +   A   + DK  +K  +S  G+      ++   T   
Sbjct: 66  GEGENGSVQTILELAGVPFVGADSRACRRAWDKPTAKGELSRAGLATPEWAVLPHATFRE 125

Query: 121 ----------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                        +  P ++KP +GGS+LG  V++    +P  ++   +  +GD +L E+
Sbjct: 126 LGARPVLDSMIDRLGLPLMLKPAQGGSALGAQVVRDAADLPSAMVGCLA--YGDTVLAER 183

Query: 171 YVDGIELTC----GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE 226
           +V+G+E+      G  G  +L   EI VP+S  Y Y  +Y++  +    PA++     K 
Sbjct: 184 FVEGVEVAVAVVDGPDGPHALPPVEI-VPESGVYDYTSRYTAGLTDFHAPARLDEATAKA 242

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           V  LA  AH+ +G R +SR+D + +P    V +LE+NV PG+T  S  P     AG S  
Sbjct: 243 VGELAVSAHRLLGLRDVSRTDAIVEP-DGTVHFLEVNVSPGLTETSTLPMAVEAAGTSLG 301

Query: 287 ELLLWMVEDA 296
           E+   ++E A
Sbjct: 302 EIYAALIERA 311


>gi|261212348|ref|ZP_05926633.1| D-alanine--D-alanine ligase [Vibrio sp. RC341]
 gi|260838279|gb|EEX64935.1| D-alanine--D-alanine ligase [Vibrio sp. RC341]
          Length = 335

 Score =  262 bits (670), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 88/324 (27%), Positives = 146/324 (45%), Gaps = 34/324 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDVDRSVGLVLAHL---------- 49
           + +L GG SSE E+SL S       L+    F+V ++++ +                   
Sbjct: 6   ILLLCGGGSSEHEISLVSANYIQQQLQLTPEFEVIRVEMKKEGWFSEQGELVYLDTNSAT 65

Query: 50  --------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
                     D     +HG  GE G +Q++LEL  IPY   G  ASA S +K+ SK    
Sbjct: 66  LNGERFSSPIDFVVPCIHGFPGETGDIQSMLELAGIPYLGCGPEASANSFNKITSKLWYD 125

Query: 102 SCGVPVCPSILVNRFTMDSQHLISPPY------VIKPLKGGSSLGIIVIKKDQSIPLDLL 155
           +  +P  P + + + T DS       +       +K  + GSS+G   +  ++ I   + 
Sbjct: 126 ALDIPNTPYLFLTQNTSDSIKKAQQAFKEWGSIFVKAARQGSSVGCYKVTTEEQIAPAI- 184

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYSSLN- 210
             +++   +Q+L+E+ V   EL       +  L ++   EI  P+  FYSYE KYS+ + 
Sbjct: 185 -EAAFGFSEQVLVEKAVKPRELEVAAYEMNGQLHISKPGEIIAPEDAFYSYEEKYSASSH 243

Query: 211 STHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
           S  V+ A  +  +  + +Q+ A      +  R +SR DF        ++  E+N  PGMT
Sbjct: 244 SRTVIEADNLTNEQRELIQQCAERVFIHMKLRHLSRIDFFLT-QDDHIYLNEVNTFPGMT 302

Query: 270 PVSIFPEMAAYAGYSFRELLLWMV 293
           P+S+FP+M  + G+ F   L   V
Sbjct: 303 PISMFPKMLEHNGHRFSAFLAECV 326


>gi|255684796|gb|ACU27887.1| D-alanine:D-lactate ligase [Staphylococcus aureus]
          Length = 314

 Score =  262 bits (670), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 77/317 (24%), Positives = 135/317 (42%), Gaps = 45/317 (14%)

Query: 19  GKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------------------------- 51
               A+ +    ++   I + +S    +                                
Sbjct: 1   AIEIAANINKEKYEPLYIGITKSGVWKMCEKPCAEWENDNCYSAVLSPDKKMHGLLVKKN 60

Query: 52  --------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103
                   D+AF+ LHG  GEDG +Q + EL  IP+    I +SA+ MDK  +  V  + 
Sbjct: 61  HEYEINHVDVAFSALHGKSGEDGSIQGLFELSGIPFVGCDIQSSAICMDKSLTYIVAKNA 120

Query: 104 GVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
           G+      ++N+         + P  +KP + GSS G+  +     +  D    S+  + 
Sbjct: 121 GIATPAFWVINKDDRPVAATFTYPVFVKPARSGSSFGVKKVNSADEL--DYAIESARQYD 178

Query: 164 DQLLIEQYVDGIELTCGVMGD-ASLDVTEIAVPKSDFYSY------ELKYSSLNSTHVLP 216
            ++LIEQ V G E+ C V+G+ A+L V E+   +  +  +      E +  S N+   +P
Sbjct: 179 SKILIEQAVSGCEVGCAVLGNSAALVVGEVDQIRLQYGIFRIHQEVEPEKGSENAVITVP 238

Query: 217 AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPE 276
           A +  +    +Q  A   ++A+GCRG++R D      + ++   E+N  PG T  S +P 
Sbjct: 239 ADLSAEERGRIQETAKKIYKALGCRGLARVDMFL-QDNGRIVLNEVNTLPGFTSYSRYPR 297

Query: 277 MAAYAGYSFRELLLWMV 293
           M A AG +  EL+  ++
Sbjct: 298 MMAAAGIALPELIDRLI 314


>gi|291005733|ref|ZP_06563706.1| D-alanine--D-alanine ligase [Saccharopolyspora erythraea NRRL 2338]
          Length = 308

 Score =  261 bits (669), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 92/307 (29%), Positives = 158/307 (51%), Gaps = 18/307 (5%)

Query: 4   LMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFG 63
           L GG+S ER+VSL SG+  ++AL   G  V++ D D  +   +   +PD     LHG  G
Sbjct: 2   LAGGLSHERDVSLRSGRRLSAALRSVGMTVAEWDADSRLLSRIEQERPDAVVVALHGGEG 61

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ-- 121
           E+G VQ++L++  IPY  +   A   + DK  +K  ++  G+     +++   T      
Sbjct: 62  ENGAVQSVLDMYGIPYVGTDPRACRRAWDKPTAKAELARSGLTTPDWVVLPHATFRELGA 121

Query: 122 --------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
                     +  P ++KP +GGS+LG  V++    +P  ++ + S  +GD +L+E+Y++
Sbjct: 122 QSVLDALVAKLGLPLMLKPDQGGSALGARVVRDAADLPSAMVGALS--YGDTVLVEKYIE 179

Query: 174 GIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           G E+  GV+    G  +L   +I    +  Y Y  +Y++  +T+  PA++  +       
Sbjct: 180 GTEVAIGVLDGPDGPEALPAVQIE-ATNGVYDYTARYTAGLTTYRTPAELSPETAAAAGD 238

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           LA  AH+ +G R +SR+D + D     V +LE+NV PG+T  S+ P     AG S  ++ 
Sbjct: 239 LAVAAHRLLGLRDVSRTDAIID-RDGTVHFLEVNVSPGLTETSLLPMAIEAAGRSLGDVF 297

Query: 290 LWMVEDA 296
             +VE A
Sbjct: 298 ATLVERA 304


>gi|257065949|ref|YP_003152205.1| D-alanine/D-alanine ligase [Anaerococcus prevotii DSM 20548]
 gi|256797829|gb|ACV28484.1| D-alanine/D-alanine ligase [Anaerococcus prevotii DSM 20548]
          Length = 345

 Score =  261 bits (669), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 84/338 (24%), Positives = 147/338 (43%), Gaps = 46/338 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD-------- 52
           + +L GG SSE ++SL S    +  L +  +K+  + +++      A  K D        
Sbjct: 4   VYILCGGPSSEHDISLRSALNISKNLNEEKYKIKLVYINKEGAYSEAFDKIDTDNEFDLV 63

Query: 53  --------------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
                                     +    +HG +GEDG +QA+L+++ I Y  +G+L+
Sbjct: 64  KEVKENKTKSIADFLTCLSKEDYSKTIVIPAVHGTYGEDGTIQALLDVIGIAYIGNGLLS 123

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ------HLISPPYVIKPLKGGSSLG 140
           SA+ MDK+ S  +     +     +  N+   DS         I  P ++KP   GSS+G
Sbjct: 124 SAICMDKVTSNDIFEKNKLSQAKYLYTNKDGFDSDFADRCIEEIGLPLIVKPSANGSSVG 183

Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA--VPKSD 198
           +  +     +        +  +  ++L+E+ ++G E+   V+G  + DV+E A  +    
Sbjct: 184 VSKVTNKNELLAA--GDEALKYDKKVLVEELIEGQEIEFAVVGYMNPDVSEPAAYISDHT 241

Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
           F  Y+ KY S ++   LP  +  +  +E Q     A++A GC G +R D          +
Sbjct: 242 FLDYDAKYFSKSTKETLPYILEKEKLEEAQEFVKRAYEACGCEGFARVDIFL-GKDNNFY 300

Query: 259 WLEINVQPGMTPVSIFPEMAAYA-GYSFRELLLWMVED 295
             EIN  PG TP S F  +       SF E+L  +++D
Sbjct: 301 VNEINTFPGFTPSSFFARLCELMYNESFSEVLDRLIKD 338


>gi|227504431|ref|ZP_03934480.1| D-alanyl-alanine synthetase A [Corynebacterium striatum ATCC 6940]
 gi|227199079|gb|EEI79127.1| D-alanyl-alanine synthetase A [Corynebacterium striatum ATCC 6940]
          Length = 326

 Score =  261 bits (669), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 78/261 (29%), Positives = 136/261 (52%), Gaps = 15/261 (5%)

Query: 50  KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109
           + D+   VLHG +GEDG VQ + EL +IPY  +G+LAS+  MDK  +K+++++ G+PV P
Sbjct: 69  EVDVIIPVLHGPYGEDGTVQGLFELSDIPYVGAGVLASSAGMDKEFTKKLLTAEGLPVAP 128

Query: 110 SILV---NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQL 166
            +++      + D +  +  P  +KP +GGSS+G+  +         +    ++   +++
Sbjct: 129 EVILKGRTELSADEKAQLGLPVFVKPARGGSSIGVSKVTDWAEFSRAV--EVAFESDNKV 186

Query: 167 LIEQYVDGIELTCGVMGDASLDVT--------EIAVPKSDFYSYELKYSSLNSTHVLPAK 218
           L+E  + G E+  GV+  A   V          I   +  FY ++ KY     +  +PA 
Sbjct: 187 LVEPEIVGAEVEIGVLEYADGSVIASVPAQLNGIEEAEEGFYDFDAKYIDEGVSAQIPAP 246

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278
           +  D+ + ++  A  A +A+GC G+SR DF         +  EIN  PG TP+S++P++ 
Sbjct: 247 LDPDLIQTLRETAVSAFRALGCEGLSRVDFFVTK--DAFYINEINTFPGFTPISMYPQVL 304

Query: 279 AYAGYSFRELLLWMVEDASCL 299
           A  G  +  LL  ++E A   
Sbjct: 305 AATGVDYAALLDALIEGAMAR 325


>gi|86147981|ref|ZP_01066284.1| D-alanylalanine synthetase [Vibrio sp. MED222]
 gi|85834205|gb|EAQ52360.1| D-alanylalanine synthetase [Vibrio sp. MED222]
          Length = 331

 Score =  261 bits (669), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 86/327 (26%), Positives = 146/327 (44%), Gaps = 34/327 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALED-AGFKVSQIDV------------------DRS 41
           + +L GG SSE EVS+ S       L   A F V ++++                  D++
Sbjct: 6   ILLLCGGGSSEHEVSIVSANYLFEQLNSVADFNVVRVEIKNEGWCLDSGELVYLDINDQT 65

Query: 42  VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +       K D     +HG  GE G +Q++ E+ +IPY   G  AS  S +K+ SK    
Sbjct: 66  LRGDNLESKVDFIVPCIHGFPGETGDIQSLFEMAKIPYLGCGSEASNNSFNKITSKLWYD 125

Query: 102 SCGVPVCPSILVNRFTMDSQHLIS------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
           + G+P  P + ++  T  +    +          +K  + GSS+G   + + + +   + 
Sbjct: 126 ALGIPNTPYLFLSDNTEQAHAQATQAFESWGKVFVKAARQGSSVGCYQVNQAEELSEAI- 184

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYSSL-- 209
            + ++   DQ+LIE+ V   EL       D  L ++   E+  P   FYSYE KYS+   
Sbjct: 185 -NKAFTFSDQVLIEKSVVPRELEVAAYEIDGELQISKPGEVIAPNGAFYSYEEKYSADSH 243

Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
           + T V    +  +  + +   A      +  R +SR DF       +++  E+N  PGMT
Sbjct: 244 SITEVEATNLTDEQRELIADSARKVFTQMKLRHLSRIDFFLT-QDNEIYLNEVNTFPGMT 302

Query: 270 PVSIFPEMAAYAGYSFRELLLWMVEDA 296
           P+S+FP+M  + G+ F + L   V  +
Sbjct: 303 PISMFPKMVEHDGHKFSQFLENCVRTS 329


>gi|163800670|ref|ZP_02194571.1| D-alanylalanine synthetase [Vibrio sp. AND4]
 gi|159176113|gb|EDP60907.1| D-alanylalanine synthetase [Vibrio sp. AND4]
          Length = 329

 Score =  261 bits (668), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 78/326 (23%), Positives = 145/326 (44%), Gaps = 34/326 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALED-AGFKVSQIDVD------------------RS 41
           + +L GG S+E E+SL S       L       V+++++                   + 
Sbjct: 5   ILLLCGGGSAEHEISLLSANFVEQQLNLLENVSVTRVEIKSEGWITNQGELVYLDLNTKK 64

Query: 42  VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +     +L+ D     +HG  GE G +Q++ E+  IPY   G  AS+ S +K+ SK    
Sbjct: 65  LCSDKLNLEIDFIVPCIHGFPGETGDIQSMFEIAGIPYLGCGPEASSNSFNKITSKLWYD 124

Query: 102 SCGVPVCPSILVNRFTMDSQHLIS------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
           + G+P  P + + R    +               +K  + GSS+G   + + Q++   + 
Sbjct: 125 AIGIPNTPYLFLTRNDEHAHQQALQAFDKWGKVFVKAARQGSSVGCYSVTERQALSQAV- 183

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMG-DASL---DVTEIAVPKSDFYSYELKYSSLNS 211
            + ++ + +Q+L+E+ V   EL       +  L      E+  P   FYSY+ KYS+ + 
Sbjct: 184 -NDAFGYSEQVLVEKSVRPRELEVAAYEMNGQLHITPPGEVIAPDGAFYSYDEKYSNSSH 242

Query: 212 --THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
             T V    +  +  + +++ +    + +  R +SR DF       +++  E+N  PGMT
Sbjct: 243 SLTEVEAKNLTEEQVEVIRQASETVFRQMNLRHLSRIDFFLTE-DGEIYLNEVNTFPGMT 301

Query: 270 PVSIFPEMAAYAGYSFRELLLWMVED 295
           P+S+FP+M    G+ F + L   +E 
Sbjct: 302 PISMFPKMLQNNGHKFHQFLADCIET 327


>gi|313886885|ref|ZP_07820589.1| D-ala D-ala ligase N-terminal domain protein [Porphyromonas
           asaccharolytica PR426713P-I]
 gi|312923682|gb|EFR34487.1| D-ala D-ala ligase N-terminal domain protein [Porphyromonas
           asaccharolytica PR426713P-I]
          Length = 329

 Score =  261 bits (668), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 84/326 (25%), Positives = 143/326 (43%), Gaps = 36/326 (11%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           +A++ GG S E EVS  S +     ++   F    + + R    V               
Sbjct: 6   IAIICGGYSGEAEVSQRSAQTILKQIDQTLFTPYLVTITRDAWSVTDAEGKAGTIDHALV 65

Query: 47  -----AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
                A +   LA+  +HG  GE+GL+Q  L++L IPYT  G+L  AL+ +K      ++
Sbjct: 66  SRFGTAEVTFALAYITIHGTPGENGLLQGYLDMLGIPYTTGGVLCEALTFNKEACNAYLA 125

Query: 102 SCGVPVCPSILVNRFTMDS--------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153
             G+ +  S  +   T +         Q  +  P  +KP  GGSS+    I + + +   
Sbjct: 126 HHGLRIARSHCLRNHTREFSSEEQELIQSRLRLPLFVKPNTGGSSIATTRIDQWEQLSTA 185

Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSL 209
           +  + ++     +LIE+ + G E+TCG +       +L VTE+ V    F+ Y+ KY   
Sbjct: 186 V--ADAYTAAPDVLIEECIVGTEVTCGCVILPDDSFALPVTEV-VAHDTFFDYDAKY-YG 241

Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
            S  + PA+I  ++ + VQ  +      + C G  R D++          LE+N  PGMT
Sbjct: 242 KSDEITPARISPELTQRVQETSLTIAHLLDCYGFVRIDYII-EADGIPTLLEVNTTPGMT 300

Query: 270 PVSIFPEMAAYAGYSFRELLLWMVED 295
             S  P+    AG    +L+  +++ 
Sbjct: 301 EASFIPQQVRAAGLQLSDLITRIIKS 326


>gi|262403615|ref|ZP_06080173.1| D-alanine--D-alanine ligase [Vibrio sp. RC586]
 gi|262350119|gb|EEY99254.1| D-alanine--D-alanine ligase [Vibrio sp. RC586]
          Length = 334

 Score =  261 bits (668), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 88/324 (27%), Positives = 147/324 (45%), Gaps = 34/324 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDVDRSVGLVLA------------ 47
           + +L GG SSE E+SL S       L     F V ++++ +                   
Sbjct: 6   ILLLCGGGSSEHEISLVSANYIQQQLALTPQFNVIRVEMKKDGWFSEQGELVYLDTNSAT 65

Query: 48  ------HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
                     D     +HG  GE G +Q++LEL  IPY   G  ASA S +K+ SK    
Sbjct: 66  LNGDKISQPIDFVVPCIHGFPGETGDIQSMLELAGIPYLGCGPEASANSFNKITSKLWYD 125

Query: 102 SCGVPVCPSILVNRFTMDSQHLISPPY------VIKPLKGGSSLGIIVIKKDQSIPLDLL 155
           +  +P  P + + + T DS       +       +K  + GSS+G   + +++ I   + 
Sbjct: 126 ALDIPNTPYLFLTQNTTDSIEKAQQAFRNWGSIFVKAARQGSSVGCYKVTREEQIAPAI- 184

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYSSLN- 210
             +++   +Q+L+E+ V   EL       +  L ++   E+  P+  FYSYE KYS+ + 
Sbjct: 185 -EAAFGFSEQVLVEKAVKPRELEVAAYEMNGQLHISKPGEVIAPEDAFYSYEEKYSASSH 243

Query: 211 STHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
           S  V+ A+ +    +  +Q+ A      +  R +SR DF       +++  E+N  PGMT
Sbjct: 244 SRTVIEAEHLTEAQHNLIQQCAARVFIHMKLRHLSRIDFFLT-QDGQIYLNEVNTFPGMT 302

Query: 270 PVSIFPEMAAYAGYSFRELLLWMV 293
           P+S+FP+M  + G+ F E L   V
Sbjct: 303 PISMFPKMLEHNGHQFSEFLALCV 326


>gi|254432107|ref|ZP_05045810.1| D-alanine--D-alanine ligase [Cyanobium sp. PCC 7001]
 gi|197626560|gb|EDY39119.1| D-alanine--D-alanine ligase [Cyanobium sp. PCC 7001]
          Length = 365

 Score =  261 bits (668), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 90/351 (25%), Positives = 149/351 (42%), Gaps = 58/351 (16%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDA----GFKVSQIDVD---RSVGLVLAHLKPD-- 52
            ++ GG S E  +S+ S    A+AL        + VS   +D   R  G  LA    D  
Sbjct: 2   GLVFGGASGEHAISIRSAATVAAALRRGENGRRYAVSCFYIDPQGRWWGPELAEQVLDQG 61

Query: 53  ----------------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84
                                       + F VLHG  GEDG +Q +  L+++P+  SG+
Sbjct: 62  TPASPEQLASAPARPGFQGFPTGALAMEVWFPVLHGPNGEDGTIQGLFTLMQVPFVGSGV 121

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKG 135
           L SA+ MDK   K  +++  +P  P   V    +++         +  +  P  +KP   
Sbjct: 122 LGSAVGMDKQAMKAALAAAELPQVPYACVEAGELEADPAAVLERLERQLGYPCFVKPANL 181

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195
           GSS+GI        +   L  +++     +L++EQ V   EL C V G     +    + 
Sbjct: 182 GSSVGISKATDRDGLLAGLRSAAAL--DPRLVVEQGVTARELECAVRGGGPRPLEASVLG 239

Query: 196 K----SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF- 250
           +    +D+Y Y  KYS   S  V+PA +P  I  + + +A  A +A+   G++R DF + 
Sbjct: 240 EIRYDADWYDYATKYSEGRSHTVIPADVPEGIAAQARGMALEACRALNASGLARVDFFYT 299

Query: 251 -----DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                D    +++  EIN  PG T  S++P +   +G     L+  ++  A
Sbjct: 300 APAPGDGGEGRLWLNEINTLPGFTSQSMYPMLWEASGVPLDTLVDGLITAA 350


>gi|306820571|ref|ZP_07454202.1| D-alanine-D-alanine ligase [Eubacterium yurii subsp. margaretiae
           ATCC 43715]
 gi|304551388|gb|EFM39348.1| D-alanine-D-alanine ligase [Eubacterium yurii subsp. margaretiae
           ATCC 43715]
          Length = 401

 Score =  261 bits (667), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 83/369 (22%), Positives = 150/369 (40%), Gaps = 79/369 (21%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50
           + +  GG S+E EVS+ S    A   + + + +  I + +     ++             
Sbjct: 5   IGLFFGGNSTEHEVSIVSALQAAEFFDKSKYDIVPIYITKDNRFFVSEFTGKIEEYKNIK 64

Query: 51  -----------------------------------PDLAFNVLHGNFGEDGLVQAILELL 75
                                               D+AF ++HG   EDG +Q +L +L
Sbjct: 65  SLLEKSNQILLVKNGKKVDLVKYPFKVFGNKVYDYIDIAFPIVHGTNVEDGTLQGMLNML 124

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF---------TMDSQHLISP 126
            IPY    + +SA+ MDK   K ++    +PV   ++VN+F           + +   + 
Sbjct: 125 GIPYVGCDVYSSAVGMDKYAMKCILKENNIPVLDCLVVNKFKYLENSDEVEENIKSKFNY 184

Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI-ELTCGVMGD- 184
           P ++KP   GSS+GI + + D S+   L  +  +++  +L++E  +  I E+ C V+GD 
Sbjct: 185 PVIVKPFNLGSSVGIKIARDDSSLKDALDYAFGFSY--KLIVEPAITSIKEVNCSVLGDM 242

Query: 185 ASLDVTEIAVP--KSDFYSYELKYSSLNSTHVL---------------PAKIPLDIYKEV 227
            S   +E   P    +  SY+ KY S +                    PA I     + +
Sbjct: 243 ESASASECEQPIGSGEILSYQDKYESSSGKKTGTSNAKGTMESLSRKLPADIDETTRETI 302

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287
           +++A    + +GC G++R DF+ D    K++  EIN  PG     +        G  +  
Sbjct: 303 RKMAVDTFKTLGCSGVARIDFIIDEEENKIYVNEINTIPGSLSFYL----WKAVGMDYPN 358

Query: 288 LLLWMVEDA 296
           LL  +++ A
Sbjct: 359 LLEKLIQLA 367


>gi|332299969|ref|YP_004441890.1| D-alanine--D-alanine ligase [Porphyromonas asaccharolytica DSM
           20707]
 gi|332177032|gb|AEE12722.1| D-alanine--D-alanine ligase [Porphyromonas asaccharolytica DSM
           20707]
          Length = 329

 Score =  261 bits (667), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 84/326 (25%), Positives = 142/326 (43%), Gaps = 36/326 (11%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           +A++ GG S E EVS  S +     ++   F    + + R    V               
Sbjct: 6   IAIICGGYSGEAEVSQRSAQTILKQIDQTLFTPYLVTITRDAWSVTDAEGKAGTIDHALV 65

Query: 47  -----AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
                A +   LA+  +HG  GE+GL+Q  L++L IPYT  G+L  AL+ +K      ++
Sbjct: 66  ARFGTAEVTFALAYITIHGTPGENGLLQGYLDMLGIPYTTGGVLCEALTFNKEACNAYLA 125

Query: 102 SCGVPVCPSILVNRFTMDS--------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153
             G+ +  S  +   T +         Q  +  P  +KP  GGSS+    I + + +   
Sbjct: 126 HHGLRIARSHCLRNHTREFSSEEQELIQSRLRLPLFVKPNTGGSSIATTRIDQWEQLSTA 185

Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSL 209
           +  + ++     +LIE+ + G E+TCG +       +L VTE+ V    F+ Y+ KY   
Sbjct: 186 V--ADAYTAAPDVLIEECIVGTEVTCGCVVLPDDSFALPVTEV-VAHDTFFDYDAKY-YG 241

Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
            S  + PA+I  +  + VQ  +      + C G  R D++          LE+N  PGMT
Sbjct: 242 KSDEITPARISPEQTQRVQETSLTIAHLLDCYGFVRIDYII-EADGIPTLLEVNTTPGMT 300

Query: 270 PVSIFPEMAAYAGYSFRELLLWMVED 295
             S  P+    AG    +L+  +++ 
Sbjct: 301 EASFIPQQVRAAGLQLSDLITRIIKS 326


>gi|153214583|ref|ZP_01949470.1| D-alanine--D-alanine ligase [Vibrio cholerae 1587]
 gi|153828727|ref|ZP_01981394.1| D-alanine--D-alanine ligase [Vibrio cholerae 623-39]
 gi|124115281|gb|EAY34101.1| D-alanine--D-alanine ligase [Vibrio cholerae 1587]
 gi|148875774|gb|EDL73909.1| D-alanine--D-alanine ligase [Vibrio cholerae 623-39]
          Length = 334

 Score =  261 bits (667), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 90/324 (27%), Positives = 145/324 (44%), Gaps = 34/324 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDVDRSVGLVLAHL---------- 49
           + +L GG SSE E+SL S       LE    F V ++++ +                   
Sbjct: 6   ILLLCGGGSSEHEISLVSANYIQQQLELTPEFHVIRVEMKKEGWFSEQGALVYLDTNSAT 65

Query: 50  --------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
                     D     +HG  GE G +Q++LEL  IPY   G  ASA S +K+ SK    
Sbjct: 66  LNSDNTSYPIDFVVPCIHGFPGETGDIQSMLELAGIPYLGCGPEASANSFNKITSKLWYD 125

Query: 102 SCGVPVCPSILVNRFTMDSQHLISPPY------VIKPLKGGSSLGIIVIKKDQSIPLDLL 155
           + G+P  P + + + T  S       +       +K  + GSS+G   +  +  I   + 
Sbjct: 126 ALGIPNTPYLFLTQNTPSSIEKAKQAFGHWGSIFVKAARQGSSVGCYKVTTEDQIAPAI- 184

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYSSLN- 210
             +++   +Q+L+EQ V   EL       +  L ++   E+  P+  FYSYE KYS+ + 
Sbjct: 185 -EAAFGFSEQVLVEQAVKPRELEVSAYEMNGKLYISKPGEVIAPEGTFYSYEEKYSANSH 243

Query: 211 STHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
           +  VL A+ +     + +Q  A      +  R +SR DF       +++  E+N  PGMT
Sbjct: 244 ARTVLEAENLTEKHKELIQTYAERVFIHMKLRHLSRIDFFLT-QEGQIYLNEVNTFPGMT 302

Query: 270 PVSIFPEMAAYAGYSFRELLLWMV 293
           P+S+FP+M  + G+ F E L   V
Sbjct: 303 PISMFPKMLEHNGHRFSEFLAQCV 326


>gi|21910620|ref|NP_664888.1| D-alanyl-alanine synthetase A [Streptococcus pyogenes MGAS315]
 gi|21904822|gb|AAM79691.1| putative D-ala,D-ala ligase [Streptococcus pyogenes MGAS315]
          Length = 321

 Score =  261 bits (667), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 74/271 (27%), Positives = 138/271 (50%), Gaps = 11/271 (4%)

Query: 34  SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDK 93
             I++ + +     + +  + F VLHG  GEDG +Q  LE+L +PY  + +++S+++MDK
Sbjct: 42  ETIELTQKIKPSDIYEEGAVVFPVLHGPMGEDGSIQGFLEVLRMPYIGTNVMSSSIAMDK 101

Query: 94  MRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147
           + +K+V+ S G+P     +      +    +++   ++ P  +KP   GSS+GI   +  
Sbjct: 102 ITTKRVLESIGIPQVAYTVYIDGQDLEACLVETLARLTFPIFVKPANMGSSVGISKAQTK 161

Query: 148 QSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYELK 205
             +   +  +    +  ++LIEQ V   E+  G++G+  +  T     +   DFY Y+ K
Sbjct: 162 VELRKAIQLAL--TYDSRVLIEQGVVAREIEVGLLGNDKVKSTLPGEVIKDVDFYDYQAK 219

Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           Y     T  +PA +   I  E++  A +A +A+G  G+SR DF       +V+  E+N  
Sbjct: 220 YVDNKITMAIPADVDQSIVTEMRSYAEVAFKALGGCGLSRCDFFLT-QDGQVYLNELNTM 278

Query: 266 PGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           PG T  S++P +    G ++ +L+  +V  A
Sbjct: 279 PGFTQWSMYPLLWENMGLAYPDLIEELVTLA 309


>gi|261414467|ref|YP_003248150.1| D-alanine/D-alanine ligase [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261370923|gb|ACX73668.1| D-alanine/D-alanine ligase [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|302327372|gb|ADL26573.1| D-alanyl D-alanine ligase [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 344

 Score =  261 bits (667), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 99/336 (29%), Positives = 164/336 (48%), Gaps = 46/336 (13%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL------------------ 44
           VLMGG S+E +VS+ SG     A++   + +  + +D+                      
Sbjct: 8   VLMGGPSTEHDVSVVSGTGVVRAMDPEKYNIHPVLIDKDGTWHWSSRELSPYQKANFSEN 67

Query: 45  ----------------VLAHLK-PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87
                            L+ L   D+AF  LHG +GEDG +QA+LE   IPYT  G+LAS
Sbjct: 68  YFHSLEGTAANKKKSPALSELPSADIAFLALHGKWGEDGHIQAMLENWNIPYTGCGLLAS 127

Query: 88  ALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD------SQHLISPPYVIKPLKGGSSLGI 141
           AL+MDK++SK++  + G+P  P  ++ +              +  P VIK   GGSS+GI
Sbjct: 128 ALAMDKIKSKEIYRANGIPTPPYRVIWKHDFTGDTLVSVADELGYPLVIKDPLGGSSIGI 187

Query: 142 IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM-GDASLDVTEIAVPKSDFY 200
            + K         +    +   ++LL E+++ G E +CG + G+  L  TE+ +   +++
Sbjct: 188 GIAKNLDEAGK--IAQDLFKDSNRLLCEKFIAGGEASCGYIEGEKPLPPTEMRMTTREYF 245

Query: 201 SYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260
            +E KY+      V PA+   ++   +Q L   AH A+G  G SR+D        ++F +
Sbjct: 246 DFEAKYN-GECQEVTPAEFAPELTARIQELVKNAHYALGGAGYSRTDVRITK-DGELFAI 303

Query: 261 EINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           E N  PGMTP S+ P+ AA  G ++ +L+  +++ +
Sbjct: 304 ETNTLPGMTPTSLLPQQAACVGITYSQLIDLIIDKS 339


>gi|28900741|ref|NP_800396.1| D-alanyl-alanine synthetase A [Vibrio parahaemolyticus RIMD
           2210633]
 gi|153838099|ref|ZP_01990766.1| D-alanine--D-alanine ligase [Vibrio parahaemolyticus AQ3810]
 gi|260365385|ref|ZP_05777927.1| D-alanine--D-alanine ligase [Vibrio parahaemolyticus K5030]
 gi|260877677|ref|ZP_05890032.1| D-alanine--D-alanine ligase [Vibrio parahaemolyticus AN-5034]
 gi|260896057|ref|ZP_05904553.1| D-alanine--D-alanine ligase [Vibrio parahaemolyticus Peru-466]
 gi|260902128|ref|ZP_05910523.1| D-alanine--D-alanine ligase [Vibrio parahaemolyticus AQ4037]
 gi|32699435|sp|Q87HS0|DDL_VIBPA RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|28809187|dbj|BAC62229.1| D-alanine-D-alanine ligase [Vibrio parahaemolyticus RIMD 2210633]
 gi|149748485|gb|EDM59344.1| D-alanine--D-alanine ligase [Vibrio parahaemolyticus AQ3810]
 gi|308088124|gb|EFO37819.1| D-alanine--D-alanine ligase [Vibrio parahaemolyticus Peru-466]
 gi|308090884|gb|EFO40579.1| D-alanine--D-alanine ligase [Vibrio parahaemolyticus AN-5034]
 gi|308109929|gb|EFO47469.1| D-alanine--D-alanine ligase [Vibrio parahaemolyticus AQ4037]
 gi|308112832|gb|EFO50372.1| D-alanine--D-alanine ligase [Vibrio parahaemolyticus K5030]
          Length = 329

 Score =  261 bits (667), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 83/327 (25%), Positives = 145/327 (44%), Gaps = 34/327 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDVD------------------RS 41
           + +L GG SSE E+SL S       L      KV+++++                   + 
Sbjct: 5   ILLLCGGGSSEHEISLLSANFVEQQLNLIQNVKVTRVEIKNEGWVTDQGELVYLDLNTKQ 64

Query: 42  VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +    ++   D     +HG  GE G +Q++ E+  IPY   G  AS+ S +K+ SK    
Sbjct: 65  LCSNESNQTIDFIVPCIHGFPGETGDIQSLFEIAGIPYLGCGPEASSNSFNKITSKLWYD 124

Query: 102 SCGVPVCPSILVNRFTMDSQHLIS------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
           +  +P  P + + R    +               +K  + GSS+G   + + Q+I   + 
Sbjct: 125 ALDIPNTPYLFLTRNDEHAHRQAEQAFEKWGKVFVKAARQGSSVGCYSVAEKQAIAKAV- 183

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYSSLNS 211
            + ++ + DQ+L+E+ V   EL       +  L +T   E+  P   FYSY+ KYSS + 
Sbjct: 184 -NDAFGYSDQVLVEKAVKPRELEVAAYEMNGELHITKPGEVIAPDGAFYSYDEKYSSSSH 242

Query: 212 --THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
             T V    +  +   +++  +    + +  R +SR DF       +++  E+N  PGMT
Sbjct: 243 SLTEVEAKNLTQEQIDKIRHASETVFKQMNLRHLSRIDFFLTE-DNEIYLNEVNTFPGMT 301

Query: 270 PVSIFPEMAAYAGYSFRELLLWMVEDA 296
           P+S+FP+M    G+ F E L   +  A
Sbjct: 302 PISMFPKMLQNNGHKFHEFLEDCINSA 328


>gi|148978385|ref|ZP_01814879.1| D-alanylalanine synthetase [Vibrionales bacterium SWAT-3]
 gi|145962411|gb|EDK27690.1| D-alanylalanine synthetase [Vibrionales bacterium SWAT-3]
          Length = 331

 Score =  260 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 84/327 (25%), Positives = 146/327 (44%), Gaps = 34/327 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALED-AGFKVSQIDVDRSVGLVLA------------ 47
           + +L GG SSE EVSL S       L+    F V ++++      + +            
Sbjct: 6   ILLLCGGGSSEHEVSLVSANYLFDQLKSVEDFNVVRVEIKSEGWCLDSGELVYLDINNQT 65

Query: 48  ------HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
                   K D     +HG  GE G +Q++ E+ +IPY   G  AS  S +K+ SK    
Sbjct: 66  LRGDDLESKVDFIVPCIHGFPGETGDIQSLFEMAKIPYLGCGSEASNNSFNKITSKLWYD 125

Query: 102 SCGVPVCPSILVNRFTMDSQHLIS------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
           + G+P  P + ++  T ++    +          +K  + GSS+G   +   + +   + 
Sbjct: 126 ALGIPNTPYLFLSDNTDEAHAQATQAFEKWGKVFVKAARQGSSVGCYQVNHIEDLSDAI- 184

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYSSL-- 209
            + ++ + DQ+L+E+ V   EL       D  L ++   E+  P   FYSYE KYS+   
Sbjct: 185 -NKAFTYSDQVLVEKSVVPRELEVAAYEIDGELHISKPGEVIAPNGAFYSYEEKYSADSH 243

Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
           + T V  + +  +  + +   A      +  R +SR DF       +++  E+N  PGMT
Sbjct: 244 SITEVEASNLTDEQRQLIAESARKVFTQMKLRHLSRIDFFLT-QDNEIYLNEVNTFPGMT 302

Query: 270 PVSIFPEMAAYAGYSFRELLLWMVEDA 296
           P+S+FP+M  + G+ F + L   V  +
Sbjct: 303 PISMFPKMVEHDGHKFAQFLENCVRTS 329


>gi|323492914|ref|ZP_08098055.1| D-alanyl-alanine synthetase A [Vibrio brasiliensis LMG 20546]
 gi|323312849|gb|EGA65972.1| D-alanyl-alanine synthetase A [Vibrio brasiliensis LMG 20546]
          Length = 330

 Score =  260 bits (666), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 93/331 (28%), Positives = 146/331 (44%), Gaps = 40/331 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDVDRS------------------ 41
           + +L GG SSE EVSL S     S LE  + F V ++++                     
Sbjct: 6   ILLLCGGGSSEHEVSLVSANFLQSQLELTSDFNVIRVEMKTDGWYTDKGELAYLDTNSGT 65

Query: 42  VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +      +K D     +HG  GE G +Q++LEL  IPY   G  AS  S +K+ SK    
Sbjct: 66  LNTDKESVKLDFIVPCIHGFPGETGDIQSMLELAGIPYLGCGPEASTNSFNKITSKLWYD 125

Query: 102 SCGVPVCPSILVNRFTMDSQHLISPP------YVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
           + G+P  P I ++     +               +K  + GSS+G   +   + +   L 
Sbjct: 126 ALGIPNTPYIFLSENDQHAYQASKEAFEKWGSVFVKAARQGSSVGCYKVTDIEQLQQAL- 184

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYS--SL 209
            + ++ + DQ+L+EQ V   EL          L ++   E+  P+  FYSYE KYS  S 
Sbjct: 185 -NDAFGYSDQVLVEQAVKPRELEVAAYQYQGELHISKPGEVIAPEDAFYSYEEKYSASSH 243

Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
           + T V  + +     + ++  +      +  R +SR DF   P    ++  E+N  PGMT
Sbjct: 244 SKTEVEASNLTEQQLEIIRTSSEKVFTQMRLRHLSRIDFFLTPEGN-IYLNEVNTFPGMT 302

Query: 270 PVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           P+S+FP+M    G+ F E L      A C+R
Sbjct: 303 PISMFPKMLENNGHKFSEFL------ADCVR 327


>gi|225022645|ref|ZP_03711837.1| hypothetical protein CORMATOL_02688 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224944553|gb|EEG25762.1| hypothetical protein CORMATOL_02688 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 325

 Score =  260 bits (666), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 78/263 (29%), Positives = 138/263 (52%), Gaps = 15/263 (5%)

Query: 47  AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP 106
            H+  D+ F VLHG +GEDG +Q + EL  +PY  +G+L+SA  MDK  +K+++++ G+P
Sbjct: 67  EHVTVDVIFPVLHGLYGEDGTIQGLFELSGVPYVGTGVLSSACGMDKEYTKKLLAAEGLP 126

Query: 107 VCPSILVNRFTMDSQ---HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
           V   +++      +Q    L+  P  +KP +GGSS+GI  + + + +   L +  +  + 
Sbjct: 127 VGKEVILRGEETLTQADCQLLGLPVYVKPARGGSSIGISRVTRWEDMDAALCE--ARQYD 184

Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIA--------VPKSDFYSYELKYSSLNSTHVL 215
            ++++E  + G E+ CGV+      V            V    FY ++ KY   + + ++
Sbjct: 185 TKVIVESEIIGDEVECGVLEYPDGMVVASVPAQLVNTSVGHEGFYGFDAKYVDGDVSAMI 244

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275
           PA +     + +Q LA  A QA+ C G++R DF            E+N  PG TP+S++P
Sbjct: 245 PAPLDDAATRLIQSLAREAFQALQCSGLARVDFFVTQAG--PVLNEVNTMPGFTPISMYP 302

Query: 276 EMAAYAGYSFRELLLWMVEDASC 298
           ++ A +G  + ELL  ++  A  
Sbjct: 303 QVFAASGVPYAELLDTLIARALA 325


>gi|217076879|ref|YP_002334595.1| D-alanine--D-alanine ligase [Thermosipho africanus TCF52B]
 gi|254767745|sp|B7IGP0|DDL_THEAB RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|217036732|gb|ACJ75254.1| D-alanine--D-alanine ligase [Thermosipho africanus TCF52B]
          Length = 367

 Score =  260 bits (666), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 78/346 (22%), Positives = 153/346 (44%), Gaps = 57/346 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           + +L G  S E E+S+ +     S ++   + +  I + +    +               
Sbjct: 4   VGLLFGSKSVEHEISIITAHQVLSFVDKNKYNIIPIYITKDGKWLTGKILEDLENFKNLE 63

Query: 46  ------------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81
                                   +  +  D+     HG+ GEDG +Q +LE L +PYT 
Sbjct: 64  RLEKKSKQISSISAKDGKLILHSNIKKITIDVCLLTFHGSNGEDGSIQGMLEFLNVPYTG 123

Query: 82  SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVIKPLKG 135
            G+ +S  +MDK+ +K ++    +PV   +  N+    +      + ++  P ++KP + 
Sbjct: 124 CGMYSSMYTMDKVITKLILKEKNIPVVDFLYTNKKNYTNDFLNHCKEVLEYPMIVKPARL 183

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195
           GSS+G+  +     +   +   ++++  D++++E+++D  EL C VMG  ++ V+EI   
Sbjct: 184 GSSIGVKKVNDKCELEEAI--ETAFSFDDKVIVEKWIDSRELNCAVMGYKNIVVSEIEEI 241

Query: 196 K--SDFYSYELKYSSLN---STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
           K   DF+ Y  KY       S H++PA I  ++   ++ +A     A+ C G  R DFL 
Sbjct: 242 KKQKDFFDYNEKYVQKGKKFSNHIIPAPIDENLKNTIKSIARDTFNALECHGNIRIDFLL 301

Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                K++  E+N  PG     +       +G++F +++  M+  A
Sbjct: 302 SK-DNKIYVNEVNSIPGALSYYL----WQMSGFTFSQVIDNMISIA 342


>gi|2833427|sp|Q47823|DDL_ENTGA RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|1244572|gb|AAB17903.1| D-alanine:D-alanine ligase [Enterococcus gallinarum]
          Length = 316

 Score =  260 bits (666), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 76/307 (24%), Positives = 133/307 (43%), Gaps = 44/307 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           + +L GG S+E +VSL S  +  +A+    ++V  + + R    +               
Sbjct: 3   IILLYGGRSAEHDVSLLSAFSVVNAVYYNYYQVQLVMITRDGQWLKGSLLTEAPTSKEVL 62

Query: 46  ---------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
                              +  + F +LHG  GEDG +Q  LE + +PY  +G+L SA  
Sbjct: 63  NLTDSAYQGTPIQPGEIKEEDAIVFPLLHGPNGEDGTIQGFLETIGMPYVGAGVLTSACG 122

Query: 91  MDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSLGI 141
           MDK+ +K ++ + G+P  P + V +              +  +  P  IKP   GSS+GI
Sbjct: 123 MDKIMTKYILQAAGIPQVPYVPVLKNYWKENPKKVFEQCEGSLLYPMFIKPANMGSSVGI 182

Query: 142 IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA--VPKSDF 199
              +  + +   L +  ++ +  + ++EQ ++  E+   V+G+  +  T     V    F
Sbjct: 183 TKAENREELQNALQE--AYRYDTRAIVEQGIEAREIEVAVLGNEDVRTTMPGEIVKDVAF 240

Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
           Y Y  KY        +PA+IP +   + Q  A  A+  +G  G+SR DF       ++F 
Sbjct: 241 YDYNSKYLDNKIEMQIPAQIPEETQAKAQEFAKKAYTMLGGSGLSRCDFFLTNK-NELFL 299

Query: 260 LEINVQP 266
            E+N  P
Sbjct: 300 NELNTIP 306


>gi|218676510|ref|YP_002395329.1| D-alanyl-alanine synthetase A [Vibrio splendidus LGP32]
 gi|254767747|sp|B7VRZ7|DDL_VIBSL RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|218324778|emb|CAV26458.1| D-alanine--D-alanine ligase [Vibrio splendidus LGP32]
          Length = 331

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 85/327 (25%), Positives = 145/327 (44%), Gaps = 34/327 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALED-AGFKVSQIDV------------------DRS 41
           + +L GG SSE EVS+ S       L     F V ++++                  D++
Sbjct: 6   ILLLCGGGSSEHEVSIVSANYLFEQLNSVTDFNVVRVEIKNEGWCLDSGELVYLDINDQT 65

Query: 42  VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +       K D     +HG  GE G +Q++ E+ +IPY   G  AS  S +K+ SK    
Sbjct: 66  LRGDNLESKVDFIVPCIHGFPGETGDIQSLFEMAKIPYLGCGSEASNNSFNKITSKLWYD 125

Query: 102 SCGVPVCPSILVNRFTMDSQHLIS------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
           + G+P  P + ++  T  +    +          +K  + GSS+G   + + + +   + 
Sbjct: 126 ALGIPNTPYLFLSDNTEQAHAQATQAFESWGKVFVKAARQGSSVGCYQVNQVEELSEAI- 184

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYSSL-- 209
            + ++   DQ+LIE+ V   EL       D  L ++   E+  P   FYSYE KYS+   
Sbjct: 185 -NKAFTFSDQVLIEKSVVPRELEVAAYEIDGELQISKPGEVIAPNGAFYSYEEKYSADSH 243

Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
           + T V    +  +  + +   A      +  R +SR DF       +++  E+N  PGMT
Sbjct: 244 SITEVEATNLTDEQRELIADSARKVFTQMKLRHLSRIDFFLT-QDNEIYLNEVNTFPGMT 302

Query: 270 PVSIFPEMAAYAGYSFRELLLWMVEDA 296
           P+S+FP+M  + G+ F + L   V  +
Sbjct: 303 PISMFPKMVEHDGHKFSQFLENCVRTS 329


>gi|294627726|ref|ZP_06706308.1| D-alanylalanine synthetase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
 gi|292598078|gb|EFF42233.1| D-alanylalanine synthetase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
          Length = 265

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 88/266 (33%), Positives = 135/266 (50%), Gaps = 11/266 (4%)

Query: 37  DVDRSVGLVLAHLKPDLAFNVL--HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKM 94
           DV   +   L     D  FNVL  H   GED +VQ + E   +PYT S +L SALSMDK+
Sbjct: 2   DVIGQLSKPLVAQHFDRVFNVLLGHNGGGEDDIVQGLTEPFGVPYTGSDVLGSALSMDKI 61

Query: 95  RSKQVVSSCGVPVCPSILVN-----RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS 149
           R+KQV  S G+       +           +   I  P ++KP   GSS+G+  +     
Sbjct: 62  RTKQVWLSLGLSTPRYARLAAGASAEDIHAAARQIGLPIIVKPANEGSSVGVSRVFDQAQ 121

Query: 150 IPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209
           +   +  ++   +   LL+EQ ++G ELT  V+GD +L    I VPK  +Y Y  KY + 
Sbjct: 122 LEEAVTLAA--RYDGALLMEQLIEGDELTVAVLGDTALPSIRI-VPKGQWYDYNAKYIAE 178

Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
           ++ ++ P  +  +   ++++LA  A  A GCRG  R D + D  S +++ LE+N  PGMT
Sbjct: 179 DTQYLCP-GLEGEAEAQIRQLALDAFHAAGCRGWGRVDVMRDGSSGQLYLLEVNTAPGMT 237

Query: 270 PVSIFPEMAAYAGYSFRELLLWMVED 295
             S+ P+ A   G  F  L+  ++E 
Sbjct: 238 SHSLVPKAARQLGIDFETLVWRVLEQ 263


>gi|228469448|ref|ZP_04054456.1| D-ala D-ala ligase [Porphyromonas uenonis 60-3]
 gi|228309023|gb|EEK17666.1| D-ala D-ala ligase [Porphyromonas uenonis 60-3]
          Length = 329

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 81/326 (24%), Positives = 145/326 (44%), Gaps = 36/326 (11%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           +A++ GG S E EVS  S +     ++ + F    + +      V               
Sbjct: 6   IAIICGGYSGEAEVSQRSAQTILKQIDQSLFTPYLVTITADAWSVTDATGREGTIDRALV 65

Query: 46  ----LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
                  +   +A+  +HG  GE+GL+Q  L++L IPYT  G+L  AL+ +K      ++
Sbjct: 66  ARFGAEEVTFAVAYITIHGTPGENGLLQGYLDMLGIPYTTGGVLCEALTFNKEACNAYLA 125

Query: 102 SCGVPVCPSILVNRFTMD--------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153
             G+ +  S  ++  T +         +  +  P  +KP  GGSS+    I++   +   
Sbjct: 126 HHGLRIARSQRLHNQTKELSPEEQQQIESTLRLPLFVKPNTGGSSIATTRIEQWDQLATA 185

Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCG--VMGDA--SLDVTEIAVPKSDFYSYELKYSSL 209
           ++   ++     +L+E+ + G E+TCG  ++ D   +L VTE+ V    F+ Y+ KY   
Sbjct: 186 VVD--AYTAAPDVLVEECIVGTEVTCGCVILPDEAFALPVTEV-VAHDTFFDYDAKY-YG 241

Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
            S  + PA+I  ++ + VQ  +      + C G  R DF+          LE+N  PGMT
Sbjct: 242 KSDEITPARISPELTQRVQETSLTIAHLLDCYGFVRIDFII-EADGIPTLLEVNTTPGMT 300

Query: 270 PVSIFPEMAAYAGYSFRELLLWMVED 295
             S  P+    AG    +L+  +++ 
Sbjct: 301 EASFIPQQVRAAGLQLSDLITRIIKS 326


>gi|258647059|ref|ZP_05734528.1| D-alanine--D-alanine ligase [Prevotella tannerae ATCC 51259]
 gi|260853175|gb|EEX73044.1| D-alanine--D-alanine ligase [Prevotella tannerae ATCC 51259]
          Length = 337

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 81/327 (24%), Positives = 147/327 (44%), Gaps = 37/327 (11%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-------------------DRS 41
           +A++ GG SSE +VSL S     S ++   + V  +++                   D +
Sbjct: 10  IAIVAGGDSSEHDVSLRSAAGILSFMDSQKYDVYIVEIKGNNWTAHYGQEDCPIDRNDFT 69

Query: 42  VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
                     D A+  +HG  GE+G++Q   +L+ IPY+ S +L  AL+ +K      + 
Sbjct: 70  FTATDGKHAFDFAYITIHGTPGENGILQGYFDLIGIPYSTSDVLVEALTFNKYALNTFLR 129

Query: 102 SC---GVPVCPSILVNRFTMDSQ-----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153
           S     + +  +ILV +   +         +  P  +KP  GGSS G+  +K   ++   
Sbjct: 130 SAADKALNIADAILVRKGETEPNDAYIVERLGLPCFVKPNAGGSSFGVTKVKTIDAVRPA 189

Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSL 209
           + ++      D+++IE+ + G E+TCG         +  +TE+ V + +F+ Y+ KY+  
Sbjct: 190 IEKAL--LESDEVMIEKMIVGTEITCGAYKKGNEIITFPITEV-VTEEEFFDYDAKYN-G 245

Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR--KVFWLEINVQPG 267
               + PA++     + V  +    +  + C GI R D++        ++  LEIN  PG
Sbjct: 246 KVDEITPARLAEATAERVSAMTKSIYGLLNCYGIIRIDYILSGKKGQEEINLLEINTTPG 305

Query: 268 MTPVSIFPEMAAYAGYSFRELLLWMVE 294
           MT  S  P+    AG    E+L  ++E
Sbjct: 306 MTTTSFIPQQVRAAGLEIAEVLSDIIE 332


>gi|50843773|ref|YP_057000.1| D-alanine--D-alanine ligase B [Propionibacterium acnes KPA171202]
 gi|50841375|gb|AAT84042.1| D-alanine--D-alanine ligase B [Propionibacterium acnes KPA171202]
 gi|332676729|gb|AEE73545.1| D-alanine--D-alanine ligase [Propionibacterium acnes 266]
          Length = 327

 Score =  260 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 86/309 (27%), Positives = 142/309 (45%), Gaps = 18/309 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VL GG+S +R++SL SG+  A AL   G +V + D+D ++   L      + F +LHG
Sbjct: 17  VVVLAGGLSHQRDISLKSGRTVAQALRRVGHEVVEADIDSALIETLRANDGAVVFPMLHG 76

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GE+G +  +L+L+ IPY  S      +S DK  + + V++ G+     + +       
Sbjct: 77  GLGENGALLEVLQLMGIPYVGSSPATCRISFDKSIASRAVAAAGIVTPQQVALPHDVFRE 136

Query: 121 ----------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                           P ++KP +GGSSLG+  +     +P  +    ++ + D +++E+
Sbjct: 137 LGAQTVMRSIAEKFGLPVIVKPARGGSSLGVTKVDGVDDLPQAVAN--AYAYDDMVVVEE 194

Query: 171 YVDGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE 226
           ++ G EL  G++    G   L   EI  P    Y Y   Y+   +    PA I     + 
Sbjct: 195 FIVGTELAIGMITTSEGTRVLPAVEIR-PVGGVYDYSAMYTGGETRLTAPADISDTAAQT 253

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
              +A +  + +   GISR D + D   R VF LE    PGMT  S+ P     AG    
Sbjct: 254 ATAMARVVQKELDFSGISRVDAIVDESGRPVF-LEAGAAPGMTATSLVPVAMKAAGLDLG 312

Query: 287 ELLLWMVED 295
           E+   +V+D
Sbjct: 313 EVCSRLVDD 321


>gi|85858831|ref|YP_461033.1| D-alanine--D-alanine ligase [Syntrophus aciditrophicus SB]
 gi|85721922|gb|ABC76865.1| D-alanine--D-alanine ligase [Syntrophus aciditrophicus SB]
          Length = 355

 Score =  260 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 105/338 (31%), Positives = 167/338 (49%), Gaps = 46/338 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD------------------RSV 42
           + ++M G+SSE+EVSL SG+   S ++   +    I +D                  R V
Sbjct: 11  VGIIMAGLSSEKEVSLESGRNIFSKIDRRKYSPIPIFMDSDAALWEIPLKLLMRNCTRDV 70

Query: 43  GLVLAHL-----------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSM 91
              LA             + DL F  LHG +GEDG +Q +LELL+IPYT SG+LASAL M
Sbjct: 71  EEDLAEEAVRVPYEELKTRVDLVFLALHGKYGEDGCMQGLLELLKIPYTGSGVLASALGM 130

Query: 92  DKMRSKQVVSSCGVPVCPSILVNRFTMDSQH----------LISPPYVIKPLKGGSSLGI 141
           DK+ S++V+   G+ V  ++ V R     +            I  P V+KP + G S G+
Sbjct: 131 DKLASRRVLEINGIDVPRTVPVFRGAWKPEEENALFERIEQEIGFPCVVKPSREGCSTGV 190

Query: 142 IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA---SLDVTEIAVPKSD 198
             +     +   L  + ++      L+E+++DG+E+TCG++G     +L  +E  +  SD
Sbjct: 191 KKVMSRAGLSDAL--NGAFLWDCTALVEEFIDGMEVTCGILGGNPPTALTPSE-TIATSD 247

Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
             S E K+      +  PA++P +   ++Q +A  A +A+  +G +R D       R V 
Sbjct: 248 VLSLEDKFLYGQGENKTPARLPGETLMKIQEVAVKAFEALDLKGYARIDMFVTSAGR-VL 306

Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            LE N QPGMTP ++    AA +G +   L+  ++E A
Sbjct: 307 VLEPNTQPGMTPSTVLFHQAAASGITQTGLVDRILEAA 344


>gi|153800674|ref|ZP_01955260.1| D-alanine--D-alanine ligase [Vibrio cholerae MZO-3]
 gi|124123809|gb|EAY42552.1| D-alanine--D-alanine ligase [Vibrio cholerae MZO-3]
          Length = 334

 Score =  260 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 89/324 (27%), Positives = 144/324 (44%), Gaps = 34/324 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDVDRSVGLVLAHL---------- 49
           + +L GG SSE E+SL S       LE    F V ++++ +                   
Sbjct: 6   ILLLCGGGSSEHEISLVSANYIQQQLELTPEFHVIRVEMKKEGWFSEQGALVYLDTNSAT 65

Query: 50  --------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
                     D     +HG  GE G +Q++LEL  IPY   G  ASA S +K+ SK    
Sbjct: 66  LNSDNTSYPIDFVVPCIHGFPGETGDIQSMLELAGIPYLGCGPEASANSFNKITSKLWYD 125

Query: 102 SCGVPVCPSILVNRFTMDSQHLISPPY------VIKPLKGGSSLGIIVIKKDQSIPLDLL 155
           + G+P  P + + +    S       +       +K  + GSS+G   +  +  I   + 
Sbjct: 126 ALGIPNTPYLFLTQNAPSSIEKAKQAFGHWGSIFVKAARQGSSVGCYKVTTEDQIAPAI- 184

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYSSLN- 210
             +++   +Q+L+EQ V   EL       +  L ++   E+  P+  FYSYE KYS+ + 
Sbjct: 185 -EAAFGFSEQVLVEQAVKPRELEVSAYEMNGKLYISKPGEVIAPEGTFYSYEEKYSANSH 243

Query: 211 STHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
           +  VL A+ +     + +Q  A      +  R +SR DF       +++  E+N  PGMT
Sbjct: 244 ARTVLEAENLTEKQKELIQTYAEHVFIHMKLRHLSRIDFFLT-QEGQIYLNEVNTFPGMT 302

Query: 270 PVSIFPEMAAYAGYSFRELLLWMV 293
           P+S+FP+M  + G+ F E L   V
Sbjct: 303 PISMFPKMLEHNGHRFSEFLAQCV 326


>gi|88802384|ref|ZP_01117911.1| D-alanylalanine synthetase [Polaribacter irgensii 23-P]
 gi|88781242|gb|EAR12420.1| D-alanylalanine synthetase [Polaribacter irgensii 23-P]
          Length = 324

 Score =  260 bits (664), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 90/324 (27%), Positives = 160/324 (49%), Gaps = 34/324 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI-----------------DVDRSVG 43
           +A++MGG SSE ++S+ SG      L+   +   ++                  +D++  
Sbjct: 5   IAIIMGGYSSEADISIKSGNVVYDNLDKEKYTAYRVLISTEKWVALDADGTAYPIDKNNF 64

Query: 44  LVL---AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
             L   A +  D  FN +HG  GE+G + A   L+ + +T +     AL+ +K  +  VV
Sbjct: 65  SFLLQDASILFDCVFNAIHGAPGENGELLAYFNLINLKHTSASFYQMALTYNKRDTLCVV 124

Query: 101 SSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
            + G+    ++ +N+            +  P  IKP K GSS GI  +   ++I   +  
Sbjct: 125 KAYGIQTATAVYLNKGAAIDLDTIIAKVGLPCFIKPNKAGSSFGISKVYSREAILPAIAL 184

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMG----DASLDVTEIAVPKSDFYSYELKYSSLNST 212
             ++    ++LIE ++ GIE++ GV+        L +TEI V ++DF+ Y+ KY+   S 
Sbjct: 185 --AYKEDSEILIESFLKGIEVSVGVISYQGVTTVLPITEI-VSENDFFDYDAKYN-GKSK 240

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
            + PA+I  +  K+V+  A   ++ +   G SRS+F+F  ++ + ++LEIN+ PG+T  S
Sbjct: 241 EITPARITKEQRKKVEEAAKNVYEILNLTGFSRSEFIF--VNEEPYFLEINMVPGLTTQS 298

Query: 273 IFPEMAAYAGYSFRELLLWMVEDA 296
           I P+ A  AG S  +L    +  A
Sbjct: 299 ILPQQALAAGISLADLFDNAIVSA 322


>gi|332672285|ref|YP_004455293.1| D-alanine--D-alanine ligase [Cellulomonas fimi ATCC 484]
 gi|332341323|gb|AEE47906.1| D-alanine--D-alanine ligase [Cellulomonas fimi ATCC 484]
          Length = 315

 Score =  260 bits (664), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 97/305 (31%), Positives = 160/305 (52%), Gaps = 15/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG+S ER+VSL SG+  A AL   G +VS  DVD  +   L  L+PDL + +LHG
Sbjct: 9   VAVLAGGLSHERDVSLRSGRRVAEALRSVGVEVSVHDVDADLVPALTDLRPDLVWPLLHG 68

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN------ 114
             GEDG V+ +++LL +    +G  AS ++  K  +K VV+  G+     + +       
Sbjct: 69  ATGEDGSVRDVVQLLGLRLLGTGPRASRVAWSKPIAKTVVARAGLATPEFVTLPQSLFRE 128

Query: 115 ----RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
               R        +  P V+KP +GGS+LG+ ++     +P  ++   +  + D  LIE+
Sbjct: 129 LGAGRVLDAVVARLGLPLVVKPSRGGSALGVTLVTDADDLPRAMVDCFA--YSDTALIER 186

Query: 171 YVDGIELTCGVM--GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
            V G E+   V+  GD  + +  + +     Y Y+ +Y+     +  PA++   + + V 
Sbjct: 187 AVVGTEVAVSVVDTGDGPVPLPAVEIVTDGPYDYDARYNPGRVEYFTPARLDAVMARRVG 246

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
            +A  AH A+G   +SR+D + D      ++LE+NV PGMT  S+FP+ A  AG++  +L
Sbjct: 247 EVAVAAHTALGLARLSRTDLVVDA-EGTPWFLEVNVAPGMTETSLFPQAAEGAGHNLGDL 305

Query: 289 LLWMV 293
              +V
Sbjct: 306 YRSLV 310


>gi|332669024|ref|YP_004452032.1| D-alanine/D-alanine ligase [Cellulomonas fimi ATCC 484]
 gi|332338062|gb|AEE44645.1| D-alanine/D-alanine ligase [Cellulomonas fimi ATCC 484]
          Length = 323

 Score =  259 bits (663), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 89/310 (28%), Positives = 143/310 (46%), Gaps = 22/310 (7%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +AV+ GG S E EVSL+S  +   AL D  + V  + + R         +P         
Sbjct: 8   VAVVGGGQSCEHEVSLASAASVVGALTD-RYDVVPLTITRDGTWCDEVGRPVGLARAVQT 66

Query: 52  ----DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV 107
                    ++HG  GEDG + A+ EL  +PY  SG+ A AL+MDK  +K V  + GV  
Sbjct: 67  LGTCAAVVPMVHGPRGEDGTLAALCELAGVPYVGSGVGAGALAMDKWATKLVAQAVGVAT 126

Query: 108 CPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL 167
            P  L+      + ++   P V+KP+  GSS G+ +++    +   L   ++     ++L
Sbjct: 127 APGRLLT-AATAAAYVFEHPVVVKPVAAGSSHGVTLVRDAGGLRPAL--DAALRLDGRVL 183

Query: 168 IEQYVDGIELTCGVM--GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
           +E  V+G E+   V+  GD  +    + V     + +  KY    +   +PA +P    +
Sbjct: 184 VEDVVEGREVDVAVLATGDGHVVAPLLEVVVDGLFDHAAKYG-GTADLRVPADVPEADAQ 242

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285
            ++  A     A+GC G++R DF            E+N  PG+T  S  P M A AG S+
Sbjct: 243 ALRDAAVRVFDALGCAGVARVDFFLTADG--PVLNEVNTTPGLTEHSQVPRMFAAAGLSY 300

Query: 286 RELLLWMVED 295
            +LL  +V D
Sbjct: 301 PDLLDRLVRD 310


>gi|329944757|ref|ZP_08292836.1| D-ala D-ala ligase protein [Actinomyces sp. oral taxon 170 str.
           F0386]
 gi|328529893|gb|EGF56783.1| D-ala D-ala ligase protein [Actinomyces sp. oral taxon 170 str.
           F0386]
          Length = 315

 Score =  259 bits (663), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 82/307 (26%), Positives = 141/307 (45%), Gaps = 16/307 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG+S ER++SL SG   A  L+  G  V  +D+D      L    PD+ + ++HG
Sbjct: 8   IAVLAGGLSHERDISLRSGHRVAQVLKHLGHTVLVLDIDARTIGSLKTFGPDVVWPLVHG 67

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +L  L +PY  +       +  K  +K  V + GV    S+ +       
Sbjct: 68  GPGEDGGLQNMLIALGLPYVGTHSDGCQRASFKPTAKASVRTGGVITPDSLTLPHSYFSQ 127

Query: 121 ----------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                        +  P V+KP +GGS LG+        +   ++  + + + ++ LIE+
Sbjct: 128 LGAQEVLTVVAGHLGLPVVVKPHQGGSGLGVSYASTADELRSAMV--ACFAYDERALIER 185

Query: 171 YVDGIELTCGVMGDASLD--VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           YV G EL   V+        +  + V     Y ++ +Y+   S + +PA++   + + V+
Sbjct: 186 YVPGTELAVSVVDTGEGPRALPPVEVVTDGQYDFDARYNPGRSEYFVPARLNDSVIEMVK 245

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
             A   H  +G   +SR+D + D      +++++NV PGMT  S+ P  A   G     L
Sbjct: 246 STAVTVHSTLGLGNLSRTDLILDE-EGTPWFIDVNVIPGMTETSLLPIAAKAEG-GLEGL 303

Query: 289 LLWMVED 295
              +V +
Sbjct: 304 YDALVRN 310


>gi|333024204|ref|ZP_08452268.1| putative D-alanyl-alanine synthetase A [Streptomyces sp. Tu6071]
 gi|332744056|gb|EGJ74497.1| putative D-alanyl-alanine synthetase A [Streptomyces sp. Tu6071]
          Length = 345

 Score =  259 bits (663), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 88/281 (31%), Positives = 139/281 (49%), Gaps = 22/281 (7%)

Query: 33  VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
           V ++       +  A  + D+ F +LHG +GEDG +Q +LEL   PY  +G+LASA+  D
Sbjct: 62  VREVVYTEPGSVPKALGEVDVVFPMLHGPYGEDGTLQGLLELSGTPYVGAGVLASAVGQD 121

Query: 93  KMRSKQVVSSCGVPVCPSILV------------NRFTMDSQHLISPPYVIKPLKGGSSLG 140
           K   K++ +S G+ V P +++             R   D       P  +KP +GGSS+G
Sbjct: 122 KEYMKRIFTSFGLAVGPYLVIRPREWEQDPDAARRRIADFAGDHGWPLFVKPARGGSSVG 181

Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG-----DASLDVTEIAVP 195
           I  +       LD   + +  H  + LIE  V G E+ CGV+       AS+      V 
Sbjct: 182 ISKVDGFD--GLDEAIAEARRHDPKFLIEALVQGREIECGVLEFEDGPRASVPAEIPPVT 239

Query: 196 KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255
              +Y +E KY   +++ ++PA +  +   EVQRLA  A +A  C G+ R+DF       
Sbjct: 240 DHAYYDFEAKY-IDSASGLVPAPLTPEETAEVQRLAVAAFEATSCEGLVRADFFLT--DD 296

Query: 256 KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                EIN  PG TP+S++P+M   +G  + EL+  +++ A
Sbjct: 297 GFVINEINTMPGFTPISMYPQMWEKSGVGYAELVDRLIQAA 337


>gi|84392313|ref|ZP_00991740.1| D-alanylalanine synthetase [Vibrio splendidus 12B01]
 gi|84376433|gb|EAP93313.1| D-alanylalanine synthetase [Vibrio splendidus 12B01]
          Length = 331

 Score =  259 bits (663), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 86/328 (26%), Positives = 145/328 (44%), Gaps = 36/328 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALED-AGFKVSQIDVDRSVGLVLA------------ 47
           + +L GG SSE EVSL S       L   A F V ++++ ++ G  L             
Sbjct: 6   ILLLCGGGSSEHEVSLVSANYLFEQLNSVADFNVVRVEI-KNEGWCLDSGELVYLDINNQ 64

Query: 48  -------HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
                    K D     +HG  GE G +Q++ E+ +IPY   G  AS  S +K+ SK   
Sbjct: 65  TLRGDNLESKVDFIVPCIHGFPGETGDIQSLFEMAKIPYLGCGSEASNNSFNKITSKLWY 124

Query: 101 SSCGVPVCPSILVNRFTMDSQHLIS------PPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154
            + G+P  P + ++     +    +          +K  + GSS+G   + + + +   +
Sbjct: 125 DALGIPNTPYLFLSDNNDQAHSQATQAFENWGKVFVKAARQGSSVGCYQVNQVEDLSEAI 184

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYSSL- 209
             + ++   DQ+L+E+ V   EL       D  L ++   E+  P   FYSYE KYSS  
Sbjct: 185 --NKAFTFSDQVLVEKSVVPRELEVAAYEIDGELHISKPGEVIAPNGAFYSYEEKYSSDS 242

Query: 210 -NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268
            + T +    +  +  + +   A      +  R +SR DF       +++  E+N  PGM
Sbjct: 243 HSITEIEANNLTDEQLELIADSARKVFTQMKLRHLSRIDFFLT-QDNEIYLNEVNTFPGM 301

Query: 269 TPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           TP+S+FP+M  + G+ F + L   V  +
Sbjct: 302 TPISMFPKMVEHDGHKFSQFLENCVRTS 329


>gi|328755989|gb|EGF69605.1| D-ala D-ala ligase [Propionibacterium acnes HL087PA1]
          Length = 315

 Score =  259 bits (662), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 86/309 (27%), Positives = 142/309 (45%), Gaps = 18/309 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VL GG+S +R++SL SG+  A AL   G +V + D+D ++   L      + F +LHG
Sbjct: 5   VVVLAGGLSHQRDISLKSGRTVAQALRRGGHEVVEADIDSALIETLRANDGAVVFPMLHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GE+G +  +L+L+ IPY  S      +S DK  + + V++ G+     + +       
Sbjct: 65  GLGENGALLEVLQLMGIPYVGSSPATCRISFDKSIASRAVAAAGIVTPQQVALPHDVFRE 124

Query: 121 ----------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                           P ++KP +GGSSLG+  +     +P  +    ++ + D +++E+
Sbjct: 125 LGAQTVMRSIAEKFGLPVIVKPARGGSSLGVTKVDGVDDLPQAVAN--AYAYDDMVVVEE 182

Query: 171 YVDGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE 226
           ++ G EL  G++    G   L   EI  P    Y Y   Y+   +    PA I     + 
Sbjct: 183 FIVGTELAIGMITTSEGTRVLPAVEIR-PVGGVYDYSAMYTGGETRLTAPADISDTAAQT 241

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
              +A +  + +   GISR D + D   R VF LE    PGMT  S+ P     AG    
Sbjct: 242 ATAMARVVQKELDFSGISRVDAIVDESGRPVF-LEAGAAPGMTATSLVPVAMKAAGLDLG 300

Query: 287 ELLLWMVED 295
           E+   +V+D
Sbjct: 301 EVCSRLVDD 309


>gi|327404081|ref|YP_004344919.1| D-alanine--D-alanine ligase [Fluviicola taffensis DSM 16823]
 gi|327319589|gb|AEA44081.1| D-alanine--D-alanine ligase [Fluviicola taffensis DSM 16823]
          Length = 321

 Score =  259 bits (662), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 96/321 (29%), Positives = 153/321 (47%), Gaps = 34/321 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           + +  GG SSE E+SL S +         G++V  I V      V               
Sbjct: 4   VGLFCGGYSSEFEISLKSAQTIMDNFP-LGYEVVPIHVVEEGWFVPMNTEKLPFSIESMS 62

Query: 47  -----AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
                   K D+    +HGN GE+G +QA+L++  +PY +S  LAS LS DK    Q ++
Sbjct: 63  YSINGKERKIDIGLIYIHGNPGENGKIQALLDIKGVPYVNSNALASELSFDKWYCNQFLA 122

Query: 102 SCGVPVCPSILVNR----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
             GVPV  S+ +N        +    +  P  +KP   GSS GI  + K   + + L + 
Sbjct: 123 RFGVPVAKSLFLNSPKKFTNQEILDQLGLPCFVKPCDSGSSFGISKVSKASDLQVALDK- 181

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTH 213
            ++  GD ++IE ++ G E+TCG+     G  +L +TEI V ++DF+ YE KY    S  
Sbjct: 182 -AFEEGDTIVIESFLKGTEVTCGIYRSTSGLVTLPLTEI-VTENDFFDYEAKYL-GQSQE 238

Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273
           + PA+IP  I + V   +   +  +  + I+R DF+   +    + +E+N  PG +  S+
Sbjct: 239 ITPARIPDSIKELVWEQSKQVYSLLQLKSIARIDFML--VDDIPYVIEVNTTPGFSAASL 296

Query: 274 FPEMAAYAGYSFRELLLWMVE 294
            P+M A AG S  +    + E
Sbjct: 297 VPQMLAEAGISIIDFWTEIFE 317


>gi|262189715|ref|ZP_06048079.1| D-alanine--D-alanine ligase [Vibrio cholerae CT 5369-93]
 gi|262034402|gb|EEY52778.1| D-alanine--D-alanine ligase [Vibrio cholerae CT 5369-93]
          Length = 334

 Score =  259 bits (662), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 90/324 (27%), Positives = 147/324 (45%), Gaps = 34/324 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDVDR------------------S 41
           + +L GG SSE E+SL S       LE    F V ++++ +                  +
Sbjct: 6   ILLLCGGGSSEHEISLVSANYIQQQLELTPEFHVIRVEMKKEGWFSEQGALVYLDTNSAT 65

Query: 42  VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +    A    D     +HG  GE G +Q++LEL  IPY   G  ASA S +K+ SK    
Sbjct: 66  LNSDKASYPIDFVVPCIHGFPGETGDIQSMLELAGIPYLGCGPEASANSFNKITSKLWYD 125

Query: 102 SCGVPVCPSILVNRFTMDSQHLISPPY------VIKPLKGGSSLGIIVIKKDQSIPLDLL 155
           +  +P  P + + + T  S       +       +K  + GSS+G   +  +  I   + 
Sbjct: 126 ALDIPNTPYLFLTQNTPSSIDKAKQAFGHWGSIFVKAARQGSSVGCYKVTTEDQIAPAI- 184

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYSSLN- 210
             +++   +Q+L+EQ V   EL       +  L ++   E+  P+  FYSYE KYS+ + 
Sbjct: 185 -EAAFGFSEQVLVEQAVKPRELEVSAYEMNGKLYISKPGEVIAPEGTFYSYEEKYSANSH 243

Query: 211 STHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
           +  VL A+ +     + +Q  A      +  R +SR DF       +++  E+N  PGMT
Sbjct: 244 ARTVLEAENLTEKHKELIQTYAERVFIHMNLRHLSRIDFFLT-QEGQIYLNEVNTFPGMT 302

Query: 270 PVSIFPEMAAYAGYSFRELLLWMV 293
           P+S+FP+M  + G+ F E L   V
Sbjct: 303 PISMFPKMLEHNGHRFSEFLAQCV 326


>gi|160914186|ref|ZP_02076408.1| hypothetical protein EUBDOL_00195 [Eubacterium dolichum DSM 3991]
 gi|158433997|gb|EDP12286.1| hypothetical protein EUBDOL_00195 [Eubacterium dolichum DSM 3991]
          Length = 392

 Score =  259 bits (662), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 79/356 (22%), Positives = 147/356 (41%), Gaps = 66/356 (18%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           + V  GG S E E+S+ S      A+    ++V  + + +   L+               
Sbjct: 17  VVVAFGGESVEHEISILSAHQVMQAMNPMKYEVIPLYIAKDGRLLYHPLNTELERFENLD 76

Query: 46  ----------------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEI 77
                                          +  D+ F +LHG  GEDG  Q  L  L I
Sbjct: 77  KVEREGYEVSLQRRGNRFYMCPNKYSFLRKEISFDMVFPILHGTHGEDGTFQGYLSTLHI 136

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIK 131
           PY    +L  A+  DK+  KQ++   G+PV P         ++         +  P ++K
Sbjct: 137 PYIGCSVLGGAIGQDKIIMKQILEDSGLPVAPWFYWTLLKPLDDTFFRKAERLGYPLIVK 196

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE-LTCGVMGDA---SL 187
           P   GSS+G+  ++ +  +   +++  ++ +  +++IE+ ++ ++ + C V+GD      
Sbjct: 197 PANLGSSIGVAKVENEVELHRAMIE--AYQYDGRVVIEKAIEHVQEINCAVLGDEQTCEA 254

Query: 188 DVTEIAVPKSDFYSYELKYSSL-------NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
            V E  +   D  SY  KY          N+   +PA+I  ++  E+Q LA    + +  
Sbjct: 255 SVLEEVLSSKDILSYADKYVCGEGVKGIVNTRRCIPARIDEELALEIQTLAKECFRCLCA 314

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            G  R DFL++  ++ ++  EIN  PG    S+   +   +   F +L+  +V+ A
Sbjct: 315 SGTGRIDFLYNRETKDLYINEINTIPG----SLAFYLWEKSNLPFPKLIDRLVQIA 366


>gi|311745473|ref|ZP_07719258.1| D-alanine--D-alanine ligase [Algoriphagus sp. PR1]
 gi|126578026|gb|EAZ82246.1| D-alanine--D-alanine ligase [Algoriphagus sp. PR1]
          Length = 328

 Score =  259 bits (662), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 85/324 (26%), Positives = 153/324 (47%), Gaps = 32/324 (9%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40
           +A++ GG + E  +SL S       +    ++V +I +                    D 
Sbjct: 5   IALVTGGYTGESVISLKSAAVVEKTINRELYEVYKILIYPGDWHFLSVSGEKIPVDLNDF 64

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           S+ +    +  D  FN+LHG+ GEDG +    +++ IPYT    L SA++M+K  +K VV
Sbjct: 65  SIRIGDDKITFDGVFNILHGSPGEDGKLAGYFDMIGIPYTTCDQLTSAITMNKGYTKAVV 124

Query: 101 SS-CGVPVCPSI-LVNRFTMDS---QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
                + +  SI L +  +++    Q  ++ P  IKP  GGSS+G+  +K    +   L 
Sbjct: 125 DDIEELHIAKSIQLFDNSSLNQNRIQEELTLPLFIKPNNGGSSIGMSKVKTWDELGEALD 184

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNS 211
           +  +++   Q+L+E++V G E + GV         L  TEI V   +F+ +E KY +  +
Sbjct: 185 K--AFDEDSQVLVEEFVSGREFSIGVFKGKGQVTVLPATEI-VSSKEFFDFEAKYVAGVT 241

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271
             + P ++  +    V R+A   ++ + C+G  R D+     S K +++EIN  PG T  
Sbjct: 242 NEITPGRMNEEEISRVNRIAAKIYEKLNCKGSVRIDYFLQEGSGKFYFIEINTVPGQTET 301

Query: 272 SIFPEMAAYAGYSFRELLLWMVED 295
           S+  +     G   R+    ++E+
Sbjct: 302 SLISQQVRAYGMEVRDFYTQLIEE 325


>gi|229513248|ref|ZP_04402713.1| D-alanine--D-alanine ligase [Vibrio cholerae TMA 21]
 gi|229349658|gb|EEO14613.1| D-alanine--D-alanine ligase [Vibrio cholerae TMA 21]
          Length = 334

 Score =  259 bits (662), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 89/324 (27%), Positives = 144/324 (44%), Gaps = 34/324 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDVDRSVGLVLAHL---------- 49
           + +L GG SSE E+SL S       LE    F V ++++ +                   
Sbjct: 6   ILLLCGGGSSEHEISLVSANYIQQQLELTPEFHVIRVEMKKEGWFSEQGALVYLDTNSAT 65

Query: 50  --------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
                     D     +HG  GE G +Q++LEL  IPY   G  ASA S +K+ SK    
Sbjct: 66  LNSDNTSYPIDFVVPCIHGFPGETGDIQSMLELAGIPYLGCGPEASANSFNKITSKLWYD 125

Query: 102 SCGVPVCPSILVNRFTMDSQHLISPPY------VIKPLKGGSSLGIIVIKKDQSIPLDLL 155
           +  +P  P + + + T  S       +       +K  + GSS+G   +  +  I   + 
Sbjct: 126 ALDIPNTPYLFLTQNTPSSIEKAKQAFGHWGSIFVKAARQGSSVGCYKVTTEDQIAPAI- 184

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYSSLN- 210
             +++   +Q+L+EQ V   EL       +  L ++   E+  P+  FYSYE KYS+ + 
Sbjct: 185 -EAAFGFSEQVLVEQAVKPRELEVSAYEMNGKLYISKPGEVIAPEGTFYSYEEKYSANSH 243

Query: 211 STHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
           +  VL A+ +     + +Q  A      +  R +SR DF       +++  E+N  PGMT
Sbjct: 244 ARTVLEAENLTEKHKELIQTYAERVFIHMKLRHLSRIDFFLT-QDGQIYLNEVNTFPGMT 302

Query: 270 PVSIFPEMAAYAGYSFRELLLWMV 293
           P+S+FP+M  + G+ F E L   V
Sbjct: 303 PISMFPKMLEHNGHRFSEFLAQCV 326


>gi|229526882|ref|ZP_04416286.1| D-alanine--D-alanine ligase [Vibrio cholerae bv. albensis VL426]
 gi|229527573|ref|ZP_04416964.1| D-alanine--D-alanine ligase [Vibrio cholerae 12129(1)]
 gi|229333935|gb|EEN99420.1| D-alanine--D-alanine ligase [Vibrio cholerae 12129(1)]
 gi|229337040|gb|EEO02058.1| D-alanine--D-alanine ligase [Vibrio cholerae bv. albensis VL426]
          Length = 334

 Score =  258 bits (661), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 90/324 (27%), Positives = 147/324 (45%), Gaps = 34/324 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDVDR------------------S 41
           + +L GG SSE E+SL S       LE    F V ++++ +                  +
Sbjct: 6   ILLLCGGGSSEHEISLVSANYIQQQLELTPEFHVIRVEMKKEGWFSEQGALVYLDTNSAT 65

Query: 42  VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +    A    D     +HG  GE G +Q++LEL  IPY   G  ASA S +K+ SK    
Sbjct: 66  LNSDKASYPIDFVVPCIHGFPGETGDIQSMLELAGIPYLGCGPEASANSFNKITSKLWYD 125

Query: 102 SCGVPVCPSILVNRFTMDSQHLISPPY------VIKPLKGGSSLGIIVIKKDQSIPLDLL 155
           +  +P  P + + + T  S       +       +K  + GSS+G   +  +  I   + 
Sbjct: 126 ALDIPNTPYLFLTQNTPSSIEKAKQAFGHWGSIFVKAARQGSSVGCYKVTTEDQIAPAI- 184

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYSSLN- 210
             +++   +Q+L+EQ V   EL       +  L ++   E+  P+  FYSYE KYS+ + 
Sbjct: 185 -EAAFGFSEQVLVEQAVKPRELEVSAYEMNGKLYISKPGEVIAPEGTFYSYEEKYSANSH 243

Query: 211 STHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
           +  VL A+ +     + +Q  A      +  R +SR DF       +++  E+N  PGMT
Sbjct: 244 ARTVLEAENLTEKHKELIQTYAERVFIHMKLRHLSRIDFFLT-QEGQIYLNEVNTFPGMT 302

Query: 270 PVSIFPEMAAYAGYSFRELLLWMV 293
           P+S+FP+M  + G+ F E L   V
Sbjct: 303 PISMFPKMLEHNGHRFSEFLAQCV 326


>gi|254226469|ref|ZP_04920055.1| D-alanine--D-alanine ligase [Vibrio cholerae V51]
 gi|125621031|gb|EAZ49379.1| D-alanine--D-alanine ligase [Vibrio cholerae V51]
          Length = 334

 Score =  258 bits (661), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 90/324 (27%), Positives = 147/324 (45%), Gaps = 34/324 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDVDR------------------S 41
           + +L GG SSE E+SL S       LE    F V ++++ +                  +
Sbjct: 6   ILLLCGGGSSEHEISLVSANYIQQQLELTPEFHVIRVEMKKEGWLSEQGALVYLDTNSAT 65

Query: 42  VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +    A    D     +HG  GE G +Q++LEL  IPY   G  ASA S +K+ SK    
Sbjct: 66  LNSDKASYPIDFVVPCIHGFPGETGDIQSMLELAGIPYLGCGPEASANSFNKITSKLWYD 125

Query: 102 SCGVPVCPSILVNRFTMDSQHLISPPY------VIKPLKGGSSLGIIVIKKDQSIPLDLL 155
           +  +P  P + + + T  S       +       +K  + GSS+G   +  +  I   + 
Sbjct: 126 ALDIPNTPYLFLTQNTPSSIEKAKQAFGHWGSIFVKAARQGSSVGCYKVTTEDQIAPAI- 184

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYSSLN- 210
             +++   +Q+L+EQ V   EL       +  L ++   E+  P+  FYSYE KYS+ + 
Sbjct: 185 -EAAFGFSEQVLVEQAVKPRELEVSAYEMNGKLYISKPGEVIAPEGTFYSYEEKYSANSH 243

Query: 211 STHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
           +  VL A+ +     + +Q  A      +  R +SR DF       +++  E+N  PGMT
Sbjct: 244 ARTVLEAENLTEKHKELIQTYAERVFIHMKLRHLSRIDFFLT-QEGQIYLNEVNTFPGMT 302

Query: 270 PVSIFPEMAAYAGYSFRELLLWMV 293
           P+S+FP+M  + G+ F E L   V
Sbjct: 303 PISMFPKMLEHNGHRFSEFLAQCV 326


>gi|156977000|ref|YP_001447906.1| D-alanyl-alanine synthetase A [Vibrio harveyi ATCC BAA-1116]
 gi|166198513|sp|A7N512|DDL_VIBHB RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|156528594|gb|ABU73679.1| hypothetical protein VIBHAR_05785 [Vibrio harveyi ATCC BAA-1116]
          Length = 329

 Score =  258 bits (661), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 84/327 (25%), Positives = 145/327 (44%), Gaps = 34/327 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDVDRSVGLV----LAHLKP---- 51
           + +L GG SSE E+SL S       L       V+++++     +     L +L P    
Sbjct: 5   ILLLCGGGSSEHEISLLSANFVEQQLNLIENVSVTRVEIKNEGWVTNQGELVYLDPNQKK 64

Query: 52  ----------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
                     D     +HG  GE G +Q++ E+  IPY   G  AS+ S +K+ SK    
Sbjct: 65  LCSDNLSLDVDFIVPCIHGFPGETGDIQSMFEIAGIPYLGCGPEASSNSFNKITSKLWYD 124

Query: 102 SCGVPVCPSILVNRFTMDSQHLIS------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
           + G+P  P + + R    +               +K  + GSS+G   +   QS+   + 
Sbjct: 125 AIGIPNTPYLFLTRNDEQAHEQALQAFDKWGKVFVKAARQGSSVGCYSVTNKQSVSQAV- 183

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYSSLNS 211
            + ++ + +Q+L+E+ V   EL       +  L +T   E+  P   FYSY+ KYS+ + 
Sbjct: 184 -NDAFGYSEQVLVEKSVKPRELEVAAYEMNGELHITKPGEVIAPDGAFYSYDEKYSTSSH 242

Query: 212 --THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
             T V    +  +  + ++  +    + +  R +SR DF       +++  E+N  PGMT
Sbjct: 243 SLTEVEAKNLTEEQVEAIRVASETVFKQMNLRHLSRIDFFLTE-DGEIYLNEVNTFPGMT 301

Query: 270 PVSIFPEMAAYAGYSFRELLLWMVEDA 296
           P+S+FP+M    G+ F E L   +  A
Sbjct: 302 PISMFPKMLQNNGHKFHEFLADCINTA 328


>gi|147671582|ref|YP_001215354.1| D-alanyl-alanine synthetase A [Vibrio cholerae O395]
 gi|262168425|ref|ZP_06036121.1| D-alanine--D-alanine ligase [Vibrio cholerae RC27]
 gi|189083064|sp|A5F083|DDL_VIBC3 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|146313965|gb|ABQ18505.1| D-alanine--D-alanine ligase [Vibrio cholerae O395]
 gi|227015368|gb|ACP11577.1| D-alanine--D-alanine ligase [Vibrio cholerae O395]
 gi|262022954|gb|EEY41659.1| D-alanine--D-alanine ligase [Vibrio cholerae RC27]
          Length = 329

 Score =  258 bits (661), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 90/324 (27%), Positives = 147/324 (45%), Gaps = 34/324 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDVDR------------------S 41
           + +L GG SSE E+SL S       LE    F V ++++ +                  +
Sbjct: 6   ILLLCGGGSSEHEISLVSANYIQQQLELTPEFHVIRVEMKKEGWFSEQGALVYLDTNSAT 65

Query: 42  VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +    A    D     +HG  GE G +Q++LEL  IPY   G  ASA S +K+ SK    
Sbjct: 66  LNSDKASYPIDFVVPCIHGFPGETGDIQSMLELAGIPYLGCGPEASANSFNKITSKLWYD 125

Query: 102 SCGVPVCPSILVNRFTMDSQHLISPPY------VIKPLKGGSSLGIIVIKKDQSIPLDLL 155
           +  +P  P + + + T  S       +       +K  + GSS+G   +  +  I   + 
Sbjct: 126 ALDIPNTPYLFLTQNTPSSIDKAKQAFGHWGSIFVKAARQGSSVGCYKVTTEDQIAPAI- 184

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYSSLN- 210
             +++   +Q+L+EQ V   EL       +  L ++   E+  P+  FYSYE KYS+ + 
Sbjct: 185 -EAAFGFSEQVLVEQAVKPRELEVSAYEMNGKLYISKPGEVIAPEGTFYSYEEKYSANSH 243

Query: 211 STHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
           +  VL A+ +     + +Q  A      +  R +SR DF       +++  E+N  PGMT
Sbjct: 244 ARTVLEAENLTEKHKELIQTYAERVFIHMKLRHLSRIDFFLT-QEGQIYLNEVNTFPGMT 302

Query: 270 PVSIFPEMAAYAGYSFRELLLWMV 293
           P+S+FP+M  + G+ F E L   V
Sbjct: 303 PISMFPKMLEHNGHRFSEFLAQCV 326


>gi|254285190|ref|ZP_04960156.1| D-alanine--D-alanine ligase [Vibrio cholerae AM-19226]
 gi|150425193|gb|EDN16970.1| D-alanine--D-alanine ligase [Vibrio cholerae AM-19226]
          Length = 334

 Score =  258 bits (661), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 91/324 (28%), Positives = 147/324 (45%), Gaps = 34/324 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDVDR------------------S 41
           + +L GG SSE E+SL S       LE    F V ++++ +                  +
Sbjct: 6   ILLLCGGGSSEHEISLVSANYIQQQLELTPEFHVIRVEMKKEGWFSEQGALVYLDTNSAT 65

Query: 42  VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +    A    D     +HG  GE G +Q++LEL  IPY   G  ASA S +K+ SK    
Sbjct: 66  LNSDKASYPIDFVVPCIHGFPGETGDIQSMLELAGIPYLGCGPEASANSFNKITSKLWYD 125

Query: 102 SCGVPVCPSILVNRFTMDSQHLISPPY------VIKPLKGGSSLGIIVIKKDQSIPLDLL 155
           +  +P  P + + + T  S       +       +K  + GSS+G   +  +  I   + 
Sbjct: 126 ALDIPNTPYLFLTQNTPSSIEKAKQAFGHWGSIFVKAARQGSSVGCYKVTTEDQIAPAI- 184

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYSSLN- 210
             +++   +Q+LIEQ V   EL       +  L ++   E+  P+  FYSYE KYS+ + 
Sbjct: 185 -EAAFGFSEQVLIEQAVKPRELEVSAYEMNGKLYISKPGEVIAPEGTFYSYEEKYSANSH 243

Query: 211 STHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
           +  VL A+ +     + +Q  A      +  R +SR DF       +++  E+N  PGMT
Sbjct: 244 ARTVLEAENLTEKHKELIQTYAERVFIHMKLRHLSRIDFFLT-QEGQIYLNEVNTFPGMT 302

Query: 270 PVSIFPEMAAYAGYSFRELLLWMV 293
           P+S+FP+M  + G+ F E L   V
Sbjct: 303 PISMFPKMLEHNGHRFSEFLAQCV 326


>gi|121725889|ref|ZP_01679189.1| D-alanine--D-alanine ligase [Vibrio cholerae V52]
 gi|121631654|gb|EAX64022.1| D-alanine--D-alanine ligase [Vibrio cholerae V52]
          Length = 334

 Score =  258 bits (660), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 90/324 (27%), Positives = 147/324 (45%), Gaps = 34/324 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDVDR------------------S 41
           + +L GG SSE E+SL S       LE    F V ++++ +                  +
Sbjct: 6   ILLLCGGGSSEHEISLVSANYIQQQLELTPEFHVIRVEMKKEGWFSEQGALVYLDTNSAT 65

Query: 42  VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +    A    D     +HG  GE G +Q++LEL  IPY   G  ASA S +K+ SK    
Sbjct: 66  LNSDKASYPIDFVVPCIHGFPGETGDIQSMLELAGIPYLGCGPEASANSFNKITSKLWYD 125

Query: 102 SCGVPVCPSILVNRFTMDSQHLISPPY------VIKPLKGGSSLGIIVIKKDQSIPLDLL 155
           +  +P  P + + + T  S       +       +K  + GSS+G   +  +  I   + 
Sbjct: 126 ALDIPNTPYLFLTQNTPSSIDKAKQAFGHWGSIFVKAARQGSSVGCYKVTTEDQIAPAI- 184

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYSSLN- 210
             +++   +Q+L+EQ V   EL       +  L ++   E+  P+  FYSYE KYS+ + 
Sbjct: 185 -EAAFGFSEQVLVEQAVKPRELEVSAYEMNGKLYISKPGEVIAPEGTFYSYEEKYSANSH 243

Query: 211 STHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
           +  VL A+ +     + +Q  A      +  R +SR DF       +++  E+N  PGMT
Sbjct: 244 ARTVLEAENLTEKHKELIQTYAERVFIHMKLRHLSRIDFFLT-QEGQIYLNEVNTFPGMT 302

Query: 270 PVSIFPEMAAYAGYSFRELLLWMV 293
           P+S+FP+M  + G+ F E L   V
Sbjct: 303 PISMFPKMLEHNGHRFSEFLAQCV 326


>gi|293191001|ref|ZP_06609045.1| D-alanine--D-alanine ligase B [Actinomyces odontolyticus F0309]
 gi|292820688|gb|EFF79654.1| D-alanine--D-alanine ligase B [Actinomyces odontolyticus F0309]
          Length = 342

 Score =  258 bits (660), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 87/307 (28%), Positives = 165/307 (53%), Gaps = 19/307 (6%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62
           ++ GG++ ER+VS+ SG+  A+ L   G+ V   DVD S+   ++   PD+ + ++HG+ 
Sbjct: 7   IIAGGLTHERDVSVRSGRRVANILTQFGYDVRISDVDASLADAISSFSPDVVWPLVHGSI 66

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-- 120
           GEDG +Q+ LE L IP+  S  + + L+ +K  +K ++ S G+     + + +       
Sbjct: 67  GEDGSLQSFLESLGIPFVGSSSVQAMLASNKPTAKALLGSAGLATPGWVTLPQAIFRQLG 126

Query: 121 --------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                   +  +S P VIKP  GGS+LGI   +  +++   ++   ++ +G +L++EQ +
Sbjct: 127 ASHVLSALEGSVSFPVVIKPTDGGSALGISTAQDAKALRRAMVD--AFAYGQRLMVEQRI 184

Query: 173 DGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           DG ++   V+    G  +L   E++      Y Y+ +Y++  + + +PA++  ++  ++Q
Sbjct: 185 DGRDVAVSVVDLWDGPVALPPVEVST-DRGRYDYDARYTTDETEYFVPARLSDELLADLQ 243

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYA-GYSFRE 287
             A  AH  +G R +SR DF+ D      ++++ NV PGMT  S+ P+ A      SF +
Sbjct: 244 AAAVEAHTTLGLRDLSRMDFVVD-DEGTCWFIDANVAPGMTDTSLLPQAADALEDSSFAQ 302

Query: 288 LLLWMVE 294
           L   +V+
Sbjct: 303 LCADIVD 309


>gi|289427317|ref|ZP_06429030.1| D-ala D-ala ligase N-terminal domain protein [Propionibacterium
           acnes J165]
 gi|289159247|gb|EFD07438.1| D-ala D-ala ligase N-terminal domain protein [Propionibacterium
           acnes J165]
 gi|313765048|gb|EFS36412.1| D-ala D-ala ligase [Propionibacterium acnes HL013PA1]
 gi|313792590|gb|EFS40676.1| D-ala D-ala ligase [Propionibacterium acnes HL110PA1]
 gi|313803591|gb|EFS44773.1| D-ala D-ala ligase [Propionibacterium acnes HL110PA2]
 gi|313806833|gb|EFS45331.1| D-ala D-ala ligase [Propionibacterium acnes HL087PA2]
 gi|313814241|gb|EFS51955.1| D-ala D-ala ligase [Propionibacterium acnes HL025PA1]
 gi|313815703|gb|EFS53417.1| D-ala D-ala ligase [Propionibacterium acnes HL059PA1]
 gi|313817621|gb|EFS55335.1| D-ala D-ala ligase [Propionibacterium acnes HL046PA2]
 gi|313821552|gb|EFS59266.1| D-ala D-ala ligase [Propionibacterium acnes HL036PA1]
 gi|313824504|gb|EFS62218.1| D-ala D-ala ligase [Propionibacterium acnes HL036PA2]
 gi|313826848|gb|EFS64562.1| D-ala D-ala ligase [Propionibacterium acnes HL063PA1]
 gi|313829166|gb|EFS66880.1| D-ala D-ala ligase [Propionibacterium acnes HL063PA2]
 gi|313839600|gb|EFS77314.1| D-ala D-ala ligase [Propionibacterium acnes HL086PA1]
 gi|314916192|gb|EFS80023.1| D-ala D-ala ligase [Propionibacterium acnes HL005PA4]
 gi|314917458|gb|EFS81289.1| D-ala D-ala ligase [Propionibacterium acnes HL050PA1]
 gi|314921795|gb|EFS85626.1| D-ala D-ala ligase [Propionibacterium acnes HL050PA3]
 gi|314926258|gb|EFS90089.1| D-ala D-ala ligase [Propionibacterium acnes HL036PA3]
 gi|314930938|gb|EFS94769.1| D-ala D-ala ligase [Propionibacterium acnes HL067PA1]
 gi|314955392|gb|EFS99797.1| D-ala D-ala ligase [Propionibacterium acnes HL027PA1]
 gi|314959137|gb|EFT03239.1| D-ala D-ala ligase [Propionibacterium acnes HL002PA1]
 gi|314961641|gb|EFT05742.1| D-ala D-ala ligase [Propionibacterium acnes HL002PA2]
 gi|314963897|gb|EFT07997.1| D-ala D-ala ligase [Propionibacterium acnes HL082PA1]
 gi|314969105|gb|EFT13203.1| D-ala D-ala ligase [Propionibacterium acnes HL037PA1]
 gi|314979943|gb|EFT24037.1| D-ala D-ala ligase [Propionibacterium acnes HL072PA2]
 gi|314990666|gb|EFT34757.1| D-ala D-ala ligase [Propionibacterium acnes HL005PA3]
 gi|315078970|gb|EFT50982.1| D-ala D-ala ligase [Propionibacterium acnes HL053PA2]
 gi|315081519|gb|EFT53495.1| D-ala D-ala ligase [Propionibacterium acnes HL078PA1]
 gi|315083057|gb|EFT55033.1| D-ala D-ala ligase [Propionibacterium acnes HL027PA2]
 gi|315086591|gb|EFT58567.1| D-ala D-ala ligase [Propionibacterium acnes HL002PA3]
 gi|315087994|gb|EFT59970.1| D-ala D-ala ligase [Propionibacterium acnes HL072PA1]
 gi|315099364|gb|EFT71340.1| D-ala D-ala ligase [Propionibacterium acnes HL059PA2]
 gi|315102294|gb|EFT74270.1| D-ala D-ala ligase [Propionibacterium acnes HL046PA1]
 gi|315107411|gb|EFT79387.1| D-ala D-ala ligase [Propionibacterium acnes HL030PA1]
 gi|315109706|gb|EFT81682.1| D-ala D-ala ligase [Propionibacterium acnes HL030PA2]
 gi|327444492|gb|EGE91146.1| D-ala D-ala ligase [Propionibacterium acnes HL013PA2]
 gi|327454233|gb|EGF00888.1| D-ala D-ala ligase [Propionibacterium acnes HL087PA3]
 gi|327456291|gb|EGF02946.1| D-ala D-ala ligase [Propionibacterium acnes HL083PA2]
 gi|327457435|gb|EGF04090.1| D-ala D-ala ligase [Propionibacterium acnes HL092PA1]
 gi|328757997|gb|EGF71613.1| D-ala D-ala ligase [Propionibacterium acnes HL020PA1]
 gi|328758953|gb|EGF72569.1| D-ala D-ala ligase [Propionibacterium acnes HL025PA2]
          Length = 315

 Score =  258 bits (660), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 86/309 (27%), Positives = 142/309 (45%), Gaps = 18/309 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VL GG+S +R++SL SG+  A AL   G +V + D+D ++   L      + F +LHG
Sbjct: 5   VVVLAGGLSHQRDISLKSGRTVAQALRRVGHEVVEADIDSALIETLRANDGAVVFPMLHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GE+G +  +L+L+ IPY  S      +S DK  + + V++ G+     + +       
Sbjct: 65  GLGENGALLEVLQLMGIPYVGSSPATCRISFDKSIASRAVAAAGIVTPQQVALPHDVFRE 124

Query: 121 ----------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                           P ++KP +GGSSLG+  +     +P  +    ++ + D +++E+
Sbjct: 125 LGAQTVMRSIAEKFGLPVIVKPARGGSSLGVTKVDGVDDLPQAVAN--AYAYDDMVVVEE 182

Query: 171 YVDGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE 226
           ++ G EL  G++    G   L   EI  P    Y Y   Y+   +    PA I     + 
Sbjct: 183 FIVGTELAIGMITTSEGTRVLPAVEIR-PVGGVYDYSAMYTGGETRLTAPADISDTAAQT 241

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
              +A +  + +   GISR D + D   R VF LE    PGMT  S+ P     AG    
Sbjct: 242 ATAMARVVQKELDFSGISRVDAIVDESGRPVF-LEAGAAPGMTATSLVPVAMKAAGLDLG 300

Query: 287 ELLLWMVED 295
           E+   +V+D
Sbjct: 301 EVCSRLVDD 309


>gi|328470679|gb|EGF41590.1| D-alanyl-alanine synthetase A [Vibrio parahaemolyticus 10329]
          Length = 329

 Score =  258 bits (660), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 83/327 (25%), Positives = 142/327 (43%), Gaps = 34/327 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDVDRSVGLVLA------------ 47
           + +L GG SSE E+SL S       L      KV+++++     +               
Sbjct: 5   ILLLCGGGSSEHEISLLSANFVEQQLNLIQNVKVTRVEIKNEGWVTDQGELVYLDLNTKK 64

Query: 48  ------HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
                 +   D     +HG  GE G +Q++ E+  IPY   G  AS+ S +K+ SK    
Sbjct: 65  LCSNEFNQTIDFIVPCIHGFPGETGDIQSLFEIAGIPYLGCGPEASSNSFNKITSKLWYD 124

Query: 102 SCGVPVCPSILVNRFTMDSQHLIS------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
           +  +P  P + + R    +               +K  + GSS+G   + + Q+I   + 
Sbjct: 125 ALDIPNTPYLFLTRNDEHAHRQAEQAFEKWGKVFVKAARQGSSVGCYSVAEKQAIAKAV- 183

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYSSLNS 211
            + ++ + DQ+L+E+ V   EL       +  L +T   E+  P   FYSY+ KYSS + 
Sbjct: 184 -NDAFGYSDQVLVEKAVKPRELEVAAYEMNGELHITKPGEVIAPDGAFYSYDEKYSSSSH 242

Query: 212 --THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
             T V    +  +   ++   +    + +  R +SR DF       +++  E+N  PGMT
Sbjct: 243 SLTEVEAKNLTQEQIDKIHHASETVFKQMNLRHLSRIDFFLTE-DNEIYLNEVNTFPGMT 301

Query: 270 PVSIFPEMAAYAGYSFRELLLWMVEDA 296
           P+S+FP+M    G+ F E L   +  A
Sbjct: 302 PISMFPKMLQNNGHKFHEFLEDCINSA 328


>gi|260773705|ref|ZP_05882620.1| D-alanine--D-alanine ligase [Vibrio metschnikovii CIP 69.14]
 gi|260610666|gb|EEX35870.1| D-alanine--D-alanine ligase [Vibrio metschnikovii CIP 69.14]
          Length = 334

 Score =  258 bits (660), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 90/327 (27%), Positives = 141/327 (43%), Gaps = 34/327 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASAL-EDAGFKVSQIDVDRSVGLVLAHL---------- 49
           + +L GG SSE E+SL S       L     F V ++++  +     +            
Sbjct: 6   ILLLCGGGSSEHEISLVSADYLQQQLTLTPSFDVIRVEMKPAGWFTESGDMVYLDTNSAS 65

Query: 50  --------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
                   + D     +HG  GE G +Q++LEL  IPY   G  AS+ S +K+ SK    
Sbjct: 66  LNSEHGSHRIDFVVPCIHGYPGETGDIQSMLELAGIPYLGCGPEASSNSFNKITSKLWYD 125

Query: 102 SCGVPVCPSILVNRFTMDSQHLIS------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
           + G+P  P + +     ++               IK  + GSS+G   +   Q I   + 
Sbjct: 126 ALGIPNTPYLFLTENNDEALCKAQQAFDKWGAVFIKAARQGSSVGCYKVTDKQQIAKAID 185

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYSSL-- 209
              ++   DQ+L+EQ V   EL          L +T   EI  P   FYSYE KYS+   
Sbjct: 186 D--AFTFSDQVLVEQAVKPRELEVAAYELGGKLHITQPGEIIAPDDAFYSYEEKYSANSH 243

Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
           + T V    I  +    ++R A      +  R ++R DF       +++  E+N  PGMT
Sbjct: 244 SMTKVTADNITAEQRDLIKRYAEKVFVHMKLRHLARIDFFLTSQ-GEIYLNEVNTFPGMT 302

Query: 270 PVSIFPEMAAYAGYSFRELLLWMVEDA 296
           P+S+FP+M  + G+SF   L   V+ +
Sbjct: 303 PISMFPKMLEHHGHSFSVFLADCVQRS 329


>gi|241894960|ref|ZP_04782256.1| D-alanine--D-alanine ligase [Weissella paramesenteroides ATCC
           33313]
 gi|241871678|gb|EER75429.1| D-alanine--D-alanine ligase [Weissella paramesenteroides ATCC
           33313]
          Length = 382

 Score =  258 bits (660), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 83/343 (24%), Positives = 154/343 (44%), Gaps = 53/343 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           +A+L GG SSE +VS  S      A++   + V+   + +   ++ A             
Sbjct: 7   IAMLFGGNSSEHDVSKRSAHNIYDAMDKEKYNVTVFLISKDGIMINAEDSWRVFEGEDED 66

Query: 49  -------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                       D  + V+HGN GEDG +QA+  LL+ PY   G
Sbjct: 67  EIVAAAKEKMDLSNPLAPIAVLGEMANIDFFYPVVHGNLGEDGTLQALFRLLKKPYLGPG 126

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNR-------FTMDSQHLISPPYVIKPLKGG 136
           I ASA+S DK  +K++++  GV     +L+         +    + L S    +K    G
Sbjct: 127 IAASAMSFDKDLTKRILNQAGVRNTNYVLLTDQNYQDYTYDELVKELDSEVLFVKAASQG 186

Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTE---I 192
           SS+G+  +  +      L  S  +++  ++L+E  +D   E+   ++G+ +   +    I
Sbjct: 187 SSVGVSRVTNEDEYKAALKDSFQYDY--KILVEGALDKPREVFISILGNENPRASRLGGI 244

Query: 193 AVPKSD-FYSYELKYSSLNS-THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
            +P+ D +Y Y  K+   +     LP ++   +  E+  +A  A++A+G  G++R DF+ 
Sbjct: 245 VLPEEDVWYDYNNKFVDASGMVFELPVELDQALTDEITDMALRAYKALGLVGLTRMDFMI 304

Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           D  +   +  E N  PG T +S++P+M   +G S+  L+  ++
Sbjct: 305 DK-NGVPYLGEPNTLPGFTNISLYPQMWEVSGISYTHLIDELI 346


>gi|15601331|ref|NP_232962.1| D-alanyl-alanine synthetase A [Vibrio cholerae O1 biovar eltor str.
           N16961]
 gi|153823278|ref|ZP_01975945.1| D-alanine--D-alanine ligase [Vibrio cholerae B33]
 gi|227812140|ref|YP_002812150.1| D-alanine--D-alanine ligase [Vibrio cholerae M66-2]
 gi|229506258|ref|ZP_04395767.1| D-alanine--D-alanine ligase [Vibrio cholerae BX 330286]
 gi|229509883|ref|ZP_04399363.1| D-alanine--D-alanine ligase [Vibrio cholerae B33]
 gi|229605798|ref|YP_002876502.1| D-alanyl-alanine synthetase A [Vibrio cholerae MJ-1236]
 gi|254849732|ref|ZP_05239082.1| D-alanyl-alanine synthetase A [Vibrio cholerae MO10]
 gi|255746651|ref|ZP_05420598.1| D-alanine--D-alanine ligase [Vibrio cholera CIRS 101]
 gi|298499384|ref|ZP_07009190.1| D-alanine-D-alanine ligase [Vibrio cholerae MAK 757]
 gi|22095568|sp|Q9KM17|DDL_VIBCH RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|254767746|sp|C3LVI8|DDL_VIBCM RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|9657982|gb|AAF96474.1| D-alanine--D-alanine ligase [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|126519203|gb|EAZ76426.1| D-alanine--D-alanine ligase [Vibrio cholerae B33]
 gi|227011282|gb|ACP07493.1| D-alanine--D-alanine ligase [Vibrio cholerae M66-2]
 gi|229352328|gb|EEO17268.1| D-alanine--D-alanine ligase [Vibrio cholerae B33]
 gi|229356609|gb|EEO21527.1| D-alanine--D-alanine ligase [Vibrio cholerae BX 330286]
 gi|229372284|gb|ACQ62706.1| D-alanine--D-alanine ligase [Vibrio cholerae MJ-1236]
 gi|254845437|gb|EET23851.1| D-alanyl-alanine synthetase A [Vibrio cholerae MO10]
 gi|255736405|gb|EET91803.1| D-alanine--D-alanine ligase [Vibrio cholera CIRS 101]
 gi|297541365|gb|EFH77416.1| D-alanine-D-alanine ligase [Vibrio cholerae MAK 757]
          Length = 334

 Score =  258 bits (660), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 90/324 (27%), Positives = 148/324 (45%), Gaps = 34/324 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDVDR------------------S 41
           + +L GG SSE E+SL S       LE    F V ++++ +                  +
Sbjct: 6   ILLLCGGGSSEHEISLVSANYIQQQLELTPEFHVIRVEMKKEGWFSEQGALVYLDTNSAT 65

Query: 42  VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +    A    D     +HG  GE G +Q++LEL  IPY   G  ASA S +K+ SK    
Sbjct: 66  LNSDKASYPIDFVVPCIHGFPGETGDIQSMLELAGIPYLGCGPEASANSFNKITSKLWYD 125

Query: 102 SCGVPVCPSILVNRFTMDSQHLISPPY------VIKPLKGGSSLGIIVIKKDQSIPLDLL 155
           +  +P  P + + + T  S       +       +K  + GSS+G   +  +  I   + 
Sbjct: 126 ALDIPNTPYLFLTQNTPSSIDKAKQAFGHWGSIFVKAARQGSSVGCYKVTTEDQIAPAI- 184

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYSSLN- 210
             +++   +Q+L+EQ V   EL       +  L ++   E+  P+  FYSYE KYS+ + 
Sbjct: 185 -EAAFGFSEQVLVEQAVKPRELEVSAYEMNGKLYISKPGEVIAPEGTFYSYEEKYSANSH 243

Query: 211 STHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
           +  VL A+ +     + +Q  A      +  R +SR DF       +++  E+N  PGMT
Sbjct: 244 ARTVLEAENLTEKHKELIQTYAERVFIHMKLRHLSRIDFFLT-QEGQIYLNEVNTFPGMT 302

Query: 270 PVSIFPEMAAYAGYSFRELLLWMV 293
           P+S+FP+M  + G+ F E L+  V
Sbjct: 303 PISMFPKMLEHNGHRFSEFLVQCV 326


>gi|327334103|gb|EGE75818.1| D-alanine--D-alanine ligase B [Propionibacterium acnes HL096PA3]
          Length = 315

 Score =  258 bits (660), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 86/309 (27%), Positives = 142/309 (45%), Gaps = 18/309 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VL GG+S +R++SL SG+  A AL   G +V + D+D ++   L      + F +LHG
Sbjct: 5   VVVLAGGLSHQRDISLKSGRTVAQALRRVGHEVVEADIDSALIETLRANDGAVVFPMLHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GE+G +  +L+L+ IPY  S      +S DK  + + V++ G+     + +       
Sbjct: 65  GLGENGALLEVLQLMGIPYVGSSPAPCRISFDKSIASRAVAAAGIVTPQQVALPHDVFRE 124

Query: 121 ----------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                           P ++KP +GGSSLG+  +     +P  +    ++ + D +++E+
Sbjct: 125 LGAQTVMRSIAEKFGLPVIVKPARGGSSLGVTKVDGVDDLPQAVAN--AYAYDDMVVVEE 182

Query: 171 YVDGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE 226
           ++ G EL  G++    G   L   EI  P    Y Y   Y+   +    PA I     + 
Sbjct: 183 FIVGTELAIGMITTSEGTRVLPAVEIR-PVGGVYDYSAMYTGGETRLTAPADISDTAAQT 241

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
              +A +  + +   GISR D + D   R VF LE    PGMT  S+ P     AG    
Sbjct: 242 ATAMARVVQKELDFSGISRVDAIVDESGRPVF-LEAGAAPGMTATSLVPVAMKAAGLDLG 300

Query: 287 ELLLWMVED 295
           E+   +V+D
Sbjct: 301 EVCSRLVDD 309


>gi|313898581|ref|ZP_07832116.1| D-ala D-ala ligase N-terminal domain protein [Clostridium sp. HGF2]
 gi|312956465|gb|EFR38098.1| D-ala D-ala ligase N-terminal domain protein [Clostridium sp. HGF2]
          Length = 384

 Score =  258 bits (660), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 89/356 (25%), Positives = 150/356 (42%), Gaps = 66/356 (18%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVG----------------- 43
           +AV  GG S E E+S+ S +   +AL++  +++  + + +                    
Sbjct: 5   IAVAFGGRSVEHEISVLSAQQVMAALDEERYEILPLYIAKDGRMFCEEELRELETFQHIE 64

Query: 44  --------------------------LVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEI 77
                                     L     + DL F VLHG  GEDG  Q  L+ + I
Sbjct: 65  EFIADHTSVALIRRDAHTYLIPSRRKLFARDKEVDLVFPVLHGTNGEDGTFQGYLKTIGI 124

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIK 131
           PY    +LA A+  DK+  KQV+   G+ V P         + +        +  P +IK
Sbjct: 125 PYVGCSVLAGAIGQDKVIMKQVLQDSGLSVVPWFFWTLHQPMEQSFFKKAQRLGYPLIIK 184

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASL--- 187
           P   GSS+GI V   D  +   ++++  ++H  +++IE+ ++   E+   V+GD      
Sbjct: 185 PANLGSSVGIAVAHNDVELHKSMIEAFQYDH--KVVIEKVIEPLREINASVLGDEDGCRC 242

Query: 188 DVTEIAVPKSDFYSYELKY-------SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
              E  V + +  SY+ KY         L+++  LPA++  +  +EV+ +A  A +A+  
Sbjct: 243 STLEEVVKQDEILSYDNKYSGQGKSKGMLSTSRKLPAELSDEQAEEVRTMAMDAFRALNA 302

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            G+ R DFL    S  ++  EIN  PG     +        G SF  LL  ++  A
Sbjct: 303 AGVVRIDFLMHADSSALYVNEINTIPGSLSFYL----WEKEGLSFPALLDELISLA 354


>gi|154508227|ref|ZP_02043869.1| hypothetical protein ACTODO_00721 [Actinomyces odontolyticus ATCC
           17982]
 gi|153797861|gb|EDN80281.1| hypothetical protein ACTODO_00721 [Actinomyces odontolyticus ATCC
           17982]
          Length = 342

 Score =  258 bits (660), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 87/307 (28%), Positives = 165/307 (53%), Gaps = 19/307 (6%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62
           ++ GG++ ER+VS+ SG+  A+ L   G+ V   DVD S+   ++   PD+ + ++HG+ 
Sbjct: 7   IIAGGLTHERDVSVRSGRRVANILTQFGYDVRISDVDASLAEAISSFSPDVVWPLVHGSI 66

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-- 120
           GEDG +Q+ LE L IP+  S  + + L+ +K  +K ++ S G+     + + +       
Sbjct: 67  GEDGSLQSFLESLGIPFVGSSSVQAMLASNKPTAKALLGSAGLATPGWVTLPQAIFRQLG 126

Query: 121 --------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                   +  +S P VIKP  GGS+LGI   +  +++   ++ + +  +G +L++EQ +
Sbjct: 127 ASHVLSALEGSVSFPVVIKPTDGGSALGISTAQDAKALRRAMVDAFA--YGQRLMVEQRI 184

Query: 173 DGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           DG ++   V+    G  +L   E++      Y Y+ +Y++  + + +PA++  ++  ++Q
Sbjct: 185 DGRDVAVSVVDLWDGPVALPPVEVST-DRGRYDYDARYTTDETEYFVPARLSDELLADLQ 243

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYA-GYSFRE 287
             A  AH  +G R +SR DF+ D      ++++ NV PGMT  S+ P+ A      SF +
Sbjct: 244 AAAVEAHTTLGLRDLSRMDFVVD-DEGTCWFIDANVAPGMTDTSLLPQAADALEDSSFAQ 302

Query: 288 LLLWMVE 294
           L   +V+
Sbjct: 303 LCADIVD 309


>gi|295131866|ref|YP_003582529.1| D-ala D-ala ligase N-terminal domain protein [Propionibacterium
           acnes SK137]
 gi|291376332|gb|ADE00187.1| D-ala D-ala ligase N-terminal domain protein [Propionibacterium
           acnes SK137]
 gi|313771089|gb|EFS37055.1| D-ala D-ala ligase [Propionibacterium acnes HL074PA1]
 gi|313811746|gb|EFS49460.1| D-ala D-ala ligase [Propionibacterium acnes HL083PA1]
 gi|313832280|gb|EFS69994.1| D-ala D-ala ligase [Propionibacterium acnes HL007PA1]
 gi|313832740|gb|EFS70454.1| D-ala D-ala ligase [Propionibacterium acnes HL056PA1]
 gi|314975178|gb|EFT19273.1| D-ala D-ala ligase [Propionibacterium acnes HL053PA1]
 gi|314977587|gb|EFT21682.1| D-ala D-ala ligase [Propionibacterium acnes HL045PA1]
 gi|314985065|gb|EFT29157.1| D-ala D-ala ligase [Propionibacterium acnes HL005PA1]
 gi|315096927|gb|EFT68903.1| D-ala D-ala ligase [Propionibacterium acnes HL038PA1]
 gi|327332479|gb|EGE74214.1| D-alanine--D-alanine ligase B [Propionibacterium acnes HL096PA2]
 gi|327446745|gb|EGE93399.1| D-ala D-ala ligase [Propionibacterium acnes HL043PA2]
 gi|327448814|gb|EGE95468.1| D-ala D-ala ligase [Propionibacterium acnes HL043PA1]
 gi|328759876|gb|EGF73466.1| D-alanine--D-alanine ligase B [Propionibacterium acnes HL099PA1]
          Length = 315

 Score =  258 bits (659), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 86/309 (27%), Positives = 141/309 (45%), Gaps = 18/309 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VL GG+S +R++SL SG+  A AL   G +V + D+D ++   L      + F +LHG
Sbjct: 5   VVVLAGGLSHQRDISLKSGRTVAQALRRVGHEVVEADIDSALIETLRANDGAVVFPMLHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GE+G +  +L+L+ IPY  S      +S DK  +   V++ G+     + +       
Sbjct: 65  GLGENGALLEVLQLMGIPYVGSSPATCRISFDKSIASHAVAAAGIVTPQQVALPHDVFRE 124

Query: 121 ----------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                           P ++KP +GGSSLG+  +     +P  +    ++ + D +++E+
Sbjct: 125 LGAQTVMRSIAEKFGLPVIVKPARGGSSLGVTKVDGVDDLPQAVAN--AYAYDDMVVVEE 182

Query: 171 YVDGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE 226
           ++ G EL  G++    G   L   EI  P    Y Y   Y+   +    PA I     + 
Sbjct: 183 FIVGTELAIGMITTSEGTRVLPAVEIR-PVGGVYDYSAMYTGGETRLTAPADISDTAAQT 241

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
              +A +  + +   GISR D + D   R VF LE    PGMT  S+ P     AG    
Sbjct: 242 ATAMARVVQKELDFSGISRVDAIVDESGRPVF-LEAGAAPGMTATSLVPVAMKAAGLDLG 300

Query: 287 ELLLWMVED 295
           E+   +V+D
Sbjct: 301 EVCSRLVDD 309


>gi|262395454|ref|YP_003287307.1| D-alanine--D-alanine ligase [Vibrio sp. Ex25]
 gi|262339048|gb|ACY52842.1| D-alanine--D-alanine ligase [Vibrio sp. Ex25]
          Length = 329

 Score =  258 bits (659), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 82/327 (25%), Positives = 141/327 (43%), Gaps = 34/327 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDVD------------------RS 41
           + +L GG SSE E+SL S       L       V+++++                   + 
Sbjct: 5   ILLLCGGGSSEHEISLLSANFVEQQLNLIEDVHVTRVEIKNEGWMTNQGELVYLDLNTKQ 64

Query: 42  VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +    ++   D     +HG  GE G +Q++ E+  IPY   G  AS+ S +K+ SK    
Sbjct: 65  LCSSESNQTIDFIVPCIHGFPGETGDIQSLFEIAGIPYLGCGPEASSNSFNKITSKLWYD 124

Query: 102 SCGVPVCPSILVNRFTMDSQHLIS------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
           + G+P  P + + R   ++               +K  + GSS+G   + +   +   + 
Sbjct: 125 AIGIPNTPYLFLTRNDEEAHTQAHKAFEKWGKVFVKAARQGSSVGCYSVTEKDKLSNAV- 183

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYSSLNS 211
            + ++   DQ+L+E+ V   EL       +  L +T   E+  P   FYSY+ KYSS + 
Sbjct: 184 -NDAFGFSDQVLVEKSVKPRELEVAAYEMNGQLHITKPGEVIAPDGAFYSYDEKYSSSSH 242

Query: 212 --THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
             T V    +       +Q  +    + +  R +SR DF       +++  E+N  PGMT
Sbjct: 243 SLTEVEAKNLTQAQLDAIQHASERVFKQMNLRHLSRIDFFLTE-DDEIYLNEVNTFPGMT 301

Query: 270 PVSIFPEMAAYAGYSFRELLLWMVEDA 296
           P+S+FP+M    G+ F E L   +  A
Sbjct: 302 PISMFPKMLQNNGHKFHEFLEDCINSA 328


>gi|317130028|ref|YP_004096310.1| D-alanine/D-alanine ligase [Bacillus cellulosilyticus DSM 2522]
 gi|315474976|gb|ADU31579.1| D-alanine/D-alanine ligase [Bacillus cellulosilyticus DSM 2522]
          Length = 404

 Score =  258 bits (659), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 93/367 (25%), Positives = 158/367 (43%), Gaps = 77/367 (20%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44
           +AV+ GG+S E EVS+ S       ++++ +++  + + +                    
Sbjct: 12  VAVIFGGMSVEHEVSVISALQAIQNMDESRYEIIPVYISKEGAWYTGDTLLDIEEYKNLK 71

Query: 45  -VLAHLK-----------------------------PDLAFNVLHGNFGEDGLVQAILEL 74
            +LA  +                              D+AF ++HG F EDG++Q  LEL
Sbjct: 72  GLLAKSQRIQLLREGDNRVIINKEPKPKFGKAYINEIDVAFPIVHGTFAEDGVLQGYLEL 131

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTMDSQHLIS------- 125
           L +PY    +++S+  MDK+  K V    G+P+   +     ++  D   L+        
Sbjct: 132 LGLPYVGCDVVSSSTGMDKVIMKNVYRDSGLPILDYVWFYSTKWNEDQDELVKKVEGKLQ 191

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGD 184
            P ++KP   GSS+GI        +   +  +S +   ++++IE+ V    E+ C V+GD
Sbjct: 192 YPVIVKPANLGSSVGISKAANVDELEEAVELASQFA--NKIVIEKMVQNMTEINCSVLGD 249

Query: 185 ---ASLDVTEIAVPKSDFYSYELKYS------------SLNSTHVLPAKIPLDIYKEVQR 229
              A   V E  +   +  SYE KY+              ++  ++PA I  +  KE+Q 
Sbjct: 250 YEAAEASVCEQVLGNDEILSYEDKYAGGGSKGGGASKGMESTNRIIPADISEEKTKEIQE 309

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           LA  A Q +GC G+SR DFL D  +  VF  EIN  PG     +        G  ++EL 
Sbjct: 310 LAVAAFQVLGCSGVSRIDFLIDNDTNNVFINEINTIPGSLSFYL----WEPTGKPYKELT 365

Query: 290 LWMVEDA 296
             +++ A
Sbjct: 366 NDLIQLA 372


>gi|262164168|ref|ZP_06031906.1| D-alanine--D-alanine ligase [Vibrio mimicus VM223]
 gi|262026548|gb|EEY45215.1| D-alanine--D-alanine ligase [Vibrio mimicus VM223]
          Length = 334

 Score =  257 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 89/324 (27%), Positives = 145/324 (44%), Gaps = 34/324 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDVDRSVGLVLAHL---------- 49
           + +L GG SSE E+SL S       LE    F V ++++ +                   
Sbjct: 6   ILLLCGGGSSEHEISLVSANYIQQQLELTPEFNVVRVEMKKEGWFSKHGELVYLDTNSAT 65

Query: 50  --------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
                     D     +HG  GE G +Q++LEL  IPY   G  ASA S +K+ SK    
Sbjct: 66  LNGDNISYPIDFVVPCIHGFPGETGDIQSMLELAGIPYLGCGPEASANSFNKITSKLWYD 125

Query: 102 SCGVPVCPSILVNRFTMDSQHLISPPY------VIKPLKGGSSLGIIVIKKDQSIPLDLL 155
           + G+P  P + + + T DS       +       +K  + GSS+G   +  ++ I     
Sbjct: 126 ALGIPNTPYLFLTQNTSDSVEKARQAFRNWGSIFVKAARQGSSVGCYKVTNEEQIAA--A 183

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKY--SSL 209
             +++   +Q+L+E+ V   EL       +  L ++   EI  P+  FYSYE KY  +S 
Sbjct: 184 IEAAFGFSEQVLVEKAVKPRELEVAAYEMNGKLFISKPGEIIAPEDAFYSYEEKYSATSH 243

Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
           + T +    +  +  + +Q+ A      +  R +SR DF       +++  E+N  PGMT
Sbjct: 244 SRTLIEAENLTDEQRELIQQSAERVFVHMKLRHLSRIDFFLT-QDGQIYLNEVNTFPGMT 302

Query: 270 PVSIFPEMAAYAGYSFRELLLWMV 293
           P+S+FP+M  + G+ F E L   V
Sbjct: 303 PISMFPKMLEHNGHRFSEFLAQCV 326


>gi|262173765|ref|ZP_06041442.1| D-alanine--D-alanine ligase [Vibrio mimicus MB-451]
 gi|261891123|gb|EEY37110.1| D-alanine--D-alanine ligase [Vibrio mimicus MB-451]
          Length = 334

 Score =  257 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 89/324 (27%), Positives = 144/324 (44%), Gaps = 34/324 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDVDRSVGLVLAHL---------- 49
           + +L GG SSE E+SL S       LE    F V ++++ +                   
Sbjct: 6   ILLLCGGGSSEHEISLVSANYIQQQLELTPEFNVVRVEMKKEGWFSKHGELVYLDTNSAT 65

Query: 50  --------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
                     D     +HG  GE G +Q++LEL  IPY   G  ASA S +K+ SK    
Sbjct: 66  LNGDNISYPIDFVVPCIHGFPGETGDIQSMLELAGIPYLGCGPEASANSFNKITSKLWYD 125

Query: 102 SCGVPVCPSILVNRFTMDSQHLISPPY------VIKPLKGGSSLGIIVIKKDQSIPLDLL 155
           + G+P  P + + + T DS       +       +K  + GSS+G   +  ++ I     
Sbjct: 126 ALGIPNTPYLFLTQNTSDSVEKARQAFRNWGSIFVKAARQGSSVGCYKVTNEEQIAA--A 183

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKY--SSL 209
             +++   +Q+L+E+ V   EL       +  L ++   EI  P+  FYSYE KY  +S 
Sbjct: 184 IEAAFGFSEQVLVEKAVKPRELEVAAYEMNGKLFISKPGEIIAPEDAFYSYEEKYSATSH 243

Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
           + T +    +  +  + +Q+ A      +  R +SR DF        ++  E+N  PGMT
Sbjct: 244 SRTLIEAENLTDEQRELIQQSAERVFVHMKLRHLSRIDFFLT-QDGHIYLNEVNTFPGMT 302

Query: 270 PVSIFPEMAAYAGYSFRELLLWMV 293
           P+S+FP+M  + G+ F E L   V
Sbjct: 303 PISMFPKMLEHNGHRFSEFLAQCV 326


>gi|260770475|ref|ZP_05879408.1| D-alanine--D-alanine ligase [Vibrio furnissii CIP 102972]
 gi|260615813|gb|EEX40999.1| D-alanine--D-alanine ligase [Vibrio furnissii CIP 102972]
          Length = 334

 Score =  257 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 96/332 (28%), Positives = 148/332 (44%), Gaps = 42/332 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDVDRSVGLVLA------------ 47
           + +L GG SSE EVSL S       L     F V ++++ +                   
Sbjct: 6   ILLLCGGGSSEHEVSLVSANYLQQQLSLTPDFDVVRVEMKKEGWFSDTGEIVYLDTNSAT 65

Query: 48  ------HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
                  LK D     +HG  GE G +Q++ EL  IPY   G  AS+ S +K+ SK    
Sbjct: 66  LNGEGLSLKIDFVIPCIHGYPGETGDIQSMFELAGIPYLGCGPEASSNSFNKITSKLWYD 125

Query: 102 SCGVPVCPSILVN-------RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154
           + G+P  P + ++       + T D+         IK  + GSS+G   + K     +  
Sbjct: 126 ALGIPNTPYLFLSENNAQALKNTQDAFAKWGS-LFIKAARQGSSVGCYKVTK--EDQIAA 182

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYSSLN 210
              +++++ +Q+L+EQ V   EL       +  L +T   EI  P+  FYSYE KYS+ +
Sbjct: 183 AIDAAFSYSEQVLVEQAVKPRELEVAAYEMNGELFITKPGEIIAPEDAFYSYEEKYSTDS 242

Query: 211 --STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268
              T V    +  +    + ++A      +  R +SR DF   P    V+  E+N  PGM
Sbjct: 243 HSRTEVEAGNLTDEQQALIHQVAQKVFTHMKLRHLSRIDFFLTP-EGHVYLNEVNTFPGM 301

Query: 269 TPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           TP+S+FP+M A  G+ F E L      A C+R
Sbjct: 302 TPISMFPKMLANNGHQFDEFL------ADCVR 327


>gi|171316210|ref|ZP_02905433.1| D-alanine/D-alanine ligase [Burkholderia ambifaria MEX-5]
 gi|171098624|gb|EDT43421.1| D-alanine/D-alanine ligase [Burkholderia ambifaria MEX-5]
          Length = 275

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 86/254 (33%), Positives = 129/254 (50%), Gaps = 11/254 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL+SG+     L DAG      D        L       AFN LHG
Sbjct: 12  VAVLFGGESAEREVSLTSGRLVLQGLRDAGIDAHPFDPAERPLSALKDEGFVRAFNALHG 71

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118
            +GE+G +Q  L+   I YT SG+L SAL +DK R+K V    GVP  P   V R     
Sbjct: 72  GYGENGQIQGALDFYGIRYTGSGVLGSALGLDKFRTKLVWQQTGVPTPPFETVMRGDDYA 131

Query: 119 ----DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD- 173
               D    +  P  +KP   GSS+ ++ +K   ++P  L +++   H   +++E+ ++ 
Sbjct: 132 ARATDIVAKLGLPLFVKPASEGSSVAVLKVKTADALPAALSEAA--THDKIVIVEKSIEG 189

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           G E T  + GD  L + +I VP  +FY Y  KY + ++ +++P  +P     E++R+A  
Sbjct: 190 GGEYTACIAGDLDLPLIKI-VPAGEFYDYHAKYVADDTQYLIPCGLPAQQEAELKRIARR 248

Query: 234 AHQAIGCRGIS-RS 246
           A   +GC     R 
Sbjct: 249 AFDVLGCTDWGERI 262


>gi|289424720|ref|ZP_06426503.1| D-ala D-ala ligase N-terminal domain protein [Propionibacterium
           acnes SK187]
 gi|289155417|gb|EFD04099.1| D-ala D-ala ligase N-terminal domain protein [Propionibacterium
           acnes SK187]
          Length = 315

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 86/309 (27%), Positives = 142/309 (45%), Gaps = 18/309 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VL GG+S +R++SL SG+  A AL   G +V + D+D ++   L      + F +LHG
Sbjct: 5   VVVLAGGLSHQRDISLKSGRTVAQALRRVGHEVVEADIDSALIETLRANDGAVVFPMLHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GE+G +  +L+L+ IPY  S      +S DK  + + V++ G+     + +       
Sbjct: 65  GLGENGALLEVLQLMGIPYVGSSPATCRISFDKSIASRAVAAAGIVTPQQVALPHDVFRE 124

Query: 121 ----------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                           P ++KP +GGSSLG+  +     +P  +    ++ + D +++E+
Sbjct: 125 LGAQTVMRSIAEKFGLPVIVKPARGGSSLGVTKVDGVDDLPQAVAN--AYAYDDMVVVEE 182

Query: 171 YVDGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE 226
           ++ G EL  G++    G   L   EI  P    Y Y   Y+   +    PA I     + 
Sbjct: 183 FIVGTELAIGMITTSEGTRVLPAVEIR-PVGGVYDYSAMYTGGETRLTAPAGISDTAAQT 241

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
              +A +  + +   GISR D + D   R VF LE    PGMT  S+ P     AG    
Sbjct: 242 ATAMARVVQKELDFSGISRVDAIVDESGRPVF-LEAGAAPGMTATSLVPVAMKAAGLDLG 300

Query: 287 ELLLWMVED 295
           E+   +V+D
Sbjct: 301 EVCSRLVDD 309


>gi|87125524|ref|ZP_01081369.1| D-alanine--D-alanine ligase [Synechococcus sp. RS9917]
 gi|86166824|gb|EAQ68086.1| D-alanine--D-alanine ligase [Synechococcus sp. RS9917]
          Length = 344

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 86/343 (25%), Positives = 151/343 (44%), Gaps = 52/343 (15%)

Query: 4   LMGGISSEREVSLSSGKACASALE----DAGFKVSQIDVDRSVGLV------------LA 47
           + GG S E  +++ S      AL        F V    +DR+                +A
Sbjct: 2   VFGGASGEHTIAIRSATTVIQALRSGRNRERFDVVPFYIDRAGRWWPAVVAESVLQNGVA 61

Query: 48  HLKPD---------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
             + D                     + + VLHG  GEDG VQ +  L+  P+  +G+L 
Sbjct: 62  AEEADLPQPLPAPGFSQLPAGSETVEIWYPVLHGPNGEDGTVQGLFTLMAKPFVGAGVLG 121

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-----------QHLISPPYVIKPLKG 135
           SA+ MDK+  K   ++ G+     + ++  ++++           +  +  P  +KP   
Sbjct: 122 SAMGMDKLAMKAAFAAAGLAQVAYVGLDASSLNNAATRATLLERIETELGYPCFVKPANL 181

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195
           GSS+GI  ++    +   L  ++  +H  +L++EQ V   EL C V+G   L  + +   
Sbjct: 182 GSSVGISKVRNRAELERGLAVAAELDH--RLVVEQGVQARELECAVLGVRQLKASVVGEI 239

Query: 196 --KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
              +D+Y Y+ KYS   S  ++PA I      +VQ +A  A + +G  G +R DF +D  
Sbjct: 240 RFDADWYDYKTKYSDGLSHTLIPAPISAARQADVQAMALEACRVLGVVGQARVDFFYDAT 299

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             +++  E+N  PG T  S++P +   +G    +L+  +VE A
Sbjct: 300 QERLWINEVNTLPGFTSQSMYPMLWEASGLPLEDLVAQLVESA 342


>gi|332638511|ref|ZP_08417374.1| D-alanyl-alanine synthetase A [Weissella cibaria KACC 11862]
          Length = 382

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 81/343 (23%), Positives = 153/343 (44%), Gaps = 53/343 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           +A+  GG SSE +VS  S +    A++   + V+   + +   ++ A             
Sbjct: 7   IAMFFGGNSSEHDVSKRSARNIYDAMDKEKYNVTVFLISKDGIMINAADSKRVFDGEDED 66

Query: 50  --------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                     + DL + V+HGN GEDG +QA+  LL+ PY   G
Sbjct: 67  TIVAEAKSKMDLKNPLAPIAVLGEMSEIDLFYPVVHGNLGEDGTLQALFRLLQKPYIGPG 126

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-------QHLISPPYVIKPLKGG 136
             ASA+S DK  +K++++  G+     +L+              + L +    +K  K G
Sbjct: 127 TAASAMSFDKDLTKRILNQAGIRNTKYVLLTDQNFQDYTYEGLVKELGTEVLFVKAAKQG 186

Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTE---I 192
           SS+GI  +         +  +  +++  ++L+E  +    E+   ++G+     +    I
Sbjct: 187 SSVGISRVTNAAEFEAGVKDALQYDY--KVLVEAALTKPREVFISILGNEQPRASRLGGI 244

Query: 193 AVPKSD-FYSYELKYSSLNS-THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
            +P+ D +Y Y  K+   +     LP ++  D+ KE+  +A  A++A+G  G++R DF+ 
Sbjct: 245 VLPEQDVWYDYNNKFVDASGMVFELPVELGDDLEKEITDMALNAYKALGLVGLTRMDFMI 304

Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           D      +  E N  PG T +S++P+M   +G S+  L+  ++
Sbjct: 305 DA-DGTPYLGEPNTLPGFTNISLYPQMWEVSGISYTNLIDEII 346


>gi|258626983|ref|ZP_05721782.1| D-alanine--D-alanine ligase [Vibrio mimicus VM603]
 gi|258580736|gb|EEW05686.1| D-alanine--D-alanine ligase [Vibrio mimicus VM603]
          Length = 334

 Score =  256 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 89/324 (27%), Positives = 144/324 (44%), Gaps = 34/324 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDVDRSVGLVLAHL---------- 49
           + +L GG SSE E+SL S       LE    F V ++++ +                   
Sbjct: 6   ILLLCGGGSSEHEISLVSANYIQQQLELTPEFNVVRVEMKKEGWFSKHGELVYLDTNSAT 65

Query: 50  --------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
                     D     +HG  GE G +Q++LEL  IPY   G  ASA S +K+ SK    
Sbjct: 66  LNGDNISYPIDFVVPCIHGFPGETGDIQSMLELAGIPYLGCGPEASANSFNKITSKLWYD 125

Query: 102 SCGVPVCPSILVNRFTMDSQHLISPPY------VIKPLKGGSSLGIIVIKKDQSIPLDLL 155
           + G+P  P + + + T DS       +       +K  + GSS+G   +  ++ I     
Sbjct: 126 ALGIPNTPYLFLTQNTSDSVEKARQAFRNWGSIFVKAARQGSSVGCYKVTSEEQIAA--A 183

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKY--SSL 209
             +++   +Q+L+E+ V   EL       +  L ++   EI  P+  FYSYE KY  +S 
Sbjct: 184 IEAAFGFSEQVLVEKAVKPRELEVAAYEMNGKLFISKPGEIIAPEDAFYSYEEKYSATSH 243

Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
           + T +    +  +  + +Q+ A      +  R +SR DF        ++  E+N  PGMT
Sbjct: 244 SRTLIEAENLTDEQRELIQQSAERVFVHMKLRHLSRIDFFLT-QDGHIYLNEVNTFPGMT 302

Query: 270 PVSIFPEMAAYAGYSFRELLLWMV 293
           P+S+FP+M  + G+ F E L   V
Sbjct: 303 PISMFPKMLEHNGHRFSEFLAQCV 326


>gi|300791157|ref|YP_003771448.1| D-alanine-D-alanine ligase [Amycolatopsis mediterranei U32]
 gi|299800671|gb|ADJ51046.1| D-alanine-D-alanine ligase [Amycolatopsis mediterranei U32]
          Length = 314

 Score =  256 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 99/311 (31%), Positives = 160/311 (51%), Gaps = 22/311 (7%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG+S ER+VSL SG+  ++AL+   F + + D D  +   L   +PD     LHG
Sbjct: 6   VAVLAGGLSHERDVSLRSGRRLSAALKSESFGIEEWDTDAGLLERLRTQRPDAVVVALHG 65

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117
             GE+G VQ +LE+L +P+  +G      + DK  +K +V + G      +++   T   
Sbjct: 66  GEGENGSVQTVLEMLGVPFVGTGSQGCRRAWDKPTAKALVQNAGFVTPGWVVLPHSTFRE 125

Query: 118 ------MDSQ-HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                 +D+    +  P ++KP +GGS+LG  V+++   +P  ++    + +GD +L E+
Sbjct: 126 LGAQAVLDAMVETLGLPLILKPDQGGSALGTQVVREAAELPAAMV--GCFAYGDTVLAER 183

Query: 171 YVDGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE 226
           +VDG+E+   V+    G  +L   EI VP+S  Y Y  +Y++  +    PA++     K 
Sbjct: 184 FVDGVEVAVTVIEGEDGPEALPAVEI-VPESGVYDYTARYTAGLTDFFTPARLDDAAAKA 242

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS-- 284
           V  LA  AH+ +G R ISR+D         V +LE+N  PG+T  S  P     AG S  
Sbjct: 243 VAELAVAAHRVLGLRDISRTDA-VVMADGTVHFLEVNPSPGLTETSTVPMAIEAAGKSLG 301

Query: 285 --FRELLLWMV 293
             F EL+   +
Sbjct: 302 AVFGELIGRAI 312


>gi|302335980|ref|YP_003801187.1| D-alanine/D-alanine ligase [Olsenella uli DSM 7084]
 gi|301319820|gb|ADK68307.1| D-alanine/D-alanine ligase [Olsenella uli DSM 7084]
          Length = 359

 Score =  256 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 90/352 (25%), Positives = 152/352 (43%), Gaps = 59/352 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           +A+L GG SSE +VSL S       L      ++ + + R    +L              
Sbjct: 7   VALLFGGTSSEHDVSLRSAANVID-LLSERVDLTLVGITRGGSWLLYGGDATAIADDSWQ 65

Query: 47  -------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81
                                      L  D+ F VLHG  GEDG+ Q +LE   +PY  
Sbjct: 66  GHDTTPVCAVPGDGGGLFAVEGGSPVRLPIDVVFPVLHGQGGEDGVTQGLLESCRLPYVG 125

Query: 82  SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT-----MDSQHLISPPYVIKPLKGG 136
            G+L+SAL  DK  + ++V++ G+      +V+         +       P  +KP +GG
Sbjct: 126 CGVLSSALCTDKDAAHRIVAAAGIRSPRCEVVHPGDGATRIAEVAAACGYPLFVKPARGG 185

Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD-----VTE 191
           SS G+  ++  + +  D     ++ + +++ +E+ + G E+ C +MG A+ +     V E
Sbjct: 186 SSYGVSKVEGPEQL--DEALGLAFGYDEKVAVEEAIVGTEVGCAIMGGAAGELAMGLVDE 243

Query: 192 IAVPKSDFYSYELKYSSL------NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
             V    F+     +S        NS+   PA +P ++ + V+       +A+GC G++R
Sbjct: 244 TVVSDGGFFHIHQDHSEGADASTRNSSTRCPALLPPEVMERVRETGTAVWRALGCSGLAR 303

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
            D        +V + E+N  PG+T  S FP M A AG    E+L  +V  A+
Sbjct: 304 VDLFVTER-GEVVFNEVNTMPGLTSYSRFPAMMAAAGADMGEVLERLVRSAA 354


>gi|85858828|ref|YP_461030.1| D-alanine--D-alanine ligase [Syntrophus aciditrophicus SB]
 gi|85721919|gb|ABC76862.1| D-alanine--D-alanine ligase [Syntrophus aciditrophicus SB]
          Length = 352

 Score =  256 bits (655), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 100/340 (29%), Positives = 169/340 (49%), Gaps = 49/340 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD------------------RSV 42
           + +++GG+SSEREVSL+SG+     L+   ++   + +D                  R +
Sbjct: 7   VGIILGGMSSEREVSLNSGRNVYDNLDAEFYEGVPVFMDAQGGLWILPWHLISQNTTRDI 66

Query: 43  GLVLA-----------HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSM 91
              L              + D AF  LHG +G+DG +Q +LELL IPYT  G++ASAL M
Sbjct: 67  TERLKGEARRIAYEDLKKEIDFAFISLHGKYGDDGCIQGLLELLRIPYTGPGVMASALGM 126

Query: 92  DKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI---------SPPYVIKPLKGGSSLGII 142
           DK   ++++ + GV V  S+LV          I           P   KP++ GSS+G+ 
Sbjct: 127 DKHLQQKILRAAGVAVPESLLVREEEWRQDSQIVKDRVKEFPGYPCFTKPIREGSSVGVT 186

Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSD 198
           V++ +  +   +  +  W+    +L+E+Y++G E +C V+ +      L++TEI  P+S+
Sbjct: 187 VVRDEADLERGMEDALKWDRA--VLVEEYLEGREFSCIVLEEEGQFHPLELTEIH-PQSE 243

Query: 199 FYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSD-FLFDPLSRK 256
           F++Y+ KY         P K IP D+ ++++     A +A+G R   R D F+ +    +
Sbjct: 244 FFTYDDKYMPGRCRKFTPPKTIPPDVTEQIKAEVIRAFKALGFRSYGRIDGFILN--DGR 301

Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +   + N   GM P S F E AA AG     ++  ++E+A
Sbjct: 302 ILITDPNSSSGMAPSSFFFEQAACAGMLPSMIITTLIENA 341


>gi|314987134|gb|EFT31226.1| D-ala D-ala ligase [Propionibacterium acnes HL005PA2]
          Length = 315

 Score =  256 bits (655), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 86/309 (27%), Positives = 142/309 (45%), Gaps = 18/309 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VL GG+S +R++SL SG+  A AL   G +V + D+D ++   L      + F +LHG
Sbjct: 5   VVVLAGGLSHQRDISLKSGRPVAQALRRVGHEVVEADIDSALIETLRANDGAVVFPMLHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GE+G +  +L+L+ IPY  S      +S DK  + + V++ G+     + +       
Sbjct: 65  GLGENGALLEVLQLMGIPYVGSSPATCRISFDKSIASRAVAAAGIVTPQQVALPHDVFRE 124

Query: 121 ----------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                           P ++KP +GGSSLG+  +     +P  +    ++ + D +++E+
Sbjct: 125 LGAQTVMRSIAEKFGLPVIVKPARGGSSLGVTKVDGVDDLPQAVAN--AYAYDDMVVVEE 182

Query: 171 YVDGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE 226
           ++ G EL  G++    G   L   EI  P    Y Y   Y+   +    PA I     + 
Sbjct: 183 FIVGTELAIGMITTSEGTRVLPAVEIR-PVGGVYDYSAMYTGGETRLTAPADISDTAAQT 241

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
              +A +  + +   GISR D + D   R VF LE    PGMT  S+ P     AG    
Sbjct: 242 ATAMARVVQKELDFSGISRVDAIVDESGRPVF-LEAGAAPGMTATSLVPVAMKAAGLDLG 300

Query: 287 ELLLWMVED 295
           E+   +V+D
Sbjct: 301 EVCSRLVDD 309


>gi|309774770|ref|ZP_07669792.1| D-alanine--D-alanine ligase [Erysipelotrichaceae bacterium 3_1_53]
 gi|308917455|gb|EFP63173.1| D-alanine--D-alanine ligase [Erysipelotrichaceae bacterium 3_1_53]
          Length = 384

 Score =  256 bits (654), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 85/356 (23%), Positives = 150/356 (42%), Gaps = 66/356 (18%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVG----------------- 43
           +AV  GG S E E+S+ S +   +A+ +  +++  + + +                    
Sbjct: 5   IAVAFGGRSVEHEISVLSAQQVMAAMNEERYEILPLYIAKDGRMFCEEELRELETFQHIE 64

Query: 44  --------------------------LVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEI 77
                                     L     + DL F VLHG  GEDG  Q  L+ L +
Sbjct: 65  EFIADHDSVSLIRRDAHTYLIPSRRRLFAKEREVDLVFPVLHGTNGEDGTFQGYLKTLGV 124

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIK 131
           PY    +LA A+  DK+  KQV+   G+ V P         + +        +  P +IK
Sbjct: 125 PYVGCSVLAGAIGQDKVIMKQVLQDSGLRVVPWFFWTLHQPMEQSFFKKAQRLGYPLIIK 184

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASL--- 187
           P   GSS+GI V   D  +   ++++  ++H  +++IE+ ++   E+   V+GD      
Sbjct: 185 PANLGSSVGIAVAHNDVELHKSMIEAFQYDH--KVVIEKVIEPLREINASVLGDEDGCRC 242

Query: 188 DVTEIAVPKSDFYSYELKY-------SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
              E  + + +  SY+ KY         ++++  LPA++  +  +EVQR+A    +++  
Sbjct: 243 STLEEVIKQDEILSYQDKYHGQGKSKGMVSTSRKLPAELTEEQTEEVQRMAMDTFRSLNA 302

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            G+ R DFL    S +++  EIN  PG     +        G SF  +L  ++  A
Sbjct: 303 AGVVRIDFLMQQDSGELYVNEINTIPGSLSFYL----WEQEGLSFSAMLDELIALA 354


>gi|153832853|ref|ZP_01985520.1| D-alanine--D-alanine ligase [Vibrio harveyi HY01]
 gi|148870987|gb|EDL69877.1| D-alanine--D-alanine ligase [Vibrio harveyi HY01]
          Length = 329

 Score =  256 bits (654), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 82/327 (25%), Positives = 142/327 (43%), Gaps = 34/327 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDVDRSVGLVLA------------ 47
           + +L GG SSE E+SL S       L       V+++++     +               
Sbjct: 5   ILLLCGGGSSEHEISLLSANFVEQQLNLIENVSVTRVEIKNEGWVTNQGELVYLDLNQKK 64

Query: 48  ------HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
                  L  D     +HG  GE G +Q++ E+  IPY   G  AS+ S +K+ SK    
Sbjct: 65  LCSDNLSLDVDFIVPCIHGFPGETGDIQSMFEIAGIPYLGCGPEASSNSFNKITSKLWYD 124

Query: 102 SCGVPVCPSILVNRFTMDSQHLIS------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
           + G+P  P + + R    +               +K  + GSS+G   + + QS+   + 
Sbjct: 125 AIGIPNTPYLFLTRNDEQAHEQALQAFDKWGKVFVKAARQGSSVGCYSVTEKQSVSQAV- 183

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYSSLNS 211
            + ++ + +Q+L+E+ V   EL       +  L +T   E+  P   FYSY+ KYS+ + 
Sbjct: 184 -NDAFGYSEQVLVEKSVKPRELEVAAYEMNGELHITKPGEVIAPDGAFYSYDEKYSTSSH 242

Query: 212 --THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
             T V    +     + ++  +    + +  R +SR DF       +++  E+N  PGMT
Sbjct: 243 SLTEVEAKNLTEAQVEAIRVASETVFKQMNLRHLSRIDFFLTE-DGEIYLNEVNTFPGMT 301

Query: 270 PVSIFPEMAAYAGYSFRELLLWMVEDA 296
           P+S+FP+M    G+ F E L   +  A
Sbjct: 302 PISMFPKMLQNNGHKFHEFLADCINTA 328


>gi|325479720|gb|EGC82810.1| D-ala D-ala ligase N-terminal domain protein [Anaerococcus prevotii
           ACS-065-V-Col13]
          Length = 345

 Score =  256 bits (654), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 87/338 (25%), Positives = 151/338 (44%), Gaps = 46/338 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR------SVGLVLAHLKPDLA 54
           + +L GG SSE +++L S    ++ L +  + +  + +D+          +  + + DL 
Sbjct: 4   VYILCGGPSSEHDIALRSALNISNNLNENKYNIKLVYIDKKGAFSEPFEKIETNDEFDLV 63

Query: 55  ----------------------------FNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
                                         V+HG +GEDG +QA L++  I Y  +G+L+
Sbjct: 64  RDIKESKTKSISNFLDIISKEDLTNTIILPVVHGTYGEDGTIQAFLDVAGISYIGNGLLS 123

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ------HLISPPYVIKPLKGGSSLG 140
           SA+ MDK+ S  +     +     +  N+  +D          I  P ++KP   GSS+G
Sbjct: 124 SAICMDKVTSNDIFEKNKLRQAKYLYTNKEGLDDNFLDKCIEEIGLPLIVKPSANGSSVG 183

Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA--VPKSD 198
           +  +   + +    L++    +  ++L+E+ ++G E+   V+GD + DV++ A  +    
Sbjct: 184 VNKVTTRKELLDSGLEAL--KYDKKVLVEELIEGQEIEFAVVGDMNPDVSKPAAYISDHT 241

Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
           F  Y+ KY S ++   LP K+  D  KE Q      + A GC G +R D  +       +
Sbjct: 242 FLDYDAKYFSKSTKESLPYKLDEDKLKEAQEFVKKCYVACGCEGFARVDIFY-ANDGNFY 300

Query: 259 WLEINVQPGMTPVSIFPEMAAYA-GYSFRELLLWMVED 295
             EIN  PG TP S F  +       SF ELL  ++ED
Sbjct: 301 VNEINTFPGFTPSSFFARLCELMYDKSFSELLDILIED 338


>gi|212697006|ref|ZP_03305134.1| hypothetical protein ANHYDRO_01571 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212676004|gb|EEB35611.1| hypothetical protein ANHYDRO_01571 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 352

 Score =  256 bits (654), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 76/336 (22%), Positives = 143/336 (42%), Gaps = 47/336 (13%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR------SVGLVLAHLKPDLA-- 54
           +L GG SSE +++L S    +  L    +K+  + VD+      +   +    + DL   
Sbjct: 10  LLCGGPSSEHDIALRSALNISKNLNKEKYKLKLVYVDKKGRFSKAFDFIDTDDEFDLVKT 69

Query: 55  --------------------------FNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
                                        +HG +GEDG +Q  L+ +++ Y  +G+L+S+
Sbjct: 70  CKENILESISDFLLELKDKDKDNTIIIPCIHGTYGEDGTIQGFLDAIDMAYIGNGLLSSS 129

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVIKPLKGGSSLGII 142
           + MDK+ +  +     +     +     T +       Q  I  P ++KP   GSS+G+ 
Sbjct: 130 VCMDKVTANDIFEKNKLSQARYLYAKEETFNEDFAKKCQEYIKFPMIVKPSANGSSVGVN 189

Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA--VPKSDFY 200
             +  + +        +  + +++L+E+ + G E+   V+G+  L  ++         F 
Sbjct: 190 KAENIEELLK--FGKEALKYDEKILVEEAIIGQEVEIAVIGENELMASKPGAYTTDHTFL 247

Query: 201 SYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260
            Y+ KY   ++   LP  I  ++ KE+   A   ++A GC+G +R D        K +  
Sbjct: 248 DYDAKYFDKSTKEELPYPIDENLEKELLEFAKKCYKACGCQGFARVDIFL--KDNKFYIN 305

Query: 261 EINVQPGMTPVSIFPEMAAYA-GYSFRELLLWMVED 295
           EIN  PG TP S F  +   +    F E+L  ++E+
Sbjct: 306 EINTFPGFTPTSFFARLCKISFNLEFEEILNMLIEE 341


>gi|258622707|ref|ZP_05717726.1| D-alanine--D-alanine ligase [Vibrio mimicus VM573]
 gi|258585020|gb|EEW09750.1| D-alanine--D-alanine ligase [Vibrio mimicus VM573]
          Length = 334

 Score =  256 bits (654), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 89/324 (27%), Positives = 144/324 (44%), Gaps = 34/324 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDVDRSVGLVLAHL---------- 49
           + +L GG SSE E+SL S       LE    F V ++++ +                   
Sbjct: 6   ILLLCGGGSSEHEISLVSANYIQQQLELTPEFNVVRVEMKKEGWFSKHGELVYLDTNSAT 65

Query: 50  --------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
                     D     +HG  GE G +Q++LEL  IPY   G  ASA S +K+ SK    
Sbjct: 66  LNGDNISYPIDFVVPCIHGFPGETGDIQSMLELAGIPYLGCGPEASANSFNKITSKLWYD 125

Query: 102 SCGVPVCPSILVNRFTMDSQHLISPPY------VIKPLKGGSSLGIIVIKKDQSIPLDLL 155
           + G+P  P + + + T DS       +       +K  + GSS+G   +  ++ I     
Sbjct: 126 ALGIPNTPYLFLTQNTSDSVEKARQAFRNWGSIFVKAARQGSSVGCYKVTSEEQIAA--A 183

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKY--SSL 209
             +++   +Q+L+E+ V   EL       +  L ++   EI  P+  FYSYE KY  +S 
Sbjct: 184 IEAAFGFSEQVLVEKAVKPRELEVAAYEMNGKLFISKPGEIIAPEDAFYSYEEKYSATSH 243

Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
           + T +    +  +  + +Q+ A      +  R +SR DF        ++  E+N  PGMT
Sbjct: 244 SRTLIEAENLTDEQRELIQQSAERVFVHMKLRHLSRIDFFLT-QDDHIYLNEVNTFPGMT 302

Query: 270 PVSIFPEMAAYAGYSFRELLLWMV 293
           P+S+FP+M  + G+ F E L   V
Sbjct: 303 PISMFPKMLEHNGHRFSEFLAQCV 326


>gi|229496826|ref|ZP_04390535.1| D-ala D-ala ligase [Porphyromonas endodontalis ATCC 35406]
 gi|229316237|gb|EEN82161.1| D-ala D-ala ligase [Porphyromonas endodontalis ATCC 35406]
          Length = 330

 Score =  255 bits (653), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 83/322 (25%), Positives = 141/322 (43%), Gaps = 31/322 (9%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           +A++ GG S EREVSL S       ++   F    + + R +  V               
Sbjct: 8   IAIVAGGYSGEREVSLRSAATIIKDIDRTLFSPYLVRLSRDLWEVQVEDTWLPIDRNHFS 67

Query: 46  ----LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
                   + D AF  +HG  GE+GL+Q   ++LEIPY   G+L  +L+ DK      +S
Sbjct: 68  FSMGDKECRFDYAFITIHGTPGENGLLQGYFDMLEIPYNTGGVLCESLTFDKFTCNHYLS 127

Query: 102 SCGVPVCPSILVNRF----TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
           + G+ +  S  +         +    I  P  +KP  GGSS+    +     +   +   
Sbjct: 128 AFGIRIAASERLFSDIPYQVEEVAKRIPLPVFVKPNAGGSSIATTKVTSMDQL--AVAIQ 185

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMG----DASLDVTEIAVPKSDFYSYELKYSSLNSTH 213
            ++    ++L+E+ ++G E+T G          L +TE+ + K +F+ ++ KY   NS  
Sbjct: 186 KAFEEAPEVLVERLIEGTEVTSGCYIVNNTPHPLPLTEVVIKKGEFFDFDAKY-HGNSDE 244

Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273
           + PA+I   + +E+Q L       +  +GI R D++      K   LE+N  PGMT  S 
Sbjct: 245 ITPARISEKLTQELQELTSRIALLLHAQGIIRVDYII-EADGKPTLLEVNTTPGMTEASF 303

Query: 274 FPEMAAYAGYSFRELLLWMVED 295
            P+    AG     +   ++ D
Sbjct: 304 IPQEIRAAGLELSHIFTAIIND 325


>gi|149371693|ref|ZP_01891109.1| D-alanylalanine synthetase [unidentified eubacterium SCB49]
 gi|149355320|gb|EDM43880.1| D-alanylalanine synthetase [unidentified eubacterium SCB49]
          Length = 327

 Score =  255 bits (653), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 89/321 (27%), Positives = 144/321 (44%), Gaps = 32/321 (9%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40
           +AVLMGG SSE  +SL+SG     AL+   + V  I +                    D 
Sbjct: 8   IAVLMGGYSSEVNISLNSGHIVCQALDKNKYNVYPIHILKEGWFYVPKTATNIPIDKGDF 67

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           S   +   + PD  FN +HG  GEDG + A  ELL IP T SG   +ALS +K     V+
Sbjct: 68  SFETLEGTIIPDAVFNTVHGTPGEDGYLAAYFELLGIPQTSSGFYEAALSFNKRDCLSVL 127

Query: 101 SSCGVPVCPSILVNRFTMDSQH----LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
            + GV    S   N+      +     +  P  +KP + GSS GI  +   ++    L  
Sbjct: 128 KNFGVKCANSYYHNQGEPIDVNAVITKVGLPCFVKPNRAGSSFGISKVNTIEAFVPAL-- 185

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGV---MGDASLDVTEIAVPKSDFYSYELKYSSLNSTH 213
             ++    +++IE  + G E++ G     G+  +      V ++DF+ YE KY    S  
Sbjct: 186 ERAYKEDSEIIIETALVGTEVSVGAYSHYGNIKVFNPTEIVSENDFFDYEAKYE-GKSQE 244

Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273
           + PA+I     ++V+      +  +  +G+ RS+F+        +++EIN  PG++  SI
Sbjct: 245 ITPARISESDTQKVKAETKRIYNLLKMKGVCRSEFII--QDGVPYFIEINTTPGLSSESI 302

Query: 274 FPEMAAYAGYSFRELLLWMVE 294
            P+    AG    E    +++
Sbjct: 303 IPKQVKDAGMDLGEFFGELID 323


>gi|301167108|emb|CBW26687.1| D-alanine--D-alanine ligase [Bacteriovorax marinus SJ]
          Length = 329

 Score =  255 bits (653), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 86/330 (26%), Positives = 144/330 (43%), Gaps = 37/330 (11%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAG-FKVSQIDVDRSVGLVLAHL---------- 49
           + +L GG  SE EVSL S       LE    + V ++++  +   V  H           
Sbjct: 4   ILLLCGGGGSEHEVSLRSANYIYDELEKVNLYNVFKVEIKANGDRVDHHGQLCELRKAGE 63

Query: 50  ----------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
                     K D A   +HG  GE+G++Q+I EL+ +PY       S    +K+ +K  
Sbjct: 64  LYYPSSDQTHKLDFAIPCIHGPPGENGVIQSIFELMGLPYLGCSPEPSQTCFNKVSTKLW 123

Query: 100 VSSCGVPVCPSILVNRFTMDSQHLISP------PYVIKPLKGGSSLGIIVIKKDQSIPLD 153
           + +  VP  P I ++  + +S               IK    GSS+G   +   + +   
Sbjct: 124 LDALKVPNTPYIYLSDESRESISAAEEFFNANKDVYIKAASQGSSVGCYHVTSLEDLEST 183

Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT----EIAVPKSDFYSYELKYSSL 209
           +L  S++   + +LIE+ +   EL        +  V     EI  P   FY Y+ KYS+ 
Sbjct: 184 IL--SAFKFSEYVLIERTLKARELEVSAFEYNNEVVITAPGEIICPD-GFYDYDQKYSND 240

Query: 210 NS--THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPG 267
           ++  T V    +  +   +++  +  A + +  R +SR DF       KV+  EIN  PG
Sbjct: 241 SATKTEVNAKGLSAEQINDIKSYSLKAFKGLKLRHLSRIDFFLTE-EGKVYLNEINTFPG 299

Query: 268 MTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           MT +S+FP+M    G  F E L  ++E+++
Sbjct: 300 MTSISMFPKMMENHGVKFSEYLRKIIEEST 329


>gi|32490966|ref|NP_871220.1| hypothetical protein WGLp217 [Wigglesworthia glossinidia
           endosymbiont of Glossina brevipalpis]
 gi|31340031|sp|Q8D2Y5|DDL_WIGBR RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|25166172|dbj|BAC24363.1| ddlA [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 350

 Score =  255 bits (653), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 93/342 (27%), Positives = 166/342 (48%), Gaps = 52/342 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           +AVL GG S E E+SL S  +  +A++   + +  I V+++  + +              
Sbjct: 5   VAVLFGGESKEHEISLQSSISIINAIDKKKYNIILIGVEKNGKIGIRSINNYILFKYNIN 64

Query: 49  ------------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIP 78
                                         LK D+ F++LHG+ GE+G  Q +   +  P
Sbjct: 65  YIKLAPAVSYLYIIPGKNNYQFYSLKNKKMLKIDVIFSILHGSNGENGAFQGLFNTIYTP 124

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN-----RFTMDSQHLISPPYVIKPL 133
           +  S +L+S++ MDK  SK+++S+ G+ V PSI +      +      + I  P  IKP 
Sbjct: 125 FVGSNVLSSSICMDKDISKRILSTFGISVVPSITLYYENYKKKINKIINNIKFPCCIKPS 184

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
             GSS G+ V      I L      ++ +  ++LIE ++ G E+  GV+G+ ++  +   
Sbjct: 185 NQGSSFGVNVANDF--ISLKESIDVAFLYSKKILIEPFIQGREIEVGVLGNRNVISSVCG 242

Query: 194 VPKSD--FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
             K    FY Y+ KY S  +  ++PAKI  +I  +++++A LA  ++ C  ++R DF   
Sbjct: 243 EIKFKKIFYDYKEKYISKKTKIIIPAKISNEISNKIKKIAKLAFISLECSIMARVDFFLT 302

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
             ++K+F  EIN  PG T  SI+P++ + +G  F+ L+  ++
Sbjct: 303 K-NKKIFLNEINTIPGFTKNSIYPKLWSKSGLDFKSLINKLI 343


>gi|297561190|ref|YP_003680164.1| D-alanine--D-alanine ligase [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
 gi|296845638|gb|ADH67658.1| D-alanine--D-alanine ligase [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
          Length = 326

 Score =  255 bits (652), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 96/308 (31%), Positives = 146/308 (47%), Gaps = 18/308 (5%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62
           VL GG+S E EVS+ SG+  A AL   G +V   DVD ++   L    P + F VLHG  
Sbjct: 19  VLAGGLSPEHEVSVHSGRGVAEALRRLGVEVQVADVDSTLLDRLVQDPPQVVFPVLHGAA 78

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-- 120
           GEDG ++ +LEL+ +PY  +      L+  K  +K ++++ GV V     + +       
Sbjct: 79  GEDGAIREVLELVGVPYVGARPGGCRLAYSKPAAKALLAAEGVRVPRGAALPKSAFHDLG 138

Query: 121 --------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                      +  P  +KP +GGS+ G   +   Q +   L+  S + + D  L+E+ V
Sbjct: 139 APALMDRLADRLGLPLFVKPDRGGSAFGAAPVGSVQELSAALV--SCFAYSDSALVEEQV 196

Query: 173 DGIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
            G EL  GV+       +L   EI VP    Y Y  +Y++  +    PA++      E  
Sbjct: 197 QGTELAVGVLDTGDGPVALPPVEI-VPDGGVYDYAARYTAGRTEFFCPARLDPATVAEAT 255

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
            +A  AH+ +G R +SR+D +      +V +LE NV PG+T  S FP  AA AG  F   
Sbjct: 256 EVALTAHRVLGLRDLSRTDVIV-GTDGRVTFLETNVAPGLTETSTFPMGAAAAGLDFAVA 314

Query: 289 LLWMVEDA 296
              +   A
Sbjct: 315 CRELAHQA 322


>gi|34540521|ref|NP_905000.1| D-alanyl-alanine synthetase A [Porphyromonas gingivalis W83]
 gi|39930822|sp|Q7MWA2|DDL_PORGI RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|34396834|gb|AAQ65899.1| D-alanine--D-alanine ligase [Porphyromonas gingivalis W83]
          Length = 330

 Score =  255 bits (652), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 86/324 (26%), Positives = 150/324 (46%), Gaps = 34/324 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASAL------------EDAGFKV-------SQID-VDR 40
           +AV+ GG S E  VSL S     S L            E   + V         +D  D 
Sbjct: 6   VAVIAGGYSGEHSVSLKSAAGILSWLGSEPFSTFLVLIERDRWSVRVSEQREVPLDKNDF 65

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           S  L    ++ D A+  +HG  GE+GL+Q  L+++ IPY     L  +L+ +K    + +
Sbjct: 66  SFDLDGERIRFDYAYITIHGTPGENGLLQGYLDMIGIPYNTGDTLVESLTFNKYVCNRFL 125

Query: 101 SSCGVPVCPSILVNRFT-----MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
           S  G+ +  S+ +          D    +  P  +KP  GGSS+    + +   +   + 
Sbjct: 126 SGFGIRIADSMRLTGRDTQPDVADLIARMGLPLFVKPNVGGSSIATTKVVEAAQLLPAIE 185

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNS 211
           Q  +++ G++++IE+ + G E+TCG         +L VTE+ V  ++F+ ++ KY+    
Sbjct: 186 Q--AFSEGEEVMIERLICGTEVTCGAFLRKKEVVALPVTEV-VAHNEFFDFDAKYN-GAV 241

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271
             + PA+I  +  + +Q +    ++ +  RGI R D++          LE+N  PGMTP 
Sbjct: 242 EEITPARISDEATRLIQTMTARIYELLNARGIIRVDYII-EADGIPTLLEVNTTPGMTPT 300

Query: 272 SIFPEMAAYAGYSFRELLLWMVED 295
           S  P+    AG   +E+L  ++ D
Sbjct: 301 SFIPQQVRAAGMDMKEVLCTIIRD 324


>gi|325849556|ref|ZP_08170794.1| D-ala D-ala ligase N-terminal domain protein [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
 gi|325480037|gb|EGC83114.1| D-ala D-ala ligase N-terminal domain protein [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
          Length = 348

 Score =  255 bits (652), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 75/336 (22%), Positives = 143/336 (42%), Gaps = 47/336 (13%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR------SVGLVLAHLKPDLA-- 54
           +L GG SSE +++L S    +  L    +K+  + VD+      +   +    + DL   
Sbjct: 6   LLCGGPSSEHDIALRSALNISKNLNKEKYKLKLVYVDKKGRFSKAFDFIDTDDEFDLVKT 65

Query: 55  --------------------------FNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
                                        +HG +GEDG +Q  L+ +++ Y  +G+L+S+
Sbjct: 66  CKENILESISDFLLELKDKDKDNTIIIPCIHGTYGEDGTIQGFLDAIDMAYIGNGLLSSS 125

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVIKPLKGGSSLGII 142
           + MDK+ +  +     +     +     T +       Q  I  P ++KP   GSS+G+ 
Sbjct: 126 VCMDKVTANDIFEKNKLSQARYLYAKEETFNEDFAKKCQEYIKFPMIVKPSANGSSVGVN 185

Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA--VPKSDFY 200
             +  + +        +  + +++L+E+ + G E+   ++G+  L  ++         F 
Sbjct: 186 KAENIKELLK--FGKEALKYDEKILVEEAIIGQEVEIAIIGENELMASKPGAYTTDHTFL 243

Query: 201 SYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260
            Y+ KY   ++   LP  I  ++ KE+   A   ++A GC+G +R D        K +  
Sbjct: 244 DYDAKYFDKSTKEELPYPIDENLEKELLEFAKKCYKACGCQGFARVDIFL--KDNKFYIN 301

Query: 261 EINVQPGMTPVSIFPEMAAYA-GYSFRELLLWMVED 295
           EIN  PG TP S F  +   +    F E+L  ++E+
Sbjct: 302 EINTFPGFTPTSFFARLCKISFNLEFEEILDMLIEE 337


>gi|269959743|ref|ZP_06174122.1| D-alanine--D-alanine ligase [Vibrio harveyi 1DA3]
 gi|269835497|gb|EEZ89577.1| D-alanine--D-alanine ligase [Vibrio harveyi 1DA3]
          Length = 329

 Score =  255 bits (652), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 81/327 (24%), Positives = 142/327 (43%), Gaps = 34/327 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDVDRSVGLVLA------------ 47
           + +L GG SSE E+SL S       L       V+++++     +               
Sbjct: 5   ILLLCGGGSSEHEISLLSANFVEQQLNLIENVSVTRVEIKNEGWVTNQGELVYLDLNTKK 64

Query: 48  ------HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
                  L  D     +HG  GE G +Q++ E+  IPY   G  AS+ S +K+ SK    
Sbjct: 65  LCSDNLSLDIDFIVPCIHGFPGETGDIQSMFEIAGIPYLGCGPEASSNSFNKITSKLWYD 124

Query: 102 SCGVPVCPSILVNRFTMDSQHLIS------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
           + G+P  P + + R    +               +K  + GSS+G   + + +++   + 
Sbjct: 125 AIGIPNTPYLFLTRNDEQAHEQALQAFDKWGKVFVKAARQGSSVGCYSVTEKEALSQAV- 183

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYSSLNS 211
            + ++   +Q+L+E+ V   EL       +  L +T   E+  P   FYSY+ KYSS + 
Sbjct: 184 -NDAFGFSEQVLVEKSVKPRELEVAAYEMNGQLFITKPGEVIAPDGAFYSYDEKYSSSSH 242

Query: 212 --THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
             T V    +  +  + ++  +    + +  R +SR DF       +++  E+N  PGMT
Sbjct: 243 SLTEVEAKNLTEEQVEAIRVASETVFKQMNLRHLSRIDFFLTE-DDEIYLNEVNTFPGMT 301

Query: 270 PVSIFPEMAAYAGYSFRELLLWMVEDA 296
           P+S+FP+M    G+ F E L   +  A
Sbjct: 302 PISMFPKMLQNNGHKFHEFLADCIHTA 328


>gi|315181561|gb|ADT88474.1| D-alanine--D-alanine ligase [Vibrio furnissii NCTC 11218]
          Length = 334

 Score =  254 bits (650), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 94/332 (28%), Positives = 146/332 (43%), Gaps = 42/332 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDVDRSVGLVLA------------ 47
           + +L GG SSE EVSL S       L     F V ++++ +                   
Sbjct: 6   ILLLCGGGSSEHEVSLVSANYLQQQLSLTPDFDVVRVEMKKEGWFSDTGEIVYLDTNSAT 65

Query: 48  ------HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
                  LK D     +HG  GE G +Q++ EL  IPY   G  AS+ S +K+ SK    
Sbjct: 66  LNGEGLSLKIDFVIPCIHGYPGETGDIQSMFELAGIPYLGCGPEASSNSFNKITSKLWYD 125

Query: 102 SCGVPVCPSILVN-------RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154
           +  +P  P + ++       + T D+         IK  + GSS+G   + K     +  
Sbjct: 126 ALDIPNTPYLFLSENNAQALKNTQDAFAKWGS-LFIKAARQGSSVGCYKVTK--EDQIAA 182

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYSSLN 210
              +++++ +Q+L+EQ V   EL       +  L +T   EI  P+  FYSYE KYS+ +
Sbjct: 183 AIDAAFSYSEQVLVEQAVKPRELEVAAYEMNGELFITKPGEIIAPEDAFYSYEEKYSTDS 242

Query: 211 --STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268
              T V    +  +    + ++A      +  R +SR DF   P    V+  E+N  PGM
Sbjct: 243 HSRTEVEAGNLTDEQQALIHQVAQKVFTHMKLRHLSRIDFFLTP-EGHVYLNEVNTFPGM 301

Query: 269 TPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           TP+S+FP+M    G+ F E L      A C+R
Sbjct: 302 TPISMFPKMLENNGHQFDEFL------ADCVR 327


>gi|296126249|ref|YP_003633501.1| D-alanine/D-alanine ligase [Brachyspira murdochii DSM 12563]
 gi|296018065|gb|ADG71302.1| D-alanine/D-alanine ligase [Brachyspira murdochii DSM 12563]
          Length = 322

 Score =  254 bits (650), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 101/304 (33%), Positives = 153/304 (50%), Gaps = 16/304 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASAL---EDAGFKVSQIDVDR--SVGLVLAHLKPDLAF 55
           +AVL GG + EREVSL SGK    AL   E+       IDV     +   L     +  +
Sbjct: 20  IAVLHGGQNEEREVSLRSGKNVYKALTSFEELKDNCILIDVQDAYDLVKTLKENNIEYCY 79

Query: 56  NVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL--- 112
           N+LHG  GEDG +Q +LE L I YT   IL SA+ M+K+ +K++  S  V     +L   
Sbjct: 80  NILHGTSGEDGTIQGLLESLNIKYTGENILVSAVCMNKVYTKRIWKSSNVSTSDFVLLKD 139

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
           V      S   ++ P +IKP+  GSS+G+ +IK  +    D       +  +  L E Y+
Sbjct: 140 VKDVNNTSAGGLNFPIIIKPISSGSSVGVSLIKNKEEF--DNTIKKIEDINNYFL-EPYI 196

Query: 173 DGIELTCGVMGDAS---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
            G E+T G++ +     +        K++ Y Y+ KY+   +   +PAKI  DI K+V  
Sbjct: 197 KGKEITVGLVKEEDDIYVFPILGINSKNEIYDYDAKYTPGKTELEVPAKISKDIEKKVIE 256

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
               A+  +GC G+SR D +    + +V+ +E+N Q GMT  S  P MA   G  F +L 
Sbjct: 257 TCKRAYTVLGCGGLSRIDAII--ANDEVYLMEVNTQSGMTDTSDVPAMAKNCGIEFADLA 314

Query: 290 LWMV 293
           L+++
Sbjct: 315 LYIL 318


>gi|257869519|ref|ZP_05649172.1| D-alanine-D-alanine ligase [Enterococcus gallinarum EG2]
 gi|257803683|gb|EEV32505.1| D-alanine-D-alanine ligase [Enterococcus gallinarum EG2]
          Length = 277

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 77/246 (31%), Positives = 127/246 (51%), Gaps = 7/246 (2%)

Query: 49  LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
           L  D  F  LHG  GE+G +QA  ++  I Y+ S    S L+MDK  +KQ++    +P  
Sbjct: 31  LNADFCFIALHGGIGENGKLQAFFDIYGIRYSGSHYKGSLLAMDKDIAKQLMKLNDIPTP 90

Query: 109 PSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168
              +   +    +   S P V+KP+  GSS+G+ +++  +     L ++    +  +++I
Sbjct: 91  KWQI---WEQGQEVYYSTPCVVKPIDNGSSIGVEIVENKEQFFKALKKAE--KYNSKVMI 145

Query: 169 EQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           EQ ++G E + GV+GD  L   EI +P+  FY+YE KY    +  + PA I  D+   + 
Sbjct: 146 EQKIEGREFSVGVLGDNVLPAIEI-IPQQGFYNYENKYQKGATEEITPADISSDLATRLS 204

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
            +  L ++ +G    SR D++       ++ +E N  PGMTP S+ P+ A   G SF EL
Sbjct: 205 EMTVLVNKVLGLSIYSRVDYIVTK-ELDIYCIEANSLPGMTPTSLLPQEAEAIGISFSEL 263

Query: 289 LLWMVE 294
              +VE
Sbjct: 264 CETIVE 269


>gi|213021542|ref|ZP_03335989.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Typhi str. 404ty]
          Length = 236

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 82/235 (34%), Positives = 126/235 (53%), Gaps = 12/235 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+ER+VSL+SG A  + L + G     +D        L  +     F  LHG
Sbjct: 5   IAVLLGGTSAERDVSLNSGAAVLAGLREGGIDAHPVDPQEVDVAQLKAMGFQKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LELL +PYT SG++ASALSMDK+RSK +    G+PV P + + R   + 
Sbjct: 65  RGGEDGTLQGMLELLGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124

Query: 121 ---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P ++KP + GSS+G+  + ++ ++   L  S ++ H D++LIE++
Sbjct: 125 GLSEEQKARISALGLPLIVKPSREGSSVGMTKVVEENALQGAL--SLAFQHDDEILIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE 226
           + G E T  ++G+  L    I  P   FY YE KY S  + +  PA +       
Sbjct: 183 LCGPEFTVAIVGEEILPSIRIQ-PAGTFYDYEAKYLSDETQYFCPAGLEASQEAA 236


>gi|229822689|ref|YP_002884215.1| D-alanine--D-alanine ligase [Beutenbergia cavernae DSM 12333]
 gi|229568602|gb|ACQ82453.1| D-alanine--D-alanine ligase [Beutenbergia cavernae DSM 12333]
          Length = 313

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 98/308 (31%), Positives = 159/308 (51%), Gaps = 18/308 (5%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62
           VL GG+S ER+VSL SG+  A AL DAG   +  DVD  +   L   +PD+ + +LHG+ 
Sbjct: 7   VLAGGLSHERDVSLRSGRRVAEALRDAGVSAAVRDVDADLLAYLDDARPDVVWPLLHGST 66

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-- 120
           GEDG ++ +LEL+ +    +G   S ++  K  +K V++  GV    S  + +       
Sbjct: 67  GEDGSIRDLLELVGVRAVGTGSAGSRIAWAKPVAKTVLARAGVATPASATLPQSLFRELG 126

Query: 121 --------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                      +  P V+KP  GGS+LG+ ++   +++P  ++  S +++GD  LIEQ V
Sbjct: 127 PHAVLGRVLDRLGLPLVVKPASGGSALGVSLVTSAEALPQAMV--SCFSYGDVALIEQAV 184

Query: 173 DGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
            G E+   V+    G  +L   EI V     Y ++ +Y++  + +  PA++P D      
Sbjct: 185 TGTEVAVSVVDLGDGPVALPPVEIVV-DDGPYDFDARYNAGRTEYFTPARLPADHLAAAC 243

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
            +A  AH  +  R +SR+D + D      ++LE+NV PGMT  S+FP  AA +     EL
Sbjct: 244 AVAVRAHDVLRLRHLSRTDLVVDGY-GVAWFLEVNVAPGMTETSLFPLAAAASPTPLPEL 302

Query: 289 LLWMVEDA 296
              + + A
Sbjct: 303 YRGLADVA 310


>gi|289616954|emb|CBI56344.1| unnamed protein product [Sordaria macrospora]
          Length = 334

 Score =  253 bits (648), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 88/334 (26%), Positives = 161/334 (48%), Gaps = 61/334 (18%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           +AV++GG S E +VS+S+G A  + ++ + + + +I + R       HL           
Sbjct: 11  IAVVVGGYSGEYDVSISTGAAIYTNVDRSRYNLYKIVIPRDPKAAWYHLTDSSQEIPVDR 70

Query: 50  --------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
                               K DLA+  +HGN GE+G++Q   ++L +PYT  G  AS+L
Sbjct: 71  NDFSVTLPSSSGSGENNQKIKFDLAYISIHGNPGENGVLQGYFDMLGLPYTSCGFYASSL 130

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI---SPPYVIKPLKGGSSLGIIVIKK 146
           + +                       F+ D+  L+     P  +KP  GGSS+    +K 
Sbjct: 131 TANNGT--------------------FSFDADALLREFELPVFVKPASGGSSVATTKVKS 170

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS-----LDVTE-IAVPKSDFY 200
            + +   +  +   +   Q+L+E+++ G E  CGV+ DA+       +TE I    S+++
Sbjct: 171 REQVVQAVEDAMREDGNGQVLVEEFIAGREFDCGVIRDAAGKLHVFPITEVIPHGDSEYF 230

Query: 201 SYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260
            Y  KY+  +S+ V PA++  ++   ++ ++   +  + CRG+ R D+ +D   +++++L
Sbjct: 231 DYNAKYN-GSSSKVTPAEVEEEVSDRIKDVSAQLYDLLDCRGVVRFDYRYDTDKKQLYFL 289

Query: 261 EINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           E+N  PG TP S+ P+ A  AG S  EL   ++E
Sbjct: 290 EVNTIPGQTPESMVPQQARAAGISIAELYHMVIE 323


>gi|323695828|gb|ADX99534.1| D-alanine D-alanine ligase [Streptomyces sp. MJM7001]
          Length = 316

 Score =  253 bits (648), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 91/308 (29%), Positives = 143/308 (46%), Gaps = 15/308 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+ GG+S EREVS  SG   A AL  AG      DV   +   LA  +  + F VLHG
Sbjct: 6   VVVIAGGLSPEREVSQKSGARVADALRRAGVGTELRDVGPDLLPALADAQGAVVFPVLHG 65

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG ++ ILEL  +PY  +   A   + DK  +K+     G+    S+ + +     
Sbjct: 66  VAGEDGTIKEILELAGVPYVGARPGACRAAFDKAVAKETFVRAGLSTPASVTLPKEAFHD 125

Query: 121 ----------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                        +  P  +KP  GGS+ G+  +++ + +P  L+  + + + D+ LIE+
Sbjct: 126 LGAAALTARITERLGLPLFVKPRAGGSAFGVSRVERAEQLPEALM--ACFAYHDEALIER 183

Query: 171 YVDGIELTCGV--MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
            V G E+  GV  +G+    +  + +     Y Y  +Y+        PA+I     +E  
Sbjct: 184 LVTGTEIAVGVADLGEGPFALPAVEIAAEGLYDYTARYTPGAVEFHHPARISPAAAEEAA 243

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           R+A  AH+ +G R +SR+D +      +V  LE NV PGMT  S +P     AG  F + 
Sbjct: 244 RVAVAAHRTLGLRDLSRTDAIVTT-EGEVVVLETNVAPGMTLTSTYPMALEAAGLGFGDF 302

Query: 289 LLWMVEDA 296
              +   A
Sbjct: 303 CRDLAAAA 310


>gi|330829945|ref|YP_004392897.1| D-alanine--D-alanine ligase [Aeromonas veronii B565]
 gi|328805081|gb|AEB50280.1| D-alanine--D-alanine ligase [Aeromonas veronii B565]
          Length = 329

 Score =  253 bits (648), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 84/325 (25%), Positives = 140/325 (43%), Gaps = 33/325 (10%)

Query: 3   VLMGGISSEREVSLSSGKACASAL-EDAGFKVSQIDV-----------------DRSVGL 44
           +L GG  SE EVSL S       L   +G +V+++++                 D+ +  
Sbjct: 8   LLCGGGGSEHEVSLRSANFLEQQLGLLSGVEVTRVEMFADRWLSADGRECKLGLDKLLSF 67

Query: 45  VLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCG 104
                  D     +HG  GE G +Q+ LEL  +PY      AS +  +K+ +K  +S+ G
Sbjct: 68  DSVARPVDYVVPCIHGYPGETGDLQSFLELAGLPYLGCDAEASKICFNKISTKLWLSAIG 127

Query: 105 VPVCPSILVNRFTMDSQHLISP------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS 158
           +P  P + +      +               IK    GSS+G      +  +   +  + 
Sbjct: 128 IPNTPYLFLTEQNEAALAEAKAALAKWGKVFIKAASQGSSVGCYSASNEADLVKGI--AD 185

Query: 159 SWNHGDQLLIEQYVDGIELTCGV--MGDA--SLDVTEIAVPKSDFYSYELKYSSLNSTH- 213
           ++ + +Q+LIE+ V   EL   V   GD   +    EI VP+  FY+YE KYSS + T  
Sbjct: 186 AFGYSEQVLIEKAVKPRELEVAVYQYGDELVATYPGEICVPQDKFYTYEEKYSSASHTET 245

Query: 214 -VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
            +    +       +   A  A + +    +SR DF       ++   EIN  PGMT +S
Sbjct: 246 ALRAEGLTQAQADAIHEYALKAFRQLKLTHLSRIDFFLTE-EGEILLNEINTFPGMTSIS 304

Query: 273 IFPEMAAYAGYSFRELLLWMVEDAS 297
           +FP++  + G+ F + L  ++  AS
Sbjct: 305 MFPKLLEHHGHRFSDYLEQILRKAS 329


>gi|148274154|ref|YP_001223715.1| putative D-alanine-D-alanine ligase [Clavibacter michiganensis
           subsp. michiganensis NCPPB 382]
 gi|147832084|emb|CAN03057.1| putative D-alanine-D-alanine ligase [Clavibacter michiganensis
           subsp. michiganensis NCPPB 382]
          Length = 321

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 102/308 (33%), Positives = 160/308 (51%), Gaps = 18/308 (5%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62
           VL GGIS ER+VSL SG+  A AL  AG + S  D D ++   L    P + + VLHG  
Sbjct: 11  VLAGGISHERDVSLRSGRRVADALRAAGVQASLRDPDATLLDFLRDTPPAVVWPVLHGAS 70

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-- 120
           GEDG +  +LEL  +PY  S   ++ L+ DK  +K +  S G+    S+ + + T     
Sbjct: 71  GEDGALLGLLELAGVPYVGSSARSARLAWDKPTAKAIAESAGIRTPRSVTLPKDTFRELG 130

Query: 121 --------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                      +  PY +KP +GGS+ G+ ++   +++P  ++   ++ +GD  LIEQ V
Sbjct: 131 AAAVLRLVTEAVPAPYAVKPARGGSAQGVTIVTDAEALPRAMVD--AYTYGDVALIEQLV 188

Query: 173 DGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           +G E+  G++    G  +L  TEI VP S  Y YE +Y++  +    PA+I  D      
Sbjct: 189 EGTEVAIGILDTGDGPEALPATEI-VPTSGVYGYEARYNAGLTRFFTPARISPDANAAAS 247

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
             A   H+A+G   +SR D + D    + +++E+NV PG+T  S+ P+  A AG    +L
Sbjct: 248 AAAIGIHRALGIGQMSRVDIIIDAA-GEPWFIEVNVIPGLTETSLLPQGLAAAGVEVGDL 306

Query: 289 LLWMVEDA 296
              + E A
Sbjct: 307 YRRLAEAA 314


>gi|320528246|ref|ZP_08029409.1| D-ala D-ala ligase [Solobacterium moorei F0204]
 gi|320131371|gb|EFW23938.1| D-ala D-ala ligase [Solobacterium moorei F0204]
          Length = 401

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 93/368 (25%), Positives = 155/368 (42%), Gaps = 78/368 (21%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------------------- 40
           +AV  GG S E EVS+ S      AL+   + V  + V +                    
Sbjct: 5   IAVFFGGESVEHEVSIISAHQAIEALDKNKYNVIPVYVSKERKLYVSDLLKDISNYKDLK 64

Query: 41  --------------SVGLVLAHLKP-----------DLAFNVLHGNFGEDGLVQAILELL 75
                            +V+  +KP           D+A  V+HG  GEDG +Q   E+L
Sbjct: 65  HLISQCTQVSITSEDNRVVIRPVKPSLFGPKELGTIDVAIPVMHGTNGEDGTIQGFFEML 124

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ--------HLISPP 127
           ++PY    +  +A+  DK+  K V++   +P+     V    MD+         H +  P
Sbjct: 125 KVPYAGCDLYGAAIGQDKVLQKNVLNDNNLPITNWFWVYGSEMDTHQSEILDKVHRLIYP 184

Query: 128 YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDA- 185
            +IKP + GSS+GI +   D+          +  + ++++ E+ V    E+ C V+GD+ 
Sbjct: 185 VIIKPARTGSSVGISIAHNDEEYLA--CFDEARQYDEKIITEKVVKPMREINCSVVGDSY 242

Query: 186 --SLDVTEIA--VPKSDFYSYELKY-------------SSLNSTHVLPAKIPLDIYKEVQ 228
                V E    V + +  S+  KY                ++  ++PA +  +  + +Q
Sbjct: 243 SCVASVLEEVSSVSQDELLSFSDKYLGGSKSAKSEGSKGMASTARIVPAPLTDEQTRLIQ 302

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           +LA    + +G  G+ R DFL D  ++KV+  EIN  PG    S+   +   AG SF EL
Sbjct: 303 QLAKETFRVLGTSGVCRIDFLMDADTKKVYVNEINTIPG----SLAFYLWKAAGVSFSEL 358

Query: 289 LLWMVEDA 296
           +  +VE A
Sbjct: 359 MDKLVELA 366


>gi|88854490|ref|ZP_01129157.1| D-alanine--D-alanine ligase [marine actinobacterium PHSC20C1]
 gi|88816298|gb|EAR26153.1| D-alanine--D-alanine ligase [marine actinobacterium PHSC20C1]
          Length = 316

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 102/308 (33%), Positives = 157/308 (50%), Gaps = 18/308 (5%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62
           VL GGIS ER+VSL SG+  A  L   G  V   D D ++   L   KPD+ +  LHG  
Sbjct: 10  VLAGGISHERDVSLRSGRRVADGLLAQGKDVELRDPDATLLPYLRDSKPDVVWPALHGAS 69

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---- 118
           GEDG ++ +L+L+ IPY  S   A+ L+ DK  +K +VS  GV    SI ++R +     
Sbjct: 70  GEDGALRGLLDLIGIPYVGSRADAARLAWDKPTAKSLVSRVGVRTPLSIALSRDSFRELG 129

Query: 119 ------DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                 +    +S   V+KP +GGS+ G+ ++     +P  ++   ++N+ D  LIEQ +
Sbjct: 130 AHSILDELADELSGDLVVKPAQGGSAQGVSIVTDRSDLPSAMVN--AYNYCDVALIEQRI 187

Query: 173 DGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
            G+E+  GV+    G  +L   EI  P    Y++E +Y++  +    PA+I         
Sbjct: 188 TGVEIAIGVLDSGMGAVALPAVEID-PVGGAYTFEARYNAGQTRFYTPARISGADADRAA 246

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
             A  AH A+G R +SR D + D      ++LE NV PG+T  SIFP+    AG+    +
Sbjct: 247 EAALAAHSALGLRHLSRVDMIVDGA-GTPWFLEANVLPGLTETSIFPQALVAAGHDLGRV 305

Query: 289 LLWMVEDA 296
              + + A
Sbjct: 306 YAALADAA 313


>gi|225011531|ref|ZP_03701969.1| D-alanine--D-alanine ligase [Flavobacteria bacterium MS024-2A]
 gi|225004034|gb|EEG42006.1| D-alanine--D-alanine ligase [Flavobacteria bacterium MS024-2A]
          Length = 328

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 87/321 (27%), Positives = 152/321 (47%), Gaps = 34/321 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           + V+ GG +SE ++SL SGK     L+ + ++V  I ++ +  +                
Sbjct: 7   LGVVCGGFTSEFQISLLSGKTVFDNLDRSLWEVFLITINSNEWVANDDNGNHYSVSKGDF 66

Query: 52  -----------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
                      D+ FN +HG  GE+G + A+ ELL IP++      SAL+ +K     V+
Sbjct: 67  TLQIGNDIVFLDVIFNSIHGAPGENGQLAALWELLNIPFSSCDSYTSALTYNKRDCLSVL 126

Query: 101 SSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
               +P      ++R         +  +  P  +K  + GSS G+  +KK  ++   L +
Sbjct: 127 REINIPTAKHFSIDRNDKIDLEKIEKAVGFPCFVKANRAGSSFGVFKVKKKSNLEQALQK 186

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVM---GD-ASLDVTEIAVPKSDFYSYELKYSSLNST 212
             ++    Q++IE  ++G E++ GV    GD   L VTEI   +++F+ Y  KY    S 
Sbjct: 187 --AFQEDSQVIIESALEGREVSVGVAKLRGDIKVLPVTEIIT-ENEFFDYAAKYE-GKSQ 242

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
            + PA+IP++  +EV++ +   +  +G +G+ RS+F+F  +      LEIN  PG T  S
Sbjct: 243 EITPAQIPIEWKEEVEKRSKEIYHKLGLKGVVRSEFIF--VDGVPHLLEINTVPGFTQKS 300

Query: 273 IFPEMAAYAGYSFRELLLWMV 293
           I P+ A   G    E    ++
Sbjct: 301 IIPQQALAMGIELSEFFNLLL 321


>gi|289746785|ref|ZP_06506163.1| D-alanyl-alanine synthetase A [Mycobacterium tuberculosis 02_1987]
 gi|289687313|gb|EFD54801.1| D-alanyl-alanine synthetase A [Mycobacterium tuberculosis 02_1987]
          Length = 363

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 87/323 (26%), Positives = 143/323 (44%), Gaps = 65/323 (20%)

Query: 5   MGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD------------ 52
            GG S+E  +S  S  +    L+   F V  + +  +   VL    PD            
Sbjct: 20  FGGRSNEHAISCVSAGSILRNLDSRRFDVIAVGITPAGSWVLTDANPDALTITNRELPQV 79

Query: 53  -----------------------------------LAFNVLHGNFGEDGLVQAILELLEI 77
                                              + F VLHG +GEDG +Q +LEL  +
Sbjct: 80  KSGSGTELALPADPRRGGQLVSLPPGAGEVLESVDVVFPVLHGPYGEDGTIQGLLELAGV 139

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQ--HLISPPYVIKPL 133
           PY  +G+LASA+ MDK  +K+++++ G+PV    ++   R T+  Q    +  P  +KP 
Sbjct: 140 PYVGAGVLASAVGMDKEFTKKLLAADGLPVGAYAVLRPPRSTLHRQECERLGLPVFVKPA 199

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG--DASLDVT- 190
           +GGSS+G+  +     +P  +  + +  H  ++++E  + G EL CGV+   D +L+ + 
Sbjct: 200 RGGSSIGVSRVSSWDQLPAAV--ARARRHDPKVIVEAAISGRELECGVLEMPDGTLEAST 257

Query: 191 --EIAVP-----KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
             EI V      +  FY +  KY    +   +PAK+   + + +++LA  A  AI CRG+
Sbjct: 258 LGEIRVAGVRGREDSFYDFATKYLDDAAELDVPAKVDDQVAEAIRQLAIRAFAAIDCRGL 317

Query: 244 SRSDFLFDPLSRKVFWLEINVQP 266
           +R DF            EIN  P
Sbjct: 318 ARVDFFLT--DDGPVINEINTMP 338


>gi|295106320|emb|CBL03863.1| D-alanine--D-alanine ligase [Gordonibacter pamelaeae 7-10-1-b]
          Length = 330

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 97/326 (29%), Positives = 154/326 (47%), Gaps = 38/326 (11%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG S ERE SL+SGK   +ALE+AG KV  +D    +   L   +PD+ ++ LHG
Sbjct: 5   VAVLMGGASFEREFSLASGKNVCAALEEAGHKVVPLDTTADLVPTLRTERPDVCYSALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS-------SCGVPVCP-SIL 112
             GEDG +Q++LE L+IP+  S       + +K      ++          +   P  I 
Sbjct: 65  KHGEDGTIQSLLEFLDIPFVGSPSHVCHRTWNKDSMHYELATYRAITGDAPIASWPQGIY 124

Query: 113 VNRFTMDSQHLI------------SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160
           + R                       P  +KP  GGS++G+  +     +   +L + S+
Sbjct: 125 LARDAFKDMGAATALDLVQERVIGGYPVAVKPAHGGSAMGVHRVDSVDELGEAILDALSF 184

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHV-- 214
              + ++IEQ+V+G+E+   V+G      +L   EI VPK  F+  E +       ++  
Sbjct: 185 --DEAVVIEQWVEGVEMAVSVLGTGWDAYALPPVEI-VPKQGFFGTEARMEPGAVQYIAP 241

Query: 215 -LPAKIPLD------IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPG 267
             PA +  D      I  E++R A   ++A   R ++R D ++D    +VF  E+NV PG
Sbjct: 242 VRPASLSDDEGDAQAIRAEIERAALEVYRAYNARDLARVDLIWDGAQARVF--EVNVSPG 299

Query: 268 MTPVSIFPEMAAYAGYSFRELLLWMV 293
           M   S+FP     AG S   +L  +V
Sbjct: 300 MAERSLFPAACEAAGLSLSSVLNELV 325


>gi|330719424|ref|ZP_08314024.1| D-alanyl-alanine synthetase A [Leuconostoc fallax KCTC 3537]
          Length = 377

 Score =  253 bits (647), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 89/347 (25%), Positives = 155/347 (44%), Gaps = 56/347 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAG-FKVSQI---------DVDRS--------- 41
           +A++ GG SSE +VS  S +   +A+   G + V+           D D S         
Sbjct: 5   VALVFGGNSSEHDVSKRSAENIYNAIMATGKYDVTLFSIAQNGYFLDPDASRRIFEGEDE 64

Query: 42  -------------------VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
                              +  +    + D+ F V+HGN GEDG +Q +  LL  P+  +
Sbjct: 65  QMVVDEFMAKVDEKDPLARIKAISQAGQFDIFFPVVHGNLGEDGTLQGLFRLLNKPFVGA 124

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILV------NRFTMDSQHLISPPYVIKPLKGG 136
            +   A+S DK+ +K++++  G+     I+V      N    D +  +     +K    G
Sbjct: 125 PLRGHAVSFDKVLTKELLTVNGIRNTKYIVVSPESVDNWRWSDVKTQLGDIVFVKAANQG 184

Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIA-- 193
           SS+GI  +  +      L  S  +++  ++LIE+ V G  EL  GV+G+    V+ I   
Sbjct: 185 SSVGISRVTNELEYQRALQDSFQYDY--KVLIEEAVKGPRELEVGVIGNEKPIVSVIGAH 242

Query: 194 -VPKSD----FYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
            VP       +Y Y  K+   +S    +PAK+  ++ +EV+ +A  A+Q +  RG +R D
Sbjct: 243 TVPNQGDGDAWYDYSNKFVDNSSVLFEIPAKLTPEVTQEVKDMALKAYQVLDLRGEARMD 302

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           FL D  +   +  E N  PG T +S+FP +         +L+  +++
Sbjct: 303 FLLDE-NGIPYLGEPNTLPGFTNMSLFPRLWDDTNMDNAQLVDELIQ 348


>gi|215404965|ref|ZP_03417146.1| D-alanyl-alanine synthetase A [Mycobacterium tuberculosis 02_1987]
          Length = 345

 Score =  253 bits (646), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 87/323 (26%), Positives = 143/323 (44%), Gaps = 65/323 (20%)

Query: 5   MGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD------------ 52
            GG S+E  +S  S  +    L+   F V  + +  +   VL    PD            
Sbjct: 2   FGGRSNEHAISCVSAGSILRNLDSRRFDVIAVGITPAGSWVLTDANPDALTITNRELPQV 61

Query: 53  -----------------------------------LAFNVLHGNFGEDGLVQAILELLEI 77
                                              + F VLHG +GEDG +Q +LEL  +
Sbjct: 62  KSGSGTELALPADPRRGGQLVSLPPGAGEVLESVDVVFPVLHGPYGEDGTIQGLLELAGV 121

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQ--HLISPPYVIKPL 133
           PY  +G+LASA+ MDK  +K+++++ G+PV    ++   R T+  Q    +  P  +KP 
Sbjct: 122 PYVGAGVLASAVGMDKEFTKKLLAADGLPVGAYAVLRPPRSTLHRQECERLGLPVFVKPA 181

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG--DASLDVT- 190
           +GGSS+G+  +     +P  +  + +  H  ++++E  + G EL CGV+   D +L+ + 
Sbjct: 182 RGGSSIGVSRVSSWDQLPAAV--ARARRHDPKVIVEAAISGRELECGVLEMPDGTLEAST 239

Query: 191 --EIAVP-----KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
             EI V      +  FY +  KY    +   +PAK+   + + +++LA  A  AI CRG+
Sbjct: 240 LGEIRVAGVRGREDSFYDFATKYLDDAAELDVPAKVDDQVAEAIRQLAIRAFAAIDCRGL 299

Query: 244 SRSDFLFDPLSRKVFWLEINVQP 266
           +R DF            EIN  P
Sbjct: 300 ARVDFFLT--DDGPVINEINTMP 320


>gi|312883382|ref|ZP_07743108.1| D-alanyl-alanine synthetase A [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309368998|gb|EFP96524.1| D-alanyl-alanine synthetase A [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 334

 Score =  253 bits (646), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 88/327 (26%), Positives = 150/327 (45%), Gaps = 34/327 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDVDRS------------------ 41
           + +L GG ++E E+SL S     S LE  + F V+++++  +                  
Sbjct: 6   ILLLCGGGAAEHEISLISADFVQSQLELTSEFDVTRVEIKENGWFTCSGQTANIDTNSGT 65

Query: 42  VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           + +       D     +HG  GE G +QA LEL  +PY   G  AS  S +K+ SK    
Sbjct: 66  LQINGESHVIDFVVPCIHGFPGETGDIQAFLELTGLPYLGCGSEASTNSFNKITSKLWYD 125

Query: 102 SCGVPVCPSILVNRFTMDSQHLISPPY------VIKPLKGGSSLGIIVIKKDQSIPLDLL 155
           + G+P  P I ++     +  L            +K  + GSS+G   ++++  +   L 
Sbjct: 126 ALGIPNTPYIFLSENNDRALELAKESLKKWGAIFVKAARQGSSVGCYHVRQEAELLNAL- 184

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDASL----DVTEIAVPKSDFYSYELKYSSLN- 210
              ++++ DQ+LIEQ V   EL         +       E+  P+  FYSYE KYS  + 
Sbjct: 185 -EGAFSYSDQVLIEQAVKPRELEVAAYEYQGVLYITKPGEVIAPQDKFYSYEEKYSGTSE 243

Query: 211 STHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
           +  V+ A  +  D    +++ A    + +  R +SR DF   P   +V+  E+N  PGMT
Sbjct: 244 TQTVVEATNLTADQQALIRQSAEKVFKHMRLRHLSRIDFFLTP-DGQVYLNEVNTFPGMT 302

Query: 270 PVSIFPEMAAYAGYSFRELLLWMVEDA 296
           P+S+FP+M  +  ++F E +   V+ +
Sbjct: 303 PISMFPKMLQHNEHNFAEFMADCVQSS 329


>gi|5912563|emb|CAB56200.1| D-alanine-D-alanine ligase [Prochlorococcus marinus subsp. pastoris
           str. PCC 9511]
          Length = 310

 Score =  252 bits (645), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 81/270 (30%), Positives = 137/270 (50%), Gaps = 16/270 (5%)

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           +    +     D+ F +LHG  GEDG +  +L+  + P    GIL SAL MDK+  K++ 
Sbjct: 42  NFLNTIEFQGIDIWFPLLHGVNGEDGAIHGLLKFTQKPIVGGGILGSALGMDKILMKKIF 101

Query: 101 SSCGVPVCPSI-----------LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS 149
           S   +P    +           + N  +++    +  P  +KP   GSSLGI   K    
Sbjct: 102 SHLEIPQVNYLDIQNQDLSDDKVKNNLSVEIIEKLKLPVFVKPANSGSSLGISKAKTRSE 161

Query: 150 IPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK--SDFYSYELKYS 207
           I   L +  +W    +++IE+ +D  EL CG++G+  L  +EI      +D+Y Y+ KYS
Sbjct: 162 IIKALQK--AWEIDSRIVIEEGLDVRELECGIIGNLKLTASEIGEVSYSTDWYDYDSKYS 219

Query: 208 SLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPG 267
             N   ++PA I   I ++++ +A  + +A+   G +R DF  + +S K+F  EIN  PG
Sbjct: 220 MDN-QIIIPADIDSQISEQIKDIAIRSCRALNIYGFARVDFFLEKISNKIFLNEINTIPG 278

Query: 268 MTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
            T  S+FP +   +G +  +L+  +V+ +S
Sbjct: 279 FTSKSMFPMLWNASGLNIDQLVAKLVDISS 308


>gi|91226137|ref|ZP_01261027.1| D-alanylalanine synthetase [Vibrio alginolyticus 12G01]
 gi|91189371|gb|EAS75649.1| D-alanylalanine synthetase [Vibrio alginolyticus 12G01]
          Length = 329

 Score =  252 bits (645), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 82/327 (25%), Positives = 140/327 (42%), Gaps = 34/327 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDVD------------------RS 41
           + +L GG SSE E+SL S       L       V+++++                   + 
Sbjct: 5   ILLLCGGGSSEHEISLLSANFVEQQLNLIEDVHVTRVEIKNEGWMTNQGELVYLDLNTKQ 64

Query: 42  VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +    ++   D     +HG  GE G +Q++ E+  IPY   G  AS+ S +K+ SK    
Sbjct: 65  LCSSESNQTIDFIVPCIHGFPGETGDIQSLFEIAGIPYLGCGPEASSNSFNKITSKLWYD 124

Query: 102 SCGVPVCPSILVNRFTMDSQHLIS------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
           + G+P  P + + R   ++               +K  + GSS+G   +     +   + 
Sbjct: 125 AIGIPNTPYLFLTRNDEEAHVQAHKAFEKWGKVFVKAARQGSSVGCYSVTGKDKLSNAV- 183

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYSSLNS 211
            + ++   DQ+L+E+ V   EL       +  L +T   E+  P   FYSY+ KYSS + 
Sbjct: 184 -NDAFGFSDQVLVEKAVKPRELEVAAYEMNGQLHITKPGEVIAPDGAFYSYDEKYSSSSH 242

Query: 212 --THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
             T V    +       +Q  +    + +  R +SR DF       +++  E+N  PGMT
Sbjct: 243 SLTEVEAKNLTQIQLDSIQHASETVFKQMNLRHLSRIDFFLTE-DDEIYLNEVNTFPGMT 301

Query: 270 PVSIFPEMAAYAGYSFRELLLWMVEDA 296
           P+S+FP+M    G+ F E L   +  A
Sbjct: 302 PISMFPKMLQNNGHKFHEFLEDCINSA 328


>gi|320158619|ref|YP_004190997.1| D-alanine--D-alanine ligase [Vibrio vulnificus MO6-24/O]
 gi|319933931|gb|ADV88794.1| D-alanine-D-alanine ligase [Vibrio vulnificus MO6-24/O]
          Length = 331

 Score =  252 bits (645), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 82/327 (25%), Positives = 140/327 (42%), Gaps = 36/327 (11%)

Query: 3   VLMGGISSEREVSLSSGKACASAL-EDAGFKVSQIDVDRSVGLVLAH------------- 48
           +L GG SSE E+SL S +     L       V ++++                       
Sbjct: 7   LLCGGGSSEHEISLLSSEYLQQQLGLIENVNVLKVEIKNEGWFDQKERLVYLDIHTKSVK 66

Query: 49  -------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
                  +  D     +HG  GE G +Q++ EL  IPY   G  AS+ S +K+ SK    
Sbjct: 67  SDEFNESIHIDFIVPCIHGFPGETGDIQSLFELASIPYLGCGPEASSNSFNKITSKLWYD 126

Query: 102 SCGVPVCPSILVNRFTMDSQHLISP------PYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
           + G+P  P + +     +S  L            +K  + GSS+G   +   + +   + 
Sbjct: 127 AIGIPNTPYLFLTENNEESHQLSREAFDKWGKLFVKAARQGSSVGCYSVTNIEQLSDAID 186

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYSSL-- 209
           ++  ++H  Q+L+E+ V   EL       +  L ++   EI  P   FYSY+ KYS+   
Sbjct: 187 KAFGFSH--QVLVEKAVKPRELEVSAYEMNGQLHISKPGEIIAPDGAFYSYDEKYSAGSH 244

Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
           + T V    +       +Q+ +    + +  R +SR DF       +++  E+N  PGMT
Sbjct: 245 SITEVEAKNLTEQQLATIQQCSEKVFRQMNLRHLSRIDFFLT-SEGEIYLNEVNTFPGMT 303

Query: 270 PVSIFPEMAAYAGYSFRELLLWMVEDA 296
            +S+FP+M  + G+ F E L   +E +
Sbjct: 304 KISMFPKMLQHNGHKFHEFLADCIERS 330


>gi|294056599|ref|YP_003550257.1| D-alanine/D-alanine ligase [Coraliomargarita akajimensis DSM 45221]
 gi|293615932|gb|ADE56087.1| D-alanine/D-alanine ligase [Coraliomargarita akajimensis DSM 45221]
          Length = 305

 Score =  252 bits (645), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 99/300 (33%), Positives = 154/300 (51%), Gaps = 12/300 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+ GG+ +EREVSL+SG A A+AL +A F V ++ +D +           + F  LHG
Sbjct: 6   VIVMYGGVGTEREVSLNSGDAIAAAL-EANFPVERLRLDSAELPGTIDAATSIVFPALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
           +FGEDG +QA+++   I Y  SG  AS L MDK R+K++     + V  ++  +   +  
Sbjct: 65  SFGEDGQLQALMDAAGIEYCGSGAAASRLCMDKSRTKELARELNIRVPEAVTFSGTAVPL 124

Query: 121 QHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
                  +    VIKP   GSS+G+   +    + + L Q     H    L EQ + G E
Sbjct: 125 ADALIDQLGSSLVIKPTDQGSSVGLFFTEHRSELGVTLSQI----HQGNWLAEQRIRGRE 180

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           LT GV+   ++ V EI +  S  Y Y  KY+  ++ +  PA++   +  ++Q+ A   + 
Sbjct: 181 LTVGVLHGKAMGVVEI-ISSSGVYDYAAKYTPGSTEYRFPAELEASVTAQIQQQAEQIYA 239

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           A  CR  +R DFL D      ++LE+N  PG+T  S+ P+ AA  GY F  L   +V  A
Sbjct: 240 ACDCRDFARIDFLLD--GNAPYFLEVNTLPGLTATSLLPKSAACVGYDFESLARQLVSAA 297


>gi|300870859|ref|YP_003785730.1| D-alanine-D-alanine ligase [Brachyspira pilosicoli 95/1000]
 gi|300688558|gb|ADK31229.1| D-alanine-D-alanine ligase [Brachyspira pilosicoli 95/1000]
          Length = 323

 Score =  252 bits (645), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 93/301 (30%), Positives = 152/301 (50%), Gaps = 12/301 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASAL---EDAGFKVSQIDVDR--SVGLVLAHLKPDLAF 55
           +AVL GGIS EREVSL SGK    AL   ++       IDV     +  +L     +  +
Sbjct: 20  IAVLHGGISDEREVSLRSGKNVFEALTSYKELKDSTILIDVKDHYELVEILKKENVEYCY 79

Query: 56  NVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR 115
           N+LHG FGEDG +Q +L+ L I YT    L S+L M+K+ +K++  S  +      L+  
Sbjct: 80  NILHGTFGEDGTIQGLLDCLNIKYTGENTLVSSLCMNKVYTKRIWLSSNISTVDFQLLED 139

Query: 116 FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175
              ++    + P ++KP+  GSS+G+ +IK  +    D +     +  +  L E Y+ G 
Sbjct: 140 AVKNNNISFNFPIILKPISSGSSVGVSLIKTKEEF--DNIVKDIKDIHNYFL-EPYIKGK 196

Query: 176 ELTCGVMGDAS---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
           E+T G++ D     +       PK++ Y Y+ KY+   +   +PAK+  DI K++     
Sbjct: 197 EVTVGLVRDNDDIYVFPILGINPKNEIYDYDAKYTPGKTEMEIPAKLDKDIEKKLIENCK 256

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
            A+  +GC G+ R D +       +  +E+N Q GMT  S  P MA      F +++L++
Sbjct: 257 KAYDVLGCEGLCRIDAIIS-DDGFINLMEVNTQGGMTNTSDIPAMARNINMPFEDVVLYI 315

Query: 293 V 293
           +
Sbjct: 316 L 316


>gi|299143291|ref|ZP_07036371.1| D-alanine--D-alanine ligase [Peptoniphilus sp. oral taxon 386 str.
           F0131]
 gi|298517776|gb|EFI41515.1| D-alanine--D-alanine ligase [Peptoniphilus sp. oral taxon 386 str.
           F0131]
          Length = 389

 Score =  252 bits (644), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 88/364 (24%), Positives = 145/364 (39%), Gaps = 78/364 (21%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           +AV+ GG S E EVS+ +G      ++ + +    + + +    +               
Sbjct: 4   IAVVFGGRSVEHEVSIITGMQIMENMDKSKYNPIPLYITKEGKFLTGDCLKNFSTFKKND 63

Query: 49  ---------------------------------------LKPDLAFNVLHGNFGEDGLVQ 69
                                                   K D  F  LHG +GEDG  Q
Sbjct: 64  FSEAIEVFFKGYTGDSNMYTIKIQKSGLFSKENFGIEVYAKIDAVFPALHGTYGEDGCFQ 123

Query: 70  AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-------DSQH 122
            +LEL+++PY   G++++A+ MDK+  K+V  S  +P+       R          +   
Sbjct: 124 GLLELIQVPYVGCGVMSAAVGMDKVVMKKVFQSENIPMTEYFYFYRDEWKNRDEIIEKAE 183

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGV 181
            +     +KP   GSS+GI      +     +  +   ++  ++++E+ V+   E+   V
Sbjct: 184 KLGYSLFVKPANLGSSVGISKATNREEFVEAVEIAV--HYDRKIIVERAVENPREINAAV 241

Query: 182 M---GDASLDVTEIAVPKSDFYSYELKY--------SSLNSTHVLPAKIPLDIYKEVQRL 230
           M   GD  +   E  +   D   YE KY           N    LPA IP D+  E+++ 
Sbjct: 242 MGYEGDIIVSACEEPIGWKDLLKYEDKYIAGSKGSKGMKNKKKNLPADIPEDVRAEIEKY 301

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A LA +AI   G +R DFL D    KV+  EIN  PG     +       +G SF+EL+ 
Sbjct: 302 AHLAFRAIDGMGDARIDFLLD--GDKVYVNEINTLPGSIAFYL----WEESGISFKELIT 355

Query: 291 WMVE 294
            ++E
Sbjct: 356 RLIE 359


>gi|37676445|ref|NP_936841.1| D-alanyl-alanine synthetase A [Vibrio vulnificus YJ016]
 gi|39930817|sp|Q7ME85|DDL_VIBVY RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|37200987|dbj|BAC96811.1| D-alanine-D-alanine ligase [Vibrio vulnificus YJ016]
          Length = 331

 Score =  252 bits (644), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 82/327 (25%), Positives = 139/327 (42%), Gaps = 36/327 (11%)

Query: 3   VLMGGISSEREVSLSSGKACASAL-EDAGFKVSQIDVDRSVGLVLAH------------- 48
           +L GG SSE E+SL S +     L       V ++++                       
Sbjct: 7   LLCGGGSSEHEISLLSSEYLQQQLGLIENVNVLKVEIKNEGWFDQKERLVYLDIHTKSVK 66

Query: 49  -------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
                  +  D     +HG  GE G +Q++ EL  IPY   G  AS+ S +K+ SK    
Sbjct: 67  SDEFNESIDIDFIVPCIHGFPGETGDIQSLFELAGIPYLGCGPEASSNSFNKITSKLWYD 126

Query: 102 SCGVPVCPSILVNRFTMDSQHLISP------PYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
           + G+P  P + +     +S  L            +K  + GSS+G   +   + +   + 
Sbjct: 127 AIGIPNTPYLFLTENNEESHQLSREAFDKWGKLFVKAARQGSSVGCYSVTNIEQLSDAID 186

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYSSL-- 209
           ++  ++H  Q+L+E+ V   EL       +  L ++   EI  P   FYSY+ KYS+   
Sbjct: 187 KAFGFSH--QVLVEKAVKPRELEVSAYEMNGQLHISKPGEIIAPDGAFYSYDEKYSAGSH 244

Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
           + T V    +       +Q  +    + +  R +SR DF       +++  E+N  PGMT
Sbjct: 245 SITEVEAKNLTEQQLATIQLCSEKVFRQMNLRHLSRIDFFLT-SEGEIYLNEVNTFPGMT 303

Query: 270 PVSIFPEMAAYAGYSFRELLLWMVEDA 296
            +S+FP+M  + G+ F E L   +E +
Sbjct: 304 KISMFPKMLQHNGHKFHEFLADCIERS 330


>gi|269968807|ref|ZP_06182794.1| D-alanine--D-alanine ligase [Vibrio alginolyticus 40B]
 gi|269826584|gb|EEZ80931.1| D-alanine--D-alanine ligase [Vibrio alginolyticus 40B]
          Length = 329

 Score =  252 bits (644), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 82/327 (25%), Positives = 141/327 (43%), Gaps = 34/327 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDVD------------------RS 41
           + +L GG SSE E+SL S       L       V+++++                   + 
Sbjct: 5   ILLLCGGGSSEHEISLLSANFVEQQLNLIEDVHVTRVEIKNEGWMTNQGELVYLDLNTKQ 64

Query: 42  VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +    ++   D     +HG  GE G +Q++ E+  IPY   G  AS+ S +K+ SK    
Sbjct: 65  LCSSESNQTIDFIVPCIHGFPGETGDIQSLFEIAGIPYLGCGPEASSNSFNKITSKLWYD 124

Query: 102 SCGVPVCPSILVNRFTMDSQHLIS------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
           + G+P  P + + R   ++               +K  + GSS+G   + +   +   + 
Sbjct: 125 AIGIPNTPYLFLTRNDEEAHVQAHKAFEKWGKVFVKAARQGSSVGCYSVIEKDKLSNAV- 183

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYSSLNS 211
            + ++   DQ+L+E+ V   EL       +  L +T   E+  P   FYSY+ KYSS + 
Sbjct: 184 -NDAFGFSDQVLVEKAVKPRELEVAAYEMNGQLHITKPGEVIAPDGAFYSYDEKYSSSSH 242

Query: 212 --THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
             T V    +       +Q  +    + +  R +SR DF       +++  E+N  PGMT
Sbjct: 243 SLTEVEAKNLTQVQLDSIQHASETVFRQMNLRHLSRIDFFLTE-DDEIYLNEVNTFPGMT 301

Query: 270 PVSIFPEMAAYAGYSFRELLLWMVEDA 296
           P+S+FP+M    G+ F E L   +  A
Sbjct: 302 PISMFPKMLQNNGHKFHEFLEDCINSA 328


>gi|117619780|ref|YP_856919.1| D-alanyl-alanine synthetase A [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|166198471|sp|A0KKW8|DDL_AERHH RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|117561187|gb|ABK38135.1| D-alanine--D-alanine ligase [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
          Length = 329

 Score =  251 bits (643), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 83/324 (25%), Positives = 138/324 (42%), Gaps = 33/324 (10%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDA-GFKVSQIDV-----------------DRSVGL 44
           +L GG  SE EVSL S       L    G +V+++++                 D+ +  
Sbjct: 8   LLCGGGGSEHEVSLRSANFLEKQLSLLPGVEVTRVEMFADRWLSADGRECKLGLDKLLSF 67

Query: 45  VLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCG 104
                  D     +HG  GE G +Q+ LEL  +PY      AS +  +K+ +K  +S+ G
Sbjct: 68  DSVARPVDYVVPCIHGYPGETGDLQSFLELAGLPYLGCDAEASKICFNKISTKLWLSAIG 127

Query: 105 VPVCPSILVNRFTMDSQHLIS------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS 158
           +P  P + +      +               IK    GSS+G      +  +   +  + 
Sbjct: 128 IPNTPYLFLTEQNDAALSEAKAALAKWGKVFIKAASQGSSVGCYSASNEADLVKGI--AD 185

Query: 159 SWNHGDQLLIEQYVDGIELTCGV--MGDA--SLDVTEIAVPKSDFYSYELKYSSLNSTH- 213
           ++ + +Q+LIE+ V   EL   V   GD   +    EI VP+  FY+YE KYSS + T  
Sbjct: 186 AFGYSEQVLIEKAVKPRELEVAVYQYGDELVATYPGEICVPQDKFYTYEEKYSSASHTET 245

Query: 214 -VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
            +    +       +   A  A + +    +SR DF       ++   EIN  PGMT +S
Sbjct: 246 ALRAEGLTQAQADAIHEYALKAFRQLKLTHLSRIDFFLTE-EGEILLNEINTFPGMTSIS 304

Query: 273 IFPEMAAYAGYSFRELLLWMVEDA 296
           +FP++  + G+ F + L  ++  A
Sbjct: 305 MFPKLLEHHGHRFADYLEQILRKA 328


>gi|197336773|ref|YP_002158133.1| D-alanine--D-alanine ligase [Vibrio fischeri MJ11]
 gi|226696393|sp|B5ETW5|DDL_VIBFM RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|197314025|gb|ACH63474.1| D-alanine--D-alanine ligase [Vibrio fischeri MJ11]
          Length = 330

 Score =  251 bits (642), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 76/328 (23%), Positives = 140/328 (42%), Gaps = 35/328 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAG-FKVSQIDVDRSVGLVLAHL---------- 49
           + +L GG  +E EVSL S K  A  L +   F ++ +++       +             
Sbjct: 4   ILLLCGGGGTEHEVSLVSSKYIAQQLSELDAFDITHLEIKDEGWFHIESGLKYELRSDKT 63

Query: 50  ---------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
                      D     +HG  GE G +Q++L++L IPY      +S  S +K+ SK   
Sbjct: 64  LLSGETVSSPVDYVVPCIHGYPGETGDIQSMLDMLSIPYLGCDAESSTNSFNKITSKLWY 123

Query: 101 SSCGVPVCPSILVNRFTMDSQHLISPP------YVIKPLKGGSSLGIIVIKKDQSIPLDL 154
            + G+P  P + +     ++               +K    GSS+G   +  ++ +   +
Sbjct: 124 DALGIPNTPYLFLTENNEETHQSALAAFKQWGGLFVKAACQGSSVGCYKVTSEEELAQAI 183

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYSSL- 209
             + ++ +  Q+L+E+ V   EL       D  L  T   E+  P   FY+Y+ KY S  
Sbjct: 184 --NGAFGYSQQVLVEKAVKPRELEVAAYEIDGQLFTTAPGEVTAPDGAFYTYDEKYGSGS 241

Query: 210 -NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268
            ++T +    +  +  K + + +      +  + +SR DF       +++  E+N  PGM
Sbjct: 242 HSTTSLDAQNLTEEQVKLIDQYSRKVFTQMKLKDLSRIDFFLT-DDNEIYLNEVNTFPGM 300

Query: 269 TPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           TP+S+FP++  + G  F+  L   V +A
Sbjct: 301 TPISMFPKLLEHNGDCFKTFLQKAVLNA 328


>gi|27366728|ref|NP_762255.1| D-alanyl-alanine synthetase A [Vibrio vulnificus CMCP6]
 gi|32699442|sp|Q8D781|DDL_VIBVU RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|27358295|gb|AAO07245.1| D-alanine--D-alanine ligase [Vibrio vulnificus CMCP6]
          Length = 331

 Score =  251 bits (642), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 83/327 (25%), Positives = 140/327 (42%), Gaps = 36/327 (11%)

Query: 3   VLMGGISSEREVSLSSGKACASAL-EDAGFKVSQIDVDRSVGLVLAH------------- 48
           +L GG SSE E+SL S +     L       V ++++                       
Sbjct: 7   LLCGGGSSEHEISLLSSEYLQQQLGLIENVNVLKVEIKNEGWFDQKERLVYLDIHTKSVK 66

Query: 49  -------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
                  +  D     +HG  GE G +Q++ EL  IPY   G  AS+ S +K+ SK    
Sbjct: 67  SDEFNESIHIDFIVPCIHGFPGETGDIQSLFELAGIPYLGCGPEASSNSFNKITSKLWYD 126

Query: 102 SCGVPVCPSILVNRFTMDSQHLISP------PYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
           + G+P  P + +     +S  L            +K  + GSS+G   + K + +   + 
Sbjct: 127 AIGIPNTPYLFLTENNEESHQLSREAFDKWGKLFVKAARQGSSVGCYSVTKIEQLSDAID 186

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYSSL-- 209
           ++  ++H  Q+L+E+ V   EL       +  L ++   EI  P   FYSY+ KYS+   
Sbjct: 187 KAFGFSH--QVLVEKAVKPRELEVSAYEMNGQLHISKPGEIIAPDGAFYSYDEKYSAGSH 244

Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
           + T V    +       +Q  +    + +  R +SR DF       +++  E+N  PGMT
Sbjct: 245 SITEVEAKNLTEQQLATIQLCSEKVFRQMNLRHLSRIDFFLT-SEGEIYLNEVNTFPGMT 303

Query: 270 PVSIFPEMAAYAGYSFRELLLWMVEDA 296
            +S+FP+M  + G+ F E L   +E +
Sbjct: 304 KISMFPKMLQHNGHKFHEFLADCIERS 330


>gi|239944155|ref|ZP_04696092.1| D-alanine--D-alanine ligase [Streptomyces roseosporus NRRL 15998]
 gi|239990610|ref|ZP_04711274.1| D-alanine--D-alanine ligase [Streptomyces roseosporus NRRL 11379]
 gi|291447625|ref|ZP_06587015.1| D-alanine-D-alanine ligase [Streptomyces roseosporus NRRL 15998]
 gi|291350572|gb|EFE77476.1| D-alanine-D-alanine ligase [Streptomyces roseosporus NRRL 15998]
          Length = 320

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 101/306 (33%), Positives = 150/306 (49%), Gaps = 14/306 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VL GG S ER  SL+SGK  A AL   GF    ID       + +  K D+A   LHG
Sbjct: 11  VGVLYGGDSPERAGSLASGKTAADALVSEGFNTLLIDTAEP-QAIESIQKIDVALIALHG 69

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV------N 114
             GEDG +Q +LE+L +PYT SG+LASA+ M K   KQ++SS G+     I +      +
Sbjct: 70  PGGEDGKIQGLLEILGVPYTGSGVLASAVGMHKPTFKQLISSHGLDTPKWITLDPSLTSD 129

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
             +   +  +  P  IKP  GG SLG  + +        L   +  ++  + L+E+YV G
Sbjct: 130 EMSKVVESHVGWPVFIKPSAGGGSLGAGIGRSPSDFAHMLADLNRQDY-LEYLVEEYVPG 188

Query: 175 IELTCGVMGD----ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
              + GV+       +L V ++     +FY Y  K+         P+ +P D+ + +Q  
Sbjct: 189 RPCSVGVIETSGRPEALPVHDVET-DREFYDYAAKHDPSKRIENCPSILPKDVTERLQEE 247

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A   H   G  G+SR DF+ D   R V  LEIN  PG++ +     MA  AG S+  L+ 
Sbjct: 248 AVRIHMLTGAHGVSRVDFIVDDNGRSV-ILEINTVPGLSDMGNLATMAKAAGMSYPALVT 306

Query: 291 WMVEDA 296
            +++ A
Sbjct: 307 AVLKTA 312


>gi|288779631|dbj|BAI70383.1| D-alanyl-D-alanine ligase [Streptomyces lavendulae subsp.
           lavendulae]
          Length = 345

 Score =  250 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 103/346 (29%), Positives = 158/346 (45%), Gaps = 53/346 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           + +L GG S ER+VSL+SG + A AL + G +V  +D      ++   L+P         
Sbjct: 3   IVILCGGESPERDVSLASGSSVARALLERGHEVLLVDPAAEEPVLAGPLRPGDVVDGFEV 62

Query: 52  ---------------------------------DLAFNVLHGNFGEDGLVQAILELLEIP 78
                                            D+ F  LHG +GEDG VQ  LE   + 
Sbjct: 63  GKEPPAGHERHGLRRRMAAAFDGGPALALLRDADVVFTALHGGWGEDGWVQERLEAAGVR 122

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI-----SPPYVIKPL 133
           +T +   A A +  K R++ V+++ GVPV    L    T      +     + P V KP+
Sbjct: 123 FTGADSTACAAAWHKERAQAVLAAAGVPVTERALWPAGTDGVPQEVRRLVAAGPVVAKPV 182

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
             GSS+   V + D    L+ L       G +LL+E ++ G E T GV+G   L V EI 
Sbjct: 183 ADGSSV--SVHRADSLAELERLAPEMRADGAELLVEPFLPGREFTVGVIGGQVLPVIEIE 240

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR--GISRSDFLFD 251
           +  +  + Y  KY     + V PA IP +    +Q+LA  AH+A+G      SR+DF  D
Sbjct: 241 LS-TPLFDYAAKYQPGAVSEVCPALIPEEFASRLQQLALRAHEALGFGPHTYSRTDFRCD 299

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
             + +   LE+N  PG+T  S+ P  A+ AG+++ +L   +V  A+
Sbjct: 300 A-TGEPMCLEVNALPGLTATSLLPLAASGAGWTYADLAERIVSLAT 344


>gi|315937115|gb|ADU56122.1| hypothetical protein CA915-1 [uncultured organism CA915]
          Length = 329

 Score =  250 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 96/311 (30%), Positives = 148/311 (47%), Gaps = 18/311 (5%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62
           VL GG+S EREVSL SG+    AL      V   DV   +   L    P +   VL+G  
Sbjct: 14  VLAGGLSPEREVSLQSGRRLVDALRQLDVDVEFGDVGTDLTETLMTDPPSVVLLVLYGIP 73

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-- 120
           GEDG V+ +LEL  +PY  +   A  L+ DK  +K ++   G+    S+ ++        
Sbjct: 74  GEDGTVREVLELAGVPYVGASAEACRLAFDKPLAKALLVRAGLRTPASVTLSSNAFHDLG 133

Query: 121 --------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                      +  P  +KP  GGS+ G+  ++K   +P  L+  + + H D  LIE+ V
Sbjct: 134 AAPLMSLILKRLGLPVFVKPRAGGSAFGVTRVRKADELPAALM--ACFAHHDTALIERAV 191

Query: 173 DGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
            G+E+  GV+    G  ++   EI VP+   Y Y   YS+  +    PA++    ++ V 
Sbjct: 192 PGVEVAVGVLDLGDGPVAMPPVEI-VPRYGVYDYAAHYSAGATDFFCPARLSERAHRAVA 250

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
             A  AH+A+  R +SR+D + D    +VF LE  V PG+T  S F    A  GY+F ++
Sbjct: 251 EAAVTAHRALRLRDLSRTDLIVDK-DDQVFVLETAVAPGLTDTSTFAMGIAAQGYAFGDV 309

Query: 289 LLWMVEDASCL 299
              + + A   
Sbjct: 310 WRRLAQIAEAR 320


>gi|256545629|ref|ZP_05472987.1| D-alanine--D-alanine ligase [Anaerococcus vaginalis ATCC 51170]
 gi|256398706|gb|EEU12325.1| D-alanine--D-alanine ligase [Anaerococcus vaginalis ATCC 51170]
          Length = 348

 Score =  250 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 71/336 (21%), Positives = 141/336 (41%), Gaps = 47/336 (13%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS--------------------- 41
           +L GG SSE E++L S    +  L+   + +  + +D+                      
Sbjct: 6   LLCGGPSSEHEIALRSALNISKNLDKNKYNLKIVYIDKKGRFSKAFDFINTDDEFELVKE 65

Query: 42  -------------VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
                        + L     +  +    +HG +GEDG +Q  L+ ++  Y  +G+L+S+
Sbjct: 66  CKENILESISDFLLELKDKDKENTIIIPCVHGTYGEDGTIQGFLDAIDTAYIGNGLLSSS 125

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMD------SQHLISPPYVIKPLKGGSSLGII 142
           + MDK+ +  +     +     +  N  + D       +  I  P ++KP   GSS+G+ 
Sbjct: 126 VCMDKVTANDIFEKNKLKQARYLYANEESFDLDFAKKCEEYIKFPMIVKPSANGSSVGVN 185

Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA--VPKSDFY 200
             +    +        S  + +++L+E+ + G E+   ++GD  L  ++    V    F 
Sbjct: 186 KAENIDELLK--FGKESLKYDEKILVEEAIIGQEVEIAIIGDNKLIASKPGAYVTDHIFL 243

Query: 201 SYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260
            Y+ KY   ++  +LP  +   + K++   A   ++A  C+G +R D        + +  
Sbjct: 244 DYDAKYFDKSTKEMLPYPMDEKLEKDLLEFAKKCYKACNCQGFARVDIFL--KDNEFYIN 301

Query: 261 EINVQPGMTPVSIFPEMAAYA-GYSFRELLLWMVED 295
           EIN  PG TP S F  +   +    F ++L  ++E+
Sbjct: 302 EINTFPGFTPTSFFARLCKISFDLEFSQILDMLIEE 337


>gi|262158758|ref|ZP_06029871.1| D-alanine--D-alanine ligase [Vibrio cholerae INDRE 91/1]
 gi|262029331|gb|EEY47982.1| D-alanine--D-alanine ligase [Vibrio cholerae INDRE 91/1]
          Length = 318

 Score =  250 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 86/313 (27%), Positives = 142/313 (45%), Gaps = 34/313 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDVDR------------------S 41
           + +L GG SSE E+SL S       LE    F V ++++ +                  +
Sbjct: 6   ILLLCGGGSSEHEISLVSANYIQQQLELTPEFHVIRVEMKKEGWFSEQGALVYLDTNSAT 65

Query: 42  VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +    A    D     +HG  GE G +Q++LEL  IPY   G  ASA S +K+ SK    
Sbjct: 66  LNSDKASYPIDFVVPCIHGFPGETGDIQSMLELAGIPYLGCGPEASANSFNKITSKLWYD 125

Query: 102 SCGVPVCPSILVNRFTMDSQHLISPPY------VIKPLKGGSSLGIIVIKKDQSIPLDLL 155
           +  +P  P + + + T  S       +       +K  + GSS+G   +  +  I   + 
Sbjct: 126 ALDIPNTPYLFLTQNTPSSIDKAKQAFGHWGSIFVKAARQGSSVGCYKVTTEDQIAPAI- 184

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYSSLN- 210
             +++   +Q+L+EQ V   EL       +  L ++   E+  P+  FYSYE KYS+ + 
Sbjct: 185 -EAAFGFSEQVLVEQAVKPRELEVSAYEMNGKLYISKPGEVIAPEGTFYSYEEKYSANSH 243

Query: 211 STHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
           +  VL A+ +     + +Q  A      +  R +SR DF       +++  E+N  PGMT
Sbjct: 244 ARTVLEAENLTEKHKELIQTYAERVFIHMKLRHLSRIDFFLT-QEGQIYLNEVNTFPGMT 302

Query: 270 PVSIFPEMAAYAG 282
           P+S+FP+M  + G
Sbjct: 303 PISMFPKMLEHNG 315


>gi|291530203|emb|CBK95788.1| D-alanine--D-alanine ligase [Eubacterium siraeum 70/3]
          Length = 397

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 88/364 (24%), Positives = 155/364 (42%), Gaps = 74/364 (20%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-----------------RSVG 43
           + V  GG S E EVS+ S     +++    ++V+ + +                  R++ 
Sbjct: 5   VGVFFGGKSVEHEVSIISALQACNSINKDKYEVTPVYITKNNEMYVGEKIGNIASYRNLK 64

Query: 44  LVLAHLK----------------------------PDLAFNVLHGNFGEDGLVQAILELL 75
            +L   +                             D+AF ++HG   EDG+ Q  L+ +
Sbjct: 65  SLLKESRRVILVNDGGKVQLVLYPGKKFGNNVYATIDVAFPIVHGTNVEDGVFQGYLQTI 124

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT---------MDSQHLISP 126
            +PY    +++SA+ MDK   K V    G+PV    +++             D +  I+ 
Sbjct: 125 GVPYVGCDVISSAVGMDKYVMKTVFKDNGIPVLDGTVIHISDYAKDADAVKADIKAKIAY 184

Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGD- 184
           P ++KP+  GSS+GI++   D+ +  D    +++ +  +LL+E  +    E+ C V GD 
Sbjct: 185 PLIVKPINLGSSVGIMIAHNDEQL--DEALDNAFTYASKLLVEPAITNLKEINCSVCGDY 242

Query: 185 ASLDVTEIAVP--KSDFYSYELKYSSLNS----------THVLPAKIPLDIYKEVQRLAF 232
           A+   +E   P    +  SYE KY + +              +PA I     ++++ LA 
Sbjct: 243 ATAHASECEEPVNTDEILSYEDKYIAGDKGGKSSGMATLKRKIPADISDKTREQIRTLAV 302

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
            A +++G  G SR DF+ D  +  V+  EIN  PG    S+   +    G  + ELL  M
Sbjct: 303 KAFRSLGASGTSRIDFMIDMDNGNVYLNEINTIPG----SLAFYLWEPVGVKYSELLDEM 358

Query: 293 VEDA 296
           +  A
Sbjct: 359 ISLA 362


>gi|167750589|ref|ZP_02422716.1| hypothetical protein EUBSIR_01565 [Eubacterium siraeum DSM 15702]
 gi|167656515|gb|EDS00645.1| hypothetical protein EUBSIR_01565 [Eubacterium siraeum DSM 15702]
          Length = 397

 Score =  250 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 87/364 (23%), Positives = 155/364 (42%), Gaps = 74/364 (20%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-----------------RSVG 43
           + V  GG S E EVS+ S     +++    ++V  + +                  R++ 
Sbjct: 5   VGVFFGGKSVEHEVSIISALQACNSINKDKYEVIPVYITKNNEMYVGEKIGNIASYRNLK 64

Query: 44  LVLAHLK----------------------------PDLAFNVLHGNFGEDGLVQAILELL 75
            +L   +                             D+AF ++HG   EDG+ Q  L+ +
Sbjct: 65  SLLKESRRVILVNDGGKVQLVLYPGKRFGNNVYATIDVAFPIVHGTNVEDGVFQGYLQTI 124

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT---------MDSQHLISP 126
            +PY    +++SA+ MDK   K V    G+PV    +++             D +  I+ 
Sbjct: 125 GVPYVGCDVISSAVGMDKYVMKTVFKDNGIPVLDGTVIHISDYAKDADAVKADIKAKIAY 184

Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGD- 184
           P ++KP+  GSS+GI++   D+ +  D    +++ +  +LL+E  +    E+ C V GD 
Sbjct: 185 PLIVKPINLGSSVGIMIAHNDEQL--DEALDNAFTYASKLLVEPAITNLKEINCSVCGDY 242

Query: 185 ASLDVTEIAVP--KSDFYSYELKYSSLNS----------THVLPAKIPLDIYKEVQRLAF 232
           A+   +E   P    +  SY+ KY + +              +PA I  +  ++++ LA 
Sbjct: 243 ATAHASECEEPVNTDEILSYKDKYIAGDKGGKSSGMATLKRKIPADISDETREQIRTLAV 302

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
            A +++G  G SR DF+ D  +  V+  EIN  PG    S+   +    G  + ELL  M
Sbjct: 303 KAFRSLGASGTSRIDFMIDMDNGNVYLNEINTIPG----SLAFYLWEPVGVKYSELLDEM 358

Query: 293 VEDA 296
           +  A
Sbjct: 359 ISLA 362


>gi|254446850|ref|ZP_05060325.1| D-ala D-ala ligase N-terminal domain protein, putative
           [Verrucomicrobiae bacterium DG1235]
 gi|198256275|gb|EDY80584.1| D-ala D-ala ligase N-terminal domain protein, putative
           [Verrucomicrobiae bacterium DG1235]
          Length = 310

 Score =  250 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 99/301 (32%), Positives = 159/301 (52%), Gaps = 12/301 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-SVGLVLAHLKPDLAFNVLH 59
           +AVL GG S EREVSL SGKA A+A     F+V   DV   S        +  + F+ LH
Sbjct: 6   IAVLYGGTSEEREVSLGSGKAAAAA-LGKSFEVDLFDVQAYSRLPDGLDPRRHVVFSTLH 64

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM- 118
           G+FGEDG  Q +++   + Y     ++S L+ DK+ +K+ +S+ GVPV   ++     + 
Sbjct: 65  GSFGEDGTAQRMMDEAGVIYAGCDAVSSQLTFDKVATKREMSAAGVPVTREVVFADGAIP 124

Query: 119 ---DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175
              +    +    V+KP+  GSS+G++  + +  I   L          + L+E  + G 
Sbjct: 125 GVEEIIGRLGSSVVLKPVAQGSSVGLMFAESEAKIVGCLKNCE----EGRWLVEPRIQGQ 180

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
           E T G++   ++ V EI  PKS  + Y  KY+   + ++ PA+   ++ + +++LA  A 
Sbjct: 181 EATVGILDGEAMGVVEIR-PKSGHFDYSSKYTKGLTEYIAPAEFDEELTERIRKLATKAF 239

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           +A GCR  +R D + D      ++LEIN  PG+   S+ P  AA +GY+F ELL  +VE 
Sbjct: 240 EACGCRDYARIDCMVDT-GGNPYFLEINTLPGLKETSLLPMSAALSGYNFDELLQKLVEP 298

Query: 296 A 296
           A
Sbjct: 299 A 299


>gi|54013449|dbj|BAD60786.1| D-alanyl-D-alanine ligase [Streptomyces lavendulae subsp.
           lavendulae]
          Length = 345

 Score =  250 bits (638), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 105/346 (30%), Positives = 158/346 (45%), Gaps = 53/346 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           + +L GG S ER+VSL+SG + A AL + G +V  +D      ++   L P         
Sbjct: 3   IVILCGGESPERDVSLASGSSVARALLERGHEVLLVDPAAGEPVLAGPLHPGDVVDGFEV 62

Query: 52  ---------------------------------DLAFNVLHGNFGEDGLVQAILELLEIP 78
                                            DL F  LHG +GEDG VQ  LE   + 
Sbjct: 63  GKEPPAGHERHGLRQRMAAAFDGGALPALLRDADLVFTALHGGWGEDGWVQERLEAAGVR 122

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP-----PYVIKPL 133
           +T +G  A A + +K R++ V+++ GVPV    L      +    + P     P V KP+
Sbjct: 123 FTGAGSTACAAAWNKERAQAVLAAAGVPVTERALWPAAADEVPKEVRPLVAAGPVVAKPV 182

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
             GSS+   V + D    L+ L       G  LL+E ++ G E T GV+G   L V EI 
Sbjct: 183 ADGSSV--SVHRADSLAELERLAPQMRADGGDLLVEPFLSGREFTVGVVGGQVLPVIEIE 240

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR--GISRSDFLFD 251
           +  +  + Y  KY     + V PA+IP +    +Q+LA  AH+A+G      SR+DF  D
Sbjct: 241 LS-TPLFDYAAKYQPGAVSEVCPARIPEEFASRLQQLALRAHEALGFGPHTYSRADFRCD 299

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
               +   LE+N  PG+T  S+ P  A+ AG+++ +L   +V  A+
Sbjct: 300 AA-GEPMCLEVNALPGLTATSLLPLGASGAGWTYADLAERIVSLAT 344


>gi|227500315|ref|ZP_03930382.1| D-alanine--D-alanine ligase [Anaerococcus tetradius ATCC 35098]
 gi|227217601|gb|EEI82913.1| D-alanine--D-alanine ligase [Anaerococcus tetradius ATCC 35098]
          Length = 345

 Score =  249 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 78/338 (23%), Positives = 140/338 (41%), Gaps = 46/338 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD-------- 52
           + +L G  SSE ++SL S    +  L +  +K+  + +++      +  K D        
Sbjct: 4   VYILCGSPSSEHDISLRSALNISKNLNEEKYKIKLVYINKEGAYSDSFDKIDTSDEFDLV 63

Query: 53  --------------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
                                     +    +HG +GEDG +Q +L++  + Y  +G+L+
Sbjct: 64  RDIKVNKAKSIANFLDSLSKEDLSETIIIPAVHGTYGEDGTIQGLLDVAGLKYIGNGLLS 123

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNR------FTMDSQHLISPPYVIKPLKGGSSLG 140
           SA+ MDK+ S  +     +     +  NR      F       I  P ++KP   GSS+G
Sbjct: 124 SAICMDKVTSNDIFEKNNLRQAKYLYTNREGFGESFAQKCIDEIGLPLIVKPSANGSSVG 183

Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA--VPKSD 198
           +  +   + +      +    +  ++L+E+ + G E+   V+G  + DV+     +    
Sbjct: 184 VSKVTSKEELLEAGYLAL--KYDKKVLVEELIVGQEIEFAVVGHMNPDVSRPGAYISDHT 241

Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
           F  Y+ KY S  +   LP  +  D  KE Q     A++  GC G +R D  +       +
Sbjct: 242 FLDYDAKYFSKTTKESLPYDLDDDKLKEAQDFVRKAYEVCGCEGFARVDIFY-GEDGNFY 300

Query: 259 WLEINVQPGMTPVSIFPEMAAYA-GYSFRELLLWMVED 295
             EIN  PG TP S F  +       +F E+L  +++D
Sbjct: 301 VNEINTFPGFTPSSFFARLCELMYKKNFSEVLDILIDD 338


>gi|188994624|ref|YP_001928876.1| D-alanyl-alanine synthetase A [Porphyromonas gingivalis ATCC 33277]
 gi|229485973|sp|B2RIT4|DDL_PORG3 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|188594304|dbj|BAG33279.1| putative D-alanine--D-alanine ligase [Porphyromonas gingivalis ATCC
           33277]
          Length = 330

 Score =  249 bits (637), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 82/324 (25%), Positives = 147/324 (45%), Gaps = 34/324 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS------------------- 41
           +AV+ GG S E  VSL S     S L    F    + ++R                    
Sbjct: 6   VAVIAGGYSGEHSVSLKSAAGILSWLGSEPFSAFLVLIERDRWSVRVSEQREVPLDKNDF 65

Query: 42  -VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
              L    ++ D A+  +HG  GE+GL+Q  L+++ IPY     L  +L+ +K    + +
Sbjct: 66  SFDLDDERIRFDYAYITIHGTPGENGLLQGYLDMIGIPYNTGDTLVESLTFNKYVCNRFL 125

Query: 101 SSCGVPVCPSILVNRFT-----MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
           S  G+ +  S+ +          D    +  P  +KP  GGSS+    + +   +   + 
Sbjct: 126 SGFGIRIADSMRLTGRDTQPDVADLTARMGLPLFVKPNVGGSSIATTKVVEAAQLLPAIG 185

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNS 211
           Q  +++ G++++IE+ + G E+TCG         +L VTE+ V  ++F+ ++ KY+    
Sbjct: 186 Q--AFSEGEEVMIERLICGTEVTCGAFLRKKEVVALPVTEV-VAHNEFFDFDAKYN-GAV 241

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271
             + PA+I  +  + +Q +    ++ +  RGI R D++          LE+N  PGMTP 
Sbjct: 242 EEITPARISDEATRLIQTMTARIYELLNARGIIRVDYII-EADGIPTLLEVNTTPGMTPT 300

Query: 272 SIFPEMAAYAGYSFRELLLWMVED 295
           S  P+    A    +E+L  ++ D
Sbjct: 301 SFIPQQVRAAEMDMKEVLCTIIRD 324


>gi|170783394|ref|YP_001711728.1| D-alanine--D-alanine ligase B [Clavibacter michiganensis subsp.
           sepedonicus]
 gi|169157964|emb|CAQ03174.1| D-alanine--D-alanine ligase B [Clavibacter michiganensis subsp.
           sepedonicus]
          Length = 321

 Score =  249 bits (636), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 104/315 (33%), Positives = 162/315 (51%), Gaps = 21/315 (6%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62
           VL GGIS ER+VSL SG+    AL  AG   S  D D ++   L    P + + VLHG  
Sbjct: 11  VLAGGISHERDVSLRSGRRVVDALRGAGVVASLRDPDATLLDFLRETPPAVVWPVLHGAS 70

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-- 120
           GEDG +  +LEL  +PY  S   A+ L+ DK  +K +  + G+    S+ + + T     
Sbjct: 71  GEDGALLGLLELAGVPYVGSSARAARLAWDKPTAKAIAGTVGIRTPRSVTLPKDTFRELG 130

Query: 121 --------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                      +  PY +KP +GGS+ G+ +++   ++P  ++   ++ +GD  LIEQ +
Sbjct: 131 AAAVLRLVTEAVPAPYAVKPARGGSAQGVTIVRDADALPRAMVD--AYTYGDVALIEQLI 188

Query: 173 DGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           +G E+  GV+    G  +L  TEI VP S  Y YE +Y++  +    PA+I  +      
Sbjct: 189 EGTEVAIGVIDTGAGPEALPATEI-VPTSGVYGYEARYNAGLTRFYTPARISPEEAAAAS 247

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
             A   H+A+G   +SR D + D    + ++LE+NV PG+T  S+ P+  A AG    +L
Sbjct: 248 TAAVGIHRALGIGQMSRVDIIIDAA-GEPWFLEVNVIPGLTETSLLPQGLAAAGIEVGDL 306

Query: 289 LLWMVE---DASCLR 300
              + E   DAS +R
Sbjct: 307 YRRLAEAARDASTIR 321


>gi|229139253|ref|ZP_04267828.1| D-alanine--D-alanine ligase [Bacillus cereus BDRD-ST26]
 gi|228644312|gb|EEL00569.1| D-alanine--D-alanine ligase [Bacillus cereus BDRD-ST26]
          Length = 248

 Score =  249 bits (636), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 73/247 (29%), Positives = 128/247 (51%), Gaps = 9/247 (3%)

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116
            LHG +GEDG VQ  LE L IPY+ S +L+S + MDK  SK+++   G+     I + + 
Sbjct: 3   ALHGKYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNISKKILRYEGIETPDWIELTKM 62

Query: 117 T---MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
               +D    +  P V+KP  GGSS+G+ ++     +    +  + +    +++IE+Y+ 
Sbjct: 63  EDLNVDELDKLGFPLVVKPNSGGSSVGVKIVYDKDELIS--MLETVFEWDSEVVIEKYIK 120

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           G E+TC +     L +  I    ++F+ Y  KY    ST     ++P ++ + V + +  
Sbjct: 121 GDEITCSIFDGKQLPIISIR-HAAEFFDYNAKYD-DTSTIEEVIELPAELKERVNKASLA 178

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            ++A+ C   +R D +        + +EIN  PGMT  S+ P+ AA AG  + +LL  ++
Sbjct: 179 CYKALKCSVYARVDMMV--KDGIPYVMEINTLPGMTQASLLPKSAAAAGIEYSKLLDMII 236

Query: 294 EDASCLR 300
           E +  +R
Sbjct: 237 ETSLRVR 243


>gi|218134983|ref|ZP_03463787.1| hypothetical protein BACPEC_02888 [Bacteroides pectinophilus ATCC
           43243]
 gi|217990368|gb|EEC56379.1| hypothetical protein BACPEC_02888 [Bacteroides pectinophilus ATCC
           43243]
          Length = 398

 Score =  249 bits (636), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 91/363 (25%), Positives = 157/363 (43%), Gaps = 73/363 (20%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           +A++ GG S E EVS+ SG     +++   + V  + + ++  + +              
Sbjct: 10  VAMMFGGKSVEHEVSVISGIQAYMSMDTDKYDVIPVYMTKNNEMYIGDSIGDIESYKNID 69

Query: 47  -------------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELL 75
                                            +  D+AF V+HG   EDG  Q  L+ +
Sbjct: 70  ELLKKSQRVIMINEDGRVKLVQYPVKKLGKNVEVGIDVAFPVVHGTNVEDGGFQGYLKTM 129

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--------DSQHLISPP 127
            IP+    + ASA+ MDK  +K V+    VPV  + L              D +++   P
Sbjct: 130 GIPFVGCDVTASAIGMDKYITKLVLKESNVPVLDARLYTLSDYADMESMMNDIENVFGYP 189

Query: 128 YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDA- 185
            ++KP+  GSS+GI V K    + L      ++ +  ++L+E  +    E+ C V+GD  
Sbjct: 190 VIVKPVNLGSSVGISVAKSR--VELANSVDDAFRYATKVLVEHAITNLREINCSVLGDEN 247

Query: 186 SLDVTEIAVP--KSDFYSYELKY----------SSLNSTHVLPAKIPLDIYKEVQRLAFL 233
               +E   P    D  SYE KY             + +  +PA++  +  +EV+ LA  
Sbjct: 248 DAIASECEEPLHTKDILSYEDKYVSNAKGSGSKGMASVSRRIPAELTPEKREEVRELAVR 307

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           + +A+GC G+SR DF+ D  + K+++ EIN  PG    S+   +    G  ++ELL  M+
Sbjct: 308 SFKALGCNGVSRIDFMIDADTDKLYFNEINTIPG----SLAFYLWEPVGVPYKELLDRMI 363

Query: 294 EDA 296
           + A
Sbjct: 364 QLA 366


>gi|229550951|ref|ZP_04439676.1| D-alanine--D-alanine ligase [Lactobacillus rhamnosus LMS2-1]
 gi|258538338|ref|YP_003172837.1| D-alanine--D-alanine ligase [Lactobacillus rhamnosus Lc 705]
 gi|229315776|gb|EEN81749.1| D-alanine--D-alanine ligase [Lactobacillus rhamnosus LMS2-1]
 gi|257150014|emb|CAR88986.1| D-alanine--D-alanine ligase [Lactobacillus rhamnosus Lc 705]
          Length = 360

 Score =  249 bits (636), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 84/341 (24%), Positives = 148/341 (43%), Gaps = 53/341 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV----------------DRSVGL 44
           + VL GG S+ER VS+SSG    +AL   G + + ID+                D +   
Sbjct: 3   IVVLAGGRSTERNVSISSGYRITNALRQKGQQATFIDLFLGYDLEGKTVDQVFDDANTSK 62

Query: 45  VLA------------------------------HLKPDLAFNVLHGNFGEDGLVQAILEL 74
            L                                   D+ F  LHG  GE+G VQA L+L
Sbjct: 63  DLKISDAILTDADINKLRTDGSTQLFGPNVLAICKAADIVFLALHGGDGENGKVQATLDL 122

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL-ISPPYVIKPL 133
             + YT SG LAS ++M+K+ SK+V+   G+         R       +    P V+KP 
Sbjct: 123 NNVKYTGSGPLASGITMNKVFSKEVMLYHGIQTAAFKEFKRNQNGKHTVPFDFPVVVKPT 182

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
            GGSS+G  +    + +   +     +   +  ++E++  G E + GV+   +    EI 
Sbjct: 183 SGGSSVGTHIAHNQEELENGIADV--FRFDNSAIVEEFTPGREFSLGVVNGRAFSAIEIK 240

Query: 194 VPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
           V  S +Y ++ K+ +  +  + P   +   +++ ++ ++      +G +   R DF    
Sbjct: 241 V-HSGWYDFKHKFQAGYTDFITPPKNLDESVHQAMKDVSLQTMDVLGLQNYGRIDFF--A 297

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
             + V+ +E N  PGMTP+S+ P+ A   G  + +L++ ++
Sbjct: 298 NDKGVWVIEANNLPGMTPLSLLPQEAEADGVEYGDLVMDII 338


>gi|258507143|ref|YP_003169894.1| D-alanine--D-alanine ligase [Lactobacillus rhamnosus GG]
 gi|257147070|emb|CAR86043.1| D-alanine--D-alanine ligase [Lactobacillus rhamnosus GG]
 gi|259648513|dbj|BAI40675.1| D-alanine-D-alanine ligase [Lactobacillus rhamnosus GG]
          Length = 360

 Score =  248 bits (635), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 89/341 (26%), Positives = 152/341 (44%), Gaps = 53/341 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID----------------------- 37
           + VL GG S+ER VS+SSG    +AL   G + + ID                       
Sbjct: 3   IVVLAGGRSTERNVSISSGYRITNALRQKGQQATFIDLFLGYDLEGKTVDQVFDDANTSK 62

Query: 38  ------------------VDRSVGL----VLAHLKP-DLAFNVLHGNFGEDGLVQAILEL 74
                             +D S  L    VLA  K  D+ F  LHG  GE+G VQA L+L
Sbjct: 63  DLKISDAILTDADINKLRIDGSTQLFGPNVLAICKAADIVFLALHGGDGENGKVQATLDL 122

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL-ISPPYVIKPL 133
             + YT SG LAS ++M+K+ SK+V+   G+         R       +    P V+KP 
Sbjct: 123 NNVKYTGSGPLASGITMNKVFSKEVMLYHGIQTAAFKEFKRNQNGKHTVPFDFPVVVKPT 182

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
            GGSS+G  +    + +   +     +   +  ++E++  G E + GV+   +    EI 
Sbjct: 183 SGGSSVGTHIAHNQEELENGIADV--FRFDNSAIVEEFTPGREFSLGVVNGRAFSAIEIK 240

Query: 194 VPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
           V  S +Y ++ K+ +  +  + P   +   +++ ++ ++      +G +   R DF    
Sbjct: 241 V-HSGWYDFKHKFQAGYTDFITPPKNLDESVHQAMKDVSLQTMDVLGLQNYGRIDFF--A 297

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
             + V+ +E N  PGMTP+S+ P+ A   G  + +L++ ++
Sbjct: 298 NDKGVWVIEANNLPGMTPLSLLPQEAEADGVEYGDLVMDII 338


>gi|304440570|ref|ZP_07400456.1| D-alanine-D-alanine ligase [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304370946|gb|EFM24566.1| D-alanine-D-alanine ligase [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 395

 Score =  248 bits (635), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 101/367 (27%), Positives = 155/367 (42%), Gaps = 78/367 (21%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI-----------DVDRSVGLVLAH- 48
           +AVL GG+S E EVS+ +G      ++   +    +           D  +  G +  + 
Sbjct: 8   IAVLFGGVSVEHEVSVITGMQVVENMDKTKYNPIPVLVTKEGKFLSGDAIKDFGNIKRNK 67

Query: 49  ---------------------------------------LKPDLAFNVLHGNFGEDGLVQ 69
                                                   K D  F  LHG FGEDG VQ
Sbjct: 68  LEDAKEVFFKPVRGDFNLYTEEEQGGGLFSKKTSGTVVFAKIDAVFVALHGTFGEDGAVQ 127

Query: 70  AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM------DSQHL 123
            IL+ + IPYT   + A+A+ MDK+  K V  S  +P+       R              
Sbjct: 128 GILQFIGIPYTGCAVNAAAVGMDKVIMKDVFKSQNIPMTDYFYFYRDFYKFDIVKAEAEK 187

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVM 182
           I  P  +KP   GSS+GI   K +  +   +    + ++  ++++E+ V+   E+ C V+
Sbjct: 188 IGYPVFVKPANLGSSVGISKAKNEAELKDAV--EVAMHYDRKIIVEKSVEKPREINCAVL 245

Query: 183 G---DASLDVTEIAVPKSDFYSYELKYSSL----------NSTHVLPAKIPLDIYKEVQR 229
           G   D    +TE  +   DF +Y+ KY S           N    LPA IP ++ +EV+R
Sbjct: 246 GYEDDLQASLTEEPITWEDFLTYDDKYKSGGKGSKSVGMKNQKKNLPANIPDEMTEEVKR 305

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           LA LA ++I   G++R DFL D  + KV+  EIN  PG     +F       G SF+EL+
Sbjct: 306 LAKLAFRSIDAMGVARIDFLVDE-NEKVYVNEINTLPGSIAFYLF----EPMGISFKELI 360

Query: 290 LWMVEDA 296
              ++ A
Sbjct: 361 DRQIDLA 367


>gi|291557013|emb|CBL34130.1| D-alanine--D-alanine ligase [Eubacterium siraeum V10Sc8a]
          Length = 397

 Score =  248 bits (635), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 87/364 (23%), Positives = 154/364 (42%), Gaps = 74/364 (20%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-----------------RSVG 43
           + V  GG S E EVS+ S     +++    ++V  + +                  R++ 
Sbjct: 5   VGVFFGGKSVEHEVSIISALQACNSINKDKYEVIPVYITKNNEMYVGEKIGNIASYRNLK 64

Query: 44  LVLAHLK----------------------------PDLAFNVLHGNFGEDGLVQAILELL 75
            +L                                 D+AF ++HG   EDG+ Q  L+ +
Sbjct: 65  SLLKESHRVILVNDGGKVQLVLYPGKRFGNNVYATIDVAFPIVHGTNVEDGVFQGYLQTI 124

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT---------MDSQHLISP 126
            +PY    +++SA+ MDK   K V    G+PV    +++             D +  I+ 
Sbjct: 125 GVPYVGCDVISSAVGMDKYVMKTVFKDNGIPVLDGTVIHISDYAKDADAVKADIKAKIAY 184

Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGD- 184
           P ++KP+  GSS+GI++   D+ +  D    +++ +  +LL+E  +    E+ C V GD 
Sbjct: 185 PLIVKPINLGSSVGIMIAHNDEQL--DEALDNAFTYASKLLVEPAITNLKEINCSVCGDY 242

Query: 185 ASLDVTEIAVP--KSDFYSYELKYSSLNS----------THVLPAKIPLDIYKEVQRLAF 232
           A+   +E   P    +  SY+ KY + +              +PA I  +  ++++ LA 
Sbjct: 243 ATAHASECEEPVNTDEILSYKDKYIAGDKGGKSSGMATLKRKIPADISDETREQIRTLAV 302

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
            A +++G  G SR DF+ D  +  V+  EIN  PG    S+   +    G  + ELL  M
Sbjct: 303 KAFKSLGASGTSRIDFMIDMDNGNVYLNEINTIPG----SLAFYLWEPVGVKYSELLDEM 358

Query: 293 VEDA 296
           +  A
Sbjct: 359 ISLA 362


>gi|199599636|ref|ZP_03213015.1| D-alanine-D-alanine ligase related ATP-grasp enzyme [Lactobacillus
           rhamnosus HN001]
 gi|199589469|gb|EDY97596.1| D-alanine-D-alanine ligase related ATP-grasp enzyme [Lactobacillus
           rhamnosus HN001]
          Length = 360

 Score =  248 bits (635), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 89/341 (26%), Positives = 153/341 (44%), Gaps = 53/341 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID----------------------- 37
           + VL GG S+ER VS+SSG    +AL   G + + ID                       
Sbjct: 3   IVVLAGGRSTERNVSISSGYRITNALRQKGQQATFIDLFLGYDLEGKTVDQVFDDANTSK 62

Query: 38  ------------------VDRSVGL----VLAHLKP-DLAFNVLHGNFGEDGLVQAILEL 74
                             +D S  L    VLA  K  D+ F  LHG  GE+G VQA L+L
Sbjct: 63  DLKISDAILTDADINKLRIDGSTQLFGPNVLAICKAADIVFLALHGGDGENGKVQATLDL 122

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL-ISPPYVIKPL 133
             + YT SG LAS ++M+K+ SK+V+   G+         R       +    P V+KP 
Sbjct: 123 NNVKYTGSGPLASGITMNKVFSKEVMLYHGIQTAAFKEFKRNQNGKHTVPFDFPVVVKPT 182

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
            GGSS+G  +    + +   +     +   +  ++E++  G E + GV+   +    EI 
Sbjct: 183 SGGSSVGTHIAHNQEELENGIADV--FRFDNSAIVEEFTPGREFSLGVVNGRAFSAIEIK 240

Query: 194 VPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
           V  S +Y ++ K+ +  +  + P   +   +++ ++ ++      +G +   R DF    
Sbjct: 241 V-HSGWYDFKHKFQAGYTDFITPPKNLDESVHQAMKDVSLQTMDVLGLQNYGRIDFF--A 297

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            ++ V+ +E N  PGMTP+S+ P+ A   G  + +L++ ++
Sbjct: 298 NNKGVWVIEANNLPGMTPLSLLPQEAEADGVEYGDLVMDII 338


>gi|116493715|ref|YP_805449.1| D-alanine-D-alanine ligase related ATP-grasp enzyme [Lactobacillus
           casei ATCC 334]
 gi|191636959|ref|YP_001986125.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)
           (D-Ala-D-Ala ligase) [Lactobacillus casei BL23]
 gi|227533371|ref|ZP_03963420.1| D-alanine--D-alanine ligase [Lactobacillus paracasei subsp.
           paracasei ATCC 25302]
 gi|239630957|ref|ZP_04673988.1| D-alanine-D-alanine ligase [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|301065279|ref|YP_003787302.1| D-alanine-D-alanine ligase-like ATP-grasp enzyme [Lactobacillus
           casei str. Zhang]
 gi|122264830|sp|Q03CR5|DDL_LACC3 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|229485960|sp|B3W7C1|DDL_LACCB RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|116103865|gb|ABJ69007.1| D-alanine--D-alanine ligase [Lactobacillus casei ATCC 334]
 gi|190711261|emb|CAQ65267.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)
           (D-Ala-D-Ala ligase) [Lactobacillus casei BL23]
 gi|227189006|gb|EEI69073.1| D-alanine--D-alanine ligase [Lactobacillus paracasei subsp.
           paracasei ATCC 25302]
 gi|239527240|gb|EEQ66241.1| D-alanine-D-alanine ligase [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|300437686|gb|ADK17452.1| D-alanine-D-alanine ligase related ATP-grasp enzyme [Lactobacillus
           casei str. Zhang]
 gi|327380987|gb|AEA52463.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus casei LC2W]
 gi|327384162|gb|AEA55636.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus casei BD-II]
          Length = 357

 Score =  248 bits (634), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 90/341 (26%), Positives = 155/341 (45%), Gaps = 53/341 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV----------------DRSVGL 44
           + VL GG S+ER VS+SSG    +AL   G + + ID+                D +   
Sbjct: 3   IVVLAGGRSTERNVSISSGYRITNALRQKGQQATFIDLFLGYDLEGKTVEQVFDDANTSK 62

Query: 45  VLA------------HLKPD------------------LAFNVLHGNFGEDGLVQAILEL 74
            L              L+PD                  + F  LHG  GE+G VQA+ ++
Sbjct: 63  DLNISDAILTDEDINKLRPDGSTQLFGPNVMAICKAADIVFLALHGGDGENGKVQAVFDI 122

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL-ISPPYVIKPL 133
             + YT SG LAS ++M+K+ SK+V+   G+         R     Q +    P V+KP 
Sbjct: 123 NGVKYTGSGPLASGITMNKVFSKEVMLYHGIQTSGFKEFKRDQGPKQTVPFDFPVVVKPT 182

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
            GGSS+G  +I   + +   L     +   +  ++E++  G E + GV+   +    EI 
Sbjct: 183 SGGSSVGTHIIHNQEELESGLEDV--FRFDNSAIVEEFTPGREFSLGVVNGHAYSAIEIK 240

Query: 194 VPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
           V +S +Y ++ K+ +  +  + P   +  D+++ ++ +A      +G +   R DF  + 
Sbjct: 241 V-RSGWYDFKHKFQAGYTDFITPPKDLDEDVHQAMKDVAVQTMDVLGLQNYGRIDFFANE 299

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
               V+ +E N  PGMTP+S+ P+ A   G  + +L++ +V
Sbjct: 300 KG--VWVIEANNLPGMTPLSLLPQEAEADGVDYGDLVMDIV 338


>gi|331700385|ref|YP_004336624.1| D-alanine--D-alanine ligase [Pseudonocardia dioxanivorans CB1190]
 gi|326955074|gb|AEA28771.1| D-alanine--D-alanine ligase [Pseudonocardia dioxanivorans CB1190]
          Length = 315

 Score =  248 bits (634), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 93/286 (32%), Positives = 145/286 (50%), Gaps = 18/286 (6%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG+S EREVSL SG+  A +L  AG  V + DVD S+   L   +PD     LHG
Sbjct: 6   VAVLAGGLSHEREVSLRSGRRVAGSLRAAGATVFEWDVDSSLVERLRVERPDAVVIALHG 65

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN------ 114
             GE+G +QA+LELL +P+  S   A     DK  +K  +   G+     + +       
Sbjct: 66  GEGENGAIQAVLELLGVPFVGSRAPACRRVWDKPTAKSELRRAGLDTPDWVALPHATFRE 125

Query: 115 ---RFTMDSQ-HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
              R  +D+    +  P ++KP +GGS+LG  V+   + +P  ++   +  + D +L E+
Sbjct: 126 LGARSVLDAMVDKLGLPLMLKPDQGGSALGAQVVTTVEDLPSVMVSCLA--YSDTVLAER 183

Query: 171 YVDGIELTCGVMGD----ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE 226
           ++DG E+   V+        L + E+  P    Y Y  +Y+  ++    PA++  D+   
Sbjct: 184 FIDGTEVAVAVVETDGEPQVLPLVEVE-PLGGVYDYTARYTPGSTDFHCPARLAPDVLAR 242

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
           VQ  A  AH+ +G R +SR D + D     V  LE+NV PG+T  S
Sbjct: 243 VQDAALSAHRLLGLRDLSRMDAVVDA-DGNVQILELNVSPGLTDTS 287


>gi|296111077|ref|YP_003621458.1| D-alanine--D-alanine ligase [Leuconostoc kimchii IMSNU 11154]
 gi|295832608|gb|ADG40489.1| D-alanine--D-alanine ligase [Leuconostoc kimchii IMSNU 11154]
          Length = 377

 Score =  248 bits (633), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 91/346 (26%), Positives = 161/346 (46%), Gaps = 56/346 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAG-FKVSQIDVDRSV----------GLVLAHL 49
           +A+L GG SSE +VS  S +    A+   G + V+   + ++            L LA  
Sbjct: 6   VALLFGGNSSEHDVSKRSAQNFYDAIMATGKYDVTVFAIAQNGYFLDPESSKKILALADE 65

Query: 50  KP---------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
           +P                           D+ F V+HGN GEDG +Q +  LL  PY  +
Sbjct: 66  QPIVDAYMAKVDTSDPLARINALRNGGDFDIFFPVVHGNLGEDGTLQGLFRLLNKPYVGA 125

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVN-----RFTMDS-QHLISPPYVIKPLKGG 136
            +   A+S DK+ +K++++   +     I+++      +T D   + +     +K    G
Sbjct: 126 PLRGHAVSFDKVLTKELLTVNHIRNTNYIVIDTETAKDWTWDKITNELGSVVFVKAANQG 185

Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIA-- 193
           SS+GI  +K        L  S  +++  ++LIEQ V G  EL  GV+G+    V+EI   
Sbjct: 186 SSVGISRVKNAVEFETALADSFQYDY--KVLIEQAVKGPRELEVGVIGNEEPIVSEIGAH 243

Query: 194 -VPK----SDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
            VP+      +Y Y  K+   ++ +  +PA++P ++ +EV+ +A  +++ +  RG +R D
Sbjct: 244 TVPEQGEGDGWYDYNNKFVDNSAVYFEIPAQLPKEVTEEVKAMAIKSYKVLNLRGEARMD 303

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           FL D  +   +  E N  PG T +S+F  +  Y+     +L+  M+
Sbjct: 304 FLLDE-NNVPYLGEPNTLPGFTNMSLFKRLWDYSDIDNAKLVDMMI 348


>gi|145299219|ref|YP_001142060.1| D-alanyl-alanine synthetase A [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|189083030|sp|A4SN40|DDL_AERS4 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|142851991|gb|ABO90312.1| D-alanine-D-alanine ligase [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 329

 Score =  248 bits (633), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 83/321 (25%), Positives = 137/321 (42%), Gaps = 33/321 (10%)

Query: 3   VLMGGISSEREVSLSSGKACASAL-EDAGFKVSQIDV-----------------DRSVGL 44
           +L GG  SE EVSL S       L    G +V+++++                 D+ +  
Sbjct: 8   LLCGGGGSEHEVSLRSANFLEQQLGLVPGVEVTRVEMFADRWFSADGRECKLGLDKLLSF 67

Query: 45  VLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCG 104
                  D     +HG  GE G +Q+ LEL  +PY      AS +  +K+ +K  +S+ G
Sbjct: 68  DSVARPVDYVVPCIHGYPGETGDLQSFLELAGLPYLGCDAEASKICFNKISTKLWLSAIG 127

Query: 105 VPVCPSILVNRFTMDSQHLIS------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS 158
           +P  P + +      +               IK    GSS+G      +  +   +    
Sbjct: 128 IPNTPYLFLTEQNDAALTEAKAALAKWGKVFIKAASQGSSVGCYSASNETDLLQGIKD-- 185

Query: 159 SWNHGDQLLIEQYVDGIELTCGV--MGDA--SLDVTEIAVPKSDFYSYELKYSSLN--ST 212
           ++ + +Q+LIE+ V   EL   V   GD   +    EI VP+  FY+YE KYSS +  +T
Sbjct: 186 AFGYSEQVLIEKAVKPRELEVAVYQYGDELIATYPGEICVPQDKFYTYEEKYSSASHTAT 245

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
            +    +       +   A  A + +    +SR DF       ++   EIN  PGMT +S
Sbjct: 246 SLKAEGLTQAQADAIHEYALKAFRQLKLTHLSRIDFFLTE-EGEILLNEINTFPGMTSIS 304

Query: 273 IFPEMAAYAGYSFRELLLWMV 293
           +FP++  + G+SF   L  ++
Sbjct: 305 MFPKLLEHHGHSFAHYLEQIL 325


>gi|282882300|ref|ZP_06290931.1| D-alanine--D-alanine ligase [Peptoniphilus lacrimalis 315-B]
 gi|300813906|ref|ZP_07094210.1| D-ala D-ala ligase N-terminal domain protein [Peptoniphilus sp.
           oral taxon 836 str. F0141]
 gi|281297850|gb|EFA90315.1| D-alanine--D-alanine ligase [Peptoniphilus lacrimalis 315-B]
 gi|300511969|gb|EFK39165.1| D-ala D-ala ligase N-terminal domain protein [Peptoniphilus sp.
           oral taxon 836 str. F0141]
          Length = 390

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 94/366 (25%), Positives = 148/366 (40%), Gaps = 78/366 (21%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           +AV+ GGIS E EVS+ +G      L+   F    I + +        +           
Sbjct: 4   VAVVFGGISVEHEVSVITGLQVIENLDKEQFNPIPIYISKEGRFYSGEMLKDFKTYKEGK 63

Query: 50  ---------------------------------------KPDLAFNVLHGNFGEDGLVQA 70
                                                  + D  F  LHG FGEDG +Q 
Sbjct: 64  YREATEVFIIPQKGDRFLYSTKVVGGIFKKTHTENYIYARIDAIFPALHGTFGEDGAIQG 123

Query: 71  ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ-------HL 123
           + E + IPY   G+LA A  MDK+  K +  +  +PV       R  +            
Sbjct: 124 LFEYMNIPYVGCGVLAGACGMDKVIMKDIFKANNIPVVDYTYFYRSELKDLQSVLKKCEK 183

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVM 182
           +  P ++KP   GSS+GI  +K    +   L  +S  N+  ++++E+ + D  E+   V+
Sbjct: 184 LGYPLIVKPANLGSSIGISKVKDTLELTKALEVAS--NYDKKIIVEKCLTDHREINVAVL 241

Query: 183 GDA-SLDVTEIAVP--KSDFYSYELKY---------SSLNSTHVLPAKIPLDIYKEVQRL 230
           GD   L V+    P    D  +Y  KY         S  N    LPA +  +++ ++ +L
Sbjct: 242 GDQDDLKVSACEEPITAEDILTYGDKYVGSSKTKMASQENQKKKLPADLSKEVHNKICQL 301

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A  + +AI   G+SR DFL    + +V+  EIN  PG     +F       G SF++LL 
Sbjct: 302 AKESFKAIDATGVSRIDFLL--KNDEVYVNEINTLPGSIAFYLF----EVEGLSFKDLLT 355

Query: 291 WMVEDA 296
            ++E A
Sbjct: 356 KLLEIA 361


>gi|59713753|ref|YP_206528.1| D-alanyl-alanine synthetase A [Vibrio fischeri ES114]
 gi|81310804|sp|Q5E006|DDL_VIBF1 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|59482001|gb|AAW87640.1| D-alanine-D-alanine ligase A [Vibrio fischeri ES114]
          Length = 330

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 75/328 (22%), Positives = 140/328 (42%), Gaps = 35/328 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAG-FKVSQIDVDRSVGLVLAHL---------- 49
           + +L GG  +E EVSL S K  +  L +   F+++ +++       +             
Sbjct: 4   ILLLCGGGGTEHEVSLVSSKYISQQLSELDAFEITHLEIKDEGWFHIESGLKYELRSDKT 63

Query: 50  ---------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
                      D     +HG  GE G +Q++L++L IPY      +S  S +K+ SK   
Sbjct: 64  LLSGETVSSPVDYVVPCIHGYPGETGDIQSMLDMLSIPYLGCDAESSTNSFNKITSKLWY 123

Query: 101 SSCGVPVCPSILVNRFTMDSQHLISPP------YVIKPLKGGSSLGIIVIKKDQSIPLDL 154
            + G+P  P + +     ++               +K    GSS+G   +  +  +   +
Sbjct: 124 DALGIPNTPYLFLTENNEETHQSALAAFKQWGGLFVKAACQGSSVGCYKVTSEAELSKAI 183

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYSSL- 209
             + ++ +  Q+L+E+ V   EL       D  L  T   E+  P   FY+Y+ KY S  
Sbjct: 184 --NDAFGYSQQVLVEKAVKPRELEVAAYEIDGQLFTTAPGEVTAPDGAFYTYDEKYGSGS 241

Query: 210 -NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268
            ++T +    +  +  K + + +      +  + +SR DF       +++  E+N  PGM
Sbjct: 242 HSTTSLDAQNLTEEQVKLIDQYSRKVFTQMKLKDLSRIDFFLT-DDNEIYLNEVNTFPGM 300

Query: 269 TPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           TP+S+FP++  + G  F+  L   V +A
Sbjct: 301 TPISMFPKLLEHNGDCFKTFLQKAVLNA 328


>gi|209809421|ref|YP_002264959.1| D-alanyl-alanine synthetase A [Aliivibrio salmonicida LFI1238]
 gi|208010983|emb|CAQ81393.1| D-alanine--D-alanine ligase [Aliivibrio salmonicida LFI1238]
          Length = 343

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 79/328 (24%), Positives = 147/328 (44%), Gaps = 35/328 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAG-FKVSQIDVD---------------RSVGL 44
           + +L GG  +E EVSL S    A  L +   F+++ +++                RS   
Sbjct: 17  ILLLCGGSGTEHEVSLVSANYIAQQLSELNTFQITHLEIKDGSWFHIESGLKYELRSDKT 76

Query: 45  VL----AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           +L    A    D     +HG  GE G +Q++L++  IPY      AS  S +K+ SK   
Sbjct: 77  LLCNNEATAPVDYVVPCIHGYPGETGDIQSMLDMFSIPYLGCNAEASTNSFNKITSKLWY 136

Query: 101 SSCGVPVCPSILVNRF--TMDSQHLISPP----YVIKPLKGGSSLGIIVIKKDQSIPLDL 154
            +  +P  P + +     T   + L++        +K    GSS+G   +   + +   +
Sbjct: 137 DALSIPNTPYLFLTENNQTTHDEALVAFDQWGSLFVKAACQGSSVGCYHVTSKEQVVEAV 196

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYSSL- 209
             ++++ + +Q+L+E+ V   EL       D  L  T   E+  P   FY+YE KY S  
Sbjct: 197 --NNAFTYSEQVLVEKAVKPRELEVSAYEIDGELYTTLPGEVTAPDGAFYTYEEKYGSGS 254

Query: 210 -NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268
            ++T +    +  +  + + + +      +  + +SR DF       +++  E+N  PGM
Sbjct: 255 HSTTTLDAKNLTEEQIELINKYSRKVFTQMKLKDLSRIDFFLT-DENEIYLNEVNTFPGM 313

Query: 269 TPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           TP+S+FP++  + G+ F+  L   + +A
Sbjct: 314 TPISMFPKLLEHNGHCFKTFLQKAILNA 341


>gi|8569477|pdb|1EHI|A Chain A, D-Alanine:d-Lactate Ligase (Lmddl2) Of
           Vancomycin-Resistant Leuconostoc Mesenteroides
 gi|8569478|pdb|1EHI|B Chain B, D-Alanine:d-Lactate Ligase (Lmddl2) Of
           Vancomycin-Resistant Leuconostoc Mesenteroides
          Length = 377

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 86/347 (24%), Positives = 159/347 (45%), Gaps = 56/347 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAG-FKVSQI----------------------- 36
           +A++ GG SSE +VS  S +   +A+E  G +++                          
Sbjct: 6   VALIFGGNSSEHDVSKRSAQNFYNAIEATGKYEIIVFAIAQNGFFLDTESSKKILALEDE 65

Query: 37  --------------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
                         D    +  + +    D+ F V+HGN GEDG +Q + +LL+ PY  +
Sbjct: 66  QPIVDAFMKTVDASDPLARIHALKSAGDFDIFFPVVHGNLGEDGTLQGLFKLLDKPYVGA 125

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILV-----NRFTMDSQ-HLISPPYVIKPLKGG 136
            +   A+S DK  +K++++  G+     I+V     N ++ D     +     +K    G
Sbjct: 126 PLRGHAVSFDKALTKELLTVNGIRNTKYIVVDPESANNWSWDKIVAELGNIVFVKAANQG 185

Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAV- 194
           SS+GI  +   +     L  S  +++  ++LIE+ V+G  EL  GV+G+    V+EI   
Sbjct: 186 SSVGISRVTNAEEYTEALSDSFQYDY--KVLIEEAVNGARELEVGVIGNDQPLVSEIGAH 243

Query: 195 ------PKSDFYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
                     +Y Y  K+   ++ H   PA++  ++ KEV+++A  A++ +  RG +R D
Sbjct: 244 TVPNQGSGDGWYDYNNKFVDNSAVHFQIPAQLSPEVTKEVKQMALDAYKVLNLRGEARMD 303

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           FL D  +   +  E N  PG T +S+F  +  Y+  +  +L+  +++
Sbjct: 304 FLLDE-NNVPYLGEPNTLPGFTNMSLFKRLWDYSDINNAKLVDMLID 349


>gi|227431259|ref|ZP_03913313.1| D-alanine--D-alanine ligase [Leuconostoc mesenteroides subsp.
           cremoris ATCC 19254]
 gi|227353021|gb|EEJ43193.1| D-alanine--D-alanine ligase [Leuconostoc mesenteroides subsp.
           cremoris ATCC 19254]
          Length = 386

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 86/347 (24%), Positives = 160/347 (46%), Gaps = 56/347 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAG-FKVSQI----------------------- 36
           +A++ GG SSE +VS  S +   +A+E  G +++                          
Sbjct: 15  VALIFGGNSSEHDVSKRSAQNFYNAIEATGKYEIIVFAIAQNGFFLDTESSKKILALEDE 74

Query: 37  --------------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
                         D    +  + +    D+ F V+HGN GEDG +Q + +LL+ PY  +
Sbjct: 75  QPIVDAFMKTVDTSDPLARIHALKSAGDFDIFFPVVHGNLGEDGTLQGLFKLLDKPYVGA 134

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILV-----NRFTMDSQ-HLISPPYVIKPLKGG 136
            +   A+S DK  +K++++  G+     I+V     N ++ D     +     +K    G
Sbjct: 135 PLRGHAVSFDKALTKELLTVNGIRNTKYIVVDPESANNWSWDKIVAELGNIVFVKAANQG 194

Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAV- 194
           SS+GI  +   +     L  S  +++  ++LIE+ V+G  EL  GV+G+    V+EI   
Sbjct: 195 SSVGISRVTNAEEYTEALSDSFQYDY--KVLIEEAVNGARELEVGVIGNDQPLVSEIGAH 252

Query: 195 ------PKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
                     +Y Y  K+   ++ H  +PA++  ++ KEV+++A  A++ +  RG +R D
Sbjct: 253 TVPNQGSGDGWYDYNNKFVDNSAVHFEIPAQLSPEVTKEVKQMALDAYKVLNLRGEARMD 312

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           FL D  +   +  E N  PG T +S+F  +  Y+  +  +L+  +++
Sbjct: 313 FLLDE-NNVPYLGEPNTLPGFTNMSLFKRLWDYSDINNAKLVDMLID 358


>gi|116617393|ref|YP_817764.1| D-alanine--D-alanine ligase [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
 gi|122272406|sp|Q03ZI1|DDL_LEUMM RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|1658487|gb|AAB18338.1| D-Ala-D-Ala ligase2 [Leuconostoc mesenteroides]
 gi|116096240|gb|ABJ61391.1| D-alanine--D-alanine ligase [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
          Length = 377

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 86/347 (24%), Positives = 160/347 (46%), Gaps = 56/347 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAG-FKVSQI----------------------- 36
           +A++ GG SSE +VS  S +   +A+E  G +++                          
Sbjct: 6   VALIFGGNSSEHDVSKRSAQNFYNAIEATGKYEIIVFAIAQNGFFLDTESSKKILALEDE 65

Query: 37  --------------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
                         D    +  + +    D+ F V+HGN GEDG +Q + +LL+ PY  +
Sbjct: 66  QPIVDAFMKTVDASDPLARIHALKSAGDFDIFFPVVHGNLGEDGTLQGLFKLLDKPYVGA 125

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILV-----NRFTMDSQ-HLISPPYVIKPLKGG 136
            +   A+S DK  +K++++  G+     I+V     N ++ D     +     +K    G
Sbjct: 126 PLRGHAVSFDKALTKELLTVNGIRNTKYIVVDPESANNWSWDKIVAELGNIVFVKAANQG 185

Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAV- 194
           SS+GI  +   +     L  S  +++  ++LIE+ V+G  EL  GV+G+    V+EI   
Sbjct: 186 SSVGISRVTNAEEYTEALSDSFQYDY--KVLIEEAVNGARELEVGVIGNDQPLVSEIGAH 243

Query: 195 ------PKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
                     +Y Y  K+   ++ H  +PA++  ++ KEV+++A  A++ +  RG +R D
Sbjct: 244 TVPNQGSGDGWYDYNNKFVDNSAVHFEIPAQLSPEVTKEVKQMALDAYKVLNLRGEARMD 303

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           FL D  +   +  E N  PG T +S+F  +  Y+  +  +L+  +++
Sbjct: 304 FLLDE-NNVPYLGEPNTLPGFTNMSLFKRLWDYSDINNAKLVDMLID 349


>gi|3913422|sp|Q48745|DDL_LEUME RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|1185361|gb|AAA87679.1| putative D-alanine:D-alanine ligase [Leuconostoc mesenteroides]
          Length = 377

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 85/347 (24%), Positives = 159/347 (45%), Gaps = 56/347 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALED-AGFKVSQI----------------------- 36
           +A++ GG SSE +VS  S +   +A+E    +++                          
Sbjct: 6   VALIFGGNSSEHDVSKRSAQNFYNAIEATDKYEIIVFAIAQNGFFLDTESSKKILALEDE 65

Query: 37  --------------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
                         D    +  + +    D+ F V+HGN GEDG +Q + +LL+ PY  +
Sbjct: 66  QPIVDAFMKTVDTSDPLARIHALKSAGDFDIFFPVVHGNLGEDGTLQGLFKLLDKPYVGA 125

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILV-----NRFTMDSQ-HLISPPYVIKPLKGG 136
            +   A+S DK  +K++++  G+     I+V     N ++ D     +     +K    G
Sbjct: 126 PLRGHAVSFDKALTKELLTVNGIRNTKYIVVDPESANNWSWDKIVAELGNIVFVKAANQG 185

Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAV- 194
           SS+GI  +   +     L  S  +++  ++LIE+ V+G  EL  GV+G+    V+EI   
Sbjct: 186 SSVGISRVTNAEEYTEALSDSFQYDY--KVLIEEAVNGARELEVGVIGNDQPLVSEIGAH 243

Query: 195 ------PKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
                     +Y Y  K+   ++ H  +PA++  ++ KEV+++A  A++ +  RG +R D
Sbjct: 244 TVPNQGSGDGWYDYNNKFVDNSAVHFEIPAQLSPEVTKEVKQMALDAYKVLNLRGEARMD 303

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           FL D  +   +  E N  PG T +S+F  +  Y+  +  +L+  +++
Sbjct: 304 FLLDE-NNVPYLGEPNTLPGFTNMSLFKRLWDYSDINNAKLVDMLID 349


>gi|150020384|ref|YP_001305738.1| D-alanine--D-alanine ligase [Thermosipho melanesiensis BI429]
 gi|166198511|sp|A6LKA2|DDL_THEM4 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|149792905|gb|ABR30353.1| D-alanine--D-alanine ligase [Thermosipho melanesiensis BI429]
          Length = 361

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 77/341 (22%), Positives = 154/341 (45%), Gaps = 57/341 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL----VLAHLK------ 50
           + +  G  S E E+S+ + +   S+++   + V  I + +S       VL  L+      
Sbjct: 4   IGIFFGSKSVEHEISIITAQQVLSSIDRKKYNVIPIYISKSGEWFTGKVLEDLETFKDFD 63

Query: 51  -----------------------------PDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81
                                         D  F V HG  GEDG  Q + E+  IPY+ 
Sbjct: 64  KLEKKAKKIDSFSVKNNKLLLKYGLKKQTIDFCFLVFHGTNGEDGTFQGMCEIFGIPYSG 123

Query: 82  SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGS 137
               +SA +MDK+ +K ++    + V           +     +  +  P ++KP + GS
Sbjct: 124 CNHFSSAFTMDKVVTKLLLKEKEISVVDFEYTTEINEEFFKRCEKNLGYPMIVKPARLGS 183

Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV--P 195
           S+G+  +   ++    +     +   +++L+E++++  E+ C VMG  ++ V+E+     
Sbjct: 184 SIGVSKVVDRKNFEEAVKNVLLF--DNKVLVEKWINAREINCAVMGYKNIFVSELEEINK 241

Query: 196 KSDFYSYELKYSSLN---STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
           K+DF+++E KY       S H++PA+I  ++  +++ +A    + + C G  R DFL   
Sbjct: 242 KNDFFNFEEKYFKKGKKFSNHIIPARIDENLKNKIKEIAKDTFKILECSGNVRIDFLI-- 299

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            + K++  EIN  PG   +S +  +   +G++F +++  M+
Sbjct: 300 -ADKIYVNEINTIPG--ALSFY--IWQKSGFTFSQIIDNMI 335


>gi|170016570|ref|YP_001727489.1| D-alanine--D-alanine ligase [Leuconostoc citreum KM20]
 gi|229485963|sp|B1MWZ3|DDL_LEUCK RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|169803427|gb|ACA82045.1| D-alanine--D-alanine ligase [Leuconostoc citreum KM20]
          Length = 377

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 87/347 (25%), Positives = 151/347 (43%), Gaps = 56/347 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASA-LEDAGFKVSQI---------DVDRS--------- 41
           +A++ GG SSE +VS  S +    A L    ++++           D +RS         
Sbjct: 6   VALIFGGNSSEHDVSKRSAQNFYDAILATGKYRITVFAIAQNGYVLDPERSKRILALEDE 65

Query: 42  -------------------VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
                              +  + A    D+ F V+HGN GEDG +Q + +LL  PY  +
Sbjct: 66  RPIVADYMTTVDQQDPLSRINALRAAGDFDIFFPVVHGNLGEDGTLQGLFKLLNKPYVGA 125

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ------HLISPPYVIKPLKGG 136
            +   A+S DK+ +K++++   +     I+V+  T  +         +     +K    G
Sbjct: 126 PLRGHAVSFDKVLTKELLTVNNIRNTKYIVVDEKTAKTLTWAQVVKDLGDVVFVKAANQG 185

Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVP 195
           SS+G+   K        L  S  +++  ++LIE  V G  EL  GV+G+    V+EI   
Sbjct: 186 SSVGVSRAKTADEFEAALTDSFQYDY--KVLIEAAVKGPRELEVGVIGNEDPIVSEIGAH 243

Query: 196 K-------SDFYSYELKYSSLNS-THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
                     +Y Y  K+   +S    +PA +P  +  EV+ +A  A++ +  RG +R D
Sbjct: 244 HVPNQGDGDAWYDYNNKFVDNSSVQFEIPANLPDAVTAEVKDMALKAYKVLDLRGEARMD 303

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           FL D  +   +  E N  PG T +S+F  +  Y+     EL+  +++
Sbjct: 304 FLLDE-NNVPYLGEPNTLPGFTNMSLFKRLWDYSDIDNVELVDKLID 349


>gi|117920750|ref|YP_869942.1| D-alanyl-alanine synthetase A [Shewanella sp. ANA-3]
 gi|189083055|sp|A0KXL7|DDL_SHESA RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|117613082|gb|ABK48536.1| D-alanine--D-alanine ligase [Shewanella sp. ANA-3]
          Length = 336

 Score =  246 bits (629), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 78/325 (24%), Positives = 142/325 (43%), Gaps = 37/325 (11%)

Query: 3   VLMGGISSEREVSLSSGKACASAL-EDAGFKVSQIDVDRSVGLVLAHL------------ 49
           +L GG S+E ++SL S     ++L +   F V ++ +D+      A              
Sbjct: 8   LLCGGGSAEHDISLLSANYFETSLAKSEQFNVLRVVLDKFGQYQTAAGDDCELTNNREIR 67

Query: 50  ---------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
                      D     +HG  GE G +Q+   L+++PY      AS+   +K+ +K   
Sbjct: 68  FRDETKPAWPVDYVIPCIHGYPGETGDIQSYFNLIQLPYFGCESEASSNCFNKITAKMWF 127

Query: 101 SSCGVPVCPSILVNRFTMDSQHLISPPY------VIKPLKGGSSLGIIVIKKDQSIPLDL 154
           S+ G+P  P I +N++  D+               +K    GSS+G   +  D S  +  
Sbjct: 128 SALGIPNTPYIFLNQYDDDAIAQTQAALENWGSIFVKAASQGSSVGCYKV--DDSSKVAD 185

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLN 210
           +   ++ +   +++E+ +   EL   V        +    EI    + FY+++ KY+  +
Sbjct: 186 VLKDAFGYAPYVIVEKTIKARELEVAVYEYQGEVVATLPGEIICDSNTFYTFDEKYAKSS 245

Query: 211 --STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268
              T V+   +P DI ++++  A  A + +  R +SR DF       ++   EIN  PG 
Sbjct: 246 KARTDVVAQNVPTDISEQIRAYAIKAFKGMKLRHLSRIDFFLT-QDNEILLNEINTFPGS 304

Query: 269 TPVSIFPEMAAYAGYSFRELLLWMV 293
           TP+S+FP+M    G+ F E L  ++
Sbjct: 305 TPISMFPKMLQNHGHDFTEYLSLVI 329


>gi|255507376|ref|ZP_05383015.1| UDP-N-acetylmuramate--alanine ligase [Chlamydia trachomatis
           D(s)2923]
 gi|289525806|emb|CBJ15287.1| UDP-N-acetylmuramate--alanine ligase [Chlamydia trachomatis
           Sweden2]
 gi|296435384|gb|ADH17562.1| bifunctional D-alanyl-alanine synthetase
           A/UDP-N-acetylmuramate--L-alanine ligase [Chlamydia
           trachomatis E/150]
 gi|296439101|gb|ADH21254.1| bifunctional D-alanyl-alanine synthetase
           A/UDP-N-acetylmuramate--L-alanine ligase [Chlamydia
           trachomatis E/11023]
          Length = 803

 Score =  246 bits (629), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 77/331 (23%), Positives = 140/331 (42%), Gaps = 41/331 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------------------- 40
           + ++ GG S E E+S+ S K  A  L  + + VS   + R                    
Sbjct: 450 LGIICGGKSCEHEISVLSAKNIAKHLSKSFYDVSYFLITREGLWESVSSLETAEDSGKSV 509

Query: 41  -SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
               +     K D+   +LHG +GEDG +Q  LE +  PYT   I  SA++M+K+ +K+ 
Sbjct: 510 FDPEIAQRLEKVDVVLPILHGPYGEDGAMQGFLETIGKPYTGPAIAFSAIAMNKVFTKRF 569

Query: 100 VSSCGVPVCPSILV---------NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150
           +S  G+PV P + +         +++        S P  +K    GSS+G+  +     I
Sbjct: 570 MSDLGIPVVPYLPLTLAGWKQEQDKWLAHIVEAFSFPMFVKSSHLGSSIGVFEVHNV--I 627

Query: 151 PLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPK----SDFYSYELK 205
            L    + ++   + + +E+   G  E+   V+GD S       + +      F  Y+ K
Sbjct: 628 ELRDAINEAFMRDNDVFVEENRLGCKEIEVSVLGDGSGAFVVAGLHERRGSGGFIDYQAK 687

Query: 206 Y---SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
           Y      ++  V    +  +I +++   A   ++ +  +G  R DF  D      +  E+
Sbjct: 688 YGLSGKSSAQIVFDTDLSKEIQEQILEAADKIYRLLLGKGSCRIDFFVDEEGN-FWLSEM 746

Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           N  PGMT  S F       G+S+ +++  ++
Sbjct: 747 NPIPGMTETSPFLTSFIRKGWSYEQIVHQLI 777


>gi|223986473|ref|ZP_03636475.1| hypothetical protein HOLDEFILI_03790 [Holdemania filiformis DSM
           12042]
 gi|223961574|gb|EEF66084.1| hypothetical protein HOLDEFILI_03790 [Holdemania filiformis DSM
           12042]
          Length = 411

 Score =  246 bits (629), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 81/375 (21%), Positives = 150/375 (40%), Gaps = 85/375 (22%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-----------------SVG 43
           + V+ GG S E EVS+ S      AL+   ++V  + + +                 ++ 
Sbjct: 5   VGVVFGGESVEHEVSVISALQGIEALDKERYEVIPLYISKQRDFYSSPALLEVENYKNLD 64

Query: 44  LVLAHLKP---------------------------DLAFNVLHGNFGEDGLVQAILELLE 76
            ++    P                           D+   ++HG  GEDG +Q  LE+L+
Sbjct: 65  ELIQKATPVVLVKKGKEVVVEPIKKGLFTKPIGTVDVIVPIMHGTNGEDGTIQGYLEMLK 124

Query: 77  IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ--------HLISPPY 128
           IPY    ++ +A+  DK+  K ++ + G+PVCP   +       +        H +  P 
Sbjct: 125 IPYAGCDVIGAAVGQDKVVMKHILQNSGLPVCPWFWLYGHEFAQKQEAVLAQVHELGYPV 184

Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMG---D 184
           V+KP   GSS+GI +   D+     +    +  + +++++EQ V    E+ C V+G   D
Sbjct: 185 VMKPACLGSSVGITIAHNDEEFIAGV--EDARQYDNKIVVEQMVKNLREINCSVLGSCFD 242

Query: 185 ASLDVTEIAVPKSDFYSYELKY-----------------------SSLNSTHVLPAKIPL 221
               V E    + +  S++ KY                          ++  ++PA +  
Sbjct: 243 CQASVLEEVGKQDEIMSFKDKYLGQGSTKGGSKGGVKCGTKSGDGGMASAARIVPAPVDE 302

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYA 281
              ++++ LA    + +G  G+ R DF+ D  +  ++  EIN  PG     +        
Sbjct: 303 ATTEKIRNLAIETFKVLGASGVCRIDFMMDGDTGMIYVNEINTIPGSLAYYL----WQPV 358

Query: 282 GYSFRELLLWMVEDA 296
           G SF +L+  +V  A
Sbjct: 359 GVSFTQLMDTLVSQA 373


>gi|268316561|ref|YP_003290280.1| D-alanine/D-alanine ligase [Rhodothermus marinus DSM 4252]
 gi|262334095|gb|ACY47892.1| D-alanine/D-alanine ligase [Rhodothermus marinus DSM 4252]
          Length = 414

 Score =  245 bits (627), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 87/377 (23%), Positives = 153/377 (40%), Gaps = 87/377 (23%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL-------------VLA 47
           + V+ GG+S E EVS+ +G   A+AL+   +++  + + +                  L 
Sbjct: 10  VGVVFGGVSPEHEVSVITGLQAAAALDRTRYEIVPLYIAKDGSWYTGPVLLELEAYQDLD 69

Query: 48  HLK-----------------------------------PDLAFNVLHGNFGEDGLVQAIL 72
            L+                                    D+    LHG  GE+G VQ + 
Sbjct: 70  ALRRAAIPVRFDPAVHGRMLLVEATPRRWPWRRPRRYLVDVVLLALHGGEGENGGVQGLC 129

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHL 123
           E L +PYT SG+L SAL MDK+ SK +    G+PV   +                  +  
Sbjct: 130 ETLNVPYTGSGVLGSALGMDKVLSKLLCREQGIPVVDFLWFREADWAGREEEWLDRLEAE 189

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVM 182
           +  P V+KP + GSS+GI  ++  Q++  D     ++ + +++++E+ +    E+ C V+
Sbjct: 190 LGYPMVVKPARLGSSIGIQRVEDRQAL--DAAIEEAFRYDEKVVVERAIRNLREINCAVL 247

Query: 183 GD--ASLDVTEIAVPKSD---FYSYELKY------------------SSLNSTHVLPAKI 219
           GD   +         +SD     +++ KY                     +   ++PA +
Sbjct: 248 GDPSEARPSMLEEPVRSDPSKLLTFQDKYMRGGGKAGRRAGKQQAPQGMASLDRIIPAPL 307

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279
                + VQ +A    Q   C G++R DFL D  + +V++ EIN  PG    S +  +  
Sbjct: 308 DEAQTRAVQEMAVRVFQLFECAGVARIDFLLDDDTGQVYFNEINTIPG--SFSFY--LWE 363

Query: 280 YAGYSFRELLLWMVEDA 296
             G  F  L+  ++  A
Sbjct: 364 PVGVPFDALMDELIRLA 380


>gi|255349159|ref|ZP_05381166.1| UDP-N-acetylmuramate--alanine ligase [Chlamydia trachomatis 70]
 gi|255503696|ref|ZP_05382086.1| UDP-N-acetylmuramate--alanine ligase [Chlamydia trachomatis 70s]
          Length = 803

 Score =  245 bits (627), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 77/331 (23%), Positives = 140/331 (42%), Gaps = 41/331 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------------------- 40
           + ++ GG S E E+S+ S K  A  L  + + VS   + R                    
Sbjct: 450 LGIICGGKSCEHEISVLSAKNIAKHLSKSFYDVSYFLITREGLWESVSSLETAEDSGKSV 509

Query: 41  -SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
               +     K D+   +LHG +GEDG +Q  LE +  PYT   I  SA++M+K+ +K+ 
Sbjct: 510 FDPEIAQRLEKVDVVLPILHGPYGEDGAMQGFLETIGKPYTGPAIAFSAIAMNKVFTKRF 569

Query: 100 VSSCGVPVCPSILV---------NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150
           +S  G+PV P + +         +++        S P  +K    GSS+G+  +     I
Sbjct: 570 MSDLGIPVVPYLPLTLAGWKQEQDKWLAHIVEAFSFPMFVKSSHLGSSIGVFEVHNV--I 627

Query: 151 PLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPK----SDFYSYELK 205
            L    + ++   + + +E+   G  E+   V+GD S       + +      F  Y+ K
Sbjct: 628 ELRDAINEAFMRDNDVFVEENRLGCKEIEVSVLGDGSGAFVVAGLHERRGSGGFIDYQEK 687

Query: 206 Y---SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
           Y      ++  V    +  +I +++   A   ++ +  +G  R DF  D      +  E+
Sbjct: 688 YGLSGKSSAQIVFDTDLSKEIQEQILEAADKIYRLLLGKGSCRIDFFVDEEGN-FWLSEM 746

Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           N  PGMT  S F       G+S+ +++  ++
Sbjct: 747 NPIPGMTETSPFLTSFIRKGWSYEQIVHQLI 777


>gi|254388377|ref|ZP_05003612.1| D-alanine-D-alanine ligase [Streptomyces clavuligerus ATCC 27064]
 gi|197702099|gb|EDY47911.1| D-alanine-D-alanine ligase [Streptomyces clavuligerus ATCC 27064]
          Length = 312

 Score =  245 bits (627), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 90/307 (29%), Positives = 142/307 (46%), Gaps = 18/307 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDL--AFNVL 58
           +A+L GG S E + S  S  A   AL + G +   +D+            PD   AF   
Sbjct: 5   VAILAGGPSPEGQGSFLSADAAGQALRELGHETEVVDISVPDFW---KRLPDFEAAFIAG 61

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
           HG + EDG +Q +LE++ +PYT SG+LAS++ M K   K ++ + G+   P   V+R   
Sbjct: 62  HGWYAEDGKLQGLLEVMGLPYTGSGVLASSVGMHKPTFKSLMVAHGIETLPWEPVSRGAT 121

Query: 119 DSQ-----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
            +Q       I  P   KP   G S    +++ D+ +   L +   ++  D+ + E ++ 
Sbjct: 122 AAQISRVTAGIGLPLFAKPASNGESFEAGIVRSDKDLRELLAEEGEYS-SDEFIAEPFLT 180

Query: 174 GIELTCGVMG----DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           G   T GV+       +L V E AV   +FY  E K       +  PA IP  +   +Q 
Sbjct: 181 GNTFTVGVLDIDGKIEALPVLE-AVSLREFYDSEAKQDPSLHEYRCPAPIPDSLRDRMQE 239

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           LA       GCRG++R DF+      +   LE+N  PG+T       MA  +G  +R ++
Sbjct: 240 LAVRVFTVCGCRGVARVDFMLSE--DRPVVLEVNTVPGLTLQGNLAAMAKASGLGYRRVV 297

Query: 290 LWMVEDA 296
             M++ A
Sbjct: 298 EIMLQSA 304


>gi|297748892|gb|ADI51438.1| UDP-N-acetylmuramate--alanine ligase [Chlamydia trachomatis D-EC]
 gi|297749772|gb|ADI52450.1| UDP-N-acetylmuramate--alanine ligase [Chlamydia trachomatis D-LC]
          Length = 833

 Score =  245 bits (627), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 78/331 (23%), Positives = 140/331 (42%), Gaps = 41/331 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------------------- 40
           + ++ GG S E E+S+ S K  A  L  + + VS   + R                    
Sbjct: 480 LGIICGGKSCEHEISVLSAKNIAKHLSKSFYDVSYFLITREGLWESVSSLETAEDSGKSV 539

Query: 41  -SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
               +     K D+   +LHG +GEDG +Q  LE +  PYT   I  SA++M+K+ +K+ 
Sbjct: 540 FDPEIAQRLEKVDVVLPILHGPYGEDGAMQGFLETIGKPYTGPAIAFSAIAMNKVFTKRF 599

Query: 100 VSSCGVPVCPSILV---------NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150
           +S  G+PV P + +         +++        S P  +K    GSS+G+  +     I
Sbjct: 600 MSDLGIPVVPYLPLTLAGWKQEQDKWLAHIVEAFSFPIFVKSSHLGSSIGVFEVHNV--I 657

Query: 151 PLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPK----SDFYSYELK 205
            L    + ++   + + +E+   G  E+   V+GD S       + +      F  Y+ K
Sbjct: 658 ELRDAINEAFMRDNDVFVEENRLGCKEIEVSVLGDGSGAFVVAGLHERRGSGGFIDYQEK 717

Query: 206 Y---SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
           Y      ++  V    +  +I +++   A   ++ +  +G  R DF  D      +  E+
Sbjct: 718 YGLSGKSSAQIVFDTDLSKEIQEQILEAADKIYRLLLGKGSCRIDFFVDEEGN-FWLSEM 776

Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           N  PGMT  S F       G+S+ +++  +V
Sbjct: 777 NPIPGMTETSPFLTSFIRKGWSYEQIVHQLV 807


>gi|294814275|ref|ZP_06772918.1| D-alanine--D-alanine ligase [Streptomyces clavuligerus ATCC 27064]
 gi|326442667|ref|ZP_08217401.1| D-alanine--D-alanine ligase [Streptomyces clavuligerus ATCC 27064]
 gi|294326874|gb|EFG08517.1| D-alanine--D-alanine ligase [Streptomyces clavuligerus ATCC 27064]
          Length = 310

 Score =  245 bits (626), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 90/307 (29%), Positives = 142/307 (46%), Gaps = 18/307 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDL--AFNVL 58
           +A+L GG S E + S  S  A   AL + G +   +D+            PD   AF   
Sbjct: 3   VAILAGGPSPEGQGSFLSADAAGQALRELGHETEVVDISVPDFW---KRLPDFEAAFIAG 59

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
           HG + EDG +Q +LE++ +PYT SG+LAS++ M K   K ++ + G+   P   V+R   
Sbjct: 60  HGWYAEDGKLQGLLEVMGLPYTGSGVLASSVGMHKPTFKSLMVAHGIETLPWEPVSRGAT 119

Query: 119 DSQ-----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
            +Q       I  P   KP   G S    +++ D+ +   L +   ++  D+ + E ++ 
Sbjct: 120 AAQISRVTAGIGLPLFAKPASNGESFEAGIVRSDKDLRELLAEEGEYS-SDEFIAEPFLT 178

Query: 174 GIELTCGVMG----DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           G   T GV+       +L V E AV   +FY  E K       +  PA IP  +   +Q 
Sbjct: 179 GNTFTVGVLDIDGKIEALPVLE-AVSLREFYDSEAKQDPSLHEYRCPAPIPDSLRDRMQE 237

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           LA       GCRG++R DF+      +   LE+N  PG+T       MA  +G  +R ++
Sbjct: 238 LAVRVFTVCGCRGVARVDFMLSE--DRPVVLEVNTVPGLTLQGNLAAMAKASGLGYRRVV 295

Query: 290 LWMVEDA 296
             M++ A
Sbjct: 296 EIMLQSA 302


>gi|255311596|ref|ZP_05354166.1| UDP-N-acetylmuramate-alanine ligase and D-Ala-D-Ala ligase
           [Chlamydia trachomatis 6276]
 gi|255317897|ref|ZP_05359143.1| UDP-N-acetylmuramate-alanine ligase and D-Ala-D-Ala ligase
           [Chlamydia trachomatis 6276s]
 gi|296437240|gb|ADH19410.1| bifunctional D-alanyl-alanine synthetase
           A/UDP-N-acetylmuramate--L-alanine ligase [Chlamydia
           trachomatis G/11222]
          Length = 803

 Score =  245 bits (626), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 78/331 (23%), Positives = 140/331 (42%), Gaps = 41/331 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------------------- 40
           + ++ GG S E E+S+ S K  A  L  + + VS   + R                    
Sbjct: 450 LGIICGGKSCEHEISVLSAKNIAKHLSKSFYDVSYFLITREGLWESVSSLETAEDSGKSV 509

Query: 41  -SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
               +     K D+   +LHG +GEDG +Q  LE +  PYT   I  SA++M+K+ +K+ 
Sbjct: 510 FDPEIAQRLEKVDVVLPILHGPYGEDGAMQGFLETIGKPYTGPAIAFSAIAMNKVFTKRF 569

Query: 100 VSSCGVPVCPSILV---------NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150
           +S  G+PV P + +         +++        S P  +K    GSS+G+  +     I
Sbjct: 570 MSDLGIPVVPYLPLTLAGWKQEQDKWLAHIVEAFSFPIFVKSSHLGSSIGVFEVHNV--I 627

Query: 151 PLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPK----SDFYSYELK 205
            L    + ++   + + +E+   G  E+   V+GD S       + +      F  Y+ K
Sbjct: 628 ELRDAINEAFMRDNDVFVEENRLGCKEIEVSVLGDGSGAFVVAGLHERRGSGGFIDYQEK 687

Query: 206 Y---SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
           Y      ++  V    +  +I +++   A   ++ +  +G  R DF  D      +  E+
Sbjct: 688 YGLSGKSSAQIVFDTDLSKEIQEQILEAADKIYRLLLGKGSCRIDFFVDEEGN-FWLSEM 746

Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           N  PGMT  S F       G+S+ +++  +V
Sbjct: 747 NPIPGMTETSPFLTSFIRKGWSYEQIVHQLV 777


>gi|76789504|ref|YP_328590.1| D-alanine--D-alanine ligase [Chlamydia trachomatis A/HAR-13]
 gi|237803192|ref|YP_002888386.1| bifunctional D-alanyl-alanine synthetase
           A/UDP-N-acetylmuramate--L-alanine ligase [Chlamydia
           trachomatis B/Jali20/OT]
 gi|237805113|ref|YP_002889267.1| bifunctional D-alanyl-alanine synthetase
           A/UDP-N-acetylmuramate--L-alanine ligase [Chlamydia
           trachomatis B/TZ1A828/OT]
 gi|76168034|gb|AAX51042.1| UDP-N-acetylmuramate--alanine ligase [Chlamydia trachomatis
           A/HAR-13]
 gi|231273413|emb|CAX10328.1| UDP-N-acetylmuramate--alanine ligase [Chlamydia trachomatis
           B/TZ1A828/OT]
 gi|231274426|emb|CAX11221.1| UDP-N-acetylmuramate--alanine ligase [Chlamydia trachomatis
           B/Jali20/OT]
 gi|296436311|gb|ADH18485.1| bifunctional D-alanyl-alanine synthetase
           A/UDP-N-acetylmuramate--L-alanine ligase [Chlamydia
           trachomatis G/9768]
 gi|296438170|gb|ADH20331.1| bifunctional D-alanyl-alanine synthetase
           A/UDP-N-acetylmuramate--L-alanine ligase [Chlamydia
           trachomatis G/11074]
 gi|297140671|gb|ADH97429.1| bifunctional D-alanyl-alanine synthetase
           A/UDP-N-acetylmuramate--L-alanine ligase [Chlamydia
           trachomatis G/9301]
          Length = 803

 Score =  245 bits (626), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 78/331 (23%), Positives = 140/331 (42%), Gaps = 41/331 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------------------- 40
           + ++ GG S E E+S+ S K  A  L  + + VS   + R                    
Sbjct: 450 LGIICGGKSCEHEISVLSAKNIAKHLSKSFYDVSYFLITREGLWESVSSLETAEDSGKSV 509

Query: 41  -SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
               +     K D+   +LHG +GEDG +Q  LE +  PYT   I  SA++M+K+ +K+ 
Sbjct: 510 FDPEIAQRLEKVDVVLPILHGPYGEDGAMQGFLETIGKPYTGPAIAFSAIAMNKVFTKRF 569

Query: 100 VSSCGVPVCPSILV---------NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150
           +S  G+PV P + +         +++        S P  +K    GSS+G+  +     I
Sbjct: 570 MSDLGIPVVPYLPLTLAGWKQEQDKWLAHIVEAFSFPMFVKSSHLGSSIGVFEVHNV--I 627

Query: 151 PLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPK----SDFYSYELK 205
            L    + ++   + + +E+   G  E+   V+GD S       + +      F  Y+ K
Sbjct: 628 ELRDAINEAFMRDNDVFVEENRLGCKEIEVSVLGDGSGAFVVAGLHERRGSGGFIDYQEK 687

Query: 206 Y---SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
           Y      ++  V    +  +I +++   A   ++ +  +G  R DF  D      +  E+
Sbjct: 688 YGLSGKSSAQIVFDTDLSKEIQEQILEAADKIYRLLLGKGSCRIDFFVDEEGN-FWLSEM 746

Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           N  PGMT  S F       G+S+ +++  +V
Sbjct: 747 NPIPGMTETSPFLTSFIRKGWSYEQIVHQLV 777


>gi|113970466|ref|YP_734259.1| D-alanyl-alanine synthetase A [Shewanella sp. MR-4]
 gi|123029617|sp|Q0HIB5|DDL_SHESM RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|113885150|gb|ABI39202.1| D-alanine--D-alanine ligase [Shewanella sp. MR-4]
          Length = 336

 Score =  245 bits (626), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 77/325 (23%), Positives = 142/325 (43%), Gaps = 37/325 (11%)

Query: 3   VLMGGISSEREVSLSSGKACASAL-EDAGFKVSQIDVDRSVGLVLAHL------------ 49
           +L GG S+E ++SL S     ++L +   F V ++ +D+      A              
Sbjct: 8   LLCGGGSAEHDISLLSANYFETSLAKSEQFNVLRVVLDKFGQYQTAAGDDCELTNNREIR 67

Query: 50  ---------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
                      D     +HG  GE G +Q+   L+++PY      AS+   +K+ +K   
Sbjct: 68  FRDETKAPWPVDYVIPCIHGYPGETGDIQSYFNLIQLPYFGCESEASSNCFNKITAKMWF 127

Query: 101 SSCGVPVCPSILVNRFTMDSQHLISPPY------VIKPLKGGSSLGIIVIKKDQSIPLDL 154
           S+ G+P  P I +N++  ++               +K    GSS+G   +  D S  +  
Sbjct: 128 SALGIPNTPYIFLNQYDDEAIAQTQAALENWGSIFVKAASQGSSVGCYKV--DDSSKVAG 185

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLN 210
           +   ++ +   +++E+ +   EL   V        +    EI    + FY+++ KY+  +
Sbjct: 186 VLKDAFGYAPYVIVEKTIKARELEVAVYEYQGEVVATLPGEIICDSNTFYTFDEKYAKSS 245

Query: 211 --STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268
              T V+   +P DI ++++  A  A + +  R +SR DF       ++   EIN  PG 
Sbjct: 246 KARTDVVAQNVPTDISEQIRAYAIKAFKGMKLRHLSRIDFFLT-QDNEILLNEINTFPGS 304

Query: 269 TPVSIFPEMAAYAGYSFRELLLWMV 293
           TP+S+FP+M    G+ F E L  ++
Sbjct: 305 TPISMFPKMLQNHGHDFTEYLSLVI 329


>gi|15605495|ref|NP_220281.1| bifunctional D-alanyl-alanine synthetase
           A/UDP-N-acetylmuramate--L-alanine ligase [Chlamydia
           trachomatis D/UW-3/CX]
 gi|6919928|sp|O84767|MUDD_CHLTR RecName: Full=Bifunctional enzyme MurC/Ddl; Includes: RecName:
           Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase;
           Includes: RecName: Full=D-alanine--D-alanine ligase;
           AltName: Full=D-Ala-D-Ala ligase; AltName:
           Full=D-alanylalanine synthetase
 gi|3329224|gb|AAC68357.1| UDP-N-acetylmuramate-alanine ligase/D-Ala-D-Ala Ligase [Chlamydia
           trachomatis D/UW-3/CX]
          Length = 803

 Score =  245 bits (625), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 78/331 (23%), Positives = 140/331 (42%), Gaps = 41/331 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------------------- 40
           + ++ GG S E E+S+ S K  A  L  + + VS   + R                    
Sbjct: 450 LGIICGGKSCEHEISVLSAKNIAKHLSKSFYDVSYFLITREGLWESVSSLETAEDSGKSV 509

Query: 41  -SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
               +     K D+   +LHG +GEDG +Q  LE +  PYT   I  SA++M+K+ +K+ 
Sbjct: 510 FDPEIAQRLEKVDVVLPILHGPYGEDGAMQGFLETIGKPYTGPAIAFSAIAMNKVFTKRF 569

Query: 100 VSSCGVPVCPSILV---------NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150
           +S  G+PV P + +         +++        S P  +K    GSS+G+  +     I
Sbjct: 570 MSDLGIPVVPYLPLTLAGWKQEQDKWLAHIVEAFSFPIFVKSSHLGSSIGVFEVHNV--I 627

Query: 151 PLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPK----SDFYSYELK 205
            L    + ++   + + +E+   G  E+   V+GD S       + +      F  Y+ K
Sbjct: 628 ELRDAINEAFMRDNDVFVEENRLGCKEIEVSVLGDGSGAFVVAGLHERRGSGGFIDYQEK 687

Query: 206 Y---SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
           Y      ++  V    +  +I +++   A   ++ +  +G  R DF  D      +  E+
Sbjct: 688 YGLSGKSSAQIVFDTDLSKEIQEQILEAADKIYRLLLGKGSCRIDFFVDEEGN-FWLSEM 746

Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           N  PGMT  S F       G+S+ +++  +V
Sbjct: 747 NPIPGMTETSPFLTSFIRKGWSYEQIVHQLV 777


>gi|166154104|ref|YP_001654222.1| UDP-N-acetylmuramate--alanine ligase [Chlamydia trachomatis 434/Bu]
 gi|166154979|ref|YP_001653234.1| UDP-N-acetylmuramate--alanine ligase [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
 gi|301335342|ref|ZP_07223586.1| bifunctional D-alanyl-alanine synthetase
           A/UDP-N-acetylmuramate--L-alanine ligase [Chlamydia
           trachomatis L2tet1]
 gi|165930092|emb|CAP03575.1| UDP-N-acetylmuramate--alanine ligase [Chlamydia trachomatis 434/Bu]
 gi|165930967|emb|CAP06529.1| UDP-N-acetylmuramate--alanine ligase [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
          Length = 803

 Score =  245 bits (625), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 78/331 (23%), Positives = 140/331 (42%), Gaps = 41/331 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------------------- 40
           + ++ GG S E E+S+ S K  A  L  + + VS   + R                    
Sbjct: 450 LGIICGGKSCEHEISVLSAKNIAKHLSKSFYDVSYFLITREGLWESVSSLETAEDSGKSV 509

Query: 41  -SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
               +     K D+   +LHG +GEDG +Q  LE +  PYT   I  SA++M+K+ +K+ 
Sbjct: 510 FDPEIAQRLEKVDVVLPILHGPYGEDGAMQGFLETIGKPYTGPAIAFSAIAMNKVFTKRF 569

Query: 100 VSSCGVPVCPSILV---------NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150
           +S  G+PV P + +         +++        S P  +K    GSS+G+  +     I
Sbjct: 570 MSDLGIPVVPYLPLTLAGWKQEQDKWLAHIVEAFSFPMFVKSSHLGSSIGVFEVHNV--I 627

Query: 151 PLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPK----SDFYSYELK 205
            L    + ++   + + +E+   G  E+   V+GD S       + +      F  Y+ K
Sbjct: 628 ELRDAINEAFMRDNDVFVEENRLGCKEIEVSVLGDGSGAFVIAGLHERRGSGGFIDYQEK 687

Query: 206 Y---SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
           Y      ++  V    +  +I +++   A   ++ +  +G  R DF  D      +  E+
Sbjct: 688 YGLSGKSSAQIVFDTDLSKEIQEQILEAADKIYRLLLGKGSCRIDFFVDEEGN-FWLSEM 746

Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           N  PGMT  S F       G+S+ +++  +V
Sbjct: 747 NPIPGMTETSPFLTSFIRKGWSYEQIVHQLV 777


>gi|153000567|ref|YP_001366248.1| D-alanyl-alanine synthetase A [Shewanella baltica OS185]
 gi|189083049|sp|A6WMZ6|DDL_SHEB8 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|151365185|gb|ABS08185.1| D-alanine--D-alanine ligase [Shewanella baltica OS185]
          Length = 337

 Score =  245 bits (625), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 77/325 (23%), Positives = 143/325 (44%), Gaps = 37/325 (11%)

Query: 3   VLMGGISSEREVSLSSGKACASAL-EDAGFKVSQIDVDRSVGLVLAHL------------ 49
           +L GG S+E ++SL S     ++L +   F V ++++D+      A              
Sbjct: 8   LLCGGGSAEHDISLMSANYFETSLAKSEQFSVLRVELDKFGQYRTAAGDDCELTNSREIR 67

Query: 50  ---------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
                      D     +HG  GE G +Q+   L+++PY      AS+   +K+ +K   
Sbjct: 68  FRDESKTPWPVDYVIPCIHGYPGETGDIQSYFNLIQLPYFGCESEASSNCFNKITAKMWF 127

Query: 101 SSCGVPVCPSILVNRFTMDSQHLISPPY------VIKPLKGGSSLGIIVIKKDQSIPLDL 154
           S+ G+P  P I +N+F   +               +K    GSS+G   +  D S  +  
Sbjct: 128 SALGIPNTPYIFLNQFDDAAIEQTQAALAQWGSIFVKAASQGSSVGCYKV--DDSAKVAG 185

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYSSLN 210
           +   ++ +   +++E+ +   EL   V   +  +  T   EI    + FY+++ KY+  +
Sbjct: 186 VLKDAFGYAPYVIVEKTIKARELEVAVYEYNGEVVATVPGEIICDTNTFYTFDEKYAKNS 245

Query: 211 --STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268
              T V+   +  +I ++++  A  A + +  R +SR DF       ++   EIN  PG 
Sbjct: 246 KARTDVVAQHVSAEISEQIRAYAIKAFKGMKLRHLSRIDFFLTA-DNEILLNEINTFPGS 304

Query: 269 TPVSIFPEMAAYAGYSFRELLLWMV 293
           TP+S+FP+M    G+ F E L  ++
Sbjct: 305 TPISMFPKMLQNHGHDFTEYLSLVI 329


>gi|119943830|ref|YP_941510.1| D-alanine--D-alanine ligase [Psychromonas ingrahamii 37]
 gi|119862434|gb|ABM01911.1| D-alanine--D-alanine ligase [Psychromonas ingrahamii 37]
          Length = 380

 Score =  245 bits (625), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 80/354 (22%), Positives = 145/354 (40%), Gaps = 64/354 (18%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           +AV+ GG S+E +VS+ S     + ++   + V    V +                    
Sbjct: 8   VAVVFGGKSTEHDVSIISAGHILANIDMEKYFVEPFYVKKDGTFADHQELTLCLENLLNE 67

Query: 46  -------------------------------LAHLKPDLAFNVLHGNFGEDGLVQAILEL 74
                                          +A  K D+ F VLHG  GEDG +Q +LE 
Sbjct: 68  HRDKIFPAMKEGEIELKKWIAKGTSSDFLGGIAGKKFDIVFPVLHGLNGEDGTIQGMLEF 127

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLIS 125
           + +PY   G+ ASA  +DK  +K +     +PV     V ++           D Q  ++
Sbjct: 128 MGVPYVGCGVSASAFCIDKEATKVICQVNDIPVMDYTAVKKYEWENSTENIINDIQKKMN 187

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMG- 183
            P+ +KP + GSS+GI   +    +   L    ++ +  ++++EQ V+   ELT GVMG 
Sbjct: 188 YPFYVKPARLGSSIGISRAENTVELKTSLKD--AFKYDCKVVVEQGVESPRELTVGVMGI 245

Query: 184 DASLDVTEIAVPKSD---FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           D  + ++ I         +++++ KY       ++PA +  +I + +++ + L  +    
Sbjct: 246 DDQVSLSAIGEFSRGSNLYFNFDSKYGKTGHKGLVPAPLEENIQEIIEKYSHLIFKKFEL 305

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            G +R D+       KV+  EIN  PG      F  +    G   ++ +   +E
Sbjct: 306 SGFARIDYFL--CGDKVYLNEINTMPGFETGDTFMRIWQNKGVDMQKFIDKAIE 357


>gi|217973465|ref|YP_002358216.1| D-alanyl-alanine synthetase A [Shewanella baltica OS223]
 gi|254767737|sp|B8E569|DDL_SHEB2 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|217498600|gb|ACK46793.1| D-alanine/D-alanine ligase [Shewanella baltica OS223]
          Length = 337

 Score =  245 bits (625), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 77/325 (23%), Positives = 143/325 (44%), Gaps = 37/325 (11%)

Query: 3   VLMGGISSEREVSLSSGKACASAL-EDAGFKVSQIDVDRSVGLVLAHL------------ 49
           +L GG S+E ++SL S     ++L +   F V ++++D+      A              
Sbjct: 8   LLCGGGSAEHDISLMSANYFETSLAKSEQFSVLRVELDKFGQYRTAAGDDCELTNSREIR 67

Query: 50  ---------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
                      D     +HG  GE G +Q+   L+++PY      AS+   +K+ +K   
Sbjct: 68  FRDESKTPWPVDYVIPCIHGYPGETGDIQSYFNLIQLPYFGCESEASSNCFNKITAKMWF 127

Query: 101 SSCGVPVCPSILVNRFTMDSQHLISPPY------VIKPLKGGSSLGIIVIKKDQSIPLDL 154
           S+ G+P  P I +N+F   +               +K    GSS+G   +  D S  +  
Sbjct: 128 SALGIPNTPYIFLNQFDDAAIEQTQTALAQWGSIFVKAASQGSSVGCYKV--DDSAKVAG 185

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYSSLN 210
           +   ++ +   +++E+ +   EL   V   +  +  T   EI    + FY+++ KY+  +
Sbjct: 186 VLKDAFGYAPYVIVEKTIKARELEVAVYEYNGEVVATVPGEIICDTNTFYTFDEKYAKNS 245

Query: 211 --STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268
              T V+   +  +I ++++  A  A + +  R +SR DF       ++   EIN  PG 
Sbjct: 246 KARTDVVAQHVSAEISEQIRAYAIKAFKGMKLRHLSRIDFFLTA-DNEILLNEINTFPGS 304

Query: 269 TPVSIFPEMAAYAGYSFRELLLWMV 293
           TP+S+FP+M    G+ F E L  ++
Sbjct: 305 TPISMFPKMLQNHGHDFTEYLSLVI 329


>gi|315937026|gb|ADU56035.1| hypothetical protein CA37-12 [uncultured organism CA37]
          Length = 368

 Score =  244 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 96/304 (31%), Positives = 148/304 (48%), Gaps = 18/304 (5%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62
           VL GG+S EREVSL SG+    AL      V   D+   +   L    P +   VLHGN 
Sbjct: 9   VLAGGLSLEREVSLRSGRRVFDALRGLDVDVEFGDLGPDLMRALIADPPSVVLPVLHGNP 68

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-- 120
           GEDG V+ +LEL+ +PY  +   A  L+ DK  +K +V+  G+    S+ + R       
Sbjct: 69  GEDGTVREVLELVGVPYVGASAEACRLAFDKPLAKALVARAGLGTPASVTLPREAFHDLG 128

Query: 121 --------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                      +  P  +KP  GGS+ G+  ++    +P  L+  + + + D  LIE+ V
Sbjct: 129 AAPLISLILKRLGLPLFVKPRAGGSAFGVGHVQDADQLPAALM--ACFAYHDTALIERAV 186

Query: 173 DGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
            G+E+  GV+    G  ++   EI VP+   Y Y   Y++  +    PA++       V 
Sbjct: 187 TGVEVAVGVVDLGEGPVAMPAVEI-VPRRGIYDYSAHYTAGATEFFCPARLSDRAAAAVA 245

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           + A  AH+A+G R +SR+D + D    ++F LE  V PG+T  S F    A  GY+F  +
Sbjct: 246 QAALTAHRALGLRDLSRTDLIVDK-DDQLFVLETAVAPGLTDTSTFAMGLAAKGYAFARV 304

Query: 289 LLWM 292
            L +
Sbjct: 305 WLQL 308


>gi|160875203|ref|YP_001554519.1| D-alanyl-alanine synthetase A [Shewanella baltica OS195]
 gi|189083050|sp|A9L0H9|DDL_SHEB9 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|160860725|gb|ABX49259.1| D-alanine--D-alanine ligase [Shewanella baltica OS195]
 gi|315267396|gb|ADT94249.1| D-alanine/D-alanine ligase [Shewanella baltica OS678]
          Length = 337

 Score =  244 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 77/325 (23%), Positives = 143/325 (44%), Gaps = 37/325 (11%)

Query: 3   VLMGGISSEREVSLSSGKACASAL-EDAGFKVSQIDVDRSVGLVLAHL------------ 49
           +L GG S+E ++SL S     ++L +   F V ++++D+      A              
Sbjct: 8   LLCGGGSAEHDISLMSANYFETSLAKSEQFSVLRVELDKFGQYRTAAGDDCELTNSREIR 67

Query: 50  ---------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
                      D     +HG  GE G +Q+   L+++PY      AS+   +K+ +K   
Sbjct: 68  FRDESKTPWPVDYVIPCIHGYPGETGDIQSYFNLIQLPYFGCESEASSNCFNKITAKMWF 127

Query: 101 SSCGVPVCPSILVNRFTMDSQHLISPPY------VIKPLKGGSSLGIIVIKKDQSIPLDL 154
           S+ G+P  P I +N+F   +               +K    GSS+G   +  D S  +  
Sbjct: 128 SALGIPNTPYIFLNQFDDAAIEQTQAALAQWGSIFVKAASQGSSVGCYKV--DDSDKVAG 185

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYSSLN 210
           +   ++ +   +++E+ +   EL   V   +  +  T   EI    + FY+++ KY+  +
Sbjct: 186 VLKDAFGYAPYVIVEKTIKARELEVAVYEYNGEVVATVPGEIICDTNTFYTFDEKYAKNS 245

Query: 211 --STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268
              T V+   +  +I ++++  A  A + +  R +SR DF       ++   EIN  PG 
Sbjct: 246 KARTDVVAQHVSAEISEQIRAYAIKAFKGMKLRHLSRIDFFLTA-DNEILLNEINTFPGS 304

Query: 269 TPVSIFPEMAAYAGYSFRELLLWMV 293
           TP+S+FP+M    G+ F E L  ++
Sbjct: 305 TPISMFPKMLQNHGHDFTEYLSLVI 329


>gi|126090206|ref|YP_001041687.1| D-alanyl-alanine synthetase A [Shewanella baltica OS155]
 gi|126174499|ref|YP_001050648.1| D-alanyl-alanine synthetase A [Shewanella baltica OS155]
 gi|125997704|gb|ABN61779.1| D-alanine--D-alanine ligase [Shewanella baltica OS155]
 gi|125999862|gb|ABN63932.1| hypothetical protein Sbal_4569 [Shewanella baltica OS155]
          Length = 337

 Score =  244 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 77/325 (23%), Positives = 143/325 (44%), Gaps = 37/325 (11%)

Query: 3   VLMGGISSEREVSLSSGKACASAL-EDAGFKVSQIDVDRSVGLVLAHL------------ 49
           +L GG S+E ++SL S     ++L +   F V ++++D+      A              
Sbjct: 8   LLCGGGSAEHDISLMSANYFETSLAKSEQFSVLRVELDKFGQYRTAAGDDSELTNSREIR 67

Query: 50  ---------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
                      D     +HG  GE G +Q+   L+++PY      AS+   +K+ +K   
Sbjct: 68  FRDESKTPWPVDYVIPCIHGYPGETGDIQSYFNLIQLPYFGCESEASSNCFNKITAKMWF 127

Query: 101 SSCGVPVCPSILVNRFTMDSQHLISPPY------VIKPLKGGSSLGIIVIKKDQSIPLDL 154
           S+ G+P  P I +N+F   +               +K    GSS+G   +  D S  +  
Sbjct: 128 SALGIPNTPYIFLNQFDDAAIEQTQAALAQWGSIFVKAASQGSSVGCYKV--DDSDKVAG 185

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYSSLN 210
           +   ++ +   +++E+ +   EL   V   +  +  T   EI    + FY+++ KY+  +
Sbjct: 186 VLKDAFGYAPYVIVEKTIKARELEVAVYEYNGEVVATVPGEIICDTNTFYTFDEKYAKNS 245

Query: 211 --STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268
              T V+   +  +I ++++  A  A + +  R +SR DF       ++   EIN  PG 
Sbjct: 246 KARTDVVAQHVSAEISEQIRAYAIKAFKGMKLRHLSRIDFFLTA-DNEILLNEINTFPGS 304

Query: 269 TPVSIFPEMAAYAGYSFRELLLWMV 293
           TP+S+FP+M    G+ F E L  ++
Sbjct: 305 TPISMFPKMLQNHGHDFTEYLSLVI 329


>gi|296313256|gb|ACZ97544.2| D-alanine-D-alanine ligase [Lactobacillus reuteri]
          Length = 301

 Score =  243 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 78/258 (30%), Positives = 134/258 (51%), Gaps = 15/258 (5%)

Query: 47  AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP 106
              + D  F V+HGN GEDG +Q + +LL  PY  S I ASA++ DK  +K++++  G+ 
Sbjct: 47  EQEEIDFFFPVIHGNLGEDGTIQGLFKLLNKPYVGSNISASAMAFDKDLTKKIITQAGIR 106

Query: 107 VCPSILVNRFTMDS------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160
             P +LV             +  +     IKP K GSS+GI  +   +     L  + ++
Sbjct: 107 NTPYVLVTPENRADYSWGRIEEQLGNLTFIKPAKQGSSVGIHRVTNAEEYEAAL--NDAF 164

Query: 161 NHGDQLLIEQYVD-GIELTCGVMGDASLDVT---EIAVPKSD-FYSYELKYSSLNS-THV 214
            +  ++L+EQ +D   E+   ++G+     +    + VP+ D FY YE K+   +     
Sbjct: 165 KYDYKVLVEQGIDRPQEVEISILGNEHPIASKLGAVRVPEDDLFYDYENKFVDASGVVFE 224

Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274
           LP K+P  +  E+  +A  A++A+G +G++R DFL D  +   +  E N  PG T +S++
Sbjct: 225 LPVKLPQYLVDEITDMALKAYKALGMKGLARIDFLVD-SNNVPYLGEPNTLPGFTNISLY 283

Query: 275 PEMAAYAGYSFRELLLWM 292
           P+M   +G S+ EL+  +
Sbjct: 284 PQMWEVSGISYSELIDRL 301


>gi|116490730|ref|YP_810274.1| D-alanine--D-alanine ligase [Oenococcus oeni PSU-1]
 gi|290890150|ref|ZP_06553232.1| hypothetical protein AWRIB429_0622 [Oenococcus oeni AWRIB429]
 gi|122277086|sp|Q04G13|DDL_OENOB RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|116091455|gb|ABJ56609.1| D-alanine--D-alanine ligase [Oenococcus oeni PSU-1]
 gi|290480194|gb|EFD88836.1| hypothetical protein AWRIB429_0622 [Oenococcus oeni AWRIB429]
          Length = 377

 Score =  243 bits (621), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 84/345 (24%), Positives = 158/345 (45%), Gaps = 52/345 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           + +  GG SSE +VS  S K    AL+   +++  + + +   ++               
Sbjct: 7   VGLFFGGNSSEHDVSKRSAKNYYDALDPEKYQIFPVLISKKGIMIDSETSKRVLFGEDED 66

Query: 46  -------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
                              + +LK D+ F  +HGN GEDG +  +  L+ IPY  SG+ A
Sbjct: 67  ELLAGLPNKNADIFGPIDSIRNLKLDVLFPSVHGNLGEDGTLAGLFRLMNIPYVGSGLRA 126

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILV-----NRFTMDS-QHLISPPYVIKPLKGGSSLG 140
            A+S DK+ +K++++  G+     I++     N+   DS    +     +K    GSS+G
Sbjct: 127 HAISFDKVITKELMTVNGIRNTKYIVIFQNDKNKPDWDSVSKQLGEVVFVKAANQGSSVG 186

Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAV----- 194
           +  +   +     L    S+ + ++LL+E+ V+   EL  G++G+  +  + I       
Sbjct: 187 VSRVTNAEEYENAL--RDSFQYDEKLLVEKAVESPTELEIGLLGNDRVITSPIGAHWAPG 244

Query: 195 --PKSDFYSYELKYSSLN-STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
               S ++ Y+ K+   +   + +PAKI     KE++ +A  A++ +G +G +R DFL  
Sbjct: 245 QDHGSGWFDYKNKFVDNSKMKYQIPAKISPAKSKELENMAVKAYKVLGIKGFARIDFLMS 304

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
               ++F  E N  PG T +S+FP +   AG +  +    +++ A
Sbjct: 305 K-DGEIFLSEPNTLPGNTNMSLFPILFEAAGMNRSQQAEKLIQLA 348


>gi|227488097|ref|ZP_03918413.1| D-alanyl-alanine synthetase A [Corynebacterium glucuronolyticum
           ATCC 51867]
 gi|227541494|ref|ZP_03971543.1| D-alanyl-alanine synthetase A [Corynebacterium glucuronolyticum
           ATCC 51866]
 gi|227091959|gb|EEI27271.1| D-alanyl-alanine synthetase A [Corynebacterium glucuronolyticum
           ATCC 51867]
 gi|227182776|gb|EEI63748.1| D-alanyl-alanine synthetase A [Corynebacterium glucuronolyticum
           ATCC 51866]
          Length = 315

 Score =  243 bits (621), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 70/261 (26%), Positives = 124/261 (47%), Gaps = 18/261 (6%)

Query: 51  PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            D+ F VLHG  GEDG +Q + EL  +PY  +G+LASA  MDK  +K++    G+P+   
Sbjct: 60  VDVIFPVLHGLNGEDGTIQGLFELSGVPYVGNGVLASACGMDKQYTKKLCKLAGLPIGKD 119

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN--------- 161
           +++          ++ P  +KP +GGSS+GI  ++    I   +  +   +         
Sbjct: 120 LVLEGGEEFIPGTLNFPVYVKPARGGSSIGISRVEDVSGIDEAIRLARESDPKVIIEEEI 179

Query: 162 --HGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI 219
                +  + +Y DG      V+  A  ++      ++ FY +  KY     +  +PA++
Sbjct: 180 KGIEVECGVLEYPDGR-----VVAAAPAELIGTEDGEAGFYDFSAKYLDGQVSAHIPARL 234

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279
             +    V+ +A    +A+ C G++R DF            EIN  PG TP+S++P++  
Sbjct: 235 SEEETARVKEIAVQTFKALNCNGLARVDFFVTEHG--PVINEINTLPGFTPISMYPQVFQ 292

Query: 280 YAGYSFRELLLWMVEDASCLR 300
             G S+ +LL  ++E A   +
Sbjct: 293 AEGISYGDLLHILIEQALATK 313


>gi|163750869|ref|ZP_02158103.1| D-alanylalanine synthetase [Shewanella benthica KT99]
 gi|161329427|gb|EDQ00422.1| D-alanylalanine synthetase [Shewanella benthica KT99]
          Length = 336

 Score =  243 bits (621), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 75/324 (23%), Positives = 134/324 (41%), Gaps = 36/324 (11%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGF-KVSQIDVD---------------------R 40
           ++ GG   E  +SL S K   ++L       V ++++D                     R
Sbjct: 8   LICGGGGDEHAISLMSAKFFETSLAKLAHINVLKVELDAQGHYRTSDGELCELTNRKQIR 67

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
                 A    D     +HG  GE G +Q+  EL+ +PY      AS    +K+ +K   
Sbjct: 68  FDDDNKACWPVDYVIPCIHGYPGETGDIQSYFELINLPYFGCDSEASRNCFNKITAKMWF 127

Query: 101 SSCGVPVCPSILVNRFTMDSQHLISPPY------VIKPLKGGSSLGIIVIKKDQSIPLDL 154
           S+ G+P  P I +N F  D+ +             IK    GSS+G   +   + +   L
Sbjct: 128 SALGIPNTPYIFLNDFNDDAINQAQQALASWGSIFIKAASQGSSVGCYRVDSQEELTEYL 187

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLN 210
            Q  ++ +   +++E+ ++  EL   V        +    EI    + FYS++ KY+  +
Sbjct: 188 QQ--AFTYSPYVIVEKTIEARELEVAVYEKDGEIIATQPGEIICATNTFYSFDEKYAENS 245

Query: 211 -STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
            +   + A I   +   ++  A    + +    +SR DF     + ++   EIN  PG+T
Sbjct: 246 QAETKVVADISESVSLRIREYAVKVFKGMKLSHLSRIDFFLTE-NNEILLNEINTFPGLT 304

Query: 270 PVSIFPEMAAYAGYSFRELLLWMV 293
           P+S+FP+M  + G  F + L   +
Sbjct: 305 PISMFPKMLQHHGDDFSDYLSHNI 328


>gi|114047700|ref|YP_738250.1| D-alanyl-alanine synthetase A [Shewanella sp. MR-7]
 gi|123326497|sp|Q0HUL2|DDL_SHESR RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|113889142|gb|ABI43193.1| D-alanine--D-alanine ligase [Shewanella sp. MR-7]
          Length = 336

 Score =  243 bits (621), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 76/326 (23%), Positives = 141/326 (43%), Gaps = 37/326 (11%)

Query: 3   VLMGGISSEREVSLSSGKACASAL-EDAGFKVSQIDVDRSVGLVLAHL------------ 49
           +L GG S+E ++SL S     ++L +     V ++ +D+      A              
Sbjct: 8   LLCGGGSAEHDISLLSANYFETSLAKSEQVNVLRVVLDKFGQYQTAAGDDCELTNNREIR 67

Query: 50  ---------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
                      D     +HG  GE G +Q+   L+++PY      AS+   +K+ +K   
Sbjct: 68  FRDETKAPWPVDYVIPCIHGYPGETGDIQSYFNLIQLPYFGCESEASSNCFNKITAKMWF 127

Query: 101 SSCGVPVCPSILVNRFTMDSQHLISPPY------VIKPLKGGSSLGIIVIKKDQSIPLDL 154
           S+ G+P  P I +N++  ++               +K    GSS+G   +  D S  +  
Sbjct: 128 SALGIPNTPYIFLNQYDDEAIAQTQAALENWGSIFVKAASQGSSVGCYKV--DDSSKVAG 185

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLN 210
           +   ++ +   +++E+ +   EL   V        +    EI    + FY+++ KY+  +
Sbjct: 186 VLKDAFGYAPYVIVEKTIKARELEVAVYEYQGEVVATLPGEIICDSNTFYTFDEKYAKSS 245

Query: 211 --STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268
              T V+   +P DI  +++  A  A + +  R +SR DF       ++   EIN  PG 
Sbjct: 246 KARTDVVAQNVPADISDQIRAYAIKAFKGMKLRHLSRIDFFLT-QDNEILLNEINTFPGS 304

Query: 269 TPVSIFPEMAAYAGYSFRELLLWMVE 294
           TP+S+FP+M    G+ F E L  +++
Sbjct: 305 TPISMFPKMLQNHGHDFTEYLSLVIK 330


>gi|222159959|gb|ACM47313.1| VanA [Staphylococcus haemolyticus]
          Length = 249

 Score =  243 bits (621), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 71/238 (29%), Positives = 118/238 (49%), Gaps = 10/238 (4%)

Query: 51  PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            D+AF+ LHG  GEDG +Q + EL  IP+    I +SA+ MDK  +  V  + G+     
Sbjct: 15  VDVAFSALHGKSGEDGSIQGLFELSGIPFVGCDIQSSAICMDKSLTYIVAKNAGIATPAF 74

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            ++N+         + P  +KP + GSS G+  +     +  D    S+  +  ++LIEQ
Sbjct: 75  WVINKDDRPVAATFTYPVFVKPARSGSSFGVKKVNSADEL--DYAIESARQYDSKILIEQ 132

Query: 171 YVDGIELTCGVMGD-ASLDVTEIAVPKSDFYSY------ELKYSSLNSTHVLPAKIPLDI 223
            V G E+ C V+G+ A+L V E+   +  +  +      E +  S N+   +PA +  + 
Sbjct: 133 AVSGCEVGCAVLGNSAALVVGEVDQIRLQYGIFRIHQEVEPEKGSENAVITVPADLSAEE 192

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYA 281
              +Q  A   ++A+GCRG++R D      + ++   E+N  PG T  S +P M A A
Sbjct: 193 RGRIQETAKKIYKALGCRGLARVDMFL-QDNGRIVLNEVNTLPGFTSYSRYPRMMAAA 249


>gi|8671343|emb|CAB95026.1| D-alanine-D-alanine ligase [Prochlorococcus marinus]
          Length = 247

 Score =  243 bits (620), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 76/249 (30%), Positives = 123/249 (49%), Gaps = 15/249 (6%)

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118
             GEDG +Q   +L   PY  SG+L SAL MDK+  K   S+ G+P      ++   +  
Sbjct: 1   PNGEDGSIQGFFQLTGKPYVGSGVLGSALGMDKIAMKAAFSAAGLPQVNYCEIHSIDLLD 60

Query: 119 ---------DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
                      +  +  P  IKP   GSS+GI      + +   L  ++      ++++E
Sbjct: 61  KKRLSYLIQKIETQLGYPCFIKPANLGSSVGISKAYDKKELLNGLDLAAQL--DSRIVVE 118

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPK--SDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227
           + +   EL C V+G   +  + +   +  SD+Y Y+ KYS  ++  ++PA IP  I KEV
Sbjct: 119 KNIKARELECAVIGKKQIKTSCVGEVRYSSDWYDYDSKYSKNSTKTLIPAPIPEKISKEV 178

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287
           Q L+ LA +AI   GI+R DF +D     ++  EIN  PG T  S++P +   +G    +
Sbjct: 179 QSLSILACKAISAEGIARVDFFYDEEKDSLWINEINTMPGFTEQSMYPMLWDASGIDISQ 238

Query: 288 LLLWMVEDA 296
           L+  ++E A
Sbjct: 239 LVARLIESA 247


>gi|227486334|ref|ZP_03916650.1| D-alanine--D-alanine ligase [Anaerococcus lactolyticus ATCC 51172]
 gi|227235745|gb|EEI85760.1| D-alanine--D-alanine ligase [Anaerococcus lactolyticus ATCC 51172]
          Length = 347

 Score =  243 bits (620), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 78/339 (23%), Positives = 144/339 (42%), Gaps = 47/339 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD-------- 52
           + +L GG SSE +++L S       L    ++   + +D+           D        
Sbjct: 4   VYILCGGPSSEHDIALRSALNIVKNLNKDKYEKKIVYIDKEGKFSPTFKDFDPADEFSLV 63

Query: 53  --------------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
                                     +   V+HG +GEDG +Q  L+ + + Y  +G+L+
Sbjct: 64  KKIDKSTQASIADFLLEVSKEDLENTIILPVVHGTYGEDGTIQGFLDAVGLKYIGNGLLS 123

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ------HLISPPYVIKPLKGGSSLG 140
           SA+ MDK+ S  +     +         +   D          +  P ++KP   GSS+G
Sbjct: 124 SAICMDKVTSNDIFEKSKLRQAKYKYCYKEDFDDDFMDSCIAYVGLPLIVKPSANGSSVG 183

Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD-ASLDVTEIA--VPKS 197
           +  ++  +      L++    +  +LL+E+ + G E+   V+GD  ++DV++ A  +   
Sbjct: 184 VSRVENKKDFKKAGLEAL--KYDRKLLVEELIIGQEIELAVLGDSDNIDVSDPAAYITDH 241

Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
            F  ++ KY S ++   LP K+  +  ++ +  A   ++A GC G +R D  +    R+ 
Sbjct: 242 VFLDWDAKYFSKSTREELPYKMDENDKQKAKDFARACYKAAGCEGFARVDIFY-GNDRQF 300

Query: 258 FWLEINVQPGMTPVSIFPEMAAYA-GYSFRELLLWMVED 295
           +  EIN  PG TP S F  MA       F  +L  +++D
Sbjct: 301 YINEINTFPGFTPSSFFARMAMNLYDVDFSSILDKLIDD 339


>gi|256826798|ref|YP_003150757.1| ATP-grasp enzyme, D-alanine-D-alanine ligase [Cryptobacterium
           curtum DSM 15641]
 gi|256582941|gb|ACU94075.1| ATP-grasp enzyme, D-alanine-D-alanine ligase [Cryptobacterium
           curtum DSM 15641]
          Length = 327

 Score =  243 bits (620), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 96/330 (29%), Positives = 157/330 (47%), Gaps = 39/330 (11%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG S ER +SL SGK    ALE+AG KV  +D  + +   L   +PD+A++ LHG
Sbjct: 3   VAVLMGGASFERAISLDSGKRVCEALEEAGHKVVPLDTTKDLVPTLRSERPDVAYSALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--------------GVP 106
             GEDG +Q++LE LEIP+  S       + +K      + S               GV 
Sbjct: 63  KHGEDGTIQSLLEFLEIPFVGSPAAVCHDTWNKATIPLALRSWAAGQGGMSSASYPQGVC 122

Query: 107 VCPSILVNRFTMDSQHLI------SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160
           +    + +     +  L         P  +KP  GGS+LG+  ++  + +   LL +   
Sbjct: 123 LARDAMKDMGAATAIDLFEQRIPGGYPLCVKPACGGSALGVHRVECVEDMGAALLDAL-- 180

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216
            + D++L+++++DG+E+   ++G+     +L   EI V +   Y  + + S     +  P
Sbjct: 181 TYDDEVLVQEWIDGVEVAVSILGNGWDAHALPPVEIIV-RDGLYDTDARLSDEAVDYYTP 239

Query: 217 AKIPL---------DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPG 267
            +             I  E++R +   ++A G   + R D ++D    +V  LE+NV PG
Sbjct: 240 VRPSSLSNNEADAQAIRAEIERASLEVYRAYGVCDMGRVDLIWDGAQARV--LEVNVSPG 297

Query: 268 MTPVSIFPEMAAYAGYSFRELLLWMV-EDA 296
           MT  S+FP     AG S   +L  +V E A
Sbjct: 298 MTERSLFPVACDAAGLSMTAVLDRLVCEHA 327


>gi|218681670|ref|ZP_03529471.1| D-alanine-D-alanine ligase protein [Rhizobium etli CIAT 894]
          Length = 320

 Score =  242 bits (619), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 80/264 (30%), Positives = 131/264 (49%), Gaps = 16/264 (6%)

Query: 50  KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109
             D+ F VLHG  GEDG VQ   E+  +P    GIL SA ++DK  +K+++ + G+PV  
Sbjct: 58  GIDILFPVLHGPHGEDGSVQGAAEVARVPLAGCGILGSAAALDKDIAKRLLRAAGLPVAR 117

Query: 110 SILVNRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
           ++ ++     S    +  +  P  IKP + GSS+G+  +   Q     L Q  ++ H   
Sbjct: 118 AVTIHAGAAPSLSVLEGELGLPLFIKPARQGSSVGVAKVHASQEFAAALEQ--AFRHDRT 175

Query: 166 LLIEQYVDGIELTCGVMGDASLD-----VTEIAVPKS-DFYSYELKY-SSLNSTHVLPAK 218
           LL E++V G E+   V+ D           EI   +S  FY+Y  KY     +   +PA 
Sbjct: 176 LLAEEFVAGREIEFSVLEDTDGKLFVSRPGEIVPAESHGFYNYNAKYIDENGAALKVPAD 235

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278
           +P +I   ++ +A  A +A+GC G++R DF       +    E+N  PG T +S++ +  
Sbjct: 236 LPSEIEAAMRDMAAKAFRAVGCDGMARVDFFLT-SDMRFVINELNTIPGFTDISMYSKAM 294

Query: 279 AYAGYSFRELLLWMVED--ASCLR 300
           A +G S+ E++  +V    A   R
Sbjct: 295 AASGVSYAEIIDRLVAHGMARARR 318


>gi|300172646|ref|YP_003771811.1| D-alanine--D-alanine ligase [Leuconostoc gasicomitatum LMG 18811]
 gi|299887024|emb|CBL90992.1| D-alanine--D-alanine ligase [Leuconostoc gasicomitatum LMG 18811]
          Length = 377

 Score =  242 bits (619), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 86/346 (24%), Positives = 153/346 (44%), Gaps = 56/346 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAG-FKVS------------------------- 34
           +A+L GG SSE +VS  S +    A++  G ++++                         
Sbjct: 6   VALLFGGNSSEHDVSKRSAQNFYDAIKATGKYEITVFAIAQNGYFLDPESSNRVLALEDE 65

Query: 35  ---------QIDVDRSVGLVLA---HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
                    +ID    +  + A       D+ F V+HGN GEDG +Q + +LL  PY  +
Sbjct: 66  QPIVDAYMAKIDTTDPLARISALSEGGDFDIFFPVVHGNLGEDGTLQGLFKLLNKPYVGA 125

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVN-----RFTMDS-QHLISPPYVIKPLKGG 136
            +   A+S DK  +K++++  G+     ++++      +T +     +     +K    G
Sbjct: 126 PLRGHAVSFDKAMTKELLTVNGIRNTKYVVLDPKTAKEWTWEKVVAALGDIVFVKAANQG 185

Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAV- 194
           SS+GI   K        L  S  +++  ++L+EQ V G  EL  GV+G+    V+EI   
Sbjct: 186 SSVGISRAKNAVEFEAALSDSFQYDY--KVLVEQAVKGSRELEVGVIGNEEPIVSEIGAH 243

Query: 195 ------PKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
                     +Y Y  K+   +     +PAK+P  +  EV+ +A  A++ +  RG +R D
Sbjct: 244 TLPNQGSGDAWYDYNNKFVDNSDVLFEIPAKLPESVTNEVKDMAIQAYKVLNLRGEARMD 303

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           FL D  +   +  E N  PG T +S+F  +  Y+     +L+  ++
Sbjct: 304 FLLDE-NNVPYLGEPNTLPGFTNMSLFKRLWDYSDIDNVKLVDMLI 348


>gi|170722840|ref|YP_001750528.1| D-alanine--D-alanine ligase [Pseudomonas putida W619]
 gi|169760843|gb|ACA74159.1| D-alanine--D-alanine ligase [Pseudomonas putida W619]
          Length = 304

 Score =  242 bits (619), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 83/299 (27%), Positives = 149/299 (49%), Gaps = 15/299 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALE--DAGFKVSQIDVDRSVGLVLAHLKPDLAFNVL 58
           +A++ GG SSEREVSL + +A + +LE      ++  I  D    L L   K    F  L
Sbjct: 5   IAIITGGDSSEREVSLQTSQAVSQSLEISQIRHEIFTIS-DYRELLRLDLAKFTRVFLAL 63

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT- 117
           HG FGE+G+ QA LE   IPY       SA+ M+K+ +K +    G+ V   +   R   
Sbjct: 64  HGGFGENGMAQAYLEGQGIPYNGPSPQTSAICMNKLLTKHIAMGLGINVANYLYSRRGDD 123

Query: 118 ---MDSQHLISPPYVIKPLKGGSSLGIIVIKK-DQSIPLDLLQSSSWNHGDQLLIEQYVD 173
                    +  P ++KP + G S G+ +++  +  +   +  ++ ++ G  +L+E+++ 
Sbjct: 124 LCVEKINEQLGTPCIVKPNREGCSFGVSLVRDLETDLQDAINAAAQFHTG--VLVEEFIS 181

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           G EL+      A+L +  +A  +S+F+SYE K+ S  +T  L   +    ++++    F 
Sbjct: 182 GPELSVCYFNKATLPIYSLAF-ESEFFSYEAKFISSKTTATLTT-LDRTTHQQLNNYCFA 239

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
             +A+      R+DF+      + + +E+N  PG+T  S+FP+     G  F +L+L +
Sbjct: 240 IAEALEL-DYFRADFIIHNT--EPYLIELNTLPGLTSHSLFPKACQQHGIEFDKLVLLL 295


>gi|304408639|ref|ZP_07390260.1| D-alanine/D-alanine ligase [Shewanella baltica OS183]
 gi|307305468|ref|ZP_07585216.1| D-alanine/D-alanine ligase [Shewanella baltica BA175]
 gi|304352460|gb|EFM16857.1| D-alanine/D-alanine ligase [Shewanella baltica OS183]
 gi|306911771|gb|EFN42196.1| D-alanine/D-alanine ligase [Shewanella baltica BA175]
          Length = 337

 Score =  242 bits (618), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 75/325 (23%), Positives = 142/325 (43%), Gaps = 37/325 (11%)

Query: 3   VLMGGISSEREVSLSSGKACASAL-EDAGFKVSQIDVDRSVGLVLAHL------------ 49
           +L GG S+E ++SL S     ++L +   F V ++++D+                     
Sbjct: 8   LLCGGGSAEHDISLMSANYFETSLAKSEQFSVLRVELDKFGQYRTTAGDDCELTNSREIR 67

Query: 50  ---------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
                      D     +HG  GE G +Q+   L+++PY      AS+   +K+ +K   
Sbjct: 68  FRDESKTPWPVDYVIPCIHGYPGETGDIQSYFNLIQLPYFGCESEASSNCFNKITAKMWF 127

Query: 101 SSCGVPVCPSILVNRFTMDSQHLISPPY------VIKPLKGGSSLGIIVIKKDQSIPLDL 154
           S+ G+P  P I +N+F   +               +K    GSS+G   +  D S  +  
Sbjct: 128 SALGIPNTPYIFLNQFDDAAIEQTQAALAQWGSIFVKAASQGSSVGCYKV--DDSDKVAG 185

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYSSLN 210
           +   ++ +   +++E+ +   EL   V   +  +  T   EI    + FY+++ KY+  +
Sbjct: 186 VLKDAFGYAPYVIVEKTIKARELEVAVYEYNGEVVATVPGEIICDTNTFYTFDEKYAKNS 245

Query: 211 --STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268
              T V+   +  +I ++++  +  A + +  R +SR DF       ++   EIN  PG 
Sbjct: 246 KARTDVVAQHVSAEISEQIRAYSIKAFKGMKLRHLSRIDFFLTA-DNEILLNEINTFPGS 304

Query: 269 TPVSIFPEMAAYAGYSFRELLLWMV 293
           TP+S+FP+M    G+ F E L  ++
Sbjct: 305 TPISMFPKMLQNHGHDFTEYLSLVI 329


>gi|268609111|ref|ZP_06142838.1| D-alanine--D-alanine ligase [Ruminococcus flavefaciens FD-1]
          Length = 357

 Score =  241 bits (617), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 74/347 (21%), Positives = 144/347 (41%), Gaps = 56/347 (16%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---------------- 45
           AV+ GG S E ++SL+S       + +  ++V  I + R    +                
Sbjct: 7   AVIFGGTSREHKLSLASAAEVIRNIPEDKYEVICIGITRKGRWLYFPGDVEDIPTGEWEQ 66

Query: 46  -------------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYT 80
                                        K D+ F V+ G  G DG +Q +L+L  IPY 
Sbjct: 67  DPDCTSAIISPDPLHRGIILIENGEAVVRKIDVVFPVVMGKHGADGTIQGLLDLSGIPYV 126

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--------DSQHLISPPYVIKP 132
             G+LA+A  MDK     V+    +      ++ +  +        +    +  P ++KP
Sbjct: 127 GCGVLAAASCMDKSHIHMVMDDYDIATADWRIITQREISEIDKRCHEIAGELGFPLIVKP 186

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192
            K G+S G         +   +    ++++ +++++E+YV G ++   V G  +   T I
Sbjct: 187 AKSGTSAGTGKADDLAQLIAAVKV--AFSNDNKVVVEKYVSGRKMEAAVFGYDTPFSTYI 244

Query: 193 AV---PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
                P   +   E+  S+ +   + PA I  ++   ++  A  A++A+GC+G++R DF 
Sbjct: 245 GEILDPDRVYDPTEVNQSTGDGLKI-PADISDELQASIRETAVKAYKAMGCKGLARLDFF 303

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                 ++   +I   PG+   S+FP++  + G S  + +  ++E A
Sbjct: 304 LT-DDGRLLLNKIGTSPGLRKNSVFPKLMEHMGISHEDFVDMLLEQA 349


>gi|323144949|ref|ZP_08079509.1| D-ala D-ala ligase N-terminal domain protein [Succinatimonas hippei
           YIT 12066]
 gi|322415228|gb|EFY06002.1| D-ala D-ala ligase N-terminal domain protein [Succinatimonas hippei
           YIT 12066]
          Length = 331

 Score =  241 bits (617), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 81/327 (24%), Positives = 151/327 (46%), Gaps = 33/327 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAG-FKVSQIDV---------------DRSVGL 44
           + +L GG  +E ++SL S       + + G + V + ++               D+    
Sbjct: 4   ILLLCGGDGAEHQISLISADFIEKKINEIGEYNVIRAEIHNKKFILKDGTAGYFDKDSRF 63

Query: 45  VLAHLKPDL--AFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS 102
           V      D+  A   +HG  GE G +Q+ LE+  IPY      AS    +K+ +K  +++
Sbjct: 64  VTGSDCLDIYCAVPCIHGVPGETGDIQSFLEIFNIPYIGCKSEASHNCFNKITTKLYLTA 123

Query: 103 CGVPVCPSILVNRFTMDSQHLISPP------YVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
             +P  P ++V R    S+              +K    GSS+G   + K + +   +++
Sbjct: 124 LNIPNTPFLIVPRQDELSKANALKAFDSWQDVYVKAASQGSSIGCYHVTKKEDLWDSVVE 183

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYSS--LN 210
           + +++    ++IE+ +   EL C     D ++ +T   EI +P + FY+++ KYS    +
Sbjct: 184 AFTFSED--VIIEKTIKHRELECAAYEIDGNIYITNPGEIIMPDNLFYTFDEKYSKDSGS 241

Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270
            T V P  +  +I + ++  A  A+  +  R +SR DF       ++   EIN  PGMTP
Sbjct: 242 VTTVEPQNLSDEIKQMIRDYARKAYLGLKLRDLSRIDFFLSDH-NEIIINEINTFPGMTP 300

Query: 271 VSIFPEMAAYAGYSFRELLLWMVEDAS 297
           +S+FP++  + G+   E L   +E A+
Sbjct: 301 ISMFPKLLEHNGHQMTEFLRQAIERAA 327


>gi|118586551|ref|ZP_01543993.1| peptidoglycan biosynthesis D-alanyl-D-alanine ligase A [Oenococcus
           oeni ATCC BAA-1163]
 gi|118432992|gb|EAV39716.1| peptidoglycan biosynthesis D-alanyl-D-alanine ligase A [Oenococcus
           oeni ATCC BAA-1163]
          Length = 377

 Score =  241 bits (617), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 84/345 (24%), Positives = 158/345 (45%), Gaps = 52/345 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           + +  GG SSE +VS  S K    AL+   +++  + + +   ++               
Sbjct: 7   VGLFFGGNSSEHDVSKRSAKNYYDALDPEKYQIFPVLISKKGIMIDSETSKRVLFGEDED 66

Query: 46  -------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
                              + +LK D+ F  +HGN GEDG +  +  L+ IPY  SG+ A
Sbjct: 67  ELLAGLPNKNADIFGPIDSIRNLKLDVLFPSVHGNLGEDGTLAGLFRLMNIPYVGSGLRA 126

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILV-----NRFTMDS-QHLISPPYVIKPLKGGSSLG 140
            A+S DK+ +K++++  G+     I++     N+   DS    +     +K    GSS+G
Sbjct: 127 HAISFDKVITKELMTVNGIRNTKYIVIFQNDKNKPDWDSVSKQLGEVVFVKAANQGSSVG 186

Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAV----- 194
           +  +   +     L    S+ + ++LL+E+ V+   EL  G++G+  +  + I       
Sbjct: 187 VSRVANAEEYENAL--RDSFQYDEKLLVEKAVESPTELEIGLLGNDRVITSPIGAHWAPG 244

Query: 195 --PKSDFYSYELKYSSLN-STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
               S ++ Y+ K+   +   + +PAKI     KE++ +A  A++ +G +G +R DFL  
Sbjct: 245 QDHGSGWFDYKNKFVDNSKMKYQIPAKISPAKSKELENMAVKAYKVLGIKGFARIDFLMS 304

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
               ++F  E N  PG T +S+FP +   AG +  +    +++ A
Sbjct: 305 K-DGEIFLSEPNTLPGNTNMSLFPILFEAAGMNRSQQAEKLIQLA 348


>gi|29840620|ref|NP_829726.1| UDP-N-acetylmuramate--alanine ligase/D-alanine--D-alanine ligase
           [Chlamydophila caviae GPIC]
 gi|41017332|sp|Q821S4|MUDD_CHLCV RecName: Full=Bifunctional enzyme MurC/Ddl; Includes: RecName:
           Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase;
           Includes: RecName: Full=D-alanine--D-alanine ligase;
           AltName: Full=D-Ala-D-Ala ligase; AltName:
           Full=D-alanylalanine synthetase
 gi|29834970|gb|AAP05604.1| UDP-N-acetylmuramate--alanine ligase/D-alanine--D-alanine ligase
           [Chlamydophila caviae GPIC]
          Length = 811

 Score =  241 bits (616), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 83/335 (24%), Positives = 137/335 (40%), Gaps = 46/335 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------------------- 40
           + V+ GG S E +VSL S +     L    + V    ++R                    
Sbjct: 454 VGVVCGGQSCEHDVSLLSARNVVQYLSPQHYDVQYFVINRQGLWSQVANLDAGSDYNSKN 513

Query: 41  ----SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRS 96
               S  +  A    D    +LHG FGEDG +Q  LE+   PY    +L SA+SMDK+ +
Sbjct: 514 YHVLSSKIAEALANLDFVLPILHGPFGEDGTLQGFLEIANKPYGGPSLLFSAISMDKIMT 573

Query: 97  KQVVSSCGVPVCPSILVNRFTMDSQHLI---------SPPYVIKPLKGGSSLGIIVIKKD 147
           K++ +S GVPV P   +   T      +         + P  +K    GSS+G+  +  +
Sbjct: 574 KRLAASVGVPVVPYQPLTLPTWKRTPELCMRRILETFTFPMFVKTAHLGSSIGVFEVHNE 633

Query: 148 QSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKS-----DFYS 201
             +   +  S ++ +   + IE+   G  E+    +GD +     I+ P        F  
Sbjct: 634 TELKAKI--SEAFLYDTDVFIEESRLGSREIEVSCLGD-ACSCYYISEPHERRGSKGFIG 690

Query: 202 YELKYSSL---NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
           YE KY      ++T      +  +    V+ L    ++ I  +G  R DF  D      +
Sbjct: 691 YEEKYGFNGKSSATIQYDLNLSEESKTRVKELTERVYRVIQGKGSCRIDFFLDREGN-FW 749

Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
             E+N  PGMT  S F    A  G++F +++  ++
Sbjct: 750 LSEMNPIPGMTKSSPFLHDFARLGWTFEQIVHQLI 784


>gi|312198489|ref|YP_004018550.1| D-alanine--D-alanine ligase [Frankia sp. EuI1c]
 gi|311229825|gb|ADP82680.1| D-alanine--D-alanine ligase [Frankia sp. EuI1c]
          Length = 318

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 91/301 (30%), Positives = 143/301 (47%), Gaps = 16/301 (5%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62
           VL GG+S EREVSL SG+     L+  G  V   DVD S    L    P +   VLHG  
Sbjct: 9   VLAGGLSPEREVSLRSGRRLCDELDRIGVDVELRDVDGSTLPALDADPPAVVIPVLHGTS 68

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ- 121
           GEDG ++ +L+L  +PY  +   A   + DK  +K  +S+ G+   P++ + R       
Sbjct: 69  GEDGTIREVLDLYGLPYVGATPAACRGAFDKATAKAALSAAGIATPPAVTLPREAFHDLG 128

Query: 122 ---------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                      +  P V+KP  GGS+ G+  ++    +   L+  + + + D  LIE+ V
Sbjct: 129 AAALIDRVVTRLGLPLVVKPRAGGSAFGVGRVEDAGQLAEALM--ACFGYHDCALIERAV 186

Query: 173 DGIELTCGVMGDASLDVTEIAV---PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
            G+E+  GV+      VT  AV   P +  Y Y  +Y+   +T  +PA++  D+ +    
Sbjct: 187 AGVEIAVGVVDTGDGPVTLPAVEIQPVTGVYDYAARYTPGATTFHIPARLDEDVLRAAAA 246

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
            A  AH+ +  R +SR+D + D       +LE+NV PG+T  S +P     AG     + 
Sbjct: 247 AAVAAHRVLDLRDLSRTDLIIDA-DGVAQFLEVNVAPGLTATSTWPMALKAAGLDLAVVC 305

Query: 290 L 290
            
Sbjct: 306 R 306


>gi|33242268|ref|NP_877209.1| UDP-N-acetylmuramate--alanine ligase [Chlamydophila pneumoniae
           TW-183]
 gi|33236779|gb|AAP98866.1| UDP-N-acetylmuramate--alanine ligase [Chlamydophila pneumoniae
           TW-183]
          Length = 809

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 81/337 (24%), Positives = 143/337 (42%), Gaps = 45/337 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           + ++ GG S E ++SL S +  +  +    + VS   ++R                    
Sbjct: 454 IGLVCGGKSCEHDISLLSAQHVSKYISPEFYDVSYFIINRQGLWRTGKDFPHLIEETQGD 513

Query: 49  -----------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSK 97
                       K D  F VLHG FGEDG +Q   E+L  PY       +A +MDK+ +K
Sbjct: 514 SPLSSEIASALAKVDCLFPVLHGPFGEDGTIQGFFEILGKPYAGPSPSLAATAMDKLLTK 573

Query: 98  QVVSSCGVPVCPSILVNRFTMDSQHLI---------SPPYVIKPLKGGSSLGIIVIKKDQ 148
           ++ S+ GVPV P   +N         +         S P ++K    GSS+GI +++  +
Sbjct: 574 RIASAVGVPVVPYQPLNLCFWKRNPELCIQNLIETFSFPMIVKTAHLGSSIGIFLVRDKE 633

Query: 149 SIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPK----SDFYSYE 203
            +   +  S ++ +   + +E+   G  E+    +G +S         +    S F  Y+
Sbjct: 634 ELQEKI--SEAFLYDTDVFVEESRLGSREIEVSCIGHSSSWYCMAGPNERCGASGFIDYQ 691

Query: 204 LKYSSLN---STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260
            KY       +      ++  +    V+ LA   ++A+  +G +R DF  D      +WL
Sbjct: 692 EKYGFDGIDCAKISFDLQLSQESLDCVRELAERVYRAMQGKGSARIDFFLDEEGN--YWL 749

Query: 261 -EINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            E+N  PGMT  S F +   +AG++  +++   + DA
Sbjct: 750 SEVNPIPGMTAASPFLQAFVHAGWTQEQIVDHFIIDA 786


>gi|120599029|ref|YP_963603.1| D-alanyl-alanine synthetase A [Shewanella sp. W3-18-1]
 gi|189083057|sp|A1RK54|DDL_SHESW RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|120559122|gb|ABM25049.1| D-alanine--D-alanine ligase [Shewanella sp. W3-18-1]
          Length = 337

 Score =  240 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 76/327 (23%), Positives = 146/327 (44%), Gaps = 37/327 (11%)

Query: 3   VLMGGISSEREVSLSSGKACASAL-EDAGFKVSQIDVDRSVGLVLAHL------------ 49
           +L GG S+E ++SL S     S+L +   F V ++++D+      A              
Sbjct: 8   LLCGGGSAEHDISLMSANYFESSLAKSDQFSVLRVELDKLGQYRTAAGDECELTNNREIR 67

Query: 50  ---------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
                      D     +HG  GE G +Q+   L+++PY      AS+   +K+ +K   
Sbjct: 68  FRDETKAPWPVDYVIPCIHGYPGETGDIQSYFNLIQLPYFGCESEASSNCFNKITAKMWF 127

Query: 101 SSCGVPVCPSILVNRFTMDSQHLISPPY------VIKPLKGGSSLGIIVIKKDQSIPLDL 154
           S+ G+P  P I ++++  ++               IK    GSS+G   +  D S  +  
Sbjct: 128 SALGIPNTPYIFLHQYDDEAISQAQTALANWGSIFIKAASQGSSVGCYKV--DDSSKVAQ 185

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYSSLN 210
           +   ++ +   +++E+ +   EL   V   +  +  T   EI    + FY+++ KY+  +
Sbjct: 186 VLKDAFGYAPYVVVEKTIKARELEVAVYEYNGEIVATLPGEIICDTNTFYTFDEKYAKSS 245

Query: 211 --STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268
              T V+   + +++ ++++  A  A + +  R +SR DF       ++   EIN  PG 
Sbjct: 246 KARTDVVAKDVSVELSEQIRAYAIKAFKGMKLRHLSRIDFFLTA-ENEILLNEINTFPGS 304

Query: 269 TPVSIFPEMAAYAGYSFRELLLWMVED 295
           TP+S+FP+M    G+ F E L  ++ +
Sbjct: 305 TPISMFPKMLQNHGHDFTEYLSLVINN 331


>gi|294141187|ref|YP_003557165.1| D-alanine--D-alanine ligase [Shewanella violacea DSS12]
 gi|293327656|dbj|BAJ02387.1| D-alanine--D-alanine ligase [Shewanella violacea DSS12]
          Length = 336

 Score =  240 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 75/324 (23%), Positives = 137/324 (42%), Gaps = 36/324 (11%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGF-KVSQIDVD---------------------R 40
           ++ GG   E  +SL S K   ++L       + +I++D                     R
Sbjct: 8   LICGGGGDEHAISLMSAKFFETSLAKLAHINLLKIELDAQGHYRTQAGELCELTNRKQIR 67

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
              +  A    D     +HG  GE G +Q+  EL+++PY      AS    +K+ +K   
Sbjct: 68  FDDVNKASWPVDYVIPCIHGYPGETGDIQSYFELIKLPYFGCDSEASRNCFNKVTAKMWF 127

Query: 101 SSCGVPVCPSILVNRFTMDSQHLISPPY------VIKPLKGGSSLGIIVIKKDQSIPLDL 154
           S+ G+P  P I +N F  D+ +             IK    GSS+G   +   + +   L
Sbjct: 128 SALGIPNTPYIFLNDFNDDAINQAQQALASWGSIFIKAASQGSSVGCYRVDSPEELTESL 187

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLN 210
            Q  ++ +   +++E+ ++  EL   V        +    EI    + FY+++ KY+  +
Sbjct: 188 KQ--AFTYSPYVIVEKTIEARELEVAVYEKDGEIIATQPGEIICGTNTFYTFDEKYAENS 245

Query: 211 -STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
            +   + A I   + +E++  A    + +    +SR DF       ++   EIN  PG+T
Sbjct: 246 QAETKVVADISESVSQEIREYAVKVFKGMKLSHLSRIDFFLTA-DNEILLNEINTFPGLT 304

Query: 270 PVSIFPEMAAYAGYSFRELLLWMV 293
           P+S+FP+M    G +F + L   +
Sbjct: 305 PISMFPKMLQNHGDNFSDYLNHNI 328


>gi|24373771|ref|NP_717814.1| D-alanyl-alanine synthetase A [Shewanella oneidensis MR-1]
 gi|39930896|sp|Q8EEZ2|DDL_SHEON RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|24348157|gb|AAN55258.1|AE015664_1 D-alanine--D-alanine ligase [Shewanella oneidensis MR-1]
          Length = 336

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 75/327 (22%), Positives = 142/327 (43%), Gaps = 37/327 (11%)

Query: 3   VLMGGISSEREVSLSSGKACASAL-EDAGFKVSQIDVDRSVGLVLAHL------------ 49
           +L GG S+E ++SL S     ++L +   F V ++ +D+      A              
Sbjct: 8   LLCGGGSAEHDISLLSANYFETSLAKSEQFNVLRVVLDKFGQYQTAAGDDCELTNNREIR 67

Query: 50  ---------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
                      D     +HG  GE G +Q+   L+++PY      AS+   +K+ +K   
Sbjct: 68  FRDESKAPWPVDYVIPCIHGYPGETGDIQSYFNLIQLPYFGCESEASSNCFNKITAKMWF 127

Query: 101 SSCGVPVCPSILVNRFTMDSQHLISPPY------VIKPLKGGSSLGIIVIKKDQSIPLDL 154
           S+ G+P  P I +N++  ++               +K    GSS+G   +  D++  +  
Sbjct: 128 SALGIPNTPYIFLNQYDDEAIAQTQAALEKWGSIFVKAASQGSSVGCYKV--DEASKVLG 185

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLN 210
           +   ++ +   +++E+ +   EL   V        +    EI    + FY+++ KY+  +
Sbjct: 186 VLKDAFGYAPYVIVEKTIKARELEVAVYEYQGEVIATLPGEIICDSNTFYTFDEKYAKSS 245

Query: 211 --STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268
              T V+   +P DI  +++  A  A + +  R +SR DF       ++   EIN  PG 
Sbjct: 246 KARTDVVAQNVPTDISDQIRAYAIKAFKGMKLRHLSRIDFFLTA-DNEILLNEINTFPGS 304

Query: 269 TPVSIFPEMAAYAGYSFRELLLWMVED 295
           TP+S+FP+M    G+ F + L  ++  
Sbjct: 305 TPISMFPKMLQNHGHDFTQYLSLVINS 331


>gi|269302694|gb|ACZ32794.1| UDP-N-acetylmuramate--alanine ligase/D-alanine--D-alanine ligase
           [Chlamydophila pneumoniae LPCoLN]
          Length = 809

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 81/337 (24%), Positives = 144/337 (42%), Gaps = 45/337 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           + ++ GG S E ++SL S +  +  +    + VS   ++R                    
Sbjct: 454 IGLVCGGKSCEHDISLLSAQHVSKYISPEFYDVSYFIINRQGLWRTGKDFPHLIEETQGD 513

Query: 49  -----------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSK 97
                       K D  F VLHG FGEDG +Q   E+L  PY    +  +A +MDK+ +K
Sbjct: 514 SPLSSEIASALAKVDCLFPVLHGPFGEDGTIQGFFEILGKPYAGPSLSLAATAMDKLLTK 573

Query: 98  QVVSSCGVPVCPSILVNRFTMDSQHLI---------SPPYVIKPLKGGSSLGIIVIKKDQ 148
           ++ S+ GVPV P   +N         +         S P ++K    GSS+GI +++  +
Sbjct: 574 RIASAVGVPVVPYQPLNLCFWKRNPELCIQNLIETFSFPMIVKTAHLGSSIGIFLVRDKE 633

Query: 149 SIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPK----SDFYSYE 203
            +   +  S ++ +   + +E+   G  E+    +G +S         +    S F  Y+
Sbjct: 634 ELQEKI--SEAFLYDTDVFVEESRLGSREIEVSCIGHSSSWYCMAGPNERCGASGFIDYQ 691

Query: 204 LKYSSLN---STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260
            KY       +      ++  +    V+ LA   ++A+  +G +R DF  D      +WL
Sbjct: 692 EKYGFDGIDCAKISFDLQLSQESLDCVRELAERVYRAMQGKGSARIDFFLDEEGN--YWL 749

Query: 261 -EINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            E+N  PGMT  S F +   +AG++  +++   + DA
Sbjct: 750 SEVNPIPGMTAASPFLQAFVHAGWTQEQVVDHFIIDA 786


>gi|222099401|ref|YP_002533969.1| D-alanine--D-alanine ligase [Thermotoga neapolitana DSM 4359]
 gi|221571791|gb|ACM22603.1| D-alanine--D-alanine ligase [Thermotoga neapolitana DSM 4359]
          Length = 251

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 79/251 (31%), Positives = 129/251 (51%), Gaps = 11/251 (4%)

Query: 50  KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109
           + DL FNVLHG FGEDG +Q+IL+ L + YT S   +S L  DK+ + + +    V +  
Sbjct: 3   EFDLVFNVLHGTFGEDGSLQSILDFLGVRYTGSDAFSSMLCFDKLLAYRFLKDF-VKIPN 61

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            + V      S   +  P V+KP + GSS+G+ + + D+     L +         ++++
Sbjct: 62  FVEVKEHIDSSP--VGYPCVVKPRREGSSIGVFICESDEEFQRALKEDLPL--YGSVIVQ 117

Query: 170 QYVDGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
           +Y+ G E+T  ++    G   L + E+   +  FY Y  KY+   +  +LPA +  +  +
Sbjct: 118 EYIPGREMTVSIIETEEGFKVLPILELRPKRRKFYDYIAKYTEGETEFLLPAPLKPEEEQ 177

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285
            V+  A  A    GCRG  R D +F   + + F+LEIN  PG+T +S  P  A  AG  F
Sbjct: 178 RVKETALRAFTEAGCRGFGRVDGIF--FNGEFFFLEINTVPGLTELSDLPASAKAAGIEF 235

Query: 286 RELLLWMVEDA 296
            EL+  +++ A
Sbjct: 236 EELIDIIIKSA 246


>gi|15618814|ref|NP_225100.1| muramate-Ala ligase & D-Ala-D-Ala ligase [Chlamydophila pneumoniae
           CWL029]
 gi|15836438|ref|NP_300962.1| muramate-Ala ligase/D-Ala-D-Ala ligase [Chlamydophila pneumoniae
           J138]
 gi|16752131|ref|NP_445498.1| UDP-N-acetylmuramate--alanine ligase/D-alanine--D-alanine ligase
           [Chlamydophila pneumoniae AR39]
 gi|6919933|sp|Q9Z701|MUDD_CHLPN RecName: Full=Bifunctional enzyme MurC/Ddl; Includes: RecName:
           Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase;
           Includes: RecName: Full=D-alanine--D-alanine ligase;
           AltName: Full=D-Ala-D-Ala ligase; AltName:
           Full=D-alanylalanine synthetase
 gi|4377225|gb|AAD19043.1| Muramate-Ala Ligase/D-Ala-D-Ala Ligase [Chlamydophila pneumoniae
           CWL029]
 gi|7189873|gb|AAF38741.1| UDP-N-acetylmuramate--alanine ligase/D-alanine--D-alanine ligase
           [Chlamydophila pneumoniae AR39]
 gi|8979279|dbj|BAA99113.1| muramate-Ala ligase/D-Ala-D-Ala ligase [Chlamydophila pneumoniae
           J138]
          Length = 809

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 81/337 (24%), Positives = 144/337 (42%), Gaps = 45/337 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           + ++ GG S E ++SL S +  +  +    + VS   ++R                    
Sbjct: 454 IGLVCGGKSCEHDISLLSAQHVSKYISPEFYDVSYFIINRQGLWRTGKDFPHLIEETQGD 513

Query: 49  -----------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSK 97
                       K D  F VLHG FGEDG +Q   E+L  PY    +  +A +MDK+ +K
Sbjct: 514 SPLSSEIASALAKVDCLFPVLHGPFGEDGTIQGFFEILGKPYAGPSLSLAATAMDKLLTK 573

Query: 98  QVVSSCGVPVCPSILVNRFTMDSQHLI---------SPPYVIKPLKGGSSLGIIVIKKDQ 148
           ++ S+ GVPV P   +N         +         S P ++K    GSS+GI +++  +
Sbjct: 574 RIASAVGVPVVPYQPLNLCFWKRNPELCIQNLIETFSFPMIVKTAHLGSSIGIFLVRDKE 633

Query: 149 SIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPK----SDFYSYE 203
            +   +  S ++ +   + +E+   G  E+    +G +S         +    S F  Y+
Sbjct: 634 ELQEKI--SEAFLYDTDVFVEESRLGSREIEVSCIGHSSSWYCMAGPNERCGASGFIDYQ 691

Query: 204 LKYSSLN---STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260
            KY       +      ++  +    V+ LA   ++A+  +G +R DF  D      +WL
Sbjct: 692 EKYGFDGIDCAKISFDLQLSQESLDCVRELAERVYRAMQGKGSARIDFFLDEEGN--YWL 749

Query: 261 -EINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            E+N  PGMT  S F +   +AG++  +++   + DA
Sbjct: 750 SEVNPIPGMTAASPFLQAFVHAGWTQEQIVDHFIIDA 786


>gi|146292900|ref|YP_001183324.1| D-alanyl-alanine synthetase A [Shewanella putrefaciens CN-32]
 gi|189083054|sp|A4Y6E2|DDL_SHEPC RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|145564590|gb|ABP75525.1| D-alanine--D-alanine ligase [Shewanella putrefaciens CN-32]
          Length = 337

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 76/327 (23%), Positives = 145/327 (44%), Gaps = 37/327 (11%)

Query: 3   VLMGGISSEREVSLSSGKACASAL-EDAGFKVSQIDVDRSVGLVLAHL------------ 49
           +L GG S+E ++SL S     S+L +   F V ++++D+      A              
Sbjct: 8   LLCGGGSAEHDISLMSANYFESSLAKSDQFSVLRVELDKLGQYRTAAGDDCELTNNREIR 67

Query: 50  ---------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
                      D     +HG  GE G +Q+   L+++PY      AS+   +K+ +K   
Sbjct: 68  FRDETKAPWPVDYVIPCIHGYPGETGDIQSYFNLIQLPYFGCESEASSNCFNKITAKMWF 127

Query: 101 SSCGVPVCPSILVNRFTMDSQHLISPPY------VIKPLKGGSSLGIIVIKKDQSIPLDL 154
           S+ G+P  P I ++++  ++               IK    GSS+G   +  D S  +  
Sbjct: 128 SALGIPNTPYIFLHQYDDEAISQAQTALANWGSIFIKAASQGSSVGCYKV--DDSSKVAQ 185

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYSSLN 210
           +   ++ +   +++E+ +   EL   V   +  +  T   EI    + FY+++ KY+  +
Sbjct: 186 VLKDAFGYAPYVVVEKTIKARELEVAVYEYNGEIVATLPGEIICDTNTFYTFDEKYAKSS 245

Query: 211 --STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268
              T V+   + +++ ++++  A  A + +  R +SR DF       ++   EIN  PG 
Sbjct: 246 KARTDVVAKDVSVELSEQIRAYAIKAFKGMKLRHLSRIDFFLTA-ENEILLNEINTFPGS 304

Query: 269 TPVSIFPEMAAYAGYSFRELLLWMVED 295
           TP+S+FP+M    G+ F E L  ++  
Sbjct: 305 TPISMFPKMLQNHGHDFTEYLSLVINS 331


>gi|148546755|ref|YP_001266857.1| D-alanine--D-alanine ligase [Pseudomonas putida F1]
 gi|148510813|gb|ABQ77673.1| D-alanine--D-alanine ligase [Pseudomonas putida F1]
          Length = 304

 Score =  240 bits (612), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 82/299 (27%), Positives = 147/299 (49%), Gaps = 15/299 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAG--FKVSQIDVDRSVGLVLAHLKPDLAFNVL 58
           +A++ GG SSEREVSL + +A + +L+      ++  I  D    L L   K    F  L
Sbjct: 5   IAIITGGNSSEREVSLQTSEAVSQSLKTLQISHEIFTIS-DYRELLSLDLAKFTRVFLAL 63

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT- 117
           HG FGE+G+ QA LE L IPY      ASA+ MDK+ +K +    G+ V   +       
Sbjct: 64  HGGFGENGMAQAYLEGLGIPYNGPSPQASAICMDKLLTKHIARGLGINVANYLYSKNGDD 123

Query: 118 ---MDSQHLISPPYVIKPLKGGSSLGIIVIKK-DQSIPLDLLQSSSWNHGDQLLIEQYVD 173
               +    +  P ++KP + G S G+ +++     +   +  ++ ++ G  +LIE+++ 
Sbjct: 124 VCFEEISERLGTPCIVKPNREGCSFGVSLVRDLKADLQPAINAAAKFHTG--ILIEEFIS 181

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           G EL+   +  ++L +  +   +SDF+SY+ K+ S  +   L   +    ++ V      
Sbjct: 182 GPELSVCYLNKSTLPIYTVEF-ESDFFSYDAKFISTKTNATLSI-LDRSTHQLVTNYCSA 239

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
             +A+      R+DF+      + + +E+N  PG+T  S+FP+     G  F +L+L +
Sbjct: 240 IAEALEL-DYFRADFIVHNT--EPYLIELNTLPGLTSHSLFPKACQQHGIEFDKLVLIL 295


>gi|319426570|gb|ADV54644.1| D-alanine/D-alanine ligase [Shewanella putrefaciens 200]
          Length = 337

 Score =  240 bits (612), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 76/327 (23%), Positives = 145/327 (44%), Gaps = 37/327 (11%)

Query: 3   VLMGGISSEREVSLSSGKACASAL-EDAGFKVSQIDVDRSVGLVLAHL------------ 49
           +L GG S+E ++SL S     S+L +   F V ++++D+      A              
Sbjct: 8   LLCGGGSAEHDISLMSANYFESSLAKSDQFSVLRVELDKLGQYRTAAGDDCELTNNREIR 67

Query: 50  ---------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
                      D     +HG  GE G +Q+   L+++PY      AS+   +K+ +K   
Sbjct: 68  FRDETKAPWPVDYVIPCIHGYPGETGDIQSYFNLIQLPYFGCESEASSNCFNKITAKMWF 127

Query: 101 SSCGVPVCPSILVNRFTMDSQHLISPPY------VIKPLKGGSSLGIIVIKKDQSIPLDL 154
           S+ G+P  P I ++++  ++               IK    GSS+G   +  D S  +  
Sbjct: 128 SALGIPNTPYIFLHQYDDEAISQAQTALADWGSIFIKAASQGSSVGCYKV--DDSSKVAQ 185

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYSSLN 210
           +   ++ +   +++E+ +   EL   V   +  +  T   EI    + FY+++ KY+  +
Sbjct: 186 VLKDAFGYAPYVVVEKTIKARELEVAVYEYNGEIVATLPGEIICDTNTFYTFDEKYAKSS 245

Query: 211 --STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268
              T V+   + +++ ++++  A  A + +  R +SR DF       ++   EIN  PG 
Sbjct: 246 KARTDVVAKDVSVELSEQIRAYAIKAFKGMKLRHLSRIDFFLTA-ENEILLNEINTFPGS 304

Query: 269 TPVSIFPEMAAYAGYSFRELLLWMVED 295
           TP+S+FP+M    G+ F E L  ++  
Sbjct: 305 TPISMFPKMLQNHGHDFTEYLSLVINS 331


>gi|220921310|ref|YP_002496611.1| D-alanyl-alanine synthetase A [Methylobacterium nodulans ORS 2060]
 gi|219945916|gb|ACL56308.1| D-alanine/D-alanine ligase [Methylobacterium nodulans ORS 2060]
          Length = 378

 Score =  240 bits (612), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 90/346 (26%), Positives = 149/346 (43%), Gaps = 55/346 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44
           +A+L GG S+E EVS+ S    A AL+   + V+ I +D+  G                 
Sbjct: 5   VALLFGGRSAEHEVSILSAGNVARALDPDRYAVTPIAIDKETGAWRLCPALAAGEAPAMG 64

Query: 45  ----------------------VLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
                                        D+   VLHG  GEDG VQ  L+L  +PY  S
Sbjct: 65  QDGPLVAFLPGGGGRLAILSDAAALSEPFDVVVPVLHGPNGEDGTVQGALDLAGVPYVGS 124

Query: 83  GILASALSMDKMRSKQVVSSCGVP-VCPSILVNR-----FTMDSQHLISPPYVIKPLKGG 136
           G++ SA +MDK  +K+++   G+P + P +         +   +  L S    +KP   G
Sbjct: 125 GVVGSAAAMDKDVAKRLMRDAGLPMIVPFLAATARRPVSYADAAAALESRTLFVKPANMG 184

Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASL-----DVT 190
           SS+G+  +        D   + ++ + +++LIE+ V    E+ C V+             
Sbjct: 185 SSVGVSRVTDPAQF--DRAAAHAFGYDEKILIERAVPQAREIECAVLETPEGELRVSPPG 242

Query: 191 EIAV-PKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           EIA      FY Y+ KY     +  ++PA +       ++ LA  A  A+ C G++R D 
Sbjct: 243 EIAPAAAHGFYGYDAKYLDPDGAALLIPAALDAARADRMRELAARAFAALACAGLARVDL 302

Query: 249 LFDPLS-RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
             DP     +F  E+N  PG T +S++P++   AG +   L+  ++
Sbjct: 303 FLDPADPAGIFVNEVNTLPGFTAISMYPKLWDAAGLAPPALMDALI 348


>gi|329943199|ref|ZP_08291973.1| UDP-N-acetylmuramate--alanine ligase [Chlamydophila psittaci Cal10]
 gi|332287779|ref|YP_004422680.1| UDP-N-acetylmuramate--alanine ligase [Chlamydophila psittaci 6BC]
 gi|313848352|emb|CBY17355.1| putative bifunctional cell division-related protein (includes:
           UDP-N-acetylmuramate--L-alanine ligase and
           D-alanine--D-alanine ligase [Chlamydophila psittaci RD1]
 gi|325507253|gb|ADZ18891.1| UDP-N-acetylmuramate--alanine ligase [Chlamydophila psittaci 6BC]
 gi|328814746|gb|EGF84736.1| UDP-N-acetylmuramate--alanine ligase [Chlamydophila psittaci Cal10]
 gi|328915037|gb|AEB55870.1| UDP-N-acetylmuramate--alanine ligase, putative [Chlamydophila
           psittaci 6BC]
          Length = 810

 Score =  239 bits (611), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 78/333 (23%), Positives = 136/333 (40%), Gaps = 43/333 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------------------- 40
           + V+ GG S E ++SL S +     L    + V    +DR                    
Sbjct: 454 VGVVCGGKSCEHDISLLSARNVVRYLSPEYYDVQYFIIDRQGLWSKVSTIECEDYEGKGH 513

Query: 41  ---SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSK 97
              S  +  A    D    +LHG FGEDG +Q  LE++  PY    +L S+++MDK+ +K
Sbjct: 514 YVLSSEITEALTHVDFILPILHGPFGEDGTLQGFLEIINKPYAGPSLLFSSVTMDKIMTK 573

Query: 98  QVVSSCGVPVCPSILVNRFTMDSQ---------HLISPPYVIKPLKGGSSLGIIVIKKDQ 148
           ++ +S GVPV P   +                    + P  +K    GSS+G+  +  ++
Sbjct: 574 RLAASVGVPVVPYQPLTLHAWKRTPELCMHKISEAFTFPMFVKTAHLGSSIGVFEVHNEE 633

Query: 149 SIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDAS----LDVTEIAVPKSDFYSYE 203
            +   +  S ++ +   + IE+   G  E+    +GD+S    +        +  F SYE
Sbjct: 634 ELKAKI--SEAFLYDTDIFIEESRLGSREIEVSCLGDSSSCYYISEPHERCGEKRFISYE 691

Query: 204 LKYSSL---NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260
            KY      ++       +  +    V+      ++ I  +G  R DF  D      +  
Sbjct: 692 EKYGLNGRASAQIQYDLDLSEESKIRVKEFTERVYRVIQGQGSCRVDFFLDDEGN-FWLS 750

Query: 261 EINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           E+N  PGMT  S F    A  G++F +++  ++
Sbjct: 751 EMNPIPGMTQASPFLHDFARLGWTFEQIIHQLI 783


>gi|293375437|ref|ZP_06621718.1| D-ala D-ala ligase N-terminal domain protein [Turicibacter
           sanguinis PC909]
 gi|292645990|gb|EFF64019.1| D-ala D-ala ligase N-terminal domain protein [Turicibacter
           sanguinis PC909]
          Length = 403

 Score =  239 bits (610), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 83/371 (22%), Positives = 143/371 (38%), Gaps = 81/371 (21%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDL------- 53
           + V  GG S E E+S+ S      A++   + V  + + +           D+       
Sbjct: 5   VGVFFGGESVEHEISIISANQAMHAIDKEKYDVVPVYLSKKREWYTGEALFDVKEYKNMD 64

Query: 54  --------------------------------------AFNVLHGNFGEDGLVQAILELL 75
                                                 A  V+HG  GEDG +Q   EL 
Sbjct: 65  ELFKKCQRITIVANKGKIQVERYPSKLFGNNILNTIDVAIPVIHGTNGEDGALQGFFELN 124

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISP 126
            IPY+   + A+A+  DK+  K ++   G+P+   +                  +  +S 
Sbjct: 125 GIPYSGCDVAAAAVGQDKVFMKNILRDSGLPITNYVWYYSSDWFANPEACLDAIESKLSY 184

Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGD- 184
           P ++KP   GSS+GI   K   S+   + ++ S  + ++ ++E+ V   +E+ C V+GD 
Sbjct: 185 PLMVKPASLGSSVGISKAKDRASLEEAITEAIS--YDNKFIVEEMVTQLVEVNCSVIGDF 242

Query: 185 --ASLDVTEIAVPKSDFYSYELKYSSL-----------------NSTHVLPAKIPLDIYK 225
             A   V E  +   +F SY+ KY                    ++  ++PA++  +  K
Sbjct: 243 SGAKASVLEEVMGSDEFLSYKDKYEGGGGSKGAKTGGTKSQGMASTNRIIPARLTDEGTK 302

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285
            VQ LA    + +G  G++R DFL +  +  V+  EIN  PG     +           F
Sbjct: 303 YVQDLALQTFRVLGSAGVARIDFLINAENNNVYVNEINTIPGSLSFYL----WEKTDRDF 358

Query: 286 RELLLWMVEDA 296
             L+  +VE A
Sbjct: 359 TGLMTSLVELA 369


>gi|325844429|ref|ZP_08168156.1| D-ala D-ala ligase N-terminal domain protein [Turicibacter sp.
           HGF1]
 gi|325489103|gb|EGC91487.1| D-ala D-ala ligase N-terminal domain protein [Turicibacter sp.
           HGF1]
          Length = 403

 Score =  238 bits (608), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 83/371 (22%), Positives = 144/371 (38%), Gaps = 81/371 (21%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDL------- 53
           + V  GG S E E+S+ S      A++   + V  + + +           D+       
Sbjct: 5   VGVFFGGESVEHEISIISANQAMHAIDKEKYDVVPVYLSKKREWYTGEALFDVKEYKNMD 64

Query: 54  --------------------------------------AFNVLHGNFGEDGLVQAILELL 75
                                                 A  V+HG  GEDG +Q   EL 
Sbjct: 65  ELFKKCQRITIVANKGKIQVERYPSKLFGNNILNTIDVAIPVIHGTNGEDGALQGFFELN 124

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISP 126
            IPY+   + A+A+  DK+  K ++   G+P+   +                  +  +S 
Sbjct: 125 GIPYSGCDVAAAAVGQDKVFMKNILRDSGLPITNYVWYYSSDWFANPEACLDAIESKLSY 184

Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGD- 184
           P ++KP+  GSS+GI   K   S+   + ++ S  + ++ ++E+ V   +E+ C V+GD 
Sbjct: 185 PLMVKPVSLGSSVGISKAKDRASLEEAITEAIS--YDNKFIVEEMVTQLVEVNCSVIGDF 242

Query: 185 --ASLDVTEIAVPKSDFYSYELKYSSL-----------------NSTHVLPAKIPLDIYK 225
             A   V E  +   +F SY+ KY                    ++  ++PA++  +  K
Sbjct: 243 SGAKASVLEEVMGSDEFLSYKDKYEGGGGSKGAKTGGTKSQGMASTNRIIPARLTDEGTK 302

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285
            VQ LA    + +G  G++R DFL +  +  V+  EIN  PG     +           F
Sbjct: 303 YVQDLALQTFRVLGSAGVARIDFLINAENNNVYVNEINTIPGSLSFYL----WEKTDRDF 358

Query: 286 RELLLWMVEDA 296
             L+  +VE A
Sbjct: 359 TGLMTSLVELA 369


>gi|119775038|ref|YP_927778.1| D-alanyl-alanine synthetase A [Shewanella amazonensis SB2B]
 gi|189083048|sp|A1S6V2|DDL_SHEAM RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|119767538|gb|ABM00109.1| D-alanine--D-alanine ligase [Shewanella amazonensis SB2B]
          Length = 336

 Score =  238 bits (607), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 79/328 (24%), Positives = 139/328 (42%), Gaps = 39/328 (11%)

Query: 1   MAVLMGGISSEREVSLSSGK---ACASALED-----------------AGFKVSQIDVDR 40
           + +L GG  SE ++SL S K   +C + L                    G ++ ++   R
Sbjct: 6   LVLLCGGGGSEHDISLLSAKYFESCLATLPRFNTLWLELTAEGQFRTREG-EIVELTNRR 64

Query: 41  SVGLVLAHLKP---DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSK 97
            +        P   D     +HG  GE G +Q+   L+ +PY   G  AS+   +K+ +K
Sbjct: 65  EIRFADEAKAPWSVDYVIPCIHGYPGETGDIQSWFNLIRLPYFGCGSEASSNCFNKITAK 124

Query: 98  QVVSSCGVPVCPSILVNRFTMDSQHLISPP------YVIKPLKGGSSLGIIVIKKDQSIP 151
              S+ G+P  P + ++  + D+   +           IK    GSS+G     + + IP
Sbjct: 125 MWFSALGIPNTPYLYLDEPSNDAIARVEAAFDEWGSVFIKAASQGSSVGCFPAHRREDIP 184

Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYS 207
              L   ++ +   +++E+ +   EL   V        +    EI    + FYS+E KY 
Sbjct: 185 G--LVRKAFEYAPFVVVEKTIKARELEVAVYDYQGEIVATRPGEIVCAANTFYSFEEKYD 242

Query: 208 SLN--STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           + +   THV    +  +    ++  A  A + +  R +SR DF       ++   EIN  
Sbjct: 243 TKSQAVTHVEAPDVDEETVAAIRDYALRAFKGMKLRHLSRIDFFLTE-DNQILLNEINTF 301

Query: 266 PGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           PG+T +S+FP+M A+ G+ F   L   +
Sbjct: 302 PGLTQISMFPKMLAHHGHDFATFLEQAI 329


>gi|89897960|ref|YP_515070.1| MurC/ddl bifunctional enzyme [Chlamydophila felis Fe/C-56]
 gi|89331332|dbj|BAE80925.1| MurC/ddl bifunctional enzyme [Chlamydophila felis Fe/C-56]
          Length = 811

 Score =  238 bits (607), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 84/334 (25%), Positives = 136/334 (40%), Gaps = 44/334 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI------------------DVDRSV 42
           + V+ GG S E +VSL S K     L    + V                     D D+  
Sbjct: 454 VGVVCGGQSCEHKVSLLSAKNIIQYLASEYYDVQYFVINRQGLWSKVTAIDAEHDYDKEG 513

Query: 43  GLVLAHL------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRS 96
             VL+          D+   +LHG FGEDG +Q  LE+++ PY    +L SA+SMDK+ +
Sbjct: 514 YHVLSSEIAESLANVDVILPILHGPFGEDGTLQGFLEIIDKPYGGPSLLFSAISMDKVMT 573

Query: 97  KQVVSSCGVPVCPSILVNRFTMDSQ---------HLISPPYVIKPLKGGSSLGIIVIKKD 147
           K++ +S GVPV P   +                    + P  +K    GSS+G+  +  +
Sbjct: 574 KRLAASIGVPVVPYQPLTLHAWKRTPDLCMRRILETFTFPMFVKAAHLGSSIGVFEVHNE 633

Query: 148 QSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDV----TEIAVPKSDFYSY 202
           + +   +  S ++     + IE+   G  E+    +GDAS             +  F SY
Sbjct: 634 EELKSKI--SEAFQCDTDIFIEESRLGSREIEVSCLGDASSSYYISEPHERCGEKRFISY 691

Query: 203 ELKYSSL---NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
           E KY      ++          +    V+ L    ++ I  +G  R DF  D    + + 
Sbjct: 692 EEKYGFNGKSSAKIQYDLNFSKEAKARVKELTERIYRVIQGKGSCRIDFFLDN-EGEFWL 750

Query: 260 LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            EIN  PGMT  S F       G++F +++  ++
Sbjct: 751 SEINPIPGMTESSPFLHDFVRVGWTFEQIMHQLI 784


>gi|91793706|ref|YP_563357.1| D-alanyl-alanine synthetase A [Shewanella denitrificans OS217]
 gi|122968653|sp|Q12LP2|DDL_SHEDO RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|91715708|gb|ABE55634.1| D-alanine--D-alanine ligase [Shewanella denitrificans OS217]
          Length = 335

 Score =  237 bits (606), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 77/325 (23%), Positives = 140/325 (43%), Gaps = 37/325 (11%)

Query: 3   VLMGGISSEREVSLSSGKACASAL-EDAGFKVSQIDVD---------------------R 40
           +L GG  +E ++SL S +   ++L +   F V  + +D                     R
Sbjct: 8   LLCGGGGAEHDISLMSARFFETSLAKSDQFSVLTLTLDKQGRYHTQDGNLCSLTNRREIR 67

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
                +A    D     +HG  GE G +Q+   L+++PY      AS+   +K+ +K   
Sbjct: 68  FEDPSIAPWAVDYVIPCIHGFPGETGDIQSYFNLIQLPYFGCESEASSNCFNKITAKMWF 127

Query: 101 SSCGVPVCPSILVNRFTMDSQHLISPP------YVIKPLKGGSSLGIIVIKKDQSIPLDL 154
           S+ GVP  P I +++F  ++               IK    GSS+G   +    +I    
Sbjct: 128 SALGVPNTPYIFLHQFDQEAIAQTQAAFDTWGSVFIKAASQGSSVGCYKVDVRDNI--AK 185

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLN 210
           +   ++ +   +++E+ +   EL   V        +    EI    + FYS++ KY+  +
Sbjct: 186 VLEEAFGYAPYVVVEKTIKARELEVAVYEYQGDIIATLPGEIICDTNKFYSFDEKYAKDS 245

Query: 211 --STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268
              T V+ + +   +  ++Q  A  A + +  R +SR DF       ++   EIN  PG+
Sbjct: 246 KARTDVVASNLSPKLCLQIQDYAIKAFKGMKLRHLSRIDFFLT-QDDEILLNEINTFPGL 304

Query: 269 TPVSIFPEMAAYAGYSFRELLLWMV 293
           TP+S+FP+M    G+ F E L  ++
Sbjct: 305 TPISMFPKMLQNHGHDFTEYLSDVI 329


>gi|119717708|ref|YP_924673.1| D-alanine--D-alanine ligase [Nocardioides sp. JS614]
 gi|119538369|gb|ABL82986.1| D-alanine--D-alanine ligase [Nocardioides sp. JS614]
          Length = 311

 Score =  237 bits (606), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 90/308 (29%), Positives = 145/308 (47%), Gaps = 21/308 (6%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           +AV+ GG S E +VSL+S  A A+ L+   + V ++ + R                    
Sbjct: 5   VAVVGGGRSCEHDVSLASAAAVAAGLDPHRYDVVRLTIGRDGAWRDGDRPVGLAAAVEVL 64

Query: 50  -KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
            + D+ F V HG  GEDG + A+ EL  +PY  SG+ A AL+MDK  +K V ++ G+   
Sbjct: 65  RRCDVVFPVAHGPHGEDGTLAALCELAGVPYVGSGVRAGALAMDKWATKLVAAALGIATA 124

Query: 109 PSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168
              LV   T   +     P V+KP+  GSS+G+  + +  S+P  L  + +    D+ L+
Sbjct: 125 AGRLVTAATATQETWTG-PVVVKPVAAGSSIGVAFVSEPASLPPALATALAL--DDRALV 181

Query: 169 EQYVDGIELTCGVM---GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
           E+ V G E+   V+     A +    + +     + ++ KY    +   +PA +     K
Sbjct: 182 EELVTGREIDVAVLRRADGAVVASPPLEIVADGLFDFDAKYG-GRADFRVPAVLDEVDAK 240

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285
            ++  A   + A+GC G++R DF            E+N  PGMT  S  P M A AG  +
Sbjct: 241 ALEGAAVATYDALGCSGVARVDFFLTDTG--PVLNEVNTVPGMTEHSQVPRMFAAAGLPY 298

Query: 286 RELLLWMV 293
            +LL  +V
Sbjct: 299 PDLLDELV 306


>gi|325971616|ref|YP_004247807.1| D-alanine--D-alanine ligase [Spirochaeta sp. Buddy]
 gi|324026854|gb|ADY13613.1| D-alanine--D-alanine ligase [Spirochaeta sp. Buddy]
          Length = 360

 Score =  236 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 83/343 (24%), Positives = 143/343 (41%), Gaps = 49/343 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           +A++ GG S+E EVS++S      AL+ AG++V  I +       L              
Sbjct: 3   IALVYGGRSTEHEVSIASALTVHRALKQAGYRVLLIAIALDGRWYLQPNLLSKSIDATIP 62

Query: 47  -------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDK 93
                        A L  D  F   HG  GEDG +Q +  L  +P      ++SAL M K
Sbjct: 63  IHAVPGLGLYVQDAKLDIDAVFATTHGYGGEDGNLQGLCMLCRLPLCGCDTVSSALGMHK 122

Query: 94  MRSKQVVSSCGVPVCPSILVNRFTMD----------SQHLISPPYVIKPLKGGSSLGIIV 143
             + ++     +P  P++L+++  +           ++  + P   +KP   GSS+G+  
Sbjct: 123 HLASELFMQALIPTVPTLLLDKNAVQQVEYTTLLERARSTLGPDLFVKPENSGSSVGVSA 182

Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDA------SLDVTEIAVPK 196
           +K   +  L      +  + +++LI+  +    EL   V+         +     I   K
Sbjct: 183 LKDCDAKALQQAVELARRYSERVLIQLLIHPLQELETAVLETRDKGLVVAGPGLVIDPAK 242

Query: 197 S--DFYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
               F SYE KY  +++ H+  P+ +       ++  A  A  AI   G +R DF     
Sbjct: 243 ETVGFLSYEHKYGKVDTAHIRIPSGLDDTTETIIKNYARKAFLAIKGDGYARIDFFVSE- 301

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             +++  EIN  PG+T  S +P + A  GY    +   +VE+A
Sbjct: 302 -NRIYLNEINTSPGLTDTSHYPALLASVGYDLSSVCKHLVENA 343


>gi|268610478|ref|ZP_06144205.1| D-alanine-D-alanine ligase and related ATP-grasp enzyme
           [Ruminococcus flavefaciens FD-1]
          Length = 401

 Score =  236 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 88/371 (23%), Positives = 150/371 (40%), Gaps = 81/371 (21%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-----------------SVG 43
           +AVL GG S E EVS+ S     +++    + +  + + +                  + 
Sbjct: 5   LAVLFGGRSVEHEVSVISAVQAMASINKEKYNIIPVYMTKKSEFYTSEKMLDINSFKDIP 64

Query: 44  LVLAHL----------------------------KPDLAFNVLHGNFGEDGLVQAILELL 75
            +LA                                D+AF ++HG   EDG +Q  L+ L
Sbjct: 65  ALLAESTECVFVRSEGKVQLVRQKIKKFGSNLISDVDIAFPIVHGTNVEDGALQGYLQTL 124

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--------QHLISPP 127
           ++PY    +LASA+ MDK   K ++   G PV      + + +D         +     P
Sbjct: 125 DLPYVGCDVLASAVGMDKYVMKILLKEAGFPVLDCCRFSSYEIDDMDNMIAQVEAKFGYP 184

Query: 128 YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVMGD-A 185
            ++KP+  GSS+GI   K   S+        ++   D++L+E   V   E+ C V+GD  
Sbjct: 185 VIVKPINLGSSVGISKAKDRDSLI--NSIEEAFQFADRILVEPAVVQLKEINCSVVGDSE 242

Query: 186 SLDVTEIAVP----KSDFYSYELKYSSLNS----------------THVLPAKIPLDIYK 225
             + +    P      +  SY+ KY                        +PA+I  +  +
Sbjct: 243 EAEASVCEEPVQASSDEILSYDQKYKGDGGKNGSKSGGGSKGMATLKRKIPAEITPEQDE 302

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285
            ++R A  A + +GC G++R DF+ D  + KV+  EIN  PG    S+   +    G  +
Sbjct: 303 FIRRTAVDAFRYLGCNGVTRIDFMIDMATDKVYINEINTIPG----SLAFYLWEPKGVKY 358

Query: 286 RELLLWMVEDA 296
            ELL  +++ A
Sbjct: 359 PELLERLIQLA 369


>gi|62185432|ref|YP_220217.1| putative bifunctional cell division-related protein (includes:
           UDP-N-acetylmuramate--L-alanine ligase and
           D-alanine--D-alanine ligase [Chlamydophila abortus
           S26/3]
 gi|62148499|emb|CAH64270.1| putative bifunctional cell division-related protein (includes:
           UDP-N-acetylmuramate--L-alanine ligase and
           D-alanine--D-alanine ligase [Chlamydophila abortus
           S26/3]
          Length = 810

 Score =  236 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 77/333 (23%), Positives = 138/333 (41%), Gaps = 43/333 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------------------- 40
           + V+ GG S E ++S+ S K     L    + +    +DR                    
Sbjct: 454 VGVVCGGKSCEHDISVLSAKNVVRYLSPEYYDIQYFIIDRQGLWSKVSTIECEDYEGKGY 513

Query: 41  ---SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSK 97
              S  +  A +  D    +LHG FGEDG +Q  LE++  PY    +L S+++MDK+ +K
Sbjct: 514 HVLSSEITEALIHLDFILPILHGPFGEDGTLQGFLEIINQPYAGPSLLFSSVTMDKIMTK 573

Query: 98  QVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSLGIIVIKKDQ 148
           ++ +S GVPV P   +                    + P  +K    GSS+G+  +  ++
Sbjct: 574 RLAASVGVPVVPYQPLTLHAWKRTPELCMHKIAEAFTFPMFVKTAHLGSSIGVFEVHNEE 633

Query: 149 SIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDAS----LDVTEIAVPKSDFYSYE 203
            +   +  S ++ +   + IE+   G  E+    +GD+S    +        +  F SYE
Sbjct: 634 ELKAKI--SEAFLYDTDIFIEESRLGSREIEVSCLGDSSSCYYISEPHERCGEKRFISYE 691

Query: 204 LKYSSL---NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260
            KY      ++       +  ++   V+ L    ++ I  +G  R DF  D      +  
Sbjct: 692 DKYGLNGRTSAQIQYDLDLSEELKIRVKELTERMYRVIQGQGSCRVDFFLDDEGN-FWLS 750

Query: 261 EINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           E+N  PGMT  S F       G++F +++  ++
Sbjct: 751 EMNPIPGMTKASPFLHDFVRLGWTFEQVIHQLI 783


>gi|160903079|ref|YP_001568660.1| D-alanine--D-alanine ligase [Petrotoga mobilis SJ95]
 gi|190359202|sp|A9BI46|DDL_PETMO RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|160360723|gb|ABX32337.1| D-alanine--D-alanine ligase [Petrotoga mobilis SJ95]
          Length = 298

 Score =  236 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 85/300 (28%), Positives = 151/300 (50%), Gaps = 16/300 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-VDRSVGLVLAHLKPDLAFNVLH 59
           + ++ GG S ERE+SL+S K   +++ + G+K   +D +D      + + K   AFNV+H
Sbjct: 3   IPIITGGKSKEREISLTSAKNVFNSISNLGYKPVILDLIDDDFINKIQNYK--FAFNVVH 60

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G++GEDG + ++LE+L I YT S       + DK     +  +  + +  + L N+  + 
Sbjct: 61  GDYGEDGRLPSLLEILGIDYTCSNPETCIATYDKFIFYSLFKNY-IQMPQTTLTNKLIL- 118

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
                  P++IKP K GSS G+ +I  +      L +        ++L+++Y+ G E+T 
Sbjct: 119 --PPFEYPFIIKPRKSGSSKGVYIIHNENEYKFYLEKDL--KEFQEVLVQEYIKGREITI 174

Query: 180 GVMGDAS----LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
             +        L + EI +PK +FY YE KY++  +        P  I +++  +     
Sbjct: 175 SYIQKNEEFILLPILEI-IPKKEFYDYEAKYTNGLTELKPQLNSPEKIIQKINEIGNHVM 233

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           Q +  + + R D +      +V+ LEIN  PG+T +S  P  A  AG SF EL+  ++++
Sbjct: 234 QTLTFKDMFRIDAIL--KDDEVYVLEINTVPGLTELSDLPTSALAAGISFDELINIIIKN 291


>gi|158318443|ref|YP_001510951.1| D-alanine--D-alanine ligase [Frankia sp. EAN1pec]
 gi|158113848|gb|ABW16045.1| D-alanine--D-alanine ligase [Frankia sp. EAN1pec]
          Length = 321

 Score =  236 bits (602), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 100/312 (32%), Positives = 150/312 (48%), Gaps = 19/312 (6%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62
           +L GG+S EREVSL SG     AL   G +    DVD +    LA   PD+ F VLHG  
Sbjct: 9   ILAGGLSPEREVSLHSGGKLRDALTRIGVEAELADVDAATLPALAADPPDVVFPVLHGTS 68

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ- 121
           GEDG ++ +L+L  +PY  +   A  ++ DK  +K  V + GV    ++ + R       
Sbjct: 69  GEDGTIREVLDLYGLPYVGALPPACRVAFDKATAKAAVGAAGVATPEAVTLPREAFHDLG 128

Query: 122 ---------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                      +  P V+KP  GGS+ G+  +  D +  L     S + + D  LIEQ V
Sbjct: 129 AAALIERIVARLGLPVVVKPRAGGSAFGVTHV--DDAGGLAEALMSCFGYHDSALIEQAV 186

Query: 173 DGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
            G+E+  GV+    G  +L   EI  P++  Y Y  +Y++  ++   PA++  D+     
Sbjct: 187 AGVEIAIGVVDSGDGPVALPAVEIE-PRAGVYDYAARYTAGATSFFTPARLHKDVLWAAA 245

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
             A  AH+ +G R +SR+D + D       +LE+NV PGMT  S +P     AG  F  +
Sbjct: 246 ETALTAHRVLGLRDLSRTDMIVD-RDGVAQFLEVNVAPGMTDTSTWPMGLHAAGLDFAVV 304

Query: 289 LLWMVEDASCLR 300
              +   A C R
Sbjct: 305 CRDLAAHA-CDR 315


>gi|327485602|gb|AEA80008.1| D-alanine--D-alanine ligase [Vibrio cholerae LMA3894-4]
          Length = 305

 Score =  235 bits (601), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 85/320 (26%), Positives = 137/320 (42%), Gaps = 55/320 (17%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDVDR------------------S 41
           + +L GG SSE E+SL S       LE    F V ++++ +                  +
Sbjct: 6   ILLLCGGGSSEHEISLVSANYIQQQLELTPEFHVIRVEMKKEGWFSEQGALVYLDTNSAT 65

Query: 42  VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +    A    D     +HG  GE G +Q++LEL  IPY   G  ASA S +K+ SK    
Sbjct: 66  LNSDKASYPIDFVVPCIHGFPGETGDIQSMLELAGIPYLGCGPEASANSFNKITSKLWYD 125

Query: 102 SCGVPVCPSILVNRFTMDSQHLISPPY------VIKPLKGGSSLGIIVIKKDQSIPLDLL 155
           + G+P  P + + + T  S       +       +K  + GSS+G   +  +        
Sbjct: 126 ALGIPNTPYLFLTQNTPSSIEKAKQAFGHWGSIFVKAARQGSSVGCYKVTTE-------- 177

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLN-STHV 214
             S++    +L I +                    E+  P+  FYSYE KYS+ + +  V
Sbjct: 178 -VSAYEMNGKLYISK------------------PGEVIAPEGTFYSYEEKYSANSHARTV 218

Query: 215 LPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273
           L A+ +     + +Q  A      +  R +SR DF       +++  E+N  PGMTP+S+
Sbjct: 219 LEAENLTEKHKELIQTYAERVFIHMKLRHLSRIDFFLT-QEGQIYLNEVNTFPGMTPISM 277

Query: 274 FPEMAAYAGYSFRELLLWMV 293
           FP+M  + G+ F E L+  V
Sbjct: 278 FPKMLEHNGHRFSEFLVQCV 297


>gi|269104486|ref|ZP_06157182.1| D-alanine--D-alanine ligase [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|268161126|gb|EEZ39623.1| D-alanine--D-alanine ligase [Photobacterium damselae subsp.
           damselae CIP 102761]
          Length = 287

 Score =  235 bits (601), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 70/275 (25%), Positives = 128/275 (46%), Gaps = 15/275 (5%)

Query: 35  QIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKM 94
           Q+++DR++         +     +HG  GE G +Q+ L++  +PY   G  AS    +K+
Sbjct: 15  QLNLDRTLQTGDTKQIINYVIPCVHGFPGETGDLQSFLDMAGLPYLGCGAEASRNCFNKI 74

Query: 95  RSKQVVSSCGVPVCPSILVNRFTMDSQHLISP------PYVIKPLKGGSSLGIIVIKKDQ 148
            +K    +  +P  P + ++    D+    S          +K    GSS+G   +    
Sbjct: 75  TTKLWFDALDIPNTPYVFLSENNEDAHTKASEAFDKWGKVFVKAASQGSSVGCYSVTDKA 134

Query: 149 SIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--MGDASL--DVTEIAVPKSDFYSYEL 204
           ++    + + ++ + DQ+LIE+ +   EL       GD  +     E++ P   FYSYE 
Sbjct: 135 NL--AAVVNDAFGYSDQVLIEKSIKPRELEIAAYQYGDELIITKPGEVSCPDDKFYSYEE 192

Query: 205 KYSSL--NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
           KYSS   ++T V    +  +  + ++  A  A   +  + +SR DF       ++   EI
Sbjct: 193 KYSSDSHSTTAVEATNLSEEQVEALRECARKAFVHMKLKDLSRIDFFLSE-DNEILLNEI 251

Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           N  PGMTP+S+FP+M    G+SF + +   ++ A+
Sbjct: 252 NTFPGMTPISMFPKMLENHGHSFTKFIEQAIKSAA 286


>gi|28493472|ref|NP_787633.1| D-alanine--D-alanine ligase [Tropheryma whipplei str. Twist]
 gi|39930872|sp|Q83G28|DDL_TROWT RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|28476514|gb|AAO44602.1| D-alanine--D-alanine ligase [Tropheryma whipplei str. Twist]
          Length = 347

 Score =  235 bits (601), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 91/348 (26%), Positives = 145/348 (41%), Gaps = 62/348 (17%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------------SVGLVLAH- 48
           +L GG S E  VS +S +A    + D  + V  + + +               G V+ + 
Sbjct: 6   LLFGGRSQEHSVSYASARALLEHICDE-WTVIPVGITKHGDFVYCSTVSEQDYGEVIDNG 64

Query: 49  -------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                    ++ DL F +LHG FGEDG +Q +L+LL+IPY  SG
Sbjct: 65  NRVVWPSRAGCKKIEVVQARGKSFFVEFDLVFPLLHGVFGEDGTIQGMLDLLDIPYVGSG 124

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ---------HLISPPYVIKPLK 134
           + ASA +MDK  +K + S  G+PV P  L+                    + P  +KP+ 
Sbjct: 125 VFASAAAMDKHYTKILCSHAGIPVLPWYLIKGHAWHKNRDSFLKQISDRFTFPLFVKPVD 184

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM-GDASLDVTEIA 193
            GSS G   +   + +P  +    +  HG   ++E  +D  E+ C ++  +  L  +E+ 
Sbjct: 185 AGSSFGCTFVDFFEQLP--VAIEHALQHGKSAIVEPALDAPEVFCSLIENNGVLQCSELV 242

Query: 194 VPK---SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
             K   S FY Y  KY +     V+PA+           +A      +GCR  +R DF  
Sbjct: 243 FVKHSGSKFYDYSAKYLNP-VEFVIPAQFDN--TDGYAEIASKVFFELGCRHYARIDFFV 299

Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
                 +   EIN  PG+T  SIFP         + +++  ++  A C
Sbjct: 300 TESG--LVLNEINTSPGLTQKSIFPSSFKS--MQYSQVIETILASAYC 343


>gi|28572416|ref|NP_789196.1| D-alanine--D-alanine ligase A [Tropheryma whipplei TW08/27]
 gi|39930876|sp|Q83I36|DDL_TROW8 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|28410547|emb|CAD66933.1| D-alanine--D-alanine ligase A [Tropheryma whipplei TW08/27]
          Length = 347

 Score =  235 bits (601), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 91/348 (26%), Positives = 145/348 (41%), Gaps = 62/348 (17%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------------SVGLVLAH- 48
           +L GG S E  VS +S +A    + D  + V  + + +               G V+ + 
Sbjct: 6   LLFGGRSQEHSVSYASARALLEHICDE-WTVIPVGITKHGDFVYCSTVSEQDYGEVIDNG 64

Query: 49  -------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                    ++ DL F +LHG FGEDG +Q +L+LL+IPY  SG
Sbjct: 65  NRVVWPSRAGCKKIEVVQARGKSFFVEFDLVFPLLHGVFGEDGTIQGMLDLLDIPYVGSG 124

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ---------HLISPPYVIKPLK 134
           + ASA +MDK  +K + S  G+PV P  L+                    + P  +KP+ 
Sbjct: 125 VFASAAAMDKHYTKILCSHAGIPVLPWYLIKGHAWHKNRDSFLKQISDRFTFPLFVKPVD 184

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM-GDASLDVTEIA 193
            GSS G   +   + +P  +    +  HG   ++E  +D  E+ C ++  +  L  +E+ 
Sbjct: 185 AGSSFGCTFVDFFEQLP--VAIEHALQHGKSAIVEPALDAPEVFCSLIENNGVLQCSELV 242

Query: 194 VPK---SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
             K   S FY Y  KY +     V+PA+           +A      +GCR  +R DF  
Sbjct: 243 FVKHSGSKFYDYSAKYLNP-VEFVIPAQFDN--TDGYAEIASKVFFELGCRHYARIDFFV 299

Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
                 +   EIN  PG+T  SIFP         + +++  ++  A C
Sbjct: 300 TESG--LVLNEINTSPGLTQKSIFPSSFKS--MQYSQVIETILASAYC 343


>gi|326330648|ref|ZP_08196952.1| D-alanine--D-alanine ligase [Nocardioidaceae bacterium Broad-1]
 gi|325951489|gb|EGD43525.1| D-alanine--D-alanine ligase [Nocardioidaceae bacterium Broad-1]
          Length = 318

 Score =  235 bits (601), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 93/313 (29%), Positives = 159/313 (50%), Gaps = 18/313 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AV+ GG+S ER+VSL+SG+     L   G +V+  D DR++   L   K  +A   LHG
Sbjct: 10  VAVIAGGLSHERDVSLASGRNLVRELSALGVEVAAYDFDRALLHNLERDKAVVALPALHG 69

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG +Q +LEL+ IPY  +   +  ++ DK  +++++   G+PV  S+ ++  T   
Sbjct: 70  QFGEDGEIQTLLELIGIPYVGTVSTSCRVAFDKAAARELLRRGGIPVPDSVSLSSTTFRD 129

Query: 121 ----------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                        +    V+KP +GGS+LG+  +    ++P  L+++  + + D+ LIE+
Sbjct: 130 VGAPVLMEHVISRMGERVVVKPSRGGSALGVTGVDGLSALPAALVKT--YAYCDEALIER 187

Query: 171 YVDGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE 226
           +  GI+++  V     G   L    I   K   + +  +Y++       P  +P  +  E
Sbjct: 188 FYAGIDVSVVVHETDEGTKPLTPIAIDFSKGHEFDFAARYTAEFVGFGRP-DLPDALLTE 246

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           +   A  AH+ +G R ISR+DF+  P       LE+ + PG T  S+FP  A + G S  
Sbjct: 247 LGETAVRAHELLGMRDISRTDFMVTP-DGGFVVLEVAITPGATETSVFPFAAKHDGTSMG 305

Query: 287 ELLLWMVEDASCL 299
           E+ L +++ A   
Sbjct: 306 EVTLALLKRALAR 318


>gi|212635560|ref|YP_002312085.1| D-alanyl-alanine synthetase A [Shewanella piezotolerans WP3]
 gi|226729272|sp|B8CMV8|DDL_SHEPW RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|212557044|gb|ACJ29498.1| D-alanine--D-alanine ligase [Shewanella piezotolerans WP3]
          Length = 332

 Score =  235 bits (600), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 80/326 (24%), Positives = 144/326 (44%), Gaps = 37/326 (11%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDA-GFKVSQIDVD-------------------- 39
           + +L GG   E  +SL S     ++L     F V ++++D                    
Sbjct: 6   ILLLCGGGGDEHAISLLSANYFETSLATLPQFNVLRVELDVNGHYRTAAGESCELNSRRQ 65

Query: 40  -RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQ 98
            R      A  + D A   +HG  GE G +Q+  EL+ +PY      AS    +K+ +K 
Sbjct: 66  IRFDADNRAPWEVDFAIPCIHGFPGETGDIQSYFELINLPYFGCKAEASRNCFNKITAKM 125

Query: 99  VVSSCGVPVCPSILVNRFTMDSQHLISPPY------VIKPLKGGSSLGIIVIKKDQSIPL 152
             S+  +P  P + +N  +  S    +          +K    GSS+G   I   + +  
Sbjct: 126 WFSALNIPNTPYLFLNEMSDVSIEQATNALVNWGSIFVKAASQGSSVGCYRIDNQEDVAS 185

Query: 153 DLLQSSSWNHGDQLLIEQYVDGIELTCGVMG-DASLDVT---EIAVPKSDFYSYELKYSS 208
            L Q  ++ + D +++E+ +   EL   V   D  +  T   E+    ++FY+++ KY++
Sbjct: 186 TLAQ--AFTYSDYVIVEKTISARELEVAVYEIDGEIVATVPGEVICSSNNFYTFDEKYAA 243

Query: 209 LN-STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPG 267
            + +   + A I  ++   +++ A  A + +  R +SR DF       +V   EIN  PG
Sbjct: 244 NSKAQTQVVADISKEVSDLIRQYAISAFKGMKLRHLSRIDFFLT-DDGEVLLNEINTFPG 302

Query: 268 MTPVSIFPEMAAYAGYSFRE-LLLWM 292
           +TP+S+FP+M    G+SF + LL  +
Sbjct: 303 LTPISMFPKMLQNHGHSFPDYLLSNI 328


>gi|293401980|ref|ZP_06646120.1| D-alanine--D-alanine ligase [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gi|291304638|gb|EFE45887.1| D-alanine--D-alanine ligase [Erysipelotrichaceae bacterium
           5_2_54FAA]
          Length = 386

 Score =  235 bits (600), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 82/354 (23%), Positives = 147/354 (41%), Gaps = 67/354 (18%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS------------------- 41
           +A+  GG+S E E+S+ S     +A  DA +++  + + +                    
Sbjct: 8   VAIAFGGVSVEHEISILSAMQAIAAFPDA-YEIVPLYIAKDGRMYSDASFQKTEVFQDLT 66

Query: 42  --------VGLVLAHLK----------------PDLAFNVLHGNFGEDGLVQAILELLEI 77
                   V LV  H +                 D    +LHG  GEDG  Q  L+ L +
Sbjct: 67  KVTQEKYEVQLVREHQRVLMQWKKHHFWKTSRVIDFVLPILHGTNGEDGSFQGFLKTLHV 126

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIK 131
           P+   G+L+ AL  DK+  K ++   G+P+ P         +          +  P +IK
Sbjct: 127 PFAQCGVLSGALGQDKVAMKMILQDRGLPLVPWFYWWKQEPLEEAFFAKAQRLGYPMIIK 186

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMG---DASL 187
           P   GSS+GI V++  Q +   +     + + D+++IE+ +    E+   V+G   DA  
Sbjct: 187 PSNLGSSIGIAVVQNAQELKKAM--EEGFQYDDKIVIEKMITPLREINASVLGNMEDAKC 244

Query: 188 DVTEIAVPKSDFYSYELKY-------SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
            V E  V +    S++ KY           +   +PA +  +  +E+   A  + QA+  
Sbjct: 245 SVLEEVVKQDTILSFQDKYEGHAKSKGMAGTNRRVPASLEKEEAQEITSYALASFQALQA 304

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            G+ R DFL +  ++ ++  EIN  PG     +       +G +F +LL  +++
Sbjct: 305 EGVVRIDFLMNADTKDIYVNEINSIPGSLAYYL----WEASGLTFTKLLEELIQ 354


>gi|326693128|ref|ZP_08230133.1| D-alanyl-alanine synthetase A [Leuconostoc argentinum KCTC 3773]
          Length = 377

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 87/346 (25%), Positives = 149/346 (43%), Gaps = 56/346 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAG-FKVSQI----------------------- 36
           +A+L GG SSE +VS  S +    A+E +G + ++                         
Sbjct: 6   VALLFGGNSSEHDVSKRSAQNYYQAIEASGKYDITVFAIAQNGYFLDPESSKRVLALEDE 65

Query: 37  --------------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
                         D    +  +      D+ F V+HGN GEDG +Q +  LL  P+  +
Sbjct: 66  QPIVDAFMAKVDTTDPLARISALREAGDFDIFFPVVHGNLGEDGTLQGLFRLLNKPFVGA 125

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNR-----FTMDS-QHLISPPYVIKPLKGG 136
            +   A+S DK  +K++++   +     ++++      +T D           +K    G
Sbjct: 126 PLRGHAVSFDKAMTKELLTVNNIRNTNYVVLDEKTAKDWTWDKVVATFGDVVFVKAANQG 185

Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIA-- 193
           SS+GI      +     L  S  +++  ++L+EQ V G  EL  GV+G+    V+EI   
Sbjct: 186 SSVGISRATTAEEFAAALADSFQYDY--KVLVEQAVKGPRELEVGVIGNDEPLVSEIGAH 243

Query: 194 -VPK----SDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
            VP       +Y Y  K+   ++    +PAK+P  I +EV+ +A  A++ +  RG +R D
Sbjct: 244 AVPNQGDGDGWYDYNNKFVDNSAVEFEIPAKLPDAITQEVKDMALKAYKVLNLRGEARMD 303

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           FL D      +  E N  PG T +S+F  +  Y+      L+  M+
Sbjct: 304 FLLDEND-VPYLGEPNTLPGFTNMSLFKRLWDYSDIDNVALVEKMI 348


>gi|67479916|gb|AAY67966.1| truncated D-alanine:D-alanine ligase 2 [Enterococcus gallinarum]
          Length = 305

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 83/309 (26%), Positives = 139/309 (44%), Gaps = 53/309 (17%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID----------------------- 37
           + VL GG+S ER+VSLSSG   A ALE+ G +   +D                       
Sbjct: 3   IVVLAGGLSHERDVSLSSGGQIAMALEERGHRALLLDLYQGNNEKTFEAAYSIQKQEENP 62

Query: 38  ----VDRSVGLVLAHLK-------------------PDLAFNVLHGNFGEDGLVQAILEL 74
               VD +   +   ++                    D  F  LHG  GE+G +QA  +L
Sbjct: 63  YDYFVDENEPDIEKLIQKNSSQKNVMGKNVVELCRDADFCFIALHGGIGENGKLQAFFDL 122

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLK 134
             I Y+ S    S L+MDK  +KQ++    +P     +   +    +   S P V+KP+ 
Sbjct: 123 YGIRYSGSHYKGSLLAMDKDIAKQLMKLNDIPTPKWQI---WEQGQEVYYSSPCVVKPID 179

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194
            GSS+G+ +++  +     L ++    +  +++IEQ ++G E + GV+GD  L   EI +
Sbjct: 180 NGSSIGVEIVENKEQFSKALKKAE--KYNSKVMIEQKIEGREFSVGVLGDNVLPAIEI-I 236

Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
           P+  FY+YE KY    +  + PA I  D+   +  +  L ++ +G    SR D++     
Sbjct: 237 PQQGFYNYENKYQKGATEEITPADISSDLATRLSEMTVLVNKVLGLSIYSRVDYIVTK-E 295

Query: 255 RKVFWLEIN 263
             ++ +E N
Sbjct: 296 LDIYCIEAN 304


>gi|83815518|ref|YP_446302.1| D-alanine--D-alanine ligase [Salinibacter ruber DSM 13855]
 gi|294508238|ref|YP_003572296.1| D-alanine--D-alanine ligase A [Salinibacter ruber M8]
 gi|83756912|gb|ABC45025.1| D-alanine--D-alanine ligase [Salinibacter ruber DSM 13855]
 gi|294344566|emb|CBH25344.1| D-alanine--D-alanine ligase A [Salinibacter ruber M8]
          Length = 434

 Score =  233 bits (595), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 88/384 (22%), Positives = 154/384 (40%), Gaps = 94/384 (24%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS------------------- 41
           + +++GG++ E EVS+ +    A+AL+   +    I V +                    
Sbjct: 24  VGIVLGGVAPEHEVSVITALQAAAALDRDRYTPVPIYVAKDGTWYTGDALLEVEAYRDLD 83

Query: 42  ------VGLVLA--------------------------HLKPDLAFNVLHGNFGEDGLVQ 69
                 + + LA                            + D+    LHG  GE+G VQ
Sbjct: 84  ALREDALPVALAPTPYGHLELLEDRAPGILKRLQRPALRRRIDVMLLGLHGGPGENGGVQ 143

Query: 70  AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DS 120
            + E   +PYT +G+  SAL MDK+ SK+V    G+PV   + +              + 
Sbjct: 144 GLCETFNVPYTSAGVFGSALGMDKVMSKRVCRQAGIPVVDFVALREGEWAGREAAALDEC 203

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTC 179
           +  +  P V+KP + GSS+GI  +     +  D     +  + D++++E+ V+   E+ C
Sbjct: 204 EATLDYPLVVKPARCGSSIGIAQVNTRAEL--DAAIEDALRYDDKVVVEKAVEALREINC 261

Query: 180 GVMGDA---SLDVTEIAVPKSD--FYSYELKYSSLNST---------------------- 212
            V+GD    +  V E  VP  D    +++ KY   +                        
Sbjct: 262 SVLGDGHEATPSVLEEPVPSDDDAVLTFQDKYMREDGEAAKAEGGTKSAESSPEGMAAQD 321

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
            ++PA +  +  + +Q LA        C G+ R DF+ D  + +V++ EIN  PG    S
Sbjct: 322 RIVPANLSDERTETIQDLAVRIFHQFECAGVVRIDFMIDESTGRVYFNEINTIPG--SFS 379

Query: 273 IFPEMAAYAGYSFRELLLWMVEDA 296
            +  +   +G SF  L+  +V  A
Sbjct: 380 FY--LWEPSGVSFDALVDRLVTIA 401


>gi|298378695|ref|ZP_06988579.1| LOW QUALITY PROTEIN: D-alanine-D-alanine ligase B [Escherichia coli
           FVEC1302]
 gi|298281029|gb|EFI22530.1| LOW QUALITY PROTEIN: D-alanine-D-alanine ligase B [Escherichia coli
           FVEC1302]
          Length = 215

 Score =  233 bits (594), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 64/215 (29%), Positives = 106/215 (49%), Gaps = 13/215 (6%)

Query: 91  MDKMRSKQVVSSCGVPVCPSILVNRFTMD---------SQHLISPPYVIKPLKGGSSLGI 141
            DK+RSK +    G+PV P + + R   +             +  P ++KP + GSS+G+
Sbjct: 4   WDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGM 63

Query: 142 IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYS 201
             +  + ++   L    ++ H +++LIE+++ G E T  ++G+  L    I  P   FY 
Sbjct: 64  SKVVAENALQDALRL--AFQHDEEVLIEKWLSGPEFTVAILGEEILPSIRIQ-PSGTFYD 120

Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
           YE KY S  + +  PA +       +Q L   A   +GC+G  R D + D    + + LE
Sbjct: 121 YEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLD-SDGQFYLLE 179

Query: 262 INVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            N  PGMT  S+ P  A  AG SF +L++ ++E A
Sbjct: 180 ANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 214


>gi|257784124|ref|YP_003179341.1| D-alanine--D-alanine ligase [Atopobium parvulum DSM 20469]
 gi|257472631|gb|ACV50750.1| D-alanine--D-alanine ligase [Atopobium parvulum DSM 20469]
          Length = 333

 Score =  233 bits (594), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 96/329 (29%), Positives = 152/329 (46%), Gaps = 38/329 (11%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AV+MGG S ER  SL SG   + ALE  G++V  +D D  +   L   KPD+AF  LHG
Sbjct: 5   VAVIMGGASFERNFSLKSGALVSEALEKCGYEVLPLDADAHLVDTLRAEKPDVAFVCLHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCG------VPVCPSILVN 114
             GEDG V A+LE L+IPY  S   +   + +K     +V          V   P I++ 
Sbjct: 65  AGGEDGAVPALLEFLKIPYVGSRPASCRAAWNKADMPFIVRQAWSKEESEVIWPPQIVLT 124

Query: 115 RFTMDSQHL--------------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160
                                  +  P  +KP+ GGS++G+  +     +   LL +  +
Sbjct: 125 ASAFKDLGAAAALDMVPERLGGGVGFPLAVKPVHGGSAMGLSKVDSADQLGKALLGALGF 184

Query: 161 NHGDQLLIEQYVDGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216
              D ++I+Q+VDG+E++  V+    G+ +L   EI+V K   Y  + +       H  P
Sbjct: 185 --DDSVIIQQWVDGVEVSVTVLSDADGEKTLPPVEISVIK-GIYDTDARLDPERIEHFCP 241

Query: 217 AK---------IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPG 267
            +          P+   + ++R A     A GCR ++R DF++D     V  + +   PG
Sbjct: 242 VRSESLAALGADPVAAREALERAALEVFTAYGCRDLARIDFIWD--GHHVMVMGLKTFPG 299

Query: 268 MTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +T  S+ P     AGY+  ++L  +VE A
Sbjct: 300 LTETSLVPMAIEAAGYAVEDVLAQLVEGA 328


>gi|297170214|gb|ADI21252.1| D-alanine-D-alanine ligase and related ATP-grasp enzymes
           [uncultured myxobacterium HF0010_08B07]
          Length = 297

 Score =  232 bits (593), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 77/301 (25%), Positives = 141/301 (46%), Gaps = 13/301 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + +L GG S E  +S  S +     ++ A F     D+       +      L F  +HG
Sbjct: 4   VIILYGGDSVESGISQQSAEGIMENIDQAKFSARMQDIKNFDFKSVDKET--LIFIAVHG 61

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117
             GEDG  Q +L+  +I +T S  +++    +K+ SK ++    +P     ++ +     
Sbjct: 62  KDGEDGTTQKLLKKRKIKFTGSDEISTRKCWNKISSKTLMVENAIPTPEFKVIKKNQKLN 121

Query: 118 -MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
             D     +  + +KP   GSS G+  +   +++   ++  ++  + + ++IE+  +  E
Sbjct: 122 LEDQFFSKNKSFFVKPNSNGSSFGVSRVDHIKNLEGAII--TARKYSEDVIIERAYNSAE 179

Query: 177 LTCGVMGDASL-DVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
            T G++   +L  +  IA     FY YE KY S  +  V    +   I  E++++A  A 
Sbjct: 180 YTVGILKGEALQPLEIIAEDSEGFYDYEAKYISKGTKKV--EVVDKKIKDELKKIALKAF 237

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
              GC+   R DF++D     V  LEIN  PG T  S+FP  A  +G +++EL+  ++ED
Sbjct: 238 YKHGCQTWGRVDFVYDGKDLGV--LEINTVPGFTEKSLFPLAAKLSGINYQELITNIIED 295

Query: 296 A 296
           +
Sbjct: 296 S 296


>gi|310658242|ref|YP_003935963.1| d-alanine-d-alanine ligase a [Clostridium sticklandii DSM 519]
 gi|308825020|emb|CBH21058.1| D-alanine-D-alanine ligase A [Clostridium sticklandii]
          Length = 306

 Score =  232 bits (593), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 82/296 (27%), Positives = 132/296 (44%), Gaps = 49/296 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS------------------- 41
           + ++ GG S+E EVSL S       L      V  I +DR                    
Sbjct: 3   IGLIFGGKSAEYEVSLQSAMHIYKRLNKDVHNVYLIGMDRDGFMHYFDGSIEEVSDGSWF 62

Query: 42  -------VGLVLAHLKP------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
                  V L     KP            +L F VLHG +GEDG +Q +LEL  IPY   
Sbjct: 63  DKKTSAEVILYSNKKKPGIYDNDKVIAELELVFPVLHGPYGEDGKLQGLLELSGIPYVGC 122

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD------SQHLISPPYVIKPLKGG 136
            +LASA  MDK  +K++ S  G+   P I    +         ++  +  P  IKP   G
Sbjct: 123 SVLASANGMDKDMAKKIFSYEGINQVPHITCYSYEQTQEIVSRAEANLGYPCFIKPANMG 182

Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS---LDVTEIA 193
           SS+GI   K  Q + L + +  ++ +  +++IE+ V+  E+   V+G+     + V    
Sbjct: 183 SSVGISKAKDKQQLVLAMQK--AFEYDHKIIIEKGVNAREIEVAVLGNCDNIRISVAGEI 240

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
           +P  +FY Y+ KY S  S  ++PA +  +  +++Q +A+ A++ +   G+ R  F 
Sbjct: 241 IPSDEFYDYDAKYKSNASQLIIPADLSFEADRQIQDMAYRAYKGLNAEGLCRIRFF 296


>gi|313888855|ref|ZP_07822516.1| D-ala D-ala ligase N-terminal domain protein [Peptoniphilus harei
           ACS-146-V-Sch2b]
 gi|312845224|gb|EFR32624.1| D-ala D-ala ligase N-terminal domain protein [Peptoniphilus harei
           ACS-146-V-Sch2b]
          Length = 390

 Score =  232 bits (592), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 83/365 (22%), Positives = 147/365 (40%), Gaps = 79/365 (21%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           + V+ GG S E EVS+ +G      ++ + +    I + +    +               
Sbjct: 4   IGVIFGGRSVEHEVSVITGMQIIENMDKSKYNPIPIYITKDGKFLSGESLKNFKAYKDQD 63

Query: 49  ---------------------------------------LKPDLAFNVLHGNFGEDGLVQ 69
                                                   K D  F  LHG FGEDG  Q
Sbjct: 64  FHDGVEVFFKPEYGNKNLYYVKHNPKKLFKAEYDSVEVYQKIDAIFFALHGTFGEDGCTQ 123

Query: 70  AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-------DSQH 122
            + EL+ +PYT  G++++A+ MDK+  ++V  S  +P+       R  +       +   
Sbjct: 124 GLFELMGMPYTGCGVMSAAVGMDKVIMRKVFESEDIPMTKYKYFYREELKNLKGLIEKCK 183

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGV 181
            ++ P  +KP   GSS+GI  ++    +   L  ++  ++  ++++E+  V+  E+   V
Sbjct: 184 DLNFPLFVKPANLGSSIGISRVENALDLSKALEVAA--HYDRKIIVEEAVVNPREINVAV 241

Query: 182 MG---DASLDVTEIAVPKSDFYSYELKYSSL-----NSTHVL----PAKIPLDIYKEVQR 229
           +G   D  +   E  +   D   YE KY S      +S        PA++  ++ KE++ 
Sbjct: 242 LGYENDLRVSAAEEPLGFKDLLKYEDKYVSGSKGAKSSQKHQNKKLPAELKPELEKEIKE 301

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           LA  A  AI   G++R DFL D    K +  EIN  PG     ++       G   ++L+
Sbjct: 302 LAKKAFSAIDGAGVARIDFLVD--GDKAYVNEINTLPGSIAFYLY----EVDGLMIKDLI 355

Query: 290 LWMVE 294
             ++E
Sbjct: 356 TRLIE 360


>gi|127513061|ref|YP_001094258.1| D-alanyl-alanine synthetase A [Shewanella loihica PV-4]
 gi|189083052|sp|A3QEV1|DDL_SHELP RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|126638356|gb|ABO23999.1| D-alanine--D-alanine ligase [Shewanella loihica PV-4]
          Length = 334

 Score =  231 bits (590), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 71/316 (22%), Positives = 133/316 (42%), Gaps = 36/316 (11%)

Query: 11  EREVSLSSGKACASALEDAGF-KVSQIDVD---------------------RSVGLVLAH 48
           E  +SL S     ++L       V ++++D                     R     LA 
Sbjct: 16  EHAISLLSANYFETSLAKLPHLNVLRVELDAKGQYQSKSGERCELTNRREIRFEDESLAP 75

Query: 49  LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
              D     +HG  GE G +Q+  EL+ +PY       S    +K+ +K   S+ G+P  
Sbjct: 76  WPVDYVIPCIHGYPGETGDIQSYFELINLPYFGCDAEGSRNCFNKITAKMWFSALGIPNT 135

Query: 109 PSILVNRFTMDSQHLIS------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
           P + +N+    +    +          +K    GSS+G   +     IP   + + ++++
Sbjct: 136 PYLFLNQLDEQAIAQTTDALAKWGSVFVKAASQGSSVGCYRVDDAAQIPA--ILADAFHY 193

Query: 163 GDQLLIEQYVDGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLN-STHVLPA 217
              +++E+ +   EL   V        +    E+      FY+Y+ KY++ + +T  + A
Sbjct: 194 SPYVVVEKTIQARELEVAVYQYRGETVATLPGEVICAGGTFYTYDEKYAADSKATTKVVA 253

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
           ++  +I ++++  A      +  R +SR DF   P   ++   EIN  PG+TP+S+FP+M
Sbjct: 254 EVSDEIAQQIRAYAVKVFDGMKLRHLSRIDFFLTP-EGEILLNEINTFPGLTPISMFPKM 312

Query: 278 AAYAGYSFRELLLWMV 293
            A  G  F + L   +
Sbjct: 313 LANHGDDFSQYLNEAI 328


>gi|325925852|ref|ZP_08187221.1| D-alanine--D-alanine ligase [Xanthomonas perforans 91-118]
 gi|325543683|gb|EGD15097.1| D-alanine--D-alanine ligase [Xanthomonas perforans 91-118]
          Length = 246

 Score =  230 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 68/232 (29%), Positives = 122/232 (52%), Gaps = 12/232 (5%)

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPP 127
           +  +P+  SGIL SA++MDK  +K+V+   G+ V P +  NR T     +      +  P
Sbjct: 1   MANLPFVGSGILGSAVAMDKDMAKRVLRDAGLAVAPFVCFNRHTAAMADVEALIAQLGLP 60

Query: 128 YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL 187
             +KP   GSS+G+  ++        L  + +++H  ++L+E  + G E+ C V+G+A+ 
Sbjct: 61  LFVKPANQGSSVGVSQVRSADQFAAALALALAYDH--KVLVEAAIAGREIECAVLGNATP 118

Query: 188 DVTEI--AVPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244
             +     V    FYSY+ KY S   +  V+PA I     + +Q++A  A+QA+ C G++
Sbjct: 119 QASVCGEVVVHDAFYSYQTKYISEHGAEIVIPADIDARTQQRIQQIAVQAYQALDCAGLA 178

Query: 245 RSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           R D        ++   E+N  PG T +S++P++   +G  +R L+  ++E A
Sbjct: 179 RVDVFL-CADGRIVINEVNTLPGFTRISMYPKLWQASGLDYRSLITRLIELA 229


>gi|15834763|ref|NP_296522.1| UDP-N-acetylmuramate--alanine ligase/D-alanine--D-alanine ligase
           [Chlamydia muridarum Nigg]
 gi|7190180|gb|AAF39021.1| UDP-N-acetylmuramate--alanine ligase/D-alanine--D-alanine ligase
           [Chlamydia muridarum Nigg]
          Length = 833

 Score =  230 bits (586), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 72/331 (21%), Positives = 139/331 (41%), Gaps = 41/331 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------------------- 40
           + ++ GG S E ++S+ S +  A  L  + ++V    + R                    
Sbjct: 480 LGLICGGRSCEHDISILSAQNIAKYLSHSFYEVQYFLITREGLWKTGSSLELSEETGKTI 539

Query: 41  -SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
               +     K D+   +LHG +GEDG +Q  LE +  PYT   ++ +A+ M+K+ +K+ 
Sbjct: 540 FDPEIAGKLSKVDVILPILHGPYGEDGAMQGFLETIGKPYTGPSLVFAAIGMNKVLTKRF 599

Query: 100 VSSCGVPVCPS--ILVNRFTMDSQHLI-------SPPYVIKPLKGGSSLGIIVIKKDQSI 150
           +S  G+PV P   + +  +  D +  +       S P  +K +  GSS+G+  +     +
Sbjct: 600 MSDLGIPVVPYLPLTLKGWKQDQEKCLAQIKAAFSFPMFVKSVHLGSSIGVFEVHDTNEL 659

Query: 151 PLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDV----TEIAVPKSDFYSYELK 205
              +  + ++   D + IE+   G  E+    +GD S             +  F  Y+ K
Sbjct: 660 RDAI--NEAFVRDDDVFIEESRLGCREIEVSFLGDGSGVFFVAGMHERRGRGGFIDYQEK 717

Query: 206 Y---SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
           Y      ++  V    +  +  +++  +A   ++ +  +G  R DF  D      +  EI
Sbjct: 718 YGLSGRASAQIVFDVDLSKETREQLLGVAEKIYRLLQGKGSCRIDFFVDN-EGSFWLSEI 776

Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           N  PGMT  S F       G++  +++  +V
Sbjct: 777 NPIPGMTTASPFLAAFVRKGWNREQIVHQLV 807


>gi|157375059|ref|YP_001473659.1| D-alanyl-alanine synthetase A [Shewanella sediminis HAW-EB3]
 gi|189083056|sp|A8FUK8|DDL_SHESH RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|157317433|gb|ABV36531.1| D-alanine--D-alanine ligase [Shewanella sediminis HAW-EB3]
          Length = 333

 Score =  230 bits (586), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 73/312 (23%), Positives = 132/312 (42%), Gaps = 36/312 (11%)

Query: 11  EREVSLSSGKACASALED-AGFKVSQIDVD------------------RSVGLVLAHLKP 51
           E  +SL S     ++L D  GF V ++++D                  + +       +P
Sbjct: 16  EHAISLLSANFFETSLADITGFNVLRVELDADGHYHTKDGDICELTNRKQIRFEDESKRP 75

Query: 52  ---DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
              D     +HG  GE G +Q+  EL+ +PY      AS    +K+ +K   S+ G+P  
Sbjct: 76  WPVDYVIPCIHGYPGETGDIQSYFELINLPYFGCDSEASRNCFNKVTAKMWFSALGIPNT 135

Query: 109 PSILVNRFTMDSQHLISPP------YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
           P I +N F  D+               IK    GSS+G   +     +   L +  ++++
Sbjct: 136 PYIFLNEFNDDAISQTEQALETWGSVFIKAASQGSSVGCYRVDSIDELASSLKE--AFSY 193

Query: 163 GDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLN-STHVLPA 217
              +++E+ +   EL            +    EI    + FY+++ KY++ + +   + A
Sbjct: 194 SPYVVVEKTIHARELEVAAYELDGEIVATKPGEIICASNTFYTFDEKYAADSQAETKVEA 253

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
            I  ++ +E++  A    + +    +SR DF       ++   EIN  PG+TP+S+FP+M
Sbjct: 254 DISDELSREIREYAVKVFKGMKLSHLSRIDFFLT-DENEILLNEINTFPGLTPISMFPKM 312

Query: 278 AAYAGYSFRELL 289
               G  F E L
Sbjct: 313 LQNHGDDFTEYL 324


>gi|150390714|ref|YP_001320763.1| D-alanine--D-alanine ligase [Alkaliphilus metalliredigens QYMF]
 gi|149950576|gb|ABR49104.1| D-alanine--D-alanine ligase [Alkaliphilus metalliredigens QYMF]
          Length = 339

 Score =  230 bits (586), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 80/286 (27%), Positives = 136/286 (47%), Gaps = 17/286 (5%)

Query: 26  LEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGL--VQAILELLEIPYTHSG 83
           +        +I VD  +   L     D+ FN+  G  GE     + A+LE+L IPY  SG
Sbjct: 38  ILSKKHNTVKIQVDEKISENLVKSDVDIVFNLSTGVRGESRQSQIPALLEMLGIPYVGSG 97

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIV 143
           ILA +L+++K  +K++    GVP     +           +  P + KP   GS  GI V
Sbjct: 98  ILAHSLALNKAMAKKIFQYHGVPTPAFQVFQTGEEKLDSNLKFPLIAKPACEGSGFGIHV 157

Query: 144 --IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS----LDVTE-----I 192
             +  D+   +  +      +   +L+E++++G E T GV+G+      L + E     I
Sbjct: 158 DSVVYDEQGLMKKVSELLRQYEPPVLVEEFIEGREFTVGVIGNGESKRILPIMEIDFEDI 217

Query: 193 AVPKSDFYSYELKYSSLN-STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
                 FY++E+K +  + + +  PA I + + K +      A   +GC+ I+R D L  
Sbjct: 218 PEEHGKFYTFEVKNNFGDQTKYHCPASISMALEKSIMENVSKAFDVLGCKDIARVDVLV- 276

Query: 252 PLSRKVFWLEINVQPGM-TPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             + + + LEIN  PG+    S  P+MA  AG S++EL++ ++E A
Sbjct: 277 -KNERPYILEINSLPGLKHLHSDLPKMAVVAGLSYKELIMEILEVA 321


>gi|283768801|ref|ZP_06341712.1| D-ala D-ala ligase N-terminal domain protein [Bulleidia extructa
           W1219]
 gi|283104587|gb|EFC05960.1| D-ala D-ala ligase N-terminal domain protein [Bulleidia extructa
           W1219]
          Length = 394

 Score =  230 bits (586), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 76/364 (20%), Positives = 150/364 (41%), Gaps = 74/364 (20%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS------------------V 42
           + V  GG S E EVS+ S +    AL+   ++V  + V +                   +
Sbjct: 5   VGVFFGGESVEHEVSIISAQQAIHALDKDKYEVIPLYVAKDRKIYYNPEKFFSVENFTNL 64

Query: 43  GLVLAH--------------LKP--------------DLAFNVLHGNFGEDGLVQAILEL 74
             +L                ++P              DLA  V+HG  GEDG +Q + E+
Sbjct: 65  PALLKESIQVTLVNLGNECAIRPVHIGLFQKKTLGTIDLAIPVMHGTNGEDGTIQGLFEM 124

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--------MDSQHLISP 126
           L+IP+    I  + +  DK+  K ++    +P+ P   V            ++  + +  
Sbjct: 125 LKIPFAGCDIYGAVIGQDKVFQKHILHDNHLPITPWFWVYGQDIETYQTQILEKVNSLGY 184

Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDA 185
           P ++KP + GSS+GI +   ++          +  + ++++ E+ +    E+ C V+GD 
Sbjct: 185 PVILKPARTGSSIGISIAHDNEEYL--DCFKDAMRYDEKIITEKVIKPMREINCSVIGDH 242

Query: 186 SLD----VTEIAVPKSDFYSYE---------LKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
           +      + E+   + +   ++          K     ++  +PA +  +  K +Q+LA 
Sbjct: 243 TGSRASVLEEVTQQEKELLDFDKKYGSGGSKGKSGMAATSRQVPAPLSHEETKYIQQLAK 302

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
              + +G  G+ R DF+ D  ++K++  EIN  PG    S+   +    G  F +L+  +
Sbjct: 303 DTFRVLGSAGVCRIDFIMDAETKKIYINEINTIPG----SLAFYLWKEEGVDFSKLMNQL 358

Query: 293 VEDA 296
           +  A
Sbjct: 359 ITLA 362


>gi|160879787|ref|YP_001558755.1| D-alanine--D-alanine ligase domain-containing protein [Clostridium
           phytofermentans ISDg]
 gi|160428453|gb|ABX42016.1| D-alanine--D-alanine ligase domain protein [Clostridium
           phytofermentans ISDg]
          Length = 347

 Score =  229 bits (585), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 76/301 (25%), Positives = 140/301 (46%), Gaps = 17/301 (5%)

Query: 10  SEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG--NFGEDGL 67
           +E + S+ +  A  +ALE     +  ++ D  +   L     D+ FN+  G    G +  
Sbjct: 40  AEYD-SIDTVLAIKNALECDNCHIELMEADTDLPKRLKETPVDIVFNIAEGLKGRGREAE 98

Query: 68  VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPP 127
           V A+L +  IP+T S      L++DK   K+V+S+  +      +  +         S P
Sbjct: 99  VPAVLNMFNIPFTGSDETTLCLALDKALCKRVLSTYRIRTPKYRVFTKDDNRLNTNFSFP 158

Query: 128 YVIKPLKGGSSLGII---VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
            ++KP   GSS GI    +    + +   L+  +   +G  +L+E+Y+DG E T GV+G+
Sbjct: 159 CIVKPNAEGSSKGISDICIATNKEELKT-LVTDNIKAYGQDMLVEEYIDGREFTVGVLGN 217

Query: 185 A-------SLDVTEIAVPKSDFYSYELKYSSLN-STHVLPAKIPLDIYKEVQRLAFLAHQ 236
                    +++  +   K + YS+ +K        +  P+K+  DI +E+  +A    +
Sbjct: 218 GDDVHVFSPMEIIYLKKNKFNIYSFNVKQDYKKLIRYECPSKLDPDIEEEMVFMAKKIFK 277

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP-VSIFPEMAAYAGYSFRELLLWMVED 295
            + C   SR DF  +    K +++EIN  PG+ P  S FP +A + G  +  L+  ++ +
Sbjct: 278 VLSCHDFSRIDFRLN-SEGKPYFIEINPLPGLAPGYSDFPMLAEFCGMDYVTLVRSILRN 336

Query: 296 A 296
           A
Sbjct: 337 A 337


>gi|114563717|ref|YP_751230.1| D-alanyl-alanine synthetase A [Shewanella frigidimarina NCIMB 400]
 gi|122299324|sp|Q080C3|DDL_SHEFN RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|114335010|gb|ABI72392.1| D-alanine--D-alanine ligase [Shewanella frigidimarina NCIMB 400]
          Length = 336

 Score =  229 bits (585), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 74/318 (23%), Positives = 139/318 (43%), Gaps = 37/318 (11%)

Query: 10  SEREVSLSSGKACASAL-EDAGFKVSQIDVDRSVGLVLAHLK------------------ 50
           +E ++SL S +   S+L +   F V ++ +D+         K                  
Sbjct: 15  AEHDISLMSARFFESSLAKSDKFSVLKLVLDKHGHYHTEDGKLCDLTNRREIRFEDNSTP 74

Query: 51  ---PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV 107
               D     +HG  GE G +Q+   L+++PY      AS+   +K+ +K   S+ GVP 
Sbjct: 75  AWSVDYVIPCIHGFPGETGDIQSYFNLIQLPYFGCESEASSNCFNKITAKMWFSALGVPN 134

Query: 108 CPSILVNRFTMDSQHLIS------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN 161
            P I +++   D+               +K    GSS+G   +    +I    +   +++
Sbjct: 135 TPYIFLHQLDDDAIKQTETAFDNWGSVFVKAASQGSSVGCYKVDVKANI--ANVLKDAFS 192

Query: 162 HGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLN--STHVL 215
           +   +++EQ +   EL   V        +    EI    + FYS++ KY++ +   T V+
Sbjct: 193 YAPYVVVEQTIHARELEVAVYQYQGEVVATLPGEIICDSNTFYSFDEKYATNSKARTDVV 252

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275
              +  +I + ++  A  A + +  R +SR DF       ++   EIN  PG+TP+S+FP
Sbjct: 253 ADNLSPEISQLIRDYAVKAFKGMKLRHLSRIDFFLTA-DNQILLNEINTFPGLTPISMFP 311

Query: 276 EMAAYAGYSFRELLLWMV 293
           +M    G++F E L+ ++
Sbjct: 312 KMLQNHGHNFTEYLIDVI 329


>gi|270284930|ref|ZP_06194324.1| bifunctional D-alanyl-alanine synthetase
           A/UDP-N-acetylmuramate--L-alanine ligase [Chlamydia
           muridarum Nigg]
 gi|270288956|ref|ZP_06195258.1| bifunctional D-alanyl-alanine synthetase
           A/UDP-N-acetylmuramate--L-alanine ligase [Chlamydia
           muridarum Weiss]
 gi|14194947|sp|Q9PLG1|MUDD_CHLMU RecName: Full=Bifunctional enzyme MurC/Ddl; Includes: RecName:
           Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase;
           Includes: RecName: Full=D-alanine--D-alanine ligase;
           AltName: Full=D-Ala-D-Ala ligase; AltName:
           Full=D-alanylalanine synthetase
          Length = 802

 Score =  229 bits (584), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 72/331 (21%), Positives = 139/331 (41%), Gaps = 41/331 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------------------- 40
           + ++ GG S E ++S+ S +  A  L  + ++V    + R                    
Sbjct: 449 LGLICGGRSCEHDISILSAQNIAKYLSHSFYEVQYFLITREGLWKTGSSLELSEETGKTI 508

Query: 41  -SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
               +     K D+   +LHG +GEDG +Q  LE +  PYT   ++ +A+ M+K+ +K+ 
Sbjct: 509 FDPEIAGKLSKVDVILPILHGPYGEDGAMQGFLETIGKPYTGPSLVFAAIGMNKVLTKRF 568

Query: 100 VSSCGVPVCPS--ILVNRFTMDSQHLI-------SPPYVIKPLKGGSSLGIIVIKKDQSI 150
           +S  G+PV P   + +  +  D +  +       S P  +K +  GSS+G+  +     +
Sbjct: 569 MSDLGIPVVPYLPLTLKGWKQDQEKCLAQIKAAFSFPMFVKSVHLGSSIGVFEVHDTNEL 628

Query: 151 PLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDV----TEIAVPKSDFYSYELK 205
              +  + ++   D + IE+   G  E+    +GD S             +  F  Y+ K
Sbjct: 629 RDAI--NEAFVRDDDVFIEESRLGCREIEVSFLGDGSGVFFVAGMHERRGRGGFIDYQEK 686

Query: 206 Y---SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
           Y      ++  V    +  +  +++  +A   ++ +  +G  R DF  D      +  EI
Sbjct: 687 YGLSGRASAQIVFDVDLSKETREQLLGVAEKIYRLLQGKGSCRIDFFVDN-EGSFWLSEI 745

Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           N  PGMT  S F       G++  +++  +V
Sbjct: 746 NPIPGMTTASPFLAAFVRKGWNREQIVHQLV 776


>gi|288920000|ref|ZP_06414320.1| D-alanine--D-alanine ligase [Frankia sp. EUN1f]
 gi|288348564|gb|EFC82821.1| D-alanine--D-alanine ligase [Frankia sp. EUN1f]
          Length = 319

 Score =  229 bits (584), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 98/308 (31%), Positives = 146/308 (47%), Gaps = 18/308 (5%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62
           VL GG+S EREVSLSSG     AL   G      DVD +    LA   P +   VLHG  
Sbjct: 9   VLAGGLSVEREVSLSSGSRLHEALSRIGVDTELRDVDDATLTALAGDPPAVVIPVLHGTS 68

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
           GEDG ++ +L+L  +PY  +   A   + DK  +K  V++ G+    ++ + R       
Sbjct: 69  GEDGTIREVLDLYGLPYVGAEPAACRSAFDKAAAKATVTASGISTPRAVTLPREAFHDLG 128

Query: 123 L----------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                      +  P V+KP  GGSS G+  +  +++  L     + + + D  LIEQ V
Sbjct: 129 AAQLIDRVVGRLGLPLVVKPRAGGSSFGVGRV--EEAGQLAEALMACFGYHDWALIEQAV 186

Query: 173 DGIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
            G+E+  GV+       +L   EI  P +  Y Y  +Y+   +T + PA++P  +     
Sbjct: 187 TGVEIAVGVVDTGSGPIALPAVEIE-PVTGPYDYAARYTPGATTFITPARLPAAVLDAAA 245

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
             A  AHQA+G R +SR+D + D       +LE+NV PGMT  S +P     AG  F  +
Sbjct: 246 AAAVAAHQALGLRDLSRTDLIVDAA-GVPQFLEVNVAPGMTDTSTWPMCLEAAGLEFGVV 304

Query: 289 LLWMVEDA 296
              +   A
Sbjct: 305 CRDLAAAA 312


>gi|308446762|ref|XP_003087258.1| hypothetical protein CRE_28014 [Caenorhabditis remanei]
 gi|308258347|gb|EFP02300.1| hypothetical protein CRE_28014 [Caenorhabditis remanei]
          Length = 328

 Score =  228 bits (583), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 90/318 (28%), Positives = 142/318 (44%), Gaps = 27/318 (8%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           +AV+ GGIS E EVS++S  +   A+   G +     + R    +               
Sbjct: 9   VAVIGGGISDEHEVSIASAASVVRAVAALGLEAVPFTIARDGRWLTDDGHRLPAHEALAR 68

Query: 49  -LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV 107
               DLAF VLHG  GEDG +  +L +  IP+  + + A AL MDK  +K +    G+  
Sbjct: 69  IADCDLAFPVLHGVDGEDGAIAGLLRMAGIPFVGAPVRAGALGMDKWATKLIADDLGIAT 128

Query: 108 CPSILVNRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
               L   +           + PP V+KP  GGSS G+ V+     +   + Q+ +  +G
Sbjct: 129 SRGALAGGWAAPVGAAFASELRPPLVVKPTTGGSSNGVFVVADRSDLVATVEQARA--YG 186

Query: 164 DQLLIEQYVDGIELTCGVMGDAS-----LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
           + +L+E+YV G E+   V  DA+         EI V     +    KY   ++   +PA 
Sbjct: 187 ETVLVEEYVRGREVDIAVFRDAAGGLRVGSTLEIGVVPGGVFDRAEKYD-GSAEFTIPAS 245

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278
           +       +++ A L ++A+GC G++R DF        V   E+N  PGMT  S  P M 
Sbjct: 246 LDPREEGAIRQAAVLLYEALGCAGVARFDFF--ATDDGVVLNEVNTSPGMTEQSQVPRMY 303

Query: 279 AYAGYSFRELLLWMVEDA 296
           A  G  +  L+  ++  A
Sbjct: 304 AAVGLDYAGLVGELIAAA 321


>gi|323453883|gb|EGB09754.1| hypothetical protein AURANDRAFT_24617 [Aureococcus anophagefferens]
          Length = 317

 Score =  228 bits (583), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 87/310 (28%), Positives = 146/310 (47%), Gaps = 22/310 (7%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+ER++SL  G   A AL   G++V+ +D+  ++ LV A  + D+ F  LHG
Sbjct: 11  IAVLCGGTSAERDLSLKGGADVAEALRARGYRVTIVDLTPALDLVAALRRVDVVFVCLHG 70

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC-GVPVCPSILVNRFTMD 119
             GEDG VQ  LE+L+IPYT SG++  ++ +DK+R+K+ +  C  V + P  L+      
Sbjct: 71  PLGEDGSVQGFLEVLKIPYTFSGVVTQSVCVDKVRTKRYLRGCEPVRLIPDQLL---ADG 127

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
           +   + PP ++K  + GSS G+        +     Q +    G + L+EQ++ G++L  
Sbjct: 128 APLRVPPPCMVKDPQSGSSRGVWKCDTADEVRAAAAQCA----GPRCLVEQFISGVDLVV 183

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNS-------------THVLPAKIPLDIYKE 226
            V    +L   E    K D+     K                     + PA +P  +  E
Sbjct: 184 CVNDGEALPAMEFKTDK-DWQDLASKNDLWGWAGADGSDGARAAIEKICPATLPAAVVDE 242

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
            +  A   +  +   G    +F        V+++E++  P MT  S+    A  AG SF 
Sbjct: 243 ARDTALAIYDFLEVEGAMNFEFRVTVDGAAVYFVEVSSVPAMTRASVHACCAEAAGLSFE 302

Query: 287 ELLLWMVEDA 296
           ++   ++  A
Sbjct: 303 DVAERILLTA 312


>gi|157962243|ref|YP_001502277.1| D-alanyl-alanine synthetase A [Shewanella pealeana ATCC 700345]
 gi|189083053|sp|A8H5A5|DDL_SHEPA RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|157847243|gb|ABV87742.1| D-alanine--D-alanine ligase [Shewanella pealeana ATCC 700345]
          Length = 334

 Score =  228 bits (583), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 72/312 (23%), Positives = 125/312 (40%), Gaps = 36/312 (11%)

Query: 11  EREVSLSSGKACASALEDA-GFKVSQIDVD---------------------RSVGLVLAH 48
           E  +SL S     + L     F V +++++                     R      A 
Sbjct: 16  EHSISLLSANFFEAQLATLPHFNVLRVELNAKGQYHTQAGELCELTNSQQLRFDDETKAP 75

Query: 49  LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
              D     +HG  GE G +Q+  EL+ +PY      +S+   +K+ +K   S+ G+P  
Sbjct: 76  WNVDYVIPCIHGYPGETGDIQSYFELINLPYFGCDSESSSNCFNKVTAKMWFSALGIPNT 135

Query: 109 PSILVNRFTMDSQHLISPPY------VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
           P I ++ F   S               IK    GSS+G   +   + +        ++  
Sbjct: 136 PYIFLSEFNQQSLEQAEAALAKWGSIFIKAASQGSSVGCYRVDSIEQL--ASSLEEAFTF 193

Query: 163 GDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLN-STHVLPA 217
              ++IE+ +   EL            +    EI    + FYS++ KY+  + +  V+ A
Sbjct: 194 SPYVVIEKTITARELEVAAYEADGEIIATKPGEIICASNTFYSFDEKYAENSQAQTVIEA 253

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
            +   I K++Q  A  A + +  R +SR DF       ++   EIN  PG T +S+FP+M
Sbjct: 254 DVDEAIAKQIQEYAIKAFKGMKLRHLSRIDFFLTE-DNEILLNEINTFPGQTQISMFPKM 312

Query: 278 AAYAGYSFRELL 289
               G++F + L
Sbjct: 313 LQNHGHNFAQYL 324


>gi|330443871|ref|YP_004376857.1| MurC/ddl bifunctional enzyme [Chlamydophila pecorum E58]
 gi|328806981|gb|AEB41154.1| MurC/ddl bifunctional enzyme [Chlamydophila pecorum E58]
          Length = 808

 Score =  228 bits (582), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 78/332 (23%), Positives = 136/332 (40%), Gaps = 42/332 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           + ++ GG S E E+SL S +  +       +  +   + R     +              
Sbjct: 453 IGLVCGGKSCEHEISLLSARHVSHRFSQEYYDCTFFVISRDGLWNVVQDLNTPLPKEQGS 512

Query: 49  -----------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSK 97
                      L  D    +LHG FGEDG +Q   E+L  PY    +L +A+SMDK+ +K
Sbjct: 513 PVLSSEIAKALLSIDFFLPILHGPFGEDGSIQGFFEILGKPYGGPDLLPAAISMDKLMTK 572

Query: 98  QVVSSCGVPVCPSILVNRFTMDSQ---------HLISPPYVIKPLKGGSSLGIIVIKKDQ 148
           +V S+ GVPV P   ++ F               + + P V+K    GSSLGI ++   +
Sbjct: 573 RVASAVGVPVVPYQELSLFAWKRNPEGCIRSILDIFTFPMVVKSSHLGSSLGIFLVNNKE 632

Query: 149 SIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK---SDFYSYELK 205
            +   + ++  ++     + E  ++  E+    +G            +     F  Y  K
Sbjct: 633 ELEEKISEAFLYDTD-IFIEESRLESREIEISCIGQPYSFYIAKPNERRGSQGFIGYHEK 691

Query: 206 YSSL---NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL-E 261
           Y      ++  +   ++P +    V+  A    +AI  +G +R DF  D      +WL E
Sbjct: 692 YGLNGISSARIIFDLQLPKESENRVKEFAERVFKAIQGKGCARIDFFLDEEGN--YWLSE 749

Query: 262 INVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           IN  PGMT  S F      + +S  ++L +++
Sbjct: 750 INPIPGMTASSSFLRAFEQSEWSAEKVLDYLI 781


>gi|300765781|ref|ZP_07075756.1| D-Ala-D-Ala ligase [Listeria monocytogenes FSL N1-017]
 gi|300513475|gb|EFK40547.1| D-Ala-D-Ala ligase [Listeria monocytogenes FSL N1-017]
          Length = 310

 Score =  228 bits (582), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 74/306 (24%), Positives = 136/306 (44%), Gaps = 59/306 (19%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---LAHLKPD------- 52
           +L GG S+E EVSL +  +  +AL+   F+ + I +      +   L   K D       
Sbjct: 7   LLYGGKSAEHEVSLQTAFSVINALDLEKFEAAPIYITNEGEWIQGPLLSGKLDFVEQLRF 66

Query: 53  ---------------------------------LAFNVLHGNFGEDGLVQAILELLEIPY 79
                                            + F +LHG  GEDG VQ + E+L IPY
Sbjct: 67  SATDTIKLATTESEKSEGEAISPAVLEADGQETVVFPLLHGPNGEDGTVQGLFEVLNIPY 126

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVN---------RFTMDSQHLISPPYVI 130
             +G+LAS+ +MDK+  K++ +  G+P  P++ V              + + +++ P  +
Sbjct: 127 VGNGVLASSAAMDKIVMKKIFADAGIPQVPAVAVRLIDWKNYQAEMVAEMEEVLTYPVFV 186

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--D 188
           KP   GSS+GI      + +      + ++ +  ++++EQ V   E+  GV+G+ +    
Sbjct: 187 KPANLGSSVGISKATNKKEL--ADAMTEAFLYDRRVVVEQGVVAREIEMGVLGNDTPVCS 244

Query: 189 VTEIAVPKS---DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
           V    +P+     FY Y+ KY   N+  ++P ++  +I ++++  A  A   +   G+ R
Sbjct: 245 VPGEILPEGAVATFYDYKAKYQDNNTALIIPTEVDPEILEQMKEYAVQAFLGLDASGLVR 304

Query: 246 SDFLFD 251
           +DF   
Sbjct: 305 ADFFLT 310


>gi|292558656|gb|ADE31657.1| D-alanine--D-alanine ligase [Streptococcus suis GZ1]
          Length = 341

 Score =  228 bits (581), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 81/285 (28%), Positives = 134/285 (47%), Gaps = 40/285 (14%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV----------------- 45
           +L GG S+EREVS+ S ++   A+    F V    + ++   +                 
Sbjct: 26  LLYGGRSAEREVSVLSAESVMRAINYDKFFVKTYFISQTGDFIKTQEFSQTPSADEKLMT 85

Query: 46  ------LAHLKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
                    ++P        + F VLHG  GEDG +Q  LE+L +PY  + IL+S+++MD
Sbjct: 86  NATIVEEQKIRPSDIYEEKAVVFPVLHGPMGEDGSIQGFLEVLRMPYVGTNILSSSVAMD 145

Query: 93  KMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           K+ +K+V+ S G+   P + V           + +  ++ P  +KP   GSS+GI   + 
Sbjct: 146 KITTKRVLESAGISQVPYVAVIEGENIDDKIAEIEGKLTYPVFVKPANMGSSVGISKAED 205

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYEL 204
              +   L    ++ +  ++L+EQ V+  E+  G++G+A +  T     V    FY Y+ 
Sbjct: 206 LAGLRKALDL--AFKYDSRVLVEQGVNAREIEVGLLGNADVKTTLPGEVVKDVAFYDYDA 263

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
           KY     T  +PAKI   I   ++  A  A +AIG  G+SR DF 
Sbjct: 264 KYIDNKITMEIPAKIDESIMDIMRDNAAKAFRAIGGCGLSRCDFF 308


>gi|17902566|emb|CAC84690.1| D-Ala:D-Lac ligase [Enterococcus faecium]
          Length = 289

 Score =  228 bits (581), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 72/286 (25%), Positives = 127/286 (44%), Gaps = 43/286 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           +A++ GG S E +VS+ S    A+ ++   F    I + ++    L              
Sbjct: 6   VAIIFGGCSEEHDVSVKSAIEIAANIDTEKFDPHYIGITKNGVWKLCKKPCTEWEADSLP 65

Query: 47  --------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
                                  + D+AF VLHG  GEDG +Q +  L  IPY    I +
Sbjct: 66  AILSPDRKTHGLLVMKESEYETRRIDVAFPVLHGKCGEDGAIQGLFVLSGIPYVGCDIQS 125

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           SA  MDK  +  +  + G+ V    ++++        ++ P  +KP + GSS G+  +  
Sbjct: 126 SAACMDKSLAYILTKNAGIAVPEFQMIDKGDKPEAGALTYPVFVKPARSGSSFGVTKVNG 185

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSY 202
            + +   +   ++  +  ++LIEQ + G E+ C VMG+       +V +I +    F  +
Sbjct: 186 TEELNAAI--EAAGQYDGKILIEQAISGCEVGCAVMGNEDDLIVGEVDQIRLSHGIFRIH 243

Query: 203 ---ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
              E +  S N+   +PA IP++  K VQ  A   ++ +GCRG++R
Sbjct: 244 QENEPEKGSENAMITVPADIPVEERKRVQETAKKVYRVLGCRGLAR 289


>gi|302672145|ref|YP_003832105.1| D-alanine-D-alanine ligase DdlA [Butyrivibrio proteoclasticus B316]
 gi|302396618|gb|ADL35523.1| D-alanine-D-alanine ligase DdlA [Butyrivibrio proteoclasticus B316]
          Length = 401

 Score =  228 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 88/370 (23%), Positives = 144/370 (38%), Gaps = 80/370 (21%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           +AVL GG S+E E+S+ S       +    + V  + + ++    +              
Sbjct: 5   LAVLFGGKSTEHEISIISAIQAIGHINRDKYDVIPVYITKNNDFYVGEDVDKIEEYTHIP 64

Query: 50  ----------------------------------KPDLAFNVLHGNFGEDGLVQAILELL 75
                                             + D+AF ++HG   EDG +Q  L  L
Sbjct: 65  ELIKKSTQVIWVKEGDKVSLMRYPMKKFGNNVISQVDIAFPIVHGTNVEDGTLQGYLATL 124

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--------SILVNRFTMDSQHLISPP 127
            +P     +L+SA+ M+K   K V+   G+PV             VN      +     P
Sbjct: 125 GLPVVGCDVLSSAVGMNKYVMKTVLKDNGIPVLDCKCYTWKDYEDVNALVEKIEAAFEYP 184

Query: 128 YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGD-A 185
            +IKPL  GSS+GI       ++   L     +    ++L+E  + D  E+ C V+GD  
Sbjct: 185 VIIKPLNLGSSIGIKKASDRDALIEALDL--GFEFSKKILVEPAISDLKEINCSVIGDYE 242

Query: 186 SLDVTEIAVP--KSDFYSYELKY-----------------SSLNSTHVLPAKIPLDIYKE 226
           +   +E   P    D  S+E KY                    +    +PA+I  +  +E
Sbjct: 243 NAKASECEEPVNSDDILSFEDKYIGGAKGSAKGAKTGGSKGMASLKRKIPAEITPERREE 302

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           ++ +A  A + +GC GISR DF+ D  + KV+  EIN  PG     +        G  + 
Sbjct: 303 IRTMAVDAFKCLGCSGISRIDFMIDKKTDKVYLNEINTIPGSLSFYL----WEPLGLKYT 358

Query: 287 ELLLWMVEDA 296
           +LL  ++E A
Sbjct: 359 DLLDEIIELA 368


>gi|218672834|ref|ZP_03522503.1| D-alanine/D-alanine ligase [Rhizobium etli GR56]
          Length = 289

 Score =  228 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 78/260 (30%), Positives = 136/260 (52%), Gaps = 14/260 (5%)

Query: 51  PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            D+ F VLHG  GEDG VQ + ++  +P    GIL SA ++DK  +K+++ + G+PV  +
Sbjct: 28  IDMLFPVLHGLHGEDGSVQGVAQVARVPLAGCGILGSAAALDKEIAKRLLRAAGLPVARA 87

Query: 111 ILVNRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQL 166
           + ++  T  S    +  +  P  IKP++ GSS+G+  +   Q     L  + ++ H   L
Sbjct: 88  VTIHEGTTPSLAALEGELGLPLFIKPVRQGSSVGVAKVHASQEFAGAL--AEAFRHDRTL 145

Query: 167 LIEQYVDGIELTCGVMGDASLD-----VTEIAVPKS-DFYSYELKYSSL-NSTHVLPAKI 219
           L E+++ G E+   V+ DA+         EI   +S  FYSY+ KY     +   +PA++
Sbjct: 146 LAEEFIAGREIEFSVLEDAAGKLFVSRPGEIVPAESHGFYSYDAKYIDETGAALKVPAEL 205

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279
           P ++   ++  A  A +A+GC G++R DF       +    E+N  PG T +S++ +  A
Sbjct: 206 PPEVEAAMRDAAAEAFRAVGCDGMARVDFFLT-SDMRFVINELNTIPGFTDISMYSKAMA 264

Query: 280 YAGYSFRELLLWMVEDASCL 299
            +G S+ E++  +VE     
Sbjct: 265 ASGVSYAEVIDRLVEHGMAR 284


>gi|301336328|ref|ZP_07224530.1| bifunctional D-alanyl-alanine synthetase
           A/UDP-N-acetylmuramate--L-alanine ligase [Chlamydia
           muridarum MopnTet14]
          Length = 802

 Score =  227 bits (580), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 73/331 (22%), Positives = 135/331 (40%), Gaps = 41/331 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           + +L GG S E ++S+ S K  A  L    ++V    + R        L           
Sbjct: 449 LGILCGGRSCEHDISILSAKNIARHLSSTFYEVQGFIITREGLWKKVSLLEGTEDSEKSI 508

Query: 50  ----------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
                     + D+   +LHG +GEDG +Q  LE +  PYT   ++ +A+ M+K+ +K+ 
Sbjct: 509 FDSEIAMQLERLDVIVPILHGPYGEDGAIQGFLETIGKPYTGPSVVFAAIGMNKVLTKRF 568

Query: 100 VSSCGVPVCPSILVN---------RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150
           +S  G+PV P + +          ++        S P  +K    GSS+G+  +    ++
Sbjct: 569 MSDLGIPVVPYLPLTLTGWKQEPEKWLAQIMKAFSFPMFVKAAHLGSSIGVFEVH--DAL 626

Query: 151 PLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPK----SDFYSYELK 205
            L      ++   + + IE+   G  E+    +GD +       + +      F  Y  K
Sbjct: 627 ELREAIHEAFVQDNDVFIEESRLGCKEIEVSFLGDGAGVFFVAGMHERRGSGGFIDYCEK 686

Query: 206 Y---SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
           Y      ++  V    +  ++ +++   A   ++ +  +G  R DFL D      +  EI
Sbjct: 687 YGLSGKPSAQIVFDVDLSQEMQEQLLGAAEKIYRLLQGKGSCRIDFLVD-DEGSFWLSEI 745

Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           N  PG T  S F       G+S  +++  +V
Sbjct: 746 NPIPGTTESSPFLTAFVRKGWSCEQIIHQLV 776


>gi|17902563|emb|CAC84688.1| D-Ala:D-Lac ligase [Enterococcus faecium]
          Length = 289

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 71/286 (24%), Positives = 127/286 (44%), Gaps = 43/286 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           +A++ GG S E +VS+ S    A+ ++   F    I + ++    L              
Sbjct: 6   VAIIFGGCSEEHDVSVKSAIEIAANIDTEKFDPHYIGITKNGVWKLCKKPCTEWEADSLP 65

Query: 47  --------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
                                  + D+AF VLHG  GEDG +Q +  L  IPY    I +
Sbjct: 66  AILSPDRKTHGLLVMKESEYETRRIDVAFPVLHGKCGEDGAIQGLFVLSGIPYVGCDIQS 125

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           SA  +DK  +  +  + G+ V    ++++        ++ P  +KP + GSS G+  +  
Sbjct: 126 SAACVDKSLAYILTKNAGIAVPEFQMIDKGDKPEAGALTYPVFVKPARSGSSFGVTKVNG 185

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSY 202
            + +   +   ++  +  ++LIEQ + G E+ C VMG+       +V +I +    F  +
Sbjct: 186 TEELNAAI--EAAGQYDGKILIEQAISGCEVGCAVMGNEDDLIVGEVDQIRLSHGIFRIH 243

Query: 203 ---ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
              E +  S N+   +PA IP++  K VQ  A   ++ +GCRG++R
Sbjct: 244 QENEPEKGSENAMITVPADIPVEERKRVQETAKKVYRVLGCRGLAR 289


>gi|167623784|ref|YP_001674078.1| D-alanyl-alanine synthetase A [Shewanella halifaxensis HAW-EB4]
 gi|189083051|sp|B0TRK1|DDL_SHEHH RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|167353806|gb|ABZ76419.1| D-alanine--D-alanine ligase [Shewanella halifaxensis HAW-EB4]
          Length = 333

 Score =  226 bits (576), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 69/312 (22%), Positives = 125/312 (40%), Gaps = 36/312 (11%)

Query: 11  EREVSLSSGKACASALEDA-GFKVSQIDVDRSVGLVLAHLK------------------- 50
           E  +SL S     + L     F V +++++          +                   
Sbjct: 16  EHSISLLSANFFETQLATLPHFNVLRVELNAKGQYRTQAGELCELTNSKQIRFNDQSKAP 75

Query: 51  --PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
              D     +HG  GE G +Q+  EL+ +PY      AS+   +K+ +K   S+ G+   
Sbjct: 76  WDVDYVIPCIHGYPGETGDIQSYFELINLPYFGCDSEASSNCFNKVTAKMWFSALGIRNT 135

Query: 109 PSILVNRFTMDSQHLISPPY------VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
           P I +N F   +               IK    GSS+G   +   + +        ++ +
Sbjct: 136 PYIFLNEFNQQAIEETERALEKWGSIFIKAASQGSSVGCYRVDNKEQL--ANSLEEAFKY 193

Query: 163 GDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLN-STHVLPA 217
              +++E+ ++  EL            +    EI    + FYS++ KY+  + +  V+ A
Sbjct: 194 SPYVVVEKTINARELEVAAYEVDGEIIATKPGEIICASNTFYSFDEKYAENSQAQTVIEA 253

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
            +   I K++Q  A  A + +  R +SR DF       ++   EIN  PG T +S+FP+M
Sbjct: 254 DVDEVIAKQIQEYAIKAFKGMKLRHLSRIDFFLT-DENEILLNEINTFPGQTQISMFPKM 312

Query: 278 AAYAGYSFRELL 289
               G++F + L
Sbjct: 313 LQNHGHNFAQYL 324


>gi|75675248|ref|YP_317669.1| D-alanine--D-alanine ligase [Nitrobacter winogradskyi Nb-255]
 gi|74420118|gb|ABA04317.1| D-alanine--D-alanine ligase [Nitrobacter winogradskyi Nb-255]
          Length = 330

 Score =  225 bits (574), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 96/334 (28%), Positives = 152/334 (45%), Gaps = 43/334 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID---VDRSVGLVLAHLKP------ 51
           + +L GG + ER VS++S +A   AL +A      +    VD     +  H +P      
Sbjct: 3   ITILFGGSNKERLVSVASAQALHHALPEADLWFWNLRDEIVDVRSETLRDHARPFEDEFV 62

Query: 52  ------------------DLAFNV-LHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
                             D    + LHG   E+G +QA+ EL  IP+T SG  AS L+ D
Sbjct: 63  PGGSGAPLERALDRARAEDRVLVLGLHGGRAENGELQAMCELRRIPFTGSGSAASHLAFD 122

Query: 93  KMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152
           K+ +K+ V+S GVP    +L+    +D         V KP   GSS G+I +   Q I  
Sbjct: 123 KVAAKRFVASAGVPTPAHVLLE--DIDHALAEHGRLVAKPACDGSSYGLIFVNAPQDIVT 180

Query: 153 DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA-----SLDVTEIAVPKSDFYSYELKYS 207
               + + ++    +IE +V G+E TCGV+  +     +L   EI VP    + Y  KY 
Sbjct: 181 VREAAKTEDY----VIEPFVSGVEATCGVLEHSDGSVVALPPVEI-VPAEGAFDYAAKYL 235

Query: 208 SLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPG 267
           +  +  + P +   +I  ++   +  AH+A+ CRG SR+DF+         +LE N  PG
Sbjct: 236 AKTTQEICPGRFSPEIAAQIMDHSLRAHRALSCRGYSRTDFIVT--GNGPIYLETNTLPG 293

Query: 268 MTPVSIFPEMAAYAGYSFRELL-LWMVEDASCLR 300
           +T  S++P+     G  F + L   +V     +R
Sbjct: 294 LTAASLYPKALHAQGVGFADFLRDQIVLAEKAVR 327


>gi|92116839|ref|YP_576568.1| D-alanine--D-alanine ligase [Nitrobacter hamburgensis X14]
 gi|91799733|gb|ABE62108.1| D-alanine--D-alanine ligase [Nitrobacter hamburgensis X14]
          Length = 340

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 89/328 (27%), Positives = 144/328 (43%), Gaps = 46/328 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSV-----GLVLAHLKPD--- 52
           + +L GG + ER VS++S +A   AL +A   +   D+   V      ++L H +P    
Sbjct: 3   ITILFGGSNKERLVSVASAQALHRALPEA--DLWFWDIRDDVHNVRSEVLLDHARPFEDE 60

Query: 53  ----------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
                                 +    LHG   E+G +QA+ EL  IP+T SG  AS L+
Sbjct: 61  FVPGGTSMPFEQALDRARAEGRVLVLGLHGGRAENGELQAMCELRGIPFTGSGSAASHLA 120

Query: 91  MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150
            DK+ +K+  +  GV     + +               + KP + GSS G+I +   Q  
Sbjct: 121 FDKVAAKRFAALAGVTTPAGVPLEEIDRAFAEHGR--LIAKPARDGSSYGLIFVNAKQDF 178

Query: 151 PLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA-----SLDVTEIAVPKSDFYSYELK 205
                 + +  +    +IE +V GIE TCGV+  +     +L   EI VP    + Y  K
Sbjct: 179 VAVRHAAKTEEY----VIEPFVSGIEATCGVLERSDGTVVALPPVEI-VPAEGRFDYASK 233

Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           Y +  +  + P +    I   +   A  AH+A+ CRG SR+DF+     ++  +LE N  
Sbjct: 234 YLAQTTQEICPGRFSSSITARIMDHALRAHRALSCRGYSRTDFIVT--GKEPVYLETNTL 291

Query: 266 PGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           PG+T  S++P+     G  F + L   +
Sbjct: 292 PGLTAASLYPKALKAQGIGFADFLRDQI 319


>gi|111222491|ref|YP_713285.1| D-alanine--D-alanine ligase B [Frankia alni ACN14a]
 gi|111150023|emb|CAJ61718.1| D-alanine--D-alanine ligase B [Frankia alni ACN14a]
          Length = 321

 Score =  223 bits (570), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 97/308 (31%), Positives = 147/308 (47%), Gaps = 18/308 (5%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62
           +L GG+S EREVSL SG     AL   G +    DVD +    LA   PD+ F VLHG  
Sbjct: 9   ILAGGLSPEREVSLRSGGRLRDALTRIGVEAELADVDAATLPALAADPPDVVFPVLHGTS 68

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ- 121
           GEDG ++ +L+L ++PY  +   A  ++ DK  +K  V + GV    ++ + R       
Sbjct: 69  GEDGTIREVLDLYDLPYVGAAPPACRVAFDKATAKAAVGAAGVATPAAVTLPREAFHDLG 128

Query: 122 ---------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                      +  P V+KP  GGS+ G+  +  D +  L     S + + D  LIE+ V
Sbjct: 129 AAALIERIVARLGLPVVVKPRAGGSAFGVSRV--DDAGGLAEALMSCFGYHDSALIERAV 186

Query: 173 DGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
            G+E+T GV+    G  +L   EI  P +  Y Y  +Y++  +    PA++   + +   
Sbjct: 187 SGVEITVGVVEVGDGPVALPAVEIE-PAAGVYDYAARYTAGATAFFTPARLDDAVLRAAA 245

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
             A  AH+ +G R +SR+D + D      F LE+NV PGMT  S +P     AG     +
Sbjct: 246 ATAVTAHRVLGLRDLSRTDMIVDAAGVAQF-LEVNVAPGMTDTSTWPMGLHAAGLDLAVV 304

Query: 289 LLWMVEDA 296
              +   A
Sbjct: 305 CRDLAARA 312


>gi|297621521|ref|YP_003709658.1| putative D-alanine--D-alanine ligase [Waddlia chondrophila WSU
           86-1044]
 gi|297376822|gb|ADI38652.1| putative D-alanine--D-alanine ligase [Waddlia chondrophila WSU
           86-1044]
          Length = 380

 Score =  223 bits (570), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 88/365 (24%), Positives = 144/365 (39%), Gaps = 78/365 (21%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-------------VDRSVGLVLA 47
           +AVL GG S E E+S+ +G     AL    +K+  +              ++RS    L 
Sbjct: 4   LAVLFGGRSIEHEISVITGLQAILALNPKKYKILPVYFALNGKWYTGDPLLERSFYRKLP 63

Query: 48  HL---------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYT 80
                                          D      HG +GEDG VQ +LEL  +PYT
Sbjct: 64  AAYSDLTEITLLPDPSIGGFKDLALNRTYPVDRCLLCFHGQYGEDGCVQGLLELAGLPYT 123

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ---------HLISPPYVIK 131
            S +L+SAL+M K  +K ++ +  +P  P ++V++    S            +  P  IK
Sbjct: 124 GSRVLSSALTMSKSHTKLLLQALNIPCLPHVVVDKQEAVSDLAAVRKKILDTLRYPLFIK 183

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASL--D 188
           P   GSS+GI       S+   L +   + +    +IE Y+D  +E+   V+        
Sbjct: 184 PNHLGSSIGIAKATDKNSLDRALAKV--FLYDSAAIIEPYLDNLLEINVSVLEGDPPRSS 241

Query: 189 VTEIAVPKSDFYSYELKYSSLN--------------STHVLPAKIPLDIYKEVQRLAFLA 234
             EI +   +  SYE KY                  +  + P  + L I + V   A  A
Sbjct: 242 AVEIPIASQEALSYEDKYLKGGAKSTGGSSQGMAGLTRMIDPQDLDLKIKQGVINHALKA 301

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF----PEMAAYAGYSFRELLL 290
            + + C G+ R DF+ D  +  +++ E N  PG     ++    P++       + ELL 
Sbjct: 302 FKELSCSGVCRFDFMLDTSTETLYFNEANPIPGSLSFYLWDRTEPKLL------YSELLD 355

Query: 291 WMVED 295
            ++E 
Sbjct: 356 VLIER 360


>gi|57234544|ref|YP_181371.1| D-ala D-ala ligase [Dehalococcoides ethenogenes 195]
 gi|57224992|gb|AAW40049.1| D-ala D-ala ligase [Dehalococcoides ethenogenes 195]
          Length = 338

 Score =  223 bits (568), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 86/305 (28%), Positives = 141/305 (46%), Gaps = 18/305 (5%)

Query: 11  EREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGL 67
           E + S  + +A  +AL  AG  V ++   +     +   K DL FN+  G       +  
Sbjct: 26  EYD-SPETVEAITNALTQAGHTVYRLGGGKEFLRRVQEQKLDLVFNIAEGLGNYRSREAQ 84

Query: 68  VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ---HLI 124
           +  ILE+L+IPYT S     A+ +DK  +K++V+  G+      LV      S       
Sbjct: 85  IPGILEMLDIPYTGSDPQTLAVCLDKPLTKKLVADAGIKTARWQLVTSCEELSAIDWSGF 144

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPL--DLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
             P  +KP   GSS G+    +  S      +       +   +LIE+++ G E+T GV+
Sbjct: 145 PLPAFLKPACEGSSKGVRFASRAGSAKEIVSMAAELLTAYEQPVLIEEFISGEEITVGVI 204

Query: 183 GDASLDVTEI--AVPKSDF----YSYELKYSSLN-STHVLPAKIPLDIYKEVQRLAFLAH 235
           G+    V  I   VPK+      YS E+K +      + +PA +P +    +++    A+
Sbjct: 205 GNIQPKVLGIMRVVPKTKTDYFVYSVEVKRNWRQMVEYEVPAALPAETLSRIEKATLDAY 264

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-IFPEMAAYAGYSFRELLLWMVE 294
           + +GCR + R DF   P     ++LE+N  PG+ PVS   P MA+  G S  EL+L +++
Sbjct: 265 KVLGCRDLCRMDFRVSP-DGIPYFLEVNPLPGLNPVSGDLPIMASKLGISHAELVLKILD 323

Query: 295 DASCL 299
            A   
Sbjct: 324 TALAR 328


>gi|330836876|ref|YP_004411517.1| D-alanine--D-alanine ligase [Spirochaeta coccoides DSM 17374]
 gi|329748779|gb|AEC02135.1| D-alanine--D-alanine ligase [Spirochaeta coccoides DSM 17374]
          Length = 388

 Score =  223 bits (568), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 94/369 (25%), Positives = 151/369 (40%), Gaps = 76/369 (20%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           +AVL GG S E +VS  S +     L  AG+ V  I + R+    L              
Sbjct: 4   VAVLSGGRSPEHDVSRMSAENICKELVAAGYGVLPIVITRNGRWFLQDVHESVAVIRQEA 63

Query: 47  ----------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
                             L  D+ F V HG  GEDG +QA+LEL  +PY  SG +AS + 
Sbjct: 64  ERGVSIHPGDGLWMNGEKLAVDIVFPVTHGTEGEDGRLQALLELAHLPYAGSGTVASMMG 123

Query: 91  MDKMRSKQVVSSCGVPVCPSILVNRFTMDS------------------------------ 120
           M K  +K V    G+PV PSIL++   +                                
Sbjct: 124 MYKNLAKDVARILGIPVTPSILLSPDDIAWLGNDEDAPFPRLFTSFDISPDSTGTARADL 183

Query: 121 -----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175
                Q  +    ++KP   GSS+G+  + +  +         ++  G+++L+E ++  +
Sbjct: 184 FLGVLQEKLGKSLLVKPEASGSSVGVTALPQPGAEIFLDAVFMAYIPGERVLVETFIPDV 243

Query: 176 -ELTCGVMGDASLDVT------EIAVPKSDFYSYELKYS-SLNSTHVLPAKIPLDIYKEV 227
            EL C ++      VT           +    SY++KYS   ++T   P  I  +  + +
Sbjct: 244 MELECALLEAEDEIVTAGPGLVRKPAGEESILSYDIKYSVHRHATMEYPPPIAREEAEMI 303

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRK---VFWLEINVQPGMTPVSIFPEMAAYAGYS 284
              A     A+GC G +R DF  DP  +    +F+ EIN  PG+T  S +P +    G  
Sbjct: 304 ATYARSLFSALGCTGYARVDFFIDPSGKPDARIFFNEINTLPGLTDTSHWPFLMKCKGLE 363

Query: 285 FRELLLWMV 293
           + ++LL ++
Sbjct: 364 WPQMLLEIL 372


>gi|91977855|ref|YP_570514.1| D-alanine--D-alanine ligase [Rhodopseudomonas palustris BisB5]
 gi|91684311|gb|ABE40613.1| D-alanine--D-alanine ligase [Rhodopseudomonas palustris BisB5]
          Length = 329

 Score =  222 bits (567), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 94/332 (28%), Positives = 150/332 (45%), Gaps = 51/332 (15%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFK-------VSQIDVDRSVGLVLAHLKP---- 51
           +L GG S ER VS++S +A  +AL DA          V  +  D     +LAH +P    
Sbjct: 5   ILFGGTSKERLVSVASAQALHAALPDAELWFWNDDDLVHVVAAD----ALLAHTRPFEES 60

Query: 52  ---------------DLA-------FNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
                          D A          LHG   E+G +QA+ E+  +P+T SG  AS +
Sbjct: 61  FHPAGGGIGPLERALDRAATEQRLLVLGLHGGVAENGELQAMCEMRGVPFTGSGAAASHV 120

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS 149
           + DK+ +K+  +  G+     I ++    +         + KP + GSS G+  I   Q 
Sbjct: 121 AFDKIAAKRFAAIAGIRAPAGITLDH--AERALATYGRLIAKPTRDGSSYGLFFIDAKQD 178

Query: 150 IPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA-----SLDVTEIAVPKSDFYSYEL 204
           +      + + ++    LIE +V G+E TCGV+  A     +L   EI VP    + Y+ 
Sbjct: 179 LVAVRNAAKTEDY----LIEPFVCGVEATCGVLEQADGALLALPPVEI-VPADGGFDYKA 233

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           KY + ++  + P +   ++   +   A  AH+ +GCRG SRSDF+         +LE N 
Sbjct: 234 KYLAKSTQEICPGRFTPEVSAVIMDYAVKAHRVMGCRGYSRSDFIVAADG--PIFLETNT 291

Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            PG+T  S++P+     G SF + L   +  A
Sbjct: 292 LPGLTKASLYPKALKAQGISFDDFLRGQIAIA 323


>gi|221195322|ref|ZP_03568378.1| D-alanine--D-alanine ligase [Atopobium rimae ATCC 49626]
 gi|221185225|gb|EEE17616.1| D-alanine--D-alanine ligase [Atopobium rimae ATCC 49626]
          Length = 333

 Score =  222 bits (567), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 87/326 (26%), Positives = 146/326 (44%), Gaps = 38/326 (11%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AV+MGG S ER  SL SG+  + +L  +GF V  +D D  +   L   KPD+AF  +HG
Sbjct: 5   VAVIMGGTSFERNFSLLSGRLVSESLARSGFDVLTLDADAHLVDTLRAEKPDVAFICMHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS-CG-----VPVCPSILVN 114
             GEDG V A+LE L IPY  S   +   + +K     ++    G     V   P +++ 
Sbjct: 65  AGGEDGAVPALLEFLRIPYVGSRPASCRAAWNKADMPFLMRRVYGKHESLVVWPPQLVLP 124

Query: 115 RFTMDSQHLI--------------SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160
                                     P  +KP+ GGS++G+  + K + +   L+ + + 
Sbjct: 125 ASAFKDLGAAKALDIIPERLGGGSGFPLAVKPVHGGSAMGLSRVDKPEDLGHALMGALA- 183

Query: 161 NHGDQLLIEQYVDGIELTCGVMGD----ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216
            + D ++I+ +V+G+E++  V+G       L   EI V K   Y  + +  +    H  P
Sbjct: 184 -YDDSVIIQHWVEGVEVSVTVLGTPGSEKVLPPVEIEV-KEGIYDTDARLETSRVNHFCP 241

Query: 217 AKIP---------LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPG 267
            +            +    +++ A   ++A  CR  +R DF++D    KV  + +   PG
Sbjct: 242 VRDESLAALGSNVDNARVALEQAACEVYRAYDCRDFARVDFIWD--GHKVMVMGLKTFPG 299

Query: 268 MTPVSIFPEMAAYAGYSFRELLLWMV 293
           +T  S+ P     AG    E+L  +V
Sbjct: 300 LTETSLVPMAIEAAGLKRDEVLAHLV 325


>gi|317128999|ref|YP_004095281.1| D-alanine--D-alanine ligase [Bacillus cellulosilyticus DSM 2522]
 gi|315473947|gb|ADU30550.1| D-alanine--D-alanine ligase [Bacillus cellulosilyticus DSM 2522]
          Length = 714

 Score =  221 bits (565), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 73/301 (24%), Positives = 140/301 (46%), Gaps = 19/301 (6%)

Query: 16  LSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL--------KPDLAFNVLHGNFGEDG- 66
           L + K   + L   G +V   + D+++   L           +P L FN+ +G  G+   
Sbjct: 28  LETIKNIKNGLLAGGHQVKTFEGDKNIINKLEDFMPSVISGERPGLVFNLSYGIQGKGRY 87

Query: 67  -LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS 125
             V  ILE++ +PY  SG    AL++DK+ +K ++   G+P     +++         +S
Sbjct: 88  MHVPGILEMIGVPYVGSGPETHALALDKVVTKMILLQKGLPTPKFTVLDNPDSKFHEDLS 147

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD- 184
            P ++KP     S G+ ++  ++ +  D +++         L+E+Y++G E+  G++G+ 
Sbjct: 148 YPLIVKPKNEAVSFGLKIVNNEEELR-DGVKTIYEKFNSPTLVEEYIEGREVNVGLLGNN 206

Query: 185 --ASLDVTEIAVPKS-DFYSYELKYSSLNST--HVLPAKIPLDIYKEVQRLAFLAHQAIG 239
              +L   E+   +    Y++E K +    T   V PA I  ++ K+VQ+LA    +A+ 
Sbjct: 207 PVEALPPVELVFGEGPQIYTFEDKKNKSGRTVEKVCPAPISEELTKKVQQLAIDTFKALD 266

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
           C   +R DF  D      + LE+N    +     F   A   G ++ +L+  +V+  +C 
Sbjct: 267 CYDTARVDFRIDKEGN-PYILEVNSMASLGADGSFVFAADKVGLNYSDLMNRIVDI-TCE 324

Query: 300 R 300
           R
Sbjct: 325 R 325


>gi|270307989|ref|YP_003330047.1| D-alanine--D-alanine ligase [Dehalococcoides sp. VS]
 gi|270153881|gb|ACZ61719.1| D-alanine--D-alanine ligase [Dehalococcoides sp. VS]
          Length = 338

 Score =  221 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 89/302 (29%), Positives = 150/302 (49%), Gaps = 18/302 (5%)

Query: 11  EREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGL 67
           E + S  + +A  +AL+ AG  V ++   +     +   K DL FN+  G       +  
Sbjct: 26  EYD-SPETVEAITTALKAAGHTVYRLGGGKEFLRRVQEQKLDLVFNISEGLGNYRSREAQ 84

Query: 68  VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ---HLI 124
           + +ILE+L+IPYT S     A+ +DK  +K++V+S G+      LVN     S       
Sbjct: 85  IPSILEMLDIPYTGSDPQTLAICLDKPLTKKLVASAGIKTARWQLVNNCEELSAIDWSGF 144

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW--NHGDQLLIEQYVDGIELTCGVM 182
             P  +KP   GSS G+    + +SI   +  ++     +   +LIE++++G E+T GV+
Sbjct: 145 PLPAFLKPACEGSSKGVRFASRAESIDEIMSMAADLLTTYEQPVLIEEFINGEEITVGVI 204

Query: 183 GDASLDVTEI--AVPKSDF----YSYELKYSSLN-STHVLPAKIPLDIYKEVQRLAFLAH 235
           G+ S +V  I   VPK+      YS E+K +      + +PA +P +    +++    A+
Sbjct: 205 GNTSPEVLGIMRVVPKTKTDYFVYSIEVKRNWRQMVEYEVPAALPGETLARIEKATLDAY 264

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-IFPEMAAYAGYSFRELLLWMVE 294
           + + CR + R DF   P     ++LE+N  PG+ PVS   P MA+  G S  EL+L ++ 
Sbjct: 265 KVLECRDLCRMDFRISP-DGVPYFLEVNPLPGLNPVSGDLPIMASKLGISHAELVLKILN 323

Query: 295 DA 296
            A
Sbjct: 324 TA 325


>gi|187235564|gb|ACD01995.1| putative D-alanine-D-alanine ligase [Clostridium septicum]
          Length = 211

 Score =  220 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 72/216 (33%), Positives = 115/216 (53%), Gaps = 8/216 (3%)

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI---LV 113
            LHG FGEDG VQ++L+ L+IPY+    L+SAL MDK  +K+++ S  +     +    V
Sbjct: 1   ALHGKFGEDGTVQSVLQTLDIPYSGCEPLSSALCMDKDLTKRILKSNNIRTARWLNVRSV 60

Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
                D    +  P  IKP  GGSS+    I K + +   + +   W   ++++IE+++ 
Sbjct: 61  EEIDYDKIEEMKYPVFIKPTNGGSSVATFKITKKEDVEEAVREGLKW--DNEVMIEEFIK 118

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           G E+TC V       V  I  PK+DF+ Y  KYS   +  V+  ++   ++KEV+++A  
Sbjct: 119 GEEITCPVFKGEMFPVIAIR-PKTDFFDYTQKYSGDGAEEVI-IELEEKLHKEVEQMALD 176

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
            ++A+ C   SR D +     R  + LE+N  PGMT
Sbjct: 177 TYKALKCSVYSRIDMIVTE-DRTPYILELNTFPGMT 211


>gi|170727019|ref|YP_001761045.1| D-alanyl-alanine synthetase A [Shewanella woodyi ATCC 51908]
 gi|169812366|gb|ACA86950.1| D-alanine--D-alanine ligase [Shewanella woodyi ATCC 51908]
          Length = 359

 Score =  220 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 66/309 (21%), Positives = 127/309 (41%), Gaps = 36/309 (11%)

Query: 11  EREVSLSSGKACASALEDA-GFKVSQIDVD------------------RSVGLVLAHLKP 51
           E  +SL S     ++L       + ++++D                  + +        P
Sbjct: 40  EHAISLMSADFLETSLAKEPEINLLRVELDGQGHYRTQDGRSCELTNRKEIRFAAEEQAP 99

Query: 52  ---DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
              D     +HG  GE G +Q+  +L+++P+      +S+   +K+ +K   S+ GVP  
Sbjct: 100 WPVDYVIPCIHGFPGETGDIQSYFDLIKLPFFGCDSESSSNCFNKVTAKMWFSALGVPNT 159

Query: 109 PSILVNRFTMDSQHLISPPY------VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
           P I +N    +S               IK    GSS+G   +     +   L Q+ S+  
Sbjct: 160 PYIFLNELNQESIAQTKQALENWGSIFIKAASQGSSVGCYRVDSQDELVSSLEQAFSF-- 217

Query: 163 GDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLN-STHVLPA 217
              +++E+ ++  EL            +    EI    + FYS++ KY++ + +   + A
Sbjct: 218 SPYVIVEKTINARELEVAAYELNGEIVATKPGEIICASNTFYSFDEKYAANSKAETKVEA 277

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
            +  ++ +++Q  A    + +    +SR DF       ++   EIN  PG+TP+S+FP+M
Sbjct: 278 DVSEEVAQQIQAYAIKVFKGMKLSHLSRIDFFLTE-DNEILLNEINTFPGLTPISMFPKM 336

Query: 278 AAYAGYSFR 286
               G  F 
Sbjct: 337 LQNHGDDFT 345


>gi|190359231|sp|B1KI99|DDL_SHEWM RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
          Length = 335

 Score =  220 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 66/309 (21%), Positives = 127/309 (41%), Gaps = 36/309 (11%)

Query: 11  EREVSLSSGKACASALEDA-GFKVSQIDVD------------------RSVGLVLAHLKP 51
           E  +SL S     ++L       + ++++D                  + +        P
Sbjct: 16  EHAISLMSADFLETSLAKEPEINLLRVELDGQGHYRTQDGRSCELTNRKEIRFAAEEQAP 75

Query: 52  ---DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
              D     +HG  GE G +Q+  +L+++P+      +S+   +K+ +K   S+ GVP  
Sbjct: 76  WPVDYVIPCIHGFPGETGDIQSYFDLIKLPFFGCDSESSSNCFNKVTAKMWFSALGVPNT 135

Query: 109 PSILVNRFTMDSQHLISPPY------VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
           P I +N    +S               IK    GSS+G   +     +   L Q+ S+  
Sbjct: 136 PYIFLNELNQESIAQTKQALENWGSIFIKAASQGSSVGCYRVDSQDELVSSLEQAFSF-- 193

Query: 163 GDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLN-STHVLPA 217
              +++E+ ++  EL            +    EI    + FYS++ KY++ + +   + A
Sbjct: 194 SPYVIVEKTINARELEVAAYELNGEIVATKPGEIICASNTFYSFDEKYAANSKAETKVEA 253

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
            +  ++ +++Q  A    + +    +SR DF       ++   EIN  PG+TP+S+FP+M
Sbjct: 254 DVSEEVAQQIQAYAIKVFKGMKLSHLSRIDFFLTE-DNEILLNEINTFPGLTPISMFPKM 312

Query: 278 AAYAGYSFR 286
               G  F 
Sbjct: 313 LQNHGDDFT 321


>gi|27381710|ref|NP_773239.1| D-alanine--D-alanine ligase B [Bradyrhizobium japonicum USDA 110]
 gi|27354879|dbj|BAC51864.1| bll6599 [Bradyrhizobium japonicum USDA 110]
          Length = 330

 Score =  219 bits (560), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 94/331 (28%), Positives = 156/331 (47%), Gaps = 46/331 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV-----LAHLKP---- 51
           + +L GG + ER VS++S +A   AL +A   +   DV+  V +V     L H +P    
Sbjct: 5   ITILFGGSNRERLVSVASAQALHQALPEA--DLWWWDVEDRVHVVQSKQLLEHARPFEDE 62

Query: 52  --------------------DLAFNV-LHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
                               D    + LHG   E+G +Q + E   +P+T SG  +S L+
Sbjct: 63  FKPGTSGIPLVQALDQAKAEDRVLVLGLHGGCAENGELQVMCEARGVPFTGSGSASSHLA 122

Query: 91  MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150
            DK+ +K   +  GV    +I ++   +D+        + KP + GSS G+I +   Q +
Sbjct: 123 FDKIAAKHFAALGGVTPPANIALD--DIDAAFAEYGRLIAKPARDGSSYGLIFVNARQDL 180

Query: 151 PLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA-----SLDVTEIAVPKSDFYSYELK 205
              +   ++  H ++ +IE Y+ G+E TCGV+        SL   EI +P    + Y  K
Sbjct: 181 ---VAVRNAAKH-EEYVIEPYIAGVEATCGVLERTDGSIVSLPPIEI-IPGEGNFDYAAK 235

Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           Y    +  + P +   +I   +++ A LAH+A+ C G SRSDF+       + +LE N  
Sbjct: 236 YLLSTTQEICPGRFTPEITAALKQQAMLAHRAMSCTGYSRSDFIVSAKG--LVYLETNTL 293

Query: 266 PGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           PG+T  S++P+     G +F + L  +VE A
Sbjct: 294 PGLTKSSLYPKALKAEGIAFVDFLRGLVELA 324


>gi|85714979|ref|ZP_01045964.1| D-alanine--D-alanine ligase [Nitrobacter sp. Nb-311A]
 gi|85698176|gb|EAQ36048.1| D-alanine--D-alanine ligase [Nitrobacter sp. Nb-311A]
          Length = 329

 Score =  219 bits (560), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 94/329 (28%), Positives = 146/329 (44%), Gaps = 42/329 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDA-----GFKVSQIDVDRSVGLVLAHLKPDLAF 55
           + +L GG + ER VS++S +A   AL +A       +   IDV        A    D   
Sbjct: 3   ITILFGGSNKERLVSVASAQALHHALPEADLWFWNHRDEVIDVRPEALRNHARPFEDEFV 62

Query: 56  NV-----------------------LHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
                                    LHG   E+G +QA+ EL  IP+T SG  AS L+ D
Sbjct: 63  PAGEGAPLERALDKAKAEGRVLVLGLHGGRAENGELQAMCELRRIPFTGSGSAASHLAFD 122

Query: 93  KMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152
           K+ +K+ V+S GVP    I +   ++D         V KP   GSS G+I +      P 
Sbjct: 123 KVAAKRFVASAGVPTPAHIPLQ--SIDRALAEHGRLVAKPACDGSSYGLIFV----DAPQ 176

Query: 153 DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA-----SLDVTEIAVPKSDFYSYELKYS 207
           D++        +  +IE +V G+E TCGV+  +     +L   EI VP    + Y  KY 
Sbjct: 177 DIVTVREAAKTEDYVIEPFVSGVEATCGVLEHSDGSVVALPPVEI-VPAEGAFDYAAKYL 235

Query: 208 SLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPG 267
           +  +  + P +   +I +++   +  AH A+ CRG SR+DF+     +   +LE N  PG
Sbjct: 236 AKTTQEICPGRFSPEIAEQIMDYSLRAHLALSCRGYSRTDFIVT--GKGPIYLETNTLPG 293

Query: 268 MTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +T  S++P+        F + L   +  A
Sbjct: 294 LTAASLYPKALHAQNIGFADFLRDQIMLA 322


>gi|153004284|ref|YP_001378609.1| D-alanine--D-alanine ligase [Anaeromyxobacter sp. Fw109-5]
 gi|152027857|gb|ABS25625.1| D-alanine--D-alanine ligase [Anaeromyxobacter sp. Fw109-5]
          Length = 731

 Score =  219 bits (560), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 84/304 (27%), Positives = 145/304 (47%), Gaps = 15/304 (4%)

Query: 6   GGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGED 65
           G   +E + S  + +A   A+   G +V  ++    +  VLA    D+ FN+  G  G +
Sbjct: 364 GDEEAEYD-SPKTLQAIREAIASYGHEVVDLEATTELPFVLAATPVDVVFNIAEGFRGRN 422

Query: 66  G--LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
               V A+LELL+IPYT S   A ++S+DK  +K++V + GV      +++         
Sbjct: 423 RESAVPALLELLDIPYTGSDPAALSVSLDKALAKRMVRTHGVLTPDYAVMHTGKERLPRE 482

Query: 124 ISPPYVIKPLKGGSSLGIIVIK-KDQSIPL-DLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
           +S P ++KP+  G+S G+         + L ++ +     +    L+E YV G E T G+
Sbjct: 483 LSFPLLVKPVAEGTSKGVTKKSIVRDELELREVARELIAKYRQPALVEAYVAGREFTVGL 542

Query: 182 MGD---ASLDVTEIAVPK----SDFYSYELKYSSLN-STHVLPAKIPLDIYKEVQRLAFL 233
           +G+     L   EI        +  YS+E+K    +   + +PA++       ++R A  
Sbjct: 543 LGERRPRVLPPMEIVFLDASDPTPIYSFEMKQDWNDKIRYEVPARLSPRELDRLERAARE 602

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP-VSIFPEMAAYAGYSFRELLLWM 292
              A+GCR I+R DF  D   R ++++E N  PG+ P  S    +A  AG  +R L+  +
Sbjct: 603 CFTALGCRDIARVDFRMDAEGR-IYFIECNPLPGLAPGWSDLVLIAQAAGIEYRALIGEI 661

Query: 293 VEDA 296
           +  A
Sbjct: 662 LAFA 665



 Score =  184 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 75/302 (24%), Positives = 129/302 (42%), Gaps = 22/302 (7%)

Query: 17  SSGKACASALEDAGFKVSQIDVDRSV---GLVLAHLKPDLAFNVLHGNFGE--DGLVQAI 71
            +  A A+ALE  G +V +++V          L    PDL FN   G  G   +    A+
Sbjct: 24  ETVDALAAALERLGHRVERLEVSGPASRTVARLEAFGPDLIFNTAEGRRGRFREAFFPAL 83

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIK 131
            + L +PYT S   A AL++DK  +K V++  GV       V        + +  P ++K
Sbjct: 84  FDELGMPYTGSDAYALALTLDKQLTKLVLAQHGVATPRWQYVEEARQLQPNALRYPVIVK 143

Query: 132 PLKGGSSLGIIVIKKDQSIPL--DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS--- 186
           P   GSS GI      +      ++++ +   +   LL+E+++ G ++T   +  A+   
Sbjct: 144 PNFEGSSKGITQDSVVEDSLRLHEVVREALRRYPAGLLVEEFIVGRDVTVPYLEAAAPER 203

Query: 187 ---LDVTEIAVPKS-------DFYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAH 235
              L   E  + ++         Y YELK        V  PAK+     + +Q+L    +
Sbjct: 204 HGVLQPVEYVIDEAAAATRRYAIYDYELKTKLDRYVSVRAPAKLKRSQAERIQQLCETVY 263

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           + +G R + R D         +++LEIN  P + P +     AA  G     +L  ++E 
Sbjct: 264 RQLGIRDLGRIDLRL-GEDGAIYFLEINALPSLEPGAGIYASAALEGLHADAVLGAVIES 322

Query: 296 AS 297
           A+
Sbjct: 323 AT 324


>gi|329848165|ref|ZP_08263193.1| D-ala D-ala ligase protein [Asticcacaulis biprosthecum C19]
 gi|328843228|gb|EGF92797.1| D-ala D-ala ligase protein [Asticcacaulis biprosthecum C19]
          Length = 329

 Score =  219 bits (560), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 95/328 (28%), Positives = 145/328 (44%), Gaps = 43/328 (13%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNV----- 57
           +L GG S ER VS++S +A A AL DA       D   +V    A    D  F +     
Sbjct: 5   ILFGGTSRERLVSVASAQALAHALPDADLWFWDHDGTVNVTSPAALHAHDRPFELPFRAD 64

Query: 58  ------------------------LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDK 93
                                   LHG   E+G  Q + E   +P+T SG  AS L+ DK
Sbjct: 65  GILIGDMAGSLDLAVHENRVLVLGLHGGSAENGEFQVLAEARGVPFTGSGSAASHLAFDK 124

Query: 94  MRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153
             +K+     GV    S+ ++       H      + KP + GSS G+I +   Q +   
Sbjct: 125 TAAKRFAGLAGVHSPSSVSLDELDEAFSHYGK--LIAKPAQDGSSFGLIYVNSSQDLAAV 182

Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA-----SLDVTEIAVPKSDFYSYELKYSS 208
             ++ +  +    +IE +V G E TCGV+  A     +L   EI VP    + Y+ KY +
Sbjct: 183 RREAKTTAY----VIEPFVTGPEATCGVLEQADGSLIALPPVEI-VPAEGTFDYKSKYLA 237

Query: 209 LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268
             +  + PA+   +I  +++ L+  AH+A+ CRG SRSDF+         +LE N  PG+
Sbjct: 238 AATQEICPARFASEIMAQLRDLSIKAHKAMSCRGYSRSDFII--SDHGPVYLETNTLPGL 295

Query: 269 TPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           T  S++P+     G  F + L   +E A
Sbjct: 296 TKASLYPKSLKAQGIEFVDFLNGQIELA 323


>gi|150391473|ref|YP_001321522.1| D-alanine--D-alanine ligase domain-containing protein [Alkaliphilus
           metalliredigens QYMF]
 gi|149951335|gb|ABR49863.1| D-alanine--D-alanine ligase domain protein [Alkaliphilus
           metalliredigens QYMF]
          Length = 714

 Score =  219 bits (559), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 68/301 (22%), Positives = 138/301 (45%), Gaps = 19/301 (6%)

Query: 16  LSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL--------KPDLAFNVLHGNFGEDG- 66
           L +       L   G +V   + D+++   L           +P L FN+ +G  G+   
Sbjct: 28  LETINKIKEGLTAGGHQVKTFEGDKNIITKLEKFMPSVISGERPGLVFNLSYGIQGKGRY 87

Query: 67  -LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS 125
             V  ILE+L IPY  SG    A+++DK+ +K ++   G+P     ++++   + +  + 
Sbjct: 88  MHVPGILEMLGIPYVGSGPETHAIALDKIVTKMILIQKGLPTPKFTVMDKPDSEIKDNLK 147

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD- 184
            P ++KP     S G+ ++  ++ +  D +++         L+E+Y++G E+  G++G+ 
Sbjct: 148 YPLIVKPKDEAVSFGLKIVHNEEELR-DGVKTIYEAFNTPTLVEEYIEGREINVGLLGNN 206

Query: 185 --ASLDVTEIAVPKS-DFYSYELKYSSLNST--HVLPAKIPLDIYKEVQRLAFLAHQAIG 239
              ++   E+   +    Y+YE K ++   T   + PA +  +  +++++LA     A+G
Sbjct: 207 PVEAMPPVELTFGEGLQIYTYEDKKNTSGRTVEKICPAPLSDEKTEQIKQLAIDTFNALG 266

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
           C   +R DF  D      + LE+N    +     F   A   G  +  L+  ++ D +C 
Sbjct: 267 CYDSARVDFRLDQEGN-PYILEVNSMASLGKSGSFVYAAEKMGLDYVALVNRLI-DVTCE 324

Query: 300 R 300
           R
Sbjct: 325 R 325


>gi|310821816|ref|YP_003954174.1| d-alanine-d-alanine ligase family protein [Stigmatella aurantiaca
           DW4/3-1]
 gi|309394888|gb|ADO72347.1| D-alanine-D-alanine ligase family protein [Stigmatella aurantiaca
           DW4/3-1]
          Length = 725

 Score =  219 bits (558), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 80/301 (26%), Positives = 149/301 (49%), Gaps = 17/301 (5%)

Query: 10  SEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDG--L 67
           +E + S ++ +A   A+   G +V  ++ ++ +  VLA    D+ FN+  G  G +    
Sbjct: 369 AEYD-SPATLQAIREAIASWGHEVVDLEANQELPSVLASTPLDVVFNIAEGFKGRNRESQ 427

Query: 68  VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPP 127
           V A+LELL+IPYT S     ++++DK  +K++V   G+      L+           + P
Sbjct: 428 VPAMLELLDIPYTGSDPATLSIALDKALAKKIVRQAGIHTPNFQLMLTGKERLNKDFTFP 487

Query: 128 YVIKPLKGGSSLGI---IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
            ++KP+  GSS G+    V   +  +  ++++  +  +    L+E+Y+ G E T G++G+
Sbjct: 488 LMVKPVAEGSSKGVVSKSVCHSEAELR-EVVKEIASKYKQPALVEEYIGGREFTVGLLGE 546

Query: 185 ---ASLDVTEIA----VPKSDFYSYELKYSSLNS-THVLPAKIPLDIYKEVQRLAFLAHQ 236
                L   EI       K+  YS++ K    +   +  PAK+   + + ++  A  +  
Sbjct: 547 RRPRVLPPMEIVFLDKEEKNPVYSFQHKLDWTDRIRYDAPAKLEPALLERLRAAARGSFM 606

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP-VSIFPEMAAYAGYSFRELLLWMVED 295
           A+GCR ++R DF  D   R ++++E N  PG+TP  S    +A  AG  +R L+  ++  
Sbjct: 607 ALGCRDVARIDFRMDDKGR-LYFIECNPLPGLTPGWSDLVLIAQGAGMDYRTLIGEIMAP 665

Query: 296 A 296
           A
Sbjct: 666 A 666



 Score =  192 bits (488), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 73/303 (24%), Positives = 131/303 (43%), Gaps = 24/303 (7%)

Query: 17  SSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---PDLAFNVLHGNFGE--DGLVQAI 71
            +  A A A+E  G ++ + +V       +A L+   PDL FN   G  G   +    A+
Sbjct: 24  ETVNALAGAIERLGHRLERFEVSGPASRTVARLEAYSPDLIFNTAEGRRGRFREAFYPAL 83

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIK 131
            + L  PYT S   A A+++DK  +K +++  G+       V + +  +   +  P ++K
Sbjct: 84  FDELGFPYTGSDAYALAVTLDKQLTKLILAKHGIRTPGWQYVEKLSELTAENLRFPVIVK 143

Query: 132 PLKGGSSLGI---IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG----- 183
           P   GSS GI    + +    +   + Q+ +  +   +L+E+Y+ G +LT   +      
Sbjct: 144 PNFEGSSKGITQDSIAETLDEVRAKVTQALA-KYPAGVLVEEYIGGKDLTVPFLAAVDND 202

Query: 184 -DASLDVTEIAVP-------KSDFYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLA 234
            D  L   E  +        K   Y YELK    ++  V  PA I     ++V+++A   
Sbjct: 203 YDGVLSPVEYVIDPAATVGRKYPIYDYELKTKHHSAVRVRAPANISAKTAEDVRKMAQTI 262

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            Q + CR + R DF         ++LEIN  P + P +     A   G     ++  +++
Sbjct: 263 FQVLDCRDLGRIDFRLSDA-GVPYFLEINALPSLEPGAGIYASAELDGLHLDGVINSIIQ 321

Query: 295 DAS 297
            A+
Sbjct: 322 SAA 324


>gi|325168553|ref|YP_004280343.1| D-alanine-D-alanine ligase protein [Agrobacterium sp. H13-3]
 gi|325064276|gb|ADY67965.1| D-alanine-D-alanine ligase protein [Agrobacterium sp. H13-3]
          Length = 234

 Score =  218 bits (557), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 66/230 (28%), Positives = 119/230 (51%), Gaps = 14/230 (6%)

Query: 77  IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKP 132
           +P    GIL SA ++DK  +KQ++ + G+PV  ++ V+   + S    +  +  P  +KP
Sbjct: 1   MPLVGCGILGSATALDKDIAKQLLRAAGLPVARAVTVHADRVPSFDTLEIALGLPLFVKP 60

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL----- 187
            + GSS+G+  +  +Q     L  +  + H  +LL E+++ G E+ C V+ DA       
Sbjct: 61  ARQGSSVGVRKVSGNQEFAPAL--AEGFKHDRKLLAEEFIRGREIECSVLEDAKGGLFVS 118

Query: 188 -DVTEIAVPKSDFYSYELKYSSLN-STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
                I      FYSY+ KY   + +   +PA++P ++  +++  A LA +A+GC G++R
Sbjct: 119 RPGEIIPAESHGFYSYDAKYIDDDGAALTVPAELPPEVETKIRETAALAFRALGCDGMAR 178

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
            DF            E+N  PG T +S++ +  A +G S+ E++  +VE 
Sbjct: 179 VDFFLTE-DMAFLVNEVNTIPGFTDISMYAKAMAASGVSYPEVIDRLVEH 227


>gi|269217857|ref|ZP_06161711.1| D-alanine--D-alanine ligase [Actinomyces sp. oral taxon 848 str.
           F0332]
 gi|269212792|gb|EEZ79132.1| D-alanine--D-alanine ligase [Actinomyces sp. oral taxon 848 str.
           F0332]
          Length = 281

 Score =  218 bits (557), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 76/282 (26%), Positives = 145/282 (51%), Gaps = 23/282 (8%)

Query: 33  VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
           V  +DVD ++   L  ++PD+ + ++HG+ GEDG +Q++LEL+ +PY  +   A  ++ D
Sbjct: 3   VKVLDVDANLLQSLKSMQPDVVWPLIHGSTGEDGSLQSLLELVGVPYVGTPPAACRIASD 62

Query: 93  KMRSKQVVSSCGVPVCPSILVNRFTMDS----------QHLISPPYVIKPLKGGSSLGII 142
           K  +  V+S+ G+ V  S+ + +               +     P V+KP +GGS+LG+ 
Sbjct: 63  KAVAGAVLSTAGLNVPDSVTIPQKLFREVGVGQVLDLIKARFDFPLVVKPAQGGSALGVT 122

Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSD 198
           ++     +P  ++   +  + ++  +EQY++G E+   V+       +L   EIA     
Sbjct: 123 IVASAAGLPRAMVDCFA--YDERARVEQYIEGAEVAVSVVQTGSEPRALPPVEIAA--DG 178

Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
            Y Y+ +Y +  + + +PA++  +    V+  A  AH  +G R +SR+D + D   R  +
Sbjct: 179 PYDYDARYFAGRAEYFVPARLSEEDTAAVKEAAERAHLVLGLRYLSRTDIILDDAGRA-W 237

Query: 259 WLEINVQPGMTPVSIFPEMAAYAGY----SFRELLLWMVEDA 296
            L++NV PGMT  S+FP+ A         +  +L + ++  A
Sbjct: 238 ILDVNVAPGMTETSLFPQAATADALESDTTVDDLYVEILNAA 279


>gi|86749124|ref|YP_485620.1| D-alanine--D-alanine ligase [Rhodopseudomonas palustris HaA2]
 gi|86572152|gb|ABD06709.1| D-alanine--D-alanine ligase [Rhodopseudomonas palustris HaA2]
          Length = 329

 Score =  218 bits (555), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 100/330 (30%), Positives = 149/330 (45%), Gaps = 47/330 (14%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV-----LAHLKP------ 51
           +L GG S ER VS++S +A  +AL DA  ++   + D SV  V     LAH +P      
Sbjct: 5   ILFGGTSKERLVSVASAQALHAALPDA--ELWFWNDDDSVHAVTAEALLAHARPFEEAFR 62

Query: 52  -------------DLA-------FNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSM 91
                        D A          LHG   E+G +QA+ E+  +P+T SG  AS L+ 
Sbjct: 63  PAGENIGPLERALDRAAIEQRLLVLGLHGGVAENGELQAMCEMRGVPFTGSGAAASHLAF 122

Query: 92  DKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
           DK+ +K+  +  GV     I +               + KP + GSS G+  I   Q + 
Sbjct: 123 DKVAAKRFAAIAGVRAPAGIALAEAEAALAAHGR--LIAKPARDGSSYGLFFINAKQDLV 180

Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA-----SLDVTEIAVPKSDFYSYELKY 206
                + S ++    LIE +V GIE TCGV+  A     +L   EI VP    + Y  KY
Sbjct: 181 AVRDAARSEDY----LIEPFVSGIEATCGVLEQADGSLLALPPIEI-VPADGGFDYTAKY 235

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
            + ++  + P +    I   +   A  AH+ +GCRG SRSDF+         +LE N  P
Sbjct: 236 LAKSTQEICPGRFAPQISARIMEDAVKAHRVMGCRGYSRSDFIVVADG--PIFLETNTLP 293

Query: 267 GMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           G+T  S++P+     G +F + L   +  A
Sbjct: 294 GLTKASLYPKALQAQGIAFVDFLHGQIALA 323


>gi|297583027|ref|YP_003698807.1| D-alanine--D-alanine ligase domain-containing protein [Bacillus
           selenitireducens MLS10]
 gi|297141484|gb|ADH98241.1| D-alanine--D-alanine ligase domain protein [Bacillus
           selenitireducens MLS10]
          Length = 714

 Score =  216 bits (551), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 70/295 (23%), Positives = 135/295 (45%), Gaps = 18/295 (6%)

Query: 16  LSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL--------KPDLAFNVLHGNFGEDG- 66
           L + K     L+  G +V   + D+++   L           +P L FN+ +G  G+   
Sbjct: 28  LETIKKIKDGLQSLGHQVKTFEGDKNIIAKLEEFMPSVISGERPGLVFNLSYGIQGKGRY 87

Query: 67  -LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS 125
             V  ILE++ +PY  SG    AL++DK+ +K ++   G+P      + +        ++
Sbjct: 88  MHVPGILEMIGVPYVGSGPETHALALDKVVTKMILLQKGLPTPRFAELEKPDSPITAELT 147

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD- 184
            P ++KP     S G+ ++  ++ +  D +++         L+E+Y++G E+  G++G+ 
Sbjct: 148 YPLIVKPKNEAVSFGLKIVHNEEELR-DGVKTIYDTFQSPTLVEEYIEGREVNVGLLGNN 206

Query: 185 --ASLDVTEIAVPKS-DFYSYELKYSSLNS--THVLPAKIPLDIYKEVQRLAFLAHQAIG 239
              +L   E+        ++YE K S   S    V PA +  ++ ++V++LA     A+ 
Sbjct: 207 PVEALPPVELVFGDGPQIFTYEDKTSGQGSRVQKVCPAPLDDELMEKVKQLAIDTFHALN 266

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           C   +R DF  D  +   + LE+N    +     F   A   G S+ E++  +VE
Sbjct: 267 CFDTARVDFRIDK-NGNPYILEVNSMASLGADGSFVYAAQTLGMSYAEIMNRIVE 320


>gi|197121819|ref|YP_002133770.1| D-alanine--D-alanine ligase [Anaeromyxobacter sp. K]
 gi|196171668|gb|ACG72641.1| D-alanine--D-alanine ligase [Anaeromyxobacter sp. K]
          Length = 728

 Score =  216 bits (551), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 79/300 (26%), Positives = 145/300 (48%), Gaps = 15/300 (5%)

Query: 10  SEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGE--DGL 67
           +E + S  + +A   A+   G +V  ++  + + L L     D+ FN+  G  G   +  
Sbjct: 368 AEYD-SPKTLQAIREAIASWGHEVVDLEATQDLPLQLVSTPVDVVFNIAEGFKGRSRESQ 426

Query: 68  VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPP 127
           V ++LELL+IPYT S   A ++S+DK  +K++V + G+     +++N         ++ P
Sbjct: 427 VPSLLELLDIPYTGSDPAALSVSLDKALAKRMVRTHGILTPDYLVLNTGNERLPRELTFP 486

Query: 128 YVIKPLKGGSSLGIIV--IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD- 184
            ++KP+  G+S G+    + +D+    ++ +     +    L E YV G E T G++G+ 
Sbjct: 487 LIVKPVAEGTSKGVTRKSVVRDEPELREVARELIAKYRQPALAEGYVSGREFTVGLLGER 546

Query: 185 --ASLDVTEIAVPKSD----FYSYELKYSSLNS-THVLPAKIPLDIYKEVQRLAFLAHQA 237
               L   EI    +      YS+E+K        + +PAK+     + +++ A     A
Sbjct: 547 RPRVLPPMEIVFLDAKDPTPIYSFEMKQDWNERIRYEVPAKLSPRELERLEKAARECFTA 606

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP-VSIFPEMAAYAGYSFRELLLWMVEDA 296
           +GCR ++R DF  D   R + ++E N  PG+ P  S    +A  AG  +R L+  ++  A
Sbjct: 607 LGCRDVARLDFRMDAEGR-IHFIECNPLPGLAPGWSDLVLIAQAAGMDYRALIGEILSFA 665



 Score =  176 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 77/301 (25%), Positives = 128/301 (42%), Gaps = 22/301 (7%)

Query: 17  SSGKACASALEDAGFKVSQIDVDRSVGLV---LAHLKPDLAFNVLHGNFGE--DGLVQAI 71
            +  A A A+E  G +V +I+V          L    PDL FN   G  G   +    A+
Sbjct: 24  ETVDALAGAIERLGHRVERIEVSGPASRTVTRLEAFGPDLIFNTAEGRRGRFREAFFPAL 83

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIK 131
            + L +PYT S   A ++++DK  +K V++  GV       V        + +  P ++K
Sbjct: 84  FDELGMPYTGSDAYALSVTLDKQLTKLVLAQKGVRTPRWQYVEEPWQLQVNALRYPVIVK 143

Query: 132 PLKGGSSLGIIVIKKDQS--IPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD- 188
           P   GSS GI             +++Q     +   LL+E++V G +LT   +  A+ + 
Sbjct: 144 PNFEGSSKGITQDSVVDDPMRLHEVVQDGLARYPAGLLVEEFVVGRDLTVPFLEAAAPER 203

Query: 189 ---------VTEIAVP---KSDFYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAH 235
                    V + AV    K   Y YELK     +  V  PAK+     + +Q+L    +
Sbjct: 204 HGVLQPVEYVIDPAVTAGRKYAIYDYELKTKLDKAVSVRAPAKVKRAQAERIQQLCETVY 263

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           + +G R + R D        ++++LEIN  P + P +     AA  G     +L  +++ 
Sbjct: 264 RELGIRDLGRIDLRL-GDDGELYFLEINALPSLEPGAGIYAAAALEGLHEDAVLGAVIQS 322

Query: 296 A 296
           A
Sbjct: 323 A 323


>gi|148269503|ref|YP_001243963.1| methyltransferase type 11 [Thermotoga petrophila RKU-1]
 gi|281411779|ref|YP_003345858.1| Methyltransferase type 11 [Thermotoga naphthophila RKU-10]
 gi|147735047|gb|ABQ46387.1| Methyltransferase type 11 [Thermotoga petrophila RKU-1]
 gi|281372882|gb|ADA66444.1| Methyltransferase type 11 [Thermotoga naphthophila RKU-10]
          Length = 637

 Score =  216 bits (550), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 71/297 (23%), Positives = 126/297 (42%), Gaps = 25/297 (8%)

Query: 24  SALEDA-GFKVSQIDVDRSVGLVLAHLK--PDLAFNVLHGNFGED----GLVQAILELLE 76
           +AL    G+  S +D   ++   L  LK   D  FN+    F  D      V A+LE+L 
Sbjct: 335 AALRSLKGYNFSYLDNHDTLITDLMKLKGKIDYVFNLCDEGFNNDPRKEAHVPALLEMLG 394

Query: 77  IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGG 136
           IPYT SG     L  DK   + +    G+PV  ++ +       +     P ++KP  G 
Sbjct: 395 IPYTGSGPQTLVLCYDKSLIRGIAREMGIPVPRAVFIKPEDTTFELPFPFPAIVKPNFGD 454

Query: 137 SSLGI---IVIKKDQSIPLDL-LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192
           SS GI    V+   + +   +    + + +   +L+E+++ G +L+ G++G+       +
Sbjct: 455 SSFGITQKSVVYTPEELINAVSEIRNKFGYDKPVLVEEFLTGKDLSVGIIGNPPDSYMVL 514

Query: 193 AVPKSDF----------YSYELKYSSLN---STHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
            + + D+            YE K+   +   +   +PA +P +  K +        + + 
Sbjct: 515 PIIEEDYSALPPELPRICGYEAKWLPDSPYWNIKSIPADLPEETEKFIIDCCLKLFERLE 574

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           CR   R D+  D        LE+N  PG        +MA  AG S+ E+L  +++ A
Sbjct: 575 CRDYCRFDWRLDAEGN-PKLLEVNPNPGWCWDGHLAKMAKIAGMSYAEMLGAILKAA 630


>gi|220916612|ref|YP_002491916.1| D-alanine--D-alanine ligase [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219954466|gb|ACL64850.1| D-alanine--D-alanine ligase [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 728

 Score =  215 bits (549), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 79/300 (26%), Positives = 145/300 (48%), Gaps = 15/300 (5%)

Query: 10  SEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGE--DGL 67
           +E + S  + +A   A+   G +V  ++  + + L L     D+ FN+  G  G   +  
Sbjct: 368 AEYD-SPKTLQAIREAIASWGHEVVDLEATQDLPLQLVSTPVDVVFNIAEGFKGRSRESQ 426

Query: 68  VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPP 127
           V ++LELL+IPYT S   A ++S+DK  +K++V + G+     +++N         ++ P
Sbjct: 427 VPSLLELLDIPYTGSDPAALSVSLDKALAKRMVRTHGILTPDYLVLNTGNERLPRELTFP 486

Query: 128 YVIKPLKGGSSLGIIV--IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD- 184
            ++KP+  G+S G+    + +D+    ++ +     +    L E YV G E T G++G+ 
Sbjct: 487 LIVKPVAEGTSKGVTRKSVVRDEPELREVARELIAKYRQPALAEGYVSGREFTVGLLGER 546

Query: 185 --ASLDVTEIAVPKSD----FYSYELKYSSLNS-THVLPAKIPLDIYKEVQRLAFLAHQA 237
               L   EI    +      YS+E+K        + +PAK+     + +++ A     A
Sbjct: 547 RPRVLPPMEIVFLDAKDPTPIYSFEMKQDWNERIRYEVPAKLTPRELERLEKAARECFTA 606

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP-VSIFPEMAAYAGYSFRELLLWMVEDA 296
           +GCR ++R DF  D   R + ++E N  PG+ P  S    +A  AG  +R L+  ++  A
Sbjct: 607 LGCRDVARLDFRMDAEGR-IHFIECNPLPGLAPGWSDLVLIAQAAGMDYRALIGEILSFA 665



 Score =  176 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 77/301 (25%), Positives = 128/301 (42%), Gaps = 22/301 (7%)

Query: 17  SSGKACASALEDAGFKVSQIDVDRSVGLV---LAHLKPDLAFNVLHGNFGE--DGLVQAI 71
            +  A A A+E  G +V +I+V          L    PDL FN   G  G   +    A+
Sbjct: 24  ETVDALAGAIERLGHRVERIEVSGPASRTVTRLEAFGPDLIFNTAEGRRGRFREAFFPAL 83

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIK 131
            + L +PYT S   A ++++DK  +K V++  GV       V        + +  P ++K
Sbjct: 84  FDELGMPYTGSDAYALSVTLDKQLTKLVLAQKGVRTPRWQYVEEPWQLQVNALRYPVIVK 143

Query: 132 PLKGGSSLGIIVIKKDQS--IPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD- 188
           P   GSS GI             +++Q     +   LL+E++V G +LT   +  A+ + 
Sbjct: 144 PNFEGSSKGITQDSVVDDPMRLHEVVQDGLARYPAGLLVEEFVVGRDLTVPFLEAAAPER 203

Query: 189 ---------VTEIAVP---KSDFYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAH 235
                    V + AV    K   Y YELK     +  V  PAK+     + +Q+L    +
Sbjct: 204 HGVLQPVEYVIDPAVTAGRKYAIYDYELKTKLDQAVSVRAPAKVKRAQAERIQQLCETVY 263

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           + +G R + R D        ++++LEIN  P + P +     AA  G     +L  +++ 
Sbjct: 264 RELGIRDLGRIDLRL-GDDGELYFLEINALPSLEPGAGIYAAAALEGLHEDAVLGAVIQS 322

Query: 296 A 296
           A
Sbjct: 323 A 323


>gi|39936587|ref|NP_948863.1| putative D-alanyl-D-alanine ligase A [Rhodopseudomonas palustris
           CGA009]
 gi|39650443|emb|CAE28966.1| putative D-alanyl-D-alanine ligase A [Rhodopseudomonas palustris
           CGA009]
          Length = 329

 Score =  215 bits (548), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 98/329 (29%), Positives = 145/329 (44%), Gaps = 45/329 (13%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR----SVGLVLAHLKP------- 51
           +L GG S ER VS++S +A  SAL DA       D DR    S   +LAH +P       
Sbjct: 5   ILFGGTSKERLVSVASAQALHSALPDADLWFWN-DDDRVHAVSAQALLAHARPFEEAFVP 63

Query: 52  ------------DLA-------FNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
                       D A          LHG   E+G +QA+ EL  +P+T SG  AS L+ D
Sbjct: 64  DGEDIGPLETALDRAAAEQRLLVLGLHGGVAENGELQAMCELRRVPFTGSGSAASHLAFD 123

Query: 93  KMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152
           K+ +K+  +  GV     I +       +       + KP   GSS G+  I   Q +  
Sbjct: 124 KVAAKRFAAIAGVRTVTGIALADAEAALEAHGR--LIAKPACDGSSYGLFFINAKQDLVA 181

Query: 153 DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA-----SLDVTEIAVPKSDFYSYELKYS 207
               + + ++    LIE +V G+E TCGV+        +L   EI VP    + Y  KY 
Sbjct: 182 VRHAAKTEDY----LIEPFVAGVEATCGVLEAEDGSLRALPPIEI-VPADGGFDYTAKYL 236

Query: 208 SLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPG 267
           + ++  + P +   +I   +   A  AH+ + CRG SRSDF+         +LE N  PG
Sbjct: 237 AKSTQEICPGRFAPEIASAIMDYAVRAHRVMSCRGYSRSDFIVGKDG--PIFLETNTLPG 294

Query: 268 MTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +T  S++P+     G  F + L   +  A
Sbjct: 295 LTKASLYPKALNALGIPFVDFLRGQIALA 323


>gi|229089127|ref|ZP_04220426.1| D-alanine--D-alanine ligase [Bacillus cereus Rock3-44]
 gi|228694192|gb|EEL47869.1| D-alanine--D-alanine ligase [Bacillus cereus Rock3-44]
          Length = 228

 Score =  215 bits (548), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 56/217 (25%), Positives = 105/217 (48%), Gaps = 14/217 (6%)

Query: 91  MDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSLGI 141
           MDK+  K + +  G+         R T +          + ++  P  +KP   GSS+GI
Sbjct: 1   MDKVVMKNIFAEAGLKQAKYASFIRSTWEKDRETAYEKVEEVLGYPCFVKPANLGSSVGI 60

Query: 142 IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--DVTEIAVPKSDF 199
              K  + +  D     ++    ++++E+ + G E+  GV+G+      V    VPK DF
Sbjct: 61  NKCKDREEL--DNAFEEAFQFDRKIIVEENIVGREVEVGVLGNDEPKCSVVGEIVPKKDF 118

Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
           Y Y+ KY   ++  ++PA++  +    ++R A +A Q++   G++R+DF       +V+ 
Sbjct: 119 YDYKSKYIDGDTALIIPAEMTEEESDVIKRDAIIAFQSLDSAGLTRADFFLTK-DGEVYI 177

Query: 260 LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            E+N  PG TP S+FP +  +    + EL+  ++  A
Sbjct: 178 NEVNTMPGFTPFSMFPLLWQHTNLPYPELIEELIRLA 214


>gi|146342495|ref|YP_001207543.1| D-alanine-D-alanine ligase, affects cell division [Bradyrhizobium
           sp. ORS278]
 gi|146195301|emb|CAL79326.1| D-alanine-D-alanine ligase, affects cell division [Bradyrhizobium
           sp. ORS278]
          Length = 329

 Score =  215 bits (548), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 92/328 (28%), Positives = 148/328 (45%), Gaps = 43/328 (13%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD---RSVGLVLAHLKP-------- 51
           +L GG + ER VS++S KA  +AL +A     + D      S   ++AH KP        
Sbjct: 5   ILFGGSNKERLVSVASAKALHAALPEADLWFWEADDTVQQASGPALVAHAKPFEEPFTAD 64

Query: 52  -----------------DLAFNV-LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDK 93
                            D    + LHG   E+G +Q + E+  +P+T S   AS L+ DK
Sbjct: 65  GVRIGTLAEALDRARAEDRILVLGLHGGRAENGELQVMCEMRGVPFTGSSSAASHLAFDK 124

Query: 94  MRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153
           + +K+     GV     + ++              + KP+K GSS G+I +   Q +   
Sbjct: 125 VAAKRFAVLGGVTAAEGVALDNAETALARYGK--LIAKPVKDGSSFGLIFVNAKQDLVAV 182

Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA-----SLDVTEIAVPKSDFYSYELKYSS 208
              +++  +    LIE +V G E TCGV+  A     +L   EI +P    ++Y  KY +
Sbjct: 183 KAAAATEEY----LIEPFVTGKEATCGVLEQADGSLIALPPIEI-LPADGAFNYFAKYLA 237

Query: 209 LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268
             +  + P +   ++   +QR A  AH+A+ C G SR+DF+       V+ LE N  PG+
Sbjct: 238 AATKEICPGRFNPEVTAALQREAIKAHRALSCGGYSRTDFIVSA-DGPVY-LETNTLPGL 295

Query: 269 TPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           T  S++P+  A  G  F + L   +  A
Sbjct: 296 TAASLYPKALAAQGIPFADFLQQQIALA 323


>gi|258593040|emb|CBE69351.1| putative D-alanine--D-alanine ligase A (D-alanylalanine synthetase
           A) (D-Ala-D-Ala ligase A) [NC10 bacterium 'Dutch
           sediment']
          Length = 436

 Score =  215 bits (548), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 88/269 (32%), Positives = 137/269 (50%), Gaps = 27/269 (10%)

Query: 48  HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV 107
           H   D+AF V+HG  GEDG +Q + EL  +PY  +G+ ASA+ MDK+ SK V    G+PV
Sbjct: 144 HPTIDVAFPVIHGTHGEDGTIQGLCELANLPYVGAGVAASAVGMDKIISKLVFQGAGLPV 203

Query: 108 CPSILVNRFTM---------DSQHLISPPYVIKPLKGGSSLGIIVIKKD-QSIPLDLLQS 157
              I V R  +           + ++S P V+KP   GSS+GI V     +++ L     
Sbjct: 204 VEGIGVTRRELLEDEAAVVQALERILSYPVVVKPAVAGSSVGIGVAHDAVEALSLA---K 260

Query: 158 SSWNHGDQLLIEQYVDGI-ELTCGVMGDASLDVTEIA--VPKSDFYSYELKYSSLN---- 210
            +     ++L+E+ V    E+ CGV+G+ +L V+E    +   +   Y  KY        
Sbjct: 261 RAMRFSCRVLVERAVQQRIEVQCGVIGNHALTVSECEELISSGEVVGYRDKYPENKKPGS 320

Query: 211 ---STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPG 267
              +  ++PA+IP  +  E++ +A  A ++I  RGISR DFL D  + K +  EIN  PG
Sbjct: 321 ADLAPSIIPARIPQALSDEIRSIAAAAFKSIDSRGISRVDFLVDSAAMKPYVNEINTMPG 380

Query: 268 MTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
               S+   +   +G    EL++ +VE A
Sbjct: 381 ----SLSLTLWERSGVKPAELIVRLVELA 405



 Score = 37.4 bits (86), Expect = 2.3,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 20/55 (36%), Gaps = 2/55 (3%)

Query: 1  MAVLMGGISSEREVSLSSGKACASALEDA--GFKVSQIDVDRSVGLVLAHLKPDL 53
          + ++ G  S EREVS+ +       L      F+   I +      +      DL
Sbjct: 8  IGLIFGSRSVEREVSIMTAGKVYEVLLSLQDRFETLPIFLTAEGTWLTGEAVRDL 62


>gi|86158871|ref|YP_465656.1| D-alanine--D-alanine ligase [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85775382|gb|ABC82219.1| D-alanine--D-alanine ligase [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 727

 Score =  215 bits (548), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 80/300 (26%), Positives = 145/300 (48%), Gaps = 15/300 (5%)

Query: 10  SEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGE--DGL 67
           +E + S  + +A   A+   G +V  ++  + + L LA    D+ FN+  G  G   +  
Sbjct: 368 AEYD-SPKTLQAIREAIASWGHEVVDLEATQDLPLQLASTPVDVVFNIAEGFKGRSRESQ 426

Query: 68  VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPP 127
           V ++LELL+IPYT S   A ++S+DK  +K++V + G+     +++N         ++ P
Sbjct: 427 VPSLLELLDIPYTGSDPSALSVSLDKALAKRMVRTHGILTPDYLVLNTGNERLPRELTFP 486

Query: 128 YVIKPLKGGSSLGIIV--IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD- 184
            ++KP+  G+S G+    + +D+    ++ +     +    L E YV G E T G++G+ 
Sbjct: 487 LIVKPVAEGTSKGVTRKSVVRDELELREVARELIAKYRQPALAEGYVSGREFTVGLLGER 546

Query: 185 --ASLDVTEIAVPKSD----FYSYELKYSS-LNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
               L   EI    +      YS+E+K        + +PAK+       +++ A     A
Sbjct: 547 RPRVLPPMEIVFLDAKDPTPIYSFEMKQDWSERIRYEVPAKLSPRELDRLEKAARECFTA 606

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP-VSIFPEMAAYAGYSFRELLLWMVEDA 296
           +GCR ++R DF  D   R + ++E N  PG+ P  S    +A  AG  +R L+  ++  A
Sbjct: 607 LGCRDVARLDFRMDAEGR-IHFIECNPLPGLAPGWSDLVLIAQAAGMDYRGLIGEILSFA 665



 Score =  178 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 77/301 (25%), Positives = 126/301 (41%), Gaps = 22/301 (7%)

Query: 17  SSGKACASALEDAGFKVSQIDVDRSVGLV---LAHLKPDLAFNVLHGNFGE--DGLVQAI 71
            +  A A A+E  G +V +I+V          L    PDL FN   G  G   +    A+
Sbjct: 24  ETVDALAGAIERLGHRVERIEVSGPASRTVTRLEAFGPDLIFNTAEGRRGRFREAFFPAL 83

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIK 131
            + L +PYT S   A A+++DK  +K V++  GV       V        + +  P ++K
Sbjct: 84  FDELGMPYTGSDAYALAVTLDKQLTKLVLAQKGVRTPRWQYVEEPWQLQVNALRYPVIVK 143

Query: 132 PLKGGSSLGIIVIKKDQS--IPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS--- 186
           P   GSS GI             +++Q     +   LL+E++V G +LT   +  A+   
Sbjct: 144 PNFEGSSKGITQDSVVDDPVRLHEVVQDGLARYPAGLLVEEFVVGRDLTVPFLEAAAPDR 203

Query: 187 ---LDVTEIAVP-------KSDFYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAH 235
              L   E  +        K   Y YELK     +  V  PAK+     + +Q+L    +
Sbjct: 204 HGVLQPVEYVIDPAVTAGRKYAIYDYELKTKLDKAVSVRAPAKVKRAQAERIQQLCETVY 263

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           + +G R + R D        ++++LEIN  P + P +     AA  G     +L  +++ 
Sbjct: 264 RELGIRDLGRIDLRL-GDDGELYFLEINALPSLEPGAGIYAAAALEGLHEDAVLGAVIQS 322

Query: 296 A 296
           A
Sbjct: 323 A 323


>gi|291533191|emb|CBL06304.1| D-alanine--D-alanine ligase [Megamonas hypermegale ART12/1]
          Length = 232

 Score =  214 bits (547), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 68/232 (29%), Positives = 122/232 (52%), Gaps = 13/232 (5%)

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPP 127
           ++++PYT   +L+SA++MDK+ SK +  S G+     ++  +   D           S P
Sbjct: 1   MIDMPYTSCSVLSSAITMDKVASKHLFRSTGISTPNCLIYRKTDTDRNLVEEIAGKFSMP 60

Query: 128 YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA-- 185
            V+K    GSS+G+ +++K + +   +   + + + D +L+E+++ G EL+  V G+   
Sbjct: 61  VVVKAASQGSSIGVEIVEKKEDLQKAI--DACFEYDDAILVEEFIKGRELSIPVYGNKEK 118

Query: 186 -SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244
            +L + EI    S  Y Y+ KY+   S H++PA +  ++  ++Q+L   A     CRG+ 
Sbjct: 119 KALPIIEITT-NSGRYDYKSKYTKGESFHIIPAPLSEELTAKIQKLCIDACTVADCRGVV 177

Query: 245 RSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           R D +        + LEIN  PGMT  S+ P+ A + G SF EL   +++ A
Sbjct: 178 RVDVMLSE-ENIPYVLEINSVPGMTQTSLVPDAANHVGISFGELCEMILQMA 228


>gi|148257414|ref|YP_001241999.1| D-alanine--D-alanine ligase [Bradyrhizobium sp. BTAi1]
 gi|146409587|gb|ABQ38093.1| D-alanine--D-alanine ligase [Bradyrhizobium sp. BTAi1]
          Length = 329

 Score =  214 bits (547), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 94/328 (28%), Positives = 150/328 (45%), Gaps = 43/328 (13%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQID--VDRSVGLVL-AHLKP-------- 51
           +L GG + ER VS++S +A  + L D+     + D  V R  G  L AH +P        
Sbjct: 5   ILFGGSNKERLVSVASAQALHATLPDSDLWFWEADDAVHRVSGKALVAHARPFEEPFTAD 64

Query: 52  -----------------DLAF-NVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDK 93
                            D      LHG   E+G +Q + E+  +P+T S   AS L+ DK
Sbjct: 65  GPRIGTLADALDRAKAEDRVLVLALHGGRAENGELQVMCEMRGVPFTGSSSAASHLAFDK 124

Query: 94  MRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153
           + +K+     GV V   + +     ++        + KP+K GSS G+I +   Q +   
Sbjct: 125 VAAKRFAVLGGVTVAEGVSL--ADAEAALAQHGRLIAKPVKDGSSFGLIFVNAKQDLVAV 182

Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA-----SLDVTEIAVPKSDFYSYELKYSS 208
              +++  +    LIE +V G E TCGV+        +L   EI +P    ++Y  KY +
Sbjct: 183 RAAAATEEY----LIEPFVTGTEATCGVLEQPDGSLIALPPIEI-LPADGAFNYFAKYLA 237

Query: 209 LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268
             +  + P +   +I   +Q  A  AH+A+ C G SRSDF+    +  V+ LE N  PG+
Sbjct: 238 TATKEICPGRFTPEITAALQTEAIKAHRALSCGGYSRSDFIVSA-NGPVY-LETNTLPGL 295

Query: 269 TPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           T  S++P+  A    SFR+ L   ++ A
Sbjct: 296 TAASLYPKALAAQNISFRDFLQQQIDLA 323


>gi|108757010|ref|YP_632275.1| D-alanine-D-alanine ligase family protein [Myxococcus xanthus DK
           1622]
 gi|108460890|gb|ABF86075.1| D-alanine-D-alanine ligase family protein [Myxococcus xanthus DK
           1622]
          Length = 729

 Score =  214 bits (547), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 81/302 (26%), Positives = 149/302 (49%), Gaps = 18/302 (5%)

Query: 10  SEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDG--L 67
           +E + S ++ +A   A+   G +V  ++    +  VL+    D+ FN+  G  G +    
Sbjct: 371 AEYD-SPNTLQAIREAIASWGHEVIDLEATAELPSVLSSTPLDVVFNIAEGFKGRNRESQ 429

Query: 68  VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV-NRFTMDSQHLISP 126
           V A+LELL+IPYT S     ++++DK  +K++V   G+      L+       ++   S 
Sbjct: 430 VPALLELLDIPYTGSDPATLSIALDKGLAKKIVRQAGILTPNFQLMATGKERLNKEFTSF 489

Query: 127 PYVIKPLKGGSSLGI---IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           P ++KP+  GSS G+    V   +  +  ++++  +  +    LIE+Y+ G E T G++G
Sbjct: 490 PLIVKPVAEGSSKGVVTKSVCHSEAELR-EVVREIAGKYQQPALIEEYIRGREFTVGLLG 548

Query: 184 DA---SLDVTEIA----VPKSDFYSYELKYSSLNS-THVLPAKIPLDIYKEVQRLAFLAH 235
           +     L   EI       K+  YS++ K    +   +  PAK+   + + ++  A  + 
Sbjct: 549 ERRPRVLPPMEIVFLDREEKNPVYSFQHKLDWTDRIRYDAPAKLEPALLERLRTAARNSF 608

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP-VSIFPEMAAYAGYSFRELLLWMVE 294
            A+GCR ++R DF  D   R ++++E N  PG+TP  S    +A  AG  +R L+  ++ 
Sbjct: 609 MALGCRDVARIDFRMDDKGR-IYFIECNPLPGLTPGWSDLVLIAQGAGMDYRGLIGEIMA 667

Query: 295 DA 296
            A
Sbjct: 668 PA 669



 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 75/302 (24%), Positives = 131/302 (43%), Gaps = 22/302 (7%)

Query: 17  SSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---PDLAFNVLHGNFGE--DGLVQAI 71
            +  A A+A+E  G ++ + +V       +A L+   PDL FN   G  G   +    A+
Sbjct: 24  ETVNALAAAIERIGHRLERFEVSGPASRTVARLEAYSPDLIFNTAEGRRGRFREAFYPAL 83

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIK 131
            + L  PYT S   A A+++DK  +K V+S  G+       V + +  S   +  P ++K
Sbjct: 84  FDELGFPYTGSDAYALAVTLDKQLTKLVLSKQGIRTPGWQYVEKLSELSAENLRFPVIVK 143

Query: 132 PLKGGSSLGIIVIKKDQSIPL--DLLQSSSWNHGDQLLIEQYVDGIELTCGVMG------ 183
           P   GSS GI      +++      + ++   +   +L+E+Y+ G +L    +       
Sbjct: 144 PNFEGSSKGISQDSIAETLDEVRAKVAAALEKYPSGVLVEEYISGRDLAVPFLESVDNDY 203

Query: 184 DASLDVTEIAVP-------KSDFYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAH 235
           D  L   E  +        K   Y Y LK S   +  V  PA+IP    ++V+R+A   +
Sbjct: 204 DGVLSPVEYVIDPAVTQGRKYAIYDYALKTSREGTVSVRAPAQIPPRTAEDVRRMAQKVY 263

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           +A+ CR + R D          ++LEIN  P + P +     A   G     ++  ++  
Sbjct: 264 RALDCRDLGRIDVRLSDA-GVPYFLEINALPSLEPGAGIYAAAELDGLHLDGVINSIITS 322

Query: 296 AS 297
           A+
Sbjct: 323 AA 324


>gi|289432514|ref|YP_003462387.1| D-alanine--D-alanine ligase [Dehalococcoides sp. GT]
 gi|288946234|gb|ADC73931.1| D-alanine--D-alanine ligase [Dehalococcoides sp. GT]
          Length = 338

 Score =  214 bits (545), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 80/305 (26%), Positives = 139/305 (45%), Gaps = 18/305 (5%)

Query: 11  EREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGL 67
           E + S  + +A  +AL  AG  V ++   +     +   K DL FN+  G       +  
Sbjct: 26  EYD-SPETVEAITNALTAAGHAVYRLGGGKEFLRKVQEHKLDLVFNISEGLGNYRSREAQ 84

Query: 68  VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---DSQHLI 124
           +  +LE+L+IPYT S     A+ +DK  +K++V+  GV      LV+             
Sbjct: 85  IPGVLEMLDIPYTGSDPQTLAICLDKPLTKKLVAGAGVKTAKWQLVSNCEELSTIDWSDF 144

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQ--SIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
             P  +KP   GSS G+    + +     + +       +   +L+E++++G E+T GV+
Sbjct: 145 PLPAFLKPACEGSSKGVRFASRAESTDEIMRMATELLTTYNQPVLVEEFINGDEITVGVI 204

Query: 183 GDASLDVTEI--AVPKSDF----YSYELKYSSLN-STHVLPAKIPLDIYKEVQRLAFLAH 235
           G+    V  I   VPK+      YS E+K +      + +PA +P      +++    A+
Sbjct: 205 GNDKPKVLGIMRIVPKTKADYFVYSIEIKRNWRQMVEYEVPAALPAKTLAHIEKATLDAY 264

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-IFPEMAAYAGYSFRELLLWMVE 294
           + + C  + R DF   P     ++LE+N  PG+ PVS   P MA+  G S  +L+L ++ 
Sbjct: 265 RVLECHDLCRMDFRVSP-DGTPYFLEVNPLPGLNPVSGDLPIMASKLGISHADLVLEILN 323

Query: 295 DASCL 299
            A   
Sbjct: 324 TAIAR 328


>gi|268323535|emb|CBH37123.1| putative D-alanine--D-alanine ligase [uncultured archaeon]
 gi|268323656|emb|CBH37244.1| putative D-alanine--D-alanine ligase [uncultured archaeon]
          Length = 339

 Score =  214 bits (545), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 75/297 (25%), Positives = 137/297 (46%), Gaps = 25/297 (8%)

Query: 22  CASALEDAGFKVSQIDVDRSVGLVLAHLK--PDLAFNVLHGNFGE--DGLVQAILELLEI 77
              AL   G +V  I+ D      L   +   D+ FN+  G  GE  +  + AI ++LEI
Sbjct: 35  VREALMADGNEVILIEADGDAYGKLKEERRDIDIVFNIAEGLRGESRESYIPAICDMLEI 94

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKG 135
           PYT SG+L   L ++K+R+K+++   G+P     L       +D +  +  P ++K L  
Sbjct: 95  PYTGSGVLTLGLCLNKVRTKEILRYYGIPTPDFWLFRSKNEKLDLELELKFPLIVKLLHE 154

Query: 136 GSSLGII---VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192
           GS +G+    ++  ++ +  D +      +G+ +++E+++DG E T G++G+    +  I
Sbjct: 155 GSQMGLSSDSIVCSEEDLR-DRVAYLMHEYGEPVIVEEFLDGREFTVGILGNEKPIILPI 213

Query: 193 A-------------VPKSDFYSYELKYSSLNSTH--VLPAKIPLDIYKEVQRLAFLAHQA 237
                          P      +  K  ++N     V PA +  D+  E++ +A  A++A
Sbjct: 214 VEALFEEGQKMRLFTPDKPLLPFIPKGVAINLKERSVCPADVDEDLRSEIEEIALNAYRA 273

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           + CR   R D            LE+N   G+ P  + P  A  AG S++ L+  ++E
Sbjct: 274 LDCRDWCRIDLRMTRDGDIPNVLELNPIAGIDPSYLLPRAAKAAGISYKRLINMILE 330


>gi|73748467|ref|YP_307706.1| D-ala D-alanine ligase [Dehalococcoides sp. CBDB1]
 gi|73660183|emb|CAI82790.1| D-ala D-alanine ligase [Dehalococcoides sp. CBDB1]
          Length = 338

 Score =  213 bits (544), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 79/305 (25%), Positives = 139/305 (45%), Gaps = 18/305 (5%)

Query: 11  EREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGL 67
           E + S  + +A  ++L  AG  V ++   +     +   K DL FN+  G       +  
Sbjct: 26  EYD-SPETVEAITNSLTAAGHAVYRLGGGKEFLRKVQEQKLDLVFNISEGLGNYRSREAQ 84

Query: 68  VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---DSQHLI 124
           +  +LE+L+IPYT S     A+ +DK  +K++V+  GV      LV+             
Sbjct: 85  IPGVLEMLDIPYTGSDPQTLAICLDKPLTKKLVAGAGVKTAKWQLVSNCEELSTIDWSDF 144

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQ--SIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
             P  +KP   GSS G+    + +     + +       +   +L+E++++G E+T GV+
Sbjct: 145 PLPAFLKPACEGSSKGVRFASRAESTDEIMRMATELLTTYNQPVLVEEFINGDEITVGVI 204

Query: 183 GDASLDVTEI--AVPKSDF----YSYELKYSSLN-STHVLPAKIPLDIYKEVQRLAFLAH 235
           G+    V  I   VPK+      YS E+K +      + +PA +P      +++    A+
Sbjct: 205 GNDKPKVLGIMRIVPKTKADYFVYSIEIKRNWRQMVEYEVPAALPAKTLARIEKATLDAY 264

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-IFPEMAAYAGYSFRELLLWMVE 294
           + + C  + R DF   P     ++LE+N  PG+ PVS   P MA+  G S  +L+L ++ 
Sbjct: 265 RVLECHDLCRMDFRVSP-DGTPYFLEVNPLPGLNPVSGDLPIMASKLGISHADLVLEILN 323

Query: 295 DASCL 299
            A   
Sbjct: 324 TAIAR 328


>gi|192292409|ref|YP_001993014.1| D-alanine--D-alanine ligase [Rhodopseudomonas palustris TIE-1]
 gi|192286158|gb|ACF02539.1| D-alanine--D-alanine ligase [Rhodopseudomonas palustris TIE-1]
          Length = 329

 Score =  213 bits (543), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 97/328 (29%), Positives = 143/328 (43%), Gaps = 43/328 (13%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---DRSVGLVLAHLKP-------- 51
           +L GG S ER VS++S +A  SAL DA       D      S   +LAH +P        
Sbjct: 5   ILFGGTSKERLVSVASAQALHSALPDADLWFWNDDDCVHAVSAQALLAHARPFEEAFVPD 64

Query: 52  -----------DLA-------FNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDK 93
                      D A          LHG   E+G +QA+ EL  +P+T SG  AS L+ DK
Sbjct: 65  GEDIGPLETALDRAAAEQRLLVLGLHGGVAENGELQAMCELRRVPFTGSGSAASHLAFDK 124

Query: 94  MRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153
           + +K+  S  GV     I +       +       + KP   GSS G+  I   Q +   
Sbjct: 125 VAAKRFASIAGVRTVTGIALADAEAALEAHGR--LIAKPACDGSSYGLFFINAKQDLVAV 182

Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA-----SLDVTEIAVPKSDFYSYELKYSS 208
              + + ++    LIE +V G+E TCGV+        +L   EI VP    + Y  KY +
Sbjct: 183 RHAAKTEDY----LIEPFVAGVEATCGVLEAEDGSLRALPPIEI-VPADGGFDYTAKYLA 237

Query: 209 LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268
            ++  + P +   +I   +   A  AH+ + CRG SRSDF+         +LE N  PG+
Sbjct: 238 KSTQEICPGRFAPEIASAIMDYAVRAHRVMSCRGYSRSDFIVGKDG--PIFLETNTLPGL 295

Query: 269 TPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           T  S++P+     G  F + L   +  A
Sbjct: 296 TKASLYPKALNALGIPFVDFLRGQIALA 323


>gi|315498872|ref|YP_004087676.1| d-alanine--d-alanine ligase [Asticcacaulis excentricus CB 48]
 gi|315416884|gb|ADU13525.1| D-alanine--D-alanine ligase [Asticcacaulis excentricus CB 48]
          Length = 329

 Score =  213 bits (542), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 93/328 (28%), Positives = 142/328 (43%), Gaps = 43/328 (13%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD---RSVGLVLAHLKP-------- 51
           +L GG+S ER V++++ ++   AL +        D      S   +L H +P        
Sbjct: 5   LLFGGLSRERLVAVATTQSLHKALPEGDLWFWDEDNHVYEASSLALLGHQRPFEVPFRAD 64

Query: 52  -----------------DLAFNV-LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDK 93
                            D    + LHG   E+G  Q   E   +P+T SG  AS L+ DK
Sbjct: 65  GHDLGTIDQALDRAAAEDRVLVLGLHGGIAENGEFQVKCEARGVPFTGSGSAASHLAFDK 124

Query: 94  MRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153
           + +K+  +  GV     I +    +D+        V KP + GSS G+I +     +   
Sbjct: 125 VSAKRFAACAGVSSPAGIAL--SELDAAFAEYGKLVAKPAQDGSSFGLIFVNSTNDLVAV 182

Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA-----SLDVTEIAVPKSDFYSYELKYSS 208
              +         LIE +V G E TC V+        +L   EI +P    + Y  KY S
Sbjct: 183 RDAAK----EQPYLIEPFVTGAEATCAVLEQTDGSLIALPPIEI-IPDRGAFDYHSKYLS 237

Query: 209 LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268
             +  + PA+   ++  E+QRLA  AH+A+ CRG +RSDF+         ++E N  PGM
Sbjct: 238 NKTQEICPARFAPEVIAEIQRLAIAAHKALSCRGYTRSDFIVSDKG--PVFIETNTLPGM 295

Query: 269 TPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           T  S++P+  A  G  F E L   V+ A
Sbjct: 296 TASSLYPKALAAQGIGFVEFLHGQVDIA 323


>gi|147669247|ref|YP_001214065.1| D-alanine--D-alanine ligase [Dehalococcoides sp. BAV1]
 gi|146270195|gb|ABQ17187.1| D-alanine--D-alanine ligase [Dehalococcoides sp. BAV1]
          Length = 338

 Score =  213 bits (542), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 80/305 (26%), Positives = 138/305 (45%), Gaps = 18/305 (5%)

Query: 11  EREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGL 67
           E + S  + +A  +AL  AG  V ++   +     +   K DL FN+  G       +  
Sbjct: 26  EYD-SPETVEAITNALTAAGHAVYRLGGGKEFLRKVQEQKLDLVFNISEGLGNYRSREAQ 84

Query: 68  VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---DSQHLI 124
           +  +LE+L+IPYT S     A+ +DK  +K++V+  GV      LV+             
Sbjct: 85  IPGVLEMLDIPYTGSDPQTLAICLDKPLTKKLVAGAGVKTAKWQLVSNCEELSTIDWSDF 144

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQ--SIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
             P  +KP   GSS G+    + +     + +       +   +L+E++++G E+T GV+
Sbjct: 145 PLPAFLKPACEGSSKGVRFASRAESTDEIMRMATELLTTYNQPVLVEEFINGDEITVGVI 204

Query: 183 GDASLDVTEI--AVPKSDF----YSYELKYSSLN-STHVLPAKIPLDIYKEVQRLAFLAH 235
           G+    V  I   VPK+      YS E+K +      + +PA +P      +++    A+
Sbjct: 205 GNDKPKVLGIMRIVPKTKADYFVYSIEIKRNWRQMVEYEVPAALPAKTLARIEKATLDAY 264

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-IFPEMAAYAGYSFRELLLWMVE 294
           + + C  + R DF   P     ++LE+N  PG+ PVS   P MA+  G S  +L L ++ 
Sbjct: 265 RVLECHDLCRMDFRVSP-DGTPYFLEVNPLPGLNPVSGDLPIMASKLGISHADLALEILN 323

Query: 295 DASCL 299
            A   
Sbjct: 324 TAIAR 328


>gi|152991773|ref|YP_001357494.1| D-alanyl-alanine synthetase A [Sulfurovum sp. NBC37-1]
 gi|189083062|sp|A6Q6M8|DDL_SULNB RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|151423634|dbj|BAF71137.1| D-alanine-D-alanine ligase [Sulfurovum sp. NBC37-1]
          Length = 346

 Score =  212 bits (541), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 76/331 (22%), Positives = 138/331 (41%), Gaps = 53/331 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           +A+L GG S E E+S+ S       L+ +      +  DR   L+               
Sbjct: 3   IAILFGGSSFEHEISIVSAITMKKVLKKSTLTYIFVSADRKFYLIDTEKINSKLFSSGEY 62

Query: 47  ---------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
                                  +  D+  N++HG  GEDG V +++E   IPY    + 
Sbjct: 63  KKGKQLVLKNDGFFTKGMFGSKQVAFDVLLNLIHGRDGEDGKVASMMEFFNIPYISPRLE 122

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145
           ASA+S +K+ +K +  S GV   P   +++   D +  +  P +IKP++ GSS+G+ ++K
Sbjct: 123 ASAMSYNKLYTKFLAESLGVKTVPYEHLSK-NGDRKISMEYPVIIKPVRLGSSIGVSIVK 181

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL---TCGVMGDASLDVTEIAVPKSDFYSY 202
            +  +  D     ++   + +++E ++DG++         GD  L + E    K +F  +
Sbjct: 182 SEAEL--DYALDVAFEFDNDVIVEPFIDGVKEFNQAGCHTGDWELSIVE-EPQKEEFLDF 238

Query: 203 ELKYSSLNST-HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
           E KY   +    VL A I  ++   +Q      +  +    I R DF    ++ ++   E
Sbjct: 239 EKKYMDFSRDSQVLSADISEELKNNIQVTFKKIYDPLFMGSIIRCDFFV--VNDEILLNE 296

Query: 262 INVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           IN  PG     +FP         F  ++  +
Sbjct: 297 INPIPGSMANYLFP--------DFEGMVWRL 319


>gi|256786060|ref|ZP_05524491.1| D-alanine--D-alanine ligase B [Streptomyces lividans TK24]
          Length = 364

 Score =  212 bits (541), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 83/312 (26%), Positives = 148/312 (47%), Gaps = 20/312 (6%)

Query: 1   MAVLMGGISSER-------EVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDL 53
           +A++ G +S+E         V   S  A A ALE+ G +   ++       ++  ++ D+
Sbjct: 32  VALVNGPVSAEDRLYHSKCPVEQRSVTALAEALEEIGARWKVLNPCEPD-FIMELVEYDV 90

Query: 54  AFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
           A + LHG +GEDG +Q +L+ L +PY  SG+ ASA++ DK+  K+V+ + GVP     + 
Sbjct: 91  ALSNLHGPYGEDGRLQGLLDYLRVPYCGSGVGASAVAADKILCKRVMLTLGVPTPGWHV- 149

Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
             ++           ++KP  GGSS+G+ +++    +P  L  + + +    +LIE+YV 
Sbjct: 150 --WSGGPVAWYGRTIMVKPPFGGSSVGMSLVRDPADLPGALADA-AGDGCAPVLIEEYVT 206

Query: 174 GIELTCGVMG-----DASLDVTEIAVPKSDFYSYELKYSSL--NSTHVLPAKIPLDIYKE 226
           G  +T G++                  ++DFY  + K       +  V  A +      +
Sbjct: 207 GTPMTVGLLELPGGSAVVFPPLTTEATEADFYDADTKLDVDLRGAVTVRAANLAPAALDK 266

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           +   A      +G RG +R DF+      + + LE+N  PGM+  S F   AA  G +  
Sbjct: 267 ITAHARTLWNGLGLRGSARIDFILTE-DNEPYVLEVNTTPGMSRDSNFAVGAAMVGLTHT 325

Query: 287 ELLLWMVEDASC 298
           E++L M+ +A  
Sbjct: 326 EVVLAMLHEALA 337


>gi|162449160|ref|YP_001611527.1| D-alanine-D-alanine ligase / aminopeptidase [Sorangium cellulosum
           'So ce 56']
 gi|161159742|emb|CAN91047.1| D-alanine-D-alanine ligase / aminopeptidase [Sorangium cellulosum
           'So ce 56']
          Length = 1185

 Score =  212 bits (541), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 79/298 (26%), Positives = 135/298 (45%), Gaps = 16/298 (5%)

Query: 15  SLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG--NFGEDGLVQAIL 72
           S  + +A  SA+E  G  V  ++    +   LA    D+ FN+  G    G +  V A+ 
Sbjct: 395 SPRTIQAITSAIESYGHTVVPLEATPDLPRALAASGVDVVFNIAEGLRGRGREAQVPALC 454

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKP 132
           ELL IPY+ S     +L++DK  +KQ++ + G+      +V     +       P ++KP
Sbjct: 455 ELLGIPYSGSDATTLSLALDKGLTKQILRAAGIETAEWQVVTTG-REKLKPFRYPVIVKP 513

Query: 133 LKGGSSLGIIVIK--KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA----- 185
              G+S GI      KD++      +     +    LIE+Y+ G E T G++G+      
Sbjct: 514 NAEGTSKGITSASVVKDEAAARAAAKQLVDRYHQPALIEEYITGREFTVGLLGERRPKVL 573

Query: 186 -SLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
             ++V  +  P    Y Y+ K S         PA++     + V+++      A+ CR +
Sbjct: 574 PPMEVVFVDPPAYPVYGYDEKQSDTPRVRFECPAQLTPSELRRVEKVVRDTFAALACRDV 633

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTP-VSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           +R D        +V+ +EIN  PG+TP  S    +A  AG  +R L+  ++  A CL+
Sbjct: 634 ARVDLRM-AKDGRVYVIEINPLPGLTPDFSDLCVIAKVAGMDYRMLIGEIL--AGCLK 688



 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 84/317 (26%), Positives = 140/317 (44%), Gaps = 37/317 (11%)

Query: 20  KACASALEDAGFKVSQIDVDRSVGLVLA---HLKPDLAFNVLHGNFG--EDGLVQAILEL 74
            A A ALE AG +V +I+V      VLA    L+PDL FN   G+ G   +    ++ + 
Sbjct: 27  AAIAGALERAGHEVERIEVSGPASRVLARLEALQPDLIFNTAEGHKGKTREAFYPSLFDE 86

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL--ISPPYVIKP 132
           L IPYT S      +++DK  +K+V++S GV    + LVNR T+DS  L  +S P ++KP
Sbjct: 87  LGIPYTGSDAYTLNVALDKSLTKRVLASYGVATPRARLVNRTTLDSGALDDVSFPVIVKP 146

Query: 133 LKGGSSLGIIV---IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD----- 184
              GSS GI     + +D     ++++         LL+E Y+ GI++ C  +       
Sbjct: 147 NFEGSSKGIFREWSVCEDAHHLAEVVERQLARFEAGLLVEHYIAGIDVACAFVDGLKEAN 206

Query: 185 -----------ASLDVTEIAVP-----KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
                        L   E  +        + Y + LK++        PA++P    + ++
Sbjct: 207 GARSSGTGIPEGVLTPIEFVIDPQVPGSYNVYDFNLKHAKPEQVTRRPAQLPAATIERIR 266

Query: 229 RLAFLAHQAIGCRGISRSDFLFDP-----LSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283
            +     +A+  +  +R +F   P         V +LE++  P + P +     AA  G 
Sbjct: 267 AITARVVRALDLKDHARCEFRVTPSASRSQGHDVHFLEVDGLPTLQPGASVFVAAAQRGV 326

Query: 284 SFRELLLWMVEDASCLR 300
            F  ++  +V  A C R
Sbjct: 327 DFDGVIRAIVRSA-CKR 342


>gi|261839442|gb|ACX99207.1| D-alanyl-alanine synthetase A [Helicobacter pylori 52]
          Length = 347

 Score =  212 bits (541), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 71/314 (22%), Positives = 128/314 (40%), Gaps = 47/314 (14%)

Query: 3   VLMGGISSEREVSLSSGKACASALED---------AGFKVSQIDVD-------------- 39
           VL GG S E E+S+ S  A   AL+D                I+                
Sbjct: 5   VLFGGASFEHEISIVSAIALKEALKDRIKYFIFLDENHHFYLIEESNMHSKYFAQIKEKK 64

Query: 40  ------------RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87
                       ++  L    ++  L  N++HG  GEDG + ++LE   I +    I AS
Sbjct: 65  LPPLILTRNGLLKNSFLGAKIIELPLVINLVHGGDGEDGKLASLLEFYRIAFIGPRIEAS 124

Query: 88  ALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI---SPPYVIKPLKGGSSLGIIVI 144
            LS +K  +K      GV     +L+N     +   +   + P+++KP   GSSLG+ V+
Sbjct: 125 VLSYNKYLTKLYAKDLGVKTLDYVLLNEKNRANALNLIGFNFPFIVKPSNAGSSLGVSVV 184

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE----LTCGVMGDASLDVTEIAVPKSDFY 200
           K+++ +   L   S++ +  ++LIE ++ G++      C +  D      E    K +F 
Sbjct: 185 KEEKELIYAL--DSAFEYSKEILIEPFIQGVKEYNLAGCKIKKDFCFSYIE-EPNKQEFL 241

Query: 201 SYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260
            ++ KY   +      A +   + ++++      +  +    + R DF    +  +V+  
Sbjct: 242 DFKQKYLDFSRNKAPKANLSNALEEQLKENFKKLYNDLFDGALIRCDFFV--IENEVYLN 299

Query: 261 EINVQPGMTPVSIF 274
           EIN  PG     +F
Sbjct: 300 EINPIPGSLANYLF 313


>gi|210134940|ref|YP_002301379.1| D-alanyl-alanine synthetase A [Helicobacter pylori P12]
 gi|226696388|sp|B6JLX1|DDL_HELP2 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|210132908|gb|ACJ07899.1| D-alanine:D-alanine ligase A [Helicobacter pylori P12]
          Length = 347

 Score =  211 bits (539), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 75/314 (23%), Positives = 129/314 (41%), Gaps = 47/314 (14%)

Query: 3   VLMGGISSEREVSLSSGKACASALED---------AGFKVSQIDV-------------DR 40
           VL GG S E E+S+ S  A    L+D                I+               +
Sbjct: 5   VLFGGASFEHEISIVSAIALKEVLKDRIKHFIFLDENHHFYLIEASNMHSKYFAQIKEKK 64

Query: 41  SVGLVLAH-------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87
              L+LAH             ++  L  N++HG  GEDG + ++LE   I +    I AS
Sbjct: 65  LPPLILAHNGLLKNSFLGTKIIELPLVINLVHGGDGEDGKLASLLEFYRIAFIGPRIEAS 124

Query: 88  ALSMDKMRSKQVVSSCGVPVCPSILV---NRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
            LS +K  +K      GV     +L+   NR         + P+++KP   GSSLG+ V+
Sbjct: 125 VLSYNKYLTKLYAKDLGVKTLDYVLLNEKNRANALDLIKFNFPFIVKPSNAGSSLGVNVV 184

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE----LTCGVMGDASLDVTEIAVPKSDFY 200
           K+++ +   L   S++ +  ++LIE ++ G++      C +  D      E    K +F 
Sbjct: 185 KEEKELVYAL--DSAFEYSKEVLIEPFIQGVKEYNLAGCKIKTDFCFSYIE-EPNKQEFL 241

Query: 201 SYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260
            ++ KY   +      A +   + ++++      +  +    I R DF    +  +V+  
Sbjct: 242 DFKQKYLDFSRNKAPKANLSNALEEQLKENFKKLYNDLFSGAIIRCDFFV--IENEVYLN 299

Query: 261 EINVQPGMTPVSIF 274
           EIN  PG     +F
Sbjct: 300 EINPIPGSLAHYLF 313


>gi|317182047|dbj|BAJ59831.1| D-alanyl-alanine synthetase A [Helicobacter pylori F57]
          Length = 347

 Score =  211 bits (539), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 70/314 (22%), Positives = 127/314 (40%), Gaps = 47/314 (14%)

Query: 3   VLMGGISSEREVSLSSGKACASALED---------AGFKVSQIDVD-------------- 39
           VL GG S E E+S+ S  A   AL+D                I+                
Sbjct: 5   VLFGGASFEHEISIVSAIALKEALKDRIKYFIFLDENHHFYLIEESNMHSKYFAQIKEKK 64

Query: 40  ------------RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87
                       ++  L    ++  L  N++HG  GEDG + ++LE   I +    I AS
Sbjct: 65  LPPLILTRNGLLKNSFLGAKIIELPLVINLVHGGDGEDGKLASLLEFYRIAFIGPRIEAS 124

Query: 88  ALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI---SPPYVIKPLKGGSSLGIIVI 144
            LS +K  +K      GV     +L+N     +   +   + P+++KP   GSSLG+ V+
Sbjct: 125 VLSYNKYLTKLYAKDLGVKTLDYVLLNEKNRANALNLIGFNFPFIVKPSNAGSSLGVSVV 184

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE----LTCGVMGDASLDVTEIAVPKSDFY 200
           K+++ +   L    ++ +  ++LIE ++ G++      C +  D      E    K +F 
Sbjct: 185 KEEKELIYAL--DGAFEYSKEVLIEPFIQGVKEYNLAGCKIKKDFCFSYIE-EPNKQEFL 241

Query: 201 SYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260
            ++ KY   +      A +   + ++++      +  +    + R DF    +  +V+  
Sbjct: 242 DFKQKYLDFSRNKAPKANLSNALEEQLKENFKKLYNDLFDGALIRCDFFV--IENEVYLN 299

Query: 261 EINVQPGMTPVSIF 274
           EIN  PG     +F
Sbjct: 300 EINPIPGSLANYLF 313


>gi|315586593|gb|ADU40974.1| D-alanine--D-alanine ligase [Helicobacter pylori 35A]
          Length = 356

 Score =  211 bits (539), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 73/335 (21%), Positives = 133/335 (39%), Gaps = 55/335 (16%)

Query: 3   VLMGGISSEREVSLSSGKACASALED---------AGFKVSQIDVD-------------- 39
           VL GG S E E+S+ S  A   AL+D                I+                
Sbjct: 14  VLFGGASFEHEISIVSAIALKEALKDRIKYFIFLDENHHFYLIEESNMHSKYFAQIKEKK 73

Query: 40  ------------RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87
                       ++  L    ++  L  N++HG  GEDG + ++LE   I +    I AS
Sbjct: 74  LPPLILTRNGLLKNSFLGTKIIELPLVINLVHGGDGEDGKLASLLEFYRIAFIGPRIEAS 133

Query: 88  ALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI---SPPYVIKPLKGGSSLGIIVI 144
            LS +K  +K      GV     +L+N     +   +   + P+++KP   GSSLG+ V+
Sbjct: 134 VLSYNKYLTKLYAKDLGVKTLDYVLLNEKNRANALNLIGFNFPFIVKPSNAGSSLGVSVV 193

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE----LTCGVMGDASLDVTEIAVPKSDFY 200
           K+++ +   L    ++ +  ++LIE ++ G++      C +  D      E    K +F 
Sbjct: 194 KEEKELIYAL--DGAFEYSKEVLIEPFIQGVKEYNLAGCKIKKDFCFSYIE-EPNKQEFL 250

Query: 201 SYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260
            ++ KY   +      A +   + ++++      +  +    + R DF    +  +V+  
Sbjct: 251 DFKQKYLDFSRNKAPKANLSNALEEQLKENFKKLYNDLFDGALVRCDFFV--IENEVYLN 308

Query: 261 EINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           EIN  PG     +F          F+  L  +V+ 
Sbjct: 309 EINPIPGSLANYLFD--------DFKTTLENLVQS 335


>gi|268679679|ref|YP_003304110.1| D-alanine/D-alanine ligase [Sulfurospirillum deleyianum DSM 6946]
 gi|268617710|gb|ACZ12075.1| D-alanine/D-alanine ligase [Sulfurospirillum deleyianum DSM 6946]
          Length = 344

 Score =  211 bits (538), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 76/330 (23%), Positives = 136/330 (41%), Gaps = 50/330 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGF--------KVSQIDVDRSVGLVL------ 46
           +AVL G  S E E+S+ S  A    L+                I  D+            
Sbjct: 3   IAVLFGAQSFEHEISVVSAIALKKVLKSEIVYIFCDYERNFYLIPTDKITSKRFSSGEYK 62

Query: 47  --------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
                                 +  D+  N++HG  GEDG + A+L+   IPY    + A
Sbjct: 63  KDKALHVKQGGFYAKKMLGEEQISFDVMINLVHGRDGEDGKLSALLDFFGIPYIGPRMEA 122

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            ++S +K+ +K      GV V P  L+++ + ++   I+ P+++KPL+ GSS+GI ++K+
Sbjct: 123 CSISYNKLFTKLYAKEVGVNVLPYQLLHKGSNEAIS-IAYPFIVKPLRLGSSIGIGIVKE 181

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGI-ELTCGVMGDASLDVTEIAVP-KSDFYSYEL 204
           ++ +        ++   D +LIE ++ G+ E         S   + I  P K  F  ++ 
Sbjct: 182 EKEL--AYALDVAFEFDDTVLIEPFISGVKEYNLAGCKTDSFTFSIIEEPQKEAFLDFDK 239

Query: 205 KYSSLN-STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
           KY   + +  V  A + + + KE+Q      +  +    + R DF    +   V+  EIN
Sbjct: 240 KYLDFSRTKRVNEASLEVTLEKEIQTSFIKLYDPLFLGALIRCDFFV--IDGVVYLNEIN 297

Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
             PG     +F          F  ++  +V
Sbjct: 298 PVPGSMANYLFD--------DFDGVIKRLV 319


>gi|316933192|ref|YP_004108174.1| D-alanine--D-alanine ligase [Rhodopseudomonas palustris DX-1]
 gi|315600906|gb|ADU43441.1| D-alanine--D-alanine ligase [Rhodopseudomonas palustris DX-1]
          Length = 329

 Score =  211 bits (537), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 95/329 (28%), Positives = 147/329 (44%), Gaps = 45/329 (13%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR----SVGLVLAHLKP------- 51
           +L GG S ER VS++S +A   AL DA       D DR    +   +LAH +P       
Sbjct: 5   ILFGGTSKERLVSVASAQALQRALPDADLWFWN-DDDRVHCVTAQTLLAHARPFEEPFAP 63

Query: 52  --------DLAF-----------NVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
                   D+A              LHG   E+G +QA+ EL  +P+T SG  AS L+ D
Sbjct: 64  DGEMVGPLDIALDRAAAEHRLLVLGLHGGVAENGELQAMCELRRVPFTGSGAAASHLAFD 123

Query: 93  KMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152
           K  +K+  +  GV    S+ +     ++        + KP + GSS G+  I   Q +  
Sbjct: 124 KAAAKRFAAIAGVRT--SVGIALADAEAALETHGRLIAKPTRDGSSYGLFFINARQDLVA 181

Query: 153 DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA-----SLDVTEIAVPKSDFYSYELKYS 207
               + + ++    LIE +V G+E TCGV+        +L   EI VP    + Y  KY 
Sbjct: 182 VREAAKTEDY----LIEPFVAGVEATCGVLEAEDGSLLALPPIEI-VPADGGFDYTAKYL 236

Query: 208 SLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPG 267
           + ++  + P +   ++   +   A  AH+ + CRG SRSDF+         +LE N  PG
Sbjct: 237 AKSTQEICPGRFAPEVAAMIMDYAVRAHRVMSCRGYSRSDFIVGKDG--PIFLETNTLPG 294

Query: 268 MTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +T  S++P+     G  F + L   +  A
Sbjct: 295 LTGASLYPKALKAQGIDFVDFLKGQIALA 323


>gi|317010958|gb|ADU84705.1| D-alanyl-alanine synthetase A [Helicobacter pylori SouthAfrica7]
          Length = 347

 Score =  211 bits (537), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 74/314 (23%), Positives = 130/314 (41%), Gaps = 47/314 (14%)

Query: 3   VLMGGISSEREVSLSSGKACASALED---------AGFKVSQID-------------VDR 40
           VL GG S E E+S+ S  A    L+D                I+               +
Sbjct: 5   VLFGGASFEHEISIVSAIALKEVLKDQIKYFIFLDENHHFYLIEKSNMHSKYFAQIKEKK 64

Query: 41  SVGLVLAH-------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87
              L+LAH             ++  L  N++HG  GEDG + ++LE   I +    + AS
Sbjct: 65  LPPLMLAHNGLLKNSFLGTKTIELPLMINLVHGGDGEDGKLASLLEFYRIAFIGPRVEAS 124

Query: 88  ALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI---SPPYVIKPLKGGSSLGIIVI 144
            LS +K  +K    S GV     IL+N     +   +   + P+++KP   GSSLG+ V+
Sbjct: 125 VLSYNKHLTKLYAKSLGVKTLDHILLNEKNRANALDLINFNFPFIVKPNSAGSSLGVSVV 184

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE----LTCGVMGDASLDVTEIAVPKSDFY 200
           ++++ +        ++ +  ++LIE ++ G++      C +  D      E    K +F 
Sbjct: 185 REEKEL--AYALDGAFEYSKEVLIEPFIQGVKEYNLAGCKIKKDFCFSYVE-EPNKQEFL 241

Query: 201 SYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260
            ++ KY   +      A IP  + ++++      +  +    I R DF    +  +V+  
Sbjct: 242 DFKQKYLDFSRAKAPKADIPNALEEQLRENFKKLYNDLFDGAIIRCDFFV--IDNEVYLN 299

Query: 261 EINVQPGMTPVSIF 274
           EIN  PG     +F
Sbjct: 300 EINPIPGSLAHYLF 313


>gi|161528516|ref|YP_001582342.1| D-alanine--D-alanine ligase [Nitrosopumilus maritimus SCM1]
 gi|160339817|gb|ABX12904.1| D-alanine--D-alanine ligase [Nitrosopumilus maritimus SCM1]
          Length = 743

 Score =  210 bits (536), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 77/311 (24%), Positives = 138/311 (44%), Gaps = 23/311 (7%)

Query: 4   LMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL--------KPDLAF 55
           + G  + E   S  + +  A ALE  G  V  I+ D  +   L           KP + F
Sbjct: 41  VFGMTTKEHYSS-KAVERVARALEKGGHSVKVIEGDIHLADELREFMPKVVSGEKPGMVF 99

Query: 56  NVLHGNFGEDG--LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
           N+ +G  G++    V A++E+L IPY  SG    A+  DK+ +K V+    +P  P   V
Sbjct: 100 NMAYGIQGQNRYTHVPAMMEMLGIPYIGSGPAGHAIVQDKVMTKIVLQKNNIPT-PGFWV 158

Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
            +   D    +  P ++KP    +S+G+ V+     +   +       +   +L+EQ++ 
Sbjct: 159 FKTPDDKFDDLVFPVIVKPKLESTSMGMEVVDNWDDLRNAVKVQIE-KYQQDILVEQFIS 217

Query: 174 GIELTCGVMGD----ASLDVTEIAVPKSD-FYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           G E   G++G+      L + EI +   D   +   K  +       PAK+  +  + ++
Sbjct: 218 GREFAVGLIGNSPNIEVLPIVEINLGDPDKIQTISDKKKTGGVDKTCPAKLSKEKTEYMK 277

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP--GMTPVSIFPEMAAYAGYSFR 286
           ++   A  A+G    +R DF  D     ++ LE+N     GM   S+F   A  AGY++ 
Sbjct: 278 KICIDAFTALGLNDYTRVDFRMDKDEN-IYILELNSMASLGM-GGSLF-YAAKTAGYTYE 334

Query: 287 ELLLWMVEDAS 297
            L+  +++ A+
Sbjct: 335 SLINKILDVAT 345


>gi|16519939|ref|NP_444059.1| conserved putative 40.0 kDa D-alanine--D-alanine ligase
           [Sinorhizobium fredii NGR234]
 gi|2494029|sp|P55650|Y4SG_RHISN RecName: Full=Uncharacterized protein y4sG
 gi|2182621|gb|AAB91846.1| conserved putative 40.0 kDa D-alanine--D-alanine ligase
           [Sinorhizobium fredii NGR234]
          Length = 336

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 75/294 (25%), Positives = 141/294 (47%), Gaps = 19/294 (6%)

Query: 19  GKACASALEDAGFKVSQIDVDRSVGLVLAH-LKPD-------LAFNVLHGNFGEDG--LV 68
             +  +AL++ G +    + D+ +   L   + PD       + FN+  G  GE     V
Sbjct: 35  ADSVVAALQECGHETLLCEGDKGLLTTLERFMPPDPLARTSGMVFNLAEGIQGEYRFTHV 94

Query: 69  QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPY 128
            A+LE+  +PYT S  L   L+ DK+ SK ++   GVP     ++ R T +S   +  P 
Sbjct: 95  PAMLEMAGVPYTGSSPLGHGLTDDKVISKTLMRDSGVPTPNFSIMRRGT-ESTDDLRFPV 153

Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD 188
           V+KP    +S G+ ++ +   +   +    +  +    L+E+Y+DG E+   ++G+  ++
Sbjct: 154 VVKPRHEDNSFGLQLVHEPAQLQQAVKMIVT-KYAQDALVEEYIDGREIHVALLGNQEVE 212

Query: 189 VT-----EIAVPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
           V      E+   ++   ++E KY +++      PAKI   +   ++ ++    +A  CR 
Sbjct: 213 VLPMVEFELGEHEAPLLTWEAKYLAAVQPPKTCPAKIESKLATLLRDISVATFRACQCRD 272

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            +R D   D  S + F LEIN  PG++  S +   A  AG+S+  L+  +++ A
Sbjct: 273 YARVDLRLD-RSGQPFVLEINSMPGLSTHSAYVLAAMTAGHSYSSLINGILDVA 325


>gi|207092530|ref|ZP_03240317.1| D-alanyl-alanine synthetase A [Helicobacter pylori HPKX_438_AG0C1]
          Length = 347

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 74/314 (23%), Positives = 130/314 (41%), Gaps = 47/314 (14%)

Query: 3   VLMGGISSEREVSLSSGKACASALE---------DAGFKVSQIDV-------------DR 40
           VL GG S E E+S+ S  A   AL+         D       I+               +
Sbjct: 5   VLFGGASFEHEISIVSAIALKEALKGRIKYFIFLDENHHFYLIEETNMHSKYFAQIKEKK 64

Query: 41  SVGLVLAH-------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87
              L+L H             ++  L  N++HG  GEDG + ++LE   I +    I AS
Sbjct: 65  LPPLILTHNGLLKNSFLSTKIIELPLVINLVHGGDGEDGKLASLLEFYRIAFIGPRIEAS 124

Query: 88  ALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI---SPPYVIKPLKGGSSLGIIVI 144
            LS +K  +K      G+     +LVN     +   +   + P+++KP   GSSLG+ V+
Sbjct: 125 VLSYNKYLTKLYAKDLGIKTLDHVLVNEKNRANALDLIGFNFPFIVKPSNAGSSLGVNVV 184

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE----LTCGVMGDASLDVTEIAVPKSDFY 200
           K+++ +   L   S++ +  ++LIE ++ G++      C +  D      E    K +F 
Sbjct: 185 KEEKELVYAL--DSAFEYSKEVLIEPFIQGVKEYNLAGCKIKKDLCFSYVE-EPNKQEFL 241

Query: 201 SYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260
            ++ KY   +      A +   + ++++      +  +    I R DF    +  +V+  
Sbjct: 242 DFKQKYLDFSRNKAPKASLSNALEEQLKENFKKLYNDLFSGAIIRCDFFV--IENEVYLN 299

Query: 261 EINVQPGMTPVSIF 274
           EIN  PG     +F
Sbjct: 300 EINPIPGSLANYLF 313


>gi|217032140|ref|ZP_03437639.1| hypothetical protein HPB128_186g6 [Helicobacter pylori B128]
 gi|298736440|ref|YP_003728966.1| D-alanine-D-alanine ligase [Helicobacter pylori B8]
 gi|216946130|gb|EEC24739.1| hypothetical protein HPB128_186g6 [Helicobacter pylori B128]
 gi|298355630|emb|CBI66502.1| D-alanine-D-alanine ligase [Helicobacter pylori B8]
          Length = 347

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 75/314 (23%), Positives = 132/314 (42%), Gaps = 47/314 (14%)

Query: 3   VLMGGISSEREVSLSSGKACASALED---------AGFKVSQIDV-------------DR 40
           VL GG S E E+S+ S  A   AL+D                I+               +
Sbjct: 5   VLFGGASFEHEISIVSAIALKEALKDRIKHFIFLDEDHHFYLIEASNMHSKYFAQIKEKK 64

Query: 41  SVGLVLAH-------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87
              L+L H             ++  L  N++HG  GEDG + ++LE   I +    + AS
Sbjct: 65  LPPLILTHNGLLKNSFLGAKIIELPLVINLVHGGDGEDGKLASLLEFYRIAFIGPRVEAS 124

Query: 88  ALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI---SPPYVIKPLKGGSSLGIIVI 144
            LS +K  +K   ++ GV     +L+N     +   +   + P++IKP   GSSLG+ V+
Sbjct: 125 VLSYNKYLTKLYANNLGVKTLGHVLLNEKNRANALDLMNFNFPFIIKPNSAGSSLGVSVV 184

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE----LTCGVMGDASLDVTEIAVPKSDFY 200
           K+++ +   L   S++ +  ++LIE ++ G++      C +  D      E    K +F 
Sbjct: 185 KEEKELIYAL--DSAFEYSKEVLIEPFIQGVKEYNLAGCKIKKDFCFSYVE-EPNKQEFL 241

Query: 201 SYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260
            ++ KY   +      A +   + ++++      +  +    I R DF    +  KV+  
Sbjct: 242 DFKQKYLDFSRAKSPKANLSSALEEQLKENFKKLYNDLFDGAIIRCDFFV--IENKVYLN 299

Query: 261 EINVQPGMTPVSIF 274
           EIN  PG     +F
Sbjct: 300 EINPIPGSLAHYLF 313


>gi|307322535|ref|ZP_07601881.1| D-alanine--D-alanine ligase [Sinorhizobium meliloti AK83]
 gi|306891817|gb|EFN22657.1| D-alanine--D-alanine ligase [Sinorhizobium meliloti AK83]
          Length = 332

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 78/295 (26%), Positives = 141/295 (47%), Gaps = 23/295 (7%)

Query: 20  KACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------DLAFNVLHGNFGEDGL--VQ 69
           +   +AL++ G +    + D+ +   L    P         + FN+  G  GE     V 
Sbjct: 33  EGVVAALQEGGHETLLCEGDKGLLTTLERFMPTNPQGRPSGIVFNLAEGIQGECRCTHVP 92

Query: 70  AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYV 129
           A+LE+  +PYT SG L  AL++DK+ +K+++  CGVP     ++ R T +S   +  P V
Sbjct: 93  AMLEMAGVPYTASGPLGHALTLDKVITKRLLRDCGVPTPNFRVMRRGT-ESIGDLRFPLV 151

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           +KP     SLG+ ++ +   +    +++    +    L+E+Y+DG E+   ++G+  LDV
Sbjct: 152 VKPRLEDCSLGLQLVHEPAQLRQA-VEAIVTQYKQDALVEEYIDGREIAVALLGNEELDV 210

Query: 190 TEIAVPKSDFYSYELKYSSLNSTH--------VLPAKIPLDIYKEVQRLAFLAHQAIGCR 241
               + + DF   E +  +  + +        + PA+I   I   ++ ++  A +A  CR
Sbjct: 211 --FPLVEHDFGDRETRLMTREAKYVANAMPPQICPAQIGSGIEAVLRDISVAAFRACQCR 268

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             +R D   D    + F LEIN  PG++  S +      AGYS   L+  +++ A
Sbjct: 269 DYARVDLRVDRF-GQPFVLEINPLPGLSMSSSYVLAGMTAGYSLTSLVNRILDVA 322


>gi|308062059|gb|ADO03947.1| D-alanyl-alanine synthetase A [Helicobacter pylori Cuz20]
          Length = 347

 Score =  209 bits (533), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 69/314 (21%), Positives = 127/314 (40%), Gaps = 47/314 (14%)

Query: 3   VLMGGISSEREVSLSSGKACASALED---------AGFKVSQIDVD-------------- 39
           VL GG S E E+S+ S  A   AL+D                I+                
Sbjct: 5   VLFGGASFEHEISIVSAIALKEALKDRIKYFIFLDENHHFYLIEESNMHSKYFAQIKEKK 64

Query: 40  ------------RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87
                       ++  L    ++  L  N++HG  GEDG + ++LE   I +    I AS
Sbjct: 65  LPPLILTRNGLLKNSFLGAKIIELPLVINLVHGGDGEDGKLASLLEFYRIAFIGPRIEAS 124

Query: 88  ALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI---SPPYVIKPLKGGSSLGIIVI 144
            LS +K  +K      G+     +L+N     +   +   + P+++KP   GSSLG+ V+
Sbjct: 125 VLSYNKYLTKLYAKDLGIKALDHVLLNEKNRANALNLIGFNFPFIVKPNNAGSSLGVSVV 184

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE----LTCGVMGDASLDVTEIAVPKSDFY 200
           K+++ +   L    ++ +  ++LIE ++ G++      C +  D      E    K +F 
Sbjct: 185 KEEKELIYAL--DGAFEYSKEVLIEPFIQGVKEYNLAGCKIKKDFCFSYIE-EPNKQEFL 241

Query: 201 SYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260
            ++ KY   +      A +   + ++++      +  +    + R DF    +  +V+  
Sbjct: 242 DFKQKYLDFSRNKAPKANLSNALEEQLKENFKKLYNDLFDGALIRCDFFV--IENEVYLN 299

Query: 261 EINVQPGMTPVSIF 274
           EIN  PG     +F
Sbjct: 300 EINPIPGSLANYLF 313


>gi|261838029|gb|ACX97795.1| D-alanine:D-alanine ligase A [Helicobacter pylori 51]
          Length = 347

 Score =  209 bits (533), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 69/314 (21%), Positives = 126/314 (40%), Gaps = 47/314 (14%)

Query: 3   VLMGGISSEREVSLSSGKACASALE---------DAGFKVSQIDVD-------------- 39
           VL GG S E E+S+ S      AL+         D       I+                
Sbjct: 5   VLFGGASFEHEISIVSAIVLKEALKGRIKYFIFLDENHHFYLIEESNMHSKYFAQIKEKK 64

Query: 40  ------------RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87
                       ++  L    ++  L  N++HG  GEDG + ++LE   I +    I AS
Sbjct: 65  LPPLILTRNGLLKNSFLGTKIIELPLVINLVHGGDGEDGKLASLLEFYRIAFIGPRIEAS 124

Query: 88  ALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI---SPPYVIKPLKGGSSLGIIVI 144
            LS +K  +K      GV     +L+N     +   +   + P+++KP   GSSLG+ V+
Sbjct: 125 VLSYNKYLTKLYAKDLGVKTLDYVLLNEKNRTNALNLIGFNFPFIVKPSNAGSSLGVSVV 184

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE----LTCGVMGDASLDVTEIAVPKSDFY 200
           K+++ +   L    ++ +  ++LIE ++ G++      C +  D      E    K +F 
Sbjct: 185 KEEKELIYAL--DGAFEYSKEVLIEPFIQGVKEYNLAGCKIKKDFCFSYIE-EPNKQEFL 241

Query: 201 SYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260
            ++ KY   +      A +   + ++++      +  +    + R DF    +  +V+  
Sbjct: 242 DFKQKYLDFSRNKAPKANLSNALEEQLKENFKKLYNDLFDGALIRCDFFV--IKNEVYLN 299

Query: 261 EINVQPGMTPVSIF 274
           EIN  PG     +F
Sbjct: 300 EINPIPGSLANYLF 313


>gi|213853003|ref|ZP_03382535.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Typhi str. M223]
          Length = 269

 Score =  209 bits (533), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 61/265 (23%), Positives = 115/265 (43%), Gaps = 53/265 (20%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50
           + ++ GG S+E EVSL S K    A++   F V  + +D++    +   +          
Sbjct: 6   VGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGIDKAGQWHVNDAENYLQNADDPA 65

Query: 51  ---------------------------------PDLAFNVLHGNFGEDGLVQAILELLEI 77
                                             D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  HIALRPSAISLAQVPGKHQHQLINAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR------FTMDSQHLISPPYVIK 131
           P+  S +L+SA  MDK  +K+++   G+ + P I + R         + +  +  P  +K
Sbjct: 126 PFVGSDVLSSAACMDKDVAKRLLRDAGLNIAPFITLTRTNRHAFSFAEVESRLGLPLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  +  +      +  +  ++H  ++++EQ + G E+ C V+G+ +   + 
Sbjct: 186 PANQGSSVGVSKVANEAQYQQAVALAFEFDH--KVVVEQGIKGREIECAVLGNDNPQAST 243

Query: 192 IA--VPKSDFYSYELKYSSLNSTHV 214
               V  S+FY+Y+ KY   N   V
Sbjct: 244 CGEIVLNSEFYAYDTKYIDDNGAQV 268


>gi|157415069|ref|YP_001482325.1| D-alanyl-alanine synthetase A [Campylobacter jejuni subsp. jejuni
           81116]
 gi|189083034|sp|A8FLL1|DDL_CAMJ8 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|157386033|gb|ABV52348.1| putative D-alanine--D-alanine ligase [Campylobacter jejuni subsp.
           jejuni 81116]
 gi|315931216|gb|EFV10188.1| D-alanine--D-alanine ligase family protein [Campylobacter jejuni
           subsp. jejuni 327]
          Length = 346

 Score =  209 bits (533), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 71/332 (21%), Positives = 136/332 (40%), Gaps = 50/332 (15%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------- 48
           A+L GG S E E+S+ S       + +   +    D +R    + +              
Sbjct: 4   AILFGGNSYEHEISIVSA-VVLKKVINQNLEFVFCDEERRFYHIPSEKMNSKTFSTKAYK 62

Query: 49  ----------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
                                 L+ +   N++HG  GEDG + A+ E   I +    + A
Sbjct: 63  NEKELFIKQGGFFSKGFLKENKLECECVINLIHGRDGEDGKIAALFEFYSIKFIGPRLEA 122

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           S LS +K  +K    S GV      ++ R   +S+  +S P +IKP + GSS+GI ++K 
Sbjct: 123 SVLSFNKELTKLYAKSVGVKTLDYTML-RKNQNSKEKLSFPCIIKPARLGSSIGISIVKD 181

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDVTEIAVP-KSDFYSYE 203
           ++ +     +   +   + L++E++ + I+     G M +     + I  P K +F  +E
Sbjct: 182 EKDLEYA--KDVGFEFDNDLVVEEFKNNIKEYNLAGCMINDEFVFSIIEEPKKKEFLDFE 239

Query: 204 LKYSSLNST-HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
            KY S +    ++ A +  ++ ++++      +  +    + R DF    L  +V+  EI
Sbjct: 240 QKYLSFSGHNELIEADLSEELKEKLKDSFKKIYNPLFKGALIRCDFFI--LDNEVYLNEI 297

Query: 263 NVQPGMTPVSIFPEM-----AAYAGYSFRELL 289
           N  PG     +F +      A     S  +++
Sbjct: 298 NPNPGSLANYLFKDFNTTLNALADQISLEKMI 329


>gi|88597497|ref|ZP_01100731.1| D-alanine--D-alanine ligase [Campylobacter jejuni subsp. jejuni
           84-25]
 gi|88190089|gb|EAQ94064.1| D-alanine--D-alanine ligase [Campylobacter jejuni subsp. jejuni
           84-25]
          Length = 346

 Score =  209 bits (533), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 70/332 (21%), Positives = 136/332 (40%), Gaps = 50/332 (15%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------- 48
           A+L GG S E E+S+ S       + +   +    D +R    + +              
Sbjct: 4   AILFGGNSYEHEISIVSA-VVLKKVINQNLEFIFCDKERRFYHIPSEKMNSKTFSTKAYK 62

Query: 49  ----------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
                                 L+ +   N++HG  GEDG + A+ E   I +    + A
Sbjct: 63  KEKELFIKQGGFFSKGFLKENKLECECVINLIHGRDGEDGKIAALFEFYSIKFIGPRLEA 122

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           S LS +K  +K    S GV      ++ R   +S+  +S P +IKP + GSS+GI ++K 
Sbjct: 123 SVLSFNKELTKLYAKSVGVKTLDYTIL-RKNQNSKEKLSFPCIIKPARLGSSIGISIVKD 181

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDVTEIAVP-KSDFYSYE 203
           ++ +     +   +   + L++E++ + I+     G M +     + I  P K +F  +E
Sbjct: 182 EKDLEYA--KDVGFEFDNDLVVEEFKNNIKEYNLAGCMINDEFVFSIIEEPKKKEFLDFE 239

Query: 204 LKYSSLNST-HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
            KY S +    ++ A +  ++ ++++      +  +    + R DF    L  +++  EI
Sbjct: 240 QKYLSFSGHNELIEADLSEELKEKLKDSFKKIYNPLFKGALIRCDFFI--LDNEIYLNEI 297

Query: 263 NVQPGMTPVSIFPEM-----AAYAGYSFRELL 289
           N  PG     +F +      A     S  +++
Sbjct: 298 NPNPGSLANYLFKDFNTTLNALADQISLEKMI 329


>gi|58201633|gb|AAW66893.1| vancomycin resistance protein C1 [Enterococcus gallinarum]
          Length = 235

 Score =  209 bits (533), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 66/223 (29%), Positives = 120/223 (53%), Gaps = 11/223 (4%)

Query: 47  AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP 106
             + PD+ F VLHG +GEDG +Q +LEL+ +PY    + ASAL M+K    Q+  + G+ 
Sbjct: 16  KRIVPDVLFPVLHGKYGEDGCIQGLLELMNLPYVGCHVAASALCMNKWLLHQLADTMGIA 75

Query: 107 VCPSILVNRFTMDSQHL------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160
             P++L++R+  D   +         P  IKP + GSS GI  +    ++   L  ++++
Sbjct: 76  SAPTLLLSRYENDPATIDRFIQDHGFPIFIKPNEAGSSKGITKVTDKTALHSAL--TTAF 133

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK--SDFYSYELKYSSLNSTHVLPAK 218
            +G  +LI++ + GIE+ CG++G+  L +           F+ +E KY  +++T  +PA 
Sbjct: 134 AYGSTVLIQKAIAGIEIGCGILGNEQLTIGACDAISLVDGFFDFEEKYQLISATITVPAP 193

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
           +PL +  +++  A L ++ +G  G++R DF        ++  E
Sbjct: 194 LPLALESQIKEQAQLLYRNLGLTGLARIDFFVTNQ-GAIYLNE 235


>gi|108563147|ref|YP_627463.1| D-alanyl-alanine synthetase A [Helicobacter pylori HPAG1]
 gi|122980504|sp|Q1CTD3|DDL_HELPH RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|107836920|gb|ABF84789.1| D-alanine:D-alanine ligase A [Helicobacter pylori HPAG1]
          Length = 347

 Score =  209 bits (533), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 74/314 (23%), Positives = 130/314 (41%), Gaps = 47/314 (14%)

Query: 3   VLMGGISSEREVSLSSGKACASALED---------AGFKVSQIDV-------------DR 40
           VL GG S E E+S+ S  A    L+D                I+               +
Sbjct: 5   VLFGGASFEHEISIVSAIALKGVLKDRIKYFIFLDENHHFYLIEASNMHSKYFAQIKEKK 64

Query: 41  SVGLVLAH-------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87
              L+L H             ++  L  N++HG  GEDG + ++LE   I +    I AS
Sbjct: 65  LPPLILTHKGLLKNSFLGAKIIELPLVINLVHGGDGEDGKLASLLEFYRIAFIGPRIEAS 124

Query: 88  ALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI---SPPYVIKPLKGGSSLGIIVI 144
            LS +K  +K      G+     +L+N     +   +   + P++IKP   GSSLG+ V+
Sbjct: 125 VLSYNKYLTKLYAKDLGIKTLDHVLLNEKNRANAMDLINFNFPFIIKPNSAGSSLGVSVV 184

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE----LTCGVMGDASLDVTEIAVPKSDFY 200
           K+++ +   L   S++ +  ++LIE ++ G++      C +  D      E    K +F 
Sbjct: 185 KEEKELNYAL--DSAFEYSKEVLIEPFIQGVKEYNLAGCKIKKDFCFSYVE-EPNKQEFL 241

Query: 201 SYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260
            ++ KY   + T    A +   + ++++      +  +    I R DF    +  +V+  
Sbjct: 242 DFKQKYLDFSRTKAPKANLSNALEEQLKENFKKLYNDLFDGAIIRCDFFV--IENEVYLN 299

Query: 261 EINVQPGMTPVSIF 274
           EIN  PG     +F
Sbjct: 300 EINPIPGSLANYLF 313


>gi|86150203|ref|ZP_01068430.1| D-alanine--D-alanine ligase [Campylobacter jejuni subsp. jejuni
           CF93-6]
 gi|218562426|ref|YP_002344205.1| D-alanyl-alanine synthetase A [Campylobacter jejuni subsp. jejuni
           NCTC 11168]
 gi|22095570|sp|Q9PPC2|DDL_CAMJE RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|85839319|gb|EAQ56581.1| D-alanine--D-alanine ligase [Campylobacter jejuni subsp. jejuni
           CF93-6]
 gi|112360132|emb|CAL34926.1| D-alanine--D-alanine ligase [Campylobacter jejuni subsp. jejuni
           NCTC 11168]
 gi|284926044|gb|ADC28396.1| D-alanyl-alanine synthetase A [Campylobacter jejuni subsp. jejuni
           IA3902]
          Length = 346

 Score =  209 bits (532), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 70/332 (21%), Positives = 136/332 (40%), Gaps = 50/332 (15%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------- 48
           A+L GG S E E+S+ S       + +   +    D +R    + +              
Sbjct: 4   AILFGGNSYEHEISIVSA-VVLKKVINQNLEFIFCDEERRFYHIPSEKMNSKTFSTKAYK 62

Query: 49  ----------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
                                 L+ +   N++HG  GEDG + A+ E   I +    + A
Sbjct: 63  KEKELFIKQGGFFSKGFLKENKLECECVINLIHGRDGEDGKIAALFEFYSIKFIGPRLEA 122

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           S LS +K  +K    S GV      ++ R   +S+  +S P +IKP + GSS+GI ++K 
Sbjct: 123 SVLSFNKELTKLYAKSVGVKTLDYTIL-RKNQNSKEKLSFPCIIKPARLGSSIGISIVKD 181

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDVTEIAVP-KSDFYSYE 203
           ++ +     +   +   + L++E++ + I+     G M +     + I  P K +F  +E
Sbjct: 182 EKDLEYA--KDVGFEFDNDLVVEEFKNNIKEYNLAGCMINDEFVFSIIEEPKKKEFLDFE 239

Query: 204 LKYSSLNST-HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
            KY S +    ++ A +  ++ ++++      +  +    + R DF    L  +++  EI
Sbjct: 240 QKYLSFSGHNELIEADLSEELKEKLKDSFKKIYNPLFKGALIRCDFFI--LDNEIYLNEI 297

Query: 263 NVQPGMTPVSIFPEM-----AAYAGYSFRELL 289
           N  PG     +F +      A     S  +++
Sbjct: 298 NPNPGSLANYLFKDFNTTLNALADQISLEKMI 329


>gi|328956078|ref|YP_004373411.1| D-alanine--D-alanine ligase [Coriobacterium glomerans PW2]
 gi|328456402|gb|AEB07596.1| D-alanine--D-alanine ligase [Coriobacterium glomerans PW2]
          Length = 375

 Score =  209 bits (532), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 85/374 (22%), Positives = 147/374 (39%), Gaps = 82/374 (21%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AV+MGG S ERE SL SG   A  LE     V  +D    +   L   +PD+A   +HG
Sbjct: 3   VAVIMGGTSLEREFSLKSGHRIARELEAKDHIVLPLDATSELTCALRSGRPDVALIAVHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDK--------------------------- 93
             GEDG +Q +LE L IPY  S   +   S +K                           
Sbjct: 63  LGGEDGAIQGLLEFLRIPYVGSTSESCRASWNKVDLPRAFNSYLLAHPDRLEDASASRSA 122

Query: 94  -----------MRSKQVVSSCG-------------VPVCPSILVNRFTMDSQ-------- 121
                       +   V S  G             +P   +  +      S         
Sbjct: 123 HERGCSSEHPADQLDAVFSRVGSDCARDMLPNNPLIPTPKTFCLTEVAFRSMGAAAALDL 182

Query: 122 --HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
               +  P  +KP  GGS++G+  +   +++   ++ + S+   D+++I+++++G+EL+ 
Sbjct: 183 VCDRLGYPVAVKPACGGSAMGVSRVGCQEALGEAIMGALSF--DDKVIIQEWLEGVELSV 240

Query: 180 GVMGD-----ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP-----------LDI 223
            +         SL   EIA PK  F++   +       +  P +              D+
Sbjct: 241 AICCGQDGAARSLTPVEIA-PKETFFTTAARLDPSAVDYFAPVREESLVANGHGRSADDL 299

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283
              + R A  A  A+GCR ++R D +        + +++ V PGM+  S+ P   A +G+
Sbjct: 300 DSLIARTALDAFCALGCRDLARVDMML--SDGVAYVIDVKVAPGMSENSLLPMAVAASGF 357

Query: 284 SFRELLLWMVEDAS 297
              ++   +V  A+
Sbjct: 358 DLGDIFDGLVRRAA 371


>gi|307747710|gb|ADN90980.1| D-alanine--D-alanine ligase [Campylobacter jejuni subsp. jejuni M1]
          Length = 346

 Score =  209 bits (532), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 70/332 (21%), Positives = 135/332 (40%), Gaps = 50/332 (15%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------- 48
           A+L GG S E E+S+ S       + +   +    D +R    + +              
Sbjct: 4   AILFGGNSYEHEISIVSA-VVLKKVINQNLEFVFCDEERRFYHIPSEKMNSKTFSTKAYK 62

Query: 49  ----------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
                                 L+ +   N++HG  GEDG + A+ E   I +    + A
Sbjct: 63  NEKELFIKQGGFFSKGFLKENKLECECVINLIHGRDGEDGKIAALFEFYSIKFIGPRLEA 122

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           S LS +K  +K    S GV      ++ R   +S+  +  P +IKP + GSS+GI ++K 
Sbjct: 123 SVLSFNKELTKLYAKSVGVKTLDYTML-RKNQNSKEKLRFPCIIKPARLGSSIGISIVKD 181

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDVTEIAVP-KSDFYSYE 203
           ++ +     +   +   + L++E++ + I+     G M +     + I  P K +F  +E
Sbjct: 182 EKDLEYA--KDVGFEFDNDLVVEEFKNNIKEYNLAGCMINDEFVFSIIEEPKKKEFLDFE 239

Query: 204 LKYSSLNST-HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
            KY S +    ++ A +  ++ ++++      +  +    + R DF    L  +V+  EI
Sbjct: 240 QKYLSFSGHNELIEADLSEELKEKLKDSFKKIYNPLFKGALIRCDFFI--LDNEVYLNEI 297

Query: 263 NVQPGMTPVSIFPEM-----AAYAGYSFRELL 289
           N  PG     +F +      A     S  +++
Sbjct: 298 NPNPGSLANYLFKDFNTTLNALADQISLEKMI 329


>gi|86153489|ref|ZP_01071693.1| D-alanine--D-alanine ligase [Campylobacter jejuni subsp. jejuni
           HB93-13]
 gi|85843215|gb|EAQ60426.1| D-alanine--D-alanine ligase [Campylobacter jejuni subsp. jejuni
           HB93-13]
          Length = 346

 Score =  208 bits (531), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 71/332 (21%), Positives = 136/332 (40%), Gaps = 50/332 (15%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------- 48
           A+L GG S E E+S+ S       + +   +    D +R    + +              
Sbjct: 4   AILFGGNSYEHEISIVSA-VVLKKVINQNLEFIFCDEERRFYHIPSEKMNSKTFSTKAYK 62

Query: 49  ----------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
                                 L+ +   N++HG  GEDG + A+ E   I +    + A
Sbjct: 63  KEKELFIKQGGFFNKGFLKENKLECECVINLIHGRDGEDGKIAALFEFYSIKFIGPRLEA 122

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           S LS +K  +K    S GV      ++ R   +S+  +S P +IKP + GSS+GI ++K 
Sbjct: 123 SVLSFNKELTKLYAKSVGVKTLDYTML-RKNQNSKEKLSFPCIIKPARLGSSIGISIVKD 181

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDVTEIAVP-KSDFYSYE 203
           ++ +     +   +   + L++E++ + I+     G M +     + I  P K +F  +E
Sbjct: 182 EKDLEYA--KDVGFEFDNDLVVEEFKNNIKEYNLAGCMINDEFAFSIIEEPKKKEFLDFE 239

Query: 204 LKYSSLNST-HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
            KY S +    ++ A +  ++ ++++      +  +    + R DF    L  +V+  EI
Sbjct: 240 QKYLSFSGHNELIEADLSEELKEKLKDSFKKIYNPLFKGALIRCDFFI--LDNEVYLNEI 297

Query: 263 NVQPGMTPVSIFPEM-----AAYAGYSFRELL 289
           N  PG     +F +      A     S  +++
Sbjct: 298 NPNPGSLANYLFKDFSTTLNALADQISLEKMI 329


>gi|208434649|ref|YP_002266315.1| D-alanine: D-alanine ligase A [Helicobacter pylori G27]
 gi|208432578|gb|ACI27449.1| D-alanine: D-alanine ligase A [Helicobacter pylori G27]
          Length = 349

 Score =  208 bits (530), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 73/314 (23%), Positives = 130/314 (41%), Gaps = 47/314 (14%)

Query: 3   VLMGGISSEREVSLSSGKACASALED---------AGFKVSQIDV-------------DR 40
           VL GG+S E E+S+ S  A    L+D                I+               +
Sbjct: 7   VLFGGVSFEHEISIVSAIALKGVLKDRIKYFLFLDENHHFYLIEESNMHSKYFAQIKEKK 66

Query: 41  SVGLVLAH-------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87
              L+L H             ++  L  N++HG  GEDG + ++LE   I +    I AS
Sbjct: 67  LPPLILTHNGLLKNSFLGAKIIELPLVINLVHGGDGEDGKLASLLEFYRIAFIGPRIEAS 126

Query: 88  ALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI---SPPYVIKPLKGGSSLGIIVI 144
            LS +K  +K      GV     +L+N     +   +   + P+++KP   GSSLG+ V+
Sbjct: 127 VLSYNKYLTKLYAKDLGVKTLDYVLLNEKNRANALDLIEFNFPFIVKPSNAGSSLGVNVV 186

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE----LTCGVMGDASLDVTEIAVPKSDFY 200
           K+++ +   L   S++ +  ++LIE ++ G++      C +  D      E    K +F 
Sbjct: 187 KEEKELIYAL--DSAFEYSKEVLIEPFIQGVKEYNLAGCKIKKDFCFSYVE-EPSKQEFL 243

Query: 201 SYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260
            ++ KY   +      A +   + ++++      +  +    I R DF    +  +V+  
Sbjct: 244 DFKQKYLDFSRNKAPKANLSNALEEQLKENFKKLYNDLFSGAIIRCDFFV--IENEVYLN 301

Query: 261 EINVQPGMTPVSIF 274
           EIN  PG     +F
Sbjct: 302 EINPIPGSLANYLF 315


>gi|289769956|ref|ZP_06529334.1| D-alanine-D-alanine ligase B [Streptomyces lividans TK24]
 gi|289700155|gb|EFD67584.1| D-alanine-D-alanine ligase B [Streptomyces lividans TK24]
          Length = 326

 Score =  208 bits (530), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 79/292 (27%), Positives = 139/292 (47%), Gaps = 13/292 (4%)

Query: 14  VSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILE 73
           V   S  A A ALE+ G +   ++       ++  ++ D+A + LHG +GEDG +Q +L+
Sbjct: 14  VEQRSVTALAEALEEIGARWKVLNPCEPD-FIMELVEYDVALSNLHGPYGEDGRLQGLLD 72

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPL 133
            L +PY  SG+ ASA++ DK+  K+V+ + GVP     +   ++           ++KP 
Sbjct: 73  YLRVPYCGSGVGASAVAADKILCKRVMLTLGVPTPGWHV---WSGGPVAWYGRTIMVKPP 129

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG-----DASLD 188
            GGSS+G+ +++    +P  L  + + +    +LIE+YV G  +T G++           
Sbjct: 130 FGGSSVGMSLVRDPADLPGALADA-AGDGCAPVLIEEYVTGTPMTVGLLELPGGSAVVFP 188

Query: 189 VTEIAVPKSDFYSYELKYSSL--NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRS 246
                  ++DFY  + K       +  V  A +      ++   A      +G RG +R 
Sbjct: 189 PLTTEATEADFYDADTKLDVDLRGAVTVRAANLAPAALDKITAHARTLWNGLGLRGSARI 248

Query: 247 DFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           DF+      + + LE+N  PGM+  S F   AA  G +  E++L M+ +A  
Sbjct: 249 DFILTE-DNEPYVLEVNTTPGMSRDSNFAVGAAMVGLTHTEVVLAMLHEALA 299


>gi|205356768|ref|ZP_03223527.1| D-alanine-D-alanine ligase [Campylobacter jejuni subsp. jejuni
           CG8421]
 gi|205345335|gb|EDZ31979.1| D-alanine-D-alanine ligase [Campylobacter jejuni subsp. jejuni
           CG8421]
          Length = 346

 Score =  208 bits (530), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 70/332 (21%), Positives = 136/332 (40%), Gaps = 50/332 (15%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------- 48
           A+L GG S E E+S+ S       + +   +    D +R    + +              
Sbjct: 4   AILFGGNSYEHEISIVSA-VVLKKVINQNLEFIFCDEERRFYHIPSEKMNSKTFSTKAYK 62

Query: 49  ----------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
                                 L+ +   N++HG  GEDG + A+ E   I +    + A
Sbjct: 63  KEKELFIKQGGFFSKGFLKENKLECECVINLIHGRDGEDGKIAALFEFYSIKFIGPRLEA 122

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           S LS +K  +K    S GV      +V +   +S+  +S P +IKP + GSS+GI ++K 
Sbjct: 123 SVLSFNKELTKLYAKSVGVKTLDYTMVRKG-QNSKEKLSFPCIIKPARLGSSIGISIVKD 181

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDVTEIAVP-KSDFYSYE 203
           ++ +     +   +   + L++E++ + I+     G M +     + I  P K +F  +E
Sbjct: 182 EKDLEYA--KDVGFEFDNDLVVEEFKNNIKEYNLAGCMINDEFVFSIIEEPKKKEFLDFE 239

Query: 204 LKYSSLNST-HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
            KY S +    ++ A +  ++ ++++      +  +    + R DF    L  +++  EI
Sbjct: 240 QKYLSFSGHNELIEANLSEELKEKLKDSFKKIYNPLFKGALIRCDFFI--LDNEIYLNEI 297

Query: 263 NVQPGMTPVSIFPEM-----AAYAGYSFRELL 289
           N  PG     +F +      A     S  +++
Sbjct: 298 NPNPGSLANYLFKDFSTTLNALADQISLEKMI 329


>gi|332673460|gb|AEE70277.1| D-alanine-D-alanine ligase [Helicobacter pylori 83]
          Length = 356

 Score =  208 bits (530), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 70/314 (22%), Positives = 127/314 (40%), Gaps = 47/314 (14%)

Query: 3   VLMGGISSEREVSLSSGKACASALED---------AGFKVSQIDVD-------------- 39
           VL GG S E E+S+ S  A   AL+D                I+                
Sbjct: 14  VLFGGASFEHEISIVSTIALKEALKDRIKYFIFLDENHHFYLIEESNMHSKYFAQIKEKK 73

Query: 40  ------------RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87
                       ++  L    ++  L  N++HG  GEDG + ++LE   I +    I AS
Sbjct: 74  LPPLILTRNGLLKNSFLGAKIIELPLVINLVHGGDGEDGKLASLLEFYRIAFIGPRIEAS 133

Query: 88  ALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI---SPPYVIKPLKGGSSLGIIVI 144
            LS +K  +K      GV     +L+N     +   +   + P+++KP   GSSLG+ V+
Sbjct: 134 VLSYNKYLTKLYAKDLGVKTLDYVLLNEKNRANALNLIGFNFPFIVKPSNAGSSLGVSVV 193

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE----LTCGVMGDASLDVTEIAVPKSDFY 200
           K+++ +   L    ++ +  ++LIE ++ G++      C +  D      E    K +F 
Sbjct: 194 KEEKELIYAL--DGAFEYSKEVLIEPFIQGVKEYNLAGCKIKKDFCFSYIE-EPNKQEFL 250

Query: 201 SYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260
            ++ KY   +      A +   + ++++      +  +    + R DF    +  +V+  
Sbjct: 251 DFKQKYLDFSRNKAPKANLSNALEEQLKENFKKLYNDLFDGALIRCDFFV--IENEVYLN 308

Query: 261 EINVQPGMTPVSIF 274
           EIN  PG     +F
Sbjct: 309 EINPIPGSLANYLF 322


>gi|57237643|ref|YP_178891.1| D-alanyl-alanine synthetase A [Campylobacter jejuni RM1221]
 gi|121612276|ref|YP_001000487.1| D-alanyl-alanine synthetase A [Campylobacter jejuni subsp. jejuni
           81-176]
 gi|167005423|ref|ZP_02271181.1| D-alanyl-alanine synthetase A [Campylobacter jejuni subsp. jejuni
           81-176]
 gi|81353739|sp|Q5HUZ4|DDL_CAMJR RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|189083036|sp|A1VZE6|DDL_CAMJJ RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|57166447|gb|AAW35226.1| D-alanine--D-alanine ligase [Campylobacter jejuni RM1221]
 gi|87249415|gb|EAQ72375.1| D-alanine--D-alanine ligase [Campylobacter jejuni subsp. jejuni
           81-176]
 gi|315058252|gb|ADT72581.1| D-alanine--D-alanine ligase [Campylobacter jejuni subsp. jejuni S3]
          Length = 346

 Score =  208 bits (530), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 70/332 (21%), Positives = 136/332 (40%), Gaps = 50/332 (15%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------- 48
           A+L GG S E E+S+ S       + +   +    D +R    + +              
Sbjct: 4   AILFGGNSYEHEISIVSA-VVLKKVINQNLEFIFCDEERRFYHIPSEKMNSKTFSTKAYK 62

Query: 49  ----------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
                                 L+ +   N++HG  GEDG + A+ E   I +    + A
Sbjct: 63  KEKELFIKQGGFFSKGFLKENKLECECVINLIHGRDGEDGKIAALFEFYSIKFIGPRLEA 122

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           S LS +K  +K    S GV      +V +   +S+  +S P +IKP + GSS+GI ++K 
Sbjct: 123 SVLSFNKELTKLYAKSVGVKTLDYTMVRKG-QNSKEKLSFPCIIKPARLGSSIGISIVKD 181

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDVTEIAVP-KSDFYSYE 203
           ++ +     +   +   + L++E++ + I+     G M +     + I  P K +F  +E
Sbjct: 182 EKDLEYA--KDVGFEFDNDLVVEEFKNNIKEYNLAGCMINDEFVFSIIEEPKKKEFLDFE 239

Query: 204 LKYSSLNST-HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
            KY S +    ++ A +  ++ ++++      +  +    + R DF    L  +++  EI
Sbjct: 240 QKYLSFSGHNELIEANLSEELKEKLKDSFKKIYNPLFKGALIRCDFFI--LDNEIYLNEI 297

Query: 263 NVQPGMTPVSIFPEM-----AAYAGYSFRELL 289
           N  PG     +F +      A     S  +++
Sbjct: 298 NPNPGSLANYLFKDFSTTLNALADQISLEKMI 329


>gi|86152116|ref|ZP_01070328.1| D-alanine--D-alanine ligase [Campylobacter jejuni subsp. jejuni
           260.94]
 gi|85840901|gb|EAQ58151.1| D-alanine--D-alanine ligase [Campylobacter jejuni subsp. jejuni
           260.94]
          Length = 346

 Score =  208 bits (529), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 71/332 (21%), Positives = 136/332 (40%), Gaps = 50/332 (15%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------- 48
           A+L GG S E E+S+ S       + +   +    D +R    + +              
Sbjct: 4   AILFGGNSYEHEISIVSA-VVLKKVINQNLEFIFCDEERRFYHIPSEKMNSKTFSTKAYK 62

Query: 49  ----------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
                                 L+ +   N++HG  GEDG + A+ E   I +    + A
Sbjct: 63  KEKELFIQQGGFFSKGFLKENKLECECVINLIHGRDGEDGKIAALFEFYSIKFIGPRLEA 122

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           S LS +K  +K    S GV      ++ R   +S+  +S P +IKP + GSS+GI ++K 
Sbjct: 123 SVLSFNKELTKLYAKSVGVKTLDYTML-RKNQNSKEKLSFPCIIKPARLGSSIGISIVKD 181

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDVTEIAVP-KSDFYSYE 203
           ++ +     +   +   + L++E++ + I+     G M +     + I  P K +F  +E
Sbjct: 182 EKDLEYA--KDVGFEFDNDLVVEEFKNNIKEYNLAGCMINDEFVFSIIEEPKKKEFLDFE 239

Query: 204 LKYSSLNST-HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
            KY S +    ++ A +  ++ ++++      +  +    + R DF    L  +V+  EI
Sbjct: 240 QKYLSFSGHNELIEADLSEELKEKLKDSFKKIYNPLFKGALIRCDFFI--LDDEVYLNEI 297

Query: 263 NVQPGMTPVSIFPEM-----AAYAGYSFRELL 289
           N  PG     +F +      A     S  +++
Sbjct: 298 NPNPGSLANYLFKDFNTTLNALADQISLEKMI 329


>gi|2231987|gb|AAB62175.1| vancomycin resistance protein B [Enterococcus faecium]
          Length = 267

 Score =  208 bits (529), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 62/216 (28%), Positives = 106/216 (49%), Gaps = 9/216 (4%)

Query: 49  LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
            + D+AF VLHG  GEDG +Q + EL  IPY    I +SA  MDK  +  +  + G+ V 
Sbjct: 54  RRIDVAFPVLHGKCGEDGAIQGLFELSGIPYVGCDIQSSAACMDKSLAYILTKNAGIAVP 113

Query: 109 PSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168
              ++ +        ++ P  +KP + GSS G+  +   + +   +   ++  +  ++LI
Sbjct: 114 EFQMIEKGDKPEARTLTYPVFVKPARSGSSFGVTKVNSTEELNAAI--EAAGQYDGKILI 171

Query: 169 EQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSY---ELKYSSLNSTHVLPAKIPL 221
           EQ + G E+ C VMG+       +V +I +    F  +   E +  S N+  ++PA IP+
Sbjct: 172 EQAISGCEVGCAVMGNEDDLIVGEVDQIRLSHGIFRIHQENEPEKGSENAMIIVPADIPV 231

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
           +    VQ  A   ++ +GCRG++R D         V
Sbjct: 232 EERNRVQETAKKVYRVLGCRGLARVDLFLQEDGGIV 267


>gi|257792714|ref|YP_003183320.1| D-alanine--D-alanine ligase [Eggerthella lenta DSM 2243]
 gi|325831132|ref|ZP_08164456.1| D-ala D-ala ligase N-terminal domain protein [Eggerthella sp. HGA1]
 gi|257476611|gb|ACV56931.1| D-alanine--D-alanine ligase [Eggerthella lenta DSM 2243]
 gi|325487053|gb|EGC89499.1| D-ala D-ala ligase N-terminal domain protein [Eggerthella sp. HGA1]
          Length = 328

 Score =  208 bits (529), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 88/326 (26%), Positives = 143/326 (43%), Gaps = 38/326 (11%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+ERE+SL+S K   +ALE+AG +   +D    +   L   +PD+ FN LHG
Sbjct: 3   VAVLTGGSSTERELSLASAKNVCAALEEAGHRTVLLDASSDLVSALRVERPDVCFNALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV--------CPSIL 112
             GEDG VQ++LE + +P+  S       + DK      +++                + 
Sbjct: 63  KLGEDGTVQSLLEFVGVPFVGSPSSVCRRAWDKSSLGSEMAAYRAITGDEPTASWPQGVC 122

Query: 113 VNRFTMDSQHLI------------SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160
           + R   +S                  P  +KP  G S+ G+  +     +   +  + S+
Sbjct: 123 IAREAFESMGAATAFDLVEDRVIGGYPVAVKPAHGVSASGVRRVDSVDQLGEAVSDALSF 182

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTH--- 213
              D ++IEQ++DG+E+T  V+G      +L   EI V K  F       +         
Sbjct: 183 --DDAVIIEQWIDGVEVTVPVLGSGWDAYALPPVEI-VAKEGFCDTVACRTPGAVELFAP 239

Query: 214 VLPAKIPLD------IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPG 267
           V PA +  D      I  E++R A    +A   R ++R D ++D    +V  LE++V P 
Sbjct: 240 VRPASLSNDEADAQAIRAEIERAALEVCRAYQVRDLARVDLVWDGAQARV--LEVDVSPS 297

Query: 268 MTPVSIFPEMAAYAGYSFRELLLWMV 293
           +   S F      +G S   +L  +V
Sbjct: 298 LAESSPFSLACEASGLSLSGVLNELV 323


>gi|319957669|ref|YP_004168932.1| D-alanine/D-alanine ligase [Nitratifractor salsuginis DSM 16511]
 gi|319420073|gb|ADV47183.1| D-alanine/D-alanine ligase [Nitratifractor salsuginis DSM 16511]
          Length = 349

 Score =  207 bits (528), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 70/337 (20%), Positives = 135/337 (40%), Gaps = 56/337 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           +A+L GG S E E+S+ S      +L+    +   I VD +    L              
Sbjct: 3   IAILFGGSSYEHEISIVSAITLKKSLKRN--EPLFIFVDSAREFYLIEPEKMKSKTFSSG 60

Query: 49  ---------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81
                                      L+ D   N++HG  GEDG +  ++E   IP+  
Sbjct: 61  EYKKAKKLSLERGGFSMAGGLLGGRKPLEFDCLLNLIHGRDGEDGKIAGMMEFFRIPFIG 120

Query: 82  SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGI 141
             + AS +S  K+ +K +  + G+ V    L+ +        +  P ++KP+  GSS+G+
Sbjct: 121 PRLEASVMSYSKLNTKLLAQALGISVLEYELLRKEGPRKLSRLEYPVIVKPVHLGSSIGV 180

Query: 142 IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVP-KSDF 199
            +++  ++  LD     ++   D +++E +V+G  E        ++ +++ I  P K +F
Sbjct: 181 SIVR--EASQLDYALDVAFEFDDLVIVEPFVEGIREYNLAGCKTSAWELSLIEEPQKEEF 238

Query: 200 YSYELKYSSLNS-THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
             ++ KY   +  T V  A I   + + ++      +  +    + R DF       KV+
Sbjct: 239 LDFDKKYMDFSRDTRVQEAVIDAPLRERLETAFKNIYDPLFLGSLIRCDFFVVEE--KVY 296

Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
             EIN  PG     +F          F  ++  + ++
Sbjct: 297 LNEINPIPGSMAHYLFD--------DFEGIIERLAKN 325


>gi|153952610|ref|YP_001398281.1| D-alanyl-alanine synthetase A [Campylobacter jejuni subsp. doylei
           269.97]
 gi|189083035|sp|A7H451|DDL_CAMJD RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|152940056|gb|ABS44797.1| D-alanine--D-alanine ligase [Campylobacter jejuni subsp. doylei
           269.97]
          Length = 346

 Score =  207 bits (527), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 66/312 (21%), Positives = 126/312 (40%), Gaps = 45/312 (14%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------- 48
           A+L GG S E E+S+ S  A    +     +    D +R    + +              
Sbjct: 4   AILFGGNSYEHEISIVSAVALKKVIN-QNLEFIFCDEERRFYHIPSEKMNSKTFSTKAYK 62

Query: 49  ----------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
                                 L+ +   N++HG  GEDG + A+ E   I +    + A
Sbjct: 63  KEKELFIQQGGFFSKGFLKENKLECECVINLIHGGDGEDGKIAALFEFYSIKFIGPRLEA 122

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           S LS +K  +K    S GV      ++ +   +S+  +  P +IKP + GSS+GI ++K 
Sbjct: 123 SVLSFNKELTKLYAKSVGVKTLDYTMLRKG-QNSKEKLRFPCIIKPARLGSSIGISIVKD 181

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQY---VDGIELTCGVMGDASLDVTEIAVPKSDFYSYE 203
           ++ +     +   +   + L++E++   +    L   V+ D  +        K +F  +E
Sbjct: 182 EKDLEYA--KDVGFEFDNDLVVEEFKNNIKEYNLAGCVINDKFVFSIIEEPKKKEFLDFE 239

Query: 204 LKYSSLNST-HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
            KY S +    ++ A +  ++ ++++      +  +    + R DF    L  +V+  EI
Sbjct: 240 QKYLSFSGHNELIEANLSEELKEKLKDSFKKIYNPLFKGALIRCDFFI--LDNEVYLNEI 297

Query: 263 NVQPGMTPVSIF 274
           N  PG     +F
Sbjct: 298 NPNPGSLANYLF 309


>gi|291276693|ref|YP_003516465.1| putative D-alanine--D-alanine ligase [Helicobacter mustelae 12198]
 gi|290963887|emb|CBG39723.1| putative D-alanine--D-alanine ligase [Helicobacter mustelae 12198]
          Length = 344

 Score =  207 bits (527), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 72/314 (22%), Positives = 128/314 (40%), Gaps = 46/314 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           + +L GG S E E+S+ S     + L+        +D +     + +H            
Sbjct: 3   LCILFGGASWEHEISIVSAITLKNVLKQENLLFIFLDEEHRFYHIQSHQMQADFFAQKKH 62

Query: 49  -----------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
                                  L+ D+  N++HG  GEDG +  +L+   IPY    + 
Sbjct: 63  KSQKPLHLDRRGFFTSGFFGKNPLEFDILLNLVHGADGEDGTLAGLLDFYHIPYIGPRVE 122

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145
           AS LS +K+ +K      G+P  P + + +   + +  +  P +IKP + GSS+GI + K
Sbjct: 123 ASVLSFNKLYTKIFAKERGIPTLPFVHLTQH-QEQKIPLDFPLIIKPARLGSSIGISIAK 181

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE----LTCGVMGDASLDVTEIAVPKSDFYS 201
             QS+   L Q  ++ +   +L+E +  GI+      C + GD    + E    K +F  
Sbjct: 182 DPQSLNFALDQ--AFEYDSSVLVEPFFSGIKEYNLAGCKIQGDFVFSLIE-EPGKKEFLD 238

Query: 202 YELKYSSLNST-HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260
           +E KY   +    +  A +      ++Q+     ++      + R DF       K++  
Sbjct: 239 FEDKYLDFSRDSKIENANLSAQNVTKMQKHFEALYENCFEGALIRCDFFIHE--DKIYIN 296

Query: 261 EINVQPGMTPVSIF 274
           EIN  PG     +F
Sbjct: 297 EINPIPGSMANYLF 310


>gi|171848811|pdb|2PVP|A Chain A, Crystal Structure Of D-Alanine-D-Alanine Ligase From
           Helicobacter Pylori
 gi|171848812|pdb|2PVP|B Chain B, Crystal Structure Of D-Alanine-D-Alanine Ligase From
           Helicobacter Pylori
          Length = 367

 Score =  207 bits (527), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 72/314 (22%), Positives = 129/314 (41%), Gaps = 47/314 (14%)

Query: 3   VLMGGISSEREVSLSSGKACASALED---------AGFKVSQIDV-------------DR 40
           VL GG S E E+S+ S  A    L+D                I+               +
Sbjct: 25  VLFGGASFEHEISIVSAIALKGVLKDRIKYFIFLDENHHFYLIEESNMHSKYFAQIKEKK 84

Query: 41  SVGLVLAH-------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87
              L+L H             ++  L  N++HG  GEDG + ++LE   I +    I AS
Sbjct: 85  LPPLILTHNGLLKNSFLGAKIIELPLVINLVHGGDGEDGKLASLLEFYRIAFIGPRIEAS 144

Query: 88  ALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI---SPPYVIKPLKGGSSLGIIVI 144
            LS +K  +K      G+     +L+N     +   +   + P+++KP   GSSLG+ V+
Sbjct: 145 VLSYNKYLTKLYAKDLGIKTLDYVLLNEKNRANALDLMNFNFPFIVKPSNAGSSLGVNVV 204

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE----LTCGVMGDASLDVTEIAVPKSDFY 200
           K+++ +   L   S++ +  ++LIE ++ G++      C +  D      E    K +F 
Sbjct: 205 KEEKELIYAL--DSAFEYSKEVLIEPFIQGVKEYNLAGCKIKKDFCFSYIE-EPNKQEFL 261

Query: 201 SYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260
            ++ KY   +      A +   + ++++      +  +    I R DF    +  +V+  
Sbjct: 262 DFKQKYLDFSRNKAPKASLSNALEEQLKENFKKLYSDLFDGAIIRCDFFV--IENEVYLN 319

Query: 261 EINVQPGMTPVSIF 274
           EIN  PG     +F
Sbjct: 320 EINPIPGSLANYLF 333


>gi|66816919|gb|AAY56773.1| D-alanine-D-alanine ligase [Helicobacter pylori]
          Length = 347

 Score =  207 bits (527), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 72/314 (22%), Positives = 129/314 (41%), Gaps = 47/314 (14%)

Query: 3   VLMGGISSEREVSLSSGKACASALED---------AGFKVSQIDV-------------DR 40
           VL GG S E E+S+ S  A    L+D                I+               +
Sbjct: 5   VLFGGASFEHEISIVSAIALKGVLKDRIKYFIFLDENHHFYLIEESNMHSKYFAQIKEKK 64

Query: 41  SVGLVLAH-------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87
              L+L H             ++  L  N++HG  GEDG + ++LE   I +    I AS
Sbjct: 65  LPPLILTHNGLLKNSFLGAKIIELPLVINLVHGGDGEDGKLASLLEFYRIAFIGPRIEAS 124

Query: 88  ALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI---SPPYVIKPLKGGSSLGIIVI 144
            LS +K  +K      G+     +L+N     +   +   + P+++KP   GSSLG+ V+
Sbjct: 125 VLSYNKYLTKLYAKDLGIKTLDYVLLNEKNRANALDLMNFNFPFIVKPSNAGSSLGVNVV 184

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE----LTCGVMGDASLDVTEIAVPKSDFY 200
           K+++ +   L   S++ +  ++LIE ++ G++      C +  D      E    K +F 
Sbjct: 185 KEEKELIYAL--DSAFEYSKEVLIEPFIQGVKEYNLAGCKIKKDFCFSYIE-EPNKQEFL 241

Query: 201 SYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260
            ++ KY   +      A +   + ++++      +  +    I R DF    +  +V+  
Sbjct: 242 DFKQKYLDFSRNKAPKASLSNALEEQLKENFKKLYSDLFDGAIIRCDFFV--IENEVYLN 299

Query: 261 EINVQPGMTPVSIF 274
           EIN  PG     +F
Sbjct: 300 EINPIPGSLANYLF 313


>gi|188527419|ref|YP_001910106.1| D-alanyl-alanine synthetase A [Helicobacter pylori Shi470]
 gi|229485957|sp|B2UT94|DDL_HELPS RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|188143659|gb|ACD48076.1| D-alanyl-alanine synthetase A [Helicobacter pylori Shi470]
          Length = 347

 Score =  206 bits (526), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 72/314 (22%), Positives = 128/314 (40%), Gaps = 47/314 (14%)

Query: 3   VLMGGISSEREVSLSSGKACASALE---------DAGFKVSQIDVD-------------- 39
           VL GG S E E+S+ S  A   AL+         D       I+                
Sbjct: 5   VLFGGASFEHEISIVSAIALKEALKGRIKYFIFLDENHHFYLIEESNMHSKYFAQIKEKK 64

Query: 40  ------------RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87
                       ++  L    ++  L  N++HG  GEDG + ++LE   I +   GI AS
Sbjct: 65  LPPLILTCNGLLKNSFLGAKIIELPLVINLVHGGDGEDGKLASLLEFYRIAFIGPGIEAS 124

Query: 88  ALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI---SPPYVIKPLKGGSSLGIIVI 144
            LS +K  +K      GV     +L+N     +   +   + P++IKP   GSSLG+ V+
Sbjct: 125 VLSYNKYLTKLYAKDLGVKALDHVLLNEKNRANALNLIGFNFPFIIKPSNAGSSLGVSVV 184

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE----LTCGVMGDASLDVTEIAVPKSDFY 200
           K+++ +   L    ++ +  ++LIE ++ G++      C +  D      E    K +F 
Sbjct: 185 KEEKELIYAL--DGAFEYSKEILIEPFIQGVKEYNLAGCKIKKDFCFSYVE-EPNKQEFL 241

Query: 201 SYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260
            ++ KY   +      A +   + ++++      +  +    + R DF    +  +V+  
Sbjct: 242 DFKQKYLDFSRNKAPKANLSNALEEQLKENFKKLYNDLFDGALIRCDFFV--IENEVYLN 299

Query: 261 EINVQPGMTPVSIF 274
           EIN  PG     +F
Sbjct: 300 EINPIPGSLANYLF 313


>gi|317012549|gb|ADU83157.1| D-alanyl-alanine synthetase A [Helicobacter pylori Lithuania75]
          Length = 347

 Score =  206 bits (526), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 73/314 (23%), Positives = 130/314 (41%), Gaps = 47/314 (14%)

Query: 3   VLMGGISSEREVSLSSGKACASALED---------AGFKVSQIDV-------------DR 40
           VL GG S E E+S+ S  A    L+D                I+               +
Sbjct: 5   VLFGGASFEHEISIVSAIALKGVLKDRIKYFIFLDENHHFYLIEESNMHSKYFAQIKEKK 64

Query: 41  SVGLVLAH-------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87
              L+L H             ++  L  N++HG  GEDG + ++LE   I +    + AS
Sbjct: 65  LPPLILTHNGLLKNSFLGAKIIELPLVINLVHGGDGEDGKLASLLEFYRIAFIGPRVEAS 124

Query: 88  ALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI---SPPYVIKPLKGGSSLGIIVI 144
            LS +K  +K      G+     +L+N     +   +   + P++IKP   GSSLG+ V+
Sbjct: 125 VLSYNKYLTKLYAKDLGIKALDHVLLNEKNRANALNLIGFNFPFIIKPNSAGSSLGVNVV 184

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE----LTCGVMGDASLDVTEIAVPKSDFY 200
           K+++ +   L   S++ +  ++LIE ++ G++      C +  D      E    K +F 
Sbjct: 185 KEEKELIYAL--DSAFEYSKEVLIEPFIQGVKEYNLAGCKIKKDFCFSYVE-EPNKQEFL 241

Query: 201 SYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260
            ++ KY   + T    A +   + ++++      +  +    I R DF    +  +V+  
Sbjct: 242 DFKQKYLDFSRTKAPKANLSNALEEQLKENFKKLYNDLFDGAIIRCDFFV--IENEVYLN 299

Query: 261 EINVQPGMTPVSIF 274
           EIN  PG     +F
Sbjct: 300 EINPIPGSLAHYLF 313


>gi|317489001|ref|ZP_07947528.1| D-alanine-D-alanine ligase [Eggerthella sp. 1_3_56FAA]
 gi|316911868|gb|EFV33450.1| D-alanine-D-alanine ligase [Eggerthella sp. 1_3_56FAA]
          Length = 328

 Score =  206 bits (526), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 88/326 (26%), Positives = 143/326 (43%), Gaps = 38/326 (11%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+ERE+SL+S K   +ALE+AG +   +D    +   L   +PD+ FN LHG
Sbjct: 3   VAVLTGGSSTERELSLASAKNVCAALEEAGHRKVLLDASSDLVSALRVERPDVCFNALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV--------CPSIL 112
             GEDG VQ++LE + +P+  S       + DK      +++                + 
Sbjct: 63  KLGEDGTVQSLLEFVGVPFVGSPSSVCRRAWDKSSLGSEMAAYRAITGDEPTASWPQGVC 122

Query: 113 VNRFTMDSQHLI------------SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160
           + R   +S                  P  +KP  G S+ G+  +     +   +  + S+
Sbjct: 123 IAREAFESMGAATAFDLVEDRVIGGYPVAVKPAHGVSASGVRRVDSVDQLGEAVSDALSF 182

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTH--- 213
              D ++IEQ++DG+E+T  V+G      +L   EI V K  F       +         
Sbjct: 183 --DDAVIIEQWIDGVEVTVPVLGSGWDAYALPPVEI-VAKEGFCDTVACRTPGAVELFAP 239

Query: 214 VLPAKIPLD------IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPG 267
           V PA +  D      I  E++R A    +A   R ++R D ++D    +V  LE++V P 
Sbjct: 240 VRPASLSNDEADAQAIRAEIERAALEVCRAYQVRDLARVDLVWDGAQARV--LEVDVSPS 297

Query: 268 MTPVSIFPEMAAYAGYSFRELLLWMV 293
           +   S F      +G S   +L  +V
Sbjct: 298 LAESSPFSLACEASGLSLSGVLNELV 323


>gi|308063477|gb|ADO05364.1| D-alanyl-alanine synthetase A [Helicobacter pylori Sat464]
          Length = 347

 Score =  206 bits (526), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 72/314 (22%), Positives = 127/314 (40%), Gaps = 47/314 (14%)

Query: 3   VLMGGISSEREVSLSSGKACASALE---------DAGFKVSQID---VDRSVGLVLAHLK 50
           VL GG S E E+S+ S  A   AL+         D       I+   +       +   K
Sbjct: 5   VLFGGASFEHEISIVSAIALKEALKDRIKYFIFLDENHHFYLIEESNMHSKYFAQIKEKK 64

Query: 51  -PDLAF----------------------NVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87
            P L F                      N++HG  GEDG + ++LE   I +    I AS
Sbjct: 65  LPPLIFTRNGLLKNSFLGAKIIELPLVINLVHGGDGEDGKLASLLEFYRIAFIGPRIEAS 124

Query: 88  ALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI---SPPYVIKPLKGGSSLGIIVI 144
            LS +K  +K      GV     +L+N     +   +   + P+++KP   GSSLG+ V+
Sbjct: 125 VLSYNKYLTKLYAKDLGVKALDHVLLNEKNRANALNLIGFNFPFIVKPSNAGSSLGVSVV 184

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE----LTCGVMGDASLDVTEIAVPKSDFY 200
           K+++ +   L    ++ +  ++LIE ++ G++      C +  D      E    K +F 
Sbjct: 185 KEEKELIYAL--DGAFEYSKEILIEPFIQGVKEYNLAGCKIKKDFCFSYVE-EPNKQEFL 241

Query: 201 SYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260
            ++ KY   +      A +   + ++++      +  +    + R DF    +  +V+  
Sbjct: 242 DFKQKYLDFSRNKAPKANLSNALEEQLKENFKKLYNDLFDGALIRCDFFV--IENEVYLN 299

Query: 261 EINVQPGMTPVSIF 274
           EIN  PG     +F
Sbjct: 300 EINPIPGSLANYLF 313


>gi|296272621|ref|YP_003655252.1| D-alanine/D-alanine ligase [Arcobacter nitrofigilis DSM 7299]
 gi|296096795|gb|ADG92745.1| D-alanine/D-alanine ligase [Arcobacter nitrofigilis DSM 7299]
          Length = 344

 Score =  206 bits (526), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 66/312 (21%), Positives = 127/312 (40%), Gaps = 44/312 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDA------------------------------- 29
           +A++ GG S E E+S+ S  A    ++                                 
Sbjct: 3   IAIVFGGSSYEHEISIVSAIAMKDVIKSELEYIFLDENREFYHIPTKTIKSKLFSTGEYK 62

Query: 30  ---GFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
                 + +    +       +++ D+  N++HG  GEDG V ++ E  +I Y    + A
Sbjct: 63  KCDKLNIKKGGFSKKAMFGEKNVEFDIVLNLIHGGDGEDGTVASLFEFFDIKYIGPRVGA 122

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            ++S +K  +K   SS G+   P     +F  D   +   P ++KP+  GSS+G+ ++K 
Sbjct: 123 CSVSFNKFLTKGYASSLGIKTIPYKYFTKF--DEISVDEFPVIVKPVTLGSSIGVSIVKT 180

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDVTEIAVP-KSDFYSYE 203
            + +   L    ++   + +LIE +V  I+     G      +  + I  P K+DF  ++
Sbjct: 181 KEELSYALDV--AFEFDNAVLIETFVPNIKEYNLAGYKIGNEIKYSIIEEPQKADFLDFD 238

Query: 204 LKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
            KY     +  V  A I  ++ +++++     +       + R DF    +  +V+  EI
Sbjct: 239 KKYLDFARTERVSVANISDELKEKLKKAFATIYNTTFNDAMIRCDFFV--IDDEVYLNEI 296

Query: 263 NVQPGMTPVSIF 274
           N  PG     +F
Sbjct: 297 NPIPGSMANYLF 308


>gi|308184522|ref|YP_003928655.1| D-alanyl-alanine synthetase A [Helicobacter pylori SJM180]
 gi|308060442|gb|ADO02338.1| D-alanyl-alanine synthetase A [Helicobacter pylori SJM180]
          Length = 347

 Score =  206 bits (526), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 73/314 (23%), Positives = 126/314 (40%), Gaps = 47/314 (14%)

Query: 3   VLMGGISSEREVSLSSG---KACAS------ALEDAGFKVSQIDVD-------------- 39
           VL GG S E E+S+ S    K             D       I+                
Sbjct: 5   VLFGGASFEHEISIVSAIVLKGVLKDRIKYFIFLDENHHFYLIEESNMHSKYFAQIKEKK 64

Query: 40  ------------RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87
                       ++  L    ++  L  N++HG  GEDG + ++LE   I +    I AS
Sbjct: 65  LPPLMLTHNGLLKNSFLGAKIIELPLVINLVHGGDGEDGKLASLLEFYRIAFIGPRIEAS 124

Query: 88  ALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI---SPPYVIKPLKGGSSLGIIVI 144
            LS +K  +K      GV     IL+N     +   +   + P+++KP   GSSLG+ V+
Sbjct: 125 VLSYNKYLTKLYAKDLGVKTLDYILLNEKNRANALDLIGFNFPFIVKPSNAGSSLGVNVV 184

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE----LTCGVMGDASLDVTEIAVPKSDFY 200
           K+++ +   L   S++ +  ++LIE ++ G++      C +  D      E    K +F 
Sbjct: 185 KEEKELNYAL--DSAFEYSKEVLIEPFIQGVKEYNLAGCKIKKDFCFSYIE-EPNKQEFL 241

Query: 201 SYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260
            ++ KY   + T    A +   + K+++      +  +    I R DF    +  +V+  
Sbjct: 242 DFKQKYLDFSRTKAPKANLSNALEKQLKENFKKLYNDLFDGAIIRCDFFV--IENEVYLN 299

Query: 261 EINVQPGMTPVSIF 274
           EIN  PG     +F
Sbjct: 300 EINPIPGSLANYLF 313


>gi|51921843|gb|AAU14063.1| VanB [Enterococcus faecalis]
          Length = 271

 Score =  206 bits (526), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 61/213 (28%), Positives = 105/213 (49%), Gaps = 9/213 (4%)

Query: 49  LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
            + D+AF VLHG  GEDG +Q + EL  IPY    I +SA  MDK  +  +  + G+ V 
Sbjct: 59  RRIDVAFPVLHGKCGEDGAIQGLFELSGIPYVGCDIQSSAACMDKSLAYILTKNAGIAVP 118

Query: 109 PSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168
              ++ +        ++ P  +KP + GSS G+  +   + +   +   ++  +  ++LI
Sbjct: 119 EFQMIEKGDKPEARTLTYPVFVKPARSGSSFGVTKVNSTEELNAAI--EAAGQYDGKILI 176

Query: 169 EQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSY---ELKYSSLNSTHVLPAKIPL 221
           EQ + G E+ C VMG+       +V +I +    F  +   E +  S N+  ++PA IP+
Sbjct: 177 EQAISGCEVGCAVMGNEDDLIVGEVDQIRLSHGIFRIHQENEPEKGSENAMIIVPADIPV 236

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
           +    VQ  A   ++ +GCRG++R D       
Sbjct: 237 EERNRVQETAKKVYRVLGCRGLARVDLFLQEDG 269


>gi|217033771|ref|ZP_03439197.1| hypothetical protein HP9810_7g52 [Helicobacter pylori 98-10]
 gi|216943820|gb|EEC23260.1| hypothetical protein HP9810_7g52 [Helicobacter pylori 98-10]
          Length = 347

 Score =  206 bits (525), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 68/314 (21%), Positives = 125/314 (39%), Gaps = 47/314 (14%)

Query: 3   VLMGGISSEREVSLSSGKACASALED---------AGFKVSQIDVD-------------- 39
           VL GG S E E+S+ S       L+D                I+                
Sbjct: 5   VLFGGASFEHEISIVSAIVLKEVLKDRIKYFIFLDENHHFYLIEESNMHSKYFAQIKEKK 64

Query: 40  ------------RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87
                       ++  L    ++  L  N++HG  GEDG + ++LE   I +    I AS
Sbjct: 65  LPPLILMCNGLLKNSFLGTKIIELPLVINLVHGGDGEDGKLASLLEFYRIAFIGPRIEAS 124

Query: 88  ALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI---SPPYVIKPLKGGSSLGIIVI 144
            LS +K  +K      GV     +L+N     +   +   + P+++KP   GSSLG+ V+
Sbjct: 125 VLSYNKYLTKLYAKDLGVKTLDYVLLNEKNRANALNLIGFNFPFIVKPSNAGSSLGVSVV 184

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE----LTCGVMGDASLDVTEIAVPKSDFY 200
           K+++ +   L    ++ +  ++LIE ++ G++      C +  D      E    K +F 
Sbjct: 185 KEEKELIYAL--DGAFEYSKEVLIEPFIQGVKEYNLAGCKIKKDFCFSYIE-EPNKQEFL 241

Query: 201 SYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260
            ++ KY   +      A +   + ++++      +  +    + R DF    +  +V+  
Sbjct: 242 DFKQKYLDFSRNKAPKANLSNALEEQLKENFKKLYNDLFDGALIRCDFFV--IENEVYLN 299

Query: 261 EINVQPGMTPVSIF 274
           EIN  PG     +F
Sbjct: 300 EINPIPGSLANYLF 313


>gi|109947256|ref|YP_664484.1| D-alanyl-alanine synthetase A [Helicobacter acinonychis str.
           Sheeba]
 gi|123066260|sp|Q17XZ1|DDL_HELAH RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|109714477|emb|CAJ99485.1| D-alanine-D-alanine ligase [Helicobacter acinonychis str. Sheeba]
          Length = 350

 Score =  206 bits (525), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 72/316 (22%), Positives = 128/316 (40%), Gaps = 49/316 (15%)

Query: 3   VLMGGISSEREVSLSSGKACASALED---------AGFKVSQIDVD-------------- 39
           VL GG S E E+S+ S  A    L+D                I+                
Sbjct: 6   VLFGGASFEHEISIVSAIALKEVLKDQIKYFIFLDENHHFYLIEASNMHSKYFAQIKEKK 65

Query: 40  ------------RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87
                       ++  L    ++  L  N++HG  GEDG + ++LE   I +  S + AS
Sbjct: 66  LPPLMLTHNGLLKNSFLGAKTIELPLMINLVHGGDGEDGKLASLLEFYRIAFIGSRVEAS 125

Query: 88  ALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI-----SPPYVIKPLKGGSSLGII 142
            LS +K  +K    + GV     IL+N     +   +     + P+++KP   GSSLG+ 
Sbjct: 126 VLSYNKHLTKLYAKNLGVKTLDCILLNEKNRANALDLIKPSFNFPFIVKPNNAGSSLGVS 185

Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE----LTCGVMGDASLDVTEIAVPKSD 198
           V+K+++ +        ++ +  ++LIE ++  ++      C +  D      E    K +
Sbjct: 186 VVKEEKEL--AYALDGAFEYSKEVLIEPFIQRVKEYNLAGCKIKEDFCFSYVE-EPNKQE 242

Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
           F  ++ KY   + T    A IP  + ++++      +  +    I R DF    +  +V+
Sbjct: 243 FLDFKQKYLDFSRTKAPKANIPNALEEQLRENFKKLYNDLFDGAIIRCDFFV--IDNEVY 300

Query: 259 WLEINVQPGMTPVSIF 274
             EIN  PG     +F
Sbjct: 301 LNEINPIPGSLANYLF 316


>gi|317009252|gb|ADU79832.1| D-alanyl-alanine synthetase A [Helicobacter pylori India7]
          Length = 347

 Score =  206 bits (525), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 73/314 (23%), Positives = 129/314 (41%), Gaps = 47/314 (14%)

Query: 3   VLMGGISSEREVSLSSGKACASALED---------AGFKVSQIDV-------------DR 40
           VL GG S E E+S+ S  A    L+D                I+               +
Sbjct: 5   VLFGGASFEHEISIVSAIALKGVLKDRIKYFIFLDENHHFYLIEESNMHSKYFAQIKEKK 64

Query: 41  SVGLVLAH-------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87
              L+LAH             ++  L  N++HG  GEDG + ++LE   I +    I AS
Sbjct: 65  LPPLILAHNGLLKNSFLGTKIIELPLVINLVHGGDGEDGKLASLLEFYRIAFIGPRIEAS 124

Query: 88  ALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI---SPPYVIKPLKGGSSLGIIVI 144
            LS +K  +K      GV     +L+N     +   +   + P+++KP   GSSLG+ V+
Sbjct: 125 VLSYNKYLTKLYAKDLGVKTLDCVLLNEKNRANALNLMNFNFPFIVKPNSAGSSLGVSVV 184

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE----LTCGVMGDASLDVTEIAVPKSDFY 200
           K+++ +   L    ++ +  ++LIE ++ G++      C +  D      E    K +F 
Sbjct: 185 KEEKELIYAL--DGAFEYSKEVLIEPFIQGVKEYNLAGCKIKKDFCFSYVE-EPNKQEFL 241

Query: 201 SYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260
            ++ KY   +      A +   + ++++      +  +    I R DF    +  +V+  
Sbjct: 242 DFKQKYLDFSRNKAPKANLSNALEEQLKENFKKLYNDLFDGAIIRCDFFV--IENEVYLN 299

Query: 261 EINVQPGMTPVSIF 274
           EIN  PG     +F
Sbjct: 300 EINPIPGSLANYLF 313


>gi|283957219|ref|ZP_06374681.1| D-alanine--D-alanine ligase [Campylobacter jejuni subsp. jejuni
           1336]
 gi|283791291|gb|EFC30098.1| D-alanine--D-alanine ligase [Campylobacter jejuni subsp. jejuni
           1336]
          Length = 346

 Score =  206 bits (525), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 71/332 (21%), Positives = 136/332 (40%), Gaps = 50/332 (15%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------- 48
           A+L GG S E E+S+ S       + +   +    D +R    + +              
Sbjct: 4   AILFGGNSYEHEISIVSA-VVLKKVINQNLEFIFCDEERRFYHIPSEKMNSKTFSTKAYK 62

Query: 49  ----------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
                                 L+ +   N++HG  GEDG + A+ E   I +    + A
Sbjct: 63  KEKELFVKQGGFFSKGFLKENKLECECMINLIHGRDGEDGKIAALFEFYSIKFIGPRLEA 122

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           S LS +K  +K    S GV      ++ R   +S+  +S P +IKP + GSS+GI ++K 
Sbjct: 123 SVLSFNKELTKLYAKSVGVKTLDYTML-RKNQNSKEKLSFPCIIKPARLGSSIGISIVKD 181

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDVTEIAVP-KSDFYSYE 203
           ++ +     +   +   + L++E++ + I+     G M +     + I  P K +F  +E
Sbjct: 182 EKDLEYA--KDVGFEFDNDLVVEEFKNNIKEYNLAGCMINDEFVFSIIEEPKKKEFLDFE 239

Query: 204 LKYSSLNST-HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
            KY S +    ++ A +  ++ ++++      +  +    + R DF    L  +V+  EI
Sbjct: 240 QKYLSFSGHNELIEADLSEELKEKLKDSFKKIYNPLFKGALIRCDFFI--LDNEVYLNEI 297

Query: 263 NVQPGMTPVSIFPEM-----AAYAGYSFRELL 289
           N  PG     +F +      A     S  +++
Sbjct: 298 NPNPGSLANYLFKDFNTTLNALADQISLEKMI 329


>gi|148926964|ref|ZP_01810641.1| putative D-alanine--D-alanine ligase [Campylobacter jejuni subsp.
           jejuni CG8486]
 gi|145845048|gb|EDK22145.1| putative D-alanine--D-alanine ligase [Campylobacter jejuni subsp.
           jejuni CG8486]
          Length = 346

 Score =  206 bits (524), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 69/332 (20%), Positives = 136/332 (40%), Gaps = 50/332 (15%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------- 48
           A+L GG S E E+S+ S       + +   +    D +R    + +              
Sbjct: 4   AILFGGNSYEHEISIVSA-VVLKKVINQNLEFIFCDEERRFYHIPSEKMNSKTFSTKAYK 62

Query: 49  ----------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
                                 L+ +   N++HG  GEDG + A+ E   I +    + A
Sbjct: 63  KEKELFIKQGGFFSKGFLKENKLECECVINLIHGRDGEDGKIAALFEFYSIKFIGPRLEA 122

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           S LS +K  +K    S GV      ++ R   +S+  ++ P +IKP + GSS+GI ++K 
Sbjct: 123 SVLSFNKELTKLYAKSVGVKTLDCTML-RKNQNSKEKLNFPCIIKPARLGSSIGISIVKD 181

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDVTEIAVP-KSDFYSYE 203
           ++ +     +   +   + L++E++ + I+     G M +     + I  P K +F  +E
Sbjct: 182 EKDLEYA--KDVGFEFDNDLVVEEFKNNIKEYNLAGCMINDEFVFSIIEEPKKKEFLDFE 239

Query: 204 LKYSSLNST-HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
            KY S +    ++ A +  ++ ++++      +  +    + R DF    L  +++  EI
Sbjct: 240 QKYLSFSGHNELIEADLSEELKEKLKDSFKKIYNPLFKGALIRCDFFI--LDNEIYLNEI 297

Query: 263 NVQPGMTPVSIFPEM-----AAYAGYSFRELL 289
           N  PG     +F +      A     S  +++
Sbjct: 298 NPNPGSLANYLFKDFNTTLNALADQISLEKMI 329


>gi|254779285|ref|YP_003057390.1| D-alanyl-alanine synthetase A [Helicobacter pylori B38]
 gi|254001196|emb|CAX29162.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)
           (D-Ala-D-Ala ligase) [Helicobacter pylori B38]
          Length = 349

 Score =  206 bits (524), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 73/314 (23%), Positives = 128/314 (40%), Gaps = 47/314 (14%)

Query: 3   VLMGGISSEREVSLSSGKACASALED---------AGFKVSQIDV-------------DR 40
           VL GG S E E+S+ S  A    L+D                I+               +
Sbjct: 7   VLFGGASFEHEISVVSAIALKGVLKDRIKYFIFLDENHHFYLIEESNMHSKYFAQIKEKK 66

Query: 41  SVGLVLAH-------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87
              L+L H             ++  L  N++HG  GEDG + ++LE   I +    I AS
Sbjct: 67  LPPLILTHNGLLKNSFLGTKIIELPLVINLVHGGDGEDGKLASLLEFYRIAFIGPRIEAS 126

Query: 88  ALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI---SPPYVIKPLKGGSSLGIIVI 144
            LS +K  +K      GV      L+N     +   +   + P+++KP   GSSLG+ V+
Sbjct: 127 VLSYNKYLTKLYAKDLGVKTLDYALLNEKNRANALDLIGFNFPFIVKPSNAGSSLGVSVV 186

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE----LTCGVMGDASLDVTEIAVPKSDFY 200
           K+++ +   L   S++ +  ++LIE ++ G++      C +  D      E    K +F 
Sbjct: 187 KEEKELIYAL--DSAFEYSKEVLIEPFIQGVKEYNLAGCKIKKDFCFSYVE-EPNKQEFL 243

Query: 201 SYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260
            ++ KY   +      A +   + ++++      +  +    I R DF    +  +V+  
Sbjct: 244 DFKQKYLDFSRNKAPKANLSNALEEQLKENFKKLYNDLFDGAIIRCDFFV--IENEVYLN 301

Query: 261 EINVQPGMTPVSIF 274
           EIN  PG     +F
Sbjct: 302 EINPIPGSLANYLF 315


>gi|320160017|ref|YP_004173241.1| putative D-alanine--D-alanine ligase [Anaerolinea thermophila
           UNI-1]
 gi|319993870|dbj|BAJ62641.1| putative D-alanine--D-alanine ligase [Anaerolinea thermophila
           UNI-1]
          Length = 400

 Score =  205 bits (523), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 81/305 (26%), Positives = 134/305 (43%), Gaps = 33/305 (10%)

Query: 20  KACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFG--EDGLVQAILELLEI 77
           +A  SA+E  G     +  D ++   L   +PD+ FN+  G  G   +  V A+LE+L I
Sbjct: 62  EAIQSAIESDGHTTRFLSADHTLLDSLREYQPDICFNIAEGIIGDAREAQVPALLEMLGI 121

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGS 137
           PYT S +LA+AL +DK  +K++  + G+P              +  +S P  +KP + G+
Sbjct: 122 PYTASRVLANALGLDKTMTKRIWRNLGIPTASFQEFITGDEPLEADLSFPLFVKPAREGT 181

Query: 138 SLGI---IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS-------- 186
            +G+    ++  +  +   +       +    L+E Y+ G E T GV+G A         
Sbjct: 182 GMGMDEGSIVYNENQLRRRVKWVIE-AYHQPALVETYLPGREFTVGVLGRADARRWSPKP 240

Query: 187 ----------LDVTEIAVPKS---DFYSYELKYSSLNST----HVLPAKIPLDIYKEVQR 229
                       + E+    +     Y Y  K            + PA++  D+ +++  
Sbjct: 241 HLYRADGFHRFPILEVDNSNTVTPGVYGYAAKTLHPGEEGVPGFICPAQVEPDLAEKLWT 300

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP-VSIFPEMAAYAGYSFREL 288
           LA  AH AIG   +SR D   D        LEIN  PG+TP  S    +A   G S+R+L
Sbjct: 301 LAIRAHNAIGALDVSRVDVRLDAHGNPR-LLEINTLPGLTPGFSDLCVIAQAEGLSYRDL 359

Query: 289 LLWMV 293
           +L ++
Sbjct: 360 ILEIL 364


>gi|283954371|ref|ZP_06371892.1| LOW QUALITY PROTEIN: D-alanine--D-alanine ligase [Campylobacter
           jejuni subsp. jejuni 414]
 gi|283794170|gb|EFC32918.1| LOW QUALITY PROTEIN: D-alanine--D-alanine ligase [Campylobacter
           jejuni subsp. jejuni 414]
          Length = 346

 Score =  205 bits (523), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 71/332 (21%), Positives = 132/332 (39%), Gaps = 50/332 (15%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------- 48
           A+L GG S E E+S+ S       + +   +    D +R    +                
Sbjct: 4   AILFGGNSYEHEISIVS-SVVLKKVINQNLEFIFCDEERRFYHIPDEKMNSKTFNTKAYK 62

Query: 49  ----------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
                                 L+ D   N++HG  GEDG + A+ E   I +    + A
Sbjct: 63  KEKELFIKQGGFFSKGFLKENKLECDCVINLIHGRDGEDGKIAALFEFYSIKFIGPRLEA 122

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           SALS +K  +K    S GV      ++ +   + +  +  P +IKP + GSS+GI ++K 
Sbjct: 123 SALSFNKELTKLYAKSIGVKTLDYTMLRKG-QNFKEKLIFPCIIKPARLGSSIGISIVKD 181

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDVTEIAVP-KSDFYSYE 203
           ++ +     +   +   + LL+E++   I+     G M +     + I  P K +F  +E
Sbjct: 182 EKDLEYA--KDVGFEFDNDLLVEEFKSDIKEYNLAGCMINDEFVFSIIEEPKKKEFLDFE 239

Query: 204 LKYSSLNST-HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
            KY S +    ++ A +  ++  +++      +  +    + R DF    L  +V+  EI
Sbjct: 240 QKYLSFSGHNELIEADLGEELKTKLKDNFKKIYNPLFKGALIRCDFFV--LDNEVYLNEI 297

Query: 263 NVQPGMTPVSIFPEM-----AAYAGYSFRELL 289
           N  PG     +F +      A     S  +++
Sbjct: 298 NPNPGSLANYLFKDFNTTLNALADQISLEKMI 329


>gi|13507078|gb|AAK28428.1|AF251259_1 D-alanine-D-X ligase VanD4 [Enterococcus faecium]
          Length = 210

 Score =  205 bits (523), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 55/213 (25%), Positives = 107/213 (50%), Gaps = 10/213 (4%)

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
           EDG +Q +LEL  IPY    I +S + MDK  +  VV + G+ V    ++ +        
Sbjct: 1   EDGCIQGLLELSGIPYVGCDIQSSVICMDKSLAYMVVKNAGIEVPGFRVLQKGDSLEAET 60

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           +S P  +KP + GSS G+  + + + +   + ++    +  ++L+E+ V G E+ C ++G
Sbjct: 61  LSYPVFVKPARSGSSFGVNKVCRAEELQAAVTEAG--KYDSKILVEEAVSGSEVGCAILG 118

Query: 184 DA----SLDVTEIAVPKSDFYSY---ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +     + +V +I +    F  +   + +  S N+   +PA +P ++ +++Q  A   ++
Sbjct: 119 NGNDLITGEVDQIELKHGFFKIHQEAQPEKGSENAVIRVPAALPDEVREQIQETAKKIYR 178

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
            +GCRG++R D         +   E+N  PG T
Sbjct: 179 VLGCRGLARIDLFLRE-DGSIVLNEVNTMPGFT 210


>gi|15611742|ref|NP_223393.1| D-alanyl-alanine synthetase A [Helicobacter pylori J99]
 gi|6919861|sp|Q9ZLA5|DDL_HELPJ RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|4155237|gb|AAD06259.1| D-ALANINE--D-ALANINE LIGASE [Helicobacter pylori J99]
          Length = 347

 Score =  205 bits (522), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 72/314 (22%), Positives = 129/314 (41%), Gaps = 47/314 (14%)

Query: 3   VLMGGISSEREVSLSSGKACASALED---------AGFKVSQIDV-------------DR 40
           VL GG S E E+S+ S  A    L+D                I+               +
Sbjct: 5   VLFGGASFEHEISIVSAIALKGVLKDRIKYFIFLDENHYFYLIEESNMHSKYFAQIKEKK 64

Query: 41  SVGLVLAH-------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87
              L+L H             ++  L  N++HG  GEDG + ++LE   I +    + AS
Sbjct: 65  LPPLILTHNGLLKNSFLGAKIIELPLVINLVHGGDGEDGKLASLLEFYRIAFIGPRVEAS 124

Query: 88  ALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI---SPPYVIKPLKGGSSLGIIVI 144
            LS +K  +K      GV     +L+N     +   +   + P+++KP   GSSLG+ V+
Sbjct: 125 VLSYNKYLTKLYAKDLGVKALDYVLLNEKNRANALDLIGFNFPFIVKPSNAGSSLGVNVV 184

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE----LTCGVMGDASLDVTEIAVPKSDFY 200
           K+++ +   L   S++ +  ++LIE ++ G++      C +         E    K +F 
Sbjct: 185 KEEKELIYAL--DSAFEYSKEVLIEPFIQGVKEYNLAGCKIKKGFCFSYVE-EPNKQEFL 241

Query: 201 SYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260
            ++ KY   + T    A +   + ++++      +  +    I R DF    +  +V+  
Sbjct: 242 DFKQKYLDFSRTKAPKANLSNALEEQLKENFKKLYNDLFDGAIIRCDFFV--IENEVYLN 299

Query: 261 EINVQPGMTPVSIF 274
           EIN  PG     +F
Sbjct: 300 EINPIPGSLANYLF 313


>gi|317177433|dbj|BAJ55222.1| D-alanyl-alanine synthetase A [Helicobacter pylori F16]
          Length = 347

 Score =  205 bits (522), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 75/314 (23%), Positives = 132/314 (42%), Gaps = 47/314 (14%)

Query: 3   VLMGGISSEREVSLSSGKACASALED---------AGFKVSQIDV-------------DR 40
           VL GG S E E+S+ S  A   AL+D                I+               +
Sbjct: 5   VLFGGASFEYEISIVSAIALKEALKDRIKYFIFLDENHHFYLIEESNMHSKYFAQIKEKK 64

Query: 41  SVGLVLAH-------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87
              L+L H             ++  L  N++HG  GEDG + ++LE   I +    I AS
Sbjct: 65  LPPLILTHNGLLKSSFLGAKTIELPLVINLVHGGDGEDGKLASLLEFYRIAFIGPRIEAS 124

Query: 88  ALSMDKMRSKQVVSSCGVPVCPSILVN-RFTMDSQHLIS--PPYVIKPLKGGSSLGIIVI 144
            LS +K  +K      GV     +L+N +   ++ +LI    P++IKP   GSSLG+ V+
Sbjct: 125 VLSYNKYLTKLYAKDLGVKALDYVLLNEKNCANALNLIGFNFPFIIKPSNAGSSLGVSVV 184

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE----LTCGVMGDASLDVTEIAVPKSDFY 200
           K+++ +   L    ++ +  ++LIE ++ G++      C +  D      E    K +F 
Sbjct: 185 KEEKELIYAL--DGAFEYSKEVLIEPFIQGVKEYNLAGCKIKKDFCFSYVE-EPNKQEFL 241

Query: 201 SYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260
            ++ KY   +      A +   + ++++      +  +    + R DF    +  +V+  
Sbjct: 242 DFKQKYLDFSRNKAPKANLSSALEEQLKENFKKLYNDLFDGALIRCDFFV--IENEVYLN 299

Query: 261 EINVQPGMTPVSIF 274
           EIN  PG     +F
Sbjct: 300 EINPIPGSLANYLF 313


>gi|290646|gb|AAA24785.1| vanB2 ORF [Enterococcus faecalis]
          Length = 210

 Score =  205 bits (522), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 58/213 (27%), Positives = 102/213 (47%), Gaps = 10/213 (4%)

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
           EDG +Q + EL  IPY    I +SA  MDK  +  +  + G+ V    ++++        
Sbjct: 1   EDGCIQGLFELSGIPYVGCDIQSSAACMDKSLAYILTKNAGIAVPEFQMIDKGDKPEAGA 60

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           ++ P  +KP + GSS G+  +   + +   +   ++  +  ++LIEQ + G E+ C VMG
Sbjct: 61  LTYPVFVKPARSGSSFGVTKVNGTEELNAAI--EAAGQYDGKILIEQAISGCEVGCAVMG 118

Query: 184 DA----SLDVTEIAVPKSDFYSY---ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +       +V +I +    F  +   E +  S N+   +PA IP++    VQ  A   ++
Sbjct: 119 NEDDLIVGEVDQIRLSHGIFRIHQENEPEKGSENAMITVPADIPVEERNRVQETAKKVYR 178

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
            +GCRG++R D         +   E+N  PG T
Sbjct: 179 VLGCRGLARVDLFLQE-DGGIVLNEVNTLPGFT 210


>gi|189083033|sp|A8Z6L3|DDL_CAMC1 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|158604979|gb|ABW74793.1| D-alanine--D-alanine ligase (D-alanylalanine
           synthetase)(D-Ala-D-Ala ligase) [Campylobacter concisus
           13826]
          Length = 346

 Score =  204 bits (521), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 71/313 (22%), Positives = 125/313 (39%), Gaps = 47/313 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           + V+ G  S E E+S+ S       +   G K    D +R   L+               
Sbjct: 3   LGVIFGAKSFEHEISIVSAI-VLKNVLKQGLKFIFCDANRDFYLIEQKDMRANFFSSGKY 61

Query: 49  -----------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
                                  ++ D+  N++HG  GEDG + A+ E   + Y    + 
Sbjct: 62  KNSKKLSLAKGGFYTHSLFGANKVECDVIINLIHGMDGEDGKIAALFEFYGVKYIGPRLE 121

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145
           ASALS +K  +K +    GV      ++ R    S+     P ++KP + GSS+G+ V+ 
Sbjct: 122 ASALSYNKELTKFLAQKAGVKALDYEMLTR---QSEPKFHYPIILKPARLGSSIGVSVVH 178

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDVTEIAVP-KSDFYSY 202
            D  +     +  ++     +L+E ++ G++     G   D  +  + +  P K +F  Y
Sbjct: 179 DDSEL--AYAKDVAFEFDKDVLVEPFIKGVKEYNLAGCRIDGKIKFSIVEEPKKKEFLDY 236

Query: 203 ELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
           E KY S  N   V  A+I  ++ ++++      +       I R DF    +  +V+  E
Sbjct: 237 EQKYLSFSNENKVKEAEISEELKQKLKFNFSKIYDCGFDGAIIRCDFFV--IDDEVYLNE 294

Query: 262 INVQPGMTPVSIF 274
           IN  PG     +F
Sbjct: 295 INPNPGSLANYLF 307


>gi|157363697|ref|YP_001470464.1| D-alanine--D-alanine ligase [Thermotoga lettingae TMO]
 gi|157314301|gb|ABV33400.1| D-alanine--D-alanine ligase [Thermotoga lettingae TMO]
          Length = 334

 Score =  204 bits (519), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 71/288 (24%), Positives = 133/288 (46%), Gaps = 14/288 (4%)

Query: 22  CASALEDAGFKVSQID-VDRSVGLVLAHLKPDLAFNVLHGNF--GEDGLVQAILELLEIP 78
              ++E  G +V  ++ V       L   K D+ +N   G +    +  V AIL    IP
Sbjct: 31  IKKSIESGGHEVVLMEAVPEKFIPALTSEKVDIVYNFAEGTYSRAREAQVPAILSFYNIP 90

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSS 138
           YT S     A+ +DK  +KQ++ +  +      ++       +  +  P ++K    GSS
Sbjct: 91  YTGSDATTLAVCLDKALTKQILLTKDIKTPRFQVIRSPQEKLRKNMRFPLILKLNAEGSS 150

Query: 139 LGII---VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTE 191
            GI    ++        ++ +  S  + + +L+E+++ G E T GV+ +      L + E
Sbjct: 151 KGISETGLVHNYDEYKKEIDRLFS-IYSEPVLVEEFIRGREFTIGVLQEGNKYYVLPIME 209

Query: 192 IAVPKS-DFYSYELKYSSLN-STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
           I      +FYSY++K +S     +  PAKI L + ++++ +A    + +  + ++R D  
Sbjct: 210 IHFKHGKEFYSYKVKKNSDYYVDYTCPAKIDLMLERKLKNMAVKICKTLEIKDVARMDLR 269

Query: 250 FDPLSRKVFWLEINVQPGMTP-VSIFPEMAAYAGYSFRELLLWMVEDA 296
                   ++LEIN  PGM    S  P +A  A  ++ EL+L ++E+A
Sbjct: 270 VSQEDNNPYFLEINPLPGMARGFSDLPRIAEVADLTYEELILHVLENA 317


>gi|317178905|dbj|BAJ56693.1| D-alanyl-alanine synthetase A [Helicobacter pylori F30]
          Length = 347

 Score =  204 bits (519), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 69/314 (21%), Positives = 125/314 (39%), Gaps = 47/314 (14%)

Query: 3   VLMGGISSEREVSLSSGKACASALED---------AGFKVSQIDVD-------------- 39
           VL GG S E E+S+ S  A    L+D                ++                
Sbjct: 5   VLFGGASFEHEISIVSAIALKEVLKDRIKYFIFLDENHHFYLVEESNMHSKYFAQIKEKK 64

Query: 40  ------------RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87
                       +S  L    ++  L  N++HG  GEDG + ++LE   I +    I AS
Sbjct: 65  LPPLILTRNGLLKSSFLGAKIIELPLVINLVHGGDGEDGKLASLLEFYRIAFIGPRIEAS 124

Query: 88  ALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI---SPPYVIKPLKGGSSLGIIVI 144
            LS +K  +K      GV     +L+N     +   +   + P++IKP   GSSLG+ V+
Sbjct: 125 VLSYNKYLTKLYAKDLGVKTLDYVLLNEKNRANALDLIGFNFPFIIKPSNAGSSLGVSVV 184

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE----LTCGVMGDASLDVTEIAVPKSDFY 200
           K+++ +   L    ++ +  ++LIE ++  ++      C +  D      E    K +F 
Sbjct: 185 KEEKELIYAL--DGAFEYSKEVLIEPFIQEVKEYNLAGCKIKKDFCFSYIE-EPNKQEFL 241

Query: 201 SYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260
            ++ KY   +      A +   + ++++      +  +    + R DF    +  +V+  
Sbjct: 242 DFKQKYLDFSRNKAPKANLSNALEEQLKENFKKLYNDLFDGALIRCDFFV--IENEVYLN 299

Query: 261 EINVQPGMTPVSIF 274
           EIN  PG     +F
Sbjct: 300 EINPIPGSLANYLF 313


>gi|15645358|ref|NP_207532.1| D-alanyl-alanine synthetase A [Helicobacter pylori 26695]
 gi|2829460|sp|P56191|DDL_HELPY RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|2313860|gb|AAD07784.1| D-alanine:D-alanine ligase A (ddlA) [Helicobacter pylori 26695]
          Length = 347

 Score =  204 bits (519), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 73/314 (23%), Positives = 128/314 (40%), Gaps = 47/314 (14%)

Query: 3   VLMGGISSEREVSLSSGKACASALED---------AGFKVSQIDV-------------DR 40
           VL GG S E E+S+ S  A    L+D                I+               +
Sbjct: 5   VLFGGASFEHEISIVSAIALKGVLKDRIKYFIFLDENHHFYLIEESNMHSKYFAQIKEKK 64

Query: 41  SVGLVLAH-------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87
              L+L H             ++  L  N++HG  GEDG + ++LE   I +    I AS
Sbjct: 65  LPPLILTHNGLLKNSFLGAKIIELPLVINLVHGGDGEDGKLASLLEFYRIAFIGPRIEAS 124

Query: 88  ALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI---SPPYVIKPLKGGSSLGIIVI 144
            LS +K  +K      GV     +L+N     +   +   + P++IKP   GSSLG+ V+
Sbjct: 125 VLSYNKYLTKLYAKDLGVKTLDHVLLNEKNRANALDLMNFNFPFIIKPNNAGSSLGVNVV 184

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE----LTCGVMGDASLDVTEIAVPKSDFY 200
           K+++ +   L    ++ +  ++LIE ++ G++      C +  D      E    K +F 
Sbjct: 185 KEEKELVYAL--DGAFEYSKEVLIEPFIQGVKEYNLAGCKIKKDFCFSYVE-EPNKQEFL 241

Query: 201 SYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260
            ++ KY   +      A +   + ++++      +  +    I R DF    +  +V+  
Sbjct: 242 DFKQKYLDFSRNKAPKANLSNALEEQLKENFKKLYNDLFDGAIIRCDFFV--IKNEVYLN 299

Query: 261 EINVQPGMTPVSIF 274
           EIN  PG     +F
Sbjct: 300 EINPIPGSLANYLF 313


>gi|317014150|gb|ADU81586.1| D-alanyl-alanine synthetase A [Helicobacter pylori Gambia94/24]
          Length = 347

 Score =  203 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 71/314 (22%), Positives = 125/314 (39%), Gaps = 47/314 (14%)

Query: 3   VLMGGISSEREVSLSSGKACASALED---------AGFKVSQID---VDRSVGLVLAHLK 50
           VL GG S E E+S+ S  A    L+D                I+   +       +   K
Sbjct: 5   VLFGGASFEHEISIVSAIALKGVLKDRIKYFIFLDENHHFYLIEELNMHSKYFAQIKEKK 64

Query: 51  PD-----------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87
                                    L  N++HG  GEDG + ++LE   I +    + AS
Sbjct: 65  LPPLTLTRNGLLKNSFLGAKTIELPLVINLVHGGDGEDGKLASLLEFYRIAFIGPRVEAS 124

Query: 88  ALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI---SPPYVIKPLKGGSSLGIIVI 144
            LS +K  +K      GV      L+N     +   +   + P+++KP   GSSLG+ V+
Sbjct: 125 VLSYNKYLTKLYAKDLGVKALDYALLNEKNRANALDLIGFNFPFIVKPSNAGSSLGVNVV 184

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE----LTCGVMGDASLDVTEIAVPKSDFY 200
           K+++ +   L   S++ +  ++LIE ++ G++      C +  D      E    K +F 
Sbjct: 185 KEEKELVYAL--DSAFEYSKEVLIEPFIQGVKEYNLAGCKIKTDFCFSYVE-EPNKQEFL 241

Query: 201 SYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260
            ++ KY   + T    A +   + ++++      +  +    I R DF    +  +V+  
Sbjct: 242 DFKQKYLDFSRTKAPKANLSNALEEQLKENFKKLYNDLFDGAIIRCDFFV--IENEVYLN 299

Query: 261 EINVQPGMTPVSIF 274
           EIN  PG     +F
Sbjct: 300 EINPIPGSLANYLF 313


>gi|222823640|ref|YP_002575214.1| D-alanine--D-alanine ligase [Campylobacter lari RM2100]
 gi|254767723|sp|B9KFX8|DDL_CAMLR RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|222538862|gb|ACM63963.1| D-alanine--D-alanine ligase [Campylobacter lari RM2100]
          Length = 346

 Score =  203 bits (517), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 76/332 (22%), Positives = 136/332 (40%), Gaps = 51/332 (15%)

Query: 2   AVLMGGISSEREVSLSSG---KACASALEDAGF-----KVSQID-------------VDR 40
            V+ G  S E E+S+ S    K    A +   F     +   ID               +
Sbjct: 4   GVIFGANSYEHEISIVSAVVLKKVLKAQKKFIFCDKNKEFFLIDEEKMNAKTFSSGAYKK 63

Query: 41  SVGLVLAHLKP-------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87
              LVL                  D+A N++HG  GEDG + A+L+   I Y    I AS
Sbjct: 64  EKALVLKQGGFFIKTMLGEKKLDMDVAVNIVHGKDGEDGKIAALLDFYGIKYIGPRIEAS 123

Query: 88  ALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147
            LS +K  +K    S GV      ++N    +    +S P ++KP + GSS+GI ++K +
Sbjct: 124 VLSFNKALTKLYAQSVGVKTLDYKVLN-LHKEQNVSLSFPCILKPARLGSSIGISIVKDE 182

Query: 148 QSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDVTEIAVP-KSDFYSYEL 204
             +     +  ++   + +++EQ+V  I+     G M    ++ + I  P K++   +E 
Sbjct: 183 SELKYA--KDVAFEFDEDVVVEQFVSNIKEYNLAGCMIGEKMEFSIIEEPRKNEILDFEQ 240

Query: 205 KY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
           KY     S+ V  A I  ++ ++++      +  +    + R DF    +  +V+  EIN
Sbjct: 241 KYLGFSESSKVSEANISEELKQKLRDNFTRIYNPLFKGALIRCDFFV--IDDEVYLNEIN 298

Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
             PG     +F          F  ++  + ++
Sbjct: 299 PNPGSLANYLFE--------DFTNIVDNLAKN 322


>gi|317180500|dbj|BAJ58286.1| D-alanyl-alanine synthetase A [Helicobacter pylori F32]
          Length = 347

 Score =  203 bits (516), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 73/314 (23%), Positives = 129/314 (41%), Gaps = 47/314 (14%)

Query: 3   VLMGGISSEREVSLSSGKACASALED---------AGFKVSQIDV-------------DR 40
           VL GG S E E+S+ S  A    L+D                ++               +
Sbjct: 5   VLFGGASFEHEISIVSAIALKETLKDRIKYFIFLDENHHFYLVEESNMHSKYFAQIKEKK 64

Query: 41  SVGLVLAH-------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87
              L+L H             ++  L  N++HG  GEDG + ++LE   I +    I AS
Sbjct: 65  LPPLILTHNGLLKNSFLGTKIIELPLVINLVHGGDGEDGKLASLLEFYRIAFIGPRIEAS 124

Query: 88  ALSMDKMRSKQVVSSCGVPVCPSILVN-RFTMDSQHLISP--PYVIKPLKGGSSLGIIVI 144
            LS  K  +K      G+     +LVN +   ++  LI    P++IKP   GSSLG+ V+
Sbjct: 125 VLSYSKYLTKLYAKDLGIKTLDCVLVNEKNRANALDLIGFNLPFIIKPSNAGSSLGVSVV 184

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE----LTCGVMGDASLDVTEIAVPKSDFY 200
           K+++ +   L    ++ +  ++LIE ++ G++      C +  D      E    K +F 
Sbjct: 185 KEEKELIYAL--DGAFEYSKEVLIEPFIQGVKEYNLAGCKIKKDFCFSYVE-EPNKQEFL 241

Query: 201 SYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260
            ++ KY   +      A +   + ++++      +  +    + R DF    +  +V+  
Sbjct: 242 DFKQKYLDFSRNKAPKANLSNTLEEQLKENFKKLYNDLFDGALIRCDFFV--IENEVYLN 299

Query: 261 EINVQPGMTPVSIF 274
           EIN  PG     +F
Sbjct: 300 EINPIPGSLANYLF 313


>gi|307637426|gb|ADN79876.1| D-alanine--D-alanine ligase [Helicobacter pylori 908]
 gi|325996016|gb|ADZ51421.1| D-alanine--D-alanine ligase [Helicobacter pylori 2018]
 gi|325997611|gb|ADZ49819.1| D-alanine--D-alanine ligase [Helicobacter pylori 2017]
          Length = 356

 Score =  202 bits (515), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 70/314 (22%), Positives = 125/314 (39%), Gaps = 47/314 (14%)

Query: 3   VLMGGISSEREVSLSSG---KACAS------ALEDAGFKVSQIDVD-------------- 39
           VL GG S E E+S+ S    K             D       I+                
Sbjct: 14  VLFGGASFEHEISIVSAIVLKGVLKDRIKYFIFLDENHHFYLIEESNMHSKYFAQIKEKK 73

Query: 40  ------------RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87
                       ++  L    ++  L  N++HG  GEDG + ++LE   I +    I AS
Sbjct: 74  LPPLILTRNGLLKNSFLGTKIIELPLVINLVHGGDGEDGKLASLLEFYRIAFIGPRIEAS 133

Query: 88  ALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI---SPPYVIKPLKGGSSLGIIVI 144
            LS +K  +K      G+      L+N     +   +   + P+++KP   GSSLG+ V+
Sbjct: 134 VLSYNKYLTKLYAKDLGIKALDYALLNEKNRANALDLIGFNFPFIVKPSNAGSSLGVNVV 193

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE----LTCGVMGDASLDVTEIAVPKSDFY 200
           K+++ +   L   S++ +  ++LIE ++ G++      C +  D      E    K +F 
Sbjct: 194 KEEKELIYAL--DSAFEYSKEVLIEPFIQGVKEYNLAGCKIKKDFCFSYVE-EPNKQEFL 250

Query: 201 SYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260
            ++ KY   + T    A +   + ++++      +  +    I R DF    +  +V+  
Sbjct: 251 DFKQKYLDFSRTKAPKANLSNALEEQLKENFKKLYNDLFDGAIIRCDFFV--IENEVYLN 308

Query: 261 EINVQPGMTPVSIF 274
           EIN  PG     +F
Sbjct: 309 EINPIPGSLANYLF 322


>gi|479086|emb|CAA55651.1| vanA2 [Oerskovia turbata]
          Length = 261

 Score =  202 bits (514), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 67/248 (27%), Positives = 117/248 (47%), Gaps = 12/248 (4%)

Query: 21  ACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYT 80
            C SA+     K+  + V ++    + H   D+AF+ LHG  GEDG +Q + EL  IP+ 
Sbjct: 19  NCYSAVLSPDKKMHGLLVKKNHEYEINH--VDVAFSALHGKSGEDGSIQGLFELSGIPFV 76

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLG 140
              I +SA+ MDK  +  V  + G+      ++N+         + P   KP + GSS G
Sbjct: 77  GCDIQSSAICMDKSLTYIVAKNAGIATPAFWVINKDDRPVAATSTYPVFGKPARSGSSFG 136

Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD-ASLDVTEIAVPKSDF 199
           +  +     +  D    S+  +  ++LIEQ V G E+ C V+G+ A+L V E+   +  +
Sbjct: 137 VKKVNSADEL--DYAIESARQYDSKILIEQAVSGCEVGCAVLGNSAALVVGEVDQIRLQY 194

Query: 200 YSY------ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
             +      E +  S N+   +PA +  +    +Q      ++A+GCRG++R D      
Sbjct: 195 GIFRIHQEVEPEKGSENAVITVPADLSAEERGRIQETGKKIYKALGCRGLARVDMFL-QD 253

Query: 254 SRKVFWLE 261
           + ++   E
Sbjct: 254 NGRIVLNE 261


>gi|218886343|ref|YP_002435664.1| D-alanine--D-alanine ligase [Desulfovibrio vulgaris str. 'Miyazaki
           F']
 gi|218757297|gb|ACL08196.1| D-alanine--D-alanine ligase [Desulfovibrio vulgaris str. 'Miyazaki
           F']
          Length = 408

 Score =  201 bits (513), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 86/385 (22%), Positives = 146/385 (37%), Gaps = 91/385 (23%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           +AV  GG S E +VS+ +G     AL+ A ++   + VDR                    
Sbjct: 8   VAVFFGGRSPEHDVSIVTGLQVIQALDAAQYEPVPVYVDRCGVWRTGEKLLDRATYIPAR 67

Query: 49  ---------------------------------LKPDLAFNVLHGNFGEDGLVQAILELL 75
                                            +  D+A    HG +GEDG +Q + E +
Sbjct: 68  DADGLPAVSLEIAPGKGGMLVEQTSKLFGKPRRIPFDVAIPAFHGPYGEDGDMQGLFEAV 127

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN---------RFTMDSQ-HLIS 125
            IPYT   +LASA+ MDK  +KQ ++  G+P+ P  ++          R  +++    I+
Sbjct: 128 GIPYTGMRVLASAIFMDKAATKQALAGTGIPMLPCAVLRKPVGGLLPPRADIEAALAGIT 187

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGD 184
            P  +KP   GSS+G+  +   + I    +    + +    ++E Y+DG +E    V  D
Sbjct: 188 LPGCLKPAHLGSSIGVAKVDSIEDIEA--VLPGLFRNDTVAIVEPYLDGCVEYNISVRRD 245

Query: 185 A---SLDVTEIAVPKSDFYSYELKYSSLN---------------------------STHV 214
               +    E     S+   +  KY S                             +  +
Sbjct: 246 GEGHATSAIERPKRDSELLDFRQKYLSSGGKTGSKTGGMGGTKSAGDSGSAGMLSLTREI 305

Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274
            P  +P  +   ++  A   + A G  G  R DF++D    +V+  E+N  PG    + F
Sbjct: 306 NP-DLPESLEGRIRDFAVRTYAAFGGTGAPRMDFMYDATRDEVWLNEVNPIPG--SFAFF 362

Query: 275 PEMAAYAGYSFRELLLWMVEDASCL 299
              AA +   F  LL  M+++A  +
Sbjct: 363 LWEAAESPIRFTRLLSLMIDEARAM 387


>gi|307720863|ref|YP_003892003.1| D-alanine/D-alanine ligase [Sulfurimonas autotrophica DSM 16294]
 gi|306978956|gb|ADN08991.1| D-alanine/D-alanine ligase [Sulfurimonas autotrophica DSM 16294]
          Length = 345

 Score =  201 bits (513), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 70/324 (21%), Positives = 128/324 (39%), Gaps = 47/324 (14%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV----------------- 45
           +L GG S E E+S+ S       L +        D D +  LV                 
Sbjct: 5   ILFGGASFEHEISIVSAITLKEKLSNFDLTFIFCDSDHTFYLVEASKMKAVTFSKGEHKK 64

Query: 46  -----LAHLKP------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
                LA                 +  N++HG  GEDG + A+L+   I Y    + A  
Sbjct: 65  MPVLTLAQGAFVQKSMFSKSEYNSVVLNLIHGADGEDGTIAALLDFYSIKYIGPRVDACT 124

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQ 148
            S DK  +K +  + GV      ++++    +      P +IKP   GSS+G+ ++K + 
Sbjct: 125 FSYDKRYTKYLCEAIGVKSVKYEVMHKNEHCNIQT-PYPIIIKPSSLGSSIGVSIVKDES 183

Query: 149 SIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDVTEIAVPK-SDFYSYELK 205
            +  D     ++   D +++E +++G++     G   + ++  + +  P   +F  +E K
Sbjct: 184 EL--DYALDVAFEFDDTVIVEPFLEGVKEYNLAGYYANGAMHYSIVEEPHKEEFLDFEKK 241

Query: 206 YSSLN-STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           Y   + S  VL A +  ++   ++      ++ +    + R DF     + +V   EIN 
Sbjct: 242 YMDFSRSEQVLTADVSEELTLRLKTNFEKVYRGLFEGALIRCDFFV--FNDEVLLNEINP 299

Query: 265 QPGMTPVSIFPEMAAYAGYSFREL 288
            PG     +F + A     S  EL
Sbjct: 300 IPGSMANYLFEDFA----VSLEEL 319


>gi|224372975|ref|YP_002607347.1| D-alanyl-alanine synthetase A [Nautilia profundicola AmH]
 gi|223589885|gb|ACM93621.1| D-alanine--D-alanine ligase [Nautilia profundicola AmH]
          Length = 344

 Score =  201 bits (513), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 76/334 (22%), Positives = 132/334 (39%), Gaps = 56/334 (16%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------- 48
           A+L GG S E E+S+ S       ++    +   ID +R++ LV                
Sbjct: 4   ALLFGGNSFEHEISIVSAITLKDKIKKHTLEFIYIDQNRNMYLVDKQNMKSKYFASGEYK 63

Query: 49  ------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84
                                   L  D   N++HG  GEDG +  ILE   I      +
Sbjct: 64  NSQKIEITKGGFKYTKGLLKKDVFLNYDAVINLIHGKDGEDGKLAGILEFFNIKSITPNV 123

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
            AS +S +K+ +K      GV V    ++     + +     P +IKP + GSS+G+ V+
Sbjct: 124 EASVISYNKVLTKAYAKEIGVNVIDYEIIT----EPKSSFDFPIIIKPARLGSSIGVSVV 179

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDVTEIA-VPKSDFYS 201
           K  +    D     +    D ++ E +++GIE     G +      ++ I  V KSDF  
Sbjct: 180 KTQEEF--DYAFDVAREFDDLIIAEPFIEGIEEYNLAGCLAGGEFMLSNIEKVEKSDFLD 237

Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
           +E KY   +  +V+ + +  D+ + +++     + +     I R DF        V+  E
Sbjct: 238 FEKKYMDFSRKNVMLSDVDKDLTERIKKTFKKIYNSTFKNAIIRCDFFVKE--GSVYLNE 295

Query: 262 INVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           IN  PG     +F          F ++L  + ++
Sbjct: 296 INPIPGSMANYLFD--------DFDDVLEKLAKN 321


>gi|153810104|ref|ZP_01962772.1| hypothetical protein RUMOBE_00485 [Ruminococcus obeum ATCC 29174]
 gi|149834282|gb|EDM89362.1| hypothetical protein RUMOBE_00485 [Ruminococcus obeum ATCC 29174]
          Length = 226

 Score =  201 bits (513), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 66/223 (29%), Positives = 113/223 (50%), Gaps = 7/223 (3%)

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFTMDSQHLISPPYVIK 131
           + IPYT +G L+SA++MDK  +K +    GVP      +   +R     +  +  P V+K
Sbjct: 1   MGIPYTGTGYLSSAMAMDKGVTKAMFQMRGVPTPAGKAMKKKDRVETPQELGMDFPVVVK 60

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
              GGSS+G+ ++   +     L    ++ + +++++E++V+G+E T  V+   +  V +
Sbjct: 61  TCCGGSSIGVYIVDNQEDYTKAL--DGAFTYENEVVVEEFVEGVEYTVAVVDGKAYPVVQ 118

Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
           I VP   FY YE KY         PA I  ++ K +Q  A   + A+     +R DF+  
Sbjct: 119 I-VPVQGFYDYENKYKPGAVKETCPAPISEELTKRLQEAAVDGYHALEMESYARLDFIVT 177

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
               K++ LE N  PGMTP S+ P+ AA  G  +  L   +++
Sbjct: 178 K-DEKIYCLEANTLPGMTPTSLIPQEAAVLGMDYPTLCEELIK 219


>gi|2231989|gb|AAB62176.1| vancomycin resistance protein B [Enterococcus faecium]
 gi|2231991|gb|AAB62177.1| vancomycin resistance protein B [Enterococcus faecium]
 gi|2231993|gb|AAB62178.1| vancomycin resistance protein B [Enterococcus faecium]
          Length = 267

 Score =  201 bits (513), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 61/216 (28%), Positives = 105/216 (48%), Gaps = 9/216 (4%)

Query: 49  LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
            + D+AF VLHG  GEDG +Q +  L  IPY    I +SA  MDK  +  +  + G+ V 
Sbjct: 54  RRIDVAFPVLHGKCGEDGAIQGLFVLSGIPYVGCDIQSSAACMDKSLAYILTKNAGIAVP 113

Query: 109 PSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168
              ++++        ++ P  +KP + GSS G+  +   + +   +   ++  +  ++LI
Sbjct: 114 EFQIIDKGDKPEAGALTYPVFVKPARSGSSFGVTKVNGTEELNAAI--EAAGQYDGKILI 171

Query: 169 EQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSY---ELKYSSLNSTHVLPAKIPL 221
           EQ + G E+ C VMG+       +V +I +    F  +   E +  S N+   +PA IP+
Sbjct: 172 EQAISGCEVGCAVMGNEDDLIVGEVDQIRLSHGIFRIHQENEPEKGSENAMITVPADIPV 231

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
           +    VQ  A   ++ +GCRG++R D         V
Sbjct: 232 EERNRVQETAKKVYRVLGCRGLARVDLFLQEDGGIV 267


>gi|308182897|ref|YP_003927024.1| D-alanyl-alanine synthetase A [Helicobacter pylori PeCan4]
 gi|308065082|gb|ADO06974.1| D-alanyl-alanine synthetase A [Helicobacter pylori PeCan4]
          Length = 347

 Score =  201 bits (512), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 71/314 (22%), Positives = 124/314 (39%), Gaps = 47/314 (14%)

Query: 3   VLMGGISSEREVSLSSGKACASALED---------AGFKVSQID---VDRSVGLVLAHLK 50
           VL GG S E E+S+ S       L+D                I+   +       +   K
Sbjct: 5   VLFGGASFEHEISIVSAIVLKEVLKDRIKYFIFLDENHHFYLIEESNMHSKYFAQIKEKK 64

Query: 51  PD-----------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87
                                    L  N++HG  GEDG + ++LE   I +    I AS
Sbjct: 65  LSPLILTHNGLLKNSFLGAKIIELPLVINLVHGGDGEDGKLASLLEFYRIAFIGPRIEAS 124

Query: 88  ALSMDKMRSKQVVSSCGVPVCPSILVN-RFTMDSQHLIS--PPYVIKPLKGGSSLGIIVI 144
            LS +K  +K      G+     +L+N R   ++  LI    P++IKP   GSSLG+ V+
Sbjct: 125 VLSYNKYLTKLYAKDLGIKALDYVLLNERNRANALDLIGFNFPFIIKPNNAGSSLGVSVV 184

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE----LTCGVMGDASLDVTEIAVPKSDFY 200
           K+ + +   L    ++ +  ++LIE ++ G++      C +  D      E    K +F 
Sbjct: 185 KEKKELIYAL--DGAFEYSKEVLIEPFIQGVKEYNLAGCKIKKDFCFSYVE-EPNKQEFL 241

Query: 201 SYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260
            ++ KY   +      A +   + ++++      +  +    + R DF    +  +V+  
Sbjct: 242 DFKQKYLDFSRNKAPKANLSNTLEEQLKENFKKLYNDLFDGALIRCDFFV--IEDEVYLN 299

Query: 261 EINVQPGMTPVSIF 274
           EIN  PG     +F
Sbjct: 300 EINPIPGSLANYLF 313


>gi|2231985|gb|AAB62174.1| vancomycin resistance protein B [Enterococcus faecium]
          Length = 267

 Score =  201 bits (512), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 61/216 (28%), Positives = 105/216 (48%), Gaps = 9/216 (4%)

Query: 49  LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
            + D+AF VLHG  GEDG +Q +  L  IPY    I +SA  MDK  +  +  + G+ V 
Sbjct: 54  RRIDVAFPVLHGKCGEDGAIQGLFVLSGIPYVGCDIQSSAACMDKSLAYILTKNAGIAVP 113

Query: 109 PSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168
              ++++        ++ P  +KP + GSS G+  +   + +   +   ++  +  ++LI
Sbjct: 114 EFQMIDKGDKPEAGALTYPVFVKPARSGSSFGVTKVNGTEELNAAI--EAAGQYDGKILI 171

Query: 169 EQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSY---ELKYSSLNSTHVLPAKIPL 221
           EQ + G E+ C VMG+       +V +I +    F  +   E +  S N+   +PA IP+
Sbjct: 172 EQAISGCEVGCAVMGNEDDLIVGEVDQIRLSHGIFRIHQENEPEKGSENAMITVPADIPV 231

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
           +    VQ  A   ++ +GCRG++R D         V
Sbjct: 232 EERNRVQETAKKVYRVLGCRGLARVDLFLQEDGGIV 267


>gi|46446032|ref|YP_007397.1| putative D-alanine--D-alanine ligase [Candidatus Protochlamydia
           amoebophila UWE25]
 gi|46399673|emb|CAF23122.1| putative D-alanine--D-alanine ligase [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 798

 Score =  201 bits (512), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 80/347 (23%), Positives = 137/347 (39%), Gaps = 49/347 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD------------------RSV 42
           +A++ GG S ER +SL+S ++    L     ++  I VD                     
Sbjct: 4   IALICGGPSLERGISLNSARSVLDHLASEFIEIIPIYVDYQNFFYLISTAQLYSNTPADF 63

Query: 43  GLVLAH--------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
              L                   DL F V+HG FGEDG +Q ILE +++P+  +G  A A
Sbjct: 64  DFKLKKSAQAMNREEFKKILRNIDLVFPVIHGIFGEDGELQKILEEIDVPFVGTGSQACA 123

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP-------PYVIKPLKGGSSLGI 141
               K  + Q++     P    + V   T D   + S          ++KP  GGSS+G+
Sbjct: 124 EMFCKYHASQILHQNRFPAFMKLEVCPETNDLAPIKSFFEQHQLKRAIVKPTMGGSSIGV 183

Query: 142 IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA-----SLDVTEIAVP- 195
             ++  +     +          + LIE + +G E T  V+ +      +L  TEI +  
Sbjct: 184 TSVQTPEDAFEKIKMLCQQGIAKRALIEPFCEGTEFTVVVLQNQQSKPVALIPTEIEMSY 243

Query: 196 -KSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
                + Y  KY  +  +T+  PA+    I + +++ A         R  +R D      
Sbjct: 244 QNHQIFDYRKKYLPTNQTTYHTPARFDETIIQGIRQKAEAIFTLFHMRDFARLDGWLLN- 302

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
              +++ ++N   GM   S     A+  G + R++   ++  A CLR
Sbjct: 303 DGTIYFTDLNPISGMEQNSFLFRQASLLGLTHRDVFRLIITSA-CLR 348



 Score = 97.5 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 54/314 (17%), Positives = 113/314 (35%), Gaps = 67/314 (21%)

Query: 45  VLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCG 104
            L+       F  +HG  GE+G++Q  LE  ++ Y  S    S++ MDK  + QV+    
Sbjct: 472 QLSASNQAFVFIAMHGGEGENGILQKELEKNQLYYNGSCAKTSSICMDKFLTGQVIEQ-- 529

Query: 105 VPVCPSILVNRFTMDSQHLISP-------------------PYVIKPLKGGSSLGIIVIK 145
           +       + +  +++ +L                        +IKP + G S GI++++
Sbjct: 530 LKHPNIFSLPKECVEAANLFGQSTKYFLEKWNKICISLRSNRLIIKPRQDGCSAGIVLLE 589

Query: 146 KDQSIPLDLL--------------------QSSSWNHGDQLLIEQYVD------------ 173
               +                              +   + L+E Y++            
Sbjct: 590 SGADLEKYFAFIQNNVSLIPKGSFSQQKDVIEMPSSTCVEYLLEPYIETDRIILDQGELI 649

Query: 174 ------GIELTCGVMGDASLDVTE---IAVPKSDFYSYELKYSSLNSTHVLPAK---IPL 221
                  +ELT GV+    +  +    I + +    S E K+      ++ P     +  
Sbjct: 650 HEIKEGWVELTVGVLEHNQIYRSLNPSITLAEGAVLSLEEKFQGGTGVNLTPPPEKILAS 709

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM--AA 279
           +   +++ L      A+  +  +R D  +   ++K+  +E N  PG+TP ++F +   A 
Sbjct: 710 EDVSQIKFLIEKTADALQIQNYARLDIFYHRETKKMVVIEANTLPGLTPSTVFYQQGLAE 769

Query: 280 YAGYSFRELLLWMV 293
               +   LL  ++
Sbjct: 770 KKPLNPLSLLEIII 783


>gi|327399078|ref|YP_004339947.1| type 11 methyltransferase [Hippea maritima DSM 10411]
 gi|327181707|gb|AEA33888.1| Methyltransferase type 11 [Hippea maritima DSM 10411]
          Length = 661

 Score =  200 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 74/298 (24%), Positives = 123/298 (41%), Gaps = 25/298 (8%)

Query: 24  SALEDAG-FKVSQIDVDRSVGLVLAHLKP--DLAFNVLHGNFGEDGL----VQAILELLE 76
            AL +   ++   ++   ++   L  LKP  D  FN+    F  +      + A+LE+L 
Sbjct: 331 KALNELKNYRFIYVNNHDTLISDLIKLKPKIDFVFNLCDEGFNNEPTKELYIPALLEMLN 390

Query: 77  IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGG 136
           IPYT S     A   DK   + V    G+PV   ILV       +   + P ++KP  G 
Sbjct: 391 IPYTGSNPQCLAYCYDKSLIRGVAKEMGIPVPKGILVTPDKTVLELPFNFPAIVKPNFGD 450

Query: 137 SSLGI---IVIKKDQSIPLDL-LQSSSWNHGDQLLIEQYVDGIELTCGVMGD-----ASL 187
           SS GI    V+     +   L      + H   +LIE+++ G +LT G++G+       L
Sbjct: 451 SSFGITKKSVVYTMDELIEVLSEIKEQFGHDKPVLIEEFLTGSDLTIGIIGNISGNYKIL 510

Query: 188 DVTEIAVPK-----SDFYSYELKYSSLN---STHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
            + E    K          YE K+   +   +     A++  +  + +   +    + + 
Sbjct: 511 PIIEEDYSKLPDDLPKICGYEAKWLPGSPYWNNTSRLAQLDEETERIIVESSLKLWERLN 570

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
                R D+  D  S K   LE+N  PG        +MA  AG S+ E+L  ++E A+
Sbjct: 571 VNDYCRFDWRLDSES-KPKLLEVNPNPGWCWDGHLAKMAKIAGISYGEMLNMILEAAA 627


>gi|229091614|ref|ZP_04222819.1| D-alanine--D-alanine ligase [Bacillus cereus Rock3-42]
 gi|228691763|gb|EEL45513.1| D-alanine--D-alanine ligase [Bacillus cereus Rock3-42]
          Length = 219

 Score =  200 bits (509), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 53/220 (24%), Positives = 109/220 (49%), Gaps = 9/220 (4%)

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT---MDSQHLISPPYVIKPLKGGSSLG 140
           +L+S + MDK  SK+++   G+     I + +     +D    +  P V+KP  GGSS+G
Sbjct: 1   MLSSGICMDKNISKKILRYEGIETPDWIELTKMEDLNLDELDKLGFPLVVKPNSGGSSVG 60

Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFY 200
           + ++     +    +  + +    +++IE+Y+ G E+TC +     L +  I    ++F+
Sbjct: 61  VKIVYDKDELIS--MLETVFEWDSEVVIEKYIKGDEITCSIFDGKQLPIISIR-HAAEFF 117

Query: 201 SYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260
            Y  KY    +   +  ++P ++ + V + +   ++A+ C   +R D +        + +
Sbjct: 118 DYNAKYDDAGTIEEV-IELPAELKERVNKASLACYKALKCSVYARVDMMV--KDGIPYVM 174

Query: 261 EINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           E+N  PGMT  S+ P+ A  AG  + +LL  ++E +  +R
Sbjct: 175 EVNTLPGMTQASLLPKSADAAGIHYSKLLDMIIETSLRVR 214


>gi|57167797|ref|ZP_00366937.1| D-alanine--D-alanine ligase [Campylobacter coli RM2228]
 gi|57020919|gb|EAL57583.1| D-alanine--D-alanine ligase [Campylobacter coli RM2228]
          Length = 346

 Score =  200 bits (509), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 67/330 (20%), Positives = 127/330 (38%), Gaps = 51/330 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALE--------DAGFKVSQIDVDR------------ 40
           +A+L GG S E E+S+ S       +         D   +   I  ++            
Sbjct: 3   LAILFGGNSYEHEISIVSAVVLKKVINTDLTFIFCDEKRRFYLIPSEKMNSKTFSGGAYQ 62

Query: 41  --------------SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
                                +L  D   N++HG  GEDG + ++LE  +I +    + A
Sbjct: 63  KEKELFLRQKAFYHKSLWSEKNLNLDCVINLIHGRDGEDGKIASLLEFFDIKFIGPRVEA 122

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           S LS +K  +K    S GV      ++ +           P ++KP + GSS+GI + K 
Sbjct: 123 SVLSFNKEFTKLYAQSVGVKTLDYQMLRKSQKQDFTA-HFPCILKPARLGSSIGISIAKN 181

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDVTEIAVP-KSDFYSYE 203
           ++ +  D  +   +     +L+E +   I+     G M       + I  P K +F  ++
Sbjct: 182 EKEL--DYAKDVGFEFDTDILVEDFKSNIKEYNLAGCMIKDEFIFSIIEEPRKKEFLDFK 239

Query: 204 LKYSSLNST-HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
            KY S +    ++ A +  ++ ++++      +  +    + R DF    L  +V+  EI
Sbjct: 240 QKYLSFSGHNELIEADLSEELKQKLKDNFAKIYNPLFKGALIRCDFFI--LDNEVYLNEI 297

Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           N  PG     +F          F +++  +
Sbjct: 298 NPNPGSLANYLF--------KDFNKIIEQL 319


>gi|237753178|ref|ZP_04583658.1| D-alanyl-alanine synthetase A [Helicobacter winghamensis ATCC
           BAA-430]
 gi|229375445|gb|EEO25536.1| D-alanyl-alanine synthetase A [Helicobacter winghamensis ATCC
           BAA-430]
          Length = 345

 Score =  199 bits (508), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 75/313 (23%), Positives = 128/313 (40%), Gaps = 45/313 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           + +L GG S E E+S+ S  A    L      V  +D + +  L+               
Sbjct: 3   LCLLFGGKSYEHEISIVSAIALKKLLPKIKHFVF-LDSNHNFYLIPKEQMQSKFFSTKSY 61

Query: 50  --------KPD----------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
                   K D                +  N++HG  GEDG + ++L+   IPY      
Sbjct: 62  EKTQKIYPKKDGFYTRTLFGEKPLNLPVILNLIHGGDGEDGTLASLLDFYGIPYIGPRNP 121

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145
           A  LS DK   K   +S GV      ++ R  +     +  P +IKP + GSSLGI V++
Sbjct: 122 ACVLSYDKELIKGFAASRGVKCLAHRVLYRNDL-VPSDLEFPIIIKPARLGSSLGIQVVE 180

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDVTEIAVP-KSDFYSY 202
             +++   L   S++ + ++++IE +++GI+     G  G   +  + I  P KS F  +
Sbjct: 181 SQENLQYAL--DSAFEYDEKVIIEPFIEGIKEYNLAGFKGKDGIQFSFIEEPEKSKFLDF 238

Query: 203 ELKYSSLN-STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
           E KY   + +++   A+I   + + +Q      +       + R DF         +  E
Sbjct: 239 EKKYLDFSRTSNAKEAEISDALKQALQESFTRLYNNAFEGALIRCDFFI--KDNDCYLNE 296

Query: 262 INVQPGMTPVSIF 274
           IN  PG     +F
Sbjct: 297 INPVPGSLANYLF 309


>gi|322705322|gb|EFY96909.1| hypothetical protein MAA_07722 [Metarhizium anisopliae ARSEF 23]
          Length = 361

 Score =  199 bits (508), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 83/308 (26%), Positives = 125/308 (40%), Gaps = 31/308 (10%)

Query: 20  KACASALEDAGFKVSQIDVDRSVGLVLA---HLKPDLAFNVLHGNFG--EDGLVQAILEL 74
           KA A+AL+  G  V+ +    S+   LA   H   DL FN+  G  G   +  V A+LE 
Sbjct: 41  KAVAAALQGLGHDVTLVPGVSSLVEHLAAGQHKNWDLVFNMAQGFHGPARESHVPALLEA 100

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM----DSQHLISPPYVI 130
             IPYT S     AL  +K  +K ++   GVP  P +++    +     +      P  +
Sbjct: 101 FLIPYTFSDAATMALCQNKANTKIILEHHGVPNAPFMVIPSEHLSLLNHATLPPKYPLFV 160

Query: 131 KPLKGGSSLGI---IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL 187
           KP   GSS GI     +     + L + +  +   G  +L+E ++ G E T  ++G  S 
Sbjct: 161 KPATEGSSKGIDRFNKVNNYAELELAVQKLKAKFPGQDILVESFLSGREFTVSILGTGSC 220

Query: 188 D-VTEIAV------PKSD--------FYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLA 231
             V  I        P++         F  ++ K S         A  +     K   ++A
Sbjct: 221 SRVIGIREHIWQTFPENGNGYQATQEFACWKSKLSEGCLLRYNDAHDMDDAHVKAACQVA 280

Query: 232 FLAHQAIGCRGISRSDFLF--DPLSRKVFWLEINVQPGMTP-VSIFPEMAAYAGYSFREL 288
                A+GCR   R D  F  D  +     LE+N   G+ P  S  P  A   G SF  L
Sbjct: 281 LDTWTALGCRDAGRVDIRFSSDDANGVPNVLEVNPIAGLLPGHSPLPASAEENGLSFEAL 340

Query: 289 LLWMVEDA 296
           L  ++E A
Sbjct: 341 LTAILESA 348


>gi|1857220|gb|AAB49636.1| vancomycin resistance protein [Enterococcus faecalis]
          Length = 261

 Score =  199 bits (508), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 62/209 (29%), Positives = 105/209 (50%), Gaps = 9/209 (4%)

Query: 49  LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
            + D+AF VLHG  GEDG +Q + EL  IPY    I +SA  MDK  +  +  + G+ V 
Sbjct: 55  RRIDVAFPVLHGKCGEDGAIQGLFELSGIPYVGCDIQSSAACMDKSLAYILTKNAGIAVP 114

Query: 109 PSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168
              ++++        ++ P  +KP + GSS G+  +   + +   +   ++  +  ++LI
Sbjct: 115 EFQMIDKGDKPETGALTYPVFVKPARSGSSFGLTKVNGTEELNAAI--EAAGQYDGKILI 172

Query: 169 EQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSY---ELKYSSLNSTHVLPAKIPL 221
           EQ + G E+ C VMG+       +V +I +    F  +   E +  S N+   +PA IP+
Sbjct: 173 EQAISGCEVGCAVMGNEDDLIVGEVDQIRLSHGIFRIHQENEPEKGSENAMITVPADIPV 232

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
                VQ  A   ++A+GCRG++R D   
Sbjct: 233 GERNRVQETAKKVYRALGCRGLARVDLFL 261


>gi|313682067|ref|YP_004059805.1| d-alanine/d-alanine ligase [Sulfuricurvum kujiense DSM 16994]
 gi|313154927|gb|ADR33605.1| D-alanine/D-alanine ligase [Sulfuricurvum kujiense DSM 16994]
          Length = 345

 Score =  199 bits (508), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 71/331 (21%), Positives = 138/331 (41%), Gaps = 51/331 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALE---------DAGFKVSQIDVDRSVGLVLAH--- 48
           +A+L GG S E E+S+ S       L          D   K   ID  +   +  +    
Sbjct: 3   LAILFGGASYEHEISIVSAITVKEKLSRYELSFIFCDQDHKFYLIDGTKMKAVTFSRGEH 62

Query: 49  ---------------------LKPDL-AFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
                                 K D+   N++HG  GEDG + ++L+   IP+      A
Sbjct: 63  RKMPQIFLANGGFEQRGLFGSKKHDMPILNLIHGGDGEDGSIASLLDFFHIPFIGPRKEA 122

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           S LS DK  +K + +S G+   P  ++++    +    + P++IKP + GSS+G+ +++ 
Sbjct: 123 SMLSFDKHYTKWLANSLGIKTLPYEILHKEDKRAVKT-AYPFIIKPARLGSSIGVSIVR- 180

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDVTEIAVP-KSDFYSYE 203
            +   LD     ++     +LIE ++ G++     G      ++ + +  P K++F  +E
Sbjct: 181 -EERELDYALDVAFEFDSVVLIEPFIAGVKEYNLAGFSARGEMNYSIVEEPQKAEFLDFE 239

Query: 204 LKYSSLN-STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
            KY   + S +V  A +   + ++++      +  +    + R DF    +  +V+  EI
Sbjct: 240 KKYLDFSRSGNVAEASVSDTLVQQLRDAFKTIYLPLFEGALIRCDFF--EIEGEVYLNEI 297

Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           N  PG     +F          F + +  ++
Sbjct: 298 NPIPGSMANYLFD--------DFGDAIQKLL 320


>gi|308193610|gb|ADO16336.1| vancomycin resistance protein A [Enterococcus faecium]
          Length = 225

 Score =  199 bits (508), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 61/206 (29%), Positives = 103/206 (50%), Gaps = 9/206 (4%)

Query: 51  PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            D+AF+ LHG  GEDG +Q + EL  IP+    I +SA+ MDK  +  V  + G+     
Sbjct: 22  VDVAFSALHGKSGEDGSIQGLFELSGIPFVGCDIQSSAICMDKSLTYIVAKNAGIATPAF 81

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            ++N+         + P  +KP + GSS G+  +     +  D    S+  +  ++LIEQ
Sbjct: 82  WVINKDDRPVAATFTYPVFVKPARSGSSFGVKKVNSADEL--DYAIESARQYDSKILIEQ 139

Query: 171 YVDGIELTCGVMGD-ASLDVTEIAVPKSDFYSY------ELKYSSLNSTHVLPAKIPLDI 223
            V G E+ C V+G+ A+L V E+   +  +  +      E +  S N+   +PA +  + 
Sbjct: 140 AVSGCEVGCAVLGNSAALVVGEVDQIRLQYGIFRIHQEVEPEKGSENAFITVPADLSAEE 199

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFL 249
              +Q  A   ++A+GCRG++R D  
Sbjct: 200 RGRIQETAKKIYKALGCRGLARVDMF 225


>gi|225850791|ref|YP_002731025.1| D-alanine--D-alanine ligase [Persephonella marina EX-H1]
 gi|225645232|gb|ACO03418.1| D-alanine--D-alanine ligase [Persephonella marina EX-H1]
          Length = 325

 Score =  199 bits (507), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 72/286 (25%), Positives = 126/286 (44%), Gaps = 15/286 (5%)

Query: 22  CASALEDAGFKVSQIDVDRSVGLVLAHL---KPDLAFNVLHGNFGEDG--LVQAILELLE 76
            A AL   G  V   D +  +   L         + FN+ +G  GED    + ++LE+L 
Sbjct: 34  IADALRKKGHYVEIADGNIEIIDRLKEFFSKGKGIVFNLSYGIQGEDRYAHIPSLLEMLG 93

Query: 77  IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGG 136
           +PYT S      L++DK  +K ++    +P     + +    D  + +  P ++KPLK  
Sbjct: 94  VPYTGSSPEGHTLALDKAVTKILLKYYDIPTPDFHVFSPSDHDFSN-VRFPAIVKPLKEA 152

Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD----ASLDVTEI 192
            SLGI V+K    +   + + +        ++E+++ G E + G++G+     +L V E 
Sbjct: 153 LSLGITVVKDTDQMKKAVSRITE-EFHQDAIVEEFIRGREFSVGLIGNDEDVETLPVLEF 211

Query: 193 AVPKSDFYSYELKY--SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
                D  + +  Y         + PA IP    K +Q L+      +G R  +R+D   
Sbjct: 212 DF-GGDPDAIQTTYLKRHKPIEKICPADIPEKTAKRMQELSKKVFHVLGLRDYARTDIRM 270

Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           D L   ++ LEIN Q  +     F   A  AGY++ +L+  ++  A
Sbjct: 271 D-LEGNIYILEINSQASLGETGSFVTAAKTAGYTYEDLIEKILNTA 315


>gi|322699308|gb|EFY91071.1| hypothetical protein MAC_02957 [Metarhizium acridum CQMa 102]
          Length = 357

 Score =  199 bits (507), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 83/304 (27%), Positives = 127/304 (41%), Gaps = 27/304 (8%)

Query: 20  KACASALEDAGFKVSQIDVDRSVGLVLA---HLKPDLAFNVLHGNFG--EDGLVQAILEL 74
           KA A+ LE  G  V+ +    S+   LA   H   DLAFN+  G  G   +  V A+LE 
Sbjct: 41  KAVAAGLESLGHDVTIVPGVSSLVEHLAAGKHKNWDLAFNMAQGFHGPARESHVPALLEA 100

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS--PPYVIKP 132
             IPYT S     AL  +K  +K +++  GVP  P +++    +     +    P  +KP
Sbjct: 101 YLIPYTFSDAATMALCQNKANTKIILNHHGVPSAPFMVIPSEHLSIHATLPPEYPLFVKP 160

Query: 133 LKGGSSLGI---IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD- 188
              GSS GI     +     + L + +  +   G  +L+E ++ G E T  ++G  S   
Sbjct: 161 ATEGSSKGIDRFNKVNNYAELELAVQKLKAKFPGQDILVESFLSGREFTVSILGTGSHSR 220

Query: 189 VTEIAV------PKSDFY------SYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAH 235
           V  I        P++ ++      S++ K S         A  +     K   ++A    
Sbjct: 221 VVGIREHIWQTFPENGYHATEEFASWKSKLSEGCLLRYNDAHDMDDPQVKAACQVALDTW 280

Query: 236 QAIGCRGISRSDFLF--DPLSRKVFWLEINVQPGMTP-VSIFPEMAAYAGYSFRELLLWM 292
            A+GCR   R D  F  D        LE+N   G+ P  S  P  A   G SF  LL  +
Sbjct: 281 TALGCRDAGRVDIRFNSDDADAIPNVLEVNPIAGLLPGHSPLPASAEENGLSFEALLTAI 340

Query: 293 VEDA 296
           ++ A
Sbjct: 341 IKSA 344


>gi|322380385|ref|ZP_08054591.1| D-alanyl-alanine synthetase A [Helicobacter suis HS5]
 gi|321147175|gb|EFX41869.1| D-alanyl-alanine synthetase A [Helicobacter suis HS5]
          Length = 348

 Score =  199 bits (506), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 77/336 (22%), Positives = 130/336 (38%), Gaps = 58/336 (17%)

Query: 2   AVLMGGISSEREVSLSSGKACASALE---------DAGFKVSQID-------------VD 39
            +L GG S E E+S+ S  A    L+         D   K   ID               
Sbjct: 4   GLLFGGKSYEHEISIVSAVALKEVLDAQISSFIFLDGAHKFYLIDKKDMRSHFFSSGQYK 63

Query: 40  RSVGLVLAHLKP-------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           +S  LVL H                 +  N++HG  GEDG + + L+   + +    +  
Sbjct: 64  KSPELVLKHGGFYTHGLLGGKGISMSVLINLIHGGDGEDGKIASFLDFFGVSFIGPRVEG 123

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
             LS  K  +K +    G+ + P I + +  + +   +  P ++KP + GSS+GI VIK 
Sbjct: 124 CVLSYSKYFTKMLAKEKGINILPYIFLEQHDIGALQNLDYPLIVKPNRLGSSIGIRVIKD 183

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIE----LTCGVM-----GDASLDVTEIAVPKS 197
            + I    +    +    Q+LIE +  G++      C +      G     V E    K 
Sbjct: 184 AKDI--AYVLDEVFEFDSQVLIEPFKQGVKEYNLAGCKIQSEEEEGKFVFSVVE-EPHKK 240

Query: 198 DFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256
           ++  +E KY     +  V  A I   + ++++++  L +       I R DF    ++ +
Sbjct: 241 EWLGFEEKYLDFGRTQKVKQADISSHLEEKMRQIFQLIYDPFFVGAIIRCDFFV--INEE 298

Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           V+  EIN  PG     +F          F  LL  +
Sbjct: 299 VYLNEINPIPGSLAHYLFE--------DFSSLLEQI 326


>gi|315185431|gb|EFU19202.1| D-alanine--D-alanine ligase [Spirochaeta thermophila DSM 6578]
          Length = 648

 Score =  198 bits (505), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 69/298 (23%), Positives = 129/298 (43%), Gaps = 26/298 (8%)

Query: 24  SALEDA-GFKVSQIDVDRSVGLVLAHLK--PDLAFNVLHGNFGEDGL----VQAILELLE 76
           +AL++  G+  + +    ++   L  LK   D  FN+    F  D      V A+LE+L 
Sbjct: 344 AALKECTGYSFTYLSRHETLIQDLMRLKGKVDYVFNLCDEGFFNDPRKELHVPALLEMLG 403

Query: 77  IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGG 136
           IPYT +     A   DK   + V    GVPV  +  ++  ++  +     P ++KP  G 
Sbjct: 404 IPYTGATPQGLAFCYDKSLVRGVAKEMGVPVPRAFFIDPTSIVFEVPFGFPMIVKPNLGD 463

Query: 137 SSLGI---IVIKKDQSIPLDL-LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192
           SS GI    V+     +   +     ++ +   +L+E+++ G +LT G++G+ + D   +
Sbjct: 464 SSFGITQKSVVWSLDELSACISEIRDTFGYEKPVLVEEFLTGKDLTVGIIGNPTDDYMVL 523

Query: 193 AVPKSDF----------YSYELKYSSLN----STHVLPAKIPLDIYKEVQRLAFLAHQAI 238
            + + D+            YE K+   +    +   +PA +P +  K +        + +
Sbjct: 524 PIVEEDYSALPPELPRICGYEAKWLPDSPYWKALRSIPAGLPEETEKSIVEWCVRLFERL 583

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            CR  +R D+  D      + LE+N  PG        +MA  AG  +  +L  +++ A
Sbjct: 584 ECRDYARFDWRCDA-DGNPYLLEVNPNPGWCWDGHLAKMARLAGMEYPRMLEAILKAA 640


>gi|322378889|ref|ZP_08053306.1| D-alanine--D-alanine ligase [Helicobacter suis HS1]
 gi|321148699|gb|EFX43182.1| D-alanine--D-alanine ligase [Helicobacter suis HS1]
          Length = 350

 Score =  198 bits (505), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 77/336 (22%), Positives = 130/336 (38%), Gaps = 58/336 (17%)

Query: 2   AVLMGGISSEREVSLSSGKACASALE---------DAGFKVSQID-------------VD 39
            +L GG S E E+S+ S  A    L+         D   K   ID               
Sbjct: 6   GLLFGGKSYEHEISIVSAVALKEVLDAQISSFIFLDGAHKFYLIDKKDMRSHFFSSGQYK 65

Query: 40  RSVGLVLAHLKP-------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           +S  LVL H                 +  N++HG  GEDG + + L+   + +    +  
Sbjct: 66  KSPELVLKHGGFYTHGLLGGKGISMSVLINLIHGGDGEDGKIASFLDFFGVSFIGPRVEG 125

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
             LS  K  +K +    G+ + P I + +  + +   +  P ++KP + GSS+GI VIK 
Sbjct: 126 CVLSYSKYFTKMLAKEKGINILPYIFLEQHDIGALQNLDYPLIVKPNRLGSSIGIRVIKD 185

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIE----LTCGVM-----GDASLDVTEIAVPKS 197
            + I    +    +    Q+LIE +  G++      C +      G     V E    K 
Sbjct: 186 AKDI--AYVLDEVFEFDSQVLIEPFKQGVKEYNLAGCKIQSEEEEGKFVFSVVE-EPHKK 242

Query: 198 DFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256
           ++  +E KY     +  V  A I   + ++++++  L +       I R DF    ++ +
Sbjct: 243 EWLGFEEKYLDFGRTQKVKQADISSHLEEKMRQIFQLIYDPFFVGAIIRCDFFV--INEE 300

Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           V+  EIN  PG     +F          F  LL  +
Sbjct: 301 VYLNEINPIPGSLAHYLFE--------DFSSLLEQI 328


>gi|305432181|ref|ZP_07401345.1| D-alanine-D-alanine ligase [Campylobacter coli JV20]
 gi|304444724|gb|EFM37373.1| D-alanine-D-alanine ligase [Campylobacter coli JV20]
          Length = 346

 Score =  198 bits (505), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 68/330 (20%), Positives = 128/330 (38%), Gaps = 51/330 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALE--------DAGFKVSQIDVDR------------ 40
           +A+L GG S E E+S+ S       +         D   +   I  ++            
Sbjct: 3   LAILFGGNSYEHEISIVSAVVLKKVINTDLTFIFCDEKRRFYLIPSEKMNSKTFSGGAYQ 62

Query: 41  --------------SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
                                +L  D   N++HG  GEDG + ++LE  +I +    + A
Sbjct: 63  KEKELFLRQKAFYHKSLWSEKNLDLDCVINLIHGRDGEDGKIASLLEFFDIKFIGPRVEA 122

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           S LS +K  +K    S GV      ++ +           P ++KP + GSS+GI + K 
Sbjct: 123 SVLSFNKEFTKLYAQSVGVKTLDYQMLRKSQKQDFTA-HFPCILKPARLGSSIGISIAKN 181

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDVTEIAVP-KSDFYSYE 203
           ++ +  D  +   +     +L+E +   I+     G M       + I  P K +F ++E
Sbjct: 182 EKEL--DYAKDVGFEFDTDILVEDFKSNIKEYNLAGCMIKDEFIFSIIEEPKKKEFLNFE 239

Query: 204 LKYSSLNST-HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
            KY S +    ++ A +  ++ ++++      +  +    + R DF    L  +V+  EI
Sbjct: 240 QKYLSFSGHNELIEADLSEELKQKLKDNFAKIYNPLFKGALIRCDFFI--LDNEVYLNEI 297

Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           N  PG     +F          F +++  +
Sbjct: 298 NPNPGSLANYLF--------KDFNKIIEQL 319


>gi|124358354|gb|ABN05628.1| vancomycin resistance protein A [Enterococcus faecium]
 gi|124358356|gb|ABN05629.1| vancomycin resistance protein A [Enterococcus faecium]
          Length = 270

 Score =  198 bits (505), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 64/272 (23%), Positives = 114/272 (41%), Gaps = 44/272 (16%)

Query: 16  LSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP------------------------ 51
           + S    A+ +    ++   I + +S    +                             
Sbjct: 1   VKSAIEIAANINKEKYEPLYIGITKSGVWKMCEKPCAEWENDNCYSAVLSPDKKMHGLLV 60

Query: 52  -----------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
                      D+AF+ LHG  GEDG +Q + EL  IP+    I +SA+ MDK  +  V 
Sbjct: 61  KKNHEYEINHVDVAFSALHGKSGEDGSIQGLFELSGIPFVGCDIQSSAICMDKSLTYIVA 120

Query: 101 SSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160
            + G+      ++N+         + P  +KP + GSS G+  +     +  D    S+ 
Sbjct: 121 KNAGIATPAFWVINKDDRPVAATFTYPVFVKPARSGSSFGVKKVNSADEL--DYAIESAR 178

Query: 161 NHGDQLLIEQYVDGIELTCGVMGD-ASLDVTEIAVPKSDFYSY------ELKYSSLNSTH 213
            +  ++LIEQ V G E+ C V+G+ A+L V E+   +  +  +      E +  S N+  
Sbjct: 179 QYDSKILIEQAVSGCEVGCAVLGNSAALVVGEVDQIRLQYGIFRIHQEVEPEKGSENAVI 238

Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
            +PA +  +    +Q  A   ++A+GCRG++R
Sbjct: 239 TVPADLSAEERGRIQETAKKIYKALGCRGLAR 270


>gi|34556865|ref|NP_906680.1| D-alanyl-alanine synthetase A [Wolinella succinogenes DSM 1740]
 gi|39930816|sp|Q7MA71|DDL_WOLSU RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|34482580|emb|CAE09580.1| PUTATIVE D-ALANINE--D-ALANINE LIGASE [Wolinella succinogenes]
          Length = 345

 Score =  198 bits (504), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 71/313 (22%), Positives = 124/313 (39%), Gaps = 45/313 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLA------------- 47
           +AV+ GG S E E+S+ S  +    L         +D +R    + A             
Sbjct: 3   LAVIFGGASYEHEISIVSAISLKKILPALEH-FIFVDGNRDFYWIPASEMRSKHFADGIY 61

Query: 48  ----------------------HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
                                  +  D A N++HG  GEDG + ++LE   IP+    I 
Sbjct: 62  KKNPKLFLRPGGFYAKGLWGEKRVPFDTALNLIHGGDGEDGKLASLLEFFRIPFIGPRIE 121

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145
           AS +S +K  +K      GV   P +L  +     +     P ++KPL+ GSS+G+ + K
Sbjct: 122 ASVMSFNKHLTKLYAKERGVKTLPYLLARKNEK-REFGNEFPLIVKPLRLGSSIGVSIAK 180

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDVTEIAVP-KSDFYSY 202
             Q +  D     ++   +  L+E ++ GI+     G   +     + I  P K +F  +
Sbjct: 181 NRQEL--DYALDVAFEFDEAALLEPFMQGIKEYNLAGCKINGEYHFSIIEEPQKKEFLDF 238

Query: 203 ELKYSSLN-STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
           + KY   + +  +L A +     + ++      +       + R DF     +++VF  E
Sbjct: 239 DKKYLDFSRTQKLLKADLSEASERLLKEAFIKLYDDSFEGSLIRCDFFV--QNQEVFLNE 296

Query: 262 INVQPGMTPVSIF 274
           IN  PG     +F
Sbjct: 297 INPIPGSLANYLF 309


>gi|268323675|emb|CBH37263.1| conserved hypothetical protein, containing D-alanine--D-alanine
           ligase C-terminus domain [uncultured archaeon]
          Length = 720

 Score =  198 bits (504), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 72/296 (24%), Positives = 128/296 (43%), Gaps = 19/296 (6%)

Query: 17  SSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDL--------AFNVLHGNFGEDG-- 66
           ++ K  A +LE  G  V   + +  +   L    P +        AFN+ +G  GE    
Sbjct: 29  NTVKLVAESLEKEGHNVRIAEGNMYIIEKLQEFMPRVIEGERLGMAFNMAYGIQGESRYT 88

Query: 67  LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP 126
            + A+LE+L IPY  SG    +L++DK+ +K ++   G+P     + +    D    +  
Sbjct: 89  HLPAMLEMLGIPYVGSGPEGHSLALDKVITKILMQKQGIPTPNFWVYSTGDED-MSDVQY 147

Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA- 185
           P ++KP     S GI ++  ++ +   +          Q L+EQ++ G E   G++G+  
Sbjct: 148 PVIVKPKMEAVSYGIKIVDNEEDLRAAVKLVVI-EFKQQALVEQFIRGREFCVGLLGNGD 206

Query: 186 --SLDVTEIAVPKSD--FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241
             +  V EI +        + + K        + PAKI   +   + RL+  A  A+G R
Sbjct: 207 PEAFPVLEIDLENDPDAIQTVDDKKQKPRGK-ICPAKISQKLADVMVRLSKDAFHALGLR 265

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
             +R D   D     ++ LEIN    +     +   A  AGY +  L+  ++E A+
Sbjct: 266 DFARVDIRMDEAKN-IYLLEINSMASLGLTGSYVHAANVAGYDYARLVNKILEVAA 320


>gi|307718300|ref|YP_003873832.1| D-alanine-D-alanine ligase related protein [Spirochaeta thermophila
           DSM 6192]
 gi|306532025|gb|ADN01559.1| D-alanine-D-alanine ligase related protein [Spirochaeta thermophila
           DSM 6192]
          Length = 646

 Score =  198 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 69/298 (23%), Positives = 128/298 (42%), Gaps = 26/298 (8%)

Query: 24  SALEDA-GFKVSQIDVDRSVGLVLAHLK--PDLAFNVLHGNFGEDGL----VQAILELLE 76
           +AL++  G+  + +    ++   L  LK   D  FN+    F  D      V A+LE+L 
Sbjct: 343 AALKECTGYSFTYLSRHETLIQDLMRLKGKIDYVFNLCDEGFFNDPRKELHVPALLEMLG 402

Query: 77  IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGG 136
           IPYT +     A   DK   + V    GVPV  +  ++  ++  +     P ++KP  G 
Sbjct: 403 IPYTGATPQGLAFCYDKSLVRGVAKEMGVPVPRAFFIDPTSIVFEVPFGFPMIVKPNLGD 462

Query: 137 SSLGI---IVIKKDQSIPLDL-LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192
           SS GI    V+     +   +     ++ +   +L+E+++ G +LT G++G+   D   +
Sbjct: 463 SSFGITQKSVVWSLDELSACISEIRDTFGYEKPVLVEEFLTGKDLTVGIIGNPPDDYMVL 522

Query: 193 AVPKSDF----------YSYELKYSSLN----STHVLPAKIPLDIYKEVQRLAFLAHQAI 238
            + + D+            YE K+   +    +   +PA +P    K +        + +
Sbjct: 523 PIVEEDYSALPPELPRICGYEAKWLPDSPYWKALQSIPAGLPEATEKSIVEWCVRLFERL 582

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            CR  +R D+  D      + LE+N  PG        +MA  AG  + ++L  +++ A
Sbjct: 583 ECRDYARFDWRCDA-DGNPYLLEVNPNPGWCWDGHLAKMARLAGMEYPQMLQAILKAA 639


>gi|242309199|ref|ZP_04808354.1| ligase [Helicobacter pullorum MIT 98-5489]
 gi|239524240|gb|EEQ64106.1| ligase [Helicobacter pullorum MIT 98-5489]
          Length = 345

 Score =  198 bits (503), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 67/312 (21%), Positives = 120/312 (38%), Gaps = 43/312 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALE--------DAGFKVSQIDVDR------SVGLVL 46
           + VL GG S E E+S+ S       L         D       I  D+      S    L
Sbjct: 3   LCVLFGGSSYEHEISIVSAITLKKLLPSIETFVFLDGNHNFYLIPKDKMQSKFFSSKEYL 62

Query: 47  AHLKPDL--------------------AFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
             +K  L                      N++HG  GE+G++ ++L+   I Y      A
Sbjct: 63  KEMKIYLKVGGFYHKTLLGEKKLPMPMVLNLIHGGDGENGVIASLLDFYGIAYIGPRNPA 122

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
             LS DK  +K +  + G+      ++ +     +     P +IKP + GSS+GI +   
Sbjct: 123 CVLSFDKELTKLLAKNRGILSLDYQVLYKGAQ-KEIKFPFPVIIKPARLGSSIGIFIANN 181

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDVTEIAVP-KSDFYSYE 203
            + +  D     ++ + ++ ++E ++ GI+     G      +  + +  P K +F  +E
Sbjct: 182 QKEL--DYGLEEAFEYDNKAIVEPFISGIKEYNLAGYKSAQGIKFSFVEEPQKKEFLDFE 239

Query: 204 LKYSSLN-STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
            KY   + + +   A IP  + K +Q      ++ +    + R DF         +  EI
Sbjct: 240 KKYLDFSRTQNAKEADIPEALQKTLQDNFIKIYENLFEGALIRCDFFV--KDDLCYLNEI 297

Query: 263 NVQPGMTPVSIF 274
           N  PG     +F
Sbjct: 298 NPIPGSMANYLF 309


>gi|57242125|ref|ZP_00370065.1| D-alanine--D-alanine ligase [Campylobacter upsaliensis RM3195]
 gi|57017317|gb|EAL54098.1| D-alanine--D-alanine ligase [Campylobacter upsaliensis RM3195]
          Length = 346

 Score =  198 bits (503), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 71/312 (22%), Positives = 125/312 (40%), Gaps = 45/312 (14%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLA-------------- 47
           A+L GG S E E+S+ S       L++  +     D +R   L+ A              
Sbjct: 4   AILFGGNSYEHEISIVSAVVLKKVLDEEPY-FIFCDEEREFYLIKASNLNAKTFSSKAYK 62

Query: 48  ---------------------HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
                                 L+     N++HG  GEDG + A+ E   I +    + A
Sbjct: 63  KEKKLILKQGGFYLEGFLGEKKLEIKCVINLIHGRDGEDGKIAALFEFFNINFIGPRLEA 122

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           S LS +K  +K    S GV       + +    S    + P ++KP++ GSS+GI +   
Sbjct: 123 SVLSFNKELTKLYAKSVGVKTLDYFTLKKGLQTSFKP-NFPCILKPVRLGSSIGISIANN 181

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDVTEIAVP-KSDFYSYE 203
           ++ +  +  +   +   D LL+E +   I+     G M    L  + I  P K +F  +E
Sbjct: 182 EEEL--NYSKDVGFEFDDTLLVEDFKKDIKEYNLAGCMIGDELIFSIIEEPKKKEFLDFE 239

Query: 204 LKYSSLNST-HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
            KY S +    ++ A +  ++ ++++      +  +    + R DF    L  +V+  EI
Sbjct: 240 QKYLSFSGHSELIEADLSEELKEKLKESFSKIYNPLFKGALIRCDFFI--LDNEVYLNEI 297

Query: 263 NVQPGMTPVSIF 274
           N  PG     +F
Sbjct: 298 NSNPGSLANYLF 309


>gi|150019989|ref|YP_001305343.1| D-alanine--D-alanine ligase [Thermosipho melanesiensis BI429]
 gi|149792510|gb|ABR29958.1| D-alanine--D-alanine ligase [Thermosipho melanesiensis BI429]
          Length = 310

 Score =  197 bits (502), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 75/291 (25%), Positives = 139/291 (47%), Gaps = 21/291 (7%)

Query: 20  KACASALEDAGFKVSQIDVDRSVGLVLAHL-KPDLAFNVLHGNFGE--DGLVQAILELLE 76
           K   +A++DA  K  + ++ R     L  + K D  FN+ +    E     V ++L+ L 
Sbjct: 16  KKMINAIKDAISKKYKCEIVRFDEDFLRKINKYDFVFNLSNKGGKEVKQVHVPSVLDFLG 75

Query: 77  IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGG 136
           IPYT S     A+ +DK+ +K ++    +P     +V+   +   + I   Y++KP + G
Sbjct: 76  IPYTSSNTFTHAICLDKITTKIIMKQYNIPTPDFYVVDVGEI--PNYIDGKYIVKPPREG 133

Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGD---QLLIEQYVDGIELTCGVMGD---ASLDVT 190
           S+ GI       ++  DL +     H +     L+E+++DG E + GV+G+     L + 
Sbjct: 134 SAKGITKDSIVDNLE-DLKKQVKKIHDEFSQPALVEKFIDGREFSVGVIGNKKPEVLPIL 192

Query: 191 EIAVPK-----SDFYSYELK-YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244
           EI           FYSY +K Y    + ++ PA + +D+ K+++  A    + +  R  +
Sbjct: 193 EIDFSSLPKELERFYSYRVKHYYGEQTRYICPANLDVDLEKKIKYYAQKLFRVLNLRDYA 252

Query: 245 RSDFLFDPLSRKVFWLEINVQPGMTP-VSIFPEMAAYAGYSFRELLLWMVE 294
           R D        ++++LE+N  P + P  S   +MA  AG  + +L+L ++E
Sbjct: 253 RMDLRI--KGGEIYFLEVNSMPQLVPVYSDITKMAKAAGCDYDKLVLKILE 301


>gi|315638159|ref|ZP_07893341.1| D-alanine-D-alanine ligase [Campylobacter upsaliensis JV21]
 gi|315481695|gb|EFU72317.1| D-alanine-D-alanine ligase [Campylobacter upsaliensis JV21]
          Length = 347

 Score =  197 bits (502), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 71/313 (22%), Positives = 125/313 (39%), Gaps = 45/313 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLA------------- 47
           +A+L GG S E E+S+ S       L++  +     D +R   L+ A             
Sbjct: 4   LAILFGGNSYEHEISIVSAVVLKKVLDEEPY-FIFCDEEREFYLIKASNLNAKTFSSKAY 62

Query: 48  ----------------------HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
                                  L+     N++HG  GEDG + A+ E   I +    + 
Sbjct: 63  KKEKKLILKQGGFYLEGFLGEKKLEIKCVINLIHGRDGEDGKIAALFEFFNINFIGPRLE 122

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145
           AS LS +K  +K    S GV       + +    S    + P ++KP++ GSS+GI +  
Sbjct: 123 ASVLSFNKELTKLYAKSVGVKTLDYFTLKKGLQTSFKP-NFPCILKPVRLGSSIGISIAN 181

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDVTEIAVP-KSDFYSY 202
            ++ +     +   +   D LL+E +   I+     G M    L  + I  P K +F  +
Sbjct: 182 NEEELNYG--KDVGFEFDDTLLVEDFKKDIKEYNLAGCMIKDELIFSIIEEPKKKEFLDF 239

Query: 203 ELKYSSLNST-HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
           E KY S +    ++ A +  ++ ++++      +  +    + R DF    L  +V+  E
Sbjct: 240 EQKYLSFSGHSELIEADLSEELKEKLKEAFSKIYNPLFKGALIRCDFFI--LDNEVYLNE 297

Query: 262 INVQPGMTPVSIF 274
           IN  PG     +F
Sbjct: 298 INPNPGSLANYLF 310


>gi|255322239|ref|ZP_05363385.1| D-alanine--D-alanine ligase [Campylobacter showae RM3277]
 gi|255300612|gb|EET79883.1| D-alanine--D-alanine ligase [Campylobacter showae RM3277]
          Length = 344

 Score =  197 bits (502), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 75/314 (23%), Positives = 131/314 (41%), Gaps = 51/314 (16%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL--------------- 46
           AV+ G  S E E+S+ S  A    L++   +   I  D+     L               
Sbjct: 4   AVIFGAKSYEHEISIVSAIALKKVLKN---EPLFIFCDKFREFYLINGADMKANFFSSGK 60

Query: 47  ----------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84
                                   ++ D+  N++HG  GEDG + A+LE   + Y    +
Sbjct: 61  YKNAKKLTLKQGGFFAGGLLGEKKIEADVFINLVHGMDGEDGKIAALLEFYGLSYIGPRV 120

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
            ASALS +K  +K +    GV      +V+R   +    +  P ++KPL+ GSS+G+ VI
Sbjct: 121 EASALSYNKELTKLLAQKAGVKTLNYEVVSR---EKAPSLPLPVILKPLRLGSSIGVSVI 177

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDVTEIAVP-KSDFYS 201
           K    +   L    ++    ++L+E +++G++     G   D  +  + I  P K +F  
Sbjct: 178 KDAGELEYGLDV--AYEFDKEILVEPFIEGVKEYNLAGCKADGEIKFSIIEEPKKKEFLD 235

Query: 202 YELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260
           YE KY S  N +    A I  ++  ++++     +       + R DF    ++ +V+  
Sbjct: 236 YEQKYMSFSNESRAREANISAELAAKLKQSFERIYDCGFNGALIRCDFF--EVNGEVYLN 293

Query: 261 EINVQPGMTPVSIF 274
           EIN  PG     +F
Sbjct: 294 EINPNPGSMANYLF 307


>gi|124358358|gb|ABN05630.1| vancomycin resistance protein A [Enterococcus faecalis]
          Length = 268

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 64/270 (23%), Positives = 113/270 (41%), Gaps = 44/270 (16%)

Query: 18  SGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP-------------------------- 51
           S    A+ +    ++   I + +S    +                               
Sbjct: 1   SAIEIAANINKEKYEPLYIGITKSGVWKMCEKPCAEWENDNCYSAVLSPDKKMHGLLVKK 60

Query: 52  ---------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS 102
                    D+AF+ LHG  GEDG +Q + EL  IP+    I +SA+ MDK  +  V  +
Sbjct: 61  NHEYEINHVDVAFSALHGKSGEDGSIQGLFELSGIPFVGCDIQSSAICMDKSLTYIVAKN 120

Query: 103 CGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
            G+      ++N+         + P  +KP + GSS G+  +     +  D    S+  +
Sbjct: 121 AGIATPAFWVINKDDRPVAATFTYPVFVKPARSGSSFGVKKVNSADEL--DYAIESARQY 178

Query: 163 GDQLLIEQYVDGIELTCGVMGD-ASLDVTEIAVPKSDFYSY------ELKYSSLNSTHVL 215
             ++LIEQ V G E+ C V+G+ A+L V E+   +  +  +      E +  S N+   +
Sbjct: 179 DSKILIEQAVSGCEVGCAVLGNSAALVVGEVDQIRLQYGIFRIHQEVEPEKGSENAVITV 238

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
           PA +  +    +Q  A   ++A+GCRG++R
Sbjct: 239 PADLSAEERGRIQETAKKIYKALGCRGLAR 268


>gi|58698111|ref|ZP_00373034.1| D-alanine-D-alanine ligase [Wolbachia endosymbiont of Drosophila
           ananassae]
 gi|58535357|gb|EAL59433.1| D-alanine-D-alanine ligase [Wolbachia endosymbiont of Drosophila
           ananassae]
          Length = 213

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 75/197 (38%), Positives = 122/197 (61%), Gaps = 3/197 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +A+L GG S ERE+SL SGKA   AL+   +   +IDVD ++   L  + P LAF  LHG
Sbjct: 7   IAILSGGFSCEREISLMSGKAVKKALDSLSYNAIEIDVDSNIAEKLKKINPGLAFIALHG 66

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG +Q +LE+L I YTHSG++ASA++++K+ SK +  S  +      +++R  +  
Sbjct: 67  PYGEDGCIQGLLEILGIKYTHSGVMASAVAINKVMSKHIFRSLNIDTPKGYVISREDVLK 126

Query: 121 QHL-ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
            ++ I  PYV+KP+  GSS+G+ +I   +   L+L  +SS    +++++E+Y+ GIEL  
Sbjct: 127 NNIKIDYPYVLKPINEGSSIGVYIIFSHEDY-LELKDNSS-TIMEKMIVEEYIPGIELHT 184

Query: 180 GVMGDASLDVTEIAVPK 196
            V+ D ++   E+   K
Sbjct: 185 AVLLDEAIGTIEVRPKK 201


>gi|78777406|ref|YP_393721.1| D-alanyl-alanine synthetase A [Sulfurimonas denitrificans DSM 1251]
 gi|123550178|sp|Q30R95|DDL_SULDN RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|78497946|gb|ABB44486.1| D-alanine--D-alanine ligase [Sulfurimonas denitrificans DSM 1251]
          Length = 345

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 74/310 (23%), Positives = 130/310 (41%), Gaps = 43/310 (13%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV----------------- 45
           +L GG S E E+S+ S       L +        D D +  L+                 
Sbjct: 5   ILFGGASFEHEISIVSAITLKEKLSNFELNFIFCDQDHTFYLINASKMRATTFSRGEYKK 64

Query: 46  -----LAHLKP---------DL---AFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
                L+H            D+     N++HG  GEDG + AIL+   I Y    + AS 
Sbjct: 65  MPKLTLSHGSFVQKSLFGSVDISGTVLNLIHGGDGEDGTIAAILDFFSIKYIGPRVDASV 124

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQ 148
            S DK  +K +  + GV    S  ++     S   I+ P ++KP + GSS+G+ ++K   
Sbjct: 125 FSYDKRYTKWLCHARGVKCVESQELSSSE-HSNIKIAYPIIVKPSRLGSSIGVSIVK--D 181

Query: 149 SIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDVTEIAVP-KSDFYSYELK 205
              LD    S++   + +++E +++G++     G         + I  P K +F  +E K
Sbjct: 182 ESKLDYALDSAFEFDNTVIVEPFLEGVKEYNLAGFSAGKKFYFSIIEEPQKEEFLDFEKK 241

Query: 206 YSSLN-STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           Y   + S +V  A+I  ++  +++      ++ +    + R DF    ++ +VF  EIN 
Sbjct: 242 YMDFSRSGNVDSAEISKELESKLRASFEKVYKNLFEGALIRCDFFV--VNGEVFLNEINP 299

Query: 265 QPGMTPVSIF 274
            PG     +F
Sbjct: 300 IPGSMANYLF 309


>gi|78358082|ref|YP_389531.1| D-alanine--D-alanine ligase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78220487|gb|ABB39836.1| D-alanine--D-alanine ligase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 349

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 72/307 (23%), Positives = 131/307 (42%), Gaps = 21/307 (6%)

Query: 7   GISSEREVSLSSG---KACASALEDAGFKVSQIDVDRSVGLVLAH-LKPDLAFNVLHG-- 60
           G S E      S    +   +AL+  G++  +I    ++   L    + D+ FN+  G  
Sbjct: 17  GYSEEEAAEFDSPATIEGIETALQALGYETQRIGALPALAAALLQGRRWDIVFNIAEGCH 76

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FG +  V A+L+   +PY  S  +   + + K  +K +V   G+P    ++++     +
Sbjct: 77  GFGRESQVPALLDYYSVPYVFSDPMTLGICLHKGMTKHIVRDNGIPTADFVVISDPAEAA 136

Query: 121 QHLISPPYVIKPLKGGSSLGI---IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
              +  P  +KP+  G+ +G+     ++  Q +     +     H   +L+E ++ G EL
Sbjct: 137 AVSLPYPLFVKPVAEGTGIGVGAASKVQNPQELAAACAR-LIDRHRQPVLVETFLCGREL 195

Query: 178 TCGVMGD-------ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
           T G+ G         +L+V      +SD Y Y  K   L       A       ++ + +
Sbjct: 196 TVGITGTGAGARTLGALEVVFAPAAESDVYGYVNKAEYLERVQYHLA--DDADAQKARHV 253

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP-VSIFPEMAAYAGYSFRELL 289
           A  A +A+GCR   R D  FD       ++E+N   G+ P  S  P M   AG  + +L+
Sbjct: 254 ALAAWRALGCRDGGRVDLRFDAR-GVPNFIEVNPLAGLNPVNSDLPIMCYKAGLRYEQLI 312

Query: 290 LWMVEDA 296
             ++E A
Sbjct: 313 GQIMESA 319


>gi|306520162|ref|ZP_07406509.1| putative D-alanine:D-alanine ligase (putative
           vancomycin/teicoplanin A-type resistance protein)
           [Clostridium difficile QCD-32g58]
          Length = 313

 Score =  196 bits (500), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 70/204 (34%), Positives = 111/204 (54%), Gaps = 8/204 (3%)

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV 105
           + + K D  F VLHG  GEDG VQ + EL  I     G L+SAL MDK +S ++V S G+
Sbjct: 111 IKYTKLDFVFPVLHGKNGEDGTVQGLFELAGIQVIGCGTLSSALCMDKDKSHKLVHSEGI 170

Query: 106 PVCPSILVNRFT----MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN 161
            V  SIL+         +    ++ P  IKP++ GSS GI  I K + + + +    ++ 
Sbjct: 171 KVPKSILLKYSDKFNVAELSKDLTYPLFIKPVRAGSSFGISKIYKKEELQVAVDL--AFE 228

Query: 162 HGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK--SDFYSYELKYSSLNSTHVLPAKI 219
           H ++++IE+ +DG E+ C V+G+  L V  +   +    F+ Y  KY+  +S   +PA+I
Sbjct: 229 HDNEVIIEENIDGFEVGCAVLGNDDLLVGRVDEIELSKGFFDYTEKYTLKSSKIHMPARI 288

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGI 243
            LD  K +Q  A + ++ +GC G 
Sbjct: 289 DLDCEKRIQETAKIIYRTLGCSGF 312



 Score = 61.7 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 21/44 (47%)

Query: 1  MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL 44
          +AV+ GG S+E +VSL S  A    L    + +  I + R    
Sbjct: 6  IAVIFGGNSTEYDVSLQSAFAVLENLNTEKYDIIPIGITREGNW 49


>gi|315453894|ref|YP_004074164.1| putative D-alanine--D-alanine ligase [Helicobacter felis ATCC
           49179]
 gi|315132946|emb|CBY83574.1| putative D-alanine--D-alanine ligase [Helicobacter felis ATCC
           49179]
          Length = 344

 Score =  196 bits (500), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 70/313 (22%), Positives = 120/313 (38%), Gaps = 44/313 (14%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---------------- 45
            VL GG+S E E+S+ S  A    L         +D  R+  L+                
Sbjct: 4   GVLFGGVSYEHEISIVSAVALKEVLGTKIECFIFLDGARNFYLISSKDMRSNFFAKGQYK 63

Query: 46  -------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
                                 L   +  N++HG  GEDG + ++LE   +P+    + A
Sbjct: 64  KCPKLVLKQNGFYMQGFLGEKQLNFSMLINLVHGGDGEDGKLASMLEFFNLPFIGPRVEA 123

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
             +SM+K  +K      GV V P + ++     +   +  P + KP   GSS+GI VI +
Sbjct: 124 CTVSMNKYFTKMFAKERGVKVLPYVFLDSHDNSALENLDYPLIAKPNHLGSSIGISVIHE 183

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMG-DASLDVTEIAVP-KSDFYSY 202
            + +   L +   +    Q ++E +  G++     G MG D     + I  P K +   +
Sbjct: 184 PKDVAYGLDEV--FEFDSQAIVEPFKAGVKEYNLAGCMGQDGEFIFSMIEEPTKKELLGF 241

Query: 203 ELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
           E KY     +  +  A I   +  ++Q      +       + R DF    +  +++  E
Sbjct: 242 EEKYLDFGRTQTISKANISPHLELQMQNAFKKLYDPFFIGALIRCDFFV--IDNEIYLNE 299

Query: 262 INVQPGMTPVSIF 274
           IN  PG     +F
Sbjct: 300 INPIPGSLAHYLF 312


>gi|325972391|ref|YP_004248582.1| D-alanine--D-alanine ligase [Spirochaeta sp. Buddy]
 gi|324027629|gb|ADY14388.1| D-alanine--D-alanine ligase [Spirochaeta sp. Buddy]
          Length = 325

 Score =  196 bits (499), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 71/296 (23%), Positives = 130/296 (43%), Gaps = 18/296 (6%)

Query: 15  SLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK-PDLAFNVLHGNFG--EDGLVQAI 71
           S+ +  A  +AL+  G +  +I   +++   L   K  DL FN+  G FG   + ++ A+
Sbjct: 28  SIVTIDAIDAALQKLGHQTVRIGNVKALVGYLGEGKRCDLVFNIAEGLFGLLRESVIPAL 87

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIK 131
           L+  +IPY  S     A+ + K  +K+VV   GV      +++      Q  +  P  +K
Sbjct: 88  LDAYQIPYVFSDSFVLAICLHKGFTKEVVRKAGVATADFCVLSSSDDWKQVSLPYPLFLK 147

Query: 132 PLKGGSSLGI---IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG----- 183
           P+ GG+ +GI     +   + +   +  +    +   +L+E Y+ G E T G+ G     
Sbjct: 148 PVAGGTGIGITASSKVTNPKDLQK-VSGAMLAAYQQPVLVETYLGGREFTVGITGTGDEA 206

Query: 184 --DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241
                +++          YSY+ K     +T     +     +K  + +A  A +A+GCR
Sbjct: 207 QSTGVMEIIIDHSSDGGIYSYKTKQEYETTTRY--ERPDESAWKASEAVALAAWRALGCR 264

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPV-SIFPEMAAYAGYSFRELLLWMVEDA 296
              R D   D     V +LE+N   G+ P+ S  P ++   G  + EL+  ++  A
Sbjct: 265 DGGRIDVKMDEK-GVVHFLEVNPLAGLHPIDSDLPILSRMHGLGYDELIARIMHSA 319


>gi|42572325|ref|NP_974258.1| D-alanine--D-alanine ligase family [Arabidopsis thaliana]
 gi|332641163|gb|AEE74684.1| D-alanine--D-alanine ligase family protein [Arabidopsis thaliana]
          Length = 937

 Score =  196 bits (499), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 86/379 (22%), Positives = 143/379 (37%), Gaps = 80/379 (21%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKV--SQIDVD------------------- 39
           + ++ GG S+ER +SL+S ++    ++  G  V    ID D                   
Sbjct: 80  VGLICGGPSAERGISLNSARSVLDHIQGDGINVSCYYIDPDLKAFAISSAQVYSNTPSDF 139

Query: 40  -----------RSVGLVLAHL--KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
                       S+  +  HL    D+ F V+HG FGEDG +Q +LE   IP+  +G   
Sbjct: 140 DFKLESLAQGFSSLSELAEHLVSAVDIVFPVIHGRFGEDGGIQELLESHNIPFVGTGSRE 199

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVN-----------RFTMDSQHLISPPYVIKPLKG 135
              + DK  +   +   G    P+ LV             FT +   L     V+KP K 
Sbjct: 200 CFRAFDKYEASLELKELGFMTVPNYLVQGTGVDKSEIALWFTDNQLDLEMGKVVVKPAKA 259

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAV 194
           GSS+G+ V            +       D++++E ++ D  E T  V+   S  V    V
Sbjct: 260 GSSIGVKVAFGVNDSIKKATELILEGIDDRVVVEVFIEDAYEFTAIVLDVGSGSVCHPVV 319

Query: 195 ----------------PKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
                            ++  + Y  KY  +   T+  P + P+ + K ++  A L  Q 
Sbjct: 320 LMPTEVQLQFHGIGDPKENAIFDYRRKYLPTQQVTYHTPPRFPIHVIKSIREEASLIFQK 379

Query: 238 IGCRGISRSDFLFDPLS----------------RKVFWLEINVQPGMTPVSIFPEMAAYA 281
           +G R  +R D  +   +                  + + +IN+  GM   S   + A+  
Sbjct: 380 LGLRDFARIDGWYLAPNSNLSSPVSETLGGTKSGDIIFTDINLISGMEQTSFLFQQASKV 439

Query: 282 GYSFRELLLWMVEDASCLR 300
           G+S   +L  +V  A C R
Sbjct: 440 GFSHSNILRTIVHRA-CSR 457



 Score =  132 bits (333), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 61/289 (21%), Positives = 103/289 (35%), Gaps = 62/289 (21%)

Query: 54  AFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS---CGVPV--- 107
            F  +HG  GEDG +Q +LE   + YT  G+LAS   MDK+ + Q +S+    G+     
Sbjct: 626 VFIAVHGGIGEDGTLQGLLEDEGVSYTGPGVLASRTCMDKVMTSQALSNLSEFGIHTISK 685

Query: 108 ----CPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIP-------- 151
                  I+   F      LI         +KP K G S G+  +   + +         
Sbjct: 686 DVKRTEDIMHETFPNVWDELIKKLQCLTLCVKPAKDGCSTGVARLCSSEDLAVYVQALKD 745

Query: 152 -----------------------LDLLQSSSWNHGDQLLIEQ------YVDGIE----LT 178
                                   + L    +   D++++           G      +T
Sbjct: 746 CIPRIPPNTLSKTHGMIEMPNPTPEFLIFEPFVETDEIIVSSKAKQQLSWKGRRRWVEMT 805

Query: 179 CGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK---IPLDIYKEVQRLA 231
            GV+G      SL  +       D  S E K+      ++ P     +  +  +  ++  
Sbjct: 806 VGVIGKRGSMHSLSPSLTVKESGDILSLEEKFQGGTGINLTPPPPTIMSKEALERCKQGI 865

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280
            L  + +G  G SR D      + +V  +E+N  PGMTP ++  + A  
Sbjct: 866 ELIAETLGLEGFSRIDAFVHVETGEVLVIEVNTVPGMTPSTVLIQQALA 914



 Score = 37.8 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 11/26 (42%), Positives = 16/26 (61%)

Query: 3   VLMGGISSEREVSLSSGKACASALED 28
           V+ GG +SER+VS+ SG      L+ 
Sbjct: 489 VIFGGDTSERQVSVMSGTNVWVNLQR 514


>gi|157363761|ref|YP_001470528.1| D-alanine--D-alanine ligase [Thermotoga lettingae TMO]
 gi|157314365|gb|ABV33464.1| D-alanine--D-alanine ligase [Thermotoga lettingae TMO]
          Length = 305

 Score =  196 bits (498), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 82/287 (28%), Positives = 137/287 (47%), Gaps = 18/287 (6%)

Query: 20  KACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPY 79
           ++    L    F+   +        V    + D  FN+          V AILELL+IP 
Sbjct: 21  QSVFETLSKH-FEAELV--AFEDQFVDKVTQFDAVFNL--STAAMQTHVPAILELLKIPS 75

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSL 139
           T SGI+  AL +DK  +K +++  GVP    I +         +   P +IKP + GS+ 
Sbjct: 76  TGSGIIGHALCIDKTITKIILNHYGVPTPKFISLEPGQETIPPVDFYPVIIKPSREGSAR 135

Query: 140 GI---IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA--- 193
           G+    V+K+D ++   +    S       LIEQ+VDG E + G++    L + EI    
Sbjct: 136 GLSADSVVKEDFALKKAVKVIHS-EFHQPALIEQFVDGREFSVGIVAGEILPILEIDFST 194

Query: 194 VPKS--DFYSYELK-YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
           +P     FYSY +K Y    + ++ PA+I  ++   + + A  A +A+  R  +R D   
Sbjct: 195 LPDGLERFYSYRVKHYYGEQTRYICPAQIDTELKDRISKYALTAFKALRLRNYARMDLRV 254

Query: 251 DPLSRKVFWLEINVQPGMTP-VSIFPEMAAYAGYSFRELLLWMVEDA 296
                ++++LE+N  P +TP  S   +MA  AGY++ +L++ +  DA
Sbjct: 255 --KDGQIYFLEVNSLPMLTPGYSDIVKMAEAAGYTYEDLIMKIFMDA 299


>gi|42572327|ref|NP_974259.1| D-alanine--D-alanine ligase family [Arabidopsis thaliana]
 gi|332641165|gb|AEE74686.1| D-alanine--D-alanine ligase family protein [Arabidopsis thaliana]
          Length = 845

 Score =  196 bits (498), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 86/379 (22%), Positives = 143/379 (37%), Gaps = 80/379 (21%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKV--SQIDVD------------------- 39
           + ++ GG S+ER +SL+S ++    ++  G  V    ID D                   
Sbjct: 80  VGLICGGPSAERGISLNSARSVLDHIQGDGINVSCYYIDPDLKAFAISSAQVYSNTPSDF 139

Query: 40  -----------RSVGLVLAHL--KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
                       S+  +  HL    D+ F V+HG FGEDG +Q +LE   IP+  +G   
Sbjct: 140 DFKLESLAQGFSSLSELAEHLVSAVDIVFPVIHGRFGEDGGIQELLESHNIPFVGTGSRE 199

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVN-----------RFTMDSQHLISPPYVIKPLKG 135
              + DK  +   +   G    P+ LV             FT +   L     V+KP K 
Sbjct: 200 CFRAFDKYEASLELKELGFMTVPNYLVQGTGVDKSEIALWFTDNQLDLEMGKVVVKPAKA 259

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAV 194
           GSS+G+ V            +       D++++E ++ D  E T  V+   S  V    V
Sbjct: 260 GSSIGVKVAFGVNDSIKKATELILEGIDDRVVVEVFIEDAYEFTAIVLDVGSGSVCHPVV 319

Query: 195 ----------------PKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
                            ++  + Y  KY  +   T+  P + P+ + K ++  A L  Q 
Sbjct: 320 LMPTEVQLQFHGIGDPKENAIFDYRRKYLPTQQVTYHTPPRFPIHVIKSIREEASLIFQK 379

Query: 238 IGCRGISRSDFLFDPLS----------------RKVFWLEINVQPGMTPVSIFPEMAAYA 281
           +G R  +R D  +   +                  + + +IN+  GM   S   + A+  
Sbjct: 380 LGLRDFARIDGWYLAPNSNLSSPVSETLGGTKSGDIIFTDINLISGMEQTSFLFQQASKV 439

Query: 282 GYSFRELLLWMVEDASCLR 300
           G+S   +L  +V  A C R
Sbjct: 440 GFSHSNILRTIVHRA-CSR 457



 Score = 77.5 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 32/112 (28%), Positives = 48/112 (42%), Gaps = 14/112 (12%)

Query: 54  AFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS---CGVPV--- 107
            F  +HG  GEDG +Q +LE   + YT  G+LAS   MDK+ + Q +S+    G+     
Sbjct: 626 VFIAVHGGIGEDGTLQGLLEDEGVSYTGPGVLASRTCMDKVMTSQALSNLSEFGIHTISK 685

Query: 108 ----CPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIP 151
                  I+   F      LI         +KP K G S G+  +   + + 
Sbjct: 686 DVKRTEDIMHETFPNVWDELIKKLQCLTLCVKPAKDGCSTGVARLCSSEDLA 737



 Score = 37.8 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 11/26 (42%), Positives = 16/26 (61%)

Query: 3   VLMGGISSEREVSLSSGKACASALED 28
           V+ GG +SER+VS+ SG      L+ 
Sbjct: 489 VIFGGDTSERQVSVMSGTNVWVNLQR 514


>gi|297833634|ref|XP_002884699.1| D-alanine--D-alanine ligase family [Arabidopsis lyrata subsp.
           lyrata]
 gi|297330539|gb|EFH60958.1| D-alanine--D-alanine ligase family [Arabidopsis lyrata subsp.
           lyrata]
          Length = 943

 Score =  196 bits (498), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 83/378 (21%), Positives = 141/378 (37%), Gaps = 79/378 (20%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKV--SQIDVD----------------RSV 42
           + ++ GG S+ER +SL+S ++    ++  G  V    ID D                   
Sbjct: 81  VGLICGGPSAERGISLNSARSVLDHIQGDGISVSCYYIDPDLKAFAISSAQVYSNTPSDF 140

Query: 43  GLVLAHLK----------------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
              L  L                  D+ F V+HG FGEDG +Q +LE   IP+  +G   
Sbjct: 141 DFKLESLAQGFSSLSKFAEHLVSAVDIVFPVIHGRFGEDGGIQELLESQNIPFVGTGSRE 200

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP-----------PYVIKPLKG 135
              + DK  +   +   G    P+ LV    +D   +                V+KP K 
Sbjct: 201 CIRAFDKYEASLELKELGFMTVPNYLVQGTEVDKSEIAQWFTDNQLDLEMGKVVVKPAKA 260

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVM----GDASLDVT 190
           GSS+G+ V           ++       D++++E ++ D  E T  V+    G     V 
Sbjct: 261 GSSIGVKVAFGVNDSIKKAIELILEGIDDRVVVEVFIEDAYEFTAIVLDVGSGSGCHPVV 320

Query: 191 EIAV------------PKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
            +               ++  + Y  KY  +   T+  P + P+ + K ++  A L  + 
Sbjct: 321 LMPTEVQLQFHGSGDLQENAIFDYRRKYLPTQQVTYHTPPRFPIHVIKSIREEASLIFKK 380

Query: 238 IGCRGISRSDFLFD---------------PLSRKVFWLEINVQPGMTPVSIFPEMAAYAG 282
           +G R  +R D  +                P S  + + +IN+  GM   S   + A+  G
Sbjct: 381 LGLRDFARIDGWYLAPNSNLSSASETLGGPESGDIIFTDINLISGMEQTSFLFQQASKVG 440

Query: 283 YSFRELLLWMVEDASCLR 300
           +S   +L  +V  A C R
Sbjct: 441 FSHSNILRTVVHRA-CSR 457



 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 62/288 (21%), Positives = 104/288 (36%), Gaps = 62/288 (21%)

Query: 55  FNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC---GVPV---- 107
           +  +HG  GEDG +QA+LE   + YT  G+LAS   MDK+ + Q +S     G+      
Sbjct: 633 YIFMHGGIGEDGTLQALLEDEGVSYTGPGVLASRTCMDKVMTSQALSHLSELGIHTISKD 692

Query: 108 ---CPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIP--------- 151
                 I+          LIS        +KP K G S G+  +   + +          
Sbjct: 693 VRRTEDIMHETIPNVWDELISKFQCLTLCVKPAKDGCSTGVARLCCSEDLAVYVQALKDC 752

Query: 152 ----------------------LDLLQSSSWNHGDQLLIEQYVD------GIE----LTC 179
                                  + L    +   D++++   V       G      +T 
Sbjct: 753 LLRIPPNTLSKTHGTIEMPNPTPEFLIFEPFVETDEIIVSSKVKQQLSWKGRRRWVEMTV 812

Query: 180 GVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK---IPLDIYKEVQRLAF 232
           GV+G      SL  +       D  S E K+      ++ P     +  +  +  ++   
Sbjct: 813 GVIGKRGSMHSLSPSLTVKESGDILSLEEKFQGGTGINLTPPPPTIMSKEALERCKQRIE 872

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280
           L  + +G  G SR D      + +V  +E+N  PGMTP ++  + A  
Sbjct: 873 LIAETLGLEGFSRIDAFVHVETGEVLVIEVNTVPGMTPSTVLIQQALA 920



 Score = 37.4 bits (86), Expect = 2.7,   Method: Composition-based stats.
 Identities = 10/20 (50%), Positives = 14/20 (70%)

Query: 3   VLMGGISSEREVSLSSGKAC 22
           V+ GG +SER+VS+ SG   
Sbjct: 489 VIFGGDTSERQVSVMSGTNV 508


>gi|224419173|ref|ZP_03657179.1| D-alanyl-alanine synthetase A [Helicobacter canadensis MIT 98-5491]
 gi|253828106|ref|ZP_04870991.1| D-alanine--D-alanine ligase [Helicobacter canadensis MIT 98-5491]
 gi|313142679|ref|ZP_07804872.1| ligase [Helicobacter canadensis MIT 98-5491]
 gi|253511512|gb|EES90171.1| D-alanine--D-alanine ligase [Helicobacter canadensis MIT 98-5491]
 gi|313131710|gb|EFR49327.1| ligase [Helicobacter canadensis MIT 98-5491]
          Length = 345

 Score =  195 bits (497), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 71/310 (22%), Positives = 123/310 (39%), Gaps = 45/310 (14%)

Query: 4   LMGGISSEREVSLSSGKACAS---------ALEDAGFKVSQIDVDR-------------- 40
           L GG S E E+S+ S  A             L+D       I  D+              
Sbjct: 6   LFGGSSYEHEISIVSAIALKKLLGNVEYFIFLDDT-HTFYLIPKDKMQSKFFSTKAYLKA 64

Query: 41  ------------SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
                               L   +  N++HG  GEDG V ++L+   I Y      A  
Sbjct: 65  TRIYPKNGGFYQKTLWGEKKLPLPIVVNLIHGADGEDGRVASLLDFYGINYIGPRNPACV 124

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQ 148
           LS DK  +K +   CGV      +V++ ++  +  +  P ++KP + GSS+GI V+ +++
Sbjct: 125 LSFDKELTKMLAKECGVLSLDYQMVHKDSI-PKVTLPFPLIVKPARLGSSIGISVVYEEK 183

Query: 149 SIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDVTEIAVP-KSDFYSYELK 205
            +   + +  ++ + D+ +IE +V GI+     G      +  + I  P K +F  +E K
Sbjct: 184 ELEYAIQE--AFEYDDKAIIEPFVSGIKEYNIAGYKSKEGMHFSFIEEPQKKEFLDFEKK 241

Query: 206 YSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           Y   + T     A+I   + + +Q      +  +    + R DF       + +  EIN 
Sbjct: 242 YLDFSRTESAKEAEISESLKQTLQENFTKIYGNLFDGALIRCDFFVKE--NQCYLNEINP 299

Query: 265 QPGMTPVSIF 274
            PG     +F
Sbjct: 300 IPGSLANYLF 309


>gi|302803947|ref|XP_002983726.1| hypothetical protein SELMODRAFT_180525 [Selaginella moellendorffii]
 gi|300148563|gb|EFJ15222.1| hypothetical protein SELMODRAFT_180525 [Selaginella moellendorffii]
          Length = 857

 Score =  195 bits (497), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 83/369 (22%), Positives = 147/369 (39%), Gaps = 70/369 (18%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSV------------------ 42
           +A++ GG S+ER +SL+S ++    L+    +V    +D+ +                  
Sbjct: 24  VALICGGPSAERGISLNSARSVLDHLQAEDVEVDCYYMDQQLRAYAISPSQMYCNTPSDF 83

Query: 43  --------------GLVLAHLK--PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
                            L  LK   D+ F V+HG FGEDG +Q +LE   IP+  +G  A
Sbjct: 84  DFKLHSLAQCFTSQADFLRRLKSSVDIVFPVIHGKFGEDGGLQELLESAGIPFVGTGSSA 143

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP-----------PYVIKPLKG 135
           +  + DK  + + +S  G    PS L++   +D   L+               V+KP K 
Sbjct: 144 ARCAFDKYEAAKELSRHGFVTIPSFLIDSPEIDKAALVEWFKANDLNPSSDRVVVKPAKS 203

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDA--------S 186
           GSS+G+ V      +  D          D++++E ++ G  E T  ++           +
Sbjct: 204 GSSIGVTVAHGLDEVIRDAETLLKEGIDDRIVVEVFLQGCTEFTVIILDTGSGEQVQPVA 263

Query: 187 LDVTEIAVPKSD-------FYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           L  TE+ +   D        ++Y  KY  +   ++  P + P+   + ++  A      +
Sbjct: 264 LLPTEVELLHGDGQSIGEKIFNYRRKYLPTRQVSYHTPPRFPVQTIQSIRSGASKLFTLL 323

Query: 239 GCRGISRSDFLFDPLSRK--------VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             R  +R D    P S          V + ++N+  GM   S   + AA  G S R++L 
Sbjct: 324 NLRDFARVDGWLLPPSSSFNKSNDFLVVFSDVNLVSGMEQTSFLFQQAAQVGLSHRDVLR 383

Query: 291 WMVEDASCL 299
            ++  A   
Sbjct: 384 LVLNRARTR 392



 Score =  120 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 69/325 (21%), Positives = 118/325 (36%), Gaps = 71/325 (21%)

Query: 15  SLSSGKACASALEDAG----FKV-SQIDVDRSVGLVLAHLKPD--LAFNVLHGNFGEDGL 67
           SL       S L  +G    + V S +    S+   + H K D  + F  +HG+ GE+G+
Sbjct: 504 SLK--AQVMSELSSSGSKVDYNVGSGVPTKLSMSEWIQHAKDDDAIVFIAVHGDIGENGI 561

Query: 68  VQAILELLEIPYTHSGILASALSMDKM---RSKQVVSSCGVPVCPSI------LVNRFTM 118
           +Q +LE   IP+T SG+ AS + MDK     +   +SS GV     +      L++    
Sbjct: 562 LQEMLEAKRIPFTGSGVKASRICMDKAVTGHTISPLSSNGVYSAKRVVYKTAELLHDCGD 621

Query: 119 DSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSI--------------------P 151
           +SQ  +S           +KP   G S G+  +   + +                     
Sbjct: 622 NSQLWLSLQDKLEDSSICVKPAADGCSTGVARLCCARDLTVYLTALKEKLPRLLPGSLGK 681

Query: 152 LDLLQSSSWNHGDQLLIEQYV-------------------DGIELTCGVMGDA----SLD 188
              +        D L+ E ++                     +E+T GV+G      +L 
Sbjct: 682 PHGIIELPATIPDSLIFEPFIQTDDILVCEESQIAWEGKHRWVEITAGVIGKKGAMHALH 741

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKI---PLDIYKEVQRLAFLAHQAIGCRGISR 245
            +       D  S E K+      ++ P        +  +  +    L    +   G +R
Sbjct: 742 PSITLKESGDILSLEEKFQGGTGVNLTPPPPLICSEEAVRSCRERIELVANTLQLEGFAR 801

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTP 270
            D   +  + +V  +E+N  PGMTP
Sbjct: 802 IDAFMNVDTGEVIVIEVNTVPGMTP 826



 Score = 43.6 bits (102), Expect = 0.034,   Method: Composition-based stats.
 Identities = 16/37 (43%), Positives = 18/37 (48%), Gaps = 1/37 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAG-FKVSQI 36
           + VL GG SSER+VSL SG      L       VS  
Sbjct: 418 VYVLFGGGSSERQVSLMSGTNVWLNLRGCKDLDVSPF 454


>gi|224437372|ref|ZP_03658344.1| D-alanyl-alanine synthetase A [Helicobacter cinaedi CCUG 18818]
 gi|313143837|ref|ZP_07806030.1| ligase [Helicobacter cinaedi CCUG 18818]
 gi|313128868|gb|EFR46485.1| ligase [Helicobacter cinaedi CCUG 18818]
          Length = 345

 Score =  195 bits (496), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 69/315 (21%), Positives = 129/315 (40%), Gaps = 45/315 (14%)

Query: 3   VLMGGISSEREVSLSSGKACASAL---------EDAGFKVSQIDVD-------------- 39
           V+ GG+S E E+S+ S  A    L          D+  +   I                 
Sbjct: 5   VIFGGVSFEHEISIVSAVALKKVLGERISNFIFLDSLHRFYLIPATLMKSKTFSSGEYKK 64

Query: 40  ------------RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87
                       +        + P+   +++HG  GEDG + A+L+   IP+    I +S
Sbjct: 65  CTEIFLQRSSFVKKSLFGFKAIIPNTLISLIHGADGEDGSMSALLDFYHIPFIGPRIESS 124

Query: 88  ALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147
            +S +K  +K    S GV V    ++ R + +    +  P ++KP + GSS+G+ V+ K+
Sbjct: 125 VMSFNKALTKIYAQSRGVKVLDHEILTRNSPNP--TLPYPLILKPSRLGSSIGVSVVNKE 182

Query: 148 QSIPLDLLQSSSWNHGDQLLIEQYVDGI---ELTCGVMGDASLDVTEIAVPKSDFYSYEL 204
             +     +  ++ + D +++E +  G+    L    +GD           K +   +E 
Sbjct: 183 DELEYA--KDLAFEYDDSIVVECFKSGVKEYNLAGCKIGDEFRFSIVEEPSKKEMLDFEN 240

Query: 205 KYSSLN-STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
           KY   + +  VL A I  ++ K++Q+     ++      + R DF    +  +V+  EIN
Sbjct: 241 KYLDFSRTAQVLKADISQELEKQIQQNFAKLYENAFEGALIRCDFFV--IDNEVYLNEIN 298

Query: 264 VQPGMTPVSIFPEMA 278
             PG     +F + A
Sbjct: 299 PIPGSMANYLFEDFA 313


>gi|126178605|ref|YP_001046570.1| D-alanine--D-alanine ligase [Methanoculleus marisnigri JR1]
 gi|125861399|gb|ABN56588.1| D-alanine--D-alanine ligase [Methanoculleus marisnigri JR1]
          Length = 663

 Score =  195 bits (496), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 71/298 (23%), Positives = 125/298 (41%), Gaps = 27/298 (9%)

Query: 24  SALEDA-GFKVSQIDVDRSVGLVLAHLK--PDLAFNVLHGNFGEDGL----VQAILELLE 76
           +AL +  G++ + +    ++   L  LK   D  FN+    F  D      V A+ E+  
Sbjct: 339 AALRELSGYRFTYLFKHETLIQDLQRLKGKVDYVFNLCDEGFNNDPRKELHVPALFEIYS 398

Query: 77  IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGG 136
           IPYT +G  A A   DK   + +    G+PV  +  +          +  P ++KP  G 
Sbjct: 399 IPYTGAGPQALAFCYDKSLVRGIAKEMGIPVPDACFITPGDRTYDVGMKFPAIVKPNAGD 458

Query: 137 SSLGI---IVIKKDQSIPLDLLQSSS--WNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           SS GI    +    + +  D++ S      +   LL+E+++ G +++ G++G+ S     
Sbjct: 459 SSYGITQESIAHSIEEL-SDIITSLRTTLGYDRSLLVEEFLTGKDISVGIIGNPSGYSMV 517

Query: 192 IAVPKSDF----------YSYELKYSSLN---STHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           + V + D+            YE K+   +        PA +P +  K + R      + +
Sbjct: 518 LPVIEEDYSALPPGLPRICGYEAKWLPDSPYWKITSKPADLPEETEKAIVRCCLALFERL 577

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            CR   R D+  D        LE+N  PG         MA YAG ++ E+L  +++ A
Sbjct: 578 ECRDYCRFDWRLDEHGN-PKLLEVNPNPGWCWDGHLARMAKYAGLTYPEMLGRILKAA 634


>gi|118474718|ref|YP_891983.1| D-alanyl-alanine synthetase A [Campylobacter fetus subsp. fetus
           82-40]
 gi|118413944|gb|ABK82364.1| D-alanine--D-alanine ligase [Campylobacter fetus subsp. fetus
           82-40]
          Length = 345

 Score =  195 bits (496), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 74/314 (23%), Positives = 127/314 (40%), Gaps = 51/314 (16%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------- 48
            ++ GG+S E E+S+ S  A   AL     ++S I VD+     L +             
Sbjct: 4   GIVFGGVSFEHEISIVSAIAVKKAL---KCELSFIFVDKFGDFYLINSDDMRANFFSSHK 60

Query: 49  ------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84
                                   L  D   N++HG  GEDG +  + E   + +    +
Sbjct: 61  YKNSKKLHLKKGGFAAHGIFGMNDLNVDCYINLIHGRDGEDGKIAGMFEFYNVTFIGPRL 120

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
            AS +S +K  +K +   C V   P  ++ R  +    L   P+++KP + GSS+G+ V+
Sbjct: 121 EASVMSFNKELTKLLAHKCAVKSLPYEMIKRGDIVKTEL---PFILKPARLGSSIGVSVV 177

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDVTEIAVP-KSDFYS 201
           +   ++  D     ++     +L+E + +GI      G   +     + I  P K+DF  
Sbjct: 178 RDISNL--DYALDVAFEFDKDILVEPFKEGIREFNLAGFKAENDFIYSFIEEPKKNDFLD 235

Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG-ISRSDFLFDPLSRKVFWL 260
           +E KY S +S+    A I   +  E++      +      G + R DF    L  +V+  
Sbjct: 236 FEQKYMSFSSSCAKEADIDDSLKIEIKDAFAKIYNGGNFDGALIRCDFFV--LDNEVYLN 293

Query: 261 EINVQPGMTPVSIF 274
           EIN  PG     +F
Sbjct: 294 EINPNPGSMANYLF 307


>gi|18398265|ref|NP_566334.1| D-alanine--D-alanine ligase family [Arabidopsis thaliana]
 gi|26451726|dbj|BAC42958.1| unknown protein [Arabidopsis thaliana]
 gi|28973361|gb|AAO64005.1| unknown protein [Arabidopsis thaliana]
 gi|332641164|gb|AEE74685.1| D-alanine--D-alanine ligase family protein [Arabidopsis thaliana]
          Length = 519

 Score =  195 bits (496), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 86/379 (22%), Positives = 143/379 (37%), Gaps = 80/379 (21%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKV--SQIDVD------------------- 39
           + ++ GG S+ER +SL+S ++    ++  G  V    ID D                   
Sbjct: 80  VGLICGGPSAERGISLNSARSVLDHIQGDGINVSCYYIDPDLKAFAISSAQVYSNTPSDF 139

Query: 40  -----------RSVGLVLAHL--KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
                       S+  +  HL    D+ F V+HG FGEDG +Q +LE   IP+  +G   
Sbjct: 140 DFKLESLAQGFSSLSELAEHLVSAVDIVFPVIHGRFGEDGGIQELLESHNIPFVGTGSRE 199

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVN-----------RFTMDSQHLISPPYVIKPLKG 135
              + DK  +   +   G    P+ LV             FT +   L     V+KP K 
Sbjct: 200 CFRAFDKYEASLELKELGFMTVPNYLVQGTGVDKSEIALWFTDNQLDLEMGKVVVKPAKA 259

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAV 194
           GSS+G+ V            +       D++++E ++ D  E T  V+   S  V    V
Sbjct: 260 GSSIGVKVAFGVNDSIKKATELILEGIDDRVVVEVFIEDAYEFTAIVLDVGSGSVCHPVV 319

Query: 195 ----------------PKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
                            ++  + Y  KY  +   T+  P + P+ + K ++  A L  Q 
Sbjct: 320 LMPTEVQLQFHGIGDPKENAIFDYRRKYLPTQQVTYHTPPRFPIHVIKSIREEASLIFQK 379

Query: 238 IGCRGISRSDFLFDPLS----------------RKVFWLEINVQPGMTPVSIFPEMAAYA 281
           +G R  +R D  +   +                  + + +IN+  GM   S   + A+  
Sbjct: 380 LGLRDFARIDGWYLAPNSNLSSPVSETLGGTKSGDIIFTDINLISGMEQTSFLFQQASKV 439

Query: 282 GYSFRELLLWMVEDASCLR 300
           G+S   +L  +V  A C R
Sbjct: 440 GFSHSNILRTIVHRA-CSR 457



 Score = 37.8 bits (87), Expect = 2.0,   Method: Composition-based stats.
 Identities = 11/26 (42%), Positives = 16/26 (61%)

Query: 3   VLMGGISSEREVSLSSGKACASALED 28
           V+ GG +SER+VS+ SG      L+ 
Sbjct: 489 VIFGGDTSERQVSVMSGTNVWVNLQR 514


>gi|282897350|ref|ZP_06305352.1| D-ala D-ala ligase [Raphidiopsis brookii D9]
 gi|281198002|gb|EFA72896.1| D-ala D-ala ligase [Raphidiopsis brookii D9]
          Length = 336

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 79/290 (27%), Positives = 136/290 (46%), Gaps = 16/290 (5%)

Query: 21  ACASALEDAGFKVSQIDVDRSVGLVLAH-LKPDLAFNVLHGNFGE--DGLVQAILELLEI 77
              + L D G +V +I     +   L +  + DL FN+  G  G   +  V A+ EL + 
Sbjct: 36  GLENTLNDLGHQVERIGNGGELTRKLVNGDRWDLVFNIAEGIKGRSREAQVPAVCELFDQ 95

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGS 137
            YT S  L  AL++DK  +K++V   G+P  P I++N     +   +  P   KPL  GS
Sbjct: 96  AYTFSDPLTCALTLDKALTKRIVRDRGLPTAPFIVINNIVEIANINLPLPLFCKPLSEGS 155

Query: 138 SLGI---IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS-------L 187
           S GI    ++K    +  ++ Q+        +L+E ++ G E+T G++G+ S       +
Sbjct: 156 SKGITGQSLVKDKAEL-FNICQTLYNQFQQPILVETFLPGREITVGIIGNGSQAKVVGIM 214

Query: 188 DVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           +V      ++D Y+   K   L+         P  +  + ++LA   +  +GCR  +R D
Sbjct: 215 EVIFTDKAETDSYTTLNKQEYLDRIAYQLITNPEPLAIQAEQLALEVYYLLGCRDAARLD 274

Query: 248 FLFDPLSRKVFWLEINVQPGMTPV-SIFPEMAAYAGYSFRELLLWMVEDA 296
              D  +  + +LEIN  PG+  + S  P M   AG S+ E++  +V+ A
Sbjct: 275 LRCDA-NGVLHFLEINPLPGLDYIYSDLPIMGRLAGISYTEMVNAIVDAA 323


>gi|20136383|gb|AAM11649.1|AF492457_1 D-alanine:D-alanine ligase [Azospirillum brasilense]
          Length = 209

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 81/211 (38%), Positives = 132/211 (62%), Gaps = 14/211 (6%)

Query: 97  KQVVSSCGVPVCPSILVNRFTMDS-QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
           K +++  GV     +++ +  +    H +  PY++KP+  GS++G+ ++++ Q+ P    
Sbjct: 1   KALLAPVGVRSPKGLVLTKGELTGGAHPMPAPYIVKPVDEGSTVGVTLVREGQNSP---- 56

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGD-----ASLDVTEIAVPKSDFYSYELKYSSLN 210
              +W  G++ L+E+++ G ELT GVMG        L VTEI   ++  Y Y  KYS+ +
Sbjct: 57  VGDAWTFGERALVEEFIPGRELTVGVMGGLDGECRPLTVTEIRF-EAQVYDYTAKYSAGH 115

Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL---SRKVFWLEINVQPG 267
           + H +PA+IP  + +E +RLA LAH+ +GCRG+SRSDF +D     +  +F+LEIN QPG
Sbjct: 116 AVHTVPAQIPEHVAEEAKRLAVLAHRTLGCRGVSRSDFRWDDRKSGTDGLFFLEINNQPG 175

Query: 268 MTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           MTP+S+ PE AA  G ++  L+ WMVE+A+C
Sbjct: 176 MTPLSLVPEQAASVGLTYGALVAWMVENAAC 206


>gi|302814744|ref|XP_002989055.1| hypothetical protein SELMODRAFT_184333 [Selaginella moellendorffii]
 gi|300143156|gb|EFJ09849.1| hypothetical protein SELMODRAFT_184333 [Selaginella moellendorffii]
          Length = 857

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 83/369 (22%), Positives = 148/369 (40%), Gaps = 70/369 (18%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSV------------------ 42
           +A++ GG S+ER +SL+S ++    L+    +V    +D+ +                  
Sbjct: 24  VALICGGPSAERGISLNSARSVLDHLQAEDVEVDCYYMDQQLRAYAISPSQMYCNTPSDF 83

Query: 43  --------------GLVLAHLK--PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
                            L  LK   D+ F V+HG FGEDG +Q +LE   IP+  +G  A
Sbjct: 84  DFKLHSLAQCFTSQADFLRRLKSSVDIVFPVIHGKFGEDGGLQELLESAGIPFVGTGSSA 143

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP-----------PYVIKPLKG 135
           +  + DK  + + +S  G    PS L++   +D   L+               V+KP K 
Sbjct: 144 ARCAFDKYEAAKELSRFGFVTIPSFLIDSPEIDKAALVEWFKANDLNPSSDRVVVKPAKS 203

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDA--------S 186
           GSS+G+ V      +  D          D++++E ++ G  E T  ++           +
Sbjct: 204 GSSIGVTVAHGLDEVIRDAETLLKEGIDDRIVVEVFLQGCTEFTVIILDTGSGEQVQPVA 263

Query: 187 LDVTEIAVPKSD-------FYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           L  TE+ +  +D        ++Y  KY  +   ++  P + P+   + ++  A      +
Sbjct: 264 LLPTEVELLHADGQSIGEKIFNYRRKYLPTRQVSYHTPPRFPVQTIQSIRSGASKLFTLL 323

Query: 239 GCRGISRSDFLFDPLSRK--------VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             R  +R D    P S          V + ++N+  GM   S   + AA  G S R++L 
Sbjct: 324 NLRDFARVDGWLLPPSSSFNKSNDFLVVFSDVNLVSGMEQTSFLFQQAAQVGLSHRDVLR 383

Query: 291 WMVEDASCL 299
            ++  A   
Sbjct: 384 LVLNRARTR 392



 Score =  116 bits (292), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 68/325 (20%), Positives = 118/325 (36%), Gaps = 71/325 (21%)

Query: 15  SLSSGKACASALEDAG----FKV-SQIDVDRSVGLVLAHLKPD--LAFNVLHGNFGEDGL 67
           SL       S L  +G    + V S +    S+   + H K +  + F  +HG+ GE+G+
Sbjct: 504 SLK--AQVMSELSSSGSKVDYNVGSGVPTKLSMSEWIQHAKDEDAIVFIAVHGDIGENGI 561

Query: 68  VQAILELLEIPYTHSGILASALSMDKM---RSKQVVSSCGVPVCPSI------LVNRFTM 118
           +Q +LE   IP+T SG+ AS + MDK     +   +SS GV     +      L++    
Sbjct: 562 LQEMLEAKGIPFTGSGVKASRICMDKAVTGHTISPLSSNGVYSAQRVVYKTAELLHDCGD 621

Query: 119 DSQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSI---PLDLLQSSSW-------- 160
           + Q  +S           +KP   G S G+  +   + +      L +            
Sbjct: 622 NRQLWLSLQDKLEDSSICVKPAADGCSTGVARLCCARDLTVYLTALKEKLPRLLPGSLGK 681

Query: 161 ---------NHGDQLLIEQYV-------------------DGIELTCGVMGDA----SLD 188
                       D L+ E ++                     +E+T GV+G      +L 
Sbjct: 682 PHGIIELPTTIPDSLIFEPFIQTDDILVCEESQIAWEGKHRWVEITAGVIGKKGAMHALH 741

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKI---PLDIYKEVQRLAFLAHQAIGCRGISR 245
            +       D  S E K+      ++ P        +  +  +    L    +   G +R
Sbjct: 742 PSITLKESGDILSLEEKFQGGTGVNLTPPPPLICSEEAVRSCRERIELVANTLQLEGFAR 801

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTP 270
            D   +  + +V  +E+N  PGMTP
Sbjct: 802 IDAFMNVDTGEVIVIEVNTVPGMTP 826



 Score = 43.6 bits (102), Expect = 0.034,   Method: Composition-based stats.
 Identities = 16/37 (43%), Positives = 18/37 (48%), Gaps = 1/37 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAG-FKVSQI 36
           + VL GG SSER+VSL SG      L       VS  
Sbjct: 418 VYVLFGGGSSERQVSLMSGTNVWLNLRGCKDLDVSPF 454


>gi|163783735|ref|ZP_02178721.1| hypothetical protein HG1285_01523 [Hydrogenivirga sp. 128-5-R1-1]
 gi|159880981|gb|EDP74499.1| hypothetical protein HG1285_01523 [Hydrogenivirga sp. 128-5-R1-1]
          Length = 328

 Score =  193 bits (491), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 74/300 (24%), Positives = 134/300 (44%), Gaps = 22/300 (7%)

Query: 11  EREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL----AHLKPD--LAFNVLHGNFGE 64
           ER+V     +  A  +   G +V   D +  +   L       K D  + FN+ +G  GE
Sbjct: 27  ERKV----VEKIAKVVSSRGHRVEVFDANLELCEKLLNFVEECKVDNVIVFNLSYGTQGE 82

Query: 65  DG--LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
                V A+LE+L I YT SG    A+++DK+ +K V    G+P    ++++ +    + 
Sbjct: 83  SRYSHVPAMLEMLGIMYTGSGPFGHAIALDKVSTKLVFKEYGIPTPEFVVISPYQKIPEG 142

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            +S P V+KP     SLG+ +++  + +  D L       G + L+E+++ G E    ++
Sbjct: 143 -LSFPLVVKPRMEAQSLGVNLVRNYRELE-DTLTHVWEEFGQEALVEEFIRGPEYEVSLI 200

Query: 183 GDA----SLDVTEIAVPKSD--FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           G+     +L +T I +       YS E K    +     PA I  ++ + +  L+  A  
Sbjct: 201 GNGKYIKALPITGIYLGDDPEAIYSREAK-LKYHPEQFCPAAIKGELARRLVELSIKAFN 259

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           A+  R  +R D        K ++ E+N    + P   F   A  AG S+ +L+  ++  +
Sbjct: 260 ALHLRDYARFDLRL-GEDGKPYFFEVNSMASLNPSGSFFCAAKAAGLSYDQLIFKILHSS 318


>gi|158522759|ref|YP_001530629.1| D-alanine--D-alanine ligase [Desulfococcus oleovorans Hxd3]
 gi|158511585|gb|ABW68552.1| D-alanine--D-alanine ligase [Desulfococcus oleovorans Hxd3]
          Length = 338

 Score =  193 bits (491), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 83/300 (27%), Positives = 142/300 (47%), Gaps = 25/300 (8%)

Query: 20  KACASALEDAGFKVSQIDVDRSVGLVLAHLK--PDLAFNVLHGNFGEDGLVQ--AILELL 75
            A  + L + GF V  I+ D    + L   +   DL FN   G +G+    Q  A+LE+L
Sbjct: 34  AAMTAHLRECGFDVIPIEADPDAYIKLYENRDSIDLVFNYSIGIYGQARYAQVPAMLEML 93

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKG 135
            +PYT SG L  AL +DK R +QV+S+C VPV  S +        Q  ++ P ++KP+  
Sbjct: 94  RLPYTGSGPLTQALILDKARMQQVLSACNVPVLCSQVFETGDEPLQSGLAFPLIVKPVAQ 153

Query: 136 GSSLGI---IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD--ASLDVT 190
           GSS GI    V++ + ++   + +  +   G+  L++ ++DG E +  +MG+      + 
Sbjct: 154 GSSAGITSDSVVRDEAALYRQVGRVMA-TFGEPALVQPFLDGREFSIPMMGNPPEIFPII 212

Query: 191 EI---AVPKS--DFYSYELKYSS----LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241
           E     +P+      S E+K+       +   + PA +   + + +++    A +A+G  
Sbjct: 213 EPDFSRLPEGYARIDSLEVKWIFEEQAESHHLICPAPVAPGLQERLEQTVRAAWKALGIC 272

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTP-----VSIFPEMAAYAGYSFRELLLWMVEDA 296
              R D   D      + +++N  PGM P      S FP  A  AG  ++ LL  ++E A
Sbjct: 273 DWCRIDLRCDMA-GTPYVIDVNSPPGMIPPEGSMTSYFPMSARAAGIDYQGLLKRLIETA 331


>gi|268323538|emb|CBH37126.1| conserved hypothetical protein [uncultured archaeon]
          Length = 720

 Score =  193 bits (491), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 71/298 (23%), Positives = 128/298 (42%), Gaps = 23/298 (7%)

Query: 17  SSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDL--------AFNVLHGNFGEDG-- 66
            + K  A +LE  G  V   + +  +   L    P +         FN+ +G  GE    
Sbjct: 29  KTVKLVAESLEKEGHNVRIAEGNMYIIEKLQEFMPRVIEGERMGMVFNMAYGIQGESRYT 88

Query: 67  LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP 126
            + A+LE+L IPY  SG    +L++DK+ +K ++    +      + +    D    +  
Sbjct: 89  HLPAMLEMLGIPYVGSGPEGHSLALDKVITKILMQKQSISTPNFWVYSSGDED-MSDVQY 147

Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA- 185
           P ++KP     S GI ++  +  +   +    +     Q L+EQ++ G E   G++G+  
Sbjct: 148 PVIVKPKMEAVSYGIKIVDNEDDLRAAVKFVVT-EFIQQALVEQFIRGREFCVGLLGNGD 206

Query: 186 --SLDVTEIAVPKSD--FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241
             +  V EI +        + + K        + PAKI   +  E+ RL+  A +A+  R
Sbjct: 207 PEAFPVLEIDLENDPDAIQTVDDKKQKPRGK-ICPAKISQKLAAEMVRLSKDAFRALELR 265

Query: 242 GISRSDFLFDPLSRKVFWLEINVQP--GMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
             +R D   D     ++ LEIN     G+T   ++   A  AGY +  L+  ++E A+
Sbjct: 266 DFARVDIRMDEAEN-IYLLEINSMASLGLTGSYVY--AANVAGYDYARLVNKILEVAA 320


>gi|149922083|ref|ZP_01910523.1| D-alanine--D-alanine ligase [Plesiocystis pacifica SIR-1]
 gi|149817020|gb|EDM76502.1| D-alanine--D-alanine ligase [Plesiocystis pacifica SIR-1]
          Length = 674

 Score =  193 bits (491), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 89/306 (29%), Positives = 143/306 (46%), Gaps = 14/306 (4%)

Query: 7   GISSEREV-SLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGED 65
           G  SE E  S  +  A A AL   G  V +++    +   L   K  LAFN+  G+ G  
Sbjct: 353 GDDSEAEFDSRETVDALADALGQLGLDVVELEATPDLVHTLPRAKLALAFNIAEGSRGRC 412

Query: 66  G--LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
              +V A+LELL +PYT S  +A AL++DK  +K  V++ G+      ++ R +      
Sbjct: 413 RELIVPALLELLGVPYTGSDAVAMALTLDKSLAKAAVAAAGLRTPSWAVLRRGSDPLPTG 472

Query: 124 ISPPYVIKPLKGGSSLGI--IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
           +  P  +KP+  GSS GI    +  D+        +    +   +L+E+Y+ G E T G+
Sbjct: 473 LRYPLFLKPIAEGSSKGIDDGAVVLDERSLRTRAWALLARYHQPVLVEEYLPGREFTVGI 532

Query: 182 ---MGDASLDVTEIAVPKSD---FYSYELKYSSL-NSTHVLPAKIPLDIYKEVQRLAFLA 234
              +  A L   EI    SD   FY +E K S+     +  PA++  D+   ++  A  A
Sbjct: 533 VEALHPAVLAPMEIIHDDSDSHAFYGFESKLSADAGVRYQAPAQVDADLDDALRSAAQAA 592

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP-VSIFPEMAAYAGYSFRELLLWMV 293
            +A+GCR ++R D   D    +  ++E N  PG++P  S    +AA  G  +  L+  +V
Sbjct: 593 FRALGCRDVARIDLRLDAA-GEAHFIECNPLPGLSPGWSDLCMIAAAEGIDYAGLVAGLV 651

Query: 294 EDASCL 299
             A   
Sbjct: 652 APALAR 657



 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 87/297 (29%), Positives = 137/297 (46%), Gaps = 19/297 (6%)

Query: 21  ACASALEDAGFKVSQIDVDRSVGLVLAHLK---PDLAFNVLHGNFG--EDGLVQAILELL 75
           A A+ L D G +V   D+   +G  +A L+   PDL  N   G  G   + L  A+ E L
Sbjct: 28  AIATMLRDLGHQVGLFDMSNELGQAVAELERYAPDLVLNTAEGQGGPLREALFPALFEEL 87

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---DSQHLISPPYVIKP 132
            + YT SG    AL++DK R+K+VV++ GVP   S L+  +T            P +IKP
Sbjct: 88  GLAYTGSGPTTCALTLDKHRTKEVVAALGVPTPRSFLIEDYTELADIPASSWPIPAIIKP 147

Query: 133 LKGGSSLGII---VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC------GVMG 183
              GSS G+    +    + +PL L+          +L+E +V G ++T       G + 
Sbjct: 148 NFEGSSKGVSGHSIAHDPREVPL-LVSRLLARFEAGVLVEAFVPGRDVTVPWLEVVGALP 206

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
            A     +  V     Y YELK          PAK+   + +++ R++     A+  R +
Sbjct: 207 AAEYSFGDAPVDAQQIYDYELKQDGGAVQVQTPAKLAPALARKLARMSERIVAALNVRDL 266

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           +R DF   P   + ++LEIN  P + P +   E AA AG S  +++L  V  ++  R
Sbjct: 267 ARLDFRITPS-GEPYFLEINALPSLEPGASIYESAALAGLSQPDMVLGSVIASAVRR 322


>gi|308193598|gb|ADO16330.1| vancomycin resistance protein A [Enterococcus faecalis]
          Length = 223

 Score =  193 bits (490), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 60/202 (29%), Positives = 102/202 (50%), Gaps = 9/202 (4%)

Query: 51  PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            D+AF+ LHG  GEDG +Q + EL  IP+    I +SA+ MDK  +  V  + G+     
Sbjct: 24  VDVAFSALHGKSGEDGSIQGLFELSGIPFVGCDIQSSAICMDKSLTYIVAKNAGIATPAF 83

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            ++N+         + P  +KP + GSS G+  +     +  D    S+  +  ++LIEQ
Sbjct: 84  WVINKDDRPVAATFTYPVFVKPARSGSSFGVKKVNSADEL--DYAIESARQYDSKILIEQ 141

Query: 171 YVDGIELTCGVMGD-ASLDVTEIAVPKSDFYSY------ELKYSSLNSTHVLPAKIPLDI 223
            V G E+ C V+G+ A+L V E+   +  +  +      E +  S N+   +PA +  + 
Sbjct: 142 AVSGCEVGCAVLGNSAALVVGEVDQIRLQYGIFRIHQEVEPEKGSENAVITVPADLSAEE 201

Query: 224 YKEVQRLAFLAHQAIGCRGISR 245
              +Q  A   ++A+GCRG++R
Sbjct: 202 RGRIQETAKKIYKALGCRGLAR 223


>gi|325921424|ref|ZP_08183280.1| ATP-grasp enzyme, D-alanine-D-alanine ligase [Xanthomonas gardneri
           ATCC 19865]
 gi|325548066|gb|EGD19064.1| ATP-grasp enzyme, D-alanine-D-alanine ligase [Xanthomonas gardneri
           ATCC 19865]
          Length = 199

 Score =  193 bits (490), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 59/201 (29%), Positives = 99/201 (49%), Gaps = 9/201 (4%)

Query: 100 VSSCGVPVCPSILVNRFTMDSQ-----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154
             S G+       +       Q       I  P ++KP   GSS+GI  +     +   +
Sbjct: 1   WLSLGLCTPRYARLAAGASADQIHAAAQQIGLPVIVKPANEGSSVGISRVFDQAQLEEAV 60

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHV 214
           + ++   +   LL+EQ ++G ELT  V+G+ +L    I VPK  +Y Y  KY + ++ ++
Sbjct: 61  VLAA--RYDGALLMEQLIEGDELTVAVLGEVALPSIRI-VPKGQWYDYNAKYVADDTQYL 117

Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274
            P  +  D   ++++LA  A +A G RG  R D + D  S +++ LE+N  PGMT  S+ 
Sbjct: 118 CP-GLEGDAETQIRQLALDAFRAAGARGWGRVDVMRDRASGQLYLLEVNTAPGMTSHSLV 176

Query: 275 PEMAAYAGYSFRELLLWMVED 295
           P+ A   G  F EL+  ++E 
Sbjct: 177 PKAARQLGIDFEELVWRVLEQ 197


>gi|223040206|ref|ZP_03610485.1| D-alanine--D-alanine ligase (D-alanylalanine
           synthetase)(D-Ala-D-Ala ligase) [Campylobacter rectus
           RM3267]
 gi|222878567|gb|EEF13669.1| D-alanine--D-alanine ligase (D-alanylalanine
           synthetase)(D-Ala-D-Ala ligase) [Campylobacter rectus
           RM3267]
          Length = 344

 Score =  193 bits (490), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 75/314 (23%), Positives = 130/314 (41%), Gaps = 51/314 (16%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL--------------- 46
           AV+ G  S E E+S+ S  A    L++   +   I  D+     L               
Sbjct: 4   AVIFGAKSYEHEISVVSAIALKKVLKN---EPLFIFCDKFREFYLINGADMKANFFSSGK 60

Query: 47  ----------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84
                                   ++ D   N++HG  GEDG + A+LE   + Y    +
Sbjct: 61  YKNAKKLTLKQGGFFAGGLLGEKKIEADAFINLVHGMDGEDGKIAALLEFYGLSYIGPRV 120

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
            ASALS +K  +K +    GV      +V+R    S   +  P ++KPL+ GSS+G+ VI
Sbjct: 121 EASALSYNKELTKLLAQKAGVNTLNYEVVSRAKAPS---LPLPVILKPLRLGSSIGVSVI 177

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDVTEIAVP-KSDFYS 201
           K    +   L    ++    ++L+E +++G++     G   D  +  + I  P K +F  
Sbjct: 178 KDASELEYGLDV--AYEFDKEILVEPFIEGVKEYNLAGCKADGEIKFSIIEEPKKKEFLD 235

Query: 202 YELKYSSLNST-HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260
           YE KY S ++      A I  ++  ++++     +       + R DF    ++ +V+  
Sbjct: 236 YEQKYMSFSNESRAREADIGAELAAKLKQSFERIYNCGFDGALIRCDFF--EVNGEVYLN 293

Query: 261 EINVQPGMTPVSIF 274
           EIN  PG     +F
Sbjct: 294 EINPNPGSMANYLF 307


>gi|313835191|gb|EFS72905.1| D-alanine--D-alanine ligase [Propionibacterium acnes HL037PA2]
 gi|314929163|gb|EFS92994.1| D-alanine--D-alanine ligase [Propionibacterium acnes HL044PA1]
 gi|314970887|gb|EFT14985.1| D-alanine--D-alanine ligase [Propionibacterium acnes HL037PA3]
 gi|328905772|gb|EGG25548.1| D-alanine--D-alanine ligase B [Propionibacterium sp. P08]
          Length = 255

 Score =  192 bits (489), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 68/253 (26%), Positives = 116/253 (45%), Gaps = 18/253 (7%)

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116
           +LHG  GE+G +  +L+L+ IPY  SG  A  +S DK  + +++++ GV     + +   
Sbjct: 1   MLHGGLGENGALLEVLQLMGIPYVGSGPAACRISYDKSIASRIMTAVGVATPQQVALPHD 60

Query: 117 TMDS----------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQL 166
                               P ++KP +GGSSLG+  +    ++P  +    ++ + D +
Sbjct: 61  IFRELGTRPVIHSITKKFGLPIIVKPARGGSSLGVTRVDDIDALPQAIAN--AYAYDDMV 118

Query: 167 LIEQYVDGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD 222
           +IE+++ G EL  G++    G   L   E+  P    Y Y   Y+   +    PA+I  +
Sbjct: 119 VIEEFIVGTELAIGMITTSEGTQVLPAVEVR-PVGGVYDYSAMYTGGETRLTAPAEITDE 177

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAG 282
           + +    +A +    +   GISR D + D   R VF LE    PGMT  S+ P     A 
Sbjct: 178 VAQAATEMARVVQGELDFFGISRVDAIVDGSGRPVF-LEAGAAPGMTATSLVPVAMKAAD 236

Query: 283 YSFRELLLWMVED 295
               E+   +V+D
Sbjct: 237 LDLGEVCSRLVDD 249


>gi|217076423|ref|YP_002334139.1| D-alanine-D-alanine ligase family protein [Thermosipho africanus
           TCF52B]
 gi|217036276|gb|ACJ74798.1| D-alanine-D-alanine ligase family protein [Thermosipho africanus
           TCF52B]
          Length = 312

 Score =  192 bits (489), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 67/292 (22%), Positives = 139/292 (47%), Gaps = 25/292 (8%)

Query: 20  KACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ----AILELL 75
           +A  +A+    +    +  D +    +     D  FN+ +    E   +Q    A+L+LL
Sbjct: 20  EAVKNAVSK-KYDCEVVQFDENFINKIK--GFDFVFNLSNKGGKE--TIQVHVPALLDLL 74

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKG 135
            IPYT S   + +L +DK+ +K ++    +P      V       + + +  +++KP + 
Sbjct: 75  NIPYTSSNAYSHSLCLDKITTKIIMQHYNIPTPRF-YVYDLGQTPEKIDNGTFIVKPPRE 133

Query: 136 GSSLGIIVIKKDQSIPL--DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDV 189
           GS+ GI       ++     +++          L+E+++DG EL+ G++G+      L +
Sbjct: 134 GSARGISKDSVVDNLKALQKMVKYIHEEFKQPALVEEFIDGKELSVGIIGNGDSLEVLPI 193

Query: 190 TEIA---VPKS--DFYSYELKYSSLN-STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
            EI    +P+    FYSY +K++    + ++ PA+I  ++ ++++  A    + +  R  
Sbjct: 194 LEIDFSTLPEGLERFYSYNVKHNYGEMTNYICPARISNNVKEKLEFYAKKLFRVLNLRDY 253

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTP-VSIFPEMAAYAGYSFRELLLWMVE 294
           +R D        ++++LE+N  P + P  S   +MA  AGY + +L+L ++E
Sbjct: 254 ARMDVRIR--DDEIYFLEVNSAPQLVPVYSDITKMAKAAGYEYDDLILKILE 303


>gi|239617317|ref|YP_002940639.1| D-alanine--D-alanine ligase [Kosmotoga olearia TBF 19.5.1]
 gi|239506148|gb|ACR79635.1| D-alanine--D-alanine ligase [Kosmotoga olearia TBF 19.5.1]
          Length = 321

 Score =  192 bits (489), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 69/296 (23%), Positives = 130/296 (43%), Gaps = 23/296 (7%)

Query: 20  KACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLV--QAILELLEI 77
           +A   AL         + +D      +     D AFN+  G       V   AIL+ L +
Sbjct: 20  EAVIRALSK-KHDSQPLPIDEKFMETVKE--YDFAFNLSTGGGKLSKQVHAPAILDRLGV 76

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGS 137
           P+T S  +  A+ +DK  +K ++   G+P    + ++    +   +   P  +KP   GS
Sbjct: 77  PFTGSSAIVHAICIDKSITKLILEKSGIPTPRFVKIDDPN-NIPEIDFYPAFVKPSCEGS 135

Query: 138 SLGI---IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVT 190
           +LGI    V+K  + +   +    +       ++E+++DG E T G++G+      L + 
Sbjct: 136 ALGISRDSVVKNQKELKKQVEMIMN-KFNQPAIVEEFIDGREFTVGIIGNGNDLKVLPIL 194

Query: 191 EIAVPK-----SDFYSYELKYSSL-NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244
           EI           FYS+ +K+     +T++ PA++     K+++  A  A +AIG    +
Sbjct: 195 EIDFSNLPEGLEHFYSHRVKHHYGEKTTYICPARLEESQRKKLENYAKRAFKAIGLFDFA 254

Query: 245 RSDFLFDPLSRKVFWLEINVQPGMTP-VSIFPEMAAYAGYSFRELLLWMVEDASCL 299
           R D        + + +E+N  P + P  S   +M A  G+ + +L+  ++E A   
Sbjct: 255 RIDVRMRV--NEFYIIEVNSLPLLVPVYSDLTKMLAPIGWKYEDLVNAILEAAIAR 308


>gi|167749950|ref|ZP_02422077.1| hypothetical protein EUBSIR_00918 [Eubacterium siraeum DSM 15702]
 gi|167657117|gb|EDS01247.1| hypothetical protein EUBSIR_00918 [Eubacterium siraeum DSM 15702]
          Length = 354

 Score =  192 bits (489), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 76/346 (21%), Positives = 138/346 (39%), Gaps = 57/346 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           +AVL GG S++   SL +  +  S+L     +   I + R+   +               
Sbjct: 6   IAVLFGGASADHAASLHTAYSVLSSLPKE-IEPLAIGITRAGRWLFYPGSYENIKDGSWE 64

Query: 47  ----------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIP 78
                                          + D  F VLHG +GEDG VQ + +L  +P
Sbjct: 65  QDSDCCSCVISPDMTNKGVIKIISDGESTIHRIDAVFPVLHGKYGEDGRVQGLCKLAGLP 124

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH--------LISPPYVI 130
              +   A+AL  D+     V+S   + V  ++ ++R  M+            +S P   
Sbjct: 125 VIGNDFAAAALCNDRRIMDLVLSDSNIKVIENVTLHRSEMNDMTAAIKKITGKLSFPIYT 184

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD-- 188
            P    +S+G    + ++ +   +   +S++H   ++ E  V G ELTC V+G    D  
Sbjct: 185 APTSCSTSVGACRAENEKELEEAIK--ASFSHHPYIIAESAVKGRELTCAVLGAKHHDER 242

Query: 189 -VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
                 V   D      +Y +  S   +PAK+      ++++ A  A+ A+ C+  +R D
Sbjct: 243 VAIGELVRTDDSIDKLSEYIASTSELKVPAKLDGLTQNKIKQTARAAYDALSCKCFARVD 302

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            + D    +V+   +   PG+   SIF  +   + YS+ E+L  ++
Sbjct: 303 MVLDN-DGEVYVRRVRGIPGLDRQSIFTRLVTESTYSYEEMLRMLI 347


>gi|167647366|ref|YP_001685029.1| D-alanine--D-alanine ligase [Caulobacter sp. K31]
 gi|167349796|gb|ABZ72531.1| D-alanine--D-alanine ligase [Caulobacter sp. K31]
          Length = 331

 Score =  192 bits (489), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 89/321 (27%), Positives = 136/321 (42%), Gaps = 42/321 (13%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVS----QIDVDRSVGLVLAHLKPDLAFNV- 57
           +L GG S ER VS++S KA A+AL DA         ++ V     L       ++     
Sbjct: 5   ILFGGTSRERLVSVASAKALATALPDADLWFWAPDDKVYVASDAVLQAHARPFEIDLPTE 64

Query: 58  ------------------------LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDK 93
                                   +HG   E+G + A+ E   + +T S   +S L+ DK
Sbjct: 65  GAAIGGIEAALDKAKAEERVLVLGMHGGAAENGDLAALCEARGVAFTGSDSRSSRLAFDK 124

Query: 94  MRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153
           + +K  V+  GV    ++ +               V KP+  GSS G+I +      P D
Sbjct: 125 IATKAAVAKAGVVAPSTVELADAEAALAKYGK--LVAKPVADGSSYGLIFVNG----PAD 178

Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSL 209
           L   ++    +  +IE +V G E TCGV+       +L   EI  P    + Y  KY S 
Sbjct: 179 LETLAAAAGREAYVIEPFVAGAEATCGVLEQDGKVFALPPVEIR-PADGAFDYVGKYLSK 237

Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
            +  + PA     +   +Q  A  AH+ +G  G SRSDF+  P      +LEIN  PGMT
Sbjct: 238 TTEEICPATFAPAVNAAMQEAALKAHKTVGAGGYSRSDFIVTP--NGPIFLEINTLPGMT 295

Query: 270 PVSIFPEMAAYAGYSFRELLL 290
             S++P+     G +F++ L 
Sbjct: 296 AASLYPKSLKAQGIAFKDFLD 316


>gi|332798138|ref|YP_004459637.1| D-alanine--D-alanine ligase [Tepidanaerobacter sp. Re1]
 gi|332695873|gb|AEE90330.1| D-alanine--D-alanine ligase [Tepidanaerobacter sp. Re1]
          Length = 336

 Score =  192 bits (489), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 79/299 (26%), Positives = 131/299 (43%), Gaps = 23/299 (7%)

Query: 17  SSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ--AILEL 74
            + K     L    F+ S +  D  +   L +    L FN+ +G  GE    Q  AILE 
Sbjct: 29  KTVKNLKEVLSK-RFECSLVKADSDIISKLQNENVSLVFNLCNGIRGETRQAQIPAILEF 87

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ---HLISPPYVIK 131
             IPYT S IL   L+++K  + +V    GV     I +       Q     I  P ++K
Sbjct: 88  SGIPYTGSSILGHTLAINKNYACKVFKGSGVTTPEFISIYDKDDLMQLRNKEIKFPVLVK 147

Query: 132 PLKGGSSLGI---IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA--- 185
           P   GS  GI    ++   +S+   + Q     +   +++ +Y+ G E T G++G+    
Sbjct: 148 PCDEGSGRGIHQDSLVYDFRSLKRKVQQELRL-YNPPIMVTEYIKGREFTVGILGNGNNL 206

Query: 186 -SLDVTEI---AVPKS--DFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAI 238
             L + EI   A+P     FYS+E+K +  + T    PA +   +  +++  A  A+ A+
Sbjct: 207 KVLPILEISFEALPDDLAKFYSFEVKANYADKTIFRCPAPLDNKLKTKIENTAKKAYNAL 266

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTP-VSIFPEMAAYAGYSFRELLLWMVEDA 296
             R  +R D          + LE+N  PG+    S   +MA+     +  L+L +VE+A
Sbjct: 267 SLRDYARVDVRV--KDDTPYVLEVNSLPGLQKGYSDITKMASACNLGYEGLILKIVENA 323


>gi|27383340|ref|NP_774869.1| hypothetical protein bll8229 [Bradyrhizobium japonicum USDA 110]
 gi|27356515|dbj|BAC53494.1| bll8229 [Bradyrhizobium japonicum USDA 110]
          Length = 348

 Score =  192 bits (488), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 69/300 (23%), Positives = 135/300 (45%), Gaps = 20/300 (6%)

Query: 17  SSGKACASALEDAGFKVSQIDVDRSVGLVLAH-LKPD-------LAFNVLHGNFGEDG-- 66
            + ++  +AL++        + D+ +   L   + PD       + FN+ +G  GE    
Sbjct: 29  KTVESVVAALQEGNHDTLLCEGDKGLLATLERFMPPDSQARPSGIVFNMAYGIQGECRYT 88

Query: 67  LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP 126
            V A+LE+  +PYT S  L  AL++DK  +KQ++  CGVP     ++ R T +S   +  
Sbjct: 89  HVPAMLEMAGVPYTGSSPLGHALALDKAITKQLIRDCGVPTPNFRVMRRGT-ESTGDLCF 147

Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186
           P V+KP    +S G+ ++ +   +   +    +  +    L+E+Y++G E+   ++G+  
Sbjct: 148 PLVVKPRHESTSFGLQLVYEPAQLRQAVEVIVT-QYAQDALVEEYIEGREICVALLGNGE 206

Query: 187 LDVTEIAVPKSD-----FYSYELKYSSLNS--THVLPAKIPLDIYKEVQRLAFLAHQAIG 239
           L+   +             ++E K          + PA++  ++   ++ ++    +A  
Sbjct: 207 LEALPLVEQDFGERETRLITWEDKMHMAVVEPQKICPAQVGSNLATILRDISVATFRACR 266

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
           CR  +R D   D  S   F LEIN    +   + +   A  AGY+F  L+  +++ A   
Sbjct: 267 CRDYARVDIRID-RSGHPFVLEINSMAALGIGASYVLAAKAAGYTFSSLVNGILDVAHAR 325


>gi|26452707|dbj|BAC43436.1| unknown protein [Arabidopsis thaliana]
          Length = 844

 Score =  192 bits (488), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 89/380 (23%), Positives = 146/380 (38%), Gaps = 83/380 (21%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKV--SQIDVD------------------- 39
           + ++ GG S+ER +SL+S ++    ++  G  V    ID D                   
Sbjct: 80  VGLICGGPSAERGISLNSARSVLDHIQGDGINVSCYYIDPDLKAFAISSAQVYSNTPSDF 139

Query: 40  -----------RSVGLVLAHL--KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
                       S+  +  HL    D+ F V+HG FGEDG +Q +LE   IP+  +G   
Sbjct: 140 DFKLESLAQGFSSLSELAEHLVSAVDIVFPVIHGRFGEDGGIQELLESHNIPFVGTGSRE 199

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVN-----------RFTMDSQHLISPPYVIKPLKG 135
              + DK  +   +   G    P+ LV             FT +   L     V+KP K 
Sbjct: 200 CFRAFDKYEASLELKELGFMTVPNYLVQGTGVDKSEIALWFTDNQLDLEMGKVVVKPAKA 259

Query: 136 GSSLGIIVIK-KDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIA 193
           GSS+G+ V    + SI    L        D++++E ++ D  E T  V+   S  V    
Sbjct: 260 GSSIGVKVAFGVNDSIKKATLILE--GIDDRVVVEVFIEDAYEFTAIVLDVGSGSVCHPV 317

Query: 194 V----------------PKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           V                 ++  + Y  KY  +   T+  P + P+ + K ++  A L  Q
Sbjct: 318 VLMPTEVQLQFHGIGDPKENAIFDYRRKYLPTQQVTYHTPPRFPIHVIKSIREEASLIFQ 377

Query: 237 AIGCRGISRSDFLFDPLS----------------RKVFWLEINVQPGMTPVSIFPEMAAY 280
            +G R  +R D  +   +                  + + +IN+  GM   S   + A+ 
Sbjct: 378 KLGLRDFARIDGWYLAPNSNLSSPVSETLGGTKSGDIIFTDINLISGMKQTSFLFQQASK 437

Query: 281 AGYSFRELLLWMVEDASCLR 300
            G+S   +L  +V  A C R
Sbjct: 438 VGFSHSNILRTIVHRA-CSR 456



 Score = 77.5 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 32/112 (28%), Positives = 48/112 (42%), Gaps = 14/112 (12%)

Query: 54  AFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS---CGVPV--- 107
            F  +HG  GEDG +Q +LE   + YT  G+LAS   MDK+ + Q +S+    G+     
Sbjct: 625 VFIAVHGGIGEDGTLQGLLEDEGVSYTGPGVLASRTCMDKVMTSQALSNLSEFGIHTISK 684

Query: 108 ----CPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIP 151
                  I+   F      LI         +KP K G S G+  +   + + 
Sbjct: 685 DVKRTEDIMHETFPNVWDELIKKLQCLTLCVKPAKDGCSTGVARLCSSEDLA 736



 Score = 37.8 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 11/26 (42%), Positives = 16/26 (61%)

Query: 3   VLMGGISSEREVSLSSGKACASALED 28
           V+ GG +SER+VS+ SG      L+ 
Sbjct: 488 VIFGGDTSERQVSVMSGTNVWVNLQR 513


>gi|152990841|ref|YP_001356563.1| D-alanyl-alanine synthetase A [Nitratiruptor sp. SB155-2]
 gi|189083044|sp|A6Q3Z7|DDL_NITSB RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|151422702|dbj|BAF70206.1| D-alanine-D-alanine ligase [Nitratiruptor sp. SB155-2]
          Length = 342

 Score =  192 bits (488), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 76/309 (24%), Positives = 119/309 (38%), Gaps = 41/309 (13%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGF-------KVSQID-------------VDRS 41
           AV+ GG S E E+S+ S  A    +  A F           I+               +S
Sbjct: 4   AVVFGGKSYEHEISIVSTIAIKDIIPGAIFIFLDGNRDFYLIEKADLKSNYFSSGNYKKS 63

Query: 42  VGLVLAHLKP-------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
             L L                  D+  N++HG  GEDG + ++LE  EI Y    I  S 
Sbjct: 64  PKLELKKGGFYQKSLLKEKKIPADVVINLVHGADGEDGKLASLLEFFEIDYIGPRIEGSV 123

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQ 148
           +S  K+ +K     CG+ V P  L+ +           P +IKP   GSS+G+ V+    
Sbjct: 124 ISYSKLLTKLYAKECGIEVLPYQLLRKQDKKIID-FEYPVIIKPNHLGSSIGVSVVYDSS 182

Query: 149 SIPLDLLQSSSWNHGDQLLIEQYVDGI-ELTCGVMGDASLDVTEIA-VPKSDFYSYELKY 206
            +   L    ++   D++LIE +++GI E         +   ++I  V K     +E KY
Sbjct: 183 ELEYALDV--AFEFDDEVLIEPFIEGIEEYNLAGAKGQTFHFSKIEAVKKEKLLDFEKKY 240

Query: 207 -SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                S  V  A +   +   ++      +  +    I R DF       K++  EIN  
Sbjct: 241 LDFGRSGEVKDASLNETLRLHIRNAFEKIYDPLFSGAIIRIDFFVR--DGKLYLNEINPV 298

Query: 266 PGMTPVSIF 274
           PG     +F
Sbjct: 299 PGSLANYLF 307


>gi|115378993|ref|ZP_01466124.1| D-alanine--D-alanine ligase [Stigmatella aurantiaca DW4/3-1]
 gi|115363997|gb|EAU63101.1| D-alanine--D-alanine ligase [Stigmatella aurantiaca DW4/3-1]
          Length = 593

 Score =  192 bits (488), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 73/303 (24%), Positives = 131/303 (43%), Gaps = 24/303 (7%)

Query: 17  SSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---PDLAFNVLHGNFGE--DGLVQAI 71
            +  A A A+E  G ++ + +V       +A L+   PDL FN   G  G   +    A+
Sbjct: 24  ETVNALAGAIERLGHRLERFEVSGPASRTVARLEAYSPDLIFNTAEGRRGRFREAFYPAL 83

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIK 131
            + L  PYT S   A A+++DK  +K +++  G+       V + +  +   +  P ++K
Sbjct: 84  FDELGFPYTGSDAYALAVTLDKQLTKLILAKHGIRTPGWQYVEKLSELTAENLRFPVIVK 143

Query: 132 PLKGGSSLGI---IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG----- 183
           P   GSS GI    + +    +   + Q+ +  +   +L+E+Y+ G +LT   +      
Sbjct: 144 PNFEGSSKGITQDSIAETLDEVRAKVTQALA-KYPAGVLVEEYIGGKDLTVPFLAAVDND 202

Query: 184 -DASLDVTEIAVP-------KSDFYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLA 234
            D  L   E  +        K   Y YELK    ++  V  PA I     ++V+++A   
Sbjct: 203 YDGVLSPVEYVIDPAATVGRKYPIYDYELKTKHHSAVRVRAPANISAKTAEDVRKMAQTI 262

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            Q + CR + R DF         ++LEIN  P + P +     A   G     ++  +++
Sbjct: 263 FQVLDCRDLGRIDFRLSDA-GVPYFLEINALPSLEPGAGIYASAELDGLHLDGVINSIIQ 321

Query: 295 DAS 297
            A+
Sbjct: 322 SAA 324



 Score =  145 bits (367), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 57/227 (25%), Positives = 109/227 (48%), Gaps = 15/227 (6%)

Query: 10  SEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDG--L 67
           +E + S ++ +A   A+   G +V  ++ ++ +  VLA    D+ FN+  G  G +    
Sbjct: 369 AEYD-SPATLQAIREAIASWGHEVVDLEANQELPSVLASTPLDVVFNIAEGFKGRNRESQ 427

Query: 68  VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPP 127
           V A+LELL+IPYT S     ++++DK  +K++V   G+      L+           + P
Sbjct: 428 VPAMLELLDIPYTGSDPATLSIALDKALAKKIVRQAGIHTPNFQLMLTGKERLNKDFTFP 487

Query: 128 YVIKPLKGGSSLGI---IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
            ++KP+  GSS G+    V   +  +  ++++  +  +    L+E+Y+ G E T G++G+
Sbjct: 488 LMVKPVAEGSSKGVVSKSVCHSEAELR-EVVKEIASKYKQPALVEEYIGGREFTVGLLGE 546

Query: 185 ---ASLDVTEIA----VPKSDFYSYELKYSSLNS-THVLPAKIPLDI 223
                L   EI       K+  YS++ K    +   +  PAK+   +
Sbjct: 547 RRPRVLPPMEIVFLDKEEKNPVYSFQHKLDWTDRIRYDAPAKLEPAL 593


>gi|283781146|ref|YP_003371901.1| D-alanine--D-alanine ligase [Pirellula staleyi DSM 6068]
 gi|283439599|gb|ADB18041.1| D-alanine--D-alanine ligase [Pirellula staleyi DSM 6068]
          Length = 342

 Score =  191 bits (487), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 78/291 (26%), Positives = 135/291 (46%), Gaps = 21/291 (7%)

Query: 24  SALEDAGFKVSQIDVDRSVGLVL-AHLKPDLAFNVLHG--NFGEDGLVQAILELLEIPYT 80
            AL + G    +I   R++   L A    DL  N+  G    G +  V AIL++  IPYT
Sbjct: 37  QALAELGHTSDRIGSARALMARLTAGDDWDLVLNIAEGIEGMGREAQVPAILDVYGIPYT 96

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLG 140
            S  L  +L++ K  +KQV+++ G+P  P  ++++        +  P   KP+  G+S G
Sbjct: 97  FSDPLVMSLTLHKGLTKQVLAAAGLPTAPFAVISKLEDLEGLTLPYPLFAKPIAEGTSKG 156

Query: 141 I---IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD-------ASLDVT 190
           +     +   +++   + +     H   +L+E Y+DG E T G++G+        SL++ 
Sbjct: 157 VTSLSKVTSPEALR-AICEHLLREHQQSVLVETYLDGREFTTGLLGEGVSTRVLGSLEIK 215

Query: 191 EIAVPKSDFYSYELKYSSLNSTH---VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
             +      Y+Y  K +         + PA  P  + KEV+ L+    + +GCR   R D
Sbjct: 216 LRSDSDQVGYTYRNKENCEELIIYDLIRPADDP--LVKEVEALSLATWKTLGCRDAGRVD 273

Query: 248 FLFDPLSRKVFWLEINVQPGMTP-VSIFPEMAAYAGYSFRELLLWMVEDAS 297
              D L  K + LE+N   G+ P  S  P +A   G ++ EL+  ++  A+
Sbjct: 274 IRCDSL-GKPYLLEVNPLAGLHPEHSDLPMLATKIGMTYTELIGAIIACAT 323


>gi|315636188|ref|ZP_07891442.1| D-alanine-D-alanine ligase [Arcobacter butzleri JV22]
 gi|315479549|gb|EFU70228.1| D-alanine-D-alanine ligase [Arcobacter butzleri JV22]
          Length = 347

 Score =  191 bits (487), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 64/315 (20%), Positives = 126/315 (40%), Gaps = 47/315 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           +A++ GGIS E E+S+ S  A    L+        +D  R +  +               
Sbjct: 3   VAIVFGGISFEHEISIVSSIALKDVLKKDEIIYLFLDSSRQMYHIPTNIIKSKLFSSGEY 62

Query: 46  ----------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                   ++  D+  N+ HG  GEDG++ ++L+   IP+    
Sbjct: 63  KKFDKVYFQKGGFYKKGGVFSKDKNIDFDVVLNLSHGGDGEDGILSSVLDFYSIPFIAPR 122

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIV 143
             A  +S +K  +K    S  V         +   D   + S P ++KP+K GSS+G+ +
Sbjct: 123 TEACVVSSNKFLTKGYAKSVNVNTLDYKYFTKD--DKIEVDSFPVILKPVKLGSSIGVAI 180

Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDVTEIAVP-KSDFY 200
           +K  + +   L    ++   D ++IE ++ G++     G   +     + I  P K++F 
Sbjct: 181 VKSQEELQYALDV--AFEFDDAIIIEPFISGVKEYNLAGTKVNGEFKFSIIEEPQKAEFL 238

Query: 201 SYELKYSSLN-STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
            ++ KY   + ++      +   +  E++      +  +    I R DF    ++ +++ 
Sbjct: 239 DFDKKYLDFSRTSKAKEVDLGEKLNNEIKESFKRLYNTLFEGSIIRCDFFV--INDEIYL 296

Query: 260 LEINVQPGMTPVSIF 274
            EIN  PG     +F
Sbjct: 297 NEINSIPGSMANYLF 311


>gi|21536607|gb|AAM60939.1| unknown [Arabidopsis thaliana]
          Length = 516

 Score =  191 bits (487), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 86/379 (22%), Positives = 143/379 (37%), Gaps = 80/379 (21%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKV--SQIDVD------------------- 39
           + ++ GG S+ER +SL+S ++    ++  G  V    ID D                   
Sbjct: 77  VGLICGGPSAERGISLNSARSVLDHIQCDGINVSCYYIDPDLKAFAISSAQVYSNTPSDF 136

Query: 40  -----------RSVGLVLAHL--KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
                       S+  +  HL    D+ F V+HG FGEDG +Q +LE   IP+  +G   
Sbjct: 137 DFKLESLAQGFSSLSELAEHLVSAVDIVFXVIHGRFGEDGGIQELLESHNIPFVGTGSRE 196

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVN-----------RFTMDSQHLISPPYVIKPLKG 135
              + DK  +   +   G    P+ LV             FT +   L     V+KP K 
Sbjct: 197 CFRAFDKYEASLELKELGFMTVPNYLVQGTGVDKSEIALWFTDNQLDLEMGKVVVKPAKA 256

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAV 194
           GSS+G+ V            +       D++++E ++ D  E T  V+   S  V    V
Sbjct: 257 GSSIGVKVAFGVNDSIKKATELILEGIDDRVVVEVFIEDAYEFTAIVLDVGSGSVCHPVV 316

Query: 195 ----------------PKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
                            ++  + Y  KY  +   T+  P + P+ + K ++  A L  Q 
Sbjct: 317 LMPTEVQLQFHGIGDPKENAIFDYRRKYLPTQQVTYHTPPRFPIHVIKSIREEASLIFQK 376

Query: 238 IGCRGISRSDFLFDPLS----------------RKVFWLEINVQPGMTPVSIFPEMAAYA 281
           +G R  +R D  +   +                  + + +IN+  GM   S   + A+  
Sbjct: 377 LGLRDFARIDGWYLAPNSNLSSPVSETLGGTKSGDIIFTDINLISGMEQTSFLFQQASKV 436

Query: 282 GYSFRELLLWMVEDASCLR 300
           G+S   +L  +V  A C R
Sbjct: 437 GFSHSNILRTIVHRA-CSR 454



 Score = 37.8 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 11/26 (42%), Positives = 16/26 (61%)

Query: 3   VLMGGISSEREVSLSSGKACASALED 28
           V+ GG +SER+VS+ SG      L+ 
Sbjct: 486 VIFGGDTSERQVSVMSGTNVWVNLQR 511


>gi|229826927|ref|ZP_04452996.1| hypothetical protein GCWU000182_02311 [Abiotrophia defectiva ATCC
           49176]
 gi|229788545|gb|EEP24659.1| hypothetical protein GCWU000182_02311 [Abiotrophia defectiva ATCC
           49176]
          Length = 174

 Score =  191 bits (487), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 51/171 (29%), Positives = 92/171 (53%), Gaps = 4/171 (2%)

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           +  P ++KP  G SS+G+ +    Q     L++  ++++ +Q+++EQ++ G E +  V+ 
Sbjct: 1   MDFPVIVKPCCGDSSVGVCIAHNQQEYKAALME--AFSYENQVVVEQFITGREFSVAVVD 58

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
             +  V EIA P   FY Y+ KYS+ +     PA +   + KE+Q  A   ++A+  +  
Sbjct: 59  GKAYPVVEIA-PLEGFYDYKNKYSAGSCVETCPADLSASLTKEMQMYAEKGYEALNLQAY 117

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           +R DFL       ++ LE N  PGMTP S+ P+ A   G ++ +L   ++E
Sbjct: 118 ARLDFLM-EEDGSMYCLEANTLPGMTPTSLIPQEARVIGMNYPQLCEKLIE 167


>gi|325919672|ref|ZP_08181675.1| ATP-grasp enzyme, D-alanine-D-alanine ligase [Xanthomonas gardneri
           ATCC 19865]
 gi|325549835|gb|EGD20686.1| ATP-grasp enzyme, D-alanine-D-alanine ligase [Xanthomonas gardneri
           ATCC 19865]
          Length = 198

 Score =  191 bits (486), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 59/199 (29%), Positives = 99/199 (49%), Gaps = 9/199 (4%)

Query: 102 SCGVPVCPSILVNRFTMDSQ-----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
           S G+       +       Q       I  P ++KP   GSS+GI  +     +   ++ 
Sbjct: 2   SLGLCTPRYARLAAGASADQIHAAAQQIGLPVIVKPANEGSSVGISRVFDQAQLEEAVVL 61

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216
           ++   +   LL+EQ ++G ELT  V+G+ +L    I VPK  +Y Y  KY + ++ ++ P
Sbjct: 62  AA--RYDGALLMEQLIEGDELTVAVLGEVALPSIRI-VPKGQWYDYNAKYVADDTQYLCP 118

Query: 217 AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPE 276
             +  D   ++++LA  A +A G RG  R D + D  S +++ LE+N  PGMT  S+ P+
Sbjct: 119 -GLEGDAETQIRQLALDAFRAAGARGWGRVDVMRDRASGQLYLLEVNTAPGMTSHSLVPK 177

Query: 277 MAAYAGYSFRELLLWMVED 295
            A   G  F EL+  ++E 
Sbjct: 178 AARQLGIDFEELVWRVLEQ 196


>gi|255943331|ref|XP_002562434.1| Pc18g06070 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211587167|emb|CAP94831.1| Pc18g06070 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 366

 Score =  191 bits (486), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 79/330 (23%), Positives = 135/330 (40%), Gaps = 43/330 (13%)

Query: 7   GISSE------REVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---PDLAFNV 57
           G S E       +  +   +A  S L+  G +V+ +    S+   LA  K    DLAFN+
Sbjct: 26  GYSEEDCAALTHDGEI---QAVLSTLKKLGHQVTLVPGIESLVQQLAAGKHKCWDLAFNM 82

Query: 58  LHGNFG--EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR 115
             G  G   +  V A+L   ++P+T +     AL  +K  +K V++   +P  P +++  
Sbjct: 83  AQGFHGPARESQVPALLGAYQVPHTFADAATMALCQNKANTKMVLNHHNIPTAPFVVIPA 142

Query: 116 FTMDSQHL------ISPPYVIKPLKGGSSLGI---IVIKKDQSIPLDLLQSSSWNHGDQL 166
                  +      +  P  +KP+  GSS GI     +K    +   + Q  S    + +
Sbjct: 143 SEPADSLIKFTTSGLQYPLFVKPVTEGSSKGIDGFNKVKNPAELEPAVHQLRSKFPAEDI 202

Query: 167 LIEQYVDGIELTCGVMG-DASLDVTEIAV-----PKSDFYS---------YELKYSSLNS 211
           L+E ++ G E T G++G      V  +       P +DF +         +  ++S  + 
Sbjct: 203 LVEPFLSGREFTVGILGAGEDSRVIGVREFIWKKPSADFTNGVDGHPDLEFASRWSKSSR 262

Query: 212 THVLPA--KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF--DPLSRKVFWLEINVQPG 267
             ++P    +     +   R++  A +  GCR   R D  F  D        LE+N   G
Sbjct: 263 NKLIPRDQDLTHPQVQAACRVSLDAWKVFGCRDAGRVDIRFDSDEPDAVPNILEVNPISG 322

Query: 268 MTP-VSIFPEMAAYAGYSFRELLLWMVEDA 296
           + P  S  P  A   G S+ ELL  ++E A
Sbjct: 323 LLPDHSPLPACAESNGISYAELLGAIIESA 352


>gi|157736996|ref|YP_001489679.1| D-alanyl-alanine synthetase A [Arcobacter butzleri RM4018]
 gi|157698850|gb|ABV67010.1| D-alanine--D-alanine ligase [Arcobacter butzleri RM4018]
          Length = 347

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 64/315 (20%), Positives = 126/315 (40%), Gaps = 47/315 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           +A++ GGIS E E+S+ S  A    L+        +D  R +  +               
Sbjct: 3   VAIVFGGISFEHEISIVSSIALKDVLKKDEIIYLFLDSSRQMYHIPTNIIKSKLFSSGEY 62

Query: 46  ----------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                   ++  D+  N+ HG  GEDG++ ++L+   IP+    
Sbjct: 63  KKFDKVYFQKGGFYKKGGVFSKDKNIDFDVVLNLSHGGDGEDGILSSVLDFYSIPFIAPR 122

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIV 143
             A  +S +K  +K    S  V         +   D   + S P ++KP+K GSS+G+ +
Sbjct: 123 TEACVVSSNKFLTKGYAKSVNVNTLDYKYFTKD--DKIEVDSFPIILKPVKLGSSIGVAI 180

Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDVTEIAVP-KSDFY 200
           +K  + +   L    ++   D ++IE ++ G++     G   +     + I  P K++F 
Sbjct: 181 VKSQEELQYALDV--AFEFDDAIIIEPFISGVKEYNLAGTKVNGEFKFSIIEEPQKAEFL 238

Query: 201 SYELKYSSLN-STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
            ++ KY   + ++      +   +  E++      +  +    I R DF    ++ +++ 
Sbjct: 239 DFDKKYLDFSRTSKAKEVDLGEKLNNEIKESFKRLYNTLFEGSIIRCDFFV--INDEIYL 296

Query: 260 LEINVQPGMTPVSIF 274
            EIN  PG     +F
Sbjct: 297 NEINSIPGSMANYLF 311


>gi|283468531|emb|CAP18811.1| putative D-ala D-ala ligase [Opitutus terrae PB90-1]
          Length = 241

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 66/233 (28%), Positives = 109/233 (46%), Gaps = 10/233 (4%)

Query: 68  VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI--- 124
           +Q +L+   + Y     ++SAL+MDK  +K+  ++ G+ V P +            +   
Sbjct: 2   MQRLLDAAGMHYAGCDAVSSALTMDKTLTKETAAAKGIKVIPGVTFPAAKKPRPEQVIEQ 61

Query: 125 -SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
                V+KP   GSS+G+ ++   + +   L          + +IE+ + G EL  GV+ 
Sbjct: 62  FGERVVVKPNAEGSSVGLNLVGSREELTRVLDVI----QNGRWIIERRIFGRELAVGVLN 117

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
             ++ V EI  PKS  Y Y  KY+   + ++ PA +   + +++Q  A  A  A GCR  
Sbjct: 118 GRAMGVVEIR-PKSGVYDYASKYTKGMTNYLAPAPLDAALTQKIQAAAQTAFAACGCRDY 176

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +R DF+      +++ LEIN  PGM   S  P  A   G  F  L+  MV  A
Sbjct: 177 ARVDFIL-GDDHELYLLEINTHPGMKETSQLPMSARCEGIDFTALVKAMVTLA 228


>gi|332703219|ref|ZP_08423307.1| D-alanine--D-alanine ligase [Desulfovibrio africanus str. Walvis
           Bay]
 gi|332553368|gb|EGJ50412.1| D-alanine--D-alanine ligase [Desulfovibrio africanus str. Walvis
           Bay]
          Length = 339

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 73/290 (25%), Positives = 117/290 (40%), Gaps = 16/290 (5%)

Query: 20  KACASALEDAGFKVSQIDVDRSVGLVLAH-LKPDLAFNVLHG--NFGEDGLVQAILELLE 76
                AL   GF   +I    ++   L    + DL FN+  G   FG +  +  +L+   
Sbjct: 33  AGIEGALRALGFDTERIGSLPALMSALGQGRRWDLVFNIAEGLNGFGRESQIPCVLDWHG 92

Query: 77  IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGG 136
           IPYT S  +  AL + K  +K VV + G+P     +V      ++  +  P  +KP+  G
Sbjct: 93  IPYTFSEPMTLALGLHKGMTKHVVRAAGIPTPDFAVVAEPAEAAKVDLPFPLFVKPVAEG 152

Query: 137 SSLGIIVIK--KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD-------ASL 187
           + LGI       D++  +D            +L+E ++ G ELT GV+G         +L
Sbjct: 153 TGLGIGSASRVTDKAGLMDACARLIERFRQPVLVETFLPGRELTVGVVGTGAKARSVGAL 212

Query: 188 DVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           +V          Y Y  K       H   A        E  ++A  A +A+GCR   R D
Sbjct: 213 EVIFGDQADPSAYGYINKQDWERRMHYRIADDAEARTAE--QVALDAWRALGCRDGGRVD 270

Query: 248 FLFDPLSRKVFWLEINVQPGMTPV-SIFPEMAAYAGYSFRELLLWMVEDA 296
              D       ++E+N   G+ P  S  P +       ++EL+  +V  A
Sbjct: 271 LRLDGA-GVPNFIEVNPLAGLNPTYSDLPILCRLNNMPYQELIAAIVHSA 319


>gi|307322893|ref|ZP_07602187.1| D-alanine--D-alanine ligase [Sinorhizobium meliloti AK83]
 gi|306891461|gb|EFN22353.1| D-alanine--D-alanine ligase [Sinorhizobium meliloti AK83]
          Length = 321

 Score =  190 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 84/309 (27%), Positives = 140/309 (45%), Gaps = 21/309 (6%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + +L GG S+ER  SL +  A    L+     V  +D D    L+ A  + D   NV++G
Sbjct: 19  LVLLAGGSSTERGGSLETKNALLPYLQKLCRSVEVVDPDEVDHLLSAVRQCDFVLNVVYG 78

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV----NRF 116
             GEDG +Q  L+ L +PY+   +LASA+ M+K     ++ + G PV    L     +  
Sbjct: 79  AGGEDGRIQGFLDTLRVPYSGPSVLASAIGMNKEVFVALLRAWGYPVPYGRLATTLEDPR 138

Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
           T   +   S   V+KP+  GSSLGI ++    +    + Q    +   +  +E++++G  
Sbjct: 139 TWPRELQQSKVLVLKPIDEGSSLGIKMLDGQAASAEAISQIEPCDR-SRWRLEEFIEGAS 197

Query: 177 LTCGVMGDASLDVTEIAV----PKS-DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
            T G+       V   AV    P    F+  +LK    +     PA       + V+  A
Sbjct: 198 GTVGIFQVGPEFVIGDAVVFDIPDGRRFFDDQLKIRPKSRILHGPA------AERVRNDA 251

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
              +Q + C+G+ R DF++        +LE+N  PG+ P S  P     + +SF + L  
Sbjct: 252 LTLYQQLNCKGLVRLDFIYR--DSAPVYLEVNTIPGLHPDSTAPLSFQ-SRFSFEDFLT- 307

Query: 292 MVEDASCLR 300
            +  A+ +R
Sbjct: 308 -LSTAAQIR 315


>gi|188501473|gb|ACD54605.1| D-alanyl-D-alanine ligase-like protein [Adineta vaga]
          Length = 349

 Score =  190 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 85/342 (24%), Positives = 155/342 (45%), Gaps = 51/342 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDVDRS------------------ 41
           +A+L GG S E   ++ S K      + D  ++   I V++                   
Sbjct: 10  VALLAGGYSPEGVCAVWSAKHIEKLFQGDEEYQTYLIHVNKDGWYYEDSNNNGQRIHIDR 69

Query: 42  --VGLVLAHL---KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRS 96
               L L +    K  LAF ++ G  GEDG +Q  L++  +P+    +L+SA++ +K  +
Sbjct: 70  NNFSLTLPNQETVKFKLAFLLIGGAPGEDGQIQGYLQISNVPFIGCNLLSSAITFNKSIA 129

Query: 97  KQVVSSCG---VPVCPSILVNRFTMDSQHLI---------SPPYVIKPLKGGSSLGIIVI 144
            ++V S     + V PSI V R       L+           P ++KP   GSSLG+  I
Sbjct: 130 NRIVRSFNSSIIHVSPSIDVFRSVSVDDLLVLHALETNHFRLPLIVKPADSGSSLGVTKI 189

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM---GD-ASLDVTEIAVPK-SDF 199
            +   +      + ++   +Q+L+EQ++DG ELT G+    GD   L +TEI   + S F
Sbjct: 190 TEISQLNEAF--NVAFKESNQILVEQFIDGRELTVGLFKINGDIQVLPITEIVHQRASGF 247

Query: 200 YSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
           +  E K+  S  +  + PA +  ++ K+V+      ++ +   G+ R D +      K+F
Sbjct: 248 FDSETKFEGSPETQVITPANLNEEVKKQVEAGVRELYEKLNLSGLVRIDLMLKLPDEKIF 307

Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYS-------FRELLLWMV 293
           +LE+N  P  T  S+  +  A + ++       +++L   ++
Sbjct: 308 FLEVNTAPSQTEYSLIMQQMAQSEWAGDKRIELYKQLFKEVI 349


>gi|68535999|ref|YP_250704.1| putative D-alanine-D-alanine ligase (fragment) [Corynebacterium
           jeikeium K411]
 gi|68263598|emb|CAI37086.1| putative D-alanine-D-alanine ligase (fragment) [Corynebacterium
           jeikeium K411]
          Length = 202

 Score =  190 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 54/191 (28%), Positives = 92/191 (48%), Gaps = 11/191 (5%)

Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
              T D Q  +  P  +KP + GSS+GI  +   ++    +    +++H +++++E  + 
Sbjct: 11  RELTEDEQQRLGLPVFVKPARRGSSIGISKVDSWEAFAQAVEI--AFDHDNKMIVESMIH 68

Query: 174 GIELTCGVMGDASLDVTEIAVP--------KSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
           G E+ CGV+      V   A             FY ++ KY     T  +PA I  +   
Sbjct: 69  GREVECGVLQYPEGSVIASAPAMLEGTEDGDEGFYGFDAKYLDNTVTPSIPAPIGEEATA 128

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285
           EV+RLA    +A+ C G++R DF     + +V   EIN  PG TP+S++P+M    G  +
Sbjct: 129 EVRRLAVRTFEALNCEGLARVDFFVT-DNGEVILNEINTLPGFTPISMYPQMFIAGGMEY 187

Query: 286 RELLLWMVEDA 296
            +LL  ++  A
Sbjct: 188 PQLLDILIARA 198


>gi|313619832|gb|EFR91421.1| D-alanine--D-alanine ligase [Listeria innocua FSL S4-378]
          Length = 274

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 67/269 (24%), Positives = 116/269 (43%), Gaps = 59/269 (21%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---LAHLKPD------- 52
           +L GG S+E EVSL +  +  +AL+   F+   I +      V   L   K D       
Sbjct: 7   LLYGGKSAEHEVSLQTAFSVINALDLEKFEAEPIYITNEGEWVQGPLLSGKLDFVEQLRF 66

Query: 53  ---------------------------------LAFNVLHGNFGEDGLVQAILELLEIPY 79
                                            + F +LHG  GEDG VQ + E+L IPY
Sbjct: 67  SATDRVKLATAESEKSEGEAISPAVLEADGQETVVFPLLHGPNGEDGTVQGLFEVLNIPY 126

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVI 130
             +G+LAS+ +MDK+  K++ +  G+P  P++ V              + + +++ P  +
Sbjct: 127 VGNGVLASSAAMDKIVMKKIFADAGIPQVPAVAVRLIDWKNYQEEMITEMEEVLTYPVFV 186

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--D 188
           KP   GSS+GI        +   +  + ++ +  ++++EQ V   E+  GV+G+ +    
Sbjct: 187 KPANLGSSVGISKATNKTELIEAM--TEAFLYDRRVVVEQGVVAREIEMGVLGNDTPVCS 244

Query: 189 VTEIAVPKS---DFYSYELKYSSLNSTHV 214
           V    +P+     FY Y+ KY   N+  +
Sbjct: 245 VPGEILPEGAVAKFYDYKAKYQDNNTALI 273


>gi|168012025|ref|XP_001758703.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|76880176|dbj|BAE45860.1| D-alanine-D-alanine ligase [Physcomitrella patens subsp. patens]
 gi|162690313|gb|EDQ76681.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 966

 Score =  189 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 86/369 (23%), Positives = 148/369 (40%), Gaps = 70/369 (18%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKV----------------------SQIDV 38
           +A++ GG S ER +SL+S ++    LE     V                      +  D 
Sbjct: 113 VALVCGGPSEERGISLNSARSVLDHLEGGDVSVSCYYMNQKLEPFGIPSALMYSNTPEDF 172

Query: 39  D----------RSVGLVLAHLKP--DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           D          +S    L HL+   D+ F  LHG FGEDG +QA+LE   +PY  +G  A
Sbjct: 173 DFKIASTARSFKSQAEFLEHLQATSDIVFPALHGRFGEDGGIQALLESAGLPYIGTGAAA 232

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP-----------PYVIKPLKG 135
           + ++ DK  +   ++  G    P  LV    +D   L                V+KP + 
Sbjct: 233 AQVAFDKYDAAAEMAWHGFATLPIFLVENGKVDINRLRGWFEDNNINANSGRVVVKPARS 292

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI-ELTCGVMGDA--------S 186
           GSS+G+ V +   +         +    D+++IE + +G  E T  V+           +
Sbjct: 293 GSSVGVSVAEGLDTAVQHAEALFNKGGNDRVVIEMFAEGALEFTALVLDVGFGNETRPVA 352

Query: 187 LDVTEIAVPKSDF----------YSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
           L  TE+ +   D+          ++Y  KY  +   ++  P +   +   +++  A    
Sbjct: 353 LFPTEVELSGLDYESDGENETAIFNYRRKYLPTRQVSYHTPPRFSEETINKIRNRAADLF 412

Query: 236 QAIGCRGISRSDFLFDP----LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           + +  R I+R D    P     S  + + +IN+  GM   SI    A+  G +  ++L  
Sbjct: 413 RILNLRDIARVDGWLLPQVGGQSETIIFSDINLMSGMEQTSILFMQASLVGLAHVDILRT 472

Query: 292 MVEDASCLR 300
           ++  A C R
Sbjct: 473 LLRRA-CTR 480



 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 59/321 (18%), Positives = 106/321 (33%), Gaps = 71/321 (22%)

Query: 18  SGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEI 77
           S KA    L + G       +     +  A     + F  +HG+ GE+G +Q +L    +
Sbjct: 618 SAKASL--LSNEGHMELPSMITLEKFIEEAKQNDAVVFIAVHGSIGENGTLQELLAASGV 675

Query: 78  PYTHSGILASALSMDKMRSKQV---VSSCGVPVCP------SILVNRFTMDSQHLISP-- 126
            +T S   AS L MDK  +      +SS G+            ++ +       L     
Sbjct: 676 RHTGSAAEASRLCMDKAATGAAISHLSSQGIYTAAKALRKVHEILQKEDQVWMELKEELK 735

Query: 127 --PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS------------SSWNHG--------- 163
                +KP+  G S G+  +   + +     ++                HG         
Sbjct: 736 ANDLCVKPVGDGCSTGVAKLSCAEDL-AAYAKAVQTGQSQIPPGTFLKAHGIIEMPGVPP 794

Query: 164 DQLLIEQYVD---------------------------GIELTCGVMGDA----SLDVTEI 192
           ++LL E +++                            IE+T GV+G      +L+ +  
Sbjct: 795 ERLLFEPFIETDHIAVLSSTTGEDSKDGELIWEGKSRWIEVTVGVLGVQGVMHALNPSIT 854

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA---HQAIGCRGISRSDFL 249
                   + E K+      ++ P    L   + +           + +G  G +R D  
Sbjct: 855 VKETGSILTLEEKFQGGTGINLTPPPPSLATEEAIAGCKKRIEIVARTLGLDGFARIDAF 914

Query: 250 FDPLSRKVFWLEINVQPGMTP 270
               + +V  +E N  PGMTP
Sbjct: 915 MHADTGEVIIIEANTVPGMTP 935



 Score = 42.8 bits (100), Expect = 0.062,   Method: Composition-based stats.
 Identities = 16/35 (45%), Positives = 17/35 (48%), Gaps = 1/35 (2%)

Query: 3   VLMGGISSEREVSLSSGKACASALED-AGFKVSQI 36
           VL GG SSER+VSL SG      L       VS  
Sbjct: 514 VLFGGDSSERQVSLISGTNVWLNLRAWNDLDVSPF 548


>gi|168699147|ref|ZP_02731424.1| D-ala D-ala ligase [Gemmata obscuriglobus UQM 2246]
          Length = 332

 Score =  189 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 80/311 (25%), Positives = 142/311 (45%), Gaps = 29/311 (9%)

Query: 15  SLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF---GEDGLVQAI 71
           S ++ KA A  L   G  V+ +   R++   L +  PDL FN   G       +  V A+
Sbjct: 21  SPATVKAIADVLASLGHTVALLGDGRALIESLLNAPPDLVFNFAEGAGVSRSREARVPAV 80

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD------------ 119
            E+L +PYT S   A A+++DK  ++++  S G+ V   I +     +            
Sbjct: 81  CEMLGVPYTGSDPFALAVALDKDATRRLAESYGLTVPKGITLAPVAGEYDGDFAEFAPAL 140

Query: 120 SQHLISPPYVIKPLKGGSSLGI---IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
               ++ P + KP   GSS GI    +I         +++    N+   +L+E+Y+ G E
Sbjct: 141 EDAGLTLPVIAKPTCEGSSKGIRGKCLITSAAEFGPAVVELWR-NYQQPVLVEEYIAGDE 199

Query: 177 LTCGVMGDASLDVTEI------AVPKSDFYSYELKYSSLNST-HVLPAKIPLDIYKEVQR 229
           +T G+ G        +        P+S  YS E+K +  ++  +V PAK+P ++   ++ 
Sbjct: 200 ITIGLYGSDPPQPIGVMQIVPKQSPESFVYSLEVKRNWADAVDYVAPAKLPREVLHAIEA 259

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-IFPEMAAYAGYSFREL 288
            A   +  +GCR ++R DF         ++LEIN  PG+ P S     +A   G ++ EL
Sbjct: 260 DAMALYAGLGCRDVARLDFRVR--DGVPYFLEINPLPGLNPDSGDLCYLAYRMGLTYPEL 317

Query: 289 LLWMVEDASCL 299
           +  +++ A+  
Sbjct: 318 IGLILDSAAAR 328


>gi|258674439|gb|ACV86992.1| vancomycin resistance protein A [Enterococcus faecium]
 gi|258674441|gb|ACV86993.1| vancomycin resistance protein A [Enterococcus faecium]
 gi|258674443|gb|ACV86994.1| vancomycin resistance protein A [Enterococcus faecium]
          Length = 216

 Score =  189 bits (481), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 59/201 (29%), Positives = 101/201 (50%), Gaps = 9/201 (4%)

Query: 51  PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            D+AF+ LHG  GEDG +Q + EL  IP+    I +SA+ MDK  +  V  + G+     
Sbjct: 18  VDVAFSALHGKSGEDGSIQGLFELSGIPFVGCDIQSSAICMDKSLTYIVAKNAGIATPAF 77

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            ++N+         + P  +KP + GSS G+  +     +  D    S+  +  ++LIEQ
Sbjct: 78  WVINKDDRPVAATFTYPVFVKPARSGSSFGVKKVNSADEL--DYAIESARQYDSKILIEQ 135

Query: 171 YVDGIELTCGVMGD-ASLDVTEIAVPKSDFYSY------ELKYSSLNSTHVLPAKIPLDI 223
            V G E+ C V+G+ A+L V E+   +  +  +      E +  S N+   +PA +  + 
Sbjct: 136 AVSGCEVGCAVLGNSAALAVGEVDQIRLQYGIFRIHQEVEPEKGSENAVITVPADLSAEE 195

Query: 224 YKEVQRLAFLAHQAIGCRGIS 244
              +Q  A   ++A+GCRG++
Sbjct: 196 RGRIQETAKKIYKALGCRGLA 216


>gi|188501453|gb|ACD54586.1| D-alanyl-D-alanine ligase-like protein [Adineta vaga]
          Length = 349

 Score =  189 bits (481), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 86/323 (26%), Positives = 147/323 (45%), Gaps = 44/323 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDVDRS------------------ 41
           +A+L GG S E   ++ S K      + D  ++   I V++                   
Sbjct: 10  IALLAGGYSPEGVCAVWSAKHIEKLFQGDEEYQTYLIYVNKDGWYYEDSNNNEQKIHIDR 69

Query: 42  --VGLVLAH---LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRS 96
               L L +   +K  LAF ++ G  GEDG +Q  L++  +P+    +L+SA++ +K  +
Sbjct: 70  NNFSLTLPNQETIKFKLAFLLIGGAPGEDGQIQGYLQISNVPFIGCNLLSSAITFNKSIA 129

Query: 97  KQVVSSCG---VPVCPSILVNRFTMDSQHLI---------SPPYVIKPLKGGSSLGIIVI 144
            ++V S     + V PSI V R       L+           P ++KP   GSSLG+  I
Sbjct: 130 NRIVRSFNSSIIHVSPSIDVFRSVSVDDSLVLHALETNHFRLPLIVKPADSGSSLGVTKI 189

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM---GD-ASLDVTEIAVPK-SDF 199
            +   +      + ++   +Q+L+EQ++DG ELT G+    GD   L +TEI   + S F
Sbjct: 190 TEISQLNEAF--NVAFKESNQILVEQFIDGRELTVGLFKINGDIQVLPITEIVHQRASGF 247

Query: 200 YSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
           +  E K+  S  +  + PA +  +I K V+      ++ +   G+ R D +      K+F
Sbjct: 248 FDSETKFEGSPETQVITPANLNEEIKKRVEIGVRELYEKLNLSGLVRIDLMLRLPDEKIF 307

Query: 259 WLEINVQPGMTPVSIFPEMAAYA 281
           +LE+N  P  T  SI  +  A +
Sbjct: 308 FLEVNTAPSQTEYSIIMQQMAQS 330


>gi|154148214|ref|YP_001406160.1| D-alanyl-alanine synthetase A [Campylobacter hominis ATCC BAA-381]
 gi|153804223|gb|ABS51230.1| D-alanine--D-alanine ligase (D-alanylalanine
           synthetase)(D-Ala-D-Ala ligase) [Campylobacter hominis
           ATCC BAA-381]
          Length = 342

 Score =  189 bits (480), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 73/331 (22%), Positives = 131/331 (39%), Gaps = 56/331 (16%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------- 48
            ++ GG S E E+S+ S  +    ++     V   D DR+  L+                
Sbjct: 4   GIIFGGQSYEHEISIVSAISLKKVIKKECAYVF-CDQDRNFYLIEPKNMIANYFSSGEYK 62

Query: 49  ----------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
                                 ++ D+  NV+HG  GEDG + ++LE   IP+    + A
Sbjct: 63  KAKELTIASNGFYVNGMFSKTRVEADVFVNVIHGCDGEDGKLASLLEFFNIPFIGPRLEA 122

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           S +S DK  +K +  + G+      ++   T+ S   I  P ++KP   GSS+GI ++K 
Sbjct: 123 SVISYDKELTKNLAKAAGIKTIEYQIIKSSTLPS---IPYPLIVKPSHLGSSIGIKIVKN 179

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDVTEIAVP-KSDFYSYE 203
              +   +   +++      +IE Y++ ++     G   D  ++ + I  P K  F  Y 
Sbjct: 180 HNELSYAI--DTAFELDSSAIIEPYIEDVKEYNLAGCKIDGEIEFSIIEEPQKDKFLDYF 237

Query: 204 LKYSSLN-STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG-ISRSDFLFDPLSRKVFWLE 261
            KY   + S     A + L +   ++      +      G I R DF    ++ +V+  E
Sbjct: 238 QKYMDFSRSGKPQEANLGLSVKDNMKEAFRRVYNYGEFDGAIIRCDFFV--INNEVYLNE 295

Query: 262 INVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           IN  PG     +F          F ++L  +
Sbjct: 296 INPNPGSLANYLFN--------DFNDVLNRL 318


>gi|258674435|gb|ACV86990.1| vancomycin resistance protein A [Enterococcus faecium]
 gi|258674437|gb|ACV86991.1| vancomycin resistance protein A [Enterococcus faecium]
          Length = 214

 Score =  189 bits (480), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 59/201 (29%), Positives = 101/201 (50%), Gaps = 9/201 (4%)

Query: 51  PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            D+AF+ LHG  GEDG +Q + EL  IP+    I +SA+ MDK  +  V  + G+     
Sbjct: 16  VDVAFSALHGKSGEDGSIQGLFELSGIPFVGCDIQSSAICMDKSLTYIVAKNAGIATPAF 75

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            ++N+         + P  +KP + GSS G+  +     +  D    S+  +  ++LIEQ
Sbjct: 76  WVINKDDRPVAATFTYPVFVKPARSGSSFGVKKVNSADEL--DYAIESARQYDSKILIEQ 133

Query: 171 YVDGIELTCGVMGD-ASLDVTEIAVPKSDFYSY------ELKYSSLNSTHVLPAKIPLDI 223
            V G E+ C V+G+ A+L V E+   +  +  +      E +  S N+   +PA +  + 
Sbjct: 134 AVSGCEVGCAVLGNSAALAVGEVDQIRLQYGIFRIHQEVEPEKGSENAVITVPADLSAEE 193

Query: 224 YKEVQRLAFLAHQAIGCRGIS 244
              +Q  A   ++A+GCRG++
Sbjct: 194 RGRIQETAKKIYKALGCRGLA 214


>gi|21227150|ref|NP_633072.1| D-alanine-D-alanine ligase-like protein [Methanosarcina mazei Go1]
 gi|20905483|gb|AAM30744.1| D-alanine-D-alanine ligase related protein [Methanosarcina mazei
           Go1]
          Length = 700

 Score =  189 bits (480), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 81/289 (28%), Positives = 128/289 (44%), Gaps = 25/289 (8%)

Query: 31  FKVSQIDVDRSVGLVL--AHLKPDLAFNVLHGNFGEDG----LVQAILELLEIPYTHSGI 84
            K + +D   ++   L     K DL  N+    F  D      V A+ E L IPYT +G 
Sbjct: 350 IKFTFLDRHETLFEDLRKKAGKTDLVLNLCDEGFYNDPVKELHVPAMFEQLNIPYTGAGP 409

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGI--- 141
              A   DK   + V     +PV   +LV   +  S+  +S P ++KP  G SS GI   
Sbjct: 410 QCLAYCYDKSLVRGVAREMRIPVAKGVLVTDDSDISRLSLSFPLLVKPNSGDSSFGITQK 469

Query: 142 IVIKKDQSIPLDLLQSSSWNH--GDQLLIEQYVDGIELTCGVMGDA----SLDVTEI--- 192
            ++   + + LD+++ +         LL+E+++ G +++ G++G+      L +TE    
Sbjct: 470 SIVHSREEL-LDIMKETREKIGSDKPLLLEEFLPGKDISVGIIGNPPSCTVLPITEEDYS 528

Query: 193 AVPKS--DFYSYELKYSSLNS---THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           AVP        YE K+   +S      +PA +P    KEV R        +GCR  +R D
Sbjct: 529 AVPGELPKICGYEAKWLPDSSYWKIKSVPADLPEKTQKEVVRSCLALFTRLGCRDYARFD 588

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +  D   R    LE+N  PG        +MAAYA  S+  +L  ++  A
Sbjct: 589 WRLDAEGRPR-LLEVNPNPGWCWDGHLAKMAAYANISYSGMLAAIIGAA 636


>gi|300088095|ref|YP_003758617.1| D-alanine--D-alanine ligase [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
 gi|299527828|gb|ADJ26296.1| D-alanine--D-alanine ligase [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
          Length = 336

 Score =  188 bits (479), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 73/304 (24%), Positives = 136/304 (44%), Gaps = 20/304 (6%)

Query: 11  EREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF---GEDGL 67
           E + S  + +   +A+  AG    ++   R     +     D  FN+  G       +  
Sbjct: 26  EYD-STETVRLIEAAVSGAGHTPIRLGGGREFLRQVLDNPVDFVFNIAEGRGTGRAREAQ 84

Query: 68  VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---FTMDSQHLI 124
           + A+LE+L IPY+ +     ++++DK  +K++    GV     +++N      +     +
Sbjct: 85  IPAVLEMLGIPYSGADPQTLSMALDKPLTKRLADFAGVSTPAWLVLNDTANLAVADWASL 144

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW--NHGDQLLIEQYVDGIELTCGVM 182
             P  IKP   GSS GI +     S       +     ++   +L+E+++DG E+TCG++
Sbjct: 145 HFPVFIKPAFEGSSKGIRLNSLAASPAAAAAVAGRLLGDYRQPVLVEEFIDGDEITCGLI 204

Query: 183 GDA-------SLDVTEIAVPKSDFYSY--ELKYSSLN-STHVLPAKIPLDIYKEVQRLAF 232
           G+         L +  +       + Y  E+K    N   +  PA++P  + +E+ R A 
Sbjct: 205 GNTGQADNPMVLPLGILPHRADGPFIYSLEVKRDYRNRVEYQFPARLPAPVLEELTRQAV 264

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
                + CR  +R+DF  D   R  ++LEIN  PG++  S    +A   G+S  EL+  +
Sbjct: 265 RVFDTLNCRDFARADFRIDRRGR-PWFLEINPLPGLSLDSDLYIIARGLGWSHAELIQAV 323

Query: 293 VEDA 296
           ++ A
Sbjct: 324 LDAA 327


>gi|255586280|ref|XP_002533792.1| D-alanine-D-alanine ligase, putative [Ricinus communis]
 gi|223526281|gb|EEF28594.1| D-alanine-D-alanine ligase, putative [Ricinus communis]
          Length = 1000

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 83/380 (21%), Positives = 139/380 (36%), Gaps = 81/380 (21%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD--------------------- 39
           + ++ GG S+ER +SL+S ++    ++     VS   +D                     
Sbjct: 86  VGLICGGPSAERGISLNSARSVLDHIQGEDLHVSCYYIDYELNAYAISPAQVYSNTPADF 145

Query: 40  -----------RSVGLVLAHLK--PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
                       S+     HL    D+ F V+HG FGEDG +Q +LE   IP+  +G   
Sbjct: 146 DFKLESLARQFSSLSEFAEHLAASVDIVFPVIHGRFGEDGGIQELLENYNIPFVGTGSSE 205

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP-----------PYVIKPLKG 135
              + DK  +   +S  G    P+ LV     D   L                V+KP   
Sbjct: 206 CRQAFDKYYASIELSKRGFITVPNFLVQGKEADESELFKWFASNRLDPTSGTVVVKPAVA 265

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM-----GDASLDVT 190
           GSS+G+ V                    D++L+E ++DG      ++     G     V 
Sbjct: 266 GSSIGVTVAYGVADSLKKAKDLILEGIDDKVLVELFLDGGSEFTAIVVDVGSGFECHPVV 325

Query: 191 EIAV-------------PKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
            +                    ++Y  KY  +    +  P + P+DI K++++ A L  Q
Sbjct: 326 LLPTEVELQFHGSADIRENDAIFNYRRKYLPTQQVAYHTPPRFPVDIIKKIRQGASLLFQ 385

Query: 237 AIGCRGISRSDFLFDPLS----------------RKVFWLEINVQPGMTPVSIFPEMAAY 280
            +  R  +R D  + P S                  + + +IN+  GM   S   + A+ 
Sbjct: 386 RLRLRDFARIDGWYLPSSNSAFSSSEGKFGRTDLGTILFTDINLISGMEQTSFLFQQASK 445

Query: 281 AGYSFRELLLWMVEDASCLR 300
            G+S   +L  ++  A CLR
Sbjct: 446 VGFSHSNILRSIIHRA-CLR 464



 Score =  129 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 56/293 (19%), Positives = 103/293 (35%), Gaps = 66/293 (22%)

Query: 54  AFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV---VSSCGVPVCPS 110
            F  +HG  GEDG +Q++LE   +PYT  G++AS   MDK+ +      ++  GV     
Sbjct: 635 VFIAVHGGIGEDGTLQSMLEAQGVPYTGPGVVASKTCMDKVATSLALSHLADLGVLTIKK 694

Query: 111 ILVNRFTMDSQHLIS-----------PPYVIKPLKGGSSLGIIVIKKDQSI--------- 150
            +  +  + +   +                +KP + G S G+  ++  + +         
Sbjct: 695 EVYKKQDLQNMPALEVWHNLTSALQCETLCVKPARDGCSTGVARLRCTEDLAVYVKALED 754

Query: 151 ----------------------PLDLLQSSSWNHGDQLLIEQYVDGIE------------ 176
                                 P +LL    +   D++++                    
Sbjct: 755 CLLRIPPNSLSKAHGVIEMPHPPPELLIFEPFIETDEIVVSSKSTCENANRLMWKGHSRW 814

Query: 177 --LTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK---IPLDIYKEV 227
             +T GV+G      SL  +       D  S E K+      ++ P     +  ++    
Sbjct: 815 LEITVGVIGTRGSMHSLSPSVTVKETGDILSLEEKFQGGTGINLTPPPTSIVSNEVLDRC 874

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280
           ++   L    +   G SR D   +  S +V  +E+N  PGMTP ++    A  
Sbjct: 875 KQHIELIANTLQLEGFSRIDAFLNVDSGEVLIIEVNTVPGMTPSTVLIHQALA 927



 Score = 42.8 bits (100), Expect = 0.070,   Method: Composition-based stats.
 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 5/37 (13%)

Query: 3   VLMGGISSEREVSLSSGKAC---ASALEDAGFKVSQI 36
           VL GG +SER+VSL SG        A +D    V+  
Sbjct: 502 VLFGGDTSERQVSLMSGTNVWLKLQAFDDL--DVTPC 536


>gi|237751270|ref|ZP_04581750.1| D-alanyl-alanine synthetase A [Helicobacter bilis ATCC 43879]
 gi|229372636|gb|EEO23027.1| D-alanyl-alanine synthetase A [Helicobacter bilis ATCC 43879]
          Length = 349

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 74/332 (22%), Positives = 126/332 (37%), Gaps = 55/332 (16%)

Query: 3   VLMGGISSEREVSLSSGKACASAL-----------EDAGFKVSQID---VDRSVGLVLAH 48
           ++ GGIS E E+S+ S    A  L            D+      I+   +       LA+
Sbjct: 5   IIFGGISYEHEISIVSAITMAQKLGKNIKITHFIFLDSNHDFYLIESSNMKSKYFSSLAY 64

Query: 49  LKP------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84
            +                          L  N++HG  GEDG++  + +  +I Y    +
Sbjct: 65  KQAKKIEIGAGGFYESGFLGKKKMLNTGLLLNLIHGGDGEDGVLSGLFDFYKIAYIGPRL 124

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
            AS LS +K  +K     CGV   P  ++ R     +     PY+IKP   GSS+G+ V+
Sbjct: 125 EASILSYNKRLTKLYAKECGVETLPYYVLKRNET-CEIPFELPYIIKPTCLGSSIGVCVV 183

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDVTEIAVP-KSDFYS 201
             +    L      ++   ++++IE +  GI+     G   +    ++ I  P K D   
Sbjct: 184 --EDQAKLSYGLDCAFEFSNEVIIEPFKKGIKEYNLAGTKVNGEFILSLIEEPVKKDLLG 241

Query: 202 YELKYSSLN-STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260
           +E KY   + +  +  A+I   + K +       +       + R DF     S K++  
Sbjct: 242 FEDKYLDFSRTEEIKNAEITESLTKNLHEAFKKIYNTTFEGALIRCDFFV--SSDKIYLN 299

Query: 261 EINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           EIN  PG     +F          F  +L  +
Sbjct: 300 EINPIPGSMANYLFS--------DFESVLEKI 323


>gi|20093140|ref|NP_619215.1| hypothetical protein MA4352 [Methanosarcina acetivorans C2A]
 gi|19918479|gb|AAM07695.1| hypothetical protein (multi-domain) [Methanosarcina acetivorans
           C2A]
          Length = 703

 Score =  187 bits (476), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 84/329 (25%), Positives = 139/329 (42%), Gaps = 35/329 (10%)

Query: 1   MAVLMGGISSEREV---------SLSSGKACASALEDAGF-KVSQIDVDRSVGLVLAHL- 49
           + V++G    E +V          L +      AL +  + K + +D   ++   L    
Sbjct: 312 VVVVLGDPRKEDQVKPACVFDDDDLETVNRMKQALSEIPYMKFTFLDRHETLLEDLKKRA 371

Query: 50  -KPDLAFNVLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCG 104
            K DL  N+    F  D      V A+LE   IPYT +G    +   DK   +       
Sbjct: 372 GKTDLVLNLCDEGFNNDPIKELHVPALLEQFNIPYTGAGPQCLSFCYDKSLVRGAAREMR 431

Query: 105 VPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGI---IVIKKDQSIPLDLLQSSSWN 161
           +PV   +LV   +  S   +S P ++KP  G SS GI    ++   + I  D+++ +   
Sbjct: 432 IPVAKGVLVTGDSDVSSFSLSFPLLVKPNSGDSSYGITQKSIVHSREEI-FDIMKETREK 490

Query: 162 H--GDQLLIEQYVDGIELTCGVMGDA----SLDVTEI---AVPKS--DFYSYELKYSSLN 210
                  L+E+++ G +++ G++G+      L +TE    AVP+       YE K+   +
Sbjct: 491 IGADKPFLLEEFLPGKDISVGIIGNPPFCTVLPITEEDYSAVPEDLPRICGYEAKWLPDS 550

Query: 211 ---STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPG 267
                  +PA +P    KE+ R        +GCR  +R D+  D   R    LE+N  PG
Sbjct: 551 PYWKIKSVPAGLPEKTEKEIVRCCLALFTRLGCRDYARFDWRLDAEGR-PKLLEVNPNPG 609

Query: 268 MTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                   +MAAYA  S+  +L  ++E A
Sbjct: 610 WCWDGHLAKMAAYANISYSGMLAAILEAA 638


>gi|315928272|gb|EFV07588.1| D-alanine--D-alanine ligase family protein [Campylobacter jejuni
           subsp. jejuni DFVF1099]
          Length = 257

 Score =  187 bits (476), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 58/243 (23%), Positives = 113/243 (46%), Gaps = 14/243 (5%)

Query: 56  NVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR 115
           N++HG  GEDG + A+ E   I +    + AS LS +K  +K    S GV      ++ R
Sbjct: 3   NLIHGRDGEDGKIAALFEFYSIKFIGPRLEASVLSFNKELTKLYAKSVGVKTLDYTIL-R 61

Query: 116 FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175
              +S+  +S P +IKP + GSS+GI ++K ++ +     +   +   + L++E++ + I
Sbjct: 62  KNQNSKEKLSFPCIIKPARLGSSIGISIVKDEKDLEYA--KDVGFEFDNDLVVEEFKNNI 119

Query: 176 ELT--CGVMGDASLDVTEIAVP-KSDFYSYELKYSSLNST-HVLPAKIPLDIYKEVQRLA 231
           +     G M +     + I  P K +F  +E KY S +    ++ A +  ++ ++++   
Sbjct: 120 KEYNLAGCMINDEFVFSIIEEPKKKEFLDFEQKYLSFSGHNELIEADLSEELKEKLKDSF 179

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM-----AAYAGYSFR 286
              +  +    + R DF    L  +++  EIN  PG     +F +      A     S  
Sbjct: 180 KKIYNPLFKGALIRCDFFI--LDNEIYLNEINPNPGSLANYLFKDFNTTLNALADQISLE 237

Query: 287 ELL 289
           +++
Sbjct: 238 KMI 240


>gi|325111081|ref|YP_004272149.1| D-alanine--D-alanine ligase [Planctomyces brasiliensis DSM 5305]
 gi|324971349|gb|ADY62127.1| D-alanine--D-alanine ligase [Planctomyces brasiliensis DSM 5305]
          Length = 329

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 75/292 (25%), Positives = 126/292 (43%), Gaps = 17/292 (5%)

Query: 21  ACASALEDAGFKVSQIDVDRSVGLVLAH-LKPDLAFNVLHGNFG--EDGLVQAILELLEI 77
           A   AL   G +V +I   + +   LA     DL FN+  G  G   +  V +IL++ EI
Sbjct: 34  AIVDALVACGHEVDRIGRAKQLVHRLADGCSWDLVFNISEGLRGLSRESQVPSILDVYEI 93

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGS 137
           PYT S  L  ++ + K  +KQVV+  G+    S+LV++ +   +  +  P   KP+  G+
Sbjct: 94  PYTFSDPLTLSVCLHKELTKQVVARAGILTPASLLVSQLSDLDRLHLQFPLFAKPVAEGT 153

Query: 138 SLGI---IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS-------L 187
             G+     +     +   +           +L+E ++ G E T G++G          L
Sbjct: 154 GKGVTPASCVNSFNELHS-VCLQLLTEFEQPVLVESFLPGREFTVGILGTGEAARVVGTL 212

Query: 188 DVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY-KEVQRLAFLAHQAIGCRGISRS 246
           ++      +   YSY  K    +    +P     D   ++ + LA  A +A+GCR   R 
Sbjct: 213 EIVLREAAEVGVYSYVNKERCEDLVDYVPVNGHDDAEVRQAEELALTAWRALGCRDGGRI 272

Query: 247 DFLFDPLSRKVFWLEINVQPGMTP-VSIFPEMAAYAGYSFRELLLWMVEDAS 297
           D   D   R  F  E N   G+ P  S  P +A   G ++ +L+  +V  A+
Sbjct: 273 DVRSDSHGRPNFI-EANPLAGLHPHHSDLPMIATAVGMTYVDLIDQIVTSAA 323


>gi|154173627|ref|YP_001408215.1| D-alanyl-alanine synthetase A [Campylobacter curvus 525.92]
 gi|112802460|gb|EAT99804.1| D-alanine--D-alanine ligase (D-alanylalanine
           synthetase)(D-Ala-D-Ala ligase) [Campylobacter curvus
           525.92]
          Length = 347

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 71/334 (21%), Positives = 132/334 (39%), Gaps = 61/334 (18%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           + V+ G  S E E+S+ S     + L+    ++S I  D+     L              
Sbjct: 3   LGVVFGAKSFEHEISIVSAIVLKNVLKQ---ELSFIFCDKERKFYLIEPTDMRANFFSSG 59

Query: 47  -----------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                    L+ D+  N++HG  GEDG   ++ +   I Y    
Sbjct: 60  KYKKCKKLFLMACGFYTHSLFGVKRLEVDVYINLIHGMDGEDGKFASLFDFYGISYIGPR 119

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIV 143
           + AS +S +K  +K +    GV      ++   T +     + P ++KP + GSS+G+ V
Sbjct: 120 LEASVMSYNKELTKFLAQKVGVKTLDYEMI---TYEELPKFALPIILKPARLGSSIGVSV 176

Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDVTEIAVP-KSDFY 200
           +K +        +  ++    ++L+E +++G++     G M D  +  + +  P K +F 
Sbjct: 177 VKDESEFEYA--RDVAFEFDKEVLVEPFIEGVKEYNLAGCMIDGKMRFSIVEEPKKKEFL 234

Query: 201 SYELKYSSLNST-HVLPAKIPLDIYKEVQRLAFLAHQAIGCRG-ISRSDFLFDPLSRKVF 258
            YE KY S ++      A+I  ++   ++      +   G  G I R DF    +  +V+
Sbjct: 235 DYEQKYMSFSNESKAQEARIDEELRDRLKENFVKIY-GFGFEGAIIRCDFFV--IEGEVY 291

Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
             EIN  PG     +F          F  +L  +
Sbjct: 292 LNEINPNPGSLANYLFE--------DFEAMLNAL 317


>gi|94968579|ref|YP_590627.1| D-alanine--D-alanine ligase [Candidatus Koribacter versatilis
           Ellin345]
 gi|94550629|gb|ABF40553.1| D-alanine--D-alanine ligase [Candidatus Koribacter versatilis
           Ellin345]
          Length = 344

 Score =  186 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 66/302 (21%), Positives = 126/302 (41%), Gaps = 24/302 (7%)

Query: 20  KACASALEDAGFKV--SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGED---GLVQAILEL 74
           +   +ALE  G +     +D  +     LA    DL FN+     G+D     V A L+L
Sbjct: 42  EEIFAALEKLGHEPSYHILDGHQQSLFALAKSGTDLIFNLTESYDGDDTKEMHVTAFLDL 101

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLK 134
           + IPYT +G     L+ DK  +K++ +  G+         R  +D  H +S P ++KP  
Sbjct: 102 VNIPYTGTGPHGHMLAQDKSLAKKMFAFHGIQSPYFATAYRGIVDHAHDVSFPLIVKPTS 161

Query: 135 GGSSLGI---IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG----DASL 187
              S+GI    V+   + +   +    +       LIE+Y++G E+   ++G      +L
Sbjct: 162 EDGSIGIDAAAVVSSVKELMERVAYIQA-EFDSPALIEEYIEGREIYSAILGSYETANAL 220

Query: 188 DVTEIAVPK-----SDFYSYELKYSSL-----NSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
            + E+ + K         S ++K+         +   +   +  +   ++   A  A++A
Sbjct: 221 PLVELDLSKLPKGMPKIASQDVKFEKDTEAYKKTKSAVAEDLDEETETKLTATAIKAYRA 280

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           +  R   R D        +V+ +E N  P ++    F   A  +G S+ +++  +V+ A 
Sbjct: 281 VKLRDYGRIDMRLSTK-GEVYVIEANPNPWLSSGQEFAMAAKKSGLSYTQMIGEIVDHAI 339

Query: 298 CL 299
             
Sbjct: 340 AR 341


>gi|224368436|ref|YP_002602599.1| DdlB2 [Desulfobacterium autotrophicum HRM2]
 gi|223691152|gb|ACN14435.1| DdlB2 [Desulfobacterium autotrophicum HRM2]
          Length = 332

 Score =  186 bits (474), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 75/297 (25%), Positives = 135/297 (45%), Gaps = 17/297 (5%)

Query: 15  SLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH-LKPDLAFNVLHGNFG--EDGLVQAI 71
           S+ + +A  + L+  G +  +I     +   L    + DL FN+  G  G   +  + AI
Sbjct: 28  SVETIEAIETTLQGLGHETRRIGNAIRLTERLVQGERWDLVFNIAEGLHGIGREAQIPAI 87

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIK 131
           L+L  IPYT S  +  A+++ K  +K ++   G+      + N           PP+ +K
Sbjct: 88  LDLYNIPYTFSDPMVMAVTLHKGMTKHIIRDAGLATADFKVANSARDAWNLPFDPPFFVK 147

Query: 132 PLKGGSSLGI---IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD---- 184
           P+  G+ +GI    ++K    +P  + Q         +LIE+++ G E T G++G     
Sbjct: 148 PVAEGTGMGITAKSLVKNALDLP-GVCQELVEQFHQPVLIEEFLTGREFTVGIVGTGTRA 206

Query: 185 ---ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGC 240
               ++++  I+  K + YS+E K    +    LP +     + + V+ LA  A + +GC
Sbjct: 207 QVMGTMEIIVISSKKDEVYSFENKEGWKSKVQYLPLSPGTDPLIQAVEDLALSAWKVLGC 266

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTP-VSIFPEMAAYAGYSFRELLLWMVEDA 296
           R   R D   D   R  F  E+N   G+ P  S  P +  + G S+ +L+  ++E A
Sbjct: 267 RDGGRIDIRCDAAGRPSFI-EVNPLAGLRPEYSDLPIVCQFFGTSYVQLIELILESA 322


>gi|224091078|ref|XP_002309171.1| predicted protein [Populus trichocarpa]
 gi|222855147|gb|EEE92694.1| predicted protein [Populus trichocarpa]
          Length = 931

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 81/380 (21%), Positives = 142/380 (37%), Gaps = 81/380 (21%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD--------------------- 39
           + ++ GG S+ER +SL+S ++    +E    +VS   +D                     
Sbjct: 84  VGLICGGPSAERGISLNSARSVLDHIEGDDLQVSCYYIDYDMNAFAISSAQVYSNTPADF 143

Query: 40  -----------RSVGLVLAHLK--PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
                       S+     HL    D+ F V+HG FGEDG +Q +LE   +P+  +G   
Sbjct: 144 DFKLESLAKGFSSLDEFAEHLAASVDIVFPVIHGRFGEDGGIQELLERHNVPFVGTGSRE 203

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP-----------PYVIKPLKG 135
              + DK  +   +S  G    PS LV    ++   L                V+KP + 
Sbjct: 204 CRKAFDKYDASLELSKQGFITVPSFLVQGSEIEECELSKWFTSNQLDPNSGKVVVKPARA 263

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM-----GDASLDVT 190
           GSS+G+ V               S    D++L+E +++G      ++     G     V 
Sbjct: 264 GSSIGVTVAYGVSDSLKKANDLISEGIDDKILVEIFLEGGSEFTAIVLDVGSGFDCHPVV 323

Query: 191 EIAV-------------PKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
            +                +   ++Y  KY  +    +  P + PL + + ++  A +  +
Sbjct: 324 LLPTEVEIQFHGSVDVREEDAIFNYRRKYLPTQQVAYHTPPRFPLKVIENIREGASILFR 383

Query: 237 AIGCRGISRSDFLFDPLS----------------RKVFWLEINVQPGMTPVSIFPEMAAY 280
            +G R  +R D  F P S                  + + +IN+  GM   S   + A+ 
Sbjct: 384 QLGLRDFARIDGWFLPNSMHALSSSAGKFGRTELGTIIYNDINLISGMEQTSFLFQQASK 443

Query: 281 AGYSFRELLLWMVEDASCLR 300
            G+S   +L  ++  A CLR
Sbjct: 444 VGFSHSNILRSVIHRA-CLR 462



 Score =  121 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 60/298 (20%), Positives = 110/298 (36%), Gaps = 76/298 (25%)

Query: 54  AFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV---VSSCGVPVCPS 110
            F  +HG  GEDG +Q++LE   +P+T  G  AS   MDK+ +      ++  G+     
Sbjct: 616 VFIAVHGGIGEDGTLQSLLESEGVPHTGPGAAASKTCMDKVATSLALSHLADLGI----- 670

Query: 111 ILVNRFTMDSQHLISPP----------------YVIKPLKGGSSLGIIVIKKDQSIPLDL 154
           + +N+     + L++ P                  +KP + G S G+  +   + + + +
Sbjct: 671 LTINKDVCRKEDLLNMPALEIWDELISKLQCETLCVKPARDGCSTGVARLCCVEDLAVYI 730

Query: 155 LQ-----------SSSWNHG---------DQLLIEQYVD--------------------- 173
                        S S +HG         ++L+ E +++                     
Sbjct: 731 KALKDCLLRIPPDSFSKSHGMIEMPSPPPERLIFEPFIETDEIVVSSKSGGEKAQGLVWK 790

Query: 174 ----GIELTCGVMGD----ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK---IPLD 222
                +E+T GV+G      SL  +       D  S E K+      ++ P     +  +
Sbjct: 791 GNSRWVEITVGVIGTLGSMRSLSPSVTVKETGDILSLEEKFQGGTGINLTPPPASIVSNE 850

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280
             +  +    L    +   G SR D   +  S +V  +E+N  PGMTP ++    A  
Sbjct: 851 ALERCKHRIELIANTLQLEGFSRIDAFLNVDSGEVLIIEVNTVPGMTPSTVLIHQALA 908



 Score = 39.7 bits (92), Expect = 0.46,   Method: Composition-based stats.
 Identities = 12/20 (60%), Positives = 14/20 (70%)

Query: 3   VLMGGISSEREVSLSSGKAC 22
           VL GG +SER+VSL SG   
Sbjct: 500 VLFGGDTSERQVSLMSGTNV 519


>gi|193214834|ref|YP_001996033.1| type 11 methyltransferase [Chloroherpeton thalassium ATCC 35110]
 gi|193088311|gb|ACF13586.1| Methyltransferase type 11 [Chloroherpeton thalassium ATCC 35110]
          Length = 656

 Score =  186 bits (472), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 61/297 (20%), Positives = 127/297 (42%), Gaps = 25/297 (8%)

Query: 24  SALED-AGFKVSQIDVDRSVGLVLAHLKP--DLAFNVLHGNFGEDGL----VQAILELLE 76
           +AL     +K++ ++   ++   LA +KP  D  FN+    F  D      + ++LE++ 
Sbjct: 339 NALRQIDRYKITYLNNHNTLIHDLARIKPKVDFVFNLCDEGFNNDPRKELHIPSLLEIMG 398

Query: 77  IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGG 136
             YT SG    A   DK   + +    G+ V  +  +       +   + P + KP  G 
Sbjct: 399 FRYTGSGPQCLAYCYDKSLVRGIAKEMGIAVPEAFFIRPEETSFELPFNFPVIAKPNFGD 458

Query: 137 SSLGI---IVIKKDQSIPLDL-LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192
           SS GI    V    + +   +    S   +   +L+E+++ G +L+ G++G+A      +
Sbjct: 459 SSFGITTRSVSYTIEELVNAISEIRSKIGYEKPILVEEFLTGKDLSLGIIGNAPESYMVL 518

Query: 193 AVPKSDF----------YSYELKYSSLN---STHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
            + + D+            YE K+   +   +   +PA+I  +  K ++    +  + + 
Sbjct: 519 PIIEEDYSGLPESLPKICGYEAKWLPDSPYATVKSIPAQISEETKKLLEEWCVMLFERLE 578

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           CR   R D+  D  +     LE+N  PG        +M+A++   + +++  ++ +A
Sbjct: 579 CRDYCRFDWRLDA-NGNPKLLEVNPNPGWCWDGHLAKMSAFSEIDYPKMIETILAEA 634


>gi|255940354|ref|XP_002560946.1| Pc16g06100 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211585569|emb|CAP93280.1| Pc16g06100 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 363

 Score =  186 bits (472), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 85/340 (25%), Positives = 133/340 (39%), Gaps = 42/340 (12%)

Query: 2   AVLMGGISSEREVSL-SSGK--ACASALEDAGFKVSQIDVDRSVGLVLAHLK---PDLAF 55
           A L  G S E+  +L   G+  A  +ALE  G  V+ +    ++  +LA  K    DL F
Sbjct: 20  AYLSHGYSEEQCAALPHRGEIDAVMAALERLGHHVTLVSGIEALVQLLAAGKHNGWDLVF 79

Query: 56  NVLHGNFG--EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
           N+  G  G   +  V A+LE  ++PYT S     AL  +K  +K ++    +P  P  ++
Sbjct: 80  NMAQGFHGSARESQVPALLEAYQVPYTFSDAATMALCQNKQVTKTILDRHMIPNAPFSVI 139

Query: 114 NRFTMDS------QHLISPPYVIKPLKGGSSLGI---IVIKKDQSIPLDLLQSSSWNHGD 164
               + +        L   P  +KP+  GSS GI     +K+   +   + +      G 
Sbjct: 140 PMLDVVADFPKGFAALPPYPLFVKPVTEGSSKGIDGFNKVKEPADLKPAVWELVRKFPGQ 199

Query: 165 QLLIEQYVDGIELTCGVMGDASLD-VTEIAV------PKS------------DFYSYELK 205
            +L+E ++ G E T  ++G      V  I        P+             DF S + K
Sbjct: 200 DILVESFLSGREFTVSILGTGPHSRVIGIREHIWRTSPEHSNTNGYHSDGSLDFASRDSK 259

Query: 206 YSSLNSTHVLP--AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF--DPLSRKVFWLE 261
            S      +      +     K   ++A    +   CR   R D  F  D        LE
Sbjct: 260 SSKGEKMLLYNDSHDMDEPQIKATCQVALQTWKVFNCRDGGRVDIRFDSDEPGSTPNVLE 319

Query: 262 INVQPGMTP-VSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           +N   G+ P  S  P  A   G SF ELL  ++  + C R
Sbjct: 320 VNPIAGLLPGHSPLPATAKMNGLSFEELLSEII-GSVCER 358


>gi|624691|gb|AAA60988.1| D-alanine-D-alanine ligase-related enzyme [Enterococcus
           casseliflavus]
          Length = 200

 Score =  185 bits (470), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 53/202 (26%), Positives = 93/202 (46%), Gaps = 14/202 (6%)

Query: 71  ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------Q 121
            LE + +PY  +G+L SA  MDK+ +K ++ + G+P  P + V +              +
Sbjct: 1   FLETIGMPYVGAGVLTSACGMDKIMTKYILQAAGIPQVPYVPVLKNAWKENPKKIFDQCE 60

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
             +  P  +KP   GSS+GI   +  Q +   L +  ++ +  + ++EQ ++  E+   V
Sbjct: 61  GSLLYPMFVKPANMGSSVGISKAENRQELQNALQE--AYRYDTRAIVEQGIEAREIEVAV 118

Query: 182 MGDASLDVTEIA--VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
           +G+  +  T     V    FY Y  KY        +PA+IP +   + Q  A  A+  +G
Sbjct: 119 LGNEDVRTTMPGEIVKDVAFYDYNSKYIDNRIEMQIPAQIPEETQAKAQEFAKKAYTMLG 178

Query: 240 CRGISRSDFLFDPLSRKVFWLE 261
             G+SR DF       ++F  E
Sbjct: 179 GSGLSRCDFFLTNK-NELFLNE 199


>gi|624693|gb|AAA60989.1| D-alanine-D-alanine ligase-related enzyme [Enterococcus
           casseliflavus]
          Length = 200

 Score =  185 bits (470), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 52/202 (25%), Positives = 93/202 (46%), Gaps = 14/202 (6%)

Query: 71  ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------Q 121
            LE + +PY  +G+L SA  MDK+ +K ++ + G+P  P + V +              +
Sbjct: 1   FLETIGMPYVGAGVLTSACGMDKIMTKYILQAAGIPQVPYVPVLKNAWKENPKKIFDQCE 60

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
             +  P  +KP   GSS+GI   +  + +   L +  ++ +  + ++EQ ++  E+   V
Sbjct: 61  GSLLYPMFVKPANMGSSVGISKAENREELQNALQE--AYRYDTRAIVEQGIEAREIEVAV 118

Query: 182 MGDASLDVTEIA--VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
           +G+  +  T     V    FY Y  KY        +PA+IP +   + Q  A  A+  +G
Sbjct: 119 LGNEDVRTTMPGEIVKDVAFYDYNSKYIDNRIEMQIPAQIPEETQAKAQEFAKKAYTMLG 178

Query: 240 CRGISRSDFLFDPLSRKVFWLE 261
             G+SR DF       ++F  E
Sbjct: 179 GSGLSRCDFFLTNK-NELFLNE 199


>gi|218462035|ref|ZP_03502126.1| putative D-alanine--D-alanine ligase A [Rhizobium etli Kim 5]
          Length = 268

 Score =  184 bits (469), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 69/253 (27%), Positives = 111/253 (43%), Gaps = 49/253 (19%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           +AVL GG S+E EVS+ S      AL+   +    I + R    + +             
Sbjct: 10  IAVLFGGRSAEHEVSILSATNVMGALKPEKYDAFPIFITREGRWLTSAFVDGALATPSSG 69

Query: 50  --------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                       D+ F VLHG  GEDG VQ + ++  +P    G
Sbjct: 70  TEICLVPGGCGRVMAIPANGAPHELATIDMLFPVLHGLHGEDGSVQGVAQVARVPLAGCG 129

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSL 139
           IL SA ++DK  +K+++ + G+PV  ++ ++  T  S    +  +  P  IKP + GSS+
Sbjct: 130 ILGSAAALDKEIAKRLLRAAGLPVARAVTIHEGTSPSLAALEGELGLPLFIKPARQGSSV 189

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD-----VTEIAV 194
           G+  +   Q     L  + ++ H   LL E+++ G E+   V+ DA+         EI  
Sbjct: 190 GVAKVHASQEFAGAL--AEAFRHDRTLLAEEFIVGREIEFSVLEDAAGKLFVSRPGEIVP 247

Query: 195 PKS-DFYSYELKY 206
            +S  FYSY+ KY
Sbjct: 248 AESHGFYSYDAKY 260


>gi|115379297|ref|ZP_01466409.1| D-ala D-ala ligase C-terminus family [Stigmatella aurantiaca
           DW4/3-1]
 gi|310821036|ref|YP_003953394.1| d-ala d-ala ligase family [Stigmatella aurantiaca DW4/3-1]
 gi|115363707|gb|EAU62830.1| D-ala D-ala ligase C-terminus family [Stigmatella aurantiaca
           DW4/3-1]
 gi|309394108|gb|ADO71567.1| D-ala D-ala ligase family [Stigmatella aurantiaca DW4/3-1]
          Length = 344

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 65/297 (21%), Positives = 127/297 (42%), Gaps = 25/297 (8%)

Query: 22  CASALEDAGFKVSQIDVDRSVGLVLAHLK---PDLAFNVLHGNFGEDGL----VQAILEL 74
              +L   G + S I V   V  +L  ++    DL FN+    F ED      V A++E+
Sbjct: 27  VGESLRKLGHQPSFIAVSDRVFDILQEIERSGCDLVFNLCE-TFAEDYRLEVNVAALMEM 85

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLK 134
             + +T SG     L+ DK+ +KQ++    +P       +  T+++   ++ P ++KP +
Sbjct: 86  ARVKFTGSGTAGLLLAQDKILTKQLLEYHEIPTPDFATFDGSTVETNGDLAFPLIVKPAR 145

Query: 135 GGSSLGI---IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
             +S+GI    ++   + +  D ++       D+ L E+++ G E+  G++G   L    
Sbjct: 146 SDASIGIGGKSLVNSWEQL-TDRVREIRKELRDEALAEEFIQGREVYVGIIGTKELPEIL 204

Query: 192 IAV---------PKSDFYSYELKYSS---LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
             V          K      E+K+      +   V+   I   + + V+R A LA++A+ 
Sbjct: 205 PIVELDFGNWDKDKPTISDREVKFGPETEGSPKLVIARDISPVLRQRVERAALLAYRALK 264

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            +  +R D          + LE+N  P +         A   G S+ +L+  +++ A
Sbjct: 265 LQDYARIDLRISEQDD-PYILEVNPNPYLEDKGELALAAREKGLSYTQLIGRILDSA 320


>gi|297379935|gb|ADI34822.1| D-alanine--D-alanine ligase [Helicobacter pylori v225d]
          Length = 296

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 56/229 (24%), Positives = 104/229 (45%), Gaps = 12/229 (5%)

Query: 53  LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
           L  N++HG  GEDG + ++LE   I +    I AS LS +K  +K      GV     +L
Sbjct: 39  LVINLVHGGDGEDGKLASLLEFYRIAFIGPRIEASVLSYNKYLTKLYAKDLGVKALDHVL 98

Query: 113 VNRFTMDSQHLI---SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
           +N     +   +   + P++IKP   GSSLG+ V+K+++ +   L    ++ +  ++LIE
Sbjct: 99  LNEKNRANALNLIGFNFPFIIKPSNAGSSLGVSVVKEEKELIYAL--DGAFEYSKEVLIE 156

Query: 170 QYVDGIE----LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
            ++ G++      C +  D      E    K +F  ++ KY   +      A +   + +
Sbjct: 157 PFIQGVKEYNLAGCKIKKDFCFSYVE-EPNKQEFLDFKQKYLDFSRNKAPKANLSNALEE 215

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274
           +++      +  +    + R DF    +  +V+  EIN  PG     +F
Sbjct: 216 QLKENFKKLYNDLFDGALIRCDFFV--IENEVYLNEINPIPGSLANYLF 262


>gi|307299025|ref|ZP_07578827.1| D-alanine--D-alanine ligase [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306915450|gb|EFN45835.1| D-alanine--D-alanine ligase [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 315

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 77/295 (26%), Positives = 135/295 (45%), Gaps = 24/295 (8%)

Query: 20  KACASALEDAGFKV--SQIDVDRSVGLVLAHLKPDLAFNV--LHGNFGEDGLVQAILELL 75
            +  S+LE   F+V     ++D    L       DL FN+    GN      + A+L+LL
Sbjct: 20  NSVVSSLEKI-FEVDSRPFEIDAVGRLR----GTDLVFNLTTAMGNTERQVHLPAVLDLL 74

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKG 135
            IP+T SG  A+AL ++K  +K ++ + G+       V           S P ++KP+K 
Sbjct: 75  GIPFTGSGTTANALCINKTLTKLIMKAYGISTPEFFSVRPGETADNLPFS-PAIVKPVKE 133

Query: 136 GSSLGI---IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192
           G + GI    V++    +   + +          L+E++++G E T G++G+  L + EI
Sbjct: 134 GGAKGIWEDSVVESVDDMQRAVSRIHE-RFQQPALVERFIEGREFTVGIVGNEVLPIMEI 192

Query: 193 AVPK-----SDFYSYELKYSSLN-STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRS 246
                      FYSY +K    + + ++ PAKI       ++  +    Q +  +   R 
Sbjct: 193 DFSSLPDHLETFYSYRVKQFHGDETNYICPAKISRREETVIREFSMRVFQVLDLKDYCRI 252

Query: 247 DFLFDPLSRKVFWLEINVQPGMTP-VSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           D   D    K+++LE+N  P + P  S   +MA   G+S+ +L+  +V  AS +R
Sbjct: 253 DLKID-DEGKIYFLEVNSLPLLVPDYSDIVKMAETRGWSYEDLINRIV--ASAIR 304


>gi|84310005|emb|CAI84700.1| D-alanine-D-alanine ligase [Lactobacillus plantarum]
 gi|84310007|emb|CAI84701.1| D-alanine-D-alanine ligase [Lactobacillus plantarum]
 gi|84310009|emb|CAI84702.1| D-alanine-D-alanine ligase [Lactobacillus plantarum]
 gi|84310011|emb|CAI84703.1| D-alanine-D-alanine ligase [Lactobacillus plantarum]
 gi|170293287|gb|ACB12692.1| D-alanine-D-alanine ligase [Lactobacillus plantarum]
          Length = 225

 Score =  184 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 69/225 (30%), Positives = 120/225 (53%), Gaps = 14/225 (6%)

Query: 37  DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRS 96
           D    +  +      D+ + V+HGN GEDG +Q + +LL+ PY  SG+LASA S DK  +
Sbjct: 3   DPLAPIKNLTLAKDIDIFYPVVHGNLGEDGTLQGLFKLLKKPYVGSGVLASAASFDKDIT 62

Query: 97  KQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150
           KQ+++   +     ++V     D       Q  +     IKP   GSS+GI   + +Q  
Sbjct: 63  KQILTHHHIQNTKYVVVTPENRDQMTYAYLQAHVGDHLFIKPANQGSSIGIHKAENEQEY 122

Query: 151 PLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVT---EIAVPKSD-FYSYELK 205
              L  +  +++  ++L+E+ +D   E+ C ++G+ +   +    I VPK+D FY Y  K
Sbjct: 123 LDGLADAFKYDY--KILVEESIDNPREVECSILGNENPKASKLGAIDVPKTDTFYDYNNK 180

Query: 206 YSSLNS-THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
           +   +  T  LP ++P D+ K +Q+++  A +A+G +G++R DFL
Sbjct: 181 FVDASGVTFELPVELPADLTKRIQQMSLDAFKALGLKGMARVDFL 225


>gi|219685886|ref|ZP_03540692.1| D-alanine--D-alanine ligase [Borrelia garinii Far04]
 gi|219672585|gb|EED29618.1| D-alanine--D-alanine ligase [Borrelia garinii Far04]
          Length = 287

 Score =  184 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 70/282 (24%), Positives = 125/282 (44%), Gaps = 50/282 (17%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDA-GFKVSQIDVDRSVGLVL--------------- 46
           ++ GG+S E E+S  S  +   AL D   + +  + +D+  G+                 
Sbjct: 7   LIFGGVSFEHEISCKSAYSIYLALLDLNKYNIYPVYIDKCTGIWYLLDSVSDPPKLIDID 66

Query: 47  -----------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
                             +L+ D+ F V+HG  GEDG +Q +L++++IP   +GI+ SA+
Sbjct: 67  VLPIVSLLPGIGIFSNNKNLEIDVVFPVVHGRTGEDGAIQGVLKVMDIPCIGAGIIGSAI 126

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPLKGGSSLG 140
           S +K   K ++ S  +P+ P I   +            + +  +  P ++KP   GSS+G
Sbjct: 127 SSNKYFCKLLLKSFNIPLVPFIGFRQHDYLLDKEEIKRNVREALGYPVIVKPAVLGSSIG 186

Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS---LDVTEIAVPKS 197
           I V   +  I        +  +   +LIE++++  E+ C V+G+         EI V   
Sbjct: 187 INVAYSESQIE--FFIEEALKYDLTILIEKFIEAREIECSVIGNEKIKIFSPGEIVVQDF 244

Query: 198 DFYSYELKYS--SLNSTHVL-PAKIPLDIYKEVQRLAFLAHQ 236
            FY Y+ KYS    NS     PA++  +    ++  AFL ++
Sbjct: 245 IFYDYDAKYSVIPGNSIIFNIPAQLETNQLLSIKEYAFLVYK 286


>gi|302035853|ref|YP_003796175.1| d-alanine-d-alanine ligase [Candidatus Nitrospira defluvii]
 gi|300603917|emb|CBK40249.1| D-alanine-D-alanine ligase [Candidatus Nitrospira defluvii]
          Length = 340

 Score =  184 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 78/295 (26%), Positives = 130/295 (44%), Gaps = 25/295 (8%)

Query: 22  CASALEDAGFKVSQIDVDRSVGLVLAHL---KPDLAFNVLHGNFGE---DGLVQAILELL 75
             S L   G +V  + V   + ++ A +   KP +AFN+L    G    D  V + LEL+
Sbjct: 36  VVSTLRKLGHEVQPLGVKSDLEVIRAAVEDWKPHIAFNLLEEFDGRAVYDQNVVSYLELM 95

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN-RFTMDSQHLISPPYVIKPLK 134
            IPYT        L+ DK  +KQV+S   +P    ++V     +     +  P ++K + 
Sbjct: 96  RIPYTGCNPRGLMLARDKALAKQVMSYHRIPYPEFMVVPLHRMVRRPKYLPFPLIVKSIS 155

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ---LLIEQYVDGIELTCGVMGDASL---D 188
             +SLGI            L +  ++ H +     L+E+Y++G EL  GVMG+A L    
Sbjct: 156 EEASLGISQASIVDDDEK-LRERVAFIHDNVGTGALVERYIEGRELYVGVMGNAHLQVFP 214

Query: 189 VTEIAVPK---------SDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAI 238
           V E+ + K         ++   +  KY          A+ +P  +   VQ LA   ++A+
Sbjct: 215 VWELVMDKMPEEARRIATERVKWSRKYQDKYGICSCEARNLPDGVVDHVQHLAKRVYRAL 274

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           G  G +R D   D     V+ LE N  P +     F + A  A  ++++LL  ++
Sbjct: 275 GLSGYARIDMRMD-QDGNVYVLEANPNPQIASGEDFADSAEKADLAYKDLLQELL 328


>gi|254459120|ref|ZP_05072542.1| D-alanine-D-alanine ligase [Campylobacterales bacterium GD 1]
 gi|207084013|gb|EDZ61303.1| D-alanine-D-alanine ligase [Campylobacterales bacterium GD 1]
          Length = 345

 Score =  184 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 68/312 (21%), Positives = 127/312 (40%), Gaps = 47/312 (15%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK------------ 50
           +L GG S E E+S+ S       L  +GF +S +  D+     L                
Sbjct: 5   ILFGGASFEHEISIVSAITLKGKL--SGFDLSFVFCDQDHKFYLIEASKMKATTFSRGEH 62

Query: 51  ---PDL---------------------AFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
              P L                       N++HG  GEDG + ++L+   I Y      A
Sbjct: 63  KKMPQLSITNGSFSQKTMFSSVEHTGTVLNLIHGADGEDGTIASLLDFFSIKYIGPRTDA 122

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           S  S DK  +K +  +  +      +++     + ++  P  +IKP + GSS+G+ +++ 
Sbjct: 123 SVFSYDKRYTKWLCVAKNIKSVEYEVLSSKEHTNINIPYP-IIIKPARLGSSIGVSIVRN 181

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDVTEIAVP-KSDFYSYE 203
           +  +  D     ++     +++E +++G++     G M    +  + +  P K +F  +E
Sbjct: 182 ESEL--DYALDVAFEFDKTVIVEPFIEGVKEYNLAGFMAKGEVYFSIVEEPQKEEFLDFE 239

Query: 204 LKYSSLN-STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
            KY   + S  VL A I  ++  +++R     ++ +    + R DF    +  KV   EI
Sbjct: 240 KKYMDFSRSEKVLKAGISPELEVKLKRAFEKVYKNLFEGALIRCDFFV--VDGKVLLNEI 297

Query: 263 NVQPGMTPVSIF 274
           N  PG     +F
Sbjct: 298 NPIPGSMANYLF 309


>gi|1255019|gb|AAB17900.1| D-alanine:D-alanine ligase [Enterococcus pseudoavium]
          Length = 200

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 54/202 (26%), Positives = 99/202 (49%), Gaps = 14/202 (6%)

Query: 71  ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------Q 121
            LE L++PY  +G++ SA +MDK+ +K ++ + G+P  P + V +              +
Sbjct: 1   FLETLDMPYVGAGVMTSACAMDKIMTKYILQAAGIPQVPYVPVLKNQWKENPKQVFDKCE 60

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
             +  P  IKP   GSS+GI   +  + +   L +  ++ +  + L+EQ +D  E+   V
Sbjct: 61  GTLLYPMFIKPANMGSSVGISRAENREELQNALKE--AYRYDSRALVEQGIDAREIEVAV 118

Query: 182 MGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
           +G+  +  T     V +  FY Y  KY        +PA++P ++ ++ +  A LA+  +G
Sbjct: 119 LGNDDVRTTLPGEVVKEVAFYDYNAKYIDNTIQMAIPAEVPKEVMQKAREYAKLAYTMLG 178

Query: 240 CRGISRSDFLFDPLSRKVFWLE 261
             G+SR DF       ++F  E
Sbjct: 179 GSGLSRCDFFLTNK-NELFLNE 199


>gi|291286723|ref|YP_003503539.1| D-alanine--D-alanine ligase [Denitrovibrio acetiphilus DSM 12809]
 gi|290883883|gb|ADD67583.1| D-alanine--D-alanine ligase [Denitrovibrio acetiphilus DSM 12809]
          Length = 336

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 81/310 (26%), Positives = 132/310 (42%), Gaps = 21/310 (6%)

Query: 7   GISSEREVSLSSGK---ACASALEDAGFKVSQIDVDRSVGLVLAHLK-PDLAFNVLHGNF 62
           G S E      S +   A  +AL + G  V +I    ++   LA  K  DL FN+  G +
Sbjct: 21  GFSEEDTAEFDSEETISAIETALCECGHSVERIGNYFALHKKLAAQKSWDLVFNIAEGLY 80

Query: 63  G--EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
           G   + LV  +L+   I YT S  LA +L++ K  +K ++  CGV      +VN      
Sbjct: 81  GMGRESLVPCVLDAYGINYTFSDPLAISLTLHKGMAKHILKGCGVATADFAVVNNLGDID 140

Query: 121 QHLISPPYVIKPLKGGSSLGI---IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
              +  P   KP   G+  GI    ++     +   +       +   +L+E+ ++G E 
Sbjct: 141 SINLGFPLFAKPAAEGTGKGISDRSIVWNSADLKR-VCTELLVRYSQPVLVEKLLEGREF 199

Query: 178 TCGVMGDA----SLDVTEIAVPKSD---FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
           T G++G      S+ V EI     +    YSYE K +  +   +  + +  D       +
Sbjct: 200 TVGIIGSGSEAVSVGVMEILPRNKEGIFVYSYENKENCES--LLDYSLVYGDTADRCADV 257

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP-VSIFPEMAAYAGYSFRELL 289
           A  A++A+GCR   R D   D        +E+N  PG+ P  S  P +   AG S+R+L+
Sbjct: 258 ALRAYRALGCRDAGRVDVRLDG-DGIANVIELNPLPGLHPTHSDLPMIWTKAGMSYRQLI 316

Query: 290 LWMVEDASCL 299
             +   A   
Sbjct: 317 CSIAAKAKAR 326


>gi|300088096|ref|YP_003758618.1| D-alanine--D-alanine ligase [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
 gi|299527829|gb|ADJ26297.1| D-alanine--D-alanine ligase [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
          Length = 330

 Score =  182 bits (463), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 69/299 (23%), Positives = 128/299 (42%), Gaps = 22/299 (7%)

Query: 18  SGKACASALEDAGF--KVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGE---DGLVQAIL 72
           +  A  + L + G   +V  +  D S+            FN+  G  G    +  V   L
Sbjct: 30  TATAVTAMLSELGHQVEVVPLSPDESITGRRELSDAGFVFNLFEGFAGRPETEAAVARAL 89

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKP 132
           E   +P+T     + AL++DK  +  V+   G+      L++     +   +  P ++KP
Sbjct: 90  ENTGLPFTGCPASSLALTLDKPATHLVLGYAGLATPRFQLLDPADT-ADFDLDFPCIVKP 148

Query: 133 LKGGSSLGII---VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS--- 186
               +S  +    V    + + + L + +        L+E++++G E    V+G+ S   
Sbjct: 149 PADDASHALSPESVAAGREELAIALNRIAKRYPDSPALVEEFLNGREFNVTVLGNNSPRL 208

Query: 187 LDVTEI----AVPKSDFYSYELKYSSLNSTHV-----LPAKIPLDIYKEVQRLAFLAHQA 237
           L V+EI            ++  K+S  ++ +       PA +   +  E++  A  A +A
Sbjct: 209 LAVSEIIYTLPTGCPRLLTFAAKWSPDSAYYRHTAVRCPAVLDNSLAAELEHAALTAFRA 268

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            GCRG +R DF  +   R V  LE+N  P ++P +     A  AG ++REL+  +V+ A
Sbjct: 269 TGCRGYARMDFRLNAAGRPV-ILEVNANPDLSPEAGVARQAEAAGMTYRELIDAIVKLA 326


>gi|307352683|ref|YP_003893734.1| type 11 methyltransferase [Methanoplanus petrolearius DSM 11571]
 gi|307155916|gb|ADN35296.1| Methyltransferase type 11 [Methanoplanus petrolearius DSM 11571]
          Length = 635

 Score =  182 bits (463), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 70/298 (23%), Positives = 124/298 (41%), Gaps = 26/298 (8%)

Query: 24  SALEDAG-FKVSQIDVDRSVGLVLAHL--KPDLAFNVLHGNFGEDGL----VQAILELLE 76
            AL + G ++ +  D   S+   L     K D  FN+    F  D      V A LE+L 
Sbjct: 329 EALSELGDYEFTYFDNHSSMLSWLRQSGSKADFIFNLCDEGFLNDPRKELHVPAALEILS 388

Query: 77  IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH-LISPPYVIKPLKG 135
           IPYT       A   DK   + +     +PV  + ++N          I  P ++KP  G
Sbjct: 389 IPYTGGNPQCLAYCYDKSLVRGIAKELDIPVPRAFVINPEDSSFIEFPIHFPVIVKPNFG 448

Query: 136 GSSLGI---IVIKKDQSIPLDLLQSSSWNHG-DQLLIEQYVDGIELTCGVMGD-----AS 186
            SS GI    V +    +   +L+  S++     +L+E+++ G +++ G++G+       
Sbjct: 449 DSSFGITQNSVCRDISELQDAILRLKSFSGDCGTVLVEEFLTGGDISVGIIGNLPDKYEV 508

Query: 187 LDVTEI---AVPKS--DFYSYELKYSSLN---STHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           L V E    ++P+       YE K+   +       +PA +  +  + +          +
Sbjct: 509 LPVIEEDYSSLPRGYPKICGYEAKWDPESPYAGITSIPADLSEEARRFLVASCLKLFGRL 568

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           GCR  +R D+  D  +     LE+N  PG        +MA  A  ++ E+L  +++ A
Sbjct: 569 GCRDYARFDWRID-SNGTPRLLEVNPNPGWCWDGHLAKMAGIAEITYAEMLGMILKAA 625


>gi|7157927|gb|AAF37343.1|AF170804_1 D-alanine:D-alanine ligase [Enterococcus durans]
          Length = 200

 Score =  182 bits (463), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 54/202 (26%), Positives = 99/202 (49%), Gaps = 14/202 (6%)

Query: 71  ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------Q 121
            LE L +PY  +G+L SA +MDK+ +K ++ + GVP  P + V +              +
Sbjct: 1   FLETLNLPYVGAGVLTSACAMDKIMTKYILQAGGVPQVPYVPVLKNQWKENPKKVFDQCE 60

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
             +  P  +KP   GS +GI   +  + +   L   +++ +  + ++EQ ++  E+   V
Sbjct: 61  GSLLYPMFVKPANMGSGVGISKAENREELQNAL--RTAYQYDSRAIVEQGIEAREIEVAV 118

Query: 182 MGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
           +G+  +  T     V    FY Y+ KY +      +PA++P ++Y++ Q  A LA+  +G
Sbjct: 119 LGNEDVRTTLPGEVVKDVAFYDYDAKYINNKIEMQIPAEVPEEVYQKAQEYAKLAYTMLG 178

Query: 240 CRGISRSDFLFDPLSRKVFWLE 261
             G+SR DF       ++F  E
Sbjct: 179 GSGLSRCDFFLTNK-NELFLNE 199


>gi|32265630|ref|NP_859662.1| D-alanyl-alanine synthetase A [Helicobacter hepaticus ATCC 51449]
 gi|39930848|sp|Q7VJW2|DDL_HELHP RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|32261678|gb|AAP76728.1| D-alanine-D-alanine ligase [Helicobacter hepaticus ATCC 51449]
          Length = 350

 Score =  182 bits (463), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 71/315 (22%), Positives = 129/315 (40%), Gaps = 48/315 (15%)

Query: 3   VLMGGISSEREVSLSSGKACASAL---------EDAGFKVSQIDVD-------------- 39
           VL GG+S E E+S+ S  A    L          D+  +   I +D              
Sbjct: 5   VLFGGVSFEHEISIVSAVALKKVLGESIGNFIFLDSSHRFYLIPLDSMKSKLFSSGDYKK 64

Query: 40  ------------RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87
                       +        + P    N++HG  GEDG V A+L+   +P+    I +S
Sbjct: 65  CTEIFLQRGAFVKKTFFGFKPIIPHTLINLIHGADGEDGSVSALLDFYHLPFIGPRIESS 124

Query: 88  ALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147
            +S +K+ +K   +  GV V    ++ R     +H I+ P ++KP + GSS+G+ VI ++
Sbjct: 125 VMSFNKVFTKIFAAQRGVKVLDYEILTRANPHLKH-IAYPIILKPARLGSSIGVSVINEE 183

Query: 148 QSIPLDLLQSSSWNHGDQLLIEQYVDGIE----LTCGVMGDASLDV---TEIAVPKSDFY 200
           + +  D  +  ++ + D ++ E +  G++      C V   +  +          K +  
Sbjct: 184 KEL--DYGRDLAFEYDDTIIAESFKSGVKEYNLAGCRVKNGSQDEYRFSIIEEPSKKELL 241

Query: 201 SYELKYSSLN-STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
            +E KY   + +  VL A I   +  ++Q      ++      + R DF    +  +V+ 
Sbjct: 242 DFERKYLDFSRTAQVLQADISSALVAKLQENFMKLYENAFEGALIRCDFFV--IDDEVYL 299

Query: 260 LEINVQPGMTPVSIF 274
            EIN  PG     +F
Sbjct: 300 NEINPIPGSMANYLF 314


>gi|302341653|ref|YP_003806182.1| D-alanine--D-alanine ligase [Desulfarculus baarsii DSM 2075]
 gi|301638266|gb|ADK83588.1| D-alanine--D-alanine ligase [Desulfarculus baarsii DSM 2075]
          Length = 328

 Score =  182 bits (463), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 76/294 (25%), Positives = 131/294 (44%), Gaps = 16/294 (5%)

Query: 20  KACASALEDAGFKVSQIDVDRSV-GLVLAHLKPDLAFNVLHG--NFGEDGLVQAILELLE 76
            A  +AL   G +  ++     +   +LA  + DL FN+  G   FG +  V A+L+   
Sbjct: 33  AAIEAALTRLGHQPRRVGGLPELMAALLAGQRWDLVFNIAEGLGGFGREAQVPAVLDYHG 92

Query: 77  IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGG 136
             Y  S  L  +L++ K  +K+VV   G+      +++     ++  ++ P   KP+  G
Sbjct: 93  QAYVFSDPLTLSLTLHKAMAKRVVRDLGLATPDFAVIDDVAQLAEVSLAYPLFAKPVAEG 152

Query: 137 SSLGIIVIKK--DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS-------L 187
           +  G+    K  D +    + Q     +G  +L+E ++ G E T GV+G  S       +
Sbjct: 153 TGRGVEAAGKVGDAAALAAVCQRLLARYGQPVLVEHFLPGREFTVGVLGTGSAARAVAVM 212

Query: 188 DVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           +V  +A  +++ YSY  K +         A  P  + +    LA  AH+ +GCR  SR D
Sbjct: 213 EVILLARAEAEVYSYHNKENCEGLVRYELADGP--LAQACAALAVAAHRGLGCRDASRVD 270

Query: 248 FLFDPLSRKVFWLEINVQPGMTP-VSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
              D  + +  ++EIN   G+ P  S  P +   AG  + EL+  +V  A   R
Sbjct: 271 LRCDE-TGRPHFMEINPLAGLCPGHSDLPILCGLAGMGYDELIEAIVASALARR 323


>gi|257459534|ref|ZP_05624643.1| D-alanine--D-alanine ligase [Campylobacter gracilis RM3268]
 gi|257442959|gb|EEV18093.1| D-alanine--D-alanine ligase [Campylobacter gracilis RM3268]
          Length = 343

 Score =  182 bits (463), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 76/331 (22%), Positives = 130/331 (39%), Gaps = 55/331 (16%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAF------ 55
            ++ G  S E EVS+ S  A  +AL+    +    D +R    +         F      
Sbjct: 4   GIVFGAQSYEHEVSIISAIAVKNALKGWDLEFVFCDKNRKFYRIEDKNMRAAYFKQGSYA 63

Query: 56  -----------------------------NVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
                                        N++HG  GEDG + A+ E   IPY    I A
Sbjct: 64  KAKELSIGAGGFFESGMFSKSMLEVGTYINLIHGCDGEDGKMAALFEFFGIPYIGPRIEA 123

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           S LS +K+ +K + +   V   P  +VNR ++      + P ++KP   GSS+GI + K 
Sbjct: 124 SVLSYNKILTKHLAAIANVKTLPYEIVNRTSL---PNFNFPIIVKPAHLGSSIGISIAKN 180

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDVTEIAVPKSDFY-SYE 203
           +      L Q  ++   D  ++E Y + ++     G   D  +  + I  PK + Y +++
Sbjct: 181 ESEFSYALDQ--AFELDDSAIVEPYWENVKEFNLAGAKIDGKIVFSNIEEPKKEGYLNFD 238

Query: 204 LKYSSLN-STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG-ISRSDFLFDPLSRKVFWLE 261
            KY   + S  + PA+    +  +++      + A    G + R DF       +++  E
Sbjct: 239 RKYLDFSRSGAIEPARPGALLEGKMKDAFTRLYNAGSFDGALIRCDFF--EKEGEIYLNE 296

Query: 262 INVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           IN  PG     +F          F E+L  +
Sbjct: 297 INPNPGSLANYLFD--------DFSEVLAAL 319


>gi|268315712|ref|YP_003289431.1| D-alanine--D-alanine ligase [Rhodothermus marinus DSM 4252]
 gi|262333246|gb|ACY47043.1| D-alanine--D-alanine ligase [Rhodothermus marinus DSM 4252]
          Length = 336

 Score =  182 bits (463), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 67/289 (23%), Positives = 127/289 (43%), Gaps = 17/289 (5%)

Query: 22  CASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQA--ILELLEIPY 79
            A+A+   G K  +I     + + L  L+ D   ++  G  G +    A  + E+  IPY
Sbjct: 42  LAAAIRKLGHKPVRIGTAYDLLVELPDLRIDCGISIAEGARGRNREAYAPMLFEMAGIPY 101

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI--SPPYVIKPLKGGS 137
             S  L  +LS+DK  +K +V++ GVP  P            H +    P  +KP   GS
Sbjct: 102 IGSDPLTLSLSLDKAWTKDLVAAAGVPTPPYRTYAGPEDVDPHDLPGPFPLFVKPRYEGS 161

Query: 138 SLGI---IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD---ASLDVTE 191
           S GI     +   +++   + + ++  +  ++++E +++G E T  V+G+     L V +
Sbjct: 162 SKGITAASKVHSLEALREQVARLTA-TYRQEVIVEPFIEGSEFTVAVIGNNPPEPLPVLQ 220

Query: 192 IAVPKS---DFYSYELKYSSLNSTHV--LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRS 246
            AV  +     ++ E +     +         +  ++ + +Q+LA   ++ + CR  +R 
Sbjct: 221 RAVEATTGIGLHALEHRGMKPAAALEAAPYVPLTDELERCLQQLAVRVYEKLQCRDFARL 280

Query: 247 DFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           DF  D    K ++LEIN  P   P   F  +A      + E L  +++ 
Sbjct: 281 DFRVD-REGKPWFLEINPLPTFAPDGTFAILAELMQRPYVEFLAEILQR 328


>gi|317148223|ref|XP_001822597.2| hypothetical protein AOR_1_704134 [Aspergillus oryzae RIB40]
          Length = 375

 Score =  182 bits (462), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 77/344 (22%), Positives = 130/344 (37%), Gaps = 58/344 (16%)

Query: 7   GISSEREVSL---SSGKACASALEDAGFKVSQIDVDRSVGLVLA---HLKPDLAFNVLHG 60
           G S E  V L    +  A A++++  G +V  +   + +   +A   H + DLAF++  G
Sbjct: 23  GYSEEDCVELDKQETIDAIAASIQSNGHRVVCVGDIKELVQRMAREEHKEWDLAFSISEG 82

Query: 61  NFG--EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
             G   +  +  +LE   IP+  S     AL +DK ++K ++   G+P  P  +V     
Sbjct: 83  MHGVGREAQIPGLLEAYHIPHVFSDAATLALCLDKGKTKMILEQFGIPTAPFAVVPASWT 142

Query: 119 DSQHLI--------------SPPYVIKPLKGGSSLGI---IVIKKDQSIPLDLLQSSSWN 161
            +   +              S P  IKP   GSS GI     +     +   +    +  
Sbjct: 143 KADCTLTQLLEKTMHGQKLSSFPLFIKPACEGSSKGIYPSSKVDNFTELERGIQVLQTRF 202

Query: 162 HGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIA--------------------VPKS 197
            G  +LIE ++ G E T  ++G       +  T I                         
Sbjct: 203 PGASILIETFLSGQEYTVSIIGTGKRSRVIGTTHIDWEGLSRQKQQASVAEKGPANTSDG 262

Query: 198 DFYSYELKYSSLNSTHVLPAKI----PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
            F+    K          P +          + V+ LA  A +A+ C  + R D  +   
Sbjct: 263 SFWDVNNKNGPDADE---PERFLNSRDNPNVQAVEDLALQAWRALECCDVGRVDIRY-GA 318

Query: 254 SRKVFWLEINVQPGMTP-VSIFPEMAAYAGYSFRELLLWMVEDA 296
             + + LEIN  PG+ P  SI    A + G S +EL+  +++ A
Sbjct: 319 DNRPYVLEINPLPGLRPDWSILARTAVHEGISHKELIGKVIDSA 362


>gi|84310013|emb|CAI84704.1| D-alanine-D-alanine ligase [Lactobacillus plantarum]
          Length = 225

 Score =  181 bits (461), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 69/225 (30%), Positives = 120/225 (53%), Gaps = 14/225 (6%)

Query: 37  DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRS 96
           D    +  +      D+ + V+HGN GEDG +Q + +LL+ PY  SG+LASA S DK  +
Sbjct: 3   DPLAPIKNLTLAKDIDIFYPVVHGNLGEDGTLQGLFKLLKKPYVGSGVLASAASFDKDIT 62

Query: 97  KQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150
           KQ+++   +     ++V     D       Q  +     IKP   GSS+GI   + +Q  
Sbjct: 63  KQILTHHHIQNTKYVVVTPENRDQMTYAYLQAHVGDHLFIKPANQGSSIGIHKAENEQEY 122

Query: 151 PLDLLQSSSWNHGDQLLIEQYVDGI-ELTCGVMGDASLDVT---EIAVPKSD-FYSYELK 205
              L  +  +++  ++L+E+ +D   E+ C ++G+ +   +    I VPK+D FY Y  K
Sbjct: 123 LDGLADAFKYDY--KILVEESIDNPCEVECSILGNENPKASKLGAIDVPKTDTFYDYNNK 180

Query: 206 YSSLNS-THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
           +   +  T  LP ++P D+ K +Q+++  A +A+G +G++R DFL
Sbjct: 181 FVDASGVTFELPVELPADLTKRIQQMSLDAFKALGLKGMARVDFL 225


>gi|225439600|ref|XP_002265851.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|297735584|emb|CBI18078.3| unnamed protein product [Vitis vinifera]
          Length = 952

 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 81/380 (21%), Positives = 139/380 (36%), Gaps = 81/380 (21%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD--------------------- 39
           + V+ GG S+ER +SL+S ++    ++     VS   +D                     
Sbjct: 79  VGVICGGPSAERGISLNSARSVIDHIQGDDLLVSCYYIDCNLNAYAISPAQVYSNTPTDF 138

Query: 40  -----------RSVGLVLAHLK--PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
                      RS+     HL    D+ F V+HG FGEDG +Q +LE   IP+  +    
Sbjct: 139 DFKLESLAQGFRSLSDFAEHLAASVDIVFPVIHGRFGEDGGIQELLEKSNIPFVGTRSNE 198

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP-----------PYVIKPLKG 135
              + DK  S   +   G    P+ LV     +   L                V+KP + 
Sbjct: 199 CRQAFDKYDSSLELDRQGFVTLPNFLVQGSHSNESELSKWFAENHLDTNSGKVVVKPTRA 258

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM-----GDASLDVT 190
           GSS+G+ V            +  +    D++L+E +++G      ++     G     V 
Sbjct: 259 GSSIGVTVAYGVADSLKKANEIIAEGIDDRVLVEIFLEGGSEFTAIVLDVGSGFDCHPVV 318

Query: 191 EIAV-------------PKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
            +                K   ++Y  KY  +    +  P + P+D+   ++  A L  Q
Sbjct: 319 LLPTEVEIQLHDNADMREKDAIFNYRRKYLPTQQVAYHTPPRFPMDVIGSIREGASLLFQ 378

Query: 237 AIGCRGISRSD-FLF---------------DPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280
            +G    +R D +                    S  V + +IN+  GM   S   + A+ 
Sbjct: 379 RLGLHDFARIDGWFLPSSILIPSASEKKLGRTKSGTVIFTDINLISGMEQTSFLFQQASK 438

Query: 281 AGYSFRELLLWMVEDASCLR 300
            G+S   +L  +++ A CLR
Sbjct: 439 VGFSHSNILRSIIQRA-CLR 457



 Score =  125 bits (314), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 63/328 (19%), Positives = 112/328 (34%), Gaps = 85/328 (25%)

Query: 22  CASALEDAGFKVSQIDVDRSVGLV--------LAHLKPDLAFNVLHGNFGEDGLVQAILE 73
               L+      +  D+     +         LA       F  +HG  GEDG +Q +LE
Sbjct: 598 LMEGLKKQ-HWFTGFDLADEPPVRYSVEQWVKLAKEVQATVFIAVHGGMGEDGTLQFLLE 656

Query: 74  LLEIPYTHSGILASALSMDKMRSKQV---VSSCGVPVCPSILVNRFTMDSQHLISPPY-- 128
              +PYT  G+  S + MDK+ +      +   GV     + +N+  +  + L++ P   
Sbjct: 657 AGGVPYTGPGVETSKICMDKVATSLALNHLEKFGV-----LTINKKVLRKEDLLNAPVHD 711

Query: 129 --------------VIKPLKGGSSLGIIVIKKDQSI------------------------ 150
                          +KP + G S G+  +   + +                        
Sbjct: 712 IWHDLTSKLQSETLCVKPARDGCSTGVARLCCLEDLAVYVKALEECFLRIPSNSLSKAHG 771

Query: 151 -------PLDLLQSSSWNHGDQLLI--------------EQYVDGIELTCGVMGDA---- 185
                  P +LL    +   D++++              E +   +E+T GV+G      
Sbjct: 772 VIEMPSPPPELLIFEPFIETDEIIVSSNAVNDTANRLIWEGHSRWVEVTVGVVGKRGSMH 831

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI---PLDIYKEVQRLAFLAHQAIGCRG 242
           SL  +       D  S E K+      ++ P  +        +  ++   L    +   G
Sbjct: 832 SLTPSVTVKESGDILSLEEKFQGGTGINLTPPPLSIISKAALESCKQRIELIANTLQLEG 891

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTP 270
            SR D   +  S +V  +E+N  PGMTP
Sbjct: 892 FSRIDAFVNVDSGEVLIIEVNTVPGMTP 919



 Score = 39.3 bits (91), Expect = 0.69,   Method: Composition-based stats.
 Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 5/37 (13%)

Query: 3   VLMGGISSEREVSLSSGKAC---ASALEDAGFKVSQI 36
           V+ GG +SER+VSL SG        A  D   +V   
Sbjct: 495 VIFGGDTSERQVSLMSGTNVWLNLQAFNDL--EVIPC 529


>gi|254464679|ref|ZP_05078090.1| D-alanine--D-alanine ligase domain protein [Rhodobacterales
           bacterium Y4I]
 gi|206685587|gb|EDZ46069.1| D-alanine--D-alanine ligase domain protein [Rhodobacterales
           bacterium Y4I]
          Length = 336

 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 81/306 (26%), Positives = 134/306 (43%), Gaps = 19/306 (6%)

Query: 7   GISSEREVSLSSGKACAS---ALEDAGFKVSQIDVDRSVGLVLAH-LKPDLAFNVLHGNF 62
           G+S E      S +  A+   AL   G +  +I   R +   LA   + DL FN+  G  
Sbjct: 17  GLSDEAMAEFDSPETIAAIENALHARGHQTQRIGHVRILAQRLAAGDRWDLVFNIAEGLQ 76

Query: 63  GE--DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
           G   +  V A+LE   IPY+ S  L  AL +DK  +K+VV   G+P  P  ++     DS
Sbjct: 77  GRAREAQVPALLEAFGIPYSFSDPLTQALGLDKAMAKRVVRDAGIPTAPFAVLETPADDS 136

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW--NHGDQLLIEQYVDGIELT 178
              +  P  +KPL  G+  G     K          + S        +L E ++ G E T
Sbjct: 137 GLDLPFPIFLKPLAEGTGKGCEHASKANGADQAAAAARSLRQRFRQPVLAESFLPGREFT 196

Query: 179 CGVMGDAS-------LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
            G++G+ +       +++  +   +++ YS++ K      T V+         +     A
Sbjct: 197 VGILGNGADARVIAVMEILLLDTAEAEIYSFQNKQQWE--TRVIYRLADDAEARAAGAAA 254

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP-VSIFPEMAAYAGYSFRELLL 290
             A+ A+GCR  +R D   D       +LE+N  PG+ P  S  P ++A AG  ++ L+ 
Sbjct: 255 LAAYHALGCRDAARIDLRSDAA-GIPNFLEVNTLPGLHPSHSDLPILSAKAGLDYQGLIG 313

Query: 291 WMVEDA 296
            +++ A
Sbjct: 314 GILDAA 319


>gi|301511265|ref|ZP_07236502.1| D-alanine--D-alanine ligase [Acinetobacter baumannii AB058]
 gi|301597563|ref|ZP_07242571.1| D-alanine--D-alanine ligase [Acinetobacter baumannii AB059]
          Length = 170

 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 50/167 (29%), Positives = 83/167 (49%), Gaps = 4/167 (2%)

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           IKP+  GSS+G+  ++K +     + +++   H   ++ E+++ G E T   +    L V
Sbjct: 1   IKPVHEGSSVGMSKVEKAEDFAAAIEKAT--QHDAVVMAEKWITGREFTISFLNGQPLPV 58

Query: 190 TEIAVP-KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
             +  P    FY YE KY   +  + +P  +     K++Q L   A QA+G  G  R D 
Sbjct: 59  IRLQPPADVAFYDYEAKYQRNDVEYGIPCGLSETEEKKLQALCLRAFQAVGAEGWGRIDA 118

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           + D      + LE+N  PGMT  S+ P+ A   GYSF EL + +++ 
Sbjct: 119 MQDEQGN-FWLLEVNTVPGMTSHSLVPKAAKAVGYSFDELCVAILDQ 164


>gi|116748158|ref|YP_844845.1| D-alanine--D-alanine ligase domain-containing protein
           [Syntrophobacter fumaroxidans MPOB]
 gi|116697222|gb|ABK16410.1| D-alanine--D-alanine ligase [Syntrophobacter fumaroxidans MPOB]
          Length = 326

 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 77/289 (26%), Positives = 128/289 (44%), Gaps = 16/289 (5%)

Query: 21  ACASALEDAGFKVSQIDVDRSVGLVLA-HLKPDLAFNVLHG--NFGEDGLVQAILELLEI 77
           A  SAL D  F+  +I   R++   LA   + DL FN+  G   FG +  + A+L+   I
Sbjct: 34  AIESALRDLKFETDRIGHVRNLVRRLAVGERWDLVFNIAEGLAGFGREAAIPALLDAYGI 93

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGS 137
           PYT S  L  +LS+ K  +K V+ + G+P    +++   +      I  P   KP+  G+
Sbjct: 94  PYTFSDPLVLSLSLHKGMAKNVLRNMGIPTADFVVIQDVSETEAIGIPFPVFAKPVAEGT 153

Query: 138 SLGIIVIKK--DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS-------LD 188
             GI    +   Q   +   +     +   +LIE+++ G E T G++G  +       ++
Sbjct: 154 GKGIDAASRIGTQEELVAKCRQLLEVYRQPVLIEKFLPGREFTVGLVGTGAKTEVVGVME 213

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           V      + D YSY  K           A+    I +   R++  A + +GCR   R D 
Sbjct: 214 VILKDGAERDAYSYSNKEHYERRVEYRLAEGS--IARLAARISVEAWRKLGCRDGGRIDL 271

Query: 249 LFDPLSRKVFWLEINVQPGMTP-VSIFPEMAAYAGYSFRELLLWMVEDA 296
             D  +   F  E+N   G+ P  S  P ++  AG S+ EL+  ++  A
Sbjct: 272 RCDERNVPSFV-ELNPLAGLHPVHSDLPILSRLAGMSYVELIGRIMASA 319


>gi|171318067|ref|ZP_02907237.1| D-alanine--D-alanine ligase [Burkholderia ambifaria MEX-5]
 gi|171096746|gb|EDT41630.1| D-alanine--D-alanine ligase [Burkholderia ambifaria MEX-5]
          Length = 336

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 82/308 (26%), Positives = 138/308 (44%), Gaps = 16/308 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + +L GG SSE   S+++  A     +      + I+ D    L     K D   N+ +G
Sbjct: 20  LGILAGGYSSESHGSITNAHALLPYFQRVCQSAAIIEYDGKPSLATRLAKCDFVLNICYG 79

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119
             GEDG +Q ++  LEIPY+ S +LASA+ MDK   K +V + G       LV+    D 
Sbjct: 80  VGGEDGQIQGLMSSLEIPYSGSPVLASAIGMDKNVFKAMVRNWGFATPNGRLVSSLDPDL 139

Query: 120 --SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
             +Q L   P+V+KPL  G S G++ +    ++ + +      +H    ++E+Y+ G   
Sbjct: 140 TKNQDLGRGPFVVKPLSEGDSEGVVFVDSLDNLAMVINDIPKASHD-HWMVEEYIQGDHG 198

Query: 178 TCGVMGDASL----DVTEIAVPKSD-FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
           T  +  D       D     +P     Y   LKY   N   +    +   + + ++R   
Sbjct: 199 TVSMFRDEDGLHISDAIVFDLPDGHRLYDQALKYRIDNPISIHL--LDPAVGERLEREIS 256

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           + + A+ C G++R D++    S    +LEIN  PG+ P S      +    SF + L   
Sbjct: 257 MMYMALQCEGVTRFDYVIR--SGTPHYLEINTIPGLYPGSNSSRCFSST-MSFEQFLY-- 311

Query: 293 VEDASCLR 300
           +  A+ +R
Sbjct: 312 ISTAANIR 319


>gi|260461867|ref|ZP_05810113.1| D-alanine--D-alanine ligase [Mesorhizobium opportunistum WSM2075]
 gi|319785391|ref|YP_004144867.1| D-alanine--D-alanine ligase [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|259032508|gb|EEW33773.1| D-alanine--D-alanine ligase [Mesorhizobium opportunistum WSM2075]
 gi|317171279|gb|ADV14817.1| D-alanine--D-alanine ligase [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 340

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 70/289 (24%), Positives = 133/289 (46%), Gaps = 17/289 (5%)

Query: 20  KACASALEDAGFKVSQIDVDRSVGLVLAH-LKPD-------LAFNVLHGNFGE--DGLVQ 69
           ++  +AL++ G +    D D+ +   L   + PD       + FN+  G+ GE  +  V 
Sbjct: 32  ESVVAALQEGGHETLICDGDKGLLATLERFMPPDRQSRPSGIVFNLAWGSQGERPEAGVP 91

Query: 70  AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYV 129
           A+LE+  +P T  G L   L+ DK+  K+++   GVP     ++ R   ++   +  P V
Sbjct: 92  AMLEMAGVPCTGPGPLGYGLAFDKVIIKRLIRDRGVPTPNFRVM-RLGTETTGDLRFPLV 150

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           +KP    +S G+ +  +   +   +    +  +    L+E+Y+DG E+T  ++G+  L+V
Sbjct: 151 VKPRYECASFGLQLAHEPAQLRQAVEVIVTL-YAQDALVEEYIDGREITVALLGNRELEV 209

Query: 190 TEIAVPKSDFYSYELK--YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
             + + + DF   E +          + P +I   +   +Q ++        CR  +R D
Sbjct: 210 --LPLVEYDFRDREKRCLTREAKQRRICPGQIGSRLATVLQDISVATFLECQCRDYARVD 267

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              D  S + F LEIN  P +   + +   A  AGY+F  L+  +++ A
Sbjct: 268 LRID-RSGQAFVLEINNMPSLRMRASYVLAARTAGYTFSSLVNRILDVA 315


>gi|317034958|ref|XP_001400807.2| D-alanine--D-alanine ligase [Aspergillus niger CBS 513.88]
          Length = 351

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 84/313 (26%), Positives = 133/313 (42%), Gaps = 35/313 (11%)

Query: 19  GKACASALEDAGFKVSQIDVDRSVGLVLAHLK---PDLAFNVLHGNFG--EDGLVQAILE 73
            +  A+AL++ G +V  +    S+   LAH +    DLAFN   G  G   +G V A+LE
Sbjct: 37  AEHIAAALKNLGHEVVLVPDIHSLVKRLAHGEGSTWDLAFNTTEGLHGLAREGQVPALLE 96

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN------------------- 114
             +IP+T S      L +DK R+K V+    VP  P  +++                   
Sbjct: 97  AYQIPFTFSDAATMTLCLDKGRTKMVLEHFNVPTAPFAVIHFDHTAEKTQVSLDEILSMI 156

Query: 115 RFTMDSQHLIS-PPYVIKPLKGGSSLGIIVIKKDQSIP-LDLLQSSSWNHGDQ---LLIE 169
           R +  S+ L+S  P  +KPL  GSS GI    K +SI  L  + +S  +       +L+E
Sbjct: 157 RMSRHSETLLSQYPLFVKPLAEGSSKGIGATNKIKSIESLCDVVNSLRDSSPSSLGVLVE 216

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           +Y+ G E T G++G    D   + V   + Y       +  +  +              +
Sbjct: 217 KYLPGREFTVGILGTGE-DAWVVGV--DEIYGASADDWAGEADEIKIGW-DDQEADLACQ 272

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKV-FWLEINVQPGMTPV-SIFPEMAAYAGYSFRE 287
            A  A   + CR   R D   D     V   +EIN   G+ P  S  P +A +   S+ E
Sbjct: 273 TALRAWTVLRCRDGGRIDIRMDHSGSPVAHVMEINPLAGLLPHWSQLPMIAEHNNVSYNE 332

Query: 288 LLLWMVEDASCLR 300
           L+ ++++ A   R
Sbjct: 333 LIEYILKSALQRR 345


>gi|311351458|gb|ADP92914.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351460|gb|ADP92915.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351470|gb|ADP92920.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351480|gb|ADP92925.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351488|gb|ADP92929.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351490|gb|ADP92930.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351498|gb|ADP92934.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351568|gb|ADP92969.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351574|gb|ADP92972.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351586|gb|ADP92978.1| D-alanine-D-alanine ligase [Clostridium perfringens]
          Length = 196

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 54/202 (26%), Positives = 105/202 (51%), Gaps = 9/202 (4%)

Query: 66  GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL---VNRFTMDSQH 122
           G VQ++L+ L IP++  G L+SA+ MDK  +K++++   V     ++   V+    +   
Sbjct: 1   GTVQSVLKTLGIPFSGCGPLSSAICMDKDMTKRILAFGNVRTARWVMVSSVDEIDYEKIE 60

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            +  P  IKP  GGSS+   +++  +++   +L++    +  +++IE+Y+ G E+TC ++
Sbjct: 61  NLGYPVFIKPNNGGSSVATTLVESKEAVEDAVLEAL--KYDTEVMIEEYIKGDEITCPII 118

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
               L V  I  PK  F+    KY    +   +  K+  D++KEV+++A   ++ + C  
Sbjct: 119 DGKMLPVLAIK-PKGKFFDIASKYEDGGADEFI-VKLNEDLHKEVEKMALETYKLLKCDV 176

Query: 243 ISRSDFLFDPLSRKVFWLEINV 264
            +R D L        + LE+N 
Sbjct: 177 YARVDMLV--KDNIPYVLEVNT 196


>gi|218200303|gb|EEC82730.1| hypothetical protein OsI_27428 [Oryza sativa Indica Group]
          Length = 946

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 79/381 (20%), Positives = 146/381 (38%), Gaps = 82/381 (21%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALE-----------DAGFKVSQI-----------DV 38
           + ++ GG S ER +SL+S ++    ++           D G     I           D 
Sbjct: 75  VGLVCGGPSPERGISLNSARSVLDHIQGEDLLVTCYYIDCGMNAYAISPAQLYSNTPSDF 134

Query: 39  DRSVGLVLAHLK------------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           D  +  +    +             D+ F V+HG FGEDG +Q +LE   +P+  +    
Sbjct: 135 DFKLESLAQGFQSLFDFAQHLATNVDIVFPVIHGKFGEDGGIQELLEKANVPFVGTPSKN 194

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP-----------PYVIKPLKG 135
             L+ DK  +   +++ G    P+ LV +  +    L                V+KP   
Sbjct: 195 CLLAFDKYNASLELNAQGFLTVPNFLVEKDKLAKSKLEEWFQSINLDKENGKVVVKPTSA 254

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMG----DASLDVT 190
           GSS+G++V               S    D+++IE +++ G E T  V+     + S  V 
Sbjct: 255 GSSIGVVVAYGANDAAEKAEGIISEGIDDKVIIEVFLEGGTEFTAIVVDVGTANNSEPVV 314

Query: 191 E------------IAVPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
                        I + +   ++Y  KY  +    +  P + P ++   +++   +  + 
Sbjct: 315 LLPTEVELQSSSNIDIQEDTIFNYRRKYLPTRQVAYHTPPRFPSEVIDCIRQGVSILFRC 374

Query: 238 IGCRGISRSD--FLFDPLS----------------RKVFWLEINVQPGMTPVSIFPEMAA 279
           +G R  +R D  FL  P++                  V + +IN+  GM   S   + ++
Sbjct: 375 LGLRDFARIDGWFLPTPVTSLPSAENTGKFGNTKYGAVLFTDINLMTGMEQTSFLFQQSS 434

Query: 280 YAGYSFRELLLWMVEDASCLR 300
             G+S   +L  +V+ A C R
Sbjct: 435 KVGFSHSRILRTVVQHA-CSR 454



 Score =  126 bits (318), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 54/284 (19%), Positives = 100/284 (35%), Gaps = 66/284 (23%)

Query: 53  LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV---VSSCGVPVCP 109
           + F  +HG  GEDG +Q++L    +PYT  G +AS   MDK+ +      ++S GV   P
Sbjct: 630 VVFIAVHGGIGEDGTIQSLLGSAGVPYTGPGQIASRTCMDKVATSLAVSHLASYGVHTIP 689

Query: 110 ------SILVNRFTMDSQHLISPP-----YVIKPLKGGSSLGIIVIKKDQSIP-LDLLQS 157
                   ++     D  + +          +KP + G S G+  +   + +        
Sbjct: 690 KDLRATEEILKSSPDDIWNDLKAKLQTETVCVKPARDGCSTGVARLCCPKDLEVYANALE 749

Query: 158 SSWNH-------------------GDQLLIEQYVD------------------------- 173
                                    + L+ E +++                         
Sbjct: 750 RKLQRMPANCLSRAHGVIEMPVSPPESLIFEPFIETDEIIISTKSVDDSTRHLVWKGENK 809

Query: 174 GIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK---IPLDIYKE 226
            +E+T GV+G      SL+ +       D  S E K+      ++ P     +  +  ++
Sbjct: 810 WLEVTVGVVGKRGEMLSLNPSITVKESGDILSLEEKFQGGTGINLTPPPSTIMSEEALQK 869

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270
            +         +G  G SR D   +  + ++  +E+N  PGMTP
Sbjct: 870 CKSCIETLANTLGLEGFSRIDAFVNVQNGEILLIEVNTVPGMTP 913



 Score = 40.1 bits (93), Expect = 0.41,   Method: Composition-based stats.
 Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 2/30 (6%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFK 32
           V+ GG +SER+VSL SG      L   GF 
Sbjct: 492 VIFGGDTSERQVSLMSGTNV--WLNLQGFD 519


>gi|115474235|ref|NP_001060716.1| Os07g0691200 [Oryza sativa Japonica Group]
 gi|33146883|dbj|BAC79881.1| unknown protein [Oryza sativa Japonica Group]
 gi|50509294|dbj|BAD30601.1| unknown protein [Oryza sativa Japonica Group]
 gi|113612252|dbj|BAF22630.1| Os07g0691200 [Oryza sativa Japonica Group]
 gi|222637729|gb|EEE67861.1| hypothetical protein OsJ_25672 [Oryza sativa Japonica Group]
          Length = 946

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 79/381 (20%), Positives = 145/381 (38%), Gaps = 82/381 (21%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALE-----------DAGFKVSQI-----------DV 38
           + ++ GG S ER +SL+S ++    ++           D G     I           D 
Sbjct: 75  VGLVCGGPSPERGISLNSARSVLDHIQGEDLLVTCYYIDCGMNAYAISPAQLYSNTPSDF 134

Query: 39  DRSVGLVLA------------HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           D  +  +                  D+ F V+HG FGEDG +Q +LE   +P+  +    
Sbjct: 135 DFKLESLAQGFQSLFDFAQHLAANVDIVFPVIHGKFGEDGGIQELLEKANVPFVGTPSKN 194

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP-----------PYVIKPLKG 135
             L+ DK  +   +++ G    P+ LV +  +    L                V+KP   
Sbjct: 195 CLLAFDKYNASLELNAQGFLTVPNFLVEKDKLAKSKLEEWFQSINLDKENGKVVVKPTSA 254

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMG----DASLDVT 190
           GSS+G++V               S    D+++IE +++ G E T  V+     + S  V 
Sbjct: 255 GSSIGVVVAYGANDAAEKAEGIISEGIDDKVIIEVFLEGGTEFTAIVVDVGTANNSEPVV 314

Query: 191 E------------IAVPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
                        I + +   ++Y  KY  +    +  P + P ++   +++   +  + 
Sbjct: 315 LLPTEVELQSSSNIDIQEDTIFNYRRKYLPTRQVAYHTPPRFPSEVIDCIRQGVSILFRC 374

Query: 238 IGCRGISRSD--FLFDPLS----------------RKVFWLEINVQPGMTPVSIFPEMAA 279
           +G R  +R D  FL  P++                  V + +IN+  GM   S   + ++
Sbjct: 375 LGLRDFARIDGWFLPTPVTSLPSAENTGKFGNTKYGAVLFTDINLMTGMEQTSFLFQQSS 434

Query: 280 YAGYSFRELLLWMVEDASCLR 300
             G+S   +L  +V+ A C R
Sbjct: 435 KVGFSHSRILRTVVQHA-CSR 454



 Score =  126 bits (318), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 54/284 (19%), Positives = 100/284 (35%), Gaps = 66/284 (23%)

Query: 53  LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV---VSSCGVPVCP 109
           + F  +HG  GEDG +Q++L    +PYT  G +AS   MDK+ +      ++S GV   P
Sbjct: 630 VVFIAVHGGIGEDGTIQSLLGSAGVPYTGPGQIASRTCMDKVATSLAVSHLASYGVHTIP 689

Query: 110 ------SILVNRFTMDSQHLISPP-----YVIKPLKGGSSLGIIVIKKDQSIP-LDLLQS 157
                   ++     D  + +          +KP + G S G+  +   + +        
Sbjct: 690 KDLRATEEILKSSPDDIWNDLKAKLQTETVCVKPARDGCSTGVARLCCPKDLEVYANALE 749

Query: 158 SSWNH-------------------GDQLLIEQYVD------------------------- 173
                                    + L+ E +++                         
Sbjct: 750 RKLQRMPANCLSRAHGVIEMPVSPPESLIFEPFIETDEIIISTKSVDDSTRHLVWKGENK 809

Query: 174 GIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK---IPLDIYKE 226
            +E+T GV+G      SL+ +       D  S E K+      ++ P     +  +  ++
Sbjct: 810 WLEVTVGVVGKRGEMLSLNPSITVKESGDILSLEEKFQGGTGINLTPPPSTIMSEEALQK 869

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270
            +         +G  G SR D   +  + ++  +E+N  PGMTP
Sbjct: 870 CKSCIETLANTLGLEGFSRIDAFVNVQNGEILLIEVNTVPGMTP 913



 Score = 40.1 bits (93), Expect = 0.42,   Method: Composition-based stats.
 Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 2/30 (6%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFK 32
           V+ GG +SER+VSL SG      L   GF 
Sbjct: 492 VIFGGDTSERQVSLMSGTNV--WLNLQGFD 519


>gi|149194598|ref|ZP_01871694.1| D-alanylalanine synthetase [Caminibacter mediatlanticus TB-2]
 gi|149135342|gb|EDM23822.1| D-alanylalanine synthetase [Caminibacter mediatlanticus TB-2]
          Length = 341

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 67/329 (20%), Positives = 122/329 (37%), Gaps = 55/329 (16%)

Query: 2   AVLMGGISSEREVSLSSGKACASALE-------DAGFKVSQIDVD--------------- 39
           A++ GG S E E+S+ S       L        D+      ID D               
Sbjct: 4   ALIFGGSSFEHEISIVSAITIKDKLNIKYFIFLDSNRDFYLIDKDNMKSKYFASGEYKNS 63

Query: 40  -------------RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
                        + +      L  D+  N++HG  GEDG + A+LE  +I      + A
Sbjct: 64  IKLEITKGGFKYKKGLLKKEFFLDFDVVINLIHGRDGEDGKIPAMLEFYKIKAITPNVEA 123

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            ++S +K+ +K       V V    +++      +     P +IKP + GSS+G+ + K 
Sbjct: 124 CSVSYNKVLTKAYAKEMRVNVIEYEIIDS----PKTKFDFPVIIKPARLGSSIGVSIAKN 179

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGI---ELTCGVMGDASLDVTEIAVPKSDFYSYE 203
              +      +  +   D +++E +++GI    L     GD  +      V K +F  ++
Sbjct: 180 QDELNYAFDVAREF--DDLIIVEPFIEGIEEYNLAGCKAGDEWIFSKLEKVEKKEFLDFD 237

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            KY   +   V      L+I ++ +      +  I    + R DF        ++  EIN
Sbjct: 238 KKYMDFSRKEVK-INENLEIKEKFKTEFKKIYNNIFKNALIRCDFFC--KDDIIYLNEIN 294

Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
             PG     +F          F+ ++  +
Sbjct: 295 PIPGSMANYLFD--------DFKNVIDKL 315


>gi|242047420|ref|XP_002461456.1| hypothetical protein SORBIDRAFT_02g002970 [Sorghum bicolor]
 gi|241924833|gb|EER97977.1| hypothetical protein SORBIDRAFT_02g002970 [Sorghum bicolor]
          Length = 945

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 76/381 (19%), Positives = 141/381 (37%), Gaps = 82/381 (21%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR------------------SV 42
           + ++ GG S ER VSL+S ++    ++     V    +D                     
Sbjct: 74  VGLICGGPSGERGVSLNSARSVLDHIQGEDLVVRCYYIDSAMKAFAISPAQLYSNTPSDF 133

Query: 43  GLVLA----------------HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
              L                  +  D+ F V+HG FGEDG +Q +LE   +P+  +    
Sbjct: 134 DFKLESLAQGFDSLSDFAEHLAINVDIVFPVIHGKFGEDGGIQELLEKANVPFVGTPSKE 193

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP-----------PYVIKPLKG 135
              + DK  +   +++ G    P+ LV +  +    L +              ++KP + 
Sbjct: 194 CERAFDKHNASLELNAQGFLTVPNFLVEKDKLAKPELEAWFKTVNLNKENGKVIVKPTRA 253

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMG----DASLDVT 190
           GSS+G++V            +  S    D+++IE +++ G E T  V+     + S  V 
Sbjct: 254 GSSIGVVVAYGVNDAAQKAEEIISEGIDDKVIIEVFLEGGTEFTAIVVDVGTANNSQPVV 313

Query: 191 EIA------------VPKSDFYSYELKYSS-LNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
            +               +   ++Y  KY       +  P + P ++   +++   L  + 
Sbjct: 314 LLPTEVELQYSNSSDTDEDTIFNYRKKYLPSRQVAYHSPPRFPAEVIDCIRQGISLLFRR 373

Query: 238 IGCRGISRSD--FLFDPLS----------------RKVFWLEINVQPGMTPVSIFPEMAA 279
            G    +R D  FL  P++                  V + +IN+  GM   S   + A+
Sbjct: 374 FGLHDYARVDGWFLPSPVASLSSAENSEKFGNTKYGTVLFTDINLISGMEQTSFLFQQAS 433

Query: 280 YAGYSFRELLLWMVEDASCLR 300
             G+S   +L  +V+ A C R
Sbjct: 434 AVGFSHSRILRTVVQHA-CSR 453



 Score =  131 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 69/311 (22%), Positives = 117/311 (37%), Gaps = 69/311 (22%)

Query: 29  AGFK-VSQIDVDRSVGLVLAHLKP--DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
           AGF    +  +  S+   + H+K    + F  +HG  GEDG +Q +LE   +P+T  G +
Sbjct: 602 AGFDIAYEQPIKYSLQQWIDHVKETEAVVFIAVHGGIGEDGTIQTLLESAGVPFTGPGPI 661

Query: 86  ASALSMDKMRSKQV---VSSCGVPVCP-----------SILVNRFTMDSQHLISPPYVIK 131
           AS   +DK+ S      ++S GV   P           S LV+ +      L +    +K
Sbjct: 662 ASRTCIDKVASSLAVDHLASYGVHTIPKDVRATEEVLKSSLVDIWNELKAKLRTETVCVK 721

Query: 132 PLKGGSSLGIIVIKKDQSIP-LDLLQSSSWNH-------------------GDQLLIEQY 171
           P + G S G+  +   + +          + H                    + L+ E +
Sbjct: 722 PARDGCSTGVARLCCPKDLEVYTNALRRKFQHLPANCLSRAHGVIEMPVPPPESLIFEPF 781

Query: 172 V-------------------------DGIELTCGVMGDA----SLDVTEIAVPKSDFYSY 202
           +                         D +E+T GV+G      SL+ +       D  S 
Sbjct: 782 IETDEIIISNKLGNGSARHLVWKGENDWLEITVGVVGKRGEMHSLNPSITVKESGDILSL 841

Query: 203 ELKYSSLNSTHVLPAK---IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
           E K+      ++ P     +  D  +  ++   +   A+G  G SR D   +  S +V  
Sbjct: 842 EEKFQGGTGINLTPPPATIMGEDALQRCKKSIEMMANALGLEGFSRIDAFVNVRSGEVLL 901

Query: 260 LEINVQPGMTP 270
           +E+N  PGMTP
Sbjct: 902 IEVNTVPGMTP 912



 Score = 39.7 bits (92), Expect = 0.50,   Method: Composition-based stats.
 Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 2/30 (6%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFK 32
           V+ GG +SER+VSL SG      L   GF 
Sbjct: 491 VIFGGDTSERQVSLMSGTNV--WLNLQGFD 518


>gi|311351626|gb|ADP92998.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351632|gb|ADP93001.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351638|gb|ADP93004.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351684|gb|ADP93027.1| D-alanine-D-alanine ligase [Clostridium perfringens]
          Length = 196

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 54/202 (26%), Positives = 105/202 (51%), Gaps = 9/202 (4%)

Query: 66  GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL---VNRFTMDSQH 122
           G VQ++L+ L IP++  G L+SA+ MDK  +K++++   V     ++   V+    +   
Sbjct: 1   GTVQSVLKTLGIPFSGCGPLSSAICMDKDMTKRILAFGNVRTARWVMVSSVDEIDYEKIE 60

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            +  P  IKP  GGSS+   +++  +++   +L++    +  +++IE+Y+ G E+TC ++
Sbjct: 61  NLGYPVFIKPNNGGSSVATTLVESKEAVKDAVLEAL--KYDTEVMIEEYIKGDEITCPII 118

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
               L V  I  PK  F+    KY    +   +  K+  D++KEV+++A   ++ + C  
Sbjct: 119 DGKMLPVLAIK-PKGKFFDIASKYEDGGADEFI-VKLNEDLHKEVEKMALETYKLLKCDV 176

Query: 243 ISRSDFLFDPLSRKVFWLEINV 264
            +R D L        + LE+N 
Sbjct: 177 YARVDMLVR--DNVPYVLEVNT 196


>gi|311351436|gb|ADP92903.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351440|gb|ADP92905.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351446|gb|ADP92908.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351502|gb|ADP92936.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351514|gb|ADP92942.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351518|gb|ADP92944.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351544|gb|ADP92957.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351578|gb|ADP92974.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351650|gb|ADP93010.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351688|gb|ADP93029.1| D-alanine-D-alanine ligase [Clostridium perfringens]
          Length = 196

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 53/202 (26%), Positives = 105/202 (51%), Gaps = 9/202 (4%)

Query: 66  GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL---VNRFTMDSQH 122
           G VQ++L+ L IP++  G L+SA+ MDK  +K++++   V     ++   V+    +   
Sbjct: 1   GTVQSVLKTLGIPFSGCGPLSSAICMDKDMTKRILAFGNVRTARWVMVSSVDEIDYEKIE 60

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            +  P  IKP  GGSS+   +++  +++   +L++    +  +++IE+Y+ G E+TC ++
Sbjct: 61  NLGYPVFIKPNNGGSSVATTLVESKEAVKDAVLEAL--KYDTEVMIEEYIKGDEITCPII 118

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
               L V  I  PK  F+    KY    +   +  ++  D++KEV+++A   ++ + C  
Sbjct: 119 DGKMLPVLAIK-PKGKFFDIASKYEDGGADEFI-VELNEDLHKEVEKMALETYKLLKCDV 176

Query: 243 ISRSDFLFDPLSRKVFWLEINV 264
            +R D L        + LE+N 
Sbjct: 177 YARVDMLV--KDNIPYVLEVNT 196


>gi|311351414|gb|ADP92892.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351416|gb|ADP92893.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351420|gb|ADP92895.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351428|gb|ADP92899.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351432|gb|ADP92901.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351434|gb|ADP92902.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351438|gb|ADP92904.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351442|gb|ADP92906.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351444|gb|ADP92907.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351448|gb|ADP92909.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351450|gb|ADP92910.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351454|gb|ADP92912.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351456|gb|ADP92913.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351464|gb|ADP92917.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351466|gb|ADP92918.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351468|gb|ADP92919.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351472|gb|ADP92921.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351474|gb|ADP92922.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351476|gb|ADP92923.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351478|gb|ADP92924.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351482|gb|ADP92926.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351484|gb|ADP92927.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351486|gb|ADP92928.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351492|gb|ADP92931.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351496|gb|ADP92933.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351504|gb|ADP92937.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351506|gb|ADP92938.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351508|gb|ADP92939.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351510|gb|ADP92940.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351512|gb|ADP92941.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351516|gb|ADP92943.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351520|gb|ADP92945.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351522|gb|ADP92946.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351524|gb|ADP92947.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351526|gb|ADP92948.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351528|gb|ADP92949.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351530|gb|ADP92950.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351532|gb|ADP92951.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351534|gb|ADP92952.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351536|gb|ADP92953.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351538|gb|ADP92954.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351540|gb|ADP92955.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351542|gb|ADP92956.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351546|gb|ADP92958.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351548|gb|ADP92959.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351550|gb|ADP92960.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351552|gb|ADP92961.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351554|gb|ADP92962.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351556|gb|ADP92963.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351558|gb|ADP92964.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351560|gb|ADP92965.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351562|gb|ADP92966.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351564|gb|ADP92967.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351566|gb|ADP92968.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351570|gb|ADP92970.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351572|gb|ADP92971.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351576|gb|ADP92973.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351580|gb|ADP92975.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351582|gb|ADP92976.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351584|gb|ADP92977.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351588|gb|ADP92979.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351590|gb|ADP92980.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351594|gb|ADP92982.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351596|gb|ADP92983.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351598|gb|ADP92984.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351604|gb|ADP92987.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351606|gb|ADP92988.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351608|gb|ADP92989.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351614|gb|ADP92992.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351616|gb|ADP92993.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351618|gb|ADP92994.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351620|gb|ADP92995.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351624|gb|ADP92997.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351634|gb|ADP93002.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351636|gb|ADP93003.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351652|gb|ADP93011.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351654|gb|ADP93012.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351656|gb|ADP93013.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351658|gb|ADP93014.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351660|gb|ADP93015.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351662|gb|ADP93016.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351664|gb|ADP93017.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351666|gb|ADP93018.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351668|gb|ADP93019.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351670|gb|ADP93020.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351672|gb|ADP93021.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351674|gb|ADP93022.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351676|gb|ADP93023.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351678|gb|ADP93024.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351680|gb|ADP93025.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351682|gb|ADP93026.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351686|gb|ADP93028.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351690|gb|ADP93030.1| D-alanine-D-alanine ligase [Clostridium perfringens]
          Length = 196

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 54/202 (26%), Positives = 105/202 (51%), Gaps = 9/202 (4%)

Query: 66  GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL---VNRFTMDSQH 122
           G VQ++L+ L IP++  G L+SA+ MDK  +K++++   V     ++   V+    +   
Sbjct: 1   GTVQSVLKTLGIPFSGCGPLSSAICMDKDMTKRILAFGNVRTARWVMVSSVDEIDYEKIE 60

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            +  P  IKP  GGSS+   +++  +++   +L++    +  +++IE+Y+ G E+TC ++
Sbjct: 61  NLGYPVFIKPNNGGSSVATTLVESKEAVKDAVLEAL--KYDTEVMIEEYIKGDEITCPII 118

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
               L V  I  PK  F+    KY    +   +  K+  D++KEV+++A   ++ + C  
Sbjct: 119 DGKMLPVLAIK-PKGKFFDIASKYEDGGADEFI-VKLNEDLHKEVEKMALETYKLLKCDV 176

Query: 243 ISRSDFLFDPLSRKVFWLEINV 264
            +R D L        + LE+N 
Sbjct: 177 YARVDMLV--KDNIPYVLEVNT 196


>gi|311351628|gb|ADP92999.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351630|gb|ADP93000.1| D-alanine-D-alanine ligase [Clostridium perfringens]
          Length = 196

 Score =  180 bits (457), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 55/202 (27%), Positives = 105/202 (51%), Gaps = 9/202 (4%)

Query: 66  GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL---VNRFTMDSQH 122
           G VQ++L+ L IP++  G L+SA+ MDK  +K++++   V     I+   V+    +   
Sbjct: 1   GTVQSVLKTLGIPFSGCGPLSSAICMDKDMTKRILAFGNVRTARWIMVSSVDEIDYEKIE 60

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            +  P  IKP  GGSS+   +++  +++   +L++    +  +++IE+Y+ G E+TC ++
Sbjct: 61  NLGYPVFIKPNNGGSSVATTLVESKEAVKDAVLEAL--KYDTEVMIEEYIKGDEITCPII 118

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
               L V  I  PK  F+    KY    +   +  K+  D++KEV+++A   ++ + C  
Sbjct: 119 DGKMLPVLAIK-PKGKFFDIASKYEDGGADEFI-VKLNEDLHKEVEKMALETYKLLKCDV 176

Query: 243 ISRSDFLFDPLSRKVFWLEINV 264
            +R D L        + LE+N 
Sbjct: 177 YARVDMLV--KDNIPYVLEVNT 196


>gi|7157937|gb|AAF37348.1| D-alanine:D-alanine ligase [Tetragenococcus solitarius]
          Length = 200

 Score =  179 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 51/202 (25%), Positives = 102/202 (50%), Gaps = 14/202 (6%)

Query: 71  ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------Q 121
            LE +++PY  +G++ SA SMDK+ +K ++ +  +P  P + V +              +
Sbjct: 1   FLETIDMPYVGAGVMTSASSMDKIMTKYILHAVDIPQVPYVPVLKSQWKENPKKIFEQCE 60

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
             +  P  +KP   GSS+G+      + +   L++  ++ +  +++IEQ ++  E+   +
Sbjct: 61  GTLLYPMFVKPANMGSSVGMAKANDRKELQEALIE--AYRYDSRVVIEQSIEAREIEVAI 118

Query: 182 MGDASLDVTEIA--VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
           +G+  +  T     V +  FY Y  KY   N    +PA+IP ++ ++ +  A +A+ ++G
Sbjct: 119 LGNEDVRTTLPGEIVKEEAFYDYNSKYIDNNIKMQIPAQIPEEVQQKAREYATIAYTSLG 178

Query: 240 CRGISRSDFLFDPLSRKVFWLE 261
            RG+SR DF       ++F  E
Sbjct: 179 GRGLSRCDFFLTNK-NELFLNE 199


>gi|311351418|gb|ADP92894.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351426|gb|ADP92898.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351452|gb|ADP92911.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351462|gb|ADP92916.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351494|gb|ADP92932.1| D-alanine-D-alanine ligase [Clostridium perfringens]
          Length = 196

 Score =  179 bits (456), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 54/202 (26%), Positives = 105/202 (51%), Gaps = 9/202 (4%)

Query: 66  GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL---VNRFTMDSQH 122
           G VQ++L+ L IP++  G L+SA+ MDK  +K++++   V     ++   V+    +   
Sbjct: 1   GTVQSVLKTLGIPFSGCGPLSSAICMDKDMTKRILAFGNVRTARWVMVSSVDEIDYEKIE 60

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            +  P  IKP  GGSS+   +++  +++   +L++    +  +++IE+Y+ G E+TC ++
Sbjct: 61  NLGYPVFIKPNNGGSSVATTLVESKEAVKDAVLEAL--KYDTEVMIEEYIKGDEITCPII 118

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
               L V  I  PK  F+    KY    +   +  K+  D++KEV+++A   ++ + C  
Sbjct: 119 EGKMLPVLAIK-PKGKFFDIASKYEDGGADEFI-VKLNEDLHKEVEKMALETYKLLKCDV 176

Query: 243 ISRSDFLFDPLSRKVFWLEINV 264
            +R D L        + LE+N 
Sbjct: 177 YARVDMLV--KDNIPYVLEVNT 196


>gi|325981999|ref|YP_004294401.1| D-alanine--D-alanine ligase [Nitrosomonas sp. AL212]
 gi|325531518|gb|ADZ26239.1| D-alanine--D-alanine ligase [Nitrosomonas sp. AL212]
          Length = 361

 Score =  179 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 74/290 (25%), Positives = 124/290 (42%), Gaps = 21/290 (7%)

Query: 20  KACASALEDAGFKVSQIDVDRSVGLVLAHLK--PDLAFNVLHGNFG---EDGLVQAILEL 74
            A A+ALE  G  V  IDV + +   L   K   DL FN   G       + +V    E 
Sbjct: 32  AAVATALERVGADVEVIDVGKDIYHQLEKRKHQIDLVFNNAEGLEEKELREAIVPFFCEH 91

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLK 134
           L IPYT S        MDK  +K++V+  GVP     L+     D    ++ P ++KP  
Sbjct: 92  LGIPYTGSSPKTFINKMDKATAKRIVAYEGVPTAKFQLMVPG--DQLKDLTFPLMVKPYS 149

Query: 135 GGSSLGI---IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
            G+S+GI     +  +  +   +    S       L+E+++ G E T G++G+  L + E
Sbjct: 150 EGTSIGISQKSKVHNEAELTAAIAAVYS-QCDQAALVEEFLPGTEYTIGLIGNYVLPILE 208

Query: 192 I----AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           I               +K         +      D  +   ++A  AH+A+  R  +R D
Sbjct: 209 INFANIPGHPQLRDPHVKSIENPYISHMAW---TDQARNFAKMAIAAHEALEARDYNRMD 265

Query: 248 FLFDPLSRKVFWLEINVQPGMTPV-SIFPEMAAYAGYSFRELLLWMVEDA 296
           F       ++++LE NV PG+ P  +    M  + G + ++++  +V+ A
Sbjct: 266 FRVRE--GQLYFLEANVIPGIHPTDADLTNMCRHVGIAHQDMVALIVDKA 313


>gi|166240878|ref|ZP_02240750.1| Ddl [Paenibacillus larvae subsp. larvae BRL-230010]
          Length = 241

 Score =  179 bits (455), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 61/234 (26%), Positives = 103/234 (44%), Gaps = 15/234 (6%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---------ISP 126
            IPY  +G+LASA+ MDK+  K+V +   +P C      R                 I  
Sbjct: 1   NIPYAGAGVLASAVGMDKVIMKKVFAQEDLPQCVFRHFTRSQWQKDQPFFLMGLEISIGY 60

Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186
           P  IKP   GSS+GI   +    +   +    ++ +  +++IE++V+  E+   V+G+  
Sbjct: 61  PCFIKPANLGSSVGISKARNRDELIKAV--EEAFKYDRKVIIEEFVEAREIEVAVLGNEE 118

Query: 187 LDVTE----IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            +V+     I+   SDFY Y+ KY   NS  V+PA IP +   ++Q       + I    
Sbjct: 119 PEVSVPGEIISSKNSDFYDYKAKYQDGNSIMVIPADIPEETAAQIQEXXIXXFKXIXXSX 178

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +S  DF        +    IN  P  TP    P +   +   + ++L  +++ A
Sbjct: 179 LSXLDFFMRNSXXHIXINXINTXPXFTPFFKDPLLXKXSXXPYFKVLDELIDLA 232


>gi|2245424|gb|AAC16915.1| D-alanine:D-alanine ligase [Streptococcus constellatus]
          Length = 197

 Score =  179 bits (455), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 58/199 (29%), Positives = 102/199 (51%), Gaps = 11/199 (5%)

Query: 71  ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV------NRFTMDSQHLI 124
            LE+L++PY    IL+S+++MDK+ +K+V++S G+P  P + V      +    + +  +
Sbjct: 1   FLEVLKMPYVGCNILSSSVAMDKITTKRVLASAGIPQVPYVAVIEGENIDEKIAEVEANL 60

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
           + P   KP   GSS+GI   +    +   L    ++ +  ++LIEQ V+  E+  G++G+
Sbjct: 61  TYPVFTKPSNMGSSVGISKSENQDELRSAL--ELAFKYDSRVLIEQGVNAREIEVGLLGN 118

Query: 185 ASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
                +     V    FY YE KY     T  +PAK+  D+   +++ A  A  AIG  G
Sbjct: 119 EGAKSSWPGEVVKDVAFYDYEAKYIDNKITMDIPAKLSEDVIVTMRQYAEKAFHAIGGVG 178

Query: 243 ISRSDFLFDPLSRKVFWLE 261
           ++R DF +     ++F  E
Sbjct: 179 LARCDFFYTDK-GEIFLNE 196


>gi|7157939|gb|AAF37349.1|AF170810_1 D-alanine:D-alanine ligase [Enterococcus sulfureus]
          Length = 200

 Score =  179 bits (455), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 52/202 (25%), Positives = 96/202 (47%), Gaps = 14/202 (6%)

Query: 71  ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------Q 121
            LE+L++PY  +G++ SA  MDK+ +K ++ + G+P  P + V                +
Sbjct: 1   FLEVLDMPYIGAGVVTSACDMDKIMTKYILQAAGIPQVPYMPVLEHQWKENPKQVFEQCE 60

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
             +  P  +KP   GSS+GI   +    + L    + ++ +  +++IEQ ++  E+   V
Sbjct: 61  GSLLYPMFVKPANMGSSVGISKAENR--LELQAALAEAYKYDSRVVIEQGIEAREIEVAV 118

Query: 182 MGDASLDVT--EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
           +G+  +  T     V    FY Y  KY   N    +PA++  ++ ++ Q  A  A+  +G
Sbjct: 119 LGNEDVRTTAAGEIVKDVAFYDYNSKYIDNNIEMQIPAQVSDEVQQKAQEYAKKAYIMLG 178

Query: 240 CRGISRSDFLFDPLSRKVFWLE 261
             G+SR DF       ++F  E
Sbjct: 179 GSGLSRCDFFLTSK-NELFLNE 199


>gi|7157929|gb|AAF37344.1|AF170805_1 D-alanine:D-alanine ligase [Enterococcus malodoratus]
          Length = 200

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 54/202 (26%), Positives = 98/202 (48%), Gaps = 14/202 (6%)

Query: 71  ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------Q 121
            LE L++P   +G++ SA +MDK+ +K ++ + G+P  P + V +              +
Sbjct: 1   FLETLDMPDVGAGVVTSACAMDKIMTKYILQAAGIPQVPYVPVLKNQWKENPKQIFDKCE 60

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
             +  P  IKP   GSS+GI   +  + +   L +  ++ +  + L+EQ +D  E+   V
Sbjct: 61  GTLLYPMFIKPANMGSSVGISRAENREELQNALQE--AYRYDSRALVEQGIDAREIEVAV 118

Query: 182 MGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
           +G+  +  T     V +  FY Y  KY        +PA+IP ++ ++ +  A LA+  +G
Sbjct: 119 LGNDDVRTTLPGEVVKEVAFYDYNAKYIDNTIQMAIPAEIPEEVMQKARDYAKLAYTMLG 178

Query: 240 CRGISRSDFLFDPLSRKVFWLE 261
             G+SR DF       ++F  E
Sbjct: 179 GSGLSRCDFFLTNK-NELFLNE 199


>gi|311351424|gb|ADP92897.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351430|gb|ADP92900.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351592|gb|ADP92981.1| D-alanine-D-alanine ligase [Clostridium perfringens]
          Length = 196

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 53/202 (26%), Positives = 105/202 (51%), Gaps = 9/202 (4%)

Query: 66  GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL---VNRFTMDSQH 122
           G VQ++L+ L IP++  G L+SA+ MDK  +K++++   V     ++   V+    +   
Sbjct: 1   GTVQSVLKTLGIPFSGCGPLSSAICMDKDMTKRILAFGNVRTARWVMVSSVDEIDYEKIE 60

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            +  P  IKP  GGSS+   +++  +++   +L++    +  +++IE+Y+ G E+TC ++
Sbjct: 61  NLGYPVFIKPNNGGSSVATTLVESKEAVKDAVLEAL--KYDTEVMIEEYIKGDEITCPII 118

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
               L V  I  PK  F+    KY    +   +  K+  +++KEV+++A   ++ + C  
Sbjct: 119 DGKMLPVLAIK-PKGKFFDIASKYEDGGADEFI-VKLNENLHKEVEKMALETYKLLKCDV 176

Query: 243 ISRSDFLFDPLSRKVFWLEINV 264
            +R D L        + LE+N 
Sbjct: 177 YARVDMLV--KDNIPYVLEVNT 196


>gi|1255021|gb|AAB17901.1| D-alanine:D-alanine ligase [Enterococcus saccharolyticus]
          Length = 200

 Score =  179 bits (454), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 53/202 (26%), Positives = 96/202 (47%), Gaps = 14/202 (6%)

Query: 71  ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------Q 121
            LE + +PY  +G+L SA  MDK+ +K ++ S G+P  P + V +              +
Sbjct: 1   FLETIRMPYVGAGVLTSACGMDKIMTKYILHSAGIPQVPYVPVLKNQWKENPKQIFEQCE 60

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
             +  P  +KP   GSS+GI   +    +   L    ++ + ++ +IEQ ++  E+   +
Sbjct: 61  GSLRYPMFVKPANMGSSVGISKAENRVELQNAL--EEAYKYDNRAVIEQGIEAREIEVAI 118

Query: 182 MGDASLDVTE--IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
           +G+  +  T     V    FY Y  KY   +    +PA++P ++ ++ Q  A LA+  +G
Sbjct: 119 LGNEDVRTTMAGEIVKDVAFYDYNSKYIDNSIVMQIPAQVPDEVQEKAQEYAKLAYTMLG 178

Query: 240 CRGISRSDFLFDPLSRKVFWLE 261
             G+SR DF       ++F  E
Sbjct: 179 GSGLSRCDFFLTNK-NELFLNE 199


>gi|58696727|ref|ZP_00372272.1| D-alanine-D-alanine ligase [Wolbachia endosymbiont of Drosophila
           simulans]
 gi|58537095|gb|EAL60215.1| D-alanine-D-alanine ligase [Wolbachia endosymbiont of Drosophila
           simulans]
          Length = 175

 Score =  179 bits (454), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 66/171 (38%), Positives = 108/171 (63%), Gaps = 3/171 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +A+L GG S ERE+SL SGKA   AL+   +   +IDVD ++   L  + P LAF  LHG
Sbjct: 7   IAILSGGFSCEREISLMSGKAVKKALDSLSYNAIEIDVDSNIAEKLKKINPGLAFIALHG 66

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG +Q +LE+L I YTHSG++ASA++++K+ SK +  S  +      +++R  +  
Sbjct: 67  PYGEDGCIQGLLEILGIKYTHSGVMASAVAINKVMSKHIFRSLNIDTPKGYVISREDVLK 126

Query: 121 QHL-ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            ++ I  PYV+KP+  GSS+G+ +I   +   L+L  +SS    +++++E+
Sbjct: 127 NNIKIDYPYVLKPINEGSSIGVYIIFSHEDY-LELKDNSS-TIMEKMIVEE 175


>gi|311351600|gb|ADP92985.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351602|gb|ADP92986.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351610|gb|ADP92990.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351612|gb|ADP92991.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351622|gb|ADP92996.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351640|gb|ADP93005.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351642|gb|ADP93006.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351644|gb|ADP93007.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351646|gb|ADP93008.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351648|gb|ADP93009.1| D-alanine-D-alanine ligase [Clostridium perfringens]
          Length = 196

 Score =  178 bits (453), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 53/202 (26%), Positives = 104/202 (51%), Gaps = 9/202 (4%)

Query: 66  GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL---VNRFTMDSQH 122
           G VQ++L+ L IP++  G L+SA+ MDK  +K++++   V      +   V+    +   
Sbjct: 1   GTVQSVLKTLGIPFSGCGPLSSAICMDKDMTKRILAFGNVRTARWEMVSSVDEIDYEKIE 60

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            +  P  IKP  GGSS+   +++  +++   +L++    +  +++IE+Y+ G E+TC ++
Sbjct: 61  NLGYPVFIKPNNGGSSVATTLVESKEAVKDAVLEAL--KYDTEVMIEEYIKGDEITCPII 118

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
               L V  I  PK  F+    KY    +   +  ++  D++KEV+++A   ++ + C  
Sbjct: 119 DGKMLPVLAIK-PKGKFFDIASKYEDGGADEFI-VELNEDLHKEVEKMALETYKLLKCDV 176

Query: 243 ISRSDFLFDPLSRKVFWLEINV 264
            +R D L        + LE+N 
Sbjct: 177 YARVDMLVR--DNIPYVLEVNT 196


>gi|311351422|gb|ADP92896.1| D-alanine-D-alanine ligase [Clostridium perfringens]
          Length = 196

 Score =  178 bits (453), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 54/202 (26%), Positives = 104/202 (51%), Gaps = 9/202 (4%)

Query: 66  GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL---VNRFTMDSQH 122
           G VQ++L+ L IP++  G L+SA+ MDK  +K++++   V      +   V+    +   
Sbjct: 1   GTVQSVLKTLGIPFSGCGPLSSAICMDKDMTKRILAFGNVRTARWEMVSSVDEIDYEKIE 60

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            +  P  IKP  GGSS+   +++  +++   +L++    +  +++IE+Y+ G E+TC ++
Sbjct: 61  NLGYPVFIKPNNGGSSVATTLVESKEAVKDAVLEAL--KYDTEVMIEEYIKGDEITCPII 118

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
               L V  I  PK  F+    KY    +   +  K+  D++KEV+++A   ++ + C  
Sbjct: 119 DGKMLPVLAIK-PKGKFFDIASKYEDGGADEFI-VKLNEDLHKEVEKMALETYKLLKCDV 176

Query: 243 ISRSDFLFDPLSRKVFWLEINV 264
            +R D L        + LE+N 
Sbjct: 177 YARVDMLV--KDNIPYVLEVNT 196


>gi|311351500|gb|ADP92935.1| D-alanine-D-alanine ligase [Clostridium perfringens]
          Length = 196

 Score =  178 bits (453), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 54/202 (26%), Positives = 105/202 (51%), Gaps = 9/202 (4%)

Query: 66  GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL---VNRFTMDSQH 122
           G VQ++L+ L IP++  G L+SA+ MDK  +K++++   V     ++   V+    +   
Sbjct: 1   GTVQSVLKTLGIPFSGCGPLSSAICMDKDMTKRILAFGNVRTARWVMVSSVDEIDYEKIE 60

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            +  P  IKP  GGSS+   +++  +++   +L++    +  +++IE+Y+ G E+TC ++
Sbjct: 61  NLCYPVFIKPNNGGSSVATTLVESKEAVKDAVLEAL--KYDTEVMIEEYIKGDEITCPII 118

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
               L V  I  PK  F+    KY    +   +  K+  D++KEV+++A   ++ + C  
Sbjct: 119 DGKMLPVLAIK-PKGKFFDIASKYEDGGADEFI-VKLNEDLHKEVEKMALETYKLLKCDV 176

Query: 243 ISRSDFLFDPLSRKVFWLEINV 264
            +R D L        + LE+N 
Sbjct: 177 YARVDMLV--KDNIPYVLEVNT 196


>gi|6403498|gb|AAF07838.1|AC010871_14 unknown protein [Arabidopsis thaliana]
          Length = 515

 Score =  178 bits (452), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 84/379 (22%), Positives = 139/379 (36%), Gaps = 84/379 (22%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKV--SQIDVD------------------- 39
           + ++ GG S+ER +SL+S ++    ++  G  V    ID D                   
Sbjct: 80  VGLICGGPSAERGISLNSARSVLDHIQGDGINVSCYYIDPDLKAFAISSAQVYSNTPSDF 139

Query: 40  -----------RSVGLVLAHL--KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
                       S+  +  HL    D+ F V+HG FGEDG +Q +LE   IP+  +G   
Sbjct: 140 DFKLESLAQGFSSLSELAEHLVSAVDIVFPVIHGRFGEDGGIQELLESHNIPFVGTGSRE 199

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVN-----------RFTMDSQHLISPPYVIKPLKG 135
              + DK  +   +   G    P+ LV             FT +   L     V+KP K 
Sbjct: 200 CFRAFDKYEASLELKELGFMTVPNYLVQGTGVDKSEIALWFTDNQLDLEMGKVVVKPAKA 259

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAV 194
           GSS+G+ V            +       D++++E ++ D  E T  V+   S  V    V
Sbjct: 260 GSSIGVKVAFGVNDSIKKATELILEGIDDRVVVEVFIEDAYEFTAIVLDVGSGSVCHPVV 319

Query: 195 ----------------PKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
                            ++  + Y  KY  +   T+  P + P+ + K ++  A L  Q 
Sbjct: 320 LMPTEVQLQFHGIGDPKENAIFDYRRKYLPTQQVTYHTPPRFPIHVIKSIREEASLIFQK 379

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA----------------YA 281
           +G R  +R D  +   +  +     +   GM   S   + A+                  
Sbjct: 380 LGLRDFARIDGWYLAPNSNL----SSPISGMEQTSFLFQQASKVIKDIVTLMIIDSYIQV 435

Query: 282 GYSFRELLLWMVEDASCLR 300
           G+S   +L  +V  A C R
Sbjct: 436 GFSHSNILRTIVHRA-CSR 453



 Score = 37.8 bits (87), Expect = 2.0,   Method: Composition-based stats.
 Identities = 11/26 (42%), Positives = 16/26 (61%)

Query: 3   VLMGGISSEREVSLSSGKACASALED 28
           V+ GG +SER+VS+ SG      L+ 
Sbjct: 485 VIFGGDTSERQVSVMSGTNVWVNLQR 510


>gi|256829554|ref|YP_003158282.1| D-alanine--D-alanine ligase domain-containing protein
           [Desulfomicrobium baculatum DSM 4028]
 gi|256578730|gb|ACU89866.1| D-alanine--D-alanine ligase domain protein [Desulfomicrobium
           baculatum DSM 4028]
          Length = 331

 Score =  178 bits (452), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 75/297 (25%), Positives = 121/297 (40%), Gaps = 14/297 (4%)

Query: 15  SLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH-LKPDLAFNVLHGNFG--EDGLVQAI 71
           S  + +A   AL   G +V  +     +   LA   + D+ FN   G  G   +  V A+
Sbjct: 28  SPVTVEAIRQALASQGHEVELVGGVMPLARALADGRRWDMVFNFAEGMRGLAREAQVPAL 87

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIK 131
           L+  +IPYT SG    ALS+ K  +  V+ + GVP     +VN         +  P  +K
Sbjct: 88  LDAWDIPYTFSGPEVLALSLHKGWTNAVLRAHGVPTADFRIVNSVEEVDAIDLPFPLFVK 147

Query: 132 PLKGGSSLGI---IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA--- 185
           P+  GSS G+    ++K    +  D+            L+E ++ G E T G++G     
Sbjct: 148 PVAEGSSKGVSDKSLVKDRWELR-DICAHVLKTFHQPALVETFLPGREFTVGILGSGPQC 206

Query: 186 -SLDVTEI-AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
             L V E+ A  + D  +Y            L      D   +   +A  A QA+GC   
Sbjct: 207 RVLGVMEVLATARGDACAYTYANKQEWRERALYELAGDDRAAQAAEVARAAWQALGCLDA 266

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTP-VSIFPEMAAYAGYSFRELLLWMVEDASCL 299
            R D   D    +  ++E+N   G+ P  S  P +    G  + EL+  +++ A   
Sbjct: 267 GRIDVRLDAQ-GQPRFIEVNPLAGLNPESSDLPILCGKIGLGYDELIASIMDSAMAR 322


>gi|303273608|ref|XP_003056164.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226462248|gb|EEH59540.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 918

 Score =  178 bits (452), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 78/396 (19%), Positives = 142/396 (35%), Gaps = 97/396 (24%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------P 51
           +AVL GG S+ER VSL+S ++    L  +GF V    +D+ +     + +          
Sbjct: 32  VAVLCGGPSAERGVSLNSARSILDNLHGSGFTVDCYYIDQGLRAFPINARQIYCNTPSDF 91

Query: 52  DL--------------------------AFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
           D                           AF  LHG FGEDG++Q  LE   +P+  +  +
Sbjct: 92  DFKLRGKRREGIRDPVALASRLRAQGAIAFPALHGAFGEDGVLQNALEEAGVPFVGTDAM 151

Query: 86  ASALSMDKMRSKQVVSSCGVPVC------------PSILVNRFTMDSQHLISPP-YVIKP 132
            +  + DK    + +++ G P                  + R+             V+KP
Sbjct: 152 HACRAFDKFTCSRTLAAEGFPTLSMTLLEPSSNMDYHATLLRWFATCNLDPEFDYVVVKP 211

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVMGDASLDVTE 191
            +GGSS+G+ + +          +  +     ++++E+Y   G+E T  V+G  +  V  
Sbjct: 212 ARGGSSIGVSIARGVVQASDLASKLFTSGTDSRVVVERYAGSGVEFTITVLGTTNEPVPL 271

Query: 192 IAV------------------------PKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKE 226
           I                           + +F+ +  KY  +++  +  PA+       +
Sbjct: 272 IPTEIEILADVEKGLKTSRKVGPAARLEQFNFFDFRRKYLPTMHVVYHTPARFGTGAIDK 331

Query: 227 VQRLAFLAHQAIGCRGISRSD-FLF---------------------DPLSRKVFWLEINV 264
           ++R A    + +G R  +R D F                               + ++NV
Sbjct: 332 IRRNAASIFKLLGLRDYARLDGFFMPNGDVAVQWCKEELVLGDSESLTTDGVPVFTDVNV 391

Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
             GM   S   + AA  G +   +L  ++  A C R
Sbjct: 392 VCGMEQSSFLFQQAAEIGMTHSAVLRHVLCSA-CHR 426



 Score =  111 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 59/306 (19%), Positives = 96/306 (31%), Gaps = 78/306 (25%)

Query: 53  LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRS---KQVVSSCGV---- 105
           + FN +HG  GEDG +QA+       YT SG  +S L  DK  +    + +S  G+    
Sbjct: 591 IIFNAVHGGCGEDGTLQALFTEARASYTGSGPASSRLCFDKAATGGELKPLSYFGILSYN 650

Query: 106 ------PVCP------SILVNRFTMDSQHLISPP--YVIKPLKGGSSLGIIVIKKDQSIP 151
                  V        SI+   +      +   P    IKP   G S G+  +K    + 
Sbjct: 651 RLLVSSRVLEVFLGQTSIVATIWDAFVATVGPAPFGLCIKPNSDGCSTGVARLKGSDDLL 710

Query: 152 L-----------------------DLLQSSSWNHGDQLLIEQYVD--------------- 173
                                     +           L+E ++                
Sbjct: 711 AYATAIFNHQSHLHPGDLPMASGIAHIIELPEEIPSNFLVEPFIPTATVCITRCRSGIEE 770

Query: 174 ------------GIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
                        IE+T GV+G      +L  +   V   D  S E K+ +    ++ P 
Sbjct: 771 LYFEDVAFSTTRWIEVTVGVVGTKGHTAALHPSLTIVGHGDVLSLEEKFQAGTGVNITPL 830

Query: 218 K---IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274
                  ++    +     A  A+   G +R D      +  V  +E N  PG+TP ++ 
Sbjct: 831 PATIASAEVLSAARTRIAFAANALDIEGFARIDLFLHVDTGDVMIVEANTVPGLTPSTVL 890

Query: 275 PEMAAY 280
              A  
Sbjct: 891 FHQALA 896



 Score = 40.1 bits (93), Expect = 0.37,   Method: Composition-based stats.
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALED-AGFKVSQI 36
           + VL GG +SER+VSL SG      L +   + V  +
Sbjct: 463 VYVLFGGGTSERQVSLMSGTNVWLRLREYPEYDVEPL 499


>gi|317154408|ref|YP_004122456.1| D-alanine--D-alanine ligase [Desulfovibrio aespoeensis Aspo-2]
 gi|316944659|gb|ADU63710.1| D-alanine--D-alanine ligase [Desulfovibrio aespoeensis Aspo-2]
          Length = 334

 Score =  178 bits (452), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 73/314 (23%), Positives = 129/314 (41%), Gaps = 27/314 (8%)

Query: 7   GISSER------EVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH-LKPDLAFNVLH 59
           G+S E       EV+++  +   + L   G  V +I    ++   LA   + D+ FN+  
Sbjct: 17  GLSCEEAAEFDSEVTIAGIERVLTGL---GHAVDRIGNISALVARLAAGDRWDMVFNIAE 73

Query: 60  G--NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117
           G    G +  V A+L+   IPY+ SG    AL++ K  +  VV S GV      +V R  
Sbjct: 74  GLHGLGREAQVPALLDAWSIPYSFSGPELMALTLHKGWTNAVVRSLGVATADFAVVTRIE 133

Query: 118 MDSQHLISPPYVIKPLKGGSSLGI---IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
                 +  P  +KP+  G+S GI    +++   ++  ++            L+E Y+ G
Sbjct: 134 DVDSMSLPFPLFVKPVAEGTSKGITERSLVRDPAALR-EVCADLLTTFRQPALVETYLPG 192

Query: 175 IELTCGVMG-------DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227
            E T G++G          ++V  +    +  Y+YE K     +  V    +  ++    
Sbjct: 193 REFTVGLLGSGDESRVAGVIEVRAVGKGDATAYTYENKQDW--TRRVAYELVDDEVAMAA 250

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP-VSIFPEMAAYAGYSFR 286
             LA  A + +GC    R D           ++E+N  PG+ P  S  P +    G S+ 
Sbjct: 251 ASLALKAWRGLGCLDAGRIDVRL-GADGAPRFIEVNPLPGLNPESSDLPILWRLGGKSYD 309

Query: 287 ELLLWMVEDASCLR 300
            L+  +   A+  +
Sbjct: 310 ALIREIFHSAARRK 323


>gi|307750582|gb|ADN92458.1| truncated D-alanine D-alanine ligase [Enterococcus faecium]
          Length = 230

 Score =  178 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 55/228 (24%), Positives = 99/228 (43%), Gaps = 48/228 (21%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV-------------LA 47
           + +L GG S+E EVS+ S  +  +A+    ++V  + + +    V             + 
Sbjct: 3   ITLLYGGRSAEHEVSILSAFSVLNAIYYNYYQVQLVFITKEGQWVKGPLLTEKPASKDVL 62

Query: 48  HLKPD------------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
           HL  D                        + F VLHG  GEDG +Q  LE L +PY  +G
Sbjct: 63  HLSWDPSGQTEEGFTGKVINPGEIKEEGAIVFPVLHGPNGEDGTIQGFLETLNMPYVGAG 122

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLK 134
           +L SA +MDK+ +K ++ + GVP  P + V +              +  +  P  +KP  
Sbjct: 123 VLTSACAMDKIMTKYILQAAGVPQVPYVPVLKNQWKENPKKVFDQCEGSLLYPMFVKPAN 182

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            GSS+GI   +  + +   L  ++++ +  + ++EQ ++  E     +
Sbjct: 183 MGSSVGITKAENREELQNAL--ATAYQYDSRAIVEQGIEARENRSCCI 228


>gi|301167561|emb|CBW27144.1| putative D-alanine--D-alanine ligase [Bacteriovorax marinus SJ]
          Length = 336

 Score =  178 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 61/297 (20%), Positives = 128/297 (43%), Gaps = 24/297 (8%)

Query: 22  CASALEDAGFKVSQIDVDRSVGLV---LAHLKPDLAFNVLHGNFGE---DGLVQAILELL 75
              AL + G KV    V   + L+   +   KP + FN+L    GE   D  V + LELL
Sbjct: 35  VIKALNNLGHKVEICGVISDLKLIKNAIDKFKPTVIFNLLEEFDGEVLFDQNVVSYLELL 94

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR-FTMDSQHLISPPYVIKPLK 134
            +PYT        L+ DK  +K+++    +      +  +   + +   +  P ++K L 
Sbjct: 95  RVPYTGCNPRGLMLARDKALAKKILLFHRIKTPHFQVFPKNRKVKTSKHLKYPLIVKCLT 154

Query: 135 GGSSLGI---IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD---ASLD 188
             +SL I    ++  ++ +   +   +    G   ++E++++G E   GVMG+    +L 
Sbjct: 155 EEASLAIAKASIVYNEEKLKERVKYINQ-KIGVDAIVEEFIEGREFYVGVMGNYKTQTLP 213

Query: 189 VTE-----IAVPKSDFYS----YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
           V E     +  P+ + YS    +  KY          A +  ++  +++ +    ++ + 
Sbjct: 214 VWELKFENVEKPEKELYSNRAKWNNKYRDRKGIKTEAATLSPELELKIKNICKKVYKHLN 273

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             G +R D   +P   +V+ +E+N  P +         A ++  ++ +L+  +++ A
Sbjct: 274 LNGYARVDLRMNPA-GEVYVIEVNPNPNIAREDELASSALHSKVNYEQLITKILKLA 329


>gi|300863798|ref|ZP_07108724.1| D-alanine--D-alanine ligase domain protein [Oscillatoria sp. PCC
           6506]
 gi|300338199|emb|CBN53870.1| D-alanine--D-alanine ligase domain protein [Oscillatoria sp. PCC
           6506]
          Length = 329

 Score =  178 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 74/289 (25%), Positives = 129/289 (44%), Gaps = 14/289 (4%)

Query: 21  ACASALEDAGFKVSQIDVDRSVGLVL-AHLKPDLAFNVLHGNFGE--DGLVQAILELLEI 77
              + L   G KV +I   R + L L    + DL FN+  G  G   +  V A+ EL   
Sbjct: 36  GLENTLCGLGHKVERIGNGRELALRLVKGDRWDLIFNIAEGLKGRSREAQVPAVCELFAQ 95

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGS 137
           PYT S  L  AL++DK  +K+VV   G+P  P  +V+         +  P  +KP+  GS
Sbjct: 96  PYTFSDPLTCALTLDKAMTKRVVRDFGLPTAPFEVVSTSEQAIAISLPMPLFLKPIAEGS 155

Query: 138 SLGIIVIK--KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA-------SLD 188
           S GI      K+    + + Q+        +L+E ++ G E+  G++G+         ++
Sbjct: 156 SKGITEKSLVKESQDLVAVYQALQEEFQQPVLVETFLPGKEIAVGIVGNGNQARVIAVME 215

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           +      +   Y+   K   L          P  +  + ++LA   + ++GC   +R + 
Sbjct: 216 IIFTKKAEIAAYTALNKDKYLERVSYRLLTDPEPLAAQARQLALDVYHSLGCLDAARVEL 275

Query: 249 LFDPLSRKVFWLEINVQPGMTPV-SIFPEMAAYAGYSFRELLLWMVEDA 296
             D ++ ++ +LE+N   G+ P+ S    MA  AG  + +L+  +VE A
Sbjct: 276 RGD-VTGELQFLEVNPLSGIHPINSDLVIMARLAGIEYAQLIGEIVESA 323


>gi|315427950|dbj|BAJ49541.1| D-alanine-D-alanine ligase [Candidatus Caldiarchaeum subterraneum]
          Length = 640

 Score =  178 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 61/296 (20%), Positives = 121/296 (40%), Gaps = 25/296 (8%)

Query: 20  KACASALEDAGFKVSQIDVDRSVGLVLAHLK--PDLAFNVLHGNFGED----GLVQAILE 73
           K     + +  +K   +D    +   L   +    + FN+    F  +      V A+LE
Sbjct: 323 KNALHGIRE--YKFIFVDDHSKMIEFLTKNRAGIHMVFNLCDDGFKNNPEMEAHVPALLE 380

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPL 133
           +L + YT +G     L  DK + K + SS G+PV    ++      S   +  P ++KP 
Sbjct: 381 MLGVRYTGAGPRCLTLCYDKAKVKAIASSMGIPVPHHTILFNGDNGSLKHVKYPVIVKPN 440

Query: 134 KGGSSLGII---VIKKDQSIPLDLLQ-SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
            G +S GI    V++    +   + +    W +   +L+E++V+G++LT  ++G+   DV
Sbjct: 441 YGDNSWGITERNVVRNRDELISAIKEIRVKWGYSGPILVEEFVEGMDLTVSILGNPPHDV 500

Query: 190 TEIAVPKS---------DFYSYELKYSSLNSTHV---LPAKIPLDIYKEVQRLAFLAHQA 237
               + +             +Y  K+   +       +P ++P  + +++          
Sbjct: 501 VLPILTEDYSKLPDGLPKILTYAAKWCPDSPYRFVNSIPVELPHRLREQLIWWCRKLFAM 560

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           + CR  +R D+           LE+N  PG      F +     G+S+R +L  ++
Sbjct: 561 LECRDYARFDWRL-GSDGVPRLLEVNPNPGWVWDGHFAKACLVLGWSYRRMLHEIL 615


>gi|1255017|gb|AAB17899.1| D-alanine:D-alanine ligase [Enterococcus dispar]
          Length = 200

 Score =  177 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 52/202 (25%), Positives = 96/202 (47%), Gaps = 14/202 (6%)

Query: 71  ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------Q 121
            LE +++PY  +G+L SA  MDK+ +K ++ + G+P  P + V +              +
Sbjct: 1   FLETIDMPYIGAGVLTSACGMDKIMTKYILQAAGIPQVPYVPVLKNLWKENPKQIFEQCE 60

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
             +  P  +KP   GSS+GI   +  + +   L +  ++ +  + ++EQ ++  E+   +
Sbjct: 61  GTLLYPMFVKPANMGSSVGISKAENREELQNALQE--AYKYDTRAIVEQGIERGEIEVAI 118

Query: 182 MGDASLDVTEIA--VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
           +G+  +  T     V    FY Y  KY        +PA+IP D+ ++ Q  A  A+  +G
Sbjct: 119 LGNEDVRTTLPGEIVKDVAFYDYNSKYIDNQIIMQIPAEIPEDVQQKAQDFAKKAYVMLG 178

Query: 240 CRGISRSDFLFDPLSRKVFWLE 261
             G+SR DF       ++F  E
Sbjct: 179 GSGLSRCDFFLTNK-NELFLNE 199


>gi|7157925|gb|AAF37342.1|AF170803_1 D-alanine:D-alanine ligase [Enterococcus columbae]
          Length = 199

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 57/202 (28%), Positives = 98/202 (48%), Gaps = 15/202 (7%)

Query: 71  ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTMDSQHLIS--- 125
            LE L++PY  +G+LASA  MDK+ +K V+ + G+P  P   +L  ++    Q +     
Sbjct: 1   FLETLKMPYVGTGVLASACGMDKIMTKYVLQAGGIPQVPYMPVLYTQWKEQPQQIFEQCE 60

Query: 126 ----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
                P  +KP   GSS+GI   +  + +   L +     +  +++IEQ ++  E+   V
Sbjct: 61  GSLLYPMFVKPANMGSSVGISKAENREELDNALKELL---YDTRVIIEQGIEAREIEVAV 117

Query: 182 MGDASL--DVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
           +G+  +   V    V    FY Y  KY     T  +PA++P ++ ++ Q  A  A+  +G
Sbjct: 118 LGNEDVRTTVAGEIVKDVAFYDYNSKYIDNKITMQIPAEVPQEVQEKAQEYAKKAYTMLG 177

Query: 240 CRGISRSDFLFDPLSRKVFWLE 261
             G+SR DF       ++F  E
Sbjct: 178 GSGLSRCDFFLTNK-NELFLNE 198


>gi|57790304|gb|AAW56079.1| vancomycin resistance protein A [Enterococcus faecium]
          Length = 205

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 55/195 (28%), Positives = 95/195 (48%), Gaps = 9/195 (4%)

Query: 51  PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            D+AF+ LHG  GEDG +Q + EL  IP+    I +SA+ MDK  +  V  + G+     
Sbjct: 13  VDVAFSALHGKSGEDGSIQGLFELSGIPFVGCDIQSSAICMDKSLTYIVAKNAGIATPAF 72

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            ++N+         + P  +KP + GSS G+  +     +  D    S+  +  ++LIEQ
Sbjct: 73  WVINKDDRPVAATFTYPVFVKPARSGSSFGVKKVNSADEL--DYAIESARQYDSKILIEQ 130

Query: 171 YVDGIELTCGVMGD-ASLDVTEIAVPKSDFYSY------ELKYSSLNSTHVLPAKIPLDI 223
            V G E+ C V+G+ A+L V E+   +  +  +      E +  S N+   +PA +  + 
Sbjct: 131 AVSGCEVGCAVLGNSAALAVGEVDQIRLQYGIFRIHQEVEPEKGSENAVITVPADLSAEE 190

Query: 224 YKEVQRLAFLAHQAI 238
              +Q  A   ++A+
Sbjct: 191 RGRIQETAKKIYKAL 205


>gi|317150914|ref|XP_003190466.1| D-alanine--D-alanine ligase [Aspergillus oryzae RIB40]
          Length = 361

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 75/334 (22%), Positives = 131/334 (39%), Gaps = 40/334 (11%)

Query: 7   GISSEREVSL-SSGK--ACASALEDAGFKVSQIDVDRSVGLVLAH---LKPDLAFNVLHG 60
           G S E   +L  SG+  +  + L + G  V+ +   +S+   LA       DLAFN+  G
Sbjct: 23  GYSEEECAALPHSGETGSVLTTLRELGHHVTLVPGVQSLVKHLAAGTYKDWDLAFNIAQG 82

Query: 61  NFG--EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
             G   +  V A+L+  ++ YT S     AL  +K+ +K +++   +P  P  +++R   
Sbjct: 83  FHGSSREAQVPALLDAYQLLYTFSDAATMALCQNKVHTKIILAHHNIPTAPFSVISRKDQ 142

Query: 119 D------SQHLISPPYVIKPLKGGSSLGI---IVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
           +         L   P  +KP+  GS  GI     + +   +   + +  S      +L+E
Sbjct: 143 NLRLENLDNMLSHYPLFLKPVIEGSPKGIDRFNKVTEPAELESAVKKLRSIFPDQDILVE 202

Query: 170 QYVDGIELTCGVMGDASLDVTEIAV------------------PKSDFYSYELKYSSLN- 210
            ++ G EL+  ++G                                +F S + K S  N 
Sbjct: 203 PFLSGRELSVSILGTGVQSCVVGVTGFLWQNPFSDRNGENESSSSLEFASRKSKSSDANM 262

Query: 211 -STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF--DPLSRKVFWLEINVQPG 267
                 P  +     K   ++A  A +++GCR   R D  F  D        LE+N   G
Sbjct: 263 LVVRHDPGLMAEPQVKVACQVALDAWRSLGCRDAGRVDIRFSSDEHDAVPNVLELNPISG 322

Query: 268 MTP-VSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           + P  S  P  A   G  ++ LL  +++ A   +
Sbjct: 323 LLPGHSPLPSSAEENGLPYKRLLAAIIQSALTRK 356


>gi|1814244|gb|AAB41852.1| D-Alanine:D-Alanine ligase [Streptococcus gordonii]
          Length = 197

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 58/199 (29%), Positives = 100/199 (50%), Gaps = 11/199 (5%)

Query: 71  ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLI 124
            LE+L++PY    IL+S+L+MDK+ +K+V+ S G+   P + V           + +  +
Sbjct: 1   FLEVLKMPYVGCNILSSSLAMDKITTKRVLESAGIAQVPYVAVVDGEDLEQKIQEIEEKL 60

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
           S P   KP   GSS+GI      + +   L    ++ +  ++L+EQ V   E+  G++G+
Sbjct: 61  SYPVFTKPSNMGSSVGISKSDNQEELRASLDL--AFKYDSRVLVEQGVTAREIEVGLLGN 118

Query: 185 ASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
             +  +     V    FY Y+ KY     T  +PA++P  +   +++ A  A +AIG  G
Sbjct: 119 TDVKSSLPGEVVKDVAFYDYQAKYIDNKITMAIPAQLPEGVVNTMRQNAETAFRAIGGLG 178

Query: 243 ISRSDFLFDPLSRKVFWLE 261
           +SR DF +     +VF  E
Sbjct: 179 LSRCDFFYTE-DGQVFLNE 196


>gi|209162465|gb|ACI39940.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162467|gb|ACI39941.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162469|gb|ACI39942.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162471|gb|ACI39943.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162473|gb|ACI39944.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162475|gb|ACI39945.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162477|gb|ACI39946.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162479|gb|ACI39947.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162481|gb|ACI39948.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162483|gb|ACI39949.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162485|gb|ACI39950.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162487|gb|ACI39951.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162499|gb|ACI39957.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162501|gb|ACI39958.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162505|gb|ACI39960.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162507|gb|ACI39961.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162509|gb|ACI39962.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162511|gb|ACI39963.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162513|gb|ACI39964.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162559|gb|ACI39987.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162563|gb|ACI39989.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162565|gb|ACI39990.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162567|gb|ACI39991.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162569|gb|ACI39992.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162571|gb|ACI39993.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162575|gb|ACI39995.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162577|gb|ACI39996.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162579|gb|ACI39997.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162581|gb|ACI39998.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162585|gb|ACI40000.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162587|gb|ACI40001.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162589|gb|ACI40002.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162591|gb|ACI40003.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162595|gb|ACI40005.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162599|gb|ACI40007.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162601|gb|ACI40008.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162603|gb|ACI40009.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162605|gb|ACI40010.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162607|gb|ACI40011.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162609|gb|ACI40012.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162611|gb|ACI40013.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162639|gb|ACI40027.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162645|gb|ACI40030.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162647|gb|ACI40031.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162649|gb|ACI40032.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162651|gb|ACI40033.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162653|gb|ACI40034.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162655|gb|ACI40035.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162659|gb|ACI40037.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162661|gb|ACI40038.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162663|gb|ACI40039.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162669|gb|ACI40042.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162671|gb|ACI40043.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162673|gb|ACI40044.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162675|gb|ACI40045.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162677|gb|ACI40046.1| D-alanine-D-alanine ligase [Clostridium septicum]
          Length = 184

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 58/188 (30%), Positives = 99/188 (52%), Gaps = 7/188 (3%)

Query: 66  GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI---LVNRFTMDSQH 122
           G VQ++L+ L+IPY+  G L+SAL MDK  +K+++ S  +     +    V     D   
Sbjct: 1   GTVQSVLQTLDIPYSGCGPLSSALCMDKDLTKRILKSNNIRTARWLNVRSVEEIDYDKIE 60

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            +  P  IKP  GGSS+    I K + +   + +   W   ++++IE+++ G E+TC V 
Sbjct: 61  EMKYPVFIKPTNGGSSVATFKITKKEDVEEAVREGLKW--DNEVMIEEFIKGEEITCPVF 118

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
                 V  I  PK+DF+ Y  KYS   +  V+  ++   ++KEV+++A   ++A+ C  
Sbjct: 119 KGEMFPVIAIR-PKTDFFDYTQKYSGDGAEEVI-IELEEKLHKEVEQMALDTYKALKCSV 176

Query: 243 ISRSDFLF 250
            SR D + 
Sbjct: 177 YSRIDMIV 184


>gi|315426386|dbj|BAJ48025.1| D-alanine-D-alanine ligase [Candidatus Caldiarchaeum subterraneum]
          Length = 640

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 61/296 (20%), Positives = 121/296 (40%), Gaps = 25/296 (8%)

Query: 20  KACASALEDAGFKVSQIDVDRSVGLVLAHLK--PDLAFNVLHGNFGED----GLVQAILE 73
           K     + +  +K   +D    +   L   +    + FN+    F  +      V A+LE
Sbjct: 323 KNALHGIRE--YKFIFVDDHSKMIEFLTKNRAGIHMVFNLCDDGFKNNPEMEAHVPALLE 380

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPL 133
           +L + YT +G     L  DK + K + SS G+PV    ++      S   +  P ++KP 
Sbjct: 381 MLGVRYTGAGPRCLTLCYDKAKVKAIASSMGIPVPHHTILFNGDNGSLKHVKYPVIVKPN 440

Query: 134 KGGSSLGII---VIKKDQSIPLDLLQ-SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
            G +S GI    V++    +   + +    W +   +L+E++V+G++LT  ++G+   DV
Sbjct: 441 YGDNSWGITERNVVRNRDELISAIKEIRVKWGYSGPILVEEFVEGMDLTVSILGNPPQDV 500

Query: 190 TEIAVPKS---------DFYSYELKYSSLNSTHV---LPAKIPLDIYKEVQRLAFLAHQA 237
               + +             +Y  K+   +       +P ++P  + +++          
Sbjct: 501 VLPILTEDYSKLPDGLPKILTYAAKWCPDSPYRFVNSIPVELPHRLREQLIWWCRKLFAM 560

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           + CR  +R D+           LE+N  PG      F +     G+S+R +L  ++
Sbjct: 561 LECRDYARFDWRL-GSDGVPRLLEVNPNPGWVWDGHFAKACLVLGWSYRRMLHEIL 615


>gi|209162489|gb|ACI39952.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162491|gb|ACI39953.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162493|gb|ACI39954.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162495|gb|ACI39955.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162497|gb|ACI39956.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162503|gb|ACI39959.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162515|gb|ACI39965.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162517|gb|ACI39966.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162519|gb|ACI39967.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162521|gb|ACI39968.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162523|gb|ACI39969.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162525|gb|ACI39970.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162527|gb|ACI39971.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162529|gb|ACI39972.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162531|gb|ACI39973.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162533|gb|ACI39974.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162535|gb|ACI39975.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162537|gb|ACI39976.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162539|gb|ACI39977.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162541|gb|ACI39978.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162543|gb|ACI39979.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162545|gb|ACI39980.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162547|gb|ACI39981.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162549|gb|ACI39982.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162551|gb|ACI39983.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162553|gb|ACI39984.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162555|gb|ACI39985.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162557|gb|ACI39986.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162561|gb|ACI39988.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162573|gb|ACI39994.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162583|gb|ACI39999.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162593|gb|ACI40004.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162597|gb|ACI40006.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162613|gb|ACI40014.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162615|gb|ACI40015.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162617|gb|ACI40016.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162619|gb|ACI40017.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162621|gb|ACI40018.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162623|gb|ACI40019.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162625|gb|ACI40020.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162627|gb|ACI40021.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162629|gb|ACI40022.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162631|gb|ACI40023.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162633|gb|ACI40024.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162635|gb|ACI40025.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162637|gb|ACI40026.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162641|gb|ACI40028.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162643|gb|ACI40029.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162657|gb|ACI40036.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162665|gb|ACI40040.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162667|gb|ACI40041.1| D-alanine-D-alanine ligase [Clostridium septicum]
 gi|209162679|gb|ACI40047.1| D-alanine-D-alanine ligase [Clostridium septicum]
          Length = 184

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 58/188 (30%), Positives = 99/188 (52%), Gaps = 7/188 (3%)

Query: 66  GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---DSQH 122
           G VQ++L+ L+IPY+  G L+SAL MDK  +K+++ S  +     + V        D   
Sbjct: 1   GTVQSVLQTLDIPYSGCGPLSSALCMDKDLTKRILKSNNIRTARWLNVRSVEEINYDKIE 60

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            +  P  IKP  GGSS+    I K + +   + +   W   ++++IE+++ G E+TC V 
Sbjct: 61  EMKYPVFIKPTNGGSSVATFKITKKEDVEEAVREGLKW--DNEVMIEEFIKGEEITCPVF 118

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
                 V  I  PK+DF+ Y  KYS   +  V+  ++   ++KEV+++A   ++A+ C  
Sbjct: 119 KGEMFPVIAIR-PKTDFFDYTQKYSGDGAEEVI-IELEEKLHKEVEQMALDTYKALKCSV 176

Query: 243 ISRSDFLF 250
            SR D + 
Sbjct: 177 YSRIDMIV 184


>gi|302389045|ref|YP_003824866.1| D-alanine--D-alanine ligase [Thermosediminibacter oceani DSM 16646]
 gi|302199673|gb|ADL07243.1| D-alanine--D-alanine ligase [Thermosediminibacter oceani DSM 16646]
          Length = 324

 Score =  176 bits (447), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 72/316 (22%), Positives = 124/316 (39%), Gaps = 43/316 (13%)

Query: 12  REVSLS---SGKACAS-----------ALEDAGFKVSQIDVDRSVGL----VLAHLKPDL 53
           R V L    SG+               A+++AGF    I+  +         +   K DL
Sbjct: 11  RNVELQLKLSGENIYDDAYEEAYQHFSAIKEAGFDAVMIEWKKDNPQETLRKVLEEKVDL 70

Query: 54  AFNV--LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
            FN   L           A LE   IP+  SG+    ++ DK   K++V+   +P    I
Sbjct: 71  VFNASSLEEV--------AFLEAFGIPFAGSGLDL--VATDKATRKKIVAYHKLPTPRFI 120

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGII--VIKKDQSIPLDLLQSSSWNHGDQLLIE 169
           +V        H +  P  +KP++G  S GI    I +       ++   +   G   L+E
Sbjct: 121 VVEDPNEIPDHDLKYPLFVKPVRGRGSAGISEENIIERHEDLARVVSKITDKIGQPALVE 180

Query: 170 QYVDGIELTCGVMG---DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE 226
           +++ G E+T G++G      L   EI    +   ++E K    N     PA++  +  ++
Sbjct: 181 EFIRGREITVGIIGYKNPRVLPPVEIEYNSTRTNTFEHKM-FDNEIIHCPARLSPEEEEK 239

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM------TPVSIFPEMAAY 280
           V+  A   ++ +  +  SR D +        ++LEIN   G+      T       MA  
Sbjct: 240 VKSTALSIYKVLNAKDFSRIDMIL-GDDGIPYFLEINTFAGLTMSKDGTHHGYMGYMAKT 298

Query: 281 AGYSFRELLLWMVEDA 296
           AG +  + +  +V  A
Sbjct: 299 AGMTRADFIGSIVRSA 314


>gi|269927458|gb|ACZ53032.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927508|gb|ACZ53057.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927510|gb|ACZ53058.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927512|gb|ACZ53059.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927534|gb|ACZ53070.1| D-alanine-D-alanine ligase [Lactobacillus reuteri DSM 20016]
 gi|269927540|gb|ACZ53073.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927590|gb|ACZ53098.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927592|gb|ACZ53099.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927612|gb|ACZ53109.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927622|gb|ACZ53114.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927628|gb|ACZ53117.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927666|gb|ACZ53136.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
          Length = 210

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 59/213 (27%), Positives = 107/213 (50%), Gaps = 15/213 (7%)

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVIKPLKGG 136
            I ASA+S DK  +K+++S  G+   P ++V             +  +     +KP K G
Sbjct: 1   NIAASAMSFDKDLTKKIISQAGIRNTPYVVVTPENQADYSWGRIEEKLGNLTFVKPAKQG 60

Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVT---EI 192
           SS+GI  +   +     L  +  +++  ++L+EQ + +  E+   ++G+     +    +
Sbjct: 61  SSVGIHRVTNAEEYEKALDDAFKYDY--KILVEQGIANPQEIEISILGNEHPIASKLGAV 118

Query: 193 AVPKSD-FYSYELKYSSLNST-HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
            VPK D FY YE K+   +     LP K+P  +  E+  +A  A++A+G +G++R DFL 
Sbjct: 119 RVPKDDPFYDYENKFVDASGVVFELPVKLPQYLVDEITDMALKAYKALGMKGMARIDFLV 178

Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283
           D  +   +  E N  PG T +S++P+M   +G 
Sbjct: 179 D-SNNVPYLGEPNTLPGFTNISLYPQMWEVSGI 210


>gi|269927602|gb|ACZ53104.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927620|gb|ACZ53113.1| D-alanine-D-alanine ligase [Lactobacillus reuteri mlc3]
          Length = 210

 Score =  176 bits (446), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 58/213 (27%), Positives = 107/213 (50%), Gaps = 15/213 (7%)

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVIKPLKGG 136
            I ASA++ DK  +K+++S  G+   P ++V             +  +     +KP K G
Sbjct: 1   NIAASAMAFDKDLTKKIISQAGIRNTPYVVVTPENRADYSWGRIEEKLGNLTFVKPAKQG 60

Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVT---EI 192
           SS+GI  +   +     L  +  +++  ++L+EQ + +  E+   ++G+     +    +
Sbjct: 61  SSVGIHRVTNAEEYEKALDDAFKYDY--KILVEQGIANPQEIEISILGNEHPIASKLGAV 118

Query: 193 AVPKSD-FYSYELKYSSLNST-HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
            VPK D FY YE K+   +     LP K+P  +  E+  +A  A++A+G +G++R DFL 
Sbjct: 119 RVPKDDPFYDYENKFVDASGVVFELPVKLPQYLVDEITDMALKAYKALGMKGMARIDFLV 178

Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283
           D  +   +  E N  PG T +S++P+M   +G 
Sbjct: 179 D-SNNVPYLGEPNTLPGFTNISLYPQMWEVSGI 210


>gi|294101201|ref|YP_003553059.1| D-alanine--D-alanine ligase [Aminobacterium colombiense DSM 12261]
 gi|293616181|gb|ADE56335.1| D-alanine--D-alanine ligase [Aminobacterium colombiense DSM 12261]
          Length = 367

 Score =  175 bits (445), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 71/299 (23%), Positives = 134/299 (44%), Gaps = 20/299 (6%)

Query: 16  LSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF---GEDGLVQAIL 72
           L + +A ++ +   GF+V   + +  +   L  + PD   N+  G     G +  V  IL
Sbjct: 50  LETVEALSNEIASLGFQVFLFEQNELLLQKLDSIAPDFVLNIAEGLGNYRGRESQVPCIL 109

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP----PY 128
           E L IP++ S   + A+++DK+ +  V+ +  +P   + +       ++  +       Y
Sbjct: 110 ESLNIPFSGSDSASLAIALDKVLTSHVLRASNIPAPKNYVAKLPQDTTEKKVIFNTCQKY 169

Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW---NHGDQLLIEQYVDGIELTCGVMGD- 184
           +IKP   GSS GI +       P  +          +    ++E+++ GIE+T GV G+ 
Sbjct: 170 IIKPRWEGSSKGIFL-DSIADTPEKVKTCIKRIWERYNQPAIVEEFLPGIEITAGVAGNT 228

Query: 185 -----ASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
                  + +T +    S  YS E K +      +  P  +   + K++  LA  A +A+
Sbjct: 229 QPKCIGMMSITPVTENSSFLYSLEEKRNYLERIRYSGPDSMSPQLRKKIGDLAVRAFKAL 288

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTP-VSIFPEMAAYAGYSFRELLLWMVEDA 296
             R I+R DF  D    +   ++IN  PG++P  S  P +   +G  + EL+  ++ +A
Sbjct: 289 ELRDIARIDFRLDDK-GQPRVIDINPLPGLSPAYSDLPILYRLSGGEYSELIQTILREA 346


>gi|269927454|gb|ACZ53030.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927466|gb|ACZ53036.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927468|gb|ACZ53037.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927478|gb|ACZ53042.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927484|gb|ACZ53045.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927486|gb|ACZ53046.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927496|gb|ACZ53051.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927506|gb|ACZ53056.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927514|gb|ACZ53060.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927522|gb|ACZ53064.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927524|gb|ACZ53065.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927526|gb|ACZ53066.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927532|gb|ACZ53069.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927546|gb|ACZ53076.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927548|gb|ACZ53077.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927550|gb|ACZ53078.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927554|gb|ACZ53080.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927562|gb|ACZ53084.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927566|gb|ACZ53086.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927572|gb|ACZ53089.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927578|gb|ACZ53092.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927582|gb|ACZ53094.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927586|gb|ACZ53096.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927588|gb|ACZ53097.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927606|gb|ACZ53106.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927608|gb|ACZ53107.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927610|gb|ACZ53108.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927614|gb|ACZ53110.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927616|gb|ACZ53111.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927624|gb|ACZ53115.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927626|gb|ACZ53116.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927636|gb|ACZ53121.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927638|gb|ACZ53122.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927646|gb|ACZ53126.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927648|gb|ACZ53127.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927650|gb|ACZ53128.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927668|gb|ACZ53137.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927670|gb|ACZ53138.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927672|gb|ACZ53139.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927678|gb|ACZ53142.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927680|gb|ACZ53143.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
          Length = 210

 Score =  175 bits (445), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 59/213 (27%), Positives = 107/213 (50%), Gaps = 15/213 (7%)

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVIKPLKGG 136
            I ASA+S DK  +K+++S  G+   P ++V             +  +     +KP K G
Sbjct: 1   NIAASAMSFDKDLTKKIISQAGIRNTPYVVVTPENRADYSWSRIEEKLGNLTFVKPAKQG 60

Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVT---EI 192
           SS+GI  +   +     L  +  +++  ++L+EQ + +  E+   ++G+     +    +
Sbjct: 61  SSVGIHRVTNAEEYEKALDDAFKYDY--KILVEQGIANPQEIEISILGNEHPIASKLGAV 118

Query: 193 AVPKSD-FYSYELKYSSLNST-HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
            VPK D FY YE K+   +     LP K+P  +  E+  +A  A++A+G +G++R DFL 
Sbjct: 119 RVPKDDPFYDYENKFVDASGVVFELPVKLPQYLVDEITDMALKAYKALGMKGMARIDFLV 178

Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283
           D  +   +  E N  PG T +S++P+M   +G 
Sbjct: 179 D-SNNVPYLGEPNTLPGFTNISLYPQMWEVSGI 210


>gi|2245422|gb|AAB62519.1| D-alanine:D-alanine ligase [Streptococcus anginosus SK52]
          Length = 197

 Score =  175 bits (445), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 57/199 (28%), Positives = 100/199 (50%), Gaps = 11/199 (5%)

Query: 71  ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------I 124
            LE+L++PY    IL+S+++MDK+ +K+V++S G+P  P + V       + +      +
Sbjct: 1   FLEVLKMPYVGCNILSSSVAMDKITTKRVLASAGIPQVPYVAVIEGENIDEKIAAVEANL 60

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
           + P   KP   GSS+GI   +    +   L    ++ +  ++LIEQ V+  E+  G++G+
Sbjct: 61  TYPVFTKPSNMGSSVGISKSENQDELRSAL--ELAFKYDSRVLIEQGVNAREIEVGLLGN 118

Query: 185 ASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
                +     V    FY YE KY     T  +PAK+  D+   +++ A     AIG  G
Sbjct: 119 EGAKSSLPGEVVKDVAFYDYEAKYIDNKITIDIPAKLSEDVIATMRQYAEKRFHAIGGVG 178

Query: 243 ISRSDFLFDPLSRKVFWLE 261
           ++R DF +     ++F  E
Sbjct: 179 LARCDFFYTDK-GEIFLNE 196


>gi|269927452|gb|ACZ53029.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927456|gb|ACZ53031.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927460|gb|ACZ53033.1| D-alanine-D-alanine ligase [Lactobacillus reuteri ATCC 53608]
 gi|269927462|gb|ACZ53034.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927464|gb|ACZ53035.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927470|gb|ACZ53038.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927472|gb|ACZ53039.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927474|gb|ACZ53040.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927480|gb|ACZ53043.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927482|gb|ACZ53044.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927488|gb|ACZ53047.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927490|gb|ACZ53048.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927492|gb|ACZ53049.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927494|gb|ACZ53050.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927498|gb|ACZ53052.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927500|gb|ACZ53053.1| D-alanine-D-alanine ligase [Lactobacillus reuteri ATCC 53608]
 gi|269927502|gb|ACZ53054.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927504|gb|ACZ53055.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927516|gb|ACZ53061.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927518|gb|ACZ53062.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927520|gb|ACZ53063.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927528|gb|ACZ53067.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927530|gb|ACZ53068.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927536|gb|ACZ53071.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927538|gb|ACZ53072.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927542|gb|ACZ53074.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927544|gb|ACZ53075.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927552|gb|ACZ53079.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927556|gb|ACZ53081.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927558|gb|ACZ53082.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927560|gb|ACZ53083.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927564|gb|ACZ53085.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927568|gb|ACZ53087.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927570|gb|ACZ53088.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927574|gb|ACZ53090.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927576|gb|ACZ53091.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927580|gb|ACZ53093.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927584|gb|ACZ53095.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927594|gb|ACZ53100.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927596|gb|ACZ53101.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927598|gb|ACZ53102.1| D-alanine-D-alanine ligase [Lactobacillus reuteri lpuph]
 gi|269927600|gb|ACZ53103.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927604|gb|ACZ53105.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927618|gb|ACZ53112.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927630|gb|ACZ53118.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927632|gb|ACZ53119.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927634|gb|ACZ53120.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927640|gb|ACZ53123.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927642|gb|ACZ53124.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927644|gb|ACZ53125.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927652|gb|ACZ53129.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927654|gb|ACZ53130.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927656|gb|ACZ53131.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927658|gb|ACZ53132.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927662|gb|ACZ53134.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927674|gb|ACZ53140.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927676|gb|ACZ53141.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927682|gb|ACZ53144.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
          Length = 210

 Score =  175 bits (445), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 59/213 (27%), Positives = 107/213 (50%), Gaps = 15/213 (7%)

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVIKPLKGG 136
            I ASA+S DK  +K+++S  G+   P ++V             +  +     +KP K G
Sbjct: 1   NIAASAMSFDKDLTKKIISQAGIRNTPYVVVTPENRADYSWGRIEEKLGNLTFVKPAKQG 60

Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVT---EI 192
           SS+GI  +   +     L  +  +++  ++L+EQ + +  E+   ++G+     +    +
Sbjct: 61  SSVGIHRVTNAEEYEKALDDAFKYDY--KILVEQGIANPQEIEISILGNEHPIASKLGAV 118

Query: 193 AVPKSD-FYSYELKYSSLNST-HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
            VPK D FY YE K+   +     LP K+P  +  E+  +A  A++A+G +G++R DFL 
Sbjct: 119 RVPKDDPFYDYENKFVDASGVVFELPVKLPQYLVDEITDMALKAYKALGMKGMARIDFLV 178

Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283
           D  +   +  E N  PG T +S++P+M   +G 
Sbjct: 179 D-SNNVPYLGEPNTLPGFTNISLYPQMWEVSGI 210


>gi|269927660|gb|ACZ53133.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927664|gb|ACZ53135.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
          Length = 210

 Score =  175 bits (445), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 59/213 (27%), Positives = 108/213 (50%), Gaps = 15/213 (7%)

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVIKPLKGG 136
            I+ASA+S DK  +K+++S  G+   P ++V             +  +     +KP K G
Sbjct: 1   NIVASAMSFDKDLTKKIISQAGIRNTPYVVVTPENRADYSWGRIEEKLGNLTFVKPAKQG 60

Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVT---EI 192
           SS+GI  +   +     L  +  +++  ++L+EQ + +  E+   ++G+     +    +
Sbjct: 61  SSVGIHRVTNAEEYEKALDDAFKYDY--KILVEQGIANPQEIEISILGNEHPIASKLGAV 118

Query: 193 AVPKSD-FYSYELKYSSLNST-HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
            VPK D FY YE K+   +     LP K+P  +  E+  +A  A++A+G +G++R DFL 
Sbjct: 119 RVPKDDPFYDYENKFVDASGVVFELPVKLPQYLVDEITDMALKAYKALGMKGMARIDFLV 178

Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283
           D  +   +  E N  PG T +S++P+M   +G 
Sbjct: 179 D-SNNVPYLGEPNTLPGFTNISLYPQMWEVSGI 210


>gi|269927476|gb|ACZ53041.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
          Length = 210

 Score =  175 bits (445), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 60/213 (28%), Positives = 107/213 (50%), Gaps = 15/213 (7%)

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVIKPLKGG 136
            I ASA+S DK  +K+++S  G+   P I+V             +  +     +KP K G
Sbjct: 1   NIAASAMSFDKDLTKKIISQAGIRNTPYIVVTPENRADYSWGRIEEKLGNLTFVKPAKQG 60

Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVT---EI 192
           SS+GI  +   +     L  +  +++  ++L+EQ + +  E+   ++G+     +    +
Sbjct: 61  SSVGIHRVTNAEEYEKALDDAFKYDY--KILVEQGIANPQEIEISILGNEHPIASKLGAV 118

Query: 193 AVPKSD-FYSYELKYSSLNST-HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
            VPK D FY YE K+   +     LP K+P  +  E+  +A  A++A+G +G++R DFL 
Sbjct: 119 RVPKDDPFYDYENKFVDASGVVFELPVKLPQYLVDEITDMALKAYKALGMKGMARIDFLV 178

Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283
           D  +   +  E N  PG T +S++P+M   +G 
Sbjct: 179 D-SNNVPYLGEPNTLPGFTNISLYPQMWEVSGI 210


>gi|1814246|gb|AAB41853.1| D-Alanine:D-Alanine ligase [Streptococcus mitis]
          Length = 197

 Score =  175 bits (445), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 58/199 (29%), Positives = 102/199 (51%), Gaps = 11/199 (5%)

Query: 71  ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLI 124
            LE+L++PY    IL+S+L+MDK+ +K+V+ S G+   P + +           + +  +
Sbjct: 1   FLEVLKMPYVGCNILSSSLAMDKITTKRVLESVGIAQVPYVAIVEGDDMTAKIAEVEEKL 60

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
           + P   KP   GSS+GI   +  + +   L    ++ +  ++L+EQ V+  E+  G++G+
Sbjct: 61  TYPVFTKPSNMGSSVGISKSENQEELRQALKL--AFQYDSRVLVEQGVNAREIEVGLLGN 118

Query: 185 ASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
             +  T     V    FY Y+ KY     T  +PAKI  D+   +++ A  A +AIG  G
Sbjct: 119 YDVKSTLPGEVVKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAIGGLG 178

Query: 243 ISRSDFLFDPLSRKVFWLE 261
           +SR DF +     ++F  E
Sbjct: 179 LSRCDFFYTDK-GEIFLNE 196


>gi|2245426|gb|AAB62520.1| D-alanine:D-alanine ligase [Streptococcus intermedius]
          Length = 197

 Score =  175 bits (445), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 59/199 (29%), Positives = 98/199 (49%), Gaps = 11/199 (5%)

Query: 71  ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------I 124
            LE+L++PY    IL+S+++MDK+ +K+V++S G+P  P + V       + +      +
Sbjct: 1   FLEVLKMPYVGCNILSSSIAMDKITTKRVLASAGIPQVPYVAVVEGEDVEEKIAEVEVNL 60

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
           + P   KP   GSS+GI   +    +   L    ++ +  ++LIEQ V+  E+  G+ G+
Sbjct: 61  TYPVFTKPSNMGSSVGISKSENKDELCSALKL--AFKYDTRVLIEQGVNAREIEVGLFGN 118

Query: 185 ASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
                +     V    FY YE KY     T  +PAK+  D+   +   A  A  AIG  G
Sbjct: 119 EGAKSSLPGEVVKDVAFYDYEAKYIDNKITMDIPAKLSEDVIATMCDYAEKAFHAIGGVG 178

Query: 243 ISRSDFLFDPLSRKVFWLE 261
           +SR DF +     ++F  E
Sbjct: 179 LSRCDFFYTNK-GEIFLNE 196


>gi|296128393|ref|YP_003635643.1| D-alanine/D-alanine ligase [Cellulomonas flavigena DSM 20109]
 gi|296020208|gb|ADG73444.1| D-alanine/D-alanine ligase [Cellulomonas flavigena DSM 20109]
          Length = 333

 Score =  175 bits (445), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 83/309 (26%), Positives = 139/309 (44%), Gaps = 23/309 (7%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL------------VLAH 48
           +AV+ GG ++E +VSL+S  A  +A       V ++ V R                V   
Sbjct: 20  VAVVGGGANAEHDVSLASAAAVRAA-LTPSHDVVELTVARDGSWWSGGDALTFAQAVGLV 78

Query: 49  LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
              D+    +HG  GEDG + A+ +L  +    SG+ A A+ MDK  +K V ++ GV V 
Sbjct: 79  AACDVLLPAVHGPRGEDGTLAALADLAGVACVGSGVRAGAVGMDKWVTKLVAAAVGVAVA 138

Query: 109 PSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168
              LV R   ++      P V+KP+  GSS G+  +   + +   +  +      D++L+
Sbjct: 139 DGRLV-RGVAEACADPRLPAVVKPVSSGSSHGVRRVDTVEDLADAVAAALE--LDDRVLV 195

Query: 169 EQYVDGIELTCGVM---GDASLDVTEIAVPKSDF-YSYELKYSSLNSTHVLPAKIPLDIY 224
           E+ V G E+   V+      +L    + +  +   +    KY   ++  V+PA +     
Sbjct: 196 EEVVTGREIDVAVLRRADGTTLVSPALEIGHAGAVFDTATKYD-GSARFVVPAPLEPADA 254

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
           + +   A     A+GC G++R+DF            E+N  PGMT  S  P M A AG +
Sbjct: 255 EALAAAALSVVDALGCDGVARADFFLTARG--PVLNEVNTMPGMTAHSQVPVMLAAAGLT 312

Query: 285 FRELLLWMV 293
           + EL+  +V
Sbjct: 313 YAELVAELV 321


>gi|1255013|gb|AAB17897.1| D-alanine:D-alanine ligase [Enterococcus avium]
          Length = 200

 Score =  174 bits (443), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 53/202 (26%), Positives = 97/202 (48%), Gaps = 14/202 (6%)

Query: 71  ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------Q 121
            LE L++PY  +G++ SA +MDK+ +K ++ + G+P  P + V +              +
Sbjct: 1   FLETLDMPYVGAGVMTSACAMDKIMTKYILQAAGIPQVPYVPVLKNQWKENPKQIFDKCE 60

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
             +  P  +KP   GSS+GI   +  + +   L +  ++ +  + L+EQ +D  E+   V
Sbjct: 61  GTLLYPMFVKPANMGSSVGISRAENREELQNALQE--AYRYDSRALVEQGIDACEIEVAV 118

Query: 182 MGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
           +G+  +  T     V +  FY Y  KY +      +PA +P D+ ++ +  A  A   +G
Sbjct: 119 LGNDDVRTTLPGEVVKEEAFYDYNAKYINNTIQMAIPADVPEDVMQKARDFAKSAISMLG 178

Query: 240 CRGISRSDFLFDPLSRKVFWLE 261
             G+SR DF       ++F  E
Sbjct: 179 GSGLSRCDFFLTNK-NELFLDE 199


>gi|308272544|emb|CBX29148.1| hypothetical protein N47_J01290 [uncultured Desulfobacterium sp.]
          Length = 335

 Score =  174 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 72/306 (23%), Positives = 131/306 (42%), Gaps = 19/306 (6%)

Query: 7   GISSEREVSLSSGK---ACASALEDAGFKVSQIDVDRSVGLVLAHLK-PDLAFNVLHGNF 62
           G S E      S +   A   AL D G+K  +I   +++   L+  K  D+ FN+  G F
Sbjct: 17  GFSEEDAAEFDSEETIDAIEKALSDLGYKTERIGHIKNLVKYLSQGKRWDIVFNIAEGCF 76

Query: 63  G--EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
           G   +  + AIL+  +I YT S  L  +L+++K  +K +V + G+      LV + +   
Sbjct: 77  GAGREAQIPAILDAYKIAYTFSDPLVLSLTLNKAVTKLIVQNLGIATPAFALVEKLSDID 136

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKK--DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
              +  P  +KP+  G+  GI    K  ++    ++            L+E ++ G E T
Sbjct: 137 SISLPFPLFVKPVAEGTGKGISAASKTTNKDDLYNVCFDLLDRFKQPALVETHLPGREFT 196

Query: 179 CGVMGDAS-------LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
            G++G          ++V      + D YSY  K           A     + ++  ++A
Sbjct: 197 VGIIGTGEKARVAGVIEVLLNEHAEGDSYSYINKKKYEELVSYRLA--DDKMARDTAKVA 254

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP-VSIFPEMAAYAGYSFRELLL 290
             A   + C    R D   D ++    ++E+N   G+ P  S  P +   +G S++EL+ 
Sbjct: 255 LDAWVGLKCLDAGRIDIRSD-VNGYPNFIEVNPLAGLHPIHSDLPILCRLSGISYKELID 313

Query: 291 WMVEDA 296
            +++ A
Sbjct: 314 EIMKSA 319


>gi|1814252|gb|AAB41856.1| D-Alanine:D-Alanine ligase [Streptococcus salivarius]
          Length = 197

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 50/199 (25%), Positives = 97/199 (48%), Gaps = 11/199 (5%)

Query: 71  ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLI 124
            LE L++PY  + +L+S+++MDK+ +K ++   GVP     +            ++   +
Sbjct: 1   FLETLKLPYVGTNVLSSSVAMDKIMTKHILEVAGVPQVAYTVFIEGEDLEAAVAETLEKL 60

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
           + P  +KP   GSS+GI   + +  +   +  +    +  ++LIEQ V   E+  G++G+
Sbjct: 61  TFPVFVKPANMGSSVGISKAENEAELRAAIDLAL--KYDSRILIEQGVVAREIEVGILGN 118

Query: 185 ASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            ++  T     V    FY Y+ KY     T  +PA +P ++  +++  A  A +A+G  G
Sbjct: 119 TTVKTTNPGEVVKDVAFYDYQAKYIDNKITMDIPAHVPAEVMTQMRVYAAKAFRALGGCG 178

Query: 243 ISRSDFLFDPLSRKVFWLE 261
           ++R DF        ++  E
Sbjct: 179 LARCDFFLTE-DGAIYLNE 196


>gi|1814250|gb|AAB41855.1| D-Alanine:D-Alanine ligase [Streptococcus oralis]
          Length = 197

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 59/199 (29%), Positives = 101/199 (50%), Gaps = 11/199 (5%)

Query: 71  ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLI 124
            LE+L++PY    IL+S+L+MDK+ +K+V+ S G+   P +       V     + +  +
Sbjct: 1   FLEVLKMPYVGCNILSSSLAMDKITTKRVLESVGIAQVPYVAIVEGDDVTAKIAEVEEKL 60

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
           + P   KP   GSS+GI   +  + +   L    ++ +  ++L+EQ V+  E+  G++G+
Sbjct: 61  TYPVFTKPSNMGSSVGISKSENQEELRQAL--ELAFQYDSRVLVEQGVNAREIEVGLLGN 118

Query: 185 ASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
             +  T     V    FY Y+ KY     T  +PAKI  D+   ++  A  A +AIG  G
Sbjct: 119 YDVKSTLPGEVVKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRHNAETAFRAIGGLG 178

Query: 243 ISRSDFLFDPLSRKVFWLE 261
           +SR DF +     ++F  E
Sbjct: 179 LSRCDFFYTDK-GEIFLNE 196


>gi|292493558|ref|YP_003528997.1| D-alanine--D-alanine ligase [Nitrosococcus halophilus Nc4]
 gi|291582153|gb|ADE16610.1| D-alanine--D-alanine ligase domain protein [Nitrosococcus
           halophilus Nc4]
          Length = 350

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 69/315 (21%), Positives = 121/315 (38%), Gaps = 28/315 (8%)

Query: 6   GGI-SSEREVSLSSGKACASALEDA-GFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFG 63
           GG  S+E    + +      AL +   ++ + +D   ++   L    PD   N     + 
Sbjct: 35  GGRFSAED---IEAVDRVKEALGELQDYRFTYLDNHSTLIANLTADPPDFVLNFCDTGYK 91

Query: 64  EDGL----VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
                   + A+LE+L IPY+ +G     +  DK   + V  + G+PV     V      
Sbjct: 92  NQARQELHIPALLEMLGIPYSGAGPTCLGMCYDKSLVRSVARTHGIPVPAETFVRGNDRH 151

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIK--KDQSIPLDLLQSSSWNHGD-QLLIEQYVDGIE 176
                + P +IKP +   SLGI       D+      L   +    +  LLI++++ G E
Sbjct: 152 GAVSQNFPVLIKPNRADGSLGITKDSLVHDEQQARAYLNKLAMEFPNWDLLIQEFLPGEE 211

Query: 177 LTCGVMGDASLDVTEIAVPKSDF-----------YSYELK----YSSLNSTHVLPAKIPL 221
            + GV+G+ +     + +   D+            +Y  K               A +  
Sbjct: 212 YSVGVLGNPASGFMILPILAVDYSKLVASRLPPILAYASKIDPQSPYWTDIKYCEASLKE 271

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYA 281
           D+ + +        + +GCR  +R DF  D    ++  LE+N  P          MA +A
Sbjct: 272 DLRQRLVDYCLFLFERLGCRDYARFDFRTDAQ-GEIKLLEVNPNPAWCWDGKLNLMAGFA 330

Query: 282 GYSFRELLLWMVEDA 296
           GY + ELL  ++  A
Sbjct: 331 GYHYAELLERILHAA 345


>gi|5616190|gb|AAD45667.1|AF136925_1 D-alanine-D-serine ligase [Enterococcus faecalis]
          Length = 201

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 61/204 (29%), Positives = 109/204 (53%), Gaps = 10/204 (4%)

Query: 69  QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-----DSQHL 123
           Q + ELL+IPY   GI A+A+SM+K+   Q     GV   PS+++ +        +   +
Sbjct: 1   QGVFELLDIPYVGCGIGAAAISMNKIMLHQFAEIVGVKSTPSMIIEKGQDLQKVDEFAKI 60

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
              P  IKP + GSS GI  +++   +   + ++S   +  ++LI++ V G+E+ CG++G
Sbjct: 61  HGFPLYIKPNEAGSSKGISKVEQKSDLYKAIDEAS--KYDSRILIQKEVKGVEIGCGILG 118

Query: 184 DASLDVTEIAVPK--SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241
           +  L V E         F+ YE KY+ + +  +LPAK+ +D  +++Q  A   ++ +GC+
Sbjct: 119 NEQLVVGECDQISLVDGFFDYEEKYNLVTAEILLPAKLSIDKKEDIQIKAKKLYRLLGCK 178

Query: 242 GISRSDFLFDPLSRKVFWLEINVQ 265
           G++R DF       ++   EIN  
Sbjct: 179 GLARIDFFLT-DDGEILLNEINTL 201


>gi|149922566|ref|ZP_01910996.1| hypothetical protein PPSIR1_41439 [Plesiocystis pacifica SIR-1]
 gi|149816593|gb|EDM76088.1| hypothetical protein PPSIR1_41439 [Plesiocystis pacifica SIR-1]
          Length = 338

 Score =  173 bits (440), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 71/290 (24%), Positives = 118/290 (40%), Gaps = 20/290 (6%)

Query: 26  LEDAGFKVSQIDVDRSVGLV---LAHLKPDLAFNVLHGNFG-EDGL--VQAILELLEIPY 79
           LE+ G  V  + V  S+  +   L   +P + FN+L    G   G   V A LEL  + Y
Sbjct: 43  LENYGHTVLVVGVSDSLEPLERALDEFRPHVVFNLLEEFQGSRAGSHLVLAYLELRGVAY 102

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSL 139
           T        ++ DK  SK ++   GV     ++V       +  +  P ++K L G +S 
Sbjct: 103 TGCNPRGQMMAQDKALSKALLLHYGVQTPDFVVVPVGRKPPRKRLRFPLIVKSLHGDASE 162

Query: 140 GIIVIK-KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA---SLDVTEIAVP 195
           G+           L         H    L+E+Y+ G EL CGV+G     +  V E+ + 
Sbjct: 163 GLAQASVVRSPSKLAARVDFIHRHHGDALVEEYISGRELYCGVIGYRQLTAFPVWELRMT 222

Query: 196 K---------SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRS 246
           K         +    ++L Y       + PA++P  + + +Q ++  A   +   G  R 
Sbjct: 223 KLPTSALNIATQRVKWDLAYQDRVGVELGPARLPPALERRIQDMSKRAFSLLKMTGWGRM 282

Query: 247 DFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           D+       + ++LE N    +  V  F   A  AG S+ ELL  ++  A
Sbjct: 283 DYRL-AEDGEPYFLEANPNGDIAHVEEFASSAKAAGLSYLELLHRLINIA 331


>gi|218508112|ref|ZP_03505990.1| D-alanine-D-alanine ligase protein [Rhizobium etli Brasil 5]
          Length = 184

 Score =  173 bits (439), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 52/182 (28%), Positives = 92/182 (50%), Gaps = 10/182 (5%)

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
             P  IKP + GSS+G+  +   Q     L  + ++ H   LL E++V G E+   V+ D
Sbjct: 1   GLPLFIKPARQGSSVGVAKVHASQEFAPAL--AEAFRHDHTLLAEEFVAGREIEFSVLED 58

Query: 185 ASLD-----VTEIAVPKS-DFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           A+ D       EI   ++  FY+Y+ KY     +   +PA++P ++   ++ +A  A +A
Sbjct: 59  AAGDLFVSRPGEIVPAENHGFYNYDAKYVDENGAALKVPAELPPNVEAAMRDMAAKAFRA 118

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           +GC G++R DF       +    EIN  PG T +S++ +  A +G S+ E++  +V+   
Sbjct: 119 VGCDGMARVDFFLT-SDMRFLINEINTIPGFTDISMYSKAMAASGVSYAEVIDRLVDHGM 177

Query: 298 CL 299
             
Sbjct: 178 AR 179


>gi|27382562|ref|NP_774091.1| hypothetical protein blr7451 [Bradyrhizobium japonicum USDA 110]
 gi|27355734|dbj|BAC52716.1| blr7451 [Bradyrhizobium japonicum USDA 110]
          Length = 348

 Score =  173 bits (439), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 67/295 (22%), Positives = 113/295 (38%), Gaps = 24/295 (8%)

Query: 22  CASALEDAGFKVSQI---DVDRSVGLVLAHLKPDLAFNVL---HGNFGEDGLVQAILELL 75
             S L  AG +V  +   D  + V   +   KP + F +L   H N   D  + + LEL+
Sbjct: 41  VVSTLRAAGHEVRALGAQDEIKPVREAIEEFKPHVVFTLLEEFHNNVAYDQHIASYLELM 100

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN-RFTMDSQHLISPPYVIKPLK 134
           ++PYT        L+  K  SK +V    +      +   R  +     ++ P ++K L 
Sbjct: 101 KVPYTGCNPRGLILARGKDLSKTLVHHRRIAAPAFAVFPMRRKVKRPTRLALPLIVKSLN 160

Query: 135 GGSSLGIIVIK-KDQSIPLDLLQSSSWNH-GDQLLIEQYVDGIELTCGVMGDASLDVTEI 192
              S GI      D    L    +          + EQ+++G EL  GV+G+  L V  I
Sbjct: 161 MDGSFGISQASIVDTDEKLAERVAFIHERVESAAIAEQFIEGRELYVGVLGNNRLRVLPI 220

Query: 193 AVPKSDFYS-------------YELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAI 238
              K                  ++  Y         PA  +  ++   +QR A   ++A+
Sbjct: 221 WELKFGSMGGRRSRHIATEKAKHDTDYQEKVGIVDGPAKDLAPEVTARIQRAAKRIYRAL 280

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           G  G +R DF         +++E N  P +     F   A +AG  + +LL  ++
Sbjct: 281 GLDGYARIDFRL-AADGTPYFIEANPNPEIAKSQEFATAAQHAGLKYPDLLQRIL 334


>gi|7157935|gb|AAF37347.1|AF170808_1 D-alanine:D-alanine ligase [Lactococcus garvieae]
          Length = 198

 Score =  172 bits (436), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 53/201 (26%), Positives = 99/201 (49%), Gaps = 12/201 (5%)

Query: 71  ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLI 124
            LE++ + Y     L+++ +MDK+ +  V ++ GVP  P +             + Q  +
Sbjct: 1   FLEIMRLAYVGPKYLSASSTMDKLLANDVFTAVGVPQVPYVAAYADENQEKIHAEVQDKL 60

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
           + P  +KP   GSS+GI  +   + +   L  + ++ + ++++IEQ V+  E+ C V+G+
Sbjct: 61  TFPVFVKPANMGSSVGISKVSSLEELEAGL--AVAYKYDNRVVIEQGVNAREIECAVLGN 118

Query: 185 AS---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241
                  +    V   DFY Y  KY        +PA IP ++ ++++  A  A+QA+   
Sbjct: 119 GGKVRSTLPGEVVKDVDFYDYRSKYIDNKIEMAIPADIPAEVAEKMRHYAEKAYQAMNGA 178

Query: 242 GISRSDFLFDPLSRKVFWLEI 262
           G+SR DF +D     ++  EI
Sbjct: 179 GLSRCDFFYDQK-GDIYLNEI 198


>gi|20806600|ref|NP_621771.1| D-alanine-D-alanine ligase and related ATP-grasp enzyme
           [Thermoanaerobacter tengcongensis MB4]
 gi|20515044|gb|AAM23375.1| D-alanine-D-alanine ligase and related ATP-grasp enzymes
           [Thermoanaerobacter tengcongensis MB4]
          Length = 332

 Score =  172 bits (436), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 72/294 (24%), Positives = 123/294 (41%), Gaps = 31/294 (10%)

Query: 23  ASALEDAGFKVSQIDVDRSVG---LVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPY 79
             AL++AGF    I+          V+   + D+ FN       E       LEL  IPY
Sbjct: 36  YEALKEAGFDAVLIEWKDDPIKTYEVIQKEEVDIIFNASSLKEIE------FLELFNIPY 89

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILV-NRFTMDSQHLISPPYVIKPLKGGSS 138
             SGI  +A   DK   K +V++ G+P    ++  +   + S   +  P  +KP+ G  S
Sbjct: 90  VGSGIDLAA--TDKRMRKDIVAAHGLPTPKYVVAYSANEIPSVDHLRFPLFVKPIMGRGS 147

Query: 139 LGI---IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA---SLDVTEI 192
            GI    ++     +P  ++   +   G   LIE++++G E+T G++G      L + EI
Sbjct: 148 AGIDEENIVYDKSRLPK-VVSKITEKIGQPALIEEFIEGREVTVGIIGYRNPIVLPLLEI 206

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
                   +YE K    N     P ++P +I K ++  A    + +  R  +R D +   
Sbjct: 207 GYNNVKTNTYEHKM-FDNEIIKCPMEVPEEIEKRIKDTALRIFKVLNARDYARIDMIL-G 264

Query: 253 LSRKVFWLEINVQPGMT----------PVSIFPEMAAYAGYSFRELLLWMVEDA 296
                ++LE+N   G+T                 MA  AG + +E +  ++E A
Sbjct: 265 KDNVPYFLELNTYAGLTTAVERGEKHVHHGYMGYMAKAAGMTRKEFIGKILESA 318


>gi|1814248|gb|AAB41854.1| D-Alanine:D-Alanine ligase [Streptococcus mutans]
          Length = 198

 Score =  171 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 57/200 (28%), Positives = 98/200 (49%), Gaps = 12/200 (6%)

Query: 71  ILELLEIPYTHSGILASALSMDKMRSKQVVSSCG-VPVCPSILVNRFT------MDSQHL 123
            LE+L++PY  + IL+S+++MDK+ +KQV+ S   +P    + +           + +  
Sbjct: 1   FLEVLKMPYVGTNILSSSVAMDKITTKQVLESATTIPQVAYVALIEGEPLESKLAEVEEK 60

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           +  P  +KP   GSS+GI   +    +   +  +    +  ++LIEQ VD  E+  G++G
Sbjct: 61  LIYPVFVKPANMGSSVGISKAENRTDLKQAIALAL--KYDSRVLIEQGVDAREIEVGILG 118

Query: 184 DASLDVTEIA--VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241
           +  +  T     V    FY YE KY     T  +PA+I   I ++++     A + +GC 
Sbjct: 119 NTDVKTTLPGEIVKVVAFYDYEAKYIDNKITMAIPAEIDPVIVEKMRDYRATAFRTLGCC 178

Query: 242 GISRSDFLFDPLSRKVFWLE 261
           G+SR DF       KV+  E
Sbjct: 179 GLSRCDFFLTE-DGKVYLNE 197


>gi|51921845|gb|AAU14064.1| VanB [Enterococcus faecalis]
          Length = 244

 Score =  171 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 54/188 (28%), Positives = 93/188 (49%), Gaps = 9/188 (4%)

Query: 49  LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
            + D+AF VLHG  GEDG +Q + EL  IPY    I +SA  MDK  +  +  + G+ V 
Sbjct: 59  RRIDVAFPVLHGKCGEDGAIQGLFELSGIPYVGCDIQSSAACMDKSLAYILTKNAGIAVP 118

Query: 109 PSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168
              ++ +        ++ P  +KP + GSS G+  +   + +   +   ++  +  ++LI
Sbjct: 119 EFQMIEKGDKPEARTLTYPVFVKPARSGSSFGVTKVNSTEELNAAI--EAAGQYDGKILI 176

Query: 169 EQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSY---ELKYSSLNSTHVLPAKIPL 221
           EQ + G E+ C VMG+       +V +I +    F  +   E +  S N+  ++PA IP+
Sbjct: 177 EQAISGCEVGCAVMGNEDDLIVGEVDQIRLSHGIFRIHQENEPEKGSENAMIIVPADIPV 236

Query: 222 DIYKEVQR 229
           +    VQ 
Sbjct: 237 EERNRVQE 244


>gi|758373|gb|AAA87681.1| putative D-alanine:D-alanine ligase [Lactobacillus leichmannii]
          Length = 206

 Score =  171 bits (433), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 54/207 (26%), Positives = 102/207 (49%), Gaps = 18/207 (8%)

Query: 71  ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ--HLISPP- 127
           +  L++ P+    +LA+ ++MDK  +K +    GVPV   + + R+  +      +S   
Sbjct: 1   LFRLIDKPFVGVDVLAARVTMDKEFTKILAQRAGVPVAKWVSIKRYEYEDAKNQKLSYDW 60

Query: 128 ---------YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                      +KP   GSS+GI  +  D +    L  + ++ + D++L+E+ + G E+ 
Sbjct: 61  VSGQLGTTNLFVKPSNQGSSVGITHVTDDSNYAEAL--AEAFKYDDKVLVEEGIVGTEVE 118

Query: 179 CGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLA 234
             V+G+    V+    I    + +YSYE KYS+ ++T +  PA+IP +  ++VQ  A   
Sbjct: 119 TAVLGNDHPVVSGVGRIINADNTWYSYENKYSTESTTTLQIPAQIPAETAEKVQENALKI 178

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLE 261
           +Q   C G++R D +      +V + E
Sbjct: 179 YQITECSGMARIDSMLRESDGEVIFNE 205


>gi|289804450|ref|ZP_06535079.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Typhi str. AG3]
          Length = 244

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 50/238 (21%), Positives = 100/238 (42%), Gaps = 53/238 (22%)

Query: 20  KACASALEDAGFKVSQIDVDRSVGLVLAHLK----------------------------- 50
           K    A++   F V  + +D++    +   +                             
Sbjct: 9   KNIVDAIDKTRFDVVLLGIDKAGQWHVNDAENYLQNADDPAHIALRPSAISLAQVPGKHQ 68

Query: 51  --------------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRS 96
                          D+ F ++HG  GEDG +Q +L +  +P+  S +L+SA  MDK  +
Sbjct: 69  HQLINAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLSSAACMDKDVA 128

Query: 97  KQVVSSCGVPVCPSILVNR------FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150
           K+++   G+ + P I + R         + +  +  P  +KP   GSS+G+  +  +   
Sbjct: 129 KRLLRDAGLNIAPFITLTRTNRHAFSFAEVESRLGLPLFVKPANQGSSVGVSKVANEAQY 188

Query: 151 PLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA--VPKSDFYSYELKY 206
              +  +  ++H  ++++EQ + G E+ C V+G+ +   +     V  S+FY+Y+ KY
Sbjct: 189 QQAVALAFEFDH--KVVVEQGIKGREIECAVLGNDNPQASTCGEIVLNSEFYAYDTKY 244


>gi|238497161|ref|XP_002379816.1| D-alanine--D-alanine ligase, putative [Aspergillus flavus NRRL3357]
 gi|317146742|ref|XP_001821628.2| D-alanine--D-alanine ligase [Aspergillus oryzae RIB40]
 gi|220694696|gb|EED51040.1| D-alanine--D-alanine ligase, putative [Aspergillus flavus NRRL3357]
          Length = 360

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 73/308 (23%), Positives = 133/308 (43%), Gaps = 34/308 (11%)

Query: 20  KACASALEDAGFKVSQIDVDRSVGLVLA---HLKPDLAFNVLHGNFG--EDGLVQAILEL 74
              ASALE  G +V  +   +++   L+   H + DL FN   G FG   +  V A+LE 
Sbjct: 41  NGVASALESLGHRVVHVPGIKTLVKHLSAEHHKQWDLVFNYSEGVFGSARESQVPALLEA 100

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-----QHLISPPYV 129
            +IP+T S     A  +DK ++K ++    +P  P ++V R          +  +  P  
Sbjct: 101 YQIPFTFSDAATLATGIDKGKTKMLLEHYRIPTSPFVIVPRSGEAVDYAALEDQLPYPLF 160

Query: 130 IKPLKGGSSLGIIVIKK---DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186
            KP+   +S GI  + K    + +   +    +     ++L+E+++DG E T  V+G   
Sbjct: 161 AKPIAASTSNGISPLNKILRKEDLQEVVEDLRAEFKDQEILLEKFLDGREFTVAVLGSGD 220

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTH-----------------VLPAKIPLDIYKEVQR 229
                + V +  +Y+ E + S   S                    + A     + KE+  
Sbjct: 221 -RARVLGVSEVTWYNPEGRKSDDLSVDFATSFSKAGRGVGHDMGHVHADPADPLVKEIAE 279

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP-VSIFPEMAAYAGYSFREL 288
           +   A+QA+GC+   R D   D        +E+N   G+ P  S+F  +A   G  ++++
Sbjct: 280 IGLSAYQALGCKDGGRVDIRMD--GAVPCVIEVNPIFGLRPDHSLFTWIAKNNGMEYQDI 337

Query: 289 LLWMVEDA 296
           +  +V++A
Sbjct: 338 IAEIVDNA 345


>gi|170104100|ref|XP_001883264.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164641717|gb|EDR05976.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 375

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 76/327 (23%), Positives = 132/327 (40%), Gaps = 52/327 (15%)

Query: 21  ACASALEDAGFKVSQIDVDRSVGLVLA--------HLKPDLAFNVLHGN---FGEDGLVQ 69
           A A AL   G++V ++   R++   LA        H   D+ FN+  G     G +G V 
Sbjct: 40  AIAEALTALGYRVDRVGNARALISRLASYDREDSFHCPWDIVFNICAGRSGIAGREGHVP 99

Query: 70  AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS---- 125
           +ILE   IP+  S     +L +DK ++K V+   G+   P  +V+        +      
Sbjct: 100 SILECYNIPFVLSDSSTFSLCLDKAKTKMVLEFSGIATAPFAVVHPGQTAEDAIQKSPHR 159

Query: 126 ------PPYVIKPLKGGSSLG---IIVIKKDQSIPLDLLQSSSWNH-GDQLLIEQYVDGI 175
                  P  +KP    +  G   +  I     +   ++QS  +   G  +LIE++++G 
Sbjct: 160 PLLYRQLPLFVKPCTESTGKGIWKMSKITNWSQLN-QVVQSLQYKFPGHDMLIEKFLNGR 218

Query: 176 ELTCGVMGDAS----LDVTEI------------------AVPKSDFYSYELKYSSLNSTH 213
           E T G++G       +   EI                  +   +DFYS+ +K     +  
Sbjct: 219 EFTVGIVGTGENARVIFAMEIKYRLHETKADHDAAQPIASEDDADFYSFAIKSCVHWNEI 278

Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS---RKVFWLEINVQPGMTP 270
           V        +      LA  A++ +GCR + R D   D L     +   +E+N  PG+ P
Sbjct: 279 VDLCNGSDQLATRAGELALRAYRCMGCRDVGRIDVRCDVLDPDLAQPHIMELNPLPGIQP 338

Query: 271 -VSIFPEMAAYAGYSFRELLLWMVEDA 296
             S   + A + G S+  L+  +++ A
Sbjct: 339 GYSDLVKGAEFVGISYEALVGQIMDSA 365


>gi|83769491|dbj|BAE59626.1| unnamed protein product [Aspergillus oryzae]
          Length = 359

 Score =  170 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 73/308 (23%), Positives = 133/308 (43%), Gaps = 34/308 (11%)

Query: 20  KACASALEDAGFKVSQIDVDRSVGLVLA---HLKPDLAFNVLHGNFG--EDGLVQAILEL 74
              ASALE  G +V  +   +++   L+   H + DL FN   G FG   +  V A+LE 
Sbjct: 41  NGVASALESLGHRVVHVPGIKTLVKHLSAEHHKQWDLVFNYSEGVFGSARESQVPALLEA 100

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-----QHLISPPYV 129
            +IP+T S     A  +DK ++K ++    +P  P ++V R          +  +  P  
Sbjct: 101 YQIPFTFSDAATLATGIDKGKTKMLLEHYRIPTSPFVIVPRSGEAVDYAALEDQLPYPLF 160

Query: 130 IKPLKGGSSLGIIVIKK---DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186
            KP+   +S GI  + K    + +   +    +     ++L+E+++DG E T  V+G   
Sbjct: 161 AKPIAASTSNGISPLNKILRKEDLQEVVEDLRAEFKDQEILLEKFLDGREFTVAVLGSGD 220

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTH-----------------VLPAKIPLDIYKEVQR 229
                + V +  +Y+ E + S   S                    + A     + KE+  
Sbjct: 221 -RARVLGVSEVTWYNPEGRKSDDLSVDFATSFSKAGRGVGHDMGHVHADPADPLVKEIAE 279

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP-VSIFPEMAAYAGYSFREL 288
           +   A+QA+GC+   R D   D        +E+N   G+ P  S+F  +A   G  ++++
Sbjct: 280 IGLSAYQALGCKDGGRVDIRMD--GAVPCVIEVNPIFGLRPDHSLFTWIAKNNGMEYQDI 337

Query: 289 LLWMVEDA 296
           +  +V++A
Sbjct: 338 IAEIVDNA 345


>gi|256371402|ref|YP_003109226.1| D-alanine--D-alanine ligase [Acidimicrobium ferrooxidans DSM 10331]
 gi|256007986|gb|ACU53553.1| D-alanine--D-alanine ligase [Acidimicrobium ferrooxidans DSM 10331]
          Length = 369

 Score =  170 bits (431), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 72/349 (20%), Positives = 129/349 (36%), Gaps = 67/349 (19%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAG--------------FKVSQ----------- 35
           + V  GG S E ++S+ +G     AL ++G              ++V             
Sbjct: 6   VGVCFGGPSPEHDISILTGLQALRALAESGGSPVAIYWSKEGSFYRVEPSLEAEAYAGGV 65

Query: 36  -----------------IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIP 78
                            ++    +      L+ D+  N  HG  GEDG +Q  L+L  + 
Sbjct: 66  PAGARPLELVVGRDGGFVEPRGGLRPKRELLELDVVVNCCHGGPGEDGALQGALDLAGVR 125

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSS 138
           YT      +AL MDK+    ++   G+   P     R T D       PY+ KP  GGSS
Sbjct: 126 YTGPSARTAALGMDKLAFASLLRHHGIACLPREDGRRVTFD------GPYIAKPRFGGSS 179

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--MGDASLDVTEIAV-- 194
           +GI V++    +   + +S  +     ++     D +++   +      +L   E  +  
Sbjct: 180 IGIEVLEDRAQLEARMQRSEHF-RDGMVVEPYRPDLMDVQVALRRFPTPTLSAIERPLRS 238

Query: 195 -PKSDFYSYELKYSSLNSTHVLPAKIP----LDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
            P     +Y  KY  +      P ++P     ++ + ++ LA    + +  RG+ R DF 
Sbjct: 239 APGEPILTYREKYQPIGGMATAPRELPAAIAPELAETIRSLALSVGELLDSRGVMRVDF- 297

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIF--PEMAAYAGYSFRELLLWMVEDA 296
                 + +  E+N  PG     +F  P+        F   L   + +A
Sbjct: 298 LASTEGECYVNEVNTIPGSLSHYLFVEPK------IPFAAQLEADIREA 340


>gi|1814242|gb|AAB41851.1| D-Alanine:D-Alanine ligase [Streptococcus equinus]
          Length = 197

 Score =  169 bits (430), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 59/199 (29%), Positives = 101/199 (50%), Gaps = 11/199 (5%)

Query: 71  ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLI 124
            LE+L++PY  + IL+S+++MDK+ +K V+ S GVP+   +       + +   +    +
Sbjct: 1   FLEILKMPYVGTNILSSSVAMDKISTKHVLESAGVPLVAYVTYVEGADLEKAVAEVNEKL 60

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
           + P  IKP   GSS+GI     ++ +   +  +    +  ++LIE  V+  E+  G++G+
Sbjct: 61  TYPVFIKPANMGSSVGISKADDEEGLRSAIDLAL--KYDSRILIETGVNAREIEVGILGN 118

Query: 185 ASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
           A +  T     V    FY Y+ KY     T  +PA I  +I +E++  A  A +AIG  G
Sbjct: 119 ADVQTTLPGEVVKDVAFYDYDAKYIDNKITMDIPAHIDSNIMEEMRGYATTAFRAIGGCG 178

Query: 243 ISRSDFLFDPLSRKVFWLE 261
           +SR DF        V+  E
Sbjct: 179 LSRCDFFLTE-DGHVYLNE 196


>gi|315105143|gb|EFT77119.1| D-ala D-ala ligase [Propionibacterium acnes HL050PA2]
          Length = 197

 Score =  169 bits (429), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 51/184 (27%), Positives = 92/184 (50%), Gaps = 12/184 (6%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VL GG+S +R++SL SG+  A AL   G +V + D+D ++   L      + F +LHG
Sbjct: 5   VVVLAGGLSHQRDISLKSGRTVAQALRRVGHEVVEADIDSALIETLRANNGAVVFPMLHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GE+G +  +L+L++IPY  S      +S DK  + + V++ GV     + +       
Sbjct: 65  GLGENGALLEVLQLMDIPYVGSSPATCRISFDKSIASRAVAAAGVVTPQQVALPHNVFRE 124

Query: 121 ----------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                         S P ++KP  GGSSLG+  +     +P  +    ++ + D +++E+
Sbjct: 125 LGAQMVMRSIAEKFSLPVIVKPAHGGSSLGVTKVDGVDDLPQAVAN--AYAYDDMVVVEE 182

Query: 171 YVDG 174
           ++ G
Sbjct: 183 FIVG 186


>gi|282853024|ref|ZP_06262361.1| D-ala D-ala ligase N-terminal domain protein [Propionibacterium
           acnes J139]
 gi|282582477|gb|EFB87857.1| D-ala D-ala ligase N-terminal domain protein [Propionibacterium
           acnes J139]
 gi|314922657|gb|EFS86488.1| D-ala D-ala ligase [Propionibacterium acnes HL001PA1]
 gi|314965740|gb|EFT09839.1| D-ala D-ala ligase [Propionibacterium acnes HL082PA2]
 gi|314982882|gb|EFT26974.1| D-ala D-ala ligase [Propionibacterium acnes HL110PA3]
 gi|315091191|gb|EFT63167.1| D-ala D-ala ligase [Propionibacterium acnes HL110PA4]
 gi|315094422|gb|EFT66398.1| D-ala D-ala ligase [Propionibacterium acnes HL060PA1]
 gi|327328918|gb|EGE70678.1| D-alanine--D-alanine ligase B [Propionibacterium acnes HL103PA1]
          Length = 197

 Score =  169 bits (429), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 50/184 (27%), Positives = 91/184 (49%), Gaps = 12/184 (6%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VL GG+S +R++SL SG+  A AL   G +V + D+D ++   L      + F +LHG
Sbjct: 5   VVVLAGGLSHQRDISLKSGRTVAQALRRVGHEVVEADIDSALIETLRANDGAVVFPMLHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GE+G +  +L+L++IPY  S      +S DK  + + V++ GV     + +       
Sbjct: 65  GLGENGALLEVLQLMDIPYVGSSPATCRISFDKSIASRAVAAAGVVTPQQVALPHNVFRE 124

Query: 121 ----------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                           P ++KP  GGSSLG+  +     +P  +    ++ + D +++E+
Sbjct: 125 LGAQMVMRSIAEKFGLPVIVKPAHGGSSLGVTKVDGVDDLPQAVAN--AYAYDDMVVVEE 182

Query: 171 YVDG 174
           ++ G
Sbjct: 183 FIVG 186


>gi|126656685|ref|ZP_01727899.1| D-alanyl-D-alanine ligase A [Cyanothece sp. CCY0110]
 gi|126621905|gb|EAZ92613.1| D-alanyl-D-alanine ligase A [Cyanothece sp. CCY0110]
          Length = 340

 Score =  168 bits (427), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 75/270 (27%), Positives = 126/270 (46%), Gaps = 28/270 (10%)

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ--AILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103
           +     DL    +   F   G+ Q  ++ +LL IPY  +     AL+ +K ++K +V S 
Sbjct: 78  ITEQNIDLVLPQM---FCIPGMTQYRSLFDLLNIPYLGNTAELMALTANKAKAKAIVRSM 134

Query: 104 GVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
           GV V    L+++        + PP VIKP    +SLG+ ++K       D     ++ + 
Sbjct: 135 GVKVPYGELLHKGDT---PNLRPPVVIKPDNSDNSLGVTLVKTMDEC--DTALEKAFEYA 189

Query: 164 DQLLIEQYVD-GIELTCGVMGDA----SLDVTEIAVP--KSDFYSYELK----------Y 206
           DQ+L+E+Y++ G E+ CG +       SL + E AV    +   ++E K          Y
Sbjct: 190 DQVLVEEYIELGREVRCGTIVKEGELISLPLEEYAVNTENNPIRNHEDKLKKDDSGELTY 249

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
           ++ +            + + VQ +A   HQA+GCR  S  DF  DP   + ++LE  +  
Sbjct: 250 AAKDKKKAWIVDSNNPVTRRVQEIAKQCHQALGCRHYSLFDFRIDPQ-GQPWFLEAGLYC 308

Query: 267 GMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             +P S+ P MA   G S  ELL  ++++A
Sbjct: 309 SFSPKSVIPMMAQAKGISLNELLEIVIKEA 338


>gi|328463794|gb|EGF35346.1| D-alanine--D-alanine ligase [Lactobacillus rhamnosus MTCC 5462]
          Length = 252

 Score =  168 bits (427), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 66/253 (26%), Positives = 105/253 (41%), Gaps = 50/253 (19%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV----------------DRSVGL 44
           + VL GG S+ER VS+SSG    +AL   G + + ID+                D +   
Sbjct: 3   IVVLAGGRSTERNVSISSGYRITNALRQKGQQATFIDLFLGYDLEGKTVDQVFDDANTSK 62

Query: 45  VLA------------------------------HLKPDLAFNVLHGNFGEDGLVQAILEL 74
            L                                   D+ F  LHG  GE+G VQA L+L
Sbjct: 63  DLKISDAILTDADINKLRTDGSTQLFGPNVLAICKAADIVFLALHGGDGENGKVQATLDL 122

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL-ISPPYVIKPL 133
             + YT SG LAS ++M+K+ SK+V+   G+         R       +    P V+KP 
Sbjct: 123 NNVKYTGSGPLASGITMNKVFSKEVMLYHGIQTAAFKEFKRNQNGKHTVPFDFPVVVKPT 182

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
            GGSS+G  +    + +   +     +   +  ++E++  G E + GV+   +    EI 
Sbjct: 183 SGGSSVGTHIAHNQEELENGIADV--FRFDNSAIVEEFTPGREFSLGVVNGRAFSAIEIK 240

Query: 194 VPKSDFYSYELKY 206
           V  S +Y ++ K+
Sbjct: 241 V-HSGWYDFKHKF 252


>gi|167038556|ref|YP_001666134.1| D-alanine--D-alanine ligase [Thermoanaerobacter pseudethanolicus
           ATCC 33223]
 gi|320116951|ref|YP_004187110.1| D-alanine--D-alanine ligase [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
 gi|166857390|gb|ABY95798.1| D-alanine--D-alanine ligase [Thermoanaerobacter pseudethanolicus
           ATCC 33223]
 gi|319930042|gb|ADV80727.1| D-alanine--D-alanine ligase [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
          Length = 325

 Score =  168 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 69/292 (23%), Positives = 124/292 (42%), Gaps = 31/292 (10%)

Query: 25  ALEDAGFKVSQIDVDRSVGLV---LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81
           A+++AGF    I+           +   K DL FN             A LE+  IPY  
Sbjct: 38  AIKEAGFDSVLIEWKEDPLETYETIKKEKVDLIFNAS------SMKEVAFLEVFNIPYVG 91

Query: 82  SGILASALSMDKMRSKQVVSSCGVPVCPSILV-NRFTMDSQHLISPPYVIKPLKGGSSLG 140
           SG+    ++ DK   K +V+S G+P    ++  N   + S   +  P  +KP+ G  S G
Sbjct: 92  SGLDV--VATDKRMRKDIVASHGLPTPKYVIAENPQEIPSVDHLKFPLFVKPISGRGSAG 149

Query: 141 I---IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG---DASLDVTEIAV 194
           I    +I     +P  ++   +   G   LIE++++G E+T G++G      L + E+  
Sbjct: 150 IDEENIIYDKDKLP-QVVSKITEKIGQAALIEEFIEGKEVTVGIIGYKHPQVLPLLEVGY 208

Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
                 +YE K    N     P ++P ++ ++++  A   ++ +  +  +R D +     
Sbjct: 209 NNVKTNTYEHKM-FDNEIIKCPIEVPKEVEEKIKETALNIYKVLNAKDFARIDMILSK-D 266

Query: 255 RKVFWLEINVQPGMTPVSI----------FPEMAAYAGYSFRELLLWMVEDA 296
              ++LE+N   G+T  S              MA  AG +  E +  ++E A
Sbjct: 267 NVPYFLELNTFAGLTMSSSKGEKHVHHGYMGYMAKAAGLTRGEFIGKIIESA 318


>gi|1255015|gb|AAB17898.1| D-alanine:D-alanine ligase [Enterococcus cecorum]
          Length = 195

 Score =  167 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 57/200 (28%), Positives = 94/200 (47%), Gaps = 15/200 (7%)

Query: 71  ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTMDSQHLIS--- 125
            LE L++PY  +G+LASA  MDK+ +K V+ + G+P  P + V    +  D Q +     
Sbjct: 1   FLETLKMPYVGTGVLASACGMDKIMTKYVLQAGGIPQVPYVPVLAMHWKQDPQLIFEHCE 60

Query: 126 ----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
                P  +KP   GSS+GI   +    +   L  + ++ +  + +IEQ   GIE+    
Sbjct: 61  GSLLYPMFVKPANMGSSVGISKAENRDELEAAL--NEAFLYDTRGIIEQ---GIEVAVLE 115

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241
           M +    +    V    FY Y  KY        +PA++P ++ ++ Q  A  A+  +G  
Sbjct: 116 MKNVRTTMAGEIVKDVAFYDYNSKYIDNKIVMQIPAQVPDEVQQKAQEYAKKAYTMLGGS 175

Query: 242 GISRSDFLFDPLSRKVFWLE 261
           G+SR DF       ++F  E
Sbjct: 176 GLSRCDFFLTNK-NELFLNE 194


>gi|167040420|ref|YP_001663405.1| D-alanine--D-alanine ligase [Thermoanaerobacter sp. X514]
 gi|300913706|ref|ZP_07131023.1| D-alanine--D-alanine ligase [Thermoanaerobacter sp. X561]
 gi|307723279|ref|YP_003903030.1| D-alanine--D-alanine ligase [Thermoanaerobacter sp. X513]
 gi|166854660|gb|ABY93069.1| D-alanine--D-alanine ligase [Thermoanaerobacter sp. X514]
 gi|300890391|gb|EFK85536.1| D-alanine--D-alanine ligase [Thermoanaerobacter sp. X561]
 gi|307580340|gb|ADN53739.1| D-alanine--D-alanine ligase [Thermoanaerobacter sp. X513]
          Length = 325

 Score =  167 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 69/292 (23%), Positives = 124/292 (42%), Gaps = 31/292 (10%)

Query: 25  ALEDAGFKVSQIDVDRSVGLV---LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81
           A+++AGF    I+           +   K DL FN             A LE+  IPY  
Sbjct: 38  AIKEAGFDSVLIEWKEDPLETYETIKKEKVDLIFNTS------SMKEVAFLEVFNIPYVG 91

Query: 82  SGILASALSMDKMRSKQVVSSCGVPVCPSILV-NRFTMDSQHLISPPYVIKPLKGGSSLG 140
           SG+    ++ DK   K +V+S G+P    ++  N   + S   +  P  +KP+ G  S G
Sbjct: 92  SGLDV--VATDKRMRKDIVASHGLPTPKYVIAENPQEIPSVDHLKFPLFVKPISGRGSAG 149

Query: 141 I---IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG---DASLDVTEIAV 194
           I    +I     +P  ++   +   G   LIE++++G E+T G++G      L + E+  
Sbjct: 150 IDEENIIYDKDKLP-QVVSKITEKIGQAALIEEFIEGKEVTVGIIGYKHPQVLPLLEVGY 208

Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
                 +YE K    N     P ++P ++ ++++  A   ++ +  +  +R D +     
Sbjct: 209 NNVKTNTYEHKM-FDNEIIKCPIEVPKEVEEKIKETALNIYKVLNAKDFARIDMILSK-D 266

Query: 255 RKVFWLEINVQPGMTPVSI----------FPEMAAYAGYSFRELLLWMVEDA 296
              ++LE+N   G+T  S              MA  AG +  E +  ++E A
Sbjct: 267 NVPYFLELNTFAGLTMSSSKGEKHVHHGYMGYMAKAAGLTRGEFIGKIIESA 318


>gi|297620263|ref|YP_003708400.1| hypothetical protein wcw_0017 [Waddlia chondrophila WSU 86-1044]
 gi|297375564|gb|ADI37394.1| conserved hypothetical protein [Waddlia chondrophila WSU 86-1044]
          Length = 642

 Score =  167 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 68/299 (22%), Positives = 127/299 (42%), Gaps = 22/299 (7%)

Query: 20  KACASALED-AGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ----AILEL 74
                AL+    F+ S  D  +++    +   P    N+    +  D  ++    A++E+
Sbjct: 320 NQMKEALKKIENFQFSCFDDHKNLIRKFSQNPPPFVMNLCDEGWNNDPFMELHPTALMEM 379

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLK 134
           L+IPYT +G    ++  +K   + +  S  V V   I ++     +      P +IKP  
Sbjct: 380 LKIPYTGAGPECLSICYNKSTVRAIAQSMDVHVPSEIWIDPSNHSAAIPSIFPALIKPAY 439

Query: 135 GGSSLGII---VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS----- 186
           G SS+GI    V+   + +        +      +LI++++DG E + GV+G+       
Sbjct: 440 GDSSIGITQNAVVYSAEELVTYFDNLKAQMPNIPILIQEFLDGREFSVGVIGNGVSLEVL 499

Query: 187 --LDVTEIAVPKS--DFYSYELKYSSLN--STHV--LPAKIPLDIYKEVQRLAFLAHQAI 238
             L+V    +P++      YE K+   +   TH+    A +   + +++   +    Q +
Sbjct: 500 PILEVDYSGLPENLPKILGYESKWHPESPYCTHIRYHQAHLDESLARDLIDTSINLFQRL 559

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
            CR  +R DF  D    +   LE N  PG         MA +AG  + ELL  +++ A+
Sbjct: 560 KCRDYARFDFRMDSQ-GEAKLLEANPNPGWCWDGKMALMAEFAGIQYHELLEKILKAAA 617


>gi|544147|sp|P35660|DDL_ANACE RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|142171|gb|AAA22065.1| D-alanine:D-alanine ligase [Anaplasma centrale]
          Length = 205

 Score =  167 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 64/192 (33%), Positives = 108/192 (56%), Gaps = 3/192 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S EREVSL+ GK  A AL   G + + +D++R     L  + PDL +N LHG
Sbjct: 15  IAVLCGGSSPEREVSLAGGKRIADALGRLGHRAAVVDLNRESAHQLLAMAPDLVYNALHG 74

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT-MD 119
             GEDG    +L++L + YTHS + AS++ MDK+ +K V+ S G+      ++ +   + 
Sbjct: 75  GQGEDGCASGLLDILGLAYTHSRVAASSVGMDKVLTKHVLKSLGIDFPEFSVLTKEEVLS 134

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
           ++ ++  P+VIKP+ GGS++G+  I          + + +     ++L+E+Y+ G E+  
Sbjct: 135 AKEVMPYPFVIKPICGGSTIGVHAIFSRSEYLDLSVHADALE--GRMLVEEYIPGQEVHT 192

Query: 180 GVMGDASLDVTE 191
            V    ++   E
Sbjct: 193 AVFLGRAIGTME 204


>gi|289524162|ref|ZP_06441016.1| D-ala D-ala ligase [Anaerobaculum hydrogeniformans ATCC BAA-1850]
 gi|289502818|gb|EFD23982.1| D-ala D-ala ligase [Anaerobaculum hydrogeniformans ATCC BAA-1850]
          Length = 353

 Score =  166 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 76/309 (24%), Positives = 143/309 (46%), Gaps = 27/309 (8%)

Query: 11  EREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDG---L 67
           E + S S+  A A  +E  GFK    + +  +   LA+ + D  FN+  G   E G    
Sbjct: 38  EYD-SQSTVDALAKEIESFGFKTLLCEQNEDLPSKLANQRLDFMFNIAEGIGTERGRESQ 96

Query: 68  VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI--- 124
           +  +LE L IPY+ S  ++ A+S+DK  +  V++   VPV P + + R   D +++    
Sbjct: 97  IPCLLESLGIPYSGSDPVSLAISLDKYLTNVVLNRENVPV-PFMTLFRSEDDLRNVDMLF 155

Query: 125 ---SPPYVIKPLKGGSSLGI---IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
              +  Y+ KP   GSS G+    + +    +  ++L+     +    +IE ++ GIE+T
Sbjct: 156 QDNNETYIAKPRWEGSSKGVFRDSICRNPNELKRNVLRIFE-RYRQPAIIEAFLPGIEIT 214

Query: 179 CGVMGDAS-------LDVTEIAVPKSDFYSYELKYSSLNST---HVLPAKIPLDIYKEVQ 228
            G++G+ S       + ++E        + Y L++         +  P  I   + +E  
Sbjct: 215 AGIVGNGSDARLLGMMKISERKPSDDGVFLYSLEHKRDWLECILYEGPEAINEKVRREAA 274

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP-VSIFPEMAAYAGYSFRE 287
            +A  A  A+  R I+R D   D    ++  ++IN  PG++P  S  P + + +G ++ +
Sbjct: 275 MIALDAFHALELRDIARIDMRMDGQ-GQLRVIDINPLPGLSPYYSDLPILYSLSGGNYHD 333

Query: 288 LLLWMVEDA 296
           L+  +   A
Sbjct: 334 LISQISRSA 342


>gi|297543611|ref|YP_003675913.1| D-alanine--D-alanine ligase [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
 gi|296841386|gb|ADH59902.1| D-alanine--D-alanine ligase [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
          Length = 325

 Score =  166 bits (421), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 65/292 (22%), Positives = 122/292 (41%), Gaps = 31/292 (10%)

Query: 25  ALEDAGFKVSQIDVDRSVGLV---LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81
           A+++AGF    I+           +   K DL FN             A LE+  IPY  
Sbjct: 38  AIKEAGFDSVLIEWKEDPLETYETIKKEKVDLIFNAS------SMKEVAFLEVFNIPYVG 91

Query: 82  SGILASALSMDKMRSKQVVSSCGVPVCPSILV-NRFTMDSQHLISPPYVIKPLKGGSSLG 140
           SG+    ++ DK   K +V+  G+P    ++  N   +     +  P  +KP+ G  S G
Sbjct: 92  SGLDL--VATDKRMRKDIVAFHGLPTPKYVVAKNSQEIPPVGHLRFPLFVKPISGRGSAG 149

Query: 141 I---IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG---DASLDVTEIAV 194
           I    ++     +P  +++  +   G   LIE++++G E+T G++G      L + E+  
Sbjct: 150 IDEENIVYDKDKLP-QVVRKITEKIGQAALIEEFIEGKEVTVGIIGYKHPQVLPLLEVGY 208

Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
                 +YE K    N     P ++  ++ ++++  A   ++ +  +  +R D +     
Sbjct: 209 NNVKTNTYEHKM-FDNEIIKCPMEVSKEVEEKIKETALNIYKVLNAKDFARIDMILSK-D 266

Query: 255 RKVFWLEINVQPGMTPVSI----------FPEMAAYAGYSFRELLLWMVEDA 296
              ++LE+N   G+T  S              MA  AG +  E +  ++E A
Sbjct: 267 NVPYFLELNTFAGLTMSSSKGEKHVHHGYMGYMAKAAGLTRGEFIGKIIESA 318


>gi|289577322|ref|YP_003475949.1| D-alanine--D-alanine ligase [Thermoanaerobacter italicus Ab9]
 gi|289527035|gb|ADD01387.1| D-alanine--D-alanine ligase [Thermoanaerobacter italicus Ab9]
          Length = 325

 Score =  165 bits (419), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 65/292 (22%), Positives = 121/292 (41%), Gaps = 31/292 (10%)

Query: 25  ALEDAGFKVSQIDVDRSVGLV---LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81
           A+++AGF    I+           +   K DL FN             A LE+  IPY  
Sbjct: 38  AIKEAGFDSVLIEWKEDPLETYETIKKEKVDLIFNAS------SMKEVAFLEVFNIPYVG 91

Query: 82  SGILASALSMDKMRSKQVVSSCGVPVCPSILV-NRFTMDSQHLISPPYVIKPLKGGSSLG 140
           SG+    ++ DK   K +V+  G+P    ++  N   +     +  P  +KP+ G  S G
Sbjct: 92  SGLDL--VATDKRMRKDIVAFHGLPTPKYVVAKNSQEIPPVGHLRFPLFVKPISGRGSAG 149

Query: 141 I---IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG---DASLDVTEIAV 194
           I    ++     +P  ++   +   G   LIE++++G E+T G++G      L + E+  
Sbjct: 150 IDEENIVYDKDKLP-QVVSKITEKIGQAALIEEFIEGKEVTVGIIGYKHPQVLPLLEVGY 208

Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
                 +YE K    N     P ++  ++ ++++  A   ++ +  +  +R D +     
Sbjct: 209 NNVKTNTYEHKM-FDNEIIKCPMEVSKEVEEKIKETALNIYKVLNAKDFARIDMILSK-D 266

Query: 255 RKVFWLEINVQPGMTPVSI----------FPEMAAYAGYSFRELLLWMVEDA 296
              ++LE+N   G+T  S              MA  AG +  E +  ++E A
Sbjct: 267 NVPYFLELNTFAGLTMSSSKGEKHVHHGYMGYMAKAAGLTRGEFIGKIIESA 318


>gi|624702|gb|AAA60991.1| ligase [Enterococcus casseliflavus]
          Length = 197

 Score =  165 bits (419), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 53/200 (26%), Positives = 101/200 (50%), Gaps = 11/200 (5%)

Query: 71  ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------I 124
           + EL+++PY   G+  SAL M+K    Q  ++ GV   P+IL+       + +       
Sbjct: 1   MFELMKLPYVGCGVAGSALCMNKWLLHQAAAAIGVQSAPTILLTNHANQQEQIEAFIQTH 60

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
             P   KP + GSS GI  +   + I   L +  ++ +   +L+++ + G+E+ CG++G+
Sbjct: 61  GFPVFFKPNEAGSSKGITKVTCVEEIASALKE--AFTYCSAVLLQKNIAGVEIGCGILGN 118

Query: 185 ASLDVTEIAVPK--SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            SL V           F+ +E KY  +++   +PA +P  I  +V+  A L ++++G +G
Sbjct: 119 DSLTVGACDAISLVDGFFDFEEKYQLISAKITVPAPLPETIETKVKEQAQLLYRSLGLKG 178

Query: 243 ISRSDFLFDPLSRKVFWLEI 262
           ++R DF       +++  EI
Sbjct: 179 LARIDFFVTDQ-GELYLNEI 197


>gi|67921325|ref|ZP_00514844.1| D-alanine--D-alanine ligase [Crocosphaera watsonii WH 8501]
 gi|67857442|gb|EAM52682.1| D-alanine--D-alanine ligase [Crocosphaera watsonii WH 8501]
          Length = 340

 Score =  165 bits (418), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 75/270 (27%), Positives = 125/270 (46%), Gaps = 28/270 (10%)

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ--AILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103
           +     DL    +   F   G+ Q  A+ +LL+IPY  +     AL+  K ++K +V + 
Sbjct: 78  ITEQNIDLVLPQM---FCLPGMTQYRALFDLLKIPYLGNKAELMALTAHKAKAKAIVRAT 134

Query: 104 GVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
           GV V    L+          + PP VIKP    +SLGI +++        L    ++ + 
Sbjct: 135 GVKVPYGELLRNSDT---PNLRPPVVIKPANADNSLGITLVRTMDEYQAGL--EKAFQYA 189

Query: 164 DQLLIEQYVD-GIELTCG-VMGDASL---DVTEIAVPKSD--FYSYELK----------Y 206
           D++L+E+Y++ G E+ CG ++ D  L    + E AV + +    +YE K          Y
Sbjct: 190 DEVLVEEYIELGREVRCGTIVKDGELISLPLEEYAVNQENNPIRNYEDKLKRDDTGELTY 249

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
           ++ +        I     + VQ +A   HQA+GCR  S  DF  DP   + ++LE  +  
Sbjct: 250 AAKDKKKAWIVDIKDPATRRVQEIAKQCHQALGCRHYSLFDFRIDPQ-GQPWFLEAGLYC 308

Query: 267 GMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             +P S+   MA   G S  ELL  ++++A
Sbjct: 309 SFSPKSVISMMAQAKGISLDELLEIVIKEA 338


>gi|32477963|ref|NP_870957.1| D-alanine-D-alanine ligase [Rhodopirellula baltica SH 1]
 gi|32448520|emb|CAD78035.1| probable D-alanine-D-alanine ligase [Rhodopirellula baltica SH 1]
 gi|327539377|gb|EGF25995.1| D-alanine-D-alanine ligase [Rhodopirellula baltica WH47]
          Length = 341

 Score =  165 bits (418), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 62/298 (20%), Positives = 121/298 (40%), Gaps = 31/298 (10%)

Query: 22  CASALEDAGFKVSQIDVDRSVGLV---LAHLKPDLAFNVLHGNFG---EDGLVQAILELL 75
               L   G +V  + +   +  +   L + +P++ + +L   +G    D  V + LEL+
Sbjct: 37  VCETLRGLGHEVLPLGIFDDLAPIRAALQNFQPNITYMLLEEFYGVVTYDFAVISYLELM 96

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV-NRFTMDSQHLISPPYVIKPLK 134
           + PY+        LS DK  SK+++    +      +  N   +     +  P  +K   
Sbjct: 97  QQPYSGCNPRGLMLSKDKALSKKLLMYHRIATPRFAVFPNGRAVRRPKKLEFPLFVKSTI 156

Query: 135 GGSSLGI---IVIKKDQSIPLDLLQSSSWNH---GDQLLIEQYVDGIELTCGVMGDASL- 187
             +S GI    ++  D+     L +  ++ H   G  +++EQY++G EL  GVMG+  L 
Sbjct: 157 EDASFGIAQASIVHNDE----ALAERVTFLHEKTGGDVIVEQYIEGRELYVGVMGNTRLV 212

Query: 188 --DVTEIAVPK---------SDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAH 235
                E+   K         +    ++ KY   +      A+ +     K + +L    +
Sbjct: 213 TFPAWEMDFGKMPDESARIATSRVKWDRKYQEKHDITCHAAEGLTEVQQKHIAKLCKRVY 272

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +A+   G +R D      + +V+ +E N  P +     F E A  AG  +  L+  ++
Sbjct: 273 RALHMSGYARMDLRMTA-TGEVYVIEANANPNIEYGEDFAESAEAAGIPYESLIQRIL 329


>gi|168699143|ref|ZP_02731420.1| D-ala D-ala ligase domain protein [Gemmata obscuriglobus UQM 2246]
          Length = 355

 Score =  164 bits (417), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 70/317 (22%), Positives = 136/317 (42%), Gaps = 32/317 (10%)

Query: 10  SEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDL---AFNVLHGNFGEDG 66
           SE ++  + G A    L  AGF  +++ ++     +L  LK D     FN+  G   +  
Sbjct: 24  SEHDIYDTVGDA-YKVLVAAGFVTTKLGINHDPQPLLDALKRDRPAAVFNLFEGIATQTS 82

Query: 67  L---VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                 A+LE L +P+T     A AL  DK+R+K V+++ GVP    ++V+   + +   
Sbjct: 83  TEVSAAALLEWLNVPFTGCPAAALALGRDKVRTKHVLAASGVPTPDYLIVDTLPVPTWCH 142

Query: 124 ISPPYVIKPLKGGSSLGI---IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              P ++KP    +S+GI    V+   + +   +  + +  +G   ++E+Y+ G EL   
Sbjct: 143 -GWPAIVKPAYQDASVGIEQSSVVTSQEQLQAQVAHTLA-TYGPPAIVERYIKGRELHVN 200

Query: 181 VM--------GDASLDVTEIAVPKSD-----FYSYELKYSSLNSTH-----VLPAKIPLD 222
           V+           +L  TEIA  K +      Y++  K+   +  +       P  +P  
Sbjct: 201 VIEPFGATGGEPVALAPTEIAFQKDEPGRWAVYTFAAKWHEQSDEYKAASLKFPVDLPAA 260

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAG 282
            +  + ++   + + +GCR  +R D   D        LE+N  P +  +++  +     G
Sbjct: 261 DFARLAQIVQRSFRVVGCRDYARVDVRMDA-GGAFHVLEVNPNPYLNSITLV-DGLKARG 318

Query: 283 YSFRELLLWMVEDASCL 299
            S+   ++ +   A   
Sbjct: 319 SSYERFVVELTLAALAR 335


>gi|326391834|ref|ZP_08213349.1| D-alanine--D-alanine ligase [Thermoanaerobacter ethanolicus JW 200]
 gi|325992119|gb|EGD50596.1| D-alanine--D-alanine ligase [Thermoanaerobacter ethanolicus JW 200]
          Length = 325

 Score =  164 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 68/292 (23%), Positives = 122/292 (41%), Gaps = 31/292 (10%)

Query: 25  ALEDAGFKVSQIDVDRSVGLV---LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81
           A+++AGF    I+           +   K DL FN             A LE+  IPY  
Sbjct: 38  AIKEAGFDSVLIEWKEDPLETYETIKKEKVDLIFNAS------SMKEVAFLEVFNIPYVG 91

Query: 82  SGILASALSMDKMRSKQVVSSCGVPVCPSILV-NRFTMDSQHLISPPYVIKPLKGGSSLG 140
           SG+    ++ DK   K +V+S G+P    ++  N   + S   +  P   KP+ G  S G
Sbjct: 92  SGLDV--VATDKRMRKDIVASHGLPTPKYVIAQNPQEIPSVDHLKFPLFAKPISGRGSAG 149

Query: 141 I---IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG---DASLDVTEIAV 194
           I    +I     +P  ++   +   G   LIE++++G E+T G++G      L + E+  
Sbjct: 150 IDEENIIYDKDKLP-QVVSKITDKIGQAALIEEFIEGKEVTVGIIGYKHPQVLPLLEVGY 208

Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
                 +YE K    N     P ++  ++ ++++  A   ++ +  +  +R D +     
Sbjct: 209 NNVKTNTYEHKM-FDNEIIKCPMEVSKEVEEKIKETALNIYKVLNAKDFARIDMILSK-D 266

Query: 255 RKVFWLEINVQPGMTPVSI----------FPEMAAYAGYSFRELLLWMVEDA 296
              ++LE+N   G+T  S              MA  AG +  E +  ++E A
Sbjct: 267 NVPYFLELNTFAGLTMSSSKGEKHVHHGYMGYMAKAAGLTRGEFIRKIIESA 318


>gi|77165687|ref|YP_344212.1| hypothetical protein Noc_2222 [Nitrosococcus oceani ATCC 19707]
 gi|254434399|ref|ZP_05047907.1| hypothetical protein NOC27_1330 [Nitrosococcus oceani AFC27]
 gi|76884001|gb|ABA58682.1| conserved hypothetical protein [Nitrosococcus oceani ATCC 19707]
 gi|207090732|gb|EDZ68003.1| hypothetical protein NOC27_1330 [Nitrosococcus oceani AFC27]
          Length = 354

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 76/314 (24%), Positives = 130/314 (41%), Gaps = 25/314 (7%)

Query: 8   ISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGL 67
            S+E   ++   K     L D  ++ + +D   ++   L    PD   N     +     
Sbjct: 31  FSTEDLEAIDRAKEALGELRD--YQFTYLDNHSALLPQLIADPPDFVLNFCDTGYKNRAR 88

Query: 68  ----VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
               V A LE+L IPY+ +      L  DK   + V  + GVPV     V+   ++   L
Sbjct: 89  QELHVPAFLEMLGIPYSGARPACLGLCYDKSLVRSVAKTHGVPVPAETFVHGNDLNGAIL 148

Query: 124 ISPPYVIKPLKGGSSLGIIVIK--KDQSIPLDLLQSSSWNHGD-QLLIEQYVDGIELTCG 180
            + P +IKP +G  S+GI       D+      +   +    +  LLI++++ G E + G
Sbjct: 149 KNFPALIKPNRGDGSVGITENSLVYDEPQAHAYINKLAMEFPNCDLLIQEFLPGDEYSVG 208

Query: 181 VMGDASLDVTEIAVPKSDF-----------YSYELKYSSLN--STHVLPAK--IPLDIYK 225
           ++G+ S     + + K D+            +Y  K  S +   T +  AK  +   + +
Sbjct: 209 LLGNPSSGFKILPILKVDYSRLAAHRLPPILAYASKVDSASPYWTDIQYAKAAMDEGLRQ 268

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285
            +     L  + +GCR  +R DF  D    +V  LE+N  P          MA +AGY +
Sbjct: 269 RLVGYCRLLFERLGCRDYARFDFRADVQ-GEVKLLEVNPNPAWCWDGKLNLMAGFAGYRY 327

Query: 286 RELLLWMVEDASCL 299
            ELL W+++ A   
Sbjct: 328 GELLEWILQAAQAR 341


>gi|108762853|ref|YP_634088.1| D-ala D-ala ligase domain-containing protein [Myxococcus xanthus DK
           1622]
 gi|108466733|gb|ABF91918.1| D-ala D-ala ligase domain protein [Myxococcus xanthus DK 1622]
          Length = 376

 Score =  163 bits (414), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 68/307 (22%), Positives = 133/307 (43%), Gaps = 30/307 (9%)

Query: 12  REVSLSSGKACASALEDAG--FKVSQIDVDR-SVGLVLAHLKPDLAFNVLHG----NFGE 64
           R VS     + A AL       +   I+ DR      L   +PDL  N+       + GE
Sbjct: 45  RVVS-----SMADALNRGDTLAEPLAIEGDRLDFMDTLRRCQPDLVVNLCESLAADSRGE 99

Query: 65  DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI 124
              +  +L++L + YT S  L+  L++ K ++K+V+++ GV   P  +V R        +
Sbjct: 100 -MAIPCLLDVLGLAYTGSSALSLGLALHKPKAKEVLTARGVSTPPFHVVERLEDALAVDL 158

Query: 125 SPPYVIKPLKGGSSLGI---IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
             P ++KP +  +S+G+    V+ +  ++      +         L+EQ++ G E+   +
Sbjct: 159 PWPLIVKPAREDASMGVTSESVVHERAALVRA-CDAVLREFHQPALVEQFIPGREIYVPL 217

Query: 182 MGDA---SLDVTEIA-----VPKSDFYSYELKYSSLNSTHVLP----AKIPLDIYKEVQR 229
           +G+    +L +TEI        + +  SY  K+ + ++ +        ++  ++     +
Sbjct: 218 LGNRPRQALPLTEIVFGRTFEDRPNIVSYNAKWEAASAEYRDTTSGLCRLDANLESRCVQ 277

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           +A  A  A+ C+   R D    P     + ++IN    + P + F + A  AG  +  L 
Sbjct: 278 VALEAFAALDCQDYGRVDLRVSP-EGVPYVIDINPNCDLHPSAGFAKAALAAGMDYPALA 336

Query: 290 LWMVEDA 296
             +VE A
Sbjct: 337 SRLVEVA 343


>gi|313675049|ref|YP_004053045.1| d-alanine--d-alanine ligase [Marivirga tractuosa DSM 4126]
 gi|312941747|gb|ADR20937.1| D-alanine--D-alanine ligase [Marivirga tractuosa DSM 4126]
          Length = 894

 Score =  163 bits (414), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 76/405 (18%), Positives = 142/405 (35%), Gaps = 112/405 (27%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALED-------------------------------- 28
           + V+MGG S+ER +S+ SG+     L                                  
Sbjct: 476 VGVIMGGFSTERHISVESGRNIYEKLSSSEKYLPIPIFLSGNEDQHELYVLPINIMLKDN 535

Query: 29  --------AGFKVSQI---------DVDRSVG----LVLAHLK-------PDLAFNVLHG 60
                     ++V  I         ++         +VL  +         D+ F  LHG
Sbjct: 536 ADDIKDKIQNYEVHPIISQIKFESSEITEKYVGIENIVLKKISYHDLPDIIDVTFIALHG 595

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG VQA LE L IPY  S + +S ++++K  + +++ + G+ V    LV      S
Sbjct: 596 RPGEDGAVQAELEKLNIPYNGSDVESSKITINKYDTNEILKNAGISVADHRLVFENKWQS 655

Query: 121 ---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIP-------------------- 151
                    +  +S P + KP   G S  +  IK    +                     
Sbjct: 656 NKEAEIAAIEEQLSYPLIAKPADDGCSSAVKKIKNKAELEAFAGMMFRPQAEFIEDLANI 715

Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIE------LTCGVM----GDASLDVTEIAVPK----S 197
           L L ++  +   +  L+E+ ++  +      +T G++     D S++       +     
Sbjct: 716 LKLKKNEEFPQKNFFLLEELIEKKDAKYFLEITGGLLTHFKEDGSIEYEIFEPSEALAGG 775

Query: 198 DFYSYELKYSSLNSTHVLPAKIPLD------IYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
           +  S E K+ +    ++ PA+          + ++V+       + +   G +R D    
Sbjct: 776 EVLSLEEKFLAGEGQNITPARYTPQAENYKVVAEQVKATLKKTAEVLNITGYARIDAFVR 835

Query: 252 PLSR---KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
                  +   +E+N  PGMTP +      A  GY   + +  ++
Sbjct: 836 VYEDLSVETIIIEVNSLPGMTPATCIFHQTAINGYKPYDFIDKIL 880



 Score =  120 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 53/228 (23%), Positives = 84/228 (36%), Gaps = 68/228 (29%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI------------------------ 36
           + +  GG S ERE+S + G+     L  + F    I                        
Sbjct: 3   IGIFFGGQSREREISFAGGRTVYDNLNKSIFDAVPIFIDSKGHFVLLDWQYIYKGTIRDF 62

Query: 37  ---------------------------DVDRSVGLVLAHLKP-------DLAFNVLHGNF 62
                                      D D+ +  V   + P       D AF  LHG +
Sbjct: 63  YPPVNFLPKSDLPVQIYAESLKNLSDEDWDKLIAEVGQKINPSDFKKHIDFAFLALHGPY 122

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ- 121
           GEDG +Q ILE   IP++ +GIL SA+ + K+  +Q +   G     S ++N+   + Q 
Sbjct: 123 GEDGNIQGILEWNGIPFSGAGILPSAIGISKIAQRQFLQQAGFEGPKSRILNQNDWNHQP 182

Query: 122 ---------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160
                      +  P VIK    GSS+G+ ++ +D     + L   S+
Sbjct: 183 HENIYQNLKKELGLPLVIKAPHQGSSIGVSILNEDDPNKFEKLVQKSF 230



 Score =  105 bits (264), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 40/148 (27%), Positives = 65/148 (43%), Gaps = 7/148 (4%)

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDA-----SLDVTEIAVPKSDFYSYELKYSSLNST 212
            + +  + LLIE +++G E +C V+ D      +L  TEI   K D + Y  KY    S 
Sbjct: 297 KAIDSENSLLIESFIEGKEFSCIVIQDENERPIALPPTEIRKGK-DVFDYRSKYLPGISR 355

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
            + P   P DI ++++       +A+     +R D        KVF  + N   GM P S
Sbjct: 356 KITPIDAPQDIIEKIRSQCAALFKALQIDVYARIDGFITK-EGKVFLNDPNTTSGMLPSS 414

Query: 273 IFPEMAAYAGYSFRELLLWMVEDASCLR 300
            F   AA  G +  + L +++  +   R
Sbjct: 415 FFFHQAAEIGLNPSQFLSYIIRTSLQAR 442


>gi|290473195|ref|YP_003466060.1| putative D-alanine--D-alanine ligase [Xenorhabdus bovienii SS-2004]
 gi|289172493|emb|CBJ79260.1| putative D-alanine--D-alanine ligase [Xenorhabdus bovienii SS-2004]
          Length = 365

 Score =  162 bits (411), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 76/334 (22%), Positives = 139/334 (41%), Gaps = 47/334 (14%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFK-----VSQIDVDRSVG------------LV 45
           ++ GGIS E   S+SS      +  +  F      +   D D SV               
Sbjct: 16  IIFGGISPEHPASVSSFDNLIKSFRELNFDRNLNSIYFFDKDGSVLYNAYTPYISPYDFT 75

Query: 46  LAHLKPDLA-------------FNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
            +  K DL               N+LHGN GEDG +Q + +  +I  T   +L S+LSM 
Sbjct: 76  HSGDKIDLYTAIKRMSKQSEFHINLLHGNLGEDGHIQGVAKYFKIKGTFGSVLPSSLSMS 135

Query: 93  KMRSKQVVSSC--GVPVCPSILVNRFTMDSQHLI---SPP---YVIKPLKGGSSLGIIVI 144
           K      ++S    +    ++L+    ++    +   + P    VIKP   G+SL     
Sbjct: 136 KYHMSHYINSLLPSLRSPKTLLLTEGNLEKAFSLISDNFPEEKIVIKPNSLGASLFTNKY 195

Query: 145 KKDQSIPLDLLQSSS--WNHGDQLLIEQYVDGIELTCGVM----GDASLDVTEIAVPKSD 198
              ++    +L +    + +    L++ ++ G E + G +       +L+V EI   K+ 
Sbjct: 196 VNLENEKKSILDNLKNIFEYDRFALVQAFIKGKEYSVGCIRIEGKAIALNVVEIIT-KNG 254

Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
           F+ ++ K+    +  +L  +   +I + ++ L+    ++ G   + R DF+      +++
Sbjct: 255 FFGHDEKHRINKAEEILLIQ-DSEITRTLKDLSIKIFESTGYEFMCRFDFIVTESE-EIY 312

Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +LE N  PGM   SIFP+M      S   L + +
Sbjct: 313 FLESNPIPGMMKNSIFPKMLKGHKLSIPGLFIHL 346


>gi|172038031|ref|YP_001804532.1| D-alanine--D-alanine ligase [Cyanothece sp. ATCC 51142]
 gi|171699485|gb|ACB52466.1| D-alanine--D-alanine ligase [Cyanothece sp. ATCC 51142]
          Length = 340

 Score =  162 bits (411), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 78/270 (28%), Positives = 127/270 (47%), Gaps = 28/270 (10%)

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ--AILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103
           +A    DLA   +   F   G+ Q  ++L+LL IPY  +     AL+ +K ++K +V S 
Sbjct: 78  IAEQNIDLALPQM---FCIPGMTQYRSLLDLLNIPYLGNTAELMALTANKAKAKAIVRSM 134

Query: 104 GVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
           GV V    L+ +        + PP VIKP    +SLG+ ++K        L +  ++ + 
Sbjct: 135 GVKVPYGELLRQGNT---LNLRPPVVIKPDNSDNSLGVTLVKTMDEYEAGLKK--AFEYA 189

Query: 164 DQLLIEQYVD-GIELTCG-VMGDASL---DVTEIAVPKSD--FYSYELK----------Y 206
           DQ+L+E+Y++ G E+ CG ++ +  L    + E AV   D    ++E K          Y
Sbjct: 190 DQVLVEEYIELGREVRCGTIVKNGELISLPLEEYAVNSKDHPIRNHEDKLKKDDAGELTY 249

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
           ++ +              + VQ +A   HQA+GCR  S  DF  DP   + ++LE  +  
Sbjct: 250 AAKDKKKAWIVDSNDPATRRVQEIAKQCHQALGCRHYSLFDFRIDPQ-GQAWFLEAGLYC 308

Query: 267 GMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             +P S+ P MA   G S  ELL   + +A
Sbjct: 309 SFSPKSVIPMMAQAKGISLNELLEIAINEA 338


>gi|37544103|gb|AAQ93036.1| D-alanine-D-alanine ligase B [Rhizobium etli]
          Length = 136

 Score =  162 bits (410), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 71/105 (67%), Positives = 84/105 (80%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSER VSLSSGKACA ALE  GFKV+ +DV R V   LA LKPD+ FN LHG
Sbjct: 32  VAVLMGGFSSERPVSLSSGKACAEALEAEGFKVTTLDVARDVSEKLAALKPDVVFNALHG 91

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV 105
            FGEDG +Q ILE LEIPYTHSG+LASAL+MDK ++K+V ++ G+
Sbjct: 92  PFGEDGTIQGILEYLEIPYTHSGVLASALAMDKGKAKRVAAAAGI 136


>gi|480501|pir||S36974 hypothetical protein 8 (atpB 5' region) - Synechococcus sp.  (PCC
           6716) (fragment)
 gi|49229|emb|CAA49884.1| unnamed protein product [Synechococcus sp.]
          Length = 218

 Score =  162 bits (410), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 56/215 (26%), Positives = 90/215 (41%), Gaps = 39/215 (18%)

Query: 1   MAVLMGGISSEREVSLSSGKACA----SALEDAGFKVSQIDVDRSVGLVLAH-------- 48
           + +L GG S E EVS+ S  A A      L    ++V  I + +                
Sbjct: 6   VGLLFGGRSREHEVSVVSAAAIAQAFADPLNGDRYEVVPIYIQKDGRWRCTETVSAPAPS 65

Query: 49  -------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
                           D+ F +LHG  GEDG +Q +LE+++ PY  SG+ ASA+ MDK+ 
Sbjct: 66  LDNQSLWSFPAVAETIDVWFPILHGPNGEDGTIQGLLEMMQRPYVGSGVAASAIGMDKIL 125

Query: 96  SKQVVSSCGVPVCPSILVNRFTMDS------------QHLISPPYVIKPLKGGSSLGIIV 143
            K    + G+P    + ++R  + S            +  +  P  +KP   GSS+GI  
Sbjct: 126 MKTFFGAVGLPQVQYVAISRSELWSDPCRYRQVCDRIETELGYPCFVKPANLGSSVGISK 185

Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            K  Q +   L  ++      ++++E  V   EL 
Sbjct: 186 AKNRQQLTTALETAA--ELDRRIIVEAGVVARELE 218


>gi|218506497|ref|ZP_03504375.1| D-alanine--D-alanine ligase [Rhizobium etli Brasil 5]
          Length = 111

 Score =  161 bits (409), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 73/106 (68%), Positives = 85/106 (80%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSER VSLSSGKACA+ALE  GFKV+ IDV R V   LA LKPD+ FN LHG
Sbjct: 6   VAVLMGGFSSERPVSLSSGKACAAALEAEGFKVTCIDVARDVSEKLAALKPDVVFNALHG 65

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP 106
            FGEDG +Q ILE LEIPYTHSG+LASAL+MDK ++K V ++ G+P
Sbjct: 66  PFGEDGTIQGILEYLEIPYTHSGVLASALAMDKDKAKLVAAAAGIP 111


>gi|134081480|emb|CAK46493.1| unnamed protein product [Aspergillus niger]
          Length = 335

 Score =  160 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 80/300 (26%), Positives = 125/300 (41%), Gaps = 25/300 (8%)

Query: 19  GKACASALEDAGFKVSQIDVDRSVGLVLAHLK---PDLAFNVLHGNFG--EDGLVQAILE 73
            +  A+AL++ G +V  +    S+   LAH +    DLAFN   G  G   +G V A+LE
Sbjct: 37  AEHIAAALKNLGHEVVLVPDIHSLVKRLAHGEGSTWDLAFNTTEGLHGLAREGQVPALLE 96

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS-PPYVIKP 132
             +IP+T S      L +DK R+K  +          + + R +  S+ L+S  P  +KP
Sbjct: 97  AYQIPFTFSDAATMTLCLDKGRTKVSLD-------EILSMIRMSRHSETLLSQYPLFVKP 149

Query: 133 LKGGSSLGIIVIKKDQSIP-LDLLQSSSWNHGDQ---LLIEQYVDGIELTCGVMGDAS-- 186
           L  GSS GI    K +SI  L  + +S  +       +L+E+Y+ G E T G++G     
Sbjct: 150 LAEGSSKGIGATNKIKSIESLCDVVNSLRDSSPSSLGVLVEKYLPGREFTVGILGTGEDA 209

Query: 187 --LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244
             + V EI                      +             + A  A   + CR   
Sbjct: 210 WVVGVDEIYGAAKSRRILTPTDDWAGEADEIKIGWDDQEADLACQTALRAWTVLRCRDGG 269

Query: 245 RSDFLFDPLSRKV-FWLE--INVQPGMTPV-SIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           R D   D     V   +E  IN   G+ P  S  P +A +   S+ EL+ ++++ A   R
Sbjct: 270 RIDIRMDHSGSPVAHVMEIQINPLAGLLPHWSQLPMIAEHNNVSYNELIEYILKSALQRR 329


>gi|170702583|ref|ZP_02893457.1| D-alanine--D-alanine ligase [Burkholderia ambifaria IOP40-10]
 gi|170132517|gb|EDT00971.1| D-alanine--D-alanine ligase [Burkholderia ambifaria IOP40-10]
          Length = 357

 Score =  160 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 62/334 (18%), Positives = 131/334 (39%), Gaps = 46/334 (13%)

Query: 1   MAVLMGGISSEREVSLSS---GKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD----- 52
           ++++ GG S E   SL S    +    +  +            +   +++H   D     
Sbjct: 7   VSIIFGGKSPEYSASLESFRHVREVVQSSPELDIDYIYYVNQDNKVAIVSHRPRDTLEDY 66

Query: 53  ---------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSM 91
                                   N+LHGN+GEDG +Q    ++ IP +   +L ++L+M
Sbjct: 67  LRRTDVMPYWMALGQMGARQTFVLNLLHGNYGEDGCIQGAASMMSIPGSFGPVLPASLAM 126

Query: 92  DKMRSKQVVSSCGV--PVCPSILVNRFTMDSQHLI---SPP---YVIKPLKGGSSLGIIV 143
            K    + V+       +  +++++   +   H     + P    V+KP   G+SL    
Sbjct: 127 SKYHMSRYVAKAHPSARMPRTLILSDGDIGIAHKRITDAFPEGDVVMKPNSLGASLFTQR 186

Query: 144 IKKDQSIPLDLL--QSSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKS 197
               +     +    ++   +    L+++Y+ G E + G   +     +L V  I     
Sbjct: 187 FTMRREAVDAVRSNLAAILEYDRHALVQEYIAGDEYSVGCFQEHDVVTALPVVRIETAD- 245

Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
            F+ +  K+        +  +   ++ + ++RL+    + +G R + R DF+    +  +
Sbjct: 246 GFFGHAQKHRHGKVRETVVFE-DDEVTRAIKRLSVDIFRDVGFRNMCRFDFIVT-RNGDI 303

Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
            +LE N  PG+   SIFP+M A    +  +++  
Sbjct: 304 VFLEANPIPGLMKNSIFPKMLAAIDLTLVDMVRQ 337


>gi|183221182|ref|YP_001839178.1| putative D-alanine--d-alanine ligase [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Paris)']
 gi|189911273|ref|YP_001962828.1| D-alanine--D-alanine ligase [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167775949|gb|ABZ94250.1| D-alanine--D-alanine ligase [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167779604|gb|ABZ97902.1| Putative D-alanine--d-alanine ligase [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Paris)']
          Length = 329

 Score =  160 bits (405), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 74/287 (25%), Positives = 128/287 (44%), Gaps = 25/287 (8%)

Query: 24  SALEDAGFKVSQIDVDRSVGLVLA-----HLKPDLAFNVLHG--NFGEDGLVQAILELLE 76
             ++  G+ V  ++    +   LA     + K  + +N + G  +   +  + A+ E L 
Sbjct: 33  KTIQSLGYDVVVLNHPTEITSALAGIPKSNRKNWIVWNFIEGYLSPSREAYIPALCEYLG 92

Query: 77  IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGG 136
           IP+T S      L++DK ++K  ++S G+P   S L++  +      IS P  +KP   G
Sbjct: 93  IPHTGSHAAVQTLTLDKYKTKLYLASFGIPTLVSQLIDSES--ELPRISYPLFVKPNGEG 150

Query: 137 SSLGII---VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD----ASLDV 189
           SSLGI    VI        D            LL+E Y+ G E+T G+MG+      L +
Sbjct: 151 SSLGITDANVIHSKDDW--DTQVPKLLETFSPLLVEPYLSGEEVTVGIMGNQGNYQVLPI 208

Query: 190 TEIAVPKSDFY-SYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
             +  P   ++   + K   L S   L   +P  +  +++ ++    + +G  G  R DF
Sbjct: 209 AYVKTPSGVYHEGIKSKSEFLES---LDFDLPNHLCSQIESISLQIAERLGSSGYLRIDF 265

Query: 249 LFDPLSRKVFWLEINVQPGMTPV-SIFPEMAAYAGYSFRELLLWMVE 294
                + K F+LE N  PG + + S  P +   +G S+ ELL + +E
Sbjct: 266 KL--ENEKPFFLEANATPGFSHIYSTLPLLWERSGRSYSELLQYSLE 310


>gi|195940920|ref|ZP_03086302.1| D-alanyl-alanine synthetase A [Escherichia coli O157:H7 str.
           EC4024]
          Length = 147

 Score =  159 bits (404), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 45/133 (33%), Positives = 76/133 (57%), Gaps = 4/133 (3%)

Query: 167 LIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYELKYSSL-NSTHVLPAKIPLDI 223
           ++EQ ++G E+ C V+G+     +     V  SDFYSY+ KY     +  V+PA +  D+
Sbjct: 1   MVEQGINGREIECAVLGNDFPQASTCGEVVLNSDFYSYDTKYIDDKGAQVVVPAALDPDV 60

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283
              ++ +A  A QA+GC G++R D    P   +V   EIN  PG T +S++P++   +G 
Sbjct: 61  NDRIRAIAIEAWQALGCSGMARVDVFLTP-DNEVVINEINTLPGFTNISMYPKLWQASGI 119

Query: 284 SFRELLLWMVEDA 296
           S++EL+  ++E A
Sbjct: 120 SYQELITRLIELA 132


>gi|326330649|ref|ZP_08196953.1| putative D-alanine--D-alanine ligase [Nocardioidaceae bacterium
           Broad-1]
 gi|325951490|gb|EGD43526.1| putative D-alanine--D-alanine ligase [Nocardioidaceae bacterium
           Broad-1]
          Length = 371

 Score =  159 bits (403), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 81/344 (23%), Positives = 137/344 (39%), Gaps = 61/344 (17%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL---AHLKPDL------ 53
           ++ GG S+E ++S+ +G      L  AG +V+ +   RS    L        D       
Sbjct: 8   IVFGGPSAEHDISILTGLQAERVLSGAGVEVTCLYWARSDKWFLVPAKQEARDFLGGEPK 67

Query: 54  ---------------------------------AFNVLHGNFGEDGLVQAILELLEIPYT 80
                                              +  HG  GE G +Q + EL  +  T
Sbjct: 68  GSKAVEFRLGTEKGDGFYTVGGFGGGKRLETGPILSAFHGGAGEAGGIQWLFELAGLKAT 127

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLG 140
            +   ++AL MDK+    V+ + G+P     L++R+   +      PY++KP  GGSS+G
Sbjct: 128 GATPASAALGMDKLAFGAVMLNAGLPSLQRELLSRY---AAPSFEGPYIVKPRFGGSSIG 184

Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP----K 196
           I V+  D    L LL +S       ++     D  +L   V     + V+++  P    +
Sbjct: 185 IEVV-DDYETGLALLNTSPHLRAGAVVEPYRPDLFDLNASVRTAPEIAVSDVERPLRSDE 243

Query: 197 SDFYSYELKYSSLN----STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
           +  Y Y  KY   +    S    PA++   + K+++ LA    +  G  GI R DF    
Sbjct: 244 AKMYDYSAKYVHTDGLSSSPREFPAQVEESVTKQIKDLAVRVVELTGLTGILRIDF-LSD 302

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              +VF  E+N  PG   + ++P+  A       E+L   + +A
Sbjct: 303 GKGEVFINEVNSIPGALSLYLWPDTPA------SEVLTSAIAEA 340


>gi|300113563|ref|YP_003760138.1| hypothetical protein Nwat_0871 [Nitrosococcus watsonii C-113]
 gi|299539500|gb|ADJ27817.1| conserved hypothetical protein [Nitrosococcus watsonii C-113]
          Length = 364

 Score =  159 bits (403), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 69/307 (22%), Positives = 120/307 (39%), Gaps = 31/307 (10%)

Query: 23  ASALEDAG--------FKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGL----VQA 70
             A++ A         ++ + +D   ++   L    P+   N     +         + A
Sbjct: 36  LEAIDRAKEALGELSDYQFTYLDNHSALLPQLIANPPNFVLNFCDTGYKNQAQQELHIPA 95

Query: 71  ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVI 130
           +LE+L IPY+ +G     L  DK   + V  + GVPV     V+   ++   L   P +I
Sbjct: 96  LLEMLGIPYSGAGPTCLGLCYDKSLVRSVAKTHGVPVPAETFVHGNDLNGAILKDFPALI 155

Query: 131 KPLKGGSSLGIIVIK--KDQSIPLDLLQSSSWNHGD-QLLIEQYVDGIELTCGVMGDASL 187
           KP +G  S+GI       D+      +   +       LLI++++ G E + G++G+ S 
Sbjct: 156 KPNRGDGSVGITENSLVYDEPQAHAYINKLAMEFPSCDLLIQEFLPGDEYSVGLLGNPSS 215

Query: 188 DVTEIAVPKSDF-----------YSYELK----YSSLNSTHVLPAKIPLDIYKEVQRLAF 232
               + + K D+            +Y  K               A I   + + +     
Sbjct: 216 GFKILPILKVDYSRLAAHRLPPILAYASKVDPASPYWTDIKYGKAAIDEGLRQRLVGYCR 275

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           L  + +GCR  +R DF  D    +V  LE+N  P          M  +AGY + ELL W+
Sbjct: 276 LLFERLGCRDYARFDFRADAQ-GEVKLLEVNPNPAWCWDGKLNLMVGFAGYRYGELLEWI 334

Query: 293 VEDASCL 299
           ++ A   
Sbjct: 335 LQAAQAR 341


>gi|1262411|emb|CAA94438.1| D-alanine:D-alanine ligase-related protein [Streptococcus equinus]
          Length = 211

 Score =  158 bits (401), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 51/183 (27%), Positives = 90/183 (49%), Gaps = 9/183 (4%)

Query: 49  LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
            + D+AF VLHG  GEDG +Q +  L  IPY    I +SA  MDK  +  +  + G+ V 
Sbjct: 30  RRIDVAFPVLHGKCGEDGAIQGLFVLSGIPYVGCDIQSSAACMDKSLAYILTKNAGIAVP 89

Query: 109 PSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168
              ++++        ++ P  +KP + GSS G+  +   + +   +   ++  +  ++LI
Sbjct: 90  EFQMIDKGDKPEAGTLTYPVFVKPARSGSSFGVTKVNGTEELNAAI--EAAGQYDGKILI 147

Query: 169 EQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSY---ELKYSSLNSTHVLPAKIPL 221
           EQ + G E+ C VMG+       +V +I +    F  +   E +  S N+   +PA IP+
Sbjct: 148 EQAISGCEVGCAVMGNEDDLIVGEVDQIRLSHGIFRIHQENEPEKGSENAMITVPADIPV 207

Query: 222 DIY 224
           +  
Sbjct: 208 EER 210


>gi|328774412|gb|EGF84449.1| hypothetical protein BATDEDRAFT_34316 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 790

 Score =  158 bits (401), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 69/346 (19%), Positives = 130/346 (37%), Gaps = 55/346 (15%)

Query: 3   VLMGGIS---------SEREVSLSSGKACASALEDAGF---KVSQIDVDRSVGLVLAHLK 50
           VLMG  S         +  +  + + K    AL D G+   ++  ID  + +   L+   
Sbjct: 435 VLMGDTSMPCVGKLGDTWNQEDIETRKQLVKALYDIGYSDEQLEIIDTHKDLVHTLSEKS 494

Query: 51  PDLAFNVLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP 106
                N     +  D      + A+L++  I Y+ +G     +  DK        + GVP
Sbjct: 495 VSFVLNFCDEGYQNDALKEMHIPALLDMANIQYSGAGPNCLTICYDKGLVNSTARTLGVP 554

Query: 107 VCPSIL------------VNRFTMDSQHLISPPYVIKPLKGGSSLGI---IVIKKDQSIP 151
               +             +N+     +  I  P  IKP+KG +SLGI    +I     + 
Sbjct: 555 TPREMTYLSDVATSAVADLNKVDQLIREQILYPAFIKPIKGDNSLGITSRSIIHNKAELA 614

Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDF-----------Y 200
             + + S     D +L+++Y+ G E   G++G++          K D+            
Sbjct: 615 SYMDELSGIGIRD-VLVQEYLTGTEYGIGMVGNSETGFHFFPTLKVDYSKIVEKQLEPIL 673

Query: 201 SYELKYS----SLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL------- 249
            YE K+       +    + A +  ++  ++++   +  +  GCR  +R DF        
Sbjct: 674 GYESKWDPSSPYWSDISYVAANLSAEVDNDLRKACVVLWKRFGCRDYARFDFRSDVGTGD 733

Query: 250 -FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             D L   +  LE+N  PG         MA   G  ++++L  +++
Sbjct: 734 NKDGLGGTIKLLEVNPNPGWCWDGKLAYMAKLDGIEYKDMLRMIIQ 779


>gi|289524161|ref|ZP_06441015.1| putative D-ala D-ala ligase domain protein [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
 gi|289502817|gb|EFD23981.1| putative D-ala D-ala ligase domain protein [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
          Length = 344

 Score =  158 bits (400), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 61/300 (20%), Positives = 125/300 (41%), Gaps = 30/300 (10%)

Query: 22  CASALEDAGFKVSQIDVDRS-------VGLVLAHLKPDLAFNVLHGNFGEDGL----VQA 70
            A AL   G K   + V +        +   +    PD  FN+  G F +D         
Sbjct: 27  VAKALASVGHKTYVLGVTKKDLRSFDVLENKIKRFWPDCIFNLFEG-FSDDSKKEVLFAT 85

Query: 71  ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVI 130
            LE L IP+T +G  A   S+DK+ +K++++   VP    + +   + D +  +  P  I
Sbjct: 86  FLESLNIPFTGNGSAALQASLDKLMAKKLLTKKNVPAPKGLCLESTSFDLEG-LPCPAFI 144

Query: 131 KPLKGGSSLGI---IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL 187
           KP     S+GI    ++     +   + +         +++E++++G E   G++G    
Sbjct: 145 KPRFEDGSVGIDDSSLVTSKSQLKEAVAR-KILTFPAGIIVEEFLEGREFNVGLIGLPPY 203

Query: 188 DVTEIAVPKSDFY-------SYELKYSSLNSTH----VLPAKIPLDIYKEVQRLAFLAHQ 236
           +V  I++   + Y        Y  K+ + +  +      P  +P ++   + R+A  A  
Sbjct: 204 EVAGISMIDYEDYPEALPFLDYGAKWDTKSPGYRIAPENPKFLPREMKDSLIRMAKRAGI 263

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           A+ C+G  R D        +++ +++N  P +   S        +G  +  L+ ++++ A
Sbjct: 264 ALSCKGYFRVDMR--ERDGEIYVIDVNPNPDLNVESGLANQCRRSGLPYEALISYIIDTA 321


>gi|197111776|gb|ACH43043.1| D-alanine:D-lactate ligase VanB2 [Enterococcus faecium]
          Length = 202

 Score =  157 bits (399), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 51/181 (28%), Positives = 90/181 (49%), Gaps = 9/181 (4%)

Query: 49  LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
            + D+AF VLHG  GEDG +Q +  L  IPY    I +SA  MDK  +  +  + G+ V 
Sbjct: 23  RRIDVAFPVLHGKCGEDGAIQGLFVLSGIPYVGCDIQSSAACMDKSLAYILTKNAGIAVP 82

Query: 109 PSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168
              ++++        ++ P  +KP + GSS G+  +   + +   +   ++  +  ++LI
Sbjct: 83  EFQIIDKGDKPEAGALTYPVFVKPARSGSSFGVTKVNGTEELNAAI--EAAGQYDGKILI 140

Query: 169 EQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSY---ELKYSSLNSTHVLPAKIPL 221
           EQ + G E+ C VMG+       +V +I +    F  +   E +  S N+   +PA IP+
Sbjct: 141 EQAISGCEVGCAVMGNEDDLIVGEVDQIRLSHGIFRIHQENEPEKGSENAMITVPADIPV 200

Query: 222 D 222
           +
Sbjct: 201 E 201


>gi|1814254|gb|AAB41857.1| D-Alanine:D-Alanine ligase [Streptococcus sanguinis SK1]
          Length = 197

 Score =  157 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 59/200 (29%), Positives = 101/200 (50%), Gaps = 13/200 (6%)

Query: 71  ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLI 124
            LE+L++PY    IL+S+L+MDK+ +K+V+ S G+   P + +           + +  +
Sbjct: 1   FLEVLKMPYVGCNILSSSLAMDKITTKRVLESAGIAQVPYVALVDGEDLEQKIQEIEEKL 60

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVMG 183
           + P   KP   GSS+GI   +  Q+    +L  +  +   ++L+EQ      E+  G++G
Sbjct: 61  TYPVFTKPSNMGSSVGISKSETKQNC---VLLWTWLSIRRRVLVEQGDRTAREIEVGLLG 117

Query: 184 DASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241
           +  +  T     V    FY YE KY     T  +PAKIP ++   +++ A  A +A+G  
Sbjct: 118 NVDVKSTLPGEVVKDVAFYDYEAKYIDNKITMDIPAKIPEEVVSLMRQNAEAAFRALGGL 177

Query: 242 GISRSDFLFDPLSRKVFWLE 261
           G+SR DF +     +VF  E
Sbjct: 178 GLSRCDFFY-AEDGQVFLNE 196


>gi|115372578|ref|ZP_01459885.1| D-ala D-ala ligase C-terminus family [Stigmatella aurantiaca
           DW4/3-1]
 gi|115370299|gb|EAU69227.1| D-ala D-ala ligase C-terminus family [Stigmatella aurantiaca
           DW4/3-1]
          Length = 835

 Score =  157 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 61/276 (22%), Positives = 118/276 (42%), Gaps = 23/276 (8%)

Query: 41  SVGLVLAHLKPDLAFNVLHG----NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRS 96
                L  ++PDL  N+       + GE  +V  +L+++  PYT S  L+  L++ K ++
Sbjct: 516 DFVDTLRRMQPDLVINLCESLAADSRGE-IVVPGLLDMIGQPYTGSSALSLGLALHKPKA 574

Query: 97  KQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGI---IVIKKDQSIPLD 153
           K+++ + G+      +V R        +  P ++KP    +S+G+    V++    +   
Sbjct: 575 KELLRARGISTPAFAVVKRLEDVKAVDLPYPLIVKPAHEDASMGVDFDSVVEGPAQLARA 634

Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCGVMGD---ASLDVTEIA-----VPKSDFYSYELK 205
             +  S       L+EQ++ G E+   ++G+    +L +TEI        + +  SY+ K
Sbjct: 635 AAEVLS-TFHQPALVEQFIRGREIYVPLLGNAPRRALPLTEIHFGQAFENRPNIVSYKAK 693

Query: 206 Y-----SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260
           +        +ST  +      D+   +   A  A  A+ C+   R D    P     + +
Sbjct: 694 WETESPECRDSTSAVCRLEDADLEARLVHTAMEAFSALDCQDYGRVDLRVSP-DGVPYVI 752

Query: 261 EINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +IN    + P + F + A  AG  +  L   +VE A
Sbjct: 753 DINPNCDLHPGAGFAKAALAAGIDYPALAAHLVEIA 788


>gi|310823842|ref|YP_003956200.1| d-ala d-ala ligase domain-containing protein [Stigmatella
           aurantiaca DW4/3-1]
 gi|309396914|gb|ADO74373.1| D-ala D-ala ligase domain protein [Stigmatella aurantiaca DW4/3-1]
          Length = 374

 Score =  157 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 61/276 (22%), Positives = 118/276 (42%), Gaps = 23/276 (8%)

Query: 41  SVGLVLAHLKPDLAFNVLHG----NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRS 96
                L  ++PDL  N+       + GE  +V  +L+++  PYT S  L+  L++ K ++
Sbjct: 55  DFVDTLRRMQPDLVINLCESLAADSRGE-IVVPGLLDMIGQPYTGSSALSLGLALHKPKA 113

Query: 97  KQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGI---IVIKKDQSIPLD 153
           K+++ + G+      +V R        +  P ++KP    +S+G+    V++    +   
Sbjct: 114 KELLRARGISTPAFAVVKRLEDVKAVDLPYPLIVKPAHEDASMGVDFDSVVEGPAQLARA 173

Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCGVMGD---ASLDVTEIA-----VPKSDFYSYELK 205
             +  S       L+EQ++ G E+   ++G+    +L +TEI        + +  SY+ K
Sbjct: 174 AAEVLS-TFHQPALVEQFIRGREIYVPLLGNAPRRALPLTEIHFGQAFENRPNIVSYKAK 232

Query: 206 Y-----SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260
           +        +ST  +      D+   +   A  A  A+ C+   R D    P     + +
Sbjct: 233 WETESPECRDSTSAVCRLEDADLEARLVHTAMEAFSALDCQDYGRVDLRVSP-DGVPYVI 291

Query: 261 EINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +IN    + P + F + A  AG  +  L   +VE A
Sbjct: 292 DINPNCDLHPGAGFAKAALAAGIDYPALAAHLVEIA 327


>gi|308272543|emb|CBX29147.1| hypothetical protein N47_J01280 [uncultured Desulfobacterium sp.]
          Length = 326

 Score =  156 bits (396), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 68/302 (22%), Positives = 127/302 (42%), Gaps = 30/302 (9%)

Query: 20  KACASALEDAGFKVSQIDVD---RSVGLVLAHLKPDLAFNVLHGNFGEDGLV---QAILE 73
           +A + AL   GF    +  D    +VG+ L  L P   FN++    G   L+    + L+
Sbjct: 28  EAVSKALRPLGFNPVPVKFDLNLEAVGIRLQKLNPAFVFNLVESVNGCGSLIHLAPSFLD 87

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPL 133
            L I YT S   A  L+ +K+  K  +++ G+    +  +   ++ S+  ++  Y+IK +
Sbjct: 88  YLRIAYTGSKTQAMFLTSNKLLGKDYLAANGINTSKAYCL--SSLKSKTPVNGRYIIKSV 145

Query: 134 KGGSSLGIIV-----IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM----GD 184
              +S+G+       +K    +   L +    +       E+Y+DG E    ++    G 
Sbjct: 146 WEHASIGMSQDSVVYVKSAPELIAKL-ERFRSSMIGDFFCEEYIDGREFNIALLSGPEGV 204

Query: 185 ASLDVTEI-----AVPKSDFYSYELKYSSLNSTHVLPAK------IPLDIYKEVQRLAFL 233
             L   EI        K     Y  K+ + +  ++   +         D+ + ++ ++  
Sbjct: 205 EVLPPAEILFTDYPPDKLKIVDYSAKWKTDSFEYLNTNRTFNFTSDDRDLIESLKIISRK 264

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
                G RG +R DF  D   R ++ LEIN  P ++P S F   +   G  F E++  ++
Sbjct: 265 CWDLFGLRGYARVDFRIDESGR-LWVLEINANPCISPDSGFVAASKMIGLGFPEIIKRII 323

Query: 294 ED 295
           ED
Sbjct: 324 ED 325


>gi|330874974|gb|EGH09123.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. glycinea str.
           race 4]
          Length = 154

 Score =  156 bits (395), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 46/157 (29%), Positives = 79/157 (50%), Gaps = 4/157 (2%)

Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYE 203
           +     +      +S   +  Q+L+EQ++ G E T   +    L    +  P S FY Y+
Sbjct: 1   MNSVDELIAAWKAAS--TYDSQVLVEQWIQGPEFTVASLRGQVLPPIGLGTPHS-FYDYD 57

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            KY + ++ + +P  +     +E+++LA  A  AIG  G +R+D + D    K + LE+N
Sbjct: 58  AKYLASDTQYRIPCGLGDAQEQELKQLAARACDAIGIAGWARTDVMQDAQ-GKFWLLEVN 116

Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
             PGMT  S+ P  A  AG  F++L+L ++ D+   R
Sbjct: 117 TVPGMTDHSLVPMAARAAGLDFQQLVLAILADSVQAR 153


>gi|256752676|ref|ZP_05493527.1| D-alanine--D-alanine ligase [Thermoanaerobacter ethanolicus CCSD1]
 gi|256748438|gb|EEU61491.1| D-alanine--D-alanine ligase [Thermoanaerobacter ethanolicus CCSD1]
          Length = 259

 Score =  155 bits (393), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 59/244 (24%), Positives = 109/244 (44%), Gaps = 22/244 (9%)

Query: 70  AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV-NRFTMDSQHLISPPY 128
           A LE+  IPY  SG+    ++ DK   K +V+S G+P    ++  N   + S   +  P 
Sbjct: 14  AFLEVFNIPYVGSGLDV--VATDKRMRKDIVASHGLPTPKYVIAENPQEIPSVDHLKFPL 71

Query: 129 VIKPLKGGSSLGI---IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG-- 183
            +KP+ G  S GI    +I     +P  ++   +   G   LIE++++G E+T G++G  
Sbjct: 72  FVKPISGRGSAGIDEENIIYDKDKLP-QVVSKITEKIGQAALIEEFIEGKEVTVGIIGYK 130

Query: 184 -DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
               L + E+        +YE K    N     P ++P ++ ++++  A   ++ +  + 
Sbjct: 131 HPQVLPLLEVGYNNVKTNTYEHKM-FDNEIIKCPIEVPKEVEEKIKETALNIYKVLNAKD 189

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSI----------FPEMAAYAGYSFRELLLWM 292
            +R D +        ++LE+N   G+T  S              MA  AG +  E +  +
Sbjct: 190 FARIDMILSK-DNVPYFLELNTFAGLTMSSSKGEKHVHHGYMGYMAKAAGLTRGEFIGKI 248

Query: 293 VEDA 296
           +E A
Sbjct: 249 IESA 252


>gi|182413979|ref|YP_001819045.1| D-alanine--D-alanine ligase domain-containing protein [Opitutus
           terrae PB90-1]
 gi|177841193|gb|ACB75445.1| D-alanine--D-alanine ligase domain protein [Opitutus terrae PB90-1]
          Length = 339

 Score =  155 bits (393), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 53/299 (17%), Positives = 118/299 (39%), Gaps = 25/299 (8%)

Query: 17  SSGKACASALEDAGF---KVSQIDVDRSVGLVLAHLKPDLAFNV---LHGNFGEDGLVQA 70
            +     +AL + G+    ++  D    +   +   +PD+ FN+      N   D  + +
Sbjct: 33  KTEAGVLAALNELGYPNEHLAIFDDLEPLRQKVQAFQPDVVFNLADQFRNNRAFDQHIVS 92

Query: 71  ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR-FTMDSQHLISPPYV 129
            L + +IP+T  G     L   K  SK+++S   +      ++ R         +  P +
Sbjct: 93  FLAMSDIPFTGCGSTGLTLCKHKGVSKKILSYHRIHTPAFAIIPRGRRAVRPKRLKFPIL 152

Query: 130 IKPLKGGSSLGI---IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD-- 184
           +KPLK  +S GI     ++ D+     +         +  + E+Y++G EL   ++G+  
Sbjct: 153 VKPLKEEASYGIAQASFVETDEQFRERVEFVHQ-KFNNDAIAEEYIEGRELYVSLLGNHR 211

Query: 185 ------ASLDVTEIAVPKSDFYSYELKYS-----SLNSTHVLPAKIPLDIYKEVQRLAFL 233
                   L   E+   +    +Y+ K+           +     +   + ++++     
Sbjct: 212 LQVFPIRELVFREVPPDEPKIATYKAKWDEAYRARWGLENRFVEDLEPALVRKIEATCRR 271

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
            ++ +   G +R D   +    +++++E N  P + P   F   A  AG S+ +L+  +
Sbjct: 272 IYRLLTIDGYARLDLRLNAR-NELWFIEANANPILAPDEDFALSAGKAGLSYPQLIDRI 329


>gi|21321301|dbj|BAB97388.1| D-alanine-D-alanine ligase [Pectobacterium chrysanthemi]
          Length = 368

 Score =  155 bits (393), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 73/286 (25%), Positives = 132/286 (46%), Gaps = 15/286 (5%)

Query: 21  ACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYT 80
           +  SA  D G    +I+      L       +  F   HG +GEDG +Q  L+ ++ PY 
Sbjct: 62  SIESAFIDLGLNYKKIE-STDNNLQYEINNHNFVFIYAHGEYGEDGRLQGFLDYIDKPYP 120

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-----DSQHLISPPYVIKPLKG 135
            SG+LASA+  DK++ K +++   V       +N              +  P + K   G
Sbjct: 121 GSGVLASAVCCDKLKFKYLMTGSSVNTPNFYELNIHDSYSDVHKKALCLQYPIMAKERCG 180

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG---VMGDASLDVTEI 192
           GSSLGI  I  D+ +     ++   N  ++  +E+++ G  ++ G   ++    +  T  
Sbjct: 181 GSSLGITYISNDEDLHTWYEKNK--NEINKYFLEKFISGRIISVGFVQMIEGVLILPTLE 238

Query: 193 AVPKSDFYSYELK--YSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGCRGISRSDFL 249
            V  S++Y  ELK  +S  +  ++L +    + I ++++  A  A +   C+G+ R   L
Sbjct: 239 TVTNSNYYDAELKIGHSHHDVKYILNSFSSKEYIDRKIKETAIKAFEHAACQGVGRV-DL 297

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
               +  +F LEIN  PG++  S F +M    G+S+ EL++  +  
Sbjct: 298 IIDDNDDIFILEINTIPGISKNSNFTKMFTSLGFSYNELVIAFIRT 343


>gi|758375|gb|AAA87682.1| putative D-alanine:D-alanine ligase [Lactobacillus plantarum]
          Length = 201

 Score =  154 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 59/204 (28%), Positives = 105/204 (51%), Gaps = 15/204 (7%)

Query: 71  ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLI 124
           + +LL+ PY  SG+LASA S DK  +KQ+++   +     ++V     D       Q  +
Sbjct: 1   LFKLLKKPYVGSGVLASAASFDKDITKQILTHHHIQNTKYVVVTPENRDQMTYAYLQAHV 60

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMG 183
                IKP   GSS+GI   + +Q     L  +  +++  ++L+E+ +D   E+ C ++G
Sbjct: 61  GDHLSIKPANQGSSIGIHKAENEQEYLDGLADAFKYDY--KILVEESIDNPREVECSILG 118

Query: 184 DASLDVT---EIAVPKSD-FYSYELKYSSLNS-THVLPAKIPLDIYKEVQRLAFLAHQAI 238
           + +   +    I VPK+D FY Y   +   +  T  LP ++P D+ K +Q++   A +A+
Sbjct: 119 NENPKASKLGAIDVPKTDTFYDYNNMFVDASGVTFELPVELPADLTKRIQQMCVDAFRAL 178

Query: 239 GCRGISRSDFLFDPLSRKVFWLEI 262
           G +G++R DFL      + +  EI
Sbjct: 179 GLKGMARVDFLVSE-DGEPYLGEI 201


>gi|255029325|ref|ZP_05301276.1| D-alanyl-alanine synthetase A [Listeria monocytogenes LO28]
          Length = 170

 Score =  153 bits (387), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 37/151 (24%), Positives = 75/151 (49%), Gaps = 6/151 (3%)

Query: 151 PLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--DVTEIAVPKS---DFYSYELK 205
            L    + ++ +  ++++EQ V   E+  GV+G+ +    V    +P+     FY Y+ K
Sbjct: 5   ELVDAMTEAFLYDRRVVVEQGVVAREIEMGVLGNDTPVCSVPGEILPEGAVATFYDYKAK 64

Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           Y   N+  ++P ++  +I ++++  A  A   +   G+ R+DF       ++F  E+N  
Sbjct: 65  YQDNNTALIIPTEVDPEILEQMKEYAIQAFLGLDASGLVRADFFLTE-DNQLFLNEVNTM 123

Query: 266 PGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           PG TP S++P +    G  +  L+  +V+ A
Sbjct: 124 PGFTPYSMYPLLWQETGLPYGALIERLVDLA 154


>gi|186474632|ref|YP_001863603.1| D-alanine--D-alanine ligase [Burkholderia phymatum STM815]
 gi|184198591|gb|ACC76553.1| D-alanine--D-alanine ligase [Burkholderia phymatum STM815]
          Length = 357

 Score =  152 bits (385), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 72/334 (21%), Positives = 134/334 (40%), Gaps = 46/334 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGF----KVSQIDVDRSVGLVL--AHLKPD-- 52
           +++  GG S+E   SL S +     + +        +  +DV+  V +    A L  D  
Sbjct: 7   ISIAFGGKSTEHRASLESFRHVIGEIHNDDSVEIEDIYYVDVEGRVAVTPFQAGLPVDSY 66

Query: 53  ---------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSM 91
                                   N+L+GNFGEDG +Q    +  +P +   +LA++L+M
Sbjct: 67  VRDREYMPYWAALGRMVNAGTFVLNLLYGNFGEDGKIQGAAAIASVPGSFGPVLAASLAM 126

Query: 92  DKMRSKQVVSSCG--VPVCPSILVNRFTMDSQ------HLISPPYVIKPLKGGSSLGIIV 143
            K    Q ++S    V +  ++L+    +                V+KP   G+SL    
Sbjct: 127 SKYHMNQYIASAHPVVQIPDTLLLRECDLPEASTRIFDRFHGMEIVVKPNSLGASLFTNR 186

Query: 144 IKKDQSIPLDLL--QSSSWNHGDQLLIEQYVDGIELTCGVMGDAS----LDVTEIAVPKS 197
              D      +    +  + +    L+++YV G E + G +        L    I   + 
Sbjct: 187 YLVDPECIESIKTNLAEIFEYDANALVQRYVSGTEYSIGCLQKNETVMVLPAVRIET-EG 245

Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
            F+ +E K+ S  +  ++  +    + K +  L+    +++  R + R DF+  P    +
Sbjct: 246 AFFGHEEKHRSGKANEIIIMEESP-VVKSLGDLSIEIFKSVDFRNMCRFDFIVSPEE-AI 303

Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           F+LE N  PG+   SIFP+M A +  +  E +  
Sbjct: 304 FFLEANTIPGLMRNSIFPKMLAASDITLGEAISQ 337


>gi|758377|gb|AAA87683.1| putative D-alanine:D-alanine ligase [Lactobacillus salivarius]
          Length = 201

 Score =  152 bits (385), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 49/204 (24%), Positives = 99/204 (48%), Gaps = 15/204 (7%)

Query: 71  ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLI 124
           +  LL  P+  SG+ +S +S DK  + ++++  G+     +LV                +
Sbjct: 1   LFRLLNKPWIGSGVTSSGVSFDKDLTNKLLTLNGIRNTKYVLVTPENKADYPYAKVAEEL 60

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMG 183
                +KP + GSS+GI  ++ ++     L     +++  ++L+E+ +    E+ C V+G
Sbjct: 61  GETLFVKPARQGSSVGIHKVRNEEEYNAALEDGFKYDY--KILVEEAIKNPREVECSVLG 118

Query: 184 DASLDVT---EIAVPK-SDFYSYELKYSSLNST-HVLPAKIPLDIYKEVQRLAFLAHQAI 238
           +  +  +    I +P+  DFY Y  K+   +     +P K+P  + KE Q+++  A +A+
Sbjct: 119 NRDIKASKLGAIRIPESDDFYDYNNKFVDASGVVFEMPIKLPEKLTKENQQMSLDAFRAL 178

Query: 239 GCRGISRSDFLFDPLSRKVFWLEI 262
             RG++R DFL D      ++ E+
Sbjct: 179 DNRGLARMDFLVDEND-VPYFGEV 201


>gi|307266588|ref|ZP_07548119.1| D-alanine--D-alanine ligase [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306918385|gb|EFN48628.1| D-alanine--D-alanine ligase [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 250

 Score =  152 bits (385), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 58/244 (23%), Positives = 107/244 (43%), Gaps = 22/244 (9%)

Query: 70  AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV-NRFTMDSQHLISPPY 128
           A LE+  IPY  SG+    ++ DK   K +V+S G+P    ++  N   + S   +  P 
Sbjct: 5   AFLEVFNIPYVGSGLDV--VATDKRMRKDIVASHGLPTPKYVIAQNPQEIPSVDHLKFPL 62

Query: 129 VIKPLKGGSSLGI---IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG-- 183
             KP+ G  S GI    +I     +P  ++   +   G   LIE++++G E+T G++G  
Sbjct: 63  FAKPISGRGSAGIDEENIIYDKDKLP-QVVSKITDKIGQAALIEEFIEGKEVTVGIIGYK 121

Query: 184 -DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
               L + E+        +YE K    N     P ++  ++ ++++  A   ++ +  + 
Sbjct: 122 HPQVLPLLEVGYNNVKTNTYEHKM-FDNEIIKCPMEVSKEVEEKIKETALNIYKVLNAKD 180

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSI----------FPEMAAYAGYSFRELLLWM 292
            +R D +        ++LE+N   G+T  S              MA  AG +  E +  +
Sbjct: 181 FARIDMILSK-DNVPYFLELNTFAGLTMSSSKGEKHVHHGYMGYMAKAAGLTRGEFIRKI 239

Query: 293 VEDA 296
           +E A
Sbjct: 240 IESA 243


>gi|51945071|gb|AAU14218.1| VanB [Enterococcus faecium]
          Length = 223

 Score =  152 bits (385), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 44/160 (27%), Positives = 79/160 (49%), Gaps = 6/160 (3%)

Query: 49  LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
            + D+AF VLHG  GEDG +Q +  L  IPY    I +SA  MDK  +  +  + G+ V 
Sbjct: 54  RRIDVAFPVLHGKCGEDGAIQGLFVLSGIPYVGCDIQSSAACMDKSLAYILTKNAGIAVP 113

Query: 109 PSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168
              ++++        ++ P  +KP + GSS G+  +   + +   +   ++  +  ++LI
Sbjct: 114 EFQMIDKGDKPEAGALTYPVFVKPARSGSSFGLTKVNGTEELNAAI--EAAGQYDGKILI 171

Query: 169 EQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSYEL 204
           EQ + G E+ C VMG+       +V +I +    F  ++ 
Sbjct: 172 EQAISGCEVGCAVMGNEDDLIVGEVDQIRLSHGIFRIHQE 211


>gi|325111080|ref|YP_004272148.1| D-alanine--D-alanine ligase domain protein [Planctomyces
           brasiliensis DSM 5305]
 gi|324971348|gb|ADY62126.1| D-alanine--D-alanine ligase domain protein [Planctomyces
           brasiliensis DSM 5305]
          Length = 349

 Score =  152 bits (384), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 68/288 (23%), Positives = 116/288 (40%), Gaps = 34/288 (11%)

Query: 10  SEREVSLSSGKACASALEDAGFK----VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGED 65
           SER+V L   +A ++A+   G +       +D+ R +   L   +PD  FN++    G D
Sbjct: 23  SERDV-LVQAEAVSAAVSRMGHRPRSLACTLDLQR-LQRKLIERRPDCVFNLVESLDGSD 80

Query: 66  GL---VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
            L   V  +LE L+IPYT S  ++   S DK+ +K ++ +  +P       +        
Sbjct: 81  RLMPLVPLLLEQLQIPYTGSSAVSIVQSSDKLSAKHLLRTASLPTPGW---SDGEDVPDS 137

Query: 123 LISPPYVIKPLKGGSSLGI-----IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
           L+  P ++K +   +S G+             +   L    +   G     E+++DG E 
Sbjct: 138 LLHRPVIVKAIHEHASFGLDDSSIQTFHSASQLREVLDDRLA-ATGQPHFAEEFIDGREF 196

Query: 178 TCGVM----GDASLDVTEIAVP-----KSDFYSYELKYSSLNSTHVLPA---KIPL---D 222
              ++    G   L   EI              Y  K+   ++ +V       +P    D
Sbjct: 197 NVSLLAGSRGPVVLPPAEIDFSFLPSESLRIVGYAAKWEEDSAEYVGTPRRFDLPEQDRD 256

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270
           +  E+Q L        G +G +R DF  D   R+ + LEIN  P + P
Sbjct: 257 LVGEIQELCRRCWNVFGLKGYARVDFRVDTQ-RRPWILEINGNPCLAP 303


>gi|325972390|ref|YP_004248581.1| D-alanine--D-alanine ligase domain protein [Spirochaeta sp. Buddy]
 gi|324027628|gb|ADY14387.1| D-alanine--D-alanine ligase domain protein [Spirochaeta sp. Buddy]
          Length = 314

 Score =  152 bits (384), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 70/302 (23%), Positives = 118/302 (39%), Gaps = 36/302 (11%)

Query: 16  LSSGKACASALEDAGFKVSQIDVDRSVGLV---LAHLKPDLAFNV---------LHGNFG 63
           L   KA   AL   G  V       ++ L    +     DL FN+         LH    
Sbjct: 22  LLQVKAVKKALLRLGHSVEVAAFSLNLILTARRIEKSGCDLVFNLVENLSSSRLLH---- 77

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
              LV  + + L +PY+       +++ DK+ +K+ +   G+P  P         +    
Sbjct: 78  ---LVPLVCQTLSVPYSGGSAYTLSVTGDKLVAKRQLGLAGLPTPPWF---EDVAECSDF 131

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM- 182
           +  P ++KP+   +S+GI               S + +    L  E+Y+DG E    ++ 
Sbjct: 132 LQVPLMLKPVAQEASVGITDASVRTFSDKA-QLSLALSEHPDLFAERYIDGREFNLSILP 190

Query: 183 GDASLDVTEIAV-----PKSDFYSYELKYSSLNSTHVLP------AKIPLDIYKEVQRLA 231
               L V E+        K     YE K+   +  +         A     + +E++RLA
Sbjct: 191 SGRVLPVCEMRFVDYPKDKVKIVGYEAKWQQESFAYQHTQRSYVFAPEQRVLVEELKRLA 250

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
              +   G  G +R DF  D  +R  F LE+N  P +T  S F   A+ AG S+ E++  
Sbjct: 251 KEVYTLFGSSGYARVDFRVDEQNR-PFILEMNSNPCITADSGFIAAASEAGMSYTEVIEQ 309

Query: 292 MV 293
           ++
Sbjct: 310 LL 311


>gi|224368435|ref|YP_002602598.1| DdlB1 [Desulfobacterium autotrophicum HRM2]
 gi|223691151|gb|ACN14434.1| DdlB1 [Desulfobacterium autotrophicum HRM2]
          Length = 339

 Score =  151 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 73/315 (23%), Positives = 126/315 (40%), Gaps = 30/315 (9%)

Query: 11  EREVSLSSGKACASALEDAGFK--VSQIDVD-RSVGLVLAHLKPDLAFNVLHGNFGEDGL 67
           E +V L    A + AL   G++      D+D  ++   L  +KP + FN++    G   L
Sbjct: 20  EIDV-LVQVDAVSQALSGLGYEPIAVPCDLDLNALKQTLTAMKPAVVFNLVESLDGHGRL 78

Query: 68  VQ---AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI----LVNRFTMDS 120
           +Q   A++E L    T     A  L+  K+ +K+ + S G+P    I    L   +   +
Sbjct: 79  IQVVPALVEALGYACTGCPAEAIYLTSHKVMAKERMRSLGLPTADWINPVPLDIPWQGAA 138

Query: 121 QHLISPPYVIKPLKGGSSLGI---IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
               +  ++IK L   +SLG+    ++K +      LL   +   G     EQ++ G E 
Sbjct: 139 DLGPTGTWIIKSLWEHASLGLELENLVKGNSREIAALLPDRASALGGACFAEQFIQGREF 198

Query: 178 TCGVM----GDASLDVTEIAVPKSDFY-----SYELKYSSLNSTHVLPAKI------PLD 222
              +M    G   L   EI     D        Y  K+    + +    +          
Sbjct: 199 NLSLMDTDKGVRVLPPAEIIFKGFDHDQPKIVGYRAKWVQDAAEYHNTPRSFDFSPKDAP 258

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAG 282
           +   ++RL+       G RG +R DF  D L    F LE+N  P ++P + F      AG
Sbjct: 259 LIANLERLSLGCWHGFGLRGYARVDFRVDDLGN-PFILEVNTNPCISPDAGFCAALEQAG 317

Query: 283 YSFRELLLWMVEDAS 297
            S  + +  +++ +S
Sbjct: 318 ISHGQGIHMILKQSS 332


>gi|167522361|ref|XP_001745518.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163775867|gb|EDQ89489.1| predicted protein [Monosiga brevicollis MX1]
          Length = 806

 Score =  150 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 58/316 (18%), Positives = 122/316 (38%), Gaps = 48/316 (15%)

Query: 32  KVSQIDVDRSVGLVLAHLK----PDLAFNVLHGNFGEDGL----VQAILELLEIPYTHSG 83
           +V  ++   S+   L  L     P + FN+    F         V A++++L + Y+ + 
Sbjct: 480 EVVFLNHHDSMFEALTALAREHIPPVIFNLCDEGFNNHARLELHVPAMMDILGLHYSGAA 539

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM------------DSQHLISPPYVIK 131
               A+  DK     +    GVPV   + ++  T             +    +  P  +K
Sbjct: 540 PACLAICYDKGLVNALARRLGVPVPAEVFISHETDLRQLLIDEAAATEFLQDLDFPVFVK 599

Query: 132 PLKGGSSLGI---IVIKKDQSIPL--DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186
           P++G  S+GI    +    + +    + ++++       +++++Y+ G E++ GV+G+  
Sbjct: 600 PVRGDGSVGITADSICNNVEELISYVEAVRANPTVLSKDVVVQEYLQGEEVSVGVIGNPE 659

Query: 187 LDVTEIAVPKSDFY-------------------SYELKYSSLN----STHVLPAKIPLDI 223
           +D     +P S  +                   SYE K+   +         PA++  + 
Sbjct: 660 MDAVGDVIPDSALFLPILKADFSQLPADLPPILSYESKWDPESPYWTDVQYKPAEVSAEH 719

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283
            +++ +   L       R   R DF F   ++    LE+N  PG         MA  AG 
Sbjct: 720 RRQLHQQCALLFNRFELRDFGRFDFRFSKRTQTFKLLEVNPNPGWCHDGKAALMAQMAGL 779

Query: 284 SFRELLLWMVEDASCL 299
           ++ +++  ++  A   
Sbjct: 780 NYADMIQRIILAAEAR 795


>gi|186685649|ref|YP_001868845.1| D-alanine--D-alanine ligase domain-containing protein [Nostoc
           punctiforme PCC 73102]
 gi|186468101|gb|ACC83902.1| D-alanine--D-alanine ligase domain protein [Nostoc punctiforme PCC
           73102]
          Length = 348

 Score =  150 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 61/244 (25%), Positives = 115/244 (47%), Gaps = 23/244 (9%)

Query: 69  QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPY 128
           +A+ +LL+IPY  +     A++  K R+K +V + GV V    L+ +  +     I+PP 
Sbjct: 100 RALFDLLKIPYIGNTPDIMAIAAHKARAKAIVEAAGVKVPRGELLRQGDI---PTITPPA 156

Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGV------ 181
           V+KP+   +SLG++++K        L +  ++ +  ++++E +++ G E+ CG+      
Sbjct: 157 VVKPVSSDNSLGVVLVKDVTEYDAALKK--AFEYASEVIVEAFIELGREVRCGIIVKDGE 214

Query: 182 MGDASLDVTEIAVPKSDFYSYELK-YSSLNSTHVLPA---------KIPLDIYKEVQRLA 231
           +    L+   +        +Y  K   + +    L A              I ++VQ++A
Sbjct: 215 LIGLPLEEYLVDPHDKPIRNYADKLQQTDDGDLHLTAKDNIKAWILDPNDPITQKVQQVA 274

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
              HQA+GCR  S  DF  DP   + ++LE  +     P S+   MA  AG    +LL+ 
Sbjct: 275 KRCHQALGCRHYSLFDFRIDPK-GQPWFLEAGLYCSFAPKSVISSMAKAAGIPLNDLLIT 333

Query: 292 MVED 295
            + +
Sbjct: 334 AINE 337


>gi|88812924|ref|ZP_01128168.1| hypothetical protein NB231_00250 [Nitrococcus mobilis Nb-231]
 gi|88789846|gb|EAR20969.1| hypothetical protein NB231_00250 [Nitrococcus mobilis Nb-231]
          Length = 348

 Score =  150 bits (379), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 82/333 (24%), Positives = 131/333 (39%), Gaps = 38/333 (11%)

Query: 1   MAVLMGG------------ISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH 48
           +AVL+G               +E + ++   K   +ALE  GF  + +D   ++   L  
Sbjct: 12  VAVLLGDPRLPYAYAIGACFGAEEQNAVEQLKTALAALE--GFTFTYLDDHTTLLDDLRQ 69

Query: 49  LKPDLAFNVLHGNFGEDGL----VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCG 104
             P LAFN+    F  D      + A+LE+L I Y+ +  +  +L+ DK   + V  S G
Sbjct: 70  RPPSLAFNLCDVGFRNDTARELNIPALLEILNISYSGADPVGMSLATDKSIVRVVARSLG 129

Query: 105 VPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGII---VIKKDQSIPLDLLQSSSWN 161
           +PV   + V+            P +IKP     S GI    V          L   +   
Sbjct: 130 IPVPNEMFVDLGADPLVLPALYPALIKPNFSDGSFGITADCVAHDAAEAERYLHWLAGEL 189

Query: 162 HGDQLLIEQYVDGIELTCGVMGDAS-----LDVTEIAVPKSD-----FYSYELKYSSLN- 210
              + LI+ ++ G E T G++G+AS     L   E+   + D       SY  K    + 
Sbjct: 190 ERPEALIQDFLTGTEYTVGLIGNASQGFTYLPPLEVDYSRLDPELPPILSYASKADPDSP 249

Query: 211 ---STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPG 267
                    A+I       +     L  + +G R   R DF       +   LE+N  P 
Sbjct: 250 YWQKLRFRRARIDEVTRGRLYEYCTLLFKRLGLRDYGRFDFR-AGADGEPRLLEVNHNPA 308

Query: 268 MTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
                    MA+YAGYS+ +LL  ++  A+ +R
Sbjct: 309 WAWDGKLSLMASYAGYSYSDLLRLIL--AAAMR 339


>gi|58201631|gb|AAW66892.1| vancomycin resistance protein B [Enterococcus faecium]
          Length = 166

 Score =  150 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 44/160 (27%), Positives = 79/160 (49%), Gaps = 6/160 (3%)

Query: 49  LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
            + D+AF VLHG  GEDG +Q +  L  IPY    I +SA  MDK  +  +  + G+ V 
Sbjct: 8   RRIDVAFPVLHGKCGEDGAIQGLFVLSGIPYVGCDIQSSAACMDKSLAYILTKNAGIAVP 67

Query: 109 PSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168
              ++++        ++ P  +KP + GSS G+  +   + +   +   ++  +  ++LI
Sbjct: 68  EFQMIDKGDKPEAGALTYPVFVKPARSGSSFGVTKVNGTEELNAAI--EAAGQYDGKILI 125

Query: 169 EQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSYEL 204
           EQ + G E+ C VMG+       +V +I +    F  ++ 
Sbjct: 126 EQAISGCEVGCAVMGNEDDLIVGEVDQIRLSHGIFRIHQE 165


>gi|294101200|ref|YP_003553058.1| D-alanine--D-alanine ligase [Aminobacterium colombiense DSM 12261]
 gi|293616180|gb|ADE56334.1| D-alanine--D-alanine ligase [Aminobacterium colombiense DSM 12261]
          Length = 350

 Score =  149 bits (377), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 60/295 (20%), Positives = 123/295 (41%), Gaps = 27/295 (9%)

Query: 26  LEDAGFKVSQIDV-------DRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELL--- 75
           L   G+ +  +D+        + +   +   +P   FN+  G   E  L  +  E+L   
Sbjct: 46  LSSQGYSIYNLDIFPADLADPKHLVQRINEYQPLCVFNLFEGFGSEPWLEASFCEILEKN 105

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN-RFTMDSQHLISPPYVIKPLK 134
            + +T +   A  L +DK    Q + + G+PV  S  +  + T+ +   IS P  IKP +
Sbjct: 106 NLTFTGNPSGALRLCIDKHTLHQQLKTAGIPVPLSYFLKGKETLGTLENISFPLFIKPCR 165

Query: 135 GGSSLGI---IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
              S+GI    ++  ++ +   + +  +    D +LI++++ G E     + +       
Sbjct: 166 EDGSVGIDKKSLVFNEEELQESVTEKLA-KFPDGILIQEFLSGPEYCVSFVDNGPFSPVG 224

Query: 192 IAVPKSDFY-------SYELKYSSLNSTH-VLPAKIPLD--IYKEVQRLAFLAHQAIGCR 241
           +       Y       SY+ K++  +    + P +I LD  + + +  +A  A    GC+
Sbjct: 225 LWTLDYSRYPECPAYLSYDAKWNENSPEWNLWPEEIDLDYSLKETILHMASRAALVAGCK 284

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           G  R D         +F ++IN  P +T  S         G ++ +L++ +++ A
Sbjct: 285 GYFRVD--LRENQGHLFVMDINPNPALTRDSGMARQYMQKGKTYEQLVMKILQLA 337


>gi|113476541|ref|YP_722602.1| D-alanine--D-alanine ligase [Trichodesmium erythraeum IMS101]
 gi|110167589|gb|ABG52129.1| D-alanine--D-alanine ligase [Trichodesmium erythraeum IMS101]
          Length = 361

 Score =  149 bits (377), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 57/242 (23%), Positives = 109/242 (45%), Gaps = 22/242 (9%)

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKP 132
           ++L +P   S    +AL+ +K +++ VV + GV V  +  + R        + PP+V+KP
Sbjct: 111 DMLNLPLVGSPSYCTALATNKAQTRNVVLASGVQVAKAQQLGRGET---LTMKPPFVVKP 167

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS----LD 188
               +SLG+ ++  +  I   L +   +   ++LL+E Y+ G EL   V+   S    L 
Sbjct: 168 TSEDNSLGLTLVWDESQIEAALDK--GFELDNKLLVEDYIPGRELRVAVVERESKLSVLP 225

Query: 189 VTEIAVPKSD-FYSYELKYSSLN------------STHVLPAKIPLDIYKEVQRLAFLAH 235
           + E  V +     +   KY   +            +  + PA +  ++++++   A  AH
Sbjct: 226 MIEYLVTEEHPIRTVHDKYVLQSDGTPGKQPEKPIAQPICPANVTPELFEKLVNAAKNAH 285

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
            A+GCR  S  DF     + + ++LE  +  G   +S+   M    G S  ++ L +   
Sbjct: 286 IALGCRDYSLYDFRVHAETNEPYFLEAGLFWGFGKISMISRMLQADGQSLEDVSLELWSA 345

Query: 296 AS 297
           A+
Sbjct: 346 AA 347


>gi|119512131|ref|ZP_01631223.1| D-alanine--D-alanine ligase [Nodularia spumigena CCY9414]
 gi|119463221|gb|EAW44166.1| D-alanine--D-alanine ligase [Nodularia spumigena CCY9414]
          Length = 350

 Score =  148 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 63/244 (25%), Positives = 117/244 (47%), Gaps = 23/244 (9%)

Query: 69  QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPY 128
           +A+ +LL+IP   +     A++  K R+K +V++ GV V    L+    +     I+PP 
Sbjct: 100 RALFDLLKIPCVGNSADIMAIASHKARTKAIVAAAGVKVPRGELLRPGDV---PTITPPV 156

Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGV------ 181
           VIKP+   +SLG+ ++K+       L   +++ + D++++E +++ G E+ CG+      
Sbjct: 157 VIKPVSSDNSLGVALVKEASDYEAAL--QTAFEYADEVIVETFIELGREVRCGIIVKDGD 214

Query: 182 MGDASLDVTEIAVPKSDFYSYELK----------YSSLNSTHVLPAKIPLDIYKEVQRLA 231
           +    L+  ++   +    SY  K          +S+ ++           I K VQ +A
Sbjct: 215 LVGLPLEEYKLDPDEKPIRSYADKLQKTDDGNLSFSAKDNMKSWIVDPSDPITKRVQEVA 274

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
            + HQA+GCR  S  DF  DP   + ++LE  +     P S+   MA  AG    EL + 
Sbjct: 275 KMCHQALGCRHYSLFDFRIDPQ-GQPWFLEAGLYCSFAPKSVISCMAIAAGIPLNELFMT 333

Query: 292 MVED 295
           ++ +
Sbjct: 334 VIHE 337


>gi|167947938|ref|ZP_02535012.1| D-alanine--D-alanine ligase [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 128

 Score =  147 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 52/107 (48%), Positives = 64/107 (59%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG S+EREVSL SG A   AL         +D   ++   L+    D AF VLHG
Sbjct: 12  VAVLMGGCSAEREVSLRSGDAVFQALLRQAIDAHAVDSAENLLEQLSEGGFDRAFIVLHG 71

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV 107
             GEDG VQ  LE + +PYT SG+L SAL MDK R+K + S  G+P 
Sbjct: 72  RGGEDGTVQGALESIGLPYTGSGVLGSALGMDKYRTKALWSGLGLPT 118


>gi|291447622|ref|ZP_06587012.1| D-alanine-D-alanine ligase [Streptomyces roseosporus NRRL 15998]
 gi|291350569|gb|EFE77473.1| D-alanine-D-alanine ligase [Streptomyces roseosporus NRRL 15998]
          Length = 332

 Score =  147 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 67/316 (21%), Positives = 131/316 (41%), Gaps = 26/316 (8%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI------DVDRSVGLVLAHLKPDLA 54
           +AV+ GG ++E E +L S +  A A  + G   S +           +  +L   + D+A
Sbjct: 17  IAVIAGGRTAEAEGTLGSAEQLARAAAELGHHTSLVSVEAAGHPQDRMSALLKAAEHDVA 76

Query: 55  FNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
             ++ G       ++  LE L++PY  S  +A+ ++  K     ++ + G+     +  +
Sbjct: 77  IPLIPG-------LEGTLEFLDVPYVGSSPVAAGIAAHKGLFNDLLVAAGLGKVRYVYGS 129

Query: 115 RFT---MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 M  +  +S P  +KP + G+S GI  +     +   +  +++  H   +LIE+ 
Sbjct: 130 GPEVLSMWQKADMSLPVFVKPARLGASYGISRVTTAHELSDAI--NAAAEHDPVVLIEES 187

Query: 172 VDG--IELTCGVMGDASL---DVTEIAVPK-SDFYSYELKYSSLNSTHVLPAKI-PLDIY 224
           V     E    ++    +      ++ +P+ ++++    KYS    T    ++    ++ 
Sbjct: 188 VPTPFTEYEVPIIAGREIVSAPPGQVCLPQAAEWHDTLSKYSLDAETSRTISRTGDAELD 247

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
             +   A  A    G    +R D   D    +V+  EIN  PG    S FP +   AG+S
Sbjct: 248 SRLMEAALAAASLAGVACAARVDLFVDAH-GQVYVGEINALPGQGFNSNFPRIFELAGFS 306

Query: 285 FRELLLWMVEDASCLR 300
               L  M++ A   R
Sbjct: 307 RPRQLELMIDSALFHR 322


>gi|301513415|ref|ZP_07238652.1| D-alanine--D-alanine ligase [Acinetobacter baumannii AB058]
 gi|301596388|ref|ZP_07241396.1| D-alanine--D-alanine ligase [Acinetobacter baumannii AB059]
          Length = 137

 Score =  146 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 50/130 (38%), Positives = 71/130 (54%), Gaps = 4/130 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+ER VSL SG+A   AL  +G +    D        L  +  D AF VLHG
Sbjct: 10  VAVLLGGKSAERAVSLDSGQAVLDALLRSGVQAEAFDPQNRSVTEL--VNYDRAFIVLHG 67

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LE L IPYT +G+  SA+ MDK+++KQ+     +P  P  ++ + T   
Sbjct: 68  RGGEDGQIQGVLEWLNIPYTGTGVQGSAIGMDKVKTKQIWQGSDLPTAPYRIITKETDLD 127

Query: 121 Q--HLISPPY 128
                +  P 
Sbjct: 128 SVIAELGLPV 137


>gi|121998283|ref|YP_001003070.1| hypothetical protein Hhal_1501 [Halorhodospira halophila SL1]
 gi|121589688|gb|ABM62268.1| conserved hypothetical protein [Halorhodospira halophila SL1]
          Length = 348

 Score =  146 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 74/298 (24%), Positives = 121/298 (40%), Gaps = 23/298 (7%)

Query: 19  GKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGE----DGLVQAILEL 74
            +   +AL   G  +   D    +   L    P+LA N+    +      +  + A+LEL
Sbjct: 39  ARRVLAALP--GVTLRVFDDHERLIDDLRADPPELAVNLCDNGYCNRLELEANIPALLEL 96

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLK 134
            EIPYT +G  A  LS DK   + + +S GV V     ++            P VIKP  
Sbjct: 97  FEIPYTGTGGAAMGLSRDKAAVRALAASLGVAVPEERTIDLSDPTPALPERYPAVIKPND 156

Query: 135 GGSSLGI--IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS------ 186
           G  S+G+    + +D       L+  + +    +L ++Y+ G E T G++G+ +      
Sbjct: 157 GCGSIGMEPDCVVEDAHQAQAYLRRLAGSGAAWVLAQEYLPGAEYTVGLVGNPATGLLVL 216

Query: 187 ----LDVTEIAVPKSDFYSYELKYSSLNSTH----VLPAKIPLDIYKEVQRLAFLAHQAI 238
               +D T +        SY  K    +  +      PA++  +    ++  A      +
Sbjct: 217 PALVVDYTALPPELPPILSYGSKVDPASPYYQALRFAPAQLSEEKRSAMEVAARRLFARV 276

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           G R  +R DF  + L      L+ N  P   P      MA YAGYS+ +LL  +V  A
Sbjct: 277 GARDYARVDFR-EDLRGVPRLLDFNNHPSWGPDGKLAMMAGYAGYSYADLLERIVRAA 333


>gi|297170877|gb|ADI21895.1| D-alanine-D-alanine ligase and related ATP-grasp enzymes
           [uncultured gamma proteobacterium HF0130_26L16]
          Length = 211

 Score =  146 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 48/203 (23%), Positives = 85/203 (41%), Gaps = 47/203 (23%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK------------ 50
           +L GG S+E EVS+ S ++   A++   ++V    + R+    L   +            
Sbjct: 8   LLFGGQSAEHEVSVVSARSVYQAIDSDRYEVILAGISRTGQWFLEDGEASLLEHSEVSNG 67

Query: 51  --------------------------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84
                                      D+ F +LHG  GEDG VQ +LEL +  Y  +G+
Sbjct: 68  SGSPVQLGAGQRELVALDGNPVGSTAFDVVFPLLHGPRGEDGSVQGLLELADAAYVGAGV 127

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPLKG 135
            ASA+ MDK  ++ V +  G+     +++ R            + +  +  P  +KP+  
Sbjct: 128 AASAVGMDKELARAVFAQAGLRQTEYLVIRRSAWSADRQGALEEIEAKLRYPLFVKPVNL 187

Query: 136 GSSLGIIVIKKDQSIPLDLLQSS 158
           GSS+GI  +   QS+   +  ++
Sbjct: 188 GSSIGISKVHDSQSLDRAIDLAA 210


>gi|238925027|ref|YP_002938543.1| D-ala D-alanine ligase [Eubacterium rectale ATCC 33656]
 gi|238876702|gb|ACR76409.1| D-ala D-alanine ligase [Eubacterium rectale ATCC 33656]
          Length = 332

 Score =  145 bits (367), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 61/286 (21%), Positives = 123/286 (43%), Gaps = 16/286 (5%)

Query: 22  CASALEDAGFKVSQID-VDRSVGLVLAHLKPD--LAFNVLHGNFGEDGLVQA--ILELLE 76
              A++  G+       +   +  +  +   D  +  N   G   +   +QA  +LE+L 
Sbjct: 37  IMDAIKSLGYNCDYFGGIPELIHAIDTNQSFDDSIFLNFSDGMDEDYSRIQAPALLEILN 96

Query: 77  IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI---SPPYVIKPL 133
           +PY+ SG+  SAL  +K   K+ + + G+ +  S +VN     +   +     P  +KP 
Sbjct: 97  VPYSGSGVFPSALMNNKHFCKKALLNLGIRMPKSCIVNHDFPLNCAQLRKWKYPLFVKPN 156

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHG-DQLLIEQYVDGIELTCGVMGDASLDVTEI 192
             GSSLGI       +I   + + +       +++IE+YV+GI++T  ++G+ +      
Sbjct: 157 CEGSSLGISNDCVCHTIDEVIKKCNKLLMDFQEIIIEEYVEGIDVTNYLIGNNASYYINS 216

Query: 193 AV-------PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
            V            Y    K + L +  +    IP ++ + ++R + L  Q +G   I R
Sbjct: 217 IVTAKLFDESSYAIYGINEKQNKLRTLFIDDEYIPTNLVEAIKRQSILIAQTLGVHDICR 276

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
            D+  +   ++  ++EIN  P  +  S    +A      F +++ +
Sbjct: 277 IDYRVNVSKQEFDFIEINSAPRFSSTSEIGFIAQKNNILFSKMVQY 322


>gi|294507128|ref|YP_003571186.1| D-ala D-ala ligase C-terminus superfamily [Salinibacter ruber M8]
 gi|294343456|emb|CBH24234.1| D-ala D-ala ligase C-terminus superfamily [Salinibacter ruber M8]
          Length = 333

 Score =  145 bits (366), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 62/294 (21%), Positives = 118/294 (40%), Gaps = 18/294 (6%)

Query: 16  LSSGKACASALEDAGFKVSQIDVDRSVGLVLAH-LKPDLAFNVLHGNFGEDG--LVQAIL 72
           + +    A+A+E  G    ++     +   L   L  D A N+  G    +    V  +L
Sbjct: 30  IETVDTLAAAVEHLGHTPVRVGTAADLRDRLGGGLSLDAAINITEGAHSRNREAYVPILL 89

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS--PPYVI 130
           E+  +P   S  L  ++++DK  +K +V++  +P  P  + +         +    P  +
Sbjct: 90  EMAGVPCLGSDALTLSVTLDKAWTKDLVAAADIPTPPHRVYSAPEAVDADDLPGAFPLFV 149

Query: 131 KPLKGGSSLGIIVIKKDQSIPL--DLLQSSSWNHGDQLLIEQYVDGI-ELTCGVMG---D 184
           KP   G+S GI    K + +      +   +  +    + E +V G  E T  V+G    
Sbjct: 150 KPRYEGTSKGITPDSKVEDVAALRGAVDRITTTYDQDAVAEPFVAGGGEFTVAVVGHDPP 209

Query: 185 ASLDVTEIAV-PKSDFYSYELKY-----SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
            +L V +  V P +    + L++     +  +  + L   +   +   +Q L+  A   +
Sbjct: 210 EALPVLQRGVEPTTGLGLHVLEHRGAPTADRDWEYELRGTLAPALEDRLQALSRRAFDTL 269

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
            CR  +R+DF  D      ++LEIN  P   P   F  +A   G  + + L  +
Sbjct: 270 DCRDFARADFRVDG-DGTPWFLEINPLPTFKPDDTFAIVAELMGRDYVDYLAEV 322


>gi|189502683|ref|YP_001958400.1| hypothetical protein Aasi_1367 [Candidatus Amoebophilus asiaticus
           5a2]
 gi|189498124|gb|ACE06671.1| hypothetical protein Aasi_1367 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 421

 Score =  143 bits (362), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 69/302 (22%), Positives = 126/302 (41%), Gaps = 52/302 (17%)

Query: 44  LVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103
             LAHL  D  F  LHG  GEDG +QAILE   +PY  SG+  ++L++DK  + + +   
Sbjct: 110 QELAHL-VDSVFIALHGRPGEDGTLQAILEQHGLPYNGSGVTTTSLTIDKFATNRFLHKH 168

Query: 104 GVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIP--- 151
           G+ V    +V      +         +     P+++KP+  G S+ +  I+    +    
Sbjct: 169 GIYVANQAVVTIDQWKNNTPATIETIEATFKYPFIVKPVDDGCSVAVFKIQNKDMLIAYA 228

Query: 152 -----------------LDLLQSSSWNHGDQLLIEQYVD-GI-----ELTCGVM------ 182
                            L L  ++++ +  Q L+E  ++ G      E+T G++      
Sbjct: 229 ENIFRADSNQPTNLTQVLGLKPNAAFPNYQQFLVEDLIEKGTATHFLEITGGLLTHLDEQ 288

Query: 183 GDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLD------IYKEVQRLAFLA 234
           G+   ++ E    V   D  S E K+ +    ++ PA+   D      I  +V+      
Sbjct: 289 GNRQYEMFEPSEVVATGDILSLEEKFLAGEGQNITPARFHPDPTTNLAISTKVKEDLQKV 348

Query: 235 HQAIGCRGISRSDFLFD--PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
            Q +   G +R D +    P   + + +EIN  P +TP +      A  GY+  + +  +
Sbjct: 349 AQLVNIEGYARIDAMVKIYPTHIETWIIEINTLPALTPATCIFHQCAINGYTPFDFIHTI 408

Query: 293 VE 294
           ++
Sbjct: 409 IQ 410



 Score = 48.2 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 1/37 (2%)

Query: 1  MAVLMGGISSEREVSLSSGKACASALEDAG-FKVSQI 36
          + ++MGG S+ER +S+ SG+     L  +G +    I
Sbjct: 3  IGIIMGGFSAERHISVESGRNVYEKLASSGTYTPIPI 39


>gi|83816045|ref|YP_445261.1| D-alanine--D-alanine ligase superfamily protein [Salinibacter ruber
           DSM 13855]
 gi|83757439|gb|ABC45552.1| D-ala D-ala ligase C-terminus superfamily [Salinibacter ruber DSM
           13855]
          Length = 294

 Score =  143 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 59/284 (20%), Positives = 115/284 (40%), Gaps = 20/284 (7%)

Query: 27  EDAGFKVSQIDVDRSVGLVLAH-LKPDLAFNVLHGNFGEDG--LVQAILELLEIPYTHSG 83
           E  G    ++     +   L   L  D A N+  G    +    V  +LE+  +P   S 
Sbjct: 2   EHLGHTPVRVGTAADLRDRLGEGLSLDAAINITEGAHSRNREAYVPILLEMAGVPCLGSD 61

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS--PPYVIKPLKGGSSLGI 141
            L  ++++DK  +K +V++  +P  P  + +         +    P  +KP   G+S GI
Sbjct: 62  ALTLSVTLDKAWTKDLVAAADIPTPPHRVYSAPEAVDADDLPGAFPLFVKPRYEGTSKGI 121

Query: 142 ---IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI-ELTCGVMG---DASLDVTEIAV 194
                ++   ++   + + ++  +    + E +V G  E T  V+G     +L V +  V
Sbjct: 122 TPDSKVEDVAALRRAVDRITT-TYDQDAVAEPFVAGGGEFTVAVVGHDPPEALPVLQRGV 180

Query: 195 -PKSDFYSYELKY-----SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
            P +    + L++     +  +  + L   +   +   +Q L+  A   + CR  +R+DF
Sbjct: 181 EPTTGLGLHALEHRGAPTADQDWEYELRGTLAPALEDRLQALSRRAFDTLDCRDFARADF 240

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
             D      ++LEIN  P   P   F  +A   G  + + L  +
Sbjct: 241 RVDG-DGTPWFLEINPLPTFKPDDTFAIVAELMGRDYVDYLAEV 283


>gi|76880178|dbj|BAE45861.1| D-alanine-D-alanine ligase [Physcomitrella patens subsp. patens]
          Length = 417

 Score =  142 bits (359), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 68/296 (22%), Positives = 117/296 (39%), Gaps = 65/296 (21%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKV----------------------SQIDV 38
           +A++ GG S ER +SL+S ++    LE     V                      +  D 
Sbjct: 113 VALVCGGPSEERGISLNSARSVLDHLEGGDVSVSCYYMNQKLEPFGIPSALMYSNTPEDF 172

Query: 39  D----------RSVGLVLAHLKP--DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           D          +S    L HL+   D+ F  LHG FGEDG +QA+LE   +PY  +G  A
Sbjct: 173 DFKIASTARSFKSQAEFLEHLQATSDIVFPALHGRFGEDGGIQALLESAGLPYIGTGAAA 232

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP-----------PYVIKPLKG 135
           + ++ DK  +   ++  G    P  LV    +D   L                V+KP + 
Sbjct: 233 AQVAFDKYDAAAEMAWHGFATLPIFLVENGKVDINRLRGWFEDNNINANSGRVVVKPARS 292

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI-ELTCGVMGDA--------S 186
           GSS+G+ V +   +         +    D+++IE + +G  E T  V+           +
Sbjct: 293 GSSVGVSVAEGLDTAVQHAEALFNKGGNDRVVIEMFAEGALEFTALVLDVGFGNETRPVA 352

Query: 187 LDVTEIAVPKSDF----------YSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLA 231
           L  TE+ +   D+          ++Y  KY  +   ++  P +   +   +++  A
Sbjct: 353 LFPTEVELSGLDYESDGENETAIFNYRRKYLPTRQVSYHTPPRFSEETINKIRNRA 408


>gi|229662029|gb|ACQ84447.1| vancomycin resistance protein B [Enterococcus faecalis]
          Length = 160

 Score =  140 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 36/126 (28%), Positives = 65/126 (51%), Gaps = 2/126 (1%)

Query: 49  LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
            + D+AF VLHG  GEDG +Q +  L  IPY    I +SA+ MDK  +  +  + G+ V 
Sbjct: 35  RRIDVAFPVLHGKCGEDGAIQGLFVLSGIPYVGCDIQSSAVCMDKSLAYILTKNAGIAVP 94

Query: 109 PSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168
              ++++        ++ P  +KP + GSS G+  +   + +   +   ++  +  ++LI
Sbjct: 95  EFQMIDKGDKPEAGALTYPVFVKPARLGSSFGVTKVNGTEELNAAI--EAAGQYDGKILI 152

Query: 169 EQYVDG 174
           EQ + G
Sbjct: 153 EQAISG 158


>gi|307322537|ref|ZP_07601883.1| D-alanine--D-alanine ligase [Sinorhizobium meliloti AK83]
 gi|306891819|gb|EFN22659.1| D-alanine--D-alanine ligase [Sinorhizobium meliloti AK83]
          Length = 361

 Score =  140 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 76/334 (22%), Positives = 128/334 (38%), Gaps = 48/334 (14%)

Query: 1   MAVLMGGISSEREVSL---------------------------SSGKACASALEDAGFKV 33
           + ++ GG S E + S+                            +G     ALE      
Sbjct: 3   VTLIYGGRSVEHDWSIAIYNHFAEILNNARDPDISPAFVYYISRTGDLLRLALEGGRLPK 62

Query: 34  SQIDVDRSVGLVLAH----LKPD--LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87
                 R+    LA     L+ D    F++L G  GEDG +QA+ +  +IP +    +++
Sbjct: 63  HPDFTARAETHALASLAHLLRSDGVFVFSLLQGQDGEDGQIQALAQFYDIPGSFGDKVSA 122

Query: 88  ALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ-------HLISPPYVIKPLKGGSSLG 140
            L+ DK     V +     + P   V+    + +         ++ P V+KP   G S  
Sbjct: 123 MLATDKYLQGIVANRLCPELTPIPTVHVVQRNLELGFAKALRRLAGPCVLKPNTLGGSFL 182

Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPK 196
                +     L         H    L+++ + G E TCGV+ D     +L V  I+ P 
Sbjct: 183 TEYTDELSEDRLRSYSERVALHDPSFLVQERIAGTEYTCGVLVDRHEVTALPVARISNP- 241

Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256
           S F  Y+ K     S   L   +   I   +  ++    +        R DF+ D   R 
Sbjct: 242 SGFLGYDQKTQKGYSVDFL--DVEDTIQSRLSSISKQIAREFRVHTFGRLDFIVDEQQR- 298

Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +++LE+N+ PG+T  +IFP+M   AG+    L+ 
Sbjct: 299 IYFLELNLIPGLTAEAIFPKMLTKAGFDLCHLIR 332


>gi|110637336|ref|YP_677543.1| D-alanine--D-alanine ligase A [Cytophaga hutchinsonii ATCC 33406]
 gi|110280017|gb|ABG58203.1| D-alanine--D-alanine ligase A [Cytophaga hutchinsonii ATCC 33406]
          Length = 897

 Score =  140 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 70/331 (21%), Positives = 126/331 (38%), Gaps = 63/331 (19%)

Query: 15  SLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILEL 74
           S+SS +  ++A++         D        L+ L  D  F  LHG  GEDG +Q  LE 
Sbjct: 564 SISS-RYVSNAIK---------DPKEISYKELSEL-VDGVFIALHGRPGEDGSMQKELEK 612

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLIS 125
            ++PY  SGI +S ++++K  + +++   G+ V    +V +            + +    
Sbjct: 613 YQLPYNGSGIQSSQITINKFETNRILREHGISVANHRMVYKQEWLDAGEKLLSEIESGFI 672

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIP--------------------LDLLQSSSWNHGDQ 165
            P + KP   G S  +  IK    +                     L L  +  +   D 
Sbjct: 673 YPIIAKPSDDGCSSAVKKIKNRDELRAYTRLMFGEEAIQGSVSSSVLGLKYNEEFPQKDY 732

Query: 166 LLIEQYVDG------IELTCGVM------GDASLDVTEIA--VPKSDFYSYELKYSSLNS 211
            LIE  V        +E+T G+M      G+   ++ E +  +   D  S E K+ +   
Sbjct: 733 FLIEDLVSKGNAKHFLEVTGGLMTRFNDKGNVEYEIFEPSESLATGDVLSLEEKFLAGEG 792

Query: 212 THVLPAKIP------LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR---KVFWLEI 262
            ++ PA+          +  EV+       + +  +G +R D           +   +E+
Sbjct: 793 QNITPARYTTNKADYEQVASEVRATLKRVAEVLNIQGYARIDAFVRVFENNRSETIIIEV 852

Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           N  PGMTP +      A  GY   + +  ++
Sbjct: 853 NSLPGMTPATCIFHQTAINGYKPYDFIDNIL 883



 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 39/134 (29%), Positives = 61/134 (45%), Gaps = 11/134 (8%)

Query: 38  VDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSK 97
           V R +         D AF  LHG +GEDG +Q +L+   IPY+ SGIL SA+ ++K   K
Sbjct: 98  VGRKIEPSDLKELIDFAFLALHGPYGEDGAIQGMLDWNNIPYSGSGILPSAIGINKYIQK 157

Query: 98  QVVSSCGVPVCPSILVNRFTM-----------DSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           ++V+         +   + T              +  +  P+V+K    GSS+GI VI +
Sbjct: 158 KLVAQASFNGPNYVTYKKSTWLKGADTKALLAHFESSVGFPFVVKAPSQGSSIGITVISE 217

Query: 147 DQSIPLDLLQSSSW 160
                L    + S+
Sbjct: 218 RNEEKLKQALNRSF 231



 Score = 99.4 bits (247), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 34/135 (25%), Positives = 57/135 (42%), Gaps = 7/135 (5%)

Query: 171 YVDGIELTCGVMGDA-----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
           ++ G E +C V+ D      +L  T I V  +DF+ Y  KY    S  + P  IP +  +
Sbjct: 312 FIKGQEFSCIVIQDEDGNPIALPPTGI-VKGNDFFDYRSKYLPGMSRKITPIDIPGEQVE 370

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285
            ++      +  +     +R D    P   +VF  + N   GM P S F   AA  G + 
Sbjct: 371 LIRSECCRLYSTLQFNVYARIDGFISP-EGEVFLNDPNTTSGMMPSSFFFHQAAEIGLNP 429

Query: 286 RELLLWMVEDASCLR 300
            + L +++  +   R
Sbjct: 430 SQFLTYIIRTSIQER 444



 Score = 47.0 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDA-GFKVSQI 36
           +AV+MGG SSER +S+ SG+     L  +  ++   +
Sbjct: 478 IAVVMGGYSSERHISVESGRNIFEKLSSSTKYQPLPV 514


>gi|326433625|gb|EGD79195.1| D-alanine-D-alanine ligase [Salpingoeca sp. ATCC 50818]
          Length = 829

 Score =  139 bits (352), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 57/297 (19%), Positives = 107/297 (36%), Gaps = 50/297 (16%)

Query: 53  LAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
           L  N+       D  ++    A+ +L  +PYT +G    A+  DK        S GVPV 
Sbjct: 530 LVLNLCDEGLFNDARLELHVTALFDLKGLPYTGAGSACLAVCYDKGLVNAAAKSMGVPVP 589

Query: 109 PSILVNRFTMDSQ---------------HLISPPYVIKPLKGGSSLGI---IVIKKDQSI 150
             + V                         +  P  IKP +G  S+GI    ++  ++ +
Sbjct: 590 AEVQVLAHEDVHASTAATPASSAVQRVVAEVGFPAFIKPARGDGSVGITTGSIVHGEEEL 649

Query: 151 PLDL--LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT----------EIAVPKSD 198
              +  +++++      +L+++Y+ G E++ GV+G+ + D            ++ V + D
Sbjct: 650 VAYINTIRAAANVLCKDVLVQEYLQGEEISIGVVGNPAFDAVSGDVDPASIRQLPVLRVD 709

Query: 199 F----------YSYELKYS----SLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGI 243
           +           +YE K+        +    PA  +      ++          +  R  
Sbjct: 710 YSALPSDLPPILAYESKWDPSSPYWTAVSYAPATNLSPSHVAQLYNQCCRLFARLELRDY 769

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
            R D  F         LE+N  PG         M   AG  + +L+  +V +A   R
Sbjct: 770 GRFDLRFSERDNVFKLLEVNPNPGWCWDGKLALMYERAGLPYEQLIADIV-NAGANR 825


>gi|84387437|ref|ZP_00990456.1| D-ala D-ala ligase [Vibrio splendidus 12B01]
 gi|84377690|gb|EAP94554.1| D-ala D-ala ligase [Vibrio splendidus 12B01]
          Length = 384

 Score =  139 bits (352), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 69/343 (20%), Positives = 133/343 (38%), Gaps = 57/343 (16%)

Query: 1   MAVLMGGISSE------REVSLSS-------GKACASALEDAGFKVSQI---DVDRSVGL 44
           +AV+ GG  S+        +S  S           A+AL ++GF++  +   D+D  +  
Sbjct: 20  IAVIHGGDKSQVGSYIFENLSPRSTKTYEPVAHDIANALRESGFELVDVLAEDID--LAK 77

Query: 45  VLAHLKPDLAFNVLHGNFGEDG--LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS 102
            L   K DL      G  G D    + + LE+L +PY     + + +  +K   K  + +
Sbjct: 78  QLESKKIDLVITNSGGLQGFDSMCHLPSTLEMLGVPYVGHSPMTAGILDNKHLFKHEIKA 137

Query: 103 CGVPVCPSILVNRFT-----------MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
            G+P  P I +                D        +V+KP+ G +S+ +  + +   + 
Sbjct: 138 AGIPTAPFITIGIDEDFDSESNQSALDDIARRFPQGFVVKPVSGRASIHVYPVFERSELK 197

Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA--------------SLDVTEIAVPKS 197
             ++        + ++IE Y+ G E    V G+               +  VTE  +   
Sbjct: 198 -AVVNKVRNATNNIVMIEPYLSGREFVVAVAGEYVFKQGALTQSNQPLAFSVTERVLKAD 256

Query: 198 D--FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255
           +  F S ++K     +   L A     +  E+  +    ++ +G + + R D   D    
Sbjct: 257 EPIFTSMDVKPI---TQDRLVAVNDQTLRTELAEIGQKIYRQLGLQTLVRVDLRMD-DEG 312

Query: 256 KVFWLEINVQPGM-----TPVSIFPEMAAYAGYSFRELLLWMV 293
            ++ LE N +P +     + VS+     A  G S+ +L+  +V
Sbjct: 313 SLYVLETNPKPDLKRPEGSKVSLVCHDLAREGMSYTDLIQSLV 355


>gi|307323017|ref|ZP_07602266.1| D-alanine--D-alanine ligase domain protein [Sinorhizobium meliloti
           AK83]
 gi|306891336|gb|EFN22273.1| D-alanine--D-alanine ligase domain protein [Sinorhizobium meliloti
           AK83]
          Length = 280

 Score =  139 bits (352), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 60/266 (22%), Positives = 114/266 (42%), Gaps = 19/266 (7%)

Query: 50  KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC----GV 105
           + +   N+LHG FGEDG +Q +  L  +  +      ++L+M+K      VSS      +
Sbjct: 8   RNEYVVNLLHGQFGEDGGIQTLAALSGVTGSFGDPHVASLTMNKYAMSAFVSSLLPAERI 67

Query: 106 PVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSLGIIV----IKKDQSIPLDLLQS 157
            V  + L+    +D        +  P+V+KP   GSSL   +    I  D+ I    L  
Sbjct: 68  RVPKTTLITPRNVDQLINIARSLDRPFVVKPNSLGSSLFAQLFDDPISSDEEIHT--LLR 125

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV---PKSDFYSYELKYSSLNSTHV 214
             + +    +I++++ G E TCG +  +S  +    V     ++F   + KYS   +   
Sbjct: 126 KIFTYDTAAVIQEFISGDEYTCGCLISSSEVIPLPIVKLEADNEFCGRDQKYSKNVAKKS 185

Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274
           +      +I + +Q +A     +I    ++R DF       ++++LE N  PG      F
Sbjct: 186 V-VNRNDEISERIQNIATSIASSIDLYNMARFDFRVSDED-EIWFLECNYIPGTAKNGSF 243

Query: 275 PEMAAYAGYSFRELLLWMVEDASCLR 300
            +M    G +  +L+  +  ++   +
Sbjct: 244 EKMLNSYGMTVVDLISRITSNSKTFK 269


>gi|158521902|ref|YP_001529772.1| GCN5-related N-acetyltransferase [Desulfococcus oleovorans Hxd3]
 gi|158510728|gb|ABW67695.1| GCN5-related N-acetyltransferase [Desulfococcus oleovorans Hxd3]
          Length = 527

 Score =  139 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 69/310 (22%), Positives = 120/310 (38%), Gaps = 33/310 (10%)

Query: 16  LSSGKACASALEDAGFKVSQI--DVD-RSVGLVLAHLKPDLAFNVLHGNFGEDGLV---Q 69
           LS  +A + AL D G++   +  D+D  ++   L  L PDL FN++    G+  L+    
Sbjct: 34  LSQVEAVSGALSDLGYEPVPLACDLDLEALRRDLVSLCPDLVFNLVESLNGQGRLIHLAP 93

Query: 70  AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-------LVNRFTMDSQH 122
            +LE + IPYT S       + +K  +K  +S  GV     I       +       ++ 
Sbjct: 94  ILLEAMGIPYTGSSAYVIYRTSNKTAAKDHMSQWGVATPSWIGPASLLRIQRTRVNPAER 153

Query: 123 LISPPYVIKPLKGGSSLGI----IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           L +  ++IK +   +S G+    +V        L+ L+  S   G     E Y+ G E  
Sbjct: 154 LPNQSWIIKSVWEHASFGLDENAVVCPDTLGDILNTLKQRSPALGGDCFAEHYIPGREFN 213

Query: 179 CGVMGD----ASLDVTEIAV-----PKSDFYSYELKYSSLNSTHVLP------AKIPLDI 223
             ++ +      L V EI        K     Y  K+   +   +              +
Sbjct: 214 VALIEEAGKPRVLPVAEIRFENYEGEKPAIVCYRAKWEPGSFECLNTVRSFEFPDSDGPL 273

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283
            + V  +A         +G +R DF  D      + LE+N  P ++P + F      AG 
Sbjct: 274 LEGVTSIARHCWDLFHLKGYARVDFRVDDCGN-PWVLEVNANPCLSPDAGFAAAMEQAGI 332

Query: 284 SFRELLLWMV 293
           S+ + +  +V
Sbjct: 333 SYVQAIDAIV 342


>gi|113476540|ref|YP_722601.1| D-alanine--D-alanine ligase [Trichodesmium erythraeum IMS101]
 gi|110167588|gb|ABG52128.1| D-alanine--D-alanine ligase [Trichodesmium erythraeum IMS101]
          Length = 361

 Score =  139 bits (350), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 56/242 (23%), Positives = 105/242 (43%), Gaps = 22/242 (9%)

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKP 132
           ++L +P   S    +AL+ +K +++ VVS+ GV V  +  + R        + PP+V+KP
Sbjct: 111 DMLNLPLVGSPSYCTALATNKAQTRNVVSASGVQVAKAQQLRRGET---LTMKPPFVVKP 167

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLD 188
               +SLG+ ++  +  I   L +   +   D+LL+E Y+ G EL   V+        L 
Sbjct: 168 TSEDNSLGVTLVWDESQIEAALDK--GFELEDKLLVEDYIPGRELRVAVVERKGELQVLP 225

Query: 189 VTEIAVPKSDFYSYELKYSSLNS-------------THVLPAKIPLDIYKEVQRLAFLAH 235
           + E  V +            L S               + PA +  ++++++   A  AH
Sbjct: 226 MIEYLVTEEHPIRTVNDKLVLQSDGTPEKQPEKPIAKPICPANVTPELFEKLANAAKSAH 285

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
            A+GCR  S  DF     + + ++LE  +      +++   M    G S  ++ L +   
Sbjct: 286 IALGCRDYSLYDFRVHTNTNEPYFLEAGLFWTFGKIAMISRMLQADGESLEDVALELWSA 345

Query: 296 AS 297
           A+
Sbjct: 346 AA 347


>gi|284046365|ref|YP_003396705.1| D-alanine--D-alanine ligase [Conexibacter woesei DSM 14684]
 gi|283950586|gb|ADB53330.1| D-alanine--D-alanine ligase [Conexibacter woesei DSM 14684]
          Length = 439

 Score =  138 bits (349), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 57/263 (21%), Positives = 94/263 (35%), Gaps = 60/263 (22%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDL------- 53
           + V+ GG S E +VS+ + +   + L      V  + + +           D+       
Sbjct: 9   VGVVFGGPSVEHDVSIITAQQAMAVL-SERHTVVPLYIGKDGRWWTGEELRDVSAFTQAP 67

Query: 54  ------------------------------------AFNVLHGNFGEDGLVQAILELLEI 77
                                                 N +HG  GEDG +   LEL  +
Sbjct: 68  PRGARAVELRLGAADGPFVEPSTSRLRGDRALAISVVLNAIHGTGGEDGALLGALELSGV 127

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD---------SQHLISPPY 128
           P+   G+ A A+ MDK  +K V+   G+ V P   + R   +             +  P 
Sbjct: 128 PHAGRGVAAFAVGMDKHLAKTVLREAGIDVLPHRRIERGEWEHDRAAVLRSVADEVPLPC 187

Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMG--DA 185
           V+KP   GSS+G+        +   L    ++    Q ++E +  G  EL C V+G    
Sbjct: 188 VVKPATLGSSIGVARCADPAEVEEAL--ELAFELDRQAVVEPFATGATELNCAVLGRPGG 245

Query: 186 SLDVTEIAVPKSDF--YSYELKY 206
            L V+E+  P       ++E KY
Sbjct: 246 ELRVSEVERPLGGEAGLTFEDKY 268



 Score = 65.9 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 8/85 (9%)

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF--DPLSR--KVFWLEINVQPGM 268
            V+PA I  ++ + V+  A  AH+A+   G+ R DF    DP     ++   E N  PG 
Sbjct: 330 RVIPADIAPELRERVRAEAAKAHRALRVAGVVRYDFFVLPDPDGGAERICVNEPNTVPGS 389

Query: 269 TPVSIFPEMAAYAGYSFRELLLWMV 293
               +F       G +F +LL  ++
Sbjct: 390 FAFYLF----EPEGLAFPDLLDELL 410


>gi|327334538|gb|EGE76249.1| D-alanine--D-alanine ligase B [Propionibacterium acnes HL097PA1]
          Length = 178

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 40/146 (27%), Positives = 69/146 (47%), Gaps = 10/146 (6%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VL GG+S +R++SL SG+  A AL   G +V + D+D ++   L      + F +LHG
Sbjct: 5   VVVLAGGLSHQRDISLKSGRTVAQALRRVGHEVVEADIDSALIETLRANDGAVVFPMLHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GE+G +  +L+L+ IPY  S      +S DK  + + V++ G+     + +       
Sbjct: 65  GLGENGALLEVLQLMGIPYVGSSPATCRISFDKSIASRAVATAGIVTPQQVALPHDVFRE 124

Query: 121 ----------QHLISPPYVIKPLKGG 136
                           P ++KP +G 
Sbjct: 125 LGAQTVMRSIAEKFGLPVIVKPARGA 150


>gi|758371|gb|AAA87680.1| putative D-alanine:D-alanine ligase [Weissella confusa]
          Length = 202

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 48/204 (23%), Positives = 96/204 (47%), Gaps = 16/204 (7%)

Query: 71  ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-------QHL 123
           +  LL+ PY  +G  ASA+S DK  +K++++  GV     +L+      +       + L
Sbjct: 1   LFRLLQKPYIGAGTAASAMSFDKDLTKRILNQAGVRNTKYVLLTDQDYQNYTYEGLVKEL 60

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVM 182
            +    +K  K GSS+GI  +         +  +  +++  ++L+E  +    E+   ++
Sbjct: 61  GTEVLFVKAAKQGSSVGISRVTNAAEFEAGVKDALQYDY--KVLVEAALNKPREVFISIL 118

Query: 183 GDASLDVTE---IAVPKSD-FYSYELKYSSLNS-THVLPAKIPLDIYKEVQRLAFLAHQA 237
           G+     +    I +P+ D +Y Y  K+   +     LP ++  D+ KE+  +A  A++A
Sbjct: 119 GNEQPRASRLGGIVLPEQDVWYDYNNKFVDASGMVFELPVELGDDLEKEITDMALTAYKA 178

Query: 238 IGCRGISRSDFLFDPLSRKVFWLE 261
           +G  G++R DF+ D      +  E
Sbjct: 179 LGLVGLTRMDFMIDA-DGTPYLGE 201


>gi|156146022|gb|ABU53072.1| D-alanylalanine synthetase [Streptococcus mitis]
          Length = 147

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 43/146 (29%), Positives = 74/146 (50%), Gaps = 5/146 (3%)

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
           ++ +  ++ P   KP   GSS+GI   +  + +   L    ++ +  ++L+EQ V+  E+
Sbjct: 4   VEVEEKLTYPVFTKPSNMGSSVGISKSENQEELRQALKL--AFQYDSRVLVEQGVNAREI 61

Query: 178 TCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
             G++G+  +  T     V   DFY Y+ KY     T  +PAKI  D+   +++ A  A 
Sbjct: 62  EVGLLGNYDVKSTLPGEVVKDVDFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAF 121

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLE 261
           +AIG  G+SR DF +     +VF  E
Sbjct: 122 RAIGGLGLSRCDFFYTDK-GEVFLNE 146


>gi|332703218|ref|ZP_08423306.1| D-alanine--D-alanine ligase domain protein [Desulfovibrio africanus
           str. Walvis Bay]
 gi|332553367|gb|EGJ50411.1| D-alanine--D-alanine ligase domain protein [Desulfovibrio africanus
           str. Walvis Bay]
          Length = 341

 Score =  137 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 74/331 (22%), Positives = 132/331 (39%), Gaps = 37/331 (11%)

Query: 1   MAVLM----GGISSEREVSLSSGKACASALEDAGFK----VSQIDVDRSVGLVLAHLKPD 52
           +A+L     G    E + +L   +A   AL             +D+D + G  LA ++P+
Sbjct: 3   VAILYNLPAGDRPDEAD-TLVQVRAVRQALFAMDHMPIGVAFSLDLDDARG-TLAAMRPN 60

Query: 53  LAFNVLHGNFGEDGLV---QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109
             FN++    G   L     A+LE + +P+T  G  +  LS  K+  K+V+++ G+P  P
Sbjct: 61  CVFNLVEDVGGSSRLAHLAPALLEHMGMPFTGCGSESMLLSTSKLACKRVLTAAGIPTPP 120

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS-IPLDLLQSSSWNH---GDQ 165
               +    +    +   Y++K +   +SLG+      Q+  P DL +  +      G +
Sbjct: 121 W---SEGLPEETSFVPGRYILKSVYEHASLGLDETSVVQASSPADLAKPLARRRERFGGR 177

Query: 166 LLIEQYVDGIELTCGVM----GDASLDVTEIAV-----PKSDFYSYELKYSSLNSTHVLP 216
              E +VDG E    V+    G   L   EI        +     Y  K+   +  +   
Sbjct: 178 WFAEGFVDGREFNIAVIDGPNGPEVLPHAEIVFRGFSKERLRIVGYRAKWDEDSFEYENT 237

Query: 217 ------AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270
                       I  ++ + A    +A G  G +R DF         + +++N  P ++P
Sbjct: 238 QRRFDFPDKDAQILAQLSQSALGCWRAFGLTGYARVDFRV-AEDGTPWIIDVNANPCLSP 296

Query: 271 VSIFPEMAAYAGYSFRELLLWMVE-DASCLR 300
            + F   A  AG  F  L+  ++E  A+  R
Sbjct: 297 DAGFAAAAGRAGMDFTALVSRVLEIGAANTR 327


>gi|156146036|gb|ABU53079.1| D-alanylalanine synthetase [Streptococcus mitis]
 gi|156146044|gb|ABU53083.1| D-alanylalanine synthetase [Streptococcus mitis]
          Length = 147

 Score =  137 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 43/146 (29%), Positives = 73/146 (50%), Gaps = 5/146 (3%)

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            + +  ++ P   KP   GSS+GI   +  + +   L    ++ +  ++L+EQ V+  E+
Sbjct: 4   AEVEEKLTYPVFTKPSNMGSSVGISKSENQEELRQALKL--AFQYDSRVLVEQGVNAREI 61

Query: 178 TCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
             G++G+  +  T     V   DFY Y+ KY     T  +PAKI  D+   ++R A  A 
Sbjct: 62  EVGLLGNYDVKSTLPGEVVKDVDFYDYDAKYIDNKITMDIPAKISDDVIAVMRRNAETAF 121

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLE 261
           +AIG  G+SR DF +     ++F  E
Sbjct: 122 RAIGGLGLSRCDFFYTDK-GEIFLNE 146


>gi|156146042|gb|ABU53082.1| D-alanylalanine synthetase [Streptococcus mitis]
 gi|156146046|gb|ABU53084.1| D-alanylalanine synthetase [Streptococcus mitis]
 gi|156146052|gb|ABU53087.1| D-alanylalanine synthetase [Streptococcus mitis]
          Length = 147

 Score =  136 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 42/146 (28%), Positives = 73/146 (50%), Gaps = 5/146 (3%)

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            + +  ++ P   KP   GSS+GI   +  + +   L    ++ +  ++L+EQ V+  E+
Sbjct: 4   AEVEEKLTYPVFTKPSNMGSSVGISKSENQEELRQALKL--AFQYDSRVLVEQGVNAREI 61

Query: 178 TCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
             G++G+  +  T     V   DFY Y+ KY     T  +PAKI  D+   +++ A  A 
Sbjct: 62  EVGLLGNYDVKSTLPGEVVKDVDFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAF 121

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLE 261
           +AIG  G+SR DF +     ++F  E
Sbjct: 122 RAIGGLGLSRCDFFYTDK-GEIFLNE 146


>gi|156146038|gb|ABU53080.1| D-alanylalanine synthetase [Streptococcus mitis]
          Length = 147

 Score =  136 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 43/146 (29%), Positives = 73/146 (50%), Gaps = 5/146 (3%)

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            + +  ++ P   KP   GSS+GI   +  + +   L    ++ +  ++L+EQ V+  E+
Sbjct: 4   AEVEEKLTYPVFTKPSNMGSSVGISKSENQEELRQALKL--AFQYDSRVLVEQGVNAREI 61

Query: 178 TCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
             G++G+  +  T     V   DFY Y+ KY     T  +PAKI  D+   +++ A  A 
Sbjct: 62  EVGLLGNYDVKSTLPGEVVKDVDFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAF 121

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLE 261
           +AIG  G+SR DF +     +VF  E
Sbjct: 122 RAIGGLGLSRCDFFYTDK-GEVFLNE 146


>gi|156146034|gb|ABU53078.1| D-alanylalanine synthetase [Streptococcus mitis]
          Length = 147

 Score =  136 bits (342), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 41/145 (28%), Positives = 72/145 (49%), Gaps = 5/145 (3%)

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           + +  ++ P   KP   GSS+GI   +  + +   L    ++ +  ++L+EQ V+  E+ 
Sbjct: 5   EVEEKLTYPVFTKPSNMGSSVGISKSENQEELRQALKL--AFQYDSRVLVEQGVNAREIE 62

Query: 179 CGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
            G++G+  +  T     V    FY Y+ KY     T  +PAKI  D+   +++ A  A +
Sbjct: 63  VGLLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAFR 122

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLE 261
           AIG  G+SR DF +     ++F  E
Sbjct: 123 AIGGLGLSRCDFFYTDK-GEIFLNE 146


>gi|156146848|gb|ABU53436.1| D-alanylalanine synthetase [Streptococcus viridans]
          Length = 147

 Score =  135 bits (341), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 42/146 (28%), Positives = 72/146 (49%), Gaps = 5/146 (3%)

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            + +  ++ P   KP   GSS+GI   +  + +   L    ++ +  ++L+EQ V+  E+
Sbjct: 4   AEVEEKLTYPVFTKPSNMGSSVGISKSENKEELHQAL--ELAFKYDSRVLVEQGVNAREI 61

Query: 178 TCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
             G++G+  +  T     V    FY Y+ KY     T  +PAKI  D+   +++ A  A 
Sbjct: 62  EVGLLGNYGVKSTLPGEVVKDVAFYDYDAKYIDNKITMDIPAKISDDVIALMRKNAETAF 121

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLE 261
           +AIG  G+SR DF +     +VF  E
Sbjct: 122 RAIGGLGLSRCDFFYTDK-GEVFLNE 146


>gi|40204849|emb|CAF02025.1| D-alanine:D-alanine ligase [Streptococcus mitis B6]
 gi|156146018|gb|ABU53070.1| D-alanylalanine synthetase [Streptococcus mitis B6]
          Length = 147

 Score =  135 bits (341), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 41/145 (28%), Positives = 72/145 (49%), Gaps = 5/145 (3%)

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           + +  ++ P   KP   GSS+GI   +  + +   L    ++ +  ++L+EQ V+  E+ 
Sbjct: 5   EVEEKLNYPVFTKPSNMGSSVGISKSENQEELRQALKL--AFQYDSRVLVEQGVNAREIE 62

Query: 179 CGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
            G++G+  +  T     V    FY Y+ KY     T  +PAKI  D+   +++ A  A +
Sbjct: 63  VGLLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAFR 122

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLE 261
           AIG  G+SR DF +     ++F  E
Sbjct: 123 AIGGLGLSRCDFFYTDK-GEIFLNE 146


>gi|254411813|ref|ZP_05025589.1| D-ala D-ala ligase C-terminus family [Microcoleus chthonoplastes
           PCC 7420]
 gi|196181535|gb|EDX76523.1| D-ala D-ala ligase C-terminus family [Microcoleus chthonoplastes
           PCC 7420]
          Length = 340

 Score =  135 bits (341), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 75/287 (26%), Positives = 129/287 (44%), Gaps = 37/287 (12%)

Query: 37  DVDRSVGLVLAH-------LKPDLAFN---VLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           D+D +  + LA           DL       + G        + + +LL IPY  +    
Sbjct: 62  DIDAAKPISLAEAIQWITTQNIDLVLPQMFCIPGMT----HYRGLFDLLNIPYVGNKAEL 117

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            AL+  K ++K +V++ GV V    L+++        + PP VIKP    +SLG+ +++ 
Sbjct: 118 MALTAHKAKAKAIVAAAGVKVPYGELLHQGDT---PNLMPPVVIKPANSDNSLGVTLVRN 174

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCG-VMGDAS---LDVTEIAVPKSDF-- 199
                  L Q  ++++ D++L+E Y++ G E+ CG  + + +   L + E +V   +   
Sbjct: 175 MADYDEALTQ--AFHYADEVLVEDYIELGREVRCGTFVKNGTLIGLPLEEYSVNTQNHPI 232

Query: 200 --YSYELKYSS--------LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
             YS +LK +          N+           I  +VQ +A   H+A+GCR  S  DF 
Sbjct: 233 RNYSDKLKKTETGELTCAAKNNEKAWIVDTTDPITTKVQDVAKQCHKALGCRHYSLFDFR 292

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            DP   + ++LE  +    +P S+   MA  AG S  ELL   + +A
Sbjct: 293 IDPQ-GQPWFLEAGLYCSFSPKSVVACMAKAAGISVDELLKTAIAEA 338


>gi|156146874|gb|ABU53449.1| D-alanylalanine synthetase [Streptococcus oralis]
 gi|156146878|gb|ABU53451.1| D-alanylalanine synthetase [Streptococcus oralis]
 gi|156146880|gb|ABU53452.1| D-alanylalanine synthetase [Streptococcus oralis]
 gi|156146888|gb|ABU53456.1| D-alanylalanine synthetase [Streptococcus oralis]
 gi|156146890|gb|ABU53457.1| D-alanylalanine synthetase [Streptococcus oralis]
 gi|156146902|gb|ABU53463.1| D-alanylalanine synthetase [Streptococcus oralis]
          Length = 147

 Score =  135 bits (341), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 42/145 (28%), Positives = 72/145 (49%), Gaps = 5/145 (3%)

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           + +  ++ P   KP   GSS+GI   +  + +   L    ++ +  ++L+EQ V+  E+ 
Sbjct: 5   EVEEKLTYPVFTKPSNMGSSVGISKSENQEELRQALKL--AFQYDSRVLVEQGVNAREIE 62

Query: 179 CGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
            G++G+  +  T     V    FY Y+ KY     T  +PAKI  D+   +++ A  A +
Sbjct: 63  VGLLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAFR 122

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLE 261
           AIG  G+SR DF +     +VF  E
Sbjct: 123 AIGGLGLSRCDFFYTDK-GEVFLNE 146


>gi|156146826|gb|ABU53425.1| D-alanylalanine synthetase [Streptococcus oralis]
          Length = 147

 Score =  135 bits (341), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 41/146 (28%), Positives = 72/146 (49%), Gaps = 5/146 (3%)

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            + +  ++ P   KP   GSS+GI   +  + +   L    ++ +  ++L+EQ V+  E+
Sbjct: 4   AEVEEKLTYPVFTKPSNMGSSVGISKSENQEELLQAL--ELAFQYDSRVLVEQGVNAREI 61

Query: 178 TCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
             G++G+  +  T     V    FY Y+ KY     T  +PA+I  D+   ++R A  A 
Sbjct: 62  EVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKITMDIPARISEDVVAVMRRNAETAF 121

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLE 261
           +AIG  G+SR DF +     ++F  E
Sbjct: 122 RAIGGLGLSRCDFFYTDK-GEIFLNE 146


>gi|156146014|gb|ABU53068.1| D-alanylalanine synthetase [Streptococcus mitis]
          Length = 147

 Score =  135 bits (341), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 42/146 (28%), Positives = 73/146 (50%), Gaps = 5/146 (3%)

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
           ++ +  ++ P   KP   GSS+GI   +  + +   L    ++ +  ++L+EQ V+  E+
Sbjct: 4   VEVEEKLTYPVFTKPSNMGSSVGISKSENQEELRQALKL--AFQYDSRVLVEQGVNAREI 61

Query: 178 TCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
             G++G+  +  T     V    FY Y+ KY     T  +PAKI  D+   +++ A  A 
Sbjct: 62  EVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAF 121

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLE 261
           +AIG  G+SR DF +     +VF  E
Sbjct: 122 RAIGGLGLSRCDFFYTDK-GEVFLNE 146


>gi|148711777|gb|ABR02315.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711813|gb|ABR02333.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711817|gb|ABR02335.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
          Length = 147

 Score =  135 bits (341), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 42/146 (28%), Positives = 73/146 (50%), Gaps = 5/146 (3%)

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
           ++ +  ++ P   KP   GSS+GI   +  + +   L    ++ +  ++L+EQ VD  E+
Sbjct: 4   VEVEEKLTYPVFTKPSNMGSSVGISKSENQEELRQALKL--AFQYDSRVLVEQGVDAREI 61

Query: 178 TCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
             G++G+  +  T     V    FY Y+ KY     T  +PAKI  D+   +++ A  A 
Sbjct: 62  EVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAF 121

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLE 261
           +AIG  G+SR DF +     ++F  E
Sbjct: 122 RAIGGLGLSRCDFFYTDK-GEIFLNE 146


>gi|156146020|gb|ABU53071.1| D-alanylalanine synthetase [Streptococcus mitis]
          Length = 147

 Score =  135 bits (341), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 41/145 (28%), Positives = 72/145 (49%), Gaps = 5/145 (3%)

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           + +  ++ P   KP   GSS+GI   +  + +   L    ++ +  ++L+EQ V+  E+ 
Sbjct: 5   EVEEKLTYPVFTKPSNMGSSVGISKSENQEELRQALKL--AFQYDSRVLVEQGVNAREIE 62

Query: 179 CGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
            G++G+  +  T     V    FY Y+ KY     T  +PAKI  D+   +++ A  A +
Sbjct: 63  VGLLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAFR 122

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLE 261
           AIG  G+SR DF +     ++F  E
Sbjct: 123 AIGGLGLSRCDFFYTDK-GEIFLNE 146


>gi|149908009|ref|ZP_01896677.1| D-alanylalanine synthetase [Moritella sp. PE36]
 gi|149809015|gb|EDM68946.1| D-alanylalanine synthetase [Moritella sp. PE36]
          Length = 384

 Score =  135 bits (341), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 64/307 (20%), Positives = 120/307 (39%), Gaps = 40/307 (13%)

Query: 22  CASALEDAGFKVSQIDV---DRSVGLVLAHLKPDLAFNVLHGNFGEDG--LVQAILELLE 76
            A AL ++GF+   IDV   +  +   L  L  DL      G  G D    + ++LE+L 
Sbjct: 54  IADALRESGFQ--HIDVLPENMDLPQRLKALNIDLVITNSGGLQGFDSMCHLPSMLEMLG 111

Query: 77  IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL----------VNRFTMDS-QHLIS 125
           +PY     + + L  +K   K  + + G+P  P I           VN+  +D       
Sbjct: 112 VPYVGHSPMTAGLLDNKHLFKHEIKAAGIPTAPFITVGLGECITDAVNKEALDQIDADFG 171

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG-- 183
             +++KP+ G +S+ +  +     +   +    +    + ++IE Y+ G E    V G  
Sbjct: 172 GRFIVKPVSGRASIHVYPVFDRADLAGKVKIVQA-ATNNIVMIEPYLSGREFVVAVAGSV 230

Query: 184 ------------DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
                         +  VTE  +   +     +    + S  +L    P ++ + +  L 
Sbjct: 231 IFKNDKLNQLDSPFAFSVTERVLADDEPIFTSMDVKPITSDRLLKVDEP-ELRQSLIDLG 289

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM-----TPVSIFPEMAAYAGYSFR 286
              +Q +G   + R D   D    K++ LE N +P +       +SI        G S++
Sbjct: 290 NKIYQQLGLGTLVRVDLRMDCK-GKLYVLEANPKPDLKRPEGDKLSIVCHDIHNEGMSYQ 348

Query: 287 ELLLWMV 293
           +L+  +V
Sbjct: 349 DLIQSLV 355


>gi|156146904|gb|ABU53464.1| D-alanylalanine synthetase [Streptococcus viridans]
          Length = 147

 Score =  135 bits (341), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 43/146 (29%), Positives = 72/146 (49%), Gaps = 5/146 (3%)

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            + +  ++ P   KP   GSS+GI   +  + +   L    ++ +  ++L+EQ V   E+
Sbjct: 4   AEVEEKLTYPVFTKPSNMGSSVGISKSENKEELHQAL--ELAFKYDSRVLVEQGVSAREI 61

Query: 178 TCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
             G++G+  +  T     V    FY YE KY     T  +PAKI  D+   +++ A  A 
Sbjct: 62  EVGLLGNYDVKSTLPGEVVKDVAFYDYEAKYIDNKITMDIPAKISDDVVAIMRKNAETAF 121

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLE 261
           +AIG  G+SR DF +   + +VF  E
Sbjct: 122 RAIGGLGLSRCDFFYT-YNGEVFLNE 146


>gi|156146868|gb|ABU53446.1| D-alanylalanine synthetase [Streptococcus oralis]
          Length = 147

 Score =  135 bits (341), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 41/146 (28%), Positives = 72/146 (49%), Gaps = 5/146 (3%)

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            + +  ++ P   KP   GSS+GI   +  + +   L    ++ +  ++L+EQ V+  E+
Sbjct: 4   AEVEEKLTYPVFTKPSNMGSSVGISKSENQEELRQAL--ELAFRYDSRVLVEQGVNAREI 61

Query: 178 TCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
             G++G+  +  T     V    FY Y+ KY     T  +PAKI  D+   +++ A  A 
Sbjct: 62  EVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAF 121

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLE 261
           +AIG  G+SR DF +     ++F  E
Sbjct: 122 RAIGGLGLSRCDFFYTDK-GEIFLNE 146


>gi|3821389|emb|CAA13261.1| D-alanine D-alanine ligase [Streptococcus pneumoniae]
 gi|3821421|emb|CAA13277.1| D-alanine D-alanine ligase [Streptococcus pneumoniae]
 gi|148711419|gb|ABR02136.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711475|gb|ABR02164.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711477|gb|ABR02165.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
          Length = 147

 Score =  135 bits (341), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 42/146 (28%), Positives = 73/146 (50%), Gaps = 5/146 (3%)

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            + +  ++ P   KP   GSS+GI   +  + +   L    ++ +  ++L+EQ V+  E+
Sbjct: 4   AEVEEKLAYPVFTKPSNMGSSVGISKSENQEELRQALKL--AFRYDSRVLVEQGVNAREI 61

Query: 178 TCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
             G++G+  +  T     V    FY Y+ KY   N T  +PAKI  D+   +++ A  A 
Sbjct: 62  EVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNNITMDIPAKISDDVVAVMRQNAETAF 121

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLE 261
           +AIG  G+SR DF +     ++F  E
Sbjct: 122 RAIGGLGLSRCDFFYTDK-GEIFLNE 146


>gi|156146004|gb|ABU53063.1| D-alanylalanine synthetase [Streptococcus mitis]
          Length = 147

 Score =  135 bits (341), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 41/146 (28%), Positives = 72/146 (49%), Gaps = 5/146 (3%)

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            + +  ++ P   KP   GSS+GI   +  + +   L    ++ +  ++L+EQ V+  E+
Sbjct: 4   AEVEEKLTYPVFTKPSNMGSSVGISKSENQEELRQALKL--AFQYDSRVLVEQGVNAREI 61

Query: 178 TCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
             G++G+  +  T     V    FY Y+ KY     T  +PAKI  D+   +++ A  A 
Sbjct: 62  EVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAF 121

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLE 261
           +AIG  G+SR DF +     ++F  E
Sbjct: 122 RAIGGLGLSRCDFFYTDK-GEIFLNE 146


>gi|156146040|gb|ABU53081.1| D-alanylalanine synthetase [Streptococcus mitis]
          Length = 147

 Score =  135 bits (340), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 41/146 (28%), Positives = 71/146 (48%), Gaps = 5/146 (3%)

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            + +  ++ P   KP   GSS+GI   +    +   L    ++ +  ++L+EQ V+  E+
Sbjct: 4   AEVEEKLTYPVFTKPSNMGSSVGISKSENQDELRQALKL--AFQYDSRVLVEQGVNAREI 61

Query: 178 TCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
             G++G+  +  T     V    FY Y+ KY     T  +PAKI  D+   +++ A  A 
Sbjct: 62  EVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKITMDIPAKISDDVAAVMRQNAETAF 121

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLE 261
           +AIG  G+SR DF +     ++F  E
Sbjct: 122 RAIGGLGLSRCDFFYTDK-GEIFLNE 146


>gi|156146838|gb|ABU53431.1| D-alanylalanine synthetase [Streptococcus oralis]
 gi|156146840|gb|ABU53432.1| D-alanylalanine synthetase [Streptococcus oralis]
 gi|156146844|gb|ABU53434.1| D-alanylalanine synthetase [Streptococcus oralis]
 gi|156146846|gb|ABU53435.1| D-alanylalanine synthetase [Streptococcus oralis]
 gi|156146850|gb|ABU53437.1| D-alanylalanine synthetase [Streptococcus oralis]
 gi|156146852|gb|ABU53438.1| D-alanylalanine synthetase [Streptococcus oralis]
 gi|156146854|gb|ABU53439.1| D-alanylalanine synthetase [Streptococcus oralis]
 gi|156146856|gb|ABU53440.1| D-alanylalanine synthetase [Streptococcus oralis]
 gi|156146876|gb|ABU53450.1| D-alanylalanine synthetase [Streptococcus oralis]
          Length = 147

 Score =  135 bits (340), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 42/146 (28%), Positives = 72/146 (49%), Gaps = 5/146 (3%)

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            + +  ++ P   KP   GSS+GI   +  + +   L    ++ +  ++L+EQ V+  E+
Sbjct: 4   AEVEEKLTYPVFTKPSNMGSSVGISKSENQEELRQAL--ELAFQYDSRVLVEQGVNAREI 61

Query: 178 TCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
             G++G+  +  T     V    FY Y+ KY     T  +PAKI  D+   +++ A  A 
Sbjct: 62  EVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAF 121

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLE 261
           +AIG  G+SR DF +     +VF  E
Sbjct: 122 RAIGGLGLSRCDFFYTDK-GEVFLNE 146


>gi|3821377|emb|CAA13255.1| D-alanine D-alanine ligase [Streptococcus pneumoniae]
          Length = 147

 Score =  135 bits (340), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 41/146 (28%), Positives = 72/146 (49%), Gaps = 5/146 (3%)

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            + +  ++ P   KP   GSS+GI   +  + +   L    ++ +  ++L+EQ V+  E+
Sbjct: 4   AEVEEKLTYPVFTKPSNMGSSVGISKSENQEELRQALKL--AFQYDSRVLVEQGVNAREI 61

Query: 178 TCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
             G++G+  +  T     V    FY Y+ KY     T  +PAKI  D+   +++ A  A 
Sbjct: 62  EVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKITMDIPAKISDDVVAIMRQNAETAF 121

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLE 261
           +AIG  G+SR DF +     ++F  E
Sbjct: 122 RAIGGLGLSRCDFFYTDK-GEIFLNE 146


>gi|294084785|ref|YP_003551543.1| D-alanine--D-alanine ligase [Candidatus Puniceispirillum marinum
           IMCC1322]
 gi|292664358|gb|ADE39459.1| D-alanine--D-alanine ligase [Candidatus Puniceispirillum marinum
           IMCC1322]
          Length = 375

 Score =  135 bits (340), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 65/291 (22%), Positives = 125/291 (42%), Gaps = 22/291 (7%)

Query: 19  GKACASALEDAGFKVSQIDVDR-SVGLVLAHLKPDLAFN-VLHGNFGEDGL-VQAILELL 75
            K   S L     KVS  ++        LA  KPDL F+ V +  F E+ + +   LEL 
Sbjct: 83  AKLIHSILSKKYSKVSITEISTLECLTKLAKRKPDLVFSGVKYFEFEENQIWLNDFLELN 142

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTMDSQHLISPPYVIKPL 133
            I Y  S   A      K  +K +V   G+     +++  N+ ++D+   I  P  +KP+
Sbjct: 143 HIRYIGSNHAALDREHHKGFAKSIVKQAGILTADYVIINTNKVSVDNNMNIPYPVFVKPV 202

Query: 134 KGGSSLG---IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA----- 185
           +GG S+G   + ++   + +   + Q  +  + D  L+E Y+ G E + G++ D      
Sbjct: 203 RGGDSIGIDDLSLVFDRKQLDAKVDQICNVLNCD-ALVESYLTGREFSVGILEDERTNLL 261

Query: 186 SLDVTEIAVPKSD----FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241
           +    EI  PK++       +E+K     +   +       ++K++  +   A +A+G R
Sbjct: 262 TAMPIEIIAPKNERGHRVLDHEIKRLDQETVRKVK---NKTLHKKLSEVGKSAFKALGGR 318

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
              R D           ++E N+ PG++    +   A     ++ +++L +
Sbjct: 319 SFGRIDIRLCAK-GLPHFVEANLMPGLSKGYFYRSCALNLNMTYDDMILLL 368


>gi|148711765|gb|ABR02309.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
          Length = 147

 Score =  135 bits (340), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 41/146 (28%), Positives = 72/146 (49%), Gaps = 5/146 (3%)

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            + +  ++ P   KP   GSS+GI   +  + +   L    ++ +  ++L+EQ V+  E+
Sbjct: 4   AEVEEKLTYPVFTKPSNMGSSVGISKSENQEELRQAL--ELAFQYDSRVLVEQGVNAREI 61

Query: 178 TCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
             G++G+  +  T     V    FY Y+ KY     T  +PAKI  D+   +++ A  A 
Sbjct: 62  EVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKVTMDIPAKISDDVVAVMRQNAETAF 121

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLE 261
           +AIG  G+SR DF +     ++F  E
Sbjct: 122 RAIGGLGLSRCDFFYTDK-GEIFLNE 146


>gi|156146892|gb|ABU53458.1| D-alanylalanine synthetase [Streptococcus oralis]
          Length = 147

 Score =  135 bits (340), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 41/143 (28%), Positives = 71/143 (49%), Gaps = 5/143 (3%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   +    +   L    ++ +  ++L+EQ V   E+  G
Sbjct: 7   EKELTYPVFTKPSNMGSSVGISKAENQAELRQSL--ELAFKYDSRVLVEQGVVAREIEVG 64

Query: 181 VMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           ++G+  +  T     V    FY YE KY     T  +PA+IP ++   +++ A LA +AI
Sbjct: 65  LLGNYDVKSTLPGEVVKDVAFYDYEAKYIDNKITMAIPAEIPAEVAATMRQNAELAFRAI 124

Query: 239 GCRGISRSDFLFDPLSRKVFWLE 261
           G +G+SR DF +      ++  E
Sbjct: 125 GGKGLSRCDFFYTE-DGGIYLNE 146


>gi|6434091|emb|CAB60642.1| D-ala,D-ala ligase [Streptococcus pneumoniae]
 gi|6634601|emb|CAB64491.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae]
          Length = 147

 Score =  135 bits (340), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 41/146 (28%), Positives = 72/146 (49%), Gaps = 5/146 (3%)

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            + +  ++ P   KP   GSS+GI   +  + +   L    ++ +  ++L+EQ V+  E+
Sbjct: 4   AEVEEKLAYPVFTKPSNMGSSVGISKAENQEELRQALKL--AFRYDSRVLVEQGVNAREI 61

Query: 178 TCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
             G++G+  +  T     V    FY Y+ KY     T  +PAKI  D+   +++ A  A 
Sbjct: 62  EVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAF 121

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLE 261
           +AIG  G+SR DF +     ++F  E
Sbjct: 122 RAIGGLGLSRCDFFYTDK-GEIFLNE 146


>gi|156146830|gb|ABU53427.1| D-alanylalanine synthetase [Streptococcus oralis]
          Length = 147

 Score =  135 bits (340), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 41/146 (28%), Positives = 71/146 (48%), Gaps = 5/146 (3%)

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            + +  ++ P   KP   GSS+GI   +  + +   L    ++ +  ++L+EQ V+  E+
Sbjct: 4   AEVEEKLTYPVFTKPSNMGSSVGISKSENQEELRQAL--ELAFQYDSRVLVEQGVNAREI 61

Query: 178 TCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
             G++G+  +  T     V    FY Y+ KY     T  +PAKI  D+   ++  A  A 
Sbjct: 62  EVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKITMDIPAKISDDVAAVMRHNAETAF 121

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLE 261
           +AIG  G+SR DF +     ++F  E
Sbjct: 122 RAIGGLGLSRCDFFYTDK-GEIFLNE 146


>gi|156146824|gb|ABU53424.1| D-alanylalanine synthetase [Streptococcus oralis]
 gi|156146864|gb|ABU53444.1| D-alanylalanine synthetase [Streptococcus oralis]
          Length = 147

 Score =  135 bits (340), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 41/146 (28%), Positives = 72/146 (49%), Gaps = 5/146 (3%)

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            + +  ++ P   KP   GSS+GI   +  + +   L    ++ +  ++L+EQ V+  E+
Sbjct: 4   AEVEEKLTYPVFTKPSNMGSSVGISKSENQEELRQAL--ELAFQYDSRVLVEQGVNAREI 61

Query: 178 TCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
             G++G+  +  T     V    FY Y+ KY     T  +PA+I  D+   ++R A  A 
Sbjct: 62  EVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKITMDIPARISDDVVAVMRRNAETAF 121

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLE 261
           +AIG  G+SR DF +     ++F  E
Sbjct: 122 RAIGGLGLSRCDFFYTDK-GEIFLNE 146


>gi|156146002|gb|ABU53062.1| D-alanylalanine synthetase [Streptococcus mitis]
          Length = 147

 Score =  135 bits (340), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 41/146 (28%), Positives = 72/146 (49%), Gaps = 5/146 (3%)

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            + +  ++ P   KP   GSS+GI   +  + +   L    ++ +  ++L+EQ V+  E+
Sbjct: 4   AEVEEKLTYPVFTKPSNMGSSVGISKSENQEELRQALKL--AFRYDSRVLVEQGVNAREI 61

Query: 178 TCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
             G++G+  +  T     V    FY Y+ KY     T  +PAKI  D+   +++ A  A 
Sbjct: 62  EVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAF 121

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLE 261
           +AIG  G+SR DF +     ++F  E
Sbjct: 122 RAIGGLGLSRCDFFYTDK-GEIFLNE 146


>gi|6634605|emb|CAB64493.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae]
 gi|148711587|gb|ABR02220.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711647|gb|ABR02250.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711771|gb|ABR02312.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711773|gb|ABR02313.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711795|gb|ABR02324.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711819|gb|ABR02336.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
          Length = 147

 Score =  135 bits (340), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 41/146 (28%), Positives = 72/146 (49%), Gaps = 5/146 (3%)

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            + +  ++ P   KP   GSS+GI   +  + +   L    ++ +  ++L+EQ V+  E+
Sbjct: 4   AEVEEKLTYPVFTKPSNMGSSVGISKSENQEELRQAL--ELAFQYDSRVLVEQGVNAREI 61

Query: 178 TCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
             G++G+  +  T     V    FY Y+ KY     T  +PAKI  D+   +++ A  A 
Sbjct: 62  EVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAF 121

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLE 261
           +AIG  G+SR DF +     ++F  E
Sbjct: 122 RAIGGLGLSRCDFFYTDK-GEIFLNE 146


>gi|6634607|emb|CAB64494.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae]
          Length = 147

 Score =  135 bits (340), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 41/146 (28%), Positives = 73/146 (50%), Gaps = 5/146 (3%)

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            + +  ++ P   KP   GSS+GI   +  + +   L    ++ +  ++L+EQ V+  E+
Sbjct: 4   AEVEEKLTYPVFTKPSNMGSSVGISKSENQEELRQALKL--AFQYDSRVLVEQGVNAREI 61

Query: 178 TCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
             G++G+ ++  T     V    FY Y+ KY     T  +PAKI  D+   +++ A  A 
Sbjct: 62  EVGLLGNYNVKSTLPGEVVKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAF 121

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLE 261
           +AIG  G+SR DF +     ++F  E
Sbjct: 122 RAIGGLGLSRCDFFYTDK-GEIFLNE 146


>gi|302341652|ref|YP_003806181.1| D-alanine--D-alanine ligase domain protein [Desulfarculus baarsii
           DSM 2075]
 gi|301638265|gb|ADK83587.1| D-alanine--D-alanine ligase domain protein [Desulfarculus baarsii
           DSM 2075]
          Length = 340

 Score =  135 bits (340), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 60/311 (19%), Positives = 116/311 (37%), Gaps = 30/311 (9%)

Query: 16  LSSGKACASALEDAGFKVSQI----DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLV--- 68
           +       +AL   G +   +    +VD++    L  L+PD+ FN++    G   ++   
Sbjct: 22  VVQASQVLAALGRLGHRAQGLAFGPEVDQT-RQALEELRPDVVFNLVETPLGMARMIHLA 80

Query: 69  QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPY 128
             +LE L + YT +G     L+  K+ +K+ +    +P           +    L     
Sbjct: 81  PLLLERLRLRYTGAGARGMLLTSQKLLAKKAMRESNLPTPDWCGPRDDGLPFSPLRRY-- 138

Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG----DQLLIEQYVDGIELTCGVM-- 182
           ++K +    S+G+      + +    ++++    G         E Y+DG E    ++  
Sbjct: 139 IVKSVWEHGSVGLDDHSIIKPLGRAAMRAAIAQRGKALGGDCFAEAYIDGREFNIAILAG 198

Query: 183 --GDASLDVTEI-----AVPKSDFYSYELKYSSLNSTH-VLPAKIP-----LDIYKEVQR 229
             G   L   EI        K     Y  K+   +  +   P +        ++   ++ 
Sbjct: 199 SRGPEVLPPAEITFEGFQPGKPHIVGYRAKWVEDSHEYNHTPRRFDFEPRDAELLARLKA 258

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           ++    +  G RG +R DF  D   R  F LE+N  P +   + F   A  AG     ++
Sbjct: 259 MSLRCWRLFGLRGWARVDFRVDRKGR-PFILEVNANPCLADDAGFMAAARRAGLDQTIVV 317

Query: 290 LWMVEDASCLR 300
             ++  AS  R
Sbjct: 318 WRILGSASRGR 328


>gi|48525852|gb|AAT45136.1| D-alanine D-alanine ligase [Streptococcus mitis]
          Length = 147

 Score =  135 bits (340), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 42/146 (28%), Positives = 72/146 (49%), Gaps = 5/146 (3%)

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            + +  ++ P   KP   GSS+GI   +  + +   L    ++ +  ++L+EQ V+  E+
Sbjct: 4   AEVEEKLTYPVFTKPSNMGSSVGISKSENQEELRQAL--ELAFQYDSRVLVEQGVNAREI 61

Query: 178 TCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
             G++G+  +  T     V    FY Y+ KY     T  +PAKI  D+   ++R A  A 
Sbjct: 62  EVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKITMDIPAKISDDVVAIMRRNAETAF 121

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLE 261
           +AIG  G+SR DF +     ++F  E
Sbjct: 122 RAIGGLGLSRCDFFYTDK-GEIFLNE 146


>gi|3821360|emb|CAA13247.1| D-alanine D-alanine ligase [Streptococcus pneumoniae]
 gi|3821399|emb|CAA13266.1| D-alanine D-alanine ligase [Streptococcus pneumoniae]
 gi|148711523|gb|ABR02188.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711553|gb|ABR02203.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711609|gb|ABR02231.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711617|gb|ABR02235.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711625|gb|ABR02239.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711631|gb|ABR02242.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711685|gb|ABR02269.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711687|gb|ABR02270.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711781|gb|ABR02317.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711783|gb|ABR02318.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711785|gb|ABR02319.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711797|gb|ABR02325.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711801|gb|ABR02327.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711805|gb|ABR02329.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711811|gb|ABR02332.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711815|gb|ABR02334.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|156145998|gb|ABU53060.1| D-alanylalanine synthetase [Streptococcus mitis]
 gi|156146008|gb|ABU53065.1| D-alanylalanine synthetase [Streptococcus mitis]
 gi|156146010|gb|ABU53066.1| D-alanylalanine synthetase [Streptococcus mitis]
 gi|156146016|gb|ABU53069.1| D-alanylalanine synthetase [Streptococcus mitis]
 gi|156146028|gb|ABU53075.1| D-alanylalanine synthetase [Streptococcus mitis]
 gi|156146048|gb|ABU53085.1| D-alanylalanine synthetase [Streptococcus mitis]
 gi|156146050|gb|ABU53086.1| D-alanylalanine synthetase [Streptococcus mitis]
          Length = 147

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 41/146 (28%), Positives = 72/146 (49%), Gaps = 5/146 (3%)

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            + +  ++ P   KP   GSS+GI   +  + +   L    ++ +  ++L+EQ V+  E+
Sbjct: 4   AEVEEKLTYPVFTKPSNMGSSVGISKSENQEELRQALKL--AFQYDSRVLVEQGVNAREI 61

Query: 178 TCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
             G++G+  +  T     V    FY Y+ KY     T  +PAKI  D+   +++ A  A 
Sbjct: 62  EVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAF 121

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLE 261
           +AIG  G+SR DF +     ++F  E
Sbjct: 122 RAIGGLGLSRCDFFYTDK-GEIFLNE 146


>gi|156146842|gb|ABU53433.1| D-alanylalanine synthetase [Streptococcus oralis]
          Length = 147

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 41/146 (28%), Positives = 72/146 (49%), Gaps = 5/146 (3%)

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            + +  ++ P   KP   GSS+GI   +  + +   L    ++ +  ++L+EQ V+  E+
Sbjct: 4   AEVEEKLTFPVFTKPSNMGSSVGISKSENQEELRQAL--ELAFQYDSRVLVEQGVNAREI 61

Query: 178 TCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
             G++G+  +  T     V    FY Y+ KY     T  +PAKI  D+   +++ A  A 
Sbjct: 62  EVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAF 121

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLE 261
           +AIG  G+SR DF +     ++F  E
Sbjct: 122 RAIGGLGLSRCDFFYTDK-GEIFLNE 146


>gi|156146822|gb|ABU53423.1| D-alanylalanine synthetase [Streptococcus oralis]
          Length = 147

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 41/146 (28%), Positives = 72/146 (49%), Gaps = 5/146 (3%)

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            + +  ++ P   KP   GSS+GI   +  + +   L    ++ +  ++L+EQ V+  E+
Sbjct: 4   AEVEEKLTYPVFTKPSNMGSSVGISKSENHEELRQAL--ELAFQYDSRVLVEQGVNAREI 61

Query: 178 TCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
             G++G+  +  T     V    FY Y+ KY     T  +PAKI  D+   +++ A  A 
Sbjct: 62  EVGLLGNYEVKSTLPGEVVKDVAFYDYDAKYIDNKITMDIPAKISEDVVAIMRQNAETAF 121

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLE 261
           +AIG  G+SR DF +     ++F  E
Sbjct: 122 RAIGGLGLSRCDFFYTDK-GEIFLNE 146


>gi|3821379|emb|CAA13256.1| D-alanine D-alanine ligase [Streptococcus pneumoniae]
 gi|6634554|emb|CAB64456.1| D-alanine--D-alanine ligase [Streptococcus oralis]
 gi|6634615|emb|CAB64498.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae]
 gi|38520892|emb|CAE75669.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae]
 gi|40204832|emb|CAF02017.1| D-alanine:D-alanine ligase [Streptococcus mitis]
 gi|148711667|gb|ABR02260.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711743|gb|ABR02298.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711809|gb|ABR02331.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|156146012|gb|ABU53067.1| D-alanylalanine synthetase [Streptococcus mitis]
 gi|156146060|gb|ABU53091.1| D-alanylalanine synthetase [Streptococcus mitis]
          Length = 147

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 41/146 (28%), Positives = 72/146 (49%), Gaps = 5/146 (3%)

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            + +  ++ P   KP   GSS+GI   +  + +   L    ++ +  ++L+EQ V+  E+
Sbjct: 4   AEVEEKLTYPVFTKPSNMGSSVGISKSENQEELRQAL--ELAFRYDSRVLVEQGVNAREI 61

Query: 178 TCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
             G++G+  +  T     V    FY Y+ KY     T  +PAKI  D+   +++ A  A 
Sbjct: 62  EVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAF 121

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLE 261
           +AIG  G+SR DF +     ++F  E
Sbjct: 122 RAIGGLGLSRCDFFYTDK-GEIFLNE 146


>gi|148711693|gb|ABR02273.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711727|gb|ABR02290.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711729|gb|ABR02291.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711749|gb|ABR02301.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711775|gb|ABR02314.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711779|gb|ABR02316.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711787|gb|ABR02320.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711791|gb|ABR02322.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
          Length = 147

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 42/146 (28%), Positives = 72/146 (49%), Gaps = 5/146 (3%)

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            + +  ++ P   KP   GSS+GI   +  + +   L    ++ +  ++L+EQ V+  E+
Sbjct: 4   AEVEEKLTYPVFTKPSNMGSSVGISKSENQEELRQALKL--AFQYDSRVLVEQGVNAREI 61

Query: 178 TCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
             G++G+  +  T     V    FY Y+ KY     T  +PAKI  D+   +++ A  A 
Sbjct: 62  EVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAF 121

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLE 261
           +AIG  G+SR DF +     +VF  E
Sbjct: 122 RAIGGLGLSRCDFFYTDK-GEVFLNE 146


>gi|48525846|gb|AAT45133.1| D-alanine D-alanine ligase [Streptococcus mitis]
 gi|48525850|gb|AAT45135.1| D-alanine D-alanine ligase [Streptococcus mitis]
 gi|48525856|gb|AAT45138.1| D-alanine D-alanine ligase [Streptococcus mitis]
 gi|156146804|gb|ABU53414.1| D-alanylalanine synthetase [Streptococcus oralis]
 gi|156146818|gb|ABU53421.1| D-alanylalanine synthetase [Streptococcus oralis]
 gi|156146882|gb|ABU53453.1| D-alanylalanine synthetase [Streptococcus oralis]
 gi|156146886|gb|ABU53455.1| D-alanylalanine synthetase [Streptococcus oralis]
 gi|156146896|gb|ABU53460.1| D-alanylalanine synthetase [Streptococcus oralis]
 gi|156146900|gb|ABU53462.1| D-alanylalanine synthetase [Streptococcus oralis]
          Length = 147

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 41/146 (28%), Positives = 72/146 (49%), Gaps = 5/146 (3%)

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            + +  ++ P   KP   GSS+GI   +  + +   L    ++ +  ++L+EQ V+  E+
Sbjct: 4   AEVEEKLTYPVFTKPSNMGSSVGISKSENQEELRQAL--ELAFQYDSRVLVEQGVNAREI 61

Query: 178 TCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
             G++G+  +  T     V    FY Y+ KY     T  +PAKI  D+   +++ A  A 
Sbjct: 62  EVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAF 121

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLE 261
           +AIG  G+SR DF +     ++F  E
Sbjct: 122 RAIGGLGLSRCDFFYTDK-GEIFLNE 146


>gi|156145996|gb|ABU53059.1| D-alanylalanine synthetase [Streptococcus mitis]
          Length = 147

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 42/146 (28%), Positives = 72/146 (49%), Gaps = 5/146 (3%)

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            + +  ++ P   KP   GSS+GI   +  + +   L    ++ +  ++L+EQ V+  E+
Sbjct: 4   AEVEEKLTYPVFTKPSNMGSSVGISKSENQEELRQAL--ELAFRYDSRVLVEQGVNAREI 61

Query: 178 TCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
             G++G+  +  T     V    FY Y+ KY     T  +PAKI  D+   +++ A  A 
Sbjct: 62  EVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAF 121

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLE 261
           +AIG  G+SR DF +     +VF  E
Sbjct: 122 RAIGGLGLSRCDFFYTDK-GEVFLNE 146


>gi|156146056|gb|ABU53089.1| D-alanylalanine synthetase [Streptococcus mitis]
          Length = 147

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 43/146 (29%), Positives = 72/146 (49%), Gaps = 5/146 (3%)

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            + +  ++ P   KP   GSS+GI   +  + +   L    ++ +  ++L+EQ V+  E+
Sbjct: 4   AEVEEKLTYPVFTKPSNMGSSVGISKSENQEELRQAL--ELAFQYDSRVLVEQGVNAREI 61

Query: 178 TCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
             G++G+  +  T     V    FY Y+ KY     T  +PAKI  D+   ++R A  A 
Sbjct: 62  EVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKITMDIPAKISDDVIAVMRRNAETAF 121

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLE 261
           +AIG  G+SR DF +     +VF  E
Sbjct: 122 RAIGGLGLSRCDFFYTDK-GEVFLNE 146


>gi|148711703|gb|ABR02278.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|156146032|gb|ABU53077.1| D-alanylalanine synthetase [Streptococcus mitis]
          Length = 147

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 42/146 (28%), Positives = 72/146 (49%), Gaps = 5/146 (3%)

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            + +  ++ P   KP   GSS+GI   +  + +   L    ++ +  ++L+EQ V+  E+
Sbjct: 4   AEVEEKLTYPVFTKPSNMGSSVGISKSENQEELRQAL--ELAFQYDSRVLVEQGVNAREI 61

Query: 178 TCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
             G++G+  +  T     V    FY Y+ KY     T  +PAKI  D+   +++ A  A 
Sbjct: 62  EVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAF 121

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLE 261
           +AIG  G+SR DF +     +VF  E
Sbjct: 122 RAIGGLGLSRCDFFYTDK-GEVFLNE 146


>gi|148711555|gb|ABR02204.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
          Length = 147

 Score =  134 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 42/146 (28%), Positives = 72/146 (49%), Gaps = 5/146 (3%)

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            + +  ++ P   KP   GSS+GI   +  + +   L    ++ +  ++L+EQ V+  E+
Sbjct: 4   AEVEEKLTYPVFTKPSNMGSSVGISKSENQEELRQAL--ELAFRYDSRVLVEQGVNAREI 61

Query: 178 TCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
             G++G+  +  T     V    FY Y+ KY     T  +PAKI  D+   +++ A  A 
Sbjct: 62  EVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKITMDVPAKISDDVIAVMRQNAETAF 121

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLE 261
           +AIG  G+SR DF +     +VF  E
Sbjct: 122 RAIGGLGLSRCDFFYTDK-GEVFLNE 146


>gi|156146866|gb|ABU53445.1| D-alanylalanine synthetase [Streptococcus oralis]
          Length = 147

 Score =  134 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 42/145 (28%), Positives = 71/145 (48%), Gaps = 5/145 (3%)

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           + +  ++ P   KP   GSS+GI   +    +   L    ++ +  ++L+EQ V+  E+ 
Sbjct: 5   EVEEKLTYPVFTKPSNMGSSVGISKSENQDELRQAL--ELAFQYDSRVLVEQGVNAREIE 62

Query: 179 CGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
            G++G+  +  T     V    FY Y+ KY     T  +PAKI  D+   ++R A  A +
Sbjct: 63  VGLLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRRNAETAFR 122

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLE 261
           AIG  G+SR DF +     ++F  E
Sbjct: 123 AIGGLGLSRCDFFYTDK-GEIFLNE 146


>gi|6434093|emb|CAB60643.1| D-ala,D-ala ligase [Streptococcus pneumoniae]
 gi|6634603|emb|CAB64492.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae]
 gi|48525842|gb|AAT45131.1| D-alanine D-alanine ligase [Streptococcus mitis]
 gi|148711701|gb|ABR02277.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711745|gb|ABR02299.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711747|gb|ABR02300.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711751|gb|ABR02302.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
          Length = 147

 Score =  134 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 42/146 (28%), Positives = 72/146 (49%), Gaps = 5/146 (3%)

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            + +  ++ P   KP   GSS+GI   +  + +   L    ++ +  ++L+EQ V+  E+
Sbjct: 4   AEVEEKLTYPVFTKPSNMGSSVGISKSENQEELRQAL--ELAFQYDSRVLVEQGVNAREI 61

Query: 178 TCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
             G++G+  +  T     V    FY Y+ KY     T  +PAKI  D+   ++R A  A 
Sbjct: 62  EVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRRNAETAF 121

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLE 261
           +AIG  G+SR DF +     ++F  E
Sbjct: 122 RAIGGLGLSRCDFFYTDK-GEIFLNE 146


>gi|156146832|gb|ABU53428.1| D-alanylalanine synthetase [Streptococcus oralis]
 gi|156146834|gb|ABU53429.1| D-alanylalanine synthetase [Streptococcus oralis]
 gi|156146836|gb|ABU53430.1| D-alanylalanine synthetase [Streptococcus oralis]
          Length = 147

 Score =  134 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 41/146 (28%), Positives = 71/146 (48%), Gaps = 5/146 (3%)

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            + +  ++ P   KP   GSS+GI   +  + +   L    ++ +  ++L+EQ V+  E+
Sbjct: 4   AEVEEKLTYPVFTKPSNMGSSVGISKSENQEELRQAL--ELAFQYDSRVLVEQGVNAREI 61

Query: 178 TCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
             G++G+  +  T     V    FY Y+ KY     T  +PAKI  D+   ++  A  A 
Sbjct: 62  EVGLLGNYEVKSTLPGEVVKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRHNAETAF 121

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLE 261
           +AIG  G+SR DF +     ++F  E
Sbjct: 122 RAIGGLGLSRCDFFYTDK-GEIFLNE 146


>gi|156146810|gb|ABU53417.1| D-alanylalanine synthetase [Streptococcus oralis]
 gi|156146814|gb|ABU53419.1| D-alanylalanine synthetase [Streptococcus oralis]
          Length = 147

 Score =  134 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 42/146 (28%), Positives = 72/146 (49%), Gaps = 5/146 (3%)

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            + +  ++ P   KP   GSS+GI   +  + +   L    ++ +  ++L+EQ V+  E+
Sbjct: 4   AEVEKKLTYPVFTKPSNMGSSVGISKSENQEELRQAL--ELAFQYDSRVLVEQGVNAREI 61

Query: 178 TCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
             G++G+  +  T     V    FY Y+ KY     T  +PAKI  D+   ++R A  A 
Sbjct: 62  EVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRRNAETAF 121

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLE 261
           +AIG  G+SR DF +     ++F  E
Sbjct: 122 RAIGGLGLSRCDFFYTDK-GEIFLNE 146


>gi|283781145|ref|YP_003371900.1| GCN5-like N-acetyltransferase [Pirellula staleyi DSM 6068]
 gi|283439598|gb|ADB18040.1| GCN5-related N-acetyltransferase [Pirellula staleyi DSM 6068]
          Length = 508

 Score =  134 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 70/309 (22%), Positives = 133/309 (43%), Gaps = 29/309 (9%)

Query: 10  SEREVSLSSGKACASALEDAGFKVSQIDVDRS---VGLVLAHLKPDLAFNVLHGNFGEDG 66
           S+R+V L        A   AG+ V   +       V  +L   + D+ FN++    G D 
Sbjct: 19  SDRDV-LEQVAVVEQACRAAGWPVEVCETSLDFTRVDQLLTSGRFDVVFNLVESLAGSDQ 77

Query: 67  LVQ---AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
           L +    ++E   +P T S   A  LS DK+ +KQ++    +P      ++    ++   
Sbjct: 78  LAELFVRLVEARGVPITGSSARALQLSNDKIATKQLLREKQLPTAAWCTLD-DAGNASAE 136

Query: 124 ISPPYVIKPLKGGSSLGI---IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           + PP+++K +   +SLG+    V+    +     +++ +   G     EQ++DG E    
Sbjct: 137 LRPPWIVKAIGQHASLGLDDSCVVLGPAADVAAAIRAQAARLGTPCFAEQFIDGREFNVS 196

Query: 181 VM----GDASLDVTEI-----AVPKSDFYSYELKYSSLNSTHV-------LPAKIPLDIY 224
           ++    G   L + EI        K     Y+ K+S+ ++           PA     + 
Sbjct: 197 LLATEQGVEVLPIAEILFVDFPAGKPRIVGYDAKWSADSAEFTGTPRTFDFPAS-DGPLL 255

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
             +++L+  A +++   G +R DF  D  + +   LE+N  P ++P + F   AA +G S
Sbjct: 256 ALLEKLSREAWKSLQLSGYARIDFRVDQQA-QPLLLEVNTNPCLSPDAGFAAAAAQSGRS 314

Query: 285 FRELLLWMV 293
             E +  +V
Sbjct: 315 LEEAIQQIV 323


>gi|148711761|gb|ABR02307.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711823|gb|ABR02338.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
          Length = 147

 Score =  134 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 41/146 (28%), Positives = 73/146 (50%), Gaps = 5/146 (3%)

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            + +  ++ P   KP   GSS+GI   +  + +   L    ++ +  ++L+EQ V+  E+
Sbjct: 4   AEVEEKLTYPVFTKPSNMGSSVGISKSENQEELRQALKL--AFQYDSRVLVEQGVNAREI 61

Query: 178 TCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
             G++G+ ++  T     V    FY Y+ KY     T  +PAKI  D+   +++ A  A 
Sbjct: 62  EVGLLGNYNVKSTLPGEVVKDVAFYDYDAKYIDNKITMDIPAKINDDVVAVMRQNAETAF 121

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLE 261
           +AIG  G+SR DF +     ++F  E
Sbjct: 122 RAIGGLGLSRCDFFYTDK-GEIFLNE 146


>gi|148711707|gb|ABR02280.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711753|gb|ABR02303.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
          Length = 147

 Score =  134 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 42/146 (28%), Positives = 73/146 (50%), Gaps = 5/146 (3%)

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            + +  ++ P   KP   GSS+GI   +  + +   L    ++ +  ++L+EQ V+  E+
Sbjct: 4   AEVEEKLAYPVFTKPSNMGSSVGISKPENQEELRQALKL--AFRYDSRVLVEQGVNAREI 61

Query: 178 TCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
             G++G+  +  T     V    FY Y+ KY   N T  +PAKI  D+   +++ A  A 
Sbjct: 62  EVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNNITMDIPAKISDDVVAVMRQNAETAF 121

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLE 261
           +AIG  G+SR DF +     ++F  E
Sbjct: 122 RAIGGLGLSRCDFFYTDK-GEIFLNE 146


>gi|2766019|emb|CAB16971.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae]
 gi|2766021|emb|CAB16972.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae]
 gi|2766023|emb|CAB16973.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae]
 gi|2766025|emb|CAB16974.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae]
 gi|2766027|emb|CAB16975.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae]
 gi|2766029|emb|CAB16976.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae]
 gi|2766031|emb|CAB16977.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae]
 gi|2766033|emb|CAB16978.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae]
 gi|2766035|emb|CAB16979.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae]
 gi|2766037|emb|CAB16980.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae]
 gi|2766039|emb|CAB16981.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae]
 gi|2766043|emb|CAB16983.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae]
 gi|2766045|emb|CAB16984.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae]
 gi|2766047|emb|CAB16985.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae]
 gi|2766049|emb|CAB16986.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae]
 gi|2766051|emb|CAB16987.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae]
 gi|2766053|emb|CAB16988.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae]
 gi|2766085|emb|CAB17004.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae]
 gi|2766089|emb|CAB17006.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae]
 gi|2766091|emb|CAB17007.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae]
 gi|2766093|emb|CAB17008.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae]
 gi|2766095|emb|CAB17009.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae]
 gi|2766097|emb|CAB17010.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae]
 gi|2766099|emb|CAB17011.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae]
 gi|2766101|emb|CAB17012.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae]
 gi|2766103|emb|CAB17013.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae]
 gi|2766105|emb|CAB17014.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae]
 gi|2766107|emb|CAB17015.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae]
 gi|2766111|emb|CAB17017.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae]
 gi|2766117|emb|CAB17020.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae]
 gi|2766121|emb|CAB17022.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae]
 gi|2766123|emb|CAB17023.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae]
 gi|2766125|emb|CAB17024.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae]
 gi|3821356|emb|CAA13244.1| D-alanine D-alanine ligase [Streptococcus pneumoniae]
 gi|3821366|emb|CAA13250.1| D-alanine D-alanine ligase [Streptococcus pneumoniae]
 gi|3821383|emb|CAA13258.1| D-alanine D-alanine ligase [Streptococcus pneumoniae]
 gi|3821411|emb|CAA13272.1| D-alanine D-alanine ligase [Streptococcus pneumoniae]
 gi|3821413|emb|CAA13273.1| D-alanine D-alanine ligase [Streptococcus pneumoniae]
 gi|148711409|gb|ABR02131.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711433|gb|ABR02143.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711453|gb|ABR02153.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711473|gb|ABR02163.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711499|gb|ABR02176.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711505|gb|ABR02179.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711509|gb|ABR02181.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711517|gb|ABR02185.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711519|gb|ABR02186.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711521|gb|ABR02187.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711525|gb|ABR02189.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711527|gb|ABR02190.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711549|gb|ABR02201.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711559|gb|ABR02206.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711561|gb|ABR02207.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711563|gb|ABR02208.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711565|gb|ABR02209.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711567|gb|ABR02210.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711569|gb|ABR02211.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711571|gb|ABR02212.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711573|gb|ABR02213.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711575|gb|ABR02214.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711577|gb|ABR02215.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711589|gb|ABR02221.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711593|gb|ABR02223.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711595|gb|ABR02224.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711597|gb|ABR02225.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711601|gb|ABR02227.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711607|gb|ABR02230.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711611|gb|ABR02232.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711619|gb|ABR02236.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711627|gb|ABR02240.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711629|gb|ABR02241.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711633|gb|ABR02243.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711635|gb|ABR02244.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711637|gb|ABR02245.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711639|gb|ABR02246.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711645|gb|ABR02249.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711653|gb|ABR02253.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711655|gb|ABR02254.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711657|gb|ABR02255.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711673|gb|ABR02263.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711675|gb|ABR02264.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711681|gb|ABR02267.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711683|gb|ABR02268.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711691|gb|ABR02272.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711695|gb|ABR02274.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711697|gb|ABR02275.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711699|gb|ABR02276.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711705|gb|ABR02279.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711709|gb|ABR02281.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711711|gb|ABR02282.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711713|gb|ABR02283.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711715|gb|ABR02284.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711725|gb|ABR02289.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711731|gb|ABR02292.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711733|gb|ABR02293.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711735|gb|ABR02294.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711737|gb|ABR02295.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711739|gb|ABR02296.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711755|gb|ABR02304.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711763|gb|ABR02308.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711769|gb|ABR02311.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711789|gb|ABR02321.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711793|gb|ABR02323.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711799|gb|ABR02326.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711803|gb|ABR02328.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711821|gb|ABR02337.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711825|gb|ABR02339.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711827|gb|ABR02340.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711829|gb|ABR02341.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711831|gb|ABR02342.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711833|gb|ABR02343.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|156146828|gb|ABU53426.1| D-alanylalanine synthetase [Streptococcus oralis]
          Length = 147

 Score =  134 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 41/146 (28%), Positives = 72/146 (49%), Gaps = 5/146 (3%)

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            + +  ++ P   KP   GSS+GI   +  + +   L    ++ +  ++L+EQ V+  E+
Sbjct: 4   AEVEEKLAYPVFTKPSNMGSSVGISKSENQEELRQALKL--AFRYDSRVLVEQGVNAREI 61

Query: 178 TCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
             G++G+  +  T     V    FY Y+ KY     T  +PAKI  D+   +++ A  A 
Sbjct: 62  EVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKVTMDIPAKISDDVVAVMRQNAETAF 121

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLE 261
           +AIG  G+SR DF +     ++F  E
Sbjct: 122 RAIGGLGLSRCDFFYTDK-GEIFLNE 146


>gi|3821391|emb|CAA13262.1| D-alanine D-alanine ligase [Streptococcus pneumoniae]
 gi|148711429|gb|ABR02141.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711441|gb|ABR02147.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711445|gb|ABR02149.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
          Length = 147

 Score =  134 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 41/146 (28%), Positives = 72/146 (49%), Gaps = 5/146 (3%)

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            + +  ++ P   KP   GSS+GI   +  + +   L    ++ +  ++L+EQ V+  E+
Sbjct: 4   AEVEEKLAYPVFTKPSNMGSSVGISKSENQEELRQAL--ELAFRYDSRVLVEQGVNAREI 61

Query: 178 TCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
             G++G+  +  T     V    FY Y+ KY     T  +PAKI  D+   +++ A  A 
Sbjct: 62  EVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKVTMDIPAKISDDVVAVMRQNAETAF 121

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLE 261
           +AIG  G+SR DF +     ++F  E
Sbjct: 122 RAIGGLGLSRCDFFYTDK-GEIFLNE 146


>gi|3821405|emb|CAA13269.1| D-alanine D-alanine ligase [Streptococcus pneumoniae]
          Length = 147

 Score =  134 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 41/146 (28%), Positives = 72/146 (49%), Gaps = 5/146 (3%)

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            + +  ++ P   KP   GSS+GI   +  + +   L    ++ +  ++L+EQ V+  E+
Sbjct: 4   AEVEEKLAYPVFTKPSNMGSSVGISKSENQEELRPAL--ELAFRYDSRVLVEQGVNAREI 61

Query: 178 TCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
             G++G+  +  T     V    FY Y+ KY     T  +PAKI  D+   +++ A  A 
Sbjct: 62  EVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAF 121

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLE 261
           +AIG  G+SR DF +     ++F  E
Sbjct: 122 RAIGGLGLSRCDFFYTDK-GEIFLNE 146


>gi|156146030|gb|ABU53076.1| D-alanylalanine synthetase [Streptococcus mitis]
          Length = 147

 Score =  134 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 41/146 (28%), Positives = 72/146 (49%), Gaps = 5/146 (3%)

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            + +  ++ P   KP   GSS+GI   +  + +   L    ++ +  ++L+EQ V+  E+
Sbjct: 4   AEVEEKLAYPVFTKPSNMGSSVGISKSENQEELRQALKL--AFQYDSRVLVEQGVNAREI 61

Query: 178 TCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
             G++G+  +  T     V    FY Y+ KY     T  +PAKI  D+   +++ A  A 
Sbjct: 62  EVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKITMDIPAKISDDVIAVMRQNAETAF 121

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLE 261
           +AIG  G+SR DF +     ++F  E
Sbjct: 122 RAIGGLGLSRCDFFYTDK-GEIFLNE 146


>gi|298378694|ref|ZP_06988578.1| D-alanine-D-alanine ligase [Escherichia coli FVEC1302]
 gi|298281028|gb|EFI22529.1| D-alanine-D-alanine ligase [Escherichia coli FVEC1302]
          Length = 96

 Score =  134 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 42/91 (46%), Positives = 56/91 (61%)

Query: 1  MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
          +AVL+GG S+EREVSL+SG A  + L + G     +D        L  +     F  LHG
Sbjct: 5  IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64

Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSM 91
            GEDG +Q +LEL+ +PYT SG++ASALSM
Sbjct: 65 RGGEDGTLQGMLELMGLPYTGSGVMASALSM 95


>gi|156146820|gb|ABU53422.1| D-alanylalanine synthetase [Streptococcus oralis]
          Length = 147

 Score =  134 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 41/146 (28%), Positives = 71/146 (48%), Gaps = 5/146 (3%)

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            + +  ++ P   KP   GSS+GI   +  + +   L    ++ +  ++L+EQ V+  E+
Sbjct: 4   AEVEEKLTYPVFTKPSNMGSSVGISKSENQEELRQAL--ELAFQYDSRVLVEQGVNAREI 61

Query: 178 TCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
             G++G+  +  T     V    FY Y+ KY     T  +PAKI  D+   ++  A  A 
Sbjct: 62  EVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRHNAETAF 121

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLE 261
           +AIG  G+SR DF +     ++F  E
Sbjct: 122 RAIGGLGLSRCDFFYTDK-GEIFLNE 146


>gi|156146026|gb|ABU53074.1| D-alanylalanine synthetase [Streptococcus mitis]
          Length = 147

 Score =  134 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 41/146 (28%), Positives = 72/146 (49%), Gaps = 5/146 (3%)

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            + +  ++ P   KP   GSS+GI   +  + +   L    ++ +  ++L+EQ V+  E+
Sbjct: 4   AEVEEKLTYPVFTKPSNMGSSVGISKSENQEELRQAL--ELAFQYDSRVLVEQGVNAREI 61

Query: 178 TCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
             G++G+  +  T     V    FY Y+ KY     T  +PAKI  D+   +++ A  A 
Sbjct: 62  EVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKITMDIPAKISNDVIAVMRQNAETAF 121

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLE 261
           +AIG  G+SR DF +     ++F  E
Sbjct: 122 RAIGGLGLSRCDFFYTDK-GEIFLNE 146


>gi|3821358|emb|CAA13246.1| D-alanine D-alanine ligase [Streptococcus pneumoniae]
          Length = 147

 Score =  134 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 41/146 (28%), Positives = 72/146 (49%), Gaps = 5/146 (3%)

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            + +  ++ P   KP   GSS+GI   +  + +   L    ++ +  ++L+EQ V+  E+
Sbjct: 4   AEVEEKLAYPVFTKPSNMGSSVGISKSENQEELRQALKL--AFQYDSRVLVEQGVNAREI 61

Query: 178 TCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
             G++G+  +  T     V    FY Y+ KY     T  +PAKI  D+   +++ A  A 
Sbjct: 62  EVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAF 121

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLE 261
           +AIG  G+SR DF +     ++F  E
Sbjct: 122 RAIGGLGLSRCDFFYTDK-GEIFLNE 146


>gi|156146812|gb|ABU53418.1| D-alanylalanine synthetase [Streptococcus oralis]
          Length = 147

 Score =  134 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 42/146 (28%), Positives = 72/146 (49%), Gaps = 5/146 (3%)

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            + +  ++ P   KP   GSS+GI   +  + +   L    ++ +  ++L+EQ V+  E+
Sbjct: 4   AEVEEKLTYPVFTKPSNMGSSVGISKSENHEELRQAL--ELAFQYDSRVLVEQGVNAREI 61

Query: 178 TCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
             G++G+  +  T     V    FY Y+ KY     T  +PAKI  D+   ++R A  A 
Sbjct: 62  EVGLLGNYDVKSTFPGEVVKDVAFYDYDAKYIDNKITMDIPAKISEDVVAVMRRNAETAF 121

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLE 261
           +AIG  G+SR DF +     ++F  E
Sbjct: 122 RAIGGLGLSRCDFFYTDK-GEIFLNE 146


>gi|156146024|gb|ABU53073.1| D-alanylalanine synthetase [Streptococcus mitis]
          Length = 147

 Score =  134 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 42/146 (28%), Positives = 73/146 (50%), Gaps = 5/146 (3%)

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
           ++ +  ++ P   KP   GSS+GI   +  + +   L    ++ +  ++L+EQ V+  E+
Sbjct: 4   VEVEEKLTYPVFTKPSNMGSSVGISKSENQEELRQAL--ELAFQYDSRVLVEQGVNAREI 61

Query: 178 TCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
             G++G+  +  T     V    FY Y+ KY     T  +PAKI  D+   +++ A  A 
Sbjct: 62  EVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKITMDIPAKISDDVVSVMRQNAETAF 121

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLE 261
           +AIG  G+SR DF +     +VF  E
Sbjct: 122 RAIGGLGLSRCDFFYTDK-GEVFLNE 146


>gi|2766009|emb|CAB16966.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae]
 gi|2766013|emb|CAB16968.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae]
 gi|2766119|emb|CAB17021.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae]
 gi|2766127|emb|CAB17025.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae]
 gi|3821368|emb|CAA13251.1| D-alanine D-alanine ligase [Streptococcus pneumoniae]
 gi|3821375|emb|CAA13254.1| D-alanine D-alanine ligase [Streptococcus pneumoniae]
 gi|3821387|emb|CAA13260.1| D-alanine D-alanine ligase [Streptococcus pneumoniae]
 gi|3821415|emb|CAA13274.1| D-alanine D-alanine ligase [Streptococcus pneumoniae]
 gi|148711425|gb|ABR02139.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711427|gb|ABR02140.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711467|gb|ABR02160.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711469|gb|ABR02161.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711495|gb|ABR02174.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711649|gb|ABR02251.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711659|gb|ABR02256.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711661|gb|ABR02257.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711663|gb|ABR02258.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711665|gb|ABR02259.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711671|gb|ABR02262.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711677|gb|ABR02265.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
          Length = 147

 Score =  134 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 41/146 (28%), Positives = 72/146 (49%), Gaps = 5/146 (3%)

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            + +  ++ P   KP   GSS+GI   +  + +   L    ++ +  ++L+EQ V+  E+
Sbjct: 4   AEVEEKLAYPVFTKPSNMGSSVGISKSENQEELRQAL--ELAFRYDSRVLVEQGVNAREI 61

Query: 178 TCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
             G++G+  +  T     V    FY Y+ KY     T  +PAKI  D+   +++ A  A 
Sbjct: 62  EVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAF 121

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLE 261
           +AIG  G+SR DF +     ++F  E
Sbjct: 122 RAIGGLGLSRCDFFYTDK-GEIFLNE 146


>gi|2766001|emb|CAB16962.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae]
 gi|2766015|emb|CAB16969.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae]
 gi|2766017|emb|CAB16970.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae]
 gi|2766083|emb|CAB17003.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae]
 gi|2766113|emb|CAB17018.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae]
 gi|2766115|emb|CAB17019.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae]
 gi|3821362|emb|CAA13248.1| D-alanine D-alanine ligase [Streptococcus pneumoniae]
 gi|3821381|emb|CAA13257.1| D-alanine D-alanine ligase [Streptococcus pneumoniae]
 gi|3821393|emb|CAA13263.1| D-alanine D-alanine ligase [Streptococcus pneumoniae]
 gi|3821407|emb|CAA13270.1| D-alanine D-alanine ligase [Streptococcus pneumoniae]
 gi|3821409|emb|CAA13271.1| D-alanine D-alanine ligase [Streptococcus pneumoniae]
 gi|3821417|emb|CAA13275.1| D-alanine D-alanine ligase [Streptococcus pneumoniae]
 gi|148711411|gb|ABR02132.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711413|gb|ABR02133.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711415|gb|ABR02134.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711417|gb|ABR02135.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711435|gb|ABR02144.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711437|gb|ABR02145.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711439|gb|ABR02146.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711451|gb|ABR02152.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711455|gb|ABR02154.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711457|gb|ABR02155.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711459|gb|ABR02156.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711461|gb|ABR02157.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711471|gb|ABR02162.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711481|gb|ABR02167.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711483|gb|ABR02168.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711485|gb|ABR02169.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711487|gb|ABR02170.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711489|gb|ABR02171.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711491|gb|ABR02172.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711493|gb|ABR02173.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711501|gb|ABR02177.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711531|gb|ABR02192.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711551|gb|ABR02202.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711615|gb|ABR02234.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711689|gb|ABR02271.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711717|gb|ABR02285.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711835|gb|ABR02344.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711837|gb|ABR02345.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|331687687|gb|AED88246.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
          Length = 147

 Score =  134 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 41/146 (28%), Positives = 72/146 (49%), Gaps = 5/146 (3%)

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            + +  ++ P   KP   GSS+GI   +  + +   L    ++ +  ++L+EQ V+  E+
Sbjct: 4   AEVEEKLAYPVFTKPSNMGSSVGISKSENQEELRQALKL--AFRYDSRVLVEQGVNAREI 61

Query: 178 TCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
             G++G+  +  T     V    FY Y+ KY     T  +PAKI  D+   +++ A  A 
Sbjct: 62  EVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAF 121

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLE 261
           +AIG  G+SR DF +     ++F  E
Sbjct: 122 RAIGGLGLSRCDFFYTDK-GEIFLNE 146


>gi|48525840|gb|AAT45130.1| D-alanine D-alanine ligase [Streptococcus mitis]
          Length = 147

 Score =  134 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 41/146 (28%), Positives = 73/146 (50%), Gaps = 5/146 (3%)

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
           ++ +  ++ P   KP   GSS+GI   +  + +   L    ++ +  ++L+EQ V+  E+
Sbjct: 4   VEVEEKLAYPVFTKPSNMGSSVGISKSENQEELRQAL--ELAFRYDSRVLVEQGVNAREI 61

Query: 178 TCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
             G++G+  +  T     V    FY Y+ KY     T  +PAKI  D+   +++ A  A 
Sbjct: 62  EVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAF 121

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLE 261
           +AIG  G+SR DF +     ++F  E
Sbjct: 122 RAIGGLGLSRCDFFYTDK-GEIFLNE 146


>gi|3821419|emb|CAA13276.1| D-alanine D-alanine ligase [Streptococcus pneumoniae]
          Length = 147

 Score =  134 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 41/146 (28%), Positives = 72/146 (49%), Gaps = 5/146 (3%)

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            + +  ++ P   KP   GSS+GI   +  + +   L    ++ +  ++L+EQ V+  E+
Sbjct: 4   AEVEEKLAYPVFTKPSNMGSSVGISKSENQEELRQALKL--AFRYDSRVLVEQGVNAREI 61

Query: 178 TCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
             G++G+  +  T     V    FY Y+ KY     T  +PAKI  D+   +++ A  A 
Sbjct: 62  EVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKVTMDIPAKISDDVVAVMRQNAEAAF 121

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLE 261
           +AIG  G+SR DF +     ++F  E
Sbjct: 122 RAIGGLGLSRCDFFYTDK-GEIFLNE 146


>gi|3947750|emb|CAA13580.1| D-alanine D-alanine ligase [Streptococcus pneumoniae]
          Length = 146

 Score =  134 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 41/146 (28%), Positives = 72/146 (49%), Gaps = 5/146 (3%)

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            + +  ++ P   KP   GSS+GI   +  + +   L    ++ +  ++L+EQ V+  E+
Sbjct: 4   AEVEEKLAYPVFTKPSNMGSSVGISKSENQEELRQALKL--AFRYDSRVLVEQGVNAREI 61

Query: 178 TCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
             G++G+  +  T     V    FY Y+ KY     T  +PAKI  D+   +++ A  A 
Sbjct: 62  EVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAF 121

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLE 261
           +AIG  G+SR DF +     ++F  E
Sbjct: 122 RAIGGLGLSRCDFFYTDK-GEIFLNE 146


>gi|3947752|emb|CAA13581.1| D-alanine D-alanine ligase [Streptococcus pneumoniae]
          Length = 146

 Score =  134 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 41/146 (28%), Positives = 72/146 (49%), Gaps = 5/146 (3%)

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            + +  ++ P   KP   GSS+GI   +  + +   L    ++ +  ++L+EQ V+  E+
Sbjct: 4   AEVEEKLAYPVFTKPSNMGSSVGISKSENQEELRQAL--ELAFRYDSRVLVEQGVNAREI 61

Query: 178 TCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
             G++G+  +  T     V    FY Y+ KY     T  +PAKI  D+   +++ A  A 
Sbjct: 62  EVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAF 121

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLE 261
           +AIG  G+SR DF +     ++F  E
Sbjct: 122 RAIGGLGLSRCDFFYTDK-GEIFLNE 146


>gi|148711511|gb|ABR02182.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711513|gb|ABR02183.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711515|gb|ABR02184.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711529|gb|ABR02191.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711533|gb|ABR02193.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711535|gb|ABR02194.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711537|gb|ABR02195.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711539|gb|ABR02196.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711541|gb|ABR02197.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711543|gb|ABR02198.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711545|gb|ABR02199.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711547|gb|ABR02200.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711557|gb|ABR02205.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711579|gb|ABR02216.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711581|gb|ABR02217.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711583|gb|ABR02218.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711585|gb|ABR02219.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
          Length = 147

 Score =  134 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 41/146 (28%), Positives = 72/146 (49%), Gaps = 5/146 (3%)

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            + +  ++ P   KP   GSS+GI   +  + +   L    ++ +  ++L+EQ V+  E+
Sbjct: 4   AEVEEKLTYPVFTKPSNMGSSVGISKSENQEELRQALKL--AFQYDSRILVEQGVNAREI 61

Query: 178 TCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
             G++G+  +  T     V    FY Y+ KY     T  +PAKI  D+   +++ A  A 
Sbjct: 62  EVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAF 121

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLE 261
           +AIG  G+SR DF +     ++F  E
Sbjct: 122 RAIGGLGLSRCDFFYTDK-GEIFLNE 146


>gi|156146872|gb|ABU53448.1| D-alanylalanine synthetase [Streptococcus oralis]
          Length = 147

 Score =  134 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 42/146 (28%), Positives = 72/146 (49%), Gaps = 5/146 (3%)

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            + +  ++ P   KP   GSS+GI   +  + +   L    ++ +  ++L+EQ V+  E+
Sbjct: 4   AEVEEKLTYPVFTKPSNMGSSVGISKSENHEELRQAL--ELAFQYDSRVLVEQGVNAREI 61

Query: 178 TCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
             G++G+  +  T     V    FY Y+ KY     T  +PAKI  D+   ++R A  A 
Sbjct: 62  EVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKITMDIPAKISDDVVAIMRRNAETAF 121

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLE 261
           +AIG  G+SR DF +     ++F  E
Sbjct: 122 RAIGGLGLSRCDFFYTDK-GEIFLNE 146


>gi|156146006|gb|ABU53064.1| D-alanylalanine synthetase [Streptococcus mitis]
          Length = 147

 Score =  134 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 42/146 (28%), Positives = 73/146 (50%), Gaps = 5/146 (3%)

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            + +  ++ P   KP   GSS+GI   +  + +   L    ++ +  ++L+EQ V+  E+
Sbjct: 4   AEVEEKLTYPVFTKPSNMGSSVGISKSENQEELRQALKL--AFQYDSRILVEQGVNAREI 61

Query: 178 TCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
             G++G+ ++  T     V    FY Y+ KY     T  +PAKI  D+   +++ A  A 
Sbjct: 62  EVGLLGNYNVKSTLPGEVVKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAF 121

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLE 261
           +AIG  G+SR DF +     +VF  E
Sbjct: 122 RAIGGLGLSRCDFFYTDK-GEVFLNE 146


>gi|6434097|emb|CAB60645.1| D-ala,D-ala ligase [Streptococcus pneumoniae]
 gi|6634619|emb|CAB64500.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae]
          Length = 147

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 41/146 (28%), Positives = 72/146 (49%), Gaps = 5/146 (3%)

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            + +  ++ P   KP   GSS+GI   +  + +   L    ++ +  ++L+EQ V+  E+
Sbjct: 4   AEVEEKLTYPVFTKPSNMGSSVGISKSENQEELRQAL--ELAFQYDSRILVEQGVNAREI 61

Query: 178 TCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
             G++G+  +  T     V    FY Y+ KY     T  +PAKI  D+   +++ A  A 
Sbjct: 62  EVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAF 121

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLE 261
           +AIG  G+SR DF +     ++F  E
Sbjct: 122 RAIGGLGLSRCDFFYTDK-GEIFLNE 146


>gi|6434087|emb|CAB60640.1| D-ala,D-ala ligase [Streptococcus pneumoniae]
 gi|6634597|emb|CAB64489.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae]
          Length = 147

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 41/146 (28%), Positives = 72/146 (49%), Gaps = 5/146 (3%)

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            + +  ++ P   KP   GSS+GI   +  + +   L    ++ +  ++L+EQ V+  E+
Sbjct: 4   AEVEEKLAYPVFTKPSNMGSSVGISKSENQEELRQAL--ELAFRYDSRVLVEQGVNAREI 61

Query: 178 TCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
             G++G+  +  T     V    FY Y+ KY     T  +PAKI  D+   +++ A  A 
Sbjct: 62  EVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAF 121

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLE 261
           +AIG  G+SR DF +     ++F  E
Sbjct: 122 RAIGGLGLSRCDFFYTDR-GEIFLNE 146


>gi|3821385|emb|CAA13259.1| D-alanine D-alanine ligase [Streptococcus pneumoniae]
 gi|48525838|gb|AAT45129.1| D-alanine D-alanine ligase [Streptococcus mitis]
 gi|48525844|gb|AAT45132.1| D-alanine D-alanine ligase [Streptococcus mitis]
 gi|48525848|gb|AAT45134.1| D-alanine D-alanine ligase [Streptococcus mitis]
          Length = 147

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 41/146 (28%), Positives = 72/146 (49%), Gaps = 5/146 (3%)

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            + +  ++ P   KP   GSS+GI   +  + +   L    ++ +  ++L+EQ V+  E+
Sbjct: 4   AEVEEKLAYPVFTKPSNMGSSVGISKSENQEELRQAL--ELAFQYDSRVLVEQGVNAREI 61

Query: 178 TCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
             G++G+  +  T     V    FY Y+ KY     T  +PAKI  D+   +++ A  A 
Sbjct: 62  EVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAF 121

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLE 261
           +AIG  G+SR DF +     ++F  E
Sbjct: 122 RAIGGLGLSRCDFFYTDK-GEIFLNE 146


>gi|156146816|gb|ABU53420.1| D-alanylalanine synthetase [Streptococcus oralis]
          Length = 147

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 41/145 (28%), Positives = 70/145 (48%), Gaps = 5/145 (3%)

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           + +  ++ P   KP   GSS+GI   +    +   L    ++ +  ++L+EQ V+  E+ 
Sbjct: 5   EVEEKLTYPVFTKPSNMGSSVGISKSENQDELRQAL--ELAFQYDSRVLVEQGVNAREIE 62

Query: 179 CGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
            G++G+  +  T     V    FY Y+ KY     T  +PAKI  D+   ++  A  A +
Sbjct: 63  VGLLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKITMDIPAKISDDVVAIMRHNAETAFR 122

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLE 261
           AIG  G+SR DF +     ++F  E
Sbjct: 123 AIGGLGLSRCDFFYTDR-GEIFLNE 146


>gi|156146000|gb|ABU53061.1| D-alanylalanine synthetase [Streptococcus mitis]
          Length = 147

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 42/146 (28%), Positives = 72/146 (49%), Gaps = 5/146 (3%)

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            + +  ++ P   KP   GSS+GI   +  + +   L    ++ +  ++L+EQ V+  E+
Sbjct: 4   AEVEEKLAYPVFTKPSNMGSSVGISKSENQEELRQALKL--AFQYDSRVLVEQGVNAREI 61

Query: 178 TCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
             G++G+  +  T     V    FY Y+ KY     T  +PAKI  D+   ++R A  A 
Sbjct: 62  EVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRRNAETAF 121

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLE 261
           +AIG  G+SR DF +     ++F  E
Sbjct: 122 RAIGGLGLSRCDFFYTDK-GEIFLNE 146


>gi|2766041|emb|CAB16982.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae]
 gi|2766087|emb|CAB17005.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae]
 gi|2766131|emb|CAB17027.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae]
 gi|3821397|emb|CAA13265.1| D-alanine D-alanine ligase [Streptococcus pneumoniae]
 gi|148711407|gb|ABR02130.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711421|gb|ABR02137.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711423|gb|ABR02138.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711431|gb|ABR02142.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711465|gb|ABR02159.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711591|gb|ABR02222.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711741|gb|ABR02297.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
          Length = 147

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 41/146 (28%), Positives = 72/146 (49%), Gaps = 5/146 (3%)

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            + +  ++ P   KP   GSS+GI   +  + +   L    ++ +  ++L+EQ V+  E+
Sbjct: 4   AEVEEKLAYPVFTKPSNMGSSVGISRSENQEELRQALKL--AFRYDSRVLVEQGVNAREI 61

Query: 178 TCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
             G++G+  +  T     V    FY Y+ KY     T  +PAKI  D+   +++ A  A 
Sbjct: 62  EVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKVTMDIPAKISDDVVAVMRQNAETAF 121

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLE 261
           +AIG  G+SR DF +     ++F  E
Sbjct: 122 RAIGGLGLSRCDFFYTDK-GEIFLNE 146


>gi|156146806|gb|ABU53415.1| D-alanylalanine synthetase [Streptococcus oralis]
          Length = 147

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 41/146 (28%), Positives = 72/146 (49%), Gaps = 5/146 (3%)

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            + +  ++ P   KP   GSS+GI   +  + +   L    ++ +  ++L+EQ V+  E+
Sbjct: 4   AEVEKKLTYPVFTKPSNMGSSVGISKSENHEELRQAL--ELAFQYDSRVLVEQGVNAREI 61

Query: 178 TCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
             G++G+  +  T     V    FY Y+ KY     T  +PAKI  D+   +++ A  A 
Sbjct: 62  EVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAF 121

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLE 261
           +AIG  G+SR DF +     ++F  E
Sbjct: 122 RAIGGLGLSRCDFFYTDK-GEIFLNE 146


>gi|3821373|emb|CAA13253.1| D-alanine D-alanine ligase [Streptococcus pneumoniae]
          Length = 147

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 39/146 (26%), Positives = 72/146 (49%), Gaps = 5/146 (3%)

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            + +  ++ P   KP   GSS+GI   +  + +   L    ++ +  ++L+EQ V+  E+
Sbjct: 4   AEVEEKLTYPVFTKPSNMGSSVGISKSENQEELRQALKL--AFQYDSRVLVEQGVNAREI 61

Query: 178 TCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
             G++G+  +  T     V    FY Y+ KY     +  +PA I  ++   ++R A  A 
Sbjct: 62  EVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKISMDIPANISDEVIAVMRRNAETAF 121

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLE 261
           +AIG  G+SR DF +   + ++F  E
Sbjct: 122 RAIGGLGLSRCDFFYT-DTGEIFLNE 146


>gi|290794219|gb|ADD64431.1| D-alanine:D-alanine ligase [Streptococcus salivarius]
          Length = 160

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 38/161 (23%), Positives = 74/161 (45%), Gaps = 10/161 (6%)

Query: 99  VVSSCGVPVCPSILVNRFT------MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152
           ++   GVP     +            ++   ++ P  +KP   GSS+GI   + +  +  
Sbjct: 2   ILEVAGVPQVAYTVFIEGEDLEAAVAETLEKLTFPVFVKPANMGSSVGISKAENEAELRA 61

Query: 153 DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLN 210
            +  +    +  ++LIEQ V   E+  G++G+ ++  T+    V    FY Y+ KY    
Sbjct: 62  AIDLAL--KYDSRILIEQGVAAREIEVGILGNTNVKTTDPGEVVKDVAFYDYQAKYIDNK 119

Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
            T  +PA +P ++  +++  A  A +A+G  G++R DF   
Sbjct: 120 ITMDIPAHVPAEVMTQMRAYAAKAFRALGGCGLARCDFFLT 160


>gi|156146884|gb|ABU53454.1| D-alanylalanine synthetase [Streptococcus oralis]
          Length = 147

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 43/146 (29%), Positives = 71/146 (48%), Gaps = 5/146 (3%)

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            + +  +  P   KP   GSS+GI   +  + +   L    ++ +  ++L+EQ V+  E+
Sbjct: 4   AEVEEKLRYPVFTKPSNMGSSVGISKSENKEELHQAL--ELAFKYDSRVLVEQGVNAREI 61

Query: 178 TCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
             G++G+  +  T     V    FY YE KY     T  +PAKI  ++   ++R A  A 
Sbjct: 62  EVGLLGNYDVKSTLPGEVVKDVAFYDYEAKYIDNKITMDIPAKISDNVVAVMRRNAEAAF 121

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLE 261
           +AIG  G+SR DF +     +VF  E
Sbjct: 122 RAIGGLGLSRCDFFYTDK-GEVFLNE 146


>gi|148711767|gb|ABR02310.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
          Length = 147

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 41/146 (28%), Positives = 74/146 (50%), Gaps = 5/146 (3%)

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            + +  ++ P   KP   GSS+GI   +  + +   L    ++ +  ++L+EQ V+  E+
Sbjct: 4   AEVEEKLTYPVFTKPSNMGSSVGISKSENQEELRQAL--ELAFRYDSRVLVEQGVNAREI 61

Query: 178 TCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
             G++G+ ++  T     V    FY Y+ KY     T  +PAKI  D+   +++ A +A 
Sbjct: 62  EVGLLGNYNVKSTLPGEVVKDVAFYDYDAKYIDNKITMDIPAKISDDVIAVMRQNAEIAF 121

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLE 261
           +AIG  G+SR DF +     ++F  E
Sbjct: 122 RAIGGLGLSRCDFFYTDK-GEIFLNE 146


>gi|2766005|emb|CAB16964.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae]
 gi|2766011|emb|CAB16967.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae]
 gi|2766081|emb|CAB17002.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae]
 gi|2766129|emb|CAB17026.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae]
 gi|3821403|emb|CAA13268.1| D-alanine D-alanine ligase [Streptococcus pneumoniae]
          Length = 147

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 41/146 (28%), Positives = 72/146 (49%), Gaps = 5/146 (3%)

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            + +  +  P   KP   GSS+GI   +  + +   L    ++ +  ++L+EQ V+  E+
Sbjct: 4   AEVEEKLVYPVFTKPSNMGSSVGISKSENQEELRQALKL--AFRYDSRVLVEQGVNAREI 61

Query: 178 TCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
             G++G++ +  T     V    FY Y+ KY     T  +PAKI  D+   +++ A  A 
Sbjct: 62  EVGLLGNSDVKSTLPGEVVKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAF 121

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLE 261
           +AIG  G+SR DF +     ++F  E
Sbjct: 122 RAIGGLGLSRCDFFYTDK-GEIFLNE 146


>gi|156146860|gb|ABU53442.1| D-alanylalanine synthetase [Streptococcus oralis]
          Length = 147

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 41/146 (28%), Positives = 71/146 (48%), Gaps = 5/146 (3%)

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            + +  ++ P   KP   GSS+GI   +  + +   L    ++ +  ++L+EQ V+  E+
Sbjct: 4   AEVEEKLTYPVFTKPSNMGSSVGISKSENQEELRQAL--ELAFQYDSRVLVEQGVNAREI 61

Query: 178 TCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
             G++G+  +  T     V    FY Y+ KY     T  +PAKI  D+   ++  A  A 
Sbjct: 62  EVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRHNAETAF 121

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLE 261
           +AIG  G+SR DF +     ++F  E
Sbjct: 122 RAIGGLGLSRCDFFYTDK-GEIFLNE 146


>gi|3821401|emb|CAA13267.1| D-alanine D-alanine ligase [Streptococcus pneumoniae]
          Length = 147

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 41/146 (28%), Positives = 72/146 (49%), Gaps = 5/146 (3%)

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            + +  ++ P   KP   GSS+GI   +  + +   L    ++ +  ++L+EQ V+  E+
Sbjct: 4   AEVEEKLAYPVFTKPSNMGSSVGISKSENQEELRQAL--ELAFRYDSRVLVEQGVNAREI 61

Query: 178 TCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
             G++G+  +  T     V    FY Y+ KY     T  +PAKI  D+   +++ A  A 
Sbjct: 62  EVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKITMDIPAKISDDVVTVMRQNAETAF 121

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLE 261
           +AIG  G+SR DF +     ++F  E
Sbjct: 122 RAIGGLGLSRCDFFYTDK-GEIFLNE 146


>gi|19351923|emb|CAD19598.1| D-alanine D-alanine ligase [Streptococcus pneumoniae]
 gi|48525854|gb|AAT45137.1| D-alanine D-alanine ligase [Streptococcus mitis]
 gi|48525858|gb|AAT45139.1| D-alanine D-alanine ligase [Streptococcus mitis]
          Length = 147

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 41/146 (28%), Positives = 71/146 (48%), Gaps = 5/146 (3%)

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            + +  ++ P   KP   GSS+GI   +  + +   L    ++ +  ++L+EQ V+  E+
Sbjct: 4   AEVEEKLTYPVFTKPSNMGSSVGISKSENQEELRQAL--ELAFQYDSRVLVEQGVNAREI 61

Query: 178 TCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
             G++G+  +  T     V    FY Y+ KY     T  +PAKI  D    +++ A  A 
Sbjct: 62  EVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKITMDIPAKISDDEVAVMRQNAETAF 121

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLE 261
           +AIG  G+SR DF +     ++F  E
Sbjct: 122 RAIGGLGLSRCDFFYTDK-GEIFLNE 146


>gi|3821371|emb|CAA13252.1| D-alanine D-alanine ligase [Streptococcus pneumoniae]
          Length = 147

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 41/146 (28%), Positives = 72/146 (49%), Gaps = 5/146 (3%)

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            + +  ++ P   KP   GSS+GI   +  + +   L    ++ +  ++L+EQ V+  E+
Sbjct: 4   AEVEEKLAYPVFAKPSNMGSSVGISKSENQEELRQALKL--AFRYDSRVLVEQGVNAREI 61

Query: 178 TCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
             G++G+  +  T     V    FY Y+ KY     T  +PAKI  D+   +++ A  A 
Sbjct: 62  EVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAF 121

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLE 261
           +AIG  G+SR DF +     ++F  E
Sbjct: 122 RAIGGLGLSRCDFFYTDK-GEIFLNE 146


>gi|6634609|emb|CAB64495.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae]
 gi|148711623|gb|ABR02238.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
          Length = 147

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 41/146 (28%), Positives = 72/146 (49%), Gaps = 5/146 (3%)

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            + +  ++ P   KP   GSS+GI   +  + +   L    ++ +  ++L+EQ V+  E+
Sbjct: 4   AEVEGKLTYPVFTKPSNMGSSVGISKSENQEELRQAL--ELAFQYDSRILVEQGVNAREI 61

Query: 178 TCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
             G++G+  +  T     V    FY Y+ KY     T  +PAKI  D+   +++ A  A 
Sbjct: 62  EVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAF 121

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLE 261
           +AIG  G+SR DF +     ++F  E
Sbjct: 122 RAIGGLGLSRCDFFYTDK-GEIFLNE 146


>gi|156146862|gb|ABU53443.1| D-alanylalanine synthetase [Streptococcus oralis]
          Length = 147

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 41/146 (28%), Positives = 71/146 (48%), Gaps = 5/146 (3%)

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            + +  ++ P   KP   GSS+GI   +  + +   L    ++ +  ++L+EQ V+  E+
Sbjct: 4   AEVEEKLTYPVFTKPSNMGSSVGISKSENHEELRQAL--ELAFQYDSRVLVEQGVNAREI 61

Query: 178 TCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
             G++G+  +  T     V    FY Y+ KY     T  +PAKI  D+   ++  A  A 
Sbjct: 62  EVGLLGNYEVKSTLPGEVVKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRHNAETAF 121

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLE 261
           +AIG  G+SR DF +     ++F  E
Sbjct: 122 RAIGGLGLSRCDFFYTDK-GEIFLNE 146


>gi|156146858|gb|ABU53441.1| D-alanylalanine synthetase [Streptococcus oralis]
 gi|156146870|gb|ABU53447.1| D-alanylalanine synthetase [Streptococcus oralis]
          Length = 147

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 41/146 (28%), Positives = 71/146 (48%), Gaps = 5/146 (3%)

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            + +  ++ P   KP   GSS+GI   +  + +   L    ++ +  ++L+EQ V+  E+
Sbjct: 4   AEVEEKLTYPVFTKPSNMGSSVGISKSENHEELRQAL--ELAFQYDSRVLVEQGVNAREI 61

Query: 178 TCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
             G++G+  +  T     V    FY Y+ KY     T  +PAKI  D+   ++  A  A 
Sbjct: 62  EVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKITMDIPAKISDDVVAIMRHNAETAF 121

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLE 261
           +AIG  G+SR DF +     ++F  E
Sbjct: 122 RAIGGLGLSRCDFFYTDK-GEIFLNE 146


>gi|148711605|gb|ABR02229.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
          Length = 147

 Score =  133 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 40/146 (27%), Positives = 71/146 (48%), Gaps = 5/146 (3%)

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            + +  ++ P   KP   GSS+GI   +  + +   L    ++ +  ++L+EQ V+  E+
Sbjct: 4   AEVEEKLTYPVFTKPSNMGSSVGISKSENQEELRQALKL--AFQYDSRVLVEQGVNAREI 61

Query: 178 TCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
             G++G+  +  T     V    FY Y+ KY     T  +PAKI  D+   +++ A    
Sbjct: 62  EVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETTF 121

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLE 261
           +AIG  G+SR DF +     ++F  E
Sbjct: 122 RAIGGLGLSRCDFFYTDK-GEIFLNE 146


>gi|156146808|gb|ABU53416.1| D-alanylalanine synthetase [Streptococcus oralis Uo5]
 gi|156146898|gb|ABU53461.1| D-alanylalanine synthetase [Streptococcus oralis]
          Length = 147

 Score =  133 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 41/146 (28%), Positives = 71/146 (48%), Gaps = 5/146 (3%)

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            + +  ++ P   KP   GSS+GI   +  + +   L    ++ +  ++L+EQ V+  E+
Sbjct: 4   AEVEEKLTYPVFTKPSNMGSSVGISKSENHEELRQAL--ELAFQYDSRVLVEQGVNAREI 61

Query: 178 TCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
             G++G+  +  T     V    FY Y+ KY     T  +PAKI  D+   ++  A  A 
Sbjct: 62  EVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRHNAETAF 121

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLE 261
           +AIG  G+SR DF +     ++F  E
Sbjct: 122 RAIGGLGLSRCDFFYTDK-GEIFLNE 146


>gi|6634613|emb|CAB64497.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae]
          Length = 147

 Score =  133 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 41/146 (28%), Positives = 72/146 (49%), Gaps = 5/146 (3%)

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            + +  ++ P   KP   GSS+GI   +  + +   L    ++ +  ++L+EQ V+  E+
Sbjct: 4   AEVEEKLTYPVFTKPSNMGSSVGISKSENQEELRQALKL--AFQYDSRVLVEQGVNAREI 61

Query: 178 TCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
             G++G+  +  T     V    FY Y+ KY     T  +PAKI  D+   +++ A  A 
Sbjct: 62  EVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKITMDIPAKIGDDVVAVMRQNAETAF 121

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLE 261
           +AIG  G+SR DF +     ++F  E
Sbjct: 122 RAIGGLGLSRCDFFYTDK-GEIFLNE 146


>gi|156146058|gb|ABU53090.1| D-alanylalanine synthetase [Streptococcus mitis]
          Length = 147

 Score =  133 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 41/146 (28%), Positives = 72/146 (49%), Gaps = 5/146 (3%)

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            + +  ++ P   KP   GSS+GI   +  + +   L    ++ +  ++L+EQ V+  E+
Sbjct: 4   AEVEEKLTYPVFTKPSNMGSSVGISKSENQEELRQALKL--AFQYDSRVLVEQGVNAREI 61

Query: 178 TCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
             G++G+  +  T     V    FY Y+ KY     T  +PAKI  D+   +++ A  A 
Sbjct: 62  EIGLLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKITMDIPAKISDDVIAVMRQNAEAAF 121

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLE 261
           +AIG  G+SR DF +     ++F  E
Sbjct: 122 RAIGGLGLSRCDFFYTDK-GEIFLNE 146


>gi|58045580|gb|AAW65098.1| vancomycin resistance protein [Enterococcus gallinarum]
          Length = 156

 Score =  133 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 45/158 (28%), Positives = 84/158 (53%), Gaps = 10/158 (6%)

Query: 65  DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL- 123
           DG +Q +LEL+ +PY    + ASAL M+K    Q+  + G+   P++L++R+  D   + 
Sbjct: 1   DGCIQGLLELMNLPYVGCHVAASALCMNKWLLHQLADTMGIASAPTLLLSRYENDPATID 60

Query: 124 -----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                   P  IKP + GSS GI  +    ++   L  ++++ +G  +LI++ + GIE+ 
Sbjct: 61  RFIQDHGFPIFIKPNEAGSSKGITKVTDKTALQSAL--TTAFAYGSTVLIQKAIAGIEIG 118

Query: 179 CGVMGDASLDVTEIAVPK--SDFYSYELKYSSLNSTHV 214
           CG++G+  L +           F+ +E KY  +++T+ 
Sbjct: 119 CGILGNEQLTIGACDAISLVDGFFDFEEKYQLISATNH 156


>gi|156146894|gb|ABU53459.1| D-alanylalanine synthetase [Streptococcus oralis]
          Length = 147

 Score =  133 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 42/145 (28%), Positives = 72/145 (49%), Gaps = 5/145 (3%)

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           + +  ++ P   KP   GSS+GI   +  + +   L    ++ +  ++L+EQ V+  E+ 
Sbjct: 5   EVEEKLTYPVFTKPSNMGSSVGISKSENHEELRQAL--ELAFQYDSRVLVEQGVNAREIE 62

Query: 179 CGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
            G++G+  +  T     V    FY Y+ KY     T  +PAKI  D+   ++R A  A +
Sbjct: 63  VGLLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRRNAETAFR 122

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLE 261
           AIG  G+SR DF +     ++F  E
Sbjct: 123 AIGGIGLSRCDFFYTDR-GEIFLNE 146


>gi|114320877|ref|YP_742560.1| hypothetical protein Mlg_1724 [Alkalilimnicola ehrlichii MLHE-1]
 gi|114227271|gb|ABI57070.1| conserved hypothetical protein [Alkalilimnicola ehrlichii MLHE-1]
          Length = 343

 Score =  133 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 75/318 (23%), Positives = 123/318 (38%), Gaps = 36/318 (11%)

Query: 1   MAVLMG-----------GISSEREV-SLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH 48
           +AVL G           G   E EV ++   +     L   G++V  +D    +   L  
Sbjct: 12  LAVLAGDPRLPYDYGVDGRFGESEVEAVRQARVALETL--GGYRVEVLDDHDRLFDRLRE 69

Query: 49  LKPDLAFNVLHGNFG----EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCG 104
             PDLA N     +      +  V A+LELLEIPYT +     ++  DK   + + +S G
Sbjct: 70  APPDLALNFCDTGYRNQLRHEQNVPALLELLEIPYTGATPACMSICGDKALVRLLAASHG 129

Query: 105 VPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGI---IVIKKDQSIPLDLLQSSSWN 161
           +PV     V+            P +IKP  G  S G+    V+   Q     L Q +   
Sbjct: 130 IPVPNETFVDLTADPMVLPELYPALIKPNAGCGSQGVTPDSVVHDAQQARACLEQLALEP 189

Query: 162 HGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDF----------YSYELKYSSLN- 210
              Q LI+ ++ G E T G++G+     T + + + D+           SY  K    + 
Sbjct: 190 ERPQALIQDFLTGAEYTLGLVGNPETGFTVLPLLEIDYSRLPADLPPILSYGSKVDPNSA 249

Query: 211 ---STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPG 267
              S    PA++  +    +   +    + +G R  +R D+    +      L+ N  P 
Sbjct: 250 YWQSLRFKPAELAPEHQAAMVEHSVFLFERLGFRDYARFDYRC-GVDGVPRLLDANFNPT 308

Query: 268 MTPVSIFPEMAAYAGYSF 285
            +       MA +AGY +
Sbjct: 309 WSYDGKMAIMAGWAGYEY 326


>gi|6634611|emb|CAB64496.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae]
 gi|148711679|gb|ABR02266.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711719|gb|ABR02286.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711721|gb|ABR02287.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711723|gb|ABR02288.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711757|gb|ABR02305.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711759|gb|ABR02306.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|156145994|gb|ABU53058.1| D-alanylalanine synthetase [Streptococcus mitis]
          Length = 147

 Score =  133 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 41/146 (28%), Positives = 72/146 (49%), Gaps = 5/146 (3%)

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            + +  ++ P   KP   GSS+GI   +  + +   L    ++ +  ++L+EQ V+  E+
Sbjct: 4   AEVEEKLTYPVFTKPSNMGSSVGISKSENQEELRQAL--ELAFQYDSRVLVEQGVNAREI 61

Query: 178 TCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
             G++G+  +  T     V    FY Y+ KY     T  +PAKI  D+   +++ A  A 
Sbjct: 62  EVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKITMDIPAKIGDDVVAVMRQNAETAF 121

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLE 261
           +AIG  G+SR DF +     ++F  E
Sbjct: 122 RAIGGLGLSRCDFFYTDK-GEIFLNE 146


>gi|2766003|emb|CAB16963.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae]
 gi|3821364|emb|CAA13249.1| D-alanine D-alanine ligase [Streptococcus pneumoniae]
 gi|148711449|gb|ABR02151.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711497|gb|ABR02175.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711503|gb|ABR02178.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711641|gb|ABR02247.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
          Length = 147

 Score =  133 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 41/146 (28%), Positives = 71/146 (48%), Gaps = 5/146 (3%)

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            + +  +  P   KP   GSS+GI   +  + +   L    ++ +  ++L+EQ V+  E+
Sbjct: 4   AEVEEKLVYPVFTKPSNMGSSVGISKSENQEELRQALKL--AFRYDSRVLVEQGVNAREI 61

Query: 178 TCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
             G++G+  +  T     V    FY Y+ KY     T  +PAKI  D+   +++ A  A 
Sbjct: 62  EVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAF 121

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLE 261
           +AIG  G+SR DF +     ++F  E
Sbjct: 122 RAIGGLGLSRCDFFYTDK-GEIFLNE 146


>gi|6434089|emb|CAB60641.1| D-ala,D-ala ligase [Streptococcus pneumoniae]
 gi|6634599|emb|CAB64490.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae]
          Length = 147

 Score =  133 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 41/146 (28%), Positives = 71/146 (48%), Gaps = 5/146 (3%)

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            + +  +  P   KP   GSS+GI   +  + +   L    ++ +  ++L+EQ V+  E+
Sbjct: 4   AEVEEKLVYPVFTKPSNMGSSVGISKSENQEELRQAL--ELAFRYDSRVLVEQGVNAREI 61

Query: 178 TCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
             G++G+  +  T     V    FY Y+ KY     T  +PAKI  D+   +++ A  A 
Sbjct: 62  EVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAF 121

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLE 261
           +AIG  G+SR DF +     ++F  E
Sbjct: 122 RAIGGLGLSRCDFFYTDK-GEIFLNE 146


>gi|148711621|gb|ABR02237.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
          Length = 147

 Score =  133 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 42/146 (28%), Positives = 72/146 (49%), Gaps = 5/146 (3%)

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            + +  ++ P   KP   GSS+GI   +  + +   L    ++ +  ++L+EQ V+  E+
Sbjct: 4   AEVEEKLTYPVFTKPSNMGSSVGISKSENQEELRQAL--ELAFQYDSRVLVEQGVNAREI 61

Query: 178 TCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
             G++G+  +  T     V    FY Y+ KY     T  +PAKI  D+   +++ A  A 
Sbjct: 62  EVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKITMDIPAKIGDDVVAVMRQNAETAF 121

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLE 261
           +AIG  G+SR DF +     +VF  E
Sbjct: 122 RAIGGLGLSRCDFFYTDK-GEVFLNE 146


>gi|148976820|ref|ZP_01813492.1| D-alanine-D-alanine ligase family protein [Vibrionales bacterium
           SWAT-3]
 gi|148976985|ref|ZP_01813631.1| D-alanine-D-alanine ligase family protein [Vibrionales bacterium
           SWAT-3]
 gi|148977459|ref|ZP_01814048.1| D-alanine-D-alanine ligase family protein [Vibrionales bacterium
           SWAT-3]
 gi|145963254|gb|EDK28520.1| D-alanine-D-alanine ligase family protein [Vibrionales bacterium
           SWAT-3]
 gi|145963645|gb|EDK28906.1| D-alanine-D-alanine ligase family protein [Vibrionales bacterium
           SWAT-3]
 gi|145963933|gb|EDK29192.1| D-alanine-D-alanine ligase family protein [Vibrionales bacterium
           SWAT-3]
          Length = 384

 Score =  133 bits (335), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 63/342 (18%), Positives = 132/342 (38%), Gaps = 55/342 (16%)

Query: 1   MAVLMGGISSEREVSL-------SS-------GKACASALEDAGFK-VSQIDVDRSVGLV 45
           +AV+ GG   E++ S         S           A+AL ++ F+ V  +  D ++   
Sbjct: 20  IAVIHGGD-KEQDGSFIFENLSPRSTKTYAPVAHDIANALRESNFQFVEVLAEDINLAQC 78

Query: 46  LAHLKPDLAFNVLHGNFGEDG--LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103
           L     DL      G  G D    + + LE+L +PY     + + +  +K   K  + + 
Sbjct: 79  LKDKGIDLVITNSGGLQGFDSMCHLPSTLEMLGVPYVGHSPMTAGILDNKHLFKHEIKAA 138

Query: 104 GVPVCPSIL--VNRFTMDS---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152
           G+P  P I   ++    D+         +      +++KP+ G +S+ +  +     +  
Sbjct: 139 GLPTAPFITIGIDEHFEDAAKQDAIDQIEAQFKDGFIVKPVSGRASIHVYPVFNRNDL-A 197

Query: 153 DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD--------------ASLDVTEIAVPKSD 198
            +++      G+ ++IE ++ G E    V G+               +  +TE  +   +
Sbjct: 198 GVVEHVRQATGNTVMIEPFLGGREFVVAVAGEYVFKEGKLTQFEMPMAFSITERVLDADE 257

Query: 199 --FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256
             F S ++K     +   L A     +  ++  +    ++ +G + + R D   D     
Sbjct: 258 PIFTSMDVKPI---TQDRLVAVNEEGLRNQLALIGQKIYRQLGLQTLVRVDLRMDKEGN- 313

Query: 257 VFWLEINVQPGM-----TPVSIFPEMAAYAGYSFRELLLWMV 293
           ++ LE N +P +       VS+     A  G  + +L+  +V
Sbjct: 314 LYVLETNPKPDLKRPEGEKVSLVCHDLAREGMDYTDLVQSLV 355


>gi|3821342|emb|CAA13245.1| D-alanine D-alanine ligase [Streptococcus mitis]
 gi|19351919|emb|CAD19596.1| D-alanine D-alanine ligase [Streptococcus pneumoniae]
 gi|19351921|emb|CAD19597.1| D-alanine D-alanine ligase [Streptococcus pneumoniae]
 gi|123204379|gb|ABM73540.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711603|gb|ABR02228.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
          Length = 147

 Score =  133 bits (335), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 41/146 (28%), Positives = 72/146 (49%), Gaps = 5/146 (3%)

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            + +  ++ P   KP   GSS+GI   +  + +   L    ++ +  ++L+EQ V+  E+
Sbjct: 4   AEVEEKLTYPVFTKPSNMGSSVGISKSENQEELRQALKL--AFQYDSRVLVEQGVNAREI 61

Query: 178 TCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
             G++G+  +  T     V    FY Y+ KY     T  +PAKI  D+   +++ A  A 
Sbjct: 62  EVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKITMDIPAKISDDVVVVMRQNAETAF 121

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLE 261
           +AIG  G+SR DF +     ++F  E
Sbjct: 122 RAIGGLGLSRCDFFYTDK-GEIFLNE 146


>gi|6434095|emb|CAB60644.1| D-ala,D-ala ligase [Streptococcus pneumoniae]
 gi|6634617|emb|CAB64499.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae]
 gi|148711507|gb|ABR02180.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
          Length = 147

 Score =  133 bits (335), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 41/146 (28%), Positives = 72/146 (49%), Gaps = 5/146 (3%)

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            + +  ++ P   KP   GSS+GI   +  + +   L    ++ +  ++L+EQ V+  E+
Sbjct: 4   AEVEEKLAYPVFTKPSNMGSSVGISKSENQEELRQALKL--AFQYDSRVLVEQGVNAREI 61

Query: 178 TCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
             G++G+  +  T     V    FY Y+ KY     T  +PAKI  D+   +++ A  A 
Sbjct: 62  EVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAF 121

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLE 261
           +AIG  G+SR DF +     ++F  E
Sbjct: 122 RAIGGLGLSRCDFFYTDKE-EIFLNE 146


>gi|881495|gb|AAA68950.1| unknown [Thermotoga maritima MSB8]
          Length = 128

 Score =  133 bits (335), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 47/117 (40%), Positives = 68/117 (58%), Gaps = 2/117 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK-PDLAFNVLH 59
           +A+LMGG+S ERE+SL SG+    ALE  G++ +  DV       +  LK  D+ FNVLH
Sbjct: 13  VALLMGGVSREREISLRSGERVKKALEKLGYEHTVFDVREDFLKKVDQLKSFDVVFNVLH 72

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116
           G FGEDG +QAIL+ L I YT S   +S +  DK+ + + +    V +   + +  F
Sbjct: 73  GTFGEDGTLQAILDFLGIRYTGSDAFSSMICFDKLVTYRFLKGT-VEIPDFVEIKEF 128


>gi|3947731|emb|CAA13579.1| D-alanine D-alanine ligase [Streptococcus pneumoniae]
          Length = 146

 Score =  133 bits (335), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 41/146 (28%), Positives = 72/146 (49%), Gaps = 5/146 (3%)

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            + +  ++ P   KP   GSS+GI   +  + +   L    ++ +  ++L+EQ V+  E+
Sbjct: 4   AEVEEKLAYPVFTKPSNMGSSVGISKSENQEELRQALKL--AFQYDSRVLVEQGVNAREI 61

Query: 178 TCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
             G++G+  +  T     V    FY Y+ KY     T  +PAKI  D+   +++ A  A 
Sbjct: 62  EVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAF 121

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLE 261
           +AIG  G+SR DF +     ++F  E
Sbjct: 122 RAIGGLGLSRCDFFYTDKE-EIFLNE 146


>gi|289746780|ref|ZP_06506158.1| D-alanyl-alanine synthetase A [Mycobacterium tuberculosis 02_1987]
 gi|289687308|gb|EFD54796.1| D-alanyl-alanine synthetase A [Mycobacterium tuberculosis 02_1987]
          Length = 133

 Score =  132 bits (334), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 34/115 (29%), Positives = 54/115 (46%), Gaps = 2/115 (1%)

Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244
             + V  +   +  FY +  KY    +   +PAK+   + + +++LA  A  AI CRG++
Sbjct: 16  GEIRVAGVRGREDSFYDFATKYLDDAAELDVPAKVDDQVAEAIRQLAIRAFAAIDCRGLA 75

Query: 245 RSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
           R DF            EIN  PG T +S++P M   +G  +  LL  M+E A   
Sbjct: 76  RVDFFLT--DDGPVINEINTMPGFTTISMYPRMWEASGVDYPTLLATMIETALAR 128


>gi|2766007|emb|CAB16965.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae]
 gi|2766109|emb|CAB17016.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae]
 gi|3821395|emb|CAA13264.1| D-alanine D-alanine ligase [Streptococcus pneumoniae]
 gi|148711443|gb|ABR02148.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711447|gb|ABR02150.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711463|gb|ABR02158.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711479|gb|ABR02166.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
          Length = 147

 Score =  132 bits (334), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 41/146 (28%), Positives = 72/146 (49%), Gaps = 5/146 (3%)

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            + +  +  P   KP   GSS+GI   +  + +   L    ++ +  ++L+EQ V+  E+
Sbjct: 4   AEVEEKLVYPVFTKPSNMGSSVGISKSENQEELRQALKL--AFRYDSRVLVEQGVNAREI 61

Query: 178 TCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
             G++G+  +  T     V    FY Y+ KY     T  +PAKI  D+   +++ A +A 
Sbjct: 62  EVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAEIAF 121

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLE 261
           +AIG  G+SR DF +     ++F  E
Sbjct: 122 RAIGGLGLSRCDFFYTDK-GEIFLNE 146


>gi|239509132|gb|ACR81555.1| VtsA [Listonella anguillarum]
          Length = 384

 Score =  132 bits (333), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 65/342 (19%), Positives = 132/342 (38%), Gaps = 55/342 (16%)

Query: 1   MAVLMGGISSEREVSL-------SS-------GKACASALEDAGFK-VSQIDVDRSVGLV 45
           +AV+ GG   E+E S         S           A+AL ++ F+ V  +  D ++   
Sbjct: 20  IAVIHGGD-KEQEGSFIFENLSPRSTKTYAPVAHDIANALRESNFQFVEVLAEDINLAQC 78

Query: 46  LAHLKPDLAFNVLHGNFGEDG--LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103
           L     DL      G  G D    + + LE+L +PY     + + +  +K   K  + + 
Sbjct: 79  LKDKGIDLVITNSGGLQGFDSMCHLPSTLEMLGVPYVGHSPMTAGILDNKHLFKHEIKAA 138

Query: 104 GVPVCPSIL--VNRFTMDS---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152
           G+P  P I   ++    D          +      +++KP+ G +S+ +  + K   +  
Sbjct: 139 GLPTAPFITIGIDEHFEDVAKQDAIDQIEAQFKDGFIVKPVSGRASIHVYPVFKRNDL-A 197

Query: 153 DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD--------------ASLDVTEIAVPKSD 198
            +++      G+ ++IE ++ G E    V G+               +  +TE  +   +
Sbjct: 198 GVVEHVRQATGNTVMIEPFLGGREFVVAVAGEYVFKEGKLTQSEMPMAFSITERVLDADE 257

Query: 199 --FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256
             F S ++K     +   L A     +  ++  +    ++ +G + + R D   D     
Sbjct: 258 PIFTSMDVKPI---TQDRLVAVNEEGLRNQLALIGQKIYRLLGLQTLVRVDLRMDKEGN- 313

Query: 257 VFWLEINVQPGM-----TPVSIFPEMAAYAGYSFRELLLWMV 293
           ++ LE N +P +       VS+     A  G  + +L+  +V
Sbjct: 314 LYVLETNPKPDLKRPEGEKVSLVCHDLAREGMDYTDLVQSLV 355


>gi|148711807|gb|ABR02330.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
          Length = 147

 Score =  132 bits (333), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 42/146 (28%), Positives = 73/146 (50%), Gaps = 5/146 (3%)

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
           ++ +  ++ P   KP   GSS+GI   +  + +   L    ++ +  ++L+EQ VD  E+
Sbjct: 4   VEVEEKLTYPVFTKPSNMGSSVGISKSENQEELRQALKL--AFQYDSRVLVEQGVDAREI 61

Query: 178 TCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
             G++G+  +  T     V    FY Y+ KY     T  +PAKI  D+   +++ A  A 
Sbjct: 62  EVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAF 121

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLE 261
           +AIG  G+SR DF +     ++F  E
Sbjct: 122 RAIGGLGLSRCDFFYTDK-GEIFPNE 146


>gi|148711651|gb|ABR02252.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
          Length = 147

 Score =  132 bits (333), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 41/146 (28%), Positives = 71/146 (48%), Gaps = 5/146 (3%)

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            + +  ++ P   KP   GSS+GI   +  + +   L    ++ +  ++L+EQ V+  E+
Sbjct: 4   AEVEEKLAYPVFTKPSNMGSSVGISKSENQEELRQALKL--AFRYDSRVLVEQGVNAREI 61

Query: 178 TCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
             G++G+  +  T     V    FY Y+ KY     T  +PAKI  D+   +++ A  A 
Sbjct: 62  EVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKVTMDIPAKISDDVVAVMRQNAETAF 121

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLE 261
            AIG  G+SR DF +     ++F  E
Sbjct: 122 CAIGGLGLSRCDFFYTDK-GEIFLNE 146


>gi|215404957|ref|ZP_03417138.1| D-alanyl-alanine synthetase A [Mycobacterium tuberculosis 02_1987]
          Length = 134

 Score =  132 bits (333), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 34/115 (29%), Positives = 54/115 (46%), Gaps = 2/115 (1%)

Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244
             + V  +   +  FY +  KY    +   +PAK+   + + +++LA  A  AI CRG++
Sbjct: 17  GEIRVAGVRGREDSFYDFATKYLDDAAELDVPAKVDDQVAEAIRQLAIRAFAAIDCRGLA 76

Query: 245 RSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
           R DF            EIN  PG T +S++P M   +G  +  LL  M+E A   
Sbjct: 77  RVDFFLT--DDGPVINEINTMPGFTTISMYPRMWEASGVDYPTLLATMIETALAR 129


>gi|156146054|gb|ABU53088.1| D-alanylalanine synthetase [Streptococcus mitis]
          Length = 147

 Score =  132 bits (332), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 42/146 (28%), Positives = 72/146 (49%), Gaps = 5/146 (3%)

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            + +  ++ P   KP   GSS+GI   +  + +   L    ++ +  ++L+EQ V+  E+
Sbjct: 4   AEVEEKLAYPVFTKPSNMGSSVGISKSENQEELRQSLKL--AFQYDSRVLVEQGVNAREI 61

Query: 178 TCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
             G++G+  +  T     V    FY Y+ KY     T  +PAKI  D+   ++R A  A 
Sbjct: 62  EVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRRNAETAF 121

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLE 261
           +AIG  G+SR DF +     ++F  E
Sbjct: 122 RAIGGLGLSRCDFFYTDK-GEIFLNE 146


>gi|148711669|gb|ABR02261.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
          Length = 147

 Score =  132 bits (332), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 41/146 (28%), Positives = 72/146 (49%), Gaps = 5/146 (3%)

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            + +  ++ P   KP   GSS+GI   +  + +   L    ++ +  ++L+EQ V+  E+
Sbjct: 4   AEVEEKLTYPVFTKPSNMGSSVGISKSENQEELRQALKL--AFQYDSRVLVEQGVNAREI 61

Query: 178 TCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
             G++G+  +  T     V    FY Y+ KY     T  +PAKI  D+   +++ A  A 
Sbjct: 62  EIGLLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKITMDIPAKISDDVVVVMRQNAETAF 121

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLE 261
           +AIG  G+SR DF +     ++F  E
Sbjct: 122 RAIGGLGLSRCDFFYTDK-GEIFLNE 146


>gi|3983141|gb|AAC83823.1| putative D-alanine:D-alanine ligase [Paenibacillus popilliae]
          Length = 158

 Score =  131 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 39/154 (25%), Positives = 69/154 (44%), Gaps = 13/154 (8%)

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPY 128
           PY  +G+LAS++ MDK   K V +  G+P C      R   D          Q  +  P 
Sbjct: 7   PYVGAGVLASSVGMDKAIMKHVFAHAGLPQCKYEHFLRREWDQNQAEILDRVQTELGYPC 66

Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL- 187
            +KP   GSS+GI   +    +   +  +    +  ++++E++VD  E+   V+G+    
Sbjct: 67  FVKPANLGSSVGISKARNAAELKQAIELAL--QYDRKIIVEEFVDAREVEVSVLGNDEPQ 124

Query: 188 -DVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
             +    +  ++FY Y+ KY    S   +PA + 
Sbjct: 125 ASIPGEIISSNEFYDYKAKYIDGKSQIAIPAPLD 158


>gi|148711643|gb|ABR02248.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
          Length = 147

 Score =  131 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 41/146 (28%), Positives = 71/146 (48%), Gaps = 5/146 (3%)

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            + +  +  P   KP   GSS+GI   +  + +   L    ++ +  ++L+EQ V+  E+
Sbjct: 4   AEVEEKLVYPVFTKPSNMGSSVGISKSENQEELRQALKL--AFRYDSRVLVEQGVNAREI 61

Query: 178 TCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
             G++G+  +  T     V    FY Y+ KY     T  +PAKI  D+   +++ A  A 
Sbjct: 62  EVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKITMDIPAKISDDVVVVMRQNAETAF 121

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLE 261
           +AIG  G+SR DF +     ++F  E
Sbjct: 122 RAIGGLGLSRCDFFYTDK-GEIFLNE 146


>gi|115384442|ref|XP_001208768.1| predicted protein [Aspergillus terreus NIH2624]
 gi|114196460|gb|EAU38160.1| predicted protein [Aspergillus terreus NIH2624]
          Length = 292

 Score =  131 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 61/272 (22%), Positives = 105/272 (38%), Gaps = 35/272 (12%)

Query: 60  GNFGEDGLVQAILELL--------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           G+  +D  ++ I E L         +P     +   A    K     V+    +P  P +
Sbjct: 9   GDLADDTTIKGISEALQTLGHHVIHVPGIKPLVNHLASGDQKDWDLMVLKHHNIPTSPFL 68

Query: 112 LVNRFTMDS-----QHLISPPYVIKPLKGGSSLGII---VIKKDQSIPLDLLQSSSWNHG 163
           +V R          +  +  P   KP+   +S GI     I+K +     +    S    
Sbjct: 69  VVPRLGEPVDYTLLEDQLPYPLFAKPVAASTSNGITASNKIQKKEKFRSVVEDLRSQFPE 128

Query: 164 DQLLIEQYVDGIELTCGVMGDAS----LDVTEIAV--PKS--------DFYSYELKYSSL 209
             +L+E ++ G E T G++G       L V+E+    PK         DF +   K    
Sbjct: 129 QDVLVETFLAGREFTVGILGTGEDARVLGVSEVTWYNPKGGCDEDGCVDFATIFSKSGGA 188

Query: 210 NST--HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF--DPLSRKVFWLEINVQ 265
           +    H        D    V ++A  A++ +GCR   R D  F  D      + +E+N  
Sbjct: 189 DKDMGHTHVELEGDDQMARVSQVALDAYKGLGCRDAGRVDVRFGPDGDGSNPYVIEVNPI 248

Query: 266 PGMTP-VSIFPEMAAYAGYSFRELLLWMVEDA 296
            G+ P  S++  +A   G S+ +LL  ++E+A
Sbjct: 249 FGLNPNHSLYTWIAKNNGLSYTDLLQNIIENA 280


>gi|187735236|ref|YP_001877348.1| hypothetical protein Amuc_0730 [Akkermansia muciniphila ATCC
           BAA-835]
 gi|187425288|gb|ACD04567.1| conserved hypothetical protein [Akkermansia muciniphila ATCC
           BAA-835]
          Length = 341

 Score =  131 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 62/284 (21%), Positives = 119/284 (41%), Gaps = 19/284 (6%)

Query: 21  ACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLH--GNFGEDGLVQAILELLEIP 78
               A++D G+ V  +   +   +  A    D  F++++       +  + +  E +++P
Sbjct: 48  NIYKAIQDIGYDV--VSSSKPYSVQFAKGNVDYVFSLMNRFAMSRPEIFISSYCEFIQVP 105

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN-RFTMDSQHLISPPYVIKPLKGGS 137
           Y  +     A++ DK  +K V  S  + V   I ++    + +Q     PY +K   G +
Sbjct: 106 YLGAPPNIRAIAEDKFLTKMVFRSLELNVPEGIGLSGEKGIPAQAPFPGPYFVKKRFGAA 165

Query: 138 SLGI---IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194
           S GI    +    +++            G ++L+EQY +GI++T  V+G  +  +     
Sbjct: 166 SGGIREDSICSSWKAVGS--CARRLMEEGHEVLVEQYCEGIDVTVPVLGGENPVILGYVQ 223

Query: 195 PKSD----FYSYELK-YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
           PKSD      + +LK +  L    V    +  DI  +V+        A+G     R D+ 
Sbjct: 224 PKSDKPGSIITEDLKLHDHLGYQLVSVQDMEQDIASDVR----KIWSALGPMDYFRIDYR 279

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            D  + +   LE+N+   +         AA  GYS  +LL +++
Sbjct: 280 IDFETGERRILEMNICCHLGKSGSICLAAAEHGYSQADLLKYII 323


>gi|148711613|gb|ABR02233.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
          Length = 147

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 41/146 (28%), Positives = 72/146 (49%), Gaps = 5/146 (3%)

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            + +  ++ P   KP   GSS+GI   +  + +   L    ++ +  ++L+EQ V+  E+
Sbjct: 4   AEVEEKLTYPVFTKPSNMGSSVGISKSENQEELRQSLKL--AFQYDSRVLVEQGVNAREI 61

Query: 178 TCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
             G++G+  +  T     V    FY Y+ KY     T  +PAKI  D+   ++R +  A 
Sbjct: 62  EVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRRNSETAF 121

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLE 261
           +AIG  G+SR DF +     ++F  E
Sbjct: 122 RAIGGLGLSRCDFFYTDK-GEIFLNE 146


>gi|167041454|gb|ABZ06205.1| putative D-ala D-ala ligase [uncultured marine microorganism
           HF4000_007D16]
          Length = 357

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 60/292 (20%), Positives = 112/292 (38%), Gaps = 20/292 (6%)

Query: 20  KACASALEDAGFKVSQIDV-DRSVGLVLAHLKPDLAFNVLHGNFGEDGLV--QAILELLE 76
           K   + L      VS  ++   +    LA  KPDL F+ +   + + G++     LEL +
Sbjct: 66  KLILNILSKRYRNVSITEINTENDLKKLALRKPDLVFSGVKYFYFDSGIIWLNDYLELYD 125

Query: 77  IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLK 134
           I Y  S   A     DK  +K+++    +               +    I+ P  IKPL 
Sbjct: 126 ISYIASNREALHNEHDKSIAKKIMQKANIKTADFFTTEPGEHLTEMSIPIAFPLFIKPLT 185

Query: 135 GGSSLGIIVIKKDQSIP--LDLLQSSSWNHGDQLLIEQYVDGIELTCGVM-----GDASL 187
           GG S G+               +         + L+E Y+ G E +  ++     G+   
Sbjct: 186 GGDSRGVDKNSIVYDFLSFQAKVLDIKRKQNLRSLVETYLPGKEYSVSILQDNSNGNLKA 245

Query: 188 DVTEIAVPKSD----FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
              EI V K+        Y++K    N    + A     IY ++  L+  A +A+G + +
Sbjct: 246 MPIEIVVDKNINGHCILDYDIKK---NDQEKVIAVTDNKIYNQLSDLSKDAFKALGGKSL 302

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
            R D   +  +    ++E N+ PG+    ++       G  + +++L + + 
Sbjct: 303 GRIDIKMN-HNGVPHFIEANLMPGLRNGYLYRACLFNLGMGYEQMILTIADT 353


>gi|325972387|ref|YP_004248578.1| D-alanine--D-alanine ligase domain protein [Spirochaeta sp. Buddy]
 gi|324027625|gb|ADY14384.1| D-alanine--D-alanine ligase domain protein [Spirochaeta sp. Buddy]
          Length = 310

 Score =  130 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 61/299 (20%), Positives = 114/299 (38%), Gaps = 34/299 (11%)

Query: 16  LSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGED---GLVQAIL 72
           L   +  A  L + G+  + +    S    L      + FN++     E+    LV  IL
Sbjct: 23  LRQAQWIAEILTEKGYATTLLPYSLSALEQLEKSV--VVFNLVDSAPKEELLSYLVPGIL 80

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKP 132
           E L + YT   + +  LS DK+ +K+++S   +P           + S+      Y+IKP
Sbjct: 81  ESLHLRYTGCSLSSLFLSTDKVLAKRLLSEHTLPTP--------ALYSKESEKGLYLIKP 132

Query: 133 LKGGSSLGII-VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS----L 187
               +S+G+      +      +L+      G     EQY+DG E T  + G       L
Sbjct: 133 TTQDASVGLDEQCLVEHDRVQAVLREKEQEVGCPCFAEQYIDGREFTVCMYGTKEEAHIL 192

Query: 188 DVTEIAVPKSD----FYSYELK-------YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
              E             +Y+ K       Y  + + +    +    + +++ +++     
Sbjct: 193 PPYEWVFNDYGQNAKIITYDAKWTENTFGYEHITAKYTHD-EADKALLQQLVQISTSCWN 251

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
                G +R DF  D  +R  + LE+N  P         +      +SF +++L++VE 
Sbjct: 252 VFDLHGYARVDFRVDDQNR-PYILELNANPSFYGFYHLAKEWL---FSFEDIVLFLVEH 306


>gi|42794963|gb|AAS45837.1| putative D-alanine:D-alanine ligase [Clostridium difficile]
 gi|42794969|gb|AAS45840.1| putative D-alanine:D-alanine ligase [Clostridium difficile]
          Length = 141

 Score =  130 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 41/137 (29%), Positives = 74/137 (54%), Gaps = 4/137 (2%)

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            +    ++ P  IKP++ GSS GI  I K + + + +    ++ H ++++IE+ +DG E+
Sbjct: 7   AELSKDLTYPLFIKPVRAGSSFGISKIYKKEELQVAVDL--AFEHDNEVIIEENIDGFEV 64

Query: 178 TCGVMGDASLDVTEIAVPK--SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
            C V+G+  L V  +   +    F+ Y  KY+  +S   +PA+I LD  K +Q  A + +
Sbjct: 65  GCAVLGNDDLLVGRVDEIELSKGFFDYTEKYTLKSSKIHMPARIDLDCEKRIQETAKIIY 124

Query: 236 QAIGCRGISRSDFLFDP 252
           + +GC G +R D    P
Sbjct: 125 RTLGCSGFARVDMFLTP 141


>gi|256829553|ref|YP_003158281.1| hypothetical protein Dbac_1774 [Desulfomicrobium baculatum DSM
           4028]
 gi|256578729|gb|ACU89865.1| protein of unknown function DUF201 [Desulfomicrobium baculatum DSM
           4028]
          Length = 340

 Score =  130 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 65/304 (21%), Positives = 127/304 (41%), Gaps = 30/304 (9%)

Query: 19  GKACASALEDAGFKV--SQIDVDRS-VGLVLAHLKPDLAFNV---LHGNFGEDGLVQAIL 72
            ++   +L   G++     +  D S +   LAH +P++ FN+    HG      L  A+ 
Sbjct: 28  ARSVRESLARCGWRTSEHVLGSDPSALETSLAHRRPNVIFNLVESCHGLASLACLAPALF 87

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPP--YVI 130
                P+T +   + AL+ DK  +++++ + G+PV P + +       + +   P  Y+I
Sbjct: 88  RKAGFPFTGADEGSMALAGDKALARRLLHAAGLPVPPGVTMGELQ---RGVFPGPGTYII 144

Query: 131 KPLKGGSSLGII---VIKKDQSIP-LDLLQSSSWNHGDQLLIEQYVDGIELTCGVM---- 182
           K     +SLG+    V+   +    L  ++  +   G   + E YV G E    ++    
Sbjct: 145 KARFEDASLGLGPDCVVDVREGAELLAAMREFAPRMGGDCVAEGYVRGREFNLALLAEPG 204

Query: 183 -GDASLDVTEIA----VPKSDFYSYELKYSSLNSTH---VLPAKIP--LDIYKEVQRLAF 232
            G   L + E+     +P      Y  K+   ++ +   V    +    D+  E++R+  
Sbjct: 205 GGVRDLPLAEMVFDSAMPGPAILHYAAKWDQGSADYAASVRSFDLDGEEDLVLEMKRIGR 264

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
              +     G +R DF       +++ +++N  P +TP + F   A  AG     L+  +
Sbjct: 265 ACWELFNLAGYARIDFRV-AGPGQIYVIDVNPNPCITPDAGFAAAAQRAGLDHAALVQEI 323

Query: 293 VEDA 296
           V DA
Sbjct: 324 VFDA 327


>gi|42794965|gb|AAS45838.1| putative D-alanine:D-alanine ligase [Clostridium difficile]
 gi|42794967|gb|AAS45839.1| putative D-alanine:D-alanine ligase [Clostridium difficile]
          Length = 141

 Score =  130 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 41/137 (29%), Positives = 74/137 (54%), Gaps = 4/137 (2%)

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            +    ++ P  IKP++ GSS GI  I K + + + +    ++ H ++++IE+ +DG E+
Sbjct: 7   AELSKDLTYPLFIKPVRAGSSFGISKIYKKEELQVAVDL--AFEHDNEVIIEENIDGFEV 64

Query: 178 TCGVMGDASLDVTEIAVPK--SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
            C V+G+  L V  +   +    F+ Y  KY+  +S   +PA+I LD  K +Q  A + +
Sbjct: 65  GCAVLGNNDLLVGRVDEIELSKGFFDYTEKYTLKSSKIHMPARIDLDCEKRIQETAKIIY 124

Query: 236 QAIGCRGISRSDFLFDP 252
           + +GC G +R D    P
Sbjct: 125 RTLGCSGFARVDMFLTP 141


>gi|330883773|gb|EGH17922.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. glycinea str.
           race 4]
          Length = 119

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 51/116 (43%), Positives = 67/116 (57%), Gaps = 2/116 (1%)

Query: 28  DAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87
           DAG     IDV       L   K D AF VLHG  GEDG +Q +LE LEIPYT SG+LAS
Sbjct: 3   DAGVDAFGIDVGDDFLQRLVSEKIDRAFIVLHGRGGEDGTMQGLLECLEIPYTGSGVLAS 62

Query: 88  ALSMDKMRSKQVVSSCGVPVCPSILV--NRFTMDSQHLISPPYVIKPLKGGSSLGI 141
           AL+MDK+R+KQV  S G+      ++      + +   +  P ++KP   GSS+G+
Sbjct: 63  ALAMDKLRTKQVWQSLGLATPLHAVLGNESDCICAATELGFPLIVKPAHEGSSIGM 118


>gi|256378297|ref|YP_003101957.1| D-alanine--D-alanine ligase [Actinosynnema mirum DSM 43827]
 gi|255922600|gb|ACU38111.1| D-alanine--D-alanine ligase [Actinosynnema mirum DSM 43827]
          Length = 339

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 64/249 (25%), Positives = 101/249 (40%), Gaps = 26/249 (10%)

Query: 67  LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP 126
             +A+L+ L +PY  +     AL  DK  ++ VV++ GVPV    +V          + P
Sbjct: 96  TYRALLDALGVPYPGNPPDVMALGADKAMTRAVVAAAGVPVPEGRVVTSAD---PCPLPP 152

Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVM--- 182
           P+V+KP+   +S G+ ++         L  + + +   + L+E+YV  G E+ CGV+   
Sbjct: 153 PFVVKPVDADNSDGLTLVHDRADYHAALDAAFACSPRRRALVERYVPPGREVRCGVLVRS 212

Query: 183 -GDASLDVTEIAVPK-------------SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
                L + E  +P                  S   K    +            +   VQ
Sbjct: 213 GVPTPLPLEEYPLPSGVRPRADKLADDGGGSLSLVAKADGRS----WIVDHDDPVTAAVQ 268

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
             A   H+A+GCR  S  DF  DP  R  ++LE  +     P S+   MA  AG    EL
Sbjct: 269 EQALRCHEALGCRDYSLFDFRIDPEGR-PWFLEAGLYCSFAPTSVITTMAGAAGIGLAEL 327

Query: 289 LLWMVEDAS 297
               V  A+
Sbjct: 328 FAEAVTTAA 336


>gi|148711599|gb|ABR02226.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
          Length = 147

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 41/146 (28%), Positives = 70/146 (47%), Gaps = 5/146 (3%)

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
           ++ +  +  P   KP   GSS+GI      + +   L    ++ +  ++L+EQ V+  E+
Sbjct: 4   VEVEEKLIYPVFTKPSNMGSSVGISKSDNQEELRQALRL--AFQYDSRVLVEQGVNAREI 61

Query: 178 TCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
             G++G+  +  T     V    FY Y+ KY     T  +PAKI  D+   +++ A  A 
Sbjct: 62  EVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAF 121

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLE 261
            AIG  G+SR DF +     ++F  E
Sbjct: 122 CAIGGLGLSRCDFFYTDK-GEIFLNE 146


>gi|330814383|ref|YP_004358622.1| D-alanine--D-alanine ligase [Candidatus Pelagibacter sp. IMCC9063]
 gi|327487478|gb|AEA81883.1| D-alanine--D-alanine ligase [Candidatus Pelagibacter sp. IMCC9063]
          Length = 370

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 63/274 (22%), Positives = 114/274 (41%), Gaps = 23/274 (8%)

Query: 39  DRSVGLVLAHLKPDLAFN-VLHGNFGEDGL-VQAILELLEIPYTHSGILASALSMDKMRS 96
             +    LA  KPDL F+ V +  F E  + +   LE   I Y  SG  A     DK R+
Sbjct: 78  SENDLKQLAIRKPDLVFSGVKYFTFNERIIWLNDYLETHGISYIASGREALEYEHDKSRA 137

Query: 97  KQVVSSCGVPVCPSILVNRFTMDSQH--LISPPYVIKPLKGGSSLGI---IVIKKDQSIP 151
           K+++    +               Q    +  P  +KP+ GG S GI    V+   +S  
Sbjct: 138 KEIMQKADIKTADFFTTEPGEYPDQESLPVKFPLFVKPVTGGDSRGIDFKSVVHDFKSFE 197

Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA------SLDVTEIAVPKSD----FYS 201
              +           L+E ++ G E + G++ D+      ++ V EI V K+        
Sbjct: 198 -AKVLDIKMKQKSTSLVETFLSGKEYSVGILQDSFSGTLNAMPV-EIMVDKNINGHCILD 255

Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
           +++K    N   V+ A    +I+ ++  LA  +  A+G + + R D   + L  +  ++E
Sbjct: 256 FDIKK---NDEEVVIAVTDKEIFNQLCNLAKKSFIALGGKSLGRIDIKMNHL-NEPHFIE 311

Query: 262 INVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
            N+ PG++    F         S+ E++L + ++
Sbjct: 312 ANLMPGLSKGYFFRSCFLNLNMSYEEMILLIAKN 345


>gi|21360658|gb|AAM49643.1| D-alanine:D-alanine ligase [Enterococcus faecium]
 gi|21360660|gb|AAM49644.1| D-alanine:D-alanine ligase [Enterococcus faecium]
 gi|21360662|gb|AAM49645.1| D-alanine:D-alanine ligase [Enterococcus faecium]
 gi|21360664|gb|AAM49646.1| D-alanine:D-alanine ligase [Enterococcus faecium]
 gi|21360666|gb|AAM49647.1| D-alanine:D-alanine ligase [Enterococcus faecium]
 gi|21360668|gb|AAM49648.1| D-alanine:D-alanine ligase [Enterococcus faecium]
 gi|21360670|gb|AAM49649.1| D-alanine:D-alanine ligase [Enterococcus faecium]
 gi|21360672|gb|AAM49650.1| D-alanine:D-alanine ligase [Enterococcus faecium]
 gi|21360674|gb|AAM49651.1| D-alanine:D-alanine ligase [Enterococcus faecium]
          Length = 155

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 39/157 (24%), Positives = 76/157 (48%), Gaps = 13/157 (8%)

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKG 135
           L SA +MDK+ +K ++ + GVP  P + V +              +  +  P  +KP   
Sbjct: 1   LTSACAMDKIMTKYILQAAGVPQVPYVPVLKNQWKENPKKVFDQCEGSLLYPMFVKPANM 60

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--A 193
           GSS+GI   +  + +   L  ++++ +  + ++EQ ++  E+   V+G+  +  T     
Sbjct: 61  GSSVGITKAENREELQNAL--ATAYQYDSRAIVEQGIEAREIEVAVLGNEDVRTTLPGEV 118

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
           V    FY YE KY +      +PA++P ++Y++ Q  
Sbjct: 119 VKDVAFYDYEAKYINNKIEMQIPAEVPEEVYQKAQEY 155


>gi|253755099|ref|YP_003028239.1| D-alanine--D-alanine ligase [Streptococcus suis BM407]
 gi|251817563|emb|CAZ55310.1| putative D-alanine--D-alanine ligase [Streptococcus suis BM407]
          Length = 316

 Score =  129 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 54/274 (19%), Positives = 107/274 (39%), Gaps = 20/274 (7%)

Query: 32  KVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFG-----EDGLVQAILELLEIPYTHSGILA 86
           +V+  D      + +     D   N    +FG      +  V A  E   I Y +     
Sbjct: 44  EVTFYDNFEHFKINVQKHHNDFVLNF---DFGYKSRTRNMNVPAFCENYNIKYFNPDPYV 100

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL--ISPPYVIKPLKGGSSLGI--- 141
             L  DK  +++   + GV V  S+LV + +     L  ++ P +IKP     S+GI   
Sbjct: 101 QVLCQDKFMTEKFAENFGVTVPNSLLVFKHSYQKNLLKDLNYPLIIKPNYESESIGITQD 160

Query: 142 IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS---LDVTEIAVPKSD 198
            +++       D +    +   D +L+E+Y++G E+   +  +      +  E+  P+ +
Sbjct: 161 SIVENPGD--ADTIIGKLFKEFDGILVEEYIEGKEVAITIWDNGEEIFFEEVELIFPRLE 218

Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
              Y+   S +     +  K    +  +        ++ +    + R D      + K +
Sbjct: 219 EIKYQAYTSEIKQKIGIEIKKSCYLSDKDIINLKQLYKNLSPNKLIRIDGRI--KNSKFY 276

Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
            +EIN  PG+ P S+ P+     GY +  +L  +
Sbjct: 277 LIEINANPGLYPKSVVPKTFLINGYDYETMLKKL 310


>gi|312115133|ref|YP_004012729.1| hypothetical protein Rvan_2406 [Rhodomicrobium vannielii ATCC
           17100]
 gi|311220262|gb|ADP71630.1| hypothetical protein Rvan_2406 [Rhodomicrobium vannielii ATCC
           17100]
          Length = 341

 Score =  129 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 60/284 (21%), Positives = 112/284 (39%), Gaps = 14/284 (4%)

Query: 20  KACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGL--VQAILELLEI 77
                 L D G++V        + L+ A  + D+ F++ +     +    + ++ E L I
Sbjct: 49  ARVFRTLRDLGYRVRT--ASEPLALLAAKGEADIVFSLYNRMPINNPEVFIPSLCEYLRI 106

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-ILVNRFTMDSQHLISPPYVIKPLKGG 136
           PY  +     AL+ DK  +K    + G+PV    +  +   + +      PY +K   G 
Sbjct: 107 PYVGARPNIRALAEDKWLAKLAAKAIGIPVSEGAVYADEAALATPPGFPGPYFVKQRFGA 166

Query: 137 SSLGIIVIK-KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV- 194
           +S GI     +D       + +     G  +L+E Y  GI++T   +G A+  +    V 
Sbjct: 167 ASEGISAESIQDDWAGAARVAAKLMARGMAVLVEGYAPGIDITVPSLGSANGPLVLGVVR 226

Query: 195 ----PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
                     + +LK S      +  A     +  +++  A    +A G     R D+ F
Sbjct: 227 PRSDKAGGIITEDLKRSDPLGYEIFEAG---RVEDDLRADAATLWRATGPMDYFRMDYRF 283

Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           DP + +  +LE N+   +         AA  G S  ++L  ++E
Sbjct: 284 DPETGRRVFLEFNICCHIGRSGSICLAAAQHGLSQADVLGHVIE 327


>gi|159029118|emb|CAO90107.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 363

 Score =  129 bits (325), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 78/275 (28%), Positives = 128/275 (46%), Gaps = 28/275 (10%)

Query: 43  GLVLAHLKPDLAFNVLHGNFGEDGLVQ--AILELLEIPYTHSGILASALSMDKMRSKQVV 100
             VL  L+ D+    +   F   G+ Q  A+ +LL+IPY  +     AL+ DK ++K VV
Sbjct: 75  VAVLIQLQIDVMVPQM---FCLPGMTQYRALFDLLKIPYVGNSAELMALAADKAKAKAVV 131

Query: 101 SSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160
           S+ GV V    +++R    S   +S P +IKP    +SLG+ ++ +      D   ++++
Sbjct: 132 SAAGVTVPAGKVLHRGDCLS---VSRPSIIKPNHSDNSLGLSLVTETTDG--DAAFATAF 186

Query: 161 NHGDQLLIEQYVD-GIELTCGVMGDA----SLDVTEIAVPKSDF----YSYELKYSSLNS 211
            + D++L+E++++ G E+ CGV+  A     L + E AV         Y+ +LK S   S
Sbjct: 187 EYADEVLVEEFIELGREVRCGVIVQAGELVCLPLEEYAVNPETHPIRTYADKLKQSQDGS 246

Query: 212 --------THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
                   T          + + V  +A   H A+GCR  S  DF  DP   + ++LE  
Sbjct: 247 LDCAAKEKTKAWIVDPRDPVTQRVWAIAKQCHVALGCRHYSLFDFRIDPH-GQPWFLEAG 305

Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           +       S+   MA  AG S  +L   MV+ A  
Sbjct: 306 LYCSFAQKSVISMMAQAAGISLTDLFQNMVQMAVA 340


>gi|317154409|ref|YP_004122457.1| D-alanine--D-alanine ligase domain-containing protein
           [Desulfovibrio aespoeensis Aspo-2]
 gi|316944660|gb|ADU63711.1| D-alanine--D-alanine ligase domain protein [Desulfovibrio
           aespoeensis Aspo-2]
          Length = 337

 Score =  128 bits (323), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 53/304 (17%), Positives = 120/304 (39%), Gaps = 32/304 (10%)

Query: 20  KACASALEDAGFKVSQIDVDRSVGL---VLAHLKPDLAFNVLHGNFGEDGL---VQAILE 73
           +  +  L + G+ V ++++   +G     L  ++P + FN++      D L      I  
Sbjct: 28  RFVSRVLRELGWSVVEVELGSDLGEAVSTLQGIRPGVVFNLVESIMDSDELANLTPVIFR 87

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPP--YVIK 131
            L +P+T +      L+ DK+ +K+ + S G+P    +     T   +     P  Y++K
Sbjct: 88  KLGLPFTGADSSVLFLTNDKLAAKRHMQSVGLPTPAGV---DETGLKRGRFPGPGRYIVK 144

Query: 132 PLKGGSSLG-----IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186
                +SLG     ++ +K    +   +  +     G   L E+++DG E +  ++  A 
Sbjct: 145 SRCEHASLGLDETSVVNVKTADELLAAMA-ARRHKLGGSCLAERFIDGREFSVSLLETAH 203

Query: 187 LDVTEIAVPKSDFYS--------YELKYSSLNSTHVLPAK------IPLDIYKEVQRLAF 232
                +   +  F +        Y+ K+   +   +   +          +   +++ A 
Sbjct: 204 HASVVLGSAEIVFRADMPVKIVGYDAKWEEGSDADLSTVRGFAFRKAEPGLAARLEQTAR 263

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
                +G  G +R DF  D     +  +++N  P ++  + F   A  +G    +++  +
Sbjct: 264 DCWDEMGLSGYARVDFRVDA-EGALSIIDVNANPCLSENAGFMATARESGRKPSDVISAI 322

Query: 293 VEDA 296
           V+ A
Sbjct: 323 VDGA 326


>gi|167522641|ref|XP_001745658.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163776007|gb|EDQ89629.1| predicted protein [Monosiga brevicollis MX1]
          Length = 1210

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 55/293 (18%), Positives = 99/293 (33%), Gaps = 38/293 (12%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGE----DGLVQAILELLEIPYTHSGILASALSM 91
           +D   ++        P   FN+    +      +  + A++++  IPYT +G +   L  
Sbjct: 71  LDTHATLLERFKSQPPAFIFNLCDEGYNNVNEWEPYLPALMDMHGIPYTGTGAIGLTLCR 130

Query: 92  DKMRSKQVVSSCGVPVCPSILVNR-----FTMDSQHLISPPYVIKPLKGGSSLGII---V 143
           DK     V  +  + V  S +              H+ + P ++KP  G  S GI    +
Sbjct: 131 DKWLVDSVAKALNIAVPFSHVFEPNHQTVNEFIETHVFTFPVIVKPRCGDGSTGITSTCI 190

Query: 144 IKKDQSIPLDLLQSSSWNH--GDQLLIEQYVDGIELTCGVMGDA-----------SLDVT 190
               Q +   L             +L++Q++ G E+T   +G+             LD T
Sbjct: 191 CNSTQELAAHLEDLGRQEELASLAMLVQQFLAGREITVACLGNPDSGDFRVLPILELDYT 250

Query: 191 EIAVPKSDFYSYELKYS-----SLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
           ++         Y+ K            H+  A+        ++        A+  +  +R
Sbjct: 251 KLPPDAPKIQLYDAKRGMAPEFWEQVAHIH-AQFDDATQALIEDHCAKIFDALSLQDYAR 309

Query: 246 SDFLFDPLSRKVFWLEINVQP--GMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            DF FD        L++N     G      F      AG  +  LL  +V  A
Sbjct: 310 IDFRFDDS-GTPHLLDVNPNCWIG----GKFRRAGQLAGLEWPHLLESVVRAA 357


>gi|148555411|ref|YP_001262993.1| phosphoribosylglycinamide synthetase [Sphingomonas wittichii RW1]
 gi|148500601|gb|ABQ68855.1| phosphoribosylglycinamide synthetase [Sphingomonas wittichii RW1]
          Length = 344

 Score =  127 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 55/284 (19%), Positives = 108/284 (38%), Gaps = 15/284 (5%)

Query: 20  KACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLH--GNFGEDGLVQAILELLEI 77
           +   + LE  G  +   D   ++    A    D  F +L+  G    + L+  + E   I
Sbjct: 45  REMRAVLEGMGLDLHLADGYEALF---AAPDVDFVFPLLNRGGFLNSEMLLPLLCERRGI 101

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPP--YVIKPLKG 135
           PY  +  +   LS DK  +K+V  + G+P  P  L  R       L  P   +V+KP   
Sbjct: 102 PYLGASPILRGLSDDKHLAKRVAVARGLPTAPWALFRRGAPIDLSLCPPAARHVVKPNAS 161

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM----GDASLDVTE 191
            +S GI      + +   + +     H   +++E ++ G ++   V+        L V  
Sbjct: 162 SASWGISAAHDLEDVRAAVARLHKEGHD--VIVEPFIPGHDIEVSVITLDGEPFILPVQI 219

Query: 192 IAVPKSDFY-SYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGCRGISRSDFL 249
           +      +  +Y  K + ++        +  D +  E  R A    +        R +F 
Sbjct: 220 VEQDDPGYLRTYLEKRNLIDDQAYAIRPLDDDRLRIEATRQAIEMMKEFLPFDYGRFEFR 279

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            +  +  + ++E+N+   +         AA  G+S  EL+  ++
Sbjct: 280 LNAATGALSFMEVNLNCNLWSRKTIAMAAAQIGWSHAELIETIL 323


>gi|116748159|ref|YP_844846.1| D-alanine--D-alanine ligase domain-containing protein
           [Syntrophobacter fumaroxidans MPOB]
 gi|116697223|gb|ABK16411.1| D-alanine--D-alanine ligase domain protein [Syntrophobacter
           fumaroxidans MPOB]
          Length = 357

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 60/317 (18%), Positives = 122/317 (38%), Gaps = 33/317 (10%)

Query: 11  EREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL---KPDLAFNVLHGNFGEDGL 67
           E +V L    A ++AL   G     + ++  +   +  L   +P L FN++    G    
Sbjct: 44  EADV-LVQAGAVSTALAALGHLPRLLALNMDLQAAIDELLGIRPRLVFNLVESINGSGRF 102

Query: 68  V---QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI 124
           +    +ILE L IP+T +   A   + +K+ +K+++   G+   P               
Sbjct: 103 IHFAPSILEHLRIPFTGARADAILSTSNKLLAKRLLDRAGIRTPPWFEKPGGARRHPGS- 161

Query: 125 SPP---YVIKPLKGGSSLG-----IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
             P    ++K +   +S+G     ++  +    +   +LQ  +   G +   E +++G E
Sbjct: 162 PFPAGTCLVKSVWEHASIGIDENSLVQARDAGDLMEPILQREAML-GGEWFAESFIEGRE 220

Query: 177 LTCGVMGD----ASLDVTEI-----AVPKSDFYSYELKYSSLNSTHVLP------AKIPL 221
               ++ +      L   EI              Y  K+ + +            A    
Sbjct: 221 FNISLIEEAGRVRVLPPAEILFRGFPSDTPKIVGYRAKWETGSFEFRNTPRTFEFAAEDE 280

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYA 281
            + + +  ++    +  G  G +R DF  D +    + LE+N  P ++P + F   AA A
Sbjct: 281 GLLRRLSEISMNCWELFGLNGYARVDFRVDGVE-VPWVLEVNANPCLSPDAGFIAAAARA 339

Query: 282 GYSFRELLLWMVEDASC 298
           G S+ +++  +   A C
Sbjct: 340 GLSYTDVIDRIASGARC 356


>gi|58698113|ref|ZP_00373036.1| D-alanine-D-alanine ligase [Wolbachia endosymbiont of Drosophila
           ananassae]
 gi|58535359|gb|EAL59435.1| D-alanine-D-alanine ligase [Wolbachia endosymbiont of Drosophila
           ananassae]
          Length = 190

 Score =  126 bits (317), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 44/114 (38%), Positives = 64/114 (56%), Gaps = 1/114 (0%)

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
                 +      + FY YE KY+   + H+ PAKIP +IYK     A   HQ +GC+ I
Sbjct: 61  TQHFPASYKKFHFNKFYDYEAKYTDGFAEHIFPAKIPDNIYKMTLEHALKIHQFLGCKTI 120

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA-YAGYSFRELLLWMVEDA 296
           SRSDF ++P +  +  LEIN  PG T +S+ PE+A    G +F EL+  ++ED+
Sbjct: 121 SRSDFRYNPKNNTLKMLEINTHPGFTELSLVPEIAKLAKGINFNELVKIIIEDS 174


>gi|322382668|ref|ZP_08056532.1| D-alanine-D-alanine ligase-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
 gi|321153366|gb|EFX45789.1| D-alanine-D-alanine ligase-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
          Length = 130

 Score =  126 bits (316), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 31/98 (31%), Positives = 50/98 (51%)

Query: 49  LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
            + D  F+VLHG  GEDG +Q + EL  IPY    + +SA+ MDK  +  V  + G    
Sbjct: 33  QRIDAVFSVLHGKSGEDGAIQGLFELSGIPYVGCDVQSSAVCMDKSLTYIVAKNAGFGTP 92

Query: 109 PSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
             +++N       + ++ P  +KP + GSS G+  +  
Sbjct: 93  EFLILNHGDKPDSNTLTYPVFVKPARSGSSFGVNKVNN 130


>gi|149192572|ref|ZP_01870736.1| D-alanylalanine synthetase [Vibrio shilonii AK1]
 gi|148833591|gb|EDL50664.1| D-alanylalanine synthetase [Vibrio shilonii AK1]
          Length = 117

 Score =  125 bits (315), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 35/111 (31%), Positives = 55/111 (49%), Gaps = 3/111 (2%)

Query: 188 DVTEIAVPKSDFYSYELKYSSLN--STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
              EI  P   FY+Y+ KYSS +  +T V  + +  +    +   A      +  R +SR
Sbjct: 6   KPGEIIAPDGAFYTYDEKYSSDSHSTTTVEASDLTDEQLNIIHTSAVKVFTQMKLRHLSR 65

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            DF       K++  E+N  PGMTP+S+FP+M  ++G  F E L   +E +
Sbjct: 66  IDFFLTE-DNKIYLNEVNTFPGMTPISMFPKMVEHSGLEFSEFLSDCIESS 115


>gi|282896743|ref|ZP_06304751.1| D-alanylalanine synthetase [Raphidiopsis brookii D9]
 gi|281198461|gb|EFA73349.1| D-alanylalanine synthetase [Raphidiopsis brookii D9]
          Length = 391

 Score =  125 bits (314), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 70/343 (20%), Positives = 124/343 (36%), Gaps = 51/343 (14%)

Query: 1   MAVLMGGISSEREVSL-------SS-------GKACASALEDAGFK-VSQIDVDRSVGLV 45
           + V+ GG S+ +E S+        S        +  A AL   GF  V  +  D ++   
Sbjct: 31  IVVIHGGDSN-KEGSVIYKTHNPRSRKTYEQVAQDIAKALMTIGFDHVFVMADDMTLPQR 89

Query: 46  LAHLKPDLAFNVLHGNFGEDG--LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103
           L      LA+    G  G +      A+LE+L IPY     L S++   K   K+ + + 
Sbjct: 90  LKQENIHLAWLNTGGVQGYNSVCHTPALLEMLGIPYVGHNPLNSSILDQKHIFKRELQTW 149

Query: 104 GVPVCPSI-------LVNRFTMDSQHLISP----PYVIKPLKGGSSLGIIVIKKDQSIPL 152
           G+   P +       L +    ++  +  P    P+V+KP+ G +SL I   K  + +  
Sbjct: 150 GINTAPFVTWHPAQGLFDHHRSENFAITFPNYKGPFVVKPVSGRASLNIHFAKNIEDLSA 209

Query: 153 DLLQSSSWNHGDQLLIEQYVDGIELTCGVMG--------------DASLDVTE-IAVPKS 197
            +  +         LIE Y  G E    V G                +    E I  P  
Sbjct: 210 AVA-NIHHTTHSTALIETYFPGREFCVSVCGYVIHINKTFYKKTQPFAFSTIERILEPGE 268

Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
             ++   K         L      ++ + +  +A   +Q+     + R D   D  +  +
Sbjct: 269 HIFTSMDKKPITTERIHLLDDHESELKQNLIEIAQKLYQSFHLNTLVRVDLRSDE-NGIL 327

Query: 258 FWLEINVQPGM-----TPVSIFPEMAAYAGYSFRELLLWMVED 295
             LE N +P +        S+  E       ++ +L+L ++ D
Sbjct: 328 HVLEANPKPDLKRPNNIATSLVAEGLHEQRMNYEDLILSLLSD 370


>gi|119486250|ref|ZP_01620309.1| D-alanine--D-alanine ligase [Lyngbya sp. PCC 8106]
 gi|119456463|gb|EAW37593.1| D-alanine--D-alanine ligase [Lyngbya sp. PCC 8106]
          Length = 291

 Score =  125 bits (314), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 51/242 (21%), Positives = 100/242 (41%), Gaps = 22/242 (9%)

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKP 132
           +LL +    S    +AL+ +K +++ VV++ GV V  +  +          + PP+++KP
Sbjct: 35  DLLGLSVVGSPSHCTALATNKAQTRSVVAASGVRVAKAQQLRPGDT---LTMQPPFIVKP 91

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLD 188
               +SLG+ +++    I   L     +   + LL+E Y+ G E+   V+        L 
Sbjct: 92  NSEDNSLGVTLVQNPDQITEALRI--GFELDEILLVEDYIPGREIRVAVVEREGKLCVLP 149

Query: 189 VTEIAVPKSDFYSYELKYSSLNS-------------THVLPAKIPLDIYKEVQRLAFLAH 235
           + E    +            L S               V PA +  ++++++   A  AH
Sbjct: 150 MIEYLFTEEHPIRTVQDKLHLQSDGMPEKQPEKPVAKPVCPANVAPELFEKLANAAKNAH 209

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
            A+GCR  S  DF     + + + LE  +      +S+   M    G +  ++ L +  +
Sbjct: 210 IALGCRDYSLYDFRVHAETHEPYMLEAGLFWSFGKISMISRMLIVDGQNLEDVALELWRE 269

Query: 296 AS 297
           A+
Sbjct: 270 AA 271


>gi|116327785|ref|YP_797505.1| D-alanine--D-alanine ligase [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116331556|ref|YP_801274.1| D-alanine--D-alanine ligase [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
 gi|116120529|gb|ABJ78572.1| D-alanine--D-alanine ligase [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116125245|gb|ABJ76516.1| D-alanine--D-alanine ligase [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
          Length = 353

 Score =  124 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 73/286 (25%), Positives = 121/286 (42%), Gaps = 25/286 (8%)

Query: 11  EREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------LKPDLAFNVLHGNFGE 64
           E E S  S       L + G +V  +     +   L H       K  + F+++ G    
Sbjct: 28  EWESS-KSVDVILELLSEVGERVEFVATPNELLEKLNHYSDLDFTKRPVLFHLMEGFRSR 86

Query: 65  DG--LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN-RFTMDSQ 121
           +   L+ A  EL   P+T S + +  +S+DK  +K    S G+P+ P  L+         
Sbjct: 87  NRESLIPAAAELFGFPHTGSDVYSQNVSLDKNLTKIFAQSMGIPIVPGFLIRFETDFTVP 146

Query: 122 HLISPPYVIKPLKGGSSLGI---IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
              S P  +KP   GSS GI    +I  ++ +   L   ++       L+E+Y+ GIE T
Sbjct: 147 KEFSFPGFLKPSGEGSSFGIGEESIIHDEKDLRFKLSSRTAEFF--PYLLEEYLTGIEYT 204

Query: 179 CGVMGDASLDVTEIA----VPKSDFYSYELKYSSLNSTHVLPAKI----PLDIYKEVQRL 230
             V+G   +     +    V + D    E+      S  V+P  +    P  +   +Q  
Sbjct: 205 ISVIGSNVVGYRVSSAGRLVLRDDLKVEEVYGEKTKSKSVMPETLVFDCPSGLELFLQEQ 264

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV-SIFP 275
           + L   ++G  G +R D+  D L    ++LEIN+ PG++P  S FP
Sbjct: 265 SRLFCSSLGTSGPARLDWKLDSLGN-PYFLEINLTPGLSPFYSTFP 309


>gi|330884029|gb|EGH18178.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. glycinea
          str. race 4]
          Length = 91

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 47/85 (55%), Positives = 53/85 (62%)

Query: 1  MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
          +AVL GG S+ER VSL+SG A   AL DAG     IDV       L   K D AF VLHG
Sbjct: 6  VAVLFGGKSAERAVSLNSGNAVLKALLDAGVDAFGIDVGDDFLQRLVSEKIDRAFIVLHG 65

Query: 61 NFGEDGLVQAILELLEIPYTHSGIL 85
            GEDG +Q +LE LEIPYT SG+L
Sbjct: 66 RGGEDGTMQGLLECLEIPYTGSGVL 90


>gi|110598072|ref|ZP_01386351.1| conserved hypothetical protein, conserved [Chlorobium ferrooxidans
           DSM 13031]
 gi|110340331|gb|EAT58825.1| conserved hypothetical protein, conserved [Chlorobium ferrooxidans
           DSM 13031]
          Length = 489

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 52/259 (20%), Positives = 98/259 (37%), Gaps = 26/259 (10%)

Query: 29  AGFKVSQIDVDRSVGLV----LAHLKPDLAFNVLHGNFGEDGL----VQAILELLEIPYT 80
            G  V   D+ ++  +     L     DL  N+  G+F  D      VQ  LE    P+T
Sbjct: 31  EGHDVEMADIHKATAVQQVRSLIQQDFDLFINLCDGSFDSDCAGIEVVQ-TLEYFNAPFT 89

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVC--PSILVNRFTMDSQHLISPPYVIKPLKGGSS 138
            +       +  +   K+V  S G+       ++      ++   +  P ++K     +S
Sbjct: 90  GASSDFYDPT--REDMKRVARSFGIDTPLHRFVVTEADIKEAAENLRFPLIVKHPNSYAS 147

Query: 139 LGIIVIKKDQSIPLDLLQSSSW--NHGDQLLIEQYVDGIELTCGVMGDA-------SLDV 189
           +G+         P      +        + L+E++V+G E T  V  +A       +   
Sbjct: 148 IGMTK-TSRTETPEAFKVEAERIVREFGEALVEEFVEGREFTVLVAENAEDAANPVAFPA 206

Query: 190 TEIAVPKSD-FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
            E   P+ + F  ++LK+S     + +P +   D+ + ++ ++      +   G  R D 
Sbjct: 207 VEFVFPEGESFKHFDLKWSDYEDMNCIPVE-DPDLDRRLRTISAQLFTGLNGSGYGRCDI 265

Query: 249 LFDPLSRKVFWLEINVQPG 267
             D   R +F LEIN   G
Sbjct: 266 RMDGEGR-LFMLEINPNCG 283


>gi|92111858|gb|ABE73673.1| D-alanine:D-alanine ligase [Streptococcus vestibularis]
          Length = 152

 Score =  122 bits (308), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 36/154 (23%), Positives = 72/154 (46%), Gaps = 10/154 (6%)

Query: 100 VSSCGVPVCPSILVNRFT------MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153
           +   GVP     +            ++   ++ P  +KP   GSS+GI  ++ +  +   
Sbjct: 1   LEVAGVPQVAYTVFIEGEDLESAVAETLEKLTFPVFVKPANMGSSVGISKVENEAELRSA 60

Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNS 211
           +  +    +  ++LIEQ V   E+  G++G+ ++  T+    V    FY Y+ KY     
Sbjct: 61  IDLAL--KYDSRILIEQGVVAREIEVGILGNTTVKTTDPGEVVKDVAFYDYQAKYIDNKI 118

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
           T  +PA +P ++  +++  A  A +A+G  G++R
Sbjct: 119 TMDIPAHVPAEVMAQMRAYAAKAFRALGGCGLAR 152


>gi|170077261|ref|YP_001733899.1| hypothetical protein SYNPCC7002_A0638 [Synechococcus sp. PCC 7002]
 gi|169884930|gb|ACA98643.1| hypothetical protein SYNPCC7002_A0638 [Synechococcus sp. PCC 7002]
          Length = 384

 Score =  122 bits (307), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 66/312 (21%), Positives = 120/312 (38%), Gaps = 39/312 (12%)

Query: 19  GKACASALEDAGFK-VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGED--GLVQAILELL 75
               A+ALED GF+ V  +  D ++G  L   +  LA+    G  G +      AILE+L
Sbjct: 55  AHDIAAALEDLGFQHVFVLPDDATLGDRLRKHQIHLAWLNTGGVQGYNPVCHTPAILEML 114

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN----RFTMDSQHLISPP---- 127
            +PY     L S++  +K   K+ +   G P  P ++ +    +FT              
Sbjct: 115 GVPYIGHNPLNSSILDNKHSFKRELQGLGFPTAPFMIWHPAQGKFTAKDNARFQQTFGDY 174

Query: 128 ---YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG- 183
              +++KP+ G +SL I  + + Q +   +       H    LIE ++ G E    V G 
Sbjct: 175 QGSFLVKPVSGRASLNIHFVDQPQDLGEAIANIHQQTHNT-ALIEPFLTGREFCVSVCGY 233

Query: 184 -------------DASLDVTE--IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
                          +  + E  +   +  F S + K  +      L         K++ 
Sbjct: 234 VRHRQGQFEKLESPFTFSILERLLEADEKIFTSMDKKAITGQRIRFL--DDSDPAKKKLA 291

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP-----VSIFPEMAAYAGY 283
           +LA   +       + R D   D +   +  LE N +P +        S+  +  +  G 
Sbjct: 292 KLAQQVYWEFSLNALIRIDARMDAMGN-IQILEANPKPDLKRPAANVTSLVAQGLSEEGM 350

Query: 284 SFRELLLWMVED 295
           ++ +L+L ++ D
Sbjct: 351 TYEDLILSLISD 362


>gi|92111860|gb|ABE73674.1| D-alanine:D-alanine ligase [Streptococcus vestibularis]
          Length = 152

 Score =  122 bits (306), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 36/154 (23%), Positives = 71/154 (46%), Gaps = 10/154 (6%)

Query: 100 VSSCGVPVCPSILVNRFT------MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153
           +   GVP     +            ++   ++ P  +KP   GSS+GI   + +  +   
Sbjct: 1   LEVAGVPQVAYTVFIEGEDLESAVAETLEKLTFPVFVKPANMGSSVGISKAENEAELRAA 60

Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNS 211
           +  +    +  ++LIEQ V   E+  G++G+ ++  T+    V    FY Y+ KY     
Sbjct: 61  IDLAL--KYDSRILIEQGVVAREIEVGILGNTTVKTTDPGEVVKDVAFYDYQAKYIDNKI 118

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
           T  +PA +P ++  +++  A  A +A+G  G++R
Sbjct: 119 TMDIPAHVPAEVMAQMRAYAAKAFRALGGCGLAR 152


>gi|92111882|gb|ABE73685.1| D-alanine:D-alanine ligase [Streptococcus salivarius]
          Length = 152

 Score =  121 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 36/154 (23%), Positives = 72/154 (46%), Gaps = 10/154 (6%)

Query: 100 VSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153
           +   GVP     +      +     ++   ++ P  +KP   GSS+GI   + +  +   
Sbjct: 1   LEVAGVPQVAYTVYIEGEDLEAAVAETLEKLTFPVFVKPANMGSSVGISKAENEAELRAA 60

Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNS 211
           +  +    +  ++LIEQ V   E+  G++G+ ++  T+    V    FY Y+ KY     
Sbjct: 61  IDLAL--KYDSRILIEQGVVAREIEVGILGNTTVKTTDPGEVVKDVAFYDYQAKYIDNKI 118

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
           T  +PA +P ++  +++  A  A +A+G  G++R
Sbjct: 119 TMDIPAHMPAEVMTQMRAYAAKAFRALGGCGLAR 152


>gi|189501741|ref|YP_001957458.1| hypothetical protein Aasi_0291 [Candidatus Amoebophilus asiaticus
           5a2]
 gi|189497182|gb|ACE05729.1| hypothetical protein Aasi_0291 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 475

 Score =  121 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 55/227 (24%), Positives = 88/227 (38%), Gaps = 67/227 (29%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           + + +GG S ERE+S + G+     L+   F+   I VD     +               
Sbjct: 7   VGIFLGGSSREREISFAGGRTVYDNLDKGLFEPIPIFVDSFNNFIQLDWRYLYQGSIRDF 66

Query: 46  ------------------LAHLKPD-----------------------LAFNVLHGNFGE 64
                             L +L PD                        AF  LHG  GE
Sbjct: 67  YPPSDMLSLTKFQIYMESLGNLSPDQLSQYMARVGKKVTAEQLKGMIDFAFLSLHGPCGE 126

Query: 65  DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM------ 118
           DG +Q +LE  +IPY+ SGIL +A+ +DK+  K+ +   G  V P  +++R T       
Sbjct: 127 DGSIQGLLEWYKIPYSGSGILGTAVGIDKIVQKKWMQQAGFLVTPYSIIDRNTWQKTTNK 186

Query: 119 -----DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160
                +  H +  P VIK  + GSS+G+ ++ +           +S+
Sbjct: 187 DALFEELIHTLGLPLVIKSPRQGSSIGVNIVYEKDFEAFTKAIHASF 233



 Score =  100 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 35/157 (22%), Positives = 67/157 (42%), Gaps = 10/157 (6%)

Query: 149 SIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA-----SLDVTEIAVPKSDFYSYE 203
             PLDL+   S    + +L+E ++ G E +C V+ +A     +L  TE+ +     + Y 
Sbjct: 294 ESPLDLV---SLQGEESVLVESFITGREFSCIVLQEAGNEPVALPPTEM-LKGDLHFDYR 349

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            KY         P  +PL     ++       +++  +  +R D +F      ++  + N
Sbjct: 350 AKYLPGLVRKQTPMTLPLAQLNTIKEACVQLFESLNFQVYARIDGIFS-SDNSIYLNDPN 408

Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
              GM P S     AA  G +  +LL +++ ++   R
Sbjct: 409 TTAGMNPSSFLFHQAAEIGLNPSQLLTFLIRNSLAAR 445


>gi|183585290|gb|ACC63959.1| D-alanine-D-alanine ligase [Clostridium perfringens]
          Length = 131

 Score =  121 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 37/137 (27%), Positives = 71/137 (51%), Gaps = 6/137 (4%)

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
            GGSS+   +++  +++   +L++    +  +++IE+Y+ G E+TC ++    L V  I 
Sbjct: 1   NGGSSVATTLVESKEAVKDAVLEAL--KYDTEVMIEEYIKGDEITCPIIDGKMLPVLAIK 58

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
            PK  F+    KY    +   +  K+  D++KEV+++A   ++ + C   +R D L    
Sbjct: 59  -PKGKFFDIASKYEDGGADEFI-VKLNEDLHKEVEKMALETYKLLKCDVYARVDMLVR-- 114

Query: 254 SRKVFWLEINVQPGMTP 270
               + LE+N  PGMT 
Sbjct: 115 DNVPYVLEVNTLPGMTK 131


>gi|92111862|gb|ABE73675.1| D-alanine:D-alanine ligase [Streptococcus vestibularis]
          Length = 152

 Score =  121 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 36/154 (23%), Positives = 72/154 (46%), Gaps = 10/154 (6%)

Query: 100 VSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153
           +   GVP     +      +     ++   ++ P  +KP   GSS+GI   + +  +   
Sbjct: 1   LEVAGVPQVAYTVYIEGEDLEAAVAETLEKLTFPVFVKPANMGSSVGISKAENEAELHAA 60

Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNS 211
           +  +    +  ++LIEQ V   E+  G++G+ ++  T+    V    FY Y+ KY     
Sbjct: 61  IDLAL--KYDSRILIEQGVVAREIEVGILGNTTVKTTDPGEVVKDVAFYDYQAKYIDNKI 118

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
           T  +PA +P ++  +++  A  A +A+G  G++R
Sbjct: 119 TMDIPAHVPAEVMTQMRAYAAKAFRALGGCGLAR 152


>gi|183585304|gb|ACC63966.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|183585306|gb|ACC63967.1| D-alanine-D-alanine ligase [Clostridium perfringens]
          Length = 131

 Score =  121 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 36/137 (26%), Positives = 71/137 (51%), Gaps = 6/137 (4%)

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
            GGSS+   +++  +++   +L++    +  +++IE+Y+ G E+TC ++    L V  I 
Sbjct: 1   NGGSSVATTLVESKEAVKDAVLEAL--KYDTEVMIEEYIKGDEITCPIIDGKMLPVLAIK 58

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
            PK  F+    KY    +   +  ++  D++KEV+++A   ++ + C   +R D L    
Sbjct: 59  -PKGKFFDIASKYEDGGADEFI-VELNEDLHKEVEKMALETYKLLKCDVYARVDMLVR-- 114

Query: 254 SRKVFWLEINVQPGMTP 270
               + LE+N  PGMT 
Sbjct: 115 DNIPYVLEVNTLPGMTK 131


>gi|183585300|gb|ACC63964.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|183585302|gb|ACC63965.1| D-alanine-D-alanine ligase [Clostridium perfringens]
          Length = 131

 Score =  121 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 36/137 (26%), Positives = 71/137 (51%), Gaps = 6/137 (4%)

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
            GGSS+   +++  +++   +L++    +  +++IE+Y+ G E+TC ++    L V  I 
Sbjct: 1   NGGSSVATTLVESKEAVKDAVLEAL--KYDTEVMIEEYIKGDEITCPIIDGKMLPVLAIK 58

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
            PK  F+    KY    +   +  ++  D++KEV+++A   ++ + C   +R D L    
Sbjct: 59  -PKGKFFDIASKYEDGGADEFI-VELNEDLHKEVEKMALETYKLLKCDVYARVDMLV--K 114

Query: 254 SRKVFWLEINVQPGMTP 270
               + LE+N  PGMT 
Sbjct: 115 DNIPYVLEVNTLPGMTK 131


>gi|92111864|gb|ABE73676.1| D-alanine:D-alanine ligase [Streptococcus vestibularis]
          Length = 152

 Score =  121 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 36/154 (23%), Positives = 72/154 (46%), Gaps = 10/154 (6%)

Query: 100 VSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153
           +   GVP     +      +     ++   ++ P  +KP   GSS+GI   + +  +   
Sbjct: 1   LEVAGVPQVAYTVYIEGEDLEAAVAETLEKLTFPVFVKPANMGSSVGISKAENEAELRAA 60

Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNS 211
           +  +    +  ++LIEQ V   E+  G++G+ ++  T+    V    FY Y+ KY     
Sbjct: 61  IDLAL--KYDSRILIEQGVVAREIEVGILGNTTVKTTDPGEVVKDVAFYDYQAKYIDNKI 118

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
           T  +PA +P ++  +++  A  A +A+G  G++R
Sbjct: 119 TMDIPAHVPAEVMAQMRAYAAKAFRALGGCGLAR 152


>gi|92111850|gb|ABE73669.1| D-alanine:D-alanine ligase [Streptococcus salivarius]
          Length = 152

 Score =  121 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 36/154 (23%), Positives = 70/154 (45%), Gaps = 10/154 (6%)

Query: 100 VSSCGVPVCPSILVNRFT------MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153
           +   GVP     +            ++   ++ P  +KP   GSS+GI   + +  +   
Sbjct: 1   LEVAGVPQVAYTVFIEGEDLEAAVAETLEKLTFPVFVKPANMGSSVGISKAENEAELRAA 60

Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNS 211
           +  +    +  ++LIEQ V   E+  G++G+ ++  T     V    FY Y+ KY     
Sbjct: 61  IDLAL--KYDSRILIEQGVVAREIEVGILGNTTVKTTNPGEVVKDVAFYDYQAKYIDNKI 118

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
           T  +PA +P ++  +++  A  A +A+G  G++R
Sbjct: 119 TMDIPAHVPAEVMTQMRAYAAKAFRALGGCGLAR 152


>gi|92111826|gb|ABE73657.1| D-alanine:D-alanine ligase [Streptococcus salivarius]
          Length = 152

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 36/154 (23%), Positives = 71/154 (46%), Gaps = 10/154 (6%)

Query: 100 VSSCGVPVCPSILVNRFT------MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153
           +   GVP     +            ++   ++ P  +KP   GSS+GI   + +  +   
Sbjct: 1   LEVAGVPQVAYTVFIEGEDLEVAVAETLEKLTFPVFVKPANMGSSVGISKAENEAELRAA 60

Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNS 211
           +  +    +  ++LIEQ V   E+  G++G+ ++  T+    V    FY Y+ KY     
Sbjct: 61  IDLAL--KYDSRILIEQGVVAREIEVGILGNTTVKTTDPGEVVKDVAFYDYQAKYIDNKI 118

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
           T  +PA +P ++  +++  A  A +A+G  G++R
Sbjct: 119 TMDIPAHVPAEVMTQMRAYAAKAFRALGGCGLAR 152


>gi|92111832|gb|ABE73660.1| D-alanine:D-alanine ligase [Streptococcus vestibularis]
          Length = 152

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 36/154 (23%), Positives = 71/154 (46%), Gaps = 10/154 (6%)

Query: 100 VSSCGVPVCPSILVNRFT------MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153
           +   GVP     +            ++   ++ P  +KP   GSS+GI   + +  +   
Sbjct: 1   LEVAGVPQVAYTVFIEGEDLESAVAETLEKLTFPVFVKPANMGSSVGISKAENEAELRAA 60

Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNS 211
           +  +    +  ++LIEQ V   E+  G++G+ ++  T+    V    FY Y+ KY     
Sbjct: 61  IDLAL--KYDSRILIEQGVVAREIEVGILGNTNVKTTDPGEVVKDVAFYDYQAKYIDNKI 118

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
           T  +PA +P ++  +++  A  A +A+G  G++R
Sbjct: 119 TMDIPAHVPAEVMTQMRAYAAKAFRALGGCGLAR 152


>gi|92111872|gb|ABE73680.1| D-alanine:D-alanine ligase [Streptococcus salivarius]
          Length = 152

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 36/154 (23%), Positives = 72/154 (46%), Gaps = 10/154 (6%)

Query: 100 VSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153
           +   GVP     +      +     ++   ++ P  +KP   GSS+GI   + +  +   
Sbjct: 1   LEVAGVPQVAYTVYIEGEDLEAAVAETLEKLTFPVFVKPANMGSSVGISKAENEAELRAA 60

Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNS 211
           +  +    +  ++LIEQ V   E+  G++G+ ++  T+    V    FY Y+ KY     
Sbjct: 61  IDLAL--KYDSRILIEQGVVAREIEVGILGNTTVKTTDPGEVVKDVAFYDYQAKYIDNKI 118

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
           T  +PA +P ++  +++  A  A +A+G  G++R
Sbjct: 119 TMDIPAHVPAEVMTQMRTYAAKAFRALGGCGLAR 152


>gi|183585294|gb|ACC63961.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|183585298|gb|ACC63963.1| D-alanine-D-alanine ligase [Clostridium perfringens]
          Length = 131

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 37/137 (27%), Positives = 71/137 (51%), Gaps = 6/137 (4%)

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
            GGSS+   +++  +++   +L++    +  +++IE+Y+ G E+TC ++    L V  I 
Sbjct: 1   NGGSSVATTLVESKEAVKDAVLEAL--KYDTEVMIEEYIKGDEITCPIIDGKMLPVLAIK 58

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
            PK  F+    KY    +   +  K+  D++KEV+++A   ++ + C   +R D L    
Sbjct: 59  -PKGKFFDIASKYEDGGADEFI-VKLNEDLHKEVEKMALETYKLLKCDVYARVDMLV--K 114

Query: 254 SRKVFWLEINVQPGMTP 270
               + LE+N  PGMT 
Sbjct: 115 DNIPYVLEVNTLPGMTK 131


>gi|65319914|ref|ZP_00392873.1| COG1181: D-alanine-D-alanine ligase and related ATP-grasp enzymes
           [Bacillus anthracis str. A2012]
          Length = 110

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 38/101 (37%), Positives = 62/101 (61%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGG+SSE++VS+ +G    + L+   +++  I ++  + L+      D A   LHG
Sbjct: 10  IGVIMGGVSSEKQVSIMTGNEMIANLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 69

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
            +GEDG VQ  LE L IPY+ S +L+S + MDK  SK+++ 
Sbjct: 70  KYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNISKKILR 110


>gi|162451035|ref|YP_001613402.1| putative D-alanine--D-alanine ligase A [Sorangium cellulosum 'So ce
           56']
 gi|161161617|emb|CAN92922.1| putative D-alanine--D-alanine ligase A [Sorangium cellulosum 'So ce
           56']
          Length = 378

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 58/302 (19%), Positives = 124/302 (41%), Gaps = 25/302 (8%)

Query: 19  GKACASALEDA-GFKVSQIDVDR--SVGLVLAHLKPDLAFNVLHGNFGEDGL---VQAIL 72
            ++  +AL  A G +V+   V R   V   +   +PD+ FN+     G+         +L
Sbjct: 44  AESVLAALAAAPGVRVAHRPVLRPSEVLAAIGDHRPDVIFNLCEALDGDSRHEVMCAWLL 103

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKP 132
             L++ +T S  +A    + K  + ++++  GV V  ++ V     D    ++ P ++KP
Sbjct: 104 AGLDLRFTGSDHVALRSCLHKTEANRILARAGVRVPATVRVEG--PDRIPEVAFPVIVKP 161

Query: 133 LKGGSSLGI---IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG---DAS 186
            +   S+GI    V+   +++   +    +      +++++YV G E++  ++G      
Sbjct: 162 EREDGSMGIDRGSVVHDRRALRDQVAAVVA-QCRQPVVVQRYVHGREISVSLLGWPTPRV 220

Query: 187 LDVTEI-----AVPKSDFYSYELKYSSLNSTHV----LPAKIPLDIYKEVQRLAFLAHQA 237
           L   E+             +YE K+    +  +      A +     + V  +   A + 
Sbjct: 221 LPPGEVTFQGLPEGHPHVVTYESKWRPETAASIGTPSSAAVLRPLELRRVVAVGRRAFEV 280

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           +G R   R D   D        +++N    ++P + F   AA AG S+ +++  ++  A 
Sbjct: 281 LGLRDYGRVDVRLDER-GTPHVIDVNPNCDLSPDAGFARAAARAGLSYADVVWEILRAAL 339

Query: 298 CL 299
             
Sbjct: 340 AR 341


>gi|92111874|gb|ABE73681.1| D-alanine:D-alanine ligase [Streptococcus salivarius]
 gi|92111876|gb|ABE73682.1| D-alanine:D-alanine ligase [Streptococcus salivarius]
 gi|92111880|gb|ABE73684.1| D-alanine:D-alanine ligase [Streptococcus salivarius]
          Length = 152

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 36/154 (23%), Positives = 72/154 (46%), Gaps = 10/154 (6%)

Query: 100 VSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153
           +   GVP     +      +     ++   ++ P  +KP   GSS+GI   + +  +   
Sbjct: 1   LEVAGVPQVAYTVYIEGEDLEAAVAETLEKLTFPVFVKPANMGSSVGISKAENEAELRAA 60

Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNS 211
           +  +    +  ++LIEQ V   E+  G++G+ ++  T+    V    FY Y+ KY     
Sbjct: 61  IDLAL--KYDSRILIEQGVVAREIEVGILGNTTVKTTDPGEVVKDVAFYDYQAKYIDNKI 118

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
           T  +PA +P ++  +++  A  A +A+G  G++R
Sbjct: 119 TMDIPAHVPAEVMTQMRAYAAKAFRALGGCGLAR 152


>gi|92111830|gb|ABE73659.1| D-alanine:D-alanine ligase [Streptococcus salivarius]
 gi|92111834|gb|ABE73661.1| D-alanine:D-alanine ligase [Streptococcus salivarius]
 gi|92111838|gb|ABE73663.1| D-alanine:D-alanine ligase [Streptococcus salivarius]
 gi|92111842|gb|ABE73665.1| D-alanine:D-alanine ligase [Streptococcus salivarius]
 gi|92111844|gb|ABE73666.1| D-alanine:D-alanine ligase [Streptococcus salivarius]
 gi|92111846|gb|ABE73667.1| D-alanine:D-alanine ligase [Streptococcus salivarius]
          Length = 152

 Score =  120 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 36/154 (23%), Positives = 71/154 (46%), Gaps = 10/154 (6%)

Query: 100 VSSCGVPVCPSILVNRFT------MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153
           +   GVP     +            ++   ++ P  +KP   GSS+GI   + +  +   
Sbjct: 1   LEVAGVPQVAYTVFIEGEDLEVAVAETLEKLTFPVFVKPANMGSSVGISKAENEAELRAA 60

Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNS 211
           +  +    +  ++LIEQ V   E+  G++G+ ++  T+    V    FY Y+ KY     
Sbjct: 61  IDLAL--KYDSRILIEQGVVAREIEVGILGNTNVKTTDPGEVVKDVAFYDYQAKYIDNKI 118

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
           T  +PA +P ++  +++  A  A +A+G  G++R
Sbjct: 119 TMDIPAHVPAEVMTQMRAYAAKAFRALGGCGLAR 152


>gi|92111840|gb|ABE73664.1| D-alanine:D-alanine ligase [Streptococcus salivarius]
 gi|92111848|gb|ABE73668.1| D-alanine:D-alanine ligase [Streptococcus salivarius]
 gi|92111852|gb|ABE73670.1| D-alanine:D-alanine ligase [Streptococcus salivarius]
          Length = 152

 Score =  120 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 36/154 (23%), Positives = 71/154 (46%), Gaps = 10/154 (6%)

Query: 100 VSSCGVPVCPSILVNRFT------MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153
           +   GVP     +            ++   ++ P  +KP   GSS+GI   + +  +   
Sbjct: 1   LEVAGVPQVAYTVFIEGEDLEAAVAETLEKLTFPVFVKPANMGSSVGISKAENEAELRAA 60

Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNS 211
           +  +    +  ++LIEQ V   E+  G++G+ ++  T+    V    FY Y+ KY     
Sbjct: 61  IDLAL--KYDSRILIEQGVVAREIEVGILGNTNVKTTDPGEVVKDVAFYDYQAKYIDNKI 118

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
           T  +PA +P ++  +++  A  A +A+G  G++R
Sbjct: 119 TMDIPAHVPAEVMTQMRAYAAKAFRALGGCGLAR 152


>gi|92111828|gb|ABE73658.1| D-alanine:D-alanine ligase [Streptococcus salivarius]
          Length = 152

 Score =  120 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 36/154 (23%), Positives = 71/154 (46%), Gaps = 10/154 (6%)

Query: 100 VSSCGVPVCPSILVNRFT------MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153
           +   GVP     +            ++   ++ P  +KP   GSS+GI   + +  +   
Sbjct: 1   LEVAGVPQVAYTVFIEGEDLEAAVAETLEKLTFPVFVKPANMGSSVGISKAENESELRAA 60

Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNS 211
           +  +    +  ++LIEQ V   E+  G++G+ ++  T+    V    FY Y+ KY     
Sbjct: 61  IDLAL--KYDSRILIEQGVVAREIEVGILGNTNIKTTDPGEVVKDVAFYDYQAKYIDNKI 118

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
           T  +PA +P ++  +++  A  A +A+G  G++R
Sbjct: 119 TMDIPAHVPAEVMTQMRAYAAKAFRALGGCGLAR 152


>gi|92111854|gb|ABE73671.1| D-alanine:D-alanine ligase [Streptococcus salivarius]
          Length = 152

 Score =  120 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 36/154 (23%), Positives = 71/154 (46%), Gaps = 10/154 (6%)

Query: 100 VSSCGVPVCPSILVNRFT------MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153
           +   GVP     +            ++   ++ P  +KP   GSS+GI   + +  +   
Sbjct: 1   LEVAGVPQVAYTVFIEGEDLEAAVAETLEKLNFPVFVKPANMGSSVGISKAENEAELRAA 60

Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNS 211
           +  +    +  ++LIEQ V   E+  G++G+ ++  T+    V    FY Y+ KY     
Sbjct: 61  IDLAL--KYDSRILIEQGVVAREIEVGILGNTNVKTTDPGEVVKDVAFYDYQAKYIDNKI 118

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
           T  +PA +P ++  +++  A  A +A+G  G++R
Sbjct: 119 TMDIPAHVPAEVMTQMRAYAAKAFRALGGCGLAR 152


>gi|92111836|gb|ABE73662.1| D-alanine:D-alanine ligase [Streptococcus salivarius]
          Length = 152

 Score =  120 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 36/154 (23%), Positives = 71/154 (46%), Gaps = 10/154 (6%)

Query: 100 VSSCGVPVCPSILVNRFT------MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153
           +   GVP     +            ++   ++ P  +KP   GSS+GI   + +  +   
Sbjct: 1   LEVAGVPQVAYTVFIEGEDLEAAVAETLEKLTFPVFVKPANMGSSVGISKAENEAELRAA 60

Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNS 211
           +  +    +  ++LIEQ V   E+  G++G+ ++  T+    V    FY Y+ KY     
Sbjct: 61  IDLAL--KYDSRILIEQGVVAREIEVGILGNTNVKTTDPGEVVKDVAFYDYQAKYIDNKI 118

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
           T  +PA +P ++  +++  A  A +A+G  G++R
Sbjct: 119 TMDIPAHVPAEVMTQMRSYAAKAFRALGGCGLAR 152


>gi|92111856|gb|ABE73672.1| D-alanine:D-alanine ligase [Streptococcus salivarius]
          Length = 152

 Score =  120 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 36/154 (23%), Positives = 72/154 (46%), Gaps = 10/154 (6%)

Query: 100 VSSCGVPVCPSILVNRFT------MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153
           +   GVP     +            ++   ++ P  +KP   GSS+GI   + +  +   
Sbjct: 1   LEVAGVPQVAYTVFIEGEDLEAAVAETLEKLTFPVFVKPANMGSSVGISKAENEAELRAA 60

Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNS 211
           +  +    +  ++LIEQ V   E+  G++G+ ++  T+    V    FY Y+ KY     
Sbjct: 61  IDLAL--KYDSRILIEQGVVAREIEVGILGNTTVKTTDPGEVVKDVAFYDYQAKYIDNKI 118

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
           T  +PA +P+++  +++  A  A +A+G  G++R
Sbjct: 119 TMDIPAHVPVEVMTQMRAYAAKAFRALGGCGLAR 152


>gi|291286724|ref|YP_003503540.1| hypothetical protein Dacet_0804 [Denitrovibrio acetiphilus DSM
           12809]
 gi|290883884|gb|ADD67584.1| protein of unknown function DUF201 [Denitrovibrio acetiphilus DSM
           12809]
          Length = 329

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 58/311 (18%), Positives = 112/311 (36%), Gaps = 29/311 (9%)

Query: 9   SSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL-KPDLAFNVLHGNFGEDGL 67
           S+++EV L   +   SAL   G K        ++  + AH  +PD  FN++    G D  
Sbjct: 21  SADKEV-LDQAEEIKSALISLGAKPYVTGYKNALKKLSAHKDRPDAVFNLVESVNGTDRD 79

Query: 68  VQA---ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI 124
           +            PYT S   +  +  DK+  K+V++ C +        +++        
Sbjct: 80  MYRAAMFFHNSYYPYTGSPYKSLQVLSDKVVMKRVMADCDILTPMW---HKYNEPDTFFH 136

Query: 125 SPPYVIKPLKGGSSLGII---VIKKDQSIPLDLLQSSSWNHGDQLL-IEQYVDGIELTCG 180
              Y++KPL    S  I    ++        D   +       ++   E+Y+DG E    
Sbjct: 137 KGEYIVKPLYEHGSFKISGESIVSMIDVDDADSKVAGMHPDNPEIFFAERYIDGREFNIS 196

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD---------------IYK 225
           V+      V  + + +  F  Y+ K   +                            + +
Sbjct: 197 VIEVKGEPV-LLPLAEIVFEGYDGKRKIVCEKAKWDENSEEASGTVRTFGTVSKGSRLEE 255

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285
           +++++           G +R D   D L  + + LE+N  P +   + F      AGYS 
Sbjct: 256 KIEKITLKCWDKFNLSGYARVDIRVDAL-GEPYVLEVNANPTLAKDAGFFAACTEAGYSH 314

Query: 286 RELLLWMVEDA 296
            +++  ++  A
Sbjct: 315 NQMIELIILAA 325


>gi|92111878|gb|ABE73683.1| D-alanine:D-alanine ligase [Streptococcus salivarius]
          Length = 152

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 36/154 (23%), Positives = 72/154 (46%), Gaps = 10/154 (6%)

Query: 100 VSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153
           +   GVP     +      +     ++   ++ P  +KP   GSS+GI   + +  +   
Sbjct: 1   LEVAGVPQVAYTVYIEGEDLEAAVAETLEKLAFPVFVKPANMGSSVGISKAENEAELRAA 60

Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNS 211
           +  +    +  ++LIEQ V   E+  G++G+ ++  T+    V    FY Y+ KY     
Sbjct: 61  IDLAL--KYDSRILIEQGVVAREIEVGILGNTTVKTTDPGEVVKDVAFYDYQAKYIDNKI 118

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
           T  +PA +P ++  +++  A  A +A+G  G++R
Sbjct: 119 TMDIPAHVPAEVMTQMRAYAAKAFRALGGCGLAR 152


>gi|92111824|gb|ABE73656.1| D-alanine:D-alanine ligase [Streptococcus salivarius]
          Length = 152

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 36/154 (23%), Positives = 71/154 (46%), Gaps = 10/154 (6%)

Query: 100 VSSCGVPVCPSILVNRFT------MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153
           +   GVP     +            ++   ++ P  +KP   GSS+GI   + +  +   
Sbjct: 1   LEVAGVPQVAYTVYIEGEDLEVAVAETLEKLTFPVFVKPANMGSSVGISKAENEAELRAA 60

Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNS 211
           +  +    +  ++LIEQ V   E+  G++G+ ++  T+    V    FY Y+ KY     
Sbjct: 61  IDLAL--KYDSRILIEQGVVAREIEVGILGNTTVKTTDPGEVVKDVAFYDYQAKYIDNKI 118

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
           T  +PA +P ++  +++  A  A +A+G  G++R
Sbjct: 119 TMDIPAHVPAEVMTQMRAYAAKAFRALGGCGLAR 152


>gi|220961818|gb|ACL93346.1| D-alanine D-alanine ligase [Streptococcus thermophilus]
 gi|220961820|gb|ACL93347.1| D-alanine D-alanine ligase [Streptococcus thermophilus]
          Length = 152

 Score =  120 bits (302), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 36/154 (23%), Positives = 74/154 (48%), Gaps = 10/154 (6%)

Query: 100 VSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153
           +   GVP     +      +     ++   ++ P  +KP   GSS+GI   + +  +   
Sbjct: 1   LEVAGVPQVAYTVYIEGEDLEAAVAETLEKLTFPVFVKPANMGSSVGISKAENESELRSA 60

Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNS 211
           +  +    +  ++LIEQ V   E+  G++G+ ++  T+    V    FY Y+ KY     
Sbjct: 61  IDLAL--KYDSRILIEQGVVAREIEVGILGNTTVKTTDPGEVVKDVAFYDYQAKYIDNKI 118

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
           T  +PA++P+++  +++  A  A +A+G  G++R
Sbjct: 119 TMDIPARVPVEVMTQMRAYAAKAFRALGGCGLAR 152


>gi|92111868|gb|ABE73678.1| D-alanine:D-alanine ligase [Streptococcus salivarius]
 gi|92111870|gb|ABE73679.1| D-alanine:D-alanine ligase [Streptococcus salivarius]
          Length = 152

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 36/154 (23%), Positives = 72/154 (46%), Gaps = 10/154 (6%)

Query: 100 VSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153
           +   GVP     +      +     ++   ++ P  +KP   GSS+GI   + +  +   
Sbjct: 1   LEVAGVPQVAYTVYIEGEDLEAAVAETLEKLTFPVFVKPANMGSSVGISKAENEAELRAA 60

Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNS 211
           +  +    +  ++LIEQ V   E+  G++G+ ++  T+    V    FY Y+ KY     
Sbjct: 61  IDLAL--KYDSRILIEQGVVAREIEVGILGNTTVKTTDPGEVVKDVAFYDYQAKYIDNKI 118

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
           T  +PA +P ++  +++  A  A +A+G  G++R
Sbjct: 119 TMDIPAHVPAEVMTQMRVYAAKAFRALGGCGLAR 152


>gi|183585296|gb|ACC63962.1| D-alanine-D-alanine ligase [Clostridium perfringens]
          Length = 131

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 37/137 (27%), Positives = 70/137 (51%), Gaps = 6/137 (4%)

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
            GGSS+   + +  +++   +L++    +  +++IE+Y+ G E+TC ++    L V  I 
Sbjct: 1   NGGSSVATTLAESKEAVKDAVLEAL--KYDTEVMIEEYIKGDEITCPIIDGKMLPVLAIK 58

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
            PK  F+    KY    +   +  K+  D++KEV+++A   ++ + C   +R D L    
Sbjct: 59  -PKGKFFDIASKYEDGGADEFI-VKLNEDLHKEVEKMALETYKLLKCDVYARVDMLV--K 114

Query: 254 SRKVFWLEINVQPGMTP 270
               + LE+N  PGMT 
Sbjct: 115 DNIPYVLEVNTLPGMTK 131


>gi|68535998|ref|YP_250703.1| putative D-alanine-D-alanine ligase (fragment) [Corynebacterium
           jeikeium K411]
 gi|68263597|emb|CAI37085.1| putative D-alanine-D-alanine ligase (fragment) [Corynebacterium
           jeikeium K411]
          Length = 193

 Score =  119 bits (299), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 43/159 (27%), Positives = 60/159 (37%), Gaps = 46/159 (28%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           +AVL GG SSE  VS  S  A    L+   ++V  + +      V               
Sbjct: 26  VAVLYGGQSSEHSVSCISAGAIMDHLDPERYEVIPVGITPQGAWVPGTVDTSELRADDRE 85

Query: 46  -------------------------------LAHLKPDLAFNVLHGNFGEDGLVQAILEL 74
                                            +   D+ F VLHG  GEDG +Q + EL
Sbjct: 86  MPSVRDRGEHIQLVLGAQTGELRYVSGVHAGRTYAHVDVIFPVLHGQNGEDGTIQGLFEL 145

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
             IPY  +G+LASA  MDK  +K +    GVP    +++
Sbjct: 146 AGIPYVGNGVLASAAGMDKEYTKCLAKQAGVPCGEELIL 184


>gi|78358083|ref|YP_389532.1| D-alanine-D-alanine ligase and related ATP-grasp enzyme-like
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           G20]
 gi|78220488|gb|ABB39837.1| D-alanine-D-alanine ligase and related ATP-grasp enzymes-like
           protein [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 351

 Score =  119 bits (299), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 58/322 (18%), Positives = 108/322 (33%), Gaps = 44/322 (13%)

Query: 16  LSSGKACASALEDAGFKVSQIDVDRSV---GLVLAHLKPDLAFNVLHGNFGEDGLV---- 68
           L   +A   AL   G     + +   +    L +A L PD+ FN++      DG +    
Sbjct: 22  LLQARAVHDALIRRGHAAELLSMTLDLHAASLRIAALNPDVVFNLVEEL---DGDIAMAP 78

Query: 69  --QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN-------RFTMD 119
              A+     IP+T +   +  LS  K+  KQ+++   +     +  +            
Sbjct: 79  LAPALFAHAGIPFTGADAASMTLSGSKLLCKQILTGADICTPAWVTADGVCGGMGDLPRT 138

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSWNHGDQLLIEQYVDGI 175
           +   I   Y+ K +   +SLG+       ++     +  L      HG     EQYV+G 
Sbjct: 139 ADAFIPGRYLCKSVHEHASLGLDDSCIVDAVQTGDVMAALMRCRTRHGGTWFAEQYVEGR 198

Query: 176 ELTCGVMGDA-----SLDVTEIA-----VPKSDFYSYELKYSSLNSTHVLPAK------I 219
           E     + D       L   EI        +     Y  K+   +       +       
Sbjct: 199 EFNIAAIADGNGGVHVLPCAEIEFRGYAPERPRIVGYAAKWHQDSFECSNTVRRFDFCAE 258

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK-----VFWLEINVQPGMTPVSIF 274
              + + ++ +     +A G  G +R DF                +++N  P + P +  
Sbjct: 259 DSALLELLRTVTVRCWRAFGLAGYARIDFRVKGDGSPQAPYIPCVIDVNSNPCIAPDAGL 318

Query: 275 PEMAAYAGYSFRELLLWMVEDA 296
              A   G  +  L+  +V+ A
Sbjct: 319 AAAAEKGGMDYAGLVEGIVQAA 340


>gi|92111866|gb|ABE73677.1| D-alanine:D-alanine ligase [Streptococcus vestibularis]
          Length = 152

 Score =  119 bits (298), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 36/154 (23%), Positives = 73/154 (47%), Gaps = 10/154 (6%)

Query: 100 VSSCGVPVCPS-ILVNRFTMDSQ-----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153
           +   GVP     + +    +++        ++ P  +KP   GSS+GI   + +  +   
Sbjct: 1   LEVAGVPQVAYTVYIEGEDLEAAVAKTVQKLAFPVFVKPANMGSSVGISKAENEAGLHAA 60

Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNS 211
           +  +    +  ++LIEQ V   E+  G++G+ ++  T+    V    FY Y+ KY     
Sbjct: 61  IDLAL--KYDSRILIEQGVVAREIEVGILGNTTVKTTDPGEVVKDVAFYDYQAKYIDNKI 118

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
           T  +PA +P ++  +++  A  A +A+G  G++R
Sbjct: 119 TMDIPAHVPAEVMTQMRAYAAKAFRALGGCGLAR 152


>gi|220961816|gb|ACL93345.1| D-alanine D-alanine ligase [Streptococcus thermophilus]
          Length = 152

 Score =  119 bits (298), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 36/154 (23%), Positives = 74/154 (48%), Gaps = 10/154 (6%)

Query: 100 VSSCGVPVCPSI-LVNRFTMDSQ-----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153
           +   GVP       +    +++        ++ P  +KP   GSS+GI   + +  +   
Sbjct: 1   LEVAGVPQVAYTGYIEGEDLEAAVAETLEKLTFPVFVKPANMGSSVGISKAENESELRSA 60

Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNS 211
           +  +    +  ++LIEQ V   E+  G++G+ ++  T+    V    FY Y+ KY     
Sbjct: 61  IDLAL--KYDSRILIEQGVVAREIEVGILGNTTVKTTDPGEVVKDVAFYDYQAKYIDNKI 118

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
           T  +PA++P+++  +++  A  A +A+G  G++R
Sbjct: 119 TMDIPARVPVEVMTQMRAYAAKAFRALGGCGLAR 152


>gi|49183263|ref|YP_026515.1| D-alanine-D-alanine ligase, N-terminus [Bacillus anthracis str.
           Sterne]
 gi|227812912|ref|YP_002812921.1| putative D-ala D-ala ligase [Bacillus anthracis str. CDC 684]
 gi|254686586|ref|ZP_05150445.1| putative D-ala D-ala ligase [Bacillus anthracis str. CNEVA-9066]
 gi|254734936|ref|ZP_05192648.1| putative D-ala D-ala ligase [Bacillus anthracis str. Western North
           America USA6153]
 gi|254739721|ref|ZP_05197414.1| putative D-ala D-ala ligase [Bacillus anthracis str. Kruger B]
 gi|254754908|ref|ZP_05206943.1| putative D-ala D-ala ligase [Bacillus anthracis str. Vollum]
 gi|254756951|ref|ZP_05208979.1| putative D-ala D-ala ligase [Bacillus anthracis str. Australia 94]
 gi|49177190|gb|AAT52566.1| D-alanine-D-alanine ligase, N-terminus [Bacillus anthracis str.
           Sterne]
 gi|227007613|gb|ACP17356.1| putative D-ala D-ala ligase [Bacillus anthracis str. CDC 684]
          Length = 158

 Score =  118 bits (297), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 40/152 (26%), Positives = 62/152 (40%), Gaps = 38/152 (25%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           + +L GG S+E +VSL +  A   AL    F++  I +      +               
Sbjct: 6   LGLLYGGKSAEHQVSLQTALAAIKALNQDKFEIHPIYITEQGQWIRGERIEGEVANVEVL 65

Query: 46  -----------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
                                        D+ F +LHG  GEDG VQ +LEL+ IPY  +
Sbjct: 66  KMSGAENAISPLSLSTEIIPSANAEENAIDVIFPLLHGPNGEDGTVQGLLELMNIPYVGN 125

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
           G+LASA  MDK+  K + +  G+      +++
Sbjct: 126 GVLASAAGMDKVVMKNIFAEAGLKTSEICIIH 157


>gi|65317671|ref|ZP_00390630.1| COG1181: D-alanine-D-alanine ligase and related ATP-grasp enzymes
           [Bacillus anthracis str. A2012]
          Length = 161

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 40/152 (26%), Positives = 62/152 (40%), Gaps = 38/152 (25%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           + +L GG S+E +VSL +  A   AL    F++  I +      +               
Sbjct: 9   LGLLYGGKSAEHQVSLQTALAAIKALNQDKFEIHPIYITEQGQWIRGERIEGEVANVEVL 68

Query: 46  -----------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
                                        D+ F +LHG  GEDG VQ +LEL+ IPY  +
Sbjct: 69  KMSGAENAISPLSLSTEIIPSANAEENAIDVIFPLLHGPNGEDGTVQGLLELMNIPYVGN 128

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
           G+LASA  MDK+  K + +  G+      +++
Sbjct: 129 GVLASAAGMDKVVMKNIFAEAGLKTSEICIIH 160


>gi|183585292|gb|ACC63960.1| D-alanine-D-alanine ligase [Clostridium perfringens]
          Length = 131

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 37/137 (27%), Positives = 70/137 (51%), Gaps = 6/137 (4%)

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
            GGSS+   +++  +++   +L++    +  +++IE+Y+ G E+TC ++    L V  I 
Sbjct: 1   NGGSSVATTLVESKEAVKDAVLEAL--KYDTEVMIEEYIKGDEITCPIIDGKMLPVLAIK 58

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
            PK  F+    KY    +   +  K+  D++KEV+++A   ++ + C   +R D L    
Sbjct: 59  -PKGKFFDIASKYEDGGADEFI-VKLNEDLHKEVEKMALETYKLLKCDVYARVDMLV--K 114

Query: 254 SRKVFWLEINVQPGMTP 270
                 LE+N  PGMT 
Sbjct: 115 DNIPNVLEVNTLPGMTK 131


>gi|85708773|ref|ZP_01039839.1| hypothetical protein NAP1_06020 [Erythrobacter sp. NAP1]
 gi|85690307|gb|EAQ30310.1| hypothetical protein NAP1_06020 [Erythrobacter sp. NAP1]
          Length = 338

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 56/296 (18%), Positives = 106/296 (35%), Gaps = 30/296 (10%)

Query: 20  KACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLH--GNFGEDGLVQAILELLEI 77
               ++LE  G  +   D   S  ++      D  F +L+  G    + L+  +  +  +
Sbjct: 45  HEVRTSLEQLGLNLHLAD---SYDVLFTRPDVDFVFPLLNRGGFVNSEMLIPVLCNMHRL 101

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP----PYVIKPL 133
           PY  +      L  DK  SK V +  GVP  P     R     +  + P     +VIKP 
Sbjct: 102 PYLGAMPFLRGLGDDKSVSKLVATHAGVPTAPWFCFRRGAPVQESDLPPSPDGRWVIKPN 161

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
              +S GI        +   +       H    ++E Y+DG ++ C  +      V    
Sbjct: 162 ASSASWGISDAYDWNGVTNSIADIHGQGHD--AIVEPYLDGYDVQCAFITMHGKPVALPM 219

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK-------------EVQRLAFLAHQAIGC 240
           +       YE + +    T+     +  +  K              ++ +A    +    
Sbjct: 220 LW------YERENTQKLWTYYEKRDLVPNTEKAALKRFDHAEFAPRIEEMAHKFAREFLP 273

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
               R +F  D  +  + ++EIN+   +    +  + A  AG+S  +LL  ++ +A
Sbjct: 274 FDYGRIEFRVDLKTGDINFIEINLNCNLWSEKVMAKAAKEAGFSHGDLLETLLAEA 329


>gi|296273931|ref|YP_003656562.1| D-alanine--D-alanine ligase domain-containing protein [Arcobacter
           nitrofigilis DSM 7299]
 gi|296098105|gb|ADG94055.1| D-alanine--D-alanine ligase domain protein [Arcobacter nitrofigilis
           DSM 7299]
          Length = 330

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 52/273 (19%), Positives = 101/273 (36%), Gaps = 18/273 (6%)

Query: 39  DRSVGLVLAHLKPDLAFNV---LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
                  +   +PDL       +      + L+    +   I YT           +K+ 
Sbjct: 45  SEEDLEKVLKRRPDLVILAVKYIELRNKSNILLCDYFKKHNINYTGCEKDVLKYDSNKVL 104

Query: 96  SKQVVSSCGVPVCPSIL-VNRFTMDSQHLISPPYVIKPLKGGSSLGI---IVIKKDQSIP 151
           +K  +   G+      + + +   + +  +  P  +KP+   +S GI    +    +   
Sbjct: 105 AKSFLRRKGINTADYFIAMPKEYKEKEFPLEFPVFLKPVNTSNSYGIDEFSLANNFKEYE 164

Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS----LDVTEIAVP--KSDFYSYELK 205
             +L S      + +L+E+Y+DG E T  ++        +   EI  P   S       K
Sbjct: 165 SKIL-SLYTQFKEPILVEKYLDGREFTVAIIKKDEKELLVSAIEILAPLSNSGNNILSEK 223

Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
               NS  +L  +  L +  +++++A  +   +  R   R D   + +  + F+LE N+ 
Sbjct: 224 VKRENSEKLLIIEDTL-LKNKIEKIAQDSFMYLDIRDYGRIDIKMNKV-GECFFLEANLI 281

Query: 266 PGMTP-VSIFPEMAAYA-GYSFRELLLWMVEDA 296
           PGM      FP         ++  +L  MVE A
Sbjct: 282 PGMNERTDYFPRAFKLTQDLNYDNILEMMVESA 314


>gi|254465300|ref|ZP_05078711.1| D-alanine--D-alanine ligase domain protein [Rhodobacterales
           bacterium Y4I]
 gi|206686208|gb|EDZ46690.1| D-alanine--D-alanine ligase domain protein [Rhodobacterales
           bacterium Y4I]
          Length = 303

 Score =  117 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 52/262 (19%), Positives = 84/262 (32%), Gaps = 29/262 (11%)

Query: 27  EDAGFKVSQIDVDRSVGLV--LAHLKPDLAFNVLHGNFGEDGLVQA----ILELLEIPYT 80
              GF      V  S   +      +P L FN++      D    A    +LE   IPYT
Sbjct: 2   NRQGFDARIAHVSGSPVTLPWAEKDRPGLVFNLVEAID-RDMERAAEVLPLLEEEGIPYT 60

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLG 140
                A   ++ K   K +++  G+P                +     ++K +   +SLG
Sbjct: 61  GCSAAAQLATLSKTAQKCLMTRHGLPTPDW-----PQAGPALVQLGRVIVKSITEHASLG 115

Query: 141 IIVIKKDQSIPLDLLQSSSW-NHGDQLLIEQYVDGIELTCGVM----GDASLDVTEI--- 192
           +               +     +G     E+Y++G E    ++    G   L   EI   
Sbjct: 116 MDAQSVVPGSQAAEEITRRQTRYGGTFFAEEYIEGREFNLSLLECGTGVRVLPPAEILFE 175

Query: 193 --AVPKSDFYSYELKYSS-LNSTHVLP-----AKIPLDIYKEVQRLAFLAHQAIGCRGIS 244
                      Y  K+    +S H  P           +   +  LA    Q  G  G +
Sbjct: 176 DFEPGAPRIVDYAAKWDDTAHSYHHTPRRFTFPDRDSALLSRLAELAQRIWQVFGLSGYA 235

Query: 245 RSDFLFDPLSRKVFWLEINVQP 266
           R DF  D    + + LE+N  P
Sbjct: 236 RVDFRVDE-GGRPWILEVNTNP 256


>gi|7157933|gb|AAF37346.1|AF170807_1 D-alanine:D-alanine ligase [Enterococcus raffinosus]
          Length = 125

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 33/127 (25%), Positives = 60/127 (47%), Gaps = 5/127 (3%)

Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA--V 194
           SS+GI   +  + +   L +  ++ +  + L+EQ +D  E+   V+G+  +  T     V
Sbjct: 1   SSVGITRAENREELQNALQE--AYRYDSRALVEQGIDAREIEVAVLGNDDVRTTLPGEIV 58

Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
            +  FY Y  KY        +PA IP ++ ++ +  A  A+  +G  G+SR DF      
Sbjct: 59  KEEAFYDYNAKYIDNTIQMAIPANIPEEVMQKARDYAKSAYTMLGGSGLSRIDFFLTNK- 117

Query: 255 RKVFWLE 261
            ++F  E
Sbjct: 118 NELFLNE 124


>gi|303238623|ref|ZP_07325156.1| ATP-dependent carboxylate-amine ligase domain protein ATP-grasp
           [Acetivibrio cellulolyticus CD2]
 gi|302593742|gb|EFL63457.1| ATP-dependent carboxylate-amine ligase domain protein ATP-grasp
           [Acetivibrio cellulolyticus CD2]
          Length = 337

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 52/305 (17%), Positives = 111/305 (36%), Gaps = 35/305 (11%)

Query: 13  EVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--LAHLKPDLAFNVLHG--NFGEDGLV 68
           E+S     A  SA+++ GF+V  +     +     +   + D  FN+  G        + 
Sbjct: 42  EIS-----AVVSAVKNLGFEVRILGTPDDIITNMGIVKKQVDFIFNLSVGFRRRFRLSVA 96

Query: 69  QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ-HLISPP 127
            AI E   +PY+ +      +  +K   K +     +P  P   ++  +   +  L   P
Sbjct: 97  PAIYEAAGVPYSGADPYTKMVCQNKHLMKSLWDKMNIPTPPWAYIDNISKVQELELPEFP 156

Query: 128 YVIKPLKGGSSLGII---VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
            +IKP   G+S+GI    V    + +   +    S  H   L+IE+++ G E    V+G+
Sbjct: 157 IIIKPAYEGNSIGINANAVAYNKEELFSKIEAIYSTLHMP-LIIEKFIAGKEYKIVVIGN 215

Query: 185 ASLDVTEIAV--------PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
            +     +           +++F  +  K +           +P   YK ++      ++
Sbjct: 216 KNQKFIGMVEYLNGGGSSLRNEFIYFSAKVNGDYYQVRRDINLPE--YKSIKSDCQAIYE 273

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP-----EMAAYAGYSFRELLLW 291
                     D   D   +  ++LE N        S+ P     +        + +++  
Sbjct: 274 MFLPVDYGTFDIRVDEYGKH-YFLEFNA-----DDSLHPVRTMAQCCKLNDIDYEKMIES 327

Query: 292 MVEDA 296
           +++ +
Sbjct: 328 ILKSS 332


>gi|115449421|ref|XP_001218602.1| predicted protein [Aspergillus terreus NIH2624]
 gi|114187551|gb|EAU29251.1| predicted protein [Aspergillus terreus NIH2624]
          Length = 262

 Score =  115 bits (290), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 84/222 (37%), Gaps = 26/222 (11%)

Query: 58  LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--- 114
            HG   E   V A+L+  +IPYT S     AL   K  +K +++   +P  P  L++   
Sbjct: 5   FHGTSRES-QVPALLDAYQIPYTFSDSNTMALCQHKANTKAILNHYRIPTAPFFLLSIGN 63

Query: 115 ----RFTMDSQHLISPPYVIKPLKGGSSLGI---IVIKKDQSIPLDLLQSSSWNHGDQLL 167
                 +      +S P  +KP+  GSS GI     +     +   +    S   G  +L
Sbjct: 64  VLPKSSSEIHTSALSFPVFLKPVSEGSSKGIDDFNKVNDIAGLETAVQNLKSRYPGQDIL 123

Query: 168 IEQYVDGIELTCGVMGDASLD--------VTEIAVPKSD------FYSYELKYSSLNS-T 212
           +E ++ G E T  ++G  +          + +  +          F + E K ++     
Sbjct: 124 VESFLSGPEYTVSILGTGTHSRVVGVREHIWQNRIKDDGCGTNLNFATRENKSTAGTGLA 183

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
                 +     K   ++A  A +A GCR   R D  FD  +
Sbjct: 184 WSDSHDMADPRIKAACQVALDAWKAFGCRDAGRVDIRFDSDN 225


>gi|313192159|emb|CBX19939.1| D alanine-D alanine ligase [Clostridium perfringens]
 gi|313192163|emb|CBX19941.1| D alanine-D alanine ligase [Clostridium perfringens]
          Length = 128

 Score =  114 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 35/134 (26%), Positives = 69/134 (51%), Gaps = 6/134 (4%)

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
            GGSS+   +++  +++   +L++    +  +++IE+Y+ G E+TC ++    L V  I 
Sbjct: 1   NGGSSVATTLVESKEAVKDAVLEAL--KYDTEVMIEEYIKGDEITCPIIDGKMLPVLAIK 58

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
            PK  F+    KY    +   +  K+  D++KEV+++A   ++ + C   +R D L    
Sbjct: 59  -PKGKFFDIASKYEDGGADEFI-VKLNEDLHKEVEKMALETYKLLKCDVYARVDMLV--K 114

Query: 254 SRKVFWLEINVQPG 267
               + LE+N  PG
Sbjct: 115 DNIPYVLEVNTLPG 128


>gi|115375715|ref|ZP_01462969.1| hypothetical protein STIAU_3834 [Stigmatella aurantiaca DW4/3-1]
 gi|310825148|ref|YP_003957506.1| hypothetical protein STAUR_7924 [Stigmatella aurantiaca DW4/3-1]
 gi|115367278|gb|EAU66259.1| hypothetical protein STIAU_3834 [Stigmatella aurantiaca DW4/3-1]
 gi|309398220|gb|ADO75679.1| uncharacterized protein [Stigmatella aurantiaca DW4/3-1]
          Length = 332

 Score =  114 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 57/247 (23%), Positives = 93/247 (37%), Gaps = 26/247 (10%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAI-----LELLEIPYTHSGILASALSMDKM 94
           + V   LA    D   N+  G   ED  +  +     LE L + YT +     A S  + 
Sbjct: 46  QEVLEQLAAEGFDAFINLCDGAPDED--IAGVEVIHHLERLGLAYTGADTRFYAAS--RE 101

Query: 95  RSKQVVSSCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGSSLGI---IVIKKDQS 149
             KQ     G+                +   +  P ++KP  G +S+GI     +   ++
Sbjct: 102 ELKQAWLDHGIGTPAHHFATDLASVEQAAGKLRFPMLVKPSSGYASVGIERGSKVSTREA 161

Query: 150 IPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA-------SLDVTEIAVPKSD-FYS 201
           + LD    +    G  LL+E+++ G E T  V                EI  P  + F  
Sbjct: 162 L-LDRAGRTLSQFGG-LLLEEFIAGREFTVLVAEPRRGERVPWVHPPVEIHFPPGETFKH 219

Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
           ++LK+ + N+ H  P  +   +   +  +A     A+  RG  R D   D     +F L+
Sbjct: 220 FDLKWMNYNAMHTRPV-LDAGLVARLSEMAQQTFLAVNARGYCRCDIRMDE-DGHLFMLD 277

Query: 262 INVQPGM 268
            N  PGM
Sbjct: 278 CNANPGM 284


>gi|163750536|ref|ZP_02157774.1| D-alanine--D-alanine ligase [Shewanella benthica KT99]
 gi|161329691|gb|EDQ00680.1| D-alanine--D-alanine ligase [Shewanella benthica KT99]
          Length = 295

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 47/244 (19%), Positives = 88/244 (36%), Gaps = 16/244 (6%)

Query: 65  DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI 124
           D  +        I +T S         +K+ +K  +S+ G+              ++H +
Sbjct: 44  DIWLADYFADHGINFTGSSRDVLDFDSNKVSAKDHLSAKGIATARYFTAIPGQYKNEHEL 103

Query: 125 S--PPYVIKPLKGGSSLGI---IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
               P  +KPL   +  G+     +         +  S         L+E+Y+ G E T 
Sbjct: 104 PITFPLFLKPLDAANGNGVDDSSFVTNFLEFEAKIA-SLDKEFNHPTLVEEYLPGREFTV 162

Query: 180 GVM--GDASLDVTEIAV----PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
            ++   +  L V+ I +     K+       K    +S  +        +   V+ LA  
Sbjct: 163 AIIQASNGQLLVSPIELVPPESKNGLRILGAKVKKDDSEELKKID-DDAMKTRVKALAIE 221

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP-VSIFPEMAA-YAGYSFRELLLW 291
               +G R   R D +    S + F++E N+ PGMT   S FP         ++ E++  
Sbjct: 222 CFVHLGVRDYGRID-ILADKSGQCFFIEANLVPGMTSGSSYFPLACEIEHQLTYDEVVNL 280

Query: 292 MVED 295
           ++E 
Sbjct: 281 IIEQ 284


>gi|85374184|ref|YP_458246.1| hypothetical protein ELI_06785 [Erythrobacter litoralis HTCC2594]
 gi|84787267|gb|ABC63449.1| hypothetical protein ELI_06785 [Erythrobacter litoralis HTCC2594]
          Length = 336

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 57/290 (19%), Positives = 106/290 (36%), Gaps = 18/290 (6%)

Query: 20  KACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLH--GNFGEDGLVQAILELLEI 77
               S LE  G  ++  D  R +         D  F +L+  G    + L+  +  +  I
Sbjct: 44  HEVRSTLEGMGLNLALADTYRVLFDTPDA---DFVFPLLNRGGFVNSEMLIPTLCNMHRI 100

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPP----YVIKPL 133
           PY  +      L  DK  SK V +  GVP        R     +  +       +VIKP 
Sbjct: 101 PYLGAMPFLRGLGDDKSVSKLVSTHAGVPTADWFCFRRGAPVEEASLPAAPDGRWVIKPN 160

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM----GDASLDV 189
              +S GI      Q +   +       H    ++E Y+DG ++ C  +       +L +
Sbjct: 161 ASSASWGISDAFDFQGVANAIANIHGQGHD--AIVEPYLDGYDVQCAFITIDGEARALPM 218

Query: 190 TEIAVPKSD-FYSYELKYSSLNSTHVLPAK--IPLDIYKEVQRLAFLAHQAIGCRGISRS 246
                  +   ++Y  K   + +T     K     D    +  +A    + +      R 
Sbjct: 219 LWYEREDTQKLWTYYEKRDLVQNTEKAALKTFDNPDFAPLITDMARKVARELLPFDYGRI 278

Query: 247 DFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +F  D     + ++EIN+   +    +  + A +AG+S  +LL  ++ ++
Sbjct: 279 EFRVDLEKGDINFIEINLNCNLWSEKVMAKAAKFAGFSHADLLETLLAES 328


>gi|24215399|ref|NP_712880.1| D-alanine--D-alanine ligase [Leptospira interrogans serovar Lai
           str. 56601]
 gi|45657184|ref|YP_001270.1| d-alanine--d-alanine ligase [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|24196516|gb|AAN49898.1|AE011436_13 D-alanine--D-alanine ligase [Leptospira interrogans serovar Lai
           str. 56601]
 gi|45600422|gb|AAS69907.1| d-alanine--d-alanine ligase [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
          Length = 374

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 71/312 (22%), Positives = 124/312 (39%), Gaps = 48/312 (15%)

Query: 15  SLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------LKPDLAFNVLHGNFGEDG-- 66
           S  S  A    L + G  +  +     +   L         K  + F+++ G    +   
Sbjct: 31  SKKSVDAILELLNEVGESIELVVTPNELLEKLKCYCDLDFSKRPVIFHLMEGFCSRNRES 90

Query: 67  LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI-- 124
           L+ A+ EL   P+T S   +  +S+DK  ++    S GVPV     +    +  + L+  
Sbjct: 91  LIPAVAELFGFPHTGSDSYSQNVSLDKNLTRIFAQSIGVPVASGFWIRSKDVLFKELLQL 150

Query: 125 -----------------------SPPYVIKPLKGGSSLGII---VIKKDQSIPLDLLQSS 158
                                  S P  IKP   GSSLGI    +I   + +    L S 
Sbjct: 151 ECNSEIKKRFSFSKGNELNLKNFSFPAFIKPAGEGSSLGIGEKNIIYSFEELNT--LLSE 208

Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASL----DVTEIAVPKSDFYSYELKYSSLNSTHV 214
           +       L+E+Y+ G E T  V+G A+           + + D    ++      S  +
Sbjct: 209 APEIFFPYLLEEYLTGNEYTISVIGSATFGYKVSSAGRLILREDLKVEDVYGEKTKSKSI 268

Query: 215 LPAKI----PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270
           +P  +    P D+   +Q+ + L  +++G  G +R D+  D L    F+LE+N+ PG++P
Sbjct: 269 MPETLVFDCPKDLEVIIQQQSVLFCESLGTSGPARLDWKLDSLGN-PFFLEMNLTPGLSP 327

Query: 271 V-SIFPEMAAYA 281
             S FP    ++
Sbjct: 328 FYSTFPICYRHS 339


>gi|313192171|emb|CBX19945.1| D alanine-D alanine ligase [Clostridium perfringens]
 gi|313192173|emb|CBX19946.1| D alanine-D alanine ligase [Clostridium perfringens]
          Length = 128

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 34/134 (25%), Positives = 68/134 (50%), Gaps = 6/134 (4%)

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
            GGSS+   +++  + +   +L++    +  +++IE+Y+ G E+TC ++    L V  I 
Sbjct: 1   NGGSSVATTLVESKEGVKDAVLEAL--KYDTEVMIEEYIKGDEITCPIIDGKMLPVLAIK 58

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
            PK  F+    KY    +   +  ++  D++KEV+++A   ++ + C   +R D L    
Sbjct: 59  -PKGKFFDIASKYEDGGADEFI-VELNEDLHKEVEKMALETYKLLKCDVYARVDMLV--K 114

Query: 254 SRKVFWLEINVQPG 267
               + LE+N  PG
Sbjct: 115 DNIPYVLEVNTLPG 128


>gi|157870774|ref|XP_001683937.1| hypothetical protein [Leishmania major strain Friedlin]
 gi|68127004|emb|CAJ05423.1| conserved hypothetical protein [Leishmania major strain Friedlin]
          Length = 1118

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 55/254 (21%), Positives = 100/254 (39%), Gaps = 25/254 (9%)

Query: 35  QIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAI-----LELLEIPYTHSGILASAL 89
           +ID  R+V  ++   K D+ FN+  G  G D     +     LE     +T +       
Sbjct: 604 KIDSYRTVRKLVTSSKYDVFFNLCDG--GRDEKRAGVDVVEALEEQNAAFTGTDSRGFEP 661

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKD 147
           S  K+  K +V S GV V   +L++     ++    +  P ++K L G +S+GI    + 
Sbjct: 662 S--KIDMKLMVGSSGVKVPNFVLLSNAESLAKKCRHLKFPVIVKHLSGYASVGIQKDSRC 719

Query: 148 QSIPLDLLQSSSW-NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA--------VPKSD 198
            ++     +   +    +  L+E+++ G E T     D                 +  +D
Sbjct: 720 DTLDQLRTKVRGFIKEYNHALVEEFIRGREGTVLACADPGSPFGVKVFKPLMFNFLQNND 779

Query: 199 FYSYELKY---SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ-AIGCRGISRSDFLFDPLS 254
            ++Y  K       +  +   A      Y  +  +A  A +  +   G  R DF  D L+
Sbjct: 780 DFAYFEKKWTMECGDQAYGFLASSDPA-YTAITEMARNAFKYIMNGVGYGRVDFRIDELT 838

Query: 255 RKVFWLEINVQPGM 268
            + ++LEIN   GM
Sbjct: 839 GEPYFLEINPNCGM 852


>gi|322492477|emb|CBZ27752.1| conserved hypothetical protein [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 868

 Score =  112 bits (282), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 55/254 (21%), Positives = 100/254 (39%), Gaps = 25/254 (9%)

Query: 35  QIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAI-----LELLEIPYTHSGILASAL 89
           +ID  R+V  ++   K D+ FN+  G  G D     +     LE     +T +       
Sbjct: 354 KIDSYRAVRKLVTSKKYDVFFNLCDG--GRDEKRAGVDVVEALEEQNAAFTGTDSRGFEP 411

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKD 147
           S  K+  K +V S GV V   +L++     ++    +  P ++K L G +S+GI    + 
Sbjct: 412 S--KIDMKLMVGSSGVKVPNFVLLSNDESLAKKCRHLKFPVIVKHLSGYASVGIQKDNRC 469

Query: 148 QSIPLDLLQSSSW-NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA--------VPKSD 198
            ++     +   +    +  L+E+++ G E T     D                 +  +D
Sbjct: 470 DTLDQLRTKVRGFIKEYNHALVEEFIRGREGTVLACADPGSPFGVKVFKPLMFNFLQNND 529

Query: 199 FYSYELKY---SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ-AIGCRGISRSDFLFDPLS 254
            ++Y  K       +  +   A      Y  +  +A  A +  +   G  R DF  D L+
Sbjct: 530 DFAYFEKKWTMECGDQAYGFLASSDPA-YTAITEMARNAFKYIMNGVGYGRVDFRIDELT 588

Query: 255 RKVFWLEINVQPGM 268
            + ++LEIN   GM
Sbjct: 589 GEPYFLEINPNCGM 602


>gi|158335744|ref|YP_001516916.1| D-alanine--D-alanine ligase A [Acaryochloris marina MBIC11017]
 gi|158305985|gb|ABW27602.1| D-alanine--D-alanine ligase A [Acaryochloris marina MBIC11017]
          Length = 330

 Score =  112 bits (282), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 55/293 (18%), Positives = 103/293 (35%), Gaps = 18/293 (6%)

Query: 21  ACASALEDAGFKVSQIDVDRSVGLVLAHLK-PDLAFNVLHGNFGEDGLV--QAILELLEI 77
           A   AL D G  V  I    S+         PDL +N+  G    +      A+LE L I
Sbjct: 35  AVTHALTDLGHTVDAIGSLESLLHRWQQQDLPDLVWNLSVGALSRNRTALAPALLEHLGI 94

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGS 137
           PYT       +L+++K   K V+  CG+   P          ++    P  ++KP   G 
Sbjct: 95  PYTGGDAATKSLTLNKDWLKPVLEWCGIATPPWRRFGLEESITELPPWPVSLLKPTCEGY 154

Query: 138 SLGIIVIKKDQSIP--LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195
           SLG+   +    +      +Q         +L E  + G E+T GV+G+    +      
Sbjct: 155 SLGLQRFETQDGLAVLQKQVQQLQSQFQTAVLCEPLIAGREITVGVVGNLEPSLLGAVET 214

Query: 196 --------KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
                   +      + K        V    +     + ++  A      +     +  D
Sbjct: 215 LTTSGQALQEQVLDLQAK-RQGGFQKVN-VDLADSDLQPLRSAALKLMNLLQPLDYATFD 272

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           F       + + +++N    + P+    ++A     ++  L+  ++   +C R
Sbjct: 273 FRLGR--GQAYLVDVNADATLHPLRSLAQIAQAQKLTYPHLI-KLILMTTCHR 322


>gi|313192157|emb|CBX19938.1| D alanine-D alanine ligase [Clostridium perfringens]
 gi|313192161|emb|CBX19940.1| D alanine-D alanine ligase [Clostridium perfringens]
 gi|313192167|emb|CBX19943.1| D alanine-D alanine ligase [Clostridium perfringens]
          Length = 127

 Score =  112 bits (280), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 34/133 (25%), Positives = 68/133 (51%), Gaps = 6/133 (4%)

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
            GGSS+   +++  +++   +L++    +  +++IE+Y+ G E+TC ++    L V  I 
Sbjct: 1   NGGSSVATTLVESKEAVKDAVLEAL--KYDTEVMIEEYIKGDEITCPIIDGKMLPVLAIK 58

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
            PK  F+    KY    +   +  K+  D++KEV+++A   ++ + C   +R D L    
Sbjct: 59  -PKGKFFDIASKYEDGGADEFI-VKLNEDLHKEVEKMALETYKLLKCDVYARVDMLV--K 114

Query: 254 SRKVFWLEINVQP 266
               + LE+N  P
Sbjct: 115 DNIPYVLEVNTLP 127


>gi|313192155|emb|CBX19937.1| D alanine-D alanine ligase [Clostridium perfringens]
          Length = 127

 Score =  112 bits (280), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 34/133 (25%), Positives = 67/133 (50%), Gaps = 6/133 (4%)

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
            GGSS+   +++  +++   +L++    +  +++IE+Y+ G E+TC ++    L V  I 
Sbjct: 1   NGGSSVATTLVESKEAVKDAVLEAL--KYDTEVMIEEYIKGDEITCPIIDGKMLPVLAIK 58

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
            PK  F+    KY    +   +  K+  D+ KEV+++A   ++ + C   +R D L    
Sbjct: 59  -PKGKFFDIASKYEDGGADEFI-VKLNEDLNKEVEKMALETYKLLKCDVYARVDMLV--K 114

Query: 254 SRKVFWLEINVQP 266
               + LE+N  P
Sbjct: 115 DNIPYVLEVNTLP 127


>gi|253580995|ref|ZP_04858256.1| D-alanine-D-alanine ligase [Ruminococcus sp. 5_1_39B_FAA]
 gi|251847658|gb|EES75627.1| D-alanine-D-alanine ligase [Ruminococcus sp. 5_1_39BFAA]
          Length = 331

 Score =  111 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 59/299 (19%), Positives = 121/299 (40%), Gaps = 35/299 (11%)

Query: 22  CASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDG--LVQAILELLEIPY 79
             ++L+    KV+  +   +    +   + D+ F +  GN   +   LV  I E   I Y
Sbjct: 37  IYNSLQRISPKVTHYNDLPTFIDNIYKHRNDIVFTIYGGNSSRNRMALVPGICESYNIKY 96

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ---HLISPPYVIKPLKGG 136
             + +    +  DK  SK++    G+ V  S+ +N     +    HL+  P VIKPL  G
Sbjct: 97  VGADVYNRIICQDKNISKELAKKAGILVPDSVTINSLDNLNTFNLHLLKYPVVIKPLMEG 156

Query: 137 SSLGIIV---IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS----LDV 189
           SS+GI      +   +I   + +     +   +++EQ++ G E+   ++G +      ++
Sbjct: 157 SSIGITKNSLCQNANNIKEKI-EKLYKTYNQPIMVEQFIPGKEIVTCLVGSSKNIRLAEM 215

Query: 190 TEIAVPKSDF------YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
            E+ V + +       Y+ E+K+ +  +T+     I  +I   +         + G    
Sbjct: 216 VEVCVEQDNTYFNDKLYTGEIKHQNKVNTYHRI--ITSEIDGSIMNTIKQVFTSFGKMDY 273

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPV-SI-----FPEMAAYAGYSFRELLLWMVEDA 296
            R D      + K + +E       TP  S+     F ++  Y   ++  L+  ++  +
Sbjct: 274 MRIDGKL--YNNKFYMIE------FTPDASLSAHCSFKDIYEYQNKTYDNLMEDIINSS 324


>gi|83771332|dbj|BAE61464.1| unnamed protein product [Aspergillus oryzae]
          Length = 220

 Score =  111 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 48/208 (23%), Positives = 75/208 (36%), Gaps = 36/208 (17%)

Query: 121 QHLISPPYVIKPLKGGSSLGI---IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
           Q L S P  IKP   GSS GI     +     +   +    +   G  +LIE ++ G E 
Sbjct: 4   QKLSSFPLFIKPACEGSSKGIYPSSKVDNFTELERGIQVLQTRFPGASILIETFLSGQEY 63

Query: 178 TCGVMGDA----SLDVTEIA--------------------VPKSDFYSYELKYSSLNSTH 213
           T  ++G       +  T I                          F+    K        
Sbjct: 64  TVSIIGTGKRSRVIGTTHIDWEGLSRQKQQASVAEKGPANTSDGSFWDVNNKNGPDADE- 122

Query: 214 VLPAKI----PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
             P +          + V+ LA  A +A+ C  + R D  +     + + LEIN  PG+ 
Sbjct: 123 --PERFLNSRDNPNVQAVEDLALQAWRALECCDVGRVDIRY-GADNRPYVLEINPLPGLR 179

Query: 270 P-VSIFPEMAAYAGYSFRELLLWMVEDA 296
           P  SI    A + G S +EL+  +++ A
Sbjct: 180 PDWSILARTAVHEGISHKELIGKVIDSA 207


>gi|58045582|gb|AAW65099.1| vancomycin resistance protein [Enterococcus gallinarum]
          Length = 146

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 39/144 (27%), Positives = 74/144 (51%), Gaps = 10/144 (6%)

Query: 77  IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVI 130
           +PY    + ASAL M+K    Q+  + G+   P++L++R+  D   +         P  I
Sbjct: 2   LPYVGCHVAASALCMNKWLLHQLADTMGIASAPTLLLSRYENDPATIDRFIQDHGFPIFI 61

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190
           KP + GSS GI  +    ++   L  ++++ +G  +LI++ + GIE+ CG++G+  L + 
Sbjct: 62  KPNEAGSSKGITKVTDKTALQSAL--TTAFAYGSTVLIQKAIAGIEIGCGILGNEQLTIG 119

Query: 191 EIAVPK--SDFYSYELKYSSLNST 212
                     F+ +E KY  +++T
Sbjct: 120 ACDAISLVDGFFDFEEKYQLISAT 143


>gi|58045586|gb|AAW65101.1| vancomycin resistance protein [Enterococcus gallinarum]
          Length = 148

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 39/144 (27%), Positives = 74/144 (51%), Gaps = 10/144 (6%)

Query: 77  IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVI 130
           +PY    + ASAL M+K    Q+  + G+   P++L++R+  D   +         P  I
Sbjct: 4   LPYVGCHVAASALCMNKWLLHQLADTMGIASAPTLLLSRYENDPATIDRFIQDHGFPIFI 63

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190
           KP + GSS GI  +    ++   L  ++++ +G  +LI++ + GIE+ CG++G+  L + 
Sbjct: 64  KPNEAGSSKGITKVTDKTALQSAL--TTAFAYGSTVLIQKAIAGIEIGCGILGNEQLTIG 121

Query: 191 EIAVPK--SDFYSYELKYSSLNST 212
                     F+ +E KY  +++T
Sbjct: 122 ACDAISLVDGFFDFEEKYQLISAT 145


>gi|190894037|ref|YP_001984331.1| putative D-alanine-D-alanine ligase protein [Rhizobium etli CIAT
           652]
 gi|190699698|gb|ACE93781.1| putative D-alanine-D-alanine ligase protein [Rhizobium etli CIAT
           652]
          Length = 397

 Score =  110 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 44/145 (30%), Positives = 73/145 (50%), Gaps = 4/145 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + +L GG S+ER  SL +       L++    V  ++ +    L+ A L+ D   +V++G
Sbjct: 215 LVLLAGGSSTERAASLETKDVLLPHLQNLCRSVEFVEPNDVEQLLRAVLQCDFVLSVVYG 274

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV----NRF 116
             GEDG +Q  L++L +PY+    L SA+ M+K     ++   G PV    LV    +  
Sbjct: 275 AGGEDGTMQGFLDILRVPYSGPSTLPSAIGMNKDIFVSLLRDWGYPVPRGRLVAALGDPR 334

Query: 117 TMDSQHLISPPYVIKPLKGGSSLGI 141
           +   +   S   V+KP+  GSS+GI
Sbjct: 335 SWPLELQQSQVLVLKPIGEGSSIGI 359


>gi|154339056|ref|XP_001565750.1| hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904]
          Length = 814

 Score =  110 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 57/254 (22%), Positives = 99/254 (38%), Gaps = 25/254 (9%)

Query: 35  QIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAI-----LELLEIPYTHSGILASAL 89
           +ID  R+V  ++   K D+ FN+  G  G D     +     LE     +T +       
Sbjct: 302 KIDSYRTVRKLVTSNKYDVFFNLCDG--GRDEKRAGVDVVEALEEQNAAFTGTDSRGFEP 359

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKD 147
           S  K+  K +V S GV V   +L+N     ++    +  P ++K L G +S+GI    + 
Sbjct: 360 S--KIDMKLMVGSSGVKVPNFVLLNDEEGLAKKCRHLKFPVIVKHLSGYASVGIHKENRC 417

Query: 148 QSIPLDLLQSSSW-NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA--------VPKSD 198
            ++     +   +    +  L+E+++ G E T     D                 +  SD
Sbjct: 418 DTLDQLRTRVRGFIKEYNHALVEEFIRGREGTVLACADPGSPFGVKVFKPLMFNFLQSSD 477

Query: 199 FYSYELKY---SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ-AIGCRGISRSDFLFDPLS 254
            ++Y  K       +  +   A      Y  +  +A  A +  +   G  R DF  D L+
Sbjct: 478 DFAYFEKKWTMECGDQAYGFLASSDPA-YPAITEMARNAFKYIMNGVGYGRVDFRIDELT 536

Query: 255 RKVFWLEINVQPGM 268
              ++LEIN   GM
Sbjct: 537 GAPYFLEINPNCGM 550


>gi|144897235|emb|CAM74099.1| D-alanine--D-alanine ligase [Magnetospirillum gryphiswaldense
           MSR-1]
          Length = 90

 Score =  110 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 42/89 (47%), Positives = 57/89 (64%), Gaps = 4/89 (4%)

Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP----LSRKVFWLEINVQPGMTP 270
           +PA IP + Y E  RLA  AH+ +GCRG+SR+D  +D        ++  LE+N QPGMT 
Sbjct: 1   MPAPIPAEDYAEACRLAVEAHRVLGCRGVSRADLRYDDTKPGQKPRLIVLEVNTQPGMTA 60

Query: 271 VSIFPEMAAYAGYSFRELLLWMVEDASCL 299
            S+ P++A+Y G SF EL+ WMVE A C 
Sbjct: 61  TSLVPDIASYCGISFPELVRWMVEQAECD 89


>gi|224383912|gb|ACN42752.1| Ddl [Oenococcus oeni]
          Length = 165

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 43/165 (26%), Positives = 72/165 (43%), Gaps = 24/165 (14%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVS-QIDVDRSVGLVLAHLKPDLAFNVLHGN 61
           VL G    E E          + L +    +   ID  R++       K D+ F  +HGN
Sbjct: 18  VLFG----EDE------DELLAGLPNKNADIFGPIDSIRNL-------KLDVLFPSVHGN 60

Query: 62  FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV-----NRF 116
            GEDG +  +  L+ IPY  SG+ A A+S DK+ +K++++  G+     I++     N+ 
Sbjct: 61  LGEDGTLAGLFRLMNIPYVGSGLRAHAISFDKVITKELMTVNGIRNTKYIVIFQNDKNKP 120

Query: 117 TMDS-QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160
             DS    +     +K    GSS+G+  +   +     L  S  +
Sbjct: 121 DWDSVSKQLGEVVFVKAANQGSSVGVSRVTNAEEYENALRDSFQY 165


>gi|261326861|emb|CBH09834.1| hypothetical protein, conserved [Trypanosoma brucei gambiense
           DAL972]
          Length = 771

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 62/303 (20%), Positives = 115/303 (37%), Gaps = 45/303 (14%)

Query: 27  EDAGFKVSQI-----DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAI-----LELLE 76
           +   +  +++     D  R V  ++     D+ FN+  G  G+D     I     LE   
Sbjct: 243 DKNRYSFTEVAVRKDDAYRQVRELVTSNNFDVFFNLCDG--GKDEKRAGIDVLEALEEHN 300

Query: 77  IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL--ISPPYVIKPLK 134
             +T +   +   S  K+  K +V+  GV     +L+++    ++    +  P ++K L 
Sbjct: 301 AAFTGTDSRSFEPS--KIDMKVLVAGAGVNTPNFVLLDKTEGLAKKCRHLRFPVIVKHLS 358

Query: 135 GGSSLGIIVIKKDQSI-PLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
           G +S+GI    +  ++  L +   +     +  L+E+++ G E T     D+        
Sbjct: 359 GYASVGINKDNRCDTLDELKVKVGTFLKEFNHALVEEFIRGREGTVLACADSGSPHGVKV 418

Query: 194 --------VPKSDFYSYELKYSSLNSTHVLPAKIP--LDIYKEVQRLAFLAHQ-AIGCRG 242
                   +   D ++Y  K  S+       + +P     Y  +  +A  A Q  +   G
Sbjct: 419 FRPLMFNFLQNEDDFAYFDKKWSMECNDEACSFLPHNDPAYPRIIDMARNAFQHIMNGVG 478

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL---------LWMV 293
             R DF  DP    V++LEIN   GM   S         G  F +L+            V
Sbjct: 479 YGRVDFRIDPK-GDVYFLEINPNCGM-WYS------EKDGGDFADLMVVGDKSWDHDRFV 530

Query: 294 EDA 296
           ++A
Sbjct: 531 DNA 533


>gi|72386711|ref|XP_843780.1| hypothetical protein [Trypanosoma brucei TREU927]
 gi|62359829|gb|AAX80258.1| hypothetical protein, conserved [Trypanosoma brucei]
 gi|70800312|gb|AAZ10221.1| hypothetical protein, conserved [Trypanosoma brucei brucei strain
           927/4 GUTat10.1]
          Length = 771

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 62/303 (20%), Positives = 115/303 (37%), Gaps = 45/303 (14%)

Query: 27  EDAGFKVSQI-----DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAI-----LELLE 76
           +   +  +++     D  R V  ++     D+ FN+  G  G+D     I     LE   
Sbjct: 243 DKNRYSFTEVAVRKDDAYRQVRELVTSNNFDVFFNLCDG--GKDEKRAGIDVLEALEEHN 300

Query: 77  IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL--ISPPYVIKPLK 134
             +T +   +   S  K+  K +V+  GV     +L+++    ++    +  P ++K L 
Sbjct: 301 AAFTGTDSRSFEPS--KIDMKVLVAGAGVNTPNFVLLDKTEGLAKKCRHLRFPVIVKHLS 358

Query: 135 GGSSLGIIVIKKDQSI-PLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
           G +S+GI    +  ++  L +   +     +  L+E+++ G E T     D+        
Sbjct: 359 GYASVGINKDNRCDTLDELKVKVGTFLKEFNHALVEEFIRGREGTVLACADSGSPHGVKV 418

Query: 194 --------VPKSDFYSYELKYSSLNSTHVLPAKIP--LDIYKEVQRLAFLAHQ-AIGCRG 242
                   +   D ++Y  K  S+       + +P     Y  +  +A  A Q  +   G
Sbjct: 419 FRPLMFNFLQNEDDFAYFDKKWSMECNDEACSFLPHNDPAYPRIIDMARNAFQHIMNGVG 478

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL---------LWMV 293
             R DF  DP    V++LEIN   GM   S         G  F +L+            V
Sbjct: 479 YGRVDFRIDPK-GDVYFLEINPNCGM-WYS------EKDGGDFADLMVVGDKSWDHDRFV 530

Query: 294 EDA 296
           ++A
Sbjct: 531 DNA 533


>gi|322499742|emb|CBZ34816.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 529

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 55/254 (21%), Positives = 100/254 (39%), Gaps = 25/254 (9%)

Query: 35  QIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAI-----LELLEIPYTHSGILASAL 89
           +ID  R+V  ++   K D+ FN+  G  G D     +     LE     +T +       
Sbjct: 17  KIDSYRTVRKLVTSNKYDVFFNLCDG--GRDEKRAGVDVVEALEEQNAAFTGTDSRGFEP 74

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKD 147
           S  K+  K +V S GV V   +L++     ++    +  P ++K L G +S+GI    + 
Sbjct: 75  S--KIDMKLMVGSSGVKVPNFVLLSNDESLAKKCRHLKFPVIVKHLSGYASVGIQKDSRC 132

Query: 148 QSIPLDLLQSSSW-NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA--------VPKSD 198
            ++     +   +    +  L+E+++ G E T     D                 +  +D
Sbjct: 133 DTLDQLRTKVRGFIKEYNHALVEEFIRGREGTVLACADPGSPFGVKVFKPLMFNFLQNND 192

Query: 199 FYSYELKY---SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ-AIGCRGISRSDFLFDPLS 254
            ++Y  K       +  +   A      Y  +  +A  A +  +   G  R DF  D L+
Sbjct: 193 DFAYFEKKWTMECGDQAYGFLASSDPA-YTAITDMARNAFKYIMSGVGYGRVDFRIDELT 251

Query: 255 RKVFWLEINVQPGM 268
            + ++LEIN   GM
Sbjct: 252 GEPYFLEINPNCGM 265


>gi|146089042|ref|XP_001466217.1| hypothetical protein [Leishmania infantum JPCM5]
 gi|134070319|emb|CAM68656.1| conserved hypothetical protein [Leishmania infantum JPCM5]
          Length = 529

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 55/254 (21%), Positives = 100/254 (39%), Gaps = 25/254 (9%)

Query: 35  QIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAI-----LELLEIPYTHSGILASAL 89
           +ID  R+V  ++   K D+ FN+  G  G D     +     LE     +T +       
Sbjct: 17  KIDSYRTVRKLVTSNKYDVFFNLCDG--GRDEKRAGVDVVEALEEQNAAFTGTDSRGFEP 74

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKD 147
           S  K+  K +V S GV V   +L++     ++    +  P ++K L G +S+GI    + 
Sbjct: 75  S--KIDMKLMVGSSGVKVPNFVLLSNDESLAKKCRHLKFPVIVKHLSGYASVGIQKDSRC 132

Query: 148 QSIPLDLLQSSSW-NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA--------VPKSD 198
            ++     +   +    +  L+E+++ G E T     D                 +  +D
Sbjct: 133 DTLDQLRTKVRGFIKEYNHALVEEFIRGREGTVLACADPGSPFGVKVFKPLMFNFLQNND 192

Query: 199 FYSYELKY---SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ-AIGCRGISRSDFLFDPLS 254
            ++Y  K       +  +   A      Y  +  +A  A +  +   G  R DF  D L+
Sbjct: 193 DFAYFEKKWTMECGDQAYGFLASSDPA-YTAITDMARNAFKYIMSGVGYGRVDFRIDELT 251

Query: 255 RKVFWLEINVQPGM 268
            + ++LEIN   GM
Sbjct: 252 GEPYFLEINPNCGM 265


>gi|213024194|ref|ZP_03338641.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Typhi str. 404ty]
          Length = 77

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 27/77 (35%), Positives = 39/77 (50%), Gaps = 1/77 (1%)

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279
                  +Q L   A +A+GC G  R D + D    + + LE N  PGMT  S+ P  A 
Sbjct: 1   EASQEAALQSLVLQAWKALGCTGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAAR 59

Query: 280 YAGYSFRELLLWMVEDA 296
            AG SF +L++ ++E A
Sbjct: 60  QAGMSFSQLVVRILELA 76


>gi|325003336|ref|ZP_08124448.1| D-alanine--D-alanine ligase domain-containing protein
           [Pseudonocardia sp. P1]
          Length = 346

 Score =  109 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 62/247 (25%), Positives = 109/247 (44%), Gaps = 28/247 (11%)

Query: 69  QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPY 128
           +A+ +L  IPY  +     AL  DK R++ VV+  GV V    ++          + PP 
Sbjct: 97  RALFDLQGIPYVGNTPDVMALGADKARARAVVAHAGVAVPAGEVLR---AGQAPTLRPPL 153

Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMG---- 183
           VIKP+   +S+G+ + + D++I + +  + +  H ++ L+EQ+V  G E+ CG++     
Sbjct: 154 VIKPVDTDNSVGVTLAETDETIEVAIKDALA--HSERALVEQFVPLGREVRCGIIDRGGD 211

Query: 184 --------------DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
                         D  + + +  + +S      L      S  V PA     +   V  
Sbjct: 212 LVGLPLEEYRMDPTDKPIRLADDKLDRSATGDLRLVAKDDRSWIVDPAD---PLTATVHD 268

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
            A  A++A+GCR     DF  DP + ++++LE  +       S+   MA  A    REL 
Sbjct: 269 AARRAYRALGCRHYGLFDFRVDP-NGRLYFLEAGLYCSFAHSSVVATMAHAAATPVRELF 327

Query: 290 LWMVEDA 296
             ++  A
Sbjct: 328 ADLISAA 334


>gi|37783473|gb|AAP41864.1| D-alanin-D-alanin ligase [Campylobacter jejuni]
          Length = 160

 Score =  109 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 37/163 (22%), Positives = 78/163 (47%), Gaps = 7/163 (4%)

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSL 139
               + ASALS +K  +K    S GV      ++ R   +S+  +S P +IKP + GSS+
Sbjct: 1   IGPRLEASALSFNKELTKLYAKSVGVKTLDYTIL-RKNQNSKEKLSFPCIIKPARLGSSI 59

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDVTEIAVP-K 196
           GI ++K ++ +     +   +   + L++E++ + I+     G M +     + I  P K
Sbjct: 60  GISIVKDEKDLEYA--KDVGFEFDNDLVVEEFKNNIKEYNLAGCMINDEFVFSIIEEPKK 117

Query: 197 SDFYSYELKYSSLNST-HVLPAKIPLDIYKEVQRLAFLAHQAI 238
            +F  +E KY S +    ++ A +  ++ ++++      +  +
Sbjct: 118 KEFLDFEQKYLSFSGHNELIEADLSEELKEKLKDSFKKIYNPL 160


>gi|302875946|ref|YP_003844579.1| D-alanine--D-alanine ligase domain-containing protein [Clostridium
           cellulovorans 743B]
 gi|307686656|ref|ZP_07629102.1| D-alanine--D-alanine ligase [Clostridium cellulovorans 743B]
 gi|302578803|gb|ADL52815.1| D-alanine--D-alanine ligase domain protein [Clostridium
           cellulovorans 743B]
          Length = 346

 Score =  109 bits (274), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 55/298 (18%), Positives = 122/298 (40%), Gaps = 30/298 (10%)

Query: 25  ALEDAGFKVSQIDV--DRSVGLVLAHLKPDLAFNVLH---------GNFGEDGLVQAILE 73
           ALE  G  V  + V  +  +   + + + DL ++ ++          N  E   V  IL 
Sbjct: 28  ALESYGHWVVVLYVESNEELIRHIKYNEYDLVWSSIYYFTDNIKCINNINEKTCVMDILR 87

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPL 133
            + + Y  +        ++K ++ +++   G+      ++ + +   +   +  + +KP 
Sbjct: 88  EMGVAYVGANAEVMKNMINKKKTIELLEKYGLSTHQQYVLEKGSAIPKLDFTKKWFVKPC 147

Query: 134 KGGSSLGI---IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS---L 187
               S G+    ++  ++ +   +      N+    L+E+Y+ G E T  ++G+     +
Sbjct: 148 FESESNGVSEKSIVHNEEELNERVQYILE-NYNQHALVEEYLSGDEYTTAIIGNKEKVTV 206

Query: 188 DVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
              +  V    +  Y +   +L +  +L  +IP D  +E+ +LA  A +A+G     R D
Sbjct: 207 LPIKNVVSSKAYERYPVITQNLKTDKMLSFEIPYDEMEELNKLAIEAAKALGVCDTVRID 266

Query: 248 FLFDPLSRKVFWLEINVQPGMTPV-SIF--------PEMAAYAGYSFRELLLWMVEDA 296
                 S +   +E+N  PG+ P+ S          P+ +     ++ EL+  +V  A
Sbjct: 267 IR-KNESGEFRVIELNGIPGLNPIKSRIFEIYNLYNPQNSKEQ--NYAELVNKIVIAA 321


>gi|224383914|gb|ACN42753.1| Ddl [Oenococcus oeni]
 gi|224383916|gb|ACN42754.1| Ddl [Oenococcus oeni]
          Length = 165

 Score =  109 bits (273), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 43/165 (26%), Positives = 72/165 (43%), Gaps = 24/165 (14%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVS-QIDVDRSVGLVLAHLKPDLAFNVLHGN 61
           VL G    E E          + L +    +   ID  R++       K D+ F  +HGN
Sbjct: 18  VLFG----EDE------DELLAGLPNKNADIFGPIDSIRNL-------KLDVLFPSVHGN 60

Query: 62  FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV-----NRF 116
            GEDG +  +  L+ IPY  SG+ A A+S DK+ +K++++  G+     I++     N+ 
Sbjct: 61  LGEDGTLAGLFRLMNIPYVGSGLRAHAISFDKVITKELMTVNGIRNTKYIVIFQNDKNKP 120

Query: 117 TMDS-QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160
             DS    +     +K    GSS+G+  +   +     L  S  +
Sbjct: 121 DWDSVSKQLGEVVFVKAANQGSSVGVSRVANAEEYENALRDSFQY 165


>gi|242047032|ref|XP_002461262.1| hypothetical protein SORBIDRAFT_02g043810 [Sorghum bicolor]
 gi|241924639|gb|EER97783.1| hypothetical protein SORBIDRAFT_02g043810 [Sorghum bicolor]
          Length = 603

 Score =  109 bits (272), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 52/265 (19%), Positives = 95/265 (35%), Gaps = 63/265 (23%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD--------------------- 39
           + ++  G S ER VSL+S ++    ++     V    +D                     
Sbjct: 12  VGLICCGPSGERGVSLNSARSVLDHIQGEDLVVRCYYIDSAMKAFATSPVQLYSNTPSDF 71

Query: 40  -----------RSVGLVLAHL--KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
                       S+     HL    D+ F V+HG FGEDG +Q +LE   +P+  +    
Sbjct: 72  DFKLESLAQGFDSLSDFAEHLATNVDIVFPVIHGKFGEDGGIQELLEKANVPFVGTPSKE 131

Query: 87  SALSMDK--MRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYV------IKPLKGGSS 138
              + DK    +K  + +       ++ +N+        I           +KP + GSS
Sbjct: 132 CQRAFDKKDKLAKPELEAW----FKTVNLNKENGKVIGWIGEGVTSDVLEQVKPTRAGSS 187

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI-ELTCGVMGDASLDVTEIAV--- 194
           +G++V            +  S    D+++IE +++G    T  V+   + + +E  V   
Sbjct: 188 IGMVVAYGVNDAAQKAEEIISEGIDDKVIIEVFLEGALSFTTIVVDVGTANNSEPVVLLP 247

Query: 195 -------------PKSDFYSYELKY 206
                         K   ++Y  KY
Sbjct: 248 KEVELQYSNSSDTNKDTIFNYRKKY 272



 Score = 72.5 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 31/135 (22%), Positives = 52/135 (38%), Gaps = 14/135 (10%)

Query: 31  FKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
           + +        V      +       V+HG  GEDG +Q +LE   +P+T  G + S   
Sbjct: 358 YSLVLRHTTEEVHAACVEVFMSCVLYVVHGGIGEDGTIQTLLESAGVPFTGPGPIVSRTC 417

Query: 91  MDKMRSKQV---VSSCGVPVCP-----------SILVNRFTMDSQHLISPPYVIKPLKGG 136
           +DK+ S      + S GV   P           S LV+ +      L +    +KP + G
Sbjct: 418 IDKVASSLAVDHLVSYGVRTIPKDVRATEEVLKSSLVDIWNELKAKLRTETVCVKPARDG 477

Query: 137 SSLGIIVIKKDQSIP 151
            S G+  +   + + 
Sbjct: 478 CSTGVERLCCPKDLE 492


>gi|215404958|ref|ZP_03417139.1| D-alanyl-alanine synthetase A [Mycobacterium tuberculosis 02_1987]
 gi|289746781|ref|ZP_06506159.1| D-alanyl-alanine synthetase A [Mycobacterium tuberculosis 02_1987]
 gi|289687309|gb|EFD54797.1| D-alanyl-alanine synthetase A [Mycobacterium tuberculosis 02_1987]
          Length = 157

 Score =  109 bits (272), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 38/149 (25%), Positives = 59/149 (39%), Gaps = 47/149 (31%)

Query: 5   MGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD------------ 52
            GG S+E  +S  S  +    L+   F V  + +  +   VL    PD            
Sbjct: 2   FGGRSNEHAISCVSAGSILRNLDSRRFDVIAVGITPAGSWVLTDANPDALTITNRELPQV 61

Query: 53  -----------------------------------LAFNVLHGNFGEDGLVQAILELLEI 77
                                              + F VLHG +GEDG +Q +LEL  +
Sbjct: 62  KSGSGTELALPADPRRGGQLVSLPPGAGEVLESVDVVFPVLHGPYGEDGTIQGLLELAGV 121

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVP 106
           PY  +G+LASA+ MDK  +K+++++   P
Sbjct: 122 PYVGAGVLASAVGMDKEFTKKLLAAIDFP 150


>gi|313192153|emb|CBX19936.1| D alanine-D alanine ligase [Clostridium perfringens]
          Length = 116

 Score =  107 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 32/116 (27%), Positives = 57/116 (49%), Gaps = 4/116 (3%)

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHV 214
               +  +  +++IE+Y+ G E+TC ++    L V  I  PK  F+    KY    +   
Sbjct: 5   AVLEALKYDTEVMIEEYIKGDEITCPIIDGKMLPVLAIK-PKGKFFDIASKYEDGGADEF 63

Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270
           +  K+  D++KEV+++A   ++ + C   +R D L        + LE+N  PGMT 
Sbjct: 64  I-VKLNEDLHKEVEKMALETYKLLKCDVYARVDMLV--KDNIPYVLEVNTLPGMTK 116


>gi|313192175|emb|CBX19947.1| D alanine-D alanine ligase [Clostridium perfringens]
          Length = 125

 Score =  107 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 33/131 (25%), Positives = 67/131 (51%), Gaps = 6/131 (4%)

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
            GGSS+   +++  +++   +L++    +  +++IE+Y+ G E+TC ++    L V  I 
Sbjct: 1   NGGSSVATTLVESKEAVKDAVLEAL--KYDTEVMIEEYIKGDEITCPIIDGKMLPVLAIK 58

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
            PK  F+    KY    +   +  K+  D++KEV+++A   ++ + C   +R D L    
Sbjct: 59  -PKGKFFDIASKYEDGGADEFI-VKLNEDLHKEVEKMALETYKLLKCDVYARVDMLV--K 114

Query: 254 SRKVFWLEINV 264
               + LE+N 
Sbjct: 115 DNIPYVLEVNT 125


>gi|84501852|ref|ZP_01000010.1| acetyl/propionyl CoA carboxylase alpha subunit [Oceanicola
           batsensis HTCC2597]
 gi|84389847|gb|EAQ02481.1| acetyl/propionyl CoA carboxylase alpha subunit [Oceanicola
           batsensis HTCC2597]
          Length = 489

 Score =  107 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 48/240 (20%), Positives = 100/240 (41%), Gaps = 15/240 (6%)

Query: 33  VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
            + +D+ + +      +  D      +G   E+    A LE   + +      A  L  D
Sbjct: 59  AAYLDISQ-IVAAAKKIGADAVHPG-YGFLSENAGFVAALEEAGVTFVGPTSQAIDLMGD 116

Query: 93  KMRSKQVVSSCGVPVCPSILVNRF---TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS 149
           K+R++  V   G PV PS + +      +D    +  P +IKP  GG   G+ V+++D +
Sbjct: 117 KVRARAFVEERGFPVAPSAIEDDDPATFVDRARAVGYPLLIKPSAGGGGKGMRVVREDSA 176

Query: 150 IPLDLLQS----SSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYEL 204
           +  ++  +      +    +L +E+Y++    +   VMGD   +V      +    S + 
Sbjct: 177 LETEIETARREGERYFGDGRLFVERYIESPRHIEVQVMGDGQGNVVHFWERE---CSIQR 233

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           ++  +      PA +  +  +E+   A    +A+  RG    +F++       ++LE+N 
Sbjct: 234 RFQKIIEETPSPA-LSPEQRQEICETAAGIARAVKYRGAGTVEFIY-ARDGAFYFLEMNT 291


>gi|13509009|emb|CAC35255.1| D-alanin-D-alanin ligase [Campylobacter jejuni]
          Length = 160

 Score =  107 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 36/163 (22%), Positives = 77/163 (47%), Gaps = 7/163 (4%)

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSL 139
               + AS LS +K  +K    S GV      ++ R   +S+  +S P +IKP + GSS+
Sbjct: 1   IGPRLEASVLSFNKELTKLYAKSVGVKTLDYTIL-RKNQNSKEKLSFPCIIKPARLGSSI 59

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDVTEIAVP-K 196
           GI ++K ++ +     +   +   + L++E++ + I+     G M +     + I  P K
Sbjct: 60  GISIVKDEKDLEYA--KDVGFEFDNDLVVEEFKNNIKEYNLAGCMINDEFVFSIIEEPKK 117

Query: 197 SDFYSYELKYSSLNST-HVLPAKIPLDIYKEVQRLAFLAHQAI 238
            +F  +E KY S +    ++ A +  ++ ++++      +  +
Sbjct: 118 KEFLDFEQKYLSFSGHNELIEADLSEELKEKLKDSFKKIYNPL 160


>gi|13509023|emb|CAC35262.1| D-alanin-D-alanin ligase [Campylobacter jejuni]
          Length = 160

 Score =  107 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 36/163 (22%), Positives = 77/163 (47%), Gaps = 7/163 (4%)

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSL 139
               + AS LS +K  +K    S GV      ++ R   +S+  +S P +IKP + GSS+
Sbjct: 1   IGPRLEASVLSFNKELTKLYAKSVGVKTLDYTML-RKNQNSKEKLSFPCIIKPARLGSSI 59

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDVTEIAVP-K 196
           GI ++K ++ +     +   +   + L++E++ + I+     G M +     + I  P K
Sbjct: 60  GISIVKDEKDLEYA--KDVGFEFDNDLVVEEFKNNIKEYNLAGCMINDEFVFSIIEEPKK 117

Query: 197 SDFYSYELKYSSLNST-HVLPAKIPLDIYKEVQRLAFLAHQAI 238
            +F  +E KY S +    ++ A +  ++ ++++      +  +
Sbjct: 118 KEFLDFEQKYLSFSGHNELIEADLSEELKEKLKDSFKKIYNPL 160


>gi|37783469|gb|AAP41862.1| D-alanin-D-alanin ligase [Campylobacter jejuni]
          Length = 160

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 36/163 (22%), Positives = 77/163 (47%), Gaps = 7/163 (4%)

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSL 139
               + AS LS +K  +K    S GV      ++ R   +S+  +S P +IKP + GSS+
Sbjct: 1   IGPRLEASVLSFNKELTKLYAKSVGVKTLDYTML-RKNQNSKEKLSFPCIIKPARLGSSI 59

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDVTEIAVP-K 196
           GI ++K ++ +     +   +   + L++E++ + I+     G M +     + I  P K
Sbjct: 60  GISIVKDEKDLEYA--KDVGFEFDNDLVVEEFKNNIKEYNLAGCMINDEFAFSIIEEPKK 117

Query: 197 SDFYSYELKYSSLNST-HVLPAKIPLDIYKEVQRLAFLAHQAI 238
            +F  +E KY S +    ++ A +  ++ ++++      +  +
Sbjct: 118 KEFLDFEQKYLSFSGHNELIEADLSEELKEKLKDSFKKIYNPL 160


>gi|49474255|ref|YP_032297.1| acetyl-CoA carboxylase biotin carboxylase subunit [Bartonella
           quintana str. Toulouse]
 gi|49239759|emb|CAF26144.1| biotin carboxylase [Bartonella quintana str. Toulouse]
          Length = 452

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 91/220 (41%), Gaps = 18/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     +LE  +I +         +  +K+ +K+     G+PV P    
Sbjct: 77  AVHPGYGFLSENAKFADVLEAHDITFIGPTAAHIRIMGNKIEAKKTAKKLGIPVVPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
            +      + +   I  P +IK   GG   G+ V++ ++   + L     ++++    D 
Sbjct: 137 PVTEEAEALRTASEIGYPVIIKASAGGGGRGMKVVRSEKEFAIALETTRSEAAAAFSDDS 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+Y++    +   V+GD +     +        S + ++  +      PA +     
Sbjct: 197 VYIEKYLEKPRHIEIQVIGDGTGSAVHLGERD---CSLQRRHQKIWEEATSPA-LNETER 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K++  +   A   +G RG    +FL+   + + +++E+N 
Sbjct: 253 KKIGDIVANACAQLGYRGAGTVEFLY--ENGEFYFIEMNT 290


>gi|13509029|emb|CAC35265.1| D-alanin-D-alanin ligase [Campylobacter jejuni]
          Length = 160

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 36/163 (22%), Positives = 77/163 (47%), Gaps = 7/163 (4%)

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSL 139
               + AS LS +K  +K    S GV      ++ R   +S+  +S P +IKP + GSS+
Sbjct: 1   IGPRLEASVLSFNKELTKLYAKSVGVKTLDYTML-RKNQNSKEKLSFPCIIKPARLGSSI 59

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDVTEIAVP-K 196
           GI ++K ++ +     +   +   + L++E++ + I+     G M +     + I  P K
Sbjct: 60  GISIVKDEKDLEYA--KDVGFEFDNDLVVEEFKNNIKEYNLAGCMINDEFVFSIIEEPKK 117

Query: 197 SDFYSYELKYSSLNST-HVLPAKIPLDIYKEVQRLAFLAHQAI 238
            +F  +E KY S +    ++ A +  ++ ++++      +  +
Sbjct: 118 KEFLDFEQKYLSFSGHNELIEANLSEELKEKLKDSFKKIYNPL 160


>gi|13509007|emb|CAC35254.1| D-alanin-D-alanin ligase [Campylobacter jejuni]
 gi|13509013|emb|CAC35257.1| D-alanin-D-alanin ligase [Campylobacter jejuni]
          Length = 160

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 35/163 (21%), Positives = 77/163 (47%), Gaps = 7/163 (4%)

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSL 139
               + AS LS +K  +K    S GV      ++ R   +S+  ++ P +IKP + GSS+
Sbjct: 1   IGPRLEASVLSFNKELTKLYAKSVGVKTLDYTML-RKNQNSKEKLNFPCIIKPARLGSSI 59

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDVTEIAVP-K 196
           GI ++K ++ +     +   +   + L++E++ + I+     G M +     + I  P K
Sbjct: 60  GISIVKDEKDLEYA--KDVGFEFDNDLVVEEFKNNIKEYNLAGCMINDEFVFSIIEEPKK 117

Query: 197 SDFYSYELKYSSLNST-HVLPAKIPLDIYKEVQRLAFLAHQAI 238
            +F  +E KY S +    ++ A +  ++ ++++      +  +
Sbjct: 118 KEFLDFEQKYLSFSGHNELIEADLSEELKEKLKDSFKKIYNPL 160


>gi|284036028|ref|YP_003385958.1| D-alanine--D-alanine ligase [Spirosoma linguale DSM 74]
 gi|283815321|gb|ADB37159.1| D-alanine--D-alanine ligase domain protein [Spirosoma linguale DSM
           74]
          Length = 551

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 43/203 (21%), Positives = 82/203 (40%), Gaps = 55/203 (27%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD--------------------- 39
           + +  GG + EREVS + G+   + L+   F+   + VD                     
Sbjct: 3   IGIFFGGPAREREVSFAGGRTALANLDKGLFEPVLVFVDGRGRFRLVSPDFLQSPSLHDA 62

Query: 40  -----------------RSVGLVLAHLKP-------DLAFNVLHGNFGEDGLVQAILELL 75
                             ++  +L  L+P       DLAF  +HG   EDG +Q +LE  
Sbjct: 63  LPQDSSGFSVYDESLAVDTLDAILPELRPEQFRDHFDLAFLAMHGPDCEDGAIQGLLEWH 122

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL----------IS 125
           ++PYT  G++ SA+ ++K+   ++++        +  ++R   +              + 
Sbjct: 123 KMPYTGPGLVGSAVGINKILQNELIALANGQKKKTATISRDDYEQADKAQFFQSLVEHLG 182

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQ 148
            P VIK    GSS+G+ ++++  
Sbjct: 183 LPIVIKAPHQGSSIGVAIVREAD 205



 Score = 97.5 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 35/142 (24%), Positives = 62/142 (43%), Gaps = 8/142 (5%)

Query: 164 DQLLIEQYVDGIELTCGVMGDA-----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
           D++L E+++ G E +CGV+ D      +L  TEI       + +E KY    +   +P +
Sbjct: 298 DEVLFEEFITGQEFSCGVIQDDDQVAIALPPTEIY--NVTSFDFESKYKLNTTKKRIPVE 355

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278
             L+  +++Q         +G    SR D    P    V   + N  PGM+P S+  +  
Sbjct: 356 TSLENNRKIQLAVAQVFTRLGINVYSRIDGFLTPA-GDVLLHDPNTIPGMSPSSLIFKQM 414

Query: 279 AYAGYSFRELLLWMVEDASCLR 300
           A  G +    L +++  +   R
Sbjct: 415 AEIGLNLANSLTYLIRQSLRER 436


>gi|71410983|ref|XP_807760.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70871830|gb|EAN85909.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 513

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 56/252 (22%), Positives = 96/252 (38%), Gaps = 23/252 (9%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGED----GLVQAILELLEIPYTHSGILASALSMDKMR 95
           R +  ++     D+ +N   G   ED     +VQA LE  ++P+T +      LS  K  
Sbjct: 59  RQIRQLVKSGAFDVFYNQCDGAIDEDKAGVEVVQA-LESFKVPFTGAISKYYELS--KPE 115

Query: 96  SKQVVSSCGVPVCPSILVNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIV-IKKDQSIPL 152
            K++   C V   P  ++       +    +  P ++K + G SS+G+    K      L
Sbjct: 116 MKRMAHYCAVKTAPYAVLEAGDNVRELCAALHFPLIVKHISGYSSVGMDKSCKVYDMDAL 175

Query: 153 DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS-------LDVTEIAVPKS-DFYSYEL 204
               +   +     L+E+++ G E T  V  DAS            +  P+  DF  + L
Sbjct: 176 KERVARFIDQYQSALVEEFISGDEATVLVCADASQPGGIRVFPPVMVQFPEGEDFKHFHL 235

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH-QAIGCRGISRSDFLFDPLSRKVFWLEIN 263
           K+ +                 ++  +A  A    +G  G  R D   D     V +LEIN
Sbjct: 236 KWETYEGMIWRLVSEDDPALPDIIHIARTAFLHMMGGVGYGRVDVRIDREKNTVVFLEIN 295

Query: 264 VQPGMTPVSIFP 275
              G+    ++P
Sbjct: 296 PNCGI----MYP 303


>gi|17983030|gb|AAL52244.1| biotin carboxylase [Brucella melitensis bv. 1 str. 16M]
          Length = 459

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 88/221 (39%), Gaps = 20/221 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---- 109
            +H  +G   E+     ILE  +I +         +  DK+ +K+     G+PV P    
Sbjct: 84  AIHPGYGFLSENAKFAEILEAHDITFIGPTASHIRIMGDKIEAKRTAKRLGIPVVPGSDG 143

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
            +            I  P +IK   GG   G+ V +  + +P+ L     ++ +    D 
Sbjct: 144 GVTDEVEAARIAKEIGYPVIIKASAGGGGRGMKVARSAEELPIALATARSEAGAAFGDDA 203

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELK-YSSLNSTHVLPAKIPLDI 223
           + IE+Y++    +   VMGD + +   +            K +   NS    PA +  + 
Sbjct: 204 VYIEKYLEKPRHIEVQVMGDGAGNAVHLGERDCSLQRRHQKVWEEGNS----PA-LNAEA 258

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +++  +   A   +G RG    +FL+     + +++E+N 
Sbjct: 259 REKIGMICANACAELGYRGAGTIEFLY--EDGEFYFIEMNT 297


>gi|326408927|gb|ADZ65992.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella
           melitensis M28]
 gi|326538643|gb|ADZ86858.1| acetyl-CoA carboxylase, biotin carboxylase [Brucella melitensis
           M5-90]
          Length = 413

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 88/221 (39%), Gaps = 20/221 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---- 109
            +H  +G   E+     ILE  +I +         +  DK+ +K+     G+PV P    
Sbjct: 38  AIHPGYGFLSENAKFAEILEAHDITFIGPTASHIRIMGDKIEAKRTAKRLGIPVVPGSDG 97

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
            +            I  P +IK   GG   G+ V +  + +P+ L     ++ +    D 
Sbjct: 98  GVTDEVEAARIAKEIGYPVIIKASAGGGGRGMKVARSAEELPIALATARSEAGAAFGDDA 157

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELK-YSSLNSTHVLPAKIPLDI 223
           + IE+Y++    +   VMGD + +   +            K +   NS    PA +  + 
Sbjct: 158 VYIEKYLEKPRHIEVQVMGDGAGNAVHLGERDCSLQRRHQKVWEEGNS----PA-LNAEA 212

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +++  +   A   +G RG    +FL+     + +++E+N 
Sbjct: 213 REKIGMICANACAELGYRGAGTIEFLY--EDGEFYFIEMNT 251


>gi|13509019|emb|CAC35260.1| D-alanin-D-alanin ligase [Campylobacter jejuni]
 gi|37783471|gb|AAP41863.1| D-alanin-D-alanin ligase [Campylobacter jejuni]
          Length = 160

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 35/163 (21%), Positives = 77/163 (47%), Gaps = 7/163 (4%)

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSL 139
               + AS LS +K  +K    S GV      ++ R   +S+  ++ P +IKP + GSS+
Sbjct: 1   IGPRLEASVLSFNKELTKLYAKSVGVKTLDYTML-RKNQNSKEKLNFPCIIKPARLGSSI 59

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDVTEIAVP-K 196
           GI ++K ++ +     +   +   + L++E++ + I+     G M +     + I  P K
Sbjct: 60  GISIVKDEKDLEYA--KDVGFEFDNDLVVEEFKNNIKEYNLAGCMINDEFVFSIIEEPKK 117

Query: 197 SDFYSYELKYSSLNST-HVLPAKIPLDIYKEVQRLAFLAHQAI 238
            +F  +E KY S +    ++ A +  ++ ++++      +  +
Sbjct: 118 KEFLDFEQKYLSFSGHNELIEANLSEELKEKLKDSFKKIYNPL 160


>gi|13509011|emb|CAC35256.1| D-alanin-D-alanin ligase [Campylobacter jejuni]
 gi|13509027|emb|CAC35264.1| D-alanin-D-alanin ligase [Campylobacter jejuni]
 gi|37783475|gb|AAP41865.1| D-alanin-D-alanin ligase [Campylobacter jejuni]
          Length = 160

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 36/163 (22%), Positives = 77/163 (47%), Gaps = 7/163 (4%)

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSL 139
               + AS LS +K  +K    S GV      +V +   +S+  +S P +IKP + GSS+
Sbjct: 1   IGPRLEASVLSFNKELTKLYAKSVGVKTLDYTMVRKG-QNSKEKLSFPCIIKPARLGSSI 59

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDVTEIAVP-K 196
           GI ++K ++ +     +   +   + L++E++ + I+     G M +     + I  P K
Sbjct: 60  GISIVKDEKDLEYA--KDVGFEFDNDLVVEEFKNNIKEYNLAGCMINDEFVFSIIEEPKK 117

Query: 197 SDFYSYELKYSSLNST-HVLPAKIPLDIYKEVQRLAFLAHQAI 238
            +F  +E KY S +    ++ A +  ++ ++++      +  +
Sbjct: 118 KEFLDFEQKYLSFSGHNELIEANLSEELKEKLKDSFKKIYNPL 160


>gi|313192169|emb|CBX19944.1| D alanine-D alanine ligase [Clostridium perfringens]
          Length = 125

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 32/131 (24%), Positives = 66/131 (50%), Gaps = 6/131 (4%)

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
            GGSS+   +++  + +   +L++    +  +++IE+Y+ G E+TC ++    L V  I 
Sbjct: 1   NGGSSVATTLVESKEGVKDAVLEAL--KYDTEVMIEEYIKGDEITCPIIDGKMLPVLAIK 58

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
            PK  F+    KY    +   +  ++  D++KEV+++A   ++ + C   +R D L    
Sbjct: 59  -PKGKFFDIASKYEDGGADEFI-VELNEDLHKEVEKMALETYKLLKCDVYARVDMLV--K 114

Query: 254 SRKVFWLEINV 264
               + LE+N 
Sbjct: 115 DNIPYVLEVNT 125


>gi|237815337|ref|ZP_04594335.1| acetyl-CoA carboxylase, biotin carboxylase [Brucella abortus str.
           2308 A]
 gi|237790174|gb|EEP64384.1| acetyl-CoA carboxylase, biotin carboxylase [Brucella abortus str.
           2308 A]
          Length = 459

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 88/221 (39%), Gaps = 20/221 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---- 109
            +H  +G   E+     ILE  +I +         +  DK+ +K+     G+PV P    
Sbjct: 84  AIHPGYGFLSENAKFAEILEAHDITFIGPTASHIRIMGDKIEAKRTAKRLGIPVVPGSDG 143

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
            +            I  P +IK   GG   G+ V +  + +P+ L     ++ +    D 
Sbjct: 144 GVTDEVEAARIAKEIGYPVIIKASAGGGGRGMKVARSAEELPIALATARSEAGAAFGDDA 203

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELK-YSSLNSTHVLPAKIPLDI 223
           + IE+Y++    +   VMGD + +   +            K +   NS    PA +  + 
Sbjct: 204 VYIEKYLEKPRHIEVQVMGDGAGNAVHLGERDCSLQRRHQKVWEEGNS----PA-LNAEA 258

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +++  +   A   +G RG    +FL+     + +++E+N 
Sbjct: 259 REKIGMICANACAELGYRGAGTIEFLY--EDGEFYFIEMNT 297


>gi|124358352|gb|ABN05627.1| vancomycin resistance protein A [Enterococcus faecium]
          Length = 131

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 36/132 (27%), Positives = 65/132 (49%), Gaps = 9/132 (6%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
               + P  +KP + GSS G+  +     +  D    S+  +  ++LIEQ V G E+ C 
Sbjct: 2   AATFTYPVFVKPARSGSSFGVKKVNSADEL--DYAIESARQYDSKILIEQAVSGCEVGCA 59

Query: 181 VMGD-ASLDVTEIAVPKSDFYSY------ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           V+G+ A+L V E+   +  +  +      E +  S N+   +PA +  +    +Q  A  
Sbjct: 60  VLGNSAALVVGEVDQIRLQYGIFRIHQEVEPEKGSENAVITVPADLSAEERGRIQETAKK 119

Query: 234 AHQAIGCRGISR 245
            ++A+GCRG++R
Sbjct: 120 IYKALGCRGLAR 131


>gi|294852261|ref|ZP_06792934.1| acetyl-CoA carboxylase [Brucella sp. NVSL 07-0026]
 gi|294820850|gb|EFG37849.1| acetyl-CoA carboxylase [Brucella sp. NVSL 07-0026]
          Length = 413

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 88/221 (39%), Gaps = 20/221 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---- 109
            +H  +G   E+     ILE  +I +         +  DK+ +K+     G+PV P    
Sbjct: 38  AIHPGYGFLSENAKFAEILEAHDITFIGPTASHIRIMGDKIEAKRTAKRLGIPVVPGSDG 97

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
            +            I  P +IK   GG   G+ V +  + +P+ L     ++ +    D 
Sbjct: 98  GVTDEVEAARIAKEIGYPVIIKASAGGGGRGMKVARSAEELPIALATARSEAGAAFGDDA 157

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELK-YSSLNSTHVLPAKIPLDI 223
           + IE+Y++    +   VMGD + +   +            K +   NS    PA +  + 
Sbjct: 158 VYIEKYLEKPRHIEVQVMGDGAGNAVHLGERDCSLQRRHQKVWEEGNS----PA-LNAEA 212

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +++  +   A   +G RG    +FL+     + +++E+N 
Sbjct: 213 REKIGMICANACAELGYRGAGTIEFLY--EDGEFYFIEMNT 251


>gi|256113452|ref|ZP_05454293.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella
           melitensis bv. 3 str. Ether]
 gi|265994840|ref|ZP_06107397.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella
           melitensis bv. 3 str. Ether]
 gi|262765953|gb|EEZ11742.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella
           melitensis bv. 3 str. Ether]
          Length = 452

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 88/221 (39%), Gaps = 20/221 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---- 109
            +H  +G   E+     ILE  +I +         +  DK+ +K+     G+PV P    
Sbjct: 77  AIHPGYGFLSENAKFAEILEAHDITFIGPTASHIRIMGDKIEAKRTAKRLGIPVVPGSDG 136

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
            +            I  P +IK   GG   G+ V +  + +P+ L     ++ +    D 
Sbjct: 137 GVTDEVEAARIAKEIGYPVIIKASAGGGGRGMKVARSAEELPIALATARSEAGAAFGDDA 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELK-YSSLNSTHVLPAKIPLDI 223
           + IE+Y++    +   VMGD + +   +            K +   NS    PA +  + 
Sbjct: 197 VYIEKYLEKPRHIEVQVMGDGAGNAVHLGERDCSLQRRHQKVWEEGNS----PA-LNAEA 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +++  +   A   +G RG    +FL+     + +++E+N 
Sbjct: 252 REKIGMICANACAELGYRGAGTIEFLY--EDGEFYFIEMNT 290


>gi|225627395|ref|ZP_03785432.1| acetyl-CoA carboxylase, biotin carboxylase [Brucella ceti str.
           Cudo]
 gi|225617400|gb|EEH14445.1| acetyl-CoA carboxylase, biotin carboxylase [Brucella ceti str.
           Cudo]
          Length = 459

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 88/221 (39%), Gaps = 20/221 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---- 109
            +H  +G   E+     ILE  +I +         +  DK+ +K+     G+PV P    
Sbjct: 84  AIHPGYGFLSENAKFAEILEAHDITFIGPTASHIRIMGDKIEAKRTAKRLGIPVVPGSDG 143

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
            +            I  P +IK   GG   G+ V +  + +P+ L     ++ +    D 
Sbjct: 144 GVTDEVEAARIAKEIGYPVIIKASAGGGGRGMKVARSAEELPIALATARSEAGAAFGDDA 203

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELK-YSSLNSTHVLPAKIPLDI 223
           + IE+Y++    +   VMGD + +   +            K +   NS    PA +  + 
Sbjct: 204 VYIEKYLEKPRHIEVQVMGDGAGNAVHLGERDCSLQRRHQKVWEEGNS----PA-LNAEA 258

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +++  +   A   +G RG    +FL+     + +++E+N 
Sbjct: 259 REKIGMICANACAELGYRGAGTIEFLY--EDGEFYFIEMNT 297


>gi|161511139|ref|NP_539980.2| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella
           melitensis bv. 1 str. 16M]
 gi|225852418|ref|YP_002732651.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella
           melitensis ATCC 23457]
 gi|256044579|ref|ZP_05447483.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella
           melitensis bv. 1 str. Rev.1]
 gi|256264084|ref|ZP_05466616.1| acetyl-CoA carboxylase [Brucella melitensis bv. 2 str. 63/9]
 gi|260563930|ref|ZP_05834416.1| acetyl-CoA carboxylase [Brucella melitensis bv. 1 str. 16M]
 gi|265991003|ref|ZP_06103560.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella
           melitensis bv. 1 str. Rev.1]
 gi|225640783|gb|ACO00697.1| acetyl-CoA carboxylase, biotin carboxylase [Brucella melitensis
           ATCC 23457]
 gi|260153946|gb|EEW89038.1| acetyl-CoA carboxylase [Brucella melitensis bv. 1 str. 16M]
 gi|263001787|gb|EEZ14362.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella
           melitensis bv. 1 str. Rev.1]
 gi|263094288|gb|EEZ18149.1| acetyl-CoA carboxylase [Brucella melitensis bv. 2 str. 63/9]
          Length = 452

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 88/221 (39%), Gaps = 20/221 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---- 109
            +H  +G   E+     ILE  +I +         +  DK+ +K+     G+PV P    
Sbjct: 77  AIHPGYGFLSENAKFAEILEAHDITFIGPTASHIRIMGDKIEAKRTAKRLGIPVVPGSDG 136

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
            +            I  P +IK   GG   G+ V +  + +P+ L     ++ +    D 
Sbjct: 137 GVTDEVEAARIAKEIGYPVIIKASAGGGGRGMKVARSAEELPIALATARSEAGAAFGDDA 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELK-YSSLNSTHVLPAKIPLDI 223
           + IE+Y++    +   VMGD + +   +            K +   NS    PA +  + 
Sbjct: 197 VYIEKYLEKPRHIEVQVMGDGAGNAVHLGERDCSLQRRHQKVWEEGNS----PA-LNAEA 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +++  +   A   +G RG    +FL+     + +++E+N 
Sbjct: 252 REKIGMICANACAELGYRGAGTIEFLY--EDGEFYFIEMNT 290


>gi|322822844|gb|EFZ28784.1| hypothetical protein TCSYLVIO_4975 [Trypanosoma cruzi]
          Length = 514

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 56/252 (22%), Positives = 96/252 (38%), Gaps = 23/252 (9%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGED----GLVQAILELLEIPYTHSGILASALSMDKMR 95
           R +  ++     D+ +N   G   ED     +VQA LE  ++P+T +      LS  K  
Sbjct: 60  RQIRQLVKSGAFDVFYNQCDGAIDEDKAGVEVVQA-LESFKVPFTGAISKYYELS--KPE 116

Query: 96  SKQVVSSCGVPVCPSILVNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIV-IKKDQSIPL 152
            K++   C V   P  ++       +    +  P ++K + G SS+G+    K      L
Sbjct: 117 MKRMAHYCAVKTAPYAVLEAGDNVRELCAALHFPLIVKHISGYSSVGMDKSCKVYDMDAL 176

Query: 153 DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS-------LDVTEIAVPKS-DFYSYEL 204
               +   +     L+E+++ G E T  V  DAS            +  P+  DF  + L
Sbjct: 177 KERVARFIDQYQSALVEEFISGDEATVLVCADASQPGGIRVFPPVMVQFPEGEDFKHFHL 236

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH-QAIGCRGISRSDFLFDPLSRKVFWLEIN 263
           K+ +                 ++  +A  A    +G  G  R D   D     V +LEIN
Sbjct: 237 KWETYEGMIWRLVSEDDPALPDIIHIARTAFLHMMGGVGYGRVDVRIDREKNSVVFLEIN 296

Query: 264 VQPGMTPVSIFP 275
              G+    ++P
Sbjct: 297 PNCGI----MYP 304


>gi|313192183|emb|CBX19951.1| D alanine-D alanine ligase [Clostridium perfringens]
          Length = 124

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 32/130 (24%), Positives = 66/130 (50%), Gaps = 6/130 (4%)

Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK 196
           SS+   +++  +++   +L++    +  +++IE+Y+ G E+TC ++    L V  I  PK
Sbjct: 1   SSVATTLVESKEAVKDAVLEAL--KYDTEVMIEEYIKGDEITCPIIEGKMLPVLAIK-PK 57

Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256
             F+    KY    +   +  K+  D++KEV+++A   ++ + C   +R D L       
Sbjct: 58  GKFFDIASKYEDGGADEFI-VKLNEDLHKEVEKMALETYKLLKCDVYARVDMLV--KDNI 114

Query: 257 VFWLEINVQP 266
            + LE+N  P
Sbjct: 115 PYVLEVNTLP 124


>gi|306840400|ref|ZP_07473165.1| acetyl-CoA carboxylase, biotin carboxylase [Brucella sp. BO2]
 gi|306289638|gb|EFM60842.1| acetyl-CoA carboxylase, biotin carboxylase [Brucella sp. BO2]
          Length = 436

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 88/221 (39%), Gaps = 20/221 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---- 109
            +H  +G   E+     ILE  +I +         +  DK+ +K+     G+PV P    
Sbjct: 61  AIHPGYGFLSENAKFAEILEAHDITFIGPTASHIRIMGDKIEAKRTAKRLGIPVVPGSDG 120

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
            +            I  P +IK   GG   G+ V +  + +P+ L     ++ +    D 
Sbjct: 121 GVTDEVEAARIAKEIGYPVIIKASAGGGGRGMKVARSAEELPIALATARSEAGAAFGDDA 180

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELK-YSSLNSTHVLPAKIPLDI 223
           + IE+Y++    +   VMGD + +   +            K +   NS    PA +  + 
Sbjct: 181 VYIEKYLEKPRHIEVQVMGDGAGNAVHLGERDCSLQRRHQKVWEEGNS----PA-LNAEA 235

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +++  +   A   +G RG    +FL+     + +++E+N 
Sbjct: 236 REKIGMICANACAELGYRGAGTIEFLY--EDGEFYFIEMNT 274


>gi|256159627|ref|ZP_05457389.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella ceti
           M490/95/1]
 gi|256254907|ref|ZP_05460443.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella ceti
           B1/94]
 gi|261222089|ref|ZP_05936370.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella ceti
           B1/94]
 gi|265998054|ref|ZP_06110611.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella ceti
           M490/95/1]
 gi|260920673|gb|EEX87326.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella ceti
           B1/94]
 gi|262552522|gb|EEZ08512.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella ceti
           M490/95/1]
          Length = 452

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 88/221 (39%), Gaps = 20/221 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---- 109
            +H  +G   E+     ILE  +I +         +  DK+ +K+     G+PV P    
Sbjct: 77  AIHPGYGFLSENAKFAEILEAHDITFIGPTASHIRIMGDKIEAKRTAKRLGIPVVPGSDG 136

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
            +            I  P +IK   GG   G+ V +  + +P+ L     ++ +    D 
Sbjct: 137 GVTDEVEAARIAKEIGYPVIIKASAGGGGRGMKVARSAEELPIALATARSEAGAAFGDDA 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELK-YSSLNSTHVLPAKIPLDI 223
           + IE+Y++    +   VMGD + +   +            K +   NS    PA +  + 
Sbjct: 197 VYIEKYLEKPRHIEVQVMGDGAGNAVHLGERDCSLQRRHQKVWEEGNS----PA-LNAEA 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +++  +   A   +G RG    +FL+     + +++E+N 
Sbjct: 252 REKIGMICANACAELGYRGAGTIEFLY--EDGEFYFIEMNT 290


>gi|256419162|ref|YP_003119815.1| phosphoribosylglycinamide synthetase [Chitinophaga pinensis DSM
           2588]
 gi|256034070|gb|ACU57614.1| phosphoribosylglycinamide synthetase [Chitinophaga pinensis DSM
           2588]
          Length = 353

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 71/329 (21%), Positives = 128/329 (38%), Gaps = 48/329 (14%)

Query: 6   GGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFG-- 63
           GG S        SG   A AL +    VS   +   + + L  + PD    +LH      
Sbjct: 30  GGYS-------DSGADIAYALREKQVPVSTPVIHPQLMIDLDWVFPDTEAGILHALSKGA 82

Query: 64  ---------EDGL-VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
                     +G  V+A L+   I         + L  DK  + +++    +P+ P+IL+
Sbjct: 83  QVLWLNTILYNGHPVEAFLKK-GIAAVGQLPRNTDLYDDKWTTNKLLQKNNLPIPPAILI 141

Query: 114 NRFTM-DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN-HGDQLLIEQY 171
           N+  + D Q   S P V KP++G  S G+ V+     +   L +  + + +G  + +E++
Sbjct: 142 NKDNLHDYQLHFSFPAVAKPIRGRGSDGVQVVDTADGLHKVLKEMFAEDKYGTAVYVEKF 201

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFY-----------SYELKYS-----SLNSTHVL 215
           + G E+T  VM      + +I   K +++                Y+       NS  + 
Sbjct: 202 LPGREVTITVMPPGKYMIRDICQEKINYWSLPPVERFNHEDGVAPYNGTVAVVNNSKVLD 261

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT------ 269
            A++       + +    A   +G +   R D   D   R  F  ++N++P MT      
Sbjct: 262 DAQLQSPAIITLCKQCESAAALVGAKAPVRIDCRQDEQGR-YFLFDLNMKPNMTGASRPH 320

Query: 270 ---PVSIFPEMAAYAGYSFRELLLWMVED 295
                S+    A   G++F +LL  M+  
Sbjct: 321 RMDQDSLSALAARKIGWTFADLLENMLRQ 349


>gi|163843176|ref|YP_001627580.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella suis
           ATCC 23445]
 gi|163673899|gb|ABY38010.1| acetyl-CoA carboxylase, biotin carboxylase [Brucella suis ATCC
           23445]
          Length = 452

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 88/221 (39%), Gaps = 20/221 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---- 109
            +H  +G   E+     ILE  +I +         +  DK+ +K+     G+PV P    
Sbjct: 77  AIHPGYGFLSENAKFAEILEAHDITFIGPTASHIRIMGDKIEAKRTAKRLGIPVVPGSDG 136

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
            +            I  P +IK   GG   G+ V +  + +P+ L     ++ +    D 
Sbjct: 137 GVTDEVEAARIAKEIGYPVIIKASAGGGGRGMKVARSAEELPIALATARSEAGAAFGDDA 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELK-YSSLNSTHVLPAKIPLDI 223
           + IE+Y++    +   VMGD + +   +            K +   NS    PA +  + 
Sbjct: 197 VYIEKYLEKPRHIEVQVMGDGAGNAVHLGERDCSLQRRHQKVWEEGNS----PA-LNAEA 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +++  +   A   +G RG    +FL+     + +++E+N 
Sbjct: 252 REKIGMICANACAELGYRGAGTIEFLY--EDGEFYFIEMNT 290


>gi|254706885|ref|ZP_05168713.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella
           pinnipedialis M163/99/10]
 gi|254710007|ref|ZP_05171818.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella
           pinnipedialis B2/94]
 gi|254716933|ref|ZP_05178744.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella ceti
           M13/05/1]
 gi|256031502|ref|ZP_05445116.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella
           pinnipedialis M292/94/1]
 gi|260168635|ref|ZP_05755446.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella sp.
           F5/99]
 gi|261218739|ref|ZP_05933020.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella ceti
           M13/05/1]
 gi|261314350|ref|ZP_05953547.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella
           pinnipedialis M163/99/10]
 gi|261317555|ref|ZP_05956752.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella
           pinnipedialis B2/94]
 gi|261758108|ref|ZP_06001817.1| acetyl-CoA carboxylase [Brucella sp. F5/99]
 gi|265988589|ref|ZP_06101146.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella
           pinnipedialis M292/94/1]
 gi|260923828|gb|EEX90396.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella ceti
           M13/05/1]
 gi|261296778|gb|EEY00275.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella
           pinnipedialis B2/94]
 gi|261303376|gb|EEY06873.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella
           pinnipedialis M163/99/10]
 gi|261738092|gb|EEY26088.1| acetyl-CoA carboxylase [Brucella sp. F5/99]
 gi|264660786|gb|EEZ31047.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella
           pinnipedialis M292/94/1]
          Length = 452

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 88/221 (39%), Gaps = 20/221 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---- 109
            +H  +G   E+     ILE  +I +         +  DK+ +K+     G+PV P    
Sbjct: 77  AIHPGYGFLSENAKFAEILEAHDITFIGPTASHIRIMGDKIEAKRTAKRLGIPVVPGSDG 136

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
            +            I  P +IK   GG   G+ V +  + +P+ L     ++ +    D 
Sbjct: 137 GVTDEVEAARIAKEIGYPVIIKASAGGGGRGMKVARSAEELPIALATARSEAGAAFGDDA 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELK-YSSLNSTHVLPAKIPLDI 223
           + IE+Y++    +   VMGD + +   +            K +   NS    PA +  + 
Sbjct: 197 VYIEKYLEKPRHIEVQVMGDGAGNAVHLGERDCSLQRRHQKVWEEGNS----PA-LNAEA 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +++  +   A   +G RG    +FL+     + +++E+N 
Sbjct: 252 REKIGMICANACAELGYRGAGTIEFLY--EDGEFYFIEMNT 290


>gi|23501792|ref|NP_697919.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella suis
           1330]
 gi|62289849|ref|YP_221642.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella abortus
           bv. 1 str. 9-941]
 gi|82699775|ref|YP_414349.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella
           melitensis biovar Abortus 2308]
 gi|148560130|ref|YP_001258883.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella ovis
           ATCC 25840]
 gi|161618864|ref|YP_001592751.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella canis
           ATCC 23365]
 gi|189024091|ref|YP_001934859.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella abortus
           S19]
 gi|254693638|ref|ZP_05155466.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella abortus
           bv. 3 str. Tulya]
 gi|254697290|ref|ZP_05159118.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella abortus
           bv. 2 str. 86/8/59]
 gi|254701670|ref|ZP_05163498.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella suis
           bv. 5 str. 513]
 gi|254704213|ref|ZP_05166041.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella suis
           bv. 3 str. 686]
 gi|254719009|ref|ZP_05180820.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella sp.
           83/13]
 gi|254730188|ref|ZP_05188766.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella abortus
           bv. 4 str. 292]
 gi|256061011|ref|ZP_05451168.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella
           neotomae 5K33]
 gi|256257405|ref|ZP_05462941.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella abortus
           bv. 9 str. C68]
 gi|256369334|ref|YP_003106842.1| acetyl-CoA carboxylase [Brucella microti CCM 4915]
 gi|260545404|ref|ZP_05821145.1| acetyl-CoA carboxylase [Brucella abortus NCTC 8038]
 gi|260566539|ref|ZP_05837009.1| acetyl-CoA carboxylase [Brucella suis bv. 4 str. 40]
 gi|260757877|ref|ZP_05870225.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella abortus
           bv. 4 str. 292]
 gi|260761700|ref|ZP_05874043.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella abortus
           bv. 2 str. 86/8/59]
 gi|260883680|ref|ZP_05895294.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella abortus
           bv. 9 str. C68]
 gi|261213904|ref|ZP_05928185.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella abortus
           bv. 3 str. Tulya]
 gi|261325011|ref|ZP_05964208.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella
           neotomae 5K33]
 gi|261752222|ref|ZP_05995931.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella suis
           bv. 5 str. 513]
 gi|261754881|ref|ZP_05998590.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella suis
           bv. 3 str. 686]
 gi|265983999|ref|ZP_06096734.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella sp.
           83/13]
 gi|297248254|ref|ZP_06931972.1| acetyl-CoA carboxylase, biotin carboxylase [Brucella abortus bv. 5
           str. B3196]
 gi|306840104|ref|ZP_07472890.1| acetyl-CoA carboxylase, biotin carboxylase [Brucella sp. NF 2653]
 gi|306843804|ref|ZP_07476402.1| acetyl-CoA carboxylase, biotin carboxylase [Brucella sp. BO1]
 gi|23347723|gb|AAN29834.1| acetyl-CoA carboxylase, biotin carboxylase [Brucella suis 1330]
 gi|62195981|gb|AAX74281.1| AccC, acetyl-CoA carboxylase, biotin carboxylase [Brucella abortus
           bv. 1 str. 9-941]
 gi|82615876|emb|CAJ10880.1| Acetyl-CoA carboxylase, biotin carboxylase:Carbamoyl-phosphate
           synthase L chain, ATP-binding:Carbamoyl-phosphate
           synthetase l [Brucella melitensis biovar Abortus 2308]
 gi|148371387|gb|ABQ61366.1| acetyl-CoA carboxylase, biotin carboxylase [Brucella ovis ATCC
           25840]
 gi|161335675|gb|ABX61980.1| Acetyl-CoA carboxylase [Brucella canis ATCC 23365]
 gi|189019663|gb|ACD72385.1| acetyl-CoA carboxylase [Brucella abortus S19]
 gi|255999494|gb|ACU47893.1| acetyl-CoA carboxylase [Brucella microti CCM 4915]
 gi|260096811|gb|EEW80686.1| acetyl-CoA carboxylase [Brucella abortus NCTC 8038]
 gi|260156057|gb|EEW91137.1| acetyl-CoA carboxylase [Brucella suis bv. 4 str. 40]
 gi|260668195|gb|EEX55135.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella abortus
           bv. 4 str. 292]
 gi|260672132|gb|EEX58953.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella abortus
           bv. 2 str. 86/8/59]
 gi|260873208|gb|EEX80277.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella abortus
           bv. 9 str. C68]
 gi|260915511|gb|EEX82372.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella abortus
           bv. 3 str. Tulya]
 gi|261300991|gb|EEY04488.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella
           neotomae 5K33]
 gi|261741975|gb|EEY29901.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella suis
           bv. 5 str. 513]
 gi|261744634|gb|EEY32560.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella suis
           bv. 3 str. 686]
 gi|264662591|gb|EEZ32852.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella sp.
           83/13]
 gi|297175423|gb|EFH34770.1| acetyl-CoA carboxylase, biotin carboxylase [Brucella abortus bv. 5
           str. B3196]
 gi|306275882|gb|EFM57598.1| acetyl-CoA carboxylase, biotin carboxylase [Brucella sp. BO1]
 gi|306404832|gb|EFM61125.1| acetyl-CoA carboxylase, biotin carboxylase [Brucella sp. NF 2653]
          Length = 452

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 88/221 (39%), Gaps = 20/221 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---- 109
            +H  +G   E+     ILE  +I +         +  DK+ +K+     G+PV P    
Sbjct: 77  AIHPGYGFLSENAKFAEILEAHDITFIGPTASHIRIMGDKIEAKRTAKRLGIPVVPGSDG 136

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
            +            I  P +IK   GG   G+ V +  + +P+ L     ++ +    D 
Sbjct: 137 GVTDEVEAARIAKEIGYPVIIKASAGGGGRGMKVARSAEELPIALATARSEAGAAFGDDA 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELK-YSSLNSTHVLPAKIPLDI 223
           + IE+Y++    +   VMGD + +   +            K +   NS    PA +  + 
Sbjct: 197 VYIEKYLEKPRHIEVQVMGDGAGNAVHLGERDCSLQRRHQKVWEEGNS----PA-LNAEA 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +++  +   A   +G RG    +FL+     + +++E+N 
Sbjct: 252 REKIGMICANACAELGYRGAGTIEFLY--EDGEFYFIEMNT 290


>gi|71406882|ref|XP_805945.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70869544|gb|EAN84094.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 789

 Score =  106 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 51/266 (19%), Positives = 105/266 (39%), Gaps = 29/266 (10%)

Query: 27  EDAGFKVSQIDVDRS-----VGLVLAHLKPDLAFNVLHGNFGEDGLVQAI-----LELLE 76
           +   +  +++ + +S     V  ++     D+ FN+  G  G+D     +     LE   
Sbjct: 265 DKKRYTFTEVSLRKSESYLRVRELVTSNNFDVFFNLCDG--GKDEKRAGVEVVEALEEHN 322

Query: 77  IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL--ISPPYVIKPLK 134
             +T +   +   S  K+  K +V + GV     +L+      ++    +  P ++K L 
Sbjct: 323 AAFTGTDSHSFEPS--KIDMKLLVGAAGVNTPNFVLLESTEGLAKKCRHLRFPVIVKHLS 380

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSW-NHGDQLLIEQYVDGIELTC-------GVMGDAS 186
           G +S+GI    +  ++    ++  ++    +  L+E+++ G E T         + G   
Sbjct: 381 GYASVGIHKDNRCDTLDELKVKVRAFLAEFNHALVEEFIRGREGTVLACADRGSLFGVKV 440

Query: 187 LDVTEIA-VPKSDFYSYELKYSSLNSTHVLPAKIP--LDIYKEVQRLAFLAHQ-AIGCRG 242
                   +   D ++Y  K  ++       + +P     Y ++   A  A +  +   G
Sbjct: 441 FKPLMFKFLQNDDDFAYFEKKWTMECNENAYSFLPHNDPAYPQIIDTARNAFRHIMNGVG 500

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGM 268
             R DF  DP    V++LEIN   GM
Sbjct: 501 YGRVDFRIDPK-GDVYFLEINPNCGM 525


>gi|254689155|ref|ZP_05152409.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella abortus
           bv. 6 str. 870]
 gi|260754654|ref|ZP_05867002.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella abortus
           bv. 6 str. 870]
 gi|260674762|gb|EEX61583.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella abortus
           bv. 6 str. 870]
          Length = 452

 Score =  106 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 88/221 (39%), Gaps = 20/221 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---- 109
            +H  +G   E+     ILE  +I +         +  DK+ +K+     G+PV P    
Sbjct: 77  AIHPGYGFLSENAKFAEILEAHDITFIGPTASHIRIMGDKIEAKRTAKRLGIPVVPGSDG 136

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
            +            I  P +IK   GG   G+ V +  + +P+ L     ++ +    D 
Sbjct: 137 GVTDEVEAARIAKEIGYPVIIKASAGGGGRGMKVARSAEELPIALATARSEAGAAFGDDA 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELK-YSSLNSTHVLPAKIPLDI 223
           + IE+Y++    +   VMGD + +   +            K +   NS    PA +  + 
Sbjct: 197 VYIEKYLEKPRHIEVQVMGDGAGNAVHLGERDCSLQRRHQKVWEEGNS----PA-LNAEA 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +++  +   A   +G RG    +FL+     + +++E+N 
Sbjct: 252 REKIGMICANACAELGYRGAGTIEFLY--EDGEFYFIEMNT 290


>gi|322382667|ref|ZP_08056531.1| D-alanine-D-alanine ligase-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
 gi|321153365|gb|EFX45788.1| D-alanine-D-alanine ligase-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
          Length = 125

 Score =  106 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 32/124 (25%), Positives = 59/124 (47%), Gaps = 5/124 (4%)

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
           +G +L  G +   SL      + + D    + +  S N+  ++PA +  +   ++Q  A 
Sbjct: 4   NGTDLIVGEVDQISLSHGIFRIHQED----QPEKGSENAVVLVPANLSAEKRIKIQETAK 59

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
             ++A+GC+G+SR D      + ++   E+N  PG T  S +P M A AG +   L+   
Sbjct: 60  AIYKALGCKGLSRVDMFLQK-NGRIILNEVNTLPGFTVYSRYPRMMAAAGMTLSGLIDHC 118

Query: 293 VEDA 296
           +  A
Sbjct: 119 ITLA 122


>gi|13509015|emb|CAC35258.1| D-alanin-D-alanin ligase [Campylobacter jejuni]
          Length = 160

 Score =  106 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 36/163 (22%), Positives = 77/163 (47%), Gaps = 7/163 (4%)

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSL 139
               + AS LS +K  +K    S GV      ++ R   +S+  +S P +IKP + GSS+
Sbjct: 1   IGPRLEASVLSFNKELTKLYAKSVGVKTLDYTML-RKNQNSKEKLSFPCIIKPARLGSSI 59

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDVTEIAVP-K 196
           GI ++K ++ +     +   +   + L++E++ + I+     G M +     + I  P K
Sbjct: 60  GISIVKDEKDLEYA--KDVGFEFDNDLVVEEFKNNIKEYNLAGCMINDEFVFSIIEEPKK 117

Query: 197 SDFYSYELKYSSLNST-HVLPAKIPLDIYKEVQRLAFLAHQAI 238
            +F  +E KY S +    ++ A +  ++ ++++      +  +
Sbjct: 118 KEFLDFEQKYLSFSGHNELIEADLSKELKEKLKDSFKKIYNPL 160


>gi|302878651|ref|YP_003847215.1| D-alanine--D-alanine ligase domain-containing protein [Gallionella
           capsiferriformans ES-2]
 gi|302581440|gb|ADL55451.1| D-alanine--D-alanine ligase domain protein [Gallionella
           capsiferriformans ES-2]
          Length = 331

 Score =  106 bits (266), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 55/284 (19%), Positives = 105/284 (36%), Gaps = 22/284 (7%)

Query: 26  LEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDG--LVQAILELLEIPYTHSG 83
           +   G +V   +    +    A    D+  ++  G    +   LV AI E   + +    
Sbjct: 50  INSLGLRVHTYNGPDDLAKNAALHSNDIVLSIYGGRASRNRMALVPAICETFGLRFIGPD 109

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNR-FTMDSQHLISPPYVIKPLKGGSSLGII 142
           +    ++ DK  +K++ S CG+      +V     +     +  P VIKPL  GSS+GI 
Sbjct: 110 VYGRIVAQDKEVTKRLASDCGIITPAWRIVRSVEDLRYISGLRLPVVIKPLMEGSSIGIA 169

Query: 143 ----VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM---GDASLDVTEIAVP 195
               V+     +PL      ++     +LIE++V G E+    +   G  S   +E+ + 
Sbjct: 170 QRNRVVDVADVLPLAKELLETF--NQPVLIEEFVAGREVAYSKIQHAGAESWAFSEVVIE 227

Query: 196 KSDFYSYELKYSSLNSTHVLPA------KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
            +D   Y   +       ++P        I  +++   +          G  G  R D  
Sbjct: 228 GND--DYFTNHLFDADEKLIPTVGRTIRNIDHELHANDRAAIDTFLTMFGAYGYCRVDGR 285

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
                    +LE+     + P   F       G+S+ E++  ++
Sbjct: 286 L--ADGNFHFLELTPDAWIAPRGQFARGFTEKGWSYAEVIAAVL 327


>gi|49475570|ref|YP_033611.1| acetyl-CoA carboxylase biotin carboxylase subunit [Bartonella
           henselae str. Houston-1]
 gi|49238377|emb|CAF27604.1| Biotin carboxylase [Bartonella henselae str. Houston-1]
          Length = 452

 Score =  106 bits (266), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 45/220 (20%), Positives = 92/220 (41%), Gaps = 18/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     +LE  +I +         +  DK+ +K+     G+PV P    
Sbjct: 77  AVHPGYGFLSENAKFADVLEAHKITFIGPTAAHIRIMGDKIEAKKTAKKLGIPVVPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
            I      +   H I  P +IK   GG   G+ V++ +Q   + L     ++++    D 
Sbjct: 137 AITEEAEALRIAHEIGYPVIIKASAGGGGRGMKVVRSEQEFAIALETTRSEAAAAFGDDA 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+Y++    +   V+GD + +   +        S + ++  +      PA +     
Sbjct: 197 VYIEKYLEKPRHIEIQVIGDGAGNAIHLGERD---CSLQRRHQKIWEEATSPA-LNEIER 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K++  +   A   +G RG    +FL+   + K +++E+N 
Sbjct: 253 KKIGDIVANACAQLGYRGAGTIEFLY--ENGKFYFIEMNT 290


>gi|322817889|gb|EFZ25470.1| hypothetical protein TCSYLVIO_8369 [Trypanosoma cruzi]
          Length = 789

 Score =  106 bits (266), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 51/266 (19%), Positives = 104/266 (39%), Gaps = 29/266 (10%)

Query: 27  EDAGFKVSQIDVDRS-----VGLVLAHLKPDLAFNVLHGNFGEDGLVQAI-----LELLE 76
           +   +  +++ + +S     V  ++     D+ FN+  G  G+D     +     LE   
Sbjct: 265 DKKRYTFTEVSLRKSESYLRVRELVTSNNFDVFFNLCDG--GKDEKRAGVEVVEALEEHN 322

Query: 77  IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL--ISPPYVIKPLK 134
             +T +   +   S  K+  K +V + GV     +L+      ++    +  P ++K L 
Sbjct: 323 AAFTGTDSHSFEPS--KIDMKLLVGAAGVNTPNFVLLESTEGLAKKCRHLRFPVIVKHLS 380

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSW-NHGDQLLIEQYVDGIELTC-------GVMGDAS 186
           G +S+GI    +  ++    ++  ++    +  L+E+++ G E T         + G   
Sbjct: 381 GYASVGIHKDNRCDTLDELKVKVRAFLAEFNHALVEEFIRGREGTVLACADRGSLFGVKV 440

Query: 187 LDVTEIA-VPKSDFYSYELKYSSLNSTHVLPAKIP--LDIYKEVQRLAFLAHQ-AIGCRG 242
                   +   D ++Y  K  ++       + +P     Y  +   A  A +  +   G
Sbjct: 441 FKPLMFKFLQNDDDFAYFEKKWTMECNESAYSFLPHNDPAYPHIIDTARNAFRHIMNGVG 500

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGM 268
             R DF  DP    V++LEIN   GM
Sbjct: 501 YGRVDFRIDPK-GDVYFLEINPNCGM 525


>gi|13509021|emb|CAC35261.1| D-alanin-D-alanin ligase [Campylobacter jejuni]
 gi|37783479|gb|AAP41867.1| D-alanin-D-alanin ligase [Campylobacter jejuni]
          Length = 160

 Score =  106 bits (266), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 35/163 (21%), Positives = 77/163 (47%), Gaps = 7/163 (4%)

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSL 139
               + AS LS +K  +K    S GV      ++ R   +S+  ++ P +IKP + GSS+
Sbjct: 1   IGPRLEASILSFNKELTKLYAKSVGVKTLDYTML-RKNQNSKEKLNFPCIIKPARLGSSI 59

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDVTEIAVP-K 196
           GI ++K ++ +     +   +   + L++E++ + I+     G M +     + I  P K
Sbjct: 60  GISIVKDEKDLEYA--KDVGFEFDNDLVVEEFKNNIKEYNLAGCMINDEFVFSIIEEPKK 117

Query: 197 SDFYSYELKYSSLNST-HVLPAKIPLDIYKEVQRLAFLAHQAI 238
            +F  +E KY S +    ++ A +  ++ ++++      +  +
Sbjct: 118 KEFLDFEQKYLSFSGHNELIEADLSEELKEKLEDSFKKIYNPL 160


>gi|37783477|gb|AAP41866.1| D-alanin-D-alanin ligase [Campylobacter jejuni]
          Length = 160

 Score =  106 bits (266), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 36/163 (22%), Positives = 78/163 (47%), Gaps = 7/163 (4%)

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSL 139
               + AS LS +K  +K    S GV      ++ R   +S+  +S P +IKP + GSS+
Sbjct: 1   IGPRLEASVLSFNKELTKLYAKSVGVKTLDYTIL-RKNQNSKEKLSFPCIIKPARLGSSI 59

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDVTEIAVP-K 196
           GI ++K ++ +     +   +   + L++E++ + I+     G M +     + I  P K
Sbjct: 60  GISIVKDEKDLEYA--KDVGFEFDNDLVVEEFKNNIKEYNLAGCMINDEFVFSIIEEPKK 117

Query: 197 SDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAI 238
            +F  +E KY S +  + ++ A +  ++ ++++      +  +
Sbjct: 118 KEFLDFEQKYLSFSGHNGLIEADLSEELKEKLKDSFKKIYNPL 160


>gi|302887094|ref|XP_003042436.1| hypothetical protein NECHADRAFT_86550 [Nectria haematococca mpVI
           77-13-4]
 gi|256723346|gb|EEU36723.1| hypothetical protein NECHADRAFT_86550 [Nectria haematococca mpVI
           77-13-4]
          Length = 359

 Score =  106 bits (265), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 64/325 (19%), Positives = 111/325 (34%), Gaps = 68/325 (20%)

Query: 21  ACASALEDAGFKVSQIDVDRSVGLVLA---HLKPDLAFNVLHGNFG--EDGLVQAILELL 75
               ALE  G +V      +++   +A   H   D+ FN   G+ G   +  V AILE  
Sbjct: 41  GITEALERLGHRVVHAPGLKALIKDIAANKHKNWDVVFNYSKGSHGTARESQVPAILEEY 100

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH-----LISPPYVI 130
           +IP+T S                      +   P ++V +F  D         +S P  +
Sbjct: 101 QIPFTFSD-------------------AEIRTSPYVVVPKFDDDPLDYSELKKLSYPLFV 141

Query: 131 KPLKGGSSLGIIVIKK---DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS- 186
           KP       GI    K    + +  ++ Q  S     ++LIE ++ G E T  + G    
Sbjct: 142 KPTSCPQCNGITCANKILKPKDLEHEVDQLRSQFKDQEILIENFLGGREFTLAIAGTGED 201

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK---------------IPLDIYKEVQRLA 231
             V  IA    + ++   K        +  A+               +   ++ E+  L+
Sbjct: 202 AHVVGIAELIWNPHTLRAKDMIPVDFSIALARMARSVSKGFSLEDVPLSDPLWDELADLS 261

Query: 232 FLAHQAIGCRGISRSDFLFD--PLSRKVFWLE-----------------INVQPGMTPV- 271
             A+ A+GCR   R D              +E                 ++   GM P  
Sbjct: 262 LKAYTALGCRDGGRVDIRLTSEEQGSAPCVIEVPSSCQAVSLLSTDAIQVDPIFGMRPDR 321

Query: 272 SIFPEMAAYAGYSFRELLLWMVEDA 296
           S +  +A   G  + E++   ++ A
Sbjct: 322 SRYAFIAKSNGVEYPEMIQDFLDIA 346


>gi|326435766|gb|EGD81336.1| hypothetical protein PTSG_11373 [Salpingoeca sp. ATCC 50818]
          Length = 975

 Score =  106 bits (265), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 52/314 (16%), Positives = 106/314 (33%), Gaps = 48/314 (15%)

Query: 20  KACASALEDA-GFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF---GE-DGLVQAILEL 74
                ALE+    ++S ++   S+        P   FN+    F    E +  + A++E+
Sbjct: 144 AGLKEALENIPDVRISYLNDHASLISTFQTRPPAFIFNLCDEGFMNVNETEPHLPALMEV 203

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVP------------VCPSILVNRFTMDSQH 122
             IP+T + +    +  DK   + +    GVP              P+   +     +  
Sbjct: 204 FNIPFTGTSVHGLTICRDKALVRTIAEQAGVPVPKEVVVPFAEGTPPT---DDQLSTAAA 260

Query: 123 LISPPYVIKPLKGGSSLGII---VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
            +  P ++KP     S GI    V    Q +   +  + +      +L++ ++ G E T 
Sbjct: 261 AVGYPCIVKPRSSDGSTGITQQCVAHDLQQLRGAIDAAMA-EIKQDMLVQTFLPGREFTV 319

Query: 180 GVMGD------ASLDVTEIAV-------PKSDFYSYELKYSSLNSTHV--LPAKIPLDIY 224
             +G+        L + EI         P+   +  +        T V      +   + 
Sbjct: 320 SCVGNPSTGDFEVLPLLEIDYSHLKGDGPRVQLFDGKRGLIDDYWTQVTHTHGHVDTAVL 379

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV---QPGMTPVSIFPEMAAYA 281
             +        + +  +   R DF  D     +  L++N      G      F      A
Sbjct: 380 AALHTWCSKLFEELQLKDYCRMDFRMDAH-GDMHLLDVNPNNWIGG-----KFRRSGELA 433

Query: 282 GYSFRELLLWMVED 295
           G ++ +LL  +++ 
Sbjct: 434 GMTWPQLLRRVIDT 447


>gi|239831783|ref|ZP_04680112.1| acetyl-CoA carboxylase, biotin carboxylase [Ochrobactrum
           intermedium LMG 3301]
 gi|239824050|gb|EEQ95618.1| acetyl-CoA carboxylase, biotin carboxylase [Ochrobactrum
           intermedium LMG 3301]
          Length = 459

 Score =  106 bits (265), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 88/220 (40%), Gaps = 18/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---- 109
            +H  +G   E+     ILE   I +         +  DK+ +K+     G+PV P    
Sbjct: 84  AIHPGYGFLSENAKFAEILEAHGITFIGPTASHIRIMGDKIEAKRTAKRLGIPVVPGSDG 143

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
            +  +         I  P +IK   GG   G+ V + ++ + + L     ++ +    D 
Sbjct: 144 GVTDDVEAARIAKEIGYPVIIKASAGGGGRGMKVARSEEDLSIALATARSEAGAAFGDDA 203

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+Y++    +   VMGD + +   +        S + ++  +      PA +  +  
Sbjct: 204 VYIEKYLEKPRHIEVQVMGDGAGNAIHLGERD---CSLQRRHQKVWEEANSPA-LNAEAR 259

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            ++  +   A   +G RG    +FL+     + +++E+N 
Sbjct: 260 DKIGMVCANACAELGYRGAGTIEFLY--EDGEFYFIEMNT 297


>gi|153009604|ref|YP_001370819.1| acetyl-CoA carboxylase biotin carboxylase subunit [Ochrobactrum
           anthropi ATCC 49188]
 gi|151561492|gb|ABS14990.1| acetyl-CoA carboxylase, biotin carboxylase [Ochrobactrum anthropi
           ATCC 49188]
          Length = 459

 Score =  105 bits (264), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 88/220 (40%), Gaps = 18/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---- 109
            +H  +G   E+     ILE   I +         +  DK+ +K+     G+PV P    
Sbjct: 84  AIHPGYGFLSENAKFAEILEAHGITFIGPTASHIRIMGDKIEAKRTAKRLGIPVVPGSDG 143

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
            +  +         I  P +IK   GG   G+ V + ++ + + L     ++ +    D 
Sbjct: 144 GVTDDVEAARIAKEIGYPVIIKASAGGGGRGMKVARTEEDLSVALATARTEAGAAFGDDA 203

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+Y++    +   VMGD + +   +        S + ++  +      PA +  +  
Sbjct: 204 VYIEKYLEKPRHIEVQVMGDGAGNAIHLGERD---CSLQRRHQKVWEEANSPA-LNAEAR 259

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            ++  +   A   +G RG    +FL+     + +++E+N 
Sbjct: 260 DKIGMVCANACAELGYRGAGTIEFLY--EDGEFYFIEMNT 297


>gi|49183264|ref|YP_026516.1| D-alanine--D-alanine ligase, C-terminus [Bacillus anthracis str.
           Sterne]
 gi|65317672|ref|ZP_00390631.1| COG1181: D-alanine-D-alanine ligase and related ATP-grasp enzymes
           [Bacillus anthracis str. A2012]
 gi|165871535|ref|ZP_02216181.1| D-alanine--D-alanine ligase (D-alanylalanine
           synthetase)(D-Ala-D-Ala ligase) [Bacillus anthracis str.
           A0488]
 gi|167634137|ref|ZP_02392459.1| D-alanine--D-alanine ligase (D-alanylalanine
           synthetase)(D-Ala-D-Ala ligase) [Bacillus anthracis str.
           A0442]
 gi|167640293|ref|ZP_02398558.1| D-alanine--D-alanine ligase (D-alanylalanine
           synthetase)(D-Ala-D-Ala ligase) [Bacillus anthracis str.
           A0193]
 gi|170687730|ref|ZP_02878945.1| D-alanine--D-alanine ligase (D-alanylalanine
           synthetase)(D-Ala-D-Ala ligase) [Bacillus anthracis str.
           A0465]
 gi|170707870|ref|ZP_02898320.1| D-alanine--D-alanine ligase (D-alanylalanine
           synthetase)(D-Ala-D-Ala ligase) [Bacillus anthracis str.
           A0389]
 gi|177653413|ref|ZP_02935623.1| D-alanine--D-alanine ligase (D-alanylalanine
           synthetase)(D-Ala-D-Ala ligase) [Bacillus anthracis str.
           A0174]
 gi|190567364|ref|ZP_03020278.1| D-alanine--D-alanine ligase (D-alanylalanine
           synthetase)(D-Ala-D-Ala ligase) [Bacillus anthracis
           Tsiankovskii-I]
 gi|227812913|ref|YP_002812922.1| D-alanine--D-alanine ligase [Bacillus anthracis str. CDC 684]
 gi|229604016|ref|YP_002864872.1| D-alanine--D-alanine ligase [Bacillus anthracis str. A0248]
 gi|254686587|ref|ZP_05150446.1| D-alanyl-alanine synthetase A [Bacillus anthracis str. CNEVA-9066]
 gi|254734935|ref|ZP_05192647.1| D-alanyl-alanine synthetase A [Bacillus anthracis str. Western
           North America USA6153]
 gi|254739720|ref|ZP_05197413.1| D-alanyl-alanine synthetase A [Bacillus anthracis str. Kruger B]
 gi|254754909|ref|ZP_05206944.1| D-alanyl-alanine synthetase A [Bacillus anthracis str. Vollum]
 gi|254756952|ref|ZP_05208980.1| D-alanyl-alanine synthetase A [Bacillus anthracis str. Australia
           94]
 gi|49177191|gb|AAT52567.1| D-alanine--D-alanine ligase, C-terminus [Bacillus anthracis str.
           Sterne]
 gi|164712639|gb|EDR18170.1| D-alanine--D-alanine ligase (D-alanylalanine
           synthetase)(D-Ala-D-Ala ligase) [Bacillus anthracis str.
           A0488]
 gi|167511695|gb|EDR87076.1| D-alanine--D-alanine ligase (D-alanylalanine
           synthetase)(D-Ala-D-Ala ligase) [Bacillus anthracis str.
           A0193]
 gi|167530451|gb|EDR93166.1| D-alanine--D-alanine ligase (D-alanylalanine
           synthetase)(D-Ala-D-Ala ligase) [Bacillus anthracis str.
           A0442]
 gi|170127228|gb|EDS96105.1| D-alanine--D-alanine ligase (D-alanylalanine
           synthetase)(D-Ala-D-Ala ligase) [Bacillus anthracis str.
           A0389]
 gi|170668257|gb|EDT19005.1| D-alanine--D-alanine ligase (D-alanylalanine
           synthetase)(D-Ala-D-Ala ligase) [Bacillus anthracis str.
           A0465]
 gi|172081453|gb|EDT66526.1| D-alanine--D-alanine ligase (D-alanylalanine
           synthetase)(D-Ala-D-Ala ligase) [Bacillus anthracis str.
           A0174]
 gi|190561491|gb|EDV15462.1| D-alanine--D-alanine ligase (D-alanylalanine
           synthetase)(D-Ala-D-Ala ligase) [Bacillus anthracis
           Tsiankovskii-I]
 gi|227007521|gb|ACP17264.1| D-alanine--D-alanine ligase [Bacillus anthracis str. CDC 684]
 gi|229268424|gb|ACQ50061.1| D-alanine--D-alanine ligase [Bacillus anthracis str. A0248]
          Length = 91

 Score =  105 bits (264), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 22/78 (28%), Positives = 42/78 (53%), Gaps = 1/78 (1%)

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278
           +  +    ++R A +A Q++   G++R+DF       +V+  E+N  PG TP S+FP + 
Sbjct: 1   MTEEESNVIKRDAIVAFQSLDGAGLTRADFFLTK-DGEVYINEVNTMPGFTPFSMFPLLW 59

Query: 279 AYAGYSFRELLLWMVEDA 296
            + G  + EL+  ++  A
Sbjct: 60  QHTGLPYPELIEELIRLA 77


>gi|240850674|ref|YP_002972074.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Bartonella
           grahamii as4aup]
 gi|240267797|gb|ACS51385.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Bartonella
           grahamii as4aup]
          Length = 452

 Score =  105 bits (264), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 90/220 (40%), Gaps = 18/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     +LE  +I +         +  DK+ +K+     G+PV P    
Sbjct: 77  AVHPGYGFLSENAKFADVLEAHDITFIGPTATHIRIMGDKIEAKKTAKKLGIPVVPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
            +      + +   I  P +IK   GG   G+ V+  +Q   + L     ++ +    D 
Sbjct: 137 AVTEESDALRTAREIGYPVIIKASAGGGGRGMKVVHSEQEFSIALKTTRSEAKAAFGDDA 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+Y++    +   V+GD + +   +        S + ++  +      PA +     
Sbjct: 197 VYIEKYLEKPRHIEIQVIGDGAGNAIHLGERD---CSLQRRHQKVWEEATSPA-LNETER 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K++  +   A   +G RG    +FL+   + + +++E+N 
Sbjct: 253 KKIGSIVANACAQLGYRGAGTIEFLY--ENGEFYFIEMNT 290


>gi|319404296|emb|CBI77889.1| Biotin carboxylase [Bartonella rochalimae ATCC BAA-1498]
          Length = 452

 Score =  105 bits (264), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 91/220 (41%), Gaps = 18/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     +LE   I +         +  DK+ +K+   S G+PV P    
Sbjct: 77  AVHPGYGFLSENAKFADVLEAHNITFIGPTAAHIRIMGDKIEAKKTAKSLGIPVVPGSDN 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
            I+  +  +   + I  P +IK   GG   G+ V   +Q +         ++S+  + D 
Sbjct: 137 AIVEEKEALRIANEIGYPVIIKASAGGGGRGMKVAHSEQKLLAAFKTARSEASAAFNDDS 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+Y++    +   ++GD + +   +        S + ++  +      P  +     
Sbjct: 197 VYIEKYLEKPRHIEIQIIGDGAGNAIHLGERD---CSLQRRHQKVWEEAHSPV-LNEAER 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K++  +   A   +G RG    +FL+   + + +++E+N 
Sbjct: 253 KKIGNIVANACAKLGYRGAGTIEFLY--ENGEFYFIEMNT 290


>gi|71416962|ref|XP_810430.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70874959|gb|EAN88579.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 789

 Score =  105 bits (264), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 51/266 (19%), Positives = 104/266 (39%), Gaps = 29/266 (10%)

Query: 27  EDAGFKVSQIDVDRS-----VGLVLAHLKPDLAFNVLHGNFGEDGLVQAI-----LELLE 76
           +   +  +++ + +S     V  ++     D+ FN+  G  G+D     +     LE   
Sbjct: 265 DKKRYTFTEVSLRKSESYLRVRELVTSNNFDVFFNLCDG--GKDEKRAGVEVVEALEEHN 322

Query: 77  IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL--ISPPYVIKPLK 134
             +T +   +   S  K+  K +V + GV     +L+      ++    +  P ++K L 
Sbjct: 323 AAFTGTDSHSFEPS--KIDMKLLVGAAGVNTPNFVLLESTEGLAKKCRHLRFPVIVKHLS 380

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSW-NHGDQLLIEQYVDGIELTC-------GVMGDAS 186
           G +S+GI    +  ++    ++  ++    +  L+E+++ G E T         + G   
Sbjct: 381 GYASVGIHKDNRCDTLDELKVKVRAFLAEFNHALVEEFIRGREGTVLACADRGSLFGVKV 440

Query: 187 LDVTEIA-VPKSDFYSYELKYSSLNSTHVLPAKIP--LDIYKEVQRLAFLAHQ-AIGCRG 242
                   +   D ++Y  K  ++       + +P     Y  +   A  A +  +   G
Sbjct: 441 FKPLMFKFLQNDDDFAYFEKKWTMECNENAYSFLPHNDPAYPHIIDTARNAFRHIMNGVG 500

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGM 268
             R DF  DP    V++LEIN   GM
Sbjct: 501 YGRVDFRIDPK-GDVYFLEINPNCGM 525


>gi|13509017|emb|CAC35259.1| D-alanin-D-alanin ligase [Campylobacter jejuni]
          Length = 160

 Score =  105 bits (263), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 35/163 (21%), Positives = 76/163 (46%), Gaps = 7/163 (4%)

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSL 139
               + AS LS +K  +K    S GV      ++ R   +S+  ++ P +IKP + GSS+
Sbjct: 1   IGPRLEASVLSFNKELTKLYAKSVGVKTLDYTML-RKNQNSKEKLNFPCIIKPARLGSSI 59

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDVTEIAVP-K 196
           GI ++K ++ +     +   +   + L++E + + I+     G M +     + I  P K
Sbjct: 60  GISIVKDEKDLEYA--KDVGFEFDNDLVVEDFKNNIKEYNLAGCMINDEFVFSIIEEPKK 117

Query: 197 SDFYSYELKYSSLNST-HVLPAKIPLDIYKEVQRLAFLAHQAI 238
            +F  +E KY S +    ++ A +  ++ ++++      +  +
Sbjct: 118 KEFLDFEQKYLSFSGHNELIEADLSEELKEKLKDSFKKIYNPL 160


>gi|327334539|gb|EGE76250.1| D-alanine--D-alanine ligase B [Propionibacterium acnes HL097PA1]
          Length = 139

 Score =  105 bits (263), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 39/134 (29%), Positives = 59/134 (44%), Gaps = 6/134 (4%)

Query: 166 LLIEQYVDGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL 221
           +++E+++ G EL  G++    G   L   EI  P    Y Y   Y+   +    PA I  
Sbjct: 2   VVVEEFIVGTELAIGMITTSEGTRVLPAVEIR-PVGGVYDYSAMYTGGETRLTAPADISD 60

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYA 281
              +    +A +  + +   GISR D + D   R VF LE    PGMT  S+ P     A
Sbjct: 61  TAAQTATAMARVVQKELDFSGISRVDAIVDESGRPVF-LEAGAAPGMTATSLVPVAMKAA 119

Query: 282 GYSFRELLLWMVED 295
           G    E+   +V+D
Sbjct: 120 GLDLGEVCSRLVDD 133


>gi|312132199|ref|YP_003999539.1| d-alanine--d-alanine ligase [Leadbetterella byssophila DSM 17132]
 gi|311908745|gb|ADQ19186.1| D-alanine--D-alanine ligase [Leadbetterella byssophila DSM 17132]
          Length = 585

 Score =  105 bits (263), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 77/224 (34%), Gaps = 64/224 (28%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDA------------------------------- 29
           + +  GG S ERE+S   G+     L+                                 
Sbjct: 7   VGIFFGGQSREREISFLGGRTAYEHLDKRFFEPVLIFVDSLGNFIHVEPSILNEADIRSF 66

Query: 30  --------GFKVSQ---------------IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDG 66
                   G+KV                   +   V +       D AF V+HG   EDG
Sbjct: 67  YPSKNQNNGYKVYIESLGPLKVSQLYKLIYKIGSQVKIEELKSYMDFAFVVMHGPSAEDG 126

Query: 67  LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH---- 122
            +Q +LE L IPY   GIL SA+ ++K    ++++         + +++   ++      
Sbjct: 127 SIQGLLEWLNIPYLGPGILGSAVGINKPFQNKLMAYATGQEKKYLTISKREWNTSDRSKL 186

Query: 123 ------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160
                  +  P+V+K    GSS+G+ +++K          S  +
Sbjct: 187 FSSVIAKLGFPFVVKAPHQGSSIGVAIVRKRSLEEFSKAMSQCF 230



 Score = 94.0 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 44/196 (22%), Positives = 77/196 (39%), Gaps = 13/196 (6%)

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLG--IIVIKKDQSI--PLDLLQSSSWNHGDQLLI 168
           V     +    I  P V+     G  +     ++KK        ++ Q +S N  D +LI
Sbjct: 251 VMEKMSNLDEGIGFPVVL----DGEQIYHPATLLKKLDEYLTQHEVAQLNSVNGEDYVLI 306

Query: 169 EQYVDGIELTCGVMGDASLDVTEIAVPK----SDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           E+++ G E +CGV+ D    V  +   +    +  + ++ KY S  S   +P K      
Sbjct: 307 EEFISGQEFSCGVIQDDEGRVLPLPPAEVYGETATFDFKAKYKSTVSKKRIPVKTSDANL 366

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
           +++      A +A G   I R D         V   + N  PGM+P S   +  A  G++
Sbjct: 367 EKIHEDVLKAFEATGMSVICRIDGFITE-DDVVVLHDPNTLPGMSPSSFIFKQMAEVGFN 425

Query: 285 FRELLLWMVEDASCLR 300
               L + +  +   R
Sbjct: 426 ITNSLTYFIRQSLIER 441


>gi|319407302|emb|CBI80943.1| Biotin carboxylase [Bartonella sp. 1-1C]
          Length = 452

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 91/220 (41%), Gaps = 18/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     +LE   I +         +  DK+ +K+   S G+PV P    
Sbjct: 77  AVHPGYGFLSENAKFADVLEAHNITFIGPTAAHIRIMGDKIEAKKTAKSLGIPVVPGSDN 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
            I+  +  +   + I  P +IK   GG   G+ V   +Q +         ++S+  + D 
Sbjct: 137 AIVEEKEALRIANEIGYPVIIKASAGGGGRGMKVAHSEQKLLAAFKTARSEASAAFNDDS 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+Y++    +   ++GD + +   +        S + ++  +      P  +     
Sbjct: 197 VYIEKYLEKPRHIEIQIIGDGAGNAIHLGERD---CSLQRRHQKVWEEAYSPI-LNEAER 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K++  +   A   +G RG    +FL+   + + +++E+N 
Sbjct: 253 KKIGNIVANACAKLGYRGAGTVEFLY--ENGEFYFIEMNT 290


>gi|163868281|ref|YP_001609490.1| acetyl-CoA carboxylase biotin carboxylase subunit [Bartonella
           tribocorum CIP 105476]
 gi|161017937|emb|CAK01495.1| Biotin carboxylase [Bartonella tribocorum CIP 105476]
          Length = 452

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 90/220 (40%), Gaps = 18/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     +LE  +I +         +  DK+ +K+     G+PV P    
Sbjct: 77  AVHPGYGFLSENAKFADVLEAHDITFIGPTAAHIRIMGDKIEAKKTAQKLGIPVVPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
            +      + +   I  P +IK   GG   G+ V+  +Q   + L     ++ +    D 
Sbjct: 137 AVSEESDALRTAREIGYPVIIKASAGGGGRGMKVVHSEQEFSIALKTTRSEAKAAFGDDA 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+Y++    +   V+GD + +   +        S + ++  +      PA +     
Sbjct: 197 VYIEKYLEKPRHIEIQVIGDGAGNAIHLGERD---CSIQRRHQKVWEEATSPA-LNETER 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K++  +   A   +G RG    +FL+   + + +++E+N 
Sbjct: 253 KKIGSIVANACAELGYRGAGTVEFLY--ENGEFYFIEMNT 290


>gi|313619829|gb|EFR91419.1| D-alanine--D-alanine ligase [Listeria innocua FSL S4-378]
          Length = 92

 Score =  104 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 1/77 (1%)

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279
             +I ++++  A  A   +   G+ R+DF       ++F  E+N  PG TP S++P +  
Sbjct: 1   EPEILEQMKEYAVQAFLGLDASGLVRADFFLTE-DNQLFLNEVNTMPGFTPYSMYPLLWQ 59

Query: 280 YAGYSFRELLLWMVEDA 296
             G  +  L+  +V+ A
Sbjct: 60  ETGLPYGALIERLVDLA 76


>gi|13509025|emb|CAC35263.1| D-alanin-D-alanin ligase [Campylobacter jejuni]
          Length = 160

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 35/163 (21%), Positives = 77/163 (47%), Gaps = 7/163 (4%)

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSL 139
               + AS LS +K  +K    S GV      ++ R   +S+  ++ P +IKP + GSS+
Sbjct: 1   IGPRLEASVLSFNKELTKLYAKSVGVKTLDCTML-RKNQNSKEKLNFPCIIKPARLGSSI 59

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDVTEIAVP-K 196
           GI ++K ++ +     +   +   + L++E++ + I+     G M +     + I  P K
Sbjct: 60  GISIVKDEKDLEYA--KDVGFEFDNDLVVEEFKNNIKEYNLAGCMINDEFVFSIIEEPKK 117

Query: 197 SDFYSYELKYSSLNST-HVLPAKIPLDIYKEVQRLAFLAHQAI 238
            +F  +E KY S +    ++ A +  ++ ++++      +  +
Sbjct: 118 KEFLDFEQKYLSFSGHNELIEADLSEELKEKLKDSFKKIYNPL 160


>gi|21307673|gb|AAL07283.1| ligase VanB2 [Streptococcus lutetiensis]
 gi|21307675|gb|AAL07284.1| ligase VanB2 [Streptococcus gallolyticus]
 gi|21307677|gb|AAL07285.1| ligase VanB2 [Streptococcus gallolyticus]
          Length = 145

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 34/147 (23%), Positives = 68/147 (46%), Gaps = 9/147 (6%)

Query: 92  DKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
           DK  +  +  + G+ V    ++++        ++ P  +KP + GSS G+  +   + + 
Sbjct: 1   DKSLAYILTKNAGIAVPEFQMIDKGDKPEAGALTYPVFVKPARSGSSFGVTKVNGTEELN 60

Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSY---EL 204
             +   ++  +  ++LIEQ + G E+ C VMG+       +V +I +    F  +   E 
Sbjct: 61  AAI--EAAGQYDGKILIEQAISGCEVGCAVMGNEDDLIVGEVDQIRLSHGIFRIHQENEP 118

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           +  S N+   +PA IP++    VQ  A
Sbjct: 119 EKGSENAMITVPADIPVEERNRVQETA 145


>gi|159491460|ref|XP_001703683.1| predicted protein [Chlamydomonas reinhardtii]
 gi|158270532|gb|EDO96374.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 570

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 52/258 (20%), Positives = 91/258 (35%), Gaps = 47/258 (18%)

Query: 51  PDLAFNVLHGNFGEDGL---VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV 107
           PD+  N+  G + ED     V   LE L +PYT +          K+  K      GV V
Sbjct: 95  PDVFLNLCDGGWDEDRAGKEVVEALERLNLPYTGANAAF--YEPSKIEMKMAAHYYGVKV 152

Query: 108 CPSILVNRF--------------TMDSQHLISPPYVIKPLKGGSSLGI---IVIKKDQSI 150
              + +                    S+  +  P ++K   G  S+G+     +  ++ +
Sbjct: 153 PAWVHIQCGVGRRGVEAGLEAVLAPPSRGGLRFPLIVKHPSGYGSVGMTKDSKVHNEEQL 212

Query: 151 PLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM----------GDASLDVTEIAV------ 194
              + +          L+E+++ G E T  V+          GD   D+T          
Sbjct: 213 RAQVARFV--GSFGGALVEEFIQGREFTVLVVEEPGAAADVGGDTDPDLTSFRPVAYTPV 270

Query: 195 -----PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
                P  DF  ++LK++   S    P     ++ + ++  A    +A       R DF 
Sbjct: 271 ECAFGPGEDFKHFDLKWTDYESLSWRPC-ADQELSERLKVAACDTFRATRGVSYGRCDFR 329

Query: 250 FDPLSRKVFWLEINVQPG 267
            D    +++ LEIN   G
Sbjct: 330 VDGA-GEIYLLEINPNCG 346


>gi|313192179|emb|CBX19949.1| D alanine-D alanine ligase [Clostridium perfringens]
          Length = 124

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 32/130 (24%), Positives = 67/130 (51%), Gaps = 6/130 (4%)

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
            GGSS+   +++  +++   +L++    +  +++IE+Y+ G E+TC ++    L V  I 
Sbjct: 1   NGGSSVATTLVESKEAVKDAVLEAL--KYDTEVMIEEYIKGDEITCPIIDGKMLPVLAIK 58

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
            PK  F+    KY    +   +  K+  +++KEV+++A   ++ + C   +R D L    
Sbjct: 59  -PKGKFFDIASKYEDGGADEFI-VKLNENLHKEVEKMALETYKLLKCDVYARVDMLV--K 114

Query: 254 SRKVFWLEIN 263
               + LE+N
Sbjct: 115 DNIPYVLEVN 124


>gi|57790302|gb|AAW56078.1| vancomycin resistance protein C2 [Enterococcus casseliflavus]
          Length = 126

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 33/123 (26%), Positives = 66/123 (53%), Gaps = 4/123 (3%)

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
             P   KP + GSS GI  +   + I   L ++ +  +   +L+++ + G+E+ CG++G+
Sbjct: 6   GFPVFFKPNEAGSSKGITKVTCVEEIAPALKEAFA--YCSAVLLQKNIAGVEIGCGILGN 63

Query: 185 ASLDVTEIAVPK--SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            SL V           F+ +E KY  +++   +PA +P  I  +V+  A L ++++G +G
Sbjct: 64  DSLTVGACDAISLVDGFFDFEEKYQLISAKITVPAPLPETIETKVKEQAQLLYRSLGLKG 123

Query: 243 ISR 245
           ++R
Sbjct: 124 LAR 126


>gi|192360281|ref|YP_001983182.1| urea amidolyase-like protein [Cellvibrio japonicus Ueda107]
 gi|190686446|gb|ACE84124.1| urea amidolyase homolog [Cellvibrio japonicus Ueda107]
          Length = 1205

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 51/296 (17%), Positives = 104/296 (35%), Gaps = 41/296 (13%)

Query: 15  SLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILEL 74
           SL  G A  + L+        I + R  G    H          +G   E+    A  E 
Sbjct: 50  SLGEGAAAHTYLDRQKI----IAIARQTGAQAIHPG--------YGFLSENASFVAECEA 97

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---QHLISPPYVIK 131
            +I +             K +++++  + GVP+CP   +     D+    + I  P ++K
Sbjct: 98  ADIVFIGPTAEQMITFGLKHKARELAQAAGVPLCPGTDLLPSLEDATQAANCIGYPVMLK 157

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQLLIEQYVDG-IELTCGVMGDAS 186
              GG  +G+ +   D  +                 D + +E+++     +   V GD  
Sbjct: 158 STAGGGGIGMQLCHSDSELIAAFDSVKRLGKNNFADDGVFLEKFIAAARHIEVQVFGDGQ 217

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISR 245
                I            +  +       PA  +P    + +Q++A     ++  R    
Sbjct: 218 GTAVAIGE-----RDCSSQRRNQKVVEECPAPNLPEAQRQAMQQVAEQLLASVCYRNAGT 272

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS---FR-ELLLWMVEDAS 297
            +F++D L  + ++LE+N             +    G +   +  +L+ WM++ A+
Sbjct: 273 VEFIYDSLDNRFYFLEVNT-----------RLQVEHGVTEEVYSVDLVEWMLKQAA 317


>gi|50294352|ref|XP_449587.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49528901|emb|CAG62563.1| unnamed protein product [Candida glabrata]
          Length = 1834

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 42/252 (16%), Positives = 87/252 (34%), Gaps = 16/252 (6%)

Query: 22  CASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYT 80
            A AL+  G  V +  +    +  +      D      +G   E+       E   I + 
Sbjct: 675 MAQALD--GHTVEETYLHVEKIISIAKKYDVDAIIPG-YGFLSENASFADRCEQEGIQFI 731

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---QHLISPPYVIKPLKGGS 137
                       K  +++V  S GVP+ P   + +   ++      I  P ++K   GG 
Sbjct: 732 GPRGETIRKLGLKHSAREVAKSAGVPLVPGSPLVKNADEAFTIAKNIGYPVMVKSTAGGG 791

Query: 138 SLGIIVIKKDQSIPLDLL----QSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEI 192
            +G+  +  +Q +         Q SS+     + +E+++D    +   +MGD       +
Sbjct: 792 GIGLQKVDNEQDMRKAFETVKHQGSSYFGDSGVFMEKFIDNARHVEVQIMGDGKGKTLAL 851

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
                       K             +P +  +++   A      +  RG    +F++D 
Sbjct: 852 GERDCSLQRRNQK----VIEETPAPNLPRETRQKMLTAAERLGAYLNYRGAGTVEFIYDE 907

Query: 253 LSRKVFWLEINV 264
              + ++LE+N 
Sbjct: 908 QRDQFYFLEVNT 919


>gi|121602177|ref|YP_989057.1| acetyl-CoA carboxylase biotin carboxylase subunit [Bartonella
           bacilliformis KC583]
 gi|120614354|gb|ABM44955.1| acetyl-CoA carboxylase, biotin carboxylase [Bartonella
           bacilliformis KC583]
          Length = 446

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 43/220 (19%), Positives = 91/220 (41%), Gaps = 18/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     ILE   I +            DK+ +K+     G+P+ P    
Sbjct: 77  AVHPGYGFLSENAKFADILEAHNITFIGPTAAHIRTMGDKIEAKKTAKQLGIPIVPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGDQ 165
            +  +       H I  P +IK   GG   G+ V++ ++ + + L     ++ +  + D 
Sbjct: 137 AVTEDADAFRIAHEIGYPVIIKASAGGGGRGMKVVRSEKELSVALHTARSEAGAAFNDDS 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+Y++    +   VMGD + +   +        S + ++  +      PA +     
Sbjct: 197 VYIEKYLEKPRHIEIQVMGDGAGNAIHLGERD---CSLQRRHQKVWEEANSPA-LDESKR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K++  +   A   +G RG    +FL+   + + +++E+N 
Sbjct: 253 KKIGDIVANACAKLGYRGAGTIEFLY--ENSEFYFIEMNT 290


>gi|163759364|ref|ZP_02166450.1| acetyl-CoA carboxylase, biotin carboxylase protein [Hoeflea
           phototrophica DFL-43]
 gi|162283768|gb|EDQ34053.1| acetyl-CoA carboxylase, biotin carboxylase protein [Hoeflea
           phototrophica DFL-43]
          Length = 382

 Score =  102 bits (256), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 41/220 (18%), Positives = 78/220 (35%), Gaps = 18/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     IL+   I +         +  DK+ +K+     G+PV P    
Sbjct: 77  AVHPGYGFLSENAKFADILDAHGITFIGPTADHIRIMGDKITAKKTAEELGIPVVPGSEG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGDQ 165
            I  +         I  P +IK   GG   G+ V   ++ + L L     ++ +      
Sbjct: 137 EITTDEEAARVAKDIGFPVIIKATAGGGGRGMKVANNEEELSLALSTARSEAGAAFGNAA 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+Y+     +   V+GD   +   +            K             +  D  
Sbjct: 197 VYIEKYLGRPRHIEIQVLGDGEGNAVHLGERDCSLQRRHQK----VWEEANSPSLNEDQR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            E+  +   A + +  RG    +FL+     K +++E+N 
Sbjct: 253 MEIGEICASAMRKLRYRGAGTVEFLY--EDGKFYFIEMNT 290


>gi|39934462|ref|NP_946738.1| hypothetical protein RPA1388 [Rhodopseudomonas palustris CGA009]
 gi|39648311|emb|CAE26831.1| hypothetical protein RPA1388 [Rhodopseudomonas palustris CGA009]
          Length = 336

 Score =  102 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 50/238 (21%), Positives = 95/238 (39%), Gaps = 8/238 (3%)

Query: 68  VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-ILVNRFTMDSQHLISP 126
           V ++ E L + +  +     AL+ DK  SK    + G+PV    I  +   ++     + 
Sbjct: 89  VASVCEFLGLSHVGAPPNTRALAEDKWLSKLTARAIGLPVADGAIYASLADLEKPPHFAG 148

Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW-NHGDQLLIEQYVDGIELTCGVMGDA 185
           PY +K   G +S G+               +++    G  +L+E Y  GI++T  V+G  
Sbjct: 149 PYFVKNRFGAASEGVSEKSVQDDWDGAAKVAAALIGRGMSVLVEAYAPGIDITVPVLGGE 208

Query: 186 SLDVTEIAVPKSD----FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241
           +  +  +  P+SD      + +LK        +  A+    +  ++         A G  
Sbjct: 209 TPMMLGVVRPRSDRIGGIITEDLKRDDPLGYEM--AESDPILTDQLAVDVTALWAAAGPM 266

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
              R D+  DP + +  +LE N+   +         AA  G+S  ++L  +VE +   
Sbjct: 267 DYLRLDYRLDPATGQRTFLEFNICCHIGRSGAICLAAAQWGWSQADILGHVVEYSLTR 324


>gi|319405739|emb|CBI79362.1| Biotin carboxylase [Bartonella sp. AR 15-3]
          Length = 452

 Score =  102 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 41/220 (18%), Positives = 91/220 (41%), Gaps = 18/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     +LE   I +         +  DK+ +K+     G+PV P    
Sbjct: 77  AVHPGYGFLSENAKFADVLEAHNITFIGPTAAHIRIMGDKIEAKKTAKDLGIPVVPGSNE 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
            I+  +  +   + I  P +IK   GG   G+ V+  +Q +   L     ++++  + D 
Sbjct: 137 AIVEEKEALRIANEIGYPVIIKASAGGGGRGMKVVHSEQKLLTALKTARSEANAAFNDDS 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+Y++    +   V+GD + +   +        S + ++  +      P  +     
Sbjct: 197 VYIEKYLEKPRHIEIQVIGDGAGNAIHLGERD---CSLQRRHQKVWEEATSPV-LNETER 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K++  +   A   +  RG    +FL+   + + +++E+N 
Sbjct: 253 KKIGNIVANACAKLRYRGAGTIEFLY--ENGEFYFIEMNT 290


>gi|118474608|ref|YP_892697.1| biotin carboxylase [Campylobacter fetus subsp. fetus 82-40]
 gi|118413834|gb|ABK82254.1| acetyl-CoA carboxylase, biotin carboxylase [Campylobacter fetus
           subsp. fetus 82-40]
          Length = 445

 Score =  102 bits (255), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 87/224 (38%), Gaps = 14/224 (6%)

Query: 50  KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109
           + D  F   +G   E+     I     I +    + A AL  DK ++KQV+   G+PV P
Sbjct: 76  EADAIFPG-YGFLSENQNFVEICSKHNIKFIGPSVAAMALMSDKSKAKQVMMRAGIPVVP 134

Query: 110 SILVNRFTMDSQHLI----SPPYVIKPLKGGSSLGIIVIKKDQSIPL----DLLQSSSWN 161
               +   +D+   +      P ++K   GG   G+ V+++++ +         ++ S  
Sbjct: 135 GSDGSIQDIDAAKKLAREIGYPIIVKAAAGGGGRGMRVVEREEDLEKSFWSAESEAMSAF 194

Query: 162 HGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
               + +E+Y+ +   +   V+GD   +V  I            K             + 
Sbjct: 195 GDGTMYMEKYISNPRHIEVQVLGDEHGNVVHIGERDCSMQRRHQK----LIEESPAVILD 250

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
                 +   A  A +AIG  G    +FL+D    K +++E+N 
Sbjct: 251 DKTRANLHETAVKATKAIGYAGAGTFEFLYDQKDNKFYFIEMNT 294


>gi|258510765|ref|YP_003184199.1| urea carboxylase [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
 gi|257477491|gb|ACV57810.1| urea carboxylase [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 1201

 Score =  102 bits (254), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 43/257 (16%), Positives = 93/257 (36%), Gaps = 32/257 (12%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+           + +             K  ++ V    GVP+ P   +
Sbjct: 77  AIHPGYGFLSENATFARQCAERGLVFIGPDPEQIEKFGYKHVARDVARRAGVPLLPGTDL 136

Query: 114 NRFTMDSQHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQL 166
            R   + + +   I  P ++K   GG  +G+ V++++ ++          +      D +
Sbjct: 137 VRDLEELRCVCADIGYPVILKSTAGGGGIGMRVVEREDALADAFESVRRLAGQHFRDDGV 196

Query: 167 LIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIY 224
            +E+YV     +   + G+   ++  I            K          PA  +  +  
Sbjct: 197 FVEKYVPRARHIEVQIFGNRQGELVAIGERDCTLQRRNQK-----VVEECPAHVLSDETR 251

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
           + +   A    +A+G R     +FL+DP S   ++LE+N             +    G +
Sbjct: 252 RRLHEAALSVARAVGYRSAGTVEFLYDPSSASFYFLEVNT-----------RLQVEHGVT 300

Query: 285 ---FR-ELLLWMVEDAS 297
              +  +L+ WM+ +A+
Sbjct: 301 EEVYGIDLVEWMIREAA 317


>gi|319408519|emb|CBI82172.1| Biotin carboxylase [Bartonella schoenbuchensis R1]
          Length = 448

 Score =  101 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 41/220 (18%), Positives = 92/220 (41%), Gaps = 18/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     ILE  EI +         +  DK+ +K+   + G+P+ P    
Sbjct: 77  AIHPGYGFLSENAKFADILEAHEITFIGPTSAHIRIMGDKIEAKKTAKNLGIPIVPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGDQ 165
            +   +  +     I  P +IK   GG   G+ V++ ++ +         ++ +  + D 
Sbjct: 137 AVTDEKEALRIIDEIGYPVIIKASAGGGGRGMKVVRSEKELSTAFNTARSEARAAFNDDA 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+Y++    +   V+GD + +   +        S + ++  +      PA +     
Sbjct: 197 VYIEKYLEKPRHIEIQVIGDGAGNAIHLGERD---CSLQRRHQKVWEEAYSPA-LNELER 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K++  +   A   +G RG    +FL+   + + +++E+N 
Sbjct: 253 KKIGSIVANACAKLGYRGAGTIEFLY--ENGEFYFIEMNT 290


>gi|90417712|ref|ZP_01225624.1| acetyl-CoA carboxylase, biotin carboxylase [Aurantimonas
           manganoxydans SI85-9A1]
 gi|90337384|gb|EAS51035.1| acetyl-CoA carboxylase, biotin carboxylase [Aurantimonas
           manganoxydans SI85-9A1]
          Length = 449

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 87/220 (39%), Gaps = 18/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     IL+  +I +         +  DK+ +K+     G+PV P    
Sbjct: 77  AVHPGYGFLSENARFADILDAHKITFIGPTAEHIRIMGDKIEAKRTAKRLGIPVVPGSAG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGDQ 165
            +  +         I  P ++K   GG   G+ V K  Q + + L     ++ +    D 
Sbjct: 137 AVTDDGEAARIAEEIGYPVIVKASAGGGGRGMKVAKTAQDLSMALSTARSEAGAAFGDDA 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+Y++    +   V GD + +   +        S + ++  +      PA +  +  
Sbjct: 197 VYLEKYLEKPRHIEVQVFGDGAGNAIHLGERD---CSLQRRHQKVWEEASSPA-LDQEQR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +  +   A   +G RG    +FL+   + + +++E+N 
Sbjct: 253 DRIGMICANAIAKLGYRGAGTIEFLY--ENGEFYFIEMNT 290


>gi|332664347|ref|YP_004447135.1| D-alanine--D-alanine ligase domain-containing protein
           [Haliscomenobacter hydrossis DSM 1100]
 gi|332333161|gb|AEE50262.1| D-alanine--D-alanine ligase domain protein [Haliscomenobacter
           hydrossis DSM 1100]
          Length = 1212

 Score =  100 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 55/300 (18%), Positives = 108/300 (36%), Gaps = 57/300 (19%)

Query: 51  PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            D AF  L G  GEDG +Q  LE+ +IPY  SG   S ++++K+++  V    G      
Sbjct: 579 IDQAFIALQGRPGEDGQLQHELEVRKIPYNGSGPKTSQIAVNKVQTLDVWRRNGFIGPNQ 638

Query: 111 ILVNRFTMD---------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP---------- 151
           +LV++   +          +  +S P+V KP+     + + +I+    +           
Sbjct: 639 LLVSKRAFELSAEEAYQKIESRLSYPFVAKPIDQNGGIAVKIIRNRTDLDAYLRMMFRPH 698

Query: 152 ----------LDLLQSSSWNHGDQLLIEQYV--DGIELTCGVMGDASLDVTEIAVPKSDF 199
                     L L   S +   ++ L+E  +  DG      +        T     K   
Sbjct: 699 GADGAEYRKILKLKPKSEFPFAEEALLESMIGPDGARHFLEISATIMASPTVEGSLKYQI 758

Query: 200 YSYELKYSSLNSTHVLPAKIPLD------IYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
           +    +        V+PA+   +      +  +++     A + +   G++  D      
Sbjct: 759 FDL-AECIPGQVHPVIPARFSKNPQEQHFLSSQIKADFEKAARILNIFGLATIDGFVRIY 817

Query: 254 SR---KVFWLEINVQP---------------GMTPVSIFPEMAAYAGYSFRELLLWMVED 295
                +V  LE N  P               G+TP ++  ++   +   + EL+  +V +
Sbjct: 818 ENTNPEVILLEANTLPPLHYGRGVMQQSGLMGVTPFALLDQVLTES-RQYAELVPTLVAE 876



 Score = 44.0 bits (103), Expect = 0.027,   Method: Composition-based stats.
 Identities = 22/109 (20%), Positives = 41/109 (37%), Gaps = 13/109 (11%)

Query: 51  PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            + AF ++    GE G +Q  LE + IP++ S     A+  D+ R   V++  G      
Sbjct: 113 INFAFLLM---PGEFGALQLRLEEMRIPFSGSNSTLCAVLTDQARLVPVLAEKGFNTLRQ 169

Query: 111 ILVNRFTM----------DSQHLISPPYVIKPLKGGSSLGIIVIKKDQS 149
           I ++R               Q  +  P  I+     ++    V+ +   
Sbjct: 170 ITLSRQEWLGGNRDAILSKVQAEVGFPVSIRSTAQSATEHQNVVTEHDD 218


>gi|261885497|ref|ZP_06009536.1| D-alanyl-alanine synthetase A [Campylobacter fetus subsp.
           venerealis str. Azul-94]
          Length = 166

 Score =  100 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 34/152 (22%), Positives = 67/152 (44%), Gaps = 12/152 (7%)

Query: 25  ALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84
            L+  GF    I         +  L      N++ G  GEDG +  + E   + +    +
Sbjct: 18  HLKKGGFAAHGI-------FGMNDLNVHCYINLIRGRDGEDGKIAGMFEFYNVTFIGHRL 70

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
            AS +S +K  ++ +   C V   P  ++ R  +    L   P+++KP + GSS+G+ V+
Sbjct: 71  EASVMSFNKELTQLLAHKCAVKSLPYEMIKRGDIVKTEL---PFILKPARLGSSIGVSVV 127

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
           +   ++  D     ++     +L+E + +GI 
Sbjct: 128 RDISNL--DYALDVAFEFDKDILVEPFKEGIR 157


>gi|222148332|ref|YP_002549289.1| acetyl-CoA carboxylase biotin carboxylase subunit [Agrobacterium
           vitis S4]
 gi|221735320|gb|ACM36283.1| acetyl-CoA carboxylase biotin carboxylase [Agrobacterium vitis S4]
          Length = 450

 Score =  100 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 39/219 (17%), Positives = 87/219 (39%), Gaps = 17/219 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---S 110
            +H  +G   E+     IL+   I +         L  DK+ +K+   S G+PV P    
Sbjct: 79  AVHPGYGFLSENSKFADILDAHGITFIGPTADHIRLMGDKITAKETAKSLGIPVVPGSAG 138

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGDQL 166
            +     ++    I  P +IK   GG   G+ V   +  +   +     ++++    D +
Sbjct: 139 EVKPETALEIAREIGFPVLIKATAGGGGRGMKVANTEAELEEAVSTARSEAAAAFGNDAV 198

Query: 167 LIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
            +E+Y+     +   V GD   +   +        S + ++  +      PA +  +   
Sbjct: 199 YMEKYLGTPRHIEIQVFGDGEGNAIHLGERD---CSLQRRHQKVWEEANSPA-LTQEQRM 254

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           ++ ++   A + +  RG    +FL+   + + +++E+N 
Sbjct: 255 KIGQICADAMKKLKYRGAGTIEFLY--ENGEFYFIEMNT 291


>gi|146090477|ref|XP_001470586.1| hypothetical protein [Leishmania infantum JPCM5]
 gi|134070619|emb|CAM68967.1| conserved hypothetical protein [Leishmania infantum JPCM5]
          Length = 516

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 53/252 (21%), Positives = 98/252 (38%), Gaps = 22/252 (8%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGL---VQAILELLEIPYTHSGILASALSMDKMRS 96
           R +  ++   K D+ +N   G   ED     V   LE  ++PYT    ++    M K   
Sbjct: 61  RQIRQLVMSGKFDVFYNQCDGAKDEDRAGVEVVEALEEFKVPYTG--AISKYYEMSKPDM 118

Query: 97  KQVVSSCGVPVCPSILVNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154
           K V     +     +++       +    +  P +IK + G SS+G+    K   +   +
Sbjct: 119 KLVAYYYNIATANYVVLEPGADIERLCGDLQFPCIIKHISGYSSVGMDKSCKVHDMAQLV 178

Query: 155 LQSSSW-NHGDQLLIEQYVDGIELTCGVMGD-------ASLDVTEIAVPKS-DFYSYELK 205
            +++ +       L+E++V G E T     D             ++A P+  DF  ++LK
Sbjct: 179 DRATRFMAEYQFALVEEFVSGDEATILACSDSTQPEGVRVFPPVQVAFPEGEDFKHFQLK 238

Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAH-QAIGCRGISRSDFLFDPLSRK-VFWLEIN 263
           ++S                + +  +A  A  + +G  G  R D   D  +   V +LEIN
Sbjct: 239 WASYEGMQWTQVPQEDPALQNMIDIARSAFKRMMGGIGYGRIDVRIDRQNNNRVVFLEIN 298

Query: 264 VQPGMTPVSIFP 275
              G+    ++P
Sbjct: 299 PNCGI----MYP 306


>gi|330470535|ref|YP_004408278.1| carbamoyl-phosphate synthase subunit L [Verrucosispora maris
           AB-18-032]
 gi|328813506|gb|AEB47678.1| carbamoyl-phosphate synthase subunit L [Verrucosispora maris
           AB-18-032]
          Length = 675

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 43/217 (19%), Positives = 85/217 (39%), Gaps = 22/217 (10%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      +    + +      A A   DK+ +K +++  GVP+ PS   
Sbjct: 77  AVHPGYGFLAENADFATAVAEAGLTWVGPPAKAIAAMGDKLAAKTLLAEAGVPMLPSWT- 135

Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL-----QSSSWNHGDQLLI 168
                ++  +   P ++K   GG   G+ +++    +   +       +S++     + I
Sbjct: 136 -----EADQVTDFPVLVKASAGGGGRGMRIVRDPAGLAEAVAGARREAASAFG-DGTVFI 189

Query: 169 EQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227
           E+YV+ G  +   ++GD    V  +            K          PA +  ++   +
Sbjct: 190 ERYVERGRHVEVQIVGDRHGTVLALGERDCSIQRRHQK-----IVEEAPALLDAEVRARL 244

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            R A  A QA+   G    +FLF     + F+LE+N 
Sbjct: 245 HRAAVAAGQAVDYVGAGTVEFLFTE-EGEFFFLEMNT 280


>gi|168006265|ref|XP_001755830.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162693149|gb|EDQ79503.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 794

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 45/245 (18%), Positives = 93/245 (37%), Gaps = 23/245 (9%)

Query: 33  VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASAL 89
            S +D  + +   LA    D     +H  +G   E      + +   + +      A   
Sbjct: 148 ASYLDGSKILATALA-TGAD----AIHPGYGFLSESSKFAELCKQKGVIFIGPPADAIRA 202

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIK 145
             DK  +K ++S+ GVPV P         +      + IS P +IK  +GG   G+ ++ 
Sbjct: 203 MGDKSVAKSLMSAAGVPVVPGYHGEDQNPELLQAEANRISYPVLIKATQGGGGKGMRIVH 262

Query: 146 KD----QSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFY 200
            +    +S+     +S +     ++LIE+Y+     +   +  D   +         +  
Sbjct: 263 NEADFLESLASAQRESQAAFGDSRVLIEKYISRPRHIEVQIFADKHGNAV-----HLNER 317

Query: 201 SYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
              ++          PA  I  +  + + + A  A +A+G       +F+ D +S   ++
Sbjct: 318 DCSVQRRHQKIIEEAPAPNITPEFRQRIGQAAVDAAKAVGYVSAGTVEFIVDTISGDFYF 377

Query: 260 LEINV 264
           +E+N 
Sbjct: 378 MEMNT 382


>gi|322500070|emb|CBZ35146.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 516

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 53/252 (21%), Positives = 98/252 (38%), Gaps = 22/252 (8%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGL---VQAILELLEIPYTHSGILASALSMDKMRS 96
           R +  ++   K D+ +N   G   ED     V   LE  ++PYT    ++    M K   
Sbjct: 61  RQIRQLVMSGKFDVFYNQCDGAKDEDRAGVEVVEALEEFKVPYTG--AISKYYEMSKPDM 118

Query: 97  KQVVSSCGVPVCPSILVNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154
           K V     +     +++       +    +  P +IK + G SS+G+    K   +   +
Sbjct: 119 KLVAYYYNIATANYVVLEPGADIERLCGDLQFPCIIKHISGYSSVGMDKSCKVHDMAQLV 178

Query: 155 LQSSSW-NHGDQLLIEQYVDGIELTCGVMGD-------ASLDVTEIAVPKS-DFYSYELK 205
            +++ +       L+E++V G E T     D             ++A P+  DF  ++LK
Sbjct: 179 DRATRFMAEYQFALVEEFVSGDEATILACSDSTQPEGVRVFPPVQVAFPEGEDFKHFQLK 238

Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAH-QAIGCRGISRSDFLFDPLSRK-VFWLEIN 263
           ++S                + +  +A  A  + +G  G  R D   D  +   V +LEIN
Sbjct: 239 WASYEGMQWTQVPQEDPALQNMIDIARCAFKRMMGGIGYGRIDVRIDRQNNNRVVFLEIN 298

Query: 264 VQPGMTPVSIFP 275
              G+    ++P
Sbjct: 299 PNCGI----MYP 306


>gi|304391688|ref|ZP_07373630.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Ahrensia sp.
           R2A130]
 gi|303295917|gb|EFL90275.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Ahrensia sp.
           R2A130]
          Length = 448

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 85/220 (38%), Gaps = 18/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     ILE   I +        ++  DK+ +KQ     G+P+ P    
Sbjct: 77  AIHPGYGFLSENAKFAEILEAHNITFIGPSSAHISMMGDKIVAKQTAKELGIPIVPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
            +          + I  P +IK   GG   G+ V+  D  +   L     ++ +    D 
Sbjct: 137 AVTELDDARRIANDIGYPVIIKAASGGGGRGMKVVNNDDEMTTALQTTRTEAGAAFGDDS 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+Y+     +   VMGD       +        S + ++  +      PA + ++  
Sbjct: 197 VYIEKYLATPRHIEVQVMGDGKGRGVHLGERD---CSLQRRHQKVLEEANSPA-LTVEQR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +  +   A   +G  G    +FL+   + + +++E+N 
Sbjct: 253 ERIGGICAKAIGDMGYSGAGTIEFLY--ENGEFYFIEMNT 290


>gi|302188282|ref|ZP_07264955.1| Urea amidolyase-related protein [Pseudomonas syringae pv. syringae
           642]
          Length = 771

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 45/257 (17%), Positives = 89/257 (34%), Gaps = 30/257 (11%)

Query: 56  NVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
           N +H  +G   E+       E   I +         +   K  ++ +    GVP+     
Sbjct: 76  NAIHPGYGFLSENAAFAQACEDAGIAFVGPTPEQLRVFGLKHTARALARQHGVPMLEGTE 135

Query: 113 VN---RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
           +       + + H I  P ++K   GG  +G+ V +  + +                   
Sbjct: 136 LLDSLESAITAAHTIGYPVMLKSTAGGGGIGMRVCRSAEELADSFEAVKRLGQNNFSDAG 195

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+Y+     L   V GD   +V  + V          K             +P  + 
Sbjct: 196 VFIEKYIQRARHLEVQVFGDGQGEVLALGVRDCSVQRRNQKVL----EETPAPNLPHGMA 251

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
           +E+   A    +A+  R     +F+FD   ++ ++LE+N             +    G +
Sbjct: 252 EELCAAAVKLARAVNYRSAGTVEFVFDSDDQRFYFLEVNT-----------RLQVEHGVT 300

Query: 285 FR----ELLLWMVEDAS 297
            +    +L+ WMV+ A+
Sbjct: 301 EQVWGVDLVSWMVQLAA 317


>gi|282880013|ref|ZP_06288735.1| hypothetical protein HMPREF9019_0944 [Prevotella timonensis CRIS
           5C-B1]
 gi|281306127|gb|EFA98165.1| hypothetical protein HMPREF9019_0944 [Prevotella timonensis CRIS
           5C-B1]
          Length = 285

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 45/237 (18%), Positives = 92/237 (38%), Gaps = 14/237 (5%)

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            DG V+  + +L    T        L+ +K   K  +   G+     I +       +  
Sbjct: 59  RDGFVRYAISMLGCRNTVESDRTIVLTQNKEYVKHELQRYGILSPCKITIEEVKDGCK-- 116

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD-QLLIEQYVDGIELTCGVM 182
               Y +KP+ G  S  + V    QS      ++          +IE+++DG E T  ++
Sbjct: 117 ----YFVKPVFGEDSNFVGVDSVCQSKEEAWRKADEIQKAGFTPMIEEFIDGEEYTVALI 172

Query: 183 -GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241
             +  ++   I V     ++     +  +   +  A    ++      +A  A + +GC+
Sbjct: 173 RKEGKIETYPIKVHLFTPWNIMTHTAKFSEEEICEAVNDAELED----IAKKAFEVVGCK 228

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA-YAGYSFRELLLWMVEDAS 297
              R DF  D   R  + ++ N+ PG+ P   F +    +   S+ ++L  ++E A+
Sbjct: 229 HYMRIDFRRDSQGR-YYLIDFNLFPGLGPTDHFAKCINLHLNISYHDILTKIIETAT 284


>gi|222522065|gb|ACM62807.1| D-ala-D-ala ligase-like protein [Streptococcus uberis]
          Length = 118

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 33/120 (27%), Positives = 57/120 (47%), Gaps = 4/120 (3%)

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            P  +KP   GSS+GI   +  + +   +  +    +  ++LIEQ V   E+  G++G+ 
Sbjct: 1   FPIFVKPANMGSSVGISKAESIEGLREAIALAL--KYDSRILIEQGVVAREIEVGLLGNT 58

Query: 186 SLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
            +  T     +    FY Y+ KY     +  +PA I  DI  +++  A  A +AIG  G+
Sbjct: 59  KVTSTLPGEVIKDVAFYDYQAKYIDNKISMAIPAAINEDITSQMRYFAEQAFKAIGACGL 118


>gi|332528715|ref|ZP_08404692.1| biotin carboxylation domain-containing protein [Hylemonella
           gracilis ATCC 19624]
 gi|332041781|gb|EGI78130.1| biotin carboxylation domain-containing protein [Hylemonella
           gracilis ATCC 19624]
          Length = 1217

 Score = 99.8 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 42/255 (16%), Positives = 87/255 (34%), Gaps = 30/255 (11%)

Query: 58  LHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
           +H  +G   E+       E   I +         L   K  ++ +    G+P+     + 
Sbjct: 78  IHPGYGFLSENAAFAEACEQAGIAFVGPTPEQLRLFGLKHTARAIARQQGLPLLEGTELL 137

Query: 115 R---FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQLL 167
                 + +   +  P ++K   GG  +G+ V      +                   + 
Sbjct: 138 DTLDAALSASRKVGYPIMLKSTAGGGGIGMRVCHSASELREAYEAVRRLGQNNFSDSGVF 197

Query: 168 IEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE 226
           IEQY++    L   + GD   +V  + V          K             +P  + +E
Sbjct: 198 IEQYIERARHLEVQIFGDGRGEVIALGVRDCSVQRRNQKVL----EETPAPNLPEGMAEE 253

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           +   A    +A+  R     +F++D  +R+ ++LE+N             +    G + +
Sbjct: 254 LCAAAIRLGKAVNYRSAGTVEFVYDDQARRFYFLEVNT-----------RLQVEHGVTEQ 302

Query: 287 ----ELLLWMVEDAS 297
               +L+ WM+E A+
Sbjct: 303 VWGVDLVRWMIELAA 317


>gi|302851487|ref|XP_002957267.1| hypothetical protein VOLCADRAFT_98341 [Volvox carteri f.
           nagariensis]
 gi|300257362|gb|EFJ41611.1| hypothetical protein VOLCADRAFT_98341 [Volvox carteri f.
           nagariensis]
          Length = 543

 Score = 99.8 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 50/287 (17%), Positives = 98/287 (34%), Gaps = 52/287 (18%)

Query: 28  DAGFKVSQIDVDR-----SVGLVLAHLKPDLAFNVLHGNFGEDGL---VQAILELLEIPY 79
           +  +  + I + +      +  ++     D+  N+  G + ED     V   LE L +PY
Sbjct: 60  EGRYDWTNIFLKKASSSADLVKLVNSGLYDVYLNLCDGAWDEDRAGKDVVEALERLNVPY 119

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------------ISPP 127
           T +          K+  K+     G+ V   + V       +              +  P
Sbjct: 120 TGADAAF--YEPSKIDMKKAAYFYGIGVPAWVHVQGGPGQEEAGVAEVLGPPERGGLRFP 177

Query: 128 YVIKPLKGGSSLGIIV---IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
            ++K   G  S+G+     +   Q +   +        G   L+E+++ G E T  V+ +
Sbjct: 178 LIVKHPSGYGSVGMSKKSKVTNAQELRHQVSY-FVREFGG-ALVEEFIVGREFTVLVVEE 235

Query: 185 AS------------------------LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
            +                          V  +  P  DF  ++LK+   ++   LP + P
Sbjct: 236 PTKEAVAGAEADDYEPQLSDLIPVAYTPVECVFGPGEDFKHFDLKFLEADTLEWLPCREP 295

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPG 267
             + + ++  A     A       R DF  +  +  ++ LEIN   G
Sbjct: 296 -QLAERLKAAARDFFLATRGVSYGRCDFRVEDGTGDIYLLEINPNCG 341


>gi|146095686|ref|XP_001467639.1| methylcrotonoyl-coa carboxylase biotinylated subunitprotein-like
           protein [Leishmania infantum JPCM5]
 gi|134072004|emb|CAM70704.1| methylcrotonoyl-coa carboxylase biotinylated subunitprotein-like
           protein [Leishmania infantum JPCM5]
 gi|322501642|emb|CBZ36724.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 687

 Score = 99.8 bits (248), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 92/220 (41%), Gaps = 16/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      +    I +      A +L   K  SK+++ + GVPV P    
Sbjct: 88  AIHPGYGFLSENADFADAVTRSGIEFIGPPASAISLMGSKSESKRIMEAAGVPVVPGYYG 147

Query: 114 NR----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGDQ 165
                 F  +  + +  P +IK + GG   G+ ++++ + +         +++++   D+
Sbjct: 148 ENQNVSFLAEEANKVGFPILIKAVSGGGGKGMKIVERPEDLAFMLESAKREAANFFKDDR 207

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           +++E+YV     + C +  D                S + +Y  +         + +++ 
Sbjct: 208 VILERYVKRPRHIECQIFFDKHGRGVFFFERD---CSVQRRYQKVL-EEAPAPHLSMEMR 263

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +  +A  A +A+G  G    +F+FD  +   +++E+N 
Sbjct: 264 QRIGEVALQAAKAVGYVGAGTVEFIFDTSTGDFYFMEMNT 303


>gi|320589745|gb|EFX02201.1| 3-methylcrotonyl-carboxylase subunit alpha [Grosmannia clavigera
           kw1407]
          Length = 750

 Score = 99.8 bits (248), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 46/245 (18%), Positives = 86/245 (35%), Gaps = 23/245 (9%)

Query: 34  SQIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALS 90
           S +D D+ + L L H         LH  +G   E+           I +      A A  
Sbjct: 86  SYLDGDKIIALALQHG-----IQALHPGYGFLSENAAFAERCAAAGITFVGPPAQAMADM 140

Query: 91  MDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKK 146
            DK RSK ++ + GVP  P         +        +  P ++K ++GG   G+ +++ 
Sbjct: 141 GDKARSKAIMLAAGVPCVPGYHGPDQAPEQLAVHAAKVGYPVLLKSVRGGGGKGMRIVQT 200

Query: 147 DQSIPLDLLQSSSWNH------GDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDF 199
                  L  + +         G+ +L+E+Y+     +   V  D       +       
Sbjct: 201 PDEFEAQLRSARAEARASFGDGGEVMLVERYIVRPRHVEVQVFADKHGTAVALGERDCSI 260

Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
                K             +  D+  ++   A  A  A+G  G    +F+ D  + + F+
Sbjct: 261 QRRHQKIL----EESPAPDLGDDLRHDLWDRARTAALAVGYVGAGTVEFILDRDTGEFFF 316

Query: 260 LEINV 264
           +E+N 
Sbjct: 317 MEMNT 321


>gi|58045588|gb|AAW65102.1| vancomycin resistance protein [Enterococcus gallinarum]
          Length = 128

 Score = 99.8 bits (248), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 34/121 (28%), Positives = 63/121 (52%), Gaps = 8/121 (6%)

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIK 131
           PY    + ASAL M+K    Q+  + G+   P++L++R+  D   +         P  IK
Sbjct: 1   PYVGCHVAASALCMNKWLLHQLADTMGIASAPTLLLSRYENDPATIDRFIQDHGFPIFIK 60

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P + GSS GI  +    ++   L  ++++ +G  +LI++ + GIE+ CG++G+  L +  
Sbjct: 61  PNEAGSSKGITKVTDKTALQSAL--TTAFAYGSTVLIQKAIAGIEIGCGILGNEQLTIGA 118

Query: 192 I 192
            
Sbjct: 119 C 119


>gi|325292689|ref|YP_004278553.1| Biotin carboxylase [Agrobacterium sp. H13-3]
 gi|325060542|gb|ADY64233.1| Biotin carboxylase [Agrobacterium sp. H13-3]
          Length = 448

 Score = 99.4 bits (247), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 40/219 (18%), Positives = 87/219 (39%), Gaps = 17/219 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---S 110
            +H  +G   E+     IL+   I +         L  DK+ +KQ     G+PV P    
Sbjct: 77  AVHPGYGFLSENAKFADILDAHGITFIGPTAEHIRLMGDKITAKQTAQELGIPVVPGSDG 136

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGDQL 166
            +     ++    I  P +IK   GG   G+ V K +  +   +     ++++    D +
Sbjct: 137 EVKPENALEIARTIGFPVLIKATAGGGGRGMKVAKTEADLDEAVSTARSEAAAAFGNDAV 196

Query: 167 LIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
            +E+Y+     +   V GD   +   +        S + ++  +      PA + ++   
Sbjct: 197 YMEKYLGKPRHIEVQVFGDGEGNAIHLGERD---CSLQRRHQKVLEEANSPA-LTVEQRM 252

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           ++  +   A + +  RG    +FL+   + + +++E+N 
Sbjct: 253 KIGEICASAMRKLKYRGAGTIEFLY--ENGEFYFIEMNT 289


>gi|307322827|ref|ZP_07602134.1| ATP-dependent carboxylate-amine ligase domain protein ATP-grasp
           [Sinorhizobium meliloti AK83]
 gi|306891523|gb|EFN22402.1| ATP-dependent carboxylate-amine ligase domain protein ATP-grasp
           [Sinorhizobium meliloti AK83]
          Length = 492

 Score = 99.4 bits (247), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 45/259 (17%), Positives = 89/259 (34%), Gaps = 33/259 (12%)

Query: 23  ASALEDAGFKVSQIDVDRSVGLVLAHLK----PDLA----FNVLHGNFGED--GLVQAIL 72
            + L     +  ++D D    L+    +     D+     F V     GE     V  + 
Sbjct: 121 YNYLATENTEAIRVDTDDLDALIRECSRLRETYDIVGITGFPV----PGEAVYATVAKLC 176

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQHLISPPYVI 130
               +P       +     DK   +Q+++  GVPV    L    T    +   I  P ++
Sbjct: 177 RHFGLP--GPNPASIDQCCDKFNQRQLLAEAGVPVPAYRLAANATEVESAAAEIGLPVIL 234

Query: 131 KPLKGGSSLGIIVIKKDQSIPLD----LLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186
           KP  G  S G+ + +    +       L     W    ++L+E++  G   T  +MG+  
Sbjct: 235 KPAVGNGSTGVRLCRDAGELAEHTTYLLGGKYIWQTSPRILVEEFAQGPYFTADIMGNEV 294

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR-GISR 245
           + V          + Y+         ++ PA +  D    +  ++    +A+    G + 
Sbjct: 295 VAVGAATFGPPPHFVYD--------EYIYPAPLTDDQRTRIVDVSLSCLRALDLNWGPTN 346

Query: 246 SDFLFDPLSRKVFWLEINV 264
            +F +         +E+N 
Sbjct: 347 IEFRWTERG--PVVIEVNP 363


>gi|157873596|ref|XP_001685305.1| methylcrotonoyl-coa carboxylase biotinylated subunitprotein-like
           protein [Leishmania major]
 gi|68128376|emb|CAJ08598.1| methylcrotonoyl-coa carboxylase biotinylated subunitprotein-like
           protein [Leishmania major strain Friedlin]
          Length = 687

 Score = 99.4 bits (247), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 92/220 (41%), Gaps = 16/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      +    I +      A +L   K  SK+++ + GVPV P    
Sbjct: 88  AIHPGYGFLSENADFAEAVTRSGIEFIGPPASAISLMGSKSESKRIMEAAGVPVVPGYYG 147

Query: 114 NR----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS----IPLDLLQSSSWNHGDQ 165
                 F  +  + +  P +IK + GG   G+ ++++ +     +     +++++   D+
Sbjct: 148 ENQNVSFLAEEANRVGFPILIKAVSGGGGKGMKIVERPEDFAFMLESAKREAANFFKDDR 207

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           +++E+YV     + C +  D                S + +Y  +         + +++ 
Sbjct: 208 VILERYVKRPRHIECQIFFDKHGRGVFFFERD---CSVQRRYQKVL-EEAPAPHLSMEMR 263

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +  +A  A +A+G  G    +F+FD  +   +++E+N 
Sbjct: 264 QRIGEVALQAAKAVGYVGAGTVEFIFDTSTGDFYFMEMNT 303


>gi|302132807|ref|ZP_07258797.1| urea amidolyase-related protein [Pseudomonas syringae pv. tomato
           NCPPB 1108]
          Length = 1226

 Score = 99.4 bits (247), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 74/220 (33%), Gaps = 15/220 (6%)

Query: 56  NVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
           N +H  +G   E+       E   I +         +   K  ++ +    GVP+     
Sbjct: 76  NAIHPGYGFLSENAAFAQACEDAGIAFVGPTPEQLRVFGLKHTARALARQHGVPLLEGTE 135

Query: 113 VN---RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
           +       + +   I  P ++K   GG  +G+ V +  + +                   
Sbjct: 136 LLDSLESAIAAARDIGYPVMLKSTAGGGGIGMRVCRSAEELADSFEAVKRLGQNNFSDAG 195

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+Y+     L   V GD   +V  + V          K             +P  + 
Sbjct: 196 VFIEKYIQRARHLEVQVFGDGQGEVLALGVRDCSVQRRNQKVL----EETPAPNLPEGMA 251

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            E+   A    +A+  R     +F+FD   ++ ++LE+N 
Sbjct: 252 DELCAAAIKLAKAVNYRSAGTVEFVFDSEDQRFYFLEVNT 291


>gi|213971144|ref|ZP_03399263.1| urea amidolyase-related protein [Pseudomonas syringae pv. tomato
           T1]
 gi|301381839|ref|ZP_07230257.1| urea amidolyase-related protein [Pseudomonas syringae pv. tomato
           Max13]
 gi|213924133|gb|EEB57709.1| urea amidolyase-related protein [Pseudomonas syringae pv. tomato
           T1]
          Length = 1226

 Score = 99.4 bits (247), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 74/220 (33%), Gaps = 15/220 (6%)

Query: 56  NVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
           N +H  +G   E+       E   I +         +   K  ++ +    GVP+     
Sbjct: 76  NAIHPGYGFLSENAAFAQACEDAGIAFVGPTPEQLRVFGLKHTARALARQHGVPLLEGTE 135

Query: 113 VN---RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
           +       + +   I  P ++K   GG  +G+ V +  + +                   
Sbjct: 136 LLDSLESAIAAARDIGYPVMLKSTAGGGGIGMRVCRSAEELADSFEAVKRLGQNNFSDAG 195

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+Y+     L   V GD   +V  + V          K             +P  + 
Sbjct: 196 VFIEKYIQRARHLEVQVFGDGQGEVLALGVRDCSVQRRNQKVL----EETPAPNLPEGMA 251

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            E+   A    +A+  R     +F+FD   ++ ++LE+N 
Sbjct: 252 DELCAAAIKLAKAVNYRSAGTVEFVFDSEDQRFYFLEVNT 291


>gi|28871385|ref|NP_794004.1| urea amidolyase-like protein [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|28854636|gb|AAO57699.1| urea amidolyase-related protein [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 1226

 Score = 99.4 bits (247), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 74/220 (33%), Gaps = 15/220 (6%)

Query: 56  NVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
           N +H  +G   E+       E   I +         +   K  ++ +    GVP+     
Sbjct: 76  NAIHPGYGFLSENAAFAQACEDAGIAFVGPTPEQLRVFGLKHTARALARQHGVPLLEGTE 135

Query: 113 VN---RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
           +       + +   I  P ++K   GG  +G+ V +  + +                   
Sbjct: 136 LLDSLESAIAAARDIGYPVMLKSTAGGGGIGMRVCRSAEELADSFEAVKRLGQNNFSDAG 195

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+Y+     L   V GD   +V  + V          K             +P  + 
Sbjct: 196 VFIEKYIQRARHLEVQVFGDGQGEVLALGVRDCSVQRRNQKVL----EETPAPNLPEGMA 251

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            E+   A    +A+  R     +F+FD   ++ ++LE+N 
Sbjct: 252 DELCAAAIKLAKAVNYRSAGTVEFVFDSEDQRFYFLEVNT 291


>gi|255038681|ref|YP_003089302.1| D-alanine--D-alanine ligase [Dyadobacter fermentans DSM 18053]
 gi|254951437|gb|ACT96137.1| D-alanine--D-alanine ligase [Dyadobacter fermentans DSM 18053]
          Length = 566

 Score = 99.4 bits (247), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 43/222 (19%), Positives = 75/222 (33%), Gaps = 62/222 (27%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50
           + +  GG S ERE+S + GK     L+ + F+   + VD     +L   +          
Sbjct: 3   IGIFFGGPSREREISYAGGKTAFEYLDKSLFEPVPVFVDSFGRFILLQNELMYLSEIREF 62

Query: 51  ------------------------------------------PDLAFNVLHGNFGEDGLV 68
                                                      D AF  +HG   EDG +
Sbjct: 63  YPAPGIQKDGFKTYVESFPELAAAPVPSEIGKQINPSEFKQYFDFAFLAMHGPDCEDGAI 122

Query: 69  QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-------- 120
           Q +LE  +IPY+  G++ SA+ +DK+    +++        S  +               
Sbjct: 123 QGLLEWYKIPYSGPGLMGSAVGIDKILQNDMIALVNGQEKKSWTLKYSQWVPRDYPLLFQ 182

Query: 121 --QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160
             +  +  P V K    GSS+G+ ++K D         +  +
Sbjct: 183 VLKKHLGLPLVFKAPHQGSSIGVAIVKDDSLEEFIAAVNQCF 224



 Score = 93.6 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 42/194 (21%), Positives = 78/194 (40%), Gaps = 18/194 (9%)

Query: 118 MDSQHLISPPYVI--K----PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
            +    I  P ++  K    P    S L I   + ++   L    +      DQ+L+E++
Sbjct: 250 ANLDEGIGFPVILDGKTIYHPTTLISELEIYFSEGNEHALLSSSNAE-----DQVLVEEF 304

Query: 172 VDGIELTCGVM--GDA---SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE 226
           V G E +CG +   D    +L  +E+ +   + + +  KY    S    P    L+  +E
Sbjct: 305 VSGQEFSCGCIQFDDGSPLALPPSEV-IKMVEVFDFNTKYKPGASRKRTPVGTTLEKNRE 363

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           +Q++     + +G     R D    P    +   + N  PGM+P S   +  A  G +  
Sbjct: 364 IQQMIAATFRQLGIDACVRIDGFLKP-DGTILLHDPNTIPGMSPTSFIFKQMAEIGLTVT 422

Query: 287 ELLLWMVEDASCLR 300
           + L ++V  +   R
Sbjct: 423 QALTYLVRQSLRER 436


>gi|330502304|ref|YP_004379173.1| biotin carboxylation domain-containing protein [Pseudomonas
           mendocina NK-01]
 gi|328916590|gb|AEB57421.1| biotin carboxylation domain-containing protein [Pseudomonas
           mendocina NK-01]
          Length = 1231

 Score = 99.0 bits (246), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 41/256 (16%), Positives = 86/256 (33%), Gaps = 30/256 (11%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       E   I +         +   K  ++ +    GVP+     +
Sbjct: 77  AIHPGYGFLSENAAFAETCEAAGIAFVGPTPEQLRVFGLKHTARALAKQHGVPMLEGTEL 136

Query: 114 NR---FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQL 166
                  + +   +  P ++K   GG  +G+ V +  + +                   +
Sbjct: 137 LENLDAALVAGEQVGYPVMLKSTAGGGGIGMRVCRSAEELSDAFEAVKRLGQNNFSDSGV 196

Query: 167 LIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
            IE+Y+     L   V GD   +V  + V          K             +P  +  
Sbjct: 197 FIEKYIQRARHLEVQVFGDGQGEVIALGVRDCSVQRRNQKVL----EETPAPNLPAGMAD 252

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285
           E+   A    +A+  R     +F++D  + + ++LE+N             +    G + 
Sbjct: 253 ELCAAAIKLAKAVNYRSTGTVEFVYDSEAERFYFLEVNT-----------RLQVEHGVTE 301

Query: 286 R----ELLLWMVEDAS 297
           +    +L+ WM+E A+
Sbjct: 302 QVWGVDLVRWMIELAA 317


>gi|157871427|ref|XP_001684263.1| hypothetical protein [Leishmania major strain Friedlin]
 gi|68127331|emb|CAJ05644.1| conserved hypothetical protein [Leishmania major strain Friedlin]
          Length = 516

 Score = 99.0 bits (246), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 55/252 (21%), Positives = 98/252 (38%), Gaps = 22/252 (8%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGL---VQAILELLEIPYTHSGILASALSMDKMRS 96
           R +  ++   K D+ +N   G   ED     V   LE  ++PYT    ++    M K   
Sbjct: 61  RQIRQLVMSGKFDVFYNQCDGAKDEDRAGVEVVEALEEFKVPYTG--AISKYYEMSKPDM 118

Query: 97  KQVVSSCGVPVCPSILVNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154
           K V     +     I++            +  P +IK + G SS+G+    K   +   +
Sbjct: 119 KLVAYYYNIATANYIVLAPGDDIESLCGDLQFPCIIKHISGYSSVGMDKSCKVYDMAHLV 178

Query: 155 LQSSSW-NHGDQLLIEQYVDGIELTCGVMGD-------ASLDVTEIAVPKS-DFYSYELK 205
            +++ +       L+E++V+G E T     D             ++A P+  DF  ++LK
Sbjct: 179 DRAARFMAEYQFALVEEFVNGDEATILACSDSTQPEGVRVFPPVQVAFPEGEDFKHFQLK 238

Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAH-QAIGCRGISRSDFLFDPLSR-KVFWLEIN 263
           ++S                + +  +A  A  + +G  G  R D   D     KV +LEIN
Sbjct: 239 WASYEGMKWTQVPQEDPAMQNMIDIARSAFKRMMGGVGYGRIDVRIDRQKNHKVVFLEIN 298

Query: 264 VQPGMTPVSIFP 275
              G+    ++P
Sbjct: 299 PNCGI----MYP 306


>gi|154148767|ref|YP_001407085.1| biotin carboxylase [Campylobacter hominis ATCC BAA-381]
 gi|153804776|gb|ABS51783.1| acetyl-CoA carboxylase, biotin carboxylase [Campylobacter hominis
           ATCC BAA-381]
          Length = 444

 Score = 99.0 bits (246), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 50/260 (19%), Positives = 92/260 (35%), Gaps = 33/260 (12%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS- 110
           D  F   +G   E+     I E   + +      A AL  DK ++K  +   GVPV P  
Sbjct: 77  DAVFPG-YGFLSENQNFAEICEKEGLKFIGPSTSAMALMSDKSKAKAFMKRAGVPVVPGS 135

Query: 111 ---ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL----DLLQSSSWNHG 163
              +            I  P ++K   GG   G+ V+ K + +         ++ +    
Sbjct: 136 DGALKDVNEAKKLAEEIGYPVILKAAAGGGGRGMRVVNKPEDLEKNFWSAESEALAAFGD 195

Query: 164 DQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD 222
             + IE+Y      +   ++GD   +V  I            K             +   
Sbjct: 196 GTMYIEKYFTSPRHIEVQILGDEHGNVVHIGERDCSLQRRHQK----LIEESPAVILDEK 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY-- 280
             +E+  +A  A +AIG       +FL+D   +K +++E+N +              +  
Sbjct: 252 TREELHEVAVKATKAIGYSSAGTFEFLYDRKDKKFYFIEMNTR----------LQVEHCV 301

Query: 281 ----AGYSFRELLLWMVEDA 296
               +G    +L+ WM++ A
Sbjct: 302 SEMVSGL---DLIEWMIKIA 318


>gi|114704667|ref|ZP_01437575.1| acetyl-CoA carboxylase [Fulvimarina pelagi HTCC2506]
 gi|114539452|gb|EAU42572.1| acetyl-CoA carboxylase [Fulvimarina pelagi HTCC2506]
          Length = 448

 Score = 99.0 bits (246), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 88/220 (40%), Gaps = 18/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     ILE  ++ +            DK+ +K+     G+PV P    
Sbjct: 77  AVHPGYGFLSENARFADILEAHQLTFIGPTASHIRTMGDKIEAKRTAERLGIPVVPGSPG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
            +  +   M     I  P ++K   GG   G+ + + ++ +P  L     ++ +    D 
Sbjct: 137 AVTEDGEAMKIAKDIGFPVLVKASAGGGGRGMKIARTEKELPHALATARSEAGAAFGDDA 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+Y++    +   V GD + +   +        S + +   +      PA +     
Sbjct: 197 VYIEKYLEKPRHIEVQVFGDGAGNAIHLGERD---CSLQRRNQKVWEEANSPA-LKPQQR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +++  +   A + +  RG    +FL+   + + F++E+N 
Sbjct: 253 EKIGTICAEAMKGLQYRGAGTIEFLY--ENGEFFFIEMNT 290


>gi|302059008|ref|ZP_07250549.1| urea amidolyase-related protein [Pseudomonas syringae pv. tomato
           K40]
          Length = 621

 Score = 99.0 bits (246), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 74/220 (33%), Gaps = 15/220 (6%)

Query: 56  NVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
           N +H  +G   E+       E   I +         +   K  ++ +    GVP+     
Sbjct: 76  NAIHPGYGFLSENAAFAQACEDAGIAFVGPTPEQLRVFGLKHTARALARQHGVPLLEGTE 135

Query: 113 VN---RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
           +       + +   I  P ++K   GG  +G+ V +  + +                   
Sbjct: 136 LLDSLESAIAAARDIGYPVMLKSTAGGGGIGMRVCRSAEELADSFEAVKRLGQNNFSDAG 195

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+Y+     L   V GD   +V  + V          K             +P  + 
Sbjct: 196 VFIEKYIQRARHLEVQVFGDGQGEVLALGVRDCSVQRRNQKVL----EETPAPNLPEGMA 251

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            E+   A    +A+  R     +F+FD   ++ ++LE+N 
Sbjct: 252 DELCAAAIKLAKAVNYRSAGTVEFVFDSEDQRFYFLEVNT 291


>gi|58045584|gb|AAW65100.1| vancomycin resistance protein [Enterococcus gallinarum]
          Length = 135

 Score = 98.7 bits (245), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 36/135 (26%), Positives = 69/135 (51%), Gaps = 10/135 (7%)

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIKPLKGGSSLG 140
           SAL M+K    Q+  + G+   P++L++R+  D   +         P  IKP + GSS G
Sbjct: 1   SALCMNKWLLHQLADTMGIASAPTLLLSRYENDPATIDRFIQDHGFPIFIKPNEAGSSKG 60

Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK--SD 198
           I  +    ++   L  ++++ +G  +LI++ + GIE+ CG++G+  L +           
Sbjct: 61  ITKVTDKTALQSAL--TTAFAYGSTVLIQKAIAGIEIGCGILGNEQLTIGACDAISLVDG 118

Query: 199 FYSYELKYSSLNSTH 213
           F+ +E KY  +++T 
Sbjct: 119 FFDFEEKYQLISATI 133


>gi|330964545|gb|EGH64805.1| urea amidolyase-like protein [Pseudomonas syringae pv. actinidiae
           str. M302091]
          Length = 772

 Score = 98.7 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 74/220 (33%), Gaps = 15/220 (6%)

Query: 56  NVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
           N +H  +G   E+       E   I +         +   K  ++ +    GVP+     
Sbjct: 76  NAIHPGYGFLSENAAFAQACEDAGIAFVGPTPEQLRVFGLKHTARALARQHGVPLLEGTE 135

Query: 113 VN---RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
           +       + +   I  P ++K   GG  +G+ V +  + +                   
Sbjct: 136 LLDSLESAIVAARDIGYPVMLKSTAGGGGIGMRVCRSAEELADSFEAVKRLGQNNFSDAG 195

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+Y+     L   V GD   +V  + V          K             +P  + 
Sbjct: 196 VFIEKYIQRARHLEVQVFGDGQGEVLALGVRDCSVQRRNQKVL----EETPAPNLPEGMA 251

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            E+   A    +A+  R     +F+FD   ++ ++LE+N 
Sbjct: 252 DELCAAAIKLAKAVNYRSAGTVEFVFDSEDQRFYFLEVNT 291


>gi|254780268|ref|YP_003064681.1| acetyl-CoA carboxylase biotin carboxylase subunit [Candidatus
           Liberibacter asiaticus str. psy62]
 gi|254039945|gb|ACT56741.1| acetyl-CoA carboxylase biotin carboxylase subunit [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 443

 Score = 98.3 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 39/218 (17%), Positives = 79/218 (36%), Gaps = 16/218 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--SI 111
            +H  +G   E+     ILE   I +         +  DK+ +K+     G+PV P    
Sbjct: 77  AIHPGYGFLSENAKFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGE 136

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQLL 167
           +     M     I  P ++K   GG   G+ +   +  +   +     ++ +    D + 
Sbjct: 137 VYPHTAMPIAKEIGFPVLVKASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVY 196

Query: 168 IEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE 226
           IE+Y++    +   + GD   +            S + +   +      P  I      E
Sbjct: 197 IEKYLENPRHIEVQIFGDGMGNAIHFGERD---CSVQRRNQKIWEEAHSPV-ISAQDRTE 252

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +      A + I  RG    +FL+   + + +++E+N 
Sbjct: 253 IGETCVKAMKKIDYRGAGTIEFLY--ENGQFYFIEMNT 288


>gi|109043037|ref|XP_001096717.1| PREDICTED: methylcrotonoyl-CoA carboxylase subunit alpha,
           mitochondrial-like [Macaca mulatta]
          Length = 797

 Score = 98.3 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 84/221 (38%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H  +G   E+     + +   I +      A      K  SK ++++ GVPV      
Sbjct: 196 AIHPGYGFLSENMEFAELCKQEGIIFIGPPPSAIRDMGIKSTSKSIMAAAGVPVVEGYHG 255

Query: 113 ---VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
               ++   +    I  P +IK ++GG   G+ +++ +Q     L  +          D 
Sbjct: 256 EDQSDQCLKEHAGRIGYPVMIKAVRGGGGKGMRIVRSEQEFQEQLESARREAKKSFNDDA 315

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           +LIE++VD    +   V GD   +   +           ++          PA  I  ++
Sbjct: 316 VLIEKFVDTPRHVEVQVFGDHHGNAVYL-----FERDCSVQRRHQKIIEEAPAPGIKPEV 370

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            K++   A  A +A+   G    +F+ D      +++E+N 
Sbjct: 371 RKKLGEAAVRAAKAVNYVGAGTVEFIMDSKHN-FYFMEMNT 410


>gi|119356886|ref|YP_911530.1| carbamoyl-phosphate synthase L chain, ATP-binding [Chlorobium
           phaeobacteroides DSM 266]
 gi|119354235|gb|ABL65106.1| Carbamoyl-phosphate synthase L chain, ATP-binding protein
           [Chlorobium phaeobacteroides DSM 266]
          Length = 485

 Score = 98.3 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 42/222 (18%), Positives = 86/222 (38%), Gaps = 17/222 (7%)

Query: 56  NVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
           N +H  +G   E+     +++  ++ +            DK+ SK++     VP  P I 
Sbjct: 79  NAIHPGWGFLSENAKFAQMVQDSDLIWIGPSPEVIHKMGDKIESKKIAKEAKVPTIPGIN 138

Query: 113 VNRFTMD-----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----G 163
             +   +      +  ++ P +IK   GG   G++ +  D  +   L Q+ S        
Sbjct: 139 SPKTAEEIRTWMQEEDVALPIIIKASSGGGGKGMVRVTHDSELENALAQARSEAKKSFGN 198

Query: 164 DQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD 222
           D++L+E++++ G  +   ++ D   +V  +   +        K             I  D
Sbjct: 199 DEILVEKFIEKGRHIEVQIIADQHGNVIHLFERECTLQRRNQKII----EEAPSPSIDDD 254

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           I + +   A    + IG       +FL D  + K ++LE+N 
Sbjct: 255 IRQSICETAVQLMRTIGYSSAGTVEFLLDAATGKFYFLEVNT 296


>gi|307322648|ref|ZP_07601982.1| ATP-dependent carboxylate-amine ligase domain protein ATP-grasp
           [Sinorhizobium meliloti AK83]
 gi|306891710|gb|EFN22562.1| ATP-dependent carboxylate-amine ligase domain protein ATP-grasp
           [Sinorhizobium meliloti AK83]
          Length = 492

 Score = 98.3 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 39/255 (15%), Positives = 83/255 (32%), Gaps = 25/255 (9%)

Query: 23  ASALEDAGFKVSQIDVDRSVGLVLAHLK----PDLAFNVLHGNFGED--GLVQAILELLE 76
              L     +  ++D      L+L   +     D+     H N GE        +     
Sbjct: 121 YDYLATENVEAIRVDTGDLDALILECSRLRETYDIVGITGHSNPGEAVYATAAKLCRHFG 180

Query: 77  IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL--ISPPYVIKPLK 134
           +P       +     DK   +Q++   GVPV    +        +    I  P ++KP  
Sbjct: 181 LP--GPNPASIDQCCDKFTQRQLLEGAGVPVPAYRMATNAAEVERAAAEIGLPVILKPAV 238

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSS----SWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190
           G  S G+ + +  + +    +        W    ++L+E++  G      +MG+  +++ 
Sbjct: 239 GNGSSGVRLCRDAEELAEHTVYLLGGTYEWQTSPRILVEEFAQGPYFLADIMGNTIIEIG 298

Query: 191 EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR-GISRSDFL 249
                    + Y          +  PA +  D    +  ++     A+    G +  +F 
Sbjct: 299 AGNFGPPPHFVYR--------EYTYPASLTDDQRTRITDVSLSCLGALDLHWGPANIEFR 350

Query: 250 FDPLSRKVFWLEINV 264
           +         +E+N 
Sbjct: 351 WTERG--PVVIEVNP 363


>gi|189424657|ref|YP_001951834.1| acetyl-CoA carboxylase, biotin carboxylase [Geobacter lovleyi SZ]
 gi|189420916|gb|ACD95314.1| acetyl-CoA carboxylase, biotin carboxylase [Geobacter lovleyi SZ]
          Length = 446

 Score = 97.9 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 78/220 (35%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+     I E   I +      +  +  DK+ ++Q V   GVP+ P    
Sbjct: 77  AIHPGYGFLSENAKFAEICEQCGITFIGPSAESMRVMGDKISARQAVIEHGVPILPGTKE 136

Query: 114 NRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
           N  T+D        I  P +IK   GG   G+ ++    ++      + +          
Sbjct: 137 NVKTVDEAVKIAKQIGFPVIIKATAGGGGRGMKIVHSQATLANAYATAKAEAQAGFGNPD 196

Query: 166 LLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+Y V+   +   V+ D   +   +            K             +  +  
Sbjct: 197 VYIEKYCVEPRHVEIQVLADKHGNCIHLGERDCSIQRRHQKII----EEAPCPVLTPETR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K +   A  A +A+    +   +FL D    + +++E+N 
Sbjct: 253 KAMGDAAIKAAKAVNYSSVGTVEFLLDKS-GEFYFMEMNT 291


>gi|71733839|ref|YP_276110.1| urea amidolyase-like protein [Pseudomonas syringae pv. phaseolicola
           1448A]
 gi|71554392|gb|AAZ33603.1| urea amidolyase homologue [Pseudomonas syringae pv. phaseolicola
           1448A]
          Length = 1266

 Score = 97.9 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 43/256 (16%), Positives = 86/256 (33%), Gaps = 30/256 (11%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       E   I +         +   K  ++ +    GVP+     +
Sbjct: 77  AIHPGYGFLSENAAFAQACEDAGIAFVGPTPEQLRVFGLKHTARALARQHGVPMLEGTEL 136

Query: 114 N---RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQL 166
                  + +   I  P ++K   GG  +G+ V +  + +                   +
Sbjct: 137 LDSVESAIAAARDIGYPVMLKSTAGGGGIGMRVCRSAEELADSFEAVKRLGQNNFSDAGV 196

Query: 167 LIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
            IE+Y+     L   V GD   +V  + V          K             +P  +  
Sbjct: 197 FIEKYIQRARHLEVQVFGDGQGEVLALGVRDCSVQRRNQKVL----EETPAPNLPDGMAD 252

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285
           E+   A    +A+  R     +F+FD   ++ ++LE+N             +    G + 
Sbjct: 253 ELCAAAIKLARAVNYRSAGTVEFVFDSEDQRFYFLEVNT-----------RLQVEHGVTE 301

Query: 286 R----ELLLWMVEDAS 297
           +    +L+ WMV+ A+
Sbjct: 302 QVWGVDLVSWMVQLAA 317


>gi|225851167|ref|YP_002731401.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Persephonella
           marina EX-H1]
 gi|225645341|gb|ACO03527.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Persephonella
           marina EX-H1]
          Length = 478

 Score = 97.9 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 83/220 (37%), Gaps = 19/220 (8%)

Query: 58  LHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS---- 110
           +H  +G   E+    +  E   + +        AL  DK+ SK+ +   GVPV P     
Sbjct: 82  IHPGYGFLSENADFASYCEKRGLIFIGPKPEHIALFGDKIASKKAMKEVGVPVLPGTDEP 141

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL----DLLQSSSWNHGDQL 166
           I    +       I  P +IK   GG   G+ +++K+            ++  +     +
Sbjct: 142 ITDIDYAKKIAREIGFPVIIKAAYGGGGRGMRIVEKESDFEELFRSATAEAEKFFGKGDV 201

Query: 167 LIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIY 224
            IE+YV     +   +M D   +V  +            K        + P  ++  ++ 
Sbjct: 202 FIEKYVKNPRHIEIQIMADKYGNVIHLGERDCSIQRRHQK-----IVEIAPSPRLNDEVR 256

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +E+ R+A  +   +G   +   +FL D      +++E+N 
Sbjct: 257 RELYRVAVKSMFKLGYESVGTLEFLVDEDDN-FYFIEMNT 295


>gi|330989059|gb|EGH87162.1| urea amidolyase-like protein [Pseudomonas syringae pv. lachrymans
           str. M301315]
          Length = 1230

 Score = 97.9 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 43/256 (16%), Positives = 86/256 (33%), Gaps = 30/256 (11%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       E   I +         +   K  ++ +    GVP+     +
Sbjct: 77  AIHPGYGFLSENAAFAQACEDAGIAFVGPTPEQLRVFGLKHTARALARQHGVPMLEGTEL 136

Query: 114 N---RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQL 166
                  + +   I  P ++K   GG  +G+ V +  + +                   +
Sbjct: 137 LDSVESAIAAARDIGYPVMLKSTAGGGGIGMRVCRSAEELADSFEAVKRLGQNNFSDAGV 196

Query: 167 LIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
            IE+Y+     L   V GD   +V  + V          K             +P  +  
Sbjct: 197 FIEKYIQRARHLEVQVFGDGQGEVLALGVRDCSVQRRNQKVL----EETPAPNLPDGMAD 252

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285
           E+   A    +A+  R     +F+FD   ++ ++LE+N             +    G + 
Sbjct: 253 ELCAAAIKLARAVNYRSAGTVEFVFDSEDQRFYFLEVNT-----------RLQVEHGVTE 301

Query: 286 R----ELLLWMVEDAS 297
           +    +L+ WMV+ A+
Sbjct: 302 QVWGVDLVSWMVQLAA 317


>gi|220925868|ref|YP_002501170.1| acetyl-CoA carboxylase, biotin carboxylase [Methylobacterium
           nodulans ORS 2060]
 gi|219950475|gb|ACL60867.1| acetyl-CoA carboxylase, biotin carboxylase [Methylobacterium
           nodulans ORS 2060]
          Length = 451

 Score = 97.9 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 85/220 (38%), Gaps = 18/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     +L    I +         L  DK+ +K+  +  G+P  P    
Sbjct: 77  AVHPGYGFLSENARFAEVLGHHRIAFIGPKAEHIRLMGDKIEAKRTATRLGIPCVPGSEG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
            +            I  P +IK   GG   G+ V + ++ +   L     ++ +    D 
Sbjct: 137 GVADPDEARRIAADIGYPVLIKAASGGGGRGMKVARSEEDLETALATARTEAKAAFGDDA 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+Y++    +   V+GD       +A       S + ++  +      PA +  ++ 
Sbjct: 197 VYIEKYLEKPRHIEVQVLGDGRGGAIHLAERD---CSLQRRHQKVWEEGPSPA-LNAEMR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +  +   A Q +G  G    +FL+     + +++E+N 
Sbjct: 253 ERIGGICARAMQELGYTGAGTIEFLY--EDGEFYFIEMNT 290


>gi|257057021|ref|YP_003134853.1| acetyl/propionyl-CoA carboxylase, alpha subunit [Saccharomonospora
           viridis DSM 43017]
 gi|256586893|gb|ACU98026.1| acetyl/propionyl-CoA carboxylase, alpha subunit [Saccharomonospora
           viridis DSM 43017]
          Length = 665

 Score = 97.9 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 86/220 (39%), Gaps = 16/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+       E   + +    + A     DK+R+K+ VS+ GVPV P    
Sbjct: 79  AVHPGYGFLAENAEFAKACEAAGLVFIGPTVAAIEAMGDKIRAKETVSAAGVPVVPGVND 138

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQL 166
           +      + +   +  P ++KP  GG   G+ ++     +P  +  +          D+L
Sbjct: 139 VSDVDSIVAAAERVGYPVLLKPSAGGGGKGMRLVHTPAELPAAVESAQREARGAFGDDRL 198

Query: 167 LIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
           L+E++V +   +   V+ D    V  +   +        K           A +  +   
Sbjct: 199 LVERFVAEPRHIEIQVLADTHGTVVHLGERECSLQRRHQKI----VEEAPSAVLDAETRA 254

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLS-RKVFWLEINV 264
            + + A  A +++G  G    +F+    +  + F+LE+N 
Sbjct: 255 RMGKAAVEAARSVGYVGAGTVEFIVPASAPEEFFFLEMNT 294


>gi|145294862|ref|YP_001137683.1| pyruvate carboxylase [Corynebacterium glutamicum R]
 gi|20531757|gb|AAM27458.1|AF503915_1 pyruvate carboxylase [Corynebacterium crenatum]
 gi|50428375|dbj|BAD30009.1| pyruvate carboxylase [Corynebacterium glutamicum]
 gi|140844782|dbj|BAF53781.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 1140

 Score = 97.5 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 40/239 (16%), Positives = 86/239 (35%), Gaps = 17/239 (7%)

Query: 35  QIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKM 94
            +D+D  +G     +K D  +   +G   E+  +        I +         L+ DK 
Sbjct: 71  YLDIDEIIGAA-KKVKADAIYPG-YGFLSENAQLARECAENGITFIGPTPEVLDLTGDKS 128

Query: 95  RSKQVVSSCGVPVCPSILVNRFTMD---SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
           R+       G+PV      ++   D   S    + P  +K + GG   G+  +     + 
Sbjct: 129 RAVTAAKKAGLPVLAESTPSKNIDDIVKSAEGQTYPIFVKAVAGGGGRGMRFVSSPDELR 188

Query: 152 ----LDLLQSSSWNHGDQLLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
                   ++ +      + +E+  ++   +   ++GD + +V  +           L+ 
Sbjct: 189 KLATEASREAEAAFGDGSVYVERAVINPQHIEVQILGDRTGEVVHLYE-----RDCSLQR 243

Query: 207 SSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
                  + PA+ +  ++   +   A    ++IG +G    +FL D     VF  E+N 
Sbjct: 244 RHQKVVEIAPAQHLDPELRDRICADAVKFCRSIGYQGAGTVEFLVDEKGNHVFI-EMNP 301


>gi|157164344|ref|YP_001467578.1| biotin carboxylase [Campylobacter concisus 13826]
 gi|112801126|gb|EAT98470.1| acetyl-CoA carboxylase, biotin carboxylase [Campylobacter concisus
           13826]
          Length = 443

 Score = 97.5 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 86/224 (38%), Gaps = 15/224 (6%)

Query: 50  KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109
           + D  F   +G   E+     I    +I +    + A AL  DK ++KQV+   GVPV P
Sbjct: 75  EADAIFPG-YGFLSENQNFVEICSHHKIKFIGPSVAAMALMSDKSKAKQVMQRAGVPVIP 133

Query: 110 S----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH--- 162
                +   +   +    I  P ++K   GG   G+ V++K+  +      + S      
Sbjct: 134 GSDGAVADTKAAKELAKKIGYPVILKAAAGGGGRGMRVVEKEADLEKAFWSAESEAMSAF 193

Query: 163 -GDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
               + +E+Y+ +   +   ++GD+  +V  I            K             + 
Sbjct: 194 GDGTMYMEKYILNPRHIEVQIIGDSHGNVLHIGERDCSMQRRHQK----LIEESPAILLD 249

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
               + +   A  A +AIG  G    +FL D  +   +++E+N 
Sbjct: 250 EKTRERLHETAIKAAKAIGYEGAGTFEFLVDK-NLDFYFIEMNT 292


>gi|222522029|gb|ACM62789.1| D-ala-D-ala ligase-like protein [Streptococcus uberis]
 gi|222522031|gb|ACM62790.1| D-ala-D-ala ligase-like protein [Streptococcus uberis]
 gi|222522033|gb|ACM62791.1| D-ala-D-ala ligase-like protein [Streptococcus uberis]
 gi|222522037|gb|ACM62793.1| D-ala-D-ala ligase-like protein [Streptococcus uberis]
 gi|222522039|gb|ACM62794.1| D-ala-D-ala ligase-like protein [Streptococcus uberis]
 gi|222522043|gb|ACM62796.1| D-ala-D-ala ligase-like protein [Streptococcus uberis]
 gi|222522045|gb|ACM62797.1| D-ala-D-ala ligase-like protein [Streptococcus uberis]
 gi|222522047|gb|ACM62798.1| D-ala-D-ala ligase-like protein [Streptococcus uberis]
 gi|222522049|gb|ACM62799.1| D-ala-D-ala ligase-like protein [Streptococcus uberis]
 gi|222522055|gb|ACM62802.1| D-ala-D-ala ligase-like protein [Streptococcus uberis]
 gi|222522059|gb|ACM62804.1| D-ala-D-ala ligase-like protein [Streptococcus uberis]
 gi|222522061|gb|ACM62805.1| D-ala-D-ala ligase-like protein [Streptococcus uberis]
 gi|222522067|gb|ACM62808.1| D-ala-D-ala ligase-like protein [Streptococcus uberis]
 gi|222522069|gb|ACM62809.1| D-ala-D-ala ligase-like protein [Streptococcus uberis]
          Length = 118

 Score = 97.5 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 32/120 (26%), Positives = 56/120 (46%), Gaps = 4/120 (3%)

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            P  +KP   GSS+GI   +  + +   +  +    +  ++LIEQ V   E+  G++G+ 
Sbjct: 1   FPIFVKPANMGSSVGISKAESIEGLREAIALAL--KYDSRILIEQGVVAREIEVGLLGNT 58

Query: 186 SLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
            +  T     +    FY Y+ KY     +  +PA I   I  +++  A  A +AIG  G+
Sbjct: 59  KVASTLPGEVIKDVAFYDYQAKYIDNKISMAIPATIDEGITSQMRYFAEQAFKAIGACGL 118


>gi|222522035|gb|ACM62792.1| D-ala-D-ala ligase-like protein [Streptococcus uberis]
 gi|222522053|gb|ACM62801.1| D-ala-D-ala ligase-like protein [Streptococcus uberis]
 gi|222522057|gb|ACM62803.1| D-ala-D-ala ligase-like protein [Streptococcus uberis]
          Length = 118

 Score = 97.5 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 32/120 (26%), Positives = 57/120 (47%), Gaps = 4/120 (3%)

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            P  +KP   GSS+GI   +  + +   +  +    +  ++LIEQ V   E+  G++G+ 
Sbjct: 1   FPIFVKPANMGSSVGISKAESIEGLREAIALAL--KYDSRILIEQGVVAREIEVGLLGNT 58

Query: 186 SLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           ++  T     +    FY Y+ KY     +  +PA I   I  +++  A  A +AIG  G+
Sbjct: 59  NVASTLPGEVIKDVAFYDYQAKYIDNKISMAIPATIDEGITSQMRYFAEQAFKAIGACGL 118


>gi|182676800|ref|YP_001830908.1| acetyl-CoA carboxylase, biotin carboxylase [Beijerinckia indica
           subsp. indica ATCC 9039]
 gi|182636647|gb|ACB97419.1| acetyl-CoA carboxylase, biotin carboxylase [Beijerinckia indica
           subsp. indica ATCC 9039]
          Length = 525

 Score = 97.5 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 77/220 (35%), Gaps = 18/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     IL    I +         +  DK+ +K+   S G+P  P    
Sbjct: 77  AVHPGYGFLSENAHFAEILAAHNIAFIGPKPEHIRIMGDKIEAKRTAISLGIPCVPGSSG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
            +      +D    I  P +IK   GG   G+ V          +     ++ +      
Sbjct: 137 ALNHAEEALDIAEGIGFPVLIKAASGGGGRGMKVAHSRDEFASAVATASSEAKAAFGDGS 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+Y++    +   V+GD   +   +            K             +     
Sbjct: 197 VYLEKYLENPRHIEIQVLGDGRGNAVHLGERDCSLQRRHQK----VWEESPSPVLDETQR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +E+  +  +A + +G  G+   +FL+     K +++E+N 
Sbjct: 253 EEICEICAVAMRKLGYLGVGTIEFLY--KDGKFYFIEMNT 290


>gi|332214366|ref|XP_003256308.1| PREDICTED: LOW QUALITY PROTEIN: methylcrotonoyl-CoA carboxylase
           subunit alpha, mitochondrial-like [Nomascus leucogenys]
          Length = 801

 Score = 97.5 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 86/221 (38%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H  +G   E+     + +   I +      A      K  SK ++++ GVPV      
Sbjct: 200 AIHPGYGFLSENMEFAELCKQEGIIFIGPPPSAIRDMGIKSTSKSIMAAAGVPVVEGYHG 259

Query: 113 ---VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
               ++   +    I  P +IK ++GG   G+ +++ +Q     L     ++    + D 
Sbjct: 260 EDQSDQCLKEHAGRIGYPVMIKAVRGGGGKGMRIVRSEQEFQEQLESVRREAKKSFNDDA 319

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           +LIE++VD    +   V GD   +   +           ++          PA  I  ++
Sbjct: 320 VLIEKFVDTPRHVEVQVFGDHHGNAVYL-----FERDCSVQRRHQKIIEEAPAPGIKPEV 374

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            K++   A  A +A+   G    +F+ D      +++E+N 
Sbjct: 375 RKKLGEAAVRAAKAVNYVGAGTVEFIMDSKHN-FYFMEMNT 414


>gi|330950084|gb|EGH50344.1| Urea amidolyase-related protein [Pseudomonas syringae Cit 7]
          Length = 807

 Score = 97.5 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 43/256 (16%), Positives = 87/256 (33%), Gaps = 30/256 (11%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       E   I +         +   K  ++ +    GVP+     +
Sbjct: 77  AIHPGYGFLSENAAFAQACEDAGIAFVGPTPEQLRVFGLKHTARALARQHGVPMLEGTEL 136

Query: 114 N---RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQL 166
                  + +   I  P ++K   GG  +G+ V +  + +                   +
Sbjct: 137 LDSLESAIAAARTIGYPVMLKSTAGGGGIGMRVCRSAEELADSFEAVKRLGQNNFSDAGV 196

Query: 167 LIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
            IE+Y+     L   V GD   +V  + V          K             +P  + +
Sbjct: 197 FIEKYIQRARHLEVQVFGDGQGEVLALGVRDCSVQRRNQKVL----EETPAPNLPHGMAE 252

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285
           E+   A    +A+  R     +F+FD   ++ ++LE+N             +    G + 
Sbjct: 253 ELCAAAVKLARAVNYRSAGTVEFVFDSDDQRFYFLEVNT-----------RLQVEHGVTE 301

Query: 286 R----ELLLWMVEDAS 297
           +    +L+ WMV+ A+
Sbjct: 302 QVWGVDLVSWMVQLAA 317


>gi|229916255|ref|YP_002884901.1| acetyl-CoA carboxylase, biotin carboxylase [Exiguobacterium sp.
           AT1b]
 gi|229467684|gb|ACQ69456.1| acetyl-CoA carboxylase, biotin carboxylase [Exiguobacterium sp.
           AT1b]
          Length = 447

 Score = 97.5 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 37/214 (17%), Positives = 78/214 (36%), Gaps = 12/214 (5%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS---ILVNR 115
           +G   E+     + E   I +      A      K  +K+ +   GVPV P    ++ + 
Sbjct: 80  YGFLAENAEFAEMCEACGIQFVGPSSYAIRKMGIKDEAKRTMIESGVPVVPGSSGVVTDE 139

Query: 116 FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQLLIEQY 171
             M+    +  P +IK   GG   GI V + +  +   L+    ++        + +E++
Sbjct: 140 EAMELAREMGYPVIIKATAGGGGRGIRVARDEDELVSGLVATRKEAKQAFGNGDVYLEKF 199

Query: 172 VDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
           ++    +   V+ D   +V  +            +             I     + +   
Sbjct: 200 IESFRHVEVQVLADQFGNVIHLGERDCTI----QRRMQKLVEEAPSPAIDETTRQLMGDA 255

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           A  A +AI   G    +F++ P S + +++E+N 
Sbjct: 256 AVKAAKAIQYSGAGTIEFIYVPESNEFYFMEMNT 289


>gi|320327172|gb|EFW83186.1| hypothetical protein PsgRace4_25546 [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 1302

 Score = 97.5 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 43/256 (16%), Positives = 86/256 (33%), Gaps = 30/256 (11%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       E   I +         +   K  ++ +    GVP+     +
Sbjct: 77  AIHPGYGFLSENAAFAQACEDAGIAFVGPTPEQLRVFGLKHTARALARQHGVPMLEGTEM 136

Query: 114 N---RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQL 166
                  + +   I  P ++K   GG  +G+ V +  + +                   +
Sbjct: 137 LDSVESAIAAARDIGYPVMLKSTAGGGGIGMRVCRSAEELADSFEAVKRLGQNNFSDAGV 196

Query: 167 LIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
            IE+Y+     L   V GD   +V  + V          K             +P  +  
Sbjct: 197 FIEKYIQRARHLEVQVFGDGQGEVLALGVRDCSVQRRNQKVL----EETPAPNLPDGMAD 252

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285
           E+   A    +A+  R     +F+FD   ++ ++LE+N             +    G + 
Sbjct: 253 ELCAAAIKLARAVNYRSAGTVEFVFDSEDQRFYFLEVNT-----------RLQVEHGVTE 301

Query: 286 R----ELLLWMVEDAS 297
           +    +L+ WMV+ A+
Sbjct: 302 QVWGVDLVSWMVQLAA 317


>gi|302037782|ref|YP_003798104.1| acetyl-Coa carboxylase, biotin carboxylase [Candidatus Nitrospira
           defluvii]
 gi|300605846|emb|CBK42179.1| Acetyl-CoA carboxylase, biotin carboxylase [Candidatus Nitrospira
           defluvii]
          Length = 449

 Score = 97.5 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 85/220 (38%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     + E + + +        AL  DK ++++VV+  G+PV P    
Sbjct: 77  AIHPGYGFLSENAHFAEVCESIGVKFIGPTSENIALMGDKSKAREVVAKKGLPVTPGSPG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGD 164
            +   +   ++   I  P +IK   GG   G+ V+ K + +      + +     + H  
Sbjct: 137 ELRSEQDAQEAAKTIGFPVIIKASAGGGGRGMRVVNKPEELARAFQAAQAEAKSTFGHDG 196

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             L   +++   +   ++ D    V  +            K             I  ++ 
Sbjct: 197 VYLERYFLEPRHIEVQIVADNRGHVVHLGERDCSIQRRHQK----LVEETPSPAIDEELR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +E+ R+A  A +AI    +   +FL D   R  F++E+N 
Sbjct: 253 REIGRVAVQAVKAIRYCNVGTVEFLLDK-DRNFFFMEVNT 291


>gi|302756307|ref|XP_002961577.1| hypothetical protein SELMODRAFT_77392 [Selaginella moellendorffii]
 gi|300170236|gb|EFJ36837.1| hypothetical protein SELMODRAFT_77392 [Selaginella moellendorffii]
          Length = 747

 Score = 97.5 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 44/225 (19%), Positives = 83/225 (36%), Gaps = 22/225 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+           I +      A +L  DK  SK+++S   VPV P    
Sbjct: 112 AIHPGYGFLSENSKFAQACHESGITFIGPSAAAISLMGDKSASKKLMSGANVPVVPGYHG 171

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQS----IPLDLLQSSSWNHGDQ 165
           +  + +        I  P +IKP+ GG   G+ ++         +   L +S++     +
Sbjct: 172 DDQSHELLQSEADRIGYPVLIKPVLGGGGKGMRIVHSRDEFLDSLRSALRESAAAFGDTR 231

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDI 223
           +LIE+Y+     +   + GD   +V              ++          PA +   D 
Sbjct: 232 VLIEKYIAQPRHIEVQIFGDRFGNVV-----HLFERDCSVQRRHQKIIEEAPAPLMSDDF 286

Query: 224 YKEVQRLAFLAHQ----AIGCRGISRSDFLFDPLSRKVFWLEINV 264
              + + A  A +     I C      +F+ D  +   F++E+N 
Sbjct: 287 RNSIGQAAVNAAKVSSFVICCCCELPVEFIVDTATGDFFFMEMNT 331


>gi|222522041|gb|ACM62795.1| D-ala-D-ala ligase-like protein [Streptococcus uberis]
 gi|222522051|gb|ACM62800.1| D-ala-D-ala ligase-like protein [Streptococcus uberis]
 gi|222522063|gb|ACM62806.1| D-ala-D-ala ligase-like protein [Streptococcus uberis]
          Length = 118

 Score = 97.1 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 32/120 (26%), Positives = 56/120 (46%), Gaps = 4/120 (3%)

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            P  +KP   GSS+GI   +  + +   +  +    +  ++LIEQ V   E+  G++G+ 
Sbjct: 1   FPIFVKPANMGSSVGISKAESIEGLREAIALAL--KYDSRILIEQGVVAREIEVGLLGNT 58

Query: 186 SLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
            +  T     +    FY Y+ KY     +  +PA I   I  +++  A  A +AIG  G+
Sbjct: 59  KVASTLPGEVIKDVAFYDYQAKYIDNKISMAIPAAIDEGITSQMRYFAEQAFKAIGACGL 118


>gi|25027265|ref|NP_737319.1| pyruvate carboxylase [Corynebacterium efficiens YS-314]
 gi|23492546|dbj|BAC17519.1| pyruvate carboxylase [Corynebacterium efficiens YS-314]
          Length = 1168

 Score = 97.1 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 40/240 (16%), Positives = 89/240 (37%), Gaps = 19/240 (7%)

Query: 35  QIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKM 94
            +D+D  +      +K D  +   +G   E+  +        I +         L+ DK 
Sbjct: 100 YLDIDEIINAA-KKVKADAVYPG-YGFLSENAQLARECAENGITFIGPTPEVLDLTGDKS 157

Query: 95  RSKQVVSSCGVPV----CPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150
           ++       G+PV     PS  ++     ++   + P  +K + GG   G+  ++K + +
Sbjct: 158 KAVSAAKKAGLPVLAESTPSTDIDEIVKSAEGQ-TYPIFVKAVAGGGGRGMRFVEKPEDL 216

Query: 151 PL----DLLQSSSWNHGDQLLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205
                    ++ +      + +E+  +    +   ++GD + DV  +           L+
Sbjct: 217 RELAREASREAEAAFGDGSVYVERAVIKPQHIEVQILGDHTGDVIHLYE-----RDCSLQ 271

Query: 206 YSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
                   + PA+ +  ++   +   A    ++IG +G    +FL D     VF  E+N 
Sbjct: 272 RRHQKVVEIAPAQHLDPELRDRICADAVKFCKSIGYQGAGTVEFLVDEAGNHVFI-EMNP 330


>gi|259506599|ref|ZP_05749501.1| pyruvate carboxylase [Corynebacterium efficiens YS-314]
 gi|259165797|gb|EEW50351.1| pyruvate carboxylase [Corynebacterium efficiens YS-314]
          Length = 1139

 Score = 97.1 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 40/240 (16%), Positives = 89/240 (37%), Gaps = 19/240 (7%)

Query: 35  QIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKM 94
            +D+D  +      +K D  +   +G   E+  +        I +         L+ DK 
Sbjct: 71  YLDIDEIINAA-KKVKADAVYPG-YGFLSENAQLARECAENGITFIGPTPEVLDLTGDKS 128

Query: 95  RSKQVVSSCGVPV----CPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150
           ++       G+PV     PS  ++     ++   + P  +K + GG   G+  ++K + +
Sbjct: 129 KAVSAAKKAGLPVLAESTPSTDIDEIVKSAEGQ-TYPIFVKAVAGGGGRGMRFVEKPEDL 187

Query: 151 PL----DLLQSSSWNHGDQLLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205
                    ++ +      + +E+  +    +   ++GD + DV  +           L+
Sbjct: 188 RELAREASREAEAAFGDGSVYVERAVIKPQHIEVQILGDHTGDVIHLYE-----RDCSLQ 242

Query: 206 YSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
                   + PA+ +  ++   +   A    ++IG +G    +FL D     VF  E+N 
Sbjct: 243 RRHQKVVEIAPAQHLDPELRDRICADAVKFCKSIGYQGAGTVEFLVDEAGNHVFI-EMNP 301


>gi|195970180|ref|NP_385425.3| acetyl-CoA carboxylase biotin carboxylase subunit [Sinorhizobium
           meliloti 1021]
 gi|15074251|emb|CAC45898.1| Probable biotin carboxylase [Sinorhizobium meliloti 1021]
          Length = 449

 Score = 97.1 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 38/219 (17%), Positives = 88/219 (40%), Gaps = 17/219 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---S 110
            +H  +G   E+     IL+   I +         L  DK+ +K+     G+PV P    
Sbjct: 79  AVHPGYGFLSENAKFADILDAHGITFIGPTAEHIRLMGDKITAKKTAEELGIPVVPGSDG 138

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQL 166
            +     ++    I  P +IK   GG   G+ V + ++ +   +  + S        D +
Sbjct: 139 EVRPENALEIARQIGFPVLIKATAGGGGRGMKVARTEEELENAVATARSEAAAAFGNDAV 198

Query: 167 LIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
            +E+++     +   V+GD   +   +        S + ++  +      PA + ++   
Sbjct: 199 YMEKFLGKPRHIEIQVVGDGEGNAIHLGERD---CSLQRRHQKVWEEANSPA-LNVEQRM 254

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           ++ ++   A + +  RG    +FL+   + + +++E+N 
Sbjct: 255 KIGQVCADAMKKLKYRGAGTIEFLY--ENGEFYFIEMNT 291


>gi|307301143|ref|ZP_07580912.1| acetyl-CoA carboxylase, biotin carboxylase [Sinorhizobium meliloti
           BL225C]
 gi|307317876|ref|ZP_07597314.1| acetyl-CoA carboxylase, biotin carboxylase [Sinorhizobium meliloti
           AK83]
 gi|306896638|gb|EFN27386.1| acetyl-CoA carboxylase, biotin carboxylase [Sinorhizobium meliloti
           AK83]
 gi|306904098|gb|EFN34684.1| acetyl-CoA carboxylase, biotin carboxylase [Sinorhizobium meliloti
           BL225C]
          Length = 447

 Score = 97.1 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 38/219 (17%), Positives = 88/219 (40%), Gaps = 17/219 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---S 110
            +H  +G   E+     IL+   I +         L  DK+ +K+     G+PV P    
Sbjct: 77  AVHPGYGFLSENAKFADILDAHGITFIGPTAEHIRLMGDKITAKKTAEELGIPVVPGSDG 136

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQL 166
            +     ++    I  P +IK   GG   G+ V + ++ +   +  + S        D +
Sbjct: 137 EVRPENALEIARQIGFPVLIKATAGGGGRGMKVARTEEELENAVATARSEAAAAFGNDAV 196

Query: 167 LIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
            +E+++     +   V+GD   +   +        S + ++  +      PA + ++   
Sbjct: 197 YMEKFLGKPRHIEIQVVGDGEGNAIHLGERD---CSLQRRHQKVWEEANSPA-LNVEQRM 252

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           ++ ++   A + +  RG    +FL+   + + +++E+N 
Sbjct: 253 KIGQVCADAMKKLKYRGAGTIEFLY--ENGEFYFIEMNT 289


>gi|322492801|emb|CBZ28080.1| conserved hypothetical protein [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 516

 Score = 97.1 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 51/252 (20%), Positives = 97/252 (38%), Gaps = 22/252 (8%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGL---VQAILELLEIPYTHSGILASALSMDKMRS 96
           R +  ++   K D+ +N   G   ED     V   LE  ++P+T    ++    M K   
Sbjct: 61  RQIRQLVMSGKFDVFYNQCDGAKDEDRAGVEVVEALEEFKVPHTG--AISKYYEMSKPDM 118

Query: 97  KQVVSSCGVPVCPSILVNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154
           K V     +      ++            +  P ++K + G SS+G+    K   +   +
Sbjct: 119 KLVAYYYNIATANYAVLELGDDIESLCGKLQFPCIVKHISGYSSVGMDKSCKVYDMARLV 178

Query: 155 LQSSSW-NHGDQLLIEQYVDGIELTCGVMGD-------ASLDVTEIAVPKS-DFYSYELK 205
            +++ +       L+E++V G E T     D             ++  P+  DF  ++LK
Sbjct: 179 DRATRFMAEYQFALVEEFVSGDEATILACNDSTQPEGVRVFPPVQVTFPEGEDFKHFQLK 238

Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAH-QAIGCRGISRSDFLFDPLS-RKVFWLEIN 263
           ++S                +++  +A  A  + +G  G  R D   D  +  KV +LEIN
Sbjct: 239 WASYEGMKWTQVPQEDPAMQDMIDIARSAFKRMMGGIGYGRIDVRIDRQNHNKVVFLEIN 298

Query: 264 VQPGMTPVSIFP 275
              G+    ++P
Sbjct: 299 PNCGI----MYP 306


>gi|20126704|dbj|BAB88903.1| pyruvate carboxylase [Corynebacterium efficiens]
          Length = 1139

 Score = 97.1 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 40/240 (16%), Positives = 89/240 (37%), Gaps = 19/240 (7%)

Query: 35  QIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKM 94
            +D+D  +      +K D  +   +G   E+  +        I +         L+ DK 
Sbjct: 71  YLDIDEIINAA-KKVKADAVYPG-YGFLSENAQLARECAENGITFIGPTPEVLDLTGDKS 128

Query: 95  RSKQVVSSCGVPV----CPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150
           ++       G+PV     PS  ++     ++   + P  +K + GG   G+  ++K + +
Sbjct: 129 KAVSAAKKAGLPVLAESTPSTDIDEIVKSAEGQ-TYPIFVKAVAGGGGRGMRFVEKPEDL 187

Query: 151 PL----DLLQSSSWNHGDQLLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205
                    ++ +      + +E+  +    +   ++GD + DV  +           L+
Sbjct: 188 RELAREASREAEAAFGDGSVYVERAVIKPQHIEVQILGDHTGDVIHLYE-----RDCSLQ 242

Query: 206 YSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
                   + PA+ +  ++   +   A    ++IG +G    +FL D     VF  E+N 
Sbjct: 243 RRHQKVVEIAPAQHLDPELRDRICADAVKFCKSIGYQGAGTVEFLVDEAGNHVFI-EMNP 301


>gi|319898970|ref|YP_004159063.1| Biotin carboxylase [Bartonella clarridgeiae 73]
 gi|319402934|emb|CBI76485.1| Biotin carboxylase [Bartonella clarridgeiae 73]
          Length = 452

 Score = 97.1 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 43/220 (19%), Positives = 92/220 (41%), Gaps = 18/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     ILE   I +            DK+ +K+ V   G+P+ P    
Sbjct: 77  AVHPGYGFLSENAKFADILESHNITFIGPTAAHIRTMGDKIEAKKTVKKLGIPIVPGSNE 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
            I      +   + I  P +IK   GG   G+ V+  ++ + +       ++S+  + D 
Sbjct: 137 AIAEEEEALRIANEIGYPVIIKASAGGGGCGMKVVHSERKLLIAFKTARSEASAAFNDDA 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+Y++    +   V+GD + +   +        S + ++  +      PA +     
Sbjct: 197 VYIEKYLEKPRHIEIQVIGDGAGNAIHLGERD---CSLQRRHQKVWEEANSPA-LNETER 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K++  +   A   +G RG+   +FL+   + + +++E+N 
Sbjct: 253 KKIGNVVANACAKLGYRGVGTVEFLY--ENGEFYFIEMNT 290


>gi|114569815|ref|YP_756495.1| acetyl-CoA carboxylase biotin carboxylase subunit [Maricaulis maris
           MCS10]
 gi|114340277|gb|ABI65557.1| acetyl-CoA carboxylase, biotin carboxylase [Maricaulis maris MCS10]
          Length = 448

 Score = 97.1 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 89/220 (40%), Gaps = 18/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---- 109
            +H  +G   E+     I+E   + +         +  DK+ +KQ V   G+PV P    
Sbjct: 77  AIHPGYGFLSENARFAEIVEAHGLAFIGPTAAHIRMMGDKITAKQAVMDAGIPVVPGSEG 136

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
            +      +     I  P +IK   GG   G+ V +   ++   +     ++ +      
Sbjct: 137 GVDTYEDAVPIAEKIGYPVLIKAASGGGGRGMKVAETAANLKEAMDTASTEALAAFGDGT 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+Y+     +   ++ D   +V  +        S + ++  +      PA +  D  
Sbjct: 197 VYIEKYLGRPRHIEIQILADTHGNVVHLGERD---CSLQRRHQKILEEAPSPA-LNDDDR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K++  +   A +AIG RG+   +FL+   + + +++E+N 
Sbjct: 253 KKIGDVVRRAIEAIGYRGVGTIEFLW--ENGEFYFIEMNT 290


>gi|1857218|gb|AAB49635.1| vancomycin resistance protein [Enterococcus casseliflavus]
          Length = 126

 Score = 97.1 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 36/126 (28%), Positives = 62/126 (49%), Gaps = 8/126 (6%)

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISP 126
           EL+++PY   G+ ASAL M+K    Q   + GV   P+IL+         +         
Sbjct: 1   ELMKLPYVGCGVAASALCMNKWLLHQAAEAIGVQSAPTILLTNQANQQDQIEAFIQTHGF 60

Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186
           P   KP + GSS GI  +   + I   L +  ++ +   +L+++ + G+E+ CG++G+ S
Sbjct: 61  PVFFKPNEAGSSKGITKVTCVEEIASALKE--AFTYCSAVLLQKNIAGVEIGCGILGNDS 118

Query: 187 LDVTEI 192
           L V   
Sbjct: 119 LTVGAC 124


>gi|289628117|ref|ZP_06461071.1| hypothetical protein PsyrpaN_23798 [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|330871268|gb|EGH05977.1| urea amidolyase-like protein [Pseudomonas syringae pv. aesculi str.
           0893_23]
          Length = 768

 Score = 96.7 bits (240), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 43/256 (16%), Positives = 87/256 (33%), Gaps = 30/256 (11%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       E   I +         +   K  ++ +    GVP+     +
Sbjct: 77  AIHPGYGFLSENTAFAQACEDAGIAFVGPTPEQLRVFGLKHTARALARQHGVPMLEGTEL 136

Query: 114 N---RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQL 166
                  + +   I  P ++K   GG  +G+ V +  + +                   +
Sbjct: 137 LDSVESAIAAARDIGYPVMLKSTAGGGGIGMRVCRSAEELADSFEAVKRLGQNNFSDAGV 196

Query: 167 LIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
            IE+Y+     L   V GD   +V  + V          K             +P  + +
Sbjct: 197 FIEKYIQRARHLEVQVFGDGQGEVLALGVRDCSVQRRNQKVL----EETPAPNLPDGMAE 252

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285
           E+   A    +A+  R     +F+FD   ++ ++LE+N             +    G + 
Sbjct: 253 ELCAAAIKLARAVNYRSAGTVEFVFDSEDQRFYFLEVNT-----------RLQVEHGVTE 301

Query: 286 R----ELLLWMVEDAS 297
           +    +L+ WMV+ A+
Sbjct: 302 QVWGVDLVSWMVQLAA 317


>gi|150396174|ref|YP_001326641.1| acetyl-CoA carboxylase biotin carboxylase subunit [Sinorhizobium
           medicae WSM419]
 gi|150027689|gb|ABR59806.1| acetyl-CoA carboxylase, biotin carboxylase [Sinorhizobium medicae
           WSM419]
          Length = 447

 Score = 96.7 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 40/219 (18%), Positives = 86/219 (39%), Gaps = 17/219 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---S 110
            +H  +G   E+     ILE   I +         L  DK+ +K+     G+PV P    
Sbjct: 77  AVHPGYGFLSENAKFAEILEAHGITFIGPTAEHIRLMGDKITAKKTAEELGIPVVPGSDG 136

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQL 166
            +     ++    I  P +IK   GG   G+ V + +  +   +  + S        D +
Sbjct: 137 EVKPENALEIARQIGFPVLIKATAGGGGRGMKVARTEAELENAVATARSEAAAAFGNDAV 196

Query: 167 LIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
            +E+++     +   V+GD   +   +        S + ++  +      PA + ++   
Sbjct: 197 YMEKFLGKPRHIEIQVVGDGEGNAIHLGERD---CSLQRRHQKVWEEANSPA-LNVEQRM 252

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + ++   A Q +  RG    +FL+   + + +++E+N 
Sbjct: 253 NIGQICAEAMQKLKYRGAGTVEFLY--ENGEFYFIEMNT 289


>gi|331010019|gb|EGH90075.1| urea amidolyase-like protein [Pseudomonas syringae pv. tabaci ATCC
           11528]
          Length = 761

 Score = 96.7 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 43/256 (16%), Positives = 86/256 (33%), Gaps = 30/256 (11%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       E   I +         +   K  ++ +    GVP+     +
Sbjct: 77  AIHPGYGFLSENAAFAQACEDAGIAFVGPTPEQLRVFGLKHTARALARQHGVPMLEGTEL 136

Query: 114 N---RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQL 166
                  + +   I  P ++K   GG  +G+ V +  + +                   +
Sbjct: 137 LDSVESAIAAARDIGYPVMLKSTAGGGGIGMRVCRSAEELADSFEAVKRLGQNNFSDAGV 196

Query: 167 LIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
            IE+Y+     L   V GD   +V  + V          K             +P  +  
Sbjct: 197 FIEKYIQRARHLEVQVFGDGQGEVLALGVRDCSVQRRNQKVL----EETPAPNLPDGMAD 252

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285
           E+   A    +A+  R     +F+FD   ++ ++LE+N             +    G + 
Sbjct: 253 ELCAAAIKLARAVNYRSAGTVEFVFDSEDQRFYFLEVNT-----------RLQVEHGVTE 301

Query: 286 R----ELLLWMVEDAS 297
           +    +L+ WMV+ A+
Sbjct: 302 QVWGVDLVSWMVQLAA 317


>gi|313192165|emb|CBX19942.1| D alanine-D alanine ligase [Clostridium perfringens]
 gi|313192177|emb|CBX19948.1| D alanine-D alanine ligase [Clostridium perfringens]
          Length = 121

 Score = 96.7 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 31/127 (24%), Positives = 64/127 (50%), Gaps = 6/127 (4%)

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
            GGSS+   +++  +++   +L++    +  +++IE+Y+ G E+TC ++    L V  I 
Sbjct: 1   NGGSSVATTLVESKEAVKDAVLEAL--KYDTEVMIEEYIKGDEITCPIIDGKMLPVLAIK 58

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
            PK  F+    KY    +   +  K+  D++KEV+++A   ++ + C   +R D L    
Sbjct: 59  -PKGKFFDIASKYEDGGADEFI-VKLNEDLHKEVEKMALETYKLLKCDVYARVDMLV--K 114

Query: 254 SRKVFWL 260
               + L
Sbjct: 115 DNIPYVL 121


>gi|323137693|ref|ZP_08072769.1| acetyl-CoA carboxylase, biotin carboxylase [Methylocystis sp. ATCC
           49242]
 gi|322396990|gb|EFX99515.1| acetyl-CoA carboxylase, biotin carboxylase [Methylocystis sp. ATCC
           49242]
          Length = 452

 Score = 96.7 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 83/220 (37%), Gaps = 18/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     ILE   I +         L  DK+ +K      G+P  P    
Sbjct: 77  AVHPGYGFLSENARFAEILEEHNITFIGPKSEHIRLMGDKIEAKATAKKLGIPCVPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
            +   +  +     I  P ++K   GG   G+ V +    + + +     ++ +    D 
Sbjct: 137 PVRSEKEALKVAEKIGFPVLVKAASGGGGRGMKVARDPHDLSIAIATARTEAKAAFGDDT 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+Y++    +   V GD   +   +        S + ++  +      PA +     
Sbjct: 197 VYIEKYLEKPRHIEFQVFGDGKGEAIHLGERD---CSLQRRHQKVFEESPSPA-LNDTQR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +E+  +   A + +   G    +FLF   + + +++E+N 
Sbjct: 253 REMGEVCARAMRELQYAGAGTIEFLF--ENGEFYFIEMNT 290


>gi|322697310|gb|EFY89091.1| methylcrotonoyl-CoA carboxylase alpha chain precursor [Metarhizium
           acridum CQMa 102]
          Length = 673

 Score = 96.7 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 44/246 (17%), Positives = 90/246 (36%), Gaps = 27/246 (10%)

Query: 35  QIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSM 91
            +D D+ + L   H         LH  +G   E+       E   I +      A A   
Sbjct: 86  YLDGDKIIALAKKHG-----IQALHPGYGFLSENSQFAEKCEREGIVFVGPPATAMADMG 140

Query: 92  DKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI------SPPYVIKPLKGGSSLGIIVIK 145
           +K RSK+++++  VP  P    +      Q L+      + P ++K ++GG   G+ ++ 
Sbjct: 141 NKARSKEIMTAANVPCVPGY--HGAEQGEQELLQHAKDITFPVLLKSVRGGGGKGMRIVM 198

Query: 146 KDQSIPLDLLQSSS-----WNHGDQLL-IEQYV-DGIELTCGVMGDASLDVTEIAVPKSD 198
            +      L  + +     +  G +++ +E+Y+     +   V  D   +   +      
Sbjct: 199 TEDEFMAQLKSARAEARASFGEGGEVMLVEKYIVRPRHVEVQVFADKHGNTAALGERDCS 258

Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
                 K             +     +++   A  A  A+G  G    +F+ D  S K +
Sbjct: 259 VQRRHQKVL----EESPAPDLDEATRRDLWDKARKAASAVGYVGAGTVEFILDKDSGKFY 314

Query: 259 WLEINV 264
           ++E+N 
Sbjct: 315 FMEMNT 320


>gi|157383858|gb|ABV49320.1| D-ala-D-ala ligase-like protein [Streptococcus uberis]
          Length = 118

 Score = 96.7 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 32/120 (26%), Positives = 56/120 (46%), Gaps = 4/120 (3%)

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            P  +KP   GSS+GI   +  + +   +  +    +  ++LIEQ V   E+  G++G+ 
Sbjct: 1   FPIFVKPANMGSSVGISKAESIEGLREAIALAL--KYDSRILIEQGVVAREIEVGLLGNT 58

Query: 186 SLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
            +  T     +    FY Y+ KY     +  +PA I   I  +++  A  A +AIG  G+
Sbjct: 59  KVASTLPGEVIKDVAFYDYQAKYIDNKISMAIPATIDEGISSQMRYFAEQAFKAIGACGL 118


>gi|330957833|gb|EGH58093.1| urea amidolyase-like protein [Pseudomonas syringae pv. maculicola
           str. ES4326]
          Length = 817

 Score = 96.7 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 44/256 (17%), Positives = 86/256 (33%), Gaps = 30/256 (11%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       E   I +         +   K  ++ +    GVP+     +
Sbjct: 77  AIHPGYGFLSENAGFAQACEDAGIAFVGPTPEQLRVFGLKHTARALARQHGVPLLEGTEL 136

Query: 114 N---RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQL 166
                  + +   I  P ++K   GG  +G+ V +  + +                   +
Sbjct: 137 LDSLEAAIAAARSIGYPVMLKSTAGGGGIGMRVCRSAEELADSFEAVKRLGQNNFSDAGV 196

Query: 167 LIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
            IE+Y+     L   V GD   DV  + V          K             +P  +  
Sbjct: 197 FIEKYIQRARHLEVQVFGDGQGDVLALGVRDCSVQRRNQKVL----EETPAPNLPDSMAD 252

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285
           E+   A    +A+  R     +F+FD   ++ ++LE+N             +    G + 
Sbjct: 253 ELCAAAIKLARAVNYRSAGTVEFVFDSEDQRFYFLEVNT-----------RLQVEHGVTE 301

Query: 286 R----ELLLWMVEDAS 297
           +    +L+ WMV+ A+
Sbjct: 302 QVWGVDLVSWMVQLAA 317


>gi|297843108|ref|XP_002889435.1| 3-methylcrotonyl-CoA carboxylase 1 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297335277|gb|EFH65694.1| 3-methylcrotonyl-CoA carboxylase 1 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 734

 Score = 96.7 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 87/221 (39%), Gaps = 18/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E      + E   + +      A     DK  SK+++ + GVP+ P    
Sbjct: 113 AIHPGYGFLSESSDFAQLCEDSGLTFIGPPASAIRDMGDKSASKRIMGAAGVPLVPGYHG 172

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP---LDLLQSSSWNHG-DQ 165
           +   +D        I  P +IKP  GG   G+ +++ ++      L   + ++ + G + 
Sbjct: 173 HEQDIDHMKSEAEKIGYPIIIKPTHGGGGKGMRIVQSEKDFADSFLGAQREAAASFGVNT 232

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDI 223
           +L+E+Y+     +   + GD   +V  +           ++          PA  I    
Sbjct: 233 ILLEKYITRPRHIEVQIFGDKHGNVLHLYE-----RDCSVQRRHQKIIEEAPAPNISEKF 287

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              + + A  A +A+G       +F+ D  S + +++E+N 
Sbjct: 288 RANLGQAAVSAARAVGYYNAGTVEFIVDTESDQFYFMEMNT 328


>gi|83414209|dbj|BAE53895.1| D-alanine:D-alanine ligase [Streptococcus mutans]
 gi|83415068|dbj|BAE53793.1| D-alanine:D-alanine ligase [Streptococcus mutans]
          Length = 96

 Score = 96.7 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 31/96 (32%), Positives = 50/96 (52%), Gaps = 2/96 (2%)

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA--VPKSDFYSYELKYSSLNST 212
             + +  +  ++LIEQ VD  E+  G++G+  +  T     V    FY YE KY     T
Sbjct: 1   AIALALKYDSRVLIEQGVDAREIEVGILGNTDVKTTLPGEIVKDVAFYDYEAKYIDNKIT 60

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
             +PA+I   I ++++  A  A + +GC G+SR DF
Sbjct: 61  MAIPAEIDPVIVEKMRDYAATAFRTLGCCGLSRCDF 96


>gi|289622025|emb|CBI51203.1| unnamed protein product [Sordaria macrospora]
          Length = 743

 Score = 96.3 bits (239), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 42/223 (18%), Positives = 86/223 (38%), Gaps = 20/223 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            LH  +G   E+       E   I +      A     DK RSK+++++ GVP  P    
Sbjct: 125 ALHPGYGFLSENPAFAKACEDAGIVFVGPPPKAMHDMGDKARSKEIMNAAGVPCVPGYHG 184

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGD 164
              +++        I  P ++K +KGG   G+ +++        L  + +     +  G 
Sbjct: 185 PEQSVEQLKAKAAEIKYPVLLKSVKGGGGKGMRIVRTADEFEAQLKSARAEARASFGEGG 244

Query: 165 QLL-IEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD 222
           +++ +E+YV     +   V  D   +   +            K    +     PA +  D
Sbjct: 245 EVMLVERYVVRPRHVEVQVFADKHGNCVALGERDCSIQRRHQKILEES-----PAPLLDD 299

Query: 223 IYKE-VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + ++ +   A  A  A+   G    +F+ D  + + +++E+N 
Sbjct: 300 VTRKDLWDKARKAALAVDYVGAGTVEFILDKDTNEFYFMEMNT 342


>gi|322712206|gb|EFZ03779.1| methylcrotonoyl-CoA carboxylase alpha chain [Metarhizium anisopliae
           ARSEF 23]
          Length = 673

 Score = 96.3 bits (239), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 42/244 (17%), Positives = 89/244 (36%), Gaps = 23/244 (9%)

Query: 35  QIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSM 91
            +D D+ + L   H         LH  +G   E+       E   I +      A A   
Sbjct: 86  YLDGDKIIALAKKHG-----IQALHPGYGFLSENSQFAEKCEREGIVFVGPPATAMADMG 140

Query: 92  DKMRSKQVVSSCGVPVCPSILVNR----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147
           +K RSK+++++  VP  P            +     I+ P ++K ++GG   G+ ++  +
Sbjct: 141 NKARSKEIMTAANVPCVPGYHGPEQGEQELLQYAKDITFPVLLKSVRGGGGKGMRIVMTE 200

Query: 148 QS----IPLDLLQSSS-WNHGDQLL-IEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFY 200
                 +     ++ + +  G +++ +E+Y+     +   V  D   +   +        
Sbjct: 201 DEFMTQLKSARAEARASFGEGGEVMLVEKYIVRPRHVEVQVFADKHGNTAALGERDCSVQ 260

Query: 201 SYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260
               K             +     +++   A  A  A+G  G    +F+ D  S K +++
Sbjct: 261 RRHQKVL----EESPAPDLDEATRQDLWDKARKAASAVGYVGAGTVEFILDKDSGKFYFM 316

Query: 261 EINV 264
           E+N 
Sbjct: 317 EMNT 320


>gi|13470483|ref|NP_102052.1| acetyl-CoA carboxylase biotin carboxylase subunit [Mesorhizobium
           loti MAFF303099]
 gi|14021225|dbj|BAB47838.1| biotin carboxylase [Mesorhizobium loti MAFF303099]
          Length = 447

 Score = 96.3 bits (239), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 79/220 (35%), Gaps = 18/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     IL    I +         +  DK+ +K+     G+PV P    
Sbjct: 77  AVHPGYGFLSENAKFADILAAHNITFIGPSGDHIRIMGDKIEAKRTAKRLGIPVVPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
            +   +        I  P +IK   GG   G+ V   +  + + L     ++ +    D 
Sbjct: 137 AVTEEKEAKRIAAEIGYPVIIKASAGGGGRGMKVAHSEADLEVALQTARSEAGAAFGDDA 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+Y+     +   V GD                S + ++  +      PA +  +  
Sbjct: 197 VYIEKYLQKPRHIEVQVFGDGFGRGVHFGERD---CSLQRRHQKVWEEANSPA-LNAEER 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +  +   A   +G  G    +FL+   + + +++E+N 
Sbjct: 253 SRIGGICAKAIADLGYSGAGTIEFLY--ENGEFYFIEMNT 290


>gi|154342794|ref|XP_001567345.1| methylcrotonoyl-coa carboxylase biotinylated subunitprotein-like
           protein [Leishmania braziliensis MHOM/BR/75/M2904]
          Length = 687

 Score = 96.3 bits (239), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 39/224 (17%), Positives = 91/224 (40%), Gaps = 24/224 (10%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      +    I +      A +    K  SK+++   GVPV P    
Sbjct: 88  AIHPGYGFLSENADFADAVTRSGIEFIGPPASAISAMGSKSESKRIMEVAGVPVVPGYYG 147

Query: 114 NRFTM----DSQHLISPPYVIKPLKGGSSLGIIVIKKDQS----IPLDLLQSSSWNHGDQ 165
           +  T     +    +  P +IK + GG   G+ ++++ +     +     +++++   D+
Sbjct: 148 DNQTAGFLAEEADKVGFPILIKAVSGGGGKGMKIVERPEDFAFMLESAKREATNFFKDDR 207

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFY---SYELKYSSLNSTHVLPAK-IP 220
           +++E+YV     + C +  D           +  F+      ++          PA  + 
Sbjct: 208 VILERYVKRSRHIECQIFCDKH--------SRGVFFFERDCSVQRRYQKVLEEAPAPHLS 259

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           ++  + +  +A  A +A+G  G    +F+FD  +   +++E+N 
Sbjct: 260 METRQRIGEVALQAAKAVGYVGAGTVEFIFDTSTGDFYFMEMNT 303


>gi|322505476|emb|CAM42777.2| methylcrotonoyl-coa carboxylase biotinylated subunitprotein-like
           protein [Leishmania braziliensis MHOM/BR/75/M2904]
          Length = 687

 Score = 96.3 bits (239), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 39/224 (17%), Positives = 91/224 (40%), Gaps = 24/224 (10%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      +    I +      A +    K  SK+++   GVPV P    
Sbjct: 88  AIHPGYGFLSENADFADAVTRSGIEFIGPPASAISAMGSKSESKRIMEVAGVPVVPGYYG 147

Query: 114 NRFTM----DSQHLISPPYVIKPLKGGSSLGIIVIKKDQS----IPLDLLQSSSWNHGDQ 165
           +  T     +    +  P +IK + GG   G+ ++++ +     +     +++++   D+
Sbjct: 148 DNQTAGFLAEEADKVGFPILIKAVSGGGGKGMKIVERPEDFAFMLESAKREATNFFKDDR 207

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFY---SYELKYSSLNSTHVLPAK-IP 220
           +++E+YV     + C +  D           +  F+      ++          PA  + 
Sbjct: 208 VILERYVKRSRHIECQIFCDKH--------SRGVFFFERDCSVQRRYQKVLEEAPAPHLS 259

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           ++  + +  +A  A +A+G  G    +F+FD  +   +++E+N 
Sbjct: 260 METRQRIGEVALQAAKAVGYVGAGTVEFIFDTSTGDFYFMEMNT 303


>gi|322494078|emb|CBZ29376.1| methylcrotonoyl-coa carboxylase biotinylated subunitprotein-like
           protein [Leishmania mexicana MHOM/GT/2001/U1103]
          Length = 687

 Score = 96.3 bits (239), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 91/220 (41%), Gaps = 16/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      +    I +      A +L   K  SK+++ + GVPV P    
Sbjct: 88  AIHPGYGFLSENADFADAVTRSGIEFIGPPASAISLMGSKSESKRIMEAAGVPVVPGYYG 147

Query: 114 NR----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS----IPLDLLQSSSWNHGDQ 165
                 F  +  + +  P +IK + GG   G+ ++++ +     +     ++ ++   D+
Sbjct: 148 ENQNVSFLAEEANKVGFPILIKAVSGGGGKGMKIVERLEDFAFMLASAKREAVNFFKDDR 207

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           +++E+YV     + C +  D                S + +Y  +         + +++ 
Sbjct: 208 VILERYVKRPRHIECQIFFDKHGRGVFFFERD---CSVQRRYQKVL-EEAPAPHLSMEMR 263

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +  +A  A +A+G  G    +F+FD  +   +++E+N 
Sbjct: 264 QRIGEVALQAAKAVGYVGAGTVEFIFDTSTGDFYFMEMNT 303


>gi|291400263|ref|XP_002716391.1| PREDICTED: methylcrotonoyl-Coenzyme A carboxylase 1 (alpha)
           [Oryctolagus cuniculus]
          Length = 733

 Score = 96.3 bits (239), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 41/221 (18%), Positives = 83/221 (37%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H  +G   E+     + +   I +      A      K  SK ++++ GVPV      
Sbjct: 124 AIHPGYGFLSENMEFAELCKQEGIIFIGPPSSAIRDMGIKSTSKSIMAAAGVPVVEGYHG 183

Query: 113 ---VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
               ++   +    I  P +IK ++GG   G+ +++  +     L  +          D 
Sbjct: 184 EEQSDQCLREHAARIGYPVMIKAVRGGGGKGMRIVQSAEEFQEQLESARREAKKSFNDDA 243

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           +LIE++VD    +   V GD   +   +           ++          PA  I  ++
Sbjct: 244 VLIEKFVDTPRHVEVQVFGDHHGNAVYL-----FERDCSVQRRHQKIIEEAPAPGIKPEV 298

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            K++   A  A +A+   G    +F+ D      +++E+N 
Sbjct: 299 RKKLGEAAVRAAKAVNYVGAGTVEFIMDSKQN-FYFMEMNT 338


>gi|83858502|ref|ZP_00952024.1| acetyl-CoA carboxylase [Oceanicaulis alexandrii HTCC2633]
 gi|83853325|gb|EAP91177.1| acetyl-CoA carboxylase [Oceanicaulis alexandrii HTCC2633]
          Length = 449

 Score = 96.3 bits (239), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 41/220 (18%), Positives = 80/220 (36%), Gaps = 18/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     I+E   + +         L  DK+ +KQ     G+PV P    
Sbjct: 77  AIHPGYGFLSENARFAEIVEAHGLTFIGPTAETIRLMGDKITAKQAAMDAGIPVVPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
            I            I  P +IK   GG   G+ V + +  +   L     ++ +      
Sbjct: 137 AITDMDEARKVAKAIGFPVLIKAASGGGGRGMKVAESEDKLESALQTASSEAQAAFGDGA 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+Y+     +   V+ D   +V  +            K             +  +  
Sbjct: 197 VYIEKYLGKPRHIEIQVLADQHGNVVHLGERDCSLQRRHQKVL----EEAPSVALDAEAR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            ++ ++   A +AIG RG    +FL+   + + +++E+N 
Sbjct: 253 AKIGKVVTDAVKAIGYRGAGTVEFLY--ENGEFYFIEMNT 290


>gi|296224667|ref|XP_002758150.1| PREDICTED: methylcrotonoyl-CoA carboxylase subunit alpha,
           mitochondrial [Callithrix jacchus]
          Length = 716

 Score = 96.3 bits (239), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 41/221 (18%), Positives = 84/221 (38%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H  +G   E+     + +   I +      A      K  SK ++++ GVP+      
Sbjct: 125 AIHPGYGFLSENMEFAELCKEEGIIFIGPPPSAIRDMGIKSTSKSIMAAAGVPIVEGYHG 184

Query: 113 ---VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
               ++   +    I  P +IK ++GG   G+ +++ +Q     L  +          D 
Sbjct: 185 EDQSDQCLKEHAGRIGYPVMIKAVRGGGGKGMRIVRSEQEFQEQLESARREAKKSFSDDA 244

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           +LIE++VD    +   V GD   +   +           ++          PA  I  ++
Sbjct: 245 VLIEKFVDTPRHVEVQVFGDHHGNAVYL-----FERDCSVQRRHQKIIEEAPAPGIKPEV 299

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            K++   A  A +A+   G    +F+ D      +++E+N 
Sbjct: 300 RKQLGEAAVRAAKAVNYVGAGTVEFIMDSKHN-FYFMEMNT 339


>gi|170743520|ref|YP_001772175.1| acetyl-CoA carboxylase, biotin carboxylase [Methylobacterium sp.
           4-46]
 gi|168197794|gb|ACA19741.1| acetyl-CoA carboxylase, biotin carboxylase [Methylobacterium sp.
           4-46]
          Length = 451

 Score = 96.3 bits (239), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 85/220 (38%), Gaps = 18/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     +L    I +         +  DK+ +K+  +  G+P  P    
Sbjct: 77  AVHPGYGFLSENARFAEVLGHHRIAFIGPKAEHIRVMGDKIEAKRTATRLGIPCVPGSEG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
            +            I  P +IK   GG   G+ V + ++ +   L     ++ +    D 
Sbjct: 137 GVSDPDEARRVAAEIGYPVLIKAASGGGGRGMKVARSEEDLETALATARIEAKAAFGDDA 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+Y++    +   V+GD       +A       S + ++  +      PA +  ++ 
Sbjct: 197 VYIEKYLEKPRHIEVQVLGDGRGGAIHLAERD---CSLQRRHQKVWEEGPSPA-LNPEMR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +++  +   A Q +G  G    +FL+       +++E+N 
Sbjct: 253 EQIGSICARAMQELGYTGAGTIEFLY--EDGAFYFIEMNT 290


>gi|315122826|ref|YP_004063315.1| acetyl-CoA carboxylase biotin carboxylase subunit [Candidatus
           Liberibacter solanacearum CLso-ZC1]
 gi|313496228|gb|ADR52827.1| acetyl-CoA carboxylase biotin carboxylase subunit [Candidatus
           Liberibacter solanacearum CLso-ZC1]
          Length = 446

 Score = 96.3 bits (239), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 40/219 (18%), Positives = 83/219 (37%), Gaps = 19/219 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--SI 111
            +H  +G   E+     ILE   I +         +  DK+ +K+     G+PV P    
Sbjct: 77  AVHPGYGFLSENAKFAEILEAHNIKFIGPSSEHIKIMGDKITAKETAQKLGIPVVPGSGE 136

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS-----SSWNHGDQL 166
           +  R  M     I  P ++K   GG   G+ +   ++++   + Q+     S++   D +
Sbjct: 137 ICVRTAMPIAQKIGFPVLVKASAGGGGRGMRIAHSEKNLIEAINQARSESLSAFG-SDAV 195

Query: 167 LIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
            IE+Y+     +   + GD   +               ++  +        + I      
Sbjct: 196 YIEKYLKKPRHIEIQIFGDGKGNAI-----HFGERDCSVQRRNQKIWEEAHSLISAQDRA 250

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           E+  +   A + I  RG    +FL+   + + +++E+N 
Sbjct: 251 EIGEICVQAMKKIEYRGAGTVEFLY--ENGQFYFIEMNT 287


>gi|255322956|ref|ZP_05364092.1| acetyl-CoA carboxylase, biotin carboxylase [Campylobacter showae
           RM3277]
 gi|255299818|gb|EET79099.1| acetyl-CoA carboxylase, biotin carboxylase [Campylobacter showae
           RM3277]
          Length = 443

 Score = 96.3 bits (239), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 45/224 (20%), Positives = 87/224 (38%), Gaps = 15/224 (6%)

Query: 50  KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109
           + D  F   +G   E+     I    ++ +    + A AL  DK ++KQV+   GVPV P
Sbjct: 75  EADAIFPG-YGFLSENQNFVEICSHHKLKFIGPSVAAMALMSDKSKAKQVMQRAGVPVIP 133

Query: 110 S----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH--- 162
                +   +   +    I  P ++K   GG   G+ V+++++ I      + S      
Sbjct: 134 GSDGAVADTKAAKELAKKIGYPVILKAAAGGGGRGMRVVEREEDIEKAFWSAESEAMSAF 193

Query: 163 -GDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
               + +E+Y+ +   +   ++GD+  +V  I            K             + 
Sbjct: 194 GDGTMYMEKYILNPRHIEVQIIGDSHGNVLHIGERDCSMQRRHQK----LIEESPAILLD 249

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
               + +   A  A +AIG  G    +FL D  +   +++E+N 
Sbjct: 250 EATRERLHETAIKAAKAIGYEGAGTFEFLVDK-NLDFYFIEMNT 292


>gi|56368324|emb|CAF02119.1| D-alanine-D-alanine ligase [Oenococcus oeni]
 gi|56368326|emb|CAF02120.1| D-alanine-D-alanine ligase [Oenococcus oeni]
 gi|56368330|emb|CAF02122.1| D-alanine-D-alanine ligase [Oenococcus oeni]
          Length = 147

 Score = 96.0 bits (238), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 41/145 (28%), Positives = 66/145 (45%), Gaps = 24/145 (16%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVS-QIDVDRSVGLVLAHLKPDLAFNVLHGN 61
           VL G    E E          + L +    +   ID  R++       K D+ F  +HGN
Sbjct: 20  VLFG----EDE------DELLAGLPNKNADIFGPIDSIRNL-------KLDVLFPSVHGN 62

Query: 62  FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV-----NRF 116
            GEDG +  +  L+ IPY  SG+ A A+S DK+ +K++++  G+     I++     N+ 
Sbjct: 63  LGEDGTLAGLFRLMNIPYVGSGLRAHAISFDKVITKELMTVNGIRNTKYIVIFQNDKNKP 122

Query: 117 TMDS-QHLISPPYVIKPLKGGSSLG 140
             DS    +     +K    GSS+G
Sbjct: 123 DWDSVSKQLGEVVFVKAANQGSSVG 147


>gi|118468949|ref|YP_888976.1| acetyl-/propionyl-coenzyme A carboxylase alpha chain [Mycobacterium
           smegmatis str. MC2 155]
 gi|118170236|gb|ABK71132.1| acetyl-/propionyl-coenzyme A carboxylase alpha chain [Mycobacterium
           smegmatis str. MC2 155]
          Length = 669

 Score = 96.0 bits (238), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 82/221 (37%), Gaps = 17/221 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+    + L    I +      A A   DK+ +K  VS+ GVPV P I  
Sbjct: 83  AVHPGYGFLSENAEFASALATAGIVFIGPPASAIATMGDKIAAKAAVSAFGVPVVPGISR 142

Query: 112 --LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
             L +   +     +  P ++KP  GG   G+ V++    +P  L+    ++ +    D 
Sbjct: 143 PGLADDDLIAGAAEVGYPVLVKPSAGGGGKGMRVVEAAADLPAALVSARREAGAAFGDDT 202

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           L +E++V     +   V+ D   +V  +   +        K             +     
Sbjct: 203 LFLERFVQRPRHIEVQVLADGHGNVIHLGERECSLQRRHQK----VIEEAPSPLLDEATR 258

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLS-RKVFWLEINV 264
             +   A    +++   G    +F+       + F++E+N 
Sbjct: 259 ARIGAAACATARSVDYTGAGTVEFIVSADRPDEFFFMEMNT 299


>gi|330937687|gb|EGH41585.1| Urea amidolyase-related protein [Pseudomonas syringae pv. pisi str.
           1704B]
          Length = 791

 Score = 96.0 bits (238), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 44/256 (17%), Positives = 88/256 (34%), Gaps = 30/256 (11%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       E   I +         +   K  ++ +    GVP+     +
Sbjct: 87  AIHPGYGFLSENAGFAQACEDAGIAFVGPTPEQLRVFGLKHTARALARQHGVPMLEGTEL 146

Query: 114 N---RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQL 166
                  + + H I  P ++K   GG  +G+ V +  + +                   +
Sbjct: 147 LDSLESAIAAAHTIGYPVMLKSTAGGGGIGMRVCRSAEELADSFEAVKRLGQNNFSDAGV 206

Query: 167 LIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
            IE+Y+     L   V GD   +V  + V          K             +P  + +
Sbjct: 207 FIEKYIQRARHLEVQVFGDGQGEVLALGVRDCSVQRRNQKVL----EETPAPNLPHGMAE 262

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285
           E+   A    +A+  R     +F+FD   ++ ++LE+N             +    G + 
Sbjct: 263 ELCIAAVKLARAVNYRSAGTVEFVFDSEDQRFYFLEVNT-----------RLQVEHGVTE 311

Query: 286 R----ELLLWMVEDAS 297
           +    +L+ WMV+ A+
Sbjct: 312 QVWGVDLVSWMVQLAA 327


>gi|257486535|ref|ZP_05640576.1| hypothetical protein PsyrptA_24895 [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 355

 Score = 96.0 bits (238), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 37/219 (16%), Positives = 73/219 (33%), Gaps = 15/219 (6%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       E   I +         +   K  ++ +    GVP+     +
Sbjct: 77  AIHPGYGFLSENAAFAQACEDAGIAFVGPTPEQLRVFGLKHTARALARQHGVPMLEGTEL 136

Query: 114 N---RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQL 166
                  + +   I  P ++K   GG  +G+ V +  + +                   +
Sbjct: 137 LDSVESAIAAARDIGYPVMLKSTAGGGGIGMRVCRSAEELADSFEAVKRLGQNNFSDAGV 196

Query: 167 LIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
            IE+Y+     L   V GD   +V  + V          K             +P  +  
Sbjct: 197 FIEKYIQRARHLEVQVFGDGQGEVLALGVRDCSVQRRNQKVL----EETPAPNLPDGMAD 252

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           E+   A    +A+  R     +F+FD   ++ ++LE+N 
Sbjct: 253 ELCAAAIKLARAVNYRSAGTVEFVFDSEDQRFYFLEVNT 291


>gi|56368332|emb|CAF02123.1| D-alanine-D-alanine ligase [Oenococcus oeni]
          Length = 147

 Score = 96.0 bits (238), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 41/145 (28%), Positives = 66/145 (45%), Gaps = 24/145 (16%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVS-QIDVDRSVGLVLAHLKPDLAFNVLHGN 61
           VL G    E E          + L +    +   ID  R++       K D+ F  +HGN
Sbjct: 20  VLFG----EDE------DELLAGLPNKNADIFGPIDSIRNL-------KLDVLFPSVHGN 62

Query: 62  FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV-----NRF 116
            GEDG +  +  L+ IPY  SG+ A A+S DK+ +K++++  G+     I++     N+ 
Sbjct: 63  LGEDGTLAGLFRLMNIPYVGSGLRAHAISFDKVITKELMTVNGIRNTKYIVIFQNDKNKP 122

Query: 117 TMDS-QHLISPPYVIKPLKGGSSLG 140
             DS    +     +K    GSS+G
Sbjct: 123 DWDSVSKQLGEVVFVKAANQGSSVG 147


>gi|307322696|ref|ZP_07602022.1| ATP-dependent carboxylate-amine ligase domain protein ATP-grasp
           [Sinorhizobium meliloti AK83]
 gi|306891653|gb|EFN22513.1| ATP-dependent carboxylate-amine ligase domain protein ATP-grasp
           [Sinorhizobium meliloti AK83]
          Length = 442

 Score = 96.0 bits (238), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 54/262 (20%), Positives = 94/262 (35%), Gaps = 33/262 (12%)

Query: 26  LEDAGFKVSQIDVD-----RSVGLVLAHLKPDLAFNVLHGNFGEDG----LVQAILELLE 76
           L   G +  Q+D +     +SV   L  L  D+A   L G  G D      V  +     
Sbjct: 43  LAAEGVEAVQVDTNDLDAMKSVYSRLK-LTHDIA--GLTGFSGLDESVYVTVGKLCRHFG 99

Query: 77  IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL--ISPPYVIKPLK 134
           +P       +     DK   +Q++   GVP+    +    T     +  I  P VIKP+ 
Sbjct: 100 LP--GPDPASIKQCHDKFIQRQLLEHAGVPIPDYRVATNATEVESAVAEIGLPVVIKPVV 157

Query: 135 GGSSLGIIVIKKDQSIPLD----LLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190
           G  S G+ + +    +       L  +  W    ++L+E++  G   T  +MG   + + 
Sbjct: 158 GSGSSGVQMCRTVDEVAEHTRHLLGGTHMWQSSPRILVEEFAQGQYFTVDMMGGRVVGIG 217

Query: 191 EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR-GISRSDFL 249
                    + Y          +  PA +  D    +   +    +A+G   G +  +F 
Sbjct: 218 AGDFGPPPHFVYR--------EYSYPALLSNDESARIADDSLSCLRALGLGWGPANIEFR 269

Query: 250 FDPLSRKVFWLEINV-QPGMTP 270
           +         +E+N   PG TP
Sbjct: 270 WTKRG--PVVIEVNPRLPG-TP 288


>gi|289649916|ref|ZP_06481259.1| hypothetical protein Psyrpa2_19529 [Pseudomonas syringae pv.
           aesculi str. 2250]
          Length = 365

 Score = 96.0 bits (238), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 37/219 (16%), Positives = 74/219 (33%), Gaps = 15/219 (6%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       E   I +         +   K  ++ +    GVP+     +
Sbjct: 77  AIHPGYGFLSENTAFAQACEDAGIAFVGPTPEQLRVFGLKHTARALARQHGVPMLEGTEL 136

Query: 114 N---RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQL 166
                  + +   I  P ++K   GG  +G+ V +  + +                   +
Sbjct: 137 LDSVESAIAAARDIGYPVMLKSTAGGGGIGMRVCRSAEELADSFEAVKRLGQNNFSDAGV 196

Query: 167 LIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
            IE+Y+     L   V GD   +V  + V          K             +P  + +
Sbjct: 197 FIEKYIQRARHLEVQVFGDGQGEVLALGVRDCSVQRRNQKVL----EETPAPNLPDGMAE 252

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           E+   A    +A+  R     +F+FD   ++ ++LE+N 
Sbjct: 253 ELCAAAIKLARAVNYRSAGTVEFVFDSEDQRFYFLEVNT 291


>gi|15888655|ref|NP_354336.1| acetyl-CoA carboxylase biotin carboxylase subunit [Agrobacterium
           tumefaciens str. C58]
 gi|15156385|gb|AAK87121.1| acetyl-CoA carboxylase, biotin carboxylase [Agrobacterium
           tumefaciens str. C58]
          Length = 448

 Score = 96.0 bits (238), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 40/219 (18%), Positives = 85/219 (38%), Gaps = 17/219 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---S 110
            +H  +G   E+     IL+   I +         +  DK+ +KQ     G+PV P    
Sbjct: 77  AVHPGYGFLSENAKFADILDAHGITFIGPTAEHIRIMGDKITAKQTAQELGIPVVPGSDG 136

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQL 166
            +     ++    I  P +IK   GG   G+ V K +  +   +  + S        D +
Sbjct: 137 EVKPENALEIARTIGFPVLIKATAGGGGRGMKVAKTEADLEDAVATARSEAAAAFGNDAV 196

Query: 167 LIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
            +E+Y+     +   V GD   +   +        S + ++  +      PA + ++   
Sbjct: 197 YMEKYLGKPRHIEVQVFGDGEGNAVHLGERD---CSLQRRHQKVLEEANSPA-LTVEQRM 252

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           ++  +   A + +  RG    +FL+   + + +++E+N 
Sbjct: 253 KIGEICADAMRKLKYRGAGTIEFLY--ENGEFYFIEMNT 289


>gi|56368340|emb|CAF02127.1| D-alanine-D-alanine ligase [Oenococcus oeni]
          Length = 147

 Score = 96.0 bits (238), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 41/145 (28%), Positives = 66/145 (45%), Gaps = 24/145 (16%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVS-QIDVDRSVGLVLAHLKPDLAFNVLHGN 61
           VL G    E E          + L +    +   ID  R++       K D+ F  +HGN
Sbjct: 20  VLFG----EDE------DELLAGLPNKNADIFGPIDSIRNL-------KLDVLFPSVHGN 62

Query: 62  FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV-----NRF 116
            GEDG +  +  L+ IPY  SG+ A A+S DK+ +K++++  G+     I++     N+ 
Sbjct: 63  LGEDGTLAGLFRLMNIPYVGSGLRAHAISFDKVITKELMTVNGIRNTKYIVIFPNDKNKP 122

Query: 117 TMDS-QHLISPPYVIKPLKGGSSLG 140
             DS    +     +K    GSS+G
Sbjct: 123 DWDSVSKPLGEVVFVKAANQGSSVG 147


>gi|90020774|ref|YP_526601.1| putative allophanate hydrolase [Saccharophagus degradans 2-40]
 gi|89950374|gb|ABD80389.1| Allophanate hydrolase subunit 2 [Saccharophagus degradans 2-40]
          Length = 1209

 Score = 96.0 bits (238), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 39/257 (15%), Positives = 90/257 (35%), Gaps = 32/257 (12%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+     + E   + +         L   K  +++      VP+ P   +
Sbjct: 77  AVHPGYGFLSENTEFVGLCEQAGLTFIGPTTEQMRLFGLKHVAREAAEQADVPLVPGSPL 136

Query: 114 NRFTMDS---QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQL 166
                ++      +  P ++K   GG  +G+ V   +  +          S+++   D +
Sbjct: 137 LSELAEALVWAKEVGYPIMLKSTAGGGGIGMQVCHSESQLQQAWDSVKRLSANYFSNDGV 196

Query: 167 LIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIY 224
            +E+Y+ D   +   + GD +                  +  +       PA K+   + 
Sbjct: 197 FLEKYIADARHIEVQIFGDGAGTAVAFGE-----RDCSAQRRNQKVIEETPAPKLSEAVR 251

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
            ++   A     ++  R     +F+FD    K ++LE+N             +    G +
Sbjct: 252 ADLCATAQRLMASVNYRNAGTVEFIFDAKENKFYFLEVNT-----------RLQVEHGVT 300

Query: 285 FR----ELLLWMVEDAS 297
            +    +L+ WM++ A+
Sbjct: 301 EQVWGVDLVEWMIKQAA 317


>gi|46128621|ref|XP_388864.1| hypothetical protein FG08688.1 [Gibberella zeae PH-1]
          Length = 714

 Score = 96.0 bits (238), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 39/222 (17%), Positives = 83/222 (37%), Gaps = 18/222 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            LH  +G   E+       E   I +      A A    K RSK+++++  VP  P    
Sbjct: 117 ALHPGYGFLSENSKFAERCEEEGIVFVGPPATAMADMGHKARSKEIMTAANVPCVPGYHG 176

Query: 114 ----NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGD 164
                +  ++    I+ P ++K ++GG   G+ ++  ++     L  + +     +  G 
Sbjct: 177 ADQGEQELLEHAKKITFPVLLKSVRGGGGKGMRIVLTEEEFLTQLRSARAEAKASFGEGG 236

Query: 165 QLL-IEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD 222
           +++ +E+Y+     +   V  D   +   +            K             + L 
Sbjct: 237 EVMLVEKYIIRPRHVEVQVFADKWGNTVALGERDCSIQRRHQKIL----EESPAPDLDLA 292

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              ++   A  A  A+G  G    +F+ D  + K +++E+N 
Sbjct: 293 TRHDLWDKARKAASAVGYVGAGTVEFILDKDTNKFYFMEMNT 334


>gi|257460269|ref|ZP_05625372.1| acetyl-CoA carboxylase, biotin carboxylase [Campylobacter gracilis
           RM3268]
 gi|257442334|gb|EEV17474.1| acetyl-CoA carboxylase, biotin carboxylase [Campylobacter gracilis
           RM3268]
          Length = 445

 Score = 96.0 bits (238), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 48/224 (21%), Positives = 81/224 (36%), Gaps = 14/224 (6%)

Query: 50  KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109
           + D  F   +G   E      I     I +    + A  L  DK ++KQV+   G+PV P
Sbjct: 76  EADAIFPG-YGFLSESQNFVEICAKHGIKFIGPSVEAMTLMSDKSKAKQVMMRAGIPVVP 134

Query: 110 S----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL----DLLQSSSWN 161
                I            I  P +IK   GG   G+ V+++++ I         ++ S  
Sbjct: 135 GSDGAIASVEEARKLAAEIGYPVIIKAAAGGGGRGMRVVEREEDIEKLFWSAESEAMSAF 194

Query: 162 HGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
               + +E+Y+     +   V+GD    V  I            K             + 
Sbjct: 195 GDGTMYMEKYITNPRHIEVQVLGDEHGHVVHIGERDCSMQRRHQK----LIEESPAVILD 250

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
               K +   A  A +AIG       +FL+D   +K +++E+N 
Sbjct: 251 EPTRKSLHETAVRAAKAIGYASAGTFEFLYDGKDKKFYFIEMNT 294


>gi|86357495|ref|YP_469387.1| acetyl-CoA carboxylase biotin carboxylase subunit [Rhizobium etli
           CFN 42]
 gi|86281597|gb|ABC90660.1| acetyl-CoA carboxylase, biotin carboxylase protein [Rhizobium etli
           CFN 42]
          Length = 449

 Score = 96.0 bits (238), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 86/220 (39%), Gaps = 18/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     ILE   I +         +  DK+ +K      G+PV P    
Sbjct: 77  AVHPGYGFLSENAKFADILEAHGITFIGPTADHIRIMGDKITAKTTALELGIPVVPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
            +      + +   I  P +IK   GG   G+ V K +  +         ++++    D 
Sbjct: 137 EVKTEEDALRTAAEIGYPVLIKATAGGGGRGMKVAKSEADLIEAWSTARTEAAAAFGNDA 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+Y+     +   V GD   +   +        S + ++  +      PA + ++  
Sbjct: 197 VYMEKYLGKPRHIEIQVFGDGEGNAIHLGERD---CSLQRRHQKVWEEANSPA-LNVEQR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            ++ ++   A + +  RG    +FL+   + + +++E+N 
Sbjct: 253 MKIGQICADAMKKLKYRGAGTIEFLY--ENGEFYFIEMNT 290


>gi|289423606|ref|ZP_06425406.1| acetyl-CoA carboxylase, biotin carboxylase subunit
           [Peptostreptococcus anaerobius 653-L]
 gi|289155974|gb|EFD04639.1| acetyl-CoA carboxylase, biotin carboxylase subunit
           [Peptostreptococcus anaerobius 653-L]
          Length = 449

 Score = 96.0 bits (238), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 41/221 (18%), Positives = 84/221 (38%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--I 111
            +H  FG   E+     + E+ EI +        +L  DK  +K+++   G+PV      
Sbjct: 80  AIHPGFGFLSENSSFAKLCEIYEIKFIGPSSRLISLMGDKEEAKRLMKEAGLPVVEGSET 139

Query: 112 LVNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
           +V    +       I  P +IK   GG   G+ ++++ Q +    + +           +
Sbjct: 140 VVENIELAKIICEQIGYPIIIKARSGGGGKGMRLVREGQDLESAFMSARKEAENAFGDKE 199

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDI 223
           + IE+Y+ D   +   ++ D   +V              ++ +        PA  I  + 
Sbjct: 200 VYIEKYIDDPRHIEVQILADEHGNVV-----HLGSRDCSIQMNHQKIIEEAPATSIRDET 254

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              +  +A  A + +G       +FL D    K +++E+N 
Sbjct: 255 MNYLYDMATRAAKYVGYTNAGTIEFLVDK-DGKAYFMEMNT 294


>gi|239917214|ref|YP_002956772.1| acetyl/propionyl-CoA carboxylase, alpha subunit [Micrococcus luteus
           NCTC 2665]
 gi|281414312|ref|ZP_06246054.1| acetyl/propionyl-CoA carboxylase, alpha subunit [Micrococcus luteus
           NCTC 2665]
 gi|239838421|gb|ACS30218.1| acetyl/propionyl-CoA carboxylase, alpha subunit [Micrococcus luteus
           NCTC 2665]
          Length = 709

 Score = 95.6 bits (237), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 48/227 (21%), Positives = 88/227 (38%), Gaps = 24/227 (10%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+  +   LE   I +    + +     DK+R+K+ V++  VPV P I  
Sbjct: 87  AVHPGYGFLSENADIARALEAAGIVFVGPPVGSLDAMADKIRAKETVAAYDVPVVPGIQD 146

Query: 112 --LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
             L +         +  P +IKP  GG   G++ ++  + +P  L  +          D 
Sbjct: 147 PTLTDAQITAEAERVGFPLLIKPSAGGGGKGMVAVRAAEELPGALASARRTARSAFGDDT 206

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI----- 219
           LL+E+ +     +   V  DA      +   +        K          PA +     
Sbjct: 207 LLLERLITAPRHVEVQVFADAHGATVHLGERECSLQRRHQK-----VIEEAPAPLLTGLA 261

Query: 220 -PLDIYKEVQRLAFLAHQAIGCRGISRSDFLF-DPLSRKVFWLEINV 264
              ++ + + R A  A  ++G RG    +FL  D    + F++E+N 
Sbjct: 262 HGAELRERLGRAAVDAAVSVGYRGAGTVEFLVSDENPDEFFFMEMNT 308


>gi|116251848|ref|YP_767686.1| acetyl-CoA carboxylase biotin carboxylase subunit [Rhizobium
           leguminosarum bv. viciae 3841]
 gi|115256496|emb|CAK07580.1| putative biotin carboxylase [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 451

 Score = 95.6 bits (237), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 86/220 (39%), Gaps = 18/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     ILE   I +         +  DK+ +K      G+PV P    
Sbjct: 79  AVHPGYGFLSENAKFADILEAHGITFIGPTADHIRIMGDKITAKTTALELGIPVVPGSDG 138

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
            +      + +   I  P +IK   GG   G+ V K +  +         ++++    D 
Sbjct: 139 EVKTEEDALKTAAEIGYPVLIKATAGGGGRGMKVAKSEADLIEAWSTARTEAAAAFGNDA 198

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+Y+     +   V GD   +   +        S + ++  +      PA + ++  
Sbjct: 199 VYMEKYLGKPRHIEIQVFGDGEGNAIHLGERD---CSLQRRHQKVWEEANSPA-LNVEQR 254

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            ++ ++   A + +  RG    +FL+   + + +++E+N 
Sbjct: 255 MKIGQVCADAMKKLKYRGAGTIEFLY--ENGEFYFIEMNT 292


>gi|256380220|ref|YP_003103880.1| carbamoyl-phosphate synthase L chain ATP- binding [Actinosynnema
           mirum DSM 43827]
 gi|255924523|gb|ACU40034.1| Carbamoyl-phosphate synthase L chain ATP- binding [Actinosynnema
           mirum DSM 43827]
          Length = 643

 Score = 95.6 bits (237), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 44/220 (20%), Positives = 85/220 (38%), Gaps = 16/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+           + +    + A  +  DK+++K   ++ GVPV P    
Sbjct: 79  AVHPGYGFLAENAGFARACAEAGLVFIGPPVRAIEVMGDKIQAKLTAAAAGVPVVPGRAE 138

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
                D    +   I  P ++KP  GG   G+ ++++   +   +  +          D 
Sbjct: 139 PGMGDDELVAAATEIGFPVLVKPSAGGGGKGMRLVREAAGLREAVESARREARASFGDDA 198

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           LL+E+YV D   +   V+ DA      +   +        K             +  D  
Sbjct: 199 LLVERYVSDPRHIEIQVLADAHGTTVHLGERECSLQRRHQK----VIEEAPSPLLDADAR 254

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + + R A LA +++G  G    +F+ D  + + F+LE+N 
Sbjct: 255 EAMGRSAVLAAESVGYVGAGTVEFIVDGTTGEHFFLEMNT 294


>gi|302775644|ref|XP_002971239.1| hypothetical protein SELMODRAFT_411783 [Selaginella moellendorffii]
 gi|300161221|gb|EFJ27837.1| hypothetical protein SELMODRAFT_411783 [Selaginella moellendorffii]
          Length = 557

 Score = 95.6 bits (237), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 80/221 (36%), Gaps = 29/221 (13%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+           I +      A +L  DK  SK+++S   VPV P    
Sbjct: 112 AIHPGYGFLSENSKFAQACHESGITFIGPSAAAISLMGDKSASKKLMSGANVPVVPGYHG 171

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQS----IPLDLLQSSSWNHGDQ 165
           +  + +        I  P +IKP+ GG   G+ ++         +   L +S++     +
Sbjct: 172 DDQSHELLQSEADRIGYPVLIKPVLGGGGKGMRIVHSRDEFLDSLRSALRESAAAFGDTR 231

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDI 223
           +LIE+Y+     +   + GD   +V              ++          PA +   D 
Sbjct: 232 VLIEKYIAQPRHIEVQIFGDRFGNVV-----HLFERDCSVQRRHQKIIEEAPAPLMSDDF 286

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              + + A  A +           F+ D  +   F++E+N 
Sbjct: 287 RNSIGQAAVNAAK-----------FIVDTATGDFFFMEMNT 316


>gi|209549135|ref|YP_002281052.1| acetyl-CoA carboxylase biotin carboxylase subunit [Rhizobium
           leguminosarum bv. trifolii WSM2304]
 gi|209534891|gb|ACI54826.1| acetyl-CoA carboxylase, biotin carboxylase [Rhizobium leguminosarum
           bv. trifolii WSM2304]
          Length = 449

 Score = 95.6 bits (237), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 86/220 (39%), Gaps = 18/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     ILE   I +         +  DK+ +K      G+PV P    
Sbjct: 77  AVHPGYGFLSENAKFADILEAHGITFIGPTADHIRIMGDKITAKTTALELGIPVVPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
            +      + +   I  P +IK   GG   G+ V K +  +         ++++    D 
Sbjct: 137 EVKTEEDALKTAAEIGYPVLIKATAGGGGRGMKVAKSEADLIEAWSTARTEAAAAFGNDA 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+Y+     +   V GD   +   +        S + ++  +      PA + ++  
Sbjct: 197 VYMEKYLGKPRHIEIQVFGDGEGNAIHLGERD---CSLQRRHQKVWEEANSPA-LNVEQR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            ++ ++   A + +  RG    +FL+   + + +++E+N 
Sbjct: 253 MKIGQVCADAMKKLKYRGAGTIEFLY--ENGEFYFIEMNT 290


>gi|66047204|ref|YP_237045.1| Urea amidolyase-related protein [Pseudomonas syringae pv. syringae
           B728a]
 gi|63257911|gb|AAY39007.1| Urea amidolyase-related protein [Pseudomonas syringae pv. syringae
           B728a]
          Length = 1488

 Score = 95.6 bits (237), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 43/256 (16%), Positives = 86/256 (33%), Gaps = 30/256 (11%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       E   I +         +   K  ++ +    GVP+     +
Sbjct: 77  AIHPGYGFLSENAAFAQACEDAGIAFVGPTPEQLRVFGLKHTARALAKQHGVPMLEGTEL 136

Query: 114 N---RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQL 166
                  + +   I  P ++K   GG  +G+ V +    +                   +
Sbjct: 137 LDSLESAIAAARTIGYPVMLKSTAGGGGIGMRVCRSAGELADSFEAVKRLGQNNFSDAGV 196

Query: 167 LIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
            IE+Y+     L   V GD   +V  + V          K             +P  + +
Sbjct: 197 FIEKYIQRARHLEVQVFGDGQGEVLALGVRDCSVQRRNQKVL----EETPAPNLPHGMAE 252

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285
           E+   A    +A+  R     +F+FD   ++ ++LE+N             +    G + 
Sbjct: 253 ELCAAAVKLARAVNYRSAGTVEFVFDSEDQRFYFLEVNT-----------RLQVEHGVTE 301

Query: 286 R----ELLLWMVEDAS 297
           +    +L+ WMV+ A+
Sbjct: 302 QVWGVDLVSWMVQLAA 317


>gi|330973005|gb|EGH73071.1| Urea amidolyase-related protein [Pseudomonas syringae pv. aceris
           str. M302273PT]
          Length = 762

 Score = 95.6 bits (237), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 43/256 (16%), Positives = 87/256 (33%), Gaps = 30/256 (11%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       E   I +         +   K  ++ +    GVP+     +
Sbjct: 77  AIHPGYGFLSENAAFAQACEDAGIAFVGPTPEQLRVFGLKHTARALAKQHGVPMLEGTEL 136

Query: 114 N---RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQL 166
                  + +   I  P ++K   GG  +G+ V +  + +                   +
Sbjct: 137 LDSLESAIAAARTIGYPVMLKSTAGGGGIGMRVCRSAEELADSFEAVKRLGQNNFSDAGV 196

Query: 167 LIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
            IE+Y+     L   V GD   +V  + V          K             +P  + +
Sbjct: 197 FIEKYIQRARHLEVQVFGDGQGEVLALGVRDCSVQRRNQKVL----EETPAPNLPYGMAE 252

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285
           E+   A    +A+  R     +F+FD   ++ ++LE+N             +    G + 
Sbjct: 253 ELCAAAVKLARAVNYRSAGTVEFVFDSEDQRFYFLEVNT-----------RLQVEHGVTE 301

Query: 286 R----ELLLWMVEDAS 297
           +    +L+ WMV+ A+
Sbjct: 302 QVWGVDLVSWMVQLAA 317


>gi|328542689|ref|YP_004302798.1| methylcrotonoyl-Coenzyme A carboxylase 1 (alpha) [polymorphum
           gilvum SL003B-26A1]
 gi|326412435|gb|ADZ69498.1| putative Methylcrotonoyl-Coenzyme A carboxylase 1 (alpha)
           [Polymorphum gilvum SL003B-26A1]
          Length = 664

 Score = 95.6 bits (237), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 41/220 (18%), Positives = 83/220 (37%), Gaps = 18/220 (8%)

Query: 58  LHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
           +H  +G   E+       E   I +      A A    K+ +K++    GVP  P    +
Sbjct: 87  IHPGYGFLSENAAFARRCEEAGIVFIGPTPDAVAAMGSKIEAKRIAVEAGVPTVPGYHGD 146

Query: 115 RFT----MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQL 166
                        I  P +IK   GG   G+ ++++ Q     L  + +        D +
Sbjct: 147 DQDPVRLAAEAERIGYPVLIKASAGGGGRGMRLVERPQDFAAALETARTEARSAFGDDSV 206

Query: 167 LIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIY 224
           L+E+Y+ +   L   ++GD+  ++              ++ ++       PA  +P  + 
Sbjct: 207 LLERYIANPRHLEVQLVGDSHGNLV-----HLFERDCSVQRNNQKVLEEAPAPNLPGAVR 261

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +   A    +AIG R     +F+ +    + ++LE+N 
Sbjct: 262 ARLHDTALKLGRAIGYRSAGTVEFIMEAGGSEPYFLEMNT 301


>gi|297181499|gb|ADI17686.1| biotin carboxylase [uncultured gamma proteobacterium HF0130_23I23]
          Length = 446

 Score = 95.6 bits (237), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 44/217 (20%), Positives = 82/217 (37%), Gaps = 19/217 (8%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVN 114
           +G   E+             +         +  DK+++K++VSS G+P+ P     I  N
Sbjct: 84  YGFLAENAAFAEKCNESGFKFIGPDPKVIEIMGDKIKAKELVSSLGIPIVPGYSGDIQSN 143

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI-----PLDLLQSSSWNHGDQLLIE 169
                    I  P ++K   GG   G+ ++  +  +             ++   D++ IE
Sbjct: 144 EQIRSIVKEIGYPVIVKATSGGGGKGMRIVNSEDELWDSIVSAQNEAKLAFG-DDKVFIE 202

Query: 170 QYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEV 227
           +Y+     +   V GD       +    S   S + KY         PA  IP +   E+
Sbjct: 203 KYLSKPRHIEIQVFGDGKGKAVHLY---SRDCSLQRKYQ--KILEEAPALNIPKEKLDEI 257

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           Q +   A + I   G    +FL+   + + F++E+N 
Sbjct: 258 QNICVRACKEINYEGAGTLEFLY--ENGQFFFIEMNT 292


>gi|110634068|ref|YP_674276.1| acetyl-CoA carboxylase biotin carboxylase subunit [Mesorhizobium
           sp. BNC1]
 gi|110285052|gb|ABG63111.1| acetyl-CoA carboxylase carboxyltransferase subunit alpha
           [Chelativorans sp. BNC1]
          Length = 447

 Score = 95.6 bits (237), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 84/220 (38%), Gaps = 18/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     IL    + +            DK+ +K+     G+PV P    
Sbjct: 77  AVHPGYGFLSENAKFAEILAAHNVTFIGPSAEHIRTMGDKIEAKRTAKRLGIPVVPGSEG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
            +   R        +  P +IK   GG   G+ V + +  +   L     ++ +    D 
Sbjct: 137 AVRDEREAKRIAAEVGYPVLIKASAGGGGRGMKVARNEAGLAEALATARTEAGAAFGDDA 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+Y++    +   V+GD + +   +        S + ++  +      PA + ++  
Sbjct: 197 VYIEKYLEKPRHIEVQVVGDGAHNAVHLGERD---CSLQRRHQKVWEEANSPA-LNVEQR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            ++      A   +G  G    +FL+   + + +++E+N 
Sbjct: 253 MKIGETVANAMAELGYSGAGTIEFLY--ENGEFYFIEMNT 290


>gi|124010164|ref|ZP_01694822.1| methylcrotonoyl-CoA carboxylase alpha chain [Microscilla marina
           ATCC 23134]
 gi|123983812|gb|EAY24229.1| methylcrotonoyl-CoA carboxylase alpha chain [Microscilla marina
           ATCC 23134]
          Length = 664

 Score = 95.6 bits (237), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 41/235 (17%), Positives = 88/235 (37%), Gaps = 14/235 (5%)

Query: 39  DRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQ 98
              +  V A  + D      +G   E+       +   + +      A      K  +K 
Sbjct: 63  QEKLLAVCAQHQVDAVHPG-YGFLSENAEFARKCQAAGVIFIGPRAEAIEAMGSKSNAKT 121

Query: 99  VVSSCGVPVCPSILVNRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154
           ++    VPV P       + +    + H I  P ++K   GG   G+ ++   + +   +
Sbjct: 122 IMKQNEVPVIPGYQGADQSTETLSQAAHDIGFPVLLKATAGGGGKGMRIVHTAKELNGAI 181

Query: 155 LQSSSWNHG----DQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209
             +          D+L+IE+Y+  G  +   ++GD    V  I   +      + +Y  +
Sbjct: 182 DAAKREAQNAFGNDELIIEKYIASGRHIEFQILGDQHGKVVHILERECTI---QRRYQKV 238

Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
                    +  ++ +++   A  A QA+        +F+FD  S++ ++LE+N 
Sbjct: 239 -IEESPSPVLTPELRQKMGEAALKAAQALNYDNAGTVEFIFDDQSQQFYFLEVNT 292


>gi|320325541|gb|EFW81603.1| hypothetical protein PsgB076_05920 [Pseudomonas syringae pv.
           glycinea str. B076]
          Length = 1302

 Score = 95.6 bits (237), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 43/256 (16%), Positives = 86/256 (33%), Gaps = 30/256 (11%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       E   I +         +   K  ++ +    GVP+     +
Sbjct: 77  AIHPGYGFLSENAAFAQACEDAGIAFVGPTPEQLRVFGLKHTARALARQHGVPMLEGTEM 136

Query: 114 N---RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQL 166
                  + +   I  P ++K   GG  +G+ V +  + +                   +
Sbjct: 137 LDSVESAIAAARDIGYPVMLKSTAGGGGIGMRVCRSAEELADSFEAVKRLGQNNFSDAGV 196

Query: 167 LIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
            IE+Y+     L   V GD   +V  + V          K             +P  +  
Sbjct: 197 FIEKYIQRARHLEVQVFGDGQGEVLALGVRDCSVQRRNQKVL----EETPAPNLPDGMAD 252

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285
           E+   A    +A+  R     +F+FD   ++ ++LE+N             +    G + 
Sbjct: 253 ELCAAAIKLARAVNYRSAGTLEFVFDSEDQRFYFLEVNT-----------RLQVEHGVTE 301

Query: 286 R----ELLLWMVEDAS 297
           +    +L+ WMV+ A+
Sbjct: 302 QVWGVDLVSWMVQLAA 317


>gi|289423730|ref|ZP_06425526.1| pyruvate carboxylase [Peptostreptococcus anaerobius 653-L]
 gi|289155857|gb|EFD04526.1| pyruvate carboxylase [Peptostreptococcus anaerobius 653-L]
          Length = 1147

 Score = 95.6 bits (237), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 42/243 (17%), Positives = 94/243 (38%), Gaps = 24/243 (9%)

Query: 35  QIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSM 91
            +D+D  +  +    K D     +H  +G   E+       E   I +            
Sbjct: 64  YLDID-GIISLAKRKKVD----AIHPGYGFLSENAEFARKCEENGITFIGPDSSIMEQLG 118

Query: 92  DKMRSKQVVSSCGVPVCPSILVN----RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147
           DK+ SK V  +  VP  P +       +   +    I  P ++K   GG   G+ +++++
Sbjct: 119 DKINSKIVAHAANVPTIPGVEKALKTIKEAKEVAAEIGYPVMVKASNGGGGRGMRIVRRE 178

Query: 148 QSIPLDLLQSSSWNHG----DQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSY 202
           + + ++   + S +      D + IE+Y+ D   +   ++GDA  ++  +          
Sbjct: 179 EDLEIEFENARSESRKAFGEDIIFIEKYIEDPKHIEVQILGDAYGNIVHLYE-----RDC 233

Query: 203 ELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
            ++          PA  +P +I +++ + A    + +  +     +FL D      +++E
Sbjct: 234 SVQRRHQKIIEHAPAFSLPTEIREKICQDAVRIAKHVNYKSAGTLEFLVDKHGNH-YFIE 292

Query: 262 INV 264
           +N 
Sbjct: 293 MNT 295


>gi|56368336|emb|CAF02125.1| D-alanine-D-alanine ligase [Oenococcus oeni]
          Length = 147

 Score = 95.6 bits (237), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 33/101 (32%), Positives = 55/101 (54%), Gaps = 6/101 (5%)

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV 105
           + +LK D+ F  +HGN GEDG +  +  L+ IPY  SG+ A A+S DK+ +K++++  G+
Sbjct: 47  IRNLKLDVLFPSVHGNLGEDGTLAGLFRLMNIPYVGSGLRAHAISFDKVITKELMTVNGI 106

Query: 106 PVCPSILV-----NRFTMDS-QHLISPPYVIKPLKGGSSLG 140
                I++     N+   DS    +     +K    GSS+G
Sbjct: 107 RNTKYIVIFQNDKNKPDWDSVSKQLGEVVFVKAANQGSSVG 147


>gi|225437102|ref|XP_002273573.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|296085234|emb|CBI28729.3| unnamed protein product [Vitis vinifera]
          Length = 735

 Score = 95.6 bits (237), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 86/221 (38%), Gaps = 18/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E      + E   + +      A     DK  SK+++ + GVP+ P    
Sbjct: 109 AIHPGYGFLSESAAFAQLCEDEGLTFIGPPASAIRDMGDKSASKRIMGAAGVPLVPGYHG 168

Query: 114 NRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
           N   +D        I  P +IKP  GG   G+ +++         L    ++++    + 
Sbjct: 169 NEQDIDFMKSEGEKIGYPVLIKPTHGGGGKGMRIVQSPSEFVEAFLGAQREAAASFGINT 228

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDI 223
           +L+E+Y+     +   + GD   +V        +     ++          PA  I  D 
Sbjct: 229 ILLEKYITKPRHIEVQIFGDKFGNVL-----HLNERDCSVQRRHQKIIEEAPAPNIVNDF 283

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              + + A  A +A+G       +F+ D +S + +++E+N 
Sbjct: 284 RTHLGQAAVSAAKAVGYHNAGTVEFIVDTISGQFYFMEMNT 324


>gi|302412655|ref|XP_003004160.1| urea amidolyase [Verticillium albo-atrum VaMs.102]
 gi|261356736|gb|EEY19164.1| urea amidolyase [Verticillium albo-atrum VaMs.102]
          Length = 1794

 Score = 95.6 bits (237), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 43/256 (16%), Positives = 92/256 (35%), Gaps = 17/256 (6%)

Query: 19  GKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIP 78
                  L   G  VS+  +D    L+LA      A    +G   E+    + +E   + 
Sbjct: 694 AVRIIKTLRKLG--VSETYLDGQQILILAKESGAEAIIPGYGFLAENADFASQVEAAGLV 751

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLK 134
           +             K  +++V  S GVPV P     +      +     I  P ++K   
Sbjct: 752 WIGPTPDQMRKLGLKHLAREVAISAGVPVVPGSKSLLESVDQALAEAERIKYPVMLKSTA 811

Query: 135 GGSSLGIIVIKKDQSIPLDL----LQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDV 189
           GG  +G+      +S+          + +      + +E +++    +   ++GD   +V
Sbjct: 812 GGGGIGLSRCDDAKSLTEAYHSVQRLAEANFGDAGMFVEHFIENARHIEVQMLGDGEGNV 871

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           T      +      L+  +       PA  +P  +   ++  A     A+  R +   ++
Sbjct: 872 T-----TAGERDCSLQRRNQKVVEESPAVFVPPAVRDRMREAAKRLAAAVKYRNVGTIEY 926

Query: 249 LFDPLSRKVFWLEINV 264
           ++D  + + ++LE+N 
Sbjct: 927 IYDVDTEEFYFLEVNT 942


>gi|222099079|ref|YP_002533647.1| Methyltransferase type 11 [Thermotoga neapolitana DSM 4359]
 gi|221571469|gb|ACM22281.1| Methyltransferase type 11 [Thermotoga neapolitana DSM 4359]
          Length = 137

 Score = 95.6 bits (237), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 28/130 (21%), Positives = 53/130 (40%), Gaps = 14/130 (10%)

Query: 180 GVMGDASLDVTEIAVPKSDF----------YSYELKYSSLN---STHVLPAKIPLDIYKE 226
           G++G+       + + + D+            YE K+   +   +   +PA++P +  K 
Sbjct: 2   GIIGNPPESYVVLPIIEEDYSALPPELPRICGYEAKWLPDSPYWNIKSVPAQLPEETEKF 61

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           +        + + CR   R D+  D        LE+N  PG        +MA  AG S+ 
Sbjct: 62  IIECCLKLFERLECRDYCRFDWRLDAEGN-PKLLEVNPNPGWCWDGHLAKMAKIAGMSYA 120

Query: 287 ELLLWMVEDA 296
           E+L  +++ A
Sbjct: 121 EMLEAILKAA 130


>gi|311747376|ref|ZP_07721161.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Algoriphagus
           sp. PR1]
 gi|311302644|gb|EAZ83258.2| acetyl-CoA carboxylase, biotin carboxylase subunit [Algoriphagus
           sp. PR1]
          Length = 449

 Score = 95.6 bits (237), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 81/221 (36%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+     I E   I +  +         DK  +K  + + GVP  P    
Sbjct: 77  AIHPGYGFLSENAEFSRICEEYGIKFIGASPEMIGKMGDKATAKATMRAAGVPTVPGSEG 136

Query: 112 LVNRFTMDS--QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS-----SSWNHGD 164
           L++         + +  P ++K   GG   G+ ++K++         +     +++ +  
Sbjct: 137 LLDSIEQGVKLANEMGYPVILKATAGGGGRGMRIVKEESGFKKAWDDARMESGAAFGNDG 196

Query: 165 QLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
             L E++V+    +   ++GD       ++           K             I  ++
Sbjct: 197 LYL-EKFVEEPRHIEIQIIGDKHGKACHLSERDCSIQRRHQK----LVEETPSPFITDEL 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            K +   A    +AIG  G    +FL D  +R  +++E+N 
Sbjct: 252 RKAMGEAAIKGAEAIGYEGAGTIEFLVDK-NRNFYFMEMNT 291


>gi|34495473|ref|NP_899688.1| biotin carboxylase [Chromobacterium violaceum ATCC 12472]
 gi|34101329|gb|AAQ57698.1| probable biotin carboxylase [Chromobacterium violaceum ATCC 12472]
          Length = 654

 Score = 95.6 bits (237), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 81/220 (36%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+    + +    + +            DK R++Q++ + GVPV P    
Sbjct: 77  AIHPGYGFLSENPGFASAVAEAGLVFIGPDADTIVQMGDKARARQLMEAAGVPVLPGSPE 136

Query: 114 NRFT----MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
              +    +++   I  P ++KP  GG   G+ V+  +  +   +  +           +
Sbjct: 137 ATESYGLILETCAEIGYPVILKPSAGGGGKGMQVVWSEAELREAVDAAVRIGRSSFGDGR 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           LL+E+YV     L   + GD       +   +        K             +P D  
Sbjct: 197 LLVERYVSQPRHLEVQIFGDGRGAAVHLFERECSLQRRHQKI----VEEAPACGLPADTR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +   A    QAIG R     +F+  P   + ++LE+N 
Sbjct: 253 EALLAAAVRGAQAIGYRNAGTFEFILAP-DGRFYFLEVNT 291


>gi|77166923|gb|ABA62436.1| D-alanine-D-alanine ligase [Clostridium perfringens]
          Length = 106

 Score = 95.6 bits (237), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 27/110 (24%), Positives = 53/110 (48%), Gaps = 4/110 (3%)

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHV 214
               +  +  +++IE+Y+ G E+TC ++    L V  I  PK  F+    KY    +   
Sbjct: 1   AVLEALKYDTEVMIEEYIKGDEITCPIIDGKMLPVLAIK-PKGKFFDIASKYGDGGADEF 59

Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +  ++  D++KEV+++A   ++ + C   +R D L        + LE+N 
Sbjct: 60  I-VELNEDLHKEVEKMALETYKLLKCDVYARVDMLV--KDNIPYVLEVNT 106


>gi|15606634|ref|NP_214014.1| biotin carboxylase [Aquifex aeolicus VF5]
 gi|2983860|gb|AAC07413.1| biotin carboxylase [Aquifex aeolicus VF5]
          Length = 477

 Score = 95.6 bits (237), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 47/259 (18%), Positives = 97/259 (37%), Gaps = 27/259 (10%)

Query: 16  LSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELL 75
           L +G    + L+     V  +D+ + VG    H          +G   E+          
Sbjct: 50  LITGDPIRAYLDY----VRIVDLAKQVGADAIHPG--------YGFLAENADFARYCRRR 97

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ----HLISPPYVIK 131
            I +         +  DK+++K+V+   G+P  P       T++        I  P ++K
Sbjct: 98  GITFIGPTPEQIEMFGDKVKAKKVMKEVGLPTIPGTEEPVRTLEDAKHAVKEIGFPVMLK 157

Query: 132 PLKGGSSLGIIVIKKDQSIPL----DLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDAS 186
              GG   G+ VI+ ++ +         ++ ++     L IE+YV+    +   ++GD  
Sbjct: 158 AAYGGGGRGMRVIRNEEELEKNFESAFREAETFFGKGDLFIEKYVENPKHIEVQILGDKY 217

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
            ++  +            K        + P  K+P D+  ++   A  A   +G      
Sbjct: 218 GNIIHLGERDCSIQRRHQKL-----IEIAPSPKLPQDLRMKILGNAVRAMTRVGYENAGT 272

Query: 246 SDFLFDPLSRKVFWLEINV 264
            +FL D  + + +++E+N 
Sbjct: 273 LEFLVDLKTGEYYFIEMNT 291


>gi|260460716|ref|ZP_05808966.1| acetyl-CoA carboxylase, biotin carboxylase [Mesorhizobium
           opportunistum WSM2075]
 gi|259033293|gb|EEW34554.1| acetyl-CoA carboxylase, biotin carboxylase [Mesorhizobium
           opportunistum WSM2075]
          Length = 447

 Score = 95.6 bits (237), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 79/220 (35%), Gaps = 18/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     IL    I +         +  DK+ +K+     G+PV P    
Sbjct: 77  AVHPGYGFLSENAKFADILAAHNITFIGPSGDHIRIMGDKIEAKRTAKRLGIPVVPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
            +   +        I  P +IK   GG   G+ V   +  + + L     ++ +    D 
Sbjct: 137 AVTEEKEAKRIAAEIGYPVIIKASAGGGGRGMKVAHTEADLEVALQTARSEAGAAFGDDA 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+Y+     +   V GD                S + ++  +      PA +  +  
Sbjct: 197 VYIEKYLQKPRHIEVQVFGDGFGRGVHFGERD---CSLQRRHQKVWEEANSPA-LNAEER 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +  +   A   +G  G    +FL+   + + +++E+N 
Sbjct: 253 SRIGSICATAIADLGYSGAGTIEFLY--ENGEFYFIEMNT 290


>gi|83414207|dbj|BAE53894.1| D-alanine:D-alanine ligase [Streptococcus mutans]
          Length = 96

 Score = 95.2 bits (236), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 30/96 (31%), Positives = 49/96 (51%), Gaps = 2/96 (2%)

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA--VPKSDFYSYELKYSSLNST 212
             + +  +  ++LIEQ VD  E+  G++G+  +  T     V    FY YE KY     T
Sbjct: 1   AIALALKYDSRVLIEQGVDAREIEVGILGNTDVKTTLPGEIVKDVAFYDYEAKYIDNKIT 60

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
             +PA+I   I ++++  A  A + + C G+SR DF
Sbjct: 61  MAIPAEIDPVIVEKMRDYAATAFRTLDCCGLSRCDF 96


>gi|242084122|ref|XP_002442486.1| hypothetical protein SORBIDRAFT_08g020810 [Sorghum bicolor]
 gi|241943179|gb|EES16324.1| hypothetical protein SORBIDRAFT_08g020810 [Sorghum bicolor]
          Length = 752

 Score = 95.2 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 85/221 (38%), Gaps = 18/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E      + E   + +      A     DK  SK+++ + GVP+ P    
Sbjct: 130 AIHPGYGFLSESADFAQLCETEGLKFIGPPASAIRDMGDKSASKRIMGAAGVPLVPGYHG 189

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
               ++        I  P +IKP  GG   G+ ++++       +L    ++++    + 
Sbjct: 190 ADQDIELLKLEADKIGYPVLIKPTHGGGGKGMRIVERPDEFVDAVLSAQREAAASFGVNT 249

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDI 223
           LLIE+Y+     +   V GD   +   +           L+          PA  +  + 
Sbjct: 250 LLIEKYITQPRHVEVQVFGDQHGNAIYLYE-----RDCSLQRRHQKIIEEAPAPNVTAEF 304

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              +   A  A +A+G       +F+ D LS + +++E+N 
Sbjct: 305 RSHIGGAAVSAAKAVGYYNAGTVEFIVDTLSGEFYFMEMNT 345


>gi|1857222|gb|AAB49637.1| vancomycin resistance protein [Enterococcus casseliflavus]
          Length = 123

 Score = 95.2 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 33/124 (26%), Positives = 61/124 (49%), Gaps = 8/124 (6%)

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPY 128
           +++PY   G+  SAL M+K    Q  ++ GV   P+IL+       + +         P 
Sbjct: 1   MKLPYVGCGVAGSALCMNKWLLHQAAAAIGVQSAPTILLTNQANQQEQIEAFIQTHGFPV 60

Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD 188
             KP + GSS GI  +   + I   L +  ++ +   +L+++ + G+E+ CG++G+ SL 
Sbjct: 61  FFKPNEAGSSKGITKVTCVEEIASALKE--AFTYCSAVLLQKNIAGVEIGCGILGNDSLT 118

Query: 189 VTEI 192
           V   
Sbjct: 119 VGAC 122


>gi|330981476|gb|EGH79579.1| Urea amidolyase-related protein [Pseudomonas syringae pv. aptata
           str. DSM 50252]
          Length = 767

 Score = 95.2 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 44/256 (17%), Positives = 88/256 (34%), Gaps = 30/256 (11%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       E   I +         +   K  ++ +    GVP+     +
Sbjct: 77  AIHPGYGFLSENAGFAQACEDAGIAFVGPTPEQLRVFGLKHTARALARQHGVPMLEGTEL 136

Query: 114 N---RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQL 166
                  + + H I  P ++K   GG  +G+ V +  + +                   +
Sbjct: 137 LDSLESAIAAAHTIGYPVMLKSTAGGGGIGMRVCRSAEELADSFEAVKRLGQNNFSDAGV 196

Query: 167 LIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
            IE+Y+     L   V GD   +V  + V          K             +P  + +
Sbjct: 197 FIEKYIQRARHLEVQVFGDGQGEVLALGVRDCSVQRRNQKVL----EETPAPNLPHGMAE 252

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285
           E+   A    +A+  R     +F+FD   ++ ++LE+N             +    G + 
Sbjct: 253 ELCIAAVQLARAVNYRSAGTVEFVFDSEDQRFYFLEVNT-----------RLQVEHGVTE 301

Query: 286 R----ELLLWMVEDAS 297
           +    +L+ WMV+ A+
Sbjct: 302 QVWGVDLVSWMVQLAA 317


>gi|19551919|ref|NP_599921.1| pyruvate carboxylase [Corynebacterium glutamicum ATCC 13032]
 gi|62389578|ref|YP_224980.1| pyruvate carboxylase [Corynebacterium glutamicum ATCC 13032]
 gi|2708717|gb|AAB92588.1| pyruvate carboxylase [Corynebacterium glutamicum]
 gi|2879823|emb|CAA70739.1| pyruvate carboxylase [Corynebacterium glutamicum]
 gi|21323455|dbj|BAB98082.1| Pyruvate carboxylase [Corynebacterium glutamicum ATCC 13032]
 gi|41324913|emb|CAF19394.1| PYRUVATE CARBOXYLASE [Corynebacterium glutamicum ATCC 13032]
          Length = 1140

 Score = 95.2 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 40/240 (16%), Positives = 88/240 (36%), Gaps = 19/240 (7%)

Query: 35  QIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKM 94
            +D+D  +G     +K D  +   +G   E+  +        I +         L+ DK 
Sbjct: 71  YLDIDEIIGAA-KKVKADAIYPG-YGFLSENAQLARECAENGITFIGPTPEVLDLTGDKS 128

Query: 95  RSKQVVSSCGVPV----CPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150
           R+       G+PV     PS  ++     ++   + P  +K + GG   G+  +     +
Sbjct: 129 RAVTAAKKAGLPVLAESTPSKNIDEIVKSAEGQ-TYPIFVKAVAGGGGRGMRFVASPDEL 187

Query: 151 P----LDLLQSSSWNHGDQLLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205
                    ++ +      + +E+  ++   +   ++GD + +V  +           L+
Sbjct: 188 RKLATEASREAEAAFGDGAVYVERAVINPQHIEVQILGDHTGEVVHLYE-----RDCSLQ 242

Query: 206 YSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
                   + PA+ +  ++   +   A    ++IG +G    +FL D     VF  E+N 
Sbjct: 243 RRHQKVVEIAPAQHLDPELRDRICADAVKFCRSIGYQGAGTVEFLVDEKGNHVFI-EMNP 301


>gi|330898476|gb|EGH29895.1| Urea amidolyase-related protein [Pseudomonas syringae pv. japonica
           str. M301072PT]
          Length = 698

 Score = 95.2 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 44/256 (17%), Positives = 88/256 (34%), Gaps = 30/256 (11%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       E   I +         +   K  ++ +    GVP+     +
Sbjct: 77  AIHPGYGFLSENAAFAQACEDAGIAFVGPTPEQLRVFGLKHTARALARQHGVPMLEGTEL 136

Query: 114 N---RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQL 166
                  + + H I  P ++K   GG  +G+ V +  + +                   +
Sbjct: 137 LDSLESAIAAAHTIGYPVMLKSTAGGGGIGMRVCRSAEELADSFEAVKRLGQNNFSDAGV 196

Query: 167 LIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
            IE+Y+     L   V GD   +V  + V          K             +P  + +
Sbjct: 197 FIEKYIQRARHLEVQVFGDCQGEVLALGVRDCSVQRRNQKVL----EETPAPNLPHGMAE 252

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285
           E+   A    +A+  R     +F+FD   ++ ++LE+N             +    G + 
Sbjct: 253 ELCIAAVKLARAVNYRSAGTVEFVFDSEDQRFYFLEVNT-----------RLQVEHGVTE 301

Query: 286 R----ELLLWMVEDAS 297
           +    +L+ WMV+ A+
Sbjct: 302 QVWGVDLVSWMVQLAA 317


>gi|302775638|ref|XP_002971236.1| hypothetical protein SELMODRAFT_411779 [Selaginella moellendorffii]
 gi|300161218|gb|EFJ27834.1| hypothetical protein SELMODRAFT_411779 [Selaginella moellendorffii]
          Length = 636

 Score = 95.2 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 80/221 (36%), Gaps = 29/221 (13%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+           I +      A +L  DK  SK+++S   VPV P    
Sbjct: 112 AIHPGYGFLSENSKFAQACHESGITFIGPSAAAISLMGDKSASKKLMSGANVPVVPGYHG 171

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQS----IPLDLLQSSSWNHGDQ 165
           +  + +        I  P +IKP+ GG   G+ ++         +   L +S++     +
Sbjct: 172 DDQSHELLQSEADRIGYPVLIKPVLGGGGKGMRIVHSRDEFLDSLRSALRESAAAFGDTR 231

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDI 223
           +LIE+Y+     +   + GD   +V              ++          PA +   D 
Sbjct: 232 VLIEKYIAQPRHIEVQIFGDRFGNVV-----HLFERDCSVQRRHQKIIEEAPAPLMSDDF 286

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              + + A  A +           F+ D  +   F++E+N 
Sbjct: 287 RNSIGQAAVNAAK-----------FIVDTATGDFFFMEMNT 316


>gi|325962779|ref|YP_004240685.1| acetyl/propionyl-CoA carboxylase, subunit alpha [Arthrobacter
           phenanthrenivorans Sphe3]
 gi|323468866|gb|ADX72551.1| acetyl/propionyl-CoA carboxylase, alpha subunit [Arthrobacter
           phenanthrenivorans Sphe3]
          Length = 745

 Score = 95.2 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 88/223 (39%), Gaps = 16/223 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      L+   I +   GI A  +  DK+RSK  V+  GVPV P +  
Sbjct: 92  AVHPGYGFLSENADFARALDQAGITFIGPGIDALDVMGDKIRSKNHVAGYGVPVVPGVAE 151

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL-----QSSSWNHGD 164
              T +    +   +  P +IKP  GG   G+ V+++   +P  L       +S++   D
Sbjct: 152 PGMTDEQLVAAAAAVGFPLLIKPSAGGGGKGMHVVERAADLPATLATARRVAASAFG-DD 210

Query: 165 QLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLN-STHVLPAKIPLD 222
            L +E+ V     +   V+ D   +V  +   +        K      S  +        
Sbjct: 211 TLFLERLVSTPRHIEVQVLADHHGNVIHLGERECSLQRRHQKVIEEAPSPLLESHPEGAA 270

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLF-DPLSRKVFWLEINV 264
           I   +   A  A +++   G    +FL  D    + +++E+N 
Sbjct: 271 IRARIGEAACNAARSVNYSGAGTVEFLVSDDSPDEFYFMEMNT 313


>gi|77166871|gb|ABA62410.1| D-alanine-D-alanine ligase [Clostridium perfringens]
          Length = 106

 Score = 95.2 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 28/110 (25%), Positives = 53/110 (48%), Gaps = 4/110 (3%)

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHV 214
               +  +  +++IE+Y+ G E+TC ++    L V  I  PK  F+    KY    +   
Sbjct: 1   AVLEALKYDTEVMIEEYIKGDEITCPIIDGKMLPVLAIK-PKGKFFDITSKYEDGGADEF 59

Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +  K+  D++KEV+++A   ++ + C   +R D L        + LE+N 
Sbjct: 60  I-VKLNEDLHKEVEKMALETYKLLKCDVYARVDMLV--KDNIPYVLEVNT 106


>gi|149194561|ref|ZP_01871657.1| Biotin carboxylase-like protein [Caminibacter mediatlanticus TB-2]
 gi|149135305|gb|EDM23785.1| Biotin carboxylase-like protein [Caminibacter mediatlanticus TB-2]
          Length = 476

 Score = 95.2 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 78/220 (35%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+G      E   I +         L  DKM SK  +   G+PV      
Sbjct: 77  AIHPGYGFLSENGDFARACERAGIKFIGPRADDIDLYGDKMASKTAMKKVGMPVLEGTEE 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS----IPLDLLQSSSWNHGDQ 165
            I+  +        I  P +IK   GG   G+ +++ ++           +S  +    +
Sbjct: 137 PIIDIKEAEKIAKQIGFPVIIKAAFGGGGRGMRIVRSEEEFKELFEAATSESMKFFGRGE 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+YV+    +   ++ D   +V  + +          K             +  D  
Sbjct: 197 VFIEKYVENPRHIEVQILADTHGNVIHLGIRDCSIQRRHQK----VIEIAESPSLSKDTR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            ++  ++  A + +G       +FL D      +++E+N 
Sbjct: 253 DKICEVSVNALKKLGYVSAGTVEFLVDENEN-FYFIEMNT 291


>gi|85074727|ref|XP_965731.1| methylcrotonoyl-CoA carboxylase alpha chain, mitochondrial
           precursor [Neurospora crassa OR74A]
 gi|28927544|gb|EAA36495.1| methylcrotonoyl-CoA carboxylase alpha chain, mitochondrial
           precursor [Neurospora crassa OR74A]
 gi|38567316|emb|CAE76604.1| probable methylcrotonoyl-CoA carboxylase biotin carboxylase chain
           [Neurospora crassa]
          Length = 743

 Score = 95.2 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 39/223 (17%), Positives = 87/223 (39%), Gaps = 20/223 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            LH  +G   E+       E   I +      A     DK RSK+++++ GVP  P    
Sbjct: 125 ALHPGYGFLSENPAFAKACEEAGIVFVGPPAKAMTDMGDKARSKEIMNASGVPCVPGYHG 184

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGD 164
           +  +++        I  P ++K +KGG   G+ +++        L  + +     +  G 
Sbjct: 185 SEQSVEQLKAKAADIKYPVLLKSVKGGGGKGMRIVRNADEFEAQLKSARAEARASFGEGG 244

Query: 165 QLL-IEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD 222
           +++ +E+Y+     +   +  D   +   +           ++          PA +  D
Sbjct: 245 EVMLVEKYIVRPRHVEVQIFADRHGNCVALGE-----RDCSVQRRHQKILEESPAPLLDD 299

Query: 223 IYKE-VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + ++ +   A  A  A+   G    +F+ D  + + +++E+N 
Sbjct: 300 VTRKDLWDKARKAALAVDYVGAGTVEFILDKDTNEFYFMEMNT 342


>gi|77166887|gb|ABA62418.1| D-alanine-D-alanine ligase [Clostridium perfringens]
          Length = 106

 Score = 95.2 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 28/110 (25%), Positives = 53/110 (48%), Gaps = 4/110 (3%)

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHV 214
               +  +  +++IE+Y+ G E+TC ++    L V  I  PK  F+    KY    +   
Sbjct: 1   AVLEALKYDTEVMIEEYIKGDEITCPIIDGKMLPVLAIK-PKGKFFDIASKYEDGGADEF 59

Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +  K+  D++KEV+++A   ++ + C   +R D L        + LE+N 
Sbjct: 60  I-VKLNEDLHKEVEKMALETYKLLKCDVYARVDMLVR--DNVPYVLEVNT 106


>gi|226507364|ref|NP_001147055.1| methylcrotonoyl-CoA carboxylase subunit alpha [Zea mays]
 gi|195606940|gb|ACG25300.1| methylcrotonoyl-CoA carboxylase subunit alpha [Zea mays]
          Length = 751

 Score = 95.2 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 44/222 (19%), Positives = 84/222 (37%), Gaps = 20/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E      + E   + +      A     DK  SK+++ + GVP+ P    
Sbjct: 129 AIHPGYGFLSESADFAQLCEAEGLKFIGPPASAIRDMGDKSASKRIMGAAGVPLVPGYHG 188

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQS-----IPLDLLQSSSWNHGD 164
               ++        I  P +IKP  GG   G+ ++++        +      ++S+    
Sbjct: 189 ADQDVELLKLEADKIGYPVLIKPTHGGGGKGMRIVERPDEFVDSVLSAQREAAASFGVNT 248

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLD 222
            LLIE+Y+     +   V GD   +   +           L+          PA  +P +
Sbjct: 249 -LLIEKYITQPRHVEVQVFGDQHGNAIYLYE-----RDCSLQRRHQKIIEEAPAPNVPAE 302

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
               +   A  A +A+G       +F+ D LS + +++E+N 
Sbjct: 303 FRSHIGGAAVSAAKAVGYYNAGTVEFIVDTLSGEFYFMEMNT 344


>gi|51892329|ref|YP_075020.1| biotin carboxylase [Symbiobacterium thermophilum IAM 14863]
 gi|51856018|dbj|BAD40176.1| biotin carboxylase [Symbiobacterium thermophilum IAM 14863]
          Length = 449

 Score = 95.2 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 77/220 (35%), Gaps = 16/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+           I +      A      K  SK ++   GVP  P    
Sbjct: 77  AIHPGYGFLAENPFFAEACRQWNIAFIGPHPEAIRAMGMKDASKALMKKAGVPTIPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS----SWNHGDQ 165
            +      +     I  P ++K   GG   GI +      +   L +++    +      
Sbjct: 137 VVESEAEALRVAEEIGYPVMVKATAGGGGRGIRIANSPDELVQALQKAASEAGAAFGNAA 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+Y+  G  +   V+GD   ++  +   +        K             +P +  
Sbjct: 197 VFVEKYIQVGRHIEVQVLGDQHGNIIHLGERECSIQRRRQKML----EEAPAPFLPEETR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + ++     A +A+G       + ++D ++ + ++LE+N 
Sbjct: 253 QRIREAGVRAARAVGYDNAGTVEMIYDEMTGEFYFLEMNT 292


>gi|56368328|emb|CAF02121.1| D-alanine-D-alanine ligase [Oenococcus oeni]
 gi|56368338|emb|CAF02126.1| D-alanine-D-alanine ligase [Oenococcus oeni]
 gi|56368342|emb|CAF02128.1| D-alanine-D-alanine ligase [Oenococcus oeni]
          Length = 147

 Score = 95.2 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 33/101 (32%), Positives = 55/101 (54%), Gaps = 6/101 (5%)

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV 105
           + +LK D+ F  +HGN GEDG +  +  L+ IPY  SG+ A A+S DK+ +K++++  G+
Sbjct: 47  IRNLKLDVLFPSVHGNLGEDGTLAGLFRLMNIPYVGSGLRAHAISFDKVITKELMTVNGI 106

Query: 106 PVCPSILV-----NRFTMDS-QHLISPPYVIKPLKGGSSLG 140
                I++     N+   DS    +     +K    GSS+G
Sbjct: 107 RNTKYIVIFQNDKNKPDWDSVSKQLGEVVFVKAANQGSSVG 147


>gi|116192939|ref|XP_001222282.1| hypothetical protein CHGG_06187 [Chaetomium globosum CBS 148.51]
 gi|88182100|gb|EAQ89568.1| hypothetical protein CHGG_06187 [Chaetomium globosum CBS 148.51]
          Length = 747

 Score = 95.2 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 86/223 (38%), Gaps = 20/223 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            LH  +G   E+       E   I +      A A   DK RSK+++++ GVP  P    
Sbjct: 127 ALHPGYGFLSENPAFARACEEAGIVFVGPPATAMADMGDKARSKEIMTAAGVPCVPGYHG 186

Query: 114 NRFT----MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH------G 163
              +          I  P ++K +KGG   G+ +++ D+     L  + +         G
Sbjct: 187 AEQSPGELRARAREIKYPVLLKSVKGGGGKGMRIVRTDEEFEAQLKSARAEARASFGDGG 246

Query: 164 DQLLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD 222
           + +L+E+Y V    +   V  D   +   +           ++          PA +  D
Sbjct: 247 EVMLVEKYVVRPRHVEVQVFADKYGNCVALGE-----RDCSVQRRHQKIVEESPAPLLDD 301

Query: 223 IYKE-VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +  +   A  A  A+G  G    +F+ D  + + +++E+N 
Sbjct: 302 VTRHDLWEKARTAALAVGYVGAGTVEFILDKDTGEFYFMEMNT 344


>gi|220912174|ref|YP_002487483.1| carbamoyl-phosphate synthase L chain ATP-binding [Arthrobacter
           chlorophenolicus A6]
 gi|219859052|gb|ACL39394.1| Carbamoyl-phosphate synthase L chain ATP-binding [Arthrobacter
           chlorophenolicus A6]
          Length = 733

 Score = 95.2 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 50/228 (21%), Positives = 92/228 (40%), Gaps = 26/228 (11%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      L+   I +   G+ A  +  DK+RSK  V+  GVPV P +  
Sbjct: 100 AVHPGYGFLSENADFARALDAAGIAFMGPGVEALNIMGDKIRSKNHVAGYGVPVVPGVAR 159

Query: 114 NRFT----MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL-----QSSSWNHGD 164
              T    +++   +  P +IKP  GG   G+ V++K   +P  L       +S++   D
Sbjct: 160 PGMTDAELIEAAPAVGFPLLIKPSAGGGGKGMHVVEKPGDLPAVLATARRVAASAFG-DD 218

Query: 165 QLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL-- 221
            L +E+ V     +   V+ D+  +V  +   +        K          P+ +    
Sbjct: 219 TLFLERLVTTPRHIEVQVLADSHGNVIHLGERECSLQRRHQK-----VIEEAPSPLLEGL 273

Query: 222 ----DIYKEVQRLAFLAHQAIGCRGISRSDFLF-DPLSRKVFWLEINV 264
               D+   +   A  A +++   G    +FL  D    + F++E+N 
Sbjct: 274 PHGADVRDRIGEAACNAARSVNYTGAGTVEFLVSDDAPDEFFFMEMNT 321


>gi|218674200|ref|ZP_03523869.1| acetyl-CoA carboxylase biotin carboxylase subunit [Rhizobium etli
           GR56]
          Length = 420

 Score = 95.2 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 86/220 (39%), Gaps = 18/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     IL+   I +         +  DK+ +K      G+PV P    
Sbjct: 48  AVHPGYGFLSENAKFADILDAHGITFIGPTADHIRIMGDKITAKTTALELGIPVVPGSDG 107

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
            +      + +   I  P +IK   GG   G+ V + +  +         ++++    D 
Sbjct: 108 EVKTEEDALRTAAEIGYPVLIKATAGGGGRGMKVARSEADLIEAWSTARTEAAAAFGNDA 167

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+Y+     +   V GD   +   +        S + ++  +      PA + ++  
Sbjct: 168 VYMEKYLGKPRHIEIQVFGDGEGNAIHLGERD---CSLQRRHQKVWEEANSPA-LNVEQR 223

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            ++ ++   A + +  RG    +FL+   + + +++E+N 
Sbjct: 224 MKIGQICADAMKKLKYRGAGTIEFLY--ENGEFYFIEMNT 261


>gi|77166875|gb|ABA62412.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|77166885|gb|ABA62417.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|77166889|gb|ABA62419.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|77166891|gb|ABA62420.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|77166893|gb|ABA62421.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|77166895|gb|ABA62422.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|77166907|gb|ABA62428.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|77166909|gb|ABA62429.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|77166911|gb|ABA62430.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|77166913|gb|ABA62431.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|77166917|gb|ABA62433.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|77166921|gb|ABA62435.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|77166927|gb|ABA62438.1| D-alanine-D-alanine ligase [Clostridium perfringens]
          Length = 106

 Score = 95.2 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 27/110 (24%), Positives = 53/110 (48%), Gaps = 4/110 (3%)

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHV 214
               +  +  +++IE+Y+ G E+TC ++    L V  I  PK  F+    KY    +   
Sbjct: 1   AVLEALKYDTEVMIEEYIKGDEITCPIIDGKMLPVLAIK-PKGKFFDIASKYEDGGADEF 59

Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +  ++  D++KEV+++A   ++ + C   +R D L        + LE+N 
Sbjct: 60  I-VELNEDLHKEVEKMALETYKLLKCDVYARVDMLV--KDNIPYVLEVNT 106


>gi|77166903|gb|ABA62426.1| D-alanine-D-alanine ligase [Clostridium perfringens]
          Length = 106

 Score = 95.2 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 27/110 (24%), Positives = 53/110 (48%), Gaps = 4/110 (3%)

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHV 214
               +  +  +++IE+Y+ G E+TC ++    L V  I  PK  F+    KY    +   
Sbjct: 1   AVLEALKYDTEVMIEEYIKGDEITCPIIDGKMLPVLAIK-PKGKFFDIASKYEDGGADEF 59

Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +  ++  D++KEV+++A   ++ + C   +R D L        + LE+N 
Sbjct: 60  I-VELNEDLHKEVEKMALETYKLLKCDVYARVDMLVR--DNIPYVLEVNT 106


>gi|206890940|ref|YP_002248245.1| acetyl-CoA carboxylase, biotin carboxylase [Thermodesulfovibrio
           yellowstonii DSM 11347]
 gi|206742878|gb|ACI21935.1| acetyl-CoA carboxylase, biotin carboxylase [Thermodesulfovibrio
           yellowstonii DSM 11347]
          Length = 451

 Score = 94.8 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 78/220 (35%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+           I +         +  DK +++Q++   G+PV P    
Sbjct: 79  AIHPGYGFLSENAQFAEACVNSGIVFIGPAPENIKIGGDKAKARQILKRKGIPVVPGSDG 138

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGDQ 165
            +  +   +     I  P + K   GG   G+ ++ +++ I         ++ +     +
Sbjct: 139 PVNTDEACIKIVKKIGLPIIFKASAGGGGRGMRIVNEEKDIEQAFFMAQREALAAFGNGE 198

Query: 166 LLIEQ-YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           L IE+ +     +   ++ D   ++  +            K             +   + 
Sbjct: 199 LYIEKYFPKVRHIEVQILADKQGNIIHLGERDCTIQRRHQK----LIEEAPSPVLNEKLR 254

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K++   A  A +A+  R I   +F+ D      +++EIN 
Sbjct: 255 KKIGEYAVKAAKALKFRNIGTFEFIVDDELN-PYFIEINT 293


>gi|30678473|ref|NP_849583.1| MCCA; methylcrotonoyl-CoA carboxylase [Arabidopsis thaliana]
 gi|20455046|sp|Q42523|MCCA_ARATH RecName: Full=Methylcrotonoyl-CoA carboxylase subunit alpha,
           mitochondrial; Short=MCCase subunit alpha; AltName:
           Full=3-methylcrotonyl-CoA carboxylase 1; AltName:
           Full=3-methylcrotonyl-CoA:carbon dioxide ligase subunit
           alpha; Flags: Precursor
 gi|17979456|gb|AAL50065.1| At1g03090/F10O3_8 [Arabidopsis thaliana]
 gi|332189406|gb|AEE27527.1| methylcrotonoyl-CoA carboxylase subunit alpha [Arabidopsis
           thaliana]
          Length = 734

 Score = 94.8 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 86/221 (38%), Gaps = 18/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E      + E   + +      A     DK  SK+++ + GVP+ P    
Sbjct: 113 AIHPGYGFLSESSDFAQLCEDSGLTFIGPPASAIRDMGDKSASKRIMGAAGVPLVPGYHG 172

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP---LDLLQSSSWNHG-DQ 165
           +   +D        I  P +IKP  GG   G+ +++  +      L   + ++ + G + 
Sbjct: 173 HEQDIDHMKSEAEKIGYPIIIKPTHGGGGKGMRIVQSGKDFADSFLGAQREAAASFGVNT 232

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDI 223
           +L+E+Y+     +   + GD   +V  +           ++          PA  I    
Sbjct: 233 ILLEKYITRPRHIEVQIFGDKHGNVLHLYE-----RDCSVQRRHQKIIEEAPAPNISEKF 287

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              + + A  A +A+G       +F+ D  S + +++E+N 
Sbjct: 288 RANLGQAAVSAARAVGYYNAGTVEFIVDTESDQFYFMEMNT 328


>gi|302920967|ref|XP_003053187.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256734127|gb|EEU47474.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 708

 Score = 94.8 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 80/222 (36%), Gaps = 18/222 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            LH  +G   E+       E   I +      A A    K RSK+++++  VP  P    
Sbjct: 116 ALHPGYGFLSENSKFAERCEEEGIVFVGPPATAMADMGHKARSKEIMTAANVPCVPGYHG 175

Query: 114 NR----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGD 164
                   ++    I+ P ++K ++GG   G+ ++  +      L  + +     +  G 
Sbjct: 176 TEQGEQELLEHAKKITFPVLLKSVRGGGGKGMRIVLTEDEFLTQLKSARAEAKASFGEGG 235

Query: 165 QLL-IEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD 222
           +++ +E+Y+     +   V  D   +   +            K             +   
Sbjct: 236 EVMLVEKYIVRPRHVEVQVFADKWGNTVALGERDCSVQRRHQKIL----EESPAPDLDTA 291

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              ++   A  A  A+G  G    +F+ D  + K +++E+N 
Sbjct: 292 TQHDLWDKARKAASAVGYVGAGTVEFILDKDTNKFYFMEMNT 333


>gi|241204459|ref|YP_002975555.1| acetyl-CoA carboxylase biotin carboxylase subunit [Rhizobium
           leguminosarum bv. trifolii WSM1325]
 gi|240858349|gb|ACS56016.1| acetyl-CoA carboxylase, biotin carboxylase [Rhizobium leguminosarum
           bv. trifolii WSM1325]
          Length = 449

 Score = 94.8 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 86/220 (39%), Gaps = 18/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     ILE   I +         +  DK+ +K      G+PV P    
Sbjct: 77  AVHPGYGFLSENAKFADILEAHGITFIGPTADHIRIMGDKITAKTTALELGIPVVPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
            +      + +   I  P +IK   GG   G+ V K +  +         ++++    D 
Sbjct: 137 EVKTEEDALKTAAEIGYPVLIKATAGGGGRGMKVAKSEADVIEAWSTARTEAAAAFGNDA 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+Y+     +   V GD   +   +        S + ++  +      PA + ++  
Sbjct: 197 VYMEKYLGKPRHIEIQVFGDGEGNAIHLGERD---CSLQRRHQKVWEEANSPA-LNVEQR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            ++ ++   A + +  RG    +FL+   + + +++E+N 
Sbjct: 253 MKIGQICADAMKKLKYRGAGTIEFLY--ENGEFYFIEMNT 290


>gi|71405261|ref|XP_805264.1| 3-methylcrotonyl-CoA carboxylase [Trypanosoma cruzi strain CL
           Brener]
 gi|70868604|gb|EAN83413.1| 3-methylcrotonyl-CoA carboxylase, putative [Trypanosoma cruzi]
          Length = 679

 Score = 94.8 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 83/221 (37%), Gaps = 18/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E     A +    I +      A A    K  SK+++ + GVPV P    
Sbjct: 87  AVHPGYGFLSESPEFAAAVAEAGIEFIGPPAAAMASMGSKSESKRIMEAAGVPVVPGYYG 146

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS----WNHGDQ 165
              + +        I  P +IK + GG   G+ ++K      L L  +      +   D+
Sbjct: 147 EDQSFECLCEEAKKIGFPVLIKAVSGGGGKGMKIVKSVDEFKLMLESAKRESMNFFKDDR 206

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           +++E+YV     + C +  D   +               ++          PA  I  D+
Sbjct: 207 VILERYVTQPRHIECQIFFDKFGNGVFF-----FERDCSVQRRHQKVVEEAPAPHITPDM 261

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              +  ++  A +A+G  G    +F+FD      F++E+N 
Sbjct: 262 RHRIGTVSLRAAKAVGYVGAGTVEFIFDTERNTFFFMEMNT 302


>gi|297180925|gb|ADI17129.1| biotin carboxylase [uncultured gamma proteobacterium HF0070_03O15]
          Length = 446

 Score = 94.8 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 44/217 (20%), Positives = 81/217 (37%), Gaps = 19/217 (8%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVN 114
           +G   E+             +         +  DK+++K++VSS G+P+ P     I  N
Sbjct: 84  YGFLAENAAFAEKCNESGFKFIGPDPKVIEIMGDKIKAKELVSSLGIPIVPGYSGDIQSN 143

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI-----PLDLLQSSSWNHGDQLLIE 169
                    I  P ++K   GG   G+ ++     +             ++   D++ IE
Sbjct: 144 EQIRSIVKEIGYPVIVKATSGGGGKGMRIVNSKDELWDSIVSAQNEAKLAFG-DDKVFIE 202

Query: 170 QYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEV 227
           +Y+     +   V GD       +    S   S + KY         PA  IP +   E+
Sbjct: 203 KYLSKPRHIEIQVFGDGKGKAVHLY---SRDCSLQRKYQ--KILEEAPALNIPKEKLDEI 257

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           Q +   A + I   G    +FL+   + + F++E+N 
Sbjct: 258 QNICVRACKEINYEGAGTLEFLY--ENGQFFFIEMNT 292


>gi|77166873|gb|ABA62411.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|77166877|gb|ABA62413.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|77166879|gb|ABA62414.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|77166881|gb|ABA62415.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|77166897|gb|ABA62423.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|77166899|gb|ABA62424.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|77166905|gb|ABA62427.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|77166915|gb|ABA62432.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|77166919|gb|ABA62434.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|77166925|gb|ABA62437.1| D-alanine-D-alanine ligase [Clostridium perfringens]
          Length = 106

 Score = 94.8 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 28/110 (25%), Positives = 53/110 (48%), Gaps = 4/110 (3%)

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHV 214
               +  +  +++IE+Y+ G E+TC ++    L V  I  PK  F+    KY    +   
Sbjct: 1   AVLEALKYDTEVMIEEYIKGDEITCPIIDGKMLPVLAIK-PKGKFFDIASKYEDGGADEF 59

Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +  K+  D++KEV+++A   ++ + C   +R D L        + LE+N 
Sbjct: 60  I-VKLNEDLHKEVEKMALETYKLLKCDVYARVDMLV--KDNIPYVLEVNT 106


>gi|83414179|dbj|BAE53880.1| D-alanine:D-alanine ligase [Streptococcus anginosus]
          Length = 96

 Score = 94.8 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 31/96 (32%), Positives = 50/96 (52%), Gaps = 2/96 (2%)

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNST 212
               ++ +  ++LIEQ V+  E+  G++G+  +  +     V    FY YE KY   N T
Sbjct: 1   ALELAFKYDSRVLIEQGVNAREIEVGLLGNKGVKSSLPGEVVKDVAFYDYEAKYIDNNIT 60

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
             +PAK+  D+   +++ A  A  AIG  G+SR DF
Sbjct: 61  MDIPAKLSEDVIATMRQYAEKAFHAIGGVGLSRCDF 96


>gi|260796501|ref|XP_002593243.1| hypothetical protein BRAFLDRAFT_124863 [Branchiostoma floridae]
 gi|229278467|gb|EEN49254.1| hypothetical protein BRAFLDRAFT_124863 [Branchiostoma floridae]
          Length = 1039

 Score = 94.8 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 44/260 (16%), Positives = 98/260 (37%), Gaps = 38/260 (14%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+     + +   + +      A      K  SK ++S+ GVP+      
Sbjct: 117 AIHPGYGFLSENTEFADLCQQERVIFIGPPSSAIRDMGIKSTSKHIMSAAGVPIIEGYHG 176

Query: 112 ---LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN----HGD 164
               V R   +++  I  P ++K ++GG   G+ ++  +      L  +        + +
Sbjct: 177 EDQSVERLKAEAEK-IGYPVMVKAVRGGGGKGMRIVMTEAEFEEQLESAKREALKSFNDE 235

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            +L+E++VD    +   V GD   +V  +           ++          PA  +  +
Sbjct: 236 IMLVEKFVDTPRHVEVQVFGDQHGNVVYL-----FERDCSVQRRHQKIIEEAPAPGLTEE 290

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEM 277
           + + +   A  A +A+   G    +F+ D   +  +++E+N       P         EM
Sbjct: 291 VRRRLGEAAVRAAKAVNYVGAGTVEFIMDK-DQNFYFMEMNTRLQVEHP-------VTEM 342

Query: 278 AAYAGYSFRELLLWMVEDAS 297
                 +  +L+ W ++ A+
Sbjct: 343 -----VTHTDLVEWQIKAAA 357


>gi|317123313|ref|YP_004097425.1| carbamoyl-phosphate synthase L chain ATP-binding protein
           [Intrasporangium calvum DSM 43043]
 gi|315587401|gb|ADU46698.1| Carbamoyl-phosphate synthase L chain ATP-binding protein
           [Intrasporangium calvum DSM 43043]
          Length = 1861

 Score = 94.8 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 48/235 (20%), Positives = 84/235 (35%), Gaps = 14/235 (5%)

Query: 39  DRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQ 98
              +   L     D A+ V  G   ED     + E + + +      A     DK+ SK 
Sbjct: 74  HAVLERALRETGADAAW-VGWGFVAEDPAFAELCERIGVIFIGPSAEAMRQLGDKIGSKL 132

Query: 99  VVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154
           +    GVPV P     +       ++   I  P ++K   GG   GI  ++ D  +    
Sbjct: 133 IAEEVGVPVAPWSRGGVDTLEEATEAAARIGYPLMLKATAGGGGRGIRKVESDAELTEAY 192

Query: 155 L----QSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209
                +++       + +E+ V G   +   V+GD       + V          K    
Sbjct: 193 ERTRDEAARAFGSGVVFLEKLVTGARHIEVQVIGDGQGTAWAVGVRDCSVQRRNQKVIEE 252

Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +++ V    +  D   EV+  A     A+G  G    +FL+ P  +   +LE+N 
Sbjct: 253 SASPV----LSADEAAEVRTAAERLAVAVGYAGAGTVEFLYHPAEKFFAFLEVNT 303


>gi|190891557|ref|YP_001978099.1| acetyl-CoA carboxylase, biotin carboxylase [Rhizobium etli CIAT
           652]
 gi|190696836|gb|ACE90921.1| acetyl-CoA carboxylase, biotin carboxylase protein [Rhizobium etli
           CIAT 652]
 gi|327193629|gb|EGE60512.1| acetyl-CoA carboxylase, biotin carboxylase protein [Rhizobium etli
           CNPAF512]
          Length = 449

 Score = 94.8 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 86/220 (39%), Gaps = 18/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     IL+   I +         +  DK+ +K      G+PV P    
Sbjct: 77  AVHPGYGFLSENAKFADILDAHGITFIGPTADHIRIMGDKITAKTTALELGIPVVPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
            +      + +   I  P +IK   GG   G+ V + +  +         ++++    D 
Sbjct: 137 EVKTEEDALRTAAEIGYPVLIKATAGGGGRGMKVARSEADLIEAWSTARTEAAAAFGNDA 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+Y+     +   V GD   +   +        S + ++  +      PA + ++  
Sbjct: 197 VYMEKYLGKPRHIEIQVFGDGEGNAIHLGERD---CSLQRRHQKVWEEANSPA-LNVEQR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            ++ ++   A + +  RG    +FL+   + + +++E+N 
Sbjct: 253 MKIGQICADAMKKLKYRGAGTIEFLY--ENGEFYFIEMNT 290


>gi|189346885|ref|YP_001943414.1| Carbamoyl-phosphate synthase L chain ATP-binding [Chlorobium
           limicola DSM 245]
 gi|189341032|gb|ACD90435.1| Carbamoyl-phosphate synthase L chain ATP-binding [Chlorobium
           limicola DSM 245]
          Length = 485

 Score = 94.8 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 43/225 (19%), Positives = 85/225 (37%), Gaps = 23/225 (10%)

Query: 56  NVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
           N +H  +G   E+     +++   + +            DK+ SK++     VP  P I 
Sbjct: 79  NGVHPGWGFLSENAKFARMVQDSGLIWIGPSPEVIHKMGDKIESKKIAKEARVPTIPGIN 138

Query: 113 VNRFTMD-----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----G 163
               T +      +  +  P +IK   GG   G++ +  D  +   L Q+ S        
Sbjct: 139 SPNTTEEIRRWMQEEDVVFPIIIKASSGGGGKGMVRVGNDTELETALAQARSEAKKSFGN 198

Query: 164 DQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK---I 219
           D++L+E++++ G  +   ++ D   +V  +       Y  E      N   +  A    +
Sbjct: 199 DEILVEKFIEKGKHIEVQIIADQHGNVLHL-------YDRECTLQRRNQKVIEEAPSPSL 251

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +    +   A    + IG       +FL D  + K ++LE+N 
Sbjct: 252 DEETRNSICETAVRLMRTIGYSSAGTVEFLLDAATGKFYFLEVNT 296


>gi|326517844|dbj|BAK03840.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 550

 Score = 94.8 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 43/222 (19%), Positives = 81/222 (36%), Gaps = 20/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E      + E   + +      A     DK  SK+++ + GVP+ P    
Sbjct: 118 AIHPGYGFLSESADFAQLCESEGLTFIGPPPSAIRDMGDKSASKRIMGAAGVPLVPGYHG 177

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP-----LDLLQSSSWNHGD 164
               ++        I  P +IKP  GG   G+ +++                ++S+    
Sbjct: 178 ADQDIELLKLEADKIGYPVLIKPTHGGGGKGMRIVQGPDDFVDSVRSAQREAAASFGIDT 237

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLD 222
            LLIE+Y+     +   V GD   +   +           L+          PA  +  +
Sbjct: 238 -LLIEKYITQPRHIEVQVFGDKHGNAIHLYE-----RDCSLQRRHQKIIEEAPAPNVTTE 291

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
               +   A  A +A+G       +F+ D LS + +++E+N 
Sbjct: 292 FRTHIGEAAVSAAKAVGYYSAGTVEFIVDTLSGEFYFMEMNT 333


>gi|77460171|ref|YP_349678.1| carbamoyl-phosphate synthase L chain, ATP-binding [Pseudomonas
           fluorescens Pf0-1]
 gi|77384174|gb|ABA75687.1| putative acetyl-/propionyl-coenzyme A carboxylase alpha chain
           protein [Pseudomonas fluorescens Pf0-1]
          Length = 653

 Score = 94.8 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 74/220 (33%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       +   + +    + A  L   K +SK  + + GVP       
Sbjct: 79  AIHPGYGFLSENAEFARACKQAGLTFIGPSVEAIELMGSKRQSKIAMLAAGVPCIAGYQG 138

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGD 164
                         I  P +IK   GG   G+ ++   + +P  L  + S     +   +
Sbjct: 139 AEQDDATLTREAERIGYPLMIKASAGGGGRGMRLVHSAEELPAQLRTARSEALNGFGSDE 198

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
            +L +  ++   +   + GD    +  +            K             +  ++ 
Sbjct: 199 LILEQALIEPRHVEVQLFGDHHGQLIYLGERDCSIQRRHQK----VIEEAPCPVMTEELR 254

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +   A  A +A+   G    +FL D    + ++LE+N 
Sbjct: 255 QAMGEAALKAGRAVNYVGAGTVEFLLDT-DGRFYFLEMNT 293


>gi|71404424|ref|XP_804919.1| 3-methylcrotonyl-CoA carboxylase [Trypanosoma cruzi strain CL
           Brener]
 gi|70868121|gb|EAN83068.1| 3-methylcrotonyl-CoA carboxylase, putative [Trypanosoma cruzi]
          Length = 679

 Score = 94.4 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 83/221 (37%), Gaps = 18/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E     A +    I +      A A    K  SK+++ + GVPV P    
Sbjct: 87  AVHPGYGFLSESPEFAAAVAEAGIEFIGPPAAAMASMGSKSESKRIMEAAGVPVVPGYYG 146

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS----WNHGDQ 165
              + +        I  P +IK + GG   G+ ++K      L L  +      +   D+
Sbjct: 147 EDQSFECLCEEAKKIGFPVLIKAVSGGGGKGMKIVKSVDEFKLMLESAKRESMNFFKDDR 206

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           +++E+YV     + C +  D   +               ++          PA  I  D+
Sbjct: 207 VILERYVTQPRHIECQIFFDKFGNGVFF-----FERDCSVQRRHQKVIEEAPAPHITPDM 261

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              +  ++  A +A+G  G    +F+FD      F++E+N 
Sbjct: 262 RHRIGTVSLRAAKAVGYVGAGTVEFIFDTERNTFFFMEMNT 302


>gi|261330789|emb|CBH13774.1| 3-methylcrotonyl-CoA carboxylase, putative [Trypanosoma brucei
           gambiense DAL972]
          Length = 739

 Score = 94.4 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 40/224 (17%), Positives = 89/224 (39%), Gaps = 24/224 (10%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+    + +    + +      A      K  SK+++ + GVP+ P    
Sbjct: 148 AVHPGYGFLSENAEFASAVLAAGLKFVGPPPAAMLSMGSKSESKRIMEAAGVPIVPGYYG 207

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQS----IPLDLLQSSSWNHGDQ 165
                D        I  P +IK + GG   G+ ++ ++      +     ++ ++   D+
Sbjct: 208 EDQNPDRLLHEAKTIGFPVLIKAVSGGGGKGMKIVMEETEFHLMLESAKREAINFFKDDR 267

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFY---SYELKYSSLNSTHVLPAK-IP 220
           +++E+YV     + C +  D        +     F+      ++          PA  + 
Sbjct: 268 VILERYVMHPRHIECQIFFD--------SFDNGVFFFERDCSVQRRHQKVIEEAPAPGLS 319

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +D+ + +  +A  A +A+G  G    +F+FD    + F++E+N 
Sbjct: 320 VDMRRRIGDVALTAARAVGYVGAGTVEFIFDTEKDEFFFMEMNT 363


>gi|253998665|ref|YP_003050728.1| urea carboxylase [Methylovorus sp. SIP3-4]
 gi|253985344|gb|ACT50201.1| urea carboxylase [Methylovorus sp. SIP3-4]
          Length = 1208

 Score = 94.4 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 46/259 (17%), Positives = 88/259 (33%), Gaps = 30/259 (11%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       E   I +             K  ++ +  + GVP+ P   +
Sbjct: 77  AIHPGYGFLSENPGFAEACEAAGIAFIGPTPQQMRDFGLKHTARALAEANGVPLLPGTGL 136

Query: 114 NRFTMDS---QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQL 166
                ++      I  P ++K   GG  +G+ +I  ++ +          S +      L
Sbjct: 137 LADVAEARTHAARIGYPVMLKSTAGGGGIGMRLIWGEEELAEAFASVQRLSRANFKESGL 196

Query: 167 LIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
            +E+YV+    +   + GD +  V  +            K             I   I +
Sbjct: 197 YLEKYVEAARHIEVQIFGDGAGHVVALGERDCSVQRRNQK----VIEETPAPNISEAIRQ 252

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAG--- 282
           ++   A     AIG R     +F++D  S   ++LE+N             +    G   
Sbjct: 253 QLAETAVRLASAIGYRSAGTVEFVYDNASGDFYFLEVNT-----------RLQVEHGVTE 301

Query: 283 -YSFRELLLWMVEDASCLR 300
             S  +L+ WM+  A+  R
Sbjct: 302 LVSGVDLVGWMIRLAAGER 320


>gi|149920385|ref|ZP_01908855.1| D-alanine--D-alanine ligase [Plesiocystis pacifica SIR-1]
 gi|149818827|gb|EDM78269.1| D-alanine--D-alanine ligase [Plesiocystis pacifica SIR-1]
          Length = 285

 Score = 94.4 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 49/248 (19%), Positives = 99/248 (39%), Gaps = 24/248 (9%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D    V HG  G  G +        +P   +   A A + DK+  +Q +S   +PV  S+
Sbjct: 37  DRLLVVAHGPAGGTGKLHRAARSAGLPVLGAEPQAIATAYDKLLCRQRLSFRNLPVPRSV 96

Query: 112 LV---NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168
            +      ++ +   +  P V+KP +G +  G++++   + +              +LL+
Sbjct: 97  ALSADRAASLRALEQLGWPAVLKPRRGAAGAGVMLLGSPRDLDALASLE------PELLV 150

Query: 169 EQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTH---VLPAKIPLDIYK 225
           E+ + G E++  ++  A L + E+            +     S      +P K+     +
Sbjct: 151 ERRMLGREISVVLLDGALLGMAEVT----------REIGPGGSKLRSVTVPPKLDPIARR 200

Query: 226 EVQRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
            +  +A  A + +G   G +  D +  P   +V  LE+   P +   S+   +A   G S
Sbjct: 201 GLANVAVRAARELGLDAGPTCVDLILSPRDNEV-ILEVEPLPPVHRDSLVARVARAEGLS 259

Query: 285 FRELLLWM 292
           + EL   +
Sbjct: 260 YPELFARV 267


>gi|300313753|ref|YP_003777845.1| urea amidolyase [Herbaspirillum seropedicae SmR1]
 gi|300076538|gb|ADJ65937.1| urea amidolyase protein [Herbaspirillum seropedicae SmR1]
          Length = 1207

 Score = 94.4 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 39/234 (16%), Positives = 81/234 (34%), Gaps = 27/234 (11%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---QHLISPPYVIKP 132
            I +         +   K  ++ +    GVP+     +     D+      +  P ++K 
Sbjct: 99  GIAFVGPTPAQLRIFGLKHTARALAREQGVPMLEGTDLLESIDDALAAASRVGYPVMLKS 158

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQLLIEQYVD-GIELTCGVMGDASL 187
             GG  +G+ V + D  +                   + IE+Y++    L   V GD   
Sbjct: 159 TAGGGGIGMRVCRSDAELADAFDSVRRLGQNNFSDAGVFIEKYIERARHLEVQVFGDGRG 218

Query: 188 DVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           +V  + V          K             +P  + + +   A    +A+  R     +
Sbjct: 219 EVIALGVRDCSVQRRNQKVL----EETPAPNLPDGMAEALCAAAIKLAKAVNYRSAGTVE 274

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR----ELLLWMVEDAS 297
           F++D L+ + ++LE+N             +    G + +    +L+ WM+E A+
Sbjct: 275 FVYDSLAGQFYFLEVNT-----------RLQVEHGVTEQVWGVDLVRWMIELAA 317


>gi|225554499|gb|EEH02796.1| 3-methylcrotonyl-CoA carboxylase biotin-containing subunit
           [Ajellomyces capsulatus G186AR]
          Length = 1280

 Score = 94.4 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 55/287 (19%), Positives = 102/287 (35%), Gaps = 44/287 (15%)

Query: 13  EVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNV--------------- 57
           E++L  G+  +      G +V+ +  D       A   P  AFN+               
Sbjct: 613 EIALRVGRTASQH----GIRVTTLYTDPDARAQHALSSP-FAFNLGETSAYLDGDRIIEI 667

Query: 58  --------LHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP 106
                   +H  +G   E+           + +      A     DK RSK+++++ GVP
Sbjct: 668 AQKEGCQGIHPGYGFLSENSAFAQKCTQAGLVFIGPPPKAIEAMGDKSRSKEIMTAAGVP 727

Query: 107 VCPSILVNRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
             P    +  +M+        I  P +IK +KGG   G+ +    ++    L+ + S   
Sbjct: 728 CVPGYHGDNQSMEFLEAEAEKIKFPVLIKAVKGGGGKGMRIASSKETFRDQLISAKSEAM 787

Query: 163 ----GDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
                D +L+E+Y+     +   V  D   +   +            K            
Sbjct: 788 NSFGDDTMLVEKYITTPRHIEVQVFADKHGNCVALGERDCSIQRRHQKIL----EESPAP 843

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +P    K++   A  A  A+G  G    +F+FD  + + F++E+N 
Sbjct: 844 HLPEATRKDIWDKARAAALAVGYEGAGTVEFIFDNDTGEFFFMEMNT 890


>gi|223040860|ref|ZP_03611125.1| acetyl-CoA carboxylase, biotin carboxylase [Campylobacter rectus
           RM3267]
 gi|222877891|gb|EEF13007.1| acetyl-CoA carboxylase, biotin carboxylase [Campylobacter rectus
           RM3267]
          Length = 443

 Score = 94.4 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 84/224 (37%), Gaps = 15/224 (6%)

Query: 50  KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109
           + D  F   +G   E+     I    ++ +    + A AL  DK ++KQ++   GVPV P
Sbjct: 75  EADAIFPG-YGFLSENQNFVEICSHHKLKFIGPSVAAMALMSDKSKAKQMMQRAGVPVIP 133

Query: 110 S----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH--- 162
                +   +   +    I  P ++K   GG   G+ V++ ++ I      + S      
Sbjct: 134 GSDGAVADTKAAKELAKQIGYPVILKAAAGGGGRGMRVVECEEDIEKAFWSAESEAMSAF 193

Query: 163 -GDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
               + +E+Y+ +   +   ++GD+  +V  I            K             + 
Sbjct: 194 GDGTMYMEKYILNPRHIEVQIIGDSHGNVLHIGERDCSMQRRHQK----LIEESPAILLD 249

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            D    +   A  A +AI   G    +FL D      +++E+N 
Sbjct: 250 DDTRARLHETAIRAAKAIDYEGAGTFEFLVDK-DLNFYFIEMNT 292


>gi|299769654|ref|YP_003731680.1| biotin carboxylase [Acinetobacter sp. DR1]
 gi|298699742|gb|ADI90307.1| biotin carboxylase [Acinetobacter sp. DR1]
          Length = 456

 Score = 94.4 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 78/220 (35%), Gaps = 19/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     I+E     +         L  +K+ +   +   GVP  P    
Sbjct: 77  AIHPGYGFLSENAEFAEIVESSGFTFIGPRPEHIRLMGNKVSAIVAMKKAGVPTVPGCDH 136

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD----QSIPLDLLQSSSWNHGDQL 166
            +     +     I  P ++K   GG   G+ ++++     +S+      +  W   D +
Sbjct: 137 AVTIHNALAEAKEIGFPLIVKAASGGGGRGMRIVERVDTLLESVQAAQRDAEMWFGDDTV 196

Query: 167 LIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIY 224
            +E+++     +   V+GD +     +           L+          PA  +P    
Sbjct: 197 YMERFLQKPRHVEVQVLGDGNGHAIHLY-----DRDCSLQRRHQKVLEEAPAPNLPEQAR 251

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            ++      A Q +  RG    +FLF     + F++E+N 
Sbjct: 252 ADILEACVHACQLMQYRGAGTFEFLF--EDGEFFFIEMNT 289


>gi|322824069|gb|EFZ29605.1| 3-methylcrotonyl-CoA carboxylase, putative [Trypanosoma cruzi]
          Length = 679

 Score = 94.4 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 83/221 (37%), Gaps = 18/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E     A +    I +      A A    K  SK+++ + GVPV P    
Sbjct: 87  AVHPGYGFLSESPEFAAAVAEAGIEFIGPPAAAMASMGSKSESKRIMEAAGVPVVPGYYG 146

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS----WNHGDQ 165
              + +        I  P +IK + GG   G+ ++K      L L  +      +   D+
Sbjct: 147 EDQSFECLCEEAKKIGFPVLIKAVSGGGGKGMKIVKSVDEFKLMLESAKRESMNFFKDDR 206

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           +++E+YV     + C +  D   +               ++          PA  I  ++
Sbjct: 207 VILERYVTQPRHIECQIFFDKFGNGVFF-----FERDCSVQRRHQKVIEEAPAPHITPEM 261

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              +  ++  A +A+G  G    +F+FD      F++E+N 
Sbjct: 262 RHRIGTVSLRAAKAVGYVGAGTVEFIFDTERNTFFFMEMNT 302


>gi|293609302|ref|ZP_06691604.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292827754|gb|EFF86117.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|325122570|gb|ADY82093.1| biotin carboxylase (A subunit of acetyl-CoA carboxylase)
           [Acinetobacter calcoaceticus PHEA-2]
          Length = 455

 Score = 94.4 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 78/220 (35%), Gaps = 19/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     I+E     +         L  +K+ +   +   GVP  P    
Sbjct: 77  AIHPGYGFLSENAEFAEIVESSGFTFIGPRPEHIRLMGNKVSAIVAMKKAGVPTVPGCDH 136

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD----QSIPLDLLQSSSWNHGDQL 166
            +     +     I  P ++K   GG   G+ ++++     +S+      +  W   D +
Sbjct: 137 AVTIHNALAEAKEIGFPLIVKAASGGGGRGMRIVERVDTLLESVQAAQRDAEMWFGDDTV 196

Query: 167 LIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIY 224
            +E+++     +   V+GD +     +           L+          PA  +P    
Sbjct: 197 YMERFLQKPRHVEVQVLGDGNGHAIHLY-----DRDCSLQRRHQKVLEEAPAPNLPEQAR 251

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            ++      A Q +  RG    +FLF     + F++E+N 
Sbjct: 252 ADILEACVHACQLMQYRGAGTFEFLF--EDGEFFFIEMNT 289


>gi|119384016|ref|YP_915072.1| acetyl-CoA carboxylase biotin carboxylase subunit [Paracoccus
           denitrificans PD1222]
 gi|119373783|gb|ABL69376.1| acetyl-CoA carboxylase carboxyltransferase subunit alpha
           [Paracoccus denitrificans PD1222]
          Length = 450

 Score = 94.4 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 75/220 (34%), Gaps = 18/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---- 109
            +H  +G   E+     ++E   I +         +  DK+ +K+   S G+PV P    
Sbjct: 77  AVHPGYGFLSENASFVQMVEDHGITFIGPSAEHIRIMGDKITAKETAKSLGIPVVPGSDG 136

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGDQ 165
            +            I  P +IK   GG   G+ V   + ++         ++ +    D+
Sbjct: 137 GVADVAAARQVAAQIGYPVIIKATAGGGGRGMKVAHDEAALETAFRTARAEAKAAFGNDE 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+Y+     +   V GD       +            K             I  +  
Sbjct: 197 VYIEKYLQRPRHIEVQVFGDGRGRAVHLGERDCSLQRRHQKVF----EEAPGPVITAEQR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +  +   A   IG RG    +FLF     + +++E+N 
Sbjct: 253 ARIGGICANAMAKIGYRGAGTIEFLF--EDGEFYFIEMNT 290


>gi|125975129|ref|YP_001039039.1| hypothetical protein Cthe_2647 [Clostridium thermocellum ATCC
           27405]
 gi|256003215|ref|ZP_05428207.1| protein of unknown function DUF201 [Clostridium thermocellum DSM
           2360]
 gi|281418450|ref|ZP_06249469.1| ATP-dependent carboxylate-amine ligase domain protein ATP-grasp
           [Clostridium thermocellum JW20]
 gi|125715354|gb|ABN53846.1| protein of unknown function DUF201 [Clostridium thermocellum ATCC
           27405]
 gi|255992906|gb|EEU02996.1| protein of unknown function DUF201 [Clostridium thermocellum DSM
           2360]
 gi|281407534|gb|EFB37793.1| ATP-dependent carboxylate-amine ligase domain protein ATP-grasp
           [Clostridium thermocellum JW20]
 gi|316939296|gb|ADU73330.1| ATP-dependent carboxylate-amine ligase domain protein ATP-grasp
           [Clostridium thermocellum DSM 1313]
          Length = 308

 Score = 94.0 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 43/209 (20%), Positives = 78/209 (37%), Gaps = 16/209 (7%)

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTM----DSQHLISPPYVIKPLKGGSSLGII 142
           S L+ DK++ K+ ++   +     +  +        ++   IS P V+K         + 
Sbjct: 98  SLLAKDKIKFKKELAKLKIATPEYLSFDSNEDVSIDETVSKISIPCVVKSAVD----AVQ 153

Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSY 202
            +K +    L             +LIE+Y+ G + T  V  D       +      +Y  
Sbjct: 154 PVKANSVAELKEAVEKVRATNTAVLIEEYIKGNDCTVAVESDGK----NVRSLGVTYYCK 209

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
             +Y           K+  D   E+ ++A    + +G  G+ R DF+ D  S KV+ LE+
Sbjct: 210 AKEYKLKGFEGAYSKKMSEDKESEICKIAVQIVEQLGFTGLLRIDFIVDECSEKVYVLEL 269

Query: 263 NV--QPGMTPVSIFPEMAAYAGYSFRELL 289
           N     G    S +P      G    E++
Sbjct: 270 NTVIVTG-YKGSAYP-FFKKQGIDIAEVM 296


>gi|218529225|ref|YP_002420041.1| acetyl-CoA carboxylase, biotin carboxylase [Methylobacterium
           chloromethanicum CM4]
 gi|240137593|ref|YP_002962064.1| acetyl CoA carboxylase, biotin carboxylase subunit
           [Methylobacterium extorquens AM1]
 gi|254560065|ref|YP_003067160.1| acetyl CoA carboxylase, biotin carboxylase subunit
           [Methylobacterium extorquens DM4]
 gi|218521528|gb|ACK82113.1| acetyl-CoA carboxylase, biotin carboxylase [Methylobacterium
           chloromethanicum CM4]
 gi|240007561|gb|ACS38787.1| acetyl CoA carboxylase, biotin carboxylase subunit
           [Methylobacterium extorquens AM1]
 gi|254267343|emb|CAX23175.1| acetyl CoA carboxylase, biotin carboxylase subunit
           [Methylobacterium extorquens DM4]
          Length = 455

 Score = 94.0 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 79/221 (35%), Gaps = 20/221 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     +L    I +         +  DK+ +K+     G+P  P    
Sbjct: 77  AVHPGYGFLSENARFAEVLAHHNIGFIGPKAEHIRIMGDKIEAKRTAKRLGIPCVPGSEG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
            +            I  P ++K   GG   G+ V + +  +   L     ++ +    D 
Sbjct: 137 GVTDPDEAKRVAAEIGYPVLVKAASGGGGRGMKVARSESELEQALDMARTEAKAAFGDDA 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELK-YSSLNSTHVLPAKIPLDI 223
           + +E+Y+     +   ++GD       +A           K +    S    PA +   +
Sbjct: 197 VYLEKYLTKPRHIEVQILGDGKGHAVHLAERDCSLQRRHQKVWEEGGS----PA-LNEAM 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             E+  +   A + +G  G    +FL+     + +++E+N 
Sbjct: 252 RAEIGGICANAMRELGYLGAGTIEFLY--EDGRFYFIEMNT 290


>gi|163850528|ref|YP_001638571.1| acetyl-CoA carboxylase, biotin carboxylase [Methylobacterium
           extorquens PA1]
 gi|163662133|gb|ABY29500.1| acetyl-CoA carboxylase, biotin carboxylase [Methylobacterium
           extorquens PA1]
          Length = 455

 Score = 94.0 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 79/221 (35%), Gaps = 20/221 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     +L    I +         +  DK+ +K+     G+P  P    
Sbjct: 77  AVHPGYGFLSENARFAEVLAHHNIGFIGPKAEHIRIMGDKIEAKRTAKRLGIPCVPGSEG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
            +            I  P ++K   GG   G+ V + +  +   L     ++ +    D 
Sbjct: 137 GVTDPDEAKRVAAEIGYPVLVKAASGGGGRGMKVARSESELEQALDMARTEAKAAFGDDA 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELK-YSSLNSTHVLPAKIPLDI 223
           + +E+Y+     +   ++GD       +A           K +    S    PA +   +
Sbjct: 197 VYLEKYLTKPRHIEVQILGDGKGHAVHLAERDCSLQRRHQKVWEEGGS----PA-LNEAM 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             E+  +   A + +G  G    +FL+     + +++E+N 
Sbjct: 252 RAEIGGICANAMRELGYLGAGTIEFLY--EDGRFYFIEMNT 290


>gi|72393453|ref|XP_847527.1| 3-methylcrotonyl-CoA carboxylase [Trypanosoma brucei TREU927]
 gi|62175114|gb|AAX69263.1| 3-methylcrotonyl-CoA carboxylase, putative [Trypanosoma brucei]
 gi|70803557|gb|AAZ13461.1| 3-methylcrotonyl-CoA carboxylase, putative [Trypanosoma brucei
           brucei strain 927/4 GUTat10.1]
          Length = 678

 Score = 94.0 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 40/224 (17%), Positives = 89/224 (39%), Gaps = 24/224 (10%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+    + +    + +      A      K  SK+++ + GVP+ P    
Sbjct: 87  AVHPGYGFLSENAEFASAVLAAGLKFVGPPPAAMLSMGSKSESKRIMEAAGVPIVPGYYG 146

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQS----IPLDLLQSSSWNHGDQ 165
                D        I  P +IK + GG   G+ ++ ++      +     ++ ++   D+
Sbjct: 147 EDQNPDRLLHEAKTIGFPVLIKAVSGGGGKGMKIVMEETEFHLMLESAKREAINFFKDDR 206

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFY---SYELKYSSLNSTHVLPAK-IP 220
           +++E+YV     + C +  D        +     F+      ++          PA  + 
Sbjct: 207 VILERYVMHPRHIECQIFFD--------SFGNGVFFFERDCSVQRRHQKVIEEAPAPGLS 258

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +D+ + +  +A  A +A+G  G    +F+FD    + F++E+N 
Sbjct: 259 VDMRRRIGDVALTAARAVGYVGAGTVEFIFDTEKDEFFFMEMNT 302


>gi|209523217|ref|ZP_03271773.1| acetyl-CoA carboxylase, biotin carboxylase [Arthrospira maxima
           CS-328]
 gi|209496368|gb|EDZ96667.1| acetyl-CoA carboxylase, biotin carboxylase [Arthrospira maxima
           CS-328]
          Length = 453

 Score = 94.0 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 79/220 (35%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     I    +I +      A     DK  +K+ +   GVP  P    
Sbjct: 78  AIHPGYGFLAENARFAEICADHDIAFIGPTPEAIRSMGDKSTAKETMQRFGVPTIPGSEG 137

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSWNHGDQ 165
            +  ++        I  P +IK   GG   G+ +++  + +P        ++ +      
Sbjct: 138 LVTNDKAAQKIAQKIGYPVIIKATAGGGGRGMRLVRSAEELPKLFSAAQGEAEAAFGNPG 197

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           L IE++++    +   ++ D   +V  +            K             +  ++ 
Sbjct: 198 LYIEKFIECPRHIEFQILADGFGNVIHLGERDCSIQRRHQKLL----EEAPSPALNPELR 253

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +++   A  A  +I   G    +FL D    K +++E+N 
Sbjct: 254 RKMGEAAVKAAASINYTGAGTVEFLLDRH-GKFYFMEMNT 292


>gi|319783251|ref|YP_004142727.1| acetyl-CoA carboxylase, biotin carboxylase [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
 gi|317169139|gb|ADV12677.1| acetyl-CoA carboxylase, biotin carboxylase [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
          Length = 447

 Score = 94.0 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 80/220 (36%), Gaps = 18/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     IL    I +         +  DK+ +K+     G+PV P    
Sbjct: 77  AVHPGYGFLSENAKFADILAAHNITFIGPSGDHIRIMGDKIEAKRTAKRLGIPVVPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
            +   +        I  P +IK   GG   G+ V   +  + + L     ++ +    D 
Sbjct: 137 AVTDQKEARRIAAEIGYPVIIKASAGGGGRGMKVALTEADLEVALQTASTEAGAAFGDDA 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+Y++    +   V GD                S + ++  +      PA +  +  
Sbjct: 197 VYIEKYLEKPRHIEVQVFGDGFGRGVHFGERD---CSLQRRHQKVWEEAPSPA-LNAEER 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +  +   A   +G  G    +FL+   + + +++E+N 
Sbjct: 253 ARIGGICAKAIADLGYSGAGTIEFLY--ENGEFYFIEMNT 290


>gi|284051849|ref|ZP_06382059.1| acetyl-CoA carboxylase biotin carboxylase subunit [Arthrospira
           platensis str. Paraca]
 gi|291571309|dbj|BAI93581.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Arthrospira
           platensis NIES-39]
          Length = 453

 Score = 94.0 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 79/220 (35%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     I    +I +      A     DK  +K+ +   GVP  P    
Sbjct: 78  AIHPGYGFLAENARFAEICADHDIAFIGPTPEAIRSMGDKSTAKETMQRFGVPTIPGSEG 137

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSWNHGDQ 165
            +  ++        I  P +IK   GG   G+ +++  + +P        ++ +      
Sbjct: 138 LVTNDKAAQKIAQKIGYPVIIKATAGGGGRGMRLVRSAEELPKLFSAAQGEAEAAFGNPG 197

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           L IE++++    +   ++ D   +V  +            K             +  ++ 
Sbjct: 198 LYIEKFIECPRHIEFQILADGFGNVIHLGERDCSIQRRHQKLL----EEAPSPALNPELR 253

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +++   A  A  +I   G    +FL D    K +++E+N 
Sbjct: 254 RKMGEAAVKAAASINYTGAGTVEFLLDRH-GKFYFMEMNT 292


>gi|212638030|ref|YP_002314550.1| acetyl-CoA carboxylase biotin carboxylase subunit [Anoxybacillus
           flavithermus WK1]
 gi|212559510|gb|ACJ32565.1| Biotin carboxylase [Anoxybacillus flavithermus WK1]
          Length = 470

 Score = 94.0 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 81/220 (36%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       E   I +        A    K+ ++Q ++  GVP+ P I  
Sbjct: 94  AIHPGYGLLSENATFARRCEEEGIVFIGPQPDVIAKMGSKIEARQTMAEAGVPIVPGISF 153

Query: 114 NRFTMDSQHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
               +D        I  P ++K   GG  +G+ ++  ++ +         +++S+     
Sbjct: 154 PLADVDEAANVANGIGYPVMLKASAGGGGIGMQLVYDEEQLRKAFEGNQSRAASFFGDGA 213

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+Y+D    +   ++ DA  +   +   +        K             +  +  
Sbjct: 214 MYVEKYIDNPRHIEIQLLADAHGNCVYLWERECSIQRRHQK----VVEEAPSPFLDEETR 269

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +++   A  A + IG       +FL D      ++LE+N 
Sbjct: 270 RKMGEAAVRAAKHIGYTNAGTIEFLVDEQKN-FYFLEMNT 308


>gi|260461869|ref|ZP_05810115.1| Carbamoyl-phosphate synthase L chain ATP-binding [Mesorhizobium
           opportunistum WSM2075]
 gi|319785392|ref|YP_004144868.1| carbamoyl-phosphate synthase L chain ATP-binding protein
           [Mesorhizobium ciceri biovar biserrulae WSM1271]
 gi|259032510|gb|EEW33775.1| Carbamoyl-phosphate synthase L chain ATP-binding [Mesorhizobium
           opportunistum WSM2075]
 gi|317171280|gb|ADV14818.1| Carbamoyl-phosphate synthase L chain ATP-binding protein
           [Mesorhizobium ciceri biovar biserrulae WSM1271]
          Length = 428

 Score = 94.0 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 41/214 (19%), Positives = 84/214 (39%), Gaps = 21/214 (9%)

Query: 60  GNFGEDGLVQA----ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV-N 114
           G  G+D  + A    +    ++P       +     +K   +Q+++  GVP+    L  N
Sbjct: 79  GFAGDDESIYATVGQLCRYFDLP--GPNPASIEGCCNKFTQRQLLAEAGVPMPSYRLAAN 136

Query: 115 RFTMDSQ-HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL--LQSSSWNHGDQLLIEQY 171
              ++S    I  P VIKP  G  S+G+ + +    +      L S       ++L+E++
Sbjct: 137 AAEVESAVAQIGLPVVIKPALGSGSIGVRLCRNVDDLAEHATYLLSGRHRSSPRILVEEF 196

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
             G   +  +MG+  + +          + +          ++ PA +  + YK +  L+
Sbjct: 197 AQGPHYSADIMGNEVIGIEAAEFGPPPHFIFR--------EYIHPAPLTSEEYKCIADLS 248

Query: 232 FLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
               +A+G   G S  +F +         +E+N 
Sbjct: 249 LSCLRALGLGWGPSFVEFRWTKRG--PVVIEVNP 280


>gi|188580296|ref|YP_001923741.1| acetyl-CoA carboxylase, biotin carboxylase [Methylobacterium populi
           BJ001]
 gi|179343794|gb|ACB79206.1| acetyl-CoA carboxylase, biotin carboxylase [Methylobacterium populi
           BJ001]
          Length = 455

 Score = 94.0 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 80/221 (36%), Gaps = 20/221 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     +L    I +         +  DK+ +K+     G+P  P    
Sbjct: 77  AVHPGYGFLSENARFAEVLAHHNIGFIGPKAEHIRVMGDKIEAKRTAKRLGIPCVPGSEG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
            +            I  P ++K   GG   G+ V + +  +   L     ++ +    D 
Sbjct: 137 GVSDPDEAKRVAAEIGYPVLVKAASGGGGRGMKVARSEAELEQALDMARTEAKAAFGDDA 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELK-YSSLNSTHVLPAKIPLDI 223
           + +E+Y+     +   ++GD       +A           K +    S    PA +  ++
Sbjct: 197 VYLEKYLTKPRHIEVQILGDGKGHAVHLAERDCSLQRRHQKVWEEGGS----PA-LNAEM 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             E+  +   A + +G  G    +FL+     + +++E+N 
Sbjct: 252 RAEIGGICANAMRELGYLGAGTIEFLY--EDGRFYFIEMNT 290


>gi|186685989|ref|YP_001869185.1| acetyl-CoA carboxylase biotin carboxylase subunit [Nostoc
           punctiforme PCC 73102]
 gi|186468441|gb|ACC84242.1| acetyl-CoA carboxylase, biotin carboxylase [Nostoc punctiforme PCC
           73102]
          Length = 447

 Score = 94.0 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 41/220 (18%), Positives = 81/220 (36%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     I     I +      A  L  DK  +K+ +   GVP  P    
Sbjct: 78  AIHPGYGFLAENARFAEICADHHIAFIGPTPEAIKLMGDKSTAKETMQKAGVPTVPGSEG 137

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS----IPLDLLQSSSWNHGDQ 165
            +      +     I  P +IK   GG   G+ +++ +            ++ +      
Sbjct: 138 LVESEEEGLKFAKEIGYPVMIKATAGGGGRGMRLVRSEDEFVKLFLAAQGEAGAAFGNSG 197

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE++++    +   ++ D   +V  +            K    +     PA +  D+ 
Sbjct: 198 VYIEKFIERPRHIEFQILADNYGNVIHLGERDCSIQRRNQKLLEESP---SPA-LDEDLR 253

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +++ + A  A Q I   G    +FL D  S K +++E+N 
Sbjct: 254 EKMGQAAVKAAQFINYSGAGTIEFLLD-RSGKFYFMEMNT 292


>gi|149194767|ref|ZP_01871862.1| acetyl-CoA carboxylase subunit A [Caminibacter mediatlanticus TB-2]
 gi|149135190|gb|EDM23671.1| acetyl-CoA carboxylase subunit A [Caminibacter mediatlanticus TB-2]
          Length = 447

 Score = 94.0 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 85/224 (37%), Gaps = 15/224 (6%)

Query: 50  KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109
           + D  F   +G   E+     + +   I +    +    L  DK ++K+V+ S GVPV P
Sbjct: 76  ECDAIFPG-YGFLSENQTFVEVCKAHNISFIGPSLEVMELMADKSKAKEVMKSAGVPVIP 134

Query: 110 S----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH--- 162
                I            I  P ++K   GG   G+ V++ +  +    L +SS      
Sbjct: 135 GSEGAIKDIEEAKKVAREIGYPVILKAASGGGGRGMRVVEDESYLENAFLAASSEAESAF 194

Query: 163 -GDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
               + +E+Y++    +   ++GD   +V  +            K    +   +    + 
Sbjct: 195 GDATIYMEKYIEKPRHVEVQILGDKHGNVIHLGERDCSLQRRHQKLIEESPATI----LD 250

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +  K++   A  A +AIG       +FL D      +++E+N 
Sbjct: 251 EETRKKLHETAVKAAKAIGYYSAGTIEFLVDK-DLNFYFMEMNT 293


>gi|124022033|ref|YP_001016340.1| acetyl-CoA carboxylase biotin carboxylase subunit [Prochlorococcus
           marinus str. MIT 9303]
 gi|123962319|gb|ABM77075.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Prochlorococcus
           marinus str. MIT 9303]
          Length = 448

 Score = 94.0 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 74/220 (33%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     I     I +      A     DK  +K  +   GVP  P    
Sbjct: 78  AIHPGYGFLAENDRFAEICRDHGITFVGPSPHAIRSMGDKSTAKATMQQVGVPTVPGSEG 137

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSWNHGDQ 165
            +       +    +  P +IK   GG   G+ ++     +         ++ +      
Sbjct: 138 LLASPEEAAELAKGMGYPVMIKATAGGGGRGMRLVTTPDQLENLFKAAQGEAEAAFGNPG 197

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           L +E+++D    +   ++ D   +V  +            K    +     PA +  ++ 
Sbjct: 198 LYMEKFIDRPRHVEVQILSDRHGNVIHLGERDCSIQRRHQKLLEESP---SPA-LTPELR 253

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +   A  A ++I   G    +FL D      +++E+N 
Sbjct: 254 LRMGEAAVAAARSINYEGAGTVEFLLDRK-GDFYFMEMNT 292


>gi|83414175|dbj|BAE53878.1| D-alanine:D-alanine ligase [Streptococcus anginosus]
 gi|83414185|dbj|BAE53883.1| D-alanine:D-alanine ligase [Streptococcus anginosus]
 gi|83414189|dbj|BAE53885.1| D-alanine:D-alanine ligase [Streptococcus anginosus]
          Length = 96

 Score = 94.0 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 30/96 (31%), Positives = 49/96 (51%), Gaps = 2/96 (2%)

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNST 212
               ++ +  ++LIEQ V+  E+  G++G+  +  +     V    FY YE KY     T
Sbjct: 1   ALELAFKYDSRVLIEQGVNAREIEVGLLGNKGVKSSLPGEVVKDVAFYDYEAKYIDNKIT 60

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
             +PAK+  D+   +++ A  A  AIG  G+SR DF
Sbjct: 61  MDIPAKLSEDVIATMRQYAEKAFHAIGGVGLSRCDF 96


>gi|332976192|gb|EGK13056.1| acetyl-CoA carboxylase, biotin carboxylase [Desmospora sp. 8437]
          Length = 448

 Score = 93.6 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 40/219 (18%), Positives = 81/219 (36%), Gaps = 16/219 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      +E   + +  S     A   DK+ +++ +   G+PV P    
Sbjct: 78  AIHPGYGLLSENAEFAGRVEEAGLIFVGSSPEVIARMGDKVTARRHMEEAGIPVVPGSDG 137

Query: 114 NRFTMDS---QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQL 166
            R   ++      I  P ++K   GG  +G+ V+  +  +         ++ ++     L
Sbjct: 138 IRDLAEASREAARIGYPVMLKASAGGGGIGMEVLHSEADLEKAFTSARGRAQAYFGDGTL 197

Query: 167 LIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
            +E++++    +   V  D       +   +        K             I  +  +
Sbjct: 198 FMERFIESPRHVEVQVFADGKGRTLHLFERECSVQRRNQK----VVEESPSPSIRPETRE 253

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + R A  A +A+G  G    +FL DP     F+LE+N 
Sbjct: 254 ALCRAAVQAAKAVGYTGAGTVEFLVDP-GEDFFFLEMNT 291


>gi|262279409|ref|ZP_06057194.1| biotin carboxylase [Acinetobacter calcoaceticus RUH2202]
 gi|262259760|gb|EEY78493.1| biotin carboxylase [Acinetobacter calcoaceticus RUH2202]
          Length = 456

 Score = 93.6 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 78/220 (35%), Gaps = 19/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     I+E     +         L  +K+ +   +   GVP  P    
Sbjct: 77  AIHPGYGFLSENAEFAEIVESSGFTFIGPRPEHIRLMGNKVSAIVAMKKAGVPTVPGCDH 136

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD----QSIPLDLLQSSSWNHGDQL 166
            +     +     I  P ++K   GG   G+ ++++     +S+      +  W   D +
Sbjct: 137 AVTIHNALAEAKEIGFPLIVKAASGGGGRGMRIVERVDTLLESVQAAQRDAEMWFGDDTV 196

Query: 167 LIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIY 224
            +E+++     +   ++GD +     +           L+          PA  +P    
Sbjct: 197 YMERFLQKPRHVEVQILGDGNGHAIHLY-----DRDCSLQRRHQKVLEEAPAPNLPEQAR 251

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            ++      A Q +  RG    +FLF     + F++E+N 
Sbjct: 252 ADILEACVHACQLMQYRGAGTFEFLF--EDGEFFFIEMNT 289


>gi|108862934|gb|ABA99832.2| Methylcrotonoyl-CoA carboxylase alpha chain, mitochondrial
           precursor, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 674

 Score = 93.6 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 85/222 (38%), Gaps = 20/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E      + +   + +      A     DK  SK+++ + GVP+ P    
Sbjct: 114 AIHPGYGFLSESADFAQLCKAEGLTFIGPPPSAIRDMGDKSASKRIMGAAGVPLVPGYHG 173

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQS-----IPLDLLQSSSWNHGD 164
               ++      + I  P +IKP  GG   G+ ++++ +      +      ++S+    
Sbjct: 174 AEQDIELLKLEANKIGYPVLIKPTHGGGGKGMRIVQRPEDFVDSVLSAQREAAASFGINT 233

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLD 222
            LL+E+Y+     +   + GD   +V  +           L+          PA  +   
Sbjct: 234 -LLVEKYITQPRHIEVQIFGDQHGNVIHLYE-----RDCSLQRRHQKIIEEAPAPNVTAQ 287

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
               +   A  A +A+G       +F+ D LS + +++E+N 
Sbjct: 288 FRSHIGEAAVSAAKAVGYYSAGTVEFIVDTLSGEFYFMEMNT 329


>gi|33863855|ref|NP_895415.1| acetyl-CoA carboxylase biotin carboxylase subunit [Prochlorococcus
           marinus str. MIT 9313]
 gi|33635438|emb|CAE21763.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Prochlorococcus
           marinus str. MIT 9313]
          Length = 448

 Score = 93.6 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 74/220 (33%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     I     I +      A     DK  +K  +   GVP  P    
Sbjct: 78  AIHPGYGFLAENDRFAEICRDHGITFVGPSPHAIRSMGDKSTAKATMQQVGVPTVPGSEG 137

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSWNHGDQ 165
            +       +    +  P +IK   GG   G+ ++     +         ++ +      
Sbjct: 138 LLASPEAAAELAKGMGYPVMIKATAGGGGRGMRLVTTPDQLENLFKAAQGEAEAAFGNPG 197

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           L +E+++D    +   ++ D   +V  +            K    +     PA +  ++ 
Sbjct: 198 LYMEKFIDRPRHVEVQILSDRHGNVIHLGERDCSIQRRHQKLLEESP---SPA-LTPELR 253

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +   A  A ++I   G    +FL D      +++E+N 
Sbjct: 254 LRMGEAAVAAARSINYEGAGTVEFLLDRK-GDFYFMEMNT 292


>gi|50084889|ref|YP_046399.1| biotin carboxylase (A subunit of acetyl-CoA carboxylase)
           [Acinetobacter sp. ADP1]
 gi|49530865|emb|CAG68577.1| biotin carboxylase (A subunit of acetyl-CoA carboxylase)
           [Acinetobacter sp. ADP1]
          Length = 462

 Score = 93.6 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 78/220 (35%), Gaps = 19/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     I+E     +         L  +K+ +   +   GVP  P    
Sbjct: 77  AIHPGYGFLSENAEFAEIVETSGFIFIGPRPEHIRLMGNKVSAIIAMKKAGVPTVPGCDH 136

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD----QSIPLDLLQSSSWNHGDQL 166
            +     +     I  P ++K   GG   G+ ++++     +S+      +  W   D +
Sbjct: 137 AVTIHNALAEAKEIGFPLIVKAASGGGGRGMRIVERVDTLLESVQAAQRDAEMWFGDDTV 196

Query: 167 LIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIY 224
            +E+++     +   V+GD +     +           L+          PA  +P    
Sbjct: 197 YMERFLQKPRHIEVQVLGDGNGHAVHLY-----DRDCSLQRRHQKVLEEAPAPNLPEQAR 251

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            ++      A + +  RG    +FLF     + F++E+N 
Sbjct: 252 ADILEACVNACKLMQYRGAGTFEFLF--EDGEFFFIEMNT 289


>gi|77166883|gb|ABA62416.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|313192181|emb|CBX19950.1| D alanine-D alanine ligase [Clostridium perfringens]
          Length = 106

 Score = 93.6 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 27/110 (24%), Positives = 53/110 (48%), Gaps = 4/110 (3%)

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHV 214
               +  +  +++IE+Y+ G E+TC ++    L V  I  PK  F+    KY    +   
Sbjct: 1   AVLEALKYDTEVMIEEYIKGDEITCPIIDGKMLPVLAIK-PKGKFFDIASKYEDGGADEF 59

Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +  K+  +++KEV+++A   ++ + C   +R D L        + LE+N 
Sbjct: 60  I-VKLNENLHKEVEKMALETYKLLKCDVYARVDMLV--KDNIPYVLEVNT 106


>gi|57528264|ref|NP_001009653.1| methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial
           [Rattus norvegicus]
 gi|81882966|sp|Q5I0C3|MCCA_RAT RecName: Full=Methylcrotonoyl-CoA carboxylase subunit alpha,
           mitochondrial; Short=MCCase subunit alpha; AltName:
           Full=3-methylcrotonyl-CoA carboxylase 1; AltName:
           Full=3-methylcrotonyl-CoA carboxylase biotin-containing
           subunit; AltName: Full=3-methylcrotonyl-CoA:carbon
           dioxide ligase subunit alpha; Flags: Precursor
 gi|56971894|gb|AAH88473.1| Methylcrotonoyl-Coenzyme A carboxylase 1 (alpha) [Rattus
           norvegicus]
          Length = 715

 Score = 93.6 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 82/221 (37%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       +   I +      A      K  SK ++++ GVPV      
Sbjct: 120 AIHPGYGFLSENMEFAEFCKQEGIIFIGPPSTAIRDMGIKSTSKSIMAAAGVPVVEGYHG 179

Query: 114 NRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
           N  + +        I  P +IK ++GG   G+ +I+ ++     L  +          D 
Sbjct: 180 NDQSDECLKEHAGKIGYPVMIKAIRGGGGKGMRIIRSEKEFQEQLESARREAKKSFNDDA 239

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           +LIE++VD    +   V GD   +   +           ++          PA  I  ++
Sbjct: 240 MLIEKFVDTPRHVEVQVFGDHHGNAVYL-----FERDCSVQRRHQKIIEEAPAPGIDPEV 294

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +   A  A +A+   G    +F+ D      +++E+N 
Sbjct: 295 RRRLGEAAVRAAKAVNYVGAGTVEFIMDSKHN-FYFMEMNT 334


>gi|115489478|ref|NP_001067226.1| Os12g0605800 [Oryza sativa Japonica Group]
 gi|110810425|sp|Q2QMG2|MCCA_ORYSJ RecName: Full=Methylcrotonoyl-CoA carboxylase subunit alpha,
           mitochondrial; Short=MCCase subunit alpha; AltName:
           Full=3-methylcrotonyl-CoA carboxylase 1; AltName:
           Full=3-methylcrotonyl-CoA:carbon dioxide ligase subunit
           alpha; Flags: Precursor
 gi|108862933|gb|ABA99831.2| Methylcrotonoyl-CoA carboxylase alpha chain, mitochondrial
           precursor, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113649733|dbj|BAF30245.1| Os12g0605800 [Oryza sativa Japonica Group]
 gi|215768297|dbj|BAH00526.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222617434|gb|EEE53566.1| hypothetical protein OsJ_36794 [Oryza sativa Japonica Group]
          Length = 737

 Score = 93.6 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 85/222 (38%), Gaps = 20/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E      + +   + +      A     DK  SK+++ + GVP+ P    
Sbjct: 114 AIHPGYGFLSESADFAQLCKAEGLTFIGPPPSAIRDMGDKSASKRIMGAAGVPLVPGYHG 173

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQS-----IPLDLLQSSSWNHGD 164
               ++      + I  P +IKP  GG   G+ ++++ +      +      ++S+    
Sbjct: 174 AEQDIELLKLEANKIGYPVLIKPTHGGGGKGMRIVQRPEDFVDSVLSAQREAAASFGINT 233

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLD 222
            LL+E+Y+     +   + GD   +V  +           L+          PA  +   
Sbjct: 234 -LLVEKYITQPRHIEVQIFGDQHGNVIHLYE-----RDCSLQRRHQKIIEEAPAPNVTAQ 287

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
               +   A  A +A+G       +F+ D LS + +++E+N 
Sbjct: 288 FRSHIGEAAVSAAKAVGYYSAGTVEFIVDTLSGEFYFMEMNT 329


>gi|282898689|ref|ZP_06306677.1| Acetyl-CoA carboxylase, biotin carboxylase [Cylindrospermopsis
           raciborskii CS-505]
 gi|281196557|gb|EFA71466.1| Acetyl-CoA carboxylase, biotin carboxylase [Cylindrospermopsis
           raciborskii CS-505]
          Length = 448

 Score = 93.6 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 77/220 (35%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     I    +I +      A  L  DK  +K+ +   GVP  P    
Sbjct: 78  AIHPGYGFLAENARFAEICADHQIAFIGPTPEAIRLMGDKSTAKETMQKAGVPTVPGSDG 137

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS----IPLDLLQSSSWNHGDQ 165
            +      +   H I  P +IK   GG   G+ +++ +            ++ +      
Sbjct: 138 LVETETQGLAIAHQIGYPVMIKATAGGGGRGMRLVRSEDEFIKLFHAAQGEAGAAFGNAG 197

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE++++    +   ++ D   +V  +            K             +  D+ 
Sbjct: 198 VYIEKFIERPRHIEFQILADNYGNVIHLGERDCSIQRRNQKLL----EEAPSPALDEDLR 253

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +++   A  A Q I   G    +FL D      +++E+N 
Sbjct: 254 EKMGHAAVKAAQFINYTGAGTIEFLLDKS-GHFYFMEMNT 292


>gi|307243579|ref|ZP_07525725.1| pyruvate carboxylase [Peptostreptococcus stomatis DSM 17678]
 gi|306493046|gb|EFM65053.1| pyruvate carboxylase [Peptostreptococcus stomatis DSM 17678]
          Length = 1146

 Score = 93.6 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 42/243 (17%), Positives = 90/243 (37%), Gaps = 24/243 (9%)

Query: 35  QIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSM 91
            +D+D  +  +    K D     +H  +G   E+       E   I +            
Sbjct: 64  YLDID-GIISLAKRKKVD----AIHPGYGFLSENAEFARKCEENGITFIGPDSSIMEKLG 118

Query: 92  DKMRSKQVVSSCGVPVCPSILVN----RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147
           DK+ SK V     VP  P +       +        I  P ++K   GG   G+ +++++
Sbjct: 119 DKINSKIVAHEANVPTIPGVEKALKTVKEAKQVAEKIGYPVMVKASNGGGGRGMRIVRRE 178

Query: 148 QSIPLDLLQSSSWNHG----DQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSY 202
           + + ++   + S +      D + IE+Y+ D   +   V+GD   ++  +          
Sbjct: 179 EDLEIEFENARSESRKAFGEDLIFIEKYIEDPKHIEVQVLGDKYGNIVHLYE-----RDC 233

Query: 203 ELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
            ++          PA  +  D+ + + + A    + +G       +FL D  +   +++E
Sbjct: 234 SVQRRHQKIIEFAPAFSLDPDVRERICQDAVRIAKHVGYTNAGTLEFLVDK-NGDYYFIE 292

Query: 262 INV 264
           +N 
Sbjct: 293 MNT 295


>gi|95928751|ref|ZP_01311497.1| acetyl-CoA carboxylase, biotin carboxylase [Desulfuromonas
           acetoxidans DSM 684]
 gi|95135096|gb|EAT16749.1| acetyl-CoA carboxylase, biotin carboxylase [Desulfuromonas
           acetoxidans DSM 684]
          Length = 445

 Score = 93.6 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 41/220 (18%), Positives = 80/220 (36%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     I     + +         L  DK+ ++Q V+S GVP+ P    
Sbjct: 77  AIHPGYGFLSENAEFADICNNCGLTFIGPTAENMRLMGDKISARQTVTSAGVPILPGTKD 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
            +      +     I  P +IK   GG   G+ ++    S+P     + S         +
Sbjct: 137 GVPNVEEAVRIAGEIGYPVIIKATAGGGGRGMKIVHSPASLPNAFAAARSEAQSGFGNPE 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+Y +    +   ++ D    V  +            K           A +P D+ 
Sbjct: 197 VYIEKYCERPRHVEIQILADKHGHVIHLGERDCSIQRRHQK----LIEEAPCAILPDDVR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +   A  A +A+    +   +FL D  +   +++E+N 
Sbjct: 253 QRMGDCAVAAAKAVNYSSVGTIEFLLDA-NNDFYFMEMNT 291


>gi|256392939|ref|YP_003114503.1| carbamoyl-phosphate synthase L chain ATP- binding [Catenulispora
           acidiphila DSM 44928]
 gi|256359165|gb|ACU72662.1| Carbamoyl-phosphate synthase L chain ATP- binding [Catenulispora
           acidiphila DSM 44928]
          Length = 662

 Score = 93.6 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 44/220 (20%), Positives = 82/220 (37%), Gaps = 18/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+  + A +    + +   G    A   DK R++ +++  GVPV P    
Sbjct: 77  AVHPGYGFLSENPRLAAAVAQAGLVFVGPGAETIAAMGDKARARTLMAQAGVPVLPGSSQ 136

Query: 114 NRFTM----DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
              ++         I  P ++KP+ GG   G+ V+    ++P  + Q+           +
Sbjct: 137 ATDSLAVLAQDAERIGYPVILKPVAGGGGKGMAVVAAADALPGAVEQAVRIGRSAFGDGR 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           LL+E+YV     +   V GD    V  +   +        K             +   + 
Sbjct: 197 LLVERYVARPRHIEVQVFGDGHGKVVHLHERECSLQRRHQKII----EEAPAVGLAAGVR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +   A    +AIG       +F+ D      F+LE+N 
Sbjct: 253 EALLAAAVRGAEAIGYVNAGTFEFILDGED--FFFLEVNT 290


>gi|34557456|ref|NP_907271.1| biotin carboxylase [Wolinella succinogenes DSM 1740]
 gi|34483172|emb|CAE10171.1| BIOTIN CARBOXYLASE (ACCC) [Wolinella succinogenes]
          Length = 448

 Score = 93.6 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 41/226 (18%), Positives = 87/226 (38%), Gaps = 17/226 (7%)

Query: 49  LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
            + D  F   +G   E+     I +   I +         L  DK  +K+V+   GVPV 
Sbjct: 77  FEADAIFPG-YGFLSENQNFVEICQHHGIEFIGPTPEVMVLMSDKSMAKEVMKKAGVPVI 135

Query: 109 PS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSW 160
           P     +       +    I  P ++K   GG   G+ +++K++++         ++ S 
Sbjct: 136 PGSEGALSGYEEAKEEAKKIGYPVILKASAGGGGRGMRIVEKEENLINSYLAAESEALSA 195

Query: 161 NHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-K 218
                + +E+++D    +   V+ D   +   +           L+          PA  
Sbjct: 196 FGDGTIYMEKFIDKPKHIEVQVLADKHGNAIHVGE-----RDCSLQRRHQKLIEESPALA 250

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +  +  +++ + A  A +AI   G    +FL D  ++  +++E+N 
Sbjct: 251 LLPETREKLLKTAIEATKAIKYVGAGTFEFLLD-SNQNFYFMEMNT 295


>gi|148240464|ref|YP_001225851.1| acetyl-CoA carboxylase biotin carboxylase subunit [Synechococcus
           sp. WH 7803]
 gi|147849003|emb|CAK24554.1| Biotin carboxylase (A subunit of acetyl-CoA carboxylase)
           [Synechococcus sp. WH 7803]
          Length = 447

 Score = 93.6 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 73/220 (33%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     I     I +      A     DK  +K  + + GVP  P    
Sbjct: 78  AIHPGYGFLAENDRFAEICRDHGITFVGPSPHAIRSMGDKSTAKTTMQAVGVPTVPGSEG 137

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSWNHGDQ 165
            +       D    +  P +IK   GG   G+ +++    +         ++ +      
Sbjct: 138 LLSGPDEAADLALAMGYPVMIKATAGGGGRGMRLVQSADQLETLYKAAQGEAEAAFGNPG 197

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           L +E+++D    +   V+ D   +V  +            K             +  D+ 
Sbjct: 198 LYMEKFIDKPRHVEVQVLADRHGNVVHLGERDCSIQRRHQKLL----EEAPSPALDKDLR 253

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +   A  A ++I   G    +FL D      +++E+N 
Sbjct: 254 MRMGEAAVAAARSINYEGAGTVEFLLDRSGG-FYFMEMNT 292


>gi|332876887|ref|ZP_08444641.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Capnocytophaga
           sp. oral taxon 329 str. F0087]
 gi|332685170|gb|EGJ58013.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Capnocytophaga
           sp. oral taxon 329 str. F0087]
          Length = 450

 Score = 93.6 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 74/220 (33%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     I     I +  +         DK  +K  +   GVP  P    
Sbjct: 77  AIHPGYGFLSENAKFSKICAEHGIKFIGASPEMIERMGDKASAKATMKEAGVPTVPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS-----SSWNHGD 164
            +            I  P ++K   GG   G+  + K++ +   L  +     +++ +  
Sbjct: 137 LVQSLEHAKKIAAEIGYPVMLKATAGGGGRGMRDVWKEEDLEKALDSAMQEAGAAFGNDA 196

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             + +  VD   +   ++GD       ++           K     +       +  D+ 
Sbjct: 197 MYMEKLIVDPRHIEIQIVGDQYGKACHLSERDCSIQRRHQK----LTEETPSPFMTEDLR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K +   A  A + I   G    +FL D   R  +++E+N 
Sbjct: 253 KRMGEAAVKAAEYIKYEGAGTVEFLVDK-DRNFYFMEMNT 291


>gi|218187207|gb|EEC69634.1| hypothetical protein OsI_39029 [Oryza sativa Indica Group]
          Length = 740

 Score = 93.6 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 84/222 (37%), Gaps = 20/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E      + +   + +      A     DK  SK ++ + GVP+ P    
Sbjct: 114 AIHPGYGFLSESADFAQLCKAEGLTFIGPPPSAIRDMGDKSASKWIMGAAGVPLVPGYHG 173

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQS-----IPLDLLQSSSWNHGD 164
               ++      + I  P +IKP  GG   G+ ++++ +      +      ++S+    
Sbjct: 174 AEQDIELLKLEANKIGYPVLIKPTHGGGGKGMRIVQRPEDFVDSVLSAQREAAASFGINT 233

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLD 222
            LL+E+Y+     +   + GD   +V  +           L+          PA  +   
Sbjct: 234 -LLVEKYITQPRHIEVQIFGDQHGNVIHLYE-----RDCSLQRRHQKIIEEAPAPNVTAQ 287

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
               +   A  A +A+G       +F+ D LS + +++E+N 
Sbjct: 288 FRSHIGEAAVSAAKAVGYYSAGTVEFIVDTLSGEFYFMEMNT 329


>gi|323489486|ref|ZP_08094713.1| Carbamoyl-phosphate synthase L chain ATP- binding protein
           [Planococcus donghaensis MPA1U2]
 gi|323396617|gb|EGA89436.1| Carbamoyl-phosphate synthase L chain ATP- binding protein
           [Planococcus donghaensis MPA1U2]
          Length = 449

 Score = 93.6 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 33/219 (15%), Positives = 83/219 (37%), Gaps = 17/219 (7%)

Query: 58  LHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS---- 110
           +H  +G   E+      +    + +            DK+ S++ +   GVPV P     
Sbjct: 77  IHPGYGLLSENADFARKVAEAGMTFIGPSSDIIEKMGDKIESRRTMIQAGVPVVPGTEEG 136

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQL 166
           +   +  +     I  P ++K   GG  +G++  + +Q++         ++ ++   D +
Sbjct: 137 VTTLQEALQEAEAIGYPLMLKASAGGGGIGMVRCESEQALTQQFESVKNRAKAYFGDDVV 196

Query: 167 LIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
            +E+++ D   +   + GD   ++  +            K             +P ++ +
Sbjct: 197 YLEKFIADARHIEVQIFGDHHGNLVHLYERNCSVQRRNQK----VIEESPSPNLPQEVRE 252

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +   A  A +A+        +F+ D  + + ++LE+N 
Sbjct: 253 RLCEAALQAGKAVNYTNAGTVEFIVDA-NNEFYFLEMNT 290


>gi|74039799|gb|AAZ94921.1| putative D-alanine:D-lactate ligase [uncultured bacterium]
          Length = 126

 Score = 93.6 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 32/129 (24%), Positives = 63/129 (48%), Gaps = 10/129 (7%)

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS----LDVTEIAVP 195
           G+  + ++  +   L   ++  +  ++LIE+ V G E+ C ++G+ S     +V  + + 
Sbjct: 1   GVSKVTREDELSSAL--ETARQYDSKILIEEAVVGREIGCAILGEGSDLIVGEVDRVDLS 58

Query: 196 KSDFYSYE---LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
              F  ++    +  S NST ++PA IP D  + VQ      ++A+GC+G++R D     
Sbjct: 59  HGFFRIHQEDSPETGSENSTFIVPADIPEDSRRLVQETGMAFYRALGCKGLARVDMFLT- 117

Query: 253 LSRKVFWLE 261
              +V   E
Sbjct: 118 DGGEVVLNE 126


>gi|315453076|ref|YP_004073346.1| biotin carboxylase [Helicobacter felis ATCC 49179]
 gi|315132128|emb|CBY82756.1| biotin carboxylase [Helicobacter felis ATCC 49179]
          Length = 449

 Score = 93.3 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 43/225 (19%), Positives = 78/225 (34%), Gaps = 14/225 (6%)

Query: 49  LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
            + D  F   +G   E+     I     I +        AL  DK ++K V+   GVPV 
Sbjct: 80  FEADAIFPG-YGFLSENQNFVEICSHHGIEFIGPDAKVMALMGDKSKAKAVMREAGVPVI 138

Query: 109 PS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSW 160
                 +      +     I  P +IK   GG   G+ V++    +         ++ S 
Sbjct: 139 EGSEGVLRGYEEALKVAERIGFPIIIKAANGGGGRGMRVVEDPSLLKNLYLAAETEALSA 198

Query: 161 NHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI 219
                + IE+++ D   +   ++ D   +V  I          + K        V    +
Sbjct: 199 FGDGSVYIEKFIKDPKHIEVQILADKHGNVLHIGERDCSTQRRQQKLIEETPAMV----L 254

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              +   +   A  A + IG  G    +FL D   +  +++E+N 
Sbjct: 255 DPCVRARLLETATKAAKHIGYVGAGTFEFLLDGNGQDFYFMEMNT 299


>gi|313200738|ref|YP_004039396.1| urea carboxylase [Methylovorus sp. MP688]
 gi|312440054|gb|ADQ84160.1| urea carboxylase [Methylovorus sp. MP688]
          Length = 1208

 Score = 93.3 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 39/219 (17%), Positives = 76/219 (34%), Gaps = 15/219 (6%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       E   I +             K  ++ +  + GVP+ P   +
Sbjct: 77  AIHPGYGFLSENPGFAEACEAAGIAFIGPTPQQMRDFGLKHTARALAEANGVPLLPGTGL 136

Query: 114 NRFTMDS---QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQL 166
                ++      I  P ++K   GG  +G+ +I  ++ +          S +      L
Sbjct: 137 LADVAEARTHAARIGYPVMLKSTAGGGGIGMRLIWGEEELAEAFASVQRLSRANFKESGL 196

Query: 167 LIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
            +E+YV+    +   + GD +  V  +            K             I   I +
Sbjct: 197 YLEKYVEAARHIEVQIFGDGAGHVVALGERDCSVQRRNQK----VIEETPAPNISEAIRQ 252

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           ++   A     AIG R     +F++D  S   ++LE+N 
Sbjct: 253 QLAETAVRLASAIGYRSAGTVEFVYDNASGDFYFLEVNT 291


>gi|255319008|ref|ZP_05360231.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Acinetobacter
           radioresistens SK82]
 gi|255303935|gb|EET83129.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Acinetobacter
           radioresistens SK82]
          Length = 457

 Score = 93.3 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 78/220 (35%), Gaps = 19/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     I+E     +         L  +K+ +   +   GVP  P    
Sbjct: 77  AIHPGYGFLSENAEFAEIVESSGFIFIGPRPEHIRLMGNKVSAIMAMKKSGVPTVPGSAH 136

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD----QSIPLDLLQSSSWNHGDQL 166
            +     +     I  P ++K   GG   G+ ++++     +S+      +  W   D +
Sbjct: 137 AVTTNNALAEAKEIGFPLIVKAASGGGGRGMRIVERVDTLLESVQAAQRDAEMWFGDDTV 196

Query: 167 LIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIY 224
            +E+++     +   ++GD +     +           L+          PA  +P    
Sbjct: 197 YMERFLQKPRHVEVQILGDGNGHAIHLY-----DRDCSLQRRHQKVLEEAPAPFLPEQAR 251

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            ++      A + +  RG    +FLF     + F++E+N 
Sbjct: 252 ADILEACVNACKLMQYRGAGTFEFLF--EDGEFFFIEMNT 289


>gi|302307478|ref|NP_984147.2| ADR051Cp [Ashbya gossypii ATCC 10895]
 gi|299789020|gb|AAS51971.2| ADR051Cp [Ashbya gossypii ATCC 10895]
          Length = 1819

 Score = 93.3 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 39/273 (14%), Positives = 93/273 (34%), Gaps = 37/273 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDL-AFNVLH 59
           +AV +GG S+         +             + +D+D+   ++ A  K D  A    +
Sbjct: 667 VAVALGGSSA--------AE-------------TYLDIDK---ILAAAKKTDTQAIIPGY 702

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT-- 117
           G   E+           I +      +      K  ++++ +S GVP+     + +    
Sbjct: 703 GFLSENATFAERCGAEGIVFVGPSGDSIRKLGLKHWARELAASAGVPLTKGTGLLQSASA 762

Query: 118 -MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS----SSWNHGDQLLIEQYV 172
            +++   I  P ++K   GG  +G+  +     +     Q       +     + +E ++
Sbjct: 763 ALEAGEEIGYPLMVKSTAGGGGIGLQRVDSAAELAAAFEQVQRQGELYFTDSGVFLESFI 822

Query: 173 -DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
                +   +MGD       +            K             +P    +++++ A
Sbjct: 823 ARARHVEVQIMGDGHGRTVALGERDCSLQRRNQKII----EETPAPNLPAHTRQKMRQAA 878

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
                A+  +     +F++D    + ++LE+N 
Sbjct: 879 QRLCSAVKYKCAGTVEFMYDEQKDEFYFLEVNT 911


>gi|83414183|dbj|BAE53882.1| D-alanine:D-alanine ligase [Streptococcus anginosus]
 gi|83414187|dbj|BAE53884.1| D-alanine:D-alanine ligase [Streptococcus anginosus]
          Length = 96

 Score = 93.3 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 49/96 (51%), Gaps = 2/96 (2%)

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNST 212
               ++ +  ++LIEQ V+  E+  G++G+  +  +     V    FY YE KY     T
Sbjct: 1   ALELAFKYDSRVLIEQGVNAREIEVGLLGNKGVKSSLPGEVVKDVAFYDYEAKYIDNKIT 60

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
             +PAK+  D+   +++ A  A  AIG  G++R DF
Sbjct: 61  MDIPAKLSEDVIATMRQYAEKAFHAIGGVGLARCDF 96


>gi|83414181|dbj|BAE53881.1| D-alanine:D-alanine ligase [Streptococcus anginosus]
          Length = 96

 Score = 93.3 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 2/96 (2%)

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--DVTEIAVPKSDFYSYELKYSSLNST 212
               ++ +  ++LIEQ V+  E+  G++G+      +    V    FY YE KY     T
Sbjct: 1   ALELAFKYDSRVLIEQGVNAREIEVGLLGNKEAQSSLPGEVVKDVAFYDYEAKYIDNKIT 60

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
             +PAK+  D+   +++ A  A  AIG  G+SR DF
Sbjct: 61  MDIPAKLSEDVIATMRQYAEKAFHAIGGVGLSRCDF 96


>gi|262378271|ref|ZP_06071428.1| acetyl-CoA carboxylase, biotin carboxylase [Acinetobacter
           radioresistens SH164]
 gi|262299556|gb|EEY87468.1| acetyl-CoA carboxylase, biotin carboxylase [Acinetobacter
           radioresistens SH164]
          Length = 457

 Score = 93.3 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 78/220 (35%), Gaps = 19/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     I+E     +         L  +K+ +   +   GVP  P    
Sbjct: 77  AIHPGYGFLSENAEFAEIVESSGFIFIGPRPEHIRLMGNKVSAIMAMKKSGVPTVPGSAH 136

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD----QSIPLDLLQSSSWNHGDQL 166
            +     +     I  P ++K   GG   G+ ++++     +S+      +  W   D +
Sbjct: 137 AVTTNNALAEAKEIGFPLIVKAASGGGGRGMRIVERVDTLLESVQAAQRDAEMWFGDDTV 196

Query: 167 LIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIY 224
            +E+++     +   ++GD +     +           L+          PA  +P    
Sbjct: 197 YMERFLQKPRHVEVQILGDGNGHAIHLY-----DRDCSLQRRHQKVLEEAPAPFLPEQAR 251

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            ++      A + +  RG    +FLF     + F++E+N 
Sbjct: 252 ADILEACVNACKLMQYRGAGTFEFLF--EDGEFFFIEMNT 289


>gi|332818480|ref|XP_516898.3| PREDICTED: methylcrotonoyl-CoA carboxylase subunit alpha,
           mitochondrial [Pan troglodytes]
          Length = 725

 Score = 93.3 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 41/221 (18%), Positives = 83/221 (37%), Gaps = 19/221 (8%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H   G   E+     + +   + +      A      K  SK ++++ GVPV      
Sbjct: 124 AIHPGCGFLSENMEFAELCKQEGMIFIGPPPSAIRDMGIKSTSKSIMAAAGVPVVEGYHG 183

Query: 113 ---VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
               ++   +    I  P +IK ++GG   G+ +++ +Q     L  +          D 
Sbjct: 184 EDQSDQCLKEHARRIGYPVMIKAVRGGGGKGMRIVRSEQEFQEQLESARREAKKSFNDDA 243

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           +LIE++VD    +   V GD   +   +           ++          PA  I  ++
Sbjct: 244 MLIEKFVDTPRHVEVQVFGDHHGNAVYL-----FERDCSVQRRHQKIIEEAPAPGIKSEV 298

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            K++   A  A +A+   G    +F+ D      +++E+N 
Sbjct: 299 RKKLGEAAVRAAKAVNYVGAGTVEFIMDSKHN-FYFMEMNT 338


>gi|295677603|ref|YP_003606127.1| urea carboxylase [Burkholderia sp. CCGE1002]
 gi|295437446|gb|ADG16616.1| urea carboxylase [Burkholderia sp. CCGE1002]
          Length = 1199

 Score = 93.3 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 50/297 (16%), Positives = 101/297 (34%), Gaps = 37/297 (12%)

Query: 17  SSGKACASALEDAGFKVSQIDVDRSVGLV----LAHLKPDLAFNVLHGNFGEDGLVQAIL 72
            S    A AL D    ++ +DVD+ + +     +  + P   F   +  FGE        
Sbjct: 42  VSEAPVAHALGDGPAALTYLDVDKILAIARREGVQAIHPGYGFLSENAAFGE------AC 95

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF---TMDSQHLISPPYV 129
           E   I +             K  ++++ ++ GVP+     +       + +   I  P +
Sbjct: 96  EAAGIAFIGPTPAQLRAFGLKHTAREIAANEGVPMLEGTGLLADVPAALTAAQTIGYPVM 155

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQLLIEQYVD-GIELTCGVMGD 184
           +K   GG  +G+ V      +                   + +E+Y++    L   V GD
Sbjct: 156 LKSTAGGGGIGMRVCWNADELGAHFDAVRRLGENNFSDAGVFLEKYIERARHLEVQVFGD 215

Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244
              D   + V          K             +P  +   +   A    +A+  R   
Sbjct: 216 GKGDALALGVRDCSVQRRNQKVL----EETPAPCLPDGVQAALCEAAVRLAKAVDYRSAG 271

Query: 245 RSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR----ELLLWMVEDAS 297
             +F++D  + + ++LE+N             +    G + +    +L+ WM+E A+
Sbjct: 272 TVEFVYDSAAERFYFLEVNT-----------RLQVEHGVTEQVWGVDLVRWMIELAA 317


>gi|154339573|ref|XP_001562478.1| hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904]
 gi|134063061|emb|CAM39511.1| conserved hypothetical protein [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 516

 Score = 93.3 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 53/254 (20%), Positives = 99/254 (38%), Gaps = 26/254 (10%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGL----VQAILELLEIPYTHSGILASALSMDKMR 95
           R +  ++   K D+ +N   G   ED      V+A+ E  ++P+T    +A    M K  
Sbjct: 61  RQIRQLVMSGKFDVFYNQCDGAKDEDRAGVEVVEALAEF-KVPHTG--AIAKYYEMSKPD 117

Query: 96  SKQVVSSCGVPVCPSILVNRFTMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153
            K V     +      ++            +  P +IK + G SS+G+    K   +   
Sbjct: 118 MKLVAHYYNIETANYAVLEPGDDIESLCGHLEFPCIIKHISGYSSVGMDKSCKVYDMAQL 177

Query: 154 LLQSSSW-NHGDQLLIEQYVDGIELTCGVMGD-------ASLDVTEIAVPKS-DFYSYEL 204
           + +++ +       L+E++V G E T     D             ++  P+  DF  ++L
Sbjct: 178 VDRATRFMAEYQFALVEEFVSGDEATILACNDCTQPEGVRVFPPVQVTFPEGEDFKHFQL 237

Query: 205 KY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAH-QAIGCRGISRSDFLFDPL-SRKVFWLE 261
           K+ S          ++   +   +  +A  A  + +G  G  R D   D   + KV +LE
Sbjct: 238 KWASYEGMKWKQVPEMDPALQDMIS-IARSAFKRMMGGIGYGRIDVRIDRQRNNKVVFLE 296

Query: 262 INVQPGMTPVSIFP 275
           IN   G+    ++P
Sbjct: 297 INPNCGI----MYP 306


>gi|302392493|ref|YP_003828313.1| biotin carboxylase ;acetyl-CoA carboxylase carboxyltransferase
           subunit alpha [Acetohalobium arabaticum DSM 5501]
 gi|302204570|gb|ADL13248.1| biotin carboxylase ;acetyl-CoA carboxylase carboxyltransferase
           subunit alpha [Acetohalobium arabaticum DSM 5501]
          Length = 450

 Score = 93.3 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 33/220 (15%), Positives = 82/220 (37%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---- 109
            +H  +G   E+     + E   I +      +     DK  +++ +   GVPV P    
Sbjct: 77  AIHPGYGFLSENAYFAEVCETCGIKFIGPSAESMEQMGDKSIARETMIEAGVPVVPGTEG 136

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
            +      +++   I  P ++K   GG   G+   + +  +   +     ++ +     +
Sbjct: 137 GLSGLEEAVETADEIGYPVIVKAAFGGGGRGMRTAQNEDDLKQAIQTASSEAEAAFGNAE 196

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+Y++    +   ++ D   +V  +            K             + +D+ 
Sbjct: 197 VYLEKYIEEPRHIEFQIIADEHGNVVHLGERDCSIQRRHQK----VIEEAPSPALDVDLR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +E+ + A  A +A+        +FL D  +   +++E+N 
Sbjct: 253 EEMGQAAVKAAEAVNYANAGTVEFLLDKHNN-YYFIEMNT 291


>gi|222085639|ref|YP_002544169.1| acetyl-CoA carboxylase, biotin carboxylase [Agrobacterium
           radiobacter K84]
 gi|221723087|gb|ACM26243.1| acetyl-CoA carboxylase, biotin carboxylase [Agrobacterium
           radiobacter K84]
          Length = 450

 Score = 93.3 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 85/220 (38%), Gaps = 18/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     IL+   I +         +  DK+ +K      G+PV P    
Sbjct: 79  AVHPGYGFLSENAKFADILDAHGITFIGPTADHIRIMGDKITAKTTAQQLGIPVVPGSDG 138

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
            +      + +   I  P +IK   GG   G+ V + +  +         ++++    + 
Sbjct: 139 EVKTEEEALKTAKEIGYPVLIKATAGGGGRGMKVARTEADVLEAWSTARTEAAAAFGNES 198

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+Y+     +   V GD   +   +        S + ++  +      PA + ++  
Sbjct: 199 VYMEKYLGKPRHIEIQVFGDGEGNAIHLGERD---CSLQRRHQKVWEEANSPA-LNVEQR 254

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            ++ ++   A   +  RG    +FL+   + + +++E+N 
Sbjct: 255 MKIGQICADAMMKLKYRGAGTIEFLY--ENGEFYFIEMNT 292


>gi|126338196|ref|XP_001369965.1| PREDICTED: similar to 3-methylcrotonyl-CoA carboxylase
           biotin-containing subunit [Monodelphis domestica]
          Length = 738

 Score = 93.3 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 86/221 (38%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H  +G   E+     + +   I +      A      K  SK ++S+ GVPV      
Sbjct: 137 AIHPGYGFLSENTEFAELCKQERIIFIGPPSSAIRDMGIKSTSKAIMSAAGVPVIEGYHG 196

Query: 113 ---VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
               ++   +    I  P +IK ++GG   G+ + + ++     L  +          D 
Sbjct: 197 EDQSDQCLKEHARKIGYPIMIKAVRGGGGKGMRIARSEEEFQEQLESARREAKKSFNDDA 256

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           +LIE++VD    +   V GD   +   +           ++          PA  I L++
Sbjct: 257 MLIEKFVDTPRHVEVQVFGDQHGNAVYL-----FERDCSVQRRHQKIIEEAPAPGIDLEV 311

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +++   A  A +A+   G    +F+ DP +   +++E+N 
Sbjct: 312 RRKLGEAAVRAAKAVNYVGAGTVEFIMDP-NHNFYFMEMNT 351


>gi|83414177|dbj|BAE53879.1| D-alanine:D-alanine ligase [Streptococcus anginosus]
          Length = 96

 Score = 93.3 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 2/96 (2%)

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNST 212
               ++ +  ++LIEQ V+  E+  G++G+     +     V    FY YE KY     T
Sbjct: 1   ALELAFKYDSRVLIEQGVNAREIEVGLLGNKGAKSSLPGEVVKDVAFYDYEAKYIDNKIT 60

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
             +PAK+  D+   +++ A  A  AIG  G+SR DF
Sbjct: 61  MDIPAKLSEDVIATMRQYAEKAFHAIGGVGLSRCDF 96


>gi|319950964|ref|ZP_08024836.1| acyl-CoA carboxylase alpha chain [Dietzia cinnamea P4]
 gi|319435386|gb|EFV90634.1| acyl-CoA carboxylase alpha chain [Dietzia cinnamea P4]
          Length = 695

 Score = 92.9 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 42/222 (18%), Positives = 81/222 (36%), Gaps = 19/222 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      L+   + +      A     DK+ +K  VS   VP  P I  
Sbjct: 84  AVHPGYGFLSENARFARALDEAGLIFIGPPASAIETMGDKITAKAAVSERDVPTVPGISR 143

Query: 114 NRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS-----SWNHGD 164
              T D        +  P ++KP  GG   G+  +     +P  L  +      ++   D
Sbjct: 144 PGLTDDELIAGAEEVGYPVLVKPSAGGGGKGMRRVADPAELPAALESARRESAGAFG-DD 202

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            L +E++VD    +   V+ D   +V  +   +        K           A +    
Sbjct: 203 TLFLERFVDTPRHIEVQVLADTHGNVIHLGERECSLQRRHQK----VIEEAPSALLDEAT 258

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLS-RKVFWLEINV 264
            + + + A  A +++G  G    +F+    +  + F++E+N 
Sbjct: 259 RERIGQAACDAARSVGYVGAGTVEFIVSAHAPDEFFFMEMNT 300


>gi|83415056|dbj|BAE53787.1| D-alanine:D-alanine ligase [Streptococcus sinensis]
          Length = 96

 Score = 92.9 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 28/96 (29%), Positives = 51/96 (53%), Gaps = 2/96 (2%)

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNST 212
               ++ +  ++L+EQ V+  E+  G++G+ ++  T     V    FY YE KY     T
Sbjct: 1   ALDLAFKYDSRVLVEQGVNAREIEVGLLGNYAVKSTLPGEVVKDVAFYDYEAKYIDNRIT 60

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
             +PAKI  ++   ++  A  A +A+G +G++R DF
Sbjct: 61  MDIPAKISDEVTSIMRTNAETAFRALGGQGLARCDF 96


>gi|329664748|ref|NP_001192687.1| methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial [Bos
           taurus]
 gi|297471075|ref|XP_002684933.1| PREDICTED: Propionyl Coenzyme A Carboxylase Alpha subunit family
           member (pcca-1)-like [Bos taurus]
 gi|296491263|gb|DAA33326.1| Propionyl Coenzyme A Carboxylase Alpha subunit family member
           (pcca-1)-like [Bos taurus]
          Length = 725

 Score = 92.9 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 83/221 (37%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H  +G   E+     + +   I +      A      K  SK ++++ GVPV      
Sbjct: 124 AIHPGYGFLSENMEFAELCKQEGIIFVGPPSSAIRDMGIKSTSKSIMAAAGVPVVEGYHG 183

Query: 113 ---VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
               ++   +    I  P +IK ++GG   G+ +++ ++     L  +          D 
Sbjct: 184 EDQSDQCLKEHARTIGYPVMIKAVRGGGGKGMRIVRSEKEFQEQLESARREAKKSFNDDA 243

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDI 223
           +LIE++VD    +   V GD   +   +           ++          P   I  ++
Sbjct: 244 MLIEKFVDTPRHVEVQVFGDHHGNAVYL-----FERDCSVQRRHQKIIEEAPGPGIKPEV 298

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            K++   A  A +A+   G    +F+ D      +++E+N 
Sbjct: 299 RKKLGEAAVRAAKAVNYVGAGTVEFIMDSKHN-FYFMEMNT 338


>gi|262368317|ref|ZP_06061646.1| biotin carboxylase [Acinetobacter johnsonii SH046]
 gi|262315995|gb|EEY97033.1| biotin carboxylase [Acinetobacter johnsonii SH046]
          Length = 453

 Score = 92.9 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 78/220 (35%), Gaps = 19/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     I+E     +         L  +K+ +   +   GVP  P    
Sbjct: 77  AIHPGYGFLSENAEFAEIVENSGFIFIGPRPEHIRLMGNKVSAITAMRKAGVPTVPGSAN 136

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD----QSIPLDLLQSSSWNHGDQL 166
            +  +  +     I  P ++K   GG   G+ ++++     +S+      +  W   D +
Sbjct: 137 AVTPQNALAEAKEIGFPLIVKAASGGGGRGMRIVERVDTLLESVQAAQRDAEMWFGDDTV 196

Query: 167 LIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIY 224
            +E+++     +   V+ D +     +           L+          PA  +P    
Sbjct: 197 YMERFLQTPRHVEVQVLADGNGHAIHLY-----DRDCSLQRRHQKVLEEAPAPNLPEQAR 251

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            ++      A + +  RG    +FLF     + F++E+N 
Sbjct: 252 ADILEACVNACKLMQYRGAGTFEFLF--EDGEFFFIEMNT 289


>gi|227821676|ref|YP_002825646.1| acetyl-CoA carboxylase biotin carboxylase subunit [Sinorhizobium
           fredii NGR234]
 gi|227340675|gb|ACP24893.1| acetyl-CoA carboxylase, biotin carboxylase protein [Sinorhizobium
           fredii NGR234]
          Length = 447

 Score = 92.9 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 38/219 (17%), Positives = 86/219 (39%), Gaps = 17/219 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---S 110
            +H  +G   E+     ILE   I +         L  DK+ +K+     G+PV P    
Sbjct: 77  AVHPGYGFLSENAKFADILEAHGITFIGPTAEHIRLMGDKITAKKTAEELGIPVVPGSDG 136

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQL 166
            +     +     I  P +IK   GG   G+ V + ++ +   +  + +        D +
Sbjct: 137 EVKPENALKVAREIGFPVLIKATAGGGGRGMKVARTEEDLEHAVATARAEAAAAFGNDAV 196

Query: 167 LIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
            +E+++     +   V+GD   +   +        S + ++  +      PA + ++   
Sbjct: 197 YMEKFLGKPRHIEIQVIGDGEGNAIHLGERD---CSLQRRHQKVWEEANSPA-LNVEQRM 252

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           ++ ++   A + +  RG    +FL+     + +++E+N 
Sbjct: 253 KIGQVCADAMKKMKYRGAGTIEFLY--EDGEFYFIEMNT 289


>gi|301785297|ref|XP_002928062.1| PREDICTED: methylcrotonoyl-CoA carboxylase subunit alpha,
           mitochondrial-like [Ailuropoda melanoleuca]
 gi|281345165|gb|EFB20749.1| hypothetical protein PANDA_017961 [Ailuropoda melanoleuca]
          Length = 725

 Score = 92.9 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 41/221 (18%), Positives = 83/221 (37%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H  +G   E+     + +   I +      A      K  SK ++++ GVPV      
Sbjct: 124 AIHPGYGFLSENAEFAELCKQEGILFIGPPSSAIKDMGIKSTSKAIMAAAGVPVVEGYHG 183

Query: 113 ---VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
               ++   +    I  P +IK ++GG   G+ +++ ++     L  +          D 
Sbjct: 184 EDQSDQCLREQAGRIGYPVMIKAVRGGGGKGMRIVRSEEEFQEQLESARREAKKSFNDDA 243

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDI 223
           +LIE++VD    +   V GD   +   +           ++          P   I  +I
Sbjct: 244 MLIEKFVDTPRHVEVQVFGDYHGNAVYL-----FERDCSVQRRHQKIIEEAPGPGIKPEI 298

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            K++   A  A +A+   G    +F+ D      +++E+N 
Sbjct: 299 RKKLGEAAVRAAKAVNYVGAGTVEFIMDSKHN-FYFMEMNT 338


>gi|21221228|ref|NP_627007.1| acetyl/propionyl CoA carboxylase subunit alpha [Streptomyces
           coelicolor A3(2)]
 gi|7544041|emb|CAB87214.1| acetyl/propionyl CoA carboxylase alpha subunit [Streptomyces
           coelicolor A3(2)]
          Length = 646

 Score = 92.9 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 43/216 (19%), Positives = 82/216 (37%), Gaps = 14/216 (6%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP----SILVN 114
           +G   E+       E   + +      A AL  DK+R+K+ V + GVPV P    S L +
Sbjct: 82  YGFLAENAGFARACEEAGLVFIGPSADAIALMGDKIRAKETVRAAGVPVVPGSSGSGLTD 141

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQLLIEQ 170
               D+   I  P ++KP  GG   G+ +++    +  ++  +          D LL+E+
Sbjct: 142 EQLADAAREIGTPVLLKPSAGGGGKGMRLVRDTAVLADEIAAARREARASFGDDTLLVER 201

Query: 171 YVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           ++D    +   V+ D    V  +   +        K             +       +  
Sbjct: 202 WIDRPRHIEIQVLADGHGGVVHLGERECSLQRRHQK----VIEEAPSVLLDEATRAAMGE 257

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLS-RKVFWLEINV 264
            A  A ++ G RG    +F+       + +++E+N 
Sbjct: 258 AAVQAARSCGYRGAGTVEFIVPGSDPSQYYFMEMNT 293


>gi|323358082|ref|YP_004224478.1| acetyl/propionyl-CoA carboxylase, alpha subunit [Microbacterium
           testaceum StLB037]
 gi|323274453|dbj|BAJ74598.1| acetyl/propionyl-CoA carboxylase, alpha subunit [Microbacterium
           testaceum StLB037]
          Length = 684

 Score = 92.9 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 83/221 (37%), Gaps = 17/221 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       E   I +   G  A  +  DK+ +K  V + GVP  P +  
Sbjct: 77  AIHPGYGFLAENAAFARACEEAGIVFVGPGAEAIRVMGDKITAKHAVEARGVPTVPGVAR 136

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
              T D    +   +  P +IKP  GG   G+ V+++  ++P  +  +          D 
Sbjct: 137 AGMTDDELIAAGEEVGYPLLIKPSAGGGGKGMHVVEESAALPEAISAARREAAASFGDDT 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           L +E+YV     +   V+ DA   V  +   +        K             +  +  
Sbjct: 197 LFLERYVRSPRHIEVQVLADAHGGVVHLGERECSLQRRHQK----VIEEAPSPLLDAETR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLS-RKVFWLEINV 264
             + R A    +++  RG    +F+    +  + F++E+N 
Sbjct: 253 ARIGRAACETARSVDYRGAGTVEFIVSAEAPGEFFFMEMNT 293


>gi|50082939|gb|AAT70091.1| D-alanyl-D-alanine ligase [Rhodococcus sp. RE-S7B]
          Length = 126

 Score = 92.9 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 33/129 (25%), Positives = 64/129 (49%), Gaps = 10/129 (7%)

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD----ASLDVTEIAVP 195
           G+  + ++  +P  L  S++  +  ++LIE+ V G E+ C VMG+     + +V  + + 
Sbjct: 1   GVSKVTREDELPNAL--SAARQYDSKVLIEEAVAGSEIGCAVMGELFGLITGEVDRVDLS 58

Query: 196 KSDFYSYE---LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
              F  ++    +  S NST ++PA I  +  + VQ  A   ++ +GC+G++R D     
Sbjct: 59  HGFFRIHQEDSPETGSENSTFIVPADISDESRRLVQETAKAIYRTLGCKGLARVDMFLT- 117

Query: 253 LSRKVFWLE 261
              +V   E
Sbjct: 118 DDGRVVLNE 126


>gi|77457565|ref|YP_347070.1| allophanate hydrolase subunit 2 [Pseudomonas fluorescens Pf0-1]
 gi|77381568|gb|ABA73081.1| putative allophanate hydrolase [Pseudomonas fluorescens Pf0-1]
          Length = 1210

 Score = 92.9 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 41/256 (16%), Positives = 84/256 (32%), Gaps = 30/256 (11%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+           I +         +   K  ++ +    GVP+     +
Sbjct: 77  AIHPGYGFLSENAAFAEACANHGIAFIGPTPEQLRVFGLKHTARALAKQHGVPMLEGTEL 136

Query: 114 NRF---TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQL 166
                  + +   +  P ++K   GG  +G+ V +    +                   +
Sbjct: 137 LDSLDAALIAGAQVGYPVMLKSTAGGGGIGMRVCRNASELSESFEAVKRLGQNNFSDAGV 196

Query: 167 LIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
            IE+Y+     L   V GD    V  + V          K             +P  +  
Sbjct: 197 FIEKYIQRARHLEVQVFGDGQGAVIALGVRDCSVQRRNQKVL----EETPAPNLPDGMAD 252

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285
           E+   A    +A+  R     +F+FD  +++ ++LE+N             +    G + 
Sbjct: 253 ELCAAAIKLAKAVNYRSAGTVEFVFDSDAQRFYFLEVNT-----------RLQVEHGVTE 301

Query: 286 R----ELLLWMVEDAS 297
           +    +L+ WM+E A+
Sbjct: 302 QVWGVDLVRWMIELAA 317


>gi|213963569|ref|ZP_03391822.1| acetyl-CoA carboxylase, biotin carboxylase [Capnocytophaga
           sputigena Capno]
 gi|213953849|gb|EEB65178.1| acetyl-CoA carboxylase, biotin carboxylase [Capnocytophaga
           sputigena Capno]
          Length = 450

 Score = 92.9 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 75/220 (34%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     I     I +  +         DK  +K  + + GVP  P    
Sbjct: 77  AIHPGYGFLSENAKFSKICAEHGIKFIGASPEMIEKMGDKASAKATMKAAGVPTVPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS-----SSWNHGD 164
            +            I  P ++K   GG   G+  + K++ +   L  +     +++ +  
Sbjct: 137 LVESLEHAKKIAAEIGYPVMLKATAGGGGRGMRDVWKEEDLEKALNSAMQEAGAAFGNDA 196

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             + +  VD   +   ++GD       ++           K     +       +  D+ 
Sbjct: 197 MYMEKLIVDPRHIEIQIVGDQYGKACHLSERDCSIQRRHQK----LTEETPSPFMTDDLR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K +   A  A + I   G    +FL D   R  +++E+N 
Sbjct: 253 KRMGEAAVKAAEFIKYEGAGTVEFLVDK-DRNFYFMEMNT 291


>gi|294678124|ref|YP_003578739.1| acetyl-CoA carboxylase biotin carboxylase [Rhodobacter capsulatus
           SB 1003]
 gi|294476944|gb|ADE86332.1| acetyl-CoA carboxylase, biotin carboxylase [Rhodobacter capsulatus
           SB 1003]
          Length = 448

 Score = 92.9 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 74/220 (33%), Gaps = 18/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---- 109
            +H  +G   E+     +LE   I +         +  DK+ +K      G+PV P    
Sbjct: 77  AIHPGYGFLSENATFVQVLEDHGITFIGPKAEHIRIMGDKITAKDTAKKLGIPVVPGSDG 136

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
            +        +   +  P +IK   GG   G+ V + +  + +       ++ +    D+
Sbjct: 137 GVPDFEAAKKAAAEMGYPVIIKATAGGGGRGMKVAQSEAELEIAFRTARSEAKAAFGNDE 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+Y+     +   + GD       +            K             I  +  
Sbjct: 197 VYMEKYLQRPRHIEVQIFGDGRGRAVHLGERDCSLQRRHQKVF----EEAPGPCITPEQR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +  +   A   +G  G    +FL+     + +++E+N 
Sbjct: 253 ARIGGICAKAMGELGYSGAGTIEFLY--EDGEFYFIEMNT 290


>gi|83414125|dbj|BAE53853.1| D-alanine:D-alanine ligase [Streptococcus sanguinis]
 gi|83414135|dbj|BAE53858.1| D-alanine:D-alanine ligase [Streptococcus sanguinis]
          Length = 96

 Score = 92.9 bits (230), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 30/95 (31%), Positives = 50/95 (52%), Gaps = 2/95 (2%)

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTH 213
              ++ +  ++L+EQ V   E+  G++G+  +  T     V    FY YE KY     T 
Sbjct: 2   LDLAFKYDSRVLVEQGVTAREIEVGLLGNVDVKSTLPGEVVKDVAFYDYEAKYIDNKITM 61

Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
            +PAKIP ++   +++ A  A +A+G  G+SR DF
Sbjct: 62  DIPAKIPEEVVSLMRQNAETAFRALGGLGLSRCDF 96


>gi|314965741|gb|EFT09840.1| conserved domain protein [Propionibacterium acnes HL082PA2]
 gi|314982883|gb|EFT26975.1| conserved domain protein [Propionibacterium acnes HL110PA3]
 gi|315091192|gb|EFT63168.1| conserved domain protein [Propionibacterium acnes HL110PA4]
 gi|315094423|gb|EFT66399.1| conserved domain protein [Propionibacterium acnes HL060PA1]
 gi|327328919|gb|EGE70679.1| D-alanine--D-alanine ligase B [Propionibacterium acnes HL103PA1]
          Length = 123

 Score = 92.9 bits (230), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 34/113 (30%), Positives = 46/113 (40%), Gaps = 2/113 (1%)

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
           G   L   EI  P    Y Y   Y+   +    PA I     +    +A +  + +   G
Sbjct: 7   GTRVLPAVEIR-PVGGVYDYSAMYTGGETRLTAPADISGTAAQTATAMARVVQKELDFSG 65

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           ISR D + D   R VF LE    PGMT  S+ P     AG    E+   +V+D
Sbjct: 66  ISRVDAIVDESGRPVF-LEAGAAPGMTATSLVPVAMKAAGLDLGEVCSRLVDD 117


>gi|170078726|ref|YP_001735364.1| acetyl-CoA carboxylase biotin carboxylase subunit [Synechococcus
           sp. PCC 7002]
 gi|169886395|gb|ACB00109.1| acetyl-CoA carboxylase, biotin carboxylase [Synechococcus sp. PCC
           7002]
          Length = 448

 Score = 92.9 bits (230), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 79/220 (35%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     I    +I +      A     DK  +K+ + +  VP  P    
Sbjct: 78  AIHPGYGFLAENAKFAEICADHQITFIGPSPEAMIAMGDKSTAKKTMQAAKVPTVPGSAG 137

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSWNHGDQ 165
            +      ++    I  P +IK   GG   G+ ++   + +P        ++ +      
Sbjct: 138 LVASEEQALEIAQQIGYPVMIKATAGGGGRGMRLVPSAEELPRLYRAAQGEAEAAFGNGG 197

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE++++    +   ++ D   +V  +            K           A +   + 
Sbjct: 198 VYIEKFIERPRHIEFQILADQYGNVIHLGERDCSIQRRHQKLL----EEAPSAILTPRLR 253

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            ++ + A  A ++I   G    +FL D  +   +++E+N 
Sbjct: 254 DKMGKAAVKAAKSIDYVGAGTVEFLVDK-NGDFYFMEMNT 292


>gi|83414165|dbj|BAE53873.1| D-alanine:D-alanine ligase [Streptococcus parasanguinis]
 gi|83414167|dbj|BAE53874.1| D-alanine:D-alanine ligase [Streptococcus parasanguinis]
 gi|83414169|dbj|BAE53875.1| D-alanine:D-alanine ligase [Streptococcus parasanguinis]
 gi|83414171|dbj|BAE53876.1| D-alanine:D-alanine ligase [Streptococcus parasanguinis]
          Length = 96

 Score = 92.9 bits (230), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 27/96 (28%), Positives = 50/96 (52%), Gaps = 2/96 (2%)

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNST 212
               ++ +  ++L+EQ V+  E+  G++G+  +  T     V    FY Y+ KY     T
Sbjct: 1   ALELAFKYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKIT 60

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
             +PA++  ++ K ++  A  A +AIG  G++R DF
Sbjct: 61  MAIPAQLDPEVVKTMRTNAEKAFRAIGGLGLARCDF 96


>gi|83414191|dbj|BAE53886.1| D-alanine:D-alanine ligase [Streptococcus anginosus]
 gi|83414195|dbj|BAE53888.1| D-alanine:D-alanine ligase [Streptococcus anginosus]
          Length = 96

 Score = 92.9 bits (230), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 2/96 (2%)

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--DVTEIAVPKSDFYSYELKYSSLNST 212
               ++ +  ++LIEQ V+  E+  G++G+      +    V    FY YE KY     T
Sbjct: 1   ALKLAFKYDSRVLIEQGVNAREIEVGLLGNEEAQSSLPGEVVKDVAFYDYEAKYIDNKIT 60

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
             +PAK+  D+   +++ A  A  AIG  G+SR DF
Sbjct: 61  MDIPAKLSEDVIATMRQYAEKAFHAIGGVGLSRCDF 96


>gi|74003228|ref|XP_535817.2| PREDICTED: similar to methylcrotonoyl-Coenzyme A carboxylase 1
           (alpha) isoform 1 [Canis familiaris]
          Length = 725

 Score = 92.9 bits (230), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 41/221 (18%), Positives = 83/221 (37%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H  +G   E+     + +   I +      A      K  SK ++++ GVPV      
Sbjct: 124 AIHPGYGFLSENMEFAELCKQEGIIFVGPPSSAIKDMGIKSTSKSIMAAAGVPVVEGYHG 183

Query: 113 ---VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
               ++   +    I  P +IK ++GG   G+ +++ ++     L  +          D 
Sbjct: 184 EDQSDQCLREHAGKIGYPVMIKAVRGGGGKGMRIVRSEEEFQEQLESARREAKKSFNDDA 243

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDI 223
           +LIE++VD    +   V GD   +   +           ++          P   I  D+
Sbjct: 244 MLIEKFVDTPRHVEVQVFGDYHGNAVYL-----FERDCSVQRRHQKIIEEAPGPGIKPDV 298

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            K++   A  A +A+   G    +F+ D      +++E+N 
Sbjct: 299 RKKLGEAAVRAAKAVNYVGAGTVEFIMDSKHN-FYFMEMNT 338


>gi|116071382|ref|ZP_01468651.1| acetyl-CoA carboxylase [Synechococcus sp. BL107]
 gi|116066787|gb|EAU72544.1| acetyl-CoA carboxylase [Synechococcus sp. BL107]
          Length = 448

 Score = 92.9 bits (230), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 74/220 (33%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     +     + +      A     DK  +K  + S GVP  P    
Sbjct: 78  AIHPGYGFLAENDKFAEMCNEHGLTFVGPSPHAIRSMGDKSTAKTTMQSVGVPTVPGSEG 137

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSWNHGDQ 165
            +   +        +  P +IK   GG   G+ ++     +         ++ +      
Sbjct: 138 LLSNPQEAAQLAAEMGYPVMIKATAGGGGRGMRLVPSPDQLESLYKAAQGEAEAAFGNPG 197

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           L +E+++D    +   V+ D   +V  +            K             +  ++ 
Sbjct: 198 LYMEKFIDRPRHVEVQVLADRHGNVVHLGERDCSIQRRHQKLL----EEAPSPALDPELR 253

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +++   A  A ++I   G    +FL D      +++E+N 
Sbjct: 254 RKMGEAAIAAARSINYEGAGTVEFLLDRTGG-FYFMEMNT 292


>gi|325093888|gb|EGC47198.1| 3-methylcrotonyl-CoA carboxylase biotin-containing subunit
           [Ajellomyces capsulatus H88]
          Length = 1276

 Score = 92.5 bits (229), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 54/287 (18%), Positives = 101/287 (35%), Gaps = 44/287 (15%)

Query: 13  EVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNV--------------- 57
           E++L  G+  +      G +V+ +  D       A   P  AFN+               
Sbjct: 609 EIALRVGRTASQH----GIRVTTLYTDPDARAQHALSSP-FAFNLGETSAYLDGDRIIEI 663

Query: 58  --------LHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP 106
                   +H  +G   E+           + +      A     DK RSK+++++ GVP
Sbjct: 664 AQKEGCQGIHPGYGFLSENSAFAQKCTQAGLVFIGPPPKAIEAMGDKSRSKEIMTAAGVP 723

Query: 107 VCPSILVNRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
             P    +  +M+           P +IK +KGG   G+ +    ++    L+ + S   
Sbjct: 724 CVPGYHGDNQSMEFLEAEAEKTKFPVLIKAVKGGGGKGMRIASSKETFRDQLISAKSEAM 783

Query: 163 ----GDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
                D +L+E+Y+     +   V  D   +   +            K            
Sbjct: 784 NSFGDDTMLVEKYITTPRHIEVQVFADKHGNCVALGERDCSIQRRHQKIL----EESPAP 839

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +P    K++   A  A  A+G  G    +F+FD  + + F++E+N 
Sbjct: 840 HLPEATRKDIWDKARAAALAVGYEGAGTVEFIFDNDTGEFFFMEMNT 886


>gi|256787590|ref|ZP_05526021.1| acetyl/propionyl CoA carboxylase alpha subunit [Streptomyces
           lividans TK24]
          Length = 655

 Score = 92.5 bits (229), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 43/216 (19%), Positives = 82/216 (37%), Gaps = 14/216 (6%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP----SILVN 114
           +G   E+       E   + +      A AL  DK+R+K+ V + GVPV P    S L +
Sbjct: 91  YGFLAENAGFARACEEAGLVFIGPSADAIALMGDKIRAKETVRAAGVPVVPGSSGSGLTD 150

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQLLIEQ 170
               D+   I  P ++KP  GG   G+ +++    +  ++  +          D LL+E+
Sbjct: 151 EQLADAAREIGTPVLLKPSAGGGGKGMRLVRDTAVLADEIAAARREARASFGDDTLLVER 210

Query: 171 YVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           ++D    +   V+ D    V  +   +        K             +       +  
Sbjct: 211 WIDRPRHIEIQVLADGHGGVVHLGERECSLQRRHQK----VIEEAPSVLLDEATRAAMGE 266

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLS-RKVFWLEINV 264
            A  A ++ G RG    +F+       + +++E+N 
Sbjct: 267 AAVQAARSCGYRGAGTVEFIVPGGDPSQYYFMEMNT 302


>gi|312183629|gb|ADQ42384.1| pyruvate carboxylase subunit A [Methanosaeta harundinacea]
          Length = 495

 Score = 92.5 bits (229), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 37/219 (16%), Positives = 89/219 (40%), Gaps = 18/219 (8%)

Query: 58  LHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS---- 110
           +H  +G   E+       E   + +      +      K+ ++ ++ S GVP+ P     
Sbjct: 78  IHPGYGFLSENPKFARACEEKGVVFIGPTSSSIDRMGSKIAARDIMKSAGVPIVPGSEGG 137

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQL 166
           I      MD    I  P ++KP  GG  +G+ ++ +++ +   L  + S        + +
Sbjct: 138 ISNPAEAMDLVEAIGYPVMLKPAAGGGGIGMKIVWEEKDLAPALDSARSIARSAFSDETV 197

Query: 167 LIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
            IE+Y+ +   +   ++ D+      ++  +        K    + + ++      ++ +
Sbjct: 198 YIEKYLTEPRHIEFQILADSKGKTIYVSDRECSIQRRHQKLIEESPSPIM----TPELRE 253

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           E+  +A  A +AI  R     +F++     + ++LE+N 
Sbjct: 254 EMGSIAVRAAEAIDYRSAGTVEFMYSK--GEYYFLEMNT 290


>gi|319957728|ref|YP_004168991.1| acetyl-CoA carboxylase, biotin carboxylase [Nitratifractor
           salsuginis DSM 16511]
 gi|319420132|gb|ADV47242.1| acetyl-CoA carboxylase, biotin carboxylase [Nitratifractor
           salsuginis DSM 16511]
          Length = 446

 Score = 92.5 bits (229), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 45/224 (20%), Positives = 81/224 (36%), Gaps = 15/224 (6%)

Query: 50  KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109
           + D  F   +G   E+     I E   + +    +    +  DK ++KQV++  GVP  P
Sbjct: 76  ECDAVFPG-YGFLSENQNFVEICEHHGLKFIGPSVEVMQMMADKSKAKQVMAEAGVPTIP 134

Query: 110 S----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN---- 161
                +            I  P ++K   GG   G+ V++ +  I    L   +      
Sbjct: 135 GSDGAVANAEEAKKLAKEIGYPVILKAAAGGGGRGMRVVEDESYIENAFLACEAEAVNAF 194

Query: 162 HGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
               L +E++++    +   VMGD+  +   I            K    +   V    + 
Sbjct: 195 SDGTLYMEKFIEAPRHVEVQVMGDSHGNAIHIGERDCSMQRRHQKLIEESPALV----LD 250

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
               KE+   A  A + IG  G    +FL D      +++E+N 
Sbjct: 251 DARRKELHEAAVRATKHIGYEGAGTFEFLVDKHKN-FYFMEMNT 293


>gi|39944808|ref|XP_361941.1| hypothetical protein MGG_04386 [Magnaporthe oryzae 70-15]
 gi|145021572|gb|EDK05701.1| hypothetical protein MGG_04386 [Magnaporthe oryzae 70-15]
          Length = 1854

 Score = 92.5 bits (229), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 41/235 (17%), Positives = 86/235 (36%), Gaps = 15/235 (6%)

Query: 39  DRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQ 98
              +         D      +G   E+    A +E   + +             K R+++
Sbjct: 712 HSQILEAAKTTGADAVIPG-YGFLAENADFAAKVEEAGLVWIGPTPDQMRDLGLKHRARE 770

Query: 99  VVSSCGVPVCPSILVNRFTMDS---QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
           +  + GVP  P   +   +  +      I  P +IK   GG  +G+ V    +S+  D  
Sbjct: 771 IAQAAGVPTVPGTALLEDSAQAVAEAGRIGFPVMIKSTAGGGGIGLRVSHDAESLKEDYE 830

Query: 156 ----QSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLN 210
                ++S      + +E++V     +   V+GD +  V  +           L+  +  
Sbjct: 831 SVQRLAASNFGDAGVFLERFVQRARHIEVQVLGDGNGAVVTVGE-----RDCSLQRRNQK 885

Query: 211 STHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
                PA  +P ++ + +++ A     A+  R +   +F++D      F+LE+N 
Sbjct: 886 VVEECPAFFVPHEVRQRMRKAAVDLAAAVSYRNVGTVEFIYDVDKEDFFFLEMNT 940


>gi|291484439|dbj|BAI85514.1| acetyl-CoA carboxylase biotin carboxylase subunit [Bacillus
           subtilis subsp. natto BEST195]
          Length = 444

 Score = 92.5 bits (229), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 31/221 (14%), Positives = 83/221 (37%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       +   I +        A    K+ +++ + + GVPV P +  
Sbjct: 77  AIHPGYGLLSENSRFAERCKQENIVFIGPSPDIIAKMGSKIEARKAMEAAGVPVVPGVSE 136

Query: 114 NRFTMDSQHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
           +   +++       I  P ++K   GG  +G+  ++ ++++         +++ +     
Sbjct: 137 SLGDIEAACRTACQIGYPVMLKASAGGGGIGMQRVENEEALKKAYEGNKKRAADFFGDGS 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           + IE+ ++    +   ++ D                   ++          P+  +  ++
Sbjct: 197 MYIEKVIEHARHIEVQLLADQHGHTV-----HLFERDCSVQRRHQKVIEEAPSPFVDDEL 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             ++ + A  A +AIG       +F+ D      ++LE+N 
Sbjct: 252 RMKIGQTAVKAAKAIGYTNAGTIEFIVDQKQN-FYFLEMNT 291


>gi|314922658|gb|EFS86489.1| conserved domain protein [Propionibacterium acnes HL001PA1]
          Length = 123

 Score = 92.5 bits (229), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 33/113 (29%), Positives = 45/113 (39%), Gaps = 2/113 (1%)

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
           G   L   EI  P    Y Y   Y+   +    PA I     +    +A +  + +   G
Sbjct: 7   GTRVLPAVEIR-PVGGVYDYSAMYTGGETRLTAPADISGTAAQTATAMARVVQKELDFSG 65

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           ISR D + D   R V  LE    PGMT  S+ P     AG    E+   +V+D
Sbjct: 66  ISRVDAIVDESGRPV-LLEAGAAPGMTATSLVPVAMKAAGLDLGEVCSRLVDD 117


>gi|289771483|ref|ZP_06530861.1| acetyl/propionyl CoA carboxylase alpha subunit [Streptomyces
           lividans TK24]
 gi|289701682|gb|EFD69111.1| acetyl/propionyl CoA carboxylase alpha subunit [Streptomyces
           lividans TK24]
          Length = 646

 Score = 92.5 bits (229), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 43/216 (19%), Positives = 82/216 (37%), Gaps = 14/216 (6%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP----SILVN 114
           +G   E+       E   + +      A AL  DK+R+K+ V + GVPV P    S L +
Sbjct: 82  YGFLAENAGFARACEEAGLVFIGPSADAIALMGDKIRAKETVRAAGVPVVPGSSGSGLTD 141

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQLLIEQ 170
               D+   I  P ++KP  GG   G+ +++    +  ++  +          D LL+E+
Sbjct: 142 EQLADAAREIGTPVLLKPSAGGGGKGMRLVRDTAVLADEIAAARREARASFGDDTLLVER 201

Query: 171 YVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           ++D    +   V+ D    V  +   +        K             +       +  
Sbjct: 202 WIDRPRHIEIQVLADGHGGVVHLGERECSLQRRHQK----VIEEAPSVLLDEATRAAMGE 257

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLS-RKVFWLEINV 264
            A  A ++ G RG    +F+       + +++E+N 
Sbjct: 258 AAVQAARSCGYRGAGTVEFIVPGGDPSQYYFMEMNT 293


>gi|229822329|ref|YP_002883855.1| Carbamoyl-phosphate synthase L chain ATP-binding [Beutenbergia
           cavernae DSM 12333]
 gi|229568242|gb|ACQ82093.1| Carbamoyl-phosphate synthase L chain ATP-binding [Beutenbergia
           cavernae DSM 12333]
          Length = 704

 Score = 92.5 bits (229), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 41/216 (18%), Positives = 74/216 (34%), Gaps = 14/216 (6%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
           +G   E   +    E   I +         L  DK+ +K  V+  GVPV P         
Sbjct: 93  YGFLSESPALARACERAGIAFVGPSPDVLELMGDKLAAKARVAERGVPVVPGTQAAGLDD 152

Query: 119 DS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQLLIEQ 170
           D+       +  P ++KP  GG   G+ V      +P  L  +          D LL+E+
Sbjct: 153 DALVQAAADLGFPLLVKPSAGGGGKGMAVASSADELPAALASARRIARGSFGDDTLLLER 212

Query: 171 YVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
            V+    +   V+ DA+  V  +   +        K             +   + + +  
Sbjct: 213 LVETPRHIEVQVLADAAGAVVHLGERECTLQRRHQK----VVEEAPSPLLTPAMRERMGA 268

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLS-RKVFWLEINV 264
            A    +++   G    +FL       + F++E+N 
Sbjct: 269 AACDVARSVAYTGAGTVEFLVPADDPDEFFFIEMNT 304


>gi|163784873|ref|ZP_02179646.1| biotin carboxylase [Hydrogenivirga sp. 128-5-R1-1]
 gi|159879859|gb|EDP73590.1| biotin carboxylase [Hydrogenivirga sp. 128-5-R1-1]
          Length = 472

 Score = 92.5 bits (229), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 52/267 (19%), Positives = 96/267 (35%), Gaps = 29/267 (10%)

Query: 21  ACASALEDAGFKVSQID-----VDRSVGLVLAHLKP-DLA----FNVLHGNFG---EDGL 67
           A  S ++  G  V + D         +   L   K  D+A     + +H  +G   E+  
Sbjct: 29  AIYSEVDSKGLWVKKADEAYMIPGDPIKAYLNFYKIVDIARSTGVDAIHPGYGFLSENAD 88

Query: 68  VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHL 123
                E   I +         L  DK++SK+ +   GVPV P     I            
Sbjct: 89  FARYCEKRGIIFIGPKAQHIELFGDKIKSKKAMREAGVPVLPGTDEPITDLEEAKKVAKK 148

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPL----DLLQSSSWNHGDQLLIEQYVD-GIELT 178
           I  P +IK   GG   G+ V+KK+            ++  +     + IE+YV+    + 
Sbjct: 149 IGFPVIIKAAYGGGGRGMRVVKKENEFEELFKSATAEAEKFFGNGAVFIEKYVENPRHIE 208

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQA 237
             V+ D   +V  +            K        + P   +  ++ +E+ R++  +   
Sbjct: 209 VQVIADKYGNVIHLGERDCSIQRRHQK-----VIEIAPSPSLSEEVRRELYRVSVKSMFK 263

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINV 264
           +G   +   +FL D      +++E+N 
Sbjct: 264 LGYESVGTLEFLVDENDN-FYFIEMNT 289


>gi|83414127|dbj|BAE53854.1| D-alanine:D-alanine ligase [Streptococcus sanguinis SK36]
 gi|83414129|dbj|BAE53855.1| D-alanine:D-alanine ligase [Streptococcus sanguinis]
 gi|83414141|dbj|BAE53861.1| D-alanine:D-alanine ligase [Streptococcus sanguinis]
          Length = 96

 Score = 92.5 bits (229), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 30/95 (31%), Positives = 50/95 (52%), Gaps = 2/95 (2%)

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTH 213
              ++ +  ++L+EQ V   E+  G++G+  +  T     V    FY YE KY     T 
Sbjct: 2   LDLAFKYDSRVLVEQGVTAREIEVGLLGNVDVKSTLPGEVVKDVAFYDYEAKYIDNKITM 61

Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
            +PAKIP ++   +++ A  A +A+G  G+SR DF
Sbjct: 62  DIPAKIPEEVVSLMRQNAEAAFRALGGLGLSRCDF 96


>gi|83414203|dbj|BAE53892.1| D-alanine:D-alanine ligase [Streptococcus constellatus]
          Length = 96

 Score = 92.5 bits (229), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 49/96 (51%), Gaps = 2/96 (2%)

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--DVTEIAVPKSDFYSYELKYSSLNST 212
               ++ +  ++LIEQ V+  E+  G++G+      +    V    FY YE KY     T
Sbjct: 1   ALKLAFKYDSRVLIEQGVNAREIEVGLLGNEEAQSSLPGEVVKDVPFYDYEAKYIDNKIT 60

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
             +PAK+  D+   +++ A  A +AIG  G++R DF
Sbjct: 61  MSIPAKLSDDVISTMRQHAEKAFRAIGGVGLARCDF 96


>gi|239944152|ref|ZP_04696089.1| D-alanyl-alanine synthetase A [Streptomyces roseosporus NRRL 15998]
 gi|239990607|ref|ZP_04711271.1| D-alanyl-alanine synthetase A [Streptomyces roseosporus NRRL 11379]
          Length = 197

 Score = 92.5 bits (229), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 42/190 (22%), Positives = 78/190 (41%), Gaps = 10/190 (5%)

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG--I 175
           M  +  +S P  +KP + G+S GI  +     +   +  +++  H   +LIE+ V     
Sbjct: 1   MWQKADMSLPVFVKPARLGASYGISRVTTAHELSDAI--NAAAEHDPVVLIEESVPTPFT 58

Query: 176 ELTCGVMGDASL---DVTEIAVPK-SDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRL 230
           E    ++    +      ++ +P+ ++++    KYS    T    ++    ++   +   
Sbjct: 59  EYEVPIIAGREIVSAPPGQVCLPQAAEWHDTLSKYSLDAETSRTISRTGDAELDSRLMEA 118

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A  A    G    +R D   D    +V+  EIN  PG    S FP +   AG+S    L 
Sbjct: 119 ALAAASLAGVACAARVDLFVDAH-GQVYVGEINALPGQGFNSNFPRIFELAGFSRPRQLE 177

Query: 291 WMVEDASCLR 300
            M++ A   R
Sbjct: 178 LMIDSALFHR 187


>gi|78213772|ref|YP_382551.1| acetyl-CoA carboxylase biotin carboxylase subunit [Synechococcus
           sp. CC9605]
 gi|78198231|gb|ABB35996.1| acetyl-CoA carboxylase, biotin carboxylase [Synechococcus sp.
           CC9605]
          Length = 448

 Score = 92.5 bits (229), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 72/220 (32%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     +     + +      A     DK  +K  + S GVP  P    
Sbjct: 78  AIHPGYGFLAENDKFAEMCRDHGLTFVGPSPHAIRSMGDKSTAKSTMQSVGVPTVPGSEG 137

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSWNHGDQ 165
            +            +  P +IK   GG   G+ ++     +         ++ +      
Sbjct: 138 LLSSTSQAAALAEEMGYPVMIKATAGGGGRGMRLVPDASQLESLYKAAQGEAEAAFGNPG 197

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           L +E+++D    +   V+ D   +V  +            K             +  D+ 
Sbjct: 198 LYLEKFIDRPRHVEVQVLADRHGNVVHLGERDCSIQRRHQKLL----EEAPSPALDPDLR 253

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +   A  A ++I   G    +FL D      +++E+N 
Sbjct: 254 RRMGEAAVAAARSINYEGAGTVEFLLDRSGG-FYFMEMNT 292


>gi|83414193|dbj|BAE53887.1| D-alanine:D-alanine ligase [Streptococcus anginosus]
          Length = 96

 Score = 92.5 bits (229), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 2/96 (2%)

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--DVTEIAVPKSDFYSYELKYSSLNST 212
               ++ +  ++LIEQ V+  E+  G++G+      +    V    FY YE KY     T
Sbjct: 1   ALKLAFKYDSRVLIEQGVNAREIEVGLLGNEEAQSSLPGEVVKDVAFYDYEAKYIDNKIT 60

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
             +PAK+  D+   +++ A  A  A G  G+SR DF
Sbjct: 61  MDIPAKLSEDVIATMRQYAEKAFHAFGGVGLSRCDF 96


>gi|213854615|ref|ZP_03382855.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Typhi str. M223]
 gi|289806172|ref|ZP_06536801.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Typhi str. AG3]
          Length = 69

 Score = 92.5 bits (229), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 1/55 (1%)

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           G++R D        +V   EIN  PG T +S++P++   +G  + +L+  ++E A
Sbjct: 2   GMARVDVFLTA-DNEVVINEINTLPGFTNISMYPKLWQASGLGYTDLISRLIELA 55


>gi|312116104|ref|YP_004013700.1| acetyl-CoA carboxylase, biotin carboxylase [Rhodomicrobium
           vannielii ATCC 17100]
 gi|311221233|gb|ADP72601.1| acetyl-CoA carboxylase, biotin carboxylase [Rhodomicrobium
           vannielii ATCC 17100]
          Length = 446

 Score = 92.5 bits (229), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 46/220 (20%), Positives = 86/220 (39%), Gaps = 18/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            LH  +G   E+     ILE   + +         L  DK+R+K+     G+PV P    
Sbjct: 77  ALHPGYGFLSENARFAEILEEHGVTFIGPTPEHMRLMGDKIRAKETAKELGIPVVPGSGG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGDQ 165
            +  N   +     I  P ++K   GG   G+ V + +  +P+ L     +S +    D 
Sbjct: 137 AVTTNEEAIAIAREIGFPVLVKAAAGGGGRGMKVARTEAELPIALSTARAESKAAFGDDA 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           L +E+Y+     +   V+GD   +   +        S + ++  +      PA +     
Sbjct: 197 LYLERYLSKPRHIEIQVIGDGKGNAVYLGERD---CSLQRRHQKILEETPSPA-LNEAQR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           KE+      A + +  R     +FL+     + F++E+N 
Sbjct: 253 KEIGETVARAMRKLKYRNAGTVEFLY--EDGEFFFIEMNT 290


>gi|118580438|ref|YP_901688.1| acetyl-CoA carboxylase, biotin carboxylase [Pelobacter propionicus
           DSM 2379]
 gi|118503148|gb|ABK99630.1| acetyl-CoA carboxylase carboxyltransferase subunit alpha
           [Pelobacter propionicus DSM 2379]
          Length = 446

 Score = 92.5 bits (229), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 81/220 (36%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---- 109
            +H  +G   E+     I E   I +      +  +  DK+ ++Q V++ GVP+ P    
Sbjct: 77  AIHPGYGFLSENADFAEICEKCGITFIGPSPESMRIMGDKISARQAVTAQGVPILPGTKE 136

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
            +      +     I  P +IK   GG   G+ ++    ++P     + +         +
Sbjct: 137 GVASVDEAITIAKEIGFPVIIKATAGGGGRGMKIVHSQAALPNAFATARAEAQSGFGNPE 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+Y +    +   ++ D   +V  +            K      + +       ++ 
Sbjct: 197 VYIEKYCEHPRHVEIQILADKHGNVIHLGERDCSIQRRHQKLIEEAPSTIS----TPELR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +   A  A  ++G   +   +FL D  +   +++E+N 
Sbjct: 253 AAMGEAAVRAAASVGYNSVGTVEFLVDKENN-FYFMEMNT 291


>gi|77166901|gb|ABA62425.1| D-alanine-D-alanine ligase [Clostridium perfringens]
          Length = 106

 Score = 92.1 bits (228), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 26/110 (23%), Positives = 52/110 (47%), Gaps = 4/110 (3%)

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHV 214
               +  +  +++IE+Y+ G E+TC ++    L V  I  PK  F+    KY    +   
Sbjct: 1   AVLEALKYDTEVMIEEYIKGDEITCPIIDGKMLPVLAIK-PKGKFFDIASKYEDGGADEF 59

Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +  ++   ++KEV+++A   ++ + C   +R D L        + LE+N 
Sbjct: 60  I-VELNEYLHKEVEKMALETYKLLKCDVYARVDMLV--KDNIPYVLEVNT 106


>gi|256818877|ref|YP_003140156.1| acetyl-CoA carboxylase, biotin carboxylase [Capnocytophaga ochracea
           DSM 7271]
 gi|315224251|ref|ZP_07866090.1| acetyl-CoA carboxylase, biotin carboxylase [Capnocytophaga ochracea
           F0287]
 gi|256580460|gb|ACU91595.1| acetyl-CoA carboxylase, biotin carboxylase [Capnocytophaga ochracea
           DSM 7271]
 gi|314945799|gb|EFS97809.1| acetyl-CoA carboxylase, biotin carboxylase [Capnocytophaga ochracea
           F0287]
          Length = 450

 Score = 92.1 bits (228), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 75/220 (34%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     I     I +  +         DK  +K  + + GVP  P    
Sbjct: 77  AIHPGYGFLSENAKFSKICAEHGIKFIGASPEMIEKMGDKASAKATMKAAGVPTVPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS-----SSWNHGD 164
            +            I  P ++K   GG   G+  + K++ +   L  +     +++ +  
Sbjct: 137 LVESLEHAKKIAAEIGYPVMLKATAGGGGRGMRDVWKEEDLEKALNSAMQEAGAAFGNDA 196

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             + +  VD   +   ++GD       ++           K     +       +  D+ 
Sbjct: 197 MYMEKLIVDPRHIEIQIVGDQYGKACHLSERDCSIQRRHQK----LTEETPSPFMTDDLR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K +   A  A + I   G    +FL D   R  +++E+N 
Sbjct: 253 KRMGEAAVKAAEYIKYEGAGTVEFLVDK-DRNFYFMEMNT 291


>gi|260434771|ref|ZP_05788741.1| acetyl-CoA carboxylase, biotin carboxylase [Synechococcus sp. WH
           8109]
 gi|260412645|gb|EEX05941.1| acetyl-CoA carboxylase, biotin carboxylase [Synechococcus sp. WH
           8109]
          Length = 448

 Score = 92.1 bits (228), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 72/220 (32%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     +     + +      A     DK  +K  + S GVP  P    
Sbjct: 78  AIHPGYGFLAENDKFAEMCRDHGLTFVGPSPHAIRSMGDKSTAKSTMQSVGVPTVPGSEG 137

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSWNHGDQ 165
            +            +  P +IK   GG   G+ ++     +         ++ +      
Sbjct: 138 LLSSTSQAAALAEEMGYPVMIKATAGGGGRGMRLVPDASQLESLYKAAQGEAEAAFGNPG 197

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           L +E+++D    +   V+ D   +V  +            K             +  D+ 
Sbjct: 198 LYMEKFIDRPRHVEVQVLADRHGNVVHLGERDCSIQRRHQKLL----EEAPSPALDPDLR 253

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +   A  A ++I   G    +FL D      +++E+N 
Sbjct: 254 RRMGDAAVAAARSINYEGAGTVEFLLDRSGG-FYFMEMNT 292


>gi|194222623|ref|XP_001915631.1| PREDICTED: similar to Methylcrotonoyl-CoA carboxylase subunit
           alpha, mitochondrial precursor (3-methylcrotonyl-CoA
           carboxylase 1) (MCCase subunit alpha)
           (3-methylcrotonyl-CoA:carbon dioxide ligase subunit
           alpha) (3-methylcrotonyl-CoA carboxylase biotin-contai
           [Equus caballus]
          Length = 725

 Score = 92.1 bits (228), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 82/221 (37%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H  +G   E+     + +   I +      A      K  SK ++++ GVPV      
Sbjct: 124 AIHPGYGFLSENVEFAELCKQEGIIFIGPPSSAIRDMGIKSTSKSIMAAAGVPVVEGYHG 183

Query: 113 ---VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
               ++   +    I  P +IK ++GG   G+ +++ ++     L  +          D 
Sbjct: 184 EDQSDQCLKEHAGRIGYPVMIKAVRGGGGKGMRIVRSEKEFQEQLESARREAKKSFSDDA 243

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDI 223
           +LIE++VD    +   V GD   +               ++          P   I  ++
Sbjct: 244 MLIEKFVDTPRHVEVQVFGDHHGNAV-----HLFERDCSVQRRHQKIIEEAPGPGIRPEV 298

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            K++   A  A +A+   G    +F+ D      +++E+N 
Sbjct: 299 RKKLGEAAVRAAKAVNYVGAGTVEFIMDSKHN-FYFMEMNT 338


>gi|124484966|ref|YP_001029582.1| pyruvate carboxylase subunit A [Methanocorpusculum labreanum Z]
 gi|124362507|gb|ABN06315.1| pyruvate carboxylase subunit A [Methanocorpusculum labreanum Z]
          Length = 500

 Score = 92.1 bits (228), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 35/219 (15%), Positives = 76/219 (34%), Gaps = 18/219 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E     A ++     +         +   K+ SKQ +   GVPV P    
Sbjct: 82  AIHPGYGFLAEKAAFSAAVKKAGFTFIGPSEATIKMMGSKLDSKQAMHDAGVPVLPWTQS 141

Query: 114 NRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-----SSSWNHGDQL 166
                       I  P ++K   GG  +G+ ++  +  +   + +     +S++     +
Sbjct: 142 TDHDEAKAFAESIGYPVIVKASAGGGGIGMTIVNNEAELDEAIAKSSRTAASAFG-DSTV 200

Query: 167 LIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
            IE+Y+     +   V  D+  DV  +   +        K             +  ++ +
Sbjct: 201 FIEKYLAKPRHIEVQVFADSKGDVIHMYERECSIQRRHQK----LIEEAPCPIMTDELRE 256

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + + A    +          +FL+D  S   +++E+N 
Sbjct: 257 RMTQSAMTVAKTCNYENAGTVEFLYD--SGNYYFMEMNT 293


>gi|83414133|dbj|BAE53857.1| D-alanine:D-alanine ligase [Streptococcus sanguinis]
 gi|83414139|dbj|BAE53860.1| D-alanine:D-alanine ligase [Streptococcus sanguinis]
          Length = 96

 Score = 92.1 bits (228), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 30/95 (31%), Positives = 50/95 (52%), Gaps = 2/95 (2%)

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTH 213
              ++ +  ++L+EQ V   E+  G++G+  +  T     V    FY YE KY     T 
Sbjct: 2   LDLAFKYDSRVLVEQGVTAREIEVGLLGNVDVKSTLPGEVVKDVAFYDYEAKYIDNKITM 61

Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
            +PAKIP ++   +++ A  A +A+G  G+SR DF
Sbjct: 62  DIPAKIPDEVVSLMRQNAEAAFRALGGLGLSRCDF 96


>gi|116754105|ref|YP_843223.1| pyruvate carboxylase subunit A [Methanosaeta thermophila PT]
 gi|116665556|gb|ABK14583.1| pyruvate carboxylase subunit A [Methanosaeta thermophila PT]
          Length = 499

 Score = 92.1 bits (228), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 84/221 (38%), Gaps = 20/221 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     + E   + +      +      K+ ++Q++   GVP+ P    
Sbjct: 77  AIHPGYGFLAENPAFAKLCEENGVVFIGPSSSSIDAMGSKITARQMMKDAGVPIVPGTER 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS-----SSWNHGD 164
            I       D    I  P +IKP  GG  +G+ ++ + + +   ++ +     S++    
Sbjct: 137 GISDPEEIADVAERIGYPIIIKPAAGGGGIGMKIVDRPEDLAPAVVSAQSIATSAFG-DG 195

Query: 165 QLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            + +E+Y+ +   +   +M D       ++  +        K             +  ++
Sbjct: 196 TVYLEKYLSEPRHIEFQIMADNRGRTVYVSERECSIQRRHQK----LIEEAPSPVMTPEL 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            K +  +A  A +AI  R     +F++       ++LE+N 
Sbjct: 252 RKRMGEIAVKAAKAIRYRSAGTVEFMYSH--GDFYFLEMNT 290


>gi|83415040|dbj|BAE53779.1| D-alanine:D-alanine ligase [Streptococcus sanguinis]
          Length = 96

 Score = 92.1 bits (228), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 30/95 (31%), Positives = 50/95 (52%), Gaps = 2/95 (2%)

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTH 213
              ++ +  ++L+EQ V   E+  G++G+  +  T     V    FY YE KY     T 
Sbjct: 2   LDLAFKYDSRVLVEQGVTAREIEVGLLGNVDVKSTLPGEVVKDVAFYDYEPKYIDNKITM 61

Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
            +PAKIP ++   +++ A  A +A+G  G+SR DF
Sbjct: 62  DIPAKIPEEVVSLMRQNAEAAFRALGGLGLSRCDF 96


>gi|78184000|ref|YP_376435.1| acetyl-CoA carboxylase biotin carboxylase subunit [Synechococcus
           sp. CC9902]
 gi|78168294|gb|ABB25391.1| biotin carboxylase [Synechococcus sp. CC9902]
          Length = 448

 Score = 92.1 bits (228), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 33/220 (15%), Positives = 73/220 (33%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     +     + +      A     DK  +K  +   GVP  P    
Sbjct: 78  AIHPGYGFLAENDKFAEMCNEHGLTFVGPSPHAIRSMGDKSTAKTTMQKVGVPTVPGSEG 137

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSWNHGDQ 165
            +   +        +  P +IK   GG   G+ ++     +         ++ +      
Sbjct: 138 LLSNPQEAAQLAAEMGYPVMIKATAGGGGRGMRLVPSPDQLESLYKAAQGEAEAAFGNPG 197

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           L +E+++D    +   V+ D   +V  +            K             +  ++ 
Sbjct: 198 LYMEKFIDRPRHVEVQVLADRHGNVVHLGERDCSIQRRHQKLL----EEAPSPALDPELR 253

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +++   A  A ++I   G    +FL D      +++E+N 
Sbjct: 254 RKMGEAAIAAARSINYEGAGTVEFLLDRSGG-FYFMEMNT 292


>gi|75906739|ref|YP_321035.1| acetyl-CoA carboxylase biotin carboxylase subunit [Anabaena
           variabilis ATCC 29413]
 gi|75700464|gb|ABA20140.1| acetyl-CoA carboxylase carboxyltransferase subunit alpha [Anabaena
           variabilis ATCC 29413]
          Length = 447

 Score = 92.1 bits (228), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 82/221 (37%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     I     I +      A  L  DK  +K+ +   GVP  P    
Sbjct: 78  AIHPGYGFLSENAKFAEICADHHIAFIGPTPEAIRLMGDKSTAKETMQKAGVPTVPGSEG 137

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS-----IPLDLLQSSSWNHGD 164
            +   +  ++    I  P +IK   GG   G+ +++         +       +++ +  
Sbjct: 138 LVETEQEGLELAKDIGYPVMIKATAGGGGRGMRLVRSPDEFVKLFLAAQGEAGAAFGNAG 197

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            + IE++++    +   ++ D+  +V  +            K             +  D+
Sbjct: 198 -VYIEKFIERPRHIEFQILADSYGNVIHLGERDCSIQRRNQKLL----EEAPSPALDSDL 252

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +++ + A  A Q I   G    +FL D  S + +++E+N 
Sbjct: 253 REKMGQAAVKAAQFINYTGAGTIEFLLD-RSGQFYFMEMNT 292


>gi|116748123|ref|YP_844810.1| carbamoyl-phosphate synthase L chain, ATP-binding [Syntrophobacter
           fumaroxidans MPOB]
 gi|116697187|gb|ABK16375.1| acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha /
           biotin carboxylase [Syntrophobacter fumaroxidans MPOB]
          Length = 477

 Score = 92.1 bits (228), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 38/223 (17%), Positives = 79/223 (35%), Gaps = 21/223 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+ +         + +            +K+ +++++ + G+PV P   +
Sbjct: 76  AIHPGYGFLAENPMFSKKCTDAGLVFVGPPPQVIIDMGNKVVARRIMKNAGIPVIPGTDI 135

Query: 114 -------NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS-----SWN 161
                   +  +D       P ++K + GG   GI V      +   L  +      ++ 
Sbjct: 136 LEEGELGEQDAVDFAEEYGFPIMVKAVAGGGGRGIRVATNVGELIKGLKMARSEARMAFG 195

Query: 162 HGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL 221
           + D  L +   +   +   ++ D   DV  +            K        + PA +P 
Sbjct: 196 NDDIYLEKGLGNPRHVEVQIVADRFGDVIHLGTRNCSIQRRHQKM-----IEIAPASLPA 250

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           D+ + V R A  A +A         +FL D      ++LE+N 
Sbjct: 251 DLSENVCRTAVKAAKACNYVNAGTVEFLLDEADN-YYFLEVNT 292


>gi|193872932|gb|ACF23156.1| D-alanine-D-alanine ligase [Streptococcus oralis]
          Length = 96

 Score = 92.1 bits (228), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 31/96 (32%), Positives = 51/96 (53%), Gaps = 2/96 (2%)

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNST 212
               ++ +  ++L+EQ V+  E+  G++G+  +  T     V    FY Y+ KY +   T
Sbjct: 1   ALELAFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYINNKIT 60

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
             +PAKI  D+   ++R A  A +AIG  G+SR DF
Sbjct: 61  MDIPAKISDDVVAAMRRNAETAFRAIGGLGLSRCDF 96


>gi|239827222|ref|YP_002949846.1| acetyl-CoA carboxylase biotin carboxylase subunit [Geobacillus sp.
           WCH70]
 gi|239807515|gb|ACS24580.1| acetyl-CoA carboxylase, biotin carboxylase [Geobacillus sp. WCH70]
          Length = 450

 Score = 92.1 bits (228), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 80/220 (36%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       E   I +        A    K+ +++ +   GVP+ P I  
Sbjct: 77  AIHPGYGLLSENPEFARRCEEEGIVFIGPKADVIAKMGSKIEARKTMEEAGVPIVPGISF 136

Query: 114 NRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
               +D        I  P ++K   GG  +G+ +++ ++ +         +++S+     
Sbjct: 137 PLKDIDEAAKTAEEIGYPIMLKASAGGGGIGMQIVRNEEELRKAFEGNQKRAASFFGDGA 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+Y+ +   +   ++ D   +   +   +        K             +  +  
Sbjct: 197 MYLEKYIANPRHIEIQLLSDEHGNCIYLWERECSIQRRHQK----VIEEAPSPFLDEETR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +++   A  A + IG       +FL D      ++LE+N 
Sbjct: 253 RKMGETAVKAAKHIGYTNAGTIEFLVDEQKN-FYFLEMNT 291


>gi|38505138|gb|AAR23110.1| 3-methylcrotonyl-CoA carboxylase biotin-containing subunit
           [Emericella nidulans]
 gi|40388397|gb|AAR85468.1| 3-methylcrotonyl-CoA carboxylase biotin-containig subunit
           [Emericella nidulans]
          Length = 723

 Score = 92.1 bits (228), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 54/287 (18%), Positives = 96/287 (33%), Gaps = 44/287 (15%)

Query: 13  EVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNV--------------- 57
           E++L  G+  A      G +V+ +  D       A   P  AFN+               
Sbjct: 50  EIALRVGRTAAQH----GIRVTTLYTDPDSQAQHALSTP-YAFNLGSVSAYLDGDRIIEI 104

Query: 58  --------LHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP 106
                   +H  +G   E+           + +      A     DK  SK ++++ GVP
Sbjct: 105 AKAQGCQGIHPGYGFLSENSEFARKCTEAGLVFIGPPWKAIEDMGDKRCSKHIMTAAGVP 164

Query: 107 VCPSILVNRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
             PS        +        I  P +IK +KGG   G+ + +  +     L  + S   
Sbjct: 165 CVPSYHGENQDPNFLEAEADKIKYPVLIKAIKGGGGKGMRIARSKEEFQAQLQSAKSEAM 224

Query: 163 ----GDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
                D +L+E+Y+     +   V  D   +   +            K            
Sbjct: 225 NSFGDDHVLVEKYITTPRHIEVQVFADKHGNCVALGERDCSIQRRHQKIL----EESPAP 280

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +P    K++   A  A  A+   G    +F+FD  + + F++E+N 
Sbjct: 281 HLPDATRKDIWAKARSAALAVRYEGAGTVEFIFDNDTGEFFFMEMNT 327


>gi|17228434|ref|NP_484982.1| acetyl-CoA carboxylase biotin carboxylase subunit [Nostoc sp. PCC
           7120]
 gi|728782|sp|Q06862|ACCC_ANASP RecName: Full=Biotin carboxylase; AltName: Full=Acetyl-CoA
           carboxylase subunit A; Short=ACC
 gi|289133|gb|AAB51770.1| biotin carboxylase [Anabaena sp.]
 gi|17130285|dbj|BAB72896.1| biotin carboxylase [Nostoc sp. PCC 7120]
          Length = 447

 Score = 92.1 bits (228), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 81/221 (36%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     I     I +      A  L  DK  +K+ +   GVP  P    
Sbjct: 78  AIHPGYGFLSENAKFAEICADHHIAFIGPTPEAIRLMGDKSTAKETMQKAGVPTVPGSEG 137

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS-----IPLDLLQSSSWNHGD 164
            +   +  ++    I  P +IK   GG   G+ +++         +       +++ +  
Sbjct: 138 LVETEQEGLELAKDIGYPVMIKATAGGGGRGMRLVRSPDEFVKLFLAAQGEAGAAFGNAG 197

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            + IE++++    +   ++ D   +V  +            K             +  D+
Sbjct: 198 -VYIEKFIERPRHIEFQILADNYGNVIHLGERDCSIQRRNQKLL----EEAPSPALDSDL 252

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +++ + A  A Q I   G    +FL D  S + +++E+N 
Sbjct: 253 REKMGQAAVKAAQFINYTGAGTIEFLLD-RSGQFYFMEMNT 292


>gi|119489253|ref|ZP_01622060.1| acetyl-CoA carboxylase [Lyngbya sp. PCC 8106]
 gi|119454727|gb|EAW35872.1| acetyl-CoA carboxylase [Lyngbya sp. PCC 8106]
          Length = 451

 Score = 92.1 bits (228), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 79/220 (35%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     I    +I +      A     DK  +K+ +   GVP  P    
Sbjct: 78  AIHPGYGFLAENARFAEICADHDIAFIGPTPEAIRSMGDKSTAKETMQKVGVPTVPGSDG 137

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGDQ 165
            +   +        I  P +IK   GG   G+ ++++   +         ++ +      
Sbjct: 138 LVTNEKEAAKIALQIGYPVIIKATAGGGGRGMRLVREPSELSKQFSAAQGEAEAAFGNPG 197

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E++++    +   ++ D   +V  +            K    +     PA +   + 
Sbjct: 198 VYLEKFIELPRHIEFQILADGHGNVIHLGERDCSIQRRHQKLLEESP---SPA-LSSQLR 253

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +++   A  A Q+I   G    +FL D      +++E+N 
Sbjct: 254 EKMGEAAVKAAQSINYTGAGTVEFLLDKTGN-FYFMEMNT 292


>gi|56368334|emb|CAF02124.1| D-alanine-D-alanine ligase [Oenococcus oeni]
          Length = 147

 Score = 92.1 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 40/145 (27%), Positives = 65/145 (44%), Gaps = 24/145 (16%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVS-QIDVDRSVGLVLAHLKPDLAFNVLHGN 61
           VL G    E E          + L +    +   ID  R++       K D+ F  +HGN
Sbjct: 20  VLFG----EDE------DELLAGLPNKNADIFGPIDSIRNL-------KLDVLFPSVHGN 62

Query: 62  FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV-----NRF 116
            GEDG +  +  L+ IP   SG+ A A+S DK+ +K++++  G+     I++     N+ 
Sbjct: 63  LGEDGTLAGLFRLMNIPNVGSGLRAHAISFDKVITKELMTVNGIRNTKYIVIFQNDKNKP 122

Query: 117 TMDS-QHLISPPYVIKPLKGGSSLG 140
             DS    +     +K    GSS+G
Sbjct: 123 DWDSVSKQLGEVVFVKAANQGSSVG 147


>gi|315105144|gb|EFT77120.1| conserved domain protein [Propionibacterium acnes HL050PA2]
          Length = 123

 Score = 92.1 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 34/113 (30%), Positives = 47/113 (41%), Gaps = 2/113 (1%)

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
           G   L   EI  P    Y Y   Y+   +    PA I     +    +A +  + +   G
Sbjct: 7   GTRVLPAVEIR-PVGGVYDYSAMYTGGETRLTAPADISGTAAQTATAMARVVQKELDFSG 65

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           ISR D + D   R VF LE    PGMT +S+ P     AG    E+   +V+D
Sbjct: 66  ISRVDAIVDESGRPVF-LEAGAAPGMTAISLVPVAMKAAGLDLGEVCSRLVDD 117


>gi|239612092|gb|EEQ89079.1| 3-methylcrotonyl-CoA carboxylase subunit alpha [Ajellomyces
           dermatitidis ER-3]
          Length = 712

 Score = 92.1 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 56/287 (19%), Positives = 100/287 (34%), Gaps = 44/287 (15%)

Query: 13  EVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNV--------------- 57
           E++L  G+  +      G +V+ +  D       A   P  AFN+               
Sbjct: 53  EIALRVGRTASQH----GIRVTTLYTDPDARAQHALSSP-FAFNLGDTSAYLDGDRIIEI 107

Query: 58  --------LHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP 106
                   +H  +G   E+           + +      A     DK RSK+++++ GVP
Sbjct: 108 AKKEGCQGIHPGYGFLSENSAFAQKCTQAGLVFIGPPPKAIEAMGDKSRSKEIMTAAGVP 167

Query: 107 VCPSILVNRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
             P        MD        I  P +IK +KGG   G+ +    ++    L+ + S   
Sbjct: 168 CVPGYHGENQNMDFLEAEAEKIKFPVLIKAVKGGGGKGMRIASSKETFRDQLISAKSEAM 227

Query: 163 ----GDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
                D +L+E+Y+     +   V  D   +   +            K            
Sbjct: 228 NSFGDDTMLVEKYITTPRHIEVQVFADKHGNCVALGERDCSIQRRHQKIL----EESPAP 283

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +P    K++   A  A  A+G  G    +F+FD  + + F++E+N 
Sbjct: 284 HLPEATRKDIWDKARSAALAVGYEGAGTVEFIFDNDTGEFFFMEMNT 330


>gi|83414023|dbj|BAE53802.1| D-alanine:D-alanine ligase [Streptococcus mitis]
 gi|83414027|dbj|BAE53804.1| D-alanine:D-alanine ligase [Streptococcus mitis]
 gi|83415084|dbj|BAE53801.1| D-alanine:D-alanine ligase [Streptococcus mitis]
 gi|193872876|gb|ACF23128.1| D-alanine-D-alanine ligase [Streptococcus mitis]
 gi|193873028|gb|ACF23204.1| D-alanine-D-alanine ligase [Streptococcus mitis]
 gi|193873076|gb|ACF23228.1| D-alanine-D-alanine ligase [Streptococcus mitis]
 gi|193873086|gb|ACF23233.1| D-alanine-D-alanine ligase [Streptococcus mitis]
          Length = 96

 Score = 92.1 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 31/96 (32%), Positives = 51/96 (53%), Gaps = 2/96 (2%)

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNST 212
               ++ +  ++L+EQ V+  E+  G++G+  +  T     V   DFY Y+ KY     T
Sbjct: 1   ALKLAFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVDFYDYDAKYIDNKIT 60

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
             +PAKI  D+   +++ A  A +AIG  G+SR DF
Sbjct: 61  MDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDF 96


>gi|83414029|dbj|BAE53805.1| D-alanine:D-alanine ligase [Streptococcus mitis]
          Length = 96

 Score = 92.1 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 32/96 (33%), Positives = 51/96 (53%), Gaps = 2/96 (2%)

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNST 212
               ++ +  ++L+EQ V+  E+  G++G+  +  T     V   DFY Y+ KY     T
Sbjct: 1   ALKLAFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVDFYDYDAKYIDNKIT 60

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
             +PAKI  D+   ++R A  A +AIG  G+SR DF
Sbjct: 61  MDIPAKISDDVIAVMRRNAETAFRAIGGLGLSRCDF 96


>gi|261202142|ref|XP_002628285.1| 3-methylcrotonyl-CoA carboxylase subunit alpha [Ajellomyces
           dermatitidis SLH14081]
 gi|239590382|gb|EEQ72963.1| 3-methylcrotonyl-CoA carboxylase subunit alpha [Ajellomyces
           dermatitidis SLH14081]
          Length = 713

 Score = 92.1 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 56/287 (19%), Positives = 100/287 (34%), Gaps = 44/287 (15%)

Query: 13  EVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNV--------------- 57
           E++L  G+  +      G +V+ +  D       A   P  AFN+               
Sbjct: 53  EIALRVGRTASQH----GIRVTTLYTDPDARAQHALSSP-FAFNLGDTSAYLDGDRIIEI 107

Query: 58  --------LHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP 106
                   +H  +G   E+           + +      A     DK RSK+++++ GVP
Sbjct: 108 AKKEGCQGIHPGYGFLSENSAFAQKCTQAGLVFIGPPPKAIEAMGDKSRSKEIMTAAGVP 167

Query: 107 VCPSILVNRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
             P        MD        I  P +IK +KGG   G+ +    ++    L+ + S   
Sbjct: 168 CVPGYHGENQNMDFLEAEAEKIKFPVLIKAVKGGGGKGMRIASSKETFRDQLISAKSEAM 227

Query: 163 ----GDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
                D +L+E+Y+     +   V  D   +   +            K            
Sbjct: 228 NSFGDDTMLVEKYITTPRHIEVQVFADKHGNCVALGERDCSIQRRHQKIL----EESPAP 283

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +P    K++   A  A  A+G  G    +F+FD  + + F++E+N 
Sbjct: 284 HLPEATRKDIWDKARSAALAVGYEGAGTVEFIFDNDTGEFFFMEMNT 330


>gi|94497781|ref|ZP_01304348.1| hypothetical protein SKA58_12395 [Sphingomonas sp. SKA58]
 gi|94422830|gb|EAT07864.1| hypothetical protein SKA58_12395 [Sphingomonas sp. SKA58]
          Length = 343

 Score = 92.1 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 45/278 (16%), Positives = 103/278 (37%), Gaps = 15/278 (5%)

Query: 26  LEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLH--GNFGEDGLVQAILELLEIPYTHSG 83
           LE+ G     I V  S   +      D    +L+  G    + +   +L   ++P+  + 
Sbjct: 52  LEEIGLN---IRVADSYESLFDRPDVDFVVTLLNRGGFQNSEMMAPLLLSWRDMPHLGAS 108

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI-SPPYVIKPLKGGSSLGII 142
            +   +S DK  SK + S+ GV   P+ +  R  + ++    +   V+KP    +S G+ 
Sbjct: 109 PILRGVSDDKYLSKMIASAHGVLTMPAQIFRRGGLPAEPAFHAERLVVKPNASSASWGLA 168

Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS-----LDVTEIAVPK- 196
           ++         +       H   +L+E +   +++   V+G +      L          
Sbjct: 169 MVDSWTEARTQIDYLHGEGHD--VLVEAWAPLLDIAVPVVGGSGGQPWILPPMMYVPADP 226

Query: 197 SDFYSYELKYSSLNSTHVLPAKIPL-DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255
               S+E K   +++       +    +  +++ +       +      R +F +DP++ 
Sbjct: 227 HRARSHEEKRGLIDAGDDPLVLVEDRALLAQLEDMTRRLLSDLWPFDYGRFEFRYDPVTG 286

Query: 256 KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            V ++E+N+   +         A   G     L+  ++
Sbjct: 287 AVQFMEVNLSCNLWSKKTISRSARSIGVDHAMLVETII 324


>gi|119183643|ref|XP_001242830.1| hypothetical protein CIMG_06726 [Coccidioides immitis RS]
          Length = 711

 Score = 92.1 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 56/287 (19%), Positives = 101/287 (35%), Gaps = 44/287 (15%)

Query: 13  EVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNV--------------- 57
           E++L  G+         G +V+ +  D       A   P  AFN+               
Sbjct: 53  EIALRVGRTAGQH----GVRVTTLYTDPDASSQHALSSP-FAFNLGETSAYLDGDRIIEI 107

Query: 58  --------LHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP 106
                   +H  +G   E+           + +      A     DK RSK+++++ GVP
Sbjct: 108 AKREGCKGIHPGYGFLSENAGFAQKCTQAGLVFIGPPWKAIEAMGDKSRSKEIMTAAGVP 167

Query: 107 VCPSILVNRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
             P    +    D        I  P +IK +KGG   G+ +    ++    L+ + S + 
Sbjct: 168 CVPGYHGSNQDPDLLQKEADKIGYPVLIKAIKGGGGKGMRICSSRETFQDQLMSAKSESK 227

Query: 163 ----GDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
                DQ+LIE+Y+     +   V  D   +   +            K            
Sbjct: 228 NSFGDDQVLIEKYITTPRHIEVQVFADKHGNCVALGERDCSIQRRHQKIL----EESPAP 283

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +P    K++   A  A  A+G  G    +F+FD  + + +++E+N 
Sbjct: 284 HLPQATRKDIWEKARAAALAVGYEGAGTVEFIFDNDTGEFYFMEMNT 330


>gi|83414201|dbj|BAE53891.1| D-alanine:D-alanine ligase [Streptococcus constellatus]
          Length = 96

 Score = 92.1 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 49/96 (51%), Gaps = 2/96 (2%)

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--DVTEIAVPKSDFYSYELKYSSLNST 212
               ++ +  ++LIEQ V+  E+  G++G+      +    V    FY YE KY     T
Sbjct: 1   ALKLAFKYDSRVLIEQGVNAREIEVGLLGNEEAQSSLPGEVVKDVAFYDYEAKYIDNKIT 60

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
             +PAK+  D+   +++ A  A +AIG  G++R DF
Sbjct: 61  MSIPAKLSDDVISTMRQHAEKAFRAIGGVGLARCDF 96


>gi|320034303|gb|EFW16248.1| 3-methylcrotonyl-CoA carboxylase subunit alpha [Coccidioides
           posadasii str. Silveira]
          Length = 711

 Score = 91.7 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 56/287 (19%), Positives = 101/287 (35%), Gaps = 44/287 (15%)

Query: 13  EVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNV--------------- 57
           E++L  G+         G +V+ +  D       A   P  AFN+               
Sbjct: 53  EIALRVGRTAGQH----GVRVTTLYTDPDASSQHALSSP-FAFNLGETSAYLDGDRIIEI 107

Query: 58  --------LHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP 106
                   +H  +G   E+           + +      A     DK RSK+++++ GVP
Sbjct: 108 AKREGCKGIHPGYGFLSENAGFAQKCTQAGLVFIGPPWKAIEAMGDKSRSKEIMTAAGVP 167

Query: 107 VCPSILVNRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
             P    +    D        I  P +IK +KGG   G+ +    ++    L+ + S + 
Sbjct: 168 CVPGYHGSNQDPDLLQKEADKIGYPVLIKAIKGGGGKGMRICSSRETFQDQLMSAKSESK 227

Query: 163 ----GDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
                DQ+LIE+Y+     +   V  D   +   +            K            
Sbjct: 228 NSFGDDQVLIEKYITTPRHIEVQVFADKHGNCVALGERDCSIQRRHQKIL----EESPAP 283

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +P    K++   A  A  A+G  G    +F+FD  + + +++E+N 
Sbjct: 284 HLPQATRKDIWEKARAAALAVGYEGAGTVEFIFDNDTGEFYFMEMNT 330


>gi|254456861|ref|ZP_05070289.1| hypothetical protein CBGD1_555 [Campylobacterales bacterium GD 1]
 gi|207085653|gb|EDZ62937.1| hypothetical protein CBGD1_555 [Campylobacterales bacterium GD 1]
          Length = 320

 Score = 91.7 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 53/294 (18%), Positives = 103/294 (35%), Gaps = 22/294 (7%)

Query: 20  KACASALEDAGFKVSQIDVDRSVGLV--LAHLKPDLAFNV---LHGNFGEDGLVQAILEL 74
            +   ++      V ++ V +S+  +  +   KPDL       +     ED  +      
Sbjct: 25  NSVLDSINKMDH-VVELTVCKSIEDLESVVQRKPDLVILAVKYIAIKNEEDIWLSEYFAR 83

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--QHLISPPYVIKP 132
             I ++ S         DK+ +K  + S G+              S     I  P  +KP
Sbjct: 84  NNINHSGSLRETLKFDSDKILAKTFLRSKGINTAKYFTAVPGEYKSTYALPIGYPLFLKP 143

Query: 133 LKGGSSLG---IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS--- 186
           L   +  G   + ++         +L S        +L+E+Y+DG E    ++       
Sbjct: 144 LDAANGKGIDNLSIVNSFAEFQSKVL-SLYEIFDTPVLVEEYIDGQEFAIAIIQTKDANL 202

Query: 187 -LDVTEIAVPKS-DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244
            +   E+  P+S        +    + T VL       +   ++ LA  A+  +  R   
Sbjct: 203 LVSALEVIPPESTKALRILGEKVKKDDTEVLRKTEDNFLMDRIKTLAIDAYIDLEIRDYG 262

Query: 245 RSDFLFDPLSRKVFWLEINVQP--GMTPVSIFPEMAA-YAGYSFRELLLWMVED 295
             +   +      F++ IN+ P  G T  S FP         S+ +++  +VE+
Sbjct: 263 LINVKTNKY-GHCFFIGINLTPDIGNTS-SYFPIACEMAHDLSYDQVISLIVEE 314


>gi|224372128|ref|YP_002606500.1| biotin carboxylase [Nautilia profundicola AmH]
 gi|223589513|gb|ACM93249.1| acetyl-CoA carboxylase, biotin carboxylase [Nautilia profundicola
           AmH]
          Length = 444

 Score = 91.7 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 45/225 (20%), Positives = 83/225 (36%), Gaps = 17/225 (7%)

Query: 50  KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109
           + D  F   +G   E+     + +   I +    +       DK ++K+V+   GVPV P
Sbjct: 73  QCDAIFPG-YGFLSENQTFVEVCKAHNIAFIGPSLEVMETMADKSKAKEVMKKAGVPVIP 131

Query: 110 S----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH--- 162
                I            I  P ++K   GG   G+ V++ +  I    L +SS      
Sbjct: 132 GSEGAINSVEEAKKVAKEIGYPVILKAASGGGGRGMRVVEDESYIENAFLAASSEAESAF 191

Query: 163 -GDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-I 219
               + +E+Y++    +   ++GD   +V              L+          PA  +
Sbjct: 192 GDPTIYMEKYIEKPRHVEVQILGDKHGNVI-----HLGERDCSLQRRHQKLIEESPANIL 246

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +  K++   A  A +AIG       +FL D      +++E+N 
Sbjct: 247 DDETRKKLHETAVKAAKAIGYYSAGTIEFLVDKNLN-FYFMEMNT 290


>gi|149378451|ref|ZP_01896142.1| Acetyl/propionyl-CoA carboxylase, alpha subunit [Marinobacter
           algicola DG893]
 gi|149357263|gb|EDM45794.1| Acetyl/propionyl-CoA carboxylase, alpha subunit [Marinobacter
           algicola DG893]
          Length = 667

 Score = 91.7 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 38/234 (16%), Positives = 79/234 (33%), Gaps = 15/234 (6%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
            ++         D      +G   E+       +   + +      A  L   K RSK  
Sbjct: 67  EAIIQAAVQTGADCVHPG-YGFLSENSGFARACKDAGLVFLGPPEAAIELMGSKRRSKIA 125

Query: 100 VSSCGVPVCPSI----LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
           +   GVPV P        +   +++   I  P +IK   GG   G+ ++++   +  +L 
Sbjct: 126 MQEAGVPVVPGFEGDNASDEELINAAENIGYPLMIKASAGGGGRGMRLVEEADELADNLQ 185

Query: 156 QSS-----SWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLN 210
           ++      ++   + +L +  ++   +   V  D   +   +            K     
Sbjct: 186 RARSEAKQAFGDDELILEKAVIEPRHIEIQVFADQHGNAVYLGERDCSVQRRHQK----V 241

Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
                   +  ++ + +   A  A  A G  G    +FL D   R  ++LE+N 
Sbjct: 242 VEEAPSPFVTPELREAMGEAAVKAALACGYEGAGTVEFLVDK-DRNFYFLEMNT 294


>gi|302775620|ref|XP_002971227.1| hypothetical protein SELMODRAFT_171851 [Selaginella moellendorffii]
 gi|300161209|gb|EFJ27825.1| hypothetical protein SELMODRAFT_171851 [Selaginella moellendorffii]
          Length = 736

 Score = 91.7 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 83/221 (37%), Gaps = 14/221 (6%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+           I +      A +L  DK  SK+++S   VPV P    
Sbjct: 112 AIHPGYGFLSENSKFAQACHESGITFIGPSAAAISLMGDKSASKKLMSGANVPVVPGYHG 171

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQS----IPLDLLQSSSWNHGDQ 165
           +  + +        I  P +IKP+ GG   G+ ++         +   L +S++     +
Sbjct: 172 DDQSHELLQSEADRIGYPVLIKPVLGGGGKGMRIVHSRDEFLDSLRSALRESAAAFGDTR 231

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDI 223
           +LIE+Y+     +   V GD         V         ++          PA +   D 
Sbjct: 232 VLIEKYIAQPRHIEVQV-GDFIFGDRFGNVVHLFERDCSVQRRHQKIIEEAPAPLMSDDF 290

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              + + A  A +A+        +F+ D  + + F++E+N 
Sbjct: 291 RNSIGQAAVNAAKAVNYENAGTVEFIVDTATGEFFFMEMNT 331


>gi|298674485|ref|YP_003726235.1| acetyl-CoA carboxylase biotin carboxylase [Methanohalobium
           evestigatum Z-7303]
 gi|298287473|gb|ADI73439.1| acetyl-CoA carboxylase, biotin carboxylase [Methanohalobium
           evestigatum Z-7303]
          Length = 493

 Score = 91.7 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 41/220 (18%), Positives = 80/220 (36%), Gaps = 20/220 (9%)

Query: 58  LHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
           +H  +G   E+       E   I +             K+ ++ ++   GVPV P     
Sbjct: 78  IHPGYGFLSENPEFARECEKRGITFIGPSSDVIEKMGSKISARNIMIDAGVPVVPGTEEP 137

Query: 115 RFT----MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGDQ 165
                  +D    I  P +IK   GG  +G+ ++   +     L     + SS++     
Sbjct: 138 IEDVNTAIDIAESIGFPVIIKASAGGGGIGMKIVHSREDFEKALNSIQSIASSAFG-DST 196

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+YV+    +   ++ D   +   I+  +        K             +  ++ 
Sbjct: 197 VFIEKYVEEPRHIEIQILSDKYGNTIYISDRECSIQRRHQK----LIEEAPSPIMTPELR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           KE+   A  A +AIG       +FL+     + ++LE+N 
Sbjct: 253 KEMGEAAVKAAKAIGYENAGTVEFLYSK--GEFYFLEVNT 290


>gi|297170266|gb|ADI21303.1| biotin carboxylase [uncultured gamma proteobacterium HF0010_09F21]
          Length = 447

 Score = 91.7 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 44/272 (16%), Positives = 88/272 (32%), Gaps = 33/272 (12%)

Query: 18  SGKACASAL-EDAGF-----KVSQIDVDRSVGLVLAHL---------KPDLAFNVLHGNF 62
           S  +  S +  D        +   I    +    L              D  +    G  
Sbjct: 29  SVASVYSTIDRDQKHLKLSDEAICIGPPETKDSYLNEAAIISAAELSGADAIYPGF-GFL 87

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVNRFTM 118
            E+             +        A+  DK+++K++  S  +PV P     I      +
Sbjct: 88  AENASFAEKCRESGFKFIGPDPEVIAIMGDKIKAKELAKSLNIPVVPGYEGEISTENEAI 147

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGDQLLIEQYV-D 173
            +   I  P +IK   GG   G+ V+     +         ++       ++ IE+Y+  
Sbjct: 148 KTVEEIGYPVIIKASAGGGGRGMRVVNSSDELWQSIQSAQNEAELAFGDGKIFIEKYLKK 207

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAF 232
              +   + G+   +   +        S + KY         PA  I     +E+Q L+ 
Sbjct: 208 PRHIEVQIFGNGKGEAVHLFTRD---CSLQRKYQ--KIVEEAPALNIDNQKLEEIQNLSV 262

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            A + +   G    +FL+   +   +++E+N 
Sbjct: 263 EACKKLNYEGAGTIEFLY--ENNDFYFIEMNT 292


>gi|154285674|ref|XP_001543632.1| hypothetical protein HCAG_00678 [Ajellomyces capsulatus NAm1]
 gi|150407273|gb|EDN02814.1| hypothetical protein HCAG_00678 [Ajellomyces capsulatus NAm1]
          Length = 722

 Score = 91.7 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 55/287 (19%), Positives = 102/287 (35%), Gaps = 44/287 (15%)

Query: 13  EVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNV--------------- 57
           E++L  G+  +      G +V+ +  D       A   P  AFN+               
Sbjct: 54  EIALRVGRTASQH----GIRVTTLYTDPDARAQHALSSP-FAFNLGETSAYLDGDRIIEI 108

Query: 58  --------LHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP 106
                   +H  +G   E+           + +      A     DK RSK+++++ GVP
Sbjct: 109 AQKEGCQGIHPGYGFLSENSAFAQKCTQAGLVFIGPPPKAIEAMGDKSRSKEIMTAAGVP 168

Query: 107 VCPSILVNRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
             P    +  +M+        I  P +IK +KGG   G+ +    ++    L+ + S   
Sbjct: 169 CVPGYHGDNQSMEFLEAEAEKIKFPVLIKAVKGGGGKGMRIASSKETFRDQLISAKSEAM 228

Query: 163 ----GDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
                D +L+E+Y+     +   V  D   +   +            K            
Sbjct: 229 NSFGDDTMLVEKYITTPRHIEVQVFADKHGNCVALGERDCSIQRRHQKIL----EESPAP 284

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +P    K++   A  A  A+G  G    +F+FD  + + F++E+N 
Sbjct: 285 HLPEATRKDIWDKARAAALAVGYEGAGTVEFIFDNDTGEFFFMEMNT 331


>gi|309806001|ref|ZP_07700027.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus iners
           LactinV 03V1-b]
 gi|308167604|gb|EFO69757.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus iners
           LactinV 03V1-b]
          Length = 1055

 Score = 91.7 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 46/297 (15%), Positives = 105/297 (35%), Gaps = 38/297 (12%)

Query: 22  CASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ--- 69
           C  AL+  G+K   I         D   S  L    +  +   N++     E  ++Q   
Sbjct: 577 CVKALQKLGYKAIVINSNPETVSTDFSISDKLYFEPITLEDVLNIVDIEKPEGVIIQFGA 636

Query: 70  -------AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDS 120
                  A L+   +    + +     + D+    QV+ + G+     +        +D+
Sbjct: 637 QTAINLAAGLKEHGVKILGTDVEDINRAEDREEFDQVIKNLGLKQPKGLTATTRQGVIDA 696

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +++P        + ++  +  +   L  ++   +   +L++ Y+DG E    
Sbjct: 697 AMKIGYPVLVRPSYVLGGKAMEIVYNEAELEEYLDNNAYITNDHPILVDDYLDGKECDVD 756

Query: 181 VMGDAS---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQ 236
            + D     +      V  +  +S        +S  + P +    DI +++  +      
Sbjct: 757 AISDGVDILIPGIMEHVEHAGVHS-------GDSMAIYPPQSFSDDIQQKICEVTRKLAI 809

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           A+ C+GI    F+       V+ +E+N +   T     P ++   G    ++   ++
Sbjct: 810 ALKCQGIMNIQFIVR--DNDVYVIEVNPRASRT----VPFLSKITGIEMVQVATKII 860



 Score = 73.2 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 50/323 (15%), Positives = 108/323 (33%), Gaps = 48/323 (14%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI---------DVD------------RSVGLV 45
           G ++E + S   G     AL + G++V  +         D +             ++  +
Sbjct: 21  GQAAEFDYS---GTQACLALREEGYEVILVNSNPATIMTDTEIADKVYLEPLTVEALTRI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +    PD     L G  G +  +      IL+ L I    + + +   + D+   K++  
Sbjct: 78  IYQEYPDAILPTLGGQNGLNMALALSKTGILDKLNIELLGTKLKSIEQAEDREEFKKLCK 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G PV PS+ V+     +     I  P +++P       G  +    + +   + +   
Sbjct: 138 QLGEPVPPSLTVHNAEDALAFAEKIGYPIIVRPAFTMGGTGGGICNNRKELATVVARGLD 197

Query: 160 WNHGDQLLIEQYVDG---IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216
            +   + LIE+ + G   IE         +  +            +     + +S    P
Sbjct: 198 LSPVTECLIEKSIAGYKEIEFEVMRDCTDNCMIVCCMENFDPVGIH-----TGDSIVFSP 252

Query: 217 AK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV-------QPGM 268
           ++ +    Y+ ++  +    +A+   G        +P S     +E+N            
Sbjct: 253 SQTLSDKEYQMLRDCSLNLIRALKIEGGCNVQLALNPNSFDYDVIEVNPRVSRSSALASK 312

Query: 269 TPVSIFPEMAA--YAGYSFRELL 289
                  +MAA    G +  E++
Sbjct: 313 ATGYPIAKMAAKIAVGMTLDEII 335


>gi|300856883|ref|YP_003781867.1| pyruvate carboxylase [Clostridium ljungdahlii DSM 13528]
 gi|300436998|gb|ADK16765.1| pyruvate carboxylase [Clostridium ljungdahlii DSM 13528]
          Length = 1145

 Score = 91.7 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 39/243 (16%), Positives = 88/243 (36%), Gaps = 24/243 (9%)

Query: 35  QIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSM 91
            +D+D  + + L     D     +H  +G   E+  +    +   I +         +  
Sbjct: 64  YLDIDEIIDIALKK-NVD----AIHPGYGFLSENPELAKKCKEAGIEFIGPTSDMMEMLG 118

Query: 92  DKMRSKQVVSSCGVPVCPSIL----VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147
           DK++SK V    GVP  P +          +        P +IK   GG   G+ +++++
Sbjct: 119 DKIKSKIVAQKAGVPTIPGVQEAIKTEEEALKFAKFCGYPVMIKAADGGGGRGMRIVREE 178

Query: 148 QSIPL----DLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSY 202
           + +         +S      +++ IE+Y++    +   V+GD   ++  +          
Sbjct: 179 KDLVESYNSAKNESRKAFGSEKIYIEKYIESPKHIEVQVLGDKYGNIVHLYERDCSIQRR 238

Query: 203 ELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
             K          P+  +  +  +++   A    + +G       +FL D      +++E
Sbjct: 239 HQK-----VIEFTPSLALSEEKRQQICEDALKIARTVGYTSAGTLEFLVDKNGNH-YFIE 292

Query: 262 INV 264
           +N 
Sbjct: 293 MNT 295


>gi|156742904|ref|YP_001433033.1| carbamoyl-phosphate synthase L chain ATP-binding [Roseiflexus
           castenholzii DSM 13941]
 gi|156234232|gb|ABU59015.1| Carbamoyl-phosphate synthase L chain ATP-binding [Roseiflexus
           castenholzii DSM 13941]
          Length = 484

 Score = 91.7 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 48/225 (21%), Positives = 92/225 (40%), Gaps = 24/225 (10%)

Query: 56  NVLHGNFG---EDGLV-QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           N +H  +G   E+    Q +++   + +         +  DK+++K++     VP  P I
Sbjct: 79  NAIHPGWGFLAENADFAQKVID-AGLIWIGPQPDVIRMMGDKIQAKEIARRSNVPTIPGI 137

Query: 112 -------LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH-- 162
                   +  +  D    I+ P +IK   GG   G++ +     IP+ L Q+ S     
Sbjct: 138 ENVTSAGQITDWMRDQD--IAFPIMIKAASGGGGKGMVRVDTPDQIPVALAQARSEAKKA 195

Query: 163 --GDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI 219
              D +L+E+Y++ G  +   V+ D    V  +   +        K          P+ +
Sbjct: 196 FGDDTVLVEKYIEHGRHIEVQVVADEHRHVVHLFERECTLQRRNQK-----IIEEAPSTL 250

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             D+ +E+   A    + IG       +FLFDP ++  ++LE+N 
Sbjct: 251 ENDLRQEICVTAARLMRRIGYTSAGTVEFLFDPATQSFYFLEVNT 295


>gi|83414143|dbj|BAE53862.1| D-alanine:D-alanine ligase [Streptococcus sanguinis]
          Length = 96

 Score = 91.7 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 30/95 (31%), Positives = 51/95 (53%), Gaps = 2/95 (2%)

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTH 213
              ++ +  ++L+EQ V   E+  G++G+  +  T     V    FY YE KY     T 
Sbjct: 2   LDLAFKYDSRVLVEQGVTAREIEVGLLGNVDVKSTLPGEVVKDVAFYDYEAKYIDNKITM 61

Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
            +PAKIP ++   +++ A +A +A+G  G+SR DF
Sbjct: 62  DIPAKIPEEVVSLMRQNAEVAFRALGGLGLSRCDF 96


>gi|83414137|dbj|BAE53859.1| D-alanine:D-alanine ligase [Streptococcus sanguinis]
          Length = 96

 Score = 91.7 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 27/95 (28%), Positives = 50/95 (52%), Gaps = 2/95 (2%)

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTH 213
              ++ +  ++L+EQ V   E+  G++G+A +  +     V    FY Y+ KY     T 
Sbjct: 2   LDLAFKYDSRVLVEQGVTAREIEVGLLGNADVKSSLPGEVVKDVAFYDYQAKYIDNKITM 61

Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
            +PA++P  +   +++ A  A +A+G  G+SR DF
Sbjct: 62  DIPAQLPEGVVNTMRQNAETAFRALGGLGLSRCDF 96


>gi|120555718|ref|YP_960069.1| carbamoyl-phosphate synthase L chain, ATP-binding [Marinobacter
           aquaeolei VT8]
 gi|120325567|gb|ABM19882.1| Carbamoyl-phosphate synthase L chain, ATP-binding protein
           [Marinobacter aquaeolei VT8]
          Length = 652

 Score = 91.7 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 43/220 (19%), Positives = 81/220 (36%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      ++   + +      A  L   K RSK  +   GVPV P    
Sbjct: 77  CIHPGYGFLSENSGFAKAVKQAGLTFVGPPENAIELMGSKRRSKIAMQEAGVPVVPGYEG 136

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
           N  + D    +   I  P ++K   GG   G+ +++ +  +  ++ ++ S        D+
Sbjct: 137 NNASDDELIAAAQDIDYPLMLKASAGGGGRGMRLVESESELANNIKRARSEAKQAFGDDE 196

Query: 166 LLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           L+IE+  ++   +   V  D   +   +            K             +  ++ 
Sbjct: 197 LIIEKAVIEPRHVEIQVFADHHGNAVYLGERDCSVQRRHQK----VVEEAPSPFVTPELR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K +   A  A  A G  G    +FL D   R  ++LE+N 
Sbjct: 253 KAMGEAAVKAALACGYEGAGTVEFLVDK-DRNFYFLEMNT 291


>gi|327352746|gb|EGE81603.1| 3-methylcrotonyl-CoA carboxylase subunit alpha [Ajellomyces
           dermatitidis ATCC 18188]
          Length = 724

 Score = 91.7 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 56/287 (19%), Positives = 100/287 (34%), Gaps = 44/287 (15%)

Query: 13  EVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNV--------------- 57
           E++L  G+  +      G +V+ +  D       A   P  AFN+               
Sbjct: 53  EIALRVGRTASQH----GIRVTTLYTDPDARAQHALSSP-FAFNLGDTSAYLDGDRIIEI 107

Query: 58  --------LHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP 106
                   +H  +G   E+           + +      A     DK RSK+++++ GVP
Sbjct: 108 AKKEGCQGIHPGYGFLSENSAFAQKCTQAGLVFIGPPPKAIEAMGDKSRSKEIMTAAGVP 167

Query: 107 VCPSILVNRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
             P        MD        I  P +IK +KGG   G+ +    ++    L+ + S   
Sbjct: 168 CVPGYHGENQNMDFLEAEAEKIKFPVLIKAVKGGGGKGMRIASSKETFRDQLISAKSEAM 227

Query: 163 ----GDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
                D +L+E+Y+     +   V  D   +   +            K            
Sbjct: 228 NSFGDDTMLVEKYITTPRHIEVQVFADKHGNCVALGERDCSIQRRHQKIL----EESPAP 283

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +P    K++   A  A  A+G  G    +F+FD  + + F++E+N 
Sbjct: 284 HLPEATRKDIWDKARSAALAVGYEGAGTVEFIFDNDTGEFFFMEMNT 330


>gi|170745402|ref|YP_001766859.1| D-alanine-D-alanine ligase and related ATP-grasp protein-like
           protein [Methylobacterium radiotolerans JCM 2831]
 gi|170659003|gb|ACB28057.1| D-alanine-D-alanine ligase and related ATP-grasp protein-like
           protein [Methylobacterium radiotolerans JCM 2831]
          Length = 359

 Score = 91.7 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 62/314 (19%), Positives = 118/314 (37%), Gaps = 32/314 (10%)

Query: 6   GGISSEREVSLSSGKA--CASALEDAGFKVSQIDVDRSVGLVL-------AHLKPDLAFN 56
           G  S+E    LS G+A    + L  AGF+    D +R+             H    L +N
Sbjct: 42  GDRSTEY---LSDGEANQLLTGLRSAGFRTRYFDGERAFIEQTLTDPTLGTHGPRLLVYN 98

Query: 57  VLHGN--FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
           +       G   LV A   L  I   +S     +L+ +K+    ++   G+ V  S    
Sbjct: 99  IAQSGTDAGRKSLVPAFCALQGIATCNSNAYVVSLARNKLHVHSILKRFGLSVPDSWSYQ 158

Query: 115 R---FTMDSQHLISPPYVIKPLKGGSSLGI---IVIKKDQSIPLDLLQSSSWNHGDQLLI 168
               + +  +       + K +   +S+G+    + +        L + S       + +
Sbjct: 159 AGSGWLLGRRPSGDATLIAKAIHESASIGLDGDSIGRAGAEYETMLARKSR-TLRQAMFV 217

Query: 169 EQYVDGIELT---------CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI 219
           ++ V G E+            V+G A + +       S    Y+   +  +  + +P   
Sbjct: 218 QRLVAGREMETPVVRVGGQVHVLGPAIVTLGGTDHLGSRILDYDS-VAHDDYGYAVPGPA 276

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279
              +  +V+R+A  A++ +G  G +R DF  D   R  F +++   P +   S +  +  
Sbjct: 277 EAPVVAKVRRVAAAAYETLGLEGFARVDFRVDDAGR-PFVIDVATSPHLVWHSAYAHVFR 335

Query: 280 YAGYSFRELLLWMV 293
            AG+   E+L  MV
Sbjct: 336 AAGWGHEEMLACMV 349


>gi|296421031|ref|XP_002840070.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295636281|emb|CAZ84261.1| unnamed protein product [Tuber melanosporum]
          Length = 381

 Score = 91.7 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 48/227 (21%), Positives = 92/227 (40%), Gaps = 24/227 (10%)

Query: 92  DKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS-------PPYVIKPLKGGSSLGIIVI 144
           DK  + +++   G  +  S L+   +  S  L+S        P ++KP++G  S G+ +I
Sbjct: 128 DKAFTNKLLQRHGFSIPKSWLLEGDSGRSIELLSQLIYDLPYPVIVKPVRGRGSEGVQLI 187

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA-----SLDVTEIAVPKSDF 199
               S+ LD L    +   D LLIE++++G E T  V+ D      +L + +     +  
Sbjct: 188 DGFVSM-LDTLDDL-FKTYDVLLIEEFLEGEEGTVTVVPDGQGRFVALPIVQRFGQVAGV 245

Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF-DPLSRKVF 258
             +        ++ VLP       ++  +     A + +    I+R D    D    K F
Sbjct: 246 MPWNGHVPVTTNSTVLPVGEEDLWHRAAKIECQKAAELLKLTSITRIDIRRKDENGGKFF 305

Query: 259 WLEINVQPGMTPV---------SIFPEMAAYAGYSFRELLLWMVEDA 296
             ++N +P +T           S+    A   G+ +  L+   ++ A
Sbjct: 306 LFDVNPKPNLTGTGRPGRDSQDSLCAMAAREFGWEYPALVRKCIDAA 352


>gi|294650425|ref|ZP_06727787.1| urea carboxylase [Acinetobacter haemolyticus ATCC 19194]
 gi|292823696|gb|EFF82537.1| urea carboxylase [Acinetobacter haemolyticus ATCC 19194]
          Length = 1201

 Score = 91.7 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 40/258 (15%), Positives = 90/258 (34%), Gaps = 32/258 (12%)

Query: 56  NVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
           N +H  +G   E+     + E   I +             K  ++++     VP+ P   
Sbjct: 76  NAIHPGYGFLSENADFCDLCESQGIAFIGPNSAQMRAFGLKHTARELAIEANVPLLPGSQ 135

Query: 113 VNRFTMDS---QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
           +     ++      I  P ++K   GG  +G+ ++   + +          + +      
Sbjct: 136 LLADEAEALVEAERIGYPVMLKSTAGGGGIGMRLVWNAEELKDAFATVSYLAQANFKDAG 195

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           L +E++V +   +   + GD    V  +           ++  +       PA  +    
Sbjct: 196 LYLEKFVQNARHIEVQIFGDGQGQVLALGE-----RDCSVQRRNQKVIEETPAPHLNDQQ 250

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283
              +Q +A    Q++  R     +F+ D  ++  ++LE+N             +    G 
Sbjct: 251 RSYIQTVAIQLMQSVNYRSAGTVEFVMDTDTQDFYFLEVNT-----------RLQVEHGV 299

Query: 284 S---FR-ELLLWMVEDAS 297
           +   +  +L+ WMV  AS
Sbjct: 300 TEQVYGVDLVEWMVTLAS 317


>gi|330998095|ref|ZP_08321923.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Paraprevotella
           xylaniphila YIT 11841]
 gi|329569184|gb|EGG50975.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Paraprevotella
           xylaniphila YIT 11841]
          Length = 503

 Score = 91.7 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 51/243 (20%), Positives = 94/243 (38%), Gaps = 22/243 (9%)

Query: 34  SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDK 93
           S +++DR +  V A  K D      +G   E+       E   I +            DK
Sbjct: 59  SYLNIDR-IIEVAAKCKADAVHPG-YGFLSENAEFVRRCEAAGIIFIGPTADTMEAMGDK 116

Query: 94  MRSKQVVSSCGVPVCPSILVNRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQS 149
           + ++Q + + GVPV P         D        I  P ++K   GG   G+ +I  +  
Sbjct: 117 IAARQRMMAAGVPVVPGTAEPLKDADEAVRICKEIGFPVMLKASMGGGGKGMRLIHSEDE 176

Query: 150 IPLDLLQSSSWNH----GDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYEL 204
           +      + S +      D + +E++V+    +   ++GDA  +V  +       +  E 
Sbjct: 177 VKEAYDSARSESMSSFGDDTVYLEKFVEEPHHIEFQILGDAHGNVVHL-------FDREC 229

Query: 205 KYSSLNSTHVLPAK---IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
                N   V  +    +  ++ +E+   A  A +A+  RG    +FL D   R  ++LE
Sbjct: 230 SVQRRNQKIVEESPSPFLTPELRREMGEKAVAAARAVNYRGAGTIEFLVDKY-RHFYFLE 288

Query: 262 INV 264
           +N 
Sbjct: 289 MNT 291


>gi|289705172|ref|ZP_06501575.1| carbamoyl-phosphate synthase L chain, ATP binding domain protein
           [Micrococcus luteus SK58]
 gi|289558116|gb|EFD51404.1| carbamoyl-phosphate synthase L chain, ATP binding domain protein
           [Micrococcus luteus SK58]
          Length = 712

 Score = 91.7 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 46/227 (20%), Positives = 86/227 (37%), Gaps = 24/227 (10%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      L+   I +    + +     DK+R+K+ V++  VPV P I  
Sbjct: 87  AVHPGYGFLSENADFARALDAAGIVFVGPPVGSLDAMADKIRAKETVAAYDVPVVPGIQD 146

Query: 112 --LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
             L +         +  P +IKP  GG   G++ ++  + +   L  +          D 
Sbjct: 147 PTLTDEQITAEAERVGFPLLIKPSAGGGGKGMVAVRAAEELSGALASARRTARSAFGDDT 206

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI----- 219
           LL+E+ +     +   V  DA      +   +        K          PA +     
Sbjct: 207 LLLERLITAPRHIEVQVFADAHGATVHLGERECSLQRRHQK-----VIEEAPAPLLTGLA 261

Query: 220 -PLDIYKEVQRLAFLAHQAIGCRGISRSDFLF-DPLSRKVFWLEINV 264
              ++ + + R A  A  ++G RG    +FL  D    + F++E+N 
Sbjct: 262 HGAELRERLGRAAVDAAVSVGYRGAGTVEFLVSDENPDEFFFMEMNT 308


>gi|260427525|ref|ZP_05781504.1| pyruvate carboxylase [Citreicella sp. SE45]
 gi|260422017|gb|EEX15268.1| pyruvate carboxylase [Citreicella sp. SE45]
          Length = 1147

 Score = 91.7 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 80/221 (36%), Gaps = 18/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       +   I +            DK  +++V  + GVPV P+  V
Sbjct: 80  AIHPGYGLLSENPEFVDACDAAGITFIGPRAETMRALGDKASARKVAVAAGVPVIPATEV 139

Query: 114 NRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-----SSSWNHGD 164
                D+       I  P ++K   GG   G+  I   + +   +L+      +++ +G+
Sbjct: 140 LGDDFDAIAKEAEEIGYPLMLKASWGGGGRGMRPINNAKELKEKVLEGRREAEAAFGNGE 199

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
             L +  +    +   ++GD   ++  +           ++  +       PA  +    
Sbjct: 200 GYLEKMIIRARHVEVQILGDKQGNIYHLYE-----RDCSVQRRNQKVVERAPAPYLSEAQ 254

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +E+  L       +        +FL D  + K +++E+N 
Sbjct: 255 REELCELGRKICAHVNYECAGTVEFLMDMETGKFYFIEVNP 295


>gi|194379850|dbj|BAG58277.1| unnamed protein product [Homo sapiens]
          Length = 474

 Score = 91.7 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 44/228 (19%), Positives = 83/228 (36%), Gaps = 22/228 (9%)

Query: 47  AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP 106
             + P   F   H  F E      + +   I +      A      K  SK ++++ GVP
Sbjct: 76  QAIHPGCGFLSEHMEFAE------LCKQEGIIFIGPPPSAIRDMGIKSTSKSIMAAAGVP 129

Query: 107 VCPSIL----VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
           V          ++   +    I  P +IK ++GG   G+ +++ +Q     L  +     
Sbjct: 130 VVEGYHGEDQSDQCLKEHARRIGYPVMIKAVRGGGGKGMRIVRSEQEFQEQLESARREAK 189

Query: 163 ----GDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
                D +LIE++VD    +   V GD   +   +           ++          PA
Sbjct: 190 KSFNDDAMLIEKFVDTPRHIEVQVFGDHHGNAVYL-----FERDCSVQRRHQKIIEEAPA 244

Query: 218 K-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             I  ++ K++   A  A +A+   G    +F+ D       ++E+N 
Sbjct: 245 PGIKSEVRKKLGEAAVRAAKAVNYVGAGTVEFIMDSKHN-FCFMEMNT 291


>gi|269964397|ref|ZP_06178639.1| putative acyl-CoA carboxylase alpha chain [Vibrio alginolyticus
           40B]
 gi|269830894|gb|EEZ85111.1| putative acyl-CoA carboxylase alpha chain [Vibrio alginolyticus
           40B]
          Length = 682

 Score = 91.3 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 83/221 (37%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+  +      + I +      A      K ++K ++S   VP+ P    
Sbjct: 77  AIHPGYGFLSENPKLAKACSEIGIVFIGPSTSAIEAMGSKSQAKAIMSEANVPLVPGYHG 136

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
              +++        I  P ++K  +GG   G+ V+     +PL +     ++ S     Q
Sbjct: 137 TDNSVEHLLAEAEKIGYPVMLKATQGGGGKGMRVVNSAAEMPLAIDGAQREALSSFGDKQ 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           LLIE+ +     +   V  D   +   ++           K          PA  +  ++
Sbjct: 197 LLIEKCILQPRHVEVQVFADQHGNCVYLSDRDCSIQRRHQK-----VVEEAPAPGLSDEL 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            K++   A  A QAI   G    +FL D    + +++E+N 
Sbjct: 252 RKQMGEAAVQAAQAIDYVGAGTVEFLLDSR-GEFYFMEMNT 291


>gi|262375923|ref|ZP_06069154.1| urea carboxylase [Acinetobacter lwoffii SH145]
 gi|262309017|gb|EEY90149.1| urea carboxylase [Acinetobacter lwoffii SH145]
          Length = 1199

 Score = 91.3 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 33/233 (14%), Positives = 79/233 (33%), Gaps = 13/233 (5%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
             +     +   +  F   +G   E        E   I +             K R++++
Sbjct: 64  EKLIAAAKNTGAEAIFPG-YGFLSESADFARACEENNIAFMGPTPEQILEFGLKHRAREL 122

Query: 100 VSSCGVPVCPSI-LVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL- 155
            ++  VP+ P   L+N     +     I  P ++K   GG  +G+      +++      
Sbjct: 123 AAAANVPMTPGTGLLNSLDEALAEAEKIGYPIMLKSTAGGGGIGLTRCDDAEALREAYES 182

Query: 156 ---QSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
                  +     + +E+++D    +   + GD    V  +            K      
Sbjct: 183 VKRLGEQFFKDAGVFLERFIDKARHVEVQIFGDGQGQVVALGERDCSLQRRNQK----VV 238

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
                A++P    +++ + A    +++  R     +F++D    + ++LE+N 
Sbjct: 239 EETPAAQLPEATRQKLHQAAVELGKSVKYRSAGTVEFIYDAARDEFYFLEVNT 291


>gi|83415058|dbj|BAE53788.1| D-alanine:D-alanine ligase [Streptococcus anginosus]
          Length = 96

 Score = 91.3 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 48/96 (50%), Gaps = 2/96 (2%)

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNST 212
               ++ +  ++LIEQ V+  E+  G++G+     +     V    FY YE KY     T
Sbjct: 1   ALELAFKYDSRVLIEQGVNAREIEVGLLGNEGAKSSLPGEVVKDVAFYDYEAKYIDNKIT 60

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
             +PAK+  D+   +++ A  A  AIG  G++R DF
Sbjct: 61  IDIPAKLSEDVIATMRQYAEKAFHAIGGVGLARCDF 96


>gi|116073803|ref|ZP_01471065.1| acetyl-CoA carboxylase [Synechococcus sp. RS9916]
 gi|116069108|gb|EAU74860.1| acetyl-CoA carboxylase [Synechococcus sp. RS9916]
          Length = 447

 Score = 91.3 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 71/220 (32%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     +     I +      A     DK  +K  +   GVP  P    
Sbjct: 78  AIHPGYGFLAENDRFAEMCRDHGITFVGPSPHAIRSMGDKATAKSTMQRVGVPTVPGSEG 137

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGDQ 165
            +            +  P +IK   GG   G+ ++     +         ++ +      
Sbjct: 138 LLSTPDDAAALAEEMGYPVMIKATAGGGGRGMRLVPGPDQLHTLFKAAQGEAEAAFGNPG 197

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           L +E+++D    +   V+ D   +V  +            K             +  ++ 
Sbjct: 198 LYMEKFIDRPRHVEVQVLADRHGNVVHLGERDCSIQRRHQKLL----EEAPSPALDPELR 253

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +   A  A ++I   G    +FL D      +++E+N 
Sbjct: 254 RRMGEAAVAAARSIQYEGAGTVEFLLDRSGG-FYFMEMNT 292


>gi|148653455|ref|YP_001280548.1| acetyl-CoA carboxylase, biotin carboxylase [Psychrobacter sp.
           PRwf-1]
 gi|148572539|gb|ABQ94598.1| biotin carboxylase / acetyl-coenzyme A carboxylase carboxyl
           transferase subunit alpha [Psychrobacter sp. PRwf-1]
          Length = 449

 Score = 91.3 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 87/221 (39%), Gaps = 21/221 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+      +E   I +         L  +K+ +   +   GVP  P    
Sbjct: 77  AIHPGYGFLAENAEFAESIEDAGIIFVGPHPDHIRLMGNKVSAINAMKQAGVPTVPGSVG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK----DQSIPLDLLQSSSWNHGDQ 165
            + +N    +    I  P +IK   GG   G+ ++++    ++ +     ++  W   D 
Sbjct: 137 TVTLNNAE-EQAKNIGFPLLIKAAAGGGGRGMRIVERFDQLNEQVQAAKQEAELWFGDDS 195

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDI 223
           + +E+Y+ +   +   V+GD + +   +           L+          PA  IP DI
Sbjct: 196 VYMERYLQNPRHIEVQVLGDGNGNAIHLY-----DRDCSLQRRHQKVLEEAPAPDIPDDI 250

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + + +    A + IG RG    +FLF     + F++E+N 
Sbjct: 251 REPILQACVKACETIGYRGAGTFEFLF--EDGEFFFIEMNT 289


>gi|83415062|dbj|BAE53790.1| D-alanine:D-alanine ligase [Streptococcus constellatus]
          Length = 96

 Score = 91.3 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 28/96 (29%), Positives = 48/96 (50%), Gaps = 2/96 (2%)

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNST 212
               ++ +  ++LIEQ V+  E+  G++G+     +     V    FY Y+ KY     T
Sbjct: 1   ALELAFKYDSRVLIEQGVNAREIEVGLLGNEGAKSSWPGEVVKDVAFYDYQAKYIDNKIT 60

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
             +PAK+  D+   +++ A  A  AIG  G++R DF
Sbjct: 61  MDIPAKLSEDVIVTMRQYAEKAFHAIGGVGLARCDF 96


>gi|303319957|ref|XP_003069978.1| Carbamoyl-phosphate synthase L chain, ATP binding domain containing
           protein [Coccidioides posadasii C735 delta SOWgp]
 gi|240109664|gb|EER27833.1| Carbamoyl-phosphate synthase L chain, ATP binding domain containing
           protein [Coccidioides posadasii C735 delta SOWgp]
          Length = 711

 Score = 91.3 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 56/287 (19%), Positives = 101/287 (35%), Gaps = 44/287 (15%)

Query: 13  EVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNV--------------- 57
           E++L  G+         G +V+ +  D       A   P  AFN+               
Sbjct: 53  EIALRVGRTAGQH----GVRVTTLYTDPDASSQHALSSP-FAFNLGETSAYLDGDRIIEI 107

Query: 58  --------LHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP 106
                   +H  +G   E+           + +      A     DK RSK+++++ GVP
Sbjct: 108 AKREGCKGIHPGYGFLSENAGFAQKCTQAGLVFIGPPWKAIEAMGDKSRSKEIMTAAGVP 167

Query: 107 VCPSILVNRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
             P    +    D        I  P +IK +KGG   G+ +    ++    L+ + S + 
Sbjct: 168 CVPGYHGSNQDPDLLQKEADKIGYPVLIKAIKGGGGKGMRICSSRETFQDKLMSAKSESK 227

Query: 163 ----GDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
                DQ+LIE+Y+     +   V  D   +   +            K            
Sbjct: 228 NSFGDDQVLIEKYITTPRHIEVQVFADKHGNCVALGERDCSIQRRHQKIL----EESPAP 283

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +P    K++   A  A  A+G  G    +F+FD  + + +++E+N 
Sbjct: 284 HLPQATRKDIWEKARAAALAVGYEGAGTVEFIFDNDTGEFYFMEMNT 330


>gi|326331090|ref|ZP_08197388.1| acetyl-/propionyl-coenzyme A carboxylase subunit alpha
           [Nocardioidaceae bacterium Broad-1]
 gi|325951131|gb|EGD43173.1| acetyl-/propionyl-coenzyme A carboxylase subunit alpha
           [Nocardioidaceae bacterium Broad-1]
          Length = 1838

 Score = 91.3 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 43/214 (20%), Positives = 71/214 (33%), Gaps = 13/214 (6%)

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVNR 115
           G   ED     + + L + +      A     DK+ SK +    GVPV P     +    
Sbjct: 92  GFVAEDPAFAELCDRLGVTFIGPSAEAMRKLGDKIGSKLIAEEVGVPVAPWSRGGVDTLE 151

Query: 116 FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGDQLLIEQ 170
             + S   I  P ++K   GG   GI  +     +             ++  G   L + 
Sbjct: 152 EALASAEKIGYPLMLKATAGGGGRGIRKVTSGAELAEAYQRTRDEAERAFGSGVVFLEKL 211

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
             D   +   V+ D       I V          K    +S+      +  D   E++  
Sbjct: 212 VTDARHVEVQVIADGQGTAWAIGVRDCSVQRRNQKVIEESSS----PLLTDDQAAELKAS 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           A     A+G  G    +FL+ P  +   +LE+N 
Sbjct: 268 AERLATAVGYAGAGTVEFLYHPGEKTFAFLEVNT 301


>gi|193872988|gb|ACF23184.1| D-alanine-D-alanine ligase [Streptococcus mitis]
          Length = 96

 Score = 91.3 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 30/96 (31%), Positives = 50/96 (52%), Gaps = 2/96 (2%)

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNST 212
               ++ +  ++L+EQ V+  E+  G++G+  +  T     V    FY Y+ KY     T
Sbjct: 1   ALKLAFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKIT 60

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
             +PAKI  D+   +++ A  A +AIG  G+SR DF
Sbjct: 61  MDIPAKISDDVIAVMRQYAETAFRAIGGLGLSRCDF 96


>gi|291532008|emb|CBK97593.1| acetyl-CoA carboxylase, biotin carboxylase [Eubacterium siraeum
           70/3]
          Length = 449

 Score = 91.3 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 38/219 (17%), Positives = 82/219 (37%), Gaps = 17/219 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  FG   E+     + +   I +   G  A     DK  +K+ +    VPV P    
Sbjct: 77  AIHPGFGFLSENSHFVRLCDKCGIKFIGPGADAMDAMGDKANAKKTMIENDVPVVPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGDQ 165
            +       +    I  P ++K   GG   GI +++K + +   +     ++  +   D 
Sbjct: 137 VVGTLEEAQEIAAKIGYPVMVKASAGGGGRGIRLVEKPEELEAAMTAAKQEAKQFFANDD 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+++ +   +   ++ D   +V  +            K    + + ++      D+ 
Sbjct: 197 IYIEKFIVNPRHVEIQLLADEHGNVIYLGERDCSLQRRNQKVLEESPSPIM----TEDLR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
           + +   A  A +A G       +FL D      +++E+N
Sbjct: 253 RRMGEAAVRAAKACGYANAGTVEFLVDK-DLNFYFMEMN 290


>gi|224085521|ref|XP_002307604.1| predicted protein [Populus trichocarpa]
 gi|222857053|gb|EEE94600.1| predicted protein [Populus trichocarpa]
          Length = 760

 Score = 91.3 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 41/224 (18%), Positives = 84/224 (37%), Gaps = 24/224 (10%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E      + E   + +      A     DK  SK+++ + GVP+ P    
Sbjct: 115 AIHPGYGFLSESSDFATLCEDKGLTFVGPPASAIRDMGDKSASKRIMGAAGVPLVPGYHG 174

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQS-----IPLDLLQSSSWNHGD 164
           +   ++        I  P +IKP  GG   G+ +++         +      ++S+    
Sbjct: 175 SEQDIELMKSEADKIGYPILIKPTHGGGGKGMRIVQSPNEFVDSFLGAQREAAASFGINT 234

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL-- 221
            +L+E+Y+     +   + GD   +V  +            K        +  A  P   
Sbjct: 235 -ILLEKYITKPRHIEVQIFGDKHGNVLHLYERDCSVQRRHQK-------IIEEAPAPNVM 286

Query: 222 -DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            D    + + A  A +A+G       +F+ D +S + +++E+N 
Sbjct: 287 NDFRSHLGQAAVSAAKAVGYHNAGTVEFIVDTVSGQFYFMEMNT 330


>gi|120405044|ref|YP_954873.1| carbamoyl-phosphate synthase ATP-binding subunit L [Mycobacterium
           vanbaalenii PYR-1]
 gi|119957862|gb|ABM14867.1| Carbamoyl-phosphate synthase L chain, ATP-binding protein
           [Mycobacterium vanbaalenii PYR-1]
          Length = 660

 Score = 91.3 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 42/222 (18%), Positives = 84/222 (37%), Gaps = 19/222 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      L+   I +    + A     DK+ +K  VS  GVPV P I  
Sbjct: 77  AVHPGYGFLSENAQFAEALDAAGIAFIGPPVAAIQTMGDKISAKAAVSEFGVPVVPGISR 136

Query: 112 --LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL-----QSSSWNHGD 164
             L ++  +     +  P ++KP  GG   G+ V++    +   L+      +S++   D
Sbjct: 137 PGLTDQDLIAGAADVGFPVLVKPSAGGGGKGMRVVQDASELRAALVSARREAASAFG-DD 195

Query: 165 QLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            L +E++V +   +   V+ DA  +V  +   +        K             +    
Sbjct: 196 TLFLERFVLNPRHIEVQVLADAHGNVVHLGERECSLQRRHQK----VIEEAPSPLLDPQT 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLS-RKVFWLEINV 264
              +   A    +++   G    +F+       + F++E+N 
Sbjct: 252 RARIGAAACDTARSVDYTGAGTVEFIVSADRPDEFFFMEMNT 293


>gi|325911955|ref|ZP_08174358.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus iners
           UPII 143-D]
 gi|325476257|gb|EGC79420.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus iners
           UPII 143-D]
          Length = 1055

 Score = 91.3 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 47/297 (15%), Positives = 105/297 (35%), Gaps = 38/297 (12%)

Query: 22  CASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ--- 69
           C  AL+  G+K   I         D   S  L    +  +   N++     E  ++Q   
Sbjct: 577 CVKALQKLGYKAIVINSNPETVSTDFSISDKLYFEPITLEDVLNIVDIEKPEGVIIQFGA 636

Query: 70  -------AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDS 120
                  A L+   +    + +     + D+    QV+ + G+     +        +D+
Sbjct: 637 QTAINLAAGLQEHGVKILGTDVEDINRAEDREEFDQVIKNLGLKQPKGLTATTRQGVIDA 696

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +++P        + ++  +  +   L  ++   +   +L++ Y+DG E    
Sbjct: 697 AMKIGYPVLVRPSYVLGGKAMEIVYNEAELEEYLDNNAYITNDHPILVDDYLDGKECDVD 756

Query: 181 VMGDAS---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQ 236
            + D     +      V  +  +S        +S  V P +    DI +++  +      
Sbjct: 757 AISDGVDILIPGIMEHVEHAGVHS-------GDSMAVYPPQSFSDDIQQKICEVTRKLAI 809

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           A+ C+GI    F+       V+ +E+N +   T     P ++   G    ++   ++
Sbjct: 810 ALKCQGIMNIQFIVR--DNDVYVIEVNPRASRT----VPFLSKITGIEMVQVATKII 860



 Score = 73.2 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 50/323 (15%), Positives = 108/323 (33%), Gaps = 48/323 (14%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI---------DVD------------RSVGLV 45
           G ++E + S   G     AL + G++V  +         D +             ++  +
Sbjct: 21  GQAAEFDYS---GTQACLALREEGYEVILVNSNPATIMTDTEIADKVYLEPLTVETLTRI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +    PD     L G  G +  +      IL+ L I    + + +   + D+   K++  
Sbjct: 78  IYQEYPDAILPTLGGQNGLNMALALSKTGILDKLNIELLGTKLKSIEQAEDREEFKKLCK 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G PV PS+ V+     +     I  P +++P       G  +    + +   + +   
Sbjct: 138 QLGEPVPPSLTVHNAEDALAFAEKIGYPIIVRPAFTMGGTGGGICNNRKELATVVARGLD 197

Query: 160 WNHGDQLLIEQYVDG---IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216
            +   + LIE+ + G   IE         +  +            +     + +S    P
Sbjct: 198 LSPVTECLIEKSIAGYKEIEFEVMRDCTDNCMIVCCMENFDPVGIH-----TGDSIVFSP 252

Query: 217 AK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV-------QPGM 268
           ++ +    Y+ ++  +    +A+   G        +P S     +E+N            
Sbjct: 253 SQTLSDKEYQMLRDCSLNLIRALKIEGGCNVQLALNPNSFDYDVIEVNPRVSRSSALASK 312

Query: 269 TPVSIFPEMAA--YAGYSFRELL 289
                  +MAA    G +  E++
Sbjct: 313 ATGYPIAKMAAKIAVGMTLDEII 335


>gi|295395551|ref|ZP_06805745.1| acetyl/propionyl-CoA carboxylase [Brevibacterium mcbrellneri ATCC
           49030]
 gi|294971570|gb|EFG47451.1| acetyl/propionyl-CoA carboxylase [Brevibacterium mcbrellneri ATCC
           49030]
          Length = 650

 Score = 91.3 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 88/221 (39%), Gaps = 17/221 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H  +G   E+    A  E   I +      A     DK+ +KQ V+S GVP+ P +  
Sbjct: 77  AIHPGYGFLSENAQFAAACEDAGIVFLGPTASAIRTMGDKITAKQAVASRGVPLVPGVAE 136

Query: 113 --VNRFTMDSQHL-ISPPYVIKPLKGGSSLGIIVIKK----DQSIPLDLLQSSSWNHGDQ 165
             ++   ++   L +  P +IKP  GG   G+  + K     +S+     +++S    D 
Sbjct: 137 SGLSNDQLEKAALDVGMPVLIKPSAGGGGKGMHAVFKQEDLRESLEAARREAASSFGDDT 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           L +E+ +     +   V+ D   +V  +   +        K           A +  +  
Sbjct: 197 LFLERLISTPRHIEVQVLADEHGNVIHLGERECSLQRRHQK----VIEEAPSALLDEETR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLS-RKVFWLEINV 264
             + + A    +++G RG    +F+    +  + F++E+N 
Sbjct: 253 ARIGQAAVETARSVGYRGAGTVEFIASADNPDEFFFMEMNT 293


>gi|167749995|ref|ZP_02422122.1| hypothetical protein EUBSIR_00963 [Eubacterium siraeum DSM 15702]
 gi|167657016|gb|EDS01146.1| hypothetical protein EUBSIR_00963 [Eubacterium siraeum DSM 15702]
          Length = 325

 Score = 91.3 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 47/234 (20%), Positives = 88/234 (37%), Gaps = 18/234 (7%)

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKP 132
           +   I           +  DK  +  ++    +P     LV   T D+ +    P V+KP
Sbjct: 94  DFSGIYVVGHRTKDVEMYDDKFSTNTLLLQNELPAVTDFLV---TADTVYNGEYPCVLKP 150

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSW-NHGDQLLIEQYVDGIELTCGVMGDA-SLDVT 190
           ++G  S G++     +       ++ +   +GD ++ E+Y+ G E+T  V  D  SL   
Sbjct: 151 IRGRGSQGVVKCDTPEEFIKARDEAFASGRYGDTMMAEEYLGGTEVTLTVFPDGTSLPFI 210

Query: 191 EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
           E    K+    Y      + ++ V+           +++   LA   +G + + R D   
Sbjct: 211 ERFDQKNGIAPYNGDVPVVKNSRVIE---DTPQLTALRKSCELAVWLLGLKAVVRIDCRA 267

Query: 251 DPLSRKVFWLEINVQPGMTP---------VSIFPEMAAYAGYSFRELLLWMVED 295
           D  +      + N +P +T           S+    A  AG  +  LL  M+E 
Sbjct: 268 DK-NGNFKMFDFNPKPNLTGASRPHRPDLNSLTLMAAEAAGMDYFGLLTKMLET 320


>gi|312870725|ref|ZP_07730832.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus iners
           LEAF 3008A-a]
 gi|311093737|gb|EFQ52074.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus iners
           LEAF 3008A-a]
          Length = 1055

 Score = 91.3 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 47/297 (15%), Positives = 105/297 (35%), Gaps = 38/297 (12%)

Query: 22  CASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ--- 69
           C  AL+  G+K   I         D   S  L    +  +   N++     E  ++Q   
Sbjct: 577 CVKALQKLGYKAIVINSNPETVSTDFSISDKLYFEPITLEDVLNIVDIEKPEGVIIQFGA 636

Query: 70  -------AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDS 120
                  A L+   +    + +     + D+    QV+ + G+     +        +D+
Sbjct: 637 QTAINLAAGLKEHGVKILGTDVEDINRAEDREEFDQVIKNLGLKQPKGLTATTRQGVIDA 696

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +++P        + ++  +  +   L  ++   +   +L++ Y+DG E    
Sbjct: 697 AIKIGYPVLVRPSYVLGGKAMEIVYNEAELEEYLDNNAYITNDHPILVDDYLDGKECDVD 756

Query: 181 VMGDAS---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQ 236
            + D     +      V  +  +S        +S  V P +    DI +++  +      
Sbjct: 757 AISDGVDILIPGIMEHVEHAGVHS-------GDSMAVYPPQSFSDDIQQKICEVTRKLAI 809

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           A+ C+GI    F+       V+ +E+N +   T     P ++   G    ++   ++
Sbjct: 810 ALKCQGIMNIQFIVR--DNDVYVIEVNPRASRT----VPFLSKITGIEMVQVATKII 860



 Score = 73.2 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 50/323 (15%), Positives = 108/323 (33%), Gaps = 48/323 (14%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI---------DVD------------RSVGLV 45
           G ++E + S   G     AL + G++V  +         D +             ++  +
Sbjct: 21  GQAAEFDYS---GTQACLALREEGYEVILVNSNPATIMTDTEIADKVYLEPLTVEALTRI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +    PD     L G  G +  +      IL+ L I    + + +   + D+   K++  
Sbjct: 78  IYQEYPDAILPTLGGQNGLNMALALSKTGILDKLNIELLGTKLKSIEQAEDREEFKKLCK 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G PV PS+ V+     +     I  P +++P       G  +    + +   + +   
Sbjct: 138 QLGEPVPPSLTVHNSEDALAFAEKIGYPIIVRPAFTMGGTGGGICNNRKELATVVARGLD 197

Query: 160 WNHGDQLLIEQYVDG---IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216
            +   + LIE+ + G   IE         +  +            +     + +S    P
Sbjct: 198 LSPVTECLIEKSIAGYKEIEFEVMRDCTDNCMIVCCMENFDPVGIH-----TGDSIVFSP 252

Query: 217 AK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV-------QPGM 268
           ++ +    Y+ ++  +    +A+   G        +P S     +E+N            
Sbjct: 253 SQTLSDKEYQMLRDCSLNLIRALKIEGGCNVQLALNPNSFDYDVIEVNPRVSRSSALASK 312

Query: 269 TPVSIFPEMAA--YAGYSFRELL 289
                  +MAA    G +  E++
Sbjct: 313 ATGYPIAKMAAKIAVGMTLDEII 335


>gi|322830808|ref|YP_004210835.1| urea carboxylase [Rahnella sp. Y9602]
 gi|321166009|gb|ADW71708.1| urea carboxylase [Rahnella sp. Y9602]
          Length = 1209

 Score = 91.3 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 32/214 (14%), Positives = 71/214 (33%), Gaps = 12/214 (5%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
           +G   E        E   I +             K R++++  +  VP+ P   +     
Sbjct: 82  YGFLSESAEFADACEAAGIAFIGPTAGQIREFGLKHRARELAGAANVPMTPGTGLLDSID 141

Query: 119 DS---QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQLLIEQY 171
           D+      I  P ++K   GG  +G+     ++++             +     + +E++
Sbjct: 142 DAVKAAAEIGYPIMLKSTAGGGGIGLTRCDNEEALRAAWDSVKRLGEQFFRDAGVFLERF 201

Query: 172 VD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
           VD    +   + GD    V  +            K             +P    + + R 
Sbjct: 202 VDRARHVEVQIFGDGKGRVVALGERDCSLQRRNQK----VVEETPAPDLPQASREALHRA 257

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           A    +++  R     +F++D    + ++LE+N 
Sbjct: 258 AVQLGKSVNYRSAGTVEFIYDAARDEFYFLEVNT 291


>gi|148263883|ref|YP_001230589.1| acetyl-CoA carboxylase, biotin carboxylase [Geobacter
           uraniireducens Rf4]
 gi|146397383|gb|ABQ26016.1| acetyl-CoA carboxylase carboxyltransferase subunit alpha [Geobacter
           uraniireducens Rf4]
          Length = 446

 Score = 91.3 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 81/220 (36%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+     I E   I +      +  L  DK+ ++Q V   GVP+ P    
Sbjct: 77  AIHPGYGFLSENAAFAEICENCGITFIGPSSESMRLMGDKISARQAVIKEGVPILPGTKE 136

Query: 114 NRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
               ++        I  P +IK   GG   G+ ++    ++P     + +         +
Sbjct: 137 GVNDVNEAVKIAKKIGFPVIIKATAGGGGRGMKIVHSPATLPNAFATARAEAQAGFGNPE 196

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+Y +    +   ++ D   +V  +            K      + V       ++ 
Sbjct: 197 VYIEKYCEEPRHVEIQILADKHGNVIHLGERDCSIQRRHQKIIEEAPSTVS----TPELR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K +   A  A +A+G   +   +FL D  +   +++E+N 
Sbjct: 253 KAMGDAAVRAAKAVGYNSVGTMEFLVDK-NNDFYFMEMNT 291


>gi|331696845|ref|YP_004333084.1| pyruvate carboxylase [Pseudonocardia dioxanivorans CB1190]
 gi|326951534|gb|AEA25231.1| Pyruvate carboxylase [Pseudonocardia dioxanivorans CB1190]
          Length = 457

 Score = 91.3 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 77/220 (35%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E   +        + +            DK+ ++++    GVP  P    
Sbjct: 80  AVHPGYGFLSESPALARACTEHGLTFVGPTAAQLEAMGDKISARRLAREAGVPTLPGSEQ 139

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQL 166
           +   +  +     +  P ++K   GG   G+ V+     +P  L  +++          L
Sbjct: 140 VRTPQEALAVAREVGLPLIVKASAGGGGRGMKVVSDVAELPSVLTTAAAEAAAAFGDPTL 199

Query: 167 LIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIY 224
            +E++V     +   V+GD    V              L+  +       PA  +PL + 
Sbjct: 200 YVERFVRNARHVEVQVLGDRHGHVV-----HLGERDCSLQRRNQKVVEEAPAPGLPLQVR 254

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +   A    + IG       +F+ D  + + F+LE+N 
Sbjct: 255 DALHAAAVRLARRIGYESAGTVEFVLDRDTGEFFFLEMNT 294


>gi|33864872|ref|NP_896431.1| acetyl-CoA carboxylase biotin carboxylase subunit [Synechococcus
           sp. WH 8102]
 gi|33632395|emb|CAE06851.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Synechococcus
           sp. WH 8102]
          Length = 448

 Score = 91.3 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 74/220 (33%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     +     + +      A     DK  +K  + + GVP  P    
Sbjct: 78  AIHPGYGFLAENDKFAEMCGDHGLTFIGPSPHAIRSMGDKSTAKATMQAVGVPTVPGSEG 137

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGDQ 165
            +   +        +  P +IK   GG   G+ +++    +         ++ +      
Sbjct: 138 LLAGPQDAAVLAEQMGYPVMIKATAGGGGRGMRLVQSPDQLNNLFKAAQGEAEAAFGNPG 197

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           L +E+++D    +   V+ D   +V  +            K             +  D+ 
Sbjct: 198 LYMEKFIDRPRHVEVQVLADRHGNVVHLGERDCSIQRRHQKLL----EEAPSPALDPDLR 253

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +   A  A ++I   G    +FL D      +++E+N 
Sbjct: 254 RRMGEAAVAAARSINYEGAGTVEFLLDRSGG-FYFMEMNT 292


>gi|83414173|dbj|BAE53877.1| D-alanine:D-alanine ligase [Streptococcus anginosus]
 gi|83415064|dbj|BAE53791.1| D-alanine:D-alanine ligase [Streptococcus constellatus subsp.
           pharyngis]
 gi|219564703|dbj|BAH03888.1| D-alanine:D-alanine ligase [Streptococcus anginosus]
          Length = 96

 Score = 91.0 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 28/96 (29%), Positives = 48/96 (50%), Gaps = 2/96 (2%)

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNST 212
               ++ +  ++LIEQ V+  E+  G++ +  +  +     V    FY YE KY     T
Sbjct: 1   ALELAFKYDSRVLIEQGVNAREIEVGLLENEGVKSSLPGEVVKDVAFYDYEAKYIDNKIT 60

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
             +PAK+  D+   +++ A  A  AIG  G++R DF
Sbjct: 61  MDIPAKLSEDVIATMRQYAEKAFHAIGGVGLARCDF 96


>gi|296274303|ref|YP_003656934.1| carbamoyl-phosphate synthase L chain ATP-binding protein
           [Arcobacter nitrofigilis DSM 7299]
 gi|296098477|gb|ADG94427.1| Carbamoyl-phosphate synthase L chain ATP-binding protein
           [Arcobacter nitrofigilis DSM 7299]
          Length = 483

 Score = 91.0 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 46/243 (18%), Positives = 92/243 (37%), Gaps = 24/243 (9%)

Query: 35  QIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSM 91
            +++D+ + L L   + D     +H  +G   E        +   I +        AL  
Sbjct: 62  YLNIDKIISLALKA-QCD----AIHPGYGFLSESAEFAEACDKAGIIFVGPKAEHIALFG 116

Query: 92  DKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147
           DKM SK  +   GVPV       I+  +        I  P +IK   GG   G+ ++K++
Sbjct: 117 DKMASKVAMKKIGVPVLEGTSTPIVDIKEGEKISREIGFPIIIKAAFGGGGRGMRIVKEE 176

Query: 148 QS----IPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSY 202
           +           ++  +       IE+YV+    +   V+ D   +V  +          
Sbjct: 177 KDFKAMFEAATAEAKKFFGKGDAFIEKYVENPRHIEVQVIADKYGNVLHLGERDCSIQRR 236

Query: 203 ELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
             K        + P  ++  ++ +E+ R++  A   +G   +   +FL D     ++++E
Sbjct: 237 HQK-----VIEIAPSPRLNENVRRELYRVSTKAMFKLGYESVGTIEFLVDAQDN-IYFIE 290

Query: 262 INV 264
           +N 
Sbjct: 291 MNT 293


>gi|288935435|ref|YP_003439494.1| urea carboxylase [Klebsiella variicola At-22]
 gi|288890144|gb|ADC58462.1| urea carboxylase [Klebsiella variicola At-22]
          Length = 1201

 Score = 91.0 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 31/219 (14%), Positives = 76/219 (34%), Gaps = 15/219 (6%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       E   + +             K  ++ +  + GVP+     +
Sbjct: 77  AIHPGYGFLSENATFAEACEAAGLAFVGPTPQQLRTFGLKHTARALAKAEGVPLLEGSEL 136

Query: 114 NRFTMDS---QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQL 166
              + ++      +  P ++K   GG  +G+ V +  + +                   +
Sbjct: 137 LADSEEACRAAEAVGYPVMLKSTAGGGGIGMRVCRDARELSEAFATVQRLGQNNFSDAGV 196

Query: 167 LIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
            +E+Y++    L   + GD   +V  + V          K             +P  + +
Sbjct: 197 FLEKYIERARHLEVQIFGDGEGEVIALGVRDCSLQRRNQK----VIEETPAPNLPDGMAQ 252

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +   A    +A+  R     +F++D  +++ ++LE+N 
Sbjct: 253 ALCSAAIALGKAVNYRSAGTVEFVYDSAAQRFYFLEVNT 291


>gi|145237730|ref|XP_001391512.1| 3-methylcrotonyl-CoA carboxylase subunit alpha (MccA) [Aspergillus
           niger CBS 513.88]
 gi|134075986|emb|CAK48180.1| unnamed protein product [Aspergillus niger]
          Length = 709

 Score = 91.0 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 54/287 (18%), Positives = 98/287 (34%), Gaps = 44/287 (15%)

Query: 13  EVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNV--------------- 57
           E++L  G+  A      G +V+ +  D       A   P  AFN+               
Sbjct: 49  EIALRVGRTAAQH----GIRVTTLYTDPDSKAQHALSSP-FAFNLGSVSAYLDGDRIIEI 103

Query: 58  --------LHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP 106
                   +H  +G   E+           + +      A     DK +SK+++++ GVP
Sbjct: 104 AKKEGCQGIHPGYGFLSENAAFARKCTEAGLVFIGPFWKAIEDMGDKSQSKKIMTAAGVP 163

Query: 107 VCPSILVNRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
             P    +   ++        I  P +IK +KGG   G+ +          L  + S   
Sbjct: 164 CVPGYHGDNQDVNFLEAEADKIKYPVLIKAIKGGGGKGMRIAHTKADFQAQLQSAKSEAM 223

Query: 163 ----GDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
                D +L+E+Y+     +   V  D   +   +            K            
Sbjct: 224 NSFGDDHVLVEKYITTPRHIEVQVFADKQGNAVALGERDCSIQRRHQKIL----EESPAP 279

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +P    K++   A  A  A+G  G    +F+FD  + + F++E+N 
Sbjct: 280 HLPDATRKDIWAKARSAALAVGYEGAGTVEFIFDNDTGEFFFMEMNT 326


>gi|88807226|ref|ZP_01122738.1| acetyl-CoA carboxylase [Synechococcus sp. WH 7805]
 gi|88788440|gb|EAR19595.1| acetyl-CoA carboxylase [Synechococcus sp. WH 7805]
          Length = 447

 Score = 91.0 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 72/220 (32%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     I     I +      A     DK  +K  + + GVP  P    
Sbjct: 78  AIHPGYGFLAENDRFAEICRDHGITFVGPSPHAIRSMGDKSTAKTTMQNVGVPTVPGSEG 137

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSWNHGDQ 165
            +       D    +  P +IK   GG   G+ +++    +         ++ +      
Sbjct: 138 LLSGPDEAADLAMAMGYPVMIKATAGGGGRGMRLVQSPDQLENLFKAAQGEAEAAFGNPG 197

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           L +E+++D    +   V+ D    V  +            K             +  ++ 
Sbjct: 198 LYMEKFIDRPRHVEVQVLADRHGHVVHLGERDCSIQRRHQKLL----EEAPSPALDQNLR 253

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +   A  A ++I   G    +FL D      +++E+N 
Sbjct: 254 LRMGEAAVAAARSINYEGAGTVEFLLDRNGG-FYFMEMNT 292


>gi|254526583|ref|ZP_05138635.1| acetyl-CoA carboxylase, biotin carboxylase [Prochlorococcus marinus
           str. MIT 9202]
 gi|221538007|gb|EEE40460.1| acetyl-CoA carboxylase, biotin carboxylase [Prochlorococcus marinus
           str. MIT 9202]
          Length = 449

 Score = 91.0 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 41/220 (18%), Positives = 85/220 (38%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     + +   I +      A     DK  +K+ + + GVP  P    
Sbjct: 77  AIHPGYGFLAENDKFAEMCKDHGIVFIGPSPKAIRSMGDKSTAKETMEAVGVPTVPGSKG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSWNHGDQ 165
            +            I  P +IK   GG   G+ +++   ++         ++ +    D 
Sbjct: 137 LLSNIDEAYKLADDIGYPVIIKATAGGGGRGMRLVENSDNLEKMFKAAQGEAEAAFGNDG 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           L +E+++     +   ++ D S +V  +        S + ++  L      PA I  ++ 
Sbjct: 197 LYMEKFIKKPRHVEIQILADRSGNVVHLGERD---CSVQRRHQKLLEESPSPA-INAELR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K++   A  A ++IG  G    +FL D      +++E+N 
Sbjct: 253 KKMGNAAIAAAKSIGYEGAGTVEFLVDDDDN-FYFMEMNT 291


>gi|327396664|dbj|BAK14085.1| urea amidolyase DUR1,2 [Pantoea ananatis AJ13355]
          Length = 1201

 Score = 91.0 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 39/255 (15%), Positives = 87/255 (34%), Gaps = 30/255 (11%)

Query: 58  LHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
           +H  +G   E+       E   + +             K  ++ +  + GVP+     + 
Sbjct: 78  IHPGYGFLSENAGFAEACEAAGLIFVGPTPQQLRTFGLKHTARALAKAEGVPLLEGSELL 137

Query: 115 RFTMDS---QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQLL 167
               ++      +  P ++K   GG  +G+ V +    +                   + 
Sbjct: 138 ADAAEACRVAETVGYPVMLKSTAGGGGIGMRVCRDAHELTEAFDTVQRLGQNNFSDAGVF 197

Query: 168 IEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE 226
           +E Y++    L   + GD   DV  + V          K             +P  + + 
Sbjct: 198 LENYIERARHLEVQIFGDGQGDVIALGVRDCSVQRRNQK----VIEETPAPNLPEGMAQA 253

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           +   A    +A+  R     +F++D L+++ ++LE+N             +    G + +
Sbjct: 254 LCEAAVALGKAVNYRSAGTVEFVYDSLNQQFYFLEVNT-----------RLQVEHGVTEQ 302

Query: 287 ----ELLLWMVEDAS 297
               +L+ WM+E A+
Sbjct: 303 VWGVDLVKWMIELAA 317


>gi|291439490|ref|ZP_06578880.1| acetyl/propionyl CoA carboxylase alpha subunit [Streptomyces
           ghanaensis ATCC 14672]
 gi|291342385|gb|EFE69341.1| acetyl/propionyl CoA carboxylase alpha subunit [Streptomyces
           ghanaensis ATCC 14672]
          Length = 656

 Score = 91.0 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 84/221 (38%), Gaps = 17/221 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---- 109
            +H  +G   E+           + +      A AL  DK+R+K+ V + GVPV P    
Sbjct: 87  AVHPGYGFLAENAGFARACAEAGLVFIGPPADAIALMGDKIRAKETVRAAGVPVVPGSSG 146

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
           S L +    D+   I  P ++KP  GG   G+ +++   ++  +L  +          D 
Sbjct: 147 SGLSDAQLADAARGIGMPVLLKPSAGGGGKGMRLVRDASALADELAAARREARASFGDDT 206

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           LL+E+++D    +   V+ D    V  +   +        K             +  +  
Sbjct: 207 LLVERWIDRPRHIEIQVLADGHGGVVHLGERECSLQRRHQKII----EEAPSVLLDEETR 262

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLS-RKVFWLEINV 264
             +   A  A ++ G RG    +F+         +++E+N 
Sbjct: 263 AAMGEAAVQAARSCGYRGAGTVEFIVPGGDPSSYYFMEMNT 303


>gi|284040085|ref|YP_003390015.1| acetyl-CoA carboxylase, biotin carboxylase [Spirosoma linguale DSM
           74]
 gi|283819378|gb|ADB41216.1| acetyl-CoA carboxylase, biotin carboxylase [Spirosoma linguale DSM
           74]
          Length = 447

 Score = 91.0 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 79/221 (35%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+     I     I +  +         DK  +K  + + GVPV P    
Sbjct: 77  AIHPGYGFLSENAEFSQICADYGIKFIGATAEQINGMGDKSTAKATMKAAGVPVIPGSDG 136

Query: 112 LVNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS-----SSWNHGD 164
           L+       +    +  P ++K   GG   G+ +++ +         +     +++ +  
Sbjct: 137 LLESVEQGKRLSTEMGYPVIVKATAGGGGRGMRIVRSEDEFEKAWNDARTEAGAAFGNDG 196

Query: 165 QLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
             L E++V+    +   ++GD    V  ++           K             +  ++
Sbjct: 197 LYL-EKFVEEPRHIEIQIVGDQYGKVCHLSERDCSIQRRHQK----LIEETPSPVVSPEL 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +++   A    QAIG  G    +FL D      +++E+N 
Sbjct: 252 REKMGAAAIKGAQAIGYEGAGTVEFLVDKH-GDFYFMEMNT 291


>gi|167533097|ref|XP_001748229.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163773349|gb|EDQ86990.1| predicted protein [Monosiga brevicollis MX1]
          Length = 1135

 Score = 91.0 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 40/234 (17%), Positives = 90/234 (38%), Gaps = 21/234 (8%)

Query: 46  LAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS 102
           L  +  D   + +H  +G   E   +    E   I +        +   DK +++ +   
Sbjct: 62  LIRIAIDNKVDAIHPGYGFLSESVELSRACEEAGIVFVGPNSKQLSRFGDKTQARALALE 121

Query: 103 CGVPVCP------SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-- 154
            G+PV P      S+   R  ++  +  + P ++K   GG   G+ ++ K + +   +  
Sbjct: 122 HGLPVVPGTDAVQSVEEAREFVEGPNGCNYPVIVKASMGGGGRGMRIVHKPEQLEEAINR 181

Query: 155 --LQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
              ++ +      + +E++V     +   ++GD +       V         ++      
Sbjct: 182 CRSEALAAFGDGAVFVERFVPRPRHIEVQIVGDGT------DVVHLFERDCSVQRRHQKV 235

Query: 212 THVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             + PA K+P D+   +   A    +AI        +FL DP + + +++E+N 
Sbjct: 236 VEIAPAPKLPEDVRMNICNDAVRLAKAINYSNAGTVEFLLDPETNQHYFMEVNP 289


>gi|83415074|dbj|BAE53796.1| D-alanine:D-alanine ligase [Streptococcus mitis]
          Length = 96

 Score = 91.0 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 31/96 (32%), Positives = 50/96 (52%), Gaps = 2/96 (2%)

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNST 212
               ++ +  ++L+EQ V+  E+  G++G+  +  T     V   DFY Y+ KY     T
Sbjct: 1   ALKLAFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVDFYDYDAKYIDNKIT 60

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
             +PAKI  D    +++ A  A +AIG  G+SR DF
Sbjct: 61  MDIPAKISDDEVAVMRQNAETAFRAIGGLGLSRCDF 96


>gi|16078885|ref|NP_389706.1| acetyl-CoA carboxylase biotin carboxylase subunit [Bacillus
           subtilis subsp. subtilis str. 168]
 gi|221309715|ref|ZP_03591562.1| acetyl-CoA carboxylase biotin carboxylase subunit [Bacillus
           subtilis subsp. subtilis str. 168]
 gi|221314037|ref|ZP_03595842.1| acetyl-CoA carboxylase biotin carboxylase subunit [Bacillus
           subtilis subsp. subtilis str. NCIB 3610]
 gi|221318959|ref|ZP_03600253.1| acetyl-CoA carboxylase biotin carboxylase subunit [Bacillus
           subtilis subsp. subtilis str. JH642]
 gi|221323233|ref|ZP_03604527.1| acetyl-CoA carboxylase biotin carboxylase subunit [Bacillus
           subtilis subsp. subtilis str. SMY]
 gi|81555986|sp|O34544|ACCC2_BACSU RecName: Full=Biotin carboxylase 2; AltName: Full=Acetyl-CoA
           carboxylase subunit A 2; Short=ACC 2
 gi|2266425|emb|CAA74216.1| yngH [Bacillus subtilis subsp. subtilis str. 168]
 gi|2634207|emb|CAB13707.1| biotin carboxylase subunit [Bacillus subtilis subsp. subtilis str.
           168]
          Length = 444

 Score = 91.0 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 30/216 (13%), Positives = 81/216 (37%), Gaps = 16/216 (7%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
           +G   E+       +   I +        A    K+ +++ + + GVPV P +  +   +
Sbjct: 82  YGLLSENSRFAERCKQENIVFIGPSPDIIAKMGSKIEARKAMEAAGVPVVPGVSESLGDI 141

Query: 119 DSQHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQLLIEQ 170
           ++       I  P ++K   GG  +G+  ++ ++++         +++ +     + IE+
Sbjct: 142 EAACRTASQIGYPVMLKASAGGGGIGMQRVENEEALKKAYEGNKKRAADFFGDGSMYIEK 201

Query: 171 YVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQ 228
            ++    +   ++ D                   ++          P+  +  ++  ++ 
Sbjct: 202 VIEHARHIEVQLLADQHGHTV-----HLFERDCSVQRRHQKVIEEAPSPFVDDELRMKIG 256

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + A  A +AIG       +F+ D      ++LE+N 
Sbjct: 257 QTAVKAAKAIGYTNAGTIEFIVDQKQN-FYFLEMNT 291


>gi|83414199|dbj|BAE53890.1| D-alanine:D-alanine ligase [Streptococcus intermedius]
          Length = 96

 Score = 91.0 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 30/96 (31%), Positives = 46/96 (47%), Gaps = 2/96 (2%)

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNST 212
               ++ +  ++LIEQ V+  E+  G+ G+     +     V    FY YE KY     T
Sbjct: 1   ALKLAFKYDSRVLIEQGVNAREIEVGLFGNEGAKSSLPGEVVKDVAFYDYEAKYIDNKIT 60

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
             +PAK+  D+   ++  A  A  AIG  G+SR DF
Sbjct: 61  MDIPAKLSEDVIATMRDYAEKAFHAIGGVGLSRCDF 96


>gi|83415054|dbj|BAE53786.1| D-alanine:D-alanine ligase [Streptococcus peroris]
          Length = 96

 Score = 91.0 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 50/96 (52%), Gaps = 2/96 (2%)

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNST 212
               ++ +  ++L+EQ V+  E+  G++G+  +  +     V    FY YE KY     T
Sbjct: 1   ALDLAFKYDSRVLVEQGVNAREIEVGLLGNYDVKSSLPGEVVKDVAFYDYEAKYIDNKIT 60

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
             +PAK+  D+   +++ A  A +AIG  G+SR DF
Sbjct: 61  MDIPAKLSDDVIATMRKNAETAFRAIGGLGLSRCDF 96


>gi|121534313|ref|ZP_01666137.1| carbamoyl-phosphate synthase, large subunit [Thermosinus
           carboxydivorans Nor1]
 gi|121307083|gb|EAX48001.1| carbamoyl-phosphate synthase, large subunit [Thermosinus
           carboxydivorans Nor1]
          Length = 1073

 Score = 91.0 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 48/295 (16%), Positives = 100/295 (33%), Gaps = 42/295 (14%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G +   I         D D              V  V+   +PD       G   
Sbjct: 580 ALREMGVETVIINNNPETVSTDFDTADRLYFEPLTVEDVLHVVEKEQPDGVIVQFGGQTA 639

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQ 121
            +  V   L    +P   + + +   + D+ +   +V   G+P    + V       +  
Sbjct: 640 INLAVP--LARAGVPILGTSVESIDCAEDRKKFDALVERLGIPRPAGVSVTNMAEAREKA 697

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
            +I  P V++P        + ++  +  +   L ++   +    +LI++Y+ G E+    
Sbjct: 698 GVIGYPVVVRPSYVLGGRAMQIVYNENELVEYLTKAVQASTDRPVLIDRYIQGTEVEVDA 757

Query: 182 MGDAS---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQA 237
           + D     +      + ++  +S        +S  V PA+ +  D    +         A
Sbjct: 758 IADGQDVLIPGIMEHIERAGVHS-------GDSIAVYPARTLGPDEITRIVDYTKRLALA 810

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +  RG+    F+      +V+ LE N +   T     P ++   G    +L   +
Sbjct: 811 LNVRGLINIQFVV--ADGQVYILEANPRSSRT----VPFLSKVTGIPMVQLATRI 859



 Score = 80.6 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 51/287 (17%), Positives = 112/287 (39%), Gaps = 35/287 (12%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQIDVDRS---------------------VGLV 45
           G ++E + +   G     AL++ G +V  ++ + +                     +  +
Sbjct: 21  GQAAEFDYA---GTQACRALKEEGLEVVLVNSNPATIMTDDNIADRVYIEPLTPDFIEEI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +A  +PD     L G  G +  V    + +LE   +    + + A   + D+   +  + 
Sbjct: 78  IAKERPDGLLPTLGGQVGLNLAVTAAERGVLERYGVKLLGTPLAAIKKAEDRELFRATMQ 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G PV  S + +     +     I  P +++P       G  ++  D  +   + +   
Sbjct: 138 QIGQPVPESTIASTLAQALRFAKDIGYPLIVRPAYTLGGTGGGIVHNDAELGEVVARGLK 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   Q+L+E+ + G  E+   VM D + +   I V   +     +   + +S  V P++
Sbjct: 198 HSLIGQVLLERSLAGWKEIEYEVMRDGADN--CIVVCNMENLD-PVGIHTGDSIVVAPSQ 254

Query: 219 -IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +  + Y+ ++  A    +A+G  G     F  DP S + + +E+N 
Sbjct: 255 TLSDEEYQMLRSAALAIIRALGIEGGCNVQFALDPHSSRYYVIEVNP 301


>gi|83414131|dbj|BAE53856.1| D-alanine:D-alanine ligase [Streptococcus sanguinis]
          Length = 96

 Score = 91.0 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 26/95 (27%), Positives = 49/95 (51%), Gaps = 2/95 (2%)

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTH 213
              ++ +  ++L+EQ V   E+  G++G+  +  +     V    FY Y+ KY     T 
Sbjct: 2   LDLAFKYDSRVLVEQGVTAREIEVGLLGNVDVKSSLPGEVVKDVAFYDYQAKYIDNKITM 61

Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
            +PA++P  +   +++ A  A +A+G  G+SR DF
Sbjct: 62  AIPAQLPEGVVNTMRQNAETAFRALGGLGLSRCDF 96


>gi|311695433|gb|ADP98306.1| methylcrotonoyl-coenzyme A carboxylase 1 (alpha) [marine bacterium
           HP15]
          Length = 656

 Score = 91.0 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 76/220 (34%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       +   + +      A  L   K RSK  +   GVPV P    
Sbjct: 77  CIHPGYGFLSENAAFANACKDAGLVFVGPPASAIELMGSKRRSKIAMQEAGVPVVPGYEG 136

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS-----SWNHGD 164
           N    D    +   I  P +IK   GG   G+ +++ +  +  ++ ++      ++   +
Sbjct: 137 NNANDDELIAAAKDIGYPLMIKASAGGGGRGMRLVESESELADNIKRARSESKQAFGDDE 196

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
            +L +  ++   +   V  D   +   +            K             +  ++ 
Sbjct: 197 LILEKAVIEPRHVEIQVFADRHGNAVYLGERDCSVQRRHQK----VVEEAPSPFVTPELR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +   A  A  A    G    +FL D   R  ++LE+N 
Sbjct: 253 QAMGEAAVKAALACNYEGAGTVEFLVDKH-RNFYFLEMNT 291


>gi|325294259|ref|YP_004280773.1| acetyl-CoA carboxylase, biotin carboxylase [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325064707|gb|ADY72714.1| acetyl-CoA carboxylase, biotin carboxylase [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 449

 Score = 91.0 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 36/219 (16%), Positives = 77/219 (35%), Gaps = 16/219 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+     I     + +         L  DK ++++V    GVPV P   +
Sbjct: 77  AIHPGYGFLSENPGFAEICTACGMKFIGPSPETMVLMGDKAKAREVAIKAGVPVVPGSGI 136

Query: 114 NRFTMDSQ---HLISPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSWNHGDQL 166
            +   ++      I  P ++K   GG   G+ +I   +         + ++ +     ++
Sbjct: 137 IKNVQEALKVCEEIGYPVLVKAAHGGGGRGMRLITSSKEAKTLIVTAMAEAEAAFGSGEV 196

Query: 167 LIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
            IE+Y+     +   V+ D   +V      +        K             +  D+  
Sbjct: 197 YIEKYIKNPRHIEIQVVADQFGNVVTFGERECSLQRRHQKVL----EEAPSPFVDEDLRN 252

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           ++   A    + I   G    +FL D   +  +++E+N 
Sbjct: 253 KLSDAAKKIAEFINYEGAGTVEFLVDK-DKNFYFIEMNT 290


>gi|255037895|ref|YP_003088516.1| acetyl-CoA carboxylase, biotin carboxylase [Dyadobacter fermentans
           DSM 18053]
 gi|254950651|gb|ACT95351.1| acetyl-CoA carboxylase, biotin carboxylase [Dyadobacter fermentans
           DSM 18053]
          Length = 448

 Score = 91.0 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 78/221 (35%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+     I     I +  +         DK  +K  + + GVPV P    
Sbjct: 77  AIHPGYGFLSENAEFSQICADYGIKFIGATAAQINGMGDKATAKATMIAAGVPVVPGSEG 136

Query: 112 LVNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGD 164
           L+       +    I  P ++K   GG   G+ VI K +             ++++ +  
Sbjct: 137 LLESLEQGKELAEGIGYPVIVKATAGGGGRGMRVINKPEEFEKAWNDARTESAAAFGNDG 196

Query: 165 QLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
             L E++V+    +   ++GD    V  ++           K             I  ++
Sbjct: 197 LYL-EKFVEEPRHIEIQIIGDQFGKVCHLSERDCSIQRRHQK----LVEETPSPIITPEL 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +   A    QAIG  G    +FL D      +++E+N 
Sbjct: 252 RERMGAAAIKGAQAIGYEGAGTIEFLVDKH-GDFYFMEMNT 291


>gi|110834753|ref|YP_693612.1| urea carboxylase/allophanate hydrolase [Alcanivorax borkumensis
           SK2]
 gi|110647864|emb|CAL17340.1| urea carboxylase/allophanate hydrolase [Alcanivorax borkumensis
           SK2]
          Length = 1195

 Score = 91.0 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 41/257 (15%), Positives = 84/257 (32%), Gaps = 32/257 (12%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       E   I +             K  ++ +     VP+ P   +
Sbjct: 77  AVHPGYGFLSENPDFVKGCEARGIAFIGPTPEQMDTFGLKHTARALAEKNDVPLLPGTGL 136

Query: 114 ---NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN----HGDQL 166
                  + +   I  P ++K   GG  +G+ +    +++          +      D +
Sbjct: 137 LNDKEAALKAAEKIRYPVMLKSTAGGGGIGMQICDNAENLDKAWDSVRRLSANNFSNDGV 196

Query: 167 LIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIY 224
            IE+Y+     +   V GD       +            +          PA  +P  + 
Sbjct: 197 FIEKYIARARHIEVQVFGDGKGQAVTLGE-----RDCSAQRRHQKVLEETPAPNLPDHVR 251

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
            E+   A    QA+  R     +F+ D  +   ++LE+N             +    G +
Sbjct: 252 HELHDTARTLMQAVHYRNAGTVEFILDQDTNTFYFLEVNT-----------RLQVEHGVT 300

Query: 285 ---FR-ELLLWMVEDAS 297
              F  +L+ WM++ A+
Sbjct: 301 EQIFGVDLVEWMIKLAA 317


>gi|261321763|ref|ZP_05960960.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella ceti
           M644/93/1]
 gi|261294453|gb|EEX97949.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella ceti
           M644/93/1]
          Length = 288

 Score = 91.0 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 43/209 (20%), Positives = 82/209 (39%), Gaps = 18/209 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---- 109
            +H  +G   E+     ILE  +I +         +  DK+ +K+     G+PV P    
Sbjct: 84  AIHPGYGFLSENAKFAEILEAHDITFIGPTASHIRIMGDKIEAKRTAKRLGIPVVPGSDG 143

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
            +            I  P +IK   GG   G+ V +  + +P+ L     ++ +    D 
Sbjct: 144 GVTDEVEAARIAKEIGYPVIIKASAGGGGRGMKVARSAEELPIALATARSEAGAAFGDDA 203

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELK-YSSLNSTHVLPAKIPLDI 223
           + IE+Y++    +   VMGD + +   +            K +   NS    PA +  + 
Sbjct: 204 VYIEKYLEKPRHIEVQVMGDGAGNAVHLGERDCSLQRRHQKVWEEGNS----PA-LNAEA 258

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            +++  +   A   +G RG    +FL++ 
Sbjct: 259 REKIGMICANACAELGYRGAGTIEFLYED 287


>gi|149915710|ref|ZP_01904235.1| acetyl-CoA carboxylase [Roseobacter sp. AzwK-3b]
 gi|149810292|gb|EDM70137.1| acetyl-CoA carboxylase [Roseobacter sp. AzwK-3b]
          Length = 471

 Score = 91.0 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 43/233 (18%), Positives = 83/233 (35%), Gaps = 14/233 (6%)

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           S+  V      D  +   +G   E+     +     + +      A     DK R+++V 
Sbjct: 82  SLVHVAKMTGCDAVYPG-YGFLSENADFADLCAQNGLKFVGPSADAIRTMGDKARAREVA 140

Query: 101 SSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL- 155
           S  GVPV P                  +  P ++K   GG   G+ ++++  +     L 
Sbjct: 141 SGLGVPVVPGSEGAFTDPAAAESVAADVGFPMLLKAKSGGGGRGMRIVRELDAFRAQFLQ 200

Query: 156 ---QSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
              ++ +      + IE++ D    +   VMGD                S + ++  L  
Sbjct: 201 ASREAEAAFGDGGVYIERFFDAVRHIEIQVMGDGRGGAVAF---DERDCSVQRRHQKLIE 257

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
               PA +  D+   ++  A    Q I   G    +F+ D  + + F++E+N 
Sbjct: 258 ESPSPA-VGPDLRARLKEAALKLTQGISYEGAGTIEFILDVKTGEFFFIEMNT 309


>gi|260366194|ref|ZP_05778654.1| carbamoyl-phosphate synthase L chain, ATP binding domain protein
           [Vibrio parahaemolyticus K5030]
 gi|260879836|ref|ZP_05892191.1| methylcrotonoyl-CoA carboxylase, alpha subunit [Vibrio
           parahaemolyticus AN-5034]
 gi|260894510|ref|ZP_05903006.1| methylcrotonoyl-CoA carboxylase, alpha subunit [Vibrio
           parahaemolyticus Peru-466]
 gi|308086571|gb|EFO36266.1| methylcrotonoyl-CoA carboxylase, alpha subunit [Vibrio
           parahaemolyticus Peru-466]
 gi|308092680|gb|EFO42375.1| methylcrotonoyl-CoA carboxylase, alpha subunit [Vibrio
           parahaemolyticus AN-5034]
 gi|308114844|gb|EFO52384.1| carbamoyl-phosphate synthase L chain, ATP binding domain protein
           [Vibrio parahaemolyticus K5030]
          Length = 691

 Score = 91.0 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 82/221 (37%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+  +        I +      A      K ++K ++S   VP+ P    
Sbjct: 77  AIHPGYGFLSENPKLAKACSENGIVFIGPSTSAIEAMGSKSQAKAIMSEANVPLVPGYHG 136

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
              ++D        I  P ++K  +GG   G+ V+     +PL +     ++ S     Q
Sbjct: 137 TDNSVDHLLAEAEKIGYPVMLKATQGGGGKGMRVVNSAAEMPLAIDGAQREALSSFGDKQ 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           LL+E+ +     +   V  D   +   ++           K          PA  +  ++
Sbjct: 197 LLVEKCILQPRHVEVQVFADQHGNCVYLSDRDCSIQRRHQK-----VVEEAPAPGLSDEL 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            K++   A  A QAI   G    +FL D    + +++E+N 
Sbjct: 252 RKQMGEAAVQAAQAIDYVGAGTVEFLLDSR-GQFYFMEMNT 291


>gi|28900983|ref|NP_800638.1| putative acyl-CoA carboxylase alpha chain [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|28809429|dbj|BAC62471.1| putative acyl-CoA carboxylase alpha chain [Vibrio parahaemolyticus
           RIMD 2210633]
          Length = 704

 Score = 91.0 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 82/221 (37%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+  +        I +      A      K ++K ++S   VP+ P    
Sbjct: 90  AIHPGYGFLSENPKLAKACSENGIVFIGPSTSAIEAMGSKSQAKAIMSEANVPLVPGYHG 149

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
              ++D        I  P ++K  +GG   G+ V+     +PL +     ++ S     Q
Sbjct: 150 TDNSVDHLLAEAEKIGYPVMLKATQGGGGKGMRVVNSAAEMPLAIDGAQREALSSFGDKQ 209

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           LL+E+ +     +   V  D   +   ++           K          PA  +  ++
Sbjct: 210 LLVEKCILQPRHVEVQVFADQHGNCVYLSDRDCSIQRRHQK-----VVEEAPAPGLSDEL 264

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            K++   A  A QAI   G    +FL D    + +++E+N 
Sbjct: 265 RKQMGEAAVQAAQAIDYVGAGTVEFLLDSR-GQFYFMEMNT 304


>gi|327480620|gb|AEA83930.1| biotin carboxylation domain-containing protein [Pseudomonas
           stutzeri DSM 4166]
          Length = 1199

 Score = 91.0 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 37/234 (15%), Positives = 81/234 (34%), Gaps = 27/234 (11%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---QHLISPPYVIKP 132
            I +         +   K  ++ +    GVP+     +     D+      +  P ++K 
Sbjct: 99  GIAFVGPTPEQLRVFGLKHTARALAKQRGVPMLEGTELLDSLADALGAAEQVGYPVMLKS 158

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQLLIEQYVD-GIELTCGVMGDASL 187
             GG  +G+ V +    +                   + IE+Y++    L   V GD + 
Sbjct: 159 TAGGGGIGMRVCRSAAELTDAFDAVKRLGQNNFSDSGVFIEKYIERARHLEVQVFGDGAG 218

Query: 188 DVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           +V  + V          K             +P  + + +   A    +A+  R     +
Sbjct: 219 EVIALGVRDCSVQRRNQKVL----EETPAPNLPTGMAEALCEAAITLAKAVSYRSAGTVE 274

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR----ELLLWMVEDAS 297
           F++D  +++ ++LE+N             +    G + +    +L+ WM+E A+
Sbjct: 275 FVYDAEAQRFYFLEVNT-----------RLQVEHGVTEQVWGVDLVRWMIELAA 317


>gi|83414197|dbj|BAE53889.1| D-alanine:D-alanine ligase [Streptococcus intermedius]
          Length = 96

 Score = 91.0 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 30/96 (31%), Positives = 46/96 (47%), Gaps = 2/96 (2%)

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNST 212
               ++ +  ++LIEQ V+  E+  G+ G+     +     V    FY YE KY     T
Sbjct: 1   ALKLAFKYDSRVLIEQGVNAREIEVGLFGNERAKSSLPGEVVKDVAFYDYEAKYIDNKIT 60

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
             +PAK+  D+   ++  A  A  AIG  G+SR DF
Sbjct: 61  MDIPAKLSEDVIATMRDYAEKAFHAIGGVGLSRCDF 96


>gi|83414047|dbj|BAE53814.1| D-alanine:D-alanine ligase [Streptococcus oralis]
 gi|193873060|gb|ACF23220.1| D-alanine-D-alanine ligase [Streptococcus oralis]
          Length = 96

 Score = 91.0 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 50/96 (52%), Gaps = 2/96 (2%)

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNST 212
               ++ +  ++L+EQ V+  E+  G++G+  +  T     V    FY Y+ KY     T
Sbjct: 1   ALELAFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKIT 60

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
             +PA+I  D+   +++ A  A +AIG  G+SR DF
Sbjct: 61  MDIPARISDDVVAVMRQNAETAFRAIGGLGLSRCDF 96


>gi|222056138|ref|YP_002538500.1| acetyl-CoA carboxylase, biotin carboxylase [Geobacter sp. FRC-32]
 gi|221565427|gb|ACM21399.1| acetyl-CoA carboxylase, biotin carboxylase [Geobacter sp. FRC-32]
          Length = 446

 Score = 91.0 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 81/220 (36%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+     I E   I +      +  L  DK+ ++Q V   GVP+ P    
Sbjct: 77  AIHPGYGFLSENAAFAEICEKCGITFIGPSSESMRLMGDKISARQAVIKEGVPILPGTKE 136

Query: 114 NRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
               ++        I  P +IK   GG   G+ ++    ++P     + +         +
Sbjct: 137 GVNDVNEAVKIAKKIGFPVIIKATAGGGGRGMKIVHSPAALPNAFATARAEAQAGFGNPE 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+Y +    +   V+ D   +V  +            K      + V       ++ 
Sbjct: 197 VYIEKYCENPRHVEIQVLADKHGNVIHLGERDCSIQRRHQKIIEEAPSTVS----TPELR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K +   A  A +A+G   +   +FL D  +   F++E+N 
Sbjct: 253 KIMGDAAVRAAKAVGYNSVGTMEFLVDK-NNDFFFMEMNT 291


>gi|157412411|ref|YP_001483277.1| acetyl-CoA carboxylase biotin carboxylase subunit [Prochlorococcus
           marinus str. MIT 9215]
 gi|157386986|gb|ABV49691.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Prochlorococcus
           marinus str. MIT 9215]
          Length = 449

 Score = 91.0 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 41/220 (18%), Positives = 84/220 (38%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     +     I +      A     DK  +K+ + + GVP  P    
Sbjct: 77  AIHPGYGFLAENDKFAEMCNDHGIVFIGPSPKAIRSMGDKSTAKETMEAVGVPTVPGSKG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSWNHGDQ 165
            +            I  P +IK   GG   G+ +++   ++         ++ +    D 
Sbjct: 137 LLSNIDEAYKLADDIGYPVIIKATAGGGGRGMRLVENSDNLEKMFKAAQGEAEAAFGNDG 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           L +E+++     +   ++ D S +V  +        S + ++  L      PA I  ++ 
Sbjct: 197 LYMEKFIKKPRHVEIQILADRSGNVVHLGERD---CSVQRRHQKLLEESPSPA-INAELR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K++   A  A ++IG  G    +FL D      +++E+N 
Sbjct: 253 KKMGNAAIAAAKSIGYEGAGTVEFLVDDDDN-FYFMEMNT 291


>gi|70731550|ref|YP_261291.1| biotin carboxylase/biotin-containing subunit [Pseudomonas
           fluorescens Pf-5]
 gi|68345849|gb|AAY93455.1| biotin carboxylase/biotin-containing subunit [Pseudomonas
           fluorescens Pf-5]
          Length = 651

 Score = 91.0 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 72/220 (32%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+    A  E   + +      A  L   K RSK  +   GVP       
Sbjct: 79  AIHPGYGFLSENAEFAAACESAGLVFIGPSAAAIELMGSKRRSKIAMLEAGVPCIQGYQG 138

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS-----SWNHGD 164
                         I  P +IK   GG   G+ ++ +   +   +  +      ++   +
Sbjct: 139 AEQDDATLQREAQRIGYPLMIKASAGGGGRGMRLVHQAGQLLEQIRTARSEALHAFGSDE 198

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
            +L +  ++   +   + GD    +  +            K             +  ++ 
Sbjct: 199 LILEQALIEPRHVEVQLFGDEHGQLIYLGERDCSIQRRHQK----VIEEAPCPVMTPELR 254

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +   A  A +A+   G    +FL D    + ++LE+N 
Sbjct: 255 QAMGEAALKAGRAVNYVGAGTVEFLLDAS-GQFYFLEMNT 293


>gi|239931121|ref|ZP_04688074.1| acetyl/propionyl CoA carboxylase alpha subunit [Streptomyces
           ghanaensis ATCC 14672]
          Length = 646

 Score = 91.0 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 84/221 (38%), Gaps = 17/221 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---- 109
            +H  +G   E+           + +      A AL  DK+R+K+ V + GVPV P    
Sbjct: 77  AVHPGYGFLAENAGFARACAEAGLVFIGPPADAIALMGDKIRAKETVRAAGVPVVPGSSG 136

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
           S L +    D+   I  P ++KP  GG   G+ +++   ++  +L  +          D 
Sbjct: 137 SGLSDAQLADAARGIGMPVLLKPSAGGGGKGMRLVRDASALADELAAARREARASFGDDT 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           LL+E+++D    +   V+ D    V  +   +        K             +  +  
Sbjct: 197 LLVERWIDRPRHIEIQVLADGHGGVVHLGERECSLQRRHQKII----EEAPSVLLDEETR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLS-RKVFWLEINV 264
             +   A  A ++ G RG    +F+         +++E+N 
Sbjct: 253 AAMGEAAVQAARSCGYRGAGTVEFIVPGGDPSSYYFMEMNT 293


>gi|33596788|ref|NP_884431.1| biotin carboxylase [Bordetella parapertussis 12822]
 gi|33573489|emb|CAE37475.1| biotin carboxylase [Bordetella parapertussis]
          Length = 456

 Score = 91.0 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 42/223 (18%), Positives = 85/223 (38%), Gaps = 23/223 (10%)

Query: 57  VLHGNFG-----EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
            +H  +G     ED   QA ++   I +      A  +  DK +++++    GVP+ P  
Sbjct: 78  AIHPGYGFLSENED-FAQACID-AGIVFIGPDPGAIRMMGDKAQARKIAKEAGVPIVPGA 135

Query: 112 LVNRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS-----SWNH 162
                 ++        +  P ++K   GG   G+ VI+ +  +   L ++S     ++  
Sbjct: 136 PEPVSDVEEAIKVAREVGYPLLVKAAAGGDGRGMRVIQGEAQLREGLERASMEAKSAFG- 194

Query: 163 GDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL 221
              + IE+Y+     +   V GD   DV  +   +        K             +  
Sbjct: 195 DGSVYIERYISPVRHVEIQVFGDGE-DVIHLGERECSIQRRHQKLL----EESPSPVLSE 249

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +  + +   A    +A+  RG    +F+ D  S + F++E+N 
Sbjct: 250 ETRQRMGEAACALARAVKYRGAGTLEFVMDGKSGEFFFIEMNT 292


>gi|291612552|ref|YP_003522709.1| urea carboxylase [Sideroxydans lithotrophicus ES-1]
 gi|291582664|gb|ADE10322.1| urea carboxylase [Sideroxydans lithotrophicus ES-1]
          Length = 1207

 Score = 90.6 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 42/256 (16%), Positives = 88/256 (34%), Gaps = 30/256 (11%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--I 111
            +H  +G   E+           + +             K  ++++    GVP+ P   +
Sbjct: 77  AIHPGYGFLSENAAFAEQCAEAGVVFIGPTPDQMRRFGLKHTAREIAEKNGVPLLPGSGL 136

Query: 112 LVNRFTMDSQH-LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGDQL 166
           LV+     ++   I  P +IK   GG  +G+ +      +          + +      +
Sbjct: 137 LVDAGHAHAEASRIGYPVMIKSTAGGGGIGMRLCWSADELNEAFQSVERLARANFKDAGI 196

Query: 167 LIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
            +E+YV+    +   + GD    V  +            K             I  ++ +
Sbjct: 197 YLEKYVEQARHIEVQLFGDGKGTVIALGERDCSVQRRNQK----VIEETPAPNITPEVRQ 252

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285
            +   A    +A+G +     +F+FD LS + ++LE+N             +    G + 
Sbjct: 253 HLLETAVRLGKAVGYQSAGTVEFVFDALSGEFYFLEVNT-----------RLQVEHGVTE 301

Query: 286 R----ELLLWMVEDAS 297
                +L+ WMV  A+
Sbjct: 302 EVTGVDLVEWMVLQAA 317


>gi|167750665|ref|ZP_02422792.1| hypothetical protein EUBSIR_01642 [Eubacterium siraeum DSM 15702]
 gi|167656344|gb|EDS00474.1| hypothetical protein EUBSIR_01642 [Eubacterium siraeum DSM 15702]
 gi|291558253|emb|CBL35370.1| acetyl-CoA carboxylase, biotin carboxylase [Eubacterium siraeum
           V10Sc8a]
          Length = 449

 Score = 90.6 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 38/219 (17%), Positives = 82/219 (37%), Gaps = 17/219 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  FG   E+     + +   I +   G  A     DK  +K+ +    VPV P    
Sbjct: 77  AIHPGFGFLSENSHFVRLCDKCGIKFIGPGADAMDAMGDKANAKKTMIENDVPVVPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGDQ 165
            +       +    I  P ++K   GG   GI +++K + +   +     ++  +   D 
Sbjct: 137 VVGTLEEAQEIAAKIGYPIMVKASAGGGGRGIRLVEKPEELEAAMTAAKQEAKQFFANDD 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+++ +   +   ++ D   +V  +            K    + + ++      D+ 
Sbjct: 197 IYIEKFIVNPRHVEIQLLADEHGNVIYLGERDCSLQRRNQKVLEESPSPIM----TEDLR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
           + +   A  A +A G       +FL D      +++E+N
Sbjct: 253 RRMGEAAVRAAKACGYANAGTVEFLVDK-DLNFYFMEMN 290


>gi|157692554|ref|YP_001487016.1| acetyl-CoA carboxylase alpha subunit [Bacillus pumilus SAFR-032]
 gi|157681312|gb|ABV62456.1| acetyl-CoA carboxylase alpha subunit [Bacillus pumilus SAFR-032]
          Length = 449

 Score = 90.6 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 33/220 (15%), Positives = 82/220 (37%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+           I +            +K+ +++ +   G+P+ P +  
Sbjct: 77  AIHPGYGLLSENAAFAERCRSEGIAFIGPSAQVIQCMGNKIEARKTMDQAGIPIVPGVSA 136

Query: 114 NRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
             +  +        +  P ++K   GG  +G+ +++ D+ +         ++ S+ +   
Sbjct: 137 PLYDAEEGVSKAQSLGYPIMLKASSGGGGIGMQLVRNDEELRKAFEGNQKRAQSFFNDGT 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           L +E+ + D   +   V+ D+      +            K           A +   + 
Sbjct: 197 LYMEKVIEDARHIEIQVLFDSFGHGVHLFERDCSLQRRHQKII----EEAPAACLDKSVR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +E+ ++A  A +AIG       + L D  ++  ++LE+N 
Sbjct: 253 QEMGQMAVKAAKAIGYENAGTIECLVD-QNQHFYFLEMNT 291


>gi|83414147|dbj|BAE53864.1| D-alanine:D-alanine ligase [Streptococcus gordonii]
 gi|83414149|dbj|BAE53865.1| D-alanine:D-alanine ligase [Streptococcus gordonii]
 gi|83414153|dbj|BAE53867.1| D-alanine:D-alanine ligase [Streptococcus gordonii]
 gi|83414155|dbj|BAE53868.1| D-alanine:D-alanine ligase [Streptococcus gordonii]
 gi|83414157|dbj|BAE53869.1| D-alanine:D-alanine ligase [Streptococcus gordonii]
 gi|83414159|dbj|BAE53870.1| D-alanine:D-alanine ligase [Streptococcus gordonii]
          Length = 96

 Score = 90.6 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 28/95 (29%), Positives = 50/95 (52%), Gaps = 2/95 (2%)

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTH 213
              ++ +  ++L+EQ V   E+  G++G+A +  +     V    FY Y+ KY     T 
Sbjct: 2   LELAFKYDSRVLVEQGVTAREIEVGLLGNADVKSSLPGEVVKDVAFYDYQAKYIDNKITM 61

Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
            +PA++P  +   +++ A  A +AIG  G+SR DF
Sbjct: 62  AIPAQLPEGVVNTMRQNAETAFRAIGGLGLSRCDF 96


>gi|254714009|ref|ZP_05175820.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella ceti
           M644/93/1]
          Length = 281

 Score = 90.6 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 43/209 (20%), Positives = 82/209 (39%), Gaps = 18/209 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---- 109
            +H  +G   E+     ILE  +I +         +  DK+ +K+     G+PV P    
Sbjct: 77  AIHPGYGFLSENAKFAEILEAHDITFIGPTASHIRIMGDKIEAKRTAKRLGIPVVPGSDG 136

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
            +            I  P +IK   GG   G+ V +  + +P+ L     ++ +    D 
Sbjct: 137 GVTDEVEAARIAKEIGYPVIIKASAGGGGRGMKVARSAEELPIALATARSEAGAAFGDDA 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELK-YSSLNSTHVLPAKIPLDI 223
           + IE+Y++    +   VMGD + +   +            K +   NS    PA +  + 
Sbjct: 197 VYIEKYLEKPRHIEVQVMGDGAGNAVHLGERDCSLQRRHQKVWEEGNS----PA-LNAEA 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            +++  +   A   +G RG    +FL++ 
Sbjct: 252 REKIGMICANACAELGYRGAGTIEFLYED 280


>gi|297199865|ref|ZP_06917262.1| acetyl-CoA carboxylase, biotin carboxylase [Streptomyces sviceus
           ATCC 29083]
 gi|197710330|gb|EDY54364.1| acetyl-CoA carboxylase, biotin carboxylase [Streptomyces sviceus
           ATCC 29083]
          Length = 637

 Score = 90.6 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 42/217 (19%), Positives = 85/217 (39%), Gaps = 14/217 (6%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+           + +      A AL  DK+R+K+ V + GVPV P    
Sbjct: 77  AVHPGYGFLAENAAFARACADAGLVFIGPPADAIALMGDKIRAKETVEAAGVPVVPG-GR 135

Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK----DQSIPLDLLQSSSWNHGDQLLIE 169
           +   +++   +  P ++KP  GG   G+ +++     ++ I     ++ +    D LL+E
Sbjct: 136 DPELVEAARALGAPVLLKPSAGGGGKGMRLVRDLTVLEEEIAAARREARTSFGDDTLLVE 195

Query: 170 QYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           ++VD    +   V+ D   +V  +   +        K             +  D    + 
Sbjct: 196 RWVDRPRHIEIQVLADGHGNVIHLGERECSLQRRHQKII----EEAPSVLLDEDTRASMG 251

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLS-RKVFWLEINV 264
             A  A ++ G RG    +F+         +++E+N 
Sbjct: 252 EAAVEAARSCGYRGAGTVEFIVPGDDPSSYYFMEMNT 288


>gi|257059318|ref|YP_003137206.1| acetyl-CoA carboxylase biotin carboxylase subunit [Cyanothece sp.
           PCC 8802]
 gi|256589484|gb|ACV00371.1| acetyl-CoA carboxylase, biotin carboxylase [Cyanothece sp. PCC
           8802]
          Length = 449

 Score = 90.6 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 78/220 (35%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     I    +I +      A     DK  +K+ +   GVP  P    
Sbjct: 78  AIHPGYGFLAENAKFSEICADHQITFIGPSPEAIRAMGDKSTAKKTMQKAGVPTVPGSWG 137

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
            I   +   +    I  P +IK   GG   G+ ++++D            ++ +      
Sbjct: 138 VIETEQEAQEIARDIGYPVMIKATAGGGGRGMRLVREDSEFSRAFQSAQGEAEAAFGNKG 197

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E++++    +   ++ D+  +V  +            K             +  ++ 
Sbjct: 198 VYLEKFIERPRHIEFQILADSQGNVVHLGERDCSIQRRHQKLL----EEAPSPFLTPELR 253

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            ++   A  A ++I   G    +FL D      +++E+N 
Sbjct: 254 LKMGEAAVKAAKSIDYVGAGTVEFLVDNQGN-FYFMEMNT 292


>gi|193873036|gb|ACF23208.1| D-alanine-D-alanine ligase [Streptococcus infantis]
          Length = 96

 Score = 90.6 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 30/96 (31%), Positives = 50/96 (52%), Gaps = 2/96 (2%)

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNST 212
               ++ +  ++L+EQ V+  E+  G++G+  +  T     V    FY Y+ KY     T
Sbjct: 1   ALELAFKYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKIT 60

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
             +PAKI  D+   +++ A  A +AIG  G+SR DF
Sbjct: 61  MDIPAKISDDVIALMRKNAETAFRAIGGLGLSRCDF 96


>gi|193872936|gb|ACF23158.1| D-alanine-D-alanine ligase [Streptococcus oralis]
          Length = 96

 Score = 90.6 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 30/96 (31%), Positives = 50/96 (52%), Gaps = 2/96 (2%)

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNST 212
               ++ +  ++L+EQ V+  E+  G++G+  +  T     V    FY Y+ KY     T
Sbjct: 1   ALELAFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKIT 60

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
             +PA+I  D+   ++R A  A +AIG  G+SR DF
Sbjct: 61  MDIPARISDDVVAVMRRNAETAFRAIGGLGLSRCDF 96


>gi|309805595|ref|ZP_07699638.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus iners
           LactinV 09V1-c]
 gi|308165096|gb|EFO67336.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus iners
           LactinV 09V1-c]
          Length = 1055

 Score = 90.6 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 47/297 (15%), Positives = 105/297 (35%), Gaps = 38/297 (12%)

Query: 22  CASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ--- 69
           C  AL+  G+K   I         D   S  L    +  +   N++     E  ++Q   
Sbjct: 577 CVKALQKLGYKAIVINSNPETVSTDFSISDKLYFEPITLEDVLNIVDIEKPEGVIIQFGA 636

Query: 70  -------AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDS 120
                  A L+   +    + +     + D+    QV+ + G+     +        +D+
Sbjct: 637 QTAINLAAGLKEHGVKILGTDVEDINRAEDREEFDQVIKNLGLKQPKGLTATTRQGVIDA 696

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +++P        + ++  +  +   L  ++   +   +L++ Y+DG E    
Sbjct: 697 AIKIGYPVLVRPSYVLGGKAMEIVYNEAELQEYLDNNAYITNDHPILVDDYLDGKECDVD 756

Query: 181 VMGDAS---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQ 236
            + D     +      V  +  +S        +S  V P +    DI +++  +      
Sbjct: 757 AISDGVDILIPGIMEHVEHAGVHS-------GDSMAVYPPQSFSDDIQQKICEVTRKLAI 809

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           A+ C+GI    F+       V+ +E+N +   T     P ++   G    ++   ++
Sbjct: 810 ALKCQGIMNIQFIVR--DNDVYVIEVNPRASRT----VPFLSKITGIEMVQVATKII 860



 Score = 73.2 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 50/323 (15%), Positives = 108/323 (33%), Gaps = 48/323 (14%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI---------DVD------------RSVGLV 45
           G ++E + S   G     AL + G++V  +         D +             ++  +
Sbjct: 21  GQAAEFDYS---GTQACLALREEGYEVILVNSNPATIMTDTEIADKVYLEPLTVEALTRI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +    PD     L G  G +  +      IL+ L I    + + +   + D+   K++  
Sbjct: 78  IYQEYPDAILPTLGGQNGLNMALALSKTGILDKLNIELLGTKLKSIEQAEDREEFKKLCK 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G PV PS+ V+     +     I  P +++P       G  +    + +   + +   
Sbjct: 138 QLGEPVPPSLTVHNAEDALAFAEKIGYPIIVRPAFTMGGTGGGICNNRKELATVVARGLD 197

Query: 160 WNHGDQLLIEQYVDG---IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216
            +   + LIE+ + G   IE         +  +            +     + +S    P
Sbjct: 198 LSPVTECLIEKSIAGYKEIEFEVMRDCTDNCMIVCCMENFDPVGIH-----TGDSIVFSP 252

Query: 217 AK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV-------QPGM 268
           ++ +    Y+ ++  +    +A+   G        +P S     +E+N            
Sbjct: 253 SQTLSDKEYQMLRDCSLNLIRALKIEGGCNVQLALNPNSFDYDVIEVNPRVSRSSALASK 312

Query: 269 TPVSIFPEMAA--YAGYSFRELL 289
                  +MAA    G +  E++
Sbjct: 313 ATGYPIAKMAAKIAVGMTLDEII 335


>gi|271967673|ref|YP_003341869.1| 3-methylcrotonoyl-CoA carboxylase subunit alpha [Streptosporangium
           roseum DSM 43021]
 gi|270510848|gb|ACZ89126.1| 3-methylcrotonoyl-CoA carboxylase, alpha subunit [Streptosporangium
           roseum DSM 43021]
          Length = 656

 Score = 90.6 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 52/267 (19%), Positives = 99/267 (37%), Gaps = 23/267 (8%)

Query: 12  REVSLSS-GKACASALEDAGFKVSQ----IDVDRSVGLVLAHLKPDLAFNVLHGNFG--- 63
           R V++ S   A A  + +A   V      +D+DR +    A     +     H  +G   
Sbjct: 28  RSVAVHSDADAGARHVREADIAVRLGGGYLDIDRILDAAAATGAQAV-----HPGYGFLA 82

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ-H 122
           E+           + +      A     DK+R+K  VS+ GVPV P        + +   
Sbjct: 83  ENTAFARRCAEAGLVFVGPPPEAIEAMGDKIRAKATVSAAGVPVVPGGAEPGDDLAAAAE 142

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQLLIEQYVD-GIEL 177
            +  P +IKP  GG   G+++++    +P  L      +++      LLIE++V+    +
Sbjct: 143 RVGFPALIKPSAGGGGKGMVLVRTAAELPDALESARRTAAAAFGDATLLIERFVENPRHI 202

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
              VM D   +V  +   +        K             +       +   A  A ++
Sbjct: 203 EIQVMADTHGNVVHLGERECSLQRRHQKII----EEAPSPLLDAATRASMGAAAVEAARS 258

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINV 264
           +G  G    +F+    +   +++E+N 
Sbjct: 259 VGYVGAGTVEFIVQGATGDYYFMEMNT 285


>gi|83414061|dbj|BAE53821.1| D-alanine:D-alanine ligase [Streptococcus oralis]
 gi|193872904|gb|ACF23142.1| D-alanine-D-alanine ligase [Streptococcus infantis]
 gi|193872934|gb|ACF23157.1| D-alanine-D-alanine ligase [Streptococcus oralis]
          Length = 96

 Score = 90.6 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 30/96 (31%), Positives = 50/96 (52%), Gaps = 2/96 (2%)

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNST 212
               ++ +  ++L+EQ V+  E+  G++G+  +  T     V    FY Y+ KY     T
Sbjct: 1   ALELAFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKIT 60

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
             +PAKI  D+   +++ A  A +AIG  G+SR DF
Sbjct: 61  MDIPAKISDDVVAIMRQNAETAFRAIGGLGLSRCDF 96


>gi|118378204|ref|XP_001022278.1| Carbamoyl-phosphate synthase L chain, ATP binding domain containing
           protein [Tetrahymena thermophila]
 gi|89304045|gb|EAS02033.1| Carbamoyl-phosphate synthase L chain, ATP binding domain containing
           protein [Tetrahymena thermophila SB210]
          Length = 673

 Score = 90.6 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 82/221 (37%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  FG   E+          +I +      A      K  SK ++++  VPV P    
Sbjct: 77  AIHPGFGFLSENADFADECTTNKIIFVGPPTDAIRKMGSKSESKIIMTNAKVPVVPGYHG 136

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS-----SWNHGD 164
                D        I  P +IK + GG   G+ ++ K+      L  +      ++   D
Sbjct: 137 ENQDKDYLFEQARSIGFPVLIKAVLGGGGKGMRIVTKESEFFEALESAKRESLKAFK-DD 195

Query: 165 QLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           ++LIE+Y+     +   V GD   +   +            K          P+ I  D+
Sbjct: 196 RVLIEKYIQKPRHIEVQVFGDHHGNYVHLFERDCSIQRRHQK-----VIEEAPSNINWDL 250

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              +   A  A +A+G       +F+FD +S + +++E+N 
Sbjct: 251 RNSIGSSAVDAAKAVGYYNAGTVEFIFDLISNQYYFMEMNT 291


>gi|284517204|gb|ADB92102.1| D-alanyl-D-alanine ligase [Paenibacillus popilliae]
          Length = 65

 Score = 90.6 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 1/63 (1%)

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            ++A+GC+G+SR D      + ++   E+N  PG T  S +P M A AG +   L+   +
Sbjct: 1   IYKALGCKGLSRVDMFLQE-NGRIILNEVNTLPGFTAYSRYPRMMAAAGMTLSGLIDHCI 59

Query: 294 EDA 296
             A
Sbjct: 60  TLA 62


>gi|193872994|gb|ACF23187.1| D-alanine-D-alanine ligase [Streptococcus mitis]
          Length = 96

 Score = 90.6 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 31/96 (32%), Positives = 50/96 (52%), Gaps = 2/96 (2%)

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNST 212
               ++ +  ++L+EQ V+  E+  G++G+  +  T     V    FY Y+ KY     T
Sbjct: 1   ALELAFRYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKIT 60

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
             +PAKI  D+   ++R A  A +AIG  G+SR DF
Sbjct: 61  MDIPAKISDDVIAVMRRNAETAFRAIGGLGLSRCDF 96


>gi|83414049|dbj|BAE53815.1| D-alanine:D-alanine ligase [Streptococcus oralis]
 gi|83414051|dbj|BAE53816.1| D-alanine:D-alanine ligase [Streptococcus oralis]
 gi|83414057|dbj|BAE53819.1| D-alanine:D-alanine ligase [Streptococcus oralis]
 gi|83414059|dbj|BAE53820.1| D-alanine:D-alanine ligase [Streptococcus oralis]
 gi|83414065|dbj|BAE53823.1| D-alanine:D-alanine ligase [Streptococcus oralis]
 gi|83414095|dbj|BAE53838.1| D-alanine:D-alanine ligase [Streptococcus oralis]
 gi|83414097|dbj|BAE53839.1| D-alanine:D-alanine ligase [Streptococcus oralis]
 gi|193873058|gb|ACF23219.1| D-alanine-D-alanine ligase [Streptococcus oralis]
 gi|193873062|gb|ACF23221.1| D-alanine-D-alanine ligase [Streptococcus oralis]
 gi|193873064|gb|ACF23222.1| D-alanine-D-alanine ligase [Streptococcus oralis]
 gi|193873066|gb|ACF23223.1| D-alanine-D-alanine ligase [Streptococcus oralis]
          Length = 96

 Score = 90.6 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 31/96 (32%), Positives = 50/96 (52%), Gaps = 2/96 (2%)

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNST 212
               ++ +  ++L+EQ V+  E+  G++G+  +  T     V    FY Y+ KY     T
Sbjct: 1   ALELAFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKIT 60

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
             +PAKI  D+   ++R A  A +AIG  G+SR DF
Sbjct: 61  MDIPAKISDDVVAIMRRNAETAFRAIGGLGLSRCDF 96


>gi|323702767|ref|ZP_08114427.1| acetyl-CoA carboxylase, biotin carboxylase [Desulfotomaculum
           nigrificans DSM 574]
 gi|323532284|gb|EGB22163.1| acetyl-CoA carboxylase, biotin carboxylase [Desulfotomaculum
           nigrificans DSM 574]
          Length = 449

 Score = 90.6 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 79/220 (35%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     I E   I +      A     +K  ++  +   GVPV P    
Sbjct: 77  AIHPGYGFLAENANFAEICEDCGITFIGPSAHAIEYMGNKALARSTMIEAGVPVVPGSEG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGDQ 165
            I      +     I  P +IK   GG   G+ V   ++ +   +     ++ +      
Sbjct: 137 AIKDVEEALKVAQEIGYPVLIKASAGGGGRGMRVAHSEEDLLKAINTAQAEAQAAFGNGD 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+YV+    +   ++GD   ++  +            K             +   + 
Sbjct: 197 VYLEKYVEQPRHIEFQILGDKEGNIVYLGERDCSIQRRNQK----VIEEAPSTALTPSLR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +++  +A  A +A+G       +FL D    K +++E+N 
Sbjct: 253 RKMGEMAVKAAKAVGYYNAGTVEFLLDKH-NKFYFIEMNT 291


>gi|116805327|ref|NP_064551.3| methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial
           precursor [Homo sapiens]
 gi|108861983|sp|Q96RQ3|MCCA_HUMAN RecName: Full=Methylcrotonoyl-CoA carboxylase subunit alpha,
           mitochondrial; Short=MCCase subunit alpha; AltName:
           Full=3-methylcrotonyl-CoA carboxylase 1; AltName:
           Full=3-methylcrotonyl-CoA carboxylase biotin-containing
           subunit; AltName: Full=3-methylcrotonyl-CoA:carbon
           dioxide ligase subunit alpha; Flags: Precursor
 gi|12382296|gb|AAG53095.1|AF310972_1 3-methylcrotonyl-CoA carboxylase alpha subunit [Homo sapiens]
 gi|9049352|dbj|BAA99407.1| 3-methylcrotonyl-CoA carboxylase biotin-containing subunit [Homo
           sapiens]
          Length = 725

 Score = 90.6 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 82/221 (37%), Gaps = 19/221 (8%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H   G   E+     + +   I +      A      K  SK ++++ GVPV      
Sbjct: 124 AIHPGCGFLSENMEFAELCKQEGIIFIGPPPSAIRDMGIKSTSKSIMAAAGVPVVEGYHG 183

Query: 113 ---VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
               ++   +    I  P +IK ++GG   G+ +++ +Q     L  +          D 
Sbjct: 184 EDQSDQCLKEHARRIGYPVMIKAVRGGGGKGMRIVRSEQEFQEQLESARREAKKSFNDDA 243

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           +LIE++VD    +   V GD   +   +           ++          PA  I  ++
Sbjct: 244 MLIEKFVDTPRHVEVQVFGDHHGNAVYL-----FERDCSVQRRHQKIIEEAPAPGIKSEV 298

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            K++   A  A +A+   G    +F+ D       ++E+N 
Sbjct: 299 RKKLGEAAVRAAKAVNYVGAGTVEFIMDSKHN-FCFMEMNT 338


>gi|20804025|emb|CAD31602.1| PUTATIVE LIGASE/CARBOXYLASE PROTEIN [Mesorhizobium loti R7A]
          Length = 411

 Score = 90.6 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 55/289 (19%), Positives = 106/289 (36%), Gaps = 38/289 (13%)

Query: 23  ASALEDAGFKVSQIDVD--RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQA----ILELLE 76
              L   G +  ++D D   ++    + L+       + G  G+D  V A    +    +
Sbjct: 40  YDYLAAEGIEAIRVDTDNLDALIHECSRLRATYEIAGITGFAGDDESVSATVGKLCRHFD 99

Query: 77  IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--QHLISPPYVIKPLK 134
           +P       +     DK   +Q++S  GVP+    L    T        I  P V+KP  
Sbjct: 100 LP--GPNPASIERCCDKFTQRQLLSEAGVPIPAYRLAANATEVESCAAEIGLPVVLKPAV 157

Query: 135 GGSSLGIIVIKKDQSIPLD----LLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190
           G  S+G+ + +  + +       L    +W    ++L+E++  G      VMG+  L + 
Sbjct: 158 GSGSIGVRLCRSVEEVAEHTTYLLDGKHTWQSSPKILVEEFAQGPYYCTLVMGNEVLGIG 217

Query: 191 ---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
                 +P   F              + PA +  D ++ +  ++    +A+G  G   ++
Sbjct: 218 AADFGPLPHFVFL-----------RSIFPAPVTDDEHRRIADVSLSCLRALGL-GWGPTN 265

Query: 248 FLFDPLSRKVFWLEINV-QPGMTPVSIFPEMAAYA-GYSFRELLLWMVE 294
                  R    +E+N    G T     P +A  A G    +L+   ++
Sbjct: 266 IELRWTRRGPVVIEVNPRLVGGTG----PRLAQAAHGI---DLVTEHIK 307


>gi|14573195|gb|AAK67986.1|AF297332_1 3-methylcrotonyl-CoA carboxylase biotin-containing subunit [Homo
           sapiens]
          Length = 725

 Score = 90.6 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 82/221 (37%), Gaps = 19/221 (8%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H   G   E+     + +   I +      A      K  SK ++++ GVPV      
Sbjct: 124 AIHPGCGFLSENMEFAELCKQEGIIFIGPPPSAIRDMGIKSTSKSIMAAAGVPVVEGYHG 183

Query: 113 ---VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
               ++   +    I  P +IK ++GG   G+ +++ +Q     L  +          D 
Sbjct: 184 EDQSDQCLKEHARRIGYPVMIKAVRGGGGKGMRIVRSEQEFQEQLESARREAKKSFNDDA 243

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           +LIE++VD    +   V GD   +   +           ++          PA  I  ++
Sbjct: 244 MLIEKFVDTPRHVEVQVFGDHHGNAVYL-----FERDCSVQRRHQKIIEEAPAPGIKSEV 298

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            K++   A  A +A+   G    +F+ D       ++E+N 
Sbjct: 299 RKKLGEAAVRAAKAVNYVGAGTVEFIMDSKHN-FCFMEMNT 338


>gi|12276066|gb|AAG50245.1|AF310339_1 3-methylcrotonyl-CoA carboxylase alpha subunit [Homo sapiens]
 gi|10434789|dbj|BAB14377.1| unnamed protein product [Homo sapiens]
 gi|13278846|gb|AAH04187.1| Methylcrotonoyl-Coenzyme A carboxylase 1 (alpha) [Homo sapiens]
 gi|13278915|gb|AAH04214.1| Methylcrotonoyl-Coenzyme A carboxylase 1 (alpha) [Homo sapiens]
 gi|119598746|gb|EAW78340.1| methylcrotonoyl-Coenzyme A carboxylase 1 (alpha), isoform CRA_b
           [Homo sapiens]
          Length = 725

 Score = 90.6 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 82/221 (37%), Gaps = 19/221 (8%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H   G   E+     + +   I +      A      K  SK ++++ GVPV      
Sbjct: 124 AIHPGCGFLSENMEFAELCKQEGIIFIGPPPSAIRDMGIKSTSKSIMAAAGVPVVEGYHG 183

Query: 113 ---VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
               ++   +    I  P +IK ++GG   G+ +++ +Q     L  +          D 
Sbjct: 184 EDQSDQCLKEHARRIGYPVMIKAVRGGGGKGMRIVRSEQEFQEQLESARREAKKSFNDDA 243

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           +LIE++VD    +   V GD   +   +           ++          PA  I  ++
Sbjct: 244 MLIEKFVDTPRHVEVQVFGDHHGNAVYL-----FERDCSVQRRHQKIIEEAPAPGIKSEV 298

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            K++   A  A +A+   G    +F+ D       ++E+N 
Sbjct: 299 RKKLGEAAVRAAKAVNYVGAGTVEFIMDSKHN-FCFMEMNT 338


>gi|193872890|gb|ACF23135.1| D-alanine-D-alanine ligase [Streptococcus mitis]
 gi|193872942|gb|ACF23161.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|193872944|gb|ACF23162.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|193872946|gb|ACF23163.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|193872948|gb|ACF23164.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|193872950|gb|ACF23165.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|193872952|gb|ACF23166.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|193872964|gb|ACF23172.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|193872966|gb|ACF23173.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|193873042|gb|ACF23211.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|193873044|gb|ACF23212.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|193873088|gb|ACF23234.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
          Length = 96

 Score = 90.6 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 30/96 (31%), Positives = 50/96 (52%), Gaps = 2/96 (2%)

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNST 212
               ++ +  ++L+EQ V+  E+  G++G+  +  T     V    FY Y+ KY     T
Sbjct: 1   ALELAFRYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKIT 60

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
             +PAKI  D+   +++ A  A +AIG  G+SR DF
Sbjct: 61  MDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDF 96


>gi|254472985|ref|ZP_05086383.1| pyruvate carboxylase [Pseudovibrio sp. JE062]
 gi|211957706|gb|EEA92908.1| pyruvate carboxylase [Pseudovibrio sp. JE062]
          Length = 1148

 Score = 90.6 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 39/237 (16%), Positives = 88/237 (37%), Gaps = 22/237 (9%)

Query: 41  SVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSK 97
            +  V    + D     +H  +G   E            I +            +K+ ++
Sbjct: 67  EIIRVAKEQRVD----AIHPGYGFLSESPEFAEACAENGIIFIGPSPETMRRLGNKVSAR 122

Query: 98  QVVSSCGVPVCPSILVNRFTMDSQHLI----SPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153
           ++    GVPV P+       M+    +      P ++K   GG   G+ VIK ++++  +
Sbjct: 123 ELAIKAGVPVMPATDPLPDDMEEIKRLALEIGYPVMLKASWGGGGRGMRVIKDEETLERE 182

Query: 154 LLQSSSWNH----GDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS 208
           ++++          D++ +E+ V+    +   ++GD   ++  +            K   
Sbjct: 183 VVEAKREARAAFGKDEVYLEKLVERARHVEVQILGDQHGNLVHLFERDCSIQRRHQK--- 239

Query: 209 LNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
                  PA  +  +  +E+        + +G  G    +FL D  + KV+++E+N 
Sbjct: 240 --VVERAPAPYLDEEKRRELCEYGLKIGREVGYCGAGTVEFLMDADTGKVYFIEVNP 294


>gi|193873016|gb|ACF23198.1| D-alanine-D-alanine ligase [Streptococcus mitis]
          Length = 96

 Score = 90.6 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 50/96 (52%), Gaps = 2/96 (2%)

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNST 212
               ++ +  ++L+EQ V+  E+  G++G+ ++  T     V    FY Y+ KY     T
Sbjct: 1   ALKLAFQYDSRVLVEQGVNAREIEVGLLGNYNVKSTLPGEVVKDVAFYDYDAKYIDNKIT 60

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
             +PA I  D+   +++ A  A +AIG  G+SR DF
Sbjct: 61  MDIPANISDDVVAVMRQNAETAFRAIGGLGLSRCDF 96


>gi|296109365|ref|YP_003616314.1| carbamoyl-phosphate synthase, large subunit [Methanocaldococcus
           infernus ME]
 gi|295434179|gb|ADG13350.1| carbamoyl-phosphate synthase, large subunit [Methanocaldococcus
           infernus ME]
          Length = 1058

 Score = 90.6 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 53/278 (19%), Positives = 104/278 (37%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL   G++V  +         D D              +  ++   +PD    
Sbjct: 29  SGSQACKALRKLGYEVVLVNSNPATIMTDTDMADRVYIEPLTSEVLEKIIEKERPDAILP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G    +  V+     IL+  ++    + + A     D+   K+     GV V  S  
Sbjct: 89  TLGGQTALNLAVELAEKGILDKYDVELIGANLEAIKRGEDRELFKECCKKAGVEVLRSKT 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           V      ++    I  P V++P       G  +    + +   + +   ++  +Q+LIE+
Sbjct: 149 VFSVDEALEFAEEIGYPIVVRPAFTLGGTGGGIAYNPEELKEIVSKGLEYSLKNQVLIEE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            V G  E    V+ D + +V  I   ++ D           +S  V PA+ +  + Y+++
Sbjct: 209 SVLGWKEFEYEVIRDKNDNVIIICTIENMDPMGVHT----GDSITVAPAQTLSDEEYQKM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    +A+G   G S   F  +P   ++  +E+N 
Sbjct: 265 RDYSIKIIRAVGVETGGSNIQFALNPKDGRIVAIEMNP 302



 Score = 64.0 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 38/290 (13%), Positives = 104/290 (35%), Gaps = 38/290 (13%)

Query: 23  ASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLV----- 68
             A+++ G++   +         D D +  L    L  +   N++      DG++     
Sbjct: 576 IKAVQEEGYEAIMVNCNPETVSTDYDTADKLYFDPLYWEDVLNIVENEK-PDGVIVQVGG 634

Query: 69  ------QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTMDS 120
                    LE   I    +   +  L+ D+ +  +++    +P  P+ +       +  
Sbjct: 635 QTPLNLAKYLENYII---GTSKESIDLAEDREKFAKILEELNIPQPPNGIAYNEEEALKI 691

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTC 179
              I  P +++P        + ++  ++ +   + ++   +    +LI++++ D  E+  
Sbjct: 692 AKEIGYPVLVRPSYVLGGRAMRIVYNEEELKEYIKEAVEVSEEHPVLIDKFLEDATEVDV 751

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAI 238
             + D    +    +   +    E    S +S  V+P + +  ++ + ++         +
Sbjct: 752 DAICDGESVLIGGIMEHIE----EAGVHSGDSACVIPPQTLSKEVIEIIKDYTRKIALKL 807

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
             +G+    +       KV+ LE N +   T     P ++   G    ++
Sbjct: 808 NVKGLINIQYAI--KDDKVYVLEANPRASRT----VPFLSKAIGLPLAKI 851


>gi|193872868|gb|ACF23124.1| D-alanine-D-alanine ligase [Streptococcus mitis]
          Length = 96

 Score = 90.6 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 30/96 (31%), Positives = 50/96 (52%), Gaps = 2/96 (2%)

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA--VPKSDFYSYELKYSSLNST 212
               ++ +  ++L+EQ V+  E+  G++G+  +  T     V    FY Y+ KY     T
Sbjct: 1   ALKLAFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGRIVKDVAFYDYDAKYIDNKIT 60

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
             +PAKI  D+   +++ A  A +AIG  G+SR DF
Sbjct: 61  MDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDF 96


>gi|126697587|ref|YP_001086484.1| pyruvate carboxylase [Clostridium difficile 630]
 gi|254973672|ref|ZP_05270144.1| pyruvate carboxylase [Clostridium difficile QCD-66c26]
 gi|255091064|ref|ZP_05320542.1| pyruvate carboxylase [Clostridium difficile CIP 107932]
 gi|255304962|ref|ZP_05349134.1| pyruvate carboxylase [Clostridium difficile ATCC 43255]
 gi|255312717|ref|ZP_05354300.1| pyruvate carboxylase [Clostridium difficile QCD-76w55]
 gi|255515477|ref|ZP_05383153.1| pyruvate carboxylase [Clostridium difficile QCD-97b34]
 gi|255648570|ref|ZP_05395472.1| pyruvate carboxylase [Clostridium difficile QCD-37x79]
 gi|260681790|ref|YP_003213075.1| pyruvate carboxylase [Clostridium difficile CD196]
 gi|260685387|ref|YP_003216520.1| pyruvate carboxylase [Clostridium difficile R20291]
 gi|306518700|ref|ZP_07405047.1| pyruvate carboxylase [Clostridium difficile QCD-32g58]
 gi|115249024|emb|CAJ66835.1| Pyruvate carboxylase [Clostridium difficile]
 gi|260207953|emb|CBA60079.1| pyruvate carboxylase [Clostridium difficile CD196]
 gi|260211403|emb|CBE01480.1| pyruvate carboxylase [Clostridium difficile R20291]
          Length = 1143

 Score = 90.6 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 42/243 (17%), Positives = 89/243 (36%), Gaps = 24/243 (9%)

Query: 35  QIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSM 91
            +D+D  +  +    K D     +H  +G   E+       E   I +         +  
Sbjct: 64  YLDMD-GIIDLAKRKKVD----AIHPGYGFLAENAEFARKCEENGITFIGPSSKVMNMMG 118

Query: 92  DKMRSKQVVSSCGVPVCPSILV----NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147
           DK+ SK++     V   P +           +  + I  P +IK   GG   G+ ++ ++
Sbjct: 119 DKINSKKIAKEVNVQTIPGVEKAIRSTEEAKEVANKIGYPVMIKASNGGGGRGMRIVHRE 178

Query: 148 QSIPLDLLQSSSWNHG----DQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSY 202
           + + L+   + S +      D + IE+Y+ D   +   ++GD   ++  +          
Sbjct: 179 EDLELEYETACSESRKAFGEDIIFIEKYIADPKHIEVQILGDNYGNIVHLYE-----RDC 233

Query: 203 ELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
            ++          PA  +   + KE+   A    + +G       +FL D      +++E
Sbjct: 234 SVQRRHQKIIEYAPAFSLDDKVRKEICEDAVKLSKHVGYSNAGTLEFLVDANGGH-YFIE 292

Query: 262 INV 264
           +N 
Sbjct: 293 MNT 295


>gi|126695409|ref|YP_001090295.1| acetyl-CoA carboxylase biotin carboxylase subunit [Prochlorococcus
           marinus str. MIT 9301]
 gi|126542452|gb|ABO16694.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Prochlorococcus
           marinus str. MIT 9301]
          Length = 449

 Score = 90.6 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 43/220 (19%), Positives = 86/220 (39%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---S 110
            +H  +G   E+     +     I +      A     DK  +K+ + + GVP  P    
Sbjct: 77  AIHPGYGFLAENDKFAEMCNDHGIVFIGPSPKAIRSMGDKSTAKETMEAVGVPTVPGSKG 136

Query: 111 ILVN-RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSWNHGDQ 165
           +L N          I  P +IK   GG   G+ +++   ++         ++ +    D 
Sbjct: 137 LLSNVDEAYKLADDIGYPVIIKATAGGGGRGMRLVENSDNLEKMFKAAQGEAEAAFGNDG 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           L +E+++     +   ++ D S +V  +        S + ++  L      PA I  ++ 
Sbjct: 197 LYMEKFIKKPRHVEIQILADRSGNVVHLGERD---CSVQRRHQKLLEESPSPA-INTELR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K++   A  A ++IG  G    +FL D      +++E+N 
Sbjct: 253 KKMGNAAIAAAKSIGYEGAGTVEFLVDDDDN-FYFMEMNT 291


>gi|83414031|dbj|BAE53806.1| D-alanine:D-alanine ligase [Streptococcus mitis]
 gi|83414035|dbj|BAE53808.1| D-alanine:D-alanine ligase [Streptococcus pseudopneumoniae]
 gi|83414083|dbj|BAE53832.1| D-alanine:D-alanine ligase [Streptococcus oralis]
 gi|83414087|dbj|BAE53834.1| D-alanine:D-alanine ligase [Streptococcus oralis]
 gi|83414089|dbj|BAE53835.1| D-alanine:D-alanine ligase [Streptococcus oralis]
 gi|83414091|dbj|BAE53836.1| D-alanine:D-alanine ligase [Streptococcus oralis]
 gi|83414105|dbj|BAE53843.1| D-alanine:D-alanine ligase [Streptococcus oralis]
 gi|83414113|dbj|BAE53847.1| D-alanine:D-alanine ligase [Streptococcus oralis]
 gi|83414115|dbj|BAE53848.1| D-alanine:D-alanine ligase [Streptococcus oralis]
 gi|83414121|dbj|BAE53851.1| D-alanine:D-alanine ligase [Streptococcus oralis]
 gi|83414123|dbj|BAE53852.1| D-alanine:D-alanine ligase [Streptococcus oralis]
 gi|83415046|dbj|BAE53782.1| D-alanine:D-alanine ligase [Streptococcus pseudopneumoniae]
 gi|193872878|gb|ACF23129.1| D-alanine-D-alanine ligase [Streptococcus mitis]
 gi|193872894|gb|ACF23137.1| D-alanine-D-alanine ligase [Streptococcus mitis]
 gi|193872910|gb|ACF23145.1| D-alanine-D-alanine ligase [Streptococcus oralis]
 gi|193872912|gb|ACF23146.1| D-alanine-D-alanine ligase [Streptococcus oralis]
 gi|193872970|gb|ACF23175.1| D-alanine-D-alanine ligase [Streptococcus sp. SK597]
 gi|193872972|gb|ACF23176.1| D-alanine-D-alanine ligase [Streptococcus mitis]
 gi|193873030|gb|ACF23205.1| D-alanine-D-alanine ligase [Streptococcus pseudopneumoniae]
 gi|193873048|gb|ACF23214.1| D-alanine-D-alanine ligase [Streptococcus pseudopneumoniae ATCC
           BAA-960]
 gi|193873050|gb|ACF23215.1| D-alanine-D-alanine ligase [Streptococcus pseudopneumoniae]
 gi|193873080|gb|ACF23230.1| D-alanine-D-alanine ligase [Streptococcus oralis]
 gi|193873082|gb|ACF23231.1| D-alanine-D-alanine ligase [Streptococcus oralis]
          Length = 96

 Score = 90.6 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 30/96 (31%), Positives = 50/96 (52%), Gaps = 2/96 (2%)

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNST 212
               ++ +  ++L+EQ V+  E+  G++G+  +  T     V    FY Y+ KY     T
Sbjct: 1   ALELAFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKIT 60

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
             +PAKI  D+   +++ A  A +AIG  G+SR DF
Sbjct: 61  MDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDF 96


>gi|83414081|dbj|BAE53831.1| D-alanine:D-alanine ligase [Streptococcus oralis]
          Length = 96

 Score = 90.6 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 31/96 (32%), Positives = 50/96 (52%), Gaps = 2/96 (2%)

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNST 212
               ++ +  ++L+EQ V+  E+  G++G+  +  T     V    FY Y+ KY     T
Sbjct: 1   ALELAFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYHDNKIT 60

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
             +PAKI  D+   ++R A  A +AIG  G+SR DF
Sbjct: 61  MDIPAKISDDVVAVMRRNAETAFRAIGGLGLSRCDF 96


>gi|193872954|gb|ACF23167.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|193872956|gb|ACF23168.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|193872968|gb|ACF23174.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
          Length = 96

 Score = 90.6 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 30/96 (31%), Positives = 50/96 (52%), Gaps = 2/96 (2%)

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNST 212
               ++ +  ++L+EQ V+  E+  G++G+  +  T     V    FY Y+ KY     T
Sbjct: 1   ALKLAFRYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKVT 60

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
             +PAKI  D+   +++ A  A +AIG  G+SR DF
Sbjct: 61  MDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDF 96


>gi|156541114|ref|XP_001601400.1| PREDICTED: similar to Methylcrotonoyl-Coenzyme A carboxylase 1
           (alpha) [Nasonia vitripennis]
          Length = 699

 Score = 90.6 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 42/222 (18%), Positives = 83/222 (37%), Gaps = 20/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H  +G   E+     + +   I +      A      K  SK ++++ GVP+      
Sbjct: 99  AIHPGYGFLSENTEFAELCQKQNIIFIGPPAQAIRDMGIKSTSKAIMAAAGVPIIEGYHG 158

Query: 113 ---VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS-----SWNHGD 164
               N   +     I  P +IK ++GG   G+ + +K+      L  +      ++    
Sbjct: 159 DDQSNEKLLQEAQKIGFPLMIKAVRGGGGKGMRIARKEAEFLQALESARTESQKAFG-DS 217

Query: 165 QLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            +L+EQYV +   +   V  D   +   +           ++          PA  I  +
Sbjct: 218 AVLLEQYVAEPRHVEVQVFADKHGNAVYL-----FERDCSVQRRHQKVIEEAPAPGISEE 272

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +  E+   A  A +A+G  G    +F+ D  + K  ++E+N 
Sbjct: 273 LRVELGEAAVRAAKAVGYVGAGTVEFIMDRHTHKFHFMEMNT 314


>gi|149176613|ref|ZP_01855225.1| pyruvate carboxylase [Planctomyces maris DSM 8797]
 gi|148844492|gb|EDL58843.1| pyruvate carboxylase [Planctomyces maris DSM 8797]
          Length = 1150

 Score = 90.6 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 39/252 (15%), Positives = 94/252 (37%), Gaps = 26/252 (10%)

Query: 28  DAGFKV-SQIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSG 83
             G  V S +D+  ++  +    K D     +H  +G   E+       E   I +    
Sbjct: 57  KPGHPVKSYLDI-EAIIALAKQKKID----AIHPGYGFLSENADFAQACEDAGIIFIGPR 111

Query: 84  ILASALSMDKMRSKQVVSSCGVPV----CPSILVNRFTMDSQHLISPPYVIKPLKGGSSL 139
           +       DK+ ++++    GVPV      +I+       + + I  P ++K   GG   
Sbjct: 112 VETLKALGDKISARKIAQQVGVPVLGGSGEAIVDAASGRKTANEIGFPIILKAAHGGGGR 171

Query: 140 GIIVIKKDQSIPLDLLQS-----SSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIA 193
           G+ V++K++        +     S++   + + +E+++     +   ++GD    +  + 
Sbjct: 172 GMRVVQKEEDFEASYELARSESLSAFG-SEDVFVEKFISRARHIEVQLLGDKHGGLVHLY 230

Query: 194 VPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
                     ++        + PA  +   +   +   A    Q++        +FL D 
Sbjct: 231 E-----RDCSVQRRHQKVVEIAPAPNLDPAVRDALCEAALKIGQSVNYELAGTVEFLLDA 285

Query: 253 LSRKVFWLEINV 264
            + + +++E+N 
Sbjct: 286 DTNQFYFIEVNP 297


>gi|20804029|emb|CAD31606.1| PUTATIVE LIGASE/CARBOXYLASE PROTEIN [Mesorhizobium loti R7A]
          Length = 425

 Score = 90.6 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 52/294 (17%), Positives = 104/294 (35%), Gaps = 32/294 (10%)

Query: 23  ASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNV--LHGNFGEDGLVQA----ILELLE 76
              L   G +   +D D    L+    +    +++  + G  G D  V A    +    +
Sbjct: 40  YDYLAAEGIEAIHVDTDNLSALIHECSRLGATYDIAGITGFTGSDESVSATIGKLCRHFD 99

Query: 77  IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV-NRFTMD-SQHLISPPYVIKPLK 134
           +P       +     DK   +Q++   GVP+    L  N   ++ +   I  P V+KP  
Sbjct: 100 LP--GPNPASIERCCDKFTQRQLLEKAGVPIPAYRLAANAIDVECAAAEIGLPVVLKPAV 157

Query: 135 GGSSLGIIVIKKDQSIPLDLLQ----SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190
           G  S G+ + +    +             W    ++LIE++  G      +MG+  + + 
Sbjct: 158 GSGSSGVRLCRNIDELAEHTAYLLNGKHIWRSSPRILIEEFARGPFYGVDIMGNEVIGIE 217

Query: 191 EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR-GISRSDFL 249
                   ++ +             PA +  D ++ +  ++    +A+G   G +  +  
Sbjct: 218 AGDFGPPPYFVFRH--------LTCPAPLTGDEHRRIADVSLSCLRALGLGWGPTTVELR 269

Query: 250 FDPLSRKVFWLEINV-QPGMTPVSIFPEMAAYA-GYSF-RELLLWMVEDASCLR 300
           +         +E+N    G T     P +   A G     E +  ++ DA  LR
Sbjct: 270 WTKRG--PVVIEVNPRLAGGTS----PRLVQAAYGIDLITEHIKLVIGDAWDLR 317


>gi|163855460|ref|YP_001629758.1| putative biotin carboxylase subunit of propionyl-CoA carboxylase
           [Bordetella petrii DSM 12804]
 gi|163259188|emb|CAP41488.1| putative biotin carboxylase subunit of propionyl-CoA carboxylase
           [Bordetella petrii]
          Length = 671

 Score = 90.6 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 85/220 (38%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+    A +E   + +        A   DK R+K ++ + GVPV P    
Sbjct: 77  AVHPGYGFLSENSEFAANVEAAGMAFIGPSPATIAALGDKARAKALMRAAGVPVVPGTDE 136

Query: 112 -LVNRFTMDS-QHLISPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSWNHGDQ 165
              N  T+++    I  P ++KP  GG   G+ +I +   +P      +  + S     +
Sbjct: 137 ASDNPATIEALARAIELPILLKPSAGGGGKGMQIITQYDDLPGLIESAIRVARSSFGDGR 196

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           +++E+Y++    +   V GD   +V  +   +        K             +P    
Sbjct: 197 MIVERYIEEPRHIEVQVFGDGCGNVVHLFERECSLQRRHQK----VMEEAPAPHLPERAR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +   A    +++  R     +F+ D      ++LE+N 
Sbjct: 253 QRLLEAAVQGARSLDYRNAGTFEFIMD-RDFNCYFLEVNT 291


>gi|13475061|ref|NP_106624.1| hypothetical protein mll6062 [Mesorhizobium loti MAFF303099]
 gi|14025811|dbj|BAB52410.1| mll6062 [Mesorhizobium loti MAFF303099]
          Length = 409

 Score = 90.6 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 42/258 (16%), Positives = 90/258 (34%), Gaps = 25/258 (9%)

Query: 23  ASALEDAGFKVSQIDVDRSVGLVLAHLK----PDLAFNVLHGNFGEDGLVQAILELLEIP 78
              L   G +  ++D      L+    +     D+A             V  +    ++P
Sbjct: 41  YDYLATEGIEAIRVDTGNLDALIRECSRLRATYDIAGITC-AREAFYATVGKLCRHFDLP 99

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV-NRFTMDSQ-HLISPPYVIKPLKGG 136
                  +     DK   +Q+++  GVP+    +  N   ++S    I  P ++KP  G 
Sbjct: 100 --GPNPASIERCCDKFTQRQLLAEAGVPIPAYRMAANAAEVESASEEIGLPVIVKPAVGS 157

Query: 137 SSLGIIVIKKDQSIPLD----LLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192
            S G+ + +    +       L +   W    ++L+E++  G      +MG+  + +   
Sbjct: 158 GSRGVRLCRNVDELAEHTTYLLGEEHIWRSSPRILVEEFAQGPLYGAQIMGNEVIGIEAA 217

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR-GISRSDFLFD 251
                  + Y             PA +  D ++ +  ++    +A+G   G +  +F + 
Sbjct: 218 GFGPPPHFVYR--------EFTFPALLTDDDHERITNVSLSCLRALGLGWGPTGIEFRWT 269

Query: 252 PLSRKVFWLEINV-QPGM 268
                   +E+N    GM
Sbjct: 270 KRG--PVVIEVNPRLAGM 285


>gi|83414039|dbj|BAE53810.1| D-alanine:D-alanine ligase [Streptococcus oralis]
 gi|83414055|dbj|BAE53818.1| D-alanine:D-alanine ligase [Streptococcus oralis]
 gi|83414077|dbj|BAE53829.1| D-alanine:D-alanine ligase [Streptococcus oralis]
 gi|83414079|dbj|BAE53830.1| D-alanine:D-alanine ligase [Streptococcus oralis]
 gi|193872906|gb|ACF23143.1| D-alanine-D-alanine ligase [Streptococcus oralis]
 gi|193872908|gb|ACF23144.1| D-alanine-D-alanine ligase [Streptococcus oralis]
 gi|193872938|gb|ACF23159.1| D-alanine-D-alanine ligase [Streptococcus oralis]
          Length = 96

 Score = 90.6 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 31/96 (32%), Positives = 50/96 (52%), Gaps = 2/96 (2%)

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNST 212
               ++ +  ++L+EQ V+  E+  G++G+  +  T     V    FY Y+ KY     T
Sbjct: 1   ALELAFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKIT 60

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
             +PAKI  D+   ++R A  A +AIG  G+SR DF
Sbjct: 61  MDIPAKISDDVVAVMRRNAETAFRAIGGLGLSRCDF 96


>gi|193872914|gb|ACF23147.1| D-alanine-D-alanine ligase [Streptococcus oralis]
          Length = 96

 Score = 90.6 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 50/96 (52%), Gaps = 2/96 (2%)

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNST 212
               ++ +  ++L+EQ V+  E+  G++G+  +  T     V    FY Y+ KY     T
Sbjct: 1   ALDLAFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKIT 60

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
             +PA+I  D+   +++ A  A +AIG  G+SR DF
Sbjct: 61  MDIPARISDDVVAVMRQNAETAFRAIGGLGLSRCDF 96


>gi|83414161|dbj|BAE53871.1| D-alanine:D-alanine ligase [Streptococcus cristatus]
          Length = 96

 Score = 90.6 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 28/96 (29%), Positives = 50/96 (52%), Gaps = 2/96 (2%)

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNST 212
             + ++ +  ++L+EQ V+  E+  G++G+  +  T     V    FY YE KY     T
Sbjct: 1   ALNLAFKYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDYEAKYIDNKIT 60

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
             +PAKI  +    ++  A  A +A+G +G++R DF
Sbjct: 61  MDIPAKISDEAISIMRTNAETAFRALGGQGLARCDF 96


>gi|91202515|emb|CAJ72154.1| strongly similar to pyruvate carboxylase [Candidatus Kuenenia
           stuttgartiensis]
          Length = 1149

 Score = 90.6 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 36/249 (14%), Positives = 88/249 (35%), Gaps = 23/249 (9%)

Query: 30  GFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILA 86
           G    +  +D    + LA    D   + +H  +G   E+       E   I +       
Sbjct: 58  GKDPVKAYLDIEGIIQLAK---DKGIDAIHPGYGFLSENAGFARACEKAGIVFIGPRSEI 114

Query: 87  SALSMDKMRSKQVVSSCGVPVC---PSILVNRFTMDSQH-LISPPYVIKPLKGGSSLGII 142
             L  +K+ ++Q+     VP+       + +     +    +  P +IK   GG   G+ 
Sbjct: 115 LELLGNKISARQIAGQAQVPILSGNKYPIRHPDEAKAFCREVGYPVIIKAANGGGGRGMR 174

Query: 143 VIKKDQSI-----PLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPK 196
           ++  +  +            +++ +  +  IE+Y++    +   ++GD   ++  +    
Sbjct: 175 IVLGESELVGRLNEAQRESMTAFGYD-ECFIEKYIEKARHIEVQILGDKHKNIVHLYERD 233

Query: 197 SDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255
                   K        + PA+ +   + +++   A    +++        +FL D    
Sbjct: 234 CTLQRRHQK-----VVEIAPAQHLDASVRQDICNAAVKICKSVNYDNAGTVEFLLDTEKN 288

Query: 256 KVFWLEINV 264
             +++EIN 
Sbjct: 289 TFYFIEINP 297


>gi|318040501|ref|ZP_07972457.1| acetyl-CoA carboxylase biotin carboxylase subunit [Synechococcus
           sp. CB0101]
          Length = 450

 Score = 90.2 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 75/220 (34%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+     I     I +      +     DK  +K  + S GVP  P    
Sbjct: 78  AIHPGYGFLAENDKFAEICAAHGITFVGPSPESIRSMGDKSTAKATMQSVGVPTIPGSEG 137

Query: 114 NRFTMDSQHLI----SPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGDQ 165
               +D    +      P +IK   GG   G+ ++     +         ++ +      
Sbjct: 138 LLENVDQARTLAESMGYPVMIKATAGGGGRGMRLVPSPDQLDNLFKAAQGEAEAAFGNPG 197

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           L +E+++D    +   V+ D   +V  +            K             I  D+ 
Sbjct: 198 LYMEKFIDRPRHVEVQVLADRHGNVVHVGERDCSIQRRHQKLL----EEAPSVAINADLR 253

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K++   A  A + IG  G    +FL D  +   +++E+N 
Sbjct: 254 KQMGDAAVAAARTIGYEGAGTVEFLVD-RTGHFYFMEMNT 292


>gi|67537040|ref|XP_662294.1| hypothetical protein AN4690.2 [Aspergillus nidulans FGSC A4]
 gi|40741542|gb|EAA60732.1| hypothetical protein AN4690.2 [Aspergillus nidulans FGSC A4]
 gi|259482474|tpe|CBF76992.1| TPA: 3-methylcrotonyl-CoA carboxylase biotin-containig
           subunit3-methylcrotonyl-CoA carboxylase
           biotin-containing subunit (EC 6.4.1.4);(EC 6.4.1.4)
           [Source:UniProtKB/TrEMBL;Acc:Q6T5L7] [Aspergillus
           nidulans FGSC A4]
          Length = 712

 Score = 90.2 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 53/287 (18%), Positives = 96/287 (33%), Gaps = 44/287 (15%)

Query: 13  EVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNV--------------- 57
           E++L  G+  A      G +V+ +  D       A   P  AFN+               
Sbjct: 50  EIALRVGRTAAQH----GIRVTTLYTDPDSQAQHALSTP-YAFNLGSVSAYLDGDRIIEI 104

Query: 58  --------LHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP 106
                   +H  +G   E+           + +      A     DK +SK ++++ GVP
Sbjct: 105 AKAQGCQGIHPGYGFLSENSEFARKCTEAGLVFIGPPWKAIEDMGDKSQSKHIMTAAGVP 164

Query: 107 VCPSILVNRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
             P         +        I  P +IK +KGG   G+ + +  +     L  + S   
Sbjct: 165 CVPGYHGENQDPNFLEAEADKIKYPVLIKAIKGGGGKGMRIARSKEEFQAQLQSAKSEAM 224

Query: 163 ----GDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
                D +L+E+Y+     +   V  D   +   +            K            
Sbjct: 225 NSFGDDHVLVEKYITTPRHIEVQVFADKHGNCVALGERDCSIQRRHQKIL----EESPAP 280

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +P    K++   A  A  A+   G    +F+FD  + + F++E+N 
Sbjct: 281 HLPDATRKDIWAKARSAALAVRYEGAGTVEFIFDNDTGEFFFMEMNT 327


>gi|332971468|gb|EGK10421.1| acetyl-CoA carboxylase, biotin carboxylase [Psychrobacter sp.
           1501(2011)]
          Length = 449

 Score = 90.2 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 84/220 (38%), Gaps = 19/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---S 110
            +H  +G   E+      +E   I +         L  +K+ +   +   GVP  P    
Sbjct: 77  AIHPGYGFLAENAEFAENIEEAGITFVGPHPDHIRLMGNKVSAINAMKQAGVPTVPGSVG 136

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK----DQSIPLDLLQSSSWNHGDQL 166
            +      +    I  P +IK   GG   G+ ++ +    ++ +     ++  W   D +
Sbjct: 137 TVTLHNAEEQAKNIGFPLLIKAAAGGGGRGMRIVDRFDQLNEQVQAAKQEAELWFGDDSV 196

Query: 167 LIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIY 224
            +E+Y+ +   +   ++GD + +   +           L+          PA  IP DI 
Sbjct: 197 YMERYLQNPRHIEVQILGDGNGNAIHLY-----DRDCSLQRRHQKVLEEAPAPDIPDDIR 251

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + + +    A + IG RG    +FLF     + F++E+N 
Sbjct: 252 EPILQACVKACEDIGYRGAGTFEFLF--EDGEFFFIEMNT 289


>gi|255654105|ref|ZP_05399514.1| pyruvate carboxylase [Clostridium difficile QCD-23m63]
 gi|296449856|ref|ZP_06891623.1| pyruvate carboxylase [Clostridium difficile NAP08]
 gi|296877920|ref|ZP_06901940.1| pyruvate carboxylase [Clostridium difficile NAP07]
 gi|296261343|gb|EFH08171.1| pyruvate carboxylase [Clostridium difficile NAP08]
 gi|296431117|gb|EFH16944.1| pyruvate carboxylase [Clostridium difficile NAP07]
          Length = 1143

 Score = 90.2 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 42/243 (17%), Positives = 88/243 (36%), Gaps = 24/243 (9%)

Query: 35  QIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSM 91
            +D+D  +  +    K D     +H  +G   E+       E   I +         +  
Sbjct: 64  YLDMD-GIIDLAKRKKVD----AIHPGYGFLAENAEFARKCEENGITFIGPSSKVMNMMG 118

Query: 92  DKMRSKQVVSSCGVPVCPSILV----NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147
           DK+ SK++     V   P +           +  + I  P +IK   GG   G+ ++  +
Sbjct: 119 DKINSKKIAKEVNVQTIPGVEKAIRSTEEAKEVANKIGYPVMIKASNGGGGRGMRIVHHE 178

Query: 148 QSIPLDLLQSSSWNHG----DQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSY 202
           + + L+   + S +      D + IE+Y+ D   +   ++GD   ++  +          
Sbjct: 179 EDLELEYETACSESRKAFGEDIIFIEKYIADPKHIEVQILGDNYGNIVHLYE-----RDC 233

Query: 203 ELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
            ++          PA  +   + KE+   A    + +G       +FL D      +++E
Sbjct: 234 SVQRRHQKIIEYAPAFSLDDKVRKEICEDAVKLSKHVGYSNAGTLEFLVDANGGH-YFIE 292

Query: 262 INV 264
           +N 
Sbjct: 293 MNT 295


>gi|193873038|gb|ACF23209.1| D-alanine-D-alanine ligase [Streptococcus mitis]
          Length = 96

 Score = 90.2 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 31/96 (32%), Positives = 50/96 (52%), Gaps = 2/96 (2%)

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNST 212
               ++ +  ++LIEQ V+  E+  G++G+  +  T     V    FY Y+ KY     T
Sbjct: 1   ALELAFRYDSRVLIEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKIT 60

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
             +PAKI  D+   +++ A  A +AIG  G+SR DF
Sbjct: 61  MDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDF 96


>gi|193873002|gb|ACF23191.1| D-alanine-D-alanine ligase [Streptococcus mitis]
          Length = 96

 Score = 90.2 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 30/96 (31%), Positives = 50/96 (52%), Gaps = 2/96 (2%)

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNST 212
               ++ +  ++L+EQ V+  E+  G++G+  +  T     V    FY Y+ KY     T
Sbjct: 1   ALKLAFRYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKIT 60

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
             +PAKI  D+   +++ A  A +AIG  G+SR DF
Sbjct: 61  MDIPAKISDDVIAVMRQNAETAFRAIGGLGLSRCDF 96


>gi|54027012|ref|YP_121254.1| putative acetyl-CoA carboxylase subunit alpha [Nocardia farcinica
           IFM 10152]
 gi|54018520|dbj|BAD59890.1| putative acetyl-CoA carboxylase alpha subunit [Nocardia farcinica
           IFM 10152]
          Length = 694

 Score = 90.2 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 44/244 (18%), Positives = 89/244 (36%), Gaps = 22/244 (9%)

Query: 34  SQIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALS 90
           S +D+D+ V   +           +H  +G   E+      L+   I +      A  + 
Sbjct: 66  SYLDIDKVVDAAVRTGAQ-----AVHPGYGFLSENAAFATALDKAGIVFLGPPARAIEIM 120

Query: 91  MDKMRSKQVVSSCGVPVCPSILVNRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKK 146
            DK+ +K  VS+ GVPV P I     + D    +   +  P ++KP  GG   G+  +  
Sbjct: 121 GDKIAAKNTVSAFGVPVVPGIAEPGLSDDDLIAAAAEVGYPVLVKPSAGGGGKGMRRVDD 180

Query: 147 DQSIPLDLL----QSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYS 201
              +P  L+    ++ +    D L +E++V     +   V+ D   +V  +   +     
Sbjct: 181 PADLPAALVSARREAGAAFGDDTLFLERFVTNPRHIEVQVLADRHGNVLHLGERECSLQR 240

Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP-LSRKVFWL 260
              K             +  +    +   A    +++   G    +F+       + F++
Sbjct: 241 RHQK----VIEEAPSPLLDAETRARIGAAACDTARSVDYVGAGTVEFIVSAGRPDEFFFM 296

Query: 261 EINV 264
           E+N 
Sbjct: 297 EMNT 300


>gi|193873010|gb|ACF23195.1| D-alanine-D-alanine ligase [Streptococcus infantis]
          Length = 96

 Score = 90.2 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 31/96 (32%), Positives = 50/96 (52%), Gaps = 2/96 (2%)

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNST 212
               ++ +  ++L+EQ V+  E+  G++G+  +  T     V    FY YE KY     T
Sbjct: 1   ALELAFKYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDYEAKYIDNKIT 60

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
             +PAKI  D+   +++ A  A +AIG  G+SR DF
Sbjct: 61  MDIPAKISDDVVAVMRKNAETAFRAIGGLGLSRCDF 96


>gi|193872980|gb|ACF23180.1| D-alanine-D-alanine ligase [Streptococcus mitis]
 gi|193873008|gb|ACF23194.1| D-alanine-D-alanine ligase [Streptococcus mitis]
          Length = 96

 Score = 90.2 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 30/96 (31%), Positives = 50/96 (52%), Gaps = 2/96 (2%)

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNST 212
               ++ +  ++L+EQ V+  E+  G++G+  +  T     V    FY Y+ KY     T
Sbjct: 1   ALKLAFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKIT 60

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
             +PAKI  D+   +++ A  A +AIG  G+SR DF
Sbjct: 61  MDIPAKISDDVIAVMRQNAETAFRAIGGLGLSRCDF 96


>gi|207722336|ref|YP_002252772.1| hypothetical protein RSMK04933 [Ralstonia solanacearum MolK2]
 gi|206587513|emb|CAQ18095.1| hypothetical protein RSMK04933 [Ralstonia solanacearum MolK2]
          Length = 390

 Score = 90.2 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 71/336 (21%), Positives = 114/336 (33%), Gaps = 68/336 (20%)

Query: 18  SGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQA------I 71
           SG      L DAGF +            L     D  F        EDG+ QA      +
Sbjct: 57  SGADIGHCLRDAGFDLLTPHAAPDPARAL-----DWVFP-----DTEDGIAQAIGRGATM 106

Query: 72  LELLEIPYTHSGILASA--------------LSMDKMRSKQVVSSCGVPVCPSILVNRFT 117
           L    + +    I   A               + DK  +   +   G+PV  S L+ R  
Sbjct: 107 LWANTVLFRGHPIECRAGAAWIVGQAPALQQDADDKFATNARLRRHGLPVAASSLIGREA 166

Query: 118 MDS-------------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL-QSSSWNHG 163
             S             +  ++ P VIKP++G  S G+ ++    S+         S   G
Sbjct: 167 SGSLPPLEALREDDLHRAGLAFPLVIKPVRGRGSEGVTLVHDLPSMQRAAAGLLDSGAFG 226

Query: 164 DQLLIEQYVDGIELTCGVM-GDASLDVTE--------IAVPKSDFYSYELKYSSLNSTHV 214
           D L+ E ++ G ELT  V+     L              V + +       Y+   +   
Sbjct: 227 DALIAETFLAGEELTVTVLPRQDDLPAAFSSDTASALPPVRRFNHVDGVAPYNGAVAVTR 286

Query: 215 LPAKIPLD-----IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
               +P++       + + R   LA+  +G R   R D   D         ++N++P MT
Sbjct: 287 NSVALPVEAAMAPEARALIRACLLAYDVVGARAPIRIDCRADAH-GAYQLFDLNMKPNMT 345

Query: 270 ---------PVSIFPEMAAYAGYSFRELLLWMVEDA 296
                      S+    A   G+ +RELL+ M+  A
Sbjct: 346 GAGRPGREDQDSLSALAARAVGWDYRELLVRMMGAA 381


>gi|115433702|ref|XP_001216988.1| hypothetical protein ATEG_08367 [Aspergillus terreus NIH2624]
 gi|114189840|gb|EAU31540.1| hypothetical protein ATEG_08367 [Aspergillus terreus NIH2624]
          Length = 650

 Score = 90.2 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 46/219 (21%), Positives = 94/219 (42%), Gaps = 20/219 (9%)

Query: 58  LHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
           +H  +G   E     + ++   I     G +  A + DK+++KQ+   C VPV P+  + 
Sbjct: 81  IHPGYGFLSESAEFASRMQEAGITVIGPGPVTLARTGDKLQAKQLAMECNVPVLPA--ME 138

Query: 115 RFTMDSQHL------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168
           R T D+  +      +  P +IK + GG   GI ++++D+ +   +  +   +    + +
Sbjct: 139 RPTADATEIRAFARRVGYPVMIKAVDGGGGRGIRLVRRDEELENAVRGAMGESPSQTVFV 198

Query: 169 EQY-VDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYK 225
           E+  VDG   +   V+GD +       V         ++        + P+ +    + +
Sbjct: 199 EKAAVDGYHHIEVQVVGDGT------DVRHLWERDCSVQRRFQKVIEIAPSLMQNRPLIQ 252

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +V   A    +AI  R +   +FL     ++ ++LEIN 
Sbjct: 253 QVVDAALRMARAINYRSLGTVEFLVHEQQKEFYFLEINP 291


>gi|116669947|ref|YP_830880.1| carbamoyl-phosphate synthase L chain, ATP-binding [Arthrobacter sp.
           FB24]
 gi|116610056|gb|ABK02780.1| Carbamoyl-phosphate synthase L chain, ATP-binding protein
           [Arthrobacter sp. FB24]
          Length = 752

 Score = 90.2 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 89/228 (39%), Gaps = 26/228 (11%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      LE   I +   G+ +  +  DK+RSK  V+  GVPV P I  
Sbjct: 101 AVHPGYGFLSENVDFARELEKAGITFIGPGVESLNVMGDKIRSKNHVAGYGVPVVPGIAE 160

Query: 114 NRFT----MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL-----QSSSWNHGD 164
              T    +++   +  P +IKP  GG   G+ ++++   +   L       +S++   D
Sbjct: 161 PGMTDAQLIEAAAGVGFPLLIKPSAGGGGKGMHIVERPDELEATLATARRVAASAFG-DD 219

Query: 165 QLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI---- 219
            L +E+ V     +   V+ D   +V  +   +        K          P+ +    
Sbjct: 220 TLFLERLVTTPRHIEVQVLADNYGNVVHLGERECSLQRRHQK-----VIEEAPSPLLESL 274

Query: 220 --PLDIYKEVQRLAFLAHQAIGCRGISRSDFLF-DPLSRKVFWLEINV 264
                +   +   A  A +++   G    +FL  D    + F++E+N 
Sbjct: 275 PDGEAVRARIGEAACNAARSVRYSGAGTVEFLVSDNAPDEFFFMEMNT 322


>gi|300789737|ref|YP_003770028.1| acetyl/propionyl-CoA carboxylase, biotin carboxylase subunit fused
           with biotin carboxyl carrier subunit [Amycolatopsis
           mediterranei U32]
 gi|299799251|gb|ADJ49626.1| acetyl/propionyl-CoA carboxylase, biotin carboxylase subunit fused
           with biotin carboxyl carrier subunit [Amycolatopsis
           mediterranei U32]
          Length = 661

 Score = 90.2 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 42/222 (18%), Positives = 85/222 (38%), Gaps = 19/222 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+       E   + +    + A     DK+R+K  VS  GVPV P    
Sbjct: 77  AVHPGYGFLAENAEFARACEAAGLVFIGPPVAAIDAMGDKIRAKATVSKAGVPVVPGASD 136

Query: 112 --LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
             + +     +   +  P ++KP  GG   G+ ++   + +   +  +          D 
Sbjct: 137 VDIPDGDFASAASKVGYPLLLKPSAGGGGKGMRLVHAPEELDAAIESARREAKGSFGDDT 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           LL+E++V     +   VM D   +V  +   +        K          P+ +  D+ 
Sbjct: 197 LLMERFVTTPRHIEIQVMADTHGNVIHLGERECSLQRRHQK-----IIEEAPSVLLDDVT 251

Query: 225 -KEVQRLAFLAHQAIGCRGISRSDFLFDPLS-RKVFWLEINV 264
            +++   A  A +++G  G    +F+       + F++E+N 
Sbjct: 252 REKMGSAAVEAARSVGYVGAGTVEFIMSAHDPDEFFFMEMNT 293


>gi|83414111|dbj|BAE53846.1| D-alanine:D-alanine ligase [Streptococcus oralis]
 gi|83414117|dbj|BAE53849.1| D-alanine:D-alanine ligase [Streptococcus oralis]
          Length = 96

 Score = 90.2 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 30/96 (31%), Positives = 50/96 (52%), Gaps = 2/96 (2%)

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNST 212
               ++ +  ++L+EQ V+  E+  G++G+  +  T     V    FY Y+ KY     T
Sbjct: 1   ALELAFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKIT 60

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
             +PAKI  D+   +++ A  A +AIG  G+SR DF
Sbjct: 61  MAIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDF 96


>gi|168334931|ref|ZP_02693050.1| biotin carboxylase [Epulopiscium sp. 'N.t. morphotype B']
          Length = 451

 Score = 90.2 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 80/221 (36%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  FG   E+     I E   I +            DK  +++++   GVPV P    
Sbjct: 77  AIHPGFGFLSENAKFARICEECNITFIGPNYKMIENMGDKASARKLMIEAGVPVVPGSKG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS-----SWNHGD 164
            +   +  +     I  P ++K   GG   G+ ++  ++ +    L +S     ++    
Sbjct: 137 VVSSTQQALVVAKEIGYPVMLKASAGGGGRGMRIVFVEKDLESAFLSASTEALGAFG-DG 195

Query: 165 QLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            + +E+YV +   +   ++GD   ++  +            K             I  ++
Sbjct: 196 SMYMERYVQNPRHIEFQILGDNYGNIVHLGERDCSMQRRHQK----VMEEAPSPFISKEM 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              +   A  A +A+  R     +F+ D      +++E+N 
Sbjct: 252 RVTMGDAAIKAAKAVNYRNAGTVEFIVDK-DGNFYFIEMNT 291


>gi|62089054|dbj|BAD92974.1| methylcrotonoyl-Coenzyme A carboxylase 1 (alpha) variant [Homo
           sapiens]
          Length = 741

 Score = 90.2 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 82/221 (37%), Gaps = 19/221 (8%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H   G   E+     + +   I +      A      K  SK ++++ GVPV      
Sbjct: 140 AIHPGCGFLSENMEFAELCKQEGIIFIGPPPSAIRDMGIKSTSKSIMAAAGVPVVEGYHG 199

Query: 113 ---VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
               ++   +    I  P +IK ++GG   G+ +++ +Q     L  +          D 
Sbjct: 200 EDQSDQCLKEHARRIGYPVMIKAVRGGGGKGMRIVRSEQEFQEQLESAWREAKKSFNDDA 259

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           +LIE++VD    +   V GD   +   +           ++          PA  I  ++
Sbjct: 260 MLIEKFVDTPRHVEVQVFGDHHGNAVYL-----FERDCSVQRRHQKIIEEAPAPGIKSEV 314

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            K++   A  A +A+   G    +F+ D       ++E+N 
Sbjct: 315 RKKLGEAAVRAAKAVNYVGAGTVEFIMDSKHN-FCFMEMNT 354


>gi|189499301|ref|YP_001958771.1| acetyl-CoA carboxylase, biotin carboxylase [Chlorobium
           phaeobacteroides BS1]
 gi|189494742|gb|ACE03290.1| acetyl-CoA carboxylase, biotin carboxylase [Chlorobium
           phaeobacteroides BS1]
          Length = 447

 Score = 90.2 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 76/221 (34%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     +     I +            DK  +++ + + GVPV P    
Sbjct: 77  AIHPGYGFLAENADFAEVCTSSGIKFIGPDAEMIRKMGDKNTARKTMIAAGVPVVPGSSG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS-----SSWNHGD 164
            I      + +   I  P +IKP  GG   G+ V+     +   +  +      ++ +  
Sbjct: 137 LISDGNEALKTAEKIGYPIIIKPTAGGGGKGMRVVNDGGELGKAIATAQNEAQQAFGNSG 196

Query: 165 QLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            + IE++++    +   V+ D   +   +            K             I  + 
Sbjct: 197 -VYIEKFIECPRHVEIQVLSDQHGNTIHLGERDCTIQRRHQK----LIEETPSPAIHEEQ 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +++   A  A  AI   G    +FL D      +++E+N 
Sbjct: 252 RRKMGEAAVAAAAAINYEGAGTVEFLLDKHGN-FYFMEMNT 291


>gi|193873052|gb|ACF23216.1| D-alanine-D-alanine ligase [Streptococcus infantis]
 gi|193873054|gb|ACF23217.1| D-alanine-D-alanine ligase [Streptococcus infantis]
          Length = 96

 Score = 90.2 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 30/96 (31%), Positives = 50/96 (52%), Gaps = 2/96 (2%)

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNST 212
               ++ +  ++L+EQ V+  E+  G++G+  +  T     V    FY Y+ KY     T
Sbjct: 1   ALDLAFKYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKIT 60

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
             +PAKI  D+   +++ A  A +AIG  G+SR DF
Sbjct: 61  MDIPAKISDDVIALMRKNAETAFRAIGGLGLSRCDF 96


>gi|218246268|ref|YP_002371639.1| acetyl-CoA carboxylase biotin carboxylase subunit [Cyanothece sp.
           PCC 8801]
 gi|218166746|gb|ACK65483.1| acetyl-CoA carboxylase, biotin carboxylase [Cyanothece sp. PCC
           8801]
          Length = 449

 Score = 90.2 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 78/220 (35%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     I    +I +      A     DK  +K+ +   GVP  P    
Sbjct: 78  AIHPGYGFLAENAKFSEICADHQITFIGPSPEAIRAMGDKSTAKKTMQKAGVPTVPGSWG 137

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
            I   +   +    I  P +IK   GG   G+ ++++D            ++ +      
Sbjct: 138 VIETEQEAQEIARDIGYPMMIKATAGGGGRGMRLVREDSEFSRAFQSAQGEAEAAFGNKG 197

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E++++    +   ++ D+  +V  +            K             +  ++ 
Sbjct: 198 VYLEKFIERPRHIEFQILADSQGNVVHLGERDCSIQRRHQKLL----EEAPSPFLTPELR 253

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            ++   A  A ++I   G    +FL D      +++E+N 
Sbjct: 254 LKMGEAAVKAAKSIDYVGAGTVEFLVDNQGN-FYFMEMNT 292


>gi|83415052|dbj|BAE53785.1| D-alanine:D-alanine ligase [Streptococcus gordonii]
          Length = 96

 Score = 90.2 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 27/95 (28%), Positives = 49/95 (51%), Gaps = 2/95 (2%)

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTH 213
              ++ +  ++L+EQ V   E+  G++G+  +  +     V    FY Y+ KY     T 
Sbjct: 2   LDLAFKYDSRVLVEQGVTAREIEVGLLGNTDVKSSLPGEVVKDVAFYDYQAKYIDNKITM 61

Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
            +PA++P  +   +++ A  A +AIG  G+SR DF
Sbjct: 62  AIPAQLPEGVVNTMRQNAETAFRAIGGLGLSRCDF 96


>gi|325958521|ref|YP_004289987.1| acetyl-CoA carboxylase, biotin carboxylase [Methanobacterium sp.
           AL-21]
 gi|325329953|gb|ADZ09015.1| acetyl-CoA carboxylase, biotin carboxylase [Methanobacterium sp.
           AL-21]
          Length = 495

 Score = 90.2 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 39/244 (15%), Positives = 94/244 (38%), Gaps = 25/244 (10%)

Query: 34  SQIDVDRSVGLVLA----HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
           S +D+D+ + + +      + P   F   +   GE+       E   I            
Sbjct: 59  SYLDIDKIIDVAIKSGAEAIHPGYGFLAENSLLGEE------CEKHGIKLVGPSGRVIEE 112

Query: 90  SMDKMRSKQVVSSCGVPVCP--SILVNRFTMDS--QHLISPPYVIKPLKGGSSLGIIVIK 145
              K+ SK+++   GVPV P  S  ++     +    ++  P +IK   GG  +G+  + 
Sbjct: 113 MGSKITSKKLMKRAGVPVVPGGSKAIDNVEEAAKMAEIVGYPVIIKASAGGGGIGMRTVF 172

Query: 146 KDQSIPLDLLQSSSWNH----GDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFY 200
           ++  +   +  + S          + +E+Y++    +   ++ D   +   +A  +    
Sbjct: 173 EEDELVRAIESTKSVAELNFGDSTVFVEKYIEEPRHIEFQILADEHGNTIHVADRECSIQ 232

Query: 201 SYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260
               K    + + ++      ++  E+   A  A ++IG       +F++   + + ++L
Sbjct: 233 RRHQKLIEESPSPIM----TDELRAEMGEAAIKAAKSIGYTNAGTVEFIY--SNGEFYFL 286

Query: 261 EINV 264
           E+N 
Sbjct: 287 EMNT 290


>gi|321311471|ref|YP_004203758.1| acetyl-CoA carboxylase biotin carboxylase subunit [Bacillus
           subtilis BSn5]
 gi|320017745|gb|ADV92731.1| acetyl-CoA carboxylase biotin carboxylase subunit [Bacillus
           subtilis BSn5]
          Length = 444

 Score = 90.2 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 30/221 (13%), Positives = 82/221 (37%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       +   I +             K+ +++ + + GVPV P +  
Sbjct: 77  AIHPGYGLLSENSRFAERCKQENIVFIGPSPDIIEKMGSKIEARKAMEAAGVPVVPGVSE 136

Query: 114 NRFTMDSQHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
           +   +++       I  P ++K   GG  +G+  ++ ++++         +++ +     
Sbjct: 137 SLGDIEAACRTASQIGYPVMLKASAGGGGIGMQRVENEEALKKAYEGNKKRAADFFGDGS 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           + IE+ ++    +   ++ D                   ++          P+  +  ++
Sbjct: 197 MYIEKVIEHARHIEVQLLADQHGHTV-----HLFERDCSVQRRHQKVIEEAPSPFVDDEL 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             ++ + A  A +AIG       +F+ D      ++LE+N 
Sbjct: 252 RMKIGQTAVKAAKAIGYTNAGTIEFIVDQKQN-FYFLEMNT 291


>gi|299116161|emb|CBN76068.1| carboxylase [Ectocarpus siliculosus]
          Length = 745

 Score = 90.2 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 83/221 (37%), Gaps = 18/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H  +G   E+           + +      A      K  +K ++S  GVPVCP    
Sbjct: 108 AVHPGYGFLSENATFAKQCASAGVTFIGPPEKAIDQMGSKSVAKAIMSDAGVPVCPGYHG 167

Query: 113 ---VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
               + F  +    +  P +IK + GG   G+ +++  +     L     ++++    D+
Sbjct: 168 EDQSDAFLEEEAKRVGFPVMIKAVMGGGGKGMRLVQTPEGFQSALEACRREAAAGFADDR 227

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           +L+E+YV +   +   V  D   +               ++          PA  I    
Sbjct: 228 MLLERYVNEPRHVEVQVFADTLGNAV-----HLFERDCSVQRRHQKVLEEAPAPGISDAT 282

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             E+   A  A +A+G  G    +FL D  +++ F+ E+N 
Sbjct: 283 RAELGEAAVRAAKAVGYVGAGTVEFLMDTRTQEFFFCEMNT 323


>gi|152991385|ref|YP_001357107.1| biotin carboxylase [Nitratiruptor sp. SB155-2]
 gi|151423246|dbj|BAF70750.1| acetyl-CoA carboxylase, biotin carboxylase [Nitratiruptor sp.
           SB155-2]
          Length = 447

 Score = 90.2 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 42/215 (19%), Positives = 79/215 (36%), Gaps = 14/215 (6%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVN 114
           +G   E+     I  L  I +    I    L  DK ++K+V+ S GVPV P     I   
Sbjct: 84  YGFLSENQQFVEICNLHGIKFIGPSIEVMQLMSDKSKAKEVMKSAGVPVVPGSEGAIKNV 143

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQLLIEQ 170
                    I  P ++K   GG   G+ V++ +  I    L + S          + +E+
Sbjct: 144 EEAKKIAKEIGYPVILKAASGGGGKGMRVVEDESYIENAFLAAESEAISAFGDGTIYMEK 203

Query: 171 YV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           ++     +   ++GD+  +V  +            K             +     +++  
Sbjct: 204 FIKKPRHIEVQLLGDSHGNVVHLGERDCSLQRRHQKML----EESPAIFLDEKTRQKLLD 259

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +A  A +AI        +FL D   +  +++E+N 
Sbjct: 260 VAVKAAKAIRYENAGTIEFLVDN-DQNFYFMEMNT 293


>gi|193872958|gb|ACF23169.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|193872960|gb|ACF23170.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
          Length = 96

 Score = 90.2 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 30/96 (31%), Positives = 50/96 (52%), Gaps = 2/96 (2%)

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNST 212
               ++ +  ++L+EQ V+  E+  G++G+  +  T     V    FY Y+ KY     T
Sbjct: 1   ALKLAFRYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKIT 60

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
             +PAKI  D+   +++ A  A +AIG  G+SR DF
Sbjct: 61  MDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDF 96


>gi|193872862|gb|ACF23121.1| D-alanine-D-alanine ligase [Streptococcus mitis]
          Length = 96

 Score = 90.2 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 31/96 (32%), Positives = 51/96 (53%), Gaps = 2/96 (2%)

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNST 212
               ++ +  ++L+EQ V+  E+  G++G+  +  T     V   DFY Y+ KY     T
Sbjct: 1   ALKLAFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVDFYDYDAKYIDNKIT 60

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
             +PAKI  D+   +++ A  A +AIG  G+SR DF
Sbjct: 61  MDIPAKISDDVVVVMRQNAETAFRAIGGLGLSRCDF 96


>gi|83414033|dbj|BAE53807.1| D-alanine:D-alanine ligase [Streptococcus mitis]
 gi|83415042|dbj|BAE53780.1| D-alanine:D-alanine ligase [Streptococcus mitis]
 gi|83415070|dbj|BAE53794.1| D-alanine:D-alanine ligase [Streptococcus mitis]
 gi|83415072|dbj|BAE53795.1| D-alanine:D-alanine ligase [Streptococcus mitis]
 gi|83415080|dbj|BAE53799.1| D-alanine:D-alanine ligase [Streptococcus mitis]
 gi|83415082|dbj|BAE53800.1| D-alanine:D-alanine ligase [Streptococcus mitis]
 gi|193872854|gb|ACF23117.1| D-alanine-D-alanine ligase [Streptococcus mitis]
 gi|193872866|gb|ACF23123.1| D-alanine-D-alanine ligase [Streptococcus mitis]
 gi|193872872|gb|ACF23126.1| D-alanine-D-alanine ligase [Streptococcus mitis]
 gi|193872874|gb|ACF23127.1| D-alanine-D-alanine ligase [Streptococcus infantis]
 gi|193872880|gb|ACF23130.1| D-alanine-D-alanine ligase [Streptococcus mitis]
 gi|193872896|gb|ACF23138.1| D-alanine-D-alanine ligase [Streptococcus mitis]
 gi|193872898|gb|ACF23139.1| D-alanine-D-alanine ligase [Streptococcus mitis]
 gi|193872900|gb|ACF23140.1| D-alanine-D-alanine ligase [Streptococcus mitis]
 gi|193872976|gb|ACF23178.1| D-alanine-D-alanine ligase [Streptococcus mitis]
 gi|193872990|gb|ACF23185.1| D-alanine-D-alanine ligase [Streptococcus mitis]
 gi|193872992|gb|ACF23186.1| D-alanine-D-alanine ligase [Streptococcus mitis]
 gi|193872996|gb|ACF23188.1| D-alanine-D-alanine ligase [Streptococcus mitis]
 gi|193872998|gb|ACF23189.1| D-alanine-D-alanine ligase [Streptococcus mitis]
 gi|193873000|gb|ACF23190.1| D-alanine-D-alanine ligase [Streptococcus mitis]
 gi|193873006|gb|ACF23193.1| D-alanine-D-alanine ligase [Streptococcus mitis]
 gi|193873012|gb|ACF23196.1| D-alanine-D-alanine ligase [Streptococcus mitis]
 gi|193873022|gb|ACF23201.1| D-alanine-D-alanine ligase [Streptococcus mitis]
 gi|193873026|gb|ACF23203.1| D-alanine-D-alanine ligase [Streptococcus mitis]
 gi|193873072|gb|ACF23226.1| D-alanine-D-alanine ligase [Streptococcus mitis]
 gi|193873074|gb|ACF23227.1| D-alanine-D-alanine ligase [Streptococcus mitis]
 gi|193873078|gb|ACF23229.1| D-alanine-D-alanine ligase [Streptococcus mitis]
          Length = 96

 Score = 90.2 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 30/96 (31%), Positives = 50/96 (52%), Gaps = 2/96 (2%)

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNST 212
               ++ +  ++L+EQ V+  E+  G++G+  +  T     V    FY Y+ KY     T
Sbjct: 1   ALKLAFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKIT 60

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
             +PAKI  D+   +++ A  A +AIG  G+SR DF
Sbjct: 61  MDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDF 96


>gi|226365562|ref|YP_002783345.1| acyl-CoA carboxylase alpha chain [Rhodococcus opacus B4]
 gi|226244052|dbj|BAH54400.1| acyl-CoA carboxylase alpha chain [Rhodococcus opacus B4]
          Length = 669

 Score = 90.2 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 80/221 (36%), Gaps = 19/221 (8%)

Query: 58  LHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
           +H  +G   E+           I +      A  +  DK+ +K  V+   VPV P I   
Sbjct: 80  IHPGYGFLSENSKFAGACADAGIAFLGPSAHAIEVMGDKITAKNAVAKFDVPVVPGIARP 139

Query: 115 RFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGDQ 165
             + D    +   I  P ++KP  GG   G+ ++++  ++   L       +S++   D 
Sbjct: 140 GLSDDELIAAAGDIGYPVLVKPSAGGGGKGMRLVEEPGALAEALRSARREAASAFG-DDT 198

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           L +E++V     +   ++ D   +V  +   +        K             +     
Sbjct: 199 LFLERFVLRPRHIEVQILADGHGNVVHLGERECSLQRRHQK----VIEEAPSPLLDEATR 254

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLS-RKVFWLEINV 264
             +   A    +++   G    +F+    +  + F++E+N 
Sbjct: 255 ARIGEAACNTARSVDYSGAGTVEFIVSADTPDEFFFMEMNT 295


>gi|84489713|ref|YP_447945.1| pyruvate carboxylase subunit A [Methanosphaera stadtmanae DSM 3091]
 gi|84373032|gb|ABC57302.1| PycA [Methanosphaera stadtmanae DSM 3091]
          Length = 496

 Score = 90.2 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 42/246 (17%), Positives = 92/246 (37%), Gaps = 29/246 (11%)

Query: 34  SQIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALS 90
           S +D+D+ + + L     D   + +H  +G   E+ ++    +   I        A    
Sbjct: 59  SYLDIDKIIDIAL-----DTGADAIHPGYGFLSENPVLGNKCDENNITLIGPRENAIQAM 113

Query: 91  MDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            DK+ SKQ++   GVP  P     I            I  P +IK   GG  +G+ V+ +
Sbjct: 114 GDKITSKQLMEKIGVPTVPGDKEGITDIEEAKKRAKEIGFPVIIKSSAGGGGIGMRVVYE 173

Query: 147 DQSIPLDLL----QSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYS 201
           +  +   +      + +      + IE+Y++    +   V+ D   +   +         
Sbjct: 174 EDELARAIESTQNLAQATFGDGTVYIEKYIEKPRHIEFQVLADNHGNTIHV-------CD 226

Query: 202 YELKYSSLNSTHVLPAKIP---LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
            E      +   +  A  P    ++ + +   A  A +++        +F++   + + +
Sbjct: 227 RECSIQRRHQKLIEEAPSPIMTEELRQRMGESAIKAAKSVDYNSAGTVEFMY--SNGEYY 284

Query: 259 WLEINV 264
           +LE+N 
Sbjct: 285 FLEMNT 290


>gi|310797646|gb|EFQ32539.1| carbamoyl-phosphate synthase subunit L [Glomerella graminicola
           M1.001]
          Length = 721

 Score = 90.2 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 39/222 (17%), Positives = 80/222 (36%), Gaps = 18/222 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            LH  +G   E+       E   I +      A A   DK RSK+++++ GVP  P    
Sbjct: 107 ALHPGYGFLSENSKFAERCEKEGIVFVGPPAQAMADMGDKARSKEIMTAAGVPCVPGYHG 166

Query: 114 NRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGD 164
           +    +        I  P ++K +KGG   G+ ++  +      L  + +     +  G 
Sbjct: 167 SEQGEEQLLQHAKNIKFPVLLKSVKGGGGKGMRIVMMEDEFAAQLRSARAEARASFGEGG 226

Query: 165 QLL-IEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD 222
           +++ +E+Y+     +   V  D   +   +            K             +  +
Sbjct: 227 EVMLVEKYIVRPRHVEVQVFADKLGNCVALGERDCSIQRRHQKIL----EESPAPDLDDE 282

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              ++   A  A  A+   G    +F+ D  +   +++E+N 
Sbjct: 283 TRFDLWEKARKAALAVNYVGAGTVEFILDKDTGDFYFMEMNT 324


>gi|306921325|dbj|BAJ17742.1| methylcrotonoyl-Coenzyme A carboxylase 1 [synthetic construct]
          Length = 725

 Score = 90.2 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 82/221 (37%), Gaps = 19/221 (8%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H   G   E+     + +   I +      A      K  SK ++++ GVPV      
Sbjct: 124 AIHPGCGFLSENMEFAELCKQEGIIFIGPPPSAIRDMGIKSTSKSIMAAAGVPVVEGYHG 183

Query: 113 ---VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
               ++   +    I  P +IK ++GG   G+ +++ +Q     L  +          D 
Sbjct: 184 EDQSDQCLKEHARRIGYPVMIKAVRGGGGKGMRIVRSEQEFQEQLESAWREAKKSFNDDA 243

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           +LIE++VD    +   V GD   +   +           ++          PA  I  ++
Sbjct: 244 MLIEKFVDTPRHVEVQVFGDHHGNAVYL-----FERDCSVQRRHQKIIEEAPAPGIKSEV 298

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            K++   A  A +A+   G    +F+ D       ++E+N 
Sbjct: 299 RKKLGEAAVRAAKAVNYVGAGTVEFIMDSKHN-FCFMEMNT 338


>gi|291619625|ref|YP_003522367.1| DUR1,2 [Pantoea ananatis LMG 20103]
 gi|291154655|gb|ADD79239.1| DUR1,2 [Pantoea ananatis LMG 20103]
          Length = 1201

 Score = 90.2 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 39/255 (15%), Positives = 87/255 (34%), Gaps = 30/255 (11%)

Query: 58  LHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
           +H  +G   E+       E   + +             K  ++ +  + GVP+     + 
Sbjct: 78  IHPGYGFLSENAGFAEACEAAGLIFVGPTPQQLRTFGLKHTARALAKAEGVPLLEGSELL 137

Query: 115 RFTMDS---QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQLL 167
               ++      +  P ++K   GG  +G+ V +    +                   + 
Sbjct: 138 ADAAEACRVAETVGYPVMLKSTAGGGGIGMRVCRDSHELTEAFDTVQRLGQNNFSDAGVF 197

Query: 168 IEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE 226
           +E Y++    L   + GD   DV  + V          K             +P  + + 
Sbjct: 198 LENYIERARHLEVQIFGDGQGDVIALGVRDCSVQRRNQK----VIEETPAPNLPEGMAQA 253

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           +   A    +A+  R     +F++D L+++ ++LE+N             +    G + +
Sbjct: 254 LCEAAVALGKAVNYRSAGTVEFVYDSLNQQFYFLEVNT-----------RLQVEHGVTEQ 302

Query: 287 ----ELLLWMVEDAS 297
               +L+ WM+E A+
Sbjct: 303 VWGVDLVKWMIELAA 317


>gi|158335279|ref|YP_001516451.1| acetyl-CoA carboxylase biotin carboxylase subunit [Acaryochloris
           marina MBIC11017]
 gi|158305520|gb|ABW27137.1| acetyl-CoA carboxylase, biotin carboxylase [Acaryochloris marina
           MBIC11017]
          Length = 449

 Score = 90.2 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 83/220 (37%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     I    +I +      A     DK  +K+ +   GVP  P    
Sbjct: 78  AIHPGYGFLAENARFAEICADHKIHFIGPTPEAMRAMGDKSTAKETMQKAGVPTVPGSDG 137

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGDQ 165
            +            +  P ++K   GG   G+ ++++ +++         ++ +      
Sbjct: 138 LVPDEATAKKIADDMGYPVMVKATAGGGGRGMRLVREPENLGKLYLAAQGEAEAAFGNPG 197

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE++++    +   +  D+  +V  +            K    +     PA +  ++ 
Sbjct: 198 VYIEKFIENPRHIEFQIFADSYGNVVHLGERDCSIQRRHQKLLEESP---SPA-LSPELR 253

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +++   A  A Q+IG  G    +FL    + + +++E+N 
Sbjct: 254 EKMGSAAVRAAQSIGYVGAGTVEFLLS-STGEFYFMEMNT 292


>gi|56475599|ref|YP_157188.1| biotin carboxylase subunit of acetyl-CoA carboxylase-like enzyme
           [Aromatoleum aromaticum EbN1]
 gi|56311642|emb|CAI06287.1| biotin carboxylase subunit of acetyl-CoA carboxylase-like enzyme
           [Aromatoleum aromaticum EbN1]
          Length = 460

 Score = 90.2 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 45/242 (18%), Positives = 89/242 (36%), Gaps = 22/242 (9%)

Query: 33  VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASAL 89
            S + VD  VG  LA  K D     +H  +G   E+  +      + I +          
Sbjct: 59  ASYLSVDAVVGAALAA-KVD----AIHPGYGFLSENQRLAQACSAVGIIFIGPTEAQLDA 113

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147
             DK++++    + G+PV P   V+              P +IK + GG   G+ ++ + 
Sbjct: 114 VGDKLKARSHALAAGLPVVPGGEVDSVEDARALAEKTGWPILIKAVSGGGGRGMKLVHEP 173

Query: 148 QSI----PLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSY 202
             +     L + ++ +     ++ +E+YV  G  +   V+GD         V        
Sbjct: 174 DQLAATIELAMAEAHASFGDPRVYLERYVASGRHVEVQVLGDGE------NVIHLGTRDC 227

Query: 203 ELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
            ++          PA  +   +  ++   A    + +  RG+   + L D      ++LE
Sbjct: 228 SIQRRYQKLVEEAPAPNLRDGLRADMHCAAITFAKHLEYRGLGTVELLVDCERDTFYFLE 287

Query: 262 IN 263
           +N
Sbjct: 288 MN 289


>gi|328768856|gb|EGF78901.1| hypothetical protein BATDEDRAFT_33473 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 379

 Score = 90.2 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 58/313 (18%), Positives = 105/313 (33%), Gaps = 42/313 (13%)

Query: 28  DAGFKVSQI--DVDRSVGLVLAHLKPD----LAFNVLHGN--FGEDG-LVQAILELLEIP 78
               ++  I  +  + +   LA  +      L  N+  G    G  G  V   L+   IP
Sbjct: 66  KTKVEIIPIAIETQQQIINQLAQKRASGEHMLVINLCDGTELDGYPGISVVKNLQNANIP 125

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT-----MDSQHLISPPYVIKPL 133
           ++ +       +  K   K+ +    V   P   +N  T       S+ ++S P +IKP 
Sbjct: 126 FSGADAHFYDGTTSKPALKRQLIKFNVETSPFQEINPGTELADIAASEKILSWPMIIKPS 185

Query: 134 KGGSSLG---IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD------ 184
              +S+      ++   +     + +         + IE+++ G E T    GD      
Sbjct: 186 VSYASMNISDTSIVHSKEEALCQIEKLCQL-TSQGIFIEKFLPGREFTALCTGDSRDGVK 244

Query: 185 ----------ASLDVTEIAVPKSDFYS-YELKYS---SLNSTHVLPAKIPLDIYKEVQRL 230
                      +L   E  +    ++  YEL         S+ V     P +    +Q L
Sbjct: 245 VYPVAERVFNPALKTEERILAFDRYWDGYELGSEAPAMTESSMVWYDLAPSEWQSHLQDL 304

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRK-VFWLEINVQPGMT---PVSIFPEMAAYAGYSFR 286
           A  A+ A G  G  R D       +     LE+N   G+      S   E+   +  S R
Sbjct: 305 ARRAYTACGGNGYGRVDIRTQSFDKPDALVLEVNANCGLAFGDGASSLGEILKLSKISPR 364

Query: 287 ELLLWMVEDASCL 299
           +  + +V  +   
Sbjct: 365 DFCMDLVRYSFAR 377


>gi|118590072|ref|ZP_01547476.1| acetyl-CoA carboxylase [Stappia aggregata IAM 12614]
 gi|118437569|gb|EAV44206.1| acetyl-CoA carboxylase [Stappia aggregata IAM 12614]
          Length = 448

 Score = 90.2 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 80/220 (36%), Gaps = 18/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     ILE   I +         +  DK+++KQ     G+PV P    
Sbjct: 77  AVHPGYGFLSENARFAEILEAHGIEFIGPTAEHIRIMGDKIQAKQTAKDLGIPVVPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGDQ 165
            +            I  P ++K   GG   G+ V + +  +   L     ++ +    D 
Sbjct: 137 AVTAGDDAHAIAREIGYPVLVKAAAGGGGRGMKVARSEAELDTALSTARSEAKAAFGDDA 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           L +E+Y+     +   V+GD   +   +            K             +     
Sbjct: 197 LYMEKYLGKPRHIEIQVLGDGKGNAVHLGERDCSLQRRHQKVL----EEAPSPSLNASQR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           KE+  +   A + +  RG+   +FL+   + + +++E+N 
Sbjct: 253 KEIGEIVAAAMRKLKYRGVGTVEFLY--ENGEFYFIEMNT 290


>gi|148241440|ref|YP_001226597.1| acetyl-CoA carboxylase biotin carboxylase subunit [Synechococcus
           sp. RCC307]
 gi|147849750|emb|CAK27244.1| Biotin carboxylase (A subunit of acetyl-CoA carboxylase)
           [Synechococcus sp. RCC307]
          Length = 449

 Score = 90.2 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 33/220 (15%), Positives = 73/220 (33%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+     I     + +      +     DK  +K  +   GVP  P    
Sbjct: 78  AIHPGYGFLAENDRFAEICSAHGLIFVGPSPESIRSMGDKSTAKATMQRVGVPTIPGSEG 137

Query: 114 NRFTMDSQHLI----SPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSWNHGDQ 165
              ++D    +      P +IK   GG   G+ +++    +         ++ +      
Sbjct: 138 LLASVDEAARLAGSMGYPVMIKATAGGGGRGMRLVRSADELENLFKAAQGEAEAAFGNPG 197

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           L +E+++     +   ++ D   +V  +            K             +  +  
Sbjct: 198 LYMEKFITRPRHVEVQILADRFGNVVHLGERDCSIQRRHQKLL----EEAPSPGLDPETR 253

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +   A  A + IG  G    +FL D    + +++E+N 
Sbjct: 254 RRMGEAAVAAAKTIGYEGAGTVEFLLDAS-GEFYFMEMNT 292


>gi|113954487|ref|YP_731653.1| acetyl-CoA carboxylase biotin carboxylase subunit [Synechococcus
           sp. CC9311]
 gi|113881838|gb|ABI46796.1| acetyl-CoA carboxylase, biotin carboxylase [Synechococcus sp.
           CC9311]
          Length = 447

 Score = 90.2 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 33/220 (15%), Positives = 73/220 (33%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     +     I +      A     DK  +K  + + GVP  P    
Sbjct: 78  AIHPGYGFLAENDRFAEMCRDHGITFIGPSPHAIRSMGDKSTAKSTMQAVGVPTVPGSEG 137

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGDQ 165
            +       +    +  P +IK   GG   G+ ++     +         ++ +      
Sbjct: 138 LLPNPEAAAELAAAMGYPVMIKATAGGGGRGMRLVPSPDQLVKLYKAAQGEADAAFGNPG 197

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           L +E+++D    +   ++ D   +V  +            K             +  ++ 
Sbjct: 198 LYMEKFIDRPRHVEVQILADRHGNVVHLGERDCSIQRRHQKLL----EEAPSPALDPELR 253

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +   A  A ++I   G    +FL D      +++E+N 
Sbjct: 254 RRMGEAAVAAARSINYEGAGTVEFLLDRSGG-FYFMEMNT 292


>gi|193873014|gb|ACF23197.1| D-alanine-D-alanine ligase [Streptococcus mitis]
          Length = 96

 Score = 90.2 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 30/96 (31%), Positives = 50/96 (52%), Gaps = 2/96 (2%)

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNST 212
               ++ +  ++L+EQ V+  E+  G++G+  +  T     V   DFY Y+ KY     T
Sbjct: 1   ALKLAFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVDFYDYDAKYIDNKIT 60

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
             +P KI  D+   +++ A  A +AIG  G+SR DF
Sbjct: 61  MDIPTKISDDVVAVMRQNAETAFRAIGGLGLSRCDF 96


>gi|193872860|gb|ACF23120.1| D-alanine-D-alanine ligase [Streptococcus mitis]
          Length = 96

 Score = 90.2 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 30/96 (31%), Positives = 50/96 (52%), Gaps = 2/96 (2%)

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNST 212
               ++ +  ++L+EQ V+  E+  G++G+  +  T     V    FY Y+ KY     T
Sbjct: 1   ALRLAFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKIT 60

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
             +PAKI  D+   +++ A  A +AIG  G+SR DF
Sbjct: 61  MDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDF 96


>gi|193872928|gb|ACF23154.1| D-alanine-D-alanine ligase [Streptococcus oralis]
          Length = 96

 Score = 90.2 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 30/96 (31%), Positives = 49/96 (51%), Gaps = 2/96 (2%)

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNST 212
               ++ +  ++L+EQ V+  E+  G++G+  +  T     V    FY Y+ KY     T
Sbjct: 1   ALELAFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKIT 60

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
             +PAKI  D+   ++  A  A +AIG  G+SR DF
Sbjct: 61  MDIPAKISDDVVAIMRHNAQTAFRAIGGLGLSRCDF 96


>gi|193872884|gb|ACF23132.1| D-alanine-D-alanine ligase [Streptococcus mitis]
          Length = 96

 Score = 90.2 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 31/96 (32%), Positives = 50/96 (52%), Gaps = 2/96 (2%)

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNST 212
               ++ +  ++L+EQ V+  E+  G++G+  +  T     V    FY Y+ KY     T
Sbjct: 1   ALKLAFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKIT 60

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
             +PAKI  D+   ++R A  A +AIG  G+SR DF
Sbjct: 61  MDIPAKISDDVVAVMRRNAETAFRAIGGLGLSRCDF 96


>gi|83414119|dbj|BAE53850.1| D-alanine:D-alanine ligase [Streptococcus oralis]
 gi|193872982|gb|ACF23181.1| D-alanine-D-alanine ligase [Streptococcus mitis]
 gi|193872984|gb|ACF23182.1| D-alanine-D-alanine ligase [Streptococcus mitis]
 gi|193872986|gb|ACF23183.1| D-alanine-D-alanine ligase [Streptococcus mitis]
          Length = 96

 Score = 90.2 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 30/96 (31%), Positives = 50/96 (52%), Gaps = 2/96 (2%)

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNST 212
               ++ +  ++L+EQ V+  E+  G++G+  +  T     V    FY Y+ KY     T
Sbjct: 1   ALELAFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKIT 60

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
             +PAKI  D+   +++ A  A +AIG  G+SR DF
Sbjct: 61  MDIPAKISNDVVAVMRQNAETAFRAIGGLGLSRCDF 96


>gi|83415060|dbj|BAE53789.1| D-alanine:D-alanine ligase [Streptococcus intermedius]
          Length = 96

 Score = 90.2 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 30/96 (31%), Positives = 45/96 (46%), Gaps = 2/96 (2%)

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNST 212
               ++ +  ++LIEQ V+  E+  G+ G+     +     V    FY YE KY     T
Sbjct: 1   ALKLAFKYDSRVLIEQGVNAREIEVGLFGNEGAKSSLPGEVVKDVAFYDYEAKYIDNKIT 60

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
             +PAK+  D+   +   A  A  AIG  G+SR DF
Sbjct: 61  MDIPAKLSEDVIATMCDYAEKAFHAIGGVGLSRCDF 96


>gi|302551602|ref|ZP_07303944.1| acetyl-CoA carboxylase, biotin carboxylase [Streptomyces
           viridochromogenes DSM 40736]
 gi|302469220|gb|EFL32313.1| acetyl-CoA carboxylase, biotin carboxylase [Streptomyces
           viridochromogenes DSM 40736]
          Length = 644

 Score = 90.2 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 40/217 (18%), Positives = 82/217 (37%), Gaps = 14/217 (6%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+           + +      A AL  DK+R+K+ V   GVPV P    
Sbjct: 83  AVHPGYGFLAENAAFARACAEAGLVFIGPPAEAIALMGDKIRAKETVREAGVPVVPG-GR 141

Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK----DQSIPLDLLQSSSWNHGDQLLIE 169
           +    ++   +  P ++KP  GG   G+ +++     ++ I     ++ +    D LL+E
Sbjct: 142 DPDLAEAARELGAPVLLKPSAGGGGKGMRLVRDLTRLEEEIASARREARASFGDDTLLVE 201

Query: 170 QYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           +++D    +   V+ D   +V  +   +        K             +       + 
Sbjct: 202 RWIDRPRHIEIQVLADGHGNVVHLGERECSLQRRHQKII----EEAPSVLLDEKTRSAMG 257

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLS-RKVFWLEINV 264
             A  A ++ G RG    +F+         +++E+N 
Sbjct: 258 EAAVQAARSCGYRGAGTVEFIVPGGDPSSYYFMEMNT 294


>gi|83414045|dbj|BAE53813.1| D-alanine:D-alanine ligase [Streptococcus oralis]
          Length = 96

 Score = 90.2 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 30/96 (31%), Positives = 50/96 (52%), Gaps = 2/96 (2%)

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNST 212
               ++ +  ++L+EQ V+  E+  G++G+  +  T     V    FY Y+ KY     T
Sbjct: 1   ALDLAFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKIT 60

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
             +PAKI  D+   +++ A  A +AIG  G+SR DF
Sbjct: 61  MDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDF 96


>gi|83414085|dbj|BAE53833.1| D-alanine:D-alanine ligase [Streptococcus oralis]
 gi|83414099|dbj|BAE53840.1| D-alanine:D-alanine ligase [Streptococcus oralis]
 gi|83414101|dbj|BAE53841.1| D-alanine:D-alanine ligase [Streptococcus oralis]
 gi|83414103|dbj|BAE53842.1| D-alanine:D-alanine ligase [Streptococcus oralis]
 gi|193872930|gb|ACF23155.1| D-alanine-D-alanine ligase [Streptococcus oralis]
          Length = 96

 Score = 89.8 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 30/96 (31%), Positives = 49/96 (51%), Gaps = 2/96 (2%)

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNST 212
               ++ +  ++L+EQ V+  E+  G++G+  +  T     V    FY Y+ KY     T
Sbjct: 1   ALELAFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKIT 60

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
             +PAKI  D+   ++  A  A +AIG  G+SR DF
Sbjct: 61  MDIPAKISDDVVAIMRHNAETAFRAIGGLGLSRCDF 96


>gi|83414037|dbj|BAE53809.1| D-alanine:D-alanine ligase [Streptococcus oralis]
 gi|83414041|dbj|BAE53811.1| D-alanine:D-alanine ligase [Streptococcus oralis]
 gi|83414043|dbj|BAE53812.1| D-alanine:D-alanine ligase [Streptococcus oralis]
 gi|83414053|dbj|BAE53817.1| D-alanine:D-alanine ligase [Streptococcus oralis]
 gi|83414063|dbj|BAE53822.1| D-alanine:D-alanine ligase [Streptococcus oralis]
 gi|83414069|dbj|BAE53825.1| D-alanine:D-alanine ligase [Streptococcus oralis]
 gi|83414071|dbj|BAE53826.1| D-alanine:D-alanine ligase [Streptococcus oralis]
 gi|83414075|dbj|BAE53828.1| D-alanine:D-alanine ligase [Streptococcus oralis]
 gi|193872922|gb|ACF23151.1| D-alanine-D-alanine ligase [Streptococcus oralis]
 gi|193872924|gb|ACF23152.1| D-alanine-D-alanine ligase [Streptococcus oralis]
 gi|193873046|gb|ACF23213.1| D-alanine-D-alanine ligase [Streptococcus oralis]
 gi|193873056|gb|ACF23218.1| D-alanine-D-alanine ligase [Streptococcus oralis]
          Length = 96

 Score = 89.8 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 30/96 (31%), Positives = 49/96 (51%), Gaps = 2/96 (2%)

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNST 212
               ++ +  ++L+EQ V+  E+  G++G+  +  T     V    FY Y+ KY     T
Sbjct: 1   ALELAFQYDSRVLVEQGVNAREIEVGLLGNYEVKSTLPGEVVKDVAFYDYDAKYIDNKIT 60

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
             +PAKI  D+   ++  A  A +AIG  G+SR DF
Sbjct: 61  MDIPAKISDDVVAVMRHNAETAFRAIGGLGLSRCDF 96


>gi|304314250|ref|YP_003849397.1| pyruvate carboxylase, subunit A [Methanothermobacter marburgensis
           str. Marburg]
 gi|302587709|gb|ADL58084.1| pyruvate carboxylase, subunit A [Methanothermobacter marburgensis
           str. Marburg]
          Length = 491

 Score = 89.8 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 45/239 (18%), Positives = 86/239 (35%), Gaps = 25/239 (10%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           IDV    G     + P   F   +   GE+       E   I              DK+ 
Sbjct: 67  IDVAEESGA--EAIHPGYGFLAENPGLGEE------CEKHGIKLIGPKSSVIEAMGDKIT 118

Query: 96  SKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
           SK+++   GVPV P     +       +    I  P +IK   GG  +G+  + ++  + 
Sbjct: 119 SKKLMKKAGVPVIPGTDKGVSDPDEAAEIADSIGYPVIIKASAGGGGIGMRTVYEEDELI 178

Query: 152 LDL-----LQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205
             +     + +S++     + IE+Y++    +   VM D   +V  +A  +        K
Sbjct: 179 RAMESTQSVAASAFG-DPTVYIEKYLEKPRHIEFQVMADEHGNVIHLADRECSIQRRHQK 237

Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
                        +  ++ + +   A  A + IG       +FL+   +   ++LE+N 
Sbjct: 238 ----LVEEAPSPIMTPELRERMGSAAVKAAEYIGYENAGTVEFLY--SNGDFYFLEMNT 290


>gi|225028541|ref|ZP_03717733.1| hypothetical protein EUBHAL_02820 [Eubacterium hallii DSM 3353]
 gi|224954142|gb|EEG35351.1| hypothetical protein EUBHAL_02820 [Eubacterium hallii DSM 3353]
          Length = 1154

 Score = 89.8 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 44/244 (18%), Positives = 94/244 (38%), Gaps = 26/244 (10%)

Query: 35  QIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSM 91
            +D+D  + + L+    D     +H  +G   E+       E   I +   G        
Sbjct: 69  YLDIDTIIKIALS-TGVD----AIHPGYGFLSENPDFADACERNGIVFIGPGSNIMNAMG 123

Query: 92  DKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI----SPPYVIKPLKGGSSLGIIVIKKD 147
           DK+ SK++     VP+ P +      +D    I      P ++K   GG   G+ ++ ++
Sbjct: 124 DKISSKKIAIEANVPIIPGVDYAIKEVDEAKKIAAQVGYPVMLKASNGGGGRGMRIVNRE 183

Query: 148 QSIPLDLLQS-----SSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYS 201
           + +  +  ++      ++   D + IE+Y+ G   +   ++GD   +V  +         
Sbjct: 184 EDLEKEFNEAKNESKKAFG-DDMIFIEKYLKGPKHIEVQIVGDNYGNVVHLY-----DRD 237

Query: 202 YELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260
             ++          PA  IP  + +E+   +    + +G R     +FL D      +++
Sbjct: 238 CSVQRRHQKVVEYAPAFSIPETVRQEIFDASIRLAKTVGYRNAGTLEFLVDA-DNHPYFI 296

Query: 261 EINV 264
           E+N 
Sbjct: 297 EMNP 300


>gi|83415048|dbj|BAE53783.1| D-alanine:D-alanine ligase [Streptococcus infantis]
 gi|193872882|gb|ACF23131.1| D-alanine-D-alanine ligase [Streptococcus infantis]
 gi|193873020|gb|ACF23200.1| D-alanine-D-alanine ligase [Streptococcus infantis]
 gi|193873032|gb|ACF23206.1| D-alanine-D-alanine ligase [Streptococcus infantis ATCC 700779]
          Length = 96

 Score = 89.8 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 31/96 (32%), Positives = 50/96 (52%), Gaps = 2/96 (2%)

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNST 212
               ++ +  ++L+EQ V+  E+  G++G+  +  T     V    FY YE KY     T
Sbjct: 1   ALELAFKYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDYEAKYIDNKIT 60

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
             +PAKI  D+   +++ A  A +AIG  G+SR DF
Sbjct: 61  MDIPAKISDDVVAVMRKNAEAAFRAIGGLGLSRCDF 96


>gi|83747359|ref|ZP_00944399.1| Hypothetical Protein RRSL_02878 [Ralstonia solanacearum UW551]
 gi|207739639|ref|YP_002258032.1| hypothetical protein RSIPO_04340 [Ralstonia solanacearum IPO1609]
 gi|83725946|gb|EAP73084.1| Hypothetical Protein RRSL_02878 [Ralstonia solanacearum UW551]
 gi|206593019|emb|CAQ59925.1| hypothetical protein RSIPO_04340 [Ralstonia solanacearum IPO1609]
          Length = 390

 Score = 89.8 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 72/338 (21%), Positives = 117/338 (34%), Gaps = 72/338 (21%)

Query: 18  SGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQA------I 71
           SG      L DAGF +            L     D  F        EDG+ QA      +
Sbjct: 57  SGADIGHCLRDAGFDLLTPHAAPDPARAL-----DWVFP-----DTEDGIAQAIGRGATM 106

Query: 72  LELLEIPYTHSGILASA--------------LSMDKMRSKQVVSSCGVPVCPSILVNRFT 117
           L    + +    I   A               + DK  +   +   G+PV  S L+ R  
Sbjct: 107 LWANTVLFRGHPIERRAGAAWVVGQAPALQQDADDKFATNARLRRHGLPVAASALIGREA 166

Query: 118 MDS-------------QHLISPPYVIKPLKGGSSLGIIVIKK---DQSIPLDLLQSSSWN 161
             S             +  ++ P VIKP++G  S G+ ++      Q     LL + ++ 
Sbjct: 167 GGSLPPLQALREGDLHRAGLAFPLVIKPVRGRGSEGVTLVHDLPSMQRAAAGLLDNGAF- 225

Query: 162 HGDQLLIEQYVDGIELTCGVM-GDASLDVTE--------IAVPKSDFYSYELKYSSLNST 212
            GD L+ E ++ G ELT  V+     L              V + +       Y+   + 
Sbjct: 226 -GDALIAETFLAGEELTVTVLPRQDDLPAAFSSDTASALPPVRRFNHVDGVAPYNGAVAV 284

Query: 213 HVLPAKIPLD-----IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPG 267
                 + ++       + + R   LA+ A+G R   R D   D         ++N++P 
Sbjct: 285 TRNSVALSVEAAMAPEARALIRACLLAYDAVGARAPIRIDCRADAH-GAYQLFDLNMKPN 343

Query: 268 MT---------PVSIFPEMAAYAGYSFRELLLWMVEDA 296
           MT           S+    A   G+ +RELL+ M+  A
Sbjct: 344 MTGAGRPGREDQDSLSALAARAVGWDYRELLVRMMGAA 381


>gi|227488279|ref|ZP_03918595.1| carbamoyl-phosphate-synthetase [Corynebacterium glucuronolyticum
           ATCC 51867]
 gi|227091849|gb|EEI27161.1| carbamoyl-phosphate-synthetase [Corynebacterium glucuronolyticum
           ATCC 51867]
          Length = 400

 Score = 89.8 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 89/227 (39%), Gaps = 33/227 (14%)

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYVIKPLKGGS 137
               + A+ LS +K+  K+V++  GV      ++   +   D    +S P VIK      
Sbjct: 93  VGISVAAAQLSQNKIAMKRVLADHGVMTPQFRVIRTLSELGDVCAELSFPLVIKAPDLQG 152

Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG--VMGDASLDVTEIAVP 195
           S GI ++K D+   +  + +   +  + L++E+++DG E      V+ +  L V      
Sbjct: 153 SNGIFIVKDDEEAQVAFVGAQQASKQESLIVEEFIDGTEFGAQAIVLDNEILFVLC---- 208

Query: 196 KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS-RSDFLFDPLS 254
                +   K +   S H +PA +P +I +        A +A+G +  +   D + D   
Sbjct: 209 -HGDETVRAKTNIPIS-HFVPANLPEEIQQRATTEVKKAIRALGLKNCAVNVDLILDSQG 266

Query: 255 RKVFWLE------INVQP---GMTPVSIFPEMAAYAGYSFRELLLWM 292
                +E       N  P   G            + G  + EL+L +
Sbjct: 267 --CHIIELTGRVGANGLPEVVG-----------KWFGIDYYELILRV 300


>gi|307721321|ref|YP_003892461.1| Carbamoyl-phosphate synthase L chain ATP-binding protein
           [Sulfurimonas autotrophica DSM 16294]
 gi|306979414|gb|ADN09449.1| Carbamoyl-phosphate synthase L chain ATP-binding protein
           [Sulfurimonas autotrophica DSM 16294]
          Length = 475

 Score = 89.8 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 48/271 (17%), Positives = 92/271 (33%), Gaps = 37/271 (13%)

Query: 21  ACASALEDAGFKVSQIDVD--------------RSVGLVLAHLKPDLAFNVLHGNFG--- 63
           A  S ++  G  V + D                +++  +    + D     +H  +G   
Sbjct: 32  AIFSEVDKDGVWVQKADNSFAISGDPVEAYLDYKNLINIAMRTRCD----AIHPGYGFLS 87

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN----RFTMD 119
           E        E  +I +        AL  DKM SK  V   GVPV    +      +    
Sbjct: 88  ESAEFAKACEENDIIFIGPKAEHIALFGDKMASKTAVKKVGVPVLEGTVEPVMDAKEGEQ 147

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL----DLLQSSSWNHGDQLLIEQYV-DG 174
               I  P +IK   GG   G+ ++   +           ++  +    ++ IE++V + 
Sbjct: 148 IASEIGFPVIIKAAFGGGGRGMRIVHNAKEFQELFESATNEAIKYFGKGEVFIEKFVQNP 207

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFL 233
             +   ++ D   +V  +            K        + P  ++     K++ + A  
Sbjct: 208 RHIEVQIVADKYGNVVHLGERDCSIQRRHQK-----VIEIAPSPRLSDATRKKLCQTAVN 262

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           A Q IG   +   +FL D      +++E+N 
Sbjct: 263 AVQEIGYENVGTVEFLVDDNDD-FYFIEMNT 292


>gi|7157931|gb|AAF37345.1|AF170806_1 D-alanine:D-alanine ligase [Enterococcus mundtii]
          Length = 105

 Score = 89.8 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 25/107 (23%), Positives = 55/107 (51%), Gaps = 4/107 (3%)

Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AV 194
           SS+GI   +  + +   L  ++++ +  + ++EQ ++  E+   V+G+  +  T     V
Sbjct: 1   SSVGITKAENREELQNAL--ATAYQYDSRAIVEQGIEAREIEVAVLGNEDVRTTLPGEVV 58

Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241
               FY Y+ KY +      +PA++P +++++ Q  A LA+  +G  
Sbjct: 59  KDVAFYDYDAKYINNRIEMQIPAEVPEEVHQKAQEYAKLAYTMLGGS 105


>gi|302876928|ref|YP_003845561.1| acetyl-CoA carboxylase, biotin carboxylase [Clostridium
           cellulovorans 743B]
 gi|307687617|ref|ZP_07630063.1| biotin carboxylase [Clostridium cellulovorans 743B]
 gi|302579785|gb|ADL53797.1| acetyl-CoA carboxylase, biotin carboxylase [Clostridium
           cellulovorans 743B]
          Length = 448

 Score = 89.8 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 88/220 (40%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  FG   E+     + E   I +      A  L  +K R+++++   GVP+ P    
Sbjct: 77  AIHPGFGFLSENSRFAKMCEECNIKFIGPNYKAIDLMGNKARAREIMREAGVPIVPGYEG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL----DLLQSSSWNHGDQ 165
            I      ++    I  P ++K   GG   GI ++ K++ +         +S +    D 
Sbjct: 137 AIRDEEHALEIAKEIGFPVMVKAASGGGGKGIKIVYKEEDLASSYNTAKAESKANFGDDT 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+Y++    +   ++GD   +V  +            + +           +  +  
Sbjct: 197 MYIEKYIEKPKHIEIQILGDDYGNVVHLGERDCSV----QRKNQKVIEEAPSTVLSEETR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +  +A  A +A+    +   +FL+D ++   +++E+N 
Sbjct: 253 QIMGEIAKKAAKAVNYNSVGTIEFLYD-INGNFYFMEMNT 291


>gi|171684063|ref|XP_001906973.1| hypothetical protein [Podospora anserina S mat+]
 gi|170941992|emb|CAP67644.1| unnamed protein product [Podospora anserina S mat+]
          Length = 749

 Score = 89.8 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 82/223 (36%), Gaps = 20/223 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            LH  +G   E+       E   I +      A     DK RSK ++++ GVP  P    
Sbjct: 120 ALHPGYGFLSENPTFAQACEDAGIVFVGPPPKAMLDMGDKARSKIIMNAAGVPCVPGYHG 179

Query: 114 NRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH------G 163
              +++        I  P ++K +KGG   G+ ++ KD+     +  +           G
Sbjct: 180 PEQSVEELRGHAREIGYPVLLKSVKGGGGKGMRIVLKDEEFEAQIASARQEARASFGDGG 239

Query: 164 DQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPL 221
           + +L+E+YV     +   V  D   +   +           ++          PA  +  
Sbjct: 240 EVMLVEKYVVRPRHVEVQVFADRYGNCVALGE-----RDCSVQRRHQKILEESPAPVLDD 294

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
               ++   A  A  A+   G    +F+ D  + K +++E+N 
Sbjct: 295 ATRHDLWDKARKAALAVDYVGAGTVEFILDKDTGKFYFMEMNT 337


>gi|193873018|gb|ACF23199.1| D-alanine-D-alanine ligase [Streptococcus infantis]
          Length = 96

 Score = 89.8 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 30/96 (31%), Positives = 50/96 (52%), Gaps = 2/96 (2%)

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNST 212
               ++ +  ++L+EQ V+  E+  G++G+  +  T     V    FY Y+ KY     T
Sbjct: 1   ALELAFKYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKIT 60

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
             +PAKI  D+   +++ A  A +AIG  G+SR DF
Sbjct: 61  MDIPAKISDDVVAVMRKNAETAFRAIGGLGLSRCDF 96


>gi|78778447|ref|YP_396559.1| acetyl-CoA carboxylase biotin carboxylase subunit [Prochlorococcus
           marinus str. MIT 9312]
 gi|78711946|gb|ABB49123.1| acetyl-CoA carboxylase, biotin carboxylase [Prochlorococcus marinus
           str. MIT 9312]
          Length = 448

 Score = 89.8 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 43/220 (19%), Positives = 86/220 (39%), Gaps = 18/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---S 110
            +H  +G   E+     +     I +      A     DK  +K+ + + GVP  P    
Sbjct: 77  AIHPGYGFLAENDKFAEMCNDHGIVFIGPSPNAIRSMGDKSTAKETMEAVGVPTVPGSKG 136

Query: 111 ILVN-RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSWNHGDQ 165
           +L N          I  P +IK   GG   G+ +++   ++         ++ +    D 
Sbjct: 137 LLSNVDEAYKLADDIGYPVIIKATAGGGGRGMRLVENADNLEKMFKAAQGEAEAAFGNDG 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           L +E+++     +   ++ D S +V  +        S + ++  L      PA I  ++ 
Sbjct: 197 LYMEKFIKKPRHVEIQILADRSGNVVHLGERD---CSVQRRHQKLLEESPSPA-INTELR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K++   A  A ++IG  G    +FL D      +++E+N 
Sbjct: 253 KKMGNAAIAAAKSIGYEGAGTVEFLVD--DDNFYFMEMNT 290


>gi|222824290|ref|YP_002575864.1| acetyl-CoA carboxylase, biotin carboxylase [Campylobacter lari
           RM2100]
 gi|222539511|gb|ACM64612.1| acetyl-CoA carboxylase, biotin carboxylase [Campylobacter lari
           RM2100]
          Length = 443

 Score = 89.8 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 82/224 (36%), Gaps = 15/224 (6%)

Query: 50  KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109
           + D  F   +G   E+     I     I +    + A AL  DK ++KQV+   GVPV P
Sbjct: 75  EADAIFPG-YGFLSENQNFVEICAKHNIKFIGPSVAAMALMSDKSKAKQVMQRAGVPVIP 133

Query: 110 SI--LVNRFTMDS--QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH--- 162
                +N           I  P ++K   GG   G+ V++ ++ +      + S      
Sbjct: 134 GSDGALNGVEAAKKLAKEIGYPVILKAAAGGGGRGMRVVEDEKDLEKAYWSAESEAMSAF 193

Query: 163 -GDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
               + +E+Y+ +   +   ++GD+  +V  +            K             + 
Sbjct: 194 GDGTMYMEKYIQNPRHIEVQIIGDSFGNVIHLGERDCSMQRRHQK----LIEESPAILLD 249

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
                 +   A  A +AI   G    +FL D  +   +++E+N 
Sbjct: 250 EKTRARLHETAVKAAKAIDYEGAGTFEFLVDK-NLDFYFIEMNT 292


>gi|193872858|gb|ACF23119.1| D-alanine-D-alanine ligase [Streptococcus mitis]
          Length = 96

 Score = 89.8 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 30/96 (31%), Positives = 50/96 (52%), Gaps = 2/96 (2%)

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNST 212
               ++ +  ++L+EQ V+  E+  G++G+  +  T     V    FY Y+ KY     T
Sbjct: 1   ALKLAFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKIT 60

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
             +PAKI  D+   +++ A  A +AIG  G+SR DF
Sbjct: 61  MDIPAKISNDVIAVMRQNAETAFRAIGGLGLSRCDF 96


>gi|222148841|ref|YP_002549798.1| propionyl-coenzyme A carboxylase alpha polypeptide [Agrobacterium
           vitis S4]
 gi|221735827|gb|ACM36790.1| propionyl-coenzyme A carboxylase alpha polypeptide [Agrobacterium
           vitis S4]
          Length = 1243

 Score = 89.8 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 44/256 (17%), Positives = 95/256 (37%), Gaps = 30/256 (11%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      L+   I +        A    K  ++Q+ +  GVP+ P   +
Sbjct: 77  AVHPGYGFLSENIGFAERLQAEGIAFIGPTPENIASFGLKHTARQLAADSGVPLLPGSGL 136

Query: 114 NRFTMDS---QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ----SSSWNHGDQL 166
                D+     LI  P ++K   GG  +G+ +     S+          + +     ++
Sbjct: 137 LDSAEDALSQAELIGYPVMLKSTAGGGGIGMQLCHDATSLQAAFDTVQRTAKASFGDARV 196

Query: 167 LIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIY 224
            +E++V     +   + GD    V  +           L+  +       PA  +   + 
Sbjct: 197 YLERFVSKARHVEVQIFGDGQGRVIALGE-----RDCSLQRRNQKVIEETPAPGLSDAVR 251

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI---FPEMAAYA 281
           + +   A    +++  R     +F++DP  ++ ++LE+N +       +    P   A  
Sbjct: 252 QRLHAAAVSLGRSVHYRSAGTVEFIYDPARKEFYFLEVNTR-------LQVEHPVTEAVF 304

Query: 282 GYSFRELLLWMVEDAS 297
           G    +L+ WM+  A+
Sbjct: 305 GI---DLVEWMIRQAA 317


>gi|148926279|ref|ZP_01809964.1| biotin carboxylase [Campylobacter jejuni subsp. jejuni CG8486]
 gi|145845450|gb|EDK22543.1| biotin carboxylase [Campylobacter jejuni subsp. jejuni CG8486]
          Length = 455

 Score = 89.8 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 42/215 (19%), Positives = 78/215 (36%), Gaps = 14/215 (6%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVN 114
           +G   E+     I     I +    + A  L  DK ++KQV+   GVPV P     +   
Sbjct: 95  YGFLSENQNFVEICAKHNIKFIGPSVEAMNLMSDKSKAKQVMQRAGVPVIPGSDGALAGA 154

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQLLIEQ 170
                    I  P ++K   GG   G+ V++ ++ +      + S          + +E+
Sbjct: 155 EAAKKLAKEIGYPVILKAAAGGGGRGMRVVENEKDLEKAYWSAESEAMTAFGDGTMYMEK 214

Query: 171 YV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           Y+ +   +   V+GD+  +V  +            K             +       +  
Sbjct: 215 YIQNPRHIEVQVIGDSFGNVIHVGERDCSMQRRHQK----LIEESPAILLDEKTRTRLHE 270

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            A  A +AIG  G    +FL D  +   +++E+N 
Sbjct: 271 TAVKAAKAIGYEGAGTFEFLVDK-NLDFYFIEMNT 304


>gi|83414073|dbj|BAE53827.1| D-alanine:D-alanine ligase [Streptococcus oralis]
 gi|83414093|dbj|BAE53837.1| D-alanine:D-alanine ligase [Streptococcus oralis]
 gi|193872856|gb|ACF23118.1| D-alanine-D-alanine ligase [Streptococcus oralis]
 gi|193872902|gb|ACF23141.1| D-alanine-D-alanine ligase [Streptococcus infantis]
 gi|193872916|gb|ACF23148.1| D-alanine-D-alanine ligase [Streptococcus oralis]
          Length = 96

 Score = 89.8 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 30/96 (31%), Positives = 49/96 (51%), Gaps = 2/96 (2%)

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNST 212
               ++ +  ++L+EQ V+  E+  G++G+  +  T     V    FY Y+ KY     T
Sbjct: 1   ALELAFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKIT 60

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
             +PAKI  D+   ++  A  A +AIG  G+SR DF
Sbjct: 61  MDIPAKISDDVVAVMRHNAETAFRAIGGLGLSRCDF 96


>gi|50120847|ref|YP_050014.1| putative allophanate hydrolase [Pectobacterium atrosepticum
           SCRI1043]
 gi|49611373|emb|CAG74820.1| putative allophanate hydrolase [Pectobacterium atrosepticum
           SCRI1043]
          Length = 1200

 Score = 89.8 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 40/256 (15%), Positives = 84/256 (32%), Gaps = 30/256 (11%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       E  +I +         +   K  ++ +     VP+     +
Sbjct: 77  AIHPGYGFLSENAAFAEACETAQIAFVGPTPQQLRVFGLKHTARALAKKYHVPLLEGTEL 136

Query: 114 NR---FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQL 166
                  + +   I  P ++K   GG  +G+ V      +                   +
Sbjct: 137 LENIDAALCAAAEIGYPVMLKSTAGGGGIGMRVCYSATELSEAFETVKRLGQNNFSDAGV 196

Query: 167 LIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
            IE+Y++    L   + GD   +V  + V          K             +P  +  
Sbjct: 197 FIEKYIERARHLEVQIFGDGQGEVLALGVRDCSVQRRNQK----VIEETPAPNLPDGVAD 252

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285
            +   A    QA+  R     +F++D  + + ++LE+N             +    G + 
Sbjct: 253 ALCSAAISLAQAVNYRSAGTVEFVYDSATDRFYFLEVNT-----------RLQVEHGVTE 301

Query: 286 R----ELLLWMVEDAS 297
           +    +L+ WM+E A+
Sbjct: 302 QVWGVDLVRWMIELAA 317


>gi|324506496|gb|ADY42774.1| Methylcrotonoyl-CoA carboxylase subunit alpha [Ascaris suum]
          Length = 681

 Score = 89.8 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 41/221 (18%), Positives = 76/221 (34%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+           I +      A      K  SKQ+++  GVPV      
Sbjct: 105 AIHPGYGFLSENATFAEKCASAGIIFIGPPPKAIRDMGAKSVSKQLMADAGVPVVMGYHG 164

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
              T D        I  P ++K + GG   G+ +          L     ++      D+
Sbjct: 165 REQTDDRLRHEAANIGYPVMLKAVYGGGGKGMRIAWNANEFNEKLASARSEALKAFGNDE 224

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           +++E++V+    +   V GD       +           ++          PA  +    
Sbjct: 225 MIVEKFVERPRHVEVQVFGDHHGSYVYLWE-----RDCSVQRRHQKIIEEAPAPGLDTKA 279

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              +   A  A +A+G  G    +F+ DP   + F++E+N 
Sbjct: 280 RLRLGESAVRAARAVGYVGAGTVEFIMDPR-GEFFFMEMNT 319


>gi|166033410|ref|ZP_02236239.1| hypothetical protein DORFOR_03136 [Dorea formicigenerans ATCC
           27755]
 gi|166026595|gb|EDR45352.1| hypothetical protein DORFOR_03136 [Dorea formicigenerans ATCC
           27755]
          Length = 1175

 Score = 89.8 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 42/244 (17%), Positives = 89/244 (36%), Gaps = 26/244 (10%)

Query: 35  QIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSM 91
            +D+D  + + L +   D     +H  +G   E+       E   I +            
Sbjct: 93  YLDIDTIIKIAL-NAGVD----AIHPGYGFLSENPEFVDACEQNGITFIGPSSDIMRAMG 147

Query: 92  DKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI----SPPYVIKPLKGGSSLGIIVIKKD 147
           DK+ SKQ+  +  VP+ P +     + +    I      P ++K   GG   G+ ++   
Sbjct: 148 DKISSKQIAIAADVPIIPGVDHAMKSYEEAAKIADMVGYPIMLKASNGGGGRGMRIVNDP 207

Query: 148 QSIPLDLLQSS-----SWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYS 201
             +  +  ++      ++   D + +E+Y+ G   +   V+GD   +V            
Sbjct: 208 ADLEKEFNEARNESKKAFG-DDMIFVEKYLKGPKHIEVQVIGDNYGNVV-----HLFDRD 261

Query: 202 YELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260
             ++          PA  IP +  +++   A    + +G       +FL D      +++
Sbjct: 262 CSVQRRHQKVVEYAPAFTIPDETREKIFDAAIRLCKNVGYVNAGTLEFLVD-RDNNPYFI 320

Query: 261 EINV 264
           E+N 
Sbjct: 321 EMNP 324


>gi|188997642|ref|YP_001931893.1| acetyl-CoA carboxylase, biotin carboxylase [Sulfurihydrogenibium
           sp. YO3AOP1]
 gi|188932709|gb|ACD67339.1| acetyl-CoA carboxylase, biotin carboxylase [Sulfurihydrogenibium
           sp. YO3AOP1]
          Length = 451

 Score = 89.8 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 43/220 (19%), Positives = 84/220 (38%), Gaps = 14/220 (6%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC--- 108
           D  +   +G   E+    AI E   I +         L+ DK ++++V    GVP+    
Sbjct: 79  DAVYPG-YGFLAENPTFAAICERSNIKFIGPSSETIKLTGDKAQAREVAKKAGVPIIHGS 137

Query: 109 PSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS----IPLDLLQSSSWNHGD 164
           P +   +  ++    I  P +IK   GG   G+ V   +Q     +PL   ++ S     
Sbjct: 138 PPVEELKEALEISSEIGYPVLIKAAAGGGGRGMRVAHNEQELARLLPLAQREAESSFGDR 197

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           ++ IE++++    +   ++ D   +V  +   +        K             I   I
Sbjct: 198 RVYIEKFIENPKHIEIQILADEFGNVIHLGERECSVQRRHQK----LIEESPSPFIDEKI 253

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            KE+   A    +A+   G    +F+ D      +++E+N
Sbjct: 254 RKEMGEAAVKFAKAVNFTGAGTVEFIVDKNKN-FYFIEMN 292


>gi|193872920|gb|ACF23150.1| D-alanine-D-alanine ligase [Streptococcus oralis]
          Length = 96

 Score = 89.8 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 30/96 (31%), Positives = 49/96 (51%), Gaps = 2/96 (2%)

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNST 212
               ++ +  ++L+EQ V+  E+  G++G+  +  T     V    FY Y+ KY     T
Sbjct: 1   ALELAFQYDSRILVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKIT 60

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
             +PAKI  D+   ++  A  A +AIG  G+SR DF
Sbjct: 61  MDIPAKISDDVAAVMRHNAETAFRAIGGLGLSRCDF 96


>gi|260427676|ref|ZP_05781655.1| acetyl-CoA carboxylase, biotin carboxylase [Citreicella sp. SE45]
 gi|260422168|gb|EEX15419.1| acetyl-CoA carboxylase, biotin carboxylase [Citreicella sp. SE45]
          Length = 451

 Score = 89.8 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 74/220 (33%), Gaps = 18/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+     ++E  ++ +         +  DK+ +K  + + GVP  P    
Sbjct: 77  AIHPGYGFLSENARFVQMVEDHDLTFIGPSAEHIRVMGDKITAKDTMKALGVPCVPGSDG 136

Query: 114 NRFTMDSQHLI----SPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGDQ 165
               +DS   I      P +IK   GG   G+ V   +  +         ++ +    D+
Sbjct: 137 GVPDVDSAKKIGAEFGYPVIIKATAGGGGRGMKVATSEAEMERAFQTARAEAKAAFGNDE 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+Y+     +   V GD   +   +            K             I  +  
Sbjct: 197 VYIEKYLQKPRHIEIQVFGDGKGNAVHLGERDCSLQRRHQKVF----EEAPGPCITEEER 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +      A   +   G    +FL+     + +++E+N 
Sbjct: 253 NRIGATCAKAVADLKYSGAGTVEFLY--EDGEFYFIEMNT 290


>gi|220936246|ref|YP_002515145.1| urea carboxylase [Thioalkalivibrio sp. HL-EbGR7]
 gi|219997556|gb|ACL74158.1| urea carboxylase [Thioalkalivibrio sp. HL-EbGR7]
          Length = 1204

 Score = 89.8 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 41/260 (15%), Positives = 90/260 (34%), Gaps = 32/260 (12%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-L 112
            +H  +G   E+       E   I +             K  ++ + +  GVP+ P   L
Sbjct: 77  AIHPGYGFLSENAAFAEACEQAGIAFIGPTPQQMRDFGLKHTARSLAAENGVPLLPGTGL 136

Query: 113 VNRFTMDSQHLI--SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG----DQL 166
           ++      +  +    P ++K   GG  +G+ + + ++ +          +        +
Sbjct: 137 LDDLDHARREALRIGYPVMLKSTAGGGGIGMQICRSEKQLEEAFHSVERLSRNNFGQGGI 196

Query: 167 LIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIY 224
            +E+YV+    L   + GD    V  +           ++  +       PA  I   + 
Sbjct: 197 FLEKYVEYARHLEVQIFGDGEGRVVALGE-----RDCSVQRRNQKVIEETPAPGIDDGLR 251

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
            ++   A    QA+  R     ++++D  +   ++LE+N             +    G +
Sbjct: 252 AQLMDAAVRLGQAVNYRSAGTVEYVYDTRTGAFYFLEVNT-----------RLQVEHGVT 300

Query: 285 FR----ELLLWMVEDASCLR 300
                 +L+ WMV  A+  R
Sbjct: 301 EEVTGVDLVAWMVRLAAGER 320


>gi|224060759|ref|XP_002192539.1| PREDICTED: methylcrotonoyl-Coenzyme A carboxylase 1 (alpha)
           [Taeniopygia guttata]
          Length = 903

 Score = 89.8 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 81/221 (36%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H  +G   E+     + +   I +      A      K  SK ++S+ GVPV      
Sbjct: 305 AVHPGYGFLSENTEFADLCKQQGIIFIGPPSSAIRDMGIKSTSKAIMSAAGVPVVEGYHG 364

Query: 113 ---VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS----IPLDLLQSSSWNHGDQ 165
               +    +    I  P +IK ++GG   G+ +   ++     +     ++    + D 
Sbjct: 365 EDQSDECLKEHAKRIGYPVMIKAVRGGGGKGMRIAYSEKEFLDQLESARREAKKSFNDDA 424

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDI 223
           +LIE++VD    +   V GD   +   +           ++          P   I  ++
Sbjct: 425 MLIEKFVDNPRHVEVQVFGDQHGNAVYL-----FERDCSVQRRHQKIIEEAPGPGISPEV 479

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +   A  A +A+   G    +F+ D      +++E+N 
Sbjct: 480 RRRLGEAAVRAAKAVNYVGAGTVEFIMDSQHN-FYFMEMNT 519


>gi|88596179|ref|ZP_01099416.1| acetyl-CoA carboxylase, biotin carboxylase [Campylobacter jejuni
           subsp. jejuni 84-25]
 gi|218562901|ref|YP_002344680.1| biotin carboxylase [Campylobacter jejuni subsp. jejuni NCTC 11168]
 gi|88191020|gb|EAQ94992.1| acetyl-CoA carboxylase, biotin carboxylase [Campylobacter jejuni
           subsp. jejuni 84-25]
 gi|112360607|emb|CAL35404.1| biotin carboxylase [Campylobacter jejuni subsp. jejuni NCTC 11168]
 gi|284926514|gb|ADC28866.1| biotin carboxylase [Campylobacter jejuni subsp. jejuni IA3902]
 gi|315928423|gb|EFV07736.1| acetyl-CoA carboxylase, biotin carboxylase [Campylobacter jejuni
           subsp. jejuni DFVF1099]
 gi|315928901|gb|EFV08159.1| acetyl-CoA carboxylase, biotin carboxylase [Campylobacter jejuni
           subsp. jejuni 305]
          Length = 443

 Score = 89.8 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 42/215 (19%), Positives = 78/215 (36%), Gaps = 14/215 (6%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVN 114
           +G   E+     I     I +    + A  L  DK ++KQV+   GVPV P     +   
Sbjct: 83  YGFLSENQNFVEICAKHNIKFIGPSVEAMNLMSDKSKAKQVMQRAGVPVIPGSDGALAGA 142

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQLLIEQ 170
                    I  P ++K   GG   G+ V++ ++ +      + S          + +E+
Sbjct: 143 EAAKKLAKEIGYPVILKAAAGGGGRGMRVVENEKDLEKAYWSAESEAMTAFGDGTMYMEK 202

Query: 171 YV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           Y+ +   +   V+GD+  +V  +            K             +       +  
Sbjct: 203 YIQNPRHIEVQVIGDSFGNVIHVGERDCSMQRRHQK----LIEESPAILLDEKTRTRLHE 258

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            A  A +AIG  G    +FL D  +   +++E+N 
Sbjct: 259 TAIKAAKAIGYEGAGTFEFLVDK-NLDFYFIEMNT 292


>gi|83415044|dbj|BAE53781.1| D-alanine:D-alanine ligase [Streptococcus oralis]
 gi|193872926|gb|ACF23153.1| D-alanine-D-alanine ligase [Streptococcus oralis ATCC 35037]
 gi|193873034|gb|ACF23207.1| D-alanine-D-alanine ligase [Streptococcus infantis]
          Length = 96

 Score = 89.8 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 30/96 (31%), Positives = 51/96 (53%), Gaps = 2/96 (2%)

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNST 212
               ++ +  ++L+EQ V+  E+  G++G+  +  T     V    FY Y+ KY     T
Sbjct: 1   ALELAFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKIT 60

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
             +PAKI  D+   +++ A +A +AIG  G+SR DF
Sbjct: 61  MDIPAKISDDVVAVMRQNAEIAFRAIGGLGLSRCDF 96


>gi|312962236|ref|ZP_07776728.1| biotin carboxylase/biotin-containing subunit [Pseudomonas
           fluorescens WH6]
 gi|311283573|gb|EFQ62162.1| biotin carboxylase/biotin-containing subunit [Pseudomonas
           fluorescens WH6]
          Length = 627

 Score = 89.8 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 75/220 (34%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+           I +      A AL   K  SK  + + GVP       
Sbjct: 79  AIHPGYGFLSENPEFAQACLNAGITFIGPSPEAIALMGSKRLSKLAMLNAGVPCIAGYQG 138

Query: 114 NRFTM----DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS-----SWNHGD 164
           +             I  P +IK   GG   G+ ++ + + +   L  +      ++   +
Sbjct: 139 SAQDDTTLHAEAERIGYPLMIKASAGGGGRGMRLVHQREQLLEHLRTARSEAQNAFGSDE 198

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
            +L +  ++   +   + GD   ++  +            K             +  ++ 
Sbjct: 199 LILEQALIEPRHVEIQLFGDTQGNLIYLGERDCSIQRRHQK----VIEEAPCPVMTSELR 254

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +   A  A +A+   G    +FL D  + + ++LE+N 
Sbjct: 255 QAMGEAALKAGRAVNYVGAGTVEFLLD-RNGRFYFLEMNT 293


>gi|86151130|ref|ZP_01069346.1| acetyl-CoA carboxylase, biotin carboxylase [Campylobacter jejuni
           subsp. jejuni 260.94]
 gi|121612451|ref|YP_001000965.1| biotin carboxylase [Campylobacter jejuni subsp. jejuni 81-176]
 gi|157415553|ref|YP_001482809.1| biotin carboxylase [Campylobacter jejuni subsp. jejuni 81116]
 gi|315124744|ref|YP_004066748.1| acetyl-CoA carboxylase, biotin carboxylase [Campylobacter jejuni
           subsp. jejuni ICDCCJ07001]
 gi|85842300|gb|EAQ59546.1| acetyl-CoA carboxylase, biotin carboxylase [Campylobacter jejuni
           subsp. jejuni 260.94]
 gi|87249678|gb|EAQ72637.1| acetyl-CoA carboxylase, biotin carboxylase [Campylobacter jejuni
           subsp. jejuni 81-176]
 gi|157386517|gb|ABV52832.1| acetyl-CoA carboxylase [Campylobacter jejuni subsp. jejuni 81116]
 gi|307748193|gb|ADN91463.1| Biotin carboxylase [Campylobacter jejuni subsp. jejuni M1]
 gi|315018466|gb|ADT66559.1| acetyl-CoA carboxylase, biotin carboxylase [Campylobacter jejuni
           subsp. jejuni ICDCCJ07001]
 gi|315932441|gb|EFV11384.1| Acetyl-CoA carboxylase, biotin carboxylase [Campylobacter jejuni
           subsp. jejuni 327]
          Length = 443

 Score = 89.8 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 42/215 (19%), Positives = 78/215 (36%), Gaps = 14/215 (6%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVN 114
           +G   E+     I     I +    + A  L  DK ++KQV+   GVPV P     +   
Sbjct: 83  YGFLSENQNFVEICAKHNIKFIGPSVEAMNLMSDKSKAKQVMQRAGVPVIPGSDGALAGA 142

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQLLIEQ 170
                    I  P ++K   GG   G+ V++ ++ +      + S          + +E+
Sbjct: 143 EAAKKLAKEIGYPVILKAAAGGGGRGMRVVENEKDLEKAYWSAESEAMTAFGDGTMYMEK 202

Query: 171 YV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           Y+ +   +   V+GD+  +V  +            K             +       +  
Sbjct: 203 YIQNPRHIEVQVIGDSFGNVIHVGERDCSMQRRHQK----LIEESPAILLDEKTRTRLHE 258

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            A  A +AIG  G    +FL D  +   +++E+N 
Sbjct: 259 TAIKAAKAIGYEGAGTFEFLVDK-NLDFYFIEMNT 292


>gi|295694976|ref|YP_003588214.1| Carbamoyl-phosphate synthase L chain ATP- binding protein [Bacillus
           tusciae DSM 2912]
 gi|295410578|gb|ADG05070.1| Carbamoyl-phosphate synthase L chain ATP- binding protein [Bacillus
           tusciae DSM 2912]
          Length = 446

 Score = 89.8 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 81/220 (36%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+G      E   + +             K+ +++ + + GVPV P    
Sbjct: 78  AVHPGYGFLSENGDFAERCEREGLVFIGPSPEVIRAMGSKIEARRRMQAAGVPVVPGTER 137

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGDQ 165
            +      M++   I  P ++K   GG  +G+  ++  + +         ++ ++     
Sbjct: 138 PVDTLEEAMEAAEGIGYPLMVKASAGGGGIGMSRVETPEELKKTFESTRARAVNFFGDGA 197

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           L +E++V+G   +   V  DA  +   +   +        K             +   + 
Sbjct: 198 LFLEKWVEGPRHIEVQVAVDAHGNAVHLFERECSVQRRHQK----VVEESPSPFLNDAMR 253

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +   A     AIG R +   +FLFD      ++LE+N 
Sbjct: 254 ERLTAAALRGATAIGYRNLGTMEFLFDAKGN-FYFLEMNT 292


>gi|262369311|ref|ZP_06062639.1| urea carboxylase [Acinetobacter johnsonii SH046]
 gi|262315379|gb|EEY96418.1| urea carboxylase [Acinetobacter johnsonii SH046]
          Length = 1200

 Score = 89.8 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 35/251 (13%), Positives = 87/251 (34%), Gaps = 14/251 (5%)

Query: 22  CASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81
            A AL+      + + +++ +         +  F   +G   E        E   I +  
Sbjct: 47  IAIALDGLKPSDTYLSIEK-LIHAAQKTGAEAIFPG-YGFLSESAEFAEACEKNNIAFMG 104

Query: 82  SGILASALSMDKMRSKQVVSSCGVPVCPSILVN---RFTMDSQHLISPPYVIKPLKGGSS 138
                      K R++++ ++  VP+ P   +       + +   I  P ++K   GG  
Sbjct: 105 PTATQILEFGLKHRARELAAAAQVPMTPGTGLLGSLDEAISAATEIGYPIMLKSTAGGGG 164

Query: 139 LGIIVIKKDQSIPLDLL----QSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIA 193
           +G+     +Q++           + +     + +E+++D    +   + GD    V  + 
Sbjct: 165 IGLTRCDNEQALVEAYESVKRLGAQFFKDSGVFLERFIDRARHVEVQIFGDGQGQVVALG 224

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
                      K           A +P    +++ + A    +++  R     +F++D  
Sbjct: 225 ERDCSLQRRNQK----VVEETPAAHLPEATRQKLHQAAVELGKSVNYRSAGTVEFIYDAA 280

Query: 254 SRKVFWLEINV 264
             + ++LE+N 
Sbjct: 281 RDEFYFLEVNT 291


>gi|167005874|ref|ZP_02271632.1| acetyl-CoA carboxylase [Campylobacter jejuni subsp. jejuni 81-176]
          Length = 443

 Score = 89.8 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 42/215 (19%), Positives = 78/215 (36%), Gaps = 14/215 (6%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVN 114
           +G   E+     I     I +    + A  L  DK ++KQV+   GVPV P     +   
Sbjct: 83  YGFLSENQNFVEICAKHNIKFIGPSVEAMNLMSDKSKAKQVMQRAGVPVIPGSDGALAGA 142

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQLLIEQ 170
                    I  P ++K   GG   G+ V++ ++ +      + S          + +E+
Sbjct: 143 EAAKKLAKEIGYPVILKAAAGGGGRGMRVVENEKDLEKAYWSAESEAMKAFGDGTMYMEK 202

Query: 171 YV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           Y+ +   +   V+GD+  +V  +            K             +       +  
Sbjct: 203 YIQNPRHIEVQVIGDSFGNVIHVGERDCSMQRRHQK----LIEESPAILLDEKTRTRLHE 258

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            A  A +AIG  G    +FL D  +   +++E+N 
Sbjct: 259 TAIKAAKAIGYEGAGTFEFLVDK-NLDFYFIEMNT 292


>gi|88604413|ref|YP_504591.1| pyruvate carboxylase subunit A [Methanospirillum hungatei JF-1]
 gi|88189875|gb|ABD42872.1| pyruvate carboxylase subunit A [Methanospirillum hungatei JF-1]
          Length = 492

 Score = 89.8 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 47/290 (16%), Positives = 90/290 (31%), Gaps = 49/290 (16%)

Query: 13  EVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNV--------------- 57
           E+S+        A  + G     I  +     +  H   D AF V               
Sbjct: 14  EISIR----VMRACRELGIDTVAIYSEADKDSLFVHY-ADEAFPVGPAPPSKSYLNKERI 68

Query: 58  -----------LHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103
                      +H  +G   E+     +     I +        A    K+RSKQ +   
Sbjct: 69  ISVAKKAGAEAIHPGYGFLAENAEFAKLCTEEGITFIGPKSKTIAAMGSKIRSKQTMKGA 128

Query: 104 GVPVCPSILVNRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL---- 155
           GVPV P        +D        I  P ++K   GG  +G+ ++     I   +     
Sbjct: 129 GVPVLPGTDGGIDDLDMAATVADSIGYPVIVKASAGGGGIGMQIVHDPSEIESAIEGAMR 188

Query: 156 QSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHV 214
            + S      + IE+Y+     +   V  D   +   +   +        K         
Sbjct: 189 IAESAFGDRTVFIEKYLQKPRHVEVQVFCDEHDNRIHMFERECSIQRRHQK----LIEEA 244

Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
               +  ++ + +   A    +A+        +FL+D  + + +++E+N 
Sbjct: 245 PCPVMTPELRERMTNSALRVAEAVDYVNAGTVEFLYD--NGEYYFMEMNT 292


>gi|83415078|dbj|BAE53798.1| D-alanine:D-alanine ligase [Streptococcus mitis]
 gi|193873070|gb|ACF23225.1| D-alanine-D-alanine ligase [Streptococcus mitis]
          Length = 96

 Score = 89.8 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 30/96 (31%), Positives = 51/96 (53%), Gaps = 2/96 (2%)

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNST 212
               ++ +  ++L+EQ V+  E+  G++G+ ++  T     V    FY Y+ KY     T
Sbjct: 1   ALKLAFQYDSRILVEQGVNAREIEVGLLGNYNVKSTLPGEVVKDVAFYDYDAKYIDNKIT 60

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
             +PAKI  D+   +++ A  A +AIG  G+SR DF
Sbjct: 61  MDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDF 96


>gi|332637986|ref|ZP_08416849.1| pyruvate carboxylase [Weissella cibaria KACC 11862]
          Length = 1145

 Score = 89.8 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 42/244 (17%), Positives = 88/244 (36%), Gaps = 23/244 (9%)

Query: 33  VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASAL 89
            + +D+D  +  +      D     +H  +G   E+    A +E   I +    +    +
Sbjct: 58  AAYLDID-DILRIAKETGAD----AIHPGYGFLSENAEFAAKVEAAGIKFVGPKVKHLEI 112

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIK 145
             DK+ +KQ   + GVP  P       T+       H    P  +K   GG   G+ V+ 
Sbjct: 113 FGDKILAKQAAIAAGVPTVPGTDHPVETLAEAIAFGHENGFPVFVKSAAGGGGRGMRVVN 172

Query: 146 KDQSIPLDLLQSSSWNH----GDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFY 200
            ++ +     +++S          + +E+Y+ D   +   ++ D   +V  +    S   
Sbjct: 173 HEEELREAFERAASEAKASFGKSDVYLEKYLQDPKHVEIQILADEQGEVMHLFERDSSIQ 232

Query: 201 SYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260
               K       +     +  D+   +Q  A    Q++  +     +FL D      +++
Sbjct: 233 RRHQKII----EYAPAVSVSKDMRARIQAAAVALMQSVDYQSAGTVEFLVD--GDDFYFI 286

Query: 261 EINV 264
           E+N 
Sbjct: 287 EVNP 290


>gi|86152739|ref|ZP_01070944.1| acetyl-CoA carboxylase, biotin carboxylase [Campylobacter jejuni
           subsp. jejuni HB93-13]
 gi|85843624|gb|EAQ60834.1| acetyl-CoA carboxylase, biotin carboxylase [Campylobacter jejuni
           subsp. jejuni HB93-13]
          Length = 443

 Score = 89.8 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 42/215 (19%), Positives = 78/215 (36%), Gaps = 14/215 (6%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVN 114
           +G   E+     I     I +    + A  L  DK ++KQV+   GVPV P     +   
Sbjct: 83  YGFLSENQNFVEICAKHNIKFIGPSVEAMNLMSDKSKAKQVMQRAGVPVIPGSDGALAGA 142

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQLLIEQ 170
                    I  P ++K   GG   G+ V++ ++ +      + S          + +E+
Sbjct: 143 EAAKKLAKEIGYPVILKAAAGGGGRGMRVVENEKDLEKAYWSAESEAMTAFGDGTMYMEK 202

Query: 171 YV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           Y+ +   +   V+GD+  +V  +            K             +       +  
Sbjct: 203 YIQNPRHIEVQVIGDSFGNVIHVGERDCSMQRRHQK----LIEESPAILLDEKTRTRLHE 258

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            A  A +AIG  G    +FL D  +   +++E+N 
Sbjct: 259 TAIKAAKAIGYEGAGTFEFLVDK-NLDFYFIEMNT 292


>gi|83414107|dbj|BAE53844.1| D-alanine:D-alanine ligase [Streptococcus oralis]
 gi|83414109|dbj|BAE53845.1| D-alanine:D-alanine ligase [Streptococcus oralis]
          Length = 96

 Score = 89.4 bits (221), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 50/96 (52%), Gaps = 2/96 (2%)

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNST 212
               ++ +  ++L+EQ V+  E+  G++G+  +  T     V    FY Y+ KY     T
Sbjct: 1   ALELAFQYDSRVLVEQGVNAREIEIGLLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKIT 60

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
             +PA+I  D+   +++ A  A +AIG  G+SR DF
Sbjct: 61  MDIPARISDDVVAVMRQNAETAFRAIGGLGLSRCDF 96


>gi|120401370|ref|YP_951199.1| carbamoyl-phosphate synthase ATP-binding subunit L [Mycobacterium
           vanbaalenii PYR-1]
 gi|119954188|gb|ABM11193.1| Carbamoyl-phosphate synthase L chain, ATP-binding protein
           [Mycobacterium vanbaalenii PYR-1]
          Length = 665

 Score = 89.4 bits (221), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 34/218 (15%), Positives = 77/218 (35%), Gaps = 17/218 (7%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
           +G   E+           + +      A      K+ +K ++ + GVPV P   V     
Sbjct: 86  YGFLSENADFARACAQAGVIFVGPSPEAIVAMGSKIAAKDMMRAAGVPVLPGTTVESEED 145

Query: 119 DSQHLI-------SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQLL 167
                +         P ++K   GG   G+ +++ +  +   +  +            + 
Sbjct: 146 QDPERLRTAAADIGFPILVKAAFGGGGRGMRIVRGEHELVEAVASARREAASAFGDGTVF 205

Query: 168 IEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE 226
           +E++V+    +   + GD+   V  +   +    S + +Y  +         +   +  E
Sbjct: 206 LEKFVESPRHIEVQIFGDSHGTVVHLGERE---CSIQRRYQKI-IEEAPSTAVDERLRDE 261

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + R A  A +A+   G    +F+  P     ++LE+N 
Sbjct: 262 LGRAAVAAGKALSYEGAGTVEFVMAP-DGSFYFLEVNT 298


>gi|329847549|ref|ZP_08262577.1| methylcrotonoyl-CoA carboxylase subunit alpha [Asticcacaulis
           biprosthecum C19]
 gi|328842612|gb|EGF92181.1| methylcrotonoyl-CoA carboxylase subunit alpha [Asticcacaulis
           biprosthecum C19]
          Length = 572

 Score = 89.4 bits (221), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 44/225 (19%), Positives = 81/225 (36%), Gaps = 22/225 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       E   + +      A +    K  +K +++  GVPV P    
Sbjct: 77  AIHPGYGFLSENVEFARACETAGLTFIGPTPEAISAMALKGAAKALMTQAGVPVTPGYHG 136

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
           +  + D        I  P +IK + GG   G+  + + +     L  +           +
Sbjct: 137 DDQSPDKLLSEAERIGWPVLIKAVAGGGGKGMRRVDRAKDFADALTSAQREGQNAFSDPK 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDI 223
           +LIE+Y++    +   V GD    V              L+          PA  +P  +
Sbjct: 197 VLIEKYIEVPRHIEIQVFGDKHGQVV-----HLFERDCSLQRRHQKVIEEAPAPNLPETL 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR----KVFWLEINV 264
              + + A  A QAIG  G    +F+ D  +       +++E+N 
Sbjct: 252 RAAMGQAAVRAAQAIGYHGAGTVEFIVDVGNGIENAPFYFMEMNT 296


>gi|146306390|ref|YP_001186855.1| biotin carboxylation domain-containing protein [Pseudomonas
           mendocina ymp]
 gi|145574591|gb|ABP84123.1| biotin carboxylation domain protein [Pseudomonas mendocina ymp]
          Length = 1231

 Score = 89.4 bits (221), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 36/234 (15%), Positives = 78/234 (33%), Gaps = 27/234 (11%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF---TMDSQHLISPPYVIKP 132
            I +         +   K  ++ +    GVP+     +       + +   +  P ++K 
Sbjct: 99  GIAFVGPTPEQLRVFGLKHTARALAKQHGVPMLEGTELLESIDAALAAGEAVGYPVMLKS 158

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQLLIEQYV-DGIELTCGVMGDASL 187
             GG  +G+ V +    +                   + IE+Y+     L   V GD   
Sbjct: 159 TAGGGGIGMRVCRSAAELSEAFEAVKRLGQNNFSDSGVFIEKYIQRARHLEVQVFGDGQG 218

Query: 188 DVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           +V  + V          K             +P  + + +   A    +A+  R     +
Sbjct: 219 EVLALGVRDCSVQRRNQKVL----EETPAPNLPAGMNEALCAAAIKLAKAVSYRSAGTVE 274

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR----ELLLWMVEDAS 297
           F++D  + + ++LE+N             +    G + +    +L+ WM+E A+
Sbjct: 275 FVYDSEAERFYFLEVNT-----------RLQVEHGVTEQVWGVDLVRWMIELAA 317


>gi|86149992|ref|ZP_01068220.1| acetyl-CoA carboxylase, biotin carboxylase [Campylobacter jejuni
           subsp. jejuni CF93-6]
 gi|205356306|ref|ZP_03223072.1| biotin carboxylase [Campylobacter jejuni subsp. jejuni CG8421]
 gi|85839438|gb|EAQ56699.1| acetyl-CoA carboxylase, biotin carboxylase [Campylobacter jejuni
           subsp. jejuni CF93-6]
 gi|205345911|gb|EDZ32548.1| biotin carboxylase [Campylobacter jejuni subsp. jejuni CG8421]
          Length = 443

 Score = 89.4 bits (221), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 42/215 (19%), Positives = 78/215 (36%), Gaps = 14/215 (6%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVN 114
           +G   E+     I     I +    + A  L  DK ++KQV+   GVPV P     +   
Sbjct: 83  YGFLSENQNFVEICAKHNIKFIGPSVEAMNLMSDKSKAKQVMQRAGVPVIPGSDGALAGA 142

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQLLIEQ 170
                    I  P ++K   GG   G+ V++ ++ +      + S          + +E+
Sbjct: 143 EAAKKLAKEIGYPVILKAAAGGGGRGMRVVENEKDLEKAYWSAESEAMTAFGDGTMYMEK 202

Query: 171 YV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           Y+ +   +   V+GD+  +V  +            K             +       +  
Sbjct: 203 YIQNPRHIEVQVIGDSFGNVIHVGERDCSMQRRHQK----LIEESPAILLDEKTRTRLHE 258

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            A  A +AIG  G    +FL D  +   +++E+N 
Sbjct: 259 TAVKAAKAIGYEGAGTFEFLVDK-NLDFYFIEMNT 292


>gi|297181037|gb|ADI17237.1| acetyl/propionyl-CoA carboxylase, alpha subunit [uncultured alpha
           proteobacterium HF0070_14E07]
          Length = 668

 Score = 89.4 bits (221), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 42/268 (15%), Positives = 101/268 (37%), Gaps = 31/268 (11%)

Query: 21  ACASALEDAGFKVSQIDVDRSVG---LVLAHLKPDLAFNV--------LHGNFG---EDG 66
           A  S ++  G  V   D   ++G      ++L+ D   +         +H  +G   E+ 
Sbjct: 30  AIYSDVDRDGLHVEACDEAVAIGGTSSADSYLEIDKVLSAAIETASDAIHPGYGFLSENP 89

Query: 67  LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM----DSQH 122
           +        +I +      A  +   K ++K+++ S GVP+ P        +       +
Sbjct: 90  VFAKECAAAKIIFVGPPATAIEVMGSKSKAKKLMESAGVPLVPGYHGEEQEVSYLSQKAN 149

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGDQLLIEQYV-DGIEL 177
            I  P ++K   GG   G+ +++    +   +     ++ +    D L++E+++ +   +
Sbjct: 150 EIGFPVLVKASAGGGGRGMRIVESLDDLETAVNSSKREAKAAFSDDHLMLEKFITEPRHI 209

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQ 236
              +  D   ++              ++          PA  + ++  K++   A  A +
Sbjct: 210 EVQIFADEKGNIV-----HLFERDCSVQRRYQKVIEEAPAPNLSIETRKKLFDAALAAVR 264

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINV 264
           AI   G    +F+ D    + +++E+N 
Sbjct: 265 AINYVGAGTIEFIADA--NQFYFIEMNT 290


>gi|16519926|ref|NP_444046.1| conserved putative dicarboxylase [Sinorhizobium fredii NGR234]
 gi|2493314|sp|P55641|Y4RH_RHISN RecName: Full=Uncharacterized protein y4rH
 gi|2182606|gb|AAB91833.1| conserved putative dicarboxylase [Sinorhizobium fredii NGR234]
          Length = 478

 Score = 89.4 bits (221), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 43/257 (16%), Positives = 89/257 (34%), Gaps = 28/257 (10%)

Query: 21  ACASALEDAGFKVSQIDVDRSVGLVLAHLK----PDL--AFNVLHGNFGEDGLVQAILEL 74
           A    +     +V+++D      L+  + +     D+    +     +   G +      
Sbjct: 97  ALYDYVAAERIEVARVDTTNLDALIGEYSRLGKSFDIAGVTSAAESFYATVGKI---CRN 153

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--QHLISPPYVIKP 132
             +P       +     +K   +QV+++ GVPV                  I  P V+KP
Sbjct: 154 FNLP--GPDPESIEQCCNKAAQRQVLAAAGVPVPGYRSATTAAEVQCVAAEIGLPAVLKP 211

Query: 133 LKGGSSLGIIVIKKDQSIPL--DLLQSSS--WNHGDQLLIEQYVDGIELTCGVMGDASLD 188
             G  S G+ + +  + +    D L      W    ++L+EQ+VDG      +MGD  + 
Sbjct: 212 AVGSGSRGVRLCRDARELAEHTDYLLGGKHMWRSSPEVLVEQFVDGPHYIAEIMGDEVIG 271

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR-GISRSD 247
           +          + +             PA +  + Y+    +     +A+G   G +  +
Sbjct: 272 IGITEYGPPPHFVFR--------QLTFPAPLTDEQYERAVDVVQRCLRALGLGWGPTNIE 323

Query: 248 FLFDPLSRKVFWLEINV 264
           F +  +      +E+N 
Sbjct: 324 FRWTEVG--PVVIEVNP 338


>gi|283956684|ref|ZP_06374163.1| acetyl-CoA carboxylase, biotin carboxylase [Campylobacter jejuni
           subsp. jejuni 1336]
 gi|283791933|gb|EFC30723.1| acetyl-CoA carboxylase, biotin carboxylase [Campylobacter jejuni
           subsp. jejuni 1336]
          Length = 443

 Score = 89.4 bits (221), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 42/215 (19%), Positives = 78/215 (36%), Gaps = 14/215 (6%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVN 114
           +G   E+     I     I +    + A  L  DK ++KQV+   GVPV P     +   
Sbjct: 83  YGFLSENQNFVEICAKHNIKFIGPSVEAMNLMSDKSKAKQVMQRAGVPVIPGSDGALAGA 142

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQLLIEQ 170
                    I  P ++K   GG   G+ V++ ++ +      + S          + +E+
Sbjct: 143 EAAKKLAKEIGYPVILKAAAGGGGRGMRVVENEKDLEKAYWSAESEAMTAFGDGTMYMEK 202

Query: 171 YV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           Y+ +   +   V+GD+  +V  +            K             +       +  
Sbjct: 203 YIQNPRHIEVQVIGDSFGNVIHVGERDCSMQRRHQK----LIEESPAILLDEKTRTRLHE 258

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            A  A +AIG  G    +FL D  +   +++E+N 
Sbjct: 259 TAIKAAKAIGYEGAGTFEFLVDK-NLDFYFIEMNT 292


>gi|118591275|ref|ZP_01548673.1| pyruvate carboxylase [Stappia aggregata IAM 12614]
 gi|118435947|gb|EAV42590.1| pyruvate carboxylase [Stappia aggregata IAM 12614]
          Length = 1146

 Score = 89.4 bits (221), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 75/221 (33%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E        E   I +            +K+ ++ +    GVPV P+   
Sbjct: 79  AIHPGYGLLSESPEFVDACEEAGITFIGPKSETMRRLGNKVAARNLAIEAGVPVMPATDP 138

Query: 114 NRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQ----SIPLDLLQSSSWNHGDQ 165
               MD        I  P ++K   GG   G+ VI  +      +     ++ +    D+
Sbjct: 139 LPDDMDEIKRQAAEIGYPVMLKASWGGGGRGMRVIPDEATLSKEVVAAKREAKAAFGKDE 198

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           + +E+ V     +   ++GD         V         ++          PA  +    
Sbjct: 199 IYLEKLVQRARHVEVQILGDGE------NVVHLFERDCSIQRRHQKVVERAPAPYLSAKK 252

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             E+        +A+  RG    +FL D  +  ++++E+N 
Sbjct: 253 RAELCEYGLKIGRAVNYRGAGTVEFLMDADTGDIYFIEVNP 293


>gi|153951320|ref|YP_001397623.1| biotin carboxylase [Campylobacter jejuni subsp. doylei 269.97]
 gi|152938766|gb|ABS43507.1| acetyl-CoA carboxylase, biotin carboxylase [Campylobacter jejuni
           subsp. doylei 269.97]
          Length = 443

 Score = 89.4 bits (221), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 42/215 (19%), Positives = 78/215 (36%), Gaps = 14/215 (6%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVN 114
           +G   E+     I     I +    + A  L  DK ++KQV+   GVPV P     +   
Sbjct: 83  YGFLSENQNFVEICAKHNIKFIGPSVEAMNLMSDKSKAKQVMQRAGVPVIPGSDGALAGA 142

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQLLIEQ 170
                    I  P ++K   GG   G+ V++ ++ +      + S          + +E+
Sbjct: 143 EAAKKLAKEIGYPVILKAAAGGGGRGMRVVENEKDLEKAYWSAESEAMTAFGDGTMYMEK 202

Query: 171 YV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           Y+ +   +   V+GD+  +V  +            K             +       +  
Sbjct: 203 YIQNPRHIEVQVIGDSFGNVIHVGERDCSMQRRHQK----LIEESPAILLDEKTRTRLHE 258

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            A  A +AIG  G    +FL D  +   +++E+N 
Sbjct: 259 TAIKAAKAIGYEGAGTFEFLVDK-NLDFYFIEMNT 292


>gi|315638017|ref|ZP_07893202.1| acetyl-CoA carboxylase, biotin carboxylase [Campylobacter
           upsaliensis JV21]
 gi|315481865|gb|EFU72484.1| acetyl-CoA carboxylase, biotin carboxylase [Campylobacter
           upsaliensis JV21]
          Length = 443

 Score = 89.4 bits (221), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 42/215 (19%), Positives = 78/215 (36%), Gaps = 14/215 (6%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVN 114
           +G   E+     I     + +    + A  L  DK ++KQV+   GVPV P     +   
Sbjct: 83  YGFLSENQNFVEICAKHNLKFIGPSVEAMNLMSDKSKAKQVMQRAGVPVIPGSDGALAGA 142

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQLLIEQ 170
                    I  P ++K   GG   G+ V++ ++ +      + S          + +E+
Sbjct: 143 EAAKKLAKEIGYPVILKAAAGGGGRGMRVVENEKDLEKAYWSAESEAMTAFGDGTMYMEK 202

Query: 171 YV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           Y+ +   +   V+GD+  +V  I            K             +       +  
Sbjct: 203 YIQNPRHIEVQVVGDSFGNVIHIGERDCSMQRRHQK----LIEESPAILLDEKTRARLHE 258

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            A  A +AIG  G    +FL D  +   +++E+N 
Sbjct: 259 TAVKAAKAIGYEGAGTFEFLVDK-NLDFYFIEMNT 292


>gi|226953227|ref|ZP_03823691.1| urea carboxylase [Acinetobacter sp. ATCC 27244]
 gi|226836017|gb|EEH68400.1| urea carboxylase [Acinetobacter sp. ATCC 27244]
          Length = 1201

 Score = 89.4 bits (221), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 40/258 (15%), Positives = 90/258 (34%), Gaps = 32/258 (12%)

Query: 56  NVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
           N +H  +G   E+     + E   I +             K  ++++     VP+ P   
Sbjct: 76  NAIHPGYGFLSENAEFCDLCESQGIAFIGPNSAQMRAFGLKHTARELAIEANVPLLPGSQ 135

Query: 113 VNRFTMDS---QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
           +     ++      I  P ++K   GG  +G+ ++   + +          + +      
Sbjct: 136 LLADEAEALVEAERIGYPVMLKSTAGGGGIGMRLVWNAEELKDAFTTVSYLAQANFKDAG 195

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           L +E++V +   +   + GD    V  +           ++  +       PA  +    
Sbjct: 196 LYLEKFVQNARHIEVQIFGDGQGQVLALGE-----RDCSVQRRNQKVIEETPAPHLNDQQ 250

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283
              +Q +A    Q++  R     +F+ D  ++  ++LE+N             +    G 
Sbjct: 251 RSYIQTVAIQLMQSVNYRSAGTVEFVMDTDTQDFYFLEVNT-----------RLQVEHGV 299

Query: 284 S---FR-ELLLWMVEDAS 297
           +   +  +L+ WMV  AS
Sbjct: 300 TEQVYGVDLVEWMVTLAS 317


>gi|297623352|ref|YP_003704786.1| acetyl-CoA carboxylase, biotin carboxylase [Truepera radiovictrix
           DSM 17093]
 gi|297164532|gb|ADI14243.1| acetyl-CoA carboxylase, biotin carboxylase [Truepera radiovictrix
           DSM 17093]
          Length = 445

 Score = 89.4 bits (221), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 35/219 (15%), Positives = 75/219 (34%), Gaps = 17/219 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+       E   I +            DK  +++V     VPV P    
Sbjct: 77  AIHPGYGFLSENAEFAQKCEEHGITFIGPRPENIRAIGDKASARRVAQESDVPVVPGSGA 136

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQL 166
           +            I  P ++K   GG   G+ +++ ++ +  +L     ++ +     ++
Sbjct: 137 LASLDEAKAFAAKIGYPVILKASAGGGGRGMRIVRSEEELARNLANAQEEARAAFGNGEM 196

Query: 167 LIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
            +E++++    +   V GD    V              ++          P+ +   +  
Sbjct: 197 YMEKFLEEPRHVEIQVFGDGEGHVM-----HFFDRDCSIQRRYQKVLEEAPSTLDTALRL 251

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           E+   A    + I  RG    +FL D      ++ E+N 
Sbjct: 252 EIAEAAVRLARHINYRGAGTCEFLVD-RDGSFYFSEMNT 289


>gi|123967609|ref|YP_001008467.1| acetyl-CoA carboxylase biotin carboxylase subunit [Prochlorococcus
           marinus str. AS9601]
 gi|123197719|gb|ABM69360.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Prochlorococcus
           marinus str. AS9601]
          Length = 449

 Score = 89.4 bits (221), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 43/220 (19%), Positives = 85/220 (38%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---S 110
            +H  +G   E+     +     I +      A     DK  +K+ + + GVP  P    
Sbjct: 77  AIHPGYGFLAENDKFAEMCNDHGIVFIGPSPKAIRSMGDKSTAKETMEAVGVPTVPGSKG 136

Query: 111 ILVN-RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSWNHGDQ 165
           +L N          I  P +IK   GG   G+ +++   ++         ++ +    D 
Sbjct: 137 LLSNVDEAYKLADDIGYPVIIKATAGGGGRGMRLVENSNNLEKMFKAAQGEAEAAFGNDG 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           L +E+++     +   ++ D S +V  +        S + ++  L      PA I   + 
Sbjct: 197 LYMEKFIKKPRHVEIQILADRSGNVVHLGERD---CSVQRRHQKLLEESPSPA-INPALR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K++   A  A ++IG  G    +FL D      +++E+N 
Sbjct: 253 KKMGNAAIAAAKSIGYEGAGTVEFLVDDDDN-FYFMEMNT 291


>gi|309807411|ref|ZP_07701374.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus iners
           LactinV 01V1-a]
 gi|308169333|gb|EFO71388.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus iners
           LactinV 01V1-a]
          Length = 1055

 Score = 89.4 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 46/297 (15%), Positives = 106/297 (35%), Gaps = 38/297 (12%)

Query: 22  CASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ--- 69
           C  AL+  G+K   I         D   S  L    +  +   N++     E  ++Q   
Sbjct: 577 CVKALQKLGYKAIVINSNPETVSTDFSISDKLYFEPITLEDVLNIVDIEKPEGVIIQFGA 636

Query: 70  -------AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL--VNRFTMDS 120
                  A L+   +    + +     + D+    QV+ + G+     +     +  +D+
Sbjct: 637 QTAINLAAGLKEHGVKILGTDVEDINRAEDREEFDQVIKNLGLKQPKGLTSTTRQGVIDA 696

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +++P        + ++  +  +   L  ++   +   +L++ Y+DG E    
Sbjct: 697 AIKIGYPVLVRPSYVLGGKAMEIVYNEAELGEYLDNNAYITNDHPILVDDYLDGKECDVD 756

Query: 181 VMGDAS---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQ 236
            + D     +      V  +  +S        +S  + P +    DI +++  +      
Sbjct: 757 AISDGVDILIPGIMEHVEHAGVHS-------GDSMAIYPPQSFSDDIQQKICEVTRKLAI 809

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           A+ C+GI    F+       V+ +E+N +   T     P ++   G    ++   ++
Sbjct: 810 ALKCQGIMNIQFIVR--DNDVYVIEVNPRASRT----VPFLSKITGIEMVQVATKII 860



 Score = 73.2 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 50/323 (15%), Positives = 108/323 (33%), Gaps = 48/323 (14%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI---------DVD------------RSVGLV 45
           G ++E + S   G     AL + G++V  +         D +             ++  +
Sbjct: 21  GQAAEFDYS---GTQACLALREEGYEVILVNSNPATIMTDTEIADKVYLEPLTVEALTRI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +    PD     L G  G +  +      IL+ L I    + + +   + D+   K++  
Sbjct: 78  IYQEYPDAILPTLGGQNGLNMALALSKTGILDKLNIELLGTKLKSIEQAEDREEFKKLCK 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G PV PS+ V+     +     I  P +++P       G  +    + +   + +   
Sbjct: 138 QLGEPVPPSLTVHNAEDALAFAEKIGYPIIVRPAFTMGGTGGGICNNRKELATVVARGLD 197

Query: 160 WNHGDQLLIEQYVDG---IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216
            +   + LIE+ + G   IE         +  +            +     + +S    P
Sbjct: 198 LSPVTECLIEKSIAGYKEIEFEVMRDCTDNCMIVCCMENFDPVGIH-----TGDSIVFSP 252

Query: 217 AK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV-------QPGM 268
           ++ +    Y+ ++  +    +A+   G        +P S     +E+N            
Sbjct: 253 SQTLSDKEYQMLRDCSLNLIRALKIEGGCNVQLALNPNSFDYDVIEVNPRVSRSSALASK 312

Query: 269 TPVSIFPEMAA--YAGYSFRELL 289
                  +MAA    G +  E++
Sbjct: 313 ATGYPIAKMAAKIAVGMTLDEII 335


>gi|255099179|ref|ZP_05328156.1| pyruvate carboxylase [Clostridium difficile QCD-63q42]
          Length = 1143

 Score = 89.4 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 42/243 (17%), Positives = 89/243 (36%), Gaps = 24/243 (9%)

Query: 35  QIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSM 91
            +D+D  +  +    K D     +H  +G   E+       E   I +         +  
Sbjct: 64  YLDMD-GIIDLAKRKKVD----AIHPGYGFLAENAEFARKCEENGITFIGPSSKVMNMMG 118

Query: 92  DKMRSKQVVSSCGVPVCPSILV----NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147
           DK+ SK++     V   P +           +  + I  P +IK   GG   G+ ++ ++
Sbjct: 119 DKINSKKIAKEVNVQTIPGVEKAIRSTEEAKEVANKIGYPVMIKASNGGGGRGMRIVHRE 178

Query: 148 QSIPLDLLQSSSWNHG----DQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSY 202
           + + L+   + S +      D + IE+Y+ D   +   ++GD   ++  +          
Sbjct: 179 EDLELEYETACSESRKAFGEDIIFIEKYIADPKHIEVQILGDNYGNIVHLYE-----RDC 233

Query: 203 ELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
            ++          PA  +   + KE+   A    + +G       +FL D      +++E
Sbjct: 234 SVQRRHQKIIEYAPAFSLEDKVRKEICEDAVKLSKHVGYSNAGTLEFLVDANGGH-YFIE 292

Query: 262 INV 264
           +N 
Sbjct: 293 MNT 295


>gi|193873084|gb|ACF23232.1| D-alanine-D-alanine ligase [Streptococcus mitis]
          Length = 96

 Score = 89.4 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 30/96 (31%), Positives = 50/96 (52%), Gaps = 2/96 (2%)

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD--VTEIAVPKSDFYSYELKYSSLNST 212
               ++ +  ++L+EQ V+  E+  G++G+  +   +    V   DFY Y+ KY     T
Sbjct: 1   ALKLAFQYDSRVLVEQGVNAREIEVGLLGNYDVKSALPGEVVKDVDFYDYDAKYIDNKIT 60

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
             +PAKI  D    +++ A  A +AIG  G+SR DF
Sbjct: 61  MDIPAKISDDEVAVMRQNAETAFRAIGGLGLSRCDF 96


>gi|260803106|ref|XP_002596432.1| hypothetical protein BRAFLDRAFT_279690 [Branchiostoma floridae]
 gi|229281688|gb|EEN52444.1| hypothetical protein BRAFLDRAFT_279690 [Branchiostoma floridae]
          Length = 1142

 Score = 89.4 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 33/204 (16%), Positives = 80/204 (39%), Gaps = 14/204 (6%)

Query: 69  QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI---- 124
           QA+++   I +            DK+ ++Q+  + GV V P       T++         
Sbjct: 89  QAVVD-AGIRFVGPAPEIVRKMGDKVEARQIAIAAGVQVVPGTDGPVSTLEEAQQFCSEH 147

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGDQLLIEQYVD-GIELTC 179
             P ++K   GG   G+ +++  + +         ++ +      L IE++++    +  
Sbjct: 148 GFPIILKAAFGGGGRGMRIVRNKEELNENFQRATSEALAAFGNGSLFIEKFIEKPRHIEV 207

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
            ++GD + +V  +        S + +Y  +   +    ++   I + +   A    + +G
Sbjct: 208 QILGDKAGNVVHLFERD---CSVQRRYQKV-VEYAPAPELDPVIREGILADAVKLAKFVG 263

Query: 240 CRGISRSDFLFDPLSRKVFWLEIN 263
                  +FL D    K +++E+N
Sbjct: 264 YENAGTVEFLLDQEQGKFYFIEVN 287


>gi|193873040|gb|ACF23210.1| D-alanine-D-alanine ligase [Streptococcus infantis]
          Length = 96

 Score = 89.4 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 31/96 (32%), Positives = 50/96 (52%), Gaps = 2/96 (2%)

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNST 212
               ++ +  ++L+EQ V+  E+  G++G+  +  T     V    FY YE KY     T
Sbjct: 1   ALELAFKYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDYEAKYIDNKIT 60

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
             +PAKI  ++   ++R A  A +AIG  G+SR DF
Sbjct: 61  MDIPAKISDNVVAVMRRNAEAAFRAIGGLGLSRCDF 96


>gi|193873004|gb|ACF23192.1| D-alanine-D-alanine ligase [Streptococcus mitis]
          Length = 96

 Score = 89.4 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 30/96 (31%), Positives = 49/96 (51%), Gaps = 2/96 (2%)

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNST 212
               ++ +  ++L+EQ V+  E+  G++G+     T     V    FY Y+ KY     T
Sbjct: 1   ALKLAFQYDSRVLVEQGVNAREIEVGLLGNYDAKSTLPGEVVKDVAFYDYDAKYIDNKIT 60

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
             +PAKI  D+   +++ A  A +AIG  G+SR DF
Sbjct: 61  MDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDF 96


>gi|83648646|ref|YP_437081.1| acetyl-CoA carboxylase, biotin carboxylase [Hahella chejuensis KCTC
           2396]
 gi|83636689|gb|ABC32656.1| acetyl-CoA carboxylase, biotin carboxylase [Hahella chejuensis KCTC
           2396]
          Length = 446

 Score = 89.4 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 37/217 (17%), Positives = 77/217 (35%), Gaps = 18/217 (8%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVN 114
           +G   E+      +E     +         L  +K+ + Q +   GVP  P     I  +
Sbjct: 82  YGFLAENADFAEQVEKSGFVFIGPKPDTIRLMGNKVSAIQAMRKAGVPTVPGSDGPITED 141

Query: 115 RF-TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQLLIE 169
           +  T++    I  P +IK   GG   G+ V+  + ++   +     ++ +      + +E
Sbjct: 142 KERTLEVARKIGYPVIIKAASGGGGRGMQVVNSEAALLNAIQLTQSEAKAAFGDPTVYLE 201

Query: 170 QYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEV 227
           +++D    +   V+ D   +V              L+          PA  +  +     
Sbjct: 202 KFLDRPRHIEVQVLADGQGNVI-----HLGDRDCSLQRRHQKVLEEAPAPDVDPEARAAT 256

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
                 A   IG RG    +FL+     + +++E+N 
Sbjct: 257 LNSCVQACLDIGYRGAGTFEFLY--QDGRFYFIEMNT 291


>gi|302526216|ref|ZP_07278558.1| acetyl/propionyl-CoA carboxylase alpha subunit [Streptomyces sp.
           AA4]
 gi|302435111|gb|EFL06927.1| acetyl/propionyl-CoA carboxylase alpha subunit [Streptomyces sp.
           AA4]
          Length = 1849

 Score = 89.4 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 48/236 (20%), Positives = 85/236 (36%), Gaps = 23/236 (9%)

Query: 42  VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   L   K D A+ V  G   ED     + E + + +      A     DK+ +K +  
Sbjct: 100 LEKALVETKADAAW-VGWGFVAEDPAFAELCEKIGVAFVGPSADAMRKLGDKIGAKLIAE 158

Query: 102 SCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL-- 155
             GVPV P     +      + +   I  P ++K   GG   GI  ++    +       
Sbjct: 159 EVGVPVAPWSGGEVATLEEALAAGDKIGYPLMLKATAGGGGRGIRKVESAGDLTEAYERT 218

Query: 156 --QSSSWNHGDQLLIEQYVDG-IELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSS 208
             ++        + +E+ V G   +   V+ D     +L V + +V + +    E     
Sbjct: 219 SQEALRAFGSGVVFLERLVTGARHVEVQVISDGETAWALGVRDCSVQRRNQKIIE----- 273

Query: 209 LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
                     +  D   E++  A     A+G RG    +FL+ P  R   +LE+N 
Sbjct: 274 ----ESASPVLGADQTAELKASAERLAVAVGYRGACTVEFLYHPGDRMFAFLEVNT 325


>gi|260892280|ref|YP_003238377.1| carbamoyl-phosphate synthase, large subunit [Ammonifex degensii
           KC4]
 gi|260864421|gb|ACX51527.1| carbamoyl-phosphate synthase, large subunit [Ammonifex degensii
           KC4]
          Length = 1075

 Score = 89.4 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 60/288 (20%), Positives = 112/288 (38%), Gaps = 37/288 (12%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI---------DVD------------RSVGLV 45
           G ++E + S   G     AL + G +V  +         D +              V  V
Sbjct: 21  GQAAEFDYS---GTQACRALREEGLEVVLVNSNPATIMTDPNMADRVYIEPLTPEFVAKV 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           L   +PD     L G  G +  V+     +L+ L +    + +     + D+   K+ + 
Sbjct: 78  LRKERPDGLLPTLGGQVGLNLAVELSRMGVLDELGVELLGTPLETIEKAEDRELFKETMR 137

Query: 102 SCGVPVCPSILVNRFTMD--SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
           + G P+  S +V+R          I  P V++P       G  + + ++ +     +   
Sbjct: 138 AIGEPIPESRIVSRLEDAVSFAREIGFPVVVRPAYTLGGTGGGIARNEEELLEIAARGLK 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
            +   Q+L+EQ V G  E+   VM D + + +T   +   D           +S  V P+
Sbjct: 198 HSLIGQILVEQCVSGWKEIEFEVMRDGADNCITVCCMENLDPMGIHT----GDSIVVAPS 253

Query: 218 K-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +    Y+ ++R A    +A+G RG     F  DP S + + +E+N 
Sbjct: 254 QTLTDKEYQMLRRAAIKIIRALGIRGGCNIQFALDPRSLRYYVIEVNP 301



 Score = 77.1 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 44/283 (15%), Positives = 101/283 (35%), Gaps = 38/283 (13%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ------ 69
           AL + G K   I         D D +  L    L  +   NVL     E  LVQ      
Sbjct: 582 ALREEGIKAIIINNNPETVSTDFDTADRLYFEPLVAEDVLNVLEKEKPEGVLVQFGGQTA 641

Query: 70  ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTMDSQHL 123
                 L         + +     + D+ +  +V+ +  +P  P          +     
Sbjct: 642 INLAKPLAAAGFKILGTAVEDIDRAEDREKFDRVLEAENIPRPPGGAAKSPEEALAVAER 701

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           +  P +++P        + ++   + +   +  ++  +    +L+++Y+ G E+    + 
Sbjct: 702 VGFPVLVRPSYVLGGRAMEIVYNREELEEYMRFAARVSPEYPVLVDKYIFGKEVEVDAIS 761

Query: 184 DAS---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIG 239
           D     +      + ++  +S        +S  V P + +  ++ ++V        +A+ 
Sbjct: 762 DGEDVLIPGIMEHIERAGIHS-------GDSIAVYPPRTLNGEVVEQVVSYTTALARALR 814

Query: 240 CRGISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277
            RG+    ++ D    KV+ LE+N       P ++ ++  P +
Sbjct: 815 VRGLLNIQYVVDA-EGKVYVLEVNPRASRTVPYLSKITGIPMI 856


>gi|300693172|ref|YP_003749145.1| hypothetical protein RPSI07_mp0137 [Ralstonia solanacearum PSI07]
 gi|299075209|emb|CBJ34496.1| conserved hypothethical protein [Ralstonia solanacearum PSI07]
          Length = 388

 Score = 89.4 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 56/247 (22%), Positives = 97/247 (39%), Gaps = 44/247 (17%)

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRF-------------TMDSQHLISPPYVIKPLKGG 136
           + DK  +   +   G+PV  S LV R                  +  ++ P V+KP++G 
Sbjct: 137 ADDKYATNAHLRRHGLPVAASSLVGREACGSLPPLEALREDDLQRAGLAFPLVVKPVRGR 196

Query: 137 SSLGIIVIKK---DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS-LDVTE- 191
            S G+ +++     Q     LL SS++  GD L+ E ++ G ELT  VM   + L     
Sbjct: 197 GSEGVTLVRDLPSMQRAAAGLLDSSAF--GDALIAETFLAGEELTVTVMPRQADLPAAFS 254

Query: 192 -------IAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-----IYKEVQRLAFLAHQAIG 239
                    V + +       Y+   +       + ++       + + R   LA+  +G
Sbjct: 255 SETASALPPVRRFNHVDGVAPYNGAVAVTRNSVALSVEASMAPEARALVRACLLAYDVVG 314

Query: 240 CRGISRSDFLFDPLSRKVF-WLEINVQPGMT---------PVSIFPEMAAYAGYSFRELL 289
            R   R D   D     V+   ++N++P MT           S+    A   G+ +RELL
Sbjct: 315 ARAPIRIDCRADARG--VYQLFDLNMKPNMTGAGRPGREDQDSLSALAARAVGWDYRELL 372

Query: 290 LWMVEDA 296
           + M+  A
Sbjct: 373 VRMMGAA 379


>gi|254519768|ref|ZP_05131824.1| biotin carboxylase [Clostridium sp. 7_2_43FAA]
 gi|226913517|gb|EEH98718.1| biotin carboxylase [Clostridium sp. 7_2_43FAA]
          Length = 447

 Score = 89.4 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 85/221 (38%), Gaps = 17/221 (7%)

Query: 56  NVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
           N +H  FG   E+    +I E   I +        ++  DK R+++++ +  VPV P   
Sbjct: 76  NAIHPGFGFLSENAEFASICEECNIKFIGPSSKTISIMGDKARAREIMKNADVPVIPGSN 135

Query: 111 --ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GD 164
             +            I  P +IK   GG   GI ++ K+  +      + S        D
Sbjct: 136 GIVKSIEEAYIEAKEIGYPVMIKAALGGGGKGIRIVHKEDELENAYFTAKSEAKVNFGDD 195

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            + IE++++    +   ++GD   ++  +            K      + +    +  D+
Sbjct: 196 TIYIEKFIENPRHIEFQILGDEHGNIIHLGERDCTIQRRNQKVLEEAPSSI----LSDDL 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             E+ R A  A +A+        +FL D  S   +++E+N 
Sbjct: 252 RIEMGRAAINAAKAVNYFNAGTIEFLVDKYSN-FYFMEMNT 291


>gi|50082941|gb|AAT70092.1| D-alanyl-D-alanine ligase [Rhodococcus globerulus]
          Length = 126

 Score = 89.4 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 31/129 (24%), Positives = 58/129 (44%), Gaps = 10/129 (7%)

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVP 195
           G+  + + + +   +    +     ++LI + V G E+ C ++G+     S +V  +A+ 
Sbjct: 1   GVSKVSQKEELLPAVEI--ARQSDSKVLIGEAVVGSEVGCSILGNELDLISGEVDRVALS 58

Query: 196 KSDFYSYELK---YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
              F  ++ K     S NST ++PA I  +    VQ  A   ++A+GC G++R D     
Sbjct: 59  HGFFKIHQEKDPESGSENSTFIVPADISEESRSLVQETAKTIYRALGCSGLARVDMFL-K 117

Query: 253 LSRKVFWLE 261
               V   E
Sbjct: 118 EDGSVVLNE 126


>gi|78188337|ref|YP_378675.1| Acetyl-CoA carboxylase, biotin carboxylase [Chlorobium
           chlorochromatii CaD3]
 gi|78170536|gb|ABB27632.1| Acetyl-CoA carboxylase, biotin carboxylase [Chlorobium
           chlorochromatii CaD3]
          Length = 447

 Score = 89.4 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 77/220 (35%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     +     I +            DK  +K  + + GVPV P    
Sbjct: 77  AIHPGYGFLAENADFAEVCASANIKFIGPTAAMINSMGDKNTAKATMIAAGVPVVPGSPG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGDQ 165
            +   +  +     I  P +IKP  GG   G+ V+ +D  +   L     ++        
Sbjct: 137 LVTDAKDALAIAKKIGYPIIIKPTAGGGGKGMRVVTEDSQLEKALSTARSEAEQAFGNSG 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+Y++    +   ++ D   +   +            K             +   + 
Sbjct: 197 VYIEKYLENPRHVEIQILSDQHGNTIHLGERDCTVQRRHQK----LIEETPSPAVDEALR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +++   A  A +AI   G    +FL D   R  +++E+N 
Sbjct: 253 EKMGTAAVAAARAINYEGAGTIEFLLDKH-RNFYFMEMNT 291


>gi|302190954|ref|ZP_07267208.1| carbamoyl phosphate synthase large subunit [Lactobacillus iners
           AB-1]
          Length = 1055

 Score = 89.4 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 47/297 (15%), Positives = 105/297 (35%), Gaps = 38/297 (12%)

Query: 22  CASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ--- 69
           C  AL+  G+K   I         D   S  L    +  +   N++     E  ++Q   
Sbjct: 577 CVKALQKLGYKAIVINSNPETVSTDFSISDKLYFEPITLEDVLNIVDIEKPEGVIIQFGA 636

Query: 70  -------AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDS 120
                  A L+   +    + +     + D+    QV+ + G+     +        +D+
Sbjct: 637 QTAINLAAGLKEHGVKILGTDVEDINRAEDREEFDQVIKNLGLKQPKGLTATTRQGVIDA 696

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +++P        + ++  +  +   L  ++   +   +L++ Y+DG E    
Sbjct: 697 AIKIGYPVLVRPSYVLGGKAMEIVYNEAELEEYLDNNAYITNDHPILVDDYLDGKECDVD 756

Query: 181 VMGDAS---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQ 236
            + D     +      V  +  +S        +S  V P +    DI +++  +      
Sbjct: 757 AISDGVDILIPGIMEHVEHAGVHS-------GDSMAVYPPQSFLDDIQQKICEVTRKLAI 809

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           A+ C+GI    F+       V+ +E+N +   T     P ++   G    ++   ++
Sbjct: 810 ALKCQGIMNIQFIVR--DNDVYVIEVNPRASRT----VPFLSKITGIEMVQVATKII 860



 Score = 72.5 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 49/323 (15%), Positives = 107/323 (33%), Gaps = 48/323 (14%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI---------DVD------------RSVGLV 45
           G ++E + S   G     AL + G++V  +         D +             ++  +
Sbjct: 21  GQAAEFDYS---GTQACLALREEGYEVILVNSNPATIMTDTEIADKVYLEPLTVEALTRI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +    PD     L G  G +  +      IL+ L I    + + +   + D+   K++  
Sbjct: 78  IYQEYPDAILPTLGGQNGLNMALALSKTGILDKLNIELLGTKLKSIEQAEDREEFKKLCK 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G PV PS+ V+     +     I  P +++P       G  +    + +   + +   
Sbjct: 138 QLGEPVPPSLTVHNAEDALAFAEKIGYPIIVRPAFTMGGTGGGICNNRKELATVVARGLD 197

Query: 160 WNHGDQLLIEQYVDG---IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216
            +   + LIE+ + G   IE         +  +            +     + +S    P
Sbjct: 198 LSPVTECLIEKSIAGYKEIEFEVMRDCTDNCMIVCCMENFDPVGIH-----TGDSIVFSP 252

Query: 217 AK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV-------QPGM 268
           ++ +    Y+ ++  +    +A+   G        +  S     +E+N            
Sbjct: 253 SQTLSDKEYQMLRDCSLNLIRALKIEGGCNVQLALNTNSFDYDVIEVNPRVSRSSALASK 312

Query: 269 TPVSIFPEMAA--YAGYSFRELL 289
                  +MAA    G +  E++
Sbjct: 313 ATGYPIAKMAAKIAVGMTLDEII 335


>gi|193872892|gb|ACF23136.1| D-alanine-D-alanine ligase [Streptococcus mitis]
          Length = 96

 Score = 89.4 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 48/96 (50%), Gaps = 2/96 (2%)

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNST 212
               ++ +  ++L+EQ V   E+  G++G+  +  T     V    FY Y+ KY     T
Sbjct: 1   ALKLAFQYDSRVLVEQGVIAREIEVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKIT 60

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
             +PA I  D+   +++ A  A +AIG  G+SR DF
Sbjct: 61  MDIPANISDDVIAVMRQNAETAFRAIGGLGLSRCDF 96


>gi|325523057|gb|EGD01470.1| pyruvate carboxylase [Burkholderia sp. TJI49]
          Length = 1172

 Score = 89.4 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 43/246 (17%), Positives = 94/246 (38%), Gaps = 25/246 (10%)

Query: 33  VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLV-QAILELLEIPYTHSGILASA 88
            + +D+D  +  V    + D     +H  +G   E+    QA+++   I +         
Sbjct: 66  AAYLDID-DILRVARQARVD----AIHPGYGFLSENPDFAQAVID-AGIRWIGPSPDVMR 119

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSLGIIVI 144
              +K+ ++    + GVPV P+       +D+       +  P ++K   GG   G+ V+
Sbjct: 120 TLGNKVAARNAAIAAGVPVMPATAPLPDDLDACKALAAEVGYPLMLKASWGGGGRGMRVL 179

Query: 145 KKDQSI----PLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDF 199
           +  Q +    P+   ++ +    D++ +E+ V     +   V+GD    V          
Sbjct: 180 ENAQDLETLLPVARREALAAFGNDEVYVEKLVRNARHVEVQVLGDMHGTVV-----HLHE 234

Query: 200 YSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
               ++  +       PA  +  D    +   A    +A+G       +FL D  + + +
Sbjct: 235 RDCTVQRRNQKVVERAPAPYLDRDGRHALCEAALRLMRAVGYTHAGTVEFLMDADTNQFY 294

Query: 259 WLEINV 264
           ++E+N 
Sbjct: 295 FIEVNP 300


>gi|312872851|ref|ZP_07732913.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus iners
           LEAF 2062A-h1]
 gi|311091585|gb|EFQ49967.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus iners
           LEAF 2062A-h1]
          Length = 1055

 Score = 89.4 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 47/297 (15%), Positives = 105/297 (35%), Gaps = 38/297 (12%)

Query: 22  CASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ--- 69
           C  AL+  G+K   I         D   S  L    +  +   N++     E  ++Q   
Sbjct: 577 CVKALQKLGYKAIVINSNPETVSTDFSISDKLYFEPITLEDVLNIVDIEKPEGVIIQFGA 636

Query: 70  -------AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDS 120
                  A L+   +    + +     + D+    QV+ + G+     +        +D+
Sbjct: 637 QTAINLAAGLKEHGVKILGTDVEDINRAEDREEFDQVIKNLGLKQPKGLTATTRQGVIDA 696

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +++P        + ++  +  +   L  ++   +   +L++ Y+DG E    
Sbjct: 697 AIKIGYPVLVRPSYVLGGKAMEIVYNEAELEEYLDNNAYITNDHPILVDDYLDGKECDVD 756

Query: 181 VMGDAS---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQ 236
            + D     +      V  +  +S        +S  V P +    DI +++  +      
Sbjct: 757 AISDGVDILIPGIMEHVEHAGVHS-------GDSMAVYPPQSFLDDIQQKICEVTRKLAI 809

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           A+ C+GI    F+       V+ +E+N +   T     P ++   G    ++   ++
Sbjct: 810 ALKCQGIMNIQFIVR--DNDVYVIEVNPRASRT----VPFLSKITGIEMVQVATKII 860



 Score = 74.0 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 51/320 (15%), Positives = 111/320 (34%), Gaps = 42/320 (13%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI---------DVD------------RSVGLV 45
           G ++E + S   G     AL + G++V  +         D +             ++  +
Sbjct: 21  GQAAEFDYS---GTQACLALREEGYEVILVNSNPATIMTDTEIADKVYLEPLTVEALTRI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +    PD     L G  G +  +      IL+ L I    + + +   + D+   K++  
Sbjct: 78  IYQEYPDAILPTLGGQNGLNMALALSKTGILDKLNIELLGTKLKSIEQAEDREEFKKLCK 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G PV PS+ V+     +     I  P +++P       G  +    + +   + +   
Sbjct: 138 QLGEPVPPSLTVHNAEDALAFAEKIGYPIIVRPAFTMGGTGGGICNNRKELATVVARGLD 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   + LIE+ + G  E+   VM D + +   I   ++  +     ++  +        
Sbjct: 198 LSPVTECLIEKSIAGYKEIEFEVMRDCTDNCMIICCMEN--FDPVGIHTGDSIVFSPSQT 255

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV-------QPGMTPV 271
           +    Y+ ++  +    +A+   G        +P S     +E+N               
Sbjct: 256 LSDKEYQMLRDCSLNLIRALKIEGGCNVQLALNPNSFDYDVIEVNPRVSRSSALASKATG 315

Query: 272 SIFPEMAA--YAGYSFRELL 289
               +MAA    G +  E++
Sbjct: 316 YPIAKMAAKIAVGMTLDEII 335


>gi|309809683|ref|ZP_07703539.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus iners
           SPIN 2503V10-D]
 gi|308170043|gb|EFO72080.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus iners
           SPIN 2503V10-D]
          Length = 1055

 Score = 89.4 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 47/297 (15%), Positives = 105/297 (35%), Gaps = 38/297 (12%)

Query: 22  CASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ--- 69
           C  AL+  G+K   I         D   S  L    +  +   N++     E  ++Q   
Sbjct: 577 CVKALQKLGYKAIVINSNPETVSTDFSISDKLYFEPITLEDVLNIVDIEKPEGVIIQFGA 636

Query: 70  -------AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDS 120
                  A L+   +    + +     + D+    QV+ + G+     +        +D+
Sbjct: 637 QTAINLAAGLKEHGVKILGTDVEDINRAEDREEFDQVIKNLGLKQPKGLTATTRQGVIDA 696

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +++P        + ++  +  +   L  ++   +   +L++ Y+DG E    
Sbjct: 697 AIKIGYPVLVRPSYVLGGKAMEIVYNEAELEEYLDNNAYITNDHPILVDDYLDGKECDVD 756

Query: 181 VMGDAS---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQ 236
            + D     +      V  +  +S        +S  V P +    DI +++  +      
Sbjct: 757 AISDGVDILIPGIMEHVEHAGVHS-------GDSMAVYPPQSFLDDIQQKICEVTRKLAI 809

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           A+ C+GI    F+       V+ +E+N +   T     P ++   G    ++   ++
Sbjct: 810 ALKCQGIMNIQFIVR--DNDVYVIEVNPRASRT----VPFLSKITGIEMVQVATKII 860



 Score = 73.2 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 50/323 (15%), Positives = 108/323 (33%), Gaps = 48/323 (14%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI---------DVD------------RSVGLV 45
           G ++E + S   G     AL + G++V  +         D +             ++  +
Sbjct: 21  GQAAEFDYS---GTQACLALREEGYEVILVNSNPATIMTDTEIADKVYLEPLTVEALTRI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +    PD     L G  G +  +      IL+ L I    + + +   + D+   K++  
Sbjct: 78  IYQEYPDAILPTLGGQNGLNMALALSKTGILDKLNIELLGTKLKSIEQAEDREEFKKLCK 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G PV PS+ V+     +     I  P +++P       G  +    + +   + +   
Sbjct: 138 QLGEPVPPSLTVHNAEDALAFAEKIGYPIIVRPAFTMGGTGGGICNNRKELATVVARGLD 197

Query: 160 WNHGDQLLIEQYVDG---IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216
            +   + LIE+ + G   IE         +  +            +     + +S    P
Sbjct: 198 LSPVTECLIEKSIAGYKEIEFEVMRDCTDNCMIVCCMENFDPVGIH-----TGDSIVFSP 252

Query: 217 AK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV-------QPGM 268
           ++ +    Y+ ++  +    +A+   G        +P S     +E+N            
Sbjct: 253 SQTLSDKEYQMLRDCSLNLIRALKIEGGCNVQLALNPNSFDYDVIEVNPRVSRSSALASK 312

Query: 269 TPVSIFPEMAA--YAGYSFRELL 289
                  +MAA    G +  E++
Sbjct: 313 ATGYPIAKMAAKIAVGMTLDEII 335


>gi|83414145|dbj|BAE53863.1| D-alanine:D-alanine ligase [Streptococcus gordonii]
 gi|83414151|dbj|BAE53866.1| D-alanine:D-alanine ligase [Streptococcus gordonii]
          Length = 96

 Score = 89.4 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 28/95 (29%), Positives = 51/95 (53%), Gaps = 2/95 (2%)

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTH 213
              ++ +  ++L+EQ V   E+  G++G+A +  +     V    FY Y+ KY     T 
Sbjct: 2   LDLAFKYDSRVLVEQGVTAREIEVGLLGNADVKSSLPGEVVKDVAFYDYQAKYIDNKITM 61

Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
            +PA++P  +   +++ A +A +AIG  G+SR DF
Sbjct: 62  AIPAQLPEGVVNTMRQNAEIAFRAIGGLGLSRCDF 96


>gi|259501322|ref|ZP_05744224.1| carbamoyl-phosphate synthase [Lactobacillus iners DSM 13335]
 gi|259167292|gb|EEW51787.1| carbamoyl-phosphate synthase [Lactobacillus iners DSM 13335]
          Length = 1063

 Score = 89.4 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 47/297 (15%), Positives = 105/297 (35%), Gaps = 38/297 (12%)

Query: 22  CASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ--- 69
           C  AL+  G+K   I         D   S  L    +  +   N++     E  ++Q   
Sbjct: 585 CVKALQKLGYKAIVINSNPETVSTDFSISDKLYFEPITLEDVLNIVDIEKPEGVIIQFGA 644

Query: 70  -------AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDS 120
                  A L+   +    + +     + D+    QV+ + G+     +        +D+
Sbjct: 645 QTAINLAAGLKEHGVKILGTDVEDINRAEDREEFDQVIKNLGLKQPKGLTATTRQGVIDA 704

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +++P        + ++  +  +   L  ++   +   +L++ Y+DG E    
Sbjct: 705 AIKIGYPVLVRPSYVLGGKAMEIVYNEAELEEYLDNNAYITNDHPILVDDYLDGKECDVD 764

Query: 181 VMGDAS---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQ 236
            + D     +      V  +  +S        +S  V P +    DI +++  +      
Sbjct: 765 AISDGVDILIPGIMEHVEHAGVHS-------GDSMAVYPPQSFLDDIQQKICEVTRKLAI 817

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           A+ C+GI    F+       V+ +E+N +   T     P ++   G    ++   ++
Sbjct: 818 ALKCQGIMNIQFIVR--DNDVYVIEVNPRASRT----VPFLSKITGIEMVQVATKII 868



 Score = 72.5 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 49/323 (15%), Positives = 107/323 (33%), Gaps = 48/323 (14%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI---------DVD------------RSVGLV 45
           G ++E + S   G     AL + G++V  +         D +             ++  +
Sbjct: 29  GQAAEFDYS---GTQACLALREEGYEVILVNSNPATIMTDTEIADKVYLEPLTVEALTRI 85

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +    PD     L G  G +  +      IL+ L I    + + +   + D+   K++  
Sbjct: 86  IYQEYPDAILPTLGGQNGLNMALALSKTGILDKLNIELLGTKLKSIEQAEDREEFKKLCK 145

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G PV PS+ V+     +     I  P +++P       G  +    + +   + +   
Sbjct: 146 QLGEPVPPSLTVHNAEDALAFAEKIGYPIIVRPAFTMGGTGGGICNNRKELATVVARGLD 205

Query: 160 WNHGDQLLIEQYVDG---IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216
            +   + LIE+ + G   IE         +  +            +     + +S    P
Sbjct: 206 LSPVTECLIEKSIAGYKEIEFEVMRDCTDNCMIVCCMENFDPVGIH-----TGDSIVFSP 260

Query: 217 AK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV-------QPGM 268
           ++ +    Y+ ++  +    +A+   G        +  S     +E+N            
Sbjct: 261 SQTLSDKEYQMLRDCSLNLIRALKIEGGCNVQLALNTNSFDYDVIEVNPRVSRSSALASK 320

Query: 269 TPVSIFPEMAA--YAGYSFRELL 289
                  +MAA    G +  E++
Sbjct: 321 ATGYPIAKMAAKIAVGMTLDEII 343


>gi|193872962|gb|ACF23171.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
          Length = 96

 Score = 89.4 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 30/96 (31%), Positives = 51/96 (53%), Gaps = 2/96 (2%)

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNST 212
               ++ +  ++L+EQ V+  E+  G++G+  +  T     V    FY Y+ KY     T
Sbjct: 1   ALKLAFRYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKIT 60

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
             +PAKI  D+   +++ A +A +AIG  G+SR DF
Sbjct: 61  MDIPAKISDDVVAVMRQNAEIAFRAIGGLGLSRCDF 96


>gi|193872864|gb|ACF23122.1| D-alanine-D-alanine ligase [Streptococcus mitis]
 gi|193872888|gb|ACF23134.1| D-alanine-D-alanine ligase [Streptococcus mitis]
          Length = 96

 Score = 89.4 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 30/96 (31%), Positives = 51/96 (53%), Gaps = 2/96 (2%)

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNST 212
               ++ +  ++L+EQ V+  E+  G++G+  +  T     V    FY Y+ KY     T
Sbjct: 1   ALKLAFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKIT 60

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
             +PAKI  D+   +++ A +A +AIG  G+SR DF
Sbjct: 61  MDIPAKISDDVVAVMRQNAEIAFRAIGGLGLSRCDF 96


>gi|325285852|ref|YP_004261642.1| ATP-grasp fold domain-containing protein [Cellulophaga lytica DSM
           7489]
 gi|324321306|gb|ADY28771.1| ATP-grasp fold domain protein, DUF201-type [Cellulophaga lytica DSM
           7489]
          Length = 347

 Score = 89.4 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 42/228 (18%), Positives = 88/228 (38%), Gaps = 28/228 (12%)

Query: 92  DKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
           DK  + +++   G+ +  + L+        +    P V+KP++G  S G+ ++K ++ + 
Sbjct: 114 DKWTTNKLLKENGILIPETTLITEGDT-INYKGDFPIVVKPIRGRGSQGVSLVKNEKELN 172

Query: 152 LDL-LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV-----------TEIAVPKSDF 199
             L     S  +G  + +EQ++ G E+T  VM   S  +               V + + 
Sbjct: 173 AKLSSLFLSKQYGTSVYLEQFLSGQEITITVMPSGSYIINNNKKQFTTAWCLPPVKRFNH 232

Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF-----LAHQAIGCRGISRSDFLFDPLS 254
            +    Y+   +     A +        Q +A       A + +  +   R D   D   
Sbjct: 233 QNGIAPYNGTVAVIKNSALLDNSERNSNQIIAVCKQCEKAAELLHIKAPIRIDCRADEKG 292

Query: 255 RKVFWLEINVQPGMT---------PVSIFPEMAAYAGYSFRELLLWMV 293
              +  ++N++P MT           S+    A   G+++ +LL  M+
Sbjct: 293 N-YYLFDVNMKPNMTGPSRPQRKNQDSLSSLAARGIGWNYFDLLKNML 339


>gi|315653073|ref|ZP_07906001.1| carbamoyl-phosphate synthase [Lactobacillus iners ATCC 55195]
 gi|315489608|gb|EFU79242.1| carbamoyl-phosphate synthase [Lactobacillus iners ATCC 55195]
          Length = 1063

 Score = 89.4 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 47/297 (15%), Positives = 105/297 (35%), Gaps = 38/297 (12%)

Query: 22  CASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ--- 69
           C  AL+  G+K   I         D   S  L    +  +   N++     E  ++Q   
Sbjct: 585 CVKALQKLGYKAIVINSNPETVSTDFSISDKLYFEPITLEDVLNIVDIEKPEGVIIQFGA 644

Query: 70  -------AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDS 120
                  A L+   +    + +     + D+    QV+ + G+     +        +D+
Sbjct: 645 QTAINLAAGLQEHGVKILGTDVEDINRAEDREEFDQVIKNLGLKQPKGLTATTRQGVIDA 704

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +++P        + ++  +  +   L  ++   +   +L++ Y+DG E    
Sbjct: 705 AIKIGYPVLVRPSYVLGGKAMEIVYNEAELEEYLDNNAYITNDHPILVDDYLDGKECDVD 764

Query: 181 VMGDAS---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQ 236
            + D     +      V  +  +S        +S  V P +    DI +++  +      
Sbjct: 765 AISDGVDILIPGIMEHVEHAGVHS-------GDSMAVYPPQSFLDDIQQKICEVTRKLAI 817

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           A+ C+GI    F+       V+ +E+N +   T     P ++   G    ++   ++
Sbjct: 818 ALKCQGIMNIQFIVR--DNDVYVIEVNPRASRT----VPFLSKITGIEMVQVATKII 868



 Score = 72.8 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 50/323 (15%), Positives = 108/323 (33%), Gaps = 48/323 (14%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI---------DVD------------RSVGLV 45
           G ++E + S   G     AL + G++V  +         D +             ++  +
Sbjct: 29  GQAAEFDYS---GTQACLALREEGYEVILVNSNPATIMTDTEIADKVYLEPLTVEALTRI 85

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +    PD     L G  G +  +      IL+ L I    + + +   + D+   K++  
Sbjct: 86  IYQEYPDAILPTLGGQNGLNMALALSKTGILDKLNIELLGTKLKSIEQAEDREEFKKLCK 145

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G PV PS+ V+     +     I  P +++P       G  +    + +   + +   
Sbjct: 146 QLGEPVPPSLTVHNAEDALAFAEKIGYPIIVRPAFTMGGTGGGICNNRKELATVVARGLD 205

Query: 160 WNHGDQLLIEQYVDG---IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216
            +   + LIE+ + G   IE         +  +            +     + +S    P
Sbjct: 206 LSPVTECLIEKSIAGYKEIEFEVMRDCTDNCMIVCCMENFDPVGIH-----TGDSIVFSP 260

Query: 217 AK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV-------QPGM 268
           ++ +    Y+ ++  +    +A+   G        +P S     +E+N            
Sbjct: 261 SQTLSDKEYQMLRDCSLNLIRALKIEGGCNVQLALNPNSFDYDVIEVNPRVSRSSALASK 320

Query: 269 TPVSIFPEMAA--YAGYSFRELL 289
                  +MAA    G +  E++
Sbjct: 321 ATGYPIAKMAAKIAVGMTLDEII 343


>gi|312875183|ref|ZP_07735196.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus iners
           LEAF 2053A-b]
 gi|311089290|gb|EFQ47721.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus iners
           LEAF 2053A-b]
          Length = 1055

 Score = 89.4 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 47/297 (15%), Positives = 105/297 (35%), Gaps = 38/297 (12%)

Query: 22  CASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ--- 69
           C  AL+  G+K   I         D   S  L    +  +   N++     E  ++Q   
Sbjct: 577 CVKALQKLGYKAIVINSNPETVSTDFSISDKLYFEPITLEDVLNIVDIEKPEGVIIQFGA 636

Query: 70  -------AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDS 120
                  A L+   +    + +     + D+    QV+ + G+     +        +D+
Sbjct: 637 QTAINLAAGLQEHGVKILGTDVEDINRAEDREEFDQVIKNLGLKQPKGLTATTRQGVIDA 696

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +++P        + ++  +  +   L  ++   +   +L++ Y+DG E    
Sbjct: 697 AIKIGYPVLVRPSYVLGGKAMEIVYNEAELEEYLDNNAYITNDHPILVDDYLDGKECDVD 756

Query: 181 VMGDAS---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQ 236
            + D     +      V  +  +S        +S  V P +    DI +++  +      
Sbjct: 757 AISDGVDILIPGIMEHVEHAGVHS-------GDSMAVYPPQSFLDDIQQKICEVTRKLAI 809

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           A+ C+GI    F+       V+ +E+N +   T     P ++   G    ++   ++
Sbjct: 810 ALKCQGIMNIQFIVR--DNDVYVIEVNPRASRT----VPFLSKITGIEMVQVATKII 860



 Score = 74.4 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 50/323 (15%), Positives = 108/323 (33%), Gaps = 48/323 (14%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI---------DVD------------RSVGLV 45
           G ++E + S   G     AL + G++V  +         D +             ++  +
Sbjct: 21  GQAAEFDYS---GTQACLALREEGYEVILVNSNPATIMTDTEIADKVYLEPLTVEALTRI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +    PD     L G  G +  +      IL+ L I    + + +   + D+   K++  
Sbjct: 78  IYQEYPDAILPTLGGQNGLNMALALSKTGILDKLNIELLGTKLKSIEQAEDREEFKKLCK 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G PV PS+ V+     +     I  P +++P       G  +    + +   + +   
Sbjct: 138 QLGEPVPPSLTVHNAEDALTFAEKIGYPIIVRPAFTMGGTGGGICNNRKELAAVVARGLD 197

Query: 160 WNHGDQLLIEQYVDG---IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216
            +   + LIE+ + G   IE         +  +            +     + +S    P
Sbjct: 198 LSPVTECLIEKSIAGYKEIEFEVMRDCTDNCMIVCCMENFDPVGIH-----TGDSIVFSP 252

Query: 217 AK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV-------QPGM 268
           ++ +    Y+ ++  +    +A+   G        +P S     +E+N            
Sbjct: 253 SQTLSDKEYQMLRDCSLNLIRALKIEGGCNVQLALNPNSFDYDVIEVNPRVSRSSALASK 312

Query: 269 TPVSIFPEMAA--YAGYSFRELL 289
                  +MAA    G +  E++
Sbjct: 313 ATGYPIAKMAAKIAVGMTLDEII 335


>gi|317046336|ref|YP_004113984.1| urea carboxylase [Pantoea sp. At-9b]
 gi|316947953|gb|ADU67428.1| urea carboxylase [Pantoea sp. At-9b]
          Length = 1199

 Score = 89.4 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 41/256 (16%), Positives = 89/256 (34%), Gaps = 32/256 (12%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            LH  +G   E+       E   + +        A    K R++ +     VP+ P    
Sbjct: 77  ALHPGYGFLSENPDFVNRCEAAGLHFLGPNAQQMAAFGLKHRARALAQQNNVPLLPGSGL 136

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN----HGDQL 166
           +        +   I  P ++K   GG  +G+      Q +     +           D +
Sbjct: 137 LTSLEQAQVAASEIGYPVMLKSTAGGGGIGMQRCDDAQQLADAFTRVKRLAGHNFADDGV 196

Query: 167 LIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIY 224
            +E+++     +   + GD + +V  +            +  +       PA  +   + 
Sbjct: 197 FLEKFIARARHIEVQIFGDGAGEVIALGE-----RDCSAQRRNQKVMEETPAPGLSDAVR 251

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
            E+Q  A    +A+  R     ++++D  S++ ++LE+N             +    G +
Sbjct: 252 AELQATAVRLGRAVQYRSAGTVEYVYDEGSQQFWFLEVNT-----------RLQVEHGVT 300

Query: 285 ---FR-ELLLWMVEDA 296
              +  +L+ WMV+ A
Sbjct: 301 EMVYGVDLVRWMVQLA 316


>gi|115524994|ref|YP_781905.1| acetyl-CoA carboxylase biotin carboxylase subunit [Rhodopseudomonas
           palustris BisA53]
 gi|115518941|gb|ABJ06925.1| acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha /
           biotin carboxylase [Rhodopseudomonas palustris BisA53]
          Length = 451

 Score = 89.4 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 79/221 (35%), Gaps = 20/221 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     IL    + +         L  DK+ +K+     G+PV P    
Sbjct: 77  AVHPGYGFLSENARFAEILADHNLHFIGPKSEHIRLMGDKIEAKKTAKRLGIPVVPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS-----SSWNHGD 164
            +  +   M   H I  P ++K   GG   G+ V +    + L L  +     S++    
Sbjct: 137 AVTPDDDAMSIAHAIGFPVLVKAASGGGGRGMKVAQTPDDLMLALSTAGNEAKSAFG-DA 195

Query: 165 QLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            + +E+Y+     +   V+GD       +            K      + +    +  + 
Sbjct: 196 SVYLEKYLQKPRHIEIQVLGDGRGGAIHLGERDCSLQRRHQKVWEEGPSPI----LSAEA 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             ++      A Q +   G+   +FL+     + +++E+N 
Sbjct: 252 RAKIGATCAKAMQDMQYLGVGTIEFLY--EDGEFYFIEMNT 290


>gi|226954243|ref|ZP_03824707.1| urea carboxylase [Acinetobacter sp. ATCC 27244]
 gi|226835007|gb|EEH67390.1| urea carboxylase [Acinetobacter sp. ATCC 27244]
          Length = 1206

 Score = 89.4 bits (221), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 34/233 (14%), Positives = 74/233 (31%), Gaps = 13/233 (5%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
             +         +  F   +G   E        E   I +             K R++++
Sbjct: 69  EKLIQAAKQTGAEAIFPG-YGFLSESADFSRACEENNIAFMGPTAEQILEFGLKHRAREL 127

Query: 100 VSSCGVPVCPSILVN---RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL- 155
            ++  VP+ P   +       + +   I  P ++K   GG  +G+      Q++      
Sbjct: 128 AAAANVPMTPGTGLLDSLEEALTAADRIGYPIMLKSTAGGGGIGLTRCDTPQALTNAYES 187

Query: 156 ---QSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
                  +     + IE ++D    +   + GD    V               K      
Sbjct: 188 VKRLGEQFFKDAGVFIECFIDKARHVEVQIFGDGKGQVVAFGERDCSLQRRNQK----VV 243

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
                A +P    K++ + A    +++  R     +F++D    + ++LE+N 
Sbjct: 244 EETPAANLPEATRKKLHQAAIELGKSVNYRSAGTVEFIYDANRDEFYFLEVNT 296


>gi|119598745|gb|EAW78339.1| methylcrotonoyl-Coenzyme A carboxylase 1 (alpha), isoform CRA_a
           [Homo sapiens]
          Length = 434

 Score = 89.0 bits (220), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 82/221 (37%), Gaps = 19/221 (8%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H   G   E+     + +   I +      A      K  SK ++++ GVPV      
Sbjct: 86  AIHPGCGFLSENMEFAELCKQEGIIFIGPPPSAIRDMGIKSTSKSIMAAAGVPVVEGYHG 145

Query: 113 ---VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
               ++   +    I  P +IK ++GG   G+ +++ +Q     L  +          D 
Sbjct: 146 EDQSDQCLKEHARRIGYPVMIKAVRGGGGKGMRIVRSEQEFQEQLESARREAKKSFNDDA 205

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           +LIE++VD    +   V GD   +   +           ++          PA  I  ++
Sbjct: 206 MLIEKFVDTPRHVEVQVFGDHHGNAVYL-----FERDCSVQRRHQKIIEEAPAPGIKSEV 260

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            K++   A  A +A+   G    +F+ D       ++E+N 
Sbjct: 261 RKKLGEAAVRAAKAVNYVGAGTVEFIMDSKHN-FCFMEMNT 300


>gi|328470884|gb|EGF41795.1| putative acyl-CoA carboxylase alpha chain [Vibrio parahaemolyticus
           10329]
          Length = 691

 Score = 89.0 bits (220), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 83/221 (37%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+  +        I +      A      K ++K ++S   VP+ P    
Sbjct: 77  AIHPGYGFLSENPKLAKACSENGIVFIGPSTSAIEAMGSKSQAKAIMSEANVPLVPGYHG 136

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
              +++        I  P ++K  +GG   G+ V+     +PL +     ++ S     Q
Sbjct: 137 TDNSIEHLSAEAEKIGYPVMLKATQGGGGKGMRVVNSAAEMPLAIDGAQREALSSFGDKQ 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           LLIE+ +     +   V  D   +   ++           K          PA  +  ++
Sbjct: 197 LLIEKCILRPRHVEVQVFADQHGNCVYLSDRDCSIQRRHQK-----VVEEAPAPGLSDEL 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            K++ + A  A QAI   G    +FL D    + +++E+N 
Sbjct: 252 RKQMGKAAVQAAQAIDYVGAGTVEFLLDSR-GQFYFMEMNT 291


>gi|260461806|ref|ZP_05810052.1| Carbamoyl-phosphate synthase L chain ATP-binding [Mesorhizobium
           opportunistum WSM2075]
 gi|319785343|ref|YP_004144819.1| hypothetical protein Mesci_5700 [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|259032447|gb|EEW33712.1| Carbamoyl-phosphate synthase L chain ATP-binding [Mesorhizobium
           opportunistum WSM2075]
 gi|317171231|gb|ADV14769.1| protein of unknown function DUF201 [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 398

 Score = 89.0 bits (220), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 45/257 (17%), Positives = 91/257 (35%), Gaps = 29/257 (11%)

Query: 23  ASALEDAGFKVSQIDVDRSVGLVLAHLK----PDLAFNVLHGNFGEDGLVQA----ILEL 74
              L   G +  +ID D    L+    +     D+A   + G  G D  + A    +   
Sbjct: 28  YDYLAAKGIEAIRIDTDNLNALIHECSRLRATYDIA--GITGFAGLDESIPATVGKLCRH 85

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYVIKP 132
             +P       +     DK   +Q++    VP+    L    T    +   I  P V+KP
Sbjct: 86  FGLP--GPNPASVERCCDKFTQRQLLDDADVPIPAYRLAANATDAERAAAEIGLPVVLKP 143

Query: 133 LKGGSSLGIIVIKKDQSIPLD----LLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD 188
             G  S+G+ + +    +       L     W    ++++E++V G      +MG   + 
Sbjct: 144 AVGIRSIGVRLCRNIDELAEHTTYLLGGKHIWRSSPRIVVEEFVQGPLYVANLMGTEVIG 203

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR-GISRSD 247
           ++        ++        +      PA +  D ++ +  ++    +A+G   G S  +
Sbjct: 204 ISAYEFGPPPYF--------VVRECTCPAPLIDDEHQRIGDVSLSCLRALGLGWGPSNIE 255

Query: 248 FLFDPLSRKVFWLEINV 264
           F +         +E+N 
Sbjct: 256 FRWTK--GGPVVIEVNP 270


>gi|194014909|ref|ZP_03053526.1| biotin carboxylase (Acetyl-CoA carboxylase subunit A) (ACC)
           [Bacillus pumilus ATCC 7061]
 gi|194013935|gb|EDW23500.1| biotin carboxylase (Acetyl-CoA carboxylase subunit A) (ACC)
           [Bacillus pumilus ATCC 7061]
          Length = 449

 Score = 89.0 bits (220), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 82/220 (37%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+           I +            +K+ +++ +   G+P+ P +  
Sbjct: 77  AIHPGYGLLSENAAFAERCRSEGIAFIGPSAQVIQRMGNKIEARKTMDHTGIPIVPGVSA 136

Query: 114 NRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
                +        +  P ++K   GG  +G+ +++ D+ +         ++ S+ +   
Sbjct: 137 PLHDAEEGISKAQSLGYPIMLKASSGGGGIGMQLVRNDEELRKAFEGNQKRAQSFFNDGT 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           L +E+ + D   +   V+ D+      +            K           A +   + 
Sbjct: 197 LYMEKVIEDARHIEIQVLFDSFGHGVHLFERDCSLQRRHQKII----EEAPAACLDESVR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +E+ R+A  A +AIG       + L D  +++ ++LE+N 
Sbjct: 253 QEMGRVAVKAAKAIGYENAGTIECLVD-QNQQFYFLEMNT 291


>gi|109896650|ref|YP_659905.1| carbamoyl-phosphate synthase L chain, ATP-binding
           [Pseudoalteromonas atlantica T6c]
 gi|109698931|gb|ABG38851.1| Carbamoyl-phosphate synthase L chain, ATP-binding protein
           [Pseudoalteromonas atlantica T6c]
          Length = 689

 Score = 89.0 bits (220), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 76/220 (34%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+       +   I +      A  L   K  SK  +   GVP  P    
Sbjct: 105 AIHPGYGFLSENPAFARACDAAGIQFIGPDASAIELMGSKRLSKVAMLDAGVPCIPGYQG 164

Query: 112 --LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS-----SSWNHGD 164
               ++  +     +  P ++K   GG   G+ ++ +   +   +  +     S++  G+
Sbjct: 165 AEQSDQVLVKKAADVGFPIMVKASAGGGGRGMRLVTEQGELAAQIKTARSEALSAFGSGE 224

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
            +L    +    +   +  D+  +   +            K             +  ++ 
Sbjct: 225 LILERAVLAPRHIEIQIFADSHGNTVYLGERDCSIQRRHQK----VVEEAPSPFVDEELR 280

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + + + A  A +A G +G    +FL D   +  ++LE+N 
Sbjct: 281 ERMGQAAVSAAKACGYQGAGTVEFLVD-SDKNFYFLEMNT 319


>gi|330507533|ref|YP_004383961.1| acetyl-CoA carboxylase [Methanosaeta concilii GP-6]
 gi|328928341|gb|AEB68143.1| acetyl-CoA carboxylase [Methanosaeta concilii GP-6]
          Length = 496

 Score = 89.0 bits (220), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 84/221 (38%), Gaps = 20/221 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+ +  +  +   I +      A      K+ ++Q +   GVP+ P I  
Sbjct: 79  AIHPGYGFLSENTVFASTCKENGIVFIGPPSTAIDAMGSKITARQTMKEAGVPIVPGIEE 138

Query: 114 ----NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGD 164
                   MD    I  P ++KP  GG  +G+ ++   + +   L     +  +++   D
Sbjct: 139 GINDPDEAMDLADGIGYPIILKPAAGGGGIGMKIVGSREEMLPALTSSQSVARNAFG-DD 197

Query: 165 QLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            + IE+Y+ +   +   ++ D       ++  +        K             +  ++
Sbjct: 198 TIYIEKYLTEPRHIEFQILADEMGKTIYVSDRECSIQRRHQK----LIEESPSPVMSDEL 253

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +  +A  A +AIG       +F++       ++LE+N 
Sbjct: 254 RERMGSIAVKAAKAIGYASAGTVEFMYSR--GDFYFLEMNT 292


>gi|330837670|ref|YP_004412311.1| carbamoyl-phosphate synthase large subunit [Spirochaeta coccoides
           DSM 17374]
 gi|329749573|gb|AEC02929.1| carbamoyl-phosphate synthase large subunit [Spirochaeta coccoides
           DSM 17374]
          Length = 1081

 Score = 89.0 bits (220), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 49/279 (17%), Positives = 111/279 (39%), Gaps = 37/279 (13%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ + +                     V  ++A  +PD    
Sbjct: 29  SGTQAVQALREEGYEVVLVNPNPATVMTTPGIADAIYLEPLTVPYVTDIIARERPDAILT 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G  G +  ++     IL+   +    +GI +  L+ D+   K++++S G+    S+ 
Sbjct: 89  TMGGQTGLNLTIELHKKGILDTYGVQVIGAGINSIELAEDRRLFKEIITSLGLESARSVT 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           V         + ++  P +++P      +G  +I+ ++     +  +   +   ++L+E+
Sbjct: 149 VKSVAEAEAFKKIVGLPLILRPSFTLGGMGGGIIRSEEEFHPAMKHALEASPVGEVLVEE 208

Query: 171 YVDG-IELTCGVMGDA-SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            + G  E    VM D     +   ++   D           +S  V P + +    Y+++
Sbjct: 209 SLLGWKEFELEVMRDKNDNAIIVCSIENVDPMGVHT----GDSITVAPIQTLSDQAYQKM 264

Query: 228 QRLAFLAHQAIG--CRGISRSDFLFDPLSRKVFWLEINV 264
           +  +    +AIG  C G S   F   P + ++  +E+N 
Sbjct: 265 RTASIDILRAIGVDCGG-SNVQFAVQPGTGRMVVIEMNP 302



 Score = 44.3 bits (104), Expect = 0.020,   Method: Composition-based stats.
 Identities = 39/293 (13%), Positives = 96/293 (32%), Gaps = 45/293 (15%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ------ 69
           AL   G +   I         D + S  L +  L P+    VL        ++Q      
Sbjct: 590 ALRKLGHRTIMINSNPETVSTDFNISDRLYVEPLTPEHVLRVLELEKTRTVVLQLGGQTP 649

Query: 70  -AILELL---EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTMDSQHL 123
             +++ L    +    +     +++ D+ +   ++   G+    +         M   + 
Sbjct: 650 LNMMDTLVAHGVKVVGTSPADVSIADDRGKFAALIRKLGLHQSENRTAYSPSEVMTHANE 709

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV--------DGI 175
           +  P +++P        + +   D ++   L    + +    LL+++++        D +
Sbjct: 710 VGYPVLLRPSHVLGGRNMFIAFDDDAVRGFLDGGVNVSSASPLLVDKFLEDAFEYDLDAV 769

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
                +     L   E A   S            ++    P K   ++   +++ A    
Sbjct: 770 SDGTSLYIGGILQHIEAAGIHSG----------DSAAVFPPYKSTPEVLNAMRKAALDLA 819

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
            A+  +G     F       +++ +E+N +   T     P ++  +G    E+
Sbjct: 820 CALSIKGFMNIQFAV--KDGQLYVIEVNPRASRT----VPFISKASGVDLVEV 866


>gi|309803567|ref|ZP_07697659.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus iners
           LactinV 11V1-d]
 gi|308164315|gb|EFO66570.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus iners
           LactinV 11V1-d]
          Length = 1055

 Score = 89.0 bits (220), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 47/297 (15%), Positives = 106/297 (35%), Gaps = 38/297 (12%)

Query: 22  CASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ--- 69
           C  AL+  G+K   I         D   S  L    +  +   N++     E  ++Q   
Sbjct: 577 CVKALQKLGYKAIVINSNPETVSTDFSISDKLYFEPITLEDVLNIVDIEKPEGVIIQFGA 636

Query: 70  -------AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL--VNRFTMDS 120
                  A L+   +    + +     + D+    QV+ + G+     +     +  +D+
Sbjct: 637 QTAINLAAGLQEHGVKILGTDVEDINRAEDREEFDQVIKNLGLKQPKGLTSTTRQGVIDA 696

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +++P        + ++  +  +   L  ++   +   +L++ Y+DG E    
Sbjct: 697 AIKIGYPVLVRPSYVLGGKAMEIVYNEAELGEYLDNNAYITNDHPILVDDYLDGKECDVD 756

Query: 181 VMGDAS---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQ 236
            + D     +      V  +  +S        +S  V P +    DI +++  +      
Sbjct: 757 AISDGVDILIPGIMEHVEHAGVHS-------GDSMAVYPPQSFSDDIQQKICEVTRKLAI 809

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           A+ C+GI    F+       V+ +E+N +   T     P ++   G    ++   ++
Sbjct: 810 ALKCQGIMNIQFIVR--DNDVYVIEVNPRASRT----VPFLSKITGIEMVQVATKII 860



 Score = 73.2 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 50/323 (15%), Positives = 108/323 (33%), Gaps = 48/323 (14%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI---------DVD------------RSVGLV 45
           G ++E + S   G     AL + G++V  +         D +             ++  +
Sbjct: 21  GQAAEFDYS---GTQACLALREEGYEVILVNSNPATIMTDTEIADKVYLEPLTVEALTRI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +    PD     L G  G +  +      IL+ L I    + + +   + D+   K++  
Sbjct: 78  IYQEYPDAILPTLGGQNGLNMALALSKTGILDKLNIELLGTKLKSIEQAEDREEFKKLCK 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G PV PS+ V+     +     I  P +++P       G  +    + +   + +   
Sbjct: 138 QLGEPVPPSLTVHNAEDALTFAEKIGYPIIVRPAFTMGGTGGGICNNRKELATVVARGLD 197

Query: 160 WNHGDQLLIEQYVDG---IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216
            +   + LIE+ + G   IE         +  +            +     + +S    P
Sbjct: 198 LSPVTECLIEKSIAGYKEIEFEVMRDCTDNCMIVCCMENFDPVGIH-----TGDSIVFSP 252

Query: 217 AK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV-------QPGM 268
           ++ +    Y+ ++  +    +A+   G        +P S     +E+N            
Sbjct: 253 SQTLSDKEYQMLRDCSLNLIRALKIEGGCNVQLALNPNSFDYDVIEVNPRVSRSSALASK 312

Query: 269 TPVSIFPEMAA--YAGYSFRELL 289
                  +MAA    G +  E++
Sbjct: 313 ATGYPIAKMAAKIAVGMTLDEII 335


>gi|15430596|dbj|BAB64425.1| vancomycin resistance protein C-2 [Enterococcus casseliflavus]
          Length = 115

 Score = 89.0 bits (220), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 30/109 (27%), Positives = 54/109 (49%), Gaps = 4/109 (3%)

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
             P   KP + GSS GI  +   + I   L ++ +  +   +L+++ + G+E+ CG++G+
Sbjct: 7   GFPVFFKPNEAGSSKGITKVTCVEEIAPALKEAFA--YCSAVLLQKNIAGVEIGCGILGN 64

Query: 185 ASLDVTEIAVPK--SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
            SL V           F+ YE KY  +++   +PA +P  I   V+  A
Sbjct: 65  DSLTVGACDAISLVDGFFDYEEKYQLISAKITVPAPLPETIETRVKEQA 113


>gi|312873764|ref|ZP_07733809.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus iners
           LEAF 2052A-d]
 gi|311090762|gb|EFQ49161.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus iners
           LEAF 2052A-d]
          Length = 1055

 Score = 89.0 bits (220), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 47/297 (15%), Positives = 106/297 (35%), Gaps = 38/297 (12%)

Query: 22  CASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ--- 69
           C  AL+  G+K   I         D   S  L    +  +   N++     E  ++Q   
Sbjct: 577 CVKALQKLGYKAIVINSNPETVSTDFSISDKLYFEPITLEDVLNIVDIEKPEGVIIQFGA 636

Query: 70  -------AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL--VNRFTMDS 120
                  A L+   +    + +     + D+    QV+ + G+     +     +  +D+
Sbjct: 637 QTAINLAAGLKEHGVKILGTDVEDINRAEDREEFDQVIKNLGLKQPKGLTSTTRQGVIDA 696

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +++P        + ++  +  +   L  ++   +   +L++ Y+DG E    
Sbjct: 697 AIKIGYPVLVRPSYVLGGKAMEIVYNEAELGEYLDNNAYITNDHPILVDDYLDGKECDVD 756

Query: 181 VMGDAS---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQ 236
            + D     +      V  +  +S        +S  V P +    DI +++  +      
Sbjct: 757 AISDGVDILIPGIMEHVEHAGVHS-------GDSMAVYPPQSFSDDIQQKICEVTRKLAI 809

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           A+ C+GI    F+       V+ +E+N +   T     P ++   G    ++   ++
Sbjct: 810 ALKCQGIMNIQFIVR--DNDVYVIEVNPRASRT----VPFLSKITGIEMVQVATKII 860



 Score = 73.2 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 50/323 (15%), Positives = 108/323 (33%), Gaps = 48/323 (14%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI---------DVD------------RSVGLV 45
           G ++E + S   G     AL + G++V  +         D +             ++  +
Sbjct: 21  GQAAEFDYS---GTQACLALREEGYEVILVNSNPATIMTDTEIADKVYLEPLTVEALTRI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +    PD     L G  G +  +      IL+ L I    + + +   + D+   K++  
Sbjct: 78  IYQEYPDAILPTLGGQNGLNMALALSKTGILDKLNIELLGTKLKSIEQAEDREEFKKLCK 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G PV PS+ V+     +     I  P +++P       G  +    + +   + +   
Sbjct: 138 QLGEPVPPSLTVHNAEDALAFAEKIGYPIIVRPAFTMGGTGGGICNNRKELATVVARGLD 197

Query: 160 WNHGDQLLIEQYVDG---IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216
            +   + LIE+ + G   IE         +  +            +     + +S    P
Sbjct: 198 LSPVTECLIEKSIAGYKEIEFEVMRDCTDNCMIVCCMENFDPVGIH-----TGDSIVFSP 252

Query: 217 AK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV-------QPGM 268
           ++ +    Y+ ++  +    +A+   G        +P S     +E+N            
Sbjct: 253 SQTLSDKEYQMLRDCSLNLIRALKIEGGCNVQLALNPNSFDYDVIEVNPRVSRSSALASK 312

Query: 269 TPVSIFPEMAA--YAGYSFRELL 289
                  +MAA    G +  E++
Sbjct: 313 ATGYPIAKMAAKIAVGMTLDEII 335


>gi|254227632|ref|ZP_04921063.1| Acetyl/propionyl-CoA carboxylase, alpha subunit [Vibrio sp. Ex25]
 gi|262395680|ref|YP_003287533.1| methylcrotonyl-CoA carboxylase biotin-containing subunit [Vibrio
           sp. Ex25]
 gi|151939674|gb|EDN58501.1| Acetyl/propionyl-CoA carboxylase, alpha subunit [Vibrio sp. Ex25]
 gi|262339274|gb|ACY53068.1| methylcrotonyl-CoA carboxylase biotin-containing subunit [Vibrio
           sp. Ex25]
          Length = 686

 Score = 89.0 bits (220), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 80/221 (36%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+  +        I +      A      K ++K ++S   VP+ P    
Sbjct: 77  AIHPGYGFLSENPKLAKACSENGIVFIGPSTSAIEAMGSKSQAKAIMSEANVPLVPGYHG 136

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
              +++        I  P ++K  +GG   G+ V+     +PL +  +           Q
Sbjct: 137 TDNSVEHLLAEAEKIGYPVMLKATQGGGGKGMRVVNSAAEMPLAIDGAQREALSSFGDKQ 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           LLIE+ +     +   V  D   +   ++           K          PA  +  ++
Sbjct: 197 LLIEKCILQPRHVEVQVFADQHCNCVYLSDRDCSIQRRHQK-----VVEEAPAPGLSDEL 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            K++   A  A QAI   G    +FL D    + +++E+N 
Sbjct: 252 RKQMGEAAVQAAQAIDYVGAGTVEFLLDSR-GQFYFMEMNT 291


>gi|15430602|dbj|BAB64428.1| vancomycin resistance protein C-2 [Enterococcus casseliflavus]
          Length = 115

 Score = 89.0 bits (220), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 30/109 (27%), Positives = 55/109 (50%), Gaps = 4/109 (3%)

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
             P   KP + GSS GI  +   + I   L ++ +  +   +L+++ + G+E+ CG++G+
Sbjct: 7   GFPVFFKPNEAGSSKGITKVTCVEEIAPALKEAFA--YCSAVLLQKNIAGVEIGCGILGN 64

Query: 185 ASLDVTEIAVPK--SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
            SL V           F+ YE KY  +++   +PA +P  I  +V+  A
Sbjct: 65  DSLTVGACDAISLVDGFFDYEEKYQLISAKITVPAPLPETIETKVKEQA 113


>gi|284043915|ref|YP_003394255.1| pyruvate carboxylase [Conexibacter woesei DSM 14684]
 gi|283948136|gb|ADB50880.1| pyruvate carboxylase [Conexibacter woesei DSM 14684]
          Length = 1127

 Score = 89.0 bits (220), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 38/245 (15%), Positives = 89/245 (36%), Gaps = 17/245 (6%)

Query: 30  GFKV-SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
           G  V + +D   +V L L  +  D  +   +G   E+  +        I +         
Sbjct: 55  GHPVSTYLDPAVAVELALR-VGADAIYPG-YGFMSENPELARACAAAGIVFVGPPPEVLG 112

Query: 89  LSMDKMRSKQVVSSCGVPVCPS---ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145
           L+ +K R++    + GVPV  +   +        +   I  P  +K   GG   G+ ++ 
Sbjct: 113 LAGNKTRARDAALAAGVPVLDASDPVANAEEAHAAAERIGFPVFVKASHGGGGRGMRLVT 172

Query: 146 KDQSIPLDLLQS-----SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFY 200
               +   + ++     +++  G   + +  +    +   ++GDA+ +V  +        
Sbjct: 173 DPAKLAAAVQEARSEAEAAFGDGTVYIEQALIRPRHIEVQLLGDATGEVVHLYE-----R 227

Query: 201 SYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
              L+        + PA  +  ++   +   A    + +        +FL DP + +  +
Sbjct: 228 DCSLQRRHQKVIEITPAPNLAPELRDRICADAVKFARHVSYVNAGTVEFLLDPAAGRYAF 287

Query: 260 LEINV 264
           +E+N 
Sbjct: 288 IEMNP 292


>gi|296271675|ref|YP_003654306.1| acetyl-CoA carboxylase biotin carboxylase [Arcobacter nitrofigilis
           DSM 7299]
 gi|296095850|gb|ADG91800.1| acetyl-CoA carboxylase, biotin carboxylase [Arcobacter nitrofigilis
           DSM 7299]
          Length = 450

 Score = 89.0 bits (220), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 79/224 (35%), Gaps = 15/224 (6%)

Query: 50  KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109
             D  F   +G   E+     I  L  I +    +       DK ++K+ +   GVPV P
Sbjct: 76  GCDAIFPG-YGFLSENQDFVEICRLHNIKFIGPSVEVMEKMADKSKAKEEMVRAGVPVVP 134

Query: 110 SILVNRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSWN 161
                   +D        I  P + K   GG   G+ +I+ +            ++ +  
Sbjct: 135 GSTGAVHNVDEGRKVAREIGYPIMAKASAGGGGRGMRLIESEDKFDQLFTAASSEALAAF 194

Query: 162 HGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
               + +E+++ +   +   V+GD+  +   I            K    +   +    + 
Sbjct: 195 GDGTMYLERFINNPRHIEVQVVGDSHGNAIHIGERDCSLQRRHQKVIEESPAII----LN 250

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +   ++  +A  A + +   G    +FL D     ++++E+N 
Sbjct: 251 DETRAKLHAVAVKATKYLNYEGAGTFEFLADDKQN-IYFMEMNT 293


>gi|37731964|gb|AAP12665.1| putative biotin decarboxylase [Campylobacter jejuni subsp. jejuni
           81-176]
          Length = 394

 Score = 89.0 bits (220), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 42/215 (19%), Positives = 78/215 (36%), Gaps = 14/215 (6%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVN 114
           +G   E+     I     I +    + A  L  DK ++KQV+   GVPV P     +   
Sbjct: 83  YGFLSENQNFVEICAKHNIKFIGPSVEAMNLMSDKSKAKQVMQRAGVPVIPGSDGALAGA 142

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQLLIEQ 170
                    I  P ++K   GG   G+ V++ ++ +      + S          + +E+
Sbjct: 143 EAAKKLAKEIGYPVILKAAAGGGGRGMRVVENEKDLEKAYWSAESEAMTAFGDGTMYMEK 202

Query: 171 YV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           Y+ +   +   V+GD+  +V  +            K             +       +  
Sbjct: 203 YIQNPRHIEVQVIGDSFGNVIHVGERDCSMQRRHQK----LIEESPAILLDEKTRTRLHE 258

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            A  A +AIG  G    +FL D  +   +++E+N 
Sbjct: 259 TAIKAAKAIGYEGAGTFEFLVDK-NLDFYFIEMNT 292


>gi|57238340|ref|YP_179468.1| biotin carboxylase [Campylobacter jejuni RM1221]
 gi|57167144|gb|AAW35923.1| acetyl-CoA carboxylase, biotin carboxylase [Campylobacter jejuni
           RM1221]
 gi|315058775|gb|ADT73104.1| acetyl-CoA carboxylase, biotin carboxylase [Campylobacter jejuni
           subsp. jejuni S3]
          Length = 443

 Score = 89.0 bits (220), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 41/215 (19%), Positives = 78/215 (36%), Gaps = 14/215 (6%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVN 114
           +G   E+     I     I +    + A  L  DK ++KQV+   GVPV P     +   
Sbjct: 83  YGFLSENQNFVEICAKHNIKFIGPSVEAMNLMSDKSKAKQVMQRAGVPVIPGSDGALAGA 142

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQLLIEQ 170
                    I  P ++K   GG   G+ V++ ++ +      + S          + +E+
Sbjct: 143 EAAKKLAKEIGYPVILKAAAGGGGRGMRVVENEKDLEKAYWSAESEAMTAFGDGTMYMEK 202

Query: 171 YV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           Y+ +   +   ++GD+  +V  +            K             +       +  
Sbjct: 203 YIQNPRHIEVQIIGDSFGNVIHVGERDCSMQRRHQK----LIEESPAILLDEKTRTRLHE 258

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            A  A +AIG  G    +FL D  +   +++E+N 
Sbjct: 259 TAIKAAKAIGYEGAGTFEFLVDK-NLDFYFIEMNT 292


>gi|87125313|ref|ZP_01081159.1| acetyl-CoA carboxylase, biotin carboxylase [Synechococcus sp.
           RS9917]
 gi|86167082|gb|EAQ68343.1| acetyl-CoA carboxylase, biotin carboxylase [Synechococcus sp.
           RS9917]
          Length = 447

 Score = 89.0 bits (220), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 72/220 (32%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     I     I +      A     DK  +K  +   GVP  P    
Sbjct: 78  AIHPGYGFLAENDRFAEICRDHGITFVGPSPHAIRSMGDKATAKSTMQRVGVPTVPGSEG 137

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSWNHGDQ 165
            +       +    +  P +IK   GG   G+ ++     +         ++ +      
Sbjct: 138 LLATPEEAAELAAEMGYPVMIKATAGGGGRGMRLVPGPNQLQSLFKAAQGEAEAAFGNPG 197

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           L +E+++D    +   V+ D   +V  +            K             +  ++ 
Sbjct: 198 LYMEKFIDRPRHVEVQVLADRHGNVVHLGERDCSIQRRHQKLL----EEAPSPALDPELR 253

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +   A  A ++I   G    +FL D      +++E+N 
Sbjct: 254 RRMGEAAVAAARSIQYEGAGTVEFLLDRNGG-FYFMEMNT 292


>gi|283954910|ref|ZP_06372426.1| acetyl-CoA carboxylase, biotin carboxylase [Campylobacter jejuni
           subsp. jejuni 414]
 gi|283793750|gb|EFC32503.1| acetyl-CoA carboxylase, biotin carboxylase [Campylobacter jejuni
           subsp. jejuni 414]
          Length = 443

 Score = 89.0 bits (220), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 42/215 (19%), Positives = 79/215 (36%), Gaps = 14/215 (6%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVN 114
           +G   E+     I     I +    + A  L  DK ++KQV+   GVPV P     +   
Sbjct: 83  YGFLSENQNFVEICTKHNIKFIGPSVEAMNLMSDKSKAKQVMQRAGVPVIPGSDGALAGA 142

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQLLIEQ 170
                    I  P ++K   GG   G+ V+++++ +      + S          + +E+
Sbjct: 143 EAAKKLAKEIGYPVILKAAAGGGGRGMRVVEQEKELEKAYWSAESEAMTAFGDGTMYMEK 202

Query: 171 YV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           Y+ +   +   V+GD+  +V  +            K             +       +  
Sbjct: 203 YIQNPRHIEVQVIGDSFGNVIHMGERDCSMQRRHQK----LIEESPAILLDEKTRTRLHE 258

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            A  A +AIG  G    +FL D  +   +++E+N 
Sbjct: 259 TAIKAAKAIGYEGAGTFEFLVDK-NLDFYFIEMNT 292


>gi|329919624|ref|ZP_08276613.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus iners
           SPIN 1401G]
 gi|328937429|gb|EGG33851.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus iners
           SPIN 1401G]
          Length = 1055

 Score = 89.0 bits (220), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 47/297 (15%), Positives = 106/297 (35%), Gaps = 38/297 (12%)

Query: 22  CASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ--- 69
           C  AL+  G+K   I         D   S  L    +  +   N++     E  ++Q   
Sbjct: 577 CVKALQKLGYKAIVINSNPETVSTDFSISDKLYFEPITLEDVLNIVDIEKPEGVIIQFGA 636

Query: 70  -------AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL--VNRFTMDS 120
                  A L+   +    + +     + D+    QV+ + G+     +     +  +D+
Sbjct: 637 QTAINLAAGLKEHGVKILGTDVEDINRAEDREEFDQVIKNLGLKQPKGLTSTTRQGVIDA 696

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +++P        + ++  +  +   L  ++   +   +L++ Y+DG E    
Sbjct: 697 AIKIGYPVLVRPSYVLGGKAMEIVYNEAELGEYLDNNAYITNDHPILVDDYLDGKECDVD 756

Query: 181 VMGDAS---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQ 236
            + D     +      V  +  +S        +S  V P +    DI +++  +      
Sbjct: 757 AISDGVDILIPGIMEHVEHAGVHS-------GDSMAVYPPQSFSDDIQQKICEVTRKLAI 809

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           A+ C+GI    F+       V+ +E+N +   T     P ++   G    ++   ++
Sbjct: 810 ALKCQGIMNIQFIVR--DNDVYVIEVNPRASRT----VPFLSKITGIEMVQVATKII 860



 Score = 72.8 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 50/323 (15%), Positives = 108/323 (33%), Gaps = 48/323 (14%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI---------DVD------------RSVGLV 45
           G ++E + S   G     AL + G++V  +         D +             ++  +
Sbjct: 21  GQAAEFDYS---GTQACLALREEGYEVILVNSNPATIMTDTEIADKVYLEPLTVEALTRI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +    PD     L G  G +  +      IL+ L I    + + +   + D+   K++  
Sbjct: 78  IYQEYPDAILPTLGGQNGLNMALALSKTGILDKLNIELLGTKLKSIEQAEDREEFKKLCK 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G PV PS+ V+     +     I  P +++P       G  +    + +   + +   
Sbjct: 138 QLGEPVPPSLTVHNAEDALAFAEKIGYPIIVRPAFTMGGTGGGICNNRKELATVVARGLD 197

Query: 160 WNHGDQLLIEQYVDG---IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216
            +   + LIE+ + G   IE         +  +            +     + +S    P
Sbjct: 198 LSPVTECLIEKSIAGYKEIEFEVMRDCTDNCMIVCCMENFDPVGIH-----TGDSIVFSP 252

Query: 217 AK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV-------QPGM 268
           ++ +    Y+ ++  +    +A+   G        +P S     +E+N            
Sbjct: 253 SQTLSDKEYQMLRDCSLNLIRALKIEGGCNVQLALNPNSFDYDVIEVNPRVSRSSALASK 312

Query: 269 TPVSIFPEMAA--YAGYSFRELL 289
                  +MAA    G +  E++
Sbjct: 313 ATGYPIAKMAAKIAVGMTLDEII 335


>gi|288555268|ref|YP_003427203.1| acetyl-CoA carboxylase biotin carboxylase subunit [Bacillus
           pseudofirmus OF4]
 gi|288546428|gb|ADC50311.1| acetyl-CoA carboxylase biotin carboxylase subunit [Bacillus
           pseudofirmus OF4]
          Length = 453

 Score = 89.0 bits (220), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 32/198 (16%), Positives = 76/198 (38%), Gaps = 14/198 (7%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ----HLISPPYVIK 131
            + +        A    K+ +++ + + GVPV P I      +D      + I  P ++K
Sbjct: 99  GLVFIGPSPEVIAKMGSKIEARKAMEAAGVPVVPGIEHALRDVDEAVEVANNIGYPVMLK 158

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQLLIEQYV-DGIELTCGVMGDAS 186
              GG  +G+ +++ ++           ++ S+     + +E+Y+ +   +   V+ D  
Sbjct: 159 ASAGGGGIGMQIVRNEEECRKAFAGNQTRAQSFFGDGAMFVEKYIANPRHIEIQVLADQK 218

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRS 246
            +   I            K             +  +  +++  +A  A +AIG       
Sbjct: 219 GNTVYIWERDCSVQRRHQK----VVEEAPSPFLDEETRRQMGEMAVTAAKAIGYANAGTI 274

Query: 247 DFLFDPLSRKVFWLEINV 264
           + L D  +++ ++LE+N 
Sbjct: 275 ECLVDE-NKEFYFLEMNT 291


>gi|153836703|ref|ZP_01989370.1| 3-methylcrotonyl-CoA carboxylase alpha chain [Vibrio
           parahaemolyticus AQ3810]
 gi|149750052|gb|EDM60797.1| 3-methylcrotonyl-CoA carboxylase alpha chain [Vibrio
           parahaemolyticus AQ3810]
          Length = 686

 Score = 89.0 bits (220), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 41/221 (18%), Positives = 80/221 (36%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+  +        I +      A      K ++K ++S   VP+ P    
Sbjct: 77  AIHPGYGFLSENPKLAKACSENGIVFIGPSTNAIEAMGSKSQAKAIMSEANVPLVPGYHG 136

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
              +++        I  P ++K  +GG   G+ V+     +PL +  +           Q
Sbjct: 137 TDNSVEHLLTEAEKIGYPVMLKATQGGGGKGMRVVNSAAELPLAIDGAQREALSSFGDKQ 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           LL+E+ +     +   V  D   +   ++           K          PA  +  ++
Sbjct: 197 LLVEKCILQPRHVEIQVFADQHGNCVYLSDRDCSIQRRHQK-----VVEEAPAPGLGDEL 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            K++   A  A QAI   G    +FL D    + +++E+N 
Sbjct: 252 RKQMGEAAVHAAQAIDYVGAGTVEFLLDSR-GEFYFMEMNT 291


>gi|294650446|ref|ZP_06727806.1| urea carboxylase [Acinetobacter haemolyticus ATCC 19194]
 gi|292823666|gb|EFF82509.1| urea carboxylase [Acinetobacter haemolyticus ATCC 19194]
          Length = 1206

 Score = 89.0 bits (220), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 34/233 (14%), Positives = 74/233 (31%), Gaps = 13/233 (5%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
             +         +  F   +G   E        E   I +             K R++++
Sbjct: 69  EKLIQAAKQTGAEAIFPG-YGFLSESADFSRACEENNIAFMGPTAEQILEFGLKHRAREL 127

Query: 100 VSSCGVPVCPSILVN---RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL- 155
            ++  VP+ P   +       + +   I  P ++K   GG  +G+      Q++      
Sbjct: 128 AAAANVPMTPGTGLLDSLEEALTAADRIGYPIMLKSTAGGGGIGLTRCDTPQALTNAYES 187

Query: 156 ---QSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
                  +     + IE ++D    +   + GD    V               K      
Sbjct: 188 VKRLGEQFFKDAGVFIECFIDKARHVEVQIFGDGKGQVVAFGERDCSLQRRNQK----VV 243

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
                A +P    K++ + A    +++  R     +F++D    + ++LE+N 
Sbjct: 244 EETPAANLPEATRKKLHQAAIELGKSVNYRSAGTVEFIYDANRDEFYFLEVNT 296


>gi|210623079|ref|ZP_03293566.1| hypothetical protein CLOHIR_01516 [Clostridium hiranonis DSM 13275]
 gi|210153882|gb|EEA84888.1| hypothetical protein CLOHIR_01516 [Clostridium hiranonis DSM 13275]
          Length = 450

 Score = 89.0 bits (220), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 38/236 (16%), Positives = 83/236 (35%), Gaps = 21/236 (8%)

Query: 41  SVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSK 97
           ++  +   L+ D     +H  FG   E+       +   I +         L  DK +++
Sbjct: 67  NILYIAEKLECD----AIHPGFGFLSENPEFVRRCKEKNIIFIGPSEEQMVLMGDKSKAR 122

Query: 98  QVVSSCGVPVCPS---ILVNRFTMDS-QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL- 152
           + +   GVPV P    +L ++         I  P +IK   GG   G+ ++ + + +   
Sbjct: 123 RTMQKLGVPVVPGSKAVLKDKEEAKKMAEEIGYPVMIKASAGGGGRGMRIVHQPEDLEKS 182

Query: 153 ---DLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS 208
                 ++ S+     L +E+++ +   +   V GD   +   +            K   
Sbjct: 183 FEIAKSEAISYFKNGDLYMEKFIQNPRHIEVQVFGDKFGNAIHLGERDCSMQRRNQKMI- 241

Query: 209 LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
                     +  +  K +   A  A +     G    +F+ D   +  +++E+N 
Sbjct: 242 ---EESPSCYLNDEERKGLYESALKAVKGTNYEGAGTVEFIVDK-DKNFYFIEMNT 293


>gi|111023059|ref|YP_706031.1| acetyl-CoA carboxylase biotin carboxylase subunit [Rhodococcus
           jostii RHA1]
 gi|110822589|gb|ABG97873.1| acetyl-CoA carboxylase biotin carboxylase subunit [Rhodococcus
           jostii RHA1]
          Length = 672

 Score = 89.0 bits (220), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 79/221 (35%), Gaps = 19/221 (8%)

Query: 58  LHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
           +H  +G   E+           I +      A  +  DK+ +K  V+   VPV P I   
Sbjct: 83  IHPGYGFLSENSKFAGACADAGIAFLGPSAHAIEVMGDKITAKNAVAKFDVPVVPGIARP 142

Query: 115 RFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGDQ 165
             + D    +   I  P ++KP  GG   G+ ++++  ++   L       +S++   D 
Sbjct: 143 GLSDDELIAAAGDIGYPVLVKPSAGGGGKGMRLVEEPGALAEALRSARREAASAFG-DDT 201

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           L +E++V     +   ++ D   +V  +   +        K             +     
Sbjct: 202 LFLERFVLRPRHIEVQILADGHGNVVHLGERECSLQRRHQK----VIEEAPSPLLDEATR 257

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLS-RKVFWLEINV 264
             +   A    +++   G    +F+       + F++E+N 
Sbjct: 258 ARIGEAACNTARSVDYSGAGTVEFIVSADKPDEFFFMEMNT 298


>gi|324998687|ref|ZP_08119799.1| acetyl/propionyl-CoA carboxylase, biotin carboxylase subunit fused
           with biotin carboxyl carrier subunit [Pseudonocardia sp.
           P1]
          Length = 513

 Score = 89.0 bits (220), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 48/219 (21%), Positives = 77/219 (35%), Gaps = 17/219 (7%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI----LVN 114
           +G   E+       E   I +      A     DK+R+KQ V+  GVPV P      L +
Sbjct: 82  YGFLSENTAFATACEQAGIAFVGPPSSAIEAMGDKIRAKQTVAKAGVPVVPGSDGAGLSD 141

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQLLIEQ 170
                    I  P ++KP  GG   G+  +   + +   +  +          D LL+E+
Sbjct: 142 DELTAVVADIGYPVLLKPSAGGGGKGMREVHSPEGLADAIAGARREARGSFGDDTLLVER 201

Query: 171 YV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
            V     +   VM DA   V  +   +        K           A +      E+ R
Sbjct: 202 LVTTPRHIEIQVMADAHGGVVHLGERECSLQRRHQKII----EEAPSALLTDAQRAEMGR 257

Query: 230 LAFLAHQAIGCRGISRSDFLFD----PLSRKVFWLEINV 264
            A  A +A+G  G    +F+          + F+LE+N 
Sbjct: 258 AACEAARAVGYTGAGTVEFIVSGDRAASDLEFFFLEMNT 296


>gi|296808731|ref|XP_002844704.1| methylcrotonoyl-CoA carboxylase subunit alpha [Arthroderma otae CBS
           113480]
 gi|238844187|gb|EEQ33849.1| methylcrotonoyl-CoA carboxylase subunit alpha [Arthroderma otae CBS
           113480]
          Length = 712

 Score = 89.0 bits (220), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 55/287 (19%), Positives = 97/287 (33%), Gaps = 44/287 (15%)

Query: 13  EVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNV--------------- 57
           E++L  G+         G +V+ +  D       A   P  AFN+               
Sbjct: 48  EIALRVGRTAGQH----GIRVTTLYTDPDAHAQHALSSP-FAFNLGETSAYLDGDRIIEI 102

Query: 58  --------LHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP 106
                   +H  +G   E+           + +      A     DK RSK+++++ GVP
Sbjct: 103 AKREGCKGIHPGYGFLSENAGFAKKCTDAGLIFIGPPPSAIDAMGDKSRSKEIMTAAGVP 162

Query: 107 VCPSILVNRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
             P        ++        I  P +IK +KGG   G+ + +        L  + S   
Sbjct: 163 CVPGYHGTNQDVNFLAAEAEKIKYPVLIKAVKGGGGKGMRIARSAAEFQDQLKSAKSEAM 222

Query: 163 ----GDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
                D +LIE+Y+     +   V  D   +   +            K            
Sbjct: 223 SSFGDDTMLIEKYIITPRHIEVQVFADQHGNSVALGERDCSVQRRHQKVL----EESPAP 278

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +P    K++   A  A  A+G  G    +F+FD  + + F++E+N 
Sbjct: 279 HLPEATRKDLWAKARDAALAVGYEGAGTVEFIFDNDTGEFFFMEMNT 325


>gi|326382655|ref|ZP_08204346.1| pyruvate carboxylase [Gordonia neofelifaecis NRRL B-59395]
 gi|326198774|gb|EGD55957.1| pyruvate carboxylase [Gordonia neofelifaecis NRRL B-59395]
          Length = 1131

 Score = 89.0 bits (220), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 46/247 (18%), Positives = 88/247 (35%), Gaps = 18/247 (7%)

Query: 28  DAGFKVS-QIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           + G  V   +DVD  +  V      D  +   +G   E+  +    E+  I +       
Sbjct: 53  EPGHPVRAYLDVDE-IIRVAKESGADAVYPG-YGFLSENPELARACEINGITFVGPAAEV 110

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSI---LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIV 143
             L+ +K R+     + G+PV  S       R  +D+   +  P  +K + GG   G+  
Sbjct: 111 LQLTGNKSRAIAEAKAAGLPVLASTEPSTDPRALVDAGRAMKFPVFVKAVSGGGGRGMRR 170

Query: 144 IKKDQSIPLDLLQS-----SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD 198
           +     +P  L ++     S++  G   + +  +    +   V GD S DV  +      
Sbjct: 171 VDDPALLPAALEEASREAESAFGDGAVYIEQAVIAPRHIEVQVFGDGSGDVVHLYE---- 226

Query: 199 FYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
                ++          PA  +P +I   +   A    + IG       ++L D      
Sbjct: 227 -RDCSVQRRHQKVIEQAPAPDLPAEIRDRMCADAVAYAKHIGYSCAGTVEYLLDG-DGDY 284

Query: 258 FWLEINV 264
            ++E+N 
Sbjct: 285 VFIEMNP 291


>gi|57505848|ref|ZP_00371773.1| biotin carboxylase Cj1290c [Campylobacter upsaliensis RM3195]
 gi|57015878|gb|EAL52667.1| biotin carboxylase Cj1290c [Campylobacter upsaliensis RM3195]
          Length = 443

 Score = 89.0 bits (220), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 42/215 (19%), Positives = 77/215 (35%), Gaps = 14/215 (6%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVN 114
           +G   E+     I     + +    + A  L  DK ++KQV+   GVPV P     +   
Sbjct: 83  YGFLSENQNFVEICAKHNLKFIGPSVEAMNLMSDKSKAKQVMQRAGVPVIPGSDGALAGA 142

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQLLIEQ 170
                    I  P ++K   GG   G+ V+  ++ +      + S          + +E+
Sbjct: 143 EAAKKLAKKIGYPVILKAAAGGGGRGMRVVDNEKDLEKAYWSAESEAMTAFGDGTMYMEK 202

Query: 171 YV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           Y+ +   +   V+GD+  +V  I            K             +       +  
Sbjct: 203 YIQNPRHIEVQVVGDSFGNVIHIGERDCSMQRRHQK----LIEESPAILLDEKTRARLHE 258

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            A  A +AIG  G    +FL D  +   +++E+N 
Sbjct: 259 TAVKAAKAIGYEGAGTFEFLVDK-NLDFYFIEMNT 292


>gi|225572496|ref|ZP_03781360.1| hypothetical protein RUMHYD_00793 [Blautia hydrogenotrophica DSM
           10507]
 gi|225040036|gb|EEG50282.1| hypothetical protein RUMHYD_00793 [Blautia hydrogenotrophica DSM
           10507]
          Length = 587

 Score = 89.0 bits (220), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 32/222 (14%), Positives = 80/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+       E   I +        +   DK++SK V    GV   P +  
Sbjct: 80  AIHPGYGFLSENRDFAKQCEEAGITFIGPTADMMSRVGDKIQSKLVAHKAGVGTVPGVDE 139

Query: 112 --LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS-----SSWNHGD 164
                +  +        P ++K   GG   G+ ++++++ +  +   +      ++   D
Sbjct: 140 AIKSEKDAIAFARSCGYPVMLKASAGGGGRGMRIVREEKDLLAEFNNAQSEARKAFGIDD 199

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + IE+Y++    +   V+GD   ++  +           ++          P++ +   
Sbjct: 200 -IFIEKYIENPKHIEVQVLGDEYGNLVHLYE-----RDCSVQRRHQKVIEFTPSQILTQA 253

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             + +   A    + +  +     +FL D      +++E+N 
Sbjct: 254 QREAICEDALKIAREVNYKSAGTVEFLLDNDGNH-YFIEMNT 294


>gi|167748875|ref|ZP_02421002.1| hypothetical protein ANACAC_03649 [Anaerostipes caccae DSM 14662]
 gi|167651845|gb|EDR95974.1| hypothetical protein ANACAC_03649 [Anaerostipes caccae DSM 14662]
          Length = 1153

 Score = 89.0 bits (220), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 41/244 (16%), Positives = 91/244 (37%), Gaps = 26/244 (10%)

Query: 35  QIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSM 91
            +D+ +++  +      D     +H  +G   E+       E   I +            
Sbjct: 65  YLDI-KTIIRIAKEKNVD----AIHPGYGFLSENPEFVDACERHGITFIGPTSDIMRAMG 119

Query: 92  DKMRSKQVVSSCGVPVCPSI----LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147
           DK+ SKQ+     VP+ P +       +  ++    +  P ++K   GG   G+ ++   
Sbjct: 120 DKISSKQMAIKADVPIIPGVDHAVYSEKEVIEIAEKVGYPVMLKASNGGGGRGMRIVHTA 179

Query: 148 QSIPLDLLQSS-----SWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYS 201
           + +P +  ++      ++   DQ+ IE+Y+     +   ++GD   +V  +         
Sbjct: 180 EDMPKEYAEARDESKKAFG-DDQIFIEKYLKSPKHIEVQIIGDNYGNVVHLY-----DRD 233

Query: 202 YELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260
             ++          PA  IP +  K +   +    + +G R     +FL D      +++
Sbjct: 234 CSVQRRHQKVVEYAPAFSIPEETRKVIFDSSLRLAKTVGYRNAGTLEFLVDA-DNNPYFI 292

Query: 261 EINV 264
           E+N 
Sbjct: 293 EMNP 296


>gi|193872940|gb|ACF23160.1| D-alanine-D-alanine ligase [Streptococcus oralis]
 gi|193872974|gb|ACF23177.1| D-alanine-D-alanine ligase [Streptococcus mitis]
          Length = 96

 Score = 89.0 bits (220), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 30/96 (31%), Positives = 50/96 (52%), Gaps = 2/96 (2%)

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNST 212
               ++ +  ++L+EQ V+  E+  G++G+  +  T     V    FY Y+ KY     T
Sbjct: 1   ALKLAFQYDSRVLVEQGVNAREIEIGLLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKIT 60

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
             +PAKI  D+   +++ A  A +AIG  G+SR DF
Sbjct: 61  MDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDF 96


>gi|121997210|ref|YP_001001997.1| pyruvate carboxylase [Halorhodospira halophila SL1]
 gi|121588615|gb|ABM61195.1| pyruvate carboxylase [Halorhodospira halophila SL1]
          Length = 1147

 Score = 89.0 bits (220), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 84/222 (37%), Gaps = 20/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+  +    E   I +            DK  +++V    GVPV P+  V
Sbjct: 80  AVHPGYGLLSENPELVDACEAAGITFIGPRADTMRALGDKASARRVAIEAGVPVIPASEV 139

Query: 114 NRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-----SSSWNHGD 164
               +++       I  P ++K   GG   G+  I++ + +   +L+      +++  G+
Sbjct: 140 LGDDIEAARRWADEIGYPMMLKASWGGGGRGMRPIREPEELEARVLEGRREAEAAFGSGE 199

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
             L E+ ++    +   V+GD     T   +         ++  +       PA  +   
Sbjct: 200 GYL-EKMIERARHVEVQVLGD-----THGGLYHLFERDCTVQRRNQKVVERAPAPYLTEA 253

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              EV  L     + +G +     +FL D  +   +++E+N 
Sbjct: 254 QRAEVCDLGLKVARHVGYQNAGTVEFLMDMDTDTFYFIEVNP 295


>gi|83414067|dbj|BAE53824.1| D-alanine:D-alanine ligase [Streptococcus oralis]
          Length = 96

 Score = 89.0 bits (220), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 30/96 (31%), Positives = 49/96 (51%), Gaps = 2/96 (2%)

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNST 212
               ++ +  ++L+EQ V+  E+  G++G+  +  T     V    FY Y+ KY     T
Sbjct: 1   ALELAFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKIT 60

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
             +PAKI  D+   ++  A  A +AIG  G+SR DF
Sbjct: 61  MDIPAKISDDVVAVMRYNAETAFRAIGGLGLSRCDF 96


>gi|116624721|ref|YP_826877.1| pyruvate carboxylase [Candidatus Solibacter usitatus Ellin6076]
 gi|116227883|gb|ABJ86592.1| pyruvate carboxylase [Candidatus Solibacter usitatus Ellin6076]
          Length = 1174

 Score = 89.0 bits (220), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 80/221 (36%), Gaps = 18/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+  +    E   I +         L  DK  ++++    G+P  P    
Sbjct: 106 AIHPGYGFLSENPALPRACERAGITFVGPSAELLDLLGDKTAARRLAQKAGIPRVPGTEE 165

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK----DQSIPLDLLQSSSWNHGDQ 165
            +   +        I  P +IK   GG   G+ V+ K       +     +S++    D 
Sbjct: 166 AVTSPKQAEKIAATIGYPLIIKAAFGGGGRGMRVVDKAPDFAGKLEEARRESAAAFGNDA 225

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDI 223
           + +E++V     +   ++GD   ++  +           ++        V PA  +   I
Sbjct: 226 VFLERFVRRAKHIEVQILGDRHGNILHLYE-----RDCSVQRRHQKVVEVAPAVGLDPKI 280

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             ++   A    +A G       +FL D  S + F++E+N 
Sbjct: 281 RAQLADAAVTLARAAGYTNAGTVEFLVDADSGEWFFIEVNP 321


>gi|115360498|ref|YP_777635.1| pyruvate carboxylase [Burkholderia ambifaria AMMD]
 gi|115285826|gb|ABI91301.1| pyruvate carboxylase [Burkholderia ambifaria AMMD]
          Length = 1169

 Score = 89.0 bits (220), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 44/246 (17%), Positives = 93/246 (37%), Gaps = 25/246 (10%)

Query: 33  VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLV-QAILELLEIPYTHSGILASA 88
            + +D+D  +  V    K D     +H  +G   E+    QA+++   I +         
Sbjct: 62  AAYLDID-DILRVARQAKVD----AIHPGYGFLSENPDFAQAVID-AGIRWIGPSPDVMR 115

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSLGIIVI 144
              +K+ ++    + GVPV P+       +D+       +  P ++K   GG   G+ V+
Sbjct: 116 TLGNKVAARNAAIAAGVPVMPATAPLPDDLDACKVLAAEVGYPLMLKASWGGGGRGMRVL 175

Query: 145 KKDQSI----PLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDF 199
           +  Q +    P+   ++ +    D++ +E+ V     +   V+GD    V  +       
Sbjct: 176 ENAQDLETLLPVARREALAAFGNDEVYVEKLVRNARHVEVQVLGDLHGTVVHLYERDCTV 235

Query: 200 YSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
                K          PA  +  +    +   A    +A+G       +FL D  + + +
Sbjct: 236 QRRNQK-----VVERAPAPYLDRESRHALCESALRLMRAVGYTHAGTVEFLMDADTGQFY 290

Query: 259 WLEINV 264
           ++E+N 
Sbjct: 291 FIEVNP 296


>gi|226313446|ref|YP_002773340.1| biotin carboxylase [Brevibacillus brevis NBRC 100599]
 gi|226096394|dbj|BAH44836.1| probable biotin carboxylase [Brevibacillus brevis NBRC 100599]
          Length = 451

 Score = 89.0 bits (220), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 32/199 (16%), Positives = 75/199 (37%), Gaps = 14/199 (7%)

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI----SPPYVI 130
             + +            DK+ +++++ + GVPV P       + D   +I      P ++
Sbjct: 97  AGLLFIGPTPEVIGQMGDKLTARRMMEAAGVPVVPGCEQAIDSPDEAAVIAVSIGYPVML 156

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQLLIEQYVD-GIELTCGVMGDA 185
           K   GG  +G+ + + +  +         ++ ++   D + +E+YV+    +   V+ D 
Sbjct: 157 KASAGGGGIGMHICRDEAELRQAYQSAKGRAKAYFGNDAMYLEKYVERPHHIEVQVVADQ 216

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
             +V  +   +        K             +     + +   A  A +A+G  G+  
Sbjct: 217 DGNVIHLLERECSIQRRHQKVL----EESPSPFLSTATRELLCDAAVTAAKAVGYSGVGT 272

Query: 246 SDFLFDPLSRKVFWLEINV 264
            +F+ D      ++LE+N 
Sbjct: 273 VEFIVDEQKN-FYFLEMNT 290


>gi|240144639|ref|ZP_04743240.1| urea carboxylase [Roseburia intestinalis L1-82]
 gi|257203356|gb|EEV01641.1| urea carboxylase [Roseburia intestinalis L1-82]
          Length = 1193

 Score = 89.0 bits (220), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 38/257 (14%), Positives = 92/257 (35%), Gaps = 32/257 (12%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       E   I +         L   K  ++ + +   VP+ P   +
Sbjct: 77  AIHPGYGFLSENTDFAKECEENGIKFIGPDSEQIKLFGLKHSARALAAKADVPLLPGTGL 136

Query: 114 NRFTMDS---QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQL 166
                ++      I  P ++K   GG  +G+ +    + +          +++  +   +
Sbjct: 137 LSGVEEAVTEAEKIGYPVILKSTAGGGGIGMRICNSTEELRQAYDAVCHLAAANFNDAGV 196

Query: 167 LIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIY 224
            +E+YV     +   + G+   + T +A          ++  +       PA  +  ++ 
Sbjct: 197 FLEKYVTRSRHVEVQIFGNEYGETTALAE-----RDCSVQRRNQKVVEESPAPNLSDEVR 251

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
           +++   A    +    R     +FL+D  +   ++LE+N             +    G +
Sbjct: 252 EKMYAAAERLAKEASYRSAGTVEFLYDDQTEGFYFLEVNT-----------RLQVEHGIT 300

Query: 285 FR----ELLLWMVEDAS 297
                 +L+ WMV++A+
Sbjct: 301 EEVLGIDLVEWMVKEAA 317


>gi|39997117|ref|NP_953068.1| acetyl-CoA carboxylase, biotin carboxylase [Geobacter
           sulfurreducens PCA]
 gi|39984007|gb|AAR35395.1| acetyl-CoA carboxylase, biotin carboxylase [Geobacter
           sulfurreducens PCA]
 gi|298506130|gb|ADI84853.1| acetyl-CoA carboxylase, biotin carboxylase [Geobacter
           sulfurreducens KN400]
          Length = 446

 Score = 89.0 bits (220), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 77/220 (35%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+     I E   I +      +  +  DK+ ++Q V    VP+ P    
Sbjct: 77  AIHPGYGFLSENAAFAEICENCGITFIGPSSQSMRIMGDKISARQAVIKENVPILPGTKE 136

Query: 114 NRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
               ++        I  P +IK   GG   G+ ++    ++P     + +         +
Sbjct: 137 GVNDVNEAVKIAKKIGFPVIIKATAGGGGRGMKIVHSPAALPNAFATARAEAQAGFGNPE 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+Y +    +   VM D   +V  +            K             +   + 
Sbjct: 197 VYIEKYCEKPRHVEIQVMADKHGNVIHLGERDCSIQRRHQKII----EESPCPVMTPALR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K +   A  A +A+G   +   +FL D      +++E+N 
Sbjct: 253 KAMGDAAVRASKAVGYDSVGTVEFLVDK-DLNFYFMEMNT 291


>gi|330808407|ref|YP_004352869.1| biotin carboxylase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327376515|gb|AEA67865.1| Putative biotin carboxylase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 656

 Score = 89.0 bits (220), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 72/220 (32%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       E   I +      A  L   K R+K  +   GVP       
Sbjct: 79  AIHPGYGFLSENAGFAKACEAASIVFIGPSPEAIDLMGSKRRAKIAMIEAGVPCIAGYQG 138

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGD 164
                D        I  P +IK   GG   G+ ++++ + +   L  + S     +   +
Sbjct: 139 AAQDDDTLQREAGRIGYPLMIKASAGGGGRGMRLVQRAEDLLEQLRSARSEALHGFGSDE 198

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
            +L +  +D   +   + GD    +  +            K             +  D+ 
Sbjct: 199 LILEQALIDPRHVEVQIFGDHHGQLIHLGERDCSIQRRHQK----VIEEAPCPVMTADLR 254

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +   A    +A+   G    +FL      + ++LE+N 
Sbjct: 255 QAMGDAALKVGRAVKYVGAGTVEFLL-AADGRFYFLEMNT 293


>gi|307295123|ref|ZP_07574965.1| acetyl-CoA carboxylase, biotin carboxylase [Sphingobium
           chlorophenolicum L-1]
 gi|306879597|gb|EFN10815.1| acetyl-CoA carboxylase, biotin carboxylase [Sphingobium
           chlorophenolicum L-1]
          Length = 450

 Score = 89.0 bits (220), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 77/220 (35%), Gaps = 18/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     I+E   I +         +  DK+ +K+   + G+P+ P    
Sbjct: 78  AIHPGYGFLSENAQFAEIVEAHNIAFVGPKPEHIRIMGDKVEAKRTAGALGLPLVPGSDG 137

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSWNHGDQ 165
            +       +    I  P +IK   GG   G+ V+  +  +         ++ +    D 
Sbjct: 138 ALTSVEEAKEVAAKIGYPVLIKAASGGGGRGMKVVPSEDLLETSMKQAGSEAKAAFGDDT 197

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+Y+ +   +   V GD + +   +            K             +     
Sbjct: 198 VYMEKYLGNPRHIEFQVFGDGNGNAIHLGERDCSLQRRHQKVL----EEAPSPVLSAAER 253

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +  +   A   +G RG    +FL+     + +++E+N 
Sbjct: 254 DRMGEVVRKAMADMGYRGAGTIEFLW--EDGEFYFIEMNT 291


>gi|213964778|ref|ZP_03392977.1| acetyl-/propionyl-coenzyme A carboxylase alpha chain
           [Corynebacterium amycolatum SK46]
 gi|213952314|gb|EEB63697.1| acetyl-/propionyl-coenzyme A carboxylase alpha chain
           [Corynebacterium amycolatum SK46]
          Length = 695

 Score = 89.0 bits (220), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 77/220 (35%), Gaps = 17/220 (7%)

Query: 58  LHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI--- 111
           +H  +G   E+       E   I +      A     DK+ ++  V +  VP  P +   
Sbjct: 91  IHPGYGFLSENADFATACEEAGIEFIGPPASAINTMGDKISARAAVEARDVPTVPGLSRP 150

Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQL 166
            L +   +++   I  P +IKP  GG   G+  ++    +P  L  +          D L
Sbjct: 151 GLSDEDLIEAAPSIGFPVLIKPSAGGGGKGMHRVENAADLPAALATARREAAGAFGDDSL 210

Query: 167 LIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
            IE +VD    +   ++ D   +V  +   +        K             +  +   
Sbjct: 211 FIEHFVDTPRHIEVQILADKHGNVIHLGERECSLQRRHQK----VIEEAPSPLLDEETRS 266

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLS-RKVFWLEINV 264
            +   A  A +++G  G    +F+         F++E+N 
Sbjct: 267 AIGEAACDAARSVGYVGAGTVEFIVPAKDPSSFFFMEMNT 306


>gi|325913772|ref|ZP_08176133.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus iners
           UPII 60-B]
 gi|325476972|gb|EGC80123.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus iners
           UPII 60-B]
          Length = 1055

 Score = 89.0 bits (220), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 47/297 (15%), Positives = 106/297 (35%), Gaps = 38/297 (12%)

Query: 22  CASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ--- 69
           C  AL+  G+K   I         D   S  L    +  +   N++     E  ++Q   
Sbjct: 577 CVKALQKLGYKAIVINSNPETVSTDFSISDKLYFEPITLEDVLNIVDIEKPEGVIIQFGA 636

Query: 70  -------AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL--VNRFTMDS 120
                  A L+   +    + +     + D+    QV+ + G+     +     +  +D+
Sbjct: 637 QTAINLAAGLQEHGVKILGTDVEDINRAEDREEFDQVIKNLGLKQPKGLTSTTRQGVIDA 696

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +++P        + ++  +  +   L  ++   +   +L++ Y+DG E    
Sbjct: 697 AIKIGYPVLVRPSYVLGGKAMEIVYNEAELEEYLDNNAYITNDHPILVDDYLDGKECDVD 756

Query: 181 VMGDAS---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQ 236
            + D     +      V  +  +S        +S  V P +    DI +++  +      
Sbjct: 757 AISDGVDILIPGIMEHVEHAGVHS-------GDSMAVYPPQSFLDDIQQKICEVTRKLAI 809

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           A+ C+GI    F+       V+ +E+N +   T     P ++   G    ++   ++
Sbjct: 810 ALKCQGIMNIQFIVR--DNDVYVIEVNPRASRT----VPFLSKITGIEMVQVATKII 860



 Score = 73.2 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 50/323 (15%), Positives = 108/323 (33%), Gaps = 48/323 (14%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI---------DVD------------RSVGLV 45
           G ++E + S   G     AL + G++V  +         D +             ++  +
Sbjct: 21  GQAAEFDYS---GTQACLALREEGYEVILVNSNPATIMTDTEIADKVYLEPLTVETLTRI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +    PD     L G  G +  +      IL+ L I    + + +   + D+   K++  
Sbjct: 78  IYQEYPDAILPTLGGQNGLNMALALSKTGILDKLNIELLGTKLKSIEQAEDREEFKKLCK 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G PV PS+ V+     +     I  P +++P       G  +    + +   + +   
Sbjct: 138 QLGEPVPPSLTVHNAEDALAFAEKIGYPIIVRPAFTMGGTGGGICNNRKELATVVARGLD 197

Query: 160 WNHGDQLLIEQYVDG---IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216
            +   + LIE+ + G   IE         +  +            +     + +S    P
Sbjct: 198 LSPVTECLIEKSIAGYKEIEFEVMRDCTDNCMIVCCMENFDPVGIH-----TGDSIVFSP 252

Query: 217 AK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV-------QPGM 268
           ++ +    Y+ ++  +    +A+   G        +P S     +E+N            
Sbjct: 253 SQTLSDKEYQMLRDCSLNLIRALKIEGGCNVQLALNPNSFDYDVIEVNPRVSRSSALASK 312

Query: 269 TPVSIFPEMAA--YAGYSFRELL 289
                  +MAA    G +  E++
Sbjct: 313 ATGYPIAKMAAKIAVGMTLDEII 335


>gi|149186987|ref|ZP_01865295.1| AccC, acetyl-CoA carboxylase, biotin carboxylase [Erythrobacter sp.
           SD-21]
 gi|148829376|gb|EDL47819.1| AccC, acetyl-CoA carboxylase, biotin carboxylase [Erythrobacter sp.
           SD-21]
          Length = 449

 Score = 89.0 bits (220), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 78/220 (35%), Gaps = 18/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     I+E  +I +            DK+ +K+   + G+P+ P    
Sbjct: 78  AIHPGYGFLSENAKFAEIVEAHDIKWIGPKPEHIRTMGDKVEAKKTAGALGLPLVPGSDG 137

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSWNHGDQ 165
            +            I  P +IK   GG   G+ V + +  +         ++ +      
Sbjct: 138 AVATVEEARAIAAEIGFPVIIKAASGGGGRGMKVCESEDQLETLMKQAGSEAKAAFGDAT 197

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+Y+ D   +   V GD + +   +            K             +  +  
Sbjct: 198 VYIEKYLGDPRHIEFQVFGDGNGNAIHLGERDCSLQRRHQKVL----EEAPSPVLGEEDR 253

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +  +   A + +G RG    +FL+   + + +++E+N 
Sbjct: 254 MRMGEVCAQAMRDMGYRGAGTVEFLW--ENGEFYFIEMNT 291


>gi|326383714|ref|ZP_08205399.1| carbamoyl-phosphate synthase L chain ATP--binding protein [Gordonia
           neofelifaecis NRRL B-59395]
 gi|326197478|gb|EGD54667.1| carbamoyl-phosphate synthase L chain ATP--binding protein [Gordonia
           neofelifaecis NRRL B-59395]
          Length = 682

 Score = 88.6 bits (219), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 43/222 (19%), Positives = 84/222 (37%), Gaps = 19/222 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      L    I +      A A   DK+ ++  V+   VPV P I  
Sbjct: 86  AVHPGYGFLSENQQFAEALAEAGIVFIGPPASAIATMGDKITARDAVTERDVPVVPGISR 145

Query: 112 --LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL-----QSSSWNHGD 164
             L +R  +D+   +  P +IKP  GG   G+  +++   +   L+      +S++   D
Sbjct: 146 PGLSDRELIDAAEGVGFPVLIKPSAGGGGKGMHRVEEPAGLAEALVTARREAASAFG-DD 204

Query: 165 QLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            L +E +V     +   ++ D   +V  +   +        K           A +    
Sbjct: 205 TLFLEHFVLTPRHIEVQILADEHGNVIHLGERECSLQRRHQK----VIEEAPSALLDEAT 260

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLS-RKVFWLEINV 264
              +   A  A +++G  G    +F+    +    F++E+N 
Sbjct: 261 RARIGAAACDAARSVGYTGAGTVEFIVSAAAPEDFFFMEMNT 302


>gi|157736856|ref|YP_001489539.1| acetyl CoA carboxylase, biotin carboxylase subunit [Arcobacter
           butzleri RM4018]
 gi|315636024|ref|ZP_07891283.1| acetyl-CoA carboxylase, biotin carboxylase [Arcobacter butzleri
           JV22]
 gi|157698710|gb|ABV66870.1| acetyl CoA carboxylase, biotin carboxylase subunit [Arcobacter
           butzleri RM4018]
 gi|315479680|gb|EFU70354.1| acetyl-CoA carboxylase, biotin carboxylase [Arcobacter butzleri
           JV22]
          Length = 483

 Score = 88.6 bits (219), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 82/221 (37%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+       E   I +         L  DKM SK  +   GVPV      
Sbjct: 78  AIHPGYGFLSENADFARACEENGIIFIGPKPEHIELFGDKMASKVAMKKVGVPVLEGTDE 137

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS----IPLDLLQSSSWNHGDQ 165
            I+           I  P +IK   GG   G+ ++++++           ++  +    +
Sbjct: 138 PIIDIEEGAKIAKQIGFPVIIKAAFGGGGRGMRIVREEKDFKELFESASNEAKKYFGRGE 197

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDI 223
             IE+YV+    +   V+ D   +V  +            K        + P  ++  + 
Sbjct: 198 AFIEKYVENPRHIEIQVIADKYGNVLHLGERDCSIQRRHQK-----VIEIAPSPRLNNEA 252

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            KE+ R+A  A   +G   +   +FL DP    ++++E+N 
Sbjct: 253 RKELYRIATKAMFKLGYESVGTVEFLLDPDDN-IYFIEMNT 292


>gi|85708071|ref|ZP_01039137.1| AccC, acetyl-CoA carboxylase, biotin carboxylase [Erythrobacter sp.
           NAP1]
 gi|85689605|gb|EAQ29608.1| AccC, acetyl-CoA carboxylase, biotin carboxylase [Erythrobacter sp.
           NAP1]
          Length = 449

 Score = 88.6 bits (219), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 78/220 (35%), Gaps = 18/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     I+E  +I +            DK+++K+     G+P+ P    
Sbjct: 78  AIHPGYGFLSENAKFAEIVEAHDIAWIGPKPEHIRTMGDKVQAKKTAGELGLPLVPGSDG 137

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSWNHGDQ 165
            +            I  P +IK   GG   G+ V + +  +         ++ +      
Sbjct: 138 AVSDPEEAKKIAAEIGYPVIIKAASGGGGRGMKVCESEDKLETLMKQAGSEAKAAFGDAT 197

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+Y+ +   +   V GD + +   +            K             I  D  
Sbjct: 198 VYIEKYLGNPRHIEFQVFGDGNGNAIHLGERDCSLQRRHQKVL----EEAPSPVISDDER 253

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +  +   A + +G RG    +FL+   + + +++E+N 
Sbjct: 254 AAMGEVCSKAMRDMGYRGAGTIEFLW--ENGEFYFIEMNT 291


>gi|295666554|ref|XP_002793827.1| methylcrotonoyl-CoA carboxylase subunit alpha [Paracoccidioides
           brasiliensis Pb01]
 gi|226277480|gb|EEH33046.1| methylcrotonoyl-CoA carboxylase subunit alpha [Paracoccidioides
           brasiliensis Pb01]
          Length = 726

 Score = 88.6 bits (219), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 56/287 (19%), Positives = 100/287 (34%), Gaps = 44/287 (15%)

Query: 13  EVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNV--------------- 57
           E++L  G+  +      G +V+ +  D       A   P  +FNV               
Sbjct: 55  EIALRVGRTASQH----GIRVTTLYTDPDARAQHALSSP-FSFNVGETSAYLDGDRIIEI 109

Query: 58  --------LHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP 106
                   +H  +G   E+           + +      A     DK RSK+++++ GVP
Sbjct: 110 AKKEGCQGIHPGYGFLSENSTFAQKCTQAGLVFIGPPPKAIEAMGDKSRSKEIMTTAGVP 169

Query: 107 VCPSILVNRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
             P        MD        I  P +IK +KGG   G+ +    ++    L+ + S   
Sbjct: 170 CVPGYHGENQDMDFLEAEAERIKFPVLIKAVKGGGGKGMRIASSKETFRDQLISAKSEAM 229

Query: 163 G----DQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
                D +L+E+Y+     +   V  D   +   +            K            
Sbjct: 230 NSFGNDTMLVEKYITTPRHIEVQVFADKHGNCVALGERDCSIQRRHQKIL----EESPAP 285

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +P    K++   A  A  A+G  G    +F+FD  + + F++E+N 
Sbjct: 286 HLPEATRKDLWDKARAAALAVGYEGAGTVEFIFDNDTGEFFFMEMNT 332


>gi|291295928|ref|YP_003507326.1| acetyl-CoA carboxylase biotin carboxylase [Meiothermus ruber DSM
           1279]
 gi|290470887|gb|ADD28306.1| acetyl-CoA carboxylase, biotin carboxylase [Meiothermus ruber DSM
           1279]
          Length = 447

 Score = 88.6 bits (219), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 36/219 (16%), Positives = 80/219 (36%), Gaps = 17/219 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+     +     I +      +      K   +++ +   VP  P   V
Sbjct: 77  AIHPGYGFLAENPQFAEMCRDHGIVFIGPTPESMHSLGSKAGGREIAAKSNVPTVPGTGV 136

Query: 114 NRF---TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS--SSWNH--GDQL 166
            R     +++   I  P ++K   GG   G  V++  + +     Q+   + N+     L
Sbjct: 137 LRSVEEALEAAEQIGYPVLLKASAGGGGRGQKVVRSSEEMKTAFAQAQVEAQNYFSDPSL 196

Query: 167 LIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
           ++E+Y++    +   V+GD    V  I            K          P+++   + +
Sbjct: 197 ILEKYIELFRHVEVQVLGDGKGHVVHIGERDCSIQRRNQKL-----IEEAPSRLEEPLRQ 251

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           E+        + +  +G    +F+ DP     +++E+N 
Sbjct: 252 EILAAGVRLAKYVNYQGAGTLEFIVDP-DGNFYFMEMNT 289


>gi|295399981|ref|ZP_06809961.1| acetyl-CoA carboxylase, biotin carboxylase [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|294977760|gb|EFG53358.1| acetyl-CoA carboxylase, biotin carboxylase [Geobacillus
           thermoglucosidasius C56-YS93]
          Length = 450

 Score = 88.6 bits (219), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 79/220 (35%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       E   I +        A    K+ +++ +   GVP+ P I  
Sbjct: 77  AIHPGYGLLSENPEFVRRCEEEGIVFVGPKADVIAKMGSKIAARKTMEEAGVPIVPGISF 136

Query: 114 NRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
               +D        I  P ++K   GG  +G+ +++ ++ +         +++S+     
Sbjct: 137 PLKDVDEAARTAEHIGYPVMLKASAGGGGIGMQIVRNEEELRKAFEGNQKRAASFFGDGA 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+Y+ +   +   ++ D   +   +   +        K             +     
Sbjct: 197 MYLEKYIANPRHIEIQLLADEYGNCIYLWERECSIQRRHQK----VVEEAPSPFLDEKTR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +++   A  A + IG       +FL D      ++LE+N 
Sbjct: 253 RKIGETAVKAAKHIGYTNAGTMEFLVDEQKN-FYFLEMNT 291


>gi|237757185|ref|ZP_04585605.1| acetyl-CoA carboxylase, biotin carboxylase subunit
           [Sulfurihydrogenibium yellowstonense SS-5]
 gi|237690654|gb|EEP59842.1| acetyl-CoA carboxylase, biotin carboxylase subunit
           [Sulfurihydrogenibium yellowstonense SS-5]
          Length = 451

 Score = 88.6 bits (219), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 41/220 (18%), Positives = 83/220 (37%), Gaps = 14/220 (6%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS- 110
           D  +   +G   E+    AI E   I +         L+ DK ++++     GVP+ P  
Sbjct: 79  DAVYPG-YGFLAENPTFAAICERSNIKFIGPSSETIKLTGDKAQAREAAKKAGVPIIPGS 137

Query: 111 --ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS----IPLDLLQSSSWNHGD 164
             +   +  ++    I  P +IK   GG   G+ V   +Q     +PL   ++ S     
Sbjct: 138 PPVEELKEALEISSEIGYPVLIKAAAGGGGRGMRVAHNEQELARLLPLAQREAESSFGDR 197

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           ++ IE++++    +   ++ D   +V  +   +        K             I   I
Sbjct: 198 RVYIEKFIENPKHIEIQILADEFGNVIHLGERECSVQRRHQK----LIEESPSPFIDEKI 253

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            +E+   A    +A+   G    +F+ D      +++E+N
Sbjct: 254 RREMGEAAVKFAKAVNFTGAGTVEFIVDKNKN-FYFIEMN 292


>gi|83414025|dbj|BAE53803.1| D-alanine:D-alanine ligase [Streptococcus mitis]
          Length = 96

 Score = 88.6 bits (219), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 50/96 (52%), Gaps = 2/96 (2%)

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNST 212
               ++ +  ++L+EQ V+  E+  G++G+  +  T     V    FY Y+ KY     +
Sbjct: 1   ALKLAFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKIS 60

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
             +PAKI  D+   +++ A  A +AIG  G+SR DF
Sbjct: 61  MDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDF 96


>gi|261349379|ref|ZP_05974796.1| ATP-grasp domain protein [Methanobrevibacter smithii DSM 2374]
 gi|288861743|gb|EFC94041.1| ATP-grasp domain protein [Methanobrevibacter smithii DSM 2374]
          Length = 367

 Score = 88.6 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 43/191 (22%), Positives = 84/191 (43%), Gaps = 8/191 (4%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKG 135
           +IP   + + A  L+ DK+++K+  +  GVP     ++ +   +S+  I  P V+K  +G
Sbjct: 90  DIPVIAANVRAVRLTSDKIKTKEFYNEIGVPTPQYQILAKDDFESKLKIEFPVVLKQGQG 149

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195
                I V +    +         +   D  L E++++G E++  V+G     V    + 
Sbjct: 150 QGGKDIKVAESLDDVK------EYFEEFDHALCEKFIEGSEISIEVLGYNGEYVPLSPIY 203

Query: 196 KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255
           K +  +       LN     P  +       VQR A+   + +G  GI   DF+F    +
Sbjct: 204 KGE--TTLEGIHPLNKIKTAPCLVEGLDNNLVQRTAYKVAKNLGSDGIFEMDFMFSKDEQ 261

Query: 256 KVFWLEINVQP 266
           +++ +E+N +P
Sbjct: 262 QLYAIEVNTRP 272


>gi|67906489|gb|AAY82596.1| predicted acetyl-CoA carboxylase [uncultured bacterium
           MedeBAC35C06]
          Length = 449

 Score = 88.6 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 34/217 (15%), Positives = 75/217 (34%), Gaps = 18/217 (8%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
           +G   ED       E     +            DK+ +K +  S G+   P    +    
Sbjct: 82  YGFLAEDADFAEKCEKSGFKFIGPSAEIIRQMGDKITAKYLAESAGIQTVPGYKEDIPED 141

Query: 119 DS-----QHLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGDQLLIE 169
           +         I  P +IK   GG   G+ ++K +  +     + + ++ +    +++ +E
Sbjct: 142 EDSFKKIAADIGYPIMIKATAGGGGRGMRIVKSENELISSAQITMQEAKNAFGNEKIYLE 201

Query: 170 QYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEV 227
           ++++    +   V+GD   +   +            K          PA  +  D  KE 
Sbjct: 202 KFIENPRHVEVQVVGDGKGNAIHLGTRDCSMQRRHQK-----IIEEAPALNLDEDSLKET 256

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
                   + I   G    +FL+   + + +++E+N 
Sbjct: 257 LDACINLCKKIKYEGAGTLEFLY--ENNEFYFIEMNT 291


>gi|171316273|ref|ZP_02905495.1| pyruvate carboxylase [Burkholderia ambifaria MEX-5]
 gi|171098595|gb|EDT43394.1| pyruvate carboxylase [Burkholderia ambifaria MEX-5]
          Length = 1199

 Score = 88.6 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 45/246 (18%), Positives = 93/246 (37%), Gaps = 25/246 (10%)

Query: 33  VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLV-QAILELLEIPYTHSGILASA 88
            + +D+D  +  V    K D     +H  +G   E+    QA+++   I +         
Sbjct: 92  AAYLDID-DILRVARQSKVD----AIHPGYGFLSENPDFAQAVID-AGIRWIGPSPDVMR 145

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSLGIIVI 144
              +K+ ++    + GVPV P+       +D+       +  P ++K   GG   G+ V+
Sbjct: 146 TLGNKVAARNAAIAAGVPVMPATAPLPDDLDACRALAAEVGYPLMLKASWGGGGRGMRVL 205

Query: 145 KKDQSI----PLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDF 199
           +  Q +    P+   ++ +    D++ +E+ V     +   V+GD    V  +       
Sbjct: 206 ESAQDLETLLPVARREALAAFGNDEVYVEKLVRNARHVEVQVLGDLHGTVVHLYERDCTV 265

Query: 200 YSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
                K          PA  +  D    +   A    +A+G       +FL D  + + +
Sbjct: 266 QRRNQK-----VVERAPAPYLDHDGRHALCEAALRLMRAVGYTHAGTVEFLMDADTGQFY 320

Query: 259 WLEINV 264
           ++E+N 
Sbjct: 321 FIEVNP 326


>gi|108800596|ref|YP_640793.1| carbamoyl-phosphate synthase L chain, ATP-binding protein
           [Mycobacterium sp. MCS]
 gi|119869735|ref|YP_939687.1| carbamoyl-phosphate synthase L chain, ATP-binding [Mycobacterium
           sp. KMS]
 gi|108771015|gb|ABG09737.1| Carbamoyl-phosphate synthase L chain, ATP-binding protein
           [Mycobacterium sp. MCS]
 gi|119695824|gb|ABL92897.1| Carbamoyl-phosphate synthase L chain, ATP-binding protein
           [Mycobacterium sp. KMS]
          Length = 662

 Score = 88.6 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 84/221 (38%), Gaps = 17/221 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+    A L+  +I +    + A     DK+ +K  VS+ GVPV P +  
Sbjct: 78  AVHPGYGFLSENADFAAALQAADIVFIGPPVGAIQTMGDKIAAKAAVSAFGVPVVPGVSR 137

Query: 114 NRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
              T D        +  P ++KP  GG   G+ V+     +P  L+    ++++    D 
Sbjct: 138 PGLTDDDLIAGAGDVGFPVLVKPSAGGGGKGMRVVHDPAELPAALVSARREAAAAFGDDT 197

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           L +E++V +   +   V+ D   +V  +   +        K             +     
Sbjct: 198 LFLERFVLNPRHIEVQVLADGFGNVIHLGERECSLQRRHQK----VIEEAPSPLLDEATR 253

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLS-RKVFWLEINV 264
             +   A    +++   G    +F+       + F++E+N 
Sbjct: 254 ARIGAAACDTARSVDYAGAGTVEFIVSADRPDEFFFMEMNT 294


>gi|193873024|gb|ACF23202.1| D-alanine-D-alanine ligase [Streptococcus mitis]
          Length = 96

 Score = 88.6 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 30/96 (31%), Positives = 50/96 (52%), Gaps = 2/96 (2%)

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNST 212
               ++ +  ++L+EQ V+  E+  G++G+  +  T     V    FY Y+ KY     T
Sbjct: 1   ALKLAFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKIT 60

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
             +PAKI  D+   ++R +  A +AIG  G+SR DF
Sbjct: 61  MDIPAKISDDVVAVMRRNSETAFRAIGGLGLSRCDF 96


>gi|188996965|ref|YP_001931216.1| Carbamoyl-phosphate synthase L chain ATP-binding
           [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188932032|gb|ACD66662.1| Carbamoyl-phosphate synthase L chain ATP-binding
           [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 476

 Score = 88.6 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 80/220 (36%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+           I +        AL  DKM +K+ +   GVP+ P    
Sbjct: 79  AIHPGYGFLSENPEFAEYCVRQGIIFIGPKPEHIALFGDKMAAKKKMRELGVPILPGSDE 138

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSWNHGDQ 165
            I   +   +  + I  P ++K   GG   G+ +++ +            ++  +     
Sbjct: 139 PISDMKKAKEIANEIGYPVILKAAYGGGGRGMRIVRSESEFETLFQSAYNEAKKFFGKGD 198

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+YV+    +   +M D   +V  +            K             +  ++ 
Sbjct: 199 VFIEKYVENPRHIEIQIMADKYGNVVHLGERDCSIQRRHQKI----VEIARSPSLDEEVK 254

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           KE+ R +  A   +G   +   ++L D  +   +++E+N 
Sbjct: 255 KELYRTSVKAMFKVGYENVGTIEYLVDE-NNNFYFIEMNT 293


>gi|270260920|ref|ZP_06189193.1| urea carboxylase [Serratia odorifera 4Rx13]
 gi|270044404|gb|EFA17495.1| urea carboxylase [Serratia odorifera 4Rx13]
          Length = 1207

 Score = 88.6 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 34/215 (15%), Positives = 72/215 (33%), Gaps = 14/215 (6%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
           +G   E        E   I +             K R++++ +   VP+ P   +     
Sbjct: 82  YGFLSESAEFADACEAAGIAFIGPTAAQIREFGLKHRARELAAVAQVPMTPGTGLLDSIE 141

Query: 119 DS---QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQLLIEQY 171
           D+      I  P ++K   GG  +G+     + ++             +       IE++
Sbjct: 142 DAVTAAARIGYPVMLKSTAGGGGIGLTRCDDEAALREAYDSVKRLGEQFFRDSGAFIERF 201

Query: 172 VD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQR 229
           VD    +   + GD         V         L+  +       PA  +P    + + +
Sbjct: 202 VDQARHVEVQIFGDGQG-----RVAALGERDCSLQRRNQKVVEETPAPNLPAATRQALHQ 256

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            A    +++  R     +F++D    + ++LE+N 
Sbjct: 257 AAVALGESVNYRSAGTVEFIYDGARDEFYFLEVNT 291


>gi|312110769|ref|YP_003989085.1| acetyl-CoA carboxylase, biotin carboxylase [Geobacillus sp.
           Y4.1MC1]
 gi|311215870|gb|ADP74474.1| acetyl-CoA carboxylase, biotin carboxylase [Geobacillus sp.
           Y4.1MC1]
          Length = 450

 Score = 88.6 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 79/220 (35%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       E   I +        A    K+ +++ +   GVP+ P I  
Sbjct: 77  AIHPGYGLLSENPEFVRRCEEEGIVFVGPKADVIAKMGSKIAARKTMEEAGVPIVPGISF 136

Query: 114 NRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
               +D        I  P ++K   GG  +G+ +++ +  +    +    +++S+     
Sbjct: 137 PLKDVDEAVRTAEHIGYPVMLKASAGGGGIGMQIVRDEDELRKAFVGNQKRAASFFGDGA 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+Y+ +   +   ++ D   +   +   +        K             +     
Sbjct: 197 MYLEKYIANPRHIEIQLLADRHGNCIYLWERECSIQRRHQK----VVEEAPSPFLDEKTR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +++   A  A + IG       +FL D      ++LE+N 
Sbjct: 253 RKIGETAVKAAKHIGYTNAGTMEFLVDEQKN-FYFLEMNT 291


>gi|90415232|ref|ZP_01223166.1| acetyl-CoA carboxylase [marine gamma proteobacterium HTCC2207]
 gi|90332555|gb|EAS47725.1| acetyl-CoA carboxylase [marine gamma proteobacterium HTCC2207]
          Length = 446

 Score = 88.6 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 36/222 (16%), Positives = 77/222 (34%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      +E     +         +  DK+ + + + S GVP  P    
Sbjct: 77  AVHPGYGFLAENADFAEQVENSGFVFIGPTADCIRIMGDKVAAIKAMKSAGVPTVPGSDG 136

Query: 114 NRFTMDSQ-----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGD 164
                 +        I  P +IK   GG   G+ +++ ++++   +     ++ +     
Sbjct: 137 PLDDDPAALRAMGKKIGYPVIIKAASGGGGRGMRIVENEEALVNSVAITKSEAEAAFGDG 196

Query: 165 QLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+++ +   +   V+ D                   L+          PA  IP +
Sbjct: 197 TVYMEKFLQNPRHVEVQVLSDGQGHAI-----HLGDRDCSLQRRHQKVLEEAPAPGIPEE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             + V      A   IG RG    +FL+       +++E+N 
Sbjct: 252 ARQAVFESCTQACIEIGYRGAGTFEFLY--EDGGFYFIEMNT 291


>gi|182412794|ref|YP_001817860.1| pyruvate carboxylase [Opitutus terrae PB90-1]
 gi|177840008|gb|ACB74260.1| pyruvate carboxylase [Opitutus terrae PB90-1]
          Length = 1165

 Score = 88.6 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 45/245 (18%), Positives = 88/245 (35%), Gaps = 23/245 (9%)

Query: 33  VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASAL 89
            + +D+  S+  V      D     +H  +G   E+  +    E   + +         +
Sbjct: 54  AAYLDI-ESIIDVAKRRGVD----AIHPGYGFLSENAELARACERAGLIFVGPRPELLDM 108

Query: 90  SMDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145
             DK  ++ +    GVPV P     +      +     I  P +IK   GG   G+ ++ 
Sbjct: 109 MGDKTAARALAQRIGVPVLPGTEEPLTDRDEALRVAKSIGFPLIIKAAFGGGGRGMRIVH 168

Query: 146 KDQSIP--LDLLQSSSWNH--GDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFY 200
           K   +   LD  Q+ +        + +E+Y+     +   V+GD   +V           
Sbjct: 169 KPADMAGLLDEAQAEAGRAFGNPAVFLEKYIPRAKHIEVQVLGDRHGNVI-----HLHER 223

Query: 201 SYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
              ++        V P+  +P  I  E+   A    ++I        +FL+D    + F+
Sbjct: 224 DCSVQRRHQKVVEVAPSYGLPETIVAELCEAAAKLARSIRYDNAGTIEFLYDLDRHEWFF 283

Query: 260 LEINV 264
           +E+N 
Sbjct: 284 IEMNP 288


>gi|222446081|ref|ZP_03608596.1| hypothetical protein METSMIALI_01730 [Methanobrevibacter smithii
           DSM 2375]
 gi|222435646|gb|EEE42811.1| hypothetical protein METSMIALI_01730 [Methanobrevibacter smithii
           DSM 2375]
          Length = 367

 Score = 88.6 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 42/191 (21%), Positives = 84/191 (43%), Gaps = 8/191 (4%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKG 135
           +IP   + + A  L+ DK+++K+  +  GVP     ++ +   +S+  +  P V+K  +G
Sbjct: 90  DIPVIAANVRAVRLTSDKIKTKEFYNEIGVPTPQYQILAKDDFESKLKMEFPVVLKQGQG 149

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195
                I V +    +         +   D  L E++++G E++  V+G     V    + 
Sbjct: 150 QGGKDIKVAESLDDVK------EYFEEFDHALCEKFIEGSEISIEVLGYNGEYVPLSPIY 203

Query: 196 KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255
           K +  +       LN     P  +       VQR A+   + +G  GI   DF+F    +
Sbjct: 204 KGE--TTLEGIHPLNKIKTAPCLVEGLDNNLVQRTAYKVAKNLGSDGIFEMDFMFSKDEQ 261

Query: 256 KVFWLEINVQP 266
           +++ +E+N +P
Sbjct: 262 QLYAIEVNTRP 272


>gi|148642421|ref|YP_001272934.1| carbamoyl-phosphate synthase, large subunit, CarB
           [Methanobrevibacter smithii ATCC 35061]
 gi|148551438|gb|ABQ86566.1| carbamoyl-phosphate synthase, large subunit, CarB
           [Methanobrevibacter smithii ATCC 35061]
          Length = 367

 Score = 88.6 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 42/191 (21%), Positives = 84/191 (43%), Gaps = 8/191 (4%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKG 135
           +IP   + + A  L+ DK+++K+  +  GVP     ++ +   +S+  +  P V+K  +G
Sbjct: 90  DIPVIAANVRAVRLTSDKIKTKEFYNEIGVPTPQYQILAKDDFESKLKMEFPVVLKQGQG 149

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195
                I V +    +         +   D  L E++++G E++  V+G     V    + 
Sbjct: 150 QGGKDIKVAESLDDVK------EYFEEFDHALCEKFIEGSEISIEVLGYNGEYVPLSPIY 203

Query: 196 KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255
           K +  +       LN     P  +       VQR A+   + +G  GI   DF+F    +
Sbjct: 204 KGE--TTLEGIHPLNKIKTAPCLVEGLDNNLVQRTAYKVAKNLGSDGIFEMDFMFSKDEQ 261

Query: 256 KVFWLEINVQP 266
           +++ +E+N +P
Sbjct: 262 QLYAIEVNTRP 272


>gi|325280706|ref|YP_004253248.1| Pyruvate carboxylase [Odoribacter splanchnicus DSM 20712]
 gi|324312515|gb|ADY33068.1| Pyruvate carboxylase [Odoribacter splanchnicus DSM 20712]
          Length = 494

 Score = 88.6 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 52/263 (19%), Positives = 102/263 (38%), Gaps = 22/263 (8%)

Query: 14  VSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQA 70
           V LS+  A  +  E  G     +D+DR VGL     K D     LH  +G   E+  +  
Sbjct: 40  VYLSAADAVINFPETDGNIPEFLDIDRLVGLA-REYKID----SLHPGYGNLSENAELAE 94

Query: 71  ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL----ISP 126
                 I +         L  DK+ +K + +  GVP+  +      T+D        +  
Sbjct: 95  RCRDNGIVFIGPSPEVIRLMGDKVAAKGIAAQSGVPMLGASQGAVHTLDEARKIAKRLGY 154

Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPL----DLLQSSSWNHGDQLLIEQYVD-GIELTCGV 181
           P +IK + GG   G+ ++     +         ++    +   + IE+Y++    +   +
Sbjct: 155 PVIIKAVSGGGGRGMRIVHHQDELEQLYKIATAEAQVAFNDPSVFIEKYLENPKHIEFQI 214

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241
           + D   +V  +   +    S + K+  L      PA +   + K++   A    +  G +
Sbjct: 215 VADNYGNVVHLGERE---CSIQRKHQKLMEEAPSPA-LDERLRKKMAAAAVSLAKQAGYQ 270

Query: 242 GISRSDFLFDPLSRKVFWLEINV 264
            +   +FL D   +  +++E+N 
Sbjct: 271 SLGTVEFLLDHQ-KHFYFMEMNT 292


>gi|262372555|ref|ZP_06065834.1| urea carboxylase [Acinetobacter junii SH205]
 gi|262312580|gb|EEY93665.1| urea carboxylase [Acinetobacter junii SH205]
          Length = 1201

 Score = 88.6 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 34/233 (14%), Positives = 75/233 (32%), Gaps = 13/233 (5%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
             +         +  F   +G   E        E   I +             K R++++
Sbjct: 64  EKLIQAAKQTGAEAIFPG-YGFLSESADFARACEENNIAFMGPTAEQILEFGLKHRAREL 122

Query: 100 VSSCGVPVCPSILVN---RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL- 155
             +  VP+ P   +       + + + I  P ++K   GG  +G+   +  Q++      
Sbjct: 123 AGAANVPMTPGTGLLDSLEEALTAANRIGYPIMLKSTAGGGGIGLTRCETPQALTDAYES 182

Query: 156 ---QSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
                  +     + IE ++D    +   + GD    V               K      
Sbjct: 183 VKRLGEQFFKDAGVFIECFIDKARHVEVQIFGDGKGQVVAFGERDCSLQRRNQK----VV 238

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
                A +P    K++ + A    +++  R     +F++D    + ++LE+N 
Sbjct: 239 EETPAANLPEATRKKLHQAAIELGKSVNYRSAGTVEFIYDANRDEFYFLEVNT 291


>gi|260577837|ref|ZP_05845771.1| acyl-CoA carboxylase, alpha subunit [Corynebacterium jeikeium ATCC
           43734]
 gi|258604064|gb|EEW17307.1| acyl-CoA carboxylase, alpha subunit [Corynebacterium jeikeium ATCC
           43734]
          Length = 702

 Score = 88.6 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 84/221 (38%), Gaps = 17/221 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+       E   I +      A     DK+ ++  V S  VP  P I  
Sbjct: 86  AIHPGYGFLSENATFAKRCEDEGIIFIGPPAGAIDKMGDKITARATVESRDVPTVPGISR 145

Query: 112 --LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
             L ++  +D+   +  P +IKP  GG   G+ ++++ + +   L+ +          D 
Sbjct: 146 PNLTDQEIIDAADSVGFPVLIKPSAGGGGKGMHLVEEPEKLASALVSARREAASSFGDDT 205

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           L +E +VD    +   ++ D+  +V  +   +        K           A +     
Sbjct: 206 LFLEHFVDTPRHIEVQIVADSHGNVIHLGERECSLQRRHQK----VIEEAPSALLDEKTR 261

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLS-RKVFWLEINV 264
           +E+   A  A +A G  G    +F+       + F++E+N 
Sbjct: 262 QEIGEAACDAARACGYCGAGTVEFIVSAKQPERFFFMEMNT 302


>gi|254426873|ref|ZP_05040580.1| urea carboxylase [Alcanivorax sp. DG881]
 gi|196193042|gb|EDX88001.1| urea carboxylase [Alcanivorax sp. DG881]
          Length = 1207

 Score = 88.6 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 30/214 (14%), Positives = 72/214 (33%), Gaps = 12/214 (5%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
           +G   E+       E   I +             K  ++ +    GVP+ P   + +   
Sbjct: 82  YGFLSENAEFAETCEANGIAFIGPTPKQLREFGLKHEARALAEKAGVPLAPGTDLLQSLE 141

Query: 119 DSQHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQLLIEQY 171
           +++     I  P ++K   GG  +G+     +  +            ++     + IE++
Sbjct: 142 EAKQAASDIGYPIMLKSTAGGGGIGLSRCNDEAELVAAYESVKRLGENFFSDSGVFIERF 201

Query: 172 V-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
           V     +   + GD +  V  +   +        K             +P    +++   
Sbjct: 202 VARARHVEVQIFGDGNGTVLALGERECSLQRRNQK----VVEETPAPNLPQATREKLHAS 257

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           A    Q++  R     ++++D    + ++LE+N 
Sbjct: 258 AARLGQSVEYRSAGTVEYIYDDQRDEFYFLEVNT 291


>gi|218780864|ref|YP_002432182.1| carbamoyl-phosphate synthase L chain ATP-binding [Desulfatibacillum
           alkenivorans AK-01]
 gi|218762248|gb|ACL04714.1| Pyruvate carboxylase, biotin carboxylase subunit [Desulfatibacillum
           alkenivorans AK-01]
          Length = 484

 Score = 88.6 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 37/243 (15%), Positives = 85/243 (34%), Gaps = 22/243 (9%)

Query: 35  QIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKM 94
            +D+DR +                +G   E+    A  E   + +            DK 
Sbjct: 64  YLDIDR-IIWAARKSGAQAVHPG-YGFLAENPQFAAACEEAGLIFIGPSAATIQDLGDKT 121

Query: 95  RSKQVVSSCGVPVCPSILV-------NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147
            S+++    G+P  P   +        R  ++       P ++K + GG   GI  +  +
Sbjct: 122 ISRRLAEEAGLPTIPGSGILPPGGDGKRAAVEFGAKYGYPVMLKAVAGGGGRGIRKVDSE 181

Query: 148 QSIPLDLLQS-----SSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYS 201
           + +   +  +     S++    +L +E+ + +   +   ++GD   +V  +         
Sbjct: 182 KELLSQIEIAKNEAISAFG-DGRLYLEKGIVNPRHIEVQILGDQHGNVIHMGGRNCSIQR 240

Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
              K        + P+ +   + +++ + A    + +G       +FL D      ++LE
Sbjct: 241 RHQKL-----VEIAPSLLDPALEEKICQSAIQYAKHVGYVNAGTVEFLVD-SDDSFYFLE 294

Query: 262 INV 264
           IN 
Sbjct: 295 INT 297


>gi|126436212|ref|YP_001071903.1| carbamoyl-phosphate synthase L chain, ATP-binding [Mycobacterium
           sp. JLS]
 gi|126236012|gb|ABN99412.1| Carbamoyl-phosphate synthase L chain, ATP-binding protein
           [Mycobacterium sp. JLS]
          Length = 662

 Score = 88.6 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 84/221 (38%), Gaps = 17/221 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+    A L+  +I +    + A     DK+ +K  VS+ GVPV P +  
Sbjct: 78  AVHPGYGFLSENADFAAALQAADIVFIGPPVGAIQTMGDKIAAKAAVSAFGVPVVPGVSR 137

Query: 114 NRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
              T D        +  P ++KP  GG   G+ V+     +P  L+    ++++    D 
Sbjct: 138 PGLTDDDLIAGAGDVGFPVLVKPSAGGGGKGMRVVHDPAELPAALVSARREAAAAFGDDT 197

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           L +E++V +   +   V+ D   +V  +   +        K             +     
Sbjct: 198 LFLERFVLNPRHIEVQVLADGFGNVIHLGERECSLQRRHQK----VIEEAPSPLLDEATR 253

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLS-RKVFWLEINV 264
             +   A    +++   G    +F+       + F++E+N 
Sbjct: 254 ARIGAAACDTARSVDYAGAGTVEFIVSADRPDEFFFMEMNT 294


>gi|291537094|emb|CBL10206.1| urea carboxylase [Roseburia intestinalis M50/1]
          Length = 1193

 Score = 88.6 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 38/257 (14%), Positives = 91/257 (35%), Gaps = 32/257 (12%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       E   I +         L   K  ++ +     VP+ P   +
Sbjct: 77  AIHPGYGFLSENTDFAKECEENGIKFIGPDSEQIKLFGLKHSARALAEKADVPLLPGTGL 136

Query: 114 NRFTMDS---QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQL 166
                ++      I  P ++K   GG  +G+ +    + +          +++  +   +
Sbjct: 137 LSGVEEAVTEAEKIGYPVILKSTAGGGGIGMRICNSTEELRQAYDAVCHLAAANFNDAGV 196

Query: 167 LIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIY 224
            +E+YV     +   + G+   + T +A          ++  +       PA  +  ++ 
Sbjct: 197 FLEKYVTRSRHVEVQIFGNEYGETTALAE-----RDCSVQRRNQKVVEESPAPNLSDEVR 251

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
           +++   A    +    R     +FL+D  +   ++LE+N             +    G +
Sbjct: 252 EKMYAAAERLAKEASYRSAGTVEFLYDDQTEGFYFLEVNT-----------RLQVEHGIT 300

Query: 285 FR----ELLLWMVEDAS 297
                 +L+ WMV++A+
Sbjct: 301 EEVLGIDLVEWMVKEAA 317


>gi|193872918|gb|ACF23149.1| D-alanine-D-alanine ligase [Streptococcus oralis]
          Length = 96

 Score = 88.6 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 2/96 (2%)

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNST 212
               ++ +  ++L+EQ V+  E+  G++G+  +  T     V    FY Y+ KY     T
Sbjct: 1   ALELAFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKIT 60

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
             +PAKI  D    ++  A  A +AIG  G+SR DF
Sbjct: 61  MDIPAKISDDAVAVMRHNAETAFRAIGGLGLSRCDF 96


>gi|291540328|emb|CBL13439.1| urea carboxylase [Roseburia intestinalis XB6B4]
          Length = 1193

 Score = 88.6 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 38/257 (14%), Positives = 91/257 (35%), Gaps = 32/257 (12%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       E   I +         L   K  ++ +     VP+ P   +
Sbjct: 77  AIHPGYGFLSENTDFAKECEENGIKFIGPDSEQIKLFGLKHSARALAEKADVPLLPGTGL 136

Query: 114 NRFTMDS---QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQL 166
                ++      I  P ++K   GG  +G+ +    + +          +++  +   +
Sbjct: 137 LSGVEEAVTEAEKIGYPVILKSTAGGGGIGMRICNSTEELRQAYDAVCHLAAANFNDAGV 196

Query: 167 LIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIY 224
            +E+YV     +   + G+   + T +A          ++  +       PA  +  ++ 
Sbjct: 197 FLEKYVTRSRHVEVQIFGNEYGETTALAE-----RDCSVQRRNQKVVEESPAPNLSDEVR 251

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
           +++   A    +    R     +FL+D  +   ++LE+N             +    G +
Sbjct: 252 EKMYAAAERLAKEASYRSAGTVEFLYDDQTEGFYFLEVNT-----------RLQVEHGIT 300

Query: 285 FR----ELLLWMVEDAS 297
                 +L+ WMV++A+
Sbjct: 301 EEVLGIDLVEWMVKEAA 317


>gi|68536636|ref|YP_251341.1| acyl-CoA carboxylase, alpha subunit [Corynebacterium jeikeium K411]
 gi|68264235|emb|CAI37723.1| acyl-CoA carboxylase, alpha subunit [Corynebacterium jeikeium K411]
          Length = 702

 Score = 88.6 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 84/221 (38%), Gaps = 17/221 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+       E   I +      A     DK+ ++  V S  VP  P I  
Sbjct: 86  AIHPGYGFLSENATFAKRCEDEGIIFIGPPAGAIDKMGDKITARATVESRDVPTVPGISR 145

Query: 112 --LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
             L ++  +D+   +  P +IKP  GG   G+ ++++ + +   L+ +          D 
Sbjct: 146 PNLTDQEIIDAADSVGFPVLIKPSAGGGGKGMHLVEEPEKLASALVSARREAASSFGDDT 205

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           L +E +VD    +   ++ D+  +V  +   +        K           A +     
Sbjct: 206 LFLEHFVDTPRHIEVQIVADSHGNVIHLGERECSLQRRHQK----VIEEAPSALLDEKTR 261

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLS-RKVFWLEINV 264
           +E+   A  A +A G  G    +F+       + F++E+N 
Sbjct: 262 QEIGEAACDAARACGYCGAGTVEFIVSAKQPERFFFMEMNT 302


>gi|193872978|gb|ACF23179.1| D-alanine-D-alanine ligase [Streptococcus mitis]
          Length = 96

 Score = 88.3 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 30/96 (31%), Positives = 49/96 (51%), Gaps = 2/96 (2%)

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMG--DASLDVTEIAVPKSDFYSYELKYSSLNST 212
               ++ +  ++L+EQ V+  E+  G++G  D    +    V    FY Y+ KY     T
Sbjct: 1   ALKLAFQYDSRVLVEQGVNAREIEVGLLGSYDVKSTLPGEVVKDVAFYDYDAKYIDNKIT 60

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
             +PAKI  D+   +++ A  A +AIG  G+SR DF
Sbjct: 61  MDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDF 96


>gi|296102545|ref|YP_003612691.1| putative allophanate hydrolase [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295057004|gb|ADF61742.1| putative allophanate hydrolase [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
          Length = 1200

 Score = 88.3 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 36/234 (15%), Positives = 79/234 (33%), Gaps = 27/234 (11%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN---RFTMDSQHLISPPYVIKP 132
            I +         L   K  ++ +  + GVP+     +       + +   +  P ++K 
Sbjct: 99  GIAFVGPTPEQLRLFGLKHTARALAKAHGVPMLEGTGLLANVDEAVHAAAEVGYPVMLKS 158

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQLLIEQYVD-GIELTCGVMGDASL 187
             GG  +G+ V    + +                   + IE+Y++    L   + GD   
Sbjct: 159 TAGGGGIGMRVCYHAEELRDAFDAVVRLGKNNFSDAGVFIEKYIERARHLEVQLFGDGKG 218

Query: 188 DVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           +V  + V          K             +P  +   +   A    QA+  R     +
Sbjct: 219 EVIALGVRDCSVQRRNQKVL----EETPAPNLPDGMEAALCEAAIKLGQAVNYRSAGTVE 274

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR----ELLLWMVEDAS 297
           F++D  + + ++LE+N             +    G + +    +L+ WM++ A+
Sbjct: 275 FVYDSDAARFYFLEVNT-----------RLQVEHGVTEQVWGVDLVRWMIDLAA 317


>gi|172064806|ref|YP_001815518.1| pyruvate carboxylase [Burkholderia ambifaria MC40-6]
 gi|171997048|gb|ACB67965.1| pyruvate carboxylase [Burkholderia ambifaria MC40-6]
          Length = 1173

 Score = 88.3 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 44/246 (17%), Positives = 92/246 (37%), Gaps = 25/246 (10%)

Query: 33  VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLV-QAILELLEIPYTHSGILASA 88
            + +D+D  +  V    K D     +H  +G   E+    QA+++   I +         
Sbjct: 66  AAYLDID-DILRVARQAKVD----AIHPGYGFLSENPEFAQAVID-AGIRWIGPSPDVMR 119

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSLGIIVI 144
              +K+ ++    + GVPV P+        D+       +  P ++K   GG   G+ V+
Sbjct: 120 TLGNKVAARNAAIAAGVPVMPATAPLPDDFDACKVLAAEVGYPLMLKASWGGGGRGMRVL 179

Query: 145 KKDQSI----PLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDF 199
           +  Q +    P+   ++ +    D++ +E+ V     +   V+GD    V  +       
Sbjct: 180 ENAQDLETLLPVARREALAAFGNDEVYVEKLVRNARHVEVQVLGDLHGTVVHLYERDCTV 239

Query: 200 YSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
                K          PA  +  +    +   A    +A+G       +FL D  + + +
Sbjct: 240 QRRNQK-----VVERAPAPYLDRESRHALCESALRLMRAVGYTHAGTVEFLMDADTGQFY 294

Query: 259 WLEINV 264
           ++E+N 
Sbjct: 295 FIEVNP 300


>gi|161508239|ref|YP_001577721.1| carbamoyl phosphate synthase large subunit [Lactobacillus
           helveticus DPC 4571]
 gi|172048328|sp|A8YVZ3|CARB_LACH4 RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|160349228|gb|ABX27902.1| Carbamoyl-phosphate synthase, large subunit [Lactobacillus
           helveticus DPC 4571]
          Length = 1062

 Score = 88.3 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 45/295 (15%), Positives = 98/295 (33%), Gaps = 38/295 (12%)

Query: 24  SALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ----- 69
            AL+  G++   I         D   S  L    L  +   NV      E  +VQ     
Sbjct: 579 KALQKMGYEAIVINSNPETVSTDFSVSDKLYFEPLTLEDVLNVCDLEQPEGVIVQFGGQT 638

Query: 70  -----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQH 122
                A LE   +    + +     + D+    Q++ S  +     +        M +  
Sbjct: 639 SINLAAGLERHGVKILGTTVKDLDRAEDREEFDQIIKSLHLHQPQGLTATTHEGVMKAAD 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            +  P +++P        + ++     +   L   +       +L++ Y+DG E     +
Sbjct: 699 QLGYPVLVRPSYVLGGKAMEIVYSKDELEEYLHDHADIAEDHPILVDDYLDGRECDVDAI 758

Query: 183 GDAS---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAI 238
            D     L      +  +  +S        +S  V P +    ++ +++  +      A+
Sbjct: 759 SDGKTVLLPGIMEHIEHAGVHS-------GDSMAVYPPQTFSDEVEEKITDVTKKLALAL 811

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            C+GI    F+       V+ +E+N +   T     P ++   G    ++   ++
Sbjct: 812 NCKGIMNIQFIVR--DGDVYVIEVNPRASRT----VPFLSKITGIEMAQVATRVI 860



 Score = 72.5 bits (177), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 50/286 (17%), Positives = 98/286 (34%), Gaps = 33/286 (11%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI---------DVD------------RSVGLV 45
           G ++E + S   G     AL D G++V  +         D               SV  +
Sbjct: 21  GQAAEFDYS---GTQACLALRDEGYEVVLVNSNPATIMTDTTIADKVYIEPLTVDSVSRI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +    PD     L G  G +  +      IL+ L I    + + +   + D+ + K++  
Sbjct: 78  IRQEYPDAILPTLGGQVGLNMALALAKTGILDELHIELLGTKLASIEQAEDREKFKELCQ 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G PV PS  V      +     I  P +++P       G  +      +         
Sbjct: 138 KLGEPVPPSKTVKTVEDALAFGDEIGYPIIVRPAFTMGGTGGGICHNHDELAEIAKNGLE 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   + LIE+ + G  E+   VM D+S +   +   ++  +     ++  +        
Sbjct: 198 LSPVTECLIEKSIAGYKEIEFEVMRDSSDNAMIVCCMEN--FDPVGIHTGDSIVFSPSQT 255

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +    Y+ ++  +    +A+   G        DP S     +E+N 
Sbjct: 256 LSDKEYQMLRDCSLKLIRALKIEGGCNVQLALDPNSLDYDVIEVNP 301


>gi|111610238|gb|ABH11616.1| pyrimidine-specific carbamoyl-phosphate synthase large chain
           [Lactobacillus helveticus CNRZ32]
          Length = 1062

 Score = 88.3 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 45/295 (15%), Positives = 98/295 (33%), Gaps = 38/295 (12%)

Query: 24  SALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ----- 69
            AL+  G++   I         D   S  L    L  +   NV      E  +VQ     
Sbjct: 579 KALQKMGYEAIVINSNPETVSTDFSVSDKLYFEPLTLEDVLNVCDLEQPEGVIVQFGGQT 638

Query: 70  -----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQH 122
                A LE   +    + +     + D+    Q++ S  +     +        M +  
Sbjct: 639 SINLAAGLERHGVKILGTTVKDLDRAEDREEFDQIIKSLHLHQPQGLTATTHEGVMKAAD 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            +  P +++P        + ++     +   L   +       +L++ Y+DG E     +
Sbjct: 699 QLGYPVLVRPSYVLGGKAMEIVYSKDELEEYLHDHADIAEDHPILVDDYLDGRECDVDAI 758

Query: 183 GDAS---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAI 238
            D     L      +  +  +S        +S  V P +    ++ +++  +      A+
Sbjct: 759 SDGKTVLLPGIMEHIEHAGVHS-------GDSMAVYPPQTFSDEVEEKITDVTKKLALAL 811

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            C+GI    F+       V+ +E+N +   T     P ++   G    ++   ++
Sbjct: 812 NCKGIMNIQFIVR--DGDVYVIEVNPRASRT----VPFLSKITGIEMAQVATRVI 860



 Score = 72.5 bits (177), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 50/286 (17%), Positives = 98/286 (34%), Gaps = 33/286 (11%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI---------DVD------------RSVGLV 45
           G ++E + S   G     AL D G++V  +         D               SV  +
Sbjct: 21  GQAAEFDYS---GTQACLALRDEGYEVVLVNSNPATIMTDTTIADKVYIEPLTVDSVSRI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +    PD     L G  G +  +      IL+ L I    + + +   + D+ + K++  
Sbjct: 78  IRQEYPDAILPTLGGQVGLNMALALAKTGILDELHIELLGTKLASIEQAEDREKFKELCQ 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G PV PS  V      +     I  P +++P       G  +      +         
Sbjct: 138 KLGEPVPPSKTVKTVEDALAFGDEIGYPIIVRPAFTMGGTGGGICHNHDELAEIAKNGLE 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   + LIE+ + G  E+   VM D+S +   +   ++  +     ++  +        
Sbjct: 198 LSPVTECLIEKSIAGYKEIEFEVMRDSSDNAMIVCCMEN--FDPVGIHTGDSIVFSPSQT 255

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +    Y+ ++  +    +A+   G        DP S     +E+N 
Sbjct: 256 LSDKEYQMLRDCSLKLIRALKIEGGCNVQLALDPNSLDYDVIEVNP 301


>gi|296445737|ref|ZP_06887690.1| acetyl-CoA carboxylase, biotin carboxylase [Methylosinus
           trichosporium OB3b]
 gi|296256717|gb|EFH03791.1| acetyl-CoA carboxylase, biotin carboxylase [Methylosinus
           trichosporium OB3b]
          Length = 452

 Score = 88.3 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 79/220 (35%), Gaps = 18/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     I+    + +         L  DK+ +K      G+P  P    
Sbjct: 77  AVHPGYGFLSENARFAEIVAEHGLTFIGPKAEHIRLMGDKIEAKATARRLGIPCVPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGDQ 165
            I            I  P ++K   GG   G+ V + D  + + +     ++ +    D 
Sbjct: 137 PIADEIEGARVAAKIGYPVLVKAASGGGGRGMKVARNDTELAIAIPTARTEAKAAFGDDT 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+Y++    +   V GD       +        S + ++  +      PA +  +  
Sbjct: 197 VYLEKYLEKPRHIEIQVFGDGKGAAIHLGERD---CSLQRRHQKVWEESPSPA-LNDEQR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            E+  +   A + +   G    +FL+   +   +++E+N 
Sbjct: 253 AEIGEVCAAAMRELKYAGAGTIEFLY--ENGAFYFIEMNT 290


>gi|226286590|gb|EEH42103.1| biotin carboxylase [Paracoccidioides brasiliensis Pb18]
          Length = 673

 Score = 88.3 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 36/203 (17%), Positives = 79/203 (38%), Gaps = 12/203 (5%)

Query: 69  QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD----SQHLI 124
           Q + E         G    A + DK+++K++  +CGVP+  ++      +D        +
Sbjct: 97  QRMWEEARAKVIGPGWEVLAQTGDKLQAKELAEACGVPILKAMKTPTNDIDLIGRFAAEV 156

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG--IELTCGVM 182
             P ++K + GG   GI  +K    +   + +++  +   ++ +E+   G    +   V+
Sbjct: 157 GYPVMVKAVDGGGGRGIRFVKGADELQSAVDRAAGESPSTKVFVEKAAVGSFHHVEVQVI 216

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCR 241
           GD + +V  +           ++          PA +    +  +V   A    + I   
Sbjct: 217 GDGTGEVRHLWE-----RDCSVQRRFQKIVEYSPAMMKDRKLVSKVIESALKIAKMIKYL 271

Query: 242 GISRSDFLFDPLSRKVFWLEINV 264
            +   +FL      + F+LE+N 
Sbjct: 272 SLGTFEFLVSETLSEFFFLEVNP 294


>gi|225849299|ref|YP_002729463.1| pyruvate carboxylase (Pyruvic carboxylase) (PYC)
           [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225643093|gb|ACN98143.1| pyruvate carboxylase (Pyruvic carboxylase) (PYC)
           [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 482

 Score = 88.3 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 78/220 (35%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+           I +        AL  DKM +K+ +   GVPV P    
Sbjct: 85  AIHSGYGFLSENPEFAEYCWKQGIVFIGPHPDHIALFGDKMAAKKKMRELGVPVLPGSDE 144

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSWNHGDQ 165
            I   +        I  P ++K   GG   G+ +++++            ++  +     
Sbjct: 145 PISDIKKAKKIADEIGYPVILKAAFGGGGRGMRIVREESEFEDLFKSAFNEAKKFFGRGD 204

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+YV+    +   +M D   +V  +            K             +  D+ 
Sbjct: 205 VFIEKYVENPRHIEIQIMADKYGNVVHLGERDCSIQRRHQK----VVEIARSPTLNEDVK 260

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +E+ R +  A   +G   +   ++L D      +++E+N 
Sbjct: 261 RELYRTSVKAMFKVGYENVGTIEYLVDEKDN-FYFIEMNT 299


>gi|297530198|ref|YP_003671473.1| carbamoyl-phosphate synthase L chain ATP-binding protein
           [Geobacillus sp. C56-T3]
 gi|297253450|gb|ADI26896.1| Carbamoyl-phosphate synthase L chain ATP-binding protein
           [Geobacillus sp. C56-T3]
          Length = 450

 Score = 88.3 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 33/220 (15%), Positives = 79/220 (35%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       E   I +        A    K+ +++ +   GVP+ P +  
Sbjct: 77  AIHPGYGLLSENPAFARRCEEEGIVFIGPKADVIAAMGSKIEARRTMEKAGVPIVPGVSF 136

Query: 114 ----NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
               +     +   I  P ++K   GG  +G+ + + +  +         +++S+     
Sbjct: 137 ALDGSDEAAKAAASIGYPVMLKASAGGGGIGMHIARDEAELRQAFEGSQKRAASFFGDGT 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+Y++    +   ++ D + +   +   +        K             +  +  
Sbjct: 197 MYIEKYIERPRHIEIQLLADQNGNCVYLWERECSIQRRHQK----VVEEAPSPFLDEETR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +++   A  A + IG       +FL D      ++LE+N 
Sbjct: 253 RKMGEAAVRAARYIGYANAGTIEFLVDEQKN-FYFLEMNT 291


>gi|225435213|ref|XP_002282042.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 1349

 Score = 88.3 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 56/280 (20%), Positives = 102/280 (36%), Gaps = 38/280 (13%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G++V  I         D D              V  VL   +PD    
Sbjct: 110 SGTQACKALKEEGYEVVLINSNPATIMTDPDMADKTYITPMTPELVEQVLEKERPDAILP 169

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G    +  V      +LE   +    + + A   + D+   KQ + + GV   PS  
Sbjct: 170 TMGGQTALNLAVALAESGVLEKYGVELIGAKLEAIKKAEDRELFKQAMENIGVKTPPSGI 229

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
              ++     +  +   P +I+P       G  +    +          + +   Q+L+E
Sbjct: 230 GTTLDECMEIANSIGEFPLIIRPAFTLGGTGGGIAYNREEFEAICKSGLAASLTSQVLVE 289

Query: 170 QYVDG-IELTCGVMGDASLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPAK-IPLDIYKE 226
           + + G  E    VM D + +V  I   ++ D           +S  V PA+ +    Y+ 
Sbjct: 290 KSLLGWKEYELEVMRDLADNVVIICSIENIDPMGVHT----GDSITVAPAQTLTDKEYQR 345

Query: 227 VQRLAFLAHQAIG--CRGISRSDFLFDPLSRKVFWLEINV 264
           ++  +    + IG  C G S   F  +P+  +V  +E+N 
Sbjct: 346 LRDYSVAIIREIGVECGG-SNVQFAVNPVDGEVMVIEMNP 384



 Score = 45.1 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 29/189 (15%), Positives = 70/189 (37%), Gaps = 10/189 (5%)

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---ISPPYVIKPLKGGS 137
            +   +   + ++ R   +++   +       + +   D+  +   I  P V++P     
Sbjct: 756 GTSPDSIDAAENRERFNAILNDLKIEQPKG-GIAKSEADALAIAMDIGYPVVVRPSYVLG 814

Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPK 196
              + ++  D  +   L  +   +    +LI++Y+ D IE+    + D+  +V    + +
Sbjct: 815 GRAMEIVYSDDKLVTYLENAVEVDPERPVLIDRYLSDAIEIDVDALADSEGNVVIGGIME 874

Query: 197 SDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255
              +  +    S +S   LP K IP      ++    +  + +   G+    +       
Sbjct: 875 ---HIEQAGVHSGDSACSLPTKTIPSSCLDTIRSWTTILAKKLNVCGLMNCQYAITAS-G 930

Query: 256 KVFWLEINV 264
            VF LE N 
Sbjct: 931 SVFLLEANP 939


>gi|110597682|ref|ZP_01385967.1| acetyl-CoA carboxylase, biotin carboxylase [Chlorobium ferrooxidans
           DSM 13031]
 gi|110340802|gb|EAT59279.1| acetyl-CoA carboxylase, biotin carboxylase [Chlorobium ferrooxidans
           DSM 13031]
          Length = 447

 Score = 88.3 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 78/220 (35%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     +     I +            DK  +K  + + GVPV P    
Sbjct: 77  AIHPGYGFLAENADFAEVCASANIKFIGPTAKMINQMGDKNTAKSTMIAAGVPVVPGSPG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGDQ 165
            +   +  +++      P +IKP  GG   G+ V+ ++  +   L     ++        
Sbjct: 137 LVTDLKQAIETAKKTGYPVIIKPTAGGGGKGMRVVTEESQLEKALNTARSEAEQAFGNSG 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+Y++    +   ++ D   +   +            K             +   + 
Sbjct: 197 VYIEKYLENPRHVEIQILSDQHGNTIHLGERDCTVQRRHQK----LIEETPSPAVDDALR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K++   A  A +AI   G    +FL D   R  +++E+N 
Sbjct: 253 KKMGDAAVAAARAINYEGAGTIEFLLDKH-RDFYFMEMNT 291


>gi|116514876|ref|YP_813782.1| carbamoyl phosphate synthase large subunit [Lactobacillus
           delbrueckii subsp. bulgaricus ATCC BAA-365]
 gi|122274392|sp|Q047M8|CARB_LACDB RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|116094191|gb|ABJ59344.1| carbamoyl-phosphate synthase large subunit [Lactobacillus
           delbrueckii subsp. bulgaricus ATCC BAA-365]
          Length = 1062

 Score = 88.3 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 45/295 (15%), Positives = 98/295 (33%), Gaps = 38/295 (12%)

Query: 24  SALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ----- 69
            AL+  G++   I         D   S  L    L  +   NV      E  +VQ     
Sbjct: 579 KALQKMGYEAIVINSNPETVSTDFSVSDKLYFEPLTLEDVLNVCDLEQPEGVIVQFGGQT 638

Query: 70  -----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQH 122
                A LE   +    + +     + D+    Q++ S  +     +        M +  
Sbjct: 639 SINLAAGLERHGVKILGTTVKDLDRAEDREEFDQIIKSLHLHQPQGLTATTHEGVMKAAD 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            +  P +++P        + ++     +   L   +       +L++ Y+DG E     +
Sbjct: 699 QLGYPVLVRPSYVLGGKAMEIVYSKDELEEYLHDHADIAEDHPILVDDYLDGRECDVDAI 758

Query: 183 GDAS---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAI 238
            D     L      +  +  +S        +S  V P +    ++ +++  +      A+
Sbjct: 759 SDGKTVLLPGIMEHIEHAGVHS-------GDSMAVYPPQTFSDEVEEKITDVTKKLALAL 811

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            C+GI    F+       V+ +E+N +   T     P ++   G    ++   ++
Sbjct: 812 NCKGIMNIQFIVR--DGDVYVIEVNPRASRT----VPFLSKITGIEMAQVATRVI 860



 Score = 72.5 bits (177), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 50/286 (17%), Positives = 98/286 (34%), Gaps = 33/286 (11%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI---------DVD------------RSVGLV 45
           G ++E + S   G     AL D G++V  +         D               SV  +
Sbjct: 21  GQAAEFDYS---GTQACLALRDEGYEVVLVNSNPATIMTDTTIADKVYIEPLTVDSVSRI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +    PD     L G  G +  +      IL+ L I    + + +   + D+ + K++  
Sbjct: 78  IRQEYPDAILPTLGGQVGLNMALALAKTGILDELHIELLGTKLASIEQAEDREKFKELCQ 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G PV PS  V      +     I  P +++P       G  +      +         
Sbjct: 138 KLGEPVPPSKTVKIVEDALAFGDEIGYPIIVRPAFTMGGTGGGICHNHDELAEIAKNGLE 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   + LIE+ + G  E+   VM D+S +   +   ++  +     ++  +        
Sbjct: 198 LSPVTECLIEKSIAGYKEIEFEVMRDSSDNAMIVCCMEN--FDPVGIHTGDSIVFSPSQT 255

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +    Y+ ++  +    +A+   G        DP S     +E+N 
Sbjct: 256 LSDKEYQMLRDCSLKLIRALKIEGGCNVQLALDPNSLDYDVIEVNP 301


>gi|300696733|ref|YP_003747394.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)
           (D-Ala-D-Ala ligase) [Ralstonia solanacearum CFBP2957]
 gi|299073457|emb|CBJ52973.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)
           (D-Ala-D-Ala ligase) [Ralstonia solanacearum CFBP2957]
          Length = 367

 Score = 88.3 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 69/336 (20%), Positives = 112/336 (33%), Gaps = 68/336 (20%)

Query: 18  SGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQA------I 71
           SG      L DAGF +            L     D  F        EDG+ QA      +
Sbjct: 34  SGADIGHCLRDAGFDLLTPHAAPDPARAL-----DWVFP-----DTEDGIAQAIGRGATM 83

Query: 72  LELLEIPYTHSGILASALS--------------MDKMRSKQVVSSCGVPVCPSILVNRF- 116
           L    + +    I   A +               DK  +   +   G+PV  S L+ R  
Sbjct: 84  LWANTVLFRGHPIERRADAAWIVGQAPALQQDADDKFATNARLRRHGLPVAASALIGREA 143

Query: 117 ------------TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL-QSSSWNHG 163
                           +  ++ P VIKP++G  S G+ ++    S+         S   G
Sbjct: 144 CGSLPPLQALREDDLHRAGLAFPLVIKPVRGRGSEGVTLVHDLPSMQRAAAGLLDSGAFG 203

Query: 164 DQLLIEQYVDGIELTCGVM-GDASLDVTE--------IAVPKSDFYSYELKYSSLNSTHV 214
           D L+ E ++ G ELT  V+     L              V + +       Y+   +   
Sbjct: 204 DALIAETFLAGEELTVTVLPRQDDLPAAFSSDTASALPPVRRFNHVDGVAPYNGAVAVTR 263

Query: 215 LPAKIPLD-----IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
               + ++       + + R   LA+  +G R   R D   D         ++N++P MT
Sbjct: 264 NSVALSVEAAMAPEARALIRACLLAYDVVGARAPIRIDCRADAH-GAYQLFDLNMKPNMT 322

Query: 270 ---------PVSIFPEMAAYAGYSFRELLLWMVEDA 296
                      S+    A   G+ +RELL+ M+  A
Sbjct: 323 GAGRPGREDQDSLSALAARAVGWDYRELLVRMMGAA 358


>gi|57168200|ref|ZP_00367339.1| acetyl-CoA carboxylase, biotin carboxylase [Campylobacter coli
           RM2228]
 gi|305431655|ref|ZP_07400824.1| acetyl-CoA carboxylase, biotin carboxylase [Campylobacter coli
           JV20]
 gi|57020574|gb|EAL57243.1| acetyl-CoA carboxylase, biotin carboxylase [Campylobacter coli
           RM2228]
 gi|304445250|gb|EFM37894.1| acetyl-CoA carboxylase, biotin carboxylase [Campylobacter coli
           JV20]
          Length = 443

 Score = 88.3 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 41/215 (19%), Positives = 77/215 (35%), Gaps = 14/215 (6%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVN 114
           +G   E+     I     I +    + A  L  DK ++KQV+   GVPV P     +   
Sbjct: 83  YGFLSENQTFVEICAKHNIKFIGPSVEAMNLMSDKSKAKQVMQRAGVPVIPGSDGALAGA 142

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQLLIEQ 170
                    I  P ++K   GG   G+ V++ ++ +      + S          + +E+
Sbjct: 143 EAAKKLAKEIGYPVILKAAAGGGGRGMRVVEHEKDLEKAYWSAESEAMTAFGDGTMYMEK 202

Query: 171 YV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           Y+ +   +   ++GD+  +V  I            K             +       +  
Sbjct: 203 YIQNPRHIEVQIIGDSFGNVIHIGERDCSMQRRHQK----LIEESPAILLDEKTRARLHE 258

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            A  A +AI   G    +FL D  +   +++E+N 
Sbjct: 259 TAVKAAKAISYEGAGTFEFLVDK-NLDFYFIEMNT 292


>gi|325126580|gb|ADY85910.1| Carbamoyl-phosphate synthase, large subunit [Lactobacillus
           delbrueckii subsp. bulgaricus 2038]
          Length = 1062

 Score = 88.3 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 45/295 (15%), Positives = 98/295 (33%), Gaps = 38/295 (12%)

Query: 24  SALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ----- 69
            AL+  G++   I         D   S  L    L  +   NV      E  +VQ     
Sbjct: 579 KALQKMGYEAIVINSNPETVSTDFSVSDKLYFEPLTLEDVLNVCDLEQPEGVIVQFGGQT 638

Query: 70  -----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQH 122
                A LE   +    + +     + D+    Q++ S  +     +        M +  
Sbjct: 639 SINLAAGLERHGVKILGTTVKDLDRAEDREEFDQIIKSLHLHQPQGLTATTHEGVMKAAD 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            +  P +++P        + ++     +   L   +       +L++ Y+DG E     +
Sbjct: 699 QLGYPVLVRPSYVLGGKAMEIVYSKDELEEYLHDHADIAEDHPILVDDYLDGRECDVDAI 758

Query: 183 GDAS---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAI 238
            D     L      +  +  +S        +S  V P +    ++ +++  +      A+
Sbjct: 759 SDGKTVLLPGIMEHIEHAGVHS-------GDSMAVYPPQTFSDEVEEKITDVTKKLALAL 811

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            C+GI    F+       V+ +E+N +   T     P ++   G    ++   ++
Sbjct: 812 NCKGIMNIQFIVR--DGNVYVIEVNPRASRT----VPFLSKITGIEMAQVATRVI 860



 Score = 72.5 bits (177), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 50/286 (17%), Positives = 98/286 (34%), Gaps = 33/286 (11%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI---------DVD------------RSVGLV 45
           G ++E + S   G     AL D G++V  +         D               SV  +
Sbjct: 21  GQAAEFDYS---GTQACLALRDEGYEVVLVNSNPATIMTDTTIADKVYIEPLTVDSVSRI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +    PD     L G  G +  +      IL+ L I    + + +   + D+ + K++  
Sbjct: 78  IRQEYPDAILPTLGGQVGLNMALALAKTGILDELHIELLGTKLASIEQAEDREKFKELCQ 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G PV PS  V      +     I  P +++P       G  +      +         
Sbjct: 138 KLGEPVPPSKTVKIVEDALAFGDEIGYPIIVRPAFTMGGTGGGICHNHDELAEIAKNGLE 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   + LIE+ + G  E+   VM D+S +   +   ++  +     ++  +        
Sbjct: 198 LSPVTECLIEKSIAGYKEIEFEVMRDSSDNAMIVCCMEN--FDPVGIHTGDSIVFSPSQT 255

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +    Y+ ++  +    +A+   G        DP S     +E+N 
Sbjct: 256 LSDKEYQMLRDCSLKLIRALKIEGGCNVQLALDPNSLDYDVIEVNP 301


>gi|255659411|ref|ZP_05404820.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Mitsuokella
           multacida DSM 20544]
 gi|260848373|gb|EEX68380.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Mitsuokella
           multacida DSM 20544]
          Length = 455

 Score = 88.3 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 36/217 (16%), Positives = 78/217 (35%), Gaps = 16/217 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   ED      +    I +         L  DK  ++  +   G+P+      
Sbjct: 77  AIHPGYGFLSEDADFAEQVTAHGITWIGPMPETIRLVGDKDVARASMQPSGIPMAKGSEP 136

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL---DLLQSSSWNHGDQLL 167
           +  N+  +     +  P ++KP+ GG   G+ V   +  +      L+     N+  +  
Sbjct: 137 LKNNKEAIKMAKEVGYPVILKPVSGGGGKGMYVAHNEDDLKNILDALVDLKKTNYYFEHY 196

Query: 168 IEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227
           IE+      +   ++ D   +V  +   +        K             +  ++ K+V
Sbjct: 197 IERS---RHIEVQIVADNYGEVIHLGERECSIQRRNQKLL----EESPSIALTHEMRKQV 249

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             LA  A +++    +   +FL D    + +++EIN 
Sbjct: 250 GTLAVKAAKSVHYSNVGTVEFLLDLKDNQFYFMEINP 286


>gi|84501740|ref|ZP_00999912.1| pyruvate carboxylase [Oceanicola batsensis HTCC2597]
 gi|84390361|gb|EAQ02920.1| pyruvate carboxylase [Oceanicola batsensis HTCC2597]
          Length = 1146

 Score = 88.3 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 80/221 (36%), Gaps = 18/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       +   I +            DK  +++V    GVPV P+  V
Sbjct: 80  AIHPGYGLLSENPDFVDACDAAGITFIGPRAETMRALGDKASARKVAVEAGVPVIPATEV 139

Query: 114 NRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-----SSSWNHGD 164
                ++       I  P ++K   GG   G+  I+  + +   +L+      +++ +G+
Sbjct: 140 LGDDFEAITKEAEEIGFPLMLKASWGGGGRGMRPIENAKELKDKVLEGRREAEAAFGNGE 199

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
             L +  +    +   ++GD   ++  +           ++  +       PA  +    
Sbjct: 200 GYLEKMIIRARHVEVQILGDRQGNIYHLYE-----RDCSVQRRNQKVVERAPAPYLSEAQ 254

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +E+  L       +        +FL D  + K +++E+N 
Sbjct: 255 REELCELGRKICAHVNYECAGTVEFLMDMDTGKFYFIEVNP 295


>gi|297539391|ref|YP_003675160.1| urea carboxylase [Methylotenera sp. 301]
 gi|297258738|gb|ADI30583.1| urea carboxylase [Methylotenera sp. 301]
          Length = 1215

 Score = 88.3 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 76/220 (34%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       E   I +             K  ++++    GVP+ P   +
Sbjct: 77  AIHPGYGFLSENADFAEKCEAKGIAFIGPTPKQMRDFGLKHTARELAEKNGVPLLPGTGL 136

Query: 114 NRFTMDS---QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQL 166
                ++      I  P ++K   GG  +G+ +I     +          S +      +
Sbjct: 137 LASVEEAHLNAEKIGYPVMLKSTAGGGGIGMQLIWSADELNAAFESVQRLSRANFKSTGI 196

Query: 167 LIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIY 224
            +E+YV     +   + GD    V  +           ++  +       PA  I  ++ 
Sbjct: 197 YLEKYVQAARHIEVQIFGDGLGKVIALGE-----RDCSVQRRNQKVIEETPAPHISDEVR 251

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K +   A     A+  R     +F++D  S + ++LE+N 
Sbjct: 252 KSLSDTAVKLGCALNYRSAGTVEFVYDNDSGQFYFLEVNT 291


>gi|256390296|ref|YP_003111860.1| carbamoyl-phosphate synthase L chain ATP- binding [Catenulispora
           acidiphila DSM 44928]
 gi|256356522|gb|ACU70019.1| Carbamoyl-phosphate synthase L chain ATP- binding [Catenulispora
           acidiphila DSM 44928]
          Length = 459

 Score = 88.3 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 36/219 (16%), Positives = 80/219 (36%), Gaps = 17/219 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   ED     + +   + +            DK  ++++++  G+PV P    
Sbjct: 77  AIHPGYGFLSEDPDFAEVCQTHGVTFIGPPPHVIEKLGDKALARRLMAEAGLPVLPGSTG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
            +            I  P ++K + GG   GI V++    +     ++ +        ++
Sbjct: 137 AVNGLAEARKVAERIGYPLILKAVAGGGGRGIAVVRAADQLTQAYRETCAHARAVFGDER 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           L IE++V D   +   V+ D       +        S + +Y  L         +P ++ 
Sbjct: 197 LYIERFVEDARHIEVQVLCDRHGGAVHLGERD---CSVQRRYQKL-IEEAPAPNLPDELR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
           +++   A     A+G  G +  +F+          +E+N
Sbjct: 253 QQMCAAAVRGALAVGYVGAATFEFVVS-SDGSFHLMEVN 290


>gi|193872886|gb|ACF23133.1| D-alanine-D-alanine ligase [Streptococcus mitis]
          Length = 96

 Score = 88.3 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 49/96 (51%), Gaps = 2/96 (2%)

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNST 212
               ++ +  ++L+EQ V+  E+  G++G+  +  T     V    FY Y+ KY     T
Sbjct: 1   ALKLAFQYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGKVVKDVAFYDYDAKYIDNKIT 60

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
             +PAKI  D+   +++ A  A +AIG   +SR DF
Sbjct: 61  MDIPAKISDDVVAVMRQNAETAFRAIGGLALSRCDF 96


>gi|227115089|ref|ZP_03828745.1| urea amidolyase [Pectobacterium carotovorum subsp. brasiliensis
           PBR1692]
          Length = 1204

 Score = 88.3 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 33/204 (16%), Positives = 69/204 (33%), Gaps = 14/204 (6%)

Query: 70  AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---QHLISP 126
           A  E   I +             K R++++ ++ GVP+ P   +     D+      I  
Sbjct: 93  AACEKAGIAFVGPTAQQIGEFGLKHRARELAAAAGVPMTPGTPLLASLEDALVAAEDIGY 152

Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQLLIEQYVD-GIELTCGV 181
           P ++K   GG  +G+      +++             +     + +E+ +D    +   +
Sbjct: 153 PVMLKSTAGGGGIGLTRCANAEALQAAWESVRRLGEQFFSDAGVFLERCIDRARHVEVQI 212

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGC 240
            GD    V  +           L+  +       PA  +P      +   A    + +  
Sbjct: 213 FGDGKGRVVALGE-----RDCSLQRRNQKVVEETPAPHLPDATRAALLASAVKLGELVNY 267

Query: 241 RGISRSDFLFDPLSRKVFWLEINV 264
           R     +F++D      F+LE+N 
Sbjct: 268 RSAGTVEFIYDAERDAFFFLEVNT 291


>gi|56696064|ref|YP_166418.1| pyruvate carboxylase [Ruegeria pomeroyi DSS-3]
 gi|56677801|gb|AAV94467.1| pyruvate carboxylase [Ruegeria pomeroyi DSS-3]
          Length = 1145

 Score = 88.3 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 39/229 (17%), Positives = 80/229 (34%), Gaps = 30/229 (13%)

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV 105
           L    PD            D  VQ       I +            DK  +++V  + GV
Sbjct: 87  LLSENPDFV----------DACVQN-----GITFIGPRAETMRSLGDKASARKVAIAAGV 131

Query: 106 PVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ----- 156
           PV P+  V    MD+       I  P ++K   GG   G+  I  ++ +   +++     
Sbjct: 132 PVIPATEVLGDDMDAIRKEAAEIGYPLMLKASWGGGGRGMRPIHSEKELAEKVMEGRREA 191

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216
            +++ +G+  L +  +    +   ++GD   ++  +           ++  +       P
Sbjct: 192 EAAFGNGEGYLEKMIIRARHVEVQILGDKHGEIYHLWE-----RDCSVQRRNQKVVERAP 246

Query: 217 AK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           A  +     +E+  L       +        +FL D  S   +++E+N 
Sbjct: 247 APYLSQAQREELCDLGRRICAHVNYECAGTVEFLMDMDSGNFYFIEVNP 295


>gi|302560530|ref|ZP_07312872.1| acetyl/propionyl-CoA carboxylase, alpha subunit [Streptomyces
           griseoflavus Tu4000]
 gi|302478148|gb|EFL41241.1| acetyl/propionyl-CoA carboxylase, alpha subunit [Streptomyces
           griseoflavus Tu4000]
          Length = 648

 Score = 88.3 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 84/221 (38%), Gaps = 17/221 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---- 109
            +H  +G   E+           + +      A AL  DK+R+K+ V + GVPV P    
Sbjct: 77  AVHPGYGFLAENAGFARACAEAGLVFIGPPADAIALMGDKIRAKETVKAAGVPVVPGSSG 136

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
           S L +    ++   I  P ++KP  GG   G+ +++    +  ++  +          D 
Sbjct: 137 SGLTDEQLAEAAREIGVPVLLKPSAGGGGKGMRLVRDVSVLADEIAAARREARASFGDDT 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           LL+E+++D    +   V+ D   +V  +   +        K             +  +  
Sbjct: 197 LLVERWIDRPRHIEIQVLADGHGNVVHLGERECSLQRRHQKII----EEAPSVLLDEETR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLS-RKVFWLEINV 264
             +   A  A ++ G RG    +F+         +++E+N 
Sbjct: 253 AAMGEAAVQAARSCGYRGAGTVEFIVPGNDPSSYYFMEMNT 293


>gi|120431549|gb|ABM21735.1| PdmP1 [Actinomadura hibisca]
          Length = 448

 Score = 88.3 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 34/219 (15%), Positives = 75/219 (34%), Gaps = 18/219 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   ED       E   + +        A   DK  +++     G+PV P  + 
Sbjct: 77  AVHPGYGFLSEDPDFARACESEGLTFIGPPASVLAQLGDKSLAREAAVEAGLPVLPGRVR 136

Query: 114 N----RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ----SSSWNHGDQ 165
                +    +      P +IK + GG   G+ +++    +     +    + +     +
Sbjct: 137 PLEDGKSARRAAEEAGYPVIIKAVAGGGGRGMTIVRDPDDLLRAYAETRATAFALFGDGR 196

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+Y++G   +   V+ D    V  +            K             +P  + 
Sbjct: 197 VYLERYLEGARHVEVQVLADGHGTVLALGARDCSVQRRRQK----LVEESPAPGLPDGLV 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
           +++   A    +A G  G    +FL        +++E+N
Sbjct: 253 EQMCEAAVQGARAAGYVGAGTYEFLV--GDDGFYFMEVN 289


>gi|20094191|ref|NP_614038.1| carbamoylphosphate synthase large subunit [Methanopyrus kandleri
           AV19]
 gi|19887210|gb|AAM01968.1| Carbamoylphosphate synthase large subunit [Methanopyrus kandleri
           AV19]
          Length = 379

 Score = 88.3 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 41/195 (21%), Positives = 80/195 (41%), Gaps = 20/195 (10%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIK 131
           LE   I    S   +  + +DK+R+K+      VP     +V     + +  ISPP V+K
Sbjct: 85  LEAEGIRVVASDRESVEIGIDKVRTKRAFEELNVPTPEWEVV----ENERPSISPPVVVK 140

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
             +  + LG+ V +  +                + L+E++++G E++  V+      V  
Sbjct: 141 DPRSQAGLGVTVHETHKP-----------RVSGRKLVEEFIEGAEVSIEVLSWDGEVVPL 189

Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
           + V K            ++   + PA I   + ++++R A    + +G  G    DF   
Sbjct: 190 VPVFKGSTADRRH---PIDRMRMSPAPIDPSVERKIRRCAVRVVEHLGLEG--NVDFDVV 244

Query: 252 PLSRKVFWLEINVQP 266
               + ++LE N +P
Sbjct: 245 VRENEFWFLEFNPRP 259


>gi|83415076|dbj|BAE53797.1| D-alanine:D-alanine ligase [Streptococcus mitis]
 gi|193873068|gb|ACF23224.1| D-alanine-D-alanine ligase [Streptococcus mitis]
          Length = 96

 Score = 88.3 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 30/96 (31%), Positives = 50/96 (52%), Gaps = 2/96 (2%)

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNST 212
               ++ +  ++L+EQ V+  E+  G++G+  +  T     V    FY Y+ KY     T
Sbjct: 1   ALELAFRYDSRVLVEQGVNAREIEVGLLGNYYVKSTLPGEVVKDVAFYDYDAKYIDNKIT 60

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
             +PAKI  D+   +++ A  A +AIG  G+SR DF
Sbjct: 61  MDIPAKIGDDVVAVMRQNAETAFRAIGGLGLSRCDF 96


>gi|332880327|ref|ZP_08448005.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Capnocytophaga
           sp. oral taxon 329 str. F0087]
 gi|332681772|gb|EGJ54691.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Capnocytophaga
           sp. oral taxon 329 str. F0087]
          Length = 503

 Score = 88.3 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 49/243 (20%), Positives = 94/243 (38%), Gaps = 22/243 (9%)

Query: 34  SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDK 93
           S +++DR +  V    K D      +G   E+       + + I +            DK
Sbjct: 59  SYLNIDR-IIDVAVKCKADAVHPG-YGFLSENAEFVRRCDAVGIIFIGPTADTMEAMGDK 116

Query: 94  MRSKQVVSSCGVPVCPSILVNRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQS 149
           + ++Q + + GVPV P         D        I  P ++K   GG   G+ +I  +  
Sbjct: 117 IAARQRMMAAGVPVVPGTAEPLKDADEALRICKEIGFPVMLKASMGGGGKGMRLIHSEDE 176

Query: 150 IPLDLLQSSSWNH----GDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYEL 204
           +      + S +      D + +E++V+    +   ++GDA  +V  +       +  E 
Sbjct: 177 VKEAYDSARSESMSSFGDDTVYLEKFVEEPHHIEFQILGDAYGNVVHL-------FDREC 229

Query: 205 KYSSLNSTHVLPAK---IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
                N   V  +    +  ++ +E+   A  A +A+  RG    +FL D   R  ++LE
Sbjct: 230 SVQRRNQKIVEESPSPFLTPELRREMGEKAVAAARAVNYRGAGTIEFLVDKY-RHFYFLE 288

Query: 262 INV 264
           +N 
Sbjct: 289 MNT 291


>gi|256378279|ref|YP_003101939.1| carbamoyl-phosphate synthase L chain ATP- binding [Actinosynnema
           mirum DSM 43827]
 gi|255922582|gb|ACU38093.1| Carbamoyl-phosphate synthase L chain ATP- binding [Actinosynnema
           mirum DSM 43827]
          Length = 1827

 Score = 88.3 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 39/214 (18%), Positives = 77/214 (35%), Gaps = 13/214 (6%)

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVNR 115
           G   ED L   + + + + +      A     DK+ +K +    GVPV P     +    
Sbjct: 88  GFVAEDPLFAELCDRIGVTFIGPSAEAMRKLGDKIGAKLIAEEVGVPVAPWSKGEVATLE 147

Query: 116 FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQLLIEQY 171
             + +   I  P ++K   GG   GI ++   + +         ++        + +E+ 
Sbjct: 148 DALSAGARIGYPLMLKATAGGGGRGIRMVASAEDLTEAYERTSQEALRAFGSGIVFLERL 207

Query: 172 VDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
           V G   +   V+ D       + V          K    +++ V    +  +   E++  
Sbjct: 208 VTGARHVEVQVIADGQGTAWALGVRDCSVQRRNQKIIEESASPV----LDPEQTAELKAS 263

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           A     A+  RG    +FL+ P  +   +LE+N 
Sbjct: 264 AERLALAVDYRGAGTVEFLYHPGEKLFAFLEVNT 297


>gi|89055206|ref|YP_510657.1| acetyl-CoA carboxylase biotin carboxylase subunit [Jannaschia sp.
           CCS1]
 gi|88864755|gb|ABD55632.1| acetyl-CoA carboxylase biotin carboxylase [Jannaschia sp. CCS1]
          Length = 448

 Score = 88.3 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 71/220 (32%), Gaps = 18/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---- 109
            +H  +G   E+      +E   I +         +  DK+ +K+     G+P  P    
Sbjct: 77  AIHPGYGFLSENAAFVQAVEDHGIKFIGPSAEHIRMMGDKITAKETALRLGIPCVPGSAG 136

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
            +               P ++K   GG   G+ + K    I         ++ +    D+
Sbjct: 137 GVPTVEEARQIGEEFGYPVIVKATAGGGGRGMKLAKSADEIDTAFKSARTEAKAAFGNDE 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+Y+     +   V GD       +            K             I  ++ 
Sbjct: 197 VYIEKYLGTPRHIEVQVFGDGKGHAVHLGERDCSLQRRHQKVF----EEAPGPSITPELR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +  +   A   +G  G    +FL+   + + +++E+N 
Sbjct: 253 DHIGMICANAVGELGYEGAGTIEFLY--ENGEFYFIEMNT 290


>gi|168001228|ref|XP_001753317.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162695603|gb|EDQ81946.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 510

 Score = 88.3 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 79/220 (35%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
           +LH  +G   E+     + +   + +      +  +  DK  +++ + S GVP  P    
Sbjct: 115 MLHPGYGFLAENATFVDMCKDHGLNFIGPNSDSIRVMGDKATARETMKSAGVPTVPGSEG 174

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS----IPLDLLQSSSWNHGDQ 165
            I      +   H I  P +IK   GG   G+ +  +       +     ++ +    D 
Sbjct: 175 LIQTTEEAVRLAHEIGFPVMIKATAGGGGRGMRLANEPGEFVKLLQQARSEAGAAFGNDG 234

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+Y+ +   +   V+ D   +V               K             +  ++ 
Sbjct: 235 VYLERYIQNPRHIEFQVLADKHGNVVHFGERDCSIQRRNQKLL----EEAPSPALTPELR 290

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K +   A  A  +IG  G+   +FL D      +++E+N 
Sbjct: 291 KAMGDAAVAATASIGYIGVGTVEFLLDE-GGNFYFMEMNT 329


>gi|254787389|ref|YP_003074818.1| urea carboxylase [Teredinibacter turnerae T7901]
 gi|237686682|gb|ACR13946.1| urea carboxylase [Teredinibacter turnerae T7901]
          Length = 1201

 Score = 88.3 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 43/272 (15%), Positives = 89/272 (32%), Gaps = 30/272 (11%)

Query: 39  DRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQ 98
              +  ++A    D      +G   E+    A  +   I +             K  ++ 
Sbjct: 63  TEKLFAIMAQAGVDAVHPG-YGFLSENADFVAECDKRNIAFIGPRPEHMQAFGLKHEARA 121

Query: 99  VVSSCGVPVCPSILVNRFTMDS---QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
           +  +  VP+ P   +     ++      I  P ++K   GG  +G+ V K    +  +  
Sbjct: 122 LAVAQQVPLLPGSDLLDSEDEALLAAATIGYPIILKSTAGGGGIGMQVCKDAAELQKNFA 181

Query: 156 QSSSWNHG----DQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLN 210
                       D + IE+Y++    +   V GD + +                +     
Sbjct: 182 SVKRLGANNFANDGVFIEKYIEFARHIEVQVFGDGAGNAVAFGE-----RDCSAQRRHQK 236

Query: 211 STHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
                PA  IP D+  ++   A     A+        +F++D  + + ++LE+N      
Sbjct: 237 VIEETPAPNIPDDVRSQLHLTATKLLAAVNYLNAGTVEFIYDQNTHQFYFLEVNT----- 291

Query: 270 PVSIFPEMAAYAGYSFR----ELLLWMVEDAS 297
                  +    G +      +L+ WMV  A+
Sbjct: 292 ------RLQVEHGVTEEVFKVDLVAWMVRQAA 317


>gi|298489651|ref|YP_003719828.1| acetyl-CoA carboxylase biotin carboxylase ['Nostoc azollae' 0708]
 gi|298231569|gb|ADI62705.1| acetyl-CoA carboxylase, biotin carboxylase ['Nostoc azollae' 0708]
          Length = 448

 Score = 88.3 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 79/221 (35%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     I    +I +      A  L  DK  +K+ +   GVP  P    
Sbjct: 78  AIHPGYGFLAENARFAEICADHQIVFIGPTPEAIRLMGDKSTAKETMQKAGVPTVPGSDG 137

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS-----IPLDLLQSSSWNHGD 164
            +  ++        I  P +IK   GG   G+ ++  +       +       +++ +  
Sbjct: 138 LVESDQEGKLIAKDIGYPVMIKATAGGGGRGMRLVLSEDEFVKLFLAAQGEAGAAFGNAG 197

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            + IE+ ++    +   ++ D+  +V  +            K             +  ++
Sbjct: 198 -VYIEKSIERPRHIEFQILADSYGNVIHLGERDCSIQRRNQKLL----EEAPSPALDEEL 252

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + + + A  A + I   G    +FL D    K +++E+N 
Sbjct: 253 RERMGQAAVKAARFINYTGAGTIEFLLDKS-GKFYFMEMNT 292


>gi|194333134|ref|YP_002014994.1| acetyl-CoA carboxylase, biotin carboxylase [Prosthecochloris
           aestuarii DSM 271]
 gi|194310952|gb|ACF45347.1| acetyl-CoA carboxylase, biotin carboxylase [Prosthecochloris
           aestuarii DSM 271]
          Length = 448

 Score = 87.9 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 78/220 (35%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     +     I +            DK  +K+ + + GVPV P    
Sbjct: 78  AIHPGYGFLAENADFAEVCNASGIKFIGPTAEMIRKMGDKNSAKETMIAAGVPVIPGSDG 137

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
            +      + +   I  P +IKP  GG   G+ V+ + + I   LL    ++        
Sbjct: 138 LVRDTAHALKTAEKIGYPVIIKPTAGGGGKGMRVVNEPEKIQKALLTSQNEAQQAFGNSG 197

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE++V+    +   ++ D   +   +            K             +   + 
Sbjct: 198 VYIEKFVESPRHVEIQILADQHGNTMHLGERDCTIQRRHQK----LIEETPSPVVDEALR 253

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            E+   A  A  AI   G    +FL D   RK +++E+N 
Sbjct: 254 NEMGNAAVAAASAINYEGAGTIEFLLD-SDRKFYFMEMNT 292


>gi|294013307|ref|YP_003546767.1| biotin carboxylase [Sphingobium japonicum UT26S]
 gi|292676637|dbj|BAI98155.1| biotin carboxylase [Sphingobium japonicum UT26S]
          Length = 450

 Score = 87.9 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 77/220 (35%), Gaps = 18/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     I+E   I +         +  DK+ +K+   + G+P+ P    
Sbjct: 78  AIHPGYGFLSENAQFAEIVEAHNIAFVGPKPEHIRIMGDKVEAKRTAGALGLPLVPGSDG 137

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSWNHGDQ 165
            I       +    I  P +IK   GG   G+ V+  +  +         ++ +    D 
Sbjct: 138 AISDIAEAKEIAARIGYPVLIKAASGGGGRGMKVVPSEDLLETSMKQAGSEAKAAFGDDT 197

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+Y+ +   +   V GD + +   +            K             +     
Sbjct: 198 VYMEKYLGNPRHIEFQVFGDGNGNAIHLGERDCSLQRRHQKVL----EEAPSPVLSAAER 253

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +  +   A   +G RG    +FL+     + +++E+N 
Sbjct: 254 DRMGEVVRKAMADMGYRGAGTIEFLW--EDGEFYFIEMNT 291


>gi|91224769|ref|ZP_01260029.1| putative acyl-CoA carboxylase alpha chain [Vibrio alginolyticus
           12G01]
 gi|91190315|gb|EAS76584.1| putative acyl-CoA carboxylase alpha chain [Vibrio alginolyticus
           12G01]
          Length = 682

 Score = 87.9 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 82/221 (37%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+  +        I +      A      K ++K ++S   VP+ P    
Sbjct: 77  AIHPGYGFLSENPKLAKACSENGIVFIGPPTSAIEAMGSKSQAKAIMSEANVPLVPGYHG 136

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
              +++        I  P ++K  +GG   G+ V+     +PL +     ++ S     Q
Sbjct: 137 TDNSVEHLLAEAEKIGYPVMLKATQGGGGKGMRVVNSAAEMPLAIDGAQREALSSFGDKQ 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           LLIE+ +     +   V  D   +   ++           K          PA  +  ++
Sbjct: 197 LLIEKCILQPRHVEVQVFADQRGNCVYLSDRDCSIQRRHQK-----VVEEAPAPGLSDEL 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            K++   A  A QAI   G    +FL D    + +++E+N 
Sbjct: 252 RKQMGEAAVQAAQAIDYVGAGTVEFLLDSR-GQFYFMEMNT 291


>gi|310814895|ref|YP_003962859.1| pyruvate carboxylase [Ketogulonicigenium vulgare Y25]
 gi|308753630|gb|ADO41559.1| pyruvate carboxylase [Ketogulonicigenium vulgare Y25]
          Length = 1146

 Score = 87.9 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 81/221 (36%), Gaps = 18/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       +   I +            DK  +++V  + GVPV P+  V
Sbjct: 80  AIHPGYGLLSENPEFVEACDAAGITFIGPKAETMRALGDKASARKVAVAAGVPVIPATEV 139

Query: 114 NRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-----SSSWNHGD 164
               +D+       I  P ++K   GG   G+  I   + +   + +      +++ +G+
Sbjct: 140 LGEDIDAVRDEAAAIGYPLMLKASWGGGGRGMRPINGPEELAEKVREGRREAEAAFGNGE 199

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
             L +  +    +   ++GD    +  +           ++  +       PA  +  + 
Sbjct: 200 GYLEKMILRARHVEVQILGDKHGQIYHLWE-----RDCSVQRRNQKVVERAPAPYLTQEQ 254

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +E+  L     Q +        +FL D  S K +++E+N 
Sbjct: 255 REEICDLGRRICQHVNYECAGTVEFLMDMDSGKFYFIEVNP 295


>gi|222151736|ref|YP_002560892.1| acetyl-CoA carboxylase, biotin carboxylase subunit homolog
           [Macrococcus caseolyticus JCSC5402]
 gi|222120861|dbj|BAH18196.1| acetyl-CoA carboxylase, biotin carboxylase subunit homolog
           [Macrococcus caseolyticus JCSC5402]
          Length = 449

 Score = 87.9 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 41/223 (18%), Positives = 85/223 (38%), Gaps = 22/223 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     +    +I +            DK  +++ + + GVPV P    
Sbjct: 76  AIHPGYGFLAENSKFARLCAEHDIIFIGPTPETIDKMGDKAEARKTMIAAGVPVIPGSKD 135

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGDQ 165
            I       +    I  P VIK + GG   G+ ++ +++           ++      D+
Sbjct: 136 VIPTIEEAREKAREIGVPLVIKAVAGGGGKGMRIVSREEDFDNLFHAAKNEAKKAFGDDR 195

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK---IPL 221
           + IE+++     +   V+GD   D   +       Y  +      N   +  A    +P 
Sbjct: 196 VYIEKFIKTARHIEVQVIGDGHGDAVHL-------YDRDCSIQRNNQKLIEEAPAVIVPD 248

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           ++   +   A  A + I  RG    +FL+   +++ ++LE+N 
Sbjct: 249 EVRARMTTDAVTAAKNISYRGAGTLEFLYVEETQEYYFLEMNT 291


>gi|163783209|ref|ZP_02178203.1| biotin carboxylase [Hydrogenivirga sp. 128-5-R1-1]
 gi|159881543|gb|EDP75053.1| biotin carboxylase [Hydrogenivirga sp. 128-5-R1-1]
          Length = 477

 Score = 87.9 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 47/289 (16%), Positives = 102/289 (35%), Gaps = 46/289 (15%)

Query: 13  EVSLSSGKACASALEDAGF---------KVSQIDVDRSVGLVLAHLKP-----DLAFNV- 57
           EV+L        A ++ G           V  + V ++    L    P     D    V 
Sbjct: 12  EVALR----IIRACKELGIKTVAIYSEADVRSLYVKKADEAYLIPGDPIRAYLDYVRIVD 67

Query: 58  ---------LHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV 105
                    +H  +G   E+       +   I +            DK+++K+V+S  G+
Sbjct: 68  LARQVGADAIHPGYGFLAENADFARYCQRRGITFIGPTPDQIETFGDKVKAKKVMSEAGL 127

Query: 106 PVCPSILVN----RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQS 157
           PV P +          +     I  P ++K   GG   G+ V+  ++ +         ++
Sbjct: 128 PVVPGVPEPITDVEEALKFAREIGFPVILKAAYGGGGRGMRVVYSEEDLKTAFESAYREA 187

Query: 158 SSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216
            ++     + +E+++D    +   V+GD   ++  +            K        + P
Sbjct: 188 ETFFGKGDIFVEKFIDNPKHIEVQVLGDKYGNIIHLGERDCSIQRRHQKL-----IEIAP 242

Query: 217 AK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +  +P D+  ++   A  +   +G       +FL D  + + +++E+N 
Sbjct: 243 SPALPQDLRMKILGNAVRSLMKVGYENAGTLEFLVDTRTGEYYFIEMNT 291


>gi|126729540|ref|ZP_01745353.1| methylcrotonyl-CoA carboxylase, alpha subunit [Sagittula stellata
           E-37]
 gi|126709659|gb|EBA08712.1| methylcrotonyl-CoA carboxylase, alpha subunit [Sagittula stellata
           E-37]
          Length = 646

 Score = 87.9 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 43/225 (19%), Positives = 83/225 (36%), Gaps = 23/225 (10%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+    A +E   + +      A      K  +K+++   GVPV P  + 
Sbjct: 79  AIHPGYGFLSENPDFVAEVEAAGLVFIGPSADAIRKMGLKDAAKRLMEEAGVPVVPGYMG 138

Query: 114 NRFT----MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG----DQ 165
                         +  P +IK + GG   G+  + + +     L ++ +   G    D 
Sbjct: 139 GDQDPGHLEAEAETVGYPVLIKAVAGGGGKGMRRVDRAEDFIDALERAKAEARGAFGNDD 198

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDI 223
           +LIE++++    +   V GD +  V              L+          PA  +P ++
Sbjct: 199 VLIEKFIEKPRHIEVQVFGDGTRAV------HLFERDCSLQRRHQKVIEEAPAPDMPENV 252

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR----KVFWLEINV 264
              +   A  A +AIG  G    +F+ D          +++E+N 
Sbjct: 253 RAAMGEAAVRAAEAIGYSGAGTVEFIVDGADGLRADGFWFMEMNT 297


>gi|148229681|ref|NP_001086068.1| methylcrotonoyl-CoA carboxylase 1 (alpha) [Xenopus laevis]
 gi|49256076|gb|AAH74151.1| MGC81895 protein [Xenopus laevis]
          Length = 716

 Score = 87.9 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 83/221 (37%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H  +G   E+     + +   I +      A      K  SK ++S  GVPV      
Sbjct: 118 AIHPGYGFLSENTEFAELCKKERIIFIGPPSSAIRDMGIKSTSKAIMSEAGVPVIEGYHG 177

Query: 113 ---VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD----QSIPLDLLQSSSWNHGDQ 165
               ++   +    I  P +IK ++GG   G+ + K +    + +     ++    + D 
Sbjct: 178 DDQSDQHLKEQAGRIGYPVMIKAVRGGGGKGMRIAKSEEDFFEQLESARREAKKSFNDDV 237

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDI 223
           +LIE++V+    +   V GD   +   +           ++          P   I  ++
Sbjct: 238 MLIEKFVENPRHVEVQVFGDQHGNAVYL-----FERDCSVQRRHQKIIEEAPGPGISPEV 292

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +++   A  A +A+   G    +F+ D      +++E+N 
Sbjct: 293 RRKLGEAAVRAAKAVNYVGAGTVEFIMDSKHN-FYFMEMNT 332


>gi|254502523|ref|ZP_05114674.1| pyruvate carboxylase [Labrenzia alexandrii DFL-11]
 gi|222438594|gb|EEE45273.1| pyruvate carboxylase [Labrenzia alexandrii DFL-11]
          Length = 1146

 Score = 87.9 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 80/221 (36%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E        E   I +            +K+ ++ +    GVPV P+   
Sbjct: 79  AIHPGYGLLSESPEFVDACETAGITFIGPKSETMRRLGNKVAARNLAIEAGVPVMPATDP 138

Query: 114 NRFTMDSQHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
               ++        I  P ++K   GG   G+ VI  + ++  ++L    ++ +    D+
Sbjct: 139 LPEDLNEIKKQALQIGYPVMLKASWGGGGRGMRVIPDEATLEKEVLAAKREAKAAFGKDE 198

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           + +E+ V     +   ++GD        +V         ++          PA  +    
Sbjct: 199 IYLEKLVQRARHVEVQILGDGD------SVVHLFERDCSIQRRHQKVVERAPAPYLDDAK 252

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             E+        +A+  RG    +FL D  +  ++++E+N 
Sbjct: 253 RTELCEYGLKIGRAVNYRGAGTVEFLMDADTGAIYFIEVNP 293


>gi|254428280|ref|ZP_05041987.1| urea carboxylase [Alcanivorax sp. DG881]
 gi|196194449|gb|EDX89408.1| urea carboxylase [Alcanivorax sp. DG881]
          Length = 1196

 Score = 87.9 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 41/272 (15%), Positives = 88/272 (32%), Gaps = 30/272 (11%)

Query: 39  DRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQ 98
             ++  ++     D      +G   E+       E   I +             K  ++ 
Sbjct: 63  QDALFALMQEHGVDAVHPG-YGFLSENPDFVKGCEARGIAFIGPTPEQMNTFGLKHTARA 121

Query: 99  VVSSCGVPVCPSILV---NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
           +    GVP+     +       + +   I  P ++K   GG  +G+ V +   S+     
Sbjct: 122 LAEETGVPLLSGTALLTDKSAALSAADTIGYPIMLKSTAGGGGIGMQVCENAASLDKAWD 181

Query: 156 QSSSWN----HGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLN 210
                +      D + IE+Y+     +   V GD   +   +            +     
Sbjct: 182 TVRRLSANNFSNDGVFIEKYIARARHIEVQVFGDGQGNAITLGE-----RDCSAQRRHQK 236

Query: 211 STHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
                PA  +P  +  ++   A    +A+  R     +F+ D  S   ++LE+N      
Sbjct: 237 VLEETPAPNLPDAVRADLHATAKNLMEAVHYRNAGTVEFILDQDSNAFYFLEVNT----- 291

Query: 270 PVSIFPEMAAYAGYS---FR-ELLLWMVEDAS 297
                  +    G +   +  +L+ WM++ A+
Sbjct: 292 ------RLQVEHGVTEQVYGVDLVEWMLQLAA 317


>gi|254465175|ref|ZP_05078586.1| acetyl-CoA carboxylase, biotin carboxylase [Rhodobacterales
           bacterium Y4I]
 gi|206686083|gb|EDZ46565.1| acetyl-CoA carboxylase, biotin carboxylase [Rhodobacterales
           bacterium Y4I]
          Length = 449

 Score = 87.9 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 78/220 (35%), Gaps = 18/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---- 109
            +H  +G   E+     I+E   + +         +  DK+ +K+   + G+PV P    
Sbjct: 77  AIHPGYGFLSENANFVQIIEDHGLTFIGPSAEHIRIMGDKITAKETAKNLGIPVVPGSEG 136

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGDQ 165
            +        +   +  P +IK   GG   G+ V K ++ +         ++ +    D+
Sbjct: 137 GVPDIAAAKKAAKDMGYPVIIKATAGGGGRGMKVAKDEKELVSAFSTARSEAKAAFGNDE 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+Y+     +   V GD       +A           K             I  +  
Sbjct: 197 VYMEKYLQKPRHIEVQVFGDGKGTGVHLAERDCSLQRRHQKVF----EEAPGPCITPEER 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             + ++   A   +G  G    +FL+     + +++E+N 
Sbjct: 253 ARIGKICADAIGKMGYSGAGTVEFLY--EDGEFYFIEMNT 290


>gi|322378740|ref|ZP_08053169.1| biotin carboxylase [Helicobacter suis HS1]
 gi|322380588|ref|ZP_08054740.1| biotin carboxylase [Helicobacter suis HS5]
 gi|321146910|gb|EFX41658.1| biotin carboxylase [Helicobacter suis HS5]
 gi|321148770|gb|EFX43241.1| biotin carboxylase [Helicobacter suis HS1]
          Length = 447

 Score = 87.9 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 45/264 (17%), Positives = 92/264 (34%), Gaps = 35/264 (13%)

Query: 49  LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
            + D  F   +G   E+     I     + +        AL  DK ++K  +   GVPV 
Sbjct: 75  FEADAIFPG-YGFLSENQNFVEICSHHGLEFIGPSAQVMALMGDKSKAKTCMQEVGVPVV 133

Query: 109 PS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSW 160
                 +      ++    I  P +IK   GG   G+ V+     +         ++ S 
Sbjct: 134 EGSEGILKSYDQALEVAKRIGFPIIIKAANGGGGRGMRVVSDPALLKNLYLAAETEALSA 193

Query: 161 NHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-K 218
                + IE+++ +   +   ++ D   +V  +          + K          PA  
Sbjct: 194 FGDGSVYIEKFIQNPKHIEVQILADKHGNVVHVGERDCSTQRRQQKL-----IEETPALA 248

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278
           +  ++ +++   A  A + IG  G    +FL D      +++E+N +             
Sbjct: 249 LKEEVREKLLATAIKAAKHIGYVGAGTFEFLLDANGVDFYFMEMNTR----------LQV 298

Query: 279 AY------AGYSFRELLLWMVEDA 296
            +      +G    +L+ WM++ A
Sbjct: 299 EHTVSEMVSGL---DLVEWMIKIA 319


>gi|83414205|dbj|BAE53893.1| D-alanine:D-alanine ligase [Streptococcus gallolyticus subsp.
           gallolyticus]
 gi|83415066|dbj|BAE53792.1| D-alanine:D-alanine ligase [Streptococcus gallolyticus subsp.
           gallolyticus]
          Length = 96

 Score = 87.9 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 31/96 (32%), Positives = 48/96 (50%), Gaps = 2/96 (2%)

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNST 212
               +  +  ++LIE  V+  E+  G++G+A +  T     V    FY Y+ KY     T
Sbjct: 1   AIDLALKYDSRILIETGVNAREIEVGILGNADVQTTLPGEVVKDVAFYDYDAKYIDNKIT 60

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
             +PA I   I +E++  A  A +AIG  G+SR DF
Sbjct: 61  MDIPAHIDSSIMEEMRGYATTAFRAIGGCGLSRCDF 96


>gi|56478716|ref|YP_160305.1| biotin carboxylase subunit of unknown acetyl-CoA carboxylase-like
           enzyme [Aromatoleum aromaticum EbN1]
 gi|56314759|emb|CAI09404.1| Biotin carboxylase subunit of unknown acetyl-CoA carboxylase-like
           enzyme [Aromatoleum aromaticum EbN1]
          Length = 451

 Score = 87.9 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 38/219 (17%), Positives = 77/219 (35%), Gaps = 16/219 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E      +     + +            DK+ ++++  S GVPV P    
Sbjct: 78  AVHPGYGFLSERADFARLCAANGLTFIGPRPEQLEALGDKISARRLAESVGVPVSPGGP- 136

Query: 114 NRFTMDS---QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQL 166
            R   D+      I  P ++K   GG   G+  +  +  +      +SS          +
Sbjct: 137 TRTAADALLLARKIGFPLLVKAAFGGGGRGMKQVHDEAGLAAAWELASSEASASFGDGTV 196

Query: 167 LIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
            IE++V     +   ++GDA      +A  +    S + +Y  +         +  +  +
Sbjct: 197 FIERFVQAAKHVEVQILGDAHGHRIHLAERE---CSLQFRYQKIL-EEAPCVALSDEARQ 252

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +   A     A+    +   +FL D     + +LE+N 
Sbjct: 253 RLHDYALRIADALDYVSLGTVEFLVDVERGDICFLEVNP 291


>gi|317124433|ref|YP_004098545.1| pyruvate carboxylase [Intrasporangium calvum DSM 43043]
 gi|315588521|gb|ADU47818.1| pyruvate carboxylase [Intrasporangium calvum DSM 43043]
          Length = 1124

 Score = 87.9 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 40/246 (16%), Positives = 84/246 (34%), Gaps = 16/246 (6%)

Query: 28  DAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87
           + G  V       ++         D  +   +G   E+ L+    E   I +        
Sbjct: 53  EEGHPVRSYLDHEAIVAQAVEAGADAIYPG-YGFLSENPLLAEACERAGITFVGPPPSVL 111

Query: 88  ALSMDKMRSKQVVSSCGVPVCPSILVNRF---TMDSQHLISPPYVIKPLKGGSSLGIIVI 144
            L+ +K R+ +   + G+P       ++       +   I  P  +K + GG   G+  +
Sbjct: 112 HLTGNKSRAIEAARAAGLPTLHGSSASQDLASLEAAAAEIGFPVFVKAVSGGGGRGMRRV 171

Query: 145 KKDQSIPLDLLQS-----SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDF 199
            + + +   L  +     S++      L E  V+   +   V+ D + +V          
Sbjct: 172 DRPELLAEALQAAQREAESAFGDPTLYLEEAVVNPRHIEVQVLADGTGEVI-----HLFE 226

Query: 200 YSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
               ++        + PA  +   + +++   A    ++IG R     +FL     R VF
Sbjct: 227 RDCSVQRRHQKVIEIAPAPNLDPQVREQMCADAVAFARSIGYRNAGTVEFLLGEDGRYVF 286

Query: 259 WLEINV 264
             E+N 
Sbjct: 287 I-EMNP 291


>gi|322707564|gb|EFY99142.1| 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [Metarhizium
           anisopliae ARSEF 23]
          Length = 583

 Score = 87.9 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 55/283 (19%), Positives = 95/283 (33%), Gaps = 64/283 (22%)

Query: 31  FKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQA-----ILELLEIPYTHSGIL 85
           ++    D  +           D  FN L G    D  V         E L +P       
Sbjct: 37  YRFIHKDNAQQEIDAAVAEGFDFYFNFLWGTL--DDPVAGTLASRYFESLGLPSCGVRSW 94

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGI---I 142
             + +  K    +     G P  P                 P  +KP  G SS  I    
Sbjct: 95  ERSKT--KNDFYKAARLHGTPPVPG------------ADRFPLFVKPANGCSSQLIDEHS 140

Query: 143 VIKKDQSIPLDL------------------------LQSSSWN----HGDQLLIEQYVDG 174
           V    + + L L                          +SS++      D +++++Y+DG
Sbjct: 141 VCHNQEELDLALGRINKSLHEARVRRAHALGIKDPVEYASSYDPTSQDNDDVVVQEYIDG 200

Query: 175 IELTCGV--MGDASLDVTEIA------VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE 226
            + TC V  MG + + +T           K  F +++LK+       +L  +    +++ 
Sbjct: 201 KDYTCSVVEMGQSCIALTPFVYNTKQTTSKDKFLTFDLKFDQETRIELLQKQHNPTLFER 260

Query: 227 VQRLAFLAHQAIGCRGI---SRSDFLFDPLSRKVFWLEINVQP 266
           +Q++A  A    GC+G       D      + +VF +E+N QP
Sbjct: 261 LQQVALEAFTISGCKGSNMGCDVDLRATT-TGEVFAIEVNPQP 302


>gi|302903805|ref|XP_003048937.1| hypothetical protein NECHADRAFT_47144 [Nectria haematococca mpVI
           77-13-4]
 gi|256729871|gb|EEU43224.1| hypothetical protein NECHADRAFT_47144 [Nectria haematococca mpVI
           77-13-4]
          Length = 368

 Score = 87.9 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 54/252 (21%), Positives = 93/252 (36%), Gaps = 34/252 (13%)

Query: 77  IPYTHSGILASALSMDKMRSKQVVSSCG-VPVCPSILVNRF---TMDSQHL-ISPPYVIK 131
           I     G L      DK     ++ + G   +  S  +N       D Q L +  P V K
Sbjct: 112 IRVVCQGPLIVERYDDKEFVNDLLRNIGGFTMPRSWTINESPNVEQDIQQLNLPFPVVAK 171

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA------ 185
           P++G  S G+ V    Q +       S +     +++E+++ G E T  VM         
Sbjct: 172 PIRGRGSHGVRVCHDSQEL--ADHARSLFKESPAIMLEEFLSGEEATVTVMPPGPGRDNY 229

Query: 186 -SLDVTEIAVPKSDFYSYELKYS-----SLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
            +L V    V + +       Y+     + NS  +   +     Y++V      A + +G
Sbjct: 230 WALPV----VTRFNHVDGVAPYNGTVAVTANSRAITADEGNEPTYQQVAAECERAARELG 285

Query: 240 CRGISRSDF--LFDPLSRKVFWLEINVQPGMT---------PVSIFPEMAAYAGYSFREL 288
                R D     D    K    ++N++P MT           S+     A  G+ ++EL
Sbjct: 286 VTAPIRIDVRRFKDSADSKFALFDVNMKPNMTGPGRPGREDQASLTLLGGAALGWDYQEL 345

Query: 289 LLWMVEDASCLR 300
           L  ++  +S LR
Sbjct: 346 LRRILSTSSTLR 357


>gi|320168344|gb|EFW45243.1| pyruvate carboxylase [Capsaspora owczarzaki ATCC 30864]
          Length = 1208

 Score = 87.9 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 55/283 (19%), Positives = 101/283 (35%), Gaps = 41/283 (14%)

Query: 12  REVSLSSGK--------ACASALEDAGFKVS---------QIDVDRSVGLVLAHLKPDLA 54
            E+SL +          A   +  D  ++VS          +DVDR V L +        
Sbjct: 79  HELSLRTVAIYSLADRFAMHRSKADEAYEVSGPNVTPVGAYLDVDRIVALAVKSG----- 133

Query: 55  FNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
              +H  +G   E+      +E   I +            DK +++     CGVPV P  
Sbjct: 134 VRAIHPGYGFLSENSTFARAVEKAGIVFVGPDPDVIDKMGDKTQARTAAIECGVPVVPGS 193

Query: 112 LVNRFTMDSQHLI----SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHG 163
                ++++          P +IK   GG   G+ VI+ +  +    L    ++ S    
Sbjct: 194 NGPVPSLEAAEAFVKQHGLPVIIKAAFGGGGRGMRVIRNESELSEGYLRCTSEAKSAFGD 253

Query: 164 DQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPL 221
             + IE+Y++    +   ++ D   +V              ++        V PA  +P 
Sbjct: 254 GTVFIERYIENPRHIEVQILADNYGNVV-----HLFERDCSVQRRHQKVIEVAPAVNLPT 308

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           ++   +   A    + I  R     +FL DP  R  +++E+N 
Sbjct: 309 NVRDAILESALKLARHIKYRNAGTVEFLVDPQHRH-YFIEVNP 350


>gi|210623122|ref|ZP_03293588.1| hypothetical protein CLOHIR_01538 [Clostridium hiranonis DSM 13275]
 gi|210153799|gb|EEA84805.1| hypothetical protein CLOHIR_01538 [Clostridium hiranonis DSM 13275]
          Length = 1147

 Score = 87.9 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 42/243 (17%), Positives = 87/243 (35%), Gaps = 24/243 (9%)

Query: 35  QIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSM 91
            +D+D  +  +    K D     +H  +G   E+       E   I +         L  
Sbjct: 64  YLDMD-GIIALAKRKKVD----AIHPGYGFLAENAEFARKCEENGITFIGPSSEIMDLMG 118

Query: 92  DKMRSKQVVSSCGVPVCPSILV----NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147
           DK+ SK++     V   P +           +    I  P +IK   GG   G+ ++ ++
Sbjct: 119 DKINSKKIAHEVNVQTIPGVEKAIKSTAEAKEVAAQIGYPVMIKASNGGGGRGMRIVHRE 178

Query: 148 QSIPLDLLQSSSWNHG----DQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSY 202
           + + L+   + S +      D + IE+Y+ D   +   ++GD   ++  +          
Sbjct: 179 EDLELEYETACSESRKAFGEDIIFIEKYIEDPKHIEVQILGDQYGNLVHLYE-----RDC 233

Query: 203 ELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
            ++          PA  +     +E+   A    + +G       +FL D      +++E
Sbjct: 234 SVQRRHQKIIEYAPAFSLSEKTRQEICADAVKLAKHVGYSSAGTLEFLVDKHGNH-YFIE 292

Query: 262 INV 264
           +N 
Sbjct: 293 MNT 295


>gi|77919721|ref|YP_357536.1| acetyl-CoA carboxylase/biotin carboxylase [Pelobacter carbinolicus
           DSM 2380]
 gi|77545804|gb|ABA89366.1| acetyl-CoA carboxylase/biotin carboxylase [Pelobacter carbinolicus
           DSM 2380]
          Length = 445

 Score = 87.9 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 79/220 (35%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+     I E   I +         L  DK+R++Q V+  GVP+ P    
Sbjct: 77  AIHPGYGFLAENAEFAEICEECGITFIGPSPENMRLMGDKIRARQTVTKAGVPILPGTTE 136

Query: 114 NRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
              T+D        I  P +IK   GG   G+ V+    S+         ++ +     +
Sbjct: 137 GVGTIDQARQIAEEIGYPVIIKATAGGGGRGMKVVHSPASLANAFAAARSEAQAGFGNPE 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE++ +    +   ++ D   +V  +            K             +  +  
Sbjct: 197 VYIEKFCENPRHVEVQILADKHGNVVHLGERDCSIQRRHQKLL----EEAPCPVLTEEQR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K +   A  A ++     +   +FL D  +   +++E+N 
Sbjct: 253 KRMGDCAVAAAKSCNYSSVGTMEFLLDG-NGDFYFMEMNT 291


>gi|194378454|dbj|BAG57977.1| unnamed protein product [Homo sapiens]
          Length = 426

 Score = 87.9 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 39/204 (19%), Positives = 77/204 (37%), Gaps = 16/204 (7%)

Query: 71  ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL----VNRFTMDSQHLISP 126
           + +   I +      A      K  SK ++++ GVPV          ++   +    I  
Sbjct: 6   LCKQEGIIFIGPPPSAIRDMGIKSTSKSIMAAAGVPVVEGYHGEDQSDQCLKEHARRIGY 65

Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQLLIEQYVD-GIELTCGV 181
           P +IK ++GG   G+ +++ +Q     L  +          D +LIE++VD    +   V
Sbjct: 66  PVMIKAVRGGGGKGMRIVRSEQEFQEQLESARREAKKSFNDDAMLIEKFVDTPRHVEVQV 125

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGC 240
            GD   +   +           ++          PA  I  ++ K++   A  A +A+  
Sbjct: 126 FGDHHGNAVYL-----FERDCSVQRRHQKIIEEAPAPGIKSEVRKKLGEAAVRAAKAVNY 180

Query: 241 RGISRSDFLFDPLSRKVFWLEINV 264
            G    +F+ D       ++E+N 
Sbjct: 181 VGAGTVEFIMDSKHN-FCFMEMNT 203


>gi|170698832|ref|ZP_02889894.1| pyruvate carboxylase [Burkholderia ambifaria IOP40-10]
 gi|170136228|gb|EDT04494.1| pyruvate carboxylase [Burkholderia ambifaria IOP40-10]
          Length = 1173

 Score = 87.9 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 45/246 (18%), Positives = 92/246 (37%), Gaps = 25/246 (10%)

Query: 33  VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLV-QAILELLEIPYTHSGILASA 88
            + +D+D  +  V    K D     +H  +G   E+    QA+++   I +         
Sbjct: 66  AAYLDID-DILRVARQAKVD----AIHPGYGFLSENPDFAQAVID-AGIRWIGPSPDVMR 119

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSLGIIVI 144
              +K+ ++    + GVPV P+       +D        +  P ++K   GG   G+ V+
Sbjct: 120 TLGNKVAARNAAIAAGVPVMPATAPLPDDLDVCKALAAEVGYPLMLKASWGGGGRGMRVL 179

Query: 145 KKDQSI----PLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDF 199
           +  Q +    P+   ++ +    D++ +E+ V     +   V+GD    V  +       
Sbjct: 180 ESAQDLETLLPVARREALAAFGNDEVYVEKLVRNARHVEVQVLGDTHGTVVHLYERDCTV 239

Query: 200 YSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
                K          PA  +  D    +   A    +A+G       +FL D  + + +
Sbjct: 240 QRRNQK-----VVERAPAPYLDRDGRHALCESALRLMRAVGYTHAGTVEFLMDADTGQFY 294

Query: 259 WLEINV 264
           ++E+N 
Sbjct: 295 FIEVNP 300


>gi|260903047|ref|ZP_05911442.1| carbamoyl-phosphate synthase L chain, ATP binding domain protein
           [Vibrio parahaemolyticus AQ4037]
 gi|308108381|gb|EFO45921.1| carbamoyl-phosphate synthase L chain, ATP binding domain protein
           [Vibrio parahaemolyticus AQ4037]
          Length = 686

 Score = 87.9 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 80/221 (36%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+  +        I +      A      K ++K ++S   VP+ P    
Sbjct: 77  AIHPGYGFLSENPKLAKACSENSIVFIGPSTSAIEAMGSKSQAKAIMSEANVPLVPGYHG 136

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
              +++        I  P ++K  +GG   G+ V+     +PL +  +           Q
Sbjct: 137 TDNSVEHLLTEAEKIGYPVMLKATQGGGGKGMRVVNSAAEMPLAIDGAQREALSSFGDKQ 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           LL+E+ +     +   V  D   +   ++           K          PA  +  ++
Sbjct: 197 LLVEKCILQPRHVEVQVFADQHGNCVYLSDRDCSIQRRHQK-----VVEEAPAPGLSDEL 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +++   A  A QAI   G    +FL D    + +++E+N 
Sbjct: 252 RQQMGEAAVQAAQAIDYVGAGTVEFLLDSR-GQFYFMEMNT 291


>gi|169631613|ref|YP_001705262.1| putative acyl-CoA carboxylase alpha subunit AccA [Mycobacterium
           abscessus ATCC 19977]
 gi|169243580|emb|CAM64608.1| Putative acyl-CoA carboxylase alpha subunit AccA [Mycobacterium
           abscessus]
          Length = 653

 Score = 87.9 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 41/220 (18%), Positives = 84/220 (38%), Gaps = 16/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       +   I +      A     DK+R+K  V++ G PV P  + 
Sbjct: 74  AIHPGYGFVSENADFVRACQAAGIVFVGPPAEAMDAMGDKIRAKGTVAAAGEPVVPGSVG 133

Query: 114 NRFTMD---SQHLISPPYVIKPLKGGSSLGIIVIKK----DQSIPLDLLQSSSWNHGDQL 166
                +   +   I  P +IKP  GG   G+ V+        ++     ++++    D L
Sbjct: 134 ALSDAELVFTAEKIGAPLIIKPSAGGGGKGMRVVHDLGGISDALVASRREAAALFGDDTL 193

Query: 167 LIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
           L+E+Y+     +   V GD   +V  +   +        K           A +   +  
Sbjct: 194 LVERYLARPRHIEVQVFGDTHGNVVHLGERECSLQRRHQK----VIEEAPSALLTPQLRA 249

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRK-VFWLEINV 264
            + + A    +++G  G    +F+ D  + +  +++E+N 
Sbjct: 250 AMGQTACQIARSVGYFGAGTVEFILDSDAPESYYFMEMNT 289


>gi|329850497|ref|ZP_08265342.1| acetyl-CoA carboxylase, biotin carboxylase [Asticcacaulis
           biprosthecum C19]
 gi|328840812|gb|EGF90383.1| acetyl-CoA carboxylase, biotin carboxylase [Asticcacaulis
           biprosthecum C19]
          Length = 452

 Score = 87.9 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 81/220 (36%), Gaps = 18/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---- 109
            +H  +G   E+     I+    + +         +  DK+ +KQ     G+PV P    
Sbjct: 79  AIHPGYGFLSENAKFADIVSAHGLTFIGPKAEHIRMMGDKITAKQAARDSGIPVVPGSDG 138

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
            +      M +   I  P +IK   GG   G+ V K   S+   ++    ++++      
Sbjct: 139 GVATVEEAMAAAETIGFPVLIKAASGGGGRGMKVAKDRDSLAEAVMSAQSEAAAAFGDGT 198

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+Y+     +   ++ D+  +V  +            K             I     
Sbjct: 199 VYMERYLQKPRHIEIQIIADSHGNVCHLGERDCSLQRRHQKVL----EEAPSPVIDKAAR 254

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            ++ ++   A + IG  G+   +FL+     + F++E+N 
Sbjct: 255 DKIGKVCVDAIKKIGYLGVGTIEFLY--EDGEFFFIEMNT 292


>gi|220907713|ref|YP_002483024.1| urea carboxylase [Cyanothece sp. PCC 7425]
 gi|219864324|gb|ACL44663.1| urea carboxylase [Cyanothece sp. PCC 7425]
          Length = 1209

 Score = 87.9 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 41/258 (15%), Positives = 87/258 (33%), Gaps = 34/258 (13%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+    +  E   I +             K  ++ +    GVP+ P   +
Sbjct: 77  AIHPGYGFLSENVEFASRCEQQGIAFIGPTPEQIRAFGLKHTARALAEQQGVPLVPGTDL 136

Query: 114 NRFTMDSQ---HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQ 165
               +++Q     I  P ++K   GG  +G+ V + +  +     +        +     
Sbjct: 137 LDTLVEAQTAARAIGYPVMLKSTAGGGGIGMQVCRDEAELIAGYEKVQRLSQTNFKQRG- 195

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           + +E+Y+     +   + GD    V  +            K          PA  I   +
Sbjct: 196 VYLEKYLQTARHIEVQIFGDGQGQVVALGERDCSTQRRNQK-----VIEETPAPGISEAL 250

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283
            + +   A    +A+  R     +F+ D  S + ++LE+N             +    G 
Sbjct: 251 RQALYSAAIRLGKAVNYRSAGTVEFILDVESEQFYFLEVNT-----------RLQVEHGI 299

Query: 284 SFR----ELLLWMVEDAS 297
           +      +L+ WM+  A+
Sbjct: 300 TEAVTGLDLVEWMLRVAA 317


>gi|222445056|ref|ZP_03607571.1| hypothetical protein METSMIALI_00673 [Methanobrevibacter smithii
           DSM 2375]
 gi|261350375|ref|ZP_05975792.1| acetyl-CoA carboxylase, biotin carboxylase subunit
           [Methanobrevibacter smithii DSM 2374]
 gi|222434621|gb|EEE41786.1| hypothetical protein METSMIALI_00673 [Methanobrevibacter smithii
           DSM 2375]
 gi|288861158|gb|EFC93456.1| acetyl-CoA carboxylase, biotin carboxylase subunit
           [Methanobrevibacter smithii DSM 2374]
          Length = 497

 Score = 87.9 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 41/236 (17%), Positives = 84/236 (35%), Gaps = 21/236 (8%)

Query: 38  VDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSK 97
           +D ++      + P   F   +  FGE        E   I              DK+ SK
Sbjct: 67  IDIALESGADAIHPGYGFLAENPKFGE------ACEKNGIKLIGPTGDVIHQMGDKITSK 120

Query: 98  QVVSSCGVPV----CPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153
            ++   GVPV       +       +    I  P ++K   GG  +G+  + ++  +   
Sbjct: 121 ALMKKAGVPVIEGTPEGVSDIEEAKEIARQIGYPVIVKASAGGGGIGMRAVYEEDELVRA 180

Query: 154 LL----QSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS 208
           +      +S+      + IE+Y++    +   ++ D   +V  +A  +        K   
Sbjct: 181 IESTQSVASTNFGDSTVFIEKYLEKPRHIEFQLLADEHGNVIHVADRECSIQRRHQKLL- 239

Query: 209 LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
                     +  ++  E+   A  A + IG       +FL+D  + + ++LE+N 
Sbjct: 240 ---EEAPSPIMTEELRAEMGASAVKAAEYIGYTSAGTVEFLYD--NGQYYFLEMNT 290


>gi|262376502|ref|ZP_06069731.1| urea carboxylase [Acinetobacter lwoffii SH145]
 gi|262308641|gb|EEY89775.1| urea carboxylase [Acinetobacter lwoffii SH145]
          Length = 1201

 Score = 87.9 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 32/220 (14%), Positives = 79/220 (35%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+     + E   I +             K  ++++     VP+ P   +
Sbjct: 77  AIHPGYGFLSENAEFCNLCEAQGIVFLGPNAEQMKAFGLKHTARELAIQANVPLLPGSQL 136

Query: 114 NRFTMDS---QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQL 166
                ++      I  P ++K   GG  +G+ ++   + +          + +      L
Sbjct: 137 LADEAEALLEAERIGYPVMLKSTAGGGGIGMRLVWNAEELKEAYATVSYLAQANFKDAGL 196

Query: 167 LIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIY 224
            +E++V +   +   + GD +  V  +           ++  +       PA  +     
Sbjct: 197 YLEKFVQNARHIEVQIFGDGNGLVLALGE-----RDCSVQRRNQKVIEETPAPHLNDTQR 251

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +Q +A    Q++  R     +F+ D  +++ ++LE+N 
Sbjct: 252 AYIQNVAIQLMQSVNYRSAGTVEFVMDTDTQEFYFLEVNT 291


>gi|317470285|ref|ZP_07929679.1| pyruvate carboxylase [Anaerostipes sp. 3_2_56FAA]
 gi|316902258|gb|EFV24178.1| pyruvate carboxylase [Anaerostipes sp. 3_2_56FAA]
          Length = 1172

 Score = 87.9 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 41/244 (16%), Positives = 91/244 (37%), Gaps = 26/244 (10%)

Query: 35  QIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSM 91
            +D+ +++  +      D     +H  +G   E+       E   I +            
Sbjct: 84  YLDI-KTIIRIAKEKNVD----AIHPGYGFLSENPEFVDACERHGITFIGPTSDIMRAMG 138

Query: 92  DKMRSKQVVSSCGVPVCPSILV----NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147
           DK+ SKQ+     VP+ P +       +  ++    +  P ++K   GG   G+ ++   
Sbjct: 139 DKISSKQMAIKADVPIIPGVDHAVHSEKEVIEIAEKVGYPVMLKASNGGGGRGMRIVHTA 198

Query: 148 QSIPLDLLQSS-----SWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYS 201
           + +P +  ++      ++   DQ+ IE+Y+     +   ++GD   +V  +         
Sbjct: 199 EDMPKEYAEARDESKKAFG-DDQIFIEKYLKSPKHIEVQIIGDNYGNVVHLY-----DRD 252

Query: 202 YELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260
             ++          PA  IP +  K +   +    + +G R     +FL D      +++
Sbjct: 253 CSVQRRHQKVVEYAPAFSIPEETRKVIFDSSLRLAKTVGYRNAGTLEFLVDA-DNNPYFI 311

Query: 261 EINV 264
           E+N 
Sbjct: 312 EMNP 315


>gi|83942767|ref|ZP_00955228.1| pyruvate carboxylase [Sulfitobacter sp. EE-36]
 gi|83846860|gb|EAP84736.1| pyruvate carboxylase [Sulfitobacter sp. EE-36]
          Length = 1146

 Score = 87.9 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 34/221 (15%), Positives = 78/221 (35%), Gaps = 18/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+           I +            DK  +++V    GVPV P+  V
Sbjct: 80  AIHPGYGLLSENPDFVDACAQNGITFIGPRAETMRALGDKASARRVAMEAGVPVVPATDV 139

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-----SSSWNHGD 164
               M+        +  P ++K   GG   G+  I  ++ +   +++      +++ +G+
Sbjct: 140 LGDDMEVVRKQAAEVGYPLMLKASWGGGGRGMRPIANEEELKEKVMEGRREAEAAFGNGE 199

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
             L +  +    +   ++GD+  ++              ++  +       PA  +  + 
Sbjct: 200 GYLEKMILKARHVEVQILGDSHGEIY-----HLFERDCSVQRRNQKVVERAPAPYLTEEQ 254

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             E+  L       +        +FL D    K +++E+N 
Sbjct: 255 RAEICELGRKICAHVNYECAGTVEFLMDMDDGKFYFIEVNP 295


>gi|260575572|ref|ZP_05843570.1| acetyl-CoA carboxylase, biotin carboxylase [Rhodobacter sp. SW2]
 gi|259022215|gb|EEW25513.1| acetyl-CoA carboxylase, biotin carboxylase [Rhodobacter sp. SW2]
          Length = 457

 Score = 87.9 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 75/220 (34%), Gaps = 18/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---- 109
            +H  +G   E+      LE  E+ +         +  DK+ +K+ + + GVP  P    
Sbjct: 86  AVHPGYGFLSENAAFAQALEDHELVFIGPTAEHIRIMGDKITAKETMRALGVPCVPGSDG 145

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
            +      +     I  P +IK   GG   G+ V    + + +    + +        D+
Sbjct: 146 GVPDYESAIGVAAGIGFPVIIKATAGGGGRGMKVANNPEELEIAFRTARAEAKSAFGNDE 205

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+Y+     +   V GD       +            K             I   + 
Sbjct: 206 VYIEKYLQKPRHIEVQVFGDGKGRAVHLGERDCSLQRRHQKVL----EEAPGPVITPALR 261

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             + ++   A  AI   G    +FL+     + F++E+N 
Sbjct: 262 ARIGKVCAEAVAAINYIGAGTIEFLY--EDGEFFFIEMNT 299


>gi|304311609|ref|YP_003811207.1| Phosphoribosylaminoimidazole carboxylase, ATPase subunit [gamma
           proteobacterium HdN1]
 gi|301797342|emb|CBL45562.1| Phosphoribosylaminoimidazole carboxylase, ATPase subunit [gamma
           proteobacterium HdN1]
          Length = 695

 Score = 87.5 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 87/221 (39%), Gaps = 18/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E   +  +     I +    + + A    K+ +KQ+     +P  P    
Sbjct: 79  AIHPGYGFLSESTQLITLCNESGIAFVGPSVESIAAMGSKIEAKQIAQQLEIPTIPGYNG 138

Query: 114 NRFT----MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
              +          I  P +IK   GG   G+ ++++    P  L  +          D+
Sbjct: 139 ADQSPTNLQREAEAIGFPVLIKASAGGGGKGMRIVRQSSEFPSALATAKQEALNSFGDDR 198

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDI 223
           +L+E+Y+     +   ++GD   +V  +        S +  Y         PA ++P ++
Sbjct: 199 VLLEKYLTRPRHIEVQLLGDRHGNVVHLF---DRECSIQRNYQ--KVIEEAPASQLPAEV 253

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +++   A    + +  +G    +F++D  +++ ++LE+N 
Sbjct: 254 RQQLWDCATRLGRYLNYQGAGTVEFIYDSEAQRAYFLEMNT 294


>gi|114797946|ref|YP_760003.1| methylcrotonoyl-CoA carboxylase subunit alpha [Hyphomonas neptunium
           ATCC 15444]
 gi|114738120|gb|ABI76245.1| methylcrotonoyl-CoA carboxylase alpha chain [Hyphomonas neptunium
           ATCC 15444]
          Length = 633

 Score = 87.5 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 84/225 (37%), Gaps = 22/225 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      +    + +      A      K  +K++    GVPV P    
Sbjct: 78  AIHPGYGFLSENAAFAEAVVAAGLIWVGPPPSAIRSMGPKDEAKRIAEDAGVPVLPGYRG 137

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
               ++    +   +  P +IK + GG   GI  + K+  +  +L+    ++ S     +
Sbjct: 138 EAQDIETLKKAAKKVGYPLLIKAVAGGGGRGIRQVSKEAELEAELISAVREAESAFGDGR 197

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           +++E+ V     +   V GDA  +V              L+          PA  +P D+
Sbjct: 198 VMLEKLVLQPRHIEVQVFGDAHGNVV-----HLFERDCSLQRRRQKVLEEAPAPGMPEDV 252

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPL----SRKVFWLEINV 264
              +   A    +A+G +G    +F+ D      +   ++LE+N 
Sbjct: 253 RAAMTDAAVKLAKAVGYQGAGTVEFIVDGSRPLAADTFWFLEMNT 297


>gi|220931137|ref|YP_002508045.1| carbamoyl-phosphate synthase, large subunit [Halothermothrix orenii
           H 168]
 gi|254813598|sp|B8D1H3|CARB_HALOH RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|219992447|gb|ACL69050.1| carbamoyl-phosphate synthase, large subunit [Halothermothrix orenii
           H 168]
          Length = 1067

 Score = 87.5 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 52/292 (17%), Positives = 103/292 (35%), Gaps = 38/292 (13%)

Query: 18  SGKACASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLV 68
           S  A   AL+D   +   +         D D S  L    L  +   NV       D ++
Sbjct: 575 SVHAV-RALQDRNVEAIIVNNNPETVSTDFDTSDKLYFEPLTTEYVLNVAEREGITDVIL 633

Query: 69  Q----------AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RF 116
           Q            L    +    +G+ +  L+ D+ +  QV++S  +P  P   V     
Sbjct: 634 QFGGQTAINLAEPLSEAGMNVLGTGLKSINLTEDRKQFNQVLTSEKIPTPPGYTVFSIEE 693

Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
            +   H I  P +++P       G+ ++  +  +   L  +        +LI++Y+ G E
Sbjct: 694 ALKLSHKIGYPVLVRPSYVLGGRGMEIVSNEAELKTYLTDAVKITPEHPVLIDRYIPGRE 753

Query: 177 LTCGVMGDAS---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAF 232
           +    + D +   +      V ++  +S        +S  + PA+ +     + +     
Sbjct: 754 IEVDAISDGNDVLIPGIMEHVERAGVHS-------GDSMAIYPARNLTTKQTRRLVNYTK 806

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
                 G +GI    F+ D    + + LE+N +   T     P ++   G  
Sbjct: 807 KICNLFGIKGIINIQFVLD-RDGQFYVLEVNPRASRT----VPILSKVTGIP 853



 Score = 77.5 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 51/287 (17%), Positives = 111/287 (38%), Gaps = 35/287 (12%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI-----------DVDRSVGL----------V 45
           G ++E + S   G     AL++ G +V  +           D+   V L          +
Sbjct: 21  GQAAEFDYS---GTQACKALKEEGLEVVLVNSNPATIMTDTDIADQVYLEPLTFDYITRI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   KPD     L G  G +  V+     +L+   +    + + A   + D+   ++++ 
Sbjct: 78  IEKEKPDGLLPTLGGQTGLNLAVELAEKGVLDKFGVTLLGTNLEAIQKAEDRNLFRELLD 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G P   S +V+  +  + +   I  P +++P       G  + +  + +   +     
Sbjct: 138 DIGEPFIESKIVDNLKEAVQTAQQIGFPVIVRPAYTLGGSGGGIAENVEELKEIVTLGLK 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +  +Q+LIE+ + G  EL   V+ D + +   I   ++      +   + +S  V P++
Sbjct: 198 RSRINQVLIEKSLYGWKELEYEVIRDGNDNCITICNMEN---IDPVGIHTGDSIVVAPSQ 254

Query: 219 -IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +    Y  ++  +    +A+G  G     F  DP     + +E+N 
Sbjct: 255 TLSDKEYHLLRMASIKIIKALGIEGGCNIQFALDPEGLDYYVIEVNP 301


>gi|297560567|ref|YP_003679541.1| carbamoyl-phosphate synthase L chain ATP-binding protein
           [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
 gi|296845015|gb|ADH67035.1| Carbamoyl-phosphate synthase L chain ATP-binding protein
           [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
          Length = 1827

 Score = 87.5 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 37/214 (17%), Positives = 75/214 (35%), Gaps = 13/214 (6%)

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVNR 115
           G   ED     + E + + +      A     DK+ +K +    GVPV P     +    
Sbjct: 88  GFVAEDPAFAELCERIGVTFVGPSAEAMRKLGDKIGAKLIAEEVGVPVAPWSRGEVATLE 147

Query: 116 FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQLLIEQY 171
             + +   I  P ++K   GG   GI ++   + +         ++        + +E+ 
Sbjct: 148 EALRAGEEIGYPLMLKATAGGGGRGIRMVASGEDLAEAYERTSQEALRAFGSGVVFLERL 207

Query: 172 VDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
           V G   +   ++ D       + V          K    +++ V    +  +    ++  
Sbjct: 208 VTGARHVEVQIIADGQGTAWALGVRDCSVQRRNQKIIEESASPV----LDAEQTAHLKAS 263

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           A     A+  RG    +FL+ P  +   +LE+N 
Sbjct: 264 AERLALAVDYRGAGTVEFLYHPGEKLFAFLEVNT 297


>gi|289432100|ref|YP_003461973.1| acetyl-CoA carboxylase, biotin carboxylase [Dehalococcoides sp. GT]
 gi|288945820|gb|ADC73517.1| acetyl-CoA carboxylase, biotin carboxylase [Dehalococcoides sp. GT]
          Length = 498

 Score = 87.5 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 43/234 (18%), Positives = 90/234 (38%), Gaps = 16/234 (6%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
           +++  V      D      +G   E+      LE   I +         L  +K+ +++ 
Sbjct: 64  KNIVAVAKKSGVDGVHPG-YGFLSENPGFALALEKAGIKFVGPSSRVIELMGNKIAARRE 122

Query: 100 VSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
           +   GVPV P     +       ++   I  P +IKP  GG  +G+ V      +   + 
Sbjct: 123 MKKAGVPVLPGTEGCVSGIEQATEAAAAIGYPVIIKPSGGGGGIGMRVANGPDELKDAIE 182

Query: 156 QSSSWNHGD----QLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLN 210
            S           ++ IE+Y+ +   +   +MGD+  ++  +   +    S + +Y  L 
Sbjct: 183 SSQKVAGNTFGLAEVYIEKYISNPRHIEIQIMGDSQGNIVYLGERE---CSIQRRYQKL- 238

Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
                   I  ++ K++  +A  A + +   G    +F+F   + + ++LE N 
Sbjct: 239 IEESPSPVITPELRKKMGEVAVKAGKWVNYEGAGTIEFIF--SNGQFYFLEANT 290


>gi|167648404|ref|YP_001686067.1| urea carboxylase [Caulobacter sp. K31]
 gi|167350834|gb|ABZ73569.1| urea carboxylase [Caulobacter sp. K31]
          Length = 1238

 Score = 87.5 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 37/219 (16%), Positives = 76/219 (34%), Gaps = 17/219 (7%)

Query: 58  LHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS---I 111
           +H  +G   E+       E   I +             K  ++ +  + GVP+ P    +
Sbjct: 83  IHPGYGFLSENAGFAEACEAEGIAFIGPTADNIRAFGLKHTARDLAQAHGVPLAPGTDLL 142

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQLL 167
           +     +++   I  P ++K   GG  +G+ V +  +++          ++       + 
Sbjct: 143 VDPAAALEAAQRIGFPVILKATAGGGGIGMRVCETAEAVSEAFAAVQRLANGHFSDGGVF 202

Query: 168 IEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYK 225
           +E+YV     +   + GD +  V  +           L+  +       PA  +P     
Sbjct: 203 LERYVRKARHVEVQMFGDGAGKVVALGE-----RDCSLQRRNQKVVEETPAPGLPAATRA 257

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +   A     A   R     +FL+D      F+LE+N 
Sbjct: 258 ALLDAAVRLASAAHYRSAGTVEFLYDAERDDFFFLEVNT 296


>gi|85703445|ref|ZP_01034549.1| pyruvate carboxylase [Roseovarius sp. 217]
 gi|85672373|gb|EAQ27230.1| pyruvate carboxylase [Roseovarius sp. 217]
          Length = 1146

 Score = 87.5 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 34/221 (15%), Positives = 81/221 (36%), Gaps = 18/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       +   I +            DK  +++V    GVPV P+  V
Sbjct: 80  AIHPGYGLLSENPAFVDACDAAGITFIGPRAETMRALGDKASARRVAIEAGVPVIPATEV 139

Query: 114 NRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-----SSSWNHGD 164
               M +       +  P ++K   GG   G+  I+ +  +   + +      +++ +G+
Sbjct: 140 LGDDMKAIRKQAKEVGYPLMLKASWGGGGRGMRPIENESELEDKVREGRREAEAAFGNGE 199

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
             L +  +    +   ++GD   ++              ++  +       PA  +    
Sbjct: 200 GYLEKMILRARHVEVQILGDKHGNMY-----HLFERDCSVQRRNQKVVERAPAPYLSETQ 254

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +E+ +L +   + +        +FL D  + K +++E+N 
Sbjct: 255 REEICQLGYKICKHVNYECAGTVEFLMDMDTGKFYFIEVNP 295


>gi|126740129|ref|ZP_01755819.1| pyruvate carboxylase [Roseobacter sp. SK209-2-6]
 gi|126718948|gb|EBA15660.1| pyruvate carboxylase [Roseobacter sp. SK209-2-6]
          Length = 1147

 Score = 87.5 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 78/221 (35%), Gaps = 18/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+           I +            DK  +++V  + GVPV P+  V
Sbjct: 80  AIHPGYGLLSENPDFVDACARNGITFIGPKAETMRALGDKASARKVAIAAGVPVIPATEV 139

Query: 114 NRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ----SSSWNHGDQ 165
               MD+       I  P ++K   GG   G+  I+ +  +   +L+    + +     +
Sbjct: 140 LGDDMDAIRKEAAEIGYPLMLKASWGGGGRGMRPIQGESELEEKVLEGRREAEAAFGNGE 199

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
             +E+ +     +   ++GD   ++              ++  +       PA  +  + 
Sbjct: 200 GYLEKMITRARHVEVQILGDKHGEIY-----HLFERDCSVQRRNQKVVERAPAPYLSEEQ 254

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             E+  L     Q +        +FL D    K +++E+N 
Sbjct: 255 RAEICDLGRKICQHVNYECAGTVEFLMDMNDGKFYFIEVNP 295


>gi|15430586|dbj|BAB64420.1| vancomycin resistance protein C-2 [Enterococcus casseliflavus]
 gi|15430588|dbj|BAB64421.1| vancomycin resistance protein C-2 [Enterococcus casseliflavus]
 gi|15430594|dbj|BAB64424.1| vancomycin resistance protein C-2 [Enterococcus casseliflavus]
 gi|15430604|dbj|BAB64429.1| vancomycin resistance protein C-2 [Enterococcus casseliflavus]
          Length = 115

 Score = 87.5 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/109 (26%), Positives = 55/109 (50%), Gaps = 4/109 (3%)

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
             P   KP + GSS GI  +   + I   L ++ +  +   +L+++ + G+E+ CG++G+
Sbjct: 7   GFPVFFKPNEAGSSKGITKVTCVEEIAPALKEAFA--YCSAVLLQKNIAGVEIGCGILGN 64

Query: 185 ASLDVTEIAVPK--SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
            SL V           F+ +E KY  +++   +PA +P  I  +V+  A
Sbjct: 65  DSLTVGACDAISLVDGFFDFEEKYQLISAKITVPAPLPETIETKVKEQA 113


>gi|289643562|ref|ZP_06475678.1| Carbamoyl-phosphate synthase L chain ATP-binding [Frankia symbiont
           of Datisca glomerata]
 gi|289506628|gb|EFD27611.1| Carbamoyl-phosphate synthase L chain ATP-binding [Frankia symbiont
           of Datisca glomerata]
          Length = 455

 Score = 87.5 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 76/222 (34%), Gaps = 23/222 (10%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP------- 106
            +H  +G   ED     I     + +  S     A   DK  ++ ++   G+P       
Sbjct: 77  AVHPGYGFLSEDPDFAEICADAGLVFIGSPPAVMASLGDKSVARALMRRAGLPLLTGSAD 136

Query: 107 VCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH---- 162
           V  S+       D    I  P +IK   GG   G+ V++    +      + +       
Sbjct: 137 VARSVA---DARDIADAIGYPVIIKAAAGGGGRGMTVVRSAAQLATAFADTRAAARAVFG 193

Query: 163 GDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL 221
            D++ +E++++    +   ++ D       +            K            ++  
Sbjct: 194 DDRIYVERFLERARHVEVQILCDGHGAGIHLGTRDCSVQRRHQK----LVEEAPAPELDP 249

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
           D   E+ R A     ++G  G+   +FL D      +++EIN
Sbjct: 250 DRVAEMCRDAVRGALSVGFTGLGTVEFLVDEDQNH-YFIEIN 290


>gi|254461461|ref|ZP_05074877.1| pyruvate carboxylase [Rhodobacterales bacterium HTCC2083]
 gi|206678050|gb|EDZ42537.1| pyruvate carboxylase [Rhodobacteraceae bacterium HTCC2083]
          Length = 1147

 Score = 87.5 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 79/221 (35%), Gaps = 18/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       +   I +            DK  +++V    GVPV P+  V
Sbjct: 80  AIHPGYGLLSENPDFVDACDANGITFIGPKAATMRALGDKASARRVAMDAGVPVVPATEV 139

Query: 114 NRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-----SSSWNHGD 164
               MD+       +  P ++K   GG   G+  I  +  +   +L+      +++ + +
Sbjct: 140 LGNDMDAVKREAGEVGYPLMLKASWGGGGRGMRPIYSEDEVEEKVLEGRREAEAAFGNDE 199

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
             L +  V    +   ++GD     ++  +         ++  +       PA  +  + 
Sbjct: 200 GYLEKMIVRARHVEVQILGD-----SQGGMYHLFERDCSVQRRNQKVVERAPAPYLSEEQ 254

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             E+  L       +        +FL D  S K +++E+N 
Sbjct: 255 RTEICDLGRKICAHVNYECAGTVEFLMDMDSGKFYFIEVNP 295


>gi|297160329|gb|ADI10041.1| acetyl/propionyl CoA carboxylase alpha subunit [Streptomyces
           bingchenggensis BCW-1]
          Length = 732

 Score = 87.5 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 84/221 (38%), Gaps = 17/221 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---- 109
            +H  +G   E+           + +      A  L  DK+R+K+ V + GVPV P    
Sbjct: 91  AVHPGYGFLAENAAFARACTGAGLTFIGPPAAAIELMGDKIRAKESVRAAGVPVVPGSTG 150

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
           S L +    ++   I  P ++KP  GG   G+ +++ +  +  ++  +          D 
Sbjct: 151 SALTDADLAEAAREIGMPVLLKPSAGGGGKGMRLVRDEARLADEIAAARREARGAFGDDT 210

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           LL+E+++DG   +   V+ D    V  +   +        K             +  D  
Sbjct: 211 LLVERWIDGPRHIEIQVLADGYGHVIHLGERECSLQRRHQKII----EEAPSPLLDPDTR 266

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF-WLEINV 264
             +   A  A ++ G  G    +F+    +   + ++E+N 
Sbjct: 267 ALMGEAAVQAARSCGYVGAGTVEFIVPGAAPAAYCFMEMNT 307


>gi|315503369|ref|YP_004082256.1| carbamoyl-phosphate synthase l chain ATP-binding protein
           [Micromonospora sp. L5]
 gi|315409988|gb|ADU08105.1| Carbamoyl-phosphate synthase L chain ATP-binding protein
           [Micromonospora sp. L5]
          Length = 671

 Score = 87.5 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 45/216 (20%), Positives = 83/216 (38%), Gaps = 20/216 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+    A +    + +      A A   DKM +K +++  GVP+ P+   
Sbjct: 77  AVHPGYGFLAENAEFAAAVTDAGLTWVGPSAKAIAAMGDKMAAKAMLADAGVPMLPTWT- 135

Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQLLIE 169
                D   + + P ++K   GG   G+ +++    +   +  +            + IE
Sbjct: 136 -----DPAEVTAFPVLVKAAAGGGGRGMRIVRDAAGLAEAVAGARREAAAAFGDGTVFIE 190

Query: 170 QYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           +YV+ G  +   + GD    V  + V          K          P  +P D+  E+ 
Sbjct: 191 RYVERGRHVEVQIFGDTHGTVVALGVRDCSIQRRHQK-----IVEEAPGVLPDDVRAELH 245

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             A  A +A+   G    +FL  P   +V +LE+N 
Sbjct: 246 EAAVAAGRAVDYVGAGTVEFLLAP-DGQVHFLEMNT 280


>gi|294629482|ref|ZP_06708042.1| acetyl/propionyl-CoA carboxylase, alpha subunit [Streptomyces sp.
           e14]
 gi|292832815|gb|EFF91164.1| acetyl/propionyl-CoA carboxylase, alpha subunit [Streptomyces sp.
           e14]
          Length = 654

 Score = 87.5 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 84/221 (38%), Gaps = 17/221 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---- 109
            +H  +G   E+       E   + +      A +L  DK+R+K+ V + GVPV P    
Sbjct: 77  AVHPGYGFLAENAGFARACEEAGLVFIGPPADAISLMGDKIRAKETVRAAGVPVVPGSSG 136

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
           S L +    ++   I  P ++KP  GG   G+ ++++   +  ++  +          D 
Sbjct: 137 SGLSDDQLAEAAREIGMPVLLKPSAGGGGKGMRLVREADRLAEEIAAARREARASFGDDT 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           LL+E++VD    +   V+ D    V  +   +        K             +     
Sbjct: 197 LLVERWVDTPRHIEIQVLADGHGRVIHLGERECSLQRRHQKII----EEAPSVLLDEATR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLS-RKVFWLEINV 264
             +   A  A ++ G RG    +F+         +++E+N 
Sbjct: 253 AAMGEAAVQAARSCGYRGAGTVEFIVPGGDPSSYYFMEMNT 293


>gi|114777974|ref|ZP_01452888.1| Allophanate hydrolase subunit 2 [Mariprofundus ferrooxydans PV-1]
 gi|114551761|gb|EAU54313.1| Allophanate hydrolase subunit 2 [Mariprofundus ferrooxydans PV-1]
          Length = 1199

 Score = 87.5 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 42/256 (16%), Positives = 85/256 (33%), Gaps = 30/256 (11%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+       E   I +        +    K  ++Q+     VP+ P    
Sbjct: 77  AIHPGYGFLSENVAFAEACEKNGIRFVGPTPEQLSCFGLKHTARQIAKEQQVPLLPGTEL 136

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQL 166
           +L     + +   I  P ++K   GG  +G+ +  K + +                 D +
Sbjct: 137 LLDLDEAVAAAESIGYPVMLKSTAGGGGIGMQLCWKAEDLVSAFESVKRLGRSNFSNDGV 196

Query: 167 LIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
            +E+Y++    +   + GD    VT +            K             I   +  
Sbjct: 197 FLEKYIEHARHIEVQIFGDGKGFVTALGERDCSTQRRNQKVL----EESPAPNISDAVRA 252

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285
            +   A    +A+  R     +F++DP S   ++LE+N             +    G + 
Sbjct: 253 AMMDTAVRLGEAVEYRSAGTVEFIYDPNSESFYFLEVNT-----------RLQVEHGVTE 301

Query: 286 R----ELLLWMVEDAS 297
                +L+ WM+  A+
Sbjct: 302 EVTGVDLVEWMIRLAA 317


>gi|149203602|ref|ZP_01880571.1| acetyl-CoA carboxylase [Roseovarius sp. TM1035]
 gi|149142719|gb|EDM30761.1| acetyl-CoA carboxylase [Roseovarius sp. TM1035]
          Length = 449

 Score = 87.5 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 76/220 (34%), Gaps = 18/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---- 109
            +H  +G   E+     I+E   + +         +  DK+ +K  + + GVP  P    
Sbjct: 77  AIHPGYGFLSENANFVQIVEDHGLTFIGPSAEHIRIMGDKITAKDTMKALGVPCVPGSEG 136

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
            +   +        I  P ++K   GG   G+ V +    +    L    ++ +    D+
Sbjct: 137 GVANLKQAQALCAEIGFPVIVKATAGGGGRGMKVAQSAAELEKAFLTARSEAKAAFGNDE 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+Y+     +   V GD       +            K             I  +  
Sbjct: 197 VYIEKYLTTPRHIEIQVFGDGKGGAVHLGERDCSLQRRHQKVL----EEAPGPCITAEER 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             + ++   A   I  RG    +FL++    + F++E+N 
Sbjct: 253 ARIGKICADACANIQYRGAGTIEFLYEK--GEFFFIEMNT 290


>gi|302870354|ref|YP_003838991.1| carbamoyl-phosphate synthase subunit L [Micromonospora aurantiaca
           ATCC 27029]
 gi|302573213|gb|ADL49415.1| Carbamoyl-phosphate synthase L chain ATP-binding [Micromonospora
           aurantiaca ATCC 27029]
          Length = 671

 Score = 87.5 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 45/216 (20%), Positives = 83/216 (38%), Gaps = 20/216 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+    A +    + +      A A   DKM +K +++  GVP+ P+   
Sbjct: 77  AVHPGYGFLAENAEFAAAVTDAGLTWVGPSAKAIAAMGDKMAAKAMLADAGVPMLPTWT- 135

Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQLLIE 169
                D   + + P ++K   GG   G+ +++    +   +  +            + IE
Sbjct: 136 -----DPAEVTAFPVLVKAAAGGGGRGMRIVRDAAGLAEAVAGARREAAAAFGDGTVFIE 190

Query: 170 QYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           +YV+ G  +   + GD    V  + V          K          P  +P D+  E+ 
Sbjct: 191 RYVERGRHVEVQIFGDTHGTVVALGVRDCSIQRRHQK-----IVEEAPGVLPDDVRAELH 245

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             A  A +A+   G    +FL  P   +V +LE+N 
Sbjct: 246 EAAVAAGRAVDYVGAGTVEFLLAP-DGQVHFLEMNT 280


>gi|37521581|ref|NP_924958.1| acetyl-CoA carboxylase biotin carboxylase subunit [Gloeobacter
           violaceus PCC 7421]
 gi|35212579|dbj|BAC89953.1| biotin carboxylase [Gloeobacter violaceus PCC 7421]
          Length = 449

 Score = 87.5 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 76/220 (34%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     I     + +      A  L  DK  ++  + + GVP  P    
Sbjct: 79  AVHPGYGFLSENERFAEICADHGLTFIGPSPRAMVLMGDKSTARDTMKAAGVPTVPGSEG 138

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGDQ 165
            I   +   ++   I  P +IK   GG   G+ +   ++ +         ++ +      
Sbjct: 139 LIDSEQEAYEAAKAIGYPVMIKATAGGGGRGMRIAGNERDLIKMVQTAQREAEAAFGNRG 198

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+Y++    +   ++ D   +V  +            K             +   + 
Sbjct: 199 VYIEKYLEEPRHIEFQILADQHGNVVHLGERDCSIQRRHQKLL----EESPSPFLTPAMR 254

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +   A  A ++I   G    +FL D      +++E+N 
Sbjct: 255 ERMGEAALQAARSINYVGAGTIEFLVDKK-GDFYFMEMNT 293


>gi|147781717|emb|CAN69740.1| hypothetical protein VITISV_017584 [Vitis vinifera]
          Length = 1204

 Score = 87.5 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 56/280 (20%), Positives = 103/280 (36%), Gaps = 38/280 (13%)

Query: 18  SGKACASALEDAGFKVSQI---------DVDRS------------VGLVLAHLKPDLAFN 56
           SG     AL++ G++V  I         D D +            V  VL   +PD    
Sbjct: 110 SGTQACKALKEEGYEVVLINSNPATIMTDPDMADKTYITPMTPXLVEQVLEKERPDAILP 169

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G    +  V      +LE   +    + + A   + D+   KQ + + GV   PS  
Sbjct: 170 TMGGQTALNLAVALAESGVLEKYGVELIGAKLEAIKKAEDRELFKQAMENIGVKTPPSGI 229

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
              ++     +  +   P +I+P       G  +    +          + +   Q+L+E
Sbjct: 230 GTTLDECMEIANSIGEFPLIIRPAFTLGGTGGGIAYNREEFEAICKSGLAASLTSQVLVE 289

Query: 170 QYVDG-IELTCGVMGDASLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPAK-IPLDIYKE 226
           + + G  E    VM D + +V  I   ++ D           +S  V PA+ +    Y+ 
Sbjct: 290 KSLLGWKEYELEVMRDLADNVVIICSIENIDPMGVHT----GDSITVAPAQTLTDKEYQR 345

Query: 227 VQRLAFLAHQAIG--CRGISRSDFLFDPLSRKVFWLEINV 264
           ++  +    + IG  C G S   F  +P+  +V  +E+N 
Sbjct: 346 LRDYSVAIIREIGVECGG-SNVQFAVNPVDGEVMVIEMNP 384



 Score = 45.1 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 46/279 (16%), Positives = 98/279 (35%), Gaps = 46/279 (16%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLV------- 68
           AL+ AG++   +         D D S  L    L  +   N++      DG++       
Sbjct: 686 ALQKAGYETIMMNSNPETVSTDYDTSDRLYFEPLTVEDVLNIID-LEXPDGIIVQFGGQT 744

Query: 69  --------QAILELLEIPYTHSGILASAL----------SMDKMRSKQVVSSCGVPVCPS 110
                   Q  L+    P + SG+    +          + ++ R   +++   +     
Sbjct: 745 PLKLALPIQNYLDE-HRPLSASGVGHVRIWGTSPDSIDAAENRERFNAILNDLKIEQPKG 803

Query: 111 ILVNRFTMDSQHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL 167
             + +   D+  +   I  P V++P        + ++  D  +   L  +   +    +L
Sbjct: 804 -GIAKSEADALAIAMDIGYPVVVRPSYVLGGRAMEIVYSDDKLVTYLENAVEVDPERPVL 862

Query: 168 IEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYK 225
           I++Y+ D IE+    + D+  +V    + +   +  +    S +S   LP K IP     
Sbjct: 863 IDRYLSDAIEIDVDALADSEGNVVIGGIME---HIEQAGVHSGDSACSLPTKTIPSSCLD 919

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            ++    +  + +   G+    +        VF LE N 
Sbjct: 920 TIRSWTTILAKKLNVCGLMNCQYAITAS-GSVFLLEANP 957


>gi|138895110|ref|YP_001125563.1| acetyl-CoA carboxylase biotin carboxylase subunit [Geobacillus
           thermodenitrificans NG80-2]
 gi|196248308|ref|ZP_03147009.1| Carbamoyl-phosphate synthase L chain ATP-binding [Geobacillus sp.
           G11MC16]
 gi|134266623|gb|ABO66818.1| Acetyl-CoA carboxylase [Geobacillus thermodenitrificans NG80-2]
 gi|196212033|gb|EDY06791.1| Carbamoyl-phosphate synthase L chain ATP-binding [Geobacillus sp.
           G11MC16]
          Length = 450

 Score = 87.5 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 35/219 (15%), Positives = 77/219 (35%), Gaps = 17/219 (7%)

Query: 58  LHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
           +H  +G   E+       E   I +        A    K+ ++Q +   GVP+ P +   
Sbjct: 78  IHPGYGLLSENPAFARRCEEEGIVFIGPKADVIAAMGSKIEARQTMEKAGVPIVPGVSFA 137

Query: 115 RFTMDSQHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQL 166
             + D        I  P ++K   GG  +G+ +   +  +         +++S+     +
Sbjct: 138 LDSPDEAAAAAASIGYPVMLKASSGGGGIGMHIAHDEAELRQAFEGSQKRAASFFGDGTM 197

Query: 167 LIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
            IE+Y++    +   ++ D   +   +   +        K             +  +  +
Sbjct: 198 YIEKYIERPRHIEIQLLADGHGNCVYLWERECSIQRRHQK----VVEEAPSPFLDEETRR 253

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           ++   A  A + IG       +FL D      ++LE+N 
Sbjct: 254 KMGEAAVQAARYIGYANAGTIEFLVDEQKN-FYFLEMNT 291


>gi|119386849|ref|YP_917904.1| pyruvate carboxylase [Paracoccus denitrificans PD1222]
 gi|119377444|gb|ABL72208.1| pyruvate carboxylase [Paracoccus denitrificans PD1222]
          Length = 1144

 Score = 87.5 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 81/221 (36%), Gaps = 18/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+           I +            DK  +++V    GVPV P+  V
Sbjct: 78  AIHPGYGLLSENPDFVDACTAAGIAFIGPSADTMRALGDKASARRVAIQAGVPVIPATEV 137

Query: 114 NRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-----SSSWNHGD 164
               M++       I  P ++K   GG   G+  I   + +P  + +      +++ +G+
Sbjct: 138 LGEDMEAIKREAAEIGYPLMLKASWGGGGRGMRPIMGPEELPEKVREGRREAEAAFGNGE 197

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
             L +  +    +   ++GD    +  +            K          PA  +  + 
Sbjct: 198 GYLEKMILRARHVEVQLLGDGHGGLYHLYERDCTVQRRNQK-----VVERAPAPYLTPEQ 252

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             EV  LA    +A+G R     +FL D  S+  +++E+N 
Sbjct: 253 RAEVCELALRIGRAVGYRNAGTVEFLMDMDSQAFYFIEVNP 293


>gi|145220406|ref|YP_001131115.1| acetyl-CoA carboxylase, biotin carboxylase [Prosthecochloris
           vibrioformis DSM 265]
 gi|145206570|gb|ABP37613.1| acetyl-CoA carboxylase, biotin carboxylase [Chlorobium
           phaeovibrioides DSM 265]
          Length = 446

 Score = 87.5 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 76/220 (34%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     +     I +            DK  +K  + + GVPV P    
Sbjct: 77  AIHPGYGFLAENAEFADVCASANIKFIGPTAEMINRMGDKNTAKSTMIAAGVPVVPGSPG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGDQ 165
            +   +  +++      P +IKP  GG   G+ V+ ++  I   L     ++        
Sbjct: 137 LVTDLKEAVETAKKTGYPVIIKPTAGGGGKGMRVVHEESQIEKALNTARSEAEQAFGNSG 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE++++    +   +M D   +   +            K             +   + 
Sbjct: 197 VYIEKFLENPRHVEIQIMSDQHGNTIHLGERDCTVQRRHQK----LIEETPSPAVNDALR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K++   A  A  AI   G    +FL D      +++E+N 
Sbjct: 253 KKMGDAAVAAASAINYEGAGTIEFLLDRHQN-FYFMEMNT 291


>gi|15613695|ref|NP_241998.1| acetyl-CoA carboxylase biotin carboxylase subunit [Bacillus
           halodurans C-125]
 gi|42558882|sp|Q9KDS9|ACCC_BACHD RecName: Full=Biotin carboxylase; AltName: Full=Acetyl-CoA
           carboxylase subunit A; Short=ACC
 gi|10173748|dbj|BAB04851.1| biotin carboxylase [Bacillus halodurans C-125]
          Length = 452

 Score = 87.5 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 77/220 (35%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+           I +             K+ ++  + + GVPV P   V
Sbjct: 77  AIHPGYGLLSENARFARACVEAGISFIGPSPEVIERMGSKIAARTAMQTAGVPVIPGSDV 136

Query: 114 NRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
                +           P ++K   GG  +G+ +++ D+ +         +++S+     
Sbjct: 137 ALADEEEAVHLARKFGYPVMLKASAGGGGIGMQLVRNDEEMRKAFAGNQKRATSFFGDGT 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+ V+    +   +  D    V  +            K             +   + 
Sbjct: 197 MFLEKAVENPRHIEVQIAADHHGHVVHLWERDCSIQRRHQK----VVEEAPSPFVDEALR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +++ +LA  A +AI  R +   + L D     +++LE+N 
Sbjct: 253 EKIGQLAVKAAKAIDYRNLGTVECLVDGEKN-IYFLEMNT 291


>gi|270307572|ref|YP_003329630.1| hypothetical protein DhcVS_129 [Dehalococcoides sp. VS]
 gi|270153464|gb|ACZ61302.1| hypothetical protein DhcVS_129 [Dehalococcoides sp. VS]
          Length = 498

 Score = 87.5 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 44/234 (18%), Positives = 88/234 (37%), Gaps = 16/234 (6%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
           + +  V      D      +G   E+      LE   I +         L  +K+ +++ 
Sbjct: 64  KKIVSVAKKAGVDGVHPG-YGFLSENPGFALALEKAGIKFVGPSSRVIELMGNKIAARRE 122

Query: 100 VSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
           +   GVPV P     +       ++   I  P +IKP  GG  +G+ V      +   + 
Sbjct: 123 MKKAGVPVLPGTEGCVSGIEQATEAAAAIGYPVIIKPSGGGGGIGMRVANGPDELKDAIE 182

Query: 156 QSSSWNHGD----QLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLN 210
            S           ++ IE+Y+     +   +MGD+  +V  +   +    S + +Y  L 
Sbjct: 183 SSQKVAGNTFGLAEVYIEKYISKPRHIEIQIMGDSQGNVVYLGERE---CSIQRRYQKL- 238

Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
                   I  ++ K++  +A  A + +   G    +F+F   + + ++LE N 
Sbjct: 239 IEEAPSPVITPELRKKMGEVAIKAGKWVNYEGAGTIEFIF--SNGQFYFLEANT 290


>gi|114767027|ref|ZP_01445935.1| acetyl-CoA carboxylase [Pelagibaca bermudensis HTCC2601]
 gi|114540811|gb|EAU43875.1| acetyl-CoA carboxylase [Roseovarius sp. HTCC2601]
          Length = 451

 Score = 87.5 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 33/220 (15%), Positives = 69/220 (31%), Gaps = 18/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---- 109
            +H  +G   E+     ++E   + +         +  DK+ +K  +   GVP  P    
Sbjct: 77  AIHPGYGFMSENARFVQMVEDHGLTFIGPSAQHIRVMGDKITAKDTMKELGVPCVPGSEG 136

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
            +               P +IK   GG   G+ V   +  +      + +        D+
Sbjct: 137 GVPDVEAAKQIGRDFGYPVIIKATAGGGGRGMKVANSEAEMERAFQTARAEGKAAFGNDE 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+Y+     +   V GD   +   +            K             I  +  
Sbjct: 197 VYIEKYLQRPRHIEIQVFGDGKGNAVHLGERDCSLQRRHQKVF----EEAPGPCITEEER 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +  +   A   +   G    +FL+     + +++E+N 
Sbjct: 253 ARIGAVCAKAVGDLKYSGAGTIEFLY--EDGEFYFIEMNT 290


>gi|83414163|dbj|BAE53872.1| D-alanine:D-alanine ligase [Streptococcus cristatus]
          Length = 96

 Score = 87.5 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 27/96 (28%), Positives = 50/96 (52%), Gaps = 2/96 (2%)

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNST 212
               ++ +  ++L+EQ V+  E+  G++G+  +  T     V    FY YE KY     T
Sbjct: 1   ALDFAFKYDSRVLVEQGVNAREIEVGLLGNYDVRSTLPGEVVKDVAFYDYEAKYIDNKIT 60

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
             +P KI  ++   ++  A +A +A+G +G++R DF
Sbjct: 61  MDIPVKISGEVISIMRTNAEIAFRALGGQGLARCDF 96


>gi|121610715|ref|YP_998522.1| urea amidolyase-like protein [Verminephrobacter eiseniae EF01-2]
 gi|121555355|gb|ABM59504.1| urea amidolyase related protein [Verminephrobacter eiseniae EF01-2]
          Length = 1228

 Score = 87.5 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 32/220 (14%), Positives = 76/220 (34%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E        E   + +             K +++ +  + GVP+ P   +
Sbjct: 82  AIHPGYGFLSESPDFAEACEAAGLVFIGPTPAQMRAFGFKHQARALAQAHGVPLLPGTGL 141

Query: 114 NRFTMDS---QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQL 166
                ++      I  P ++K   GG  +G+ +++    +          + +  +   L
Sbjct: 142 LADLAEAVAQARRIGYPVMLKSSAGGGGIGMRLVRDAGELAAAFEAVAHLARAHFNDAGL 201

Query: 167 LIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIY 224
            +E++V+    +   + GD    V  +            +  +       PA  +     
Sbjct: 202 FLEKFVEPARHIEVQLFGDGQGRVVALGE-----RDCSAQRRNQKVIEETPAPHLAAGTR 256

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +   A    +A+  R     +F+ D  S++ ++LE+N 
Sbjct: 257 AALIDAALRLGRAVNYRSAGTVEFVLDAASQQFYFLEVNT 296


>gi|149926060|ref|ZP_01914323.1| Carbamoyl-phosphate synthase L chain, ATP-binding protein
           [Limnobacter sp. MED105]
 gi|149825348|gb|EDM84559.1| Carbamoyl-phosphate synthase L chain, ATP-binding protein
           [Limnobacter sp. MED105]
          Length = 662

 Score = 87.5 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 79/221 (35%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E            I        A A   DK  +K++    G+P  P    
Sbjct: 79  AIHPGYGFVSESPAFAQACAQAGITLVGPTPQAIADMADKACAKEIAQQAGLPCIPGFSE 138

Query: 114 NRFT----MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP-----LDLLQSSSWNHGD 164
              +    M +   I  P +IK L GG   G+ ++  +           L   +++N  D
Sbjct: 139 PNASVSDLMAAAQRIGYPVMIKALAGGGGRGMRLVMNESEFASQLHSAQLEAKNAFN-DD 197

Query: 165 QLLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           ++++E+  ++   +   V+ D       +        S + ++  +      PA +  ++
Sbjct: 198 RVMLEKAIINPRHIEIQVLADTHGHAVHLGERD---CSVQRRHQKIVEEAPSPA-VSAEL 253

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              +   A    +A    G    +FL D  +   +++E+N 
Sbjct: 254 RARMGEAALKLVRATSYVGAGTVEFLLDA-NGDFYFIEMNT 293


>gi|315185819|gb|EFU19585.1| protein of unknown function DUF201 [Spirochaeta thermophila DSM
           6578]
          Length = 536

 Score = 87.5 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 41/216 (18%), Positives = 92/216 (42%), Gaps = 20/216 (9%)

Query: 58  LHGNF--GED--GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
           LHG F  G D    V  + E + +P        +  + DK   ++ +   G+PV    ++
Sbjct: 72  LHGVFTAGTDFSTSVAYVAERMGLP--GIPYEVALRAKDKALMREHLHRAGIPVPRYAVL 129

Query: 114 NRFT-----MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168
           +R       ++    I  P V+KP     + G+ +++    +   +  +++ +   ++++
Sbjct: 130 SREERANRLLEEGRRIPFPLVVKPADNMGARGVRLVRDTPELEEAVESAAACSLSGKVVL 189

Query: 169 EQYVDGIELTC-GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227
           E++++G E +   V+    + +  +A     F  Y ++       H +P  IP  +  E+
Sbjct: 190 EEFLEGPEFSIDAVVWQGEVHICGVADRHIFFPPYFVEMG-----HTMPTDIPPSVRAEL 244

Query: 228 QRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEI 262
           + +   A +A+G   G ++ D  +    R     EI
Sbjct: 245 EEVFVRAVKALGITEGAAKGDVFYT--GRGPVIGEI 278


>gi|259416455|ref|ZP_05740375.1| pyruvate carboxylase [Silicibacter sp. TrichCH4B]
 gi|259347894|gb|EEW59671.1| pyruvate carboxylase [Silicibacter sp. TrichCH4B]
          Length = 1146

 Score = 87.1 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 76/221 (34%), Gaps = 18/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+           I +            DK  +++V    GVPV P+  V
Sbjct: 80  AIHPGYGLLSENPDFVDACARNGITFIGPKAETMRALGDKASARRVAVEAGVPVIPATEV 139

Query: 114 NRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ----SSSWNHGDQ 165
               MD+       +  P ++K   GG   G+  I  +  +   +L+    + +     +
Sbjct: 140 LGDDMDAIRKEAAEVGYPLMLKASWGGGGRGMRPIHSEDELEEKVLEGRREAEAAFGNGE 199

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
             +E+ +     +   ++GD   ++              ++  +       PA  +    
Sbjct: 200 GYLEKMITRARHVEVQILGDKHGEIY-----HLFERDCSVQRRNQKVVERAPAPYLTDAQ 254

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +E+  L     Q +        +FL D  +   +++E+N 
Sbjct: 255 REEICDLGRKICQHVNYECAGTVEFLMDMETGNFYFIEVNP 295


>gi|148642825|ref|YP_001273338.1| pyruvate carboxylase subunit A [Methanobrevibacter smithii ATCC
           35061]
 gi|148551842|gb|ABQ86970.1| pyruvate carboxylase (acetyl-CoA/biotin carboxylase), subunit A,
           PycA [Methanobrevibacter smithii ATCC 35061]
          Length = 497

 Score = 87.1 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 41/236 (17%), Positives = 84/236 (35%), Gaps = 21/236 (8%)

Query: 38  VDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSK 97
           +D ++      + P   F   +  FGE        E   I              DK+ SK
Sbjct: 67  IDIALESGSDAIHPGYGFLAENPKFGE------ACEKNGIKLIGPTGDVIHQMGDKITSK 120

Query: 98  QVVSSCGVPV----CPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153
            ++   GVPV       +       +    I  P ++K   GG  +G+  + ++  +   
Sbjct: 121 ALMKKAGVPVIEGTPEGVSDIEEAKEIARQIGYPVIVKASAGGGGIGMRAVYEEDELVRA 180

Query: 154 LL----QSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS 208
           +      +S+      + IE+Y++    +   ++ D   +V  +A  +        K   
Sbjct: 181 IESTQSVASTNFGDSTVFIEKYLEKPRHIEFQLLADEHGNVIHVADRECSIQRRHQKLL- 239

Query: 209 LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
                     +  ++  E+   A  A + IG       +FL+D  + + ++LE+N 
Sbjct: 240 ---EEAPSPIMTEELRAEMGASAVKAAEYIGYTSAGTVEFLYD--NGQYYFLEMNT 290


>gi|85707168|ref|ZP_01038255.1| acetyl-CoA carboxylase [Roseovarius sp. 217]
 gi|85668327|gb|EAQ23201.1| acetyl-CoA carboxylase [Roseovarius sp. 217]
          Length = 449

 Score = 87.1 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 75/220 (34%), Gaps = 18/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---- 109
            +H  +G   E+     I+E   + +         +  DK+ +K  + + GVP  P    
Sbjct: 77  AIHPGYGFLSENANFVQIVEDHGLTFIGPSAEHIRIMGDKITAKDTMKALGVPCVPGSEG 136

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
            I   +        I  P ++K   GG   G+ V +    +    L    ++ +    D+
Sbjct: 137 GIATLKQAQALCADIGFPIIVKATAGGGGRGMKVAQNAAELEKAFLTARSEAKAAFGNDE 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+Y+     +   V GD       +            K             I  +  
Sbjct: 197 VYIEKYLTTPRHIEIQVFGDGKGRAVHLGERDCSLQRRHQKVL----EEAPGPCITAEER 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             + ++   A   I  RG    +FL++      F++E+N 
Sbjct: 253 ARIGKICADACANIQYRGAGTIEFLYEK--GDFFFIEMNT 290


>gi|91976682|ref|YP_569341.1| carbamoyl-phosphate synthase L chain, ATP-binding [Rhodopseudomonas
           palustris BisB5]
 gi|91683138|gb|ABE39440.1| Carbamoyl-phosphate synthase L chain, ATP-binding [Rhodopseudomonas
           palustris BisB5]
          Length = 658

 Score = 87.1 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 80/220 (36%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+    A      + +      + A   +K  +K+++   GVP  P    
Sbjct: 82  AVHPGYGFLAENEDFAAACRDAGLVFIGPSAESIASMGNKAGAKEIMIKAGVPCVPGYQG 141

Query: 112 --LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
               +   +     I  P +IK + GG   G+ ++K   ++P  L  + S          
Sbjct: 142 ADQSDAAMIAEAGKIGFPVMIKAVAGGGGRGMRLVKDAAALPDALRSARSEAQSAFGDPT 201

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           +++E+ + D   +   V GD       +            K             +   + 
Sbjct: 202 VILERAIVDPRHIEIQVFGDRYGHAIHLGERDCSVQRRHQK----LIEEAPSPAVSEALR 257

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +++  +A  A +AIG  G    +FL D    + +++E+N 
Sbjct: 258 EQMGVVAVNAVKAIGYEGAGTLEFLLDAQ-GQFYFMEMNT 296


>gi|70726390|ref|YP_253304.1| acetyl-CoA carboxylase biotin carboxylase subunit [Staphylococcus
           haemolyticus JCSC1435]
 gi|68447114|dbj|BAE04698.1| acetyl-CoA carboxylase [Staphylococcus haemolyticus JCSC1435]
          Length = 451

 Score = 87.1 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 33/216 (15%), Positives = 77/216 (35%), Gaps = 15/216 (6%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVN 114
           +G   E+G    + E  ++ +      +      K  +K  + +  VPV P     +   
Sbjct: 81  YGFLAENGDFAELCEACQLKFIGPSYESIQKMGIKDIAKAEMIAANVPVVPGSDGLVTTI 140

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGDQLLIE 169
                    I  P +IK   GG   GI V + ++ +            +++ +G   L E
Sbjct: 141 SDAKQIAKEIGYPVIIKATAGGGGKGIRVARTEKELENGYRMTQQEAETAFGNGGLYL-E 199

Query: 170 QYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           ++++    +   ++GD   +V  +            +             +  +  +E+ 
Sbjct: 200 KFIENFRHIEIQIIGDQHGNVIHLGERDCTI----QRRMQKLVEESPSPILSDEQREEMG 255

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             A  A +A+        +F++D    + +++E+N 
Sbjct: 256 NAAIRAAKAVNYENAGTIEFIYDLNDNQFYFMEMNT 291


>gi|15430592|dbj|BAB64423.1| vancomycin resistance protein C-2 [Enterococcus casseliflavus]
          Length = 115

 Score = 87.1 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 29/109 (26%), Positives = 55/109 (50%), Gaps = 4/109 (3%)

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
             P   KP + GSS GI  +   + I   L ++ +  +   +L+++ + G+E+ CG++G+
Sbjct: 7   GFPVFFKPNEAGSSKGITKVTCVEEIAPALKEAFA--YCSAVLLQKNIAGVEIGCGILGN 64

Query: 185 ASLDVTEIAVPK--SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
            SL V           F+ +E KY  +++   +PA +P  I  +V+  A
Sbjct: 65  DSLTVGACDAISLVEGFFDFEEKYQLISAKITVPAPLPETIETKVKEQA 113


>gi|89901587|ref|YP_524058.1| carbamoyl-phosphate synthase L chain, ATP-binding [Rhodoferax
           ferrireducens T118]
 gi|89346324|gb|ABD70527.1| Carbamoyl-phosphate synthase L chain, ATP-binding [Rhodoferax
           ferrireducens T118]
          Length = 654

 Score = 87.1 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 82/221 (37%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---ED-GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            +H  +G   E+ G  QA L+   + +      A     DK  +K+ + + GVP  P  L
Sbjct: 78  AIHPGYGFLSENAGFAQACLD-AGLVFIGPPPSAIEAMGDKALAKRRMIAAGVPCAPGYL 136

Query: 113 VNRFTM----DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GD 164
                     +    +  P ++K + GG   G+ ++++   I   ++ +           
Sbjct: 137 GEEQDDARLTEEALKLGFPLLVKAVAGGGGRGMRLVREAGEIKQAIVAARREAQSAFGDG 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            L++E+ +D G  +   V  DA      +            K             +   +
Sbjct: 197 TLMLERLIDNGRHIEIQVFADAHGHAVYLGERDCTAQRRRQK----VIEEAPSPVVNAAL 252

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + + + A  A  A+G RG    +F+ D    K ++LE+N 
Sbjct: 253 RESMGKDAVAAALAVGYRGAGTVEFIVDA-DLKHYFLEMNT 292


>gi|90420297|ref|ZP_01228205.1| pyruvate carboxylase [Aurantimonas manganoxydans SI85-9A1]
 gi|90335631|gb|EAS49381.1| pyruvate carboxylase [Aurantimonas manganoxydans SI85-9A1]
          Length = 1154

 Score = 87.1 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 34/200 (17%), Positives = 75/200 (37%), Gaps = 15/200 (7%)

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVI 130
             I +            +K+ ++ +    GVPV P+ +     MD        +  P ++
Sbjct: 106 AGITFIGPSADTMRRLGNKVAARNLALEVGVPVVPATVPLPDDMDEVRRMAAEVGYPVML 165

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQ----SSSWNHGDQLLIEQYVD-GIELTCGVMGDA 185
           K   GG   G+  I+ ++ +  ++++    + +    D++ +E+ ++    +   ++GD 
Sbjct: 166 KASWGGGGRGMRAIRDEKDLEREVVEGKREARAAFGKDEVYLEKLIERARHVEVQILGDT 225

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGIS 244
             +V ++            K          PA  +      E+   A     A    G  
Sbjct: 226 HGNVVDLFERDCSIQRRNQK-----VVERAPAPYLDDAQRAEIAGYARKLADATAYVGAG 280

Query: 245 RSDFLFDPLSRKVFWLEINV 264
             +FL D  S K +++E+N 
Sbjct: 281 TVEFLMDADSGKFYFIEVNP 300


>gi|311900598|dbj|BAJ33006.1| putative acyl-CoA carboxylase [Kitasatospora setae KM-6054]
          Length = 455

 Score = 87.1 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 39/219 (17%), Positives = 82/219 (37%), Gaps = 17/219 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   ED     I E   + +            DK  +++++   G+PV P    
Sbjct: 77  AVHPGYGFLSEDPDFAEICEANGLTFIGPPPRVMEQLGDKAVARRLMGEAGLPVLPGSVG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
            +        +   +  P ++K + GG   G+ V++ D  +     ++ +        ++
Sbjct: 137 AVRSPAEARATAARVGYPVILKAVAGGGGRGMAVVRDDAEMAGAYQETRAHARAVFGDER 196

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           L +E+YVDG   +   V+ D   +   +A           K             +P  + 
Sbjct: 197 LYLERYVDGARHIEVQVLCDRHGNAVHLAERDCSVQRRHQK----LIEESPAPNLPDPLR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
           +E+   A     ++G  G +  +F+  P   + F +E+N
Sbjct: 253 REICAAAVRGALSVGYVGAATFEFVLAP-DGRFFLMEVN 290


>gi|254469795|ref|ZP_05083200.1| acetyl-CoA carboxylase, biotin carboxylase [Pseudovibrio sp. JE062]
 gi|211961630|gb|EEA96825.1| acetyl-CoA carboxylase, biotin carboxylase [Pseudovibrio sp. JE062]
          Length = 455

 Score = 87.1 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 84/221 (38%), Gaps = 20/221 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---- 109
            +H  +G   E+     ILE   I +         +  DK+++K      G+PV P    
Sbjct: 77  AVHPGYGFLSENARFAEILEAHGITFIGPTSEHIRVMGDKIQAKTTAKELGIPVVPGSDG 136

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS-----SSWNHGD 164
            I            I  P ++K   GG   G+ V +    +   +  +     +++   D
Sbjct: 137 GITPEDDVHAIAKEIGYPVLVKAAAGGGGRGMKVAQTADDLDTAISTARSESKAAFG-DD 195

Query: 165 QLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            L +E+Y+     +   V+GD   +   +        S + ++  +      PA +  + 
Sbjct: 196 ALYMEKYLGKPRHIEVQVLGDGQGNAIHLGERD---CSLQRRHQKVFEECPSPA-LNEEQ 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             E+  +   A + +  RG    +FL+   + + +++E+N 
Sbjct: 252 RMEIGEICAEAMRKLKYRGAGTIEFLY--ENGEFYFIEMNT 290


>gi|86750370|ref|YP_486866.1| carbamoyl-phosphate synthase L chain, ATP-binding [Rhodopseudomonas
           palustris HaA2]
 gi|86573398|gb|ABD07955.1| Carbamoyl-phosphate synthase L chain, ATP-binding [Rhodopseudomonas
           palustris HaA2]
          Length = 659

 Score = 87.1 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 80/220 (36%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+    A      + +      + A   +K  +K+++   GVP  P    
Sbjct: 87  AVHPGYGFLAENEDFAAACRDAGLVFIGPSAESIASMGNKAGAKEIMLKAGVPCVPGYQG 146

Query: 112 --LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
               +   +     I  P +IK + GG   G+ ++K   ++P  L  + S          
Sbjct: 147 ADQSDAAMIAEAGKIGFPVMIKAVAGGGGRGMRLVKDAAALPDALRSARSEAQGAFGDPT 206

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           +++E+ + D   +   V GD       +            K             +   + 
Sbjct: 207 VILERAIVDPRHIEIQVFGDRYGAAIHLGERDCSVQRRHQK----LIEEAPSPAVSEALR 262

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +++  +A  A +AIG  G    +FL D    + +++E+N 
Sbjct: 263 EQMGTVAVNAVKAIGYEGAGTLEFLLDAQ-GQFYFMEMNT 301


>gi|302420575|ref|XP_003008118.1| methylcrotonoyl-CoA carboxylase subunit alpha [Verticillium
           albo-atrum VaMs.102]
 gi|261353769|gb|EEY16197.1| methylcrotonoyl-CoA carboxylase subunit alpha [Verticillium
           albo-atrum VaMs.102]
          Length = 683

 Score = 87.1 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 41/224 (18%), Positives = 83/224 (37%), Gaps = 22/224 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            LH  +G   E+    +  E   I +      A     DK RSK+++++ GVP  P    
Sbjct: 108 ALHPGYGFLSENPAFASRCEKEGIVFVGPPAKAMHDMGDKARSKEIMTAAGVPCVPGY-- 165

Query: 114 NRFTMDSQHLI------SPPYVIKPLKGGSSLGIIVIKKDQSIPLDL------LQSSSWN 161
           +    +   L+        P ++K +KGG   G+ ++  +   P  L       ++S  +
Sbjct: 166 HGADQEEAQLLQHAREVRFPVLLKSVKGGGGKGMRIVLTEDEFPAQLRSARLEAKASFGD 225

Query: 162 HGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
            G+ +L+E+Y+     +   V  D   +   +            K             + 
Sbjct: 226 GGEVMLVEKYIVRPRHVEVQVFADKHGNCVALGERDCSVQRRHQKIL----EESPAPCLD 281

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
                ++   A  A  A+   G    +F+ D  + + +++E+N 
Sbjct: 282 EATRLDLWDKARKAASAVDYVGAGTVEFILDRDTGEFYFMEMNT 325


>gi|326789550|ref|YP_004307371.1| urea carboxylase [Clostridium lentocellum DSM 5427]
 gi|326540314|gb|ADZ82173.1| urea carboxylase [Clostridium lentocellum DSM 5427]
          Length = 1197

 Score = 87.1 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 44/257 (17%), Positives = 95/257 (36%), Gaps = 32/257 (12%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       E   I +         L   K  ++ +    GVP+ P   +
Sbjct: 77  AIHPGYGFLSENTEFARACEEKGIKFIGPTPEQIELFGLKHSARALAKKAGVPLLPGTEL 136

Query: 114 NRFTMDS---QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQL 166
                ++      I  P ++K   GG  +G+ +    + +          +++  +   +
Sbjct: 137 LSSVEEAVKEAKKIGYPVILKSTAGGGGIGMRICYSFKELKEAYEGVCYLAAANFNNAGV 196

Query: 167 LIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
            +E+Y++    +   + G+A  +   +            K    +    LP K+   +YK
Sbjct: 197 FLEKYIEKSRHVEVQIFGNAYGEAVALGERDCSVQRRNQKVVEESPAPNLPEKVRAAMYK 256

Query: 226 EVQRLAFLA-HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
             + LA  A +Q+ G       +FL+D    K ++LE+N             +    G +
Sbjct: 257 AAEDLAKEASYQSAGT-----VEFLYDEAEEKFYFLEVNT-----------RLQVEHGIT 300

Query: 285 FR----ELLLWMVEDAS 297
                 +L+ WM+++A+
Sbjct: 301 EEVLGLDLVSWMIKEAA 317


>gi|259503438|ref|ZP_05746340.1| carbamoyl-phosphate synthase [Lactobacillus antri DSM 16041]
 gi|259168516|gb|EEW53011.1| carbamoyl-phosphate synthase [Lactobacillus antri DSM 16041]
          Length = 1060

 Score = 87.1 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 35/232 (15%), Positives = 84/232 (36%), Gaps = 19/232 (8%)

Query: 68  VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQHLIS 125
           + A LE   +    + +     + D+    +++   G+     +        +D+   I 
Sbjct: 642 LAAGLEKNGVRILGTSVKDLDAAEDRRIFDEIIKQLGLKQPVGLTATTHQGVIDAATEIG 701

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            P +++P        + ++  +  +   L +++       +LI+ Y++G E     + D 
Sbjct: 702 YPVLVRPSYVLGGKAMEIVYNEDELRQYLKENADVASDHPILIDAYLEGRECEVDAICDG 761

Query: 186 S---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCR 241
               L      +  +  +S        +S  V P +    DI +++         A+ CR
Sbjct: 762 QDVLLPGIMEHIEHAGVHS-------GDSMAVYPPQSFDEDIKRQIVDATKKLAIALKCR 814

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           GI    F+      + + LE+N +   T     P ++   G    ++   ++
Sbjct: 815 GIMNIQFIIH--DHEAYVLEVNPRASRT----VPFLSKITGIEMAQVATRVI 860



 Score = 77.1 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 51/286 (17%), Positives = 103/286 (36%), Gaps = 33/286 (11%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQIDVD---------------------RSVGLV 45
           G ++E + S   G     AL + G++   ++ +                      SV  +
Sbjct: 21  GQAAEFDYS---GTQACLALREEGYETVLVNSNPATIMTDNEIADHVYIEPLTVESVSRI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +    PD     L G  G +  V      +L+ L I    + + +   + D+ + K+++ 
Sbjct: 78  IRKEYPDAILPTLGGQIGLNLAVALSKTGLLDELGIQLLGTKLASIDQAEDREKFKELMQ 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G PV  S  V+     +D  H I  P +++P       G  +   D+ +         
Sbjct: 138 QLGEPVPASQTVSTVAEALDFAHQIGYPVIVRPAFTMGGTGGGMCHNDEELRTIAANGLD 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   Q LIE+ + G  E+   VM DA+ +   +   ++  +     ++  +        
Sbjct: 198 LSPATQCLIEKSIAGYKEVEFEVMRDAADNAMVVCCMEN--FDPVGIHTGDSIVFAPSQT 255

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +    Y+ ++  A    +A+   G        DP S     +E+N 
Sbjct: 256 LSDRDYQMLRDCALKLIRALKIEGGCNVQLALDPNSYHYDVIEVNP 301


>gi|24215436|ref|NP_712917.1| acetyl-CoA carboxylase biotin carboxylase subunit [Leptospira
           interrogans serovar Lai str. 56601]
 gi|45657159|ref|YP_001245.1| acetyl-CoA carboxylase subunit alpha [Leptospira interrogans
           serovar Copenhageni str. Fiocruz L1-130]
 gi|24196559|gb|AAN49935.1| acetyl-CoA carboxylase biotin carboxylase subunit [Leptospira
           interrogans serovar Lai str. 56601]
 gi|45600397|gb|AAS69882.1| acetyl-CoA carboxylase alpha chain [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
          Length = 487

 Score = 87.1 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 46/234 (19%), Positives = 83/234 (35%), Gaps = 17/234 (7%)

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           ++   +   K D      +G   E       LE   + +      +  L  DK+ S+  +
Sbjct: 65  NILEAIKKTKTDAVHPG-YGFLSEKSEFAKALEKENVLFLGPSPESMELMGDKINSRIKM 123

Query: 101 SSCGVPVCPSILVNRFT----MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
            + GVPV P                  I  P +IK   GG   G+  + K +     L  
Sbjct: 124 EASGVPVVPGYNGQNQDPKILQKEAEKIGYPLMIKATAGGGGKGMKRVYKSEEFLFALES 183

Query: 157 S-----SSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLN 210
           +      ++     + +E+YV+    +   V GD   +V  +   +        K     
Sbjct: 184 AQREAQKAFG-DGTVFLEKYVETPRHIEVQVFGDKHGNVMHLFERECSIQRRHQK----V 238

Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
                   +P+ +  E+ R+A  A Q+IG  G    +F+      K ++LE+N 
Sbjct: 239 IEESPAPNLPISLRDEICRVAVKAAQSIGYVGAGTVEFIL-GKDNKFYFLEMNT 291


>gi|22299351|ref|NP_682598.1| acetyl-CoA carboxylase biotin carboxylase subunit
           [Thermosynechococcus elongatus BP-1]
 gi|22295534|dbj|BAC09360.1| biotin carboxylase [Thermosynechococcus elongatus BP-1]
          Length = 453

 Score = 87.1 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 83/220 (37%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     I    +I +      A     DK  +K  +   GVP  P    
Sbjct: 78  AIHPGYGFLAENARFAEICADHKITFIGPSPAAMRAMGDKSTAKATMQRVGVPTIPGSDG 137

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSWNHGDQ 165
            +            I  P +IK   GG   G+ +++ ++ +         ++ +      
Sbjct: 138 LVQDEETARAIARQIGYPLMIKATAGGGGRGMRLVRSEEELGRSLSAAQGEAEAAFGNAG 197

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E++++    +   ++ D+  +V  +        S + ++  L      PA +  ++ 
Sbjct: 198 VYLERFIENPRHIEFQILADSYGNVIHLGERD---CSVQRRHQKLLEEAPSPA-LTPELR 253

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            ++   A  A +AI   G    +FL D  +   +++E+N 
Sbjct: 254 AKMGEAAVTAAKAINYVGAGTIEFLLDGQNN-FYFMEMNT 292


>gi|121999139|ref|YP_001003926.1| urea amidolyase-like protein [Halorhodospira halophila SL1]
 gi|121590544|gb|ABM63124.1| urea amidolyase related protein [Halorhodospira halophila SL1]
          Length = 1200

 Score = 87.1 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 44/257 (17%), Positives = 89/257 (34%), Gaps = 32/257 (12%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       E   I +             K  ++ +  +  VP+ P   +
Sbjct: 77  AIHPGYGFLSENDAFAEACEAAGIAFIGPTPQQMRDFGLKHTARALAEASDVPMLPGTGL 136

Query: 114 NRFTMDS---QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN----HGDQL 166
                ++      I  P ++K   GG  +G+ +     ++          +      D L
Sbjct: 137 LDSMDEAVAEAARIGYPVMLKSTAGGGGIGMQLCHDAAALREAYDSVRRLSANNFSNDGL 196

Query: 167 LIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIY 224
            +E+YV+ G  +   + GD    V  +           L+  +       PA  +  D  
Sbjct: 197 FLEKYVEHGRHIEVQLFGDGCGTVIALGE-----RDCSLQRRNQKVVEETPAPGLDADTR 251

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAY 280
           + +   A    + +  R     +++ D  +   ++LE+N +     G+T         A 
Sbjct: 252 QALLDAAERLGRQVAYRSAGTVEYILDADTGAFYFLEMNTRLQVEHGVTE--------AV 303

Query: 281 AGYSFRELLLWMVEDAS 297
            G    +L+ WMVE A+
Sbjct: 304 TGI---DLVGWMVEAAA 317


>gi|312870006|ref|ZP_07730145.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus oris
           PB013-T2-3]
 gi|311094591|gb|EFQ52896.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus oris
           PB013-T2-3]
          Length = 1060

 Score = 86.7 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 47/297 (15%), Positives = 102/297 (34%), Gaps = 38/297 (12%)

Query: 22  CASALEDAGFKVSQ-------IDVDRSVGLVLAHLKPDL--AFNVLHGNFGEDGLVQ--- 69
           C  AL+  G++          +  D S+   L      L    NV+     E  +VQ   
Sbjct: 577 CVKALQALGYEAIVMNSNPETVSTDFSISDKLYFEPLTLEDVMNVVDLEQPEGVIVQFGG 636

Query: 70  -------AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDS 120
                  A LE   +    + +     + D+    +++    +     +        +D+
Sbjct: 637 QTAINLAAGLEKNGVRILGTSVKDLDAAEDRRIFDEIIKQLDLKQPVGLTATTHQGVIDA 696

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +++P        + ++  +  +   L +++       +LI+ Y++G E    
Sbjct: 697 AKQIGYPVLVRPSYVLGGKAMEIVYNEDELRQYLKENADVASDHPILIDAYLEGRECEVD 756

Query: 181 VMGDAS---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQ 236
            + D     L      +  +  +S        +S  V P +    DI +++         
Sbjct: 757 AICDGQDVLLPGIMEHIEHAGVHS-------GDSMAVYPPQSFDDDIKQQIVDATKKLAI 809

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           A+ CRGI    F+      + + LE+N +   T     P ++   G    ++   ++
Sbjct: 810 ALKCRGIMNIQFIIH--DHEAYVLEVNPRASRT----VPFLSKITGIEMAQVATRVI 860



 Score = 74.0 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 50/286 (17%), Positives = 101/286 (35%), Gaps = 33/286 (11%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQIDVD---------------------RSVGLV 45
           G ++E + S   G     AL + G++   ++ +                      SV  +
Sbjct: 21  GQAAEFDYS---GTQACLALREEGYETVLVNSNPATIMTDNEIADHVYIEPLTVESVSRI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +    PD     L G  G +  V      +L+ L I    + + +   + D+ + K+++ 
Sbjct: 78  IRKEYPDAILPTLGGQIGLNLAVALSKTGLLDELGIQLLGTKLASIDEAEDREKFKELMQ 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G PV  S  V      +   H I  P +++P       G  +   D+ +         
Sbjct: 138 RLGEPVPASQTVETVDEALVFAHQIGYPVIVRPAFTMGGTGGGMCHNDEELRTIAANGLD 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   Q LIE+ + G  E+   VM DA+ +   +   ++  +     ++  +        
Sbjct: 198 LSPATQCLIEKSIAGYKEVEFEVMRDAADNAMVVCCMEN--FDPVGIHTGDSIVFAPSQT 255

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +    Y+ ++  A    +A+   G        DP S     +E+N 
Sbjct: 256 LSDRDYQMLRDCALKLIRALKIEGGCNVQLALDPNSYHYDVIEVNP 301


>gi|226287033|gb|EEH42546.1| methylcrotonoyl-CoA carboxylase subunit alpha [Paracoccidioides
           brasiliensis Pb18]
          Length = 716

 Score = 86.7 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 45/219 (20%), Positives = 81/219 (36%), Gaps = 16/219 (7%)

Query: 58  LHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
           +H  +G   E+           + +      A     DK RSK+++++ GVP  P     
Sbjct: 95  IHPGYGFLSENSTFAQKCTQAGLVFIGPPPKAIEAMGDKSRSKEIMTTAGVPCVPGYHGE 154

Query: 115 RFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG----DQL 166
              MD        I  P +IK +KGG   G+ +    ++    L+ + S        D +
Sbjct: 155 NQDMDFLEAEAERIKFPVLIKAVKGGGGKGMRIASSKETFRDQLISAKSEAMNSFGNDTM 214

Query: 167 LIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
           L+E+Y+     +   V  D   +   +            K             +P    K
Sbjct: 215 LVEKYITTPRHIEVQVFADKHGNCVALGERDCSIQRRHQKIL----EESPAPHLPEATRK 270

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           ++   A  A  A+G  G    +F+FD  + + F++E+N 
Sbjct: 271 DIWDRARAAALAVGYEGAGTVEFIFDNDTGEFFFMEMNT 309


>gi|319649680|ref|ZP_08003836.1| acetyl-CoA carboxylase [Bacillus sp. 2_A_57_CT2]
 gi|317398842|gb|EFV79524.1| acetyl-CoA carboxylase [Bacillus sp. 2_A_57_CT2]
          Length = 447

 Score = 86.7 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 36/219 (16%), Positives = 82/219 (37%), Gaps = 17/219 (7%)

Query: 58  LHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
           +H  +G   E+ +    +    I +         L  DK+ S+  +   GVPV P     
Sbjct: 77  IHPGYGFLSENAVFARAVINAGIAFIGPDPETIELMGDKIVSRNTMKEAGVPVVPGSGEG 136

Query: 115 RFTMDSQHLI----SPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGDQL 166
             T++    +      P ++K   GG  +G++  + +Q++         ++ ++   D++
Sbjct: 137 TSTLEEACRLADSMGYPVMLKASGGGGGIGMVRCENEQALAKSFDSTKARAKAYFGSDEV 196

Query: 167 LIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
            IE+Y++    +   V GD   ++  +            K             +     +
Sbjct: 197 FIEKYIENARHVEIQVFGDHHGNIVHLFERDCSIQRRHQK----VVEESPSPFLSEQTKQ 252

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           ++   A  A +A+  +     +F+ D      ++LE+N 
Sbjct: 253 KMYETALTAAKAVNYKNAGTIEFIVDEQEN-FYFLEMNT 290


>gi|156394457|ref|XP_001636842.1| predicted protein [Nematostella vectensis]
 gi|156223949|gb|EDO44779.1| predicted protein [Nematostella vectensis]
          Length = 711

 Score = 86.7 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 84/222 (37%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV-----C 108
            +H  +G   E      + +   I +      A      K  SK ++S  GVP+      
Sbjct: 110 AIHPGYGFLSESPEFADLCQEENIIFIGPPASAIRDMGIKSTSKSIMSDAGVPIIQGYHG 169

Query: 109 PSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GD 164
               V R   +++  I  P ++K ++GG   G+ ++         L  + + +      D
Sbjct: 170 EDQSVERLQQEAER-IGYPVMLKAVRGGGGKGMRIVNSPDEFHEMLESAKNESIKSFNDD 228

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            +L+E++V+    +   V GD   +V  +           ++          PA  +  +
Sbjct: 229 SMLVEKFVETPRHVEVQVFGDRQGNVVYLYE-----RDCSVQRRHQKIIEEAPAPGVSDE 283

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + + +   A  A +A+G  G    +F+ D      +++E+N 
Sbjct: 284 VRRSIGEAAVRAAKAVGYFGAGTVEFIMDSSQN-FYFMEMNT 324


>gi|186472806|ref|YP_001860148.1| urea carboxylase [Burkholderia phymatum STM815]
 gi|184195138|gb|ACC73102.1| urea carboxylase [Burkholderia phymatum STM815]
          Length = 1203

 Score = 86.7 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 36/234 (15%), Positives = 79/234 (33%), Gaps = 27/234 (11%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN---RFTMDSQHLISPPYVIKP 132
            I +             K  ++ + +  GVP+     +       +++   +  P ++K 
Sbjct: 99  GIAFIGPTPAQLRAFGLKHTARAIAAEQGVPMLEGTGLLDGLEAALEAAKRVGYPVMLKS 158

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQLLIEQYVD-GIELTCGVMGDASL 187
             GG  +G+ V + D+ +                   + +E+Y++    L   V GD   
Sbjct: 159 TAGGGGIGMRVCRSDEELAGQFDIVKRLGQNNFSDAGVFLEKYIEKARHLEVQVFGDGKG 218

Query: 188 DVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
               + V          K             +P  +   +   A    QA+  R     +
Sbjct: 219 AAIALGVRDCSVQRRNQKVL----EETPAPNLPDGVEAALCDAAIRLAQAVSYRSAGTVE 274

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR----ELLLWMVEDAS 297
           F++D  + + ++LE+N             +    G + +    +L+ WM+E A+
Sbjct: 275 FVYDSDAARFYFLEVNT-----------RLQVEHGVTEQVWGVDLVRWMIELAA 317


>gi|89053638|ref|YP_509089.1| 3-methylcrotonoyl-CoA carboxylase, alpha subunit [Jannaschia sp.
           CCS1]
 gi|88863187|gb|ABD54064.1| 3-methylcrotonoyl-CoA carboxylase, alpha subunit [Jannaschia sp.
           CCS1]
          Length = 667

 Score = 86.7 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 43/224 (19%), Positives = 82/224 (36%), Gaps = 23/224 (10%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E   + +      A      K  +K ++   GVPV P    
Sbjct: 102 AIHPGYGFLSENPEFVEAVEAAGLTFIGPSASAIRAMGLKDAAKALMEEAGVPVVPGYHG 161

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS-----SSWNHGDQL 166
                  D    +  P +IK + GG   G+  + + Q     L  +     +++   D +
Sbjct: 162 ASQDGLADRAAEVGYPVLIKAVAGGGGKGMRRVDQAQDFEEALASAQGEAGTAFG-NDAV 220

Query: 167 LIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIY 224
           LIE++V     +   V GD +  V              L+          PA  +  ++ 
Sbjct: 221 LIEKFVATPRHIEVQVFGDGTRAV------HLFERDCSLQRRHQKVIEEAPAPGMTPEMR 274

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSR----KVFWLEINV 264
             + + A  A +AIG +G    +F+ D        + +++E+N 
Sbjct: 275 AAMGQAAVRAAEAIGYKGAGTVEFIVDATDGLRADRFYFMEMNT 318


>gi|304391575|ref|ZP_07373517.1| methylcrotonoyl-CoA carboxylase subunit alpha [Ahrensia sp. R2A130]
 gi|303295804|gb|EFL90162.1| methylcrotonoyl-CoA carboxylase subunit alpha [Ahrensia sp. R2A130]
          Length = 643

 Score = 86.7 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 41/224 (18%), Positives = 87/224 (38%), Gaps = 22/224 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+     ++    + +      A +    K R+K ++   GVPV P    
Sbjct: 77  AIHPGYGFLSENAKFATLVAEAGMIFVGPPPSAISAMGLKDRAKSIMDDAGVPVVPGYHG 136

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS-----SSWNHGD 164
                D      + I  P +IK + GG   G+  ++K       L  +     +++ + D
Sbjct: 137 ENQNPDLLRRKAYEIGYPVLIKAVAGGGGKGMRKVEKPAEFAEALSAAMREAQAAFGNDD 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            +L+E++++    +   V GD+  +V              L+          PA  +  +
Sbjct: 197 -VLVEKFIENPRHIEVQVFGDSQGNVV-----HLFERDCSLQRRHQKVIEEAPAPGMTPE 250

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLF--DPLSRKVFWLEINV 264
           +   + + A  A +A+G +G    +F+   D      +++E+N 
Sbjct: 251 LRAAMGQAACRAAEAVGYQGAGTVEFIVSGDLGEDSFYFMEMNT 294


>gi|302505307|ref|XP_003014360.1| urea amidolyase, putative [Arthroderma benhamiae CBS 112371]
 gi|291178181|gb|EFE33971.1| urea amidolyase, putative [Arthroderma benhamiae CBS 112371]
          Length = 912

 Score = 86.7 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 54/287 (18%), Positives = 97/287 (33%), Gaps = 44/287 (15%)

Query: 13  EVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNV--------------- 57
           E++L  G+         G +V+ +  D       A   P  A+N+               
Sbjct: 92  EIALRVGRTAGQH----GIRVTTLYTDPDAHAQHALSSP-FAYNLGETSAYLDGDRIIEI 146

Query: 58  --------LHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP 106
                   +H  +G   E+           + +      A     DK RSK+++++ GVP
Sbjct: 147 AKREGCKGIHPGYGFLSENAGFAKKCTDAGLIFIGPPPSAIDAMGDKSRSKEIMTAAGVP 206

Query: 107 VCPSILVNRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
             P        ++        I  P +IK +KGG   G+ + +        L  + S   
Sbjct: 207 CVPGYHGTNQDVNFLAAEAEKIKYPVLIKAVKGGGGKGMRIARSAAEFQDQLRSAKSEAK 266

Query: 163 ----GDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
                D +LIE+Y+     +   V  D   +   +            K            
Sbjct: 267 SSFGDDTMLIEKYITTPRHIEVQVFADQHGNSVALGERDCSVQRRHQKVL----EESPAP 322

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +P    K++   A  A  A+G  G    +F+FD  + + F++E+N 
Sbjct: 323 HLPEATRKDLWAKARDAALAVGYEGAGTVEFIFDNDTGEFFFMEMNT 369


>gi|78776821|ref|YP_393136.1| biotin carboxylase-like [Sulfurimonas denitrificans DSM 1251]
 gi|78497361|gb|ABB43901.1| Pyruvate carboxylase biotin carboxylase subunit [Sulfurimonas
           denitrificans DSM 1251]
          Length = 485

 Score = 86.7 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 50/243 (20%), Positives = 90/243 (37%), Gaps = 24/243 (9%)

Query: 35  QIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSM 91
            +D DR + L L     D     +H  +G   E+       E   I +        AL  
Sbjct: 63  YLDYDRIITLALKA-GCD----AIHPGYGFLSENAEFAQSCEDRGIIFIGPKPAHIALFG 117

Query: 92  DKMRSKQVVSSCGVPVCPSI---LVNRFTMDS-QHLISPPYVIKPLKGGSSLGIIVIKK- 146
           DKM SK  +   GVPV       +V++         I  P +IK   GG   G+ ++K  
Sbjct: 118 DKMASKVAMREIGVPVLEGTDEPIVDKAEGGKIAAKIGFPIIIKAAFGGGGRGMRIVKSA 177

Query: 147 ---DQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSY 202
              D+       ++  +     + IE+YV+    +   V+ D   +V  +          
Sbjct: 178 KLFDEMFDSATNEAKKYFGKGDVFIEKYVENPRHIEIQVVADKYGNVVHLGERDCSIQRR 237

Query: 203 ELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
             K        + P  ++     KE+ R++  A   +G   +   ++L D     ++++E
Sbjct: 238 HQK-----VIEIAPSPRLNPAARKELYRISTKAMLKLGYESVGTVEYLLDENDN-IYFIE 291

Query: 262 INV 264
           +N 
Sbjct: 292 MNT 294


>gi|262368319|ref|ZP_06061648.1| urea carboxylase [Acinetobacter johnsonii SH046]
 gi|262315997|gb|EEY97035.1| urea carboxylase [Acinetobacter johnsonii SH046]
          Length = 1201

 Score = 86.7 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 32/220 (14%), Positives = 80/220 (36%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+     + E   I +             K  ++++     VP+ P   +
Sbjct: 77  AIHPGYGFLSENAEFCDLCESQGIVFLGPNSAQMCSFGLKHTARELAIQANVPLLPGSQL 136

Query: 114 NRFTMDS---QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQL 166
                ++    + I  P ++K   GG  +G+ ++  +  +          + +      L
Sbjct: 137 LADEAEALVEANRIGYPVMLKSTAGGGGIGMRLVWNEAELKDAYATVSYLAQANFKDAGL 196

Query: 167 LIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIY 224
            +E++V+    +   + GD    V  +           ++  +       PA  +  +  
Sbjct: 197 YLEKFVENARHIEVQIFGDGQGLVLALGE-----RDCSVQRRNQKVIEETPAPHLNDEQR 251

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +Q +A    Q++  R     +F+ D  +++ ++LE+N 
Sbjct: 252 AYIQGVAIQLMQSVNYRSAGTVEFVMDTDTQQFYFLEVNT 291


>gi|90424691|ref|YP_533061.1| carbamoyl-phosphate synthase L chain, ATP-binding [Rhodopseudomonas
           palustris BisB18]
 gi|90106705|gb|ABD88742.1| Carbamoyl-phosphate synthase L chain, ATP-binding [Rhodopseudomonas
           palustris BisB18]
          Length = 664

 Score = 86.7 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 37/234 (15%), Positives = 77/234 (32%), Gaps = 15/234 (6%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
            ++         D      +G   E+    A      + +      + A   +K  +K +
Sbjct: 74  EAIIAAAKQSGADAVHPG-YGFLAENQDFAAACRDAGLLFIGPSAASIAAMANKAGAKAI 132

Query: 100 VSSCGVPVCPSI----LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
           +   GVP  P        +         I  P +IK + GG   G+ +++   +    L 
Sbjct: 133 MRKAGVPCVPGYQGADQSDEAMAREAASIGFPVMIKAVAGGGGRGMRLVEDAAAFAEALR 192

Query: 156 QSSSWNH----GDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLN 210
            + S          +++E+ + +   +   V GD       +            K     
Sbjct: 193 GARSEAQGGFGDPTVILERAIVNPRHIEIQVFGDRYGHAVHLGERDCSVQRRHQK----L 248

Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
                   +   + +E+  +A  A +AIG  G    +FL D    + +++E+N 
Sbjct: 249 IEEAPSPAVSQALREEMGTVAVNAAKAIGYEGAGTLEFLLDG-DGRFYFMEMNT 301


>gi|332523166|ref|ZP_08399418.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Streptococcus
           porcinus str. Jelinkova 176]
 gi|332314430|gb|EGJ27415.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Streptococcus
           porcinus str. Jelinkova 176]
          Length = 457

 Score = 86.7 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 75/220 (34%), Gaps = 16/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  FG   E+     + E + I +            DK+ ++  +   GVPV P    
Sbjct: 77  AIHPGFGFLSENSKFATMCEEMNIKFIGPAATIMDKMGDKINARAEMQKAGVPVIPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
            +   +   +    +  P ++K   GG   GI  +     +      +S           
Sbjct: 137 EVFSVQEAQEVADKVGYPIMLKASAGGGGKGIRKVTTASDLKEAFESASQEALSAFGNGA 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+ +     +   ++GD+   V  +            K             I   + 
Sbjct: 197 MYVEKVIYPARHIEVQILGDSYGHVIHLGERDCSLQRNNQKVL----EESPSIAIGETLR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           KE+   A  A QA+G       +FL D  S + +++E+N 
Sbjct: 253 KEMGDAAVKAAQAVGYENAGTIEFLLDEKSGQFYFMEMNT 292


>gi|317128423|ref|YP_004094705.1| acetyl-CoA carboxylase, biotin carboxylase [Bacillus
           cellulosilyticus DSM 2522]
 gi|315473371|gb|ADU29974.1| acetyl-CoA carboxylase, biotin carboxylase [Bacillus
           cellulosilyticus DSM 2522]
          Length = 453

 Score = 86.7 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 44/220 (20%), Positives = 83/220 (37%), Gaps = 16/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     I E   I +      A +    K  ++  + + GVPV P    
Sbjct: 77  AIHPGYGFLAENAAFAEICEECNITFIGPSPEAISQMGTKDVARTTMKNAGVPVVPGSEG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGDQ 165
            I      + +   I  P +IK   GG   GI V K + S+   +     ++ +      
Sbjct: 137 IISTIEEGVTTAEEIGYPVIIKATAGGGGKGIRVAKDEASLRKGISITQEEAKANFGNPG 196

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+Y++    +   VM D   +V  +            K             +  ++ 
Sbjct: 197 VYLEKYIEDFRHVEIQVMADKHGNVIHLGERDCTIQRRLQK----LVEETPSPALTEEVR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           KE+   +  A QA+   G    +F+FD  + K +++E+N 
Sbjct: 253 KEMGEASVRAAQAVNYVGAGTIEFIFDHKNNKFYFMEMNT 292


>gi|254393027|ref|ZP_05008190.1| acetyl/propionyl CoA carboxylase alpha subunit [Streptomyces
           clavuligerus ATCC 27064]
 gi|294812775|ref|ZP_06771418.1| Acetyl/propionyl CoA carboxylase alpha subunit [Streptomyces
           clavuligerus ATCC 27064]
 gi|197706677|gb|EDY52489.1| acetyl/propionyl CoA carboxylase alpha subunit [Streptomyces
           clavuligerus ATCC 27064]
 gi|294325374|gb|EFG07017.1| Acetyl/propionyl CoA carboxylase alpha subunit [Streptomyces
           clavuligerus ATCC 27064]
          Length = 650

 Score = 86.7 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 43/216 (19%), Positives = 84/216 (38%), Gaps = 14/216 (6%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP----SILVN 114
           +G   E+       E   + +      A AL  DK+R+K+ V + GVPV P    S L +
Sbjct: 84  YGFLAENAAFARACEEAGLVFIGPPAGAIALMGDKIRAKETVRAAGVPVVPGSSGSGLSD 143

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQLLIEQ 170
               D+      P ++KP  GG   G+ +++   ++P ++  +          D LL+E+
Sbjct: 144 AELADAARETGMPVLLKPSAGGGGKGMRLVRDAAALPEEIAAARREARASFGDDTLLVER 203

Query: 171 YVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           ++D    +   ++ D   +V  +   +        K             +     + +  
Sbjct: 204 WIDRPRHIEIQILADGHGNVVHLGERECSLQRRHQKI----VEEAPSVLLTPGQRERMGA 259

Query: 230 LAFLAHQAIGCRGISRSDFLF-DPLSRKVFWLEINV 264
            A  A ++ G RG    +F+         F++E+N 
Sbjct: 260 AAVDAARSCGYRGAGTVEFIVPGGAPDDHFFMEMNT 295


>gi|193216335|ref|YP_001997534.1| carbamoyl-phosphate synthase L chain ATP-binding [Chloroherpeton
           thalassium ATCC 35110]
 gi|193089812|gb|ACF15087.1| Carbamoyl-phosphate synthase L chain ATP-binding [Chloroherpeton
           thalassium ATCC 35110]
          Length = 485

 Score = 86.7 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 90/222 (40%), Gaps = 17/222 (7%)

Query: 56  NVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
           N +H  +G   E+ +    ++   + +            DK+R+K+      VPV P + 
Sbjct: 79  NAIHPGWGFLSENAVFAKKVQDAGLIWIGPSAEVIDKMGDKIRAKKTAVEANVPVIPGVN 138

Query: 113 VNRFTMD-----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----G 163
             +   D         ++ P +IK   GG   G++ ++++  +     Q+ S        
Sbjct: 139 NPKSPDDIRKWMKDEDVAYPIMIKATAGGGGKGMVRVQQECELEGAFQQAKSEAKKSFGD 198

Query: 164 DQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD 222
           +++L+E+++     +   ++ D+  +V  +   +        K             I  +
Sbjct: 199 EEVLVEKFIQKSRHIEVQIVADSHGNVIHLFERECTIQRRNQK----VIEEAPSPSITPE 254

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           I +++ + A    +AIG       +FLFD  ++K ++LE+N 
Sbjct: 255 IRQDICQTAVRLMKAIGYTSAGTVEFLFDADTQKFYFLEVNT 296


>gi|73748073|ref|YP_307312.1| pyruvate carboxylase subunit A [Dehalococcoides sp. CBDB1]
 gi|147668897|ref|YP_001213715.1| pyruvate carboxylase subunit A [Dehalococcoides sp. BAV1]
 gi|73659789|emb|CAI82396.1| acetyl-CoA carboxylase, biotin carboxylase [Dehalococcoides sp.
           CBDB1]
 gi|146269845|gb|ABQ16837.1| pyruvate carboxylase subunit A [Dehalococcoides sp. BAV1]
          Length = 498

 Score = 86.7 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 43/234 (18%), Positives = 89/234 (38%), Gaps = 16/234 (6%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
           + +  V      D      +G   E+      LE   I +         L  +K+ +++ 
Sbjct: 64  KKIVAVAKKSGVDGVHPG-YGFLSENPGFALALEKAGIKFVGPSSRVIELMGNKIAARRE 122

Query: 100 VSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
           +   GVPV P     +       ++   I  P +IKP  GG  +G+ V      +   + 
Sbjct: 123 MKKAGVPVLPGTEGCVSGIEQATEAAAAIGYPVIIKPSGGGGGIGMRVANGPDELKDAIE 182

Query: 156 QSSSWNHGD----QLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLN 210
            S           ++ IE+Y+ +   +   +MGD+  ++  +   +    S + +Y  L 
Sbjct: 183 SSQKVAGNTFGLAEVYIEKYISNPRHIEIQIMGDSQGNIVYLGERE---CSIQRRYQKL- 238

Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
                   I  ++ K++  +A  A + +   G    +F+F   + + ++LE N 
Sbjct: 239 IEESPSPVITPELRKKMGEVAVKAGKWVNYEGAGTIEFIF--SNGQFYFLEANT 290


>gi|77463759|ref|YP_353263.1| acetyl-CoA carboxylase biotin carboxylase subunit [Rhodobacter
           sphaeroides 2.4.1]
 gi|77388177|gb|ABA79362.1| biotin carboxylase / acetyl-coenzyme A carboxylase carboxyl
           transferase subunit alpha [Rhodobacter sphaeroides
           2.4.1]
          Length = 448

 Score = 86.7 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 78/220 (35%), Gaps = 18/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---- 109
            +H  +G   E+      L+   I +         +  DK+ +K  + + GVP  P    
Sbjct: 77  AVHPGYGFLSENAAFAQALQDHGIEFIGPTADHIRIMGDKITAKDTMKALGVPCVPGSDG 136

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
            +      + +   I  P +IK   GG   G+ V + +Q + +       ++ +    D+
Sbjct: 137 GVPDYETAIATARDIGFPVIIKATAGGGGRGMKVARNEQELEIAFRTARSEAKAAFGNDE 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+Y+     +   V GD       +            K             I  ++ 
Sbjct: 197 VYMEKYLQKPRHIEIQVFGDGKGRAVHLGERDCSLQRRHQKVF----EEAPGPVITPEMR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            E+ R+   A   I   G    +FL+     + +++E+N 
Sbjct: 253 AEIGRICADAVARINYIGAGTIEFLY--EDGQFYFIEMNT 290


>gi|317133325|ref|YP_004092639.1| urea carboxylase [Ethanoligenens harbinense YUAN-3]
 gi|315471304|gb|ADU27908.1| urea carboxylase [Ethanoligenens harbinense YUAN-3]
          Length = 1198

 Score = 86.7 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 41/256 (16%), Positives = 87/256 (33%), Gaps = 30/256 (11%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+           I +         L   K  ++ +    GVP+ P   +
Sbjct: 77  AIHPGYGFLSENADFARRCAENGIAFIGPTPEQIELFGLKHSARALAKKAGVPLPPGTGL 136

Query: 114 NRFTM---DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQL 166
            +      +S   I  P ++K   GG  +G+ V   +  +          +++      +
Sbjct: 137 LKDAAQAVESAARIGYPVMLKSTAGGGGIGMRVCSNETELHAAFESVRHLAAANFGNSGI 196

Query: 167 LIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
            +E+YV     +   + G AS +V  I            K             +P  + +
Sbjct: 197 FLEKYVPHARHIEVQIFGSASGEVVAIGERDCSVQRRNQK----VMEETPAPDLPQAVRE 252

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS- 284
           ++   A    +    R     ++L+D   +  ++LE+N             +    G + 
Sbjct: 253 DMHASAVRFARMAQYRSAGTVEYLYDKDEKTYYFLEVNT-----------RLQVEHGVTE 301

Query: 285 --FR-ELLLWMVEDAS 297
             +  +L+ WMV +A+
Sbjct: 302 EVYGIDLVEWMVLEAA 317


>gi|84499425|ref|ZP_00997713.1| acetyl-CoA carboxylase [Oceanicola batsensis HTCC2597]
 gi|84392569|gb|EAQ04780.1| acetyl-CoA carboxylase [Oceanicola batsensis HTCC2597]
          Length = 449

 Score = 86.7 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 76/220 (34%), Gaps = 18/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---- 109
            +H  +G   E+     I+E   I +         +  DK+ +K  + + GVP  P    
Sbjct: 77  AIHPGYGFLSENAAFVQIVEDHGITFIGPTAEHIRVMGDKITAKDTMKALGVPCVPGSDG 136

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
            +            +  P +IK   GG   G+ V + +Q +         ++ +    D+
Sbjct: 137 GVPDLAAARKLSGEMGYPVIIKATAGGGGRGMKVARSEQELESAFQNARSEAKAAFGNDE 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+Y+     +   V GD       +            K             I  +  
Sbjct: 197 VYIEKYLTTPRHIEIQVFGDGKGQAVHLGERDCSLQRRHQKVF----EEAPGPCITPEER 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            E+ R+   A   I   G    +FL+   + + +++E+N 
Sbjct: 253 AEIGRVCADAVARINYAGAGTIEFLY--ENGEFYFIEMNT 290


>gi|260430927|ref|ZP_05784898.1| pyruvate carboxylase [Silicibacter lacuscaerulensis ITI-1157]
 gi|260414755|gb|EEX08014.1| pyruvate carboxylase [Silicibacter lacuscaerulensis ITI-1157]
          Length = 1145

 Score = 86.7 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 39/229 (17%), Positives = 77/229 (33%), Gaps = 30/229 (13%)

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV 105
           L    PD            D  VQ       I +            DK  +++V  + GV
Sbjct: 87  LLSENPDFV----------DACVQN-----GITFIGPKAETMRALGDKASARKVAIAAGV 131

Query: 106 PVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ----S 157
           PV P+  V    MD+       I  P ++K   GG   G+  I  +  +   +L+    +
Sbjct: 132 PVIPATEVLGDDMDAIRKEAAEIGYPLMLKASWGGGGRGMRPIYSEDELEEKVLEGRREA 191

Query: 158 SSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216
            +     +  +E+ +     +   ++GD    +  +           ++  +       P
Sbjct: 192 EAAFGNGEGYLEKMITRARHVEVQILGDKHGQIYHLYE-----RDCSVQRRNQKVVERAP 246

Query: 217 AK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           A  +  +   E+  L       +        +FL D  + K +++E+N 
Sbjct: 247 APYLTEEQRAEICDLGRRICAHVNYECAGTVEFLMDMETGKFYFIEVNP 295


>gi|126462589|ref|YP_001043703.1| acetyl-CoA carboxylase biotin carboxylase subunit [Rhodobacter
           sphaeroides ATCC 17029]
 gi|221639630|ref|YP_002525892.1| acetyl-CoA carboxylase biotin carboxylase subunit [Rhodobacter
           sphaeroides KD131]
 gi|332558615|ref|ZP_08412937.1| acetyl-CoA carboxylase biotin carboxylase subunit [Rhodobacter
           sphaeroides WS8N]
 gi|126104253|gb|ABN76931.1| acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha /
           biotin carboxylase [Rhodobacter sphaeroides ATCC 17029]
 gi|221160411|gb|ACM01391.1| Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha /
           biotin carboxylase [Rhodobacter sphaeroides KD131]
 gi|332276327|gb|EGJ21642.1| acetyl-CoA carboxylase biotin carboxylase subunit [Rhodobacter
           sphaeroides WS8N]
          Length = 448

 Score = 86.7 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 78/220 (35%), Gaps = 18/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---- 109
            +H  +G   E+      L+   I +         +  DK+ +K  + + GVP  P    
Sbjct: 77  AVHPGYGFLSENAAFAQALQDHGIEFIGPTADHIRIMGDKITAKDTMKALGVPCVPGSDG 136

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
            +      + +   I  P +IK   GG   G+ V + +Q + +       ++ +    D+
Sbjct: 137 GVPDYETAIATARDIGFPVIIKATAGGGGRGMKVARNEQELEIAFRTARSEAKAAFGNDE 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+Y+     +   V GD       +            K             I  ++ 
Sbjct: 197 VYMEKYLQKPRHIEIQVFGDGKGRAVHLGERDCSLQRRHQKVF----EEAPGPVITPEMR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            E+ R+   A   I   G    +FL+     + +++E+N 
Sbjct: 253 AEIGRICADAVARINYIGAGTIEFLY--EDGQFYFIEMNT 290


>gi|317046831|ref|YP_004114479.1| urea carboxylase [Pantoea sp. At-9b]
 gi|316948448|gb|ADU67923.1| urea carboxylase [Pantoea sp. At-9b]
          Length = 1205

 Score = 86.7 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 31/203 (15%), Positives = 67/203 (33%), Gaps = 12/203 (5%)

Query: 70  AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN---RFTMDSQHLISP 126
           A  E   I +             K R++++ +S GVP+ P   +       +D+   I  
Sbjct: 93  AACEEAGIAFVGPTAQQIGEFGLKHRARELAASAGVPMTPGTPLLSSLEEALDAAERIGY 152

Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQLLIEQYVD-GIELTCGV 181
           P ++K   GG  +G+      +++             +     + +E+ +D    +   +
Sbjct: 153 PVMLKSTAGGGGIGLTRCADAEALRNAWESVRRLGEQFFSDAGVFLERCIDRARHVEVQI 212

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241
            GD S  V  +            K             +P      +   A    + +  R
Sbjct: 213 FGDGSGKVIALGERDCSLQRRNQK----VVEETPAPNLPQATRDALLASAVRLGELVSYR 268

Query: 242 GISRSDFLFDPLSRKVFWLEINV 264
                ++++D      ++LE+N 
Sbjct: 269 SAGTVEYIYDAEQDAFYFLEVNT 291


>gi|21245038|ref|NP_644620.1| urea amidolyase [Xanthomonas axonopodis pv. citri str. 306]
 gi|21110767|gb|AAM39156.1| urea amidolyase [Xanthomonas axonopodis pv. citri str. 306]
          Length = 1215

 Score = 86.7 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 39/251 (15%), Positives = 79/251 (31%), Gaps = 27/251 (10%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
           +G   E+           + +             K  ++ +  + GVP+ P   + +   
Sbjct: 85  YGFLSENTTFAEQCAEAGVVFVGPTPEQVRRFGLKHTARAIAEAAGVPLTPGTGLLQSLD 144

Query: 119 DS---QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS----WNHGDQLLIEQY 171
           D+      I  P ++K   GG  +G+        +             +     + IE +
Sbjct: 145 DAKVAAQHIGYPVMLKSTAGGGGIGLSRCDNAAELATAYDSVQRLGQNFFKDSGVFIEGF 204

Query: 172 V-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQR 229
           V +   +   + GD    V  +           L+          PA  +P      +  
Sbjct: 205 VANARHVEVQIFGDGKGRVVALGE-----RDCSLQRRHQKVVEETPAPHLPDATRAALLD 259

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI---FPEMAAYAGYSFR 286
            A    +A+        +F++D      ++LE+N +       +    P   A  G    
Sbjct: 260 AAVKLGEAVNYVSAGTVEFIYDAARDAFYFLEVNTR-------LQVEHPITEAVTGL--- 309

Query: 287 ELLLWMVEDAS 297
           +L+ WMV  A+
Sbjct: 310 DLVEWMVRIAA 320


>gi|326441274|ref|ZP_08216008.1| acetyl/propionyl CoA carboxylase subunit alpha [Streptomyces
           clavuligerus ATCC 27064]
          Length = 648

 Score = 86.7 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 43/216 (19%), Positives = 84/216 (38%), Gaps = 14/216 (6%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP----SILVN 114
           +G   E+       E   + +      A AL  DK+R+K+ V + GVPV P    S L +
Sbjct: 82  YGFLAENAAFARACEEAGLVFIGPPAGAIALMGDKIRAKETVRAAGVPVVPGSSGSGLSD 141

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQLLIEQ 170
               D+      P ++KP  GG   G+ +++   ++P ++  +          D LL+E+
Sbjct: 142 AELADAARETGMPVLLKPSAGGGGKGMRLVRDAAALPEEIAAARREARASFGDDTLLVER 201

Query: 171 YVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           ++D    +   ++ D   +V  +   +        K             +     + +  
Sbjct: 202 WIDRPRHIEIQILADGHGNVVHLGERECSLQRRHQKI----VEEAPSVLLTPGQRERMGA 257

Query: 230 LAFLAHQAIGCRGISRSDFLF-DPLSRKVFWLEINV 264
            A  A ++ G RG    +F+         F++E+N 
Sbjct: 258 AAVDAARSCGYRGAGTVEFIVPGGAPDDHFFMEMNT 293


>gi|323488923|ref|ZP_08094160.1| acetyl-CoA carboxylase biotin carboxylase subunit [Planococcus
           donghaensis MPA1U2]
 gi|323397315|gb|EGA90124.1| acetyl-CoA carboxylase biotin carboxylase subunit [Planococcus
           donghaensis MPA1U2]
          Length = 449

 Score = 86.7 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 40/215 (18%), Positives = 87/215 (40%), Gaps = 13/215 (6%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVN 114
           +G   E+     + E  ++ +      A +    K  +++ +   GVPV P     +   
Sbjct: 81  YGFLAENASFAELCEACDMMFIGPTADAISRMGTKDVARETMRKAGVPVVPGSTGIVADE 140

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQLLIEQ 170
           +  +     I  P +IK   GG   GI V +  +     L     ++++      + IE+
Sbjct: 141 KDGLRIADEIGFPVIIKATAGGGGKGIRVARTREDFVTGLKMTQKEAAAAFGNPGVYIEK 200

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           +++    +   V+ D+  +   +        S + +   L      PA +  ++  E+  
Sbjct: 201 FIEDFRHIEIQVLADSHGNAIHLGERD---CSIQRRMQKLVEEAPSPA-LSPELRSEMGE 256

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            A  A  A+  RG    +F+FD +++K +++E+N 
Sbjct: 257 AAVKAALAVNYRGAGTVEFIFDAVNQKFYFMEMNT 291


>gi|15430598|dbj|BAB64426.1| vancomycin resistance protein C-2 [Enterococcus casseliflavus]
          Length = 115

 Score = 86.7 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 29/109 (26%), Positives = 55/109 (50%), Gaps = 4/109 (3%)

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
             P   KP + GSS GI  +   + I   L +  ++ +   +L+++ + G+E+ CG++G+
Sbjct: 7   GFPVFFKPNEAGSSKGITKVTCVEEIAPALKE--AFAYCSAVLLQKNIAGVEIGCGILGN 64

Query: 185 ASLDVTEIAVPK--SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
            SL V           F+ +E KY  +++   +PA +P  I  +V+  A
Sbjct: 65  DSLTVGACDAISLVYGFFDFEEKYQLISAKITVPAPLPETIETKVKEQA 113


>gi|325917215|ref|ZP_08179442.1| ATP-grasp enzyme, D-alanine-D-alanine ligase [Xanthomonas
           vesicatoria ATCC 35937]
 gi|325919003|ref|ZP_08181067.1| ATP-grasp enzyme, D-alanine-D-alanine ligase [Xanthomonas
           vesicatoria ATCC 35937]
 gi|325534787|gb|EGD06719.1| ATP-grasp enzyme, D-alanine-D-alanine ligase [Xanthomonas
           vesicatoria ATCC 35937]
 gi|325536605|gb|EGD08374.1| ATP-grasp enzyme, D-alanine-D-alanine ligase [Xanthomonas
           vesicatoria ATCC 35937]
          Length = 73

 Score = 86.7 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 30/55 (54%), Gaps = 1/55 (1%)

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           G++R D        ++   E+N  PG T +S++P++   +G  +R L+  ++E A
Sbjct: 2   GMARVDVFL-CADGRIVINEVNTLPGFTRISMYPKLWQASGLDYRSLITQLIELA 55


>gi|302652216|ref|XP_003017964.1| urea amidolyase, putative [Trichophyton verrucosum HKI 0517]
 gi|291181557|gb|EFE37319.1| urea amidolyase, putative [Trichophyton verrucosum HKI 0517]
          Length = 892

 Score = 86.7 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 54/287 (18%), Positives = 97/287 (33%), Gaps = 44/287 (15%)

Query: 13  EVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNV--------------- 57
           E++L  G+         G +V+ +  D       A   P  A+N+               
Sbjct: 97  EIALRVGRTAGQH----GIRVTTLYTDPDAHAQHALSSP-FAYNLGETSAYLDGDRIIEI 151

Query: 58  --------LHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP 106
                   +H  +G   E+           + +      A     DK RSK+++++ GVP
Sbjct: 152 AKREGCKGIHPGYGFLSENAGFAKKCTDAGLIFIGPPPSAIDAMGDKSRSKEIMTAAGVP 211

Query: 107 VCPSILVNRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
             P        ++        I  P +IK +KGG   G+ + +        L  + S   
Sbjct: 212 CVPGYHGTNQDVNFLAAEAEKIKYPVLIKAVKGGGGKGMRIARSAAEFQDQLRSAKSEAK 271

Query: 163 ----GDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
                D +LIE+Y+     +   V  D   +   +            K            
Sbjct: 272 SSFGDDTMLIEKYITTPRHIEVQVFADQHGNSVALGERDCSVQRRHQKVL----EESPAP 327

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +P    K++   A  A  A+G  G    +F+FD  + + F++E+N 
Sbjct: 328 HLPEATRKDLWAKARDAALAVGYEGAGTVEFIFDNDTGEFFFMEMNT 374


>gi|254503794|ref|ZP_05115945.1| acetyl-CoA carboxylase, biotin carboxylase [Labrenzia alexandrii
           DFL-11]
 gi|222439865|gb|EEE46544.1| acetyl-CoA carboxylase, biotin carboxylase [Labrenzia alexandrii
           DFL-11]
          Length = 447

 Score = 86.7 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 80/220 (36%), Gaps = 18/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     ILE   I +         +  DK+++KQ     G+PV P    
Sbjct: 77  AVHPGYGFLSENARFAEILEAHNIVFIGPTSDHIKIMGDKIQAKQTAKDLGIPVVPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGDQ 165
            +            I  P ++K   GG   G+ V + +  +   L     ++ +    D 
Sbjct: 137 AVTPQDDAHAIAREIGYPVLVKAAAGGGGRGMKVAQTEAELDTALSTARSEAKAAFGDDA 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           L +E+Y+     +   V+GD   +   +            K             +  +  
Sbjct: 197 LYMEKYLGKPRHIEIQVLGDGQGNAVHLGERDCSLQRRHQKVL----EEAPSPSLNPEQR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            E+  +   A + +  RG+   +FL+   + + +++E+N 
Sbjct: 253 AEIGEVVASAMRKLKYRGVGTVEFLY--ENGEFYFIEMNT 290


>gi|221128621|ref|XP_002166024.1| PREDICTED: similar to propionyl-Coenzyme A carboxylase, alpha
           polypeptide [Hydra magnipapillata]
          Length = 1281

 Score = 86.7 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 39/201 (19%), Positives = 76/201 (37%), Gaps = 12/201 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
            E   I +             K  SK +  SCGVP+    +V      +    +I  P +
Sbjct: 168 FENAGIIWIGPSATNIVDFSSKHISKNIARSCGVPIADYAIVESVESCLKESEIIGYPVI 227

Query: 130 IKPLKGGSSLGIIVIKKDQS----IPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGD 184
           +K   GG  +G+   +         PL  L++ S   G ++LIE+++ +   +   ++GD
Sbjct: 228 LKLSSGGGGIGMYRCENKSDVLKYFPLVELKTKSVFKGSKILIEKFLSNCHHIEIQIIGD 287

Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244
            +  V  +A  +        K             +  +  +++   A    Q +  R + 
Sbjct: 288 GNGHVISLAERECSIQRRNQK----LIEEAPSPFLSQETRQKMCSDAIKLAQFVSYRSVG 343

Query: 245 RSDFLFDPLS-RKVFWLEINV 264
             +F+ D     + F+LE+N 
Sbjct: 344 TVEFVVDDSKPNEYFFLEVNT 364


>gi|300867674|ref|ZP_07112319.1| acetyl-CoA carboxylase biotin carboxylase subunit [Oscillatoria sp.
           PCC 6506]
 gi|300334257|emb|CBN57491.1| acetyl-CoA carboxylase biotin carboxylase subunit [Oscillatoria sp.
           PCC 6506]
          Length = 451

 Score = 86.7 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 81/220 (36%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---S 110
            +H  +G   E+     I    +I +      A     DK  +K+ +   GVP  P    
Sbjct: 78  AIHPGYGFLAENAKFAEICADHQITFVGPSPEAMRSMGDKSTAKETMQRVGVPTVPGSGG 137

Query: 111 ILVNRFTMDS-QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
           +L +     +    I  P +IK   GG   G+ +++++  +P  L  +            
Sbjct: 138 LLKDETEAIAIAREIGYPVMIKATAGGGGRGMRLVREECELPKLLAAAQGEADAAFGNPG 197

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E++++    +   ++ D+  +V  +            K             +   + 
Sbjct: 198 IYLEKFIECPRHIEIQILADSHGNVIHLGERDCSIQRRHQKLL----EEAPSPALTPKLR 253

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +++   A  A ++I   G    +FL D    K +++E+N 
Sbjct: 254 EKMGHAAVKAAKSINYTGAGTVEFLLDKS-GKFYFMEMNT 292


>gi|300715227|ref|YP_003740030.1| Urea amidolyase, Yeast-like [Erwinia billingiae Eb661]
 gi|299061063|emb|CAX58170.1| Urea amidolyase, Yeast-like [Erwinia billingiae Eb661]
          Length = 1205

 Score = 86.7 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 28/203 (13%), Positives = 66/203 (32%), Gaps = 12/203 (5%)

Query: 70  AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN---RFTMDSQHLISP 126
           A  E   I +             K R++++ ++ GVP+ P   +       + +   +  
Sbjct: 93  AACEEAGIAFVGPTAQQIGEFGLKHRARELAAAAGVPMTPGTPLLASLDEALSAAERVGY 152

Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQLLIEQYVD-GIELTCGV 181
           P ++K   GG  +G+      +++             +     + +E+ +D    +   +
Sbjct: 153 PVMLKSTAGGGGIGLTRCADAEALSNAWESVRRLGEQFFSDAGVFLERCIDRARHVEVQI 212

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241
            GD    V  +            K            ++P      +   A    + +  R
Sbjct: 213 FGDGKGKVIALGERDCSLQRRNQK----VVEETPAPQLPEATRAALLESAVKLGELVNYR 268

Query: 242 GISRSDFLFDPLSRKVFWLEINV 264
                ++++D      F+LE+N 
Sbjct: 269 SAGTVEYIYDAEQDDFFFLEVNT 291


>gi|146277494|ref|YP_001167653.1| acetyl-CoA carboxylase biotin carboxylase subunit [Rhodobacter
           sphaeroides ATCC 17025]
 gi|145555735|gb|ABP70348.1| biotin carboxylase / acetyl-coenzyme A carboxylase carboxyl
           transferase subunit alpha [Rhodobacter sphaeroides ATCC
           17025]
          Length = 448

 Score = 86.3 bits (213), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 77/220 (35%), Gaps = 18/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---- 109
            +H  +G   E+      L+   I +         +  DK+ +K  + + GVP  P    
Sbjct: 77  AVHPGYGFLSENAAFAQALQDHGIEFIGPTADHIRIMGDKITAKDTMKALGVPCVPGSDG 136

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
            +      + +   I  P +IK   GG   G+ V + ++ + +       ++ +    D+
Sbjct: 137 GVPDYETAITTARAIGFPVIIKATAGGGGRGMKVARNEEELEVAFRTARSEAKAAFGNDE 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+Y+     +   V GD       +            K             I  ++ 
Sbjct: 197 VYMEKYLQKPRHIEIQVFGDGKGRAVHLGERDCSLQRRHQKVF----EEAPGPVITPEMR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             + ++   A   I   G    +FL+     + +++E+N 
Sbjct: 253 ARIGKICAEAVGRINYIGAGTIEFLY--EDGEFYFIEMNT 290


>gi|296330515|ref|ZP_06872993.1| acetyl-CoA carboxylase biotin carboxylase subunit [Bacillus
           subtilis subsp. spizizenii ATCC 6633]
 gi|305674564|ref|YP_003866236.1| acetyl-CoA carboxylase biotin carboxylase subunit [Bacillus
           subtilis subsp. spizizenii str. W23]
 gi|6449062|gb|AAF08802.1|AF184956_9 YngH [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|296152197|gb|EFG93068.1| acetyl-CoA carboxylase biotin carboxylase subunit [Bacillus
           subtilis subsp. spizizenii ATCC 6633]
 gi|305412808|gb|ADM37927.1| acetyl-CoA carboxylase biotin carboxylase subunit [Bacillus
           subtilis subsp. spizizenii str. W23]
          Length = 444

 Score = 86.3 bits (213), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 33/221 (14%), Positives = 84/221 (38%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       +   I +        A    K+ +++ + + GVPV P +  
Sbjct: 77  AIHPGYGLLSENSRFAERCKQENIVFIGPAPDIIAKMGSKIEARKAMEAAGVPVVPGVSE 136

Query: 114 NRFTMDSQHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
           +   +         I  P ++K   GG  +G+ +++ ++++         +++ +     
Sbjct: 137 SLGDIQEACRTASQIGYPVMLKASAGGGGIGMQLVQNEEALRKAYEGNKKRAADFFGDGS 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           + IE+ ++    +   ++ D                   ++          P+  +   +
Sbjct: 197 MYIEKVIEHARHIEVQLLADHFGHTI-----HLFERDCSVQRRHQKVIEEAPSPFLDDKL 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             ++ + A  A +AIG       +FL DP ++  ++LE+N 
Sbjct: 252 RMKIGQTAVKAAKAIGYTNAGTIEFLVDP-NQNFYFLEMNT 291


>gi|317967968|ref|ZP_07969358.1| acetyl-CoA carboxylase biotin carboxylase subunit [Synechococcus
           sp. CB0205]
          Length = 450

 Score = 86.3 bits (213), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 72/220 (32%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+     I     + +      +     DK  +K  +   GVP  P    
Sbjct: 78  AIHPGYGFLAENDKFAEICADHGLTFVGPSPDSIRSMGDKSTAKATMQKVGVPTIPGSEG 137

Query: 114 NRFTMDSQHLI----SPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGDQ 165
               +D    +      P +IK   GG   G+ ++     +         ++ +      
Sbjct: 138 LLENVDEARTLAESMGYPVMIKATAGGGGRGMRLVPSADQLDNLFKAAQGEAEAAFGNPG 197

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           L +E+++D    +   V+ D   +V  +            K             I  ++ 
Sbjct: 198 LYMEKFIDRPRHVEVQVLADRHGNVVHVGERDCSIQRRHQKLL----EEAPSVAINAELR 253

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +   A  A + IG  G    +FL D      +++E+N 
Sbjct: 254 RRMGDAAVAAARTIGYEGAGTVEFLVDRTGN-FYFMEMNT 292


>gi|258593391|emb|CBE69730.1| conserved protein of unknown function [NC10 bacterium 'Dutch
           sediment']
          Length = 349

 Score = 86.3 bits (213), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 39/218 (17%), Positives = 77/218 (35%), Gaps = 11/218 (5%)

Query: 50  KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109
           + D  F +     G+   + A++E        S +     + DK  + +++ + G+P   
Sbjct: 83  EADAVFLIAPETGGQLKTITAMVEKCGKLVIGSSVAGVKTAGDKTLTYRLLKAHGIPTPR 142

Query: 110 SILVNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL 167
           ++ +      +     I  P V+KP+ G    G+ V ++   +   +  +        LL
Sbjct: 143 TLRLRPADDSASIGRRIGYPMVVKPIDGVGCHGVFVARQQSELEQAIATARQKASDAILL 202

Query: 168 IEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227
            + Y+DG+  +   + D S  V      +       L+Y         P      +    
Sbjct: 203 AQTYIDGVAASVSFLTDGSRSVPLTLNLQEIRGRKRLRYHGGRIPFDHP------LRTLA 256

Query: 228 QRLAFLAHQAI-GCRGISRSDFLFDPLSRKVFWLEINV 264
            R A    QAI G +G    D +          +E+N 
Sbjct: 257 FRRAEEVVQAIPGLKGYVGIDLVLTDHDA--VVIEVNP 292


>gi|192290820|ref|YP_001991425.1| carbamoyl-phosphate synthase L chain ATP-binding [Rhodopseudomonas
           palustris TIE-1]
 gi|192284569|gb|ACF00950.1| Carbamoyl-phosphate synthase L chain ATP-binding [Rhodopseudomonas
           palustris TIE-1]
          Length = 655

 Score = 86.3 bits (213), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 37/215 (17%), Positives = 76/215 (35%), Gaps = 14/215 (6%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI----LVN 114
           +G   E+    A      + +      + A   +K  +K+++   GVP  P        +
Sbjct: 87  YGFLAENEDFAAACRDAGLVFIGPSAESIAAMGNKAGAKEIMLKAGVPCVPGYQGEDQSD 146

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQLLIEQ 170
              +     I  P +IK + GG   G+ ++K   ++P  L  + S          +++E+
Sbjct: 147 AAMVREAERIGFPIMIKAVAGGGGRGMRLVKDAAALPDALRSARSEAQSAFGDPTVILER 206

Query: 171 YV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
            +     +   V GD       +            K             +   + +++  
Sbjct: 207 AILQPRHIEIQVFGDRYGAAIHLGERDCSVQRRHQK----LIEEAPSPAVSEALREQMGT 262

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +A  A +AIG  G    +FL D      +++E+N 
Sbjct: 263 VAVNAVKAIGYEGAGTLEFLLDAEGN-FYFMEMNT 296


>gi|57235052|ref|YP_180870.1| pyruvate carboxylase subunit A [Dehalococcoides ethenogenes 195]
 gi|57225500|gb|AAW40557.1| acetyl-CoA carboxylase, biotin carboxylase [Dehalococcoides
           ethenogenes 195]
          Length = 498

 Score = 86.3 bits (213), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 42/215 (19%), Positives = 85/215 (39%), Gaps = 15/215 (6%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVN 114
           +G   E+      LE   I +         L  +K+ +++ +   GVPV P     +   
Sbjct: 82  YGFLSENPGFALALEKAGIKFIGPSSRVIELMGNKIAARREMKKAGVPVLPGTEGCVSGI 141

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD----QLLIEQ 170
               ++   I  P +IKP  GG  +G+ V      +   +  S           ++ IE+
Sbjct: 142 EQATEAAAAIGYPVIIKPSGGGGGIGMRVANGPDELKDAIESSQKVAGNTFGLAEVYIEK 201

Query: 171 YV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           Y+ +   +   +MGD+  +V  +   +    S + +Y  L         I  ++ K++  
Sbjct: 202 YISNPRHIEIQIMGDSQGNVVYLGERE---CSIQRRYQKL-IEEAPSPVITPELRKKMGE 257

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +A  A + +   G    +F+F   + + ++LE N 
Sbjct: 258 VAIKAGKWVNYEGAGTIEFIF--SNGQFYFLEANT 290


>gi|330824466|ref|YP_004387769.1| methylcrotonoyl-CoA carboxylase, pyruvate carboxylase
           [Alicycliphilus denitrificans K601]
 gi|329309838|gb|AEB84253.1| Methylcrotonoyl-CoA carboxylase, Pyruvate carboxylase
           [Alicycliphilus denitrificans K601]
          Length = 647

 Score = 86.3 bits (213), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 39/240 (16%), Positives = 87/240 (36%), Gaps = 16/240 (6%)

Query: 34  SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDK 93
           S +D++R +         D      +G   E+    A +    + +        A   DK
Sbjct: 59  SYLDIER-IVAAARETGCDAVHPG-YGFLSENSRFAAAVAAAGLTFVGPKPETIATLGDK 116

Query: 94  MRSKQVVSSCGVPVCPS---ILVNRFTMDSQ-HLISPPYVIKPLKGGSSLGIIVIKKDQS 149
            R+K ++ +  VPV P       +  T+++    +  P ++KP  GG   G+ VI     
Sbjct: 117 ARAKALMEAARVPVVPGGGDASDDPETVEAMVRRVGFPVLLKPSAGGGGKGMRVIADAAE 176

Query: 150 IPLDLLQSSSWNH----GDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYEL 204
           +   +  +           +L++E++++    +   V GD+  +V  +   +        
Sbjct: 177 VREAVASAIRVARSSFGDGRLIVERFIEQPRHIEVQVFGDSHGNVAHLFERECSLQRRHQ 236

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K             +P  +   +   A    +++G       +F+      + ++LE+N 
Sbjct: 237 K----VVEEAPAPNLPEAVRSRLVEAAVRGARSVGYLNAGTFEFIV-ARDFQFYFLEVNT 291


>gi|67901552|ref|XP_681032.1| hypothetical protein AN7763.2 [Aspergillus nidulans FGSC A4]
 gi|40742361|gb|EAA61551.1| hypothetical protein AN7763.2 [Aspergillus nidulans FGSC A4]
          Length = 1057

 Score = 86.3 bits (213), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 91/228 (39%), Gaps = 23/228 (10%)

Query: 54  AFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
           A + +H  +G   E       ++ L +     G  A   + DK+R+KQ+     VPV PS
Sbjct: 119 AIDAIHPGYGFLSESAEFARRMQDLGVIVIGPGWEALDRTGDKLRAKQLAVENNVPVLPS 178

Query: 111 ILVNRFTMDS---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN 161
           +  +  T  +          H +  P +IK + GG   GI ++ +D  +   +  S++ +
Sbjct: 179 LEYDMATPRATGLGKIKSFAHNVGYPVMIKAVDGGGGRGIRLVHRDDDLGHAVRASAAES 238

Query: 162 HGDQLLIEQY-VDGIE-LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI 219
               + +E+  +DG   +   ++GD         V         ++        + P+ I
Sbjct: 239 PSQTVFVEKAAIDGFHHIEIQIVGDGK------DVQHLWERDCSVQRRFQKIVEIAPSLI 292

Query: 220 PL---DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
                ++   +   A    +AI  R +   +FL +    + ++LEIN 
Sbjct: 293 RDRNQELVSRIADAAVRMMKAIRYRSLGTVEFLVNEQLNEFYFLEINP 340


>gi|300022364|ref|YP_003754975.1| acetyl-CoA carboxylase, biotin carboxylase [Hyphomicrobium
           denitrificans ATCC 51888]
 gi|299524185|gb|ADJ22654.1| acetyl-CoA carboxylase, biotin carboxylase [Hyphomicrobium
           denitrificans ATCC 51888]
          Length = 446

 Score = 86.3 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 41/220 (18%), Positives = 82/220 (37%), Gaps = 18/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     ILE  +I +         +  DK+ +K+     G+PV P    
Sbjct: 77  AVHPGYGFLSENARFAEILEEHKITFIGPTSEHIRIMGDKIEAKETAKRLGIPVVPGSNG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
            +      M     +  P +IK   GG   G+ V      +   L     ++ +  + D 
Sbjct: 137 AVTSETEAMKVAKDMGFPVLIKAAAGGGGRGMKVATSAADLGTALATARSEAKAAFNDDA 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+Y+     +   V GD   +   +        S + ++  +      PA +     
Sbjct: 197 VYIEKYLQKPRHIEIQVFGDGKGNAVHLGERD---CSLQRRHQKVLEESPSPA-LNAAQR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +++      A + +  RG    +FLF     + +++E+N 
Sbjct: 253 QKIGNTVADAMRKLKYRGAGTVEFLF--EDGEFYFIEMNT 290


>gi|115524266|ref|YP_781177.1| carbamoyl-phosphate synthase L chain, ATP-binding [Rhodopseudomonas
           palustris BisA53]
 gi|115518213|gb|ABJ06197.1| Carbamoyl-phosphate synthase L chain, ATP-binding protein
           [Rhodopseudomonas palustris BisA53]
          Length = 671

 Score = 86.3 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 36/234 (15%), Positives = 80/234 (34%), Gaps = 15/234 (6%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
            ++         D      +G   E+    A      + +      + A   +K  +K +
Sbjct: 73  EAIISAAKQAGADAVHPG-YGFLAENEAFAASCRDAGLVFIGPSPESIAAMGNKAGAKAI 131

Query: 100 VSSCGVPVCPSI----LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
           +    VP+ P        +   ++    I  P +IK + GG   G+ ++ +  + P  L 
Sbjct: 132 MQKASVPIVPGYQGEDQSDATMLEEAGRIGFPVMIKAVAGGGGRGMRLVNEAAAFPDALR 191

Query: 156 QSSSWNH----GDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLN 210
            + S          +++E+ + +   +   V GD       +            K     
Sbjct: 192 SARSEAQGAFGDPTVILERAIVEPRHIEIQVFGDRYGHAIHLGERDCSVQRRHQK----L 247

Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
                   +   + +++  +A  A +AIG  G    +FL D    + +++E+N 
Sbjct: 248 IEEAPSPAVSEALREKMGTVAVNAVKAIGYEGAGTLEFLLDAQ-GEFYFMEMNT 300


>gi|260886550|ref|ZP_05897813.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Selenomonas
           sputigena ATCC 35185]
 gi|330839612|ref|YP_004414192.1| Biotin carboxylase [Selenomonas sputigena ATCC 35185]
 gi|260863693|gb|EEX78193.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Selenomonas
           sputigena ATCC 35185]
 gi|329747376|gb|AEC00733.1| Biotin carboxylase [Selenomonas sputigena ATCC 35185]
          Length = 468

 Score = 86.3 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 47/259 (18%), Positives = 90/259 (34%), Gaps = 25/259 (9%)

Query: 20  KACASALEDAGFKVSQIDVDRS------VGLVLAHLKPDLAFNVLHGNFG---EDGLVQA 70
            A    L D  ++V   D   S      V       K D     +H  +G   ED     
Sbjct: 38  NALHVQLADLTYRVGPADATESYLNKEAVLEAAIQTKSD----AIHPGYGFLSEDADFAE 93

Query: 71  ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS---ILVNRFTMDSQHLISPP 127
           ++    I +         L  DK  ++  ++  G+P+      +  N   + +   +  P
Sbjct: 94  MVTKAGIVWIGPMPETLRLVGDKDAARAAMAPSGIPMSKGSAPLENNEMALKAAAEVGYP 153

Query: 128 YVIKPLKGGSSLGIIVIKKDQSIP--LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            ++KP+ GG   G+ V   ++ +   L L+      H  +  IE       +   ++ D 
Sbjct: 154 VILKPVSGGGGKGMFVAHSEEDLKNILQLVDLKKVVHYFEHYIEHS---RHIEAQILADN 210

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
              V  +   +        K             +  ++ +E+ RLA  A +++       
Sbjct: 211 YGTVLFLGERECSLQRRNQKLL----EESPSVALTEEMRREIGRLAIKAAKSVHYSNAGT 266

Query: 246 SDFLFDPLSRKVFWLEINV 264
            +FL D    K +++EIN 
Sbjct: 267 VEFLLDLADNKFYFMEINP 285


>gi|86360395|ref|YP_472283.1| putative urea amidolyase protein [Rhizobium etli CFN 42]
 gi|86284497|gb|ABC93556.1| putative urea amidolyase protein [Rhizobium etli CFN 42]
          Length = 1179

 Score = 86.3 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 42/256 (16%), Positives = 94/256 (36%), Gaps = 30/256 (11%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-L 112
            +H  +G   E+      L    I +        +    K  ++++  + GVP+ P   L
Sbjct: 77  AVHPGYGFLSENMGFAERLAAEGIAFIGPRPEHLSAFGLKHTARELARASGVPLLPGTGL 136

Query: 113 VNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQL 166
           ++R    + +   I  P ++K   GG  +G+ +    +S+          + +     ++
Sbjct: 137 LSRADEALAAVERIGYPVMLKSTAGGGGIGMQLCADAESLKASFESVQRTARASFGDARV 196

Query: 167 LIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIY 224
            IE++V +   +   + G+    V  +           L+  +       PA  +     
Sbjct: 197 YIERFVAEARHVEVQIFGNGQGKVIALGE-----RDCSLQRRNQKVVEETPAPGLSAATR 251

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI---FPEMAAYA 281
             + + A     A+        +F++DP   + ++LE+N +       +    P   A  
Sbjct: 252 ARLHKSAIDLGAAVSYESAGTVEFIYDPQREEFYFLEVNTR-------LQVEHPVTEAVF 304

Query: 282 GYSFRELLLWMVEDAS 297
           G    +L+ WM+  A+
Sbjct: 305 GI---DLVEWMIRQAA 317


>gi|320334713|ref|YP_004171424.1| acetyl-CoA carboxylase, biotin carboxylase [Deinococcus
           maricopensis DSM 21211]
 gi|319756002|gb|ADV67759.1| acetyl-CoA carboxylase, biotin carboxylase [Deinococcus
           maricopensis DSM 21211]
          Length = 445

 Score = 86.3 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 35/219 (15%), Positives = 72/219 (32%), Gaps = 17/219 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+     +     I +      +      K   + + +   VP  P   V
Sbjct: 77  AIHPGYGFMAENPDFAEMCREHGIVFIGPTPESMRALGSKAGGRDIAAQSNVPTVPGTGV 136

Query: 114 NRFTMDS---QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL--LQSSSWNH--GDQL 166
                D+      I  P ++K   GG   G  V++    +       Q  +  +     +
Sbjct: 137 LDSVEDALFAAKNIGYPVLLKASAGGGGRGQKVVRTQDELRSAFGQAQEEARLYFGDPAI 196

Query: 167 LIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
           ++E++++    +   VMGD    V  I            K          P+ +P  + +
Sbjct: 197 IMEKFLEEFRHVEVQVMGDGQGHVIHIGERDCSIQRRNQKL-----IEEAPSTLPDTLRQ 251

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           E+        Q +   G    +F+ D      +++E+N 
Sbjct: 252 EILSAGVRLAQHVNYAGAGTLEFIVDT-DGNFYFMEMNT 289


>gi|50552496|ref|XP_503658.1| YALI0E07271p [Yarrowia lipolytica]
 gi|49649527|emb|CAG79240.1| YALI0E07271p [Yarrowia lipolytica]
          Length = 1820

 Score = 86.3 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 32/213 (15%), Positives = 75/213 (35%), Gaps = 12/213 (5%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--- 115
           +G   E+           I +      +      K  ++++  +  VP+ P   +     
Sbjct: 700 YGFLSENADFSDACAEAGIVFIGPTGDSIRKLGLKHSAREIALASDVPLVPGTGLIETVS 759

Query: 116 FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQLLIEQY 171
              ++   +  P +IK   GG  +G+  + K + +         Q  S+   D + +E++
Sbjct: 760 EASEAAEKLEYPLMIKSTAGGGGIGLQKVDKPEDLKRAFETVKHQGKSFFGDDGVFMERF 819

Query: 172 VD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
           V+    +   ++GD   +   I            K              P +    + + 
Sbjct: 820 VENARHVEVQILGDGKGNALAIGERDCSLQRRNQK----VVEETPAPNFPAETRTRMMKA 875

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
           + +  + +  RG    +F+FD    + ++LE+N
Sbjct: 876 SEMLAKNLNYRGAGTVEFIFDEKRNEFYFLEVN 908


>gi|317149912|ref|XP_001823475.2| hypothetical protein AOR_1_1728114 [Aspergillus oryzae RIB40]
          Length = 1086

 Score = 86.3 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 44/217 (20%), Positives = 91/217 (41%), Gaps = 16/217 (7%)

Query: 58  LHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
           +H  +G   E     + +    I     G    + + DK+++KQ+ + C VPV P++  +
Sbjct: 103 VHPGYGFLSESAEFASRMHDAGITVIGPGPETLSCTGDKLKAKQLATQCKVPVLPAMPRS 162

Query: 115 RFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
              +         +  P +IK + GG   GI +++++  +   +  +++ +    + +E+
Sbjct: 163 TSDLKEIRTFARQVGYPIMIKAVDGGGGRGIRLVRQEGELEHAVRAATNESPSQTVFVEK 222

Query: 171 Y-VDGIE-LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEV 227
             VDG   +   V+GD       I V         L+          P+ +   ++ ++V
Sbjct: 223 AAVDGFHHVEVQVVGDG------IDVCHLWERDCSLQRRFQKVVEFAPSLMQNREVVEQV 276

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              A    +AI  R +   +FL     R+ ++LEIN 
Sbjct: 277 LNAALRMAKAIRYRSLGTVEFLVHNHRREFYFLEINP 313


>gi|91780384|ref|YP_555591.1| putative carbamoyl-phosphate synthase/carboxyltransferase
           [Burkholderia xenovorans LB400]
 gi|91693044|gb|ABE36241.1| Putative carbamoyl-phosphate synthase/carboxyltransferase
           [Burkholderia xenovorans LB400]
          Length = 1033

 Score = 86.3 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 46/257 (17%), Positives = 97/257 (37%), Gaps = 27/257 (10%)

Query: 22  CASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIP 78
            A AL   G   + +D+     ++ A ++ + +F   H  +G   E        E   + 
Sbjct: 46  IAVALAGVG-TAAYLDI---ASIIAAAVRTNCSFI--HPGYGFLSESAAFARACEQAGVT 99

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCP---SILVNRFTMDSQHLISPPYVIKPLKG 135
           +         +  DK  ++++     VPV P    +  +   +     ++ P ++K + G
Sbjct: 100 FIGPSPDTLDVFGDKASTRELAIRLDVPVLPATAGLADDASALSFMQSLAAPVIVKAVAG 159

Query: 136 GSSLGIIVIKKDQSIPLDL-----LQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDV 189
           G   G+ ++     +P  L          +   D + +E+Y+     +   V+GD S   
Sbjct: 160 GGGRGMRIVTDPTDLPAALSRCRSEAERGFGRDD-VYVERYLPRSRHIEVQVIGDGS--- 215

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
              +V         L+        + PA  +P++I + +   A    +A+  RG    +F
Sbjct: 216 ---SVVHLGTRDCSLQSRHQKVIEIAPAPWLPVEIEEALLEHALQLARAVQYRGAGTMEF 272

Query: 249 LFDPLS-RKVFWLEINV 264
           L D  +    +++E N 
Sbjct: 273 LIDVDNPSHYYFIEGNP 289


>gi|20455047|sp|Q42777|MCCA_SOYBN RecName: Full=Methylcrotonoyl-CoA carboxylase subunit alpha,
           mitochondrial; Short=MCCase subunit alpha; AltName:
           Full=3-methylcrotonyl-CoA carboxylase 1; AltName:
           Full=3-methylcrotonyl-CoA:carbon dioxide ligase subunit
           alpha; Flags: Precursor
          Length = 731

 Score = 86.3 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 85/221 (38%), Gaps = 18/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E      + E   + +      A     DK  SK+++ + GVP+ P    
Sbjct: 108 AIHPGYGFLSESADFAKLCEESGLTFIGPPASAIRDMGDKSASKRIMGAAGVPLVPGYHG 167

Query: 114 NRFTMDSQHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIP---LDLLQSSSWNHG-DQ 165
               ++   L    I  P +IKP  GG   G+ ++          L   + ++ + G + 
Sbjct: 168 YDQDIEKMKLEADRIGYPVLIKPTHGGGGKGMRIVHTPDEFVESFLAAQREAAASFGVNT 227

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDI 223
           +L+E+Y+     +   + GD   +V  +           ++          PA  I  D 
Sbjct: 228 ILLEKYITRPRHIEVQIFGDKHGNVLHLYE-----RDCSVQRRHQKIIEEAPAPNISADF 282

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             ++   A  A +A+        +F+ D +S + +++E+N 
Sbjct: 283 RAQLGVAAVSAAKAVNYYNAGTVEFIVDTVSDEFYFMEMNT 323


>gi|103486924|ref|YP_616485.1| acetyl-CoA carboxylase, biotin carboxylase [Sphingopyxis alaskensis
           RB2256]
 gi|98977001|gb|ABF53152.1| acetyl-CoA carboxylase, biotin carboxylase [Sphingopyxis alaskensis
           RB2256]
          Length = 454

 Score = 86.3 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 80/220 (36%), Gaps = 18/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     I+E  ++ +            DK+ +K+   + G+PV P    
Sbjct: 78  AIHPGYGFLSENERFAEIIEAHDMIFVGPKPEHIRTMGDKVEAKRTAVALGLPVVPGSPG 137

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSWNHGDQ 165
            +     T      I  P +IK   GG   G+ V+  + S+         ++++      
Sbjct: 138 AVTFGEETKKLAREIGYPVLIKAASGGGGRGMKVVPDEDSLESLMGQASSEAAAAFGDPT 197

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+Y+ +   +   V GD   +   +            K             I  +  
Sbjct: 198 VYMEKYLGNPRHIEFQVFGDGKGNAIHLGERDCSLQRRHQKVL----EEAPSPIISAEER 253

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             + ++   A   +G RG    +FL+   + + F++E+N 
Sbjct: 254 ARMGKVCADAMATMGYRGAGTIEFLW--ENGEFFFIEMNT 291


>gi|325110125|ref|YP_004271193.1| pyruvate carboxylase [Planctomyces brasiliensis DSM 5305]
 gi|324970393|gb|ADY61171.1| pyruvate carboxylase [Planctomyces brasiliensis DSM 5305]
          Length = 1184

 Score = 86.3 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 87/222 (39%), Gaps = 20/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV----CP 109
            +H  +G   E+  +    E   I +    + +     DK  ++Q+    GVPV      
Sbjct: 117 AIHPGYGFLSENPDLARACEKAGIVFVGPSVESLEQLGDKTTARQLAEKAGVPVLSGSGA 176

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS-----SSWNHGD 164
           +++     +     +  P ++K  KGG   G+ V++ +  +      +     +++  GD
Sbjct: 177 ALVSAEEGLKQAEELGYPVILKAAKGGGGRGMRVVRSEDELVPAFESAQHEAKTAFGSGD 236

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLD 222
            + IE++++    +   ++GD   ++T             ++        + PA K+   
Sbjct: 237 -VFIEKFIERARHIEVQILGDQHGNLT-----HLFERDCSVQRRHQKVVEMAPAPKLSDK 290

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             K +   A    + +        +FL D  + +V+++E+N 
Sbjct: 291 ARKTLLESALAIGKVVNYHAAGTVEFLVDAATEEVYFIEVNP 332


>gi|259484115|tpe|CBF80060.1| TPA: pyruvate carboxylase, putative (AFU_orthologue; AFUA_5G07570)
           [Aspergillus nidulans FGSC A4]
          Length = 653

 Score = 86.3 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 91/228 (39%), Gaps = 23/228 (10%)

Query: 54  AFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
           A + +H  +G   E       ++ L +     G  A   + DK+R+KQ+     VPV PS
Sbjct: 77  AIDAIHPGYGFLSESAEFARRMQDLGVIVIGPGWEALDRTGDKLRAKQLAVENNVPVLPS 136

Query: 111 ILVNRFTMDS---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN 161
           +  +  T  +          H +  P +IK + GG   GI ++ +D  +   +  S++ +
Sbjct: 137 LEYDMATPRATGLGKIKSFAHNVGYPVMIKAVDGGGGRGIRLVHRDDDLGHAVRASAAES 196

Query: 162 HGDQLLIEQY-VDGIE-LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI 219
               + +E+  +DG   +   ++GD         V         ++        + P+ I
Sbjct: 197 PSQTVFVEKAAIDGFHHIEIQIVGDGK------DVQHLWERDCSVQRRFQKIVEIAPSLI 250

Query: 220 PL---DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
                ++   +   A    +AI  R +   +FL +    + ++LEIN 
Sbjct: 251 RDRNQELVSRIADAAVRMMKAIRYRSLGTVEFLVNEQLNEFYFLEINP 298


>gi|221126285|ref|XP_002164734.1| PREDICTED: similar to YALI0E07271p [Hydra magnipapillata]
 gi|260221606|emb|CBA30339.1| Urea amidolyase [Curvibacter putative symbiont of Hydra
           magnipapillata]
          Length = 1203

 Score = 86.3 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 33/220 (15%), Positives = 76/220 (34%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+       E   I +             K  ++ +  + GVP+ P    
Sbjct: 77  AIHPGYGFLSENPDFAQACEDAGIAFIGPTPAQMRAFGLKHTARALAEAQGVPLLPGSGL 136

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQL 166
           +   +  +     I  P ++K   GG  +G+ +I+ +  +          + +      L
Sbjct: 137 LADVQQALAEAVRIGYPVMLKSTAGGGGIGMRLIRSEAEMGPAFEAVQRLARANFKDAGL 196

Query: 167 LIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIY 224
            +E++V+    +   + GD    V  +            +  +       PA  +     
Sbjct: 197 FLEKFVERARHIEVQLFGDGQGTVVALGE-----RDCSAQRRNQKVVEETPAPGLSEATR 251

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +Q  A    +A+  R     +++ D  +   ++LE+N 
Sbjct: 252 QALQDTAVRLARAVNYRSAGTVEYVLDADTGAFYFLEVNT 291


>gi|126728955|ref|ZP_01744770.1| pyruvate carboxylase [Sagittula stellata E-37]
 gi|126710885|gb|EBA09936.1| pyruvate carboxylase [Sagittula stellata E-37]
          Length = 1147

 Score = 86.3 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 79/221 (35%), Gaps = 18/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       +   I +            DK  +++V    GVPV P+  V
Sbjct: 80  AIHPGYGLLSENPDFVDACDAAGITFIGPRAETMRALGDKASARRVAIEAGVPVIPATDV 139

Query: 114 NRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-----SSSWNHGD 164
                D+       I  P ++K   GG   G+  I+  + +   +L+      +++ +G+
Sbjct: 140 LGNDFDAIAKEAEEIGYPLMLKASWGGGGRGMRPIEGPKELKDKVLEGRREAEAAFGNGE 199

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
             L +  +    +   ++GD   ++  +           ++  +       PA  +    
Sbjct: 200 GYLEKMIIRARHVEVQILGDKQGNIYHLYE-----RDCSVQRRNQKVVERAPAPYLSEAQ 254

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +E+  L       +        +FL D  +   +++E+N 
Sbjct: 255 REEICELGRKICAHVNYECAGTVEFLMDMDTGAFYFIEVNP 295


>gi|90424366|ref|YP_532736.1| acetyl-CoA carboxylase biotin carboxylase subunit [Rhodopseudomonas
           palustris BisB18]
 gi|90106380|gb|ABD88417.1| biotin carboxylase / acetyl-coenzyme A carboxylase carboxyl
           transferase subunit alpha [Rhodopseudomonas palustris
           BisB18]
          Length = 451

 Score = 86.3 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 78/222 (35%), Gaps = 22/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     IL    + +         L  DK+ +K+     G+PV P    
Sbjct: 77  AVHPGYGFLSENARFAEILAEHNLHFIGPKSEHIRLMGDKIEAKKTARRLGIPVVPGSEG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS-----SSWNHGD 164
            +      M     I  P ++K   GG   G+ V + +  + L L  +     S++    
Sbjct: 137 AVGPEDDAMAIAKAIGFPVLVKAASGGGGRGMKVAQTEADLMLALSTAGNEAKSAFG-DA 195

Query: 165 QLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+Y+     +   V+GD                   L+          P+  +  +
Sbjct: 196 SVYLEKYLQKPRHIEIQVLGDGRGGAI-----HLGERDCSLQRRHQKVWEEGPSPVLSAE 250

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              ++      A Q +   G+   +FL+     + +++E+N 
Sbjct: 251 ARAKIGATCAKAMQDMQYLGVGTIEFLY--EDGEFYFIEMNT 290


>gi|328882613|emb|CCA55852.1| Methylcrotonyl-CoA carboxylase subunit [Streptomyces venezuelae
           ATCC 10712]
          Length = 647

 Score = 86.3 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 41/217 (18%), Positives = 81/217 (37%), Gaps = 14/217 (6%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+           + +      A +L  DK+R+K+ V + GVPV P    
Sbjct: 83  AVHPGYGFLAENAGFAQACADAGLVFIGPPASAISLMGDKIRAKETVQAAGVPVVPGAAD 142

Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK----DQSIPLDLLQSSSWNHGDQLLIE 169
                 +   +  P ++KP  GG   G+ +++        I     ++ S    D LL+E
Sbjct: 143 PELEA-AARELGAPVLLKPSAGGGGKGMRLVRDLSTLSDEIAAARREARSSFGDDTLLVE 201

Query: 170 QYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           +++D    +   V+ DA  +V  +   +        K             +  +I   + 
Sbjct: 202 RWIDRPRHIEIQVLADAHGNVIHLGERECSLQRRHQKII----EEAPSVLLTPEIRAAMG 257

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLS-RKVFWLEINV 264
             A  A ++ G  G    +F+         +++E+N 
Sbjct: 258 SAAVEAARSCGYVGAGTVEFIVPGGDPSSYYFMEMNT 294


>gi|194337659|ref|YP_002019453.1| acetyl-CoA carboxylase, biotin carboxylase [Pelodictyon
           phaeoclathratiforme BU-1]
 gi|194310136|gb|ACF44836.1| acetyl-CoA carboxylase, biotin carboxylase [Pelodictyon
           phaeoclathratiforme BU-1]
          Length = 447

 Score = 86.3 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 78/220 (35%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     + E   I +            DK  +K  + +  VPV P    
Sbjct: 77  AIHPGYGFLAENADFAEVCESANIKFIGPTAKMIKQMGDKNTAKATMIAASVPVVPGSPG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGDQ 165
            +   +  +++      P +IKP  GG   G+ V+ ++  +   L     ++        
Sbjct: 137 LVTDLKQAIETAKKTGYPVIIKPTAGGGGKGMRVVTEESQLDKALNTARSEAEQAFGNSG 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+Y++    +   ++ D   +   +            K             +   + 
Sbjct: 197 VYIEKYLENPRHVEIQILSDQHGNTIHLGERDCTVQRRHQK----LIEETPSPVVDEALR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K++   A  A +AI   G    +FL D   R  +++E+N 
Sbjct: 253 KKMGDAAVAAARAINYEGAGTIEFLLDRH-RDFYFMEMNT 291


>gi|156040880|ref|XP_001587426.1| hypothetical protein SS1G_11418 [Sclerotinia sclerotiorum 1980]
 gi|154695802|gb|EDN95540.1| hypothetical protein SS1G_11418 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 645

 Score = 86.3 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 77/220 (35%), Gaps = 16/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            LH  +G   E+           + +      A     +K RSK ++   GVP  P    
Sbjct: 34  ALHPGYGFLSENSAFAKRCVEEGLVFIGPPWKAIEAMGNKSRSKDIMIKAGVPCIPGYHG 93

Query: 113 ---VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
                   ++    I  P ++K +KGG   G+ + + +      L  + S        D 
Sbjct: 94  ENQEPEHLLNEARKIGFPVMVKAVKGGGGKGMRIAQTEGEFLEKLESAKSEGRNSFGDDV 153

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           +L+E+Y+     +   V  D       +            K             +  DI 
Sbjct: 154 MLVEKYIATPRHIEVQVFADKHGQAVALGERDCSLQRRHQKIL----EEAPAPNLAEDIR 209

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +++   A  A  A+G  G    +F+FD  + + F++E+N 
Sbjct: 210 QDLWEKARAAALAVGYEGAGTVEFIFDNDTNEFFFMEMNT 249


>gi|56420134|ref|YP_147452.1| acetyl-CoA carboxylase biotin carboxylase subunit [Geobacillus
           kaustophilus HTA426]
 gi|56379976|dbj|BAD75884.1| biotin carboxylase [Geobacillus kaustophilus HTA426]
          Length = 450

 Score = 86.3 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 78/220 (35%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       E   I +        A    K+ +++ +   GVP+ P +  
Sbjct: 77  AIHPGYGLLSENPAFARRCEEEGIVFIGPKADVIAAMGSKIEARRTMEQAGVPIVPGVSF 136

Query: 114 ----NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
                     +   I  P ++K   GG  +G+ + + +  +         +++S+     
Sbjct: 137 ALDSADEAAKAAASIGYPVMLKASAGGGGIGMHIARDEAELRQAFEGSQKRAASFFGDGT 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+Y+D    +   ++ D+  +   +   +        K             +  +  
Sbjct: 197 MYIEKYIDRPRHIEIQLLADSYGNCVYLWERECSIQRRHQK----VVEEAPSPFLDEETR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +++   A  A + IG       +FL D      ++LE+N 
Sbjct: 253 RKMGEAAVRAARYIGYANAGTIEFLVDEQKN-FYFLEMNT 291


>gi|307353852|ref|YP_003894903.1| acetyl-CoA carboxylase, biotin carboxylase [Methanoplanus
           petrolearius DSM 11571]
 gi|307157085|gb|ADN36465.1| acetyl-CoA carboxylase, biotin carboxylase [Methanoplanus
           petrolearius DSM 11571]
          Length = 492

 Score = 86.3 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 78/224 (34%), Gaps = 26/224 (11%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       E     +      +      K+ SK ++   GVPV P    
Sbjct: 79  AIHPGYGFLAENSKFAKYCEEEGQTFIGPSWKSIEAMGSKLGSKHMMDKAGVPVLPYTHD 138

Query: 114 NRFTMDSQHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-----SSSWNHGD 164
               +D        I  P ++K   GG  +G+ +++ ++ +   + +      S++    
Sbjct: 139 GVKDIDEAKRVAKDIGYPVIVKASAGGGGIGMQIVENEEELENAIEKGMRIAESAFG-DS 197

Query: 165 QLLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK---IP 220
            + IE+Y V    +   V+ D           +   Y  E      +   V  A    + 
Sbjct: 198 TVFIEKYLVKPRHIEFQVLCDKHG-------NRVHLYDRECSIQRRHQKLVEEAPCPIMT 250

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            ++ + +   A    +A G       +FL+       +++E+N 
Sbjct: 251 DELRERMSESALKVAEASGYYNAGTVEFLYSE--GNYYFMEMNT 292


>gi|161830983|ref|YP_001596735.1| biotin carboxylase [Coxiella burnetii RSA 331]
 gi|161762850|gb|ABX78492.1| biotin carboxylase [Coxiella burnetii RSA 331]
          Length = 661

 Score = 86.3 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 39/222 (17%), Positives = 81/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   ED    A+     + +      A A   DK  +K+++    VPV P    
Sbjct: 77  AIHPGYGFLAEDEKFAALCHQKGLTFIGPPPAAIAAMGDKREAKRLMEKASVPVVPGYQG 136

Query: 114 NRFTM----DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS-----SSWNHGD 164
            +  +    +    I  P +IK   GG   G+ ++     +   L  +     SS++  D
Sbjct: 137 KQQDLKTLTEQAKKIGFPLLIKASAGGGGKGMRLVTIANELEHALQSAKREAKSSFD-DD 195

Query: 165 QLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLD 222
            + +E+Y+     +   +  D   +   +           ++          PA  +   
Sbjct: 196 SVFLEKYINPARHIEVQIFIDQKGNGVYL-----FDRDCSIQRRHQKIIEEAPAPNLSDL 250

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +++   A  A +A+   G    +FL D +    +++E+N 
Sbjct: 251 TRQKMGETAVKAAKAVNYVGAGTVEFLVDKMEN-FYFMEMNT 291


>gi|29654293|ref|NP_819985.1| biotin carboxylase [Coxiella burnetii RSA 493]
 gi|153206746|ref|ZP_01945587.1| biotin carboxylase [Coxiella burnetii 'MSU Goat Q177']
 gi|154705838|ref|YP_001424441.1| methylcrotonyl-CoA carboxylase biotin-containing subunit [Coxiella
           burnetii Dugway 5J108-111]
 gi|165918585|ref|ZP_02218671.1| biotin carboxylase [Coxiella burnetii RSA 334]
 gi|212218455|ref|YP_002305242.1| methylcrotonyl-CoA carboxylase biotin-containing subunit [Coxiella
           burnetii CbuK_Q154]
 gi|29541560|gb|AAO90499.1| methylcrotonyl-CoA carboxylase biotin-containing subunit [Coxiella
           burnetii RSA 493]
 gi|120577109|gb|EAX33733.1| biotin carboxylase [Coxiella burnetii 'MSU Goat Q177']
 gi|154355124|gb|ABS76586.1| methylcrotonyl-CoA carboxylase biotin-containing subunit [Coxiella
           burnetii Dugway 5J108-111]
 gi|165917713|gb|EDR36317.1| biotin carboxylase [Coxiella burnetii RSA 334]
 gi|212012717|gb|ACJ20097.1| methylcrotonyl-CoA carboxylase biotin-containing subunit [Coxiella
           burnetii CbuK_Q154]
          Length = 661

 Score = 86.3 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 39/222 (17%), Positives = 81/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   ED    A+     + +      A A   DK  +K+++    VPV P    
Sbjct: 77  AIHPGYGFLAEDEKFAALCHQKGLTFIGPPPAAIAAMGDKREAKRLMEKASVPVVPGYQG 136

Query: 114 NRFTM----DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS-----SSWNHGD 164
            +  +    +    I  P +IK   GG   G+ ++     +   L  +     SS++  D
Sbjct: 137 KQQDLKTLTEQAKKIGFPLLIKASAGGGGKGMRLVTIANELEHALQSAKREAKSSFD-DD 195

Query: 165 QLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLD 222
            + +E+Y+     +   +  D   +   +           ++          PA  +   
Sbjct: 196 SVFLEKYINPARHIEVQIFIDQKGNGVYL-----FDRDCSIQRRHQKIIEEAPAPNLSDL 250

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +++   A  A +A+   G    +FL D +    +++E+N 
Sbjct: 251 TRQKMGETAVKAAKAVNYVGAGTVEFLVDKMEN-FYFMEMNT 291


>gi|126732548|ref|ZP_01748346.1| acetyl-CoA carboxylase [Sagittula stellata E-37]
 gi|126706994|gb|EBA06062.1| acetyl-CoA carboxylase [Sagittula stellata E-37]
          Length = 449

 Score = 86.3 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 77/220 (35%), Gaps = 18/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+     I+E  ++ +        ++  DK+ +K    + G+P  P    
Sbjct: 77  AIHPGYGFLSENARFVQIVEDHDLTFIGPSAQHISMMGDKITAKDTAKALGIPCVPGSAG 136

Query: 114 NRFTMDSQHLI----SPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGDQ 165
              T+D    I      P +IK   GG   G+ V   +  +         ++ +    D+
Sbjct: 137 GVPTVDDARKIGAEFGYPVIIKATAGGGGRGMKVAADETQMERAYQTARAEAKAAFGNDE 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+Y+     +   V GD       +            K             I  +  
Sbjct: 197 VYIEKYLQRPRHIEIQVFGDGQGGGVHLGERDCSLQRRHQKVF----EEAPGPCITAEER 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             + ++   A   +G RG    +FL+     + +++E+N 
Sbjct: 253 ARIGKICADAISEMGYRGAGTIEFLY--EDGEFYFIEMNT 290


>gi|119509012|ref|ZP_01628163.1| acetyl-CoA carboxylase [Nodularia spumigena CCY9414]
 gi|119466178|gb|EAW47064.1| acetyl-CoA carboxylase [Nodularia spumigena CCY9414]
          Length = 447

 Score = 86.3 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 78/220 (35%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     I     I +      A  L  DK  +K+ +    VP  P    
Sbjct: 78  AIHPGYGFLSENARFAEICADHHIAFIGPTPEAIRLMGDKSTAKETMQKALVPTVPGSDG 137

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS----IPLDLLQSSSWNHGDQ 165
            +   +  +     +  P +IK   GG   G+ +++ +            ++ +      
Sbjct: 138 LVESEQEGLLIAKDMDYPVMIKATAGGGGRGMRLVRSESEFVKLFLAAQGEAGAAFGNSG 197

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E++++    +   ++ D   +V  +            K             +  ++ 
Sbjct: 198 VYVEKFIERPRHIEFQILADNYGNVIHLGERDCSIQRRNQKLL----EEAPSPALDPELR 253

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            ++ + A  A Q I   G    +FL D +S K +++E+N 
Sbjct: 254 DKMGQAAVRAAQFINFTGAGTVEFLLD-MSGKFYFMEMNT 292


>gi|319401503|gb|EFV89713.1| carbamoyl-phosphate synthase pyrimidine-specific large chain
           [Staphylococcus epidermidis FRI909]
          Length = 1057

 Score = 86.3 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 54/315 (17%), Positives = 120/315 (38%), Gaps = 39/315 (12%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQID---------------------VDRSVGLV 45
           G ++E + +   G     AL++ G++V  ++                         +  +
Sbjct: 21  GQAAEFDYA---GTQACLALKEEGYRVILVNSNPATIMTDKEIADKVYIEPLTHDFIARI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   +PD     L G  G +  +Q     +LE   +    + + +   + D+   + +++
Sbjct: 78  IRKEQPDALLPTLGGQTGLNMAIQLHDSGVLEANNVKLLGTELESIQQAEDREMFRTLMN 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
              VPV  S +VN      + +  +  P +++P       G  +   D  +   +     
Sbjct: 138 DLNVPVPESDIVNTVEQAFEFKEQVGYPLIVRPAFTMGGTGGGICHNDAELKEVVSNGLH 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
           ++   Q LIE+ + G  E+   VM D + +   I V   +     +   + +S  V P++
Sbjct: 198 YSPATQCLIEKSIAGYKEIEYEVMRDKNDNA--IVVCNMENID-PVGIHTGDSIVVAPSQ 254

Query: 219 -IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
            +    Y+ ++ ++    +A+G  G        DP S   + +E+N  P ++  S     
Sbjct: 255 TLSDVEYQMLRDVSLKVIRALGIEGGCNVQLALDPHSLNYYIIEVN--PRVSRSS--ALA 310

Query: 278 AAYAGYSFRELLLWM 292
           +   GY   +L   +
Sbjct: 311 SKATGYPIAKLAAKI 325



 Score = 70.5 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 27/196 (13%), Positives = 68/196 (34%), Gaps = 9/196 (4%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           L    +    + +     + D+   + ++    VP          +  + +   I  P V
Sbjct: 646 LAQHGVKILGTSLEDLNRAEDRKEFEALLREIAVPQPQGKTATSPKEALKNAREIGYPVV 705

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           ++P        + ++  DQ +   + Q+   +    +L+++Y+ G E+    + D    V
Sbjct: 706 VRPSYVLGGRAMEIVDNDQELENYMTQAVKASPEHPVLVDRYLTGKEIEVDAISDGETVV 765

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               +   +           +S  V P + +  D    ++       + +  +G+    F
Sbjct: 766 IPGIMEHIERAGVHS----GDSIAVYPPQTLTQDEINTLEDYTIKLAKGLNIKGLINIQF 821

Query: 249 LFDPLSRKVFWLEINV 264
           +       V+ LE+N 
Sbjct: 822 VIAHDG--VYVLEVNP 835


>gi|300932556|ref|ZP_07147812.1| acyl-CoA carboxylase, alpha subunit [Corynebacterium resistens DSM
           45100]
          Length = 706

 Score = 86.3 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 46/220 (20%), Positives = 81/220 (36%), Gaps = 17/220 (7%)

Query: 58  LHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI--- 111
           +H  +G   E+    A  E   I +      A     DK+ ++  V S  VP  P I   
Sbjct: 79  IHPGYGFLSENAEFAARCEKEGITFIGPPASAMEKMGDKITARATVESRDVPTVPGISRP 138

Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQL 166
            L +   + +   I  P +IKP  GG   G+  +++   +P  L  +          D L
Sbjct: 139 GLSDDDIIAAAPDIGFPVLIKPSAGGGGKGMHRVEEIDKLPAALKSARREAASSFGDDTL 198

Query: 167 LIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
            +E +VD    +   ++ D+  +V  +   +        K           A +      
Sbjct: 199 FMEHFVDTPRHIEVQIVADSHGNVVHLGERECSLQRRHQK----VIEEAPSALLDEKTRA 254

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLS-RKVFWLEINV 264
           E+ + A  A +A G  G    +F+       K F++E+N 
Sbjct: 255 EIGQAACDAARACGYLGAGTVEFIVSAKQPEKFFFMEMNT 294


>gi|294665451|ref|ZP_06730737.1| urea amidolyase [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           10535]
 gi|292604786|gb|EFF48151.1| urea amidolyase [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           10535]
          Length = 1215

 Score = 86.3 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 31/214 (14%), Positives = 65/214 (30%), Gaps = 12/214 (5%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
           +G   E+           + +             K  ++ +  + GVP+ P   + +   
Sbjct: 85  YGFLSENTAFAEQCAQAGVVFVGPTPEQVRRFGLKHTARAIAEAAGVPLIPGTGLLQRLD 144

Query: 119 DS---QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS----WNHGDQLLIEQY 171
           D+      I  P ++K   GG  +G+        +             +     + IE++
Sbjct: 145 DAKVAAQRIGYPVMLKSTAGGGGIGLSRCDNAAELATAYDSVQRLGQNFFKDSGVFIERF 204

Query: 172 V-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
           V D   +   + GD    V  +            K             +P  I   +   
Sbjct: 205 VADARHVEVQIFGDGKGRVVALGERDCSLQRRRQK----VVEETPAPHLPHAIRAALLDA 260

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           A    +A+        +F++D      ++LE+N 
Sbjct: 261 AVKLGEAVNYVSAGTVEFIYDAARDAFYFLEVNT 294


>gi|57866726|ref|YP_188352.1| carbamoyl phosphate synthase large subunit [Staphylococcus
           epidermidis RP62A]
 gi|242242485|ref|ZP_04796930.1| carbamoyl phosphate synthase large subunit [Staphylococcus
           epidermidis W23144]
 gi|81819410|sp|Q5HPY8|CARB_STAEQ RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|57637384|gb|AAW54172.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus
           epidermidis RP62A]
 gi|242234059|gb|EES36371.1| carbamoyl phosphate synthase large subunit [Staphylococcus
           epidermidis W23144]
          Length = 1057

 Score = 86.3 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 54/315 (17%), Positives = 120/315 (38%), Gaps = 39/315 (12%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQID---------------------VDRSVGLV 45
           G ++E + +   G     AL++ G++V  ++                         +  +
Sbjct: 21  GQAAEFDYA---GTQACLALKEEGYRVILVNSNPATIMTDKEIADKVYIEPLTHDFIARI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   +PD     L G  G +  +Q     +LE   +    + + +   + D+   + +++
Sbjct: 78  IRKEQPDALLPTLGGQTGLNMAIQLHDSGVLEANNVKLLGTELESIQQAEDREMFRTLMN 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
              VPV  S +VN      + +  +  P +++P       G  +   D  +   +     
Sbjct: 138 DLNVPVPESDIVNTVEQAFEFKEQVGYPLIVRPAFTMGGTGGGICHNDAELKEVVSNGLH 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
           ++   Q LIE+ + G  E+   VM D + +   I V   +     +   + +S  V P++
Sbjct: 198 YSPATQCLIEKSIAGYKEIEYEVMRDKNDNA--IVVCNMENID-PVGIHTGDSIVVAPSQ 254

Query: 219 -IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
            +    Y+ ++ ++    +A+G  G        DP S   + +E+N  P ++  S     
Sbjct: 255 TLSDVEYQMLRDVSLKVIRALGIEGGCNVQLALDPHSLNYYIIEVN--PRVSRSS--ALA 310

Query: 278 AAYAGYSFRELLLWM 292
           +   GY   +L   +
Sbjct: 311 SKATGYPIAKLAAKI 325



 Score = 70.5 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 27/196 (13%), Positives = 68/196 (34%), Gaps = 9/196 (4%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           L    +    + +     + D+   + ++    VP          +  + +   I  P V
Sbjct: 646 LAQHGVKILGTSLEDLNRAEDRKEFEALLREISVPQPQGKTATSPKEALKNAREIGYPVV 705

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           ++P        + ++  DQ +   + Q+   +    +L+++Y+ G E+    + D    V
Sbjct: 706 VRPSYVLGGRAMEIVDNDQELENYMTQAVKASPEHPVLVDRYLTGKEIEVDAISDGETVV 765

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               +   +           +S  V P + +  D    ++       + +  +G+    F
Sbjct: 766 IPGIMEHIERAGVHS----GDSIAVYPPQTLTQDEINTLEDYTIKLAKGLNIKGLINIQF 821

Query: 249 LFDPLSRKVFWLEINV 264
           +       V+ LE+N 
Sbjct: 822 VIAHDG--VYVLEVNP 835


>gi|329297131|ref|ZP_08254467.1| urea carboxylase [Plautia stali symbiont]
          Length = 1205

 Score = 86.3 bits (213), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 31/203 (15%), Positives = 65/203 (32%), Gaps = 12/203 (5%)

Query: 70  AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---QHLISP 126
           A  E   I +             K R++++ +S GVP+ P   +     D+      I  
Sbjct: 93  AACEEAGIAFVGPTAQQIGEFGLKHRARELAASAGVPMTPGTPLLSSLQDALSAAEDIGY 152

Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQLLIEQYVD-GIELTCGV 181
           P ++K   GG  +G+       ++             +     + IE+ +D    +   +
Sbjct: 153 PVMLKSTAGGGGIGLTRCADATALQNAWESVRRLGEQFFSDAGVFIERCIDRARHVEVQI 212

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241
            GD    V  +            K             +P    + +   A    + +  R
Sbjct: 213 FGDGKGKVIALGERDCSLQRRNQK----VVEETPAPNLPQATREALLASAVRLGERVNYR 268

Query: 242 GISRSDFLFDPLSRKVFWLEINV 264
                ++++D      ++LE+N 
Sbjct: 269 SAGTVEYIYDAAQDAFYFLEVNT 291


>gi|251810633|ref|ZP_04825106.1| carbamoyl phosphate synthase large subunit [Staphylococcus
           epidermidis BCM-HMP0060]
 gi|282876365|ref|ZP_06285232.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus
           epidermidis SK135]
 gi|251805793|gb|EES58450.1| carbamoyl phosphate synthase large subunit [Staphylococcus
           epidermidis BCM-HMP0060]
 gi|281295390|gb|EFA87917.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus
           epidermidis SK135]
          Length = 1057

 Score = 86.3 bits (213), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 54/315 (17%), Positives = 120/315 (38%), Gaps = 39/315 (12%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQID---------------------VDRSVGLV 45
           G ++E + +   G     AL++ G++V  ++                         +  +
Sbjct: 21  GQAAEFDYA---GTQACLALKEEGYRVILVNSNPATIMTDKEIADKVYIEPLTHDFIARI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   +PD     L G  G +  +Q     +LE   +    + + +   + D+   + +++
Sbjct: 78  IRKEQPDALLPTLGGQTGLNMAIQLHDSGVLEANNVKLLGTELESIQQAEDREMFRTLMN 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
              VPV  S +VN      + +  +  P +++P       G  +   D  +   +     
Sbjct: 138 DLNVPVPESDIVNTVEQAFEFKEQVGYPLIVRPAFTMGGTGGGICHNDAELKEVVSNGLH 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
           ++   Q LIE+ + G  E+   VM D + +   I V   +     +   + +S  V P++
Sbjct: 198 YSPATQCLIEKSIAGYKEIEYEVMRDKNDNA--IVVCNMENID-PVGIHTGDSIVVAPSQ 254

Query: 219 -IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
            +    Y+ ++ ++    +A+G  G        DP S   + +E+N  P ++  S     
Sbjct: 255 TLSDVEYQMLRDVSLKVIRALGIEGGCNVQLALDPHSLNYYIIEVN--PRVSRSS--ALA 310

Query: 278 AAYAGYSFRELLLWM 292
           +   GY   +L   +
Sbjct: 311 SKATGYPIAKLAAKI 325



 Score = 71.7 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 27/196 (13%), Positives = 69/196 (35%), Gaps = 9/196 (4%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           L    +    + +     + D+   + ++    VP          +  +++   I  P V
Sbjct: 646 LAQHGVKILGTSLEDLNRAEDRKEFEALLREIAVPQPQGKTATSPKEALENAREIGYPVV 705

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           ++P        + ++  DQ +   + Q+   +    +L+++Y+ G E+    + D    V
Sbjct: 706 VRPSYVLGGRAMEIVDNDQELENYMTQAVKASPEHPVLVDRYLTGKEIEVDAISDGETVV 765

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               +   +           +S  V P + +  D    ++       + +  +G+    F
Sbjct: 766 IPGIMEHIERAGVHS----GDSIAVYPPQTLTQDEINTLEDYTIKLAKGLNIKGLINIQF 821

Query: 249 LFDPLSRKVFWLEINV 264
           +       V+ LE+N 
Sbjct: 822 VIAHDG--VYVLEVNP 835


>gi|27467797|ref|NP_764434.1| carbamoyl phosphate synthase large subunit [Staphylococcus
           epidermidis ATCC 12228]
 gi|38257574|sp|Q8CPJ4|CARB_STAES RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|27315341|gb|AAO04476.1|AE016746_266 carbamoyl-phosphate synthase large chain [Staphylococcus
           epidermidis ATCC 12228]
 gi|329729964|gb|EGG66355.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus
           epidermidis VCU144]
 gi|329736345|gb|EGG72617.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus
           epidermidis VCU028]
          Length = 1057

 Score = 86.3 bits (213), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 54/315 (17%), Positives = 120/315 (38%), Gaps = 39/315 (12%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQID---------------------VDRSVGLV 45
           G ++E + +   G     AL++ G++V  ++                         +  +
Sbjct: 21  GQAAEFDYA---GTQACLALKEEGYRVILVNSNPATIMTDKEIADKVYIEPLTHDFIARI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   +PD     L G  G +  +Q     +LE   +    + + +   + D+   + +++
Sbjct: 78  IRKEQPDALLPTLGGQTGLNMAIQLHDSGVLEANNVKLLGTELESIQQAEDREMFRTLMN 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
              VPV  S +VN      + +  +  P +++P       G  +   D  +   +     
Sbjct: 138 DLNVPVPESDIVNTVEQAFEFKEQVGYPLIVRPAFTMGGTGGGICHNDAELKEVVSNGLH 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
           ++   Q LIE+ + G  E+   VM D + +   I V   +     +   + +S  V P++
Sbjct: 198 YSPATQCLIEKSIAGYKEIEYEVMRDKNDNA--IVVCNMENID-PVGIHTGDSIVVAPSQ 254

Query: 219 -IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
            +    Y+ ++ ++    +A+G  G        DP S   + +E+N  P ++  S     
Sbjct: 255 TLSDVEYQMLRDVSLKVIRALGIEGGCNVQLALDPHSLNYYIIEVN--PRVSRSS--ALA 310

Query: 278 AAYAGYSFRELLLWM 292
           +   GY   +L   +
Sbjct: 311 SKATGYPIAKLAAKI 325



 Score = 71.7 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 27/196 (13%), Positives = 69/196 (35%), Gaps = 9/196 (4%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           L    +    + +     + D+   + ++    VP          +  +++   I  P V
Sbjct: 646 LAQHGVKILGTSLEDLNRAEDRKEFEALLREIAVPQPQGKTATSPKEALENAREIGYPVV 705

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           ++P        + ++  DQ +   + Q+   +    +L+++Y+ G E+    + D    V
Sbjct: 706 VRPSYVLGGRAMEIVDNDQELENYMTQAVKASPEHPVLVDRYLTGKEIEVDAISDGETVV 765

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               +   +           +S  V P + +  D    ++       + +  +G+    F
Sbjct: 766 IPGIMEHIERAGVHS----GDSIAVYPPQTLTQDEINTLEDYTIKLAKGLNIKGLINIQF 821

Query: 249 LFDPLSRKVFWLEINV 264
           +       V+ LE+N 
Sbjct: 822 VIAHDG--VYVLEVNP 835


>gi|293366832|ref|ZP_06613508.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus
           epidermidis M23864:W2(grey)]
 gi|291319133|gb|EFE59503.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus
           epidermidis M23864:W2(grey)]
 gi|329736674|gb|EGG72940.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus
           epidermidis VCU045]
          Length = 1057

 Score = 85.9 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 54/315 (17%), Positives = 120/315 (38%), Gaps = 39/315 (12%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQID---------------------VDRSVGLV 45
           G ++E + +   G     AL++ G++V  ++                         +  +
Sbjct: 21  GQAAEFDYA---GTQACLALKEEGYRVILVNSNPATIMTDKEIADKVYIEPLTHDFIARI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   +PD     L G  G +  +Q     +LE   +    + + +   + D+   + +++
Sbjct: 78  IRKEQPDALLPTLGGQTGLNMAIQLHDSGVLEANNVKLLGTELESIQQAEDREMFRTLMN 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
              VPV  S +VN      + +  +  P +++P       G  +   D  +   +     
Sbjct: 138 DLNVPVPESDIVNTVEQAFEFKEQVGYPLIVRPAFTMGGTGGGICHNDAELKEVVSNGLH 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
           ++   Q LIE+ + G  E+   VM D + +   I V   +     +   + +S  V P++
Sbjct: 198 YSPATQCLIEKSIAGYKEIEYEVMRDKNDNA--IVVCNMENID-PVGIHTGDSIVVAPSQ 254

Query: 219 -IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
            +    Y+ ++ ++    +A+G  G        DP S   + +E+N  P ++  S     
Sbjct: 255 TLSDVEYQMLRDVSLKVIRALGIEGGCNVQLALDPHSLNYYIIEVN--PRVSRSS--ALA 310

Query: 278 AAYAGYSFRELLLWM 292
           +   GY   +L   +
Sbjct: 311 SKATGYPIAKLAAKI 325



 Score = 71.7 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 27/196 (13%), Positives = 69/196 (35%), Gaps = 9/196 (4%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           L    +    + +     + D+   + ++    VP          +  +++   I  P V
Sbjct: 646 LAQHGVKILGTSLEDLNRAEDRKEFEALLREIAVPQPQGKTATSPKEALENAREIGYPVV 705

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           ++P        + ++  DQ +   + Q+   +    +L+++Y+ G E+    + D    V
Sbjct: 706 VRPSYVLGGRAMEIVDNDQELENYMTQAVKASPEHPVLVDRYLTGKEIEVDAISDGETVV 765

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               +   +           +S  V P + +  D    ++       + +  +G+    F
Sbjct: 766 IPGIMEHIERAGVHS----GDSIAVYPPQTLTQDEINTLEDYTIKLAKGLNIKGLINIQF 821

Query: 249 LFDPLSRKVFWLEINV 264
           +       V+ LE+N 
Sbjct: 822 VIAHDG--VYVLEVNP 835


>gi|87200095|ref|YP_497352.1| biotin carboxylase / acetyl-coenzyme A carboxylase carboxyl
           transferase subunit alpha [Novosphingobium
           aromaticivorans DSM 12444]
 gi|87135776|gb|ABD26518.1| acetyl-CoA carboxylase carboxyltransferase subunit alpha
           [Novosphingobium aromaticivorans DSM 12444]
          Length = 448

 Score = 85.9 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 74/220 (33%), Gaps = 18/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     I+E   I +            DK+ +K+   + G+P+ P    
Sbjct: 78  AIHPGYGFLSENAKFAEIVEAHGITWVGPKPEHIRTMGDKVEAKRTAGALGLPLVPGSDG 137

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSWNHGDQ 165
            +            I  P +IK   GG   G+ V      +         ++ +      
Sbjct: 138 AVSEIDEAKKIADAIGYPVIIKAASGGGGRGMKVCNSADQLETLMQQAGSEAKAAFGDAT 197

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+Y+ +   +   + GD + +   +            K             I  D  
Sbjct: 198 VYIEKYLGNPRHIEFQIFGDGNGNAIHLGERDCSLQRRHQKVL----EEAPSPVISADER 253

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +  +   A   +G RG    +FL+   + + +++E+N 
Sbjct: 254 ARMGGIVAKAMADMGYRGAGTIEFLW--ENGEFYFIEMNT 291


>gi|20807298|ref|NP_622469.1| carbamoylphosphate synthase large subunit (split gene in MJ)
           [Thermoanaerobacter tengcongensis MB4]
 gi|22095499|sp|Q8RBK0|CARB_THETN RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|20515809|gb|AAM24073.1| Carbamoylphosphate synthase large subunit (split gene in MJ)
           [Thermoanaerobacter tengcongensis MB4]
          Length = 1072

 Score = 85.9 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 54/287 (18%), Positives = 108/287 (37%), Gaps = 35/287 (12%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI---------DVD------------RSVGLV 45
           G ++E + S   G     +L++ G +V  +         D D              V  +
Sbjct: 21  GQAAEFDYS---GTQACKSLKEEGVQVVLVNNNPATIMTDTDIADIVYIENPTVEVVEKI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +A  +PD     L G  G +  V      IL+   +    + + +   + D+   K+ + 
Sbjct: 78  IAKERPDGILATLGGQTGLNLAVKLKEAGILDKYNVKLLGTSVESIKTAEDRELFKRKMQ 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G PV  S+ V      +        P +I+P       G  +   D+ +   +     
Sbjct: 138 EIGEPVAESVTVTNVEDALKFAKNYGYPLIIRPAYTLGGTGGGIAHNDEELISIVDLGLK 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   ++L+E+ + G  E+   VM DA+ +   I     + +     ++  +S  V PA+
Sbjct: 198 KSMVGEVLVEKSLYGWKEIEFEVMRDAADNCITIC--SMENFDPVGVHT-GDSIVVAPAQ 254

Query: 219 -IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +    Y+ ++  +    +A+   G     F  DP S K + +E+N 
Sbjct: 255 TLSDYEYQMLRSASIKIIRALKIEGGCNIQFALDPQSHKYYVIEVNP 301



 Score = 73.2 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 30/215 (13%), Positives = 74/215 (34%), Gaps = 13/215 (6%)

Query: 77  IPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--SILVNRFTMDSQHLISPPYVIKPLK 134
           +    +   +  +S D+ +  +++    +        L      D    +  P +++P  
Sbjct: 651 VKILGTSFKSIDISEDREKFSKLLKELNINQPKGGYALTVEDAKDIALKLGFPLLVRPSY 710

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194
                 +  +   Q +   +  ++  + G  +LI++Y+DG E+    + D    +    +
Sbjct: 711 VIGGQSMEKVNTLQELIDYVKHATEVSPGKPVLIDKYIDGREVEVDAVSDGECVLIPGIM 770

Query: 195 PKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
              +           +S  + PA+ +       +        +A+  +G+    F     
Sbjct: 771 EHIERTGVHS----GDSFSIYPARNLTEREINTIIEYTEKISKALNVKGLINIQFAVKE- 825

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
              V+ LE+N +   T     P M+   G    +L
Sbjct: 826 -GTVYVLEVNPRASRT----VPIMSKATGVPMVKL 855


>gi|300786054|ref|YP_003766345.1| acetyl/propionyl-CoA carboxylase, biotin carboxylase subunit fused
           with biotin carboxyl carrier subunit and
           carboxyltransferase subunit [Amycolatopsis mediterranei
           U32]
 gi|299795568|gb|ADJ45943.1| acetyl/propionyl-CoA carboxylase, biotin carboxylase subunit fused
           with biotin carboxyl carrier subunit and
           carboxyltransferase subunit [Amycolatopsis mediterranei
           U32]
          Length = 1825

 Score = 85.9 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 46/236 (19%), Positives = 85/236 (36%), Gaps = 23/236 (9%)

Query: 42  VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   L   K D A+ V  G   ED     + E + + +      A     DK+ +K +  
Sbjct: 71  LEQALVETKADAAW-VGWGFVAEDPAFAQLCEKVGVTFVGPSADAMRKLGDKIGAKLIAE 129

Query: 102 SCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL-- 155
             GVPV P     +      + +   I  P ++K   GG   GI ++   + +       
Sbjct: 130 EVGVPVAPWSRGEVATLEDALKAGERIGYPLMLKATAGGGGRGIRMVASGEDLAEAYERT 189

Query: 156 --QSSSWNHGDQLLIEQYVDG-IELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSS 208
             ++        + +E+ V G   +   V+ D     +L V + +V + +    E     
Sbjct: 190 SQEALRAFGSGVVFLERLVTGARHVEVQVISDGTTAWALGVRDCSVQRRNQKIIE----- 244

Query: 209 LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
                     +      E++  A     A+G RG    +FL+ P  +   +LE+N 
Sbjct: 245 ----ESASPVLAPPQTAELKTSAERLAVAVGYRGACTVEFLYHPGEKLFAFLEVNT 296


>gi|313234887|emb|CBY24832.1| unnamed protein product [Oikopleura dioica]
          Length = 667

 Score = 85.9 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 78/221 (35%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+     +L    + +      A      K +SK ++   GVP+      
Sbjct: 89  AVHPGYGFLSENAEFADLLAENGVIFIGPSTEAILDMGIKSKSKFIMDDAGVPIIKGYHG 148

Query: 114 NRFT----MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
           ++      +     I  P ++K + GG   G+ +   +      L  +          D+
Sbjct: 149 DQQDDATLLKESKKIGFPVMLKAIMGGGGKGMRICMNEGEFQAQLDSARREALQGFGDDR 208

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           +L+E++V D   +   V GD   D   +           ++          PA  I  D 
Sbjct: 209 MLVEKFVEDPRHVEVQVFGDNYGDAVYLYE-----RDCSVQRRHQKVLEEAPAPGISWDT 263

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +   A  A +A+   G    +F+ D      +++E+N 
Sbjct: 264 RRAIGEAAVRAAKAVNYSGAGTVEFIMDKHEN-FYFMEMNT 303


>gi|108798911|ref|YP_639108.1| pyruvate carboxylase [Mycobacterium sp. MCS]
 gi|119868026|ref|YP_937978.1| pyruvate carboxylase [Mycobacterium sp. KMS]
 gi|108769330|gb|ABG08052.1| pyruvate carboxylase [Mycobacterium sp. MCS]
 gi|119694115|gb|ABL91188.1| pyruvate carboxylase [Mycobacterium sp. KMS]
          Length = 1131

 Score = 85.9 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 41/247 (16%), Positives = 85/247 (34%), Gaps = 18/247 (7%)

Query: 28  DAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87
           + G  V        +  V  H   D  +   +G   E+  + A      I +        
Sbjct: 53  EMGHPVRAYLSVDEIIRVAKHAGADAVYPG-YGFLSENPELAAACAEAGITFIGPRAELL 111

Query: 88  ALSMDKMRSKQVVSSCGVPV----CPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIV 143
            L+ +K R+ +   + G+PV     PS  V+   + +   +  P  +K + GG   G+  
Sbjct: 112 ELTGNKSRAIEAARAAGLPVLRSSAPSSSVDEL-VAAAADMEFPVFVKAVSGGGGRGMRR 170

Query: 144 IKKDQSIPLDLLQS-----SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD 198
           +    ++   +  +     S++      L +  V+   +   ++ D   D+         
Sbjct: 171 VTDPDALAEAIEAASREAESAFGDPMVYLEQAVVNPRHIEVQILADRQGDIM-----HLF 225

Query: 199 FYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
                ++        + PA  +  ++ + +   A    + IG       +FL D   R V
Sbjct: 226 ERDCSVQRRHQKVIELAPAPNLDPELRRRICADAVAFAREIGYSYAGTVEFLLDERGRHV 285

Query: 258 FWLEINV 264
           F  E+N 
Sbjct: 286 FI-EMNP 291


>gi|15430590|dbj|BAB64422.1| vancomycin resistance protein C-2 [Enterococcus casseliflavus]
 gi|15430600|dbj|BAB64427.1| vancomycin resistance protein C-2 [Enterococcus casseliflavus]
          Length = 115

 Score = 85.9 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 29/108 (26%), Positives = 55/108 (50%), Gaps = 4/108 (3%)

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            P   KP + GSS GI  +   + I   L ++ +  +   +L+++ + G+E+ CG++G+ 
Sbjct: 8   FPVFFKPNEAGSSKGITKVTCVEEIAPALKEAFA--YCSAVLLQKNIAGVEIGCGILGND 65

Query: 186 SLDVTEIAVPK--SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           SL V           F+ +E KY  +++   +PA +P  I  +V+  A
Sbjct: 66  SLTVGACDAISLVEGFFDFEEKYQLISAKITVPAPLPETIETKVKEQA 113


>gi|171912641|ref|ZP_02928111.1| Allophanate hydrolase subunit 2 [Verrucomicrobium spinosum DSM
           4136]
          Length = 1204

 Score = 85.9 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 45/256 (17%), Positives = 88/256 (34%), Gaps = 32/256 (12%)

Query: 58  LHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS---I 111
           +H  +G   E+       E   I +             K  ++++    GVP+ P    +
Sbjct: 80  IHPGYGFLSENPEFARACEAAGIAFVGPTPEQMVKFGLKHTAREIAMESGVPLLPGTGLL 139

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQLL 167
                 ++    I  P ++K   GG  +G+ V + D  +          +        L 
Sbjct: 140 ATVDEAVEKAQGIGYPVMLKSTAGGGGIGMRVCENDSDLRAQFESVQRLSMANFKDSGLF 199

Query: 168 IEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYK 225
           +E++V     +   + GD      E  V         ++  +       PA  +  +   
Sbjct: 200 LEKFVRHARHIEVQIFGDG-----EGRVLALGERDCSVQRRNQKVIEETPAPHLSSEGRA 254

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285
           E+   A    +A+  R     +F++D  SRK ++LE+N             +    G + 
Sbjct: 255 ELLACAERLGKAVNYRSAGTVEFVYDADSRKFYFLEVNT-----------RLQVEHGVTE 303

Query: 286 R----ELLLWMVEDAS 297
                +L+ WMV  A+
Sbjct: 304 EVLGIDLVEWMVRLAA 319


>gi|304405832|ref|ZP_07387490.1| urea carboxylase [Paenibacillus curdlanolyticus YK9]
 gi|304345075|gb|EFM10911.1| urea carboxylase [Paenibacillus curdlanolyticus YK9]
          Length = 1217

 Score = 85.9 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 41/256 (16%), Positives = 90/256 (35%), Gaps = 30/256 (11%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+           I +         +   K  ++++    GVP+ P   +
Sbjct: 77  AIHPGYGFLSENAGFARACRERGIAFIGPTPEQMEMFGLKHSARELAEKAGVPMLPGTPL 136

Query: 114 ---NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQL 166
                  + +  +I  P ++K   GG  +G+ V +++Q +          + +      +
Sbjct: 137 ITELEQAVSAASVIGYPVILKSTAGGGGIGMRVCEEEQELRSAFESVRHLAETNFKNGGV 196

Query: 167 LIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
            +E+Y+     +   + G+A  +V  +            K            K    + +
Sbjct: 197 FLEKYIAKARHVEVQIFGNAFGEVVALGERDCSIQRRNQK----VIEESPAPKFAQAVRE 252

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285
            +   A       G R     +FL+DP S + ++LE+N             +    G + 
Sbjct: 253 RMFEAARSLAAEAGYRSAGTVEFLYDPQSSEFYFLEVNT-----------RLQVEHGVTE 301

Query: 286 R----ELLLWMVEDAS 297
                +L+ WMV++A+
Sbjct: 302 EVLGLDLVEWMVKEAA 317


>gi|156405052|ref|XP_001640546.1| predicted protein [Nematostella vectensis]
 gi|156227681|gb|EDO48483.1| predicted protein [Nematostella vectensis]
          Length = 1140

 Score = 85.9 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 74/220 (33%), Gaps = 19/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E            I +         +  DK+ +++V    GVPV P    
Sbjct: 73  AIHPGYGFLSERADFARACTKSGIIFIGPSPQVVHMMGDKLEARKVAVEAGVPVVPGTAE 132

Query: 114 NRFTMDSQHLI----SPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSWNHGDQ 165
                +           P + K   GG   G+ VI     +     L   ++ +      
Sbjct: 133 PIRNAEDARAFCQEHGLPVITKAAYGGGGRGMRVIWNLDDVEKYFTLASNEAYAAFGDGS 192

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           + IE++++    +   VMGD   DV              ++        + PA  +  +I
Sbjct: 193 MFIEKFIEKPRHIEVQVMGDNYGDVV-----HLFERDCSVQRRHQKVIEIAPAPLLDENI 247

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            + +   A    +A+G       +FL D      +++E+N
Sbjct: 248 RQTLTEDAVRLCKAVGYSNAGTVEFLLDQEGNH-YFIEVN 286


>gi|295675037|ref|XP_002798064.1| biotin carboxylase [Paracoccidioides brasiliensis Pb01]
 gi|226280714|gb|EEH36280.1| biotin carboxylase [Paracoccidioides brasiliensis Pb01]
          Length = 666

 Score = 85.9 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 37/203 (18%), Positives = 79/203 (38%), Gaps = 12/203 (5%)

Query: 69  QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD----SQHLI 124
           Q + E         G    A + DK+R+K++  +CGVP+  ++      +D        +
Sbjct: 97  QRMWEEARAKVIGPGWEVLAQTGDKLRAKELAEACGVPILKAMKTPTNDIDLIGRFAAEV 156

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG--IELTCGVM 182
             P ++K + GG   GI  +K    +   + +++  +   ++ +E+   G    +   V+
Sbjct: 157 GYPVMVKAVDGGGGRGIRFVKGADELQSAVDRATGESPSKKVFVEKAAVGSFHHVEVQVI 216

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCR 241
           GD + +V  +           ++          PA +    +  +V   A    + I   
Sbjct: 217 GDGTGEVRHLWE-----RDCSVQRRFQKIVECTPAMMKDRKLVSKVIESALKMAKKIKYL 271

Query: 242 GISRSDFLFDPLSRKVFWLEINV 264
            +   +FL      + F+LE+N 
Sbjct: 272 SLGTFEFLVSETLSEFFFLEVNP 294


>gi|241258727|ref|YP_002978611.1| urea carboxylase [Rhizobium leguminosarum bv. trifolii WSM1325]
 gi|240863197|gb|ACS60860.1| urea carboxylase [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 1179

 Score = 85.9 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 40/256 (15%), Positives = 93/256 (36%), Gaps = 30/256 (11%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      L    I +        +    K  ++++  + GVP+ P   +
Sbjct: 77  AVHPGYGFLSENIGFAERLAAEGIAFIGPRPEHLSAFGLKHTARELAKASGVPLLPGTDL 136

Query: 114 NRFTMDS---QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQL 166
            +   D+     ++  P ++K   GG  +G+ +      +          + +     ++
Sbjct: 137 LQSVEDALSAAEIVGYPVMLKSTAGGGGIGMQLCADAAGLKASFESVQRTARASFGDARV 196

Query: 167 LIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIY 224
            IE++V +   +   + GD    V  +           L+  +       PA  +  +I 
Sbjct: 197 YIERFVAEARHVEVQIFGDGKGGVIALGE-----RDCSLQRRNQKVVEETPAPGLSAEIR 251

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI---FPEMAAYA 281
             + + A     ++        +F++DP   + ++LE+N +       +    P   A  
Sbjct: 252 ARLHKAAVDLGSSVSYESAGTVEFIYDPQREEFYFLEVNTR-------LQVEHPVTEAVF 304

Query: 282 GYSFRELLLWMVEDAS 297
           G    +L+ WM+  A+
Sbjct: 305 GI---DLVEWMIRQAA 317


>gi|154247430|ref|YP_001418388.1| acetyl-CoA carboxylase, biotin carboxylase [Xanthobacter
           autotrophicus Py2]
 gi|154161515|gb|ABS68731.1| acetyl-CoA carboxylase, biotin carboxylase [Xanthobacter
           autotrophicus Py2]
          Length = 452

 Score = 85.9 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 77/221 (34%), Gaps = 20/221 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---- 109
            +H  +G   E+     IL    I +         +  DK+ +K+   S G+PV P    
Sbjct: 77  AVHPGYGFLAENARFAEILADHNIHFIGPKAEHIRIMGDKIEAKKTAQSLGIPVVPGSDG 136

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS-----SSWNHGD 164
            I  +         I  P ++K   GG   G+ V    + +   L  +     S++   D
Sbjct: 137 GIHSDDEAHRVADEIGFPVLVKAAAGGGGRGMKVAMTKEDLSEALSTARNEAKSAFG-DD 195

Query: 165 QLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            + +E+Y+     +   V+GD       +            K             I  + 
Sbjct: 196 AVYLEKYLSTPRHIEVQVLGDGKGHAIHLGERDCSLQRRHQK----VWEEAPSPVITPEQ 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              +      A + +G  G+   +FL+   + + +++E+N 
Sbjct: 252 RARIGETCAKAMRDLGYLGVGTIEFLY--ENGEFYFIEMNT 290


>gi|83945468|ref|ZP_00957815.1| propionyl-CoA carboxylase, alpha subunit [Oceanicaulis alexandrii
           HTCC2633]
 gi|83851044|gb|EAP88902.1| propionyl-CoA carboxylase, alpha subunit [Oceanicaulis alexandrii
           HTCC2633]
          Length = 676

 Score = 85.9 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 44/220 (20%), Positives = 83/220 (37%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  FG   E+      L    I +      A +   DK+ SK++ +  GV   P    
Sbjct: 77  AVHPGFGFLSENAAFPKALAEKNIAWIGPNPHAISAMGDKLESKKLAAEAGVNTVPGFKG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS----IPLDLLQSSSWNHGDQ 165
            I  ++  ++  + I  P +IK   GG   G+ + + D            ++ S    D+
Sbjct: 137 EIEDDQQAVEVANDIGYPVMIKASAGGGGKGMRIARSDDEVREGFKAARNEAKSSFGDDR 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           +LIE++V+    +   V+GD   +V  +   +        K             +     
Sbjct: 197 ILIEKFVEKPRHIEIQVLGDKHGNVVHLNERECSVQRRNQKVL----EEAPSPFLDDATR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K++   A    +A+        +F+ DP  R  ++LE+N 
Sbjct: 253 KKMGDQAVALAKAVDYDSAGTVEFIVDP-DRNFYFLEMNT 291


>gi|126434511|ref|YP_001070202.1| pyruvate carboxylase [Mycobacterium sp. JLS]
 gi|126234311|gb|ABN97711.1| pyruvate carboxylase [Mycobacterium sp. JLS]
          Length = 1128

 Score = 85.9 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 41/247 (16%), Positives = 85/247 (34%), Gaps = 18/247 (7%)

Query: 28  DAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87
           + G  V        +  V  H   D  +   +G   E+  + A      I +        
Sbjct: 53  EMGHPVRAYLSVDEIIRVAKHAGADAVYPG-YGFLSENPELAAACAEAGITFIGPRAELL 111

Query: 88  ALSMDKMRSKQVVSSCGVPV----CPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIV 143
            L+ +K R+ +   + G+PV     PS  V+   + +   +  P  +K + GG   G+  
Sbjct: 112 ELTGNKSRAIEAARAAGLPVLRSSAPSSSVDEL-VAAAADMEFPVFVKAVSGGGGRGMRR 170

Query: 144 IKKDQSIPLDLLQS-----SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD 198
           +    ++   +  +     S++      L +  V+   +   ++ D   D+         
Sbjct: 171 VTDPDALAEAIEAASREAESAFGDPMVYLEQAVVNPRHIEVQILADRQGDIM-----HLF 225

Query: 199 FYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
                ++        + PA  +  ++ + +   A    + IG       +FL D   R V
Sbjct: 226 ERDCSVQRRHQKVIELAPAPNLDPELRRRICADAVAFAREIGYSYAGTVEFLLDERGRHV 285

Query: 258 FWLEINV 264
           F  E+N 
Sbjct: 286 FI-EMNP 291


>gi|315505473|ref|YP_004084360.1| carbamoyl-phosphate synthase l chain ATP-binding protein
           [Micromonospora sp. L5]
 gi|315412092|gb|ADU10209.1| Carbamoyl-phosphate synthase L chain ATP-binding protein
           [Micromonospora sp. L5]
          Length = 1821

 Score = 85.9 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 48/234 (20%), Positives = 88/234 (37%), Gaps = 14/234 (5%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
           +++   L     D A+ V  G   ED     + E + + +      A     DK+ +K +
Sbjct: 69  KALERALVETGADAAW-VGWGFVAEDPAFAELCEKIGVTFVGPSPDAMRKLGDKIGAKLI 127

Query: 100 VSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
               GVPV P     +      + +   I  P ++K   GG   GI VI+ D  +     
Sbjct: 128 AEEVGVPVAPWSRGAVESLDDALRAAASIGYPLMLKATAGGGGRGIRVIRSDAELADAYE 187

Query: 156 ----QSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLN 210
               +++       + +E+ V G   +   V+ D       + V          K    +
Sbjct: 188 RTSQEAARAFGSGVVFLERLVTGARHVEVQVIADGQGTAWALGVRDCSVQRRNQKVIEES 247

Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           ++ V    +  +   E++  A     A+G RG +  +FL+ P  R   +LE+N 
Sbjct: 248 ASPV----LSPEQTAELKASAERLAVAVGYRGAATVEFLYHPGDRLFAFLEVNT 297


>gi|182678321|ref|YP_001832467.1| acetyl-CoA carboxylase, biotin carboxylase [Beijerinckia indica
           subsp. indica ATCC 9039]
 gi|182634204|gb|ACB94978.1| acetyl-CoA carboxylase, biotin carboxylase [Beijerinckia indica
           subsp. indica ATCC 9039]
          Length = 453

 Score = 85.9 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 85/220 (38%), Gaps = 18/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     IL    I +         L  DK+ +K+     G+P  P    
Sbjct: 77  AVHPGYGFLSENARFAEILAEHHIAFIGPKAEHIRLMGDKVEAKRTALRLGIPCVPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGDQ 165
            I      +     +  P +IK   GG   G+ + +  + +PL L    +++ S    D 
Sbjct: 137 AIRDEAEALAVAKTLGFPVLIKAAAGGGGRGMKLARTAEDLPLALSTAKMEALSAFGDDS 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+Y++    +   ++GD       +        S + ++  +      PA +  +  
Sbjct: 197 VYLEKYLEKPRHIEVQILGDGKGKAIHLGERD---CSLQRRHQKVWEETPSPA-LNQEQR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +  +   A + +G  G    +FL+   + + +++E+N 
Sbjct: 253 PRIGEICAQAMRDLGYSGAGTIEFLY--ENGEFYFIEMNT 290


>gi|332671062|ref|YP_004454070.1| carbamoyl-phosphate synthase L chain ATP-binding protein
           [Cellulomonas fimi ATCC 484]
 gi|332340100|gb|AEE46683.1| Carbamoyl-phosphate synthase L chain ATP-binding protein
           [Cellulomonas fimi ATCC 484]
          Length = 717

 Score = 85.9 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 43/219 (19%), Positives = 83/219 (37%), Gaps = 15/219 (6%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+  +        I +   G+ A  +  DK+R+K  VS+ GVPV P   +
Sbjct: 92  AVHPGYGFLSENPDLARACADAGIVFVGPGVRALDVMGDKIRAKDHVSAAGVPVIPGAPL 151

Query: 114 NRFTMDS--QHLISPPYVIKPLKGGSSLGIIVIKK----DQSIPLDLLQSSSWNHGDQLL 167
                 +     +  P ++KP  GG   G+ V+ +    D ++      + +    D LL
Sbjct: 152 TDDEDPAVVAARVGYPLLVKPSAGGGGKGMTVVAEPGALDDALAASRRVARAAFGDDTLL 211

Query: 168 IEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE 226
           +E+YV     +   ++ DA   V  +   +        K            ++       
Sbjct: 212 LERYVRAPRHIEVQLLADAHGGVVHLGERECSLQRRHQK----VVEEAPSPRLDAATRAR 267

Query: 227 VQRLAFLAHQAIGCRGISRSDFLF-DPLSRKVFWLEINV 264
           +   A    +++   G    +FL  D    + F++E+N 
Sbjct: 268 IGAAACDVARSVDYVGAGTVEFLVSDEAPTEFFFMEMNT 306


>gi|270290830|ref|ZP_06197054.1| carbamoyl-phosphate synthase, large subunit [Pediococcus
           acidilactici 7_4]
 gi|270280890|gb|EFA26724.1| carbamoyl-phosphate synthase, large subunit [Pediococcus
           acidilactici 7_4]
          Length = 1057

 Score = 85.9 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 50/286 (17%), Positives = 107/286 (37%), Gaps = 33/286 (11%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI---------DVD------------RSVGLV 45
           G ++E + S   G     +L++ G++   +         D D            + V  +
Sbjct: 21  GQAAEFDYS---GTQACLSLKELGYQTVLVNSNPATIMTDTDVADKVYIEPLTRQFVSQI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   +PD     L G  G +  ++     IL+ L I    + + A   + D+ R + ++ 
Sbjct: 78  IRKERPDAILPTLGGQQGLNMAMELAESGILKELNIELLGTKLDAIDQAEDRERFRSLMK 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G PV  S +       +D       P +++P       G  ++  +  +        +
Sbjct: 138 ELGEPVPDSAIATTVAEAVDFAKQSGFPVIVRPAFTMGGTGGGIVNDETELRKIAANGLT 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   Q+LIEQ + G  E+   VM D + +   I V   + +     ++  +  +     
Sbjct: 198 LSPVTQVLIEQSIAGMKEIEFEVMRDHADNA--IVVCNMENFDPVGIHTGDSIVYAPVQT 255

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +     +E++  A    +A+   G     F  DP+  + + +E+N 
Sbjct: 256 LSDREVQELRDAALRIIRALKIEGGCNVQFALDPVQNRYYVIEVNP 301



 Score = 76.7 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 41/271 (15%), Positives = 91/271 (33%), Gaps = 33/271 (12%)

Query: 23  ASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ---- 69
             A+   G++   +         D   S  L    L  +   NV+     +  +VQ    
Sbjct: 578 IQAIRQMGYEAIVVNNNPETVSTDFSMSDKLYFEPLTVEEVLNVIELEQPKGVIVQFGGQ 637

Query: 70  ---AILELL---EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--FTMDSQ 121
               + E L    +P   + +     + D+    Q+++                  + + 
Sbjct: 638 TAINLAEALADHGVPVLGTAVEDVNRAEDRDEFNQLITENQFRQPEGRTATTVPAAITAA 697

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
           + I  P V++P        + ++     +   +  +   +H   +LI+QY+ G E    V
Sbjct: 698 NQIGYPVVVRPSYVLGGRAMEIVHNQAELENYMHTAVQVSHQHPVLIDQYLVGTECEVDV 757

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGC 240
           + D    V    +   +           +S  V PA+ +   +  ++  +A    + + C
Sbjct: 758 VSDGHDVVIPGIMEHIERSGVHS----GDSMAVYPAQTLSTTVQNQIVEIATKLARCLRC 813

Query: 241 RGISRSDFLFDPLSRKVFWLEIN-----VQP 266
            G+    F+      +V+ +E+N       P
Sbjct: 814 VGLMNVQFIVH--DEQVYVIEVNPRASRTIP 842


>gi|225684834|gb|EEH23118.1| biotin carboxylase [Paracoccidioides brasiliensis Pb03]
          Length = 665

 Score = 85.9 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 36/203 (17%), Positives = 79/203 (38%), Gaps = 12/203 (5%)

Query: 69  QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD----SQHLI 124
           Q + E         G    A + DK+++K++  +CGVP+  ++      +D        +
Sbjct: 97  QRMWEEARAKVIGPGWEVLAQTGDKLQAKELAEACGVPILKAMKTPTNDIDLIGRFAAEV 156

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG--IELTCGVM 182
             P ++K + GG   GI  +K    +   + +++  +   ++ +E+   G    +   V+
Sbjct: 157 GYPVMVKAVDGGGGRGIRFVKGADELQSAVDRATGESPSTKVFVEKAAVGSFHHVEVQVI 216

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCR 241
           GD + +V  +           ++          PA +    +  +V   A    + I   
Sbjct: 217 GDGTGEVRHLWE-----RDCSVQRRFQKIVEYSPAMMKDRKLVSKVIESALKMAKMIKYL 271

Query: 242 GISRSDFLFDPLSRKVFWLEINV 264
            +   +FL      + F+LE+N 
Sbjct: 272 SLGTFEFLVSETLSEFFFLEVNP 294


>gi|2231981|gb|AAB62172.1| vancomycin resistance protein C2 [Enterococcus casseliflavus]
          Length = 119

 Score = 85.9 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 33/117 (28%), Positives = 57/117 (48%), Gaps = 8/117 (6%)

Query: 82  SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIKPLKG 135
            G+ ASAL M+K    Q  ++ GV   P+IL+       Q +         P   KP + 
Sbjct: 1   CGVAASALCMNKWLLHQAAATIGVQSAPTILLTNQDNQQQQIEAFIQTHGFPVFFKPNEA 60

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192
           GSS GI  +   + I   L +  ++ +   +L+++ + G+E+ CG++G+ SL V   
Sbjct: 61  GSSKGITKVTCVEEIAPALKE--AFAYCSAVLLQKNIAGVEIGCGILGNDSLTVGAC 115


>gi|257054978|ref|YP_003132810.1| pyruvate carboxylase [Saccharomonospora viridis DSM 43017]
 gi|256584850|gb|ACU95983.1| pyruvate carboxylase [Saccharomonospora viridis DSM 43017]
          Length = 1127

 Score = 85.9 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 41/247 (16%), Positives = 84/247 (34%), Gaps = 15/247 (6%)

Query: 28  DAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87
           + G  V        +         D  +   +G   E+  +    E   I +        
Sbjct: 53  EPGHPVRAYLSVEEIVNAARRAGADAVYPG-YGFLSENPDLARACEEAGITFIGPSAEVL 111

Query: 88  ALSMDKMRSKQVVSSCGVPVC----PSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIV 143
            L+ +K R+       GVPV     PS  V+   +++   +  P  +K + GG   G+ +
Sbjct: 112 ELTGNKARAVHAAKQAGVPVLGSSEPSADVDTL-VEAAEELGFPLFVKAVAGGGGRGMRL 170

Query: 144 IKKDQSIPLDLLQSSSWNH----GDQLLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSD 198
           ++   S+   +  ++           + +E+  V    +   ++ D +    E  V    
Sbjct: 171 VQDRASLRESIEAAAREAESAFGDPTVFLEKAVVQPRHIEVQILSDGTGR--EDGVIHLY 228

Query: 199 FYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
                ++        + PA  +  ++ + +   A    + IG R     +FL D     V
Sbjct: 229 ERDCSVQRRHQKVIELAPAPNLDPELRERICADAVRFARQIGYRNAGTVEFLVDRDGNHV 288

Query: 258 FWLEINV 264
           F  E+N 
Sbjct: 289 FI-EMNP 294


>gi|163746112|ref|ZP_02153471.1| pyruvate carboxylase [Oceanibulbus indolifex HEL-45]
 gi|161380857|gb|EDQ05267.1| pyruvate carboxylase [Oceanibulbus indolifex HEL-45]
          Length = 1146

 Score = 85.9 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 32/199 (16%), Positives = 72/199 (36%), Gaps = 15/199 (7%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIK 131
            I +            DK  +++V    GVPV P+  V    MD+       +  P ++K
Sbjct: 102 GITFIGPRAETMRALGDKASARRVAMDAGVPVIPATEVLGDDMDAIRAEAAEVGYPLMLK 161

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQ-----SSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186
              GG   G+  I  ++ +   + +      +++ +G+  L +  +    +   ++GD  
Sbjct: 162 ASWGGGGRGMRPIMSEKELAEKVREGRREAEAAFGNGEGYLEKMILRARHVEVQILGDKQ 221

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISR 245
            D+  +           ++  +       PA  +  +   E+  L       +       
Sbjct: 222 GDIYHLYE-----RDCSVQRRNQKVVERAPAPYLTEEQRAEICELGRKICAHVNYECAGT 276

Query: 246 SDFLFDPLSRKVFWLEINV 264
            +FL D    + +++E+N 
Sbjct: 277 VEFLMDMDDGQFYFIEVNP 295


>gi|550452|gb|AAA53140.1| 3-methylcrotonyl-CoA carboxylase, biotin-carrier domain [Glycine
           max]
          Length = 674

 Score = 85.9 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 85/221 (38%), Gaps = 18/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E      + E   + +      A     DK  SK+++ + GVP+ P    
Sbjct: 51  AIHPGYGFLSESADFAKLCEESGLTFIGPPASAIRDMGDKSASKRIMGAAGVPLVPGYHG 110

Query: 114 NRFTMDSQHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIP---LDLLQSSSWNHG-DQ 165
               ++   L    I  P +IKP  GG   G+ ++          L   + ++ + G + 
Sbjct: 111 YDQDIEKMKLEADRIGYPVLIKPTHGGGGKGMRIVHTPDEFVESFLAAQREAAASFGVNT 170

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDI 223
           +L+E+Y+     +   + GD   +V  +           ++          PA  I  D 
Sbjct: 171 ILLEKYITRPRHIEVQIFGDKHGNVLHLYE-----RDCSVQRRHQKIIEEAPAPNISADF 225

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             ++   A  A +A+        +F+ D +S + +++E+N 
Sbjct: 226 RAQLGVAAVSAAKAVNYYNAGTVEFIVDTVSDEFYFMEMNT 266


>gi|332978187|gb|EGK14919.1| pyruvate carboxylase [Desmospora sp. 8437]
          Length = 1148

 Score = 85.9 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 32/221 (14%), Positives = 76/221 (34%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+           I +         +  DK+ ++++    G+PV P    
Sbjct: 80  AIHPGYGFLSENAEFANRCREEGIVFIGPSPEQIQMFGDKVDAREMAVKAGIPVIPGTPE 139

Query: 114 NRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
              ++            P +IK   GG   G+ +++  + +   + ++ S         +
Sbjct: 140 PIDSLAEAIRFGETHGYPMIIKAASGGGGRGMRIVRSPEELEEAVDRARSEAKSAFGNAE 199

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDI 223
           + IE+Y++    +   ++ D   ++  +            K        V P   +P ++
Sbjct: 200 VYIEKYLENPRHIEVQILADEQGNMVHLFERDCSIQRRHQK-----VVEVAPSVSLPEEL 254

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              +   A       G       +FL  P   + +++E+N 
Sbjct: 255 RNRICEAALQLMTTAGYTNAGTVEFLVTP-DHRFYFIEVNP 294


>gi|297566436|ref|YP_003685408.1| acetyl-CoA carboxylase, biotin carboxylase [Meiothermus silvanus
           DSM 9946]
 gi|296850885|gb|ADH63900.1| acetyl-CoA carboxylase, biotin carboxylase [Meiothermus silvanus
           DSM 9946]
          Length = 446

 Score = 85.9 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 34/219 (15%), Positives = 75/219 (34%), Gaps = 18/219 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+     + +   I +            DK   ++V    GVP  P    
Sbjct: 77  AIHPGYGFLAENAQFAEMCKDYGIIFIGPTPENMRALGDKATGRRVAREAGVPTTPGTDE 136

Query: 114 NRF---TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGDQL 166
                    +   I  P ++K   GG   G+ ++  +  +   +     ++ +      +
Sbjct: 137 LEDVETAKKAAAEIGYPVILKATAGGGGRGMRLVSDESELERAVQQAQEEARAAFGNPTV 196

Query: 167 LIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
            +E+Y+ +   +   V+GD   +V  +            K          P+ +P ++ +
Sbjct: 197 YLEKYIQEPKHIEIQVLGDGE-NVIHLWERDCSIQRRHQKLL-----EEAPSILPFEVRQ 250

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +   A    + IG       +FL D      +++E+N 
Sbjct: 251 SIAEAAVRLAKHIGYVSAGTLEFLVDREGN-FYFMEMNT 288


>gi|261419844|ref|YP_003253526.1| acetyl-CoA carboxylase biotin carboxylase subunit [Geobacillus sp.
           Y412MC61]
 gi|319766658|ref|YP_004132159.1| carbamoyl-phosphate synthase L chain ATP-binding protein
           [Geobacillus sp. Y412MC52]
 gi|261376301|gb|ACX79044.1| Carbamoyl-phosphate synthase L chain ATP-binding protein
           [Geobacillus sp. Y412MC61]
 gi|317111524|gb|ADU94016.1| Carbamoyl-phosphate synthase L chain ATP-binding protein
           [Geobacillus sp. Y412MC52]
          Length = 450

 Score = 85.9 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 33/220 (15%), Positives = 78/220 (35%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       E   I +        A    K+ +++ +   GVP+ P +  
Sbjct: 77  AIHPGYGLLSENPAFARRCEEEGIVFIGPKADVIAAMGSKIEARRTMEKAGVPIVPGVSF 136

Query: 114 ----NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
                     +   I  P ++K   GG  +G+ + + +  +         +++S+     
Sbjct: 137 ALDGADEAAKAAASIGYPVMLKASAGGGGIGMHIARDEAELRQAFEGSQKRAASFFGDGT 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+Y++    +   ++ D + +   +   +        K             +  +  
Sbjct: 197 MYIEKYIERPRHIEIQLLADQNGNCVYLWERECSIQRRHQK----VVEEAPSPFLDEETR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +++   A  A + IG       +FL D      ++LE+N 
Sbjct: 253 RKMGEAAVRAARYIGYANAGTIEFLVDEQKN-FYFLEMNT 291


>gi|15679899|ref|NP_277017.1| pyruvate carboxylase subunit A [Methanothermobacter
           thermautotrophicus str. Delta H]
 gi|6685809|sp|O27939|PYCA_METTH RecName: Full=Pyruvate carboxylase subunit A; AltName: Full=Pyruvic
           carboxylase A
 gi|2623051|gb|AAB86377.1| biotin carboxylase [Methanothermobacter thermautotrophicus str.
           Delta H]
          Length = 491

 Score = 85.9 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 42/228 (18%), Positives = 82/228 (35%), Gaps = 23/228 (10%)

Query: 47  AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP 106
             + P   F   +   GE+       E   I              DK+ SK+++   GVP
Sbjct: 76  EAIHPGYGFLAENPRLGEE------CEKQGIKLIGPKGSVIEAMGDKITSKKLMKKAGVP 129

Query: 107 VCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQS 157
           V P     +            I  P +IK   GG  +G+  + ++  +   +     + +
Sbjct: 130 VIPGTDQGVSDPDEAARIADSIGYPVIIKASAGGGGIGMRAVYEEDELIRAMESTQSVAA 189

Query: 158 SSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216
           S++     + IE+Y++    +   VM D S +V  +A  +        K           
Sbjct: 190 SAFG-DPTVYIEKYLERPRHIEFQVMADESGNVIHLADRECSIQRRHQK----LIEEAPS 244

Query: 217 AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +  ++ + +   A  A + IG       +FL+   +   ++LE+N 
Sbjct: 245 PIMTPELRERMGSAAVKAAEYIGYENAGTVEFLY--SNGDFYFLEMNT 290


>gi|149204195|ref|ZP_01881163.1| pyruvate carboxylase [Roseovarius sp. TM1035]
 gi|149142637|gb|EDM30682.1| pyruvate carboxylase [Roseovarius sp. TM1035]
          Length = 1167

 Score = 85.9 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 34/221 (15%), Positives = 82/221 (37%), Gaps = 18/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       +  +I +            DK  +++V    GVPV P+  V
Sbjct: 101 AIHPGYGLLSENPAFVDACDAADITFIGPRAETMRALGDKASARRVAMEAGVPVIPATEV 160

Query: 114 NRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-----SSSWNHGD 164
               + +       I  P ++K   GG   G+  I+ +  +   + +      +++ +G+
Sbjct: 161 LGDDIKAIRKEAKAIGYPLMLKASWGGGGRGMRPIEDESELEDKVREGRREAEAAFGNGE 220

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
             L +  +    +   ++GD   ++              ++  +       PA  +    
Sbjct: 221 GYLEKMILRARHVEVQILGDKHGNMY-----HLFERDCSVQRRNQKVVERAPAPYLSETQ 275

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +E+ +L +   + +        +FL D  + K +++E+N 
Sbjct: 276 REEICQLGYKICKHVNYECAGTVEFLMDMDTGKFYFIEVNP 316


>gi|145601444|ref|XP_366100.2| hypothetical protein MGG_10320 [Magnaporthe oryzae 70-15]
 gi|145009511|gb|EDJ94178.1| hypothetical protein MGG_10320 [Magnaporthe oryzae 70-15]
          Length = 739

 Score = 85.9 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 47/236 (19%), Positives = 84/236 (35%), Gaps = 26/236 (11%)

Query: 35  QIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKM 94
            +D DR   L    L P +A +  +G   E+     +     + +      A A   DK 
Sbjct: 109 YLDGDRISRLAADKLGPGVALHPGYGFLSENAAFARLCADRGVNFVGPPASAMADMGDKA 168

Query: 95  RSKQVVSSCGVPVCPSILVNR----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150
           RSK ++S+ GVP  P          F  +    I  P ++K      SL     +   S 
Sbjct: 169 RSKHIMSAAGVPCVPGYHGEEQSAAFLAEKAAEIEYPVLLK------SLRSARAEARASF 222

Query: 151 PLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209
             D         G+ +L+E+Y+     +   V  D       +            K    
Sbjct: 223 GPD---------GEIMLVEKYITRPRHVEVQVFADRHGGCVALGERDCSIQRRHQK---- 269

Query: 210 NSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
                 PA  +  ++ +++   A  A  A+G  G    +F+ D  + + +++E+N 
Sbjct: 270 -VIEESPAPGLSEELRQDLWAKARTAALAVGYVGAGTVEFILDRDTDRFYFMEMNT 324


>gi|115400331|ref|XP_001215754.1| hypothetical protein ATEG_06576 [Aspergillus terreus NIH2624]
 gi|114191420|gb|EAU33120.1| hypothetical protein ATEG_06576 [Aspergillus terreus NIH2624]
          Length = 720

 Score = 85.9 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 54/287 (18%), Positives = 96/287 (33%), Gaps = 44/287 (15%)

Query: 13  EVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNV--------------- 57
           E++L  G+  A      G +V+ +  D       A   P  AFN+               
Sbjct: 49  EIALRVGRTAAQH----GIRVTTLYTDPDSRAQHALSSP-FAFNLGSVSAYLDGDRIIEI 103

Query: 58  --------LHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP 106
                   +H  +G   E+           + +      A     DK +SK ++++ GVP
Sbjct: 104 AKREGCQGIHPGYGFLSENSAFARKCTEAGLVFIGPPWKAIEDMGDKSQSKHIMTAAGVP 163

Query: 107 VCPSILVNRFT----MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
             P                  I  P +IK +KGG   G+ + +  +     L  + S   
Sbjct: 164 CVPGYHGENQDPHFLEAEADKIKYPVLIKAIKGGGGKGMRIAQSKEEFQAQLQSAKSEAM 223

Query: 163 ----GDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
                D +L+E+Y+     +   V  D   +   +            K            
Sbjct: 224 NSFGDDHVLVEKYITTPRHIEVQVFADKHGNCVALGERDCSIQRRHQKIL----EESPAP 279

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +P    K++   A  A  A+G  G    +F+FD  + + F++E+N 
Sbjct: 280 HLPDATRKDLWAKARAAALAVGYEGAGTVEFIFDNDTGEFFFMEMNT 326


>gi|167752764|ref|ZP_02424891.1| hypothetical protein ALIPUT_01025 [Alistipes putredinis DSM 17216]
 gi|167659833|gb|EDS03963.1| hypothetical protein ALIPUT_01025 [Alistipes putredinis DSM 17216]
          Length = 1060

 Score = 85.9 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 37/228 (16%), Positives = 85/228 (37%), Gaps = 18/228 (7%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYV 129
           L  L +P   +G+ A   + D+   ++++   G+P   +  V        +   I  P +
Sbjct: 643 LHELGVPIIGTGVEAIRNAEDRGCFEKIMEELGIPQPEAEAVTDIEAGVRAAERIGYPVL 702

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS--- 186
           ++P        + ++  ++ +   L  +   N    +L+++Y+ G EL    + D     
Sbjct: 703 VRPSYVLGGRAMQIVSNEERLRHYLQTAVEVNEDSPVLVDRYIMGRELEVDAICDGKDVF 762

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISR 245
           +      V K+  +S        +S  V P   +      ++        + IG  G+  
Sbjct: 763 IPGIMEHVEKTGIHS-------GDSISVYPTFSVSQKAKDKIIDYTVRLGRRIGIVGLYN 815

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
             F+ D     V+ +E+N +   T     P ++   G    ++   ++
Sbjct: 816 IQFILDGEED-VYVIEVNPRSSRT----VPFLSKATGVPMADIATRVI 858



 Score = 74.8 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 53/269 (19%), Positives = 107/269 (39%), Gaps = 32/269 (11%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL++ G++V  +         DV               V  ++ + +PD     L G  G
Sbjct: 36  ALKEEGYEVVLVNSNPATIQTDVQIADKVYMEPLTLEYVAKIVRYERPDAIVPGLGGQTG 95

Query: 64  EDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFT 117
            +  VQ     +L+  ++    +   +   + D+   K++  S G PV PS++ N     
Sbjct: 96  LNLAVQLAKKGVLQECQVEILGTSFQSIEQAEDRELFKELCQSLGEPVLPSLIANNIDEA 155

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IE 176
           +++   I  P V++P       G      +  +   +  + S +   Q+LIE+ + G  E
Sbjct: 156 VEAAKRIGYPVVLRPAFTLGGTGGGFADDETQLREMMRNALSLSPVHQVLIEKSIKGYKE 215

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAH 235
           +   V+ D +     I   ++      +   + +S  V P++ +    Y+ ++  A    
Sbjct: 216 IEYEVIRDHNDTAIAICNMEN---IDPVGVHTGDSIVVAPSQTLTNKEYQLLRDSALRLI 272

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +A+   G     F  DPLS   + +E+N 
Sbjct: 273 RALKIEGGCNVQFALDPLSFNYYLIEVNP 301


>gi|291545236|emb|CBL18345.1| acetyl-CoA carboxylase, biotin carboxylase [Ruminococcus sp. 18P13]
          Length = 452

 Score = 85.9 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 78/220 (35%), Gaps = 18/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  FG   ED           + +      A  L  DK R+KQ + + GVPV P    
Sbjct: 77  AVHPGFGFLSEDADFARQCREAGLIFVGPSPEAITLLGDKARAKQTMQAAGVPVIPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGD 164
            +       +    I  P +IK   GG   GI  + +++ +   +       +S +   D
Sbjct: 137 IVADLASAKEIAAKIGYPLLIKASAGGGGRGIRPVYREEELESQMRTASEEAASCFGCAD 196

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             +    +    +   ++ D+  +V  +          + K           A +   + 
Sbjct: 197 VYMERLLLHPRHVEVQILADSQGNVVHLGERDCSMQRRKQK----LMEESPCAILSPALR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +++   A  A +  G       +FL D   ++ F++E+N 
Sbjct: 253 QQMGDAAVRAAKQCGFTNAGTVEFLTD--GKEFFFMEMNT 290


>gi|308173451|ref|YP_003920156.1| pyruvate carboxylase [Bacillus amyloliquefaciens DSM 7]
 gi|307606315|emb|CBI42686.1| pyruvate carboxylase [Bacillus amyloliquefaciens DSM 7]
 gi|328553620|gb|AEB24112.1| pyruvate carboxylase [Bacillus amyloliquefaciens TA208]
 gi|328911585|gb|AEB63181.1| pyruvate carboxylase [Bacillus amyloliquefaciens LL3]
          Length = 1148

 Score = 85.9 bits (212), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 32/221 (14%), Positives = 80/221 (36%), Gaps = 20/221 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+       E   I +         +  DK+++++     G+PV P    
Sbjct: 82  AIHPGYGFLSENIQFARRCEEEGIVFIGPTSAHLDMFGDKVKAREQAEKAGIPVIPGSDG 141

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGDQ 165
                +       +   P++IK   GG   G+ +++ +  +         ++ +    D+
Sbjct: 142 PAETLKDVEQFAKVHGFPFIIKASLGGGGRGMRIVRNENELKDSFERAKSEAKAAFGNDE 201

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDI 223
           + +E+ ++    +   V+GD   +V  +           ++        V P   +  ++
Sbjct: 202 VYVEKLIENPKHIEVQVIGDKEGNVVHLYE-----RDCSVQRRHQKVIEVAPSVSLQPEL 256

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             E+   A    + +G       +FL      + +++E+N 
Sbjct: 257 RDEICEAAVALAKNVGYINAGTVEFLV--ADGEFYFIEVNP 295


>gi|149370134|ref|ZP_01889985.1| acetyl-CoA carboxylase, biotin carboxylase [unidentified
           eubacterium SCB49]
 gi|149356625|gb|EDM45181.1| acetyl-CoA carboxylase, biotin carboxylase [unidentified
           eubacterium SCB49]
          Length = 491

 Score = 85.9 bits (212), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 81/220 (36%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+ +   +     I +      +  +  +K+ +K+ V+S  +P+ P    
Sbjct: 76  AIHPGYGFLSENAVFAKMATAAGITFIGPKPQSIEVMGNKLAAKEAVNSYNIPMVPGIEE 135

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL----DLLQSSSWNHGDQ 165
            I   +        I  P +IK   GG   G+ V++  Q +P      + ++ +      
Sbjct: 136 AITDIKLAEKISKEIGFPILIKASAGGGGKGMRVVENLQELPEQMERAISEAKAAFGDGS 195

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+YV     +   V+ D   ++  +   +        K           A +  +I 
Sbjct: 196 VFIEKYVGSPRHIEIQVLADTHGNIIHLFERECSIQRRHQK----VVEEAPSAVLTPEIR 251

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +   A    +A    G    +FL D      ++LE+N 
Sbjct: 252 EAMGDAAIKVAKACDYVGAGTVEFLLDENKN-FYFLEMNT 290


>gi|83415050|dbj|BAE53784.1| D-alanine:D-alanine ligase [Streptococcus cristatus]
          Length = 96

 Score = 85.9 bits (212), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 28/96 (29%), Positives = 50/96 (52%), Gaps = 2/96 (2%)

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNST 212
               ++ +  ++LIEQ V+  E+  G++G+  +  T     V    FY YE KY     T
Sbjct: 1   ALDLAFKYDSRVLIEQGVNAREIEVGLLGNYDVRSTLPGEVVIDVAFYDYEAKYIDNKIT 60

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
             +P KI  ++   ++  A +A +A+G +G++R DF
Sbjct: 61  MDIPVKISGEVISIMRTNAEIAFRALGGQGLARCDF 96


>gi|256389396|ref|YP_003110960.1| carbamoyl-phosphate synthase L chain ATP- binding [Catenulispora
           acidiphila DSM 44928]
 gi|256355622|gb|ACU69119.1| Carbamoyl-phosphate synthase L chain ATP- binding [Catenulispora
           acidiphila DSM 44928]
          Length = 662

 Score = 85.9 bits (212), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 46/274 (16%), Positives = 87/274 (31%), Gaps = 38/274 (13%)

Query: 1   MAVLMGG-ISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLH 59
           +AV +GG  S+E   S         A    G                    P   F   +
Sbjct: 52  VAVALGGSTSAE---SYLDAAKILDAARKTGADAV---------------HPGYGFLSEN 93

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
             F E            I +      A      K  +K +  + GVPV P  L+     D
Sbjct: 94  AGFAE------ACAQAGIVFVGPSPDAIRKMGIKHEAKAIAKAAGVPVLPDALLTTDEPD 147

Query: 120 ----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGDQLLIEQY 171
               S   +  P ++K   GG   G+ ++   + +   +     ++++      + +E+Y
Sbjct: 148 DWRRSSEGVGFPLLVKASAGGGGKGMRLVSSVEELENAVSGARREAAAAFGDGTVFLERY 207

Query: 172 VDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
           +     +   V GD   +       +        K           + +   +  ++  +
Sbjct: 208 LAASRHIEIQVFGDTHGNAVFYGERECSVQRRHQK----VVEEAPSSAVGAAVRAKMGEV 263

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           A    + +G  G    +FLFD      ++LE+N 
Sbjct: 264 ACALVRELGYVGAGTVEFLFDDTDDSYYFLEMNT 297


>gi|295398280|ref|ZP_06808322.1| carbamoyl-phosphate synthase, large subunit [Aerococcus viridans
           ATCC 11563]
 gi|294973419|gb|EFG49204.1| carbamoyl-phosphate synthase, large subunit [Aerococcus viridans
           ATCC 11563]
          Length = 1064

 Score = 85.9 bits (212), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 34/228 (14%), Positives = 81/228 (35%), Gaps = 19/228 (8%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           L  L IP   + +     + D+   +Q ++  G+P             +     I  P +
Sbjct: 646 LHALGIPILGTTVEDLDRAEDRDLFEQALTDLGIPQPEGFTAMSVEDALQIPSKIGYPVL 705

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS--- 186
           ++P       G+ ++  D  +   +  +   +    +LI+ YV G E+    + D     
Sbjct: 706 VRPSYVLGGRGMEIVDNDADLRSYMEDAMIASPDRPILIDHYVVGTEVEVDAICDGENVL 765

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISR 245
           +      + +S  +S        +S  V P++ +  ++   +          + C G+  
Sbjct: 766 IPGIMEHIERSGVHS-------GDSMAVYPSQSLSDEVKATIVDYTERLSFGLNCLGMMN 818

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
             F+      +V+ +E+N +   T     P ++   G    ++    +
Sbjct: 819 IQFIV--QDGQVYVIEVNPRASRT----VPFLSKVTGIPMAQVATRAI 860



 Score = 72.1 bits (176), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 44/273 (16%), Positives = 97/273 (35%), Gaps = 31/273 (11%)

Query: 20  KACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVL 58
           +AC S L + G++V  ++ +                       V  +L   +PD     L
Sbjct: 32  QACLS-LREEGYEVVLVNSNPATIMTDTEIADKVYIEPITLEFVSRILRKERPDAILPTL 90

Query: 59  HGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
            G  G +  ++     IL+ L I    + + A   + D+   + ++     PV  S +V+
Sbjct: 91  GGQTGLNMAIELANDGILDELGIQLLGTKLSAIDQAEDRDLFRNLMRELNEPVPESDIVH 150

Query: 115 --RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                +        P +++P       G  +      +   + +    +  +Q LIE  +
Sbjct: 151 TVDEALAFAEQAGYPVIVRPAFTMGGTGGGICNDPAELREIVAKGLKLSPVNQCLIEISI 210

Query: 173 DG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
            G  E+   VM D++ +   + V   + +     ++  +        +     + ++  +
Sbjct: 211 AGYKEIEYEVMRDSADNA--LVVCNMENFDPVGIHTGDSIVFAPTLTLTDYENQILRDAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
               +A+G  G        DP S   + +E+N 
Sbjct: 269 LKIIRALGIEGGCNVQLALDPNSFNYYVIEVNP 301


>gi|255567518|ref|XP_002524738.1| acetyl-CoA carboxylase, putative [Ricinus communis]
 gi|223535922|gb|EEF37581.1| acetyl-CoA carboxylase, putative [Ricinus communis]
          Length = 742

 Score = 85.9 bits (212), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 84/222 (37%), Gaps = 20/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E      + +   + +      A     DK  SK+++ + GVP+ P    
Sbjct: 116 AIHPGYGFLSESAEFATLCQDKGLTFIGPPASAIQDMGDKSASKRIMGAAGVPLVPGYHG 175

Query: 114 NRFTMDSQHL----ISPPYVIKPLKGGSSLGIIVIKKDQSI-----PLDLLQSSSWNHGD 164
               ++   L    I  P +IKP  GG   G+ +++                ++S+    
Sbjct: 176 IEQDIEQMKLEADKIGYPVLIKPTHGGGGKGMRIVQSPNEFVDSFFGAQREAAASFGINT 235

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLD 222
            +L+E+Y+     +   V GD   ++  +           ++          PA  I  +
Sbjct: 236 -ILLEKYITQPRHIEVQVFGDKYGNILHLYE-----RDCSVQRRHQKIIEEAPAPNIMDE 289

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
               + + A  A +A+G       +F+ D +S K +++E+N 
Sbjct: 290 FRSHLGQAAVSAAKAVGYYNAGTVEFIVDIVSGKFYFMEMNT 331


>gi|254478598|ref|ZP_05091971.1| carbamoyl-phosphate synthase, large subunit [Carboxydibrachium
           pacificum DSM 12653]
 gi|214035452|gb|EEB76153.1| carbamoyl-phosphate synthase, large subunit [Carboxydibrachium
           pacificum DSM 12653]
          Length = 1072

 Score = 85.9 bits (212), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 55/287 (19%), Positives = 108/287 (37%), Gaps = 35/287 (12%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI---------DVD------------RSVGLV 45
           G ++E + S   G     +L++ G +V  +         D D              V  +
Sbjct: 21  GQAAEFDYS---GTQACKSLKEEGVQVVLVNNNPATIMTDTDIADIVYIENPTVEVVEKI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +A  +PD     L G  G +  V    + IL+   +    +   +   + D+   K+ + 
Sbjct: 78  IAKERPDGILATLGGQTGLNLAVKLKEEGILDKYNVKLLGTSFESIKTAEDRELFKRKMQ 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G PV  SI V      +        P +I+P       G  +   D+ +   +     
Sbjct: 138 EIGEPVAESITVTNVEDALKFAKNYGYPLIIRPAYTLGGTGGGIAHNDEELISIVDLGLK 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   ++L+E+ + G  E+   VM DA+ +   I     + +     ++  +S  V PA+
Sbjct: 198 KSMAQEVLVEKSLYGWKEIEFEVMRDAADNCITIC--SMENFDPVGVHT-GDSIVVAPAQ 254

Query: 219 -IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +    Y+ ++  +    +A+   G     F  DP S K + +E+N 
Sbjct: 255 TLSDYEYQMLRSASIKIIRALKIEGGCNIQFALDPQSHKYYVIEVNP 301



 Score = 73.2 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 30/215 (13%), Positives = 74/215 (34%), Gaps = 13/215 (6%)

Query: 77  IPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--SILVNRFTMDSQHLISPPYVIKPLK 134
           +    +   +  +S D+ +  +++    +        L      D    +  P +++P  
Sbjct: 651 VKILGTSFKSIDISEDREKFSKLLKELNINQPKGGYALTVEDAKDIALKLGFPLLVRPSY 710

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194
                 +  +   Q +   +  ++  + G  +LI++Y+DG E+    + D    +    +
Sbjct: 711 VIGGQSMEKVNTLQELIDYVKHATEVSPGKPVLIDKYIDGREVEVDAVSDGECVLIPGIM 770

Query: 195 PKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
              +           +S  + PA+ +       +        +A+  +G+    F     
Sbjct: 771 EHIERTGVHS----GDSFSIYPARNLTEREINTIIEYTEKISKALNVKGLINIQFAVKE- 825

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
              V+ LE+N +   T     P M+   G    +L
Sbjct: 826 -GTVYVLEVNPRASRT----VPIMSKATGVPMVKL 855


>gi|302868130|ref|YP_003836767.1| carbamoyl-phosphate synthase subunit L [Micromonospora aurantiaca
           ATCC 27029]
 gi|302570989|gb|ADL47191.1| Carbamoyl-phosphate synthase L chain ATP-binding [Micromonospora
           aurantiaca ATCC 27029]
          Length = 1821

 Score = 85.9 bits (212), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 48/234 (20%), Positives = 88/234 (37%), Gaps = 14/234 (5%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
           +++   L     D A+ V  G   ED     + E + + +      A     DK+ +K +
Sbjct: 69  KALERALVETGADAAW-VGWGFVAEDPAFAELCEKIGVTFVGPSPDAMRKLGDKIGAKLI 127

Query: 100 VSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
               GVPV P     +      + +   I  P ++K   GG   GI VI+ D  +     
Sbjct: 128 AEEVGVPVAPWSRGAVESLDDALRAAASIGYPLMLKATAGGGGRGIRVIRSDAELADAYE 187

Query: 156 ----QSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLN 210
               +++       + +E+ V G   +   V+ D       + V          K    +
Sbjct: 188 RTSQEAARAFGSGVVFLERLVTGARHVEVQVIADGQGTAWALGVRDCSVQRRNQKVIEES 247

Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           ++ V    +  +   E++  A     A+G RG +  +FL+ P  R   +LE+N 
Sbjct: 248 ASPV----LSPEQTAELKASAERLAVAVGYRGAATVEFLYHPGDRLFAFLEVNT 297


>gi|260101455|ref|ZP_05751692.1| carbamoyl-phosphate synthase large subunit chain [Lactobacillus
           helveticus DSM 20075]
 gi|260084729|gb|EEW68849.1| carbamoyl-phosphate synthase large subunit chain [Lactobacillus
           helveticus DSM 20075]
          Length = 858

 Score = 85.9 bits (212), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 45/293 (15%), Positives = 96/293 (32%), Gaps = 38/293 (12%)

Query: 24  SALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ----- 69
            AL+  G++   I         D   S  L    L  +   NV      E  +VQ     
Sbjct: 579 KALQKMGYEAIVINSNPETVSTDFSVSDKLYFEPLTLEDVLNVCDLEQPEGVIVQFGGQT 638

Query: 70  -----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQH 122
                A LE   +    + +     + D+    Q++ S  +     +        M +  
Sbjct: 639 SINLAAGLERHGVKILGTTVKDLDRAEDREEFDQIIKSLHLHQPQGLTATTHEGVMKAAD 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            +  P +++P        + ++     +   L   +       +L++ Y+DG E     +
Sbjct: 699 QLGYPVLVRPSYVLGGKAMEIVYSKDELEEYLHDHADIAEDHPILVDDYLDGRECDVDAI 758

Query: 183 GDAS---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAI 238
            D     L      +  +  +S        +S  V P +    ++ +++  +      A+
Sbjct: 759 SDGKTVLLPGIMEHIEHAGVHS-------GDSMAVYPPQTFSDEVEEKITDVTKKLALAL 811

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
            C+GI    F+       V+ +E+N +   T     P ++   G    ++   
Sbjct: 812 NCKGIMNIQFIVR--DGDVYVIEVNPRASRT----VPFLSKITGIEMAQVATR 858



 Score = 72.1 bits (176), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 50/286 (17%), Positives = 98/286 (34%), Gaps = 33/286 (11%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI---------DVD------------RSVGLV 45
           G ++E + S   G     AL D G++V  +         D               SV  +
Sbjct: 21  GQAAEFDYS---GTQACLALRDEGYEVVLVNSNPATIMTDTTIADKVYIEPLTVDSVSRI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +    PD     L G  G +  +      IL+ L I    + + +   + D+ + K++  
Sbjct: 78  IRQEYPDAILPTLGGQVGLNMALALAKTGILDELHIELLGTKLASIEQAEDREKFKELCQ 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G PV PS  V      +     I  P +++P       G  +      +         
Sbjct: 138 KLGEPVPPSKTVKTVEDALAFGDEIGYPIIVRPAFTMGGTGGGICHNHDELAEIAKNGLE 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   + LIE+ + G  E+   VM D+S +   +   ++  +     ++  +        
Sbjct: 198 LSPVTECLIEKSIAGYKEIEFEVMRDSSDNAMIVCCMEN--FDPVGIHTGDSIVFSPSQT 255

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +    Y+ ++  +    +A+   G        DP S     +E+N 
Sbjct: 256 LSDKEYQMLRDCSLKLIRALKIEGGCNVQLALDPNSLDYDVIEVNP 301


>gi|195953154|ref|YP_002121444.1| acetyl-CoA carboxylase, biotin carboxylase [Hydrogenobaculum sp.
           Y04AAS1]
 gi|195932766|gb|ACG57466.1| acetyl-CoA carboxylase, biotin carboxylase [Hydrogenobaculum sp.
           Y04AAS1]
          Length = 475

 Score = 85.9 bits (212), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 80/221 (36%), Gaps = 18/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+             +            DK+++K+V+ + G+PV P    
Sbjct: 76  AIHPGYGFLSENHEFAQACIDAGFIFIGPTPEQIETFGDKVKAKKVMKNLGIPVVPGSDE 135

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGDQ 165
            I       D    I  P ++K   GG   G+ V+ K + +         +S ++     
Sbjct: 136 PITKLEDAYDIAECIGYPIILKAAYGGGGRGMRVVYKKEDLKQNFESAQKESLAFFGKGD 195

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDI 223
           + IE+Y+     +   ++ D   +V  +            K        + P  K+  ++
Sbjct: 196 IFIEKYIQRPKHIEVQILADKYGNVVHLGERDCSIQRRHQK-----IIEITPSPKLDKNV 250

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             ++  ++  A    G       +F+ D  + + +++E+N 
Sbjct: 251 RNKMLGMSVRAMMKYGYESAGTIEFILDQTTNEFYFIEMNT 291


>gi|238495280|ref|XP_002378876.1| pyruvate carboxylase, putative [Aspergillus flavus NRRL3357]
 gi|220695526|gb|EED51869.1| pyruvate carboxylase, putative [Aspergillus flavus NRRL3357]
          Length = 646

 Score = 85.9 bits (212), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 44/217 (20%), Positives = 91/217 (41%), Gaps = 16/217 (7%)

Query: 58  LHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
           +H  +G   E     + +    I     G    + + DK+++KQ+ + C VPV P++  +
Sbjct: 81  VHPGYGFLSESAEFASRMHDAGITVIGPGPETLSCTGDKLKAKQLATQCKVPVLPAMPRS 140

Query: 115 RFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
              +         +  P +IK + GG   GI +++++  +   +  +++ +    + +E+
Sbjct: 141 TSDLKEIRTFARQVGYPIMIKAVDGGGGRGIRLVRQEGELEHAVRAATNESPSQTVFVEK 200

Query: 171 Y-VDGIE-LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEV 227
             VDG   +   V+GD       I V         L+          P+ +   ++ ++V
Sbjct: 201 AAVDGFHHVEVQVVGDG------IDVCHLWERDCSLQRRFQKVVEFAPSLMQNREVVEQV 254

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              A    +AI  R +   +FL     R+ ++LEIN 
Sbjct: 255 LNAALRMAKAIRYRSLGTVEFLVHNHRREFYFLEINP 291


>gi|224824059|ref|ZP_03697167.1| pyruvate carboxylase [Lutiella nitroferrum 2002]
 gi|224603478|gb|EEG09653.1| pyruvate carboxylase [Lutiella nitroferrum 2002]
          Length = 1145

 Score = 85.9 bits (212), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 34/245 (13%), Positives = 85/245 (34%), Gaps = 23/245 (9%)

Query: 33  VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASAL 89
            + +D+D  +  +      D     +H  +G   E+           I +          
Sbjct: 61  AAYLDID-DIIRIAREANVD----AIHPGYGFLSENPEFAEACATAGIAFIGPRPEVMRQ 115

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH----LISPPYVIKPLKGGSSLGIIVIK 145
             +K+ ++++  + GVPV P+     + +         +  P ++K   GG   G+ V++
Sbjct: 116 LGNKVSARELAQAAGVPVVPATGALPYDLADAQRMAAEVGYPLMLKASWGGGGRGMRVVE 175

Query: 146 KDQSIPLDLL----QSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFY 200
            +  +   +     ++ +    D++ +E+ V     +   ++GD     +          
Sbjct: 176 HEGELADAMEVARREAKAAFGNDEVYLEKLVRRARHVEVQILGD-----SHGNRVHLFER 230

Query: 201 SYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
              ++  +       PA  +      E+   A     A+        +FL D  +   ++
Sbjct: 231 DCSVQRRNQKVVERAPAPYLSEQQRAELCAAALKLADAVDYTHAGTVEFLMDADTGAFYF 290

Query: 260 LEINV 264
           +E+N 
Sbjct: 291 IEVNP 295


>gi|56695911|ref|YP_166262.1| acetyl-CoA carboxylase biotin carboxylase subunit [Ruegeria
           pomeroyi DSS-3]
 gi|56677648|gb|AAV94314.1| acetyl-CoA carboxylase, biotin carboxylase [Ruegeria pomeroyi
           DSS-3]
          Length = 449

 Score = 85.9 bits (212), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 77/221 (34%), Gaps = 20/221 (9%)

Query: 57  VLHGNFG---ED-GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--- 109
            +H  +G   E+ G VQ I+E   I +         +  DK+ +K      G+PV P   
Sbjct: 77  AIHPGYGFLSENAGFVQ-IVEDHGITFIGPSAEHIRIMGDKITAKDTAKELGIPVVPGSD 135

Query: 110 -SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
             +            I  P +IK   GG   G+ V +  + +         ++ +    D
Sbjct: 136 GGVADVAEARRVGEHIGYPVIIKATAGGGGRGMKVARNAKEMEHAFSTARSEAKAAFGND 195

Query: 165 QLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           ++ IE+Y+     +   V GD   +   +            K             I  + 
Sbjct: 196 EVYIEKYLTTPRHIEIQVFGDGKGNAVHLGERDCSLQRRHQKVF----EEAPGPCITPEE 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              + ++   A   I   G    +FL+   + + +++E+N 
Sbjct: 252 RARIGKICADAVARINYIGAGTVEFLY--ENGEFYFIEMNT 290


>gi|134103463|ref|YP_001109124.1| putative acetyl-CoA carboxylase alpha subunit [Saccharopolyspora
           erythraea NRRL 2338]
 gi|291005995|ref|ZP_06563968.1| putative acetyl-CoA carboxylase alpha subunit [Saccharopolyspora
           erythraea NRRL 2338]
 gi|133916086|emb|CAM06199.1| putative acetyl-CoA carboxylase alpha subunit [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 672

 Score = 85.9 bits (212), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 41/221 (18%), Positives = 79/221 (35%), Gaps = 17/221 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+    A      I +      A     DK+R+KQ V + GVPV P    
Sbjct: 80  AIHPGYGFLAENSAFAAACAEAGIVFIGPPASAIDSMGDKIRAKQTVQAAGVPVVPGRSE 139

Query: 112 --LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
             + +     +      P ++KP  GG   G+  +  + ++   +  +          D 
Sbjct: 140 PGMSDTDIRKAAVDAGFPVLLKPSAGGGGKGMRAVHDESALDEAIASARREARASFGDDT 199

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           L +E+YV     +   V+ DA   V  +   +        K             +  +  
Sbjct: 200 LFVERYVARPRHIEVQVLADAHGGVVHLGERECSLQRRHQKII----EEAPSPLLDAETR 255

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLS-RKVFWLEINV 264
             +   A  A +++G  G    +F+    +  + F++E+N 
Sbjct: 256 ARIGASAVDAARSVGYVGAGTVEFIVSADAPDEFFFMEMNT 296


>gi|87301340|ref|ZP_01084181.1| acetyl-CoA carboxylase [Synechococcus sp. WH 5701]
 gi|87284308|gb|EAQ76261.1| acetyl-CoA carboxylase [Synechococcus sp. WH 5701]
          Length = 454

 Score = 85.9 bits (212), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 78/220 (35%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-SIL 112
            +H  +G   E+     I     + +      A     DK  +K  +   GVP  P S  
Sbjct: 78  AIHPGYGFLAENDRFAEICAAHGLTFVGPSPEAIRAMGDKSTAKATMQRVGVPTIPGSEG 137

Query: 113 VNRFTMDS---QHLISPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSWNHGDQ 165
           +     ++      +  P +IK   GG   G+ ++++ + +         ++ +      
Sbjct: 138 LLEDAQEASVLAARMGFPVMIKATAGGGGRGMRLVQEPEQLEALFKAAQGEAEAAFGNPG 197

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           L +E++++    +   ++ D   +V  +            K             +  ++ 
Sbjct: 198 LYMEKFIERPRHVEVQILADRHGNVVHLGERDCSIQRRHQKLL----EEAPSPALDPELR 253

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +   A  A ++I   G    +FL D  S   +++E+N 
Sbjct: 254 RRMGEAAVAAARSITYEGAGTVEFLVD-RSGSFYFMEMNT 292


>gi|115522662|ref|YP_779573.1| pyruvate carboxylase [Rhodopseudomonas palustris BisA53]
 gi|115516609|gb|ABJ04593.1| pyruvate carboxylase [Rhodopseudomonas palustris BisA53]
          Length = 1149

 Score = 85.9 bits (212), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 78/221 (35%), Gaps = 18/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E            I +            +K+ ++ +  + GVPV P+   
Sbjct: 80  AIHPGYGFLSESPEFADACAEAGIVFVGPSSDTMRRLGNKVAARNLAIAVGVPVMPATEP 139

Query: 114 NRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGDQ 165
               +D+       I  P ++K   GG   G+ VI+ +  +    P    ++ +    D+
Sbjct: 140 LPDDLDAVKKLATSIGYPVMLKASWGGGGRGMRVIRDEAQLLRDAPAAKREAKAAFGKDE 199

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           + +E+ V+    +   ++GD   +V              ++          PA  +    
Sbjct: 200 VYLEKLVERARHVEVQILGDRHGNVV-----HLFERDCSVQRRHQKVVERAPAPYLSEAE 254

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             E+   A    ++         +FL D  + K +++E+N 
Sbjct: 255 RAELCGYAVAIAKSTNYLAAGTVEFLMDVDTGKFYFIEVNP 295


>gi|311108394|ref|YP_003981247.1| urea carboxylase [Achromobacter xylosoxidans A8]
 gi|310763083|gb|ADP18532.1| urea carboxylase [Achromobacter xylosoxidans A8]
          Length = 1219

 Score = 85.6 bits (211), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 36/215 (16%), Positives = 72/215 (33%), Gaps = 14/215 (6%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF-- 116
           +G   E        E   I +     L       K RS+++ +  GVP+ P   +     
Sbjct: 82  YGFLSESAEFAQACEDAGIAFVGPTPLQIREFGLKHRSRELAAEAGVPMTPGTGLLGSLG 141

Query: 117 -TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQLLIEQY 171
             +     I  P ++K   GG  +G+     +  +             +       IE+Y
Sbjct: 142 EALSQAERIGYPVMLKSTAGGGGIGLSRCDNEAELTAAFDSVQRMGEHFFSDGGAFIERY 201

Query: 172 VD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQR 229
           VD    +   + GD +       V         ++  +       PA + P+   + +  
Sbjct: 202 VDNARHVEVQIFGDGAG-----RVLALGERDCSVQRRNQKVIEETPAPLLPVATRQALHA 256

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            A    +++  R     +F++D      ++LE+N 
Sbjct: 257 AAVRLGESVNYRSAGTVEFIYDAARDSFYFLEVNT 291


>gi|307943594|ref|ZP_07658938.1| pyruvate carboxylase [Roseibium sp. TrichSKD4]
 gi|307773224|gb|EFO32441.1| pyruvate carboxylase [Roseibium sp. TrichSKD4]
          Length = 1149

 Score = 85.6 bits (211), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 77/221 (34%), Gaps = 18/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E        E   I +            +K+ ++ +    GVPV P+   
Sbjct: 81  AIHPGYGLLSESPEFVDACEAAGITFIGPKSETMRRLGNKVAARNLAIEAGVPVMPATEP 140

Query: 114 NRFTMDSQHLI----SPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSWNHGDQ 165
               +D    +      P ++K   GG   G+ V+  + ++         ++ +    D+
Sbjct: 141 LPDDIDEIKRLALEIGYPVMLKASWGGGGRGMRVLPDEATLEKEVIAAKREAKAAFGKDE 200

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           + +E+ V     +   ++GD    +  +            K          PA  +    
Sbjct: 201 IYLEKLVQRARHVEVQILGDGQGGLVHLFERDCSIQRRHQK-----VVERAPAPYLGEAK 255

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             E+ +      +A+  RG    +FL D  +  ++++E+N 
Sbjct: 256 RTELCQYGLQIGKAVNYRGAGTIEFLMDADTGSIYFIEVNP 296


>gi|114771115|ref|ZP_01448555.1| acetyl-CoA carboxylase [alpha proteobacterium HTCC2255]
 gi|114548397|gb|EAU51283.1| acetyl-CoA carboxylase [alpha proteobacterium HTCC2255]
          Length = 447

 Score = 85.6 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 73/220 (33%), Gaps = 18/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---- 109
            +H  +G   E+     +LE   I +         +  DK+ +K+ + + GVP  P    
Sbjct: 77  AVHPGYGFLSENASFVQVLEDHGITFIGPSAEHIRMMGDKITAKETMINLGVPCVPGSPG 136

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGDQ 165
            +            +  P ++K   GG   G+ +      +         +S +    D+
Sbjct: 137 GVPTLEEAHKVSDKMGFPVIVKATAGGGGRGMKLALTKNDLNEAFGSARSESKAAFGNDE 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+Y+     +   V GD       +            K             I  ++ 
Sbjct: 197 VYIEKYLQKPRHIEVQVFGDGKGRAVHLGERDCSLQRRHQKVF----EEAPGPTITAELR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            ++      A   IG  G    +FL+     + +++E+N 
Sbjct: 253 DKIGSTCSEAVANIGYSGAGTIEFLY--EDGEFYFIEMNT 290


>gi|114328409|ref|YP_745566.1| urea carboxylase [Granulibacter bethesdensis CGDNIH1]
 gi|114316583|gb|ABI62643.1| urea carboxylase [Granulibacter bethesdensis CGDNIH1]
          Length = 1197

 Score = 85.6 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 38/256 (14%), Positives = 83/256 (32%), Gaps = 30/256 (11%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      L    I +         +   K  +++   +CGVP+ P   +
Sbjct: 77  AVHPGYGFLSENAAFANRLAEEGIRFIGPSPEHMRIFGLKHTAREAAQACGVPLLPGTGL 136

Query: 114 N---RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQL 166
               +   ++   I  P +IK   GG  +G+ + +    +          +        +
Sbjct: 137 LPDLQAAHEAAGEIGYPVMIKSTAGGGGIGLQLCRSADELGPLFETVRRLSESNFKDGGI 196

Query: 167 LIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
            +E+YV     +   + GD    V  +            K             +P     
Sbjct: 197 YLEKYVARARHIEVQIFGDGQGHVVALGERDCSLQRRNQK----VVEETPAPNLPAATRA 252

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285
            +   A    + +        +F++D  + + ++LE+N             +    G + 
Sbjct: 253 AMMDAAIRLGRHVAYESAGTVEFIYDDAADQFYFLEVNT-----------RLQVEHGVTE 301

Query: 286 R----ELLLWMVEDAS 297
           +    +L+ WMV  A+
Sbjct: 302 QVTGVDLVEWMVRQAA 317


>gi|254431447|ref|ZP_05045150.1| acetyl-CoA carboxylase, biotin carboxylase [Cyanobium sp. PCC 7001]
 gi|197625900|gb|EDY38459.1| acetyl-CoA carboxylase, biotin carboxylase [Cyanobium sp. PCC 7001]
          Length = 450

 Score = 85.6 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 72/220 (32%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     I     + +      A     DK  +K  +   GVP  P    
Sbjct: 78  AIHPGYGFLAENDRFAEICADHGLIFVGPSPEAIRAMGDKSTAKATMQRVGVPTIPGSEG 137

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSWNHGDQ 165
            +            +  P +IK   GG   G+ ++     +         ++ +      
Sbjct: 138 LLHSPEQAAGLAASMGYPVMIKATAGGGGRGMRLVPGPDQLEGLFKAAQGEAEAAFGNPG 197

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           L +E+++D    +   V+ D   +V  +            K             I  D+ 
Sbjct: 198 LYMEKFIDRPRHVEVQVLADRHGNVVHLGERDCSIQRRHQKLL----EEAPSVAINADLR 253

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +++   A  A + IG  G    +FL D      +++E+N 
Sbjct: 254 RQMGDAAVAAARTIGYEGAGTVEFLVDRSGN-FYFMEMNT 292


>gi|126664729|ref|ZP_01735713.1| acetyl-CoA carboxylase, biotin carboxylase [Marinobacter sp. ELB17]
 gi|126631055|gb|EBA01669.1| acetyl-CoA carboxylase, biotin carboxylase [Marinobacter sp. ELB17]
          Length = 446

 Score = 85.6 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 34/216 (15%), Positives = 74/216 (34%), Gaps = 16/216 (7%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-----ILV 113
           +G   E+      +E     +         L  +K+ +   + S GVP  P         
Sbjct: 82  YGFLAENADFAEQVEKSGFRFIGPRAETIRLMGNKVSAINAMISAGVPTVPGSNGALTED 141

Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQLLIE 169
           +  T+     I  P +IK   GG   G+ V+  + ++   +     ++ S      + +E
Sbjct: 142 DDLTLKVAKKIGYPVIIKAASGGGGRGMQVVHSEAALLKAVQITQTEARSAFGDPTVYLE 201

Query: 170 QYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           ++++    +   V+ D   +   +      F     K             I  +  ++  
Sbjct: 202 KFLERPRHVEVQVLADMHGNCIHLGDRDCSFQRRHQKVL----EEAPAPGIDPEAREKTL 257

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +    A + IG  G    +FL+       +++E+N 
Sbjct: 258 KACVDACKEIGYVGAGTFEFLY--QDGGFYFIEMNT 291


>gi|239615469|gb|EEQ92456.1| carboxylase:pyruvate/acetyl-CoA/propionyl-CoA [Ajellomyces
           dermatitidis ER-3]
          Length = 671

 Score = 85.6 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 36/203 (17%), Positives = 78/203 (38%), Gaps = 12/203 (5%)

Query: 69  QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD----SQHLI 124
           Q I E         G    A + DK+++K++  +CGVP+  ++      ++        +
Sbjct: 97  QRIWEEAGAKVIGPGWEVLARTGDKLQAKELAEACGVPILKAMKTPTNDINLISRFAAEV 156

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG--IELTCGVM 182
             P ++K + GG   GI  +K    +   L +++  +   ++ +E+   G    +   ++
Sbjct: 157 GYPVMVKAVDGGGGRGIRFVKGPDELQSALDRATGESPSKKVFVEKAAVGGFHHVEVQII 216

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCR 241
           GD + +V  +           ++          PA +    + + V   A      I   
Sbjct: 217 GDGTGEVRHLWE-----RDCSVQRRFQKIVECAPAMMKDRGLIRRVIEAALRIASEIKYL 271

Query: 242 GISRSDFLFDPLSRKVFWLEINV 264
            +   +FL      + ++LEIN 
Sbjct: 272 SLGTFEFLVSGELSEFYFLEINP 294


>gi|224087339|ref|XP_002308127.1| predicted protein [Populus trichocarpa]
 gi|290463112|sp|B9HBA8|ACCC1_POPTR RecName: Full=Biotin carboxylase 1, chloroplastic; AltName:
           Full=Acetyl-CoA carboxylase subunit A 1; Short=ACC;
           Flags: Precursor
 gi|222854103|gb|EEE91650.1| predicted protein [Populus trichocarpa]
          Length = 528

 Score = 85.6 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 80/220 (36%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
           +LH  +G   E+ +   +     I +      +  +  DK  +++ +   GVP  P    
Sbjct: 140 MLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRVMGDKSTARETMKKAGVPTVPGSDG 199

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS----IPLDLLQSSSWNHGDQ 165
            +      +   + I  P +IK   GG   G+ + K+       +     ++++    D 
Sbjct: 200 LLQSTEEGVRLANEIGYPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDG 259

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+YV +   +   V+ D   +V               K             +  ++ 
Sbjct: 260 VYLEKYVQNPRHIEFQVLADKFGNVVHFGERDCSIQRRNQKLL----EEAPSPALTPELR 315

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K +   A  A  +IG  G+   +FL D      +++E+N 
Sbjct: 316 KAMGDAAVSAAASIGYIGVGTVEFLLDER-GSFYFMEMNT 354


>gi|282897930|ref|ZP_06305925.1| Acetyl-CoA carboxylase, biotin carboxylase [Raphidiopsis brookii
           D9]
 gi|281197074|gb|EFA71975.1| Acetyl-CoA carboxylase, biotin carboxylase [Raphidiopsis brookii
           D9]
          Length = 335

 Score = 85.6 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 32/184 (17%), Positives = 66/184 (35%), Gaps = 14/184 (7%)

Query: 90  SMDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145
             DK  +K+ +   GVP  P     +      +   H I  P +IK   GG   G+ +++
Sbjct: 1   MGDKSTAKETMQKAGVPTVPGSDGLVETETQGLAIAHQIGYPVMIKATAGGGGRGMRLVR 60

Query: 146 KDQS----IPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFY 200
            +            ++ +      + IE++++    +   ++GD   +V  +        
Sbjct: 61  SEDEFIKLFHAAQGEAGAAFGNAGVYIEKFIERPRHIEFQILGDNYGNVIHLGERDCSIQ 120

Query: 201 SYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260
               K             +  D+ +++   A  A Q I   G    +FL D      +++
Sbjct: 121 RRNQKLL----EEAPSPALDEDLREKMGHAAVKAAQFINYTGAGTVEFLLDKS-GHFYFM 175

Query: 261 EINV 264
           E+N 
Sbjct: 176 EMNT 179


>gi|40253001|dbj|BAD05864.1| putative D-Ala-D-Ala ligase [Streptomyces garyphalus]
          Length = 81

 Score = 85.6 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 3/81 (3%)

Query: 219 IPLDIYKEVQRLAFLAHQAIGCR--GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPE 276
           IP +    +Q+LA  AH+A+G      SR+DF  D    +   LE+N  PG+T  S+ P 
Sbjct: 1   IPEEFASRLQQLALRAHEALGFGPHTYSRADFRCDAA-GEPMCLEVNALPGLTATSLLPL 59

Query: 277 MAAYAGYSFRELLLWMVEDAS 297
            A+ AG+++ +L   +V  A+
Sbjct: 60  GASGAGWTYADLAERIVSLAT 80


>gi|170693817|ref|ZP_02884974.1| urea carboxylase [Burkholderia graminis C4D1M]
 gi|170141235|gb|EDT09406.1| urea carboxylase [Burkholderia graminis C4D1M]
          Length = 1200

 Score = 85.6 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 45/281 (16%), Positives = 94/281 (33%), Gaps = 37/281 (13%)

Query: 33  VSQIDVDRSVGLV----LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
            + +DV + + +     +  + P   F   + +FGE        E   I +         
Sbjct: 58  ATYLDVQKILEIARRENVQAIHPGYGFLSENASFGE------ACEAAGIAFIGPTPAQLR 111

Query: 89  LSMDKMRSKQVVSSCGVPVCPSI---LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145
               K  ++ + +  GVP+             +D+   I  P ++K   GG  +G+ V  
Sbjct: 112 AFGLKHTARAIAAEQGVPMLEGTGLLDDLPAALDAAASIGYPVMLKSTAGGGGIGMRVCW 171

Query: 146 KDQSIPLDLLQSSSWNH----GDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFY 200
               +                   + +E+Y++    L   V GD   D   + V      
Sbjct: 172 NVDELSAHFDVVKRLGQNNFSDAGVFLEKYIERARHLEVQVFGDGHGDAIALGVRDCSVQ 231

Query: 201 SYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260
               K             +P  +   +   A    +A+  R     +F++D  +++ ++L
Sbjct: 232 RRNQKVL----EETPAPCLPEGMPAALCDAAVKLAKAVSYRSAGTVEFVYDSAAQRFYFL 287

Query: 261 EINVQPGMTPVSIFPEMAAYAGYSFR----ELLLWMVEDAS 297
           E+N             +    G + +    +L+ WM+E A+
Sbjct: 288 EVNT-----------RLQVEHGVTEQVWGVDLVRWMIELAA 317


>gi|302799302|ref|XP_002981410.1| hypothetical protein SELMODRAFT_420859 [Selaginella moellendorffii]
 gi|300150950|gb|EFJ17598.1| hypothetical protein SELMODRAFT_420859 [Selaginella moellendorffii]
          Length = 1194

 Score = 85.6 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 55/280 (19%), Positives = 101/280 (36%), Gaps = 38/280 (13%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G++V  I         D D              V  V+A  +PD    
Sbjct: 123 SGTQACKALKEEGYEVVLINSNPATIMTDPDLADRTYIAPMTPELVEQVIAKERPDAVLP 182

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G    +  V       L+   +    + + A   + D+   +Q +   GV   PS  
Sbjct: 183 TMGGQTALNLAVALAESGALDKYGVELIGAKLDAIKKAEDRDLFRQAMQKIGVKTPPSGI 242

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
              +      ++ +   P +I+P       G  +    + +        + +   Q+L+E
Sbjct: 243 ATTLEECFQIAETIGEFPLIIRPAFTLGGTGGGIAYNREELETICKAGLTASITSQVLVE 302

Query: 170 QYVDG-IELTCGVMGDASLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPAK-IPLDIYKE 226
           + + G  E    VM D + +V  I   ++ D           +S  V PA+ +    Y+ 
Sbjct: 303 KSLLGWKEYELEVMRDLADNVVIICSIENIDPMGVHT----GDSITVAPAQTLTDKEYQR 358

Query: 227 VQRLAFLAHQAIG--CRGISRSDFLFDPLSRKVFWLEINV 264
           ++  A    + IG  C G S   F  +P   +V  +E+N 
Sbjct: 359 LRDQAIAIIREIGVECGG-SNVQFAINPEDGEVMVIEMNP 397



 Score = 52.8 bits (126), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 27/188 (14%), Positives = 70/188 (37%), Gaps = 8/188 (4%)

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSS 138
            +   +   S D+ R + +++  G+   P  +       +     +  P V++P      
Sbjct: 769 GTSPDSIDASEDRKRFESILNQLGIKQPPGGIARSEEDALAIAKRVGFPVVVRPSYVLGG 828

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKS 197
             + ++  +  +   L  +   + G  +L+++Y+ D  E+    + D +  V    + + 
Sbjct: 829 RAMEIVYSNDKLKKYLETAVEVDPGRPVLVDKYLTDSSEIDVDCLADGNGGVVIGGIME- 887

Query: 198 DFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256
             +  +    S +S   +P + IP      ++       + +   G+    F     S +
Sbjct: 888 --HIEQAGVHSGDSACSIPTQTIPAVALATIRDATTKLAKKLNVCGLMNCQFAIT-QSGE 944

Query: 257 VFWLEINV 264
           V+ +E N 
Sbjct: 945 VYIIEANP 952


>gi|327355154|gb|EGE84011.1| Carboxylase:pyruvate/acetyl-CoA/propionyl-CoA [Ajellomyces
           dermatitidis ATCC 18188]
          Length = 670

 Score = 85.6 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 36/203 (17%), Positives = 78/203 (38%), Gaps = 12/203 (5%)

Query: 69  QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD----SQHLI 124
           Q I E         G    A + DK+++K++  +CGVP+  ++      ++        +
Sbjct: 97  QRIWEEAGAKVIGPGWEVLARTGDKLQAKELAEACGVPILKAMKTPTNDINLISRFAAEV 156

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG--IELTCGVM 182
             P ++K + GG   GI  +K    +   L +++  +   ++ +E+   G    +   ++
Sbjct: 157 GYPVMVKAVDGGGGRGIRFVKGPDELQSALDRATGESPSKKVFVEKAAVGGFHHVEVQII 216

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCR 241
           GD + +V  +           ++          PA +    + + V   A      I   
Sbjct: 217 GDGTGEVRHLWE-----RDCSVQRRFQKIVECAPAMMKDRGLIRRVIEAALRIASEIKYL 271

Query: 242 GISRSDFLFDPLSRKVFWLEINV 264
            +   +FL      + ++LEIN 
Sbjct: 272 SLGTFEFLVSGELSEFYFLEINP 294


>gi|323349797|gb|EGA84012.1| Dur1,2p [Saccharomyces cerevisiae Lalvin QA23]
          Length = 1686

 Score = 85.6 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 29/214 (13%), Positives = 73/214 (34%), Gaps = 12/214 (5%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
           +G   E+           I +             K  ++Q+    GVP+ P  L+     
Sbjct: 713 YGFLSENADFSDACTSAGITFVGPSGDIIRGLGLKHSARQIAQKAGVPLVPGSLLITSVE 772

Query: 119 DSQHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQLLIEQY 171
           +++ +   +  P ++K   GG  +G+  +  ++ I         Q  ++     + +E++
Sbjct: 773 EAKKVAAELEYPVMVKSTAGGGGIGLQKVDSEEDIEHIFETVKHQGETFFGDAGVFLERF 832

Query: 172 VD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
           ++    +   +MGD       +            K             +P      +++ 
Sbjct: 833 IENARHVEVQLMGDGFGKAIALGERDCSLQRRNQK----VIEETPAPNLPEKTRLALRKA 888

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           A      +  +     +F++D    + ++LE+N 
Sbjct: 889 AESLGSLLNYKCAGTVEFIYDEKKDEFYFLEVNT 922


>gi|307718651|ref|YP_003874183.1| CarB family protein [Spirochaeta thermophila DSM 6192]
 gi|306532376|gb|ADN01910.1| CarB family protein [Spirochaeta thermophila DSM 6192]
          Length = 536

 Score = 85.6 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 40/216 (18%), Positives = 90/216 (41%), Gaps = 20/216 (9%)

Query: 58  LHGNF--GED--GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
           LHG F  G D    V  + E + +P        +  + DK   +  +   G+PV    ++
Sbjct: 72  LHGVFTAGTDFSTSVAYVAERMGLP--GIPYEVALRAKDKALMRDHLHRAGIPVPRYGVL 129

Query: 114 NRFT-----MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168
           +R       ++    I  P V+KP     + G+ +++    +     ++++ +   ++++
Sbjct: 130 SREERANRLLEEARRIPFPLVVKPADNMGARGVRLVRDTTELEEAFERAAACSLSGKVVL 189

Query: 169 EQYVDGIELTC-GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227
           E++++G E +   V+    + +  +A     F  Y ++       H +P   P  +  E+
Sbjct: 190 EEFLEGPEFSIDAVVWRGEVHICGVADRHIFFPPYFVEMG-----HTMPTDTPPSVRAEL 244

Query: 228 QRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEI 262
           + +   A +A+G   G ++ D  +    R     EI
Sbjct: 245 EEVFVQAVKALGITEGAAKGDVFYT--GRGPVIGEI 278


>gi|307243666|ref|ZP_07525806.1| acetyl-CoA carboxylase, biotin carboxylase subunit
           [Peptostreptococcus stomatis DSM 17678]
 gi|306492875|gb|EFM64888.1| acetyl-CoA carboxylase, biotin carboxylase subunit
           [Peptostreptococcus stomatis DSM 17678]
          Length = 474

 Score = 85.6 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 34/221 (15%), Positives = 79/221 (35%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---S 110
            +H  FG   E+     + E+  I +        A+  DK  SK+++   GVPV      
Sbjct: 100 AIHPGFGFLSENPGFARMCEVYNIKFIGPTSRVMAMMGDKEVSKKMMKEAGVPVVEGSDG 159

Query: 111 ILVN-RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
           ++ N     +    +  P +IK   GG   G+ +++    +      +            
Sbjct: 160 VVENLEEAKEVLERLGLPVIIKARSGGGGKGMRLVEDMDDLKRQFDSARKEAQNAFGDSG 219

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           + IE+++     +   +M D   ++              L+ +        P + +   I
Sbjct: 220 VYIEKFIKSPRHIEVQLMADEHGNII-----HLGARDCSLQMNHQKVIEEAPPEGVDHAI 274

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             ++   +  A +++    +   ++L D      +++E+N 
Sbjct: 275 LNQLYETSIRAAKSVSYTSVGTIEYLLD-QDGSYYFMEMNT 314


>gi|326314894|ref|YP_004232566.1| methylcrotonoyl-CoA carboxylase [Acidovorax avenae subsp. avenae
           ATCC 19860]
 gi|323371730|gb|ADX43999.1| Methylcrotonoyl-CoA carboxylase [Acidovorax avenae subsp. avenae
           ATCC 19860]
          Length = 663

 Score = 85.6 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 72/220 (32%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+           + +      A     DK  +K+++   G+P  P    
Sbjct: 82  AVHPGYGFLAENADFAEACRAAGLVFVGPSPEAIRAMGDKAGAKRLMMDAGIPCIPGYQG 141

Query: 114 NRFT----MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSWNHGDQ 165
           +        D    I  P +IK   GG   G+ +++  +  P        ++ +    D 
Sbjct: 142 SDQDSGRLADEAARIGYPVMIKATAGGGGRGMRLVRSAEEFPDLLRSARSEARNAFGDDT 201

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           +++E+ + +   +   V  D       +            K             +   + 
Sbjct: 202 VILERAIVEPRHVEIQVFADRHGQAVHLGERDCSVQRRHQK----VIEEAPSPAVTPGLR 257

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +   A  A +AIG  G    +FL D      +++E+N 
Sbjct: 258 ARMGATAVQAARAIGYEGAGTLEFLLD-REGHYYFMEMNT 296


>gi|212212586|ref|YP_002303522.1| methylcrotonyl-CoA carboxylase biotin-containing subunit [Coxiella
           burnetii CbuG_Q212]
 gi|212010996|gb|ACJ18377.1| methylcrotonyl-CoA carboxylase biotin-containing subunit [Coxiella
           burnetii CbuG_Q212]
          Length = 661

 Score = 85.6 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 39/222 (17%), Positives = 81/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   ED    A+     + +      A A   DK  +K+++    VPV P    
Sbjct: 77  AIHPGYGFLAEDEKFAALCHQKGLTFIGPPPAAIAAMGDKREAKRLMEKASVPVVPGYQG 136

Query: 114 NRFTM----DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS-----SSWNHGD 164
            +  +    +    I  P +IK   GG   G+ ++     +   L  +     SS++  D
Sbjct: 137 KQQDLKTLTEQAKKIGFPLLIKASAGGGGKGMRLVTIVNELEHALQSAKREAKSSFD-DD 195

Query: 165 QLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLD 222
            + +E+Y+     +   +  D   +   +           ++          PA  +   
Sbjct: 196 SVFLEKYINPARHIEVQIFIDQKGNGVYL-----FDRDCSIQRRHQKIIEEAPAPNLSDL 250

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +++   A  A +A+   G    +FL D +    +++E+N 
Sbjct: 251 TRQKMGETAVKAAKAVNYVGAGTVEFLVDKMEN-FYFMEMNT 291


>gi|212534414|ref|XP_002147363.1| 3-methylcrotonyl-CoA carboxylase subunit alpha (MccA), putative
           [Penicillium marneffei ATCC 18224]
 gi|210069762|gb|EEA23852.1| 3-methylcrotonyl-CoA carboxylase subunit alpha (MccA), putative
           [Penicillium marneffei ATCC 18224]
          Length = 712

 Score = 85.6 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 52/287 (18%), Positives = 97/287 (33%), Gaps = 44/287 (15%)

Query: 13  EVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFN---------------- 56
           E++L  G+         G KV+ +  +       A   P  AFN                
Sbjct: 50  EIALRVGRTATQH----GIKVTTLYTNPDSKAQHALSSP-YAFNLGETAAYLDGDRIIEI 104

Query: 57  -------VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP 106
                   +H  +G   E+           + +      A     DK RSK+++++ GVP
Sbjct: 105 AKREGCQAIHPGYGFLSENSEFAQKCANAGLVFIGPPPKAIEDMGDKSRSKEIMTTAGVP 164

Query: 107 VCPSILVNRFT----MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL--LQSSSW 160
             P                  +  P +IK +KGG   G+ +++        L   ++ + 
Sbjct: 165 CVPGYHGTNQDPLFLEAEADKMEYPVLIKAVKGGGGKGMRIVRSKDEFQDQLRSAKNEAL 224

Query: 161 NH--GDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
           N    D +L+E+Y+     +   V  D   +   +            K            
Sbjct: 225 NSFGNDHMLVEKYITTPRHIEVQVFADKHGNCVALGERDCSIQRRHQKIL----EESPAP 280

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +P  + K++   A  A  A+G  G    +F+FD  +   +++E+N 
Sbjct: 281 HLPDAVRKDLWDKARAAALAVGYEGAGTVEFIFDNDTGNFYFMEMNT 327


>gi|291557897|emb|CBL35014.1| D-alanine-D-alanine ligase and related ATP-grasp enzymes
           [Eubacterium siraeum V10Sc8a]
          Length = 325

 Score = 85.6 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 46/234 (19%), Positives = 87/234 (37%), Gaps = 18/234 (7%)

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKP 132
           +   I           +  DK  +  ++    +P     LV   T D+ +    P V+KP
Sbjct: 94  DFSGIYVVGHRTKDVEMYDDKFSTNTLLLQNELPAVTDYLV---TADTVYNGEYPCVLKP 150

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSW-NHGDQLLIEQYVDGIELTCGVMGDA-SLDVT 190
           ++G  S G++     +       ++ +   +GD ++ E+Y+ G E+T  V  D  SL   
Sbjct: 151 IRGRGSQGVVKCDTPEEFIKARDEAFASGRYGDTMMAEEYLGGTEVTLTVFPDGTSLPFI 210

Query: 191 EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
           E    K+    Y      + ++ V+           +++   LA   +G + + R D   
Sbjct: 211 ERFDQKNGIAPYNGDVPVVKNSRVIE---DTPQLTALRKSCELAVWLLGLKAVVRIDCRA 267

Query: 251 DPLSRKVFWLEINVQPGMTP---------VSIFPEMAAYAGYSFRELLLWMVED 295
           D  +      + N +P +T           S+    A  A   +  LL  M+E 
Sbjct: 268 DK-NGNFKMFDFNPKPNLTGASRPHRQDLNSLTLMAAEAAEMDYFGLLTKMLET 320


>gi|291276471|ref|YP_003516243.1| biotin carboxylase [Helicobacter mustelae 12198]
 gi|290963665|emb|CBG39497.1| biotin carboxylase [Helicobacter mustelae 12198]
          Length = 452

 Score = 85.6 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 39/225 (17%), Positives = 79/225 (35%), Gaps = 14/225 (6%)

Query: 49  LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
            + D  F   +G   E+     I    +I +         L  DK ++K V+   GVPV 
Sbjct: 80  FEADAIFPG-YGFLSENQNFAEICAHHDIEFIGPSAEVMMLMSDKSKAKDVMKEAGVPVI 138

Query: 109 ----PSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSW 160
                ++   +        I  P +IK   GG   G+ V++    +         ++ S 
Sbjct: 139 MGSDGALKSYQEAQSVAEQIGYPIIIKAAAGGGGRGMRVVEDKSLLKNLYLAAESEALSA 198

Query: 161 NHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI 219
                + +E+++     +   ++GD   +V  +            K             +
Sbjct: 199 FGDGTIYMEKFIRNPKHIEVQILGDKHGNVIHVGERDCSVQRRNQK----LIEETPAVVL 254

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              + +++   A  A + IG  G    +FL D  +   +++E+N 
Sbjct: 255 NPAVRQKLLDTALRAAKHIGYVGAGTFEFLLDSNNEDFYFMEMNT 299


>gi|240171582|ref|ZP_04750241.1| acetyl-/propionyl-coenzyme A carboxylase alpha chain AccA1
           [Mycobacterium kansasii ATCC 12478]
          Length = 657

 Score = 85.6 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 79/221 (35%), Gaps = 17/221 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+    A  E   + +      A  +  DK+ +K  V++  VPV P +  
Sbjct: 77  AIHPGYGFLSENADFAAACERAGVVFLGPPTRAIEVMGDKITAKNAVAAFDVPVVPGVAK 136

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN----HGDQ 165
                D    +   +  P +IKP  GG   G+ +++    +   L+ +          D 
Sbjct: 137 PGLNDDDLVAAADEVGYPVLIKPSAGGGGKGMRLVEDPARLRDALVSARREAGSSFGDDT 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           L +E+++     +   V+ D   +V  +   +        K           A +     
Sbjct: 197 LFLERFILRPRHIEVQVLADTHGNVVHLGERECSLQRRHQK----VIEEAPSALLDTQTR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFD-PLSRKVFWLEINV 264
             +   A    +++   G    +F+     + + F++E+N 
Sbjct: 253 ARIGAAACNTARSVDYVGAGTVEFIVSAERADEFFFMEMNT 293


>gi|320101561|ref|YP_004177152.1| carbamoyl-phosphate synthase large subunit [Isosphaera pallida ATCC
           43644]
 gi|319748843|gb|ADV60603.1| carbamoyl-phosphate synthase large subunit [Isosphaera pallida ATCC
           43644]
          Length = 1083

 Score = 85.6 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 54/278 (19%), Positives = 97/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQID---------------------VDRSVGLVLAHLKPDLAFN 56
           SG     AL + GF+V  ++                     +  +V  ++A  +PD    
Sbjct: 29  SGTQACKALREEGFRVVLVNSNPATIMTDPEMADRTYIEPVIPEAVADIIAVERPDAVLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G  G +  +    Q +LE        +   A   + D+   K+ ++  G+    S L
Sbjct: 89  TLGGQTGLNVALALADQGVLERYGCRMIGANAEAIRKAEDRQLFKKCMAEIGLECARSGL 148

Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                        I  P V++P       G  +    +        +   +    +L+E+
Sbjct: 149 ATSLEEARALRDEIGLPCVLRPSFTLGGSGGGIAFNKEEFERIAAHALELSPVHSVLVEE 208

Query: 171 YVDG-IELTCGVMGDASL-DVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            V G  E    VM D +   V   ++   D           +S  V PA+ +    Y+ +
Sbjct: 209 SVIGWKEYEMEVMRDGADNAVVVCSIENFDPMGVHT----GDSITVAPAQTLSDKEYQTL 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    +AIG   G S   F  DP + +V  +E+N 
Sbjct: 265 RDASLAILRAIGVETGGSNVQFAVDPRTGRVLVIEMNP 302



 Score = 75.2 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 46/263 (17%), Positives = 96/263 (36%), Gaps = 28/263 (10%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH-----G---NFGEDGL 67
           AL   G++V  +         D D S  L    L  +   N+       G    FG  G 
Sbjct: 591 ALRADGYEVVMVNSNPETVSTDYDTSDQLFFEPLTVEDVLNICERVKPIGLVVQFG--GQ 648

Query: 68  ----VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--SILVNRFTMDSQ 121
               +   LE   +P   +   +  L+ D+ R  QV++  G+   P  S +         
Sbjct: 649 TPLNLARALEAAGVPILGTSPESIDLAEDRDRFSQVLARLGLRQTPNGSAVKVEEAARIA 708

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
             I  P +++P        + ++  + S+   + ++   +    +LI+++++   +   V
Sbjct: 709 ATIGYPVLVRPSFVLGGRAMEIVYDESSLLKYMNEAVDVSSDRPVLIDKFLE-DAVEVDV 767

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241
                     +     +       +S  ++  + P  +P +I  E++R   L   A+  +
Sbjct: 768 DAVRDATGVVVVAGVMEHIEEAGIHSGDSACAIPPHNLPPEIIAEIKRQTRLLADALEVK 827

Query: 242 GISRSDFLFDPLSRKVFWLEINV 264
           G+   +  F     +V+ LE N 
Sbjct: 828 GL--MNLQFAVKDGQVYVLEANP 848


>gi|254487955|ref|ZP_05101160.1| urea carboxylase [Roseobacter sp. GAI101]
 gi|214044824|gb|EEB85462.1| urea carboxylase [Roseobacter sp. GAI101]
          Length = 1170

 Score = 85.6 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 43/256 (16%), Positives = 93/256 (36%), Gaps = 30/256 (11%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+    A L    I +    +        K  ++ +  +  VP+ P    
Sbjct: 77  AVHPGYGFLSENTDFAARLADAGITFIGPRVEHLLAFGMKHTARDLAMAADVPLLPGSGL 136

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ----SSSWNHGDQL 166
           +      +     I  P ++K   GG  +G+ +   + ++          +++     ++
Sbjct: 137 LATAAQAVAEAARIGYPVMLKSTAGGGGIGMQLCADEAALTAAFETVGRTANASFGDARV 196

Query: 167 LIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIY 224
            IE++V D   +   V GD +  V  +           L+  +       PA  +P  + 
Sbjct: 197 FIERFVADARHVEVQVFGDGAGRVIALGE-----RDCSLQRRNQKVVEETPAPGLPDAVR 251

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI---FPEMAAYA 281
            ++   A     ++        +F++DPL    ++LE+N +       +    P   A  
Sbjct: 252 AQLHAAAKALCASVSYASAGTVEFIYDPLREDFYFLEVNTR-------LQVEHPVTEAVY 304

Query: 282 GYSFRELLLWMVEDAS 297
           G    +L+ WM+  A+
Sbjct: 305 GI---DLVEWMIRQAA 317


>gi|210076310|ref|XP_504800.2| YALI0E35156p [Yarrowia lipolytica]
 gi|199427005|emb|CAG80408.2| YALI0E35156p [Yarrowia lipolytica]
          Length = 1820

 Score = 85.6 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 33/213 (15%), Positives = 75/213 (35%), Gaps = 12/213 (5%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--- 115
           +G   E+       E   I +      +      K  ++++  +  VP+ P   +     
Sbjct: 700 YGFLSENADFSDACEEAGIVFVGPTGDSIRKLGLKHSAREIALASDVPLVPGTGLIETVA 759

Query: 116 FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQLLIEQY 171
              ++   +  P +IK   GG  +G+  + K + +         Q  S+   D + +E++
Sbjct: 760 EAEEAAKKLEYPLMIKSTAGGGGIGLQKVDKPEDLKRAFDTVKHQGKSFFGDDGVFMERF 819

Query: 172 VD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
           V+    +   ++GD   +   I            K              P +    +   
Sbjct: 820 VEKARHVEVQILGDGKGNAIAIGERDCSLQRRNQK----VIEETPAPNFPAETRTRMMNA 875

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
           + +  + +  RG    +F+FD    + ++LE+N
Sbjct: 876 SEMLAKNLNYRGAGTVEFIFDEKRNEFYFLEVN 908


>gi|221632246|ref|YP_002521467.1| carbamoyl-phosphate synthase large subunit [Thermomicrobium roseum
           DSM 5159]
 gi|254813666|sp|B9KXM5|CARB_THERP RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|221156776|gb|ACM05903.1| carbamoyl-phosphate synthase, large subunit [Thermomicrobium roseum
           DSM 5159]
          Length = 1078

 Score = 85.6 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 46/225 (20%), Positives = 91/225 (40%), Gaps = 13/225 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTMDSQHLISPPYV 129
           L    +P   +   A  L+ D+ R ++ +   G+P  P   +      +++   I  P +
Sbjct: 652 LAAAGVPILGTDQDAIDLAEDRRRFERFLHELGIPQPPGAGVTTLEEALETAERIGYPVL 711

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           ++P        + V+ + + +   L  S ++  G  +LI++Y+DGIEL    + D     
Sbjct: 712 VRPSYVLGGRAMEVVYRREHLEQYLATSGAFASGRPVLIDKYLDGIELEVDALCDGH--- 768

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
            E+ VP    +       S +S  V PA ++P      + R       A+  RG+    F
Sbjct: 769 -EVLVPGIMQHIERAGVHSGDSFAVYPAVELPSVHVDTLVRYTTEIALALAARGLINIQF 827

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +       V+ LE+N +   T     P ++   G    ++   ++
Sbjct: 828 VLHQ--GVVYVLEVNPRASRT----VPFLSKVTGVPMVDVATQIL 866



 Score = 69.0 bits (168), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 51/288 (17%), Positives = 106/288 (36%), Gaps = 37/288 (12%)

Query: 7   GISSEREVSLSSGKACASALEDAGF-------------------KVSQIDV--DRSVGLV 45
           G ++E + S   G     AL + G                        I+      +  +
Sbjct: 21  GQAAEFDYS---GSQALRALREEGIRTIIVNSNPATIMTDEDMADAVYIEPLTVEVLERI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +A  +P+     L G  G +  V      +L+   +    + + A   + D+   K+++ 
Sbjct: 78  IARERPEGLLATLGGQTGLNLAVALAEAGVLDRYGVRLLGTPLEAIRRAEDRQLFKELLL 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G PV  S+        +     + PP +++P       G  +   +  +   + +  +
Sbjct: 138 EIGEPVLESLTAYSVEDALRFAEEVPPPLIVRPAFTLGGTGGGIAFSEDELVTLVQRGIA 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPA 217
            +   Q+L+E+ + G  E+   VM DA+     I   ++ D           +S  V P+
Sbjct: 198 ASPIGQVLVERSLLGWKEIEYEVMRDANDTCITICNIENLDPMGVHT----GDSIVVAPS 253

Query: 218 K-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +    Y+ ++  A    +A+G  G     F  DP S + + +E+N 
Sbjct: 254 QTLSDRDYQMLRSAALKIIRALGIVGGCNIQFALDPRSDQYYVIEVNP 301


>gi|87119094|ref|ZP_01074992.1| Allophanate hydrolase subunit 2 [Marinomonas sp. MED121]
 gi|86165485|gb|EAQ66752.1| Allophanate hydrolase subunit 2 [Marinomonas sp. MED121]
          Length = 1240

 Score = 85.6 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 32/220 (14%), Positives = 75/220 (34%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+    +  E   I +         L   K  +++     GVP+ P    
Sbjct: 77  AIHPGYGFLSENTEFVSQCEQANIAFIGPTSAQMNLFGLKHLAREAAEKAGVPLVPGSPL 136

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQL 166
           +      +   + I  P ++K   GG  +G+        +            ++   D +
Sbjct: 137 LTKQEDAIQWANEIGYPIMLKSTAGGGGIGMQACFNQDEMVGAWESVKRLGENYFSNDGV 196

Query: 167 LIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIY 224
            +E+ + +   +   + GD       +            +  +       PA  +P  + 
Sbjct: 197 FLEKLIQNARHIEVQIFGDGQGQAISLGE-----RDCSAQRRNQKVIEETPAHNLPHAVR 251

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +++   A     ++  R     +F+FD  ++  ++LE+N 
Sbjct: 252 EQLHHTAERLMASVNYRNAGTVEFIFDDDAKAFYFLEVNT 291


>gi|255318471|ref|ZP_05359704.1| urea carboxylase [Acinetobacter radioresistens SK82]
 gi|262378700|ref|ZP_06071857.1| urea carboxylase [Acinetobacter radioresistens SH164]
 gi|255304463|gb|EET83647.1| urea carboxylase [Acinetobacter radioresistens SK82]
 gi|262299985|gb|EEY87897.1| urea carboxylase [Acinetobacter radioresistens SH164]
          Length = 1201

 Score = 85.6 bits (211), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 32/220 (14%), Positives = 80/220 (36%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+     + E   I +             K  ++++     VP+ P   +
Sbjct: 77  AIHPGYGFLSENAEFCNLCEAQGIVFLGPNADQMKAFGLKHTARELAIQANVPLLPGSQL 136

Query: 114 NRFTMDS---QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQL 166
                ++      I  P ++K   GG  +G+ ++   + +    +     + +      L
Sbjct: 137 LADEEEALLEADRIGYPVMLKSTAGGGGIGMRLVWNAEELKDAYVTVSYLAQANFKDAGL 196

Query: 167 LIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIY 224
            +E++V +   +   + GD +  V  +           ++  +       PA  +     
Sbjct: 197 YLEKFVQNARHIEVQIFGDGNGLVLALGE-----RDCSVQRRNQKVIEETPAPHLNDTQR 251

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +Q +A    Q++  R     +F+ D  +++ ++LE+N 
Sbjct: 252 AYIQNVAIQLMQSVNYRSAGTVEFVMDTDTQEFYFLEVNT 291


>gi|71065784|ref|YP_264511.1| putative acetyl-CoA carboxylase, biotin carboxylase [Psychrobacter
           arcticus 273-4]
 gi|71038769|gb|AAZ19077.1| putative acetyl-CoA carboxylase, biotin carboxylase [Psychrobacter
           arcticus 273-4]
          Length = 453

 Score = 85.6 bits (211), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 41/220 (18%), Positives = 83/220 (37%), Gaps = 19/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---S 110
            +H  +G   E+      +E   + +         L  +K+ +   +   GVP  P    
Sbjct: 77  AIHPGYGFLAENAEFAERVEEAGLTFVGPTADHIRLMGNKVSAINAMKKAGVPTVPGSVG 136

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGDQL 166
            +      +    I  P +IK   GG   G+ V+++ + I         ++  W   D +
Sbjct: 137 AVTLHNAEEQARNIGFPLLIKAASGGGGRGMRVVERFEEIIGQVQAAKQEAELWFGDDTV 196

Query: 167 LIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIY 224
            +E+Y+ +   +   V+GD + +   +           L+          PA  IP D+ 
Sbjct: 197 YMERYLQNPRHVEIQVLGDGNGNAIHLY-----DRDCSLQRRHQKVLEEAPAPDIPDDVR 251

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +      A + +  RG    +FLF   + + F++E+N 
Sbjct: 252 QPILDACVKACKLVNYRGAGTFEFLF--ENNEYFFIEMNT 289


>gi|300087163|ref|YP_003757685.1| carbamoyl-phosphate synthase L chain ATP-binding protein
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
 gi|299526896|gb|ADJ25364.1| Carbamoyl-phosphate synthase L chain ATP-binding protein
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
          Length = 469

 Score = 85.6 bits (211), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 36/219 (16%), Positives = 82/219 (37%), Gaps = 18/219 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       E   I +         L+ +K+ +++     GVP+ P    
Sbjct: 77  AIHPGYGFLSENPTFAQACEKAGIAFIGPPARVLELTGNKITAREEAVKAGVPIIPGTGE 136

Query: 114 NRFT----MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGDQ 165
                    D    I  P ++KP  GG  +G+++ + D  +   L      ++ +     
Sbjct: 137 CPADFSALQDELGDIGYPLIVKPAGGGGGIGMVIARNDGDLQRALSSSPEMANKYFGIST 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+Y++    +   ++ D   +V  +   +     +  K             +  +I 
Sbjct: 197 IYIEKYIEKPRHIEFQILADTKGNVIHLGERECSIQRFHSK----VIEEAPSTALTPEIR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
           +++ + A    + IG  G    +F++       ++LE+N
Sbjct: 253 EKMGQAAVDLARGIGYVGAGTIEFIYSE--GNYYFLEVN 289


>gi|157377222|ref|YP_001475822.1| acetyl CoA carboxylase, biotin carboxylase subunit [Shewanella
           sediminis HAW-EB3]
 gi|157319596|gb|ABV38694.1| acetyl CoA carboxylase, biotin carboxylase subunit [Shewanella
           sediminis HAW-EB3]
          Length = 456

 Score = 85.6 bits (211), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 77/222 (34%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+      +E     +         L  DK+ +   +   GVP  P    
Sbjct: 84  AIHPGYGFLSENADFAEQVESSGFVFIGPTPEVIRLMGDKISAIAAMKQAGVPTVPGSDG 143

Query: 111 --ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
                ++        I  P +IK   GG   G+ VIK +  +   +     ++ +    D
Sbjct: 144 SLTDNHQHNKKLAEQIGYPVIIKATAGGGGRGMRVIKGEAELIQAIELTRAEALAAFAND 203

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLD 222
            L +E+Y++    +   V+ D   +               ++          PA  I   
Sbjct: 204 SLYMEKYLETPRHIEIQVLSDGQGNAI-----HLGERDCSMQRKHQKVIEEAPALGIDEQ 258

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
               +  L   A   IG RG+   +FL++    + +++E+N 
Sbjct: 259 TRHTIGELCAKACIEIGYRGVGTFEFLYEA--NRFYFIEMNT 298


>gi|224417769|ref|ZP_03655775.1| biotin carboxylase [Helicobacter canadensis MIT 98-5491]
 gi|253827112|ref|ZP_04869997.1| acetyl-CoA carboxylase [Helicobacter canadensis MIT 98-5491]
 gi|313141310|ref|ZP_07803503.1| biotin carboxylase [Helicobacter canadensis MIT 98-5491]
 gi|253510518|gb|EES89177.1| acetyl-CoA carboxylase [Helicobacter canadensis MIT 98-5491]
 gi|313130341|gb|EFR47958.1| biotin carboxylase [Helicobacter canadensis MIT 98-5491]
          Length = 455

 Score = 85.6 bits (211), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 88/226 (38%), Gaps = 17/226 (7%)

Query: 49  LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
              D  F   +G   E+     I     I +        AL  DK ++K+V+ + GVPV 
Sbjct: 78  FNADAIFPG-YGFLSENQNFVEICNYHNIEFIGPNPEVMALMSDKSKAKEVMKNAGVPVI 136

Query: 109 PS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH-- 162
           P     +      ++    I  P ++K   GG   G+ +++ ++++    L + S     
Sbjct: 137 PGSDGAVKSKEEALELAKEIGYPVILKAAAGGGGRGMRIVQNEENMFNAYLAAESEAISA 196

Query: 163 --GDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK- 218
                + +E+++D    +   ++ D   +V  +           L+          PA  
Sbjct: 197 FGDGTIYMEKFIDKPKHIEVQILADKYGNVLHVGE-----RDCSLQRRHQKLIEESPAPT 251

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +  +  K++   A  A +AI   G    +FL D  ++  +++E+N 
Sbjct: 252 LEAETRKKLLETAITATKAIKYVGAGTYEFLLDN-NQNFYFMEMNT 296


>gi|86607714|ref|YP_476476.1| carbamoyl phosphate synthase large subunit [Synechococcus sp.
           JA-2-3B'a(2-13)]
 gi|86556256|gb|ABD01213.1| carbamoyl-phosphate synthase, large subunit [Synechococcus sp.
           JA-2-3B'a(2-13)]
          Length = 1082

 Score = 85.6 bits (211), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 58/278 (20%), Positives = 95/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D                V  ++   +PD    
Sbjct: 29  SGTQACKALREEGYEVVLVNSNPATIMTDPSMAERTYIEPVTVDFVAKIIERERPDALLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  V    Q ILE   +    +   A   + D+   KQ +   G+ V  S L
Sbjct: 89  TMGGQTALNVAVQLAQQGILEQYGVELIGAKREAIEKAEDRDLFKQAMQRIGLAVPRSGL 148

Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +      Q    I  P +I+P       G  V    +            +   Q+L+E+
Sbjct: 149 AHTLEEAKQIAQEIGYPLIIRPAYTLGGTGGGVAYNQEEFEEICAAGLEASPVSQILVEE 208

Query: 171 YVDG-IELTCGVMGD-ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            V G  E    VM D A   V   ++   D           +S  V PA+ +    Y+ +
Sbjct: 209 SVIGWKEFELEVMRDLADNVVIICSIENMDPMGVHT----GDSITVAPAQTLTDKEYQRL 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  A    + IG   G S   F  +P + +V  +E+N 
Sbjct: 265 RDYAIAIMREIGVETGGSNVQFAVNPANGEVRVIEMNP 302



 Score = 64.8 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/214 (14%), Positives = 88/214 (41%), Gaps = 13/214 (6%)

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKG 135
           P   +   +  ++ D+ R ++++    +    + +      +++    I  P V++P   
Sbjct: 657 PIWGTSPDSIDIAEDRGRFERILRELDIRQPANGIARSVEESLEIARRIGYPVVVRPSYV 716

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAV 194
                + ++  DQ +   +  + + +    +L++Q++ + +E+    + D +  VT   +
Sbjct: 717 LGGRAMEIVYSDQDLQRYMQLAVAVDPDRPVLVDQFLEEAVEVDVDAIADRTGAVTIGGI 776

Query: 195 PKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
            +   +  +    S +S  VLP++ +  ++ + ++       QA+   G+    +     
Sbjct: 777 LE---HIEQAGIHSGDSACVLPSRTLSPEVLRVIREWTVKLAQALKVVGLINVQYAVQK- 832

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287
             +V+ LE N +   T     P ++   G+   +
Sbjct: 833 -GQVYILEANPRASRT----VPFVSKAIGHPLAD 861


>gi|83815447|ref|YP_445070.1| acetyl-CoA carboxylase, biotin carboxylase [Salinibacter ruber DSM
           13855]
 gi|83756841|gb|ABC44954.1| acetyl-CoA carboxylase, biotin carboxylase [Salinibacter ruber DSM
           13855]
          Length = 491

 Score = 85.6 bits (211), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 81/220 (36%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+     I    +I +        +L  +K ++K+ +   GVP+      
Sbjct: 115 AIHPGYGFLAENAEFSQICADNDIEFIGPSAETISLMGEKSKAKEEMHKAGVPIVEGSDG 174

Query: 114 NRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGDQ 165
               +D+       I  P ++K + GG   G+ ++++             ++ +     +
Sbjct: 175 TVGDLDTAYEIASDIGFPVMVKAVAGGGGTGMRLVREADGFERAFNGARSEADAAFGNPE 234

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE++V+    +   V+GD   +V      +        K             +  ++ 
Sbjct: 235 VYIEKFVEKPRHVEIQVLGDGQGNVMHFGERECSIQRRHQKLL----EECPSPVVDEELR 290

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +E+   A    +A+   G    +FL     R  +++E+N 
Sbjct: 291 EEMGAAAIRGAEAVDYEGAGTVEFLV-GADRNFYFMEMNT 329


>gi|332027711|gb|EGI67779.1| Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial
           [Acromyrmex echinatior]
          Length = 691

 Score = 85.6 bits (211), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 39/222 (17%), Positives = 82/222 (36%), Gaps = 20/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+     + +   I +      A      K  SK +++  GVP+      
Sbjct: 94  AVHPGYGFLSENTEFAQLCQKENIIFIGPPATAIRDMGIKNTSKAIMTKAGVPIIEGYHG 153

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS-----SWNHGD 164
           +  T +        I  P +IK ++GG   G+ + +K+      L  +      ++    
Sbjct: 154 DDQTNETLLVEARKIGFPLMIKAVRGGGGKGMRIAQKESDFVEALESARTESEKAFG-DS 212

Query: 165 QLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            +L+E+YV +   +   +  D   +   +           ++          PA  I   
Sbjct: 213 AVLLEKYVTEPRHVEVQIFADKHGNAVFL-----FERDCSVQRRHQKVIEEAPAPGISQQ 267

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +E+   A  A +A+G  G    +F+ D  +    ++E+N 
Sbjct: 268 LRQELGEAAVRAAKAVGYVGAGTVEFIMDRNNHSFHFMEMNT 309


>gi|70731891|ref|YP_261633.1| acetyl-CoA carboxylase biotin carboxylase subunit [Pseudomonas
           fluorescens Pf-5]
 gi|68346190|gb|AAY93796.1| acetyl-CoA carboxylase, biotin carboxylase, putative [Pseudomonas
           fluorescens Pf-5]
          Length = 457

 Score = 85.6 bits (211), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 37/225 (16%), Positives = 83/225 (36%), Gaps = 25/225 (11%)

Query: 56  NVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
           N +H  +G   E+      +      +            DK  +++   + GVPV P   
Sbjct: 79  NAVHPGYGFLSENADFAEAVVEAGAIFVGPSAETIRRMGDKAEARRTAQAAGVPVVPGSP 138

Query: 113 VNRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKD----QSIPLDLLQSSSWNHGD 164
              F +D+       +  P +IK   GG   GI + +      +  P    ++ +     
Sbjct: 139 GELFDLDAALKAAEAVGFPLLIKASAGGGGRGIRLARDAAQLTEEFPRAQREAQTAFGNG 198

Query: 165 QLLIEQYV-DGIELTCGVMGDASLDVT----EIAVPKSDFYSYELKYSSLNSTHVLPAKI 219
            + +E+++     +   V+GD    V     E ++ +     +E               +
Sbjct: 199 AVYLERFIGRARHIEVQVLGDGKHAVHLFERECSLQRRRQKIFE---------EAPSPVL 249

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +  +++   A    +A+G +G    ++L+D  + + F++E+N 
Sbjct: 250 SAEQREQLCSSAVRLTEALGYQGAGTLEYLYDDSTGEFFFIEMNT 294


>gi|304321503|ref|YP_003855146.1| acetyl-CoA carboxylase [Parvularcula bermudensis HTCC2503]
 gi|303300405|gb|ADM10004.1| acetyl-CoA carboxylase [Parvularcula bermudensis HTCC2503]
          Length = 447

 Score = 85.6 bits (211), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 87/220 (39%), Gaps = 18/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     I+    I +         +  DK+ +K+ V   G+P+ P    
Sbjct: 77  AIHPGYGFLSENAKFADIIAAHNITFIGPSADHIRVMGDKITAKETVGRVGIPLVPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGDQ 165
            +      +     I  P ++K   GG   G+ + + +  +   +     ++ S    D 
Sbjct: 137 AVETMEDALKVGKEIGFPLLVKASSGGGGRGMKLAETEADLERAISTAKAEAKSAFGDDA 196

Query: 166 LLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+Y V    +   +  D+  +V  +        S + ++  +    + PA +  +  
Sbjct: 197 VYLEKYLVQPRHIEIQIAADSHGNVIHLGERD---CSLQRRHQKVLEEALSPA-LSPEQR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            E+  +   A + +G  G+   ++L+   + + +++E+N 
Sbjct: 253 AEIGEITRAAIEKLGYLGVGTVEYLY--ENGQFYFIEMNT 290


>gi|116492119|ref|YP_803854.1| carbamoyl-phosphate synthase large subunit [Pediococcus pentosaceus
           ATCC 25745]
 gi|122266417|sp|Q03HB0|CARB_PEDPA RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|116102269|gb|ABJ67412.1| carbamoyl-phosphate synthase large subunit [Pediococcus pentosaceus
           ATCC 25745]
          Length = 1057

 Score = 85.6 bits (211), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 44/282 (15%), Positives = 102/282 (36%), Gaps = 33/282 (11%)

Query: 23  ASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ---- 69
             A+   G++   +         D   S  L    L  +   NV+     E  +VQ    
Sbjct: 578 IQAIRQMGYEAIVVNNNPETVSTDFSMSDKLYFEPLTVEDVMNVIDLEKPEGVIVQFGGQ 637

Query: 70  ---AILELL---EIPYTHSGILASALSMDKMRSKQVVSSCGV--PVCPSILVNRFTMDSQ 121
               + E L    I    + +     + D+    +++ + G+  P   +       +++ 
Sbjct: 638 TAINLAEPLAERGIKIFGTTVENVNRAEDRDEFNKLIQANGIRQPQGRTATTTSGAIEAA 697

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
             I  P +++P        + ++   + +   +  +   +H   +L++QY+ G E    V
Sbjct: 698 ESIGYPVLVRPSYVLGGRAMEIVHAKEELENYMKNAVKVSHNHPVLVDQYLVGKECEVDV 757

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGC 240
           + D    V    +   +           +S  V PA+ +   +  E+ +++    Q++ C
Sbjct: 758 ISDGENVVIPGIMEHIERSGVHS----GDSMTVYPAQTLSQKVQDEIVKVSIKLAQSLEC 813

Query: 241 RGISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277
            G+    F+    + + + +E+N       P M+ V+  P  
Sbjct: 814 IGLMNIQFVVH--NDEAYVIEVNPRASRTVPIMSKVTDLPMA 853



 Score = 69.0 bits (168), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 47/286 (16%), Positives = 102/286 (35%), Gaps = 33/286 (11%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI---------DVD------------RSVGLV 45
           G ++E + S   G     +L++ G++   I         D D            + V  +
Sbjct: 21  GQAAEFDYS---GTQACLSLKELGYQTVLINSNPATIMTDTDIADKVYIEPLTLQFVSQI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           L    PD     L G  G +  ++     IL+ L I    + + A   + D+ R + +++
Sbjct: 78  LRKELPDAILPTLGGQQGLNMAMELSEAGILDELGIELLGTKLDAIDQAEDRERFRALMN 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
               PV  S +       +        P +++P       G  + + +  +        +
Sbjct: 138 DLNEPVPDSGIATTVEEAVSFADQSGYPVIVRPAFTMGGTGGGIAQDEAELRKITANGLT 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   Q+LIEQ + G  E+   VM D+  +   I V   + +     ++  +  +     
Sbjct: 198 LSPVTQVLIEQSIAGLKEIEFEVMRDSVDNA--IVVCNMENFDPVGIHTGDSIVYAPVQT 255

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +     + ++  +    +A+   G        DP   + + +E+N 
Sbjct: 256 LTDREVQMLRDASLSIIRALKIEGGCNVQLALDPAQDRYYVIEVNP 301


>gi|160903135|ref|YP_001568716.1| carbamoyl-phosphate synthase, large subunit [Petrotoga mobilis
           SJ95]
 gi|160360779|gb|ABX32393.1| carbamoyl-phosphate synthase, large subunit [Petrotoga mobilis
           SJ95]
          Length = 1496

 Score = 85.6 bits (211), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 43/233 (18%), Positives = 87/233 (37%), Gaps = 26/233 (11%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYV 129
           LE   I    +      L  D+ R   ++    +       V  F    +    +  P +
Sbjct: 647 LERHGIKILGTSYEHIDLCEDRKRFSLLLKELEINQPRGGYVTSFDEAREIAKRLGFPLL 706

Query: 130 IKPLK--GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS- 186
           ++P    GG S+    +  +  +   L  +   +    +LI++Y++G+E+    + D   
Sbjct: 707 VRPSYVIGGQSIE--KVNSEDELFEYLSHALDLSPNRPVLIDEYIEGVEVEVDAVSDGEN 764

Query: 187 --LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGI 243
             +      + K+  +S        +S  V PAK +     KE+ R      +A+  +G+
Sbjct: 765 VLIPGIMEHIEKAGIHS-------GDSFAVFPAKTLSELEEKEIVRYVEKISKAVKVKGL 817

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
               F+      KV+ +E+N +   T     P ++   G     ++   VE A
Sbjct: 818 INIQFIVKE--GKVYVIEVNPRASRT----VPIISKVTGIP---MIKLAVEIA 861



 Score = 64.4 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 45/314 (14%), Positives = 118/314 (37%), Gaps = 37/314 (11%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQIDVD---------------------RSVGLV 45
           G ++E + S   G     +L++ G KV  ++ +                      ++  +
Sbjct: 21  GQAAEFDYS---GTQACKSLKEEGCKVILVNNNPATIMTDTEIADVVYMENLEMDTLISI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   KPD     L G    + ++Q     I++  +I    + + +  ++  +   K+ + 
Sbjct: 78  IEKEKPDGILGTLGGQTALNLIIQLKDSGIIDKYDIQELGTSVESIKIAESRELFKRKMQ 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
               P+  S+ V+     ++  + +  P +I+P       G      ++ +   +     
Sbjct: 138 EIEEPIAESLTVSTVSEAINFANKVGYPLIIRPAYTLGGTGGGFAYNEEELIEFVENGLK 197

Query: 160 WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK- 218
            +   ++LIE+ + G +     +   S D   I V   + +   +   + +S  V P++ 
Sbjct: 198 KSMMKEVLIERSLLGWKEIEYELVRDSFD-NCITVCNMENFD-PVGIHTGDSIVVAPSQT 255

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278
           +    ++ ++  +    +A+   G     F  +P + +   +E+N  P ++  S     +
Sbjct: 256 LTDQEHQMLRDSSIKIIKALKIEGACNIQFALNPYNEEYRVIEVN--PRLSRSS--ALAS 311

Query: 279 AYAGYSFRELLLWM 292
              GY   ++   +
Sbjct: 312 KATGYPIAKIATKI 325


>gi|332709221|ref|ZP_08429187.1| biotin carboxylase [Lyngbya majuscula 3L]
 gi|332352030|gb|EGJ31604.1| biotin carboxylase [Lyngbya majuscula 3L]
          Length = 448

 Score = 85.6 bits (211), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 81/221 (36%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     I    +I +      A     DK  +K+ +   GVP  P    
Sbjct: 78  AIHPGYGFLSENARFAEICADHQIAFIGPTPEAIRAMGDKSTAKETMQRAGVPTVPGSDG 137

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI-----PLDLLQSSSWNHGD 164
            +   +        I  P +IK   GG   G+ +++ D  +            +++ +G 
Sbjct: 138 LVSSEQEAHAIARQIGYPVMIKATAGGGGRGMRLVQDDSQLIKLFQAAQGEAQAAFGNGG 197

Query: 165 QLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            + IE+++     +   ++ D+  +   +            K             +  ++
Sbjct: 198 -VYIEKFIQRPRHIEIQILADSHGNAIHLGERDCSIQRRHQKLL----EEAPSPVLDPEL 252

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +++   A +A ++I   G+   +FL D    + +++E+N 
Sbjct: 253 REKMGNAAVMAAKSINYVGVGTVEFLLDAS-GEFYFMEMNT 292


>gi|21672998|ref|NP_661063.1| acetyl-CoA carboxylase, biotin carboxylase [Chlorobium tepidum TLS]
 gi|21646061|gb|AAM71405.1| acetyl-CoA carboxylase, biotin carboxylase [Chlorobium tepidum TLS]
          Length = 447

 Score = 85.6 bits (211), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 80/221 (36%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     +     I +            DK  +K  + + GVPV P    
Sbjct: 77  AIHPGYGFLAENADFAEVCSSSNIKFIGPSAEMINKMGDKNTAKSTMIAAGVPVVPGSEG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS-----SSWNHGD 164
            +      +++   I  P +IKP  GG   G+ V+ ++  +  +L  +      ++ +  
Sbjct: 137 LVEDVAHAIETAKKIGYPVIIKPTAGGGGKGMRVVHEESQLEKNLKTAQSEAGMAFGNSG 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            + IE++++    +   ++ D   +V  +            K             +   +
Sbjct: 197 -VYIEKFLENPRHIEIQILADQHGNVVHLGERDCTVQRRHQK----LIEETPSPVVDEAL 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             ++   A  A +AI   G    +FL D      +++E+N 
Sbjct: 252 RTKMGEAAVAAAKAINYEGAGTIEFLLDKHKN-FYFMEMNT 291


>gi|27376098|ref|NP_767627.1| 3-methylcrotonyl-CoA carboxylase subunit alpha [Bradyrhizobium
           japonicum USDA 110]
 gi|27349237|dbj|BAC46252.1| 3-methylcrotonyl-CoA carboxylase alpha subunit [Bradyrhizobium
           japonicum USDA 110]
          Length = 658

 Score = 85.6 bits (211), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 33/215 (15%), Positives = 75/215 (34%), Gaps = 14/215 (6%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI----LVN 114
           +G   E+       +   + +      A     +K  +K+++   GVP  P        +
Sbjct: 91  YGFLAENEDFAQACKDAGLVFIGPSPQAIEAMGNKAGAKEIMRKAGVPCVPGYQGLEQGD 150

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQLLIEQ 170
              +     I  P +IK + GG   G+ ++    S P  L     ++ +      +++E+
Sbjct: 151 EVMLAEARKIGFPVMIKAVAGGGGRGMRLVTDAASFPDALRSARSEAKAAFGDATVILER 210

Query: 171 YV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
            + +   +   V GD   +   +            K             +  ++   +  
Sbjct: 211 AIQNPRHIEIQVFGDNHGNAIHLGERDCSVQRRHQK----LIEEAPSPAVTPELRARMGE 266

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +A  A +A+   G    +FL D    + +++E+N 
Sbjct: 267 VAVAAVKALRYEGAGTLEFLLDAS-GEFYFMEMNT 300


>gi|39935213|ref|NP_947489.1| carbamoyl-phosphate synthase L chain ATP-binding [Rhodopseudomonas
           palustris CGA009]
 gi|39649064|emb|CAE27585.1| possible biotin carboxylase [Rhodopseudomonas palustris CGA009]
          Length = 660

 Score = 85.2 bits (210), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 37/215 (17%), Positives = 76/215 (35%), Gaps = 14/215 (6%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI----LVN 114
           +G   E+    A      + +      + A   +K  +K+++   GVP  P        +
Sbjct: 92  YGFLAENEDFAAACRDAGLVFIGPSAESIAAMGNKAGAKEIMLKAGVPCVPGYQGEDQSD 151

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQLLIEQ 170
              +     I  P +IK + GG   G+ ++K   ++P  L  + S          +++E+
Sbjct: 152 AAMVREAERIGFPIMIKAVAGGGGRGMRLVKDAAALPDALRSARSEAQSAFGDPTVILER 211

Query: 171 YV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
            +     +   V GD       +            K             +   + +++  
Sbjct: 212 AILQPRHIEIQVFGDRYGAGIHLGERDCSVQRRHQK----LIEEAPSPAVSEALREQMGA 267

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +A  A +AIG  G    +FL D      +++E+N 
Sbjct: 268 VAVNAVKAIGYEGAGTLEFLLDAEGN-FYFMEMNT 301


>gi|326468792|gb|EGD92801.1| 3-methylcrotonyl-CoA carboxylase subunit alpha [Trichophyton
           tonsurans CBS 112818]
          Length = 712

 Score = 85.2 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 54/287 (18%), Positives = 97/287 (33%), Gaps = 44/287 (15%)

Query: 13  EVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNV--------------- 57
           E++L  G+         G +V+ +  D       A   P  A+N+               
Sbjct: 48  EIALRVGRTAGQH----GIRVTTLYTDPDAHAQHALSSP-FAYNLGETSAYLDGDRIIEI 102

Query: 58  --------LHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP 106
                   +H  +G   E+           + +      A     DK RSK+++++ GVP
Sbjct: 103 AKREGCKGIHPGYGFLSENAGFAKKCTDAGLIFIGPPPSAIDAMGDKSRSKEIMTAAGVP 162

Query: 107 VCPSILVNRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
             P        ++        I  P +IK +KGG   G+ + +        L  + S   
Sbjct: 163 CVPGYHGTNQDVNFLAAEAEKIKYPVLIKAVKGGGGKGMRIARSAAEFQDQLRSAKSEAK 222

Query: 163 ----GDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
                D +LIE+Y+     +   V  D   +   +            K            
Sbjct: 223 SSFGDDTMLIEKYITTPRHIEVQVFADQHGNSVALGERDCSVQRRHQKVL----EESPAP 278

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +P    K++   A  A  A+G  G    +F+FD  + + F++E+N 
Sbjct: 279 HLPEATRKDLWAKARDAALAVGYEGAGTVEFIFDNDTGEFFFMEMNT 325


>gi|323334643|gb|EGA76017.1| Dur1,2p [Saccharomyces cerevisiae AWRI796]
          Length = 1835

 Score = 85.2 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 29/214 (13%), Positives = 73/214 (34%), Gaps = 12/214 (5%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
           +G   E+           I +             K  ++Q+    GVP+ P  L+     
Sbjct: 713 YGFLSENADFSDACTSAGITFVGPSGDIIRGLGLKHSARQIAQKAGVPLVPGSLLITSVE 772

Query: 119 DSQHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQLLIEQY 171
           +++ +   +  P ++K   GG  +G+  +  ++ I         Q  ++     + +E++
Sbjct: 773 EAKKVAAELEYPVMVKSTAGGGGIGLQKVDSEEDIEHIFETVKHQGETFFGDAGVFLERF 832

Query: 172 VD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
           ++    +   +MGD       +            K             +P      +++ 
Sbjct: 833 IENARHVEVQLMGDGFGKAIALGERDCSLQRRNQK----VIEETPAPNLPEKTRLALRKA 888

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           A      +  +     +F++D    + ++LE+N 
Sbjct: 889 AESLGSLLNYKCAGTVEFIYDEKKDEFYFLEVNT 922


>gi|313245309|emb|CBY40078.1| unnamed protein product [Oikopleura dioica]
          Length = 431

 Score = 85.2 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 78/221 (35%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+     +L    + +      A      K +SK ++   GVP+      
Sbjct: 89  AVHPGYGFLSENAEFADLLAENGVIFIGPSTEAILDMGIKSKSKFIMDDAGVPIIKGYHG 148

Query: 114 NRFT----MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
           ++      +     I  P ++K + GG   G+ +   +      L  +          D+
Sbjct: 149 DQQDDATLLKESKKIGFPVMLKAIMGGGGKGMRICMNEGEFQAQLDSARREALQGFGDDR 208

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           +L+E++V D   +   V GD   D   +           ++          PA  I  D 
Sbjct: 209 MLVEKFVEDPRHVEVQVFGDNYGDAVYLYE-----RDCSVQRRHQKVLEEAPAPGISWDT 263

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +   A  A +A+   G    +F+ D      +++E+N 
Sbjct: 264 RRAIGEAAVRAAKAVNYSGAGTVEFIMDKHEN-FYFMEMNT 303


>gi|326481403|gb|EGE05413.1| methylcrotonoyl-CoA carboxylase subunit alpha [Trichophyton equinum
           CBS 127.97]
          Length = 712

 Score = 85.2 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 54/287 (18%), Positives = 97/287 (33%), Gaps = 44/287 (15%)

Query: 13  EVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNV--------------- 57
           E++L  G+         G +V+ +  D       A   P  A+N+               
Sbjct: 48  EIALRVGRTAGQH----GIRVTTLYTDPDAHAQHALSSP-FAYNLGETSAYLDGDRIIEI 102

Query: 58  --------LHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP 106
                   +H  +G   E+           + +      A     DK RSK+++++ GVP
Sbjct: 103 AKREGCKGIHPGYGFLSENAGFAKKCTDAGLIFIGPPPSAIDAMGDKSRSKEIMTAAGVP 162

Query: 107 VCPSILVNRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
             P        ++        I  P +IK +KGG   G+ + +        L  + S   
Sbjct: 163 CVPGYHGTNQDVNFLAAEAEKIKYPVLIKAVKGGGGKGMRIARSAAEFQDQLRSAKSEAK 222

Query: 163 ----GDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
                D +LIE+Y+     +   V  D   +   +            K            
Sbjct: 223 SSFGDDTMLIEKYITTPRHIEVQVFADQHGNSVALGERDCSVQRRHQKVL----EESPAP 278

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +P    K++   A  A  A+G  G    +F+FD  + + F++E+N 
Sbjct: 279 HLPEATRKDLWAKARDAALAVGYEGAGTVEFIFDNDTGEFFFMEMNT 325


>gi|325283577|ref|YP_004256118.1| acetyl-CoA carboxylase, biotin carboxylase [Deinococcus
           proteolyticus MRP]
 gi|324315386|gb|ADY26501.1| acetyl-CoA carboxylase, biotin carboxylase [Deinococcus
           proteolyticus MRP]
          Length = 445

 Score = 85.2 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 34/219 (15%), Positives = 77/219 (35%), Gaps = 17/219 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+     +     + +      +      K   +++ ++  VP  P   V
Sbjct: 77  AIHPGYGFLAENPDFAEMCRDHGLVFIGPTPESMRELGSKAGGREIAAASRVPTVPGTGV 136

Query: 114 ---NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSWNHGDQL 166
                  + +   I  P ++K   GG   G  VI+ D+ +         ++  +     +
Sbjct: 137 LEDTEAALTAAREIGYPVLLKASAGGGGRGQKVIRSDEEMQKGFSQAQEEARLYFGDPAI 196

Query: 167 LIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
           ++E++++    +   VMGD    V  I            K          P+ +P D+ +
Sbjct: 197 IMEKFLEEFRHVEVQVMGDGQGHVIHIGERDCSIQRRNQKL-----IEEAPSTLPDDLRQ 251

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           E+        + +   G    +F+ D      +++E+N 
Sbjct: 252 EILAAGVRLAKHVNYAGAGTLEFIVD-RDGNYYFMEMNT 289


>gi|261821764|ref|YP_003259870.1| urea carboxylase [Pectobacterium wasabiae WPP163]
 gi|261605777|gb|ACX88263.1| urea carboxylase [Pectobacterium wasabiae WPP163]
          Length = 1204

 Score = 85.2 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 32/204 (15%), Positives = 68/204 (33%), Gaps = 14/204 (6%)

Query: 70  AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---QHLISP 126
           A  E   I +             K R++++ ++ GVP+ P   +     ++      I  
Sbjct: 93  AACEKAGIAFVGPTAQQIGEFGLKHRARELAAAAGVPMTPGTPLLASLEEARVAAEEIGY 152

Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQLLIEQYVD-GIELTCGV 181
           P ++K   GG  +G+       ++             +     + +E+ +D    +   +
Sbjct: 153 PVMLKSTAGGGGIGLTRCADTAALHAAWESVRRLGEQFFSDSGVFLERCIDRARHVEVQI 212

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGC 240
            GD    V  +           L+  +       PA  +P      +   A    + +  
Sbjct: 213 FGDGKGRVVALGE-----RDCSLQRRNQKVVEETPAPHLPDATRAALLASAVKLGELVNY 267

Query: 241 RGISRSDFLFDPLSRKVFWLEINV 264
           R     +F++D      F+LE+N 
Sbjct: 268 RSAGTVEFIYDAERDAFFFLEVNT 291


>gi|197123513|ref|YP_002135464.1| pyruvate carboxylase [Anaeromyxobacter sp. K]
 gi|196173362|gb|ACG74335.1| pyruvate carboxylase [Anaeromyxobacter sp. K]
          Length = 1148

 Score = 85.2 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 79/221 (35%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+       E   I +            DK+  ++   + GVPV P    
Sbjct: 81  AIHPGYGFLSENPEFSEACERAGIAFVGPTSEMQRKLGDKVAGRKAAQAAGVPVVPGTPE 140

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
            IL +   +        P +IK   GG   G+ V +  + +   L+    ++ +      
Sbjct: 141 PILHDEEALIFAKQHGYPIIIKASAGGGGRGMRVARSQKELLEGLVSARSEARAAFGNPA 200

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDI 223
           + +E+Y++    +   V+GD   ++  +            K          P+  +    
Sbjct: 201 VFLERYIERPKHIEVQVLGDHHGELVHLFERDCSIQRRHQK-----VVEFAPSLALTEAQ 255

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +   A    +++  R     +FL DP  R  +++E+N 
Sbjct: 256 REAICGDALKIARSVSYRNAGTVEFLVDPQGRH-YFIEVNP 295


>gi|327301085|ref|XP_003235235.1| 3-methylcrotonyl-CoA carboxylase subunit alpha [Trichophyton rubrum
           CBS 118892]
 gi|326462587|gb|EGD88040.1| 3-methylcrotonyl-CoA carboxylase subunit alpha [Trichophyton rubrum
           CBS 118892]
          Length = 712

 Score = 85.2 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 54/287 (18%), Positives = 97/287 (33%), Gaps = 44/287 (15%)

Query: 13  EVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNV--------------- 57
           E++L  G+         G +V+ +  D       A   P  A+N+               
Sbjct: 48  EIALRVGRTAGQH----GIRVTTLYTDPDAHAQHALSSP-FAYNLGETSAYLDGDRIIEI 102

Query: 58  --------LHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP 106
                   +H  +G   E+           + +      A     DK RSK+++++ GVP
Sbjct: 103 AKREGCKGIHPGYGFLSENAGFAKKCTDAGLIFIGPPPSAIDAMGDKSRSKEIMTAAGVP 162

Query: 107 VCPSILVNRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
             P        ++        I  P +IK +KGG   G+ + +        L  + S   
Sbjct: 163 CVPGYHGTNQDVNFLAAEAEKIKYPVLIKAVKGGGGKGMRIARSAAEFQDQLRSAKSEAK 222

Query: 163 ----GDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
                D +LIE+Y+     +   V  D   +   +            K            
Sbjct: 223 SSFGDDTMLIEKYITTPRHIEVQVFADQHGNSVALGERDCSVQRRHQKVL----EESPAP 278

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +P    K++   A  A  A+G  G    +F+FD  + + F++E+N 
Sbjct: 279 HLPEATRKDLWAKARDAALAVGYEGAGTVEFIFDNDTGEFFFMEMNT 325


>gi|190408639|gb|EDV11904.1| urea amidolyase [Saccharomyces cerevisiae RM11-1a]
 gi|290878226|emb|CBK39285.1| Dur1,2p [Saccharomyces cerevisiae EC1118]
 gi|323356142|gb|EGA87947.1| Dur1,2p [Saccharomyces cerevisiae VL3]
          Length = 1835

 Score = 85.2 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 29/214 (13%), Positives = 73/214 (34%), Gaps = 12/214 (5%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
           +G   E+           I +             K  ++Q+    GVP+ P  L+     
Sbjct: 713 YGFLSENADFSDACTSAGITFVGPSGDIIRGLGLKHSARQIAQKAGVPLVPGSLLITSVE 772

Query: 119 DSQHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQLLIEQY 171
           +++ +   +  P ++K   GG  +G+  +  ++ I         Q  ++     + +E++
Sbjct: 773 EAKKVAAELEYPVMVKSTAGGGGIGLQKVDSEEDIEHIFETVKHQGETFFGDAGVFLERF 832

Query: 172 VD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
           ++    +   +MGD       +            K             +P      +++ 
Sbjct: 833 IENARHVEVQLMGDGFGKAIALGERDCSLQRRNQK----VIEETPAPNLPEKTRLALRKA 888

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           A      +  +     +F++D    + ++LE+N 
Sbjct: 889 AESLGSLLNYKCAGTVEFIYDEKKDEFYFLEVNT 922


>gi|189345747|ref|YP_001942276.1| acetyl-CoA carboxylase, biotin carboxylase [Chlorobium limicola DSM
           245]
 gi|189339894|gb|ACD89297.1| acetyl-CoA carboxylase, biotin carboxylase [Chlorobium limicola DSM
           245]
          Length = 447

 Score = 85.2 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 77/220 (35%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     +   L I +            DK  +K  + + GVPV P    
Sbjct: 77  AIHPGYGFLAENEDFAEVCASLSIKFIGPTARMINQMGDKNTAKATMIAAGVPVVPGSQG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
            +   +  + +      P +IKP  GG   G+ V+ +D  +   L     ++        
Sbjct: 137 LVTDLQEALATAEKTGYPVIIKPTAGGGGKGMRVVHEDSQLDKALKTARNEAEQAFGNSG 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+Y++    +   ++ D   +   +            K             +   + 
Sbjct: 197 VYIEKYLENPRHVEIQILSDQHGNTIHLGERDCTVQRRHQK----LIEETPSPAVDDALR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K +   A  A +AI   G    +FL D   R  +++E+N 
Sbjct: 253 KRMGDAAVAAARAINYEGAGTIEFLLDRH-RNFYFMEMNT 291


>gi|319790507|ref|YP_004152140.1| acetyl-CoA carboxylase, biotin carboxylase [Thermovibrio
           ammonificans HB-1]
 gi|317115009|gb|ADU97499.1| acetyl-CoA carboxylase, biotin carboxylase [Thermovibrio
           ammonificans HB-1]
          Length = 472

 Score = 85.2 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 44/283 (15%), Positives = 97/283 (34%), Gaps = 43/283 (15%)

Query: 19  GKACASALEDAGF---------KVSQIDVDRSVGLVLAHLKPDLAFN------------- 56
                 A ++ G           V+ + V ++    L H  P  A+              
Sbjct: 14  ATRVIRACKELGIKTVAIYSEADVNSLHVKKADEAYLIHGDPVKAYLNYYKIVDIAKRAG 73

Query: 57  --VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS- 110
              +H  +G   E            I +    +    +   K+ SK+++   GVPV    
Sbjct: 74  AEAIHPGYGFLSERADFAEYARKKGIEFIGPSVEHLRIFGSKIESKKLMKELGVPVAEGS 133

Query: 111 ---ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL----DLLQSSSWNHG 163
              I   +   +    I  P +IK   GG   G+ V + ++ +       + ++ +    
Sbjct: 134 EKPINDLQEAKEIAKKIGYPVMIKAAHGGGGRGLRVARNEKELETQFQIAVKEAEAAFGK 193

Query: 164 DQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPL 221
            ++ IE+Y++    +   ++ D   +V              L+        + P+  +  
Sbjct: 194 GEVFIEKYIENPRHIEIQIVADKHGNVV-----HLGERDCSLQRRHQKVLEIAPSPVLTR 248

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              +++ ++   A + IG  G+   +FL D      +++E+N 
Sbjct: 249 RQREKLGKICVEAARKIGYYGVGTWEFLMDKYGN-FYFMEVNP 290


>gi|295704472|ref|YP_003597547.1| putative Phosphoribosylglycinamide synthetase [Bacillus megaterium
           DSM 319]
 gi|294802131|gb|ADF39197.1| putative Phosphoribosylglycinamide synthetase [Bacillus megaterium
           DSM 319]
          Length = 420

 Score = 85.2 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 44/233 (18%), Positives = 91/233 (39%), Gaps = 26/233 (11%)

Query: 71  ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVI 130
           + E L +P         +   +K + ++V+    +       V          +  P V+
Sbjct: 93  LTEELNLP--GLSPFVISNCRNKQKMREVLKDNDLNTPYFKEVENTEELKNLSLPYPVVV 150

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ---------LLIEQYVDGIEL---T 178
           KP  G SS G+      + +   + +    N  D          ++IEQ++DG E    T
Sbjct: 151 KPSNGFSSQGVSRANNKKELIDSIEKVRRVNEEDLSKFTKNKTGMVIEQFIDGPEFAIET 210

Query: 179 CGVMGDA-SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
             V G+   L +      K  F+            ++ PA++  ++++ + + A  A  A
Sbjct: 211 FSVEGEVYVLSIGYKGNSKGPFF--------EEGVYIAPAQLEENVWQSIVQEAARAANA 262

Query: 238 IGCR-GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           +G   G +  +   +P   K + +EI  + G + +S +  +    G ++ EL+
Sbjct: 263 LGIENGPAHIELRLNPA-GKPYVIEIGARIGGSGISHY-IVKESTGINYMELV 313


>gi|168217456|ref|ZP_02643081.1| acetyl-CoA carboxylase, biotin carboxylase [Clostridium perfringens
           NCTC 8239]
 gi|182626216|ref|ZP_02953974.1| acetyl-CoA carboxylase, biotin carboxylase [Clostridium perfringens
           D str. JGS1721]
 gi|177908480|gb|EDT71013.1| acetyl-CoA carboxylase, biotin carboxylase [Clostridium perfringens
           D str. JGS1721]
 gi|182380418|gb|EDT77897.1| acetyl-CoA carboxylase, biotin carboxylase [Clostridium perfringens
           NCTC 8239]
          Length = 450

 Score = 85.2 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 85/221 (38%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  FG   E+     + E   I +      A  L  +K  +++++    VPV P    
Sbjct: 77  AIHPGFGFLSENPRFAKMCEECNIEFIGPNWRAIELMGNKAMAREIMKKADVPVVPGYEG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL----DLLQSSSWNHGDQ 165
            I    F +     I  P ++K   GG   GI ++ K++           ++ +    D+
Sbjct: 137 EIESPEFALKIAKKIGFPVIVKASSGGGGKGIRIVYKEEDFISNYNTAKSEAQANFGDDK 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           + IE++V+    +   ++ D   +                +  +       P+  +  + 
Sbjct: 197 IYIERFVENPKHIEVQLLCDKHGNAL-----HLFERDCSAQRKNQKVLEEAPSSILSDEQ 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             ++ ++A  A +A+    +   +FL D  + + +++E+N 
Sbjct: 252 RDKLGKIAVKAAKAVNYSNVGTIEFLLDK-NGEFYFMEMNT 291


>gi|151946596|gb|EDN64818.1| urea amidolyase [Saccharomyces cerevisiae YJM789]
          Length = 1835

 Score = 85.2 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 29/214 (13%), Positives = 73/214 (34%), Gaps = 12/214 (5%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
           +G   E+           I +             K  ++Q+    GVP+ P  L+     
Sbjct: 713 YGFLSENADFSDACTSAGITFVGPSGDIIRGLGLKHSARQIAQKAGVPLVPGSLLITSVE 772

Query: 119 DSQHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQLLIEQY 171
           +++ +   +  P ++K   GG  +G+  +  ++ I         Q  ++     + +E++
Sbjct: 773 EAKKVAAELEYPVMVKSTAGGGGIGLQKVDSEEDIEHIFETVKHQGETFFGDAGVFLERF 832

Query: 172 VD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
           ++    +   +MGD       +            K             +P      +++ 
Sbjct: 833 IENARHVEVQLMGDGFGKAIALGERDCSLQRRNQK----VIEETPAPNLPEKTRLALRKA 888

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           A      +  +     +F++D    + ++LE+N 
Sbjct: 889 AESLGSLLNYKCAGTVEFIYDEKKDEFYFLEVNT 922


>gi|256393586|ref|YP_003115150.1| carbamoyl-phosphate synthase L chain ATP- binding [Catenulispora
           acidiphila DSM 44928]
 gi|256359812|gb|ACU73309.1| Carbamoyl-phosphate synthase L chain ATP- binding [Catenulispora
           acidiphila DSM 44928]
          Length = 1816

 Score = 85.2 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 44/234 (18%), Positives = 87/234 (37%), Gaps = 14/234 (5%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
           + +   L     D A+ V  G   ED     + + + + +      A     DK+ +K +
Sbjct: 55  KVLEHALLESGADAAW-VGWGFVAEDPAFAELCDRIGVTFIGPDAEAMRQLGDKIGAKLI 113

Query: 100 VSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
               GVPV P     +      +++   I  P ++K   GG   GI VI  +  +     
Sbjct: 114 AEEVGVPVAPWSRGAVETLETAIEAAGQIGYPLMLKATAGGGGRGIRVITNESELVDAYE 173

Query: 156 ----QSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLN 210
               +++       + +E+ V G   +   V+ D       + V          K    +
Sbjct: 174 RTSQEAARAFGSGIVFLERLVTGARHVEVQVIADGQGTAWALGVRDCSIQRRNQKVIEES 233

Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           ++ V    +  +   E++  A      +G RG +  +FL+ P  ++  +LE+N 
Sbjct: 234 ASPV----LSAEQAAELKSSAERLAVRVGYRGAATVEFLYHPGDKQFAFLEVNT 283


>gi|75675928|ref|YP_318349.1| propionyl-coenzyme A carboxylase alpha polypeptide [Nitrobacter
           winogradskyi Nb-255]
 gi|74420798|gb|ABA04997.1| biotin carboxylase / biotin carboxyl carrier protein [Nitrobacter
           winogradskyi Nb-255]
          Length = 671

 Score = 85.2 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 42/222 (18%), Positives = 83/222 (37%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG----EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            +H  +G     +G  +A+ +   I +      A A   DK+ SK V +S GV   P  L
Sbjct: 77  AVHPGYGFLSEREGFPRALAD-AGIVFIGPHPQAIAAMGDKIESKMVAASAGVSTVPGFL 135

Query: 113 ----VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSWNHGD 164
                +R  +     I  P +IK   GG   G+ +      +     L   ++ +    D
Sbjct: 136 GVIEDDRHAVKIAGEIGYPVMIKASAGGGGKGMRIAHSSAEVAEGFNLAKAEAKASFGDD 195

Query: 165 QLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           ++ IE+++ +   +   V+GD   +V  +   +        K          P+ +  +I
Sbjct: 196 RVFIEKFIVEPRHIEIQVLGDKHGNVIHLGERECSIQRRNQK-----VIEEAPSPLLDEI 250

Query: 224 Y-KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             + +   A    +A+        +F      +  ++LE+N 
Sbjct: 251 TRRRMGEQAVALAKAVNYDSAGTVEF-VVGQDKSFYFLEMNT 291


>gi|6319685|ref|NP_009767.1| Dur1,2p [Saccharomyces cerevisiae S288c]
 gi|585072|sp|P32528|DUR1_YEAST RecName: Full=Urea amidolyase; Includes: RecName: Full=Urea
           carboxylase; Includes: RecName: Full=Allophanate
           hydrolase
 gi|536588|emb|CAA85172.1| DUR1,2 [Saccharomyces cerevisiae]
 gi|256273778|gb|EEU08702.1| Dur1,2p [Saccharomyces cerevisiae JAY291]
 gi|285810540|tpg|DAA07325.1| TPA: Dur1,2p [Saccharomyces cerevisiae S288c]
          Length = 1835

 Score = 85.2 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 29/214 (13%), Positives = 73/214 (34%), Gaps = 12/214 (5%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
           +G   E+           I +             K  ++Q+    GVP+ P  L+     
Sbjct: 713 YGFLSENADFSDACTSAGITFVGPSGDIIRGLGLKHSARQIAQKAGVPLVPGSLLITSVE 772

Query: 119 DSQHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQLLIEQY 171
           +++ +   +  P ++K   GG  +G+  +  ++ I         Q  ++     + +E++
Sbjct: 773 EAKKVAAELEYPVMVKSTAGGGGIGLQKVDSEEDIEHIFETVKHQGETFFGDAGVFLERF 832

Query: 172 VD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
           ++    +   +MGD       +            K             +P      +++ 
Sbjct: 833 IENARHVEVQLMGDGFGKAIALGERDCSLQRRNQK----VIEETPAPNLPEKTRLALRKA 888

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           A      +  +     +F++D    + ++LE+N 
Sbjct: 889 AESLGSLLNYKCAGTVEFIYDEKKDEFYFLEVNT 922


>gi|150015961|ref|YP_001308215.1| biotin carboxylase [Clostridium beijerinckii NCIMB 8052]
 gi|149902426|gb|ABR33259.1| acetyl-CoA carboxylase, biotin carboxylase [Clostridium
           beijerinckii NCIMB 8052]
          Length = 450

 Score = 85.2 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 41/220 (18%), Positives = 82/220 (37%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  FG   E+     +     I +         L  +K ++++++ + GVPV P    
Sbjct: 77  AIHPGFGFLSENPKFAKMCRQCNIKFIGPDYETIELMGNKAKAREIMKASGVPVVPGYEG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS----IPLDLLQSSSWNHGDQ 165
            I      ++    I  P +IK   GG   GI V   D+           ++ +    D 
Sbjct: 137 EIRDEAHALEIAKGIGYPIMIKASAGGGGKGIRVAHNDEEFLMGFKTAKTEAKACFGDDS 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           L IE++V     +   ++ D    V  +   +        K      ++V    +  ++ 
Sbjct: 197 LYIEKFVQKPKHIEFQILADEHGHVIHLCERECSMQRKNQKVLEEAPSNV----LTEELR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            ++  +A  A  A+  +     +FLFD      +++E+N 
Sbjct: 253 AKMGEIAKKAALAVDYKNAGTIEFLFD-RDNNFYFMEMNT 291


>gi|168215278|ref|ZP_02640903.1| acetyl-CoA carboxylase, biotin carboxylase [Clostridium perfringens
           CPE str. F4969]
 gi|170713325|gb|EDT25507.1| acetyl-CoA carboxylase, biotin carboxylase [Clostridium perfringens
           CPE str. F4969]
          Length = 450

 Score = 85.2 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 84/221 (38%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  FG   E+     + E   I +      A  L  +K  +++++    VPV P    
Sbjct: 77  AIHPGFGFLSENPRFAKMCEECNIEFIGPNWRAIELMGNKAMAREIMKKADVPVVPGYEG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL----DLLQSSSWNHGDQ 165
            I    F +     I  P ++K   GG   GI ++ K+            ++ +    D+
Sbjct: 137 EIESPEFALKIAKKIGFPVIVKASSGGGGKGIRIVYKEDDFISNYNTAKSEAKANFGDDK 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           + IE++V+    +   ++ D   +                +  +       P+  +  + 
Sbjct: 197 IYIERFVENPKHIEVQLLCDKHGNAL-----HLFERDCSAQRKNQKVLEEAPSSILSDEQ 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             ++ ++A  A +A+    +   +FL D  + + +++E+N 
Sbjct: 252 RDKLGKIAVKAAKAVNYSNVGTIEFLLDK-NGEFYFMEMNT 291


>gi|118150458|ref|NP_001071208.1| hypothetical protein LOC777632 [Danio rerio]
 gi|116487525|gb|AAI25959.1| Zgc:154106 [Danio rerio]
          Length = 711

 Score = 85.2 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 79/221 (35%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       +   I +      A      K  SK ++S+ GVP+      
Sbjct: 111 AVHPGYGFLSENTEFAEQCKQEGIIFIGPPSSAIRDMGIKSTSKHIMSAAGVPIIEGYHG 170

Query: 114 NRFT----MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
           +  +          I  P +IK ++GG   G+ + + +      L  +          D 
Sbjct: 171 DDQSDARLQSEAARIGYPVMIKAVRGGGGKGMRIAQSEAEFHEQLESARREARKSFNDDV 230

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDI 223
           +LIE++V+    +   V GD   D   +           ++          P   I  ++
Sbjct: 231 MLIEKFVENPRHVEVQVFGDQYGDAVYL-----FERDCSVQRRHQKIIEEAPGPGISPEV 285

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +++   A  A +A+   G    +F+ D      +++E+N 
Sbjct: 286 RRKLGEAAVRAAKAVNYVGAGTVEFIMDAQHN-FYFMEMNT 325


>gi|322788220|gb|EFZ14002.1| hypothetical protein SINV_14534 [Solenopsis invicta]
          Length = 693

 Score = 85.2 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 81/221 (36%), Gaps = 18/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H  +G   E+     + +   I +      A      K  SK ++++ GVP+      
Sbjct: 96  AIHPGYGFLSENTEFAELCQKENIIFIGPPASAIRDMGIKNTSKAIMTNAGVPIIEGYHG 155

Query: 113 ---VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
               N   +     I  P +IK ++GG   G+ + +K+      L  + + +        
Sbjct: 156 EDQTNETLLAEAKKIGFPLMIKAVRGGGGKGMRIAQKESDFVEALESARTESEKSFGDSA 215

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           +L+E+YV +   +   +  D   +   +           ++          PA  I   +
Sbjct: 216 VLLEKYVAEPRHVEVQIFADKHGNAVYL-----FERDCSVQRRHQKVIEEAPAPGISQQL 270

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +E+   A  A +A+G  G    +F+ D       ++E+N 
Sbjct: 271 RQEIGEAAVRAAKAVGYVGAGTVEFIMDRNDHSFHFMEMNT 311


>gi|319892512|ref|YP_004149387.1| Biotin carboxylase of acetyl-CoA carboxylase [Staphylococcus
           pseudintermedius HKU10-03]
 gi|317162208|gb|ADV05751.1| Biotin carboxylase of acetyl-CoA carboxylase [Staphylococcus
           pseudintermedius HKU10-03]
 gi|323464386|gb|ADX76539.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Staphylococcus
           pseudintermedius ED99]
          Length = 451

 Score = 85.2 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 33/216 (15%), Positives = 81/216 (37%), Gaps = 15/216 (6%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVN 114
           +G   E+G    + E +++ +      +      K  +K+ +    VPV P     +   
Sbjct: 81  YGFLAENGDFAELCEAVQLKFIGPSYESIQKMGIKDIAKEEMKRANVPVVPGSEGLVHTI 140

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP-----LDLLQSSSWNHGDQLLIE 169
              + + + I  P +IK   GG   GI + + ++ +            +++ +G   L E
Sbjct: 141 EDAIQTANSIGYPVIIKATAGGGGKGIRIARNEEELINGYKMTQQEAETAFGNGGLYL-E 199

Query: 170 QYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           ++++    +   ++GD   +V  +            +             +  +  KE+ 
Sbjct: 200 KFIENFRHIEIQILGDEHGNVIHLGERDCTI----QRRMQKLVEESPSPILTEEKRKEMG 255

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             A  A +A+        +F++D    + +++E+N 
Sbjct: 256 DAAVRAAKAVNYFNAGTIEFIYDLDEDQFYFMEMNT 291


>gi|227502802|ref|ZP_03932851.1| pyruvate carboxylase [Corynebacterium accolens ATCC 49725]
 gi|227076532|gb|EEI14495.1| pyruvate carboxylase [Corynebacterium accolens ATCC 49725]
          Length = 1159

 Score = 85.2 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 36/240 (15%), Positives = 80/240 (33%), Gaps = 19/240 (7%)

Query: 35  QIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKM 94
            +D+   +       + D  +   +G   E   +    E   I +         L+ DK 
Sbjct: 84  YLDI-EEIIRAAKKSEADAIYPG-YGFLSERADLARACEDNGIKFIGPTPGTLDLTGDKS 141

Query: 95  RSKQVVSSCGVPVC----PSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150
            +       G+P      P+  +++   D+    S P  +K + GG   G+  ++ +  +
Sbjct: 142 AAVNAAKEAGLPTLQDSEPTTDIDKLVADAGD-FSFPVFVKAVSGGGGRGMRYVESESEL 200

Query: 151 -----PLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205
                       +++  G   L    ++   +   V+ D+  +V              ++
Sbjct: 201 RERAAEASREAEAAFGDGSVYLETAVINPQHIEVQVLADSQGNVI-----HLFERDCSVQ 255

Query: 206 YSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
                   + PA  +  ++ + + + A    + I   G    +FL D     VF  E+N 
Sbjct: 256 RRHQKVVEIAPAPSLDPELRERICQDAVNFCEHINYEGAGTVEFLVDERGNHVFI-EMNP 314


>gi|166364412|ref|YP_001656685.1| acetyl-CoA carboxylase biotin carboxylase subunit [Microcystis
           aeruginosa NIES-843]
 gi|166086785|dbj|BAG01493.1| biotin carboxylase [Microcystis aeruginosa NIES-843]
          Length = 448

 Score = 85.2 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 75/220 (34%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     I    ++ +      A     DK  +K+ +   GVP  P    
Sbjct: 78  AIHPGYGFLAENARFAEICADHQLTFIGPSPSAILAMGDKSTAKKTMQKAGVPTIPGSGG 137

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS----IPLDLLQSSSWNHGDQ 165
            I            I  P +IK   GG   G+ ++K        +     ++ +      
Sbjct: 138 LITSEAEAKRIADDIGYPVLIKATAGGGGRGMRLVKSADELGNMLKAAQGEAEAAFGNSG 197

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E++++    +   ++ D+  +V  +            K             +   + 
Sbjct: 198 VYLEKFIECPRHIEFQILADSHGNVIHLGERDCSIQRRHQKLL----EEAPSPFLTPHLR 253

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            ++   A  A ++I   G+   +FL D      +++E+N 
Sbjct: 254 SKMGNAAVKAAKSINYVGVGTVEFLVDKHGN-FYFMEMNT 292


>gi|56750186|ref|YP_170887.1| acetyl-CoA carboxylase biotin carboxylase subunit [Synechococcus
           elongatus PCC 6301]
 gi|81300188|ref|YP_400396.1| acetyl-CoA carboxylase biotin carboxylase subunit [Synechococcus
           elongatus PCC 7942]
 gi|1399818|gb|AAB88214.1| biotin carboxylase [Synechococcus elongatus PCC 7942]
 gi|56685145|dbj|BAD78367.1| biotin carboxylase [Synechococcus elongatus PCC 6301]
 gi|81169069|gb|ABB57409.1| acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha /
           biotin carboxylase [Synechococcus elongatus PCC 7942]
          Length = 453

 Score = 85.2 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 76/220 (34%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     I     + +      +     DK  +K+ +   GVP  P    
Sbjct: 78  AIHPGYGFLAENARFAEICADHHLTFIGPSPDSIRAMGDKSTAKETMQRVGVPTIPGSDG 137

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSWNHGDQ 165
            +            I  P +IK   GG   G+ ++++   +         ++ +      
Sbjct: 138 LLTDVDSAAKVAAEIGYPVMIKATAGGGGRGMRLVREPADLEKLFLAAQGEAEAAFGNPG 197

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           L +E+++D    +   ++ DA  +V  +            K             +  D+ 
Sbjct: 198 LYLEKFIDRPRHVEFQILADAYGNVVHLGERDCSIQRRHQKLL----EEAPSPALSADLR 253

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +++   A    QAIG  G    +FL D      +++E+N 
Sbjct: 254 QKMGDAAVKVAQAIGYIGAGTVEFLVDATGN-FYFMEMNT 292


>gi|224495957|ref|NP_001139085.1| hypothetical protein LOC792190 [Danio rerio]
 gi|213627520|gb|AAI71500.1| LOC792190 protein [Danio rerio]
          Length = 711

 Score = 85.2 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 79/221 (35%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       +   I +      A      K  SK ++S+ GVP+      
Sbjct: 111 AVHPGYGFLSENTEFAEQCKQEGIIFIGPPSSAIRDMGIKSTSKHIMSAAGVPIIEGYHG 170

Query: 114 NRFT----MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
           +  +          I  P +IK ++GG   G+ + + +      L  +          D 
Sbjct: 171 DDQSDARLQSEAARIGYPVMIKAVRGGGGKGMRIAQSEAEFHEQLESARREARKSFNDDV 230

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDI 223
           +LIE++V+    +   V GD   D   +           ++          P   I  ++
Sbjct: 231 MLIEKFVENPRHVEVQVFGDQYGDAVYL-----FERDCSVQRRHQKIIEEAPGPGISPEV 285

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +++   A  A +A+   G    +F+ D      +++E+N 
Sbjct: 286 RRKLGEAAVRAAKAVNYVGAGTVEFIMDAQHN-FYFMEMNT 325


>gi|260905530|ref|ZP_05913852.1| acetyl-/propionyl-coenzyme A carboxylase alpha chain
           [Brevibacterium linens BL2]
          Length = 696

 Score = 85.2 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 79/221 (35%), Gaps = 17/221 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+       E   I +   G  A     DK+ +K  VS  GVP+ P    
Sbjct: 77  AIHPGYGFLSENADFSDACEEAGIVFLGPGAEAIRTMGDKITAKNAVSQRGVPLVPGTKD 136

Query: 112 --LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
             + N   + +   I  P +IKP  GG   G+  + +   +   L  +          D 
Sbjct: 137 AAMSNESLVTAADDIGFPVLIKPSAGGGGKGMHAVFEPSGLATALDTARREAASSFGDDT 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           L +E+ V     +   VM DA  +V  +   +        K           A +     
Sbjct: 197 LFLERLVATPRHIEVQVMADAHGNVIHLGERECSLQRRHQK----VIEEAPSALLDEATR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLS-RKVFWLEINV 264
             + + A    +++G RG    +F+       + F++E+N 
Sbjct: 253 ARIGQAACETAKSVGYRGAGTVEFIVGADRPDEFFFMEMNT 293


>gi|113678532|ref|NP_001038380.1| hypothetical protein LOC559969 [Danio rerio]
 gi|94732265|emb|CAK11001.1| novel protein similar to vertebrate methylcrotonoyl-Coenzyme A
           carboxylase 1 (alpha) (MCCC1) [Danio rerio]
          Length = 711

 Score = 85.2 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 79/221 (35%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       +   I +      A      K  SK ++S+ GVP+      
Sbjct: 111 AVHPGYGFLSENTEFAEQCKQEGIIFIGPPSSAIRDMGIKSTSKHIMSAAGVPIIEGYHG 170

Query: 114 NRFT----MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
           +  +          I  P +IK ++GG   G+ + + +      L  +          D 
Sbjct: 171 DDQSDARLQSEAARIGYPVMIKAVRGGGGKGMRIAQSEAEFHEQLESARREARKSFNDDV 230

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDI 223
           +LIE++V+    +   V GD   D   +           ++          P   I  ++
Sbjct: 231 MLIEKFVENPRHVEVQVFGDQYGDAVYL-----FERDCSVQRRHQKIIEEAPGPGISPEV 285

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +++   A  A +A+   G    +F+ D      +++E+N 
Sbjct: 286 RRKLGEAAVRAAKAVNYVGAGTVEFIMDAQHN-FYFMEMNT 325


>gi|325291118|ref|YP_004267299.1| acetyl-CoA carboxylase, biotin carboxylase [Syntrophobotulus
           glycolicus DSM 8271]
 gi|324966519|gb|ADY57298.1| acetyl-CoA carboxylase, biotin carboxylase [Syntrophobotulus
           glycolicus DSM 8271]
          Length = 447

 Score = 85.2 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 81/220 (36%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     + +   I +    +    +  +K R++Q +   GVPV P    
Sbjct: 77  AIHPGYGFLAENSKFAGMCKECRITFIGPDLETIEMMGNKSRARQTMMKAGVPVVPGSEG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
            +  +         I  P ++K   GG   GI ++ +   +      + +        D 
Sbjct: 137 LVHDDEHAEAEADRIGYPVMLKASAGGGGKGIRIVWEKGDLQKAFATAKTEAMVNFGDDS 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E++++    +   ++ D   +V  +            K           A +  D+ 
Sbjct: 197 MYLEKFIEKPRHIEFQILADHHGNVIHLGERDCSIQRRNQK----VIEEAPSAALTADLR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K +   A  A +A+G +     +FL D    + +++E+N 
Sbjct: 253 KRMGDAAVNAAKAVGYKNAGTIEFLLDVH-GQFYFMEMNT 291


>gi|159030646|emb|CAO88316.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 448

 Score = 85.2 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 75/220 (34%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     I    ++ +      A     DK  +K+ +   GVP  P    
Sbjct: 78  AIHPGYGFLAENARFAEICADHQLTFIGPSPSAILAMGDKSTAKKTMQKAGVPTIPGSGG 137

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS----IPLDLLQSSSWNHGDQ 165
            I            I  P +IK   GG   G+ ++K        +     ++ +      
Sbjct: 138 LITSEAEAKRIADDIGYPVLIKATAGGGGRGMRLVKSADELGNMLKAAQGEAEAAFGNSG 197

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E++++    +   ++ D+  +V  +            K             +   + 
Sbjct: 198 VYLEKFIECPRHIEFQILADSHGNVIHLGERDCSIQRRHQKLL----EEAPSPFLTPHLR 253

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            ++   A  A ++I   G+   +FL D      +++E+N 
Sbjct: 254 SKMGNAAVKAAKSINYVGVGTVEFLVDKHGN-FYFMEMNT 292


>gi|288560104|ref|YP_003423590.1| pyruvate carboxylase subunit A PycA [Methanobrevibacter ruminantium
           M1]
 gi|288542814|gb|ADC46698.1| pyruvate carboxylase subunit A PycA [Methanobrevibacter ruminantium
           M1]
          Length = 497

 Score = 85.2 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 76/220 (34%), Gaps = 18/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV----CP 109
            +H  +G   E+  +    E   I              DK+ SKQ++   GVPV      
Sbjct: 77  AIHPGYGFLAENPELGRQCEKNGIKLIGPKGEHIEKMGDKITSKQLMKEAGVPVIEGTPE 136

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ----SSSWNHGDQ 165
            I       +    I  P +IK   GG  +G+  +  ++ +   L      +        
Sbjct: 137 GIDDVEEAKEIAEAIGYPVIIKASAGGGGIGMRAVYSEEELVRALEATQSVALKNFGDAT 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+Y++    +   ++ D   +   +   +        K             +  ++ 
Sbjct: 197 VFIEKYLEKPRHIEFQILADEYGNTIHVGDRECSIQRRHQKLL----EEAPSPIMTEELR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +   A  A + IG       +FL+D  +   ++LE+N 
Sbjct: 253 ERMGESAVKAAEYIGYNSAGTVEFLYD--NGDYYFLEMNT 290


>gi|251796812|ref|YP_003011543.1| urea carboxylase [Paenibacillus sp. JDR-2]
 gi|247544438|gb|ACT01457.1| urea carboxylase [Paenibacillus sp. JDR-2]
          Length = 1215

 Score = 85.2 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 41/257 (15%), Positives = 93/257 (36%), Gaps = 32/257 (12%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+           I +             K  ++++     VP+ P   +
Sbjct: 77  AIHPGYGFLSENADFARACRENGIVFIGPTPEQMEAFGLKHSARELAEKANVPLLPGTPL 136

Query: 114 NRFTMDS---QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQL 166
                ++      I  P ++K   GG  +G+ V + ++++          + +      +
Sbjct: 137 LTQLDEAVAHAAEIGYPVILKSTAGGGGIGMRVCEDEEALRAAFDSVRHLAEANFKNGGM 196

Query: 167 LIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIY 224
            +E+Y+     +   + G+ + +V  +           ++  +       PA + P ++ 
Sbjct: 197 FLEKYIAKARHVEVQIFGNGNGEVVALGE-----RDCSVQRRNQKVVEESPAPQFPEEVR 251

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
            E+   A       G R     +FL+DP S K ++LE+N             +    G +
Sbjct: 252 TEILACAKRLAAEAGYRSAGTVEFLYDPSSFKFYFLEVNT-----------RLQVEHGVT 300

Query: 285 FR----ELLLWMVEDAS 297
                 +L+ WMV++A+
Sbjct: 301 EEVLGLDLVEWMVKEAA 317


>gi|170734926|ref|YP_001774040.1| urea carboxylase [Burkholderia cenocepacia MC0-3]
 gi|169820964|gb|ACA95545.1| urea carboxylase [Burkholderia cenocepacia MC0-3]
          Length = 1205

 Score = 85.2 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 30/220 (13%), Positives = 73/220 (33%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E        E   + +             K  ++++ ++ GV + P   +
Sbjct: 78  AVHPGYGFLSEHAGFADACEAAGLRFIGPRGDHMRAFGLKHTARELAAAHGVALLPGTGL 137

Query: 114 NRF---TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-----SSSWNHGDQ 165
                  +     I  P ++K   GG  +G+ + +    +           ++++ H   
Sbjct: 138 LDDVATALAEADAIGYPVMLKSTAGGGGIGMSLCRDAAQLGAAFESVVRLGAANFAHAG- 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E++V+    +   + GD       +            K             +     
Sbjct: 197 VYLEKFVEHARHIEVQIFGDGRGGAIALGERDCSVQRRNQK----VIEETPAPDLSAAER 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +   A    +A+G       +F+FD  +R+ ++LE+N 
Sbjct: 253 DALHASAVRLARAVGYASAGTVEFVFDASTRQFYFLEVNT 292


>gi|107028307|ref|YP_625402.1| allophanate hydrolase subunit 2 [Burkholderia cenocepacia AU 1054]
 gi|116686302|ref|YP_839549.1| biotin carboxylation region [Burkholderia cenocepacia HI2424]
 gi|105897471|gb|ABF80429.1| Allophanate hydrolase subunit 2 [Burkholderia cenocepacia AU 1054]
 gi|116652017|gb|ABK12656.1| Biotin carboxylation region [Burkholderia cenocepacia HI2424]
          Length = 1205

 Score = 85.2 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 30/220 (13%), Positives = 73/220 (33%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E        E   + +             K  ++++ ++ GV + P   +
Sbjct: 78  AVHPGYGFLSEHAGFADACEAAGLRFIGPRGDHMRAFGLKHTARELAAAHGVALLPGTGL 137

Query: 114 NRF---TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-----SSSWNHGDQ 165
                  +     I  P ++K   GG  +G+ + +    +           ++++ H   
Sbjct: 138 LDDVATALAEADAIGYPVMLKSTAGGGGIGMSLCRDAAQLGAAFESVVRLGAANFAHAG- 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E++V+    +   + GD       +            K             +     
Sbjct: 197 VYLEKFVEHARHIEVQIFGDGRGGAIALGERDCSVQRRNQK----VIEETPAPDLSAAER 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +   A    +A+G       +F+FD  +R+ ++LE+N 
Sbjct: 253 DALHASAVRLARAVGYASAGTVEFVFDASTRQFYFLEVNT 292


>gi|291484034|dbj|BAI85109.1| pyruvate carboxylase [Bacillus subtilis subsp. natto BEST195]
          Length = 1148

 Score = 85.2 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 34/243 (13%), Positives = 88/243 (36%), Gaps = 21/243 (8%)

Query: 35  QIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSM 91
            ID    +  ++   K +   + +H  +G   E+       E   I +         +  
Sbjct: 61  PIDAYLDIEGIIDIAKRNKV-DAIHPGYGFLSENIHFARRCEEEGIVFIGPKSEHLDMFG 119

Query: 92  DKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI----SPPYVIKPLKGGSSLGIIVIKKD 147
           DK+++++     G+PV P       T+++          P +IK   GG   G+ +++ +
Sbjct: 120 DKVKAREQAEKAGIPVIPGSDGPAETLEAVEQFGQANGYPIIIKASLGGGGRGMRIVRSE 179

Query: 148 QSIPLDLL----QSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSY 202
             +         ++ +    D++ +E+ ++    +   V+GD   +V             
Sbjct: 180 SEVKEAYERAKSEAKAAFGNDEVYVEKLIENPKHIEVQVIGDKQGNVV-----HLFERDC 234

Query: 203 ELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
            ++        V P   +  ++  ++   A    + +        +FL    + + +++E
Sbjct: 235 SVQRRHQKVIEVAPSVSLSPELRDQICEAAVALAKNVNYINAGTVEFLV--ANNEFYFIE 292

Query: 262 INV 264
           +N 
Sbjct: 293 VNP 295


>gi|329962783|ref|ZP_08300684.1| ATP-grasp domain protein [Bacteroides fluxus YIT 12057]
 gi|328529438|gb|EGF56346.1| ATP-grasp domain protein [Bacteroides fluxus YIT 12057]
          Length = 371

 Score = 85.2 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 29/150 (19%), Positives = 61/150 (40%), Gaps = 10/150 (6%)

Query: 92  DKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
           +K   ++ +++ G+     I+V+         I  P ++KP+  G S G+  +   + + 
Sbjct: 102 NKFTMREALNAAGISNPQYIIVSEVEELDSVNIPFPCIVKPVDSGGSQGVTKVGSLEEVK 161

Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV---TEIAVPKSDFYSYELKYSS 208
              +++  ++   +++IEQY+DG E +   +      V       V     Y  EL    
Sbjct: 162 AAFIRALDYSREGKVIIEQYIDGREFSVEYLSFNGRHVNIQITDKVTSGAPYFVEL---- 217

Query: 209 LNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
               H  PA +  +  + +  L   A  A+
Sbjct: 218 ---QHHQPANLTDEQRQRICSLVESALTAL 244


>gi|321315247|ref|YP_004207534.1| pyruvate carboxylase [Bacillus subtilis BSn5]
 gi|320021521|gb|ADV96507.1| pyruvate carboxylase [Bacillus subtilis BSn5]
          Length = 1148

 Score = 85.2 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 34/243 (13%), Positives = 88/243 (36%), Gaps = 21/243 (8%)

Query: 35  QIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSM 91
            ID    +  ++   K +   + +H  +G   E+       E   I +         +  
Sbjct: 61  PIDAYLDIEGIIDIAKRNKV-DAIHPGYGFLSENIHFARRCEEEGIVFIGPKSEHLDMFG 119

Query: 92  DKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI----SPPYVIKPLKGGSSLGIIVIKKD 147
           DK+++++     G+PV P       T+++          P +IK   GG   G+ +++ +
Sbjct: 120 DKVKAREQAEKAGIPVIPGSDGPAETLEAVEQFGQANGYPIIIKASLGGGGRGMRIVRSE 179

Query: 148 QSIPLDLL----QSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSY 202
             +         ++ +    D++ +E+ ++    +   V+GD   +V             
Sbjct: 180 SEVKEAYERAKSEAKAAFGNDEVYVEKLIENPKHIEVQVIGDKQGNVV-----HLFERDC 234

Query: 203 ELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
            ++        V P   +  ++  ++   A    + +        +FL    + + +++E
Sbjct: 235 SVQRRHQKVIEVAPSVSLSPELRDQICEAAVALAKNVNYINAGTVEFLV--ANNEFYFIE 292

Query: 262 INV 264
           +N 
Sbjct: 293 VNP 295


>gi|113867270|ref|YP_725759.1| pyruvate carboxylase [Ralstonia eutropha H16]
 gi|113526046|emb|CAJ92391.1| pyruvate carboxylase [Ralstonia eutropha H16]
          Length = 1167

 Score = 85.2 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 44/246 (17%), Positives = 91/246 (36%), Gaps = 25/246 (10%)

Query: 33  VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLV-QAILELLEIPYTHSGILASA 88
            + +D+D  +  +    K D     +H  +G   E+    QA+++   I +         
Sbjct: 63  AAYLDID-DILRIARQAKVD----AIHPGYGFLSENPDFAQAVID-AGIRWIGPSPEVMR 116

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSLGIIVI 144
              +K+ ++      GVPV P+       +D+       I  P ++K   GG   G+ V+
Sbjct: 117 KLGNKVAARNAAIDAGVPVMPATDPLPHDLDTCKRLAAGIGYPLMLKASWGGGGRGMRVL 176

Query: 145 KKDQSIPLDLLQSSSWNH----GDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDF 199
           +++Q +   L  +          D++ +E+ V     +   V+GD   ++  +       
Sbjct: 177 EREQDLEGALAAARREALAAFGNDEVYVEKLVRNARHVEVQVLGDTHGNLVHLYERDCTV 236

Query: 200 YSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
                K          PA  +       +   A    +A+G       +FL D  S + +
Sbjct: 237 QRRNQK-----VVERAPAPYLDDAGRAALCESALRLMRAVGYTHAGTVEFLMDADSGQFY 291

Query: 259 WLEINV 264
           ++E+N 
Sbjct: 292 FIEVNP 297


>gi|16078550|ref|NP_389369.1| pyruvate carboxylase [Bacillus subtilis subsp. subtilis str. 168]
 gi|221309356|ref|ZP_03591203.1| pyruvate carboxylase [Bacillus subtilis subsp. subtilis str. 168]
 gi|221313683|ref|ZP_03595488.1| pyruvate carboxylase [Bacillus subtilis subsp. subtilis str. NCIB
           3610]
 gi|221318605|ref|ZP_03599899.1| pyruvate carboxylase [Bacillus subtilis subsp. subtilis str. JH642]
 gi|221322879|ref|ZP_03604173.1| pyruvate carboxylase [Bacillus subtilis subsp. subtilis str. SMY]
 gi|46397656|sp|Q9KWU4|PYC_BACSU RecName: Full=Pyruvate carboxylase; AltName: Full=Pyruvic
           carboxylase; Short=PYC
 gi|2633857|emb|CAB13359.1| pyruvate carboxylase [Bacillus subtilis subsp. subtilis str. 168]
          Length = 1148

 Score = 85.2 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 34/243 (13%), Positives = 88/243 (36%), Gaps = 21/243 (8%)

Query: 35  QIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSM 91
            ID    +  ++   K +   + +H  +G   E+       E   I +         +  
Sbjct: 61  PIDAYLDIEGIIDIAKRNKV-DAIHPGYGFLSENIHFARRCEEEGIVFIGPKSEHLDMFG 119

Query: 92  DKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI----SPPYVIKPLKGGSSLGIIVIKKD 147
           DK+++++     G+PV P       T+++          P +IK   GG   G+ +++ +
Sbjct: 120 DKVKAREQAEKAGIPVIPGSDGPAETLEAVEQFGQANGYPIIIKASLGGGGRGMRIVRSE 179

Query: 148 QSIPLDLL----QSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSY 202
             +         ++ +    D++ +E+ ++    +   V+GD   +V             
Sbjct: 180 SEVKEAYERAKSEAKAAFGNDEVYVEKLIENPKHIEVQVIGDKQGNVV-----HLFERDC 234

Query: 203 ELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
            ++        V P   +  ++  ++   A    + +        +FL    + + +++E
Sbjct: 235 SVQRRHQKVIEVAPSVSLSPELRDQICEAAVALAKNVNYINAGTVEFLV--ANNEFYFIE 292

Query: 262 INV 264
           +N 
Sbjct: 293 VNP 295


>gi|323442810|gb|EGB00435.1| acetyl-CoA biotin carboxylase [Staphylococcus aureus O46]
          Length = 453

 Score = 85.2 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 43/220 (19%), Positives = 80/220 (36%), Gaps = 18/220 (8%)

Query: 56  NVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
           N +H  +G   E       +E   IP+         +  DK+ ++Q V   GVPV P   
Sbjct: 75  NAIHPGYGFLSESTKFAQTVEEQGIPFIGPTKKTMEMMGDKITARQTVHHAGVPVIPGSN 134

Query: 111 --ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS----WNHGD 164
             +            I  P VIK   GG   GI ++KK + +     ++ S    +   D
Sbjct: 135 GAVNHVSEIEKLAKDIGYPVVIKAASGGGGKGIRIVKKAEDLEKAFKEAKSEGKKYFDDD 194

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           ++ +E ++     +   VMGD   +   +            + +         A +  + 
Sbjct: 195 RVYVEAFIPVAKHVEVQVMGDGQDNYVHLGERDCSV----QRKNQKLIEESPCASLTEER 250

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            +++   A    +A   R     +FL    +   +++EIN
Sbjct: 251 RQQICNDAVKVARAANYRSAGTIEFLVTDTAH--YFIEIN 288


>gi|294142553|ref|YP_003558531.1| biotin carboxylase [Shewanella violacea DSS12]
 gi|293329022|dbj|BAJ03753.1| biotin carboxylase [Shewanella violacea DSS12]
          Length = 452

 Score = 85.2 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 81/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+      +E     +         L  DK+ +   + + GVP  P    
Sbjct: 79  AIHPGYGFLAENADFAEQVEACGFSFIGPTAAVIRLMGDKVSAISAMKATGVPTIPGSDA 138

Query: 111 ILVNRFTMDS--QHLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGD 164
           IL     ++    + I  P +IK   GG   G+ +++ +  +     L   ++ +     
Sbjct: 139 ILSTDSQLNKRIANKIGYPVIIKATAGGGGRGMRLVRDESELIQTIELTQAEAKAAFANG 198

Query: 165 QLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLD 222
            + +E+Y+     +   V+ D   +   +            K          PA  I  D
Sbjct: 199 DVYMEKYLQTPRHIEIQVLSDGQGNAIHLGERDCSMQRRHQK-----VIEEAPALGIDAD 253

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +E+  L   A   IG RG    +FL++    + +++E+N 
Sbjct: 254 TRREIGALCVKACVDIGYRGAGTFEFLYEA--GRFYFIEMNT 293


>gi|212695461|ref|ZP_03303589.1| hypothetical protein BACDOR_05015 [Bacteroides dorei DSM 17855]
 gi|212661986|gb|EEB22560.1| hypothetical protein BACDOR_05015 [Bacteroides dorei DSM 17855]
          Length = 429

 Score = 85.2 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 40/223 (17%), Positives = 86/223 (38%), Gaps = 23/223 (10%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       +   I +            DK+ +++ + + GVPV P    
Sbjct: 3   AIHPGYGFLSENADFARRCKEEGIIFIGPSAETMEAMGDKIAARKRMIAAGVPVVPGTEQ 62

Query: 114 NRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
              + +      + I  P ++K   GG   G+ +I  +  +      + S +      D 
Sbjct: 63  PLQSAEEAVRICNAIGYPVMLKASMGGGGKGMRLIHSEDEVVEAYNTARSESMSSFGDDT 122

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK---IPL 221
           + +E++V+    +   ++GD   +V  +       +  E      N   V  +    +  
Sbjct: 123 VYLEKFVEEPHHIEFQILGDNHGNVIHL-------FDRECSVQRRNQKIVEESPSPFLTP 175

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           ++ +E+   A  A +A+   G    +FL D  +R  ++LE+N 
Sbjct: 176 ELRQEMGEKAVAAARAVNYSGAGTIEFLVDK-NRDFYFLEMNT 217


>gi|42525182|ref|NP_970562.1| pyruvate carboxylase [Bdellovibrio bacteriovorus HD100]
 gi|39577393|emb|CAE81216.1| pyruvate carboxylase [Bdellovibrio bacteriovorus HD100]
          Length = 500

 Score = 85.2 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 78/221 (35%), Gaps = 18/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+      L+   I +    +       DK+ +K ++   GVP  P    
Sbjct: 79  AVHPGYGFLSENTTFAQALKDAGITFIGPTVANIEAMGDKLSAKALMKKAGVPTVPGSDG 138

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS----WNHGDQ 165
            +            I  P +IK   GG   G+ V+++   +        S    +     
Sbjct: 139 GVESVEEAQKIAEQIGLPIIIKASAGGGGKGMRVVRQMDELESAFRACRSEGQNYFADPT 198

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDI 223
           + IE+++ D   +   V GD     T             ++          P   +P ++
Sbjct: 199 VYIEKFINDPKHIEIQVFGD-----THNNHVHLFERECSVQRRHQKIIEECPSPSVPHEV 253

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              +   A  A + I   G    +F+FD  +++ +++E+N 
Sbjct: 254 RLRMGEAAVRAAKQINYVGAGTIEFIFDNATKEFYFMEMNT 294


>gi|99081868|ref|YP_614022.1| pyruvate carboxylase [Ruegeria sp. TM1040]
 gi|99038148|gb|ABF64760.1| pyruvate carboxylase [Ruegeria sp. TM1040]
          Length = 1146

 Score = 85.2 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 77/221 (34%), Gaps = 18/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+           I +            DK  +++V    GVPV P+  V
Sbjct: 80  AIHPGYGLLSENPDFVDACARNGITFIGPKAETMRALGDKASARRVAIEAGVPVIPATEV 139

Query: 114 NRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ----SSSWNHGDQ 165
               MD+       +  P ++K   GG   G+  I  +  +   +L+    + +     +
Sbjct: 140 LGDDMDAIRKEAAEVGYPLMLKASWGGGGRGMRPIHSEDELEEKVLEGRREAEAAFGNGE 199

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
             +E+ +     +   ++GD   ++  +           ++  +       PA  +    
Sbjct: 200 GYLEKMITRARHVEVQILGDKHGEIYHLYE-----RDCSVQRRNQKVVERAPAPYLTDAQ 254

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             E+  L     Q +        +FL D  + K +++E+N 
Sbjct: 255 RAEICDLGRKICQHVNYECAGTVEFLMDMETEKFYFIEVNP 295


>gi|169780672|ref|XP_001824800.1| 3-methylcrotonyl-CoA carboxylase subunit alpha (MccA) [Aspergillus
           oryzae RIB40]
 gi|238505138|ref|XP_002383798.1| 3-methylcrotonyl-CoA carboxylase subunit alpha (MccA), putative
           [Aspergillus flavus NRRL3357]
 gi|83773540|dbj|BAE63667.1| unnamed protein product [Aspergillus oryzae]
 gi|220689912|gb|EED46262.1| 3-methylcrotonyl-CoA carboxylase subunit alpha (MccA), putative
           [Aspergillus flavus NRRL3357]
          Length = 711

 Score = 85.2 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 55/287 (19%), Positives = 97/287 (33%), Gaps = 44/287 (15%)

Query: 13  EVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNV--------------- 57
           E++L  G+  A      G +V+ +  D       A   P  AFN+               
Sbjct: 49  EIALRVGRTAAQH----GIRVTTLYTDPDSRAQHALSSP-FAFNLGSVSAYLDGDRIIEI 103

Query: 58  --------LHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP 106
                   +H  +G   E+           + +      A     DK +SK+++++ GVP
Sbjct: 104 AKREGCQGIHPGYGFLSENSEFARKCTEAGLVFIGPPWKAIEDMGDKSQSKKIMTAAGVP 163

Query: 107 VCPSIL----VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
             P          F       I  P +IK +KGG   G+ +          L  + S   
Sbjct: 164 CVPGYHGQNQDPSFLEAEADKIKYPVLIKAIKGGGGKGMRIAHSKSEFQAQLQSAKSEAM 223

Query: 163 ----GDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
                D +L+E+Y+     +   V  D   +   +            K            
Sbjct: 224 NSFGDDHVLVEKYITTPRHIEVQVFADKHGNSVALGERDCSIQRRHQKIL----EESPAP 279

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +P    K++   A  A +A+G  G    +F+FD  + + F++E+N 
Sbjct: 280 HLPDATRKDLWAKARAAAEAVGYEGAGTVEFIFDNDTGEFFFMEMNT 326


>gi|320450057|ref|YP_004202153.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Thermus
           scotoductus SA-01]
 gi|320150226|gb|ADW21604.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Thermus
           scotoductus SA-01]
          Length = 445

 Score = 85.2 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 34/219 (15%), Positives = 76/219 (34%), Gaps = 18/219 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     +     I +            DK  +++V    GVP  P    
Sbjct: 76  AIHPGYGFLAENATFAEMCRDHGITFIGPTPENMRALGDKATARKVAREAGVPTVPGTDE 135

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGDQL 166
           +        +   I  P ++K   GG   G+ ++  ++ +   +     ++ +      +
Sbjct: 136 LTSVEEAKRAAQEIGYPVILKASAGGGGRGMRLVHTEEELERAVQQAQEEARAAFGNPAI 195

Query: 167 LIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
            +E+Y++    +   V+GD   +V  +            K          P+ +P +  K
Sbjct: 196 YLEKYIEEPKHIEIQVLGDGE-NVIHLWERDCSIQRRHQKLL-----EEAPSTLPWETRK 249

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +   A    + +G       +FL D      +++E+N 
Sbjct: 250 AIAEAAARLARYVGYVSAGTLEFLVDKEGN-FYFIEMNT 287


>gi|300361814|ref|ZP_07057991.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus gasseri
           JV-V03]
 gi|300354433|gb|EFJ70304.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus gasseri
           JV-V03]
          Length = 1062

 Score = 85.2 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 43/297 (14%), Positives = 97/297 (32%), Gaps = 38/297 (12%)

Query: 22  CASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ--- 69
           C  AL+  G++   I         D   S  L    L  +   NV      E  ++Q   
Sbjct: 577 CVKALQKMGYEAIVINSNPETVSTDFSISDKLYFEPLTLEDVLNVCDLEKPEGVIIQFGG 636

Query: 70  -------AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDS 120
                  A LE   +    + +     + D+    Q++    +     +        + +
Sbjct: 637 QTSINLAAGLEKHGVKILGTTVKDLNRAEDRELFDQIIKKLQLNQPKGLTATTHDGVIKA 696

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P +++P        + ++     +   L           +L++ Y+DG E    
Sbjct: 697 AEELGYPVLVRPSYVLGGKAMEIVYNKSELEEYLHDHVDIAADHPILVDDYLDGRECDVD 756

Query: 181 VMGDAS---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQ 236
            + D     L      +  +  +S        +S  V P +    D+ +++  +      
Sbjct: 757 AICDGKDVLLPGIMEHIEHAGVHS-------GDSMAVYPPQTFTDDVKEKIMDVTRKLAL 809

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            + C GI    F+    + +V+ +E+N +   T     P ++   G    ++   ++
Sbjct: 810 TLNCVGIMNIQFIVR--NGEVYVIEVNPRASRT----VPFLSKITGIEMAQVATRVI 860



 Score = 76.3 bits (187), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 49/289 (16%), Positives = 97/289 (33%), Gaps = 39/289 (13%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI---------DVD------------RSVGLV 45
           G ++E + S   G     AL + G++V  +         D               S+  +
Sbjct: 21  GQAAEFDYS---GTQACLALREEGYEVVLVNSNPATIMTDTTIADKVYIEPLTVESISRI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +    PD     L G  G +  +      IL+ L I    + + +   + D+ + K++  
Sbjct: 78  IRQEYPDAILPTLGGQVGLNMALALAKTGILDELNIELLGTKLSSIEQAEDREKFKELCK 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G PV PS  VN     +     I  P +++P       G  +    + +         
Sbjct: 138 KLGEPVPPSRTVNTVEDALAFGDEIGYPIIVRPAFTMGGTGGGICHNHEELAEIAKNGLE 197

Query: 160 WNHGDQLLIEQYVDG---IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216
            +   + LIE+ + G   IE       D +  +            +     + +S    P
Sbjct: 198 LSPVTECLIEKSIAGYKEIEFEVMRDHDDNAMIVCCMENFDPVGIH-----TGDSIVFSP 252

Query: 217 AK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           ++ +    Y+ ++  +    +A+   G        DP S     +E+N 
Sbjct: 253 SQTLSDKEYQMLRDCSLRLIRALKIEGGCNVQLALDPNSFDYDVIEVNP 301


>gi|260205816|ref|ZP_05773307.1| acetyl-/propionyl-CoA carboxylase alpha subunit accA1
           [Mycobacterium tuberculosis K85]
 gi|289575206|ref|ZP_06455433.1| acetyl-/propionyl-CoA carboxylase alpha subunit accA1
           [Mycobacterium tuberculosis K85]
 gi|289539637|gb|EFD44215.1| acetyl-/propionyl-CoA carboxylase alpha subunit accA1
           [Mycobacterium tuberculosis K85]
          Length = 654

 Score = 85.2 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 80/221 (36%), Gaps = 17/221 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+    A  E   + +      A  +  DK+ +K  V++  VPV P +  
Sbjct: 77  AIHPGYGFLAENADFAAACERARVVFLGPPARAIEVMGDKIAAKNAVAAFDVPVVPGVAR 136

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
              T D    +   +  P +IKP  GG   G+ +++    +P  L+ +          D 
Sbjct: 137 AGLTDDALVTAAAEVGYPVLIKPSAGGGGKGMRLVQDPARLPEALVSARREAMSSFGDDT 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           L +E++V     +   V+ DA  +V  +   +        K             +     
Sbjct: 197 LFLERFVLRPRHIEVQVLADAHGNVVHLGERECSLQRRHQK----VIEEAPSPLLDPQTR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLS-RKVFWLEINV 264
           + +   A    + +   G    +F+       + F++E+N 
Sbjct: 253 ERIGVAACNTARCVDYVGAGTVEFIVSAQRPDEFFFMEMNT 293


>gi|215431447|ref|ZP_03429366.1| acetyl-/propionyl-coenzyme A carboxylase subunit alpha
           [Mycobacterium tuberculosis EAS054]
 gi|289754610|ref|ZP_06513988.1| acetyl-/propionyl-coenzyme A carboxylase subunit alpha
           [Mycobacterium tuberculosis EAS054]
 gi|289695197|gb|EFD62626.1| acetyl-/propionyl-coenzyme A carboxylase subunit alpha
           [Mycobacterium tuberculosis EAS054]
          Length = 654

 Score = 85.2 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 80/221 (36%), Gaps = 17/221 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+    A  E   + +      A  +  DK+ +K  V++  VPV P +  
Sbjct: 77  AIHPGYGFLAENADFAAACERARVVFLGPPARAIEVMGDKIAAKNAVAAFDVPVVPGVAR 136

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
              T D    +   +  P +IKP  GG   G+ +++    +P  L+ +          D 
Sbjct: 137 AGLTDDALVTAAAEVGYPVLIKPSAGGGGKGMRLVQDPARLPEALVSARREAMSSFGDDT 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           L +E++V     +   V+ DA  +V  +   +        K             +     
Sbjct: 197 LFLERFVLRPRHIEVQVLADAHGNVVHLGERECSLQRRHQK----VIEEAPSPLLDPQTR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLS-RKVFWLEINV 264
           + +   A    + +   G    +F+       + F++E+N 
Sbjct: 253 ERIGVAACNTARCVDYVGAGTVEFIVSAQRPDEFFFMEMNT 293


>gi|163738698|ref|ZP_02146112.1| pyruvate carboxylase [Phaeobacter gallaeciensis BS107]
 gi|161388026|gb|EDQ12381.1| pyruvate carboxylase [Phaeobacter gallaeciensis BS107]
          Length = 1146

 Score = 85.2 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 76/221 (34%), Gaps = 18/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+           I +            DK  +++V     VPV P+  V
Sbjct: 80  AIHPGYGLLSENPDFVDACARNGITFIGPKAETMRALGDKASARRVAIDADVPVIPATEV 139

Query: 114 NRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ----SSSWNHGDQ 165
               MD+       +  P ++K   GG   G+  I  +  +   +L+    + +     +
Sbjct: 140 LGNDMDAIRKEAAEVGYPLMLKASWGGGGRGMRPIHSEDELEEKVLEGRREAEAAFGNGE 199

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
             +E+ +     +   ++GD   ++  +           ++  +       PA  +  + 
Sbjct: 200 GYLEKMITRARHVEVQILGDKHGEIYHLYE-----RDCSVQRRNQKVVERAPAPYLTEEQ 254

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             E+  L     Q +        +FL D    K +++E+N 
Sbjct: 255 RTEICDLGRKICQHVNYECAGTVEFLMDMNDGKFYFIEVNP 295


>gi|15609638|ref|NP_217017.1| acetyl-/propionyl-coenzyme A carboxylase subunit alpha
           [Mycobacterium tuberculosis H37Rv]
 gi|15842029|ref|NP_337066.1| acetyl/propionyl-CoA carboxylase, alpha subunit [Mycobacterium
           tuberculosis CDC1551]
 gi|31793681|ref|NP_856174.1| acetyl-/propionyl-coenzyme A carboxylase subunit alpha
           [Mycobacterium bovis AF2122/97]
 gi|121638383|ref|YP_978607.1| putative acetyl-/propionyl-coenzyme A carboxylase alpha chain
           subunit alpha accA1 [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|148662337|ref|YP_001283860.1| acetyl-/propionyl-coenzyme A carboxylase subunit alpha
           [Mycobacterium tuberculosis H37Ra]
 gi|148823698|ref|YP_001288452.1| acetyl-/propionyl-coenzyme A carboxylase subunit alpha
           [Mycobacterium tuberculosis F11]
 gi|215404438|ref|ZP_03416619.1| acetyl-/propionyl-coenzyme A carboxylase subunit alpha
           [Mycobacterium tuberculosis 02_1987]
 gi|215412267|ref|ZP_03421027.1| acetyl-/propionyl-coenzyme A carboxylase subunit alpha
           [Mycobacterium tuberculosis 94_M4241A]
 gi|215427884|ref|ZP_03425803.1| acetyl-/propionyl-coenzyme A carboxylase subunit alpha
           [Mycobacterium tuberculosis T92]
 gi|215446751|ref|ZP_03433503.1| acetyl-/propionyl-coenzyme A carboxylase subunit alpha
           [Mycobacterium tuberculosis T85]
 gi|218754234|ref|ZP_03533030.1| acetyl-/propionyl-coenzyme A carboxylase subunit alpha
           [Mycobacterium tuberculosis GM 1503]
 gi|219558501|ref|ZP_03537577.1| acetyl-/propionyl-coenzyme A carboxylase subunit alpha
           [Mycobacterium tuberculosis T17]
 gi|224990877|ref|YP_002645564.1| putative acetyl-/propionyl-coenzyme A carboxylase alpha chain
           subunit alpha [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253798419|ref|YP_003031420.1| acetyl-/propionyl-CoA carboxylase alpha subunit accA1
           [Mycobacterium tuberculosis KZN 1435]
 gi|254232630|ref|ZP_04925957.1| acetyl-/propionyl-coenzyme A carboxylase alpha chain (alpha
           subunit) accA1 : biotin carboxylase + biotin carboxyl
           carrier protein [Mycobacterium tuberculosis C]
 gi|254551548|ref|ZP_05141995.1| acetyl-/propionyl-CoA carboxylase alpha subunit accA1
           [Mycobacterium tuberculosis '98-R604 INH-RIF-EM']
 gi|260187508|ref|ZP_05764982.1| acetyl-/propionyl-CoA carboxylase alpha subunit accA1
           [Mycobacterium tuberculosis CPHL_A]
 gi|260201626|ref|ZP_05769117.1| acetyl-/propionyl-CoA carboxylase alpha subunit accA1
           [Mycobacterium tuberculosis T46]
 gi|289444032|ref|ZP_06433776.1| acetyl-/propionyl-CoA carboxylase alpha subunit accA1
           [Mycobacterium tuberculosis T46]
 gi|289448146|ref|ZP_06437890.1| acetyl-/propionyl-CoA carboxylase alpha subunit accA1
           [Mycobacterium tuberculosis CPHL_A]
 gi|289553707|ref|ZP_06442917.1| acetyl-/propionyl-CoA carboxylase alpha subunit accA1
           [Mycobacterium tuberculosis KZN 605]
 gi|289570661|ref|ZP_06450888.1| acetyl-/propionyl-CoA carboxylase alpha subunit accA1
           [Mycobacterium tuberculosis T17]
 gi|289746283|ref|ZP_06505661.1| biotin carboxyl carrier protein [Mycobacterium tuberculosis
           02_1987]
 gi|289751110|ref|ZP_06510488.1| acetyl-/propionyl-CoA carboxylase alpha subunit accA1
           [Mycobacterium tuberculosis T92]
 gi|289758633|ref|ZP_06518011.1| acetyl/propionyl-CoA carboxylase [Mycobacterium tuberculosis T85]
 gi|289762669|ref|ZP_06522047.1| biotin carboxylase [Mycobacterium tuberculosis GM 1503]
 gi|294994391|ref|ZP_06800082.1| acetyl-/propionyl-CoA carboxylase alpha subunit accA1
           [Mycobacterium tuberculosis 210]
 gi|297635109|ref|ZP_06952889.1| acetyl-/propionyl-CoA carboxylase alpha subunit accA1
           [Mycobacterium tuberculosis KZN 4207]
 gi|297732100|ref|ZP_06961218.1| acetyl-/propionyl-CoA carboxylase alpha subunit accA1
           [Mycobacterium tuberculosis KZN R506]
 gi|298525973|ref|ZP_07013382.1| biotin carboxyl carrier protein [Mycobacterium tuberculosis
           94_M4241A]
 gi|306776774|ref|ZP_07415111.1| acetyl-/propionyl-CoA carboxylase alpha subunit accA1
           [Mycobacterium tuberculosis SUMu001]
 gi|306780540|ref|ZP_07418877.1| acetyl-/propionyl-CoA carboxylase alpha subunit accA1
           [Mycobacterium tuberculosis SUMu002]
 gi|306785302|ref|ZP_07423624.1| acetyl-/propionyl-CoA carboxylase alpha subunit accA1
           [Mycobacterium tuberculosis SUMu003]
 gi|306789655|ref|ZP_07427977.1| acetyl-/propionyl-CoA carboxylase alpha subunit accA1
           [Mycobacterium tuberculosis SUMu004]
 gi|306793982|ref|ZP_07432284.1| acetyl-/propionyl-CoA carboxylase alpha subunit accA1
           [Mycobacterium tuberculosis SUMu005]
 gi|306798377|ref|ZP_07436679.1| acetyl-/propionyl-CoA carboxylase alpha subunit accA1
           [Mycobacterium tuberculosis SUMu006]
 gi|306804257|ref|ZP_07440925.1| acetyl-/propionyl-CoA carboxylase alpha subunit accA1
           [Mycobacterium tuberculosis SUMu008]
 gi|306807702|ref|ZP_07444370.1| acetyl-/propionyl-CoA carboxylase alpha subunit accA1
           [Mycobacterium tuberculosis SUMu007]
 gi|306968654|ref|ZP_07481315.1| acetyl-/propionyl-CoA carboxylase alpha subunit accA1
           [Mycobacterium tuberculosis SUMu009]
 gi|306972885|ref|ZP_07485546.1| acetyl-/propionyl-CoA carboxylase alpha subunit accA1
           [Mycobacterium tuberculosis SUMu010]
 gi|307080599|ref|ZP_07489769.1| acetyl-/propionyl-CoA carboxylase alpha subunit accA1
           [Mycobacterium tuberculosis SUMu011]
 gi|307085185|ref|ZP_07494298.1| acetyl-/propionyl-CoA carboxylase alpha subunit accA1
           [Mycobacterium tuberculosis SUMu012]
 gi|313659434|ref|ZP_07816314.1| acetyl-/propionyl-CoA carboxylase alpha subunit accA1
           [Mycobacterium tuberculosis KZN V2475]
 gi|61219642|sp|P0A508|BCCA_MYCTU RecName: Full=Acetyl-/propionyl-coenzyme A carboxylase alpha chain;
           Includes: RecName: Full=Biotin carboxylase; Includes:
           RecName: Full=Biotin carboxyl carrier protein;
           Short=BCCP
 gi|61219643|sp|P0A509|BCCA_MYCBO RecName: Full=Acetyl-/propionyl-coenzyme A carboxylase alpha chain;
           Includes: RecName: Full=Biotin carboxylase; Includes:
           RecName: Full=Biotin carboxyl carrier protein;
           Short=BCCP
 gi|44570|emb|CAA79609.1| biotin carboxyl carrier protein [Mycobacterium tuberculosis]
 gi|2113934|emb|CAB08919.1| PROBABLE ACETYL-/PROPIONYL-COENZYME A CARBOXYLASE ALPHA CHAIN
           (ALPHA SUBUNIT) ACCA1: BIOTIN CARBOXYLASE + BIOTIN
           CARBOXYL CARRIER PROTEIN (BCCP) [Mycobacterium
           tuberculosis H37Rv]
 gi|13882307|gb|AAK46880.1| acetyl/propionyl-CoA carboxylase, alpha subunit [Mycobacterium
           tuberculosis CDC1551]
 gi|31619274|emb|CAD97390.1| PROBABLE ACETYL-/PROPIONYL-COENZYME A CARBOXYLASE ALPHA CHAIN
           (ALPHA SUBUNIT) ACCA1: BIOTIN CARBOXYLASE + BIOTIN
           CARBOXYL CARRIER PROTEIN (BCCP) [Mycobacterium bovis
           AF2122/97]
 gi|121494031|emb|CAL72509.1| Probable acetyl-/propionyl-coenzyme A carboxylase alpha chain
           (alpha subunit) accA1 [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|124601689|gb|EAY60699.1| acetyl-/propionyl-coenzyme A carboxylase alpha chain (alpha
           subunit) accA1 : biotin carboxylase + biotin carboxyl
           carrier protein [Mycobacterium tuberculosis C]
 gi|148506489|gb|ABQ74298.1| acetyl-/propionyl-coenzyme A carboxylase alpha chain AccA1 : biotin
           carboxylase + biotin carboxyl carrier protein
           [Mycobacterium tuberculosis H37Ra]
 gi|148722225|gb|ABR06850.1| acetyl-/propionyl-coenzyme A carboxylase alpha subunit accA1 :
           biotin carboxylase + biotin carboxyl carrier protein
           [Mycobacterium tuberculosis F11]
 gi|224773990|dbj|BAH26796.1| putative acetyl-/propionyl-coenzyme A carboxylase alpha chain
           subunit alpha [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253319922|gb|ACT24525.1| acetyl-/propionyl-CoA carboxylase alpha subunit accA1
           [Mycobacterium tuberculosis KZN 1435]
 gi|289416951|gb|EFD14191.1| acetyl-/propionyl-CoA carboxylase alpha subunit accA1
           [Mycobacterium tuberculosis T46]
 gi|289421104|gb|EFD18305.1| acetyl-/propionyl-CoA carboxylase alpha subunit accA1
           [Mycobacterium tuberculosis CPHL_A]
 gi|289438339|gb|EFD20832.1| acetyl-/propionyl-CoA carboxylase alpha subunit accA1
           [Mycobacterium tuberculosis KZN 605]
 gi|289544415|gb|EFD48063.1| acetyl-/propionyl-CoA carboxylase alpha subunit accA1
           [Mycobacterium tuberculosis T17]
 gi|289686811|gb|EFD54299.1| biotin carboxyl carrier protein [Mycobacterium tuberculosis
           02_1987]
 gi|289691697|gb|EFD59126.1| acetyl-/propionyl-CoA carboxylase alpha subunit accA1
           [Mycobacterium tuberculosis T92]
 gi|289710175|gb|EFD74191.1| biotin carboxylase [Mycobacterium tuberculosis GM 1503]
 gi|289714197|gb|EFD78209.1| acetyl/propionyl-CoA carboxylase [Mycobacterium tuberculosis T85]
 gi|298495767|gb|EFI31061.1| biotin carboxyl carrier protein [Mycobacterium tuberculosis
           94_M4241A]
 gi|308214835|gb|EFO74234.1| acetyl-/propionyl-CoA carboxylase alpha subunit accA1
           [Mycobacterium tuberculosis SUMu001]
 gi|308326606|gb|EFP15457.1| acetyl-/propionyl-CoA carboxylase alpha subunit accA1
           [Mycobacterium tuberculosis SUMu002]
 gi|308330029|gb|EFP18880.1| acetyl-/propionyl-CoA carboxylase alpha subunit accA1
           [Mycobacterium tuberculosis SUMu003]
 gi|308333872|gb|EFP22723.1| acetyl-/propionyl-CoA carboxylase alpha subunit accA1
           [Mycobacterium tuberculosis SUMu004]
 gi|308337672|gb|EFP26523.1| acetyl-/propionyl-CoA carboxylase alpha subunit accA1
           [Mycobacterium tuberculosis SUMu005]
 gi|308341353|gb|EFP30204.1| acetyl-/propionyl-CoA carboxylase alpha subunit accA1
           [Mycobacterium tuberculosis SUMu006]
 gi|308345890|gb|EFP34741.1| acetyl-/propionyl-CoA carboxylase alpha subunit accA1
           [Mycobacterium tuberculosis SUMu007]
 gi|308349145|gb|EFP37996.1| acetyl-/propionyl-CoA carboxylase alpha subunit accA1
           [Mycobacterium tuberculosis SUMu008]
 gi|308353769|gb|EFP42620.1| acetyl-/propionyl-CoA carboxylase alpha subunit accA1
           [Mycobacterium tuberculosis SUMu009]
 gi|308357712|gb|EFP46563.1| acetyl-/propionyl-CoA carboxylase alpha subunit accA1
           [Mycobacterium tuberculosis SUMu010]
 gi|308361653|gb|EFP50504.1| acetyl-/propionyl-CoA carboxylase alpha subunit accA1
           [Mycobacterium tuberculosis SUMu011]
 gi|308365265|gb|EFP54116.1| acetyl-/propionyl-CoA carboxylase alpha subunit accA1
           [Mycobacterium tuberculosis SUMu012]
 gi|323718909|gb|EGB28063.1| acetyl-/propionyl-CoA carboxylase alpha subunit accA1
           [Mycobacterium tuberculosis CDC1551A]
 gi|326904115|gb|EGE51048.1| acetyl-/propionyl-CoA carboxylase alpha subunit accA1
           [Mycobacterium tuberculosis W-148]
 gi|328458187|gb|AEB03610.1| acetyl-/propionyl-CoA carboxylase alpha subunit accA1
           [Mycobacterium tuberculosis KZN 4207]
          Length = 654

 Score = 85.2 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 80/221 (36%), Gaps = 17/221 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+    A  E   + +      A  +  DK+ +K  V++  VPV P +  
Sbjct: 77  AIHPGYGFLAENADFAAACERARVVFLGPPARAIEVMGDKIAAKNAVAAFDVPVVPGVAR 136

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
              T D    +   +  P +IKP  GG   G+ +++    +P  L+ +          D 
Sbjct: 137 AGLTDDALVTAAAEVGYPVLIKPSAGGGGKGMRLVQDPARLPEALVSARREAMSSFGDDT 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           L +E++V     +   V+ DA  +V  +   +        K             +     
Sbjct: 197 LFLERFVLRPRHIEVQVLADAHGNVVHLGERECSLQRRHQK----VIEEAPSPLLDPQTR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLS-RKVFWLEINV 264
           + +   A    + +   G    +F+       + F++E+N 
Sbjct: 253 ERIGVAACNTARCVDYVGAGTVEFIVSAQRPDEFFFMEMNT 293


>gi|331699872|ref|YP_004336111.1| methylcrotonoyl-CoA carboxylase [Pseudonocardia dioxanivorans
           CB1190]
 gi|326954561|gb|AEA28258.1| Methylcrotonoyl-CoA carboxylase [Pseudonocardia dioxanivorans
           CB1190]
          Length = 666

 Score = 85.2 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 84/221 (38%), Gaps = 17/221 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+    A  E   I +      A     DK+R+KQ V+  GVPV P    
Sbjct: 77  AIHPGYGFLSENTAFAAACEAAGIVFVGPPASAIEAMGDKIRAKQTVAKAGVPVVPGSDG 136

Query: 112 --LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
             L +     +   I  P ++KP  GG   G++ + + + +   ++ +          D 
Sbjct: 137 AGLSDDDLAAAVDEIGYPVLLKPSAGGGGKGMVEVHRAEDLADAIVGARRVAKGAFGDDT 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           LL+E+ V     +   V+ DA   V  +   +        K           A +  +  
Sbjct: 197 LLVERLVTTPRHIEIQVLADAHGTVVHLGERECSLQRRHQKI----VEEAPSALLTPEQR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLF-DPLSRKVFWLEINV 264
           + +   A  A +++G  G    +F+       + F++E+N 
Sbjct: 253 ERMGAAAVEAARSVGYTGAGTVEFIVGGDRPDEFFFMEMNT 293


>gi|319442478|ref|ZP_07991634.1| pyruvate carboxylase [Corynebacterium variabile DSM 44702]
          Length = 1148

 Score = 85.2 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 37/240 (15%), Positives = 81/240 (33%), Gaps = 19/240 (7%)

Query: 35  QIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKM 94
            +D+D  +         D  +   +G   E+  +        I +         L+ DK 
Sbjct: 68  YLDIDE-IIRAAKQTGADAVYPG-YGFLSENAELARKCAANGITFIGPSPETLDLTGDKS 125

Query: 95  RSKQVVSSCGVPV----CPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150
            + +     G+P+     PS  ++   +      + P  +K + GG   G+  +     +
Sbjct: 126 AAVEAARKAGLPILDDSAPSEDIDEL-VSFAEGRTYPLFVKAVAGGGGRGMRFVASPDEL 184

Query: 151 PLDLLQSSSWNH----GDQLLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205
                ++S          ++ IE+  ++   +   ++GD   ++              L+
Sbjct: 185 AEKAAEASREAAAAFGDGRVYIERAVINPQHIEVQILGDTQGNII-----HLFERDCSLQ 239

Query: 206 YSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
                   + PA+ I  ++   +   A    ++I   G    +FL D     VF  E+N 
Sbjct: 240 RRHQKVVEIAPAQHISAELRDRICADAVKFCESINYYGAGTVEFLVDENENHVFI-EMNP 298


>gi|302773047|ref|XP_002969941.1| hypothetical protein SELMODRAFT_440891 [Selaginella moellendorffii]
 gi|300162452|gb|EFJ29065.1| hypothetical protein SELMODRAFT_440891 [Selaginella moellendorffii]
          Length = 1194

 Score = 85.2 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 55/280 (19%), Positives = 101/280 (36%), Gaps = 38/280 (13%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G++V  I         D D              V  V+A  +PD    
Sbjct: 123 SGTQACKALKEEGYEVVLINSNPATIMTDPDLADRTYIAPMTPELVEQVIAKERPDAVLP 182

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G    +  V       L+   +    + + A   + D+   +Q +   GV   PS  
Sbjct: 183 TMGGQTALNLAVALAESGALDKYGVELIGAKLDAIKKAEDRDLFRQAMQKIGVKTPPSGI 242

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
              +      ++ +   P +I+P       G  +    + +        + +   Q+L+E
Sbjct: 243 ATTLEECFQIAETIGEFPLIIRPAFTLGGTGGGIAYNREELETICKSGLTASITSQVLVE 302

Query: 170 QYVDG-IELTCGVMGDASLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPAK-IPLDIYKE 226
           + + G  E    VM D + +V  I   ++ D           +S  V PA+ +    Y+ 
Sbjct: 303 KSLLGWKEYELEVMRDLADNVVIICSIENIDPMGVHT----GDSITVAPAQTLTDKEYQR 358

Query: 227 VQRLAFLAHQAIG--CRGISRSDFLFDPLSRKVFWLEINV 264
           ++  A    + IG  C G S   F  +P   +V  +E+N 
Sbjct: 359 LRDQAIAIIREIGVECGG-SNVQFAINPEDGEVMIIEMNP 397



 Score = 52.8 bits (126), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 27/188 (14%), Positives = 70/188 (37%), Gaps = 8/188 (4%)

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSS 138
            +   +   S D+ R + +++  G+   P  +       +     +  P V++P      
Sbjct: 769 GTSPDSIDASEDRKRFESILNQLGIKQPPGGIARSEEDALAIAKRVGFPVVVRPSYVLGG 828

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKS 197
             + ++  +  +   L  +   + G  +L+++Y+ D  E+    + D +  V    + + 
Sbjct: 829 RAMEIVYSNDKLKKYLETAVEVDPGRPVLVDKYLTDSSEIDVDCLADGNGGVVIGGIME- 887

Query: 198 DFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256
             +  +    S +S   +P + IP      ++       + +   G+    F     S +
Sbjct: 888 --HIEQAGVHSGDSACSIPTQTIPAVALATIRDATTKLAKKLNVCGLMNCQFAIT-QSGE 944

Query: 257 VFWLEINV 264
           V+ +E N 
Sbjct: 945 VYIIEANP 952


>gi|254384719|ref|ZP_05000057.1| acetyl/propionyl CoA carboxylase alpha subunit [Streptomyces sp.
           Mg1]
 gi|194343602|gb|EDX24568.1| acetyl/propionyl CoA carboxylase alpha subunit [Streptomyces sp.
           Mg1]
          Length = 676

 Score = 85.2 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 45/222 (20%), Positives = 89/222 (40%), Gaps = 19/222 (8%)

Query: 57  VLHGNFG---ED-GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--- 109
            +H  +G   E+ G  QA  E   + +      A +L  DK+R+K+ V + GVPV P   
Sbjct: 77  AIHPGYGFLAENAGFAQACAE-AGLAFIGPPAKAISLMGDKIRAKETVKAAGVPVVPGSS 135

Query: 110 -SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GD 164
            S L +   + +   I  P ++KP  GG   G+ +++    +  ++  +          D
Sbjct: 136 GSGLSDAELVAAAEEIGMPVLLKPSAGGGGKGMRLVRDAGLLAEEIAAARREARSSFGDD 195

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            LL+E++VD    +   V+ D+  +V  +   +        K             +  ++
Sbjct: 196 TLLVERWVDRPRHIEIQVLADSYGNVVHLGERECSLQRRHQK----VIEEAPSVLLTPEL 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLS-RKVFWLEINV 264
              +   A  A ++ G  G    +F+         +++E+N 
Sbjct: 252 RASMGAAAVEAARSCGYVGAGTVEFIVPGGDPSSYYFMEMNT 293


>gi|83954005|ref|ZP_00962726.1| pyruvate carboxylase [Sulfitobacter sp. NAS-14.1]
 gi|83841950|gb|EAP81119.1| pyruvate carboxylase [Sulfitobacter sp. NAS-14.1]
          Length = 1146

 Score = 85.2 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 33/221 (14%), Positives = 78/221 (35%), Gaps = 18/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+           I +            DK  +++V    GVPV P+  V
Sbjct: 80  AIHPGYGLLSENPDFVDACAQNGITFIGPRAETMRTLGDKASARRVAMEAGVPVVPATDV 139

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-----SSSWNHGD 164
               ++        +  P ++K   GG   G+  I  ++ +   +++      +++ +G+
Sbjct: 140 LGDDIEVVRKQAAEVGYPLMLKASWGGGGRGMRPIANEEELKEKVMEGRREAEAAFGNGE 199

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
             L +  +    +   ++GD+  ++              ++  +       PA  +  + 
Sbjct: 200 GYLEKMILKARHVEVQILGDSHGEIY-----HLFERDCSVQRRNQKVVERAPAPYLTEEQ 254

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             E+  L       +        +FL D    K +++E+N 
Sbjct: 255 RAEICELGRKICAHVNYECAGTVEFLMDMDDSKFYFIEVNP 295


>gi|83952263|ref|ZP_00960995.1| pyruvate carboxylase [Roseovarius nubinhibens ISM]
 gi|83837269|gb|EAP76566.1| pyruvate carboxylase [Roseovarius nubinhibens ISM]
          Length = 1145

 Score = 85.2 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 79/221 (35%), Gaps = 18/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       E   I +            DK  +++V    GVPV P+  V
Sbjct: 80  AIHPGYGLLSENPDFVDACEANGITFIGPKAETMRALGDKASARRVAIEAGVPVIPATEV 139

Query: 114 NRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-----SSSWNHGD 164
               M++       +  P ++K   GG   G+  I     +   +L+      +++ +G+
Sbjct: 140 LGDDMEAIAREAEEVGYPLMLKASWGGGGRGMRPINGPDELVEKVLEGRREAEAAFGNGE 199

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
             L +  +    +   ++GD   ++              ++  +       PA  +    
Sbjct: 200 GYLEKMILRARHVEVQILGDKHGNMY-----HLFERDCSVQRRNQKVVERAPAPYLSEAQ 254

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             E+  L +   + +        +FL D  S + +++E+N 
Sbjct: 255 RAEICELGYKICKHVNYECAGTVEFLMDMDSGEFYFIEVNP 295


>gi|225683415|gb|EEH21699.1| methylcrotonoyl-CoA carboxylase subunit alpha [Paracoccidioides
           brasiliensis Pb03]
          Length = 754

 Score = 85.2 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 43/210 (20%), Positives = 77/210 (36%), Gaps = 13/210 (6%)

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD---- 119
           E+           + +      A     DK RSK+++++ GVP  P        MD    
Sbjct: 155 ENSTFAQKCTQAGLVFIGPPPKAIEAMGDKSRSKEIMTTAGVPCVPGYHGENQDMDFLEA 214

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG----DQLLIEQYVD-G 174
               I  P +IK +KGG   G+ +    ++    L+ + S        D +L+E+Y+   
Sbjct: 215 EAERIKFPVLIKAVKGGGGKGMRIASSKETFRDQLISAKSEAMNSFGNDTMLVEKYITTP 274

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
             +   V  D   +   +            K             +P    K++   A  A
Sbjct: 275 RHIEVQVFADKHGNCVALGERDCSIQRRHQKIL----EESPAPHLPEATRKDIWDRARAA 330

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             A+G  G    +F+FD  + + F++E+N 
Sbjct: 331 ALAVGYEGAGTVEFIFDNDTGEFFFMEMNT 360


>gi|187934420|ref|YP_001887426.1| carbamoyl-phosphate synthase large chain [Clostridium botulinum B
           str. Eklund 17B]
 gi|187722573|gb|ACD23794.1| phosphoribosylglycinamide synthetase family protein [Clostridium
           botulinum B str. Eklund 17B]
          Length = 383

 Score = 85.2 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 35/188 (18%), Positives = 78/188 (41%), Gaps = 17/188 (9%)

Query: 82  SGILASAL-SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLG 140
                  L S +K   ++V     +P    I + + T   + +I  P ++KP     S G
Sbjct: 92  CNSNECTLISTNKFEMRKVFYKNNIPSPKFIYITKDTNLEELIIDYPVIVKPTDRSGSRG 151

Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFY 200
           I  +   Q +   + ++   +   + LIE++ +G E +   + +           K +F 
Sbjct: 152 INKVYNLQEMKYAVKEAIEVSFNKEALIEEFAEGREFSVEYISENG---------KHNFL 202

Query: 201 SYELKYSSL-----NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR-GISRSDFLFDPLS 254
           +   K+++       + H+ PA+I  +  ++++ +   A  A+  + G S S+   D  +
Sbjct: 203 AITEKFTTGEPHFIETAHMQPARITREQEEKIKEIIPQALTALKIKNGASHSELKIDE-N 261

Query: 255 RKVFWLEI 262
             +  +EI
Sbjct: 262 NNIKIIEI 269


>gi|163741590|ref|ZP_02148981.1| pyruvate carboxylase [Phaeobacter gallaeciensis 2.10]
 gi|161385324|gb|EDQ09702.1| pyruvate carboxylase [Phaeobacter gallaeciensis 2.10]
          Length = 1146

 Score = 85.2 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 76/221 (34%), Gaps = 18/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+           I +            DK  +++V     VPV P+  V
Sbjct: 80  AIHPGYGLLSENPDFVDACARNGITFIGPKAETMRALGDKASARRVAIDADVPVIPATEV 139

Query: 114 NRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ----SSSWNHGDQ 165
               MD+       +  P ++K   GG   G+  I  +  +   +L+    + +     +
Sbjct: 140 LGNDMDAIRKEAAEVGYPLMLKASWGGGGRGMRPIHSEDELEEKVLEGRREAEAAFGNGE 199

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
             +E+ +     +   ++GD   ++  +           ++  +       PA  +  + 
Sbjct: 200 GYLEKMITRARHVEVQILGDKHGEIYHLYE-----RDCSVQRRNQKVVERAPAPYLTEEQ 254

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             E+  L     Q +        +FL D    K +++E+N 
Sbjct: 255 RTEICDLGRKICQHVNYECAGTVEFLMDMNDGKFYFIEVNP 295


>gi|121602954|ref|YP_980283.1| biotin carboxylation domain-containing protein [Polaromonas
           naphthalenivorans CJ2]
 gi|120591923|gb|ABM35362.1| biotin carboxylation domain protein [Polaromonas naphthalenivorans
           CJ2]
          Length = 1203

 Score = 85.2 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 74/220 (33%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       E   I +             K  ++ +  + GVP+ P   +
Sbjct: 77  AIHPGYGFLSENPDFAQACEDAGIAFIGPTPAQMRAFGLKHTARALAEAQGVPLLPGSGL 136

Query: 114 NRF---TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQL 166
                        I  P ++K   GG  +G+ +I+ D  +          + +      L
Sbjct: 137 LSDLAQARSEAARIGYPVMLKSTAGGGGIGMRLIRNDAEMAPAFEAVQRLAQANFKDAGL 196

Query: 167 LIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIY 224
            +E++V+    +   + GD    V  +            +  +       PA  +     
Sbjct: 197 FLEKFVERARHIEVQLFGDGRGQVVSLGE-----RDCSAQRRNQKVIEETPAPGLDEATR 251

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +Q+ A    +A+  R     +++ D  +   ++LE+N 
Sbjct: 252 AALQQTAVRLAEAVHYRSAGTVEYVLDADTGAFYFLEVNT 291


>gi|55742190|ref|NP_001006691.1| methylcrotonoyl-CoA carboxylase 1 (alpha) [Xenopus (Silurana)
           tropicalis]
 gi|49523253|gb|AAH75388.1| methylcrotonoyl-Coenzyme A carboxylase 1 (alpha) [Xenopus
           (Silurana) tropicalis]
          Length = 716

 Score = 85.2 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 84/221 (38%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H  +G   E+     + +   I +      A      K  SK ++S+ GVPV      
Sbjct: 118 AIHPGYGFLSENTEFAELCKKERIIFIGPPSSAIRDMGIKSTSKAIMSAAGVPVIEGYHG 177

Query: 113 ---VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD----QSIPLDLLQSSSWNHGDQ 165
               ++   +    I  P +IK ++GG   G+ + + +    + +     ++    + D 
Sbjct: 178 EDQSDQHLKEQAGKIGYPVMIKAVRGGGGKGMRIAQCEDDFLEQLESARREAKKSFNDDV 237

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDI 223
           +LIE++V +   +   V GD   +   +           ++          P   I  ++
Sbjct: 238 MLIEKFVQNPRHVEVQVFGDQHGNAVYL-----FERDCSVQRRHQKIIEEAPGPGISTEV 292

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +++   A  A +A+   G    +F+ D      +++E+N 
Sbjct: 293 RRKLGEAAVRAAKAVNYVGAGTVEFIMDSKHN-FYFMEMNT 332


>gi|83308712|emb|CAJ01622.1| pyruvate carboxylase, mitochondrial precursor (ec 6.4.1.1)
           [Methylocapsa acidiphila]
          Length = 1147

 Score = 85.2 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 41/238 (17%), Positives = 76/238 (31%), Gaps = 22/238 (9%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRS 96
             V  +    K D     +H  +G   E            I +            +K+ +
Sbjct: 67  DDVIHIAREAKVD----AIHPGYGFLSESPEFAEACAAAGIVFIGPSPQTMRALGNKVAA 122

Query: 97  KQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152
           + +  SCGVPV P+         S       I  P ++K   GG   G+  I+ +  +  
Sbjct: 123 RNLAVSCGVPVMPATPPLPDDPASVKRLAREIGYPVMLKASWGGGGRGMRPIESEDKLLE 182

Query: 153 DL-----LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYS 207
            +        S++   +  L +       +   ++GDA  ++  +            K  
Sbjct: 183 AVTSAKREAKSAFGKDEVYLEKLVRRARHVEVQILGDAHGELVHLFERDCSIQRRNQK-- 240

Query: 208 SLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
                   PA  +       +   A    +A G  G    +FL D  S   +++E+N 
Sbjct: 241 ---VVERAPAPYLDEATRGALCEAALKIGRATGYVGAGTVEFLLDAESGGFYFIEVNP 295


>gi|114566110|ref|YP_753264.1| biotin carboxylase [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
 gi|114337045|gb|ABI67893.1| biotin carboxylase / acetyl-coenzyme A carboxylase carboxyl
           transferase subunit alpha [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
          Length = 449

 Score = 85.2 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 90/220 (40%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+    ++     I +         L  DK++++++V S GVPV P    
Sbjct: 77  AIHPGYGFLAENSHFASLCSSYNIKFIGPPPEVIELMGDKVQARELVKSVGVPVVPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
            +   +  +     I  P +IK   GG   G+ +   + S+   L     ++ +    D+
Sbjct: 137 AVQSYKEALAVAREIGYPVMIKASAGGGGKGMRLAHNESSLKNALEMARMEAGAAFGNDE 196

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+Y++    +   ++GD   ++  +            K           + +   + 
Sbjct: 197 IYLEKYIEEPRHIEFQILGDQLGNLIHLGERDCSLQRRNQKLL----EEAPSSLLDEALR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +++ ++A  A +A G       +FL D  ++K +++E+N 
Sbjct: 253 QQMGKVAVDAARAAGYSSAGTVEFLVDK-NKKFYFIEMNT 291


>gi|118444296|ref|YP_877026.1| biotin carboxylase [Clostridium novyi NT]
 gi|118134752|gb|ABK61796.1| acetyl-CoA carboxylase, biotin carboxylase [Clostridium novyi NT]
          Length = 447

 Score = 84.8 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 33/221 (14%), Positives = 84/221 (38%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  FG   E+     + +   I +            +K ++++++    VP+ P    
Sbjct: 77  AIHPGFGFLSENSKFAQMCKECNIVFIGPDTKTMNNMGNKSKAREIMMKANVPIVPGTEG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGDQ 165
            +  ++  +     I  P ++K   GG   GI ++K    +         ++ +      
Sbjct: 137 NVETSKEALKEAERIGYPVMVKAAAGGGGRGIRIVKNSHELIKMFETAKREAEASFGDGS 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDI 223
           + +E++++    +   ++GD   +V  +            K          P  I   ++
Sbjct: 197 MYMEKFIENPKHVEFQILGDNCGNVVHLGERDCSIQRRNQK-----VLEETPCPIMTEEL 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             ++  +A  A +A+  +G    +FL D  + + +++E+N 
Sbjct: 252 RNKMGEVAIKAAKAVNYKGAGTIEFLLDK-NGEFYFMEMNT 291


>gi|294341844|emb|CAZ90273.1| Urea carboxylase [Thiomonas sp. 3As]
          Length = 1209

 Score = 84.8 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 43/257 (16%), Positives = 84/257 (32%), Gaps = 32/257 (12%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+    A  E   I +             K  ++++    GVP+ P   +
Sbjct: 77  AIHPGYGFLSENPDFAASCEAAGIAFIGPTPAQMRAFGLKHTARELARQSGVPLLPGTGL 136

Query: 114 NR---FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQL 166
                  +     I  P ++K   GG  +G+ +I  +  +          + +      +
Sbjct: 137 LLDAGHALAEARRIGFPVMLKSTAGGGGIGMQLIWSEDQLDAAYARVDRLARANFKEAGI 196

Query: 167 LIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIY 224
            +E+YV     +   V GD +  V              ++  +       PA  +   + 
Sbjct: 197 YLEKYVQAARHIEVQVFGDGAGGVV-----HLGERDCSVQRRNQKVIEETPAPHLADAVR 251

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
             +   A    Q +  R     +F+ D  S   ++LE+N             +    G S
Sbjct: 252 TALCDTAVRLAQGVQYRNAGTVEFVLDAESGAFYFLEVNT-----------RLQVEHGVS 300

Query: 285 FR----ELLLWMVEDAS 297
                 +L+ WMV  A+
Sbjct: 301 EEVSGVDLVEWMVRLAA 317


>gi|290990329|ref|XP_002677789.1| methylcrotonyl-CoA carboxylase [Naegleria gruberi]
 gi|284091398|gb|EFC45045.1| methylcrotonyl-CoA carboxylase [Naegleria gruberi]
          Length = 701

 Score = 84.8 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 80/221 (36%), Gaps = 18/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+    ++     + +      A      K  SK+++    VPV P    
Sbjct: 109 AIHPGYGFLSENAKFASLCAKNGVVFIGPPEGAIISMGSKSESKKIMEHAKVPVVPGYHG 168

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGDQ 165
           +    D        I  P +IK + GG   G+ +   ++     L     ++ +    D+
Sbjct: 169 DEQGEDKLLEEAKKIGFPILIKAVLGGGGKGMKLAHSEKEFKEALSSAKREAKASFGDDR 228

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           +LIE+Y+     +   V  D   +   +           ++          PA  +  ++
Sbjct: 229 VLIEKYIQTPRHIEIQVFADTHGNCVYL-----FERDCSVQRRHQKIIEEAPAPGLADEV 283

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +   A  A +A+G  G    +F+ D      +++E+N 
Sbjct: 284 RRAMGESAVDAARAVGYVGAGTVEFIMDNADNSYYFMEMNT 324


>gi|257455267|ref|ZP_05620502.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Enhydrobacter
           aerosaccus SK60]
 gi|257447229|gb|EEV22237.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Enhydrobacter
           aerosaccus SK60]
          Length = 455

 Score = 84.8 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 41/221 (18%), Positives = 83/221 (37%), Gaps = 21/221 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---- 109
            +H  +G   E+      +E   + +         L  +K+ +   +   GVP  P    
Sbjct: 77  AIHPGYGFLSENAEFAERVEEAGLTFVGPAPEHIRLMGNKISAINAMKKAGVPTVPGSVG 136

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGDQ 165
           S+ +     +    I  P +IK   GG   G+ V+++ + +         ++  W   D 
Sbjct: 137 SVTLANAE-EQARAIGFPLLIKAAAGGGGRGMRVVERLEQLLSQVQAAKQEAELWFGDDS 195

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDI 223
           + +E+++     +   V+GD   +               L+          PA +IP DI
Sbjct: 196 VYMERFLKNPRHVEVQVLGDGEGNAI-----HLFDRDCSLQRRHQKVLEEAPAPEIPEDI 250

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + + +    A + I  RG    +FL+     + F++E+N 
Sbjct: 251 KEPILQACVRACEQINYRGAGTFEFLY--EDEQFFFIEMNT 289


>gi|91791073|ref|YP_552023.1| carbamoyl-phosphate synthase L chain, ATP-binding [Polaromonas sp.
           JS666]
 gi|91700954|gb|ABE47125.1| Carbamoyl-phosphate synthase L chain, ATP-binding [Polaromonas sp.
           JS666]
          Length = 677

 Score = 84.8 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 42/203 (20%), Positives = 75/203 (36%), Gaps = 15/203 (7%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT----MDSQHLISPP 127
            E   + +      A      K+ SK++    GVPV P    +         +   I  P
Sbjct: 95  CEAAGLIFVGPSREAIRRMGSKIESKRIALDAGVPVVPGYHADDQDPGVLQAAASDIGYP 154

Query: 128 YVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQLLIEQYVDG-IELTCGVM 182
            +IK   GG   G+ V++        L     ++ +    D++L+E+Y+D    L   ++
Sbjct: 155 VLIKASAGGGGKGMRVVRSAAEFAAALDTVRREAQASFGDDRVLLERYLDEPRHLEVQLL 214

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCR 241
           GD    +  +   +        K          PA  +P  + + +   A    +AIG  
Sbjct: 215 GDKHGQLVHLFERECSIQRNHQK-----VIEEAPAPHLPPAVREALFAHALTMGRAIGYD 269

Query: 242 GISRSDFLFDPLSRKVFWLEINV 264
                +F+ D  S   F+LE+N 
Sbjct: 270 STGTIEFIHDSRSGDTFFLEMNT 292


>gi|94495479|ref|ZP_01302059.1| acetyl-CoA carboxylase, biotin carboxylase [Sphingomonas sp. SKA58]
 gi|94424867|gb|EAT09888.1| acetyl-CoA carboxylase, biotin carboxylase [Sphingomonas sp. SKA58]
          Length = 450

 Score = 84.8 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 74/220 (33%), Gaps = 18/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     I+E   + +            DK+ +K+   + G+P+ P    
Sbjct: 78  AIHPGYGFLSENAKFAEIVEAHGLAFVGPKPEHIRTMGDKIEAKRTAGALGLPLVPGSDG 137

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSWNHGDQ 165
            +               P +IK   GG   G+ V     S+         ++ +      
Sbjct: 138 AVSDLEDAKAIAEKAGYPVIIKAASGGGGRGMKVCTSPDSLETLMQQAGSEAKAAFGDAT 197

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+Y+ +   +   V GD + +   +            K             +     
Sbjct: 198 VYIEKYLGNPRHIEIQVFGDGNGNAIHLGERDCSLQRRHQKVL----EEAPSPVLSQAER 253

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +  +   A   +G RG    +FL+   + + +++E+N 
Sbjct: 254 ERIGGVCAKAMADMGYRGAGTIEFLW--ENGEFYFIEMNT 291


>gi|229541904|ref|ZP_04430964.1| urea carboxylase [Bacillus coagulans 36D1]
 gi|229326324|gb|EEN91999.1| urea carboxylase [Bacillus coagulans 36D1]
          Length = 1200

 Score = 84.8 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 44/257 (17%), Positives = 91/257 (35%), Gaps = 32/257 (12%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+           I +         +   K  ++ +    GVP+ P    
Sbjct: 77  AIHPGYGFLSENSDFARACRKNGITFIGPEPEQMEVFALKHTARNMARKAGVPLLPGTDL 136

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQL 166
           I      ++    I  P ++K   GG  +G+ +   + ++          +SS    D +
Sbjct: 137 ITTLEDAVEQAAQIGYPVILKSTAGGGGIGMRICDDEAALRKSFKAVRHLASSNFKNDGV 196

Query: 167 LIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIY 224
            +E+Y+     +   + G+   +VT +           L+  +       PA  +P  + 
Sbjct: 197 YLEKYIAKARHVEVQIFGNRFGEVTALGE-----RDCSLQRRNQKVIEESPAPNLPQHVR 251

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
             +   A      +  R     +FL+DP +   F+LE+N             +    G +
Sbjct: 252 AAMLVSAKKLAATVNYRSAGTVEFLYDPDTLSFFFLEVNT-----------RLQVEHGVT 300

Query: 285 FR----ELLLWMVEDAS 297
                 +L+ WMV++A+
Sbjct: 301 EEVLGIDLVEWMVKEAA 317


>gi|167766698|ref|ZP_02438751.1| hypothetical protein CLOSS21_01204 [Clostridium sp. SS2/1]
 gi|167711635|gb|EDS22214.1| hypothetical protein CLOSS21_01204 [Clostridium sp. SS2/1]
          Length = 1155

 Score = 84.8 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 35/222 (15%), Positives = 85/222 (38%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       E   I +            DK+ SKQ+     VP+ P +  
Sbjct: 84  AIHPGYGFLSENPDFVDACEKNGITFIGPSSSLMRKMGDKISSKQMAIEADVPIIPGVDH 143

Query: 114 NRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS-----SWNHGD 164
               ++      + +  P ++K   GG   G+ ++   + +P +  ++      ++   D
Sbjct: 144 AVHGLEEVTKIANQVGYPVMLKASNGGGGRGMRIVHSAEEMPKEYAEARDESKKAFG-DD 202

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLD 222
           Q+ +E+Y+     +   ++GD    V  +           ++          PA  +P +
Sbjct: 203 QIFVEKYLKSPKHIEVQIIGDQYGHVVHLY-----DRDCSVQRRHQKVVEYAPAFSVPEE 257

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +++   +    + +G +     +FL D  +   +++E+N 
Sbjct: 258 VRQQIFEASIRLAKHVGYKNAGTLEFLVDADNNA-YFIEMNP 298


>gi|18310056|ref|NP_561990.1| biotin carboxylase [Clostridium perfringens str. 13]
 gi|18144735|dbj|BAB80780.1| acetyl-CoA carboxylase [Clostridium perfringens str. 13]
          Length = 450

 Score = 84.8 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 84/221 (38%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  FG   E+     + E   I +      A  L  +K  +++++    VPV P    
Sbjct: 77  AIHPGFGFLSENPRFAKMCEECNIEFIGPNWRAIELMGNKAMAREIMKKADVPVVPGYEG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL----DLLQSSSWNHGDQ 165
            I    F +     I  P ++K   GG   GI ++ K+            ++ +    D+
Sbjct: 137 EIESPEFALKIAKKIGFPVIVKASSGGGGKGIRIVYKEDDFISNYNTAKSEAQANFGDDK 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           + IE++V+    +   ++ D   +                +  +       P+  +  + 
Sbjct: 197 IYIERFVENPKHIEVQLLCDKHGNAL-----HLFERDCSAQRKNQKVLEEAPSSILSDEQ 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             ++ ++A  A +A+    +   +FL D  + + +++E+N 
Sbjct: 252 RDKLGKIAVKAAKAVNYSNVGTIEFLLDK-NGEFYFMEMNT 291


>gi|304395164|ref|ZP_07377048.1| urea carboxylase [Pantoea sp. aB]
 gi|304357417|gb|EFM21780.1| urea carboxylase [Pantoea sp. aB]
          Length = 1201

 Score = 84.8 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 36/234 (15%), Positives = 84/234 (35%), Gaps = 27/234 (11%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---ISPPYVIKP 132
            + +   G         K  ++ +  + GVP+     +     ++ H    +  P ++K 
Sbjct: 99  GLIFVGPGPQQLRTFGLKHTARALAKAEGVPLLEGSELLADLSEAHHAAESVGYPVMLKS 158

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQLLIEQYVD-GIELTCGVMGDASL 187
             GG  +G+ V +  Q++                   + +E+Y++    L   + GD   
Sbjct: 159 TAGGGGIGMRVCRDAQALSDAFETVQRLGQNNFSDAGVFLEKYIERARHLEVQIFGDGKG 218

Query: 188 DVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           +V  + V          K             +P  + + +   A    +A+  R     +
Sbjct: 219 EVIALGVRDCSIQRRNQK----VIEETPAPNLPAGMAEALCSAAIALGKAVNYRSAGTVE 274

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR----ELLLWMVEDAS 297
           F++D  +++ ++LE+N             +    G + +    +L+ WM+E A+
Sbjct: 275 FVYDSAAQQFYFLEVNT-----------RLQVEHGVTEQVWGVDLVKWMIELAA 317


>gi|254495894|ref|ZP_05108803.1| acetyl CoA carboxylase, biotin carboxylase subunit [Legionella
           drancourtii LLAP12]
 gi|254354876|gb|EET13502.1| acetyl CoA carboxylase, biotin carboxylase subunit [Legionella
           drancourtii LLAP12]
          Length = 446

 Score = 84.8 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 48/293 (16%), Positives = 99/293 (33%), Gaps = 54/293 (18%)

Query: 13  EVSLSSGKACASALEDAGFKVSQI--DVDRSVGLVL------------------------ 46
           E++L        A ++ G +   +  DVD+ +  V                         
Sbjct: 12  EIALR----ILRACKELGIQTVAVHSDVDKDLLHVRLADETVCIGPAPAQKSYLNIPAII 67

Query: 47  -AHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS 102
            A    D     +H  +G   E+     I+E     +         L  DK+ +   + +
Sbjct: 68  SAAEITDAV--AIHPGYGFLSENADFADIVEQSGFKFIGPRGDTIRLMGDKVSAIHAMKA 125

Query: 103 CGVPVCPS-----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL-- 155
            GVP  P         +  +++    I  P +IK   GG   G+ V+  + ++   +   
Sbjct: 126 AGVPCVPGSDGPLTEDDNRSLEIGRKIGYPVIIKAAGGGGGRGMRVVHSESNLLSAIALT 185

Query: 156 --QSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212
             ++ +  +   + +E++++    +   V+GD       +            K       
Sbjct: 186 RSEAKAAFNNATVYMEKFLENPRHVEFQVLGDGQGKAIHLGERDCSMQRRHQK-----VV 240

Query: 213 HVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              PA  I  ++ KE+      A Q +  RG    +FL+       +++E+N 
Sbjct: 241 EEAPAPGISAELRKEIGASVVKACQDLKYRGAGTFEFLY--QDGCFYFIEMNT 291


>gi|317497527|ref|ZP_07955846.1| pyruvate carboxylase [Lachnospiraceae bacterium 5_1_63FAA]
 gi|291558360|emb|CBL37160.1| pyruvate carboxylase [butyrate-producing bacterium SSC/2]
 gi|316895210|gb|EFV17373.1| pyruvate carboxylase [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 1153

 Score = 84.8 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 35/222 (15%), Positives = 85/222 (38%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       E   I +            DK+ SKQ+     VP+ P +  
Sbjct: 82  AIHPGYGFLSENPDFVDACEKNGITFIGPSSSLMRKMGDKISSKQMAIEADVPIIPGVDH 141

Query: 114 NRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS-----SWNHGD 164
               ++      + +  P ++K   GG   G+ ++   + +P +  ++      ++   D
Sbjct: 142 AVHGLEEVTKIANQVGYPVMLKASNGGGGRGMRIVHSAEEMPKEYAEARDESKKAFG-DD 200

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLD 222
           Q+ +E+Y+     +   ++GD    V  +           ++          PA  +P +
Sbjct: 201 QIFVEKYLKSPKHIEVQIIGDQYGHVVHLY-----DRDCSVQRRHQKVVEYAPAFSVPEE 255

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +++   +    + +G +     +FL D  +   +++E+N 
Sbjct: 256 VRQQIFEASIRLAKHVGYKNAGTLEFLVDADNNA-YFIEMNP 296


>gi|220906900|ref|YP_002482211.1| acetyl-CoA carboxylase biotin carboxylase subunit [Cyanothece sp.
           PCC 7425]
 gi|219863511|gb|ACL43850.1| acetyl-CoA carboxylase, biotin carboxylase [Cyanothece sp. PCC
           7425]
          Length = 448

 Score = 84.8 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 81/220 (36%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     I    +I +      A     DK  +K  +   GVP  P    
Sbjct: 78  AIHPGYGFLAENARFAEICADHQIVFIGPTPAAIRAMGDKSTAKATMQQAGVPTIPGSDG 137

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGDQ 165
            ++  +      + I  P +IK   GG   G+ ++++ + +         ++ +      
Sbjct: 138 LVMDEQLAQTIANQIGYPLMIKATAGGGGRGMRLVREAEELSRLFLAAQGEAEAAFGNPG 197

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           L +E+++D    +   ++ D+  +V  +            K             +   + 
Sbjct: 198 LYLEKFIDQPRHIEFQILADSYGNVIHLGERDCSIQRRHQKLL----EEAPSPALTSQLR 253

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +++ + A +A ++I   G    +FL D      +++E+N 
Sbjct: 254 EKMGQAAVMAAKSINYVGAGTVEFLLDSA-GHFYFMEMNT 292


>gi|325288980|ref|YP_004265161.1| urea carboxylase [Syntrophobotulus glycolicus DSM 8271]
 gi|324964381|gb|ADY55160.1| urea carboxylase [Syntrophobotulus glycolicus DSM 8271]
          Length = 1214

 Score = 84.8 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 38/256 (14%), Positives = 90/256 (35%), Gaps = 30/256 (11%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+           + +         L   K  ++++    GVP+     +
Sbjct: 77  AIHPGYGFLSENVDFAKACAEKGMIFIGPAPEQLELFGLKHSAREMAEKAGVPLPKGTGL 136

Query: 114 N---RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQL 166
                  + +   I  P ++K   GG  +G+ + +  +S+          + +    D +
Sbjct: 137 LANLEEALTAAGQIGYPVMLKSTAGGGGIGMRICQNAESLCAAYESVKYLAKTNFKDDGI 196

Query: 167 LIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
            +E Y+     +   + G  S ++  +            K             +P  I K
Sbjct: 197 FLESYIARARHIEVQIFGSRSGEIIAVGERDCSVQRRNQKVL----EETPAPGLPQHIRK 252

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS- 284
           E+   A    ++ G +     +FL+D  +++ ++LE+N             +    G + 
Sbjct: 253 EMHEAAVRLAKSAGYQNAGTVEFLYDTQAQQFYFLEVNT-----------RLQVEHGVTE 301

Query: 285 --FR-ELLLWMVEDAS 297
             +  +L+ WM+ +A+
Sbjct: 302 ELYGIDLVEWMIREAA 317


>gi|95929431|ref|ZP_01312174.1| pyruvate carboxylase [Desulfuromonas acetoxidans DSM 684]
 gi|95134547|gb|EAT16203.1| pyruvate carboxylase [Desulfuromonas acetoxidans DSM 684]
          Length = 1160

 Score = 84.8 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 73/221 (33%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       E   I +            +K+ ++ V    GVPV P    
Sbjct: 94  AIHPGYGFLSENPEFAEACERAGITFIGPTAEIQRRLGNKVAARHVALEAGVPVVPGTED 153

Query: 114 NRFTMDSQHLI----SPPYVIKPLKGGSSLGIIVIKKDQSIPL----DLLQSSSWNHGDQ 165
              T +   L       P ++K   GG   G+ V +    +         ++ +      
Sbjct: 154 PVKTEEEALLFAKGCGYPIMVKAASGGGGRGMRVARNKDELLEGLKSAASEAQAAFGDGT 213

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDI 223
           + +E++++    +   +MGD+  ++               K        + P   +  + 
Sbjct: 214 VFLEKFIENPKHIEVQIMGDSHGNIVHYFERDCSIQRRHQK-----VIELAPSPSLSQEK 268

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +EV   A      +G       +FL D    K +++E N 
Sbjct: 269 REEVCSHAMKIANEVGYLNAGTVEFLMDN-EGKFYFIETNP 308


>gi|308179019|ref|YP_003918425.1| acetyl-/propionyl-coenzyme A carboxylase subunit alpha
           [Arthrobacter arilaitensis Re117]
 gi|307746482|emb|CBT77454.1| acetyl-/propionyl-coenzyme A carboxylase alpha chain [Arthrobacter
           arilaitensis Re117]
          Length = 686

 Score = 84.8 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 51/228 (22%), Positives = 88/228 (38%), Gaps = 26/228 (11%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      LE   I +    + +  L  DK+RSK  V +  VPV P I  
Sbjct: 82  AVHPGYGFLSENVDFARALEAAGITFIGPPVNSINLMGDKIRSKNHVVAHQVPVVPGIAE 141

Query: 112 --LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL-----QSSSWNHGD 164
             L +   + +   I  P +IKP  GG   G+  ++    +P  L       ++++   D
Sbjct: 142 PGLSDEQLLAAAADIGYPLLIKPSAGGGGKGMFAVESADQLPEALASARRTAANAFG-DD 200

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI---- 219
            L +E+ V     +   V+ DA  +   +   +        K          PA +    
Sbjct: 201 TLFLERLVRNPRHIEVQVLADAQGNTVHLGERECSLQRRHQK-----VIEEAPAPLFENL 255

Query: 220 --PLDIYKEVQRLAFLAHQAIGCRGISRSDFLF-DPLSRKVFWLEINV 264
                I + +   A  A Q++G  G    +FL  D    + F++E+N 
Sbjct: 256 EHGAAIRERIGAAAVAAAQSVGYVGAGTVEFLVSDENPDEFFFMEMNT 303


>gi|330965355|gb|EGH65615.1| 3-methylcrotonyl-CoA carboxylase alpha subunit [Pseudomonas
           syringae pv. actinidiae str. M302091]
          Length = 649

 Score = 84.8 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 79/221 (35%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      +E   + +      A      K  +K ++   GVP+ P    
Sbjct: 81  AIHPGYGFLSENADFARAIEAAGLVFLGPPASAIDAMGSKSAAKSLMEQAGVPLVPGYHG 140

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
               +D    +   I  P ++K   GG   G+ V+++   +   L  +           +
Sbjct: 141 AAQDIDTFHAAAERIGYPVLLKATAGGGGKGMKVVEQASEMAEALASAQREALSSFGDAR 200

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           +L+E+YV G   +   V  D       +            K          PA  +  ++
Sbjct: 201 MLVEKYVLGPRHVEIQVFADQQGHCLYLNERDCSIQRRHQK-----VVEEAPAPGLTPEL 255

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            K +   A  A QAIG  G    +FL D    + F++E+N 
Sbjct: 256 RKAMGEAAVKAAQAIGYVGAGTVEFLLDAR-GEFFFMEMNT 295


>gi|320591326|gb|EFX03765.1| d-alanine ligase [Grosmannia clavigera kw1407]
          Length = 367

 Score = 84.8 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 59/249 (23%), Positives = 92/249 (36%), Gaps = 28/249 (11%)

Query: 77  IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPP-----YVIK 131
           +     G LA     DK    +++   G    P       T D   +   P      V K
Sbjct: 114 VRVIGQGPLAVERYDDKDYINRLLRGLGGFTLPRSWSLSATTDPAAVHELPGIAYSVVGK 173

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P +G  S G+ V      +   + +  S      +LIEQ++ G E+T  VM  A    T+
Sbjct: 174 PARGRGSYGVKVCHTADELQDHVRELQSETMH--VLIEQFLAGEEVTVTVMPPAVAGKTD 231

Query: 192 I-AVPKSDFYSYELKYSS--------LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
             A+P    + +E   +          NS  V  +     +Y+ + R      +A+G   
Sbjct: 232 YWALPVVTRFDHEDGIAPSNGSVAVSTNSRAVSDSDKDP-LYRALMRECEAVARALGTTA 290

Query: 243 ISRSDFLF--DPLSRKVFWLEINVQPGMT---------PVSIFPEMAAYAGYSFRELLLW 291
             R D     D  S K   L++N +P MT            +    A   G+ +RELL  
Sbjct: 291 PIRVDARRHRDAASSKFALLDVNTKPNMTGPGRPGRDDQACLTLLAAEALGWEYRELLER 350

Query: 292 MVEDASCLR 300
           ++  AS LR
Sbjct: 351 ILRTASVLR 359


>gi|154303972|ref|XP_001552392.1| hypothetical protein BC1G_08870 [Botryotinia fuckeliana B05.10]
 gi|150854454|gb|EDN29646.1| hypothetical protein BC1G_08870 [Botryotinia fuckeliana B05.10]
          Length = 345

 Score = 84.8 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 41/220 (18%), Positives = 80/220 (36%), Gaps = 16/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            LH  +G   E+           + +      A     +K RSK ++ + GVP  P    
Sbjct: 103 ALHPGYGFLSENSAFAKRCVEEGLVFIGPPWKAIEAMGNKSRSKDIMINAGVPCIPGYHG 162

Query: 113 ---VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
                   ++    I  P ++K +KGG   G+ + + ++     L  + S        D 
Sbjct: 163 ENQEPEHLLNEAKKIGFPVMVKAVKGGGGKGMRIAQTEREFLEKLESAKSEGRNSFGDDV 222

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           +L+E+Y+     +   V  D   +   +            K             +  +I 
Sbjct: 223 MLVEKYIATPRHIEVQVFADKHGNAVALGERDCSLQRRHQKIL----EEAPAPNLAENIR 278

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +++   A  A  A+G  G    +F+FD  + + F++E+N 
Sbjct: 279 QDLWEKARAAALAVGYEGAGTVEFIFDNDTNEFFFMEMNT 318


>gi|169335683|ref|ZP_02862876.1| hypothetical protein ANASTE_02103 [Anaerofustis stercorihominis DSM
           17244]
 gi|169258421|gb|EDS72387.1| hypothetical protein ANASTE_02103 [Anaerofustis stercorihominis DSM
           17244]
          Length = 456

 Score = 84.8 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 84/220 (38%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  FG   E+     ++    + +            +K  +++++   GVPV P    
Sbjct: 77  AVHPGFGFLSENPKFARLVIGCGLIFIGPNPDVIEKLGNKSEARKMMIEAGVPVVPGSKE 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSWNHGDQ 165
            I      +     IS P +IK   GG   G+ +++ ++         + ++ +      
Sbjct: 137 IIKTADEGIKLAKEISYPVIIKASNGGGGRGMRIVRSEEEFEDNFNNAVSEAKACFGDSD 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+Y++    +   ++GD   +V  +      F     K       HV    +  +I 
Sbjct: 197 VYLEKYIENPKHIEIQLLGDKHGNVIHLFERDCSFQRRNQKLIEEAPCHV----LDDNIR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K +   A  A + +G   +   +FL D    K +++E+N 
Sbjct: 253 KSMITDAVKACRHVGYDSVGTIEFLLDKS-GKYYFMEMNT 291


>gi|257056321|ref|YP_003134153.1| acetyl/propionyl-CoA carboxylase, alpha subunit [Saccharomonospora
           viridis DSM 43017]
 gi|256586193|gb|ACU97326.1| acetyl/propionyl-CoA carboxylase, alpha subunit [Saccharomonospora
           viridis DSM 43017]
          Length = 1830

 Score = 84.8 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 45/232 (19%), Positives = 85/232 (36%), Gaps = 14/232 (6%)

Query: 42  VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   L   + D A+ V  G   ED     + + L + +      A     DK+ +K +  
Sbjct: 71  LEQALRETEADAAW-VGWGFVAEDPAFAELCDRLGVTFIGPSAEAMRKLGDKIGAKLLAE 129

Query: 102 SCGVPVCPSILVNRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL-- 155
             GVPV P        +D    +   I  P ++K   GG   GI V+  +  +       
Sbjct: 130 EVGVPVAPWSRGPVEDLDAARAAAERIGYPLMLKATAGGGGRGIRVVSSEAELVDAYERT 189

Query: 156 --QSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212
             ++        + +E+ V G   +   V+ D       + V          K    +++
Sbjct: 190 RSEAERAFGSGVVFLERLVTGARHVEVQVIADGQGTAWALGVRDCSVQRRNQKVIEESAS 249

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
                 +  +  +E++  A     A+G RG +  +FL+ P  +   +LE+N 
Sbjct: 250 ----PLLTPEQTEELKASAERLALAVGYRGAATVEFLYQPAEKLFAFLEVNT 297


>gi|85711997|ref|ZP_01043051.1| 3-methylcrotonyl-CoA carboxylase alpha chain [Idiomarina baltica
           OS145]
 gi|85694183|gb|EAQ32127.1| 3-methylcrotonyl-CoA carboxylase alpha chain [Idiomarina baltica
           OS145]
          Length = 667

 Score = 84.8 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 47/254 (18%), Positives = 89/254 (35%), Gaps = 30/254 (11%)

Query: 32  KVSQIDVDRSVGLVLAHLKPDLAFNV--------LHGNFG---EDGLVQAILELLEIPYT 80
           +   I    S    L   K D   NV        +H  +G   E+     + +  +I + 
Sbjct: 57  EAYYIGPAPSNESYL---KADTIINVAKSAGADAIHPGYGFLSENESFAELCQQNDIIFV 113

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD----SQHLISPPYVIKPLKGG 136
              + A A    K  +K ++   GVP+ P    +    D        +  P ++K   GG
Sbjct: 114 GPPVSAIAAMGSKSAAKAIMEEAGVPLVPGYHGSEQDEDTLFAKAKEVGFPLLLKAAYGG 173

Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNH----GDQLLIEQYVD-GIELTCGVMGDASLDVTE 191
              G+ V++ +Q     L  +          D++L E+++     +   V  D   +   
Sbjct: 174 GGKGMRVVESEQDFKSALSSAKREAKSSFGNDKVLFERFIRNPRHVEIQVFCDQHGNAVY 233

Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
           +A          ++          PA  +     + +   A  A +AI   G    +FL+
Sbjct: 234 LAE-----RDCSVQRRHQKVIEEAPAPALSETTRQAMGEAAVKAAKAIDYVGAGTVEFLY 288

Query: 251 DPLSRKVFWLEINV 264
           D    + F++E+N 
Sbjct: 289 DAS-GEFFFMEMNT 301


>gi|120556352|ref|YP_960703.1| acetyl-CoA carboxylase, biotin carboxylase [Marinobacter aquaeolei
           VT8]
 gi|120326201|gb|ABM20516.1| acetyl-CoA carboxylase, biotin carboxylase [Marinobacter aquaeolei
           VT8]
          Length = 448

 Score = 84.8 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 33/218 (15%), Positives = 77/218 (35%), Gaps = 20/218 (9%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-----ILV 113
           +G   E+      +E     +         L  +K+ + + +   GVP  P         
Sbjct: 84  YGFLAENADFAEQVEKSGFRFIGPRAETIRLMGNKVSAIEAMKKAGVPTVPGSDGPLTDD 143

Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGDQLLI 168
           +  T+     I  P +IK   GG   G+ V+  + ++   +        +++     + +
Sbjct: 144 DERTLKLAKQIGYPVMIKAASGGGGRGMQVVHSEAALLKAVQITQSEAKNAFG-DPTVYL 202

Query: 169 EQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKE 226
           E++++    +   V+ D   +V              ++  +       PA  I  +  + 
Sbjct: 203 EKFLETPRHVEVQVLADMHGNVI-----HLGDRDCSMQRRNQKVIEEAPAPNINQESRER 257

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +    A + IG  G    +FL+     + +++E+N 
Sbjct: 258 TLKACVDACKEIGYVGAGTFEFLY--QDGEFYFIEMNT 293


>gi|297194259|ref|ZP_06911657.1| acetyl/propionyl CoA carboxylase alpha subunit [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|197720551|gb|EDY64459.1| acetyl/propionyl CoA carboxylase alpha subunit [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 663

 Score = 84.8 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 45/222 (20%), Positives = 88/222 (39%), Gaps = 19/222 (8%)

Query: 57  VLHGNFG---ED-GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--- 109
            +H  +G   E+ G  QA  E   + +      A +L  DK+R+K+ V + GVPV P   
Sbjct: 79  AVHPGYGFLAENAGFAQACAE-AGLVFIGPPPSAISLMGDKIRAKETVKAAGVPVVPGSS 137

Query: 110 -SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GD 164
            S L +     +   I  P ++KP  GG   G+ + + + ++  ++  +          D
Sbjct: 138 GSGLSDEELAAAAREIGMPVLLKPSAGGGGKGMRLTRVESALMDEIAAARREARASFGDD 197

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            LL+E+++D    +   V+ D   +V  +   +        K             +    
Sbjct: 198 TLLVERWIDRPRHIEIQVLADGHGNVVHLGERECSLQRRHQKII----EEAPSVLLDEAT 253

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLS-RKVFWLEINV 264
              +   A  A ++ G RG    +F+       + +++E+N 
Sbjct: 254 RTAMGEAAVQAARSCGYRGAGTVEFIVPGTDPSQYYFMEMNT 295


>gi|126726901|ref|ZP_01742740.1| Pyruvate carboxylase [Rhodobacterales bacterium HTCC2150]
 gi|126703859|gb|EBA02953.1| Pyruvate carboxylase [Rhodobacterales bacterium HTCC2150]
          Length = 1161

 Score = 84.8 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 78/221 (35%), Gaps = 18/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       +   I +            DK  +++V    GVPV P+  V
Sbjct: 93  AIHPGYGLLSENPEFVDACDAAGIAFIGPRAETMRQLGDKASARRVAMEAGVPVVPATEV 152

Query: 114 NRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-----SSSWNHGD 164
               MD        +  P+++K   GG   G+  I  +  +   +++      +++ +G+
Sbjct: 153 LGDDMDEVRRMADEVGYPFMLKASWGGGGRGMRPIMHEGELVEKVMEGRREAEAAFGNGE 212

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
             L         +   ++GD   ++              ++  +       PA  +  + 
Sbjct: 213 GYLERLVQRARHVEVQILGDKYGEIY-----HLFERDCSVQRRNQKVVERAPAPYLSEEQ 267

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             E+  L       +G       +FL D  + + F++E+N 
Sbjct: 268 RAEICELGRKICAHVGYECAGTVEFLMDMDTEEFFFIEVNP 308


>gi|6942169|gb|AAF32338.1|AF218939_6 acetyl-CoA carboxylase [Bacillus subtilis]
          Length = 430

 Score = 84.8 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 33/221 (14%), Positives = 82/221 (37%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       +   I +        A    K+++++ +   GVPV P +  
Sbjct: 63  AIHPGYGLLSENSRFAQRCKEENIVFIGPSPAVIAKIGSKIKARKAMEEAGVPVVPGVSE 122

Query: 114 NRFTMDSQHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
           +   + +  L    I  P ++K   GG  +G+ ++  ++++         +++ +     
Sbjct: 123 SLGDIQAACLAASEIGYPVMLKASAGGGGIGMQLVPDEEALIKAYEGNKKRAADFFGDGS 182

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           + IE+ ++    +   ++ D                   ++          P+  +  ++
Sbjct: 183 MYIEKVIEHARHIEIQILADHHGHAV-----HLFERDCSVQRRHQKVIEEAPSPFVDDEL 237

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             ++   A  A +AIG       +FL D      ++LE+N 
Sbjct: 238 RMKIGETAVKAAKAIGYANAGTIEFLVDENKN-FYFLEMNT 277


>gi|84515421|ref|ZP_01002783.1| acetyl-CoA carboxylase [Loktanella vestfoldensis SKA53]
 gi|84510704|gb|EAQ07159.1| acetyl-CoA carboxylase [Loktanella vestfoldensis SKA53]
          Length = 448

 Score = 84.8 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 75/220 (34%), Gaps = 18/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---- 109
            +H  +G   E+      +E   + +         +  DK+ +K  + + GVP  P    
Sbjct: 77  AIHPGYGFLSENAAFVQAVEDHGLTFIGPTAEHIRIMGDKITAKDTMKALGVPCVPGSDG 136

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGDQ 165
            +   +        +  P +IK   GG   G+ V      +         ++ +    D+
Sbjct: 137 GVPTLKDAQRVGEEVGYPVIIKATAGGGGRGMKVALTAADMEKAFHGARAEAKAAFGNDE 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+Y+     +   V GD   +   +            K             I  ++ 
Sbjct: 197 VYIEKYLTTPRHIEIQVFGDGKGNAVHLGERDCSLQRRHQKVF----EEAPGPVITPELR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             + ++   A  AI   G    +FLF   + + +++E+N 
Sbjct: 253 ARIGKVCADAVAAINYIGAGTIEFLF--ENDEFYFIEMNT 290


>gi|158426026|ref|YP_001527318.1| allophanate hydrolase subunit 2 [Azorhizobium caulinodans ORS 571]
 gi|158332915|dbj|BAF90400.1| allophanate hydrolase subunit 2 [Azorhizobium caulinodans ORS 571]
          Length = 1176

 Score = 84.8 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 41/251 (16%), Positives = 92/251 (36%), Gaps = 27/251 (10%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
           +G   E+      L    I +             K  ++++  + GVP+ P   +     
Sbjct: 82  YGFLSENVAFAERLAAEGIAFIGPKPKHLRAFGLKHTARELAQASGVPLLPGTGLIDSVD 141

Query: 119 DS---QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ----SSSWNHGDQLLIEQY 171
           ++      IS P ++K   GG  +G+ +    Q +     +    + +     ++ +E++
Sbjct: 142 EALAAAEAISYPVMLKSTAGGGGIGMQLCADAQELAAAFERVQRTARASFGDARVYLERF 201

Query: 172 V-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQR 229
           V +   +   + G+    V  +           L+  +       PA + P  +   +  
Sbjct: 202 VAEARHVEVQIFGNGQGRVVALGE-----RDCSLQRRNQKVIEETPAPLLPDAVRTRLHA 256

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI---FPEMAAYAGYSFR 286
            A    +++G       +F++DP   + ++LE+N +       +    P   A  G    
Sbjct: 257 AAVALGESVGYASAGTVEFIYDPAREEFYFLEVNTR-------LQVEHPVTEAVFGI--- 306

Query: 287 ELLLWMVEDAS 297
           +L+ WMV  A+
Sbjct: 307 DLVEWMVRQAA 317


>gi|150005616|ref|YP_001300360.1| pyruvate carboxylase subunit A [Bacteroides vulgatus ATCC 8482]
 gi|294778574|ref|ZP_06743996.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Bacteroides
           vulgatus PC510]
 gi|149934040|gb|ABR40738.1| pyruvate carboxylase subunit A [Bacteroides vulgatus ATCC 8482]
 gi|294447523|gb|EFG16101.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Bacteroides
           vulgatus PC510]
          Length = 503

 Score = 84.8 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 40/223 (17%), Positives = 86/223 (38%), Gaps = 23/223 (10%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       +   I +            DK+ +++ + + GVPV P    
Sbjct: 77  AIHPGYGFLSENADFARRCKEEGIIFIGPSAETMEAMGDKIAARKRMIAAGVPVVPGTEQ 136

Query: 114 NRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
              + +      + I  P ++K   GG   G+ +I  +  +      + S +      D 
Sbjct: 137 PLQSAEEAVRICNEIGYPVMLKASMGGGGKGMRLIHSEDEVVEAYNTARSESMSSFGDDT 196

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK---IPL 221
           + +E++V+    +   ++GD   +V  +       +  E      N   V  +    +  
Sbjct: 197 VYLEKFVEEPHHIEFQILGDNHGNVIHL-------FDRECSVQRRNQKIVEESPSPFLTP 249

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           ++ +E+   A  A +A+   G    +FL D  +R  ++LE+N 
Sbjct: 250 ELRQEMGEKAVAAARAVNYSGAGTIEFLVDK-NRDFYFLEMNT 291


>gi|150017607|ref|YP_001309861.1| acetyl-CoA carboxylase, biotin carboxylase [Clostridium
           beijerinckii NCIMB 8052]
 gi|149904072|gb|ABR34905.1| acetyl-CoA carboxylase, biotin carboxylase [Clostridium
           beijerinckii NCIMB 8052]
          Length = 447

 Score = 84.8 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 38/237 (16%), Positives = 82/237 (34%), Gaps = 21/237 (8%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRS 96
           +++  V  H K D     +H  +G   E+     + E   I +        +L  DK  +
Sbjct: 64  QNILSVAIHAKVD----AIHPGYGFLSENTNFAQMCEEFGIKFIGPCPEIISLMGDKSNA 119

Query: 97  KQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI-- 150
           +  +   GVP  P     I      +     I  P ++K   GG   G+ V+  +  +  
Sbjct: 120 RDTMKRAGVPTVPGTDGEIQNINEAIAIAKEIGYPVIVKASAGGGGKGMRVVNSEDELIS 179

Query: 151 --PLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYS 207
                  ++ ++     + +E+Y++    +   ++GD   +V  +            K  
Sbjct: 180 SIETAQKEAQNYFGNPMVYLEKYLEYTRHVEIQIIGDNYGNVVHLGERDCSIQRRHQK-- 237

Query: 208 SLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
                      +  D+   +   A    +AI    +   +FL +      +++E+N 
Sbjct: 238 --LVEESPSPALNEDLRNAMGEAAVRVAKAIKYNSVGTVEFLLNE-DNNFYFMEMNT 291


>gi|296331060|ref|ZP_06873534.1| pyruvate carboxylase [Bacillus subtilis subsp. spizizenii ATCC
           6633]
 gi|305674215|ref|YP_003865887.1| pyruvate carboxylase [Bacillus subtilis subsp. spizizenii str. W23]
 gi|296151704|gb|EFG92579.1| pyruvate carboxylase [Bacillus subtilis subsp. spizizenii ATCC
           6633]
 gi|305412459|gb|ADM37578.1| pyruvate carboxylase [Bacillus subtilis subsp. spizizenii str. W23]
          Length = 1148

 Score = 84.8 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 34/243 (13%), Positives = 88/243 (36%), Gaps = 21/243 (8%)

Query: 35  QIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSM 91
            ID    +  ++   K +   + +H  +G   E+       E   I +         +  
Sbjct: 61  PIDAYLDIEGIIDIAKRNKV-DAIHPGYGFLSENIHFAKRCEEEGIVFIGPKSEHLDMFG 119

Query: 92  DKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI----SPPYVIKPLKGGSSLGIIVIKKD 147
           DK+++++     G+PV P       T+++          P +IK   GG   G+ +++ +
Sbjct: 120 DKVKAREQAEKAGIPVIPGSDGPAETLEAVEQFGQTNGYPIIIKASLGGGGRGMRIVRSE 179

Query: 148 QSIPLDLL----QSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSY 202
             +         ++ +    D++ +E+ ++    +   V+GD   +V             
Sbjct: 180 SEVKEAYERAKSEAKAAFGNDEVYVEKLIENPKHIEVQVIGDKQGNVV-----HLFERDC 234

Query: 203 ELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
            ++        V P   +  ++  ++   A    + +        +FL    + + +++E
Sbjct: 235 SVQRRHQKVIEVAPSVSLSPELRNQICEAAVALAKNVNYINAGTVEFLV--ANNEFYFIE 292

Query: 262 INV 264
           +N 
Sbjct: 293 VNP 295


>gi|116095308|gb|ABJ60460.1| carbamoyl-phosphate synthase large subunit [Lactobacillus gasseri
           ATCC 33323]
          Length = 1071

 Score = 84.8 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 44/297 (14%), Positives = 97/297 (32%), Gaps = 38/297 (12%)

Query: 22  CASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ--- 69
           C  AL+  G++   I         D   S  L    L  +   NV      E  +VQ   
Sbjct: 586 CVKALQKMGYEAIVINSNPETVSTDFSISDKLYFEPLTLEDVLNVCDLEKPEGVIVQFGG 645

Query: 70  -------AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDS 120
                  A LE   +    + +     + D+    Q++    +     +        + +
Sbjct: 646 QTSINLAAGLERHGVKILGTTVKDLNRAEDRELFDQIIKKLKLNQPKGLTATTHEGVIKA 705

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P +++P        + ++     +   L           +L++ Y+DG E    
Sbjct: 706 AEELGYPVLVRPSYVLGGKAMEIVYNKSELEEYLHDHVDIAADHPILVDDYLDGRECDVD 765

Query: 181 VMGDAS---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQ 236
            + D     L      +  +  +S        +S  V P +    D+ +++  +      
Sbjct: 766 AICDGKDVLLPGIMEHIEHAGVHS-------GDSMAVYPPQTFTDDVKEKIMDVTRKLAL 818

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            + C GI    F+    + +V+ +E+N +   T     P ++   G    ++   ++
Sbjct: 819 TLNCVGIMNIQFIVR--NGEVYVIEVNPRASRT----VPFLSKITGIEMAQVATRVI 869



 Score = 74.4 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 49/289 (16%), Positives = 97/289 (33%), Gaps = 39/289 (13%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI---------DVD------------RSVGLV 45
           G ++E + S   G     AL + G++V  +         D               S+  +
Sbjct: 30  GQAAEFDYS---GTQACLALREEGYEVVLVNSNPATIMTDTTIADKVYIEPLTVESISRI 86

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +    PD     L G  G +  +      IL+ L I    + + +   + D+ + K++  
Sbjct: 87  IRQEYPDAILPTLGGQVGLNMALALAKTGILDELNIELLGTKLSSIEQAEDREKFKELCK 146

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G PV PS  VN     +     I  P +++P       G  +    + +         
Sbjct: 147 KLGEPVPPSKTVNTVEDALAFGDEIGYPIIVRPAFTMGGTGGGICHSHEELAEIAKNGLE 206

Query: 160 WNHGDQLLIEQYVDG---IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216
            +   + LIE+ + G   IE       D +  +            +     + +S    P
Sbjct: 207 LSPVTECLIEKSIAGYKEIEFEVMRDHDDNAMIVCCMENFDPVGIH-----TGDSIVFSP 261

Query: 217 AK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           ++ +    Y+ ++  +    +A+   G        DP S     +E+N 
Sbjct: 262 SQTLSDKEYQMLRDCSLRLIRALKIEGGCNVQLALDPNSFDYDVIEVNP 310


>gi|311110631|ref|ZP_07712028.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus gasseri
           MV-22]
 gi|311065785|gb|EFQ46125.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus gasseri
           MV-22]
          Length = 889

 Score = 84.8 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 44/297 (14%), Positives = 97/297 (32%), Gaps = 38/297 (12%)

Query: 22  CASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ--- 69
           C  AL+  G++   I         D   S  L    L  +   NV      E  +VQ   
Sbjct: 404 CVKALQKMGYEAIVINSNPETVSTDFSISDKLYFEPLTLEDVLNVCDLEKPEGVIVQFGG 463

Query: 70  -------AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDS 120
                  A LE   +    + +     + D+    Q++    +     +        + +
Sbjct: 464 QTSINLAAGLERHGVKILGTTVKDLNRAEDRELFDQIIKKLKLNQPKGLTATTHEGVIKA 523

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P +++P        + ++     +   L           +L++ Y+DG E    
Sbjct: 524 AEELGYPVLVRPSYVLGGKAMEIVYNKSELEEYLHDHVDIAADHPILVDDYLDGRECDVD 583

Query: 181 VMGDAS---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQ 236
            + D     L      +  +  +S        +S  V P +    D+ +++  +      
Sbjct: 584 AICDGKDVLLPGIMEHIEHAGVHS-------GDSMAVYPPQTFTDDVKEKIMDVTRKLAL 636

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            + C GI    F+    + +V+ +E+N +   T     P ++   G    ++   ++
Sbjct: 637 TLNCVGIMNIQFIVR--NGEVYVIEVNPRASRT----VPFLSKITGIEMAQVATRVI 687


>gi|146318446|ref|YP_001198158.1| carbamoyl phosphate synthase large subunit [Streptococcus suis
           05ZYH33]
 gi|145689252|gb|ABP89758.1| Carbamoylphosphate synthase large subunit [Streptococcus suis
           05ZYH33]
 gi|292558232|gb|ADE31233.1| Carbamoyl-phosphate synthase, large subunit [Streptococcus suis
           GZ1]
 gi|319758016|gb|ADV69958.1| carbamoyl phosphate synthase large subunit [Streptococcus suis
           JS14]
          Length = 1081

 Score = 84.8 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 32/232 (13%), Positives = 81/232 (34%), Gaps = 24/232 (10%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQHLISPPYV 129
           L    IP   + +     + D+   ++ +   G+P  P          +++   I  P +
Sbjct: 668 LAKAGIPILGTQVADLDRAEDRDLFEKALKDLGIPQPPGQTATNEEEALEAARKIGFPVL 727

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS--- 186
           ++P        + +++ ++ +   +  +   +    +L++ Y+ G E     + D     
Sbjct: 728 VRPSYVLGGRAMEIVENEEDLRSYMRTAVKASPEHPVLVDSYIVGRECEVDAISDGKDVL 787

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISR 245
           +      + ++  +S        +S  V P + +  ++   +          + C G+  
Sbjct: 788 IPGIMEHIERAGVHS-------GDSMAVYPPQTLSKEVQATIADYTKRLAIGLNCIGMMN 840

Query: 246 SDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEMAAYA----GYSFREL 288
             F+       V+ +E+N       P ++ V+  P          G S  EL
Sbjct: 841 IQFII--KDETVYVIEVNPRASRTVPFLSKVTDIPMAQVATKLILGQSLAEL 890



 Score = 73.6 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 49/296 (16%), Positives = 107/296 (36%), Gaps = 34/296 (11%)

Query: 25  ALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNVLHGNFG 63
           AL++ G+ V  ++        D+ +                +L   +PD     L G  G
Sbjct: 58  ALKEEGYSVVLVNSNPATIMTDKEIADKVYIEPITLEFVTRILRKERPDAFLPTLGGQTG 117

Query: 64  EDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFT 117
            +  ++     IL+ L +    + + A   + D+   KQ++     P+  S +V      
Sbjct: 118 LNMAMELSKAGILDELGVELLGTKLSAIDQAEDRDLFKQLMEDLNQPIPESTIVTTVDEA 177

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IE 176
           ++    I  P +++P       G  +   ++ +          +   Q LIE+ + G  E
Sbjct: 178 LEFAAEIGYPVIVRPAFTLGGTGGGMCANEEELREIAENGLKLSPVTQCLIERSIAGFKE 237

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +   VM DA+ +   + V   + +     ++  +        +     + ++  +    +
Sbjct: 238 IEYEVMRDAADNA--LVVCNMENFDPVGIHTGDSIVFAPTQTLSDIENQMLRDASLSIIR 295

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           A+   G        DP S K + +E+N  P ++  S     +   GY   +L   +
Sbjct: 296 ALKIEGGCNVQLALDPHSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAKI 347


>gi|88658256|ref|YP_507303.1| propionyl-CoA carboxylase, alpha subunit [Ehrlichia chaffeensis
           str. Arkansas]
 gi|88599713|gb|ABD45182.1| propionyl-CoA carboxylase, alpha subunit [Ehrlichia chaffeensis
           str. Arkansas]
          Length = 655

 Score = 84.8 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 83/220 (37%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      LE   I +      +  +  DK+ SK++  S  V + P    
Sbjct: 77  AVHPGYGFLSENADFPEKLEQYNIKFIGPSSTSIRMMADKITSKKIAESAKVNIIPGYMG 136

Query: 112 LVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
           +V+      +    I  P +IK   GG   G+ ++K  + I         +++      +
Sbjct: 137 IVDSVHEAKEIAKSIGFPVMIKATAGGGGKGMRIVKSSEEIEQAFTSATNEAAKNFRDGR 196

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+YV+    +   ++ D   ++  +   +     +  K             +  +  
Sbjct: 197 IFIEKYVELPRHIEIQIIADKHGNIVCLGERECSIQRHNQK----VIEETPSPFLDEETR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +++ +      + +G       +F+ D   ++ ++LE+N 
Sbjct: 253 QKMYQQCVNLAKKVGYYSAGTIEFIVD-QDKQFYFLEMNT 291


>gi|116492050|ref|YP_803785.1| pyruvate carboxylase [Pediococcus pentosaceus ATCC 25745]
 gi|116102200|gb|ABJ67343.1| Pyruvate carboxylase [Pediococcus pentosaceus ATCC 25745]
          Length = 1141

 Score = 84.8 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 79/221 (35%), Gaps = 20/221 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+ +    +E   I +         +  DK+++K      GVP  P    
Sbjct: 77  AIHPGYGFLSENAVFARAVEAAGIKFIGPRPELLEMFGDKLQAKNAAIKAGVPTIPGTEK 136

Query: 114 NRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
               +D           P  +K   GG   G+ ++   Q +      + S        D+
Sbjct: 137 PVKDVDDALNFAEQFGYPIFVKSAAGGGGKGMRIVHHQQEMREAFKMAQSEASSSFGDDE 196

Query: 166 LLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDI 223
           + +E+Y VD I +   V+ D   ++  +    S       K          PA  I   +
Sbjct: 197 IYLERYLVDPIHIEVQVVADEHGEMVHLYERNSSIQRRHQK-----IIEFAPAVGISATV 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             ++++ A    +++     +  +FL      + +++E+N 
Sbjct: 252 RDQIRKAALKLLKSVDYSNAATIEFLV--EGNQFYFMEVNP 290


>gi|85067519|gb|ABC69245.1| putative geranyl-CoA carboxylase alpha subunit [Pseudomonas
           citronellolis]
          Length = 662

 Score = 84.8 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 69/220 (31%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       E   I +    + A  L   K  SK  +    VP  P    
Sbjct: 79  AVHPGYGFLSENAEFAHACEAAGIVFIGPSVEAIHLMGSKRLSKLAMLEASVPCIPGYEG 138

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS-----SWNHGD 164
                         I  P +IK   GG   G+ +++    +   L  +      ++   +
Sbjct: 139 AEQDDATLAREAERIGYPLMIKASAGGGGRGMRLVQAADELAAQLRTARSEALNAFGSDE 198

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
            +L +  +    +   V GD+  ++  +            K             +  ++ 
Sbjct: 199 LILEKAVIRPRHVEIQVFGDSHGNLVYLGERDCSVQRRHQK----VIEEAPCPVLSAELR 254

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +   A  A   +   G    +FL D      ++LE+N 
Sbjct: 255 QAMGEAAVKAAARVNYIGAGTVEFLLDAS-GAFYFLEMNT 293


>gi|83772212|dbj|BAE62342.1| unnamed protein product [Aspergillus oryzae]
          Length = 524

 Score = 84.8 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 43/213 (20%), Positives = 89/213 (41%), Gaps = 13/213 (6%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
           +G   E     + +    I     G    + + DK+++KQ+ + C VPV P++  +   +
Sbjct: 86  YGFLSESAEFASRMHDAGITVIGPGPETLSCTGDKLKAKQLATQCKVPVLPAMPRSTSDL 145

Query: 119 DS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VD 173
                    +  P +IK + GG   GI +++++  +   +  +++ +    + +E+  VD
Sbjct: 146 KEIRTFARQVGYPIMIKAVDGGGGRGIRLVRQEGELEHAVRAATNESPSQTVFVEKAAVD 205

Query: 174 GIE-LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLA 231
           G   +   V+GD       I V         L+          P+ +   ++ ++V   A
Sbjct: 206 GFHHVEVQVVGDG------IDVCHLWERDCSLQRRFQKVVEFAPSLMQNREVVEQVLNAA 259

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
               +AI  R +   +FL     R+ ++LEIN 
Sbjct: 260 LRMAKAIRYRSLGTVEFLVHNHRREFYFLEINP 292


>gi|326431414|gb|EGD76984.1| 3-methylcrotonyl CoA carboxylase [Salpingoeca sp. ATCC 50818]
          Length = 619

 Score = 84.8 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 46/220 (20%), Positives = 86/220 (39%), Gaps = 18/220 (8%)

Query: 58  LHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
           +H  +G   E+     + E   I +      A      K  SK+++   GVP+       
Sbjct: 35  IHPGYGFLSENSDFANLCEQEGITFIGPPASAILSMGSKSESKEIMEPSGVPIVKGYHGE 94

Query: 115 RFT----MDSQHLISPPYVIKPLKGGSSLGIIVIKKD----QSIPLDLLQSSSWNHGDQL 166
                  +D    I  P +IK +KGG   G+ V+ ++    +++ +   +S      D++
Sbjct: 95  NQDPSFLLDQARDIGFPVLIKAVKGGGGKGMRVVMQEKDFMENLEMAKGESRKHFSDDRV 154

Query: 167 LIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIY 224
           LIE+YV     +   V  D   +   +           L+          PA  +  ++ 
Sbjct: 155 LIEKYVQRPRHVEVQVFADKYGNAVYL-----FERDCSLQRRHQKIIEEAPAPGLSPELR 209

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           KE+   A  A  A+G  G    +F+ D  + + F++E+N 
Sbjct: 210 KELGEAAVRAALAVGYVGAGTVEFIMDTTTHEFFFMEMNT 249


>gi|307947211|ref|ZP_07662546.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Roseibium sp.
           TrichSKD4]
 gi|307770875|gb|EFO30101.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Roseibium sp.
           TrichSKD4]
          Length = 448

 Score = 84.8 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 41/220 (18%), Positives = 81/220 (36%), Gaps = 18/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---- 109
            +H  +G   E+     ILE   I +         +  DK+++KQ     G+PV P    
Sbjct: 77  AVHPGYGFLSENARFAEILEAHSIEFIGPTAEHIRIMGDKIQAKQTAKDLGIPVVPGSEG 136

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGDQ 165
            I  N         I  P ++K   GG   G+ V +    +   L     ++ +    D 
Sbjct: 137 GITSNEEAHRVADEIGYPVLVKAAAGGGGRGMKVAQSKADLETALSTARSEAKAAFGDDA 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           L +E+Y+     +   V+GD   +   +            K             + L+  
Sbjct: 197 LYMEKYLGKPRHIEIQVLGDGKGNAVHLGERDCSLQRRHQKVL----EEAPSPCLNLEQR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            ++  +   A + +  RG+   +FL+   + + +++E+N 
Sbjct: 253 GKIGEVVASAMRKLKYRGVGTIEFLY--ENGEFYFIEMNT 290


>gi|261199396|ref|XP_002626099.1| carboxylase:pyruvate/acetyl-CoA/propionyl-CoA [Ajellomyces
           dermatitidis SLH14081]
 gi|239594307|gb|EEQ76888.1| carboxylase:pyruvate/acetyl-CoA/propionyl-CoA [Ajellomyces
           dermatitidis SLH14081]
          Length = 671

 Score = 84.8 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 36/203 (17%), Positives = 77/203 (37%), Gaps = 12/203 (5%)

Query: 69  QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD----SQHLI 124
           Q I E         G    A + DK+++K++  +CGVP+  ++      ++        +
Sbjct: 97  QRIWEEAGAKVIGPGWEVLARTGDKLQAKELAEACGVPILKAMKTPTNDINLISRFAAEV 156

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG--IELTCGVM 182
             P ++K + GG   GI  +K    +   L +++  +   ++ +E+   G    +   ++
Sbjct: 157 GYPVMVKAVDGGGGRGIRFVKGPDELQSALDRATGESPSKKVFVEKAAVGGFHHVEVQII 216

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCR 241
           GD +  V  +           ++          PA +    + + V   A      I   
Sbjct: 217 GDGTGQVRHLWE-----RDCSVQRRFQKIVECAPAMMKDRGLIRRVIEAALRIASEIKYL 271

Query: 242 GISRSDFLFDPLSRKVFWLEINV 264
            +   +FL      + ++LEIN 
Sbjct: 272 SLGTFEFLVSGELSEFYFLEINP 294


>gi|229591456|ref|YP_002873575.1| acetyl-CoA carboxylase biotin carboxylase subunit [Pseudomonas
           fluorescens SBW25]
 gi|229363322|emb|CAY50444.1| biotin carboxylase [Pseudomonas fluorescens SBW25]
          Length = 450

 Score = 84.8 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 80/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      +E   + +            DK+ +K+ +   GVP  P    
Sbjct: 77  AIHPGYGFLSENAGFAERIEAAGLTFIGPSAACIRTMGDKVAAKRAMREAGVPCVPGPDS 136

Query: 114 NRFTMDS-----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
              T D+        I  P ++K   GG   G+ V++ +  +   +     ++       
Sbjct: 137 TMPTDDASILAIAAEIGYPVIVKAAGGGGGRGMRVVQAEADLLAAIGLTREEARLAFGNP 196

Query: 165 QLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
           +L IE+++     +   V+ DA      +           L+          PA  I   
Sbjct: 197 ELYIEKFLGHPRHVEIQVLCDAHGHAIWLGC-----RDCSLQRRHQKVLEEAPAPGIDPA 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +  +V      A + IG RG+   +FL+     + F++E+N 
Sbjct: 252 LIAKVGERCAEACRRIGYRGVGTFEFLY--EDGEFFFIEMNT 291


>gi|146305738|ref|YP_001186203.1| urea amidolyase related protein [Pseudomonas mendocina ymp]
 gi|145573939|gb|ABP83471.1| urea amidolyase related protein [Pseudomonas mendocina ymp]
          Length = 1209

 Score = 84.8 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/215 (14%), Positives = 72/215 (33%), Gaps = 14/215 (6%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
           +G   E        E   I +             K R++++ +   VP+ P   + +   
Sbjct: 82  YGFLSESAEFADACEAAGIAFVGPTPAQIREFGLKHRARELAAQAQVPMAPGTGLLQSLA 141

Query: 119 DS---QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQLLIEQY 171
           ++      I  P ++K   GG  +G+       ++             +     + +E++
Sbjct: 142 EALSAADSIGYPVMLKTTAGGGGIGLTRCSDAAALASAYDSVKRMGEQFFSDAGVFLERF 201

Query: 172 VD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQR 229
           VD    +   + GD +       V         L+  +       PA  +P    + +  
Sbjct: 202 VDQARHVEVQIFGDGTG-----RVAALGERDCSLQRRNQKVVEETPAPNLPQATRERLHA 256

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            A    +++  R     +F++D      ++LE+N 
Sbjct: 257 AAVQLGESVQYRSAGTVEFIYDAARDDFYFLEVNT 291


>gi|296444963|ref|ZP_06886925.1| Carbamoyl-phosphate synthase L chain ATP-binding [Methylosinus
           trichosporium OB3b]
 gi|296257631|gb|EFH04696.1| Carbamoyl-phosphate synthase L chain ATP-binding [Methylosinus
           trichosporium OB3b]
          Length = 662

 Score = 84.8 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 80/220 (36%), Gaps = 19/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+           + +      A  L   K  +K ++ + G PV P    
Sbjct: 77  AVHPGYGFLSENADFAERCASAGLVFVGPSPRAMRLMGSKAEAKALMEASGAPVVPGFHG 136

Query: 114 NRFTM---DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQL 166
            +       +   I  P ++K   GG   G+ ++ +  ++   +     ++ +    D++
Sbjct: 137 AQDIEALTQAAERIGFPLLVKASAGGGGKGMRLVTEPATLREAIDSAKREALAAFGDDRV 196

Query: 167 LIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIY 224
           LIE++++    +   + GD+                   K          PA  +   + 
Sbjct: 197 LIEKHLERPRHIEVQIFGDSHGGCVAFPERDCSIQRRHQK-----IIEETPAPLLSASLR 251

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             ++  A  A +A+G  G    +FL    + + ++LE+N 
Sbjct: 252 DRLREAALAAGRAVGYFGAGTVEFLV--ENDEFYFLEMNT 289


>gi|225016827|ref|ZP_03706019.1| hypothetical protein CLOSTMETH_00739 [Clostridium methylpentosum
           DSM 5476]
 gi|224950401|gb|EEG31610.1| hypothetical protein CLOSTMETH_00739 [Clostridium methylpentosum
           DSM 5476]
          Length = 466

 Score = 84.8 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 78/220 (35%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  FG   E+       EL  + +      +  +  DK  +KQ +   GVPV P    
Sbjct: 96  AIHPGFGFLSENSSFVKTCELCGVTFIGPSPKSMDMMGDKAHAKQTMRRAGVPVVPGSDG 155

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSWNHGDQ 165
            +            I  P ++K   GG   GI  +  ++ +         ++ S+   D 
Sbjct: 156 VVTDIEEAKKIAAQIGYPVMVKASAGGGGRGIRKVDDERELESAMTAAKTEALSFFGDDG 215

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+++ +   +   ++ D   +V  +            K    + + ++      ++ 
Sbjct: 216 VYIEKFIVNPRHVEIQLLADKFGNVVHLGERDCSVQRRNQKMIEESPSPIM----TPELR 271

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +   A  A  A G       +FL D      +++E+N 
Sbjct: 272 HRMGTAARAAATACGYYNAGTVEFLVD-SDLNFYFMEMNT 310


>gi|146320640|ref|YP_001200351.1| carbamoyl phosphate synthase large subunit [Streptococcus suis
           98HAH33]
 gi|145691446|gb|ABP91951.1| Carbamoylphosphate synthase large subunit [Streptococcus suis
           98HAH33]
          Length = 1074

 Score = 84.8 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/232 (13%), Positives = 81/232 (34%), Gaps = 24/232 (10%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQHLISPPYV 129
           L    IP   + +     + D+   ++ +   G+P  P          +++   I  P +
Sbjct: 668 LAKAGIPILGTQVADLDRAEDRDLFEKALKDLGIPQPPGQTATNEEEALEAARKIGFPVL 727

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS--- 186
           ++P        + +++ ++ +   +  +   +    +L++ Y+ G E     + D     
Sbjct: 728 VRPSYVLGGRAMEIVENEEDLRSYMRTAVKASPEHPVLVDSYIVGRECEVDAISDGKDVL 787

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISR 245
           +      + ++  +S        +S  V P + +  ++   +          + C G+  
Sbjct: 788 IPGIMEHIERAGVHS-------GDSMAVYPPQTLSKEVQATIADYTKRLAIGLNCIGMMN 840

Query: 246 SDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEMAAYA----GYSFREL 288
             F+       V+ +E+N       P ++ V+  P          G S  EL
Sbjct: 841 IQFII--KDETVYVIEVNPRASRTVPFLSKVTDIPMAQVATKLILGQSLAEL 890



 Score = 73.6 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 49/296 (16%), Positives = 107/296 (36%), Gaps = 34/296 (11%)

Query: 25  ALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNVLHGNFG 63
           AL++ G+ V  ++        D+ +                +L   +PD     L G  G
Sbjct: 58  ALKEEGYSVVLVNSNPATIMTDKEIADKVYIEPITLEFVTRILRKERPDAFLPTLGGQTG 117

Query: 64  EDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFT 117
            +  ++     IL+ L +    + + A   + D+   KQ++     P+  S +V      
Sbjct: 118 LNMAMELSKAGILDELGVELLGTKLSAIDQAEDRDLFKQLMEDLNQPIPESTIVTTVDEA 177

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IE 176
           ++    I  P +++P       G  +   ++ +          +   Q LIE+ + G  E
Sbjct: 178 LEFAAEIGYPVIVRPAFTLGGTGGGMCANEEELREIAENGLKLSPVTQCLIERSIAGFKE 237

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +   VM DA+ +   + V   + +     ++  +        +     + ++  +    +
Sbjct: 238 IEYEVMRDAADNA--LVVCNMENFDPVGIHTGDSIVFAPTQTLSDIENQMLRDASLSIIR 295

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           A+   G        DP S K + +E+N  P ++  S     +   GY   +L   +
Sbjct: 296 ALKIEGGCNVQLALDPHSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAKI 347


>gi|237755850|ref|ZP_04584447.1| pyruvate carboxylase [Sulfurihydrogenibium yellowstonense SS-5]
 gi|237691986|gb|EEP60997.1| pyruvate carboxylase [Sulfurihydrogenibium yellowstonense SS-5]
          Length = 499

 Score = 84.8 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 78/220 (35%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+           I +        AL  DKM +K+ +   GV + P    
Sbjct: 102 AIHPGYGFLSENPEFAEYCVKQGIIFIGPKPEHIALFGDKMAAKKKMRELGVSILPGSDE 161

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSWNHGDQ 165
            I   +   +    I  P ++K   GG   G+ +++ +            ++  +     
Sbjct: 162 PISDLKKAKEIASEIGYPVILKAAYGGGGRGMRIVRSESEFETLFQSAYNEAKKFFGKGD 221

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+YV+    +   +M D   +V  +            K             +  ++ 
Sbjct: 222 VFIEKYVENPRHIEIQIMADKYGNVVHLGERDCSIQRRHQKI----VEIARSPSLDEEVK 277

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           KE+ R +  A   +G   +   ++L D  +   +++E+N 
Sbjct: 278 KELYRTSVKAMFKVGYENVGTIEYLVDE-NNNFYFIEMNT 316


>gi|94499475|ref|ZP_01306012.1| Allophanate hydrolase subunit 2 [Oceanobacter sp. RED65]
 gi|94428229|gb|EAT13202.1| Allophanate hydrolase subunit 2 [Oceanobacter sp. RED65]
          Length = 1222

 Score = 84.8 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 37/257 (14%), Positives = 87/257 (33%), Gaps = 32/257 (12%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+     + E  +I +         +   K  ++ +     VP+ P   +
Sbjct: 77  AIHPGYGFLSENSEFVNLCEQNDIAFIGPTTDQIQVFGLKHEARDLAEKANVPLAPGSGL 136

Query: 114 NRF---TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG----DQL 166
            +     +++   I  P ++K   GG  +G+ + +    +                 D +
Sbjct: 137 LKDLAAAIETAQQIGYPVMLKSTAGGGGIGMQLCQNQSDLENAFDSVKRLGSNNFSNDGI 196

Query: 167 LIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIY 224
            +E+Y+     +   V  D   +   I            +  +       PA  +   I 
Sbjct: 197 FLEKYITNARHIEVQVFADGKGNALAIGE-----RDCSSQRRNQKVVEECPAPNLSQSIR 251

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
           +++   A     ++  R     +F++D    + ++LE+N             +    G +
Sbjct: 252 EQLHNTAEALLASVNYRNAGTVEFIYDSDEEQFYFLEVNT-----------RLQVEHGVT 300

Query: 285 ---FR-ELLLWMVEDAS 297
              +  +L+ WM+  AS
Sbjct: 301 ETVYDIDLVEWMLRLAS 317


>gi|282851820|ref|ZP_06261183.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus gasseri
           224-1]
 gi|282557062|gb|EFB62661.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus gasseri
           224-1]
          Length = 1062

 Score = 84.8 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 44/297 (14%), Positives = 97/297 (32%), Gaps = 38/297 (12%)

Query: 22  CASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ--- 69
           C  AL+  G++   I         D   S  L    L  +   NV      E  +VQ   
Sbjct: 577 CVKALQKMGYEAIVINSNPETVSTDFSISDKLYFEPLTLEDVLNVCDLEKPEGVIVQFGG 636

Query: 70  -------AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDS 120
                  A LE   +    + +     + D+    Q++    +     +        + +
Sbjct: 637 QTSINLAAGLERHGVKILGTTVKDLNRAEDRELFDQIIKKLKLNQPKGLTATTHEGVIKA 696

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P +++P        + ++     +   L           +L++ Y+DG E    
Sbjct: 697 AEELGYPVLVRPSYVLGGKAMEIVYNKSELEEYLHDHVDIAADHPILVDDYLDGRECDVD 756

Query: 181 VMGDAS---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQ 236
            + D     L      +  +  +S        +S  V P +    D+ +++  +      
Sbjct: 757 AICDGKDVLLPGIMEHIEHAGVHS-------GDSMAVYPPQTFTDDVKEKIMDVTRKLAL 809

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            + C GI    F+    + +V+ +E+N +   T     P ++   G    ++   ++
Sbjct: 810 TLNCVGIMNIQFIVR--NGEVYVIEVNPRASRT----VPFLSKITGIEMAQVATRVI 860



 Score = 74.4 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 49/289 (16%), Positives = 97/289 (33%), Gaps = 39/289 (13%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI---------DVD------------RSVGLV 45
           G ++E + S   G     AL + G++V  +         D               S+  +
Sbjct: 21  GQAAEFDYS---GTQACLALREEGYEVVLVNSNPATIMTDTTIADKVYIEPLTVESISRI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +    PD     L G  G +  +      IL+ L I    + + +   + D+ + K++  
Sbjct: 78  IRQEYPDAILPTLGGQVGLNMALALAKTGILDELNIELLGTKLSSIEQAEDREKFKELCK 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G PV PS  VN     +     I  P +++P       G  +    + +         
Sbjct: 138 KLGEPVPPSKTVNTVEDALAFGDEIGYPIIVRPAFTMGGTGGGICHSHEELAEIAKNGLE 197

Query: 160 WNHGDQLLIEQYVDG---IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216
            +   + LIE+ + G   IE       D +  +            +     + +S    P
Sbjct: 198 LSPVTECLIEKSIAGYKEIEFEVMRDHDDNAMIVCCMENFDPVGIH-----TGDSIVFSP 252

Query: 217 AK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           ++ +    Y+ ++  +    +A+   G        DP S     +E+N 
Sbjct: 253 SQTLSDKEYQMLRDCSLRLIRALKIEGGCNVQLALDPNSFDYDVIEVNP 301


>gi|188589531|ref|YP_001921278.1| pyruvate carboxylase [Clostridium botulinum E3 str. Alaska E43]
 gi|188499812|gb|ACD52948.1| pyruvate carboxylase [Clostridium botulinum E3 str. Alaska E43]
          Length = 1146

 Score = 84.8 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 52/264 (19%), Positives = 100/264 (37%), Gaps = 32/264 (12%)

Query: 24  SAL-EDAGFKVSQIDVDRSVGLVLAHLKPDLAF--------NVLHGNFG---EDGLVQAI 71
            AL      +  QI   ++ G V A+L  D           + +H  +G   E+      
Sbjct: 41  RALFRTKAHEAYQIG--KNKGPVEAYLNIDEIIKLALKKNVDAIHPGYGFLSENPEFARR 98

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV----NRFTMDSQHLISPP 127
            E + I +            DK++SK V  + GVPV P +       +  M+   +   P
Sbjct: 99  CEEVGIEFIGPKSEMMDQLGDKIKSKIVAKNVGVPVIPGVEKPINCEKEAMEIAGMCGYP 158

Query: 128 YVIKPLKGGSSLGIIVIKKDQSIPLDLLQS-----SSWNHGDQLLIEQYVDG-IELTCGV 181
            +IK   GG   G+ +++ +  +    L +      ++   D + IE+Y++G   +   +
Sbjct: 159 VMIKAAAGGGGRGMRIVRNENELVDAFLSAKNEAKKAFGIDD-MFIEKYIEGPKHIEIQI 217

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGC 240
           +GD   +V  +            K        + PA  +  +  +E+   A    +A+  
Sbjct: 218 LGDKYGNVVHLYERDCSIQRRHQK-----VIEISPALSLTQEKREEICADALKIAKAVDY 272

Query: 241 RGISRSDFLFDPLSRKVFWLEINV 264
           R     +FL D      +++E+N 
Sbjct: 273 RNAGTLEFLVDMHGNH-YFIEMNP 295


>gi|111021199|ref|YP_704171.1| acetyl/propionyl-CoA carboxylase alpha subunit [Rhodococcus jostii
           RHA1]
 gi|110820729|gb|ABG96013.1| probable acetyl/propionyl-CoA carboxylase alpha subunit
           [Rhodococcus jostii RHA1]
          Length = 1828

 Score = 84.8 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 47/235 (20%), Positives = 82/235 (34%), Gaps = 14/235 (5%)

Query: 39  DRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQ 98
              +   L   K D  + V  G   ED     + E L I +      +  L  DK+ +K 
Sbjct: 69  HAELARALRESKADAVW-VGWGFVAEDPAFVEVCEQLGITFIGPPAESMRLLGDKVEAKL 127

Query: 99  VVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154
           +     VPV P     +            I  P +IK   GG   GI  +  +  + L L
Sbjct: 128 LAEKVEVPVAPWSGGPVATRADARRHAQAIGYPLIIKARSGGGGRGIRKVWSEDELELAL 187

Query: 155 L----QSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209
                ++        + IE+ V D   +   V+ D   +V    V          K    
Sbjct: 188 ERTQGEAQRSFGDPVVFIERLVTDARHVEVQVIADNFGNVWAPGVRDCSIQRKNQKVIEE 247

Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +S+      +  +    ++ ++    +A G RG    ++L+ P  +   +LE+N 
Sbjct: 248 SSS----PLLTTEQANHLRTVSAELVRAAGYRGAGTVEYLYQPEQKTFTFLEVNT 298


>gi|162139889|ref|YP_814898.2| carbamoyl phosphate synthase large subunit [Lactobacillus gasseri
           ATCC 33323]
 gi|238853376|ref|ZP_04643755.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus gasseri
           202-4]
 gi|238833948|gb|EEQ26206.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus gasseri
           202-4]
          Length = 1062

 Score = 84.8 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 44/297 (14%), Positives = 97/297 (32%), Gaps = 38/297 (12%)

Query: 22  CASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ--- 69
           C  AL+  G++   I         D   S  L    L  +   NV      E  +VQ   
Sbjct: 577 CVKALQKMGYEAIVINSNPETVSTDFSISDKLYFEPLTLEDVLNVCDLEKPEGVIVQFGG 636

Query: 70  -------AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDS 120
                  A LE   +    + +     + D+    Q++    +     +        + +
Sbjct: 637 QTSINLAAGLERHGVKILGTTVKDLNRAEDRELFDQIIKKLKLNQPKGLTATTHEGVIKA 696

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P +++P        + ++     +   L           +L++ Y+DG E    
Sbjct: 697 AEELGYPVLVRPSYVLGGKAMEIVYNKSELEEYLHDHVDIAADHPILVDDYLDGRECDVD 756

Query: 181 VMGDAS---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQ 236
            + D     L      +  +  +S        +S  V P +    D+ +++  +      
Sbjct: 757 AICDGKDVLLPGIMEHIEHAGVHS-------GDSMAVYPPQTFTDDVKEKIMDVTRKLAL 809

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            + C GI    F+    + +V+ +E+N +   T     P ++   G    ++   ++
Sbjct: 810 TLNCVGIMNIQFIVR--NGEVYVIEVNPRASRT----VPFLSKITGIEMAQVATRVI 860



 Score = 74.4 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 49/289 (16%), Positives = 97/289 (33%), Gaps = 39/289 (13%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI---------DVD------------RSVGLV 45
           G ++E + S   G     AL + G++V  +         D               S+  +
Sbjct: 21  GQAAEFDYS---GTQACLALREEGYEVVLVNSNPATIMTDTTIADKVYIEPLTVESISRI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +    PD     L G  G +  +      IL+ L I    + + +   + D+ + K++  
Sbjct: 78  IRQEYPDAILPTLGGQVGLNMALALAKTGILDELNIELLGTKLSSIEQAEDREKFKELCK 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G PV PS  VN     +     I  P +++P       G  +    + +         
Sbjct: 138 KLGEPVPPSKTVNTVEDALAFGDEIGYPIIVRPAFTMGGTGGGICHSHEELAEIAKNGLE 197

Query: 160 WNHGDQLLIEQYVDG---IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216
            +   + LIE+ + G   IE       D +  +            +     + +S    P
Sbjct: 198 LSPVTECLIEKSIAGYKEIEFEVMRDHDDNAMIVCCMENFDPVGIH-----TGDSIVFSP 252

Query: 217 AK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           ++ +    Y+ ++  +    +A+   G        DP S     +E+N 
Sbjct: 253 SQTLSDKEYQMLRDCSLRLIRALKIEGGCNVQLALDPNSFDYDVIEVNP 301


>gi|242309963|ref|ZP_04809118.1| biotin carboxylase [Helicobacter pullorum MIT 98-5489]
 gi|239523260|gb|EEQ63126.1| biotin carboxylase [Helicobacter pullorum MIT 98-5489]
          Length = 454

 Score = 84.8 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 85/223 (38%), Gaps = 17/223 (7%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS- 110
           D  F   +G   E+     I +   I +        AL  DK ++K+V+ + GVPV P  
Sbjct: 80  DAIFPG-YGFLSENQNFVEICKYHNIEFIGPNSEVMALMSDKSKAKEVMKNAGVPVIPGS 138

Query: 111 ---ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----G 163
              I      +     I  P ++K   GG   G+ +++ ++++    L + S        
Sbjct: 139 DGAIKSKEEALKLAKEIGYPVILKAAAGGGGRGMRIVQSEENMFNAYLAAESEAISAFGD 198

Query: 164 DQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPL 221
             + +E+++D    +   ++ D   +V  I           L+          PA  +  
Sbjct: 199 GTIYMEKFIDKPKHIEVQILADKHGNVLHIGE-----RDCSLQRRHQKLIEESPAPTLEP 253

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              K++   A  A +AI   G    +FL D      +++E+N 
Sbjct: 254 HTRKKLLETAIQATKAIKYVGAGTYEFLLDNEQN-FYFMEMNT 295


>gi|77360392|ref|YP_339967.1| urea carboxylase (alpha subunit) [Pseudoalteromonas haloplanktis
           TAC125]
 gi|76875303|emb|CAI86524.1| urea carboxylase (alpha subunit) [Pseudoalteromonas haloplanktis
           TAC125]
          Length = 667

 Score = 84.8 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 79/221 (35%), Gaps = 20/221 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       E   I +      +      K R+K+++++  VP+ P    
Sbjct: 81  CIHPGYGFLSENSTFANACEANNIVFVGPPASSIEAMGSKTRAKEIMAAANVPLVPGYYG 140

Query: 114 NRFT----MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
           ++            I  P +IK   GG   G+ V+         L     ++ +    D 
Sbjct: 141 DKQDPAFLQAEAEKIGYPVLIKAAFGGGGKGMRVVNNANEFISALEGAQREAVAGFGNDL 200

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           +L+E+YV+    +   V  D   +   +           L+          PA  +  ++
Sbjct: 201 VLLERYVNQPRHVEVQVFADNHGNCVYL-----GDRDCSLQRRHQKVIEEAPAPGLSDEL 255

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            KE+   A     AI  RG    +FL      + F++E+N 
Sbjct: 256 RKEMGEAAVRCALAINYRGAGTVEFLL--CGDEFFFMEMNT 294


>gi|253751581|ref|YP_003024722.1| carbamoyl-phosphate synthase large chain [Streptococcus suis SC84]
 gi|253753482|ref|YP_003026623.1| carbamoyl-phosphate synthase large chain [Streptococcus suis P1/7]
 gi|253755692|ref|YP_003028832.1| carbamoyl-phosphate synthase large chain [Streptococcus suis BM407]
 gi|251815870|emb|CAZ51481.1| carbamoyl-phosphate synthase large chain [Streptococcus suis SC84]
 gi|251818156|emb|CAZ55953.1| carbamoyl-phosphate synthase large chain [Streptococcus suis BM407]
 gi|251819728|emb|CAR45577.1| carbamoyl-phosphate synthase large chain [Streptococcus suis P1/7]
          Length = 1059

 Score = 84.8 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/232 (13%), Positives = 81/232 (34%), Gaps = 24/232 (10%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQHLISPPYV 129
           L    IP   + +     + D+   ++ +   G+P  P          +++   I  P +
Sbjct: 646 LAKAGIPILGTQVADLDRAEDRDLFEKALKDLGIPQPPGQTATNEEEALEAARKIGFPVL 705

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS--- 186
           ++P        + +++ ++ +   +  +   +    +L++ Y+ G E     + D     
Sbjct: 706 VRPSYVLGGRAMEIVENEEDLRSYMRTAVKASPEHPVLVDSYIVGRECEVDAISDGKDVL 765

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISR 245
           +      + ++  +S        +S  V P + +  ++   +          + C G+  
Sbjct: 766 IPGIMEHIERAGVHS-------GDSMAVYPPQTLSKEVQATIADYTKRLAIGLNCIGMMN 818

Query: 246 SDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEMAAYA----GYSFREL 288
             F+       V+ +E+N       P ++ V+  P          G S  EL
Sbjct: 819 IQFII--KDETVYVIEVNPRASRTVPFLSKVTDIPMAQVATKLILGQSLAEL 868



 Score = 73.6 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 49/296 (16%), Positives = 107/296 (36%), Gaps = 34/296 (11%)

Query: 25  ALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNVLHGNFG 63
           AL++ G+ V  ++        D+ +                +L   +PD     L G  G
Sbjct: 36  ALKEEGYSVVLVNSNPATIMTDKEIADKVYIEPITLEFVTRILRKERPDAFLPTLGGQTG 95

Query: 64  EDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFT 117
            +  ++     IL+ L +    + + A   + D+   KQ++     P+  S +V      
Sbjct: 96  LNMAMELSKAGILDELGVELLGTKLSAIDQAEDRDLFKQLMEDLNQPIPESTIVTTVDEA 155

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IE 176
           ++    I  P +++P       G  +   ++ +          +   Q LIE+ + G  E
Sbjct: 156 LEFAAEIGYPVIVRPAFTLGGTGGGMCANEEELREIAENGLKLSPVTQCLIERSIAGFKE 215

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +   VM DA+ +   + V   + +     ++  +        +     + ++  +    +
Sbjct: 216 IEYEVMRDAADNA--LVVCNMENFDPVGIHTGDSIVFAPTQTLSDIENQMLRDASLSIIR 273

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           A+   G        DP S K + +E+N  P ++  S     +   GY   +L   +
Sbjct: 274 ALKIEGGCNVQLALDPHSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAKI 325


>gi|228477869|ref|ZP_04062483.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Streptococcus
           salivarius SK126]
 gi|228250359|gb|EEK09599.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Streptococcus
           salivarius SK126]
          Length = 456

 Score = 84.8 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 33/220 (15%), Positives = 77/220 (35%), Gaps = 16/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  FG   E+     + E + I +            DK+ ++  +    VPV P    
Sbjct: 77  AIHPGFGFLSENSKFATLCEEMNIKFIGPSGEVMDKMGDKINARAEMIKANVPVIPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
            +      ++  + +  P ++K   GG   GI  +  ++ +         ++ +      
Sbjct: 137 EVFTAEEALEVANRLGYPVMLKASAGGGGKGIRKVNTEEELAPAFESASQEAKAAFGNGA 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+ +     +   ++GD+  ++  +            K             I   + 
Sbjct: 197 MYIEKVIYPARHIEVQILGDSYGNIVHLGERDCSLQRNNQKVL----EESPSVAIGKTLR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            E+   A  A +A+        +FL D  + + +++E+N 
Sbjct: 253 HEIGSAAVRAAKAVNYENAGTIEFLLDEKTGQFYFMEMNT 292


>gi|2231979|gb|AAB62171.1| vancomycin resistance protein C2 [Enterococcus casseliflavus]
          Length = 120

 Score = 84.8 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 31/117 (26%), Positives = 56/117 (47%), Gaps = 8/117 (6%)

Query: 82  SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIKPLKG 135
            G+  SAL M+K    Q  ++ GV   P+IL+       + +         P   KP + 
Sbjct: 1   CGVAGSALCMNKWLLHQAAAAIGVQSAPTILLTNQANQQEQIEAFIQTHGFPVFFKPNEA 60

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192
           GSS GI  +   + I   L +  ++ +   +L+++ + G+E+ CG++G+ SL V   
Sbjct: 61  GSSKGITKVTCVEEIASALKE--AFTYCSAVLLQKNIAGVEIGCGILGNDSLTVGAC 115


>gi|193213520|ref|YP_001999473.1| acetyl-CoA carboxylase, biotin carboxylase [Chlorobaculum parvum
           NCIB 8327]
 gi|193086997|gb|ACF12273.1| acetyl-CoA carboxylase, biotin carboxylase [Chlorobaculum parvum
           NCIB 8327]
          Length = 447

 Score = 84.4 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 80/221 (36%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     +     I +            DK  +K  + + GVPV P    
Sbjct: 77  AIHPGYGFLAENADFSEVCHSSNIKFIGPSADMINRMGDKNTAKSTMIAAGVPVVPGSEG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS-----SSWNHGD 164
            +      +++   I  P +IKP  GG   G+ V+ ++  +  +L  +      ++ +  
Sbjct: 137 LVEDVGHAIETAKRIGYPVIIKPTAGGGGKGMRVVHEESQLEKNLKTAQSEAGMAFGNSG 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            + IE++++    +   ++ D   +V  +            K             +   +
Sbjct: 197 -VYIEKFLENPRHIEIQILADQHGNVLHLGERDCTVQRRHQK----LIEETPSPVVDEAL 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             ++   A  A +AI   G    +FL D      +++E+N 
Sbjct: 252 RTKMGEAAVAAAKAINYEGAGTIEFLLDKHKN-FYFMEMNT 291


>gi|119190005|ref|XP_001245609.1| hypothetical protein CIMG_05050 [Coccidioides immitis RS]
          Length = 687

 Score = 84.4 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 38/203 (18%), Positives = 82/203 (40%), Gaps = 12/203 (5%)

Query: 69  QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD----SQHLI 124
           Q + E         G    A + DK+++K++  +CGVPV  +I      ++        +
Sbjct: 114 QRMWEEAGAKVIGPGWEVLAQTGDKLQAKELAEACGVPVLKAITQPTSDLNVIKAFAAEV 173

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ-YVDG-IELTCGVM 182
             P +IK + GG   GI +++ + ++   + ++   +   ++ +E+  V+G   +   V+
Sbjct: 174 GYPVMIKAVDGGGGRGIRLVRSEDTLQASVDRAMGESPSKKVFVEKAAVEGYHHVEVQVI 233

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCR 241
           GD +  V  +           ++          PA +    +   V   A      I   
Sbjct: 234 GDGTGQVRHLWE-----RDCSIQRRFQKIVECAPALMKDRKLICLVIEAALRIANRIKYL 288

Query: 242 GISRSDFLFDPLSRKVFWLEINV 264
            +   +FL +  + + ++LEIN 
Sbjct: 289 SLGTFEFLVNEQASEFYFLEINP 311


>gi|78060441|ref|YP_367016.1| pyruvate carboxylase [Burkholderia sp. 383]
 gi|77964991|gb|ABB06372.1| Pyruvate carboxylase [Burkholderia sp. 383]
          Length = 1172

 Score = 84.4 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 42/246 (17%), Positives = 91/246 (36%), Gaps = 25/246 (10%)

Query: 33  VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLV-QAILELLEIPYTHSGILASA 88
            + +D+D  +  V      D     +H  +G   E+    QA+++   I +         
Sbjct: 66  AAYLDID-DILRVARQANVD----AIHPGYGFLSENPEFAQAVID-AGIRWIGPSPDVMR 119

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSLGIIVI 144
              +K+ ++    + GVPV P+       +         +  P ++K   GG   G+ V+
Sbjct: 120 TLGNKVAARNAAIAAGVPVMPATAPLPDDLAVCKALAEEVGYPLMLKASWGGGGRGMRVL 179

Query: 145 KKDQSI----PLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDF 199
           + ++ +    P+   ++ +    D++ +E+ V     +   V+GD    V  +       
Sbjct: 180 ENERDLETLLPVARREALAAFGNDEVYVEKLVRNARHVEVQVLGDTHGTVVHLYERDCTV 239

Query: 200 YSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
                K          PA  +  D    +   A    +A+G       +FL D  + + +
Sbjct: 240 QRRNQK-----VVERAPAPYLDHDGRHALCESALRLMRAVGYTHAGTVEFLMDADTGQFY 294

Query: 259 WLEINV 264
           ++E+N 
Sbjct: 295 FIEVNP 300


>gi|260576874|ref|ZP_05844857.1| pyruvate carboxylase [Rhodobacter sp. SW2]
 gi|259020911|gb|EEW24224.1| pyruvate carboxylase [Rhodobacter sp. SW2]
          Length = 1153

 Score = 84.4 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 76/221 (34%), Gaps = 18/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       +   I +            DK  +++V  + GVPV P+  V
Sbjct: 80  AIHPGYGLLSENPDFVDACDAAGIAFIGPKAATMRALGDKASARRVAMAAGVPVIPATEV 139

Query: 114 NRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-----SSSWNHGD 164
               ++        +  P ++K   GG   G+  I   + +   + +      +++ +G+
Sbjct: 140 LGDDLEDTKRQAAAVGYPLMLKASWGGGGRGMRPINGPEELADKVREGRREAEAAFGNGE 199

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
             L +  +    +   ++GD    +  +            K          PA  +    
Sbjct: 200 GYLEKMILRARHVEVQILGDKQGHIYHLYERDCTVQRRNQK-----VVERAPAPYLTPAQ 254

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             EV  L       +G       +FL D   +K +++E+N 
Sbjct: 255 RAEVCELGRRICAHVGYECAGTVEFLMDMDDQKFYFIEVNP 295


>gi|331695425|ref|YP_004331664.1| Biotin carboxylase., Propionyl-CoA carboxylase [Pseudonocardia
           dioxanivorans CB1190]
 gi|326950114|gb|AEA23811.1| Biotin carboxylase., Propionyl-CoA carboxylase [Pseudonocardia
           dioxanivorans CB1190]
          Length = 1873

 Score = 84.4 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 42/233 (18%), Positives = 81/233 (34%), Gaps = 14/233 (6%)

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
            +   L     D  +    G   E     A+ E L I +            DK+ SK + 
Sbjct: 82  ELERALRACGADAVWPG-WGFVSERADFVALCERLGITFVGPSSQVMHRLGDKIESKLLA 140

Query: 101 SSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-- 154
           +  GVP+       +            I  P ++K   GG   GI ++     +      
Sbjct: 141 AQVGVPMAAWSGGPVADVAEARRHAETIGYPLMVKATAGGGGRGIRLVTSPDELDEAFTR 200

Query: 155 --LQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
              ++S       + +E+ +  G  +   V+ DA+ DV  + V          K    ++
Sbjct: 201 ASSEASKTAGDATVFLERAIRGGRHVEVQVVADATGDVWTLGVRDCSVQRRNQKVIEESA 260

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +      +  +  + ++  A    +A G       +FL++P  R + +LE+N 
Sbjct: 261 STA----LDAEQEQLLRTSAAELVRAAGYVNAGTVEFLYEPKERLLSFLEVNT 309


>gi|315048811|ref|XP_003173780.1| methylcrotonoyl-CoA carboxylase subunit alpha [Arthroderma gypseum
           CBS 118893]
 gi|311341747|gb|EFR00950.1| methylcrotonoyl-CoA carboxylase subunit alpha [Arthroderma gypseum
           CBS 118893]
          Length = 712

 Score = 84.4 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 54/287 (18%), Positives = 97/287 (33%), Gaps = 44/287 (15%)

Query: 13  EVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNV--------------- 57
           E++L  G+         G +V+ +  D       A   P  A+N+               
Sbjct: 48  EIALRVGRTAGQH----GIRVTTLYTDPDAHAQHALSSP-FAYNLGETSAYLDGDRIIEI 102

Query: 58  --------LHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP 106
                   +H  +G   E+           + +      A     DK RSK+++++ GVP
Sbjct: 103 AKREGCKGIHPGYGFLSENAGFAKKCTDAGLIFIGPPPSAIDAMGDKSRSKEIMTAAGVP 162

Query: 107 VCPSILVNRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
             P        ++        I  P +IK +KGG   G+ + +        L  + S   
Sbjct: 163 CVPGYHGTNQDVNFLAAEAEKIKYPVLIKAVKGGGGKGMRIARTAAEFQDQLRSAKSEAK 222

Query: 163 ----GDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
                D +LIE+Y+     +   V  D   +   +            K            
Sbjct: 223 SSFGDDNMLIEKYITTPRHIEVQVFADQHGNSVALGERDCSVQRRHQKVL----EESPAP 278

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +P    K++   A  A  A+G  G    +F+FD  + + F++E+N 
Sbjct: 279 HLPEATRKDLWAKARDAALAVGYEGAGTVEFIFDNDTGEFFFMEMNT 325


>gi|153954992|ref|YP_001395757.1| carbamoyl phosphate synthase large subunit [Clostridium kluyveri
           DSM 555]
 gi|219855435|ref|YP_002472557.1| hypothetical protein CKR_2092 [Clostridium kluyveri NBRC 12016]
 gi|146347850|gb|EDK34386.1| CarB2 [Clostridium kluyveri DSM 555]
 gi|219569159|dbj|BAH07143.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 1072

 Score = 84.4 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 47/285 (16%), Positives = 108/285 (37%), Gaps = 45/285 (15%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGE--DGLV----- 68
           A++ AG++   I         D D S  L    L  D   NV+     E  DG++     
Sbjct: 580 AIKKAGYEAIIINNNPETVSTDFDISDKLYFDPLYIDDVMNVI---NEEKVDGVIVQFGG 636

Query: 69  QAILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGV--PVCPSILVNRFTMDS 120
           Q  L L        +    +   +  L+ D+ + + ++    +  P+  S+   +     
Sbjct: 637 QTALNLSKKLNDRGVNLLGTSFESIDLAEDREKFRILLKKLNINSPIGGSVTSLKEAYKL 696

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +++P        + V+   + +   L ++ + +    +L+++Y+ G E+   
Sbjct: 697 VSEIGYPVIVRPSYVIGGRAMKVVYNPEELERYLKEAVNLSKEHPVLVDKYILGREIEVD 756

Query: 181 VMGDAS---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQ 236
            + D     +      V ++  +S        +S  + PA  +P  + + ++       +
Sbjct: 757 AISDGQDLIIPGIMEHVERTGVHS-------GDSIAIYPASDLPEKVCQRIEEYTVNIAR 809

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPE 276
            +  +G+    + FD    K++ +E+N       P ++ V+  P 
Sbjct: 810 ELNVKGLLNVQYAFD--GDKIYVIEVNPRASRTVPILSKVTDVPM 852



 Score = 43.2 bits (101), Expect = 0.043,   Method: Composition-based stats.
 Identities = 43/280 (15%), Positives = 93/280 (33%), Gaps = 40/280 (14%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     A++  G +   ++ +                      S+  ++   +PD    
Sbjct: 29  SGTQACEAIKKEGIETVLVNSNPATIMTDKNIAHKTYVEPLTVESLEAIIKRERPDGV-- 86

Query: 57  VLHGNFG--------EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
            L G  G        E G +  IL+   +        +   + D+   K ++     P+ 
Sbjct: 87  -LAGFGGQTALNLAMELGKL-GILKKYNVELLGIKTESIKNAEDRESFKNLMEEIEEPIA 144

Query: 109 PSILVNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQL 166
            S +             +S P +I+P       G  +    +            +  +Q+
Sbjct: 145 LSTIATDLEQCKSFLDKVSLPIIIRPAYTLGGTGGGIADNYEEYLEICKNGLEESPINQI 204

Query: 167 LIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIY 224
           L+EQ + G  EL   +M D   +   + V   +     +   + +S  V P++ +    Y
Sbjct: 205 LLEQSLAGWKELEYEIMRDKKDN--CMVVCNMENLD-PVGIHTGDSIVVAPSQTLTDREY 261

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + ++R +    + +   G     F  +P   +   +E+N 
Sbjct: 262 QMLRRSSIKIIRKLKIEGGCNIQFALNPSGNEYMVIEVNP 301


>gi|271965644|ref|YP_003339840.1| acetyl-CoA carboxylase, biotin carboxylase [Streptosporangium
           roseum DSM 43021]
 gi|270508819|gb|ACZ87097.1| acetyl-CoA carboxylase, biotin carboxylase [Streptosporangium
           roseum DSM 43021]
          Length = 450

 Score = 84.4 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 40/219 (18%), Positives = 83/219 (37%), Gaps = 18/219 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   ED     I E   + +        +   DK +++++  + G+PV P    
Sbjct: 77  AVHPGYGFLSEDPDFAEICEAEGLTFIGPSASLLSRLGDKAQAREIAQAAGLPVLPGSSR 136

Query: 114 NRFTMDSQHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
           +  T++        I  P +IK   GG   G+ V++  + +P    Q+ +         +
Sbjct: 137 SLATLEQAKAVAGEIGYPVIIKATAGGGGRGMTVVRDARDLPRAYAQARAGAQAAFGDPR 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           L +E +++    +   V+GD +  V ++            K             +P ++ 
Sbjct: 197 LYLEMFLENARHIEVQVLGDGAGGVVQLGERDCSVQRRRQK----LIEETPAPGLPREMA 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
             +   A  A + +   G    +FL D      F++E+N
Sbjct: 253 DRICAAAVHAAREVNYAGAGTYEFLVD--GDDFFFMEVN 289


>gi|110799124|ref|YP_695776.1| biotin carboxylase [Clostridium perfringens ATCC 13124]
 gi|168210766|ref|ZP_02636391.1| acetyl-CoA carboxylase, biotin carboxylase [Clostridium perfringens
           B str. ATCC 3626]
 gi|110673771|gb|ABG82758.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Clostridium
           perfringens ATCC 13124]
 gi|170711212|gb|EDT23394.1| acetyl-CoA carboxylase, biotin carboxylase [Clostridium perfringens
           B str. ATCC 3626]
          Length = 450

 Score = 84.4 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 85/221 (38%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  FG   E+     + E   I +      A  L  +K  +++++    VPV P    
Sbjct: 77  AIHPGFGFLSENPRFAKMCEECNIEFIGPNWRAIELMGNKAMAREIMKKADVPVVPGYEG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL----DLLQSSSWNHGDQ 165
            I    F +     I  P ++K   GG   GI ++ K++           ++ +    D+
Sbjct: 137 EIESPEFALKIAKKIEFPVIVKASSGGGGKGIRIVYKEEDFISNYNTAKSEAQANFGDDK 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           + IE++V+    +   ++ D   +                +  +       P+  +  + 
Sbjct: 197 IYIERFVENPKHIEVQLLCDKHGNAL-----HLFERDCSAQRKNQKVLEEAPSSILSDEQ 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             ++ ++A  A +A+    +   +FL D  + + +++E+N 
Sbjct: 252 RDKLGKIAVKAAKAVNYSNVGTIEFLLDK-NGEFYFMEMNT 291


>gi|56964098|ref|YP_175829.1| carbamoyl phosphate synthase large subunit [Bacillus clausii
           KSM-K16]
 gi|56910341|dbj|BAD64868.1| carbamoyl-phosphate synthase pyrimidine-specific large chain
           [Bacillus clausii KSM-K16]
          Length = 1062

 Score = 84.4 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 51/286 (17%), Positives = 109/286 (38%), Gaps = 33/286 (11%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQIDVD---------------------RSVGLV 45
           G ++E + +   G     AL++ G++V  I+ +                       V  +
Sbjct: 21  GQAAEFDYA---GTQACQALKEEGYEVILINSNPATIMTDTAMADRVYIEPLTLEFVTRI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   +PD     L G  G +  ++     ILE  +I    + + A   + D+ + + +++
Sbjct: 78  IRKERPDGLLPTLGGQTGLNMALELKNAGILEQYQIELLGTKLDAIEQAEDREQFRALMN 137

Query: 102 SCGVPVCPSILVNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G PV  S +V+           I  P +I+P       G  +   D+ +   +     
Sbjct: 138 VLGEPVPESEIVHTLDEAFAFVETIGYPVIIRPAYTLGGTGGGIAYNDEDLAEIVASGLK 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
           ++   Q L+E+ + G  E+   VM D+  +   I V   + +     ++  +        
Sbjct: 198 YSPVTQCLVEKSIAGFKEVEYEVMRDSKDEA--IVVCNMENFDPVGVHTGDSIVFAPSQT 255

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +  + Y+ ++  A    +A+G  G     F  D  S + + +E+N 
Sbjct: 256 LSDNDYQMLRNSALSIIRALGIEGGCNVQFALDAHSDQYYIIEVNP 301



 Score = 62.1 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/218 (12%), Positives = 76/218 (34%), Gaps = 14/218 (6%)

Query: 68  VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQHLIS 125
           + A L    +    + +     + D+ + +Q +   G+P             +     I 
Sbjct: 642 LAAALAERGVSIIGTTLEDMDRAEDRDKFEQTLVELGIPQPLGKTATSVDGAVAIARKIG 701

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            P +++P        + ++  ++ +   +  +   N    +L+++Y+ G EL    + D 
Sbjct: 702 YPVLVRPSYVLGGRAMEIVYHEEELLRYMQTAVKVNPKHPVLVDRYLTGKELEVDAISDG 761

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGIS 244
           +       +   +           +S  V P + +P  + + +        + +   G+ 
Sbjct: 762 NDVYIPGIMEHIERAGVHS----GDSIAVYPPQTVPDHLKQRLIERTTSIAKGLNIVGLL 817

Query: 245 RSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277
              F++      V+ LE+N       P ++ ++  P  
Sbjct: 818 NIQFVWHKDD--VYVLEVNPRSSRTVPFLSKITGVPMA 853


>gi|110680549|ref|YP_683556.1| pyruvate carboxylase [Roseobacter denitrificans OCh 114]
 gi|109456665|gb|ABG32870.1| pyruvate carboxylase [Roseobacter denitrificans OCh 114]
          Length = 1146

 Score = 84.4 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 81/221 (36%), Gaps = 18/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       +   I +            DK  +++V    GVPV P+  V
Sbjct: 80  AIHPGYGLLSENPDFVDACDQNGIVFIGPRAETMRALGDKASARRVAIEAGVPVIPATEV 139

Query: 114 NRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-----SSSWNHGD 164
               M +       I  P ++K   GG   G+  I+++  +   +L+      +++ +G+
Sbjct: 140 LGDDMKAIKAEAKEIGYPLMLKASWGGGGRGMRPIQQEDELEEKVLEGRREAEAAFGNGE 199

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
             L +  +    +   ++GD   D+              ++  +       PA  +    
Sbjct: 200 GYLEKMILKARHVEVQILGDKHGDMY-----HLFERDCSVQRRNQKVVERAPAPYLTEAQ 254

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             EV +L +   + +        +FL D    K +++E+N 
Sbjct: 255 RAEVCKLGYDICKHVNYECAGTVEFLMDMDDGKFYFIEVNP 295


>gi|308048708|ref|YP_003912274.1| 3-methylcrotonoyl-CoA carboxylase, alpha subunit [Ferrimonas
           balearica DSM 9799]
 gi|307630898|gb|ADN75200.1| 3-methylcrotonoyl-CoA carboxylase, alpha subunit [Ferrimonas
           balearica DSM 9799]
          Length = 649

 Score = 84.4 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 82/221 (37%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H  +G   E+           I +      A A    K  +K +++  GVP+ P    
Sbjct: 78  AIHPGYGFLSENPDFAQACADAGIAFIGPRADAIAKMGSKSAAKAIMAKAGVPMLPGYHG 137

Query: 113 ---VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
               ++   +  + I  P ++K   GG   G+ +++K + +   L  +          DQ
Sbjct: 138 DDQSDQRLTEEANKIGYPLLVKAAFGGGGKGMRIVEKAEQLGAALATARREAQSAFGNDQ 197

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           LL+E+Y+     +   V  D   +V  ++           K          PA  +   +
Sbjct: 198 LLLERYLTAPRHVEVQVFADDHGNVVYLSDRDCSIQRRHQK-----VVEEAPAPGLSDAL 252

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             E+   +  A QAI   G    ++L D   R  +++E+N 
Sbjct: 253 RAEMGEASVKAAQAINYLGAGTVEYLLDEQGR-FYFMEMNT 292


>gi|304386350|ref|ZP_07368683.1| carbamoyl-phosphate synthase, large subunit [Pediococcus
           acidilactici DSM 20284]
 gi|304327707|gb|EFL94934.1| carbamoyl-phosphate synthase, large subunit [Pediococcus
           acidilactici DSM 20284]
          Length = 1057

 Score = 84.4 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 51/286 (17%), Positives = 108/286 (37%), Gaps = 33/286 (11%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI---------DVD------------RSVGLV 45
           G ++E + S   G     +L++ G++   +         D D            + V  +
Sbjct: 21  GQAAEFDYS---GTQACLSLKELGYQTVLVNSNPATIMTDTDVADKVYIEPLTRQFVSQI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   +PD     L G  G +  ++     IL+ L I    + + A   + D+ R + ++ 
Sbjct: 78  IRKERPDAILPTLGGQQGLNMAMELAESGILKELNIELLGTKLDAIDQAEDRERFRSLMK 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G PV  S +       +D       P +++P       G  ++  +  +        +
Sbjct: 138 ELGEPVPDSAIATTVAEAVDFAKQSGFPVIVRPAFTMGGTGGGIVNDETELRKIAANGLT 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   Q+LIEQ + G  E+   VM D + +   I V   + +     ++  +  +     
Sbjct: 198 LSPVTQVLIEQSIAGMKEIEFEVMRDHADNA--IVVCNMENFDPVGIHTGDSIVYAPVQT 255

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +     +E++  A L  +A+   G     F  DP+  + + +E+N 
Sbjct: 256 LSDREVQELRDAALLIIRALKIEGGCNVQFALDPVQNRYYVIEVNP 301



 Score = 76.7 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 41/271 (15%), Positives = 91/271 (33%), Gaps = 33/271 (12%)

Query: 23  ASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ---- 69
             A+   G++   +         D   S  L    L  +   NV+     +  +VQ    
Sbjct: 578 IQAIRQMGYEAIVVNNNPETVSTDFSMSDKLYFEPLTVEEVLNVIELEQPKGVIVQFGGQ 637

Query: 70  ---AILELL---EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--FTMDSQ 121
               + E L    +P   + +     + D+    Q+++                  + + 
Sbjct: 638 TAINLAEALADHGVPVLGTAVEDVNRAEDRDEFNQLITENQFRQPEGRTATTVPAAITAA 697

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
           + I  P V++P        + ++     +   +  +   +H   +LI+QY+ G E    V
Sbjct: 698 NQIGYPVVVRPSYVLGGRAMEIVHNQAELENYMHTAVQVSHQHPVLIDQYLVGTECEVDV 757

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGC 240
           + D    V    +   +           +S  V PA+ +   +  ++  +A    + + C
Sbjct: 758 VSDGHDVVIPGIMEHIERSGVHS----GDSMAVYPAQTLSTTVQNQIVEIATKLARCLRC 813

Query: 241 RGISRSDFLFDPLSRKVFWLEIN-----VQP 266
            G+    F+      +V+ +E+N       P
Sbjct: 814 VGLMNVQFIVH--DEQVYVIEVNPRASRTIP 842


>gi|254412405|ref|ZP_05026179.1| acetyl-CoA carboxylase, biotin carboxylase [Microcoleus
           chthonoplastes PCC 7420]
 gi|196180715|gb|EDX75705.1| acetyl-CoA carboxylase, biotin carboxylase [Microcoleus
           chthonoplastes PCC 7420]
          Length = 451

 Score = 84.4 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 79/220 (35%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     I    +I +      A     DK  +K+ +   GVP  P    
Sbjct: 78  AIHPGYGFLAENARFAEICADHQISFIGPSPEAMRAMGDKSTAKETMQRAGVPTVPGSEG 137

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS----IPLDLLQSSSWNHGDQ 165
            +   R  +     I  P +IK   GG   G+ ++  + +          ++ +      
Sbjct: 138 LLSSEREAITLAKDIGYPVMIKATAGGGGRGMRLVPDESAMSRLFQAAQGEADAAFGNPG 197

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           L +E+++     +   ++ D+  +V  +            K             +  ++ 
Sbjct: 198 LYLEKFIVRPRHIEFQILADSYGNVIHLGERDCSIQRRHQKLL----EEAPSPALTPELR 253

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +++   A +A ++I   G    +FL D +    +++E+N 
Sbjct: 254 EKMGTAAVMAAKSINYVGAGTVEFLLDAMGN-FYFMEMNT 292


>gi|157369662|ref|YP_001477651.1| Urea carboxylase [Serratia proteamaculans 568]
 gi|157321426|gb|ABV40523.1| Urea carboxylase [Serratia proteamaculans 568]
          Length = 1207

 Score = 84.4 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 31/214 (14%), Positives = 69/214 (32%), Gaps = 12/214 (5%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN---R 115
           +G   E        E   I +             K R++++ +   VP+ P   +     
Sbjct: 82  YGFLSESAEFADACEAAGIAFIGPTAAQIREFGLKHRARELAALAQVPMTPGTGLLDNVE 141

Query: 116 FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQLLIEQY 171
             +++   I  P ++K   GG  +G+     + ++             +       IE++
Sbjct: 142 QAVNAARQIGYPVMLKSTAGGGGIGLTRCDDETALREAYDSVKRLGEQFFRDSGAFIERF 201

Query: 172 VD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
           VD    +   + GD    V  +            K             +P    + + + 
Sbjct: 202 VDQARHVEVQIFGDGQGWVVALGERDCSLQRRNQK----VVEETPAPNLPTATRQTLHQA 257

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           A     ++  R     +F++D    + ++LE+N 
Sbjct: 258 AVALGASVNYRSAGTVEFIYDGARDEFYFLEVNT 291


>gi|104782432|ref|YP_608930.1| methylcrotonoyl-CoA carboxylase subunit alpha [Pseudomonas
           entomophila L48]
 gi|95111419|emb|CAK16139.1| putative methylcrotonoyl-CoA carboxylase alpha chain [Pseudomonas
           entomophila L48]
          Length = 654

 Score = 84.4 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 44/220 (20%), Positives = 80/220 (36%), Gaps = 19/220 (8%)

Query: 58  LHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
           +H  +G   E+      +E   + +      A      K  +K ++ + GVP+ P     
Sbjct: 82  IHPGYGFLSENAGFARAIEQAGLIFLGPPASAIDAMGSKSAAKALMEAAGVPLVPGYHGE 141

Query: 115 RFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQL 166
              +D    +   I  P ++K   GG   G+ V++ +  +   L  +           ++
Sbjct: 142 AQDLDTFRAAAERIGYPVLLKASAGGGGKGMKVVEDESQLADALASAQREAQSSFGDARM 201

Query: 167 LIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIY 224
           L+E+YV     +   V  D   +   +            K          PA  +  D+ 
Sbjct: 202 LVEKYVLKPRHVEIQVFADQHGNCLYLNERDCSIQRRHQK-----VVEEAPAPGLSPDLR 256

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K +   A  A QAIG  G    +FL D    + F++E+N 
Sbjct: 257 KAMGEAAVRAAQAIGYVGAGTVEFLLDAR-GEFFFMEMNT 295


>gi|20094347|ref|NP_614194.1| carbamoylphosphate synthase large subunit [Methanopyrus kandleri
           AV19]
 gi|22095504|sp|Q8TWX0|CARB1_METKA RecName: Full=Carbamoyl-phosphate synthase large chain, N-terminal
           section; AltName: Full=Carbamoyl-phosphate synthetase
           ammonia chain
 gi|19887409|gb|AAM02124.1| Carbamoylphosphate synthase large subunit [Methanopyrus kandleri
           AV19]
          Length = 564

 Score = 84.4 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 56/288 (19%), Positives = 110/288 (38%), Gaps = 37/288 (12%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI---------DVD------------RSVGLV 45
           G ++E + S   G     AL + G +V  +         D +            R V  +
Sbjct: 19  GQAAEFDYS---GSQACKALREEGVEVVLVNSNPATIMTDPNMADRVYLEPLDARIVAKI 75

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   +PD     L G  G +  V+     +LE  ++    + +     + D+   +  + 
Sbjct: 76  IEEERPDGILPTLGGQTGLNIAVELDEMGVLEEYDVEVLGTSVETIVRAEDRDEFRAFMK 135

Query: 102 SCGVPVCPSILVNRFTMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G PVC S  V+      +    I  P V++P       G  + + ++ +   + +   
Sbjct: 136 KIGEPVCASEAVSSVEEAKEVAEEIGYPVVVRPAYTLGGTGGGIAEDEEELKRVVERGLE 195

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
           ++  +Q+LIE+YV G  E+   VM D S + +T  ++   D            S  V PA
Sbjct: 196 YSRVNQVLIEEYVGGWAEIEYEVMRDGSGNCITVCSMENVDPMGVHT----GESIVVAPA 251

Query: 218 K-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +  + ++ ++  A     A+G  G     F     + +   +E+N 
Sbjct: 252 QTLTEEEHQMLRSAALHIIDALGVEGGCNIQFALHRETGEYRVIEVNP 299


>gi|119963622|ref|YP_947296.1| Acetyl-CoA carboxylase alpha chain [Arthrobacter aurescens TC1]
 gi|119950481|gb|ABM09392.1| Acetyl-CoA carboxylase alpha chain [Arthrobacter aurescens TC1]
          Length = 690

 Score = 84.4 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 88/223 (39%), Gaps = 16/223 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      L+   I +   GI A  +  DK+RSK  V +  VP  P I  
Sbjct: 54  AVHPGYGFLSENVEFAKALDAAGITFIGPGIGAIEVMGDKIRSKNHVMAYDVPCVPGIAK 113

Query: 112 --LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL-----QSSSWNHGD 164
             L ++  +++   +  P +IKP  GG   G+ V+++ + +   L       +S++   D
Sbjct: 114 PGLSDQELIEAAPGVGFPLLIKPSAGGGGKGMHVVERPEDMASTLATARRVAASAFG-DD 172

Query: 165 QLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLN-STHVLPAKIPLD 222
            L +E+ +     +   V+ D   +V  +   +        K      S          +
Sbjct: 173 TLFLERLIRAPRHIEVQVLADNHGNVIHLGERECSLQRRHQKVIEEAPSALFESLPDGAE 232

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLF-DPLSRKVFWLEINV 264
               +   A  A +++   G    +FL  D    + F++E+N 
Sbjct: 233 ERARIGEAACNAARSVNYSGAGTVEFLVSDEHPDEFFFMEMNT 275


>gi|83945491|ref|ZP_00957838.1| putative acyl-CoA carboxylase alpha chain protein [Oceanicaulis
           alexandrii HTCC2633]
 gi|83851067|gb|EAP88925.1| putative acyl-CoA carboxylase alpha chain protein [Oceanicaulis
           alexandrii HTCC2633]
          Length = 661

 Score = 84.4 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 41/225 (18%), Positives = 81/225 (36%), Gaps = 22/225 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+           + +      A      K R+K+++   GVPV P    
Sbjct: 77  AIHPGYGFLSENAEFARACAKAGVTFVGPSAEAIEAMGLKDRAKKLMEEAGVPVTPGYHG 136

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
           +    D        I  P +IK + GG   G+  +++  +    L     +++S    ++
Sbjct: 137 DNQEPDHLKAQADEIGYPVLIKAVAGGGGKGMRKVEESDAFLEALESCKREAASSFGDER 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           +LIE+++     +   V GD     +   V         L+          PA  +  ++
Sbjct: 197 VLIEKFISSPRHIEVQVFGD-----SRGRVVHFFERDCSLQRRHQKVIEEAPAPGMTPNV 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLS----RKVFWLEINV 264
              +   A  A QA+   G    +F+ D          +++E+N 
Sbjct: 252 RAAMCSAAVRAAQAVEYVGAGTIEFIVDGSGPLREDGFYFMEMNT 296


>gi|297672603|ref|XP_002814381.1| PREDICTED: methylcrotonoyl-CoA carboxylase subunit alpha,
           mitochondrial-like [Pongo abelii]
          Length = 722

 Score = 84.4 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 84/221 (38%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H  +G   E+     + +   I +      A      K  SK ++++ GVPV      
Sbjct: 124 AIHPGYGFLSENMEFAELCKQEGIIFIGPPPSAIRDMGIKSTSKSIMAAAGVPVVEGYHG 183

Query: 113 ---VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
               ++   +    I  P +IK ++GG   G+ +++ +Q     L  +          D 
Sbjct: 184 EDQSDQCLKEHAGRIGYPVMIKAVRGGGGKGMRIVRSEQEFQEQLESARREAKKSFNDDA 243

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           +LIE++VD    +   V GD   +   +           ++          PA  I  ++
Sbjct: 244 MLIEKFVDTPRHVEVQVFGDHHGNAVYL-----FERDCSVQRRHQKIIEEAPAPGIKPEV 298

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            K++   A  A +A+   G    +F+ D      +++E+N 
Sbjct: 299 RKKLGEAAVRAARAVNYVGAGTVEFIMDSKHN-FYFMEMNT 338


>gi|307133187|ref|YP_003885203.1| Urea carboxylase [Dickeya dadantii 3937]
 gi|306530716|gb|ADN00647.1| Urea carboxylase [Dickeya dadantii 3937]
          Length = 1197

 Score = 84.4 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 33/220 (15%), Positives = 76/220 (34%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+       E   + +    +        K +++ +     VP+ P    
Sbjct: 77  AIHPGYGFLSENAGFVTRCEQAGLVFLGPTVAQMTAFGLKHQARALAQQNDVPLLPGSGL 136

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN----HGDQL 166
           +       +    I  P ++K   GG  +G+     +  +     +           D +
Sbjct: 137 LTSLDSACEQAQRIGYPVMLKSTAGGGGIGMQRCNDEDQLADAFTRVKRLAGNNFADDGV 196

Query: 167 LIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIY 224
            +E+++     +   V GD   +V  +            +  +       PA  +   + 
Sbjct: 197 FLEKFIARARHIEVQVFGDGRGNVIALGE-----RDCSAQRRNQKVIEETPAPNLGDSVR 251

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            E+Q  A    QA+  R     ++++D  S++ ++LE+N 
Sbjct: 252 AELQATAIRLCQAVNYRSAGTVEYVYDESSKQFWFLEVNT 291


>gi|288904560|ref|YP_003429781.1| acetyl-CoA carboxylase (biotin carboxylase subunit) [Streptococcus
           gallolyticus UCN34]
 gi|306830554|ref|ZP_07463721.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus
           gallolyticus subsp. gallolyticus TX20005]
 gi|325977532|ref|YP_004287248.1| acetyl-CoA carboxylase biotin carboxylase subunit [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
 gi|288731285|emb|CBI12835.1| acetyl-CoA carboxylase (biotin carboxylase subunit) [Streptococcus
           gallolyticus UCN34]
 gi|304427272|gb|EFM30377.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus
           gallolyticus subsp. gallolyticus TX20005]
 gi|325177460|emb|CBZ47504.1| acetyl-CoA carboxylase biotin carboxylase subunit [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
          Length = 456

 Score = 84.4 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 34/221 (15%), Positives = 79/221 (35%), Gaps = 18/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  FG   E+     + E + I +            DK+ ++  + +  VPV P    
Sbjct: 77  AIHPGFGFLSENSKFATMCEEMHIKFIGPSAEIMDKMGDKINARAEMIAANVPVIPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
            +      ++    +  P ++K   GG   GI  ++  + +         ++ +      
Sbjct: 137 EVFTAEEALEVADRLGYPVMLKASAGGGGKGIRKVESAEELVPAFESASQEALAAFGNGA 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDI 223
           + IE+ +     +   ++GD     +   V         L+ ++       P   I   +
Sbjct: 197 MYIEKVIYPARHIEVQILGD-----SHDNVVHLGERDCSLQRNNQKVLEESPSVAIGKTL 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             ++   A  A +A+        +FL D  + + +++E+N 
Sbjct: 252 RAQIGDAAIRAAKAVHYENAGTIEFLLDEKTSEFYFMEMNT 292


>gi|254475908|ref|ZP_05089294.1| pyruvate carboxylase [Ruegeria sp. R11]
 gi|214030151|gb|EEB70986.1| pyruvate carboxylase [Ruegeria sp. R11]
          Length = 1147

 Score = 84.4 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 76/221 (34%), Gaps = 18/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+           I +            DK  +++V  +  VPV P+  V
Sbjct: 80  AIHPGYGLLSENPDFVDACARNGITFIGPKAETMRALGDKASARKVAIAADVPVIPATEV 139

Query: 114 NRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ----SSSWNHGDQ 165
               MD+       I  P ++K   GG   G+  I     +   +L+    + +     +
Sbjct: 140 LGNDMDAIREEAAEIGYPLMLKASWGGGGRGMRPIHGPDELEEKVLEGRREAEAAFGNGE 199

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
             +E+ +     +   ++GD   ++  +           ++  +       PA  +  + 
Sbjct: 200 GYLEKMITRARHVEVQILGDKHGEIYHLYE-----RDCSVQRRNQKVVERAPAPYLSEEQ 254

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             E+  L     Q +        +FL D    K +++E+N 
Sbjct: 255 RAELCDLGRKICQHVNYECAGTVEFLMDMNDGKFYFIEVNP 295


>gi|331091784|ref|ZP_08340616.1| acetyl-CoA carboxylase [Lachnospiraceae bacterium 2_1_46FAA]
 gi|330402683|gb|EGG82250.1| acetyl-CoA carboxylase [Lachnospiraceae bacterium 2_1_46FAA]
          Length = 421

 Score = 84.4 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 33/220 (15%), Positives = 82/220 (37%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  FG   E+     + E   I +            +K +++  +   G+PV P    
Sbjct: 77  AIHTGFGFLSENSKFAELCEKCHIIFIGPKSEVIRKMGNKSQARNTMIEAGIPVIPGSSE 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS----IPLDLLQSSSWNHGDQ 165
            IL      +    +  P +IK + GG   G+ V   ++       +   ++ +    + 
Sbjct: 137 IILDMERGKEVAVKVGYPVIIKAVLGGGGKGMRVAYTEEEFSKSFQMAQEEAKASFGDNS 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE +V+    +   ++ D   +V  +            K    +   +    +  ++ 
Sbjct: 197 MYIEHFVENPRHVEFQILADKYGNVVHLGERDCSIQENHQKLIEESPCTI----LSEELR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +++  +A  A +A+    +   +FL    + + +++E+N 
Sbjct: 253 RKMGEVAVKAAKAVQYENVGTIEFLL-ENNNQFYFMEMNT 291


>gi|2231977|gb|AAB62170.1| vancomycin resistance protein C2 [Enterococcus casseliflavus]
          Length = 117

 Score = 84.4 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 31/117 (26%), Positives = 56/117 (47%), Gaps = 8/117 (6%)

Query: 82  SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIKPLKG 135
            G+  SAL M+K    Q  ++ GV   P+IL+       + +         P   KP + 
Sbjct: 1   CGVAGSALCMNKWLLHQAAAAIGVQSAPTILLTNQANQQEQIEAFIQTHGFPVFFKPNEA 60

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192
           GSS GI  +   + I   L +  ++ +   +L+++ + G+E+ CG++G+ SL V   
Sbjct: 61  GSSKGITKVTCVEEIASALKK--AFTYCSAVLLQKNIAGVEIGCGILGNDSLTVGAC 115


>gi|119478298|ref|ZP_01618329.1| Biotin/lipoyl attachment:Carbamoyl-phosphate synthase L chain,
           ATP-binding:Carbamoyl-phosphate synthetase large chain
           [marine gamma proteobacterium HTCC2143]
 gi|119448638|gb|EAW29883.1| Biotin/lipoyl attachment:Carbamoyl-phosphate synthase L chain,
           ATP-binding:Carbamoyl-phosphate synthetase large chain
           [marine gamma proteobacterium HTCC2143]
          Length = 674

 Score = 84.4 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 82/221 (37%), Gaps = 18/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+  +    E  +I +     L+      K  ++Q+V S  +P  P    
Sbjct: 98  AIHPGYGFLAENAAMADACERNDIVFIGPTALSMKAVASKQHARQLVDSLSLPTIPGLNR 157

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
            +  +   +     I  P ++K   GG  +G+ +++    +       S  +        
Sbjct: 158 LVSYSDEFVAQCEAIGFPVLLKATAGGGGVGMRIVEHGDDLQAAFEAVSRESQQAFGDGG 217

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDI 223
           +++E+Y+ +   L   V+ D       +            K          PA++ P  I
Sbjct: 218 IIVEKYLANARHLEVQVLADHYGHCVHLHERDCSIQRRRQK-----IVEESPARLLPAGI 272

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +   A    + I  RG    +FL+ P  ++ ++LE+N 
Sbjct: 273 KQSLCDTAVAIAKHINYRGAGTVEFLYSPEHQQFYFLEMNT 313


>gi|323702041|ref|ZP_08113709.1| carbamoyl-phosphate synthase, large subunit [Desulfotomaculum
           nigrificans DSM 574]
 gi|323532923|gb|EGB22794.1| carbamoyl-phosphate synthase, large subunit [Desulfotomaculum
           nigrificans DSM 574]
          Length = 1073

 Score = 84.4 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 54/286 (18%), Positives = 107/286 (37%), Gaps = 33/286 (11%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI---------DVD------------RSVGLV 45
           G ++E + +   G     +L + G +V  +         D +              V  V
Sbjct: 21  GQAAEFDYA---GTQACRSLREEGLEVVLVNSNPATIMTDANMADKVYIEPLTPEFVTRV 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   KPD     L G  G +  +Q     IL+   +    + + A   + D+   K ++ 
Sbjct: 78  IRQEKPDGLLPTLGGQVGLNIALQLAERGILDEEGVTLLGTPLDAIRKAEDREMFKLMME 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G PV  S +V   R  ++    I  P +++P       G  + K  + +    ++   
Sbjct: 138 QIGEPVPESTIVCTVREAVEFADSIGYPVIVRPAYTLGGTGGGIAKNREQLEAVAIKGLK 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   Q+L+E+ V G  E+   VM D++ +   I V   +       ++  +        
Sbjct: 198 HSLIGQILVERSVAGWKEIEYEVMRDSADN--CITVCNMENIDPVGVHTGDSIVVAPSQT 255

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +    Y+ ++  +    +A+G  G     F  DP S K + +E+N 
Sbjct: 256 LSDREYQMLRSASLKIIRALGIEGGCNVQFALDPHSFKYYVIEVNP 301



 Score = 77.9 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 46/295 (15%), Positives = 97/295 (32%), Gaps = 37/295 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           S  A   AL + G +   I         D D              V  VLA  KP     
Sbjct: 578 SVHAV-WALREEGLEAITINNNPETVSTDFDTADRLYFEPLVVEDVLNVLAKEKPQGVIV 636

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116
              G    +  +   L    I    + + A  ++ D+ R  ++++  G+P  P       
Sbjct: 637 QFGGQTAIN--LAKPLAQAGIKIIGTSVDAIDMAEDRERFDRLLTELGIPKPPGGTAFSV 694

Query: 117 TMDS--QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
              +     I  P +++P        + ++     +   + ++        +L+++Y+ G
Sbjct: 695 EQAAVIAEKIGFPVLVRPSYVLGGRAMEIVYSQAELLAYMERAVQVTPEHPVLVDRYLAG 754

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFL 233
            E     + D    +    +   +           +S  V PA+ +      ++      
Sbjct: 755 REFEVDAVCDGETVLIPGIMEHIERAGVHS----GDSIAVYPAQTLTQAQTDQMVDYTQR 810

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
             QA+G +G+    ++      +V+ +E+N +   T     P ++   G     L
Sbjct: 811 LAQALGIKGLVNIQYVLHE--GQVYVIEVNPRSSRT----VPYLSKVTGIPMVNL 859


>gi|311109068|ref|YP_003981921.1| acetyl-CoA carboxylase biotin carboxylase subunit 1 [Achromobacter
           xylosoxidans A8]
 gi|310763757|gb|ADP19206.1| acetyl-CoA carboxylase biotin carboxylase subunit 1 [Achromobacter
           xylosoxidans A8]
          Length = 655

 Score = 84.4 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 46/219 (21%), Positives = 85/219 (38%), Gaps = 16/219 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---S 110
            +H  +G   E+      +    + +        AL  +K R+K+ +    VP  P    
Sbjct: 79  AVHPGYGFLSENADFARAVTQAGLTFVGPSAEMIALMGNKARAKEALRHADVPTVPGAQG 138

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD----QSIPLDLLQSSSWNHGDQL 166
           I  +R        I  P ++K   GG   G+ + + D    Q++PL   ++      D+L
Sbjct: 139 IADDRELSARARAIGYPVLLKAAAGGGGRGMRLAQDDTDLAQALPLARSEALGAFGSDEL 198

Query: 167 LIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
           ++E+ +     +   V+ D    V  +        S + +Y  L      PA +   +  
Sbjct: 199 ILEKAIQAARHVEIQVLCDEHGSVVHLGERD---CSLQRRYQKLVEESPSPA-VSPALRA 254

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +  +A  A QAIG  G    +FL D      +++E+N 
Sbjct: 255 RMGAVAVRACQAIGYVGAGTLEFLLDEQGN-FYFMEMNT 292


>gi|237750282|ref|ZP_04580762.1| biotin carboxylase [Helicobacter bilis ATCC 43879]
 gi|229374176|gb|EEO24567.1| biotin carboxylase [Helicobacter bilis ATCC 43879]
          Length = 470

 Score = 84.4 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 37/225 (16%), Positives = 78/225 (34%), Gaps = 14/225 (6%)

Query: 49  LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
            + D  F   +G   E+     I E   I +         +  DK ++K  +   GVPV 
Sbjct: 96  FEADAIFPG-YGFLSENQNFVEICEHHNIEFIGPSKEVMMIMSDKSKAKDCMKEAGVPVI 154

Query: 109 PS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSW 160
                 +   +  ++    I  P ++K   GG   G+ V+     +         ++ S 
Sbjct: 155 VGSDGALKSYKEALEVADKIGYPVILKAAAGGGGRGMRVVPDKGLLKNLYLAAESEALSA 214

Query: 161 NHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI 219
                + +E+++     +   ++ D   +V  I          + K             +
Sbjct: 215 FGDGTIYMEKFINKPKHIEVQILADKHGNVVHIGERDCSMQRRQQK----LIEETPAVVL 270

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             ++ K +   A  A + I   G    +FL D  ++  +++E+N 
Sbjct: 271 SDEVRKNLLDTAIKAAKHIKYVGAGTFEFLLDSNNKDFYFMEMNT 315


>gi|119356082|ref|YP_910726.1| acetyl-CoA carboxylase, biotin carboxylase [Chlorobium
           phaeobacteroides DSM 266]
 gi|119353431|gb|ABL64302.1| acetyl-CoA carboxylase, biotin carboxylase [Chlorobium
           phaeobacteroides DSM 266]
          Length = 448

 Score = 84.4 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 75/220 (34%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     +   + I +            DK  +K  + + GVPV P    
Sbjct: 77  AIHPGYGFLAENADFAEVCSSVNIKFIGPTAKMINQMGDKNTAKATMIAAGVPVVPGSQG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGDQ 165
            +      + +      P +IKP  GG   G+ V+ ++  +   L     ++        
Sbjct: 137 LVSNLAEAVKTAQNTGYPVIIKPTAGGGGKGMRVVHEENQLEKALNTARSEAEQAFGNSG 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE++++    +   ++ D   +   +            K             +   + 
Sbjct: 197 VYIEKFLENPRHVEIQILSDQHGNTIHLGERDCTVQRRHQK----LIEETPSPAVDDALR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K +   A  A  AI   G    +FL D    K F++E+N 
Sbjct: 253 KTMGDAAVAAAAAINYEGAGTIEFLLDKH-GKFFFMEMNT 291


>gi|68171179|ref|ZP_00544586.1| Biotin/lipoyl attachment:Carbamoyl-phosphate synthase L chain,
           ATP-binding:Carbamoyl-phosphate synthetase large chain,
           N-terminal:Biotin carboxylase, C-terminal [Ehrlichia
           chaffeensis str. Sapulpa]
 gi|67999410|gb|EAM86052.1| Biotin/lipoyl attachment:Carbamoyl-phosphate synthase L chain,
           ATP-binding:Carbamoyl-phosphate synthetase large chain,
           N-terminal:Biotin carboxylase, C-terminal [Ehrlichia
           chaffeensis str. Sapulpa]
          Length = 655

 Score = 84.4 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 83/220 (37%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      LE   I +      +  +  DK+ SK++  S  V + P    
Sbjct: 77  AVHPGYGFLSENADFPEKLEQYNIKFIGPSSTSIRMMADKITSKKIAESAKVNIIPGYMG 136

Query: 112 LVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
           +V+      +    I  P +IK   GG   G+ ++K  + I         +++      +
Sbjct: 137 IVDSVHEAKEIAKSIGFPVMIKATAGGGGKGMRIVKSSEEIEQAFTSATNEAAKNFRDGR 196

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+YV+    +   ++ D   ++  +   +     +  K             +  +  
Sbjct: 197 IFIEKYVELPRHIEIQIIADKHGNIVCLGERECSIQRHNQK----VIEETPSPFLDEETR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +++ +      + +G       +F+ D   ++ ++LE+N 
Sbjct: 253 QKMYQQCMNLAKKVGYYSAGTIEFIVD-QDKQFYFLEMNT 291


>gi|311068393|ref|YP_003973316.1| acetyl-CoA carboxylase biotin carboxylase subunit [Bacillus
           atrophaeus 1942]
 gi|310868910|gb|ADP32385.1| acetyl-CoA carboxylase biotin carboxylase subunit [Bacillus
           atrophaeus 1942]
          Length = 443

 Score = 84.4 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/250 (14%), Positives = 91/250 (36%), Gaps = 24/250 (9%)

Query: 28  DAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGI 84
            +    S +++D+ +       K D     +H  +G   E+ +         + +     
Sbjct: 54  KSRVNESYLNIDK-IIEAAKESKAD----AIHPGYGLLSENSIFAERCRKENLTFIGPPP 108

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL----ISPPYVIKPLKGGSSLG 140
              A    K+ +++ +    +PV P +  ++  + S  L    I  P ++K   GG  +G
Sbjct: 109 SVIAKMGSKIEARKAMEKAHIPVVPGVSESQSDVHSACLAARRIGFPVMLKASAGGGGIG 168

Query: 141 IIVIKKDQSIPLDLL----QSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVP 195
           + ++  ++ +         +++ +     + IE+ ++    +   ++ D   +       
Sbjct: 169 MQLVHSEEELIKAYEGNKKRAADFFGDGSMYIEKVIENARHIEIQILADHFGNAV----- 223

Query: 196 KSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
                   ++          P+  +  D+   +   A  A ++IG       +FL D   
Sbjct: 224 HLFERDCSVQRRHQKVIEEAPSPFVDDDLRTRIGETAVKAARSIGYTNAGTIEFLVD-QD 282

Query: 255 RKVFWLEINV 264
           +  ++LE+N 
Sbjct: 283 KNFYFLEMNT 292


>gi|78222204|ref|YP_383951.1| biotin carboxylase/acetyl-coenzyme A carboxylase carboxyl
           transferase subunit alpha [Geobacter metallireducens
           GS-15]
 gi|78193459|gb|ABB31226.1| acetyl-CoA carboxylase carboxyltransferase subunit alpha [Geobacter
           metallireducens GS-15]
          Length = 446

 Score = 84.4 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 78/220 (35%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     I E   I +      +  +  DK+ ++Q V    VP+ P    
Sbjct: 77  AIHPGYGFLSENAAFAEICENCGITFIGPSSESMRIMGDKISARQAVIKEDVPILPGTKE 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
            +      +     I  P +IK   GG   G+ ++    ++P     + +         +
Sbjct: 137 GVNDVNEAIKIAKGIGFPVIIKATAGGGGRGMKIVHSPATLPNAFATARAEAQAGFGNPE 196

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+Y +    +   +M D   +V  +            K             +  ++ 
Sbjct: 197 VYIEKYCEEPRHVEIQIMADKHGNVIHLGERDCSIQRRHQKII----EEAPCPVMTPNLR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K +   A  A +A+G   +   +FL D      +++E+N 
Sbjct: 253 KAMGDAAVRAAKAVGYDSVGTVEFLVDKNLN-FYFMEMNT 291


>gi|290960184|ref|YP_003491366.1| acetyl/propionyl CoA carboxylase subunit alpha [Streptomyces
           scabiei 87.22]
 gi|260649710|emb|CBG72825.1| acetyl/propionyl CoA carboxylase alpha subunit [Streptomyces
           scabiei 87.22]
          Length = 689

 Score = 84.4 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 82/221 (37%), Gaps = 17/221 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---- 109
            +H  +G   E+           + +      A +L  DK+R+K+ V + GVPV P    
Sbjct: 79  AVHPGYGFLAENAAFARACADAGLVFIGPPADAISLMGDKIRAKETVRAAGVPVVPGSSG 138

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
           S L +    D+ H I  P ++KP  GG   G+ +++    +  ++  +          D 
Sbjct: 139 SGLTDGELADAAHEIGMPVLLKPSAGGGGKGMRLVRDAGQLAEEIAAARREARASFGDDT 198

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           LL+E+++D    +   V+ D    V  +   +        K             +     
Sbjct: 199 LLVERWIDRPRHIEIQVLADGHGGVVHLGERECSLQRRHQKII----EEAPSVLLDEATR 254

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLS-RKVFWLEINV 264
             +   A  A ++ G  G    +F+         +++E+N 
Sbjct: 255 AAMGEAAVQAARSCGYSGAGTVEFIVPGGDPSAYYFMEMNT 295


>gi|328543662|ref|YP_004303771.1| Biotin carboxylase / acetyl-coenzyme A carboxylase carboxyl
           transferase subunit alpha [polymorphum gilvum
           SL003B-26A1]
 gi|326413406|gb|ADZ70469.1| Biotin carboxylase / acetyl-coenzyme A carboxylase carboxyl
           transferase subunit alpha [Polymorphum gilvum
           SL003B-26A1]
          Length = 448

 Score = 84.4 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 80/220 (36%), Gaps = 18/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     ILE   I +         +  DK+ +KQ     G+PV P    
Sbjct: 77  AVHPGYGFLSENARFAEILEAHGITFIGPTSEHIRIMGDKIEAKQTAKRLGIPVVPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSS----LGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
            +            I  P ++K   GG      + +     D ++     ++ +    D 
Sbjct: 137 AVTPKDDAHAIAREIGYPVLVKAAAGGGGRGMKVAMTEAHLDNALSTARSEAKAAFGDDA 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           L +E+Y+     +   V+GD   +   +        S + ++  +      PA +     
Sbjct: 197 LYMEKYLARPRHIEIQVLGDGQGNAIHLGERD---CSLQRRHQKVLEEAPSPA-LNASQR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            E+  +   A + +  RG    +FL+     + +++E+N 
Sbjct: 253 MEIGEIVADAMRKLKYRGAGTVEFLY--EDGEFYFIEMNT 290


>gi|220918312|ref|YP_002493616.1| pyruvate carboxylase [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219956166|gb|ACL66550.1| pyruvate carboxylase [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 1148

 Score = 84.4 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 79/221 (35%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+       E   I +            DK+  ++   + GVPV P    
Sbjct: 81  AIHPGYGFLSENPEFSEACERAGIAFVGPTSEMQRKLGDKVAGRKAAQAAGVPVVPGTPE 140

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
            IL +   +        P +IK   GG   G+ V +  + +   L+    ++ +      
Sbjct: 141 PILHDEEALIFAKQHGYPIIIKASAGGGGRGMRVARSQKELLEGLVSARSEARAAFGNAA 200

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDI 223
           + +E+Y++    +   V+GD   ++  +            K          P+  +    
Sbjct: 201 VFLERYIERPKHIEVQVLGDHHGELVHLFERDCSIQRRHQK-----VVEFAPSLALTEAQ 255

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +   A    +++  R     +FL DP  R  +++E+N 
Sbjct: 256 REAICGDALKIARSVRYRNAGTVEFLVDPQGRH-YFIEVNP 295


>gi|297617486|ref|YP_003702645.1| carbamoyl-phosphate synthase, large subunit [Syntrophothermus
           lipocalidus DSM 12680]
 gi|297145323|gb|ADI02080.1| carbamoyl-phosphate synthase, large subunit [Syntrophothermus
           lipocalidus DSM 12680]
          Length = 1072

 Score = 84.4 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 53/277 (19%), Positives = 103/277 (37%), Gaps = 34/277 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL+  G+++  +         D              +S+  ++A  +PD    
Sbjct: 29  SGTQACKALKKLGYEIVLVNSNPATIMTDPGIADTTYIEPLTVKSLAAIIAKERPDAVLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G  G + +     Q +L+   +      + A     D+   K+ +   G+ +  S  
Sbjct: 89  NLGGQSGLNLVSELHKQGVLDKYGVKVIGVQVDAIEKGEDRTVFKETMERLGIEMPRSQA 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                   +    +  P VI+P       G  ++   + +   + +  + +   Q+L+E+
Sbjct: 149 AYSVEEAEEIAKELGYPVVIRPAYTLGGTGGGLVYNLEELRTVVSRGLAASLVGQVLVEE 208

Query: 171 YVDG-IELTCGVMGD-ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEV 227
            V G  EL   V+ D  +  +T   +   D           +S  V P   I  ++ + +
Sbjct: 209 SVLGWEELELEVVRDAKNQKITVCFIENVDAMGVHT----GDSFCVAPMLTISPELQERL 264

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           Q  A+   +AIG  G +   F  DP + +V  +EIN 
Sbjct: 265 QEYAYRVVEAIGVIGGTNIQFAHDPKTGRVVIIEINP 301



 Score = 58.6 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/199 (13%), Positives = 72/199 (36%), Gaps = 14/199 (7%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           L    +    +      L+ D+ R ++++ S G+P+  + +       ++    I  P +
Sbjct: 646 LAAAGVRILGTTPDTIDLAEDRDRFRRMMESLGIPMPEAGMAANLEEALEVAARIGYPLM 705

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY----VDGIELTCGVMGDA 185
           ++P       G+ ++  ++ +   +  +        +LI+++    V+          DA
Sbjct: 706 VRPSYVLGGRGMEIVYDEEMLRQYVTAAVGVTPERPILIDKFLSNAVEAEADAIANGKDA 765

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
            +      +  +  +S        ++  + P  IP      ++       + +G  G+  
Sbjct: 766 FVPAVMEHIELAGIHS------GDSACVIPPVTIPERHLATIEDYTKKIARELGVVGL-- 817

Query: 246 SDFLFDPLSRKVFWLEINV 264
            +  +     KV+ LE N 
Sbjct: 818 MNIQYAIAEDKVYVLEANP 836


>gi|242790098|ref|XP_002481495.1| 3-methylcrotonyl-CoA carboxylase subunit alpha (MccA), putative
           [Talaromyces stipitatus ATCC 10500]
 gi|218718083|gb|EED17503.1| 3-methylcrotonyl-CoA carboxylase subunit alpha (MccA), putative
           [Talaromyces stipitatus ATCC 10500]
          Length = 696

 Score = 84.4 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 50/287 (17%), Positives = 98/287 (34%), Gaps = 44/287 (15%)

Query: 13  EVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNV--------------- 57
           E++L  G+         G KV+ +  +       A   P  AFN+               
Sbjct: 50  EIALRVGRTATQH----GIKVTTLYTNPDSKAQHALSSP-YAFNLGETAAYLDGDRIIEI 104

Query: 58  --------LHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP 106
                   +H  +G   E+           + +      A     DK RSK+++++ GVP
Sbjct: 105 AKREGCQGIHPGYGFLSENSEFAQKCANAGLVFIGPPWKAIEDMGDKSRSKKIMTAAGVP 164

Query: 107 VCPSILVNRFT----MDSQHLISPPYVIKPLKGGSSLGIIVIKKD----QSIPLDLLQSS 158
             P                  +  P +IK +KGG   G+ +++        +    +++ 
Sbjct: 165 CVPGYHGTNQDPLFLESEADKMQYPVLIKAVKGGGGKGMRIVRSKTEFQDQLRSAKMEAL 224

Query: 159 SWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
           +    D +L+E+Y+     +   V  D   +   +            K            
Sbjct: 225 NSFGNDHMLVEKYITTPRHIEVQVFADKHGNCVALGERDCSIQRRHQKIL----EESPAP 280

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +P  + K++   A  A  A+G  G    +F+FD  +   +++E+N 
Sbjct: 281 HLPDSVRKDLWEKARAAALAVGYEGAGTVEFIFDNDTGNFYFMEMNT 327


>gi|107102440|ref|ZP_01366358.1| hypothetical protein PaerPA_01003502 [Pseudomonas aeruginosa PACS2]
          Length = 661

 Score = 84.4 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 71/220 (32%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       E   I +      A  L   K  SK  + + GVP  P    
Sbjct: 79  AIHPGYGFLSENAEFARACEAAGIVFIGPDAEAIHLMGSKRLSKIAMLAAGVPCIPGYEG 138

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS-----SWNHGD 164
                         I  P +IK   GG   G+ ++++   +   L  +      ++   +
Sbjct: 139 AEQDDATLRREAERIGYPLMIKASAGGGGRGMRLVEEPDQLLEQLRTARSEALGAFGSAE 198

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
            +L +  +    +   V GD   ++  +            K             +  D+ 
Sbjct: 199 LILEKAVLRPRHVEIQVFGDRHGNLLYLGERDCSVQRRHQK----VIEEAPCPVLDADLR 254

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +   A  A  ++   G    +FL      + ++LE+N 
Sbjct: 255 RAMGEAAVKAAASVNYVGAGTVEFLL-GEDGRFYFLEMNT 293


>gi|2231983|gb|AAB62173.1| vancomycin resistance protein C2 [Enterococcus casseliflavus]
          Length = 122

 Score = 84.4 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 31/117 (26%), Positives = 56/117 (47%), Gaps = 8/117 (6%)

Query: 82  SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIKPLKG 135
            G+  SAL M+K    Q  ++ GV   P+IL+       + +         P   KP + 
Sbjct: 1   CGVAGSALCMNKWLLHQAAAAIGVQSAPTILLTNQANQQEQIEAFIQTHGFPVFFKPNEA 60

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192
           GSS GI  +   + I   L +  ++ +   +L+++ + G+E+ CG++G+ SL V   
Sbjct: 61  GSSKGITKVTCVEEIASALKE--AFTYCSAVLLQKNIAGVEIGCGILGNDSLTVGAC 115


>gi|89068968|ref|ZP_01156350.1| acetyl-CoA carboxylase [Oceanicola granulosus HTCC2516]
 gi|89045549|gb|EAR51613.1| acetyl-CoA carboxylase [Oceanicola granulosus HTCC2516]
          Length = 448

 Score = 84.4 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 77/220 (35%), Gaps = 18/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---- 109
            +H  +G   E+     ++E   + +         +  DK+ +K  + + GVP  P    
Sbjct: 77  AIHPGYGFLSENANFVQVVEDHGLTFIGPTAEHIRIMGDKITAKDTMKALGVPCVPGSDG 136

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
            ++      +    I  P +IK   GG   G+ V +    +         ++ +    D+
Sbjct: 137 GVVDLAAAEEIAADIGYPVIIKATAGGGGRGMKVAQSAADLKHAFQNARSEAKAAFGNDE 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+Y+     +   V GD       +A           K             I  +  
Sbjct: 197 VYIEKYLTTPRHIEIQVFGDGRGGAVHLAERDCSLQRRHQKVL----EEAPGPCISEEER 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             + ++   A   IG  G    +FL+   + + +++E+N 
Sbjct: 253 ARIGKVCADAVAKIGYSGAGTIEFLY--ENGEFYFIEMNT 290


>gi|224107361|ref|XP_002314458.1| predicted protein [Populus trichocarpa]
 gi|222863498|gb|EEF00629.1| predicted protein [Populus trichocarpa]
          Length = 1179

 Score = 84.4 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 56/281 (19%), Positives = 99/281 (35%), Gaps = 39/281 (13%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+ V  I         D D              V  V+A  +PD    
Sbjct: 105 SGTQACKALREEGYDVILINSNPATIMTDPDLADRTYVAPLTPEVVEQVVAKERPDAILP 164

Query: 57  VLHG----NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G    N         +LE   +    + + A   + D+   KQ + + G+   PS  
Sbjct: 165 TMGGQTALNLAVALAANGVLEKYNVELIGAKLNAIKKAEDRDLFKQAMENIGLKTPPSGI 224

Query: 111 -ILVNRFTMDSQHLIS-PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168
              +      S+ +I   P +I+P       G  +    +          + +   Q+L+
Sbjct: 225 GSTLEECIRISEEVIGEFPLIIRPAFTLGGSGGGIAYNKEEFEAICKAGLAASLTSQVLV 284

Query: 169 EQYVDG-IELTCGVMGD-ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYK 225
           E+ + G  E    VM D +   V   ++   D           +S  V PA+ +    Y+
Sbjct: 285 EKSLLGWKEYELEVMRDLSDNVVIICSIENIDPMGVHT----GDSITVAPAQTLTDKEYQ 340

Query: 226 EVQRLAFLAHQAIG--CRGISRSDFLFDPLSRKVFWLEINV 264
            ++  +    + IG  C G S   F  +P+  +V  +E+N 
Sbjct: 341 RLRDYSIKIIREIGVECGG-SNVQFAVNPVDGEVMVIEMNP 380



 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/195 (14%), Positives = 66/195 (33%), Gaps = 13/195 (6%)

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI--SPPYVIKPLKGGSS 138
            +   +   + D+ R   ++    +      +                P V++P      
Sbjct: 749 GTSPDSIDAAEDRERFNVIIKELNIEQPKGGIAKSEADALAIAADIGYPVVVRPSYVLGG 808

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKS 197
             + ++  D  +   L  +   +    +LI++Y+ D +E+    + D+  DV    V + 
Sbjct: 809 RAMEIVYSDDKLVKYLENAVEVDPQRPVLIDKYLSDAVEIDVDALADSHGDVVIGGVME- 867

Query: 198 DFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256
             +  +    S +S  +LP + I       +Q       +++   G+    +    +   
Sbjct: 868 --HIEQAGVHSGDSACILPTQTISSSCLTTIQLWTTKLAKSLNVCGLMNCQYAIT-MGGD 924

Query: 257 VFWLEIN-----VQP 266
           VF LE N       P
Sbjct: 925 VFLLEANPRASRTIP 939


>gi|229589504|ref|YP_002871623.1| acetyl-CoA carboxylase biotin carboxylase subunit [Pseudomonas
           fluorescens SBW25]
 gi|229361370|emb|CAY48240.1| biotin carboxylase [Pseudomonas fluorescens SBW25]
          Length = 457

 Score = 84.4 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 36/225 (16%), Positives = 84/225 (37%), Gaps = 25/225 (11%)

Query: 56  NVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
           N +H  +G   E+      +      +            DK  +++     GVPV P   
Sbjct: 79  NAVHPGYGFLSENADFAEAVLAAGAIFVGPSPETIRRMGDKAEARRTAQEAGVPVVPGSP 138

Query: 111 --ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
             +      + +   +  P +IK   GG   GI + +  + +  +      ++ +     
Sbjct: 139 GELFDVESALKAAEAVGFPLLIKASAGGGGRGIRLAENAEQLAEEFPRSQREAQAAFGNG 198

Query: 165 QLLIEQYV-DGIELTCGVMGDASLDVT----EIAVPKSDFYSYELKYSSLNSTHVLPAKI 219
            + +E+++     +   V+GD    V     E ++ +     +E   S        PA +
Sbjct: 199 AVYLERFISRARHIEVQVLGDGQHAVHLFERECSLQRRRQKIFEEAPS--------PA-L 249

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
                + +   A    +++G +G    ++L+D ++ + F++E+N 
Sbjct: 250 NPQQRETLCTSAVRLTESLGYKGAGTLEYLYDDVTGEFFFIEMNT 294


>gi|167646526|ref|YP_001684189.1| acetyl-CoA carboxylase biotin carboxylase subunit [Caulobacter sp.
           K31]
 gi|167348956|gb|ABZ71691.1| acetyl-CoA carboxylase, biotin carboxylase [Caulobacter sp. K31]
          Length = 447

 Score = 84.4 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 87/220 (39%), Gaps = 18/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---- 109
            +H  +G   E+     I+      +         +  DK+ +KQ V   G+PV P    
Sbjct: 77  AIHPGYGFLSENARFAEIVGAHGYTFIGPKPEHIRMMGDKITAKQAVKDAGIPVVPGSDG 136

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGDQ 165
            +       ++   I  P +IK   GG   G+ V +  + +   +     ++ +    D 
Sbjct: 137 GVSTEEEAFEAAEKIGFPVLIKAASGGGGRGMKVAQTREDLAEAVSTARSEARAAFGDDT 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+Y+     +   V+ D+  +V  +        S + ++  +      PA +     
Sbjct: 197 VYMERYLQKPRHIELQVIADSHGNVVHLGERD---CSLQRRHQKVLEEAPSPA-LGAADR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            ++ ++   A +AIG  G+   +FL+     + F++E+N 
Sbjct: 253 AKIGKIVVDAVKAIGYLGVGTIEFLW--EDGEFFFIEMNT 290


>gi|313683493|ref|YP_004061231.1| biotin carboxylase; acetyl-CoA carboxylase carboxyltransferase
           subunit alpha [Sulfuricurvum kujiense DSM 16994]
 gi|313156353|gb|ADR35031.1| biotin carboxylase; acetyl-CoA carboxylase carboxyltransferase
           subunit alpha [Sulfuricurvum kujiense DSM 16994]
          Length = 446

 Score = 84.4 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 41/224 (18%), Positives = 78/224 (34%), Gaps = 15/224 (6%)

Query: 50  KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109
             D  F   +G   E+     I     I +         +  DK ++K V+ + GVPV P
Sbjct: 76  GCDAVFPG-YGFLSENQHFVEICTHHGIKFIGPTPEVMVMMSDKSKAKDVMIAAGVPVVP 134

Query: 110 S----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH--- 162
                I            +  P ++K   GG   G+ V++ +  I    L + +      
Sbjct: 135 GSDGAIKDIAEAKVRAKEVGYPVILKAAAGGGGRGMRVVEDESYIENAFLAAEAEAIGAF 194

Query: 163 -GDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
               + +E+++     +   V+ D+  +V  I            K             + 
Sbjct: 195 GDGTIYMEKFIKNPRHIEVQVIADSHGNVLHIGERDCSMQRRHQK----LIEESPAVALT 250

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +I  E+   A  A + I   G    ++L D   +K +++E+N 
Sbjct: 251 PEIRAELHASAVRATKYIKYEGAGTFEYLLDA-DKKFYFMEMNT 293


>gi|145520753|ref|XP_001446232.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124413709|emb|CAK78835.1| unnamed protein product [Paramecium tetraurelia]
          Length = 665

 Score = 84.4 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 46/254 (18%), Positives = 91/254 (35%), Gaps = 26/254 (10%)

Query: 20  KACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPY 79
           +A  S L           +D ++G     + P   F   +  F ED       +  +I +
Sbjct: 57  QALQSYLRSDKI------IDVALGTKSQAIHPGFGFLSENAQFSED------CQKNDIIF 104

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT----MDSQHLISPPYVIKPLKG 135
              G  A      K  SK ++++  VPV P            +     I  P +IK + G
Sbjct: 105 VGPGADAIRKMGSKSESKIIMTNAQVPVVPGYHGENQDPNFLLQEAEKIGFPVLIKAVMG 164

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWN----HGDQLLIEQYVD-GIELTCGVMGDASLDVT 190
           G   G+ ++++       L  +          +++L+E+Y++    +   + GD   +  
Sbjct: 165 GGGKGMRIVRQKSEFLEALEGAKREALKSFKDERVLVEKYIEKPRHIEVQIFGDKHNNYV 224

Query: 191 EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
            +            K          P+ +   I  ++   A  A +A+        +F+F
Sbjct: 225 HLFERDCSIQRRHQK-----VIEEAPSALEEKIRYDIGEKAKAAARAVKYSNAGTVEFIF 279

Query: 251 DPLSRKVFWLEINV 264
           D  S K +++E+N 
Sbjct: 280 DLDSSKFYFMEMNT 293


>gi|116249741|ref|YP_765579.1| putative urea amidolyase [Rhizobium leguminosarum bv. viciae 3841]
 gi|115254389|emb|CAK04022.1| putative urea amidolyase [Rhizobium leguminosarum bv. viciae 3841]
          Length = 1179

 Score = 84.4 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 38/256 (14%), Positives = 92/256 (35%), Gaps = 30/256 (11%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      L    I +        +    K  ++++  + GVP+ P   +
Sbjct: 77  AVHPGYGFLSENIGFAERLAAEGIAFIGPRPEHLSAFGLKHTARELAKASGVPLLPGTDL 136

Query: 114 NRFTMDS---QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQL 166
            +   ++      +  P ++K   GG  +G+ +      +          + +     ++
Sbjct: 137 LQSVEEALSAAETVGYPVMLKSTAGGGGIGMQLCADAAGLTASFESVQRTARASFGDARV 196

Query: 167 LIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIY 224
            IE++V +   +   + GD    V  +           L+  +       PA  +  +  
Sbjct: 197 YIERFVAEARHVEVQIFGDGKGGVIALGE-----RDCSLQRRNQKVVEETPAPGLSAETR 251

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI---FPEMAAYA 281
             + + A    +++        +F++DP   + ++LE+N +       +    P   A  
Sbjct: 252 ARLHKAAVDLGRSVSYESAGTVEFIYDPQREEFYFLEVNTR-------LQVEHPVTEAVF 304

Query: 282 GYSFRELLLWMVEDAS 297
           G    +L+ WM+  A+
Sbjct: 305 GI---DLVEWMIRQAA 317


>gi|13475266|ref|NP_106830.1| putative carboxylase [Mesorhizobium loti MAFF303099]
 gi|14026017|dbj|BAB52616.1| putative carboxylase [Mesorhizobium loti MAFF303099]
          Length = 407

 Score = 84.4 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 40/241 (16%), Positives = 88/241 (36%), Gaps = 36/241 (14%)

Query: 67  LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL-VNRFTMDS-QHLI 124
            V  +    ++P       +     DK   +Q+++  GVPV    L  N   ++S    I
Sbjct: 86  TVAKLCRHFDLP--GPNPTSIERCCDKFTQRQLLAEAGVPVPSYRLAANAADIESYAAEI 143

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLD----LLQSSSWNHGDQLLIEQYVDGIELTCG 180
             P ++KP  G  S G+ + +    +       L     W    ++L+E++  G   +  
Sbjct: 144 GLPVILKPAVGVGSSGVRLCRNGDELAEHTTYLLGGKHIWRSSPRILVEEFAQGPYYSTE 203

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           +MGD  + +         ++ +            LPA +  +  + +  ++    +A+G 
Sbjct: 204 IMGDEVIGIYAGEFGPEPYFVFR--------EFTLPALLTDEEQERIVDVSLGCLRALGL 255

Query: 241 RGISR--SDFLFDPLSRKVFWLEINV----QPGMTPVSIFPEMAAYAGYSFR-ELLLWMV 293
            G      +F +         +E+N      PG       P++      ++  +L+   +
Sbjct: 256 -GWGPTCIEFRWTKRG--PVVIEVNPRLGGAPG-------PQLVQ---LTYGLDLVTEHI 302

Query: 294 E 294
           +
Sbjct: 303 K 303


>gi|330875102|gb|EGH09251.1| 3-methylcrotonyl-CoA carboxylase alpha subunit [Pseudomonas
           syringae pv. morsprunorum str. M302280PT]
          Length = 649

 Score = 84.0 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 78/221 (35%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      +E   + +      A      K  +K ++   GVP+ P    
Sbjct: 81  AIHPGYGFLSENADFARAIEAAGLVFLGPPASAIDAMGSKSAAKSLMEQAGVPLVPGYHG 140

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
               +D    +   I  P ++K   GG   G+ V++    +   L  +           +
Sbjct: 141 AAQDIDTFHAAAERIGYPVLLKATAGGGGKGMKVVEHAGEMAEALASAQREALSSFGDAR 200

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           +L+E+YV G   +   V  D       +            K          PA  +  ++
Sbjct: 201 MLVEKYVLGPRHVEIQVFADQQGHCLYLNERDCSIQRRHQK-----VVEEAPAPGLTPEL 255

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            K +   A  A QAIG  G    +FL D    + F++E+N 
Sbjct: 256 RKAMGEAAVKAAQAIGYVGAGTVEFLLDAR-GEFFFMEMNT 295


>gi|154685905|ref|YP_001421066.1| pyruvate carboxylase [Bacillus amyloliquefaciens FZB42]
 gi|154351756|gb|ABS73835.1| PycA [Bacillus amyloliquefaciens FZB42]
          Length = 1148

 Score = 84.0 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/221 (14%), Positives = 80/221 (36%), Gaps = 20/221 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+       E   I +         +  DK+++++     G+PV P    
Sbjct: 82  AIHPGYGFLSENIQFARRCEEEGIVFIGPTSAHLDMFGDKVKAREQAEKAGIPVIPGSDG 141

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGDQ 165
                +       +   P++IK   GG   G+ +++ +  +         ++ +    D+
Sbjct: 142 PAETLKDVEQFAKVHGFPFIIKASLGGGGRGMRIVRSESELKESFERAKSEAKAAFGNDE 201

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDI 223
           + +E+ ++    +   V+GD   +V  +           ++        V P   +  ++
Sbjct: 202 VYVEKLIENPKHIEVQVIGDKEGNVVHLYE-----RDCSVQRRHQKVIEVAPSVSLQPEL 256

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             E+   A    + +G       +FL      + +++E+N 
Sbjct: 257 RDEICEAAVALAKNVGYINAGTVEFLV--AGGEFYFIEVNP 295


>gi|297617745|ref|YP_003702904.1| carbamoyl-phosphate synthase, large subunit [Syntrophothermus
           lipocalidus DSM 12680]
 gi|297145582|gb|ADI02339.1| carbamoyl-phosphate synthase, large subunit [Syntrophothermus
           lipocalidus DSM 12680]
          Length = 1068

 Score = 84.0 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 49/291 (16%), Positives = 106/291 (36%), Gaps = 32/291 (10%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ------ 69
           AL  AG K   +         D D S  L    L  +   N++     E  +VQ      
Sbjct: 581 ALRQAGIKAIIVNNNPETVSTDFDTSDRLYFEPLVWEDVMNIIEEENPEGVIVQFGGQTA 640

Query: 70  ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQHL 123
                 L+   +    +   +   + ++ R  ++V S G+P  P   V      ++    
Sbjct: 641 INLAQQLQQAGVKILGTSFESIDRAENRDRFDELVESLGIPRPPGGSVTSIEGGLEVAER 700

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + ++  +  +   +  +   +    +L+++Y+ G EL    + 
Sbjct: 701 IGYPVLVRPSYVLGGRAMEIVYNETEMVEYMRGAVKVSREFPILVDKYLGGKELEVDAIS 760

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRG 242
           D      ++ +P    +       S +S  V PA +I  D  +++        +A+  +G
Sbjct: 761 DGQ----DVLIPGIMQHIERAGVHSGDSIAVYPAHQISQDTKEKIVDYTTKLARALAVKG 816

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F       +++ LE+N +   T     P ++   G    +L   ++
Sbjct: 817 LINIQF--VEFEGELYVLEVNPRSSRT----VPYISKVTGIPMVKLATDII 861



 Score = 74.8 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 58/288 (20%), Positives = 109/288 (37%), Gaps = 37/288 (12%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQID---------------------VDRSVGLV 45
           G ++E + +   G     AL++ G +V  ++                     V   V  +
Sbjct: 21  GQAAEFDYA---GTQACRALKEEGVQVVLVNSNPATIMTDSNIADRVYLEPLVPEVVARI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           L   +PD     L G  G +  +      ILE   IP   + + A   + D+   K+ + 
Sbjct: 78  LRKEQPDGIIANLGGQVGLNMALALHKMGILEETGIPLLGTPLEAIQKAEDRELFKKTMQ 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G PV  S +V      ++    I  P +++P       G      +  + +   +   
Sbjct: 138 EIGEPVPESTIVEDVEAAVEFAQRIGYPVIVRPAYTLGGTGGGTAYSEGELRVIATKGLK 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEI-AVPKSDFYSYELKYSSLNSTHVLPA 217
            +   Q+LIE+ V G  E+   VM DA+ +   I ++   D           +S  V PA
Sbjct: 198 MSVIHQVLIERSVAGFKEIEFEVMRDANDNCITICSMENIDPMGIHT----GDSIVVAPA 253

Query: 218 -KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +  + Y+ ++  +    +A+G  G     F  +P S + + +E+N 
Sbjct: 254 LTLNDEEYQMLRNASLKIIRALGIAGGCNIQFALNPFSSEYYVIEVNP 301


>gi|226355164|ref|YP_002784904.1| biotin carboxylase [Deinococcus deserti VCD115]
 gi|226317154|gb|ACO45150.1| putative Biotin carboxylase (Acetyl-CoA carboxylase subunit A)
           [Deinococcus deserti VCD115]
          Length = 445

 Score = 84.0 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 34/214 (15%), Positives = 74/214 (34%), Gaps = 14/214 (6%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF-- 116
           +G   E+     +     I +      +      K   +++ ++  VPV P   V     
Sbjct: 82  YGFMAENPDFAEMCREHGIVFIGPTPESMRALGSKAGGREIAAASNVPVVPGTGVLEDVD 141

Query: 117 -TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL--DLLQSSSWNH--GDQLLIEQY 171
             + +   I  P ++K   GG   G  VI+  + +       Q  +  +     +++E++
Sbjct: 142 AALLAAKQIGYPVLLKASAGGGGRGQKVIRTQEELAKGFAQAQEEARLYFSDPAVIMEKF 201

Query: 172 VDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
           ++    +   VMGD    V  I            K          P+ +P  + +E+   
Sbjct: 202 LEEFRHVEVQVMGDGKGHVIHIGERDCSIQRRNQKL-----IEEAPSTLPDTLRQEILDA 256

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
                + +   G    +F+ D      +++E+N 
Sbjct: 257 GVRLAKHVNYAGAGTLEFIVD-RDGNYYFMEMNT 289


>gi|296139042|ref|YP_003646285.1| carbamoyl-phosphate synthase L chain ATP- binding protein
           [Tsukamurella paurometabola DSM 20162]
 gi|296027176|gb|ADG77946.1| Carbamoyl-phosphate synthase L chain ATP- binding protein
           [Tsukamurella paurometabola DSM 20162]
          Length = 1811

 Score = 84.0 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 44/236 (18%), Positives = 83/236 (35%), Gaps = 23/236 (9%)

Query: 42  VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +G  L     D A+ V  G   ED         + + +      A     DK+ +K +  
Sbjct: 71  LGKALQETGADAAW-VGWGFVAEDPAFAEKCAEVGVTFVGPSPEAMRQLGDKIGAKLIAE 129

Query: 102 SCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL-- 155
             GVPV P     +       +    I  P ++K   GG   GI ++  D  +    L  
Sbjct: 130 EVGVPVAPWSRGPVETLEEAKEKAKDIGYPLMLKATAGGGGRGIRMVASDADLEEAYLRT 189

Query: 156 --QSSSWNHGDQLLIEQYVDG-IELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSS 208
             ++        + +E+ V G   +   V+ D     +L V + +V +          + 
Sbjct: 190 REEAERAFGSGVVFLERLVTGARHVEVQVISDGETAWALGVRDCSVQRR---------NQ 240

Query: 209 LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
                     +  +  + ++  A      +G RG +  +FL+ P    + +LE+N 
Sbjct: 241 KVIEESASPVLGPEQVQRLKESAERLAIKVGYRGAATVEFLYHPGDDLLAFLEVNT 296


>gi|134100770|ref|YP_001106431.1| acetyl/propionyl-CoA carboxylase alpha subunit [Saccharopolyspora
           erythraea NRRL 2338]
 gi|291008306|ref|ZP_06566279.1| acetyl/propionyl-CoA carboxylase alpha subunit [Saccharopolyspora
           erythraea NRRL 2338]
 gi|133913393|emb|CAM03506.1| probable acetyl/propionyl-CoA carboxylase alpha subunit
           [Saccharopolyspora erythraea NRRL 2338]
          Length = 1827

 Score = 84.0 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 43/214 (20%), Positives = 78/214 (36%), Gaps = 13/214 (6%)

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G   ED     + E + + +      A     DK+ +K +    GVPV P        +D
Sbjct: 88  GFVAEDPAFAELCEKIGVTFIGPSAEAMRRLGDKIGAKLLAEEVGVPVAPWSRGEVSDLD 147

Query: 120 ----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQLLIEQY 171
               +   I  P ++K   GG   GI VI  +Q +         ++        + +E+ 
Sbjct: 148 GARRAADEIGYPLMLKATAGGGGRGIRVINSEQELTEAYERTRMEAERAFGNGAVFLERL 207

Query: 172 VDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
           V G   +   V+ D       + V          K    +++ V    +  +  +E++  
Sbjct: 208 VTGARHVEVQVIADGQGTAWALGVRDCSVQRRNQKIIEESASPV----LTAEQSRELKAA 263

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           A    +A+  RG    +FL+ P      +LE+N 
Sbjct: 264 AERLARAVEYRGAGTVEFLYHPGEELFAFLEVNT 297


>gi|116328575|ref|YP_798295.1| Acetyl/propionyl-CoA carboxylase, alpha subunit [Leptospira
           borgpetersenii serovar Hardjo-bovis L550]
 gi|116121319|gb|ABJ79362.1| Acetyl/propionyl-CoA carboxylase, alpha subunit [Leptospira
           borgpetersenii serovar Hardjo-bovis L550]
          Length = 483

 Score = 84.0 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 79/220 (35%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E       L+   + +      +  L  DK+ S+  + + GVPV P    
Sbjct: 77  AVHPGYGFLSEKSEFAKALQKENVLFLGPTPESMELMGDKINSRIKMEASGVPVVPGYNG 136

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQS----IPLDLLQSSSWNHGDQ 165
                +        I  P +IK   GG   G+  + K +     +     ++        
Sbjct: 137 QDQNPNVLQREAEKIGYPLMIKATAGGGGKGMKRVYKPEEFLTSLESAQREAQKAFGDGT 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+Y++    +   V GD   +V  +   +        K             +P ++ 
Sbjct: 197 VFLEKYIEMPRHVEVQVFGDKHGNVMHLFERECSIQRRHQK----VIEESPAPNLPAELR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            E+ ++A  A ++I   G    +F+      K ++LE+N 
Sbjct: 253 DEICQVAVKAARSIDYVGAGTVEFIL-GKDGKFYFLEMNT 291


>gi|114798573|ref|YP_760945.1| acetyl-CoA carboxylase biotin carboxylase [Hyphomonas neptunium
           ATCC 15444]
 gi|114738747|gb|ABI76872.1| acetyl-CoA carboxylase, biotin carboxylase [Hyphomonas neptunium
           ATCC 15444]
          Length = 457

 Score = 84.0 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 80/221 (36%), Gaps = 20/221 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     ++E   I +         +  DK+ +KQ +   GVP  P    
Sbjct: 82  AIHPGYGFLSENAQFAEMVEAHGIAFIGPTAEHIRVMGDKIAAKQAMIEAGVPCVPGSDG 141

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS-----SSWNHGD 164
            +        +   I  P ++K   GG   G+ +   +  +   +  +     +++   D
Sbjct: 142 AVESIADAKKAAKKIGFPILVKASAGGGGRGMKLAMTEADLENAIKTAKTESKAAFG-DD 200

Query: 165 QLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            + +E+Y+ G   +   V+ D   +V  +            K             +    
Sbjct: 201 AVYLEKYLQGPRHIEIQVIADTHGNVAHLWERDCSLQRRNQKVF----EEAPSPALNQVQ 256

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +E+  +   A Q +G RG    +FL+     + +++E+N 
Sbjct: 257 REEIGGIVARAMQKLGYRGAGTIEFLY--EDGRFYFIEMNT 295


>gi|160878679|ref|YP_001557647.1| acetyl-CoA carboxylase, biotin carboxylase [Clostridium
           phytofermentans ISDg]
 gi|160427345|gb|ABX40908.1| acetyl-CoA carboxylase, biotin carboxylase [Clostridium
           phytofermentans ISDg]
          Length = 448

 Score = 84.0 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 75/220 (34%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  FG   E+     + E   I +            DK  ++  +    VPV P    
Sbjct: 77  AIHPGFGFLSENSKFAQLCEKCNIAFIGPNKDVIDRMGDKACARNTMMEAKVPVVPGTKE 136

Query: 114 NRFTMDSQHLI----SPPYVIKPLKGGSSLGIIVIKKDQS----IPLDLLQSSSWNHGDQ 165
               +     +      P +IK   GG   G+ ++  ++           ++ +    D 
Sbjct: 137 PLHELKRAKALANEIGYPIMIKASAGGGGRGMRIVHSEEEFDNLFETARQEAKNAFGDDT 196

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+Y+ G   +   ++ D   +V  +            K           A +   + 
Sbjct: 197 MYLERYISGARHIEFQILADQFGNVVHLGERDCSVQRRHQKMI----EEAPSAALNESLR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           KE+  +A +A +A         +FL D   R  +++E+N 
Sbjct: 253 KEMGEVAVMAAKAANYTNAGTIEFLLDDKGR-YYFIEMNT 291


>gi|330808048|ref|YP_004352510.1| Urea carboxylase (Allophanate hydrolase subunit 2) [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
 gi|327376156|gb|AEA67506.1| Urea carboxylase (Allophanate hydrolase subunit 2) [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 1209

 Score = 84.0 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 43/256 (16%), Positives = 85/256 (33%), Gaps = 30/256 (11%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV---CPS 110
            +H  +G   E+       E   I +         +   K  ++ +    GVP+      
Sbjct: 77  AIHPGYGFLSENAAFAQACEAAGIAFIGPTPEQLRVFGLKHTARDLARRHGVPLLEGTEL 136

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQL 166
           +      + +   +  P ++K   GG  +G+ V +    +                   +
Sbjct: 137 LDSLDAALLAGTQLGYPVMLKSTAGGGGIGMRVCRSAADLSESFETVKRLGQNNFSDAGV 196

Query: 167 LIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
            IE+Y++    L   V GD    V  + V          K             +P  +  
Sbjct: 197 FIEKYIERARHLEVQVFGDGLGQVIALGVRDCSVQRRNQKVL----EETPAPNLPEGMAD 252

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285
           E+   A    QA+  R     +F+FD  + + ++LE+N             +    G + 
Sbjct: 253 ELCAAAIQLAQAVNYRSAGTVEFVFDSDAGRFYFLEVNT-----------RLQVEHGVTE 301

Query: 286 R----ELLLWMVEDAS 297
           +    +L+ WMV+ A+
Sbjct: 302 QVWGVDLVRWMVQLAA 317


>gi|328542024|ref|YP_004302133.1| pyruvate carboxylase protein [polymorphum gilvum SL003B-26A1]
 gi|326411774|gb|ADZ68837.1| Probable pyruvate carboxylase protein [Polymorphum gilvum
           SL003B-26A1]
          Length = 1147

 Score = 84.0 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 82/221 (37%), Gaps = 18/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E        E   I +            +K+ ++ +    GVPV P+   
Sbjct: 79  AIHPGYGFLSESPEFAEACEREGIVFIGPRPDTMRRLGNKVAARNLAIEAGVPVMPATEP 138

Query: 114 NRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
               +         I  P ++K   GG   G+ VI  ++S+  +++ +          D+
Sbjct: 139 LPDALPEIAAQAAAIGYPLMLKASWGGGGRGMRVIPDEKSLLKEVVAAKREARAAFGKDE 198

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           + +E+ V+    +   ++GD   ++  +            K          PA  +  + 
Sbjct: 199 IYLEKLVERARHVEVQILGDGHGNLVHLYERDCSIQRRHQK-----VVERAPAPYLVPED 253

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +++   A    +++  RG    +FL D  +  ++++E+N 
Sbjct: 254 RRKLAGYALAICESVSYRGAGTVEFLMDADTGAIYFIEVNP 294


>gi|288961257|ref|YP_003451596.1| urea carboxylase [Azospirillum sp. B510]
 gi|288913565|dbj|BAI75052.1| urea carboxylase [Azospirillum sp. B510]
          Length = 1228

 Score = 84.0 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 39/257 (15%), Positives = 90/257 (35%), Gaps = 32/257 (12%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+           I +             K  ++ +    GVP+ P    
Sbjct: 77  AIHPGYGFLSENPGFAEACAAAGITFIGPTPEQMRAFGLKHSARALAERSGVPLSPGSGL 136

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQL 166
           +            I  P +IK   GG  +G+ + ++ +++       S  +        +
Sbjct: 137 LTDAAHARAEAARIGYPVMIKSTAGGGGIGMQLCREPETLEPMFEAVSRLSRNNFKDGGV 196

Query: 167 LIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIY 224
            +E++++    +   + GD    V  +            +  +       PA  I  D+ 
Sbjct: 197 FLEKFIERARHIEVQIFGDGQGGVVALGE-----RDCSAQRRNQKVIEETPAPGIGDDLR 251

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAY 280
           +++   A    +A+  +     +F++D  + + ++LE+N +     G+T           
Sbjct: 252 RKLFDAAERLGRAVNYQSAGTVEFVYDEAAGEAYFLEVNTRLQVEHGVTE--------EV 303

Query: 281 AGYSFRELLLWMVEDAS 297
            G    +L+ WM+  A+
Sbjct: 304 TGI---DLVEWMIRQAA 317


>gi|78187802|ref|YP_375845.1| Acetyl-CoA carboxylase, biotin carboxylase [Chlorobium luteolum DSM
           273]
 gi|78167704|gb|ABB24802.1| Acetyl-CoA carboxylase, biotin carboxylase [Chlorobium luteolum DSM
           273]
          Length = 453

 Score = 84.0 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 74/220 (33%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     +     I +            DK  +K  + +  VPV P    
Sbjct: 83  AIHPGYGFLAENADFSDVCASAGIKFIGPSARMINQMGDKNTAKSTMIAANVPVVPGSPG 142

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGDQ 165
            +   +  +        P +IKP  GG   G+ V+ ++  +   L     ++        
Sbjct: 143 LVTDLKEAIAVAKKTGYPVIIKPTAGGGGKGMRVVHEESQLEKALNTARSEAEQAFGNSG 202

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE++++    +   ++ D   +   +            K             +   + 
Sbjct: 203 VYIEKFLENPRHVEIQILSDQHGNTLHLGERDCTVQRRHQK----LIEETPSPVVDEALR 258

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K +   A  A +AI   G    +FL D   +  +++E+N 
Sbjct: 259 KRMGDAAVAAAKAINYEGAGTIEFLLDRH-KDFYFMEMNT 297


>gi|238061489|ref|ZP_04606198.1| carbamoyl-phosphate synthase subunit L, ATP-binding [Micromonospora
           sp. ATCC 39149]
 gi|237883300|gb|EEP72128.1| carbamoyl-phosphate synthase subunit L, ATP-binding [Micromonospora
           sp. ATCC 39149]
          Length = 690

 Score = 84.0 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 44/216 (20%), Positives = 84/216 (38%), Gaps = 20/216 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+    A +    + +      A A   DKM +K +++  GVP+ P+   
Sbjct: 106 AVHPGYGFLAENADFAAAVTDAGLTWVGPPAKAIAAMGDKMAAKALLADAGVPMLPTWT- 164

Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQLLIE 169
                D+  + + P ++K   GG   G+ ++     +   +  +            + +E
Sbjct: 165 -----DTAEITAFPVLVKASTGGGGRGMRIVSDPAGLAEAVASARREAAAAFGDGTVFVE 219

Query: 170 QYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           +YV+ G  +   V GD+   V  +            K          PA +P  + + + 
Sbjct: 220 RYVERGRHVEVQVFGDSHGTVLALGERDCSIQRRHQK-----IVEEAPAVLPDGVRQRLH 274

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             A  A +A+G  G    +FL  P   + F+LE+N 
Sbjct: 275 AAAVAAARAVGYVGAGTVEFLLAP-DGEFFFLEMNT 309


>gi|302540569|ref|ZP_07292911.1| LigA protein [Streptomyces hygroscopicus ATCC 53653]
 gi|302458187|gb|EFL21280.1| LigA protein [Streptomyces himastatinicus ATCC 53653]
          Length = 480

 Score = 84.0 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 39/197 (19%), Positives = 75/197 (38%), Gaps = 17/197 (8%)

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-LVNRFTMDSQHLISPPYVIK 131
           ELL +P         A   DK   ++ +++ G+ V   + L +    +    +  P V+K
Sbjct: 157 ELLGLPGIGRDAALGA--QDKRVMRERLAAAGLNVPRFVGLKDPSAWEEAAHLDFPVVVK 214

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIEQYVDGIELTCGVMG-DA 185
           P  G SSLG+   ++   +   + +              L++E+Y+DG E     +    
Sbjct: 215 PAHGFSSLGVTKAERPDELKAVVEEVWQICRGKLGEARGLIVEEYLDGPEFAVESLAHRG 274

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG-CRGIS 244
            + V  I    +    Y        S +  PA +P  +   ++     AH A+G   G +
Sbjct: 275 EVTVCGIGYKGAPEGPY-----FEESVYRAPAVLPEPVRDAIRHEVTAAHAALGIADGPT 329

Query: 245 RSDFLFDPLSRKVFWLE 261
            ++        + + LE
Sbjct: 330 HTELRLR--GDRPYLLE 344


>gi|192360305|ref|YP_001981735.1| urea amidolyase [Cellvibrio japonicus Ueda107]
 gi|190686470|gb|ACE84148.1| urea amidolyase [Cellvibrio japonicus Ueda107]
          Length = 1212

 Score = 84.0 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 42/282 (14%), Positives = 88/282 (31%), Gaps = 40/282 (14%)

Query: 19  GKACASALEDAGFKVSQI--DVDRSVGLVLA---------------HLKPDLAFNVL--- 58
               A  L+  G +   +  D DR+   V A               +LK DL        
Sbjct: 14  AVRIAKTLKKMGIESVAVYSDADRNSAHVTACDKAICLGGNTAAESYLKVDLILAAAKET 73

Query: 59  --------HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
                   +G   E+       E   I +             K  S+++    GVP+ P 
Sbjct: 74  GAQAIIPGYGFLSENANFCEKCEAEGIAFCGPTPEQIRQFGLKHTSRELAEQAGVPLTPG 133

Query: 111 ILVNRFTMDSQHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS----WNHG 163
             +     ++ H    +  P ++K   GG  +G+     +  +             +   
Sbjct: 134 TGLLGSVEEATHAAATLGYPVMLKSTAGGGGIGLTRCNSEAELVNAYESVKRLGQNFFSD 193

Query: 164 DQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD 222
             + +E++VD    +   + GD   +V  +            K             +P  
Sbjct: 194 SGVFLERFVDNARHVEVQIFGDGKGNVLALGERDCSLQRRNQK----VVEETPAPNLPAA 249

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +++   +    + +  R     ++++DP   + ++LE+N 
Sbjct: 250 TREQLLAASVSLGKMVNYRSAGTIEYIYDPARDEFYFLEVNT 291


>gi|237753279|ref|ZP_04583759.1| biotin carboxylase [Helicobacter winghamensis ATCC BAA-430]
 gi|229375546|gb|EEO25637.1| biotin carboxylase [Helicobacter winghamensis ATCC BAA-430]
          Length = 456

 Score = 84.0 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 44/226 (19%), Positives = 86/226 (38%), Gaps = 17/226 (7%)

Query: 49  LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
            K D  F   +G   E+     I     I +         L  DK ++K+V+   GVPV 
Sbjct: 78  FKVDAIFPG-YGFLSENQNFVEICNHHGIEFIGPTPDVMVLMSDKSKAKEVMKKAGVPVV 136

Query: 109 PS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH-- 162
           P     +      +     I  P ++K   GG   G+ +++ ++++    L + S     
Sbjct: 137 PGSDGAVESKEQAIKLAKEIGYPVILKAAAGGGGRGMRIVESEENMFNAYLAAESEAISA 196

Query: 163 --GDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK- 218
                + +E+++D    +   V+ D   +V  I           L+          PA  
Sbjct: 197 FGDGTIYMEKFIDKPKHIEVQVIADKCGNVLHIGE-----RDCSLQRRHQKLIEESPAPT 251

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +     +++ + A  A +AI   G    +FL D  ++  +++E+N 
Sbjct: 252 LEPKTREKLLQTAITATKAIKYVGAGTYEFLLD-SNQNFYFMEMNT 296


>gi|52082521|ref|YP_081312.1| hypothetical protein BL00235 [Bacillus licheniformis ATCC 14580]
 gi|52787917|ref|YP_093746.1| hypothetical protein BLi04240 [Bacillus licheniformis ATCC 14580]
 gi|52005732|gb|AAU25674.1| conserved hypothetical protein [Bacillus licheniformis ATCC 14580]
 gi|52350419|gb|AAU43053.1| conserved hypothetical protein [Bacillus licheniformis ATCC 14580]
          Length = 425

 Score = 84.0 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 41/233 (17%), Positives = 92/233 (39%), Gaps = 26/233 (11%)

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKP 132
           E L +P             +K +++ ++   G+        +         +S P V+KP
Sbjct: 95  EALNLP--GLPFTTMENCRNKNKTRSILQQNGLNTPVFHEFHTLADLENRKLSYPLVVKP 152

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSS--------WNHGDQ-LLIEQYVDGIEL---TCG 180
           + G SS G++ +   + +   + +  +        + HG   ++ EQ++DG E    T  
Sbjct: 153 VNGFSSQGVVRVDDRKELEEAVRKVEAVNQRDLNRFVHGKTGIVAEQFIDGPEFAIETLS 212

Query: 181 VMGD-ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
           + G+   L +      K  F+            ++ PA++  +    + +    A  A+G
Sbjct: 213 IQGNVHVLSIGYKGNSKGPFF--------EEGVYIAPAQLKEETRLAIVKEVTGAVSALG 264

Query: 240 C-RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             +G + ++   D      + +E+  + G + VS +  +    G +F +L+L 
Sbjct: 265 IHQGPAHTELRLDK-DGTPYVIEVGARIGGSGVSHY-IVKESTGINFMQLVLQ 315


>gi|46138797|ref|XP_391089.1| hypothetical protein FG10913.1 [Gibberella zeae PH-1]
          Length = 1834

 Score = 84.0 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 48/251 (19%), Positives = 97/251 (38%), Gaps = 17/251 (6%)

Query: 25  ALEDAGFKVSQIDVDRSVGLVLA-HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
           AL+  G  VS   ++    L LA H   D      +G   E+    A +E   + +    
Sbjct: 689 ALKLRGASVSDTYLNMDQILELAVHSSVDAIIPG-YGFLSENADFAAAVEDRGMTWVGPT 747

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVN----RFTMDSQHLISPPYVIKPLKGGSSL 139
               A    K R++ +    GVPV P   +     +  +   + I  P ++K   GG  +
Sbjct: 748 PQQMAELGLKHRARSIAVKVGVPVIPGCEMLLESLKEAILESNKIGFPLMLKSTAGGGGI 807

Query: 140 GIIVIKKDQSIPLDLL----QSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAV 194
           G+   K  + +         Q+ +      + +E+Y++    +   ++GD +       V
Sbjct: 808 GLSYCKDVEGLSATFEVVQRQAVANFGDGGVFLERYIERARHVEIQILGDGTG-----RV 862

Query: 195 PKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
             +      L+          PA  IP  +  E++  A     ++  R +   +F++D  
Sbjct: 863 VSAGERDCSLQRRHQKIVEESPAGMIPKSVRTEMKEAALRLASSVRYRNVGTVEFIYDLD 922

Query: 254 SRKVFWLEINV 264
           +++ ++LE+N 
Sbjct: 923 TKEYYFLEVNT 933


>gi|52080515|ref|YP_079306.1| acetyl-CoA carboxylase biotin carboxylase subunit [Bacillus
           licheniformis ATCC 14580]
 gi|52785894|ref|YP_091723.1| acetyl-CoA carboxylase biotin carboxylase subunit [Bacillus
           licheniformis ATCC 14580]
 gi|319645523|ref|ZP_07999755.1| YngH protein [Bacillus sp. BT1B_CT2]
 gi|52003726|gb|AAU23668.1| Carbamoyl-phosphate synthase L chain, ATP binding [Bacillus
           licheniformis ATCC 14580]
 gi|52348396|gb|AAU41030.1| YngH [Bacillus licheniformis ATCC 14580]
 gi|317392409|gb|EFV73204.1| YngH protein [Bacillus sp. BT1B_CT2]
          Length = 446

 Score = 84.0 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 79/221 (35%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+           I +        A    K+ ++Q +   GVPV P +  
Sbjct: 77  AIHPGYGLLSENSRFAERCLKENITFIGPPPDVIAKMGSKIEARQAMEQAGVPVVPGVTK 136

Query: 114 NRFTMDSQHLI----SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
           +   ++    +      P ++K   GG  +G+ +I+ +  +         +++ +     
Sbjct: 137 SLSGLNEARALAESIGYPVMLKASFGGGGIGMQLIRNESELEKAYEGNQKRAADFFGDGA 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDI 223
           + IE+Y++    +   ++ D   +   +          + K          PA +    +
Sbjct: 197 MYIEKYIEQARHIEIQILTDKYENAVYLWERDCSIQRRQQK-----IIEEAPAPLFDETM 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             ++   A  A  +IG       +FL D      ++LE+N 
Sbjct: 252 RTKLGEAAVKAALSIGYVNAGTIEFLVDK-ENHFYFLEMNT 291


>gi|163781911|ref|ZP_02176911.1| pyruvate carboxylase n-terminal domain [Hydrogenivirga sp.
           128-5-R1-1]
 gi|159883131|gb|EDP76635.1| pyruvate carboxylase n-terminal domain [Hydrogenivirga sp.
           128-5-R1-1]
          Length = 472

 Score = 84.0 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 47/250 (18%), Positives = 91/250 (36%), Gaps = 23/250 (9%)

Query: 32  KVSQIDVDRSVGLVLAHLKPDLAF----NVLHGNFG---EDGLVQAILELLEIPYTHSGI 84
           +   I VD     +      DLA     + +H  +G   E+     + E   I +     
Sbjct: 47  EAYMIGVDPLDTYLNKQRIIDLALEVGADAIHPGYGFLAENAEFAKMCEEAGITFVGPSW 106

Query: 85  LASALSMDKMRSKQVVSSCGVPVCP---SILVNRFTMDS-QHLISPPYVIKPLKGGSSLG 140
               L  DK RSK+V+   GVPV P    +L +     +    I  P ++K   GG   G
Sbjct: 107 QVIELMGDKARSKEVMKKAGVPVVPGSDGVLKDVEEAKALAKEIGYPVLLKATAGGGGRG 166

Query: 141 IIVIKKDQSI----PLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVP 195
           I + + ++ +         ++        LL+E++++    +   V+GD   +V  +   
Sbjct: 167 IRICRNEEELVKNYESAYNEAQKAFGCGDLLLEKFIENPRHIEFQVLGDKHGNVIHLGER 226

Query: 196 KSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
                    K        + P+  +  +       +   A + IG       +F+ D   
Sbjct: 227 DCSIQRRNQKL-----VEIAPSLLLTPEKRAHYGEIVAKAAKEIGYYNAGTMEFIADEEG 281

Query: 255 RKVFWLEINV 264
             ++++E+N 
Sbjct: 282 N-LYFIEMNT 290


>gi|302878017|ref|YP_003846581.1| urea carboxylase [Gallionella capsiferriformans ES-2]
 gi|302580806|gb|ADL54817.1| urea carboxylase [Gallionella capsiferriformans ES-2]
          Length = 1208

 Score = 84.0 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 32/220 (14%), Positives = 77/220 (35%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--I 111
            +H  +G   E+           + +             K  ++++    GVP+ P   +
Sbjct: 77  AIHPGYGFLSENASFAEQCAEAGVVFIGPTPDQMRRFGLKHTARELAQQNGVPLLPGSGL 136

Query: 112 LVNRFTMDSQHL-ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGDQL 166
           L++     ++   I  P +IK   GG  +G+ +      +          + +      +
Sbjct: 137 LIDAGHAHAEAARIGYPVMIKSTAGGGGIGMRLCWSSDELNEAFQSVERLARANFKDAGI 196

Query: 167 LIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIY 224
            +E+YV+    +   + GD    V              ++  +       PA  +  ++ 
Sbjct: 197 YLEKYVEHARHIEVQLFGDGRGCVI-----DLGERDCSVQRRNQKVIEETPAPNLTPEVR 251

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +   A     A+  +     +F+FD  + + ++LE+N 
Sbjct: 252 QHLLATAVRLGVAVQYQSAGTVEFVFDANNGEFYFLEVNT 291


>gi|257057336|ref|YP_003135168.1| acetyl/propionyl-CoA carboxylase, alpha subunit [Saccharomonospora
           viridis DSM 43017]
 gi|256587208|gb|ACU98341.1| acetyl/propionyl-CoA carboxylase, alpha subunit [Saccharomonospora
           viridis DSM 43017]
          Length = 467

 Score = 84.0 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 34/219 (15%), Positives = 74/219 (33%), Gaps = 18/219 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   ED     I     + +        A   DK +++ +++  GVP+ P  L 
Sbjct: 86  AVHPGYGFLSEDPDFAEICADNGLVFIGPRPELMARLGDKAQARSLLAEAGVPLLPGSLG 145

Query: 114 N----RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
                   +     I  P +IK + GG   G+ ++     +      + +         +
Sbjct: 146 TVDNAAEAVALASEIGFPLIIKAVAGGGGRGMTIVWNYDELVPAYHATRATAQTTFGDGR 205

Query: 166 LLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+Y      +   ++ D    V  +            K            ++   + 
Sbjct: 206 VYLERYCPQARHVEVQILADEHGKVLHLGERDCSVQRRHQK----LIEETPAPRLSQAVR 261

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
             +   A    +A+G  G    +FL D    + +++E+N
Sbjct: 262 NRLTEAAVQGAEAVGYTGAGTFEFLVD--GDECYFMEVN 298


>gi|125623494|ref|YP_001031977.1| pyruvate carboxylase [Lactococcus lactis subsp. cremoris MG1363]
 gi|6455967|gb|AAF09095.1|AF068759_1 pyruvate carboxylase [Lactococcus lactis subsp. lactis]
 gi|124492302|emb|CAL97236.1| pyruvate carboxylase [Lactococcus lactis subsp. cremoris MG1363]
 gi|300070246|gb|ADJ59646.1| pyruvate carboxylase [Lactococcus lactis subsp. cremoris NZ9000]
          Length = 1137

 Score = 84.0 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 47/278 (16%), Positives = 101/278 (36%), Gaps = 30/278 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVS--QIDVDRSVGLVLAHLKPDLAFNVL 58
           +AV     + E E S+   KA  S L   G K     +D+D  + + L     D     +
Sbjct: 28  VAV----YAREDEYSVHRFKADESYLIGQGKKPIDAYLDIDDIIRVAL-ESGAD----AI 78

Query: 59  HGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC---GVPVCPSIL 112
           H  +G   E+      +    + +    +    +  DK+++K         G+P     +
Sbjct: 79  HPGYGLLSENLEFATKVRAAGLVFVGPELHHLDIFGDKIKAKAAADEAQVPGIPGTNGAV 138

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG----DQLLI 168
                ++       P +IK   GG   G+ V + D  +     ++ S   G     ++ +
Sbjct: 139 DIDGALEFAQTYGYPVMIKAALGGGGRGMRVARNDAEMHDGYARAKSEAIGAFGSGEIYV 198

Query: 169 EQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKE 226
           E+Y++    +   ++GD+  ++              ++  +     + PA  +  +   E
Sbjct: 199 EKYIENPKHIEVQILGDSHGNIV-----HLHERDCSVQRRNQKVIEIAPAVGLSPEFRNE 253

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +   A    + +G       +FL      K +++E+N 
Sbjct: 254 ICEAAVKLCKNVGYVNAGTVEFLV--KDDKFYFIEVNP 289


>gi|46409051|dbj|BAD16654.1| urea carboxylase homologue [Oleomonas sagaranensis]
          Length = 1171

 Score = 84.0 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 32/220 (14%), Positives = 71/220 (32%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      L    I +             K  ++ +  + GVP+ P   +
Sbjct: 77  AVHPGYGFLSENAGFAEALAAKGIRFIGPRPEHLRDFGLKHTARALAEAAGVPLLPGTGI 136

Query: 114 NRFTMDSQHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQL 166
                ++      I  P ++K   GG  +G+ +      +                  ++
Sbjct: 137 LLSAEEALAAAHEIGYPVMLKSTAGGGGIGMSLCHDASELQARFEAVQRMASSSFGDARV 196

Query: 167 LIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIY 224
            IE++V     +   + GD   +V  +           L+  +       PA  +  ++ 
Sbjct: 197 YIERFVSTARHVEVQIFGDGKGNVVALGE-----RDCSLQRRNQKVVEETPAPGLSPELR 251

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +   A    +A+        +F++D       +LE+N 
Sbjct: 252 ARLHAAAVALGKAVAYESAGTVEFIYDVARGDFSFLEVNT 291


>gi|86197052|gb|EAQ71690.1| hypothetical protein MGCH7_ch7g1097 [Magnaporthe oryzae 70-15]
          Length = 729

 Score = 84.0 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 41/233 (17%), Positives = 79/233 (33%), Gaps = 30/233 (12%)

Query: 35  QIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKM 94
            +D DR   L    L P +A +  +G   E+     +     + +      A A   DK 
Sbjct: 109 YLDGDRISRLAADKLGPGVALHPGYGFLSENAAFARLCADRGVNFVGPPASAMADMGDKA 168

Query: 95  RSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154
           RSK ++S+ GVP  P                         G       + +K   I    
Sbjct: 169 RSKHIMSAAGVPCVPGY----------------------HGEEQSAAFLAEKAAEIDARA 206

Query: 155 LQSSSWNHGDQLL-IEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212
              +S+    +++ +E+Y+     +   V  D       +            K       
Sbjct: 207 EARASFGPDGEIMLVEKYITRPRHVEVQVFADRHGGCVALGERDCSIQRRHQK-----VI 261

Query: 213 HVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              PA  +  ++ +++   A  A  A+G  G    +F+ D  + + +++E+N 
Sbjct: 262 EESPAPGLSEELRQDLWAKARTAALAVGYVGAGTVEFILDRDTDRFYFMEMNT 314


>gi|313889670|ref|ZP_07823313.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Streptococcus
           pseudoporcinus SPIN 20026]
 gi|313121967|gb|EFR45063.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Streptococcus
           pseudoporcinus SPIN 20026]
          Length = 457

 Score = 84.0 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 75/220 (34%), Gaps = 16/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  FG   E+     + E + I +     +      DK+ ++  +   GVPV P    
Sbjct: 77  AIHPGFGFLSENSKFATMCEEMNIKFIGPAAIIMDKMGDKINARSEMKKAGVPVIPGSEG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
            +   +   +    +  P ++K   GG   GI  +     +      +S           
Sbjct: 137 EVFSAQEAQEVADKVGYPVMLKASAGGGGKGIRKVTTASELREAFESASQEALSAFGNGA 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+ +     +   ++ D+   V  +            K             I   + 
Sbjct: 197 MYVEKVIYPARHIEMQILADSYGHVIHLGERDCSLQRNNQKVL----EESPSIAIGETLR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           KE+   A  A QA+G       +FL D  S + +++E+N 
Sbjct: 253 KEMGDAAVKAAQAVGYENAGTIEFLLDEKSGQFYFMEMNT 292


>gi|293401735|ref|ZP_06645876.1| putative carbamoyl-phosphate synthase large chain
           [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291304687|gb|EFE45935.1| putative carbamoyl-phosphate synthase large chain
           [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 379

 Score = 84.0 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 35/181 (19%), Positives = 76/181 (41%), Gaps = 17/181 (9%)

Query: 89  LSMDKMRSKQVVSSCGVPVCPSI-LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147
           +  +K   ++   + G+ V   +        +     + P ++KP     S GI  I+  
Sbjct: 99  ICTNKYEMRKAFLANGIDVPKFLETKGHVEKEQLSSFTFPLIVKPTDRSGSRGITKIETY 158

Query: 148 QSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYS 207
           +++   +  ++++    + +IE++++G E +C  +             +  F ++  KY+
Sbjct: 159 EALDKAIQIATAYAFEKKAIIEEFIEGPEYSCECISYQG---------EHTFLAFTQKYT 209

Query: 208 SL-----NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLE 261
           S       + HV P+ IP+D     Q+  F A  A+  + G S  +F  D     +  +E
Sbjct: 210 SGAPHFIETGHVEPSNIPMDKITAYQKEIFKALDALHIQNGASHCEFKIDHQ-GAIKIIE 268

Query: 262 I 262
           I
Sbjct: 269 I 269


>gi|21535791|emb|CAC85727.1| putative carbamoyl phosphate synthase large subunit [Nicotiana
           tabacum]
          Length = 1203

 Score = 84.0 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 54/280 (19%), Positives = 102/280 (36%), Gaps = 38/280 (13%)

Query: 18  SGKACASALEDAGFKVSQID------------VDRS---------VGLVLAHLKPDLAFN 56
           SG     AL + G++V  I+             DR+         V  VL   +PD    
Sbjct: 125 SGTQACKALREEGYEVILINSNPATIMTDPEMADRTYIEPMTPELVEQVLERERPDALLP 184

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G    +  V      +L+   +    + + A   + D+   KQ + + G+   PS  
Sbjct: 185 TMGGQTALNLAVXLAESGVLDXYGVELIGAKLGAIKKAEDRDLFKQAMKNIGIKTPPSGI 244

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
              +      +  +   P +I+P       G  +    +          + +   Q+L+E
Sbjct: 245 GNTLEECIEIAGEIGEFPLIIRPAFTLGGTGGGIAYNREEFEAICKSGLAASLTSQVLVE 304

Query: 170 QYVDG-IELTCGVMGDASLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPAK-IPLDIYKE 226
           + + G  E    VM D + +V  I   ++ D           +S  V PA+ +    Y+ 
Sbjct: 305 KSLLGWKEYELEVMRDLADNVVIICSIENIDPMGVHT----GDSITVAPAQTLTDKEYQR 360

Query: 227 VQRLAFLAHQAIG--CRGISRSDFLFDPLSRKVFWLEINV 264
           ++  +    + IG  C G S   F  +P+  +V  +E+N 
Sbjct: 361 LRDYSIAIIREIGVECGG-SNVQFAVNPVDGEVMVIEMNP 399



 Score = 47.4 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 37/276 (13%), Positives = 92/276 (33%), Gaps = 40/276 (14%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLV------- 68
           AL+DAG++   +         D D S  L    L  +   N++    G DG++       
Sbjct: 683 ALQDAGYETIMMNSNPETVSTDYDTSDRLYFEPLTVEDVLNIID-LEGPDGIIVQFGGQT 741

Query: 69  --------QAILELLE---------IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
                   Q  L+            +    +   +   + D+ R   +++   +      
Sbjct: 742 PLKLALPIQNYLDERRPKTRSGAGFVRIWGTSPDSIDAAEDRERFNAILNELQIVQPKGG 801

Query: 112 LV--NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
           +    +  +     +  P V++P        + ++  +  +   L  +   +    +LI+
Sbjct: 802 IAKSEKDAVAIATEVGYPVVVRPSYVLGGRAMEIVYNNDKLVTYLENAVKVDPERPVLID 861

Query: 170 QYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           +Y+ D +E+    + D   +V    + +    +    +S  ++  +    I     + ++
Sbjct: 862 KYLTDAVEIDIDALADLHGNVVIGGIMEHIEQAGV--HSGDSACMLPTQTISDSCLETIR 919

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
                  + +   G+    +       +VF LE N 
Sbjct: 920 SWTTKLAKRLNVCGLMNCQYAISAS-GEVFLLEANP 954


>gi|58337650|ref|YP_194235.1| carbamoyl phosphate synthase large subunit [Lactobacillus
           acidophilus NCFM]
 gi|75357469|sp|Q5FJC0|CARB_LACAC RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|58254967|gb|AAV43204.1| carbamoyl-phosphate synthase, large subunit (glutamine-hydrolyzing)
           [Lactobacillus acidophilus NCFM]
          Length = 1062

 Score = 84.0 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 43/297 (14%), Positives = 97/297 (32%), Gaps = 38/297 (12%)

Query: 22  CASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ--- 69
           C  AL+  G++   I         D   S  L    L  +   NV      E  +VQ   
Sbjct: 577 CVKALQKMGYEAIVINSNPETVSTDFSVSDKLYFEPLTLEDVLNVCDLEEPEGVIVQFGG 636

Query: 70  -------AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDS 120
                  A LE   +    + +     + D+     ++    +     +        +++
Sbjct: 637 QTSINLAAGLEAHGVKILGTTVKDVNRAEDRKLFDDIIKELKLNQPQGLTATTHEGVIEA 696

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P +++P        + ++   + +   L           +L++ Y+DG E    
Sbjct: 697 AEKLGYPVLVRPSYVLGGKAMEIVYNKKELEEYLQDHVDIAADHPILVDDYLDGRECDVD 756

Query: 181 VMGDAS---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQ 236
            + D     L      +  +  +S        +S  V P +    +I +++  +      
Sbjct: 757 AISDGYDVLLPGIMEHIEHAGVHS-------GDSMAVYPPQTFTDEIKEKITEVTKKLAL 809

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            + C GI    F+      +V+ +E+N +   T     P ++   G    ++   ++
Sbjct: 810 TLNCVGIMNIQFIVR--DGEVYVIEVNPRASRT----VPFLSKITGIEMAQVATRVI 860



 Score = 74.4 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 49/289 (16%), Positives = 97/289 (33%), Gaps = 39/289 (13%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI---------DVD------------RSVGLV 45
           G ++E + S   G     AL + G++V  +         D               S+  +
Sbjct: 21  GQAAEFDYS---GTQACLALREEGYQVVLVNSNPATIMTDTTIADKVYIEPLTVDSISRI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +    PD     L G  G +  +      IL+ L I    + + +   + D+ + K +  
Sbjct: 78  IRQEYPDAILPTLGGQVGLNMALALAKTGILDELNIELLGTKLKSIEQAEDREQFKNLCK 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G PV PS  VN     ++    I  P +++P       G  +    + +         
Sbjct: 138 ELGEPVPPSKTVNTVEAAVEFGDEIGYPIIVRPAFTMGGTGGGICHNRKELAEIAKNGLE 197

Query: 160 WNHGDQLLIEQYVDG---IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216
            +   + LIE+ + G   IE       D +  +            +     + +S    P
Sbjct: 198 LSPVTECLIEKSIAGYKEIEFEVMRDHDDNAMIVCCMENFDPVGIH-----TGDSIVFSP 252

Query: 217 AK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           ++ +    Y+ ++  +    +A+   G        DP S     +E+N 
Sbjct: 253 SQTLSDKEYQMLRDCSLKLIRALKIEGGCNVQLALDPNSFDYDVIEVNP 301


>gi|209155606|gb|ACI34035.1| Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial
           precursor [Salmo salar]
          Length = 708

 Score = 84.0 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 77/221 (34%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       +   I +      A      K  SK ++S+ GVP+      
Sbjct: 112 AVHPGYGFLSENTEFAEACKQEGIIFIGPPSSAIRDMGIKSTSKYIMSAAGVPIIEGYHG 171

Query: 114 NRFTMDSQHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
              + +        I  P +IK ++GG   G+ +    +     L  +          D 
Sbjct: 172 EDQSDEKLQAEAVRIGYPVMIKAVRGGGGKGMRISHTAEDFHEQLESARREARKSFNDDV 231

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDI 223
           +L+E++V D   +   V GD   +   +           ++          P   I  ++
Sbjct: 232 MLVEKFVEDPRHVEVQVFGDQHGNAVYL-----FERDCSVQRRHQKIIEEAPGPGISEEV 286

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             ++   A  A +A+   G    +F+ D      +++E+N 
Sbjct: 287 RCKLGEAAVRAAKAVNYVGAGTVEFIMDAQHN-FYFMEMNT 326


>gi|116511467|ref|YP_808683.1| pyruvate carboxylase [Lactococcus lactis subsp. cremoris SK11]
 gi|116107121|gb|ABJ72261.1| Pyruvate carboxylase [Lactococcus lactis subsp. cremoris SK11]
          Length = 1137

 Score = 84.0 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 47/278 (16%), Positives = 101/278 (36%), Gaps = 30/278 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVS--QIDVDRSVGLVLAHLKPDLAFNVL 58
           +AV     + E E S+   KA  S L   G K     +D+D  + + L     D     +
Sbjct: 28  VAV----YAREDEYSVHRFKADESYLIGQGKKPIDAYLDIDDIIRVAL-ESGAD----AI 78

Query: 59  HGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC---GVPVCPSIL 112
           H  +G   E+      +    + +    +    +  DK+++K         G+P     +
Sbjct: 79  HPGYGLLSENLEFATKVRAAGLVFVGPELHHLDIFGDKIKAKAAADEAQVPGIPGTNGAV 138

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG----DQLLI 168
                ++       P +IK   GG   G+ V + D  +     ++ S   G     ++ +
Sbjct: 139 DIDGALEFAQTYGYPVMIKAALGGGGRGMRVARNDAEMHDGYARAKSEAIGAFGSGEIYV 198

Query: 169 EQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKE 226
           E+Y++    +   ++GD+  ++              ++  +     + PA  +  +   E
Sbjct: 199 EKYIENPKHIEVQILGDSHGNIV-----HLHERDCSVQRRNQKVIEIAPAVGLSPEFRNE 253

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +   A    + +G       +FL      K +++E+N 
Sbjct: 254 ICEAAVKLCKNVGYVNAGTVEFLV--KDDKFYFIEVNP 289


>gi|306836603|ref|ZP_07469570.1| acetyl-CoA carboxylase subunit A [Corynebacterium accolens ATCC
           49726]
 gi|304567525|gb|EFM43123.1| acetyl-CoA carboxylase subunit A [Corynebacterium accolens ATCC
           49726]
          Length = 458

 Score = 84.0 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 87/220 (39%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E      ++E  EI +         L  DK+ +K++  S GVP  P    
Sbjct: 80  AIHPGYGFLSEKPDFVRMVEEEEIGFVGPSAEHIGLMGDKIAAKRIAKSAGVPTVPGSDG 139

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ----SSSWNHGDQ 165
            +      ++  H    P +IK   GG   G+ V++ + ++  DL +    + S  +   
Sbjct: 140 VVTEFDEALEVAHNTGFPLLIKAAAGGGGRGMRVVESEDTLEKDLNEIMNEAESAFNDPS 199

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+++     +   V+ D      E AV   +      + +           +  ++ 
Sbjct: 200 VYIERFLTDIRHIEIQVLADG-----ENAVALGERDCTSQRRNQKLIEEGPSPVLTDELR 254

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +E+Q  A    + +  +     +F+FD    K +++E+N 
Sbjct: 255 QEMQEAAINLCKEVKYKNAGTIEFVFDNTEDKFYFIEMNT 294


>gi|288819214|ref|YP_003433562.1| biotin carboxylase [Hydrogenobacter thermophilus TK-6]
 gi|116235002|dbj|BAF34940.1| biotin carboxylase [Hydrogenobacter thermophilus]
 gi|288788614|dbj|BAI70361.1| biotin carboxylase [Hydrogenobacter thermophilus TK-6]
 gi|308752796|gb|ADO46279.1| acetyl-CoA carboxylase, biotin carboxylase [Hydrogenobacter
           thermophilus TK-6]
          Length = 444

 Score = 84.0 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 46/218 (21%), Positives = 86/218 (39%), Gaps = 16/218 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     I+      +         L  DK+ SK+V    G+P+ P    
Sbjct: 77  AVHPGYGFLAENPRFAEIVSASNKIFIGPPSHVLELIGDKIMSKEVAKKVGIPLVPGSDG 136

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS----IPLDLLQSSSWNHGDQL 166
            +  +  +D+ + I  P VIK   GG   GI V++ ++     +PL + ++       ++
Sbjct: 137 CVDIKEAIDTANRIGYPVVIKASAGGGGRGIRVVRNEKELREKLPLAIEEAKVAFGDGRV 196

Query: 167 LIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
            IE+Y ++   +   V+ D    V  +   +        K             I     K
Sbjct: 197 YIEKYLINPKHIEVQVLADKYGHVISLGERECSIQRRNQK----LIEEAPSISIDEVQRK 252

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
           +++  A    +AIG  G    +FL D    K +++E+N
Sbjct: 253 QIEEAAVEFCKAIGYEGAGTVEFLMD-QDGKFYFMEMN 289


>gi|302339420|ref|YP_003804626.1| ATP-dependent carboxylate-amine ligase domain protein ATP-grasp
           [Spirochaeta smaragdinae DSM 11293]
 gi|301636605|gb|ADK82032.1| ATP-dependent carboxylate-amine ligase domain protein ATP-grasp
           [Spirochaeta smaragdinae DSM 11293]
          Length = 555

 Score = 84.0 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 36/174 (20%), Positives = 76/174 (43%), Gaps = 8/174 (4%)

Query: 67  LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP 126
            V  + E L +P     + A+  + DK   ++ +S   V V   + +     +    +S 
Sbjct: 93  TVARVAEKLTLP--GISVKAAMAASDKALMRRTLSDANVRVPRFVQLADGEKEIPKELSY 150

Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC-GVMGDA 185
           P V+KP+    + G+  +  D+ +   L  +  ++    +++E+++DG E +   ++   
Sbjct: 151 PLVVKPVDNMGARGVRRVDNDEELSSALDDAFRFSRSGSVIVEEFLDGPEFSIDALVEKG 210

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
            +    IA     F  Y ++       H +P+  P D+ +EV+     A +AIG
Sbjct: 211 QVRFCGIADRHITFAPYFVEMG-----HTIPSSAPADMIEEVKGEFLKAVEAIG 259


>gi|144899547|emb|CAM76411.1| Propionyl-CoA carboxylase alpha subunit [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 662

 Score = 84.0 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 76/220 (34%), Gaps = 16/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E    Q  L    I +      A     DK+ SK++    GV   P    
Sbjct: 77  AVHPGYGFLSEKREFQEALAKAGITFIGPDSHAIFCMGDKIESKKLARQAGVNTVPGHMD 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL----DLLQSSSWNHGDQ 165
            I      +D    I  P +IK   GG   G+ +   +            ++ S    D+
Sbjct: 137 VIRDADHAVDIAGQIGYPVMIKASAGGGGKGMRLAWNEAEAREGFVSATNEAKSSFADDR 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE++++    +   V+ D+  +   +   +        K             +  ++ 
Sbjct: 197 VFIEKFIEQPRHIEIQVLADSFGNTIYLGERECSIQRRHQK----VIEEAPSPFLSPEMR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K +   A    +++  +     +F+    + + ++LE+N 
Sbjct: 253 KAMGEQACALAKSVQYKSAGTVEFIVGGATGEFYFLEMNT 292


>gi|167034661|ref|YP_001669892.1| carbamoyl-phosphate synthase L chain ATP-binding [Pseudomonas
           putida GB-1]
 gi|166861149|gb|ABY99556.1| Carbamoyl-phosphate synthase L chain ATP-binding [Pseudomonas
           putida GB-1]
          Length = 650

 Score = 84.0 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 81/220 (36%), Gaps = 19/220 (8%)

Query: 58  LHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
           +H  +G   E+      +E   + +      A      K  +K ++ + GVP+ P     
Sbjct: 82  IHPGYGFLSENAGFARAIEQAGLIFLGPPASAIDAMGSKSAAKALMEAAGVPLVPGYHGE 141

Query: 115 RFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQL 166
              +D    +   I  P ++K   GG   G+ V++++  +   L  +           ++
Sbjct: 142 AQDLDTFRAAAERIGYPVLLKASAGGGGKGMKVVEEESQLADALASAQREAQSSFGDSRM 201

Query: 167 LIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIY 224
           L+E+YV     +   V  D   +   +            K          PA  +  ++ 
Sbjct: 202 LVEKYVLKPRHVEIQVFADQHGNCLYLNERDCSIQRRHQK-----VVEEAPAPGLSPELR 256

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +   A  A QAIG  G    +FL D    + F++E+N 
Sbjct: 257 RAMGEAAVRAAQAIGYVGAGTVEFLLDAR-GEFFFMEMNT 295


>gi|118470640|ref|YP_884747.1| acetyl-/propionyl-coenzyme A carboxylase alpha chain [Mycobacterium
           smegmatis str. MC2 155]
 gi|118171927|gb|ABK72823.1| acetyl-/propionyl-coenzyme A carboxylase alpha chain [Mycobacterium
           smegmatis str. MC2 155]
          Length = 669

 Score = 84.0 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 37/223 (16%), Positives = 86/223 (38%), Gaps = 22/223 (9%)

Query: 58  LHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
           +H  +G   E+           + +      A A    K+ +K+++++ GVPV P + V 
Sbjct: 84  IHPGYGFLSENADFAKACAESGVIFVGPSPEAIASMGSKIAAKEMMAAAGVPVLPGVTVG 143

Query: 115 RFTMDSQHLI-------SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL-----QSSSWNH 162
                    +         P ++K   GG   G+ ++  +  +   +       +S++  
Sbjct: 144 ADEDADPDKLRKAAAETGFPILVKAAFGGGGRGMRIVADEDELLEAVAGARREAASAFG- 202

Query: 163 GDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL 221
              + +E++V+    +   + GD+   V  +   +    S + +Y  +         +  
Sbjct: 203 DGTVFLEKFVESPRHIEVQIFGDSHGTVVHLGERE---CSIQRRYQKI-IEEAPSTAVDP 258

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +E+ R A  A +A+   G    +F+  P     ++LE+N 
Sbjct: 259 ALREELGRAAVAAGKALAYEGAGTVEFVMAP-DGSFYFLEVNT 300


>gi|110802163|ref|YP_698464.1| biotin carboxylase [Clostridium perfringens SM101]
 gi|110682664|gb|ABG86034.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Clostridium
           perfringens SM101]
          Length = 450

 Score = 84.0 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 85/221 (38%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  FG   E+     + E   I +      A  L  +K  +++++    VPV P    
Sbjct: 77  AIHPGFGFLSENPRFAKMCEECNIEFIGPNWRAIELMGNKAMAREIMKKADVPVVPGYEG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL----DLLQSSSWNHGDQ 165
            I    F +     I  P ++K   GG   GI ++ K++           ++ +    D+
Sbjct: 137 EIESPEFALKIAKKIGFPVIVKASSGGGGKGIRIVYKEEDFISNYNTAKSEAQANFGDDK 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           + IE++V+    +   ++ D   +                +  +       P+  +  + 
Sbjct: 197 IYIERFVENPKHIEVQLLCDKHGNAL-----HLFERDCSAQRKNQKVLEEAPSSILSGEQ 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             ++ ++A  A +A+    +   +FL D  + + +++E+N 
Sbjct: 252 RDKLGKIAVKAAKAVNYSNVGTIEFLLDK-NGEFYFMEMNT 291


>gi|114570298|ref|YP_756978.1| carbamoyl-phosphate synthase L chain, ATP-binding [Maricaulis maris
           MCS10]
 gi|114340760|gb|ABI66040.1| biotin carboxyl carrier protein / biotin carboxylase [Maricaulis
           maris MCS10]
          Length = 669

 Score = 84.0 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 45/220 (20%), Positives = 80/220 (36%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  FG   E+  +   LE   I +    I A     DK+RSKQ+ +  GV   P    
Sbjct: 77  AVHPGFGFLSENPALPKALEKAGIGWIGPNIHAIDAMGDKIRSKQLAAKAGVSTIPGADG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS----IPLDLLQSSSWNHGDQ 165
            I      + +   I  P ++K   GG   G+ + + D            ++ S    D+
Sbjct: 137 EIADAETALAAAKAIGYPVMLKASAGGGGKGMRIARSDSEVKEGFKAARNEAKSSFGDDR 196

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           +LIE++++    +   VMGD    V  +   +        K             +     
Sbjct: 197 ILIEKFIEEPRHIEIQVMGDKHGHVIHLNERECSIQRRNQKVL----EEAPSPFLDKKTR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +   A     A+        +F+ D   +K ++LE+N 
Sbjct: 253 EAMGAQAVSLAAAVDYDSAGTVEFIVDK-DKKFYFLEMNT 291


>gi|319892112|ref|YP_004148987.1| Pyruvate carboxyl transferase [Staphylococcus pseudintermedius
           HKU10-03]
 gi|317161808|gb|ADV05351.1| Pyruvate carboxyl transferase [Staphylococcus pseudintermedius
           HKU10-03]
 gi|323464777|gb|ADX76930.1| pyruvate carboxylase [Staphylococcus pseudintermedius ED99]
          Length = 1149

 Score = 84.0 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 32/221 (14%), Positives = 78/221 (35%), Gaps = 20/221 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+           I +    +    +  DK++++       +PV P    
Sbjct: 80  AIHPGYGFLSENMQFAQRCAEEGIVFIGPHVEHLDMFGDKVKARATAIKADLPVIPGTDG 139

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
            +               P +IK   GG   G+ ++++   +     ++ S         +
Sbjct: 140 PVAGFEEAQTFAEKAGFPLMIKATSGGGGKGMRIVREPSELQEAFTRAKSEAEKSFGNSE 199

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDI 223
           + IE+++D    +   VMGD + ++  +           ++        V P   +P ++
Sbjct: 200 VYIEKFIDQPKHIEVQVMGDEAGNIIHLYE-----RDCSVQRRHQKVVEVAPSVSLPDNL 254

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +++   A    + I        +FL      + +++E+N 
Sbjct: 255 REQICEAAVDLMRQIQYVNAGTVEFLV--SGNEFYFIEVNP 293


>gi|242242795|ref|ZP_04797240.1| acetyl-CoA carboxylase biotin carboxylase subunit [Staphylococcus
           epidermidis W23144]
 gi|242233931|gb|EES36243.1| acetyl-CoA carboxylase biotin carboxylase subunit [Staphylococcus
           epidermidis W23144]
          Length = 452

 Score = 84.0 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 35/216 (16%), Positives = 77/216 (35%), Gaps = 15/216 (6%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVN 114
           +G   E+G    + E  ++ +      +      K  +K  +    VPV P     I   
Sbjct: 81  YGFLAENGDFAELCEACQLKFIGPSYQSIQKMGIKDIAKAEMIKANVPVVPGSEGLIQSI 140

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGDQLLIE 169
                +   I  P +IK   GG   GI V + ++ +            +++ +G   L E
Sbjct: 141 DDAKKTAKKIGYPVIIKATAGGGGKGIRVARDEKELETGYRMTQQEAETAFGNGGLYL-E 199

Query: 170 QYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           ++++    +   ++GD   +V  +            +             +  D  +E+ 
Sbjct: 200 KFIENFRHIEIQIIGDTYGNVIHLGERDCTI----QRRMQKLVEEAPSPVLSEDKRQEMG 255

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             A  A +A+        +F++D    + +++E+N 
Sbjct: 256 NAAIRAAKAVNYENAGTIEFIYDLDDNQFYFMEMNT 291


>gi|116331304|ref|YP_801022.1| Acetyl/propionyl-CoA carboxylase, alpha subunit [Leptospira
           borgpetersenii serovar Hardjo-bovis JB197]
 gi|116124993|gb|ABJ76264.1| Acetyl/propionyl-CoA carboxylase, alpha subunit [Leptospira
           borgpetersenii serovar Hardjo-bovis JB197]
          Length = 487

 Score = 84.0 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 79/220 (35%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E       L+   + +      +  L  DK+ S+  + + GVPV P    
Sbjct: 77  AVHPGYGFLSEKSEFAKALQKENVLFLGPTPESMELMGDKINSRIKMEASGVPVVPGYNG 136

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQS----IPLDLLQSSSWNHGDQ 165
                +        I  P +IK   GG   G+  + K +     +     ++        
Sbjct: 137 QDQNPNVLQREAEKIGYPLMIKATAGGGGKGMKRVYKPEEFLTSLESAQREAQKAFGDGT 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+Y++    +   V GD   +V  +   +        K             +P ++ 
Sbjct: 197 VFLEKYIEMPRHVEVQVFGDKHGNVMHLFERECSIQRRHQK----VIEESPAPNLPAELR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            E+ ++A  A Q+I   G    +F+      K ++LE+N 
Sbjct: 253 DEICQVAVKAAQSIDYVGAGTVEFIL-GKDGKFYFLEMNT 291


>gi|110680056|ref|YP_683063.1| acetyl-CoA carboxylase biotin carboxylase subunit [Roseobacter
           denitrificans OCh 114]
 gi|109456172|gb|ABG32377.1| acetyl-CoA carboxylase, biotin carboxylase [Roseobacter
           denitrificans OCh 114]
          Length = 450

 Score = 84.0 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 41/221 (18%), Positives = 78/221 (35%), Gaps = 20/221 (9%)

Query: 57  VLHGNFG---ED-GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--- 109
            +H  +G   E+ G VQ I+E   I +         +  DK+ +K+ + + GVP  P   
Sbjct: 77  AIHPGYGFLSENAGFVQ-IVEDHGISFIGPTAEHIRIMGDKITAKETMKNLGVPCVPGSD 135

Query: 110 -SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GD 164
             +            I  P +IK   GG   G+ V +  + +    L + +        D
Sbjct: 136 GGVATLEEAQRIGAEIGYPVIIKATAGGGGRGMKVAQNAEEMEKAFLTARAEGKSNFGND 195

Query: 165 QLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           ++ IE+Y+     +   V GD       +            K             I  + 
Sbjct: 196 EVYIEKYLTTPRHIEIQVFGDGKGRAVHLGERDCSLQRRHQKVF----EEAPGPSISAEE 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              + ++   A   I   G    +FL+   + + +++E+N 
Sbjct: 252 RMAIGKVCADAVARINYIGAGTIEFLY--ENGEFYFIEMNT 290


>gi|296170429|ref|ZP_06852017.1| acetyl/propionyl-CoA carboxylase [Mycobacterium parascrofulaceum
           ATCC BAA-614]
 gi|295894900|gb|EFG74621.1| acetyl/propionyl-CoA carboxylase [Mycobacterium parascrofulaceum
           ATCC BAA-614]
          Length = 670

 Score = 83.6 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 77/221 (34%), Gaps = 17/221 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+    A  E   + +      A  +  DK+ +K  V++  VPV P +  
Sbjct: 79  AIHPGYGFLSENAEFAAACERAGVAFLGPSARAIQVMGDKITAKNAVAAFDVPVVPGVAK 138

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
              + D    +   +  P +IKP  GG   G+ ++     +   LL +          D 
Sbjct: 139 PGLSDDELVAAADEVGYPVLIKPSAGGGGKGMRLVDDPSRLRDALLSARREAASSFGDDT 198

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           L +E++V     +   V+ D   +V  +   +        K             +     
Sbjct: 199 LFLERFVLRPRHIEVQVLADTHGNVVHLGERECSLQRRHQK----VIEEAPSPLLDPQTR 254

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLS-RKVFWLEINV 264
             +   A    +++   G    +F+       + F++E+N 
Sbjct: 255 ARIGAAACNTARSVDYVGAGTVEFIVSADRPDEFFFMEMNT 295


>gi|150019768|ref|YP_001312022.1| pyruvate carboxylase [Clostridium beijerinckii NCIMB 8052]
 gi|149906233|gb|ABR37066.1| pyruvate carboxylase [Clostridium beijerinckii NCIMB 8052]
          Length = 1146

 Score = 83.6 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 51/262 (19%), Positives = 96/262 (36%), Gaps = 30/262 (11%)

Query: 25  AL-EDAGFKVSQIDVDRSVGLVLAHLKPDLAFN--------VLHGNFG---EDGLVQAIL 72
           AL      +  QI   ++ G V A+L  D   N         +H  +G   E+       
Sbjct: 42  ALFRTKAHEAYQIG--KNKGPVEAYLNIDEIINLALKKHVDAIHPGYGFLSENPDFARRC 99

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI----LVNRFTMDSQHLISPPY 128
           E   I +            DK++SK V    GVPV P +          ++   +   P 
Sbjct: 100 EEAGIEFIGPKSEMMEKLGDKIKSKIVAKEVGVPVIPGVEKPISSEEEAIEIAKICGFPV 159

Query: 129 VIKPLKGGSSLGIIVIKKDQSIPL----DLLQSSSWNHGDQLLIEQYVDG-IELTCGVMG 183
           +IK   GG   G+ +++ +  +         ++      D + IE+Y++G   +   V+G
Sbjct: 160 MIKAAAGGGGRGMRIVRSENELLPSFRNAKNEAKKAFGNDDMFIEKYIEGPKHIEIQVLG 219

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRG 242
           D   ++  +            K        + PA  +  +  +E+   A    +++G R 
Sbjct: 220 DKHGNIVHLYERDCSIQRRHQK-----VIEIAPALSLTQEKREEICVDALKIAKSVGYRS 274

Query: 243 ISRSDFLFDPLSRKVFWLEINV 264
               +FL D      +++E+N 
Sbjct: 275 AGTLEFLVDMHGNH-YFIEMNP 295


>gi|116627302|ref|YP_819921.1| acetyl-CoA carboxylase biotin carboxylase subunit [Streptococcus
           thermophilus LMD-9]
 gi|116100579|gb|ABJ65725.1| biotin carboxylase / acetyl-coenzyme A carboxylase carboxyl
           transferase subunit alpha [Streptococcus thermophilus
           LMD-9]
          Length = 456

 Score = 83.6 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 75/220 (34%), Gaps = 16/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  FG   E+     + E + I +            DK+ ++  +    VPV P    
Sbjct: 77  AIHPGFGFLSENSKFATLCEEMNIKFIGPSGEIMDKMGDKINARAEMIRANVPVIPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
            +      ++  + +  P ++K   GG   GI  +   + +      +S           
Sbjct: 137 EVFTAEEALEVANRLGYPVMLKASAGGGGKGIRKVNTKEELAPAFESASQEAKVSFGNGA 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+ +     +   ++GD+  ++  +            K             I   + 
Sbjct: 197 MYIEKVIYPARHIEVQILGDSYGNIVHLGERDCSLQRNNQKVL----EESPSVAIGKTLR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            E+   A  A +A+        +FL D  S + +++E+N 
Sbjct: 253 DEIGSAAVRAAKAVNYENAGTIEFLLDEKSGQFYFMEMNT 292


>gi|294778066|ref|ZP_06743500.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Bacteroides
           vulgatus PC510]
 gi|294448124|gb|EFG16690.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Bacteroides
           vulgatus PC510]
          Length = 503

 Score = 83.6 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 41/223 (18%), Positives = 86/223 (38%), Gaps = 23/223 (10%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       +   I +            DK+ +++ + + GVPV P    
Sbjct: 77  AIHPGYGFLSENADFARRCKEEGIIFIGPAAETMEAMGDKIAARKRMIAAGVPVVPGTEQ 136

Query: 114 NRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
              + +      + I  P ++K   GG   G+ +I  +  +      + S +      D 
Sbjct: 137 PLQSAEEAVRICNEIGYPVMLKASMGGGGKGMRLIHSEDEVVEAYNTARSESMSSFGDDT 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK---IPL 221
           + +E++V D   +   ++GD   +V  +       +  E      N   V  +    +  
Sbjct: 197 VYLEKFVEDPHHIEFQILGDNHGNVIHL-------FDRECSVQRRNQKIVEESPSPFLTP 249

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           ++ +E+   A  A +A+   G    +FL D  +R  ++LE+N 
Sbjct: 250 ELRQEMGEKAVAAARAVNYSGAGTIEFLVDK-NRNFYFLEMNT 291


>gi|289551015|ref|YP_003471919.1| Carbamoyl-phosphate synthase large chain [Staphylococcus
           lugdunensis HKU09-01]
 gi|289180547|gb|ADC87792.1| Carbamoyl-phosphate synthase large chain [Staphylococcus
           lugdunensis HKU09-01]
          Length = 1057

 Score = 83.6 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 51/297 (17%), Positives = 113/297 (38%), Gaps = 36/297 (12%)

Query: 25  ALEDAGFKVSQID---------------------VDRSVGLVLAHLKPDLAFNVLHGNFG 63
           AL++ G++V  ++                         +  ++   +PD     L G  G
Sbjct: 36  ALKEEGYRVILVNSNPATIMTDKEIADKVYIEPLTHDFIARIIRKEQPDALLPTLGGQTG 95

Query: 64  EDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
            +  +Q     +LE   +    + + +   + D+   + +++   VPV  S +VN     
Sbjct: 96  LNMAIQLHESGVLEANNVKLLGTELKSIQQAEDRELFRTLMNDLDVPVPESDIVNTVEQA 155

Query: 120 S--QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IE 176
              +  +  P +++P       G  +   D+ +   +     ++   Q LIE+ + G  E
Sbjct: 156 FSFKEQVGYPLIVRPAFTMGGTGGGICHNDEELKEVVSNGLHYSPATQCLIEKSIAGFKE 215

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAH 235
           +   VM D + +   I V   +     +   + +S  V P++ +    Y+ ++ ++    
Sbjct: 216 IEYEVMRDKNDNA--IVVCNMENID-PVGIHTGDSIVVAPSQTLSDVEYQMLRDVSLKVI 272

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +A+G  G        DP S   + +E+N  P ++  S     +   GY   +L   +
Sbjct: 273 RALGIEGGCNVQLALDPHSFNYYIIEVN--PRVSRSS--ALASKATGYPIAKLAAKI 325



 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 24/192 (12%), Positives = 67/192 (34%), Gaps = 9/192 (4%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPL 133
            +    + +     + D+   + ++    VP          +  +++   I  P V++P 
Sbjct: 650 GVQILGTSLEDLNRAEDRKEFEALLRDIHVPQPKGKTATSPQEALNNAREIGYPVVVRPS 709

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
                  + ++  DQ +   + Q+   +    +L+++Y+ G E+    + D    +    
Sbjct: 710 YVLGGRAMEIVDNDQELENYMEQAVKASPEHPVLVDRYLTGKEIEVDAISDGDTVIIPGI 769

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
           +   +           +S  V P + +  +    ++       + +   G+    F+   
Sbjct: 770 MEHIERAGVHS----GDSIAVYPPQTLSQEELDTLEDYTIKLAKGLNIVGLINIQFVIAH 825

Query: 253 LSRKVFWLEINV 264
               V+ LE+N 
Sbjct: 826 DG--VYVLEVNP 835


>gi|227503156|ref|ZP_03933205.1| acetyl-CoA carboxylase [Corynebacterium accolens ATCC 49725]
 gi|227076217|gb|EEI14180.1| acetyl-CoA carboxylase [Corynebacterium accolens ATCC 49725]
          Length = 458

 Score = 83.6 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 87/220 (39%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E      ++E  EI +         L  DK+ +K++  S GVP  P    
Sbjct: 80  AIHPGYGFLSEKPDFVRMVEEEEIGFVGPSAEHIGLMGDKIAAKRIAKSAGVPTVPGSDG 139

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ----SSSWNHGDQ 165
            +      ++  H    P +IK   GG   G+ V++ + ++  DL +    + S  +   
Sbjct: 140 VVTEFDEALEVAHNTGFPLLIKAAAGGGGRGMRVVESEDTLEKDLNEIMNEAESAFNDPS 199

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+++     +   V+ D      E AV   +      + +           +  ++ 
Sbjct: 200 VYIERFLTDIRHIEIQVLADG-----ENAVALGERDCTSQRRNQKLIEEGPSPVLTDELR 254

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +E+Q  A    + +  +     +F+FD    K +++E+N 
Sbjct: 255 QEMQEAAINLCKEVKYKNAGTIEFVFDNTEDKFYFIEMNT 294


>gi|322704234|gb|EFY95831.1| pyruvate carboxylase, putative [Metarhizium anisopliae ARSEF 23]
          Length = 647

 Score = 83.6 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 45/218 (20%), Positives = 85/218 (38%), Gaps = 14/218 (6%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E       +E   I     G    A + DK+++KQ+   C VPV P++  
Sbjct: 80  AVHPGYGFLSESADFARQMEESGILVIGPGPEILARTGDKLQAKQLALECHVPVLPAMTH 139

Query: 114 NRFTM----DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
               +    +    +  P ++K + GG   GI +++ D  +   +  +++ +    +  E
Sbjct: 140 PVADLASVREFIQQVGYPVMVKAVDGGGGRGIRLVRNDGELENSVRAATNESPSKSVFAE 199

Query: 170 QY-VDGIE-LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL-DIYKE 226
           +   DG   +   V+GD +      AV         ++        V PA      +  E
Sbjct: 200 KAATDGFHHVEIQVIGDGA----NAAVCHLWERDCSVQRRFQKIVEVAPALFSNRSLIDE 255

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +   A    +AI  R +   +FL +      ++LEIN 
Sbjct: 256 LAGAAVRMARAIRYRSLGTVEFLVNEKEDVFYFLEINP 293


>gi|319400862|gb|EFV89081.1| acetyl-CoA carboxylase, biotin carboxylase [Staphylococcus
           epidermidis FRI909]
          Length = 452

 Score = 83.6 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 35/216 (16%), Positives = 77/216 (35%), Gaps = 15/216 (6%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVN 114
           +G   E+G    + E  ++ +      +      K  +K  +    VPV P     I   
Sbjct: 81  YGFLAENGDFAELCEACQLKFIGPSYQSIQKMGIKDIAKAEMIKANVPVVPGSEGLIQSI 140

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGDQLLIE 169
                +   I  P +IK   GG   GI V + ++ +            +++ +G   L E
Sbjct: 141 DDAKKTAKKIGYPVIIKATAGGGGKGIRVARDEKELETGYRMTQQEAETAFGNGGLYL-E 199

Query: 170 QYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           ++++    +   ++GD   +V  +            +             +  D  +E+ 
Sbjct: 200 KFIENFRHIEIQIIGDTYGNVIHLGERDCTI----QRRMQKLVEEAPSPVLSEDKRQEMG 255

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             A  A +A+        +F++D    + +++E+N 
Sbjct: 256 NAAIRAAKAVNYENAGTIEFIYDLDDNQFYFMEMNT 291


>gi|269127904|ref|YP_003301274.1| carbamoyl-phosphate synthase L chain ATP- binding protein
           [Thermomonospora curvata DSM 43183]
 gi|268312862|gb|ACY99236.1| Carbamoyl-phosphate synthase L chain ATP- binding protein
           [Thermomonospora curvata DSM 43183]
          Length = 444

 Score = 83.6 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 45/244 (18%), Positives = 85/244 (34%), Gaps = 23/244 (9%)

Query: 34  SQIDVDRSVGLV----LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
           S +D DR +          + P   F      F E    Q ++      +     LA A 
Sbjct: 59  SYLDADRVLEAARRTNAQAIHPGYGFLAESAEFAERVTDQGLV------WIGPPPLAIAR 112

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVN----RFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145
             DK+ ++ ++   GVPV   +          +     I  P ++K   GG  +G+   +
Sbjct: 113 MGDKINARNLMIEAGVPVAAGVWEPVPDAATALAEAERIGYPVMVKAAGGGGGIGMGAAR 172

Query: 146 KDQSI----PLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFY 200
            +  +          +  +     +L+E+YV+    +   ++G A   V  +        
Sbjct: 173 DEAELVKVYASARSSAERFFRNPDILLERYVERARHVEVQILGLADGTVVALGERDCSVQ 232

Query: 201 SYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260
               K             +   +   + + A  A +A+G RG    +FL D  S +  +L
Sbjct: 233 RRHQKI----VEETPSPGVDAALRARMTQAAVRAGEAVGYRGAGTVEFLLDVDSGEFVFL 288

Query: 261 EINV 264
           E+N 
Sbjct: 289 EMNT 292


>gi|169342362|ref|ZP_02863428.1| acetyl-CoA carboxylase, biotin carboxylase [Clostridium perfringens
           C str. JGS1495]
 gi|169299482|gb|EDS81546.1| acetyl-CoA carboxylase, biotin carboxylase [Clostridium perfringens
           C str. JGS1495]
          Length = 450

 Score = 83.6 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 85/221 (38%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  FG   E+     + E   I +      A  L  +K  +++++    VPV P    
Sbjct: 77  AIHPGFGFLSENPRFAKMCEECNIEFIGPNWRAIELMGNKAMAREIMKKADVPVVPGYEG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL----DLLQSSSWNHGDQ 165
            I    F +     I  P ++K   GG   GI ++ K++           ++ +    D+
Sbjct: 137 EIESPEFALKIAKKIGFPVIVKASSGGGGKGIRIVYKEEDFISNYNTAKSEAQANFGDDK 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           + IE++V+    +   ++ D   +                +  +       P+  +  + 
Sbjct: 197 IYIERFVENPKHIEVQLLCDKHGNAL-----HLFERDCSAQRKNQKVLEEAPSSILSGEQ 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             ++ ++A  A +A+    +   +FL D  + + +++E+N 
Sbjct: 252 RDKLGKIAVKAAKAVNYSNVGTIEFLLDK-NGEFYFMEMNT 291


>gi|15805157|ref|NP_293843.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Deinococcus
           radiodurans R1]
 gi|6457782|gb|AAF09707.1|AE001874_4 acetyl-CoA carboxylase, biotin carboxylase subunit [Deinococcus
           radiodurans R1]
          Length = 445

 Score = 83.6 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 34/219 (15%), Positives = 74/219 (33%), Gaps = 17/219 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+     +     I +      +      K   +++ +   VP  P   V
Sbjct: 77  AIHPGYGFMAENPDFAEMCREHGIVFIGPTPESMRALGSKAGGREIAAQSNVPTVPGTGV 136

Query: 114 NRF---TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSWNHGDQL 166
                  + +   I  P ++K   GG   G  VI+  + +         ++  +     +
Sbjct: 137 LESVDAALLAAKQIGYPVLLKASAGGGGRGQKVIRTQEELQKGFNQAQEEARLYFGDPAI 196

Query: 167 LIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
           ++E++++    +   VMGD    V  I            K          P+ +P  + +
Sbjct: 197 IMEKFLEEFRHIEVQVMGDGQGHVIHIGERDCSIQRRNQKL-----IEEAPSTLPESLRQ 251

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           E+        Q +   G    +F+ D      +++E+N 
Sbjct: 252 EILAAGVRLAQFVNYAGAGTLEFIMD-RDGNYYFMEMNT 289


>gi|319648398|ref|ZP_08002614.1| hypothetical protein HMPREF1012_03653 [Bacillus sp. BT1B_CT2]
 gi|317389477|gb|EFV70288.1| hypothetical protein HMPREF1012_03653 [Bacillus sp. BT1B_CT2]
          Length = 378

 Score = 83.6 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 41/233 (17%), Positives = 92/233 (39%), Gaps = 26/233 (11%)

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKP 132
           E L +P             +K +++ ++   G+        +         +S P V+KP
Sbjct: 48  EALNLP--GLPFTTMENCRNKNKTRSILQQNGLNTPVFHEFHTLADLENRKLSYPLVVKP 105

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSS--------WNHGDQ-LLIEQYVDGIEL---TCG 180
           + G SS G++ +   + +   + +  +        + HG   ++ EQ++DG E    T  
Sbjct: 106 VNGFSSQGVVRVDDRKELEEAVRKVEAVNQRDLNRFVHGKTGIVAEQFIDGPEFAIETLS 165

Query: 181 VMGD-ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
           + G+   L +      K  F+            ++ PA++  +    + +    A  A+G
Sbjct: 166 IQGNVHVLSIGYKGNSKGPFF--------EEGVYIAPAQLKEETRLAIVKEVTGAVSALG 217

Query: 240 C-RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             +G + ++   D      + +E+  + G + VS +  +    G +F +L+L 
Sbjct: 218 IHQGPAHTELRLDK-DGTPYVIEVGARIGGSGVSHY-IVKESTGINFMQLVLQ 268


>gi|315658510|ref|ZP_07911382.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus
           lugdunensis M23590]
 gi|315496839|gb|EFU85162.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus
           lugdunensis M23590]
          Length = 1057

 Score = 83.6 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 51/297 (17%), Positives = 113/297 (38%), Gaps = 36/297 (12%)

Query: 25  ALEDAGFKVSQID---------------------VDRSVGLVLAHLKPDLAFNVLHGNFG 63
           AL++ G++V  ++                         +  ++   +PD     L G  G
Sbjct: 36  ALKEEGYRVILVNSNPATIMTDKEIADKVYIEPLTHDFIARIIRKEQPDALLPTLGGQTG 95

Query: 64  EDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
            +  +Q     +LE   +    + + +   + D+   + +++   VPV  S +VN     
Sbjct: 96  LNMAIQLHESGVLEANNVKLLGTELKSIQQAEDRELFRTLMNDLDVPVPESDIVNTVEQA 155

Query: 120 S--QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IE 176
              +  +  P +++P       G  +   D+ +   +     ++   Q LIE+ + G  E
Sbjct: 156 FSFKEQVGYPLIVRPAFTMGGTGGGICHNDEELKEVVSNGLHYSPATQCLIEKSIAGFKE 215

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAH 235
           +   VM D + +   I V   +     +   + +S  V P++ +    Y+ ++ ++    
Sbjct: 216 IEYEVMRDKNDNA--IVVCNMENID-PVGIHTGDSIVVAPSQTLSDVEYQMLRDVSLKVI 272

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +A+G  G        DP S   + +E+N  P ++  S     +   GY   +L   +
Sbjct: 273 RALGIEGGCNVQLALDPHSFNYYIIEVN--PRVSRSS--ALASKATGYPIAKLAAKI 325



 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 24/192 (12%), Positives = 67/192 (34%), Gaps = 9/192 (4%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPL 133
            +    + +     + D+   + ++    VP          +  +++   I  P V++P 
Sbjct: 650 GVQILGTSLEDLNRAEDRKEFEALLRDIHVPQPKGKTATSPQEALNNAREIGYPVVVRPS 709

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
                  + ++  DQ +   + Q+   +    +L+++Y+ G E+    + D    +    
Sbjct: 710 YVLGGRAMEIVDNDQELENYMEQAVKASPEHPVLVDRYLTGKEIEVDAISDGDTVIIPGI 769

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
           +   +           +S  V P + +  +    ++       + +   G+    F+   
Sbjct: 770 MEHIERAGVHS----GDSIAVYPPQTLSQEELDTLEDYTIKLAKGLNIVGLINIQFVIAH 825

Query: 253 LSRKVFWLEINV 264
               V+ LE+N 
Sbjct: 826 DG--VYVLEVNP 835


>gi|161343819|gb|ABI95362.2| pyruvate carboxylase-like protein [Rhizobium sp. TAL1145]
          Length = 1153

 Score = 83.6 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 79/221 (35%), Gaps = 18/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-L 112
            +H  +G   E        +   I +            +K+ ++ +  S GVPV P+   
Sbjct: 85  AIHPGYGLLSESPEFVDACDAAGITFIGPRPATMRQLGNKVAARNLAISVGVPVVPATDP 144

Query: 113 VNRFTMDSQHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSWNHGDQ 165
           +     +   L   I  P ++K   GG   G+  I+  + +         ++ +    D+
Sbjct: 145 LPEDEKEIHRLAAEIGYPVMLKASWGGGGRGMRAIRDPKDLIREVTEAKREAKAAFGKDE 204

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           + +E+ V+    +   ++GD   +V  +            K          PA  +    
Sbjct: 205 VYLEKLVERARHVESQILGDTHGNVVHLFERDCSIQRRNQK-----VVERAPAPYLSDAQ 259

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +E+   +    +A    G    ++L D  + K +++E+N 
Sbjct: 260 RQELADYSLKIARATNYVGAGTVEYLMDADTGKFYFIEVNP 300


>gi|29831820|ref|NP_826454.1| acetyl/propionyl CoA carboxylase alpha subunit [Streptomyces
           avermitilis MA-4680]
 gi|29608937|dbj|BAC72989.1| putative acetyl/propionyl CoA carboxylase alpha subunit
           [Streptomyces avermitilis MA-4680]
          Length = 700

 Score = 83.6 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 85/221 (38%), Gaps = 17/221 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---- 109
            +H  +G   E+           + +      A +L  DK+R+K+ V + GVPV P    
Sbjct: 77  AVHPGYGFLAENAGFARACADAGLVFIGPPADAISLMGDKIRAKETVQAVGVPVVPGSSG 136

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
           S L +   +D+   I  P ++KP  GG   G+ +++ ++ +  ++  +          D 
Sbjct: 137 SGLTDAQLVDAAREIGMPVLLKPSAGGGGKGMRLVRDERLLADEIAAARREARASFGDDT 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           LL+E++VD    +   V+ D   +V  +   +        K             +     
Sbjct: 197 LLVERWVDRPRHIEIQVLADGHGNVVHLGERECSLQRRHQK----VIEEAPSVLLDEATR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLS-RKVFWLEINV 264
             +   A  A ++ G  G    +F+         +++E+N 
Sbjct: 253 AAMGEAAVQAARSCGYEGAGTVEFIVPGGDPSSYYFMEMNT 293


>gi|85373447|ref|YP_457509.1| AccC, acetyl-CoA carboxylase, biotin carboxylase [Erythrobacter
           litoralis HTCC2594]
 gi|84786530|gb|ABC62712.1| AccC, acetyl-CoA carboxylase, biotin carboxylase [Erythrobacter
           litoralis HTCC2594]
          Length = 449

 Score = 83.6 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 72/220 (32%), Gaps = 18/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     I+E  +I +            DK+ +KQ     G+P+ P    
Sbjct: 78  AIHPGYGFLSENAKFAEIVEAHDIKWIGPKPEHIRTMGDKVAAKQTAGELGLPLVPGSEG 137

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSWNHGDQ 165
            +            I  P +IK   GG   G+ V    + +         ++ +      
Sbjct: 138 AVSDYDEARKIAAEIGYPVIIKAASGGGGRGMKVCDSAEKLEGLMKQAGSEAKAAFGDAT 197

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+Y+ +   +   V GD +     +            K             +     
Sbjct: 198 VYIEKYLGNPRHIEFQVFGDGNGSAIHLGERDCSLQRRHQKVL----EEAPSPVLDSAER 253

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +  +   A + +  RG    +FL+     + +++E+N 
Sbjct: 254 HRMGEICADAMRKMAYRGAGTIEFLW--EGGEFYFIEMNT 291


>gi|295396982|ref|ZP_06807101.1| carbamoyl-phosphate synthase, large subunit [Aerococcus viridans
           ATCC 11563]
 gi|294974782|gb|EFG50490.1| carbamoyl-phosphate synthase, large subunit [Aerococcus viridans
           ATCC 11563]
          Length = 1059

 Score = 83.6 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 50/268 (18%), Positives = 98/268 (36%), Gaps = 30/268 (11%)

Query: 25  ALEDAGFKVSQID---------------------VDRSVGLVLAHLKPDLAFNVLHGNFG 63
           AL++ G++V  I+                      +  V  +L   KPD     L G  G
Sbjct: 36  ALKEEGYEVVLINSNPATIMTDRKMADKIYIEPITEEMVSKILYEEKPDAILPSLGGQTG 95

Query: 64  EDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFT 117
            +  +      ILE L+I    + + A   + D+   K +++S G PV  S +V+     
Sbjct: 96  LNMALTLDASGILEELDIELIGTNLKAIDQAEDRELFKNLMTSIGQPVPDSTIVHTVDEA 155

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IE 176
           +D  + I  P +++P       G  + +   S+   +      +   Q LIE+ + G  E
Sbjct: 156 VDFANEIGYPIIVRPAFTMGGSGGGICEDQASLEKIVKNGLILSPVTQCLIEKSIAGYQE 215

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +   VM D +     I     + +     ++  +        +       +  +A    Q
Sbjct: 216 IEYEVMRDGAGVAKVIT--SMENFDPVGVHTGDSIVFAPNQSLDQAQNDMLADVAIKIIQ 273

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINV 264
           A+   G         P +++ + +E+N 
Sbjct: 274 ALEIEGGCNVQLALKPDTQEYYIIEVNP 301



 Score = 63.2 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 32/201 (15%), Positives = 75/201 (37%), Gaps = 14/201 (6%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS---ILVNRFTMDSQHLISPPY 128
           L+   I    + +     + D+   +Q ++   +        + +       + +   P 
Sbjct: 648 LKEAGIQILGTSVEDMNRAEDRKLFEQALTQLNIAQPEGDTALSLEEALAIPEKIGGYPV 707

Query: 129 VIKPLKGGSSLGIIVIKKDQSIPL----DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
           +++P       G+ V+  ++++       L +S        +LI+ YV GIE+    + D
Sbjct: 708 LVRPSFVLGGRGMEVVYDEENLTTYMNDALAESHKLKQEAPILIDHYVQGIEVEVDAICD 767

Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGI 243
                T++ +P    +       S +S  V P  ++   +  ++          +G  G+
Sbjct: 768 G----TDVFIPGIMEHIEAAGVHSGDSMAVFPTQRLSQAVIDQIIDETIKIGNGLGTIGM 823

Query: 244 SRSDFLFDPLSRKVFWLEINV 264
               F+    + KVF +E+N 
Sbjct: 824 VNIQFIV--ENDKVFIIEVNP 842


>gi|237736356|ref|ZP_04566837.1| biotin carboxylase [Fusobacterium mortiferum ATCC 9817]
 gi|229421398|gb|EEO36445.1| biotin carboxylase [Fusobacterium mortiferum ATCC 9817]
          Length = 448

 Score = 83.6 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 77/220 (35%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+    +I E   I +            DK  ++    +  VP+      
Sbjct: 77  AIHPGYGFLSENAKFASICEEHNITFIGPRPECITKMGDKATARATAIANNVPLTNGTGI 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSWNHGDQ 165
              ++    +    I+ P +IK   GG   G+ + + D+ +         ++ +      
Sbjct: 137 VRSISEAKKEVNERITYPVMIKATAGGGGKGMRIARNDEELEMNIVAAQTEAGAAFGNPD 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE++V+    +   ++GD   +V  +            K             +P ++ 
Sbjct: 197 VYIEKFVENPRHIEIQILGDKYGNVIYLGERDCSIQRRHQK----LIEEAPSFSLPYEVR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K +   A    +AI        +FL D    K +++E+N 
Sbjct: 253 KAMGEAAVTLAKAINYDSAGTLEFLVDK-DNKFYFMEMNT 291


>gi|161485671|ref|NP_633852.2| pyruvate carboxylase subunit A [Methanosarcina mazei Go1]
          Length = 493

 Score = 83.6 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 83/221 (37%), Gaps = 20/221 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+       E   I +        A    K+R++ ++   GVPV P    
Sbjct: 77  AIHPGYGFLSENPAFAKRCEEEGIIFIGPPSNVIAEMGSKIRARHLMMKAGVPVVPGTKD 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGD 164
            +      M+    I  P +IK   GG  +G+ V+   + +   L     +  S++    
Sbjct: 137 AVEDPEEAMEIAEKIGYPVLIKASAGGGGIGMKVVHSREELATSLSSTRQMAGSAFG-DS 195

Query: 165 QLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            + IE+YV+    +   ++ D+  ++  ++  +        K             +  ++
Sbjct: 196 SVFIEKYVEEPRHIEIQILADSHGNMVYLSDRECSIQRRHQK----LIEEAPSPIMTPEL 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            K++   A    +AIG       +FL+       ++LE+N 
Sbjct: 252 RKQMGEAAVKVAKAIGYVNAGTVEFLYSK--GNFYFLEVNT 290


>gi|163732148|ref|ZP_02139594.1| pyruvate carboxylase [Roseobacter litoralis Och 149]
 gi|161394446|gb|EDQ18769.1| pyruvate carboxylase [Roseobacter litoralis Och 149]
          Length = 1146

 Score = 83.6 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 81/221 (36%), Gaps = 18/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       +   I +            DK  +++V    GVPV P+  V
Sbjct: 80  AIHPGYGLLSENPDFVDACDQNGIVFIGPRAETMRALGDKASARRVAVEAGVPVIPATEV 139

Query: 114 NRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-----SSSWNHGD 164
               M +       +  P ++K   GG   G+  I+++  +   +L+      +++ +G+
Sbjct: 140 LGDDMKAIKAEAKQVGYPLMLKASWGGGGRGMRPIQQEDELEEKVLEGRREAEAAFGNGE 199

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
             L +  +    +   ++GD   D+              ++  +       PA  +    
Sbjct: 200 GYLEKMILRARHVEVQILGDKHGDMY-----HLFERDCSVQRRNQKVVERAPAPYLTEAQ 254

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             EV +L +   + +        +FL D    K +++E+N 
Sbjct: 255 RAEVCKLGYDICKHVNYECAGTVEFLMDMDDGKFYFIEVNP 295


>gi|156836922|ref|XP_001642500.1| hypothetical protein Kpol_299p2 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156113037|gb|EDO14642.1| hypothetical protein Kpol_299p2 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 1832

 Score = 83.6 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 33/253 (13%), Positives = 84/253 (33%), Gaps = 31/253 (12%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
           +G   E+       +   I +             K  ++++  +  VP+ P   +     
Sbjct: 710 YGFLSENAEFSDTCKENGITFIGPSGQVIRDLGLKHSARELAKNANVPLVPGSSLISNVQ 769

Query: 119 DSQHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQLLIEQY 171
           + + +   +  P +IK   GG  +G+  ++ ++ I            ++     + +E++
Sbjct: 770 EVKEVAQALGYPVMIKSTAGGGGIGLQKVENEEQIESMFATVKHLGETYFGNSGVFLEKF 829

Query: 172 VD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
           ++    +   ++GD       I            K          P  +P     +++  
Sbjct: 830 IENARHVEVQILGDGKGKAIAIGERDCSLQRRNQKII----EETPPPNLPESTLIKMRNA 885

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY------AGYS 284
           A          G    ++++D    + ++LE+N +              +       G  
Sbjct: 886 AESLGALTKYLGAGTVEYIYDQDRDEFYFLEVNTR----------LQVEHPITEVVTGL- 934

Query: 285 FRELLLWMVEDAS 297
             +L+ WMV+ A+
Sbjct: 935 --DLVEWMVKLAA 945


>gi|51574082|gb|AAU07975.1| VanB [Enterococcus faecium]
          Length = 121

 Score = 83.6 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 22/110 (20%), Positives = 51/110 (46%), Gaps = 6/110 (5%)

Query: 99  VVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS 158
           +  + G+ V    ++++        ++ P  +KP + GSS G+  +   + +   +   +
Sbjct: 3   LTKNAGIAVPEFQMIDKGDKPEAGALTYPVFVKPARSGSSFGLTKVNGTEELNAAI--EA 60

Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSYEL 204
           +  +  ++LIEQ + G E+ C VMG+       +V +I +    F  ++ 
Sbjct: 61  AGQYDGKILIEQAISGCEVGCAVMGNEDDLIVGEVDQIRLSHGIFRIHQE 110


>gi|169831463|ref|YP_001717445.1| carbamoyl-phosphate synthase, large subunit [Candidatus
           Desulforudis audaxviator MP104C]
 gi|226700927|sp|B1I4M8|CARB_DESAP RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|169638307|gb|ACA59813.1| carbamoyl-phosphate synthase, large subunit [Candidatus
           Desulforudis audaxviator MP104C]
          Length = 1082

 Score = 83.6 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 52/295 (17%), Positives = 106/295 (35%), Gaps = 42/295 (14%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAI---- 71
           AL++ G K   I         D D +  L    L P+   N+LH     DG++       
Sbjct: 595 ALKEQGVKAIIINNNPETVSTDFDTADRLYFEPLVPEDVMNILH-KEKPDGVIVQFGGQT 653

Query: 72  -------LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS---ILVNRFTMDSQ 121
                  +E        + +     + D+ R  Q+V+  G+P  P      V      ++
Sbjct: 654 AINLARPVEKAGFNILGTSVADIDRAEDRERFDQLVAELGIPRPPGGTGFSVEEAQRIAE 713

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
             +  P +++P        + ++   Q +   +  +        +L+++Y+ G EL    
Sbjct: 714 Q-VGFPVLVRPSYVLGGRAMEIVYNSQELLEYMADAVRVTPKHPVLVDKYLLGKELEVDA 772

Query: 182 MGDAS---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQA 237
           + D     +      V ++  +S        +S  V P + +  +I +++        +A
Sbjct: 773 VCDGETVLVPGIMEHVERAGIHS-------GDSIAVFPPQTLTPEIKEQLFEYTQQIARA 825

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +  RG+    F+      +VF LE+N +   T     P ++   G     L   +
Sbjct: 826 LKIRGLVNIQFVLHE--GRVFVLEVNPRSSRT----VPYLSKVTGIPMVNLATRI 874



 Score = 76.7 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 55/288 (19%), Positives = 106/288 (36%), Gaps = 37/288 (12%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI---------DVD------------RSVGLV 45
           G ++E + +   G     AL + G +V  I         D +              V  V
Sbjct: 21  GQAAEFDYA---GTQACRALREEGLEVVLINSNPATIMTDANMADRIYIEPLTPEFVAKV 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           ++  +PD     L G  G +   Q     IL+   +    + + +   + D+   K +  
Sbjct: 78  ISQERPDALLPTLGGQTGLNLAKQVADAGILDQYGVRLLGTPLESIKRAEDREHFKNMCL 137

Query: 102 SCGVPVCPSILVNRFTMD--SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G PV  S +++           I  P V++P       G  V   +  +    ++  +
Sbjct: 138 EIGEPVPESSIISDVDAAVAFARKIGYPVVVRPAYTLGGTGGGVAFSEDELREIAVRGLT 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEI-AVPKSDFYSYELKYSSLNSTHVLPA 217
            +   Q+L+E+ V G  E+   VM DA+ +   I ++   D           +S  V P 
Sbjct: 198 MSIIHQVLVEKCVLGWKEIEYEVMRDAAGNCITICSMENIDPMGIHT----GDSIVVAPT 253

Query: 218 K-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +    ++ ++  +    +A+G  G     F  DP S   + +E+N 
Sbjct: 254 QTLSDREHQMLRSASLKIIRALGVEGGCNVQFALDPESYDYYVIEVNP 301


>gi|326803444|ref|YP_004321262.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Aerococcus
           urinae ACS-120-V-Col10a]
 gi|326650380|gb|AEA00563.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Aerococcus
           urinae ACS-120-V-Col10a]
          Length = 467

 Score = 83.6 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 33/220 (15%), Positives = 73/220 (33%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---- 109
            +H  FG   E+     + + + I +            DK  ++Q + +  VPV P    
Sbjct: 77  AIHPGFGFLSENSKFARLCQEMNITFIGPSAQVIDKMGDKQHARQTMMAANVPVIPGSKD 136

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
            I      +     +  P ++K   GG   G+  +   + +     ++S          +
Sbjct: 137 FIHSASEGLAEADRVGYPVLLKATSGGGGKGMRQVDCPEDLQKQFDEASREAQQGFNDAR 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           L +E+ +     +   ++ D +  V  +   +        K             I     
Sbjct: 197 LYLEKVIHPAHHIEVQILADQNGHVIHLGERECSLQRNHQKVL----EETPSPFISDKTR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + + + A  A + +   G    +FL D      +++E+N 
Sbjct: 253 QAICQAAVRAGENVQYTGAGTIEFLVDDDEN-FYFMEMNT 291


>gi|258645189|ref|ZP_05732658.1| carbamoyl-phosphate synthase, large subunit [Dialister invisus DSM
           15470]
 gi|260402538|gb|EEW96085.1| carbamoyl-phosphate synthase, large subunit [Dialister invisus DSM
           15470]
          Length = 1067

 Score = 83.6 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 39/228 (17%), Positives = 86/228 (37%), Gaps = 26/228 (11%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPL 133
            I    S   +  ++ D+ R   ++   G+      LV      M+    +  P +++P 
Sbjct: 649 GIRIIGSSNESIDMAEDRERFDTLMGQLGIARPKGCLVESVEEAMEKTQDLDYPLIVRPS 708

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA---SLDVT 190
                  + ++     +   L ++   +H   +LI+QY+ G E+    + D     +   
Sbjct: 709 YVLGGRAMQIVYDQAELRQYLKEAVVASHEHPVLIDQYMVGREVEVDAISDGIDVCIPGI 768

Query: 191 EIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
              + +S  +S        +S  V P + +  +  + +        +A+  +G+    F+
Sbjct: 769 MEQIERSGVHS-------GDSIAVYPPQHLTQETIETLTDYTRKIARAMNVKGLINIQFI 821

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
              +  KV+ +E+N +   T     P M+   G +       MVE A+
Sbjct: 822 V--VGNKVYVIEVNPRASRT----VPFMSKITGIN-------MVEHAT 856



 Score = 63.2 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 50/288 (17%), Positives = 103/288 (35%), Gaps = 37/288 (12%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI---------DVD------------RSVGLV 45
           G ++E + +   G     +L++ G +V  +         DVD              V  V
Sbjct: 20  GQAAEFDYA---GTQACRSLKEEGIEVVLVNSNPSTIMTDVDIADRVYIEPITLPFVTEV 76

Query: 46  LAHLKPDLAFNVLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   +PD     L G  G +  V      +LE   +    S + A   + D+   K+ ++
Sbjct: 77  IKKERPDALLATLGGQVGLNMAVDLSEAGVLEKYGVELLGSSLHAIKHAEDRELFKRAMN 136

Query: 102 SCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
               PV  S + +     +     I  P +I+P       G  +      +     +   
Sbjct: 137 EIHQPVPESGIFDELEPAVTFADKIGYPVIIRPAYTLGGTGGGIAHDRYEMEEISNRGIK 196

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
            +  +Q+L+E+ V G  E+   VM D++ + +   A+   D           +S  V P 
Sbjct: 197 LSPINQILVERSVAGWKEVEFEVMRDSADNCIIVCAMENIDPVGVHT----GDSIVVAPT 252

Query: 218 K-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +    Y+ ++  +    + +   G     +  D  +   + +E+N 
Sbjct: 253 QTLTDGQYQMLRTASLDIIRYLQIEGGCNVQYALDTKTNNYYVIEVNP 300


>gi|114566070|ref|YP_753224.1| pyruvate carboxylase [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
 gi|114337005|gb|ABI67853.1| pyruvate carboxylase, PYKA [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
          Length = 1144

 Score = 83.6 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 80/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+           I +            DK++SK +  S GVP  P +  
Sbjct: 80  AIHPGYGFLAENPEFAQKCIESGIEFIGPTPEMMDKLGDKIKSKLIAQSIGVPTIPGVEK 139

Query: 114 ----NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS-----SSWNHGD 164
               ++  +        P ++K   GG   G+ +++ +  +  +   +      ++   D
Sbjct: 140 AIKSDQEAIKFAQKCGYPIMLKASAGGGGRGMRIVRNETDLLQEFHSAKNEAQKAFGIDD 199

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLD 222
            + IE+Y++    +   V+GD   ++  +            K          PA KI  +
Sbjct: 200 -IFIEKYLESPKHIEVQVLGDNYGNIVYLYERDCSIQRRHQK-----VIEFAPAFKISAE 253

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             K +   A    +++  R     +FL D      +++E+N 
Sbjct: 254 QRKAICADALKIARSVNYRNAGTVEFLLDKQGNH-YFIEMNP 294


>gi|67923410|ref|ZP_00516889.1| Acetyl-CoA carboxylase, biotin carboxylase [Crocosphaera watsonii
           WH 8501]
 gi|67854745|gb|EAM50025.1| Acetyl-CoA carboxylase, biotin carboxylase [Crocosphaera watsonii
           WH 8501]
          Length = 452

 Score = 83.6 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 81/221 (36%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     I    +I +      +     DK  +K+ +   GVP  P    
Sbjct: 79  AIHPGYGFLAENARFAEICADHQIVFIGPSPESIRSMGDKSTAKKTMQKAGVPTVPGSWG 138

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI-----PLDLLQSSSWNHGD 164
            +      ++    I  P +IK   GG   G+ +++++               +++ +G 
Sbjct: 139 LLQSEEEALNVARDIGYPVMIKATAGGGGRGMRLVREESEFSRLFQAAQGEAEAAFGNGG 198

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            + +E++++    +   ++ D+  +V  +            K             +   +
Sbjct: 199 -VYLEKFIERPRHIEFQILADSHGNVIHLGERDCSIQRRHQKLL----EEAPSPVLTPQL 253

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            K++   A  A ++I   G    +FL D    K +++E+N 
Sbjct: 254 RKKMGEAAVKAAKSIKYVGAGTVEFLVDNQ-GKFYFMEMNT 293


>gi|332296402|ref|YP_004438325.1| Pyruvate carboxylase [Thermodesulfobium narugense DSM 14796]
 gi|332179505|gb|AEE15194.1| Pyruvate carboxylase [Thermodesulfobium narugense DSM 14796]
          Length = 485

 Score = 83.6 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 39/223 (17%), Positives = 86/223 (38%), Gaps = 19/223 (8%)

Query: 56  NVLHGNFG---EDGLV-QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           N +H  +G   E+ +  Q +++   + +            DK+ +K+      VPV P I
Sbjct: 79  NAVHPGWGFLSENHIFAQRVIDS-GLIWIGPKPEVIKAMGDKIEAKKWAKRANVPVIPGI 137

Query: 112 -----LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNH 162
                         +  IS P ++K   GG   G++ +++ + I         ++     
Sbjct: 138 DNAKSYEEIIDWMKEEDISFPILVKASAGGGGKGMLKVERAEDIQNAFTQVKSEALKSFG 197

Query: 163 GDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL 221
            D++L+E+Y++ G  +   ++ D    +  +   +        K             +  
Sbjct: 198 DDKVLVEKYIERGRHIEVQIIADEYGSICHLFERECTIQRRNQKII----EETPSPSLDD 253

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +E+   A    + IG       +FL+D  ++K ++LE+N 
Sbjct: 254 TLRQEICFTAVRFMREIGYTSAGTVEFLYDSNTKKFYFLEVNT 296


>gi|312864219|ref|ZP_07724453.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Streptococcus
           vestibularis F0396]
 gi|322517364|ref|ZP_08070239.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus
           vestibularis ATCC 49124]
 gi|311100220|gb|EFQ58429.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Streptococcus
           vestibularis F0396]
 gi|322124061|gb|EFX95614.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus
           vestibularis ATCC 49124]
          Length = 456

 Score = 83.6 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 76/220 (34%), Gaps = 16/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  FG   E+     + E + I +            DK+ ++  +    VPV P    
Sbjct: 77  AIHPGFGFLSENSKFSTLCEEMNIKFIGPSGKVMDKMGDKINARAEMIRANVPVIPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
            +      ++    +  P ++K   GG   GI  +  ++ +         ++ +      
Sbjct: 137 EVFTAEEALEVAKRLGYPVMLKASAGGGGKGIRKVNTEEELAPAFESASQEAKAAFGNGA 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+ +     +   ++GD+  ++  +            K             I   + 
Sbjct: 197 MYIEKVIYPARHIEVQILGDSYGNIVHLGERDCSLQRNNQKVL----EESPSVAIGKTLR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            E+   A  A +A+        +FL D  S + +++E+N 
Sbjct: 253 HEIGSAAVRAAKAVNYENAGTIEFLLDEKSGQFYFMEMNT 292


>gi|261362648|gb|ACX71633.1| biotin carboxylase [Muriella zofingiensis]
 gi|261362650|gb|ACX71634.1| biotin carboxylase [Muriella zofingiensis]
          Length = 490

 Score = 83.6 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 79/220 (35%), Gaps = 18/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-SIL 112
            +H  +G   E+     I     + +         +  DK  ++  +   GVP  P S  
Sbjct: 110 AIHPGYGFLSENADFVDICIDHGLEFIGPKSAQIRMMGDKSTARDTMKKAGVPTVPGSEG 169

Query: 113 VNRFTMDS---QHLISPPYVIKPLKGGSSLGIIVIKKDQS----IPLDLLQSSSWNHGDQ 165
           + R   ++      I  P +IK   GG   G+ +  K +     +     ++ +      
Sbjct: 170 LIRDDEEANAVAKTIGFPLMIKATAGGGGRGMRLATKQEDFLTMLKQAQQEAEAAFGNGA 229

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+YV +   +   V+ D   +V  +            K             +  ++ 
Sbjct: 230 VYIERYVQNPRHIEFQVLADKYGNVVHLGERDCSIQRRNQKLL----EEAPSPALTPEVR 285

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K +   A  A +AIG  G+   +FL++      +++E+N 
Sbjct: 286 KAMGDAAVNAARAIGYVGVGTIEFLWEEKG--FYFMEMNT 323


>gi|260551649|ref|ZP_05825723.1| biotin carboxylase [Acinetobacter sp. RUH2624]
 gi|260405392|gb|EEW98886.1| biotin carboxylase [Acinetobacter sp. RUH2624]
          Length = 456

 Score = 83.6 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 79/220 (35%), Gaps = 19/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     I+E     +         L  +K+ +   +   GVP  P    
Sbjct: 77  AIHPGYGFLSENAEFAEIVESSGFTFIGPRPEHIRLMGNKVSAIVAMKKAGVPTVPGCDH 136

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD----QSIPLDLLQSSSWNHGDQL 166
            +     +     I  P ++K   GG   G+ ++++     +S+      +  W   D +
Sbjct: 137 AVTIHNALAEAKEIGFPLIVKAAAGGGGRGMRIVERVDTLLESVQAAQRDAEMWFGDDTV 196

Query: 167 LIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIY 224
            +E+++     +   V+GD +     +           L+          PA  +P    
Sbjct: 197 YMERFLQKPRHVEVQVLGDGNGHAIHLY-----DRDCSLQRRHQKVLEEAPAPNLPEQAR 251

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            ++ +    A Q +  RG    +FLF     + F++E+N 
Sbjct: 252 ADILQACVNACQLMQYRGAGTFEFLF--EDGEFFFIEMNT 289


>gi|154149224|ref|YP_001406712.1| biotin carboxylase (Acetyl-CoA carboxylase subunit A) (ACC)
           [Campylobacter hominis ATCC BAA-381]
 gi|153805233|gb|ABS52240.1| biotin carboxylase (Acetyl-CoA carboxylase subunit A) (ACC)
           [Campylobacter hominis ATCC BAA-381]
          Length = 337

 Score = 83.6 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 37/189 (19%), Positives = 77/189 (40%), Gaps = 13/189 (6%)

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPS---ILVN-RFTMDSQHLISPPYVIKPLKGGSSLG 140
           ++ AL  DK ++K  +   GVPV P    +L +        + +  P ++K   GG   G
Sbjct: 1   MSMALMSDKSKAKSFMKRAGVPVIPGSDGVLKDVEEARKLANEMGYPVILKAAAGGGGRG 60

Query: 141 IIVIKKDQSIP----LDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVP 195
           + ++ K + +         ++ S      + IE+Y+     +   ++GD   +V  +   
Sbjct: 61  MRLVTKGEDLEKNFWAAESEALSAFGNGSMYIEKYITNPRHVEVQILGDEHGNVIHVGER 120

Query: 196 KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255
                    K        +    +     +++   A  A +AIG  G    +FL+D  S+
Sbjct: 121 DCSMQRRHQKLIEETPATI----LDEKTREKLHETAIAATKAIGYYGAGTFEFLYDQDSK 176

Query: 256 KVFWLEINV 264
           + +++E+N 
Sbjct: 177 EFYFIEMNT 185


>gi|332308284|ref|YP_004436135.1| Carbamoyl-phosphate synthase L chain ATP-binding protein
           [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332175613|gb|AEE24867.1| Carbamoyl-phosphate synthase L chain ATP-binding protein
           [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 683

 Score = 83.6 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 75/220 (34%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+           I +      A  L   K  SK  +   GVP  P    
Sbjct: 105 AIHPGYGFLSENPAFARACAAAGIQFIGPDASAIELMGSKRLSKVAMLDAGVPCIPGYQG 164

Query: 112 --LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS-----SSWNHGD 164
               ++  ++    +  P ++K   GG   G+ ++ +   +   +  +     S++  G+
Sbjct: 165 AEQSDQVLIEKAADVGFPIMVKASAGGGGRGMRLVTEQGELAAQIKTARSEALSAFGSGE 224

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
            +L    +    +   +  D+  +   +            K             +   + 
Sbjct: 225 LILERAVLAPRHIEIQIFADSQGNTVYLGERDCSIQRRHQK----VVEEAPSPFVDEGLR 280

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + + + A  A +A G RG    +FL D   +  ++LE+N 
Sbjct: 281 ERMGQAAVSAAKACGYRGAGTVEFLVD-SDKNFYFLEMNT 319


>gi|254461232|ref|ZP_05074648.1| methylcrotonyl-CoA carboxylase, alpha subunit [Rhodobacterales
           bacterium HTCC2083]
 gi|206677821|gb|EDZ42308.1| methylcrotonyl-CoA carboxylase, alpha subunit [Rhodobacteraceae
           bacterium HTCC2083]
          Length = 648

 Score = 83.6 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 78/225 (34%), Gaps = 23/225 (10%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      +E   + +     +A      K  +K ++   GVPV P    
Sbjct: 77  AIHPGYGFLSENPDFVEQVEAAGLTFIGPSSVAIRAMGLKDAAKVLMEKAGVPVVPGYHG 136

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
                D        I  P +IK + GG   G+ +++  Q     L     ++ +      
Sbjct: 137 ADQNDDLLAREAEKIGYPVLIKAVAGGGGKGMRLVETPQEFADALDSARSEAKAAFGNSD 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           +L+E++V     +   V GD    V              L+          PA  +   +
Sbjct: 197 VLVEKFVTKPRHIEVQVFGDGETAV------HLFERDCSLQRRHQKVIEEAPAPGMTDAV 250

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR----KVFWLEINV 264
            + +   A  A +AIG  G    +F+ D          +++E+N 
Sbjct: 251 RRAMGDAAVRAAEAIGYAGAGTIEFIVDGSDGLREDGFWFMEMNT 295


>gi|255570773|ref|XP_002526339.1| ATP binding protein, putative [Ricinus communis]
 gi|223534298|gb|EEF36010.1| ATP binding protein, putative [Ricinus communis]
          Length = 1197

 Score = 83.6 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 52/280 (18%), Positives = 102/280 (36%), Gaps = 38/280 (13%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G+ V  I         D D              V  V+   +PD    
Sbjct: 122 SGTQACKALKEEGYDVILINSNPATIMTDPDLADRTYIAPMTPELVEQVIEKERPDALLP 181

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G    +  V    +  L+   +    + + A   + D+   KQ + + G+   PS  
Sbjct: 182 TMGGQTALNLAVALAERGTLDKYNVELIGAKLDAIKKAEDRDLFKQAMKNIGLKTPPSGI 241

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
              ++     +  +   P +I+P       G  +    +          + +   Q+L+E
Sbjct: 242 GTTIDECFQIANDIGEFPLIIRPAFTLGGTGGGIAYNIEEFEGICKGGLAESLTSQVLVE 301

Query: 170 QYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKE 226
           + + G  E    VM D + +V  I   ++    ++       +S  V PA+ +    Y+ 
Sbjct: 302 KSLLGWKEYELEVMRDLADNVVIICSIEN----FDPMGVHTGDSITVAPAQTLTDKEYQR 357

Query: 227 VQRLAFLAHQAIG--CRGISRSDFLFDPLSRKVFWLEINV 264
           ++  +    + IG  C G S   F  +P+  +V  +E+N 
Sbjct: 358 LRDYSIKIIREIGVECGG-SNVQFAVNPVDGEVMIIEMNP 396



 Score = 52.4 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 29/188 (15%), Positives = 70/188 (37%), Gaps = 8/188 (4%)

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTMDSQHLISPPYVIKPLKGGSS 138
            +   +   + D+ R   +V    +      +       +     I  P V++P      
Sbjct: 768 GTSPDSIDAAEDRERFNAIVKELQIEQPKGGIAKTEADALTIAKDIGYPVVVRPSYVLGG 827

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKS 197
             + ++  D+ +   L  +   +    +LI++Y+ D +E+    + D+  +V    V + 
Sbjct: 828 RAMEIVYSDEKLVTYLENAVKVDPDRPVLIDKYLSDAVEIDVDALADSHGNVVIGGVME- 886

Query: 198 DFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256
             +  +    S +S  +LP + I       ++       +++   G+    +    L+ +
Sbjct: 887 --HIEQAGVHSGDSACILPTQTISSSCLDTIRSWTMKLAKSLKVCGLMNCQYAIT-LAGE 943

Query: 257 VFWLEINV 264
           VF LE N 
Sbjct: 944 VFLLEANP 951


>gi|20906351|gb|AAM31524.1| Pyruvate carboxylase, subunit A [Methanosarcina mazei Go1]
          Length = 497

 Score = 83.6 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 83/221 (37%), Gaps = 20/221 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+       E   I +        A    K+R++ ++   GVPV P    
Sbjct: 81  AIHPGYGFLSENPAFAKRCEEEGIIFIGPPSNVIAEMGSKIRARHLMMKAGVPVVPGTKD 140

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGD 164
            +      M+    I  P +IK   GG  +G+ V+   + +   L     +  S++    
Sbjct: 141 AVEDPEEAMEIAEKIGYPVLIKASAGGGGIGMKVVHSREELATSLSSTRQMAGSAFG-DS 199

Query: 165 QLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            + IE+YV+    +   ++ D+  ++  ++  +        K             +  ++
Sbjct: 200 SVFIEKYVEEPRHIEIQILADSHGNMVYLSDRECSIQRRHQK----LIEEAPSPIMTPEL 255

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            K++   A    +AIG       +FL+       ++LE+N 
Sbjct: 256 RKQMGEAAVKVAKAIGYVNAGTVEFLYSK--GNFYFLEVNT 294


>gi|152964501|ref|YP_001360285.1| carbamoyl-phosphate synthase L chain ATP-binding [Kineococcus
           radiotolerans SRS30216]
 gi|151359018|gb|ABS02021.1| Carbamoyl-phosphate synthase L chain ATP-binding [Kineococcus
           radiotolerans SRS30216]
          Length = 575

 Score = 83.6 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 34/216 (15%), Positives = 73/216 (33%), Gaps = 16/216 (7%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN---- 114
           +G   E+      +E   + +            DK+ ++ +    G P+ P         
Sbjct: 81  YGFLSENAGFARAVEAAGLTWIGPTPETIEALGDKVTARAIARDAGAPLAPGSTAPLTGA 140

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQLLIEQ 170
           R   +       P V+K   GG   G+ V +  + +         ++ +     +  +E+
Sbjct: 141 RQAEEFADEFGLPIVVKAAHGGGGRGMRVARTREEVADAFESATREAVAAFGRGECFVEK 200

Query: 171 YVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQ 228
           +++    L   V+GD +  VT +           L+  +       PA  +  +  + + 
Sbjct: 201 FLERPRHLEVQVLGDGAGGVTVV-----GDRDCSLQRRNQKLVEEAPAPGLTDEQRRTIH 255

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             A     A+  RG    +FL       + + E+N 
Sbjct: 256 TAARDICAAVDYRGAGTVEFLL-GADGTLSFCEVNT 290


>gi|268680814|ref|YP_003305245.1| acetyl-CoA carboxylase, biotin carboxylase [Sulfurospirillum
           deleyianum DSM 6946]
 gi|268618845|gb|ACZ13210.1| acetyl-CoA carboxylase, biotin carboxylase [Sulfurospirillum
           deleyianum DSM 6946]
          Length = 443

 Score = 83.6 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 42/224 (18%), Positives = 81/224 (36%), Gaps = 15/224 (6%)

Query: 50  KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC- 108
             D  F   +G   E+     + +   I +    + +  L  DK ++K+V+   GVPV  
Sbjct: 75  GCDAIFPG-YGFLSENQTFVEVCQHHNIKFIGPSVDSMVLMSDKSKAKEVMKKAGVPVIL 133

Query: 109 --PSILVN-RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSWN 161
                L +     +    I  P ++K   GG   G+ V++K + +         ++ S  
Sbjct: 134 GSDGALKDVAQAKELATQIGLPVIVKASAGGGGRGMRVVEKMEDLEKSYLAAESEAISAF 193

Query: 162 HGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
               L +E+Y+     +   V+GD+  +V  I            K             + 
Sbjct: 194 GDGTLYMEKYIKNPRHIEVQVIGDSFGNVVHIGERDCSMQRRHQK----LIEESPAIALD 249

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
                 +  +A  A + IG       +FL D   +  +++E+N 
Sbjct: 250 DKTRTRLHEVAVKATKYIGYENAGTFEFLLDA-DKNFYFMEMNT 292


>gi|221636184|ref|YP_002524060.1| acetyl-CoA carboxylase, biotin carboxylase [Thermomicrobium roseum
           DSM 5159]
 gi|221157858|gb|ACM06976.1| acetyl-CoA carboxylase, biotin carboxylase [Thermomicrobium roseum
           DSM 5159]
          Length = 448

 Score = 83.6 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 37/219 (16%), Positives = 77/219 (35%), Gaps = 16/219 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+           + +      A AL  DK  ++++  S GVP+ P    
Sbjct: 77  AIHPGYGFLAENAQFARACRDAGLVFIGPSPEAIALMGDKAAARKLADSAGVPIVPGTPE 136

Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQL 166
            + +   +     I  P ++K   GG   GI +++    +   L+ ++   H       L
Sbjct: 137 TVGSEEALAFADRIGFPLMVKAAAGGGGRGIRIVRDRAELEQALVIAAQEAHAAFGDGSL 196

Query: 167 LIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
            +E++++    +   V+ D    V  +   +        K             +   +  
Sbjct: 197 YLEKFLERPRHIEVQVLADHHGTVLHLFERECSIQRRRQK----LWEEAPSPALTPGLRA 252

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           ++   A    +A G       +FL D      ++LE+N 
Sbjct: 253 QICEAAVRLARAAGYTNAGTIEFLLDA-GGSFYFLEMNT 290


>gi|134046360|ref|YP_001097845.1| pyruvate carboxylase subunit A [Methanococcus maripaludis C5]
 gi|132663985|gb|ABO35631.1| pyruvate carboxylase subunit A [Methanococcus maripaludis C5]
          Length = 497

 Score = 83.6 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 86/221 (38%), Gaps = 20/221 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+           I +      A  +   K+ +K+ +   GVPV P    
Sbjct: 77  AVHPGYGFLSENVKFAEECNKRGIEFIGPPTNAINVMGSKINAKKAMKIAGVPVLPGREE 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGD 164
            I      ++    I  P +IK   GG  +G+ V+   + +   +     +  S++    
Sbjct: 137 PIESEEGAIEVADEIGYPVIIKASAGGGGIGMNVVYNKEELIDTIQSTKSIAQSAFG-DS 195

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            + IE+Y++    +   V+ D   +V  +   +        K    + + ++      D+
Sbjct: 196 TVFIEKYLEKPRHIEIQVVADKFGNVIHLGDRECSIQRRHQKLIEESPSPIM----TEDL 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +++   A  A +AI    +   +FL+   + + ++LE+N 
Sbjct: 252 REKMGTAAVKAAKAINYHSVGTVEFLY--SNGEFYFLEMNT 290


>gi|70726712|ref|YP_253626.1| carbamoyl phosphate synthase large subunit [Staphylococcus
           haemolyticus JCSC1435]
 gi|82592665|sp|Q4L5Q5|CARB_STAHJ RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|68447436|dbj|BAE05020.1| carbamoyl-phosphate synthase large chain [Staphylococcus
           haemolyticus JCSC1435]
          Length = 1057

 Score = 83.6 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 54/315 (17%), Positives = 120/315 (38%), Gaps = 39/315 (12%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQID---------------------VDRSVGLV 45
           G ++E + +   G     AL++ G++V  ++                         +  +
Sbjct: 21  GQAAEFDYA---GTQACLALKEEGYRVILVNSNPATIMTDKEIADKVYIEPLTHDFIARI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   +PD     L G  G +  +Q     +LE   +    + + +   + D+   + +++
Sbjct: 78  IRKEQPDALLPTLGGQTGLNMAIQLHDSGVLEANNVKLLGTELKSIQQAEDRELFRSLMN 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
              VPV  S +VN        +  +  P +++P       G  +   D+ +   +     
Sbjct: 138 DLNVPVPESDIVNTVEQAFAFKDEVGYPLIVRPAFTMGGTGGGICYNDEELKEVVSNGLH 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
           ++   Q LIE+ + G  E+   VM D + +   I V   +     +   + +S  V P++
Sbjct: 198 YSPATQCLIEKSIAGYKEIEYEVMRDKNDNA--IVVCNMENID-PVGIHTGDSIVVAPSQ 254

Query: 219 -IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
            +    Y+ ++ ++    +A+G  G        DP S   + +E+N  P ++  S     
Sbjct: 255 TLSDVEYQMLRDVSLKVIRALGIEGGCNVQLALDPHSFNYYIIEVN--PRVSRSS--ALA 310

Query: 278 AAYAGYSFRELLLWM 292
           +   GY   +L   +
Sbjct: 311 SKATGYPIAKLAAKI 325



 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 23/192 (11%), Positives = 67/192 (34%), Gaps = 9/192 (4%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPL 133
            +    + +     + D+   + ++ +  VP          +  +++   I  P V++P 
Sbjct: 650 GVKILGTTLENLNRAEDRKEFEALLHTIDVPQPKGKTATSPKEALENAREIGYPVVVRPS 709

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
                  + ++  D  +   + Q+   +    +L+++Y+ G E+    + D    +    
Sbjct: 710 YVLGGRAMEIVNSDAELENYMEQAVKASPEHPVLVDRYLTGKEIEVDAISDGETVIIPGI 769

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
           +   +           +S  V P + +  +    ++       + +   G+    F+   
Sbjct: 770 MEHIERAGVHS----GDSIAVYPPQTLSQEDIDTLEDYTIKLAKGLNIVGLINIQFVIAH 825

Query: 253 LSRKVFWLEINV 264
               V+ LE+N 
Sbjct: 826 DG--VYVLEVNP 835


>gi|289627065|ref|ZP_06460019.1| acetyl-CoA carboxylase biotin carboxylase subunit [Pseudomonas
           syringae pv. aesculi str. NCPPB3681]
 gi|289646280|ref|ZP_06477623.1| acetyl-CoA carboxylase biotin carboxylase subunit [Pseudomonas
           syringae pv. aesculi str. 2250]
 gi|298486968|ref|ZP_07005021.1| Biotin carboxylase of acetyl-CoA carboxylase [Pseudomonas
           savastanoi pv. savastanoi NCPPB 3335]
 gi|298158530|gb|EFH99597.1| Biotin carboxylase of acetyl-CoA carboxylase [Pseudomonas
           savastanoi pv. savastanoi NCPPB 3335]
 gi|330866801|gb|EGH01510.1| acetyl-CoA carboxylase biotin carboxylase subunit [Pseudomonas
           syringae pv. aesculi str. 0893_23]
 gi|330891003|gb|EGH23664.1| acetyl-CoA carboxylase biotin carboxylase subunit [Pseudomonas
           syringae pv. mori str. 301020]
          Length = 450

 Score = 83.6 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 82/221 (37%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+      +E   + +         +  DK+ +K+ +   GVP  P    
Sbjct: 77  AIHPGYGFLSENAAFAERIEQAGLTFIGPSAACIRVMGDKVAAKRAMREAGVPCVPGPDT 136

Query: 111 --ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GD 164
                 +  +     I  P ++K   GG   G+ V++++Q +   +  +S          
Sbjct: 137 SMPADPQGILKIARDIGYPVIVKAAGGGGGRGMRVVQEEQQLLDAIALTSEEARRAFGNP 196

Query: 165 QLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           +L IE+++     +   V+ DA  +   +            K             I  ++
Sbjct: 197 ELYIEKFLGQPRHVEIQVLCDAYGNAVWLGSRDCSMQRRHQKVL----EEAPAPGIDPEL 252

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              V     LA + IG +G+   +FLF   + + +++E+N 
Sbjct: 253 MARVGERCALACRQIGYQGVGTFEFLF--ENDEFYFIEMNT 291


>gi|66820060|ref|XP_643676.1| propionyl-CoA carboxylase [Dictyostelium discoideum AX4]
 gi|60471788|gb|EAL69743.1| propionyl-CoA carboxylase [Dictyostelium discoideum AX4]
          Length = 714

 Score = 83.6 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 87/221 (39%), Gaps = 20/221 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      LE + + +   G  A     DK+ SK++    GV V P  + 
Sbjct: 107 AVHPGYGFLSENSRFVKELENIGVTFIGPGSYAMHALGDKIESKRIAKEAGVSVVPGYIG 166

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
               MD      + I  P ++K   GG   G+ V + D+ + +    S          D+
Sbjct: 167 EVDGMDHVIKIANEIGYPVMVKASAGGGGKGMRVCRNDEDVKIGFRLSKQEAKSSFGDDR 226

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           +LIE+Y++ G  +   V+ D    +              ++  +       P+  +  + 
Sbjct: 227 MLIEKYIEHGRHIEIQVLSDGENALYFPE------RDCSIQRRNQKVIEEAPSPFMDEET 280

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             ++ + A    +A+G +     +FL D   +  ++LE+N 
Sbjct: 281 RTKMGKEAAALCKAVGYKSAGTVEFLVD-HDKSFYFLEMNT 320


>gi|312216071|emb|CBX96023.1| similar to 3-methylcrotonyl-CoA carboxylase subunit alpha
           [Leptosphaeria maculans]
          Length = 787

 Score = 83.6 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 41/219 (18%), Positives = 78/219 (35%), Gaps = 16/219 (7%)

Query: 58  LHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
           +H  +G   E+           I +      A      K  SK +++  GVP  P    +
Sbjct: 170 IHPGYGFLSENPNFARKCTDAGITFIGPPWQAIESMGSKSESKDIMTKAGVPCIPGYHGS 229

Query: 115 RFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQL 166
               D        I  P ++K +KGG   G+ +++ +      L  + S        + +
Sbjct: 230 NQDPDHLKAEALKIGYPVLLKAVKGGGGKGMRIVQNEAEFFDQLASAKSEARNSFGDEVM 289

Query: 167 LIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
           L+E+Y+     +   V  D   +   +            K             +  DI +
Sbjct: 290 LVEKYITTPRHIEVQVFADKHGNCVALGERDCSIQRRHQKIL----EESPAPHLKEDIRQ 345

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           ++   A  A  A+G  G    +F+FD  + + F++E+N 
Sbjct: 346 DIWEKARQAALAVGYEGAGTVEFIFDNETGQFFFMEMNT 384


>gi|307107221|gb|EFN55464.1| hypothetical protein CHLNCDRAFT_133810 [Chlorella variabilis]
          Length = 1250

 Score = 83.6 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 32/231 (13%), Positives = 76/231 (32%), Gaps = 13/231 (5%)

Query: 42  VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +  V      D  F   +G   E+    A+ E   I +         +   K  ++++  
Sbjct: 68  LIEVAKSTGCDAVFPG-YGFLSENTEFAAMCEDNGIAFIGPTADTMRMFAQKHTARELAE 126

Query: 102 SCGVPVCPSILV---NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS- 157
              VP+     +       ++    +  P ++K   GG  +GI + + +  +  +   + 
Sbjct: 127 RAEVPILAGSPLLSSGEEALEYAKKVGLPVLLKATGGGGGIGIHICRSEDEVVNNYASAS 186

Query: 158 ---SSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTH 213
              ++      + +E+YV     +   + GD    +      +        K        
Sbjct: 187 RQGAAAFGDAGVFVEKYVQRARHIEVQIFGDGKGAIVAFPERECSIQRRHQKVL----EE 242

Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
                +  ++   +Q  A    Q    R     +F+ D  + + ++LE+N 
Sbjct: 243 TPSPFVTPELRAALQGAAVRLGQLAKYRSAGTVEFIVDDETGEFYFLEVNT 293


>gi|306832794|ref|ZP_07465929.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus bovis
           ATCC 700338]
 gi|304425029|gb|EFM28160.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus bovis
           ATCC 700338]
          Length = 456

 Score = 83.6 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 34/221 (15%), Positives = 79/221 (35%), Gaps = 18/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  FG   E+     + E + I +            DK+ ++  + +  VPV P    
Sbjct: 77  AIHPGFGFLSENSKFATMCEEMHIKFIGPSAEIMDKMGDKINARAEMIAANVPVIPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
            +      ++    +  P ++K   GG   GI  ++  + +         ++ +      
Sbjct: 137 EVFTAEEALEVADRLGYPVMLKASAGGGGKGIRKVESAEELVPAFESASQEALAAFGNGA 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDI 223
           + IE+ +     +   ++GD     +   V         L+ ++       P   I   +
Sbjct: 197 MYIEKVIYPARHIEVQILGD-----SHDNVVHLGERDCSLQRNNQKVLEESPSVAIGKTL 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             ++   A  A +A+        +FL D  + + +++E+N 
Sbjct: 252 RAQIGDAAIRAAKAVRYENAGTIEFLLDEKTSEFYFMEMNT 292


>gi|222618703|gb|EEE54835.1| hypothetical protein OsJ_02282 [Oryza sativa Japonica Group]
          Length = 1172

 Score = 83.6 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 53/280 (18%), Positives = 100/280 (35%), Gaps = 38/280 (13%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D D              V  ++A  +PD    
Sbjct: 99  SGTQACKALAEEGYEVVLVNSNPATIMTDPDLAHRTYIGPMTPPLVERIIAAERPDALLP 158

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G    +  V       L+ L +    + + A   + D+   KQ +   G+   PS  
Sbjct: 159 TMGGQTALNLAVSLADSGALDRLGVRLIGASLPAIRAAEDRQLFKQAMDRIGLKTPPSGI 218

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
              +      ++ +   P +++P       G  +               + +H  Q+L+E
Sbjct: 219 GTTLEECISIAEDIGEFPLIVRPAFTLGGTGGGIAYNRAEFEDICRAGLAASHTQQVLVE 278

Query: 170 QYVDG-IELTCGVMGDASLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPAK-IPLDIYKE 226
           + + G  E    VM D + +V  I   ++ D           +S  V PA+ +    Y+ 
Sbjct: 279 KSLLGWKEYELEVMRDMADNVVIICSIENIDPMGVHT----GDSITVAPAQTLTDKEYQR 334

Query: 227 VQRLAFLAHQAIG--CRGISRSDFLFDPLSRKVFWLEINV 264
           ++  +    + IG  C G S   F  +P   +V  +E+N 
Sbjct: 335 LRDYSVAIIREIGVECGG-SNVQFAVNPADGEVMVIEMNP 373



 Score = 55.1 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/188 (13%), Positives = 67/188 (35%), Gaps = 8/188 (4%)

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--FTMDSQHLISPPYVIKPLKGGSS 138
            +   +   + D+ R   ++   G+      +       +     +  P V++P      
Sbjct: 745 GTSPDSIDAAEDRKRFNAILEELGIEQPKGGIARSESDALSIASEVGYPVVVRPSYVLGG 804

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVMGDASLDVTEIAVPKS 197
             + ++  D+ +   L  +   +    +L+++Y +D IE+    + D+  +V    + + 
Sbjct: 805 RAMEIVYNDEKLIKYLATAVQVDPERPVLVDKYLIDAIEIDVDALADSVGNVVIGGIME- 863

Query: 198 DFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256
             +  +    S +S   LP + +       ++       + +   G+    +       +
Sbjct: 864 --HIEQAGIHSGDSACSLPTRTVSAKCLDIIRSWTTKLAKRLNVCGLMNCQYAITTS-GE 920

Query: 257 VFWLEINV 264
           VF LE N 
Sbjct: 921 VFLLEANP 928


>gi|150004028|ref|YP_001298772.1| pyruvate carboxylase subunit A [Bacteroides vulgatus ATCC 8482]
 gi|254882916|ref|ZP_05255626.1| pyruvate carboxylase subunit A [Bacteroides sp. 4_3_47FAA]
 gi|319639722|ref|ZP_07994454.1| pyruvate carboxylase subunit A [Bacteroides sp. 3_1_40A]
 gi|149932452|gb|ABR39150.1| pyruvate carboxylase subunit A [Bacteroides vulgatus ATCC 8482]
 gi|254835709|gb|EET16018.1| pyruvate carboxylase subunit A [Bacteroides sp. 4_3_47FAA]
 gi|317388638|gb|EFV69485.1| pyruvate carboxylase subunit A [Bacteroides sp. 3_1_40A]
          Length = 503

 Score = 83.6 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 40/223 (17%), Positives = 86/223 (38%), Gaps = 23/223 (10%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       +   I +            DK+ +++ + + GVPV P    
Sbjct: 77  AIHPGYGFLSENADFARRCKEEGIIFIGPAAETMEAMGDKIAARKRMIAAGVPVVPGTEQ 136

Query: 114 NRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
              + +      + I  P ++K   GG   G+ +I  +  +      + S +      D 
Sbjct: 137 PLQSAEEAVRICNEIGYPVMLKASMGGGGKGMRLIHSEDEVVEAYNTARSESMSSFGDDT 196

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK---IPL 221
           + +E++V+    +   ++GD   +V  +       +  E      N   V  +    +  
Sbjct: 197 VYLEKFVEEPHHIEFQILGDNHGNVIHL-------FDRECSVQRRNQKIVEESPSPFLTP 249

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           ++ +E+   A  A +A+   G    +FL D  +R  ++LE+N 
Sbjct: 250 ELRQEMGEKAVAAARAVNYSGAGTIEFLVDK-NRNFYFLEMNT 291


>gi|320547966|ref|ZP_08042248.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus equinus
           ATCC 9812]
 gi|320447390|gb|EFW88151.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus equinus
           ATCC 9812]
          Length = 456

 Score = 83.6 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 77/220 (35%), Gaps = 16/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  FG   E+     + E + I +            DK+ ++  + +  VPV P    
Sbjct: 77  AIHPGFGFLSENSKFATMCEEMHIKFIGPSAEIMDKMGDKINARAEMIAANVPVIPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
            +      +D    +  P ++K   GG   GI  ++  + +         ++ +      
Sbjct: 137 EVFTADEALDVAERLGYPVMLKASAGGGGKGIRKVESAEELVPAFESASQEALAAFGNGA 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+ +     +   ++GD+  +V  +            K             I   + 
Sbjct: 197 MYIEKVIYPARHIEVQILGDSHGNVIHLGERDCSLQRNNQKVL----EESPSIAIGKTLR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            ++ + A  A  A+        +FL D  + + +++E+N 
Sbjct: 253 TKIGQAAVRAASAVHYENAGTIEFLLDEKTSQFYFMEMNT 292


>gi|320100707|ref|YP_004176299.1| carbamoyl-phosphate synthase L chain ATP-binding protein
           [Desulfurococcus mucosus DSM 2162]
 gi|319753059|gb|ADV64817.1| Carbamoyl-phosphate synthase L chain ATP-binding protein
           [Desulfurococcus mucosus DSM 2162]
          Length = 502

 Score = 83.6 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 41/198 (20%), Positives = 78/198 (39%), Gaps = 15/198 (7%)

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGS 137
                     + DK   K +     VP  P  +V+      +       P V+KP +G  
Sbjct: 97  IGPPPSLIEFTRDKPAVKTLAEKLDVPTLPWSIVDDDADLEEFARAHGYPLVLKPARGAW 156

Query: 138 SLGIIVI---KKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIA 193
             GI V+   K  + +   + ++       ++ +E Y+     L   V+GD    V  + 
Sbjct: 157 GRGIRVLWSEKDAEQLKTAVKEAEKLYGDRRIYVEPYMGSAKLLEVQVIGDGE-KVIHLY 215

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
             ++      LK     +    P+K +  ++  ++   A    +A+  R  +  +FL+D 
Sbjct: 216 EREASLQDDYLK-----TVIEAPSKTVSKELRDKLVGYAVAVGEALRLRNTATVEFLYDV 270

Query: 253 LSRKVFWLEINVQPGMTP 270
            SR +F  E+N  PG++P
Sbjct: 271 RSRTLFLNEVN--PGLSP 286


>gi|307324575|ref|ZP_07603782.1| Carbamoyl-phosphate synthase L chain ATP-binding [Streptomyces
           violaceusniger Tu 4113]
 gi|306889819|gb|EFN20798.1| Carbamoyl-phosphate synthase L chain ATP-binding [Streptomyces
           violaceusniger Tu 4113]
          Length = 747

 Score = 83.6 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 80/221 (36%), Gaps = 17/221 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+G          + +      A  L  DK+R+K+ V + GVPV P    
Sbjct: 98  AVHPGYGFLAENGAFARACADAGLAFIGPPAGAIELMGDKIRAKETVHTAGVPVVPGSSG 157

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
           +  T D    +   I  P ++KP  GG   G+ +++ +  +  ++  +          D 
Sbjct: 158 SGLTDDQLTAAAREIGMPVLLKPSAGGGGKGMRLVRDEALLADEIAAARREARGAFGDDT 217

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           LL+E+++D    +   V+ D       +   +        K             +     
Sbjct: 218 LLVERWIDRPRHIEIQVLADGQGHAVHLGERECSLQRRHQKII----EEAPSPLLDEATR 273

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF-WLEINV 264
             +   A  A ++ G  G    +F+        + ++E+N 
Sbjct: 274 ARMGEAAVAAARSCGYVGAGTVEFIVPGDDPSAYCFMEMNT 314


>gi|329725355|gb|EGG61838.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Staphylococcus
           epidermidis VCU144]
          Length = 452

 Score = 83.6 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 35/216 (16%), Positives = 76/216 (35%), Gaps = 15/216 (6%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVN 114
           +G   E+G    + E  ++ +      +      K  +K  +    VPV P     I   
Sbjct: 81  YGFLAENGDFAELCEACQLKFIGPSYQSIQKMGIKDIAKAEMIKANVPVVPGSEGLIQSI 140

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGDQLLIE 169
                    I  P +IK   GG   GI V + ++ +            +++ +G   L E
Sbjct: 141 DDAKKIAKKIGYPVIIKATAGGGGKGIRVARDEKELETGYRMTQQEAETAFGNGGLYL-E 199

Query: 170 QYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           ++++    +   ++GD   +V  +            +             +  D  +E+ 
Sbjct: 200 KFIENFRHIEIQIIGDTYGNVIHLGERDCTI----QRRMQKLVEEAPSPVLSEDKRQEMG 255

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             A  A +A+        +F++D    + +++E+N 
Sbjct: 256 NAAIRAAKAVNYENAGTIEFIYDLDDNQFYFMEMNT 291


>gi|291616199|ref|YP_003518941.1| DUR1,2 [Pantoea ananatis LMG 20103]
 gi|291151229|gb|ADD75813.1| DUR1,2 [Pantoea ananatis LMG 20103]
          Length = 1805

 Score = 83.6 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 31/204 (15%), Positives = 68/204 (33%), Gaps = 14/204 (6%)

Query: 70  AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---QHLISP 126
           A  E   I +             K R++++ +  GVP+ P   +     D+      I  
Sbjct: 693 AACEEAGIVFVGPTAQQIGEFGLKHRARELAAHAGVPMTPGTPLLDSLDDALAAASHIGY 752

Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQLLIEQYVD-GIELTCGV 181
           P ++K   GG  +G+      +++             +     + +E+ +D    +   +
Sbjct: 753 PVMLKSTAGGGGIGLTRCADAEALRHAWESVRRLGEQFFSDAGVFLERCIDHARHVEVQI 812

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGC 240
            GD    V  +           L+  +       PA  +P      +   A    + +  
Sbjct: 813 FGDGKGTVVALGE-----RDCSLQRRNQKVVEETPAPCLPAATRDALLASAVRLGEVVNY 867

Query: 241 RGISRSDFLFDPLSRKVFWLEINV 264
           R     ++++D      ++LE+N 
Sbjct: 868 RSAGTVEYIYDAQQDAFYFLEVNT 891


>gi|330752392|emb|CBL87344.1| acetyl-CoA carboxylase biotin carboxylase subunit [uncultured
           Sphingobacteria bacterium]
 gi|330752520|emb|CBL87468.1| acetyl-CoA carboxylase biotin carboxylase subunit [uncultured
           Sphingobacteria bacterium]
          Length = 455

 Score = 83.6 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 80/220 (36%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+     I     I +            DK+ +K  + + GVPV P    
Sbjct: 77  AIHPGYGFLSENASFAEICTESGIKFIGPTAEQITKMGDKVTAKDTMKAAGVPVVPGSDG 136

Query: 112 LVNRFTMDS--QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL----DLLQSSSWNHGDQ 165
           LV    +       I  P +IK   GG   G+ +++ ++           ++ +    D 
Sbjct: 137 LVKNVAVGKKMATKIGYPVMIKATAGGGGKGMRIVEAEEDFEKNFESAQQEARASFGNDG 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+++     +   + GD   +V  ++           K             +   + 
Sbjct: 197 IYIEKFIVQPRHIEIQIAGDQKGNVCHLSERDCSVQRRHQK----LIEECPSPFVDEKLR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K++  +A  A + I   G+   +FL D   +  +++E+N 
Sbjct: 253 KKMGDVAIKAAKYINFEGMGTVEFLVDK-DKNFYFMEMNT 291


>gi|260434185|ref|ZP_05788156.1| methylcrotonoyl-CoA carboxylase subunit alpha [Silicibacter
           lacuscaerulensis ITI-1157]
 gi|260418013|gb|EEX11272.1| methylcrotonoyl-CoA carboxylase subunit alpha [Silicibacter
           lacuscaerulensis ITI-1157]
          Length = 643

 Score = 83.6 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 38/225 (16%), Positives = 82/225 (36%), Gaps = 23/225 (10%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      ++   + +      A      K  +K ++   G+PV P    
Sbjct: 77  AIHPGYGFLSENPDFVDAVQAAGLTFIGPSADAIRKMGLKDAAKALMEQAGIPVVPGYHG 136

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
           +    +    +   I  P +IK + GG   G+ ++++       L  +          D 
Sbjct: 137 DNQDPEHLAGAADTIGYPVLIKAVAGGGGKGMRLVERPADFAAALDSARGEARTAFGNDA 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           +L+E++V     +   V GD +  V              L+          PA  +  ++
Sbjct: 197 VLVEKFVAKPRHIEVQVFGDGTHAV------HLFERDCSLQRRHQKVIEEAPAPGMTPEM 250

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR----KVFWLEINV 264
            + + +    A +AIG +G    +F+ D        + +++E+N 
Sbjct: 251 REAMGQAGVRAAEAIGYKGAGTVEFIVDASDGLRPDRFWFMEMNT 295


>gi|284990020|ref|YP_003408574.1| carbamoyl-phosphate synthase L chain ATP- binding protein
           [Geodermatophilus obscurus DSM 43160]
 gi|284063265|gb|ADB74203.1| Carbamoyl-phosphate synthase L chain ATP- binding protein
           [Geodermatophilus obscurus DSM 43160]
          Length = 666

 Score = 83.6 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 48/221 (21%), Positives = 82/221 (37%), Gaps = 17/221 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       E   I +    + A     DK+R+KQ V + GVPV P    
Sbjct: 77  AVHPGYGFLSENVEFARACEKAGIVFIGPPVAAIEAMGDKIRAKQTVVAAGVPVVPGRTE 136

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
              + D    +   +  P ++KP  GG   G+ V++ +  +   +  +          D 
Sbjct: 137 PGMSDDEVAAAAVEVGFPVLLKPSAGGGGKGMRVVRAEAELGDAIAGARREARGSFGDDT 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           LL+E+YV     +   V+GDA   V  +   +        K             +     
Sbjct: 197 LLVERYVGSARHVEVQVLGDAHGTVVHLGERECSLQRRHQK----VIEEAPSPLLDAATR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFD-PLSRKVFWLEINV 264
             +   A  A +A+G  G    +F+ D       F+LE+N 
Sbjct: 253 AAMGTAAVEAARAVGYTGAGTVEFIVDAERPSDFFFLEMNT 293


>gi|152984783|ref|YP_001347635.1| putative biotin carboxylase/biotin carboxyl carrier protein
           [Pseudomonas aeruginosa PA7]
 gi|150959941|gb|ABR81966.1| probable biotin carboxylase/biotin carboxyl carrier protein
           [Pseudomonas aeruginosa PA7]
          Length = 661

 Score = 83.6 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 71/220 (32%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       E   I +      A  L   K  SK  + + GVP  P    
Sbjct: 79  AIHPGYGFLSENAEFARACEAAGIVFIGPDAEAIHLMGSKRLSKIAMLAAGVPCIPGYEG 138

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS-----SWNHGD 164
                         I  P +IK   GG   G+ ++++   +   L  +      ++   +
Sbjct: 139 AEQDDATLRREAERIGYPLMIKASAGGGGRGMRLVEEPDQLLDQLRTARSEALGAFGSAE 198

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
            +L +  +    +   V GD   ++  +            K             +  D+ 
Sbjct: 199 LILEKAVLRPRHVEIQVFGDRHGNLLYLGERDCSVQRRHQK----VIEEAPCPVLDADLR 254

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +   A  A  ++   G    +FL      + ++LE+N 
Sbjct: 255 RAMGEAAVKAAASVNYVGAGTVEFLL-AEDGRFYFLEMNT 293


>gi|167523996|ref|XP_001746334.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163775096|gb|EDQ88721.1| predicted protein [Monosiga brevicollis MX1]
          Length = 641

 Score = 83.6 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 44/220 (20%), Positives = 83/220 (37%), Gaps = 19/220 (8%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL----VN 114
           +G   E+     + +   + +      A      K  SK +++  GVPV P         
Sbjct: 82  YGFLSENAAFANLCKEEGLIFIGPPASAIESMGSKSESKNIMAPSGVPVVPGYHGENQDP 141

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP--LDLLQSSSWNH------GDQL 166
            F +     +  P +IK +KGG   G+ V+  +      LD+ Q+  +         D++
Sbjct: 142 EFLLQQAREVGFPVLIKAVKGGGGKGMRVVMNEADFAESLDMAQACYFAEARKHFGDDRV 201

Query: 167 LIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIY 224
           LIE+YV     +   V  D   +               L+          PA  +  +  
Sbjct: 202 LIERYVQRPRHVEVQVFADQHGNAV-----HLFERDCSLQRRHQKVIEEAPAPGLRPETR 256

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +   A  A  A+G  G    +F+ D ++++ F++E+N 
Sbjct: 257 QAMGEAAVRAALAVGYEGAGTVEFIMDTVTQEFFFMEMNT 296


>gi|45383466|ref|NP_989677.1| pyruvate carboxylase [Gallus gallus]
 gi|22128505|gb|AAM92771.1|AF509529_1 pyruvate carboxylase [Gallus gallus]
          Length = 1178

 Score = 83.6 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 31/199 (15%), Positives = 69/199 (34%), Gaps = 16/199 (8%)

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVI 130
             + +            DK+ ++ +  + GVPV P     +       D    +  P + 
Sbjct: 134 AGVRFVGPPPEVVRKMGDKVEARSIAIAAGVPVVPGTSAPVATLGEAQDFAARVGFPIIF 193

Query: 131 KPLKGGSSLGIIVIKKDQSIPL----DLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDA 185
           K   GG   G+  ++  Q +         ++ +      L +E+ ++    +   ++GD 
Sbjct: 194 KAAHGGGGRGMRAVRGPQELEESFSRASSEALAAFGDGALFVEKLMERPRHIEGQILGDK 253

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGIS 244
             +V  +            K        + P A++   +  ++   A    Q +G     
Sbjct: 254 HGNVVHLYERDCSIQRRHQK-----VVEIAPAARLDPQLRAQLASDAVRIAQQVGYENAG 308

Query: 245 RSDFLFDPLSRKVFWLEIN 263
             +FL D    K +++E+N
Sbjct: 309 TVEFLVD-RDGKHYFIEVN 326


>gi|27468125|ref|NP_764762.1| acetyl-CoA carboxylase biotin carboxylase subunit [Staphylococcus
           epidermidis ATCC 12228]
 gi|57867016|ref|YP_188664.1| acetyl-CoA carboxylase biotin carboxylase subunit [Staphylococcus
           epidermidis RP62A]
 gi|251810939|ref|ZP_04825412.1| acetyl-CoA carboxylase biotin carboxylase subunit [Staphylococcus
           epidermidis BCM-HMP0060]
 gi|282876052|ref|ZP_06284919.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Staphylococcus
           epidermidis SK135]
 gi|293366517|ref|ZP_06613194.1| acetyl-CoA carboxylase [Staphylococcus epidermidis M23864:W2(grey)]
 gi|27315671|gb|AAO04806.1|AE016748_40 acetyl-CoA carboxylase (biotin carboxylase subunit) accC
           [Staphylococcus epidermidis ATCC 12228]
 gi|57637674|gb|AAW54462.1| acetyl-CoA carboxylase, biotin carboxylase [Staphylococcus
           epidermidis RP62A]
 gi|251805619|gb|EES58276.1| acetyl-CoA carboxylase biotin carboxylase subunit [Staphylococcus
           epidermidis BCM-HMP0060]
 gi|281295077|gb|EFA87604.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Staphylococcus
           epidermidis SK135]
 gi|291319286|gb|EFE59655.1| acetyl-CoA carboxylase [Staphylococcus epidermidis M23864:W2(grey)]
 gi|329735210|gb|EGG71502.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Staphylococcus
           epidermidis VCU045]
 gi|329737176|gb|EGG73430.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Staphylococcus
           epidermidis VCU028]
          Length = 452

 Score = 83.6 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 35/216 (16%), Positives = 76/216 (35%), Gaps = 15/216 (6%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVN 114
           +G   E+G    + E  ++ +      +      K  +K  +    VPV P     I   
Sbjct: 81  YGFLAENGDFAELCEACQLKFIGPSYQSIQKMGIKDIAKAEMIKANVPVVPGSEGLIQSI 140

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGDQLLIE 169
                    I  P +IK   GG   GI V + ++ +            +++ +G   L E
Sbjct: 141 DDAKKIAKKIGYPVIIKATAGGGGKGIRVARDEKELETGYRMTQQEAETAFGNGGLYL-E 199

Query: 170 QYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           ++++    +   ++GD   +V  +            +             +  D  +E+ 
Sbjct: 200 KFIENFRHIEIQIIGDTYGNVIHLGERDCTI----QRRMQKLVEEAPSPVLSEDKRQEMG 255

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             A  A +A+        +F++D    + +++E+N 
Sbjct: 256 NAAIRAAKAVNYENAGTIEFIYDLDDNQFYFMEMNT 291


>gi|50546845|ref|XP_500892.1| YALI0B14619p [Yarrowia lipolytica]
 gi|49646758|emb|CAG83143.1| YALI0B14619p [Yarrowia lipolytica]
          Length = 725

 Score = 83.6 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 38/225 (16%), Positives = 83/225 (36%), Gaps = 23/225 (10%)

Query: 58  LHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL-- 112
           +H  +G   E+      ++   + +      A      K RSK++++  GV   P     
Sbjct: 103 IHPGYGFLSENSEFAKKVQDAGLIFVGPPAAAMEAMGSKSRSKEIMTDAGVSCVPGYHGE 162

Query: 113 --VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQL 166
               +F       +  P +IK + GG   G+ +++        L  + S        +++
Sbjct: 163 NQDPKFLEAESEKMGFPVLIKAVLGGGGKGMRIVESKADFQKQLASAKSEAKSSFGDERV 222

Query: 167 LIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK----IPL 221
           L+E+Y+     +   V  D   +V  +           ++          PA        
Sbjct: 223 LVEKYIKRPRHVEVQVFADKFGNVVALGE-----RDCSVQRRHQKVLEESPAPGLELYSA 277

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL--SRKVFWLEINV 264
           D  +++ + A  A +A+   G    +F+FD    + + +++E+N 
Sbjct: 278 DCRQKMYKQACDAARAVNYEGAGTVEFIFDRDSPNGQFYFMEMNT 322


>gi|313681642|ref|YP_004059380.1| carbamoyl-phosphate synthase l chain ATP-binding protein
           [Sulfuricurvum kujiense DSM 16994]
 gi|313154502|gb|ADR33180.1| Carbamoyl-phosphate synthase L chain ATP-binding protein
           [Sulfuricurvum kujiense DSM 16994]
          Length = 485

 Score = 83.6 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 39/235 (16%), Positives = 86/235 (36%), Gaps = 31/235 (13%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL----ISPPYVIK 131
            I +        AL  DKM SK  +   GVP+ P        ++        I  P +IK
Sbjct: 102 GIIFIGPKPEHIALFGDKMASKVAMREVGVPMLPGTDEPIDNIEDAEKIAIDIGFPIIIK 161

Query: 132 PLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDAS 186
              GG   G+ +++K +           ++  +    ++ IE+Y+     +   ++ D  
Sbjct: 162 AAFGGGGRGMRIVEKAEDFKEMYESATNEALRFFSRGEVFIEKYLKNPRHIEIQIVADKY 221

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISR 245
            ++              ++        + P+  +  +  +E+ R++  A   +G   +  
Sbjct: 222 GNIV-----HLGDRDCSIQRRHQKVIEIAPSPLLNHETRRELYRISKKAMYRLGYESVGT 276

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIF----PEMAAYAGYSFRELLLWMVEDA 296
            ++L D     ++++E+N               P   A +G    +L+  M++ A
Sbjct: 277 IEYLVDQDDN-IYFIEMNT--------RVQVEHPVTEAISGI---DLIQRMIQIA 319


>gi|323528821|ref|YP_004230973.1| urea carboxylase [Burkholderia sp. CCGE1001]
 gi|323385823|gb|ADX57913.1| urea carboxylase [Burkholderia sp. CCGE1001]
          Length = 1213

 Score = 83.6 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 40/234 (17%), Positives = 80/234 (34%), Gaps = 27/234 (11%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI---LVNRFTMDSQHLISPPYVIKP 132
            I +             K  ++ + +S GVP+             +D+   I  P ++K 
Sbjct: 105 GIAFIGPTPKQLREFGLKHTARAIAASQGVPMLEGTGLLDDLAAALDAAARIGYPVMLKS 164

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQLLIEQYVD-GIELTCGVMGDASL 187
             GG  +G+ V    + +                   + +E+Y++    L   V GD   
Sbjct: 165 TAGGGGIGMRVCSSPEELSAHFDAVKRLGQNNFSDAGVFLEKYIERARHLEVQVFGDGQG 224

Query: 188 DVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           D   + V          K             +P  +   +   A    +A+  R     +
Sbjct: 225 DAIALGVRDCSVQRRNQKVL----EETPAPNLPDGMAAALCEAALKLARAVHYRSAGTVE 280

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR----ELLLWMVEDAS 297
           F++D L++K ++LE+N             +    G + +    +L+ WM+E A+
Sbjct: 281 FVYDALAQKFYFLEVNT-----------RLQVEHGVTEQVWKVDLVRWMIELAA 323


>gi|257425730|ref|ZP_05602154.1| acetyl-CoA biotin carboxylase [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257428391|ref|ZP_05604789.1| acetyl-CoA biotin carboxylase [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257431029|ref|ZP_05607408.1| acetyl-CoA biotin carboxylase [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257433715|ref|ZP_05610073.1| acetyl-CoA biotin carboxylase [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257436630|ref|ZP_05612674.1| acetyl-CoA biotin carboxylase [Staphylococcus aureus subsp. aureus
           M876]
 gi|282914411|ref|ZP_06322197.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Staphylococcus
           aureus subsp. aureus M899]
 gi|282924706|ref|ZP_06332374.1| acetyl-CoA carboxylase biotin carboxylase subunit [Staphylococcus
           aureus subsp. aureus C101]
 gi|293503486|ref|ZP_06667333.1| biotin carboxylase [Staphylococcus aureus subsp. aureus 58-424]
 gi|293510503|ref|ZP_06669209.1| biotin carboxylase [Staphylococcus aureus subsp. aureus M809]
 gi|293531043|ref|ZP_06671725.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Staphylococcus
           aureus subsp. aureus M1015]
 gi|257271424|gb|EEV03570.1| acetyl-CoA biotin carboxylase [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257275232|gb|EEV06719.1| acetyl-CoA biotin carboxylase [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257278232|gb|EEV08874.1| acetyl-CoA biotin carboxylase [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257281808|gb|EEV11945.1| acetyl-CoA biotin carboxylase [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257283981|gb|EEV14104.1| acetyl-CoA biotin carboxylase [Staphylococcus aureus subsp. aureus
           M876]
 gi|282313541|gb|EFB43936.1| acetyl-CoA carboxylase biotin carboxylase subunit [Staphylococcus
           aureus subsp. aureus C101]
 gi|282321592|gb|EFB51917.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Staphylococcus
           aureus subsp. aureus M899]
 gi|290920311|gb|EFD97377.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Staphylococcus
           aureus subsp. aureus M1015]
 gi|291095152|gb|EFE25417.1| biotin carboxylase [Staphylococcus aureus subsp. aureus 58-424]
 gi|291466867|gb|EFF09387.1| biotin carboxylase [Staphylococcus aureus subsp. aureus M809]
          Length = 453

 Score = 83.6 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 41/220 (18%), Positives = 79/220 (35%), Gaps = 18/220 (8%)

Query: 56  NVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
           N +H  +G   E   +   +E   I +         +  DK+ ++Q V   GVPV P   
Sbjct: 75  NAIHPGYGFLSESTKIAQTVEEQGIAFIGPTKKTMEMMGDKITARQTVHHAGVPVIPGSN 134

Query: 111 --ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS----WNHGD 164
             +            I  P VIK   GG   GI ++KK + +     ++ S    +   D
Sbjct: 135 DAVNHVSEIEKLAKDIGYPVVIKAASGGGGKGIRIVKKAEDLEKAFKEAKSEGKKYFDDD 194

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           ++ +E ++     +   VMGD   +   +            + +         A +  + 
Sbjct: 195 RVYVEAFIPVAKHVEVQVMGDGQDNYVHLGERDCSV----QRKNQKLIEESPCAALTEER 250

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            +++   A    +A   R     +FL        +++E+N
Sbjct: 251 RQQICNDAVKVARAANYRSAGTIEFLVT--DNAHYFIEMN 288


>gi|294506946|ref|YP_003571004.1| Acetyl-CoA carboxylase, biotin carboxylase [Salinibacter ruber M8]
 gi|294343274|emb|CBH24052.1| Acetyl-CoA carboxylase, biotin carboxylase [Salinibacter ruber M8]
          Length = 455

 Score = 83.6 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 80/220 (36%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+     I    +I +        +L  +K ++K+ +   GVP+      
Sbjct: 79  AIHPGYGFLAENAEFSQICADNDIEFIGPSAETISLMGEKSKAKEEMHKAGVPIVEGSDG 138

Query: 114 NRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGDQ 165
               +D+       I  P ++K + GG   G+ ++++             ++ +     +
Sbjct: 139 TVGDLDAAYEIASDIGFPVMVKAVAGGGGTGMRLVREADGFERAFNGARSEADAAFGNPE 198

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE++V+    +   V+GD   +V      +        K             +   + 
Sbjct: 199 VYIEKFVEKPRHVEIQVLGDGRGNVMHFGERECSIQRRHQKLL----EECPSPVVDEALR 254

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +E+   A    +A+   G    +FL     R  +++E+N 
Sbjct: 255 EEMGAAAIRGAEAVNYEGAGTVEFLV-GADRNFYFMEMNT 293


>gi|323488481|ref|ZP_08093726.1| pyruvate carboxylase [Planococcus donghaensis MPA1U2]
 gi|323397849|gb|EGA90650.1| pyruvate carboxylase [Planococcus donghaensis MPA1U2]
          Length = 1146

 Score = 83.6 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 33/221 (14%), Positives = 83/221 (37%), Gaps = 20/221 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+       E  +I +         +  DK++++    + G+PV P    
Sbjct: 80  AIHPGYGFLSENVHFARRCEEEDIIFIGPTSKHLDMFGDKVKARTQAIAAGIPVIPGTDG 139

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGDQ 165
            +   +   +       P +IK   GG   G+ +++  + +         ++ +    D+
Sbjct: 140 PVESLKEVEEFSKTAGFPLMIKASLGGGGRGMRIVRSQEELASSYERAKSEAKAAFGSDE 199

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           + +E++V+    +   ++GD+  +V  +            K        + P+  I  ++
Sbjct: 200 MYVEKFVEKPKHIEVQILGDSEGNVIHLYERDCSIQRRHQK-----VVEIAPSNSISNEL 254

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             E+   A    + I        +FL    + + +++E+N 
Sbjct: 255 RNEICDAAVKLMKNIDYINAGTVEFLV--ANDEFYFIEVNP 293


>gi|300122746|emb|CBK23311.2| Pyruvate Carboxylase (subunit ?) [Blastocystis hominis]
          Length = 1175

 Score = 83.6 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 82/221 (37%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+      +E   I +    +    +  DK  +++V    G+PV P    
Sbjct: 100 AIHPGYGFLSENAEFAKAVEDAGIVFIGPTVENLRMMADKTSARKVAIDHGIPVVPGTPD 159

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGDQ 165
            +      +   + +  P +IK   GG   G+ V++ +Q +     L   ++ S      
Sbjct: 160 PVATYEQALSFCNEVGYPVIIKAAFGGGGKGMRVVRSEQELKQNFELASREALSAFGNGT 219

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDI 223
           + +E+Y++    +   V+GD +  V  +           ++          PA  +   I
Sbjct: 220 IFLERYLEEPRHIEVQVIGDGTGRVVHLYE-----RDCSVQRRHQKVIENAPAVNLDPAI 274

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              + + A      I  R     +FL D   R  +++E+N 
Sbjct: 275 RDGILQSACRLCSLIKYRSAGTVEFLVDKQGR-YYFMEVNP 314


>gi|153953084|ref|YP_001393849.1| pyruvate carboxylase [Clostridium kluyveri DSM 555]
 gi|146345965|gb|EDK32501.1| Pyc [Clostridium kluyveri DSM 555]
          Length = 1146

 Score = 83.6 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 41/242 (16%), Positives = 88/242 (36%), Gaps = 22/242 (9%)

Query: 35  QIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSM 91
            +D+D  + + L   K D     +H  +G   E+  +    E   I +         +  
Sbjct: 64  YLDIDEIINIALKK-KVD----AIHPGYGFLAENPELARKCEQAGIEFIGPTSSMMEMLG 118

Query: 92  DKMRSKQVVSSCGVPVCPSIL----VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147
           DK++SK V     VP  P I          ++       P ++K   GG   G+ +++++
Sbjct: 119 DKIKSKIVAKKADVPTIPGIQEPIKTEEQALEFARYCGYPVMVKAAAGGGGRGMRIVREE 178

Query: 148 QSIPLDLLQSSSWNHG----DQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSY 202
           + +      + S +      + + IE+Y++    +   ++GD   +V  +          
Sbjct: 179 KDLLESYNSAKSESMKAFGSEDIFIEKYIESPKHIEVQILGDKHGNVVHLYERDCSIQRR 238

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
             K             +  +   E+   A    +++G R     +FL D      +++E+
Sbjct: 239 HQK----VIEFTPSIALSDEKRNEICEDALKIARSVGYRSAGTLEFLVDKHGNH-YFIEM 293

Query: 263 NV 264
           N 
Sbjct: 294 NT 295


>gi|83593770|ref|YP_427522.1| acetyl-CoA carboxylase biotin carboxylase subunit [Rhodospirillum
           rubrum ATCC 11170]
 gi|83576684|gb|ABC23235.1| Acetyl-CoA carboxylase, biotin carboxylase [Rhodospirillum rubrum
           ATCC 11170]
          Length = 445

 Score = 83.6 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 33/220 (15%), Positives = 77/220 (35%), Gaps = 18/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     +++     +         L  DK+ +KQ     G+P  P    
Sbjct: 77  AIHPGYGFLSENADFAEMVQDHGFTFIGPSPRHIRLMGDKITAKQAALEAGLPCVPGSAG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
            +      +        P + K   GG   G+ V      +         ++ +     +
Sbjct: 137 AVTSEEEGLKVAAAFGYPVLFKATAGGGGRGMKVATGPHDLGEAFRTARTEAQAAFGNSE 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+Y+ +   +   V+GD       +        S + K+  +      PA +  +  
Sbjct: 197 VYMEKYLQNPRHIEVQVLGDNYGGAVYLGERD---CSLQRKHQKVLEEARSPA-LNDEAR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +  +A  A + +G       +FL++    + +++E+N 
Sbjct: 253 ARIGEIARRAVERLGYSNAGTMEFLYEE--GEFYFIEMNT 290


>gi|226362384|ref|YP_002780162.1| acetyl-CoA carboxylase biotin carboxylase subunit [Rhodococcus
           opacus B4]
 gi|226240869|dbj|BAH51217.1| acetyl-CoA carboxylase biotin carboxylase subunit [Rhodococcus
           opacus B4]
          Length = 469

 Score = 83.6 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 36/218 (16%), Positives = 78/218 (35%), Gaps = 15/218 (6%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+    A      + +      A A + DK R++++  S  +PV     V
Sbjct: 92  AVHPGYGFLSENPEFAAACVAEGLTFVGPRPAAVAEAGDKARARELARSANIPVLSGSPV 151

Query: 114 ---NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL----DLLQSSSWNHGDQL 166
                  + +   +  P ++K   GG   G+ V++ +  +         ++ S     +L
Sbjct: 152 LDSAEAAVAAAAELGYPVLVKAAAGGGGRGMSVVENESELRARWSPAGAEAQSAFGDGRL 211

Query: 167 LIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
            +E+++     +   V+GD    V  +            K             +P +I +
Sbjct: 212 YVERFIRNARHIEVQVLGDKHGSVIHLGERDCTLQRRHQK----VVEESPAPNLPEEIRQ 267

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            + R      +A+        +F++D    +  +LE N
Sbjct: 268 HIHRSGVAFAEALELDSAGTVEFIYDADRSEFAFLEFN 305


>gi|316932504|ref|YP_004107486.1| urea carboxylase [Rhodopseudomonas palustris DX-1]
 gi|315600218|gb|ADU42753.1| urea carboxylase [Rhodopseudomonas palustris DX-1]
          Length = 1182

 Score = 83.6 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 33/220 (15%), Positives = 82/220 (37%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      L+   I +             K R++++  +  VP+ P   +
Sbjct: 77  AVHPGYGFLSENRGFAERLKQHGIAFIGPRPEHLEAFGLKHRARELAQASNVPLLPGTGL 136

Query: 114 N---RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ----SSSWNHGDQL 166
                  +++   I  P ++K   GG  +G+ +   + ++          + +     ++
Sbjct: 137 IDSIEEALEASARIGFPLMLKSTAGGGGIGMQLCHDEATLRERFATVQRTARASFGDARV 196

Query: 167 LIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIY 224
            +E++V D   +   + GD   +V  +           L+  +       PA  I  ++ 
Sbjct: 197 YLERFVADARHIEVQIFGDGQGNVIALGE-----RDCSLQRRNQKVVEETPAPGISDEMR 251

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             + + A    Q++        +F++D    + ++LE+N 
Sbjct: 252 ARLHQAAVALGQSVAYESAGTVEFIYDVARDEFYFLEVNT 291


>gi|163746192|ref|ZP_02153551.1| methylcrotonyl-CoA carboxylase, alpha subunit [Oceanibulbus
           indolifex HEL-45]
 gi|161380937|gb|EDQ05347.1| methylcrotonyl-CoA carboxylase, alpha subunit [Oceanibulbus
           indolifex HEL-45]
          Length = 648

 Score = 83.6 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 43/225 (19%), Positives = 79/225 (35%), Gaps = 23/225 (10%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      +E   + +      A      K  +K ++   GVPV P    
Sbjct: 77  AIHPGYGFLSENPDFVEAVEAAGLIFVGPSAKAIRAMGLKDAAKALMVEAGVPVVPGYHG 136

Query: 114 NRFT----MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
                    D    I  P +IK + GG   G+ ++++ +     L  + S          
Sbjct: 137 ADQDDALLADEAGKIGYPVLIKAVAGGGGKGMRLVEEAKEFQAALDSARSEAKTAFGNSD 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           +L+E++V     +   V GD +  V              L+          PA  +  ++
Sbjct: 197 VLVEKFVTKPRHIEVQVFGDGTHAV------HLFERDCSLQRRHQKVIEEAPAPGMTEEM 250

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR----KVFWLEINV 264
              + + A  A +AIG  G    +F+ D          F++E+N 
Sbjct: 251 RSAMGQAAVRAAEAIGYAGAGTVEFIVDGSGGLSADGFFFMEMNT 295


>gi|332665548|ref|YP_004448336.1| carbamoyl-phosphate synthase, large subunit [Haliscomenobacter
           hydrossis DSM 1100]
 gi|332334362|gb|AEE51463.1| carbamoyl-phosphate synthase, large subunit [Haliscomenobacter
           hydrossis DSM 1100]
          Length = 938

 Score = 83.6 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 55/278 (19%), Positives = 110/278 (39%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG   + +L + G +VS I+ +                      S+  +L   K D    
Sbjct: 29  SGSQASRSLREEGIEVSLINSNPATIMTDPVTADNVYLLPLTVESIVQILEERKIDAVLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  ++     + +   +      I A  L+ ++   +Q +   G+ V PS +
Sbjct: 89  TMGGQTALNLAIEADKMGVWDKYGVRMIGVDIAAIELTENREAFRQHMIDIGLDVAPSFI 148

Query: 113 VNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            N F    ++   I  P VI+P       G   + K++     L +  + +   ++L+E+
Sbjct: 149 ANSFLEGKEAAQKIGFPLVIRPSYTLGGTGGGFVHKEEEFDAALRRGLNASPTHEVLVEK 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            V G  E    ++ D +  V  I   ++    ++       +S  V PA  +    Y+++
Sbjct: 209 AVLGWKEFELELLRDKNDSVVIICTVEN----FDPMGIHTGDSITVAPAMTLSDTAYQDM 264

Query: 228 QRLAFLAHQAIG-CRGISRSDFLFDPLSRKVFWLEINV 264
           +  A LA +++G   G     F  DP++ K+  +EIN 
Sbjct: 265 RDQAILAMRSLGNFSGGCNIQFAQDPVTEKLIVIEINP 302



 Score = 62.1 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 24/193 (12%), Positives = 63/193 (32%), Gaps = 10/193 (5%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--QHLISPPYVIKPL 133
            I    +      L+ D+     ++    +P     + +         + +  P +++P 
Sbjct: 655 GIKIIGTSFANMDLAEDRGAFSDLLKELEIPYPDYGVADDVDEAIRIANKVGYPVLVRPS 714

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC--GVMGDASLDVTE 191
                  + ++  DQ +   +L        +++LI+ ++D  +      +     + +  
Sbjct: 715 YVLGGQSMRIVINDQEVERHVLSIFKHMPENKVLIDHFLDRAKEAEIDAIFDGEDIHIMG 774

Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
           I         +    S  +S  +    + +D    +   A    +A+  RG+    F   
Sbjct: 775 IMEHIEPAGIH----SGDSSAVLPTYSLSVDAVATMVEHAEKLARALNIRGLINIQFAI- 829

Query: 252 PLSRKVFWLEINV 264
                V+ +E N 
Sbjct: 830 -KDNHVYVIEANP 841


>gi|251787696|ref|YP_003002417.1| urea carboxylase [Dickeya zeae Ech1591]
 gi|247536317|gb|ACT04938.1| urea carboxylase [Dickeya zeae Ech1591]
          Length = 1197

 Score = 83.6 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 32/220 (14%), Positives = 77/220 (35%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+       E + + +    +        K +++ +     VP+ P    
Sbjct: 77  AIHPGYGFLSENAGFVTRCEQVGLIFLGPTVAQMTAFGLKHQARALAQHNDVPLLPGSGL 136

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN----HGDQL 166
           +       +    I  P ++K   GG  +G+     +  +     +           D +
Sbjct: 137 LTSLDSACEQAQRIGYPVMLKSTAGGGGIGMQRCNDEDQLIDAFTRVKRLAGNNFADDGV 196

Query: 167 LIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIY 224
            +E+++     +   V GD   +V  +            +  +       PA  +   + 
Sbjct: 197 FLEKFIAQARHIEVQVFGDGQGNVIALGE-----RDCSAQRRNQKVIEETPAPHLSDGVR 251

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            E+Q  A    +A+  R     ++++D  S++ ++LE+N 
Sbjct: 252 AELQATAIRLCRAVNYRSAGTVEYVYDESSKQFWFLEVNT 291


>gi|254693894|ref|ZP_05155722.1| propionyl-coenzyme A carboxylase, alpha polypeptide [Brucella
           abortus bv. 3 str. Tulya]
 gi|261214183|ref|ZP_05928464.1| carbamoyl-phosphate synthase subunit L ATP-binding protein
           [Brucella abortus bv. 3 str. Tulya]
 gi|260915790|gb|EEX82651.1| carbamoyl-phosphate synthase subunit L ATP-binding protein
           [Brucella abortus bv. 3 str. Tulya]
          Length = 667

 Score = 83.6 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 45/240 (18%), Positives = 86/240 (35%), Gaps = 16/240 (6%)

Query: 34  SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDK 93
           S I +D+ +   +  +  D      +G   E+      L+   + +    + A     DK
Sbjct: 59  SYIVIDK-ILAAIKEIGADAVHPG-YGFLSENPRFAEALKAANVTFIGPPVNAIDAMGDK 116

Query: 94  MRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQS 149
           + SK++ +  GV   P  +      D        I  P +IK   GG   G+ +   D+ 
Sbjct: 117 ITSKKLAAEAGVSTVPGHMGLIEDADEAVRIAGSIGYPVMIKASAGGGGKGMRIAWNDEE 176

Query: 150 ----IPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYEL 204
                 L   ++ S    D++ IE++V     +   V+GD   +V  +   +        
Sbjct: 177 AREGFQLSRNEAKSSFGDDRIFIEKFVTQPRHIEIQVLGDQHGNVVYLGERECSIQRRNQ 236

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K             +     K +   A    +A+G       +F+ D  +R  ++LE+N 
Sbjct: 237 K----VIEEAPSPFLDEATRKAMGEQAVALAKAVGYYSAGTVEFIVDG-NRNFYFLEMNT 291


>gi|17987083|ref|NP_539717.1| propionyl-COA carboxylase alpha chain, mitochondrial [Brucella
           melitensis bv. 1 str. 16M]
 gi|62290100|ref|YP_221893.1| propionyl-CoA carboxylase subunit alpha [Brucella abortus bv. 1
           str. 9-941]
 gi|82700023|ref|YP_414597.1| carbamoyl-phosphate synthase subunit L [Brucella melitensis biovar
           Abortus 2308]
 gi|189024338|ref|YP_001935106.1| Propionyl-COA carboxylase alpha chain [Brucella abortus S19]
 gi|225852685|ref|YP_002732918.1| propionyl-coenzyme A carboxylase subunit alpha [Brucella melitensis
           ATCC 23457]
 gi|237815606|ref|ZP_04594603.1| propionyl-CoA carboxylase, alpha subunit [Brucella abortus str.
           2308 A]
 gi|254697544|ref|ZP_05159372.1| propionyl-coenzyme A carboxylase, alpha polypeptide [Brucella
           abortus bv. 2 str. 86/8/59]
 gi|254730439|ref|ZP_05189017.1| propionyl-coenzyme A carboxylase, alpha polypeptide [Brucella
           abortus bv. 4 str. 292]
 gi|256044840|ref|ZP_05447744.1| propionyl-coenzyme A carboxylase, alpha polypeptide [Brucella
           melitensis bv. 1 str. Rev.1]
 gi|256113745|ref|ZP_05454549.1| propionyl-coenzyme A carboxylase, alpha polypeptide [Brucella
           melitensis bv. 3 str. Ether]
 gi|256263824|ref|ZP_05466356.1| propionyl-COA carboxylase subunit alpha [Brucella melitensis bv. 2
           str. 63/9]
 gi|260546649|ref|ZP_05822388.1| propionyl-COA carboxylase subunit alpha [Brucella abortus NCTC
           8038]
 gi|260565559|ref|ZP_05836043.1| propionyl-COA carboxylase subunit alpha [Brucella melitensis bv. 1
           str. 16M]
 gi|260758147|ref|ZP_05870495.1| carbamoyl-phosphate synthase subunit L ATP-binding protein
           [Brucella abortus bv. 4 str. 292]
 gi|260761973|ref|ZP_05874316.1| carbamoyl-phosphate synthase subunit L ATP-binding protein
           [Brucella abortus bv. 2 str. 86/8/59]
 gi|265991267|ref|ZP_06103824.1| carbamoyl-phosphate synthase subunit L ATP-binding protein
           [Brucella melitensis bv. 1 str. Rev.1]
 gi|265995103|ref|ZP_06107660.1| carbamoyl-phosphate synthase subunit L [Brucella melitensis bv. 3
           str. Ether]
 gi|17982742|gb|AAL51981.1| propionyl-CoA carboxylase alpha chain [Brucella melitensis bv. 1
           str. 16M]
 gi|62196232|gb|AAX74532.1| PccA, propionyl-CoA carboxylase, alpha subunit [Brucella abortus
           bv. 1 str. 9-941]
 gi|82616124|emb|CAJ11167.1| Biotin/lipoyl attachment:Biotin-requiring enzyme, attachment
           site:Carbamoyl-phosphate synthase L chain,
           ATP-binding:Carbamoyl [Brucella melitensis biovar
           Abortus 2308]
 gi|189019910|gb|ACD72632.1| Propionyl-COA carboxylase alpha chain [Brucella abortus S19]
 gi|225641050|gb|ACO00964.1| propionyl-coenzyme A carboxylase, alpha polypeptide [Brucella
           melitensis ATCC 23457]
 gi|237788904|gb|EEP63115.1| propionyl-CoA carboxylase, alpha subunit [Brucella abortus str.
           2308 A]
 gi|260095699|gb|EEW79576.1| propionyl-COA carboxylase subunit alpha [Brucella abortus NCTC
           8038]
 gi|260151627|gb|EEW86721.1| propionyl-COA carboxylase subunit alpha [Brucella melitensis bv. 1
           str. 16M]
 gi|260668465|gb|EEX55405.1| carbamoyl-phosphate synthase subunit L ATP-binding protein
           [Brucella abortus bv. 4 str. 292]
 gi|260672405|gb|EEX59226.1| carbamoyl-phosphate synthase subunit L ATP-binding protein
           [Brucella abortus bv. 2 str. 86/8/59]
 gi|262766216|gb|EEZ12005.1| carbamoyl-phosphate synthase subunit L [Brucella melitensis bv. 3
           str. Ether]
 gi|263002051|gb|EEZ14626.1| carbamoyl-phosphate synthase subunit L ATP-binding protein
           [Brucella melitensis bv. 1 str. Rev.1]
 gi|263093953|gb|EEZ17887.1| propionyl-COA carboxylase subunit alpha [Brucella melitensis bv. 2
           str. 63/9]
 gi|326409207|gb|ADZ66272.1| Propionyl-COA carboxylase alpha chain [Brucella melitensis M28]
 gi|326538916|gb|ADZ87131.1| propionyl-coenzyme A carboxylase, alpha polypeptide [Brucella
           melitensis M5-90]
          Length = 667

 Score = 83.6 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 45/240 (18%), Positives = 86/240 (35%), Gaps = 16/240 (6%)

Query: 34  SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDK 93
           S I +D+ +   +  +  D      +G   E+      L+   + +    + A     DK
Sbjct: 59  SYIVIDK-ILAAIKEIGADAVHPG-YGFLSENPRFAEALKAANVTFIGPPVNAIDAMGDK 116

Query: 94  MRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQS 149
           + SK++ +  GV   P  +      D        I  P +IK   GG   G+ +   D+ 
Sbjct: 117 ITSKKLAAEAGVSTVPGHMGLIEDADEAVRIAGSIGYPVMIKASAGGGGKGMRIAWNDEE 176

Query: 150 ----IPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYEL 204
                 L   ++ S    D++ IE++V     +   V+GD   +V  +   +        
Sbjct: 177 AREGFQLSRNEAKSSFGDDRIFIEKFVTQPRHIEIQVLGDQHGNVVYLGERECSIQRRNQ 236

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K             +     K +   A    +A+G       +F+ D  +R  ++LE+N 
Sbjct: 237 K----VIEEAPSPFLDEATRKAMGEQAVALAKAVGYYSAGTVEFIVDG-NRNFYFLEMNT 291


>gi|33239526|ref|NP_874468.1| acetyl-CoA carboxylase biotin carboxylase subunit [Prochlorococcus
           marinus subsp. marinus str. CCMP1375]
 gi|33237051|gb|AAP99120.1| Biotin carboxylase [Prochlorococcus marinus subsp. marinus str.
           CCMP1375]
          Length = 449

 Score = 83.2 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 79/220 (35%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+     I +   I +      +     DK  +K  +   GVP  P    
Sbjct: 78  AIHPGYGFLAENDRFAEICKDHGIVFIGPSPDSIRSMGDKSTAKSTMMGVGVPTVPGSKG 137

Query: 112 LVNRFTMDS--QHLISPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSWNHGDQ 165
           L+  +   S     +  P +IK   GG   G+ ++   +SI         +S +      
Sbjct: 138 LLANWEEASLLAKDMGYPVMIKATAGGGGRGMRLVNDQESIEELFKAAQGESEAAFGNAG 197

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           L +E+++D    +   ++ D+  +V  +            K    +     PA +   + 
Sbjct: 198 LYMEKFIDKPRHVEVQILADSLGNVVHLGERDCSIQRRHQKLLEESP---SPA-LDEQLR 253

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +   A  A ++I   G    +FL D      +++E+N 
Sbjct: 254 MRMGEAAVSAAKSINYEGAGTVEFLLDRSGN-FYFMEMNT 292


>gi|302864583|ref|YP_003833220.1| carbamoyl-phosphate synthase subunit L [Micromonospora aurantiaca
           ATCC 27029]
 gi|302567442|gb|ADL43644.1| Carbamoyl-phosphate synthase L chain ATP-binding [Micromonospora
           aurantiaca ATCC 27029]
          Length = 448

 Score = 83.2 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 86/220 (39%), Gaps = 16/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      +E   + +   G  A +   DK+ ++ ++++ GVPV P    
Sbjct: 80  AIHPGYGFLSENADFARTVEGAGLIWVGPGADAISAMGDKINARNLMAAAGVPVAPGTTE 139

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
               +D    +   I  P ++K   GG  +G+ V   + ++  +  +  ++         
Sbjct: 140 PASDLDAAVTAAAEIGYPVMVKAAAGGGGMGMGVAADEAALRTEYDKVRAFAERMFGDGS 199

Query: 166 LLIEQ-YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           +LIE+ +     +   ++G A   V  +   +        K             +  ++ 
Sbjct: 200 VLIERYFPRVRHVEVQILGLADGRVVALGERECSVQRRNQK----LVEESPSPAVSPELR 255

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +     A  A +A+  R     + L DP +++ F+LE+N 
Sbjct: 256 ERFLAAAVRAGEAVNYRNAGTVECLLDPSTQEFFFLEMNT 295


>gi|261330965|emb|CBH13951.1| hypothetical protein, conserved [Trypanosoma brucei gambiense
           DAL972]
          Length = 382

 Score = 83.2 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 40/188 (21%), Positives = 65/188 (34%), Gaps = 13/188 (6%)

Query: 96  SKQVVSSCGVPVCPSILVNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIV-IKKDQSIPL 152
            KQ+     +      ++       +   ++S P +IK + G SS+G+    K      L
Sbjct: 1   MKQIAHYFRIKTAKHAVLEAGDNIRELCSVLSFPLIIKHVSGYSSVGMDKSCKVYDMDSL 60

Query: 153 DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD-------ASLDVTEIAVPKS-DFYSYEL 204
               +         L+E++V G E T  V  D              +  P+  DF  + L
Sbjct: 61  HSRVTRFIEQYQIALVEEFVVGDEATILVCADSTQPDGIRVFPPVMVQFPEGEDFKHFHL 120

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH-QAIGCRGISRSDFLFDPLSRKVFWLEIN 263
           K+ +                 +V   A  +    +G  G  R D   D  +  V +LEIN
Sbjct: 121 KWETYEGMEWRLMPEDDPALSQVLSTARTSFMHMMGGVGYGRVDVRIDRSTHDVVFLEIN 180

Query: 264 VQPG-MTP 270
              G M P
Sbjct: 181 PNCGVMYP 188


>gi|260754930|ref|ZP_05867278.1| carbamoyl-phosphate synthase subunit L ATP-binding protein
           [Brucella abortus bv. 6 str. 870]
 gi|260883941|ref|ZP_05895555.1| propionyl-CoA carboxylase alpha subunit [Brucella abortus bv. 9
           str. C68]
 gi|260675038|gb|EEX61859.1| carbamoyl-phosphate synthase subunit L ATP-binding protein
           [Brucella abortus bv. 6 str. 870]
 gi|260873469|gb|EEX80538.1| propionyl-CoA carboxylase alpha subunit [Brucella abortus bv. 9
           str. C68]
          Length = 461

 Score = 83.2 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 45/240 (18%), Positives = 86/240 (35%), Gaps = 16/240 (6%)

Query: 34  SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDK 93
           S I +D+ +   +  +  D      +G   E+      L+   + +    + A     DK
Sbjct: 59  SYIVIDK-ILAAIKEIGADAVHPG-YGFLSENPRFAEALKAANVTFIGPPVNAIDAMGDK 116

Query: 94  MRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQS 149
           + SK++ +  GV   P  +      D        I  P +IK   GG   G+ +   D+ 
Sbjct: 117 ITSKKLAAEAGVSTVPGHMGLIEDADEAVRIAGSIGYPVMIKASAGGGGKGMRIAWNDEE 176

Query: 150 ----IPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYEL 204
                 L   ++ S    D++ IE++V     +   V+GD   +V  +   +        
Sbjct: 177 AREGFQLSRNEAKSSFGDDRIFIEKFVTQPRHIEIQVLGDQHGNVVYLGERECSIQRRNQ 236

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K             +     K +   A    +A+G       +F+ D  +R  ++LE+N 
Sbjct: 237 K----VIEEAPSPFLDEATRKAMGEQAVALAKAVGYYSAGTVEFIVDG-NRNFYFLEMNT 291


>gi|169633745|ref|YP_001707481.1| biotin carboxylase (A subunit of acetyl-CoA carboxylase)
           [Acinetobacter baumannii SDF]
 gi|169795643|ref|YP_001713436.1| biotin carboxylase (A subunit of acetyl-CoA carboxylase)
           [Acinetobacter baumannii AYE]
 gi|184158457|ref|YP_001846796.1| biotin carboxylase [Acinetobacter baumannii ACICU]
 gi|213158412|ref|YP_002319710.1| acetyl-CoA carboxylase, biotin carboxylase [Acinetobacter baumannii
           AB0057]
 gi|215483132|ref|YP_002325339.1| acetyl-CoA carboxylase, biotin carboxylase [Acinetobacter baumannii
           AB307-0294]
 gi|239501582|ref|ZP_04660892.1| acetyl-CoA carboxylase, biotin carboxylase [Acinetobacter baumannii
           AB900]
 gi|260554704|ref|ZP_05826925.1| acetyl-CoA carboxylase, biotin carboxylase [Acinetobacter baumannii
           ATCC 19606]
 gi|301512237|ref|ZP_07237474.1| biotin carboxylase [Acinetobacter baumannii AB058]
 gi|301597292|ref|ZP_07242300.1| biotin carboxylase [Acinetobacter baumannii AB059]
 gi|332852459|ref|ZP_08434198.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Acinetobacter
           baumannii 6013150]
 gi|332871339|ref|ZP_08439888.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Acinetobacter
           baumannii 6013113]
 gi|332873950|ref|ZP_08441890.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Acinetobacter
           baumannii 6014059]
 gi|169148570|emb|CAM86436.1| biotin carboxylase (A subunit of acetyl-CoA carboxylase)
           [Acinetobacter baumannii AYE]
 gi|169152537|emb|CAP01515.1| biotin carboxylase (A subunit of acetyl-CoA carboxylase)
           [Acinetobacter baumannii]
 gi|183210051|gb|ACC57449.1| Biotin carboxylase [Acinetobacter baumannii ACICU]
 gi|193077596|gb|ABO12438.2| biotin carboxylase (A subunit of acetyl-CoA carboxylase)
           [Acinetobacter baumannii ATCC 17978]
 gi|213057572|gb|ACJ42474.1| acetyl-CoA carboxylase, biotin carboxylase [Acinetobacter baumannii
           AB0057]
 gi|213987535|gb|ACJ57834.1| acetyl-CoA carboxylase, biotin carboxylase [Acinetobacter baumannii
           AB307-0294]
 gi|260411246|gb|EEX04543.1| acetyl-CoA carboxylase, biotin carboxylase [Acinetobacter baumannii
           ATCC 19606]
 gi|323518384|gb|ADX92765.1| biotin carboxylase [Acinetobacter baumannii TCDC-AB0715]
 gi|332729161|gb|EGJ60504.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Acinetobacter
           baumannii 6013150]
 gi|332731623|gb|EGJ62909.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Acinetobacter
           baumannii 6013113]
 gi|332737936|gb|EGJ68823.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Acinetobacter
           baumannii 6014059]
          Length = 456

 Score = 83.2 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 79/220 (35%), Gaps = 19/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     I+E     +         L  +K+ +   +   GVP  P    
Sbjct: 77  AIHPGYGFLSENAEFAEIVESSGFTFIGPRPEHIRLMGNKVSAIVAMKKAGVPTVPGCDH 136

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD----QSIPLDLLQSSSWNHGDQL 166
            +     +     I  P ++K   GG   G+ ++++     +S+      +  W   D +
Sbjct: 137 AVTIHNALAEAKEIGFPLIVKAAAGGGGRGMRIVERVDTLLESVQAAQRDAEMWFGDDTV 196

Query: 167 LIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIY 224
            +E+++     +   V+GD +     +           L+          PA  +P    
Sbjct: 197 YMERFLQKPRHVEVQVLGDGNGHAIHLY-----DRDCSLQRRHQKVLEEAPAPNLPEQAR 251

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            ++ +    A Q +  RG    +FLF     + F++E+N 
Sbjct: 252 ADILQACVHACQLMQYRGAGTFEFLF--EDGEFFFIEMNT 289


>gi|71743950|ref|XP_803440.1| hypothetical protein [Trypanosoma brucei TREU927]
 gi|70830770|gb|EAN76275.1| hypothetical protein, conserved [Trypanosoma brucei]
          Length = 382

 Score = 83.2 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 40/188 (21%), Positives = 65/188 (34%), Gaps = 13/188 (6%)

Query: 96  SKQVVSSCGVPVCPSILVNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIV-IKKDQSIPL 152
            KQ+     +      ++       +   ++S P +IK + G SS+G+    K      L
Sbjct: 1   MKQIAHYFRIKTAKHAVLEAGDNIRELCSVLSFPLIIKHVSGYSSVGMDKSCKVYDMDSL 60

Query: 153 DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD-------ASLDVTEIAVPKS-DFYSYEL 204
               +         L+E++V G E T  V  D              +  P+  DF  + L
Sbjct: 61  HSRVTRFIEQYQIALVEEFVVGDEATILVCADSTQPDGIRVFPPVMVQFPEGEDFKHFHL 120

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH-QAIGCRGISRSDFLFDPLSRKVFWLEIN 263
           K+ +                 +V   A  +    +G  G  R D   D  +  V +LEIN
Sbjct: 121 KWETYEGMEWRLMPEDDPALSQVLSTARTSFMHMMGGVGYGRVDVRIDRSTHDVVFLEIN 180

Query: 264 VQPG-MTP 270
              G M P
Sbjct: 181 PNCGVMYP 188


>gi|227535062|ref|ZP_03965111.1| carbamoyl-phosphate synthase large chain (carbamoyl-phosphate
           synthetase ammonia chain) [Lactobacillus paracasei
           subsp. paracasei ATCC 25302]
 gi|227187277|gb|EEI67344.1| carbamoyl-phosphate synthase large chain (carbamoyl-phosphate
           synthetase ammonia chain) [Lactobacillus paracasei
           subsp. paracasei ATCC 25302]
          Length = 1060

 Score = 83.2 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 52/286 (18%), Positives = 101/286 (35%), Gaps = 33/286 (11%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI---------DVD------------RSVGLV 45
           G ++E + S   G     AL + G++V  +         D +              V  +
Sbjct: 21  GQAAEFDYS---GTQACLALREEGYEVVLVNSNPATIMTDTEIADRVYIEPLTVEFVSQI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           L    PD     + G  G +  ++     IL+ L I    + + A   + D+   K ++ 
Sbjct: 78  LRKELPDAILPTIGGQIGLNLAMKLSNTGILDELGIELLGTKLTAIDQAEDRELFKNLMQ 137

Query: 102 SCGVPVCPSILVNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
               PV  S + N      Q    I  P +I+P       G  +   ++ +        +
Sbjct: 138 KLHEPVPESAIANNIEEAQQFADKIGFPVIIRPAFTMGGTGGGIANNEKELAEIAENGLN 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   Q+L+E+ + G  E+   VM DA+     I V   + +     ++  +        
Sbjct: 198 LSPVTQVLVERSIAGYKEVEFEVMRDAADSA--IVVCNMENFDPVGVHTGDSMVFAPTQT 255

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +     + ++  A    +A+   G     F  D  S K + +E+N 
Sbjct: 256 LTDKEVQMLRDAALKIIRALKIEGGCNVQFALDRNSFKYYVIEVNP 301



 Score = 77.5 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 44/266 (16%), Positives = 90/266 (33%), Gaps = 34/266 (12%)

Query: 24  SALEDAGFKVSQ-------IDVDRSVGLVLAHLKPDL--AFNVLHGNFGEDGLVQ----- 69
            A++ AG++          +  D S+   L      L    NV+     E  +VQ     
Sbjct: 579 KAIQKAGYEAIIMNSNPETVSTDFSIADKLYFEPLTLEDVLNVIDLEQPEGVIVQFGGQT 638

Query: 70  --AILELL---EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--FTMDSQH 122
              + E L    I    + +     + D+    QV+ S  +P             +    
Sbjct: 639 AINLAEPLANRGIKILGTSVEDLNRAEDRDLFDQVIKSLKLPQPEGGTATDKAGALAVAD 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + ++     +   + ++ S +H   +LI+ Y+ G E     +
Sbjct: 699 KIGYPVLVRPSYVLGGRAMEIVHDATELDNYIDRAVSVSHDHPVLIDHYLVGKECEVDCI 758

Query: 183 GDA---SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAI 238
            D     L      + ++  +S        +S  V P +    DI  ++        + +
Sbjct: 759 SDGDTVVLPGIMEHIERAGIHS-------GDSMAVYPPQTFSQDIIDQITDATIKLSRTL 811

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINV 264
            C G+    F+      K + +E+N 
Sbjct: 812 NCIGLMNVQFIIH--DGKAYVIEVNP 835


>gi|225573666|ref|ZP_03782421.1| hypothetical protein RUMHYD_01862 [Blautia hydrogenotrophica DSM
           10507]
 gi|225038959|gb|EEG49205.1| hypothetical protein RUMHYD_01862 [Blautia hydrogenotrophica DSM
           10507]
          Length = 447

 Score = 83.2 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 78/221 (35%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  FG   E+     + +   + +            +K  +K  +   GVPV P    
Sbjct: 77  AIHPGFGFLSENSKFVEMCQQCNVTFIGPSAELIQKMGNKSEAKNTMRKAGVPVVPGTKE 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS-----SWNHGD 164
            +      +++   I  P +IK   GG   G+ + + +         +      ++   +
Sbjct: 137 PVYDPESALEAAREIGFPVMIKASSGGGGKGMRIAESEAEFLEHFQMAQQESVNAFG-DN 195

Query: 165 QLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            + +E+YV     +   +M D   +V  +            K             +  ++
Sbjct: 196 TMYLERYVRKPRHVEVQIMADKFGNVVHLGERDCSIQRRHQKMI----EESPCVALTEEL 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +++ + A  A +A+G       +FL D    + F++E+N 
Sbjct: 252 RQKMGQTAVRAAKAVGYENAGTIEFLLDES-GEFFFMEMNT 291


>gi|219853735|ref|YP_002470857.1| hypothetical protein CKR_0392 [Clostridium kluyveri NBRC 12016]
 gi|219567459|dbj|BAH05443.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 1149

 Score = 83.2 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 41/242 (16%), Positives = 88/242 (36%), Gaps = 22/242 (9%)

Query: 35  QIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSM 91
            +D+D  + + L   K D     +H  +G   E+  +    E   I +         +  
Sbjct: 67  YLDIDEIINIALKK-KVD----AIHPGYGFLAENPELARKCEQAGIEFIGPTSSMMEMLG 121

Query: 92  DKMRSKQVVSSCGVPVCPSIL----VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147
           DK++SK V     VP  P I          ++       P ++K   GG   G+ +++++
Sbjct: 122 DKIKSKIVAKKADVPTIPGIQEPIKTEEQALEFARYCGYPVMVKAAAGGGGRGMRIVREE 181

Query: 148 QSIPLDLLQSSSWNHG----DQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSY 202
           + +      + S +      + + IE+Y++    +   ++GD   +V  +          
Sbjct: 182 KDLLESYNSAKSESMKAFGSEDIFIEKYIESPKHIEVQILGDKHGNVVHLYERDCSIQRR 241

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
             K             +  +   E+   A    +++G R     +FL D      +++E+
Sbjct: 242 HQK----VIEFTPSIALSDEKRNEICEDALKIARSVGYRSAGTLEFLVDKHGNH-YFIEM 296

Query: 263 NV 264
           N 
Sbjct: 297 NT 298


>gi|218132926|ref|ZP_03461730.1| hypothetical protein BACPEC_00787 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991799|gb|EEC57803.1| hypothetical protein BACPEC_00787 [Bacteroides pectinophilus ATCC
           43243]
          Length = 446

 Score = 83.2 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 75/221 (33%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  FG   E+     + E   I +            +K  +K  + + GVPV P    
Sbjct: 77  AIHPGFGFLSENSRFATLCEKCNIKFIGPDAALIESLGNKSEAKNTMQAAGVPVIPGTKK 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS-----SSWNHGD 164
            +   +  +        P ++K   GG   G+ V+        + L +     S++    
Sbjct: 137 PVYDWQEGLKFADEAGYPVIVKAALGGGGKGMRVVSSHDEFEHEFLTAQRESESAFG-DG 195

Query: 165 QLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            + IE+Y+ +   +   ++ D   +V  +            K             +   +
Sbjct: 196 TMYIEKYIVNPRHIEFQILADEHGNVIHLGERDCSIQRRHQK----LIEESPSVAVDAGL 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            K +   A  A + +G +     +FL D      +++E+N 
Sbjct: 252 RKRMGETAVRAAKTVGYKNAGTIEFLLDK-DNNFYFMEMNT 291


>gi|291562867|emb|CBL41683.1| acetyl-CoA carboxylase, biotin carboxylase [butyrate-producing
           bacterium SS3/4]
          Length = 451

 Score = 83.2 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 83/220 (37%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  FG   E+     + E   I +            +K  +++ + + GVPV P    
Sbjct: 77  AIHPGFGFLSENARFAELCEKCNIRFIGPSAEIINKMGNKSEARKTMMAAGVPVVPGSKE 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN----HGDQ 165
            +      + +   +  P +IK   GG   G+ V + ++    + L +   +      + 
Sbjct: 137 PVYTVEEGLKTAKEVGFPVMIKASSGGGGKGMRVSRSEEDFEANFLNAQMESVKGFSDNT 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE++V+    +   ++GD   +V  +            K           A I  ++ 
Sbjct: 197 MYIERFVENPRHIEFQILGDRYGNVVHLGERDCSIQRRHQKVL----EESPSAAISGELR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K++   A  A +A+G       +FL D   +  +++E+N 
Sbjct: 253 KKMGETAVRAAKAVGYENAGTIEFLLDK-DKNFYFMEMNT 291


>gi|82592710|gb|ABB84526.1| unknown [Myxococcus xanthus]
          Length = 472

 Score = 83.2 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 35/219 (15%), Positives = 79/219 (36%), Gaps = 14/219 (6%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+G          + +      A A   DK +++++VS+ GVPV P    
Sbjct: 99  AIHPGYGFLSENGEFAQACADAGLIFVGPPPEAMARMKDKSQARKLVSAAGVPVVPGSEG 158

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-----SSSWNHGD 164
            +      +     I  P ++K   GG  +G+ V +    +     Q      +++    
Sbjct: 159 VVPDVASALAEAERIGYPVLVKAASGGGGIGMAVARNAAEMEKVYRQCTDRAKAAFGKEG 218

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             +   +     +   ++GD    +      +        K      + +       ++ 
Sbjct: 219 VYVERYFPAPRHIEVQILGDQHGHLIHCLERECSIQRRHQKVVEEAPSVLFADGRNPELA 278

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
           +++   A  A +A G       +FL+     +V+++E+N
Sbjct: 279 QKLFTAAVAAAKAFGYANAGTVEFLY--SDGEVYFIEMN 315


>gi|28869923|ref|NP_792542.1| biotin carboxylase/biotin-containing subunit [Pseudomonas syringae
           pv. tomato str. DC3000]
 gi|28853168|gb|AAO56237.1| biotin carboxylase/biotin-containing subunit [Pseudomonas syringae
           pv. tomato str. DC3000]
          Length = 649

 Score = 83.2 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 78/221 (35%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      +E   + +      A      K  +K ++   GVP+ P    
Sbjct: 81  AIHPGYGFLSENADFARAIEAAGLVFLGPPASAIDAMGSKSAAKSLMEQAGVPLVPGYHG 140

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
               +D    +   I  P ++K   GG   G+ V+++   +   L  +           +
Sbjct: 141 AAQDIDTFHAAAERIGYPVLLKATAGGGGKGMKVVEQASEMAEALASAQREALSSFGDAR 200

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           +L+E+YV     +   V  D       +            K          PA  +  ++
Sbjct: 201 MLVEKYVLSPRHVEIQVFADQQGHCLYLNERDCSIQRRHQK-----VVEEAPAPGLTPEL 255

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            K +   A  A QAIG  G    +FL D    + F++E+N 
Sbjct: 256 RKAMGEAAVKAAQAIGYVGAGTVEFLLDAR-GEFFFMEMNT 295


>gi|116494938|ref|YP_806672.1| carbamoylphosphate synthase large subunit [Lactobacillus casei ATCC
           334]
 gi|122263644|sp|Q038Z2|CARB_LACC3 RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|116105088|gb|ABJ70230.1| carbamoyl-phosphate synthase large subunit [Lactobacillus casei
           ATCC 334]
          Length = 1060

 Score = 83.2 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 52/286 (18%), Positives = 101/286 (35%), Gaps = 33/286 (11%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI---------DVD------------RSVGLV 45
           G ++E + S   G     AL + G++V  +         D +              V  +
Sbjct: 21  GQAAEFDYS---GTQACLALREEGYEVVLVNSNPATIMTDTEIADRVYIEPLTVEFVSQI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           L    PD     + G  G +  ++     IL+ L I    + + A   + D+   K ++ 
Sbjct: 78  LRKELPDAILPTIGGQIGLNLAMKLSNTGILDELGIELLGTKLTAIDQAEDRELFKNLMQ 137

Query: 102 SCGVPVCPSILVNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
               PV  S + N      Q    I  P +I+P       G  +   ++ +        +
Sbjct: 138 KLHEPVPESAIANNIEEAQQFADKIGFPVIIRPAFTMGGTGGGIANNEKELAEIAENGLN 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   Q+L+E+ + G  E+   VM DA+     I V   + +     ++  +        
Sbjct: 198 LSPVTQVLVERSIAGYKEVEFEVMRDAADSA--IVVCNMENFDPVGVHTGDSMVFAPTQT 255

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +     + ++  A    +A+   G     F  D  S K + +E+N 
Sbjct: 256 LTDKEVQMLRDAALKIIRALKIEGGCNVQFALDRNSFKYYVIEVNP 301



 Score = 75.9 bits (186), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 44/266 (16%), Positives = 90/266 (33%), Gaps = 34/266 (12%)

Query: 24  SALEDAGFKVSQ-------IDVDRSVGLVLAHLKPDL--AFNVLHGNFGEDGLVQ----- 69
            A++ AG++          +  D S+   L      L    NV+     E  +VQ     
Sbjct: 579 KAIQKAGYEAIIMNSNPETVSTDFSIADKLYFEPLTLEDVLNVIDLEQPEGVIVQFGGQT 638

Query: 70  --AILELL---EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--FTMDSQH 122
              + E L    I    + +     + D+    QV+ S  +P             +    
Sbjct: 639 AINLAEPLANRGIKILGTSVEDLNRAEDRDLFDQVIKSLKLPQPEGGTATDKAGALAVAD 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + ++     +   + ++ S +H   +LI+ Y+ G E     +
Sbjct: 699 KIGYPVLVRPSYVLGGRAMEIVHDATELDNYIDRAVSVSHDHPVLIDHYLVGKECEVDCI 758

Query: 183 GDA---SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAI 238
            D     L      + ++  +S        +S  V P +    DI  ++        + +
Sbjct: 759 SDGDTVVLPGIMEHIERAGIHS-------GDSMAVYPPQTFSQDIIDQITDATIKLSRTL 811

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINV 264
            C G+    F+      K + +E+N 
Sbjct: 812 NCIGLMNVQFIIHA--GKAYVIEVNP 835


>gi|322508781|gb|ADX04235.1| accC [Acinetobacter baumannii 1656-2]
          Length = 456

 Score = 83.2 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 79/220 (35%), Gaps = 19/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     I+E     +         L  +K+ +   +   GVP  P    
Sbjct: 77  AIHPGYGFLSENAEFAEIVESSGFTFIGPRPEHIRLMGNKVSAIVAMKKAGVPTVPGCDH 136

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD----QSIPLDLLQSSSWNHGDQL 166
            +     +     I  P ++K   GG   G+ ++++     +S+      +  W   D +
Sbjct: 137 AVTIHNALAEAKEIGFPLIVKAAAGGGGRGMRIVERVDTLLESVQAAQRDAEMWFGDDTV 196

Query: 167 LIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIY 224
            +E+++     +   V+GD +     +           L+          PA  +P    
Sbjct: 197 YMERFLQKPRHVEVQVLGDGNGHAIHLY-----DRDCSLQRRHQKVLEEAPAPNLPEQAR 251

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            ++ +    A Q +  RG    +FLF     + F++E+N 
Sbjct: 252 ADILQACVHACQLMQYRGAGTFEFLF--EDGEFFFIEMNT 289


>gi|146276729|ref|YP_001166888.1| pyruvate carboxylase [Rhodobacter sphaeroides ATCC 17025]
 gi|145554970|gb|ABP69583.1| pyruvate carboxylase [Rhodobacter sphaeroides ATCC 17025]
          Length = 1154

 Score = 83.2 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 76/221 (34%), Gaps = 18/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+           I +            DK  +++V  + GVPV P+  V
Sbjct: 80  AIHPGYGLLSENPDFVEACTEAGIVFIGPKAETMRALGDKASARRVAMAAGVPVIPATEV 139

Query: 114 NRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-----SSSWNHGD 164
               MD        I  P ++K   GG   G+  I  +  +   + +      +++ +G+
Sbjct: 140 LGDDMDETRRQAAEIGYPLMLKASWGGGGRGMRPINSEAELADKVREGRREAEAAFGNGE 199

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
             L +  +    +   ++GD    +  +            K          PA  +  D 
Sbjct: 200 GYLEKMILRARHVEVQILGDKYGSIYHLYERDCTVQRRNQK-----VVERAPAPYLTDDQ 254

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             E+  L       +  +     +FL D  + K +++E+N 
Sbjct: 255 RAEICELGRRICAHVNYKCAGTVEFLMDMDTEKFYFIEVNP 295


>gi|212716690|ref|ZP_03324818.1| hypothetical protein BIFCAT_01624 [Bifidobacterium catenulatum DSM
           16992]
 gi|212660394|gb|EEB20969.1| hypothetical protein BIFCAT_01624 [Bifidobacterium catenulatum DSM
           16992]
          Length = 631

 Score = 83.2 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 38/198 (19%), Positives = 78/198 (39%), Gaps = 14/198 (7%)

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP----SILVNRFTMDSQHLISPPYVI 130
               +      A     DK+ +++V +   VP  P    SI   R  +D  H    P ++
Sbjct: 101 AGAAWVGPNPEALVDLGDKITARRVATFAKVPPVPGISQSISDMRLLLDFAHTHGYPLML 160

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD--QLLIEQYVD-GIELTCGVMGDASL 187
           K   GG   GI ++  D  +    +   +   GD  +  +E+++D G  +      D+  
Sbjct: 161 KRTDGGGGRGITLVHNDDELRGFYMNHDALQGGDLNEYFVERFIDKGRHVETQCGRDSHG 220

Query: 188 DVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRS 246
           + T  +          ++  +       PA  +P D+  +++  +    +A+   G+   
Sbjct: 221 NFTVYST-----RDCSVQRRNQKLVEEAPAPFLPSDVTDQLETYSRRLFEAVDYEGLGTC 275

Query: 247 DFLFDPLSRKVFWLEINV 264
           +F+      KV++LE+N 
Sbjct: 276 EFMVTEQ-GKVYFLEVNP 292


>gi|327403248|ref|YP_004344086.1| acetyl-CoA carboxylase, biotin carboxylase [Fluviicola taffensis
           DSM 16823]
 gi|327318756|gb|AEA43248.1| acetyl-CoA carboxylase, biotin carboxylase [Fluviicola taffensis
           DSM 16823]
          Length = 444

 Score = 83.2 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 34/221 (15%), Positives = 87/221 (39%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     + +   I +  +     A   DK  +K  + + GVP  P    
Sbjct: 77  AIHPGYGFLSENEKFSRVCQEHNIKFIGALPEQIAGMGDKATAKATMIAAGVPCIPGSEG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS-----SSWNHGD 164
            +        +  ++  P ++K   GG   G+ ++ K++ +      +     +++ +  
Sbjct: 137 LLADVEDARKTALVVRYPVILKATAGGGGKGMRIVWKEEDLEAAWDSARQEAGAAFGNDG 196

Query: 165 QLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            + +E+Y++    +   + GD   +V  ++           K             +  ++
Sbjct: 197 -IYMEKYIEEPRHIEIQIAGDQYGNVCHLSERDCSIQRRHQK----LVEETPSPFMTDEL 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +++ + A  A +A+   G+   +FL D  +R  +++E+N 
Sbjct: 252 REKMGQAAIKAAKAVNYEGVGTVEFLVDK-NRDFYFMEMNT 291


>gi|301066501|ref|YP_003788524.1| carbamoylphosphate synthase large subunit [Lactobacillus casei str.
           Zhang]
 gi|300438908|gb|ADK18674.1| Carbamoylphosphate synthase large subunit [Lactobacillus casei str.
           Zhang]
          Length = 1060

 Score = 83.2 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 52/286 (18%), Positives = 101/286 (35%), Gaps = 33/286 (11%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI---------DVD------------RSVGLV 45
           G ++E + S   G     AL + G++V  +         D +              V  +
Sbjct: 21  GQAAEFDYS---GTQACLALREEGYEVVLVNSNPATIMTDTEIADRVYIEPLTVEFVSQI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           L    PD     + G  G +  ++     IL+ L I    + + A   + D+   K ++ 
Sbjct: 78  LRKELPDAILPTIGGQIGLNLAMKLSNTGILDELGIELLGTKLTAIDQAEDRELFKNLMQ 137

Query: 102 SCGVPVCPSILVNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
               PV  S + N      Q    I  P +I+P       G  +   ++ +        +
Sbjct: 138 KLHEPVPESAIANNIEEAQQFADKIGFPVIIRPAFTMGGTGGGIANNEKELAEIAENGLN 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   Q+L+E+ + G  E+   VM DA+     I V   + +     ++  +        
Sbjct: 198 LSPVTQVLVERSIAGYKEVEFEVMRDAADSA--IVVCNMENFDPVGVHTGDSMVFAPTQT 255

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +     + ++  A    +A+   G     F  D  S K + +E+N 
Sbjct: 256 LTDKEVQMLRDAALKIIRALKIEGGCNVQFALDRNSFKYYVIEVNP 301



 Score = 77.5 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 44/266 (16%), Positives = 90/266 (33%), Gaps = 34/266 (12%)

Query: 24  SALEDAGFKVSQ-------IDVDRSVGLVLAHLKPDL--AFNVLHGNFGEDGLVQ----- 69
            A++ AG++          +  D S+   L      L    NV+     E  +VQ     
Sbjct: 579 KAIQKAGYEAIIMNSNPETVSTDFSIADKLYFEPLTLEDVLNVIDLEQPEGVIVQFGGQT 638

Query: 70  --AILELL---EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--FTMDSQH 122
              + E L    I    + +     + D+    QV+ S  +P             +    
Sbjct: 639 AINLAEPLANRGIKILGTSVEDLNRAEDRDLFDQVIKSLKLPQPEGGTATDKAGALAVAD 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + ++     +   + ++ S +H   +LI+ Y+ G E     +
Sbjct: 699 KIGYPVLVRPSYVLGGRAMEIVHDATELDNYIDRAVSVSHDHPVLIDHYLVGKECEVDCI 758

Query: 183 GDA---SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAI 238
            D     L      + ++  +S        +S  V P +    DI  ++        + +
Sbjct: 759 SDGDTVVLPGIMEHIERAGIHS-------GDSMAVYPPQTFSQDIIDQITDATIKLSRTL 811

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINV 264
            C G+    F+      K + +E+N 
Sbjct: 812 NCIGLMNVQFIIH--DGKAYVIEVNP 835


>gi|168183675|ref|ZP_02618339.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Clostridium
           botulinum Bf]
 gi|237797054|ref|YP_002864606.1| biotin carboxylase [Clostridium botulinum Ba4 str. 657]
 gi|182673266|gb|EDT85227.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Clostridium
           botulinum Bf]
 gi|229263687|gb|ACQ54720.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Clostridium
           botulinum Ba4 str. 657]
          Length = 448

 Score = 83.2 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 82/220 (37%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  FG   E+     + +   I +            +K  ++ ++   GVPV P    
Sbjct: 77  AIHPGFGFLSENSKFANMCKDCNIVFIGPDSETIDKMGNKSNARDIMIRAGVPVIPGSNG 136

Query: 111 ILVNRFT-MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
           ++ N    ++    I  P V+K   GG   GI ++   +++      + S        D 
Sbjct: 137 VIHNEEEALNIADEIGYPVVVKASAGGGGRGIRIVHSKENMIKAFNTAKSEAKGAFGDDS 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+++     +   ++GD   ++  +            K            ++  ++ 
Sbjct: 197 MYVEKFIKNPRHIEFQILGDNYGNIVHLGERDCSLQRRNQKVL----EEAPSPRMNEELR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K +  +A  A +A+G +     +FL D      +++E+N 
Sbjct: 253 KRMGDVATKAAKAVGYKNAGTIEFLLDE-DGSFYFMEMNT 291


>gi|146283541|ref|YP_001173694.1| acetyl-CoA carboxylase, biotin carboxylase, putative [Pseudomonas
           stutzeri A1501]
 gi|145571746|gb|ABP80852.1| acetyl-CoA carboxylase, biotin carboxylase, putative [Pseudomonas
           stutzeri A1501]
          Length = 636

 Score = 83.2 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 80/221 (36%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      +E   + +      A      K  +K ++   GVP+ P    
Sbjct: 80  AIHPGYGFLSENAEFARAIEQAGLIFLGPPASAIDAMGSKSAAKALMEEAGVPLVPGYHG 139

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
               ++    +   I  P ++K   GG   G+ V++++  +   L  +           +
Sbjct: 140 EAQDVETFRAAAEKIGYPVLLKATAGGGGKGMKVVEREADLAEALASAQREAQSSFGDSR 199

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           +L+E+YV     +   V  D   +   +            K          PA  +  ++
Sbjct: 200 MLVEKYVLKPRHVEIQVFADQHGNCLYLNERDCSIQRRHQK-----VVEEAPAPGLSPEL 254

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +   A  A +AIG  G    +FL D    + F++E+N 
Sbjct: 255 RRAMGEAAVKAAKAIGYVGAGTVEFLLDAR-GEFFFMEMNT 294


>gi|271966689|ref|YP_003340885.1| carbamoyl-phosphate synthase L chain, ATP- binding protein
           [Streptosporangium roseum DSM 43021]
 gi|270509864|gb|ACZ88142.1| carbamoyl-phosphate synthase L chain, ATP- binding protein
           [Streptosporangium roseum DSM 43021]
          Length = 1829

 Score = 83.2 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 39/214 (18%), Positives = 72/214 (33%), Gaps = 13/214 (6%)

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVNR 115
           G   ED     +   + + +      A     DK+ SK +    GVPV P     +    
Sbjct: 88  GFVAEDPAFADLCAEIGVTFVGPSAEAMRKLGDKIGSKLIAEKVGVPVAPWSRGPVETLE 147

Query: 116 FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQLLIEQY 171
               +   I  P ++K   GG   GI ++     +         ++        + +E+ 
Sbjct: 148 DAKAAADRIGYPLMLKATAGGGGRGIRMVSNADELTQAYELTRREAERAFGSGVVFLERL 207

Query: 172 VDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
           V G   +   V+ D       + V          K    +++ V    +      E++  
Sbjct: 208 VTGARHVEVQVIADGQGTAWALGVRDCSVQRRNQKIIEESASPV----LNAKQVAELKAS 263

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           A     A+  +G    +FL+ P  R   +LE+N 
Sbjct: 264 AERLVLAVDYQGAGTIEFLYHPGERLFAFLEVNT 297


>gi|268319404|ref|YP_003293060.1| carbamoyl-phosphate synthase large chain [Lactobacillus johnsonii
           FI9785]
 gi|262397779|emb|CAX66793.1| carbamoyl-phosphate synthase large chain [Lactobacillus johnsonii
           FI9785]
          Length = 1062

 Score = 83.2 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 43/297 (14%), Positives = 95/297 (31%), Gaps = 38/297 (12%)

Query: 22  CASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ--- 69
           C  AL+  G++   I         D   S  L    L  +   NV      E  +VQ   
Sbjct: 577 CVKALQKMGYEAIVINSNPETVSTDFSISDKLYFEPLTLEDVLNVCDLEKPEGIIVQFGG 636

Query: 70  -------AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDS 120
                  A L+   I    + +     + D+    Q++    +     +        + +
Sbjct: 637 QTSINLAAGLKDHGIKILGTSVKDLNRAEDRELFDQIIKKLKLNQPKGLTATTHEGVIKA 696

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P +++P        + ++     +   L           +L++ Y+DG E    
Sbjct: 697 AEELGYPVLVRPSYVLGGKAMEIVYNKSELEEYLHDHVDIAADHPILVDDYLDGRECDVD 756

Query: 181 VMGDAS---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQ 236
            + D     L      +  +  +S        +S  V P      ++  ++  +      
Sbjct: 757 AICDGQDVLLPGIMEHIEHAGVHS-------GDSMAVYPPQNFTDEVKDKIMDVTRKLAL 809

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            + C GI    F+    + +V+ +E+N +   T     P ++   G    ++   ++
Sbjct: 810 TLNCVGIMNIQFIVR--NGEVYVIEVNPRASRT----VPFLSKITGIEMAQVATRVI 860



 Score = 76.7 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 48/289 (16%), Positives = 99/289 (34%), Gaps = 39/289 (13%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI---------DVD------------RSVGLV 45
           G ++E + S   G     AL + G++V  +         D               S+  +
Sbjct: 21  GQAAEFDYS---GTQACLALREEGYEVVLVNSNPATIMTDTTIADKVYIEPLTVESISRI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +    PD     L G  G +  +      IL+ L I    + + +   + D+ + K++  
Sbjct: 78  IRQEYPDAILPTLGGQVGLNMALSLAKTGILDELNIELLGTRLSSIEQAEDREKFKELCK 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G PV PS  VN    +++    I  P +++P       G  +    + +         
Sbjct: 138 ELGEPVPPSTTVNTVEESLEFGDRIGYPIIVRPAFTMGGTGGGICNNHEELAKIAKNGLE 197

Query: 160 WNHGDQLLIEQYVDG---IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216
            +   + LIE+ + G   +E       D +  +            +     + +S    P
Sbjct: 198 LSPVTECLIEKSIAGYKEVEFEVMRDHDDNAMIVCCMENFDPVGIH-----TGDSIVFSP 252

Query: 217 AK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           ++ +    Y+ ++  +    +A+   G        DP S     +E+N 
Sbjct: 253 SQTLSDKEYQMLRDCSLRLIRALKIEGGCNVQLALDPNSFDYDVIEVNP 301


>gi|227328912|ref|ZP_03832936.1| putative allophanate hydrolase [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 1201

 Score = 83.2 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 37/234 (15%), Positives = 77/234 (32%), Gaps = 27/234 (11%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---FTMDSQHLISPPYVIKP 132
           +I +         +   K  ++ +     VP+     +       + +   I  P ++K 
Sbjct: 99  QIAFVGPTPQQLRVFGLKHTARALAKQHNVPLLEGTELLENIDAALRAAEAIGYPVMLKS 158

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQLLIEQYVD-GIELTCGVMGDASL 187
             GG  +G+ V      +                   + IE+Y++    L   + GD   
Sbjct: 159 TAGGGGIGMRVCYSTTELSDAFETVKRLGQNNFSDAGVFIEKYIERARHLEVQIFGDGQG 218

Query: 188 DVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           DV  + V          K             +P  +   +   A    QA+  R     +
Sbjct: 219 DVLALGVRDCSVQRRNQK----VIEETPAPNLPDGVADALCAAAISLAQAVNYRSAGTVE 274

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR----ELLLWMVEDAS 297
           F++D  + + ++LE+N             +    G + +    +L+ WM+E A+
Sbjct: 275 FVYDSATDRFYFLEVNT-----------RLQVEHGVTEQVWGVDLVRWMIELAA 317


>gi|114769518|ref|ZP_01447144.1| pyruvate carboxylase [alpha proteobacterium HTCC2255]
 gi|114550435|gb|EAU53316.1| pyruvate carboxylase [alpha proteobacterium HTCC2255]
          Length = 1148

 Score = 83.2 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 79/221 (35%), Gaps = 18/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       E   I +            DK  +++V    GVPV P+  V
Sbjct: 80  AIHPGYGLLSENPDFVDACEEAGIKFIGPKAETMRKLGDKASARRVAMEAGVPVVPATEV 139

Query: 114 NRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-----SSSWNHGD 164
               M+        +  P+++K   GG   G+  I     +   +L+      +++ +G+
Sbjct: 140 LPDDMNKVRQMAEAVGYPFMLKASWGGGGRGMRPIMNASELEEKVLEGRREAEAAFGNGE 199

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
             L         +   ++GD+  ++  +           ++  +       PA  +  + 
Sbjct: 200 GYLERLVQRARHVEVQILGDSFGEIYHLYE-----RDCSVQRRNQKVVERAPAPYLTEEQ 254

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             E+  L       +G       +FL D  + + F++E+N 
Sbjct: 255 RSEICSLGRKICAHVGYECAGTVEFLMDMDTEEFFFIEVNP 295


>gi|255308623|ref|ZP_05352794.1| carbamoyl phosphate synthase large subunit [Clostridium difficile
           ATCC 43255]
          Length = 1068

 Score = 83.2 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 39/288 (13%), Positives = 98/288 (34%), Gaps = 30/288 (10%)

Query: 22  CASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ--- 69
           C  +L   G +   +         D D S  L    L  +   N++     E  ++Q   
Sbjct: 580 CVKSLRKMGIETIIVNNNPETVSTDFDTSDKLYFEPLTEEEVLNIIEKEKPEGVILQFGG 639

Query: 70  -------AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV--PVCPSILVNRFTMDS 120
                    L    IP   +       + D+ +   ++    +  P    +      ++ 
Sbjct: 640 QTAIKLAKFLHEKNIPILGTDFRDIDAAEDREKFDDLLERLDINRPKGKGVWTTNEGVEI 699

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P +++P       G+ +   ++ +   L  +   +H + +LI++Y+ G E+   
Sbjct: 700 AKELGYPVLVRPSYVLGGQGMEITYNEEKLIQYLDDAFDRDHKNPVLIDKYLTGREIEVD 759

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
            + D    +    +   +       +S  ++T      I  +I +++          +  
Sbjct: 760 AICDKEDILIPGIMGHLERAGV---HSGDSTTMYPSQNISDEIKEKIVEYTKKIALDLNV 816

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
            G+    F+      +++ +E+N +   T     P ++  +G    +L
Sbjct: 817 LGMVNIQFI--EFQNELYIIEVNPRASRT----VPYISKVSGVPIVDL 858



 Score = 62.8 bits (152), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 49/289 (16%), Positives = 106/289 (36%), Gaps = 39/289 (13%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQID-------VDRSVGL--------------V 45
           G ++E + S   G     AL++ G +V  ++        D+ +                +
Sbjct: 21  GQAAEFDYS---GTQACQALKEEGIEVVLVNSNPATIMTDKEIADKIYIEPLTIEFIEKI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDG-------LVQAILELLEIPYTHSGILASALSMDKMRSKQ 98
           +   +PD   ++L G  G+ G           IL+   +    + I +     D+   ++
Sbjct: 78  IEKERPD---SLLAGMGGQTGLNLAVELHDAGILDKYNVKVIGTSIESIKKGEDRDLFRE 134

Query: 99  VVSSCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
           V+     PV  S +V      ++  + I  P V++P       G  +   ++ +   L  
Sbjct: 135 VMKEINQPVIVSDIVTNLEAGLEFANKIGYPVVVRPAYTLGGTGGGIADTEEELREILSH 194

Query: 157 SSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215
               +   Q+L+E+ + G  E+   VM D + +   I V   +       ++  +     
Sbjct: 195 GLQLSPVGQVLLEKSIKGWKEIEYEVMRDGNGN--CITVCNMENVDPVGVHTGDSIVVAP 252

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              +  + Y+ +++ +     AI  +G        +P S +   +EIN 
Sbjct: 253 SQTLSDEEYQLLRKASIDIINAIEVQGGCNVQIALNPHSLEYAIIEINP 301


>gi|113477178|ref|YP_723239.1| acetyl-CoA carboxylase biotin carboxylase subunit [Trichodesmium
           erythraeum IMS101]
 gi|110168226|gb|ABG52766.1| acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha /
           biotin carboxylase [Trichodesmium erythraeum IMS101]
          Length = 451

 Score = 83.2 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 75/220 (34%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     I    +I +            DK  +K+ +   GVP  P    
Sbjct: 78  AIHPGYGFLAENARFAEICADHDITFIGPSPAGIRAMGDKSTAKETMQKAGVPTVPGSDG 137

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
            +      +     I  P +IK   GG   G+ +++    +      +            
Sbjct: 138 LLTDENEAVAIAEKIGFPLIIKATAGGGGRGMRLVRHPNDLSKLFQAAQGEAEAAFGNPG 197

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E++++    +   ++ D+  +V  +            K             +   + 
Sbjct: 198 VYMEKFIERPRHIEFQILADSYGNVIHLGERDCSIQRRHQKLL----EEAPSPALDPKLR 253

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +++   A  A ++I   G    +FL D  S K +++E+N 
Sbjct: 254 QKMGEAAVKAAKSINYLGAGTVEFLLD-QSGKFYFMEMNT 292


>gi|327396438|dbj|BAK13860.1| urea amidolyase DUR1,2 [Pantoea ananatis AJ13355]
          Length = 1205

 Score = 83.2 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 31/204 (15%), Positives = 68/204 (33%), Gaps = 14/204 (6%)

Query: 70  AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---QHLISP 126
           A  E   I +             K R++++ +  GVP+ P   +     D+      I  
Sbjct: 93  AACEEAGIVFVGPTAQQIGEFGLKHRARELAAHAGVPMTPGTPLLDSLDDALAAASHIGY 152

Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQLLIEQYVD-GIELTCGV 181
           P ++K   GG  +G+      +++             +     + +E+ +D    +   +
Sbjct: 153 PVMLKSTAGGGGIGLTRCADAEALRHAWESVRRLGEQFFSDAGVFLERCIDHARHVEVQI 212

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGC 240
            GD    V  +           L+  +       PA  +P      +   A    + +  
Sbjct: 213 FGDGKGTVVALGE-----RDCSLQRRNQKVVEETPAPCLPAATRDALLASAVRLGEVVNY 267

Query: 241 RGISRSDFLFDPLSRKVFWLEINV 264
           R     ++++D      ++LE+N 
Sbjct: 268 RSAGTVEYIYDAQQDAFYFLEVNT 291


>gi|156405054|ref|XP_001640547.1| predicted protein [Nematostella vectensis]
 gi|156227682|gb|EDO48484.1| predicted protein [Nematostella vectensis]
          Length = 1200

 Score = 83.2 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 77/220 (35%), Gaps = 19/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E            + +         +  DK+ ++++  + GVPV P    
Sbjct: 126 AIHPGYGFLSERADFAHACTKSGVIFIGPSPQVVHMMGDKLEARKMAINSGVPVVPGTEN 185

Query: 114 NRFTMDSQHLI----SPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSWNHGDQ 165
              T +           P + K   GG   G+ VI K + +     L   ++ +      
Sbjct: 186 PIRTAEEAKQFCEEHGLPVITKAAYGGGGRGMRVIWKMEDLEEFFNLASNEAYAAFGDGS 245

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           + IE++++    +   VMGD   DV              ++        + PA  +   I
Sbjct: 246 MFIEKFIEKPRHIEVQVMGDNYGDVV-----HLFERDCSVQRRHQKVIEIAPAPHLDDAI 300

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            + +   A    +A+G       +FL D      +++E+N
Sbjct: 301 RQTLTEDAVRLCKAVGYSNAGTVEFLLDQEGNH-YFIEVN 339


>gi|67526095|ref|XP_661109.1| hypothetical protein AN3505.2 [Aspergillus nidulans FGSC A4]
 gi|40739876|gb|EAA59066.1| hypothetical protein AN3505.2 [Aspergillus nidulans FGSC A4]
 gi|259481983|tpe|CBF76018.1| TPA: conserved hypothetical protein [Aspergillus nidulans FGSC A4]
          Length = 380

 Score = 83.2 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 61/324 (18%), Positives = 106/324 (32%), Gaps = 56/324 (17%)

Query: 18  SGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDL---AFNVLHGNFGEDGLVQAILEL 74
           SG      L+  G +V + D    V        PD     ++ +H         Q    L
Sbjct: 55  SGADIVYTLQQKGIQVIKADPSAPVSSNEGWTFPDTEEGIYSAVH---------QGATHL 105

Query: 75  LE--IPYTHSGILASAL--------------------SMDKMRSK-QVVSSCGVPVCPSI 111
               I ++   +  SA                       DK     ++    G  +  S 
Sbjct: 106 WANTILFSSHPLQTSARLTPLADKIYVVGQPPGLVENFDDKAYLNGKLAQIGGFTLPKSW 165

Query: 112 LVNRFTMDS--QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
           L     +    Q +   P V KP++G  S G+ V +  Q +        +      +++E
Sbjct: 166 LATSENIQQLVQQVDRYPIVGKPVRGRGSHGVKVCRDKQQLLQHTKTLLA--ESPLVMLE 223

Query: 170 QYVDGIELTCGVMGDASLDV---TEIAVPKSDFYSYELKYS-----SLNSTHVLPAKIPL 221
           +++ G E T  VM     D    + + V + +       Y+     + NS  V   ++  
Sbjct: 224 EFLAGEEATITVMPPTPSDPHHWSTVPVNRFNHDDGIAPYNGVVAVTANSRVVTEEELKD 283

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT---------PVS 272
             Y ++ R      Q IG     R D             +IN++P MT           S
Sbjct: 284 PAYGKIMRQCEKVAQLIGATAPIRVDVRRFSPGSDFALFDINMKPNMTGPGRPGREDQAS 343

Query: 273 IFPEMAAYAGYSFRELLLWMVEDA 296
           +    A+  G+ +  LL  ++E A
Sbjct: 344 LTAIAASAMGWDYGTLLENILEGA 367


>gi|191638448|ref|YP_001987614.1| Carbamoyl-phosphate synthase large chain (Carbamoyl-phosphate
           synthetase ammonia chain) [Lactobacillus casei BL23]
 gi|239631462|ref|ZP_04674493.1| carbamoyl-phosphate synthase pyrimidine-specific [Lactobacillus
           paracasei subsp. paracasei 8700:2]
 gi|226700930|sp|B3WEF5|CARB_LACCB RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|190712750|emb|CAQ66756.1| Carbamoyl-phosphate synthase large chain (Carbamoyl-phosphate
           synthetase ammonia chain) [Lactobacillus casei BL23]
 gi|239525927|gb|EEQ64928.1| carbamoyl-phosphate synthase pyrimidine-specific [Lactobacillus
           paracasei subsp. paracasei 8700:2]
 gi|327382480|gb|AEA53956.1| Carbamoyl-phosphate synthase large chain [Lactobacillus casei LC2W]
 gi|327385678|gb|AEA57152.1| Carbamoyl-phosphate synthase large chain [Lactobacillus casei
           BD-II]
          Length = 1060

 Score = 83.2 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 52/286 (18%), Positives = 101/286 (35%), Gaps = 33/286 (11%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI---------DVD------------RSVGLV 45
           G ++E + S   G     AL + G++V  +         D +              V  +
Sbjct: 21  GQAAEFDYS---GTQACLALREEGYEVVLVNSNPATIMTDTEIADRVYIEPLTVEFVSQI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           L    PD     + G  G +  ++     IL+ L I    + + A   + D+   K ++ 
Sbjct: 78  LRKELPDAILPTIGGQIGLNLAMKLSNTGILDELGIELLGTKLTAIDQAEDRELFKNLMQ 137

Query: 102 SCGVPVCPSILVNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
               PV  S + N      Q    I  P +I+P       G  +   ++ +        +
Sbjct: 138 KLHEPVPESAIANNIEEAQQFADKIGFPVIIRPAFTMGGTGGGIANNEKELAEIAENGLN 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   Q+L+E+ + G  E+   VM DA+     I V   + +     ++  +        
Sbjct: 198 LSPVTQVLVERSIAGYKEVEFEVMRDAADSA--IVVCNMENFDPVGVHTGDSMVFAPTQT 255

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +     + ++  A    +A+   G     F  D  S K + +E+N 
Sbjct: 256 LTDKEVQMLRDAALKIIRALKIEGGCNVQFALDRNSFKYYVIEVNP 301



 Score = 77.5 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 44/266 (16%), Positives = 90/266 (33%), Gaps = 34/266 (12%)

Query: 24  SALEDAGFKVSQ-------IDVDRSVGLVLAHLKPDL--AFNVLHGNFGEDGLVQ----- 69
            A++ AG++          +  D S+   L      L    NV+     E  +VQ     
Sbjct: 579 KAIQKAGYEAIIMNSNPETVSTDFSIADKLYFEPLTLEDVLNVIDLEQPEGVIVQFGGQT 638

Query: 70  --AILELL---EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--FTMDSQH 122
              + E L    I    + +     + D+    QV+ S  +P             +    
Sbjct: 639 AINLAEPLANRGIKILGTSVEDLNRAEDRDLFDQVIKSLKLPQPEGGTATDKAGALAVAD 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + ++     +   + ++ S +H   +LI+ Y+ G E     +
Sbjct: 699 KIGYPVLVRPSYVLGGRAMEIVHDATELDNYIDRAVSVSHDHPVLIDHYLVGKECEVDCI 758

Query: 183 GDA---SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAI 238
            D     L      + ++  +S        +S  V P +    DI  ++        + +
Sbjct: 759 SDGDTVVLPGIMEHIERAGIHS-------GDSMAVYPPQTFSQDIIDQITDATIKLSRTL 811

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINV 264
            C G+    F+      K + +E+N 
Sbjct: 812 NCIGLMNVQFIIH--DGKAYVIEVNP 835


>gi|42519201|ref|NP_965131.1| carbamoyl phosphate synthase large subunit [Lactobacillus johnsonii
           NCC 533]
 gi|81667751|sp|Q74J34|CARB_LACJO RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|41583488|gb|AAS09097.1| carbamoylphosphate synthase large subunit [Lactobacillus johnsonii
           NCC 533]
          Length = 1062

 Score = 83.2 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 43/297 (14%), Positives = 95/297 (31%), Gaps = 38/297 (12%)

Query: 22  CASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ--- 69
           C  AL+  G++   I         D   S  L    L  +   NV      E  +VQ   
Sbjct: 577 CVKALQKMGYEAIVINSNPETVSTDFSISDKLYFEPLTLEDVLNVCDLEKPEGVIVQFGG 636

Query: 70  -------AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDS 120
                  A L+   I    + +     + D+    Q++    +     +        + +
Sbjct: 637 QTSINLAAGLKDHGIKILGTSVKDLNRAEDRELFDQIIKKLKLNQPKGLTATTHEGVIKA 696

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P +++P        + ++     +   L           +L++ Y+DG E    
Sbjct: 697 AEELGYPVLVRPSYVLGGKAMEIVYNKSELEEYLHDHVDIAADHPILVDDYLDGRECDVD 756

Query: 181 VMGDAS---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQ 236
            + D     L      +  +  +S        +S  V P      ++  ++  +      
Sbjct: 757 AICDGQDVLLPGIMEHIEHAGVHS-------GDSMAVYPPQNFTDEVKDKIMDVTRKLAL 809

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            + C GI    F+    + +V+ +E+N +   T     P ++   G    ++   ++
Sbjct: 810 TLNCVGIMNIQFIVR--NGEVYVIEVNPRASRT----VPFLSKITGIEMAQVATRVI 860



 Score = 77.5 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 49/289 (16%), Positives = 98/289 (33%), Gaps = 39/289 (13%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI---------DVD------------RSVGLV 45
           G ++E + S   G     AL + G++V  +         D               S+  +
Sbjct: 21  GQAAEFDYS---GTQACLALREEGYEVVLVNSNPATIMTDTTIADKVYIEPLTVESISRI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +    PD     L G  G +  +      IL+ L I    + + +   + D+ + K++  
Sbjct: 78  IRQEYPDAILPTLGGQVGLNMALSLAKTGILDELNIELLGTRLSSIEQAEDREKFKELCK 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G PV PS  VN     ++    I  P +++P       G  +    + +         
Sbjct: 138 ELGEPVPPSTTVNTVEEALEFGDRIGYPIIVRPAFTMGGTGGGICNNHEELAKIAKNGLE 197

Query: 160 WNHGDQLLIEQYVDG---IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216
            +   + LIE+ + G   IE       D +  +            +     + +S    P
Sbjct: 198 LSPVTECLIEKSIAGYKEIEFEVMRDHDDNAMIVCCMENFDPVGIH-----TGDSIVFSP 252

Query: 217 AK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           ++ +    Y+ ++  +    +A+   G        DP S     +E+N 
Sbjct: 253 SQTLSDKEYQMLRDCSLRLIRALKIEGGCNVQLALDPNSFDYDVIEVNP 301


>gi|330466670|ref|YP_004404413.1| carbamoyl-phosphate synthase subunit L [Verrucosispora maris
           AB-18-032]
 gi|328809641|gb|AEB43813.1| carbamoyl-phosphate synthase subunit L [Verrucosispora maris
           AB-18-032]
          Length = 1820

 Score = 83.2 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 43/214 (20%), Positives = 78/214 (36%), Gaps = 13/214 (6%)

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVNR 115
           G   ED     + E + + +      A     DK+ +K +    GVPV P     +    
Sbjct: 88  GFVAEDPAFAELCEKIGVTFIGPSPEAMRQLGDKIGAKLLAEQVGVPVAPWSRGAVENLN 147

Query: 116 FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQLLIEQY 171
               +   I  P ++K   GG   GI VI  +  +         +++       + +E+ 
Sbjct: 148 AARAAAAEIGYPLMLKATAGGGGRGIRVITSEAELADAYERTSQEAARAFGSGVVFLERL 207

Query: 172 VDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
           V G   +   V+ D       + V          K    +++ V    +  +   E++  
Sbjct: 208 VTGARHVEVQVIADGQGTAWALGVRDCSVQRRNQKIIEESASPV----LSAEQAAELKAS 263

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           A     A+G RG +  +FL+ P  R   +LE+N 
Sbjct: 264 AERLALAVGYRGAATVEFLYHPGDRLFAFLEVNT 297


>gi|237708300|ref|ZP_04538781.1| pyruvate carboxylase subunit A [Bacteroides sp. 9_1_42FAA]
 gi|265757066|ref|ZP_06090928.1| pyruvate carboxylase subunit A [Bacteroides sp. 3_1_33FAA]
 gi|229457521|gb|EEO63242.1| pyruvate carboxylase subunit A [Bacteroides sp. 9_1_42FAA]
 gi|263233565|gb|EEZ19194.1| pyruvate carboxylase subunit A [Bacteroides sp. 3_1_33FAA]
          Length = 419

 Score = 83.2 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 37/201 (18%), Positives = 79/201 (39%), Gaps = 20/201 (9%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ----HLISPPYVIK 131
            I +            DK+ +++ + + GVPV P       + +      + I  P ++K
Sbjct: 15  GIIFIGPSAETMEAMGDKIAARKRMIAAGVPVVPGTEQPLQSAEEAVRICNAIGYPVMLK 74

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQLLIEQYVDG-IELTCGVMGDAS 186
              GG   G+ +I  +  +      + S +      D + +E++V+    +   ++GD  
Sbjct: 75  ASMGGGGKGMRLIHSEDEVVEAYNTARSESMSSFGDDTVYLEKFVEEPHHIEFQILGDNH 134

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK---IPLDIYKEVQRLAFLAHQAIGCRGI 243
            +V  +       +  E      N   V  +    +  ++ +E+   A  A +A+   G 
Sbjct: 135 GNVIHL-------FDRECSVQRRNQKIVEESPSPFLTPELRQEMGEKAVAAARAVNYSGA 187

Query: 244 SRSDFLFDPLSRKVFWLEINV 264
              +FL D  +R  ++LE+N 
Sbjct: 188 GTIEFLVDK-NRDFYFLEMNT 207


>gi|262202447|ref|YP_003273655.1| carbamoyl-phosphate synthase L chain ATP--binding protein [Gordonia
           bronchialis DSM 43247]
 gi|262085794|gb|ACY21762.1| Carbamoyl-phosphate synthase L chain ATP- binding protein [Gordonia
           bronchialis DSM 43247]
          Length = 1832

 Score = 83.2 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 48/234 (20%), Positives = 86/234 (36%), Gaps = 14/234 (5%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
           + +   L     D A+ V  G   ED L   + E + I +      A     DK+ +K +
Sbjct: 69  KVLERALLETGADAAW-VGWGFVAEDPLFAELCERIGITFVGPSPEAMRKLGDKIGAKLI 127

Query: 100 VSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
               GVPV P     +        +   I  P ++K   GG   GI V+  D  +     
Sbjct: 128 AEEVGVPVAPWSRGAVDTVDEAKAAAAEIGYPLMLKATAGGGGRGIRVVTNDADLVDAYE 187

Query: 156 ----QSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLN 210
               +++       + +E+ V G   +   V+ D       + V          K    +
Sbjct: 188 RTRDEAARAFGSGIVFLERLVTGARHVEVQVIADGQGTAWALGVRDCSVQRRNQKIIEES 247

Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           ++ V    +  +   E++  A     A+G RG +  +FL+ P  +   +LE+N 
Sbjct: 248 ASPV----LAPEQVAELKGSAERLAVAVGYRGAATVEFLYHPGEKLFAFLEVNT 297


>gi|126642056|ref|YP_001085040.1| biotin carboxylase (A subunit of acetyl-CoA carboxylase)
           [Acinetobacter baumannii ATCC 17978]
          Length = 417

 Score = 83.2 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 79/220 (35%), Gaps = 19/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     I+E     +         L  +K+ +   +   GVP  P    
Sbjct: 38  AIHPGYGFLSENAEFAEIVESSGFTFIGPRPEHIRLMGNKVSAIVAMKKAGVPTVPGCDH 97

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD----QSIPLDLLQSSSWNHGDQL 166
            +     +     I  P ++K   GG   G+ ++++     +S+      +  W   D +
Sbjct: 98  AVTIHNALAEAKEIGFPLIVKAAAGGGGRGMRIVERVDTLLESVQAAQRDAEMWFGDDTV 157

Query: 167 LIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIY 224
            +E+++     +   V+GD +     +           L+          PA  +P    
Sbjct: 158 YMERFLQKPRHVEVQVLGDGNGHAIHLY-----DRDCSLQRRHQKVLEEAPAPNLPEQAR 212

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            ++ +    A Q +  RG    +FLF     + F++E+N 
Sbjct: 213 ADILQACVHACQLMQYRGAGTFEFLF--EDGEFFFIEMNT 250


>gi|319646136|ref|ZP_08000366.1| PycA protein [Bacillus sp. BT1B_CT2]
 gi|317391886|gb|EFV72683.1| PycA protein [Bacillus sp. BT1B_CT2]
          Length = 1147

 Score = 83.2 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 31/221 (14%), Positives = 79/221 (35%), Gaps = 20/221 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+       E   I +         +  DK+++++     G+PV P    
Sbjct: 82  AIHPGYGFLSENIQFAKRCEEEGIIFIGPTSEHLDMFGDKVKAREQAEKAGIPVIPGSDG 141

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL----DLLQSSSWNHGDQ 165
            +               P++IK   GG   G+ +++ +  +         ++ +    D+
Sbjct: 142 PVADIAEVKQFAEKFGYPFIIKASLGGGGRGMRIVRDESELEESYNRAKSEAKAAFGNDE 201

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDI 223
           + +E+ ++    +   V+GD   +V  +           ++        V P   +   +
Sbjct: 202 VYVEKLIEKPKHIEVQVIGDKEGNVVHLY-----DRDCSVQRRHQKVIEVAPSVSLSESL 256

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +++   A    + +        +FL    + + F++E+N 
Sbjct: 257 REKICDAAVKLAKNVEYVNAGTVEFLV--ANDEFFFIEVNP 295


>gi|317051752|ref|YP_004112868.1| acetyl-CoA carboxylase, biotin carboxylase [Desulfurispirillum
           indicum S5]
 gi|316946836|gb|ADU66312.1| acetyl-CoA carboxylase, biotin carboxylase [Desulfurispirillum
           indicum S5]
          Length = 447

 Score = 83.2 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 44/220 (20%), Positives = 81/220 (36%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     I     I +         L  DK R++Q +   GVPV      
Sbjct: 77  AIHPGYGFLAENANFANICNDCTIKFIGPTANHITLMGDKARARQTMMEAGVPVIQGSYG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSWNHGDQ 165
            I   R  +++   I  P +IK   GG   G+ + + D S+     +   ++ +  +   
Sbjct: 137 TITDERDALETAREIGYPVIIKASAGGGGKGMRIARNDASLQSSFNMAQNEARNAFNDAS 196

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+Y++    +   V GD+  +   +            K             +  D+ 
Sbjct: 197 VYIEKYIEEPKHIEFQVFGDSQGNAVHLGERDCSIQRRHQKLL----EEAPSPFLTPDLR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K +   A  A + IG       +FL D    + F++E+N 
Sbjct: 253 KRMGEAAVKALKHIGYENAGTVEFLVDKH-GEFFFIEMNT 291


>gi|271498632|ref|YP_003331657.1| urea carboxylase [Dickeya dadantii Ech586]
 gi|270342187|gb|ACZ74952.1| urea carboxylase [Dickeya dadantii Ech586]
          Length = 1197

 Score = 83.2 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 33/220 (15%), Positives = 75/220 (34%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+       E   + +    +        K +++ +     VP+ P    
Sbjct: 77  AIHPGYGFLSENAGFVTRCEQAGLVFLGPTVAQMTAFGLKHQARALAQQNDVPLLPGSGL 136

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN----HGDQL 166
           +       +    I  P ++K   GG  +G+        +     +           D +
Sbjct: 137 LTSLDSACEQAQRIGYPVMLKSTAGGGGIGMQRCNDHDQLVDAFTRVKRLAGNNFADDGV 196

Query: 167 LIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIY 224
            +E+++     +   V GD   +V  +            +  +       PA  +   + 
Sbjct: 197 FLEKFIAQARHIEVQVFGDGQGNVIALGE-----RDCSAQRRNQKVIEETPAPHLSDSVR 251

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            E+Q  A    QA+  R     ++++D  S++ ++LE+N 
Sbjct: 252 AELQATAIRLCQAVNYRSAGTVEYVYDESSKQFWFLEVNT 291


>gi|227890076|ref|ZP_04007881.1| carbamoyl phosphate synthase large subunit [Lactobacillus johnsonii
           ATCC 33200]
 gi|227849520|gb|EEJ59606.1| carbamoyl phosphate synthase large subunit [Lactobacillus johnsonii
           ATCC 33200]
          Length = 1062

 Score = 83.2 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 43/297 (14%), Positives = 95/297 (31%), Gaps = 38/297 (12%)

Query: 22  CASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ--- 69
           C  AL+  G++   I         D   S  L    L  +   NV      E  +VQ   
Sbjct: 577 CVKALQKMGYEAIVINSNPETVSTDFSISDKLYFEPLTLEDVLNVCDLEKPEGVIVQFGG 636

Query: 70  -------AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDS 120
                  A L+   I    + +     + D+    Q++    +     +        + +
Sbjct: 637 QTSINLAAGLKDHGIKILGTSVKDLNRAEDRELFDQIIKKLKLNQPKGLTATTHEGVIKA 696

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P +++P        + ++     +   L           +L++ Y+DG E    
Sbjct: 697 AEELGYPVLVRPSYVLGGKAMEIVYNKSELEEYLHDHVDIAADHPILVDDYLDGRECDVD 756

Query: 181 VMGDAS---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQ 236
            + D     L      +  +  +S        +S  V P      ++  ++  +      
Sbjct: 757 AICDGQDVLLPGIMEHIEHAGVHS-------GDSMAVYPPQNFTDEVKDKIMDVTRKLAL 809

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            + C GI    F+    + +V+ +E+N +   T     P ++   G    ++   ++
Sbjct: 810 TLNCVGIMNIQFIVR--NGEVYVIEVNPRASRT----VPFLSKITGIEMAQVATRVI 860



 Score = 76.7 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 48/289 (16%), Positives = 98/289 (33%), Gaps = 39/289 (13%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI---------DVD------------RSVGLV 45
           G ++E + S   G     AL + G++V  +         D               S+  +
Sbjct: 21  GQAAEFDYS---GTQACLALREEGYEVVLVNSNPATIMTDTTIADKVYIEPLTVESISRI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +    PD     L G  G +  +      IL+ L I    + + +   + D+ + K++  
Sbjct: 78  IRQEYPDAILPTLGGQVGLNMALSLAKTGILDELNIELLGTRLSSIEQAEDREKFKELCK 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G PV PS  VN     ++    I  P +++P       G  +    + +         
Sbjct: 138 ELGEPVPPSTTVNTVEEALEFGDRIGYPIIVRPAFTMGGTGGGICNNHEELAKIAKNGLE 197

Query: 160 WNHGDQLLIEQYVDG---IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216
            +   + LIE+ + G   +E       D +  +            +     + +S    P
Sbjct: 198 LSPVTECLIEKSIAGYKEVEFEVMRDHDDNAMIVCCMENFDPVGIH-----TGDSIVFSP 252

Query: 217 AK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           ++ +    Y+ ++  +    +A+   G        DP S     +E+N 
Sbjct: 253 SQTLSDKEYQMLRDCSLRLIRALKIEGGCNVQLALDPNSFDYDVIEVNP 301


>gi|83313341|ref|YP_423605.1| Acetyl/propionyl-CoA carboxylase, alpha subunit [Magnetospirillum
           magneticum AMB-1]
 gi|82948182|dbj|BAE53046.1| Acetyl/propionyl-CoA carboxylase, alpha subunit [Magnetospirillum
           magneticum AMB-1]
          Length = 663

 Score = 83.2 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 74/220 (33%), Gaps = 16/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H  +G   E    Q  L    I +      A     DK+ SK++    GV   P  L 
Sbjct: 77  AVHPGYGFLSEKREFQEALGKAGIAFIGPDAHAIFAMGDKIESKKLAREAGVNTVPGYLG 136

Query: 113 VNRFTMDS---QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL----DLLQSSSWNHGDQ 165
           V +   ++      I  P ++K   GG   G+ +   D            ++ +    D+
Sbjct: 137 VIKDADEAVKIAREIGYPVMLKASAGGGGKGMRLAWNDAEAHEGFTSATNEAKTSFGDDR 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E++++    +   V+ D       +   +        K             +  +  
Sbjct: 197 VFVEKFIEQPRHIEIQVLADGQGTTLYLGERECSIQRRHQK----VIEEAPSPFLTPETR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K +   A    + +  +     +F+    + + ++LE+N 
Sbjct: 253 KAMGEQACALARIVNYKSAGTVEFIVGGATGEFYFLEMNT 292


>gi|70998028|ref|XP_753746.1| 3-methylcrotonyl-CoA carboxylase subunit alpha (MccA) [Aspergillus
           fumigatus Af293]
 gi|66851382|gb|EAL91708.1| 3-methylcrotonyl-CoA carboxylase subunit alpha (MccA), putative
           [Aspergillus fumigatus Af293]
 gi|159126517|gb|EDP51633.1| 3-methylcrotonyl-CoA carboxylase subunit alpha (MccA), putative
           [Aspergillus fumigatus A1163]
          Length = 756

 Score = 83.2 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 53/287 (18%), Positives = 98/287 (34%), Gaps = 44/287 (15%)

Query: 13  EVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFN---------------- 56
           E++L  G+  +      G KV+ +  D       A   P  AFN                
Sbjct: 48  EIALRVGRTASQH----GIKVTTLYTDPDRYAQHALSSP-FAFNLGSVSAYLDGDRIIEI 102

Query: 57  -------VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP 106
                   +H  +G   E+           + +      A     DK +SK+++++ GVP
Sbjct: 103 AKREGCQAIHPGYGFLSENSEFARKCTEAGLVFIGPPWKAIEDMGDKSQSKKIMTAAGVP 162

Query: 107 VCPSILVNRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
             P    +   ++        I  P +IK +KGG   G+ + +        L  + S   
Sbjct: 163 CVPGYHGSNQDVNFLEAEADKIKYPVLIKAVKGGGGKGMRIARSKAEFQAQLQSAKSEAM 222

Query: 163 ----GDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
                D +L+E+Y+     +   +  D   +   +            K            
Sbjct: 223 NSFGDDHVLVEKYITTPRHIEVQIFADKYGNCVALGERDCSIQRRHQKIL----EESPAP 278

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +P    K++   A  A  A+G  G    +F+FD  + + F++E+N 
Sbjct: 279 HLPDATRKDIWAKARAAALAVGYEGAGTVEFIFDNDTGEFFFMEMNT 325


>gi|300786637|ref|YP_003766928.1| argininosuccinate lyase [Amycolatopsis mediterranei U32]
 gi|299796151|gb|ADJ46526.1| argininosuccinate lyase [Amycolatopsis mediterranei U32]
          Length = 423

 Score = 83.2 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 88/223 (39%), Gaps = 20/223 (8%)

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLG 140
              A     DK   +  + + GVPV   +  +       + H +  P V+KP+ G  S G
Sbjct: 114 DPAAIERCRDKAAQRWCLRAAGVPVPDFVACDTAAAAERAAHRLGGPVVVKPVSGSGSAG 173

Query: 141 IIVIKKDQSIP--LDLLQSSSWNHGD-QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKS 197
           +       +     D L +        ++L+E+ V G E +  ++      VT   V ++
Sbjct: 174 VRRCANPGAARWWADRLLTDGRRFPVARVLVEREVAGPEFSVEILDGKPAGVTRKHVGQA 233

Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR-GISRSDFLFDPLSRK 256
            ++        + + H  PA +P      +  +A  A QA+G   G +  +    P   +
Sbjct: 234 PYF--------VETGHDHPAPLPAGEAVALHEVAVRAVQAVGHSVGPAHVELRV-PPGGE 284

Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
              +EIN +       + P +  +A  + R+L+  +V  A+ L
Sbjct: 285 PTVIEINPR---LAGGLIPRLVRHA--TGRDLVDEVVAGAAAL 322


>gi|298244252|ref|ZP_06968058.1| Carbamoyl-phosphate synthase L chain ATP-binding [Ktedonobacter
           racemifer DSM 44963]
 gi|297551733|gb|EFH85598.1| Carbamoyl-phosphate synthase L chain ATP-binding [Ktedonobacter
           racemifer DSM 44963]
          Length = 674

 Score = 83.2 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 73/220 (33%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       E   I +      A  L   K+ +KQ+    G P+ P    
Sbjct: 77  AIHPGYGFLSENADFAEACEQAGIVFIGPPASAMRLMGSKIAAKQIAERVGAPIVPGYNG 136

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
            R   D        I  P +IK   GG   G+ V+   Q +P  L     ++ +    D 
Sbjct: 137 ERQDADTLLAEAEHIGFPLLIKASAGGGGKGMRVVNSLQELPEQLAGAQREAGAAFGDDT 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+ +     +   VMGD    +  +   +        K             +   + 
Sbjct: 197 VFLERLILRPRHVEIQVMGDKYGTLVYLGERECSIQRRHQKI----VEESPSVALTPRLR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            E+   A     A G       +F+ D      ++LE+N 
Sbjct: 253 AEMGEAAVRIASAAGYVNAGTLEFMLD-DDGNFYFLEMNT 291


>gi|237723437|ref|ZP_04553918.1| pyruvate carboxylase subunit A [Bacteroides sp. D4]
 gi|229438193|gb|EEO48270.1| pyruvate carboxylase subunit A [Bacteroides dorei 5_1_36/D4]
          Length = 419

 Score = 83.2 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 37/201 (18%), Positives = 79/201 (39%), Gaps = 20/201 (9%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ----HLISPPYVIK 131
            I +            DK+ +++ + + GVPV P       + +      + I  P ++K
Sbjct: 15  GIIFIGPSAETMEAMGDKIAARKRMIAAGVPVVPGTEQPLQSAEEAVRICNEIGYPVMLK 74

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQLLIEQYVDG-IELTCGVMGDAS 186
              GG   G+ +I  +  +      + S +      D + +E++V+    +   ++GD  
Sbjct: 75  ASMGGGGKGMRLIHSEDEVVEAYNTARSESMSSFGDDTVYLEKFVEEPHHIEFQILGDNH 134

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK---IPLDIYKEVQRLAFLAHQAIGCRGI 243
            +V  +       +  E      N   V  +    +  ++ +E+   A  A +A+   G 
Sbjct: 135 GNVIHL-------FDRECSVQRRNQKIVEESPSPFLTPELRQEMGEKAVAAARAVNYSGA 187

Query: 244 SRSDFLFDPLSRKVFWLEINV 264
              +FL D  +R  ++LE+N 
Sbjct: 188 GTIEFLVDK-NRDFYFLEMNT 207


>gi|108758762|ref|YP_633734.1| acetyl-CoA carboxylase biotin carboxylase subunit [Myxococcus
           xanthus DK 1622]
 gi|108462642|gb|ABF87827.1| acetyl-CoA carboxylase, biotin carboxylase [Myxococcus xanthus DK
           1622]
          Length = 450

 Score = 83.2 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 35/219 (15%), Positives = 79/219 (36%), Gaps = 14/219 (6%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+G          + +      A A   DK +++++VS+ GVPV P    
Sbjct: 77  AIHPGYGFLSENGEFAQACADAGLIFVGPPPEAMARMKDKSQARKLVSAAGVPVVPGSEG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-----SSSWNHGD 164
            +      +     I  P ++K   GG  +G+ V +    +     Q      +++    
Sbjct: 137 VVPDVASALAEAERIGYPVLVKAASGGGGIGMAVARNAAEMEKVYRQCTDRAKAAFGKEG 196

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             +   +     +   ++GD    +      +        K      + +       ++ 
Sbjct: 197 VYVERYFPAPRHIEVQILGDQHGHLIHCLERECSIQRRHQKVVEEAPSVLFADGRNPELA 256

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
           +++   A  A +A G       +FL+     +V+++E+N
Sbjct: 257 QKLFTAAVAAAKAFGYANAGTVEFLY--SDGEVYFIEMN 293


>gi|23098946|ref|NP_692412.1| carbamoyl phosphate synthase large subunit [Oceanobacillus
           iheyensis HTE831]
 gi|22777174|dbj|BAC13447.1| carbamoyl-phosphate synthase (glutamine-hydrolyzing) large subunit
           [Oceanobacillus iheyensis HTE831]
          Length = 1068

 Score = 83.2 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 34/224 (15%), Positives = 87/224 (38%), Gaps = 11/224 (4%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQHLISPPYV 129
           LE   +    +G+ A   + D+ + + ++    +       V R    +D+ + I  P +
Sbjct: 646 LERRGVRILGTGLDAIDRAEDRDKFEVLLDELDILRPKGKAVPRLDQAIDTANEIGYPVL 705

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           ++P        + ++  +Q +   L +SS  +    +LI++Y+ G+E+    + D    +
Sbjct: 706 VRPSYVIGGSRMEIVYNEQELENYLKKSSHIDSAHPILIDKYLTGMEVEVDAISDGETTI 765

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
               +   +       +S  +     P ++   + ++    A    +A+  +G+    F+
Sbjct: 766 IPGIMEHIERAGV---HSGDSMAVYPPQRLSTTVKEKCLDAAIKISKALQVKGLINIQFI 822

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
                  V+ LE+N +   T     P ++   G +   +    +
Sbjct: 823 IREED--VYVLEVNPRASRT----IPFLSKITGITMANIATRCI 860



 Score = 69.8 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 55/287 (19%), Positives = 108/287 (37%), Gaps = 35/287 (12%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQ-------IDVDRSVGL--------------V 45
           G ++E + S   G     AL++ G+ V         I  D +V                +
Sbjct: 21  GQAAEFDYS---GTQACHALKEEGYTVILANSNPATIMTDHTVADKVYMEPLTEEFLTKI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +    PD     L G  G +  ++     ILE  ++    S   +   + D+   +++++
Sbjct: 78  IRKENPDAILPTLGGQTGLNLAMELFHKGILEDHQVQLLGSAPASIEKAEDRELFRKLMN 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G PV  S +V+      D  H I  P +++P       G  +   ++ +        S
Sbjct: 138 ELGEPVPESAIVHTVEEAFDFAHTIGFPLIVRPAYTLGGTGGGMCYNEEDLKEITKNGLS 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +  +Q LIE+ + G  E+   VM D +     I V   +     +   + +S  V P++
Sbjct: 198 LSPVNQCLIERNIAGFKEIEYEVMRDKNDQA--IVVCNMENID-PVGIHTGDSIVVAPSQ 254

Query: 219 -IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +    Y  ++  +    +A+   G        DP S + + +E+N 
Sbjct: 255 TLSDREYHLLRNASLRIIRALEIEGGCNVQLALDPNSFQYYIIEVNP 301


>gi|326390047|ref|ZP_08211609.1| carbamoyl-phosphate synthase, large subunit [Thermoanaerobacter
           ethanolicus JW 200]
 gi|325993912|gb|EGD52342.1| carbamoyl-phosphate synthase, large subunit [Thermoanaerobacter
           ethanolicus JW 200]
          Length = 1072

 Score = 83.2 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 57/291 (19%), Positives = 107/291 (36%), Gaps = 43/291 (14%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI---------DVD------------RSVGLV 45
           G ++E + S   G     +L++ G +V  +         D D              V  +
Sbjct: 21  GQAAEFDYS---GTQACKSLKEEGVQVVLVNNNPATIMTDTDIADIVYIENPTVSVVEKI 77

Query: 46  LAHLKPDLAFNVLHGNFG--------EDGLVQAILELLEIPYTHSGILASALSMDKMRSK 97
           +A  KPD     L G  G        EDG    IL+   +    +   +   + D+   K
Sbjct: 78  IAKEKPDGILATLGGQTGLNLAVKLKEDG----ILDKYNVKLLGTSFESIKTAEDRELFK 133

Query: 98  QVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
           + +   G PV  SI V      +        P +I+P       G  +   D+ +   + 
Sbjct: 134 RKMQEIGEPVAESITVTNVEDALKFAKNYGYPLIIRPAYTLGGTGGGIAHNDEELISIVD 193

Query: 156 QSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHV 214
                +   ++L+E+ + G  E+   VM DA+ +   I     + +     ++  +S  V
Sbjct: 194 LGLKKSMVGEVLVEKSLYGWKEIEFEVMRDAADNCITIC--SMENFDPVGVHT-GDSIVV 250

Query: 215 LPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            P + +    Y+ ++  +    +A+   G     F  DP S K + +E+N 
Sbjct: 251 APVQTLSDYEYQMLRSASIKIIKALKIEGGCNIQFALDPQSHKYYVIEVNP 301



 Score = 74.4 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 31/216 (14%), Positives = 74/216 (34%), Gaps = 13/216 (6%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--SILVNRFTMDSQHLISPPYVIKPL 133
            +    +   +  +S D+ +  +++    +        L      D    +  P +++P 
Sbjct: 650 GVKILGTSHESIDISEDREKFSKLLKELNINQPKGEYALTVGDAKDIALKLGFPLLVRPS 709

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
                  +  +   Q I   +  ++  + G  +LI++Y+DG E+    + D    +    
Sbjct: 710 YVIGGQSMEKVNTLQEIIDYVSNATQVSPGKPVLIDKYIDGREVEVDAVSDGECVLIPGI 769

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
           +   +           +S  + PA+ +       +        +A+  +G+    F    
Sbjct: 770 MEHIERAGVHS----GDSFSIYPARNLSEREINTIIEYTEKISKALNVKGLINIQFAVKE 825

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
               V+ LE+N +   T     P M+   G    +L
Sbjct: 826 --GTVYVLEVNPRASRT----VPIMSKATGIPMVKL 855


>gi|297180540|gb|ADI16752.1| biotin carboxylase [uncultured gamma proteobacterium HF0010_11B23]
          Length = 447

 Score = 83.2 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 38/216 (17%), Positives = 77/216 (35%), Gaps = 19/216 (8%)

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL----VNR 115
           G   E+       +     +         +  DK+++K+++ S GVP  P          
Sbjct: 85  GFLAENASFAEKCKESGFEFIGPDPKVINVMGDKIKAKELIESLGVPTVPGYTGQIQSQN 144

Query: 116 FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI-----PLDLLQSSSWNHGDQLLIEQ 170
              +    +  P ++K   GG   G+ V+     +             ++   D++ IE+
Sbjct: 145 QIENIVEEVGYPVIVKASSGGGGKGMRVVYDKSELWDSIIGAQNEAKLAFG-NDEVFIEK 203

Query: 171 YV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQ 228
           Y+     +   + GD    V  +    S   S + KY         PA  +  +   E+Q
Sbjct: 204 YLKKPRHIEIQIFGDGKGKVVHLY---SRDCSLQRKYQ--KIVEEAPAKNLNQEKLDEIQ 258

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +   A   +  +G    +FL+     + F++E+N 
Sbjct: 259 NICVKACSELNYKGAGTLEFLY--EDNEFFFIEMNT 292


>gi|281201784|gb|EFA75992.1| propionyl-CoA carboxylase [Polysphondylium pallidum PN500]
          Length = 692

 Score = 83.2 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 84/224 (37%), Gaps = 26/224 (11%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      LE + + +   G  A     DK+ SK++  + GV V P  + 
Sbjct: 110 AVHPGYGFLSENSHFVKELENIGVTFIGPGSYAMHALGDKIESKKIAKNAGVSVIPGFIG 169

Query: 114 NRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
              T++      + I  P ++K   GG   G+ +   D+ + +    S          D+
Sbjct: 170 EVDTLEEVIKTANSIGYPVMVKASAGGGGKGMRIAWNDKDVEIGFRLSKQEAKSSFGDDR 229

Query: 166 LLIEQYVD-GIELTCGVMGDAS----LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
           +LIE+Y+D G  +   V+ D          E ++ +          +           + 
Sbjct: 230 MLIEKYIDRGRHIEIQVLSDGETALYFPERECSIQRR---------NQKVIEEAPSPFLD 280

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
                 + R A    +A+G +     +FL D      ++LE+N 
Sbjct: 281 DATRTAMGRQAAALCKAVGYKSAGTVEFLVDSQKN-FYFLEMNT 323


>gi|314936697|ref|ZP_07844044.1| pyruvate carboxylase [Staphylococcus hominis subsp. hominis C80]
 gi|313655316|gb|EFS19061.1| pyruvate carboxylase [Staphylococcus hominis subsp. hominis C80]
          Length = 1149

 Score = 83.2 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 79/221 (35%), Gaps = 20/221 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+           I +    +    +  DK++++       +PV P    
Sbjct: 80  AIHPGYGFLSENEEFARRCNEEGITFIGPHLDHLDMFGDKVKARTTAIKANLPVIPGTDG 139

Query: 114 NRFTMDSQHLI----SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
                D+          P +IK   GG   G+ +++++  +     ++ S         +
Sbjct: 140 PIENFDAAKAFAKEAGFPLMIKATSGGGGKGMRIVREESELEDAFHRAKSEAQKSFGNSE 199

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDI 223
           + IE+Y+D    +   V+GD   D+  +           ++        V P   +P ++
Sbjct: 200 VYIERYIDNPKHIEVQVIGDEYGDIVHLYE-----RDCSVQRRHQKVVEVAPSVGLPDEL 254

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + + + A    + I        +FL      + F++E+N 
Sbjct: 255 RERICQSALQLMKNIKYVNAGTVEFLV--SGDEFFFIEVNP 293


>gi|254294262|ref|YP_003060285.1| acetyl-CoA carboxylase, biotin carboxylase [Hirschia baltica ATCC
           49814]
 gi|254042793|gb|ACT59588.1| acetyl-CoA carboxylase, biotin carboxylase [Hirschia baltica ATCC
           49814]
          Length = 448

 Score = 83.2 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 83/220 (37%), Gaps = 20/220 (9%)

Query: 58  LHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP----S 110
           +H  +G   E+     I+E  +I +         L  DK+ +K  +   GVP  P     
Sbjct: 79  IHPGYGFLSENAKFAEIVEAHDIAFIGPTAEHIRLMGDKIAAKDAMIRTGVPCVPGSDGG 138

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS-----SSWNHGDQ 165
           +            I  P +IK   GG   G+ V      +      +     +++   D 
Sbjct: 139 VADVAEAQKVAKQIGYPVIIKASAGGGGRGMKVALTPDELETAFRTARTESKAAFG-DDA 197

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+Y+     +   V+ D   +V  +        S + ++  +      PA +     
Sbjct: 198 VYIEKYLQKPRHIEIQVIADTHGNVVHLGERD---CSLQRRHQKVFEEAPSPA-LTESER 253

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            E+ +    + + +G RG+   +FL+   + + +++E+N 
Sbjct: 254 AEIGKRVCASIKKLGYRGVGTIEFLW--ENNEFYFIEMNT 291


>gi|218890910|ref|YP_002439776.1| geranyl-CoA carboxylase, alpha-subunit (biotin-containing)
           [Pseudomonas aeruginosa LESB58]
 gi|218771135|emb|CAW26900.1| geranyl-CoA carboxylase, alpha-subunit (biotin-containing)
           [Pseudomonas aeruginosa LESB58]
          Length = 661

 Score = 83.2 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 71/220 (32%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       E   I +      A  L   K  SK  + + GVP  P    
Sbjct: 79  AIHPGYGFLSENAEFARACEAAGIVFIGPDAEAIHLMGSKRLSKIAMLAAGVPCIPGYEG 138

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS-----SWNHGD 164
                         I  P +IK   GG   G+ ++++   +   L  +      ++   +
Sbjct: 139 AEQDDATLRREAERIGYPLMIKASAGGGGRGMRLVEEPDQLLDQLRTARSEALGAFGSAE 198

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
            +L +  +    +   V GD   ++  +            K             +  D+ 
Sbjct: 199 LILEKAVLRPRHVEIQVFGDRHGNLLYLGERDCSVQRRHQK----VIEEAPCPVLDADLR 254

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +   A  A  ++   G    +FL      + ++LE+N 
Sbjct: 255 RAMGEAAVKAAASVNYVGAGTVEFLL-GEDGRFYFLEMNT 293


>gi|85716145|ref|ZP_01047120.1| Propionyl-coenzyme A carboxylase alpha polypeptide [Nitrobacter sp.
           Nb-311A]
 gi|85696978|gb|EAQ34861.1| Propionyl-coenzyme A carboxylase alpha polypeptide [Nitrobacter sp.
           Nb-311A]
          Length = 671

 Score = 83.2 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 82/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG----EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            +H  +G     +G  +A+ +   + +      A A   DK+ SK+V +  GV   P  +
Sbjct: 77  AVHPGYGFLSEREGFPRALAD-AGVVFIGPNPNAIAAMGDKIESKKVAAEAGVSTVPGFI 135

Query: 113 ----VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK----DQSIPLDLLQSSSWNHGD 164
                ++   +    I  P +IK   GG   G+ V        +   L   ++ +    D
Sbjct: 136 GVIEDDKHATEIAEKIGYPVMIKASAGGGGKGMRVAHSSAGVVEGFNLAKAEAKASFGDD 195

Query: 165 QLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           ++ IE+++ D   +   V+GD    V  +   +        K          P+ +  +I
Sbjct: 196 RVFIEKFIVDPRHIEIQVLGDKHGAVIHLGERECSIQRRNQK-----IIEEAPSPLLDEI 250

Query: 224 YKE-VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +  +   A    +A+        +F      +  ++LE+N 
Sbjct: 251 TRRKMGEQAVALAKAVNYDSAGTVEF-VVGQDKSFYFLEMNT 291


>gi|148253925|ref|YP_001238510.1| acetyl-CoA carboxylase biotin carboxylase subunit [Bradyrhizobium
           sp. BTAi1]
 gi|146406098|gb|ABQ34604.1| acetyl CoA carboxylase, biotin carboxylase subunit [Bradyrhizobium
           sp. BTAi1]
          Length = 460

 Score = 83.2 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 43/234 (18%), Positives = 84/234 (35%), Gaps = 15/234 (6%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
            +V       K D      +G   E+      +    I +      A  L  DK+ ++QV
Sbjct: 65  EAVVNAAKSAKVDAVHPG-YGFLAENAEFAEAVTAAGIVFVGPSAEAIRLLGDKVMARQV 123

Query: 100 VSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI----P 151
            +  GVP  P     +      +   + I  P +IK   GG   GI ++   +      P
Sbjct: 124 AALAGVPTVPGSDGRVTDLDAAITIANSIGYPVMIKAAAGGGGRGIRIVGDAEEFARQFP 183

Query: 152 LDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLN 210
               ++++      L IE+ ++    +   ++GD   DV      +        K     
Sbjct: 184 QASSEAAAAFGDGGLYIEKVIERARHVEVQILGDGH-DVVHCYERECSLQRRRQK----V 238

Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
                   +P D+ + +   A    +A+G  G    ++L+D  +   +++E+N 
Sbjct: 239 WEEAPAVGLPDDVRQRLCASAVALGRAVGYSGAGTVEYLYDDATSAFYFIEVNT 292


>gi|262193582|ref|YP_003264791.1| acetyl-CoA carboxylase, biotin carboxylase [Haliangium ochraceum
           DSM 14365]
 gi|262076929|gb|ACY12898.1| acetyl-CoA carboxylase, biotin carboxylase [Haliangium ochraceum
           DSM 14365]
          Length = 444

 Score = 83.2 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 41/219 (18%), Positives = 83/219 (37%), Gaps = 16/219 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   ED     + E  +I +      +  L  DK+R+++ ++  GVPV P    
Sbjct: 77  AIHPGYGFLAEDPEFAEVCEKCDIQWIGPRPDSMRLMGDKIRAREAMAKAGVPVLPGSGA 136

Query: 114 NRFTMD---SQHLISPPYVIKPLKGGSSLGIIVIKKD----QSIPLDLLQSSSWNHGDQL 166
                +   +   I  P ++K   GG   G+ ++++         L   ++ +      +
Sbjct: 137 INTEAELHQAVEQIGFPLILKAAAGGGGRGMKIVREPGRLVADWSLARTEAQAAFGNPDM 196

Query: 167 LIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
             E+Y +    +   V+ D       +   +        K           A +  DI  
Sbjct: 197 YAERYCERPRHIEIQVVADHHGTAAHLGERECSVQRRHQK----VVEEAPAASLDSDIRD 252

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           ++   A  A +AIG R +   +FL D    + +++E+N 
Sbjct: 253 QMTDAALKAVRAIGYRNLGTLEFLLDE-DGQFYFMEMNT 290


>gi|226954124|ref|ZP_03824588.1| biotin carboxylase (A subunit of acetyl-CoA carboxylase)
           [Acinetobacter sp. ATCC 27244]
 gi|294650267|ref|ZP_06727635.1| acetyl-CoA carboxylase biotin carboxylase subunit [Acinetobacter
           haemolyticus ATCC 19194]
 gi|226835165|gb|EEH67548.1| biotin carboxylase (A subunit of acetyl-CoA carboxylase)
           [Acinetobacter sp. ATCC 27244]
 gi|292823797|gb|EFF82632.1| acetyl-CoA carboxylase biotin carboxylase subunit [Acinetobacter
           haemolyticus ATCC 19194]
          Length = 454

 Score = 83.2 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 78/220 (35%), Gaps = 19/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     I+E     +         L  +K+ +   +   GVP  P    
Sbjct: 77  AIHPGYGFLSENAEFAEIVENSGFIFIGPRPEHIRLMGNKVSAIIAMKKAGVPTVPGCDH 136

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD----QSIPLDLLQSSSWNHGDQL 166
            +     +     I  P ++K   GG   G+ ++++     +S+      +  W   D +
Sbjct: 137 AVTIHNALAEAKEIGFPLIVKAAAGGGGRGMRIVERVDTLLESVQAAQRDAEMWFGDDTV 196

Query: 167 LIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIY 224
            +E+++     +   V+GD +     +           L+          PA  +P    
Sbjct: 197 YMERFLQKPRHVEVQVLGDGNGHAIHLY-----DRDCSLQRRHQKVLEEAPAPNLPEQAR 251

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            ++      A + +  RG    +FLF     + F++E+N 
Sbjct: 252 ADILEACVNACKLMQYRGAGTFEFLF--EDGEFFFIEMNT 289


>gi|255655891|ref|ZP_05401300.1| biotin carboxylase (acetyl-CoA carboxylase subunit A) [Clostridium
           difficile QCD-23m63]
 gi|296450687|ref|ZP_06892440.1| acetyl-CoA carboxylase subunit A [Clostridium difficile NAP08]
 gi|296879196|ref|ZP_06903191.1| acetyl-CoA carboxylase subunit A [Clostridium difficile NAP07]
 gi|296260531|gb|EFH07373.1| acetyl-CoA carboxylase subunit A [Clostridium difficile NAP08]
 gi|296429739|gb|EFH15591.1| acetyl-CoA carboxylase subunit A [Clostridium difficile NAP07]
          Length = 453

 Score = 83.2 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 40/237 (16%), Positives = 91/237 (38%), Gaps = 21/237 (8%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRS 96
            ++  +   LK D     +H  FG   E+       E   I +         L  DK R+
Sbjct: 64  ENIIYLALKLKCD----AIHPGFGFLSENPEFAKQCEENNIIFIGPTREQMILMGDKSRA 119

Query: 97  KQVVSSCGVPVCP---SILVNRFT-MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI-- 150
           ++ +    +PV P   S+L  +   ++    I  P +IK   GG   G+ +++K++ +  
Sbjct: 120 RETMMELNIPVVPGSESVLKTKEEALEVAREIGYPVMIKASSGGGGKGMRIVRKEEELFS 179

Query: 151 --PLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYS 207
              +   ++ +      L +E++++    +   V GD   +   +            K  
Sbjct: 180 NFDMASSEALAAFSNSDLYMEKFIENPRHIEVQVFGDKHSNAIHLGDRDCSMQRRNQK-- 237

Query: 208 SLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
                  L   +  +  +++ ++A    + +G  G    +F+ D   +  +++E+N 
Sbjct: 238 --VIEESLSPYLSDEERQKLHKIAVDIVKGVGYIGAGTIEFIVDK-DKNFYFIEMNT 291


>gi|108759202|ref|YP_628365.1| acetyl-CoA carboxylase biotin carboxylase subunit [Myxococcus
           xanthus DK 1622]
 gi|108463082|gb|ABF88267.1| acetyl-CoA carboxylase, biotin carboxylase [Myxococcus xanthus DK
           1622]
          Length = 664

 Score = 83.2 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 83/220 (37%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+           + +      A  L  +K ++K  + + GVP  P    
Sbjct: 79  AIHPGYGFLSENADFARACRDAGLVFIGPEAEAITLMGNKRQAKLRMIAAGVPCIPGYEA 138

Query: 114 NRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS-----SWNHGD 164
           +    ++       I  P ++K   GG   G+ ++ +   +   L  +      ++  G+
Sbjct: 139 SDLDDEALAVEGERIGFPLMVKAAAGGGGRGMRLVHEASQLRAALRAARSEATNAFGSGE 198

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
            +L +  +D   +   V  D   +V  +        S + ++  +      PA +   + 
Sbjct: 199 LILEKAVIDARHVEVQVFADTHGNVVHLGERD---CSVQRRHQKIVEESPSPA-VSPALR 254

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +  +A  A +AIG RG    +FL  P     +++E+N 
Sbjct: 255 ARMGEVAVAAARAIGYRGAGTIEFLLAPS-GDFYFMEMNT 293


>gi|332187516|ref|ZP_08389253.1| acetyl-CoA carboxylase, biotin carboxylase [Sphingomonas sp. S17]
 gi|332012445|gb|EGI54513.1| acetyl-CoA carboxylase, biotin carboxylase [Sphingomonas sp. S17]
          Length = 450

 Score = 83.2 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 76/220 (34%), Gaps = 18/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     I+E   + +         +  DK+ +K+   + G+P+ P    
Sbjct: 79  AIHPGYGFLSENAKFAEIVEAHGLIFVGPKPEHIRIMGDKVEAKRTAGALGLPLVPGSDG 138

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSWNHGDQ 165
            I            I  P +IK   GG   G+ V+  +  +         ++ +      
Sbjct: 139 AITDVEEAKALAAEIGYPVLIKAASGGGGRGMKVVPSEDQLETLMQQAGSEAKAAFGDAT 198

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+Y+ +   +   V GD +     +            K             I  +  
Sbjct: 199 VYMEKYLGNPRHIEFQVFGDGNGQAIHLGERDCSLQRRHQKVL----EEAPSPIITAEER 254

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +  +   A   +G RG    +FL+   + + +++E+N 
Sbjct: 255 ARMGGVVAKAMADMGYRGAGTIEFLW--ENGEFYFIEMNT 292


>gi|254475342|ref|ZP_05088728.1| acetyl-CoA carboxylase, biotin carboxylase [Ruegeria sp. R11]
 gi|214029585|gb|EEB70420.1| acetyl-CoA carboxylase, biotin carboxylase [Ruegeria sp. R11]
          Length = 450

 Score = 83.2 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 72/220 (32%), Gaps = 18/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---- 109
            +H  +G   E+     I+E   + +         +  DK+ +K  +   GVP  P    
Sbjct: 77  AIHPGYGFLSENANFVQIVEDHGLTFIGPTAEHIRIMGDKITAKDTMKELGVPCVPGSDG 136

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
            +            I  P +IK   GG   G+ V K    +    + + +        D+
Sbjct: 137 GVPDLAAAKKIGEEIGYPVIIKATAGGGGRGMKVAKTAADMEQAFMTARAEGKAAFGNDE 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+Y+     +   V GD       +            K             I  +  
Sbjct: 197 VYIEKYLTTPRHIEIQVFGDGKGKAVHLGERDCSLQRRHQKVF----EEAPGPCITEEER 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             + ++   A   I   G    +FL+   + + +++E+N 
Sbjct: 253 ARIGKICADAVAKINYIGAGTIEFLY--ENGEFYFIEMNT 290


>gi|195575386|ref|XP_002105660.1| GD16261 [Drosophila simulans]
 gi|194201587|gb|EDX15163.1| GD16261 [Drosophila simulans]
          Length = 698

 Score = 83.2 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 81/221 (36%), Gaps = 18/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E      + +   I +      A      K  SK ++++ GVP+      
Sbjct: 102 AIHPGYGFLSESVEFAELCQREGIIFMGPPSSAIRDMGIKSTSKAIMAAAGVPIINGYHG 161

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
           +  + +       +I  P +IK ++GG   G+ + +K       L  + + +        
Sbjct: 162 DDQSDECLQREADIIGFPLMIKAVRGGGGKGMRIAEKPDDFLTALNSARTESEKSFGDSS 221

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           +L+E+YV     +   V  D   D   +           ++          PA  +  D+
Sbjct: 222 VLLERYVRSPRHVEVQVFADQYGDAVYLWE-----RDCSVQRRHQKIIEEAPAPGLSEDL 276

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +E+   A  A +A+G  G    +F+ D       ++E+N 
Sbjct: 277 RRELGEAAVRAAKAVGYVGAGTVEFILDKEDLSFHFMEMNT 317


>gi|170720994|ref|YP_001748682.1| carbamoyl-phosphate synthase L chain ATP-binding [Pseudomonas
           putida W619]
 gi|169758997|gb|ACA72313.1| Carbamoyl-phosphate synthase L chain ATP-binding [Pseudomonas
           putida W619]
          Length = 650

 Score = 83.2 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 41/220 (18%), Positives = 82/220 (37%), Gaps = 19/220 (8%)

Query: 58  LHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
           +H  +G   E+      +E   + +      A      K  +K ++ + GVP+ P    +
Sbjct: 82  IHPGYGFLSENAGFARAIEDAGLIFLGPPASAIDAMGSKSAAKALMEAAGVPLVPGYHGD 141

Query: 115 RFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQL 166
              ++    +   I  P ++K   GG   G+ V++++  +   L  +           ++
Sbjct: 142 AQDLETFRAAAERIGYPVLLKASAGGGGKGMKVVEEESQLAEALASAQREAQSSFGDARM 201

Query: 167 LIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIY 224
           L+E+YV     +   V  D   +   +            K          PA  +  ++ 
Sbjct: 202 LVEKYVLKPRHVEIQVFADQHGNCLYLNERDCSIQRRHQK-----VVEEAPAPGLSPELR 256

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +   A  A QAIG  G    +FL D    + F++E+N 
Sbjct: 257 RAMGEAAVRAAQAIGYVGAGTVEFLLDAR-GEFFFMEMNT 295


>gi|254714257|ref|ZP_05176068.1| propionyl-CoA carboxylase, alpha subunit [Brucella ceti M644/93/1]
 gi|254717693|ref|ZP_05179504.1| propionyl-CoA carboxylase, alpha subunit [Brucella ceti M13/05/1]
 gi|261219536|ref|ZP_05933817.1| carbamoyl-phosphate synthase subunit L ATP-binding protein
           [Brucella ceti M13/05/1]
 gi|261322031|ref|ZP_05961228.1| carbamoyl-phosphate synthase subunit L ATP-binding protein
           [Brucella ceti M644/93/1]
 gi|260924625|gb|EEX91193.1| carbamoyl-phosphate synthase subunit L ATP-binding protein
           [Brucella ceti M13/05/1]
 gi|261294721|gb|EEX98217.1| carbamoyl-phosphate synthase subunit L ATP-binding protein
           [Brucella ceti M644/93/1]
          Length = 667

 Score = 83.2 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 44/240 (18%), Positives = 85/240 (35%), Gaps = 16/240 (6%)

Query: 34  SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDK 93
           S I +D+ +   +     D      +G   E+      L+   + +    + A     DK
Sbjct: 59  SYIVIDK-ILAAIKETGADAVHPG-YGFLSENPRFAEALKAANVTFIGPPVNAIDAMGDK 116

Query: 94  MRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQS 149
           + SK++ +  GV   P  +      D        I  P +IK   GG   G+ +   D+ 
Sbjct: 117 ITSKKLAAEAGVSTVPGHMGLIEDADEAVRIAGSIGYPVMIKASAGGGGKGMRIAWNDEE 176

Query: 150 ----IPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYEL 204
                 L   ++ S    D++ IE++ +    +   V+GD   +V  +   +        
Sbjct: 177 AREGFQLSRNEAKSSFGDDRIFIEKFVIQPRHIEIQVLGDQHGNVVYLGERECSIQRRNQ 236

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K             +     K +   A    +A+G       +F+ D  +R  ++LE+N 
Sbjct: 237 K----VIEEAPSPFLDEATRKAMGEQAVALAKAVGYYSAGTVEFIVDG-NRNFYFLEMNT 291


>gi|268680466|ref|YP_003304897.1| carbamoyl-phosphate synthase L chain ATP- binding protein
           [Sulfurospirillum deleyianum DSM 6946]
 gi|268618497|gb|ACZ12862.1| Carbamoyl-phosphate synthase L chain ATP- binding protein
           [Sulfurospirillum deleyianum DSM 6946]
          Length = 481

 Score = 83.2 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 42/247 (17%), Positives = 89/247 (36%), Gaps = 24/247 (9%)

Query: 32  KVSQIDVD-RSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILAS 87
              ++ +D +++  +   +  D     +H  +G   E+           I +        
Sbjct: 58  DPIRVYLDYKNIVEIAKKVGAD----AIHPGYGFLSENPDFAQHCIDNGIIFIGPKPEHI 113

Query: 88  ALSMDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIV 143
           AL  DKM SK  + + GVPV       I      +     I  P +IK   GG   G+ +
Sbjct: 114 ALFGDKMASKVAMKAVGVPVIEGTDTPITDINEAIKIAKEIGFPVIIKAAFGGGGKGMRI 173

Query: 144 IKKDQS----IPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSD 198
           +KK++           ++  +       IE+Y+ +   +   ++ D   +V         
Sbjct: 174 VKKEEEFVAMFEAATKEAERFFGRGDAFIEKYLSNPRHIEVQIVADKYGNVI-----HLG 228

Query: 199 FYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
                ++        + P  ++   + KE+ R +  A   +G   +   ++L D      
Sbjct: 229 ERDCSIQRKHQKVVEIAPSPRLNDTVRKELLRTSKKAMIKLGYESVGTVEYLVDEEDN-F 287

Query: 258 FWLEINV 264
           +++E+N 
Sbjct: 288 YFIEMNT 294


>gi|149916372|ref|ZP_01904892.1| acetyl-CoA carboxylase, biotin carboxylase [Roseobacter sp.
           AzwK-3b]
 gi|149809826|gb|EDM69678.1| acetyl-CoA carboxylase, biotin carboxylase [Roseobacter sp.
           AzwK-3b]
          Length = 449

 Score = 83.2 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 74/220 (33%), Gaps = 18/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---- 109
            +H  +G   E+     I+E   + +         +  DK+ +K  + + GVP  P    
Sbjct: 77  AIHPGYGFLSENANFVQIVEDHGLTFIGPTAEHIRIMGDKITAKDTMKALGVPCVPGSDG 136

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
            +            I  P +IK   GG   G+ V +    +    +    ++ +    D+
Sbjct: 137 GVPTLAEAKRLGEEIGYPVIIKATAGGGGRGMKVAQTAADMERAFMTARSEAKAAFGNDE 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+Y+     +   V GD       +            K             I  +  
Sbjct: 197 VYIEKYLQTPRHIEIQVFGDGKGGAVHLGERDCSLQRRHQKVF----EEAPGPCITAEER 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             + +    A  AI   G    +FL++    + +++E+N 
Sbjct: 253 ARIGKTCADAVAAINYAGAGTIEFLYEH--GEFYFIEMNT 290


>gi|134298929|ref|YP_001112425.1| acetyl-CoA carboxylase, biotin carboxylase [Desulfotomaculum
           reducens MI-1]
 gi|134051629|gb|ABO49600.1| acetyl-CoA carboxylase carboxyltransferase subunit alpha
           [Desulfotomaculum reducens MI-1]
          Length = 448

 Score = 83.2 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 76/220 (34%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     I E   I +      A     +K  ++  +    VPV P    
Sbjct: 77  AIHPGYGFLAENANFAEICEDCGIAFIGPSRHAIEFMGNKALARNTMIKANVPVVPGSEG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGDQ 165
            +      +     I  P +IK   GG   G+ V   ++ +   +     ++ +      
Sbjct: 137 AVSDEEEVIRIAKEIGYPVLIKASAGGGGRGMRVAHSEEDLLKAINTAKNEAQAAFGNGD 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+YV+    +   ++GD   ++  +            K             +  ++ 
Sbjct: 197 VYLEKYVEQPRHIEFQILGDKEGNIVYLGERDCSVQRRNQK----VIEEAPSVALTPELR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +   A  A QA+        +FL D  +   +++E+N 
Sbjct: 253 RVMGDTAVKAAQAVNYYNAGTVEFLLDK-NNNFYFIEMNT 291


>gi|260554167|ref|ZP_05826426.1| methylcrotonoyl-Coenzyme A carboxylase 1 [Acinetobacter sp.
           RUH2624]
 gi|260404709|gb|EEW98220.1| methylcrotonoyl-Coenzyme A carboxylase 1 [Acinetobacter sp.
           RUH2624]
          Length = 663

 Score = 83.2 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 80/221 (36%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       +   I +    + A      K  SK ++   GVP+ P    
Sbjct: 77  AVHPGYGFLSENDQFALACQQHNICFIGPPVDAILAMGLKATSKALMEKAGVPLTPGYHG 136

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
                D        I  P +IK   GG   G+ ++++ +     L     ++ S    D 
Sbjct: 137 TNQDADFLKQQADRIGYPVLIKASAGGGGKGMSLVERSEDFLHALASCKREAKSSFGNDD 196

Query: 166 LLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDI 223
           +LIE+Y +    +   V GD   +               ++          PA ++P + 
Sbjct: 197 VLIERYVIQPRHIEVQVFGDTHGNYV-----HLFERDCSVQRRHQKVLEEAPAPQMPSEK 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +++ A  A +A+   G    +F+        +++E+N 
Sbjct: 252 LEAMRQAAIDAARAVNYVGAGTVEFIV-EQDGTAYFMEMNT 291


>gi|159902609|ref|YP_001549953.1| acetyl-CoA carboxylase biotin carboxylase subunit [Prochlorococcus
           marinus str. MIT 9211]
 gi|159887785|gb|ABX07999.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Prochlorococcus
           marinus str. MIT 9211]
          Length = 448

 Score = 83.2 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 77/220 (35%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+     +     I +      A     DK  +K  +   GVP  P    
Sbjct: 78  AIHPGYGFLAENDRFAEMCSDHGIVFVGPSANAIRSMGDKATAKSTMMKVGVPTVPGTDG 137

Query: 112 LVNRFTMDS--QHLISPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSWNHGDQ 165
           L++     +     +  P +IK   GG   G+ ++    SI         ++ +      
Sbjct: 138 LLSSSEEAAFLASEMGYPVMIKATAGGGGRGMRLVNGPDSIEDLFKAAQGEAEAAFGNPG 197

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           L +E+++D    +   ++ D   +V  +            K    +     PA +   + 
Sbjct: 198 LYMEKFIDRPRHVEVQILADRHGNVVHLGERDCSIQRRHQKLLEESP---SPA-LDSQLR 253

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            ++   A  A ++I   G    +FL D      +++E+N 
Sbjct: 254 IKMGEAAVSAAKSIKYEGAGTVEFLLDRQGN-FYFMEMNT 292


>gi|328876428|gb|EGG24791.1| propionyl-CoA carboxylase [Dictyostelium fasciculatum]
          Length = 699

 Score = 83.2 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 41/224 (18%), Positives = 83/224 (37%), Gaps = 26/224 (11%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      LE + + +      A     DK+ SK++  + GV V P  + 
Sbjct: 108 AVHPGYGFLSENSRFVKELEKIGVTFIGPNSYAMHALGDKIESKKIAKAAGVSVIPGFIG 167

Query: 114 NRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
               ++      + I  P ++K   GG   G+ +   D+ + +    S          D+
Sbjct: 168 EVDGIEQVIKIANEIGYPVMVKASAGGGGKGMRIAWNDEDVKIGYRLSKQEAKSSFGDDR 227

Query: 166 LLIEQYVD-GIELTCGVMGDAS----LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
           +LIE+Y+D G  +   V+ D          E ++ +          +           + 
Sbjct: 228 MLIEKYIDRGRHIEIQVLSDGETALYFPERECSIQRR---------NQKVVEEAPSPFLD 278

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +    + + A    +A+G +     +FL D      ++LE+N 
Sbjct: 279 DETRTAMGKQAVALCKAVGYKSAGTVEFLVDEKKN-FYFLEMNT 321


>gi|124005905|ref|ZP_01690743.1| acetyl-CoA carboxylase, biotin carboxylase [Microscilla marina ATCC
           23134]
 gi|123988588|gb|EAY28229.1| acetyl-CoA carboxylase, biotin carboxylase [Microscilla marina ATCC
           23134]
          Length = 447

 Score = 83.2 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 80/220 (36%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+     I    +I +  +         DK  +K  + + GVPV P    
Sbjct: 77  AIHPGYGFLSENADFSRICAEHDIKFIGASPEMINSMGDKASAKDTMKAAGVPVVPGSDG 136

Query: 112 LVNRFTMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLD-----LLQSSSWNHGD 164
           L+       +    I  P +IK   GG   G+ +IK D+              +++ +  
Sbjct: 137 LLESAEQGKKLAVEIGYPVIIKATAGGGGRGMRIIKSDEEFENAWNSATAEAEAAFGNAG 196

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             + +  V+   +   + GD S     ++           K             +  ++ 
Sbjct: 197 MYMEKFVVEPRHVEIQIAGDQSGKACHLSERDCSIQRRHQK----LVEETPSPIMTPELR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +E+   A  A +AIG  G+   +FL D    K +++E+N 
Sbjct: 253 EEMGMAAVRAAEAIGYEGVGTVEFLVDKY-NKFYFMEMNT 291


>gi|126701215|ref|YP_001090112.1| carbamoyl phosphate synthase large subunit [Clostridium difficile
           630]
 gi|255094544|ref|ZP_05324022.1| carbamoyl phosphate synthase large subunit [Clostridium difficile
           CIP 107932]
 gi|260685109|ref|YP_003216394.1| carbamoyl phosphate synthase large subunit [Clostridium difficile
           CD196]
 gi|260688767|ref|YP_003219901.1| carbamoyl phosphate synthase large subunit [Clostridium difficile
           R20291]
 gi|306521869|ref|ZP_07408216.1| carbamoyl phosphate synthase large subunit [Clostridium difficile
           QCD-32g58]
 gi|115252652|emb|CAJ70495.1| Carbamoyl-phosphate synthase large chain 1 [Clostridium difficile]
 gi|260211272|emb|CBA66826.1| carbamoyl-phosphate synthase, pyrimidine-specific, large chain
           [Clostridium difficile CD196]
 gi|260214784|emb|CBE07504.1| carbamoyl-phosphate synthase, pyrimidine-specific, large chain
           [Clostridium difficile R20291]
          Length = 1068

 Score = 83.2 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 39/288 (13%), Positives = 98/288 (34%), Gaps = 30/288 (10%)

Query: 22  CASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ--- 69
           C  +L   G +   +         D D S  L    L  +   N++     E  ++Q   
Sbjct: 580 CVKSLRKMGIETIIVNNNPETVSTDFDTSDKLYFEPLTEEEVLNIIEKEKPEGVILQFGG 639

Query: 70  -------AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV--PVCPSILVNRFTMDS 120
                    L    IP   +       + D+ +   ++    +  P    +      ++ 
Sbjct: 640 QTAIKLAKFLHEKNIPILGTDFRDIDAAEDREKFDDLLERLDINRPKGKGVWTTNEGVEI 699

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P +++P       G+ +   ++ +   L  +   +H + +LI++Y+ G E+   
Sbjct: 700 AKELGYPVLVRPSYVLGGQGMEITYNEEKLIQYLDDAFDRDHKNPVLIDKYLTGREIEVD 759

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
            + D    +    +   +       +S  ++T      I  +I +++          +  
Sbjct: 760 AICDKEDILIPGIMEHLERAGV---HSGDSTTMYPSQNISDEIKEKIVEYTKKIALDLNV 816

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
            G+    F+      +++ +E+N +   T     P ++  +G    +L
Sbjct: 817 LGMVNIQFI--EFQNELYIIEVNPRASRT----VPYISKVSGVPIVDL 858



 Score = 62.8 bits (152), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 49/289 (16%), Positives = 106/289 (36%), Gaps = 39/289 (13%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQID-------VDRSVGL--------------V 45
           G ++E + S   G     AL++ G +V  ++        D+ +                +
Sbjct: 21  GQAAEFDYS---GTQACQALKEEGIEVVLVNSNPATIMTDKEIADKIYIEPLTIEFIEKI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDG-------LVQAILELLEIPYTHSGILASALSMDKMRSKQ 98
           +   +PD   ++L G  G+ G           IL+   +    + I +     D+   ++
Sbjct: 78  IEKERPD---SLLAGMGGQTGLNLAVELHDAGILDKYNVKVIGTSIESIKKGEDRDLFRE 134

Query: 99  VVSSCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
           V+     PV  S +V      ++  + I  P V++P       G  +   ++ +   L  
Sbjct: 135 VMKEINQPVIVSDIVTNLEAGLEFANKIGYPVVVRPAYTLGGTGGGIADTEEELREILSH 194

Query: 157 SSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215
               +   Q+L+E+ + G  E+   VM D + +   I V   +       ++  +     
Sbjct: 195 GLQLSPVGQVLLEKSIKGWKEIEYEVMRDGNGN--CITVCNMENVDPVGVHTGDSIVVAP 252

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              +  + Y+ +++ +     AI  +G        +P S +   +EIN 
Sbjct: 253 SQTLSDEEYQLLRKASIDIINAIEVQGGCNVQIALNPHSLEYAIIEINP 301


>gi|24651757|ref|NP_651896.1| CG2118, isoform A [Drosophila melanogaster]
 gi|23172804|gb|AAF57199.2| CG2118, isoform A [Drosophila melanogaster]
 gi|33589591|gb|AAQ22562.1| GM14617p [Drosophila melanogaster]
 gi|220951634|gb|ACL88360.1| CG2118-PA [synthetic construct]
          Length = 698

 Score = 82.9 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 80/221 (36%), Gaps = 18/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E      + +   I +      A      K  SK ++++ GVP+      
Sbjct: 102 AIHPGYGFLSESVEFAELCQREGIIFMGPPSSAIRDMGIKSTSKAIMAAAGVPIINGYHG 161

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
           +  + +        I  P +IK ++GG   G+ + +K       L  + + +        
Sbjct: 162 DDQSDECLQREADKIGFPLMIKAVRGGGGKGMRIAEKPDDFLTALNSARTESEKSFGDSS 221

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           +L+E+YV     +   V  D   D   +           ++          PA  +  D+
Sbjct: 222 VLLERYVRSPRHVEVQVFADQYGDAVYLWE-----RDCSVQRRHQKIIEEAPAPGLSEDL 276

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +E+   A  A +A+G  G    +F+ D       ++E+N 
Sbjct: 277 RRELGEAAVRAAKAVGYVGAGTVEFILDKEDLSFHFMEMNT 317


>gi|39934479|ref|NP_946755.1| putative urea amidolyase [Rhodopseudomonas palustris CGA009]
 gi|39648328|emb|CAE26848.1| putative urea amidolyase [Rhodopseudomonas palustris CGA009]
          Length = 1182

 Score = 82.9 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 33/220 (15%), Positives = 81/220 (36%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      L+   I +             K R++++     VP+ P   +
Sbjct: 77  AVHPGYGFLSENRGFAERLKQHGIAFIGPRPEHLEAFGLKHRARELAQGSNVPLLPGTGL 136

Query: 114 NRF---TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ----SSSWNHGDQL 166
                  +++   I  P ++K   GG  +G+ +   + ++          + +     ++
Sbjct: 137 IDSIDEALEAAARIGFPLMLKSTAGGGGIGMQLCHDEATLRERFATVQRTARASFGDARV 196

Query: 167 LIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIY 224
            +E++V D   +   + GD   +V  +           L+  +       PA  I  ++ 
Sbjct: 197 YLERFVADARHIEVQIFGDGQGNVIALGE-----RDCSLQRRNQKVVEETPAPGISDEMR 251

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             + + A    Q++        +F++D    + ++LE+N 
Sbjct: 252 ARLHQAAVALGQSVAYESAGTVEFIYDVARDEFYFLEVNT 291


>gi|93005992|ref|YP_580429.1| acetyl-CoA carboxylase, biotin carboxylase [Psychrobacter
           cryohalolentis K5]
 gi|92393670|gb|ABE74945.1| acetyl-CoA carboxylase, biotin carboxylase [Psychrobacter
           cryohalolentis K5]
          Length = 453

 Score = 82.9 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 41/220 (18%), Positives = 83/220 (37%), Gaps = 19/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---S 110
            +H  +G   E+      +E   + +         L  +K+ +   +   GVP  P    
Sbjct: 77  AIHPGYGFLAENAEFAERIEEAGLTFVGPTADHIRLMGNKVSAINAMKKAGVPTVPGSVG 136

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGDQL 166
            +      +    I  P +IK   GG   G+ V+++ + I         ++  W   D +
Sbjct: 137 AVTLHNAEEQARNIGFPLLIKAAAGGGGRGMRVVERFEEIIGQVQAAKQEAELWFGDDTV 196

Query: 167 LIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIY 224
            +E+Y+ +   +   V+GD + +   +           L+          PA  IP D+ 
Sbjct: 197 YMERYLQNPRHVEIQVLGDGNGNAIHLY-----DRDCSLQRRHQKVLEEAPAPDIPDDVR 251

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +      A + +  RG    +FLF   + + F++E+N 
Sbjct: 252 QPILDACVKACKLVKYRGAGTFEFLF--ENNEYFFIEMNT 289


>gi|309791144|ref|ZP_07685677.1| carbamoyl-phosphate synthase L chain ATP-binding [Oscillochloris
           trichoides DG6]
 gi|308226842|gb|EFO80537.1| carbamoyl-phosphate synthase L chain ATP-binding [Oscillochloris
           trichoides DG6]
          Length = 509

 Score = 82.9 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 47/225 (20%), Positives = 89/225 (39%), Gaps = 24/225 (10%)

Query: 56  NVLHGNFG---EDGLV-QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           N +H  +G   E+    Q +++   + +         L  DK+R+K++     VP  P I
Sbjct: 104 NAIHPGWGFLAENADFAQKVID-AGLIWIGPKPEVIRLMGDKIRAKEIAKQSNVPTVPGI 162

Query: 112 -----LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH---- 162
                         +  ++ P +IK   GG   G++ I     I   L Q+ S       
Sbjct: 163 ENVTSAEQIIEWMQKERVAFPIMIKAAAGGGGKGMVKIDSTDQIAAGLAQARSEAKKSFK 222

Query: 163 GDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK--I 219
            D +L+E+Y++ G  +   ++ D    V  +       Y  E      N   +  A   +
Sbjct: 223 DDTVLVEKYIEHGRHIEVQIVADEYQHVVHL-------YDRECTLQRRNQKIIEEAPSTL 275

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             D+ +E+   A    + IG       +F+F+P ++  ++LE+N 
Sbjct: 276 ESDLRQEICVTAARLMRRIGYTSAGTVEFIFEPSTQSFYFLEVNT 320


>gi|189188736|ref|XP_001930707.1| methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial
           precursor [Pyrenophora tritici-repentis Pt-1C-BFP]
 gi|187972313|gb|EDU39812.1| methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial
           precursor [Pyrenophora tritici-repentis Pt-1C-BFP]
          Length = 682

 Score = 82.9 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 36/210 (17%), Positives = 73/210 (34%), Gaps = 13/210 (6%)

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT----MD 119
           E+       +   + +      A      K  SK +++  GVP  P    +        +
Sbjct: 82  ENPTFARKCKDAGLTFIGPPWQAIESMGSKSESKDIMTKAGVPCIPGYHGSNQDPEYLKE 141

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQLLIEQYVD-G 174
               I  P ++K +KGG   G+ ++  +      L  + S        + +L+E+Y+   
Sbjct: 142 QAASIGYPVLLKAVKGGGGKGMRIVNTEAEFFDQLASAKSEARNSFGDEVMLVEKYITTP 201

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
             +   V  D   +   +            K             +   I +++   A  A
Sbjct: 202 RHIEVQVFADKHGNCVALGERDCSIQRRHQKIL----EESPAPHLDEAIRQDIWEKARQA 257

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             A+G  G    +F+FD  + + F++E+N 
Sbjct: 258 ALAVGYEGAGTVEFIFDNDTGEFFFMEMNT 287


>gi|256159925|ref|ZP_05457643.1| propionyl-CoA carboxylase, alpha subunit [Brucella ceti M490/95/1]
 gi|256255155|ref|ZP_05460691.1| propionyl-CoA carboxylase, alpha subunit [Brucella ceti B1/94]
 gi|261222352|ref|ZP_05936633.1| carbamoyl-phosphate synthase subunit L [Brucella ceti B1/94]
 gi|265998317|ref|ZP_06110874.1| carbamoyl-phosphate synthase subunit L ATP-binding protein
           [Brucella ceti M490/95/1]
 gi|260920936|gb|EEX87589.1| carbamoyl-phosphate synthase subunit L [Brucella ceti B1/94]
 gi|262552785|gb|EEZ08775.1| carbamoyl-phosphate synthase subunit L ATP-binding protein
           [Brucella ceti M490/95/1]
          Length = 667

 Score = 82.9 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 45/240 (18%), Positives = 85/240 (35%), Gaps = 16/240 (6%)

Query: 34  SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDK 93
           S I +D+ +   +     D      +G   E+      L+   + +    + A     DK
Sbjct: 59  SYIVIDK-ILAAIKETGADAVHPG-YGFLSENPRFAEALKAANVTFIGPPVNAIDAMGDK 116

Query: 94  MRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQS 149
           + SK++ +  GV   P  +      D        I  P +IK   GG   G+ +   D+ 
Sbjct: 117 ITSKKLAAEAGVSTVPGHMGLIEDADEAVRIAGSIGYPVMIKASAGGGGKGMRIAWNDEE 176

Query: 150 ----IPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYEL 204
                 L   ++ S    D++ IE++V     +   V+GD   +V  +   +        
Sbjct: 177 AREGFQLSRNEAKSSFGDDRIFIEKFVTQPRHIEIQVLGDQHGNVVYLGERECSIQRRNQ 236

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K             +     K +   A    +A+G       +F+ D  +R  ++LE+N 
Sbjct: 237 K----VIEEAPSPFLDEATRKAMGEQAVALAKAVGYYSAGTVEFIVDG-NRNFYFLEMNT 291


>gi|251778785|ref|ZP_04821705.1| pyruvate carboxylase [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
 gi|243083100|gb|EES48990.1| pyruvate carboxylase [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
          Length = 1146

 Score = 82.9 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 52/264 (19%), Positives = 100/264 (37%), Gaps = 32/264 (12%)

Query: 24  SAL-EDAGFKVSQIDVDRSVGLVLAHLKPDLAF--------NVLHGNFG---EDGLVQAI 71
            AL      +  QI   ++ G V A+L  D           + +H  +G   E+      
Sbjct: 41  RALFRTKAHEAYQIG--KNKGPVEAYLNIDEIIKLALKKNVDAIHPGYGFLSENPEFARR 98

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV----NRFTMDSQHLISPP 127
            E + I +            DK++SK V  + GVPV P +       +  M+   +   P
Sbjct: 99  CEEVGIEFIGPKSEMMDQLGDKIKSKIVAKNVGVPVIPGVEKPINCEKEAMEIAGMCGYP 158

Query: 128 YVIKPLKGGSSLGIIVIKKDQSIPLDLLQS-----SSWNHGDQLLIEQYVDG-IELTCGV 181
            +IK   GG   G+ +++ +  +    L +      ++   D + IE+Y++G   +   +
Sbjct: 159 VMIKAAAGGGGRGMRIVRHENELVDAFLSAKNEAKKAFGIDD-MFIEKYIEGPKHIEIQI 217

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGC 240
           +GD   +V  +            K        + PA  +  +  +E+   A    +A+  
Sbjct: 218 LGDKYGNVVHLYERDCSIQRRHQK-----VIEISPALSLTQEKREEICADALKIAKAVDY 272

Query: 241 RGISRSDFLFDPLSRKVFWLEINV 264
           R     +FL D      +++E+N 
Sbjct: 273 RNAGTLEFLVDIHGNH-YFIEMNP 295


>gi|84686582|ref|ZP_01014475.1| acetyl-CoA carboxylase [Maritimibacter alkaliphilus HTCC2654]
 gi|84665495|gb|EAQ11972.1| acetyl-CoA carboxylase [Rhodobacterales bacterium HTCC2654]
          Length = 448

 Score = 82.9 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 80/220 (36%), Gaps = 18/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---- 109
            +H  +G   E+     I+E  ++ +         +  DK+ +K+     G+PV P    
Sbjct: 77  AIHPGYGFLSENANFVQIVEDHDLTFIGPSAAHIRMMGDKITAKETAEKLGIPVVPGSAG 136

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
            +            +  P +IK   GG   G+ V + +  +         ++ +    D+
Sbjct: 137 GVPDIETARKVAAEMGYPVIIKATAGGGGRGMKVAEAEAKLEHAFRTARSEAKAAFGNDE 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+Y+     +   V GD       +        S + ++  +      PA I  +  
Sbjct: 197 VYMEKYLQKPRHIEVQVFGDGKGGGVHLGERD---CSLQRRHQKVFEEAPGPA-ISPEER 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +  +   A   +G  G    +FL+     + +++E+N 
Sbjct: 253 ARIGGICADAIAEMGYAGAGTIEFLY--EDGEFYFIEMNT 290


>gi|302898963|ref|XP_003047952.1| hypothetical protein NECHADRAFT_79968 [Nectria haematococca mpVI
           77-13-4]
 gi|256728884|gb|EEU42239.1| hypothetical protein NECHADRAFT_79968 [Nectria haematococca mpVI
           77-13-4]
          Length = 1841

 Score = 82.9 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 44/251 (17%), Positives = 98/251 (39%), Gaps = 17/251 (6%)

Query: 25  ALEDAGFKVSQIDVDRSVGLVLAHLK-PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
           AL+  G  VS+  ++    L LA     D      +G   E+      +E   + +    
Sbjct: 690 ALKLKGTSVSETYLNIPQILELAKSSSADAVIPG-YGFLAENAEFATAVEEAGMIWVGPT 748

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSL 139
               +    K R++ + +  GVP  P     +      ++    I  P ++K   GG  +
Sbjct: 749 PQQMSDLGLKHRARAIAADAGVPNVPGCDSLLTSLEEALEEGQKIGFPLMLKSTAGGGGI 808

Query: 140 GIIVIKKDQSIPLDLL----QSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAV 194
           G+   K  +S+         Q+++      + +E++V     +   ++GD +  V     
Sbjct: 809 GLSHCKDVESLATTFESVRRQATANFGNGGVFLERFVQRARHVEVQILGDGTGKVI---- 864

Query: 195 PKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
             +      L+          PA  +P+++ ++++  A     ++  R +   +F++D  
Sbjct: 865 -AAGERDCSLQRRHQKVVEESPAIMVPVEVREKMKAAAASLASSVKYRNVGTVEFIYDID 923

Query: 254 SRKVFWLEINV 264
           + + F+LE+N 
Sbjct: 924 TEEFFFLEVNT 934


>gi|217968162|ref|YP_002353668.1| carbamoyl-phosphate synthase, large subunit [Dictyoglomus turgidum
           DSM 6724]
 gi|217337261|gb|ACK43054.1| carbamoyl-phosphate synthase, large subunit [Dictyoglomus turgidum
           DSM 6724]
          Length = 1054

 Score = 82.9 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 60/288 (20%), Positives = 111/288 (38%), Gaps = 37/288 (12%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQID---------------------VDRSVGLV 45
           G ++E + S   G     AL++ G +V  I+                         +  +
Sbjct: 18  GQAAEFDYS---GTQACRALKEEGVEVVLINSNPATIMTDWEMADRIYIEPITAEVIERI 74

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   KPD     L G  G +  ++     ILE   IP   + + + +++ D+   ++ + 
Sbjct: 75  IEKEKPDGIIATLGGQTGLNLAMELASIGILEKYGIPLLGASLESISMAEDRELFRKRME 134

Query: 102 SCGVPVCPSILVNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G PV PS++V       +   +I  P VI+P       G  +++  +     LL+S  
Sbjct: 135 EIGEPVLPSVVVRSMEEGRKALEIIGLPLVIRPAYTLGGTGGGIVESVEEFEKALLRSLK 194

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVT-EIAVPKSDFYSYELKYSSLNSTHVLPA 217
            +   Q L+E+ V G  E+   VM D   +V    ++   D           +S  V P 
Sbjct: 195 LSPVSQALLEKSVVGWKEIEFEVMRDRKGNVITVCSMENVDPMGIHT----GDSIVVAPT 250

Query: 218 KIPLDIYKEVQRLA-FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +   DI  ++ R A      A+   G     +  +P  R+ + +E+N 
Sbjct: 251 QTLNDIEYQMLRTASLKIITALKIEGGCNIQYALNPNKREYYVIEVNP 298



 Score = 60.9 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/209 (12%), Positives = 72/209 (34%), Gaps = 27/209 (12%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ--HLISPPYV 129
           LE        +   +  L+ D+ +  + +    +P      +       +    I  P +
Sbjct: 645 LEKRGFYLLGTSQKSIDLAEDREKFDRFLRKNKIPRPKGFYIRNINEAKEVIEEIGFPVL 704

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL---IEQYVDGIELTCGVMGDAS 186
           ++P        +I++   + +       S +   D +L   ++Q++ G E    ++ D  
Sbjct: 705 LRPSYVLGGRAMIIVYNMEDLE------SYFERKDIILPLWMDQFIVGKEAEVDLLCDGK 758

Query: 187 ---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRG 242
              +      + ++  +S        +ST V P   +  ++  ++   +      +  +G
Sbjct: 759 EVFIPGIMEHIERAGIHS-------GDSTTVFPHYTLSQEVVDKIVDYSTKIALGLEVKG 811

Query: 243 ISRSDFLFDPLSRKVFWLEIN-----VQP 266
           +    ++      +V+ LE N       P
Sbjct: 812 LLNIQYVISSKDEEVYVLEANPRASRTIP 840


>gi|311030977|ref|ZP_07709067.1| acetyl-CoA carboxylase biotin carboxylase subunit [Bacillus sp.
           m3-13]
          Length = 450

 Score = 82.9 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 84/221 (38%), Gaps = 18/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     +     I +      A +    K  +++ +   GVP+ P    
Sbjct: 77  AIHPGYGFLAENSDFAELCRECNITFVGPSPEAISKMGTKDVARETMRKAGVPIVPGSQG 136

Query: 111 ILVNRFT-MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGD 164
           I+ N    +   + I  P +IK   GG   GI V + ++ +   +       ++++    
Sbjct: 137 IIENINDGISIANDIGYPVIIKATAGGGGKGIRVARNEEELKKGISITQQEAATAFG-NP 195

Query: 165 QLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            + +E++++    +   VM D   +   +            K             +  +I
Sbjct: 196 GVYLEKFIEDFRHVEIQVMADGHGNTIHLGERDCSIQRRLQK----LVEETPSPVLDEEI 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             ++   A  A +A+   G    +F++D  +RK +++E+N 
Sbjct: 252 RAQMGDAAVKAAEAVDYMGAGTIEFIYDYQNRKFYFMEMNT 292


>gi|195354524|ref|XP_002043747.1| GM16413 [Drosophila sechellia]
 gi|194128947|gb|EDW50990.1| GM16413 [Drosophila sechellia]
          Length = 689

 Score = 82.9 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 81/221 (36%), Gaps = 18/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E      + +   I +      A      K  SK ++++ GVP+      
Sbjct: 102 AIHPGYGFLSESVEFAELCQREGIIFMGPPSSAIRDMGIKSTSKAIMAAAGVPIINGYHG 161

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
           +  + +       +I  P +IK ++GG   G+ + +K       L  + + +        
Sbjct: 162 DDQSDECLQREADIIGFPLMIKAVRGGGGKGMRIAEKPDDFLTALNSARTESEKSFGDSS 221

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           +L+E+YV     +   V  D   D   +           ++          PA  +  D+
Sbjct: 222 VLLERYVRSPRHVEVQVFADHYGDAVYLWE-----RDCSVQRRHQKIIEEAPAPGLSEDL 276

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +E+   A  A +A+G  G    +F+ D       ++E+N 
Sbjct: 277 RRELGEAAVRAAKAVGYVGAGTVEFILDKEDLSFHFMEMNT 317


>gi|72161932|ref|YP_289589.1| Acetyl/propionyl-CoA carboxylase alpha subunit [Thermobifida fusca
           YX]
 gi|71915664|gb|AAZ55566.1| similar to Acetyl/propionyl-CoA carboxylase alpha subunit
           [Thermobifida fusca YX]
          Length = 1849

 Score = 82.9 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 42/214 (19%), Positives = 78/214 (36%), Gaps = 13/214 (6%)

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVNR 115
           G   ED     + E L + +      A     DK+ +K +    GVPV P     +    
Sbjct: 120 GFVAEDPAFAELCEQLGVTFIGPSPHAMRQLGDKIGAKLLAEQVGVPVAPWSRGPVTTLD 179

Query: 116 FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGDQLLIEQY 171
             + +   I  P ++K   GG   GI +I  +  +         +++     D + +E  
Sbjct: 180 EAIAAARTIGYPLMLKAAAGGGGRGIRIITTEAELVDTYERARQEAARAFGSDTVFLESL 239

Query: 172 VDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
           V G   +   V+ D       + V          K    +++ V    +      +++  
Sbjct: 240 VTGARHVEVQVIADGQGTAWALGVRDCSVQRRNQKIIEESASPV----LSPVQAADLKAA 295

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           A     A+G RG +  +FL+ P  +   +LE+N 
Sbjct: 296 AERLALAVGYRGAATVEFLYRPDDKLFAFLEVNT 329


>gi|24651759|ref|NP_733456.1| CG2118, isoform B [Drosophila melanogaster]
 gi|23172805|gb|AAN14292.1| CG2118, isoform B [Drosophila melanogaster]
 gi|25012736|gb|AAN71461.1| RE65842p [Drosophila melanogaster]
 gi|220950566|gb|ACL87826.1| CG2118-PB [synthetic construct]
          Length = 634

 Score = 82.9 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 80/221 (36%), Gaps = 18/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E      + +   I +      A      K  SK ++++ GVP+      
Sbjct: 38  AIHPGYGFLSESVEFAELCQREGIIFMGPPSSAIRDMGIKSTSKAIMAAAGVPIINGYHG 97

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
           +  + +        I  P +IK ++GG   G+ + +K       L  + + +        
Sbjct: 98  DDQSDECLQREADKIGFPLMIKAVRGGGGKGMRIAEKPDDFLTALNSARTESEKSFGDSS 157

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           +L+E+YV     +   V  D   D   +           ++          PA  +  D+
Sbjct: 158 VLLERYVRSPRHVEVQVFADQYGDAVYLWE-----RDCSVQRRHQKIIEEAPAPGLSEDL 212

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +E+   A  A +A+G  G    +F+ D       ++E+N 
Sbjct: 213 RRELGEAAVRAAKAVGYVGAGTVEFILDKEDLSFHFMEMNT 253


>gi|259416676|ref|ZP_05740596.1| acetyl-CoA carboxylase, biotin carboxylase [Silicibacter sp.
           TrichCH4B]
 gi|259348115|gb|EEW59892.1| acetyl-CoA carboxylase, biotin carboxylase [Silicibacter sp.
           TrichCH4B]
          Length = 449

 Score = 82.9 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 33/220 (15%), Positives = 72/220 (32%), Gaps = 18/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---- 109
            +H  +G   E+     I+E   + +            DK+ +K    + G+P  P    
Sbjct: 77  AIHPGYGFLSENANFVQIVEDHGLTFIGPSAEHIRQMGDKITAKDTAKALGIPCVPGSDG 136

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGDQ 165
            +            +  P +IK   GG   G+ V + +  +         ++ +    D+
Sbjct: 137 GVPDVETAKTVAADMGYPVIIKATAGGGGRGMKVAQTEADLVHAFQTARSEAKAAFGNDE 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+Y+     +   V GD       +            K             I  +  
Sbjct: 197 VYMEKYLQRPRHIEIQVFGDGKGGGVHLGERDCSLQRRHQKVF----EEAPGPCISEEER 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             + ++   A   +G  G    +FL+     + +++E+N 
Sbjct: 253 ARIGKICADAIGKMGYSGAGTVEFLY--EDGEFYFIEMNT 290


>gi|238059038|ref|ZP_04603747.1| acetyl/propionyl-CoA carboxylase alpha subunit [Micromonospora sp.
           ATCC 39149]
 gi|237880849|gb|EEP69677.1| acetyl/propionyl-CoA carboxylase alpha subunit [Micromonospora sp.
           ATCC 39149]
          Length = 1850

 Score = 82.9 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 46/238 (19%), Positives = 86/238 (36%), Gaps = 23/238 (9%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
           +++   L     D A+ V  G   ED     + E + + +      A     DK+ +K +
Sbjct: 102 KALERALVETGADAAW-VGWGFVAEDPAFAELCERVGVTFVGPSADAMRKLGDKIGAKLI 160

Query: 100 VSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
               GVPV P     +      + +   I  P ++K   GG   GI V+     +     
Sbjct: 161 AEEVGVPVAPWSRGAVETLDAALVAAAEIGYPLMLKATAGGGGRGIRVVSNSDELADAYE 220

Query: 156 ----QSSSWNHGDQLLIEQYVDG-IELTCGVMGDA----SLDVTEIAVPKSDFYSYELKY 206
               +++       + +E+ V G   +   V+ D     +L V + +V +          
Sbjct: 221 RTSQEAARAFGSGVVFLERLVTGARHVEVQVIADGVTAWALGVRDCSVQRR--------- 271

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +           +      E++  A     A+G RG +  +FL+ P  R   +LE+N 
Sbjct: 272 NQKVIEESASPVLSAAQAAELKASAERLAVAVGYRGAATVEFLYHPGDRLFAFLEVNT 329


>gi|5457424|emb|CAB48407.1| urea amidolyase homologue [Pseudomonas fluorescens]
          Length = 1213

 Score = 82.9 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 39/234 (16%), Positives = 79/234 (33%), Gaps = 27/234 (11%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPV---CPSILVNRFTMDSQHLISPPYVIKP 132
           +I +         +   K  ++ +    GVP+      +      + +   +  P ++K 
Sbjct: 99  DIAFIGPTPEQLRVFGLKHTARDLARRHGVPLLEGTELLDSLDAALLAGTQLGYPVMLKS 158

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQLLIEQYVD-GIELTCGVMGDASL 187
             GG  +G+ V +    +                   + IE+Y++    L   V GD   
Sbjct: 159 TAGGGGIGMRVCRSATDLSESFEAVKRLGQNNFSDAGVFIEKYIERARHLEVQVFGDGQG 218

Query: 188 DVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
            V  + V          K             +P  +  E+   A    QA+  R     +
Sbjct: 219 QVIALGVRDCSVQRRNQKVL----EETPAPNLPEGMADELCAAAIQLAQAVNYRSAGTVE 274

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR----ELLLWMVEDAS 297
           F+FD  + + ++LE+N             +    G + +    +L+ WMV+ A+
Sbjct: 275 FVFDSDAGRFYFLEVNT-----------RLQVEHGVTEQVWGVDLVRWMVQLAA 317


>gi|303322633|ref|XP_003071308.1| Carbamoyl-phosphate synthase L chain, ATP binding domain containing
           protein [Coccidioides posadasii C735 delta SOWgp]
 gi|240111010|gb|EER29163.1| Carbamoyl-phosphate synthase L chain, ATP binding domain containing
           protein [Coccidioides posadasii C735 delta SOWgp]
          Length = 606

 Score = 82.9 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 38/203 (18%), Positives = 81/203 (39%), Gaps = 12/203 (5%)

Query: 69  QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD----SQHLI 124
           Q + E         G    A + DK+++K++  +CGVPV  +I      ++        +
Sbjct: 33  QRMWEEAGAKVIGPGWEVLAQTGDKLQAKELAEACGVPVLKAITQPTSDLNVIKAFAAEV 92

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ-YVDG-IELTCGVM 182
             P +IK + GG   GI +++ + ++   + ++   +   ++ +E+  V+G   +   V+
Sbjct: 93  GYPVMIKAVDGGGGRGIRLVRSEDTLQASVDRAMGESPSKKVFVEKAAVEGYHHVEVQVI 152

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCR 241
           GD +  V  +           ++          PA +    +   V   A      I   
Sbjct: 153 GDGTGQVRHLWE-----RDCSIQRRFQKIVECAPALMKDRKLICLVIEAALRIANRIKYL 207

Query: 242 GISRSDFLFDPLSRKVFWLEINV 264
            +   +FL +    + ++LEIN 
Sbjct: 208 SLGTFEFLVNEQVSEFYFLEINP 230


>gi|194904684|ref|XP_001981043.1| GG11849 [Drosophila erecta]
 gi|190655681|gb|EDV52913.1| GG11849 [Drosophila erecta]
          Length = 698

 Score = 82.9 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 80/221 (36%), Gaps = 18/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E      + +   I +      A      K  SK ++++ GVP+      
Sbjct: 102 AIHPGYGFLSESVEFAELCQREGIIFMGPPSSAIRDMGIKSTSKAIMAAAGVPIINGYHG 161

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
              + +       +I  P +IK ++GG   G+ + +K       L  + + +        
Sbjct: 162 EDQSDECLQREADIIGFPLMIKAVRGGGGKGMRIAEKRDDFLTALNSARTESEKSFGDSS 221

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           +L+E+YV     +   V  D   D   +           ++          PA  +  D+
Sbjct: 222 VLLERYVRSPRHVEVQVFADQYGDAVYLWE-----RDCSVQRRHQKIIEEAPAPGLSEDL 276

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +E+   A  A +A+G  G    +F+ D       ++E+N 
Sbjct: 277 RRELGEAAVRAAKAVGYVGAGTVEFILDKEDLSFHFMEMNT 317


>gi|86740233|ref|YP_480633.1| carbamoyl-phosphate synthase L chain, ATP-binding [Frankia sp.
           CcI3]
 gi|86567095|gb|ABD10904.1| Carbamoyl-phosphate synthase L chain, ATP-binding [Frankia sp.
           CcI3]
          Length = 734

 Score = 82.9 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 89/221 (40%), Gaps = 17/221 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       E   + +    + A  +  DK+ +++ V+  GVPV P    
Sbjct: 73  AVHPGYGFLAENAAFVQACETAGVLFIGPSLAAVQVMGDKITARRTVAEVGVPVVPGRSA 132

Query: 114 ----NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
               +    ++   I  P ++KP  GG   G+ ++++   +P  +     ++++    D 
Sbjct: 133 PGMSDAAIAEAAGQIGYPVLLKPSAGGGGKGMRIVREPARLPEAIASARREAAAGFGDDT 192

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           L +E+++     +   ++ D    V  +   +    S + +Y  +      PA +     
Sbjct: 193 LYVERFITRPRHVEVQILADEHGSVLHLGERE---CSLQRRYQKIVEEAPAPA-LDARTR 248

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLS-RKVFWLEINV 264
           + +   A     A+G  G    +F+    +  + +++E+N 
Sbjct: 249 ERLGGAAVAVASAVGYVGAGTVEFILSADAPDEFYFMEMNT 289


>gi|317473238|ref|ZP_07932535.1| carbamoyl-phosphate synthase [Anaerostipes sp. 3_2_56FAA]
 gi|316899333|gb|EFV21350.1| carbamoyl-phosphate synthase [Anaerostipes sp. 3_2_56FAA]
          Length = 1066

 Score = 82.9 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 49/295 (16%), Positives = 105/295 (35%), Gaps = 34/295 (11%)

Query: 25  ALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGE--------DGLV-------- 68
           AL DAG++   ++ +         +   L F  L     E        DG V        
Sbjct: 582 ALRDAGYETIIVNNNPETVSTDFDVADKLYFEPLTAEDVESIVDLEKPDGAVVQFGGQTA 641

Query: 69  ----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTMDSQH 122
               QA++E+  +P   +       + D+    +++  C +P      V      + + H
Sbjct: 642 IKLTQALMEM-GVPILGTSAENVDAAEDRELFDEILEECCIPRPKGTTVFTCEEALSAAH 700

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            +  P +++P       G+ +   D+ I   +   +       +LI++Y+ G E+    +
Sbjct: 701 ELGYPVLVRPSYVLGGQGMQIAVSDEDIVSFIEIINRQTQEHPILIDKYLVGREVEVDAV 760

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCR 241
            D      EI +P    +       S +S  V P   +   + + +        +++   
Sbjct: 761 CDGE----EIIIPGIMEHIERAGIHSGDSISVYPSINLSEKVKRVIAEYTRKLAKSLNVI 816

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           G+    F+      +V+ +E+N +   T     P ++   G    +L   ++  A
Sbjct: 817 GLINIQFIV--CDEEVYVIEVNPRSSRT----VPYISKVTGIPIVDLAAKVIAGA 865



 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 46/286 (16%), Positives = 96/286 (33%), Gaps = 33/286 (11%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQID-------VDRSVGL--------------V 45
           G ++E + +   G     AL++ G +V  ++        D+ +                +
Sbjct: 21  GQAAEFDYA---GTQACRALQEEGIEVVLVNSNPATIMTDKDIADKVYIEPLTAEVVEKI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   KPD     L G    +  ++      LE   +    +       + D+   K  + 
Sbjct: 78  VEKEKPDSILPTLGGQAALNLAMELEENGFLEKSGVRLIGTSSTTIRKAEDRQEFKDTME 137

Query: 102 SCGVPVCPSILVNR--FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G P+    +V       +    I  P V +P       G  +    + + + L     
Sbjct: 138 KIGEPIAAGKVVTDIPAGAEFAEEIGYPVVCRPAYTLGGSGGGIAHDREELEVILENGLR 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   ++L+E+Y+ G  E+   VM DA+   T I V   +       ++  +        
Sbjct: 198 LSRVGEVLVERYIGGWKEVEYEVMRDANG--TCITVCNMENIDPVGVHTGDSIVVAPSQT 255

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +    Y+ ++  A      +   G     F  +P S +   +E+N 
Sbjct: 256 LGDKEYQMLRTSALNIITELKVNGGCNVQFALNPDSFEYCVIEVNP 301


>gi|313498057|gb|ADR59423.1| Carbamoyl-phosphate synthase L chain, ATP-binding protein
           [Pseudomonas putida BIRD-1]
          Length = 650

 Score = 82.9 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 81/220 (36%), Gaps = 19/220 (8%)

Query: 58  LHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
           +H  +G   E+      +E   + +      A      K  +K ++ + GVP+ P     
Sbjct: 82  IHPGYGFLSENAGFARAIEQAGLIFLGPPASAIDAMGSKSAAKALMEAAGVPLVPGYHGE 141

Query: 115 RFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQL 166
              +D    +   I  P ++K   GG   G+ V++++  +   L  +           ++
Sbjct: 142 AQDLDTFRAAAERIGYPVLLKASAGGGGKGMKVVEEESQLADALASAQREAQSSFGDARM 201

Query: 167 LIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIY 224
           L+E+YV     +   V  D   +   +            K          PA  +  ++ 
Sbjct: 202 LVEKYVLKPRHVEIQVFADQHGNCLYLNERDCSIQRRHQK-----VVEEAPAPGLSPELR 256

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +   A  A QAIG  G    +FL D    + F++E+N 
Sbjct: 257 RAMGEAAVRAAQAIGYVGAGTVEFLLDAR-GEFFFMEMNT 295


>gi|167745331|ref|ZP_02417458.1| hypothetical protein ANACAC_00022 [Anaerostipes caccae DSM 14662]
 gi|167655052|gb|EDR99181.1| hypothetical protein ANACAC_00022 [Anaerostipes caccae DSM 14662]
          Length = 1066

 Score = 82.9 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 49/295 (16%), Positives = 105/295 (35%), Gaps = 34/295 (11%)

Query: 25  ALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGE--------DGLV-------- 68
           AL DAG++   ++ +         +   L F  L     E        DG V        
Sbjct: 582 ALRDAGYETIIVNNNPETVSTDFDVADKLYFEPLTAEDVESIVDLEKPDGAVVQFGGQTA 641

Query: 69  ----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTMDSQH 122
               QA++E+  +P   +       + D+    +++  C +P      V      + + H
Sbjct: 642 IKLTQALMEM-GVPILGTSAENVDAAEDRELFDEILEECCIPRPKGTTVFTCEEALSAAH 700

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            +  P +++P       G+ +   D+ I   +   +       +LI++Y+ G E+    +
Sbjct: 701 ELGYPVLVRPSYVLGGQGMQIAVSDEDIVSFIEIINRQTQEHPILIDKYLVGREVEVDAV 760

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCR 241
            D      EI +P    +       S +S  V P   +   + + +        +++   
Sbjct: 761 CDGE----EIIIPGIMEHIERAGIHSGDSISVYPSINLSEKVKRVIAEYTRKLAKSLNVI 816

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           G+    F+      +V+ +E+N +   T     P ++   G    +L   ++  A
Sbjct: 817 GLINIQFIV--CDEEVYVIEVNPRSSRT----VPYISKVTGIPIVDLAAKVIAGA 865



 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 46/286 (16%), Positives = 96/286 (33%), Gaps = 33/286 (11%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQID-------VDRSVGL--------------V 45
           G ++E + +   G     AL++ G +V  ++        D+ +                +
Sbjct: 21  GQAAEFDYA---GTQACRALQEEGIEVVLVNSNPATIMTDKDIADKVYIEPLTAEVVEKI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   KPD     L G    +  ++      LE   +    +       + D+   K  + 
Sbjct: 78  VEKEKPDSILPTLGGQAALNLAMELEENGFLEKSGVRLIGTSSTTIRKAEDRQEFKDTME 137

Query: 102 SCGVPVCPSILVNR--FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G P+    +V       +    I  P V +P       G  +    + + + L     
Sbjct: 138 KIGEPIAAGKVVTDIPAGAEFAEEIGYPVVCRPAYTLGGSGGGIAHDREELEVILENGLR 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   ++L+E+Y+ G  E+   VM DA+   T I V   +       ++  +        
Sbjct: 198 LSRVGEVLVERYIGGWKEVEYEVMRDANG--TCITVCNMENIDPVGVHTGDSIVVAPSQT 255

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +    Y+ ++  A      +   G     F  +P S +   +E+N 
Sbjct: 256 LGDKEYQMLRTSALNIITELKVNGGCNVQFALNPDSFEYCVIEVNP 301


>gi|160890540|ref|ZP_02071543.1| hypothetical protein BACUNI_02982 [Bacteroides uniformis ATCC 8492]
 gi|156860272|gb|EDO53703.1| hypothetical protein BACUNI_02982 [Bacteroides uniformis ATCC 8492]
          Length = 379

 Score = 82.9 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 30/168 (17%), Positives = 69/168 (41%), Gaps = 5/168 (2%)

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKP 132
           E L +P   + +    +  +K   +++ ++ G+ V P  ++     D   L   PY++KP
Sbjct: 85  EQLGLPSMSTEVAK--ICTNKYLQREMFAANGIDV-PFFMLCDKDTDLGTLQDYPYIVKP 141

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192
           +   +S G+  +   + + L   ++  ++   + ++E ++ G E +       +   T +
Sbjct: 142 VDSSASRGVKKVTNHKELVLAFSEALGYSRTGKAIVEGFITGREFSVETYTQNNK--TTV 199

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
                     E +   +  TH+ PA+I    ++ V      A   IG 
Sbjct: 200 VTITEKLCIGEAEGFFVEDTHIEPARITKQEWELVSETVSKALCLIGL 247


>gi|126699547|ref|YP_001088444.1| biotin carboxylase (acetyl-CoA carboxylase subunit A) [Clostridium
           difficile 630]
 gi|254975533|ref|ZP_05272005.1| biotin carboxylase (acetyl-CoA carboxylase subunit A) [Clostridium
           difficile QCD-66c26]
 gi|255092921|ref|ZP_05322399.1| biotin carboxylase (acetyl-CoA carboxylase subunit A) [Clostridium
           difficile CIP 107932]
 gi|255101066|ref|ZP_05330043.1| biotin carboxylase (acetyl-CoA carboxylase subunit A) [Clostridium
           difficile QCD-63q42]
 gi|255306931|ref|ZP_05351102.1| biotin carboxylase (acetyl-CoA carboxylase subunit A) [Clostridium
           difficile ATCC 43255]
 gi|255314662|ref|ZP_05356245.1| biotin carboxylase (acetyl-CoA carboxylase subunit A) [Clostridium
           difficile QCD-76w55]
 gi|255517336|ref|ZP_05385012.1| biotin carboxylase (acetyl-CoA carboxylase subunit A) [Clostridium
           difficile QCD-97b34]
 gi|255650442|ref|ZP_05397344.1| biotin carboxylase (acetyl-CoA carboxylase subunit A) [Clostridium
           difficile QCD-37x79]
 gi|260683554|ref|YP_003214839.1| biotin carboxylase acetyl-CoA carboxylase subunit A [Clostridium
           difficile CD196]
 gi|260687214|ref|YP_003218348.1| biotin carboxylase acetyl-CoA carboxylase subunit A [Clostridium
           difficile R20291]
 gi|115250984|emb|CAJ68813.1| Acetyl-CoA carboxylase subunit [Clostridium difficile]
 gi|260209717|emb|CBA63475.1| biotin carboxylase (acetyl-CoA carboxylase subunit A) [Clostridium
           difficile CD196]
 gi|260213231|emb|CBE04737.1| biotin carboxylase (acetyl-CoA carboxylase subunit A) [Clostridium
           difficile R20291]
          Length = 453

 Score = 82.9 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 40/237 (16%), Positives = 91/237 (38%), Gaps = 21/237 (8%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRS 96
            ++  +   LK D     +H  FG   E+       E   I +         L  DK R+
Sbjct: 64  ENIIYLALKLKCD----AIHPGFGFLSENPEFAKQCEDNNIIFIGPTREQMILMGDKSRA 119

Query: 97  KQVVSSCGVPVCP---SILVNRFT-MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI-- 150
           ++ +    +PV P   S+L  +   ++    I  P +IK   GG   G+ +++K++ +  
Sbjct: 120 RETMMELNIPVVPGSESVLKTKEEALEVAREIGYPVMIKASSGGGGKGMRIVRKEEELFS 179

Query: 151 --PLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYS 207
              +   ++ +      L +E++++    +   V GD   +   +            K  
Sbjct: 180 NFDMASSEALAAFSNSDLYMEKFIENPRHIEVQVFGDKHSNAIHLGDRDCSMQRRNQK-- 237

Query: 208 SLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
                  L   +  +  +++ ++A    + +G  G    +F+ D   +  +++E+N 
Sbjct: 238 --VIEESLSPYLSDEERQKLHKIAVDIVKGVGYIGAGTIEFIVDK-DKNFYFIEMNT 291


>gi|73662878|ref|YP_301659.1| carbamoyl phosphate synthase large subunit [Staphylococcus
           saprophyticus subsp. saprophyticus ATCC 15305]
 gi|82592666|sp|Q49WY4|CARB_STAS1 RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|72495393|dbj|BAE18714.1| carbamoyl-phosphate synthase large subunit [Staphylococcus
           saprophyticus subsp. saprophyticus ATCC 15305]
          Length = 1057

 Score = 82.9 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 52/297 (17%), Positives = 111/297 (37%), Gaps = 36/297 (12%)

Query: 25  ALEDAGFKVSQID---------------------VDRSVGLVLAHLKPDLAFNVLHGNFG 63
           AL++ G++V  ++                         +  ++   +PD     L G  G
Sbjct: 36  ALKEEGYRVILVNSNPATIMTDNEIADKVYIEPLTHDFIARIIRKEQPDALLPTLGGQTG 95

Query: 64  EDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFT 117
            +  +Q      LE   +    + + +   + D+   + +++  GVPV  S +VN     
Sbjct: 96  LNMAIQLHDSGELEANNVKLLGTELESIQQAEDRELFRTLMNDLGVPVPESDIVNTVEQA 155

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IE 176
              +  +  P +++P       G  +   D      +     ++   Q LIE+ + G  E
Sbjct: 156 FAFKEEVGYPLIVRPAFTMGGTGGGICHNDAEFKEIVTNGLHYSPATQCLIEKSIAGFKE 215

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAH 235
           +   VM D + +   I V   +     +   + +S  V P++ +    Y+ ++ ++    
Sbjct: 216 IEYEVMRDKNDNA--IVVCNMENID-PVGIHTGDSIVVAPSQTLSDVEYQMLRDVSLKVI 272

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +A+G  G        DP S   + +E+N  P ++  S     +   GY   +L   +
Sbjct: 273 RALGIEGGCNVQLALDPHSLDYYIIEVN--PRVSRSS--ALASKATGYPIAKLAAKI 325



 Score = 64.0 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 23/192 (11%), Positives = 68/192 (35%), Gaps = 9/192 (4%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPL 133
           ++    + +     + D+   + ++ +  VP          +  +++   I  P V++P 
Sbjct: 650 DVKILGTSLEDLNRAEDRKEFEALLHTIDVPQPNGKTATSPQEALENARSIGYPVVVRPS 709

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
                  + ++  D  +   + Q+   +    +L+++Y+ G E+    + D    +    
Sbjct: 710 YVLGGRAMEIVNSDAELEDYMNQAVKASPDHPVLVDRYLTGKEIEVDAISDGETVIIPGI 769

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
           +   +           +S  V P + +  +    ++       + +   G+    F+   
Sbjct: 770 MEHIERAGVHS----GDSIAVYPPQTLKQEEMTTLEDFTIRLAKGLNIVGLINIQFVIAH 825

Query: 253 LSRKVFWLEINV 264
               V+ LE+N 
Sbjct: 826 DG--VYVLEVNP 835


>gi|320032953|gb|EFW14903.1| acetyl-/propionyl-coenzyme A carboxylase subunit alpha
           [Coccidioides posadasii str. Silveira]
          Length = 671

 Score = 82.9 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 38/203 (18%), Positives = 81/203 (39%), Gaps = 12/203 (5%)

Query: 69  QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD----SQHLI 124
           Q + E         G    A + DK+++K++  +CGVPV  +I      ++        +
Sbjct: 98  QRMWEEAGAKVIGPGWEVLAQTGDKLQAKELAEACGVPVLKAITQPTSDLNVIKAFAAEV 157

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ-YVDG-IELTCGVM 182
             P +IK + GG   GI +++ + ++   + ++   +   ++ +E+  V+G   +   V+
Sbjct: 158 GYPVMIKAVDGGGGRGIRLVRSEDTLQASVDRAMGESPSKKVFVEKAAVEGYHHVEVQVI 217

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCR 241
           GD +  V  +           ++          PA +    +   V   A      I   
Sbjct: 218 GDGTGQVRHLWE-----RDCSIQRRFQKIVECAPALMKDRKLICLVIEAALRIANRIKYL 272

Query: 242 GISRSDFLFDPLSRKVFWLEINV 264
            +   +FL +    + ++LEIN 
Sbjct: 273 SLGTFEFLVNEQVSEFYFLEINP 295


>gi|306841494|ref|ZP_07474194.1| pyruvate carboxylase [Brucella sp. BO2]
 gi|306288458|gb|EFM59814.1| pyruvate carboxylase [Brucella sp. BO2]
          Length = 1163

 Score = 82.9 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 33/199 (16%), Positives = 69/199 (34%), Gaps = 15/199 (7%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIK 131
            I +            +K+ ++ +    GVPV P+       MD        I  P ++K
Sbjct: 112 GIVFIGPKPETMRRLGNKVAARNLAIEIGVPVVPATDPLPDDMDEVKKLAAQIGYPLMLK 171

Query: 132 PLKGGSSLGIIVIKKDQSIP----LDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDAS 186
              GG   G+  I+ +  +         ++ +    D++ +E+ V+    +   ++GD  
Sbjct: 172 ASWGGGGRGMRAIRSEADLAREVMEAKREAKAAFGKDEVYLEKLVERARHVEVQILGDTH 231

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISR 245
            +   +            K          PA  +  +  +E+         A    G   
Sbjct: 232 GNAVHLFERDCSIQRRNQK-----VVERAPAPYLNDEQRRELADYGLKIAHATDYIGAGT 286

Query: 246 SDFLFDPLSRKVFWLEINV 264
            +FL D  + K +++E+N 
Sbjct: 287 VEFLMDADTGKFYFIEVNP 305


>gi|84687798|ref|ZP_01015668.1| pyruvate carboxylase [Maritimibacter alkaliphilus HTCC2654]
 gi|84664170|gb|EAQ10664.1| pyruvate carboxylase [Rhodobacterales bacterium HTCC2654]
          Length = 1148

 Score = 82.9 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 33/221 (14%), Positives = 77/221 (34%), Gaps = 18/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       +   I +            DK  +++V    GVPV P+  V
Sbjct: 80  AIHPGYGLLSENPEFVDACDKAGIVFIGPKAETMRKLGDKASARKVAIEAGVPVIPATEV 139

Query: 114 ----NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ----SSSWNHGDQ 165
                +        I  P ++K   GG   G+  I+  + +   + +    + +     +
Sbjct: 140 LGDNMKAIAKEAEEIGYPLMLKASWGGGGRGMRPIEGPEELETKIKEGRREAEAAFGNGE 199

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
             +E+ +     +   ++GD   ++  +           ++  +       PA  +    
Sbjct: 200 GYLEKMITRARHVEVQILGDTHGNIYHLWE-----RDCSVQRRNQKVVERAPAPYLSPAQ 254

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +E+  L     + +        +FL D  + K +++E+N 
Sbjct: 255 REEICNLGRKICEHVNYECAGTVEFLMDMETGKFYFIEVNP 295


>gi|312889964|ref|ZP_07749508.1| acetyl-CoA carboxylase, biotin carboxylase [Mucilaginibacter
           paludis DSM 18603]
 gi|311297496|gb|EFQ74621.1| acetyl-CoA carboxylase, biotin carboxylase [Mucilaginibacter
           paludis DSM 18603]
          Length = 457

 Score = 82.9 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 76/220 (34%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+    AI     I +  +         DK  +K  +   GVP  P    
Sbjct: 87  AIHPGYGFLSENAKFSAICAEYNIKFIGATADQINAMGDKASAKATMEKAGVPTIPGSKG 146

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS-----SSWNHGD 164
            +   +  +   + +  P ++K   GG   G+ V+ +D         +     +++ +  
Sbjct: 147 LLSDVKEGISIANKVGYPVILKATAGGGGRGMRVVWQDSEFEAAWDSARAESGAAFGNDG 206

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             L +  VD   +   V+GD    V  ++           K             +   + 
Sbjct: 207 LYLEKYVVDPRHIEIQVVGDQYGKVCHLSERDCSIQRRHQK----LVEESPSPFMTEKLR 262

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K++   A    +A+   G    +FL D   R  +++E+N 
Sbjct: 263 KKMGEAAIKGAKAVRYEGAGTVEFLVDK-DRNFYFMEMNT 301


>gi|307152494|ref|YP_003887878.1| acetyl-CoA carboxylase, biotin carboxylase [Cyanothece sp. PCC
           7822]
 gi|306982722|gb|ADN14603.1| acetyl-CoA carboxylase, biotin carboxylase [Cyanothece sp. PCC
           7822]
          Length = 448

 Score = 82.9 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 77/220 (35%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     I    +I +      A     DK  +K+ +   GVP  P    
Sbjct: 78  AIHPGYGFLAENARFAEICADHKITFIGPSPEAILAMGDKSTAKKTMQRAGVPTIPGSGG 137

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
            I   +   +    I  P +IK   GG   G+ +++ +  +P  L  +            
Sbjct: 138 LIDSEKQAKEIAAQIGYPVLIKATAGGGGRGMRLVRSESELPALLQAAQGEAGAAFGNSG 197

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E++++    +   +  D   +V  +            K             +   + 
Sbjct: 198 VYLEKFIECPRHIEFQIFADQFGNVVHLGERDCSIQRRHQKLL----EEAPSPFLTPKLR 253

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +++ + A  A Q+I   G    +FL D      +++E+N 
Sbjct: 254 EKMGQAAVKAAQSIKYVGAGTVEFLVDKHGN-FYFMEMNT 292


>gi|126741252|ref|ZP_01756931.1| acetyl-CoA carboxylase [Roseobacter sp. SK209-2-6]
 gi|126717657|gb|EBA14380.1| acetyl-CoA carboxylase [Roseobacter sp. SK209-2-6]
          Length = 449

 Score = 82.9 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 74/220 (33%), Gaps = 18/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---- 109
            +H  +G   E+     I+E   I +            DK+ +K      G+PV P    
Sbjct: 77  AVHPGYGFLSENANFVQIIEDHGITFIGPSAEDIRTMGDKITAKDTAKRLGIPVVPGSDG 136

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGDQ 165
            +            +  P +IK   GG   G+ V + +  + +       ++ +    D+
Sbjct: 137 GVPDIATAKVVAADMGYPVIIKATAGGGGRGMKVAETEADLEMAFSTARSEAKAAFGNDE 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+Y+     +   V GD   +   +A           K             I  +  
Sbjct: 197 VYMEKYLQKPRHIEVQVFGDGKGNGVHLAERDCSLQRRHQKVF----EEAPGPCISPEER 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             + ++   A   +   G    +FL+     + +++E+N 
Sbjct: 253 ARIGKICADAVGEMSYSGAGTVEFLY--EDGEFYFIEMNT 290


>gi|254823120|ref|ZP_05228121.1| acetyl-/propionyl-coenzyme A carboxylase alpha chain [Mycobacterium
           intracellulare ATCC 13950]
          Length = 659

 Score = 82.9 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 81/222 (36%), Gaps = 19/222 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+    A  E   + +      A  +  DK+ +K  V++  VPV P +  
Sbjct: 71  AIHPGYGFLSENADFAAACERAGVVFLGPPAQAIQVMGDKITAKNAVAAFDVPVVPGVAK 130

Query: 114 N----RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL-----QSSSWNHGD 164
                   + +   +  P +IKP  GG   G+ ++++   +   L+      +S++   D
Sbjct: 131 PGLNDDALVAAADDVGYPVLIKPSAGGGGKGMRLVEEPAKLREALVSARREAASAFG-DD 189

Query: 165 QLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            L +E++V     +   V+ D   +V  +   +        K             +    
Sbjct: 190 TLFLERFVLRPRHIEVQVLADTHGNVVHLGERECSLQRRHQK----VIEEAPSPLLDEAT 245

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFD-PLSRKVFWLEINV 264
              +   A    +++   G    +F+       + F++E+N 
Sbjct: 246 RARIGAAACNTARSVDYVGAGTVEFIVSAERPDEFFFMEMNT 287


>gi|227904290|ref|ZP_04022095.1| carbamoyl phosphate synthase large subunit [Lactobacillus
           acidophilus ATCC 4796]
 gi|227867938|gb|EEJ75359.1| carbamoyl phosphate synthase large subunit [Lactobacillus
           acidophilus ATCC 4796]
          Length = 1062

 Score = 82.9 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 43/297 (14%), Positives = 97/297 (32%), Gaps = 38/297 (12%)

Query: 22  CASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ--- 69
           C  AL+  G++   I         D   S  L    L  +   NV      E  +VQ   
Sbjct: 577 CVKALQKMGYEAIVINSNPETVSTDFSVSDKLYFEPLTLEDVLNVCDLEEPEGVIVQFGG 636

Query: 70  -------AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDS 120
                  A LE   +    + +     + D+     ++    +     +        +++
Sbjct: 637 QTSINLAAGLEAHGVKILGTTVKDVNRAEDRKLFDDIIKELKLNQPQGLTATTHEGVIEA 696

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P +++P        + ++   + +   L           +L++ Y+DG E    
Sbjct: 697 AEKLDYPVLVRPSYVLGGKAMEIVYNKKELEEYLQDHVDIAADHPILVDDYLDGRECDVD 756

Query: 181 VMGDAS---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQ 236
            + D     L      +  +  +S        +S  V P +    +I +++  +      
Sbjct: 757 AISDGYDVLLPGIMEHIEHAGVHS-------GDSMAVYPPQTFTDEIKEKITEVTKKLAL 809

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            + C GI    F+      +V+ +E+N +   T     P ++   G    ++   ++
Sbjct: 810 TLNCVGIMNIQFIVR--DGEVYVIEVNPRASRT----VPFLSKITGIEMAQVATRVI 860



 Score = 74.4 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 49/289 (16%), Positives = 97/289 (33%), Gaps = 39/289 (13%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI---------DVD------------RSVGLV 45
           G ++E + S   G     AL + G++V  +         D               S+  +
Sbjct: 21  GQAAEFDYS---GTQACLALREEGYQVVLVNSNPATIMTDTTIADKVYIEPLTVDSISRI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +    PD     L G  G +  +      IL+ L I    + + +   + D+ + K +  
Sbjct: 78  IRQEYPDAILPTLGGQVGLNMALALAKTGILDELNIELLGTKLKSIEQAEDREQFKNLCK 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G PV PS  VN     ++    I  P +++P       G  +    + +         
Sbjct: 138 ELGEPVPPSKTVNTVEAAVEFGDEIGYPIIVRPAFTMGGTGGGICHNRKELAEIAKNGLE 197

Query: 160 WNHGDQLLIEQYVDG---IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216
            +   + LIE+ + G   IE       D +  +            +     + +S    P
Sbjct: 198 LSPVTECLIEKSIAGYKEIEFEVMRDHDDNAMIVCCMENFDPVGIH-----TGDSIVFSP 252

Query: 217 AK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           ++ +    Y+ ++  +    +A+   G        DP S     +E+N 
Sbjct: 253 SQTLSDKEYQMLRDCSLKLIRALKIEGGCNVQLALDPNSFDYDVIEVNP 301


>gi|323339842|ref|ZP_08080111.1| carbamoyl-phosphate synthase [Lactobacillus ruminis ATCC 25644]
 gi|323092715|gb|EFZ35318.1| carbamoyl-phosphate synthase [Lactobacillus ruminis ATCC 25644]
          Length = 1061

 Score = 82.9 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 37/232 (15%), Positives = 85/232 (36%), Gaps = 19/232 (8%)

Query: 68  VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV--PVCPSILVNRFTMDSQHLIS 125
           + A LE   +    + +     + D+    QV+++ G+  P+  +       M+  H I 
Sbjct: 642 LAAGLEAHGVKVLGTTVEDLDRAEDRELFDQVINNLGLKQPIGKTATTQEQVMECAHEIG 701

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            P +++P        + ++  D  +   L  ++       +L++ Y++G E     + D 
Sbjct: 702 YPVLVRPSYVLGGRAMEIVNNDAELEEYLSHNAKAEIDHPILVDAYLEGYECEVDAICDG 761

Query: 186 S---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCR 241
               L      +  +  +S        +S  V P +    D+  ++         A+ C 
Sbjct: 762 KDVLLPGIMEHIEHAGVHS-------GDSMAVYPPQSFSQDVKDQIVEATKKLAVALKCI 814

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           GI    F+      + + LE+N +   T     P ++   G    ++   ++
Sbjct: 815 GIMNIQFIIHK--GEAYVLEVNPRASRT----VPFLSKITGIEMTQVATQVI 860



 Score = 75.9 bits (186), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 51/286 (17%), Positives = 101/286 (35%), Gaps = 33/286 (11%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQID---------------------VDRSVGLV 45
           G ++E + S   G     AL + G++V  ++                        SV  +
Sbjct: 21  GQAAEFDYS---GTQACMALREEGYEVVLVNSNPATIMTDTKIADKVYIEPLTTESVSRI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           L    PD     L G  G +  +      IL+ L I    + + A   + D+ + K+++ 
Sbjct: 78  LRQEYPDALLPTLGGQIGLNLAIALAKTGILDELHIELLGTKLEAIDQAEDREKFKELMQ 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
               P+  S  VN     ++    I  P +++P       G  +    Q +         
Sbjct: 138 DLNEPIPASKTVNTVEEALEFADEIGYPVIVRPAFTMGGTGGGMCDNKQQLQEICANGLD 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   Q LIE+ + G  E+   VM D++ +   + V   + +     ++  +        
Sbjct: 198 LSPATQCLIEKSIKGYKEVEYEVMRDSANNA--MVVCSMENFDPVGIHTGDSIVLAPTQT 255

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +    Y+ ++  A    +A+   G        DP S +   +E+N 
Sbjct: 256 LTDREYQMLRDCALKLIRALKIEGGCNVQLALDPNSYEYNVIEVNP 301


>gi|124028019|ref|YP_001013339.1| pyruvate carboxylase subunit A [Hyperthermus butylicus DSM 5456]
 gi|123978713|gb|ABM80994.1| pyruvate carboxylase subunit A [Hyperthermus butylicus DSM 5456]
          Length = 491

 Score = 82.9 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 45/275 (16%), Positives = 85/275 (30%), Gaps = 33/275 (12%)

Query: 19  GKACASALEDAGFKVSQIDVDRSV-----------GLVLAHLKPDLAF--------NVLH 59
               A A+ + G++   I                  +V ++  PD           ++LH
Sbjct: 14  AIRIARAVRELGWEPITIYAPDDAHSPHVRAGTFSVMVESYTNPDSVVEAAIKAGADILH 73

Query: 60  GNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116
             +G   ED      +    I +         L  DK R+KQ+    GVP  P       
Sbjct: 74  PGYGFLSEDPSFARKVLDAGISWAGPKPETMELLGDKHRAKQLAEKVGVPTPPWCEARSA 133

Query: 117 TMDS--QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD-----LLQSSSWNHGDQLLIE 169
                    I  P ++K  K G   G+ V    + +        L   + +     + IE
Sbjct: 134 EEAVRCAERIGYPVMLKASKAGGGRGMRVASNSEEVRRAYRLVSLEARNGFGDAGVVYIE 193

Query: 170 QYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           +YV     +   ++GD    V  +   +        K      +    A+    +   + 
Sbjct: 194 KYVRNPRHIEVQILGDGQGHVVHLYERECSIQRRRQKIIEEAPSPF--AEKVPQVRSRLV 251

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
             A    +    +     +F+ D    + +++E N
Sbjct: 252 DYALRLAEEAEYQSAGTIEFIVDER-GQPYFIEAN 285


>gi|298487192|ref|ZP_07005241.1| Methylcrotonyl-CoA carboxylase biotin-containing subunit
           [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
 gi|298158216|gb|EFH99287.1| Methylcrotonyl-CoA carboxylase biotin-containing subunit
           [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
          Length = 649

 Score = 82.9 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 78/221 (35%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      +E   + +      A      K  +K ++   GVP+ P    
Sbjct: 81  AIHPGYGFLSENADFARAIEEAGLIFLGPPASAIDAMGSKSAAKALMEQAGVPLVPGYHG 140

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
           +   ++    +   I  P ++K   GG   G+ V++    +   L  +           +
Sbjct: 141 DAQDIETFRSAAERIGYPVLLKATAGGGGKGMKVVEHSGELAEALASAQREALSSFGDAR 200

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           +L+E+YV     +   V  D       +            K          PA  +  ++
Sbjct: 201 MLVEKYVLTPRHVEIQVFADRHGHCLYLNERDCSIQRRHQK-----VVEEAPAPGLTPEL 255

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            K +   A  A QAIG  G    +FL D    + F++E+N 
Sbjct: 256 RKAMGEAAVKAAQAIGYVGAGTVEFLLDAR-GEFFFMEMNT 295


>gi|307566892|gb|ADN52612.1| acetyl-CoA carboxylase BC subunit [Jatropha curcas]
          Length = 536

 Score = 82.9 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 81/220 (36%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
           +LH  +G   E+ +   +     I +      +  +  DK  +++ + + GVP  P    
Sbjct: 148 MLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRVMGDKSTARETMKNAGVPTVPGSDG 207

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS----IPLDLLQSSSWNHGDQ 165
            +      +   H I  P +IK   GG   G+ + K+       +     ++++    D 
Sbjct: 208 LLQNTEEAVKLAHEIGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDG 267

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+Y+ +   +   V+ D   +V               K             +  ++ 
Sbjct: 268 VYLEKYIQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLL----EEAPSPALTPELR 323

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K +   A  A  +IG  G+   +FL D      +++E+N 
Sbjct: 324 KAMGDAAVAAAASIGYIGVGTVEFLLDER-GSFYFMEMNT 362


>gi|330832726|ref|YP_004401551.1| carbamoyl phosphate synthase large subunit [Streptococcus suis ST3]
 gi|329306949|gb|AEB81365.1| carbamoyl phosphate synthase large subunit [Streptococcus suis ST3]
          Length = 1081

 Score = 82.9 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 32/232 (13%), Positives = 81/232 (34%), Gaps = 24/232 (10%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQHLISPPYV 129
           L    IP   + +     + D+   ++ +   G+P  P          +++   I  P +
Sbjct: 668 LAKAGIPILGTQVADLDRAEDRDLFEKALKDLGIPQPPGQTATNEEEALEAARKIGFPVL 727

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS--- 186
           ++P        + +++ ++ +   +  +   +    +L++ Y+ G E     + D     
Sbjct: 728 VRPSYVLGGRAMEIVENEEDLRSYMRTAVKASPEHPVLVDSYIVGRECEVDAISDGKDVL 787

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISR 245
           +      + ++  +S        +S  V P + +  ++   +          + C G+  
Sbjct: 788 IPGIMEHIERAGVHS-------GDSMAVYPPQTLSKEVQATIADYTKRLAIGLDCIGMMN 840

Query: 246 SDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEMAAYA----GYSFREL 288
             F+       V+ +E+N       P ++ V+  P          G S  EL
Sbjct: 841 IQFVI--KDETVYVIEVNPRASRTVPFLSKVTDIPMAQVATKLILGQSLAEL 890



 Score = 72.5 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 48/296 (16%), Positives = 106/296 (35%), Gaps = 34/296 (11%)

Query: 25  ALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNVLHGNFG 63
           AL++ G+ V  ++        D+ +                +L   +PD     L G  G
Sbjct: 58  ALKEEGYSVVLVNSNPATIMTDKEIADKVYIEPITLEFVTRILRKERPDALLPTLGGQTG 117

Query: 64  EDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFT 117
            +  ++     IL+ L +    + + A   + D+   KQ++     P+  S +V      
Sbjct: 118 LNMAMELSKAGILDELGVELLGTKLSAIDQAEDRDLFKQLMEDLNQPIPESTIVTTVDEA 177

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IE 176
           ++    I  P +++P       G  +   ++ +          +   Q LIE+ + G  E
Sbjct: 178 LEFAAEIGYPVIVRPAFTLGGTGGGMCANEEELREIAENGLKLSPVTQCLIERSIAGFKE 237

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +   VM DA+ +   + V   + +     ++  +        +     + ++  +    +
Sbjct: 238 IEYEVMRDAADNA--LVVCNMENFDPVGIHTGDSIVFAPTQTLSDIENQMLRDASLSIIR 295

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           A+   G        D  S K + +E+N  P ++  S     +   GY   +L   +
Sbjct: 296 ALKIEGGCNVQLALDSHSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAKI 347


>gi|26990768|ref|NP_746193.1| acetyl-CoA carboxylase, biotin carboxylase, putative [Pseudomonas
           putida KT2440]
 gi|24985768|gb|AAN69657.1|AE016600_7 acetyl-CoA carboxylase, biotin carboxylase, putative [Pseudomonas
           putida KT2440]
          Length = 650

 Score = 82.9 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 81/220 (36%), Gaps = 19/220 (8%)

Query: 58  LHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
           +H  +G   E+      +E   + +      A      K  +K ++ + GVP+ P     
Sbjct: 82  IHPGYGFLSENAGFARAIEQAGLIFLGPPASAIDAMGSKSAAKALMEAAGVPLVPGYHGE 141

Query: 115 RFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQL 166
              +D    +   I  P ++K   GG   G+ V++++  +   L  +           ++
Sbjct: 142 AQDLDTFRAAAERIGYPVLLKASAGGGGKGMKVVEEESQLADALASAQREAQSSFGDARM 201

Query: 167 LIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIY 224
           L+E+YV     +   V  D   +   +            K          PA  +  ++ 
Sbjct: 202 LVEKYVLKPRHVEIQVFADQHGNCLYLNERDCSIQRRHQK-----VVEEAPAPGLSPELR 256

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +   A  A QAIG  G    +FL D    + F++E+N 
Sbjct: 257 RAMGEAAVRAAQAIGYVGAGTVEFLLDAR-GEFFFMEMNT 295


>gi|23502066|ref|NP_698193.1| propionyl-CoA carboxylase subunit alpha [Brucella suis 1330]
 gi|225627658|ref|ZP_03785695.1| Biotin carboxylase domain protein [Brucella ceti str. Cudo]
 gi|254701929|ref|ZP_05163757.1| propionyl-CoA carboxylase, alpha subunit [Brucella suis bv. 5 str.
           513]
 gi|254704474|ref|ZP_05166302.1| propionyl-CoA carboxylase, alpha subunit [Brucella suis bv. 3 str.
           686]
 gi|254706631|ref|ZP_05168459.1| propionyl-CoA carboxylase, alpha subunit [Brucella pinnipedialis
           M163/99/10]
 gi|254710260|ref|ZP_05172071.1| propionyl-CoA carboxylase, alpha subunit [Brucella pinnipedialis
           B2/94]
 gi|256031754|ref|ZP_05445368.1| propionyl-CoA carboxylase, alpha subunit [Brucella pinnipedialis
           M292/94/1]
 gi|256061269|ref|ZP_05451419.1| propionyl-CoA carboxylase, alpha subunit [Brucella neotomae 5K33]
 gi|260168888|ref|ZP_05755699.1| propionyl-CoA carboxylase, alpha subunit [Brucella sp. F5/99]
 gi|260566281|ref|ZP_05836751.1| propionyl-COA carboxylase subunit alpha [Brucella suis bv. 4 str.
           40]
 gi|261314090|ref|ZP_05953287.1| carbamoyl-phosphate synthase subunit L ATP-binding protein
           [Brucella pinnipedialis M163/99/10]
 gi|261317822|ref|ZP_05957019.1| carbamoyl-phosphate synthase subunit L ATP-binding protein
           [Brucella pinnipedialis B2/94]
 gi|261325276|ref|ZP_05964473.1| carbamoyl-phosphate synthase subunit L [Brucella neotomae 5K33]
 gi|261752495|ref|ZP_05996204.1| carbamoyl-phosphate synthase subunit L ATP-binding protein
           [Brucella suis bv. 5 str. 513]
 gi|261755154|ref|ZP_05998863.1| carbamoyl-phosphate synthase subunit L ATP-binding protein
           [Brucella suis bv. 3 str. 686]
 gi|261758378|ref|ZP_06002087.1| propionyl-COA carboxylase subunit alpha [Brucella sp. F5/99]
 gi|265988852|ref|ZP_06101409.1| carbamoyl-phosphate synthase subunit L [Brucella pinnipedialis
           M292/94/1]
 gi|294852526|ref|ZP_06793199.1| propionyl-CoA carboxylase subunit alpha [Brucella sp. NVSL 07-0026]
 gi|23348023|gb|AAN30108.1| propionyl-CoA carboxylase, alpha subunit [Brucella suis 1330]
 gi|225617663|gb|EEH14708.1| Biotin carboxylase domain protein [Brucella ceti str. Cudo]
 gi|260155799|gb|EEW90879.1| propionyl-COA carboxylase subunit alpha [Brucella suis bv. 4 str.
           40]
 gi|261297045|gb|EEY00542.1| carbamoyl-phosphate synthase subunit L ATP-binding protein
           [Brucella pinnipedialis B2/94]
 gi|261301256|gb|EEY04753.1| carbamoyl-phosphate synthase subunit L [Brucella neotomae 5K33]
 gi|261303116|gb|EEY06613.1| carbamoyl-phosphate synthase subunit L ATP-binding protein
           [Brucella pinnipedialis M163/99/10]
 gi|261738362|gb|EEY26358.1| propionyl-COA carboxylase subunit alpha [Brucella sp. F5/99]
 gi|261742248|gb|EEY30174.1| carbamoyl-phosphate synthase subunit L ATP-binding protein
           [Brucella suis bv. 5 str. 513]
 gi|261744907|gb|EEY32833.1| carbamoyl-phosphate synthase subunit L ATP-binding protein
           [Brucella suis bv. 3 str. 686]
 gi|264661049|gb|EEZ31310.1| carbamoyl-phosphate synthase subunit L [Brucella pinnipedialis
           M292/94/1]
 gi|294821115|gb|EFG38114.1| propionyl-CoA carboxylase subunit alpha [Brucella sp. NVSL 07-0026]
          Length = 667

 Score = 82.9 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 45/240 (18%), Positives = 85/240 (35%), Gaps = 16/240 (6%)

Query: 34  SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDK 93
           S I +D+ +   +     D      +G   E+      L+   + +    + A     DK
Sbjct: 59  SYIVIDK-ILAAIKETGADAVHPG-YGFLSENPRFAEALKAANVTFIGPPVNAIDAMGDK 116

Query: 94  MRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQS 149
           + SK++ +  GV   P  +      D        I  P +IK   GG   G+ +   D+ 
Sbjct: 117 ITSKKLAAEAGVSTVPGHMGLIEDADEAVRIAGSIGYPVMIKASAGGGGKGMRIAWNDEE 176

Query: 150 ----IPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYEL 204
                 L   ++ S    D++ IE++V     +   V+GD   +V  +   +        
Sbjct: 177 AREGFQLSRNEAKSSFGDDRIFIEKFVTQPRHIEIQVLGDQHGNVVYLGERECSIQRRNQ 236

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K             +     K +   A    +A+G       +F+ D  +R  ++LE+N 
Sbjct: 237 K----VIEEAPSPFLDEATRKAMGEQAVALAKAVGYYSAGTVEFIVDG-NRNFYFLEMNT 291


>gi|331014345|gb|EGH94401.1| 3-methylcrotonyl-CoA carboxylase alpha subunit [Pseudomonas
           syringae pv. lachrymans str. M302278PT]
          Length = 649

 Score = 82.9 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 78/221 (35%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      +E   + +      A      K  +K ++   GVP+ P    
Sbjct: 81  AIHPGYGFLSENADFARAVEAAGLVFLGPPASAIDAMGSKSAAKSLMEQAGVPLVPGYHG 140

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
               +D    +   I  P ++K   GG   G+ V+++   +   L  +           +
Sbjct: 141 AAQDIDTFHAAAERIGYPVLLKATAGGGGKGMKVVEQASEMAEALASAQREALSSFGDAR 200

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           +L+E+YV     +   V  D       +            K          PA  +  ++
Sbjct: 201 MLVEKYVLSPRHVEIQVFADQQGHCLYLNERDCSIQRRHQK-----VVEEAPAPGLTPEL 255

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            K +   A  A QAIG  G    +FL D    + F++E+N 
Sbjct: 256 RKAMGEAAVKAAQAIGYVGAGTVEFLLDAR-GEFFFMEMNT 295


>gi|256369613|ref|YP_003107123.1| propionyl-CoA carboxylase, alpha subunit [Brucella microti CCM
           4915]
 gi|255999775|gb|ACU48174.1| propionyl-CoA carboxylase, alpha subunit [Brucella microti CCM
           4915]
          Length = 667

 Score = 82.9 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 45/240 (18%), Positives = 85/240 (35%), Gaps = 16/240 (6%)

Query: 34  SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDK 93
           S I +D+ +   +     D      +G   E+      L+   + +    + A     DK
Sbjct: 59  SYIVIDK-ILAAIKETGADAVHPG-YGFLSENPRFAEALKAANVTFIGPPVNAIDAMGDK 116

Query: 94  MRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQS 149
           + SK++ +  GV   P  +      D        I  P +IK   GG   G+ +   D+ 
Sbjct: 117 ITSKKLAAEAGVSTVPGHMGLIEDADEAVRIAGSIGYPVMIKASAGGGGKGMRIAWNDEE 176

Query: 150 ----IPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYEL 204
                 L   ++ S    D++ IE++V     +   V+GD   +V  +   +        
Sbjct: 177 AREGFQLSRNEAKSSFGDDRIFIEKFVTQPRHIEIQVLGDQHGNVVYLGERECSIQRRNQ 236

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K             +     K +   A    +A+G       +F+ D  +R  ++LE+N 
Sbjct: 237 K----VIEEAPSPFLDEATRKAMGEQAVALAKAVGYYSAGTVEFIVDG-NRNFYFLEMNT 291


>gi|126657223|ref|ZP_01728389.1| acetyl-CoA carboxylase [Cyanothece sp. CCY0110]
 gi|126621494|gb|EAZ92205.1| acetyl-CoA carboxylase [Cyanothece sp. CCY0110]
          Length = 450

 Score = 82.9 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 34/221 (15%), Positives = 79/221 (35%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     I    +I +      A     DK  +K+ +   GVP  P    
Sbjct: 78  AIHPGYGFLAENARFAEICADHQIVFIGPSPEAIRAMGDKSTAKKTMQKAGVPTVPGSAG 137

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI-----PLDLLQSSSWNHGD 164
            +      ++    I  P +IK   GG   G+ +++++               +++ +  
Sbjct: 138 LLDTEEEALNVARDIGYPVMIKATAGGGGRGMRLVREESEFSRLFQAAQGEAEAAFGNAG 197

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            + +E++++    +   ++ D+  +V  +            K             +   +
Sbjct: 198 -VYLEKFIERPRHIEFQILADSYGNVIHLGERDCSIQRRHQKLL----EEAPSPVLTPQL 252

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            K++   A  A ++I   G    +FL D      +++E+N 
Sbjct: 253 RKKMGEAAVKAAKSINYVGAGTVEFLVDNQGN-FYFMEMNT 292


>gi|73538708|ref|YP_299075.1| allophanate hydrolase subunit 2 [Ralstonia eutropha JMP134]
 gi|72122045|gb|AAZ64231.1| Allophanate hydrolase subunit 2 [Ralstonia eutropha JMP134]
          Length = 1233

 Score = 82.9 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 30/220 (13%), Positives = 69/220 (31%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       E   + +             K  ++ +     VP+ P   +
Sbjct: 93  AIHPGYGFLSENPGFAQDCEAAGVAFIGPTPDQMRAFGLKHTARALAEQHDVPLLPGSGL 152

Query: 114 NR---FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQL 166
                        I  P ++K   GG  +G+ +++ +  +                   L
Sbjct: 153 LDGLDHARTEAARIGYPVMLKSSAGGGGIGMRLVRSEAELVPAFEAVERLARANFKDAGL 212

Query: 167 LIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIY 224
            +E++V+    +   + GD   +V  +            +  +       PA  +     
Sbjct: 213 FLEKFVERARHIEVQLFGDGHGNVVALGE-----RDCSAQRRNQKVIEETPAPGLDTTTR 267

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +   A    +A+  R     +F+ D  +   ++LE+N 
Sbjct: 268 DALMAAAVRLGRAVSYRSAGTVEFVLDADTGAFYFLEVNT 307


>gi|320582982|gb|EFW97199.1| urea amidolyase, putative [Pichia angusta DL-1]
          Length = 1248

 Score = 82.9 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 36/238 (15%), Positives = 79/238 (33%), Gaps = 20/238 (8%)

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
            +  +      D+     +G   E+    A L    I +      +      K  ++++ 
Sbjct: 69  EIIELATKHNIDVVIPG-YGFLSENSEFAAELAKNGILFAGPSSESVEQFGLKHLAREIA 127

Query: 101 SSCGVPVCPSILVNRFTMD---SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
               VPV P   +   + +     + I  P ++K   GG  +G+ V   +  +  +  + 
Sbjct: 128 IKADVPVVPGTSLISDSEELISECNKIGYPVILKATAGGGGMGLKVCYNEGELVANFAEV 187

Query: 158 SSWNH----GDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212
           +S          + +E+Y++ G  +   + G+   DV      +        K       
Sbjct: 188 TSRGTSLFSNAGVFVEKYIEKGRHIEVQMFGNGLGDVVTYGERECSIQRRHQK-----VI 242

Query: 213 HVLPAKIPLDI------YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              P+    D+       + +   A      I  +     +FL D  +   ++LE+N 
Sbjct: 243 EECPSPFVSDLGSKHNLRERLTSAAKRLASTIKYKSAGTVEFLVDDTTGDFYFLEVNT 300


>gi|262372702|ref|ZP_06065981.1| acetyl-CoA carboxylase, biotin carboxylase [Acinetobacter junii
           SH205]
 gi|262312727|gb|EEY93812.1| acetyl-CoA carboxylase, biotin carboxylase [Acinetobacter junii
           SH205]
          Length = 454

 Score = 82.9 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 78/220 (35%), Gaps = 19/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     I+E     +         L  +K+ +   +   GVP  P    
Sbjct: 77  AIHPGYGFLSENAEFAEIVENSGFIFIGPRPEHIRLMGNKVSAIIAMKKAGVPTVPGCDH 136

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD----QSIPLDLLQSSSWNHGDQL 166
            +     +     I  P ++K   GG   G+ ++++     +S+      +  W   D +
Sbjct: 137 AVTIHNALAEAREIGFPLIVKAAAGGGGRGMRIVERVDTLLESVQAAQRDAEMWFGDDTV 196

Query: 167 LIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIY 224
            +E+++     +   V+GD +     +           L+          PA  +P    
Sbjct: 197 YMERFLQKPRHVEVQVLGDGNGHAIHLY-----DRDCSLQRRHQKVLEEAPAPNLPEQAR 251

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            ++      A + +  RG    +FLF     + F++E+N 
Sbjct: 252 ADILEACVNACKLMQYRGAGTFEFLF--EDGEFFFIEMNT 289


>gi|86137698|ref|ZP_01056274.1| pyruvate carboxylase [Roseobacter sp. MED193]
 gi|85825290|gb|EAQ45489.1| pyruvate carboxylase [Roseobacter sp. MED193]
          Length = 1149

 Score = 82.9 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 34/221 (15%), Positives = 73/221 (33%), Gaps = 18/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+           I +            DK  +++V    GVPV P+  V
Sbjct: 80  AIHPGYGLLSENPDFVDACARNGITFIGPKAETMRALGDKASARRVAIEAGVPVIPATEV 139

Query: 114 ----NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ----SSSWNHGDQ 165
                +        +  P ++K   GG   G+  I     +   +L+    + +     +
Sbjct: 140 LGDDMKAIAKEASEVGYPLMLKASWGGGGRGMRPIHGPDELEEKVLEGRREAEAAFGNGE 199

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
             +E+ +     +   ++GD   ++              ++  +       PA  +  + 
Sbjct: 200 GYLEKMITRARHVEVQILGDKHGEIY-----HLFERDCSVQRRNQKVVERAPAPYLSEEQ 254

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             E+  L       +        +FL D  S K +++E+N 
Sbjct: 255 RAEICELGRKICAHVNYECAGTVEFLMDMESGKFYFIEVNP 295


>gi|326387934|ref|ZP_08209540.1| biotin carboxylase / acetyl-coenzyme A carboxylase carboxyl
           transferase subunit alpha [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326207980|gb|EGD58791.1| biotin carboxylase / acetyl-coenzyme A carboxylase carboxyl
           transferase subunit alpha [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 461

 Score = 82.9 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 73/220 (33%), Gaps = 18/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     I+E   I +            DK+ +K+     G+P+ P    
Sbjct: 88  AIHPGYGFLSENAKFAEIVEAHGITWIGPKPEHIRTMGDKVEAKRTAGKLGLPLVPGSDG 147

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSWNHGDQ 165
            I            I  P +IK   GG   G+ V      +         ++ +      
Sbjct: 148 AIEDPEVAARIAEEIGYPVIIKAASGGGGRGMKVCNGPDELERLMQQAGNEAKAAFGDAT 207

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+Y+ +   +   + GD +     +            K             I  +  
Sbjct: 208 VYLEKYLGNPRHIEFQIFGDGNGKAIHLGERDCSLQRRHQKVL----EEAPSPVISSEER 263

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +  +   A   +G RG    +FL+   + + +++E+N 
Sbjct: 264 ERMGGIVSKAMADMGYRGAGTIEFLW--ENGEFYFIEMNT 301


>gi|190572313|ref|YP_001970158.1| putative biotin carboxylase [Stenotrophomonas maltophilia K279a]
 gi|190010235|emb|CAQ43843.1| putative biotin carboxylase [Stenotrophomonas maltophilia K279a]
          Length = 671

 Score = 82.9 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 42/222 (18%), Positives = 83/222 (37%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+           I +      A     DK  +K +++  GVP+ P    
Sbjct: 88  AIHPGYGFLSENADFADACAAAGITFIGPPASAIRAMGDKSAAKALMAKAGVPLPPGYHG 147

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL-----QSSSWNHGD 164
           ++   D        I  P +IK   GG   G+  +++ +     L       +S++   D
Sbjct: 148 DQQAPDFLRTQADAIGYPVLIKASAGGGGKGMRKVERSEDFVDALASCQREAASAFG-ND 206

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            +L+E+YV+    +   V GD+  D   +           ++          PA  +  +
Sbjct: 207 HVLVEKYVERPRHIEIQVFGDSHGDAVYL-----FERDCSVQRRHQKVLEEAPAPGMSAE 261

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
               + + A  A +A+G  G    +F+  P     +++E+N 
Sbjct: 262 RRAAMGKAAVDAARAVGYEGAGTVEFIAGP-DGDFYFMEMNT 302


>gi|2224775|emb|CAB09721.1| pyruvate carboxylase [Bacillus subtilis subsp. subtilis str. 168]
          Length = 384

 Score = 82.9 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 34/243 (13%), Positives = 88/243 (36%), Gaps = 21/243 (8%)

Query: 35  QIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSM 91
            ID    +  ++   K +   + +H  +G   E+       E   I +         +  
Sbjct: 61  PIDAYLDIEGIIDIAKRNKV-DAIHPGYGFLSENIHFARRCEEEGIVFIGPKSEHLDMFG 119

Query: 92  DKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI----SPPYVIKPLKGGSSLGIIVIKKD 147
           DK+++++     G+PV P       T+++          P +IK   GG   G+ +++ +
Sbjct: 120 DKVKAREQAEKAGIPVIPGSDGPAETLEAVEQFGQANGYPIIIKASLGGGGRGMRIVRSE 179

Query: 148 QSIPLDLL----QSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSY 202
             +         ++ +    D++ +E+ ++    +   V+GD   +V             
Sbjct: 180 SEVKEAYERAKSEAKAAFGNDEVYVEKLIENPKHIEVQVIGDKQGNVV-----HLFERDC 234

Query: 203 ELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
            ++        V P   +  ++  ++   A    + +        +FL    + + +++E
Sbjct: 235 SVQRRHQKVIEVAPSVSLSPELRDQICEAAVALAKNVNYINAGTVEFLV--ANNEFYFIE 292

Query: 262 INV 264
           +N 
Sbjct: 293 VNP 295


>gi|148547011|ref|YP_001267113.1| carbamoyl-phosphate synthase L chain, ATP-binding [Pseudomonas
           putida F1]
 gi|148511069|gb|ABQ77929.1| 3-methylcrotonoyl-CoA carboxylase, alpha subunit [Pseudomonas
           putida F1]
          Length = 650

 Score = 82.9 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 81/220 (36%), Gaps = 19/220 (8%)

Query: 58  LHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
           +H  +G   E+      +E   + +      A      K  +K ++ + GVP+ P     
Sbjct: 82  IHPGYGFLSENAGFARAIEQAGLIFLGPPASAIDAMGSKSAAKALMEAAGVPLVPGYHGE 141

Query: 115 RFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQL 166
              +D    +   I  P ++K   GG   G+ V++++  +   L  +           ++
Sbjct: 142 AQDLDTFRAAAERIGYPVLLKASAGGGGKGMKVVEEESQLADALASAQREAQSSFGDARM 201

Query: 167 LIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIY 224
           L+E+YV     +   V  D   +   +            K          PA  +  ++ 
Sbjct: 202 LVEKYVLKPRHVEIQVFADQHGNCLYLNERDCSIQRRHQK-----VVEEAPAPGLSPELR 256

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +   A  A QAIG  G    +FL D    + F++E+N 
Sbjct: 257 RAMGEAAVRAAQAIGYVGAGTVEFLLDAR-GEFFFMEMNT 295


>gi|306835392|ref|ZP_07468412.1| pyruvate carboxylase [Corynebacterium accolens ATCC 49726]
 gi|304568720|gb|EFM44265.1| pyruvate carboxylase [Corynebacterium accolens ATCC 49726]
          Length = 1159

 Score = 82.9 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 36/240 (15%), Positives = 78/240 (32%), Gaps = 19/240 (7%)

Query: 35  QIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKM 94
            +D+   +       + D  +   +G   E   +    E   I +         L+ DK 
Sbjct: 84  YLDI-EEIIRAAKKSEADAIYPG-YGFLSERADLARACEDNGIKFIGPTPSTLDLTGDKS 141

Query: 95  RSKQVVSSCGVPVC----PSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150
            +       G+P      P+  +++   D+    S P  +K + GG   G+  ++ +  +
Sbjct: 142 AAVNAAKEAGLPTLQDSQPTTDIDKLVADAGD-FSFPVFVKAVSGGGGRGMRYVESESEL 200

Query: 151 -----PLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205
                       +++  G   L    ++   +   V+ D+  +V              ++
Sbjct: 201 RERAAEASREAEAAFGDGSVYLETAVINPQHIEVQVLADSQGNVI-----HLFERDCSVQ 255

Query: 206 YSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
                   + PA  +   +   + + A    + I   G    +FL D     VF  E+N 
Sbjct: 256 RRHQKVVEIAPAPSLDSQLRDRICQDAVNFCEHINYEGAGTVEFLVDERGNHVFI-EMNP 314


>gi|213967038|ref|ZP_03395188.1| biotin carboxylase/biotin-containing subunit [Pseudomonas syringae
           pv. tomato T1]
 gi|301385223|ref|ZP_07233641.1| biotin carboxylase/biotin-containing subunit [Pseudomonas syringae
           pv. tomato Max13]
 gi|302063280|ref|ZP_07254821.1| biotin carboxylase/biotin-containing subunit [Pseudomonas syringae
           pv. tomato K40]
 gi|302130164|ref|ZP_07256154.1| biotin carboxylase/biotin-containing subunit [Pseudomonas syringae
           pv. tomato NCPPB 1108]
 gi|213928360|gb|EEB61905.1| biotin carboxylase/biotin-containing subunit [Pseudomonas syringae
           pv. tomato T1]
          Length = 649

 Score = 82.9 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 78/221 (35%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      +E   + +      A      K  +K ++   GVP+ P    
Sbjct: 81  AIHPGYGFLSENADFARAVEAAGLVFLGPPASAIDAMGSKSAAKSLMEQAGVPLVPGYHG 140

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
               +D    +   I  P ++K   GG   G+ V+++   +   L  +           +
Sbjct: 141 AAQDIDTFHAAAERIGYPVLLKATAGGGGKGMKVVEQASEMAEALASAQREALSSFGDAR 200

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           +L+E+YV     +   V  D       +            K          PA  +  ++
Sbjct: 201 MLVEKYVLSPRHVEIQVFADQQGHCLYLNERDCSIQRRHQK-----VVEEAPAPGLTPEL 255

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            K +   A  A QAIG  G    +FL D    + F++E+N 
Sbjct: 256 RKAMGEAAVKAAQAIGYVGAGTVEFLLDAR-GEFFFMEMNT 295


>gi|223934161|ref|ZP_03626102.1| carbamoyl-phosphate synthase, large subunit [Streptococcus suis
           89/1591]
 gi|302023698|ref|ZP_07248909.1| carbamoyl phosphate synthase large subunit [Streptococcus suis
           05HAS68]
 gi|223897167|gb|EEF63587.1| carbamoyl-phosphate synthase, large subunit [Streptococcus suis
           89/1591]
          Length = 1059

 Score = 82.9 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 32/232 (13%), Positives = 81/232 (34%), Gaps = 24/232 (10%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQHLISPPYV 129
           L    IP   + +     + D+   ++ +   G+P  P          +++   I  P +
Sbjct: 646 LAKAGIPILGTQVADLDRAEDRDLFEKALKDLGIPQPPGQTATNEEEALEAARKIGFPVL 705

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS--- 186
           ++P        + +++ ++ +   +  +   +    +L++ Y+ G E     + D     
Sbjct: 706 VRPSYVLGGRAMEIVENEEDLRSYMRTAVKASPEHPVLVDSYIVGRECEVDAISDGKDVL 765

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISR 245
           +      + ++  +S        +S  V P + +  ++   +          + C G+  
Sbjct: 766 IPGIMEHIERAGVHS-------GDSMAVYPPQTLSKEVQATIADYTKRLAIGLDCIGMMN 818

Query: 246 SDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEMAAYA----GYSFREL 288
             F+       V+ +E+N       P ++ V+  P          G S  EL
Sbjct: 819 IQFVI--KDETVYVIEVNPRASRTVPFLSKVTDIPMAQVATKLILGQSLAEL 868



 Score = 72.5 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 48/296 (16%), Positives = 106/296 (35%), Gaps = 34/296 (11%)

Query: 25  ALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNVLHGNFG 63
           AL++ G+ V  ++        D+ +                +L   +PD     L G  G
Sbjct: 36  ALKEEGYSVVLVNSNPATIMTDKEIADKVYIEPITLEFVTRILRKERPDALLPTLGGQTG 95

Query: 64  EDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFT 117
            +  ++     IL+ L +    + + A   + D+   KQ++     P+  S +V      
Sbjct: 96  LNMAMELSKAGILDELGVELLGTKLSAIDQAEDRDLFKQLMEDLNQPIPESTIVTTVDEA 155

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IE 176
           ++    I  P +++P       G  +   ++ +          +   Q LIE+ + G  E
Sbjct: 156 LEFAAEIGYPVIVRPAFTLGGTGGGMCANEEELREIAENGLKLSPVTQCLIERSIAGFKE 215

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +   VM DA+ +   + V   + +     ++  +        +     + ++  +    +
Sbjct: 216 IEYEVMRDAADNA--LVVCNMENFDPVGIHTGDSIVFAPTQTLSDIENQMLRDASLSIIR 273

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           A+   G        D  S K + +E+N  P ++  S     +   GY   +L   +
Sbjct: 274 ALKIEGGCNVQLALDSHSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAKI 325


>gi|270159117|ref|ZP_06187773.1| acetyl-CoA carboxylase [Legionella longbeachae D-4968]
 gi|289166048|ref|YP_003456186.1| Biotin carboxylase (A subunit of acetyl-CoA carboxylase)
           [Legionella longbeachae NSW150]
 gi|269987456|gb|EEZ93711.1| acetyl-CoA carboxylase [Legionella longbeachae D-4968]
 gi|288859221|emb|CBJ13155.1| Biotin carboxylase (A subunit of acetyl-CoA carboxylase)
           [Legionella longbeachae NSW150]
          Length = 446

 Score = 82.9 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 45/293 (15%), Positives = 97/293 (33%), Gaps = 54/293 (18%)

Query: 13  EVSLSSGKACASALEDAGFKVSQI--DVDRSVGLVL------------------------ 46
           E++L        A ++ G +   +  DVD+ +  V                         
Sbjct: 12  EIALR----ILRACKELGIQTVAVHSDVDKDLLHVRLADETVCIGPAPAQKSYLNIPAII 67

Query: 47  -AHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS 102
            A    D     +H  +G   E+     I+E     +         L  DK+ +   + +
Sbjct: 68  SAAEITDAV--AIHPGYGFLSENADFADIVEKSGFHFIGPRGETIRLMGDKVSAINAMRA 125

Query: 103 CGVPVCPS-----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL-- 155
            GVP  P         +   ++    +  P +IK   GG   G+ V+  +  +   +   
Sbjct: 126 AGVPCVPGSDGPLTDDDHKNLEIGRKVGYPVIIKAAGGGGGRGMRVVHSESHLLNAIALT 185

Query: 156 --QSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212
             ++ +  +   + +E++++    +   V+GD   +   +            K       
Sbjct: 186 RSEAKAAFNNPVVYMEKFLENPRHVEFQVLGDGKGNAIHLGERDCSMQRRHQK-----VV 240

Query: 213 HVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              PA  I  ++  ++      A Q +  RG    +FL+       +++E+N 
Sbjct: 241 EEAPAPGISPELRDKIGASVVKACQDLKYRGAGTFEFLY--QDGCFYFIEMNT 291


>gi|169335857|ref|ZP_02863050.1| hypothetical protein ANASTE_02283 [Anaerofustis stercorihominis DSM
           17244]
 gi|169258595|gb|EDS72561.1| hypothetical protein ANASTE_02283 [Anaerofustis stercorihominis DSM
           17244]
          Length = 1141

 Score = 82.9 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 36/219 (16%), Positives = 78/219 (35%), Gaps = 17/219 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+ +  A  E   I +         L  +K+ +K+     GV V   + V
Sbjct: 80  AIHPGYGFLSENPIFAAECEKAGIKFIGPSSDVIELLGNKVNAKEAAIEAGVSVLDGVKV 139

Query: 114 NRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGDQLL 167
                  +    I  P +IK   GG   G+ V +++  +       + ++    +  ++ 
Sbjct: 140 ETVEEAKEISSKIGYPVIIKASAGGGGRGMRVCEREDDLRNQFESAVREAKKAFNNGEVF 199

Query: 168 IEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYK 225
           IE+YV     +   ++ D    +  +            K          P++ I  +  K
Sbjct: 200 IEKYVRAPRHVEAQILADEYGHIVHLFERDCSIQRRHQK-----IIEFSPSQSISEETRK 254

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +   +    + +G       +FL D   +  +++E+N 
Sbjct: 255 AICEESVNLAKHVGYTNAGTVEFLVDENEKH-YFMEVNP 292


>gi|209552354|ref|YP_002284269.1| urea carboxylase [Rhizobium leguminosarum bv. trifolii WSM2304]
 gi|209539466|gb|ACI59398.1| urea carboxylase [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 1179

 Score = 82.9 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 39/256 (15%), Positives = 91/256 (35%), Gaps = 30/256 (11%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      L +  I +        +    K  ++Q+  + GVP+ P   +
Sbjct: 77  AVHPGYGFLSENIGFAERLAVEGIAFIGPRPQHLSAFGLKHTARQLAKASGVPLLPGTDL 136

Query: 114 NRFTMDS---QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQL 166
            +   ++      +  P ++K   GG  +G+ +      +          + +     ++
Sbjct: 137 LQSVEEALSAAETVGYPVMLKSTAGGGGIGMQLCANAAGLTASFESVQRTARASFGDARV 196

Query: 167 LIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIY 224
            IE++V     +   + GD    V  +           L+  +       PA  +  +  
Sbjct: 197 YIERFVAQARHVEVQIFGDGKGRVIALGE-----RDCSLQRRNQKVVEETPAPGLSAETR 251

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI---FPEMAAYA 281
             + + A     ++        +F++DP   + ++LE+N +       +    P   A  
Sbjct: 252 ARLHKAAVDLGSSVSYESAGTVEFIYDPQREEFYFLEVNTR-------LQVEHPVTEAVF 304

Query: 282 GYSFRELLLWMVEDAS 297
           G    +L+ WM+  A+
Sbjct: 305 GI---DLVEWMIRQAA 317


>gi|2231975|gb|AAB62169.1| vancomycin resistance protein C2 [Enterococcus casseliflavus]
          Length = 117

 Score = 82.9 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 32/117 (27%), Positives = 57/117 (48%), Gaps = 8/117 (6%)

Query: 82  SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIKPLKG 135
            G+ ASAL M+K    Q  ++ GV   P+IL+       + +         P   KP + 
Sbjct: 1   CGVAASALCMNKWLLHQAAAAIGVQSAPTILLINQANQQEQIEAFIQTHGFPVFFKPNEA 60

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192
           GSS GI  +   + I   L +  ++ +   +L+++ + G+E+ CG++G+ SL V   
Sbjct: 61  GSSKGITKVTCVEEIASALKE--AFTYCSAVLLQKNIAGVEIGCGILGNDSLTVGAC 115


>gi|293608455|ref|ZP_06690758.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292829028|gb|EFF87390.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 663

 Score = 82.9 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 79/221 (35%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       +   I +    + A      K  SK ++   GVP+ P    
Sbjct: 77  AVHPGYGFLSENDQFALACQQHNICFIGPPVDAILAMGLKATSKALMEKAGVPLTPGYHG 136

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
                D        I  P +IK   GG   G+ ++++ +     L     ++ S    D 
Sbjct: 137 TNQDADFLKQQADRIGYPVLIKASAGGGGKGMSLVERSEDFLHALASCKREAKSSFGNDD 196

Query: 166 LLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDI 223
           +LIE+Y +    +   V GD   +               ++          PA ++P + 
Sbjct: 197 VLIERYVIQPRHIEVQVFGDTHGNYV-----HLFERDCSVQRRHQKVLEEAPAPQMPSEK 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              +++ A  A +A+   G    +F+        +++E+N 
Sbjct: 252 LDAMRQAAIDAARAVNYVGAGTVEFIV-EQDGTAYFMEMNT 291


>gi|258424032|ref|ZP_05686914.1| acetyl-CoA biotin carboxylase [Staphylococcus aureus A9635]
 gi|257845653|gb|EEV69685.1| acetyl-CoA biotin carboxylase [Staphylococcus aureus A9635]
          Length = 453

 Score = 82.9 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 79/220 (35%), Gaps = 18/220 (8%)

Query: 56  NVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
           N +H  +G   E      I+E   I +         +  DK+ ++Q V   GVPV P   
Sbjct: 75  NAIHPGYGFLSESTKFAQIVEEQGIAFIGPTKKTMEMMGDKITARQTVHHAGVPVIPGSN 134

Query: 111 --ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS----WNHGD 164
             +            I  P VIK   GG   GI ++KK + +     ++ S    +   D
Sbjct: 135 DAVNHVSEIEKLAKDIGYPVVIKAASGGGGKGIRIVKKAEDLEKAFKEAKSEGKKYFDDD 194

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           ++ +E ++     +   VMGD   +   +            + +         A +  + 
Sbjct: 195 RVYVEAFIPVAKHVEVQVMGDGQDNYVHLGERDCSV----QRKNQKLIEESPCAALTEER 250

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            +++   A    +A   R     +FL        +++E+N
Sbjct: 251 RQQICNDAVKVARAANYRSAGTIEFLVT--DNAHYFIEMN 288


>gi|221638497|ref|YP_002524759.1| pyruvate carboxylase [Rhodobacter sphaeroides KD131]
 gi|221159278|gb|ACM00258.1| Pyruvate carboxylase [Rhodobacter sphaeroides KD131]
          Length = 1160

 Score = 82.9 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 74/221 (33%), Gaps = 18/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       +   I +            DK  +++V  + GVPV P+  V
Sbjct: 86  AIHPGYGLLSENPDFVEACDAAGIAFIGPKAETMRALGDKASARRVAMAAGVPVIPATEV 145

Query: 114 NRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGDQ 165
               M+        I  P ++K   GG   G+  I  +  +   +     ++ +     +
Sbjct: 146 LGDDMEEIKRQAAEIGYPLMLKASWGGGGRGMRPITSEAELADKVREGRREAEAAFGNGE 205

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
             +E+ +     +   ++GD    +  +            K          PA  +  + 
Sbjct: 206 GYLEKMIQRARHVEVQILGDKFGAIYHLYERDCTVQRRNQK-----VVERAPAPYLTEEQ 260

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             E+  L       +        +FL D  S K +++E+N 
Sbjct: 261 RAEICELGRRICAHVNYECAGTVEFLMDMDSEKFYFIEVNP 301


>gi|320328979|gb|EFW84978.1| carbamoyl-phosphate synthase subunit L [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 649

 Score = 82.5 bits (203), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 78/221 (35%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      +E   + +      A      K  +K ++   GVP+ P    
Sbjct: 81  AIHPGYGFLSENADFARTIEEAGLIFLGPPASAIDAMGSKSAAKSLMDQAGVPLVPGYHG 140

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
           +   ++    +   I  P ++K   GG   G+ V++    +   L  +           +
Sbjct: 141 DAQDIETFRSAAERIGYPVLLKATAGGGGKGMKVVEHSGELAEALASAQREALSSFGDAR 200

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           +L+E+YV     +   V  D       +            K          PA  +  ++
Sbjct: 201 MLVEKYVLTPRHVEIQVFADRHGHCLYLNERDCSIQRRHQK-----VVEEAPAPGLTPEL 255

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            K +   A  A QAIG  G    +FL D    + F++E+N 
Sbjct: 256 RKAMGEAAVKAAQAIGYMGAGTVEFLLDAR-GEFFFMEMNT 295


>gi|320324606|gb|EFW80683.1| carbamoyl-phosphate synthase subunit L [Pseudomonas syringae pv.
           glycinea str. B076]
          Length = 649

 Score = 82.5 bits (203), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 78/221 (35%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      +E   + +      A      K  +K ++   GVP+ P    
Sbjct: 81  AIHPGYGFLSENADFARTIEEAGLIFLGPPASAIDAMGSKSAAKSLMDQAGVPLVPGYHG 140

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
           +   ++    +   I  P ++K   GG   G+ V++    +   L  +           +
Sbjct: 141 DAQDIETFRSAAERIGYPVLLKATAGGGGKGMKVVEHSGELAEALASAQREALSSFGDAR 200

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           +L+E+YV     +   V  D       +            K          PA  +  ++
Sbjct: 201 MLVEKYVLTPRHVEIQVFADRHGHCLYLNERDCSIQRRHQK-----VVEEAPAPGLTPEL 255

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            K +   A  A QAIG  G    +FL D    + F++E+N 
Sbjct: 256 RKAMGEAAVKAAQAIGYMGAGTVEFLLDAR-GEFFFMEMNT 295


>gi|307706074|ref|ZP_07642893.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus mitis
           SK321]
 gi|307618474|gb|EFN97622.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus mitis
           SK321]
          Length = 455

 Score = 82.5 bits (203), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 41/220 (18%), Positives = 78/220 (35%), Gaps = 16/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  FG   E+     + E + I +         +  DK+ ++  +   GVPV P    
Sbjct: 77  AIHPGFGFLSENSKFATMCEEVGIKFIGPSGHVMDMMGDKINARAQMIKAGVPVIPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
            +  +   +     I  P ++K   GG   GI  ++K + +      +SS          
Sbjct: 137 EVHNSEEALIVAEKIGYPVMLKASAGGGGKGIRKVEKPEDLVSAFETASSEAKANYGNGA 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+ +     +   ++GD    V  +            K             I   + 
Sbjct: 197 MYIERVIYPARHIEVQILGDEHGHVIHLGERDCSLQRNNQKVL----EESPSIAIGKTLR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            E+   A  A +++G       +FL D  S K +++E+N 
Sbjct: 253 NEIGSAAVRAAESVGYENAGTIEFLLDEASGKFYFMEMNT 292


>gi|163751164|ref|ZP_02158393.1| acetyl-CoA carboxylase [Shewanella benthica KT99]
 gi|161328993|gb|EDQ00066.1| acetyl-CoA carboxylase [Shewanella benthica KT99]
          Length = 453

 Score = 82.5 bits (203), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 81/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+      +E     +         L  DK+ +   + + GVP  P    
Sbjct: 84  AIHPGYGFLSENADFAEQVEACGFSFIGPTAAVIRLMGDKVSAISAMKAAGVPTVPGSDG 143

Query: 111 ILVNRFTMDS--QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
           +L N   ++    + I  P +IK   GG   G+ V+  +  +   +     ++ +     
Sbjct: 144 MLSNDSVLNKRIANKIGYPVIIKATAGGGGRGMRVVHDEAELIPAIGLTQAEAKAAFANG 203

Query: 165 QLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLD 222
            + +E+Y+     +   V+ D   +   +            K          PA  I  D
Sbjct: 204 DVYMEKYLQTPRHIEIQVLSDGQGNAIHLGERDCSMQRRHQK-----VIEEAPALGIDSD 258

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +E+  L   A   IG RG    +FL++    + +++E+N 
Sbjct: 259 TRREIGALCAKACVDIGYRGAGTFEFLYEA--GQFYFIEMNT 298


>gi|153941029|ref|YP_001392951.1| biotin carboxylase [Clostridium botulinum F str. Langeland]
 gi|152936925|gb|ABS42423.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Clostridium
           botulinum F str. Langeland]
          Length = 448

 Score = 82.5 bits (203), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 81/220 (36%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  FG   E+     + +   I +            +K  ++ ++   GVPV P    
Sbjct: 77  AIHPGFGFLSENSKFANMCKDCNIVFIGPDSETIDKVGNKSNARDIMIRAGVPVIPGSNG 136

Query: 111 ILVNRFT-MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
           ++ N    ++    I  P V+K   GG   GI ++   +++      + S        D 
Sbjct: 137 VIHNEEEALNIAEEIGYPVVVKASAGGGGRGIRIVHSKENMIKAFNTAKSEAKGAFGDDS 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+++     +   ++GD   ++  +            K            ++  ++ 
Sbjct: 197 MYVEKFIKNPRHIEFQILGDNYGNIIHLGERDCSLQRRNQKVL----EEAPSPRMNEELR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K +  +A  A +A+  +     +FL D      +++E+N 
Sbjct: 253 KRMGDVAIKAAKAVEYKNAGTIEFLLDE-DGNFYFMEMNT 291


>gi|330798847|ref|XP_003287461.1| methylcrotonyl-CoA carboxylase [Dictyostelium purpureum]
 gi|325082544|gb|EGC36023.1| methylcrotonyl-CoA carboxylase [Dictyostelium purpureum]
          Length = 689

 Score = 82.5 bits (203), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 82/221 (37%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+     + E   I +      A      K  SK ++   GVP  P    
Sbjct: 103 AIHPGYGFLSENSDFADLCEKEGIIFIGPPSDAIRAMGSKSASKDIMIKAGVPTIPGYHG 162

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGDQ 165
              +MD        I  P +IK + GG   G+ ++++++ +   +     ++ +     +
Sbjct: 163 EDQSMDILKKEALKIGYPVLIKAVMGGGGKGMRIVEREEDLEDGVNSSKREAQASFGDSR 222

Query: 166 LLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           +L+E+Y V    +   V  D   +               ++          PA  +  D+
Sbjct: 223 VLVEKYLVHPRHVEIQVFADKHGNCV-----HLFERDCSVQRRHQKIIEEAPAPHLSEDL 277

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +++   A  A +A+G  G    +F+        F++E+N 
Sbjct: 278 RQKMGSAAVAAAKAVGYVGAGTVEFILS-QDGSFFFMEMNT 317


>gi|320010673|gb|ADW05523.1| Carbamoyl-phosphate synthase L chain ATP-binding protein
           [Streptomyces flavogriseus ATCC 33331]
          Length = 682

 Score = 82.5 bits (203), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 85/221 (38%), Gaps = 17/221 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---- 109
            +H  +G   E+           + +      A +L  DK+R+K+ V++ GVPV P    
Sbjct: 77  AVHPGYGFLAENAGFARACAEAGLVFIGPPAPAISLMGDKIRAKETVAAAGVPVVPGSSG 136

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
           S L +     +   I  P ++KP  GG   G+ +++++  +  ++  +          D 
Sbjct: 137 SGLSDARLGAAAREIGMPVLLKPSAGGGGKGMRLVREEALLADEIAAARREARASFGDDT 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           LL+E+++D    +   V+ D   +V  +   +        K             +  +  
Sbjct: 197 LLVERWIDRPRHIEIQVLADGHGNVVHLGERECSLQRRHQKII----EEAPSVLLDEETR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLS-RKVFWLEINV 264
             +   A  A ++ G  G    +F+         +++E+N 
Sbjct: 253 AAMGEAAVQAARSCGYVGAGTVEFIVPGNDPSSYYFMEMNT 293


>gi|146307716|ref|YP_001188181.1| carbamoyl-phosphate synthase L chain, ATP-binding [Pseudomonas
           mendocina ymp]
 gi|145575917|gb|ABP85449.1| Carbamoyl-phosphate synthase L chain, ATP-binding protein
           [Pseudomonas mendocina ymp]
          Length = 661

 Score = 82.5 bits (203), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 73/220 (33%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       E   I +    + A  L   K  SK  +   GVP  P    
Sbjct: 79  AIHPGYGFLSENADFARACEAAGIVFIGPTVDAIHLMGSKRLSKIAMLEAGVPCIPGYEG 138

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS-----SWNHGD 164
                +        I  P +IK   GG   G+ ++++   +   +  +      ++  G+
Sbjct: 139 AAQDDETLASEAERIGYPLMIKASAGGGGRGMRLVQESSELLGQIRTARSEAQNAFGSGE 198

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
            +L    +    +   V GD   ++  +            K             +  ++ 
Sbjct: 199 LILERAVIRPRHVEIQVFGDQHGNILYLGERDCSVQRRHQK----VVEEAPCPVMTPELR 254

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +   A  A  ++   G    +FL D    + F+LE+N 
Sbjct: 255 RAMGEAAVKAAASVNYVGAGTVEFLLDAS-GEFFFLEMNT 293


>gi|114046894|ref|YP_737444.1| hypothetical protein Shewmr7_1388 [Shewanella sp. MR-7]
 gi|113888336|gb|ABI42387.1| protein of unknown function DUF201 [Shewanella sp. MR-7]
          Length = 395

 Score = 82.5 bits (203), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 35/225 (15%), Positives = 77/225 (34%), Gaps = 23/225 (10%)

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGS 137
           T      + +  +K +++  +   G+      +V  F     +   +  P +IK      
Sbjct: 90  TGVNYETAMICSNKDKTRLSLEKHGITQPKFFIVRSFEGAFSAAEKMGYPCIIKAPDSSG 149

Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKS 197
           S G+  +   + + L   ++  ++   ++L+EQ+++GIE+          +     +   
Sbjct: 150 SRGVTKVNDSKGVQLAYKEACDYSRSGEILVEQFIEGIEIGAQTF-SQEGECVYCLIHND 208

Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
                     + +S       I     KE    A  A   +   G +  D +  P    V
Sbjct: 209 TLCDNGFLVPNGHSYPFNQVSIDDLAVKESIGNALKAVGLLD--GPANIDLIVTP-EGLV 265

Query: 258 FWLEINV------QPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             +EI         P +T +          G S+  L+   +++A
Sbjct: 266 HIIEIGARVGATCLPELTSIY--------TGISWETLV---IQNA 299


>gi|290509481|ref|ZP_06548852.1| urea carboxylase [Klebsiella sp. 1_1_55]
 gi|289778875|gb|EFD86872.1| urea carboxylase [Klebsiella sp. 1_1_55]
          Length = 1201

 Score = 82.5 bits (203), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 27/197 (13%), Positives = 69/197 (35%), Gaps = 12/197 (6%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---QHLISPPYVIKP 132
            + +             K  ++ +  + GVP+     +   + ++      +  P ++K 
Sbjct: 99  GLAFVGPTPQQLRTFGLKHTARALAKAEGVPLLEGSELLADSEEACQAAEAVGYPVMLKS 158

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQLLIEQYVD-GIELTCGVMGDASL 187
             GG  +G+ V +  + +                   + +E+Y++    L   + GD   
Sbjct: 159 TAGGGGIGMRVCRDARELSEAFATVQRLGQNNFSDAGVFLEKYIERARHLEVQIFGDGEG 218

Query: 188 DVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           +V  + V          K             +P  + + +   A    +A+  R     +
Sbjct: 219 EVIALGVRDCSLQRRNQK----VIEETPAPNLPDGMAQALCSAAIALGKAVNYRSAGTVE 274

Query: 248 FLFDPLSRKVFWLEINV 264
           F++D  +++ ++LE+N 
Sbjct: 275 FVYDSAAQRFYFLEVNT 291


>gi|206578981|ref|YP_002238457.1| urea carboxylase [Klebsiella pneumoniae 342]
 gi|206568039|gb|ACI09815.1| urea carboxylase [Klebsiella pneumoniae 342]
          Length = 1201

 Score = 82.5 bits (203), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 27/197 (13%), Positives = 69/197 (35%), Gaps = 12/197 (6%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---QHLISPPYVIKP 132
            + +             K  ++ +  + GVP+     +   + ++      +  P ++K 
Sbjct: 99  GLAFVGPTPQQLRTFGLKHTARALAKAEGVPLLEGSELLADSEEACRAAEAVGYPVMLKS 158

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQLLIEQYVD-GIELTCGVMGDASL 187
             GG  +G+ V +  + +                   + +E+Y++    L   + GD   
Sbjct: 159 TAGGGGIGMRVCRDARELSEAFATVQRLGQNNFSDAGVFLEKYIERARHLEVQIFGDGEG 218

Query: 188 DVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           +V  + V          K             +P  + + +   A    +A+  R     +
Sbjct: 219 EVIALGVRDCSLQRRNQK----VIEETPAPNLPDGMAQALCSAAIALGKAVNYRSAGTVE 274

Query: 248 FLFDPLSRKVFWLEINV 264
           F++D  +++ ++LE+N 
Sbjct: 275 FVYDSAAQRFYFLEVNT 291


>gi|55736467|gb|AAV60109.1| biotin carboxylase subunit [Streptococcus thermophilus LMG 18311]
 gi|55738352|gb|AAV61993.1| biotin carboxylase subunit [Streptococcus thermophilus CNRZ1066]
 gi|312277792|gb|ADQ62449.1| Biotin carboxylase / acetyl-coenzyme A carboxylase carboxyl
           transferase subunit alpha [Streptococcus thermophilus
           ND03]
          Length = 461

 Score = 82.5 bits (203), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 75/220 (34%), Gaps = 16/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  FG   E+     + E + I +            DK+ ++  +    VPV P    
Sbjct: 82  AIHPGFGFLSENSKFATLCEEMNIKFIGPSGEIMDKMGDKINARAEMIRANVPVIPGSDG 141

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
            +      ++  + +  P ++K   GG   GI  +   + +      +S           
Sbjct: 142 EVFTAEEALEVANRLGYPVMLKASAGGGGKGIRKVNTKEELAPAFESASQEAKVSFGNGA 201

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+ +     +   ++GD+  ++  +            K             I   + 
Sbjct: 202 MYIEKVIYPARHIEVQILGDSYGNIVHLGERDCSLQRNNQKVL----EESPSVAIGKTLR 257

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            E+   A  A +A+        +FL D  S + +++E+N 
Sbjct: 258 HEIGSAAVRAAKAVNYENAGTIEFLLDEKSGQFYFMEMNT 297


>gi|222152897|ref|YP_002562074.1| carbamoyl phosphate synthase large subunit [Streptococcus uberis
           0140J]
 gi|254813606|sp|B9DRV7|CARB_STRU0 RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|222113710|emb|CAR41663.1| carbamoyl-phosphate synthase large chain [Streptococcus uberis
           0140J]
          Length = 1058

 Score = 82.5 bits (203), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 38/291 (13%), Positives = 99/291 (34%), Gaps = 30/291 (10%)

Query: 24  SALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ----- 69
            A++ AG++   +         D   S  L    L  +   NV+     E  ++Q     
Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSISDKLYFEPLTVEDVMNVIDLERPEGVILQFGGQT 638

Query: 70  -----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQH 122
                  L+   +P   + +     + ++   ++ +    +P      V   +  +    
Sbjct: 639 AINLAEALDKANVPILGTQVRDLDRAENRQLFEKALHDINIPQPLGQTVTNEQEALQVAR 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + ++ +++ +   +  +   +    +LI+ Y+ G E     +
Sbjct: 699 RIGFPVLVRPSYVIGGRAMQIVTQEEDLLTYMQSAVKVSSDQPVLIDSYILGQECEVDAI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P  +  DI + +          + C+G
Sbjct: 759 SDGQDVLIPGIMEHIEAAGV---HSGDSMAVYPPQNLSEDIIQTIIDYTKRLAINLNCKG 815

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+     + V+ +E+N +   T     P M+   G    ++   ++
Sbjct: 816 MMNIQFVV--KDKTVYVIEVNPRASRT----VPFMSKVTGIPMAQVATKLI 860



 Score = 69.4 bits (169), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 44/273 (16%), Positives = 99/273 (36%), Gaps = 31/273 (11%)

Query: 20  KACASALEDAGFKVSQID---------------------VDRSVGLVLAHLKPDLAFNVL 58
           +AC  AL++ G++V  ++                         V  +L   +PD     L
Sbjct: 32  QACL-ALKEEGYEVVLVNSNPATIMTDKEIADRVYIEPLTTEFVSRILRKERPDALLPTL 90

Query: 59  HGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
            G  G +  +      IL  L +    + + A   + D+ + K ++ +   P+  S +V+
Sbjct: 91  GGQTGLNLAMSLSETGILNELGVELLGTKLSAINQAEDREQFKALMKALKQPIPESDIVH 150

Query: 115 --RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                +     I  P +++P       G  +   D  +     +    +  +Q LIE+ +
Sbjct: 151 SVEEALLFASQIGYPVIVRPAFTLGGTGGGICTNDIELEDITAKGLKLSPVNQCLIEKSI 210

Query: 173 DG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
            G  E+   VM D++ +   + V   + +     ++  +        +    ++ ++  +
Sbjct: 211 AGFKEIEYEVMRDSADNA--LVVCNMENFDPVGIHTGDSIVFAPSQTLSDYEHQLLRDAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
               +A+   G        DP S   + +E+N 
Sbjct: 269 LKIIRALKIEGGCNVQLALDPNSFDYYVIEVNP 301


>gi|326797457|ref|YP_004315276.1| acetyl-CoA carboxylase, biotin carboxylase [Sphingobacterium sp.
           21]
 gi|326548221|gb|ADZ76606.1| acetyl-CoA carboxylase, biotin carboxylase [Sphingobacterium sp.
           21]
          Length = 446

 Score = 82.5 bits (203), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 81/221 (36%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+    AI     I +  +         DK  +K+ + + GVP  P    
Sbjct: 77  AIHPGYGFLSENEKFSAICRDYGIKFIGATPEQIRSMGDKASAKETMKNAGVPTIPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS-----SSWNHGD 164
            +      +   + I  P ++K   GG   G+ V+ KD         +     +++ +  
Sbjct: 137 LVPNVSEGLKIANEIGYPVILKATAGGGGRGMRVVWKDSEFEPAWDSARQEAGAAFGNDG 196

Query: 165 QLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            + +E++V D   +   V+GD    V  ++           K             I  ++
Sbjct: 197 -IYLEKFVEDPRHIEIQVIGDQYGTVCHLSERDCSIQRRHQK----LVEEAPSPFITPEL 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +++   A    +A+   G    +FL D   R  +++E+N 
Sbjct: 252 RQKMGDAAIAGAKAVKYEGAGTIEFLVDKH-RNFYFMEMNT 291


>gi|168187331|ref|ZP_02621966.1| acetyl-CoA carboxylase, biotin carboxylase [Clostridium botulinum C
           str. Eklund]
 gi|169294764|gb|EDS76897.1| acetyl-CoA carboxylase, biotin carboxylase [Clostridium botulinum C
           str. Eklund]
          Length = 447

 Score = 82.5 bits (203), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 32/220 (14%), Positives = 81/220 (36%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  FG   E+     +     I +    I       +K ++++++    VP+ P    
Sbjct: 77  AIHPGFGFLSENSKFAEMCNECNIIFIGPDIETMNNMGNKSKAREIMMKANVPIVPGTEG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGDQ 165
            +   +  +     I  P ++K   GG   GI +++    +         ++        
Sbjct: 137 NVERAKEALKEAERIGYPVMVKAAAGGGGRGIRIVRNSDELTKMFETAKREAEVAFGDGS 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E++V+    +   ++GD   +V  +            K             +  ++ 
Sbjct: 197 MYMEKFVENPKHVEIQILGDNHGNVVHLGERDCSIQRRNQKVL----EETPCPIMTKELR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            ++  +A  A +A+  +G    +FL D  + + +++E+N 
Sbjct: 253 MKMGDIAVKAAKAVNYKGAGTIEFLLDK-NGEFYFMEMNT 291


>gi|91774335|ref|YP_567027.1| pyruvate carboxylase subunit A [Methanococcoides burtonii DSM 6242]
 gi|91713350|gb|ABE53277.1| pyruvate carboxylase subunit A [Methanococcoides burtonii DSM 6242]
          Length = 498

 Score = 82.5 bits (203), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 80/220 (36%), Gaps = 20/220 (9%)

Query: 58  LHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
           +H  +G   E+ +     +   I +             K+ +++++   GVPV P     
Sbjct: 78  IHPGYGFLSENPVFAKKCKAAGIVFIGPSSEVIEKMGSKIAARKLMIEAGVPVVPGYDKA 137

Query: 115 RFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGDQ 165
              +D        I  P +IK   GG  +G+ V+         L     +  S++     
Sbjct: 138 IEDVDEALEMADSIGYPVMIKASAGGGGIGMKVVYSKDEFQSSLESIQSVAQSAFG-DPT 196

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+YV+    +   ++ D+  +   ++  +        K             +  ++ 
Sbjct: 197 VFIEKYVEEPRHIEFQILADSHGNTVYVSDRECSIQRRHQK----LMEEAPSPVLSPELR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K++   A  A ++IG       +FL+       ++LE+N 
Sbjct: 253 KKMGEAAVKAVKSIGYENAGTVEFLYSK--GDFYFLEVNT 290


>gi|329894588|ref|ZP_08270394.1| Biotin carboxylase of acetyl-CoA carboxylase [gamma proteobacterium
           IMCC3088]
 gi|328922942|gb|EGG30270.1| Biotin carboxylase of acetyl-CoA carboxylase [gamma proteobacterium
           IMCC3088]
          Length = 448

 Score = 82.5 bits (203), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 80/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+      +E     +         L  DK+ + + +   GVP  P    
Sbjct: 79  AIHPGYGFLAENADFAEQVERSGFIFIGPTADTIRLMGDKVSAIEAMKKAGVPTVPGSDG 138

Query: 111 --ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGD 164
                   T++    I  P ++K   GG   G+ V+  + ++   +     ++++    D
Sbjct: 139 PLTADADRTLEIARRIGYPVIVKAAAGGGGRGMRVVHNEAALLSSVQVTQSEAAAAFGSD 198

Query: 165 QLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + IE+Y+     +   V+ D    V              L+          PA  IP +
Sbjct: 199 VVYIEKYLQRPRHVEIQVLADGQGGVV-----HLGDRDCSLQRRHQKVIEEAPAPGIPDE 253

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + + V      A + IG RG    +FL+       +++E+N 
Sbjct: 254 LRQAVGESCVNACKTIGYRGAGTFEFLY--EDGGFYFIEMNT 293


>gi|262046684|ref|ZP_06019645.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus
           crispatus MV-3A-US]
 gi|260573133|gb|EEX29692.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus
           crispatus MV-3A-US]
          Length = 1062

 Score = 82.5 bits (203), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 42/297 (14%), Positives = 96/297 (32%), Gaps = 38/297 (12%)

Query: 22  CASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ--- 69
           C  AL+  G++   I         D   S  L    L  +   NV      E  +VQ   
Sbjct: 577 CVKALQKMGYEAIVINSNPETVSTDFSISDKLYFEPLTLEDVLNVCDLEKPEGVIVQFGG 636

Query: 70  -------AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDS 120
                    LE   +    + +     + D+    Q++    +     +        +++
Sbjct: 637 QTSINLAHGLEEHGVKILGTKVADVNRAEDRELFDQIIKQLHLNQPQGLTATTHEGVLEA 696

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P +++P        + ++     +   L           +L++ Y+DG E    
Sbjct: 697 ADKLGYPVLVRPSYVLGGKAMEIVYTKAELEEYLQDHVDIAADHPILVDDYLDGRECDVD 756

Query: 181 VMGDAS---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQ 236
            + D     L      +  +  +S        +S  V P +    ++ +++  +      
Sbjct: 757 AISDGKEVLLPGIMEHIEHAGVHS-------GDSMAVYPPQTFSDEVKEKITDVTRKLAL 809

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            + C GI    F+      +V+ +E+N +   T     P ++   G    ++   ++
Sbjct: 810 TLNCVGIMNIQFIVR--DGEVYVIEVNPRASRT----VPFLSKITGIEMAQVATRVI 860



 Score = 73.6 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 49/289 (16%), Positives = 99/289 (34%), Gaps = 39/289 (13%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI---------DVD------------RSVGLV 45
           G ++E + S   G     AL + G++V  +         D               S+  +
Sbjct: 21  GQAAEFDYS---GTQACLALREEGYEVVLVNSNPATIMTDTTIADKVYIEPLTVESISRI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +    PD     L G  G +  ++     IL+ L I    + + +   + D+ + K++  
Sbjct: 78  IRQEYPDAILPTLGGQVGLNMAMELAKTGILDELHIELLGTKLQSIEQAEDREKFKELCK 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
           S G PV PS  VN     +     I  P +++P       G  +    + +         
Sbjct: 138 SLGEPVPPSKTVNTVEDALALGDEIGYPIIVRPAFTMGGTGGGICNNHEELAEIAKNGLE 197

Query: 160 WNHGDQLLIEQYVDG---IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216
            +   + LIE+ + G   +E       D +  +            +     + +S    P
Sbjct: 198 LSPVTECLIEKSIAGYKEVEFEVMRDHDDNAMIVCCMENFDPVGIH-----TGDSIVFSP 252

Query: 217 AK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           ++ +    Y+ ++  +    +A+   G        DP S     +E+N 
Sbjct: 253 SQTLSDKEYQMLRDCSLRLIRALKIEGGCNVQLALDPNSFNYDVIEVNP 301


>gi|242053347|ref|XP_002455819.1| hypothetical protein SORBIDRAFT_03g025720 [Sorghum bicolor]
 gi|241927794|gb|EES00939.1| hypothetical protein SORBIDRAFT_03g025720 [Sorghum bicolor]
          Length = 1171

 Score = 82.5 bits (203), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 52/280 (18%), Positives = 99/280 (35%), Gaps = 38/280 (13%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D D              V  ++   +PD    
Sbjct: 97  SGTQACKALAEEGYEVVLVNSNPATIMTDPDLAHRTYIGPMTPPLVERIIDAERPDALLP 156

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G    +  V       L+ L +    + + A   + D+   KQ +   G+   PS  
Sbjct: 157 TMGGQTALNLAVSLADSGALDRLGVRLIGASLPAIRAAEDRQLFKQAMDRIGLKTPPSGI 216

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
              +      ++ +   P +++P       G  +               + +H  Q+L+E
Sbjct: 217 GTTLEECLAIAEDIGEFPLIVRPAFTLGGTGGGIAYNRAEFEDICRAGLAASHTQQVLVE 276

Query: 170 QYVDG-IELTCGVMGDASLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPAK-IPLDIYKE 226
           + + G  E    VM D + +V  I   ++ D           +S  V PA+ +    Y+ 
Sbjct: 277 KSLLGWKEYELEVMRDMADNVVIICSIENIDPMGVHT----GDSITVAPAQTLTDKEYQR 332

Query: 227 VQRLAFLAHQAIG--CRGISRSDFLFDPLSRKVFWLEINV 264
           ++  +    + IG  C G S   F  +P   +V  +E+N 
Sbjct: 333 LRDYSVAIIREIGVECGG-SNVQFAVNPADGEVMIIEMNP 371



 Score = 55.5 bits (133), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 25/193 (12%), Positives = 68/193 (35%), Gaps = 8/193 (4%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--FTMDSQHLISPPYVIKPL 133
            +    +   +   + D+ R   ++   G+      +       +     I  P V++P 
Sbjct: 738 NVKIWGTSPDSIDAAEDRKRFNAILEELGIEQPKGGIARSESDALAIASEIGYPVVVRPS 797

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVMGDASLDVTEI 192
                  + ++  D+ +   L  +   +    +L+++Y +D +E+    + D + +V   
Sbjct: 798 YVLGGRAMEIVYNDEKLIKYLATAVQVDPERPVLVDKYLIDAVEIDVDALADTAGNVVIG 857

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
            + +   +  +    S +S   LP + +     + ++       + +   G+    +   
Sbjct: 858 GIME---HIEQAGIHSGDSACSLPTRTVSAQCLEVIRSWTTKLAKRLNVCGLMNCQYAIS 914

Query: 252 PLSRKVFWLEINV 264
                VF LE N 
Sbjct: 915 TS-GDVFLLEANP 926


>gi|226363559|ref|YP_002781341.1| acyl-CoA carboxylase [Rhodococcus opacus B4]
 gi|226242048|dbj|BAH52396.1| putative acyl-CoA carboxylase [Rhodococcus opacus B4]
          Length = 1828

 Score = 82.5 bits (203), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 45/235 (19%), Positives = 81/235 (34%), Gaps = 14/235 (5%)

Query: 39  DRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQ 98
              +   L   K D  + V  G   ED     +   L I +      +  L  DK+ +K 
Sbjct: 69  HAELARALRESKADAVW-VGWGFVAEDPAFVEVCNQLGITFIGPPAESMRLLGDKVEAKL 127

Query: 99  VVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154
           +     VPV P     +            I  P +IK   GG   GI  +  +  + L L
Sbjct: 128 LAEKVDVPVAPWSGGPVATRADARRHAQAIGYPLIIKARSGGGGRGIRKVWSEDELELAL 187

Query: 155 L----QSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209
                ++        + IE+ V D   +   V+ D   +V    V          K    
Sbjct: 188 ERTQGEAQRSFGDPVVFIERLVTDARHVEVQVIADQHGNVWAPGVRDCSIQRKNQKVIEE 247

Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +S+      +  +    ++ ++    +A G  G +  ++L+ P  +   +LE+N 
Sbjct: 248 SSS----PLLTAEQSNNLRAVSADLVRAAGYHGAATVEYLYQPEQKSFTFLEVNT 298


>gi|150403262|ref|YP_001330556.1| pyruvate carboxylase subunit A [Methanococcus maripaludis C7]
 gi|150034292|gb|ABR66405.1| acetyl-CoA carboxylase, biotin carboxylase [Methanococcus
           maripaludis C7]
          Length = 494

 Score = 82.5 bits (203), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 38/235 (16%), Positives = 86/235 (36%), Gaps = 18/235 (7%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
             +  V      D      +G   E+           I +      A  +   K+ +K+ 
Sbjct: 64  ERILKVAEKAGVDAVHPG-YGFLSENVKFAEECNKRGIEFIGPPTNAIDVMGSKINAKKA 122

Query: 100 VSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL- 154
           +   GVPV P     I      ++    I  P +IK   GG  +G+ V+   + +   + 
Sbjct: 123 MKIAGVPVLPGREEPIESEDEAIEVADEIGYPVIIKASAGGGGIGMNVVYNKEELVDTIQ 182

Query: 155 ----LQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209
               +  S++     + IE+Y++    +   ++ D   +V  +   +        K    
Sbjct: 183 STKSIAQSAFG-DSTVFIEKYLEKPRHIEIQIVADKFGNVIHLGDRECSIQRRHQKLIEE 241

Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + + ++      ++ + +   A  A +AI    +   +FL+   + + ++LE+N 
Sbjct: 242 SPSPIM----TEELRERMGNAAVKAAKAINYHSVGTVEFLY--SNGEFYFLEMNT 290


>gi|331008554|gb|EGH88610.1| 3-methylcrotonyl-CoA carboxylase alpha subunit [Pseudomonas
           syringae pv. tabaci ATCC 11528]
          Length = 649

 Score = 82.5 bits (203), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 78/221 (35%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      +E   + +      A      K  +K ++   GVP+ P    
Sbjct: 81  AIHPGYGFLSENADFARAIEEAGLIFLGPPASAIDAMGSKSAAKSLMEQAGVPLVPGYHG 140

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
           +   ++    +   I  P ++K   GG   G+ V++    +   L  +           +
Sbjct: 141 DAQDIETFRSAAERIGYPVLLKATAGGGGKGMKVVEHSGELAEALASAQREALSSFGDAR 200

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           +L+E+YV     +   V  D       +            K          PA  +  ++
Sbjct: 201 MLVEKYVLTPRHVEIQVFADRHGHCLYLNERDCSIQRRHQK-----VVEEAPAPGLTPEL 255

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            K +   A  A QAIG  G    +FL D    + F++E+N 
Sbjct: 256 RKAMGEAAVKAAQAIGYVGAGTVEFLLDAR-GEFFFMEMNT 295


>gi|295693231|ref|YP_003601841.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus
           crispatus ST1]
 gi|295031337|emb|CBL50816.1| Carbamoyl-phosphate synthase, large subunit [Lactobacillus
           crispatus ST1]
          Length = 1062

 Score = 82.5 bits (203), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 42/297 (14%), Positives = 96/297 (32%), Gaps = 38/297 (12%)

Query: 22  CASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ--- 69
           C  AL+  G++   I         D   S  L    L  +   NV      E  +VQ   
Sbjct: 577 CVKALQKMGYEAIVINSNPETVSTDFSISDKLYFEPLTLEDVLNVCDLEKPEGVIVQFGG 636

Query: 70  -------AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDS 120
                    LE   +    + +     + D+    Q++    +     +        +++
Sbjct: 637 QTSINLAHGLEEHGVKILGTKVADVNRAEDRELFDQIIKQLHLNQPQGLTATTHEGVLEA 696

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P +++P        + ++     +   L           +L++ Y+DG E    
Sbjct: 697 ADKLGYPVLVRPSYVLGGKAMEIVYTKAELEEYLQDHVDIAADHPILVDDYLDGRECDVD 756

Query: 181 VMGDAS---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQ 236
            + D     L      +  +  +S        +S  V P +    ++ +++  +      
Sbjct: 757 AISDGKEVLLPGIMEHIEHAGVHS-------GDSMAVYPPQTFSDEVKEKITDVTRKLAL 809

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            + C GI    F+      +V+ +E+N +   T     P ++   G    ++   ++
Sbjct: 810 TLNCVGIMNIQFIVR--DGEVYVIEVNPRASRT----VPFLSKITGIEMAQVATRVI 860



 Score = 74.0 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 49/289 (16%), Positives = 99/289 (34%), Gaps = 39/289 (13%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI---------DVD------------RSVGLV 45
           G ++E + S   G     AL + G++V  +         D               S+  +
Sbjct: 21  GQAAEFDYS---GTQACLALREEGYEVVLVNSNPATIMTDTTIADKVYIEPLTVESISRI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +    PD     L G  G +  ++     IL+ L I    + + +   + D+ + K++  
Sbjct: 78  IRQEYPDAILPTLGGQVGLNMAMELAKTGILDELHIELLGTKLQSIEQAEDREKFKELCK 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
           S G PV PS  VN     +     I  P +++P       G  +    + +         
Sbjct: 138 SLGEPVPPSKTVNTVEDALAFGDEIGYPIIVRPAFTMGGTGGGICNNHEELAEIAKNGLE 197

Query: 160 WNHGDQLLIEQYVDG---IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216
            +   + LIE+ + G   +E       D +  +            +     + +S    P
Sbjct: 198 LSPVTECLIEKSIAGYKEVEFEVMRDHDDNAMIVCCMENFDPVGIH-----TGDSIVFSP 252

Query: 217 AK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           ++ +    Y+ ++  +    +A+   G        DP S     +E+N 
Sbjct: 253 SQTLSDKEYQMLRDCSLRLIRALKIEGGCNVQLALDPNSFNYDVIEVNP 301


>gi|292670823|ref|ZP_06604249.1| carbamoyl-phosphate synthase [Selenomonas noxia ATCC 43541]
 gi|292647444|gb|EFF65416.1| carbamoyl-phosphate synthase [Selenomonas noxia ATCC 43541]
          Length = 1075

 Score = 82.5 bits (203), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 55/289 (19%), Positives = 119/289 (41%), Gaps = 39/289 (13%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQIDVDRS---------------------VGLV 45
           G ++E + +   G     AL++ G +V  ++ + +                     +  +
Sbjct: 21  GQAAEFDYA---GSQACRALKEDGLEVVLVNSNPATIMTDTNIADRVYIEPLTVDFLEEI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           L+  KPD     L G  G +  VQ     ILE   +    + + A   + D+ R K+ + 
Sbjct: 78  LSKEKPDGLLATLGGQAGLNLAVQLAEKGILEQHGVELLGTSLDAIEKAEDRERFKETME 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G P+  S +V   R  ++  + I  P +++P       G  + + ++ +   +++  +
Sbjct: 138 KLGEPIPESTIVEDVRSAVEFANSIGYPVIVRPAYTMGGTGGGIAENEEELIAIVIKGLN 197

Query: 160 WNHGDQLLIEQYVDG---IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216
           ++   Q+LIE+ V G   IE      G+ +     I V   + +     ++  +S  V P
Sbjct: 198 YSMIGQVLIERSVAGWKEIEFEVIRDGNDN----CITVCSMENFDPVGVHT-GDSIVVAP 252

Query: 217 AK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           A+ +    Y+ ++  +    + +G  G   + +  D +S K + +E+N 
Sbjct: 253 AQTLTDHEYQMLRSASLRIIRELGIEGGCNAQYALDTMSDKYYVIEVNP 301



 Score = 69.8 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 43/263 (16%), Positives = 94/263 (35%), Gaps = 30/263 (11%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLV------- 68
           AL + G +   I         D D S  L    L  +   N++      DG++       
Sbjct: 582 ALREMGIEAIIINNNPETVSTDFDISDRLYFEPLTVEDVLNIVD-KEKPDGIIVQFGGQT 640

Query: 69  ----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQH 122
                A LE   +    + +     S D+ R  +V++  G+     I V      +    
Sbjct: 641 AINLAAELERAGLRIYGTSVNDIDRSEDRERFDEVLTQTGISRPEGISVTNLEDAIAGAE 700

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + ++  ++ +   + ++        +L+++Y+ G E+    +
Sbjct: 701 RIGYPVMVRPSYVLGGRAMEIVYNEEELRDYMGRAVKVTPDHPVLVDRYMQGTEVEVDAI 760

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCR 241
            D      ++ +P    +       S +S  V P + +P  +   +         A+  +
Sbjct: 761 SDG----VDVVIPGIMEHIERAGIHSGDSIAVYPPQTLPARVIYTIIDYTKRLAVALHVK 816

Query: 242 GISRSDFLFDPLSRKVFWLEINV 264
           G+    F+      +VF +E+N 
Sbjct: 817 GLLNIQFVVVR--DEVFIIEVNP 837


>gi|222150234|ref|YP_002551191.1| pyruvate carboxylase [Agrobacterium vitis S4]
 gi|221737216|gb|ACM38179.1| pyruvate carboxylase [Agrobacterium vitis S4]
          Length = 1153

 Score = 82.5 bits (203), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 32/200 (16%), Positives = 75/200 (37%), Gaps = 15/200 (7%)

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVI 130
             + +            +K+ ++ +    GVPV P+       MD+       I  P ++
Sbjct: 106 AGLIFIGPRSDTMRQLGNKVAARNLAVEVGVPVVPATEPLPDDMDTVAKMAGEIGYPLML 165

Query: 131 KPLKGGSSLGIIVIKKDQSIP----LDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDA 185
           K   GG   G+ VI+ +  +         ++ +    D++ +E+ V+    +   ++GD 
Sbjct: 166 KASWGGGGRGMRVIRSESDLAREVTEAKREAKAAFGKDEVYLEKLVENARHVESQILGDT 225

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGIS 244
             +               ++  +       PA  +  +  +E+   +    +A G  G  
Sbjct: 226 HGNAV-----HLFERDCSVQRRNQKVVERAPAPYLSEEQRQELAAYSLKIARATGYIGAG 280

Query: 245 RSDFLFDPLSRKVFWLEINV 264
             ++L D  + K +++E+N 
Sbjct: 281 TVEYLMDADTGKFYFIEVNP 300


>gi|299770608|ref|YP_003732634.1| Acetyl/propionyl-CoA carboxylase, alpha subunit [Acinetobacter sp.
           DR1]
 gi|298700696|gb|ADI91261.1| Acetyl/propionyl-CoA carboxylase, alpha subunit [Acinetobacter sp.
           DR1]
          Length = 663

 Score = 82.5 bits (203), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 79/221 (35%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       +   I +    + A      K  SK ++   GVP+ P    
Sbjct: 77  AVHPGYGFLSENDQFALACQQHNICFIGPPVDAILAMGLKATSKALMEKAGVPLTPGYHG 136

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
                D        I  P +IK   GG   G+ ++++ +     L     ++ S    D 
Sbjct: 137 TNQDADFLKQQADRIGYPVLIKASAGGGGKGMSLVERSEDFLHALASCKREAKSSFGNDD 196

Query: 166 LLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDI 223
           +LIE+Y +    +   V GD   +               ++          PA ++P + 
Sbjct: 197 VLIERYVIQPRHIEVQVFGDTHGNYV-----HLFERDCSVQRRHQKVLEEAPAPQMPSEK 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              +++ A  A +A+   G    +F+        +++E+N 
Sbjct: 252 LDAMRQAAIDAARAVDYVGAGTVEFIV-EQDGTAYFMEMNT 291


>gi|119479537|ref|XP_001259797.1| 3-methylcrotonyl-CoA carboxylase subunit alpha (MccA), putative
           [Neosartorya fischeri NRRL 181]
 gi|119407951|gb|EAW17900.1| 3-methylcrotonyl-CoA carboxylase subunit alpha (MccA), putative
           [Neosartorya fischeri NRRL 181]
          Length = 712

 Score = 82.5 bits (203), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 54/287 (18%), Positives = 98/287 (34%), Gaps = 44/287 (15%)

Query: 13  EVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFN---------------- 56
           E++L  G+  +      G KV+ +  D       A   P  AFN                
Sbjct: 48  EIALRVGRTASQY----GIKVTTLYTDPDRHAQHALSSP-FAFNLGSVSAYLDGDRIIEI 102

Query: 57  -------VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP 106
                   +H  +G   E+           + +      A     DK +SK+++++ GVP
Sbjct: 103 AKREGCQAIHPGYGFLSENSEFARKCTEAGLVFIGPPWKAIEDMGDKSQSKKIMTAAGVP 162

Query: 107 VCPSILVNRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
             P    +   ++        I  P +IK +KGG   G+ + +        L  + S   
Sbjct: 163 CVPGYHGSNQDVNFLEAEADKIRYPVLIKAVKGGGGKGMRIARSKAEFQAQLQSAKSEAM 222

Query: 163 ----GDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
                D +L+E+Y+     +   V  D   +   +            K            
Sbjct: 223 NSFGDDHVLVEKYITTPRHIEVQVFADKHGNCVALGERDCSIQRRHQKIL----EESPAP 278

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +P    K++   A  A  A+G  G    +F+FD  + + F++E+N 
Sbjct: 279 HLPDATRKDIWAKARAAALAVGYEGAGTVEFIFDNDTGEFFFMEMNT 325


>gi|83593652|ref|YP_427404.1| pyruvate carboxylase [Rhodospirillum rubrum ATCC 11170]
 gi|83576566|gb|ABC23117.1| Pyruvate carboxylase [Rhodospirillum rubrum ATCC 11170]
          Length = 1146

 Score = 82.5 bits (203), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 39/242 (16%), Positives = 82/242 (33%), Gaps = 30/242 (12%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRS 96
             +  +    K D     +H  +G   ED           I +            +K+ +
Sbjct: 68  DDIIDIATREKID----AIHPGYGFLSEDPAFAEACAAAGIRFIGPTPETLRQLGNKVAA 123

Query: 97  KQVVSSCGVPVCPSI--------LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQ 148
           + +  S GVPV P+         +++R   D    I  P ++K   GG   G+  I  ++
Sbjct: 124 RNLARSLGVPVMPATGPLPTDPGVIHRLAKD----IGYPVMLKASWGGGGRGMRPIDSEE 179

Query: 149 SIPLDL-----LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYE 203
            +   +       ++++   +  L +       +   ++GD+   +  +           
Sbjct: 180 HLLDAVTTSRREAAAAFGKDEVYLEKLVRAARHVEVQLLGDSHGTLVHLFERDCSIQRRH 239

Query: 204 LKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
            K          PA  +  +  + +   A    +A G  G    +FL D  +   F++E+
Sbjct: 240 QK-----VIERAPAPYLDSETRRRLTDAALKIGRATGYVGAGTVEFLMDVATNDFFFIEV 294

Query: 263 NV 264
           N 
Sbjct: 295 NP 296


>gi|218439974|ref|YP_002378303.1| acetyl-CoA carboxylase biotin carboxylase subunit [Cyanothece sp.
           PCC 7424]
 gi|218172702|gb|ACK71435.1| acetyl-CoA carboxylase, biotin carboxylase [Cyanothece sp. PCC
           7424]
          Length = 448

 Score = 82.5 bits (203), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 76/220 (34%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     I    +I +      A     DK  +K+ +    VP  P    
Sbjct: 78  AIHPGYGFLAENARFAEICADHQITFIGPSPEAILAMGDKSTAKKTMQRANVPTVPGSGG 137

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
            I   +        I  P +IK   GG   G+ +++ +  +P  L  +            
Sbjct: 138 LIDSEKQAKAIAADIGYPVLIKATAGGGGRGMRLVRNESELPSLLQAAQGEAGAAFGNSG 197

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E++++    +   ++ D   +V  +            K             +   + 
Sbjct: 198 VYLEKFIECPRHIEFQILADQYGNVIHLGERDCSIQRRHQKLL----EEAPSPFLTPQLR 253

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +++ + A  A ++I   G    +FL D      +++E+N 
Sbjct: 254 EKMGQAAIKAAKSINYVGAGTVEFLVDIHGN-FYFMEMNT 292


>gi|126641323|ref|YP_001084307.1| allophanate hydrolase subunit 2 [Acinetobacter baumannii ATCC
           17978]
 gi|126387207|gb|ABO11705.1| Allophanate hydrolase subunit 2 [Acinetobacter baumannii ATCC
           17978]
          Length = 900

 Score = 82.5 bits (203), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 41/257 (15%), Positives = 89/257 (34%), Gaps = 32/257 (12%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+     + E   I +             K  ++++     VP+ P   +
Sbjct: 49  AIHPGYGFLSENAEFCDLCESQGIAFIGPTSSQMLDFGLKHTARELAIKSNVPLLPGSSL 108

Query: 114 NRFTMDS---QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN----HGDQL 166
                ++      I  P ++K   GG  +G+ ++  +  +       S           L
Sbjct: 109 LANEAEALTEAARIGYPVMLKSTAGGGGIGMRLVWNETELKDAYQTVSYLAQVNFKDAGL 168

Query: 167 LIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIY 224
            +E++V     +   + GD    V  +           ++  +       PA  +     
Sbjct: 169 YLEKFVQHARHIEVQIFGDGQGKVLALGE-----RDCSVQRRNQKVIEETPAPHLNEQQR 223

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
             +Q++A    Q++  R     +F+ D  +++ ++LE+N             +    G +
Sbjct: 224 DYLQKVAIQLMQSVNYRSAGTVEFVMDTETQEFYFLEVNT-----------RLQVEHGVT 272

Query: 285 ---FR-ELLLWMVEDAS 297
              F  +L+ WMV  AS
Sbjct: 273 EQVFGVDLVEWMVTLAS 289


>gi|161611296|ref|YP_138924.2| acetyl-CoA carboxylase biotin carboxylase subunit [Streptococcus
           thermophilus LMG 18311]
 gi|161936379|ref|YP_140808.2| acetyl-CoA carboxylase biotin carboxylase subunit [Streptococcus
           thermophilus CNRZ1066]
          Length = 456

 Score = 82.5 bits (203), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 75/220 (34%), Gaps = 16/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  FG   E+     + E + I +            DK+ ++  +    VPV P    
Sbjct: 77  AIHPGFGFLSENSKFATLCEEMNIKFIGPSGEIMDKMGDKINARAEMIRANVPVIPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
            +      ++  + +  P ++K   GG   GI  +   + +      +S           
Sbjct: 137 EVFTAEEALEVANRLGYPVMLKASAGGGGKGIRKVNTKEELAPAFESASQEAKVSFGNGA 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+ +     +   ++GD+  ++  +            K             I   + 
Sbjct: 197 MYIEKVIYPARHIEVQILGDSYGNIVHLGERDCSLQRNNQKVL----EESPSVAIGKTLR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            E+   A  A +A+        +FL D  S + +++E+N 
Sbjct: 253 HEIGSAAVRAAKAVNYENAGTIEFLLDEKSGQFYFMEMNT 292


>gi|148360921|ref|YP_001252128.1| acetyl CoA carboxylase biotin carboxylase subunit [Legionella
           pneumophila str. Corby]
 gi|148282694|gb|ABQ56782.1| acetyl CoA carboxylase, biotin carboxylase subunit [Legionella
           pneumophila str. Corby]
          Length = 447

 Score = 82.5 bits (203), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 48/293 (16%), Positives = 101/293 (34%), Gaps = 54/293 (18%)

Query: 13  EVSLSSGKACASALEDAGFKVSQI--DVDRSVGLVLAHLKP------------------- 51
           E++L        A ++ G +   +  DVD+ +  V    +                    
Sbjct: 12  EIALR----ILRACKELGIQTVAVHSDVDKDLLHVRLADETVCIGPAPAQKSYLNIPAII 67

Query: 52  ------DLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS 102
                 D     +H  +G   E+     I+E     +      +  L  DK+ +   + +
Sbjct: 68  SAAEITDAV--AIHPGYGFLSENADFADIVEQSGFRFIGPRGDSIRLMGDKVSAIAAMKA 125

Query: 103 CGVPVCPSILVNRFTMDSQHL-----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL-- 155
            GVP  P         D+++L     I  P +IK   GG   G+ V+  + ++   +   
Sbjct: 126 AGVPCVPGSDGPLGDDDNKNLELARKIGYPIIIKAAGGGGGRGMRVVHSESNLLSAIALT 185

Query: 156 --QSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212
             ++ +  +   + +E++++    +   V+GD       +            K       
Sbjct: 186 RSEAKAAFNNPIVYMEKFLENPRHVEFQVLGDGKGHAIHLGERDCSMQRRHQK-----VV 240

Query: 213 HVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              PA  I  ++ +E+      A + +  RG    +FLF       +++E+N 
Sbjct: 241 EEAPAPGITPELREEIGASVIKACKELQYRGAGTFEFLF--QDGCFYFIEMNT 291


>gi|114569693|ref|YP_756373.1| pyruvate carboxylase [Maricaulis maris MCS10]
 gi|114340155|gb|ABI65435.1| pyruvate carboxylase [Maricaulis maris MCS10]
          Length = 1146

 Score = 82.5 bits (203), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 32/221 (14%), Positives = 77/221 (34%), Gaps = 18/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-L 112
           ++H  +G   E+           + +            +K+ ++ +     VPV P+   
Sbjct: 79  LIHPGYGFLSENPDFAEACAAAGLTFIGPSPDVMKSLGNKVAARNMAVEAEVPVVPATGP 138

Query: 113 VNRFTMDS---QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
           +   + D       +  P ++K   GG   G+ VI++   +         ++ +     +
Sbjct: 139 LPDASDDWDTMAEAVGYPLMLKASWGGGGRGMRVIEEAGELHAQAEAGRREAEAAFGNGE 198

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDI 223
           + +E+ +     +   ++GD+  ++  +            K          PA  +  D 
Sbjct: 199 VYLEKLIRKARHIEVQILGDSHGNLVHLYERDCTVQRRNQK-----VVERAPAPDMGEDT 253

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              +   A    +  G  G    +FL D  + K +++E+N 
Sbjct: 254 RSAICEAALRLVRHAGYCGAGTVEFLLDAETGKFYFIEVNP 294


>gi|52840707|ref|YP_094506.1| acetyl CoA carboxylase, biotin carboxylase subunit [Legionella
           pneumophila subsp. pneumophila str. Philadelphia 1]
 gi|52627818|gb|AAU26559.1| acetyl CoA carboxylase, biotin carboxylase subunit [Legionella
           pneumophila subsp. pneumophila str. Philadelphia 1]
          Length = 449

 Score = 82.5 bits (203), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 48/293 (16%), Positives = 101/293 (34%), Gaps = 54/293 (18%)

Query: 13  EVSLSSGKACASALEDAGFKVSQI--DVDRSVGLVLAHLKP------------------- 51
           E++L        A ++ G +   +  DVD+ +  V    +                    
Sbjct: 14  EIALR----ILRACKELGIQTVAVHSDVDKDLLHVRLADETVCIGPAPAQKSYLNIPAII 69

Query: 52  ------DLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS 102
                 D     +H  +G   E+     I+E     +      +  L  DK+ +   + +
Sbjct: 70  SAAEITDAV--AIHPGYGFLSENADFADIVEQSGFRFIGPRGDSIRLMGDKVSAIAAMKA 127

Query: 103 CGVPVCPSILVNRFTMDSQHL-----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL-- 155
            GVP  P         D+++L     I  P +IK   GG   G+ V+  + ++   +   
Sbjct: 128 AGVPCVPGSDGPLGDDDNKNLELARKIGYPIIIKAAGGGGGRGMRVVHSESNLLSAIALT 187

Query: 156 --QSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212
             ++ +  +   + +E++++    +   V+GD       +            K       
Sbjct: 188 RSEAKAAFNNPIVYMEKFLENPRHVEFQVLGDGKGHAIHLGERDCSMQRRHQK-----VV 242

Query: 213 HVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              PA  I  ++ +E+      A + +  RG    +FLF       +++E+N 
Sbjct: 243 EEAPAPGITPELREEIGASVIKACKELQYRGAGTFEFLF--QDGCFYFIEMNT 293


>gi|54293455|ref|YP_125870.1| biotin carboxylase (A subunit of acetyl-CoA carboxylase)
           [Legionella pneumophila str. Lens]
 gi|54296497|ref|YP_122866.1| biotin carboxylase (A subunit of acetyl-CoA carboxylase)
           [Legionella pneumophila str. Paris]
 gi|296106013|ref|YP_003617713.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Legionella
           pneumophila 2300/99 Alcoy]
 gi|53750282|emb|CAH11676.1| Biotin carboxylase (A subunit of acetyl-CoA carboxylase)
           [Legionella pneumophila str. Paris]
 gi|53753287|emb|CAH14734.1| Biotin carboxylase (A subunit of acetyl-CoA carboxylase)
           [Legionella pneumophila str. Lens]
 gi|295647914|gb|ADG23761.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Legionella
           pneumophila 2300/99 Alcoy]
 gi|307609270|emb|CBW98738.1| biotin carboxylase [Legionella pneumophila 130b]
          Length = 447

 Score = 82.5 bits (203), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 48/293 (16%), Positives = 101/293 (34%), Gaps = 54/293 (18%)

Query: 13  EVSLSSGKACASALEDAGFKVSQI--DVDRSVGLVLAHLKP------------------- 51
           E++L        A ++ G +   +  DVD+ +  V    +                    
Sbjct: 12  EIALR----ILRACKELGIQTVAVHSDVDKDLLHVRLADETVCIGPAPAQKSYLNIPAII 67

Query: 52  ------DLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS 102
                 D     +H  +G   E+     I+E     +      +  L  DK+ +   + +
Sbjct: 68  SAAEITDAV--AIHPGYGFLSENADFADIVEQSGFRFIGPRGDSIRLMGDKVSAIAAMKA 125

Query: 103 CGVPVCPSILVNRFTMDSQHL-----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL-- 155
            GVP  P         D+++L     I  P +IK   GG   G+ V+  + ++   +   
Sbjct: 126 AGVPCVPGSDGPLGDDDNKNLELARKIGYPIIIKAAGGGGGRGMRVVHSESNLLSAIALT 185

Query: 156 --QSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212
             ++ +  +   + +E++++    +   V+GD       +            K       
Sbjct: 186 RSEAKAAFNNPIVYMEKFLENPRHVEFQVLGDGKGHAIHLGERDCSMQRRHQK-----VV 240

Query: 213 HVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              PA  I  ++ +E+      A + +  RG    +FLF       +++E+N 
Sbjct: 241 EEAPAPGITPELREEIGASVIKACKELQYRGAGTFEFLF--QDGCFYFIEMNT 291


>gi|325121811|gb|ADY81334.1| probable biotin carboxylase subunit of acetyl-CoA carboxylase
           [Acinetobacter calcoaceticus PHEA-2]
          Length = 663

 Score = 82.5 bits (203), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 79/221 (35%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       +   I +    + A      K  SK ++   GVP+ P    
Sbjct: 77  AVHPGYGFLSENDQFALACQQHNICFIGPPVDAILAMGLKATSKALMEKAGVPLTPGYHG 136

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
                D        I  P +IK   GG   G+ ++++ +     L     ++ S    D 
Sbjct: 137 TNQDADFLKQQADRIGYPVLIKASAGGGGKGMSLVERSEDFLHALASCKREAKSSFGNDD 196

Query: 166 LLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDI 223
           +LIE+Y +    +   V GD   +               ++          PA ++P + 
Sbjct: 197 VLIERYVIQPRHIEVQVFGDTHGNYV-----HLFERDCSVQRRHQKVLEEAPAPQMPSEK 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              +++ A  A +A+   G    +F+        +++E+N 
Sbjct: 252 LDAMRQAAIDAARAVNYVGAGTVEFIV-EQDGTAYFMEMNT 291


>gi|289168509|ref|YP_003446778.1| acetyl-CoA carboxylase biotin carboxylase subunit [Streptococcus
           mitis B6]
 gi|288908076|emb|CBJ22916.1| acetyl-CoA carboxylase biotin carboxylase subunit [Streptococcus
           mitis B6]
          Length = 455

 Score = 82.5 bits (203), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 41/220 (18%), Positives = 78/220 (35%), Gaps = 16/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  FG   E+     + E + I +         +  DK+ ++  +   GVPV P    
Sbjct: 77  AIHPGFGFLSENSKFATMCEEVGIKFIGPSGHVMDMMGDKINARAQMIKAGVPVIPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
            +  +   +     I  P ++K   GG   GI  ++K + +      +SS          
Sbjct: 137 EVHNSEEALIVAEKIGYPVMLKASAGGGGKGIRKVEKPEDLVSAFETASSEAKANYGNGA 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+ +     +   ++GD    V  +            K             I   + 
Sbjct: 197 MYIERVIYPARHIEVQILGDEHGHVIHLGERDCSLQRNNQKVL----EESPSIAIGKTLR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            E+   A  A +++G       +FL D  S K +++E+N 
Sbjct: 253 HEIGAAAVRAAESVGYENAGTIEFLLDESSGKFYFMEMNT 292


>gi|256843498|ref|ZP_05548986.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus
           crispatus 125-2-CHN]
 gi|293380106|ref|ZP_06626195.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus
           crispatus 214-1]
 gi|256614918|gb|EEU20119.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus
           crispatus 125-2-CHN]
 gi|290923319|gb|EFE00233.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus
           crispatus 214-1]
          Length = 1062

 Score = 82.5 bits (203), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 42/297 (14%), Positives = 96/297 (32%), Gaps = 38/297 (12%)

Query: 22  CASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ--- 69
           C  AL+  G++   I         D   S  L    L  +   NV      E  +VQ   
Sbjct: 577 CVKALQKMGYEAIVINSNPETVSTDFSISDKLYFEPLTLEDVLNVCDLEKPEGVIVQFGG 636

Query: 70  -------AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDS 120
                    LE   +    + +     + D+    Q++    +     +        +++
Sbjct: 637 QTSINLAHGLEEHGVKILGTKVADVNRAEDRELFDQIIKQLHLNQPQGLTATTHEGVLEA 696

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P +++P        + ++     +   L           +L++ Y+DG E    
Sbjct: 697 ADKLGYPVLVRPSYVLGGKAMEIVYTKAELEEYLQDHVDIAADHPILVDDYLDGRECDVD 756

Query: 181 VMGDAS---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQ 236
            + D     L      +  +  +S        +S  V P +    ++ +++  +      
Sbjct: 757 AISDGKEVLLPGIMEHIEHAGVHS-------GDSMAVYPPQTFSDEVKEKITDVTRKLAL 809

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            + C GI    F+      +V+ +E+N +   T     P ++   G    ++   ++
Sbjct: 810 TLNCVGIMNIQFIVR--DGEVYVIEVNPRASRT----VPFLSKITGIEMAQVATRVI 860



 Score = 74.0 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 49/289 (16%), Positives = 99/289 (34%), Gaps = 39/289 (13%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI---------DVD------------RSVGLV 45
           G ++E + S   G     AL + G++V  +         D               S+  +
Sbjct: 21  GQAAEFDYS---GTQACLALREEGYEVVLVNSNPATIMTDTTIADKVYIEPLTVESISRI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +    PD     L G  G +  ++     IL+ L I    + + +   + D+ + K++  
Sbjct: 78  IRQEYPDAILPTLGGQVGLNMAMELAKTGILDELHIELLGTKLQSIEQAEDREKFKELCK 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
           S G PV PS  VN     +     I  P +++P       G  +    + +         
Sbjct: 138 SLGEPVPPSKTVNTVEDALAFGDEIGYPIIVRPAFTMGGTGGGICNNHEELAEIAKNGLE 197

Query: 160 WNHGDQLLIEQYVDG---IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216
            +   + LIE+ + G   +E       D +  +            +     + +S    P
Sbjct: 198 LSPVTECLIEKSIAGYKEVEFEVMRDHDDNAMIVCCMENFDPVGIH-----TGDSIVFSP 252

Query: 217 AK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           ++ +    Y+ ++  +    +A+   G        DP S     +E+N 
Sbjct: 253 SQTLSDKEYQMLRDCSLRLIRALKIEGGCNVQLALDPNSFNYDVIEVNP 301


>gi|227878920|ref|ZP_03996823.1| carbamoyl-phosphate synthase (glutamine-hydrolyzing) [Lactobacillus
           crispatus JV-V01]
 gi|256849742|ref|ZP_05555173.1| carbamoyl-phosphate synthase large subunit [Lactobacillus crispatus
           MV-1A-US]
 gi|227861466|gb|EEJ69082.1| carbamoyl-phosphate synthase (glutamine-hydrolyzing) [Lactobacillus
           crispatus JV-V01]
 gi|256713231|gb|EEU28221.1| carbamoyl-phosphate synthase large subunit [Lactobacillus crispatus
           MV-1A-US]
          Length = 1062

 Score = 82.5 bits (203), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 42/297 (14%), Positives = 96/297 (32%), Gaps = 38/297 (12%)

Query: 22  CASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ--- 69
           C  AL+  G++   I         D   S  L    L  +   NV      E  +VQ   
Sbjct: 577 CVKALQKMGYEAIVINSNPETVSTDFSISDKLYFEPLTLEDVLNVCDLEKPEGVIVQFGG 636

Query: 70  -------AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDS 120
                    LE   +    + +     + D+    Q++    +     +        +++
Sbjct: 637 QTSINLAHGLEEHGVKILGTKVADVNRAEDRELFDQIIKQLHLNQPQGLTATTHEGVLEA 696

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P +++P        + ++     +   L           +L++ Y+DG E    
Sbjct: 697 ADKLGYPVLVRPSYVLGGKAMEIVYTKAELEEYLQDHVDIAADHPILVDDYLDGRECDVD 756

Query: 181 VMGDAS---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQ 236
            + D     L      +  +  +S        +S  V P +    ++ +++  +      
Sbjct: 757 AISDGKEVLLPGIMEHIEHAGVHS-------GDSMAVYPPQTFSDEVKEKITDVTRKLAL 809

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            + C GI    F+      +V+ +E+N +   T     P ++   G    ++   ++
Sbjct: 810 TLNCVGIMNIQFIVR--DGEVYVIEVNPRASRT----VPFLSKITGIEMAQVATRVI 860



 Score = 73.6 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 49/289 (16%), Positives = 99/289 (34%), Gaps = 39/289 (13%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI---------DVD------------RSVGLV 45
           G ++E + S   G     AL + G++V  +         D               S+  +
Sbjct: 21  GQAAEFDYS---GTQACLALREEGYEVVLVNSNPATIMTDTTIADKVYIEPLTVESISRI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +    PD     L G  G +  ++     IL+ L I    + + +   + D+ + K++  
Sbjct: 78  IRQEYPDAILPTLGGQVGLNMAMELAKTGILDELHIELLGTKLQSIEQAEDREKFKELCK 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
           S G PV PS  VN     +     I  P +++P       G  +    + +         
Sbjct: 138 SLGEPVPPSKTVNTVEDALALGDEIGYPIIVRPAFTMGGTGGGICNNHEELAEIAKNGLE 197

Query: 160 WNHGDQLLIEQYVDG---IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216
            +   + LIE+ + G   +E       D +  +            +     + +S    P
Sbjct: 198 LSPVTECLIEKSIAGYKEVEFEVMRDHDDNAMIVCCMENFDPVGIH-----TGDSIVFSP 252

Query: 217 AK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           ++ +    Y+ ++  +    +A+   G        DP S     +E+N 
Sbjct: 253 SQTLSDKEYQMLRDCSLRLIRALKIEGGCNVQLALDPNSFNYDVIEVNP 301


>gi|169796337|ref|YP_001714130.1| putative biotin carboxylase [Acinetobacter baumannii AYE]
 gi|213156927|ref|YP_002318972.1| methylcrotonoyl-CoA carboxylase subunit alpha [Acinetobacter
           baumannii AB0057]
 gi|215483798|ref|YP_002326023.1| methylcrotonoyl-Coenzyme A carboxylase 1 (alpha) [Acinetobacter
           baumannii AB307-0294]
 gi|301511206|ref|ZP_07236443.1| methylcrotonoyl-Coenzyme A carboxylase 1 (alpha) [Acinetobacter
           baumannii AB058]
 gi|301595042|ref|ZP_07240050.1| methylcrotonoyl-Coenzyme A carboxylase 1 (alpha) [Acinetobacter
           baumannii AB059]
 gi|332852007|ref|ZP_08433874.1| putative acetyl-CoA carboxylase, biotin carboxylase subunit
           [Acinetobacter baumannii 6013150]
 gi|332871760|ref|ZP_08440200.1| putative acetyl-CoA carboxylase, biotin carboxylase subunit
           [Acinetobacter baumannii 6013113]
 gi|169149264|emb|CAM87147.1| conserved hypothetical protein; putative Biotin carboxylase
           [Acinetobacter baumannii AYE]
 gi|213056087|gb|ACJ40989.1| methylcrotonoyl-CoA carboxylase subunit alpha [Acinetobacter
           baumannii AB0057]
 gi|213987062|gb|ACJ57361.1| methylcrotonoyl-Coenzyme A carboxylase 1 (alpha) [Acinetobacter
           baumannii AB307-0294]
 gi|332729584|gb|EGJ60922.1| putative acetyl-CoA carboxylase, biotin carboxylase subunit
           [Acinetobacter baumannii 6013150]
 gi|332731230|gb|EGJ62528.1| putative acetyl-CoA carboxylase, biotin carboxylase subunit
           [Acinetobacter baumannii 6013113]
          Length = 663

 Score = 82.5 bits (203), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 79/221 (35%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       +   I +    + A      K  SK ++   GVP+ P    
Sbjct: 77  AVHPGYGFLSENDQFALACQQHNICFIGPPVDAILAMGLKATSKALMEKAGVPLTPGYHG 136

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
                D        I  P +IK   GG   G+ ++++ +     L     ++ S    D 
Sbjct: 137 TNQDADFLKQQADRIGYPVLIKASAGGGGKGMSLVERSEDFLHALASCKREAKSSFGNDD 196

Query: 166 LLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDI 223
           +LIE+Y +    +   V GD   +               ++          PA ++P + 
Sbjct: 197 VLIERYVIQPRHIEVQVFGDTHGNYV-----HLFERDCSVQRRHQKVLEEAPAPQMPSEK 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              +++ A  A +A+   G    +F+        +++E+N 
Sbjct: 252 LDAMRQAAIDAARAVNYVGAGTVEFIV-EQDGTAYFMEMNT 291


>gi|225163428|ref|ZP_03725745.1| acetyl-CoA carboxylase, biotin carboxylase [Opitutaceae bacterium
           TAV2]
 gi|224801970|gb|EEG20249.1| acetyl-CoA carboxylase, biotin carboxylase [Opitutaceae bacterium
           TAV2]
          Length = 454

 Score = 82.5 bits (203), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 74/220 (33%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+       E   I +      +  +  DK  +K  V    VP+ P    
Sbjct: 77  AIHPGYGFLSENAKFAEQCESCNIKFIGPKSKSIQMMGDKAVAKDTVRKAKVPIVPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD----QSIPLDLLQSSSWNHGDQ 165
            I      +     I  P +IK + GG   G+ +   D    +   +   ++        
Sbjct: 137 PIESEAEAIKLARKIGYPVIIKAVAGGGGRGMRIAHNDVSLGKEFNVARSEAEKAFGNGS 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+Y++    +   ++ D+   V  +            K             +   + 
Sbjct: 197 VYVEKYIEKPRHIEFQILADSHGKVVHLGERDCSVQRRHQK----LIEESPSPFLTPSLR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           KE+ R A  A +A         +FL D    K +++E+N 
Sbjct: 253 KEMGRHAVRAAEAASYENAGTIEFLVDAK-GKYYFIEMNT 291


>gi|255952849|ref|XP_002567177.1| Pc21g01060 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211588888|emb|CAP95003.1| Pc21g01060 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 708

 Score = 82.5 bits (203), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 55/287 (19%), Positives = 97/287 (33%), Gaps = 44/287 (15%)

Query: 13  EVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFN---------------- 56
           E++L  G+  A    + G +V+ +  D       A   P  AFN                
Sbjct: 48  EIALRVGRTAA----ERGIRVTTLYTDPDSRAQHALSSP-FAFNLGSVSAYLDGDRIIEI 102

Query: 57  -------VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP 106
                   +H  +G   E+           + +      A     DK RSK+++++ GVP
Sbjct: 103 AKKEGCQAIHPGYGFLSENSAFAQKCTEAGLVFIGPPYKAIEDMGDKSRSKEIMTAAGVP 162

Query: 107 VCPSILVNRFT----MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
             P             +    I+ P +IK +KGG   G+ +          L  + S   
Sbjct: 163 CVPGYHGKNQDPTFLEEQADRITYPVLIKAVKGGGGKGMRIASSKAVFQAQLESAKSEAM 222

Query: 163 ----GDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
                D +L+E+Y+     +   V  D   +   +            K            
Sbjct: 223 SSFGDDNVLVEKYITTPRHIEVQVFADKHGNSVALGERDCSIQRRHQKVL----EESPAP 278

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +P    K++   A  A +A+G  G    +F+FD  S   +++E+N 
Sbjct: 279 HLPDATRKDLWAKARAAAEAVGYEGAGTVEFIFDNDSGDFYFMEMNT 325


>gi|126641419|ref|YP_001084403.1| putative acyl-CoA carboxylase alpha chain protein [Acinetobacter
           baumannii ATCC 17978]
 gi|126387303|gb|ABO11801.1| putative acyl-CoA carboxylase alpha chain protein [Acinetobacter
           baumannii ATCC 17978]
          Length = 663

 Score = 82.5 bits (203), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 79/221 (35%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       +   I +    + A      K  SK ++   GVP+ P    
Sbjct: 77  AVHPGYGFLSENDQFALACQQHNICFIGPPVDAILAMGLKATSKALMEKAGVPLTPGYHG 136

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
                D        I  P +IK   GG   G+ ++++ +     L     ++ S    D 
Sbjct: 137 TNQDADFLKQQADRIGYPVLIKASAGGGGKGMSLVERSEDFLHALASCKREAKSSFGNDD 196

Query: 166 LLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDI 223
           +LIE+Y +    +   V GD   +               ++          PA ++P + 
Sbjct: 197 VLIERYVIQPRHIEVQVFGDTHGNYV-----HLFERDCSVQRRHQKVLEEAPAPQMPSEK 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              +++ A  A +A+   G    +F+        +++E+N 
Sbjct: 252 LDAMRQAAIDAARAVNYVGAGTVEFIV-EQDGTAYFMEMNT 291


>gi|294501205|ref|YP_003564905.1| acetyl-CoA carboxylase, biotin carboxylase [Bacillus megaterium QM
           B1551]
 gi|294351142|gb|ADE71471.1| acetyl-CoA carboxylase, biotin carboxylase [Bacillus megaterium QM
           B1551]
          Length = 450

 Score = 82.5 bits (203), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 78/221 (35%), Gaps = 18/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     +     + +      A      K  +++ +   GVP+ P    
Sbjct: 77  AIHPGYGFLAENADFAELCRECNVTFVGPSPEAINKMGTKDVARETMREAGVPIVPGSTG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-----SSSWNHGD 164
            +      M   + I  P +IK   GG   GI V K +Q +   +       ++++    
Sbjct: 137 IVESVEDGMSIANDIGYPVIIKATAGGGGKGIRVAKNEQELIKGIAITQQEAATAFG-NP 195

Query: 165 QLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            + IE++++    +   V+ D+  +   +            K             +    
Sbjct: 196 GVYIEKFIEDFRHVEIQVLADSHGNTVHLGERDCSIQRRLQKLI----EETPSPALDEKT 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +   A  A QA+   G    +F++D    K +++E+N 
Sbjct: 252 RELMGDAAVKAAQAVNYTGAGTVEFIYDYRENKFYFMEMNT 292


>gi|229591813|ref|YP_002873932.1| putative acetyl-/propionyl-coenzyme A carboxylase alpha chain
           protein [Pseudomonas fluorescens SBW25]
 gi|229363679|emb|CAY51041.1| putative acetyl-/propionyl-coenzyme A carboxylase alpha chain
           protein [Pseudomonas fluorescens SBW25]
          Length = 627

 Score = 82.5 bits (203), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 73/221 (33%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       +   + +    + A  L   K  SK  +   GVP       
Sbjct: 79  AIHPGYGFLSENPDFARACQHANLTFIGPSVAAIELMGSKRLSKLAMLDAGVPCIAGYQG 138

Query: 114 NRFT----MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS-----SWNHGD 164
           +             I  P +IK   GG   G+ ++   + +  +L  +      ++   +
Sbjct: 139 SAQDDVTLQQEAERIGYPLMIKASAGGGGRGMRLVHHAKDLLNNLQTARSEAKNAFGSDE 198

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDI 223
            +L    +D   +   + GD+   +  +            K          P  I   ++
Sbjct: 199 LILEHALIDPRHVEIQLFGDSHGHLIYLGERDCSIQRRHQK-----VIEEAPCPIMTPEL 253

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              +   A  A +A+   G    +FL D    + ++LE+N 
Sbjct: 254 RLAMGEAALKAGRAVNYVGAGTVEFLLDRH-GQFYFLEMNT 293


>gi|227891888|ref|ZP_04009693.1| carbamoyl phosphate synthase large subunit [Lactobacillus
           salivarius ATCC 11741]
 gi|227866351|gb|EEJ73772.1| carbamoyl phosphate synthase large subunit [Lactobacillus
           salivarius ATCC 11741]
          Length = 1076

 Score = 82.5 bits (203), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 35/232 (15%), Positives = 86/232 (37%), Gaps = 19/232 (8%)

Query: 68  VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV--PVCPSILVNRFTMDSQHLIS 125
           + A LE   +    + +     + D+    Q + + G+  P+  +  +    +     I 
Sbjct: 657 LAAGLEAHGVKILGTTVEDLDRAEDRELFDQTIKNLGLKQPIGKTATIQEQVIACAEEIG 716

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            P +++P        + ++  +Q +   L Q++       +L++ Y+ G+E     + D 
Sbjct: 717 YPVLVRPSYVLGGRAMEIVNNEQELLDYLAQNAPAEIDHPILVDAYLSGLECEVDAICDG 776

Query: 186 S---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCR 241
               L      +  +  +S        +S  V P +    +I +++         A+ C 
Sbjct: 777 KDVLLPGIMEHIEHAGVHS-------GDSMAVYPPQSFDENIKQQIVDATEKLAVALKCV 829

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           GI    F+    + + + LE+N +   T     P ++   G    ++   ++
Sbjct: 830 GIMNIQFIIH--NNEAYVLEVNPRASRT----VPFLSKITGIEMAQVATRVI 875



 Score = 82.1 bits (202), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 58/314 (18%), Positives = 112/314 (35%), Gaps = 37/314 (11%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI---------DVD------------RSVGLV 45
           G ++E + S   G     AL + G++V  +         D +             SV  +
Sbjct: 36  GQAAEFDYS---GTQACLALREEGYEVVLVNSNPATIMTDTEIADKVYIEPLTVESVSRI 92

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +    PD     L G  G +  +      ILE L I    + + A   + D+ R K ++ 
Sbjct: 93  IRQEFPDAILPTLGGQIGLNLAIALAKTGILEELGIKLLGTQLDAIDQAEDRQRFKDLMQ 152

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
               PV  S  V   +  +D    I  P +++P       G  +    + +   +     
Sbjct: 153 ELNEPVPDSKTVETVQEALDFAAEIGYPVIVRPAFTMGGTGGGLCDNPEQLKEIVANGLE 212

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   Q LIE+ + G  E+   VM DA  +   + V   + +     ++  +        
Sbjct: 213 LSPATQCLIEKSIMGYKEIEFEVMRDADNNA--MVVCSMENFDPVGIHTGDSIVFAPTQT 270

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278
           +    Y+ ++  +    +A+   G        DP S + + +E+N  P ++  S     +
Sbjct: 271 LSDREYQMLRNCSLKLIRALKIEGGCNVQLALDPNSYRYYVIEVN--PRVSRSS--ALAS 326

Query: 279 AYAGYSFRELLLWM 292
              GY   +L   +
Sbjct: 327 KATGYPIAKLAAKI 340


>gi|224476306|ref|YP_002633912.1| carbamoyl phosphate synthase large subunit [Staphylococcus carnosus
           subsp. carnosus TM300]
 gi|254813602|sp|B9DPN2|CARB_STACT RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|222420913|emb|CAL27727.1| carbamoyl-phosphate synthase, large chain [Staphylococcus carnosus
           subsp. carnosus TM300]
          Length = 1057

 Score = 82.5 bits (203), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 52/297 (17%), Positives = 113/297 (38%), Gaps = 36/297 (12%)

Query: 25  ALEDAGFKVSQID---------------------VDRSVGLVLAHLKPDLAFNVLHGNFG 63
           AL++ G+KV  ++                         +  ++   +PD     L G  G
Sbjct: 36  ALKEEGYKVILVNSNPATIMTDKEIADKVYIEPLTHDFIARIIRKEQPDALLPTLGGQTG 95

Query: 64  EDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFT 117
            +  +Q     +LE   +    + + +   + D+   + +++   VPV  S +VN     
Sbjct: 96  LNMAIQLHDSGVLESNNVQLLGTKLSSIQQAEDRELFRSLMNELDVPVPESDIVNTVEQA 155

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IE 176
              +  +  P +++P       G  +   D+ +   +     ++   Q LIE+ + G  E
Sbjct: 156 FAFKEQVGYPLIVRPAFTMGGTGGGICHNDEELKEVVTNGLHYSPATQCLIEKSIAGFKE 215

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAH 235
           +   VM D + +   I V   +     +   + +S  V P++ +    Y+ ++ ++    
Sbjct: 216 IEYEVMRDKNDNA--IVVCNMENID-PVGIHTGDSVVVAPSQTLTDVEYQMLRDVSLKVI 272

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +A+G  G        DP S   + +E+N  P ++  S     +   GY   +L   +
Sbjct: 273 RALGIEGGCNVQLALDPHSMNYYIIEVN--PRVSRSS--ALASKATGYPIAKLAAKI 325



 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 25/210 (11%), Positives = 73/210 (34%), Gaps = 14/210 (6%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPL 133
            +    + +     + D+   + +++   VP             +++   I  P V++P 
Sbjct: 650 GVQILGTSLENLNRAEDRKEFEALLNKIDVPQPKGKTATSPEEALENAREIGYPVVVRPS 709

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
                  + ++  D  +   + ++   +    +L+++Y+ G E+    + D    +    
Sbjct: 710 YVLGGRAMEIVYNDAELGNYIREAVKASPEHPVLVDRYLTGKEIEVDAICDGDTVIIPGI 769

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
           +   +           +S  V P + +  +  K ++       + +   G+    F+   
Sbjct: 770 MEHIERAGVHS----GDSIAVYPPQTLSEEDIKTLESYTTKLAKGLDIIGLINIQFVLAH 825

Query: 253 LSRKVFWLEIN-----VQPGMTPVSIFPEM 277
               V+ LE+N       P ++ ++  P  
Sbjct: 826 DG--VYVLEVNPRSSRTVPFLSKITNIPMA 853


>gi|94984574|ref|YP_603938.1| acetyl-CoA carboxylase, biotin carboxylase [Deinococcus
           geothermalis DSM 11300]
 gi|94554855|gb|ABF44769.1| acetyl-CoA carboxylase, biotin carboxylase [Deinococcus
           geothermalis DSM 11300]
          Length = 445

 Score = 82.5 bits (203), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 38/219 (17%), Positives = 75/219 (34%), Gaps = 17/219 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+     +     + +      +      K   + + +   VPV P   V
Sbjct: 77  AIHPGYGFLAENPNFAEMCREHGLVFIGPTPESMHALGSKAGGRAIAAQSNVPVVPGTGV 136

Query: 114 NRF---TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL--LQSSSWNH--GDQL 166
                  + +   I  P ++K   GG   G  V++  + +       Q  +  +     +
Sbjct: 137 LEDVDAALLAAKQIGYPVLLKASAGGGGRGQKVVRTQEELRSAFGQAQEEARLYFGDPAI 196

Query: 167 LIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
           ++E++++    +   VMGD    V  I            K     +   LP  +  +I  
Sbjct: 197 IMEKFLEEFRHVEVQVMGDGQGHVIHIGERDCSIQRRNQK-LIEEAPSTLPESLRQEILA 255

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              RLA   H A    G    +F+ D      +++E+N 
Sbjct: 256 AGVRLAKHVHYA----GAGTLEFIVD-RDGNYYFMEMNT 289


>gi|228476268|ref|ZP_04060970.1| pyruvate carboxylase [Staphylococcus hominis SK119]
 gi|228269671|gb|EEK11173.1| pyruvate carboxylase [Staphylococcus hominis SK119]
          Length = 1149

 Score = 82.5 bits (203), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 34/221 (15%), Positives = 79/221 (35%), Gaps = 20/221 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+           I +    +    +  DK++++       +PV P    
Sbjct: 80  AIHPGYGFLSENEEFARRCNEEGITFIGPHLDHLDMFGDKVKARTTAIKANLPVIPGTDG 139

Query: 114 NRFTMDSQHLI----SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
                D+          P +IK   GG   G+ +++++  +     ++ S         +
Sbjct: 140 PIENFDAAKAFAKEAGFPLMIKATSGGGGKGMRIVREESELEDAFHRAKSEAQKSFGNSE 199

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDI 223
           + IE+Y+D    +   V+GD   ++  +           ++        V P   +P ++
Sbjct: 200 VYIERYIDNPKHIEVQVIGDEYGNIVHLYE-----RDCSVQRRHQKVVEVAPSVGLPDEL 254

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + + + A    + I        +FL      + F++E+N 
Sbjct: 255 RERICQSALQLMKNIKYVNAGTVEFLV--SGDEFFFIEVNP 293


>gi|192289987|ref|YP_001990592.1| urea carboxylase [Rhodopseudomonas palustris TIE-1]
 gi|192283736|gb|ACF00117.1| urea carboxylase [Rhodopseudomonas palustris TIE-1]
          Length = 1182

 Score = 82.5 bits (203), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 33/220 (15%), Positives = 82/220 (37%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      L+   I +             K R++++  +  VP+ P   +
Sbjct: 77  AVHPGYGFLSENRGFAERLKQHGIAFIGPRPDHLEAFGLKHRARELAQASNVPLLPGTGL 136

Query: 114 N---RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ----SSSWNHGDQL 166
                  +++   I  P ++K   GG  +G+ +   + ++          + +     ++
Sbjct: 137 IDSIEEALEAAGRIRFPLMLKSTAGGGGIGMQLCHDEATLRERFATVQRTARASFGDARV 196

Query: 167 LIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIY 224
            +E++V D   +   + GD   +V  +           L+  +       PA  I  ++ 
Sbjct: 197 YLERFVADARHIEVQIFGDGQGNVIALGE-----RDCSLQRRNQKVVEETPAPGISDEMR 251

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             + + A    Q++        +F++D    + ++LE+N 
Sbjct: 252 ARLHQAAVALGQSVAYESAGTVEFIYDVARDEFYFLEVNT 291


>gi|70731298|ref|YP_261039.1| biotin carboxylase/biotin-containing subunit [Pseudomonas
           fluorescens Pf-5]
 gi|68345597|gb|AAY93203.1| biotin carboxylase/biotin-containing subunit [Pseudomonas
           fluorescens Pf-5]
          Length = 648

 Score = 82.5 bits (203), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 41/220 (18%), Positives = 78/220 (35%), Gaps = 19/220 (8%)

Query: 58  LHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
           +H  +G   E+      +E   + +      A      K  +K ++ + GVP+ P     
Sbjct: 82  IHPGYGFLSENAGFARAIEAAGLIFLGPPAAAIDAMGSKSAAKALMETAGVPLVPGYHGE 141

Query: 115 RFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQL 166
              ++    +   I  P ++K   GG   G+ V++    +   L  +           ++
Sbjct: 142 AQDLETFRNAAERIGYPVLLKATAGGGGKGMKVVEDVSQLAEALASAQREAQSSFGDSRM 201

Query: 167 LIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIY 224
           L+E+Y +    +   V  D   +   +            K          PA  +   + 
Sbjct: 202 LVEKYLLKPRHVEIQVFADQHGNCLYLNERDCSIQRRHQK-----VVEEAPAPGLSPQLR 256

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K +   A  A QAIG  G    +FL D    + F++E+N 
Sbjct: 257 KAMGEAAVRAAQAIGYVGAGTVEFLLDAR-GEFFFMEMNT 295


>gi|239631597|ref|ZP_04674628.1| pyruvate carboxylase [Lactobacillus paracasei subsp. paracasei
           8700:2]
 gi|239526062|gb|EEQ65063.1| pyruvate carboxylase [Lactobacillus paracasei subsp. paracasei
           8700:2]
          Length = 1145

 Score = 82.5 bits (203), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 33/245 (13%), Positives = 82/245 (33%), Gaps = 25/245 (10%)

Query: 33  VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASAL 89
            + +D+D  +  +      D     +H  +G   E+      +    + +         +
Sbjct: 58  AAYLDMD-DIIRIAKQSGAD----AIHPGYGLLSENAEFARKVRAAGLIFVGPRSELLDI 112

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFT----MDSQHLISPPYVIKPLKGGSSLGIIVIK 145
             DK+ +K+     G+   P             D       P ++K   GG   G+ ++ 
Sbjct: 113 FGDKVAAKEAAHKAGLATIPGTPEPTRDFSEIQDFTATHGFPVMLKAASGGGGKGMRIVH 172

Query: 146 KDQSIPL----DLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFY 200
            +  +       + ++ +    D++ +E+Y+     +   V+GD    +           
Sbjct: 173 SEAELEAVYQNAVNEAKASFGDDRMYVEKYIASAKHIEVQVLGDEHGHLL-----HLFER 227

Query: 201 SYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
              ++        + PA  +P  +   + + A    Q +        +FL D    + ++
Sbjct: 228 DCSVQRRQQKVVEIAPAVALPTALRARICQSAVDLMQGLHYENAGTVEFLVD--GDQYYF 285

Query: 260 LEINV 264
           +E+N 
Sbjct: 286 IEVNP 290


>gi|311739925|ref|ZP_07713759.1| pyruvate carboxylase [Corynebacterium pseudogenitalium ATCC 33035]
 gi|311304998|gb|EFQ81067.1| pyruvate carboxylase [Corynebacterium pseudogenitalium ATCC 33035]
          Length = 1143

 Score = 82.5 bits (203), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 36/240 (15%), Positives = 78/240 (32%), Gaps = 19/240 (7%)

Query: 35  QIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKM 94
            +D+D  +       + D  +   +G   E   +    E   I +         L+ DK 
Sbjct: 68  YLDIDE-IIRAAKKAEADAIYPG-YGFLSERADLARACEDNGIKFIGPTPSTLDLTGDKA 125

Query: 95  RSKQVVSSCGVPVC----PSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150
            +       G+P      PS  V++  ++     + P  +K + GG   G+  ++ +  +
Sbjct: 126 AAVSAAKEAGLPTLQDSEPSTDVDKL-VEYSKDFNFPVFVKAVAGGGGRGMRFVESEDQL 184

Query: 151 -----PLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205
                       +++  G   L    +    +   ++ D+  +V              ++
Sbjct: 185 REKAAEASREAEAAFGDGSVYLETAVIKPQHIEVQILADSQGNVI-----HLFERDCSVQ 239

Query: 206 YSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
                   + PA  +  ++   +   A    + I   G    +FL D     VF  E+N 
Sbjct: 240 RRHQKVVEIAPAPTLDPELRDRICADAVKFCEHINYEGAGTVEFLVDERGNHVFI-EMNP 298


>gi|118465868|ref|YP_880903.1| acetyl-/propionyl-coenzyme A carboxylase alpha chain [Mycobacterium
           avium 104]
 gi|118167155|gb|ABK68052.1| acetyl-/propionyl-coenzyme A carboxylase alpha chain [Mycobacterium
           avium 104]
          Length = 671

 Score = 82.5 bits (203), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 81/221 (36%), Gaps = 17/221 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+    A  E   + +      A  +  DK+ +K  V+   VPV P +  
Sbjct: 77  AIHPGYGFLSENADFAAACERAGVVFLGPPARAIQVMGDKITAKNAVAEFDVPVVPGVAE 136

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
                D    +   I  P +IKP  GG   G+ ++++   +   L+    +++S    D 
Sbjct: 137 PGLGDDELVAAADEIGYPVLIKPSAGGGGKGMRLVEEPGRLREALVGARREAASSFGDDT 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           L +E++V     +   ++ D   +V  +   +        K             +  +  
Sbjct: 197 LFLERFVLRPRHIEVQILADTHGNVVHLGERECSLQRRHQK----VIEEAPSPLLDPETR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLS-RKVFWLEINV 264
             +   A    +++   G    +F+       + F++E+N 
Sbjct: 253 ARIGAAACNTARSVDYVGAGTVEFIVSADRPDEFFFMEMNT 293


>gi|56697627|ref|YP_167996.1| methylcrotonyl-CoA carboxylase, alpha subunit [Ruegeria pomeroyi
           DSS-3]
 gi|56679364|gb|AAV96030.1| methylcrotonyl-CoA carboxylase, alpha subunit [Ruegeria pomeroyi
           DSS-3]
          Length = 645

 Score = 82.5 bits (203), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 85/225 (37%), Gaps = 23/225 (10%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      +E   + +      A      K  +K ++   GVPV P    
Sbjct: 77  AIHPGYGFLSENPGFVDAVEAAGLTFIGPSASAIRAMGLKDAAKALMHEAGVPVVPGYHG 136

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
           +    +    +   I  P +IK + GG   G+ ++++ Q     L     ++S+    D 
Sbjct: 137 DNQDPEHLAGAADTIGYPVLIKAVAGGGGKGMRLVERPQDFAAALDSARGEASTAFGNDA 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           +L+E++V     +   V GD +  V              L+          PA  +  ++
Sbjct: 197 VLVEKFVSKPRHIEVQVFGDGTHAV------HLFERDCSLQRRHQKVIEEAPAPGMTEEM 250

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR----KVFWLEINV 264
              + +    A +AIG +G    +F+ D        + +++E+N 
Sbjct: 251 RAAMGQAGVRAAEAIGYKGAGTVEFIVDASDGLRADRFWFMEMNT 295


>gi|322391065|ref|ZP_08064568.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus
           parasanguinis ATCC 903]
 gi|321142226|gb|EFX37701.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus
           parasanguinis ATCC 903]
          Length = 462

 Score = 82.5 bits (203), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 78/220 (35%), Gaps = 16/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  FG   E+     + E + I +         L  DK+ +++ +   GVPV P    
Sbjct: 85  AIHPGFGFLSENSKFATMCEEVGIKFIGPSAKVMDLMGDKINARKQMIKAGVPVIPGSDG 144

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
            +      ++    I  P ++K   GG   GI  ++K + +         ++ +      
Sbjct: 145 EVYTAEEALEIAERIGYPVMLKASAGGGGKGIRKVEKPEDLVAAFESASSEAQAAFGNGA 204

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+ +     +   ++ D    V  +            K             I   + 
Sbjct: 205 MYMERVIYPARHIEVQILADQHGHVIHLGERDCSLQRNNQKVL----EESPSIAIGKTLR 260

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            ++   A  A +++G       +FL+D    + +++E+N 
Sbjct: 261 NQIGSAAVRAAESVGYENAGTIEFLYDEGKGEFYFMEMNT 300


>gi|301066369|ref|YP_003788392.1| pyruvate carboxylase [Lactobacillus casei str. Zhang]
 gi|300438776|gb|ADK18542.1| Pyruvate carboxylase [Lactobacillus casei str. Zhang]
          Length = 1145

 Score = 82.5 bits (203), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 33/245 (13%), Positives = 82/245 (33%), Gaps = 25/245 (10%)

Query: 33  VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASAL 89
            + +D+D  +  +      D     +H  +G   E+      +    + +         +
Sbjct: 58  AAYLDMD-DIIRIAKQSGAD----AIHPGYGLLSENAEFARKVRAAGLIFVGPRSELLDI 112

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFT----MDSQHLISPPYVIKPLKGGSSLGIIVIK 145
             DK+ +K+     G+   P             D       P ++K   GG   G+ ++ 
Sbjct: 113 FGDKVAAKEAAHKAGLATIPGTPEPTRDFSEIQDFTATHGFPVMLKAASGGGGKGMRIVH 172

Query: 146 KDQSIPL----DLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFY 200
            +  +       + ++ +    D++ +E+Y+     +   V+GD    +           
Sbjct: 173 SEAELEAVYQNAVNEAKASFGDDRMYVEKYIASAKHIEVQVLGDEHGHLL-----HLFER 227

Query: 201 SYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
              ++        + PA  +P  +   + + A    Q +        +FL D    + ++
Sbjct: 228 DCSVQRRQQKVVEIAPAVALPTALRARICQSAVDLMQGLHYENAGTVEFLVD--GDQYYF 285

Query: 260 LEINV 264
           +E+N 
Sbjct: 286 IEVNP 290


>gi|291444869|ref|ZP_06584259.1| acetyl/propionyl CoA carboxylase alpha subunit [Streptomyces
           roseosporus NRRL 15998]
 gi|291347816|gb|EFE74720.1| acetyl/propionyl CoA carboxylase alpha subunit [Streptomyces
           roseosporus NRRL 15998]
          Length = 674

 Score = 82.5 bits (203), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 85/221 (38%), Gaps = 17/221 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---- 109
            +H  +G   E+           + +      A AL  DK+R+K+ V++ GVPV P    
Sbjct: 102 AVHPGYGFLAENAEFAQACADAGLVFIGPPAAAIALMGDKIRAKETVAAYGVPVVPGSSG 161

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
           S L +    ++   I  P ++KP  GG   G+ +++    +  ++  +          D 
Sbjct: 162 SGLTDAQLEEAAREIGTPVLLKPSAGGGGKGMRLVRDAAVLGEEIAAARREARASFGDDT 221

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           LL+E+++D    +   V+ DA  +V  +   +        K             +  +  
Sbjct: 222 LLVERWIDRPRHIEIQVLADAHGNVIHLGERECSLQRRHQKII----EEAPSVLLDEETR 277

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLS-RKVFWLEINV 264
             +   A  A ++ G  G    +F+         +++E+N 
Sbjct: 278 AAMGEAAVQAARSCGYVGAGTVEFIVPGNDPASYYFMEMNT 318


>gi|260555406|ref|ZP_05827627.1| urea carboxylase [Acinetobacter baumannii ATCC 19606]
 gi|260411948|gb|EEX05245.1| urea carboxylase [Acinetobacter baumannii ATCC 19606]
          Length = 663

 Score = 82.5 bits (203), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 79/221 (35%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       +   I +    + A      K  SK ++   GVP+ P    
Sbjct: 77  AVHPGYGFLSENDQFALACQQHNICFIGPPVDAILAMGLKATSKALMEKAGVPLTPGYHG 136

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
                D        I  P +IK   GG   G+ ++++ +     L     ++ S    D 
Sbjct: 137 TNQDADFLKQQADRIGYPVLIKASAGGGGKGMSLVERSEDFLHALASCKREAKSSFGNDD 196

Query: 166 LLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDI 223
           +LIE+Y +    +   V GD   +               ++          PA ++P + 
Sbjct: 197 VLIERYVIQPRHIEVQVFGDTHGNYV-----HLFERDCSVQRRHQKVLEEAPAPQMPSEK 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              +++ A  A +A+   G    +F+        +++E+N 
Sbjct: 252 LDAMRQAAIDAARAVNYVGAGTVEFIV-EQDGTAYFMEMNT 291


>gi|114799012|ref|YP_759780.1| carbamoyl-phosphate synthase L chain/biotin carboxylase [Hyphomonas
           neptunium ATCC 15444]
 gi|114739186|gb|ABI77311.1| carbamoyl-phosphate synthase L chain/biotin carboxylase [Hyphomonas
           neptunium ATCC 15444]
          Length = 668

 Score = 82.5 bits (203), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 80/220 (36%), Gaps = 16/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  FG   E+      LE   I +      A     DK+ SK++ +  GV   P    
Sbjct: 77  AIHPGFGFLSENAGFAKRLEKEGIGWIGPNAHAIDAMGDKISSKKLAAEAGVSTVPGHMD 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGDQ 165
            I   +  ++    I  P +IK   GG   GI V   D+ +         ++++    D+
Sbjct: 137 LIKDTKHAVEISREIGYPVMIKASAGGGGKGIRVAANDKEVEEGFPAVKAEATASFGDDR 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+++ +   +   V+GD   +   +   +        K             +  +  
Sbjct: 197 IFIEKFILEPRHIEIQVLGDKHGNCIYLNERECSIQRRNQK----VIEEAPSPLLDAETR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K++   A    +A+        +F+     +  ++LE+N 
Sbjct: 253 KKMGEQAVALAKAVNYDSAGTVEFVASGKDKGFYFLEMNT 292


>gi|145592591|ref|YP_001156888.1| carbamoyl-phosphate synthase L chain, ATP-binding [Salinispora
           tropica CNB-440]
 gi|145301928|gb|ABP52510.1| Carbamoyl-phosphate synthase L chain, ATP-binding [Salinispora
           tropica CNB-440]
          Length = 445

 Score = 82.5 bits (203), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 43/237 (18%), Positives = 90/237 (37%), Gaps = 17/237 (7%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRS 96
           R+V  VLA  K       +H  +G   E+      +    + +   G  A     DK+ +
Sbjct: 61  RNVEAVLAAAKSTGV-QAIHPGYGFLSENADFAQAVAASGLLWVGPGPDAITAMGDKINA 119

Query: 97  KQVVSSCGVPVCPSILVNRFTM----DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152
           + ++++ GVPV P        +    ++   I  P ++K   GG  +G+ +   + ++  
Sbjct: 120 RNLMAAAGVPVAPGTTEPAADLTAAVEAASEIGYPVMVKAAAGGGGMGMGIANDEAALRT 179

Query: 153 DLLQSSSWNH----GDQLLIEQ-YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYS 207
           +  +  ++         +LIE+ +     +   ++G A   V  +   +        K  
Sbjct: 180 EYDKVRAFAERMFGDGSVLIERYFPRVRHVEVQILGLADGRVVALGERECSVQRRNQK-- 237

Query: 208 SLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
                      +  ++       A  A +A+G R     + L DP + + F+LE+N 
Sbjct: 238 --LVEESPSPAVTPELRSRFLAAAVRAGEAVGYRNAGTVECLLDPTTGEFFFLEMNT 292


>gi|294651512|ref|ZP_06728824.1| acetyl-CoA carboxylase subunit A [Acinetobacter haemolyticus ATCC
           19194]
 gi|292822600|gb|EFF81491.1| acetyl-CoA carboxylase subunit A [Acinetobacter haemolyticus ATCC
           19194]
          Length = 649

 Score = 82.5 bits (203), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 75/220 (34%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+           I +      A  L   K  SK  +   GVP  P    
Sbjct: 79  AVHPGYGFLSENTDFAQACNDHGITFIGPNAAAIHLMGSKRLSKIAMIEAGVPCVPGYEG 138

Query: 114 NRFTM----DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS-----SWNHGD 164
           +R  +    +    I  P ++K   GG   G+ ++ +   +   L  +      ++  G+
Sbjct: 139 DRQDIEYLAEQAEKIGFPLMVKASAGGGGRGMRLVHQSTDLLEALKTARSEAENAFGSGE 198

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
            ++ +  +    +   V GD   +   +            K             +  ++ 
Sbjct: 199 LIIEKAVIAPRHVEIQVFGDTHGNYVYLFERDCSIQRRHQK----VVEEAPCPVMTPELR 254

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +++   A  A +A    G    +FL D  S + ++LE+N 
Sbjct: 255 QQMGEAAVAAAKACDYIGAGTVEFLLD-QSGEFYFLEMNT 293


>gi|238019470|ref|ZP_04599896.1| hypothetical protein VEIDISOL_01339 [Veillonella dispar ATCC 17748]
 gi|237864169|gb|EEP65459.1| hypothetical protein VEIDISOL_01339 [Veillonella dispar ATCC 17748]
          Length = 1148

 Score = 82.5 bits (203), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 97/278 (34%), Gaps = 28/278 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59
           +A+     S E  +SL   +A  + L   G K  +  +D   +  +      D     +H
Sbjct: 31  VAI----YSKEDTLSLHRNQADEAYLVGEGKKPVEAYLDIEDIIRIAKEHDID----AIH 82

Query: 60  GNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI--LVN 114
             +G   E+           I +    +    +  DK+ ++       +P+ P     + 
Sbjct: 83  PGYGFLSENEEFARRCGEEGIIFIGPHVEHLNMFGDKVNARAQAKLADIPMIPGSDGALR 142

Query: 115 RFTM--DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQLLI 168
            F    +  +    P +IK + GG   G+  + + + +         ++ +    D + +
Sbjct: 143 DFEQLEEFANTHGFPLMIKAVNGGGGRGMREVHRKEDLRDAYDRAKSEAKAAFGDDDVYV 202

Query: 169 EQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKE 226
           E+ + +   +   ++GD   +V              ++        + PA  +PL+  K 
Sbjct: 203 EKLIVEPKHIEVQILGDEHGNVV-----HLHERDCSVQRRHQKVVEMAPAFALPLETRKA 257

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           V   A    + +G       +FL        +++E+N 
Sbjct: 258 VCDAAVKIMKNVGYVNAGTVEFLVTA-DGSFYFIEVNP 294


>gi|227535196|ref|ZP_03965245.1| pyruvate carboxylase [Lactobacillus paracasei subsp. paracasei ATCC
           25302]
 gi|227187241|gb|EEI67308.1| pyruvate carboxylase [Lactobacillus paracasei subsp. paracasei ATCC
           25302]
          Length = 1145

 Score = 82.5 bits (203), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 33/245 (13%), Positives = 82/245 (33%), Gaps = 25/245 (10%)

Query: 33  VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASAL 89
            + +D+D  +  +      D     +H  +G   E+      +    + +         +
Sbjct: 58  AAYLDMD-DIIRIAKQSGAD----AIHPGYGLLSENAEFARKVRAAGLIFVGPRSELLDI 112

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFT----MDSQHLISPPYVIKPLKGGSSLGIIVIK 145
             DK+ +K+     G+   P             D       P ++K   GG   G+ ++ 
Sbjct: 113 FGDKVAAKEAAHKAGLATIPGTPEPTRDFSEIQDFTATHGFPVMLKAASGGGGKGMRIVH 172

Query: 146 KDQSIPL----DLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFY 200
            +  +       + ++ +    D++ +E+Y+     +   V+GD    +           
Sbjct: 173 SEAELEAVYQNAVNEAKASFGDDRMYVEKYIASAKHIEVQVLGDEHGHLL-----HLFER 227

Query: 201 SYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
              ++        + PA  +P  +   + + A    Q +        +FL D    + ++
Sbjct: 228 DCSVQRRQQKVVEIAPAVALPTALRARICQSAVDLMQGLHYENAGTVEFLVD--GDQYYF 285

Query: 260 LEINV 264
           +E+N 
Sbjct: 286 IEVNP 290


>gi|326562603|gb|EGE12914.1| biotin carboxylase [Moraxella catarrhalis 46P47B1]
          Length = 447

 Score = 82.5 bits (203), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 37/219 (16%), Positives = 80/219 (36%), Gaps = 19/219 (8%)

Query: 58  LHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---SI 111
           +H  +G   E+      +E   + +         L  +K+ +   +   GVP  P     
Sbjct: 78  IHPGYGFLSENAEFAERVEEAGLTFVGPHPEHIRLMGNKVSAINAMKEAGVPTVPGSIGA 137

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGDQLL 167
           +      +    I  P ++K   GG   G+ V+++ + +         ++ +    D + 
Sbjct: 138 ITLGNAEEQAREIGFPLIVKAAAGGGGRGMRVVERFEELLIQVQAAKTEAQNAFGDDTVY 197

Query: 168 IEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYK 225
           +E+++     +   V+GD   +               L+          PA  IP ++  
Sbjct: 198 MERFLKNPRHVEVQVLGDGDGNAL-----HLFDRDCSLQRRHQKVLEEAPAPDIPDEVRT 252

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +      A + IG RG    +FL+   + + F++E+N 
Sbjct: 253 PILEACVHACKKIGYRGAGTFEFLY--ENGEFFFIEMNT 289


>gi|306840347|ref|ZP_07473118.1| propionyl-CoA carboxylase, alpha subunit [Brucella sp. BO2]
 gi|306289694|gb|EFM60886.1| propionyl-CoA carboxylase, alpha subunit [Brucella sp. BO2]
          Length = 644

 Score = 82.5 bits (203), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 45/240 (18%), Positives = 84/240 (35%), Gaps = 16/240 (6%)

Query: 34  SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDK 93
           S I +D+ +   +     D      +G   E+      L+   + +    + A     DK
Sbjct: 36  SYIVIDK-ILAAIKETGADAVHPG-YGFLSENPRFAEALKAANVTFIGPPVNAIDAMGDK 93

Query: 94  MRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQS 149
           + SK++ +  GV   P  +      D        I  P +IK   GG   G+ +   D  
Sbjct: 94  ITSKKLAAEAGVSTVPGHMGLIEDADEAVRIAGSIGYPVMIKASAGGGGKGMRIAWNDDE 153

Query: 150 ----IPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYEL 204
                 L   ++ S    D++ IE++V     +   V+GD   +V  +   +        
Sbjct: 154 AREGFQLSRNEAKSSFGDDRIFIEKFVTQPRHIEIQVLGDQHGNVVYLGERECSIQRRNQ 213

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K             +     K +   A    +A+G       +F+ D  +R  ++LE+N 
Sbjct: 214 K----VIEEAPSPFLDEATRKAMGEQAVALAKAVGYYSAGTVEFIVDG-NRNFYFLEMNT 268


>gi|330468393|ref|YP_004406136.1| cysteine synthase [Verrucosispora maris AB-18-032]
 gi|328811364|gb|AEB45536.1| cysteine synthase [Verrucosispora maris AB-18-032]
          Length = 756

 Score = 82.5 bits (203), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 44/235 (18%), Positives = 89/235 (37%), Gaps = 28/235 (11%)

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL--ISPPYVIKP 132
           L +P   S   A A+  DK R++ ++S  G+P     +V      +  +     P V+KP
Sbjct: 427 LGLP--GSSADAVAVCRDKARTRDLLSRAGLPQPRYSVVRAPHEVAAAVARAGLPCVVKP 484

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ-------LLIEQYVDGIELTCGVM-GD 184
               +S G+ + + +      +    +     +       +L+EQY+ G E++      D
Sbjct: 485 TSDSASTGVRLCRTEAEAQAQVATLLAVTVNVRGQATYAAVLVEQYLAGAEVSVETFAAD 544

Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC-RGI 243
             +++  I         Y      + + H+ PA    +  + +++ A  A  A+G   G 
Sbjct: 545 GRVEIVGITDKTIGPEPY-----FVETGHIFPAPHRPE-SEAIRQTARSALAAVGLAHGA 598

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA-YAGYSFRELLLWMVEDAS 297
           +  +            +EIN +       + PE+     G +   L+   +  AS
Sbjct: 599 AHVEMRLTEAG--PVVVEINAR---LAGGMIPELIRLATGLN---LVERQLRAAS 645


>gi|302775624|ref|XP_002971229.1| hypothetical protein SELMODRAFT_411767 [Selaginella moellendorffii]
 gi|300161211|gb|EFJ27827.1| hypothetical protein SELMODRAFT_411767 [Selaginella moellendorffii]
          Length = 541

 Score = 82.5 bits (203), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 38/187 (20%), Positives = 74/187 (39%), Gaps = 15/187 (8%)

Query: 88  ALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD----SQHLISPPYVIKPLKGGSSLGIIV 143
           +L  DK  SK+++S   VPV P    +  + +        I  P +IKP+ GG   G+ +
Sbjct: 114 SLMGDKSASKKLMSGANVPVVPGYHGDDQSHELLQSEADRIGYPVLIKPVLGGGGKGMRI 173

Query: 144 IKKDQS----IPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSD 198
           +         +   L +S++     ++LIE+Y+     +   + GD   +V         
Sbjct: 174 VHSRDEFLDSLRSALRESAAAFGDTRVLIEKYIAQPRHIEVQIFGDRFGNVV-----HLF 228

Query: 199 FYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
                ++          PA +   D    + + A  A +A+        +F+ D  +   
Sbjct: 229 ERDCSVQRRHQKIIEEAPAPLMSDDFRNSIGQAAVNAAKAVNYENAGTVEFIVDTATGDF 288

Query: 258 FWLEINV 264
           F++E+N 
Sbjct: 289 FFMEMNT 295


>gi|268316242|ref|YP_003289961.1| acetyl-CoA carboxylase, biotin carboxylase [Rhodothermus marinus
           DSM 4252]
 gi|262333776|gb|ACY47573.1| acetyl-CoA carboxylase, biotin carboxylase [Rhodothermus marinus
           DSM 4252]
          Length = 452

 Score = 82.5 bits (203), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 41/220 (18%), Positives = 81/220 (36%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---S 110
            +H  +G   E+    AI     + +      A  L  DK  +K+ +   GVPV P    
Sbjct: 77  AVHPGYGFLSENADFSAICADHGLKFIGPSPEAIRLMGDKSLAKETMRKAGVPVVPGSDG 136

Query: 111 ILVN-RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
           ++ N +  +     I  P +IK   GG   G+ V+++++        +            
Sbjct: 137 VIENVKEGLRVAAEIGYPVMIKAAAGGGGRGMRVVQREEDFERQFNAARREAEAAFGRPD 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+++     +   V+GD   +V  +   +        K             +  D+ 
Sbjct: 197 VYLEKFIVQPRHVEIQVLGDGKGNVIHLGERECSIQRRHQKLL----EEAPSPIMDEDLR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +   A    QA+   G    +FL D   R  +++E+N 
Sbjct: 253 RRMGEAAVRGAQAVNYEGAGTIEFLVDA-DRNFYFMEMNT 291


>gi|184157728|ref|YP_001846067.1| acetyl/propionyl-CoA carboxylase subunit alpha [Acinetobacter
           baumannii ACICU]
 gi|332876411|ref|ZP_08444180.1| putative acetyl-CoA carboxylase, biotin carboxylase subunit
           [Acinetobacter baumannii 6014059]
 gi|183209322|gb|ACC56720.1| Acetyl/propionyl-CoA carboxylase, alpha subunit [Acinetobacter
           baumannii ACICU]
 gi|322508035|gb|ADX03489.1| Putative acyl-CoA carboxylase alpha chain protein [Acinetobacter
           baumannii 1656-2]
 gi|323517621|gb|ADX92002.1| Acetyl/propionyl-CoA carboxylase, alpha subunit [Acinetobacter
           baumannii TCDC-AB0715]
 gi|332735421|gb|EGJ66479.1| putative acetyl-CoA carboxylase, biotin carboxylase subunit
           [Acinetobacter baumannii 6014059]
          Length = 663

 Score = 82.5 bits (203), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 79/221 (35%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       +   I +    + A      K  SK ++   GVP+ P    
Sbjct: 77  AVHPGYGFLSENDQFALACQQHNICFIGPPVDAILAMGLKATSKALMEKAGVPLTPGYHG 136

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
                D        I  P +IK   GG   G+ ++++ +     L     ++ S    D 
Sbjct: 137 TNQDADFLKQQADRIGYPVLIKASAGGGGKGMSLVERSEDFLHALASCKREAKSSFGNDD 196

Query: 166 LLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDI 223
           +LIE+Y +    +   V GD   +               ++          PA ++P + 
Sbjct: 197 VLIERYVIQPRHIEVQVFGDTHGNYV-----HLFERDCSVQRRHQKVLEEAPAPQMPSEK 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              +++ A  A +A+   G    +F+        +++E+N 
Sbjct: 252 LDAMRQAAIDAARAVNYVGAGTVEFIV-EQDGTAYFMEMNT 291


>gi|312867837|ref|ZP_07728042.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Streptococcus
           parasanguinis F0405]
 gi|311096592|gb|EFQ54831.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Streptococcus
           parasanguinis F0405]
          Length = 454

 Score = 82.5 bits (203), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 78/220 (35%), Gaps = 16/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  FG   E+     + E + I +         L  DK+ +++ +   GVPV P    
Sbjct: 77  AIHPGFGFLSENSKFATMCEEVGIKFIGPSAKVMDLMGDKINARKQMIKAGVPVIPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
            +      ++    I  P ++K   GG   GI  ++K + +         ++ +      
Sbjct: 137 EVYTAEEALEIAERIGYPVMLKASAGGGGKGIRKVEKPEDLVAAFESASSEAQAAFGNGA 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+ +     +   ++ D    V  +            K             I   + 
Sbjct: 197 MYMERVIYPARHIEVQILADQHGHVIHLGERDCSLQRNNQKVL----EESPSIAIGKTLR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            ++   A  A +++G       +FL+D    + +++E+N 
Sbjct: 253 NQIGSAAVRAAESVGYENAGTIEFLYDEGKGEFYFMEMNT 292


>gi|253581936|ref|ZP_04859160.1| acetyl-CoA carboxylase [Fusobacterium varium ATCC 27725]
 gi|251836285|gb|EES64822.1| acetyl-CoA carboxylase [Fusobacterium varium ATCC 27725]
          Length = 450

 Score = 82.5 bits (203), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 82/220 (37%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+     I E+  I +            DK  ++      GVPV     +
Sbjct: 77  AIHPGYGFLSENARFGKICEMHNIAFIGPRPECIIKMGDKATARATAIENGVPVTNGTGI 136

Query: 114 NRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
            +   +++      I+ P +IK   GG   G+ + + D+ +  +++    ++ S      
Sbjct: 137 IKSIAEAKKEVNERITYPVMIKATAGGGGKGMRIARNDEELAANIVAAQNEAESAFGNPD 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE++V D   +   +MGD   +V  +            K             +P +I 
Sbjct: 197 VYIEKFVEDPRHIEIQIMGDKHGNVIYLGERDCSIQRRHQK----LIEEAPSFSLPYNIR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K +   A    +AI        +FL D  +   F++E+N 
Sbjct: 253 KAMGEAAVTLAKAINYDSAGTLEFLVDK-NNDFFFMEMNT 291


>gi|239503650|ref|ZP_04662960.1| Acetyl/propionyl-CoA carboxylase, alpha subunit [Acinetobacter
           baumannii AB900]
          Length = 663

 Score = 82.5 bits (203), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 79/221 (35%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       +   I +    + A      K  SK ++   GVP+ P    
Sbjct: 77  AVHPGYGFLSENDQFALACQQHNICFIGPPVDAILAMGLKATSKALMEKAGVPLTPGYHG 136

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
                D        I  P +IK   GG   G+ ++++ +     L     ++ S    D 
Sbjct: 137 TNQDADFLKQQADRIGYPVLIKASAGGGGKGMSLVERSEDFLHALASCKREAKSSFGNDD 196

Query: 166 LLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDI 223
           +LIE+Y +    +   V GD   +               ++          PA ++P + 
Sbjct: 197 VLIERYVIQPRHIEVQVFGDTHGNYV-----HLFERDCSVQRRHQKVLEEAPAPQMPSEK 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              +++ A  A +A+   G    +F+        +++E+N 
Sbjct: 252 LDAMRQAAIDAARAVNYVGAGTVEFIV-EQDGTAYFMEMNT 291


>gi|306844088|ref|ZP_07476682.1| propionyl-CoA carboxylase, alpha subunit [Brucella sp. BO1]
 gi|306275531|gb|EFM57263.1| propionyl-CoA carboxylase, alpha subunit [Brucella sp. BO1]
          Length = 667

 Score = 82.5 bits (203), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 45/240 (18%), Positives = 84/240 (35%), Gaps = 16/240 (6%)

Query: 34  SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDK 93
           S I +D+ +   +     D      +G   E+      L+   + +    + A     DK
Sbjct: 59  SYIVIDK-ILAAIKETGADAVHPG-YGFLSENPRFAEALKAANVTFIGPPVNAIDAMGDK 116

Query: 94  MRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQS 149
           + SK++ +  GV   P  +      D        I  P +IK   GG   G+ +   D  
Sbjct: 117 ITSKKLAAEAGVSTVPGHMGLIEDADEAVRIAGSIGYPVMIKASAGGGGKGMRIAWNDDE 176

Query: 150 ----IPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYEL 204
                 L   ++ S    D++ IE++V     +   V+GD   +V  +   +        
Sbjct: 177 AREGFQLSRNEAKSSFGDDRIFIEKFVTQPRHIEIQVLGDQHGNVVYLGERECSIQRRNQ 236

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K             +     K +   A    +A+G       +F+ D  +R  ++LE+N 
Sbjct: 237 K----VIEEAPSPFLDEATRKAMGEQAVALAKAVGYYSAGTVEFIVDG-NRNFYFLEMNT 291


>gi|254510929|ref|ZP_05122996.1| methylcrotonyl-CoA carboxylase, alpha subunit [Rhodobacteraceae
           bacterium KLH11]
 gi|221534640|gb|EEE37628.1| methylcrotonyl-CoA carboxylase, alpha subunit [Rhodobacteraceae
           bacterium KLH11]
          Length = 643

 Score = 82.5 bits (203), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 40/226 (17%), Positives = 84/226 (37%), Gaps = 25/226 (11%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      +E   + +      A      K  +K ++   GVPV P    
Sbjct: 77  AIHPGYGFLSENPDFVDAVEAAGLTFIGPSADAIRKMGLKDAAKVLMEQAGVPVVPGYHG 136

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS-----SWNHGD 164
           +    +    +   I  P +IK + GG   G+ ++++ +     L  +      ++   D
Sbjct: 137 DNQDPEHLAVAAEGIGYPVLIKAVAGGGGKGMRLVERPEGFQPALDSARGEAKTAFG-ND 195

Query: 165 QLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            +L+E++V     +   V GD +  V              L+          PA  +  +
Sbjct: 196 AVLVEKFVAKPRHIEVQVFGDGTHAV------HLFERDCSLQRRHQKVIEEAPAPGMTAE 249

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR----KVFWLEINV 264
           +   + +    A +AIG +G    +F+ D        + +++E+N 
Sbjct: 250 MRDAMGQAGVRAAEAIGYKGAGTVEFIVDASDGLRPDRFWFMEMNT 295


>gi|33595307|ref|NP_882950.1| pyruvate carboxylase [Bordetella parapertussis 12822]
 gi|33565384|emb|CAE36189.1| putative pyruvate carboxylase [Bordetella parapertussis]
          Length = 1167

 Score = 82.5 bits (203), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 31/221 (14%), Positives = 77/221 (34%), Gaps = 18/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       +   I +            +K+ ++ +  S GVPV P+   
Sbjct: 81  AIHPGYGFLSENPDFAQACDDAGIAFIGPSPAVLRSLGNKVAARNLAISLGVPVVPATDA 140

Query: 114 NRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
                 +       +  P ++K   GG   G+  I  +  +   +     ++ +    D+
Sbjct: 141 LPHDDAACLRLAREVGYPLMLKASWGGGGRGMRAIHDEAELLPAIASARREAGAAFGNDE 200

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           + +E+ V     +   V+G+   ++              ++  +       PA  +    
Sbjct: 201 VYLEKLVQRAHHVEVQVLGNQHGNLV-----HVFERDCSVQRRNQKVIERAPAPYLGDAG 255

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + + + A    + +G       +FL D  +   +++E+N 
Sbjct: 256 RQALFQAALTLTRGVGYTHAGTVEFLMDADTGNFYFIEVNP 296


>gi|265984245|ref|ZP_06096980.1| carbamoyl-phosphate synthase subunit L ATP-binding protein
           [Brucella sp. 83/13]
 gi|264662837|gb|EEZ33098.1| carbamoyl-phosphate synthase subunit L ATP-binding protein
           [Brucella sp. 83/13]
          Length = 397

 Score = 82.5 bits (203), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 45/240 (18%), Positives = 85/240 (35%), Gaps = 16/240 (6%)

Query: 34  SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDK 93
           S I +D+ +   +     D      +G   E+      L+   + +    + A     DK
Sbjct: 59  SYIVIDK-ILAAIKETGADAVHPG-YGFLSENPRFAEALKAANVTFIGPPVNAIDAMGDK 116

Query: 94  MRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQS 149
           + SK++ +  GV   P  +      D        I  P +IK   GG   G+ +   D+ 
Sbjct: 117 ITSKKLAAEAGVSTVPGHMGLIEDADEAVRIAGSIGYPVMIKASAGGGGKGMRIAWNDEE 176

Query: 150 ----IPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYEL 204
                 L   ++ S    D++ IE++V     +   V+GD   +V  +   +        
Sbjct: 177 ARKGFQLSRNEAKSSFGDDRIFIEKFVTQPRHIEIQVLGDQHGNVVYLGERECSIQRRNQ 236

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K             +     K +   A    +A+G       +F+ D  +R  ++LE+N 
Sbjct: 237 K----VIEEAPSPFLDEATRKAMGEQAVALAKAVGYYSAGTVEFIVDG-NRNFYFLEMNT 291


>gi|191638318|ref|YP_001987484.1| pyruvate carboxylase [Lactobacillus casei BL23]
 gi|190712620|emb|CAQ66626.1| Pyruvate carboxylase [Lactobacillus casei BL23]
 gi|327382344|gb|AEA53820.1| Pyruvate carboxylase [Lactobacillus casei LC2W]
 gi|327385545|gb|AEA57019.1| Pyruvate carboxylase [Lactobacillus casei BD-II]
          Length = 1145

 Score = 82.5 bits (203), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 33/245 (13%), Positives = 82/245 (33%), Gaps = 25/245 (10%)

Query: 33  VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASAL 89
            + +D+D  +  +      D     +H  +G   E+      +    + +         +
Sbjct: 58  AAYLDMD-DIIRIAKQSGAD----AIHPGYGLLSENAEFARKVRAAGLIFVGPRSELLDI 112

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFT----MDSQHLISPPYVIKPLKGGSSLGIIVIK 145
             DK+ +K+     G+   P             D       P ++K   GG   G+ ++ 
Sbjct: 113 FGDKVAAKEAAHKAGLATIPGTPEPTRDFSEIQDFTATHGFPVMLKAASGGGGKGMRIVH 172

Query: 146 KDQSIPL----DLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFY 200
            +  +       + ++ +    D++ +E+Y+     +   V+GD    +           
Sbjct: 173 SEAELEAVYQNAVNEAKASFGDDRMYVEKYIASAKHIEVQVLGDEHGHLL-----HLFER 227

Query: 201 SYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
              ++        + PA  +P  +   + + A    Q +        +FL D    + ++
Sbjct: 228 DCSVQRRQQKVVEIAPAVALPTALRARICQSAVDLMQGLHYENAGTVEFLVD--GDQYYF 285

Query: 260 LEINV 264
           +E+N 
Sbjct: 286 IEVNP 290


>gi|156933942|ref|YP_001437858.1| hypothetical protein ESA_01768 [Cronobacter sakazakii ATCC BAA-894]
 gi|156532196|gb|ABU77022.1| hypothetical protein ESA_01768 [Cronobacter sakazakii ATCC BAA-894]
          Length = 1213

 Score = 82.5 bits (203), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 34/198 (17%), Positives = 71/198 (35%), Gaps = 14/198 (7%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---QHLISPPYVIKP 132
            + +             K R++ + +  GVP+ P   + R   ++      I  P ++K 
Sbjct: 110 GLVFIGPTPQQIGDFGLKHRARALAAQAGVPMTPGSGLLRSLEEATQAAEDIGYPVMLKT 169

Query: 133 LKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQLLIEQYV-DGIELTCGVMGDASL 187
             GG  +G+       S+         Q   +   D + IE+++     L   ++GD   
Sbjct: 170 TAGGGGIGLTRCDDAPSLAQAWESVRRQGLQFFSDDGVFIEKFISRARHLEVQILGDGKG 229

Query: 188 DVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRS 246
                 V         L+  +       PA  +P    + +   A    +++  R     
Sbjct: 230 -----YVAALGERDCSLQRRNQKVVEETPAPGLPQATREALHAAAVALGESVNYRSAGTV 284

Query: 247 DFLFDPLSRKVFWLEINV 264
           +F++D  S + ++LE+N 
Sbjct: 285 EFIYDAGSDRFWFLEVNT 302


>gi|86159437|ref|YP_466222.1| pyruvate carboxylase [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85775948|gb|ABC82785.1| pyruvate carboxylase [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 1148

 Score = 82.5 bits (203), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 77/221 (34%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+       E   I +            DK+  ++   + GVPV P    
Sbjct: 81  AIHPGYGFLSENPEFSEACERAGIAFVGPTSEMQRKLGDKVAGRKAAQAAGVPVVPGTPE 140

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
            IL +   +        P ++K   GG   G+ V +  + +   L+    ++ +      
Sbjct: 141 PILHDEEALIFAKQHGYPIIVKASAGGGGRGMRVARSQKELLEGLVSARSEARAAFGNAA 200

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDI 223
           + +E+Y++    +   V+GD   ++  +            K          P+  +    
Sbjct: 201 VFLERYIERPKHIEVQVLGDHHGNLVHLFERDCSIQRRHQK-----VVEFAPSLALTEAQ 255

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +   A    +++  R     +FL D      +++E+N 
Sbjct: 256 REAICGDALKIARSVSYRNAGTVEFLVDQQGHH-YFIEVNP 295


>gi|41408411|ref|NP_961247.1| AccA1 [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|41396767|gb|AAS04630.1| AccA1 [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 671

 Score = 82.5 bits (203), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 83/221 (37%), Gaps = 17/221 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+    A  E   + +      A  +  DK+ +K  V+   VPV P +  
Sbjct: 77  AIHPGYGFLSENADFAAACERAGVVFLGPPARAIQVMGDKITAKNAVAEFDVPVVPGVAK 136

Query: 114 ----NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
               +   + +   I  P +IKP  GG   G+ ++++   +   L+    +++S    D 
Sbjct: 137 LGLGDDELVAAADEIGYPVLIKPSAGGGGKGMRLVEEPGRLREALVGARREAASSFGDDT 196

Query: 166 LLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           L +E++ +    +   ++ DA  +V  +   +        K             +  +  
Sbjct: 197 LFLERFMLRPRHIEVQILADAHGNVVHLGERECSLQRRHQK----VIEEAPSPLLDPETR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLS-RKVFWLEINV 264
             +   A    +++   G    +F+       + F++E+N 
Sbjct: 253 ARIGAAACNTARSVDYVGAGTVEFIVSADRPDEFFFMEMNT 293


>gi|168015903|ref|XP_001760489.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162688186|gb|EDQ74564.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 1117

 Score = 82.5 bits (203), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 53/279 (18%), Positives = 105/279 (37%), Gaps = 36/279 (12%)

Query: 18  SGKACASALEDAGFKVSQID------------VDRS---------VGLVLAHLKPDLAFN 56
           SG     AL++ G++V  I+             DR+         V  VL   +PD    
Sbjct: 48  SGTQACKALKEEGYEVILINSNPATIMTDPETADRTYITPMTPELVEKVLEKERPDAILP 107

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G    +         +L+   +    + + A   + D+   KQ ++  GV   PS  
Sbjct: 108 TMGGQTALNLACALAESGVLDKYNVELIGAKLDAIQKAEDRDLFKQAMAKIGVKTPPSGI 167

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
              ++   + ++ +   P +I+P       G  +    +          + +   Q+L+E
Sbjct: 168 AHTLDECFVIAERIGEFPLIIRPAFTLGGTGGGIAYNKEEFEAICKAGLNASINSQVLVE 227

Query: 170 QYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
           + + G  E    VM D + +V  I   ++      +   + +S  V PA+ +    Y+ +
Sbjct: 228 KSLLGWKEYELEVMRDLADNVVIICSIEN---IDSMGVHTGDSITVAPAQTLTDKEYQRL 284

Query: 228 QRLAFLAHQAIG--CRGISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG  C G S   F  +P   +V  +E+N 
Sbjct: 285 RDQSVAIIREIGVECGG-SNVQFAVNPKDGEVMVIEMNP 322



 Score = 50.1 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 31/211 (14%), Positives = 79/211 (37%), Gaps = 19/211 (9%)

Query: 68  VQAILELLE---------IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
           +Q  LE  +         +    +   +   + D+ R   +++  G+   PS  + +   
Sbjct: 672 IQTYLEKFQPDAASGEGKVKIWGTTPDSIDAAEDRKRFDAILNDLGIKS-PSGGIAKSED 730

Query: 119 DS---QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDG 174
           D+      +  P V++P        + ++  D  +   L  +   +    +L+++Y +D 
Sbjct: 731 DALAIAKRVGYPVVVRPSYVLGGRAMEIVYNDDKLKTYLETAVEVDPERPVLVDKYLIDA 790

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFL 233
            E+    + DA  +V    + +   +  +    S +S   LP+  I  +   +++     
Sbjct: 791 TEIDVDSLTDAEGNVVIGGIME---HIEQAGVHSGDSACTLPSQNIGAEALGKIRDYTTK 847

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             + +G  G+    +       +V+ +E N 
Sbjct: 848 LARRLGVVGLMNCQYAITSEC-EVYIIEANP 877


>gi|253688548|ref|YP_003017738.1| urea carboxylase [Pectobacterium carotovorum subsp. carotovorum
           PC1]
 gi|251755126|gb|ACT13202.1| urea carboxylase [Pectobacterium carotovorum subsp. carotovorum
           PC1]
          Length = 1204

 Score = 82.5 bits (203), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 32/204 (15%), Positives = 68/204 (33%), Gaps = 14/204 (6%)

Query: 70  AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---QHLISP 126
           A  E   I +             K R++++ ++ GVP+ P   +     D+      I  
Sbjct: 93  AACEKAGIAFVGPTAQQIGEFGLKHRARELAAAAGVPMTPGTPLLASLEDALSAAEDIGY 152

Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQLLIEQYVD-GIELTCGV 181
           P ++K   GG  +G+       ++             +     + +E+ +D    +   +
Sbjct: 153 PVMLKSTAGGGGIGLTRCADAVALQAAWESVRRLGEQFFSDAGVFLERCIDRARHVEVQI 212

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGC 240
            GD    V  +           L+  +       PA  +P      +   A    + +  
Sbjct: 213 FGDGKGRVVALGE-----RDCSLQRRNQKVVEETPAPHLPDATRAALLASAVKLGELVNY 267

Query: 241 RGISRSDFLFDPLSRKVFWLEINV 264
           R     ++++D      F+LE+N 
Sbjct: 268 RSAGTVEYIYDAERDAFFFLEVNT 291


>gi|114706292|ref|ZP_01439194.1| propionyl-CoA carboxylase alpha chain precursor [Fulvimarina pelagi
           HTCC2506]
 gi|114538153|gb|EAU41275.1| propionyl-CoA carboxylase alpha chain precursor [Fulvimarina pelagi
           HTCC2506]
          Length = 671

 Score = 82.5 bits (203), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 80/220 (36%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      LE   I +      A     DK+ SK++ +  GV   P  + 
Sbjct: 81  AVHPGYGFLSENAKFCEALEAAGITFIGPKSKAIKAMGDKITSKEIAADAGVSTVPGHMG 140

Query: 114 NRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
                D        I  P +IK   GG   G+ +   D+           +++S    D+
Sbjct: 141 LIGDADEAARIAAEIGYPVMIKASAGGGGKGMRIAWDDEEAKEGFARSKSEAASSFGDDR 200

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE++V+    +   V+ DA  +   +   +        K             +  +  
Sbjct: 201 IFIEKFVEEPRHIEIQVLADAHGNCIYLNERECSIQRRNQK----VIEEAPSPFLDEETR 256

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +++   A    +A+  +     +F+ D  +R  ++LE+N 
Sbjct: 257 QKMGEQAVALAKAVEYQSAGTVEFIVDK-NRNFYFLEMNT 295


>gi|260555533|ref|ZP_05827754.1| urea carboxylase [Acinetobacter baumannii ATCC 19606]
 gi|260412075|gb|EEX05372.1| urea carboxylase [Acinetobacter baumannii ATCC 19606]
          Length = 1201

 Score = 82.1 bits (202), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 41/257 (15%), Positives = 89/257 (34%), Gaps = 32/257 (12%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+     + E   I +             K  ++++     VP+ P   +
Sbjct: 77  AIHPGYGFLSENAEFCDLCESQGIAFIGPTSSQMLDFGLKHTARELAIKSNVPLLPGSSL 136

Query: 114 NRFTMDS---QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN----HGDQL 166
                ++      I  P ++K   GG  +G+ ++  +  +       S           L
Sbjct: 137 LADEAEALTEAARIGYPVMLKSTAGGGGIGMRLVWNETELKDAYQTVSYLAQVNFKDAGL 196

Query: 167 LIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIY 224
            +E++V     +   + GD    V  +           ++  +       PA  +     
Sbjct: 197 YLEKFVQHARHIEVQIFGDGKGQVLALGE-----RDCSVQRRNQKVIEETPAPHLNEQQR 251

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
             +Q++A    Q++  R     +F+ D  +++ ++LE+N             +    G +
Sbjct: 252 DYLQKVAIQLMQSVNYRSAGTVEFVMDTETQEFYFLEVNT-----------RLQVEHGVT 300

Query: 285 ---FR-ELLLWMVEDAS 297
              F  +L+ WMV  AS
Sbjct: 301 EQVFSVDLVEWMVTLAS 317


>gi|15598087|ref|NP_251581.1| geranyl-CoA carboxylase, alpha-subunit (biotin-containing)
           [Pseudomonas aeruginosa PAO1]
 gi|9948982|gb|AAG06279.1|AE004715_5 geranyl-CoA carboxylase, alpha-subunit (biotin-containing)
           [Pseudomonas aeruginosa PAO1]
          Length = 661

 Score = 82.1 bits (202), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 70/220 (31%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       E   I +      A  L   K  SK  + + GVP  P    
Sbjct: 79  AIHPGYGFLSENAEFARACEAAGIVFIGPDAEAIHLMGSKRLSKIAMLAAGVPCIPGYEG 138

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS-----SWNHGD 164
                         I  P +IK   GG   G+ ++++   +   L  +      ++   +
Sbjct: 139 AEQDDATLRREAERIGYPLMIKASAGGGGRGMRLVEEPGQLLEQLRTARSEALGAFGSAE 198

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
            +L    +    +   V GD   ++  +            K             +  D+ 
Sbjct: 199 LILERAVLRPRHVEIQVFGDRHGNLLYLGERDCSVQRRHQK----VIEEAPCPVLDADLR 254

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +   A  A  ++   G    +FL      + ++LE+N 
Sbjct: 255 RAMGEAAVKAAASVNYVGAGTVEFLL-GEDGRFYFLEMNT 293


>gi|329667282|gb|AEB93230.1| carbamoylphosphate synthase large subunit [Lactobacillus johnsonii
           DPC 6026]
          Length = 1062

 Score = 82.1 bits (202), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 43/297 (14%), Positives = 95/297 (31%), Gaps = 38/297 (12%)

Query: 22  CASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ--- 69
           C  AL+  G++   I         D   S  L    L  +   NV      E  +VQ   
Sbjct: 577 CVKALQKMGYEAIVINSNPETVSTDFSISDKLYFEPLTLEDVLNVCDLEKPEGVIVQFGG 636

Query: 70  -------AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDS 120
                  A L+   I    + +     + D+    Q++    +     +        + +
Sbjct: 637 QTSINLAAGLQDHGIKILGTSVKDLNRAEDRELFDQIIKKLKLNQPKGLTATTHEGVIKA 696

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P +++P        + ++     +   L           +L++ Y+DG E    
Sbjct: 697 AEELGYPVLVRPSYVLGGKAMEIVYNKGELEEYLHDHVDIAADHPILVDDYLDGRECDVD 756

Query: 181 VMGDAS---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQ 236
            + D     L      +  +  +S        +S  V P      ++  ++  +      
Sbjct: 757 AICDGQDVLLPGIMEHIEHAGVHS-------GDSMAVYPPQNFTDEVKDKIMDVTRKLAL 809

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            + C GI    F+    + +V+ +E+N +   T     P ++   G    ++   ++
Sbjct: 810 TLNCVGIMNIQFIVR--NGEVYVIEVNPRASRT----VPFLSKITGIEMAQVATRVI 860



 Score = 77.1 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 49/289 (16%), Positives = 98/289 (33%), Gaps = 39/289 (13%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI---------DVD------------RSVGLV 45
           G ++E + S   G     AL + G++V  +         D               S+  +
Sbjct: 21  GQAAEFDYS---GTQACLALREEGYEVVLVNSNPATIMTDTTIADKVYIEPLTVESISRI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +    PD     L G  G +  +      IL+ L I    + + +   + D+ + K++  
Sbjct: 78  IRQEYPDAILPTLGGQVGLNMALSLAKTGILDELNIELLGTRLSSIEQAEDREKFKELCK 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G PV PS  VN     ++    I  P +++P       G  +    + +         
Sbjct: 138 ELGEPVPPSTTVNTVEEALEFGDRIGYPIIVRPAFTMGGTGGGICNNHEELAKIAKNGLE 197

Query: 160 WNHGDQLLIEQYVDG---IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216
            +   + LIE+ + G   IE       D +  +            +     + +S    P
Sbjct: 198 LSPVTECLIEKSIAGYKEIEFEVMRDHDDNAMIVCCMENFDPVGIH-----TGDSIVFSP 252

Query: 217 AK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           ++ +    Y+ ++  +    +A+   G        DP S     +E+N 
Sbjct: 253 SQTLSDKEYQMLRDCSLRLIRALKIEGGCNVQLALDPNSFDYDVIEVNP 301


>gi|296113060|ref|YP_003626998.1| acetyl-CoA carboxylase biotin carboxylase AccC [Moraxella
           catarrhalis RH4]
 gi|295920754|gb|ADG61105.1| acetyl-CoA carboxylase biotin carboxylase AccC [Moraxella
           catarrhalis RH4]
 gi|326560436|gb|EGE10818.1| biotin carboxylase [Moraxella catarrhalis 7169]
 gi|326561640|gb|EGE11977.1| biotin carboxylase [Moraxella catarrhalis 103P14B1]
 gi|326563587|gb|EGE13841.1| biotin carboxylase [Moraxella catarrhalis 12P80B1]
 gi|326565829|gb|EGE15991.1| biotin carboxylase [Moraxella catarrhalis BC1]
 gi|326570484|gb|EGE20524.1| biotin carboxylase [Moraxella catarrhalis BC8]
 gi|326571168|gb|EGE21192.1| biotin carboxylase [Moraxella catarrhalis BC7]
 gi|326573458|gb|EGE23426.1| biotin carboxylase [Moraxella catarrhalis 101P30B1]
 gi|326575644|gb|EGE25567.1| biotin carboxylase [Moraxella catarrhalis CO72]
 gi|326577108|gb|EGE27002.1| biotin carboxylase [Moraxella catarrhalis O35E]
          Length = 447

 Score = 82.1 bits (202), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 37/219 (16%), Positives = 81/219 (36%), Gaps = 19/219 (8%)

Query: 58  LHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---SI 111
           +H  +G   E+      +E   + +         L  +K+ +   +   GVP  P     
Sbjct: 78  IHPGYGFLSENAEFAERVEEAGLTFVGPHPEHIRLMGNKVSAINAMKEAGVPTVPGSIGA 137

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGDQLL 167
           +      +    I  P ++K   GG   G+ V+++ + +         ++ +    D + 
Sbjct: 138 ITLGNAEEQAREIGFPLIVKAAAGGGGRGMRVVERFEELLIQVQAAKTEAQNAFGDDTVY 197

Query: 168 IEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYK 225
           +E+++     +   V+GD + +               L+          PA  IP ++  
Sbjct: 198 MERFLKNPRHVEVQVLGDGNGNAL-----HLFDRDCSLQRRHQKVLEEAPAPDIPDEVRT 252

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +      A + IG RG    +FL+   + + F++E+N 
Sbjct: 253 PILEACVHACKKIGYRGAGTFEFLY--ENGEFFFIEMNT 289


>gi|254510847|ref|ZP_05122914.1| acetyl-CoA carboxylase, biotin carboxylase [Rhodobacteraceae
           bacterium KLH11]
 gi|221534558|gb|EEE37546.1| acetyl-CoA carboxylase, biotin carboxylase [Rhodobacteraceae
           bacterium KLH11]
          Length = 449

 Score = 82.1 bits (202), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 71/220 (32%), Gaps = 18/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---- 109
            +H  +G   E+     I+E   I +         +  DK+ +K  +   GVP  P    
Sbjct: 77  AIHPGYGFLSENAEFVQIVEDHGITFIGPTAEHIRVMGDKITAKDTMKELGVPCVPGSDG 136

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
            +               P +IK   GG   G+ V      +    + + +        D+
Sbjct: 137 GVPTLADAKRIGEEFGYPVIIKATAGGGGRGMKVAMSADEMESAFMTARAEGKAAFGNDE 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+Y+     +   V GD       +            K             I  +  
Sbjct: 197 VYIEKYLTTPRHIEIQVFGDGKGKAVHLGERDCSLQRRHQKVF----EEAPGPCITPEER 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            ++ ++   A   I   G    +FL+   + + +++E+N 
Sbjct: 253 AKIGKVCADAVAKINYIGAGTIEFLY--ENGEFYFIEMNT 290


>gi|82751206|ref|YP_416947.1| acetyl-CoA biotin carboxylase [Staphylococcus aureus RF122]
 gi|82656737|emb|CAI81166.1| acetyl-CoA biotin carboxylase [Staphylococcus aureus RF122]
          Length = 453

 Score = 82.1 bits (202), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 41/220 (18%), Positives = 79/220 (35%), Gaps = 18/220 (8%)

Query: 56  NVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
           N +H  +G   E       +E   I +         +  DK+ ++Q V   GVPV P   
Sbjct: 75  NAIHPGYGFLSESTKFAQTVEEQGIAFIGPTKKTMEMMGDKITARQTVHHAGVPVIPGSN 134

Query: 111 --ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS----WNHGD 164
             +            I  P VIK   GG   GI ++KK + +     ++ S    +   D
Sbjct: 135 GAVNHVSEIEKLAKDIGYPVVIKAASGGGGKGIRIVKKAEDLEKAFKEAKSEGKKYFDDD 194

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           ++ +E ++     +   VMGD   +   +            + +         A +  + 
Sbjct: 195 RVYVEAFIPVAKHVEVQVMGDGQDNYVHLGERDCSV----QRKNQKLIEESPCAALTEER 250

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            +++   A    +A   R +   +FL        +++E+N
Sbjct: 251 RQQICNDAVKVARAANYRSVGTIEFLVT--DNAHYFIEMN 288


>gi|239832077|ref|ZP_04680406.1| acetyl-CoA carboxylase, biotin carboxylase [Ochrobactrum
           intermedium LMG 3301]
 gi|239824344|gb|EEQ95912.1| acetyl-CoA carboxylase, biotin carboxylase [Ochrobactrum
           intermedium LMG 3301]
          Length = 669

 Score = 82.1 bits (202), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 45/240 (18%), Positives = 84/240 (35%), Gaps = 16/240 (6%)

Query: 34  SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDK 93
           S I +D+ +   +     D      +G   E+      L+   + +    + A     DK
Sbjct: 61  SYIVIDK-ILAAIKETGADAVHPG-YGFLSENPRFAEALKAANVTFIGPPVNAIDAMGDK 118

Query: 94  MRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQS 149
           + SK++ +  GV   P  +      D        I  P +IK   GG   G+ +   D  
Sbjct: 119 ITSKKLAAEAGVSTVPGHMGLIEDADEAVKIAGSIGYPVMIKASAGGGGKGMRIAWNDDE 178

Query: 150 ----IPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYEL 204
                 L   ++ S    D++ IE++V     +   V+GD   +V  +   +        
Sbjct: 179 AREGFQLSRNEAKSSFGDDRIFIEKFVTQPRHIEIQVLGDQHGNVVYLGERECSIQRRNQ 238

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K             +     K +   A    +A+G       +F+ D  +R  ++LE+N 
Sbjct: 239 K----VIEEAPSPFLDEATRKAMGEQAVALAKAVGYFSAGTVEFIVDG-NRNFYFLEMNT 293


>gi|28870100|ref|NP_792719.1| acetyl-CoA carboxylase, biotin carboxylase [Pseudomonas syringae
           pv. tomato str. DC3000]
 gi|28853346|gb|AAO56414.1| acetyl-CoA carboxylase, biotin carboxylase [Pseudomonas syringae
           pv. tomato str. DC3000]
          Length = 450

 Score = 82.1 bits (202), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 82/221 (37%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---- 109
            +H  +G   E+      +E   + +         +  DK+ +K+ +   GVP  P    
Sbjct: 77  AIHPGYGFLSENAAFAERIEQAGLTFIGPSAACIRVMGDKVAAKRAMREAGVPCVPGPDT 136

Query: 110 SILVNRFT-MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGD 164
           S+  +  + +     I  P ++K   GG   G+ V+ ++Q +   +     ++       
Sbjct: 137 SMPADPHSILAIARDIGYPVIVKAAGGGGGRGMRVVHEEQQLLDAIALTGEEARRAFGNP 196

Query: 165 QLLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           +L IE++ V    +   V+ DA  +   +            K             +   +
Sbjct: 197 ELYIEKFLVQPRHVEIQVLCDAYGNAVWLGSRDCSMQRRHQKVL----EEAPAPGVDAAL 252

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              V      A + IG +G+   +FLF   + + +++E+N 
Sbjct: 253 MTRVGERCAQACRQIGYQGVGTFEFLF--ENDEFYFIEMNT 291


>gi|116050894|ref|YP_790283.1| putative biotin carboxylase/biotin carboxyl carrier protein
           [Pseudomonas aeruginosa UCBPP-PA14]
 gi|115586115|gb|ABJ12130.1| putative biotin carboxylase/biotin carboxyl carrier protein
           [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 661

 Score = 82.1 bits (202), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 70/220 (31%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       E   I +      A  L   K  SK  + + GVP  P    
Sbjct: 79  AIHPGYGFLSENAEFARACEAAGIVFIGPDAEAIHLMGSKRLSKIAMLAAGVPCIPGYEG 138

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS-----SWNHGD 164
                         I  P +IK   GG   G+ ++++   +   L  +      ++   +
Sbjct: 139 AEQDDATLRREAERIGYPLMIKASAGGGGRGMRLVEEPGQLLEQLRTARSEALGAFGSAE 198

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
            +L    +    +   V GD   ++  +            K             +  D+ 
Sbjct: 199 LILERAVLRPRHVEIQVFGDRHGNLLYLGERDCSVQRRHQK----VIEEAPCPVLDADLR 254

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +   A  A  ++   G    +FL      + ++LE+N 
Sbjct: 255 RAMGEAAVKAAASVNYVGAGTVEFLL-GEDGRFYFLEMNT 293


>gi|317011281|gb|ADU85028.1| biotin carboxylase [Helicobacter pylori SouthAfrica7]
          Length = 455

 Score = 82.1 bits (202), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 38/225 (16%), Positives = 78/225 (34%), Gaps = 14/225 (6%)

Query: 49  LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
            + D  F   +G   E+     I     + +        AL  DK ++K V+   G+PV 
Sbjct: 84  FEADAIFPG-YGFLSENQNFVEICSHHSLEFIGPSAKVMALMSDKSKAKSVMKEAGMPVI 142

Query: 109 PS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSW 160
                 +   +   +    I  P +IK   GG   G+ V++    +         ++ S 
Sbjct: 143 EGSDGLLKSYQEAEEIADKIGYPVIIKAAAGGGGRGMRVVEDKSKLKNLYLAAETEALSA 202

Query: 161 NHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI 219
                + +E+++     +   ++ D   +V  +          + K             +
Sbjct: 203 FGDGSVYLEKFINKPKHIEVQILADKHGNVIHVGERDCSVQRRQQKLI----EETPAVVL 258

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              + K +   A  A + IG  G    +FL D   +  +++E+N 
Sbjct: 259 EESVRKRLLETAIKAAKHIGYVGAGTFEFLLDSNMKDFYFMEMNT 303


>gi|262278708|ref|ZP_06056493.1| methylcrotonoyl-CoA carboxylase subunit alpha [Acinetobacter
           calcoaceticus RUH2202]
 gi|262259059|gb|EEY77792.1| methylcrotonoyl-CoA carboxylase subunit alpha [Acinetobacter
           calcoaceticus RUH2202]
          Length = 664

 Score = 82.1 bits (202), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 79/221 (35%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       +   I +    + A      K  SK ++   GVP+ P    
Sbjct: 77  AIHPGYGFLSENDQFALACQQHNICFIGPPVDAILAMGLKATSKALMEKAGVPLTPGYHG 136

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
                D        I  P +IK   GG   G+ ++++ +     L     ++ S    D 
Sbjct: 137 TNQDADFLKQQADQIGYPVLIKASAGGGGKGMSLVERSEDFLHALASCKREAKSSFGNDD 196

Query: 166 LLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDI 223
           +LIE+Y +    +   V GD   +               ++          PA ++P + 
Sbjct: 197 VLIERYVIQPRHIEVQVFGDTHGNYV-----HLFERDCSVQRRHQKVLEEAPAPQMPSEK 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              +++ A  A +A+   G    +F+        +++E+N 
Sbjct: 252 LDAMRQAAIDAARAVDYVGAGTVEFIV-EQDGTAYFMEMNT 291


>gi|166367783|ref|YP_001660056.1| carbamoyl phosphate synthase large subunit [Microcystis aeruginosa
           NIES-843]
 gi|166090156|dbj|BAG04864.1| pyrimidine-specific carbamoyl-phosphate synthase large chain
           [Microcystis aeruginosa NIES-843]
          Length = 1081

 Score = 82.1 bits (202), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 55/279 (19%), Positives = 105/279 (37%), Gaps = 36/279 (12%)

Query: 18  SGKACASALEDAGFKVSQID------------VDRS---------VGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++             DR+         V  ++A  +PD    
Sbjct: 29  SGTQACKALREEGYEVILVNSNPASIMTDPEMADRTYIEPILPEIVEKIIAKERPDAILP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  V      +LE   +    + + A   + D+   K+ +   GVPVCPS +
Sbjct: 89  TMGGQTALNTAVALAKSGVLEKYNVELIGAKLPAIEKAEDRELFKKAMEKIGVPVCPSGI 148

Query: 113 ---VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
              +      +  + S P +I+P       G  +    +            +   Q+L+E
Sbjct: 149 ANNLEEAKAIAHQIGSYPLIIRPAFTLGGTGGGIAYNQEEFEPMAQYGLDCSPTSQILVE 208

Query: 170 QYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKE 226
           + + G  E    VM D + +V  I   ++    ++       +S  V PA+ +    Y+ 
Sbjct: 209 KSLIGWKEYELEVMRDLADNVVIICSIEN----FDPMGVHTGDSITVAPAQTLTDKEYQR 264

Query: 227 VQRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           ++  +    + IG   G S   F  +P +  V  +E+N 
Sbjct: 265 LRDYSKAIIREIGVETGGSNIQFSVNPTNGDVIVIEMNP 303



 Score = 52.8 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 26/204 (12%), Positives = 73/204 (35%), Gaps = 11/204 (5%)

Query: 68  VQAILELLEIPYT----HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQ 121
           +Q  LE    P       +   +   + D+ R ++++    +    + +   F       
Sbjct: 653 LQKYLESPNCPVNTKIWGTSPDSIDAAEDRERFEKILRELDIRQPLNGIARNFQESQAVA 712

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCG 180
             I  P V++P        + ++  D  +   +  +        +LI+++++  IE+   
Sbjct: 713 KRIGYPVVVRPSYVLGGRAMEIVYSDSELERYMKYAVQIEPDHPILIDKFLENAIEVDVD 772

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
            + DA+  V    + +    +    +S  ++  +    +   +   +++      +A+  
Sbjct: 773 ALSDATGTVVIGGLMEHIEQAGV--HSGDSACSIPHTSLSASVLTTIRQWTVELAKALKV 830

Query: 241 RGISRSDFLFDPLSRKVFWLEINV 264
            G+   +  +      V+ LE N 
Sbjct: 831 IGL--MNIQYAVQGETVYILEANP 852


>gi|149376836|ref|ZP_01894592.1| acetyl-CoA carboxylase, biotin carboxylase [Marinobacter algicola
           DG893]
 gi|149358843|gb|EDM47311.1| acetyl-CoA carboxylase, biotin carboxylase [Marinobacter algicola
           DG893]
          Length = 448

 Score = 82.1 bits (202), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 76/217 (35%), Gaps = 18/217 (8%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-----ILV 113
           +G   E+      +E     +         L  +K+ +   + + GVP  P         
Sbjct: 84  YGFLAENADFAEQVEKSGFRFIGPRADTIRLMGNKVSAINSMIAAGVPTVPGSDGPLTDD 143

Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQLLIE 169
           +  T++    I  P +IK   GG   G+ V+  + ++   +  + S          + +E
Sbjct: 144 DNRTLEIARKIGYPVIIKAASGGGGRGMQVVHSEAALLKSVQVTQSEAKNSFGDATVYLE 203

Query: 170 QYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEV 227
           +Y++    +   V+ D   +V              ++          PA  I  +  ++ 
Sbjct: 204 KYLERPRHVEVQVLADTHGNVI-----HLGDRDCSMQRRHQKVIEEAPAPNIDPEAREKT 258

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +    A + IG  G    +FL+       +++E+N 
Sbjct: 259 LKACVDACKEIGYVGAGTFEFLY--QDGAFYFIEMNT 293


>gi|157692158|ref|YP_001486620.1| pyruvate carboxylase [Bacillus pumilus SAFR-032]
 gi|157680916|gb|ABV62060.1| pyruvate carboxylase [Bacillus pumilus SAFR-032]
          Length = 1148

 Score = 82.1 bits (202), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 30/221 (13%), Positives = 80/221 (36%), Gaps = 20/221 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+       E   I +         +  DK+++++     G+PV P    
Sbjct: 82  AIHPGYGFLSENIHFARRCEEEGIQFIGPTSQHLDMFGDKVKAREEAKKAGIPVIPGSDG 141

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
            +   +           P++IK   GG   G+ +++  + +         ++ +    D+
Sbjct: 142 PVNSVKEVEKFGEEYGYPFIIKASLGGGGRGMRIVRTKEELKEAYDRAKSEAKAAFGNDE 201

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDI 223
           + +E+ ++    +   V+GD   ++  +           ++        V P   +   +
Sbjct: 202 VYVEKLIENPKHIEVQVIGDNHGNIIHLYE-----RDCSVQRRHQKVIEVAPSVSLTDQL 256

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +++   A    Q +        +FL    + + +++E+N 
Sbjct: 257 REDICEAAVQLAQNVSYINAGTVEFLV--ANGEFYFIEVNP 295


>gi|8886467|gb|AAF80468.1|AF163149_1 acetyl-CoA carboxylase [Glycine max]
 gi|2253384|gb|AAC02267.1| biotin carboxylase precursor [Glycine max]
          Length = 539

 Score = 82.1 bits (202), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 80/220 (36%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
           +LH  +G   E+ +   +     I +      +  +  DK  +++ +   GVP  P    
Sbjct: 147 MLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRVMGDKATARETMKKAGVPTVPGSDG 206

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS----IPLDLLQSSSWNHGDQ 165
            +      +   + I  P +IK   GG   G+ + K+       +     ++++    D 
Sbjct: 207 LLQSTEEAIRLANEIGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDG 266

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+Y+ +   +   V+ D   +V               K             +  ++ 
Sbjct: 267 VYLEKYIQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLL----EEAPSPALTPELR 322

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K +   A  A  +IG  G+   +FL D      +++E+N 
Sbjct: 323 KAMGDAAVAAAASIGYIGVGTIEFLLDER-GSFYFMEMNT 361


>gi|99081359|ref|YP_613513.1| acetyl-CoA carboxylase biotin carboxylase subunit [Ruegeria sp.
           TM1040]
 gi|99037639|gb|ABF64251.1| acetyl-CoA carboxylase biotin carboxylase [Ruegeria sp. TM1040]
          Length = 449

 Score = 82.1 bits (202), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 33/220 (15%), Positives = 73/220 (33%), Gaps = 18/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---- 109
            +H  +G   E+     I+E   + +            DK+ +K    + G+P  P    
Sbjct: 77  AIHPGYGFLSENANFVQIVEDHGLTFIGPSAEHIRQMGDKITAKDTAKALGIPCVPGSDG 136

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
            +            +  P +IK   GG   G+ V + +  +         ++ +    D+
Sbjct: 137 GVPDVETAKKVAAEMGYPVIIKATAGGGGRGMKVAQTEADLVQAFQTARSEAKAAFGNDE 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+Y+     +   V GD       +            K             I  +  
Sbjct: 197 VYMEKYLQRPRHIEIQVFGDGKGGGVHLGERDCSLQRRHQKVF----EEAPGPCITEEER 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            ++ ++   A   +G  G    +FL+     + +++E+N 
Sbjct: 253 AKIGKICADAIGKMGYSGAGTVEFLY--EDGEFYFIEMNT 290


>gi|163736134|ref|ZP_02143553.1| acetyl-CoA carboxylase, biotin carboxylase [Phaeobacter
           gallaeciensis BS107]
 gi|161390004|gb|EDQ14354.1| acetyl-CoA carboxylase, biotin carboxylase [Phaeobacter
           gallaeciensis BS107]
          Length = 450

 Score = 82.1 bits (202), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 71/220 (32%), Gaps = 18/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---- 109
            +H  +G   E+     I+E   + +         +  DK+ +K  +   GVP  P    
Sbjct: 77  AIHPGYGFLSENANFVQIVEDHGLTFIGPTAEHIRVMGDKITAKDTMKDLGVPCVPGSDG 136

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
            +            I  P +IK   GG   G+ V K    +    + + +        D+
Sbjct: 137 GVPDLETAKKIGEDIGYPVIIKATAGGGGRGMKVAKTAADMEQAFMTARAEGKAAFGNDE 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+Y+     +   V GD       +            K             I  +  
Sbjct: 197 VYIEKYLTTPRHIEIQVFGDGKGKAVHLGERDCSLQRRHQKVF----EEAPGPCITPEER 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             + +    A   I   G    +FL++    + +++E+N 
Sbjct: 253 ARIGKTCAEAVAKINYIGAGTIEFLYEK--GEFYFIEMNT 290


>gi|163741336|ref|ZP_02148728.1| acetyl-CoA carboxylase [Phaeobacter gallaeciensis 2.10]
 gi|161385689|gb|EDQ10066.1| acetyl-CoA carboxylase [Phaeobacter gallaeciensis 2.10]
          Length = 450

 Score = 82.1 bits (202), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 71/220 (32%), Gaps = 18/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---- 109
            +H  +G   E+     I+E   + +         +  DK+ +K  +   GVP  P    
Sbjct: 77  AIHPGYGFLSENANFVQIVEDHGLTFIGPTAEHIRVMGDKITAKDTMKDLGVPCVPGSDG 136

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
            +            I  P +IK   GG   G+ V K    +    + + +        D+
Sbjct: 137 GVPDLETAKKIGEDIGYPVIIKATAGGGGRGMKVAKTAADMEQAFMTARAEGKAAFGNDE 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+Y+     +   V GD       +            K             I  +  
Sbjct: 197 VYIEKYLTTPRHIEIQVFGDGKGKAVHLGERDCSLQRRHQKVF----EEAPGPCITPEER 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             + +    A   I   G    +FL++    + +++E+N 
Sbjct: 253 ARIGKTCAEAVAKINYIGAGTIEFLYEK--GEFYFIEMNT 290


>gi|326792120|ref|YP_004309941.1| acetyl-CoA carboxylase, biotin carboxylase [Clostridium lentocellum
           DSM 5427]
 gi|326542884|gb|ADZ84743.1| acetyl-CoA carboxylase, biotin carboxylase [Clostridium lentocellum
           DSM 5427]
          Length = 456

 Score = 82.1 bits (202), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 41/220 (18%), Positives = 83/220 (37%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            LH  FG   E+     I E   I +         L  DK ++++++ + GVPV P    
Sbjct: 77  ALHPGFGFLSENAKFAEICEKCGITFIGPTGEMIRLMGDKAKAREMMIAAGVPVVPGSEG 136

Query: 114 NRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
               ++        I  P ++K   GG   G+ ++ K +      L +SS          
Sbjct: 137 KIDDLEEAMCLADRIGYPVILKAAAGGGGRGMRIVWKKEEFEKAFLSASSEAENAFGDGS 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+Y+ +   +   ++ DA  +V  +            K             +  D+ 
Sbjct: 197 MYLEKYIQNPRHIEFQILSDAYGNVVHLGERDCSLQRRHQK----VMEEAPSPFLNNDMR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K +  +A  A +A+  +     +F+ D    + +++E+N 
Sbjct: 253 KRMGEIAVTAAKAVNYQNAGTIEFIVDAS-GEFYFIEMNT 291


>gi|161344753|ref|NP_442333.2| carbamoyl phosphate synthase large subunit [Synechocystis sp. PCC
           6803]
 gi|22095495|sp|Q55756|CARB_SYNY3 RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
          Length = 1081

 Score = 82.1 bits (202), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 52/279 (18%), Positives = 106/279 (37%), Gaps = 36/279 (12%)

Query: 18  SGKACASALEDAGFKVSQID---------------------VDRSVGLVLAHLKPDLAFN 56
           SG     AL++ G++V  ++                     +   V  ++   +PD    
Sbjct: 29  SGTQACKALKEEGYEVVLVNSNPASIMTDPELADRTYIEPLIPEIVEKIIEKERPDAVLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  V      +LE   +    + + A  +  D+   K+ ++  GVPVCPS +
Sbjct: 89  TMGGQTALNLAVSLSKSGVLEKYGVELIGAKLPAIEMGEDRELFKEAMARIGVPVCPSGI 148

Query: 113 ---VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
              +      +  + S P +I+P    +  G  +    +     +      +   Q+L+E
Sbjct: 149 ASSIEEARQVAHEIGSYPLIIRPAFTLAGTGGGIAYNQEEYEEMVQYGLDQSPMSQILVE 208

Query: 170 QYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKE 226
           + + G  E    VM D + +V  I   ++    ++       +S  V PA+ +    Y+ 
Sbjct: 209 KSLLGWKEYELEVMRDLADNVVIICSIEN----FDPMGVHTGDSITVAPAQTLTDKEYQR 264

Query: 227 VQRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           ++  +    + IG   G S   F  +P +  V  +E+N 
Sbjct: 265 LRDYSIAIIREIGVETGGSNIQFSVNPANGDVIVIEMNP 303



 Score = 54.4 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/205 (13%), Positives = 81/205 (39%), Gaps = 13/205 (6%)

Query: 68  VQAILELLEIPYT----HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--Q 121
           +Q  L   + P       +   +   + D+ R ++++    +   P+ +   +       
Sbjct: 653 LQKYLNSPDCPVQTKIWGTSPDSIDTAEDRERFEKILHELEISQPPNGIARDYEESRVVA 712

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCG 180
           + IS P V++P        + ++  D+ +   +  +        +LI+++++  IE+   
Sbjct: 713 NRISYPVVVRPSYVLGGRAMEIVYSDEELERYMTYAVQIEPDHPILIDKFLENAIEVDVD 772

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIG 239
            + D++  V   ++ +   +  E    S +S   +P   +  ++   +++      +A+ 
Sbjct: 773 SLTDSTGKVVIGSIME---HIEEAGIHSGDSACSIPYTSLSDNVLTTIRQWTEQLARALN 829

Query: 240 CRGISRSDFLFDPLSRKVFWLEINV 264
             G+   +  +     +V+ LE N 
Sbjct: 830 VVGL--MNIQYAVQGDQVYILEANP 852


>gi|328945004|gb|EGG39161.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus sanguinis
           SK1087]
          Length = 455

 Score = 82.1 bits (202), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 77/220 (35%), Gaps = 16/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  FG   E+     + E + I +         L  DK+ ++  +    VPV P    
Sbjct: 77  AIHPGFGFLSENSKFATMCEEVGIKFIGPSGAVMDLMGDKINARAQMIKAKVPVIPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
            +  +   ++    I  P ++K   GG   GI  ++K + +         ++ +      
Sbjct: 137 EVHTSEEALEVAEKIGYPVMLKASAGGGGKGIRKVEKAEDLVAAFESASSEAKAAFGNGA 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+ +     +   ++ D    V  +            K             I   + 
Sbjct: 197 MYMERVIYPARHIEVQILADQQGHVIHLGERDCSLQRNNQKVL----EESPSVAIGKTLR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +++   A  A Q++G       +FL D    + +++E+N 
Sbjct: 253 QQIGEAAVRAAQSVGYENAGTIEFLLDEAKGEFYFMEMNT 292


>gi|311070461|ref|YP_003975384.1| hypothetical protein BATR1942_17680 [Bacillus atrophaeus 1942]
 gi|310870978|gb|ADP34453.1| hypothetical protein BATR1942_17680 [Bacillus atrophaeus 1942]
          Length = 416

 Score = 82.1 bits (202), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 46/233 (19%), Positives = 94/233 (40%), Gaps = 26/233 (11%)

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKP 132
           E L + +  S +   A+  +K  ++QV+    +       ++         +  P V+KP
Sbjct: 95  EELGLRHLPSQV--IAICRNKYATRQVLKRHQLNTPFFYEISSAADIDAGGLRYPLVVKP 152

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ---------LLIEQYVDGIEL---TCG 180
           + G SS G++ +     +   + +  + N GD          +++EQ++DG E    T  
Sbjct: 153 INGFSSQGVVRVNDQDQLKEAISKVEAINQGDLGKFIQGNSGIIVEQFIDGPEFVIETMS 212

Query: 181 VMGD-ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
           + G    L +      K  F+            ++ PA++  +    +      A  A+G
Sbjct: 213 IQGKVHVLSIGYKGDCKGPFF--------EEGVYIAPARLEEESRLAITEEVRKAVSALG 264

Query: 240 C-RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
              G + ++   D  S K F +E+  + G + +S F  +    G +F EL++ 
Sbjct: 265 IDNGAAHTELRLD-QSGKPFVIEVAPRIGGSGISHF-IVKESTGVNFMELIIR 315


>gi|300855697|ref|YP_003780681.1| carbamoyl-phosphate synthase large chain [Clostridium ljungdahlii
           DSM 13528]
 gi|300435812|gb|ADK15579.1| carbamoyl-phosphate synthase large chain [Clostridium ljungdahlii
           DSM 13528]
          Length = 1068

 Score = 82.1 bits (202), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 48/268 (17%), Positives = 103/268 (38%), Gaps = 40/268 (14%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGE--DGLV----- 68
           A++ AG++   I         D D S  L    L  D   NV+     E  DG++     
Sbjct: 580 AIKKAGYEAIIINNNPETVSTDFDISDKLYFEPLYIDDVMNVI---NEEKVDGVIVQFGG 636

Query: 69  QAILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGV--PVCPSILVNRFTMDS 120
           Q  L L        +    +   +  L+ D+ + + ++    +  PV  S+       + 
Sbjct: 637 QTALNLSKKLNDRGVNLLGTSFESIDLAEDREKFRVLLKELDINSPVGGSVTSLEEADNL 696

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +++P        + V+   + +   L  + + +    +L+++Y+ G E+   
Sbjct: 697 VAEIGYPVIVRPSYVIGGRAMKVVYNYEELCKYLKDAVNLSKEHPVLVDKYIVGKEIEVD 756

Query: 181 VMGDAS---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQ 236
            + D     +      + K+  +S        +S  V PA  +P ++ K+++       +
Sbjct: 757 AISDGEDLIIPGIMEHIEKTGVHS-------GDSIAVYPASDLPENVLKKIEDYTVKIAK 809

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +  +G+    + FD    KV+ +E+N 
Sbjct: 810 KLNVKGLLNVQYAFD--GDKVYVIEVNP 835



 Score = 40.5 bits (94), Expect = 0.33,   Method: Composition-based stats.
 Identities = 41/276 (14%), Positives = 94/276 (34%), Gaps = 32/276 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     A++  G +   ++ +                      S+  ++   KPD    
Sbjct: 29  SGTQACEAIKKEGIQTVLVNSNPATIMTDKNIADKTYIEPLTVESLEAIIGREKPDGVLA 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
              G    +  ++     + +   +        +   + D+   K +++    P+  S +
Sbjct: 89  GFGGQTALNLAMELNEIGVFKKYNVELLGIKTESIKNAEDRESFKNLMNEIDEPIAVSEI 148

Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                   +  + +S P +I+P       G  +    +            +  +Q+L+EQ
Sbjct: 149 ATNLEECKKFLNKVSLPIIIRPAYTLGGTGGGIASTYEEYMEICENGLEESPINQILLEQ 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQ 228
            + G  EL   +M D   +   + V   +     +   + +S  V P++ +    Y+ ++
Sbjct: 209 SLAGWKELEYEIMRDKKDN--CMVVCNMENLD-PVGIHTGDSIVVAPSQTLNDREYQMLR 265

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           R A    + +   G     F  DP S +   +E+N 
Sbjct: 266 RSAIKIIRTLKIEGGCNIQFALDPNSNRYMVIEVNP 301


>gi|295703118|ref|YP_003596193.1| urea carboxylase [Bacillus megaterium DSM 319]
 gi|294800777|gb|ADF37843.1| urea carboxylase [Bacillus megaterium DSM 319]
          Length = 1203

 Score = 82.1 bits (202), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 37/255 (14%), Positives = 90/255 (35%), Gaps = 30/255 (11%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       +   I +         +   K  ++++     VP+ P   +
Sbjct: 77  AIHPGYGFLSENAEFARRCQAEGIVFIGPTPQQMEIFGLKHSAREIAQKADVPLLPGTPL 136

Query: 114 NRFTMDS---QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQL 166
                ++      I  P ++K   GG  +G+ V + ++++          + +      +
Sbjct: 137 ITDVSEAVCAAEEIGYPVMLKSTAGGGGIGMRVCQDEKALQAAFDSVCHLAQTNFKNSGV 196

Query: 167 LIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
            +E+Y+     +   + G++  +V  +            K              P  I +
Sbjct: 197 FLEKYIQKARHVEVQIFGNSFGEVVALGERDCSIQRRNQK----VIEESPAPNFPSYIRE 252

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285
            + + A    + +G R     +FL+D  + K ++LE+N             +    G + 
Sbjct: 253 NMLQAATRLAKEVGYRSAGTVEFLYDAEAEKFYFLEVNT-----------RLQVEHGVTE 301

Query: 286 R----ELLLWMVEDA 296
                +L+ WM+++A
Sbjct: 302 EVLNVDLVEWMLKEA 316


>gi|239941426|ref|ZP_04693363.1| putative acetyl/propionyl CoA carboxylase alpha subunit
           [Streptomyces roseosporus NRRL 15998]
 gi|239987891|ref|ZP_04708555.1| putative acetyl/propionyl CoA carboxylase alpha subunit
           [Streptomyces roseosporus NRRL 11379]
          Length = 652

 Score = 82.1 bits (202), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 85/221 (38%), Gaps = 17/221 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---- 109
            +H  +G   E+           + +      A AL  DK+R+K+ V++ GVPV P    
Sbjct: 80  AVHPGYGFLAENAEFAQACADAGLVFIGPPAAAIALMGDKIRAKETVAAYGVPVVPGSSG 139

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
           S L +    ++   I  P ++KP  GG   G+ +++    +  ++  +          D 
Sbjct: 140 SGLTDAQLEEAAREIGTPVLLKPSAGGGGKGMRLVRDAAVLGEEIAAARREARASFGDDT 199

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           LL+E+++D    +   V+ DA  +V  +   +        K             +  +  
Sbjct: 200 LLVERWIDRPRHIEIQVLADAHGNVIHLGERECSLQRRHQKII----EEAPSVLLDEETR 255

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLS-RKVFWLEINV 264
             +   A  A ++ G  G    +F+         +++E+N 
Sbjct: 256 AAMGEAAVQAARSCGYVGAGTVEFIVPGNDPASYYFMEMNT 296


>gi|199598366|ref|ZP_03211785.1| Carbamoylphosphate synthase large subunit [Lactobacillus rhamnosus
           HN001]
 gi|258508451|ref|YP_003171202.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus
           rhamnosus GG]
 gi|199590685|gb|EDY98772.1| Carbamoylphosphate synthase large subunit [Lactobacillus rhamnosus
           HN001]
 gi|257148378|emb|CAR87351.1| Carbamoyl-phosphate synthase, large subunit [Lactobacillus
           rhamnosus GG]
 gi|259649764|dbj|BAI41926.1| carbamoylphosphate synthase large subunit [Lactobacillus rhamnosus
           GG]
          Length = 1060

 Score = 82.1 bits (202), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 53/286 (18%), Positives = 102/286 (35%), Gaps = 33/286 (11%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI---------DVD------------RSVGLV 45
           G ++E + S   G     AL + G++V  +         D +              V  +
Sbjct: 21  GQAAEFDYS---GTQACLALREEGYEVVLVNSNPATIMTDTEIADRVYIEPLTVEFVSQI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           L    PD     + G  G +  ++     IL+ L I    + + A   + D+   K ++ 
Sbjct: 78  LRKELPDAILPTIGGQIGLNLAMKLSNTGILDELGIELLGTKLSAIDQAEDRELFKNLMQ 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
               PV  S + N  +   +    I  P +I+P       G  +   ++ +        +
Sbjct: 138 KLHEPVPESAIANNVQEAQEFADKIGFPVIIRPAFTMGGTGGGIADNEKELAEIAENGLN 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   Q+LIE+ + G  E+   VM DAS     I V   + +     ++  +        
Sbjct: 198 LSPVTQVLIERSIAGYKEIEFEVMRDASDSA--IVVCNMENFDPVGVHTGDSMVFAPTQT 255

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +     + ++  A    +A+   G     F  D  S K + +E+N 
Sbjct: 256 LTDKEVQMLRDSALKIIRALKIEGGCNVQFALDRNSFKYYVIEVNP 301



 Score = 80.2 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 30/195 (15%), Positives = 67/195 (34%), Gaps = 15/195 (7%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQHLISPPYVIKPL 133
            I    + +     + D+    QV+    +P             +     I  P +++P 
Sbjct: 650 GIKILGTSVADLNRAEDRDLFDQVIKELKLPQPEGGTATDKDGALAVADKIGYPVLVRPS 709

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS---LDVT 190
                  + ++     +   + ++ S +H   +LI+ Y+ G E     + D     L   
Sbjct: 710 YVLGGRAMEIVHNADELASYIDRAVSVSHDHPVLIDHYLVGKECEVDCISDGETVVLPGI 769

Query: 191 EIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
              + ++  +S        +S  V P +    DI  ++        +A+ C G+    F+
Sbjct: 770 MEHIERAGIHS-------GDSMAVYPPQTFSQDIIDQITDATIKLSRALNCIGLMNVQFI 822

Query: 250 FDPLSRKVFWLEINV 264
                 K + +E+N 
Sbjct: 823 IHQ--GKAYVIEVNP 835


>gi|300214099|gb|ADJ78515.1| Carbamoyl-phosphate synthase large chain (Carbamoyl-phosphate
           synthetase ammonia chain) [Lactobacillus salivarius CECT
           5713]
          Length = 1061

 Score = 82.1 bits (202), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 58/314 (18%), Positives = 112/314 (35%), Gaps = 37/314 (11%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI---------DVD------------RSVGLV 45
           G ++E + S   G     AL + G++V  +         D +             SV  +
Sbjct: 21  GQAAEFDYS---GTQACLALREEGYEVVLVNSNPATIMTDTEIADKVYIEPLTVESVSRI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +    PD     L G  G +  +      ILE L I    + + A   + D+ R K ++ 
Sbjct: 78  IRQEFPDAILPTLGGQIGLNLAIALAKTGILEELGIKLLGTQLDAIDQAEDRQRFKDLMQ 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
               PV  S  V   +  +D    I  P +++P       G  +    + +   +     
Sbjct: 138 ELNEPVPDSKTVETVQEALDFAAEIGYPVIVRPAFTMGGTGGGLCDNPEQLKEIVANGLE 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   Q LIE+ + G  E+   VM DA  +   + V   + +     ++  +        
Sbjct: 198 LSPATQCLIEKSIMGYKEIEFEVMRDADNNA--MVVCSMENFDPVGIHTGDSIVFAPTQT 255

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278
           +    Y+ ++  +    +A+   G        DP S + + +E+N  P ++  S     +
Sbjct: 256 LSDREYQMLRNCSLKLIRALKIEGGCNVQLALDPNSYRYYVIEVN--PRVSRSS--ALAS 311

Query: 279 AYAGYSFRELLLWM 292
              GY   +L   +
Sbjct: 312 KATGYPIAKLAAKI 325



 Score = 81.3 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 36/232 (15%), Positives = 85/232 (36%), Gaps = 19/232 (8%)

Query: 68  VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV--PVCPSILVNRFTMDSQHLIS 125
           + A LE   +    + +     + D+    Q + S G+  P+  +       +     I 
Sbjct: 642 LAAGLEAHGVKILGTTVEDLDRAEDRELFDQTIKSLGLKQPIGKTATTQEQVIACAEEIG 701

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            P +++P        + ++  +Q +   L Q++       +L++ Y+ G+E     + D 
Sbjct: 702 YPVLVRPSYVLGGRAMEIVNNEQELLDYLAQNAPAEIDHPILVDAYLSGLECEVDAICDG 761

Query: 186 S---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCR 241
               L      +  +  +S        +S  V P +    +I +++         A+ C 
Sbjct: 762 KDVLLPGIMEHIEHAGVHS-------GDSMAVYPPQSFDENIKQQIVDATEKLAVALKCV 814

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           GI    F+    + + + LE+N +   T     P ++   G    ++   ++
Sbjct: 815 GIMNIQFIIH--NNEAYVLEVNPRASRT----VPFLSKITGIEMAQVATRVI 860


>gi|159027682|emb|CAO89547.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 1081

 Score = 82.1 bits (202), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 55/279 (19%), Positives = 103/279 (36%), Gaps = 36/279 (12%)

Query: 18  SGKACASALEDAGFKVSQID------------VDRS---------VGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++             DR+         V  ++   +PD    
Sbjct: 29  SGTQACKALREEGYEVILVNSNPASIMTDPEMADRTYIEPILPEIVEKIIEKERPDAILP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  V      +LE   +    + + A   + D+   K+ +   GVPVCPS +
Sbjct: 89  TMGGQTALNTAVALAKSGVLEKYNVELIGAKLPAIEKAEDRELFKKAMEKIGVPVCPSGI 148

Query: 113 VNRFTMDSQ---HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            N           + S P +I+P       G  +    +            +   Q+L+E
Sbjct: 149 ANNLEEAKAIGHQIGSYPLIIRPAFTLGGTGGGIAYNQEEFEPMAQYGLDCSPTSQILVE 208

Query: 170 QYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKE 226
           + + G  E    VM D + +V  I   ++    ++       +S  V PA+ +    Y+ 
Sbjct: 209 KSLIGWKEYELEVMRDLADNVVIICSIEN----FDAMGVHTGDSITVAPAQTLTDKEYQR 264

Query: 227 VQRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           ++  +    + IG   G S   F  +P +  V  +E+N 
Sbjct: 265 LRDYSKAIIREIGVETGGSNIQFSVNPTNGDVIVIEMNP 303



 Score = 54.0 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 27/204 (13%), Positives = 73/204 (35%), Gaps = 11/204 (5%)

Query: 68  VQAILELLEIPYT----HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQ 121
           +Q  LE    P       +   +   + D+ R +Q++    +    + +   F       
Sbjct: 653 LQKYLESPNCPVNTKIWGTSPDSIDTAEDRERFEQILRQLDIRQPANGIARSFQESQAVA 712

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCG 180
             I  P V++P        + ++  D  +   +  +        +LI+++++  IE+   
Sbjct: 713 KRIGYPVVVRPSYVLGGRAMEIVYSDSELERYMKYAVQIEPDHPILIDKFLENAIEVDVD 772

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
            + DA+  V    + +    +    +S  ++  +    +   +   +++      +A+  
Sbjct: 773 ALSDATETVVIGGLMEHIEQAGV--HSGDSACSIPHTSLSASVLTTIRQWTVELAKALKV 830

Query: 241 RGISRSDFLFDPLSRKVFWLEINV 264
            G+   +  +      V+ LE N 
Sbjct: 831 IGL--MNIQYAVQGETVYILEANP 852


>gi|126461534|ref|YP_001042648.1| pyruvate carboxylase [Rhodobacter sphaeroides ATCC 17029]
 gi|126103198|gb|ABN75876.1| pyruvate carboxylase [Rhodobacter sphaeroides ATCC 17029]
          Length = 1154

 Score = 82.1 bits (202), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 74/221 (33%), Gaps = 18/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       +   I +            DK  +++V  + GVPV P+  V
Sbjct: 80  AIHPGYGLLSENPDFVEACDAAGIAFIGPKAETMRALGDKASARRVAMAAGVPVIPATEV 139

Query: 114 NRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGDQ 165
               M+        I  P ++K   GG   G+  I  +  +   +     ++ +     +
Sbjct: 140 LGDDMEEIKRQAAEIGYPLMLKASWGGGGRGMRPITSEAELADKVREGRREAEAAFGNGE 199

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
             +E+ +     +   ++GD    +  +            K          PA  +  + 
Sbjct: 200 GYLEKMIQRARHVEVQILGDKYGAIYHLYERDCTVQRRNQK-----VVERAPAPYLTEEQ 254

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             E+  L       +        +FL D  S K +++E+N 
Sbjct: 255 RTEICELGRRICAHVNYECAGTVEFLMDMDSEKFYFIEVNP 295


>gi|315500876|ref|YP_004079763.1| carbamoyl-phosphate synthase l chain ATP-binding protein
           [Micromonospora sp. L5]
 gi|315407495|gb|ADU05612.1| Carbamoyl-phosphate synthase L chain ATP-binding protein
           [Micromonospora sp. L5]
          Length = 448

 Score = 82.1 bits (202), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 86/220 (39%), Gaps = 16/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      +E   + +   G  A +   DK+ ++ ++++ GVPV P    
Sbjct: 80  AIHPGYGFLSENADFARTVEGAGLIWVGPGADAISAMGDKINARNLMAAAGVPVAPGTTE 139

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
               +D    +   I  P ++K   GG  +G+ V   + ++  +  +  ++         
Sbjct: 140 PASDLDAAVAAAAEIGYPVMVKAAAGGGGMGMGVAADEAALRTEYDKVRAFAERMFGDGS 199

Query: 166 LLIEQ-YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           +LIE+ +     +   ++G A   V  +   +        K             +  ++ 
Sbjct: 200 VLIERYFPRVRHVEVQILGLADGRVVALGERECSVQRRNQK----LVEESPSPAVSPELR 255

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +     A  A +A+  R     + L DP +++ F+LE+N 
Sbjct: 256 ERFLAAAVRAGEAVNYRNAGTVECLLDPSTQEFFFLEMNT 295


>gi|90961175|ref|YP_535091.1| carbamoyl phosphate synthase large subunit [Lactobacillus
           salivarius UCC118]
 gi|122449391|sp|Q1WVA9|CARB_LACS1 RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|90820369|gb|ABD99008.1| Carbamoyl-phosphate synthase large chain [Lactobacillus salivarius
           UCC118]
          Length = 1061

 Score = 82.1 bits (202), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 58/314 (18%), Positives = 112/314 (35%), Gaps = 37/314 (11%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI---------DVD------------RSVGLV 45
           G ++E + S   G     AL + G++V  +         D +             SV  +
Sbjct: 21  GQAAEFDYS---GTQACLALREEGYEVVLVNSNPATIMTDTEIADKVYIEPLTVESVSRI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +    PD     L G  G +  +      ILE L I    + + A   + D+ R K ++ 
Sbjct: 78  IRQEFPDAILPTLGGQIGLNLAIALAKTGILEELGIKLLGTQLDAIDQAEDRQRFKDLMQ 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
               PV  S  V   +  +D    I  P +++P       G  +    + +   +     
Sbjct: 138 ELNEPVPDSKTVETVQEALDFAAEIGYPVIVRPAFTMGGTGGGLCDNPEQLKEIVANGLE 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   Q LIE+ + G  E+   VM DA  +   + V   + +     ++  +        
Sbjct: 198 LSPATQCLIEKSIMGYKEIEFEVMRDADNNA--MVVCSMENFDPVGIHTGDSIVFAPTQT 255

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278
           +    Y+ ++  +    +A+   G        DP S + + +E+N  P ++  S     +
Sbjct: 256 LSDREYQMLRNCSLKLIRALKIEGGCNVQLALDPNSYRYYVIEVN--PRVSRSS--ALAS 311

Query: 279 AYAGYSFRELLLWM 292
              GY   +L   +
Sbjct: 312 KATGYPIAKLAAKI 325



 Score = 79.0 bits (194), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 35/232 (15%), Positives = 85/232 (36%), Gaps = 19/232 (8%)

Query: 68  VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV--PVCPSILVNRFTMDSQHLIS 125
           + A LE   +    + +     + D+    Q + + G+  P+  +       +     I 
Sbjct: 642 LAAGLEAHSVKILGTTVEDLDRAEDRELFDQTIKNLGLKQPIGKTATTQEQVIACAEEIG 701

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            P +++P        + ++  +Q +   L Q++       +L++ Y+ G+E     + D 
Sbjct: 702 YPVLVRPSYVLGGRAMEIVNNEQELLDYLAQNAPAEIDHPILVDAYLSGLECEVDAICDG 761

Query: 186 S---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCR 241
               L      +  +  +S        +S  V P +    +I +++         A+ C 
Sbjct: 762 KDVLLPGIMEHIEHAGVHS-------GDSMAVYPPQSFDENIKQQIVDATEKLAVALKCV 814

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           GI    F+    + + + LE+N +   T     P ++   G    ++   ++
Sbjct: 815 GIMNIQFIIH--NNEAYVLEVNPRASRT----VPFLSKITGIEMAQVATRVI 860


>gi|332557524|ref|ZP_08411846.1| pyruvate carboxylase [Rhodobacter sphaeroides WS8N]
 gi|332275236|gb|EGJ20551.1| pyruvate carboxylase [Rhodobacter sphaeroides WS8N]
          Length = 1154

 Score = 82.1 bits (202), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 74/221 (33%), Gaps = 18/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       +   I +            DK  +++V  + GVPV P+  V
Sbjct: 80  AIHPGYGLLSENPDFVEACDAAGIAFIGPKAETMRALGDKASARRVAMAAGVPVIPATEV 139

Query: 114 NRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGDQ 165
               M+        I  P ++K   GG   G+  I  +  +   +     ++ +     +
Sbjct: 140 LGDDMEEIKRQAAEIGYPLMLKASWGGGGRGMRPITSEAELADKVREGRREAEAAFGNGE 199

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
             +E+ +     +   ++GD    +  +            K          PA  +  + 
Sbjct: 200 GYLEKMIQRARHVEVQILGDKYGAIYHLYERDCTVQRRNQK-----VVERAPAPYLTEEQ 254

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             E+  L       +        +FL D  S K +++E+N 
Sbjct: 255 RTEICELGRRICAHVNYECAGTVEFLMDMDSEKFYFIEVNP 295


>gi|303232062|ref|ZP_07318765.1| pyruvate carboxylase [Veillonella atypica ACS-049-V-Sch6]
 gi|302513168|gb|EFL55207.1| pyruvate carboxylase [Veillonella atypica ACS-049-V-Sch6]
          Length = 1148

 Score = 82.1 bits (202), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 96/278 (34%), Gaps = 28/278 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59
           +A+     S E  +SL   +A  + L   G K     +D   +  +      D     +H
Sbjct: 31  VAI----YSKEDTLSLHRNQADEAYLVGEGKKPVDAYLDIEDIIRIAKEHDID----AIH 82

Query: 60  GNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI--LVN 114
             +G   E+ +         I +    +    +  DK+ ++       +P+ P     + 
Sbjct: 83  PGYGFLSENEVFARRCGEEGIIFIGPHVEHLNMFGDKVNARTQAKLADIPMIPGSDGALR 142

Query: 115 RFTM--DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQLLI 168
            F    +       P +IK + GG   G+  + + + +         ++ +    D + +
Sbjct: 143 DFAQLEEFAETHGYPLMIKAVNGGGGRGMREVHRKEDLRDAYDRAKSEAKAAFGDDDVYV 202

Query: 169 EQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKE 226
           E+ + +   +   ++GD   +V              ++        + PA  +PL+  K 
Sbjct: 203 EKLIVEPKHIEVQILGDEHGNVV-----HLHERDCSVQRRHQKVVEMAPAFALPLETRKA 257

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           V   A    + +G       +FL        +++E+N 
Sbjct: 258 VCDAAVKIMKNVGYVNAGTVEFLVT-SDGSFYFIEVNP 294


>gi|302529953|ref|ZP_07282295.1| urea carboxylase [Streptomyces sp. AA4]
 gi|302438848|gb|EFL10664.1| urea carboxylase [Streptomyces sp. AA4]
          Length = 663

 Score = 82.1 bits (202), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 81/221 (36%), Gaps = 17/221 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+           + +      A     DK+R+K  VS+ GVPV P    
Sbjct: 79  AVHPGYGFLAENTAFARACAEAGLVFIGPPPEAIDKMGDKIRAKATVSAAGVPVVPGASD 138

Query: 112 --LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
             +      ++   +  P ++KP  GG   G+ ++ ++  +   +  +          D 
Sbjct: 139 VDIPEGGFAEAAAKVGYPLLLKPSAGGGGKGMRLVHEESELDAAIESARREAKSSFGDDT 198

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           LL+E++V     +   V+ DA   V  +   +        K             +     
Sbjct: 199 LLMERFVTTPRHIEIQVLADAHGTVLHLGERECSLQRRHQKII----EEAPSVLLDEATR 254

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLS-RKVFWLEINV 264
            ++   A  A +++G  G    +F+    +  + F++E+N 
Sbjct: 255 AKMGAAAAEAARSVGYVGAGTVEFIMSAHNPDEFFFMEMNT 295


>gi|71735342|ref|YP_274653.1| acetyl-CoA carboxylase biotin carboxylase subunit [Pseudomonas
           syringae pv. phaseolicola 1448A]
 gi|71555895|gb|AAZ35106.1| acetyl-CoA carboxylase, biotin carboxylase [Pseudomonas syringae
           pv. phaseolicola 1448A]
          Length = 450

 Score = 82.1 bits (202), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 84/221 (38%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---- 109
            +H  +G   E+      +E   + +         +  DK+ +K+ +   GVP  P    
Sbjct: 77  AIHPGYGFLSENAAFAERIEQAGLTFIGPSAACIRVMGDKVAAKRAMREAGVPCVPGPDT 136

Query: 110 SILVNR-FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGD 164
           S+  +    +     I  P ++K   GG   G+ V++++Q +   +     ++       
Sbjct: 137 SMPADPLGILKIARDIGYPVIVKAAGGGGGRGMRVVQEEQQLLDAIALTGEEARRAFGNP 196

Query: 165 QLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           +L IE+++     +   V+ DA  +   +            K             I  ++
Sbjct: 197 ELYIEKFLGQPRHVEIQVLCDAYGNAVWLGSRDCSMQRRHQKVL----EEAPAPGIDPEL 252

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              V     LA + IG +G+   +FLF   + + +++E+N 
Sbjct: 253 MARVGERCALACRQIGYQGVGTFEFLF--ENDEFYFIEMNT 291


>gi|300772083|ref|ZP_07081953.1| acetyl-CoA carboxylase subunit A [Sphingobacterium spiritivorum
           ATCC 33861]
 gi|300760386|gb|EFK57212.1| acetyl-CoA carboxylase subunit A [Sphingobacterium spiritivorum
           ATCC 33861]
          Length = 454

 Score = 82.1 bits (202), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 82/221 (37%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---S 110
            +H  +G   E+    AI     I +  +         DK  +K  +   GVP  P    
Sbjct: 77  AIHPGYGFLSENARFSAICAEYGIKFIGATAEQIEKMGDKSSAKATMKEAGVPTVPGSEG 136

Query: 111 ILVN-RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGD 164
           +L N +  +   + I  P +IK   GG   G+ +I KD+             ++++ +  
Sbjct: 137 LLSNVKEGIQLANEIGYPVIIKATAGGGGRGMRIIWKDEDFEAAWDSARQESAAAFGNDG 196

Query: 165 QLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            + +E+YV+    +   V+GD    V  ++           K             I  ++
Sbjct: 197 -IYLEKYVEEPRHIEIQVVGDQYGTVCHLSERDCSIQRRHQKLL----EEAPSPFITPEL 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +   A    +A+   G    +FL D   R  +++E+N 
Sbjct: 252 RQTMGEAAIKGAKAVNYEGAGTIEFLVDKH-RNFYFMEMNT 291


>gi|144900957|emb|CAM77821.1| urea amidolyase [Magnetospirillum gryphiswaldense MSR-1]
          Length = 1203

 Score = 82.1 bits (202), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 46/257 (17%), Positives = 88/257 (34%), Gaps = 32/257 (12%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-SIL 112
            +H  +G   E+           I +             K  ++ +     VP+ P S L
Sbjct: 77  AIHPGYGFLSENPDFAEECARAGIAFIGPWPEHMRAFGLKHTARDLAKKAKVPLAPGSGL 136

Query: 113 VNR--FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQL 166
           +N           I  P ++K   GG  +G+ + + +  +     +             L
Sbjct: 137 LNDVAHAKAEAKRIGYPVMLKSTAGGGGIGLSLCRGEAELEPLFERVQRLARNNFKDPGL 196

Query: 167 LIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIY 224
            +E+YV+ G  +   + GD   +V  +            +  +       PA  I   + 
Sbjct: 197 FLEKYVERGRHIEVQIFGDGKGNVVALGE-----RDCSAQRRNQKVVEETPAPGISPHLR 251

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAY 280
            ++   A    QA+G       +FL+D  + +  +LE+N +     G+T           
Sbjct: 252 HQLCETAVKLGQAVGYANAGTVEFLYDTDADEFHFLEVNTRLQVEHGVTE--------QV 303

Query: 281 AGYSFRELLLWMVEDAS 297
            G    +L+ WMV  A+
Sbjct: 304 TGI---DLVEWMVRQAA 317


>gi|33860620|ref|NP_892181.1| acetyl-CoA carboxylase biotin carboxylase subunit [Prochlorococcus
           marinus subsp. pastoris str. CCMP1986]
 gi|33633562|emb|CAE18519.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Prochlorococcus
           marinus subsp. pastoris str. CCMP1986]
          Length = 449

 Score = 82.1 bits (202), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 82/220 (37%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     +     I +      A     DK  +K+ +   GVP  P    
Sbjct: 77  AIHPGYGFLAENDKFAEMCNDHGITFIGPSPNAIRSMGDKSTAKETMERVGVPTVPGSKG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSWNHGDQ 165
            +       +    I  P +IK   GG   G+ +++   ++         ++ +    D 
Sbjct: 137 LLSSVEEAYEMAQEIGYPVIIKATAGGGGRGMRLVENKANLEKMFKAAQGEAEAAFGNDG 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           L +E+++     +   ++ D S +V  +        S + ++  L      PA I   + 
Sbjct: 197 LYMEKFIKKPRHVEIQILADRSGNVVHLGERD---CSVQRRHQKLLEESPSPA-INYSLR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K++   A  A ++I   G    +FL D      +++E+N 
Sbjct: 253 KKMGNAAIAAAKSISYEGAGTVEFLVD-DDNNFYFMEMNT 291


>gi|301299457|ref|ZP_07205733.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus
           salivarius ACS-116-V-Col5a]
 gi|300852939|gb|EFK80547.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus
           salivarius ACS-116-V-Col5a]
          Length = 1061

 Score = 82.1 bits (202), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 58/314 (18%), Positives = 112/314 (35%), Gaps = 37/314 (11%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI---------DVD------------RSVGLV 45
           G ++E + S   G     AL + G++V  +         D +             SV  +
Sbjct: 21  GQAAEFDYS---GTQACLALREEGYEVVLVNSNPATIMTDTEIADKVYIEPLTVESVSRI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +    PD     L G  G +  +      ILE L I    + + A   + D+ R K ++ 
Sbjct: 78  IRQEFPDAILPTLGGQIGLNLAIALAKTGILEELGIKLLGTQLDAIDQAEDRQRFKDLMQ 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
               PV  S  V   +  +D    I  P +++P       G  +    + +   +     
Sbjct: 138 ELNEPVPDSKTVETVQEALDFAAEIGYPVIVRPAFTMGGTGGGLCDNPEQLKEIVANGLE 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   Q LIE+ + G  E+   VM DA  +   + V   + +     ++  +        
Sbjct: 198 LSPATQCLIEKSIMGYKEIEFEVMRDADNNA--MVVCSMENFDPVGIHTGDSIVFAPTQT 255

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278
           +    Y+ ++  +    +A+   G        DP S + + +E+N  P ++  S     +
Sbjct: 256 LSDREYQMLRNCSLKLIRALKIEGGCNVQLALDPNSYRYYVIEVN--PRVSRSS--ALAS 311

Query: 279 AYAGYSFRELLLWM 292
              GY   +L   +
Sbjct: 312 KATGYPIAKLAAKI 325



 Score = 81.3 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/232 (15%), Positives = 85/232 (36%), Gaps = 19/232 (8%)

Query: 68  VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV--PVCPSILVNRFTMDSQHLIS 125
           + A LE   +    + +     + D+    Q + S G+  P+  +       +     I 
Sbjct: 642 LAAGLEAHGVKILGTTVEDLDRAEDRELFDQTIKSLGLKQPIGKTATTQEQVIACAEEIG 701

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            P +++P        + ++  +Q +   L Q++       +L++ Y+ G+E     + D 
Sbjct: 702 YPVLVRPSYVLGGRAMEIVNNEQELLDYLAQNAPAEIDHPILVDAYLSGLECEVDAICDG 761

Query: 186 S---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCR 241
               L      +  +  +S        +S  V P +    +I +++         A+ C 
Sbjct: 762 KDVLLPGIMEHIEHAGVHS-------GDSMAVYPPQSFDENIKQQIVDATEKLAVALKCV 814

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           GI    F+    + + + LE+N +   T     P ++   G    ++   ++
Sbjct: 815 GIMNIQFIIH--NNEAYVLEVNPRASRT----VPFLSKITGIEMAQVATRVI 860


>gi|146283594|ref|YP_001173747.1| acetyl-CoA carboxylase biotin carboxylase subunit [Pseudomonas
           stutzeri A1501]
 gi|145571799|gb|ABP80905.1| biotin carboxylase [Pseudomonas stutzeri A1501]
 gi|327481989|gb|AEA85299.1| acetyl-CoA carboxylase biotin carboxylase subunit [Pseudomonas
           stutzeri DSM 4166]
          Length = 449

 Score = 82.1 bits (202), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 36/217 (16%), Positives = 75/217 (34%), Gaps = 18/217 (8%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI--LVNRF 116
           +G   E+      +E     +         L  DK+ +K  +   GVP  P     +   
Sbjct: 82  YGFLAENADFAEQVEKSGFTFIGPTADVIRLMGDKVSAKDAMKQAGVPTVPGSDGPLPED 141

Query: 117 TMDS---QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQLLIE 169
             ++      +  P +IK   GG   G+ V+ K++ +         ++ +      + +E
Sbjct: 142 EKEALRIAREVGYPVIIKAAGGGGGRGMRVVHKEEDLIASAKLTRNEAGAAFGNPMVYLE 201

Query: 170 QYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEV 227
           +++     +   V+ D   +               L+          PA +   +  ++V
Sbjct: 202 KFLTNPRHVEIQVLADGQGNAI-----HLGDRDCSLQRRHQKVIEEAPAPLIDEEARRKV 256

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           Q     A   IG RG    +FL+       +++E+N 
Sbjct: 257 QARCVKACIDIGYRGAGTFEFLY--EDGNFYFIEMNT 291


>gi|1001668|dbj|BAA10403.1| carbamoyl-phosphate synthase, pyrimidine-specific, large chain
           [Synechocystis sp. PCC 6803]
          Length = 1105

 Score = 82.1 bits (202), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 52/279 (18%), Positives = 106/279 (37%), Gaps = 36/279 (12%)

Query: 18  SGKACASALEDAGFKVSQID---------------------VDRSVGLVLAHLKPDLAFN 56
           SG     AL++ G++V  ++                     +   V  ++   +PD    
Sbjct: 53  SGTQACKALKEEGYEVVLVNSNPASIMTDPELADRTYIEPLIPEIVEKIIEKERPDAVLP 112

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  V      +LE   +    + + A  +  D+   K+ ++  GVPVCPS +
Sbjct: 113 TMGGQTALNLAVSLSKSGVLEKYGVELIGAKLPAIEMGEDRELFKEAMARIGVPVCPSGI 172

Query: 113 ---VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
              +      +  + S P +I+P    +  G  +    +     +      +   Q+L+E
Sbjct: 173 ASSIEEARQVAHEIGSYPLIIRPAFTLAGTGGGIAYNQEEYEEMVQYGLDQSPMSQILVE 232

Query: 170 QYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKE 226
           + + G  E    VM D + +V  I   ++    ++       +S  V PA+ +    Y+ 
Sbjct: 233 KSLLGWKEYELEVMRDLADNVVIICSIEN----FDPMGVHTGDSITVAPAQTLTDKEYQR 288

Query: 227 VQRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           ++  +    + IG   G S   F  +P +  V  +E+N 
Sbjct: 289 LRDYSIAIIREIGVETGGSNIQFSVNPANGDVIVIEMNP 327



 Score = 54.4 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/205 (13%), Positives = 81/205 (39%), Gaps = 13/205 (6%)

Query: 68  VQAILELLEIPYT----HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--Q 121
           +Q  L   + P       +   +   + D+ R ++++    +   P+ +   +       
Sbjct: 677 LQKYLNSPDCPVQTKIWGTSPDSIDTAEDRERFEKILHELEISQPPNGIARDYEESRVVA 736

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCG 180
           + IS P V++P        + ++  D+ +   +  +        +LI+++++  IE+   
Sbjct: 737 NRISYPVVVRPSYVLGGRAMEIVYSDEELERYMTYAVQIEPDHPILIDKFLENAIEVDVD 796

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIG 239
            + D++  V   ++ +   +  E    S +S   +P   +  ++   +++      +A+ 
Sbjct: 797 SLTDSTGKVVIGSIME---HIEEAGIHSGDSACSIPYTSLSDNVLTTIRQWTEQLARALN 853

Query: 240 CRGISRSDFLFDPLSRKVFWLEINV 264
             G+   +  +     +V+ LE N 
Sbjct: 854 VVGL--MNIQYAVQGDQVYILEANP 876


>gi|298291314|ref|YP_003693253.1| acetyl-CoA carboxylase, biotin carboxylase [Starkeya novella DSM
           506]
 gi|296927825|gb|ADH88634.1| acetyl-CoA carboxylase, biotin carboxylase [Starkeya novella DSM
           506]
          Length = 450

 Score = 82.1 bits (202), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 76/220 (34%), Gaps = 18/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---- 109
            +H  +G   E+     IL    + +         +  DK+ +K+     G+P  P    
Sbjct: 77  AVHPGYGFLAENARFAEILIDHGVQFIGPKPEHIRIMGDKIEAKKTAKRLGIPCVPGSDG 136

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGDQ 165
            +  +         I  P +IK   GG   G+ V + +Q +   L     ++ +    D 
Sbjct: 137 GVSSDEEAAKVAREIGFPVLIKAAAGGGGRGMKVARSEQELSSALSTARSEARAAFGDDA 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+Y+     +   V+GD   +   +            K             I  +  
Sbjct: 197 VYIEKYLGTPRHIEIQVLGDGKGNAIHLGERDCSLQRRHQK----VWEEAPSPIITPEQR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K +      A + +   G    +FL+   + + +++E+N 
Sbjct: 253 KRIGGTVAQAMRDLKYLGAGTIEFLY--ENGEFYFIEMNT 290


>gi|238837063|gb|ACR61637.1| heteromeric acetyl-CoA biotin carboxylase [Jatropha curcas]
          Length = 536

 Score = 82.1 bits (202), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 36/215 (16%), Positives = 78/215 (36%), Gaps = 14/215 (6%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVN 114
           +G   E+ +   +     I +      +  +  DK  +++ + + GVP  P     +   
Sbjct: 153 YGFLAENAVFVEMCREHGINFIGPNPDSIRVMGDKSTARETMKNAGVPTVPGSDGLLQNT 212

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS----IPLDLLQSSSWNHGDQLLIEQ 170
              +   H I  P +IK   GG   G+ + K+       +     ++++    D + +E+
Sbjct: 213 EEAVKLAHEIGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEK 272

Query: 171 YV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           Y+ +   +   V+ D   +V               K             +  ++ K +  
Sbjct: 273 YIQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLL----EEAPSPALTPELRKAMGD 328

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            A  A  +IG  G+   +FL D      +++E+N 
Sbjct: 329 AAVAAAASIGYIGVGTVEFLLDER-GSFYFMEMNT 362


>gi|315126574|ref|YP_004068577.1| urea carboxylase (alpha subunit) [Pseudoalteromonas sp. SM9913]
 gi|315015088|gb|ADT68426.1| urea carboxylase (alpha subunit) [Pseudoalteromonas sp. SM9913]
          Length = 663

 Score = 82.1 bits (202), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 81/221 (36%), Gaps = 20/221 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       E   I +      +      K R+K+++++  VP+ P    
Sbjct: 81  CIHPGYGFLSENSEFAKACEANNIAFIGPPATSIEAMGSKTRAKEIMAAANVPLVPGYYG 140

Query: 114 NRFT----MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
           ++            I  P +IK   GG   G+ V++K +     L     ++ +    D 
Sbjct: 141 DKQDPVFLQSEAEKIGYPVLIKAAFGGGGKGMRVVEKPKDFIAALEGAQREAIAGFGNDL 200

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           +L+E+YV+    +   V  D   +   +           L+          PA  +   +
Sbjct: 201 VLLERYVNQPRHVEVQVFADNHGNCVYL-----GDRDCSLQRRHQKVIEEAPAPGLSDAL 255

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            KE+   A     AI  RG    +FL      + F++E+N 
Sbjct: 256 RKEMGEAAVRCALAINYRGAGTVEFLL--CGNEFFFMEMNT 294


>gi|311696040|gb|ADP98913.1| urea amidolyase related protein [marine bacterium HP15]
          Length = 1208

 Score = 82.1 bits (202), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 39/254 (15%), Positives = 87/254 (34%), Gaps = 32/254 (12%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       +   + +             K  ++ +  S GVP+ P   +
Sbjct: 82  AIHPGYGFLSENADFARRCDAEGVVFLGPTPEQMEQFGLKHTARSLAESAGVPLLPGTGL 141

Query: 114 N---RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD----QL 166
                  + +   I  P ++K   GG  +G+        +          +  +     +
Sbjct: 142 LTNLEEAIKAADTIGYPVMLKSTAGGGGIGMSRCYGPDDLGKSFESVQRLSQNNFSNSGV 201

Query: 167 LIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIY 224
            +E++V+    +   + GD    V  +            +  +       PA  +  D+ 
Sbjct: 202 FLEKFVEHARHVEVQLFGDGQGQVLALGE-----RDCSAQRRNQKVIEEAPAPGLSDDVR 256

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
             +   A    ++IG R     +F++DP + + ++LE+N             +    G +
Sbjct: 257 SRMHATARQLGKSIGYRSAGTVEFIYDPDTTEFYFLEVNT-----------RLQVEHGVT 305

Query: 285 ---FR-ELLLWMVE 294
              +  +L+ WMVE
Sbjct: 306 EQVYGVDLVRWMVE 319


>gi|228476010|ref|ZP_04060718.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Staphylococcus
           hominis SK119]
 gi|314936351|ref|ZP_07843698.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Staphylococcus
           hominis subsp. hominis C80]
 gi|228269833|gb|EEK11313.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Staphylococcus
           hominis SK119]
 gi|313654970|gb|EFS18715.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Staphylococcus
           hominis subsp. hominis C80]
          Length = 451

 Score = 82.1 bits (202), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 79/221 (35%), Gaps = 18/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+G    + E  ++ +      +      K  +K  + +  VPV P    
Sbjct: 76  AIHPGYGFLAENGDFAELCEACQLKFIGPSYQSIQKMGIKDVAKAEMIAANVPVVPGSDG 135

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGD 164
            I            I  P +IK   GG   GI V + +  +            +++ +G 
Sbjct: 136 LIDSIEDAKKVAKQIGYPVIIKATAGGGGKGIRVARNENDLENGYRMTQQEAQTAFGNGG 195

Query: 165 QLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
             L E++++    +   V+GD   +V  +            +             +  + 
Sbjct: 196 LYL-EKFIENFRHIEIQVIGDQFGNVIHLGERDCTI----QRRMQKLVEESPSPILTDEK 250

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            KE+ + A  A +A+        +F++D    K +++E+N 
Sbjct: 251 RKEMGKAAIRAAKAVNYENAGTIEFIYDLNENKFYFMEMNT 291


>gi|16331500|ref|NP_442228.1| acetyl-CoA carboxylase biotin carboxylase subunit [Synechocystis
           sp. PCC 6803]
 gi|1001156|dbj|BAA10298.1| biotin carboxylase [Synechocystis sp. PCC 6803]
          Length = 448

 Score = 82.1 bits (202), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 79/220 (35%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     I    +I +      A     DK  +K+ +   GVP  P    
Sbjct: 78  AIHPGYGFLAENARFAEICADHQITFIGPSPEAITAMGDKSTAKKTMQKSGVPCVPGSPG 137

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS----IPLDLLQSSSWNHGDQ 165
            I      +     I  P +IK   GG   G+ ++++++           ++ +      
Sbjct: 138 LIESEATALKIAAEIGYPVIIKATAGGGGRGMRLVQEEKDFLKLFHAAQGEAGAAFGNPG 197

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E++++    +   ++ D+  +V  +            K             +   + 
Sbjct: 198 VYLEKFIEKPRHIEFQILADSHGNVVHLGERDCSIQRRHQKLL----EEAPSPFLTPHLR 253

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K++   A  A ++I   G    +FL D  +   +++E+N 
Sbjct: 254 KKMGEAAVKAAKSINYVGAGTVEFLVDG-NGNFYFMEMNT 292


>gi|88704412|ref|ZP_01102126.1| acyl CoA carboxylase alpha subunit [Congregibacter litoralis KT71]
 gi|88701463|gb|EAQ98568.1| acyl CoA carboxylase alpha subunit [Congregibacter litoralis KT71]
          Length = 665

 Score = 82.1 bits (202), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 41/221 (18%), Positives = 78/221 (35%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       E   I +   G  A      K R+K ++   GVP+ P    
Sbjct: 77  AIHPGYGFLSENASFARACEAAGIVFIGPGASAIDSMGSKSRAKSIMEQAGVPLIPGYHG 136

Query: 114 NRFTM----DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
           +  +     +    +  P ++K   GG   G+  +   +     L  +   +      D+
Sbjct: 137 DDQSDAVLREHADAMGYPVLLKATAGGGGKGMRAVHGPEEFSEALAAARRESSASFGDDR 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           +LIE+ +     +   V  D   +   +A           K          PA  +  ++
Sbjct: 197 MLIEKLIQRPRHVEVQVFCDGHGNGVYLAERDCSIQRRHQK-----VIEEAPAPGLSDEL 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +   A  A +AI   G    +FL D    + F++E+N 
Sbjct: 252 RRAMGEAAVDAARAIDYLGAGTVEFLLDASE-QFFFMEMNT 291


>gi|307264947|ref|ZP_07546508.1| carbamoyl-phosphate synthase, large subunit [Thermoanaerobacter
           wiegelii Rt8.B1]
 gi|306919932|gb|EFN50145.1| carbamoyl-phosphate synthase, large subunit [Thermoanaerobacter
           wiegelii Rt8.B1]
          Length = 1072

 Score = 82.1 bits (202), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 55/287 (19%), Positives = 106/287 (36%), Gaps = 35/287 (12%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI---------DVD------------RSVGLV 45
           G ++E + S   G     +L++ G +V  +         D D              V  +
Sbjct: 21  GQAAEFDYS---GTQACKSLKEEGVQVVLVNNNPATIMTDTDIADIVYIENPTVSVVEKI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +A  KPD     L G  G +  V+     IL+   +    +   +   + D+   K+ + 
Sbjct: 78  IAKEKPDGILATLGGQTGLNLAVRLKEEGILDKYNVKLLGTSFESIKTAEDRELFKRKMQ 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G PV  SI V      +        P +I+P       G  +   D+ +   +     
Sbjct: 138 EIGEPVAESITVTNVEDALKFAKNYGYPLIIRPAYTLGGTGGGIAHNDEELISIVDLGLK 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   ++L+E+ + G  E+   VM DA+ +   I     + +     ++  +S  V P +
Sbjct: 198 KSMVGEVLVEKSLYGWKEIEFEVMRDAADNCITIC--SMENFDPVGVHT-GDSIVVAPVQ 254

Query: 219 -IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +    Y+ ++       +A+   G     F  DP S K + +E+N 
Sbjct: 255 TLSDYEYQMLRSAGIKIIKALKIEGGCNIQFALDPQSHKYYVIEVNP 301



 Score = 76.3 bits (187), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 34/228 (14%), Positives = 78/228 (34%), Gaps = 16/228 (7%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--SILVNRFTMDSQHLISPPYVIKPL 133
            +    +   +  +S D+ +  +++    +        L      D    +  P +++P 
Sbjct: 650 GVKILGTSHESIDISEDREKFSKLLKELNINQPKGEYALTVGDAKDIALKLGFPLLVRPS 709

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
                  +  +   Q I   +  ++  + G  +LI++Y+DG E+    + D    +    
Sbjct: 710 YVIGGQSMEKVNTLQEIIDYVSNATQVSPGKPVLIDKYIDGREVEVDAVSDGECVLIPGI 769

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
           +   +           +S  + PA+ +       +        +A+  +G+    F    
Sbjct: 770 MEHIERAGVHS----GDSFSIYPARNLSEREINTIIEYTEKISKALNVKGLINIQFAVKE 825

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
               V+ LE+N +   T     P M+   G     ++   VE A   R
Sbjct: 826 --GTVYVLEVNPRASRT----VPIMSKATGIP---MVKLAVEVALGKR 864


>gi|229552254|ref|ZP_04440979.1| carbamoyl-phosphate synthase (glutamine-hydrolyzing) [Lactobacillus
           rhamnosus LMS2-1]
 gi|258539664|ref|YP_003174163.1| carbamoyl-phosphate synthase large subunit [Lactobacillus rhamnosus
           Lc 705]
 gi|229314390|gb|EEN80363.1| carbamoyl-phosphate synthase (glutamine-hydrolyzing) [Lactobacillus
           rhamnosus LMS2-1]
 gi|257151340|emb|CAR90312.1| Carbamoyl-phosphate synthase, large subunit [Lactobacillus
           rhamnosus Lc 705]
          Length = 1060

 Score = 82.1 bits (202), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 53/286 (18%), Positives = 102/286 (35%), Gaps = 33/286 (11%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI---------DVD------------RSVGLV 45
           G ++E + S   G     AL + G++V  +         D +              V  +
Sbjct: 21  GQAAEFDYS---GTQACLALREEGYEVVLVNSNPATIMTDTEIADRVYIEPLTVEFVSQI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           L    PD     + G  G +  ++     IL+ L I    + + A   + D+   K ++ 
Sbjct: 78  LRKELPDAILPTIGGQIGLNLAMKLSNTGILDELGIELLGTKLSAIDQAEDRELFKNLMQ 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
               PV  S + N  +   +    I  P +I+P       G  +   ++ +        +
Sbjct: 138 KLHEPVPESAIANNVQEAQEFADKIGFPVIIRPAFTMGGTGGGIADNEKELAEIAENGLN 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   Q+LIE+ + G  E+   VM DAS     I V   + +     ++  +        
Sbjct: 198 LSPVTQVLIERSIAGYKEIEFEVMRDASDSA--IVVCNMENFDPVGVHTGDSMVFAPTQT 255

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +     + ++  A    +A+   G     F  D  S K + +E+N 
Sbjct: 256 LTDKEVQMLRDSALKIIRALKIEGGCNVQFALDRNSFKYYVIEVNP 301



 Score = 79.4 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 30/195 (15%), Positives = 67/195 (34%), Gaps = 15/195 (7%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQHLISPPYVIKPL 133
            I    + +     + D+    QV+    +P             +     I  P +++P 
Sbjct: 650 GIKILGTSVADLNRAEDRDLFDQVIKELKLPQPEGGTATDKDGALAVADKIGYPVLVRPS 709

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS---LDVT 190
                  + ++     +   + ++ S +H   +LI+ Y+ G E     + D     L   
Sbjct: 710 YVLGGRAMEIVHDADELASYIDRAVSVSHDHPVLIDHYLVGKECEVDCISDGETVVLPGI 769

Query: 191 EIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
              + ++  +S        +S  V P +    DI  ++        +A+ C G+    F+
Sbjct: 770 MEHIERAGIHS-------GDSMAVYPPQTFSQDIIDQITDATIKLSRALNCIGLMNVQFI 822

Query: 250 FDPLSRKVFWLEINV 264
                 K + +E+N 
Sbjct: 823 IHQ--GKAYVIEVNP 835


>gi|208778956|ref|ZP_03246302.1| acetyl-CoA carboxylase, biotin carboxylase [Francisella novicida
           FTG]
 gi|254373991|ref|ZP_04989473.1| acetyl-CoA carboxylase [Francisella novicida GA99-3548]
 gi|151571711|gb|EDN37365.1| acetyl-CoA carboxylase [Francisella novicida GA99-3548]
 gi|208744756|gb|EDZ91054.1| acetyl-CoA carboxylase, biotin carboxylase [Francisella novicida
           FTG]
          Length = 451

 Score = 82.1 bits (202), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 34/222 (15%), Positives = 80/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +      +  +  DK+ + + +   GVP  P    
Sbjct: 77  AIHPGYGFLSENAKFAKAVEESGFIFIGPRAESIEIMGDKVEAIRYMKKAGVPCVPGSGG 136

Query: 112 ---LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GD 164
                 +  ++    I  P +IK   GG   G+ +++K + +   +  + S        D
Sbjct: 137 PLGSDEKKNLEIAEKIGYPVIIKAAGGGGGRGMSIVRKKEDLISAISLTKSEARIAFNND 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLD 222
            + +E++++    +   V GD   +   +            +          PA  +  +
Sbjct: 197 MVYMEKFLENPRHIEIQVFGDGEGNAVYL-----FERDCSTQRRHQKVIEEAPAIGLSDE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             K +      A + +  RG    +FL+   + + +++E+N 
Sbjct: 252 ERKRIGEQCVSACKILKYRGAGTFEFLY--ENGEFYFIEMNT 291


>gi|328676632|gb|AEB27502.1| Biotin carboxylase of acetyl-CoA carboxylase [Francisella cf.
           novicida Fx1]
          Length = 451

 Score = 82.1 bits (202), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 34/222 (15%), Positives = 80/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +      +  +  DK+ + + +   GVP  P    
Sbjct: 77  AIHPGYGFLSENAKFAKAVEESGFIFIGPRAESIEIMGDKVEAIRYMKKAGVPCVPGSGG 136

Query: 112 ---LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GD 164
                 +  ++    I  P +IK   GG   G+ +++K + +   +  + S        D
Sbjct: 137 PLGSDEKKNLEIAEKIGYPVIIKAAGGGGGRGMSIVRKKEDLISAISLTKSEARIAFNND 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLD 222
            + +E++++    +   V GD   +   +            +          PA  +  +
Sbjct: 197 MVYMEKFLENPRHIEIQVFGDGEGNAVYL-----FERDCSTQRRHQKVIEEAPAIGLSDE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             K +      A + +  RG    +FL+   + + +++E+N 
Sbjct: 252 ERKRIGEQCVSACKILKYRGAGTFEFLY--ENGEFYFIEMNT 291


>gi|56707615|ref|YP_169511.1| Acetyl-CoA carboxylase, biotin carboxylase subunit [Francisella
           tularensis subsp. tularensis SCHU S4]
 gi|110670086|ref|YP_666643.1| Acetyl-CoA carboxylase, biotin carboxylase subunit [Francisella
           tularensis subsp. tularensis FSC198]
 gi|224456685|ref|ZP_03665158.1| Acetyl-CoA carboxylase, biotin carboxylase subunit [Francisella
           tularensis subsp. tularensis MA00-2987]
 gi|254370132|ref|ZP_04986138.1| acetyl-CoA carboxylase [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254874435|ref|ZP_05247145.1| acetyl-CoA carboxylase [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|56604107|emb|CAG45106.1| Acetyl-CoA carboxylase, biotin carboxylase subunit [Francisella
           tularensis subsp. tularensis SCHU S4]
 gi|110320419|emb|CAL08489.1| Acetyl-CoA carboxylase, biotin carboxylase subunit [Francisella
           tularensis subsp. tularensis FSC198]
 gi|151568376|gb|EDN34030.1| acetyl-CoA carboxylase [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254840434|gb|EET18870.1| acetyl-CoA carboxylase [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|282158772|gb|ADA78163.1| Acetyl-CoA carboxylase, biotin carboxylase subunit [Francisella
           tularensis subsp. tularensis NE061598]
          Length = 451

 Score = 82.1 bits (202), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 34/222 (15%), Positives = 80/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +      +  +  DK+ + + +   GVP  P    
Sbjct: 77  AIHPGYGFLSENAKFAKAVEESGFIFIGPRAESIEIMGDKVEAIRYMKKAGVPCVPGSGG 136

Query: 112 ---LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GD 164
                 +  ++    I  P +IK   GG   G+ +++K + +   +  + S        D
Sbjct: 137 PLGSDEKKNLEIAEKIGYPVIIKAAGGGGGRGMSIVRKKEDLISAISLTKSEARIAFNND 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLD 222
            + +E++++    +   V GD   +   +            +          PA  +  +
Sbjct: 197 MVYMEKFLENPRHIEIQVFGDGEGNAVYL-----FERDCSTQRRHQKVIEEAPAIGLSDE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             K +      A + +  RG    +FL+   + + +++E+N 
Sbjct: 252 ERKRIGEQCVSACKILKYRGAGTFEFLY--ENGEFYFIEMNT 291


>gi|56551631|ref|YP_162470.1| acetyl-CoA carboxylase biotin carboxylase [Zymomonas mobilis subsp.
           mobilis ZM4]
 gi|56543205|gb|AAV89359.1| acetyl-CoA carboxylase, biotin carboxylase [Zymomonas mobilis
           subsp. mobilis ZM4]
          Length = 428

 Score = 82.1 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 78/220 (35%), Gaps = 18/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     I+E  E+ +         +  DK+ +K+     G+P+ P    
Sbjct: 54  AVHPGYGFLSENARFAEIVESHELIWIGPKPEHIRIMGDKVEAKRTAGKLGLPLVPGSDG 113

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSWNHGDQ 165
            +   R        I  P +IK   GG   G+ V++ +  +         ++ +    D 
Sbjct: 114 PLHEIREAKAVAAEIGYPVLIKAASGGGGRGMKVVQSEDELESLMAQAKSEAKAAFGDDT 173

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+Y+     +   + GD       +            K             I  +  
Sbjct: 174 IYMEKYLAAPRHIEFQIFGDGEGQAIHLGERDCSLQRRHQKVL----EEAPSPVISAEQR 229

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +E+  +   A   +  RG    +FL+   + + +++E+N 
Sbjct: 230 EEMGGIVAKAMSDMQYRGAGTIEFLY--ENGQFYFIEMNT 267


>gi|77462642|ref|YP_352146.1| pyruvate carboxylase [Rhodobacter sphaeroides 2.4.1]
 gi|77387060|gb|ABA78245.1| Pyruvate carboxylase [Rhodobacter sphaeroides 2.4.1]
          Length = 1154

 Score = 82.1 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 74/221 (33%), Gaps = 18/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       +   I +            DK  +++V  + GVPV P+  V
Sbjct: 80  AIHPGYGLLSENPDFVEACDAAGIAFIGPKAETMRALGDKASARRVAMAAGVPVIPATEV 139

Query: 114 NRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGDQ 165
               M+        I  P ++K   GG   G+  I  +  +   +     ++ +     +
Sbjct: 140 LGDDMEEIKRQAAEIGYPLMLKASWGGGGRGMRPITSEAELADKVREGRREAEAAFGNGE 199

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
             +E+ +     +   ++GD    +  +            K          PA  +  + 
Sbjct: 200 GYLEKMIQRARHVEVQILGDKYGAIYHLYERDCTVQRRNQK-----VVERAPAPYLTEEQ 254

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             E+  L       +        +FL D  S K +++E+N 
Sbjct: 255 RTEICELGRRICAHVNYECAGTVEFLMDMDSEKFYFIEVNP 295


>gi|322807919|emb|CBZ05494.1| biotin carboxylase of acetyl-CoA carboxylase [Clostridium botulinum
           H04402 065]
          Length = 448

 Score = 82.1 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 81/220 (36%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  FG   E+     + +   I +            +K  ++ ++   GVPV P    
Sbjct: 77  AIHPGFGFLSENSKFANMCKDCNIVFIGPDSETIDKVGNKSNARDIMIRAGVPVIPGSNG 136

Query: 111 ILVNRFT-MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
           ++ N    ++    I  P V+K   GG   GI ++   +++      + S        D 
Sbjct: 137 VIHNEEEALNIAEEIGYPIVVKASAGGGGRGIRIVHSKENMIKAFNTAKSEAKGAFGDDS 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+++     +   ++GD   ++  +            K            ++  ++ 
Sbjct: 197 MYVEKFIKNPRHIEFQILGDNYGNIIHLGERDCSLQRRNQKVL----EEAPSPRMNEELR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K +  +A  A +A+  +     +FL D      +++E+N 
Sbjct: 253 KRMGDVAIKAAKAVEYKNAGTIEFLLDE-DGNFYFMEMNT 291


>gi|241761246|ref|ZP_04759334.1| acetyl-CoA carboxylase, biotin carboxylase [Zymomonas mobilis
           subsp. mobilis ATCC 10988]
 gi|260752778|ref|YP_003225671.1| acetyl-CoA carboxylase, biotin carboxylase [Zymomonas mobilis
           subsp. mobilis NCIMB 11163]
 gi|241374153|gb|EER63650.1| acetyl-CoA carboxylase, biotin carboxylase [Zymomonas mobilis
           subsp. mobilis ATCC 10988]
 gi|258552141|gb|ACV75087.1| acetyl-CoA carboxylase, biotin carboxylase [Zymomonas mobilis
           subsp. mobilis NCIMB 11163]
          Length = 452

 Score = 82.1 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 78/220 (35%), Gaps = 18/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     I+E  E+ +         +  DK+ +K+     G+P+ P    
Sbjct: 78  AVHPGYGFLSENARFAEIVESHELIWIGPKPEHIRIMGDKVEAKRTAGKLGLPLVPGSDG 137

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSWNHGDQ 165
            +   R        I  P +IK   GG   G+ V++ +  +         ++ +    D 
Sbjct: 138 PLHEIREAKAVAAEIGYPVLIKAASGGGGRGMKVVQSEDELESLMAQAKSEAKAAFGDDT 197

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+Y+     +   + GD       +            K             I  +  
Sbjct: 198 IYMEKYLAAPRHIEFQIFGDGEGQAIHLGERDCSLQRRHQKVL----EEAPSPVISAEQR 253

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +E+  +   A   +  RG    +FL+   + + +++E+N 
Sbjct: 254 EEMGGIVAKAMSDMQYRGAGTIEFLY--ENGQFYFIEMNT 291


>gi|307708251|ref|ZP_07644718.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus mitis
           NCTC 12261]
 gi|307615697|gb|EFN94903.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus mitis
           NCTC 12261]
          Length = 455

 Score = 82.1 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 41/220 (18%), Positives = 79/220 (35%), Gaps = 16/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  FG   E+     + E + I +         +  DK+ ++  +   GVPV P    
Sbjct: 77  AIHPGFGFLSENSKFATMCEEVGIKFIGPSGHVMDMMGDKINARAQMIKAGVPVIPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
            +  +   +     I  P ++K   GG   GI  ++K + +      +SS          
Sbjct: 137 EVHNSEEALTVAEKIGYPVMLKASAGGGGKGIRKVEKPEDLVSAFETASSEAKANYGNGA 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+ +     +   ++GD   +V  +            K             I   + 
Sbjct: 197 MYIERVIYPARHIEVQILGDEHGNVIHLGERDCSLQRNNQKVL----EESPSIAIGKTLR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            E+   A  A +++G       +FL D  S K +++E+N 
Sbjct: 253 HEIGAAAVRAAESVGYENAGTIEFLLDEASGKFYFMEMNT 292


>gi|195505549|ref|XP_002099553.1| GE23296 [Drosophila yakuba]
 gi|194185654|gb|EDW99265.1| GE23296 [Drosophila yakuba]
          Length = 698

 Score = 82.1 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 81/221 (36%), Gaps = 18/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E      + +  +I +      A      K  SK ++++ GVP+      
Sbjct: 102 AIHPGYGFLSESVEFAELCQREDIIFMGPPSSAIRDMGIKSTSKAIMAAAGVPIINGYHG 161

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
              + +       +I  P +IK ++GG   G+ + +K       L  + + +        
Sbjct: 162 EDQSDECLQREADIIGFPLMIKAVRGGGGKGMRIAEKRDDFLTALNSARTESEKSFGDSS 221

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           +L+E+YV     +   V  D   +   +           ++          PA  +  D+
Sbjct: 222 VLLERYVRSPRHVEVQVFADQYGEAVYLWE-----RDCSVQRRHQKIIEEAPAPGLSEDL 276

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +E+   A  A +A+G  G    +F+ D       ++E+N 
Sbjct: 277 RRELGEAAVRAAKAVGYVGAGTVEFILDKEDLSFHFMEMNT 317


>gi|169781310|ref|XP_001825118.1| hypothetical protein AOR_1_1110074 [Aspergillus oryzae RIB40]
 gi|83773860|dbj|BAE63985.1| unnamed protein product [Aspergillus oryzae]
          Length = 573

 Score = 82.1 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 50/278 (17%), Positives = 89/278 (32%), Gaps = 67/278 (24%)

Query: 37  DVDRSVGLVLAHLKPDLAFNVLHGNFGED-GLVQA--ILELLEIPYTHSGILASALSMDK 93
           D  +           D   N L G   +D   +QA    E L +P         + +  K
Sbjct: 44  DTAKEEIDSCVKEGFDFYLNFLWGTLDDDVAGIQASQYFESLGVPSAGIRSWERSRT--K 101

Query: 94  MRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGI---IVIKKDQSI 150
               +     G P  P                 P  +KP  G +S  I    V   +  +
Sbjct: 102 NDFYKEARKRGAPRVPG------------TDRFPLFVKPANGCASQMIDERSVCHDEGEL 149

Query: 151 PLDL------------------------LQSSSWN---HGDQLLIEQYVDGIELTCGV-- 181
              L                          +  ++     + +++++Y+ G E    V  
Sbjct: 150 REALRRINVQLYESRLNRGRSLGVPDFKAYADGFDPVTRSEDIVVQEYIPGKEYVVSVIE 209

Query: 182 MGDASLDVTEIAVPKSD------FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
           +GD+++ +    V   D      F +++LK+ S     ++  K    +Y  +Q  A  A 
Sbjct: 210 LGDSAVALNPCIVKTKDLSANEKFLTFDLKFDSETRFELIEKKDNPALYDRLQTTALEAF 269

Query: 236 QA-------IGCRGISRSDFLFDPLSRKVFWLEINVQP 266
           +        +GC      D    P   +VF +E+N QP
Sbjct: 270 KTGMFHGSHMGCD----VDLRVRP-DGEVFAIEVNPQP 302


>gi|218883941|ref|YP_002428323.1| Carbamoyl-phosphate synthase L chain, ATP-binding [Desulfurococcus
           kamchatkensis 1221n]
 gi|218765557|gb|ACL10956.1| Carbamoyl-phosphate synthase L chain, ATP-binding [Desulfurococcus
           kamchatkensis 1221n]
          Length = 502

 Score = 82.1 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 47/254 (18%), Positives = 96/254 (37%), Gaps = 31/254 (12%)

Query: 57  VLHGNFG----EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            +H  +G    E G  Q +     + +          + DK+  K +     +P  P  L
Sbjct: 71  AIHPGYGLLESEPGFSQEVAR-RGLIFVGPPPGQIEFARDKLAVKTLAEKLEIPTLPWSL 129

Query: 113 VNRFTMDSQHLI---SPPYVIKPLKGGSSLGIIVI---KKDQSIPLDLLQSSSWNHGDQL 166
           V +   D +  +     P ++KP+KG    G+ ++   K    +   + ++       ++
Sbjct: 130 V-KNEEDLEEFVRTYGYPLILKPVKGNWGRGLRILWSEKDRDQLKTLIKEAEKIYRDSRI 188

Query: 167 LIEQYVDGI-ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI-- 223
            +E Y+  +  +   ++GD    +          Y  E          ++ A   L +  
Sbjct: 189 YVEPYITNVKHIEIQLIGDGEKVI--------HLYDRECSIQDNYMKILVEAPSTLQVNG 240

Query: 224 -YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAG 282
             +++   A    +A+  R ++  +FL+D  SR VF  E+N+  G++P     E      
Sbjct: 241 LREKILNYALSIGEAMRLRNLATIEFLYDARSRSVFLNEVNM--GLSPEHAVTEAVTRI- 297

Query: 283 YSFRELLLWMVEDA 296
               +L+   VE A
Sbjct: 298 ----DLVEKQVEAA 307


>gi|322377050|ref|ZP_08051542.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Streptococcus
           sp. M334]
 gi|321281763|gb|EFX58771.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Streptococcus
           sp. M334]
          Length = 455

 Score = 82.1 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 41/220 (18%), Positives = 77/220 (35%), Gaps = 16/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  FG   E+     + E + I +         +  DK+ ++  +   GVPV P    
Sbjct: 77  AIHPGFGFLSENSKFATMCEEVGIKFIGPSGHVMDMMGDKINARAQMIKAGVPVIPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
            +  +   +     I  P ++K   GG   GI  ++K   +      +SS          
Sbjct: 137 EVHNSEEALIVAEKIGYPVMLKASAGGGGKGIRKVEKPDDLVSAFETASSEAKANYGNGA 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+ +     +   ++GD    V  +            K             I   + 
Sbjct: 197 MYIERVIYPARHIEVQILGDEHGHVIHLGERDCSLQRNNQKVL----EESPSIAIGKTLR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            E+   A  A +++G       +FL D  S K +++E+N 
Sbjct: 253 HEIGAAAVRAAESVGYENAGTIEFLLDEASGKFYFMEMNT 292


>gi|194764885|ref|XP_001964558.1| GF23246 [Drosophila ananassae]
 gi|190614830|gb|EDV30354.1| GF23246 [Drosophila ananassae]
          Length = 698

 Score = 82.1 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 81/221 (36%), Gaps = 18/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E      + +   + +      A      K  SK ++++ GVP+      
Sbjct: 102 AIHPGYGFLSESVEFAELCQREGVIFMGPPSSAIRDMGIKSTSKAIMAAAGVPIINGYHG 161

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
           +  + +        I  P +IK ++GG   G+ + +K +     L  + + +        
Sbjct: 162 DDQSDECLQREAKAIGFPLMIKAVRGGGGKGMRIAEKPEDFLTALNSARTESQKSFGDSS 221

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           +L+E+YV     +   V  D   D   +           ++          PA  +  ++
Sbjct: 222 VLLERYVRSPRHVEVQVFADQYGDAVYLWE-----RDCSVQRRHQKIIEEAPAPGLSEEL 276

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +E+   A  A +A+G  G    +F+ D       ++E+N 
Sbjct: 277 RRELGEAAVRAAKAVGYVGAGTVEFILDKEDLSFHFMEMNT 317


>gi|296388622|ref|ZP_06878097.1| 'geranyl-CoA carboxylase, alpha-subunit (biotin-containing)'
           [Pseudomonas aeruginosa PAb1]
          Length = 661

 Score = 82.1 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 69/220 (31%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       E   I +      A  L   K  SK  + + GVP  P    
Sbjct: 79  AIHPGYGFLSENAEFARACEAAGIVFIGPDAEAIHLMGSKRLSKIAMLAAGVPCIPGYEG 138

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS-----SWNHGD 164
                         I  P +IK   GG   G+ ++++   +   L  +      ++   +
Sbjct: 139 AEQDDATLRREAERIGYPLMIKASAGGGGRGMRLVEEPGQLLEQLRTARSEALGAFGSAE 198

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
            +L         +   V GD   ++  +            K             +  D+ 
Sbjct: 199 LILERAVPRPRHVEIQVFGDRHGNLLYLGERDCSVQRRHQK----VIEEAPCPVLDADLR 254

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +   A  A  ++   G    +FL      + ++LE+N 
Sbjct: 255 RAMGEAAVKAAASVNYVGAGTVEFLL-GEDGRFYFLEMNT 293


>gi|222106691|ref|YP_002547482.1| acetyl-CoA carboxylase biotin carboxylase [Agrobacterium vitis S4]
 gi|221737870|gb|ACM38766.1| acetyl-CoA carboxylase biotin carboxylase [Agrobacterium vitis S4]
          Length = 666

 Score = 82.1 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 46/240 (19%), Positives = 84/240 (35%), Gaps = 16/240 (6%)

Query: 34  SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDK 93
           S I +D+ +   +     D      +G   E+      L+   + +    + A     DK
Sbjct: 60  SYIVIDK-ILEAIRQTGADAVHPG-YGFLSENAAFAEALDKAGVAFIGPPVGAIKAMGDK 117

Query: 94  MRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS 149
           + SK++ +  GV   P     I      +     I  P +IK   GG   G+ +   D  
Sbjct: 118 ITSKKLAAEAGVSTVPGHMGLIADADEAVKIAAQIGYPVMIKASAGGGGKGMRIAWNDAE 177

Query: 150 IPLDLLQSSSWNH----GDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYEL 204
                  S +        D++ IE++VD    +   V+GD   +V  +   +        
Sbjct: 178 AREGFQSSKNEAMNSFGDDRIFIEKFVDQPRHIEIQVLGDKHGNVLYLGERECSIQRRNQ 237

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K             +  D  K +   A    +A+G       +F+ D  +R  ++LE+N 
Sbjct: 238 K----VIEEAPSPFLDADTRKAMGEQAVALAKAVGYYSAGTVEFIVDG-NRNFYFLEMNT 292


>gi|83648393|ref|YP_436828.1| acetyl/propionyl-CoA carboxylase subunit alpha [Hahella chejuensis
           KCTC 2396]
 gi|83636436|gb|ABC32403.1| Acetyl/propionyl-CoA carboxylase, alpha subunit [Hahella chejuensis
           KCTC 2396]
          Length = 651

 Score = 82.1 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 72/220 (32%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+     +     + +      A AL   K  SK  +    VP  P    
Sbjct: 77  AVHPGYGFLSENARFAELCADAGVTFIGPPADAIALMGSKRLSKLAMQDAEVPCIPGYEG 136

Query: 112 --LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS-----SWNHGD 164
               +   +     I  P +IK   GG   G+ + + +  +   +  +      ++   +
Sbjct: 137 EDQSDATLIAEAGRIGFPVMIKASAGGGGRGMRLAQGEAELAEQIKTARSEALNAFGSDE 196

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
            +L +  +    +   V  D+      +            K             +  ++ 
Sbjct: 197 LILEKALLKPRHIEIQVFADSHGSALYLGERDCSVQRRHQK----VVEEAPSPFVDAELR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +   A  A Q+ G  G    +FL D   ++ ++LE+N 
Sbjct: 253 ERMGAAAVKAAQSCGYVGAGTVEFLVD-QDKQFYFLEMNT 291


>gi|254774497|ref|ZP_05216013.1| acetyl-/propionyl-coenzyme A carboxylase alpha chain [Mycobacterium
           avium subsp. avium ATCC 25291]
          Length = 671

 Score = 82.1 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 77/221 (34%), Gaps = 17/221 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+    A  E   + +      A  +  DK+ +K  V+   VPV P +  
Sbjct: 77  AIHPGYGFLSENADFAAACERAGVVFLGPPARAIQVMGDKITAKNAVAEFDVPVVPGVAK 136

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
                D    +   I  P +IKP  GG   G+ ++++   +   L+ +          D 
Sbjct: 137 PGLGDDELVAAAEEIGYPVLIKPSAGGGGKGMRLVEEPGRLREALVGARREAATSFGDDT 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           L +E++V     +   ++ D   +V  +   +        K             +     
Sbjct: 197 LFLERFVLRPRHIEVQILADTHGNVVHLGERECSLQRRHQK----VIEEAPSPLLDPATR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLS-RKVFWLEINV 264
             +   A    +++   G    +F+       + F++E+N 
Sbjct: 253 ARIGAAACNTARSVDYVGAGTVEFIVSADRPDEFFFMEMNT 293


>gi|119719037|ref|YP_919532.1| carbamoyl-phosphate synthase L chain, ATP-binding [Thermofilum
           pendens Hrk 5]
 gi|119524157|gb|ABL77529.1| pyruvate carboxylase subunit A [Thermofilum pendens Hrk 5]
          Length = 492

 Score = 82.1 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 37/196 (18%), Positives = 79/196 (40%), Gaps = 12/196 (6%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI---LVNRFTMDSQHLISPPYVIKP 132
            + +         L  DK+ +++  SS G+PV P     +     +     I  P ++KP
Sbjct: 101 GLIWVGPKPETMKLVGDKLGARKFFSSKGIPVVPGAFEAVDFNSALSIAEEIGFPVIVKP 160

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQS-----SSWNHGDQLLIEQYVDGIELTCGVMGDASL 187
             GG  +G+ V    + +  +L ++     S++   +  + + +     +   ++GD   
Sbjct: 161 AGGGGGIGMFVAHTPEDLEKNLEKARQLAGSAFARTEVYVEKYFPRAKHIEVQILGDKRG 220

Query: 188 DVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
            V  +   +    S + +Y  +         +  +  +++   A  A +A G       +
Sbjct: 221 RVVHLFERE---CSVQRRYQKV-VEEAPSPSLTQEEREKLLSAAVKAAEACGYENAGTFE 276

Query: 248 FLFDPLSRKVFWLEIN 263
           FLFD  SR  ++LE+N
Sbjct: 277 FLFDVESRNFYFLEVN 292


>gi|296877090|ref|ZP_06901131.1| acetyl-CoA carboxylase subunit A [Streptococcus parasanguinis ATCC
           15912]
 gi|296431951|gb|EFH17757.1| acetyl-CoA carboxylase subunit A [Streptococcus parasanguinis ATCC
           15912]
          Length = 462

 Score = 82.1 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 77/220 (35%), Gaps = 16/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  FG   E+     + E + I +         +  DK+ +++ +   GVPV P    
Sbjct: 85  AIHPGFGFLSENSKFATMCEEVGIKFIGPSAKVMDMMGDKINARKQMIKAGVPVIPGSDG 144

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
            +      ++    I  P ++K   GG   GI  ++K + +         ++ +      
Sbjct: 145 EVYTAEEALEIAERIGYPVMLKASAGGGGKGIRKVEKPEDLVAAFESASSEAQAAFGNGA 204

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+ +     +   ++ D    V  +            K             I   + 
Sbjct: 205 MYMERVIYPARHIEVQILADQHGHVIHLGERDCSLQRNNQKVL----EESPSIAIGKTLR 260

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +   A  A +++G       +FL+D    + +++E+N 
Sbjct: 261 NRIGSAAVRAAESVGYENAGTIEFLYDEGKGEFYFMEMNT 300


>gi|110680477|ref|YP_683484.1| methylcrotonyl-CoA carboxylase, alpha subunit [Roseobacter
           denitrificans OCh 114]
 gi|109456593|gb|ABG32798.1| methylcrotonyl-CoA carboxylase, alpha subunit [Roseobacter
           denitrificans OCh 114]
          Length = 645

 Score = 82.1 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 42/224 (18%), Positives = 78/224 (34%), Gaps = 23/224 (10%)

Query: 58  LHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI--- 111
           +H  +G   E+      +E   + +      A      K  +K ++   GVPV P     
Sbjct: 78  IHPGYGFLSENPEFVEAVETAGLVFIGPSAQAIRAMGLKDAAKALMIDAGVPVVPGYHGA 137

Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQL 166
              +         I  P +IK + GG   G+ ++         L  + S          +
Sbjct: 138 DQADAQLQQQADRIGYPVLIKAVAGGGGKGMRLVSAASEFSEALAAARSEAQAAFGNSDV 197

Query: 167 LIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIY 224
           LIE+++     +   V GD +       V         L+          PA  +  ++ 
Sbjct: 198 LIEKFIPQPRHIEVQVFGDGT------DVVHLFERDCSLQRRHQKVIEEAPAPGMTPEVR 251

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLS----RKVFWLEINV 264
           + + R A  A +AIG +G    +F+ D          +++E+N 
Sbjct: 252 EAMGRAAVRAAKAIGYKGAGTVEFIVDGTGDLRPDGFYFMEMNT 295


>gi|170756739|ref|YP_001783232.1| biotin carboxylase [Clostridium botulinum B1 str. Okra]
 gi|169121951|gb|ACA45787.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Clostridium
           botulinum B1 str. Okra]
          Length = 448

 Score = 82.1 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 81/220 (36%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  FG   E+     + +   I +            +K  ++ ++   GVPV P    
Sbjct: 77  AIHPGFGFLSENSKFANMCKDCNIVFIGPDSETIDKVGNKSNARDIMIRAGVPVIPGSNG 136

Query: 111 ILVNRFT-MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
           ++ N    ++    I  P V+K   GG   GI ++   +++      + S        D 
Sbjct: 137 VIHNEEEALNIAEEIGYPVVVKASAGGGGRGIRIVHSKENMIKAFNTAKSEAKGAFGDDS 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+++     +   ++GD   ++  +            K            ++  ++ 
Sbjct: 197 MYVEKFIKNPRHIEFQILGDNYGNIIHLGERDCSLQRRNQKVL----EEAPSPRMNEELR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K +  +A  A +A+  +     +FL D      +++E+N 
Sbjct: 253 KRMGDVAIKAAKAVEYKNAGTIEFLLDE-DGSFYFMEMNT 291


>gi|303229566|ref|ZP_07316354.1| pyruvate carboxylase [Veillonella atypica ACS-134-V-Col7a]
 gi|302515691|gb|EFL57645.1| pyruvate carboxylase [Veillonella atypica ACS-134-V-Col7a]
          Length = 1148

 Score = 82.1 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 95/278 (34%), Gaps = 28/278 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59
           +A+     S E  +SL   +A  + L   G K     +D   +  +      D     +H
Sbjct: 31  VAI----YSKEDTLSLHRNQADEAYLVGEGKKPVDAYLDIEDIIRIAKEHDID----AIH 82

Query: 60  GNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI--LVN 114
             +G   E+           I +    +    +  DK+ ++       +P+ P     + 
Sbjct: 83  PGYGFLSENEEFARRCGEEGIIFIGPHVEHLNMFGDKVNARTQAKLADIPMIPGSDGALR 142

Query: 115 RFTM--DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQLLI 168
            F    +       P +IK + GG   G+  + + + +         ++ +    D + +
Sbjct: 143 DFAQLEEFAETHGYPLMIKAVNGGGGRGMREVHRKEDLRDAYDRAKSEAKAAFGDDDVYV 202

Query: 169 EQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKE 226
           E+ + +   +   ++GD   +V              ++        + PA  +PL+  K 
Sbjct: 203 EKLIVEPKHIEVQILGDEHGNVV-----HLHERDCSVQRRHQKVVEMAPAFALPLETRKA 257

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           V   A    + +G       +FL        +++E+N 
Sbjct: 258 VCDAAVKIMKNVGYVNAGTVEFLVT-SDGSFYFIEVNP 294


>gi|289548708|ref|YP_003473696.1| carbamoyl-phosphate synthase L chain ATP- binding protein
           [Thermocrinis albus DSM 14484]
 gi|289182325|gb|ADC89569.1| Carbamoyl-phosphate synthase L chain ATP- binding protein
           [Thermocrinis albus DSM 14484]
          Length = 475

 Score = 82.1 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 43/242 (17%), Positives = 91/242 (37%), Gaps = 23/242 (9%)

Query: 33  VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
           V  +D+ +SVG    H          +G   E+       +   I +         L  D
Sbjct: 63  VRIVDLAKSVGADAIHPG--------YGFLAENADFARYCQKRGIVFIGPKPEHIELFGD 114

Query: 93  KMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQ 148
           K+++KQ++   G+P  P     +      +     I  P ++K   GG   G+ V++  +
Sbjct: 115 KVKAKQMMQKLGIPTIPGSPEPLRNYEDALHYAREIGFPVILKSAFGGGGRGMRVVRTPE 174

Query: 149 SIP----LDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYE 203
            +P        ++ ++     L +E+Y+ D   +   ++GD   +V              
Sbjct: 175 ELPHLFESAYREAETFFGKGDLFLEKYLDDPKHIEVQILGDKYGNVV-----HLGERDCS 229

Query: 204 LKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
           ++        + P   +P  I  ++  L+  A   +G       +FL D  + + +++E+
Sbjct: 230 IQRKHQKIIEITPCPVLPPSIRNKMLGLSVRAMMQVGYESAGTLEFLVDLKTGEFYFIEM 289

Query: 263 NV 264
           N 
Sbjct: 290 NT 291


>gi|78044884|ref|YP_359765.1| acetyl-CoA carboxylase, biotin carboxylase [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|77996999|gb|ABB15898.1| acetyl-CoA carboxylase, biotin carboxylase [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 517

 Score = 82.1 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 79/220 (35%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+           I +      A  L  DK  +++++   GVPV P    
Sbjct: 74  AIHPGYGFLAENSKFAKSCLDAGIKFIGPSAKAIELMGDKAVAREIMKKAGVPVIPGSDG 133

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
            I   R  +     I  P ++K   GG   G+ ++   + +   +  ++          +
Sbjct: 134 EIDDFREALKVADEIGYPVIVKAAGGGGGRGMRIVHTPKELEEAIQSAAREAASTFGNSK 193

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           L +E+Y+ D   +   ++ D   +   +            K       HV    +   + 
Sbjct: 194 LYLEKYLQDCRHVEFQILADQYGNAVYLGERDCSLQRRNQKVIEEGPCHV----LTERMR 249

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K++  LA  +  A+   G    +FL D      +++E+N 
Sbjct: 250 KKMGELAVRSAMAVHYAGAGTVEFLLDDRGN-FYFIEMNT 288


>gi|260588104|ref|ZP_05854017.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Blautia
           hansenii DSM 20583]
 gi|260541631|gb|EEX22200.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Blautia
           hansenii DSM 20583]
          Length = 447

 Score = 81.7 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 79/220 (35%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  FG   E+     + E   + +            +K  +++ +   GVPV P    
Sbjct: 77  AIHPGFGFLSENSRFAQMCEKCHVAFIGPSPEIIQKMGNKSEARKTMMQAGVPVIPGTKE 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
            +      +     I  P +IK   GG   G+ V +K +    + L +   +      D 
Sbjct: 137 AVYTVEEGLSEAERIGFPVMIKASSGGGGKGMRVSEKKEDFTENFLMAQQESKNSFGDDT 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+YV     +   ++GD   +V ++            K             I   I 
Sbjct: 197 MYIERYVRNPRHIEVQILGDKFGNVVQLGERDCSIQRRHQK----LIEESPCCAISEKIR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +++   A  A +A+G       +FL D    + F++E+N 
Sbjct: 253 EKLGETARKAAKAVGYESAGTIEFLLDES-GEFFFMEMNT 291


>gi|33326388|gb|AAQ08609.1| pyruvate carboxylase [Agrobacterium vitis]
          Length = 1155

 Score = 81.7 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 32/200 (16%), Positives = 75/200 (37%), Gaps = 15/200 (7%)

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVI 130
             + +            +K+ ++ +    GVPV P+       MD+       I  P ++
Sbjct: 106 AGLIFIGPTSDTMRQLGNKVAARNLAVDVGVPVVPATEPLPDDMDTVAKMAGEIGYPLML 165

Query: 131 KPLKGGSSLGIIVIKKDQSIP----LDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDA 185
           K   GG   G+ VI+ +  +         ++ +    D++ +E+ V+    +   ++GD 
Sbjct: 166 KASWGGGGRGMRVIRSESDLAREVTEAKREAKAAFGKDEVYLEKLVENARHVESQILGDT 225

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGIS 244
             +               ++  +       PA  +  +  +E+   +    +A G  G  
Sbjct: 226 HGNAV-----HLFERDCSVQRRNQKVVERAPAPYLSEEQRQELAAYSLKIARATGYIGAG 280

Query: 245 RSDFLFDPLSRKVFWLEINV 264
             ++L D  + K +++E+N 
Sbjct: 281 TVEYLMDADTGKFYFIEVNP 300


>gi|262371626|ref|ZP_06064905.1| acetyl-CoA carboxylase, biotin carboxylase [Acinetobacter junii
           SH205]
 gi|262311651|gb|EEY92736.1| acetyl-CoA carboxylase, biotin carboxylase [Acinetobacter junii
           SH205]
          Length = 652

 Score = 81.7 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 75/220 (34%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+           I +      A  L   K  SK  +   GVP  P    
Sbjct: 78  AVHPGYGFLSENTDFAQACSDHGITFIGPNAAAIHLMGSKRLSKIAMIEAGVPCVPGYEG 137

Query: 114 NRFTM----DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS-----SWNHGD 164
           +R  +    +    I  P ++K   GG   G+ ++ +   +   L  +      ++  G+
Sbjct: 138 DRQDIEYLAEQAEKIGFPLMVKASAGGGGRGMRLVHQSADLLEALKTARSEAENAFGSGE 197

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
            ++ +  +    +   V GD   +   +            K             +  ++ 
Sbjct: 198 LIIEKAVIAPRHVEIQVFGDTHGNYVYLFERDCSIQRRHQK----VVEEAPCPVMTPELR 253

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +++   A  A +A    G    +FL D  S + ++LE+N 
Sbjct: 254 QQMGEAAVAAAKACDYIGAGTVEFLLD-HSGEFYFLEMNT 292


>gi|262195329|ref|YP_003266538.1| carbamoyl-phosphate synthase L chain ATP- binding protein
           [Haliangium ochraceum DSM 14365]
 gi|262078676|gb|ACY14645.1| Carbamoyl-phosphate synthase L chain ATP- binding protein
           [Haliangium ochraceum DSM 14365]
          Length = 1912

 Score = 81.7 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 42/239 (17%), Positives = 84/239 (35%), Gaps = 15/239 (6%)

Query: 34  SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDK 93
           S +D DR +   L   + +  + V  G   E      + + + + +            DK
Sbjct: 78  SYLDYDR-LERALRETRAEAVW-VGWGFVSEHAAFADLCQRMGVVFIGPSGDVMRKLGDK 135

Query: 94  MRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS 149
           +RSKQ+     VPV P     +            I  P ++K   GG   GI  +   ++
Sbjct: 136 IRSKQIAEEAQVPVAPWSNGPVATLEDARAHAERIGYPLMVKATAGGGGRGIRKVVSAEA 195

Query: 150 IPLDLL----QSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYEL 204
           +         ++      D + +E+ V G   +   ++ D       + V          
Sbjct: 196 LDEAFESARTEALRGFGDDTVFLERMVTGARHVEVQLVADQHGTTWALGVRDCSIQRRNQ 255

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
           K             +     +E++  A    QA+G +     +FL+D  +++  ++E+N
Sbjct: 256 KVL----EETPSPALSEQQDRELRAAAVRLGQAVGYQNAGTVEFLYDEANQRFSFMEVN 310


>gi|187777419|ref|ZP_02993892.1| hypothetical protein CLOSPO_00986 [Clostridium sporogenes ATCC
           15579]
 gi|187774347|gb|EDU38149.1| hypothetical protein CLOSPO_00986 [Clostridium sporogenes ATCC
           15579]
          Length = 448

 Score = 81.7 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 81/220 (36%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  FG   E+     + +   I +            +K  ++ ++   GVPV P    
Sbjct: 77  AIHPGFGFLSENSKFANMCKDCNIVFIGPDSETIDKVGNKSNARDIMIRAGVPVIPGSNG 136

Query: 111 ILVNRFT-MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
           ++ N    ++    I  P V+K   GG   GI ++   +++      + S        D 
Sbjct: 137 VIHNEEEALNIAEEIGYPVVVKASAGGGGRGIRIVHSKENMIKAFNTAKSEAKGAFGDDS 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+++     +   ++GD   ++  +            K            ++  ++ 
Sbjct: 197 MYVEKFIKNPRHIEFQILGDNYGNIIHLGERDCSLQRRNQKVL----EEAPSPRMNEELR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K +  +A  A +A+  +     +FL D      +++E+N 
Sbjct: 253 KRMGDVAIKAAKAVEYKNAGTIEFLLDE-DGSFYFMEMNT 291


>gi|323698354|ref|ZP_08110266.1| carbamoyl-phosphate synthase, large subunit [Desulfovibrio sp.
           ND132]
 gi|323458286|gb|EGB14151.1| carbamoyl-phosphate synthase, large subunit [Desulfovibrio
           desulfuricans ND132]
          Length = 1077

 Score = 81.7 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 44/278 (15%), Positives = 100/278 (35%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G++V  +         D +             +V  ++   +PD    
Sbjct: 29  SGTQALKALKEEGYEVVLVNSNPASIMTDPELADATYIEPIEPETVARIIEKERPDALLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G  G +  +      +L+   +    + I     +  +   ++ + + G+ +  S +
Sbjct: 89  TLGGQTGLNTALAVADMGVLDKFGVELIGANIDVINKAESREEFREAMRNIGLHMPESGI 148

Query: 113 VNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +      +    I  P +++P       G  V    + +        + +   ++++E+
Sbjct: 149 CHNMDDVREWGEKIPFPIIVRPAYTLGGSGGGVAYNMEELEQICANGLALSMKHEIMLER 208

Query: 171 YVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            + G  E    VM D   + V   ++   D           +S  V PA+ +  D Y+ +
Sbjct: 209 SILGWKEYELEVMRDKKDNCVIICSIENLDPMGVHT----GDSVTVAPAQTLTDDEYQRL 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P   ++  +E+N 
Sbjct: 265 RDASLAVMREIGVETGGSNVQFAVNPEDGELIIIEMNP 302



 Score = 58.6 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/224 (13%), Positives = 82/224 (36%), Gaps = 12/224 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--FTMDSQHLISPPYV 129
           L    +P   +   A   + D+ R KQ ++   +   P+          +    ++ P V
Sbjct: 658 LMNAGVPLIGTSPDAIDRAEDRERFKQFLNKLNLRQPPNGTAMSMVEAREIAEKLTFPLV 717

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLD 188
           ++P       G+ ++            S+  +     LI+++++  +E+    + D    
Sbjct: 718 LRPSYVLGGRGMDIVYSMDEFDHYFRHSALVSPEHPTLIDKFLENAVEVDVDALADGEDV 777

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                +   +       +S  +++ + P  +  ++ +E++R      + +G  G+    F
Sbjct: 778 YIGGVMEHIEEAGI---HSGDSASVLPPYSLSSELIREIERQTVAMAKELGVVGLMNVQF 834

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
                  +V+ +E+N +   T     P ++   G    +L   +
Sbjct: 835 AI--KDNEVYIIEVNPRASRT----VPFVSKATGVPLAKLATRV 872


>gi|301165503|emb|CBW25074.1| biotin carboxylase [Bacteriovorax marinus SJ]
          Length = 447

 Score = 81.7 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 80/221 (36%), Gaps = 18/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  FG   E+     +     + +    +       DK+ SK++  + GVP+   I V
Sbjct: 78  AIHPGFGFLSENKEFAQMCAKWGVEFIGPNVECIEKMGDKIISKEIAEAAGVPILKPIAV 137

Query: 114 N----RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGDQ 165
           N    +  +     +  P ++K   GG   G+  I+    + + +     ++ +    D 
Sbjct: 138 NGREDKDILADVEEMGLPVLVKASAGGGGRGMKKIEDISDLLVTITRLKTEAKAGFGDDT 197

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           L IE++V     +   +M D   +V              ++          P   +  + 
Sbjct: 198 LFIEKFVTNPRHVEVQIMADRHGNVL-----HLGERDCTVQRRFQKVVEESPCPVLSEEK 252

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             E+   A    + +    +   ++L+D    K +++E+N 
Sbjct: 253 RAEICESAVALAKHVNYDSVGTVEYLYDQDEDKFYFMEMNT 293


>gi|206901331|ref|YP_002251484.1| carbamoyl-phosphate synthase, large subunit [Dictyoglomus
           thermophilum H-6-12]
 gi|206740434|gb|ACI19492.1| carbamoyl-phosphate synthase, large subunit [Dictyoglomus
           thermophilum H-6-12]
          Length = 1054

 Score = 81.7 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 60/288 (20%), Positives = 111/288 (38%), Gaps = 37/288 (12%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQID---------------------VDRSVGLV 45
           G ++E + S   G     AL++ G +V  I+                         V  +
Sbjct: 18  GQAAEFDYS---GTQACKALKEEGVEVVLINSNPATIMTDWEMADRIYIEPITAEVVERI 74

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   KPD     L G  G +  ++     ILE   +P   + + + +++ D+   ++ + 
Sbjct: 75  IEKEKPDGIIATLGGQTGLNLAMELASAGILEKYGVPLLGASLESISMAEDRELFRKRME 134

Query: 102 SCGVPVCPSILVNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G PV PS++V       +   +I  P VI+P       G  +++  +     LL+S  
Sbjct: 135 EIGEPVLPSVVVRSMEEGRKALEIIGLPLVIRPAYTLGGTGGGIVETFEEFEKALLRSLR 194

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVT-EIAVPKSDFYSYELKYSSLNSTHVLPA 217
            +   Q L+E+ V G  E+   VM D   +V    ++   D           +S  V P 
Sbjct: 195 LSPVSQALLEKSVVGWKEIEFEVMRDRKGNVITVCSMENVDPMGIHT----GDSIVVAPT 250

Query: 218 KIPLDIYKEVQRLA-FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +   DI  ++ R A      A+   G     +  +P  R+ + +E+N 
Sbjct: 251 QTLTDIEYQMLRTASLKIITALKIEGGCNIQYALNPNKREYYVIEVNP 298



 Score = 62.1 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/206 (13%), Positives = 72/206 (34%), Gaps = 21/206 (10%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ--HLISPPYV 129
           LE        +   +  L+ D+ +  + +    +P      +       +    I  P +
Sbjct: 645 LEKRGFYLLGTSQKSIDLAEDREKFDRFLKRNKIPRPKGFYIRSLEEAKEVIEEIGFPVL 704

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL---IEQYVDGIELTCGVMGDAS 186
           ++P        +I++   + +         +   D +L   ++Q++ G E    ++ D  
Sbjct: 705 LRPSYVLGGRAMIIVHNMKDLE------DYFERKDIILPLWMDQFIVGKEAEVDLLCDGK 758

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISR 245
               E+ +P    +  +    S +ST V P   +  ++  ++   +      +  +G+  
Sbjct: 759 ----EVFIPGVMEHIEKAGIHSGDSTTVFPHYTLSQEVIDKIVDYSTKIALGLEVKGLLN 814

Query: 246 SDFLFDPLSRKVFWLEIN-----VQP 266
             ++      +V+ LE N       P
Sbjct: 815 IQYVISSKDEEVYVLEANPRASRTIP 840


>gi|72383259|ref|YP_292614.1| acetyl-CoA carboxylase biotin carboxylase subunit [Prochlorococcus
           marinus str. NATL2A]
 gi|72003109|gb|AAZ58911.1| acetyl-CoA carboxylase, biotin carboxylase [Prochlorococcus marinus
           str. NATL2A]
          Length = 447

 Score = 81.7 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 77/220 (35%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+     I     + +      A     DK  +K  +   GVP  P    
Sbjct: 78  AIHPGYGFLAENDRFAEICGDHGLIFVGPSPHAIRSMGDKSTAKSTMQKVGVPTVPGSEG 137

Query: 112 LVNRFTMDS--QHLISPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSWNHGDQ 165
           L++  +  S     +  P +IK   GG   G+ ++     +         ++ +      
Sbjct: 138 LLDSVSDASKLASEMGYPVMIKATAGGGGRGMRLVNHSDELENLFKAAQGEAEAAFGNPG 197

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           L +E+++D    +   ++ D   +V  +            K    +     PA +   + 
Sbjct: 198 LYMEKFIDRPRHVEVQILADRFGNVVHLGERDCSIQRRHQKLLEESP---SPA-LDDHLR 253

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +   A  A ++I   G    +FL D  +   +++E+N 
Sbjct: 254 IRMGEAAVAAAKSINYEGAGTVEFLLD-RNGSFYFMEMNT 292


>gi|282908925|ref|ZP_06316743.1| acetyl-CoA carboxylase, biotin carboxylase [Staphylococcus aureus
           subsp. aureus WW2703/97]
 gi|282327189|gb|EFB57484.1| acetyl-CoA carboxylase, biotin carboxylase [Staphylococcus aureus
           subsp. aureus WW2703/97]
          Length = 429

 Score = 81.7 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 41/220 (18%), Positives = 78/220 (35%), Gaps = 18/220 (8%)

Query: 56  NVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
           N +H  +G   E       +E   I +         +  DK+ ++Q V   GVPV P   
Sbjct: 51  NAIHPGYGFLSESTKFAQTVEEQGIAFIGPTKKTMEMMGDKITARQTVHHAGVPVIPGSN 110

Query: 111 --ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS----WNHGD 164
             +            I  P VIK   GG   GI ++KK + +     ++ S    +   D
Sbjct: 111 DAVNHVSEIEKLAKDIGYPVVIKAASGGGGKGIRIVKKAEDLEKAFKEAKSEGKKYFDDD 170

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           ++ +E ++     +   VMGD   +   +            + +         A +  + 
Sbjct: 171 RVYVEAFIPVAKHVEVQVMGDGQDNYVHLGERDCSV----QRKNQKLIEESPCAALTEER 226

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            +++   A    +A   R     +FL        +++E+N
Sbjct: 227 RQQICNDAVKVARAANYRSAGTIEFLVT--DNAHYFIEMN 264


>gi|193872870|gb|ACF23125.1| D-alanine-D-alanine ligase [Streptococcus mitis]
          Length = 96

 Score = 81.7 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 48/96 (50%), Gaps = 2/96 (2%)

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNST 212
               ++ +  ++L  Q V+  E+  G++G+  +  T     V    FY Y+ KY     T
Sbjct: 1   ALKLAFQYDSRVLGRQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKIT 60

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
             +PAKI  D+   +++ A  A +AIG  G+SR DF
Sbjct: 61  MDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDF 96


>gi|218780393|ref|YP_002431711.1| acetyl-CoA carboxylase, biotin carboxylase [Desulfatibacillum
           alkenivorans AK-01]
 gi|218761777|gb|ACL04243.1| Acetyl-CoA carboxylase, biotin carboxylase [Desulfatibacillum
           alkenivorans AK-01]
          Length = 462

 Score = 81.7 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 38/197 (19%), Positives = 77/197 (39%), Gaps = 14/197 (7%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIK 131
            I +        AL+ DK+ +K  +   GVPV PS    +       +    I  P ++K
Sbjct: 99  GITFIGPKPDNLALAGDKIAAKTAMQKAGVPVTPSSPGGVDTVAEAKEFAKEIGYPIMVK 158

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQLLIEQYVD-GIELTCGVMGDAS 186
              GG   GI +   D+ +  +   +          D++ +E+++     +   ++ D  
Sbjct: 159 ASGGGGGRGIKICFNDEEVEEEFPMAKMEGRTAFGNDEVYVEKFLTKPRHIEFQILADKQ 218

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRS 246
            +V  +   +    S + +Y  L      PA +  ++   + + A  A +A+        
Sbjct: 219 GNVIHLGERE---CSIQRRYQKLVEESPSPA-LTPELRAAMGQAAINAAKAVDYENAGTV 274

Query: 247 DFLFDPLSRKVFWLEIN 263
           +FL D      +++EIN
Sbjct: 275 EFLLDG-DMNFYFMEIN 290


>gi|195452540|ref|XP_002073398.1| GK14105 [Drosophila willistoni]
 gi|194169483|gb|EDW84384.1| GK14105 [Drosophila willistoni]
          Length = 701

 Score = 81.7 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 80/221 (36%), Gaps = 18/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H  +G   E      + +   + +      A      K  SK ++++ GVP+      
Sbjct: 103 AIHPGYGFLSESVEFAELCQKEGVIFMGPPSSAIRDMGIKSTSKAIMAAAGVPIINGYHG 162

Query: 113 ---VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
               +        +I  P +IK ++GG   G+ + +K +     L  + + +        
Sbjct: 163 KDQSDECLQAEAKIIGFPLMIKAVRGGGGKGMRIAEKPEDFLSALNSARTESQKSFGDSS 222

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           +L+E+YV     +   V  D   +   +           ++          PA  +  ++
Sbjct: 223 VLLERYVRSPRHVEVQVFADQYGEAVYLWE-----RDCSVQRRHQKIIEEAPAPGLSEEL 277

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +E+   A  A +A+G  G    +F+ D       ++E+N 
Sbjct: 278 RRELGEAAVRAAKAVGYVGAGTVEFILDKEDLSFHFMEMNT 318


>gi|168181064|ref|ZP_02615728.1| acetyl-CoA carboxylase, biotin carboxylase [Clostridium botulinum
           NCTC 2916]
 gi|182668134|gb|EDT80113.1| acetyl-CoA carboxylase, biotin carboxylase [Clostridium botulinum
           NCTC 2916]
          Length = 448

 Score = 81.7 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 81/220 (36%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  FG   E+     + +   I +            +K  ++ ++   GVPV P    
Sbjct: 77  AIHPGFGFLSENSKFANMCKDCNIVFIGPDSETIDKVGNKSNARDIMIRAGVPVIPGSNG 136

Query: 111 ILVNRFT-MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
           ++ N    ++    I  P V+K   GG   GI ++   +++      + S        D 
Sbjct: 137 VIHNEEEALNIAEEIGYPVVVKASAGGGGRGIRIVHSKENMIKAFNTAKSEAKGVFGDDS 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+++     +   ++GD   ++  +            K            ++  ++ 
Sbjct: 197 MYVEKFIKNPRHIEFQILGDNYGNIIHLGERDCSLQRRNQKVL----EEAPSPRMNEELR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K +  +A  A +A+  +     +FL D      +++E+N 
Sbjct: 253 KRMGDVAIKAAKAVEYKNAGTIEFLLDE-DGSFYFMEMNT 291


>gi|284929034|ref|YP_003421556.1| biotin carboxylase /acetyl-CoA carboxylase carboxyltransferase
           subunit alpha [cyanobacterium UCYN-A]
 gi|284809493|gb|ADB95198.1| biotin carboxylase /acetyl-CoA carboxylase carboxyltransferase
           subunit alpha [cyanobacterium UCYN-A]
          Length = 449

 Score = 81.7 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 80/220 (36%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     I    +I +            DK  +K+ +   GVP  P    
Sbjct: 78  AIHPGYGFLSENARFAEICADHKIVFIGPSPEVIDAMGDKSTAKKTMQKAGVPTIPGSWG 137

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL----DLLQSSSWNHGDQ 165
            +      +     I  P +IK   GG   G+ +++++   P        ++ ++     
Sbjct: 138 LLESKENALSIARDIGYPVIIKATAGGGGKGMRLVREESEFPRLFQIAQREAEAFFGNPS 197

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E++++    +   ++ D+  +V  +            K             + L + 
Sbjct: 198 VYLEKFIENPRHIEFQILADSYGNVIHLGERDCSIQRRHQKLL----EEAPSPFLTLQLR 253

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K++   A  A ++I   G    +FL D  S   +++E+N 
Sbjct: 254 KKMGDAAIKAAKSINYVGAGTIEFLVDSQSN-FYFMEMNT 292


>gi|226951049|ref|YP_002806140.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Clostridium
           botulinum A2 str. Kyoto]
 gi|226844446|gb|ACO87112.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Clostridium
           botulinum A2 str. Kyoto]
          Length = 448

 Score = 81.7 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 81/220 (36%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  FG   E+     + +   I +            +K  ++ ++   GVPV P    
Sbjct: 77  AIHPGFGFLSENSKFANMCKDCNIVFIGPDSETIDKVGNKSNARDIMIRAGVPVIPGSNG 136

Query: 111 ILVNRFT-MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
           ++ N    ++    I  P V+K   GG   GI ++   +++      + S        D 
Sbjct: 137 VIHNEEEALNIAEEIGYPVVVKASAGGGGRGIRIVHSKENMIKAFNTAKSEAKGAFGDDS 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+++     +   ++GD   ++  +            K            ++  ++ 
Sbjct: 197 MYVEKFIKNPRHIEFQILGDNYGNIIHLGERDCSLQRRNQKVL----EEAPSPRMNEELR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K +  +A  A +A+  +     +FL D      +++E+N 
Sbjct: 253 KRMGDVAIKAAKAVEYKNAGTIEFLLDE-DGSFYFMEMNT 291


>gi|163731532|ref|ZP_02138979.1| acetyl-CoA carboxylase subunit A [Roseobacter litoralis Och 149]
 gi|161394986|gb|EDQ19308.1| acetyl-CoA carboxylase subunit A [Roseobacter litoralis Och 149]
          Length = 450

 Score = 81.7 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 77/221 (34%), Gaps = 20/221 (9%)

Query: 57  VLHGNFG---ED-GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--- 109
            +H  +G   E+ G VQ I+E   I +         +  DK+ +K  + + GVP  P   
Sbjct: 77  AIHPGYGFLSENAGFVQ-IVEDHGISFIGPTAEHIRVMGDKITAKDTMKNLGVPCVPGSE 135

Query: 110 -SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GD 164
             +            I  P +IK   GG   G+ V +  + +    + + +        D
Sbjct: 136 GGVPTLEDAQRIGAEIGYPVIIKATAGGGGRGMKVAQNAEDMEKAFMTARAEGKSNFGND 195

Query: 165 QLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           ++ IE+Y+     +   V GD       +            K             I  + 
Sbjct: 196 EVYIEKYLTTPRHIEIQVFGDGKGRAVHLGERDCSLQRRHQKVF----EEAPGPSISAEE 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              + ++   A   I   G    +FL+   + + +++E+N 
Sbjct: 252 RMAIGKVCADAVARINYIGAGTIEFLY--ENGEFYFIEMNT 290


>gi|330923773|ref|XP_003300369.1| hypothetical protein PTT_11603 [Pyrenophora teres f. teres 0-1]
 gi|311325526|gb|EFQ91540.1| hypothetical protein PTT_11603 [Pyrenophora teres f. teres 0-1]
          Length = 509

 Score = 81.7 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 38/219 (17%), Positives = 76/219 (34%), Gaps = 16/219 (7%)

Query: 58  LHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
           +H  +G   E+           + +      A      K  SK +++  GVP  P    +
Sbjct: 106 IHPGYGFLSENPTFARKCTDAGLTFIGPPWQAIESMGSKSESKDIMTKAGVPCIPGYHGS 165

Query: 115 RFT----MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQL 166
                   +    I  P ++K +KGG   G+ ++  +      L  + S        + +
Sbjct: 166 NQDPQYLKEQAASIGYPVLLKAVKGGGGKGMRIVNTEAEFFDQLESAKSEARNSFGDEIM 225

Query: 167 LIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
           L+E+Y+     +   V  D   +   +            K             +   I +
Sbjct: 226 LVEKYITTPRHIEVQVFADKHGNCVALGERDCSIQRRHQKIL----EESPAPHLDEAIRQ 281

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           ++   A  A  A+G  G    +F+FD  + + F++E+N 
Sbjct: 282 DIWEKARQAALAVGYEGAGTVEFIFDNDTGEFFFMEMNT 320


>gi|312865548|ref|ZP_07725775.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Streptococcus
           downei F0415]
 gi|311099066|gb|EFQ57283.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Streptococcus
           downei F0415]
          Length = 461

 Score = 81.7 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 78/220 (35%), Gaps = 16/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  FG   E+     + E ++I +            DK+ ++  +    VPV P    
Sbjct: 83  AIHPGFGFLSENSKFATMCEEMKIKFIGPSGAIMDKMGDKINARSEMIKAQVPVIPGSDG 142

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
            ++     +     I  P ++K   GG   GI  ++K + +         ++ +      
Sbjct: 143 EVMTAEDALKVADEIGYPVMLKASAGGGGKGIRKVEKAEDLVPAFESASQEALAAFGNGA 202

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+ +     +   ++GD+  +V  +            K             I   + 
Sbjct: 203 MYIEKVIYPARHIEVQILGDSHGNVIHLGERDCSLQRNNQKVL----EESPSIAIGASLR 258

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            ++   A  A +A+G       +FL D  S   +++E+N 
Sbjct: 259 SKMGDAAVRAAKAVGYENAGTIEFLLDETSGNFYFMEMNT 298


>gi|302338798|ref|YP_003804004.1| acetyl-CoA carboxylase, biotin carboxylase [Spirochaeta smaragdinae
           DSM 11293]
 gi|301635983|gb|ADK81410.1| acetyl-CoA carboxylase, biotin carboxylase [Spirochaeta smaragdinae
           DSM 11293]
          Length = 439

 Score = 81.7 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 36/234 (15%), Positives = 82/234 (35%), Gaps = 16/234 (6%)

Query: 39  DRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQ 98
            R++         D     + G   E+    A +E   + +        A   DK+ +K+
Sbjct: 63  KRNLIAAAVASGCDAVHPGV-GFLSENADFAADVEKAGLIFIGPRPETIAFLGDKVAAKR 121

Query: 99  VVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154
                G+PV P     +      +     +  P ++K   GG   G+ +++ +  +   +
Sbjct: 122 TAQEAGLPVIPGSEGAVEDAEAALSFARKVGFPVIVKAASGGGGKGMRIVRDESQLASAM 181

Query: 155 L----QSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209
                ++ +      L +E+Y++    +   ++GD   +V  +            K    
Sbjct: 182 KIAGHEAETAFSDGTLYLEKYLENPRHVEVQLLGDGKGNVVHLGERDCSMQLRHQK---- 237

Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
                    I   I +++   +    + +  RG    +FLFD      +++E+N
Sbjct: 238 LVEESPSPGISPAIREDMCSNSVRLFEKLSYRGAGTIEFLFD--GENYYFMEVN 289


>gi|255557562|ref|XP_002519811.1| Biotin caboxylase subunit (BC) of Het-ACCase [Ricinus communis]
 gi|223541050|gb|EEF42607.1| Biotin caboxylase subunit (BC) of Het-ACCase [Ricinus communis]
          Length = 541

 Score = 81.7 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 82/220 (37%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
           +LH  +G   E+ +   + +   I +      +  +  DK  +++ + + GVP  P    
Sbjct: 153 MLHPGYGFLAENAVFVEMCKEHGINFIGPNPDSIRVMGDKSTARETMKNAGVPTVPGSEG 212

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS----IPLDLLQSSSWNHGDQ 165
            +      +   H I  P +IK   GG   G+ + K+       +     ++++    D 
Sbjct: 213 LLQSTEEAVKLAHEIGFPVMIKATAGGGGRGMRLAKEPGEFVKLLQQAKSEAAAAFGNDG 272

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+Y+ +   +   V+ D   +V               K             +  ++ 
Sbjct: 273 VYLEKYIQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLL----EEAPSPALTPELR 328

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K +   A  A  +IG  G+   +FL D      +++E+N 
Sbjct: 329 KAMGDAAVAAAASIGYIGVGTVEFLLDER-GSFYFMEMNT 367


>gi|195390801|ref|XP_002054056.1| GJ23005 [Drosophila virilis]
 gi|194152142|gb|EDW67576.1| GJ23005 [Drosophila virilis]
          Length = 694

 Score = 81.7 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 81/222 (36%), Gaps = 20/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E      + +   + +      A      K  SK ++++ GVP+      
Sbjct: 99  AIHPGYGFLSESVEFAELCQKEGVIFMGPPSSAIRDMGIKSTSKAIMAAAGVPIINGYHG 158

Query: 114 NRFT----MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS-----SWNHGD 164
           +  +         +I  P +IK ++GG   G+ + +K +     L  +      ++    
Sbjct: 159 DDQSDACLQAEAAVIGFPLMIKAVRGGGGKGMRIAEKPEDFLTALNSARTESLKAFG-DS 217

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            +L+E+YV     +   V  D   D   +           ++          PA  +  +
Sbjct: 218 SVLLERYVRSPRHVEVQVFADQYGDAVYLWE-----RDCSVQRRHQKIIEEAPAPGLSEE 272

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +E+   A  A +A+G  G    +F+ D       ++E+N 
Sbjct: 273 LRRELGEAAVRAAKAVGYVGAGTVEFILDKEDLSFHFMEMNT 314


>gi|8886469|gb|AAF80469.1|AF163150_1 acetyl-CoA carboxylase [Glycine max]
          Length = 539

 Score = 81.7 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 80/220 (36%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
           +LH  +G   E+ +   +     I +      +  +  DK  +++ +   GVP  P    
Sbjct: 147 MLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRVMGDKATARETMKKAGVPTVPGSDG 206

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS----IPLDLLQSSSWNHGDQ 165
            +      +   + I  P +IK   GG   G+ + K+       +     ++++    D 
Sbjct: 207 LLQSTEEAIRLANEIGFPVMIKATAGGGGRGMRLAKEPAELVKFLQQAKSEAAAAFGNDG 266

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+Y+ +   +   V+ D   +V               K             +  ++ 
Sbjct: 267 VYLEKYIQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLL----EEAPSPALTPELR 322

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K +   A  A  +IG  G+   +FL D      +++E+N 
Sbjct: 323 KAMGDAAVAAAASIGYIGVGTVEFLLDER-GSFYFMEMNT 361


>gi|86137320|ref|ZP_01055897.1| acetyl-CoA carboxylase [Roseobacter sp. MED193]
 gi|85825655|gb|EAQ45853.1| acetyl-CoA carboxylase [Roseobacter sp. MED193]
          Length = 449

 Score = 81.7 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 74/220 (33%), Gaps = 18/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---- 109
            +H  +G   E+     I+E   + +            DK+ +K      G+PV P    
Sbjct: 77  AVHPGYGFLSENANFVQIIEDHGLTFIGPSAADIRTMGDKITAKDTAQKLGIPVVPGSEG 136

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGDQ 165
            +        +   +  P +IK   GG   G+ V      I +       ++ +    D+
Sbjct: 137 GVPDVESARKAAADMGYPVIIKATAGGGGRGMKVATSAADIDVAFSTARSEAKAAFGNDE 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+Y+     +   V GD   +   +A           K             I  +  
Sbjct: 197 VYMEKYLQKPRHIEVQVFGDGKGNGVHLAERDCSLQRRHQKVF----EEAPGPCITPEER 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             + ++   A  A+   G    +FL+     + +++E+N 
Sbjct: 253 ARIGKICADAVGAMSYSGAGTVEFLY--EDGEFYFIEMNT 290


>gi|3219361|gb|AAC23573.1| biotin carboxylase precursor [Glycine max]
          Length = 539

 Score = 81.7 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 80/220 (36%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
           +LH  +G   E+ +   +     I +      +  +  DK  +++ +   GVP  P    
Sbjct: 147 MLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRVMGDKATARETMKKAGVPTVPGSDG 206

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS----IPLDLLQSSSWNHGDQ 165
            +      +   + I  P +IK   GG   G+ + K+       +     ++++    D 
Sbjct: 207 LLQSTEEAIRLANEIGFPVMIKATAGGGGRGMRLAKEPAEFVKFLQQAKSEAAAAFGNDG 266

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+Y+ +   +   V+ D   +V               K             +  ++ 
Sbjct: 267 VYLEKYIQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLL----EEAPSPALTPELR 322

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K +   A  A  +IG  G+   +FL D      +++E+N 
Sbjct: 323 KAMGDAAVAAAASIGYIGVGTVEFLLDER-GSFYFMEMNT 361


>gi|330686001|gb|EGG97624.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Staphylococcus
           epidermidis VCU121]
          Length = 452

 Score = 81.7 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 35/216 (16%), Positives = 79/216 (36%), Gaps = 15/216 (6%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS---ILVNR 115
           +G   E+G    + E  ++ +      +      K  +K  +    VPV P    ++ N 
Sbjct: 81  YGFLAENGDFAELCEACQLKFIGPSHESIQKMGIKDVAKAEMIKANVPVVPGSEGLVHNI 140

Query: 116 FTMDS-QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGDQLLIE 169
                    I  P +IK   GG   GI V + ++ +            +++ +G   L E
Sbjct: 141 DDAKKVAKKIGYPVIIKATAGGGGKGIRVARDEKELETGYRMTQQEAETAFGNGGLYL-E 199

Query: 170 QYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           ++++    +   ++GD+  +V  +            +             +  +  +E+ 
Sbjct: 200 KFIENFRHIEIQIIGDSYGNVIHLGERDCTI----QRRMQKLVEEAPSPILSEETRQEMG 255

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             A  A +A+        +F++D    K +++E+N 
Sbjct: 256 NAAIRAAKAVNYENAGTIEFIYDLNDDKFYFMEMNT 291


>gi|91976665|ref|YP_569324.1| allophanate hydrolase subunit 2 [Rhodopseudomonas palustris BisB5]
 gi|91683121|gb|ABE39423.1| Allophanate hydrolase subunit 2 [Rhodopseudomonas palustris BisB5]
          Length = 1183

 Score = 81.7 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 42/256 (16%), Positives = 91/256 (35%), Gaps = 30/256 (11%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      L    I +             K +++++    GVP+ P   +
Sbjct: 77  AVHPGYGFLSENRGFAERLAQHGIAFIGPRPEHLDAFGLKHKAREIAQQSGVPLLPGSDL 136

Query: 114 NRFTMDS---QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ----SSSWNHGDQL 166
                D+      I  P ++K   GG  +G+ +   + ++          + +     ++
Sbjct: 137 LETIDDALVEAARIGFPLMLKSTAGGGGIGMQLCHDEATLRERFATVQRTARASFGDARV 196

Query: 167 LIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIY 224
            +E+YV     +   + GD    V  +           L+  +       PA  I  ++ 
Sbjct: 197 YLERYVAVARHIEVQIFGDGKGHVVALGE-----RDCSLQRRNQKVVEETPAPGISEEMR 251

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI---FPEMAAYA 281
           + + + A    Q++        +F++D      ++LE+N +       +    P   A  
Sbjct: 252 RRLHQAAVTLGQSVAYESAGTVEFIYDVEREDFYFLEVNTR-------LQVEHPVTEAVF 304

Query: 282 GYSFRELLLWMVEDAS 297
           G    +L+ WMV  A+
Sbjct: 305 GI---DLVEWMVRQAA 317


>gi|327439742|dbj|BAK16107.1| biotin carboxylase [Solibacillus silvestris StLB046]
          Length = 454

 Score = 81.7 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 34/214 (15%), Positives = 80/214 (37%), Gaps = 12/214 (5%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS---ILVNR 115
           +G   E+       E   I +      A  +   K  ++  + +  VP+ P    +    
Sbjct: 81  YGFLAENAAFAEACENAGIKFIGPSSDAIKIMGIKDVARDTMEAANVPLVPGTGIVPNIE 140

Query: 116 FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQLLIEQY 171
              +    I  P +IK   GG   GI V + ++ +   +     ++++      + +E++
Sbjct: 141 TGKEWAAKIGYPVIIKATAGGGGKGIRVARTEEELVKGIEITQKEAAAAFGNPGVYLEKF 200

Query: 172 VDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
           ++        V+ D+  +V  +        + + +   L      PA +  +   E+   
Sbjct: 201 IEYFRHCEIQVLADSHGNVVHLGERD---CTVQRRMQKLVEEAPSPA-LSEERRAEMGEA 256

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           A  A +A    G    +F++D    + +++E+N 
Sbjct: 257 AVKAAKACNYEGAGTIEFIYDYQEDRFYFMEMNT 290


>gi|210623371|ref|ZP_03293768.1| hypothetical protein CLOHIR_01718 [Clostridium hiranonis DSM 13275]
 gi|210153632|gb|EEA84638.1| hypothetical protein CLOHIR_01718 [Clostridium hiranonis DSM 13275]
          Length = 1068

 Score = 81.7 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 46/286 (16%), Positives = 100/286 (34%), Gaps = 33/286 (11%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQIDVDR---------------------SVGLV 45
           G ++E + S   G     AL++ G +V  ++ +                      ++  +
Sbjct: 21  GQAAEFDYS---GTQACQALKEDGKEVILVNSNPATIMTDNAMADKIYIEPLTVTTLKRI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   +PD   + L G       +Q      LE + +    +       + D+   K  + 
Sbjct: 78  IEKERPDSILSTLGGQTALTLSMQLAKEGYLEKMGVKLLGADPETIDKAEDRQMFKDTML 137

Query: 102 SCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G PV PS +V      ++    I  P +++P       G  +   ++           
Sbjct: 138 EIGQPVIPSEIVEDLDSAVEFAGKIGYPVIVRPAFTLGGSGGGIANDEEEFKKIAENGLR 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   Q+L+E+ + G  E+   V+ D + +   I V   + +     ++  +        
Sbjct: 198 LSPITQILVEKCISGWKEIEFEVVRDGAGNA--ITVCSMENFDPVGVHTGDSIVIAPAVT 255

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +    Y+ ++  A     A+G  G     F  +P S +   +E+N 
Sbjct: 256 LADKEYQMLRTAAIKIVDAMGVEGGCNCQFALNPNSDEYAVIEVNP 301



 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 50/287 (17%), Positives = 109/287 (37%), Gaps = 34/287 (11%)

Query: 18  SGKACASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH--------- 59
           S   C  AL+ AGF V  I         D D +  L    L P+   NV++         
Sbjct: 572 SAVHCVWALKKAGFDVVIINNNPETVSTDFDTADRLYFEPLTPEDVMNVMNTEKPYGVVV 631

Query: 60  GNFGEDGL-VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV--PVCPSILVNRF 116
              G+  + +   LE   I    S   +  ++ D+ R  +++ S  +  P   ++L    
Sbjct: 632 AFGGQTAINLTKFLESQGINVLGSSAESIDMAEDRERFDELLESLHIKRPQGHTVLTEDE 691

Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW-NHGDQLLIEQYVDGI 175
            + + + +  P +++P        +I+   D+ I   +          + +LI++Y+ G+
Sbjct: 692 ALKAANELGYPVLMRPSYVLGGQNMIIAFGDEDIKEYMKIILKSNKKDNPILIDKYMMGV 751

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLA 234
           E+    + D       I +P    +       S +S  V P   I   + +++   +   
Sbjct: 752 EVEVDAICDGE----GILIPGIMEHIERAGVHSGDSIAVCPSWNISEKLKEKIVEYSKQL 807

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPE 276
             ++  +G+   +  +     K++ +E+N       P ++ ++  P 
Sbjct: 808 AVSLKTKGL--VNIQYVIYEGKIYVIEVNPRSSRTIPYLSKITGVPM 852


>gi|254458203|ref|ZP_05071629.1| pyruvate carboxylase [Campylobacterales bacterium GD 1]
 gi|207085039|gb|EDZ62325.1| pyruvate carboxylase [Campylobacterales bacterium GD 1]
          Length = 359

 Score = 81.7 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 41/221 (18%), Positives = 80/221 (36%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E        E  E+ +         L  DKM SK  +   GVPV      
Sbjct: 78  AIHPGYGFLSESAEFAQACEDNELIFIGPKPKHIELFGDKMASKVAMKKIGVPVLEGTDT 137

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS----IPLDLLQSSSWNHGDQ 165
            I   +        I  P +IK   GG   G+ ++               +S  +     
Sbjct: 138 PITNMQEGEKIAQEIGYPVIIKAAFGGGGRGMRIVHFADEFSNMFDSATNESIKYFGKGD 197

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           + IE+YV +   +   V+ D+  +V  +            K        + P+  +  ++
Sbjct: 198 VFIEKYVQNPRHIEIQVVADSHGNVVHLGERDCSIQRRHQK-----VIEITPSPLLNDEV 252

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +++ +++  A + +G   +   +FL D     V+++E+N 
Sbjct: 253 RQKLCKISVDAMKELGYESVGTVEFLVDEKDN-VYFIEMNT 292


>gi|18379053|ref|NP_563674.1| MCCA; methylcrotonoyl-CoA carboxylase [Arabidopsis thaliana]
 gi|332189407|gb|AEE27528.1| methylcrotonoyl-CoA carboxylase subunit alpha [Arabidopsis
           thaliana]
          Length = 714

 Score = 81.7 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 41/220 (18%), Positives = 84/220 (38%), Gaps = 36/220 (16%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E      + E   + +      A     DK  SK+++ + GVP+ P    
Sbjct: 113 AIHPGYGFLSESSDFAQLCEDSGLTFIGPPASAIRDMGDKSASKRIMGAAGVPLVPGYHG 172

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP---LDLLQSSSWNHG-DQ 165
           +   +D        I  P +IKP  GG   G+ +++  +      L   + ++ + G + 
Sbjct: 173 HEQDIDHMKSEAEKIGYPIIIKPTHGGGGKGMRIVQSGKDFADSFLGAQREAAASFGVNT 232

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           +L+E+Y+     +   + GD   +V  +             Y    S           + 
Sbjct: 233 ILLEKYITRPRHIEVQIFGDKHGNVLHL-------------YERDCS-----------VQ 268

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +  Q++   A  A+G       +F+ D  S + +++E+N 
Sbjct: 269 RRHQKIIEEAPAAVGYYNAGTVEFIVDTESDQFYFMEMNT 308


>gi|45357904|ref|NP_987461.1| pyruvate carboxylase subunit A [Methanococcus maripaludis S2]
 gi|45047464|emb|CAF29897.1| pyruvate carboxylase subunit A [Methanococcus maripaludis S2]
          Length = 501

 Score = 81.7 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 38/235 (16%), Positives = 86/235 (36%), Gaps = 18/235 (7%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
             +  V      D      +G   E+           I +      A  +   K+ +K+ 
Sbjct: 64  ERILKVAEKAGVDAVHPG-YGFLSENVKFADECHKRGIEFIGPPTNAIDVMGSKINAKKA 122

Query: 100 VSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL- 154
           + + GVPV P    +  + +        I  P +IK   GG  +G+ V+   + +   + 
Sbjct: 123 MKTAGVPVLPGREESIESEEEAIEVADEIGYPVIIKASAGGGGIGMNVVYNKEELVDTIQ 182

Query: 155 ----LQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209
               +  S++     + IE+Y++    +   V+ D   +V  +   +        K    
Sbjct: 183 STKSIAQSAFG-DSTVFIEKYLEKPRHIEIQVVADKFGNVIHLGDRECSIQRRHQKLIEE 241

Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + + ++      ++ + +   A  A +AI    +   +FL+     + ++LE+N 
Sbjct: 242 SPSPIM----TEELRERMGNAAVKAAKAINYHSVGTVEFLYSK--GEFYFLEMNT 290


>gi|304404040|ref|ZP_07385702.1| carbamoyl-phosphate synthase, large subunit [Paenibacillus
           curdlanolyticus YK9]
 gi|304347018|gb|EFM12850.1| carbamoyl-phosphate synthase, large subunit [Paenibacillus
           curdlanolyticus YK9]
          Length = 1070

 Score = 81.7 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 55/287 (19%), Positives = 114/287 (39%), Gaps = 35/287 (12%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI---------DVD------------RSVGLV 45
           G ++E + +   G     AL + GF+V  I         D +              V  +
Sbjct: 21  GQAAEFDYA---GTQACQALMEEGFEVVLINSNPATIMTDTNMAHKVYIEPITLEFVSQI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   KPD     L G  G +  V+     +LE   +    + + A   + D+   ++++ 
Sbjct: 78  IRQEKPDGLLPTLGGQTGLNMAVELARAGVLERENVKLLGTQLDAIERAEDRDLFRELMR 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
               PV  S++V      +D  + I  P +++P       G  +   ++ +   +     
Sbjct: 138 ELEQPVPESVIVTTVEEAVDFANEIGYPIIVRPAYTLGGTGGGICANEEELLETVASGIR 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
           ++  +Q LIE+ + G  E+   VM DA+ +   I V   + +     ++  +S  V P++
Sbjct: 198 YSPINQCLIEKSIAGMKEVEYEVMRDANDN--CIVVCNMENFDPVGVHT-GDSIVVAPSQ 254

Query: 219 -IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +    Y+ ++  +    +A+   G     F  DP S + + +E+N 
Sbjct: 255 TLSDREYQMLRSASLKIIRALSIEGGCNVQFALDPHSYQYYVIEVNP 301



 Score = 69.4 bits (169), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 39/262 (14%), Positives = 90/262 (34%), Gaps = 28/262 (10%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ------ 69
           A++ AG++   I         D   S  L    L  +   NV+        +VQ      
Sbjct: 588 AIQKAGYEAVIINNNPETVSTDFSTSDRLYFEPLFFEDVMNVIEQEQPIGVIVQFGGQTA 647

Query: 70  ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHL 123
               A L    +    S + +   + D+ + + ++    +       V      +     
Sbjct: 648 INLAAPLAKAGVRILGSSLESIDAAEDRKKFEAMLRKLNIAQPEGSTVTNVDEAVAVAQG 707

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           +  P +++P        + ++  D  + L + ++   N    +LI++Y+ G E     + 
Sbjct: 708 LGYPVLVRPSYVLGGRAMEIVYSDTELLLYMKEAVKINPEHPVLIDRYMLGKEAEVDAIC 767

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRG 242
           D    +    +   +           +S  V P + +  DI +++  +     + +   G
Sbjct: 768 DGETVLIPGIMEHVERAGVHS----GDSIAVYPPQSLSDDIKQQIIDITIKIAKELQVIG 823

Query: 243 ISRSDFLFDPLSRKVFWLEINV 264
           +    F+      KV+ +E+N 
Sbjct: 824 LVNIQFVIHEE--KVYVIEVNP 843


>gi|94499578|ref|ZP_01306115.1| acetyl-CoA carboxylase multifunctional enzyme accADC, carboxyl
            transferase subunit alpha/carboxyl transferase subunit
            [Oceanobacter sp. RED65]
 gi|94428332|gb|EAT13305.1| acetyl-CoA carboxylase multifunctional enzyme accADC, carboxyl
            transferase subunit alpha/carboxyl transferase subunit
            [Oceanobacter sp. RED65]
          Length = 1621

 Score = 81.7 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 41/220 (18%), Positives = 80/220 (36%), Gaps = 18/220 (8%)

Query: 58   LH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS---- 110
            LH   G   E     A  E   I +    + +     +K  +     S  VPV P     
Sbjct: 1122 LHPGIGFLSESAQFAAFCENNNINFIGPRVSSMETMGNKSNAINTAISVDVPVVPGSHGI 1181

Query: 111  ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL-----DLLQSSSWNHGDQ 165
            +  +         I  P ++K + GG   GI V+++   I            S++ +GD 
Sbjct: 1182 VTTSAKAAKVADKIGYPVLLKAVHGGGGKGIQVVREPGEIHELFHQISTEARSAFGNGD- 1240

Query: 166  LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
            + +E++V     +   V+ D   +   + +          K    + +      +P  + 
Sbjct: 1241 VYLEKFVTSLRHIEVQVLRDGHGNCKVLGLRDCSVQRNNQKIIEESGS----VTLPDTLE 1296

Query: 225  KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            K+V   A     A+   G    +F++D  +  V+++E+N 
Sbjct: 1297 KKVYDYARKLADAVDYVGAGTVEFIYDLDANDVYFMEMNT 1336


>gi|87198630|ref|YP_495887.1| allophanate hydrolase subunit 2 [Novosphingobium aromaticivorans
           DSM 12444]
 gi|87134311|gb|ABD25053.1| Allophanate hydrolase subunit 2 [Novosphingobium aromaticivorans
           DSM 12444]
          Length = 1197

 Score = 81.7 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 41/220 (18%), Positives = 82/220 (37%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       E   I +             K  ++ + ++ GVP+ P   +
Sbjct: 78  AIHPGYGFLAENVEFAEACEKEGIVFIGPTPNNIRTFGLKHSARALAAAHGVPLAPGTDL 137

Query: 114 NRFTMDS---QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL---DLLQSSSWNHGDQ-L 166
                ++    + I  P ++K   GG  +G+ V + +  +      + +    N GD  +
Sbjct: 138 LTDETEAVQAANGIGYPVMLKATAGGGGIGMRVCEDEADVREGFSAVARQGLGNFGDAGV 197

Query: 167 LIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIY 224
            +E+Y+     +   + GD    +  +           L+  +       PA + P  + 
Sbjct: 198 FLERYIRQARHIEVQIFGDGRGRIVALGE-----RDCSLQRRNQKVVEEAPAPLLPPAVR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            E+   A    QA G R     +FL+D    + F+LE+N 
Sbjct: 253 SELIAAAIRLGQAAGYRSAGTVEFLYDAEREEFFFLEMNT 292


>gi|533707|gb|AAA67356.1| 3-methylcrotonyl-CoA carboxylase precursor [Arabidopsis thaliana]
          Length = 715

 Score = 81.7 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 41/220 (18%), Positives = 84/220 (38%), Gaps = 36/220 (16%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E      + E   + +      A     DK  SK+++ + GVP+ P    
Sbjct: 114 AIHPGYGFLSESSDFAQLCEDSGLTFIGPPASAIRDMGDKSASKRIMGAAGVPLVPGYHG 173

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP---LDLLQSSSWNHG-DQ 165
           +   +D        I  P +IKP  GG   G+ +++  +      L   + ++ + G + 
Sbjct: 174 HEQDIDHMKSEAEKIGYPIIIKPTHGGGGKGMRIVQSGKDFADSFLGAQREAAASFGVNT 233

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           +L+E+Y+     +   + GD   +V  +             Y    S           + 
Sbjct: 234 ILLEKYITRPRHIEVQIFGDKHGNVLHL-------------YERDCS-----------VQ 269

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +  Q++   A  A+G       +F+ D  S + +++E+N 
Sbjct: 270 RRHQKIIEEAPAAVGYYNAGTVEFIVDTESDQFYFMEMNT 309


>gi|88855167|ref|ZP_01129832.1| putative acetyl-CoA carboxylase alpha subunit [marine
           actinobacterium PHSC20C1]
 gi|88815695|gb|EAR25552.1| putative acetyl-CoA carboxylase alpha subunit [marine
           actinobacterium PHSC20C1]
          Length = 675

 Score = 81.7 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 84/221 (38%), Gaps = 17/221 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+  +        I +   G+ A  +  DK+ SK+ V+  GV V P I  
Sbjct: 74  AVHPGYGFLSENAQLAEACAAAGITFIGPGVEALEIMGDKIASKKHVTERGVAVIPGIAE 133

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
              T D    +   +  P +IKP  GG   G+ ++++  ++   L      +S+    D 
Sbjct: 134 PGMTNDDLVAAAAEVGFPLLIKPSAGGGGKGMTIVREPDAVAGALDSARRVASAAFGDDT 193

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           L +E+ V+    +   V+ D+   +  +   +        K             +     
Sbjct: 194 LFLERLVEKPRHIEVQVLADSHGTIIHLGERECSLQRRHQKII----EEAPSPLLDEATR 249

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLF-DPLSRKVFWLEINV 264
           + +   A    +++   G    +FL  D    + F++E+N 
Sbjct: 250 QRIGEAACEVARSVSYVGAGTVEFLVSDNAPDEFFFMEMNT 290


>gi|332976369|gb|EGK13221.1| carbamoyl-phosphate synthase, large subunit [Desmospora sp. 8437]
          Length = 1073

 Score = 81.7 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 32/217 (14%), Positives = 85/217 (39%), Gaps = 13/217 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQHLISPPYV 129
           L+   +P   + + A   + D+ + ++++   G+P  P   V      + +   +  P +
Sbjct: 647 LKEHGVPLLGTDLEAIDRAEDRKKFERLLGEVGIPQPPGTAVTSGEAALSAARELGFPVL 706

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           ++P        + ++  +  +   + ++   N    +LI++Y+ G E+    + D    +
Sbjct: 707 VRPSYVLGGRAMEIVYSESELKNYMDEAVKLNPSHPVLIDRYLQGREIEVDAISDGDRVL 766

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
               +   +       +S  +     P  +  +  + +  +     +A+  RG+    F+
Sbjct: 767 IPGIMEHIERAGV---HSGDSIAVYPPPSLTAEQKQRLVNMTTELARALQIRGLINIQFV 823

Query: 250 FDPLSRKVFWLEIN-----VQPGMTPVSIFPEMAAYA 281
                 +++ LE+N       P ++ V+  P MA  A
Sbjct: 824 LH--DEEIYVLEVNPRSSRTVPFLSKVTGIP-MARAA 857



 Score = 79.4 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 50/286 (17%), Positives = 104/286 (36%), Gaps = 33/286 (11%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI---------DVD------------RSVGLV 45
           G ++E + +   G     +L + G +V  +         D D              +  V
Sbjct: 21  GQAAEFDYA---GTQACQSLREEGVEVVLVNSNPATIMTDTDVADKVYIEPMTPEFLTQV 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   +PD     L G  G +  V+     +LE   +    + + A   + D+ + + ++ 
Sbjct: 78  IRKERPDGLLPTLGGQTGLNLAVELAEAGVLEREGVRLLGTDLHAITCAEDREQFRSLMR 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G PV  S +V+     +        P +++P       G  + + +  +   +     
Sbjct: 138 EIGEPVPESEIVHSVEEAVRFAERTGYPVIVRPAYTLGGTGGGIAETEAELRETVENGIH 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   Q LIEQ + G  E+   VM DA+     I V   + +     ++  +        
Sbjct: 198 HSPIGQCLIEQSIAGFKEVEYEVMRDAADHA--IVVCNMENFDPVGVHTGDSIVFAPSQT 255

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +    ++ ++  A    +A+  RG     F  DP S + + +E+N 
Sbjct: 256 LSDREHQMLRNSALKMIRALDIRGGCNVQFALDPDSFQYYVIEVNP 301


>gi|295399674|ref|ZP_06809655.1| pyruvate carboxylase [Geobacillus thermoglucosidasius C56-YS93]
 gi|294978077|gb|EFG53674.1| pyruvate carboxylase [Geobacillus thermoglucosidasius C56-YS93]
          Length = 1147

 Score = 81.7 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 28/222 (12%), Positives = 76/222 (34%), Gaps = 22/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+           I +         +  DK++++      G+PV P    
Sbjct: 82  AIHPGYGFLSENIQFARRCREEGIIFIGPNEEHLDMFGDKVKARHQAKLAGIPVIPGSDG 141

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS-----SSWNHGD 164
            +      +        P +IK   GG   G+ +++    +     ++     +++   D
Sbjct: 142 PVHSLEEVVHFAETYGYPIIIKAALGGGGRGMRIVRSKSEVKEAYERAKSEAKAAFGSDD 201

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLD 222
            + +E+ ++    +   ++GD   ++  +           ++        V P   +  +
Sbjct: 202 -VYVEKLIERPKHIEVQILGDYEGNIIHLYE-----RDCSVQRRHQKVVEVAPSVSLSDE 255

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + + +   A    + +G       +FL        +++E+N 
Sbjct: 256 LRQRICEAAVKLMKNVGYVNAGTVEFLV--SGDDFYFIEVNP 295


>gi|183983823|ref|YP_001852114.1| acetyl-/propionyl-coenzyme A carboxylase alpha chain AccA1
           [Mycobacterium marinum M]
 gi|183177149|gb|ACC42259.1| acetyl-/propionyl-coenzyme A carboxylase alpha chain AccA1
           [Mycobacterium marinum M]
          Length = 669

 Score = 81.7 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 82/222 (36%), Gaps = 19/222 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+    A  +   + +      A  +  DK+ +K  VS+  VPV P I  
Sbjct: 77  AIHPGYGFLSENAEFAAACDRAGVVFLGPPAGAIEVMGDKIAAKNAVSAFDVPVVPGIAR 136

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL-----QSSSWNHGD 164
              + D    +   +  P ++KP  GG   G+ ++++   +   L+      +S++   D
Sbjct: 137 PGLSDDDLIAAADEVGYPVLVKPSAGGGGKGMRMVEEPARLREALVSARREAASAFG-DD 195

Query: 165 QLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            L +E++V     +   V+ D   +V  +   +        K             +    
Sbjct: 196 TLFLERFVLRPRHIEVQVLADTHGNVVHLGERECSLQRRHQK----VIEEAPSPLLDAPT 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFD-PLSRKVFWLEINV 264
              +   A    +++   G    +F+       + F++E+N 
Sbjct: 252 RARIGAAACNTARSVDYVGAGTVEFIVSGDRPDEFFFMEMNT 293


>gi|148645017|gb|ABR01040.1| AccC [uncultured Geobacter sp.]
          Length = 221

 Score = 81.7 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 79/220 (35%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---- 109
            +H  +G   E+     + E   I +      +  +  DK+ ++Q V   GVP+ P    
Sbjct: 7   AIHPGYGFLSENANFAEVCEKCGITFIGPSPESMRIMGDKISARQAVIKQGVPILPGTKE 66

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
            +      +     I  P +IK   GG   G+ ++    ++P     + +         +
Sbjct: 67  GVHTVEDAVKVAKEIGFPVIIKATAGGGGRGMKIVHSQATLPNAFATARAEAQAGFGNPE 126

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+Y +    +   ++ D   +V  +            K      + +       ++ 
Sbjct: 127 VYIEKYCEQPRHVEIQILADKHGNVIHLGERDCSIQRRHQKLLEEAPSTIS----TPELR 182

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +   A  A  A+G   +   +FL D  +   +++E+N 
Sbjct: 183 AAMGDAAVKAAAAVGYNSVGTVEFLVDKHNN-FYFMEMNT 221


>gi|327183879|gb|AEA32326.1| carbamoyl phosphate synthase large subunit [Lactobacillus
           amylovorus GRL 1118]
          Length = 1062

 Score = 81.7 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 43/299 (14%), Positives = 99/299 (33%), Gaps = 42/299 (14%)

Query: 22  CASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNV--LHGNFGEDGLVQ- 69
           C  AL+  G++   I         D   S  L    L  +   NV  L    G   +VQ 
Sbjct: 577 CVKALQKMGYEAIVINSNPETVSTDFSVSDKLYFEPLTLEDVLNVCDLEKPVG--AIVQF 634

Query: 70  ---------AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--M 118
                    A LE   +    + +     + D+    +++ +  +     +        +
Sbjct: 635 GGQTSINLAAGLEKHGVKILGTKVKDVNRAEDRELFDEIIKNLQLNQPKGLTATTHEGVL 694

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           ++   +  P +++P        + ++     +   L           +L++ Y+DG E  
Sbjct: 695 EAADKLGYPVLVRPSYVLGGKAMEIVYNKDELEEYLQDHVDIAADHPILVDDYLDGRECD 754

Query: 179 CGVMGDAS---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLA 234
              + D     L      +  +  +S        +S  V P +    ++ +++  +    
Sbjct: 755 VDAICDGKDVLLPGIMEHIEHAGVHS-------GDSMAVYPPQTFTEEVKEKITDVTRKL 807

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
              + C GI    F+      +V+ +E+N +   T     P ++   G    ++   ++
Sbjct: 808 ALTLHCVGIMNIQFIVR--DGEVYVIEVNPRASRT----VPFLSKITGIEMAQVATRVI 860



 Score = 74.4 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 49/289 (16%), Positives = 97/289 (33%), Gaps = 39/289 (13%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI---------DVD------------RSVGLV 45
           G ++E + S   G     AL + G++V  +         D               S+  +
Sbjct: 21  GQAAEFDYS---GTQACLALREEGYEVVLVNSNPATIMTDTTIADKVYIEPLTVESISRI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +    PD     L G  G +  +      IL+ L I    + + +   + D+ + K++  
Sbjct: 78  IRQEYPDAILPTLGGQVGLNMALALAKTGILDELHIELLGTKLDSIEQAEDREKFKELCK 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G PV PS  VN     +     I  P +++P       G  +    + +         
Sbjct: 138 KLGEPVPPSKTVNTVEDALAFGDEIGYPIIVRPAFTMGGTGGGICHNRKELAEIAKNGLE 197

Query: 160 WNHGDQLLIEQYVDG---IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216
            +   + LIE+ + G   IE       D +  +            +     + +S    P
Sbjct: 198 LSPVTECLIEKSIAGYKEIEFEVMRDHDDNAMIVCCMENFDPVGIH-----TGDSIVFSP 252

Query: 217 AK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           ++ +    Y+ ++  +    +A+   G        DP S     +E+N 
Sbjct: 253 SQTLSDKEYQMLRDCSLRLIRALKIEGGCNVQLALDPTSFNYDVIEVNP 301


>gi|291532667|emb|CBL05780.1| carbamoyl-phosphate synthase large subunit [Megamonas hypermegale
           ART12/1]
          Length = 1073

 Score = 81.7 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 50/286 (17%), Positives = 111/286 (38%), Gaps = 33/286 (11%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI-----------DVD----------RSVGLV 45
           G ++E + +   G     AL++ G +V  +           D+             +  +
Sbjct: 11  GQAAEFDYA---GTQACRALKEEGLEVVLVNSNPATIMTDKDIADRVYIEPLTVEFLDEI 67

Query: 46  LAHLKPDLAFNVLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           LA  +PD     L G  G +  V      +LE   +    + + A   + D+   K+ + 
Sbjct: 68  LAKERPDGLLATLGGQAGLNLAVKLSEAGLLEKYNVELLGTSLEAIERAEDRELFKETMQ 127

Query: 102 SCGVPVCPSILVNR--FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G P+  S +V+     +D  + I  P +++P       G  + + ++ +   +++   
Sbjct: 128 KLGEPIPESTIVDDVASAVDFANQIGYPIIVRPAYTLGGTGGGIAENEEELIEIVIRGLK 187

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
           ++   Q+LIE+ V G  E+   VM D++ +   I V   +       ++  +        
Sbjct: 188 YSMIGQVLIERSVAGWKEVEYEVMRDSNDN--CIVVCNMENLDPVGVHTGDSIVVAPSQT 245

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +    Y+ ++  +    + +G  G   + F  D  S + + +E+N 
Sbjct: 246 LTDHEYQMLRSASLRIIRELGIEGGCNAQFALDTKSNQYYVIEVNP 291



 Score = 54.4 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/241 (14%), Positives = 77/241 (31%), Gaps = 26/241 (10%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ------ 69
           AL   G +   I         D D S  L    L  +   N++     E  +VQ      
Sbjct: 572 ALRKMGIEAIIINNNPETVSTDFDISDRLYFEPLTTEDVLNIIDKEQPEGVIVQFGGQTA 631

Query: 70  ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV--PVCPSILVNRFTMDSQHL 123
               A L+   +    + +     + D+ R  +V+    +  P   S+      + +   
Sbjct: 632 INLAASLKAAGVKVFGTSVDDIDRAEDRERFDEVLEQTNIARPQGASVTNVEDAVKAAEK 691

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + ++  +  +   + ++        +LI+ Y+ G E+    + 
Sbjct: 692 IGYPSMVRPSYVLGGRAMEIVYNEDELRDYMNRAVKVTPDHPVLIDHYMQGTEVEVDAIA 751

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRG 242
           D    V    +   +           +S  V P + +   +   +          +  +G
Sbjct: 752 DGETVVIPGIMEHIERAGVHS----GDSIAVYPPQTLSSKVIFTIIDYTKRLGLNLNVKG 807

Query: 243 I 243
           +
Sbjct: 808 L 808


>gi|86606404|ref|YP_475167.1| carbamoyl phosphate synthase large subunit [Synechococcus sp.
           JA-3-3Ab]
 gi|86554946|gb|ABC99904.1| carbamoyl-phosphate synthase, large subunit [Synechococcus sp.
           JA-3-3Ab]
          Length = 1074

 Score = 81.7 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 57/278 (20%), Positives = 97/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D                V  ++   +PD    
Sbjct: 29  SGTQACKALREEGYEVILVNSNPATIMTDPSMADRVYIEPVTADFVAQIIERERPDALLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  V    + IL+   +    +   A   + D+   KQ +   G+ V  S L
Sbjct: 89  TMGGQTALNVAVELARRGILDQYGVELIGAKREAIEKAEDRELFKQAMQRLGLAVPRSGL 148

Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                   Q  H I  P +I+P       G  V    +            +   Q+L+E+
Sbjct: 149 ARSLAEAKQIAHEIGYPLIIRPAYTLGGTGGGVAYNQEEFEEICAAGLEASPVSQILVEE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            V G  E    VM D + +V  I   ++ D           +S  V PA+ +    Y+ +
Sbjct: 209 SVIGWKEFELEVMRDLADNVVIICSIENIDPMGVHT----GDSITVAPAQTLTDKEYQRL 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  A    + IG   G S   F  +P + +V  +E+N 
Sbjct: 265 RDYAIAIMREIGVETGGSNVQFAVNPANGEVRVIEMNP 302



 Score = 60.1 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 30/191 (15%), Positives = 78/191 (40%), Gaps = 9/191 (4%)

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKG 135
           P   +   +  ++ D+ R  +++   G+      L      +++    I  P V++P   
Sbjct: 657 PIWGAAPDSIDIAEDRGRFGRLLEELGIRQPAHGLARSVEESLEIARRIGYPVVVRPSYV 716

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAV 194
                + ++  DQ +   +  + + +    +L++Q++ D +E+    + D +  VT   +
Sbjct: 717 LGGRAMEIVYSDQDLRRYMQLAVAVDPNRPVLVDQFLEDAVEVDVDAIADHTGAVTIGGI 776

Query: 195 PKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
            +   +  +    S +S  VLP++ +   + + ++       QA+   G+    +     
Sbjct: 777 LE---HIEQAGIHSGDSACVLPSRTLSPAVLQVIRDWTVKLAQALQVVGLINVQYAVQKE 833

Query: 254 SRKVFWLEINV 264
             +V+ LE N 
Sbjct: 834 --QVYVLEANP 842


>gi|49483851|ref|YP_041075.1| biotin carboxylase subunit of acetyl-CoA carboxylase
           [Staphylococcus aureus subsp. aureus MRSA252]
 gi|295428183|ref|ZP_06820815.1| biotin carboxylase subunit [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|49241980|emb|CAG40677.1| putative biotin carboxylase subunit of acetyl-CoA carboxylase
           [Staphylococcus aureus subsp. aureus MRSA252]
 gi|295128541|gb|EFG58175.1| biotin carboxylase subunit [Staphylococcus aureus subsp. aureus
           EMRSA16]
          Length = 453

 Score = 81.7 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 41/220 (18%), Positives = 78/220 (35%), Gaps = 18/220 (8%)

Query: 56  NVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
           N +H  +G   E       +E   I +         +  DK+ ++Q V   GVPV P   
Sbjct: 75  NAIHPGYGFLSESTKFAQTVEEQGIAFIGPTKKTMEMMGDKITARQTVHHAGVPVIPGSN 134

Query: 111 --ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS----WNHGD 164
             +            I  P VIK   GG   GI ++KK + +     ++ S    +   D
Sbjct: 135 DAVNHVSEIEKLAKDIGYPVVIKAASGGGGKGIRIVKKAEDLEKAFKEAKSEGKKYFDDD 194

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           ++ +E ++     +   VMGD   +   +            + +         A +  + 
Sbjct: 195 RVYVEAFIPVAKHVEVQVMGDGQDNYVHLGERDCSV----QRKNQKLIEESPCAALTEER 250

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            +++   A    +A   R     +FL        +++E+N
Sbjct: 251 RQQICNDAVKVARAANYRSAGTIEFLVT--DNAHYFIEMN 288


>gi|312111807|ref|YP_003990123.1| pyruvate carboxylase [Geobacillus sp. Y4.1MC1]
 gi|311216908|gb|ADP75512.1| pyruvate carboxylase [Geobacillus sp. Y4.1MC1]
          Length = 1147

 Score = 81.7 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 28/222 (12%), Positives = 76/222 (34%), Gaps = 22/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+           I +         +  DK++++      G+PV P    
Sbjct: 82  AIHPGYGFLSENIQFARRCREEGIIFIGPNEEHLDMFGDKVKARHQAKLAGIPVIPGSDG 141

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS-----SSWNHGD 164
            +      +        P +IK   GG   G+ +++    +     ++     +++   D
Sbjct: 142 PVHSLEEVVHFAETYGYPIIIKAALGGGGRGMRIVRSKSEVKEAYERAKSEAKAAFGSDD 201

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLD 222
            + +E+ ++    +   ++GD   ++  +           ++        V P   +  +
Sbjct: 202 -VYVEKLIERPKHIEVQILGDYEGNIIHLYE-----RDCSVQRRHQKVVEVAPSVSLSDE 255

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + + +   A    + +G       +FL        +++E+N 
Sbjct: 256 LRQRICEAAVKLMKNVGYVNAGTVEFLV--SGDDFYFIEVNP 295


>gi|213966872|ref|ZP_03395022.1| acetyl-CoA carboxylase, biotin carboxylase [Pseudomonas syringae
           pv. tomato T1]
 gi|301381554|ref|ZP_07229972.1| acetyl-CoA carboxylase biotin carboxylase subunit [Pseudomonas
           syringae pv. tomato Max13]
 gi|302131513|ref|ZP_07257503.1| acetyl-CoA carboxylase biotin carboxylase subunit [Pseudomonas
           syringae pv. tomato NCPPB 1108]
 gi|213928194|gb|EEB61739.1| acetyl-CoA carboxylase, biotin carboxylase [Pseudomonas syringae
           pv. tomato T1]
          Length = 450

 Score = 81.7 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 82/221 (37%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---- 109
            +H  +G   E+      +E   + +         +  DK+ +K+ +   GVP  P    
Sbjct: 77  AIHPGYGFLSENAAFAERIEQAGLTFIGPSAACIRVMGDKVAAKRAMREAGVPCVPGPDT 136

Query: 110 SILVNRFT-MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGD 164
           S+  +  + +     I  P ++K   GG   G+ V+ ++Q +   +     ++       
Sbjct: 137 SMPADPHSILAIARDIGYPVIVKAAGGGGGRGMRVVHEEQQLLDAIALTGEEARRAFGNP 196

Query: 165 QLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           +L IE+++     +   V+ DA  +   +            K             +   +
Sbjct: 197 ELYIEKFLGQPRHVEIQVLCDAYGNAVWLGSRDCSMQRRHQKVL----EEAPAPGVDAAL 252

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              V      A + IG +G+   +FLF   + + +++E+N 
Sbjct: 253 MSRVGERCAQACRQIGYQGVGTFEFLF--ENDEFYFIEMNT 291


>gi|163843454|ref|YP_001627858.1| propionyl-CoA carboxylase, alpha subunit [Brucella suis ATCC 23445]
 gi|163674177|gb|ABY38288.1| Propionyl-CoA carboxylase, alpha subunit [Brucella suis ATCC 23445]
          Length = 667

 Score = 81.7 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 79/220 (35%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      L+   + +    + A     DK+ SK++ +  GV   P  + 
Sbjct: 77  AVHPGYGFLSENPRFAEALKAANVTFIGPPVNAIDAMGDKITSKKLAAEAGVSTVPGHMG 136

Query: 114 NRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQS----IPLDLLQSSSWNHGDQ 165
                D        I  P +IK   GG   G+ +   D+       L   ++ S    D+
Sbjct: 137 LIEDADEAVRIAGSIGYPVMIKASAGGGGKGMRIAWNDEEAREGFQLSRNEAKSSFGDDR 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE++V     +   V+GD   +V  +   +        K             +     
Sbjct: 197 IFIEKFVTQPRHIEIQVLGDQHGNVVYLGERECSIQRRNQK----VIEEAPSPFLDEATR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K +   A    +A+G       +F+ D  +R  ++LE+N 
Sbjct: 253 KAMGEQAVALAKAVGYYSAGTVEFIVDG-NRNFYFLEMNT 291


>gi|254466901|ref|ZP_05080312.1| acetyl-/propionyl-coenzyme A carboxylase alpha chain
           [Rhodobacterales bacterium Y4I]
 gi|206687809|gb|EDZ48291.1| acetyl-/propionyl-coenzyme A carboxylase alpha chain
           [Rhodobacterales bacterium Y4I]
          Length = 645

 Score = 81.7 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 42/226 (18%), Positives = 83/226 (36%), Gaps = 25/226 (11%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H  +G   E+      +E   + +      A      K  +K ++ + GVPV P    
Sbjct: 77  AIHPGYGFLSENPKFVEAVEAAGLVFIGPSADAIRKMGLKDAAKALMEAAGVPVVPGYHG 136

Query: 113 ---VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS-----SSWNHGD 164
                 F       I  P +IK + GG   G+ +++K +     L  +     +++    
Sbjct: 137 ASQDPEFLAGEAGKIGYPVLIKAVAGGGGKGMRLVEKPEEFADALKSAQGEATTAFG-NP 195

Query: 165 QLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            +LIE+Y+     +   V GD +  V              L+          PA  +  +
Sbjct: 196 DVLIEKYIQQPRHIEVQVFGDGTQAV------HLFERDCSLQRRHQKVIEEAPAPGMTEE 249

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR----KVFWLEINV 264
           + + + +    A +AIG +G    +F+ D          +++E+N 
Sbjct: 250 MREAMGQAGVRAAEAIGYKGAGTVEFIVDGSDGLRPDGFWFMEMNT 295


>gi|262278629|ref|ZP_06056414.1| biotin carboxylase [Acinetobacter calcoaceticus RUH2202]
 gi|262258980|gb|EEY77713.1| biotin carboxylase [Acinetobacter calcoaceticus RUH2202]
          Length = 1201

 Score = 81.7 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 42/257 (16%), Positives = 90/257 (35%), Gaps = 32/257 (12%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+     + E   I +             K  ++++     VP+ P  L+
Sbjct: 77  AIHPGYGFLSENAEFCDLCESQGIAFIGPTSSQMLDFGLKHTARELAIKSNVPLLPGSLL 136

Query: 114 NRFTMDS---QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN----HGDQL 166
                ++      I  P ++K   GG  +G+ ++  +  +       S           L
Sbjct: 137 LADEAEALTEAARIGYPVMLKSTAGGGGIGMRLVWNETELKDAYQTVSYLAQVNFKDAGL 196

Query: 167 LIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIY 224
            +E++V     +   + GD    V  +           ++  +       PA  +     
Sbjct: 197 YLEKFVQHARHIEVQIFGDGQGQVLALGE-----RDCSVQRRNQKVIEETPAPHLNEQQC 251

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
             +Q++A    Q++  R     +F+ D  +++ ++LE+N             +    G +
Sbjct: 252 DYLQKVAIQLMQSVNYRSAGTVEFVMDTETQEFYFLEVNT-----------RLQVEHGVT 300

Query: 285 ---FR-ELLLWMVEDAS 297
              F  +L+ WMV  AS
Sbjct: 301 EQVFGVDLVEWMVTLAS 317


>gi|224540871|ref|ZP_03681410.1| hypothetical protein CATMIT_00014 [Catenibacterium mitsuokai DSM
           15897]
 gi|224526206|gb|EEF95311.1| hypothetical protein CATMIT_00014 [Catenibacterium mitsuokai DSM
           15897]
          Length = 453

 Score = 81.7 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 77/220 (35%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---- 109
            +H  FG   E+     ++E   + +            +K ++++++   GVPV P    
Sbjct: 77  AIHPGFGFLSENSDFARLVETCGLKFIGPKGDVIDALGNKSKAREIMIEAGVPVVPGSNG 136

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGDQ 165
           S+       +  + I  P +IK   GG   G+     +  +         ++ +    D 
Sbjct: 137 SVNTYEELKEVVNEIGYPVLIKASAGGGGRGMRKAFSEDELENAFMTAKAEAKACFGDDD 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+ V +   +   ++ D   +V  +            K        V    +   + 
Sbjct: 197 MYVEKLVLNPKHIEFQILADEHGNVIHLGERDCSIQRRNQKMIEEAPCKV----LDASLR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            ++   A  A Q  G       +F+ D  +   +++E+N 
Sbjct: 253 LKMGESAVKAAQGAGYTNAGTVEFVLDEHNN-YYFIEMNT 291


>gi|89069674|ref|ZP_01157011.1| Pyruvate carboxylase [Oceanicola granulosus HTCC2516]
 gi|89044754|gb|EAR50860.1| Pyruvate carboxylase [Oceanicola granulosus HTCC2516]
          Length = 1147

 Score = 81.7 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 33/221 (14%), Positives = 74/221 (33%), Gaps = 18/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+           I +            DK  +++V    GVPV P+  V
Sbjct: 80  AIHPGYGLLSENPDFVDACNEAGIAFIGPRAETMRALGDKASARRVAIEAGVPVIPATEV 139

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ----SSSWNHGDQ 165
               M         I  P ++K   GG   G+  I+    +   + +    + +     +
Sbjct: 140 LGDDMALIRKQADEIGYPLMLKASWGGGGRGMRPIESADELEDKVREGRREAEAAFGNGE 199

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
             +E+ +     +   ++GD   ++  +           ++  +       PA  +    
Sbjct: 200 GYLEKMITRARHVEVQILGDKEGNIYHLWE-----RDCSVQRRNQKVVERAPAPYLSDAQ 254

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +  L     + +        +FL D  S + +++E+N 
Sbjct: 255 RERLCNLGKKICEHVSYECAGTVEFLMDMESGEFYFIEVNP 295


>gi|229631868|sp|A5H0J2|DUR1_SACKL RecName: Full=Urea amidolyase; AltName: Full=Pyrimidine-degrading
           protein 13,15; AltName: Full=Uracil catabolism protein
           3,5; Includes: RecName: Full=Urea carboxylase; Includes:
           RecName: Full=Allophanate hydrolase
 gi|98626707|gb|ABF58890.1| putative urea amidolyase [Lachancea kluyveri]
          Length = 1830

 Score = 81.7 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 27/196 (13%), Positives = 67/196 (34%), Gaps = 12/196 (6%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS---ILVNRFTMDSQHLISPPYVIKP 132
            I +      A      K  ++++    GVP+ P    +   +   +  + +  P ++K 
Sbjct: 723 GIVFVGPSGEAIRKLGLKHSAREIAEKAGVPLVPGSGLVTSAKEAKEIANKLEYPVMVKS 782

Query: 133 LKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQLLIEQYVD-GIELTCGVMGDASL 187
             GG  +G+  +  +  I         Q  ++     + +E++V+    +   +MGD   
Sbjct: 783 TAGGGGIGLQKVDSENEIERVFETVQHQGKAYFGDSGVFLERFVENARHVEIQMMGDGYG 842

Query: 188 DVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
               I            K             +      ++++ A      +  +     +
Sbjct: 843 KAIAIGERDCSLQRRNQKII----EETPAPNLGETTRTKMRQAAESLGSLLKYKCAGTVE 898

Query: 248 FLFDPLSRKVFWLEIN 263
           F++D    + ++LE+N
Sbjct: 899 FIYDERRDEFYFLEVN 914


>gi|158319446|ref|YP_001511953.1| acetyl-CoA carboxylase, biotin carboxylase [Alkaliphilus oremlandii
           OhILAs]
 gi|158139645|gb|ABW17957.1| acetyl-CoA carboxylase, biotin carboxylase [Alkaliphilus oremlandii
           OhILAs]
          Length = 455

 Score = 81.7 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 84/221 (38%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-SIL 112
            +H  +G   E+  +    E   I +            +K  +++ +   GVPV P S  
Sbjct: 77  AIHPGYGFLSENPALVDACESNGIRFIGPYKEHIEKMGNKAEARKTMIEAGVPVVPGSKN 136

Query: 113 VNRFTMDS---QHLISPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSWNHGDQ 165
                +++      I  P ++K   GG   G+ VI           +   +SS+  + D 
Sbjct: 137 ATNEAIEALGIAEEIGFPVMVKAASGGGGRGMRVIHNRDEFINKFNMAKSESSTAFNDDA 196

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           + +E++++    +   ++ D   ++              L+  +       P + I  ++
Sbjct: 197 MYVEKFIEEPRHIEFQILADTFGNII-----HLGERDCSLQRRNQKVLEEAPCQIISEEL 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             ++ ++A  A +A+G       +FL D      +++E+N 
Sbjct: 252 RNKMGQMALRAAKAVGYVNAGTIEFLLDKHHN-FYFIEMNT 291


>gi|227536113|ref|ZP_03966162.1| acetyl-CoA carboxylase [Sphingobacterium spiritivorum ATCC 33300]
 gi|227244010|gb|EEI94025.1| acetyl-CoA carboxylase [Sphingobacterium spiritivorum ATCC 33300]
          Length = 454

 Score = 81.7 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 79/221 (35%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+    AI     I +  +         DK  +K  +    VP  P    
Sbjct: 77  AIHPGYGFLSENARFSAICAEYGIKFIGATAEQIEKMGDKSSAKATMKEADVPTVPGSEG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGD 164
            +   +  +   + I  P +IK   GG   G+ +I KD+             ++++ +  
Sbjct: 137 LLSTFKEGIQLANEIGYPVIIKATAGGGGRGMRIIWKDEDFEAAWDSARQESAAAFGNDG 196

Query: 165 QLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            + +E+YV+    +   V+GD    V  ++           K             I  ++
Sbjct: 197 -IYLEKYVEEPRHIEIQVVGDQYGTVCHLSERDCSIQRRHQKLL----EEAPSPFITPEL 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +   A    +A+   G    +FL D   R  +++E+N 
Sbjct: 252 RQRMGEAAIKGAKAVNYEGAGTIEFLVDKH-RNFYFMEMNT 291


>gi|153009332|ref|YP_001370547.1| carbamoyl-phosphate synthase L chain ATP-binding [Ochrobactrum
           anthropi ATCC 49188]
 gi|151561220|gb|ABS14718.1| Carbamoyl-phosphate synthase L chain ATP-binding [Ochrobactrum
           anthropi ATCC 49188]
          Length = 667

 Score = 81.7 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 46/240 (19%), Positives = 83/240 (34%), Gaps = 16/240 (6%)

Query: 34  SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDK 93
           S I +DR +   +     D      +G   E+      L+   + +    + A     DK
Sbjct: 59  SYIVIDR-ILAAIKETGADAVHPG-YGFLSENPRFAEALKAANVTFIGPPVNAIEAMGDK 116

Query: 94  MRSKQVVSSCGVPVCPSILVNRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQS 149
           + SK++ S  GV   P  +      D        +  P +IK   GG   G+ +   D  
Sbjct: 117 ITSKKLASEAGVSTVPGHMGLIEDADEAVRISTSVGYPVMIKASAGGGGKGMRIAWNDDE 176

Query: 150 ----IPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYEL 204
                 L   ++ S    D++ IE++V     +   V+GD   +V  +   +        
Sbjct: 177 AREGFQLSRNEAKSSFGDDRIFIEKFVTQPRHIEIQVLGDQHGNVVYLGERECSIQRRNQ 236

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K             +     K +   A    +A+G       +F+ D   R  ++LE+N 
Sbjct: 237 K----VIEEAPSPFLDEATRKAMGEQAVALAKAVGYYSAGTVEFIVDGS-RNFYFLEMNT 291


>gi|330880727|gb|EGH14876.1| 3-methylcrotonyl-CoA carboxylase alpha subunit [Pseudomonas
           syringae pv. glycinea str. race 4]
          Length = 467

 Score = 81.7 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 78/221 (35%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      +E   + +      A      K  +K ++   GVP+ P    
Sbjct: 81  AIHPGYGFLSENADFARTIEEAGLIFLGPPASAIDAMGSKSAAKSLMDQAGVPLVPGYHG 140

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
           +   ++    +   I  P ++K   GG   G+ V++    +   L  +           +
Sbjct: 141 DAQDIETFRSAAERIGYPVLLKATAGGGGKGMKVVEHSGELAEALASAQREALSSFGDAR 200

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           +L+E+YV     +   V  D       +            K          PA  +  ++
Sbjct: 201 MLVEKYVLTPRHVEIQVFADRHGHCLYLNERDCSIQRRHQK-----VVEEAPAPGLTPEL 255

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            K +   A  A QAIG  G    +FL D    + F++E+N 
Sbjct: 256 RKAMGEAAVKAAQAIGYMGAGTVEFLLDAR-GEFFFMEMNT 295


>gi|283470883|emb|CAQ50094.1| biotin carboxylase (Acetyl-CoA carboxylase subunit A) (ACC)
           [Staphylococcus aureus subsp. aureus ST398]
          Length = 453

 Score = 81.7 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 41/220 (18%), Positives = 78/220 (35%), Gaps = 18/220 (8%)

Query: 56  NVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
           N +H  +G   E       +E   I +         +  DK+ ++Q V   GVPV P   
Sbjct: 75  NAIHPGYGFLSESTKFAQTVEEQGIAFIGPTKKTMEMMGDKITARQTVHHAGVPVIPGSN 134

Query: 111 --ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS----WNHGD 164
             +            I  P VIK   GG   GI ++KK + +     ++ S    +   D
Sbjct: 135 GAVNHVSEIEKLAKDIGYPVVIKAASGGGGKGIRIVKKAEDLEKAFKEAKSEGKKYFDDD 194

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           ++ +E ++     +   VMGD   +   +            + +         A +  + 
Sbjct: 195 RVYVEAFIPVAKHVEVQVMGDGQDNYVHLGERDCSV----QRKNQKLIEESPCAALTEER 250

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            +++   A    +A   R     +FL        +++E+N
Sbjct: 251 RQQICNDAVKVARAANYRSAGTIEFLVT--DNAHYFIEMN 288


>gi|258616259|ref|ZP_05714029.1| carbamoyl phosphate synthase large subunit [Enterococcus faecium
           DO]
          Length = 513

 Score = 81.7 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 55/296 (18%), Positives = 112/296 (37%), Gaps = 34/296 (11%)

Query: 25  ALEDAGFKVSQID-------VDRSVGLV--------------LAHLKPDLAFNVLHGNFG 63
           AL++ G++V  ++        D+ V                 L   +PD     L G  G
Sbjct: 36  ALKEEGYEVVLVNSNPATIMTDKEVADQVYIEPITLEFVSRILRKERPDALLPTLGGQTG 95

Query: 64  EDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFT 117
            +  ++     ILE L I    + + A   + D+   KQ++     P+  S +VN     
Sbjct: 96  LNMAMELAASGILEELNIELLGTKLSAIDQAEDRDLFKQLMKELNQPIPESEIVNTVEEA 155

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IE 176
           +D  + I  P +++P       G  + + ++ + +      S +   Q LIE+ + G  E
Sbjct: 156 VDFANKIGYPVIVRPAFTLGGTGGGMCENEEELRIVSENGLSLSPATQCLIERSIAGFKE 215

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +   VM D++ +   I V   + +     ++  +        +    Y+ ++  +    +
Sbjct: 216 IEYEVMRDSADNA--IVVCNMENFDPVGIHTGDSIVFAPSQTLSDHEYQMLRDASLSIIR 273

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           A+   G        DP S   + +E+N  P ++  S     +   GY   +L   +
Sbjct: 274 ALKIEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAKI 325


>gi|282906013|ref|ZP_06313868.1| acetyl-CoA biotin carboxylase [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|283958367|ref|ZP_06375818.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Staphylococcus
           aureus subsp. aureus A017934/97]
 gi|297590850|ref|ZP_06949488.1| biotin acetyl-CoA carboxylase subunit A [Staphylococcus aureus
           subsp. aureus MN8]
 gi|282331305|gb|EFB60819.1| acetyl-CoA biotin carboxylase [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|283790516|gb|EFC29333.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Staphylococcus
           aureus subsp. aureus A017934/97]
 gi|297575736|gb|EFH94452.1| biotin acetyl-CoA carboxylase subunit A [Staphylococcus aureus
           subsp. aureus MN8]
 gi|315195506|gb|EFU25893.1| putative biotin carboxylase subunit of acetyl-CoA carboxylase
           [Staphylococcus aureus subsp. aureus CGS00]
          Length = 453

 Score = 81.7 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 41/220 (18%), Positives = 78/220 (35%), Gaps = 18/220 (8%)

Query: 56  NVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
           N +H  +G   E       +E   I +         +  DK+ ++Q V   GVPV P   
Sbjct: 75  NAIHPGYGFLSESTKFAQTVEEQGIAFIGPTKKTMEMMGDKITARQTVHHAGVPVIPGSN 134

Query: 111 --ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS----WNHGD 164
             +            I  P VIK   GG   GI ++KK + +     ++ S    +   D
Sbjct: 135 DAVNHVSEIEKLAKDIGYPVVIKAASGGGGKGIRIVKKAEDLEKAFKEAKSEGKKYFDDD 194

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           ++ +E ++     +   VMGD   +   +            + +         A +  + 
Sbjct: 195 RVYVEAFIPVAKHVEVQVMGDGQDNYVHLGERDCSV----QRKNQKLIEESPCAALTEER 250

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            +++   A    +A   R     +FL        +++E+N
Sbjct: 251 RQQICNDAVKVARAANYRSAGTIEFLVT--DNAHYFIEMN 288


>gi|282904187|ref|ZP_06312075.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Staphylococcus
           aureus subsp. aureus C160]
 gi|282595805|gb|EFC00769.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Staphylococcus
           aureus subsp. aureus C160]
          Length = 453

 Score = 81.7 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 41/220 (18%), Positives = 78/220 (35%), Gaps = 18/220 (8%)

Query: 56  NVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
           N +H  +G   E       +E   I +         +  DK+ ++Q V   GVPV P   
Sbjct: 75  NAIHPGYGFLSESTKFAQTVEEQGIAFIGPTKKTMEMMGDKITARQTVHHAGVPVIPGSN 134

Query: 111 --ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS----WNHGD 164
             +            I  P VIK   GG   GI ++KK + +     ++ S    +   D
Sbjct: 135 DAVNHVSEIEKLAKDIGYPVVIKAASGGGGKGIRIVKKAEDLEKAFKEAKSEGKKYFDDD 194

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           ++ +E ++     +   VMGD   +   +            + +         A +  + 
Sbjct: 195 RVYVEAFIPVAKHVEVQVMGDGQDNYVHLGERDCSV----QRKNQKLIEESPCAALTEER 250

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            +++   A    +A   R     +FL        +++E+N
Sbjct: 251 RQQICNDAVKVARAANYRSAGTIEFLVT--DNAHYFIEMN 288


>gi|332366438|gb|EGJ44189.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus sanguinis
           SK355]
          Length = 455

 Score = 81.7 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 77/220 (35%), Gaps = 16/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  FG   E+     + E + I +         L  DK+ ++  +    VPV P    
Sbjct: 77  AIHPGFGFLSENSKFATMCEEVGIKFIGPSGAVMDLMGDKINARAQMIKAKVPVIPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
            +  +   ++    I  P ++K   GG   GI  ++K + +         ++ +      
Sbjct: 137 EVHTSEEALEVAEKIGYPVMLKASAGGGGKGIRKVEKAEDLVAAFESASSEAKAAFGNGA 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+ +     +   ++ D    V  +            K             I   + 
Sbjct: 197 MYMERVIYPARHIEVQILADQQGHVVHLGERDCSLQRNNQKVL----EESPSVAIGKTLR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +++   A  A Q++G       +FL D    + +++E+N 
Sbjct: 253 QKIGEAAVRAAQSVGYENAGTIEFLLDEAKGEFYFMEMNT 292


>gi|331082328|ref|ZP_08331454.1| acetyl-CoA carboxylase [Lachnospiraceae bacterium 6_1_63FAA]
 gi|330400814|gb|EGG80415.1| acetyl-CoA carboxylase [Lachnospiraceae bacterium 6_1_63FAA]
          Length = 447

 Score = 81.7 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 43/220 (19%), Positives = 79/220 (35%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  FG   E+     + E   + +            +K  +++ +   GVPV P    
Sbjct: 77  AIHPGFGFLSENSRFAQMCEKCHVAFIGPSPEIIQKMGNKSEARKTMMQAGVPVIPGTKE 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
            +      +     I  P +IK   GG   G+ V +K +    + L +   +      D 
Sbjct: 137 AVYTVEEGLSEAERIGFPVMIKASSGGGGKGMRVSEKKEDFTENFLMAQQESKNSFGDDT 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+YV     +   ++GD   +V ++            K             I   I 
Sbjct: 197 MYIERYVRNPRHIEVQILGDKFGNVVQLGERDCSIQRRHQK----LIEESPCCAISEKIR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +++   A  A QA+G       +FL D    + F++E+N 
Sbjct: 253 EKLGETARKAAQAVGYESAGTIEFLLDES-GEFFFMEMNT 291


>gi|325121676|gb|ADY81199.1| UreA amidolyase related protein [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 1201

 Score = 81.7 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 41/257 (15%), Positives = 89/257 (34%), Gaps = 32/257 (12%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+     + E   I +             K  ++++     VP+ P   +
Sbjct: 77  AIHPGYGFLSENAEFCDLCESQGIAFIGPTSSQMLDFGLKHTARELAIKSNVPLLPGSSL 136

Query: 114 NRFTMDS---QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN----HGDQL 166
                ++      I  P ++K   GG  +G+ ++  +  +       S           L
Sbjct: 137 LANEAEALTEAARIGYPVMLKSTAGGGGIGMRLVWNETELKDAYQTVSYLAQVNFKDAGL 196

Query: 167 LIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIY 224
            +E++V     +   + GD    V  +           ++  +       PA  +     
Sbjct: 197 YLEKFVQHARHIEVQIFGDGKGQVLALGE-----RDCSVQRRNQKVIEETPAPHLNEQQR 251

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
             +Q++A    Q++  R     +F+ D  +++ ++LE+N             +    G +
Sbjct: 252 DYLQKVAIQLMQSVNYRSAGTVEFVMDTETQEFYFLEVNT-----------RLQVEHGVT 300

Query: 285 ---FR-ELLLWMVEDAS 297
              F  +L+ WMV  AS
Sbjct: 301 EQVFGVDLVEWMVTLAS 317


>gi|307704279|ref|ZP_07641198.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus mitis
           SK597]
 gi|307622190|gb|EFO01208.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus mitis
           SK597]
          Length = 455

 Score = 81.7 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 80/220 (36%), Gaps = 16/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  FG   E+     + E + I +         +  DK+ ++  +   GVPV P    
Sbjct: 77  AIHPGFGFLSENSKFATMCEEVGIKFIGPSGHVMDMMGDKINARAQMIKAGVPVIPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
            +  +   +     I  P ++K   GG   GI  ++K + +      +SS          
Sbjct: 137 EVHNSEEALIVAEKIGYPVMLKASAGGGGKGIRKVEKPEDLVSAFETASSEAKANYGNGA 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+ +     +   ++GD   +V  +            K             I   + 
Sbjct: 197 MYIERVIYPARHIEVQILGDEHGNVIHLGERDCSLQRNNQKVL----EESPSIAIGKTLR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            E+   A  A +++G       +FLFD  S K +++E+N 
Sbjct: 253 HEIGSAAVRAAESVGYENAGTIEFLFDEASGKFYFMEMNT 292


>gi|242373826|ref|ZP_04819400.1| acetyl-CoA carboxylase biotin carboxylase subunit [Staphylococcus
           epidermidis M23864:W1]
 gi|242348380|gb|EES39982.1| acetyl-CoA carboxylase biotin carboxylase subunit [Staphylococcus
           epidermidis M23864:W1]
          Length = 452

 Score = 81.7 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 35/216 (16%), Positives = 77/216 (35%), Gaps = 15/216 (6%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVN 114
           +G   E+G    + E  ++ +      +      K  +K  +    VPV P     I   
Sbjct: 81  YGFLAENGDFAELCEACQLKFIGPSYQSIQKMGIKDVAKAEMIKANVPVVPGSEGLIQSI 140

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGDQLLIE 169
                    I  P +IK   GG   GI V + ++ +            +++ +G   L E
Sbjct: 141 DDAKKVAKKIGYPVIIKATAGGGGKGIRVARDEKELETGYRMTQQEAETAFGNGGLYL-E 199

Query: 170 QYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           ++++    +   ++GD+  +V  +            +             +  +  +E+ 
Sbjct: 200 KFIENFRHIEIQIIGDSYGNVIHLGERDCTI----QRRMQKLVEEAPSPILSEEKRQEMG 255

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             A  A +A+        +F++D    K +++E+N 
Sbjct: 256 NAAVRAAKAVNYENAGTIEFIYDLDDDKFYFMEMNT 291


>gi|239637664|ref|ZP_04678636.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Staphylococcus
           warneri L37603]
 gi|239596882|gb|EEQ79407.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Staphylococcus
           warneri L37603]
          Length = 452

 Score = 81.7 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 34/216 (15%), Positives = 79/216 (36%), Gaps = 15/216 (6%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS---ILVNR 115
           +G   E+G    + E  ++ +      +      K  +K  +    VPV P    ++ N 
Sbjct: 81  YGFLAENGDFAELCEACQLKFIGPSHESIQKMGIKDVAKAEMIKANVPVVPGSEGLVHNI 140

Query: 116 FTMDS-QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGDQLLIE 169
                    I  P +IK   GG   GI V + ++ +            +++ +G   L E
Sbjct: 141 DDAKKVAKKIGYPVIIKATAGGGGKGIRVARDEKELETGYRMTQQEAETAFGNGGLYL-E 199

Query: 170 QYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           ++++    +   ++GD+  +V  +            +             +  +  +E+ 
Sbjct: 200 KFIENFRHIEIQIIGDSYGNVIHLGERDCTI----QRRMQKLVEEAPSPILSEETRQEMG 255

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             A  A +A+        +F++D    + +++E+N 
Sbjct: 256 NAAIRAAKAVNYENAGTIEFIYDLNDDQFYFMEMNT 291


>gi|52785463|ref|YP_091292.1| pyruvate carboxylase [Bacillus licheniformis ATCC 14580]
 gi|163119415|ref|YP_078880.2| pyruvate carboxylase [Bacillus licheniformis ATCC 14580]
 gi|52347965|gb|AAU40599.1| PycA [Bacillus licheniformis ATCC 14580]
 gi|145902921|gb|AAU23242.2| pyruvate carboxylase [Bacillus licheniformis ATCC 14580]
          Length = 1147

 Score = 81.7 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 31/221 (14%), Positives = 79/221 (35%), Gaps = 20/221 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+       E   I +         +  DK+++++     G+PV P    
Sbjct: 82  AIHPGYGFLSENIQFAKRCEEEGIIFIGPTSEHLDMFGDKVKAREQAEKAGIPVIPGSDG 141

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL----DLLQSSSWNHGDQ 165
            +               P++IK   GG   G+ +++ +  +         ++ +    D+
Sbjct: 142 PVADIAEVKQFAEKFGYPFIIKASLGGGGRGMRIVRDESELVESYNRAKSEAKAAFGNDE 201

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDI 223
           + +E+ ++    +   V+GD   +V  +           ++        V P   +   +
Sbjct: 202 VYVEKLIEKPKHIEVQVIGDKEGNVVHLY-----DRDCSVQRRHQKVIEVAPSVSLSESL 256

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +++   A    + +        +FL    + + F++E+N 
Sbjct: 257 REKICDAAVKLAKNVEYVNAGTVEFLV--ANDEFFFIEVNP 295


>gi|254572936|ref|XP_002493577.1| Urea amidolyase, contains both urea carboxylase and allophanate
           hydrolase activities [Pichia pastoris GS115]
 gi|238033376|emb|CAY71398.1| Urea amidolyase, contains both urea carboxylase and allophanate
           hydrolase activities [Pichia pastoris GS115]
 gi|328354595|emb|CCA40992.1| urea carboxylase [Pichia pastoris CBS 7435]
          Length = 1832

 Score = 81.7 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 31/213 (14%), Positives = 71/213 (33%), Gaps = 12/213 (5%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS---ILVNR 115
           +G   E+      L    I +      A      K  ++++    GVP+ P    +   +
Sbjct: 707 YGFLSENADFSDRLGKEGIVFVGPSGDAIRRLGLKHSAREIAEKAGVPLVPGSGLVTSTK 766

Query: 116 FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQLLIEQY 171
              +    +  P ++K   GG  +G+  +  +  I         Q  S+     + +E++
Sbjct: 767 EAKEIAAKLEYPVMVKSTAGGGGIGLQKVDSEADIERVFETVQHQGKSYFGDSGVFLERF 826

Query: 172 VD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
           V+    +   + GD       +            K             +P     ++++ 
Sbjct: 827 VENARHVEIQMFGDGYGKAIALGERDCSLQRRNQKII----EETPAPNLPEATRLKMRKA 882

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
           A     A+  +     +F++D      ++LE+N
Sbjct: 883 AEQLGSAMNYKCAGTVEFIYDEKRDAFYFLEVN 915


>gi|184157603|ref|YP_001845942.1| biotin carboxylase [Acinetobacter baumannii ACICU]
 gi|332874565|ref|ZP_08442466.1| urea carboxylase [Acinetobacter baumannii 6014059]
 gi|183209197|gb|ACC56595.1| Biotin carboxylase [Acinetobacter baumannii ACICU]
 gi|322507909|gb|ADX03363.1| Allophanate hydrolase subunit 2 [Acinetobacter baumannii 1656-2]
 gi|323517505|gb|ADX91886.1| biotin carboxylase [Acinetobacter baumannii TCDC-AB0715]
 gi|332737203|gb|EGJ68129.1| urea carboxylase [Acinetobacter baumannii 6014059]
          Length = 1201

 Score = 81.7 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 41/257 (15%), Positives = 89/257 (34%), Gaps = 32/257 (12%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+     + E   I +             K  ++++     VP+ P   +
Sbjct: 77  AIHPGYGFLSENAEFCDLCESQGIAFIGPTSSQMLDFGLKHTARELAIKSNVPLLPGSSL 136

Query: 114 NRFTMDS---QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN----HGDQL 166
                ++      I  P ++K   GG  +G+ ++  +  +       S           L
Sbjct: 137 LSDEAEALTEAARIGYPVMLKSTAGGGGIGMRLVWNETELKDAYQTVSYLAQVNFKDAGL 196

Query: 167 LIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIY 224
            +E++V     +   + GD    V  +           ++  +       PA  +     
Sbjct: 197 YLEKFVQHARHIEVQIFGDGKGQVLALGE-----RDCSVQRRNQKVIEETPAPHLNEQQR 251

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
             +Q++A    Q++  R     +F+ D  +++ ++LE+N             +    G +
Sbjct: 252 DYLQKVAIQLMQSVNYRSAGTVEFVMDTETQEFYFLEVNT-----------RLQVEHGVT 300

Query: 285 ---FR-ELLLWMVEDAS 297
              F  +L+ WMV  AS
Sbjct: 301 EQVFGVDLVEWMVTLAS 317


>gi|302061690|ref|ZP_07253231.1| acetyl-CoA carboxylase biotin carboxylase subunit [Pseudomonas
           syringae pv. tomato K40]
          Length = 450

 Score = 81.7 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 82/221 (37%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---- 109
            +H  +G   E+      +E   + +         +  DK+ +K+ +   GVP  P    
Sbjct: 77  AIHPGYGFLSENAAFAERIEQAGLTFIGPSAACIRVMGDKVAAKRAMREAGVPCVPGPDT 136

Query: 110 SILVNRFT-MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGD 164
           S+  +  + +     I  P ++K   GG   G+ V+ ++Q +   +     ++       
Sbjct: 137 SMPADPHSILAIARDIGYPVIVKAAGGGGGRGMRVVHEEQQLLDAIALTGEEARRAFGNP 196

Query: 165 QLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           +L IE+++     +   V+ DA  +   +            K             +   +
Sbjct: 197 ELYIEKFLGQPRHVEIQVLCDAYGNAVWLGSRDCSMQRRHQKVL----EEAPAPGVDAAL 252

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              V      A + IG +G+   +FLF   + + +++E+N 
Sbjct: 253 MSRVGERCAQACRQIGYQGVGTFEFLF--ENDEFYFIEMNT 291


>gi|172038188|ref|YP_001804689.1| acetyl-CoA carboxylase biotin carboxylase subunit [Cyanothece sp.
           ATCC 51142]
 gi|171699642|gb|ACB52623.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Cyanothece sp.
           ATCC 51142]
          Length = 451

 Score = 81.7 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 79/220 (35%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---S 110
            +H  +G   E+     I    +I +      A     DK  +K+ +   GVP  P    
Sbjct: 79  AIHPGYGFLAENARFAEICADHQIVFIGPSPEAIRAMGDKSTAKKTMQKAGVPTVPGSAG 138

Query: 111 ILVNRFT-MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS----IPLDLLQSSSWNHGDQ 165
           +L N    +     +  P +IK   GG   G+ +++++            ++ +      
Sbjct: 139 LLDNEEEALKVARDVGYPVMIKATAGGGGRGMRLVREESEFSRLFQAAQGEAEAAFANAG 198

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E++++    +   ++ D+  +V  +            K             +   + 
Sbjct: 199 VYLEKFIERPRHIEFQILADSYGNVIHLGERDCSIQRRHQKLL----EEAPSPFLTPQLR 254

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K++   A  A ++I   G    +FL D      +++E+N 
Sbjct: 255 KKMGEAAVKAAKSINYVGAGTVEFLVDNQGN-FYFMEMNT 293


>gi|302532420|ref|ZP_07284762.1| phosphoribosylglycinamide formyltransferase 2 [Streptomyces sp. C]
 gi|302441315|gb|EFL13131.1| phosphoribosylglycinamide formyltransferase 2 [Streptomyces sp. C]
          Length = 434

 Score = 81.7 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 49/225 (21%), Positives = 94/225 (41%), Gaps = 16/225 (7%)

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS--PPYVI 130
           E + +P+T     A+  +  K R +QV+++ GV      +V  F   +        P V+
Sbjct: 116 EEIGVPFT--DAAAAETAKQKDRCRQVLAAAGVDTTRYAVVGGFEEAAAFAAGGGYPVVV 173

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190
           KP +G  S G  V+  ++ +   L  +    +   +L+E+Y+ G  ++  + G       
Sbjct: 174 KPARGSGSEGAHVVADEEQLAGVLAGAPDGAYAAGILVEEYLSGRFVSAEI-GLVHGRFL 232

Query: 191 EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR-GISRSDFL 249
            +AV +   +    ++ +L +   +PA I  + +  V R A     A+G R G+   + +
Sbjct: 233 RLAVSERSTW---HRHEALETGTTIPAGISAEEHDRVMRFAEEVVGAVGLRLGVFHVEVM 289

Query: 250 FDPLSRKVFWLEINV-QPGMTPVSIFPEMAAYA-GYSFRELLLWM 292
                     +E+N    G    S  P +   A G    ELL+ +
Sbjct: 290 L-GADGTPRLIELNPRIMG----SCLPNLFRLAGGGDIFELLVRI 329


>gi|223043725|ref|ZP_03613768.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus capitis
           SK14]
 gi|222442822|gb|EEE48924.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus capitis
           SK14]
          Length = 1057

 Score = 81.7 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 53/315 (16%), Positives = 119/315 (37%), Gaps = 39/315 (12%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQID---------------------VDRSVGLV 45
           G ++E + +   G     AL++ G++V  ++                         +  +
Sbjct: 21  GQAAEFDYA---GTQACLALKEEGYRVILVNSNPATIMTDKEIADKVYIEPLTHDFIARI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   +PD     L G  G +  +Q     +L    +    + + +   + D+   + +++
Sbjct: 78  IRKEQPDALLPTLGGQTGLNMAIQLHDSGVLAANNVKLLGTELESIQQAEDREMFRTLMN 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
              VPV  S +VN      + +  +  P +++P       G  +   D  +   +     
Sbjct: 138 DLNVPVPESDIVNTVEQAFEFKEQVGYPLIVRPAFTMGGTGGGICYNDDDLKEVVSNGLH 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
           ++   Q LIE+ + G  E+   VM D + +   I V   +     +   + +S  V P++
Sbjct: 198 YSPATQCLIEKSIAGYKEIEYEVMRDKNDNA--IVVCNMENID-PVGIHTGDSIVVAPSQ 254

Query: 219 -IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
            +    Y+ ++ ++    +A+G  G        DP S   + +E+N  P ++  S     
Sbjct: 255 TLSDVEYQMLRDVSLKVIRALGIEGGCNVQLALDPHSLNYYIIEVN--PRVSRSS--ALA 310

Query: 278 AAYAGYSFRELLLWM 292
           +   GY   +L   +
Sbjct: 311 SKATGYPIAKLAAKI 325



 Score = 67.5 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 24/192 (12%), Positives = 68/192 (35%), Gaps = 9/192 (4%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVC--PSILVNRFTMDSQHLISPPYVIKPL 133
            +    + +     + D+   + ++    VP     +    +  +++   I  P V++P 
Sbjct: 650 GVQIMGTSLEDLNRAEDRKEFEALLRQIEVPQPQGKTSTSPKEALENAREIGYPVVVRPS 709

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
                  + ++  DQ +   + Q+   +    +L+++Y+ G E+    + D    +    
Sbjct: 710 YVLGGRAMEIVDNDQELENYMTQAVKASPEHPVLVDRYLTGKEIEVDAICDGDTVIIPGI 769

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
           +   +           +S  V P + +  +    ++       + +   G+    F+   
Sbjct: 770 MEHIERAGVHS----GDSIAVYPPQTLTKEEIDTLEDYTIKLAKGLNIIGLINIQFVIAH 825

Query: 253 LSRKVFWLEINV 264
               V+ LE+N 
Sbjct: 826 DG--VYVLEVNP 835


>gi|120437015|ref|YP_862701.1| pyruvate carboxylase [Gramella forsetii KT0803]
 gi|117579165|emb|CAL67634.1| pyruvate carboxylase [Gramella forsetii KT0803]
          Length = 1149

 Score = 81.7 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 38/248 (15%), Positives = 91/248 (36%), Gaps = 27/248 (10%)

Query: 38  VDRSVGLVLAHLKPDLAFNV--------LHGNFG---EDGLVQAILELLEIPYTHSGILA 86
           +      +  +L  D   NV        +H  +G   E+       +   I +    +  
Sbjct: 52  IGDDNEPLKPYLNIDAIINVAKNNNVDAIHPGYGFLSENAEFARKCKENNIIFVGPDVEV 111

Query: 87  SALSMDKMRSKQVVSSCGVPVC----PSILVNRFTMDSQHLISPPYVIKPLKGGSSLGII 142
                DK+ +K+V     VP+     P++      +   + I  P ++K   GG   G+ 
Sbjct: 112 LKSLGDKVTAKKVAKENNVPIIESNEPALETLDIALSEANRIGFPLMLKAASGGGGRGMR 171

Query: 143 VIKKDQSIPLDLLQSSSWNH----GDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKS 197
           VI+ ++ +     +S          D + IE++++    +   ++ D+  ++        
Sbjct: 172 VIRDEEGLKKSFSESKREALNAFGDDTVFIEKFIENPKHIEIQIVADSHGNMV-----HL 226

Query: 198 DFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256
                 ++          P+  +  +I +++ + A    +A+    I   +FL D     
Sbjct: 227 FERDCSVQRRYQKVIEFAPSYGLSTEIKEKLYQYALDICKAVDYNNIGTVEFLVDE-DGS 285

Query: 257 VFWLEINV 264
           ++++E+N 
Sbjct: 286 IYFIEVNP 293


>gi|297736021|emb|CBI24059.3| unnamed protein product [Vitis vinifera]
          Length = 587

 Score = 81.7 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 79/220 (35%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
           +LH  +G   E+     +     I +      +  +  DK  ++  + + GVP  P    
Sbjct: 204 MLHPGYGFLAENATFVEMCREHGINFIGPNPDSIRVMGDKSTARDTMKNAGVPTVPGSEG 263

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS----IPLDLLQSSSWNHGDQ 165
            +      +   + I  P +IK   GG   G+ + K+       +     ++++    D 
Sbjct: 264 LLKSTEEGIKLANEIGYPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDG 323

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+Y+ +   +   V+ D   +V               K             +  ++ 
Sbjct: 324 VYLEKYIQNPRHIEFQVLADKFGNVVHFGERDCSIQRRNQKLL----EEAPSPALTSELR 379

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K +   A  A  +IG  G+   +FL D      +++E+N 
Sbjct: 380 KAMGDAAVAAAASIGYIGVGTVEFLLDER-GSFYFMEMNT 418


>gi|311029786|ref|ZP_07707876.1| pyruvate carboxylase [Bacillus sp. m3-13]
          Length = 1147

 Score = 81.3 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 33/243 (13%), Positives = 81/243 (33%), Gaps = 21/243 (8%)

Query: 35  QIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSM 91
            ID    +  ++   K +   + +H  +G   E+       E   I +         +  
Sbjct: 60  PIDAYLDIDGIIEIAKANDV-DAIHPGYGFLSENIHFARKCEEEGIIFIGPTSKHLDMFG 118

Query: 92  DKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147
           DK++++       +PV P     +      MD       P +IK   GG   G+ +++  
Sbjct: 119 DKVKARTQAQLANIPVIPGTDGPVHSLDEVMDFAATYGYPLMIKAALGGGGRGMRIVRSK 178

Query: 148 QSIPL----DLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSY 202
             +         ++ +    D + +E+ ++    +   ++GD   ++  +          
Sbjct: 179 SELRESFDRAKSEAKAAFGNDDVYVEKLIENPKHIEVQILGDQHGEIIHLFERDCSIQRR 238

Query: 203 ELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
             K        + P   +  D+   +   A    + +        +FL      + +++E
Sbjct: 239 HQK-----VVEIAPSVSLTDDLRDRICNAAVELMENVDYINAGTVEFLV--AGDEFYFIE 291

Query: 262 INV 264
           +N 
Sbjct: 292 VNP 294


>gi|255715439|ref|XP_002554001.1| KLTH0E12078p [Lachancea thermotolerans]
 gi|238935383|emb|CAR23564.1| KLTH0E12078p [Lachancea thermotolerans]
          Length = 1829

 Score = 81.3 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 29/213 (13%), Positives = 71/213 (33%), Gaps = 12/213 (5%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS---ILVNR 115
           +G   E+           I +      A      K  ++++    GVP+ P    +   +
Sbjct: 706 YGFLSENADFSDRCAAEGINFVGPTGDAIRKLGLKHSAREIAEEAGVPLVPGSDLVKTPQ 765

Query: 116 FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQLLIEQY 171
              +    +  P ++K   GG  +G+  +  ++ I         Q  ++     + +E++
Sbjct: 766 EAREIAKKLEYPVMVKSTAGGGGIGLQKVDSEEDIERVFETVQHQGLAYFGDSGVFLERF 825

Query: 172 VD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
           V+    +   +MGD +     I            K             +       +++ 
Sbjct: 826 VENARHVEIQLMGDGNGKAIAIGERDCSLQRRNQK----VIEETPAPNLSEKTRMRMRKA 881

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
           +      +  R     +F++D    + ++LE+N
Sbjct: 882 SESLGSLLNYRCAGTVEFIYDEKRDEFYFLEVN 914


>gi|282911243|ref|ZP_06319045.1| acetyl-CoA carboxylase, biotin carboxylase [Staphylococcus aureus
           subsp. aureus WBG10049]
 gi|282324938|gb|EFB55248.1| acetyl-CoA carboxylase, biotin carboxylase [Staphylococcus aureus
           subsp. aureus WBG10049]
 gi|312437926|gb|ADQ76997.1| acetyl-CoA carboxylase, biotin carboxylase [Staphylococcus aureus
           subsp. aureus TCH60]
          Length = 453

 Score = 81.3 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 41/220 (18%), Positives = 78/220 (35%), Gaps = 18/220 (8%)

Query: 56  NVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
           N +H  +G   E       +E   I +         +  DK+ ++Q V   GVPV P   
Sbjct: 75  NAIHPGYGFLSESTKFAQTVEEQGIAFIGPTKKTMEMMGDKITARQTVHHAGVPVIPGSN 134

Query: 111 --ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS----WNHGD 164
             +            I  P VIK   GG   GI ++KK + +     ++ S    +   D
Sbjct: 135 DAVNHVSEIEKLAKDIGYPVVIKAASGGGGKGIRIVKKAEDLEKAFKEAKSEGKKYFDDD 194

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           ++ +E ++     +   VMGD   +   +            + +         A +  + 
Sbjct: 195 RVYVEAFIPVAKHVEVQVMGDGQDNYVHLGERDCSV----QRKNQKLIEESPCAALTEER 250

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            +++   A    +A   R     +FL        +++E+N
Sbjct: 251 RQQICNDAVKVARAANYRSAGTIEFLVT--DNAHYFIEMN 288


>gi|118497163|ref|YP_898213.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Francisella
           tularensis subsp. novicida U112]
 gi|194323461|ref|ZP_03057238.1| acetyl-CoA carboxylase, biotin carboxylase [Francisella tularensis
           subsp. novicida FTE]
 gi|254372530|ref|ZP_04988019.1| acetyl-CoA carboxylase [Francisella tularensis subsp. novicida
           GA99-3549]
 gi|118423069|gb|ABK89459.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Francisella
           novicida U112]
 gi|151570257|gb|EDN35911.1| acetyl-CoA carboxylase [Francisella novicida GA99-3549]
 gi|194322316|gb|EDX19797.1| acetyl-CoA carboxylase, biotin carboxylase [Francisella tularensis
           subsp. novicida FTE]
 gi|328675688|gb|AEB28363.1| Biotin carboxylase of acetyl-CoA carboxylase [Francisella cf.
           novicida 3523]
          Length = 451

 Score = 81.3 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 34/222 (15%), Positives = 80/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +      +  +  DK+ + + +   GVP  P    
Sbjct: 77  AIHPGYGFLSENAKFAKAVEESGFIFIGPRAESIEIMGDKVEAIKYMKKAGVPCVPGSGG 136

Query: 112 ---LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GD 164
                 +  ++    I  P +IK   GG   G+ +++K + +   +  + S        D
Sbjct: 137 PLGSDEKKNLEIADKIGYPVIIKAAGGGGGRGMSIVRKKEDLISAISLTKSEARIAFNND 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLD 222
            + +E++++    +   V GD   +   +            +          PA  +  +
Sbjct: 197 MVYMEKFLENPRHIEIQVFGDGEGNAVYL-----FERDCSTQRRHQKVIEEAPAIGLSDE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             K +      A + +  RG    +FL+   + + +++E+N 
Sbjct: 252 ERKRIGEQCVSACKILKYRGAGTFEFLY--ENGEFYFIEMNT 291


>gi|327467144|gb|EGF12654.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus sanguinis
           SK330]
          Length = 455

 Score = 81.3 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 77/220 (35%), Gaps = 16/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  FG   E+     + E + I +         L  DK+ ++  +    VPV P    
Sbjct: 77  AIHPGFGFLSENSKFATMCEEVGIKFIGPSGAVMDLMGDKINARAQMIKAKVPVIPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
            +  +   ++    I  P ++K   GG   GI  ++K + +         ++ +      
Sbjct: 137 EVHTSEEALEVAEKIGYPVMLKASAGGGGKGIRKVEKAEDLVAAFESASSEAKAAFGNGA 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+ +     +   ++ D    V  +            K             I   + 
Sbjct: 197 MYMERVIYPARHIEVQILADQQGHVVHLGERDCSLQRNNQKVL----EESPSVAIGKTLR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +++   A  A Q++G       +FL D    + +++E+N 
Sbjct: 253 QQIGEAAVRAAQSVGYENAGTIEFLLDEAKGEFYFMEMNT 292


>gi|195113267|ref|XP_002001189.1| GI10647 [Drosophila mojavensis]
 gi|193917783|gb|EDW16650.1| GI10647 [Drosophila mojavensis]
          Length = 695

 Score = 81.3 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 80/222 (36%), Gaps = 20/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E      + +   + +      A      K  SK ++++ GVP+      
Sbjct: 99  AIHPGYGFLSESVEFAELCQKEGVIFMGPPSSAIRDMGIKSTSKAIMAAAGVPIINGYHG 158

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS-----SWNHGD 164
           +  +          I  P +IK ++GG   G+ + +K +     L  +      ++    
Sbjct: 159 DDQSDACLQVEAAKIGFPLMIKAVRGGGGKGMRIAEKPEDFLTALNSARTESLKAFG-DS 217

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            +L+E+YV     +   V  D   D   +           ++          PA  +  +
Sbjct: 218 SVLLERYVRSPRHVEVQVFADQYGDAVYLWE-----RDCSVQRRHQKIIEEAPAPGLSEE 272

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +E+   A  A +A+G  G    +F+ D       ++E+N 
Sbjct: 273 LRRELGEAAVRAAKAVGYVGAGTVEFILDKEDLSFHFMEMNT 314


>gi|225351127|ref|ZP_03742150.1| hypothetical protein BIFPSEUDO_02714 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225158583|gb|EEG71825.1| hypothetical protein BIFPSEUDO_02714 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 636

 Score = 81.3 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 41/232 (17%), Positives = 89/232 (38%), Gaps = 17/232 (7%)

Query: 42  VGLVLAHLKPDLAFNVLHGNFGEDGLV-QAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           +  +L     D      +G   E     Q +++ +   +      A     DK+ +++V 
Sbjct: 69  LIDILQRSGADAVHPG-YGFLSEVATFAQKVID-VGAAWVGPNPKALVDLGDKITARRVA 126

Query: 101 SSCGVPVCP----SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
           +   VP  P    SI   R  +D  H    P ++K   GG   GI ++  D  +    + 
Sbjct: 127 TFAKVPPVPGISQSISDMRLLLDFAHTHGYPLMLKRTDGGGGRGITLVHNDDELRGFYMN 186

Query: 157 SSSWNHGD--QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTH 213
             +   GD  +  +E+++D G  +      D+  + T  +          ++  +     
Sbjct: 187 HDALQGGDLNEYFVERFIDKGRHVETQCGRDSHGNFTVYST-----RDCSVQRRNQKLVE 241

Query: 214 VLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             PA  +  ++  +++  +    +A+   G+   +F+      KV++LE+N 
Sbjct: 242 EAPAPFLSSEVTDQLETYSRRLFEAVDYEGLGTCEFMVTEQ-GKVYFLEVNP 292


>gi|153813957|ref|ZP_01966625.1| hypothetical protein RUMTOR_00164 [Ruminococcus torques ATCC 27756]
 gi|317501485|ref|ZP_07959683.1| carbamoylphosphate synthase large subunit [Lachnospiraceae
           bacterium 8_1_57FAA]
 gi|331088043|ref|ZP_08336964.1| carbamoyl-phosphate synthase [Lachnospiraceae bacterium 3_1_46FAA]
 gi|145848353|gb|EDK25271.1| hypothetical protein RUMTOR_00164 [Ruminococcus torques ATCC 27756]
 gi|316897114|gb|EFV19187.1| carbamoylphosphate synthase large subunit [Lachnospiraceae
           bacterium 8_1_57FAA]
 gi|330408999|gb|EGG88458.1| carbamoyl-phosphate synthase [Lachnospiraceae bacterium 3_1_46FAA]
          Length = 1059

 Score = 81.3 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 53/313 (16%), Positives = 116/313 (37%), Gaps = 42/313 (13%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNV 57
           G   E + S  +  A    + +AG++   I         D   S  L    L  +   NV
Sbjct: 562 GQGVEFDYS--TVHAV-KTIRNAGYEAIVINNNPETVSTDYTTSDKLYFEPLCVEDVMNV 618

Query: 58  LHGNFGEDGLVQAI-----------LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP 106
           +      DG++ ++           LE   +    +   A   + ++   ++++++  +P
Sbjct: 619 IE-LERPDGVIASLGGQTAVNLAEPLESRGVTIIGTDCEAIEKAENRESFEKLLAALSIP 677

Query: 107 VCPSILVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164
                 V      + +   I  P +++P        + ++ K++ +   L  +   N   
Sbjct: 678 QPKGQAVTNIEDGVKAAAAIGYPVLVRPSFVLGGRAMQIVAKEEQLRQYLKTAVEINEEK 737

Query: 165 QLLIEQYVDGIELTC-GVMGDASLDVTEIA--VPKSDFYSYELKYSSLNSTHVLPAK-IP 220
            +L++ Y+ G E+   G+     + V  I   V ++  +S        +S  V P+  I 
Sbjct: 738 PVLVDHYIRGKEVEIDGICDGQDVFVPGIMELVERTGVHS-------GDSISVYPSYSIS 790

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280
             + + +          IG RG+    F+ D     V+ +E+N +   T     P ++  
Sbjct: 791 DHVKEVILDYTRRLGLGIGIRGLFNIQFIVDQEEN-VYIIEVNPRSSRT----VPFLSKA 845

Query: 281 AGYSFRELLLWMV 293
            GYS  ++   ++
Sbjct: 846 TGYSLADIATRVI 858



 Score = 70.5 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 51/269 (18%), Positives = 107/269 (39%), Gaps = 32/269 (11%)

Query: 25  ALEDAGFKVSQ-------IDVDRSVGL--------------VLAHLKPDLAFNVLHGNFG 63
           AL++ G++V         I  D ++                ++ H +PD     + G  G
Sbjct: 36  ALKEEGYEVILCNSNPATIMTDPAIADKVYMEPLTLEYMAKIVRHERPDAIVPGIGGQTG 95

Query: 64  EDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFT 117
            +  +Q     +L+  +     +G  +   + D+   K++    G PV PS++ N     
Sbjct: 96  LNLAMQLEKKGVLKECQTELLGTGSESIRQAEDRELFKELCEKLGEPVLPSLVANTAEEA 155

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IE 176
           + +   I  P V++P       G      +Q     +  + + +   Q+L+E+ + G  E
Sbjct: 156 LQAAKTIGYPVVLRPAFTLGGTGGGFADDEQEFLGLIHNALALSPVHQVLVEKSIKGFKE 215

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAH 235
           +   V+ D++   T I V   +     +   + +S  V P++ +    Y+ ++  A    
Sbjct: 216 IEYEVIRDSND--TAITVCNMENLD-PVGIHTGDSIVVCPSQTLTNKEYQMLRDSALRLI 272

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +A+   G     F  DP S + + +E+N 
Sbjct: 273 RALRVEGGCNVQFALDPHSFRYYVIEVNP 301


>gi|331695454|ref|YP_004331693.1| methylcrotonoyl-CoA carboxylase [Pseudonocardia dioxanivorans
           CB1190]
 gi|326950143|gb|AEA23840.1| Methylcrotonoyl-CoA carboxylase [Pseudonocardia dioxanivorans
           CB1190]
          Length = 664

 Score = 81.3 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 46/213 (21%), Positives = 82/213 (38%), Gaps = 12/213 (5%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
           +G   E+           + +      A A    K+ +K ++ + GVPV P   V   T 
Sbjct: 87  YGFLSENAGFARDCAAAGLTFVGPTPEAIASMGSKLEAKALMEAAGVPVLPGATVTDETD 146

Query: 119 --DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGDQLLIEQY 171
                  I  P ++K   GG   G+ ++    S+   +       +S++  G   L    
Sbjct: 147 LSVEADRIGFPVLVKAAFGGGGRGMRIVHDADSLREAVDGARREAASAFGDGTVFLERYV 206

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           VD   +   ++GD   DV  +   +    S + +Y  +      PA +   +  E+   A
Sbjct: 207 VDPRHVEVQILGDTHGDVVHLFERE---CSIQRRYQKIVEESPSPA-VDDALRAELGAAA 262

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             A +AIG  G    +F+ D    + F+LE+N 
Sbjct: 263 VAAGKAIGYTGAGTVEFVLD-QDGRFFFLEVNT 294


>gi|125718724|ref|YP_001035857.1| acetyl-CoA carboxylase biotin carboxylase subunit [Streptococcus
           sanguinis SK36]
 gi|125498641|gb|ABN45307.1| Biotin carboxylase, putative [Streptococcus sanguinis SK36]
 gi|324993602|gb|EGC25522.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus sanguinis
           SK405]
 gi|327462374|gb|EGF08699.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus sanguinis
           SK1057]
          Length = 455

 Score = 81.3 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 77/220 (35%), Gaps = 16/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  FG   E+     + E + I +         L  DK+ ++  +    VPV P    
Sbjct: 77  AIHPGFGFLSENSKFATMCEEVGIKFIGPSGAVMDLMGDKINARAQMIKAKVPVIPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
            +  +   ++    I  P ++K   GG   GI  ++K + +         ++ +      
Sbjct: 137 EVHTSEEALEVAEKIGYPVMLKASAGGGGKGIRKVEKAEDLVAAFESASSEAKAAFGNGA 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+ +     +   ++ D    V  +            K             I   + 
Sbjct: 197 MYMERVIYPARHIEVQILADQQGHVVHLGERDCSLQRNNQKVL----EESPSVAIGKTLR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +++   A  A Q++G       +FL D    + +++E+N 
Sbjct: 253 QQIGEAAVRAAQSVGYENAGTIEFLLDEAKGEFYFMEMNT 292


>gi|109947094|ref|YP_664322.1| biotin carboxylase [Helicobacter acinonychis str. Sheeba]
 gi|109714315|emb|CAJ99323.1| accC [Helicobacter acinonychis str. Sheeba]
          Length = 455

 Score = 81.3 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 38/225 (16%), Positives = 78/225 (34%), Gaps = 14/225 (6%)

Query: 49  LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
            + D  F   +G   E+     I     + +        AL  DK ++K V+   G+PV 
Sbjct: 84  FEADAIFPG-YGFLSENQNFVEICSHHSLEFIGPSAKVMALMSDKSKAKSVMKEAGMPVI 142

Query: 109 PS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSW 160
                 +   +   +    I  P +IK   GG   G+ V++    +         ++ S 
Sbjct: 143 EGSDGLLKSYQEAEEIADKIGYPVIIKAAAGGGGRGMRVVEDKSKLKNLYLAAETEALSA 202

Query: 161 NHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI 219
                + +E+++     +   ++ D   +V  +          + K             +
Sbjct: 203 FGDGSVYLEKFINKPKHIEVQILADKHGNVIHVGERDCSVQRRQQKLI----EETPAVVL 258

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              + K +   A  A + IG  G    +FL D   +  +++E+N 
Sbjct: 259 EESVRKRLLETAIKATKHIGYVGAGTFEFLLDSNMKDFYFMEMNT 303


>gi|254477797|ref|ZP_05091183.1| methylcrotonoyl-CoA carboxylase subunit alpha [Ruegeria sp. R11]
 gi|214032040|gb|EEB72875.1| methylcrotonoyl-CoA carboxylase subunit alpha [Ruegeria sp. R11]
          Length = 649

 Score = 81.3 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 40/226 (17%), Positives = 80/226 (35%), Gaps = 25/226 (11%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      +E   + +      A      K  +K ++   GVPV P    
Sbjct: 78  AIHPGYGFLSENPDFVDAVEAAGLTFIGPSADAIRKMGLKDAAKVLMEEAGVPVVPGYHG 137

Query: 114 NRFT----MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS-----SSWNHGD 164
                    +    I  P +IK + GG   G+ +++        L  +     +++    
Sbjct: 138 TNQDAGFLQEQADQIGYPVLIKAVAGGGGKGMRLVEAAGDFAEALKSAQGEATTAFG-NP 196

Query: 165 QLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            +LIE+Y+     +   V GD +  V              L+          PA  +  +
Sbjct: 197 DVLIEKYIQQPRHIEVQVFGDGTHAV------HLFERDCSLQRRHQKVIEEAPAPGMTPE 250

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR----KVFWLEINV 264
           + + + +    A +AIG +G    +F+ D          +++E+N 
Sbjct: 251 MREAMGQAGVRAAEAIGYKGAGTVEFIVDGSDGLRTDGFWFMEMNT 296


>gi|156900688|gb|ABU96747.1| pyruvate carboxylase [Rhizobium sp. TAL1145]
          Length = 1153

 Score = 81.3 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 81/221 (36%), Gaps = 18/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E        +   I +            +K+ ++ +  S GVPV P+   
Sbjct: 85  AIHPGYGLLSESPEFVDACDAAGIIFIGPKADTMRQLGNKVAARNLAISVGVPVVPATEP 144

Query: 114 NRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
               M+        I  P ++K   GG   G+ VI+ +  +  ++ ++          D+
Sbjct: 145 LPDDMNGSAKMAEEIGYPVMLKASWGGGGRGMRVIRAEADLAKEVTEAKREAMAAFGKDE 204

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           + +E+ V+    +   ++GD   +V              ++  +       PA  +    
Sbjct: 205 VYLEKIVERARHVESQILGDTHGNVV-----HLFERDCSVQRRNQKVVERAPAPYLTDAQ 259

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +E+   +    +A    G    ++L D  + K +++E+N 
Sbjct: 260 RQELAAYSLKIAEATNYIGAGTVEYLMDADTGKFYFIEVNP 300


>gi|148261652|ref|YP_001235779.1| pyruvate carboxylase [Acidiphilium cryptum JF-5]
 gi|146403333|gb|ABQ31860.1| pyruvate carboxylase [Acidiphilium cryptum JF-5]
          Length = 1164

 Score = 81.3 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 40/238 (16%), Positives = 82/238 (34%), Gaps = 22/238 (9%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRS 96
             V  V    K D     +H  +G   E+           I +            +K+ +
Sbjct: 84  EEVLRVAEEAKAD----AIHPGYGFLSENPEFAEACAARGIAFIGPAPRTMRTLGNKVAA 139

Query: 97  KQVVSSCGVPV-CPSILVNRFTMDS---QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152
           +Q+  S GVPV   S  + R   +       I  P ++K   GG   G+  I+  + +  
Sbjct: 140 RQLAESVGVPVMPASAPLPRDAAEIGRIAAEIGYPVMLKASWGGGGRGMRPIEGAEGLAE 199

Query: 153 DLL----QSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYS 207
            +     ++ +    D++  E+ V     +   ++GD+  ++  +            K  
Sbjct: 200 QVETARREALAAFGNDEVYFEKLVRRARHVEVQILGDSHGNLVHLFERDCTIQRRHQK-- 257

Query: 208 SLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
                   PA  +     + +   A    +A   R     +FL D  + + +++E+N 
Sbjct: 258 ---VIERAPAPYLDAATREGLCAAALAIGRATDYRNAGTVEFLLDRETGRFYFIEVNP 312


>gi|34557492|ref|NP_907307.1| urea amidolyase-related protein [Wolinella succinogenes DSM 1740]
 gi|34483209|emb|CAE10207.1| UREA AMIDOLYASE-RELATED PROTEIN [Wolinella succinogenes]
          Length = 1200

 Score = 81.3 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 44/256 (17%), Positives = 90/256 (35%), Gaps = 32/256 (12%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       E   I +             K  ++++    GVP+ P   +
Sbjct: 77  AIHPGYGFLSENAAFARACEREGIVFIGPRPEQMESFGLKHTARELAIQSGVPLLPGSGL 136

Query: 114 NRFTMDS---QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQL 166
               +++      I  P ++K   GG  +G+ +   +Q +    L     +        +
Sbjct: 137 LSDLLEAKSEAKRIGYPVMLKSTAGGGGIGMQLCSNEQELEESFLTVKRLSENHFANSGV 196

Query: 167 LIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIY 224
            +E+YV     +   V GD    VT +           L+  +       PA  +  +  
Sbjct: 197 FLEKYVSTAHHIEVQVFGDRKGKVTIL-----GDRDCSLQRRNQKVVEETPAPHLSQECR 251

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
           + +   A    +++        +F++DPL +K ++LE+N             +    G +
Sbjct: 252 ESLYACAKKLMESVSYLSAGTVEFIYDPLEQKFYFLEVNT-----------RLQVEHGIT 300

Query: 285 FR----ELLLWMVEDA 296
                 +L+ WMV  A
Sbjct: 301 EEVSGVDLVEWMVHQA 316


>gi|327488990|gb|EGF20786.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus sanguinis
           SK1058]
          Length = 455

 Score = 81.3 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 77/220 (35%), Gaps = 16/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  FG   E+     + E + I +         L  DK+ ++  +    VPV P    
Sbjct: 77  AIHPGFGFLSENSKFATMCEEVGIKFIGPSGAVMDLMGDKINARAQMIKAKVPVIPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
            +  +   ++    I  P ++K   GG   GI  ++K + +         ++ +      
Sbjct: 137 EVHTSEEALEVAEKIGYPVMLKASAGGGGKGIRKVEKAEDLVAAFESASSEAKAAFGNGA 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+ +     +   ++ D    V  +            K             I   + 
Sbjct: 197 MYMERVIYPARHIEVQILADQQGHVVHLGERDCSLQRNNQKVL----EESPSVAIGKTLR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +++   A  A Q++G       +FL D    + +++E+N 
Sbjct: 253 QQIGEAAVRAAQSVGYENAGTIEFLLDEAKGEFYFMEMNT 292


>gi|325192947|emb|CCA27331.1| methylcrotonoylCoA carboxylase subunit alpha putativ [Albugo
           laibachii Nc14]
          Length = 626

 Score = 81.3 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 81/221 (36%), Gaps = 20/221 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+           I +    + A      K  SK+++ + G+PV      
Sbjct: 34  AVHPGYGFLSENADFAMECRDNGIQFIGPPVEAIVSMGSKSASKEIMIAAGIPVLHGYHG 93

Query: 114 NRFT----MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
           +  +          +  P +IK + GG   G+ ++      P  L     ++ S+    +
Sbjct: 94  DDQSDSRLQIEADSMGYPILIKAVLGGGGKGMRIVTNRNEFPEALEACRREAQSFFKDSR 153

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDI 223
           +L+E+Y+ +   +   +  D    +  +            K          PA  +   +
Sbjct: 154 VLLEKYLNNPRHIEYQIFADNYGQIVHLFERDCSIQRRHQK-----VIEEAPAINVIESL 208

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +++   A  A +A+G  G    +FL D    K +++E+N 
Sbjct: 209 RQKMGEAAIHAAKAVGYIGAGTVEFLLDQ--DKFYFMEMNT 247


>gi|324995086|gb|EGC26998.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus sanguinis
           SK678]
 gi|327461876|gb|EGF08207.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus sanguinis
           SK1]
          Length = 455

 Score = 81.3 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 77/220 (35%), Gaps = 16/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  FG   E+     + E + I +         L  DK+ ++  +    VPV P    
Sbjct: 77  AIHPGFGFLSENSKFATMCEEVGIKFIGPSGAVMDLMGDKINARAQMIKAKVPVIPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
            +  +   ++    I  P ++K   GG   GI  ++K + +         ++ +      
Sbjct: 137 EVHTSEEALEVAEKIGYPVMLKASAGGGGKGIRKVEKAEDLVAAFESASSEAKAAFGNGA 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+ +     +   ++ D    V  +            K             I   + 
Sbjct: 197 MYMERVIYPARHIEVQILADQQGHVVHLGERDCSLQRNNQKVL----EESPSVAIGKTLR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +++   A  A Q++G       +FL D    + +++E+N 
Sbjct: 253 QQIGEAAVRAAQSVGYENAGTIEFLLDEAKGEFYFMEMNT 292


>gi|312978335|ref|ZP_07790078.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus
           crispatus CTV-05]
 gi|310894854|gb|EFQ43925.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus
           crispatus CTV-05]
          Length = 1062

 Score = 81.3 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 42/297 (14%), Positives = 96/297 (32%), Gaps = 38/297 (12%)

Query: 22  CASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ--- 69
           C  AL+  G++   I         D   S  L    L  +   NV      E  +VQ   
Sbjct: 577 CVKALQKMGYEAIVINSNPETVSTDFSISDKLYFEPLTLEDVLNVCDLEKPEGVIVQFGG 636

Query: 70  -------AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDS 120
                    LE   +    + +     + D+    Q++    +     +        +++
Sbjct: 637 QTSINLAHGLEEHGVKILGTKVADVNRAEDRELFDQIIKQLHLNQPQGLTATTHEGVLEA 696

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P +++P        + ++     +   L           +L++ Y+DG E    
Sbjct: 697 ADKLGYPVLVRPSYVLGGKAMEIVYTKGELEEYLQDHVDIAADHPILVDDYLDGRECDVD 756

Query: 181 VMGDAS---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQ 236
            + D     L      +  +  +S        +S  V P +    ++ +++  +      
Sbjct: 757 AISDGKEVLLPGIMEHIEHAGVHS-------GDSMAVYPPQTFSDEVKEKITDVTRKLAL 809

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            + C GI    F+      +V+ +E+N +   T     P ++   G    ++   ++
Sbjct: 810 TLNCVGIMNIQFIVR--DGEVYVIEVNPRASRT----VPFLSKITGIEMAQVATRVI 860



 Score = 74.0 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 49/289 (16%), Positives = 99/289 (34%), Gaps = 39/289 (13%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI---------DVD------------RSVGLV 45
           G ++E + S   G     AL + G++V  +         D               S+  +
Sbjct: 21  GQAAEFDYS---GTQACLALREEGYEVVLVNSNPATIMTDTTIADKVYIEPLTVESISRI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +    PD     L G  G +  ++     IL+ L I    + + +   + D+ + K++  
Sbjct: 78  IRQEYPDAILPTLGGQVGLNMAMELAKTGILDELHIELLGTKLQSIEQAEDREKFKELCK 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
           S G PV PS  VN     +     I  P +++P       G  +    + +         
Sbjct: 138 SLGEPVPPSKTVNTVEDALAFGDEIGYPIIVRPAFTMGGTGGGICNNHEELAEIAKNGLE 197

Query: 160 WNHGDQLLIEQYVDG---IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216
            +   + LIE+ + G   +E       D +  +            +     + +S    P
Sbjct: 198 LSPVTECLIEKSIAGYKEVEFEVMRDHDDNAMIVCCMENFDPVGIH-----TGDSIVFSP 252

Query: 217 AK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           ++ +    Y+ ++  +    +A+   G        DP S     +E+N 
Sbjct: 253 SQTLSDKEYQMLRDCSLRLIRALKIEGGCNVQLALDPNSFNYDVIEVNP 301


>gi|293608524|ref|ZP_06690827.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292829097|gb|EFF87459.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 743

 Score = 81.3 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 41/257 (15%), Positives = 90/257 (35%), Gaps = 32/257 (12%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+     + E   I +             K  ++++     VP+ P   +
Sbjct: 77  AIHPGYGFLSENAEFCDLCESQGIAFIGPTSSQMLDFGLKHTARELAIKSNVPLLPGSSL 136

Query: 114 NRFTMDS---QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN----HGDQL 166
                ++      I  P ++K   GG  +G+ ++  +  +       S           L
Sbjct: 137 LSDEAEALTEAAHIGYPVMLKSTAGGGGIGMRLVWNETELKDAYQTVSYLAQVNFKDAGL 196

Query: 167 LIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIY 224
            +E++V     +   + GD    V  +           ++  +       PA  +     
Sbjct: 197 YLEKFVQHARHIEVQIFGDGQGQVLALGE-----RDCSVQRRNQKVIEETPAPHLNEQQR 251

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
           + +Q++A    Q++  R     +F+ D  +++ ++LE+N             +    G +
Sbjct: 252 EYLQKVAIQLMQSVNYRSAGTVEFVMDTETQEFYFLEVNT-----------RLQVEHGVT 300

Query: 285 ---FR-ELLLWMVEDAS 297
              F  +L+ WMV  AS
Sbjct: 301 EQVFGVDLVEWMVTLAS 317


>gi|242373336|ref|ZP_04818910.1| pyruvate carboxylase [Staphylococcus epidermidis M23864:W1]
 gi|242348699|gb|EES40301.1| pyruvate carboxylase [Staphylococcus epidermidis M23864:W1]
          Length = 1153

 Score = 81.3 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 34/221 (15%), Positives = 78/221 (35%), Gaps = 20/221 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+           I +    +    +  DK++++       +PV P    
Sbjct: 84  AIHPGYGFLSENEQFARRCAEEGIKFIGPHLEHLDMFGDKVKARTTAIRANLPVIPGTDG 143

Query: 112 LVNRFTMDSQHLI--SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
            +  F    Q  +    P +IK   GG   G+ +++++  +     ++ S         +
Sbjct: 144 PIESFEAAQQFALEAGFPLMIKATSGGGGKGMRIVREESELEDAFHRAKSEAEKSFGNSE 203

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDI 223
           + IE+Y+D    +   V+GD   ++  +           ++        V P   +   +
Sbjct: 204 VYIERYIDNPKHIEVQVIGDEQGNIIHLYE-----RDCSVQRRHQKVVEVAPSVGLSESL 258

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +   A    + I        +FL      + F++E+N 
Sbjct: 259 RERICEAAIQLMENIKYVNAGTVEFLV--SGDEFFFIEVNP 297


>gi|239759398|gb|ACS14663.1| biotin carboxylase [Camellia oleifera]
          Length = 533

 Score = 81.3 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 81/220 (36%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
           +LH  +G   E+ +   +     I +      +  + +DK  +++ + + GVP  P    
Sbjct: 142 MLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRVMVDKATARETMKNAGVPTVPGSEG 201

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS----IPLDLLQSSSWNHGDQ 165
            +      +     I  P +IK   GG   G+ + K+       +     ++++    D 
Sbjct: 202 LLQNTEEAVRLSEEIGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDG 261

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+Y+ +   +   V+ D   +V               K             +  ++ 
Sbjct: 262 VYLEKYIQNPRHIEFQVLADKFGNVVHFGERDCSIQRRNQKLL----EEAPSPALTPELR 317

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K +   A  A  +IG  G+   +FL D      +++E+N 
Sbjct: 318 KAMGDAAVAAAASIGYIGVGTVEFLLDER-GSFYFMEMNT 356


>gi|208434980|ref|YP_002266646.1| biotin carboxylase [Helicobacter pylori G27]
 gi|208432909|gb|ACI27780.1| biotin carboxylase [Helicobacter pylori G27]
          Length = 455

 Score = 81.3 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 37/225 (16%), Positives = 78/225 (34%), Gaps = 14/225 (6%)

Query: 49  LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
            + D  F   +G   E+     I     + +        AL  DK ++K V+   G+PV 
Sbjct: 84  FEADAIFPG-YGFLSENQNFVEICSHHSLEFIGPSAKVMALMSDKSKAKSVMKEAGMPVI 142

Query: 109 PS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSW 160
                 +   +   +    I  P +IK   GG   G+ V++    +         ++ S 
Sbjct: 143 EGSEGLLKSYQEAEEIADKIGYPVIIKAAAGGGGRGMRVVEDKSKLKNLYLAAETEALSA 202

Query: 161 NHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI 219
                + +E+++     +   ++ D   +V  +          + K             +
Sbjct: 203 FGDGSVYLEKFINKPKHIEVQILADKHGNVIHVGERDCSVQRRQQKLI----EETPAVVL 258

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              + + +   A  A + IG  G    +FL D   +  +++E+N 
Sbjct: 259 EEGVRERLLETAIKAAKYIGYVGAGTFEFLLDSNMKDFYFMEMNT 303


>gi|187933767|ref|YP_001885893.1| pyruvate carboxylase [Clostridium botulinum B str. Eklund 17B]
 gi|187721920|gb|ACD23141.1| pyruvate carboxylase [Clostridium botulinum B str. Eklund 17B]
          Length = 1146

 Score = 81.3 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 50/264 (18%), Positives = 98/264 (37%), Gaps = 32/264 (12%)

Query: 24  SAL-EDAGFKVSQIDVDRSVGLVLAHLKPDLAF--------NVLHGNFG---EDGLVQAI 71
            AL      +  QI   ++ G V A+L  D           + +H  +G   E+      
Sbjct: 41  RALFRTKAHEAYQIG--KNKGPVEAYLNIDEIIKLALKKNVDAIHPGYGFLSENPEFARR 98

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI----LVNRFTMDSQHLISPP 127
            E + I +            DK++SK V  + GVPV P +       +  ++   +   P
Sbjct: 99  CEEVGIEFIGPKSEMMDQLGDKIKSKIVAKNVGVPVIPGVEKPITCEKEAIEIAGMCGYP 158

Query: 128 YVIKPLKGGSSLGIIVIKKDQSIP-----LDLLQSSSWNHGDQLLIEQYVDG-IELTCGV 181
            +IK   GG   G+ +++ +  +             ++   D + IE+Y++G   +   +
Sbjct: 159 VMIKAAAGGGGRGMRIVRHENELVDSFLSAKNEAKKAFGIDD-MFIEKYIEGPKHIEIQI 217

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGC 240
           +GD   +V  +            K        + PA  +  +  +E+   A    +A+  
Sbjct: 218 LGDKYGNVVHLYERDCSIQRRHQK-----VIEISPALSLTQEKREEICTDALKIAKAVDY 272

Query: 241 RGISRSDFLFDPLSRKVFWLEINV 264
           R     +FL D      +++E+N 
Sbjct: 273 RNAGTLEFLVDMHGNH-YFIEMNP 295


>gi|171778065|ref|ZP_02919322.1| hypothetical protein STRINF_00157 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171283047|gb|EDT48471.1| hypothetical protein STRINF_00157 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 456

 Score = 81.3 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 78/220 (35%), Gaps = 16/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  FG   E+     + E + I +            DK+ ++  + +  VPV P    
Sbjct: 77  AIHPGFGFLSENSKFATMCEEMHIKFIGPSAEIMDKMGDKINARAEMIAANVPVIPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
            +      ++    +  P ++K   GG   GI  ++  Q +         ++ +      
Sbjct: 137 EVFTAEQALEVAEKLGYPVMLKASAGGGGKGIRKVESAQDLVPAFESASQEALAAFGNGA 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+ V     +   ++GD+  +V  +            K             I   + 
Sbjct: 197 MYIEKVVYPARHIEVQILGDSYGNVVHLGERDCSLQRNNQKVL----EESPSIAIGKTLR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            ++   A  A +A+G       +FL D  + + +++E+N 
Sbjct: 253 GKIGDAAVRAAKAVGYENAGTIEFLLDEKTSQFYFMEMNT 292


>gi|47213733|emb|CAF96094.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 733

 Score = 81.3 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 81/221 (36%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H  +G   E+       +   I +      A      K  SK ++S+ GVP+      
Sbjct: 113 AVHPGYGFLSENTEFAEACKQEGIIFIGPPSSAIRDMGIKSTSKHIMSAAGVPIIGGYHG 172

Query: 113 ---VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD----QSIPLDLLQSSSWNHGDQ 165
               N+        I  P +IK ++GG   G+ +   D    + +     ++    + D 
Sbjct: 173 EDQSNQRLQAEAAQIGYPVMIKAVRGGGGKGMRIACSDADFLEQLESARREARKSFNDDV 232

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDI 223
           +L+E++V D   +   V GD   +   +           ++          P   I  ++
Sbjct: 233 MLVEKFVEDPRHVEVQVFGDMHGNAVYL-----FERDCSVQRRHQKIIEEAPGPGIDAEV 287

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +++   A  A +A+   G    +F+ D      +++E+N 
Sbjct: 288 RRKLGEAAVRAAKAVSYVGAGTVEFIMDAQHN-FYFMEMNT 327


>gi|225445664|ref|XP_002266489.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 525

 Score = 81.3 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 79/220 (35%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
           +LH  +G   E+     +     I +      +  +  DK  ++  + + GVP  P    
Sbjct: 142 MLHPGYGFLAENATFVEMCREHGINFIGPNPDSIRVMGDKSTARDTMKNAGVPTVPGSEG 201

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS----IPLDLLQSSSWNHGDQ 165
            +      +   + I  P +IK   GG   G+ + K+       +     ++++    D 
Sbjct: 202 LLKSTEEGIKLANEIGYPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDG 261

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+Y+ +   +   V+ D   +V               K             +  ++ 
Sbjct: 262 VYLEKYIQNPRHIEFQVLADKFGNVVHFGERDCSIQRRNQKLL----EEAPSPALTSELR 317

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K +   A  A  +IG  G+   +FL D      +++E+N 
Sbjct: 318 KAMGDAAVAAAASIGYIGVGTVEFLLDER-GSFYFMEMNT 356


>gi|148559300|ref|YP_001259109.1| propionyl-CoA carboxylase subunit alpha [Brucella ovis ATCC 25840]
 gi|148370557|gb|ABQ60536.1| propionyl-CoA carboxylase, alpha subunit [Brucella ovis ATCC 25840]
          Length = 667

 Score = 81.3 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 45/240 (18%), Positives = 85/240 (35%), Gaps = 16/240 (6%)

Query: 34  SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDK 93
           S I +D+ +   +     D      +G   E+      L+   + +    + A     DK
Sbjct: 59  SYIVIDK-ILAAIKETGADAVHPG-YGFLSENPRFAEALKAANVTFIGPPVNAIDAMGDK 116

Query: 94  MRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQS 149
           + SK++ +  GV   P  +      D        I  P +IK   GG   G+ +   D+ 
Sbjct: 117 ITSKKLAAEAGVSTVPGHMGLIEDADEAVRIAGSIGYPVMIKASAGGGGKGMRIAWNDEE 176

Query: 150 ----IPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYEL 204
                 L   ++ S    D++ IE++V     +   V+GD   +V  +   +        
Sbjct: 177 AREGFQLSRNEAKSSFGDDRIFIEKFVTQPRHIEIQVLGDQHGNVVYLGERECSIQRRNQ 236

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K             +     K +   A    +A+G       +F+ D  +R  ++LE+N 
Sbjct: 237 K----VIEEAPSPFLDEVTRKAMGEQAVALAKAVGYYSAGTVEFIVDG-NRNFYFLEMNT 291


>gi|308069855|ref|YP_003871460.1| carbamoyl-phosphate synthase, pyrimidine-specific, large chain
           (carbamoyl-phosphate synthetase ammonia chain)
           [Paenibacillus polymyxa E681]
 gi|305859134|gb|ADM70922.1| Carbamoyl-phosphate synthase, pyrimidine-specific, large chain
           (Carbamoyl-phosphate synthetase ammonia chain)
           [Paenibacillus polymyxa E681]
          Length = 1071

 Score = 81.3 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 43/288 (14%), Positives = 106/288 (36%), Gaps = 37/288 (12%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQIDVDRS---------------------VGLV 45
           G ++E + +   G     AL++ G +V  I+ + +                     V  +
Sbjct: 21  GQAAEFDYA---GTQACQALKEEGVEVVLINSNPATIMTDTNMADKVYIEPITLDFVTQI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   +PD     L G  G +  V+     +LE   +    + + +   + D+   + ++ 
Sbjct: 78  IRQERPDGLLPTLGGQTGLNMAVELARAGVLERENVKLLGTQLNSIEQAEDRDLFRDLMR 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
               PV  S++V     +++  + I  P +++P       G  +   ++ +   +     
Sbjct: 138 ELEQPVPESVIVTTLEESLEFANEIGYPIIVRPAYTLGGTGGGICSTEEELRETVSSGLR 197

Query: 160 WNHGDQLLIEQYVDG---IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216
           ++   Q L+E+ + G   +E      G+ +     I V   + +     ++  +      
Sbjct: 198 YSPIGQCLVEKSIAGMKEVEYEVMRDGNDN----CIVVCNMENFDPVGVHTGDSIVVAPS 253

Query: 217 AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +    Y+ ++  +    +A+   G     F  DP S + + +E+N 
Sbjct: 254 QTLSDREYQMLRSASLKIIRALNIEGGCNVQFALDPHSYQYYVIEVNP 301



 Score = 63.6 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 38/265 (14%), Positives = 96/265 (36%), Gaps = 34/265 (12%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHG--------NFGEDGL 67
           A++ AG++   I         D + S  L    L  +   NV+           FG    
Sbjct: 588 AIQKAGYEAVIINNNPETVSTDFNTSDRLYFEPLFFEDVMNVIEQEKPIGVIVQFGGQTA 647

Query: 68  V--QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHL 123
           +   A L    +    + + +   + D+ + +Q++S   +       V        +   
Sbjct: 648 INLAAPLSAAGVNILGTNLESIDEAEDRKKFEQLLSRLAIAQPKGNTVTSVDEAVGTAQA 707

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           +  P +++P        + ++  D  +   + ++   N    +LI++Y+ G E+    + 
Sbjct: 708 LGYPVLVRPSYVLGGRAMEIVYSDTELLRYMEEAVKINPEHPVLIDRYMLGKEVEVDAIC 767

Query: 184 DAS---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIG 239
           D     +      V ++  +S        +S  V P + +  ++ +++  +     + + 
Sbjct: 768 DGETVLVPGIMEHVERAGVHS-------GDSIAVYPPQHLSAELKQKIVEITISIAKELK 820

Query: 240 CRGISRSDFLFDPLSRKVFWLEINV 264
             G+    F+      +V+ +E+N 
Sbjct: 821 TIGLVNIQFVIHQ--DQVYVIEVNP 843


>gi|261749211|ref|YP_003256896.1| acetyl-CoA carboxylase, biotin carboxylase [Blattabacterium sp.
           (Periplaneta americana) str. BPLAN]
 gi|261497303|gb|ACX83753.1| acetyl-CoA carboxylase, biotin carboxylase [Blattabacterium sp.
           (Periplaneta americana) str. BPLAN]
          Length = 458

 Score = 81.3 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 32/221 (14%), Positives = 78/221 (35%), Gaps = 18/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--I 111
            +H  +G   E+    ++ +   I +            +K+ +K+ +   G+   P    
Sbjct: 77  AIHPGYGFLSENAYFSSMCKKHGIKFIGPLPNHIIQMGNKISAKKTMKKAGISCLPGSDF 136

Query: 112 LVNRFTMDSQ---HLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGD 164
            +     + +     I  P +IK + GG   GI  +   + +         +S ++    
Sbjct: 137 FLESSYKEIEKMAEKIGYPLIIKAVSGGGGKGIRSVLDKEGLKRSWEEAKKESFAFFGKK 196

Query: 165 QLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            + IE+ + +   +   ++ D       ++           K             +   +
Sbjct: 197 DMYIEKLILNPRHIEIQIISDQYGKACHLSERDCSIQRRNQKLL----EEAPSPFLTPSL 252

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            K++  +A  A + I   G+   +FL D  +R  +++E+N 
Sbjct: 253 RKKMGEVAIKAAEFIRYEGVGTIEFLVD-QNRNFYFMEMNT 292


>gi|314936634|ref|ZP_07843981.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus hominis
           subsp. hominis C80]
 gi|313655253|gb|EFS18998.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus hominis
           subsp. hominis C80]
          Length = 1057

 Score = 81.3 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 50/297 (16%), Positives = 113/297 (38%), Gaps = 36/297 (12%)

Query: 25  ALEDAGFKVSQID---------------------VDRSVGLVLAHLKPDLAFNVLHGNFG 63
           AL++ G++V  ++                         +  ++   +PD     L G  G
Sbjct: 36  ALKEEGYRVILVNSNPATIMTDKEIADKVYIEPLTHDFIARIIRKEQPDALLPTLGGQTG 95

Query: 64  EDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFT 117
            +  +Q     +L+   +    + + +   + D+   + +++   VPV  S +VN     
Sbjct: 96  LNMAIQLHDSGVLKANNVELLGTKLESIQQAEDRELFRSLMNDLDVPVPESDIVNTVEQA 155

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IE 176
              +  +  P +++P       G  +   D+ +   +     ++   Q LIE+ + G  E
Sbjct: 156 FAFKEQVGYPLIVRPAFTMGGTGGGICHNDEELKEVVSNGLHYSPATQCLIEKSIAGYKE 215

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAH 235
           +   VM D + +   I V   +     +   + +S  V P++ +    Y+ ++ ++    
Sbjct: 216 IEYEVMRDKNDNA--IVVCNMENID-PVGIHTGDSVVVAPSQTLSDVEYQMLRDVSLKVI 272

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +A+G  G        DP S   + +E+N  P ++  S     +   GY   +L   +
Sbjct: 273 RALGIEGGCNVQLALDPYSLNYYIIEVN--PRVSRSS--ALASKATGYPIAKLAAKI 325



 Score = 73.2 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 24/192 (12%), Positives = 67/192 (34%), Gaps = 9/192 (4%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPL 133
            +    + +     + D+   + ++    VP          +  +++   I  P V++P 
Sbjct: 650 GVKILGTSLEDLNRAEDRKEFETLLRKIDVPQPKGKTATSPKEALENAREIGYPVVVRPS 709

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
                  + ++  D  +   + Q+   +    +L+++Y+ G E+    + D    +    
Sbjct: 710 YVLGGRAMEIVNSDAELENYMEQAVKASPEHPVLVDRYLTGKEIEVDAISDGETVIIPGI 769

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
           +   +           +S  V P + +  +  K ++       + +   G+    F+   
Sbjct: 770 MEHIERAGVHS----GDSIAVYPPQTLSDEEIKTLEDYTIKLAKGLNIVGLINIQFVIAH 825

Query: 253 LSRKVFWLEINV 264
               V+ LE+N 
Sbjct: 826 DG--VYVLEVNP 835


>gi|145250613|ref|XP_001396820.1| pyruvate carboxylase [Aspergillus niger CBS 513.88]
 gi|134082342|emb|CAK42357.1| unnamed protein product [Aspergillus niger]
          Length = 650

 Score = 81.3 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 45/233 (19%), Positives = 91/233 (39%), Gaps = 16/233 (6%)

Query: 42  VGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQ 98
               L  L  D A + +H  +G   E     A ++   I     G    + + DK+++KQ
Sbjct: 66  DSPFLVRLAQDNAIDAIHPGYGFLSESADFAARMQDAGITVIGPGSSVLSRTGDKLQAKQ 125

Query: 99  VVSSCGVPVCPSILVNRFTMDSQHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154
           +   C VPV P++      +         +  P ++K + GG   GI ++  D+ +   +
Sbjct: 126 LAVECDVPVLPAMAQPTADVAEVRAFVKQVQYPVMVKAVDGGGGRGIRLVYGDEGLEGAV 185

Query: 155 LQSSSWNHGDQLLIEQY-VDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212
             + + +    + +E+  V G   +   ++GD       + V         ++       
Sbjct: 186 RGAVNESPSGMVFVEKAAVKGFRHVEVQIIGDG------VEVRHLWERDCSVQRRFQKVV 239

Query: 213 HVLPAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + P+ I    + + V   A    +A   R +   +FL +  S + ++LEIN 
Sbjct: 240 EMAPSLIGDRGLVQRVVDAAVRMGRATRYRSLGTVEFLVNEGSGEFYFLEINP 292


>gi|195060974|ref|XP_001995899.1| GH14119 [Drosophila grimshawi]
 gi|193891691|gb|EDV90557.1| GH14119 [Drosophila grimshawi]
          Length = 700

 Score = 81.3 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 82/221 (37%), Gaps = 18/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E      + +   + +      A      K  SK ++++ GVP+      
Sbjct: 102 AIHPGYGFLSESVEFAELCQKEGVIFMGPPSSAIRDMGIKSTSKAIMAAAGVPIINGYHG 161

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
           +  + +       +I  P +IK ++GG   G+ + +K +     L  + + +        
Sbjct: 162 DDQSDECLQAEAKIIGFPLMIKAVRGGGGKGMRIAEKPEDFLGALNSARTESLKSFGDSS 221

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           +L+E+YV     +   V  D   D   +           ++          PA  +  ++
Sbjct: 222 VLLERYVRSPRHVEVQVFADQYGDAVYLWE-----RDCSVQRRHQKIIEEAPAPGLSEEL 276

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +E+   A  A +A+G  G    +F+ D       ++E+N 
Sbjct: 277 RRELGEAAVRAAKAVGYVGAGTVEFILDKEDLSFHFMEMNT 317


>gi|146319453|ref|YP_001199165.1| acetyl-CoA carboxylase biotin carboxylase subunit [Streptococcus
           suis 05ZYH33]
 gi|146321650|ref|YP_001201361.1| acetyl-CoA carboxylase biotin carboxylase subunit [Streptococcus
           suis 98HAH33]
 gi|253752468|ref|YP_003025609.1| biotin carboxylase subunit of acetyl-CoA carboxylase [Streptococcus
           suis SC84]
 gi|253754294|ref|YP_003027435.1| biotin carboxylase subunit of acetyl-CoA carboxylase [Streptococcus
           suis P1/7]
 gi|253756228|ref|YP_003029368.1| biotin carboxylase subunit of acetyl-CoA carboxylase [Streptococcus
           suis BM407]
 gi|145690259|gb|ABP90765.1| Biotin carboxylase [Streptococcus suis 05ZYH33]
 gi|145692456|gb|ABP92961.1| Biotin carboxylase [Streptococcus suis 98HAH33]
 gi|251816757|emb|CAZ52400.1| biotin carboxylase subunit of acetyl-CoA carboxylase [Streptococcus
           suis SC84]
 gi|251818692|emb|CAZ56528.1| biotin carboxylase subunit of acetyl-CoA carboxylase [Streptococcus
           suis BM407]
 gi|251820540|emb|CAR47296.1| biotin carboxylase subunit of acetyl-CoA carboxylase [Streptococcus
           suis P1/7]
 gi|292559074|gb|ADE32075.1| Acetyl-CoA carboxylase, biotin carboxylase [Streptococcus suis GZ1]
 gi|319758874|gb|ADV70816.1| acetyl-CoA carboxylase biotin carboxylase subunit [Streptococcus
           suis JS14]
          Length = 457

 Score = 81.3 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 78/220 (35%), Gaps = 16/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  FG   E+     + E + I +            DK+ ++  +    VPV P    
Sbjct: 77  AIHPGFGFLSENSKFATLCEEVGIKFIGPSGTVMDTMGDKINARAEMVKAQVPVIPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS-----SSWNHGD 164
            +L ++  ++    I  P ++K   GG   GI  ++K + +      +     +++++G 
Sbjct: 137 EVLTSQEALEIAEKIGYPVMLKASAGGGGKGIRKVEKAEDLVPAFESASSEAKAAFDNGA 196

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             +         +   ++ D    V  +            K             I   + 
Sbjct: 197 MYIERVVYPARHIEVQILADQHGHVIHLGERDCSLQRNNQKVL----EEAPSIAIGQTMR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + + + A  A Q++G       +FL D    + +++E+N 
Sbjct: 253 ERIGQAAVRAAQSVGYENAGTIEFLLDEAKGEFYFMEMNT 292


>gi|110635657|ref|YP_675865.1| pyruvate carboxylase [Mesorhizobium sp. BNC1]
 gi|110286641|gb|ABG64700.1| pyruvate carboxylase [Chelativorans sp. BNC1]
          Length = 1158

 Score = 81.3 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 75/221 (33%), Gaps = 18/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E            I +            +K+ ++ +    GVPV P+   
Sbjct: 85  AIHPGYGLLSESPEFAEACAANGIVFIGPSPETMRRLGNKVAARNLAVEVGVPVVPATEP 144

Query: 114 NRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSWNHGDQ 165
               MD+       I  P ++K   GG   G+ VI+ +  +         ++ +    D+
Sbjct: 145 LPDDMDAVAKMAAEIGFPVMLKASWGGGGRGMRVIRSEADLKREVMEAKREAKAAFGKDE 204

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           + +E+ V+    +   V+GD   +   +            K          PA  +    
Sbjct: 205 VYLEKLVERARHVEVQVLGDTHGNAVHLFERDCSIQRRNQK-----VVERAPAPYLDNAK 259

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             E+   A    +A    G    +FL D  +   +++E+N 
Sbjct: 260 RGELCGYALKIAEATKYIGAGTVEFLMDADTSAFYFIEVNP 300


>gi|302545216|ref|ZP_07297558.1| LOW QUALITY PROTEIN: acetyl/propionyl-CoA carboxylase, alpha
           subunit [Streptomyces hygroscopicus ATCC 53653]
 gi|302462834|gb|EFL25927.1| LOW QUALITY PROTEIN: acetyl/propionyl-CoA carboxylase, alpha
           subunit [Streptomyces himastatinicus ATCC 53653]
          Length = 528

 Score = 81.3 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 43/222 (19%), Positives = 86/222 (38%), Gaps = 19/222 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---- 109
            +H  +G   E+           + +      A  L  DK+R+K+ V + GVPV P    
Sbjct: 86  AVHPGYGFLAENAAFARACADAGLAFIGPPAGAIELMGDKIRAKETVRAAGVPVVPGSSG 145

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
           S L +   +D+   I  P ++KP  GG   G+ +++ +  +  ++  +          D 
Sbjct: 146 SGLTDAQLIDAAREIGTPVLLKPSAGGGGKGMRLVRDEALLADEIAAARREARGAFGDDT 205

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           LL+E+++D    +   V+ D    V  +   +        K          P+ +  D  
Sbjct: 206 LLVERWIDRPRHIEIQVLADGHGQVIHLGERECSLQRRHQK-----IIEEAPSPLLDDTT 260

Query: 225 KEVQ-RLAFLAHQAIGCRGISRSDFLFDPLSRKVF-WLEINV 264
           + +    A  A ++ G  G    +F+        + ++E+N 
Sbjct: 261 RALMGEAAVQAARSCGYVGAGTVEFIVPGADPSAYCFMEMNT 302


>gi|258565597|ref|XP_002583543.1| PycA protein [Uncinocarpus reesii 1704]
 gi|237907244|gb|EEP81645.1| PycA protein [Uncinocarpus reesii 1704]
          Length = 673

 Score = 81.3 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 39/203 (19%), Positives = 83/203 (40%), Gaps = 12/203 (5%)

Query: 69  QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD----SQHLI 124
           Q + E         G    A + +K+++KQ+  +CGVPV  +I      ++        +
Sbjct: 98  QRMWEEAGAKVIGPGWDVLAQTGNKLQAKQLADACGVPVLKAITQPTSDLNVIKAFAAEV 157

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ-YVDG-IELTCGVM 182
             P ++K + GG   GI +++ +  +   + +++  +   ++ +E+  V+G   +   V+
Sbjct: 158 GYPVMVKAVDGGGGRGIRLVRSESMLQTSVDRATGESPSRKVFVEKAAVEGYHHVEVQVI 217

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCR 241
           GD +  V  +           ++          PA I    + + V   A L    I   
Sbjct: 218 GDGTGQVRHLWE-----RDCSIQRRFQKIVECAPALIKDRGLIRRVIEAALLIASRIKYL 272

Query: 242 GISRSDFLFDPLSRKVFWLEINV 264
            +   +FL +    + ++LEIN 
Sbjct: 273 SLGTFEFLVNEQLSEFYFLEINP 295


>gi|256371819|ref|YP_003109643.1| Carbamoyl-phosphate synthase L chain ATP- binding [Acidimicrobium
           ferrooxidans DSM 10331]
 gi|256008403|gb|ACU53970.1| Carbamoyl-phosphate synthase L chain ATP- binding [Acidimicrobium
           ferrooxidans DSM 10331]
          Length = 646

 Score = 81.3 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 43/217 (19%), Positives = 84/217 (38%), Gaps = 21/217 (9%)

Query: 57  VLHGNFGEDGLVQAILEL---LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            LH  +G         E      + +      A AL  DK R+K  ++  GVP  P+   
Sbjct: 77  ALHPGYGFLSEHPGFAEAVIAAGLTWIGPPPEAIALMGDKERAKAHMARAGVPTLPTF-- 134

Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL-----QSSSWNHGDQLLI 168
                     +  P ++KP  GG   G+ V+++  ++   +       + ++   D++ +
Sbjct: 135 ----APDDPDVVLPVLVKPTAGGGGKGMDVVRERAALGAAIDAARRTAAGAFG-DDRVFL 189

Query: 169 EQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227
           E++V+ G  +   V+ D    V      +        K             +  D+ + +
Sbjct: 190 ERFVEVGRHVEIQVVADGHGAVVHCFERECSIQRRHQKVL----EEAPSPVLDADLRERM 245

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              A  A +A+G RG+   +FL +P     ++LE+N 
Sbjct: 246 GAAACAAARAVGYRGVGTVEFLLEP-DGSYWFLEMNT 281


>gi|306823637|ref|ZP_07457012.1| acetyl-coA carboxylase carboxyl transferase subunit alpha
           [Bifidobacterium dentium ATCC 27679]
 gi|304553344|gb|EFM41256.1| acetyl-coA carboxylase carboxyl transferase subunit alpha
           [Bifidobacterium dentium ATCC 27679]
          Length = 647

 Score = 81.3 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/198 (19%), Positives = 79/198 (39%), Gaps = 14/198 (7%)

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN----RFTMDSQHLISPPYVI 130
               +      A     DK+ +++V +   VP  P I  +    R  +D  H    P ++
Sbjct: 128 AGATWVGPNPKALVDLGDKITARRVATFAKVPPVPGISHSISDMRLLLDFAHTHGYPLML 187

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD--QLLIEQYVD-GIELTCGVMGDASL 187
           K   GG   GI +++ D  +    +   +   GD  +  +E+++D G  +      D   
Sbjct: 188 KRTDGGGGRGITLVRNDDELRGFYMNHDALQGGDLNEYFVERFIDKGRHVETQCGRDTHG 247

Query: 188 DVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRS 246
           + T  +          ++  +       PA  +P  + +++ R +    +A+G  G+   
Sbjct: 248 NFTVYST-----RDCSVQRRNQKLVEEAPAPFLPDTVMEQLARYSRNLFEAVGYVGLGTC 302

Query: 247 DFLFDPLSRKVFWLEINV 264
           +F+      KV++LE+N 
Sbjct: 303 EFMVTEQ-GKVYFLEVNP 319


>gi|207091935|ref|ZP_03239722.1| biotin carboxylase [Helicobacter pylori HPKX_438_AG0C1]
          Length = 455

 Score = 81.3 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/225 (16%), Positives = 78/225 (34%), Gaps = 14/225 (6%)

Query: 49  LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
            + D  F   +G   E+     I     + +        AL  DK ++K V+   G+PV 
Sbjct: 84  FEADAIFPG-YGFLSENQNFVEICSHHSLEFIGPSAKVMALMSDKSKAKSVMKEAGMPVI 142

Query: 109 PS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSW 160
                 +   +   +    I  P +IK   GG   G+ V++    +         ++ S 
Sbjct: 143 EGSDGLLKSYQEAEEIADKIGYPVIIKAAAGGGGRGMRVVEDKSKLKNLYLAAETEALSA 202

Query: 161 NHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI 219
                + +E+++     +   ++ D   +V  +          + K             +
Sbjct: 203 FGDGSVYLEKFINKPKHIEVQILADKHGNVIHVGERDCSVQRRQQKLI----EETPAVVL 258

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              + K +   A  A + IG  G    +FL D   +  +++E+N 
Sbjct: 259 EEGVRKRLLETAIKAAKYIGYVGAGTFEFLLDSNMKDFYFMEMNT 303


>gi|91200556|emb|CAJ73605.1| strongly similar to biotin carboxylase (A subunit of acetyl-CoA
           carboxylase) [Candidatus Kuenenia stuttgartiensis]
          Length = 448

 Score = 81.3 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 80/220 (36%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-SIL 112
            +H  +G   E      + E   I +      A     +K  ++++     VPV P S+ 
Sbjct: 77  AIHPGYGFLSEVSHFAEVCESSNIVFIGPKSDALRKLGNKTEARKIAIENKVPVVPGSLS 136

Query: 113 VNRFTMDS---QHLISPPYVIKPLKGGSSLGIIVIKKD----QSIPLDLLQSSSWNHGDQ 165
           V +   ++    H I  P +IK   GG   G+ V   D     S+ +   ++ +      
Sbjct: 137 VIKSQQEALSVAHEIGFPVIIKASLGGGGRGMRVAHNDISLINSLTIAQREAKAAFKDSS 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+Y+ D   +   ++GD   ++  +            K             I     
Sbjct: 197 IYIEKYIEDARHIEVQIVGDNYGNIIHLGERDCTMQRRHQK----LIEESPAPYITDRAR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +++ + A    ++I        +FL D  +   +++E+N 
Sbjct: 253 EDICKAAIKMAKSINYTNAGTVEFLLDKENN-YYFIEVNT 291


>gi|325955071|ref|YP_004238731.1| acetyl-CoA carboxylase, biotin carboxylase [Weeksella virosa DSM
           16922]
 gi|323437689|gb|ADX68153.1| acetyl-CoA carboxylase, biotin carboxylase [Weeksella virosa DSM
           16922]
          Length = 453

 Score = 81.3 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 77/221 (34%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     I     I +  +         DK  +K  + + GVPV P    
Sbjct: 77  AIHPGYGFLSENSTFSKICASNNIKFIGATPEQIDRMGDKANAKATMKAAGVPVVPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGD 164
            +      ++    I  P ++K   GG   G+  + K++ +           ++++ +  
Sbjct: 137 LLESYEQALEIAREIKFPVMLKATAGGGGKGMRAVWKEEDLLSAWESARTEAAAAFGNDG 196

Query: 165 QLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
             + E+ ++    +   V GD       ++           K             +  ++
Sbjct: 197 MYM-EKLIEEPRHIEIQVAGDQFGKACHLSERDCSIQRRNQK----LVEETPSPIMTEEL 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            K +   A  A + IG  G+   +FL D      +++E+N 
Sbjct: 252 RKRMGEAAIKAAEFIGYEGVGTIEFLVDKH-GDFYFMEMNT 291


>gi|295706552|ref|YP_003599627.1| acetyl-CoA carboxylase biotin carboxylase [Bacillus megaterium DSM
           319]
 gi|294804211|gb|ADF41277.1| acetyl-CoA carboxylase, biotin carboxylase [Bacillus megaterium DSM
           319]
          Length = 450

 Score = 81.3 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 78/221 (35%), Gaps = 18/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     +     + +      A      K  +++ +   GVP+ P    
Sbjct: 77  AIHPGYGFLAENADFAELCRECNVTFVGPSPEAINKMGTKDVARETMREAGVPIVPGSTG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGD 164
            +      M   + I  P +IK   GG   GI V K +Q +   +       ++++    
Sbjct: 137 IVESVEDGMSIANDIGYPVIIKATAGGGGKGIRVAKNEQELIKGITITQQEAATAFG-NP 195

Query: 165 QLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            + IE++++    +   V+ D+  +   +            K             +    
Sbjct: 196 GVYIEKFIEDFRHVEIQVLADSHGNTVHLGERDCSIQRRLQKLI----EETPSPALDEKT 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +   A  A QA+   G    +F++D    K +++E+N 
Sbjct: 252 RELMGDAAVKAAQAVNYTGAGTVEFIYDYRENKFYFMEMNT 292


>gi|283470325|emb|CAQ49536.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus ST398]
          Length = 1150

 Score = 81.3 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/221 (15%), Positives = 76/221 (34%), Gaps = 20/221 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+           I +    +    +  DK++++       +PV P    
Sbjct: 80  AIHPGYGFLSENEQFARRCAEEGIKFIGPHLEHLDMFGDKVKARTTAIKADLPVIPGTDG 139

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
            I       +       P +IK   GG   G+ +++++  +     ++ S         +
Sbjct: 140 PIKSYELAKEFAEEAGFPLMIKATSGGGGKGMRIVREESELEDAFHRAKSEAEKSFGNSE 199

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDI 223
           + IE+Y+D    +   V+GD   ++              ++        V P   +  D+
Sbjct: 200 VYIERYIDNPKHIEVQVIGDEHGNIV-----HLFERDCSVQRRHQKVVEVAPSVGLSSDL 254

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +   A    + I        +FL      + F++E+N 
Sbjct: 255 RQRICDAAIQLMENIKYVNAGTVEFLV--SGDEFFFIEVNP 293


>gi|253681005|ref|ZP_04861808.1| pyruvate carboxylase [Clostridium botulinum D str. 1873]
 gi|253562854|gb|EES92300.1| pyruvate carboxylase [Clostridium botulinum D str. 1873]
          Length = 1145

 Score = 81.3 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 78/222 (35%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+       E   I +            DK++SK V  S GVP  P    
Sbjct: 81  AIHPGYGFLSENAEFARKCEEAGIEFIGPTAEMMEKLGDKIKSKLVAQSVGVPTIPGVEK 140

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP-----LDLLQSSSWNHGD 164
            +      +        P ++K   GG   G+ +++  + +             ++   D
Sbjct: 141 PVTSEEEAIKFADFCGYPIMLKAAAGGGGRGMRIVRNKEELLPSFRSAKNEAKKAFGIDD 200

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + IE+Y++    +   V+GD   ++  +            K          PA  +P +
Sbjct: 201 -IFIEKYLENPKHIEVQVIGDKHGNIVHLYERDCSIQRRHQK-----VIEFTPAFALPEE 254

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +++   A    +++  R     +FL D      +++E+N 
Sbjct: 255 KREKICNDALKIAKSVNYRSAGTLEFLVDIHGNH-YFIEMNP 295


>gi|156329541|ref|XP_001619046.1| hypothetical protein NEMVEDRAFT_v1g152547 [Nematostella vectensis]
 gi|156201402|gb|EDO26946.1| predicted protein [Nematostella vectensis]
          Length = 254

 Score = 81.3 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 77/220 (35%), Gaps = 19/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E            + +         +  DK+ ++++  + GVPV P    
Sbjct: 26  AIHPGYGFLSERADFAHACTKSGVIFIGPSPQVVHMMGDKLEARKMAINSGVPVVPGTEN 85

Query: 114 NRFTMDSQHLI----SPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSWNHGDQ 165
              T +           P + K   GG   G+ VI K + +     L   ++ +      
Sbjct: 86  PIRTAEEAKQFCEEHGLPVITKAAYGGGGRGMRVIWKMEDLEEFFNLASNEAYAAFGDGS 145

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           + IE++++    +   VMGD   DV              ++        + PA  +   I
Sbjct: 146 MFIEKFIEKPRHIEVQVMGDNYGDVV-----HLFERDCSVQRRHQKVIEIAPAPHLDDAI 200

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            + +   A    +A+G       +FL D      +++E+N
Sbjct: 201 RQTLTEDAVRLCKAVGYSNAGTVEFLLDQEGNH-YFIEVN 239


>gi|86137605|ref|ZP_01056182.1| methylcrotonyl-CoA carboxylase, alpha subunit [Roseobacter sp.
           MED193]
 gi|85825940|gb|EAQ46138.1| methylcrotonyl-CoA carboxylase, alpha subunit [Roseobacter sp.
           MED193]
          Length = 649

 Score = 81.3 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 42/226 (18%), Positives = 79/226 (34%), Gaps = 25/226 (11%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      +E   + +      A      K  +K ++   GVPV P    
Sbjct: 78  AIHPGYGFLSENPEFVDAVEAAGLAFIGPSADAIRKMGLKDAAKALMEEAGVPVVPGYHG 137

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS-----SSWNHGD 164
                D        I  P +IK + GG   G+ +++        L  +     S++    
Sbjct: 138 TNQEADFLKAEADKIGYPVLIKAVAGGGGKGMRLVEAASEFADALASAQGEATSAFG-NP 196

Query: 165 QLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            +LIE+Y+     +   V GD +  V              L+          PA  +  +
Sbjct: 197 DVLIEKYIQQPRHIEIQVFGDGTQAV------HLFERDCSLQRRHQKVIEEAPAPGMTDE 250

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR----KVFWLEINV 264
           +   +      A +AIG +G    +F+ D  +       +++E+N 
Sbjct: 251 MRAAMGEAGVRAAEAIGYKGAGTVEFIVDGSNGLRADGFWFMEMNT 296


>gi|39935501|ref|NP_947777.1| acetyl-CoA carboxylase biotin carboxylase subunit [Rhodopseudomonas
           palustris CGA009]
 gi|39649353|emb|CAE27876.1| biotin carboxylase [Rhodopseudomonas palustris CGA009]
          Length = 450

 Score = 81.3 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 75/220 (34%), Gaps = 18/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     IL    + +         L  DK+ +K+     G+PV P    
Sbjct: 77  AVHPGYGFLSENARFAEILSDHNLHFIGPKAEHIRLMGDKIEAKKTAKRLGIPVVPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
            +  +   M     I  P ++K   GG   G+ V    + + L +     ++ +      
Sbjct: 137 GVGPDDDAMAIAKEIGFPVLVKAAAGGGGRGMKVAHTAEDLALAISTAGNEAKAAFGDAS 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+Y+     +   V+GD       +            K             I  +  
Sbjct: 197 VYLEKYLQKPRHIEIQVLGDGRGGAIHLGERDCSLQRRHQK----VWEESPSPVISPEAR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +  +   A Q +   G+   +FL+     + +++E+N 
Sbjct: 253 ARIGGICAKAMQDMQYLGVGTIEFLY--EDGEFYFIEMNT 290


>gi|309812383|ref|ZP_07706138.1| methylcrotonoyl-CoA carboxylase, alpha subunit [Dermacoccus sp.
           Ellin185]
 gi|308433688|gb|EFP57565.1| methylcrotonoyl-CoA carboxylase, alpha subunit [Dermacoccus sp.
           Ellin185]
          Length = 709

 Score = 81.3 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 39/216 (18%), Positives = 80/216 (37%), Gaps = 14/216 (6%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
           +G   E+    A  E   I +   G  A     DK+ +K  VS+  VPV P +  +  + 
Sbjct: 107 YGFLSENTAFAAACEEAGIAFLGPGSRAIETMGDKITAKTAVSAFDVPVVPGLARSGLSD 166

Query: 119 D----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQLLIEQ 170
           D    +   +  P +IKP  GG   G+ V+++ + +   + ++          D L +E+
Sbjct: 167 DELVAAASEVGFPVLIKPSAGGGGKGMHVVERAEDMADAVARARREAASSFGDDTLFLER 226

Query: 171 YV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           +V     +   V+ D   +V  +   +        K             +       +  
Sbjct: 227 FVLRPRHIEVQVIADKHGNVVHLGERECSLQRRHQK----VIEEAPSPLLDDATRARIGE 282

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLS-RKVFWLEINV 264
            A    +++   G    +F+    +  + F++E+N 
Sbjct: 283 AACNTARSVDYVGAGTVEFIVSADAPDEFFFMEMNT 318


>gi|295696784|ref|YP_003590022.1| carbamoyl-phosphate synthase, large subunit [Bacillus tusciae DSM
           2912]
 gi|295412386|gb|ADG06878.1| carbamoyl-phosphate synthase, large subunit [Bacillus tusciae DSM
           2912]
          Length = 1080

 Score = 81.3 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 52/286 (18%), Positives = 107/286 (37%), Gaps = 33/286 (11%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI---------DVD------------RSVGLV 45
           G ++E + +   G     AL + G++V  +         D+D             S+  +
Sbjct: 39  GQAAEFDYA---GTQACKALREEGYRVILVNSNPATIMTDLDMADVVYLEPLTPESLEAI 95

Query: 46  LAHLKPDLAFNVLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +A  +PD     L G  G +  V    + +L+   +    + + +   + D+   K+ + 
Sbjct: 96  IAKERPDGLLPTLGGQTGLNLAVALAERGVLDRYGVRLLGTPLASIQKAEDRELFKETME 155

Query: 102 SCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G PV  S +V+     M     I  P +++P       G  + +  +     L++   
Sbjct: 156 RIGEPVPESAIVHNMEEGMAFIEQIGLPVILRPAYTLGGTGGGIAETLEEFKAILMRGLR 215

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   Q+L+E+ + G  E+   VM D +   T I V   +       ++  +        
Sbjct: 216 QSPIGQVLVERSIRGWKEIEYEVMRDGAG--TCITVCNMENLDPVGVHTGDSIVVAPSQT 273

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +    Y+ ++  A     A+   G     F  DP S + + +E+N 
Sbjct: 274 LTDREYQMLRSAALRIIDALEIEGGCNVQFALDPHSERYYVIEVNP 319



 Score = 75.9 bits (186), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 53/294 (18%), Positives = 102/294 (34%), Gaps = 35/294 (11%)

Query: 18  SGKACASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGL- 67
           S  A   AL   GF+   I         D D +  L    L  +   NV+    G D + 
Sbjct: 594 SVHAV-WALRRLGFETVIINNNPETVSTDFDTADRLYFEPLTAEDVLNVIE-REGIDQVY 651

Query: 68  ----------VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR-- 115
                     + A L    +    + + A   + D+ R +Q++    +P           
Sbjct: 652 VQFGGQTAINLAAELAEYGVSVCGTPVEALDAAEDRERFRQLLDQLEIPQTRGGTAFDVP 711

Query: 116 FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175
                   +  P V++P        + V    Q +   + +++       +L++ Y+ G 
Sbjct: 712 GARAIAEAVGYPVVVRPSYVIGGRAMEVCWNVQELEAYMSRAARVTPDHPVLVDHYLPGK 771

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLA 234
           E+    + D      ++ +P    +       S +S  V P + +  D   ++ R+    
Sbjct: 772 EVEVDAISDGR----DVLIPGIFEHIERAGVHSGDSMAVYPDQTLTQDERAQMIRVTEQI 827

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
            +A+G  G+    F+   L   V+ LE+N +   T     P ++   G    EL
Sbjct: 828 ARALGIVGLMNIQFVI--LDGTVYVLEVNPRASRT----VPILSKVTGVPMVEL 875


>gi|289648713|ref|ZP_06480056.1| carbamoyl-phosphate synthase subunit L [Pseudomonas syringae pv.
           aesculi str. 2250]
          Length = 649

 Score = 81.3 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 78/221 (35%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      +E   + +      A      K  +K ++   GVP+ P    
Sbjct: 81  AIHPGYGFLSENADFARAIEEAGLIFLGPPASAIDAMGSKSAAKALMDQAGVPLVPGYHG 140

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
           +   ++    +   I  P ++K   GG   G+ V++    +   L  +           +
Sbjct: 141 DAQDIETFRSAAERIGYPVLLKATAGGGGKGMKVVEHSGEMAEALASAQREALSSFGDAR 200

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           +L+E+YV     +   V  D       +            K          PA  +  ++
Sbjct: 201 MLVEKYVLTPRHVEIQVFADRHGHCLYLNERDCSIQRRHQK-----VVEEAPAPGLTPEL 255

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            K +   A  A QAIG  G    +FL D    + F++E+N 
Sbjct: 256 RKAMGEAAVKAAQAIGYVGAGTVEFLLDAR-GEFFFMEMNT 295


>gi|317182337|dbj|BAJ60121.1| biotin carboxylase [Helicobacter pylori F57]
          Length = 455

 Score = 81.3 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/225 (16%), Positives = 78/225 (34%), Gaps = 14/225 (6%)

Query: 49  LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
            + D  F   +G   E+     I     + +        AL  DK ++K V+   G+PV 
Sbjct: 84  FEADAIFPG-YGFLSENQNFVEICSHHSLEFIGPSAKVMALMSDKSKAKSVMKEAGMPVI 142

Query: 109 PS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSW 160
                 +   +   +    I  P +IK   GG   G+ V++    +         ++ S 
Sbjct: 143 EGSDGLLKSYQEAEEIADKIGYPVIIKAAAGGGGRGMRVVEDKSKLKNLYLAAETEALSA 202

Query: 161 NHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI 219
                + +E+++     +   ++ D   +V  +          + K             +
Sbjct: 203 FGDGSVYLEKFINKPKHIEVQILADKHGNVIHVGERDCSVQRRQQKLI----EETPAVVL 258

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              + K +   A  A + IG  G    +FL D   +  +++E+N 
Sbjct: 259 EEGVRKRLLETAIKAAKYIGYVGAGTFEFLLDSNMKDFYFMEMNT 303


>gi|171741346|ref|ZP_02917153.1| hypothetical protein BIFDEN_00426 [Bifidobacterium dentium ATCC
           27678]
 gi|283455297|ref|YP_003359861.1| accC Acetyl-/propionyl-CoA carboxylase subunit alpha
           [Bifidobacterium dentium Bd1]
 gi|171276960|gb|EDT44621.1| hypothetical protein BIFDEN_00426 [Bifidobacterium dentium ATCC
           27678]
 gi|283101931|gb|ADB09037.1| accC Acetyl-/propionyl-CoA carboxylase alpha chain [Bifidobacterium
           dentium Bd1]
          Length = 620

 Score = 81.3 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/198 (19%), Positives = 79/198 (39%), Gaps = 14/198 (7%)

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN----RFTMDSQHLISPPYVI 130
               +      A     DK+ +++V +   VP  P I  +    R  +D  H    P ++
Sbjct: 101 AGATWVGPNPKALVDLGDKITARRVATFAKVPPVPGISHSISDMRLLLDFAHTHGYPLML 160

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD--QLLIEQYVD-GIELTCGVMGDASL 187
           K   GG   GI +++ D  +    +   +   GD  +  +E+++D G  +      D   
Sbjct: 161 KRTDGGGGRGITLVRNDDELRGFYMNHDALQGGDLNEYFVERFIDKGRHVETQCGRDTHG 220

Query: 188 DVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRS 246
           + T  +          ++  +       PA  +P  + +++ R +    +A+G  G+   
Sbjct: 221 NFTVYST-----RDCSVQRRNQKLVEEAPAPFLPDTVMEQLARYSRNLFEAVGYVGLGTC 275

Query: 247 DFLFDPLSRKVFWLEINV 264
           +F+      KV++LE+N 
Sbjct: 276 EFMVTEQ-GKVYFLEVNP 292


>gi|164686618|ref|ZP_02210646.1| hypothetical protein CLOBAR_00211 [Clostridium bartlettii DSM
           16795]
 gi|164604347|gb|EDQ97812.1| hypothetical protein CLOBAR_00211 [Clostridium bartlettii DSM
           16795]
          Length = 1068

 Score = 81.3 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 42/288 (14%), Positives = 95/288 (32%), Gaps = 30/288 (10%)

Query: 22  CASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ--- 69
           C  AL     +   +         D D S  L    L  +   N++     E  ++Q   
Sbjct: 580 CIKALRKLDIETIIVNNNPETVSTDFDTSDKLYFEPLTEEEVLNIIEKEKPEGVILQFGG 639

Query: 70  -------AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
                    L+   IP   +       + D+ +  +++    +     I V       +H
Sbjct: 640 QTAIKLAKFLDEKNIPILGTDFADIDAAEDREKFDELLEKLNINRPKGIAVWSTEEGVKH 699

Query: 123 L--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +++P       G+ +   +  +   L  +   +  + +LI++Y+ G E+   
Sbjct: 700 ASEIGYPVLVRPSYVLGGQGMEITYNEAKLKAYLDSAFERDSKNPVLIDKYLVGREIEVD 759

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
            + D    +    +   +       +S  + T      I  DI  ++          +  
Sbjct: 760 AICDKEDILIPGIMEHLERAGV---HSGDSITMYPSQNISDDIKAKILDYTKRISLELNV 816

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
            G+    F+      +++ +E+N +   T     P ++  +G    +L
Sbjct: 817 LGMVNIQFI--EFKGELYIIEVNPRASRT----VPYISKVSGVPIVDL 858



 Score = 57.1 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 49/289 (16%), Positives = 99/289 (34%), Gaps = 39/289 (13%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQID---------------------VDRSVGLV 45
           G ++E + S   G     AL++ G +V  I+                        ++  V
Sbjct: 21  GQAAEFDYS---GTQACEALKEEGVEVVLINSNPATIMTDKEVAHKIYIEPLTIEAIEKV 77

Query: 46  LAHLKPDLAFNVLHGNFGEDG-------LVQAILELLEIPYTHSGILASALSMDKMRSKQ 98
           +   +PD   ++L G  G+             IL+   +    + I +     D+   ++
Sbjct: 78  IEKERPD---SLLAGMGGQTALNLAVELADAGILDKYGVKVIGTSIKSIKKGEDRDEFRE 134

Query: 99  VVSSCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
           ++ S   PV  S +V      +     I  P +I+P       G  + +  + +   L  
Sbjct: 135 MMRSINQPVIESDIVTNLEDGIIYAEKIGYPVIIRPAYTLGGTGGGIAENKEELIEILTH 194

Query: 157 SSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215
               +   Q+LIE+ + G  E+   VM D + +   I V   +       ++  +     
Sbjct: 195 GLQLSPVTQVLIEKSIKGWKEIEYEVMRDGNGN--CITVCNMENVDPVGVHTGDSIVVAP 252

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              +    Y+ ++  +     AI  +G         P   +   +EIN 
Sbjct: 253 SQTLSDKEYQLLRTASIEIINAIEVKGGCNVQIALHPHRLEYAIIEINP 301


>gi|326405142|ref|YP_004285224.1| pyruvate carboxylase [Acidiphilium multivorum AIU301]
 gi|325052004|dbj|BAJ82342.1| pyruvate carboxylase [Acidiphilium multivorum AIU301]
          Length = 1147

 Score = 81.3 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 40/238 (16%), Positives = 82/238 (34%), Gaps = 22/238 (9%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRS 96
             V  V    K D     +H  +G   E+           I +            +K+ +
Sbjct: 67  EEVLRVAEEAKAD----AIHPGYGFLSENPEFAEACAARGIAFIGPAPRTMRTLGNKVAA 122

Query: 97  KQVVSSCGVPV-CPSILVNRFTMDS---QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152
           +Q+  S GVPV   S  + R   +       I  P ++K   GG   G+  I+  + +  
Sbjct: 123 RQLAESVGVPVMPASAPLPRDAAEIGRIAAEIGYPVMLKASWGGGGRGMRPIEGAEGLAE 182

Query: 153 DLL----QSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYS 207
            +     ++ +    D++  E+ V     +   ++GD+  ++  +            K  
Sbjct: 183 QVETARREALAAFGNDEVYFEKLVRRARHVEVQILGDSHGNLVHLFERDCTIQRRHQK-- 240

Query: 208 SLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
                   PA  +     + +   A    +A   R     +FL D  + + +++E+N 
Sbjct: 241 ---VIERAPAPYLDAATREGLCAAALAIGRATDYRNAGTVEFLLDRETGRFYFIEVNP 295


>gi|300869330|ref|ZP_07113921.1| Urea carboxylase [Oscillatoria sp. PCC 6506]
 gi|300332707|emb|CBN59119.1| Urea carboxylase [Oscillatoria sp. PCC 6506]
          Length = 1207

 Score = 81.3 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 39/257 (15%), Positives = 95/257 (36%), Gaps = 32/257 (12%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-SIL 112
            +H  +G   E+       +   I +             K  ++++ +   VP+ P S L
Sbjct: 77  AIHPGYGFLSENAEFAEACDRENIAFIGPTPAQLRSFGLKHTARELAAENHVPLTPGSQL 136

Query: 113 VNRFTMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD----QL 166
           +N     +     I  P ++K   GG  +G+ V   ++ +     +    +  +     +
Sbjct: 137 LNSLEAAAVAAKAIGYPVMLKSTAGGGGIGLQVCLSEEDLAEAFEKVQRLSQSNFKQSGV 196

Query: 167 LIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIY 224
            +E+Y+     +   + GD   +V  +           ++  +       PA  I   + 
Sbjct: 197 FLEKYIQTARHIEVQIFGDGKGNVIALGE-----RDCSVQRRNQKVIEETPAPGIRDQLR 251

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
           +++   A    +A+  +     +F++D  +++ ++LE+N             +    G +
Sbjct: 252 EQLYAAAVKMGKAVNYQSAGTVEFVYDVDTKQFYFLEVNT-----------RLQVEHGVT 300

Query: 285 FR----ELLLWMVEDAS 297
                 +L+ WM++ AS
Sbjct: 301 ETVNRIDLVEWMIKLAS 317


>gi|289739867|gb|ADD18681.1| methylcrotonoyl-coenzyme A carboxylase 1 alpha [Glossina morsitans
           morsitans]
          Length = 702

 Score = 81.3 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 78/221 (35%), Gaps = 18/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E      + +   + +      A      K  SK ++S+ GVP+      
Sbjct: 105 AIHPGYGFLSESVEFAELCQREGVIFMGPPSSAIRDMGIKSTSKAIMSAAGVPIINGYHG 164

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
           +  + D        I  P +IK ++GG   G+ V  K       L  + + +        
Sbjct: 165 DDQSNDRLQAEAEKIGFPLMIKAVRGGGGKGMRVADKADDFMTALNSARTESQKSFGDSS 224

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           +L+E+YV     +   V  D   +   +           ++          PA  +  D+
Sbjct: 225 VLLERYVRSPRHVEVQVFADQYGEAVYLWE-----RDCSVQRRHQKIIEEAPAPGLSDDL 279

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +   A  A +A+G  G    +F+ D       ++E+N 
Sbjct: 280 RRALGEAAVRAAKAVGYVGAGTVEFIMDKEDLSFHFMEMNT 320


>gi|86739701|ref|YP_480101.1| carbamoyl-phosphate synthase L chain, ATP-binding [Frankia sp.
           CcI3]
 gi|86566563|gb|ABD10372.1| Carbamoyl-phosphate synthase L chain, ATP-binding [Frankia sp.
           CcI3]
          Length = 1056

 Score = 81.3 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 48/235 (20%), Positives = 89/235 (37%), Gaps = 16/235 (6%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
           R +   L     D A+ V  G   ED   + + E L + +      A     DK+ +K++
Sbjct: 69  RVLERALVETGADAAW-VGWGFVAEDPAFEELCERLGVTFIGPSSEAMRKLGDKIGAKRI 127

Query: 100 VSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL- 154
               GVPV P     +      + +   I  P ++K   GG   GI VI+ +  +     
Sbjct: 128 AEEVGVPVAPWSRGPVESLDAALAAAAKIGYPLMLKAAAGGGGRGIRVIRDESELVNAFE 187

Query: 155 ----LQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209
                 + ++      L E+ + G   +   V+ D       + V          K    
Sbjct: 188 RTRQEAARAFGIDVMFL-ERLITGARHVEVQVIADGQGTAWALGVRDCSVQRRNQKVIEE 246

Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +++ V    +  +    ++  A     A+G RG +  +FL+ P  ++V +LE+N 
Sbjct: 247 SASPV----LSPEQAANLKAAAERLIVAVGYRGAATVEFLYHPGDKQVTFLEVNT 297


>gi|152975580|ref|YP_001375097.1| acetyl-CoA carboxylase biotin carboxylase subunit [Bacillus cereus
           subsp. cytotoxis NVH 391-98]
 gi|152024332|gb|ABS22102.1| Carbamoyl-phosphate synthase L chain ATP-binding [Bacillus
           cytotoxicus NVH 391-98]
          Length = 445

 Score = 81.3 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 82/220 (37%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+  +    +   I +        A    K+ S+  +    VPV P I  
Sbjct: 77  AIHPGYGLLSENPSLAIRCKEEGIAFIGPSDEIIAKMGSKIESRLAMQEANVPVVPGITT 136

Query: 114 N----RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
           N       ++    I  P ++K   GG  +G+ +++ +Q++         ++ ++    +
Sbjct: 137 NIETAEEALEIAKQIGYPLMLKASAGGGGIGMQLMETEQTLTKAFESNKTRAQNFFGNGE 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+Y+ D   +   ++ D   +   +   +        K             +     
Sbjct: 197 MYLERYIADAHHIEIQILADTHGNTVYLWERECSVQRRNQK----VIEEAPSPFLDEKTR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K++  +A  A +A+G       +FL D      ++LE+N 
Sbjct: 253 KKMGEVAVQAAKALGYTNAGTVEFLVDDQKN-FYFLEMNT 291


>gi|325695142|gb|EGD37043.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus sanguinis
           SK150]
          Length = 455

 Score = 81.3 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 77/220 (35%), Gaps = 16/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  FG   E+     + E + I +         L  DK+ ++  +    VPV P    
Sbjct: 77  AIHPGFGFLSENSKFATMCEEVGIKFIGPSGAVMDLMGDKINARAQMIKAEVPVIPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
            +  +   ++    I  P ++K   GG   GI  ++K + +         ++ +      
Sbjct: 137 EVHTSEEALEVAEKIGYPVMLKASAGGGGKGIRKVEKAEDLVAAFESASSEAKAAFGNGA 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+ +     +   ++ D    V  +            K             I   + 
Sbjct: 197 MYMERVIYPARHIEVQILADQQGHVVHLGERDCSLQRNNQKVL----EESPSVAIGKTLR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +++   A  A Q++G       +FL D    + +++E+N 
Sbjct: 253 QQIGEAAVRAAQSVGYENAGTIEFLLDEAKGEFYFMEMNT 292


>gi|330801748|ref|XP_003288886.1| propionyl-CoA carboxylase [Dictyostelium purpureum]
 gi|325081079|gb|EGC34609.1| propionyl-CoA carboxylase [Dictyostelium purpureum]
          Length = 702

 Score = 81.3 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 43/222 (19%), Positives = 86/222 (38%), Gaps = 22/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      LE + + +   G  A     DK+ SK++    GV V P  + 
Sbjct: 107 AVHPGYGFLSENAKFVKELEKIGVTFIGPGSYAMHALGDKIESKRIAKEAGVSVVPGFIG 166

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
               +D      + I  P ++K   GG   G+ + + D+ + +    S          D+
Sbjct: 167 EVDGIDHVIKIANDIGYPVMVKASAGGGGKGMRICRNDEDVKIGFRLSKQEAKSSFGDDR 226

Query: 166 LLIEQYVD-GIELTCGVM--GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD 222
           +LIE+Y++ G  +   ++  GD +L   E             + +         + I  +
Sbjct: 227 MLIEKYIEHGRHIEIQILSDGDNALYFPERECS-------IQRRNQKVIEEAPSSFITPE 279

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + + + + A      +G +     +FL D      ++LE+N 
Sbjct: 280 VRERMGKEAAALANKVGYKSAGTVEFLVDSERNH-YFLEMNT 320


>gi|325277406|ref|ZP_08143024.1| 3-methylcrotonyl-CoA carboxylase alpha subunit [Pseudomonas sp.
           TJI-51]
 gi|324097450|gb|EGB95678.1| 3-methylcrotonyl-CoA carboxylase alpha subunit [Pseudomonas sp.
           TJI-51]
          Length = 561

 Score = 81.3 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 81/220 (36%), Gaps = 19/220 (8%)

Query: 58  LHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
           +H  +G   E+      +E   + +      A      K  +K ++ + GVP+ P     
Sbjct: 82  IHPGYGFLSENAGFARAIEQAGLIFLGPPASAIDAMGSKSAAKALMEAAGVPLVPGYHGE 141

Query: 115 RFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQL 166
              +D    +   I  P ++K   GG   G+ V++++  +   L     ++ +     ++
Sbjct: 142 AQDLDTFRDAARRIGYPVLLKASAGGGGKGMKVVEEESQLADALASAQREAQASFGDARM 201

Query: 167 LIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIY 224
           L+E+YV     +   V  D       +            K          PA  +  ++ 
Sbjct: 202 LVEKYVLKPRHVEIQVFADQHGHCLYLNERDCSIQRRHQK-----VVEEAPAPGLSAELR 256

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +   A  A QAIG  G    +FL D      F++E+N 
Sbjct: 257 RAMGEAAVRAAQAIGYVGAGTVEFLLDAR-GAFFFMEMNT 295


>gi|167626490|ref|YP_001676990.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Francisella
           philomiragia subsp. philomiragia ATCC 25017]
 gi|241668926|ref|ZP_04756504.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Francisella
           philomiragia subsp. philomiragia ATCC 25015]
 gi|254877458|ref|ZP_05250168.1| acetyl-CoA carboxylase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|167596491|gb|ABZ86489.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Francisella
           philomiragia subsp. philomiragia ATCC 25017]
 gi|254843479|gb|EET21893.1| acetyl-CoA carboxylase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
          Length = 451

 Score = 81.3 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/222 (15%), Positives = 79/222 (35%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         +  DK+ + + +   GVP  P    
Sbjct: 77  AIHPGYGFLSENAKFAKAVEESGFIFIGPRAENIEVMGDKVEAIKYMKKAGVPCVPGSGG 136

Query: 112 ---LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GD 164
                 +  ++    I  P +IK   GG   G+ +++K + +   +  + S        D
Sbjct: 137 PLGSDEKKNLEIAEQIGYPVIIKAAGGGGGRGMSIVRKKEDLISAISLTKSEARIAFNND 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLD 222
            + +E++++    +   V GD   +   +            +          PA  +  +
Sbjct: 197 MVYMEKFLENPRHIEIQVFGDGQGNAVYL-----FERDCSTQRRHQKVIEEAPAIGLTDE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             K +      A + +  RG    +FL+   + + +++E+N 
Sbjct: 252 ERKRIGEQCVNACKILKYRGAGTFEFLY--ENGEFYFIEMNT 291


>gi|331015340|gb|EGH95396.1| acetyl-CoA carboxylase biotin carboxylase subunit [Pseudomonas
           syringae pv. lachrymans str. M302278PT]
          Length = 336

 Score = 81.3 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 78/221 (35%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+      +E   + +         +  DK+ +K+ +   GVP  P    
Sbjct: 77  AIHPGYGFLSENAAFAERIEQAGLTFIGPSAACIRVMGDKVAAKRAMREAGVPCVPGPDT 136

Query: 111 --ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGD 164
                    +     I  P ++K   GG   G+ V+ ++Q +   +     ++       
Sbjct: 137 SMPADPHSILAIARDIGYPVIVKAAGGGGGRGMRVVHEEQQLLDAIALTGEEARRAFGNP 196

Query: 165 QLLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           +L IE++ V    +   V+ DA  +   +            K             +   +
Sbjct: 197 ELYIEKFLVQPRHVEIQVLCDAYGNAVWLGSRDCSMQRRHQKVL----EEAPAPGVDAAL 252

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              V      A + IG +G+   +FLF   + + +++E+N 
Sbjct: 253 MTRVGERCAQACRQIGYQGVGTFEFLF--ENDEFYFIEMNT 291


>gi|228474952|ref|ZP_04059680.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus hominis
           SK119]
 gi|228270937|gb|EEK12325.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus hominis
           SK119]
          Length = 1057

 Score = 81.3 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 50/297 (16%), Positives = 113/297 (38%), Gaps = 36/297 (12%)

Query: 25  ALEDAGFKVSQID---------------------VDRSVGLVLAHLKPDLAFNVLHGNFG 63
           AL++ G++V  ++                         +  ++   +PD     L G  G
Sbjct: 36  ALKEEGYRVILVNSNPATIMTDKEIADKVYIEPLTHDFIARIIRKEQPDALLPTLGGQTG 95

Query: 64  EDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFT 117
            +  +Q     +L+   +    + + +   + D+   + +++   VPV  S +VN     
Sbjct: 96  LNMAIQLHDSGVLKANNVELLGTKLESIQQAEDRELFRSLMNDLDVPVPESDIVNTVEQA 155

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IE 176
              +  +  P +++P       G  +   D+ +   +     ++   Q LIE+ + G  E
Sbjct: 156 FAFKEQVGYPLIVRPAFTMGGTGGGICHNDEELKEVVSNGLHYSPATQCLIEKSIAGYKE 215

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAH 235
           +   VM D + +   I V   +     +   + +S  V P++ +    Y+ ++ ++    
Sbjct: 216 IEYEVMRDKNDNA--IVVCNMENID-PVGIHTGDSVVVAPSQTLSDVEYQMLRDVSLKVI 272

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +A+G  G        DP S   + +E+N  P ++  S     +   GY   +L   +
Sbjct: 273 RALGIEGGCNVQLALDPYSLNYYIIEVN--PRVSRSS--ALASKATGYPIAKLAAKI 325



 Score = 73.2 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 24/192 (12%), Positives = 67/192 (34%), Gaps = 9/192 (4%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPL 133
            +    + +     + D+   + ++    VP          +  +++   I  P V++P 
Sbjct: 650 GVKILGTSLEDLNRAEDRKEFEALLRKIDVPQPKGKTATSPKEALENAREIGYPVVVRPS 709

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
                  + ++  D  +   + Q+   +    +L+++Y+ G E+    + D    +    
Sbjct: 710 YVLGGRAMEIVNSDAELENYMEQAVKASPEHPVLVDRYLTGKEIEVDAISDGETVIIPGI 769

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
           +   +           +S  V P + +  +  K ++       + +   G+    F+   
Sbjct: 770 MEHIERAGVHS----GDSIAVYPPQTLSDEEIKTLEDYTIKLAKGLNIVGLINIQFVIAH 825

Query: 253 LSRKVFWLEINV 264
               V+ LE+N 
Sbjct: 826 DG--VYVLEVNP 835


>gi|254369743|ref|ZP_04985753.1| hypothetical protein FTAG_01076 [Francisella tularensis subsp.
           holarctica FSC022]
 gi|157122702|gb|EDO66831.1| hypothetical protein FTAG_01076 [Francisella tularensis subsp.
           holarctica FSC022]
          Length = 451

 Score = 81.3 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/222 (15%), Positives = 80/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +      +  +  DK+ + + +   GVP  P    
Sbjct: 77  AIHPGYGFLSENAKFAKAVEESGFIFIGPRAESIEIMGDKVEAIRYMKKAGVPCVPGSGG 136

Query: 112 ---LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GD 164
                 +  ++    I  P +IK   GG   G+ +++K + +   +  + S        D
Sbjct: 137 PLGSDEKKNLEIAEKIGYPVIIKAAGGGGGRGMSIVRKKKDLISAISLTKSEARIAFNND 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLD 222
            + +E++++    +   V GD   +   +            +          PA  +  +
Sbjct: 197 MVYMEKFLENPRHIEIQVFGDGEGNAVYL-----FERDCSTQRRHQKVIEEAPAIGLSDE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             K +      A + +  RG    +FL+   + + +++E+N 
Sbjct: 252 ERKRIGEQCVSACKILKYRGAGTFEFLY--ENGEFYFIEMNT 291


>gi|83949684|ref|ZP_00958417.1| acetyl-CoA carboxylase [Roseovarius nubinhibens ISM]
 gi|83837583|gb|EAP76879.1| acetyl-CoA carboxylase [Roseovarius nubinhibens ISM]
          Length = 449

 Score = 81.3 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 72/220 (32%), Gaps = 18/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---- 109
            +H  +G   E+     I+E  ++ +         +  DK+ +K  +   GVP  P    
Sbjct: 77  AIHPGYGFLSENANFVQIVEDHDLTFIGPTAEHIRIMGDKITAKDTMKDLGVPCVPGSDG 136

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
            +            I  P ++K   GG   G+ V      I         ++ +    D+
Sbjct: 137 GVPDVESAKALCAEIGYPVIVKATAGGGGRGMKVAMSAAEIESAFRTARTEAKAAFGNDE 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+Y+     +   V GD       +            K             I  +  
Sbjct: 197 VYIEKYLTTPRHIEIQVFGDGKGGAVHLGERDCSLQRRHQKVF----EEAPGPCISQEER 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             + ++   A   I   G    +FL++    + +++E+N 
Sbjct: 253 DRIGKICADAVARINYTGAGTIEFLYEK--GEFYFIEMNT 290


>gi|327481930|gb|AEA85240.1| acetyl-CoA carboxylase, biotin carboxylase, putative [Pseudomonas
           stutzeri DSM 4166]
          Length = 636

 Score = 80.9 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 79/221 (35%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      +E   + +      A      K  +K ++   GVP+ P    
Sbjct: 80  AIHPGYGFLSENAEFARAIEQAGLIFLGPPGSAIDAMGSKSAAKALMEEAGVPLVPGYHG 139

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
               ++    +   I  P ++K   GG   G+ V++++  +   L  +           +
Sbjct: 140 EAQDVETFRAAAEKIGYPVLLKATAGGGGKGMKVVEREADLAEALASAQREAQSSFGDSR 199

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           +L+E+YV     +   V  D   +   +            K          PA  +  ++
Sbjct: 200 MLVEKYVLKPRHVEIQVFADQHGNCLYLNERDCSIQRRHQK-----VVEEAPAPGLSPEL 254

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +   A  A + IG  G    +FL D    + F++E+N 
Sbjct: 255 RRAMGEAAVKAAKTIGYVGAGTVEFLLDAR-GEFFFMEMNT 294


>gi|308185590|ref|YP_003929721.1| UreA amidolyase-related protein [Pantoea vagans C9-1]
 gi|308056100|gb|ADO08272.1| UreA amidolyase-related protein [Pantoea vagans C9-1]
          Length = 1205

 Score = 80.9 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 30/215 (13%), Positives = 71/215 (33%), Gaps = 14/215 (6%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN---R 115
           +G   E        +   I +             K R++++ +S GVP+ P   +     
Sbjct: 82  YGFLSESQPFADACDAAGIAFVGPTAQQIGEFGLKHRARELAASAGVPMTPGTPLLASLE 141

Query: 116 FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQLLIEQY 171
             + +   I  P ++K   GG  +G+       ++             +     + +E+ 
Sbjct: 142 EALQAADDIGYPVMLKSTAGGGGIGLTRCADADALASAWESVRRLGEQFFSDAGVFLERC 201

Query: 172 VD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQR 229
           +D    +   + GD   +V  +           L+  +       PA  +       +  
Sbjct: 202 IDRARHVEVQIFGDGKGNVVALGE-----RDCSLQRRNQKVVEETPAPGLSQATRDALLA 256

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            A    + +  R     ++++D   +  ++LE+N 
Sbjct: 257 SAVRLGELVNYRSAGTVEYIYDVSQQAFYFLEVNT 291


>gi|226311918|ref|YP_002771812.1| biotin carboxylase [Brevibacillus brevis NBRC 100599]
 gi|226094866|dbj|BAH43308.1| biotin carboxylase [Brevibacillus brevis NBRC 100599]
          Length = 451

 Score = 80.9 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 81/221 (36%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H  +G   E+     I     I +      A     DK  +K  + + GVP  P    
Sbjct: 77  AIHPGYGFLAENADFAEICAACNITFIGPDPEAIVKMGDKSTAKDTMKTAGVPTVPGTEG 136

Query: 113 VNRFTMDS---QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS-----SSWNHGD 164
           +     D+    + I  P ++K   GG   G+ V   D+ +   + Q+     +++    
Sbjct: 137 LIEDVADAVVTANKIGYPVMVKATAGGGGRGMRVAVDDEDLEKAIRQAQNEAKTAFG-NP 195

Query: 165 QLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            + +E++V+G   +   +M D   +   +            K             +  ++
Sbjct: 196 GVYLEKFVEGPRHVEIQIMADKHGNAVYLGERDCSIQRRHQK----LIEEAPSPALSEEL 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +++   A  A +A+   G    +FL D    K +++E+N 
Sbjct: 252 RRQMGDAAVAAAKAVSYHGAGTVEFLLDKH-GKFYFMEMNT 291


>gi|312622392|ref|YP_004024005.1| carbamoyl-phosphate synthase, large subunit [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312202859|gb|ADQ46186.1| carbamoyl-phosphate synthase, large subunit [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 1075

 Score = 80.9 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 53/289 (18%), Positives = 105/289 (36%), Gaps = 39/289 (13%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQID-------VDRS--------------VGLV 45
           G ++E + S   G     AL++ G +V  I+        D++              +  +
Sbjct: 21  GQAAEFDYS---GSQACKALKEEGIEVILINSNPATIMTDKTMADSIYIEPITCEIIEKI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   + D     L G  G +  V+     IL+   +    + I A   + D+   KQ++ 
Sbjct: 78  IQKERVDAILPTLGGQTGLNTAVELYKSGILDKYNVKVIGTNIEAIEFAEDRQLFKQLMI 137

Query: 102 SCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G PV PS +VN     +     I  P +I+P       G  +   ++       +  S
Sbjct: 138 KIGEPVVPSEVVNCVEDGLAFAKKIGFPVIIRPAYTLGGTGGGIANNEEEFVEIARRGLS 197

Query: 160 WNHGDQLLIEQYVDG---IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216
           ++   Q+L+E+ + G   IE       +  L              +     + +S  + P
Sbjct: 198 YSPVHQILVEKSIKGWKEIEYEVMRDSNGCLITVCNMENIDPVGIH-----TGDSIVIAP 252

Query: 217 AK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           ++ +    Y+ ++  A     A+   G     F  +P S +   +E+N 
Sbjct: 253 SQTLSDKEYQMLRSSALKIIDALKIEGGCNVQFALNPDSFEYAVIEVNP 301



 Score = 76.3 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 53/306 (17%), Positives = 111/306 (36%), Gaps = 39/306 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLV 68
           S  +   AL   G K   I         D D S  L    L  +   NV+     E  +V
Sbjct: 578 SVHSVY-ALSKLGIKSVIINNNPETVSTDFDTSDMLFFEPLTKEDVLNVIETVKAEGVIV 636

Query: 69  Q----------AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI--LVNRF 116
           Q            L    I    +      ++ D+ R  ++++   +   P       + 
Sbjct: 637 QFGGQTAIKLSQQLAKEGIKIFGTSAEGIDIAEDRERFDKILNKLNIKRPPGYTCYTLQE 696

Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
            +   + +  P +++P       G+ +   D  I   L  + + N    +LI++Y+ G E
Sbjct: 697 ALRIANSLGYPVLVRPSYVLGGQGMKIAFDDDDIVEMLSYAKNLN-NHPILIDKYIVGKE 755

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAH 235
           +    + D      +I +P    +       S +S  + PA+ I   I +++        
Sbjct: 756 IEVDAISDGE----DILIPGIMEHIERAGIHSGDSISLYPARNISKYIEEKIVEYTLKIA 811

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEMAAYA----GYSFR 286
           + + C+G+    F+    + +++ +E+N       P ++ V+  P +        GY  +
Sbjct: 812 RELECKGLMNVQFIV--QNEELYVIEVNPRGSRTVPFLSKVTGVPMVELATMVSLGYKLK 869

Query: 287 ELLLWM 292
           +L+  +
Sbjct: 870 DLVNTV 875


>gi|260549612|ref|ZP_05823830.1| biotin carboxylase [Acinetobacter sp. RUH2624]
 gi|260407405|gb|EEX00880.1| biotin carboxylase [Acinetobacter sp. RUH2624]
          Length = 1201

 Score = 80.9 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 41/257 (15%), Positives = 89/257 (34%), Gaps = 32/257 (12%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+     + E   I +             K  ++++     VP+ P   +
Sbjct: 77  AIHPGYGFLSENAEFCDLCESQGIAFIGPTSSQMLDFGLKHTARELAIKSNVPLLPGSSL 136

Query: 114 NRFTMDS---QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN----HGDQL 166
                ++      I  P ++K   GG  +G+ ++  +  +       S           L
Sbjct: 137 LANEAEALTEAARIGYPVMLKSTAGGGGIGMRLVWNETELKDAYQTVSYLAQVNFKDAGL 196

Query: 167 LIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIY 224
            +E++V     +   + GD    V  +           ++  +       PA  +     
Sbjct: 197 YLEKFVQHARHIEVQIFGDGQGQVLALGE-----RDCSVQRRNQKVIEETPAPHLNEQQR 251

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
             +Q++A    Q++  R     +F+ D  +++ ++LE+N             +    G +
Sbjct: 252 DYLQKVAVQLMQSVNYRSAGTVEFVMDTETQEFYFLEVNT-----------RLQVEHGVT 300

Query: 285 ---FR-ELLLWMVEDAS 297
              F  +L+ WMV  AS
Sbjct: 301 EQVFGVDLVEWMVTLAS 317


>gi|241896270|ref|ZP_04783566.1| pyruvate carboxylase [Weissella paramesenteroides ATCC 33313]
 gi|241870511|gb|EER74262.1| pyruvate carboxylase [Weissella paramesenteroides ATCC 33313]
          Length = 1145

 Score = 80.9 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 79/221 (35%), Gaps = 20/221 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+    A +E   I +    +    +  DK+ +KQ+     VP  P    
Sbjct: 77  AIHPGYGFLSENDEFAAAVEAAGIKFVGPKVEHLKIFGDKIIAKQIAIKADVPTVPGTDH 136

Query: 114 NRFTMDSQHLI----SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
               +            P  +K   GG   G+ V++ ++ +     +++S          
Sbjct: 137 PVADVAEALAFGETHGYPLFVKSAAGGGGRGMRVVEHEEELKEAFERAASEAKQSFGKPD 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDI 223
           + +E+Y+ D   +   ++ D   +V  +    S       K          PA  + + +
Sbjct: 197 IYLEKYLRDPKHVEIQILADEQGEVMHLFERDSSIQRRHQK-----IIEFAPAVSVSVAM 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +Q  A    +++  +     +FL        +++E+N 
Sbjct: 252 RQRIQDAALRLMRSVHYQSAGTVEFLV--EGDNFYFIEVNP 290


>gi|317009692|gb|ADU80272.1| biotin carboxylase [Helicobacter pylori India7]
          Length = 458

 Score = 80.9 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/225 (16%), Positives = 78/225 (34%), Gaps = 14/225 (6%)

Query: 49  LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
            + D  F   +G   E+     I     + +        AL  DK ++K V+   G+PV 
Sbjct: 87  FEADAIFPG-YGFLSENQNFVEICSHHSLEFIGPSAKVMALMSDKSKAKSVMKEAGMPVI 145

Query: 109 PS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSW 160
                 +   +   +    I  P +IK   GG   G+ V++    +         ++ S 
Sbjct: 146 EGSDGLLKSYQEAEEIADKIGYPVIIKAAAGGGGRGMRVVEDKSKLKNLYLAAETEALSA 205

Query: 161 NHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI 219
                + +E+++     +   ++ D   +V  +          + K             +
Sbjct: 206 FGDGSVYLEKFINKPKHIEVQILADKHGNVIHVGERDCSVQRRQQKLI----EETPAVVL 261

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              + K +   A  A + IG  G    +FL D   +  +++E+N 
Sbjct: 262 GESVRKRLLETAIKAAKYIGYVGAGTFEFLLDSNMKDFYFMEMNT 306


>gi|313108040|ref|ZP_07794206.1| geranyl-CoA carboxylase, alpha-subunit (biotin-containing)
           [Pseudomonas aeruginosa 39016]
 gi|310880708|gb|EFQ39302.1| geranyl-CoA carboxylase, alpha-subunit (biotin-containing)
           [Pseudomonas aeruginosa 39016]
          Length = 661

 Score = 80.9 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 69/220 (31%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       E   I +      A  L   K  SK  + + GVP  P    
Sbjct: 79  AIHPGYGFLSENAEFARACEAAGIVFIGPDAEAIHLMGSKRLSKIAMLAAGVPCIPGYEG 138

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS-----SWNHGD 164
                         I  P +IK   GG   G+ ++++   +   L  +      ++   +
Sbjct: 139 AEQDDATLRREAERIGYPLMIKASAGGGGRGMRLVQEPGQLLEQLRTARSEALGAFGSAE 198

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
            +L         +   V GD   ++  +            K             +  D+ 
Sbjct: 199 LILERAVPRPRHVEIQVFGDRHGNLLYLGERDCSVQRRHQK----VIEEAPCPVLDADLR 254

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +   A  A  ++   G    +FL      + ++LE+N 
Sbjct: 255 RAMGEAAVKAAASVNYVGAGTVEFLL-GEDGRFYFLEMNT 293


>gi|330901167|gb|EGH32586.1| 3-methylcrotonyl-CoA carboxylase alpha subunit [Pseudomonas
           syringae pv. japonica str. M301072PT]
          Length = 657

 Score = 80.9 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 76/221 (34%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      +E   + +      A      K  +K ++   GVP+ P    
Sbjct: 81  AIHPGYGFLSENADFARAIENAGLIFLGPPASAIDAMGSKSAAKALMEQAGVPLVPGYHG 140

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
               ++    +   I  P ++K   GG   G+ V++    +   L  +           +
Sbjct: 141 EAQDIETFRAAAERIGYPVLLKATAGGGGKGMKVVEHTGELAEALASAQREALSSFGDAR 200

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           +L+E+YV     +   V  D       +            K          PA  +   +
Sbjct: 201 MLVEKYVLTPRHVEIQVFADRHGHCLYLNERDCSIQRRHQK-----VVEEAPAPGLTASL 255

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            K +   A  A QAIG  G    +FL D    + F++E+N 
Sbjct: 256 RKAMGEAAVKAAQAIGYVGAGTVEFLLDAR-GEFFFMEMNT 295


>gi|324991694|gb|EGC23626.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus sanguinis
           SK353]
          Length = 455

 Score = 80.9 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 77/220 (35%), Gaps = 16/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  FG   E+     + E + I +         L  DK+ ++  +    VPV P    
Sbjct: 77  AIHPGFGFLSENSKFATMCEEVGIKFIGPSGAVMDLMGDKINARAQMIKAKVPVIPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
            +  +   ++    I  P ++K   GG   GI  ++K + +         ++ +      
Sbjct: 137 EVHTSEEALEVAEKIGYPVMLKASAGGGGKGIRKVEKAEDLVAAFESASSEAKAAFGNGA 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+ +     +   ++ D    V  +            K             I   + 
Sbjct: 197 MYMERVIYPARHIEVQILADQQGHVVHLGERDCSLQRNNQKVL----EESPSVAIGKTLR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +++   A  A Q++G       +FL D    + +++E+N 
Sbjct: 253 QQIGDAAVRAAQSVGYENAGTIEFLLDEAKGEFYFMEMNT 292


>gi|304396496|ref|ZP_07378377.1| urea carboxylase [Pantoea sp. aB]
 gi|304356005|gb|EFM20371.1| urea carboxylase [Pantoea sp. aB]
          Length = 1205

 Score = 80.9 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/215 (14%), Positives = 71/215 (33%), Gaps = 14/215 (6%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN---R 115
           +G   E        +   I +             K R++++ +S GVP+ P   +     
Sbjct: 82  YGFLSESQPFADACDAAGIAFVGPTAQQIGEFGLKHRARELAASAGVPMTPGTPLLASLE 141

Query: 116 FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQLLIEQY 171
             M +   I  P ++K   GG  +G+       ++             +     + +E+ 
Sbjct: 142 EAMQAADKIGYPVMLKSTAGGGGIGLTRCADADALASAWESVRRLGEQFFSDAGVFLERC 201

Query: 172 VD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQR 229
           +D    +   + GD   +V  +           L+  +       PA  +       +  
Sbjct: 202 IDRARHVEVQIFGDGKGNVVALGE-----RDCSLQRRNQKVVEETPAPGLSQATRDALLA 256

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            A    + +  R     ++++D   +  ++LE+N 
Sbjct: 257 SAVRLGERVNYRSAGTVEYIYDVSQQAFYFLEVNT 291


>gi|114766609|ref|ZP_01445561.1| pyruvate carboxylase [Pelagibaca bermudensis HTCC2601]
 gi|114541149|gb|EAU44202.1| pyruvate carboxylase [Roseovarius sp. HTCC2601]
          Length = 1147

 Score = 80.9 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/221 (14%), Positives = 75/221 (33%), Gaps = 18/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+           I +            DK  +++V    GVPV P+  V
Sbjct: 80  AIHPGYGLLSENPEFVDACVAAGITFIGPRAETMRALGDKASARKVAIEAGVPVIPATEV 139

Query: 114 NRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ----SSSWNHGDQ 165
                 +       I  P ++K   GG   G+  I+  + +   +L+    + +     +
Sbjct: 140 LGDDFKAIAKEAEEIGYPLMLKASWGGGGRGMRPIESGKELKEKVLEGRREAEAAFGNGE 199

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
             +E+ +     +   ++GD   ++  +           ++  +       PA  +    
Sbjct: 200 GYLEKMITRARHVEVQILGDKQGNIYHLYE-----RDCSVQRRNQKVVERAPAPYLSEAQ 254

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +E+  L       +        +FL D  +   +++E+N 
Sbjct: 255 REELCELGRKICAHVNYECAGTVEFLMDMETGNFYFIEVNP 295


>gi|307942614|ref|ZP_07657962.1| methylcrotonoyl-CoA carboxylase subunit alpha [Roseibium sp.
           TrichSKD4]
 gi|307774253|gb|EFO33466.1| methylcrotonoyl-CoA carboxylase subunit alpha [Roseibium sp.
           TrichSKD4]
          Length = 664

 Score = 80.9 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 46/227 (20%), Positives = 79/227 (34%), Gaps = 26/227 (11%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      L+   I +      +      K  +K ++   GVPV P    
Sbjct: 77  AVHPGYGFLSENPDFVDALDAAGITFIGPSADSIRAMGLKDAAKALMEKAGVPVVPGY-- 134

Query: 114 NRFTMDS------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS----SSWNHG 163
           +R T D+         I  P +IK   GG   G+  +         L  +     +    
Sbjct: 135 HRETQDAGFLKIQAGKIGYPVLIKARAGGGGKGMRRVDHPDEFMSALSSAQREGEASFGD 194

Query: 164 DQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPL 221
            ++LIE+YV     +   V GD   +               L+          PA  +P 
Sbjct: 195 GRVLIEKYVAKPRHIEIQVFGDKHGNAV-----HLFERDCSLQRRHQKVIEEAPAPDMPE 249

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR----KVFWLEINV 264
           D+ K +   A  A +AI   G    +F+ D        + +++E+N 
Sbjct: 250 DMRKAMGEAAVKAAKAINYAGAGTIEFIVDVSEGLRADRFYFMEMNT 296


>gi|255323919|ref|ZP_05365045.1| pyruvate carboxylase [Corynebacterium tuberculostearicum SK141]
 gi|255299099|gb|EET78390.1| pyruvate carboxylase [Corynebacterium tuberculostearicum SK141]
          Length = 1143

 Score = 80.9 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/240 (15%), Positives = 80/240 (33%), Gaps = 19/240 (7%)

Query: 35  QIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKM 94
            +D+D  +       + D  +   +G   E   +    E   I +         L+ DK 
Sbjct: 68  YLDIDE-IIRAAKKAEADAIYPG-YGFLSERADLARACEDNGIKFIGPTPSTLDLTGDKA 125

Query: 95  RSKQVVSSCGVPVC----PSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150
            +       G+P      PS  V++  ++     + P  +K + GG   G+  ++ +  +
Sbjct: 126 AAVSAAKEAGLPTLQDSEPSTDVDKL-VEYSKDFNFPVFVKAVAGGGGRGMRFVESEDQL 184

Query: 151 -----PLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205
                       +++  G   L    ++   +   ++ D+  +V              ++
Sbjct: 185 REKAAEASREAEAAFGDGSVYLETAVINPQHIEVQILADSQGNVV-----HLFERDCSVQ 239

Query: 206 YSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
                   + PA  +  ++   + + A    + I   G    +FL D     VF  E+N 
Sbjct: 240 RRHQKVVEIAPAPSLDSELRDRICQDAVKFCEHINYEGAGTVEFLVDERGNHVFI-EMNP 298


>gi|254779638|ref|YP_003057744.1| biotin carboxylase [Helicobacter pylori B38]
 gi|254001550|emb|CAX29568.1| Biotin carboxylase (Acetyl-CoA carboxylase subunit A)(ACC)
           [Helicobacter pylori B38]
          Length = 455

 Score = 80.9 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/225 (16%), Positives = 78/225 (34%), Gaps = 14/225 (6%)

Query: 49  LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
            + D  F   +G   E+     I     + +        AL  DK ++K V+   G+PV 
Sbjct: 84  FEADAIFPG-YGFLSENQNFVEICSHHSLEFIGPSAKVMALMSDKSKAKSVMKEAGMPVI 142

Query: 109 PS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSW 160
                 +   +   +    I  P +IK   GG   G+ V++    +         ++ S 
Sbjct: 143 EGSEGLLKSYQEAEEIADKIGYPVIIKAAAGGGGRGMRVVEDKSKLKNLYLAAETEALSA 202

Query: 161 NHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI 219
                + +E+++     +   ++ D   +V  +          + K             +
Sbjct: 203 FGDGSVYLEKFINKPKHIEVQILADKHGNVIHVGERDCSVQRRQQK----LIEETPAVVL 258

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              + + +   A  A + IG  G    +FL D   +  +++E+N 
Sbjct: 259 EEGVRERLLETAIKAAKYIGYVGAGTFEFLLDSNMKDFYFMEMNT 303


>gi|309802992|ref|ZP_07697093.1| Carbamoyl-phosphate synthase L chain, ATP binding domain protein
           [Bifidobacterium dentium JCVIHMP022]
 gi|308220459|gb|EFO76770.1| Carbamoyl-phosphate synthase L chain, ATP binding domain protein
           [Bifidobacterium dentium JCVIHMP022]
          Length = 594

 Score = 80.9 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/198 (19%), Positives = 79/198 (39%), Gaps = 14/198 (7%)

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN----RFTMDSQHLISPPYVI 130
               +      A     DK+ +++V +   VP  P I  +    R  +D  H    P ++
Sbjct: 75  AGATWVGPNPKALVDLGDKITARRVATFAKVPPVPGISHSISDMRLLLDFAHTHGYPLML 134

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD--QLLIEQYVD-GIELTCGVMGDASL 187
           K   GG   GI +++ D  +    +   +   GD  +  +E+++D G  +      D   
Sbjct: 135 KRTDGGGGRGITLVRNDDELRGFYMNHDALQGGDLNEYFVERFIDKGRHVETQCGRDTHG 194

Query: 188 DVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRS 246
           + T  +          ++  +       PA  +P  + +++ R +    +A+G  G+   
Sbjct: 195 NFTVYST-----RDCSVQRRNQKLVEEAPAPFLPDTVMEQLARYSRNLFEAVGYVGLGTC 249

Query: 247 DFLFDPLSRKVFWLEINV 264
           +F+      KV++LE+N 
Sbjct: 250 EFMVTEQ-GKVYFLEVNP 266


>gi|319939770|ref|ZP_08014127.1| acetyl-CoA carboxylase [Streptococcus anginosus 1_2_62CV]
 gi|319811108|gb|EFW07419.1| acetyl-CoA carboxylase [Streptococcus anginosus 1_2_62CV]
          Length = 455

 Score = 80.9 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 78/220 (35%), Gaps = 16/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  FG   E+     + E + I +         L  DK+ ++  +    VPV P    
Sbjct: 77  AIHPGFGFLSENSKFATMCEEVGIKFIGPSGAVMDLMGDKINARAQMIKANVPVIPGSGG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
            +  +   +     I  P ++K   GG   GI  ++K + +         ++ +      
Sbjct: 137 EVHTSDEALAVAEKIGYPVMLKASAGGGGKGIRKVEKAEDLVAAFESASREAKAAFGNGA 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+ +     +   ++ D    V  +            K             I   + 
Sbjct: 197 MYMERVIYPARHIEVQILADQHGHVVHLGERDCSLQRNNQKVL----EESPSVAIGKTLR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +++   A  A +++G       +FLFD   R+ +++E+N 
Sbjct: 253 QKIGEAAVRAAKSVGYENAGTIEFLFDEDKREFYFMEMNT 292


>gi|314933378|ref|ZP_07840743.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus caprae
           C87]
 gi|313653528|gb|EFS17285.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus caprae
           C87]
          Length = 1057

 Score = 80.9 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 53/315 (16%), Positives = 119/315 (37%), Gaps = 39/315 (12%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQID---------------------VDRSVGLV 45
           G ++E + +   G     AL++ G++V  ++                         +  +
Sbjct: 21  GQAAEFDYA---GTQACLALKEEGYRVILVNSNPATIMTDKEIADKVYIEPLTHDFIARI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   +PD     L G  G +  +Q     +L    +    + + +   + D+   + +++
Sbjct: 78  IRKEQPDALLPTLGGQTGLNMAIQLHDSGVLAANNVKLLGTELESIQQAEDREMFRTLMN 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
              VPV  S +VN      + +  +  P +++P       G  +   D  +   +     
Sbjct: 138 DLNVPVPESDIVNTVEQAFEFKEQVGYPLIVRPAFTMGGTGGGICYNDDDLKEIVSNGLH 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
           ++   Q LIE+ + G  E+   VM D + +   I V   +     +   + +S  V P++
Sbjct: 198 YSPATQCLIEKSIAGYKEIEYEVMRDKNDNA--IVVCNMENID-PVGIHTGDSIVVAPSQ 254

Query: 219 -IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
            +    Y+ ++ ++    +A+G  G        DP S   + +E+N  P ++  S     
Sbjct: 255 TLSDVEYQMLRDVSLKVIRALGIEGGCNVQLALDPHSLNYYIIEVN--PRVSRSS--ALA 310

Query: 278 AAYAGYSFRELLLWM 292
           +   GY   +L   +
Sbjct: 311 SKATGYPIAKLAAKI 325



 Score = 67.5 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 24/192 (12%), Positives = 68/192 (35%), Gaps = 9/192 (4%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVC--PSILVNRFTMDSQHLISPPYVIKPL 133
            +    + +     + D+   + ++    VP     +    +  +++   I  P V++P 
Sbjct: 650 GVQIMGTSLEDLNRAEDRKEFEALLRQIEVPQPQGKTSTSPKEALENAREIGYPVVVRPS 709

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
                  + ++  DQ +   + Q+   +    +L+++Y+ G E+    + D    +    
Sbjct: 710 YVLGGRAMEIVDNDQELENYMTQAVKASPEHPVLVDRYLTGKEIEVDAICDGDTVIIPGI 769

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
           +   +           +S  V P + +  +    ++       + +   G+    F+   
Sbjct: 770 MEHIERAGVHS----GDSIAVYPPQTLTQEEIDTLEDYTIKLAKGLNIIGLINIQFVIAH 825

Query: 253 LSRKVFWLEINV 264
               V+ LE+N 
Sbjct: 826 DG--VYVLEVNP 835


>gi|306844762|ref|ZP_07477347.1| pyruvate carboxylase [Brucella sp. BO1]
 gi|306274934|gb|EFM56704.1| pyruvate carboxylase [Brucella sp. BO1]
          Length = 1158

 Score = 80.9 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/199 (16%), Positives = 68/199 (34%), Gaps = 15/199 (7%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIK 131
            I +            +K+ ++ +    GVPV P+       MD        I  P ++K
Sbjct: 112 GIVFIGPKPETMRRLGNKVAARNLAIEIGVPVVPATDPLPDDMDEVKKLAAQIGYPLMLK 171

Query: 132 PLKGGSSLGIIVIKKDQSIP----LDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDAS 186
              GG   G+  I+ +  +         ++ +    D++ +E+ V+    +   ++GD  
Sbjct: 172 ASWGGGGRGMRAIRAEADLAREVMEAKREAKAAFGKDEVYLEKLVERARHVEVQILGDTH 231

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISR 245
            +   +            K          PA  +     +E+         A    G   
Sbjct: 232 GNAVHLFERDCSIQRRNQK-----VVERAPAPYLNDAQRRELADYGLKIAHATDYIGAGT 286

Query: 246 SDFLFDPLSRKVFWLEINV 264
            +FL D  + K +++E+N 
Sbjct: 287 VEFLMDADTGKFYFIEVNP 305


>gi|198429082|ref|XP_002125037.1| PREDICTED: similar to carboxylase:pyruvate/acetyl-coa/propionyl-coa
           [Ciona intestinalis]
          Length = 1204

 Score = 80.9 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 40/242 (16%), Positives = 89/242 (36%), Gaps = 20/242 (8%)

Query: 35  QIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSM 91
            +D    +  ++A  K D+  + +H  +G   E            I +            
Sbjct: 113 PVDAYLHIPEIIATAK-DVGVDAIHPGYGFLSERSDFAHACVQAGIKFIGPTPDVVQQMG 171

Query: 92  DKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI----SPPYVIKPLKGGSSLGIIVIKKD 147
           DK+ ++++  + GVPV P       T+D           P + K   GG   G+  + + 
Sbjct: 172 DKVAARKIAIAAGVPVVPGTDEPVTTLDEAKSFVQKYGFPVIFKAAYGGGGRGMRFVNQM 231

Query: 148 QSIP----LDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSY 202
             +       + ++        + IE+Y++G   +   ++GD   ++  +        S 
Sbjct: 232 SELEDNFNRAVSEAEKAFGNGSMFIERYLEGPRHIEVQILGDQLGNMVHLYERD---CSI 288

Query: 203 ELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
           + +Y       + PA  +P+ + + +   A    + +        +FL D   R  +++E
Sbjct: 289 QRRYQ--KVVELAPAFNLPIGLRRILADDALKIAKHVNYENAGTVEFLLDAQGRH-YFIE 345

Query: 262 IN 263
           +N
Sbjct: 346 VN 347


>gi|171060656|ref|YP_001793005.1| acetyl-CoA carboxylase, biotin carboxylase [Leptothrix cholodnii
           SP-6]
 gi|170778101|gb|ACB36240.1| acetyl-CoA carboxylase, biotin carboxylase [Leptothrix cholodnii
           SP-6]
          Length = 451

 Score = 80.9 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 83/222 (37%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H  +G   E+      +E     +      +  L  DK+ +K  +   GVP  P +  
Sbjct: 77  AIHPGYGFLSENANFAERVEKSGFAFIGPTPESIRLMGDKVSAKDAMVKAGVPTVPGVPG 136

Query: 113 ----VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
                ++  +     +  P +IK   GG   G+ V+  + ++   +     ++ +     
Sbjct: 137 ALPEDSKEVIRIAREVGYPVIIKASGGGGGRGMRVVHTEAALLTAVQTTRAEAGAAFGNP 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E++++    +   V+ D   +   +            K          PA  IP  
Sbjct: 197 AVYLEKFLENPRHIEIQVLADTHGNAVWLGERDCSMQRRHQK-----IIEEAPAPGIPRK 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + ++V      A + IG RG    +FLF   + + +++E+N 
Sbjct: 252 VIEKVGERCAAACKKIGYRGAGTFEFLF--ENGEFYFIEMNT 291


>gi|116619994|ref|YP_822150.1| urea amidolyase related protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116223156|gb|ABJ81865.1| urea amidolyase related protein [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 1171

 Score = 80.9 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 40/257 (15%), Positives = 89/257 (34%), Gaps = 32/257 (12%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+        L  I +             K  ++++ +  GVP+ P   +
Sbjct: 77  AIHPGYGFLSENADFAEECTLRGIAFIGPTPAQMRAFGLKHTAREIAAKNGVPLAPGSGL 136

Query: 114 NRFTMDSQ---HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD----QL 166
                ++      I  P ++K   GG  +G+ + + +  +             +     L
Sbjct: 137 LASVEEALMSVERIGYPVMLKSTAGGGGIGMRLCRDESELREGYTAVERLGRANFGAAGL 196

Query: 167 LIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIY 224
            +E++  +   +   + GD   +V  +            +  +       PA  I   + 
Sbjct: 197 YLEKFTANARHIEVQIFGDGMGEVIALGE-----RDCSAQRRNQKVIEETPAPGISPGVR 251

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAY 280
           + +   A    +A+  R     +F++D  + +  +LE+N +     G+T           
Sbjct: 252 ERLFDAALRLGRAVRYRSAGTVEFIYDNDTAQFHFLEVNTRLQVEHGVTE--------EV 303

Query: 281 AGYSFRELLLWMVEDAS 297
            G    +L+ WMV  A+
Sbjct: 304 TGI---DLVEWMVRLAA 317


>gi|297380261|gb|ADI35148.1| acetyl-CoA carboxylase, biotin carboxylase [Helicobacter pylori
           v225d]
          Length = 455

 Score = 80.9 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/225 (16%), Positives = 78/225 (34%), Gaps = 14/225 (6%)

Query: 49  LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
            + D  F   +G   E+     I     + +        AL  DK ++K V+   G+PV 
Sbjct: 84  FEADAIFPG-YGFLSENQNFVEICSHHSLEFIGPSAKVMALMSDKSKAKSVMKEAGMPVI 142

Query: 109 PS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSW 160
                 +   +   +    I  P +IK   GG   G+ V++    +         ++ S 
Sbjct: 143 EGSDGLLKSYQEAEEIADKIGYPVIIKAAAGGGGRGMRVVEDKSKLKNLYLAAETEALSA 202

Query: 161 NHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI 219
                + +E+++     +   ++ D   +V  +          + K             +
Sbjct: 203 FGDGSVYLEKFINKPKHIEVQILADKHGNVIHVGERDCSVQRRQQKLI----EETPAVVL 258

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              + K +   A  A + IG  G    +FL D   +  +++E+N 
Sbjct: 259 EEGVRKRLLETAIKAAKYIGYVGAGTFEFLLDSNMKDFYFMEMNT 303


>gi|222154052|gb|ACM47216.1| plastid carbamoylphosphate synthetase large subunit [Medicago
           truncatula]
          Length = 1167

 Score = 80.9 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 57/279 (20%), Positives = 104/279 (37%), Gaps = 37/279 (13%)

Query: 18  SGKACASALEDAGFKVSQID------------VDRS---------VGLVLAHLKPDLAFN 56
           SG     AL + G++V  I+             DR+         V  VL   +PD    
Sbjct: 104 SGTQACKALREEGYEVILINSNPATIMTDPETADRTYITPMTPELVEQVLESERPDALLP 163

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  V       LE   +    + + A   + D+   KQ + + G+   PS  
Sbjct: 164 TMGGQTALNLAVALAESGALEKYGVELIGAKLEAIKKAEDRELFKQAMKNIGIKTPPSGT 223

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     M   + I  P +++P       G  +    + +        + +  +Q+LIE+
Sbjct: 224 CSTLEECMQIANQIEFPLIVRPAFTLGGTGGGIAYNREDLMEICKAGIAASLTNQVLIEK 283

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            + G  E    VM D + +V  I   ++ D           +S  V PA+ +    Y+ +
Sbjct: 284 SLLGWKEYELEVMRDLADNVVIICSIENIDPMGVHT----GDSITVAPAQTLTDKEYQRL 339

Query: 228 QRLAFLAHQAIG--CRGISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG  C G S   F  +P+  +V  +E+N 
Sbjct: 340 RDYSIAIIREIGVECGG-SNVQFAVNPVDGEVMVIEMNP 377



 Score = 44.0 bits (103), Expect = 0.027,   Method: Composition-based stats.
 Identities = 27/189 (14%), Positives = 69/189 (36%), Gaps = 10/189 (5%)

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---QHLISPPYVIKPLKGGS 137
            +   +  ++ D+ R   ++    +       + R   D+      I  P V++P     
Sbjct: 750 GTSPDSIDVAEDRERFNVMLHELQIEHPKG-GIARSEADALAIAAEIGYPVVVRPSYVLG 808

Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPK 196
              + ++  D+ +   L  +   +    +LI++Y+ D  E+    + D+  +V    + +
Sbjct: 809 GRAMEIVYSDERLVTYLETAVEVDPERPVLIDKYLSDACEIDIDALADSQGNVVIGGIME 868

Query: 197 SDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255
              +  +    S +S   +P + +     + ++       + +   G+    +   P   
Sbjct: 869 ---HIEQAGIHSGDSACSIPTRTVSSSSLETIRSWTEKLAKKLNVVGLMNCQYAITPSGN 925

Query: 256 KVFWLEINV 264
            VF LE N 
Sbjct: 926 -VFLLEANP 933


>gi|108563447|ref|YP_627763.1| biotin carboxylase [Helicobacter pylori HPAG1]
 gi|107837220|gb|ABF85089.1| biotin carboxylase [Helicobacter pylori HPAG1]
          Length = 458

 Score = 80.9 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/225 (16%), Positives = 78/225 (34%), Gaps = 14/225 (6%)

Query: 49  LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
            + D  F   +G   E+     I     + +        AL  DK ++K V+   G+PV 
Sbjct: 87  FEADAIFPG-YGFLSENQNFVEICSHHSLEFIGPSAKVMALMSDKSKAKSVMKEAGMPVI 145

Query: 109 PS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSW 160
                 +   +   +    I  P +IK   GG   G+ V++    +         ++ S 
Sbjct: 146 EGSDGLLKSYQEAEEIADKIGYPVIIKAAAGGGGRGMRVVEDKSKLKNLYLAAETEALSA 205

Query: 161 NHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI 219
                + +E+++     +   ++ D   +V  +          + K             +
Sbjct: 206 FGDGSVYLEKFINKPKHIEVQILADKHGNVIHVGERDCSVQRRQQKLI----EETPAVVL 261

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              + K +   A  A + IG  G    +FL D   +  +++E+N 
Sbjct: 262 EEGVRKRLLETAIKAAKYIGYVGAGTFEFLLDSNMKDFYFMEMNT 306


>gi|254719771|ref|ZP_05181582.1| pyruvate carboxylase [Brucella sp. 83/13]
 gi|265984791|ref|ZP_06097526.1| pyruvate carboxylase [Brucella sp. 83/13]
 gi|306839467|ref|ZP_07472275.1| pyruvate carboxylase [Brucella sp. NF 2653]
 gi|264663383|gb|EEZ33644.1| pyruvate carboxylase [Brucella sp. 83/13]
 gi|306405412|gb|EFM61683.1| pyruvate carboxylase [Brucella sp. NF 2653]
          Length = 1163

 Score = 80.9 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/199 (16%), Positives = 68/199 (34%), Gaps = 15/199 (7%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIK 131
            I +            +K+ ++ +    GVPV P+       MD        I  P ++K
Sbjct: 112 GIVFIGPKPETMRRLGNKVAARNLAIEIGVPVVPATDPLPDDMDEVKKLAAQIGYPLMLK 171

Query: 132 PLKGGSSLGIIVIKKDQSIP----LDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDAS 186
              GG   G+  I+ +  +         ++ +    D++ +E+ V+    +   ++GD  
Sbjct: 172 ASWGGGGRGMRAIRAEADLAREVMEAKREAKAAFGKDEVYLEKLVERARHVEVQILGDTH 231

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISR 245
            +   +            K          PA  +     +E+         A    G   
Sbjct: 232 GNAVHLFERDCSIQRRNQK-----VVERAPAPYLNDAQRRELADYGLKIAHATDYIGAGT 286

Query: 246 SDFLFDPLSRKVFWLEINV 264
            +FL D  + K +++E+N 
Sbjct: 287 VEFLMDADTGKFYFIEVNP 305


>gi|237752895|ref|ZP_04583375.1| acetyl-CoA carboxylase [Helicobacter winghamensis ATCC BAA-430]
 gi|229375162|gb|EEO25253.1| acetyl-CoA carboxylase [Helicobacter winghamensis ATCC BAA-430]
          Length = 476

 Score = 80.9 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/222 (16%), Positives = 84/222 (37%), Gaps = 20/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+ L    ++   + +        A   DK  ++ ++ + G+PV P    
Sbjct: 76  AIHPGYGFLSENALFAKKVKEAGLVWIGPDSEVIAKMGDKNAARNLMIANGIPVVPGTEP 135

Query: 112 ---LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGD 164
              L           I  P ++K   GG  LGI V+ +++ +         ++ ++   +
Sbjct: 136 LNALSLYEIQKIARKIGYPVILKASSGGGGLGIRVVWEEKDLESAFEACKREALTFFKNE 195

Query: 165 QLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+Y+ +   +   ++ D   +V  +            K        + P   +  D
Sbjct: 196 DVFMEKYIQNPRHIEFQILADNYGNVIHLFERDCSIQRRHQKL-----IEIAPCPTMSTD 250

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + + +  +A  A +A         +FL D  +   +++E+N 
Sbjct: 251 LRRRMGSVAVGAARAANYTNAGTVEFLVDDYNN-FYFMEMNT 291


>gi|254504639|ref|ZP_05116790.1| Carbamoyl-phosphate synthase L chain, ATP binding domain protein
           [Labrenzia alexandrii DFL-11]
 gi|222440710|gb|EEE47389.1| Carbamoyl-phosphate synthase L chain, ATP binding domain protein
           [Labrenzia alexandrii DFL-11]
          Length = 664

 Score = 80.9 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 45/227 (19%), Positives = 80/227 (35%), Gaps = 26/227 (11%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      L+   I +      A      K  +K ++   GVPV P    
Sbjct: 77  AVHPGYGFLSENPDFVDALDAAGITFIGPSADAIRAMGLKDAAKALMEKAGVPVVPGY-- 134

Query: 114 NRFTMDS------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS----SSWNHG 163
           +R T D          I  P +IK   GG   G+  +++ +     L  +     +    
Sbjct: 135 HRETQDPGFLQIQAGKIGYPVLIKARAGGGGKGMRKVERAEDFISALKSAQREGEASFGD 194

Query: 164 DQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPL 221
            ++LIE+YV     +   V GD   +               L+          PA  +P 
Sbjct: 195 GRVLIEKYVAKPRHIEIQVFGDNHGNAV-----HLFERDCSLQRRHQKVIEEAPAPDMPE 249

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR----KVFWLEINV 264
           ++   +   A  A +AI   G    +F+ D        + +++E+N 
Sbjct: 250 EMRTAMGEAAVKAAKAINYSGAGTIEFIVDVSEGLRADRFYFMEMNT 296


>gi|187919926|ref|YP_001888957.1| urea carboxylase [Burkholderia phytofirmans PsJN]
 gi|187718364|gb|ACD19587.1| urea carboxylase [Burkholderia phytofirmans PsJN]
          Length = 1203

 Score = 80.9 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/259 (14%), Positives = 89/259 (34%), Gaps = 38/259 (14%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       +   I +             K  ++++  +  V + P   +
Sbjct: 78  AVHPGYGFLSENAAFAQACDDAGIRFIGPTPQHMREFGLKHTARELAQANDVALLPGTGL 137

Query: 114 N---RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP-----LDLLQSSSWNHGDQ 165
                  +     I  P ++K   GG  +G+ + +    +      +  L  +++ +   
Sbjct: 138 LPDVSAALREAESIGYPVMLKSTAGGGGIGMSLCRDAAQLEGVFASVARLGEANFANAG- 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           + +E++V+    +   V GD    V  +           ++  +       PA  +    
Sbjct: 197 VYVEKFVENARHIEVQVFGDGKGGVISLGE-----RDCSVQRRNQKVIEETPAPGLTHAE 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY--- 280
              +   A    QA+  +     +F+FD  +R+ ++LE+N +              +   
Sbjct: 252 RSALHASAVRLAQAVKYKSAGTVEFVFDADTRRFYFLEVNTR----------LQVEHCVT 301

Query: 281 ---AGYSFRELLLWMVEDA 296
               G    +L+ WM+ +A
Sbjct: 302 EEITGI---DLVEWMIREA 317


>gi|317180818|dbj|BAJ58604.1| biotin carboxylase [Helicobacter pylori F32]
          Length = 458

 Score = 80.9 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/225 (16%), Positives = 78/225 (34%), Gaps = 14/225 (6%)

Query: 49  LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
            + D  F   +G   E+     I     + +        AL  DK ++K V+   G+PV 
Sbjct: 87  FEADAIFPG-YGFLSENQNFVEICSHHSLEFIGPSAKVMALMSDKSKAKSVMKEAGMPVI 145

Query: 109 PS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSW 160
                 +   +   +    I  P +IK   GG   G+ V++    +         ++ S 
Sbjct: 146 EGSDGLLKSYQEAEEIADKIGYPVIIKAAAGGGGRGMRVVEDKSKLKNLYLAAETEALSA 205

Query: 161 NHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI 219
                + +E+++     +   ++ D   +V  +          + K             +
Sbjct: 206 FGDGSVYLEKFINKPKHIEVQILADKHGNVIHVGERDCSVQRRQQKLI----EETPAVVL 261

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              + K +   A  A + IG  G    +FL D   +  +++E+N 
Sbjct: 262 EEGVRKRLLETAIKAAKYIGYVGAGTFEFLLDSNMKDFYFMEMNT 306


>gi|226425239|gb|ACO53619.1| biotin carboxylase 4 [Arachis hypogaea]
          Length = 540

 Score = 80.9 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 80/220 (36%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
           +LH  +G   E+ +   +     I +      +  +  DK  ++  + + GVP  P    
Sbjct: 147 MLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRVMGDKSTARDTMKNAGVPTVPGSDG 206

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS----IPLDLLQSSSWNHGDQ 165
            +      +   + I  P +IK   GG   G+ + K+       +     ++++    D 
Sbjct: 207 LLHSTEEAIRLANEIGFPVMIKATAGGGGRGMRLAKEPGEFVKLLQQAKSEAAAAFGNDG 266

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+Y+ +   +   V+ D   +V               K             +  ++ 
Sbjct: 267 VYLEKYIQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLL----EEAPSPALTPELR 322

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K +   A  A  +IG  G+   +FL D      +++E+N 
Sbjct: 323 KAMGDAAVAAAASIGYIGVGTVEFLLDER-GSFYFMEMNT 361


>gi|296270125|ref|YP_003652757.1| carbamoyl-phosphate synthase L chain ATP- binding protein
           [Thermobispora bispora DSM 43833]
 gi|296092912|gb|ADG88864.1| Carbamoyl-phosphate synthase L chain ATP- binding protein
           [Thermobispora bispora DSM 43833]
          Length = 643

 Score = 80.9 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/219 (16%), Positives = 77/219 (35%), Gaps = 15/219 (6%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+           + +      A     DK+R+K  V+  GVPV P    
Sbjct: 72  AIHPGYGFLAENAEFARACAAAGLVFVGPPPEAIEAMGDKIRAKATVARAGVPVVPGGAE 131

Query: 114 NRFTM-DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS----SWNHGDQLLI 168
               + +    I  P ++KP  GG   G+++++    +P  L  +     +      L++
Sbjct: 132 PGDDLTEVADRIGFPVLVKPSAGGGGKGMVLVRSAAELPAALESARRTAIAAFGDGTLMV 191

Query: 169 EQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227
           E++V     +   ++ D   +V  +   +        K             +  +  + +
Sbjct: 192 ERFVPSPRHIEVQILADRHGNVVHLGERECSLQRRHQKII----EEAPSPLLDAEARERI 247

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRK--VFWLEINV 264
              A    +A+G  G    +F+           ++E+N 
Sbjct: 248 GAAAVEVARAVGYAGAGTVEFIVSGREGPLDFAFMEMNT 286


>gi|126740468|ref|ZP_01756155.1| acetyl-CoA carboxylase, biotin carboxylase, putative [Roseobacter
           sp. SK209-2-6]
 gi|126718269|gb|EBA14984.1| acetyl-CoA carboxylase, biotin carboxylase, putative [Roseobacter
           sp. SK209-2-6]
          Length = 655

 Score = 80.9 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 43/250 (17%), Positives = 83/250 (33%), Gaps = 22/250 (8%)

Query: 32  KVSQIDVDRSVGLVLAHLKP-----DLAFNVLHGNFG---EDGLVQAILELLEIPYTHSG 83
           +   I         L   K      D   + +H  +G   E+    +      + +    
Sbjct: 49  QAILIGPGPVGASYLDAEKIVQAALDAGVDAVHPGYGFLSENADFASACAAAGLIFIGPR 108

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSL 139
             A AL  +K  +K  +   GVP  P         ++       I  P +IK   GG   
Sbjct: 109 PDAIALMGNKAAAKGKMLQAGVPCVPGYEGAEQASEALKTQAARIGYPVMIKAAAGGGGR 168

Query: 140 GIIVIKKDQS----IPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAV 194
           G+ ++  +      + L   ++ S    D++++E+ V +   +   ++ D    V  +  
Sbjct: 169 GMRLVSSEADFTSSLELAKSEALSAFGSDEMILERAVQNPRHVEIQILADVHGHVIHLGE 228

Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
                     K             +   +   + + A  A +AIG  G    +FL D   
Sbjct: 229 RDCSVQRRHQK----VVEEAPSPALDPALRARMGKAAVEAARAIGYLGAGTVEFLLDES- 283

Query: 255 RKVFWLEINV 264
              ++LE+N 
Sbjct: 284 GDFYFLEMNT 293


>gi|18397283|ref|NP_564338.1| CARB (CARBAMOYL PHOSPHATE SYNTHETASE B); ATP binding /
           carbamoyl-phosphate synthase/ catalytic [Arabidopsis
           thaliana]
 gi|9972356|gb|AAG10606.1|AC008030_6 carbamoyl phosphate synthetase large chain (carB) [Arabidopsis
           thaliana]
 gi|14194125|gb|AAK56257.1|AF367268_1 At1g29900/F1N18_6 [Arabidopsis thaliana]
 gi|1477480|gb|AAB67843.1| carbamoyl phosphate synthetase large chain [Arabidopsis thaliana]
 gi|22137066|gb|AAM91378.1| At1g29900/F1N18_6 [Arabidopsis thaliana]
 gi|332193027|gb|AEE31148.1| carbamoyl phosphate synthetase B [Arabidopsis thaliana]
          Length = 1187

 Score = 80.9 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 52/280 (18%), Positives = 101/280 (36%), Gaps = 38/280 (13%)

Query: 18  SGKACASALEDAGFKVSQI---------DVDRS------------VGLVLAHLKPDLAFN 56
           SG     AL + G++V  I         D + +            V  V+   +PD    
Sbjct: 120 SGTQACKALREEGYEVILINSNPATIMTDPETANRTYIAPMTPELVEQVIEKERPDALLP 179

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G    +  V       LE   +    + + A   + D+   K  + + G+   PS  
Sbjct: 180 TMGGQTALNLAVALAESGALEKYGVELIGAKLGAIKKAEDRELFKDAMKNIGLKTPPSGI 239

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
              ++     ++ +   P +I+P       G  +    +          + +   Q+L+E
Sbjct: 240 GTTLDECFDIAEKIGEFPLIIRPAFTLGGTGGGIAYNKEEFESICKSGLAASATSQVLVE 299

Query: 170 QYVDG-IELTCGVMGDASLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPAK-IPLDIYKE 226
           + + G  E    VM D + +V  I   ++ D           +S  V PA+ +    Y+ 
Sbjct: 300 KSLLGWKEYELEVMRDLADNVVIICSIENIDPMGVHT----GDSITVAPAQTLTDREYQR 355

Query: 227 VQRLAFLAHQAIG--CRGISRSDFLFDPLSRKVFWLEINV 264
           ++  +    + IG  C G S   F  +P+  +V  +E+N 
Sbjct: 356 LRDYSIAIIREIGVECGG-SNVQFAVNPVDGEVMIIEMNP 394



 Score = 47.0 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 26/188 (13%), Positives = 67/188 (35%), Gaps = 8/188 (4%)

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTMDSQHLISPPYVIKPLKGGSS 138
            +   +   + D+ R   ++    +      +       +     +  P V++P      
Sbjct: 766 GTSPDSIDAAEDRERFNAILDELKIEQPKGGIAKSEADALAIAKEVGYPVVVRPSYVLGG 825

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKS 197
             + ++  D  +   L  +   +    +L+++Y+ D IE+    + D+  +V    + + 
Sbjct: 826 RAMEIVYDDSRLITYLENAVQVDPERPVLVDKYLSDAIEIDVDTLTDSYGNVVIGGIME- 884

Query: 198 DFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256
             +  +    S +S  +LP + IP    + ++       + +   G+    +        
Sbjct: 885 --HIEQAGVHSGDSACMLPTQTIPASCLQTIRTWTTKLAKKLNVCGLMNCQYAITTS-GD 941

Query: 257 VFWLEINV 264
           VF LE N 
Sbjct: 942 VFLLEANP 949


>gi|66807109|ref|XP_637277.1| methylcrotonyl-CoA carboxylase [Dictyostelium discoideum AX4]
 gi|74853044|sp|Q54KE6|MCCA_DICDI RecName: Full=Methylcrotonoyl-CoA carboxylase subunit alpha,
           mitochondrial; Short=MCCase subunit alpha; AltName:
           Full=3-methylcrotonyl-CoA carboxylase 1; AltName:
           Full=3-methylcrotonyl-CoA carboxylase biotin-containing
           subunit; AltName: Full=3-methylcrotonyl-CoA:carbon
           dioxide ligase subunit alpha; Flags: Precursor
 gi|60465677|gb|EAL63756.1| methylcrotonyl-CoA carboxylase [Dictyostelium discoideum AX4]
          Length = 699

 Score = 80.9 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 82/221 (37%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+     + E   I +      A      K  SK ++   GVP  P    
Sbjct: 105 AIHPGYGFLSENSDFADLCEREGIIFIGPPSDAIKAMGSKSASKDIMIKAGVPTIPGYHG 164

Query: 114 NRFTM----DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
              +M         I  P +IK + GG   G+ ++++++ +   +     ++++     +
Sbjct: 165 EDQSMSVLKSEAAKIGYPVLIKAVMGGGGKGMRIVEREEDLEDGVESSKREATASFGDSR 224

Query: 166 LLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           +L+E+Y V    +   V  D   +               ++          PA  +  ++
Sbjct: 225 VLVEKYLVHPRHVEIQVFADRHGNCV-----HLFERDCSVQRRHQKIIEEAPAPHLSEEL 279

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            K++   A  A +A+G  G    +F+        F++E+N 
Sbjct: 280 RKKMGDAAVAAAKAVGYVGAGTVEFILSA-DNSFFFMEMNT 319


>gi|242373490|ref|ZP_04819064.1| carbamoyl phosphate synthase large subunit [Staphylococcus
           epidermidis M23864:W1]
 gi|242348853|gb|EES40455.1| carbamoyl phosphate synthase large subunit [Staphylococcus
           epidermidis M23864:W1]
          Length = 1057

 Score = 80.9 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 53/315 (16%), Positives = 119/315 (37%), Gaps = 39/315 (12%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQID---------------------VDRSVGLV 45
           G ++E + +   G     AL++ G++V  ++                         +  +
Sbjct: 21  GQAAEFDYA---GTQACLALKEEGYRVILVNSNPATIMTDKEIADKVYIEPLTHDFIARI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   +PD     L G  G +  +Q     +L    +    + + +   + D+   + +++
Sbjct: 78  IRKEQPDALLPTLGGQTGLNMAIQLHDSGVLAANNVKLLGTELESIQQAEDREMFRTLMN 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
              VPV  S +VN      + +  +  P +++P       G  +   D  +   +     
Sbjct: 138 DLNVPVPESDIVNTVEQAFEFKEQVGYPLIVRPAFTMGGTGGGICYNDADLKEVVSNGLH 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
           ++   Q LIE+ + G  E+   VM D + +   I V   +     +   + +S  V P++
Sbjct: 198 YSPATQCLIEKSIAGFKEIEYEVMRDKNDNA--IVVCNMENID-PVGIHTGDSIVVAPSQ 254

Query: 219 -IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
            +    Y+ ++ ++    +A+G  G        DP S   + +E+N  P ++  S     
Sbjct: 255 TLSDVEYQMLRDVSLKVIRALGIEGGCNVQLALDPHSLNYYIIEVN--PRVSRSS--ALA 310

Query: 278 AAYAGYSFRELLLWM 292
           +   GY   +L   +
Sbjct: 311 SKATGYPIAKLAAKI 325



 Score = 66.3 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 24/192 (12%), Positives = 69/192 (35%), Gaps = 9/192 (4%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVC--PSILVNRFTMDSQHLISPPYVIKPL 133
            +    + +     + D+   + ++    VP     +    +  +++   I  P V++P 
Sbjct: 650 GVQILGTSLEDLNRAEDRKEFEALLRQIYVPQPQGKTSTSPKEALENAREIGYPVVVRPS 709

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
                  + ++  DQ +   + Q+   +    +L+++Y+ G E+    + D    +    
Sbjct: 710 YVLGGRAMEIVDNDQELENYMTQAVKASPEHPVLVDRYLTGKEIEVDAICDGDTVIIPGI 769

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
           +   +           +S  V P + +  +  + ++       + +   G+    F+   
Sbjct: 770 MEHIERAGVHS----GDSIAVYPPQTLTQEEIETLEDYTIKLAKGLNIIGLINIQFVIAH 825

Query: 253 LSRKVFWLEINV 264
               V+ LE+N 
Sbjct: 826 DG--VYVLEVNP 835


>gi|260588555|ref|ZP_05854468.1| carbamoyl-phosphate synthase, large subunit [Blautia hansenii DSM
           20583]
 gi|260541030|gb|EEX21599.1| carbamoyl-phosphate synthase, large subunit [Blautia hansenii DSM
           20583]
          Length = 1072

 Score = 80.9 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 49/278 (17%), Positives = 98/278 (35%), Gaps = 36/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+++  +              DV          +  ++A  +PD    
Sbjct: 29  SGTQACKALRNLGYEIVLVNSNPATIMTDPSTADVTYIEPLNVDRLTEIIAKERPDALLP 88

Query: 57  VLHGNFG----EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G  G    E+     +L+   +      + A +   D++  K  +   G+ +  S  
Sbjct: 89  NLGGQSGLNLCEELYHAGVLDKYNVEVIGVQVDAISRGEDRIEFKNAMDKLGIEMAKSAP 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     +  P VI+P       G  ++  ++ +     +  + +  +Q+L+E+
Sbjct: 149 AYSVEEALKIAEELGYPCVIRPAYTMGGTGGGIVYNEEELKKVAARGIAASMVNQILVEE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK---IPLDIYKE 226
            V G  EL   V+ D +     I   ++                   A    I  D+   
Sbjct: 209 SVIGWEELEVEVVRDKAGKKISICFIENI-----DPMGVHTGDSFCSAPMLTISQDLQDR 263

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +++ A    ++IG  G +   F  DP S ++  +EIN 
Sbjct: 264 LEKQAHAIVESIGVIGGTNVQFAHDPKSDRIIIIEINP 301



 Score = 50.5 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 30/201 (14%), Positives = 75/201 (37%), Gaps = 10/201 (4%)

Query: 68  VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-ILVN-RFTMDSQHLIS 125
           + A LE        +      ++ D+     ++    +P+  S + VN    ++  H I 
Sbjct: 643 IAAELEKRGAHILGTSPAVIDMAEDRDLFNAMMHKLEIPMPESGMAVNVEEALEIAHRIG 702

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGD 184
            P +++P       G+ V+  D  +   +  +        +L+++++ + +E     + D
Sbjct: 703 YPMMVRPSYVLGGRGMEVVYDDNMLRDYMAAAIDVTPERPILMDKFLQNALECETDAISD 762

Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGI 243
            +       +   +    +    S +S  V+P  +I     + +++        +G  G+
Sbjct: 763 GTHAFVPTVMQHIE----QAGIHSGDSACVIPSVEISEKNKELIRKYTTAIACEMGVVGL 818

Query: 244 SRSDFLFDPLSRKVFWLEINV 264
              +  +     KV+ LE N 
Sbjct: 819 --MNMQYAICEDKVYVLEANP 837


>gi|325003097|ref|ZP_08124209.1| carbamoyl-phosphate synthase L chain ATP- binding protein
           [Pseudonocardia sp. P1]
          Length = 1876

 Score = 80.9 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 41/214 (19%), Positives = 78/214 (36%), Gaps = 13/214 (6%)

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVNR 115
           G   E      +   L I +            DK+ SKQ+  S GVP+ P     +    
Sbjct: 95  GFVSEKADFAELCARLGITFVGPSAEVMRRLGDKIASKQLAESVGVPMAPWSGGPVADLD 154

Query: 116 FTMDSQHLISPPYVIKPLKGGSSLGIIVI----KKDQSIPLDLLQSSSWNHGDQLLIEQY 171
               +   +  P ++K   GG   GI  +      D++      ++S       + +E+ 
Sbjct: 155 AARKAAETVGYPLMVKATAGGGGRGIRFVAGPEHLDEAFERAASEASRTAGDATVFLERA 214

Query: 172 VD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
           V  G  +   V+ DA+ DV  + V          K    +++      +  +  + ++  
Sbjct: 215 VAGGRHVEVQVVADATGDVWTLGVRDCSVQRRNQKVIEESASTA----LDAEQERLLRDS 270

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           A    +A G       +FL+ P  + + +LE+N 
Sbjct: 271 AADLARAAGYVNAGTVEFLYQPEEKLLSFLEVNT 304


>gi|229162881|ref|ZP_04290838.1| Pyruvate carboxylase [Bacillus cereus R309803]
 gi|228620763|gb|EEK77632.1| Pyruvate carboxylase [Bacillus cereus R309803]
          Length = 1148

 Score = 80.9 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 32/243 (13%), Positives = 85/243 (34%), Gaps = 21/243 (8%)

Query: 35  QIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSM 91
            ID    +  ++   K +   + +H  +G   E+       E   I +         +  
Sbjct: 62  PIDAYLDIEGIIEIAKSNHV-DAIHPGYGFLSENIQFAKRCEEEGIIFIGPKSKHLDMFG 120

Query: 92  DKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147
           DK++++       +PV P     +       +       P +IK   GG   G+ +++  
Sbjct: 121 DKVKARTQAQLAKIPVIPGSDGPVNSLEEVAEFAEKYDYPIIIKASLGGGGRGMRIVRTS 180

Query: 148 QSIPL----DLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSY 202
           + +         ++ +    D++ +E++V+    +   ++ D   +V  +          
Sbjct: 181 EELRESYNRAKSEAKAAFGNDEVYVEKFVEKPKHIEVQILADEEGNVVHLYE-----RDC 235

Query: 203 ELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
            ++        + P   +P D+ + +   A    + +        +FL      + +++E
Sbjct: 236 SVQRRHQKVVEIAPSVSLPDDLRQRICEAAVKLTKNVNYLNAGTVEFLV--KGDEFYFIE 293

Query: 262 INV 264
           +N 
Sbjct: 294 VNP 296


>gi|217032598|ref|ZP_03438087.1| hypothetical protein HPB128_159g24 [Helicobacter pylori B128]
 gi|298735914|ref|YP_003728439.1| biotin carboxylase [Helicobacter pylori B8]
 gi|216945734|gb|EEC24359.1| hypothetical protein HPB128_159g24 [Helicobacter pylori B128]
 gi|298355103|emb|CBI65975.1| biotin carboxylase [Helicobacter pylori B8]
          Length = 458

 Score = 80.9 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/225 (16%), Positives = 78/225 (34%), Gaps = 14/225 (6%)

Query: 49  LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
            + D  F   +G   E+     I     + +        AL  DK ++K V+   G+PV 
Sbjct: 87  FEADAIFPG-YGFLSENQNFVEICSHHSLEFIGPSAKVMALMSDKSKAKSVMKEAGMPVI 145

Query: 109 PS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSW 160
                 +   +   +    I  P +IK   GG   G+ V++    +         ++ S 
Sbjct: 146 EGSEGLLKSYQEAEEIADKIGYPVIIKAAAGGGGRGMRVVEDKSKLKNLYLAAETEALSA 205

Query: 161 NHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI 219
                + +E+++     +   ++ D   +V  +          + K             +
Sbjct: 206 FGDGSVYLEKFINKPKHIEVQILADKHGNVIHVGERDCSVQRRQQKLI----EETPAVVL 261

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              + K +   A  A + IG  G    +FL D   +  +++E+N 
Sbjct: 262 EEGVRKRLLETAIKAAKYIGYVGAGTFEFLLDSNMKDFYFMEMNT 306


>gi|311068003|ref|YP_003972926.1| pyruvate carboxylase [Bacillus atrophaeus 1942]
 gi|310868520|gb|ADP31995.1| pyruvate carboxylase [Bacillus atrophaeus 1942]
          Length = 1149

 Score = 80.9 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 35/243 (14%), Positives = 91/243 (37%), Gaps = 21/243 (8%)

Query: 35  QIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSM 91
            ID    +  ++   K +   + +H  +G   E+       E   I +         +  
Sbjct: 62  PIDAYLDIEGIIEIAKRNQV-DAIHPGYGFLSENIQFAKRCEEEGIVFIGPTSEHLNMFG 120

Query: 92  DKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI----SPPYVIKPLKGGSSLGIIVIKKD 147
           DK+++++     G+PV P       T+++          P++IK   GG   G+ +++ +
Sbjct: 121 DKVKAREQAEKAGIPVIPGSDGPAETLEAVEQFGQAHGYPFIIKASLGGGGRGMRIVRSE 180

Query: 148 QSIPLDLL----QSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSY 202
             +         ++ +    D++ +E+ ++    +   V+GD + +V  +          
Sbjct: 181 NEVKEAFERAKSEAKAAFGNDEVYVEKLIENPKHIEVQVIGDKNGNVVHLYE-----RDC 235

Query: 203 ELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
            ++        V P   +  ++  ++   A    + +        +FL    + + F++E
Sbjct: 236 SVQRRHQKVIEVAPSVSLSNELRDQICEAAVALAKNVQYINAGTVEFLV--ANDEFFFIE 293

Query: 262 INV 264
           +N 
Sbjct: 294 VNP 296


>gi|289548041|ref|YP_003473029.1| acetyl-CoA carboxylase, biotin carboxylase [Thermocrinis albus DSM
           14484]
 gi|289181658|gb|ADC88902.1| acetyl-CoA carboxylase, biotin carboxylase [Thermocrinis albus DSM
           14484]
          Length = 472

 Score = 80.9 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 47/250 (18%), Positives = 90/250 (36%), Gaps = 23/250 (9%)

Query: 32  KVSQIDVDRSVGLVLAHLKPDLAF----NVLHGNFG---EDGLVQAILELLEIPYTHSGI 84
           +   I V+     + A    DLA     + +H  +G   E+     + E   I +     
Sbjct: 47  EAYMIGVNPLDTYLNAERIVDLALEVGADAIHPGYGFLAENEHFARLCEERGITFIGPHW 106

Query: 85  LASALSMDKMRSKQVVSSCGVPVCP---SILVNRFTMDS-QHLISPPYVIKPLKGGSSLG 140
               L  DK RSK+VV   G+P  P    +L +          +  P ++K   GG   G
Sbjct: 107 KVIELMGDKARSKEVVKKAGLPTVPGSDGVLKDEQEAKQIAREVGYPVLLKASAGGGGRG 166

Query: 141 IIVIKKDQSI----PLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVP 195
           I + + ++ +         ++        LL+E+Y++    +   V+GD    V  +   
Sbjct: 167 IRICRNEEELLRNYENAYNEALKAFGRGDLLLEKYIENPKHIEFQVLGDKYGHVIHLGER 226

Query: 196 KSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
                    K        + P+  +  +  +    L   A + IG       +F+ D   
Sbjct: 227 DCSIQRRNQKL-----VEIAPSLLLTPEKREYYGELVVKAAKEIGYYNAGTMEFIADEEG 281

Query: 255 RKVFWLEINV 264
             ++++E+N 
Sbjct: 282 N-LYFIEMNT 290


>gi|89256868|ref|YP_514230.1| Acetyl-CoA carboxylase, biotin carboxylase subunit [Francisella
           tularensis subsp. holarctica LVS]
 gi|115315247|ref|YP_763970.1| acetyl-CoA carboxylase biotin carboxylase subunit [Francisella
           tularensis subsp. holarctica OSU18]
 gi|156503043|ref|YP_001429108.1| acetyl-CoA carboxylase, biotin carboxylase [Francisella tularensis
           subsp. holarctica FTNF002-00]
 gi|167009238|ref|ZP_02274169.1| acetyl-CoA carboxylase, biotin carboxylase [Francisella tularensis
           subsp. holarctica FSC200]
 gi|254368144|ref|ZP_04984164.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Francisella
           tularensis subsp. holarctica 257]
 gi|89144699|emb|CAJ80030.1| Acetyl-CoA carboxylase, biotin carboxylase subunit [Francisella
           tularensis subsp. holarctica LVS]
 gi|115130146|gb|ABI83333.1| acetyl-CoA carboxylase biotin carboxylase subunit [Francisella
           tularensis subsp. holarctica OSU18]
 gi|134253954|gb|EBA53048.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Francisella
           tularensis subsp. holarctica 257]
 gi|156253646|gb|ABU62152.1| acetyl-CoA carboxylase, biotin carboxylase [Francisella tularensis
           subsp. holarctica FTNF002-00]
          Length = 451

 Score = 80.9 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/222 (15%), Positives = 80/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +      +  +  DK+ + + +   GVP  P    
Sbjct: 77  AIHPGYGFLSENAKFAKAVEESGFIFIGPRAESIEIMGDKVEAIRYMKKAGVPCVPGSGG 136

Query: 112 ---LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GD 164
                 +  ++    I  P +IK   GG   G+ +++K + +   +  + S        D
Sbjct: 137 PLGSDEKKNLEIAEKIGYPVIIKAAGGGGGRGMSIVRKKKDLISAISITKSEARIAFNND 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLD 222
            + +E++++    +   V GD   +   +            +          PA  +  +
Sbjct: 197 MVYMEKFLENPRHIEIQVFGDGEGNAVYL-----FERDCSTQRRHQKVIEEAPAIGLSDE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             K +      A + +  RG    +FL+   + + +++E+N 
Sbjct: 252 ERKRIGEQCVSACKILKYRGAGTFEFLY--ENGEFYFIEMNT 291


>gi|229086511|ref|ZP_04218683.1| Pyruvate carboxylase [Bacillus cereus Rock3-44]
 gi|228696828|gb|EEL49641.1| Pyruvate carboxylase [Bacillus cereus Rock3-44]
          Length = 1148

 Score = 80.9 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/243 (12%), Positives = 82/243 (33%), Gaps = 21/243 (8%)

Query: 35  QIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSM 91
            ID    +  ++   K +   + +H  +G   E+       E   I +         +  
Sbjct: 62  PIDAYLDIEGIIEIAKSNHV-DAIHPGYGFLSENIQFARRCEEEGIIFIGPKSKHLDMFG 120

Query: 92  DKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147
           DK++++       +PV P     +       +       P +IK   GG   G+ +++  
Sbjct: 121 DKVKARTQAQLANIPVIPGSDGPVNSIEEVEEFAEKYDYPIIIKASLGGGGRGMRIVRNG 180

Query: 148 QSIPL----DLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSY 202
             +         ++ +    D++ +E++V+    +   ++ D   +V  +          
Sbjct: 181 DELQESYDRAKSEAKAAFGNDEVYVEKFVEKPKHIEVQILADEEGNVVHLYE-----RDC 235

Query: 203 ELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
            ++        + P   +P ++   +   A    + +        +FL        +++E
Sbjct: 236 SVQRRHQKVVEIAPSVSLPDELRHRICEAAVQLTKNVNYLNAGTVEFLV--KGNDFYFIE 293

Query: 262 INV 264
           +N 
Sbjct: 294 VNP 296


>gi|261419276|ref|YP_003252958.1| pyruvate carboxylase [Geobacillus sp. Y412MC61]
 gi|319766092|ref|YP_004131593.1| pyruvate carboxylase [Geobacillus sp. Y412MC52]
 gi|261375733|gb|ACX78476.1| pyruvate carboxylase [Geobacillus sp. Y412MC61]
 gi|317110958|gb|ADU93450.1| pyruvate carboxylase [Geobacillus sp. Y412MC52]
          Length = 1147

 Score = 80.9 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 28/222 (12%), Positives = 79/222 (35%), Gaps = 22/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+           I +         +  DK++++      G+PV P    
Sbjct: 82  AIHPGYGFLSENIQFAKRCREEGIIFIGPNEEHLDMFGDKVKARHAAMKAGIPVIPGSDG 141

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS-----SSWNHGD 164
            +      +        P +IK   GG   G+ +++    +     ++     +++   D
Sbjct: 142 PVGGLEDVVRFAETHGYPIIIKAALGGGGRGMRIVRSKSEVKEAFERAKSEAKAAFGSDD 201

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLD 222
            + +E+ ++    +   ++GD   ++  +           ++        V P   +  +
Sbjct: 202 -VYVEKLIEKPKHIEVQILGDHEGNIVHLYE-----RDCSVQRRHQKVVEVAPSVSLSDE 255

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + + +  +A    +++G       +FL      + +++E+N 
Sbjct: 256 LRERICEVAVRLMRSVGYVNAGTVEFLV--SGDEFYFIEVNP 295


>gi|71905716|ref|YP_283303.1| allophanate hydrolase subunit 2 [Dechloromonas aromatica RCB]
 gi|71845337|gb|AAZ44833.1| Allophanate hydrolase subunit 2 [Dechloromonas aromatica RCB]
          Length = 1201

 Score = 80.9 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/220 (15%), Positives = 73/220 (33%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       E   I +             K  ++++  + GVP+ P   +
Sbjct: 77  AIHPGYGFLSENPDFSDACEAAGIAFIGPTKAQMLAFGLKHTARELAEAAGVPLLPGSGL 136

Query: 114 NR---FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQL 166
                        I  P ++K   GG  +G+ +I  +  +          + +      +
Sbjct: 137 LSDVGHARGEAARIGYPVMLKSTAGGGGIGMRLIWAEDELAEAFASVDRLARANFKEAGI 196

Query: 167 LIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIY 224
            +E+YV+    +   V GD    V  +           ++  +       PA  +     
Sbjct: 197 YLEKYVESARHIEVQVFGDGVGKVLALGE-----RDCSVQRRNQKVIEETPAPGLNDAQR 251

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +   A     ++  R     +F+ D  +   ++LE+N 
Sbjct: 252 QGLAETAVRLMASVSYRSAGTVEFVMDAATGAFYFLEVNT 291


>gi|312875938|ref|ZP_07735928.1| carbamoyl-phosphate synthase, large subunit [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|311797419|gb|EFR13758.1| carbamoyl-phosphate synthase, large subunit [Caldicellulosiruptor
           lactoaceticus 6A]
          Length = 1075

 Score = 80.9 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 54/289 (18%), Positives = 105/289 (36%), Gaps = 39/289 (13%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQID-------VDRS--------------VGLV 45
           G ++E + S   G     AL++ G +V  I+        D++              +  +
Sbjct: 21  GQAAEFDYS---GSQACKALKEEGIEVILINSNPATIMTDKTMADSIYIEPITCEIIEKI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   + D     L G  G +  V+     IL+   +    + I A   + D+   KQ++ 
Sbjct: 78  IQKERVDAILPTLGGQTGLNTAVELYKSGILDKYNVKVIGTNIEAIEFAEDRQLFKQLMI 137

Query: 102 SCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G PV PS +VN     +     I  P +I+P       G  +   ++       +  S
Sbjct: 138 KIGEPVVPSEVVNCVEDGLAFAKKIGFPVIIRPAYTLGGTGGGIANNEEEFVEIARRGLS 197

Query: 160 WNHGDQLLIEQYVDG---IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216
           ++   Q+L+E+ + G   IE       +  L              +     + +S  V P
Sbjct: 198 YSPVHQILVEKSIKGWKEIEYEVMRDSNGCLITVCNMENIDPVGIH-----TGDSIVVAP 252

Query: 217 AK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           ++ +    Y+ ++  A     A+   G     F  +P S +   +E+N 
Sbjct: 253 SQTLSDKEYQMLRSSALKIIDALKIEGGCNVQFALNPDSFEYAVIEVNP 301



 Score = 74.4 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 52/306 (16%), Positives = 111/306 (36%), Gaps = 39/306 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLV 68
           S  +  + L   G K   I         D D S  L    L  +   NV+     E  +V
Sbjct: 578 SVHSVYT-LSKLGIKSVIINNNPETVSTDFDTSDMLFFEPLTKEDVLNVIETVRAEGVIV 636

Query: 69  Q----------AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI--LVNRF 116
           Q            L    I    +      ++ D+ R  ++++   +   P       + 
Sbjct: 637 QFGGQTAIKLSQQLAKEGIKIFGTSAEGIDIAEDRERFDKILNKLNIKRPPGYTCYTLQE 696

Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
            +   + +  P +++P       G+ +   D  I   L  + + N    +LI++Y+ G E
Sbjct: 697 ALRIANSLGYPVLVRPSYVLGGQGMKIAFDDDDIVEMLSYAKNLNSHP-ILIDKYIVGKE 755

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAH 235
           +    + D      +I +P    +       S +S  + PA+ I   I +++        
Sbjct: 756 IEVDAISDGE----DILIPGIMEHIERAGVHSGDSISLYPARNISKYIEEKIVEYTLKIA 811

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEMAAYA----GYSFR 286
           + + C+G+    F+    + +++ +E+N       P ++ V+  P +        GY  +
Sbjct: 812 RELECKGLMNVQFIV--QNEELYVIEVNPRGSRTVPFLSKVTGVPMVELATMVSLGYKLK 869

Query: 287 ELLLWM 292
           +L+  +
Sbjct: 870 DLVNTV 875


>gi|308388180|pdb|3OUZ|A Chain A, Crystal Structure Of Biotin Carboxylase-Adp Complex From
           Campylobacter Jejuni
 gi|308388181|pdb|3OUZ|B Chain B, Crystal Structure Of Biotin Carboxylase-Adp Complex From
           Campylobacter Jejuni
 gi|309320686|pdb|3OUU|A Chain A, Crystal Structure Of Biotin Carboxylase-Beta-Gamma-Atp
           Complex From Campylobacter Jejuni
 gi|309320687|pdb|3OUU|B Chain B, Crystal Structure Of Biotin Carboxylase-Beta-Gamma-Atp
           Complex From Campylobacter Jejuni
          Length = 446

 Score = 80.9 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 42/215 (19%), Positives = 73/215 (33%), Gaps = 14/215 (6%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVN 114
           +G   E+     I     I +    + A  L  DK ++KQV    GVPV P     +   
Sbjct: 86  YGFLSENQNFVEICAKHNIKFIGPSVEAXNLXSDKSKAKQVXQRAGVPVIPGSDGALAGA 145

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQLLIEQ 170
                    I  P ++K   GG   G  V++ ++ +      + S             E+
Sbjct: 146 EAAKKLAKEIGYPVILKAAAGGGGRGXRVVENEKDLEKAYWSAESEAXTAFGDGTXYXEK 205

Query: 171 YV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           Y+ +   +   V+GD+  +V  +            K             +       +  
Sbjct: 206 YIQNPRHIEVQVIGDSFGNVIHVGERDCSXQRRHQK----LIEESPAILLDEKTRTRLHE 261

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            A  A +AIG  G    +FL D  +   +++E N 
Sbjct: 262 TAIKAAKAIGYEGAGTFEFLVDK-NLDFYFIEXNT 295


>gi|307710560|ref|ZP_07646996.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus mitis
           SK564]
 gi|307618713|gb|EFN97853.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus mitis
           SK564]
          Length = 455

 Score = 80.9 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 41/220 (18%), Positives = 78/220 (35%), Gaps = 16/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  FG   E+     + E + I +      A  +  DK+ ++  +   GVPV P    
Sbjct: 77  AIHPGFGFLSENSKFATMCEEVGIKFIGPSGHAMDMMGDKINARAQMIKAGVPVIPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
            +  +   +     I  P ++K   GG   GI  ++K + +      +SS          
Sbjct: 137 EVHNSEEALIVAEKIGYPVMLKASAGGGGKGIRKVEKPEELVSAFETASSEAKANYGNGA 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+ +     +   ++GD    V  +            K             I   + 
Sbjct: 197 MYIERVIYPARHIEVQILGDEHGHVIHLGERDCSLQRNNQKVL----EESPSIAIGKTLR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            E+   A  A +++G       +FL D  S   +++E+N 
Sbjct: 253 NEIGSAAVRAAESVGYENAGTIEFLLDEASSNFYFMEMNT 292


>gi|173122|gb|AAC41643.1| urea amidolyase [Saccharomyces cerevisiae]
          Length = 1835

 Score = 80.9 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 28/214 (13%), Positives = 73/214 (34%), Gaps = 12/214 (5%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
           +G   E+           I +             K  ++Q+    GVP+ P  L+     
Sbjct: 713 YGFLSENADFSDACTSAGITFVGPSGDIIRGLGLKHSARQIAQKAGVPLVPGSLLITSVE 772

Query: 119 DSQHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQLLIEQY 171
           +++ +   +  P ++K   GG  +G+  +  ++ I         Q  ++     + ++++
Sbjct: 773 EAKKVAAELEYPVMVKSTAGGGGIGLQKVDSEEDIEHIFETVKHQGETFFGDAGVFLKRF 832

Query: 172 VD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
           ++    +   +MGD       +            K             +P      +++ 
Sbjct: 833 IENARHVEVQLMGDGFGKAIALGERDCSLQRRNQK----VIEETPAPNLPEKTRLALRKA 888

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           A      +  +     +F++D    + ++LE+N 
Sbjct: 889 AESLGSLLNYKCAGTVEFIYDEKKDEFYFLEVNT 922


>gi|56419614|ref|YP_146932.1| pyruvate carboxylase [Geobacillus kaustophilus HTA426]
 gi|56379456|dbj|BAD75364.1| pyruvate carboxylase [Geobacillus kaustophilus HTA426]
          Length = 1147

 Score = 80.9 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 28/222 (12%), Positives = 78/222 (35%), Gaps = 22/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+           I +         +  DK++++      G+PV P    
Sbjct: 82  AIHPGYGFLSENIQFAKRCREEGIIFIGPNEEHLDMFGDKVKARHAAMKAGIPVIPGSDG 141

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS-----SSWNHGD 164
            +      +        P +IK   GG   G+ +++    +     ++     +++   D
Sbjct: 142 PVGGLEDVVRFAETHGYPIIIKAALGGGGRGMRIVRSKSEVKEAFERAKSEAKAAFGSDD 201

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLD 222
            + +E+ ++    +   ++GD   ++  +           ++        V P   +  +
Sbjct: 202 -VYVEKLIEKPKHIEVQILGDHEGNIVHLYE-----RDCSVQRRHQKVVEVAPSVSLSDE 255

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + + +   A    +++G       +FL      + +++E+N 
Sbjct: 256 LRERICEAAVRLMRSVGYVNAGTVEFLV--SGDEFYFIEVNP 295


>gi|168005736|ref|XP_001755566.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162693273|gb|EDQ79626.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 497

 Score = 80.9 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 78/220 (35%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
           +LH  +G   E+     + +   + +      +  +  DK  +++ +   GVP  P    
Sbjct: 120 MLHPGYGFLAENATFVDMCKDHGLNFIGPNSDSIRVMGDKATARETMKKAGVPTVPGSEG 179

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS----IPLDLLQSSSWNHGDQ 165
            +      +   H I  P +IK   GG   G+ +  +       +     ++ +    D 
Sbjct: 180 LVQSTEEAVRLAHEIGFPVMIKATAGGGGRGMRLANEPGEFVKLLQQARSEAGAAFGNDG 239

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+Y+ +   +   V+ D   +V               K             +  ++ 
Sbjct: 240 VYLERYIQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLL----EEAPSPALTPELR 295

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K +   A  A  +IG  G+   +FL D      +++E+N 
Sbjct: 296 KAMGDAAVAAAASIGYIGVGTVEFLLDE-GGNFYFMEMNT 334


>gi|187932055|ref|YP_001892040.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Francisella
           tularensis subsp. mediasiatica FSC147]
 gi|187712964|gb|ACD31261.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Francisella
           tularensis subsp. mediasiatica FSC147]
          Length = 451

 Score = 80.9 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/222 (15%), Positives = 81/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E  +  +      +  +  DK+ + + +   GVP  P    
Sbjct: 77  AIHPGYGFLSENAKFAKAVEESDFIFIGPRAESIEIMGDKVEAIRYMKKAGVPCVPGSGG 136

Query: 112 ---LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GD 164
                 +  ++    I  P +IK   GG   G+ +++K + +   +  + S        D
Sbjct: 137 PLGSDEKKNLEIAEKIGYPVIIKAAGGGGGRGMSIVRKKEDLISAISLTKSEARIAFNND 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLD 222
            + +E++++    +   V GD   +   +            +          PA  +  +
Sbjct: 197 MVYMEKFLENPRHIEIQVFGDGEGNAVYL-----FERDCSTQRRHQKVIEEAPAIGLSDE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             K +      A + +  RG    +FL+   + + +++E+N 
Sbjct: 252 ERKRIGEQCVSACKILKYRGAGTFEFLY--ENGEFYFIEMNT 291


>gi|170755835|ref|YP_001782324.1| putative carbamoyl-phosphate synthase large chain [Clostridium
           botulinum B1 str. Okra]
 gi|169121047|gb|ACA44883.1| phosphoribosylglycinamide synthetase family protein [Clostridium
           botulinum B1 str. Okra]
          Length = 381

 Score = 80.9 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 49/243 (20%), Positives = 91/243 (37%), Gaps = 38/243 (15%)

Query: 27  EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGE-----------DGLVQA----- 70
           +  G++V   D D +        K      V+ G   E           DG+V       
Sbjct: 21  KKNGYEVIATDRDENAKGFAYADKS----IVVDGTDKEKILEYAIKWNIDGIVTTAEITL 76

Query: 71  -----ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHL 123
                + E L +      + A+ +S DK   ++ +   G+      LV+      + ++ 
Sbjct: 77  FTVVFVCEKLGLK--GPSMKAAQISNDKYLMRKCMIENGIKSPRFWLVHNNDELNEIENE 134

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P VIKP+    S+G++       I       S  +  ++++IE++++G E +   + 
Sbjct: 135 IKFPVVIKPVDVSGSIGVMKADNMDEIKAIFDDISVKSRSNRVIIEEFMEGPEFSVETLS 194

Query: 184 -DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL---AHQAIG 239
            +   ++  I   K   Y Y      +   HV+PA I     KE++ L      A +   
Sbjct: 195 MNGIHNMIAITEKKVSGYPY-----FVEERHVIPANINNKQEKEIKDLVIRLLNACKFDN 249

Query: 240 CRG 242
           C G
Sbjct: 250 CAG 252


>gi|317012857|gb|ADU83465.1| biotin carboxylase [Helicobacter pylori Lithuania75]
          Length = 455

 Score = 80.9 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/225 (16%), Positives = 78/225 (34%), Gaps = 14/225 (6%)

Query: 49  LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
            + D  F   +G   E+     I     + +        AL  DK ++K V+   G+PV 
Sbjct: 84  FEADAIFPG-YGFLSENQNFVEICSHHSLEFIGPSAKVMALMSDKSKAKSVMKEAGMPVI 142

Query: 109 PS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSW 160
                 +   +   +    I  P +IK   GG   G+ V++    +         ++ S 
Sbjct: 143 EGSEGLLKSYQEAEEIADKIGYPVIIKAAAGGGGRGMRVVEDKSKLKNLYLAAETEALSA 202

Query: 161 NHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI 219
                + +E+++     +   ++ D   +V  +          + K             +
Sbjct: 203 FGDGSVYLEKFINKPKHIEVQILADKHGNVIHVGERDCSVQRRQQK----LIEETPAVVL 258

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              + K +   A  A + IG  G    +FL D   +  +++E+N 
Sbjct: 259 EEGVRKRLLETAIKAAKYIGYVGAGTFEFLLDSNMKDFYFMEMNT 303


>gi|226425233|gb|ACO53616.1| biotin carboxylase 1 [Arachis hypogaea]
 gi|226425235|gb|ACO53617.1| biotin carboxylase 2 [Arachis hypogaea]
          Length = 540

 Score = 80.9 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 80/220 (36%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
           +LH  +G   E+ +   +     I +      +  +  DK  ++  + + GVP  P    
Sbjct: 147 MLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRVMGDKSTARDTMKNAGVPTVPGSDG 206

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS----IPLDLLQSSSWNHGDQ 165
            +      +   + I  P +IK   GG   G+ + K+       +     ++++    D 
Sbjct: 207 LLQSTEEAIRLANEIGFPVMIKATAGGGGRGMRLAKEPGEFVKLLQQAKSEAAAAFGNDG 266

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+Y+ +   +   V+ D   +V               K             +  ++ 
Sbjct: 267 VYLEKYIQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLL----EEAPSPALTPELR 322

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K +   A  A  +IG  G+   +FL D      +++E+N 
Sbjct: 323 KAMGDAAVAAAASIGYIGVGTVEFLLDER-GSFYFMEMNT 361


>gi|146343635|ref|YP_001208683.1| putative biotin carboxylase [Bradyrhizobium sp. ORS278]
 gi|146196441|emb|CAL80468.1| putative biotin carboxylase [Bradyrhizobium sp. ORS278]
          Length = 651

 Score = 80.9 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/218 (16%), Positives = 79/218 (36%), Gaps = 20/218 (9%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL----VN 114
           +G   E+       +   + +      A A   +K  +K ++   GVP  P        +
Sbjct: 86  YGFLAENEDFAQACKDAGLVFVGPSPDAIAAMGNKAGAKTIMQRAGVPCVPGYQGEDGGD 145

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQLLIEQ 170
              +     I  P +IK + GG   G+ ++ +  + P  L  + S          +++E+
Sbjct: 146 EAMLREAKRIGFPVMIKAVAGGGGRGMRLVNEAYAFPDLLRSARSEAAAAFGDGTVILEK 205

Query: 171 YV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP---LDIYKE 226
            + +   +   V GD+  +   +            K        +  A  P    ++   
Sbjct: 206 AIANPRHIEIQVFGDSHGNAVHLGERDCSVQRRHQK-------LIEEAPSPAVGPELRAR 258

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +  +A  A +A+G  G    +FL D    + +++E+N 
Sbjct: 259 MGAVAVQAVKALGYEGAGTLEFLLDG-DGRFYFMEMNT 295


>gi|257889570|ref|ZP_05669223.1| carbamoyl-phosphate synthase [Enterococcus faecium 1,231,410]
 gi|257825930|gb|EEV52556.1| carbamoyl-phosphate synthase [Enterococcus faecium 1,231,410]
          Length = 1061

 Score = 80.9 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 55/296 (18%), Positives = 112/296 (37%), Gaps = 34/296 (11%)

Query: 25  ALEDAGFKVSQID-------VDRSVGLV--------------LAHLKPDLAFNVLHGNFG 63
           AL++ G++V  ++        D+ V                 L   +PD     L G  G
Sbjct: 36  ALKEEGYEVVLVNSNPATIMTDKEVADQVYIEPITLEFVSRILRKERPDALLPTLGGQTG 95

Query: 64  EDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFT 117
            +  ++     ILE L I    + + A   + D+   KQ++     P+  S +VN     
Sbjct: 96  LNMAMELAASGILEELNIELLGTKLSAIDQAEDRDLFKQLMKELNQPIPESEIVNTVEEA 155

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IE 176
           +D  + I  P +++P       G  + + ++ + +      S +   Q LIE+ + G  E
Sbjct: 156 VDFANKIGYPVIVRPAFTLGGTGGGMCENEEELRIVSENGLSLSPATQCLIERSIAGFKE 215

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +   VM D++ +   I V   + +     ++  +        +    Y+ ++  +    +
Sbjct: 216 IEYEVMRDSADNA--IVVCNMENFDPVGIHTGDSIVFAPSQTLSDHEYQMLRDASLSIIR 273

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           A+   G        DP S   + +E+N  P ++  S     +   GY   +L   +
Sbjct: 274 ALKIEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAKI 325



 Score = 67.5 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/225 (12%), Positives = 77/225 (34%), Gaps = 13/225 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC--PSILVNRFTMDSQHLISPPYV 129
           L    +    + I     + ++   +Q +    +P     +       +     I  P +
Sbjct: 646 LTAAGVKILGTTIEDLDRAENRDLFEQALKELDIPQPLGDTATSKEEAVVIASRIGYPVL 705

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           ++P        + +++  + +   +  +   +    +L+++Y+ G E     + D     
Sbjct: 706 VRPSYVLGGRAMEIVENQRDLEDYMEHAVKASPEHPVLVDRYLLGGECEVDAICDGE--- 762

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
             I +P    +       S +S  V P + +   I K ++         + C G+    F
Sbjct: 763 -TILIPGIMEHIERAGVHSGDSMAVYPPQTLSESIKKTIEDYTIRLALGLNCVGMMNIQF 821

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +      +V+ +E+N +   T     P ++   G    ++    +
Sbjct: 822 VIHE--NEVYVIEVNPRASRT----VPFLSKVTGIPMAQIATKAI 860


>gi|257884645|ref|ZP_05664298.1| carbamoyl-phosphate synthase [Enterococcus faecium 1,231,501]
 gi|257820483|gb|EEV47631.1| carbamoyl-phosphate synthase [Enterococcus faecium 1,231,501]
          Length = 1061

 Score = 80.9 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 55/296 (18%), Positives = 112/296 (37%), Gaps = 34/296 (11%)

Query: 25  ALEDAGFKVSQID-------VDRSVGLV--------------LAHLKPDLAFNVLHGNFG 63
           AL++ G++V  ++        D+ V                 L   +PD     L G  G
Sbjct: 36  ALKEEGYEVVLVNSNPATIMTDKEVADQVYIEPITLEFVSRILRKERPDALLPTLGGQTG 95

Query: 64  EDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFT 117
            +  ++     ILE L I    + + A   + D+   KQ++     P+  S +VN     
Sbjct: 96  LNMAMELAASGILEELNIELLGTKLSAIDQAEDRDLFKQLMKELNQPIPESEIVNTVEEA 155

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IE 176
           +D  + I  P +++P       G  + + ++ + +      S +   Q LIE+ + G  E
Sbjct: 156 VDFANKIGYPVIVRPAFTLGGTGGGMCENEEELRIVSENGLSLSPATQCLIERSIAGFKE 215

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +   VM D++ +   I V   + +     ++  +        +    Y+ ++  +    +
Sbjct: 216 IEYEVMRDSADNA--IVVCNMENFDPVGIHTGDSIVFAPSQTLSDHEYQMLRDASLSIIR 273

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           A+   G        DP S   + +E+N  P ++  S     +   GY   +L   +
Sbjct: 274 ALKIEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAKI 325



 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 26/225 (11%), Positives = 75/225 (33%), Gaps = 13/225 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC--PSILVNRFTMDSQHLISPPYV 129
           L    +    + I     + ++   +Q +    +P     +       +     I  P +
Sbjct: 646 LTAAGVKILGTTIEDLDRAENRDLFEQALKELDIPQPLGDTATSKEEAVVIASRIGYPVL 705

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           ++P        + +++  + +   +  +   +    +L+++Y+ G E     + D    +
Sbjct: 706 VRPSYVLGGRAMEIVENQRDLEDYMEHAVKASPEHPVLVDRYLLGGECEVDAICDGETVL 765

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               +   +           +S  V P + +   I K ++         + C G+    F
Sbjct: 766 IPGIMEHIERAGVHS----GDSMAVYPPQTLSESIKKTIEDYTIRLALGLNCVGMMNIQF 821

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +      +V+ +E+N +   T     P ++   G    ++    +
Sbjct: 822 VIHE--NEVYVIEVNPRASRT----VPFLSKVTGIPMAQIATKAI 860


>gi|114705588|ref|ZP_01438491.1| probable pyruvate carboxylase protein [Fulvimarina pelagi HTCC2506]
 gi|114538434|gb|EAU41555.1| probable pyruvate carboxylase protein [Fulvimarina pelagi HTCC2506]
          Length = 1152

 Score = 80.9 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 39/238 (16%), Positives = 86/238 (36%), Gaps = 22/238 (9%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRS 96
             V  V  H + D     +H  +G   E        E     +            +K+ +
Sbjct: 72  DEVIRVAKHAEVD----AIHPGYGLLSESPEFADACEENGFVFIGPSGDTMRKLGNKVAA 127

Query: 97  KQVVSSCGVPVCPS---ILVNRFTM-DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152
           + +    GVPV P+   +  ++  + +    +  P ++K   GG   G+ VI+    +  
Sbjct: 128 RNLAIEVGVPVVPATEPLPADKGRVREMADAVGYPLMLKASWGGGGRGMRVIRSADELER 187

Query: 153 DL----LQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYS 207
            +     ++ +    D++ +E+ V+    +   ++GD    V ++            K  
Sbjct: 188 GVTEGKREAKAAFGKDEVYLEKLVEKARHVEVQILGDKHGTVVDLFERDCSIQRRNQK-- 245

Query: 208 SLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
                   PA  +  +  +E+   A     A    G    +FL D  +++ +++E+N 
Sbjct: 246 ---VVERAPAPYLNHEKRRELAGYARKLADATNYVGAGTIEFLMDADTQEFYFIEVNP 300


>gi|69247604|ref|ZP_00604415.1| Carbamoyl-phosphate synthase, large subunit, glutamine-dependent
           [Enterococcus faecium DO]
 gi|257878232|ref|ZP_05657885.1| carbamoyl-phosphate synthase [Enterococcus faecium 1,230,933]
 gi|257880988|ref|ZP_05660641.1| carbamoyl-phosphate synthase [Enterococcus faecium 1,231,502]
 gi|257892490|ref|ZP_05672143.1| carbamoyl-phosphate synthase [Enterococcus faecium 1,231,408]
 gi|260559782|ref|ZP_05831961.1| carbamoyl-phosphate synthase [Enterococcus faecium C68]
 gi|293559354|ref|ZP_06675896.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecium
           E1162]
 gi|293569852|ref|ZP_06680939.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecium
           E1071]
 gi|294621724|ref|ZP_06700888.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecium
           U0317]
 gi|314939735|ref|ZP_07846957.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecium
           TX0133a04]
 gi|314941764|ref|ZP_07848641.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecium
           TX0133C]
 gi|314948309|ref|ZP_07851701.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecium
           TX0082]
 gi|314952397|ref|ZP_07855404.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecium
           TX0133A]
 gi|314991984|ref|ZP_07857437.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecium
           TX0133B]
 gi|314995718|ref|ZP_07860808.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecium
           TX0133a01]
 gi|68194772|gb|EAN09250.1| Carbamoyl-phosphate synthase, large subunit, glutamine-dependent
           [Enterococcus faecium DO]
 gi|257812460|gb|EEV41218.1| carbamoyl-phosphate synthase [Enterococcus faecium 1,230,933]
 gi|257816646|gb|EEV43974.1| carbamoyl-phosphate synthase [Enterococcus faecium 1,231,502]
 gi|257828869|gb|EEV55476.1| carbamoyl-phosphate synthase [Enterococcus faecium 1,231,408]
 gi|260074006|gb|EEW62329.1| carbamoyl-phosphate synthase [Enterococcus faecium C68]
 gi|291587600|gb|EFF19477.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecium
           E1071]
 gi|291598733|gb|EFF29786.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecium
           U0317]
 gi|291606718|gb|EFF36110.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecium
           E1162]
 gi|313590109|gb|EFR68954.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecium
           TX0133a01]
 gi|313593419|gb|EFR72264.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecium
           TX0133B]
 gi|313595514|gb|EFR74359.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecium
           TX0133A]
 gi|313599442|gb|EFR78285.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecium
           TX0133C]
 gi|313640964|gb|EFS05544.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecium
           TX0133a04]
 gi|313645290|gb|EFS09870.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecium
           TX0082]
          Length = 1061

 Score = 80.9 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 55/296 (18%), Positives = 112/296 (37%), Gaps = 34/296 (11%)

Query: 25  ALEDAGFKVSQID-------VDRSVGLV--------------LAHLKPDLAFNVLHGNFG 63
           AL++ G++V  ++        D+ V                 L   +PD     L G  G
Sbjct: 36  ALKEEGYEVVLVNSNPATIMTDKEVADQVYIEPITLEFVSRILRKERPDALLPTLGGQTG 95

Query: 64  EDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFT 117
            +  ++     ILE L I    + + A   + D+   KQ++     P+  S +VN     
Sbjct: 96  LNMAMELAASGILEELNIELLGTKLSAIDQAEDRDLFKQLMKELNQPIPESEIVNTVEEA 155

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IE 176
           +D  + I  P +++P       G  + + ++ + +      S +   Q LIE+ + G  E
Sbjct: 156 VDFANKIGYPVIVRPAFTLGGTGGGMCENEEELRIVSENGLSLSPATQCLIERSIAGFKE 215

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +   VM D++ +   I V   + +     ++  +        +    Y+ ++  +    +
Sbjct: 216 IEYEVMRDSADNA--IVVCNMENFDPVGIHTGDSIVFAPSQTLSDHEYQMLRDASLSIIR 273

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           A+   G        DP S   + +E+N  P ++  S     +   GY   +L   +
Sbjct: 274 ALKIEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAKI 325



 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 26/225 (11%), Positives = 75/225 (33%), Gaps = 13/225 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC--PSILVNRFTMDSQHLISPPYV 129
           L    +    + I     + ++   +Q +    +P     +       +     I  P +
Sbjct: 646 LTAAGVKILGTTIEDLDRAENRDLFEQALKELDIPQPLGDTATSKEEAVVIASRIGYPVL 705

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           ++P        + +++  + +   +  +   +    +L+++Y+ G E     + D    +
Sbjct: 706 VRPSYVLGGRAMEIVENQRDLEDYMEHAVKASPEHPVLVDRYLLGGECEVDAICDGETVL 765

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               +   +           +S  V P + +   I K ++         + C G+    F
Sbjct: 766 IPGIMEHIERAGVHS----GDSMAVYPPQTLSESIKKTIEDYTIRLALGLNCVGMMNIQF 821

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +      +V+ +E+N +   T     P ++   G    ++    +
Sbjct: 822 VIHE--NEVYVIEVNPRASRT----VPFLSKVTGIPMAQIATKAI 860


>gi|226307564|ref|YP_002767524.1| acyl-CoA carboxylase [Rhodococcus erythropolis PR4]
 gi|226186681|dbj|BAH34785.1| putative acyl-CoA carboxylase [Rhodococcus erythropolis PR4]
          Length = 1827

 Score = 80.9 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 47/233 (20%), Positives = 86/233 (36%), Gaps = 14/233 (6%)

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
            +   L   K D  + V  G   ED     I+  L I +      A  L  DK+ +K + 
Sbjct: 71  ELERALLAAKADAVW-VGWGFVAEDPAFAEIVAKLGITFIGPSADAMRLLGDKVAAKILA 129

Query: 101 SSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL- 155
              GVPV P     +            I  P +IK   GG   GI  +  +  + + L  
Sbjct: 130 EKVGVPVAPWSGGPVETRADARRHAQSIGYPLIIKARSGGGGRGIRKVWAEDELEVALER 189

Query: 156 ---QSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
              ++        + +E+ V D   +   V+ D   +V    V          K    +S
Sbjct: 190 TQGEAERSFGDPVVFLERLVTDARHVEVQVIADNHGNVWAPGVRDCSIQRRNQKVIEESS 249

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + V    +  +    +++++    +A G +G    ++L+ P ++   +LE+N 
Sbjct: 250 SPV----LTEEQSDHLKKVSAELVKAAGYQGAGTVEYLYQPENKLFTFLEVNT 298


>gi|262283256|ref|ZP_06061023.1| acetyl-CoA carboxylase biotin carboxylase subunit [Streptococcus
           sp. 2_1_36FAA]
 gi|262261508|gb|EEY80207.1| acetyl-CoA carboxylase biotin carboxylase subunit [Streptococcus
           sp. 2_1_36FAA]
          Length = 459

 Score = 80.9 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/220 (15%), Positives = 77/220 (35%), Gaps = 16/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  FG   E+     + E + + +         +  DK+ ++  +    VPV P    
Sbjct: 77  AIHPGFGFLSENSKFATMCEEVGVKFIGPSGAIMDMMGDKINARAQMIKANVPVIPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
            +      ++    I  P ++K   GG   GI  ++K + +         ++ +      
Sbjct: 137 EVFTAEEALEVAEKIGYPVMLKASAGGGGKGIRKVEKAEDLVAAFESASSEAKAAFGNGA 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+ +     +   ++ D    V  +            K             I   + 
Sbjct: 197 MYMERVIYPARHIEVQILADQHGHVVHLGERDCSLQRNNQKVL----EEAPSVAIGKTLR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +++   A  A Q++G       +FL+D    + +++E+N 
Sbjct: 253 QKIGDAAVRAAQSVGYENAGTIEFLYDENKGEFYFMEMNT 292


>gi|223043233|ref|ZP_03613280.1| acetyl-CoA carboxylase, biotin carboxylase [Staphylococcus capitis
           SK14]
 gi|314933700|ref|ZP_07841065.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Staphylococcus
           caprae C87]
 gi|222443444|gb|EEE49542.1| acetyl-CoA carboxylase, biotin carboxylase [Staphylococcus capitis
           SK14]
 gi|313653850|gb|EFS17607.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Staphylococcus
           caprae C87]
          Length = 451

 Score = 80.9 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/216 (15%), Positives = 77/216 (35%), Gaps = 15/216 (6%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVN 114
           +G   E+G    + E  ++ +      +      K  +K  +    VPV P     I   
Sbjct: 81  YGFLAENGDFAELCEACQLKFIGPSYESIQKMGIKDVAKAEMIKANVPVVPGSEGLIQSI 140

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGDQLLIE 169
                    I  P +IK   GG   GI V + ++ +   +        +++ +G   L E
Sbjct: 141 DDAKKVAKKIGYPVIIKATAGGGGKGIRVARDEKELETGIRMTQQEAETAFGNGGLYL-E 199

Query: 170 QYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           ++++    +   ++GD+  +V  +            +             +  +  +E+ 
Sbjct: 200 KFIENFRHIEIQIVGDSYGNVIHLGERDCTI----QRRMQKLVEEAPSPILSEEKRQEMG 255

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             A  A +A+        +F++D      +++E+N 
Sbjct: 256 NAAVRAAKAVNYENAGTIEFIYDLDDDNFYFMEMNT 291


>gi|159904998|ref|YP_001548660.1| pyruvate carboxylase subunit A [Methanococcus maripaludis C6]
 gi|159886491|gb|ABX01428.1| acetyl-CoA carboxylase, biotin carboxylase [Methanococcus
           maripaludis C6]
          Length = 497

 Score = 80.9 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/235 (15%), Positives = 85/235 (36%), Gaps = 18/235 (7%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
             +  V      D      +G   E+           I +      A  +   K+ +K+ 
Sbjct: 64  ERILKVAEKAGVDAVHPG-YGFLSENVKFAEECNKRGIEFIGPPTNAIDVMGSKINAKKA 122

Query: 100 VSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL- 154
           +   GVPV P       + +        I  P +IK   GG  +G+ V+   + +   + 
Sbjct: 123 MKIAGVPVLPGREEPIESEEEAIEVADEIGYPVIIKASAGGGGIGMNVVYNKEELVDTIQ 182

Query: 155 ----LQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209
               +  S++     + IE+Y++    +   V+ D   ++  +   +        K    
Sbjct: 183 STKSIAQSAFG-DSTVFIEKYLEKPRHIEIQVVADKFGNIIHLGDRECSIQRRHQKLIEE 241

Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + + ++      ++ + +   A  A +AI    +   +FL+   + + ++LE+N 
Sbjct: 242 SPSPIM----TEELRERMGNAAVKAAKAINYHSVGTVEFLY--SNNEFYFLEMNT 290


>gi|220928371|ref|YP_002505280.1| acetyl-CoA carboxylase, biotin carboxylase [Clostridium
           cellulolyticum H10]
 gi|219998699|gb|ACL75300.1| acetyl-CoA carboxylase, biotin carboxylase [Clostridium
           cellulolyticum H10]
          Length = 458

 Score = 80.9 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 42/219 (19%), Positives = 86/219 (39%), Gaps = 16/219 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+    ++ E   I +        +   DK  +++++ +  VPV P    
Sbjct: 77  AIHPGYGLLSENAKFVSLCEKCNIVFIGPSADIISKMGDKDNARRMMQNASVPVIPGSDI 136

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQL 166
           I   +  +   + I  P +IK   GG   GI ++ K+       L +SS           
Sbjct: 137 IENPKDAIKIANDIGYPLLIKARAGGGGKGIRLVNKEDEFESAYLTASSEAKSAFGDGAC 196

Query: 167 LIEQYVDGI-ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
            IE+Y+  +  +   ++ D    V  +   +    S + K+  L         I  ++ K
Sbjct: 197 YIEKYLSPVKHVEMQILCDNYGKVICLGERE---CSLQRKHQKL-VEESPSTAIDTELRK 252

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           ++  ++    +A    G+   +FL D  S   +++E+N 
Sbjct: 253 KMMEVSVKVAKATNYTGVGTVEFLLDKDSN-FYFMEMNT 290


>gi|310779265|ref|YP_003967598.1| acetyl-CoA carboxylase, biotin carboxylase [Ilyobacter polytropus
           DSM 2926]
 gi|309748588|gb|ADO83250.1| acetyl-CoA carboxylase, biotin carboxylase [Ilyobacter polytropus
           DSM 2926]
          Length = 450

 Score = 80.9 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 76/220 (34%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+     I  +  I +            DK  +++     GVP+     +
Sbjct: 77  AIHPGYGFLAENAQFAKICGMHNIVFIGPSPECIINMGDKATARKTAVENGVPLTEGTGL 136

Query: 114 NRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSWNHGDQ 165
            +   +++      I  P +IK   GG   G+ + + D  +         ++ +      
Sbjct: 137 IKNIEEAKKEVNERIGYPVMIKATAGGGGKGMRIARNDNELATNMVAAQNEAEAAFGNPD 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE++V+    +   ++GD   +V  +            K           A +P D+ 
Sbjct: 197 VYIEKFVENPRHIEIQIIGDKHGNVVHLGERDCSIQRRHQK----LIEEAPSAILPQDVR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +   A    +AI        +FL D      F++E+N 
Sbjct: 253 VAMGEAAVKLAKAINYDSAGTLEFLVDKK-NDFFFMEMNT 291


>gi|262201327|ref|YP_003272535.1| carbamoyl-phosphate synthase L chain ATP--binding protein [Gordonia
           bronchialis DSM 43247]
 gi|262084674|gb|ACY20642.1| Carbamoyl-phosphate synthase L chain ATP- binding protein [Gordonia
           bronchialis DSM 43247]
          Length = 680

 Score = 80.9 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 39/197 (19%), Positives = 73/197 (37%), Gaps = 16/197 (8%)

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD----SQHLISPPYVIKPLK 134
           +      A A   DK+ ++  V+   VPV P +     T D    +   I  P +IKP  
Sbjct: 105 FIGPPAQAIATMGDKITARAAVTERDVPVVPGLSRPGLTDDELIAAAPDIGFPVLIKPSA 164

Query: 135 GGSSLGIIVIKKDQSIPLDLL-----QSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLD 188
           GG   G+  ++    +P  L+      +S++   D L +E +VD    +   V+ D   +
Sbjct: 165 GGGGKGMHRVENADDLPDALVRARREAASAFG-DDTLFLEHFVDTPRHIEVQVLADQHGN 223

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           V  +   +        K             +       +   A  A +++G  G    +F
Sbjct: 224 VIHLGERECSLQRRHQK----VIEEAPSVLLDETTRARIGAAACDAARSVGYTGAGTVEF 279

Query: 249 LFDP-LSRKVFWLEINV 264
           +       + F++E+N 
Sbjct: 280 IVSAHRPDEFFFMEMNT 296


>gi|123965304|ref|YP_001010385.1| acetyl-CoA carboxylase biotin carboxylase subunit [Prochlorococcus
           marinus str. MIT 9515]
 gi|123199670|gb|ABM71278.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Prochlorococcus
           marinus str. MIT 9515]
          Length = 449

 Score = 80.9 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 82/220 (37%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     +     I +      A     DK  +K+ +   GVP  P    
Sbjct: 77  AIHPGYGFLAENDKFAEMCNDHGITFIGPSPNAIRSMGDKSTAKETMERVGVPTVPGSKG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSWNHGDQ 165
            +            I  P +IK   GG   G+ +++   ++         ++ +    D 
Sbjct: 137 LLSSVEEAYQMAKEIGYPVIIKATAGGGGRGMRLVENKANLEKMFKAAQGEAEAAFGNDG 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           L +E+++     +   ++ D S +V  +        S + ++  L      PA I   + 
Sbjct: 197 LYMEKFIKKPRHVEIQILADRSGNVVHLGERD---CSVQRRHQKLLEESPSPA-INRSLR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +++   A  A ++I   G    +FL D  +   +++E+N 
Sbjct: 253 EKMGNAAIAAAKSISYEGAGTVEFLVDDENN-FYFMEMNT 291


>gi|120435330|ref|YP_861016.1| biotin carboxylase [Gramella forsetii KT0803]
 gi|117577480|emb|CAL65949.1| biotin carboxylase [Gramella forsetii KT0803]
          Length = 480

 Score = 80.9 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 44/219 (20%), Positives = 82/219 (37%), Gaps = 17/219 (7%)

Query: 58  LHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS---- 110
           +H  +G   E+      +E   I +   G  A  +   K+ +K  V +  +P+ P     
Sbjct: 77  IHPGYGFLSENASFAESVEKNGITWIGPGSEAIKVMGSKLAAKDAVKAYDIPMVPGIDEA 136

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSWNHGDQL 166
           I          + I  P +IK   GG   G+ V++K++ +       + ++ S      +
Sbjct: 137 ITDTEKAKKIANEIGFPILIKASAGGGGKGMRVVEKEKELEDQMKRAISEAESAFGDGSV 196

Query: 167 LIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
            IE+YV     +   V+ D   +   +   +        K             +   + K
Sbjct: 197 FIEKYVSSPRHIEIQVLADTHGNYVHLFERECSIQRRHQK----VVEEAPSVVLDDKLRK 252

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           E+   A    +A    G    +FLFD  +RK ++LE+N 
Sbjct: 253 EMGEAAVKVAKACDYVGAGTVEFLFDE-NRKFYFLEMNT 290


>gi|224436448|ref|ZP_03657462.1| biotin carboxylase [Helicobacter cinaedi CCUG 18818]
 gi|313142960|ref|ZP_07805153.1| biotin carboxylase [Helicobacter cinaedi CCUG 18818]
 gi|313127991|gb|EFR45608.1| biotin carboxylase [Helicobacter cinaedi CCUG 18818]
          Length = 454

 Score = 80.9 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 80/225 (35%), Gaps = 14/225 (6%)

Query: 49  LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
           LK D  F   +G   E+     I     I +         L  DK ++K V+   GVPV 
Sbjct: 79  LKVDAIFPG-YGFLSENQNFVEICSHHNIEFIGPSAEVMVLMSDKSKAKDVMKEAGVPVI 137

Query: 109 ---PSILVNRFTMDS-QHLISPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSW 160
                 L +    +   + I  P ++K   GG   G+ V++K + +         ++ S 
Sbjct: 138 LGSDGALKDYKEAEKIANEIGYPVILKAAAGGGGRGMRVVEKPEMLKNLYLAAESEAVSA 197

Query: 161 NHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI 219
                + +E+++     +   ++ D   +V  I          + K             +
Sbjct: 198 FGDGTIYMEKFIRNPKHIEVQILADKHGNVLHIGERDCSAQRRQQK----LIEESPAVVL 253

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             ++ + +   A  A Q I   G    +FL D      +++E+N 
Sbjct: 254 KPEVRQRLLDTAVKAAQYIKYVGAGTFEFLLDANYEDFYFMEMNT 298


>gi|167757325|ref|ZP_02429452.1| hypothetical protein CLORAM_02875 [Clostridium ramosum DSM 1402]
 gi|237735597|ref|ZP_04566078.1| acetyl-CoA carboxylase [Mollicutes bacterium D7]
 gi|167703500|gb|EDS18079.1| hypothetical protein CLORAM_02875 [Clostridium ramosum DSM 1402]
 gi|229381342|gb|EEO31433.1| acetyl-CoA carboxylase [Coprobacillus sp. D7]
          Length = 450

 Score = 80.9 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/237 (15%), Positives = 83/237 (35%), Gaps = 21/237 (8%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRS 96
           +++  V   L  D     +H  FG   E+     ++E   I +         +  +K  +
Sbjct: 64  KNILSVATALGCD----AIHPGFGFLSENSTFARLVEECGITFIGPSGDVIDMMGNKSMA 119

Query: 97  KQVVSSCGVPVCP----SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152
           +Q +   GVPV P    S+   +   +  + I  P +IK   GG   G+     ++    
Sbjct: 120 RQKMIEAGVPVVPGSDGSVNTLQEAKEVANQIGYPVLIKASAGGGGRGMRKAFSEEEFDD 179

Query: 153 DL----LQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYS 207
                  ++ +    D + +E+ + +   +   ++ D   +V  +            K  
Sbjct: 180 AYLTAKAEAKACFGDDDMYLEKLILNPKHIEFQILADNYGNVIHLGERDCSIQRRNQKMI 239

Query: 208 SLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
                      +   + +++   A  A +  G R     +++ D      +++E+N 
Sbjct: 240 ----EEAPSKALTPLLRQKMGEDAVKAAKGAGYRNAGTIEYVLD-QDGNYYFIEMNT 291


>gi|116494804|ref|YP_806538.1| pyruvate carboxylase [Lactobacillus casei ATCC 334]
 gi|116104954|gb|ABJ70096.1| Pyruvate carboxylase [Lactobacillus casei ATCC 334]
          Length = 1145

 Score = 80.9 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/245 (13%), Positives = 82/245 (33%), Gaps = 25/245 (10%)

Query: 33  VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASAL 89
            + +D+D  +  +      D     +H  +G   E+      +    + +         +
Sbjct: 58  AAYLDMD-DIIRIAKQSGAD----AIHPGYGLLSENAEFARKVRAAGLIFVGPRSELLDI 112

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFT----MDSQHLISPPYVIKPLKGGSSLGIIVIK 145
             DK+ +K+     G+   P             D       P ++K   GG   G+ ++ 
Sbjct: 113 FGDKVAAKEAAHKAGLVTIPGTPEPTRDFSEIQDFTATHGFPVMLKAASGGGGKGMRIVH 172

Query: 146 KDQSIPL----DLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFY 200
            +  +       + ++ +    D++ +E+Y+     +   V+GD    +           
Sbjct: 173 SEAELEAVYQNAVNEAKASFGDDRMYVEKYIASAKHIEVQVLGDEHGHLL-----HLFER 227

Query: 201 SYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
              ++        + PA  +P  +   + + A    Q +        +FL D    + ++
Sbjct: 228 DCSVQRRQQKVVEIAPAVALPTALRARICQSAVDLMQGLHYENAGTVEFLVD--GDQYYF 285

Query: 260 LEINV 264
           +E+N 
Sbjct: 286 IEVNP 290


>gi|312793564|ref|YP_004026487.1| carbamoyl-phosphate synthase, large subunit [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312180704|gb|ADQ40874.1| carbamoyl-phosphate synthase, large subunit [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 1075

 Score = 80.9 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 54/289 (18%), Positives = 105/289 (36%), Gaps = 39/289 (13%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQID-------VDRS--------------VGLV 45
           G ++E + S   G     AL++ G +V  I+        D++              +  +
Sbjct: 21  GQAAEFDYS---GSQACKALKEEGIEVILINSNPATIMTDKTMADSIYIEPITCEIIEKI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   + D     L G  G +  V+     IL+   +    + I A   + D+   KQ++ 
Sbjct: 78  IQKERVDAILPTLGGQTGLNTAVELYKSGILDKYNVKVIGTNIEAIEFAEDRQLFKQLMI 137

Query: 102 SCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G PV PS +VN     +     I  P +I+P       G  +   ++       +  S
Sbjct: 138 KIGEPVVPSEVVNCVEDGLAFAKKIGFPVIIRPAYTLGGTGGGIANNEEEFVEIARRGLS 197

Query: 160 WNHGDQLLIEQYVDG---IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216
           ++   Q+L+E+ + G   IE       +  L              +     + +S  V P
Sbjct: 198 YSPVHQILVEKSIKGWKEIEYEVMRDSNGCLITVCNMENIDPVGIH-----TGDSIVVAP 252

Query: 217 AK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           ++ +    Y+ ++  A     A+   G     F  +P S +   +E+N 
Sbjct: 253 SQTLSDKEYQMLRSSALKIIDALKIEGGCNVQFALNPDSFEYAVIEVNP 301



 Score = 74.4 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 36/229 (15%), Positives = 90/229 (39%), Gaps = 19/229 (8%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI--LVNRFTMDSQHLISPPYVIKPL 133
            I    +      ++ D+ R  ++++   +   P       +  +   + +  P +++P 
Sbjct: 654 GIKIFGTSAEGIDIAEDRERFDKILNKLNIKRPPGYTCYTLQEALRIANSLGYPVLVRPS 713

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
                 G+ +   D  I   L  + + N    +LI++Y+ G E+    + D      +I 
Sbjct: 714 YVLGGQGMKIAFDDDDIVEMLSYAKNLN-NHPILIDKYIVGKEIEVDAISDGE----DIL 768

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
           +P    +       S +S  + PA+ I   I +++        + + C+G+    F+   
Sbjct: 769 IPGIMEHIERAGVHSGDSISLYPARNISKYIEEKIVEYTLKIARELECKGLMNVQFIV-- 826

Query: 253 LSRKVFWLEIN-----VQPGMTPVSIFPEMAAYA----GYSFRELLLWM 292
            + +++ +E+N       P ++ V+  P +        GY  ++L+  +
Sbjct: 827 QNEELYVIEVNPRGSRTVPFLSKVTGVPMVELATMVSLGYKLKDLVNTV 875


>gi|192291092|ref|YP_001991697.1| acetyl-CoA carboxylase biotin carboxylase subunit [Rhodopseudomonas
           palustris TIE-1]
 gi|192284841|gb|ACF01222.1| acetyl-CoA carboxylase, biotin carboxylase [Rhodopseudomonas
           palustris TIE-1]
          Length = 450

 Score = 80.9 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 74/220 (33%), Gaps = 18/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---- 109
            +H  +G   E+     IL    + +         L  DK+ +K+     G+PV P    
Sbjct: 77  AVHPGYGFLSENARFAEILSDHNLHFIGPKAEHIRLMGDKIEAKKTAKRLGIPVVPGSDG 136

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
            +  +   M     I  P ++K   GG   G+ V      + L +     ++ +      
Sbjct: 137 GVGPDDDAMAIAKEIGFPVLVKAAAGGGGRGMKVAHTADDLALAISTAGNEAKAAFGDAS 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+Y+     +   V+GD       +            K             I  +  
Sbjct: 197 VYLEKYLQKPRHIEIQVLGDGRGGAIHLGERDCSLQRRHQK----VWEESPSPVISPEAR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +  +   A Q +   G+   +FL+     + +++E+N 
Sbjct: 253 ARIGGICAKAMQDMQYLGVGTIEFLY--EDGEFYFIEMNT 290


>gi|319935921|ref|ZP_08010345.1| acetyl-CoA carboxylase [Coprobacillus sp. 29_1]
 gi|319809035|gb|EFW05531.1| acetyl-CoA carboxylase [Coprobacillus sp. 29_1]
          Length = 455

 Score = 80.9 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 84/220 (38%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--I 111
            +H  FG   E+     ++    + +         +  +K  +++++   GVPV P    
Sbjct: 77  AIHPGFGFLSENSQFARLIIQCGLIWVGPSPEIIDMLGNKAEARKLMKEAGVPVIPGSKE 136

Query: 112 LVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL----DLLQSSSWNHGDQ 165
           +++      +    +  P +IK   GG   G+ +I+  +           ++ +    D+
Sbjct: 137 IIDSVEHGQNIAVDLGYPVMIKASNGGGGRGMRIIQNKEEFEKQYQNAKSEAKACFGDDE 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+Y++    +   V+GD    V  +      F     K       H+    +  ++ 
Sbjct: 197 VYLEKYIENPKHIEVQVVGDQYGHVIHLFERDCSFQRRHQKMIEEAPCHI----LKKNVR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +++   A  A   +G   +   +FL D      +++E+N 
Sbjct: 253 EKLFEDALKACHHVGYNSVGTIEFLLDKHGN-YYFMEMNT 291


>gi|229552120|ref|ZP_04440845.1| pyruvate carboxylase [Lactobacillus rhamnosus LMS2-1]
 gi|229314553|gb|EEN80526.1| pyruvate carboxylase [Lactobacillus rhamnosus LMS2-1]
          Length = 1145

 Score = 80.9 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/245 (13%), Positives = 84/245 (34%), Gaps = 25/245 (10%)

Query: 33  VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASAL 89
            + +D+D  +  +      D     +H  +G   E+      +    + +    +    +
Sbjct: 58  AAYLDMD-DIIRIAKQSGAD----TIHPGYGLLSENATFARKVRAAGLTFVGPRLELLDV 112

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFT----MDSQHLISPPYVIKPLKGGSSLGIIVIK 145
             DK+ +K+     G+   P             D       P ++K   GG   G+ ++ 
Sbjct: 113 FGDKVAAKEAAHKAGLTTIPGTPEPTRDFTEIQDFTAKHGFPVMLKAASGGGGKGMRIVH 172

Query: 146 KDQSIPL----DLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFY 200
            +  +       + ++ +    D++ +E+Y+     +   V+GD    +           
Sbjct: 173 SEAELEAVYQNAVNEAKASFGDDRMYVEKYIASAKHVEVQVLGDEHGHLL-----HLFER 227

Query: 201 SYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
              ++        + PA  +PL +   + + A     ++        +FL D    + ++
Sbjct: 228 DCSVQRRQQKVVEIAPAVALPLALRNRICQSAVDLMASLHYENAGTVEFLVD--GDQYYF 285

Query: 260 LEINV 264
           +E+N 
Sbjct: 286 IEVNP 290


>gi|83859091|ref|ZP_00952612.1| 3-methylcrotonyl-CoA carboxylase alpha subunit [Oceanicaulis
           alexandrii HTCC2633]
 gi|83852538|gb|EAP90391.1| 3-methylcrotonyl-CoA carboxylase alpha subunit [Oceanicaulis
           alexandrii HTCC2633]
          Length = 661

 Score = 80.9 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 54/275 (19%), Positives = 99/275 (36%), Gaps = 32/275 (11%)

Query: 15  SLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH---LKPDLAFNV--------LHGNFG 63
           S  +  A  S  +     V Q D+   +G  LA    L  D   +         +H  +G
Sbjct: 28  SGRTAIAVYSEADANALHVRQADMAVCIGPALASESYLDIDAVLDAAKKTGAEAIHPGYG 87

Query: 64  ---ED-GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
              E+ G  +A++E   + +      A     DK R+K+++   GVP  P    +  T  
Sbjct: 88  FLSENAGFARAVIE-AGLVWIGPPPDAIDAMGDKARAKELMIKAGVPTLPGWQGDDQTDA 146

Query: 120 ----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQLLIEQY 171
                   +  P +IK + GG   G+ +++        L  +          D +LIE++
Sbjct: 147 NLKAEADKVGYPLLIKAVAGGGGRGMRIVRSAGEFDEALASARREAKSAFGDDAVLIEKF 206

Query: 172 VD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQR 229
           V+ G  +   V  D   +                +          P+  +  ++ + +  
Sbjct: 207 VERGRHVEIQVFADVEGNTI-----HLGERDCSAQRRRQKVIEEAPSPAVNPELRETMGA 261

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            A  A +A+G  G    +FL D      ++LE+N 
Sbjct: 262 DAVAAAKAVGYVGAGTVEFLLDES-GDYYFLEMNT 295


>gi|222087762|ref|YP_002546299.1| pyruvate carboxylase protein [Agrobacterium radiobacter K84]
 gi|221725210|gb|ACM28366.1| pyruvate carboxylase protein [Agrobacterium radiobacter K84]
          Length = 1166

 Score = 80.9 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 79/221 (35%), Gaps = 18/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E        +   I +            +K+ ++ +  S GVPV P+   
Sbjct: 98  AIHPGYGLLSESPEFVDACDAAGIIFIGPRADTMRQLGNKVAARNLAISVGVPVVPATEP 157

Query: 114 NRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
               M         I  P ++K   GG   G+  I+  + +  ++ ++          D+
Sbjct: 158 LPDDMKLVAKMAEEIGYPVMLKASWGGGGRGMRAIRDPKDLAKEVTEAKREAMAAFGKDE 217

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           + +E+ V+    +   V+GD   +V              ++  +       PA  +    
Sbjct: 218 VYLEKLVERARHVESQVLGDTHGNVV-----HLFERDCSVQRRNQKVVERAPAPYLTDAQ 272

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +E+   +     A G  G    ++L D  + K +++E+N 
Sbjct: 273 RQELAAYSLKIAGATGYVGAGTVEYLMDADTGKFYFIEVNP 313


>gi|241172953|ref|XP_002410805.1| propionyl-coenzyme A carboxylase, alpha polypeptide, putative
           [Ixodes scapularis]
 gi|215495002|gb|EEC04643.1| propionyl-coenzyme A carboxylase, alpha polypeptide, putative
           [Ixodes scapularis]
          Length = 694

 Score = 80.9 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 78/220 (35%), Gaps = 19/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+     +     I +      A      K  SK ++S+ GVPV      
Sbjct: 100 AIHPGYGFLSENTEFAELCAQEGIIFVGPPASAIRDMGIKSTSKAIMSAAGVPVIVGYHG 159

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
              + +        I  P + K ++GG   G+ ++  +      L  +          D 
Sbjct: 160 EEQSEEKLKEEARRIGFPVMAKAVRGGGGKGMRIVMNEGEFDAQLESAKREAMKSFGDDN 219

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIY 224
           +LIE++V        V GD   +   +           ++          PA  +  +  
Sbjct: 220 MLIEKFVANPR-QVQVFGDHHGNYVYL-----FERDCSVQRRHQKVIEEAPAPGVTEETR 273

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +   A  A +A+   G    +F+ D + +K +++E+N 
Sbjct: 274 RLLGEAAVKAARAVNYVGAGTVEFIMD-VDQKFYFMEMNT 312


>gi|317485017|ref|ZP_07943900.1| carbamoyl-phosphate synthase subunit L [Bilophila wadsworthia
           3_1_6]
 gi|316923755|gb|EFV44958.1| carbamoyl-phosphate synthase subunit L [Bilophila wadsworthia
           3_1_6]
          Length = 1236

 Score = 80.9 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 42/241 (17%), Positives = 97/241 (40%), Gaps = 27/241 (11%)

Query: 41  SVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSK 97
            + L++A  K       +H  +G   ED       E   I +  S   +  L  +K++ +
Sbjct: 74  DLDLIIAKAK-QRGIIAIHPGWGFASEDERFPQKCEEAGITFIGSKADSMNLLGNKVQVR 132

Query: 98  QVVSSCGVPVCPS------ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
           ++    G+PV P       +   R  +D    I+ P ++K   GG   GI ++++   + 
Sbjct: 133 KIAKRLGIPVVPGSEGAVDVPAARKVVDE---ITLPIMLKAEGGGGGRGIFLVREKSELE 189

Query: 152 LDLLQSSSWNH----GDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
               ++S+         +L +E+Y++    +   V+ D   +V        D     ++ 
Sbjct: 190 DAFFKASAMAQASFGNPRLYVEKYLEQVRHIEIQVIADQHGNVFAF-----DERDCSVQR 244

Query: 207 SSLNSTHVLP---AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
           +      + P   A I  ++ + ++  + +  + +G   ++  +FL  P   + + +E+N
Sbjct: 245 NHQKLVEITPSPWAGITPELRERLKEYSRMLVREVGYYSLATVEFLVTPQ-GEPYLIEVN 303

Query: 264 V 264
            
Sbjct: 304 T 304


>gi|269203232|ref|YP_003282501.1| acetyl-CoA carboxylase, biotin carboxylase, putative
           [Staphylococcus aureus subsp. aureus ED98]
 gi|262075522|gb|ACY11495.1| acetyl-CoA carboxylase, biotin carboxylase, putative
           [Staphylococcus aureus subsp. aureus ED98]
          Length = 453

 Score = 80.9 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 41/220 (18%), Positives = 80/220 (36%), Gaps = 18/220 (8%)

Query: 56  NVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
           N +H  +G   E       +E   I +         +  DK+ ++Q V   GVPV P   
Sbjct: 75  NAIHPGYGFLSESTKFAQTVEEQGIAFIGPTKKTMEMMGDKITARQTVHHAGVPVIPGSN 134

Query: 111 --ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS----WNHGD 164
             +       +    I  P VIK   GG   GI ++KK + +     ++ S    +   D
Sbjct: 135 GAVNHVSEIENLAKDIGYPVVIKAASGGGGKGIRIVKKAEDLEKAFKEAKSEGKKYFDDD 194

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           ++ +E ++     +   VMGD   +   +            + +         A +  + 
Sbjct: 195 RVYVEAFIPVAKHVEVQVMGDGQDNYVHLGERDCSV----QRKNQKLIEESPCAALTEER 250

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            +++   A    +A   R     +FL    +   +++E+N
Sbjct: 251 RQQICNDAVKVARAANYRSAGTIEFLVTDTAH--YFIEMN 288


>gi|15924596|ref|NP_372130.1| acetyl-CoA carboxylase [Staphylococcus aureus subsp. aureus Mu50]
 gi|15927186|ref|NP_374719.1| hypothetical protein SA1434 [Staphylococcus aureus subsp. aureus
           N315]
 gi|57651997|ref|YP_186501.1| acetyl-CoA carboxylase, biotin carboxylase, putative
           [Staphylococcus aureus subsp. aureus COL]
 gi|87160781|ref|YP_494258.1| acetyl-CoA carboxylase, biotin carboxylase [Staphylococcus aureus
           subsp. aureus USA300_FPR3757]
 gi|88195415|ref|YP_500219.1| acetyl-CoA carboxylase, biotin carboxylase [Staphylococcus aureus
           subsp. aureus NCTC 8325]
 gi|148268087|ref|YP_001247030.1| carbamoyl-phosphate synthase L chain, ATP-binding [Staphylococcus
           aureus subsp. aureus JH9]
 gi|150394155|ref|YP_001316830.1| carbamoyl-phosphate synthase L chain ATP-binding [Staphylococcus
           aureus subsp. aureus JH1]
 gi|151221719|ref|YP_001332541.1| acetyl-CoA biotin carboxylase [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|156979924|ref|YP_001442183.1| acetyl-CoA carboxylase [Staphylococcus aureus subsp. aureus Mu3]
 gi|161509833|ref|YP_001575492.1| biotin carboxylase [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|221141124|ref|ZP_03565617.1| biotin carboxylase [Staphylococcus aureus subsp. aureus str.
           JKD6009]
 gi|253315236|ref|ZP_04838449.1| acetyl-CoA carboxylase, biotin carboxylase [Staphylococcus aureus
           subsp. aureus str. CF-Marseille]
 gi|253732261|ref|ZP_04866426.1| acetyl-CoA carboxylase [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|255006391|ref|ZP_05144992.2| acetyl-CoA carboxylase, biotin carboxylase [Staphylococcus aureus
           subsp. aureus Mu50-omega]
 gi|257793681|ref|ZP_05642660.1| acetyl-CoA carboxylase [Staphylococcus aureus A9781]
 gi|258411020|ref|ZP_05681300.1| biotin carboxylase [Staphylococcus aureus A9763]
 gi|258420178|ref|ZP_05683133.1| biotin carboxylase [Staphylococcus aureus A9719]
 gi|258438180|ref|ZP_05689464.1| carbamoyl-phosphate synthase subunit L ATP-binding [Staphylococcus
           aureus A9299]
 gi|258443643|ref|ZP_05691982.1| carbamoyl-phosphate synthase subunit L ATP-binding [Staphylococcus
           aureus A8115]
 gi|258446850|ref|ZP_05695004.1| carbamoyl-phosphate synthase subunit L ATP-binding [Staphylococcus
           aureus A6300]
 gi|258448764|ref|ZP_05696876.1| carbamoyl-phosphate synthase subunit L [Staphylococcus aureus
           A6224]
 gi|258450567|ref|ZP_05698629.1| acetyl-CoA carboxylase [Staphylococcus aureus A5948]
 gi|258453583|ref|ZP_05701561.1| acetyl-CoA carboxylase [Staphylococcus aureus A5937]
 gi|262048602|ref|ZP_06021485.1| hypothetical protein SAD30_0998 [Staphylococcus aureus D30]
 gi|282893109|ref|ZP_06301343.1| accC; acetyl-CoA biotin carboxylase [Staphylococcus aureus A8117]
 gi|282920153|ref|ZP_06327878.1| accC; acetyl-CoA biotin carboxylase [Staphylococcus aureus A9765]
 gi|284024663|ref|ZP_06379061.1| acetyl-CoA carboxylase, biotin carboxylase [Staphylococcus aureus
           subsp. aureus 132]
 gi|295406728|ref|ZP_06816533.1| accC [Staphylococcus aureus A8819]
 gi|296277072|ref|ZP_06859579.1| acetyl-CoA carboxylase, biotin carboxylase [Staphylococcus aureus
           subsp. aureus MR1]
 gi|297245690|ref|ZP_06929555.1| accC [Staphylococcus aureus A8796]
 gi|304380797|ref|ZP_07363464.1| acetyl-CoA carboxylase, biotin carboxylase [Staphylococcus aureus
           subsp. aureus ATCC BAA-39]
 gi|13701404|dbj|BAB42698.1| SA1434 [Staphylococcus aureus subsp. aureus N315]
 gi|14247377|dbj|BAB57768.1| acetyl-CoA carboxylase [Staphylococcus aureus subsp. aureus Mu50]
 gi|57286183|gb|AAW38277.1| acetyl-CoA carboxylase, biotin carboxylase, putative
           [Staphylococcus aureus subsp. aureus COL]
 gi|87126755|gb|ABD21269.1| acetyl-CoA carboxylase, biotin carboxylase [Staphylococcus aureus
           subsp. aureus USA300_FPR3757]
 gi|87202973|gb|ABD30783.1| acetyl-CoA carboxylase, biotin carboxylase, putative
           [Staphylococcus aureus subsp. aureus NCTC 8325]
 gi|147741156|gb|ABQ49454.1| Carbamoyl-phosphate synthase L chain, ATP-binding [Staphylococcus
           aureus subsp. aureus JH9]
 gi|149946607|gb|ABR52543.1| Carbamoyl-phosphate synthase L chain ATP-binding [Staphylococcus
           aureus subsp. aureus JH1]
 gi|150374519|dbj|BAF67779.1| acetyl-CoA biotin carboxylase [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|156722059|dbj|BAF78476.1| acetyl-CoA carboxylase [Staphylococcus aureus subsp. aureus Mu3]
 gi|160368642|gb|ABX29613.1| biotin carboxylase [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|253724050|gb|EES92779.1| acetyl-CoA carboxylase [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|257787653|gb|EEV25993.1| acetyl-CoA carboxylase [Staphylococcus aureus A9781]
 gi|257840170|gb|EEV64634.1| biotin carboxylase [Staphylococcus aureus A9763]
 gi|257843889|gb|EEV68283.1| biotin carboxylase [Staphylococcus aureus A9719]
 gi|257848224|gb|EEV72215.1| carbamoyl-phosphate synthase subunit L ATP-binding [Staphylococcus
           aureus A9299]
 gi|257851049|gb|EEV74992.1| carbamoyl-phosphate synthase subunit L ATP-binding [Staphylococcus
           aureus A8115]
 gi|257854425|gb|EEV77374.1| carbamoyl-phosphate synthase subunit L ATP-binding [Staphylococcus
           aureus A6300]
 gi|257858042|gb|EEV80931.1| carbamoyl-phosphate synthase subunit L [Staphylococcus aureus
           A6224]
 gi|257861725|gb|EEV84524.1| acetyl-CoA carboxylase [Staphylococcus aureus A5948]
 gi|257864314|gb|EEV87064.1| acetyl-CoA carboxylase [Staphylococcus aureus A5937]
 gi|259163249|gb|EEW47808.1| hypothetical protein SAD30_0998 [Staphylococcus aureus D30]
 gi|269941092|emb|CBI49478.1| putative biotin carboxylase subunit ofacetyl-CoA carboxylase
           [Staphylococcus aureus subsp. aureus TW20]
 gi|282594501|gb|EFB99486.1| accC; acetyl-CoA biotin carboxylase [Staphylococcus aureus A9765]
 gi|282764427|gb|EFC04553.1| accC; acetyl-CoA biotin carboxylase [Staphylococcus aureus A8117]
 gi|285817288|gb|ADC37775.1| putative biotin carboxylase subunit of acetyl-CoA carboxylase
           [Staphylococcus aureus 04-02981]
 gi|294968475|gb|EFG44499.1| accC [Staphylococcus aureus A8819]
 gi|297177341|gb|EFH36593.1| accC [Staphylococcus aureus A8796]
 gi|302751435|gb|ADL65612.1| acetyl-CoA carboxylase biotin carboxylase subunit, AccC_1
           [Staphylococcus aureus subsp. aureus str. JKD6008]
 gi|304340673|gb|EFM06606.1| acetyl-CoA carboxylase, biotin carboxylase [Staphylococcus aureus
           subsp. aureus ATCC BAA-39]
 gi|312829993|emb|CBX34835.1| biotin carboxylase (Acetyl-CoA carboxylase subunit A) (ACC)
           [Staphylococcus aureus subsp. aureus ECT-R 2]
 gi|315129887|gb|EFT85877.1| biotin carboxylase [Staphylococcus aureus subsp. aureus CGS03]
 gi|315198697|gb|EFU29025.1| biotin carboxylase [Staphylococcus aureus subsp. aureus CGS01]
 gi|320140508|gb|EFW32362.1| phosphoribosylglycinamide synthetase, ATP-grasp domain protein
           [Staphylococcus aureus subsp. aureus MRSA131]
 gi|320144046|gb|EFW35815.1| phosphoribosylglycinamide synthetase, ATP-grasp domain protein
           [Staphylococcus aureus subsp. aureus MRSA177]
 gi|329314281|gb|AEB88694.1| Carbamoyl-phosphate synthase L chain, ATP-binding protein
           [Staphylococcus aureus subsp. aureus T0131]
 gi|329728463|gb|EGG64900.1| putative acetyl-CoA carboxylase, biotin carboxylase subunit
           [Staphylococcus aureus subsp. aureus 21189]
          Length = 453

 Score = 80.9 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 41/220 (18%), Positives = 80/220 (36%), Gaps = 18/220 (8%)

Query: 56  NVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
           N +H  +G   E       +E   I +         +  DK+ ++Q V   GVPV P   
Sbjct: 75  NAIHPGYGFLSESTKFAQTVEEQGIAFIGPTKKTMEMMGDKITARQTVHHAGVPVIPGSN 134

Query: 111 --ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS----WNHGD 164
             +       +    I  P VIK   GG   GI ++KK + +     ++ S    +   D
Sbjct: 135 GAVNHVSEIENLAKDIGYPVVIKAASGGGGKGIRIVKKAEDLEKAFKEAKSEGKKYFDDD 194

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           ++ +E ++     +   VMGD   +   +            + +         A +  + 
Sbjct: 195 RVYVEAFIPVAKHVEVQVMGDGQDNYVHLGERDCSV----QRKNQKLIEESPCAALTEER 250

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            +++   A    +A   R     +FL    +   +++E+N
Sbjct: 251 RQQICNDAVKVARAANYRSAGTIEFLVTDTAH--YFIEMN 288


>gi|297530754|ref|YP_003672029.1| pyruvate carboxylase [Geobacillus sp. C56-T3]
 gi|297254006|gb|ADI27452.1| pyruvate carboxylase [Geobacillus sp. C56-T3]
          Length = 1147

 Score = 80.9 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 29/222 (13%), Positives = 78/222 (35%), Gaps = 22/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+           I +         +  DK++++      G+PV P    
Sbjct: 82  AIHPGYGFLSENIQFAKRCREEGIIFIGPNEEHLDMFGDKVKARHAAMKAGIPVIPGSDG 141

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS-----SSWNHGD 164
            +      +        P +IK   GG   G+ +++    +     ++     +++   D
Sbjct: 142 PVGGLEDVVRFAETHGYPIIIKAALGGGGRGMRIVRSKSEVKEAFERAKSEAKAAFGSDD 201

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLD 222
            + +E+ ++    +   ++GD   ++  +           ++        V P   +  +
Sbjct: 202 -VYVEKLIEKPKHIEVQILGDHEGNIVHLYE-----RDCSVQRRHQKVVEVAPSVSLSDE 255

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + K +   A    +++G       +FL      + +++E+N 
Sbjct: 256 LRKRICEAAVRLMRSVGYVNAGTVEFLV--SGDEFYFIEVNP 295


>gi|260174634|ref|ZP_05761046.1| phosphoribosylglycinamide formyltransferase 2 [Bacteroides sp. D2]
 gi|293369731|ref|ZP_06616307.1| phosphoribosylglycinamide formyltransferase 2 [Bacteroides ovatus
           SD CMC 3f]
 gi|315922898|ref|ZP_07919138.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|292635153|gb|EFF53669.1| phosphoribosylglycinamide formyltransferase 2 [Bacteroides ovatus
           SD CMC 3f]
 gi|313696773|gb|EFS33608.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 389

 Score = 80.9 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 47/255 (18%), Positives = 85/255 (33%), Gaps = 36/255 (14%)

Query: 31  FKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
           F+V  +     +  V+   +PD+    +     E         L +       ++ SA +
Sbjct: 46  FEVFDMLNGEELERVVKKHRPDIIVPEIEAIRTE--------RLYDFEKEGIQVVPSARA 97

Query: 91  MD-----KMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYVIKPLKGGSSLGIIV 143
           ++     K          G+               ++   I  P V+KPL   S  G  +
Sbjct: 98  VNFTMNRKAIRDLAAQELGLKTAKYFYAKTLEELKEAADKIGFPCVVKPLMSSSGKGQSL 157

Query: 144 IKKDQSIPLDLLQSSSWNHGD--QLLIEQYVDGIE----LTCGVMGDASLDVTEIA-VPK 196
           +K    +        S + GD  +L+IE+++        LT       +L    I  V K
Sbjct: 158 VKSADELEHAWEYGCSGSRGDIRELIIEEFIKFDSEITLLTVTQKNGPTLFCPPIGHVQK 217

Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256
              Y               PA I     KE + +A    +A+   G+   +F        
Sbjct: 218 GGDY----------RESFQPAHIDPAHLKEAEEMAEKVTRALTGAGLWGVEFFLS-HDNG 266

Query: 257 VFWLEINVQP---GM 268
           V++ E++ +P   GM
Sbjct: 267 VYFSELSPRPHDTGM 281


>gi|15607056|ref|NP_214438.1| carbamoyl-phosphate synthase large subunit [Aquifex aeolicus VF5]
 gi|22095487|sp|O67869|CARB1_AQUAE RecName: Full=Carbamoyl-phosphate synthase large chain, N-terminal
           section; AltName: Full=Carbamoyl-phosphate synthetase
           ammonia chain
 gi|2984303|gb|AAC07826.1| carbamoyl-phosphate synthase large subunit [Aquifex aeolicus VF5]
          Length = 557

 Score = 80.9 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 51/289 (17%), Positives = 108/289 (37%), Gaps = 38/289 (13%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQIDVDRS---------------------VGLV 45
           G ++E + S   G     AL+  G++V  ++ + +                     +  +
Sbjct: 21  GQAAEFDYS---GTQACKALKQEGYEVILVNSNPATIMTDPEMADKTYIEPLTADILEEI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   +PD     L G  G +  V+     +LE   +    +   A     D+   K+ + 
Sbjct: 78  IKKERPDALLPTLGGQTGLNLAVELYENGVLERYGVELIGANYEAIKKGEDRELFKETME 137

Query: 102 SCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
           S G+ V  S +V      + +   I  P +++P       G  V    +     L  +  
Sbjct: 138 SIGLKVPESAVVRSVEEGLKAVEKIGFPVILRPAFTLGGTGSSVAYNVEEFKEKLKVALE 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPA 217
            +   ++L+++ + G  E+   V+ D + +V  +   ++    ++       +S  V P 
Sbjct: 198 TSPIHEVLLDKSLIGWKEIEFEVVRDKADNVIIVCAIEN----FDPMGVHTGDSITVAPT 253

Query: 218 K-IPLDIYKEVQRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
           + +    Y+ ++  A    +AIG   G S   F   P S   + +E+N 
Sbjct: 254 QTLTDKEYQMLRDAAIAVIRAIGVDTGGSNIQFALSPESGDFYVIEMNP 302


>gi|298481150|ref|ZP_06999344.1| phosphoribosylglycinamide formyltransferase 2 [Bacteroides sp. D22]
 gi|298272724|gb|EFI14291.1| phosphoribosylglycinamide formyltransferase 2 [Bacteroides sp. D22]
          Length = 389

 Score = 80.6 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 45/255 (17%), Positives = 86/255 (33%), Gaps = 36/255 (14%)

Query: 31  FKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
           F+V  +     +  V+   +PD+    +     E         L +       ++ SA +
Sbjct: 46  FEVFDMLNGEELERVVKKHQPDIIVPEIEAIRTE--------RLYDFEKEGIQVVPSARA 97

Query: 91  MD-----KMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYVIKPLKGGSSLGIIV 143
           ++     K          G+               ++   +  P V+KPL   S  G  +
Sbjct: 98  VNFTMNRKAIRDLAAKELGLKTAKYFYAKTLDELKEAAAKVGFPCVVKPLMSSSGKGQSL 157

Query: 144 IKKDQSIPLDLLQSSSWNHGD--QLLIEQYVDGIE----LTCGVMGDASLDVTEIA-VPK 196
           +K    +        S + GD  +++IE+++        LT       +L    I  V K
Sbjct: 158 VKSADELEHAWEYGCSGSRGDIREVIIEEFIKFDSEITLLTVTQKNGPTLFCPPIGHVQK 217

Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256
              Y               PA I     KE + +A    +A+   G+   +F     +  
Sbjct: 218 GGDY----------RESFQPAHIDPAHLKEAEEMAEKVTRALTGAGLWGVEFFLSHENG- 266

Query: 257 VFWLEINVQP---GM 268
           V++ E++ +P   GM
Sbjct: 267 VYFSELSPRPHDTGM 281


>gi|227486986|ref|ZP_03917302.1| pyruvate carboxylase [Corynebacterium glucuronolyticum ATCC 51867]
 gi|227093060|gb|EEI28372.1| pyruvate carboxylase [Corynebacterium glucuronolyticum ATCC 51867]
          Length = 1154

 Score = 80.6 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/242 (15%), Positives = 82/242 (33%), Gaps = 23/242 (9%)

Query: 35  QIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKM 94
            +D+D  +  V      D  +   +G   E+  +        + +         L+ DK 
Sbjct: 85  YLDIDE-IMRVAKESGADAVYPG-YGFLSENPQLARECAENGLTFIGPTPEVLDLTGDKA 142

Query: 95  RSKQVVSSCGVPVCPSILVNRFTMDSQHLISP------PYVIKPLKGGSSLGIIVIKKDQ 148
            +       G+P+      +  T D   L+S       P  +K + GG   G+  +   +
Sbjct: 143 AAVHAAKEAGLPILED---SEATDDIDTLVSYAEGREFPLFVKAVAGGGGRGMRFVPDAE 199

Query: 149 SIPLDLLQSS-----SWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYE 203
            +     ++S     ++      L +  ++   +   ++ DA+ DV              
Sbjct: 200 HLRELAAEASREANSAFGDPSVYLEQAVINPQHIEVQILADATGDVI-----HLFERDCS 254

Query: 204 LKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
           ++        + P   +  ++  ++   A    + IG +G    +FL D     VF  E+
Sbjct: 255 VQRRHQKVVEIAPSPNLDPELRDQICADAVKFCKHIGYQGAGTVEFLVDEHGNHVFI-EM 313

Query: 263 NV 264
           N 
Sbjct: 314 NP 315


>gi|239826483|ref|YP_002949107.1| pyruvate carboxylase [Geobacillus sp. WCH70]
 gi|239806776|gb|ACS23841.1| pyruvate carboxylase [Geobacillus sp. WCH70]
          Length = 1147

 Score = 80.6 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 28/222 (12%), Positives = 76/222 (34%), Gaps = 22/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+           I +         +  DK++++      G+PV P    
Sbjct: 82  AIHPGYGFLSENIQFAKRCREEGIIFIGPNEEHLDMFGDKVKARHQAELAGIPVIPGSDG 141

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS-----SSWNHGD 164
            +      +        P +IK   GG   G+ +++    +     ++     +++   D
Sbjct: 142 PVHSLEEVVRFAETYGYPIIIKAALGGGGRGMRIVRSKSEVKEAYERAKSEAKAAFGSDD 201

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLD 222
            + +E+ ++    +   ++GD   ++  +           ++        V P   +  +
Sbjct: 202 -VYVEKLIERPKHIEVQILGDYEGNIVHLYE-----RDCSVQRRHQKVVEVAPSVSLSDE 255

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + + +   A    + +G       +FL        +++E+N 
Sbjct: 256 LRQRICEAAVKLMKNVGYVNAGTVEFLV--SGNDFYFIEVNP 295


>gi|325686994|gb|EGD29018.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus sanguinis
           SK72]
          Length = 455

 Score = 80.6 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 77/220 (35%), Gaps = 16/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  FG   E+     + E + I +         +  DK+ ++  +    VPV P    
Sbjct: 77  AIHPGFGFLSENSKFATMCEEVGIKFIGPSGAVMDMMGDKINARAQMIKAKVPVIPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
            +  +   ++    I  P ++K   GG   GI  ++K + +         ++ +      
Sbjct: 137 EVHTSEEALEVAEKIGYPVMLKASAGGGGKGIRKVEKAEDLVAAFESASSEAKAAFGNGA 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+ +     +   ++ D    V  +            K             I   + 
Sbjct: 197 MYMERVIYPARHIEVQILADQQGHVVHLGERDCSLQRNNQKVL----EESPSVAIGKTLR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +++   A  A Q++G       +FL D    + +++E+N 
Sbjct: 253 QQIGEAAVRAAQSVGYENAGTIEFLLDEAKGEFYFMEMNT 292


>gi|237718131|ref|ZP_04548612.1| phosphoribosylglycinamide formyltransferase 2 [Bacteroides sp.
           2_2_4]
 gi|229452552|gb|EEO58343.1| phosphoribosylglycinamide formyltransferase 2 [Bacteroides sp.
           2_2_4]
          Length = 388

 Score = 80.6 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 47/255 (18%), Positives = 85/255 (33%), Gaps = 36/255 (14%)

Query: 31  FKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
           F+V  +     +  V+   +PD+    +     E         L +       ++ SA +
Sbjct: 45  FEVFDMLNGEELERVVKKHRPDIIVPEIEAIRTE--------RLYDFEKEGIQVVPSARA 96

Query: 91  MD-----KMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYVIKPLKGGSSLGIIV 143
           ++     K          G+               ++   I  P V+KPL   S  G  +
Sbjct: 97  VNFTMNRKAIRDLAAQELGLKTAKYFYAKTLEELKEAADKIGFPCVVKPLMSSSGKGQSL 156

Query: 144 IKKDQSIPLDLLQSSSWNHGD--QLLIEQYVDGIE----LTCGVMGDASLDVTEIA-VPK 196
           +K    +        S + GD  +L+IE+++        LT       +L    I  V K
Sbjct: 157 VKSADELEHAWEYGCSGSRGDIRELIIEEFIKFDSEITLLTVTQKNGPTLFCPPIGHVQK 216

Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256
              Y               PA I     KE + +A    +A+   G+   +F        
Sbjct: 217 GGDY----------RESFQPAHIDPAHLKEAEEMAEKVTRALTGAGLWGVEFFLS-HDNG 265

Query: 257 VFWLEINVQP---GM 268
           V++ E++ +P   GM
Sbjct: 266 VYFSELSPRPHDTGM 280


>gi|22299875|ref|NP_683122.1| carbamoyl phosphate synthase large subunit [Thermosynechococcus
           elongatus BP-1]
 gi|22296060|dbj|BAC09884.1| carbamoyl-phosphate synthase pyrimidine-specific large chain
           [Thermosynechococcus elongatus BP-1]
          Length = 1100

 Score = 80.6 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 60/279 (21%), Positives = 105/279 (37%), Gaps = 36/279 (12%)

Query: 18  SGKACASALEDAGFKVSQID------------VDRS---------VGLVLAHLKPDLAFN 56
           SG     AL + G++V  I+             DR+         V  V+A  +PD    
Sbjct: 29  SGTQACKALREEGYEVILINSNPATIMTDPEIADRTYIEPLTPEMVEKVIAAERPDALLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  V      +L+   +    + + A  ++ D+   K+ +   GV VCPS L
Sbjct: 89  TMGGQTALNLAVALAKSGVLDRYGVELIGAKLPAIEMAEDRKLFKEAMQRIGVAVCPSGL 148

Query: 113 ---VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
              +      +Q +   P +I+P       G  +    +            +   Q+LIE
Sbjct: 149 ANTLEEARAIAQEIGVYPLIIRPAFTLGGTGGGIAYNQEEFEAIATAGLEASPVSQILIE 208

Query: 170 QYVDG-IELTCGVMGDASLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPAK-IPLDIYKE 226
           Q + G  E    VM D + +V  I   ++ D           +S  V PA+ +    Y+ 
Sbjct: 209 QSLIGWKEYELEVMRDMADNVVIICSIENIDPMGIHT----GDSITVAPAQTLTDKEYQR 264

Query: 227 VQRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           ++  A    + IG   G S   F  +P + +V  +E+N 
Sbjct: 265 LRDAAIKIIREIGVETGGSNIQFAVNPETGEVIVIEMNP 303



 Score = 60.9 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 34/233 (14%), Positives = 89/233 (38%), Gaps = 17/233 (7%)

Query: 68  VQAIL----ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQ 121
           +Q  L    + L      +   +  ++ D+ R ++++    +P  P+     +   +   
Sbjct: 669 LQRYLQQQGDRLGTQIWGTSPDSIDIAEDRERFEKILRELNIPQPPNGTARSYAEALSIA 728

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCG 180
             I  P V++P        + ++  +  +   +  +     G  +LI++Y++  IE+   
Sbjct: 729 ERIGYPVVVRPSYVLGGRAMEIVYSNGELERYMNAAVQVEPGRPILIDKYLENAIEVDVD 788

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIG 239
            + DA+  V    + +   +  +    S +S   LP + +   + + ++  +    QA+ 
Sbjct: 789 AIADATGTVVIGGIME---HIEQAGIHSGDSACSLPTQSLSPAVLQTIRTWSIALAQALK 845

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
             G+   +        +V+ LE N +   T     P ++   G    ++   +
Sbjct: 846 VVGL--MNLQLAVQGDQVYILEANPRASRT----VPFVSKAIGIPLAKVAARL 892


>gi|295425248|ref|ZP_06817951.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus
           amylolyticus DSM 11664]
 gi|295065024|gb|EFG55929.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus
           amylolyticus DSM 11664]
          Length = 1060

 Score = 80.6 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 43/297 (14%), Positives = 97/297 (32%), Gaps = 38/297 (12%)

Query: 22  CASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH----GN----FGE 64
           C  AL+  G++   I         D   S  L    L  +   NV      G     FG 
Sbjct: 577 CVKALQKMGYEAIVINSNPETVSTDFSISDKLYFEPLTLEDVLNVCDLEKPGGVIVQFGG 636

Query: 65  DGLV--QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDS 120
              +   A LE   I    + +     + D+    +++    +     +        +++
Sbjct: 637 QTSINLAAGLEKHGIKILGTKVKDVNRAEDRELFDEIIKDLHLNQPKGLTATTHEGVLEA 696

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P +++P        + ++     +   L           +L++ Y+DG E    
Sbjct: 697 ADRLGYPVLVRPSYVLGGKAMEIVYSKDELEEYLHDHVDIAADHPILVDDYLDGRECDVD 756

Query: 181 VMGDAS---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQ 236
            + D     L      +  +  +S        +S  V P +    ++ +++  +      
Sbjct: 757 AICDGKTVLLPGIMEHIEHAGVHS-------GDSMAVYPPQTFTDEVKEKITDVTRKLAL 809

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            + C GI    F+      +V+ +E+N +   T     P ++   G    ++   ++
Sbjct: 810 KLNCIGIMNIQFIVR--DGQVYVIEVNPRASRT----VPFLSKITGIEMAQVASRVI 860



 Score = 77.9 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 52/286 (18%), Positives = 104/286 (36%), Gaps = 33/286 (11%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI---------DVD------------RSVGLV 45
           G ++E + S   G     AL + G++V  +         D               SV  +
Sbjct: 21  GQAAEFDYS---GTQACLALREEGYEVVLVNSNPATIMTDTTIADKVYIEPLTVESVSRI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +    PD     L G  G +  +      IL+ L I    + + +   + D+ + K++  
Sbjct: 78  IRQEYPDAILPTLGGQVGLNMALALSKTGILDELHIELLGTKLDSIEQAEDREKFKELCK 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
           S G PV PS+ V+  +  +D    I  P +++P       G  + K  + +         
Sbjct: 138 SLGEPVPPSLTVHHVQEALDFADKIGYPIIVRPAFTMGGTGGGICKNREELARICKNGLE 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   + LIEQ + G  E+   VM D+  +   +   ++  +     ++  +        
Sbjct: 198 LSPVTECLIEQSIAGYKEVEFEVMRDSHDNAMIVCCMEN--FDPVGIHTGDSIVFSPSQT 255

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +    Y+ ++  +    +A+   G        DP S     +E+N 
Sbjct: 256 LSDKEYQMLRDCSLRLIRALKIEGGCNVQLALDPNSFNYDVIEVNP 301


>gi|282883128|ref|ZP_06291727.1| pyruvate carboxylase [Peptoniphilus lacrimalis 315-B]
 gi|281296940|gb|EFA89437.1| pyruvate carboxylase [Peptoniphilus lacrimalis 315-B]
          Length = 1141

 Score = 80.6 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 48/243 (19%), Positives = 91/243 (37%), Gaps = 24/243 (9%)

Query: 35  QIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSM 91
            +D+D  + L  A      A + +H  +G   E+    A  E   I +      A     
Sbjct: 63  YLDIDEIIKLAKAK-----AVDAIHPGYGFLAENAEFAAKCEKEGITFIGPSSSAMEALG 117

Query: 92  DKMRSKQVVSSCGVPVCPSILV----NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147
           DK++SK V ++  VP  P I      +    D       P +IK   GG   G+ V+  +
Sbjct: 118 DKIKSKIVANNAKVPTIPGIQKPIENDEQAKDFAKEAGYPVIIKASFGGGGRGMRVVNNE 177

Query: 148 QSIPLDL----LQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSY 202
           + +   L     ++      D + IE+Y++    +   ++GD   ++  +          
Sbjct: 178 KELIEKLHSAKSEAKQAFGNDAIFIEKYLEKPKHIEVQILGDKFGNIVHLFERDCSIQRR 237

Query: 203 ELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
             K          PA  +P ++ + + + A     +IG       +FL D      +++E
Sbjct: 238 HQK-----VIEFTPAFSLPKNVRESICQDALKIANSIGYTNAGTVEFLVDKNLNH-YFIE 291

Query: 262 INV 264
           +N 
Sbjct: 292 VNP 294


>gi|258539534|ref|YP_003174033.1| pyruvate carboxylase [Lactobacillus rhamnosus Lc 705]
 gi|257151210|emb|CAR90182.1| Pyruvate carboxylase [Lactobacillus rhamnosus Lc 705]
          Length = 1145

 Score = 80.6 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/245 (13%), Positives = 84/245 (34%), Gaps = 25/245 (10%)

Query: 33  VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASAL 89
            + +D+D  +  +      D     +H  +G   E+      +    + +    +    +
Sbjct: 58  AAYLDMD-DIIRIAKQSGAD----TIHPGYGLLSENATFARKVRAAGLTFVGPRLELLDV 112

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFT----MDSQHLISPPYVIKPLKGGSSLGIIVIK 145
             DK+ +K+     G+   P             D       P ++K   GG   G+ ++ 
Sbjct: 113 FGDKVAAKEAAHKAGLTTIPGTPEPTRDFTEIQDFTAKHGFPVMLKAASGGGGKGMRIVH 172

Query: 146 KDQSIPL----DLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFY 200
            +  +       + ++ +    D++ +E+Y+     +   V+GD    +           
Sbjct: 173 SEAELEAVYQNAVNEAKASFGDDRMYVEKYIASAKHVEVQVLGDEHGHLL-----HLFER 227

Query: 201 SYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
              ++        + PA  +PL +   + + A     ++        +FL D    + ++
Sbjct: 228 DCSVQRRQQKVVEIAPAVALPLALRNRICQSAVDLMASLHYENAGTVEFLVD--GDQYYF 285

Query: 260 LEINV 264
           +E+N 
Sbjct: 286 IEVNP 290


>gi|227541852|ref|ZP_03971901.1| pyruvate carboxylase [Corynebacterium glucuronolyticum ATCC 51866]
 gi|227182295|gb|EEI63267.1| pyruvate carboxylase [Corynebacterium glucuronolyticum ATCC 51866]
          Length = 1154

 Score = 80.6 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/242 (15%), Positives = 82/242 (33%), Gaps = 23/242 (9%)

Query: 35  QIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKM 94
            +D+D  +  V      D  +   +G   E+  +        + +         L+ DK 
Sbjct: 85  YLDIDE-IMRVAKESGADAVYPG-YGFLSENPQLARECAENGLTFIGPTPEVLDLTGDKA 142

Query: 95  RSKQVVSSCGVPVCPSILVNRFTMDSQHLISP------PYVIKPLKGGSSLGIIVIKKDQ 148
            +       G+P+      +  T D   L+S       P  +K + GG   G+  +   +
Sbjct: 143 AAVHAAKEAGLPILED---SEATDDIDTLVSYAEGREFPLFVKAVAGGGGRGMRFVPDAE 199

Query: 149 SIPLDLLQSS-----SWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYE 203
            +     ++S     ++      L +  ++   +   ++ DA+ DV              
Sbjct: 200 HLRELAAEASREANSAFGDPSVYLEQAVINPQHIEVQILADATGDVI-----HLFERDCS 254

Query: 204 LKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
           ++        + P   +  ++  ++   A    + IG +G    +FL D     VF  E+
Sbjct: 255 VQRRHQKVVEIAPSPNLDPELRDQICADAVKFCKHIGYQGAGTVEFLVDEHGNHVFI-EM 313

Query: 263 NV 264
           N 
Sbjct: 314 NP 315


>gi|210635500|ref|ZP_03298581.1| hypothetical protein COLSTE_02520 [Collinsella stercoris DSM 13279]
 gi|210158355|gb|EEA89326.1| hypothetical protein COLSTE_02520 [Collinsella stercoris DSM 13279]
          Length = 420

 Score = 80.6 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/210 (17%), Positives = 80/210 (38%), Gaps = 25/210 (11%)

Query: 93  KMRSKQVVSSCGVPVCPSILVNRFTMDSQ---HLISPPYVIKPLKGGS--------SLGI 141
           K R  Q+    G+P   ++ ++     +Q      + P + KP    +           +
Sbjct: 129 KERFYQICEEIGIPYPKTVFLDCGDKTAQVDDGGFTYPVIAKPSNSAAWHYAEFPGQKKV 188

Query: 142 IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG---DASLDVTEIAVPKSD 198
            +I+  + +     Q    ++   L++++++ G +    ++    DA+ D   +   +  
Sbjct: 189 YLIRSREELEALYRQLQDTSYDKLLIVQEFIPGDDTQIRILSTYVDAACDPVFMVGGRVV 248

Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
              +        +    PA I  +   +V   A    + +G RG++  D  FD       
Sbjct: 249 LEDHSP------TAIGNPAVIVSEQLDQVSDDALRFMRHVGYRGMANFDVKFDERDGTYK 302

Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           + EIN +PG    S+F   A   G +F ++
Sbjct: 303 FFEINTRPG--RSSMFVHQA---GVNFAQV 327


>gi|89069341|ref|ZP_01156700.1| methylcrotonyl-CoA carboxylase, alpha subunit [Oceanicola
           granulosus HTCC2516]
 gi|89045108|gb|EAR51179.1| methylcrotonyl-CoA carboxylase, alpha subunit [Oceanicola
           granulosus HTCC2516]
          Length = 665

 Score = 80.6 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 79/222 (35%), Gaps = 23/222 (10%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
           +G   E+      +E   + +      A      K  +K ++   GVPV P    +    
Sbjct: 82  YGFLSENAGFVEAVEAAGLVFIGPPAGAIRAMGLKDAAKALMEEAGVPVVPGY--HGADQ 139

Query: 119 DSQHL------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQLLI 168
           D + L      I  P +IK   GG   G+ ++++       L     ++ +       LI
Sbjct: 140 DPERLAAEAGRIGYPVLIKARAGGGGKGMRLVERPAEFAAALEGARREAQASFGDGACLI 199

Query: 169 EQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKE 226
           E+YV     +   V GDA  +V              L+          PA  +P  +   
Sbjct: 200 EKYVTRPRHIEIQVFGDAHGNVV-----HLFERDCSLQRRHQKVIEEAPAPDMPEAVRAA 254

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLS----RKVFWLEINV 264
           + R A  A +AIG  G    +F+ D          +++E+N 
Sbjct: 255 MGRAAVEAAKAIGYEGAGTVEFIVDGSGPLREDGFWFMEMNT 296


>gi|330965194|gb|EGH65454.1| acetyl-CoA carboxylase biotin carboxylase subunit [Pseudomonas
           syringae pv. actinidiae str. M302091]
          Length = 330

 Score = 80.6 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 80/221 (36%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+      +E   + +         +  DK+ +K+ +   GVP  P    
Sbjct: 77  AIHPGYGFLSENAAFAERIEQAGLTFIGPSAACIRVMGDKVAAKRAMREAGVPCVPGPDT 136

Query: 111 --ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GD 164
                 +  +     I  P ++K   GG   G+ V++++Q +   +  +S          
Sbjct: 137 SMPADPQGILAIARDIGYPVIVKAAGGGGGRGMRVVQEEQQLLDAIALTSEEARRAFGNP 196

Query: 165 QLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           +L IE+++     +   V+ DA  +   +            K             I   +
Sbjct: 197 ELYIEKFLGQPRHVEIQVLCDAYGNAVWLGSRDCSMQRRHQKVL----EEAPAPGIDAAL 252

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              V      A + IG +G+   +FLF   + + +++E+N 
Sbjct: 253 MSRVGERCAQACRQIGYQGVGTFEFLF--ENDEFYFIEMNT 291


>gi|323350383|ref|ZP_08086047.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus sanguinis
           VMC66]
 gi|322123456|gb|EFX95132.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus sanguinis
           VMC66]
 gi|332359173|gb|EGJ36994.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus sanguinis
           SK49]
          Length = 455

 Score = 80.6 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 77/220 (35%), Gaps = 16/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  FG   E+     + E + I +         +  DK+ ++  +    VPV P    
Sbjct: 77  AIHPGFGFLSENSKFATMCEEVGIKFIGPSGAVMDMMGDKINARAQMIKAKVPVIPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
            +  +   ++    I  P ++K   GG   GI  ++K + +         ++ +      
Sbjct: 137 EVHTSEEALEVAEKIGYPVMLKASAGGGGKGIRKVEKAEDLVAAFESASSEAKAAFGNGA 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+ +     +   ++ D    V  +            K             I   + 
Sbjct: 197 MYMERVIYPARHIEVQILADQQGHVVHLGERDCSLQRNNQKVL----EESPSVAIGKTLR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +++   A  A Q++G       +FL D    + +++E+N 
Sbjct: 253 QQIGEAAVRAAQSVGYENAGTIEFLLDEAKGEFYFMEMNT 292


>gi|166714159|ref|ZP_02245366.1| biotin carboxylase [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 675

 Score = 80.6 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 74/221 (33%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H  +G   E+           I +      A     DK  +K ++   GVP+ P    
Sbjct: 90  AIHPGYGFLSENATFAEACAHAGIVFIGPPAAAIRAMGDKSAAKALMQRAGVPLTPGYHG 149

Query: 113 ---VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
                 F       I  P +IK   GG   G+  +    +    L     ++ S      
Sbjct: 150 DEQAPAFLRAQADAIGYPVLIKASAGGGGKGMRRVDASAAFEDALASCQREAQSAFGNAH 209

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           +L+E+YV+    +   V GD     T   V         ++          PA  +    
Sbjct: 210 VLVEKYVERPRHIEIQVFGD-----THGEVVHLFERDCSVQRRHQKVLEEAPAPGMSEAR 264

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              + + A  A QA+G  G    +F+  P     +++E+N 
Sbjct: 265 RAAMGKAAVDAAQAVGYVGAGTVEFIAGP-DGDFYFMEMNT 304


>gi|153005851|ref|YP_001380176.1| pyruvate carboxylase [Anaeromyxobacter sp. Fw109-5]
 gi|152029424|gb|ABS27192.1| pyruvate carboxylase [Anaeromyxobacter sp. Fw109-5]
          Length = 1149

 Score = 80.6 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/238 (15%), Positives = 80/238 (33%), Gaps = 23/238 (9%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRS 96
             +  +   L+ D     +H  +G   E+       +   I +            DK+  
Sbjct: 68  EEIVALAKRLEVD----AIHPGYGFLSENPEFAEACDRAGIVFVGPTPEMQRRLGDKVAG 123

Query: 97  KQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152
           ++     GVPV P     I  +   +        P +IK   GG   G+ V +  + +  
Sbjct: 124 RKAAQGAGVPVVPGTAEPIKHDEEALLFAREHGYPIIIKASAGGGGRGMRVARNQRELVE 183

Query: 153 DLL----QSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYS 207
            L+    ++ +      + +E+Y++    +   V+GD   ++  +            K  
Sbjct: 184 GLVSARSEAGAAFGNPAVFLERYIERPKHIEVQVLGDHHGNLVHLFERDCSIQRRHQK-- 241

Query: 208 SLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
                   P+  +       +   A    +++  R     +FL D   R  +++E+N 
Sbjct: 242 ---VVEFAPSLALSEAQRAAICEDALKIARSVSYRNAGTVEFLVDREGRH-YFIEVNP 295


>gi|148557591|ref|YP_001265173.1| acetyl-CoA carboxylase, biotin carboxylase [Sphingomonas wittichii
           RW1]
 gi|148502781|gb|ABQ71035.1| acetyl-CoA carboxylase, biotin carboxylase [Sphingomonas wittichii
           RW1]
          Length = 450

 Score = 80.6 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 77/220 (35%), Gaps = 18/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+ L   I+E   + +            DK+ +K   +  G+P+ P    
Sbjct: 78  AIHPGYGFLSENALFAEIVESHNLIWIGPKPEHIRTMGDKIEAKATAAKLGLPLVPGSPG 137

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSWNHGDQ 165
            +            I  P +IK   GG   G+ V+ ++  +         ++ +      
Sbjct: 138 PLTSIEEAKAVAAQIGYPVLIKAASGGGGRGMKVVPEETQLETLMAQASSEAKAAFGDGT 197

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+Y+ D   +   V GD + +   +            K             I     
Sbjct: 198 VYMEKYLADPRHIEFQVFGDGNGNAIHVGERDCSLQRRHQKVL----EEAPSPVISHAQR 253

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            E+  +   A   +G RG    +FL+   + + +++E+N 
Sbjct: 254 AEMGTIVARAMADMGYRGAGTIEFLY--ENGEFYFIEMNT 291


>gi|332977560|gb|EGK14330.1| acetyl-CoA carboxylase, biotin carboxylase [Desmospora sp. 8437]
          Length = 450

 Score = 80.6 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 89/220 (40%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+     +     I +      A     DK  +++ + + GVPV P    
Sbjct: 78  AIHPGYGFLAENADFAELCAACNITFIGPDPQAIVKMGDKTTARETMKAAGVPVVPGTEG 137

Query: 112 LVNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGDQ 165
           ++    +  ++   I  P ++K   GG   G+ V+  ++ +   +     ++++      
Sbjct: 138 VIEDLDIAVETAREIGYPVIVKATAGGGGKGMRVVHTEEELKRAIQMAQQEAAANFGNPG 197

Query: 166 LLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E++ V+   +   V+ D+  +   +        S + +Y  L      PA +   + 
Sbjct: 198 VYLEKFLVEPRHIEIQVLADSHGNTIHLGERD---CSIQRRYQKLVEEAPSPA-LDPSLR 253

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +++ + A  A QA+   G    +FL D      +++E+N 
Sbjct: 254 EKMGQAAVAAAQAVNYSGAGTVEFLLDKEGN-FYFMEMNT 292


>gi|332365751|gb|EGJ43509.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus sanguinis
           SK1059]
          Length = 455

 Score = 80.6 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 77/220 (35%), Gaps = 16/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  FG   E+     + E + I +         +  DK+ ++  +    VPV P    
Sbjct: 77  AIHPGFGFLSENSKFATMCEEVGIKFIGPSGAVMDMMGDKINARAQMIKAKVPVIPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
            +  +   ++    I  P ++K   GG   GI  ++K + +         ++ +      
Sbjct: 137 EVHTSEEALEVAEKIGYPVMLKASAGGGGKGIRKVEKAEDLVAAFESASSEAKAAFGNGA 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+ +     +   ++ D    V  +            K             I   + 
Sbjct: 197 MYMERVIYPARHIEVQILADQQGHVVHLGERDCSLQRNNQKVL----EESPSVAIGKTLR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +++   A  A Q++G       +FL D    + +++E+N 
Sbjct: 253 QQIGEAAVRAAQSVGYENAGTIEFLLDEAKGEFYFMEMNT 292


>gi|307209408|gb|EFN86425.1| Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial
           [Harpegnathos saltator]
          Length = 652

 Score = 80.6 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 77/221 (34%), Gaps = 25/221 (11%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+     + +   + +      A      K  SK ++   GVP+      
Sbjct: 60  AIHPGYGFLSENTEFAELCQKENVIFIGPPASAIRDMGIKNTSKAIMMKAGVPIIEGYHG 119

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS-----SWNHGD 164
           +  + +        I  P +IK ++GG   G+ +  K+      L  +      ++    
Sbjct: 120 DDQSNETLLAEARKIGFPLMIKAVRGGGGKGMRIALKESDFTEALESARTESQKAFG-DS 178

Query: 165 QLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            +L+E+YV +   +   +  D           K     Y  +             I  ++
Sbjct: 179 AVLLEKYVAEPRHVEVQIFAD-----------KYGNTVYLFERDCSVQRRHQKPGISQEL 227

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +++   A  A +A+G  G    +F+ D       ++E+N 
Sbjct: 228 RQKLGEAAVCAAKAVGYVGAGTVEFIMDRNDHSFHFMEMNT 268


>gi|265750481|ref|ZP_06086544.1| phosphoribosylglycinamide formyltransferase 2 [Bacteroides sp.
           3_1_33FAA]
 gi|263237377|gb|EEZ22827.1| phosphoribosylglycinamide formyltransferase 2 [Bacteroides sp.
           3_1_33FAA]
          Length = 389

 Score = 80.6 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 51/255 (20%), Positives = 88/255 (34%), Gaps = 36/255 (14%)

Query: 31  FKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
           F+V  +    ++  V+A  KPD+    +     E         L  +      ++ SA +
Sbjct: 46  FEVFSMLDGDALDAVVAKHKPDIIVPEIEAIRTE--------RLYHLEQEGIQVVPSARA 97

Query: 91  MD-----KMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYVIKPLKGGSSLGIIV 143
           ++     K          G+               ++   I  P V+KPL   S  G  +
Sbjct: 98  VNFTMNRKAIRDLAAKELGLKTAKYFYAKSLEELKEAAKEIGFPCVVKPLMSSSGKGQSL 157

Query: 144 IKKDQSIPLDLLQSSSWNHGD--QLLIEQYVDGIE----LTCGVMGDASLDVTEIA-VPK 196
           +K    +          + GD  +L+IE+++        LT       +L    I  V K
Sbjct: 158 VKSADELEQAWHYGCEGSRGDIKELIIEEFIKFDSEITLLTVTQKNGPTLFCPPIGHVQK 217

Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256
              Y               PA I  +  KE QR+A     A+   GI   +F     +  
Sbjct: 218 GGDY----------RESFQPAHIDPEHLKEAQRMADKVTAALTGAGIWGVEFFLSHENG- 266

Query: 257 VFWLEINVQP---GM 268
           V++ E++ +P   GM
Sbjct: 267 VYFSELSPRPHDTGM 281


>gi|218291430|ref|ZP_03495356.1| Carbamoyl-phosphate synthase L chain ATP-binding [Alicyclobacillus
           acidocaldarius LAA1]
 gi|218238720|gb|EED05938.1| Carbamoyl-phosphate synthase L chain ATP-binding [Alicyclobacillus
           acidocaldarius LAA1]
          Length = 446

 Score = 80.6 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 73/220 (33%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+           I +      A A    K+ +++ V   G PV P    
Sbjct: 77  AIHPGYGLLSENADFARAAMERGIRFIGPSPEAIAAMGSKVAARETVKRAGAPVVPGSEG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGDQ 165
            +      +     I  P ++K   GG  +G+ V+  ++ +         ++ ++    +
Sbjct: 137 AVASVEEAVRIAAEIGYPVMLKASYGGGGIGMQVVNSEEELRKAFASNSARAKAYFGNGE 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+ V     +   V+ D       +   +        K             +   + 
Sbjct: 197 MFLEKRVQRPRHVEIQVLCDGHGHGVYLWERECSIQRRHQK----VVEEAPSPFVDEALR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +   A    +AIG       +FL D      ++LE+N 
Sbjct: 253 RRMGEAALAICRAIGYENAGTLEFLVDEEKN-FYFLEMNT 291


>gi|217034475|ref|ZP_03439887.1| hypothetical protein HP9810_890g20 [Helicobacter pylori 98-10]
 gi|216943077|gb|EEC22554.1| hypothetical protein HP9810_890g20 [Helicobacter pylori 98-10]
          Length = 455

 Score = 80.6 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/225 (16%), Positives = 78/225 (34%), Gaps = 14/225 (6%)

Query: 49  LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
            + D  F   +G   E+     I     + +        AL  DK ++K V+   G+PV 
Sbjct: 84  FEADAIFPG-YGFLSENQNFVEICSHHSLEFIGPSAKVMALMSDKSKAKSVMKEAGMPVI 142

Query: 109 PS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSW 160
                 +   +   +    I  P +IK   GG   G+ V++    +         ++ S 
Sbjct: 143 EGSDGLLKSYQEAEEIADKIGYPVIIKAAAGGGGRGMRVVEDKSKLKNLYLAAETEALSA 202

Query: 161 NHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI 219
                + +E+++     +   ++ D   +V  +          + K             +
Sbjct: 203 FGDGSVYLEKFINKPKHIEVQILADKHGNVIHVGERDCSVQRRQQKLI----EETPAVVL 258

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              + K +   A  A + IG  G    +FL D   +  +++E+N 
Sbjct: 259 EEGVRKRLLDTAIKAAKYIGYVGAGTFEFLLDSNMKDFYFMEMNT 303


>gi|326330385|ref|ZP_08196695.1| acetyl/propionyl-CoA carboxylase, alpha subunit [Nocardioidaceae
           bacterium Broad-1]
 gi|325951922|gb|EGD43952.1| acetyl/propionyl-CoA carboxylase, alpha subunit [Nocardioidaceae
           bacterium Broad-1]
          Length = 580

 Score = 80.6 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 39/213 (18%), Positives = 80/213 (37%), Gaps = 17/213 (7%)

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT------ 117
           E+           I +      A      K  +KQ+++  GVPV P I+++         
Sbjct: 1   ENADFAEACAEAGITFIGPPPAAIRAMGSKTAAKQLMAEAGVPVLPGIVIDENQEFGADL 60

Query: 118 -MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS-----SSWNHGDQLLIEQY 171
              +   I  P ++K   GG   G+ +++    +   +  +     S++ +G   L    
Sbjct: 61  AERAAGDIGFPLLVKAAYGGGGRGMRIVESADELESTVAAARREAVSAFGNGAVFLERLV 120

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           +    +   V  D+   V  +   +    S + +Y  +         +  ++  E+   A
Sbjct: 121 IRPRHIEVQVFADSQGQVVHLFERE---CSIQRRYQKI-IEEAPSPVVDEELRSELGAAA 176

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             A +AIG  G    +F+ DP   + ++LE+N 
Sbjct: 177 VAAAKAIGYVGAGTVEFVMDPS-GEFYFLEVNT 208


>gi|325696883|gb|EGD38770.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus sanguinis
           SK160]
          Length = 455

 Score = 80.6 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 77/220 (35%), Gaps = 16/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  FG   E+     + E + I +         +  DK+ ++  +    VPV P    
Sbjct: 77  AIHPGFGFLSENSKFATMCEEVGIKFIGPSGAVMDMMGDKINARAQMIKAKVPVIPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
            +  +   ++    I  P ++K   GG   GI  ++K + +         ++ +      
Sbjct: 137 EVHTSEEALEVAEKIGYPVMLKASAGGGGKGIRKVEKAEDLVAAFESASSEAKAAFGNGA 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+ +     +   ++ D    V  +            K             I   + 
Sbjct: 197 MYMERVIYPARHIEVQILADQQGHVVHLGERDCSLQRNNQKVL----EESPSVAIGKTLR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +++   A  A Q++G       +FL D    + +++E+N 
Sbjct: 253 QQIGEAAVRAAQSVGYENAGTIEFLLDEAKGEFYFMEMNT 292


>gi|325688704|gb|EGD30713.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus sanguinis
           SK115]
          Length = 455

 Score = 80.6 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 77/220 (35%), Gaps = 16/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  FG   E+     + E + I +         +  DK+ ++  +    VPV P    
Sbjct: 77  AIHPGFGFLSENSKFATMCEEVGIKFIGPSGAVMDMMGDKINARAQMIKAKVPVIPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
            +  +   ++    I  P ++K   GG   GI  ++K + +         ++ +      
Sbjct: 137 EVHTSEEALEVAEKIGYPVMLKASAGGGGKGIRKVEKAEDLVAAFESASSEAKAAFGNGA 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+ +     +   ++ D    V  +            K             I   + 
Sbjct: 197 MYMERVIYPARHIEVQILADQQGHVVHLGERDCSLQRNNQKVL----EESPSVAIGKTLR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +++   A  A Q++G       +FL D    + +++E+N 
Sbjct: 253 QQIGEAAVRAAQSVGYENAGTIEFLLDEAKGEFYFMEMNT 292


>gi|227326258|ref|ZP_03830282.1| urea amidolyase [Pectobacterium carotovorum subsp. carotovorum
           WPP14]
          Length = 1204

 Score = 80.6 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/204 (15%), Positives = 68/204 (33%), Gaps = 14/204 (6%)

Query: 70  AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN---RFTMDSQHLISP 126
           A  E   I +             K R++++ ++ GVP+ P   +       + +   I  
Sbjct: 93  AACEKAGIAFVGPTAQQIGEFGLKHRARELAAAAGVPMTPGTPLLASLEDALAAAEDIGY 152

Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQLLIEQYVD-GIELTCGV 181
           P ++K   GG  +G+       ++             +     + +E+ +D    +   +
Sbjct: 153 PIMLKSTAGGGGIGLTRCADAVALRAAWESVRRLGEQFFSDAGVFLERCIDRARHVEVQI 212

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGC 240
            GD    V  +           L+  +       PA  +P      +   A    + +  
Sbjct: 213 FGDGKGRVVALGE-----RDCSLQRRNQKVVEETPAPHLPDATRAALLESAVKLGELVSY 267

Query: 241 RGISRSDFLFDPLSRKVFWLEINV 264
           R     ++++D      F+LE+N 
Sbjct: 268 RSAGTVEYIYDAERDAFFFLEVNT 291


>gi|15896804|ref|NP_350153.1| biotin carboxylase [Clostridium acetobutylicum ATCC 824]
 gi|15026665|gb|AAK81493.1|AE007853_8 Biotin carboxylase [Clostridium acetobutylicum ATCC 824]
 gi|325510978|gb|ADZ22614.1| biotin carboxylase [Clostridium acetobutylicum EA 2018]
          Length = 447

 Score = 80.6 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 84/220 (38%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  FG   E+G    +     I +            +K ++++++   GVPV P    
Sbjct: 77  AIHPGFGFLSENGKFAKMCSECNIAFIGPDAETIENMGNKAKAREIMIKAGVPVVPGCEG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL----DLLQSSSWNHGDQ 165
            I      +     I  P ++K   GG   GI ++++++ +         ++ +    D 
Sbjct: 137 TIDSEDQALKEATRIGYPVMLKASAGGGGRGIRIVREEKDLISSFRNAKSEAKAAFGDDS 196

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E++++    +   ++GD+  +V  +            K             +  ++ 
Sbjct: 197 MYMEKFIEEPRHVEFQILGDSFGNVVYLGERDCSIQRRNQKVL----EEAPSPVMTEELR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +E+   A  A +A+  +     +FL D      +++E+N 
Sbjct: 253 REMGEAAVRAAKAVNYKNAGTIEFLLDKHGN-YYFMEMNT 291


>gi|33599600|ref|NP_887160.1| pyruvate carboxylase [Bordetella bronchiseptica RB50]
 gi|33567196|emb|CAE31110.1| putative pyruvate carboxylase [Bordetella bronchiseptica RB50]
          Length = 1167

 Score = 80.6 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 32/221 (14%), Positives = 76/221 (34%), Gaps = 18/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+           I +            +K+ ++ +  S GVPV P+   
Sbjct: 81  AIHPGYGFLSENPDFAQACADAGIAFIGPSPAVLRSLGNKVAARNLAISLGVPVVPATDA 140

Query: 114 NRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
                 +       +  P ++K   GG   G+  I  +  +   +     ++ +    D+
Sbjct: 141 LPHDDAACLRLAREVGYPLMLKASWGGGGRGMRAIHDEAELLPAIASARREAGAAFGNDE 200

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           + +E+ V     +   V+GD   ++              ++  +       PA  +    
Sbjct: 201 VYLEKLVQRAHHVEVQVLGDQHGNLV-----HVFERDCSVQRRNQKVIERAPAPYLGDAG 255

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + + + A    + +G       +FL D  +   +++E+N 
Sbjct: 256 RQALFQAALTLTRGVGYTHAGTVEFLMDADTGNFYFIEVNP 296


>gi|193290652|gb|ACF17634.1| putative acetyl co-enzyme A carboxylase biotin carboxylase subunit
           [Capsicum annuum]
          Length = 536

 Score = 80.6 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 79/220 (35%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
           +LH  +G   E+ +   +     I +      +  +  DK  ++  + + GVP  P    
Sbjct: 146 MLHPGYGFLSENAVFVEMCREHGINFIGPNPDSIRVMGDKSTARDTMKNAGVPTVPGSDG 205

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS----IPLDLLQSSSWNHGDQ 165
            +      +     I  P +IK   GG   G+ + K+       +     ++++    D 
Sbjct: 206 LLQSTEEGVRLAEEIGYPVMIKATAGGGGRGMRLAKEPGEFVKLLQQAKSEAAAAFGNDG 265

Query: 166 LLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+Y ++   +   V+ D   +V               K             +  ++ 
Sbjct: 266 VYLEKYIINPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLL----EEAPSPALTPELR 321

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K +   A  A  +IG  G+   +FL D      +++E+N 
Sbjct: 322 KAMGDAAVAAAASIGYVGVGTIEFLLDER-GSFYFMEMNT 360


>gi|13473387|ref|NP_104954.1| pyruvate carboxylase [Mesorhizobium loti MAFF303099]
 gi|14024136|dbj|BAB50740.1| pyruvate carboxylase [Mesorhizobium loti MAFF303099]
          Length = 1152

 Score = 80.6 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 78/221 (35%), Gaps = 18/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E            I +            +K+ ++ +    GVPV P+   
Sbjct: 85  AIHPGYGLLSESPEFAEACAQAGITFIGPKPDTMRRLGNKVAARNLAIEVGVPVIPATDP 144

Query: 114 NRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGDQ 165
               M++       I  P ++K   GG   G+  I+ +  +  ++     ++ +    D+
Sbjct: 145 LPDDMEAVKKLAKEIGYPVMLKASWGGGGRGMRAIRSEADLAREVTEGKREAKAAFGKDE 204

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           + +E+ ++    +   V+GD   +   +            K          PA  + +  
Sbjct: 205 VYLEKLIERARHVEVQVLGDTHGNAVHLFERDCSIQRRNQK-----VVERAPAPYLEMSQ 259

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +E+   A    +     G    +FL D  + K +++E+N 
Sbjct: 260 REELCGYALKIARETSYIGAGTVEFLQDADTGKFYFIEVNP 300


>gi|127514293|ref|YP_001095490.1| acetyl-CoA carboxylase, biotin carboxylase [Shewanella loihica
           PV-4]
 gi|126639588|gb|ABO25231.1| acetyl-CoA carboxylase, biotin carboxylase [Shewanella loihica
           PV-4]
          Length = 450

 Score = 80.6 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 79/222 (35%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +      +         L  DK+ +   + + GVP  P    
Sbjct: 79  AIHPGYGFLAENADFAQQVTDSGFHFIGPKADTIRLMGDKVSAIAAMKAAGVPTVPGSDG 138

Query: 112 LVNRFT---MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGD 164
           L+       ++    I  P +IK   GG   G+ V++ +  +   +     ++ +     
Sbjct: 139 LLGDNEAQSLEIAAQIGYPLIIKATAGGGGKGMRVVEDEAQLLGAIALTRQEAEAAFGNG 198

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+Y+     +   V+ D       +          + K          PA  +  +
Sbjct: 199 GVYLEKYLTRPRHIEVQVLCDHQGHCISLGERDCSLQRAQQK-----VIESAPAPGLTPE 253

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +++      A QAIG RG    +FL+     + +++E+N 
Sbjct: 254 QRQQISESCIRACQAIGYRGAGTLEFLY--QDGEFYFMEMNT 293


>gi|308063868|gb|ADO05755.1| biotin carboxylase [Helicobacter pylori Sat464]
          Length = 455

 Score = 80.6 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/225 (16%), Positives = 78/225 (34%), Gaps = 14/225 (6%)

Query: 49  LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
            + D  F   +G   E+     I     + +        AL  DK ++K V+   G+PV 
Sbjct: 84  FEADAIFPG-YGFLSENQNFVEICSHHSLEFIGPSAKVMALMSDKSKAKSVMKEAGMPVI 142

Query: 109 PS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSW 160
                 +   +   +    I  P +IK   GG   G+ V++    +         ++ S 
Sbjct: 143 EGSDGLLKSYQEAEEIADKIGYPVIIKAAAGGGGRGMRVVEDKSRLKNLYLAAETEALSA 202

Query: 161 NHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI 219
                + +E+++     +   ++ D   +V  +          + K             +
Sbjct: 203 FGDGSVYLEKFINKPKHIEVQILADKHGNVIHVGERDCSVQRRQQKLI----EETPAVVL 258

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              + K +   A  A + IG  G    +FL D   +  +++E+N 
Sbjct: 259 EEGVRKRLLETAIKAAKYIGYVGAGTFEFLLDSNMKDFYFMEMNT 303


>gi|210135244|ref|YP_002301683.1| biotin carboxylase [Helicobacter pylori P12]
 gi|210133212|gb|ACJ08203.1| biotin carboxylase [Helicobacter pylori P12]
          Length = 459

 Score = 80.6 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/225 (16%), Positives = 79/225 (35%), Gaps = 13/225 (5%)

Query: 49  LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
            + D  F   +G   E+     I     + +        AL  DK ++K V+   G+PV 
Sbjct: 87  FEADAIFPG-YGFLSENQNFVEICSHHSLEFIGPSAKVMALMSDKSKAKSVMKEAGMPVI 145

Query: 109 PS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSW 160
                 +   +   +    I  P +IK   GG   G+ V++    +         ++ S 
Sbjct: 146 EGSEGLLKSYQEAEEIADKIGYPVIIKAAAGGGGRGMRVVEDKSKLKNLYLAAETEALSA 205

Query: 161 NHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI 219
                + +E+++     +   ++ D   +V  +            K S   +       +
Sbjct: 206 FGDGSVYLEKFINKPKHIEVQILADKHGNVIHVGRKGIARCKDASKSSLKET---PAVVL 262

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              + + +   A  A + IG  G    +FL D   +  +++E+N 
Sbjct: 263 EEGVRERLLETAIKAAKYIGYVGAGTFEFLLDSNMKDFYFMEMNT 307


>gi|10567274|dbj|BAB16297.1| acetyl-CoA carboxylase biotin carboxylase subunit [Myxococcus
           xanthus]
          Length = 573

 Score = 80.6 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 82/220 (37%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+           + +      A  L  +K ++   + + GVP  P    
Sbjct: 79  AIHPGYGFLSENADFARACRDAGLVFIGPEAEAITLMGNKRQANVRMIAAGVPCIPGYEA 138

Query: 114 NRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS-----SWNHGD 164
           +    ++       I  P ++K   GG   G+ ++ +   +   L  +      ++  G+
Sbjct: 139 SDLDDEALAVEGERIGFPLMVKAAAGGGGRGMRLVHEASQLRAALRAARSEATNAFGSGE 198

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
            +L +  +D   +   V  D   +V  +        S + ++  +      PA +   + 
Sbjct: 199 LILEKAVIDARHVEVQVFADTHGNVVHLGERD---CSVQRRHQKIVEESPSPA-VSPALR 254

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +  +A  A +AIG RG    +FL  P     +++E+N 
Sbjct: 255 ARMGEVAVAAARAIGYRGAGTIEFLLAPS-GDFYFMEMNT 293


>gi|327473606|gb|EGF19026.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus sanguinis
           SK408]
          Length = 455

 Score = 80.6 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 77/220 (35%), Gaps = 16/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  FG   E+     + E + I +         L  DK+ ++  +    VPV P    
Sbjct: 77  AIHPGFGFLSENSKFATMCEEVGIKFIGPSGAVMDLMGDKINARAQMIKAKVPVIPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
            +  +   ++    I  P ++K   GG   GI  ++K + +         ++ +      
Sbjct: 137 EVHTSEEALEVAEKIGYPVMLKASAGGGGKGIRKVEKAEDLVAAFESASSEAKAAFGNGA 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+ +     +   ++ D    V  +            K             I   + 
Sbjct: 197 MYMERVIYPARHIEVQILADQQRHVVHLGERDCSLQRNNQKVL----EESPSVAIGKTLR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +++   A  A Q++G       +FL D    + +++E+N 
Sbjct: 253 QQIGEAAVRAAQSVGYENAGTIEFLLDEAKGEFYFMEMNT 292


>gi|308062360|gb|ADO04248.1| biotin carboxylase [Helicobacter pylori Cuz20]
          Length = 455

 Score = 80.6 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 38/225 (16%), Positives = 78/225 (34%), Gaps = 14/225 (6%)

Query: 49  LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
            + D  F   +G   E+     I     + +        AL  DK ++K V+   G+PV 
Sbjct: 84  FEADAIFPG-YGFLSENQNFVEICSHHSLEFIGPSAKVMALMSDKSKAKSVMKEAGMPVI 142

Query: 109 PS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSW 160
                 +   +   +    I  P +IK   GG   G+ V++    +         ++ S 
Sbjct: 143 EGSDGLLKSYQEAEEIADKIGYPVIIKAAAGGGGRGMRVVEDKSRLKNLYLAAETEALSA 202

Query: 161 NHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI 219
                + +E+++     +   ++ D   +V  +          + K             +
Sbjct: 203 FGDGSVYLEKFINKPKHIEVQILADKHGNVIHVGERDCSVQRRQQKLI----EETPAVVL 258

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              + K +   A  A + IG  G    +FL D   +  +++E+N 
Sbjct: 259 EEGVRKRLLETAIKAAKYIGYVGAGTFEFLLDSNMKDFYFMEMNT 303


>gi|293553493|ref|ZP_06674121.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecium
           E1039]
 gi|291602370|gb|EFF32594.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecium
           E1039]
          Length = 1061

 Score = 80.6 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 54/296 (18%), Positives = 112/296 (37%), Gaps = 34/296 (11%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL++ G++V  ++ +                       V  +L   +PD     L G  G
Sbjct: 36  ALKEEGYEVVLVNSNPATIMTDKKVADQVYIEPITLEFVSRILRKERPDALLPTLGGQTG 95

Query: 64  EDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFT 117
            +  ++     ILE L I    + + A   + D+   KQ++     P+  S +VN     
Sbjct: 96  LNMAMELAASGILEELNIELLGTKLSAIDQAEDRDLFKQLMKELNQPIPESEIVNTVEEA 155

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IE 176
           +D  + I  P +++P       G  + + ++ + +      S +   Q LIE+ + G  E
Sbjct: 156 VDFANKIGYPVIVRPAFTLGGTGGGMCENEEELRIVSENGLSLSPATQCLIERSIAGFKE 215

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +   VM D++ +   I V   + +     ++  +        +    Y+ ++  +    +
Sbjct: 216 IEYEVMRDSADNA--IVVCNMENFDPVGIHTGDSIVFAPSQTLSDHEYQMLRDASLSIIR 273

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           A+   G        DP S   + +E+N  P ++  S     +   GY   +L   +
Sbjct: 274 ALKIEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAKI 325



 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 26/225 (11%), Positives = 75/225 (33%), Gaps = 13/225 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC--PSILVNRFTMDSQHLISPPYV 129
           L    +    + I     + ++   +Q +    +P     +       +     I  P +
Sbjct: 646 LTAAGVKILGTTIEDLDRAENRDLFEQALKELDIPQPLGDTATSKEEAVVIASRIGYPVL 705

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           ++P        + +++  + +   +  +   +    +L+++Y+ G E     + D    +
Sbjct: 706 VRPSYVLGGRAMEIVENQRDLEDYMEHAVKASPEHPVLVDRYLLGGECEVDAICDGETVL 765

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               +   +           +S  V P + +   I K ++         + C G+    F
Sbjct: 766 IPGIMEHIERAGVHS----GDSMAVYPPQTLSESIKKTIEDYTIRLALGLNCVGMMNIQF 821

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +      +V+ +E+N +   T     P ++   G    ++    +
Sbjct: 822 VIHE--NEVYVIEVNPRASRT----VPFLSKVTGIPMAQIATKAI 860


>gi|281204668|gb|EFA78863.1| methylcrotonyl-CoA carboxylase [Polysphondylium pallidum PN500]
          Length = 703

 Score = 80.6 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 79/221 (35%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+     + E   I +      A      K  SK ++    VP  P    
Sbjct: 111 AIHPGYGFLSENAGFADLCEKEGIIFIGPPSSAILAMGSKSASKDIMIRANVPTIPGYHG 170

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGDQ 165
                +        I  P +IK + GG   G+ ++++ + +   +     +S +    D+
Sbjct: 171 EDQEFETLRSEAEKIGYPVLIKAVMGGGGKGMRIVERPEDLEDGINSSKRESKASFGDDR 230

Query: 166 LLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           +L+E+Y V    +   V  D   +               ++          PA  +  ++
Sbjct: 231 VLVEKYLVHPRHVEIQVFADRHGNCV-----HLFERDCSVQRRHQKIIEEAPAPHLSEEL 285

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            K++   A  A +A+G  G    +F+        +++E+N 
Sbjct: 286 RKKMGDAAVAAAKAVGYVGAGTVEFILS-QDGSFYFMEMNT 325


>gi|168698983|ref|ZP_02731260.1| biotin carboxylase [Gemmata obscuriglobus UQM 2246]
          Length = 451

 Score = 80.6 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 37/219 (16%), Positives = 76/219 (34%), Gaps = 17/219 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+           I +    + A     +K +SK V  +  VP  P    
Sbjct: 77  AIHPGYGFLSENSKFAEQCRDSGIEFIGPPVGAMDRLGNKDKSKTVARAAKVPTVPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN----HGDQ 165
            +          +++  P ++K   GG   G+ V + D S+   L  + +          
Sbjct: 137 LVETEEQAKKFANMVGYPVLVKASAGGGGRGMRVARDDASLATGLSAARAEAEAAFKDGS 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+Y+D    +   ++GD   +V  +            K             +P  + 
Sbjct: 197 VFLEKYLDRPRHVEVQLIGDQHGNVIHLFERDCSLQRRHQK----LVEESPSPNLPDSVR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
           +E+   A    +  G       +FL D  +   +++E+N
Sbjct: 253 QEMCAAAVRLAKEAGYYNAGTCEFLVDQQNN-YYFIEVN 290


>gi|331082143|ref|ZP_08331271.1| carbamoyl-phosphate synthase [Lachnospiraceae bacterium 6_1_63FAA]
 gi|330405738|gb|EGG85268.1| carbamoyl-phosphate synthase [Lachnospiraceae bacterium 6_1_63FAA]
          Length = 1072

 Score = 80.6 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 49/278 (17%), Positives = 98/278 (35%), Gaps = 36/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+++  +              DV          +  ++A  +PD    
Sbjct: 29  SGTQACKALRNLGYEIVLVNSNPATIMTDPSTADVTYIEPLNVERLTEIIAKERPDALLP 88

Query: 57  VLHGNFG----EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G  G    E+     +L+   +      + A +   D++  K  +   G+ +  S  
Sbjct: 89  NLGGQSGLNLCEELYHAGVLDKYNVEVIGVQVDAISRGEDRIEFKNAMDKLGIEMAKSAP 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     +  P VI+P       G  ++  ++ +     +  + +  +Q+L+E+
Sbjct: 149 AYSVEEALKIAEELGYPCVIRPAYTMGGTGGGIVYNEEELKKVAARGIAASMVNQILVEE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK---IPLDIYKE 226
            V G  EL   V+ D +     I   ++                   A    I  D+   
Sbjct: 209 SVIGWEELEVEVVRDKTGKKISICFIENI-----DPMGVHTGDSFCSAPMLTISQDLQDR 263

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +++ A    ++IG  G +   F  DP S ++  +EIN 
Sbjct: 264 LEKQAHAIVESIGVIGGTNVQFAHDPKSDRIIIIEINP 301



 Score = 50.5 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 30/201 (14%), Positives = 75/201 (37%), Gaps = 10/201 (4%)

Query: 68  VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-ILVN-RFTMDSQHLIS 125
           + A LE        +      ++ D+     ++    +P+  S + VN    ++  H I 
Sbjct: 643 IAAELEKRGAHILGTSPAVIDMAEDRDLFNAMMHKLEIPMPESGMAVNVEEALEIAHRIG 702

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGD 184
            P +++P       G+ V+  D  +   +  +        +L+++++ + +E     + D
Sbjct: 703 YPMMVRPSYVLGGRGMEVVYDDNMLRDYMAAAIDVTPERPILMDKFLQNALECETDAISD 762

Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGI 243
            +       +   +    +    S +S  V+P  +I     + +++        +G  G+
Sbjct: 763 GTHAFVPTVMQHIE----QAGIHSGDSACVIPSVEISEKNKELIRKYTTAIACEMGVVGL 818

Query: 244 SRSDFLFDPLSRKVFWLEINV 264
              +  +     KV+ LE N 
Sbjct: 819 --MNMQYAICEDKVYVLEANP 837


>gi|121713104|ref|XP_001274163.1| 3-methylcrotonyl-CoA carboxylase subunit alpha (MccA), putative
           [Aspergillus clavatus NRRL 1]
 gi|119402316|gb|EAW12737.1| 3-methylcrotonyl-CoA carboxylase subunit alpha (MccA), putative
           [Aspergillus clavatus NRRL 1]
          Length = 712

 Score = 80.6 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 79/220 (35%), Gaps = 16/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+           + +      A     DK +SK+++++ GVP  P    
Sbjct: 110 AIHPGYGFLSENSEFARKCTEAGLVFIGPPWKAIEDMGDKSQSKKIMTAAGVPCVPGYHG 169

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
           +   ++        I  P +IK +KGG   G+ +          L  + S        D 
Sbjct: 170 SNQDVNFLEAEADKIKYPVLIKAVKGGGGKGMRIASSKAEFQAQLQSAKSEAMNSFGDDH 229

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           +L+E+Y+     +   V  D   +   +            K             +P    
Sbjct: 230 VLVEKYITTPRHIEVQVFADKHGNCVALGERDCSIQRRHQKIL----EESPAPHLPDVTR 285

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K++   A  A  A+G  G    +F+FD  + + F++E+N 
Sbjct: 286 KDIWAKARAAALAVGYEGAGTVEFIFDNDTGEFFFMEMNT 325


>gi|18204091|gb|AAH21382.1| Methylcrotonoyl-Coenzyme A carboxylase 1 (alpha) [Mus musculus]
          Length = 717

 Score = 80.6 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 86/221 (38%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H  +G   E+     + +   I +      A      K  SK ++++ GVPV      
Sbjct: 120 AIHPGYGFLSENMEFAELCKQEGIIFIGPPSSAIRDMGIKSTSKSIMAAAGVPVVEGYHG 179

Query: 113 ---VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD----QSIPLDLLQSSSWNHGDQ 165
               ++   +    I  P +IK ++GG   G+ +++ +    + +     ++    + D 
Sbjct: 180 KDQSDQCLREHAGKIGYPVMIKAVRGGGGKGMRIVRSEREFQEQLESARREAKKSFNDDA 239

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           +LIE++VD    +   V GD   +   +           ++          PA  I  ++
Sbjct: 240 MLIEKFVDTPRHVEVQVFGDHHGNAVYL-----FERDCSVQRRHQKIIEEAPAPGINPEV 294

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +++   A  A +A+   G    +F+ D      +++E+N 
Sbjct: 295 RRKLGEAAVRAAKAVKYVGAGTVEFIMDSKHN-FYFMEMNT 334


>gi|299770714|ref|YP_003732740.1| urea carboxylase [Acinetobacter sp. DR1]
 gi|298700802|gb|ADI91367.1| urea carboxylase [Acinetobacter sp. DR1]
          Length = 1201

 Score = 80.6 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 41/257 (15%), Positives = 89/257 (34%), Gaps = 32/257 (12%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+     + E   I +             K  ++++     VP+ P   +
Sbjct: 77  AIHPGYGFLSENAEFCDLCESQGIAFIGPTSSQMLDFGLKHTARELAIKSNVPLLPGSSL 136

Query: 114 NRFTMDS---QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN----HGDQL 166
                ++      I  P ++K   GG  +G+ ++  +  +       S           L
Sbjct: 137 LADEAEALTEATRIGYPVMLKSTAGGGGIGMRLVWNEVELKDAYQTVSYLAQVNFKDAGL 196

Query: 167 LIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIY 224
            +E++V     +   + GD    V  +           ++  +       PA  +     
Sbjct: 197 YLEKFVQHARHIEVQIFGDGQGQVLALGE-----RDCSVQRRNQKVIEETPAPHLNEQQR 251

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
             +Q++A    Q++  R     +F+ D  +++ ++LE+N             +    G +
Sbjct: 252 DYLQKVAIQLMQSVNYRSAGTVEFVMDTETQEFYFLEVNT-----------RLQVEHGVT 300

Query: 285 ---FR-ELLLWMVEDAS 297
              F  +L+ WMV  AS
Sbjct: 301 EQVFGVDLVEWMVTLAS 317


>gi|12276064|gb|AAG50244.1|AF310338_1 3-methylcrotonyl-CoA carboxylase alpha subunit [Mus musculus]
          Length = 717

 Score = 80.6 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 86/221 (38%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H  +G   E+     + +   I +      A      K  SK ++++ GVPV      
Sbjct: 120 AIHPGYGFLSENMEFAELCKQEGIIFIGPPSSAIRDMGIKSTSKSIMAAAGVPVVEGYHG 179

Query: 113 ---VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD----QSIPLDLLQSSSWNHGDQ 165
               ++   +    I  P +IK ++GG   G+ +++ +    + +     ++    + D 
Sbjct: 180 KDQSDQCLREHAGKIGYPVMIKAVRGGGGKGMRIVRSEREFQEQLESARREAKKSFNDDA 239

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           +LIE++VD    +   V GD   +   +           ++          PA  I  ++
Sbjct: 240 MLIEKFVDTPRHVEVQVFGDHHGNAVYL-----FERDCSVQRRHQKIIEEAPAPGINPEV 294

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +++   A  A +A+   G    +F+ D      +++E+N 
Sbjct: 295 RRKLGEAAVRAAKAVKYVGAGTVEFIMDSRHN-FYFMEMNT 334


>gi|254465488|ref|ZP_05078899.1| RimK-like ATP-grasp domain family [Rhodobacterales bacterium Y4I]
 gi|206686396|gb|EDZ46878.1| RimK-like ATP-grasp domain family [Rhodobacterales bacterium Y4I]
          Length = 681

 Score = 80.6 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 76/221 (34%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      LE   + +      A     DK+ SK++    GV   P  + 
Sbjct: 77  AVHPGYGFLSENSKFAEALEAEGVAFVGPPKRAIEAMGDKITSKKIAQEAGVSTVPGYMG 136

Query: 114 NRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGD 164
                D      + I  P +IK   GG   G+ +   D+             ++S+   D
Sbjct: 137 LIADADEAVKISNEIGYPVMIKASAGGGGKGMRIAWNDEEAREGFQSSKNEAANSFG-DD 195

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           ++ IE++V     +   V+ D   +   +   +        K             +  + 
Sbjct: 196 RIFIEKFVTQPRHIEIQVLCDTHGNGIYLGERECSIQRRNQK----VVEEAPSPFLDEET 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            K +   A    +A+G       +F+ D   +  ++LE+N 
Sbjct: 252 RKAMGEQAVALAKAVGYASAGTVEFIVDG-DKNFYFLEMNT 291


>gi|113868118|ref|YP_726607.1| Acetyl-CoA carboxylase alpha chain [Ralstonia eutropha H16]
 gi|113526894|emb|CAJ93239.1| Acetyl-CoA carboxylase alpha chain [Ralstonia eutropha H16]
          Length = 700

 Score = 80.6 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 46/219 (21%), Positives = 90/219 (41%), Gaps = 16/219 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +   EI +        AL  +K ++K  +   GVP  P    
Sbjct: 78  AIHPGYGFLSENAEFAQAVADAEITFVGPSADVIALMGNKAQAKLAMQKAGVPTVPGEQG 137

Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG----DQL 166
              +   + +   I  P ++K   GG   G+ V++   ++   L Q+ S   G    D++
Sbjct: 138 CATDEEAIAAVERIGFPVILKAAAGGGGRGMRVVRDASTLLAALRQARSEAAGAFGSDEI 197

Query: 167 LIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
           +IE+ ++ G  +   V+ D       +        S + ++  L      PA +  ++ +
Sbjct: 198 IIERAIERGRHIEIQVLCDEHGRCLHLGERD---CSTQRRFQKLIEEAPSPA-VNAELRR 253

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +  +A  A +AIG  G    +FL D   R  +++E+N 
Sbjct: 254 AMGEVAVRACEAIGYTGAGTLEFLLDGKGR-FYFMEMNT 291


>gi|54295504|ref|YP_127919.1| acetyl-CoA carboxylase [Legionella pneumophila str. Lens]
 gi|53755336|emb|CAH16832.1| hypothetical protein lpl2591 [Legionella pneumophila str. Lens]
          Length = 471

 Score = 80.6 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 35/228 (15%), Positives = 74/228 (32%), Gaps = 22/228 (9%)

Query: 47  AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP 106
             + P   F   +  F ED           I +        A    K+ +++ +   GVP
Sbjct: 75  EAIHPGYGFLSENAEFAED------CNKAGIVFIGPSAPVIATMGSKIAAREAMIKAGVP 128

Query: 107 VCPSILVNRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSS 158
             P    N  T+D        +  P ++K   GG   GI +      I         ++ 
Sbjct: 129 TIPGSEGNLETIDDALHCAETLGYPVMLKATFGGGGRGIRLCHDASQIKQQFARVQSEAE 188

Query: 159 SWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP- 216
                  + +E+Y+ +   +   ++ D    V  +            K        + P 
Sbjct: 189 KSFGDSHIYMEKYIANPRHIEVQILADHHGTVLHLFERDCSIQRRHQKL-----VEIAPS 243

Query: 217 AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            ++     + +   A  A + +G       +F+ D  + + +++E+N 
Sbjct: 244 PQLDEATRQVLLEYAVKAAKEVGYTNAGTVEFILDK-NNRPYFMEMNT 290


>gi|317178612|dbj|BAJ56400.1| biotin carboxylase [Helicobacter pylori F30]
          Length = 455

 Score = 80.6 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 38/225 (16%), Positives = 78/225 (34%), Gaps = 14/225 (6%)

Query: 49  LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
            + D  F   +G   E+     I     + +        AL  DK ++K V+   G+PV 
Sbjct: 84  FEADAIFPG-YGFLSENQNFVEICSHHSLEFIGPSAKVMALMSDKSKAKSVMKEAGMPVI 142

Query: 109 PS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSW 160
                 +   +   +    I  P +IK   GG   G+ V++    +         ++ S 
Sbjct: 143 EGSDGLLKSYQEAEEIADKIGYPVIIKAAAGGGGRGMRVVEDKSRLKNLYLAAETEALSA 202

Query: 161 NHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI 219
                + +E+++     +   ++ D   +V  +          + K             +
Sbjct: 203 FGDGSVYLEKFINKPKHIEVQILADKHGNVIHVGERDCSVQRRQQKLI----EETPAVVL 258

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              + K +   A  A + IG  G    +FL D   +  +++E+N 
Sbjct: 259 EEGVRKRLLETAIKAAKYIGYVGAGTFEFLLDSNMKDFYFMEMNT 303


>gi|298293118|ref|YP_003695057.1| pyruvate carboxylase [Starkeya novella DSM 506]
 gi|296929629|gb|ADH90438.1| pyruvate carboxylase [Starkeya novella DSM 506]
          Length = 1154

 Score = 80.6 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 40/238 (16%), Positives = 82/238 (34%), Gaps = 22/238 (9%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRS 96
             V  V    K D     +H  +G   E        E   I +            +K+ +
Sbjct: 74  DEVIRVAKEAKVD----AIHPGYGFLSESPEFAEACEEAGIVFIGPKPATMRTLGNKVAA 129

Query: 97  KQVVSSCGVPVCPSILV----NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152
           + +  S GVPV P+         F +++   +  P ++K   GG   G+  I+ +  +  
Sbjct: 130 RNLAISVGVPVMPATDPLPDDPAFILEAARKVGYPVMLKASWGGGGRGMRPIESEDKLLD 189

Query: 153 DL----LQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYS 207
            +     ++ +    D++ +E+ V     +   ++GD   ++  +            K  
Sbjct: 190 AVTTAKREAKAAFGKDEVYLEKLVRRARHVEVQILGDTHGNLVHVYERDCSIQRRNQK-- 247

Query: 208 SLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
                   PA  +     K +   A    +A    G    +FL D  +   +++E+N 
Sbjct: 248 ---VIERAPAPYVDEATRKGLTDAALAIGRATDYIGAGTVEFLMDADTGAFYFIEVNP 302


>gi|188527865|ref|YP_001910552.1| biotin carboxylase [Helicobacter pylori Shi470]
 gi|188144105|gb|ACD48522.1| biotin carboxylase [Helicobacter pylori Shi470]
          Length = 455

 Score = 80.6 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 38/225 (16%), Positives = 78/225 (34%), Gaps = 14/225 (6%)

Query: 49  LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
            + D  F   +G   E+     I     + +        AL  DK ++K V+   G+PV 
Sbjct: 84  FEADAIFPG-YGFLSENQNFVEICSHHSLEFIGPSAKVMALMSDKSKAKSVMKEAGMPVI 142

Query: 109 PS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSW 160
                 +   +   +    I  P +IK   GG   G+ V++    +         ++ S 
Sbjct: 143 EGSDGLLKSYQEAEEIADKIGYPVIIKAAAGGGGRGMRVVEDKSRLKNLYLAAETEALSA 202

Query: 161 NHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI 219
                + +E+++     +   ++ D   +V  +          + K             +
Sbjct: 203 FGDGSVYLEKFINKPKHIEVQILADKHGNVIHVGERDCSVQRRQQKLI----EETPAVVL 258

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              + K +   A  A + IG  G    +FL D   +  +++E+N 
Sbjct: 259 EEGVRKRLLETAIKAAKYIGYVGAGTFEFLLDSNMKDFYFMEMNT 303


>gi|163738793|ref|ZP_02146207.1| D-fructose-6-phosphate amidotransferase [Phaeobacter gallaeciensis
           BS107]
 gi|161388121|gb|EDQ12476.1| D-fructose-6-phosphate amidotransferase [Phaeobacter gallaeciensis
           BS107]
          Length = 645

 Score = 80.6 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 40/226 (17%), Positives = 79/226 (34%), Gaps = 25/226 (11%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      +E   + +      A      K  +K ++   GVPV P    
Sbjct: 77  AIHPGYGFLSENPAFVDAVEAAGLSFIGPSADAIRKMGLKDAAKALMEKAGVPVVPGYHG 136

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS-----SSWNHGD 164
                +        I  P +IK + GG   G+ +++        L  +     +++    
Sbjct: 137 ANQDAEFLAGEAEKIGYPVLIKAVAGGGGKGMRLVEAPAEFSDALKSAQGEATTAFG-NP 195

Query: 165 QLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            +LIE+Y+     +   V GD +  V              L+          PA  +  +
Sbjct: 196 DVLIEKYIQQPRHIEVQVFGDGTHAV------HLFERDCSLQRRHQKVIEEAPAPGMTAE 249

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR----KVFWLEINV 264
           + + +      A +AIG +G    +F+ D          +++E+N 
Sbjct: 250 MREAMGEAGVRAAEAIGYKGAGTVEFIVDGSDGLRTDGFWFMEMNT 295


>gi|320546979|ref|ZP_08041280.1| carbamoyl-phosphate synthase, large subunit [Streptococcus equinus
           ATCC 9812]
 gi|320448381|gb|EFW89123.1| carbamoyl-phosphate synthase, large subunit [Streptococcus equinus
           ATCC 9812]
          Length = 1059

 Score = 80.6 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 26/228 (11%), Positives = 79/228 (34%), Gaps = 19/228 (8%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYV 129
           L    +    + +     + D+   +Q + +  +P  P           ++ H I  P +
Sbjct: 646 LSKAGVKILGTQVADLDRAEDRDLFEQALKALNIPQPPGQTATNEEEAVEAAHKIGFPVL 705

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS--- 186
           ++P        + +++ ++ +   +  +   +    +L++ Y+ G E     + D     
Sbjct: 706 VRPSYVLGGRAMEIVENEEDLRSYMRTAVKASPDHPVLVDSYIVGRECEVDAISDGKDVL 765

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISR 245
           +      + ++  +S        +S  V P + +   + + +          + C G+  
Sbjct: 766 IPGIMEHIERAGVHS-------GDSMAVYPPQTLSKKVQETIADYTKRLAIGLNCFGMMN 818

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
             F+       V+ +E+N +   T     P ++        ++   ++
Sbjct: 819 IQFVI--KDETVYVIEVNPRASRT----VPFLSKVTNIPMAQVATKLI 860



 Score = 72.5 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 50/296 (16%), Positives = 106/296 (35%), Gaps = 34/296 (11%)

Query: 25  ALEDAGFKVSQID---------------------VDRSVGLVLAHLKPDLAFNVLHGNFG 63
           AL++ G+ V  ++                         V  +L   +PD     L G  G
Sbjct: 36  ALKEEGYSVVLVNSNPATIMTDKEIADKVYIEPLTTEFVTRILRKERPDALLPTLGGQTG 95

Query: 64  EDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFT 117
            +  ++     IL+ L +    + + A   + D+ + KQ++     P+  S +VN     
Sbjct: 96  LNMAMELSKAGILDELGVELLGTKLSAIDQAEDRDQFKQLMEDLNQPIPESEIVNTVDEA 155

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IE 176
           +     I  P +++P       G  +   ++ +          +   Q LIE+ + G  E
Sbjct: 156 VAFADSIGYPVIVRPAFTLGGTGGGMCDNEEELREIAENGLKLSPVTQCLIERSIAGFKE 215

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +   VM DA+ +   + V   + +     ++  +        +     + ++  +    +
Sbjct: 216 IEYEVMRDAADNA--LVVCNMENFDPVGIHTGDSIVFAPTQTLSDIENQMLRDASLSIIR 273

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           A+   G        DP S K + +E+N  P ++  S     +   GY   +L   +
Sbjct: 274 ALKIEGGCNVQLALDPNSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAKI 325


>gi|307177464|gb|EFN66591.1| Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial
           [Camponotus floridanus]
          Length = 705

 Score = 80.6 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 78/222 (35%), Gaps = 20/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+     + +   I +      A      K  SK ++   GVP+      
Sbjct: 106 AVHPGYGFLSENTEFAELCQRENIIFIGPPASAIRDMGIKNTSKAIMMKAGVPIIEGYHE 165

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS-----SWNHGD 164
              T +        I  P +IK ++GG   G+ +  K+      L  +      ++    
Sbjct: 166 KDQTSETLLIEARKIGFPLMIKAVRGGGGKGMRIALKESDFIEALESARTESEKAFG-DS 224

Query: 165 QLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLD 222
            +L+E+YV     +   +  D   +   +           ++          PA  I   
Sbjct: 225 AVLLEKYVAKPRHVEVQIFADKYENAVYL-----FERDCSVQRRHQKVIEEAPAPNISQK 279

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +E+   A  A +A+G  G    +F+ D  S    ++E+N 
Sbjct: 280 LRQELGEAAVRAAKAVGYVGAGTVEFIMDQNSHSFHFMEMNT 321


>gi|256822280|ref|YP_003146243.1| carbamoyl-phosphate synthase L chain ATP-binding [Kangiella
           koreensis DSM 16069]
 gi|256795819|gb|ACV26475.1| Carbamoyl-phosphate synthase L chain ATP-binding [Kangiella
           koreensis DSM 16069]
          Length = 669

 Score = 80.6 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 41/221 (18%), Positives = 80/221 (36%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      L   +I +      A      K  +K+++    VP+      
Sbjct: 77  AVHPGYGFLSENADFAKALAENDIEFIGPPEGAIIAMGSKSAAKEIMEEANVPLVKGYHG 136

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
                D        I  P +IK   GG   G+ ++ K+      L     +S++    D+
Sbjct: 137 ENQDGDFLKSQADEIGYPVIIKATAGGGGKGMRIVWKEDDFASSLASCKRESAASFSDDK 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           +L+E+Y+     +   V  D   +               ++          PA  +  + 
Sbjct: 197 VLVEKYITKPRHVEIQVFADKHGNAV-----HLFERDCSVQRRHQKVIEEAPAPGLSEET 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             ++ ++A  A QAIG  G    +FL+D      +++E+N 
Sbjct: 252 RSKMGQVAIRAAQAIGYVGAGTVEFLYDE-DESFYFMEMNT 291


>gi|170760793|ref|YP_001788939.1| biotin carboxylase [Clostridium botulinum A3 str. Loch Maree]
 gi|169407782|gb|ACA56193.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Clostridium
           botulinum A3 str. Loch Maree]
          Length = 448

 Score = 80.6 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 82/220 (37%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  FG   E+     + +   I +            +K  ++ ++   GVPV P    
Sbjct: 77  AIHPGFGFLSENSKFANMCKDCNIVFIGPDSETIDKVGNKSNARDIMIRAGVPVIPGSNG 136

Query: 111 ILVNRFT-MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
           ++ N    ++    I  P V+K   GG   GI ++   +++      + S        D 
Sbjct: 137 VIHNEEEALNIADEIGYPVVVKASAGGGGRGIRIVYSKENMIKAFNTAKSEAKGAFGDDS 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+++     +   ++GD   ++  +            K            ++  ++ 
Sbjct: 197 MYVEKFIKNPRHIEFQILGDNYGNIVHLGERDCSLQRRNQKVL----EEAPSPRMNEELR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K +  +A  A +A+G +     +FL D      +++E+N 
Sbjct: 253 KRMGDVATKAAKAVGYKNAGTIEFLLDE-DGSFYFMEMNT 291


>gi|331700652|ref|YP_004397611.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus buchneri
           NRRL B-30929]
 gi|329127995|gb|AEB72548.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus buchneri
           NRRL B-30929]
          Length = 1021

 Score = 80.6 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 46/296 (15%), Positives = 106/296 (35%), Gaps = 37/296 (12%)

Query: 22  CASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH-----GNFGEDGL 67
           C  A++ AG+    I         D   S  L    L  D   N+++     G   E G 
Sbjct: 579 CVKAIQAAGYNAIIINNNPETVSTDFSISDKLYFEPLTIDSVMNIINLEQPIGVIVEFGG 638

Query: 68  VQAI-----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--FTMDS 120
             AI     L    +    + +     + D+ + + ++    +              ++ 
Sbjct: 639 QTAINLTEGLTKHGVSILGTSLHGIEQTEDRHQFEDLLIDQNIAHPKGATATDAPEALEI 698

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            + +  P +++P       G+ V+  D  +   L+ +   +HG+ +LI+QY+ G E    
Sbjct: 699 ANHLGYPVLVRPSFVLGGKGMAVVHNDDELNEYLIPALKNSHGEPILIDQYIPGTECEVD 758

Query: 181 VMGDAS---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           ++ D +   +      +  +  +S        +     P  +  D  +++  +A    + 
Sbjct: 759 ILSDGNDVFVPGIMEHLEGAGIHS------GDSIAMYPPQTLTDDQKEKIVAIATKIGKQ 812

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +   G+    F+    + +V+ +E+N +   T     P M+        +L   ++
Sbjct: 813 VHAVGMMNIQFIV---ADEVYVIEVNPRASRT----VPFMSKIVKLHLAQLATQLI 861



 Score = 73.6 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 48/273 (17%), Positives = 96/273 (35%), Gaps = 31/273 (11%)

Query: 20  KACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFNVL 58
           +AC S L + G+ V  ++ +                      S+  ++    PD     L
Sbjct: 32  QACLS-LREEGYSVILVNSNPATIMTDDEIADKVYLEPLTVPSLKKIINKEHPDAILPTL 90

Query: 59  HGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
            G  G +  V+     IL+ L I    + +     + D+ + K ++     P+  S  V 
Sbjct: 91  GGQTGLNLAVELSKDGILDELGIELLGTSLQTINEAEDREKFKDLMEELHQPIPDSKTVY 150

Query: 115 RFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                +D  H I  P +I+P       G  +   D  +   L +  + +   + L+E+ +
Sbjct: 151 DLQDGLDFAHKIDYPVIIRPAYTLGGTGGGIAHNDDEMTTILNRGLTMSPSTECLVEKSI 210

Query: 173 DG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
            G  E+   VM D     + I V   + +     ++  +        +    Y+ ++  +
Sbjct: 211 AGFKEIEFEVMRDHHG--SSIIVTGMENFDPVGIHTGDSIVFAPTQTLTDKEYQRLRDAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
                A+   G        DP S   + +E+N 
Sbjct: 269 LTIVNALKIEGGCNVQLAQDPNSEAYYVIEVNP 301


>gi|319442750|ref|ZP_07991906.1| acyl-CoA carboxylase, alpha subunit [Corynebacterium variabile DSM
           44702]
          Length = 700

 Score = 80.6 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 46/226 (20%), Positives = 77/226 (34%), Gaps = 23/226 (10%)

Query: 58  LHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
           +H  +G   E+       E   I +      A     DK+ ++  V +  VP  P I   
Sbjct: 78  IHPGYGFLSENATFARACEDAGIVFIGPPADAIEGMGDKITARATVEARDVPTVPGISRP 137

Query: 115 RFTM----------DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL----DLLQSSSW 160
             T           D    +  P +IKP  GG   G+ V+     +         +++S 
Sbjct: 138 GLTDAELIAGVTGTDGGAGVEFPVLIKPSAGGGGKGMHVVASPDDLADTLVGARREAASS 197

Query: 161 NHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI 219
              D L IE +VD    +   VM DA  +V  +   +        K           A +
Sbjct: 198 FGDDTLFIEHFVDTPRHIEVQVMADAHGNVVHLGERECSLQRRHQK----VIEEAPSALL 253

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD-PLSRKVFWLEINV 264
             +    +   A  A ++ G RG    +F+         F++E+N 
Sbjct: 254 DEETRARIGEAACDAARSCGYRGAGTVEFIVSAKRPDLFFFMEMNT 299


>gi|91778722|ref|YP_553930.1| Urea amidolyase-related protein [Burkholderia xenovorans LB400]
 gi|91691382|gb|ABE34580.1| Urea amidolyase-related protein [Burkholderia xenovorans LB400]
          Length = 1205

 Score = 80.6 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 35/258 (13%), Positives = 85/258 (32%), Gaps = 36/258 (13%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       +   I +             K  ++++  +  V + P   +
Sbjct: 78  AVHPGYGFLSENAAFAQACDDAGIRFIGPTPTQMREFGLKHTARELARANHVALLPGTGL 137

Query: 114 N---RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD----QL 166
                  +     I  P ++K   GG  +G+ + +    +       +     +     +
Sbjct: 138 LPDVSAALREAESIGYPVMLKSTAGGGGIGMSLCRDAAQLESVFASVARLGEANFANAGV 197

Query: 167 LIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIY 224
            +E++V+    +   + GD    V  +           ++  +       PA  +     
Sbjct: 198 YLEKFVENARHIEVQIFGDGHGGVIALGE-----RDCSVQRRNQKVIEETPAPGLTPAER 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY---- 280
             +   A    QA+  +     +F+FD  +R+ ++LE+N +              +    
Sbjct: 253 SALHASAVRLAQAVKYKSAGTVEFVFDADTRQFYFLEVNTR----------LQVEHCVTE 302

Query: 281 --AGYSFRELLLWMVEDA 296
              G    +L+ WM+ +A
Sbjct: 303 EVTGI---DLVEWMIREA 317


>gi|331270157|ref|YP_004396649.1| acetyl-CoA carboxylase, biotin carboxylase [Clostridium botulinum
           BKT015925]
 gi|329126707|gb|AEB76652.1| acetyl-CoA carboxylase, biotin carboxylase [Clostridium botulinum
           BKT015925]
          Length = 449

 Score = 80.6 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 88/220 (40%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     I    +I +            +K ++++++ + GVPV P    
Sbjct: 77  AIHPGYGFLSENSDFARICNEYDIKFIGPSADTIDSLGNKSKAREIMINAGVPVIPGSNG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSWNHGDQ 165
            +      +    +I  P ++K   GG   GI +   +  +     +   ++ +    D 
Sbjct: 137 AVQDEEDALKQAEMIGYPVMVKASAGGGGRGIRIANSNDELINVFNMAKTEAKNAFGDDT 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE++++    +   ++GD   +V  +   +        K    + + ++      +  
Sbjct: 197 MYIEKFIENPRHIEFQILGDNYGNVIHLGERECSIQRRHQKVIEESPSVIM----DEETR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K++  +A  A +A+  +     +FL D  + K +++E+N 
Sbjct: 253 KKMGEVAIRAAKAVNYKNAGTIEFLLDK-NGKFYFMEMNT 291


>gi|325106012|ref|YP_004275666.1| acetyl-CoA carboxylase, biotin carboxylase [Pedobacter saltans DSM
           12145]
 gi|324974860|gb|ADY53844.1| acetyl-CoA carboxylase, biotin carboxylase [Pedobacter saltans DSM
           12145]
          Length = 446

 Score = 80.6 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 80/221 (36%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+    AI +   I +  +         DK  +K  +   GVP  P    
Sbjct: 77  AIHPGYGFLSENAKFSAICQEYGIKFIGATADQINAMGDKASAKATMKIAGVPTIPGSEG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS-----SSWNHGD 164
            +   +  ++  + I  P ++K   GG   G+ V+ KD+        +     +++ +  
Sbjct: 137 LLTSVKEGIELANKIGYPIILKATAGGGGRGMRVVWKDEDFENAWDSARQESGAAFGNDG 196

Query: 165 QLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            L +E+Y+ D   +   V+GD       ++           K             +  ++
Sbjct: 197 -LYMEKYIEDPRHIEIQVIGDQFGTACHLSERDCSIQRRHQK----LVEEAPSPFMTDEL 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +   A     A+   G    +FL D   R  +++E+N 
Sbjct: 252 RQRMGEAAIKGAVAVKYEGAGTIEFLVDKH-RNFYFMEMNT 291


>gi|294848635|ref|ZP_06789381.1| accC [Staphylococcus aureus A9754]
 gi|294824661|gb|EFG41084.1| accC [Staphylococcus aureus A9754]
          Length = 453

 Score = 80.6 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 41/220 (18%), Positives = 80/220 (36%), Gaps = 18/220 (8%)

Query: 56  NVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
           N +H  +G   E       +E   I +         +  DK+ ++Q V   GVPV P   
Sbjct: 75  NAIHPGYGFLSESTKFAQTVEEQGIAFIGPTKKTMEMMGDKITARQTVHHAGVPVIPGSN 134

Query: 111 --ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS----WNHGD 164
             +       +    I  P VIK   GG   GI ++KK + +     ++ S    +   D
Sbjct: 135 GAVNHVSEIENLAKDIGYPVVIKAASGGGGKGIRIVKKAEDLEKAFKEAKSEGKKYFDDD 194

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           ++ +E ++     +   VMGD   +   +            + +         A +  + 
Sbjct: 195 RVYVEAFIPVAKHVEVQVMGDGQDNYVHLGERDCSV----QRKNQKLIEESPCAALTEER 250

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            +++   A    +A   R     +FL    +   +++E+N
Sbjct: 251 RQQICNDAVKVARAANYRSAGTIEFLVTDTAH--YFIEMN 288


>gi|306821084|ref|ZP_07454701.1| pyruvate carboxylase [Eubacterium yurii subsp. margaretiae ATCC
           43715]
 gi|304550878|gb|EFM38852.1| pyruvate carboxylase [Eubacterium yurii subsp. margaretiae ATCC
           43715]
          Length = 1146

 Score = 80.6 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 82/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H  +G   E+       E  +I +        +   DK+ SK V  +  VP  P +  
Sbjct: 82  AIHPGYGFLSENAEFAKKCEENDIVFIGPTSKIISSVGDKISSKIVAQAAKVPTIPGVEQ 141

Query: 113 ---VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS-----SWNHGD 164
               +   ++  +    P ++K   GG   G+ ++K ++ +  +  ++      ++   D
Sbjct: 142 AIKSDVEAVNFANSCGYPVMLKASAGGGGRGMRIVKNEEELIRNFHEARSEAKKAFGIDD 201

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLD 222
            + IE+Y+D    +   ++GD   ++  +            K          PA  +  +
Sbjct: 202 -IFIEKYIDSPKHIEVQILGDRYGNIVHLFERDCSIQRRHQKL-----IEFCPAISLSEE 255

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              E+   A    + +G       +FL D      +++E+N 
Sbjct: 256 KRLEICNDAVKLAKHVGYINAGTVEFLVDKDMNH-YFIEVNP 296


>gi|229588166|ref|YP_002870285.1| acetyl-CoA carboxylase biotin carboxylase subunit [Pseudomonas
           fluorescens SBW25]
 gi|229360032|emb|CAY46886.1| biotin carboxylase [Pseudomonas fluorescens SBW25]
          Length = 452

 Score = 80.6 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 37/217 (17%), Positives = 75/217 (34%), Gaps = 18/217 (8%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI--LVNRF 116
           +G   E+      +E     +         L  DK+ +K  + + GVP  P     +   
Sbjct: 87  YGFLAENADFAEQVEKSGFAFIGPKADTIRLMGDKVSAKDAMIAAGVPTVPGSDGPLPED 146

Query: 117 TMDSQHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQLLIE 169
              +  +   +  P +IK   GG   G+ V+ K++ +         ++ +W     + +E
Sbjct: 147 EETALRIGREVGYPVIIKAAGGGGGRGMRVVHKEEDLIEAAKQTRSEAGAWFGNPMVYLE 206

Query: 170 QYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
           +Y+     +   V+ D                   L+          PA  +     +EV
Sbjct: 207 KYLTNPRHVEVQVLSDGQGHAI-----HLGDRDCSLQRRHQKVLEEAPAPGLDEKARQEV 261

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
                 A   I  RG    +FL+   + + +++E+N 
Sbjct: 262 LARCVKACIDINYRGAGTFEFLY--ENGRFYFIEMNT 296


>gi|195997217|ref|XP_002108477.1| hypothetical protein TRIADDRAFT_18834 [Trichoplax adhaerens]
 gi|190589253|gb|EDV29275.1| hypothetical protein TRIADDRAFT_18834 [Trichoplax adhaerens]
          Length = 703

 Score = 80.6 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 83/221 (37%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H  +G   E+     + E   I +      A      K  SKQ+++  GVP+      
Sbjct: 100 AIHPGYGFLSENADFAELCESQGIVFIGPPASAIRDMGLKSTSKQIMADAGVPIIEGYHG 159

Query: 113 ---VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN----HGDQ 165
               +    D    I  P ++K + GG   G+ ++  +      L  +   +    + D+
Sbjct: 160 EDQADAKLKDEASRIGYPVMLKAVCGGGGKGMRIVMNEGEFDQALESARRESLKSFNDDK 219

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           +++E+Y++    +   V  D   +   ++          ++          PA  +   I
Sbjct: 220 MIVEKYIEEPRHVEVQVFADQHGNAVYLSE-----RDCSVQRRHQKIIEEAPAPGLSESI 274

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             E+   A  A +A+   G    +F+ D   +K F++E+N 
Sbjct: 275 RHEIGAAAVRAAKAVNYVGAGTVEFIMDKH-KKFFFMEMNT 314


>gi|315038738|ref|YP_004032306.1| carbamoyl phosphate synthase large subunit [Lactobacillus
           amylovorus GRL 1112]
 gi|325957174|ref|YP_004292586.1| carbamoyl phosphate synthase large subunit [Lactobacillus
           acidophilus 30SC]
 gi|312276871|gb|ADQ59511.1| carbamoyl phosphate synthase large subunit [Lactobacillus
           amylovorus GRL 1112]
 gi|325333739|gb|ADZ07647.1| carbamoyl phosphate synthase large subunit [Lactobacillus
           acidophilus 30SC]
          Length = 1062

 Score = 80.6 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 43/299 (14%), Positives = 99/299 (33%), Gaps = 42/299 (14%)

Query: 22  CASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNV--LHGNFGEDGLVQ- 69
           C  AL+  G++   I         D   S  L    L  +   NV  L    G   +VQ 
Sbjct: 577 CVKALQKMGYEAIVINSNPETVSTDFSVSDKLYFEPLTLEDVLNVCDLEKPVG--AIVQF 634

Query: 70  ---------AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--M 118
                    A LE   +    + +     + D+    +++ +  +     +        +
Sbjct: 635 GGQTSINLAAGLEKHGVKILGTKVKDVNRAEDRELFDEIIKNLQLNQPNGLTATTHEGVL 694

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           ++   +  P +++P        + ++     +   L           +L++ Y+DG E  
Sbjct: 695 EAADKLGYPVLVRPSYVLGGKAMEIVYNKDELEEYLQDHVDIAADHPILVDDYLDGRECD 754

Query: 179 CGVMGDAS---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLA 234
              + D     L      +  +  +S        +S  V P +    ++ +++  +    
Sbjct: 755 VDAICDGKDVLLPGIMEHIEHAGVHS-------GDSMAVYPPQTFTEEVKEKITDVTRKL 807

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
              + C GI    F+      +V+ +E+N +   T     P ++   G    ++   ++
Sbjct: 808 ALTLHCVGIMNIQFIVR--DGEVYVIEVNPRASRT----VPFLSKITGIEMAQVATRVI 860



 Score = 75.5 bits (185), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 49/289 (16%), Positives = 97/289 (33%), Gaps = 39/289 (13%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI---------DVD------------RSVGLV 45
           G ++E + S   G     AL + G++V  +         D               S+  +
Sbjct: 21  GQAAEFDYS---GTQACLALREEGYEVVLVNSNPATIMTDTTIADKVYIEPLTVESISRI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +    PD     L G  G +  +      IL+ L I    + + +   + D+ + K++  
Sbjct: 78  IRQEYPDAILPTLGGQVGLNMALALAKTGILDELHIELLGTKLDSIEQAEDREKFKELCK 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G PV PS  VN     +     I  P +++P       G  +    + +         
Sbjct: 138 KLGEPVPPSKTVNTVEDALAFGDEIGYPIIVRPAFTMGGTGGGICHNREELAEIAKNGLE 197

Query: 160 WNHGDQLLIEQYVDG---IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216
            +   + LIE+ + G   IE       D +  +            +     + +S    P
Sbjct: 198 LSPVTECLIEKSIAGYKEIEFEVMRDHDDNAMIVCCMENFDPVGIH-----TGDSIVFSP 252

Query: 217 AK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           ++ +    Y+ ++  +    +A+   G        DP S     +E+N 
Sbjct: 253 SQTLSDKEYQMLRDCSLRLIRALKIEGGCNVQLALDPTSFNYDVIEVNP 301


>gi|311029912|ref|ZP_07708002.1| biotin carboxylase [Bacillus sp. m3-13]
          Length = 447

 Score = 80.6 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 39/215 (18%), Positives = 80/215 (37%), Gaps = 14/215 (6%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVN 114
           +G   E+G     L  + + +    +    L  DK+ S++ +   GVPV P     +   
Sbjct: 81  YGFLSENGEFAQALHDVGLTFIGPSVDVIKLMGDKLSSRRAMIKAGVPVVPGSEQPVESL 140

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ----SSSWNHGDQLLIEQ 170
              +     I  P ++K   GG  +G+   +  + I     Q    + ++   + + IE+
Sbjct: 141 EEALVLAEKIGFPVMLKASGGGGGIGMHRCENREDIENTFEQTKKRAKAYFKNEDMFIEK 200

Query: 171 YV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           YV +   +   + GDA  +V  +            K             +  +  K++  
Sbjct: 201 YVGNAKHIEVQIFGDAHGNVVHMFERNCSVQRRNQK----VIEEAQSPAMSEETRKKICE 256

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            A LA + +  +     +F+ D      ++LE+N 
Sbjct: 257 AAVLAAKEVDYKNAGTVEFIMDEEEN-FYFLEMNT 290


>gi|261405947|ref|YP_003242188.1| acetyl-CoA carboxylase, biotin carboxylase [Paenibacillus sp.
           Y412MC10]
 gi|261282410|gb|ACX64381.1| acetyl-CoA carboxylase, biotin carboxylase [Paenibacillus sp.
           Y412MC10]
          Length = 447

 Score = 80.6 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 78/221 (35%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+     I E   I +      A     DK  +KQ +   GVPV P    
Sbjct: 78  AIHPGYGFLAENADFAEICESCNITFIGPSADAINRMGDKAVAKQTMKDAGVPVIPGSDG 137

Query: 114 NRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS-----SSWNHGD 164
               +D        I  P +IK   GG   GI + + ++S+   +  +      ++ +  
Sbjct: 138 LVEDLDEAVMLARDIGYPVIIKATAGGGGKGIRIAEDEESLIKQITNAQQEAQKAFGNAG 197

Query: 165 QLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            + +E+Y+ G   +   ++ D   +   +            K             +  ++
Sbjct: 198 -VYLEKYLTGMKHVEIQIIADKHGNAVHLGERDCSVQRRRQK----LVEEAPCPVLSEEV 252

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              +   A  A +A+   G    +FL      + +++E+N 
Sbjct: 253 RSRMGEAAVRAAKAVNYSGAGTLEFLL-GQDGQFYFMEMNT 292


>gi|124024837|ref|YP_001013953.1| acetyl-CoA carboxylase biotin carboxylase subunit [Prochlorococcus
           marinus str. NATL1A]
 gi|123959905|gb|ABM74688.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Prochlorococcus
           marinus str. NATL1A]
          Length = 447

 Score = 80.6 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 76/220 (34%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-SIL 112
            +H  +G   E+     I     + +      A     DK  +K  +   GVP  P S  
Sbjct: 78  AIHPGYGFLAENDRFAEICGDHGLIFVGPSPHAIRSMGDKSTAKSTMQKVGVPTVPGSEG 137

Query: 113 VNRFTMDSQHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSWNHGDQ 165
           +     D+  L   +  P +IK   GG   G+ ++     +         ++ +      
Sbjct: 138 LLDSVSDASKLASGMGYPVMIKATAGGGGRGMRLVTHSDELENLFKAAQGEAEAAFGNPG 197

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           L +E+++D    +   ++ D   +V  +            K    +     PA +   + 
Sbjct: 198 LYMEKFIDRPRHVEVQILADRFGNVVHLGERDCSIQRRHQKLLEESP---SPA-LDDHLR 253

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +   A  A ++I   G    +FL D      +++E+N 
Sbjct: 254 IRMGEAAVAAAKSINYEGAGTVEFLLDRH-GSFYFMEMNT 292


>gi|186700620|ref|NP_076133.3| methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial [Mus
           musculus]
 gi|20138697|sp|Q99MR8|MCCA_MOUSE RecName: Full=Methylcrotonoyl-CoA carboxylase subunit alpha,
           mitochondrial; Short=MCCase subunit alpha; AltName:
           Full=3-methylcrotonyl-CoA carboxylase 1; AltName:
           Full=3-methylcrotonyl-CoA carboxylase biotin-containing
           subunit; AltName: Full=3-methylcrotonyl-CoA:carbon
           dioxide ligase subunit alpha; Flags: Precursor
 gi|12841549|dbj|BAB25253.1| unnamed protein product [Mus musculus]
 gi|26326991|dbj|BAC27239.1| unnamed protein product [Mus musculus]
 gi|74214446|dbj|BAE40458.1| unnamed protein product [Mus musculus]
          Length = 717

 Score = 80.6 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 86/221 (38%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H  +G   E+     + +   I +      A      K  SK ++++ GVPV      
Sbjct: 120 AIHPGYGFLSENMEFAELCKQEGIIFIGPPSSAIRDMGIKSTSKSIMAAAGVPVVEGYHG 179

Query: 113 ---VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD----QSIPLDLLQSSSWNHGDQ 165
               ++   +    I  P +IK ++GG   G+ +++ +    + +     ++    + D 
Sbjct: 180 KDQSDQCLREHAGKIGYPVMIKAVRGGGGKGMRIVRSEREFQEQLESARREAKKSFNDDA 239

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           +LIE++VD    +   V GD   +   +           ++          PA  I  ++
Sbjct: 240 MLIEKFVDTPRHVEVQVFGDHHGNAVYL-----FERDCSVQRRHQKIIEEAPAPGINPEV 294

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +++   A  A +A+   G    +F+ D      +++E+N 
Sbjct: 295 RRKLGEAAVRAAKAVKYVGAGTVEFIMDSRHN-FYFMEMNT 334


>gi|157150200|ref|YP_001450966.1| acetyl-CoA carboxylase biotin carboxylase subunit [Streptococcus
           gordonii str. Challis substr. CH1]
 gi|157074994|gb|ABV09677.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus gordonii
           str. Challis substr. CH1]
          Length = 459

 Score = 80.6 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 33/220 (15%), Positives = 77/220 (35%), Gaps = 16/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  FG   E+     + E + + +         +  DK+ ++  +    VPV P    
Sbjct: 77  AIHPGFGFLSENSKFATMCEEVGVKFIGPSGAIMDMMGDKINARAQMIKANVPVIPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
            +      ++    I  P ++K   GG   GI  ++K + +         ++ +      
Sbjct: 137 EVFTADEALEVAEKIGYPVMLKASAGGGGKGIRKVEKAEDLVAAFESASSEAKAAFGNGA 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+ +     +   ++ D    V  +            K             I   + 
Sbjct: 197 MYMERVIYPARHIEVQILADQHGHVVHLGERDCSLQRNNQKVL----EEAPSVAIGKTLR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +++   A  A Q++G       +FL+D    + +++E+N 
Sbjct: 253 QKIGDAAVRAAQSVGYENAGTIEFLYDENKGEFYFMEMNT 292


>gi|329924771|ref|ZP_08279760.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Paenibacillus
           sp. HGF5]
 gi|328940436|gb|EGG36759.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Paenibacillus
           sp. HGF5]
          Length = 447

 Score = 80.6 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 78/221 (35%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+     I E   I +      A     DK  +KQ +   GVPV P    
Sbjct: 78  AIHPGYGFLAENADFAEICESCNITFIGPSADAINRMGDKAVAKQTMKDAGVPVIPGSDG 137

Query: 114 NRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS-----SSWNHGD 164
               +D        I  P +IK   GG   GI + + ++S+   +  +      ++ +  
Sbjct: 138 LVEDLDEAVMLARDIGYPVIIKATAGGGGKGIRIAEDEESLIKQITNAQQEAQKAFGNAG 197

Query: 165 QLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            + +E+Y+ G   +   ++ D   +   +            K             +  ++
Sbjct: 198 -VYLEKYLTGMKHVEIQIIADKHGNAVHLGERDCSVQRRRQK----LVEEAPCPVLSEEV 252

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              +   A  A +A+   G    +FL      + +++E+N 
Sbjct: 253 RSRMGEAAVRAAKAVNYSGAGTLEFLL-GQDGQFYFMEMNT 292


>gi|327266710|ref|XP_003218147.1| PREDICTED: methylcrotonoyl-CoA carboxylase subunit alpha,
           mitochondrial-like [Anolis carolinensis]
          Length = 711

 Score = 80.6 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 81/221 (36%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H  +G   E+     +     I +      A      K  SK ++S+ GVPV      
Sbjct: 113 AVHPGYGFLSENTEFAELCNQEGIVFIGPPSSAIRDMGIKSTSKAIMSAAGVPVVEGYHG 172

Query: 113 ---VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
               +++  +    I  P +IK ++GG   G+ +   D+     L  +          D 
Sbjct: 173 EDQSDKWLEEQARRIGYPVMIKAVRGGGGKGMRIALSDKEFQEQLESARREAKKSFNDDA 232

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDI 223
           +LIE++VD    +   V GD   +   +           ++          P   I  D+
Sbjct: 233 MLIEKFVDNPRHVEVQVFGDHHGNAVYL-----FERDCSVQRRHQKIIEEAPGPGITPDV 287

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +++   A  A +A+   G    +F+ D      +++E+N 
Sbjct: 288 RRKLGEAAVKAAKAVNYVGAGTVEFIMDREHN-FYFMEMNT 327


>gi|302759505|ref|XP_002963175.1| hypothetical protein SELMODRAFT_438375 [Selaginella moellendorffii]
 gi|300168443|gb|EFJ35046.1| hypothetical protein SELMODRAFT_438375 [Selaginella moellendorffii]
          Length = 499

 Score = 80.6 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 76/220 (34%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
           +LH  +G   E+     + +   + +      +     DK  ++  +   GVP  P    
Sbjct: 125 MLHPGYGFLSENAKFVDMCKDHGLNFIGPNSDSIRTMGDKATARDTMKKAGVPTVPGSDG 184

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS----IPLDLLQSSSWNHGDQ 165
            +      +   H I  P +IK   GG   G+ +  + +     +     ++ +    D 
Sbjct: 185 LVETTEEAIRLAHEIGFPVMIKATAGGGGRGMRLANEPEEFVKLLQQARSEAGAAFGNDG 244

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+Y+     +   V+ D   +   +            K             +  ++ 
Sbjct: 245 VYLERYIKNPRHIEFQVLADKHGNCIHLGERDCSIQRRNQKLL----EEAPSPALTPELR 300

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K +   A  A  +IG  G+   +FL D      +++E+N 
Sbjct: 301 KAMGDAAVAAAASIGYVGVGTIEFLLDES-GAFYFMEMNT 339


>gi|294676752|ref|YP_003577367.1| pyruvate carboxylase [Rhodobacter capsulatus SB 1003]
 gi|294475572|gb|ADE84960.1| pyruvate carboxylase [Rhodobacter capsulatus SB 1003]
          Length = 1144

 Score = 80.6 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 80/221 (36%), Gaps = 18/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       +   I +            DK  +++V  + GVPV P+  V
Sbjct: 78  AIHPGYGLLSENPEFVEACDREGITFIGPKAATMRALGDKASARKVAMAAGVPVIPATEV 137

Query: 114 NRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-----SSSWNHGD 164
                D+       I  P ++K   GG   G+  I     +   + +      +++ +G+
Sbjct: 138 LGEDFDAIKREAAEIGYPLMLKASWGGGGRGMRPILGPDELVEKVREGRREAEAAFGNGE 197

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
             L +  +    +   ++GD     +   +         ++  +       PA  +    
Sbjct: 198 GYLEKMILRARHVEVQLLGD-----SHGGLYHLYERDCTVQRRNQKVVERAPAPYLTEAQ 252

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             EV  LA     A+G +     +FL D  + K +++E+N 
Sbjct: 253 RAEVCALALKIGNAVGYQNAGTVEFLMDMDTSKFYFIEVNP 293


>gi|223936994|ref|ZP_03628902.1| pyruvate carboxylase [bacterium Ellin514]
 gi|223894275|gb|EEF60728.1| pyruvate carboxylase [bacterium Ellin514]
          Length = 1167

 Score = 80.6 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 43/240 (17%), Positives = 85/240 (35%), Gaps = 17/240 (7%)

Query: 35  QIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKM 94
            +D+  S+  +      D+     +G   E+       +   I +        AL  DK 
Sbjct: 81  YLDI-PSIVALAKEKGVDMIHPG-YGFLSENAEFAKACKEAGITFVGPRPELLALMGDKT 138

Query: 95  RSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150
            ++ +    GVP  P     +      +     I  P +IK   GG   G+ V+ K   +
Sbjct: 139 AARALADKVGVPTLPGTENPVEDRTEALKIAKDIGFPLIIKAAFGGGGRGMRVVTKSADL 198

Query: 151 --PLDLLQSSSWNH--GDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205
              LD  ++ +        + +E+Y+     +   VMGD   +V              ++
Sbjct: 199 VDLLDEARNEAGRAFGNPAVFLEKYIPRAKHIEVQVMGDRFGNVL-----HLHERDCSVQ 253

Query: 206 YSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
                   + P   + + + +E+   A    + IG       +FL D  + + F++E+N 
Sbjct: 254 RRHQKVIEIAPSVGLDVKVREELCEAASKIAREIGYDNAGTVEFLLDLDTNQWFFIEMNP 313


>gi|184201150|ref|YP_001855357.1| pyruvate carboxylase [Kocuria rhizophila DC2201]
 gi|183581380|dbj|BAG29851.1| pyruvate carboxylase [Kocuria rhizophila DC2201]
          Length = 1149

 Score = 80.6 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 39/249 (15%), Positives = 83/249 (33%), Gaps = 18/249 (7%)

Query: 28  DAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87
           + G  V        +  V      D  +   +G   E+  +    +   I +        
Sbjct: 53  EEGHPVRAYLDVAEIIRVAKEAGADAIYPG-YGFLSENPELARAAQAEGITFVGPRAEIL 111

Query: 88  ALSMDKMRSKQVVSSCGVPVCPSI--LVNRFTM-DSQHLISPPYVIKPLKGGSSLGIIVI 144
            L+ +K+ + +     G+P   S     +R T+  +   I  P  +K + GG   G+  +
Sbjct: 112 ELAGNKVEALRAARRAGIPTLESSDPSSDRDTLIAAAEKIGYPVFVKAVAGGGGRGMRRV 171

Query: 145 KKDQSIPLDLLQSSSWNH----GDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDF 199
           +  + +P  L  +            + IEQ V     +   ++ D   ++          
Sbjct: 172 ETPEQLPDALDAAMREADTAFGDPTVFIEQAVLRPRHIEVQILADNEGNIV-----HLFE 226

Query: 200 YSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS---R 255
               L+        + PA ++  +I   + R A    + +G       +FL D       
Sbjct: 227 RDCSLQRRHQKVIEIAPAPQLDPEIRDALHRDAVKFAKELGYVNAGTVEFLVDTAGERAG 286

Query: 256 KVFWLEINV 264
           +  ++E+N 
Sbjct: 287 QHVFIEMNP 295


>gi|33600557|ref|NP_888117.1| biotin carboxylase [Bordetella bronchiseptica RB50]
 gi|33568156|emb|CAE32069.1| biotin carboxylase [Bordetella bronchiseptica RB50]
          Length = 456

 Score = 80.6 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 42/223 (18%), Positives = 85/223 (38%), Gaps = 23/223 (10%)

Query: 57  VLHGNFG-----EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
            +H  +G     ED   QA ++   I +      A  +  DK +++++    GVP+ P  
Sbjct: 78  AIHPGYGFLSENED-FAQACID-AGIVFIGPDPGAIRMMGDKAQARKIAKEAGVPIVPGS 135

Query: 112 LVNRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS-----SWNH 162
                 ++        +  P ++K   GG   G+ VI+ +  +   L ++S     ++  
Sbjct: 136 PEPVSDVEEAIKVAREVGYPLLVKAAAGGGGRGMRVIQGEAQLREGLERASMEAKSAFG- 194

Query: 163 GDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL 221
              + IE+Y+     +   V GD   DV  +   +        K             +  
Sbjct: 195 DGSVYIERYISPVRHVEIQVFGDGE-DVIHLGERECSIQRRHQKLL----EESPSPVLSE 249

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +  + +   A    +A+  RG    +F+ D  S + F++E+N 
Sbjct: 250 ETRQRMGEAACALARAVKYRGAGTLEFVMDGKSGEFFFIEMNT 292


>gi|209551996|ref|YP_002283912.1| carbamoyl-phosphate synthase L chain ATP-binding [Rhizobium
           leguminosarum bv. trifolii WSM2304]
 gi|209539589|gb|ACI59520.1| Carbamoyl-phosphate synthase L chain ATP-binding [Rhizobium
           leguminosarum bv. trifolii WSM2304]
          Length = 667

 Score = 80.6 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 76/220 (34%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      LE   I +    + A     DK+ SK++ +  GV   P  + 
Sbjct: 77  AVHPGYGFLSENSAFAEALEKAGIAFIGPPVRAIQAMGDKITSKKIAAEAGVSTVPGHMG 136

Query: 114 NRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
                +        I  P +IK   GG   G+ +   D            ++ +    D+
Sbjct: 137 LIEDAEEAVRISASIGYPVMIKASAGGGGKGMRIAWNDAEAREGFQSSRNEAKNAFGDDR 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE++VD    +   V+GD       +   +        K             +  +  
Sbjct: 197 IFIEKFVDQPRHIEIQVLGDQHGTALYLGERECSIQRRNQK----VIEEAPSPFLDAETR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +   A    +A+G       +F+ D   R  ++LE+N 
Sbjct: 253 RAMGEQAVALAKAVGYFSAGTVEFIVDGA-RNFYFLEMNT 291


>gi|255009219|ref|ZP_05281345.1| phosphoribosylglycinamide formyltransferase 2 [Bacteroides fragilis
           3_1_12]
 gi|313146967|ref|ZP_07809160.1| phosphoribosylglycinamide formyltransferase 2 [Bacteroides fragilis
           3_1_12]
 gi|313135734|gb|EFR53094.1| phosphoribosylglycinamide formyltransferase 2 [Bacteroides fragilis
           3_1_12]
          Length = 388

 Score = 80.6 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 45/255 (17%), Positives = 86/255 (33%), Gaps = 36/255 (14%)

Query: 31  FKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
           ++V  +     +  ++   +PD+    +     E         L +       ++ SA +
Sbjct: 45  YEVFDMLNGEELERIVKKHRPDIIVPEIEAIRTE--------RLYDFEKEGIQVVPSARA 96

Query: 91  MD-----KMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYVIKPLKGGSSLGIIV 143
           ++     K          G+               ++   I  P V+KPL   S  G  +
Sbjct: 97  VNYTMNRKAIRDLAAKELGLKTAKYYYAKSLEELKEAAAKIGFPCVVKPLMSSSGKGQSL 156

Query: 144 IKKDQSIPLDLLQSSSWNHGD--QLLIEQYVDGIE----LTCGVMGDASLDVTEIA-VPK 196
           +K    +        S + GD  +L+IE+++        LT       +L    I  V K
Sbjct: 157 VKSAAELEHAWEYGCSGSRGDIRELIIEEFIKFDSEITLLTVTQKNGPTLFCPPIGHVQK 216

Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256
              Y               PA I     KE + +A    +A+   G+   +F     +  
Sbjct: 217 GGDY----------RESFQPAHIDPAHLKEAEEMAEKVTRALTGAGLWGVEFFLSHENG- 265

Query: 257 VFWLEINVQP---GM 268
           V++ E++ +P   GM
Sbjct: 266 VYFSELSPRPHDTGM 280


>gi|163741496|ref|ZP_02148887.1| methylcrotonyl-CoA carboxylase, alpha subunit [Phaeobacter
           gallaeciensis 2.10]
 gi|161385230|gb|EDQ09608.1| methylcrotonyl-CoA carboxylase, alpha subunit [Phaeobacter
           gallaeciensis 2.10]
          Length = 645

 Score = 80.6 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 40/226 (17%), Positives = 80/226 (35%), Gaps = 25/226 (11%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      +E   + +      A      K  +K ++   GVPV P    
Sbjct: 77  AIHPGYGFLSENPGFVDAVEAAGLSFIGPSADAIRKMGLKDAAKALMEKAGVPVVPGYHG 136

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS-----SSWNHGD 164
           +    +        I  P +IK + GG   G+ +++        L  +     +++    
Sbjct: 137 SNQDTEFLAGEAEKIGYPVLIKAVAGGGGKGMRLVEAPAEFSDALKSAQGEATTAFG-NP 195

Query: 165 QLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            +LIE+Y+     +   V GD +  V              L+          PA  +  +
Sbjct: 196 DVLIEKYIQQPRHIEVQVFGDGTHAV------HLFERDCSLQRRHQKVIEEAPAPGMTAE 249

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR----KVFWLEINV 264
           + + +      A +AIG +G    +F+ D          +++E+N 
Sbjct: 250 MREAMGEAGVRAAEAIGYKGAGTVEFIVDGSDGLRTDGFWFMEMNT 295


>gi|308183189|ref|YP_003927316.1| biotin carboxylase [Helicobacter pylori PeCan4]
 gi|308065374|gb|ADO07266.1| biotin carboxylase [Helicobacter pylori PeCan4]
          Length = 458

 Score = 80.6 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 38/225 (16%), Positives = 78/225 (34%), Gaps = 14/225 (6%)

Query: 49  LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
            + D  F   +G   E+     I     + +        AL  DK ++K V+   G+PV 
Sbjct: 87  FEADAIFPG-YGFLSENQNFVEICSHHSLEFIGPSAKVMALMSDKSKAKIVMKEAGMPVI 145

Query: 109 PS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSW 160
                 +   +   +    I  P +IK   GG   G+ V++    +         ++ S 
Sbjct: 146 EGSDGLLKSYQEAEEIADKIGYPVIIKAAAGGGGRGMRVVEDKSRLKNLYLAAETEALSA 205

Query: 161 NHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI 219
                + +E+++     +   ++ D   +V  +          + K             +
Sbjct: 206 FGDGSVYLEKFINKPKHIEVQILADKHGNVIHVGERDCSVQRRQQK----LIEETPAVVL 261

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              + K +   A  A + IG  G    +FL D   +  +++E+N 
Sbjct: 262 EEGVRKRLLETAIKAAKYIGYVGAGTFEFLLDSNMKDFYFMEMNT 306


>gi|73662984|ref|YP_301765.1| pyruvate carboxylase [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|72495499|dbj|BAE18820.1| pyruvate carboxylase [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 1151

 Score = 80.6 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 36/244 (14%), Positives = 90/244 (36%), Gaps = 25/244 (10%)

Query: 34  SQIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALS 90
           S +D++R   ++    + D+  + +H  +G   E+       +   I +    +    + 
Sbjct: 62  SYLDIER---IIDVAKRADV--DAIHPGYGFLSENETFARRCQEEGIKFIGPRVEHLDMF 116

Query: 91  MDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            DK++++    +  + V P     I      +   +    P +IK   GG   G+ +++ 
Sbjct: 117 GDKVKARTTAINADLRVIPGTDGPIDNQEDAIAFANEAGYPLMIKATSGGGGKGMRIVQS 176

Query: 147 DQSIPLDLLQSSSWNH----GDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYS 201
           +  +     ++ S         ++ IE+Y+D    +   V+GD   ++  +         
Sbjct: 177 EDELEDAFHRAKSEAEKSFGNSEVYIEKYIDNPKHIEVQVIGDEHGNIVHLYE-----RD 231

Query: 202 YELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260
             ++        V P   +  D+ + +   A    + I        +FL      + +++
Sbjct: 232 CSVQRRHQKVVEVAPSVALSDDLRERICEAAIQLMENIEYVNAGTVEFLV--SGEEFYFI 289

Query: 261 EINV 264
           E+N 
Sbjct: 290 EVNP 293


>gi|148381534|ref|YP_001256075.1| acetyl-CoA carboxylase biotin carboxylase [Clostridium botulinum A
           str. ATCC 3502]
 gi|153932361|ref|YP_001385908.1| biotin carboxylase [Clostridium botulinum A str. ATCC 19397]
 gi|153935939|ref|YP_001389315.1| biotin carboxylase [Clostridium botulinum A str. Hall]
 gi|148291018|emb|CAL85155.1| biotin carboxylase [Clostridium botulinum A str. ATCC 3502]
 gi|152928405|gb|ABS33905.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Clostridium
           botulinum A str. ATCC 19397]
 gi|152931853|gb|ABS37352.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Clostridium
           botulinum A str. Hall]
          Length = 448

 Score = 80.6 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 81/220 (36%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  FG   E+     + +   I +            +K  ++ ++   GVPV P    
Sbjct: 77  AIHPGFGFLSENSKFANMCKDCNIVFIGPDSETIDKVGNKSNARDIMIRAGVPVIPGSNG 136

Query: 111 ILVNRFT-MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
           ++ N    ++    I  P V+K   GG   GI ++   +++      + S        D 
Sbjct: 137 VIHNEEEALNIAEEIGYPVVVKASAGGGGRGIRIVHSKENMIKAFNTAKSEAKGAFGDDS 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+++     +   ++GD   ++  +            K            ++  ++ 
Sbjct: 197 MYVEKFIKNPRHIEFQILGDNYGNIIHLGERDCSLQRRNQKVL----EEAPSPRMNEELR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K +  +A  A +A+  +     +FL D      +++E+N 
Sbjct: 253 KRMGDVAIKAAKAVEYKNAGTIEFLLDE-DESFYFMEMNT 291


>gi|256395499|ref|YP_003117063.1| carbamoyl-phosphate synthase L chain ATP- binding [Catenulispora
           acidiphila DSM 44928]
 gi|256361725|gb|ACU75222.1| Carbamoyl-phosphate synthase L chain ATP- binding [Catenulispora
           acidiphila DSM 44928]
          Length = 1837

 Score = 80.6 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 43/234 (18%), Positives = 84/234 (35%), Gaps = 14/234 (5%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
           + +   L     D A+ V  G   ED     + + + + +      A     DK+ +K +
Sbjct: 69  KVLERALVESGADAAW-VGWGFVAEDPAFAELCDRIGVTFIGPDAEAMRKLGDKIGAKLI 127

Query: 100 VSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL- 154
               GVPV P     +      +++   I  P ++K   GG   GI  I     +     
Sbjct: 128 AEEVGVPVAPWSRGPVETLAAAIEAARQIGYPLMLKATAGGGGRGIRAISDVNELIEAFE 187

Query: 155 ---LQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLN 210
               +++       + +E+ V G   +   V+ D       + V          K    +
Sbjct: 188 RTSAEAARAFGSGVVFLERLVTGARHVEVQVIADGQGTAWALGVRDCSIQRRNQKVIEES 247

Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           S+ V    +      +++  A      +G RG +  +FL+ P  ++  +LE+N 
Sbjct: 248 SSPV----LRPKQVAKLKSSAERLAVRVGYRGAATVEFLYHPGDKQFAFLEVNT 297


>gi|209551980|ref|YP_002283896.1| pyruvate carboxylase [Rhizobium leguminosarum bv. trifolii WSM2304]
 gi|209539573|gb|ACI59504.1| pyruvate carboxylase [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 1165

 Score = 80.6 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 77/221 (34%), Gaps = 18/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E        +   I +            +K+ ++ +  S GVPV P+   
Sbjct: 95  AIHPGYGLLSESPEFVDACDKAGIIFIGPRADTMRQLGNKVAARNLAISVGVPVVPATEP 154

Query: 114 NRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
               M         I  P ++K   GG   G+  I+  + +  ++ ++          D+
Sbjct: 155 LPDDMAEVAKMAKEIGYPVMLKASWGGGGRGMRAIRDPKDLAREVTEAKREAMAAFGKDE 214

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           + +E+ V+    +   V+GD   +V  +            K          PA  +    
Sbjct: 215 VYLEKLVERARHVESQVLGDTHGNVVHLFERDCSIQRRNQK-----VVERAPAPYLSEAQ 269

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +E+   +     A    G    ++L D  + K +++E+N 
Sbjct: 270 RQELAAYSLKIAAATNYVGAGTVEYLMDADTGKFYFIEVNP 310


>gi|148657309|ref|YP_001277514.1| acetyl-CoA carboxylase, biotin carboxylase [Roseiflexus sp. RS-1]
 gi|148569419|gb|ABQ91564.1| biotin carboxylase / acetyl-coenzyme A carboxylase carboxyl
           transferase subunit alpha [Roseiflexus sp. RS-1]
          Length = 454

 Score = 80.6 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 77/221 (34%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     I    ++ +      A  +  DK   ++ +   GVP  P    
Sbjct: 77  AIHPGYGFLSENPYFAEICAEYKLTFIGPDAHAIRMMGDKALGRKTMRDAGVPTVPGSRG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGDQ 165
            +      ++  H I  P ++KP  GG   G+ V + +Q +         ++ +      
Sbjct: 137 ELRTLEEAVEVAHQIGYPVLLKPSGGGGGRGMRVAQNEQELIKAYPTSKAEAEAAFGNGA 196

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           LL+E+Y+     +   V+ D                    +          P+  +  ++
Sbjct: 197 LLMEKYLPQVRHVEIQVLADRYGHAI-----HLGERDCSSQRRHQKIVEEAPSPAVTPEL 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +   A    +AI        +FL DP     +++E+N 
Sbjct: 252 RERMGEAALKGVRAINYVNAGTMEFLLDP-DGNFYFIEMNT 291


>gi|15902429|ref|NP_357979.1| acetyl-CoA carboxylase biotin carboxylase subunit [Streptococcus
           pneumoniae R6]
 gi|116515928|ref|YP_815898.1| acetyl-CoA carboxylase biotin carboxylase subunit [Streptococcus
           pneumoniae D39]
 gi|149012176|ref|ZP_01833285.1| biotin carboxylase subunit [Streptococcus pneumoniae SP19-BS75]
 gi|225853999|ref|YP_002735511.1| acetyl-CoA carboxylase biotin carboxylase subunit [Streptococcus
           pneumoniae JJA]
 gi|15457946|gb|AAK99189.1| Biotin carboxylase (a subunit of acetyl-CoA carboxylase (ACC)
           [Streptococcus pneumoniae R6]
 gi|116076504|gb|ABJ54224.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus
           pneumoniae D39]
 gi|147763778|gb|EDK70712.1| biotin carboxylase subunit [Streptococcus pneumoniae SP19-BS75]
 gi|225723885|gb|ACO19738.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus
           pneumoniae JJA]
          Length = 455

 Score = 80.6 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 41/220 (18%), Positives = 76/220 (34%), Gaps = 16/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  FG   E+     + E + I +         +  DK+ ++  +   GVPV P    
Sbjct: 77  AIHPGFGFLSENSKFATMCEEVGIKFIGPSGHVMDMMGDKINARAQMIKAGVPVIPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
            +  +   +     I  P ++K   GG   GI  ++K   +      +SS          
Sbjct: 137 EVHNSEEALIVAEKIGYPVMLKASAGGGGKGIRKVEKPDDLVSAFETASSEAKANYGNGA 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+ +     +   ++GD    V  +            K             I   + 
Sbjct: 197 MYIERVIYPARHIEVQILGDEHGHVIHLGERDCSLQRNNQKVL----EESPSIAIGKTLR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            E+   A  A + +G       +FL D  SR  +++E+N 
Sbjct: 253 HEIGAAAVRAAEFVGYENAGTIEFLLDEASRNFYFMEMNT 292


>gi|329937927|ref|ZP_08287409.1| acetyl/propionyl CoA carboxylase subunit alpha [Streptomyces
           griseoaurantiacus M045]
 gi|329302884|gb|EGG46773.1| acetyl/propionyl CoA carboxylase subunit alpha [Streptomyces
           griseoaurantiacus M045]
          Length = 649

 Score = 80.6 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 83/221 (37%), Gaps = 17/221 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---- 109
            +H  +G   E+           + +      A AL  DK+R+K+ V + GVPV P    
Sbjct: 77  AVHPGYGFLAENAAFARACAEAGLVFIGPPAEAIALMGDKIRAKETVRAAGVPVVPGSSG 136

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
           S L +     +   I  P ++KP  GG   G+ +++   ++  ++  +          D 
Sbjct: 137 SGLTDEELAAAAREIGAPVLLKPSAGGGGKGMRLVRDTATLAEEIAAARREARASFGDDT 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           LL+E+++D    +   V+ DA  +V  +   +        K             +     
Sbjct: 197 LLVERWIDRPRHIEIQVLADAHGNVVHLGERECSLQRRHQKI----VEEAPSVLLDEATR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLS-RKVFWLEINV 264
             +   A  A ++ G  G    +F+         +++E+N 
Sbjct: 253 AAMGEAAVQAARSCGYTGAGTVEFIVPGRDPSAYYFMEMNT 293


>gi|325972752|ref|YP_004248943.1| carbamoyl-phosphate synthase, large subunit [Spirochaeta sp. Buddy]
 gi|324027990|gb|ADY14749.1| carbamoyl-phosphate synthase, large subunit [Spirochaeta sp. Buddy]
          Length = 1069

 Score = 80.6 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 53/279 (18%), Positives = 105/279 (37%), Gaps = 37/279 (13%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL++ G++V  ++ + +                     V  +    +PD    
Sbjct: 29  SGTQAVKALKEEGYEVILLNPNPATVMTTPSLADTVYLDPLKIEYVEQIFQRERPDAILT 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G  G +  ++     +LE   +    S I +  L+ D+   KQVV S G+    S +
Sbjct: 89  TMGGQSGLNLALELDKAGLLEQYGVEVIGSSITSIKLAEDRGAFKQVVQSLGLESAKSFV 148

Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           V+              P +I+P      +G  +   +Q  P  L  +   +   + LIE+
Sbjct: 149 VHSLAEAQSLLQDFPYPRIIRPSYTLGGMGGSIANNEQEFPDLLCHALETSPTGEALIEE 208

Query: 171 YVDG-IELTCGVMGDASL-DVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            + G  E    VM D +   +   ++   D           +S  + P + +   +Y+ +
Sbjct: 209 SLIGWKEFEMEVMRDKADNAIIVCSIENIDPMGVHT----GDSITIAPIQTLDDKLYQTM 264

Query: 228 QRLAFLAHQAIG--CRGISRSDFLFDPLSRKVFWLEINV 264
           +  +    +A+G  C G S   F   P + ++  +E+N 
Sbjct: 265 RNASIAILRAVGVDCGG-SNVQFAVHPETARMVVIEMNP 302



 Score = 52.0 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/221 (14%), Positives = 77/221 (34%), Gaps = 23/221 (10%)

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGS 137
             + +     + D+ +   +V+  G+    +    R    +     +  P +I+P     
Sbjct: 657 VGTSLKGLLDAGDRGKFSALVTELGLRQPKNRSAKRTEDILPLAKEVGFPVLIRPSFVLG 716

Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC--GVMGDASLDVTEIAVP 195
             G+ ++  ++++    L          +L++Q+++         V    SL V  I   
Sbjct: 717 GRGMYIVYDEEALGR--LTHLEATQEAPVLVDQFLEDAFEYDLDAVCDGKSLYVGGILQH 774

Query: 196 KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255
                 +    S  ++    P K    I +++Q  A     A+  +G+    F       
Sbjct: 775 IEAAGIH----SGDSAAVFPPYKSSPQILQQMQEWAHKLAIALDTKGLMNIQF--AAKDG 828

Query: 256 KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            ++ +E+N +   T     P ++  +G         ++E A
Sbjct: 829 LLYLIEVNPRASRT----VPFISKTSGVD-------LIETA 858


>gi|302799709|ref|XP_002981613.1| hypothetical protein SELMODRAFT_154584 [Selaginella moellendorffii]
 gi|300150779|gb|EFJ17428.1| hypothetical protein SELMODRAFT_154584 [Selaginella moellendorffii]
          Length = 499

 Score = 80.6 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 76/220 (34%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
           +LH  +G   E+     + +   + +      +     DK  ++  +   GVP  P    
Sbjct: 125 MLHPGYGFLSENAKFVDMCKDHGLNFIGPNSDSIRTMGDKATARDTMKKAGVPTVPGSDG 184

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS----IPLDLLQSSSWNHGDQ 165
            +      +   H I  P +IK   GG   G+ +  + +     +     ++ +    D 
Sbjct: 185 LVETTEEAIRLAHEIGFPVMIKATAGGGGRGMRLANEPEEFVKLLQQARSEAGAAFGNDG 244

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+Y+     +   V+ D   +   +            K             +  ++ 
Sbjct: 245 VYLERYIKNPRHIEFQVLADKHGNCIHLGERDCSIQRRNQKLL----EEAPSPALTPELR 300

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K +   A  A  +IG  G+   +FL D      +++E+N 
Sbjct: 301 KAMGDAAVAAAASIGYVGVGTIEFLLDES-GSFYFMEMNT 339


>gi|317133556|ref|YP_004092870.1| acetyl-CoA carboxylase, biotin carboxylase [Ethanoligenens
           harbinense YUAN-3]
 gi|315471535|gb|ADU28139.1| acetyl-CoA carboxylase, biotin carboxylase [Ethanoligenens
           harbinense YUAN-3]
          Length = 458

 Score = 80.6 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 77/221 (34%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  FG   E+     + +   + +      +  L  DK R+++ +   GVPV P    
Sbjct: 77  AIHPGFGFLSENARFAYLCKRCNVIFIGPDASSIELMGDKARARETMQKAGVPVVPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS-----SSWNHGD 164
            I            I  P ++K   GG   GI  +     +   +  +     +S+ +  
Sbjct: 137 LIESLEDARKVADAIGYPVMVKATAGGGGRGIREVHTPDEMEDAIAAARGEAGASFGNEG 196

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             L +  +D   +   ++ D + +   +           L+          PA I  D  
Sbjct: 197 VYLEKYIIDPHHVEIQILADQAGNTVYLGE-----RDCSLQRRHQKVLEESPAIILDDKM 251

Query: 225 KEVQ-RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + V    A  A +A   +     +FL D  +   +++E+N 
Sbjct: 252 RRVMGETAVRAAKACRYQNAGTIEFLVDK-NHNFYFMEMNT 291


>gi|150951195|ref|XP_001387473.2| urea amidolyase [Scheffersomyces stipitis CBS 6054]
 gi|149388396|gb|EAZ63450.2| urea amidolyase [Pichia stipitis CBS 6054]
          Length = 1822

 Score = 80.6 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 28/196 (14%), Positives = 72/196 (36%), Gaps = 12/196 (6%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---ISPPYVIKP 132
            I +      A      K  ++++    GVP+ P   + +  ++++ +   +  P ++K 
Sbjct: 723 GIVFVGPSGDAIRKLGLKHSAREIAEKAGVPLVPGSGLVKDALEAKEIAAKLEYPVMVKS 782

Query: 133 LKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQLLIEQYV-DGIELTCGVMGDASL 187
             GG  +G+  +  ++ I         Q  S+     + +E++V D   +   + GD   
Sbjct: 783 TAGGGGIGLQKVDSEKDIERVFETVQHQGKSYFGDAGVFLERFVEDARHVEVQMFGDGKG 842

Query: 188 DVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
               +            K             +P    ++++  A     ++  +     +
Sbjct: 843 RAIALGERDCSLQRRNQK----VIEETPAPNLPEATRQKMRDAAESLGASMNYKCAGTVE 898

Query: 248 FLFDPLSRKVFWLEIN 263
           F++D    + ++LE+N
Sbjct: 899 FIYDEKRDEFYFLEVN 914


>gi|323466240|gb|ADX69927.1| Carbamoyl-phosphate synthase, large subunit [Lactobacillus
           helveticus H10]
          Length = 1062

 Score = 80.6 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 42/295 (14%), Positives = 94/295 (31%), Gaps = 38/295 (12%)

Query: 24  SALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ----- 69
            AL+  G++   I         D   S  L    L  +   NV      E  +VQ     
Sbjct: 579 KALQKMGYEAIVINSNPETVSTDFSISDKLYFEPLTLEDVLNVCDLEKPEGVIVQFGGQT 638

Query: 70  -----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQH 122
                A LE   I    + +     + D+    +++    +     +        + +  
Sbjct: 639 SINLAAGLEKHGIKILGTKVKDVNRAEDRELFDEIIKKLKLNQPQGLTATTHEGVIAAAE 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            +  P +++P        + ++     +   L           +L++ Y+DG E     +
Sbjct: 699 KLGYPVLVRPSYVLGGKAMEIVYTKAELEEYLQDHVDIAADHPILVDDYLDGRECDVDAI 758

Query: 183 GDAS---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAI 238
            D     L      +  +  +S        +S  V P +    ++  ++  +       +
Sbjct: 759 CDGKTVLLPGIMEHIEHAGVHS-------GDSMAVYPPQTFSDEVKDKITEVTRKLALEL 811

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            C GI    F+      +V+ +E+N +   T     P ++   G    ++   ++
Sbjct: 812 NCVGIMNIQFIVR--DGEVYVIEVNPRASRT----VPFLSKITGIEMAQVATRVI 860



 Score = 72.1 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 49/289 (16%), Positives = 95/289 (32%), Gaps = 39/289 (13%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI---------DVD------------RSVGLV 45
           G ++E + S   G     AL D G++V  +         D               SV  +
Sbjct: 21  GQAAEFDYS---GTQACLALRDEGYEVVLVNSNPATIMTDTTIADKVYIEPLTVDSVSRI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +    PD     L G  G +  +      IL+ L I    + + +   + D+ + K++  
Sbjct: 78  IRQEYPDAILPTLGGQVGLNMALALAKTGILDELHIELLGTKLASIEQAEDREKFKELCQ 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G PV PS  V      +     I  P +++P       G  +      +         
Sbjct: 138 KLGEPVPPSKTVKTVEDALAFGDEIGYPIIVRPAFTMGGTGGGICHNHDELAEIAKNGLE 197

Query: 160 WNHGDQLLIEQYVDG---IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216
            +   + LIE+ + G   IE       + +  +            +     + +S    P
Sbjct: 198 LSPVTECLIEKSIAGYKEIEFEVMRDHNNNAMIVCCMENFDPVGIH-----TGDSIVFSP 252

Query: 217 AK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           ++ +    Y+ ++  +    +A+   G        DP S     +E+N 
Sbjct: 253 SQTLSDKEYQMLRDCSLRLIRALKIEGGCNVQLALDPNSFNYDVIEVNP 301


>gi|257875735|ref|ZP_05655388.1| carbamoyl-phosphate synthase [Enterococcus casseliflavus EC20]
 gi|257809901|gb|EEV38721.1| carbamoyl-phosphate synthase [Enterococcus casseliflavus EC20]
          Length = 1069

 Score = 80.6 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 50/296 (16%), Positives = 108/296 (36%), Gaps = 34/296 (11%)

Query: 25  ALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNVLHGNFG 63
           AL + G++V  ++        D+ +                +L   +PD     L G  G
Sbjct: 44  ALREEGYEVVLVNSNPATIMTDKEIADKVYIEPITFEFVSRILRKEQPDAILPTLGGQTG 103

Query: 64  EDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFT 117
            +  ++     IL+ L I    + + A   + D+   KQ++     P+  S +V+     
Sbjct: 104 LNMAMELANSGILDELGIELLGTKLAAIDQAEDRDLFKQLMEELDQPIPESEIVSTVEAA 163

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IE 176
           ++    I  P +++P       G  +   ++ +          +   Q LIE+ + G  E
Sbjct: 164 VEFAKKIGFPIIVRPAFTLGGTGGGMCNNEEELRQIAENGLKLSPVTQCLIERSIAGYKE 223

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +   VM D++ +   I V   + +     ++  +        +    Y+ ++  +    +
Sbjct: 224 IEYEVMRDSADNA--IVVCNMENFDPVGIHTGDSIVFAPSQTLSDHEYQMLRDASLKIIR 281

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           A+   G        DP S   + +E+N  P ++  S     +   GY   +L   +
Sbjct: 282 ALKIEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAKI 333



 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 24/210 (11%), Positives = 71/210 (33%), Gaps = 12/210 (5%)

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKP 132
             +    + I     + ++   +Q + +  +P  P       +  +     I  P +++P
Sbjct: 657 AGVKILGTSIEDLDRAENRDLFEQALQALDIPQPPGDTATNEQEAIAIAQEIGYPVLVRP 716

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192
                   + +++    +   +  +   +    +L+++Y+ G E     + D    +   
Sbjct: 717 SYVLGGRAMEIVENQADLEDYMRHAVKASPEHPVLVDRYLVGKECEVDAICDGKTVLIPG 776

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            +   +       +S  +     P  +  ++   ++         + C G+    F+   
Sbjct: 777 IMEHIERAGV---HSGDSMAVYPPQNLSDELIATIEEYTKRLALGLNCIGMMNIQFVIHE 833

Query: 253 LSRKVFWLEIN-----VQPGMTPVSIFPEM 277
              KV+ +E+N       P ++ V+  P  
Sbjct: 834 --NKVYVIEVNPRASRTVPFLSKVTEIPMA 861


>gi|257866102|ref|ZP_05645755.1| carbamoyl-phosphate synthase [Enterococcus casseliflavus EC30]
 gi|257872433|ref|ZP_05652086.1| carbamoyl-phosphate synthase [Enterococcus casseliflavus EC10]
 gi|257800036|gb|EEV29088.1| carbamoyl-phosphate synthase [Enterococcus casseliflavus EC30]
 gi|257806597|gb|EEV35419.1| carbamoyl-phosphate synthase [Enterococcus casseliflavus EC10]
          Length = 1069

 Score = 80.6 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 50/296 (16%), Positives = 108/296 (36%), Gaps = 34/296 (11%)

Query: 25  ALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNVLHGNFG 63
           AL + G++V  ++        D+ +                +L   +PD     L G  G
Sbjct: 44  ALREEGYEVVLVNSNPATIMTDKEIADKVYIEPITFEFVSRILRKEQPDAILPTLGGQTG 103

Query: 64  EDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFT 117
            +  ++     IL+ L I    + + A   + D+   KQ++     P+  S +V+     
Sbjct: 104 LNMAMELANSGILDELGIELLGTKLAAIDQAEDRDLFKQLMEELDQPIPESEIVSTVEAA 163

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IE 176
           ++    I  P +++P       G  +   ++ +          +   Q LIE+ + G  E
Sbjct: 164 VEFAKKIGFPIIVRPAFTLGGTGGGMCNNEEELRQIAENGLKLSPVTQCLIERSIAGYKE 223

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +   VM D++ +   I V   + +     ++  +        +    Y+ ++  +    +
Sbjct: 224 IEYEVMRDSADNA--IVVCNMENFDPVGIHTGDSIVFAPSQTLSDHEYQMLRDASLKIIR 281

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           A+   G        DP S   + +E+N  P ++  S     +   GY   +L   +
Sbjct: 282 ALKIEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAKI 333



 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 24/210 (11%), Positives = 71/210 (33%), Gaps = 12/210 (5%)

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKP 132
             +    + I     + ++   +Q + +  +P  P       +  +     I  P +++P
Sbjct: 657 AGVKILGTSIEDLDRAENRDLFEQALQALDIPQPPGDTATNEQEAIAIAQEIGYPVLVRP 716

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192
                   + +++    +   +  +   +    +L+++Y+ G E     + D    +   
Sbjct: 717 SYVLGGRAMEIVENQADLEDYMRHAVKASPEHPVLVDRYLVGKECEVDAICDGKTVLIPG 776

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            +   +       +S  +     P  +  ++   ++         + C G+    F+   
Sbjct: 777 IMEHIERAGV---HSGDSMAVYPPQNLSDELIATIEEYTKRLALGLNCIGMMNIQFVIHE 833

Query: 253 LSRKVFWLEIN-----VQPGMTPVSIFPEM 277
              KV+ +E+N       P ++ V+  P  
Sbjct: 834 --NKVYVIEVNPRASRTVPFLSKVTEIPMA 861


>gi|325570248|ref|ZP_08146114.1| carbamoyl-phosphate synthase [Enterococcus casseliflavus ATCC
           12755]
 gi|325156731|gb|EGC68905.1| carbamoyl-phosphate synthase [Enterococcus casseliflavus ATCC
           12755]
          Length = 1061

 Score = 80.6 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 50/296 (16%), Positives = 108/296 (36%), Gaps = 34/296 (11%)

Query: 25  ALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNVLHGNFG 63
           AL + G++V  ++        D+ +                +L   +PD     L G  G
Sbjct: 36  ALREEGYEVVLVNSNPATIMTDKEIADKVYIEPITFEFVSRILRKEQPDAILPTLGGQTG 95

Query: 64  EDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFT 117
            +  ++     IL+ L I    + + A   + D+   KQ++     P+  S +V+     
Sbjct: 96  LNMAMELANSGILDELGIELLGTKLAAIDQAEDRDLFKQLMEELDQPIPESEIVSTVEAA 155

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IE 176
           ++    I  P +++P       G  +   ++ +          +   Q LIE+ + G  E
Sbjct: 156 VEFAKKIGFPIIVRPAFTLGGTGGGMCNNEEELRQIAENGLKLSPVTQCLIERSIAGFKE 215

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +   VM D++ +   I V   + +     ++  +        +    Y+ ++  +    +
Sbjct: 216 IEYEVMRDSADNA--IVVCNMENFDPVGIHTGDSIVFAPSQTLSDHEYQMLRDASLKIIR 273

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           A+   G        DP S   + +E+N  P ++  S     +   GY   +L   +
Sbjct: 274 ALKIEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAKI 325



 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 24/210 (11%), Positives = 71/210 (33%), Gaps = 12/210 (5%)

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKP 132
             +    + I     + ++   +Q + +  +P  P       +  +     I  P +++P
Sbjct: 649 AGVKILGTSIEDLDRAENRDLFEQALQALDIPQPPGDTATNEQEAIAIAQKIGYPVLVRP 708

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192
                   + +++    +   +  +   +    +L+++Y+ G E     + D    +   
Sbjct: 709 SYVLGGRAMEIVENQADLEDYMRHAVKASPEHPVLVDRYLVGKECEVDAICDGKTVLIPG 768

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            +   +       +S  +     P  +  ++   ++         + C G+    F+   
Sbjct: 769 IMEHIERAGV---HSGDSMAVYPPQNLSDELIATIEEYTKRLALGLNCIGMMNIQFVIHE 825

Query: 253 LSRKVFWLEIN-----VQPGMTPVSIFPEM 277
              KV+ +E+N       P ++ V+  P  
Sbjct: 826 --NKVYVIEVNPRASRTVPFLSKVTEIPMA 853


>gi|325845214|ref|ZP_08168521.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Turicibacter
           sp. HGF1]
 gi|325488758|gb|EGC91160.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Turicibacter
           sp. HGF1]
          Length = 450

 Score = 80.6 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 38/224 (16%), Positives = 83/224 (37%), Gaps = 25/224 (11%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  FG   E+    +++E L + +            +K ++++++ +  VPV P    
Sbjct: 77  AIHPGFGFLSENSTFASLVEELGLKFIGPKGSIIDNMGNKSKAREMMIAANVPVVPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP-----LDLLQSSSWNHGD 164
            I            I  P ++K   GG   G+ VI  +           L    S+   D
Sbjct: 137 LIESIEQGKRVAKEIGYPVLVKASAGGGGRGMRVINSEDEFEDLFQTAKLEAKMSFG-DD 195

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK---IP 220
            + +E++++    +   ++ D   +V  +       Y  +      N   +  A    + 
Sbjct: 196 SMYMEKFIENPRHIEFQILADQFGNVVHL-------YDRDCSVQRRNQKVIEEAPSPVLD 248

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
               +++  +A LA + +G       +FL D      +++E+N 
Sbjct: 249 ELTRQKMGEIAVLAAKTVGYENAGTIEFLLDKHQN-FYFIEMNT 291


>gi|293374585|ref|ZP_06620902.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Turicibacter
           sanguinis PC909]
 gi|292646787|gb|EFF64780.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Turicibacter
           sanguinis PC909]
          Length = 450

 Score = 80.6 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 38/224 (16%), Positives = 83/224 (37%), Gaps = 25/224 (11%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  FG   E+    +++E L + +            +K ++++++ +  VPV P    
Sbjct: 77  AIHPGFGFLSENSTFASLVEELGLKFIGPKGSIIDNMGNKSKAREMMIAANVPVVPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP-----LDLLQSSSWNHGD 164
            I            I  P ++K   GG   G+ VI  +           L    S+   D
Sbjct: 137 LIESIEQGKRVAKEIGYPVLVKASAGGGGRGMRVINSEDEFEDLFQTAKLEAKMSFG-DD 195

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK---IP 220
            + +E++++    +   ++ D   +V  +       Y  +      N   +  A    + 
Sbjct: 196 SMYMEKFIENPRHIEFQILADQFGNVVHL-------YDRDCSVQRRNQKVIEEAPSPVLD 248

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
               +++  +A LA + +G       +FL D      +++E+N 
Sbjct: 249 ELTRQKMGEIAVLAAKTVGYENAGTIEFLLDKHQN-FYFIEMNT 291


>gi|317122854|ref|YP_004102857.1| carbamoyl-phosphate synthase large subunit [Thermaerobacter
           marianensis DSM 12885]
 gi|315592834|gb|ADU52130.1| carbamoyl-phosphate synthase large subunit [Thermaerobacter
           marianensis DSM 12885]
          Length = 1246

 Score = 80.2 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 51/303 (16%), Positives = 107/303 (35%), Gaps = 35/303 (11%)

Query: 11  EREVSLSSGKACASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH-- 59
           E + S  S  A    L   G++   +         D D +  L    L P+   NVL   
Sbjct: 696 EFDYS--SVHAV-RTLRALGYRAVIVNNNPETVSTDFDTADRLYFEPLTPEDVRNVLDLE 752

Query: 60  ---GNFGEDG-----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
              G   + G      + A L    +    +   +  ++  + R  ++++  G+   P  
Sbjct: 753 QPVGVLAQFGGQTAVNLVAPLAAAGVRILGTSPESVDVAESRERFDRLLARLGLQRPPGA 812

Query: 112 LVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
                   + +   I  P +++P        + V +  + +   L  ++       + ++
Sbjct: 813 AARSVAEALAAAERIGYPVIVRPSYVLGGRAMQVARSPEELARYLATAARVAGDRPVWVD 872

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQ 228
           +Y+ G+EL    + D    V    +   +           +S  V+PA  +P ++   V+
Sbjct: 873 RYIAGMELEVDAVADGETVVIPAVMRHIERAGVHS----GDSIAVVPAPGVPGEVLARVE 928

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
                  +A+  RG+    F++D    +++ LE+N +   T     P +    G    EL
Sbjct: 929 AATVELARALQVRGVINLQFVWD--GEELYVLEVNPRASRT----VPFITKATGVPLTEL 982

Query: 289 LLW 291
              
Sbjct: 983 ATR 985



 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 48/287 (16%), Positives = 103/287 (35%), Gaps = 35/287 (12%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI---------DVD------------RSVGLV 45
           G ++E + S   G     AL++ G +V  +         D                   V
Sbjct: 65  GQAAEFDYS---GTQACRALKEEGLEVVLLNSNPATVMTDPGTADRIYVEPLTAEFAEAV 121

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   +PD     L G  G +  ++     +L+   +    +   A   + D+   KQ++ 
Sbjct: 122 IRQERPDALLPTLGGQVGLNLAMELVRAGVLDRYGVRLLGTPPEAIQRAEDRDAFKQLML 181

Query: 102 SCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
           S G PV  S +V  +   +     +  P + +P       G  + + ++ +   + +  +
Sbjct: 182 SIGEPVPQSTIVRSYDEALAFARRVGFPVIARPGYTLGGTGGGIARDERELEALIDRGLA 241

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA- 217
            +   Q+L+E+ + G  E+   V+ D + +   I   ++      +   + +S  V PA 
Sbjct: 242 ASPIGQVLLEESLLGWKEIEFEVIRDGAGNAIAICSMENVD---PVGVHTGDSIVVAPAL 298

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +     + ++  +     AIG  G         P       +E+N 
Sbjct: 299 TLTDRQLQRLRSASLRIVDAIGVEGGCNVQLALRPDGAAYRVIEVNP 345


>gi|255994596|ref|ZP_05427731.1| pyruvate carboxylase [Eubacterium saphenum ATCC 49989]
 gi|255993309|gb|EEU03398.1| pyruvate carboxylase [Eubacterium saphenum ATCC 49989]
          Length = 1144

 Score = 80.2 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 75/221 (33%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+       E   I +            DK++SK V    GVP  P +  
Sbjct: 81  AIHPGYGFLSENVEFAKACEDAGIVFIGPDYKMMGQLGDKIQSKLVAQEVGVPTIPGVEE 140

Query: 112 --LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL----DLLQSSSWNHGDQ 165
                +   +       P ++K   GG   G+ ++  ++ +       L ++      D 
Sbjct: 141 AIPSEKAAKEFAEKCGYPVMLKAAAGGGGRGMRIVHSEEELIPSFRSALSEAKKAFGIDD 200

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDI 223
           + IE+Y++    +   ++GD   ++  +            K          PA  +    
Sbjct: 201 IFIEKYLESPKHIEVQILGDNYGNLVHLYERDCSIQRRHQK-----VVEFTPALCLDDAK 255

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            K +   A    + +  R     +FL D      +++E+N 
Sbjct: 256 RKAICEDALKIAKFVNYRSAGTVEFLLDKHGNH-YFIEMNP 295


>gi|254487851|ref|ZP_05101056.1| pyruvate carboxylase [Roseobacter sp. GAI101]
 gi|214044720|gb|EEB85358.1| pyruvate carboxylase [Roseobacter sp. GAI101]
          Length = 1146

 Score = 80.2 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 76/221 (34%), Gaps = 18/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       E   I +            DK  +++V    GVPV P+  V
Sbjct: 80  AIHPGYGLLSENPDFVDACEQNGITFIGPRAETMRALGDKASARRVAVEAGVPVIPATEV 139

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGD 164
               MD        +  P ++K   GG   G+  I+ ++ +   +        +++ +G+
Sbjct: 140 LGDDMDLVRKQAAEVGYPLMLKASWGGGGRGMRPIESEKELEEKVLEGRREAEAAFGNGE 199

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
             L +  +    +   ++GD   ++              ++  +       PA  +    
Sbjct: 200 GYLEKMILKARHVEVQILGDKHGEIY-----HLFERDCSVQRRNQKVVERAPAPYLTEAQ 254

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             E+  L       +        +FL D    K +++E+N 
Sbjct: 255 RAEICELGRKICAHVNYECAGTVEFLMDMADDKFYFIEVNP 295


>gi|322386780|ref|ZP_08060404.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus cristatus
           ATCC 51100]
 gi|321269062|gb|EFX51998.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus cristatus
           ATCC 51100]
          Length = 455

 Score = 80.2 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 77/220 (35%), Gaps = 16/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  FG   E+     + E + I +         L  DK+ ++  +    VPV P    
Sbjct: 77  AIHPGFGFLSENSKFATMCEEVGIKFIGPSGAVMDLMGDKINARAQMIKAKVPVIPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
            +  +   ++    I  P ++K   GG   GI  ++K + +         ++ +      
Sbjct: 137 EVHTSEEALEVAKKIGYPVMLKASAGGGGKGIRKVEKAEDLVAAFESASSEAKAAFGNGA 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+ +     +   ++ D    V  +            K             I   + 
Sbjct: 197 MYMERVIYPARHIEVQILADQQGHVVHLGERDCSLQRNNQKVL----EESPSVAIGKTLR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +++   A  A +++G       +FL D    + +++E+N 
Sbjct: 253 QQIGEAAVRAAESVGYENAGTIEFLLDEAKGEFYFMEMNT 292


>gi|110679314|ref|YP_682321.1| propionyl-CoA carboxylase, alpha subunit [Roseobacter denitrificans
           OCh 114]
 gi|109455430|gb|ABG31635.1| propionyl-CoA carboxylase, alpha subunit [Roseobacter denitrificans
           OCh 114]
          Length = 681

 Score = 80.2 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 75/221 (33%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      LE   + +    + A     DK+ SK++    GV   P  + 
Sbjct: 77  AVHPGYGFLSENAKFAQALEAAGVAFVGPPVGAIEKMGDKITSKKIAKEAGVSTVPGYMG 136

Query: 114 NRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGD 164
                +      + +  P +IK   GG   G+ +   D              ++S+   D
Sbjct: 137 LIEDAEDAVKISNEVGYPVMIKASAGGGGKGMRIAWNDDEAREGFQSSKNEAANSFG-DD 195

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           ++ IE++V     +   V+ D   +   +   +        K             +    
Sbjct: 196 RIFIEKFVTQPRHIEIQVLCDTHGNGIYLGERECSIQRRNQK----VVEEAPSPFLDEAT 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            K +   A    QA+G       +F+ D   +  ++LE+N 
Sbjct: 252 RKAMGEQAVALAQAVGYASAGTVEFIVDG-DKNFYFLEMNT 291


>gi|74227655|dbj|BAE35680.1| unnamed protein product [Mus musculus]
          Length = 494

 Score = 80.2 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 86/221 (38%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H  +G   E+     + +   I +      A      K  SK ++++ GVPV      
Sbjct: 54  AIHPGYGFLSENMEFAELCKQEGIIFIGPPSSAIRDMGIKSTSKSIMAAAGVPVVEGYHG 113

Query: 113 ---VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD----QSIPLDLLQSSSWNHGDQ 165
               ++   +    I  P +IK ++GG   G+ +++ +    + +     ++    + D 
Sbjct: 114 KDQSDQCLREHAGKIGYPVMIKAVRGGGGKGMRIVRSEREFQEQLESARREAKKSFNDDA 173

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           +LIE++VD    +   V GD   +   +           ++          PA  I  ++
Sbjct: 174 MLIEKFVDTPRHVEVQVFGDHHGNAVYL-----FERDCSVQRRHQKIIEEAPAPGINPEV 228

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +++   A  A +A+   G    +F+ D      +++E+N 
Sbjct: 229 RRKLGEAAVRAAKAVKYVGAGTVEFIMDSRHN-FYFMEMNT 268


>gi|25027269|ref|NP_737323.1| putative urea carboxylase [Corynebacterium efficiens YS-314]
 gi|259506595|ref|ZP_05749497.1| urea carboxylase [Corynebacterium efficiens YS-314]
 gi|23492550|dbj|BAC17523.1| putative urea carboxylase [Corynebacterium efficiens YS-314]
 gi|259165793|gb|EEW50347.1| urea carboxylase [Corynebacterium efficiens YS-314]
          Length = 1202

 Score = 80.2 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 40/243 (16%), Positives = 85/243 (34%), Gaps = 22/243 (9%)

Query: 34  SQIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALS 90
           S +D+DR + + +           +H  +G   E+     ++E   I +           
Sbjct: 59  SYLDIDRVLDIAVKSGAG-----AIHPGYGFLSENAEFARLVEAAGIAFVGPTPEQLDKF 113

Query: 91  MDKMRSKQVVSSCGVPVCPSILVNRFTMDS---QHLISPPYVIKPLKGGSSLGIIVIKKD 147
             K  ++Q+  + GVP+ P   +     ++      I  P ++K   GG  +G+      
Sbjct: 114 GIKHTARQLAEAAGVPLLPGTGLLSSADEAVAKAQEIGLPVMVKASNGGGGIGMQSCTGL 173

Query: 148 QSIPLDL-----LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSY 202
             +         L   ++  G   L         +   V GD +      AV        
Sbjct: 174 DQVREAFTRVQRLAEQNFGSGGVFLERLVRPARHIEVQVFGDGAG-----AVAVFGDRDC 228

Query: 203 ELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
            L+  +       PA  +P  + + + + +     ++  R     +F++DP   + ++LE
Sbjct: 229 SLQRRNQKVVEEAPAPDLPPVVRQTIHQASRALAASVDYRSAGTVEFIYDPHREEAYFLE 288

Query: 262 INV 264
           +N 
Sbjct: 289 MNT 291


>gi|217977540|ref|YP_002361687.1| pyruvate carboxylase [Methylocella silvestris BL2]
 gi|217502916|gb|ACK50325.1| pyruvate carboxylase [Methylocella silvestris BL2]
          Length = 1147

 Score = 80.2 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 35/238 (14%), Positives = 79/238 (33%), Gaps = 22/238 (9%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRS 96
             V  V    K D     +H  +G   E            I +            +K+ +
Sbjct: 67  EEVIRVAREAKVD----AIHPGYGFLSESPEFADACAEAGIIFIGPSPQTMRELGNKVAA 122

Query: 97  KQVVSSCGVPVCPSI-LVNRFTMDSQHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152
           + +    G PV P+   +     + + L   +  P ++K   GG   G+  I+ +  +  
Sbjct: 123 RNIAVRSGAPVMPATDPLPDDPAEIKRLALGVGYPVMLKASWGGGGRGMRPIESEDKLLD 182

Query: 153 DLLQSS-----SWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYS 207
            +L +      ++   +  L +  +    +   ++GD+  ++  +            K  
Sbjct: 183 AVLSAKREAKNAFGKDEVYLEKLVLRARHVEVQILGDSHGNLVHLFERDCSIQRRHQK-- 240

Query: 208 SLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
                   PA  +     + +   A    +A    G    +FL D  + + +++E+N 
Sbjct: 241 ---VVERAPAPYLDEATRQGLCEAALKIGRATKYCGAGTVEFLLDADTNQFYFIEVNP 295


>gi|153008453|ref|YP_001369668.1| pyruvate carboxylase [Ochrobactrum anthropi ATCC 49188]
 gi|151560341|gb|ABS13839.1| pyruvate carboxylase [Ochrobactrum anthropi ATCC 49188]
          Length = 1169

 Score = 80.2 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 31/199 (15%), Positives = 68/199 (34%), Gaps = 15/199 (7%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIK 131
            I +            +K+ ++ +    GVPV P+       ++        I  P ++K
Sbjct: 124 GIIFIGPKPETMRRLGNKVAARNLAIEIGVPVVPATDPLPDDIEEVKKLAAEIGYPLMLK 183

Query: 132 PLKGGSSLGIIVIKKDQSIP----LDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDAS 186
              GG   G+  I+ +  +         ++ +    D++ +E+ ++    +   ++GD  
Sbjct: 184 ASWGGGGRGMRAIRAEADLAREVTEAKREAKAAFGKDEVYLEKLIERARHVEVQILGDTH 243

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISR 245
            +   +            K          PA  +     +E+         A    G   
Sbjct: 244 GNAVHLFERDCSIQRRNQK-----VVERAPAPYLDDAQRQELAGYGLKIAHATDYIGAGT 298

Query: 246 SDFLFDPLSRKVFWLEINV 264
            +FL D  S K +++E+N 
Sbjct: 299 VEFLMDADSGKFYFIEVNP 317


>gi|150005296|ref|YP_001300040.1| phosphoribosylglycinamide formyltransferase 2 [Bacteroides vulgatus
           ATCC 8482]
 gi|294777133|ref|ZP_06742590.1| phosphoribosylglycinamide formyltransferase 2 [Bacteroides vulgatus
           PC510]
 gi|172048830|sp|A6L404|PURT_BACV8 RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|149933720|gb|ABR40418.1| phosphoribosylglycinamide formyltransferase 2 [Bacteroides vulgatus
           ATCC 8482]
 gi|294449002|gb|EFG17545.1| phosphoribosylglycinamide formyltransferase 2 [Bacteroides vulgatus
           PC510]
          Length = 389

 Score = 80.2 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 51/255 (20%), Positives = 88/255 (34%), Gaps = 36/255 (14%)

Query: 31  FKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
           F+V  +    ++  V+A  KPD+    +     E         L  +      ++ SA +
Sbjct: 46  FEVFSMLDGDALDAVVAKHKPDIIVPEIEAIRTE--------RLYHLEQEGIQVVPSARA 97

Query: 91  MD-----KMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYVIKPLKGGSSLGIIV 143
           ++     K          G+               ++   I  P V+KPL   S  G  +
Sbjct: 98  VNFTMNRKAIRDLAAKELGLKTAKYFYAKSLEELQEAAKEIGFPCVVKPLMSSSGKGQSL 157

Query: 144 IKKDQSIPLDLLQSSSWNHGD--QLLIEQYVDGIE----LTCGVMGDASLDVTEIA-VPK 196
           +K    +          + GD  +L+IE+++        LT       +L    I  V K
Sbjct: 158 VKSADELEQAWHYGCEGSRGDIKELIIEEFIQFDSEITLLTVTQKNGPTLFCPPIGHVQK 217

Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256
              Y               PA I  +  KE QR+A     A+   GI   +F     +  
Sbjct: 218 GGDY----------RESFQPAHIDPEHLKEAQRMADKVTAALTGAGIWGVEFFLSHENG- 266

Query: 257 VFWLEINVQP---GM 268
           V++ E++ +P   GM
Sbjct: 267 VYFSELSPRPHDTGM 281


>gi|149925596|ref|ZP_01913860.1| probable acyl-coa carboxylase alpha chain protein [Limnobacter sp.
           MED105]
 gi|149825713|gb|EDM84921.1| probable acyl-coa carboxylase alpha chain protein [Limnobacter sp.
           MED105]
          Length = 683

 Score = 80.2 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 73/221 (33%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+           I +   G+ A  +   K  +K  V   GVP+ P    
Sbjct: 77  AIHPGYGFLSENAAFAQACADANITFIGPGVEAIRIMGSKSEAKACVQPAGVPLIPGYFG 136

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGD 164
              +++        I  P +IK + GG   GI ++     +   L        +++    
Sbjct: 137 ADQSLNTLQAEAERIGFPLMIKAVAGGGGKGIRIVNSAAELQAALESCQREAKNAFGDAT 196

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDI 223
            +L +Q +    +   V  D   +V               +          PA  +    
Sbjct: 197 VMLEKQIIQPRHVEVQVFADTHGNVV-----HLFERDCSAQRRHQKVIEEAPAFGLTEQQ 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +   R A    +A+   G    +FL D    + +++E+N 
Sbjct: 252 REAFGRTAVQVAKAVNYVGAGTVEFLLDAR-GEFYFMEMNT 291


>gi|218442117|ref|YP_002380446.1| carbamoyl phosphate synthase large subunit [Cyanothece sp. PCC
           7424]
 gi|218174845|gb|ACK73578.1| carbamoyl-phosphate synthase, large subunit [Cyanothece sp. PCC
           7424]
          Length = 1082

 Score = 80.2 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 57/279 (20%), Positives = 109/279 (39%), Gaps = 36/279 (12%)

Query: 18  SGKACASALEDAGFKVSQID------------VDRS---------VGLVLAHLKPDLAFN 56
           SG     AL + G++V  I+             DR+         V  V+A  +PD    
Sbjct: 29  SGTQACKALREEGYEVVLINSNPASIMTDPEMADRTYIEPLTPEMVEKVIAKERPDAILP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  V       L+   +    + + A  ++ D++  K  ++  GVPVCPS +
Sbjct: 89  TMGGQTALNLAVSLAKNGALDRYNVELIGAKLPAIEMAEDRLLFKDAMARIGVPVCPSGI 148

Query: 113 ---VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
              +++    +  + S P +I+P       G  +    +   +        +   Q+L+E
Sbjct: 149 ASNLDQAKAIALEIGSYPLIIRPAFTLGGTGGGIAYNQEEFEVMAQYGLDCSPVSQILVE 208

Query: 170 QYVDG-IELTCGVMGDASLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPAK-IPLDIYKE 226
           + + G  E    VM D + +V  I   ++ D           +S  V PA+ +    Y+ 
Sbjct: 209 KSLLGWKEYELEVMRDLADNVVIICSIENIDPMGVHT----GDSITVAPAQTLTDKEYQR 264

Query: 227 VQRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           ++  +    + IG   G S   F  +P+  +V  +E+N 
Sbjct: 265 LRDYSKAIIREIGVETGGSNIQFSVNPVDGEVIVIEMNP 303



 Score = 57.8 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/271 (14%), Positives = 93/271 (34%), Gaps = 36/271 (13%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLV------- 68
           AL D GF+   +         D D S  L    L  +   N++     E G++       
Sbjct: 587 ALSDEGFETIMVNSNPETVSTDYDTSDRLYFEPLTKEDVLNIIEQENPE-GVIIQFGGQT 645

Query: 69  --------QAILELLEIPYT----HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116
                   Q  LE    P       +   +  ++ D+ R ++++S   +   P+ +   F
Sbjct: 646 PLKLAVPLQKYLESPNCPVQTKIWGTSPDSIDIAEDRERFEKILSQLKITQPPNGIARSF 705

Query: 117 T--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD- 173
              +     I  P V++P        + ++  DQ +   +  +        +LI+++++ 
Sbjct: 706 DESLIIARRIGYPVVVRPSYVLGGRAMEIVFSDQDLERYMTYAVQVEPDHPILIDKFLEN 765

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
            IE+    + D S       +   +       +S  ++  +  + +   +   ++     
Sbjct: 766 AIEVDVDTLADTSGKSIIGGI--MEHIEEAGVHSGDSACSIPYSSLTPAVLDTIRTWTSQ 823

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
               +   G+   +  +     +V+ LE N 
Sbjct: 824 LANVLKVVGL--MNIQYAVQGEQVYILEANP 852


>gi|163733458|ref|ZP_02140901.1| propionyl-CoA carboxylase, alpha subunit [Roseobacter litoralis Och
           149]
 gi|161393246|gb|EDQ17572.1| propionyl-CoA carboxylase, alpha subunit [Roseobacter litoralis Och
           149]
          Length = 681

 Score = 80.2 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 75/221 (33%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      LE   + +    + A     DK+ SK++    GV   P  + 
Sbjct: 77  AVHPGYGFLSENAKFAQALEAAGVAFVGPPVGAIEKMGDKITSKKIAQEAGVSTVPGYMG 136

Query: 114 NRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGD 164
                +      + +  P +IK   GG   G+ +   D              ++S+   D
Sbjct: 137 LIEDAEDAVKISNQVGYPVMIKASAGGGGKGMRIAWNDDEAREGFQSSKNEAANSFG-DD 195

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           ++ IE++V     +   V+ D   +   +   +        K             +    
Sbjct: 196 RIFIEKFVTQPRHIEIQVLCDTHGNGIYLGERECSIQRRNQK----VVEEAPSPFLDEAT 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            K +   A    QA+G       +F+ D   +  ++LE+N 
Sbjct: 252 RKAMGEQAVALAQAVGYASAGTVEFIVDG-DKNFYFLEMNT 291


>gi|120437667|ref|YP_863353.1| biotin carboxylase [Gramella forsetii KT0803]
 gi|117579817|emb|CAL68286.1| biotin carboxylase [Gramella forsetii KT0803]
          Length = 451

 Score = 80.2 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 81/220 (36%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     I E  EI +  +     A   DK  +K  + + GVP  P    
Sbjct: 77  AIHPGYGFLSENAKFSKICEEHEIKFIGASPDMIAKMGDKATAKATMRAAGVPCVPGSEG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
            I   +        +  P ++K   GG   G+  + K++ +         ++ +    D 
Sbjct: 137 IIKDFKECQKLAKEVGYPVMLKATAGGGGKGMRAVWKEEELEPAWESARKEADASFGNDG 196

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+ ++    +   ++GD+S     ++           K     +       +   + 
Sbjct: 197 MYMEKLIEEPRHIEIQIVGDSSGKACHLSERDCSVQRRHQK----LTEETPSPFMTDTLR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K++   A  A + I   G    +FL D   R  +++E+N 
Sbjct: 253 KKMGDAAVKAAEYIKYEGAGTVEFLVDKH-RNFYFMEMNT 291


>gi|325520549|gb|EGC99631.1| biotin carboxylation region [Burkholderia sp. TJI49]
          Length = 558

 Score = 80.2 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 29/215 (13%), Positives = 68/215 (31%), Gaps = 14/215 (6%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF-- 116
           +G   E        E   + +             K  ++ + ++ GV + P   +     
Sbjct: 83  YGFLSEHAGFADACEAAGLRFIGPRGDQMRAFGLKHTARALAAAQGVALLPGTGLLDDVE 142

Query: 117 -TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIEQ 170
             +     I  P ++K   GG  +G+ + +    +              + H   + +E+
Sbjct: 143 TALAEAAAIGYPVMLKSTAGGGGIGMSLCRDAAQLEAAFESVVRLGNANFAHAG-VYLEK 201

Query: 171 YVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           +V+    +   + GD   +   +            K             +       +  
Sbjct: 202 FVEHARHIEVQIFGDGRGNAIALGERDCSVQRRNQK----VIEETPAPDLTDAERGALHA 257

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            A    +A+G       +F+FD  +R+ ++LE+N 
Sbjct: 258 SAVRLARAVGYASAGTVEFVFDASTRQFYFLEVNT 292


>gi|315500615|ref|YP_004089417.1| urea carboxylase [Asticcacaulis excentricus CB 48]
 gi|315418627|gb|ADU15266.1| urea carboxylase [Asticcacaulis excentricus CB 48]
          Length = 1202

 Score = 80.2 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 43/257 (16%), Positives = 83/257 (32%), Gaps = 32/257 (12%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+ +     E   I +             K  ++ +  + GVP+ P    
Sbjct: 81  AIHPGYGFLSENAVFAERCEAEGIVFIGPTPDNIRAFGLKHTARDMAQALGVPLAPGTDL 140

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQL 166
           +      + +   I  P ++K   GG  +G+ V   +  I       +           +
Sbjct: 141 LTDEDAAISAADTIGYPVILKATAGGGGIGMKVCYSEVDIREGFATVARLGAGNFGDGGV 200

Query: 167 LIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIY 224
            +E+YV     +   V GD    V  +           L+  +       PA  +P    
Sbjct: 201 FLERYVAIARHIEVQVFGDGQGHVMALGE-----RDCSLQRRNQKVVEETPAPHLPDATR 255

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
           + +   A         R     +FL+D      F+LE+N             +    G +
Sbjct: 256 QALMDAAVRLACGANYRSAGTVEFLYDADRDDFFFLEVNT-----------RLQVEHGVT 304

Query: 285 FR----ELLLWMVEDAS 297
            +    +L+ WM+  A+
Sbjct: 305 EQVTGVDLVEWMIRGAA 321


>gi|150014921|ref|YP_001307175.1| carbamoyl phosphate synthase large subunit [Clostridium
           beijerinckii NCIMB 8052]
 gi|189081827|sp|A6LPD9|CARB_CLOB8 RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|149901386|gb|ABR32219.1| carbamoyl-phosphate synthase, large subunit [Clostridium
           beijerinckii NCIMB 8052]
          Length = 1069

 Score = 80.2 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 44/289 (15%), Positives = 102/289 (35%), Gaps = 32/289 (11%)

Query: 22  CASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLV---- 68
           C  AL+  G +   +         D D S  L    L  +   N++      DG++    
Sbjct: 580 CVKALKKLGIETIIVNNNPETVSTDFDVSDKLYFEPLTEEDVLNIIE-KEKPDGVILQFG 638

Query: 69  -------QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV--PVCPSILVNRFTMD 119
                     L+   I    +      ++ D+ +  +++   G+  P    I      ++
Sbjct: 639 GQTAIKLANFLKEQNIVTLGTTADQIDMAEDREKFDELLERLGISRPKGKGIWSLEEGLE 698

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
               +  P +++P       G+ +   ++ +   L  + + +  + +LI++Y+ G E+  
Sbjct: 699 EAKRLKFPVLVRPSYVIGGQGMEITHDEEELTYYLENAFAKDSKNPILIDKYLMGREIEV 758

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
             + D    +    +   +       +S  + T      I   I  +V         AIG
Sbjct: 759 DAISDGENILIPGIMEHLERAGV---HSGDSVTMYPSQNISDKIKADVLEYTKKLALAIG 815

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
            +G+    F+      +++ +E+N +   T     P ++  +G    +L
Sbjct: 816 IKGMINIQFI--EFEGELYVIEVNPRASRT----VPYISKVSGVPIVDL 858



 Score = 65.5 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 61/318 (19%), Positives = 118/318 (37%), Gaps = 45/318 (14%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQID-------VDRSVGL--------------V 45
           G ++E + S   G     AL+  G +V  ++        D+ V                V
Sbjct: 21  GQAAEFDYS---GTQACEALKSEGIEVVLVNSNPATIMTDKEVADKVYLEPLTLEFVEKV 77

Query: 46  LAHLKPDLAFNVLHGNFGEDG-------LVQAILELLEIPYTHSGILASALSMDKMRSKQ 98
           +A  +PD   ++L G  G+ G           ILE   +    + I +     D+   + 
Sbjct: 78  IAKERPD---SLLAGMGGQTGLNLAVELHDSGILEKYNVKVIGTSIASIKEGEDRELFRD 134

Query: 99  VVSSCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
           +++  G PV  S +V   T  ++  + I  P +++P       G  +   ++ +   L  
Sbjct: 135 MMNRIGEPVIKSEIVTDLTAGLEFANKIGYPVIVRPAYTLGGSGGGIADDEEQLRTILES 194

Query: 157 SSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215
               +   Q+L+E+ V G  E+   VM D            +      +   + +S  V 
Sbjct: 195 GLQLSTIGQVLLEKSVKGWKEVEYEVMRD---SYGNCITVCNMENIDPVGIHTGDSIVVA 251

Query: 216 PAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274
           P++ +    Y+ ++  +     A+G  G     F  +P S +   +EIN  P ++  S  
Sbjct: 252 PSQTLSDKEYQMLRTASINIINAVGIEGGCNVQFSLNPNSFEYAVIEIN--PRVSRSS-- 307

Query: 275 PEMAAYAGYSFRELLLWM 292
              +   GY   +L   +
Sbjct: 308 ALASKATGYPIAKLAAKI 325


>gi|297845912|ref|XP_002890837.1| hypothetical protein ARALYDRAFT_473200 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297336679|gb|EFH67096.1| hypothetical protein ARALYDRAFT_473200 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1183

 Score = 80.2 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 52/280 (18%), Positives = 102/280 (36%), Gaps = 38/280 (13%)

Query: 18  SGKACASALEDAGFKVSQI---------DVDRS------------VGLVLAHLKPDLAFN 56
           SG     AL + G++V  I         D + +            V  V+   +PD    
Sbjct: 116 SGTQACKALREEGYEVILINSNPATIMTDPETANRTYIAPMTPELVEQVIEKERPDALLP 175

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G    +  V       LE   +    + + A   + D+   K+ + + G+   PS  
Sbjct: 176 TMGGQTALNLAVALAESGALEKYGVELIGAKLGAIKKAEDRELFKEAMKNIGLKTPPSGI 235

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
              ++     ++ +   P +I+P       G  +    +          + +   Q+L+E
Sbjct: 236 GNTLDECFDIAERIGEFPLIIRPAFTLGGTGGGIAYNKEEFESICKAGLAASVTSQVLVE 295

Query: 170 QYVDG-IELTCGVMGDASLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPAK-IPLDIYKE 226
           + + G  E    VM D + +V  I   ++ D           +S  V PA+ +    Y+ 
Sbjct: 296 KSLLGWKEYELEVMRDLADNVVIICSIENIDPMGVHT----GDSITVAPAQTLTDREYQR 351

Query: 227 VQRLAFLAHQAIG--CRGISRSDFLFDPLSRKVFWLEINV 264
           ++  +    + IG  C G S   F  +P+  +V  +E+N 
Sbjct: 352 LRDYSIAIIREIGVECGG-SNVQFAVNPVDGEVMIIEMNP 390



 Score = 47.4 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/187 (12%), Positives = 65/187 (34%), Gaps = 6/187 (3%)

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTMDSQHLISPPYVIKPLKGGSS 138
            +   +   + D+ R   ++    +      +       +     +  P V++P      
Sbjct: 762 GTSPDSIDAAEDRERFNAILDELKIEQPKGGIAKSEADALAIAKEVGYPVVVRPSYVLGG 821

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKS 197
             + ++  D  +   L  +   +    +L+++Y+ D IE+    + D+  +V    + + 
Sbjct: 822 RAMEIVYDDSRLITYLENAVEVDPERPVLVDKYLSDAIEIDVDTLTDSYGNVVIGGIMEH 881

Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
              +    +S  ++  +    IP    + +++      + +   G+    +        V
Sbjct: 882 IEQAGV--HSGDSACMLPTQTIPSSCLQTIRQWTTKLAKKLNVCGLMNCQYAITTS-GDV 938

Query: 258 FWLEINV 264
           F LE N 
Sbjct: 939 FLLEANP 945


>gi|253733143|ref|ZP_04867308.1| acetyl-CoA carboxylase [Staphylococcus aureus subsp. aureus TCH130]
 gi|253728899|gb|EES97628.1| acetyl-CoA carboxylase [Staphylococcus aureus subsp. aureus TCH130]
          Length = 453

 Score = 80.2 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 41/220 (18%), Positives = 79/220 (35%), Gaps = 18/220 (8%)

Query: 56  NVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
           N +H  +G   E       +E   I +         +  DK+ ++Q V   GVPV P   
Sbjct: 75  NAIHPGYGFLSESTKFAQTVEEQGIAFIGPTKKTMEIMGDKITARQTVHHAGVPVIPGSN 134

Query: 111 --ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS----WNHGD 164
             +            I  P VIK   GG   GI ++KK + +     ++ S    +   D
Sbjct: 135 GAVNHVSEIEKLAKDIGYPVVIKAASGGGGKGIRIVKKAEDLEKAFKEAKSEGKKYFDDD 194

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           ++ +E ++     +   VMGD   +   +            + +         A +  + 
Sbjct: 195 RVYVEAFIPVAKHVEVQVMGDGQDNYVHLGERDCSV----QRKNQKLIEESPCAALTEER 250

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            +++   A    +A   R     +FL    +   +++E+N
Sbjct: 251 RQQICNDAVKVARAANYRSAGTIEFLVTDTAH--YFIEMN 288


>gi|237710889|ref|ZP_04541370.1| phosphoribosylglycinamide formyltransferase 2 [Bacteroides sp.
           9_1_42FAA]
 gi|237727199|ref|ZP_04557680.1| phosphoribosylglycinamide formyltransferase 2 [Bacteroides sp. D4]
 gi|229434055|gb|EEO44132.1| phosphoribosylglycinamide formyltransferase 2 [Bacteroides dorei
           5_1_36/D4]
 gi|229454733|gb|EEO60454.1| phosphoribosylglycinamide formyltransferase 2 [Bacteroides sp.
           9_1_42FAA]
          Length = 389

 Score = 80.2 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 51/255 (20%), Positives = 88/255 (34%), Gaps = 36/255 (14%)

Query: 31  FKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
           F+V  +    ++  V+A  KPD+    +     E         L  +      ++ SA +
Sbjct: 46  FEVFSMLDGDALDAVVAKHKPDIIVPEIEAIRTE--------RLYHLEQEGIQVVPSARA 97

Query: 91  MD-----KMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYVIKPLKGGSSLGIIV 143
           ++     K          G+               ++   I  P V+KPL   S  G  +
Sbjct: 98  VNFTMNRKAIRDLAAKELGLKTAKYFYAKSLEELKEAAKEIGFPCVVKPLMSSSGKGQSL 157

Query: 144 IKKDQSIPLDLLQSSSWNHGD--QLLIEQYVDGIE----LTCGVMGDASLDVTEIA-VPK 196
           +K    +          + GD  +L+IE+++        LT       +L    I  V K
Sbjct: 158 VKSADELEQAWHYGCEGSRGDIKELIIEEFIQFDSEITLLTVTQKNGPTLFCPPIGHVQK 217

Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256
              Y               PA I  +  KE QR+A     A+   GI   +F     +  
Sbjct: 218 GGDY----------RESFQPAHIDPEHLKEAQRMADKVTAALTGAGIWGVEFFLSHENG- 266

Query: 257 VFWLEINVQP---GM 268
           V++ E++ +P   GM
Sbjct: 267 VYFSELSPRPHDTGM 281


>gi|223984195|ref|ZP_03634343.1| hypothetical protein HOLDEFILI_01636 [Holdemania filiformis DSM
           12042]
 gi|223963810|gb|EEF68174.1| hypothetical protein HOLDEFILI_01636 [Holdemania filiformis DSM
           12042]
          Length = 729

 Score = 80.2 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 84/221 (38%), Gaps = 18/221 (8%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQHLISPPYV 129
           L  L +P   +G  A   + ++   ++VV+ CG+P      V      +   + I  P +
Sbjct: 312 LNKLNVPIIGTGTEAIDKAENRDLFEKVVTECGIPQPLGQAVTNIEDGLKVANRIGYPVL 371

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS--- 186
           ++P        + ++ +D+ +   L  +   +    +L+++Y+ G E+    + D     
Sbjct: 372 VRPSYVLGGRAMQIVHQDEELIEYLTSAVKIDQDQPVLVDKYIHGCEVEVDAICDGKDVF 431

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISR 245
           +      V  +  +S        +S  V P   +   +   +Q        AIG  G+  
Sbjct: 432 IPGIMQLVEATGVHS-------GDSMSVYPPYSLSDKVKATIQEYTVKLGLAIGIEGLFN 484

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
             F+ D    +V  +E+N +   +  S  P ++   G    
Sbjct: 485 IQFIVDEND-EVSVIEVNPR---SSRS-VPFLSKATGVPMA 520


>gi|199598184|ref|ZP_03211606.1| pyruvate carboxylase [Lactobacillus rhamnosus HN001]
 gi|258508324|ref|YP_003171075.1| pyruvate carboxylase [Lactobacillus rhamnosus GG]
 gi|199590945|gb|EDY99029.1| pyruvate carboxylase [Lactobacillus rhamnosus HN001]
 gi|257148251|emb|CAR87224.1| Pyruvate carboxylase [Lactobacillus rhamnosus GG]
 gi|259649640|dbj|BAI41802.1| pyruvate carboxylase [Lactobacillus rhamnosus GG]
          Length = 1145

 Score = 80.2 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 33/245 (13%), Positives = 83/245 (33%), Gaps = 25/245 (10%)

Query: 33  VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASAL 89
            + +D+D  +  +      D     +H  +G   E+      +    + +         +
Sbjct: 58  AAYLDMD-DIIRIAKQSGAD----TIHPGYGLLSENATFARKVRAAGLTFVGPRSELLDV 112

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFT----MDSQHLISPPYVIKPLKGGSSLGIIVIK 145
             DK+ +K+     G+   P             D       P ++K   GG   G+ ++ 
Sbjct: 113 FGDKVAAKEAAHKAGLTTIPGTPEPTRDFTEIQDFTAKHGFPVMLKAASGGGGKGMRIVH 172

Query: 146 KDQSIPL----DLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFY 200
            +  +       + ++ +    D++ +E+Y+     +   V+GD    +           
Sbjct: 173 SESELEAVYQNAVNEAKASFGDDRMYVEKYIASAKHVEVQVLGDEHGHLL-----HLFER 227

Query: 201 SYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
              ++        + PA  +PL +   + + A     ++        +FL D    + ++
Sbjct: 228 DCSVQRRQQKVVEIAPAVALPLALRNRICQSAVDLMASLHYENAGTVEFLVD--GDQYYF 285

Query: 260 LEINV 264
           +E+N 
Sbjct: 286 IEVNP 290


>gi|33592052|ref|NP_879696.1| biotin carboxylase [Bordetella pertussis Tohama I]
 gi|33571696|emb|CAE41191.1| biotin carboxylase [Bordetella pertussis Tohama I]
 gi|332381468|gb|AEE66315.1| biotin carboxylase [Bordetella pertussis CS]
          Length = 456

 Score = 80.2 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 42/223 (18%), Positives = 85/223 (38%), Gaps = 23/223 (10%)

Query: 57  VLHGNFG-----EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
            +H  +G     ED   QA ++   I +      A  +  DK +++++    GVP+ P  
Sbjct: 78  AIHPGYGFLSENED-FAQACID-AGIVFIGPDPGAIRMMGDKAQARKIAKEAGVPIVPGS 135

Query: 112 LVNRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS-----SWNH 162
                 ++        +  P ++K   GG   G+ VI+ +  +   L ++S     ++  
Sbjct: 136 PEPVSDVEEAIRVAREVGYPLLVKAAAGGGGRGMRVIQGEAQLREGLERASMEAKSAFG- 194

Query: 163 GDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL 221
              + IE+Y+     +   V GD   DV  +   +        K             +  
Sbjct: 195 DGSVYIERYISPVRHVEIQVFGDGE-DVIHLGERECSIQRRHQKLL----EESPSPVLSD 249

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +  + +   A    +A+  RG    +F+ D  S + F++E+N 
Sbjct: 250 ETRQRMGEAACALARAVKYRGAGTLEFVMDGKSGEFFFIEMNT 292


>gi|327398863|ref|YP_004339732.1| acetyl-CoA carboxylase, biotin carboxylase [Hippea maritima DSM
           10411]
 gi|327181492|gb|AEA33673.1| acetyl-CoA carboxylase, biotin carboxylase [Hippea maritima DSM
           10411]
          Length = 447

 Score = 80.2 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 35/233 (15%), Positives = 83/233 (35%), Gaps = 16/233 (6%)

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           ++   + + K D      +G   E+     +   L + +            DK   K ++
Sbjct: 65  NMAQAIVNSKCDAVHPG-YGFLSENPAFVRVCNDLGVTFIGPDAETMERLADKSIVKSIL 123

Query: 101 SSCGVPVCP----SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP----L 152
              G+P  P    SI      +++   I  P ++K   GG   G+ V++  + +      
Sbjct: 124 EDNGIPTIPGSRGSIKDEETLIETAEKIGYPVLLKAAWGGGGKGMRVVRSKEELIGAYSA 183

Query: 153 DLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
             +++ +    + + +E++++    +   ++ D   +V  +            K      
Sbjct: 184 AKMEARASFGKEDIYLEKFIEHPRHIEVQILADEYGNVVHVGERDCTLQRRHQKLL---- 239

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
                  +  +I K +   A  A + +  +     +FLFD      +++EIN 
Sbjct: 240 EEAPSVVLKEEIRKNLLSTAVEAARVLNYKNAGTLEFLFD--GENFYFIEINT 290


>gi|257468961|ref|ZP_05633055.1| acetyl-CoA carboxylase, biotin carboxylase [Fusobacterium ulcerans
           ATCC 49185]
 gi|317063209|ref|ZP_07927694.1| acetyl-CoA carboxylase [Fusobacterium ulcerans ATCC 49185]
 gi|313688885|gb|EFS25720.1| acetyl-CoA carboxylase [Fusobacterium ulcerans ATCC 49185]
          Length = 450

 Score = 80.2 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 82/220 (37%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+     I E+  + +            DK  ++      GVP+     +
Sbjct: 77  AIHPGYGFLSENARFGKICEMHNLTFIGPRPECIIKMGDKATARATAIENGVPITNGTGI 136

Query: 114 NRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
            +   +++      I+ P +IK   GG   G+ + + D+ +  +++    ++ S      
Sbjct: 137 IKSIAEAKKEVNERITYPVMIKATAGGGGKGMRIARNDEELAANIVAAQNEAESAFGNPD 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE++V D   +   +MGD   +V  +            K             +P +I 
Sbjct: 197 VYIEKFVEDPRHIEIQIMGDKHGNVIYLGERDCSIQRRHQK----LIEEAPSFSLPYNIR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K +   A    +AI        +FL D  +   F++E+N 
Sbjct: 253 KAMGEAAVTLAKAINYDSAGTLEFLVDK-NNDFFFMEMNT 291


>gi|261821937|ref|YP_003260043.1| urea carboxylase [Pectobacterium wasabiae WPP163]
 gi|261605950|gb|ACX88436.1| urea carboxylase [Pectobacterium wasabiae WPP163]
          Length = 1200

 Score = 80.2 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 36/234 (15%), Positives = 78/234 (33%), Gaps = 27/234 (11%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFTMDSQHLISPPYVIKP 132
           +I +         +   K  ++ +     VP+     +   +   + +   I  P ++K 
Sbjct: 99  QIAFVGPTPQQLRVFGLKHTARALAKKHNVPLLEGTELLENSNAALRAAAEIGYPVMLKS 158

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQLLIEQYVD-GIELTCGVMGDASL 187
             GG  +G+ V      +                   + IE+Y++    L   + GD   
Sbjct: 159 TAGGGGIGMRVCYSATELSEVFDTVKRLGQNNFSDAGVFIEKYIERARHLEVQIFGDGQG 218

Query: 188 DVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           +V  + V          K             +P  +   +   A    QA+  R     +
Sbjct: 219 EVLALGVRDCSVQRRNQK----VIEETPAPNLPNGVADALCSAAISLAQAVDYRSAGTVE 274

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR----ELLLWMVEDAS 297
           F++D  + + ++LE+N             +    G + +    +L+ WM+E A+
Sbjct: 275 FVYDSATDRFYFLEVNT-----------RLQVEHGVTEQVWGVDLVRWMIELAA 317


>gi|212694840|ref|ZP_03302968.1| hypothetical protein BACDOR_04374 [Bacteroides dorei DSM 17855]
 gi|319643489|ref|ZP_07998112.1| phosphoribosylglycinamide formyltransferase 2 [Bacteroides sp.
           3_1_40A]
 gi|212662593|gb|EEB23167.1| hypothetical protein BACDOR_04374 [Bacteroides dorei DSM 17855]
 gi|317384894|gb|EFV65850.1| phosphoribosylglycinamide formyltransferase 2 [Bacteroides sp.
           3_1_40A]
          Length = 389

 Score = 80.2 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 51/255 (20%), Positives = 88/255 (34%), Gaps = 36/255 (14%)

Query: 31  FKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
           F+V  +    ++  V+A  KPD+    +     E         L  +      ++ SA +
Sbjct: 46  FEVFSMLDGDALDAVVAKHKPDIIVPEIEAIRTE--------RLYHLEQEGIQVVPSARA 97

Query: 91  MD-----KMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYVIKPLKGGSSLGIIV 143
           ++     K          G+               ++   I  P V+KPL   S  G  +
Sbjct: 98  VNFTMNRKAIRDLAAKELGLKTAKYFYAKSLEELREAAREIGFPCVVKPLMSSSGKGQSL 157

Query: 144 IKKDQSIPLDLLQSSSWNHGD--QLLIEQYVDGIE----LTCGVMGDASLDVTEIA-VPK 196
           +K    +          + GD  +L+IE+++        LT       +L    I  V K
Sbjct: 158 VKSADELEQAWHYGCEGSRGDIKELIIEEFIQFDSEITLLTVTQKNGPTLFCPPIGHVQK 217

Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256
              Y               PA I  +  KE QR+A     A+   GI   +F     +  
Sbjct: 218 GGDY----------RESFQPAHIDPEHLKEAQRMADKVTAALTGAGIWGVEFFLSHENG- 266

Query: 257 VFWLEINVQP---GM 268
           V++ E++ +P   GM
Sbjct: 267 VYFSELSPRPHDTGM 281


>gi|296108310|ref|YP_003620011.1| acetyl-CoA carboxylase [Legionella pneumophila 2300/99 Alcoy]
 gi|295650212|gb|ADG26059.1| acetyl-CoA carboxylase [Legionella pneumophila 2300/99 Alcoy]
          Length = 471

 Score = 80.2 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 35/228 (15%), Positives = 74/228 (32%), Gaps = 22/228 (9%)

Query: 47  AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP 106
             + P   F   +  F ED           I +        A    K+ +++ +   GVP
Sbjct: 75  EAIHPGYGFLSENAEFAED------CNKAGIVFIGPSAPVMATMGSKIAAREAMIKAGVP 128

Query: 107 VCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSS 158
             P    N  T+D        +  P ++K   GG   GI +      I         ++ 
Sbjct: 129 TIPGSKGNLETIDDALHCAETLGYPVMLKATFGGGGRGIRLCHDASQIKQQFARVQSEAE 188

Query: 159 SWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP- 216
                  + +E+Y+ +   +   ++ D    V  +            K        + P 
Sbjct: 189 KSFGDSHIYMEKYIANPRHIEVQILADHHGTVLHLFERDCSIQRRHQKL-----VEIAPS 243

Query: 217 AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            ++     + +   A  A + +G       +F+ D  + + +++E+N 
Sbjct: 244 PQLDEATRQVLLGYAVKAAKEVGYTNAGTVEFILDK-NNQPYFMEMNT 290


>gi|330808602|ref|YP_004353064.1| biotin carboxylase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327376710|gb|AEA68060.1| Putative biotin carboxylase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 649

 Score = 80.2 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 41/220 (18%), Positives = 78/220 (35%), Gaps = 19/220 (8%)

Query: 58  LHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
           +H  +G   E+      +E   + +      A      K  +K ++ + GVP+ P     
Sbjct: 82  IHPGYGFLSENAGFARAIESAGLIFLGPPASAIDAMGSKSAAKTLMETAGVPLVPGYHGE 141

Query: 115 RFTM----DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQL 166
              +    D+   I  P ++K   GG   G+ V++    +   L  +           ++
Sbjct: 142 AQDLETFRDAAEHIGYPVLLKATAGGGGKGMKVVEDVSQLAEALASAQREAQSSFGDSRM 201

Query: 167 LIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIY 224
           L+E+Y +    +   V  D   +   +            K          PA  +   + 
Sbjct: 202 LVEKYLLKPRHVEIQVFADQHGNCLYLNERDCSIQRRHQK-----VVEEAPAPGLTPQLR 256

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +   A  A QAIG  G    +FL D    + F++E+N 
Sbjct: 257 QAMGEAAVRAAQAIGYVGAGTVEFLLDAR-GEFFFMEMNT 295


>gi|281491274|ref|YP_003353254.1| acetyl-CoA carboxylase biotin carboxylase [Lactococcus lactis
           subsp. lactis KF147]
 gi|281375015|gb|ADA64533.1| Acetyl-CoA carboxylase, biotin carboxylase [Lactococcus lactis
           subsp. lactis KF147]
          Length = 455

 Score = 80.2 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 75/220 (34%), Gaps = 16/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  FG   E+     + E + I +         +  DK+ ++  +   GVPV P    
Sbjct: 77  AIHPGFGFLSENSKFARLCEEMNIKFIGPSAKVMDMMGDKINARAEMIKAGVPVTPGSEG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
            +      +     I  P ++K   GG   GI  +   + +      + +          
Sbjct: 137 EVHTTDEAVKIAEEIGYPIMLKASAGGGGKGIRKVNNVEELVPAFEAAQAEAQAAFGNGA 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+ +     +   ++GD+  +V  +            K             I   + 
Sbjct: 197 MFIERMIFPARHIEVQILGDSQGNVIHLGERDCSLQRNNQKVL----EESPSVAIGHTLR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +E+   A  A Q +        +FL D  S K +++E+N 
Sbjct: 253 QEITAAAVKAAQHVSYENAGTIEFLLDESSGKFYFMEMNT 292


>gi|301115336|ref|XP_002905397.1| methylcrotonoyl-CoA carboxylase subunit alpha, putative
           [Phytophthora infestans T30-4]
 gi|262110186|gb|EEY68238.1| methylcrotonoyl-CoA carboxylase subunit alpha, putative
           [Phytophthora infestans T30-4]
          Length = 682

 Score = 80.2 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 79/221 (35%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       +   + +    + A      K  SK ++   GVPV P    
Sbjct: 102 AVHPGYGFLSENAAFARACQEAGVEFIGPPVKAIEDMGSKSASKDIMIKAGVPVTPGYHG 161

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
              + +        I  P +IK + GG   G+ ++ +++     L              +
Sbjct: 162 ADQSFETLQKEAEKIGYPVLIKAVLGGGGKGMRIVDEEKDFQDALDACVREGQASFGDGR 221

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDI 223
           +LIE+Y+     +   + GD   +V              ++          PA  +   +
Sbjct: 222 VLIEKYLRKPRHVELQIFGDKHGNVI-----HLFERDCSVQRRHQKVLEEAPAPNMSEAL 276

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            K++   A  A +A+G  G    +FL D      +++E+N 
Sbjct: 277 RKKMGDAAVAAAKAVGYVGAGTVEFLLDE-DESFYFMEMNT 316


>gi|154275046|ref|XP_001538374.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
 gi|150414814|gb|EDN10176.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
          Length = 674

 Score = 80.2 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 36/203 (17%), Positives = 76/203 (37%), Gaps = 12/203 (5%)

Query: 69  QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM----DSQHLI 124
           Q + E   +     G    A + DK+++K +  +C VP+  ++      +         +
Sbjct: 98  QRMWEEAGVKVIGPGWEVLARTGDKLQAKMLAEACRVPILKAMRTPTSDIGLIRQFVAEV 157

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG--IELTCGVM 182
             P ++K + GG   GI  +K    +   + +++  +   ++ +E+   G    +   V+
Sbjct: 158 GYPVMVKAVDGGGGRGIRFVKGPDELQSAIDRATGESPSKKVFVEKAAVGGFHHIEVQVV 217

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCR 241
           GD + +V  +           ++          PA +    + K V   A      I   
Sbjct: 218 GDGTGEVRHLWE-----RDCSVQRRFQKIVECAPAMMKNRTLIKRVIESALRMASEIKYL 272

Query: 242 GISRSDFLFDPLSRKVFWLEINV 264
            +   +FL      K ++LEIN 
Sbjct: 273 SLGTFEFLASEKLSKFYFLEINP 295


>gi|148358601|ref|YP_001249808.1| acetyl-CoA carboxylase biotin carboxylase subunit [Legionella
           pneumophila str. Corby]
 gi|148280374|gb|ABQ54462.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Legionella
           pneumophila str. Corby]
          Length = 471

 Score = 80.2 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 35/228 (15%), Positives = 74/228 (32%), Gaps = 22/228 (9%)

Query: 47  AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP 106
             + P   F   +  F ED           I +        A    K+ +++ +   GVP
Sbjct: 75  EAIHPGYGFLSENAEFAED------CNKAGIVFIGPSAPVMATMGSKIAAREAMIKAGVP 128

Query: 107 VCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSS 158
             P    N  T+D        +  P ++K   GG   GI +      I         ++ 
Sbjct: 129 TIPGSKGNLETIDDALHCAETLGYPVMLKATFGGGGRGIRLCHDASQIKQQFARVQSEAE 188

Query: 159 SWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP- 216
                  + +E+Y+ +   +   ++ D    V  +            K        + P 
Sbjct: 189 KSFGDSHIYMEKYIANPRHIEVQILADHHGTVLHLFERDCSIQRRHQKL-----VEIAPS 243

Query: 217 AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            ++     + +   A  A + +G       +F+ D  + + +++E+N 
Sbjct: 244 PQLDEATRQVLLGYAVKAAKEVGYTNAGTVEFILDK-NNQPYFMEMNT 290


>gi|332716371|ref|YP_004443837.1| propionyl-coenzyme A carboxylase, alpha polypeptide [Agrobacterium
           sp. H13-3]
 gi|325063056|gb|ADY66746.1| propionyl-coenzyme A carboxylase, alpha polypeptide [Agrobacterium
           sp. H13-3]
          Length = 667

 Score = 80.2 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 44/240 (18%), Positives = 83/240 (34%), Gaps = 16/240 (6%)

Query: 34  SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDK 93
           S I +D+ +   + +   D      +G   E+      LE   + +    + A     DK
Sbjct: 59  SYIVIDK-ILAAIENTGADAVHPG-YGFLSENAAFAEALEKAGVIFIGPPVGAIQAMGDK 116

Query: 94  MRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQS 149
           + SK++ +  GV   P  +      D        I  P +IK   GG   G+ +   D  
Sbjct: 117 ITSKKLAAEAGVSTVPGHMGLIGDADEAVRIASEIGYPVMIKASAGGGGKGMRIAFNDAE 176

Query: 150 IPLDLL----QSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYEL 204
                     ++ S    D++ IE++V     +   V+GD   ++  +   +        
Sbjct: 177 AREGFQSSKNEAKSSFGDDRIFIEKFVTQPRHIEIQVLGDQHGNILYLGERECSIQRRNQ 236

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K             +     K +   A    +A+G       +F+ D   R  ++LE+N 
Sbjct: 237 K----VIEEAPSPFLDEATRKAMGEQAVALSRAVGYHSAGTVEFIVDG-ERNFYFLEMNT 291


>gi|209885107|ref|YP_002288964.1| acetyl-CoA carboxylase [Oligotropha carboxidovorans OM5]
 gi|209873303|gb|ACI93099.1| acetyl-CoA carboxylase [Oligotropha carboxidovorans OM5]
          Length = 451

 Score = 80.2 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 74/220 (33%), Gaps = 18/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---- 109
            +H  +G   E+     IL    + +            DK+ +K+     G+PV P    
Sbjct: 77  AVHPGYGFLSENARFAEILTEHGVDFIGPKAEHIRTMGDKIEAKKTAKRLGIPVVPGSDG 136

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
           S+  N   M     I  P ++K   GG   G+ V   +  + + L     ++ +      
Sbjct: 137 SVTPNDEAMAIAKKIGFPVLVKAAAGGGGRGMKVAHTEADLMMALTTASNEAKAAFGDGS 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+Y+     +   ++GD       +            K             I     
Sbjct: 197 VYLEKYLAKPRHIEIQILGDGRGGAIHLGERDCSLQRRHQK----VWEESPSPIISKQAR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +  +   A + +   G+   +FL+     + +++E+N 
Sbjct: 253 ARIGEICAKAMREMKYVGVGTIEFLY--EDGEFYFIEMNT 290


>gi|20089560|ref|NP_615635.1| pyruvate carboxylase subunit A [Methanosarcina acetivorans C2A]
 gi|19914474|gb|AAM04115.1| pyruvate carboxylase subunit A [Methanosarcina acetivorans C2A]
          Length = 493

 Score = 80.2 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 41/221 (18%), Positives = 83/221 (37%), Gaps = 20/221 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+       E   I +        A    K+R++ ++   GVPV P    
Sbjct: 77  AIHPGYGFLSENPAFAKRCEEEGIIFIGPPSHVIAEMGSKIRARNLMMKAGVPVVPGTKD 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGD 164
            +      ++    I  P +IK   GG  +G+ V+   + +   L     +  S++    
Sbjct: 137 AVEDVNEALEIAEKIGYPVLIKASAGGGGIGMKVVHSIEELSTSLSSTQQMAGSAFG-DS 195

Query: 165 QLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            + IE+YV+    +   ++ DAS +   ++  +        K             +  ++
Sbjct: 196 SVFIEKYVEEPRHIEIQILADASGNTVYLSDRECSIQRRHQK----LIEEAPSPIMTPEL 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            K++   A    +AIG       +FL+       ++LE+N 
Sbjct: 252 RKQMGEAAVKVAKAIGYINAGTVEFLYSK--GNFYFLEVNT 290


>gi|261838417|gb|ACX98183.1| biotin carboxylase [Helicobacter pylori 51]
          Length = 455

 Score = 80.2 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 38/225 (16%), Positives = 78/225 (34%), Gaps = 14/225 (6%)

Query: 49  LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
            + D  F   +G   E+     I     + +        AL  DK ++K V+   G+P+ 
Sbjct: 84  FEADAIFPG-YGFLSENQNFVEICSHHSLEFIGPSAKVMALMSDKSKAKSVMKEAGMPMI 142

Query: 109 PS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSW 160
                 +   +   +    I  P +IK   GG   G+ V++    +         ++ S 
Sbjct: 143 EGSDGLLKSYQEAEEIADKIGYPVIIKAAAGGGGRGMRVVEDKSRLKNLYLAAETEALSA 202

Query: 161 NHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI 219
                + +E+++     +   ++ D   +V  +          + K             +
Sbjct: 203 FGDGSVYLEKFINKPKHIEVQILADKHGNVIHVGERDCSVQRRQQKLI----EETPAVVL 258

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              I K +   A  A + IG  G    +FL D   +  +++E+N 
Sbjct: 259 EESIRKRLLETAIKAAKYIGYVGAGTFEFLLDSNMKDFYFMEMNT 303


>gi|229493823|ref|ZP_04387601.1| carbamoyl-phosphate synthase L chain, ATP binding domain protein
           [Rhodococcus erythropolis SK121]
 gi|229319322|gb|EEN85165.1| carbamoyl-phosphate synthase L chain, ATP binding domain protein
           [Rhodococcus erythropolis SK121]
          Length = 1827

 Score = 80.2 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 46/233 (19%), Positives = 86/233 (36%), Gaps = 14/233 (6%)

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
            +   L   K D  + V  G   ED     I+  L I +      A  L  DK+ +K + 
Sbjct: 71  ELERALLAAKADAVW-VGWGFVAEDPAFAEIVAKLGITFIGPSADAMRLLGDKVAAKILA 129

Query: 101 SSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL- 155
              GVPV P     +            I  P +IK   GG   GI  +  +  + + L  
Sbjct: 130 EKVGVPVAPWSGGPVETRADARRHAQSIGYPLIIKARSGGGGRGIRKVWAEDELEVALER 189

Query: 156 ---QSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
              ++        + +E+ V D   +   V+ D   +V    V          K    ++
Sbjct: 190 TQGEAERSFGDPVVFLERLVTDARHVEVQVIADNHGNVWAPGVRDCSIQRRNQKVIEESA 249

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + V    +  +    +++++    +A G +G    ++L+ P ++   +LE+N 
Sbjct: 250 SPV----LTEEQSDHLKKVSAELVKAAGYQGAGTVEYLYQPENKLFTFLEVNT 298


>gi|330982173|gb|EGH80276.1| 3-methylcrotonyl-CoA carboxylase alpha subunit [Pseudomonas
           syringae pv. aptata str. DSM 50252]
          Length = 649

 Score = 80.2 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 76/221 (34%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      +E   + +      A      K  +K ++   GVP+ P    
Sbjct: 81  AIHPGYGFLSENADFARAIENAGLIFLGPPASAIDAMGSKSAAKALMEQAGVPLVPGYHG 140

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
               ++    +   I  P ++K   GG   G+ V++    +   L  +           +
Sbjct: 141 EAQDIETFRAAAERIGYPVLLKATAGGGGKGMKVVEHTGELAEALASAQREALSSFGDAR 200

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           +L+E+YV     +   V  D       +            K          PA  +   +
Sbjct: 201 MLVEKYVLTPRHVEIQVFADRHGHCLYLNERDCSIQRRHQK-----VVEEAPAPGLTASL 255

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            K +   A  A QAIG  G    +FL D    + F++E+N 
Sbjct: 256 RKAMGEAAVKAAQAIGYVGAGTVEFLLDAR-GEFFFMEMNT 295


>gi|313903382|ref|ZP_07836774.1| carbamoyl-phosphate synthase large subunit [Thermaerobacter
           subterraneus DSM 13965]
 gi|313466470|gb|EFR61992.1| carbamoyl-phosphate synthase large subunit [Thermaerobacter
           subterraneus DSM 13965]
          Length = 1181

 Score = 80.2 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 53/296 (17%), Positives = 103/296 (34%), Gaps = 32/296 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH-----GNFG 63
           S       L   G++   +         D D +  L    L P+   NVL      G   
Sbjct: 618 SAVHAVRTLRALGYRAVIVNNNPETVSTDFDTADRLYFEPLTPEDVRNVLDLEQPVGVLA 677

Query: 64  EDG-----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RF 116
           + G      + A L    +P   +   +  ++  + R  Q+++  G+   P         
Sbjct: 678 QFGGQTAVNLVAPLAAAGVPILGTAPESVDVAESRERFDQLLARLGLQRPPGAAARSVAE 737

Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
            M +   I  P +++P        + V    + +   L  ++       + I++Y+ G+E
Sbjct: 738 AMAAAERIGYPVIVRPSYVLGGRAMQVASSPEELAAYLETAARVAGDRPVWIDRYIAGME 797

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAH 235
           L    + D    V    +   +           +S  V+PA  +P  +  +V+       
Sbjct: 798 LEVDAVADGETVVIPAVMRHIERAGVHS----GDSIAVVPAPGVPAAVLAQVEAATVALA 853

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +A+  RG+    F++D   R ++ LE+N +   T     P +    G    EL   
Sbjct: 854 RALEVRGVINLQFVWD--GRTLYVLEVNPRASRT----VPFITKATGVPLAELATR 903



 Score = 66.3 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 47/287 (16%), Positives = 103/287 (35%), Gaps = 35/287 (12%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI---------DVD------------RSVGLV 45
           G ++E + S   G     AL++ G +V  +         D                   V
Sbjct: 47  GQAAEFDYS---GTQACRALKEEGLEVVLLNSNPATVMTDPGTADRIYVEPLTAEFAEAV 103

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   +PD     L G  G +  ++     +LE   +    +   A   + D+   K+++ 
Sbjct: 104 IRRERPDALLPTLGGQVGLNLAMELVRAGVLERYGVQLLGTPPEAIQRAEDREAFKELML 163

Query: 102 SCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
           + G PV  S +V  +   +     +  P + +P       G  + + +  +   + +  +
Sbjct: 164 AIGEPVPQSTIVRSYEEALAFARRVGFPVIARPGYTLGGTGGGIARNEVELAALVDRGLA 223

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA- 217
            +   Q+L+E+ + G  E+   V+ D + +   I   ++      +   + +S  V PA 
Sbjct: 224 ASPIGQVLLEESLLGWKEIEFEVIRDGAGNAIAICSMENVD---PVGVHTGDSIVVAPAL 280

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +     + ++  +     AIG  G         P   +   +E+N 
Sbjct: 281 TLTDRQLQRLRSASLRIVGAIGVEGGCNVQLALRPDGAEYRVIEVNP 327


>gi|291279616|ref|YP_003496451.1| propionyl-CoA carboxylase subunit alpha [Deferribacter
           desulfuricans SSM1]
 gi|290754318|dbj|BAI80695.1| propionyl-CoA carboxylase, alpha subunit [Deferribacter
           desulfuricans SSM1]
          Length = 506

 Score = 80.2 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 33/215 (15%), Positives = 73/215 (33%), Gaps = 14/215 (6%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
           +G + E+           I +         L   K  +++ +   GVPV P        +
Sbjct: 83  YGFYAENADFARACADEGIIFIGPSPEHIELMGSKTGARKAMQEAGVPVVPGTKDPVEDL 142

Query: 119 DSQHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG----DQLLIEQ 170
           +        I  P ++K + GG   G+ +++K + +      + S         ++ IE+
Sbjct: 143 EEAKKVADEIGYPIMLKAVHGGGGKGMRLVEKPEDLESAFRTAQSEALNAFGSSEVYIEK 202

Query: 171 YV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           ++     +   VMGD   +       +        K             I  +   ++  
Sbjct: 203 FIVQPHHVEIQVMGDMHGNALHFFERECSIQRRHQK----VIEEAPSPFINDETRAKMYE 258

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +A  A + +G       +F+     +  ++LE+N 
Sbjct: 259 VAVKAVKKLGYYSAGTLEFIV-GADQNFYFLEMNT 292


>gi|260432987|ref|ZP_05786958.1| acetyl-CoA carboxylase, biotin carboxylase [Silicibacter
           lacuscaerulensis ITI-1157]
 gi|260416815|gb|EEX10074.1| acetyl-CoA carboxylase, biotin carboxylase [Silicibacter
           lacuscaerulensis ITI-1157]
          Length = 449

 Score = 80.2 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 73/220 (33%), Gaps = 18/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---- 109
            +H  +G   E+     I+E   I +         +  DK+ +K  +   GVP  P    
Sbjct: 77  AIHPGYGFLSENSDFVQIVEDHGITFIGPTAEHIRIMGDKITAKDTMKELGVPCVPGSDG 136

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
            +            I  P +IK   GG   G+ V +    +    + + +        D+
Sbjct: 137 GVPDLATAKRIGEEIGYPVIIKATAGGGGRGMKVAQTAAEMESAFMTARAEGKAAFGNDE 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+Y+     +   V GD   +   +            K             I  +  
Sbjct: 197 VYIEKYLTTPRHIEIQVFGDGKGNAVHLGERDCSLQRRHQKVF----EEAPGPCITPEER 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             + ++   A   I   G    +FL+   + + +++E+N 
Sbjct: 253 ARIGKVCADAVAKINYIGAGTIEFLY--ENGEFYFIEMNT 290


>gi|284102430|ref|ZP_06386048.1| carbamoyl phosphate synthase large subunit [Candidatus Poribacteria
           sp. WGA-A3]
 gi|283830322|gb|EFC34555.1| carbamoyl phosphate synthase large subunit [Candidatus Poribacteria
           sp. WGA-A3]
          Length = 1100

 Score = 80.2 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 50/278 (17%), Positives = 95/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG      L+  G++V  I         D +              V  +L   +PD    
Sbjct: 29  SGTQACKTLKQEGYEVVLINSNPATIMTDPELADRTYIEPITVEVVERILEEERPDALLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +    +  LE   +    +   A   + D+   K+ + + G+    S L
Sbjct: 89  TMGGQTALNVTMSLQERGALEKYNVQLIGANYEAINKAEDRDAFKRAMDNIGLATPTSRL 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      M+   ++  P +++P       G  +    +    D+  +   +   + LIE+
Sbjct: 149 IRNREDAMNFLEIVGFPAIVRPSFTLGGAGGNIAYNREEFERDVDWALLTSPVGEALIER 208

Query: 171 YVDG-IELTCGVMGD-ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            + G  E    VM D     V    +   D           +S  V PA  +    Y+ +
Sbjct: 209 SLIGWKEYELEVMRDLNDNVVIVCPIENFDAMGIHT----GDSITVAPAMTLTDKEYQRM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  A    Q IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RDAAIRIIQEIGVETGGSNIQFALNPENGEMIVIEMNP 302



 Score = 48.2 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/196 (15%), Positives = 70/196 (35%), Gaps = 8/196 (4%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ--HLISPPYV 129
           L    IP   +   A   + D+ R   ++++ G+    +         S     I  P +
Sbjct: 681 LARAGIPILGTSPDAIDRAEDRERFSALITTLGLRQPRNGAARSGDEASAVASRIGYPVI 740

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  + S+   +  +        LLI+QY+ D IE+    + D +  
Sbjct: 741 VRPSYVLGGRAMQIVYDEPSLRSYVENTVMTADQFPLLIDQYLTDAIEVDVDAVSDGAEV 800

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           V    +   +       +S  ++  + P  +  ++   ++       + +   G+    F
Sbjct: 801 VVAGIMEHVEEAGI---HSGDSACSLPPHSLTPELIDRIRTQTVALARELQVVGLMNVQF 857

Query: 249 LFDPLSRKVFWLEINV 264
                  +V  LE+N 
Sbjct: 858 AV--QENEVSILEVNP 871


>gi|254426822|ref|ZP_05040529.1| Carbamoyl-phosphate synthase L chain, ATP binding domain protein
           [Alcanivorax sp. DG881]
 gi|196192991|gb|EDX87950.1| Carbamoyl-phosphate synthase L chain, ATP binding domain protein
           [Alcanivorax sp. DG881]
          Length = 669

 Score = 80.2 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 42/228 (18%), Positives = 81/228 (35%), Gaps = 27/228 (11%)

Query: 58  LHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI--- 111
           +H  +G   E+    A  +   I +      A  +  DK  ++Q+++  GVPV P     
Sbjct: 80  IHPGYGFLSENTAFAAACDQAGIIFVGPNARAIEVMGDKAAARQLMAESGVPVLPGFDKE 139

Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS-----SWNHGDQ 165
              +     +   +  P +IK + GG   G+ V+   +     L  +      ++   D+
Sbjct: 140 GASDSELTAAAAKVGFPLLIKAVAGGGGKGMRVVNGAEEFDEALAAARREASNAFG-DDR 198

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           +L+E+Y+     +   V  D   +               ++          PA  +    
Sbjct: 199 VLLERYLATARHVEVQVFADNHGNAV-----HLFERDCSVQRRHQKIIEEAPAPGLDEAT 253

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLF-------DPLSRKVFWLEINV 264
                  A  A +AI  RG    +FL+       D    + F++E+N 
Sbjct: 254 RDAFGHAAVQAAKAIDYRGAGTVEFLYAPPAADSDVDGGQFFFMEMNT 301


>gi|28211360|ref|NP_782304.1| putative carbamoyl-phosphate synthase large chain [Clostridium
           tetani E88]
 gi|28203801|gb|AAO36241.1| putative carbamoyl-phosphate synthase large chain [Clostridium
           tetani E88]
          Length = 382

 Score = 80.2 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 31/181 (17%), Positives = 76/181 (41%), Gaps = 17/181 (9%)

Query: 71  ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS---PP 127
           + E + +        A+ +S DK   ++ +    +P    +LVN         +     P
Sbjct: 82  VCEKMNL--MGLSSRAAEISTDKFLLRECMKKNNIPCPRYLLVNDKKDICNKKLEGFEFP 139

Query: 128 YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM-GDAS 186
            +IKP+   +S G+  +   Q + L   +S  ++   ++++E+++DG E +   +  + +
Sbjct: 140 LIIKPVDSSASRGVCKVYNLQELKLAYEESYHYSKSGKVILEEFLDGPEYSVETLTQNGT 199

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRS 246
            ++  I    +  Y + ++       H++PA +  +   +++ +      AI      R 
Sbjct: 200 NNIVAITEKHTSGYPHSVE-----DRHIVPAYLNKEQEYKIKDMVNKIINAI------RI 248

Query: 247 D 247
           D
Sbjct: 249 D 249


>gi|254454350|ref|ZP_05067787.1| pyruvate carboxylase [Octadecabacter antarcticus 238]
 gi|198268756|gb|EDY93026.1| pyruvate carboxylase [Octadecabacter antarcticus 238]
          Length = 1147

 Score = 80.2 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 34/221 (15%), Positives = 78/221 (35%), Gaps = 18/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+           I +            DK  +++V    GVPV P+  V
Sbjct: 80  AIHPGYGLLSENPDFVDACVANNIKFIGPRAETMRQLGDKASARRVAVEAGVPVIPATEV 139

Query: 114 NRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-----SSSWNHGD 164
               M +       +  P ++K   GG   G+  I  +  +   +L+      +++ + +
Sbjct: 140 LGDDMAAIKKEAAAVGYPLMLKASWGGGGRGMRAIMDESELEEKVLEGRREADAAFGNSE 199

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
             L +  +    +   ++GD+   +  +           ++  +       PA  +    
Sbjct: 200 GYLEKMIIKARHVEVQILGDSHGAIYHLWE-----RDCSVQRRNQKVVERAPAPYLSGTQ 254

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +++  L     + +        +FL D  S + F++E+N 
Sbjct: 255 REQICALGKKICEHVNYECAGTVEFLMDMDSGEFFFIEVNP 295


>gi|313892194|ref|ZP_07825787.1| pyruvate carboxylase [Dialister microaerophilus UPII 345-E]
 gi|313119332|gb|EFR42531.1| pyruvate carboxylase [Dialister microaerophilus UPII 345-E]
          Length = 1142

 Score = 80.2 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 43/276 (15%), Positives = 94/276 (34%), Gaps = 23/276 (8%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59
           +AV     S E  +SL   +A  + L   G +     +D   +  +      D      +
Sbjct: 31  VAV----YSKEDVLSLHRNRADEAYLIGEGDEPVAAYLDIEEIIRICKEHNVDAVHPG-Y 85

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI--LVNRFT 117
           G   E+  +        I +         +  DK+ +++      +P+ P     V  F 
Sbjct: 86  GFLAENVNLARRCHEEGIIFIGPREEHLVMFGDKVNAREQAKLADIPMIPGTHGAVKSFD 145

Query: 118 M--DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS-----SSWNHGDQLLIEQ 170
              +       P +IK + GG   G+  +     +      +      ++   D++  E+
Sbjct: 146 DVKEFAEKYGFPIMIKAVNGGGGRGMRSVDCMDDLVSAYSMAKTEAKLAFG-DDEVYAER 204

Query: 171 -YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQ 228
             V+   +   ++GD   ++  +            K        + PA  +PL++ K + 
Sbjct: 205 CVVNPKHIEVQIIGDGKGNIIHLFERDCSIQRRHQK-----VIEMAPAWSLPLELRKRIC 259

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             A    + +        +FL D   +  +++E+N 
Sbjct: 260 DAAVKLMKNVKYLNAGTVEFLVDENQKDFYFIEVNP 295


>gi|297180038|gb|ADI16263.1| biotin carboxylase [uncultured bacterium HF0010_16H03]
          Length = 402

 Score = 80.2 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 30/217 (13%), Positives = 74/217 (34%), Gaps = 18/217 (8%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL--VNRF 116
           +G   ED     + E     +            DK+ +K +    G+ + P     + + 
Sbjct: 82  YGFLAEDSNFAEMCEKSGFKFIGPSSETIKNMGDKITAKTLAEDAGIQIVPGYKEDIPKN 141

Query: 117 TMDSQHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQLLIE 169
             + + +   I  P +IK   GG   G+ V++ +  +      +          +++ +E
Sbjct: 142 EEEFKKIARDIGYPIMIKATAGGGGRGMRVVEHEDDLISHAEITMQEAKNAFGNEKIYLE 201

Query: 170 QYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
           +++ +   +   ++GD       +            K          PA+ I  +   + 
Sbjct: 202 KFIGNPRHIEVQIVGDGKGHAIHLGTRDCSMQRRHQK-----IIEEAPARNINEEALNKT 256

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
                   + I   G+   +FL+     + +++E+N 
Sbjct: 257 YEACTNLCKKIKYEGVGTIEFLY--EDGEFYFIEMNT 291


>gi|302327373|gb|ADL26574.1| purD domain protein [Fibrobacter succinogenes subsp. succinogenes
           S85]
          Length = 413

 Score = 80.2 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 50/267 (18%), Positives = 91/267 (34%), Gaps = 43/267 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID--------------------VDR 40
           +A+++GG S    V L       + L++ G+ V  ID                       
Sbjct: 6   LAIVLGGTSP--HVLLV------NKLKERGYYVLLIDYLENPPAKKVADEHLRESTLDQD 57

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQA------ILELLEIPYTHSGILASALSMDKM 94
            V  +    K DL  +          + QA      + E L +P+ +S    S    DK 
Sbjct: 58  KVLEIAKERKADLVISTC--------IDQANSVCCYVAEKLGLPHPYS-YKTSLEVTDKG 108

Query: 95  RSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154
             K++    G+P               +L+  P V+KP+   SS G+  +  D+   L +
Sbjct: 109 LMKRIFVENGIPTSNYTTTESVDSIDWNLVQYPAVVKPVDCNSSKGVRRVDSDEETRLRV 168

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHV 214
            ++   +     +IE +  G E+    +   S     +   K    S        + + V
Sbjct: 169 AEAIEMSRTKTAIIEGFNSGAEIQVDCVSTQSGVKVMMTRQKQKIASDGNDMVLQSYSSV 228

Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCR 241
            PA +  +  ++ Q +A     A    
Sbjct: 229 FPAPLSDEFKRQAQEIAEKIANAFKLE 255


>gi|226950737|ref|YP_002805828.1| pyruvate carboxylase [Clostridium botulinum A2 str. Kyoto]
 gi|226842356|gb|ACO85022.1| pyruvate carboxylase [Clostridium botulinum A2 str. Kyoto]
          Length = 1144

 Score = 80.2 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 78/222 (35%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+           I +            DK++SK V    GVP  P +  
Sbjct: 80  AIHPGYGFLAENSEFARKCREAGIEFIGPTAEMMEKLGDKIKSKIVAEKAGVPTIPGVQK 139

Query: 114 ----NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP-----LDLLQSSSWNHGD 164
                +  ++       P ++K   GG   G+ +++ ++ +             ++   D
Sbjct: 140 PIKSEKEALEFARYCGYPIMLKAAAGGGGRGMRIVRTEEELISSFKSAKNEAKKAFGIDD 199

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + IE+Y++    +   ++GD   D+  +            K          PA  +P  
Sbjct: 200 -IFIEKYLENPKHIEVQILGDKHGDIVHLYERDCSIQRRHQK-----VIEFTPAFALPKK 253

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +E+   A    + +G R     +FL D      +++E+N 
Sbjct: 254 KREEICNDALKIAKTVGYRSAGTLEFLVDTTGNH-YFIEMNP 294


>gi|312958745|ref|ZP_07773265.1| acetyl-CoA carboxylase [Pseudomonas fluorescens WH6]
 gi|311287288|gb|EFQ65849.1| acetyl-CoA carboxylase [Pseudomonas fluorescens WH6]
          Length = 453

 Score = 80.2 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 37/217 (17%), Positives = 75/217 (34%), Gaps = 18/217 (8%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI--LVNRF 116
           +G   E+      +E     +         L  DK+ +K  + + GVP  P     +   
Sbjct: 88  YGFLAENADFAEQVEKSGFAFIGPKAETIRLMGDKVSAKDAMIAAGVPTVPGSDGPLPED 147

Query: 117 TMDSQHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGDQLLIE 169
              +  +   +  P +IK   GG   G+ V+ K++ +         ++ +W     + +E
Sbjct: 148 EETALRIGREVGYPVIIKAAGGGGGRGMRVVHKEEDLIEAAKQTRAEAGAWFGNPMVYLE 207

Query: 170 QYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
           +Y+     +   V+ D                   L+          PA  +     +EV
Sbjct: 208 KYLTNPRHVEVQVLSDGQGHAI-----HLGDRDCSLQRRHQKVLEEAPAPGLDETARQEV 262

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
                 A   I  RG    +FL+   + + +++E+N 
Sbjct: 263 LARCVKACIDISYRGAGTFEFLY--ENGRFYFIEMNT 297


>gi|188588041|ref|YP_001920482.1| biotin carboxylase [Clostridium botulinum E3 str. Alaska E43]
 gi|188498322|gb|ACD51458.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Clostridium
           botulinum E3 str. Alaska E43]
          Length = 450

 Score = 80.2 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 41/220 (18%), Positives = 85/220 (38%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  FG   E+     + +   I +      +  L  DK R+++++    VPV P    
Sbjct: 77  AIHPGFGFLSENAKFAKMCKECNIKFIGPDYESIELMGDKARAREIMKKANVPVVPGYEG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGDQ 165
            I      +     I  P +IK   GG   GI + + D+           +S +    D+
Sbjct: 137 EIENETHALGIAKKIGYPIMIKAAAGGGGKGIRIARSDEEFLKGYKTAKSESKACFGDDR 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           L IE++++    +   ++ D   +V  +   +        K      +++    +  +I 
Sbjct: 197 LYIEKFIEKPRHIEFQILADEYGNVVHLGERECSLQRKNQKVLEEAPSNI----LNEEIR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +  +A  A +A+  +     +FLFD      +++E+N 
Sbjct: 253 NTMGEIAKKAAKAVNYKNAGTIEFLFDK-DNNFYFMEMNT 291


>gi|168179040|ref|ZP_02613704.1| pyruvate carboxylase [Clostridium botulinum NCTC 2916]
 gi|182669999|gb|EDT81975.1| pyruvate carboxylase [Clostridium botulinum NCTC 2916]
          Length = 1144

 Score = 80.2 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 78/222 (35%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+           I +            DK++SK V    GVP  P +  
Sbjct: 80  AIHPGYGFLAENSEFARKCREAGIEFIGPTAEMMEKLGDKIKSKIVAEKAGVPTIPGVQK 139

Query: 114 ----NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP-----LDLLQSSSWNHGD 164
                +  ++       P ++K   GG   G+ +++ ++ +             ++   D
Sbjct: 140 PIKSEKEALEFARYCGYPIMLKAAAGGGGRGMRIVRTEEELISSFKSAKNEAKKAFGIDD 199

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + IE+Y++    +   ++GD   D+  +            K          PA  +P  
Sbjct: 200 -IFIEKYLENPKHIEVQILGDKHGDIVHLYERDCSIQRRHQK-----VIEFTPAFALPKK 253

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +E+   A    + +G R     +FL D      +++E+N 
Sbjct: 254 KREEICNDALKIAKTVGYRSAGTLEFLVDTTGNH-YFIEMNP 294


>gi|163745964|ref|ZP_02153323.1| propionyl-CoA carboxylase, alpha subunit [Oceanibulbus indolifex
           HEL-45]
 gi|161380709|gb|EDQ05119.1| propionyl-CoA carboxylase, alpha subunit [Oceanibulbus indolifex
           HEL-45]
          Length = 681

 Score = 80.2 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 79/221 (35%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      L+ + + +    + A     DK+ SK++    GV   P  + 
Sbjct: 77  AVHPGYGFLSENSKFAEALDAIGVAFVGPPVGAIEKMGDKITSKKIAQEAGVSTVPGYMG 136

Query: 114 NRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGD 164
                D      + I  P ++K   GG   G+ +   D+             ++S+   D
Sbjct: 137 LIEDADEAVKISNEIGYPVMLKASAGGGGKGMRIAWNDEEAREGFQSSKNEAANSFG-DD 195

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           ++ IE++V     +   V+ DA  +   +   +        K             +    
Sbjct: 196 RIFIEKFVTQPRHIEIQVLCDAHGNGIYLGERECSIQRRNQK----VVEEAPSPFLDEAT 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            K +   A    QA+G       +F+ D  ++  ++LE+N 
Sbjct: 252 RKAMGEQAVALAQAVGYTSAGTVEFIVDG-NKDFYFLEMNT 291


>gi|58584000|ref|YP_203016.1| biotin carboxylase [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84625778|ref|YP_453150.1| biotin carboxylase [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|188574669|ref|YP_001911598.1| biotin carboxylase [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|58428594|gb|AAW77631.1| biotin carboxylase [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84369718|dbj|BAE70876.1| biotin carboxylase [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|188519121|gb|ACD57066.1| biotin carboxylase [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 675

 Score = 80.2 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 74/221 (33%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H  +G   E+           I +      A     DK  +K ++   GVP+ P    
Sbjct: 90  AIHPGYGFLSENATFAEACAHAGIVFIGPPAAAIRAMGDKSAAKALMQRAGVPLTPGYHG 149

Query: 113 ---VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
                 F       I  P +IK   GG   G+  +    +    L     ++ S      
Sbjct: 150 DEQAPAFLRAQADAIGYPVLIKASAGGGGKGMRRVDASAAFEDALASCQREAQSAFGNAH 209

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           +L+E+YV+    +   V GD     T   V         ++          PA  +    
Sbjct: 210 VLVEKYVERPRHIEIQVFGD-----THGQVVHLFERDCSVQRRHQKVLEEAPAPGMSEAR 264

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              + + A  A QA+G  G    +F+  P     +++E+N 
Sbjct: 265 RAAMGKAAVDAAQAVGYVGAGTVEFIAGP-DGDFYFMEMNT 304


>gi|148255593|ref|YP_001240178.1| acetyl-CoA carboxylase biotin carboxylase subunit [Bradyrhizobium
           sp. BTAi1]
 gi|146407766|gb|ABQ36272.1| acetyl-CoA carboxylase carboxyltransferase subunit alpha
           [Bradyrhizobium sp. BTAi1]
          Length = 449

 Score = 80.2 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 78/222 (35%), Gaps = 22/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     IL    + +         L  DK+ +K+     G+PV P    
Sbjct: 77  AVHPGYGFLSENARFAEILADHNLHFIGPKAEHIRLMGDKIEAKKTAKRLGIPVVPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS-----SWNHGD 164
            +  ++  M     I  P ++K   GG   G+ V   +  + L L  ++     ++    
Sbjct: 137 AVTPDQDAMAIAKEIGFPVLVKAAAGGGGRGMKVAHTEADLQLALTTAANEAKSAFG-DA 195

Query: 165 QLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+Y+     +   V+GD                   L+          P+  +   
Sbjct: 196 SVYLEKYLQKPRHIEIQVLGDGRGGAI-----HLGERDCSLQRRHQKVWEEGPSPVLDAA 250

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              ++      A Q +   G+   +FL+     + +++E+N 
Sbjct: 251 ARAKIGNTVAKAMQELKYIGVGTIEFLY--EDGEFYFIEMNT 290


>gi|299535044|ref|ZP_07048370.1| acetyl-CoA carboxylase biotin carboxylase subunit [Lysinibacillus
           fusiformis ZC1]
 gi|298729540|gb|EFI70089.1| acetyl-CoA carboxylase biotin carboxylase subunit [Lysinibacillus
           fusiformis ZC1]
          Length = 452

 Score = 80.2 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 27/220 (12%), Positives = 79/220 (35%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+           + +        A    K+ +++ + + GVP+   +  
Sbjct: 77  AVHPGYGLLSENANFAKRCREAGLVFIGPSADVIASMGSKLEARKTMKAAGVPIVEGVET 136

Query: 114 NRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
               ++        +  P ++K   GG  +G+ +++  + +         ++ S+     
Sbjct: 137 PVKDVEEATSIAERLGYPIMLKASAGGGGIGMQLVENAEELAKAFEGNQKRAQSFFGDGT 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+++ +   +   ++ D   +V  +   +        K             I  +  
Sbjct: 197 MYMERFIANPHHVEVQIIADHQGNVVPLFERECSIQRRNQK----VVEEAPSPFISQETR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +++   +  A + IG       ++L D   +  ++LE+N 
Sbjct: 253 EKMLEASVKAAKHIGYVNAGTIEYLVDE-DQNFYFLEMNT 291


>gi|159040259|ref|YP_001539512.1| carbamoyl-phosphate synthase L chain ATP-binding [Salinispora
           arenicola CNS-205]
 gi|157919094|gb|ABW00522.1| Carbamoyl-phosphate synthase L chain ATP-binding [Salinispora
           arenicola CNS-205]
          Length = 674

 Score = 80.2 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 40/211 (18%), Positives = 79/211 (37%), Gaps = 17/211 (8%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
           +G   E+      +    + +      A A   DK+ +K +++  GVP+ PS        
Sbjct: 82  YGFLAENAEFATAVTDAGLTWVGPPAKAIAAMGDKLAAKTLLAEAGVPMLPSWT------ 135

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQLLIEQYVD- 173
           +   +   P ++K   GG   G+ V++    +   +  +            + IE+YV+ 
Sbjct: 136 EPDQVSGFPVLVKASAGGGGRGMRVVRAADGLADAVASARREAASAFGDGTVFIERYVER 195

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           G  +   ++GD    VT +            K          P  +  ++ + +   A  
Sbjct: 196 GRHVEVQILGDRFGTVTALGARDCSIQRRHQK-----IVEEAPGVLAPEVRQRLHEAATA 250

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           A +A+   G    +FL  P    +F+LE+N 
Sbjct: 251 AGRAVDYVGAGTVEFLLAP-DGDIFFLEMNT 280


>gi|317501302|ref|ZP_07959505.1| acetyl-CoA carboxylase [Lachnospiraceae bacterium 8_1_57FAA]
 gi|331088334|ref|ZP_08337253.1| acetyl-CoA carboxylase [Lachnospiraceae bacterium 3_1_46FAA]
 gi|316897266|gb|EFV19334.1| acetyl-CoA carboxylase [Lachnospiraceae bacterium 8_1_57FAA]
 gi|330408578|gb|EGG88044.1| acetyl-CoA carboxylase [Lachnospiraceae bacterium 3_1_46FAA]
          Length = 449

 Score = 80.2 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 73/220 (33%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  FG   E+     + E  EI +            +K  ++  + + G+PV      
Sbjct: 77  AIHPGFGFLSENAKFAELCEQCEITFIGPDSKVIGKMGNKTEARATMIAAGIPVIRGTNG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL----DLLQSSSWNHGDQ 165
            +L           I  P +IK   GG   G+   + ++           ++        
Sbjct: 137 AVLDLEEGKKEAARIGYPVIIKAALGGGGKGMRTAQSEEEFESCFVTARKEAEKAFGDGT 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE +V+    +   ++ D+  ++  +            K           A +  ++ 
Sbjct: 197 MYIEHFVEHPRHIEFQILADSYGNIVHLGERDCSIQRNHQKMI----EECPCAALSDELR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K++   A  A +A G       +FL        +++E+N 
Sbjct: 253 KKMGETAVKAARAAGYTNAGTVEFLL-EKDGTFYFMEMNT 291


>gi|301308481|ref|ZP_07214435.1| ATP-grasp domain protein [Bacteroides sp. 20_3]
 gi|300833951|gb|EFK64567.1| ATP-grasp domain protein [Bacteroides sp. 20_3]
          Length = 401

 Score = 80.2 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 36/196 (18%), Positives = 75/196 (38%), Gaps = 14/196 (7%)

Query: 71  ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTMDSQHLIS-PP 127
           + +   +P        + L  DK + K   S  GV   P   I  +   +D+   +   P
Sbjct: 88  LCDTCALP--GYSEEVAELCNDKSKMKLRFSEYGVNTAPFKQIYTDEALLDAIDKVGGYP 145

Query: 128 YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC-GVMGDAS 186
            +IK      S GI      +       ++ S    D +L+E+++ G E      + +  
Sbjct: 146 VIIKATDLAGSQGIYKAVNKEEAFDGFCKAMSATRVDYVLVEKFLQGREFGAQAFISNGE 205

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS-R 245
                  +P  D   Y+   +     +V P +    + +++++ A +A +A+G    +  
Sbjct: 206 ---ILFVMPHGDIL-YQADTAVPVGHYV-PYECSDILREKIRKEAEMAIKAMGLNNCAVN 260

Query: 246 SDFLFDPLSRKVFWLE 261
            DF+    +  ++ LE
Sbjct: 261 IDFI--EENGVIYVLE 274


>gi|256114349|ref|ZP_05455082.1| pyruvate carboxylase [Brucella melitensis bv. 3 str. Ether]
 gi|265995648|ref|ZP_06108205.1| pyruvate carboxylase [Brucella melitensis bv. 3 str. Ether]
 gi|262766932|gb|EEZ12550.1| pyruvate carboxylase [Brucella melitensis bv. 3 str. Ether]
          Length = 1158

 Score = 80.2 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 33/199 (16%), Positives = 68/199 (34%), Gaps = 15/199 (7%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIK 131
            I +            +K+ ++ +    GVPV P+       MD        I  P ++K
Sbjct: 112 GIVFIGPKPETMRRLGNKVAARNLAIEIGVPVVPATDPLPDDMDEVKKLAAQIGYPLMLK 171

Query: 132 PLKGGSSLGIIVIKKDQSIP----LDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDAS 186
              GG   G+  I+ +  +         ++ +    D++ +E+ V+    +   ++GD  
Sbjct: 172 ASWGGGGRGMRAIRAEADLAREVMEAKREAKAAFGKDEVYLEKLVERARHVEVQILGDTY 231

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISR 245
            +   +            K          PA  +     +E+         A    G   
Sbjct: 232 GNAVHLFERDCSIQRRNQK-----VVERAPAPYLNDAQRRELADYGLKIAHATDYIGAGT 286

Query: 246 SDFLFDPLSRKVFWLEINV 264
            +FL D  + K +++E+N 
Sbjct: 287 VEFLMDADTGKFYFIEVNP 305


>gi|225853228|ref|YP_002733461.1| pyruvate carboxylase [Brucella melitensis ATCC 23457]
 gi|256263282|ref|ZP_05465814.1| pyruvate carboxylase [Brucella melitensis bv. 2 str. 63/9]
 gi|225641593|gb|ACO01507.1| pyruvate carboxylase [Brucella melitensis ATCC 23457]
 gi|263093248|gb|EEZ17345.1| pyruvate carboxylase [Brucella melitensis bv. 2 str. 63/9]
 gi|326409787|gb|ADZ66852.1| pyruvate carboxylase [Brucella melitensis M28]
 gi|326539503|gb|ADZ87718.1| pyruvate carboxylase [Brucella melitensis M5-90]
          Length = 1158

 Score = 80.2 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 33/199 (16%), Positives = 68/199 (34%), Gaps = 15/199 (7%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIK 131
            I +            +K+ ++ +    GVPV P+       MD        I  P ++K
Sbjct: 112 GIVFIGPKPETMRRLGNKVAARNLAIEIGVPVVPATDPLPDDMDEVKKLAAQIGYPLMLK 171

Query: 132 PLKGGSSLGIIVIKKDQSIP----LDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDAS 186
              GG   G+  I+ +  +         ++ +    D++ +E+ V+    +   ++GD  
Sbjct: 172 ASWGGGGRGMRAIRAEADLAREVMEAKREAKAAFGKDEVYLEKLVERARHVEVQILGDTY 231

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISR 245
            +   +            K          PA  +     +E+         A    G   
Sbjct: 232 GNAVHLFERDCSIQRRNQK-----VVERAPAPYLNDAQRRELADYGLKIAHATDYIGAGT 286

Query: 246 SDFLFDPLSRKVFWLEINV 264
            +FL D  + K +++E+N 
Sbjct: 287 VEFLMDADTGKFYFIEVNP 305


>gi|62290650|ref|YP_222443.1| pyruvate carboxylase [Brucella abortus bv. 1 str. 9-941]
 gi|82700564|ref|YP_415138.1| pyruvate carboxylase [Brucella melitensis biovar Abortus 2308]
 gi|189024862|ref|YP_001935630.1| pyruvate carboxylase [Brucella abortus S19]
 gi|237816151|ref|ZP_04595146.1| pyruvate carboxylase [Brucella abortus str. 2308 A]
 gi|254689938|ref|ZP_05153192.1| pyruvate carboxylase [Brucella abortus bv. 6 str. 870]
 gi|254698089|ref|ZP_05159917.1| pyruvate carboxylase [Brucella abortus bv. 2 str. 86/8/59]
 gi|254730973|ref|ZP_05189551.1| pyruvate carboxylase [Brucella abortus bv. 4 str. 292]
 gi|256258193|ref|ZP_05463729.1| pyruvate carboxylase [Brucella abortus bv. 9 str. C68]
 gi|260547114|ref|ZP_05822852.1| conserved hypothetical protein [Brucella abortus NCTC 8038]
 gi|260755473|ref|ZP_05867821.1| pyruvate carboxylase [Brucella abortus bv. 6 str. 870]
 gi|260758696|ref|ZP_05871044.1| pyruvate carboxylase [Brucella abortus bv. 4 str. 292]
 gi|260762530|ref|ZP_05874867.1| pyruvate carboxylase [Brucella abortus bv. 2 str. 86/8/59]
 gi|260884493|ref|ZP_05896107.1| pyruvate carboxylase [Brucella abortus bv. 9 str. C68]
 gi|297249043|ref|ZP_06932751.1| pyruvate carboxylase [Brucella abortus bv. 5 str. B3196]
 gi|62196782|gb|AAX75082.1| Pyc, pyruvate carboxylase [Brucella abortus bv. 1 str. 9-941]
 gi|82616665|emb|CAJ11747.1| Biotin/lipoyl attachment:HMG-CoA lyase-like:Biotin-requiring
           enzyme, attachment site:Conserved carboxylase
           region:Carbamoyl-p [Brucella melitensis biovar Abortus
           2308]
 gi|189020434|gb|ACD73156.1| Pyc, pyruvate carboxylase [Brucella abortus S19]
 gi|237788613|gb|EEP62826.1| pyruvate carboxylase [Brucella abortus str. 2308 A]
 gi|260095479|gb|EEW79357.1| conserved hypothetical protein [Brucella abortus NCTC 8038]
 gi|260669014|gb|EEX55954.1| pyruvate carboxylase [Brucella abortus bv. 4 str. 292]
 gi|260672956|gb|EEX59777.1| pyruvate carboxylase [Brucella abortus bv. 2 str. 86/8/59]
 gi|260675581|gb|EEX62402.1| pyruvate carboxylase [Brucella abortus bv. 6 str. 870]
 gi|260874021|gb|EEX81090.1| pyruvate carboxylase [Brucella abortus bv. 9 str. C68]
 gi|297174176|gb|EFH33533.1| pyruvate carboxylase [Brucella abortus bv. 5 str. B3196]
          Length = 1158

 Score = 80.2 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 33/199 (16%), Positives = 68/199 (34%), Gaps = 15/199 (7%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIK 131
            I +            +K+ ++ +    GVPV P+       MD        I  P ++K
Sbjct: 112 GIVFIGPKPETMRRLGNKVAARNLAIEIGVPVVPATDPLPDDMDEVKKLAAQIGYPLMLK 171

Query: 132 PLKGGSSLGIIVIKKDQSIP----LDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDAS 186
              GG   G+  I+ +  +         ++ +    D++ +E+ V+    +   ++GD  
Sbjct: 172 ASWGGGGRGMRAIRAEADLAREVMEAKREAKAAFGKDEVYLEKLVERARHVEVQILGDTY 231

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISR 245
            +   +            K          PA  +     +E+         A    G   
Sbjct: 232 GNAVHLFERDCSIQRRNQK-----VVERAPAPYLNDAQRRELADYGLKIAHATDYIGAGT 286

Query: 246 SDFLFDPLSRKVFWLEINV 264
            +FL D  + K +++E+N 
Sbjct: 287 VEFLMDADTGKFYFIEVNP 305


>gi|84501841|ref|ZP_00999999.1| acetyl/propionyl CoA carboxylase alpha subunit [Oceanicola
           batsensis HTCC2597]
 gi|84389836|gb|EAQ02470.1| acetyl/propionyl CoA carboxylase alpha subunit [Oceanicola
           batsensis HTCC2597]
          Length = 673

 Score = 80.2 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 85/221 (38%), Gaps = 18/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+    A +E   + +      A ++   K+ +K    + GVPV P    
Sbjct: 82  AVHPGYGFLSENAGFAAAVEAAGLVFIGPEPDAISMMGSKIEAKAAAEAAGVPVLPGYRG 141

Query: 112 --LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
               +   ++    +  P+++K   GG   G+ ++      P  +  + +          
Sbjct: 142 EDQSDARLLEEVEALGSPFLVKASAGGGGRGMRLVTDLGEAPEAIASARAEAQGAFGDPA 201

Query: 166 LLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDI 223
           + +E+Y      +   V+GD     T   V         L+ +        PA  +P  +
Sbjct: 202 VFLERYAPRARHVEVQVLGD-----THGTVLHLGDRDCSLQRNHQKLIEEAPAADLPEAV 256

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +++  A    QAIG R     ++L+DP   + F+LE+N 
Sbjct: 257 RDDMRAAAVRLAQAIGYRSAGTVEYLYDPARGEYFFLEMNT 297


>gi|239906852|ref|YP_002953593.1| carbamoyl-phosphate synthase large chain [Desulfovibrio magneticus
           RS-1]
 gi|239796718|dbj|BAH75707.1| carbamoyl-phosphate synthase large chain [Desulfovibrio magneticus
           RS-1]
          Length = 1078

 Score = 80.2 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 47/278 (16%), Positives = 102/278 (36%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG   A AL++ G++V  +         D               +V  ++A  +PD    
Sbjct: 29  SGSQAAKALKEEGYEVVLVNSNPATIMTDPGLADRTYIEPIEPGTVARIIARERPDALLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G  G +  V      +L+   +    + +     +  +   +  + + G+ +  S +
Sbjct: 89  TLGGQTGLNTAVALAESGVLDEYGVDLLGASLDVIKKAESRELFRIAMDNIGLKIPQSGI 148

Query: 113 VNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +      +    I  P +++P       G  V    + +        + +   ++++E+
Sbjct: 149 CHTMEDVKEWGKRIPFPIIVRPAYTLGGTGGGVAYNQEDLEKIASVGLAASMKSEIMLER 208

Query: 171 YVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            + G  E    VM D + + V   ++   D           +S  V PA+ +  D Y+++
Sbjct: 209 SIIGWKEFELEVMRDKADNCVIICSIENIDPMGVHT----GDSITVAPAQTLTDDEYQQM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  A    + IG   G S   F  +P   ++  +E+N 
Sbjct: 265 RNAAIAIMREIGVETGGSNVQFAVNPADGEMVIIEMNP 302



 Score = 59.8 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 47/291 (16%), Positives = 96/291 (32%), Gaps = 31/291 (10%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ------ 69
           AL + G +   +         D D S  L    L  +   N+L     E  +VQ      
Sbjct: 592 ALREMGVESIMVNSNPETVSTDYDTSDRLYFEPLTFEDVLNILEVEKPEGVIVQFGGQTP 651

Query: 70  ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--SILVNRFTMDSQHL 123
                 L    +    +   +   + ++ R + ++   G+      +             
Sbjct: 652 LNLAVPLLNAGVRILGTSPDSIDRAENRERFQTLLQKLGLRQPANGTAFTVEDAATIADK 711

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++     +      +   +    +LI++++        V  
Sbjct: 712 IGYPVVVRPSYVLGGRAMEIVYDRADLENYFKVAVVASGKHPILIDKFLVNATE---VDV 768

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRG 242
           DA  D T+  V     +  E    S +S  VLP   +   + KE++R      + +G  G
Sbjct: 769 DAVSDGTDTYVAGVMEHIEEAGIHSGDSACVLPPHSLDPALIKEIERQTVALAEELGVVG 828

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F        ++ LE+N +   T     P ++   G    +L   ++
Sbjct: 829 LMNIQFAV--KDGDIYILEVNPRASRTS----PFVSKATGVPLAKLATKVI 873


>gi|147677510|ref|YP_001211725.1| Acetyl/propionyl-CoA carboxylase, alpha subunit [Pelotomaculum
           thermopropionicum SI]
 gi|83699282|dbj|BAE54379.1| pyruvate carboxylase ATP-binding subunit [Pelotomaculum
           thermopropionicum]
 gi|146273607|dbj|BAF59356.1| Acetyl/propionyl-CoA carboxylase, alpha subunit [Pelotomaculum
           thermopropionicum SI]
          Length = 455

 Score = 80.2 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 79/220 (35%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     I     + +      A     +K  +++ +   GVPV P    
Sbjct: 77  AVHPGYGFLAENANFAEICASCGLVFIGPPPAAMQRMGEKALARETMLKAGVPVVPGSEG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGDQ 165
            I      +     I  P +IK   GG   G+ V+   + +   +     ++ +     +
Sbjct: 137 VIKDAAQALKLAGEIGYPVIIKASAGGGGRGMRVVHGREELENAIGTARAEAQAAFGSGE 196

Query: 166 LLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+Y V+   +   V+GD   ++  +            K             +  ++ 
Sbjct: 197 VYLEKYLVEPRHIEFQVLGDTHGNIIHLGERDCSIQRRNQK----VIEEAPSTALTPELR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +   A  A +A+G       +FL D  S   +++E+N 
Sbjct: 253 ERMGETAVRAARAVGYYSAGTVEFLVDKFSN-FYFMEMNT 291


>gi|294851023|ref|ZP_06791699.1| pyruvate carboxylase [Brucella sp. NVSL 07-0026]
 gi|294821666|gb|EFG38662.1| pyruvate carboxylase [Brucella sp. NVSL 07-0026]
          Length = 1158

 Score = 80.2 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 33/199 (16%), Positives = 68/199 (34%), Gaps = 15/199 (7%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIK 131
            I +            +K+ ++ +    GVPV P+       MD        I  P ++K
Sbjct: 112 GIVFIGPKPETMRRLGNKVAARNLAIEIGVPVVPATDPLPDDMDEVKKLAAQIGYPLMLK 171

Query: 132 PLKGGSSLGIIVIKKDQSIP----LDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDAS 186
              GG   G+  I+ +  +         ++ +    D++ +E+ V+    +   ++GD  
Sbjct: 172 ASWGGGGRGMRAIRAEADLAREVMEAKREAKAAFGKDEVYLEKLVERARHVEVQILGDTY 231

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISR 245
            +   +            K          PA  +     +E+         A    G   
Sbjct: 232 GNAVHLFERDCSIQRRNQK-----VVERAPAPYLNDAQRRELADYGLKIAHATDYIGAGT 286

Query: 246 SDFLFDPLSRKVFWLEINV 264
            +FL D  + K +++E+N 
Sbjct: 287 VEFLMDADTGKFYFIEVNP 305


>gi|254714628|ref|ZP_05176439.1| pyruvate carboxylase [Brucella ceti M644/93/1]
 gi|254717526|ref|ZP_05179337.1| pyruvate carboxylase [Brucella ceti M13/05/1]
 gi|261219361|ref|ZP_05933642.1| pyruvate carboxylase [Brucella ceti M13/05/1]
 gi|261322423|ref|ZP_05961620.1| pyruvate carboxylase [Brucella ceti M644/93/1]
 gi|260924450|gb|EEX91018.1| pyruvate carboxylase [Brucella ceti M13/05/1]
 gi|261295113|gb|EEX98609.1| pyruvate carboxylase [Brucella ceti M644/93/1]
          Length = 1158

 Score = 80.2 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 33/199 (16%), Positives = 68/199 (34%), Gaps = 15/199 (7%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIK 131
            I +            +K+ ++ +    GVPV P+       MD        I  P ++K
Sbjct: 112 GIVFIGPKPETMRRLGNKVAARNLAIEIGVPVVPATDPLPDDMDEVKKLAAQIGYPLMLK 171

Query: 132 PLKGGSSLGIIVIKKDQSIP----LDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDAS 186
              GG   G+  I+ +  +         ++ +    D++ +E+ V+    +   ++GD  
Sbjct: 172 ASWGGGGRGMRAIRAEADLAREVMEAKREAKAAFGKDEVYLEKLVERARHVEVQILGDTY 231

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISR 245
            +   +            K          PA  +     +E+         A    G   
Sbjct: 232 GNAVHLFERDCSIQRRNQK-----VVERAPAPYLNDAQRRELADYGLKIAHATDYIGAGT 286

Query: 246 SDFLFDPLSRKVFWLEINV 264
            +FL D  + K +++E+N 
Sbjct: 287 VEFLMDADTGKFYFIEVNP 305


>gi|163845358|ref|YP_001623013.1| pyruvate carboxylase [Brucella suis ATCC 23445]
 gi|163676081|gb|ABY40191.1| pyruvate carboxylase [Brucella suis ATCC 23445]
          Length = 1158

 Score = 80.2 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 33/199 (16%), Positives = 68/199 (34%), Gaps = 15/199 (7%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIK 131
            I +            +K+ ++ +    GVPV P+       MD        I  P ++K
Sbjct: 112 GIVFIGPKPETMRRLGNKVAARNLAIEIGVPVVPATDPLPDDMDEVKKLAAQIGYPLMLK 171

Query: 132 PLKGGSSLGIIVIKKDQSIP----LDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDAS 186
              GG   G+  I+ +  +         ++ +    D++ +E+ V+    +   ++GD  
Sbjct: 172 ASWGGGGRGMRAIRAEADLAREVMEAKREAKAAFGKDEVYLEKLVERARHVEVQILGDTY 231

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISR 245
            +   +            K          PA  +     +E+         A    G   
Sbjct: 232 GNAVHLFERDCSIQRRNQK-----VVERAPAPYLNDAQRRELADYGLKIAHATDYIGAGT 286

Query: 246 SDFLFDPLSRKVFWLEINV 264
            +FL D  + K +++E+N 
Sbjct: 287 VEFLMDADTGKFYFIEVNP 305


>gi|161619705|ref|YP_001593592.1| pyruvate carboxylase [Brucella canis ATCC 23365]
 gi|260568856|ref|ZP_05839324.1| conserved hypothetical protein [Brucella suis bv. 4 str. 40]
 gi|161336516|gb|ABX62821.1| pyruvate carboxylase [Brucella canis ATCC 23365]
 gi|260154240|gb|EEW89322.1| conserved hypothetical protein [Brucella suis bv. 4 str. 40]
          Length = 1158

 Score = 80.2 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 33/199 (16%), Positives = 68/199 (34%), Gaps = 15/199 (7%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIK 131
            I +            +K+ ++ +    GVPV P+       MD        I  P ++K
Sbjct: 112 GIVFIGPKPETMRRLGNKVAARNLAIEIGVPVVPATDPLPDDMDEVKKLAAQIGYPLMLK 171

Query: 132 PLKGGSSLGIIVIKKDQSIP----LDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDAS 186
              GG   G+  I+ +  +         ++ +    D++ +E+ V+    +   ++GD  
Sbjct: 172 ASWGGGGRGMRAIRAEADLAREVMEAKREAKAAFGKDEVYLEKLVERARHVEVQILGDTY 231

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISR 245
            +   +            K          PA  +     +E+         A    G   
Sbjct: 232 GNAVHLFERDCSIQRRNQK-----VVERAPAPYLNDAQRRELADYGLKIAHATDYIGAGT 286

Query: 246 SDFLFDPLSRKVFWLEINV 264
            +FL D  + K +++E+N 
Sbjct: 287 VEFLMDADTGKFYFIEVNP 305


>gi|23502636|ref|NP_698763.1| pyruvate carboxylase [Brucella suis 1330]
 gi|148559515|ref|YP_001259623.1| pyruvate carboxylase [Brucella ovis ATCC 25840]
 gi|225628340|ref|ZP_03786374.1| pyruvate carboxylase [Brucella ceti str. Cudo]
 gi|254703551|ref|ZP_05165379.1| pyruvate carboxylase [Brucella suis bv. 3 str. 686]
 gi|254708785|ref|ZP_05170596.1| pyruvate carboxylase [Brucella pinnipedialis B2/94]
 gi|256030311|ref|ZP_05443925.1| pyruvate carboxylase [Brucella pinnipedialis M292/94/1]
 gi|256061810|ref|ZP_05451945.1| pyruvate carboxylase [Brucella neotomae 5K33]
 gi|256160484|ref|ZP_05458173.1| pyruvate carboxylase [Brucella ceti M490/95/1]
 gi|256255690|ref|ZP_05461226.1| pyruvate carboxylase [Brucella ceti B1/94]
 gi|256370187|ref|YP_003107698.1| pyruvate carboxylase [Brucella microti CCM 4915]
 gi|260167985|ref|ZP_05754796.1| pyruvate carboxylase [Brucella sp. F5/99]
 gi|261222898|ref|ZP_05937179.1| pyruvate carboxylase [Brucella ceti B1/94]
 gi|261316278|ref|ZP_05955475.1| pyruvate carboxylase [Brucella pinnipedialis B2/94]
 gi|261325813|ref|ZP_05965010.1| pyruvate carboxylase [Brucella neotomae 5K33]
 gi|261754184|ref|ZP_05997893.1| pyruvate carboxylase [Brucella suis bv. 3 str. 686]
 gi|261757428|ref|ZP_06001137.1| pyruvate carboxylase [Brucella sp. F5/99]
 gi|265987344|ref|ZP_06099901.1| pyruvate carboxylase [Brucella pinnipedialis M292/94/1]
 gi|265998857|ref|ZP_06111414.1| pyruvate carboxylase [Brucella ceti M490/95/1]
 gi|23348642|gb|AAN30678.1| pyruvate carboxylase [Brucella suis 1330]
 gi|148370772|gb|ABQ60751.1| pyruvate carboxylase [Brucella ovis ATCC 25840]
 gi|225616186|gb|EEH13234.1| pyruvate carboxylase [Brucella ceti str. Cudo]
 gi|256000350|gb|ACU48749.1| pyruvate carboxylase [Brucella microti CCM 4915]
 gi|260921482|gb|EEX88135.1| pyruvate carboxylase [Brucella ceti B1/94]
 gi|261295501|gb|EEX98997.1| pyruvate carboxylase [Brucella pinnipedialis B2/94]
 gi|261301793|gb|EEY05290.1| pyruvate carboxylase [Brucella neotomae 5K33]
 gi|261737412|gb|EEY25408.1| pyruvate carboxylase [Brucella sp. F5/99]
 gi|261743937|gb|EEY31863.1| pyruvate carboxylase [Brucella suis bv. 3 str. 686]
 gi|262553546|gb|EEZ09315.1| pyruvate carboxylase [Brucella ceti M490/95/1]
 gi|264659541|gb|EEZ29802.1| pyruvate carboxylase [Brucella pinnipedialis M292/94/1]
          Length = 1158

 Score = 80.2 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 33/199 (16%), Positives = 68/199 (34%), Gaps = 15/199 (7%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIK 131
            I +            +K+ ++ +    GVPV P+       MD        I  P ++K
Sbjct: 112 GIVFIGPKPETMRRLGNKVAARNLAIEIGVPVVPATDPLPDDMDEVKKLAAQIGYPLMLK 171

Query: 132 PLKGGSSLGIIVIKKDQSIP----LDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDAS 186
              GG   G+  I+ +  +         ++ +    D++ +E+ V+    +   ++GD  
Sbjct: 172 ASWGGGGRGMRAIRAEADLAREVMEAKREAKAAFGKDEVYLEKLVERARHVEVQILGDTY 231

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISR 245
            +   +            K          PA  +     +E+         A    G   
Sbjct: 232 GNAVHLFERDCSIQRRNQK-----VVERAPAPYLNDAQRRELADYGLKIAHATDYIGAGT 286

Query: 246 SDFLFDPLSRKVFWLEINV 264
            +FL D  + K +++E+N 
Sbjct: 287 VEFLMDADTGKFYFIEVNP 305


>gi|17986550|ref|NP_539184.1| pyruvate carboxylase [Brucella melitensis bv. 1 str. 16M]
 gi|256045380|ref|ZP_05448274.1| pyruvate carboxylase [Brucella melitensis bv. 1 str. Rev.1]
 gi|260565727|ref|ZP_05836210.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. 16M]
 gi|265991809|ref|ZP_06104366.1| pyruvate carboxylase [Brucella melitensis bv. 1 str. Rev.1]
 gi|17982157|gb|AAL51448.1| pyruvate carboxylase [Brucella melitensis bv. 1 str. 16M]
 gi|260151100|gb|EEW86195.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. 16M]
 gi|263002765|gb|EEZ15168.1| pyruvate carboxylase [Brucella melitensis bv. 1 str. Rev.1]
          Length = 1158

 Score = 80.2 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 33/199 (16%), Positives = 68/199 (34%), Gaps = 15/199 (7%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIK 131
            I +            +K+ ++ +    GVPV P+       MD        I  P ++K
Sbjct: 112 GIVFIGPKPETMRRLGNKVAARNLAIEIGVPVVPATDPLPDDMDEVKKLAAQIGYPLMLK 171

Query: 132 PLKGGSSLGIIVIKKDQSIP----LDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDAS 186
              GG   G+  I+ +  +         ++ +    D++ +E+ V+    +   ++GD  
Sbjct: 172 ASWGGGGRGMRAIRAEADLAREVMEAKREAKAAFGKDEVYLEKLVERARHVEVQILGDTY 231

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISR 245
            +   +            K          PA  +     +E+         A    G   
Sbjct: 232 GNAVHLFERDCSIQRRNQK-----VVERAPAPYLNDAQRRELADYGLKIAHATDYIGAGT 286

Query: 246 SDFLFDPLSRKVFWLEINV 264
            +FL D  + K +++E+N 
Sbjct: 287 VEFLMDADTGKFYFIEVNP 305


>gi|329121679|ref|ZP_08250296.1| pyruvate carboxylase [Dialister micraerophilus DSM 19965]
 gi|327468149|gb|EGF13635.1| pyruvate carboxylase [Dialister micraerophilus DSM 19965]
          Length = 1142

 Score = 80.2 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 43/276 (15%), Positives = 94/276 (34%), Gaps = 23/276 (8%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59
           +AV     S E  +SL   +A  + L   G +     +D   +  +      D      +
Sbjct: 31  VAV----YSKEDVLSLHRNRADEAYLIGEGDEPVAAYLDIEEIIRICKEHNVDAVHPG-Y 85

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI--LVNRFT 117
           G   E+  +        I +         +  DK+ +++      +P+ P     V  F 
Sbjct: 86  GFLAENVNLARRCHEEGIIFIGPREEHLVMFGDKVNAREQAKLADIPMIPGTHGAVKSFD 145

Query: 118 M--DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS-----SSWNHGDQLLIEQ 170
              +       P +IK + GG   G+  +     +      +      ++   D++  E+
Sbjct: 146 DVKEFAEKYGFPIMIKAVNGGGGRGMRSVDCMDDLVSAYSMAKTEAKLAFG-DDEVYAER 204

Query: 171 -YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQ 228
             V+   +   ++GD   ++  +            K        + PA  +PL++ K + 
Sbjct: 205 CVVNPKHIEVQIIGDGKGNIIHLFERDCSIQRRHQK-----VIEMAPAWSLPLELRKRIC 259

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             A    + +        +FL D   +  +++E+N 
Sbjct: 260 DAAVKLMKNVKYLNAGTVEFLVDENKKDFYFIEVNP 295


>gi|310642960|ref|YP_003947718.1| carbamoyl-phosphate synthase, large subunit [Paenibacillus polymyxa
           SC2]
 gi|309247910|gb|ADO57477.1| Carbamoyl-phosphate synthase, large subunit [Paenibacillus polymyxa
           SC2]
          Length = 1071

 Score = 80.2 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 43/288 (14%), Positives = 106/288 (36%), Gaps = 37/288 (12%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQIDVDRS---------------------VGLV 45
           G ++E + +   G     AL++ G +V  I+ + +                     V  +
Sbjct: 21  GQAAEFDYA---GTQACQALKEEGVEVVLINSNPATIMTDTNMADKVYIEPITLDFVTQI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   +PD     L G  G +  V+     +LE   +    + + +   + D+   + ++ 
Sbjct: 78  IRQERPDGLLPTLGGQTGLNMAVELARAGVLERENVKLLGTQLNSIEKAEDRDLFRDLMR 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
               PV  S++V     +++  + I  P +++P       G  +   ++ +   +     
Sbjct: 138 ELEQPVPESVIVTTLEESLEFANEIGYPIIVRPAYTLGGTGGGICATEEELRETVSSGLR 197

Query: 160 WNHGDQLLIEQYVDG---IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216
           ++   Q L+E+ + G   +E      G+ +     I V   + +     ++  +      
Sbjct: 198 YSPIGQCLVEKSIAGMKEVEYEVMRDGNDN----CIVVCNMENFDPVGVHTGDSIVVAPS 253

Query: 217 AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +    Y+ ++  +    +A+   G     F  DP S + + +E+N 
Sbjct: 254 QTLSDREYQMLRSASLKIIRALNIEGGCNVQFALDPHSYQYYVIEVNP 301



 Score = 64.8 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 40/265 (15%), Positives = 96/265 (36%), Gaps = 34/265 (12%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHG--------NFGEDGL 67
           A++ AG++   I         D + S  L    L  +   NV+           FG    
Sbjct: 588 AIQKAGYEAVIINNNPETVSTDFNTSDRLYFEPLFFEDVMNVIEQEKPIGVIVQFGGQTA 647

Query: 68  V--QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHL 123
           +   A L    +    + + +   + D+ + +Q++S   +       V        +   
Sbjct: 648 INLAAPLSAAGVNILGTSLESIDEAEDRKKFEQLLSRLAIAQPKGNTVTSVDEAVGTAQA 707

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           +  P +++P        + ++  D  +   + ++   N    +LI++Y+ G E+    + 
Sbjct: 708 LGYPVLVRPSYVLGGRAMEIVYSDTELLRYMEEAVKINPEHPVLIDRYMLGKEVEVDAIC 767

Query: 184 DAS---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIG 239
           D     +      V ++  +S        +S  V P + +  ++ K+V  +     + + 
Sbjct: 768 DGETVLVPGIMEHVERAGVHS-------GDSIAVYPPQHLSDELKKKVVDITISIAKELK 820

Query: 240 CRGISRSDFLFDPLSRKVFWLEINV 264
             G+    F+      +V+ +E+N 
Sbjct: 821 TIGLVNIQFVIHQ--DEVYVIEVNP 843


>gi|258646722|ref|ZP_05734191.1| pyruvate carboxylase [Dialister invisus DSM 15470]
 gi|260404151|gb|EEW97698.1| pyruvate carboxylase [Dialister invisus DSM 15470]
          Length = 1142

 Score = 80.2 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 44/275 (16%), Positives = 95/275 (34%), Gaps = 21/275 (7%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59
           +AV     S E  +SL   +A  + L   G K     +D   +  +      D      +
Sbjct: 31  VAV----YSKEDVLSLHRNRADEAYLVGEGDKPIDAYLDIEDIIRICKEHHVDAVHPG-Y 85

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI--LVNRFT 117
           G   E+  +    E   I +    +    +  DK+ ++       +P+ P     V  F 
Sbjct: 86  GFLAENAELAKRCEEEGIIFIGPRVEHLIMFGDKVNARIQAEKAQIPMIPGTNGAVESFD 145

Query: 118 M--DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQLLIEQY 171
                      P +IK + GG   G+  + + + +     ++ S        D++ +E+ 
Sbjct: 146 EVKAFAEEYGFPVMIKAVNGGGGRGMRNVDRMEDLEEAYHRAKSEAKMAFGSDEVYVEKC 205

Query: 172 V-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQR 229
           + +   +   ++GD +  V  +            K        + PA  +P  + +++  
Sbjct: 206 IMNPKHIEVQILGDEAGHVIHLFERDCSIQRRHQK-----VIEMAPAWSLPQKLREDICS 260

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            A    + +        +FL D      +++E+N 
Sbjct: 261 AAVKLMKNVNYLNAGTVEFLVDQDEEHFYFIEVNP 295


>gi|254700431|ref|ZP_05162259.1| pyruvate carboxylase [Brucella suis bv. 5 str. 513]
 gi|261750930|ref|ZP_05994639.1| pyruvate carboxylase [Brucella suis bv. 5 str. 513]
 gi|261740683|gb|EEY28609.1| pyruvate carboxylase [Brucella suis bv. 5 str. 513]
          Length = 1158

 Score = 80.2 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 33/199 (16%), Positives = 68/199 (34%), Gaps = 15/199 (7%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIK 131
            I +            +K+ ++ +    GVPV P+       MD        I  P ++K
Sbjct: 112 GIVFIGPKPETMRRLGNKVAARNLAIEIGVPVVPATDPLPDDMDEVKKLAAQIGYPLMLK 171

Query: 132 PLKGGSSLGIIVIKKDQSIP----LDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDAS 186
              GG   G+  I+ +  +         ++ +    D++ +E+ V+    +   ++GD  
Sbjct: 172 ASWGGGGRGMRAIRAEADLAREVMEAKREAKAAFGKDEVYLEKLVERARHVEVQILGDTY 231

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISR 245
            +   +            K          PA  +     +E+         A    G   
Sbjct: 232 GNAVHLFERDCSIQRRNQK-----VVERAPAPYLNDAQRRELADYGLKIAHATDYIGAGT 286

Query: 246 SDFLFDPLSRKVFWLEINV 264
            +FL D  + K +++E+N 
Sbjct: 287 VEFLMDADTGKFYFIEVNP 305


>gi|254441022|ref|ZP_05054515.1| pyruvate carboxylase [Octadecabacter antarcticus 307]
 gi|198251100|gb|EDY75415.1| pyruvate carboxylase [Octadecabacter antarcticus 307]
          Length = 1147

 Score = 80.2 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 77/221 (34%), Gaps = 18/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+           I +            DK  +++V    GVPV P+  V
Sbjct: 80  AIHPGYGLLSENPDFVDACAANNIKFIGPRAETMRQLGDKASARRVAMDAGVPVIPATEV 139

Query: 114 NRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ----SSSWNHGDQ 165
               M +       +  P ++K   GG   G+  I  +  +   +L+    + +     +
Sbjct: 140 LGDDMAAIKKEAAAVGYPLMLKASWGGGGRGMRAIMSEDELEEKVLEGRREAEAAFGNSE 199

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
             +E+ +     +   ++GD     +  A+         ++  +       PA  +    
Sbjct: 200 GYLEKMIMRARHVEVQILGD-----SHDAIYHLWERDCSVQRRNQKVVERAPAPYLSGTQ 254

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +++  L     + +        +FL D  S + F++E+N 
Sbjct: 255 REQICALGKKICEHVNYECAGTVEFLMDMDSGEFFFIEVNP 295


>gi|322418918|ref|YP_004198141.1| acetyl-CoA carboxylase, biotin carboxylase [Geobacter sp. M18]
 gi|320125305|gb|ADW12865.1| acetyl-CoA carboxylase, biotin carboxylase [Geobacter sp. M18]
          Length = 446

 Score = 80.2 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 82/220 (37%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+ +   I E   I +      +  +  DK+ ++Q V   GVP+ P    
Sbjct: 77  AIHPGYGFLSENPIFAEICEKCGITFIGPSAESMRIMGDKISARQAVIKVGVPILPGTKE 136

Query: 114 NRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
               ++        I  P +IK   GG   G+ ++    ++P     + +         +
Sbjct: 137 GVHDVNQAVKVAKEIGFPVIIKATAGGGGRGMKIVHSPAALPNAFATARAEAQSGFGNPE 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+Y +    +   ++ D   +V  +            K      + V       ++ 
Sbjct: 197 VYIERYCENPRHVEIQILADKHGNVVHLGERDCSIQRRHQKVIEEAPSTVT----TPELR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K +   A  A +A+    +   +FL D  + + +++E+N 
Sbjct: 253 KAMGEAAVAAAKAVNYSSVGTMEFLVDK-NNQFYFMEMNT 291


>gi|94266401|ref|ZP_01290098.1| Carbamoyl-phosphate synthase, large subunit, glutamine-dependent
           [delta proteobacterium MLMS-1]
 gi|94268346|ref|ZP_01291150.1| Carbamoyl-phosphate synthase, large subunit, glutamine-dependent
           [delta proteobacterium MLMS-1]
 gi|93451648|gb|EAT02437.1| Carbamoyl-phosphate synthase, large subunit, glutamine-dependent
           [delta proteobacterium MLMS-1]
 gi|93452996|gb|EAT03490.1| Carbamoyl-phosphate synthase, large subunit, glutamine-dependent
           [delta proteobacterium MLMS-1]
          Length = 1077

 Score = 80.2 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 49/278 (17%), Positives = 101/278 (36%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G++V  I         D +              V  V+   +PD    
Sbjct: 29  SGTQAVKALKEEGYQVVLINSNPATIMTDPEIADATYIEPITPEFVAKVIEKERPDALLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G  G +  +Q     ILE   +    + I     +  +   ++ +   G+ V  S +
Sbjct: 89  TLGGQTGLNTAIQVAEMGILEEYGVELLAARIDVIRKAEGRDSFREAMRKIGIKVPQSEI 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           ++       +   I  P +++P       G  +    Q +    +     +   ++++E+
Sbjct: 149 IHTLSEAKAAAAEIGFPIIVRPSYTLGGTGGGIAYNQQELEKLCITGLDLSLNSEVMLEK 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            + G  E    VM D   +V  I   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SLLGWKEYELEVMRDNKDNVVIICSIEN----FDPMGVHTGDSITVAPAQTLTDREYQAM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P   ++  +E+N 
Sbjct: 265 RDASLAIMREIGVETGGSNVQFAVNPADGELMVIEMNP 302



 Score = 55.5 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 33/225 (14%), Positives = 82/225 (36%), Gaps = 14/225 (6%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQHLISPPYV 129
           L    +P   +   +   + D+ R +Q +    +    + L       +     I  P V
Sbjct: 654 LARAGVPILGTTPDSIDRAEDRQRFQQFLQKLNLLQPANGLARSGDEALAVAKEIGYPVV 713

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  ++ +   +  +   +    +LI++++ D +E+    + D    
Sbjct: 714 VRPSYVLGGRAMRIVYNERDLNQYMTFAVEASPEHPVLIDKFLKDAVEVDVDAISDGDSA 773

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           +    +   +    E    S +S  VLP   +   + +E++       + +  +G+    
Sbjct: 774 IIGGIMQHIE----EAGIHSGDSACVLPPHTLEPAMIEEIKEATRAMAKELRVKGLMNVQ 829

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           F      R +F LE+N +   T     P ++   G    +L   +
Sbjct: 830 FAV--QDRTLFVLEVNPRASRT----VPFVSKATGVPLAKLATRV 868


>gi|28572792|ref|NP_789572.1| pyruvate carboxylase [Tropheryma whipplei TW08/27]
 gi|28410925|emb|CAD67310.1| pyruvate carboxylase [Tropheryma whipplei TW08/27]
          Length = 1131

 Score = 80.2 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 78/220 (35%), Gaps = 18/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E  L+    E   I +          + DK+ +K +  + G+P   S   
Sbjct: 78  AIHPGYGFLSESYLLADEAEKNGITFIGPPKDVLKSAGDKVLAKHMAQAAGLPTLRSSTA 137

Query: 114 NRFTMD---SQHLISPPYVIKPLKGGSSLGIIVIKKD----QSIPLDLLQSSSWNHGDQL 166
           +    +      L   P  +K   GG   G+ +++       S+   + ++++     ++
Sbjct: 138 SSNYDELLREAELFEYPIFVKAASGGGGRGMRIVENRTALKNSLESAIQEAAASFGDPRV 197

Query: 167 LIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIY 224
            +E  +D    +   V+ D   ++              L+        + PA  IP  + 
Sbjct: 198 FLETALDKPRHIEVQVLADKFGNIV-----HLFERDCSLQRRHQKVIEIAPAPNIPELLR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             + R A    +++        +FL D      +++E+N 
Sbjct: 253 TTLYRDAIAFAKSVKYENAGTVEFLVDSKMNH-YFIEMNP 291


>gi|28493597|ref|NP_787758.1| pyruvate carboxylase [Tropheryma whipplei str. Twist]
 gi|28476639|gb|AAO44727.1| pyruvate carboxylase [Tropheryma whipplei str. Twist]
          Length = 1131

 Score = 80.2 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 78/220 (35%), Gaps = 18/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E  L+    E   I +          + DK+ +K +  + G+P   S   
Sbjct: 78  AIHPGYGFLSESYLLADEAEKNGITFIGPPKDVLKSAGDKVLAKHMAQAAGLPTLRSSTA 137

Query: 114 NRFTMD---SQHLISPPYVIKPLKGGSSLGIIVIKKD----QSIPLDLLQSSSWNHGDQL 166
           +    +      L   P  +K   GG   G+ +++       S+   + ++++     ++
Sbjct: 138 SSNYDELLREAELFEYPIFVKAASGGGGRGMRIVENRTALKNSLESAIQEAAASFGDPRV 197

Query: 167 LIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIY 224
            +E  +D    +   V+ D   ++              L+        + PA  IP  + 
Sbjct: 198 FLETALDKPRHIEVQVLADKFGNIV-----HLFERDCSLQRRHQKVIEIAPAPNIPELLR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             + R A    +++        +FL D      +++E+N 
Sbjct: 253 TTLYRDAIAFAKSVKYENAGTVEFLVDSKMNH-YFIEMNP 291


>gi|294784769|ref|ZP_06750057.1| conserved hypothetical protein [Fusobacterium sp. 3_1_27]
 gi|294486483|gb|EFG33845.1| conserved hypothetical protein [Fusobacterium sp. 3_1_27]
          Length = 312

 Score = 80.2 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 53/292 (18%), Positives = 104/292 (35%), Gaps = 51/292 (17%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV----------DRSVGLVLAHLK 50
           +AV+ G           SG+     L+  G+K   I            D+S+ + L   +
Sbjct: 7   IAVIAG----------ISGEVIVKELKKLGYKAFVISGRKEDSGMNISDKSLVVDLREKE 56

Query: 51  ---PDLAFNVLHGNFGEDGLVQA--ILELL---EIPYTHSGILASALSMDKMRSKQVVSS 102
               +L  N +       G V A  +++ L    I        +S ++ DK   K+ +  
Sbjct: 57  LIYNELVKNEIDKVILGTGHVLAFKLIDFLAGKGIK-VSVNPKSSLIAKDKFAYKEELVK 115

Query: 103 CGVPVCPSILVNRFT----MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQ-SIPLDLLQS 157
            G+     I+++        +    I  P V+K     S++     KK      L+    
Sbjct: 116 NGILTPKYIVIDLDDKYNIQEILDKIGCPCVVK-----STIDTTYPKKANTKEELEKHID 170

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK----YSSLNSTH 213
           +       +++EQ+++GI+ T  V  +           K+   SY  K            
Sbjct: 171 TIRKTNSSIVVEQFIEGIDTTVPVYSNPK-------ETKAILVSYYSKADACKLEGFGND 223

Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           ++  K+  ++ + + R +    +     G++R D + D    K + LE N  
Sbjct: 224 LIKEKLSKEVEERLLRFSEDVIRKTNIIGMARLDIIVDK-DEKFYVLECNSV 274


>gi|126735356|ref|ZP_01751102.1| pyruvate carboxylase [Roseobacter sp. CCS2]
 gi|126715911|gb|EBA12776.1| pyruvate carboxylase [Roseobacter sp. CCS2]
          Length = 1147

 Score = 80.2 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 79/221 (35%), Gaps = 18/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+           I +            DK  +++V    GVPV P+  V
Sbjct: 80  AIHPGYGLLSENPDFVDACAANGITFIGPKAETMRALGDKASARRVAIEAGVPVIPATEV 139

Query: 114 NRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-----SSSWNHGD 164
               M +       +  P ++K   GG   G+  I  +  +   +L+      +++ +G+
Sbjct: 140 LGDDMKAIKKEAAEVGYPLMLKASWGGGGRGMRPIMSEDELEEKVLEGRREAEAAFGNGE 199

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
             L +  +    +   ++GD+   +  +           ++  +       PA  +    
Sbjct: 200 GYLEKMIMRARHVEVQILGDSHGQIYHLWE-----RDCSVQRRNQKVVERAPAPYLSGTQ 254

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +++  L     Q +        +FL D  S + +++E+N 
Sbjct: 255 REQLCNLGKKICQHVNYECAGTVEFLMDMDSGEFYFIEVNP 295


>gi|302333280|gb|ADL23473.1| acetyl-CoA carboxylase biotin carboxylase subunit, AccC_1
           [Staphylococcus aureus subsp. aureus JKD6159]
          Length = 453

 Score = 80.2 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 41/220 (18%), Positives = 79/220 (35%), Gaps = 18/220 (8%)

Query: 56  NVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
           N +H  +G   E       +E   I +         +  DK+ ++Q V   GVPV P   
Sbjct: 75  NAIHPGYGFLSESTKFAQTVEEQGIAFIGPTKKTMEMMGDKITARQTVHHAGVPVIPGSN 134

Query: 111 --ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS----WNHGD 164
             +            I  P VIK   GG   GI ++KK + +     ++ S    +   D
Sbjct: 135 GAVNHVSEIEKLAKDIGYPVVIKAASGGGGKGIRIVKKAEDLEKAFKEAKSEGKKYFDDD 194

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           ++ +E ++     +   VMGD   +   +            + +         A +  + 
Sbjct: 195 RVYVEAFIPVAKHVEVQVMGDGQDNYVHLGERDCSV----QRKNQKLIEESPCAALTEER 250

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            +++   A    +A   R     +FL    +   +++E+N
Sbjct: 251 RQQICNDAVKVARAANYRSAGTIEFLVTDTAH--YFIEMN 288


>gi|138894614|ref|YP_001125067.1| pyruvate carboxylase [Geobacillus thermodenitrificans NG80-2]
 gi|196247777|ref|ZP_03146479.1| pyruvate carboxylase [Geobacillus sp. G11MC16]
 gi|134266127|gb|ABO66322.1| Pyruvate carboxylase [Geobacillus thermodenitrificans NG80-2]
 gi|196212561|gb|EDY07318.1| pyruvate carboxylase [Geobacillus sp. G11MC16]
          Length = 1147

 Score = 80.2 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 28/221 (12%), Positives = 78/221 (35%), Gaps = 20/221 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+           I +         +  DK++++    + G+PV P    
Sbjct: 82  AIHPGYGFLSENIQFAKRCREEGIIFIGPNENHLDMFGDKVKARHAAVNAGIPVIPGSDG 141

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
            +      +        P +IK   GG   G+ +++    +         ++ +    D+
Sbjct: 142 PVDGLEDVVRFAEAHGYPIIIKAALGGGGRGMRIVRSKSEVKEAFERAKSEAKAAFGSDE 201

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDI 223
           + +E+ ++    +   ++GD   ++  +           ++        V P   +  ++
Sbjct: 202 VYVEKLIENPKHIEVQILGDYEGNIVHLYE-----RDCSVQRRHQKVVEVAPSVSLSDEL 256

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +   A    +++G       +FL      + +++E+N 
Sbjct: 257 RQRICEAAVQLMRSVGYVNAGTVEFLV--SGDEFYFIEVNP 295


>gi|154686270|ref|YP_001421431.1| acetyl-CoA carboxylase biotin carboxylase subunit [Bacillus
           amyloliquefaciens FZB42]
 gi|42491131|emb|CAE11268.1| YngH protein [Bacillus amyloliquefaciens FZB42]
 gi|154352121|gb|ABS74200.1| YngH [Bacillus amyloliquefaciens FZB42]
          Length = 449

 Score = 80.2 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 30/221 (13%), Positives = 83/221 (37%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+ L        +I +        A    K+ +++ +    VP+ P +  
Sbjct: 77  AIHPGYGLLSENSLFAERCRKEQITFIGPPGDIIAKMGSKIEARKTMQKAKVPIVPGVSE 136

Query: 114 N----RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
                   +     I  P ++K   GG  +G+ ++  ++ +         +++S+     
Sbjct: 137 PLPDVHSALAEARAIGFPVMLKASAGGGGIGMQIVHSEEELAKAFEGNQKRAASFFGDGA 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           + +E+ ++    +   ++ D     +             ++          P+  +  ++
Sbjct: 197 MYMEKVIENARHIEIQILAD-----SFGNTVHLFERDCSVQRRHQKVIEEAPSPFVDDEL 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +   A  A ++IG +     +FL D   +++++LE+N 
Sbjct: 252 RQRLGETAIKAAKSIGYQNAGTIEFLVDEK-KQIYFLEMNT 291


>gi|241554287|ref|YP_002979500.1| Carbamoyl-phosphate synthase L chain ATP-binding [Rhizobium
           leguminosarum bv. trifolii WSM1325]
 gi|240863593|gb|ACS61255.1| Carbamoyl-phosphate synthase L chain ATP-binding [Rhizobium
           leguminosarum bv. trifolii WSM1325]
          Length = 621

 Score = 79.8 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 40/225 (17%), Positives = 84/225 (37%), Gaps = 22/225 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      +E   I +  +   A      K  +K+++ + GVPV P  + 
Sbjct: 77  AIHPGYGFLSENAGFAEAVEKAGIIWVGAPPAAIRAMGLKDAAKELMQAAGVPVTPGYIG 136

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
              + +       +I  P +IK + GG   G+  + + Q     L     ++++    D+
Sbjct: 137 ADQSEERLTAEADIIGYPVLIKAVAGGGGKGMRRVDRPQDFAELLASCRREAAAAFGDDR 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           +LIE+Y+ +   +   V  D   +               L+          PA  +    
Sbjct: 197 VLIERYIANPRHIEVQVFADKLGNCV-----HLFERDCSLQRRHQKVIEEAPAPGLDAAT 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR----KVFWLEINV 264
              +   A  A +A+   G    +F+ D        +++++E+N 
Sbjct: 252 RAVICDAAVKAARAVNYVGAGTIEFIADASEGLREDRIWFMEMNT 296


>gi|329925226|ref|ZP_08280169.1| ATP-grasp domain protein [Paenibacillus sp. HGF5]
 gi|328940059|gb|EGG36392.1| ATP-grasp domain protein [Paenibacillus sp. HGF5]
          Length = 391

 Score = 79.8 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 42/223 (18%), Positives = 91/223 (40%), Gaps = 20/223 (8%)

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGS 137
           +     ++ LS +K + KQ     GV     + V   +    +  ++SPP + K + GG+
Sbjct: 90  SGLSYESALLSSNKWKMKQAFMKHGVRTARFLKVQTLQEAYSAFEVLSPPVIFKAVDGGA 149

Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDVTEIAVP 195
           S GI+ +     +             D  ++E++++G E      V  +      +  +P
Sbjct: 150 SKGIVKVADMAHVEYAFETVRKDTKLDFFIVEEFIEGTEFGAQAFVYDNQ----IQFIMP 205

Query: 196 KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS-RSDFLFDPLS 254
             DF  Y      +   H +P ++P ++ +++      + +A+     +  +DF+     
Sbjct: 206 HGDFVFYGDTGVPIG--HYVPYELPEEVQQDLFSQLKQSIEALELNHCAINADFIL--KD 261

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAY-AGYSFRELLLWMVEDA 296
             V+ LEI  + G T     PE+ +   G+ +      +++ A
Sbjct: 262 GHVYVLEIGGRAGAT---CLPELVSTFYGFDY---YEQIIKAA 298


>gi|298694886|gb|ADI98108.1| acetyl-CoA biotin carboxylase [Staphylococcus aureus subsp. aureus
           ED133]
          Length = 453

 Score = 79.8 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 41/220 (18%), Positives = 79/220 (35%), Gaps = 18/220 (8%)

Query: 56  NVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
           N +H  +G   E       +E   I +         +  DK+ ++Q V   GVPV P   
Sbjct: 75  NAIHPGYGFLSESTKFAQTVEEQGIAFIGPTKKTMEMMGDKITARQTVHHAGVPVIPGSN 134

Query: 111 --ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS----WNHGD 164
             +            I  P VIK   GG   GI ++KK + +     ++ S    +   D
Sbjct: 135 GAVNHVSEIEKLAKDIGYPVVIKAASGGGGKGIRIVKKAEDLEKAFKEAKSEGKKYFDDD 194

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           ++ +E ++     +   VMGD   +   +            + +         A +  + 
Sbjct: 195 RVYVEAFIPVAKHVEVQVMGDGQDNYVHLGERDCSV----QRKNQKLIEESPCAALTEER 250

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            +++   A    +A   R     +FL    +   +++E+N
Sbjct: 251 RQQICNDAVKVARAANYRSAGTIEFLVTDTAH--YFIEMN 288


>gi|282916875|ref|ZP_06324633.1| accC; acetyl-CoA biotin carboxylase [Staphylococcus aureus subsp.
           aureus D139]
 gi|283770680|ref|ZP_06343572.1| accC acetyl-CoA biotin carboxylase [Staphylococcus aureus subsp.
           aureus H19]
 gi|282319362|gb|EFB49714.1| accC; acetyl-CoA biotin carboxylase [Staphylococcus aureus subsp.
           aureus D139]
 gi|283460827|gb|EFC07917.1| accC acetyl-CoA biotin carboxylase [Staphylococcus aureus subsp.
           aureus H19]
          Length = 453

 Score = 79.8 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 41/220 (18%), Positives = 79/220 (35%), Gaps = 18/220 (8%)

Query: 56  NVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
           N +H  +G   E       +E   I +         +  DK+ ++Q V   GVPV P   
Sbjct: 75  NAIHPGYGFLSESTKFAQTVEEQGIAFIGPTKKTMEMMGDKITARQTVHHAGVPVIPGSN 134

Query: 111 --ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS----WNHGD 164
             +            I  P VIK   GG   GI ++KK + +     ++ S    +   D
Sbjct: 135 GAVNHVSEIEKLAKDIGYPVVIKAASGGGGKGIRIVKKAEDLEKAFKEAKSEGKKYFDDD 194

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           ++ +E ++     +   VMGD   +   +            + +         A +  + 
Sbjct: 195 RVYVEAFIPVAKHVEVQVMGDGQDNYVHLGERDCSV----QRKNQKLIEESPCAALTEER 250

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            +++   A    +A   R     +FL    +   +++E+N
Sbjct: 251 RQQICNDAVKVARAANYRSAGTIEFLVTDTAH--YFIEMN 288


>gi|225027953|ref|ZP_03717145.1| hypothetical protein EUBHAL_02213 [Eubacterium hallii DSM 3353]
 gi|224954667|gb|EEG35876.1| hypothetical protein EUBHAL_02213 [Eubacterium hallii DSM 3353]
          Length = 454

 Score = 79.8 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 84/222 (37%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  FG   E+     + E   I +        A   +K  ++Q +   GVPV P    
Sbjct: 77  AIHPGFGFLSENSQFAKLCEACHITFIGPDSDIIARLGNKAVARQTMVDAGVPVIPGCQK 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS-----SSWNHGD 164
            +   +  ++    I  P ++K + GG   G+ V   +       L +      ++   +
Sbjct: 137 ALTDVKEALEIAKGIGFPVIVKAVLGGGGKGMRVAYNEDEFENAFLMAQKESGLAFG-DE 195

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLD 222
            + +E +V+    +   ++ D   +V              ++ +        P A +  +
Sbjct: 196 SMYLEHFVENPRHIEFQILADNYGNVI-----HLGERDCSVQRNHQKVIEESPSAVVDEE 250

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +++ + A LA +A G +     +FL     +  +++E+N 
Sbjct: 251 LREKMGQAAVLAAKAAGYKNAGTIEFLL-EKDKSFYFMEMNT 291


>gi|149639224|ref|XP_001505307.1| PREDICTED: similar to 3-methylcrotonyl-CoA carboxylase
           biotin-containing subunit [Ornithorhynchus anatinus]
          Length = 696

 Score = 79.8 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 82/221 (37%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H  +G   E+     + +   I +      A      K  SK ++S+ GVP+      
Sbjct: 97  AIHPGYGFLSENTEFAELCKREGIIFIGPPSSAIRDMGIKSTSKAIMSAAGVPIVEGYHG 156

Query: 113 ---VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
               +R   ++   I  P +IK ++GG   G+ + K ++     L  +          D 
Sbjct: 157 EDQSDRCLKENAGRIGYPVMIKAVRGGGGKGMRIAKSEKEFQEQLESARREAKKSFDDDS 216

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDI 223
           +LIE++VD    +   V GD   +   +           ++          P   I  ++
Sbjct: 217 MLIEKFVDTPRHIEVQVFGDQYGNAVYL-----FERDCSVQRRHQKIIEEAPGPGIEPEV 271

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            K +   A  A +A+   G    +F+ D      +++E+N 
Sbjct: 272 RKRLGEAAVKAAKAVNYVGAGTVEFIMDSKHN-FYFMEMNT 311


>gi|331012555|gb|EGH92611.1| acetyl-CoA carboxylase biotin carboxylase subunit [Pseudomonas
           syringae pv. tabaci ATCC 11528]
          Length = 400

 Score = 79.8 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 76/222 (34%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         L  DK+ +K  +    VP  P    
Sbjct: 30  AIHPGYGFLAENADFAEQVEKSGFAFIGPKADTIRLMGDKVSAKDAMKLANVPTVPGSDG 89

Query: 112 LVNRFTMDSQHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
            +      +  +   +  P +IK   GG   G+ V+ +++ +         ++++W    
Sbjct: 90  PLPEDEATALRIGREVGYPVIIKAAGGGGGRGMRVVHREEDLIEAASQTRAEAAAWFSNP 149

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+Y+     +   V+ D                   L+          PA  I   
Sbjct: 150 MVYLEKYLTNPRHVEVQVISDGQGQAI-----HLGDRDCSLQRRHQKVLEEAPAPFIDEQ 204

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              +V      A   IG RG    +FL+   + + +++E+N 
Sbjct: 205 ARADVLAACVKACIDIGYRGAGTFEFLY--ENGRFYFIEMNT 244


>gi|242556615|pdb|3HB9|A Chain A, Crystal Structure Of S. Aureus Pyruvate Carboxylase A610t
           Mutant
 gi|242556616|pdb|3HB9|B Chain B, Crystal Structure Of S. Aureus Pyruvate Carboxylase A610t
           Mutant
 gi|242556617|pdb|3HB9|C Chain C, Crystal Structure Of S. Aureus Pyruvate Carboxylase A610t
           Mutant
 gi|242556618|pdb|3HB9|D Chain D, Crystal Structure Of S. Aureus Pyruvate Carboxylase A610t
           Mutant
          Length = 1150

 Score = 79.8 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 33/221 (14%), Positives = 75/221 (33%), Gaps = 20/221 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+           I +    +    +  DK++++       +PV P    
Sbjct: 80  AIHPGYGFLSENEQFARRCAEEGIKFIGPHLEHLDMFGDKVKARTTAIKADLPVIPGTDG 139

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
            I       +       P +IK   GG   G+ +++++  +     ++ S         +
Sbjct: 140 PIKSYELAKEFAEEAGFPLMIKATSGGGGKGMRIVREESELEDAFHRAKSEAEKSFGNSE 199

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDI 223
           + IE+Y+D    +   V+GD   ++              ++        V P   +   +
Sbjct: 200 VYIERYIDNPKHIEVQVIGDEHGNIV-----HLFERDCSVQRRHQKVVEVAPSVGLSPTL 254

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +   A    + I        +FL      + F++E+N 
Sbjct: 255 RQRICDAAIQLMENIKYVNAGTVEFLV--SGDEFFFIEVNP 293


>gi|307545524|ref|YP_003898003.1| methylcrotonoyl-CoA carboxylase, biotin carboxylase subunit
           [Halomonas elongata DSM 2581]
 gi|307217548|emb|CBV42818.1| Methylcrotonoyl-CoA carboxylase, biotin carboxylase subunit
           [Halomonas elongata DSM 2581]
          Length = 678

 Score = 79.8 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 45/216 (20%), Positives = 81/216 (37%), Gaps = 16/216 (7%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
           +G   E+G   A L   +I +      A A   DK  +K  +   GVP+ P    +    
Sbjct: 85  YGFLSENGDFVAALAEADITFVGPPASAIAAMGDKSAAKARMHDAGVPLVPGYHGDDQDD 144

Query: 119 ----DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQLLIEQ 170
                    I  P ++K   GG   G+ V++  ++    L     +S +    D++LIE+
Sbjct: 145 ALLKAEADRIGYPVLLKASAGGGGKGMRVVESAEAFQAALDGCRRESRAAFGDDRMLIEK 204

Query: 171 YVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQ 228
           Y+     +   V  D+  +   +           ++          PA  +   + +E+ 
Sbjct: 205 YLTQPRHVEVQVFCDSQGNGVYL-----FERDCSVQRRHQKVLEEAPAPGMTEALRREMG 259

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             A  A + IG  G    +FL D      F++E+N 
Sbjct: 260 EAAVRAAREIGYVGAGTVEFLLDA-DHSFFFMEMNT 294


>gi|227545512|ref|ZP_03975561.1| phosphoribosylaminoimidazole carboxylase [Lactobacillus reuteri
           CF48-3A]
 gi|300908920|ref|ZP_07126383.1| phosphoribosylaminoimidazole carboxylase ATPase subunit PurK
           [Lactobacillus reuteri SD2112]
 gi|227184509|gb|EEI64580.1| phosphoribosylaminoimidazole carboxylase [Lactobacillus reuteri
           CF48-3A]
 gi|300894327|gb|EFK87685.1| phosphoribosylaminoimidazole carboxylase ATPase subunit PurK
           [Lactobacillus reuteri SD2112]
          Length = 384

 Score = 79.8 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 42/206 (20%), Positives = 85/206 (41%), Gaps = 13/206 (6%)

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQ 121
           E+  + A+ ++ +  Y   G      + +++R K  +   GV   P + V+      D+ 
Sbjct: 88  ENVDLNALEDVQDRVYLPQGTNLLYTTKNRLREKNFLRQAGVKTAPFMAVHTSAELKDAV 147

Query: 122 HLISPPYVIKPLKGG-SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
             I  P V+K  +GG    G  V++    +      +S    GD +L        E +  
Sbjct: 148 KKIGYPAVLKTSEGGYDGHGQEVLRNKDDLD---KCASILATGDCILEGWVPFNRECSVM 204

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V  +   ++T   V ++  +   L  S      ++PA+I  ++ ++ Q++A    QAI  
Sbjct: 205 VGRNEDGEITAFPVSENIHHDEILHLS------IVPARISSELQQKAQKIAVQIAQAINL 258

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQP 266
           RGI   +        +++  E+  +P
Sbjct: 259 RGILGVEMFVT-DDGEIYINELAPRP 283


>gi|161619144|ref|YP_001593031.1| propionyl-coenzyme A carboxylase, alpha polypeptide [Brucella canis
           ATCC 23365]
 gi|161335955|gb|ABX62260.1| propionyl-coenzyme A carboxylase, alpha polypeptide [Brucella canis
           ATCC 23365]
          Length = 667

 Score = 79.8 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 44/240 (18%), Positives = 84/240 (35%), Gaps = 16/240 (6%)

Query: 34  SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDK 93
           S I +D+ +   +     D      +G   E+      L+   + +    + A     DK
Sbjct: 59  SYIVIDK-ILAAIKETGADAVHPG-YGFLSENPRFAEALKAANVTFIGPPVNAIDAMGDK 116

Query: 94  MRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQS 149
           + SK++ +  GV   P  +      D        I  P +IK   GG   G+ +   D+ 
Sbjct: 117 ITSKKLAAEAGVSTVPGHMGLIEDADEAVRIAGSIGYPVMIKASAGGGGKGMRIAWNDEE 176

Query: 150 ----IPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYEL 204
                 L   ++ S    D++ IE++V     +   V+GD   +V  +   +        
Sbjct: 177 AREGFQLSRNEAKSSFGDDRIFIEKFVTQPRHIEIQVLGDQHGNVVYLGERECSIQRRNQ 236

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K             +     K +   A    +A+G       +F+    +R  ++LE+N 
Sbjct: 237 K----VIEEAPSPFLDEATRKAMGEQAVALAKAVGYYSAGTVEFIV-YGNRNFYFLEMNT 291


>gi|21283285|ref|NP_646373.1| hypothetical protein MW1556 [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49486439|ref|YP_043660.1| putative biotin carboxylase subunit of acetyl-CoA carboxylase
           [Staphylococcus aureus subsp. aureus MSSA476]
 gi|297207674|ref|ZP_06924109.1| acetyl-CoA carboxylase subunit A [Staphylococcus aureus subsp.
           aureus ATCC 51811]
 gi|300911756|ref|ZP_07129199.1| acetyl-CoA carboxylase subunit A [Staphylococcus aureus subsp.
           aureus TCH70]
 gi|21204725|dbj|BAB95421.1| MW1556 [Staphylococcus aureus subsp. aureus MW2]
 gi|49244882|emb|CAG43343.1| putative biotin carboxylase subunit of acetyl-CoA carboxylase
           [Staphylococcus aureus subsp. aureus MSSA476]
 gi|296887691|gb|EFH26589.1| acetyl-CoA carboxylase subunit A [Staphylococcus aureus subsp.
           aureus ATCC 51811]
 gi|300886002|gb|EFK81204.1| acetyl-CoA carboxylase subunit A [Staphylococcus aureus subsp.
           aureus TCH70]
          Length = 453

 Score = 79.8 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 41/220 (18%), Positives = 79/220 (35%), Gaps = 18/220 (8%)

Query: 56  NVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
           N +H  +G   E       +E   I +         +  DK+ ++Q V   GVPV P   
Sbjct: 75  NAIHPGYGFLSESTKFAQTVEEQGIAFIGPTKKTMEMMGDKITARQTVHHAGVPVIPGSN 134

Query: 111 --ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS----WNHGD 164
             +            I  P VIK   GG   GI ++KK + +     ++ S    +   D
Sbjct: 135 GAVNHVSEIEKLAKDIGYPVVIKAASGGGGKGIRIVKKAEDLEKAFKEAKSEGKKYFDDD 194

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           ++ +E ++     +   VMGD   +   +            + +         A +  + 
Sbjct: 195 RVYVEAFIPVAKHVEVQVMGDGQDNFVHLGERDCSV----QRKNQKLIEESPCAALTEER 250

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            +++   A    +A   R     +FL    +   +++E+N
Sbjct: 251 RQQICNDAVKVARAANYRSAGTIEFLVTDTAH--YFIEMN 288


>gi|282928240|ref|ZP_06335845.1| accC; acetyl-CoA biotin carboxylase [Staphylococcus aureus A10102]
 gi|282590047|gb|EFB95129.1| accC; acetyl-CoA biotin carboxylase [Staphylococcus aureus A10102]
          Length = 453

 Score = 79.8 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 41/220 (18%), Positives = 80/220 (36%), Gaps = 18/220 (8%)

Query: 56  NVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
           N +H  +G   E       +E   I +         +  DK+ ++Q V   GVPV P   
Sbjct: 75  NAIHPGYGFLSESTKFAQTVEEQGIAFIGPTKKTIEMMGDKITARQTVHHAGVPVIPGSN 134

Query: 111 --ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS----WNHGD 164
             +       +    I  P VIK   GG   GI ++KK + +     ++ S    +   D
Sbjct: 135 GAVNHVSEIENLAKDIGYPVVIKAASGGGGKGIRIVKKAEDLEKAFKEAKSEGKKYFDDD 194

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           ++ +E ++     +   VMGD   +   +            + +         A +  + 
Sbjct: 195 RVYVEAFIPVAKHVEVQVMGDGQDNYVHLGERDCSV----QRKNQKLIEESPCAALTEER 250

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            +++   A    +A   R     +FL    +   +++E+N
Sbjct: 251 RQQICNDAVKVARAANYRSAGTIEFLVTDTAH--YFIEMN 288


>gi|298694347|gb|ADI97569.1| Pyruvate carboxyl transferase [Staphylococcus aureus subsp. aureus
           ED133]
          Length = 1150

 Score = 79.8 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 33/221 (14%), Positives = 75/221 (33%), Gaps = 20/221 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+           I +    +    +  DK++++       +PV P    
Sbjct: 80  AIHPGYGFLSENEQFARRCAEEGIKFIGPHLEHLDMFGDKVKARTTAIKADLPVIPGTDG 139

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
            I       +       P +IK   GG   G+ +++++  +     ++ S         +
Sbjct: 140 PIKSYELAKEFAEEAGFPLMIKATSGGGGKGMRIVREESELEDAFHRAKSEAEKSFGNSE 199

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDI 223
           + IE+Y+D    +   V+GD   ++              ++        V P   +   +
Sbjct: 200 VYIERYIDNPKHIEVQVIGDEHGNIV-----HLFERDCSVQRRHQKVVEVAPSVGLSPTL 254

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +   A    + I        +FL      + F++E+N 
Sbjct: 255 RQRICDAAIQLMENIKYVNAGTVEFLV--SGDEFFFIEVNP 293


>gi|294495299|ref|YP_003541792.1| pyruvate carboxylase subunit A [Methanohalophilus mahii DSM 5219]
 gi|292666298|gb|ADE36147.1| pyruvate carboxylase subunit A [Methanohalophilus mahii DSM 5219]
          Length = 498

 Score = 79.8 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 81/221 (36%), Gaps = 20/221 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+    +  E   I +             K+ ++  +   GVPV P    
Sbjct: 77  AIHPGYGFLSENAKFASACEKAGIIFIGPSSEVIEKMGSKITARSAMIEAGVPVVPGDGR 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGD 164
            I  +   ++    I  P ++K   GG  +G+ V+   + +   L     + +S++    
Sbjct: 137 AIEDDATAIEIGESIGYPLMVKASAGGGGIGMKVVYTPEELTRALSSIRNVAASTFG-DS 195

Query: 165 QLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            + IE+Y++    +   ++ D+  +   +   +        K             +  ++
Sbjct: 196 TVFIEKYLEEPRHIEIQILADSQGNCLYLGDRECSIQRRHQK----LIEEAPSPIMTPEL 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +++   A  A + IG       +FL+       ++LE+N 
Sbjct: 252 RRDMGEAAVKAAKKIGYVNAGTVEFLYSK--GDYYFLEVNT 290


>gi|218245501|ref|YP_002370872.1| carbamoyl phosphate synthase large subunit [Cyanothece sp. PCC
           8801]
 gi|218165979|gb|ACK64716.1| carbamoyl-phosphate synthase, large subunit [Cyanothece sp. PCC
           8801]
          Length = 1081

 Score = 79.8 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 54/283 (19%), Positives = 109/283 (38%), Gaps = 44/283 (15%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ + +                     V  V+A  +PD    
Sbjct: 29  SGTQACKALREEGYEVVLVNSNPASIMTDPEMANRTYIEPLTPDMVAKVIAKERPDALLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G    +  V      +L+   +    + + A   + D+   K+ ++  GVPVCPS  
Sbjct: 89  TMGGQTALNVAVALAKNGVLDEYNVELIGAKLPAIEKAEDRNLFKEAMAKIGVPVCPSGI 148

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG----DQ 165
              +    M ++ + S P +I+P       G  +    +       + + +        Q
Sbjct: 149 ANTLKEAQMIAEQIGSYPLIIRPAFTLGGTGGGIAYNQEEFE----EMAQFGIDSSPVSQ 204

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLD 222
           +L+E+ + G  E    VM D + +V  I   ++    ++       +S  V PA+ +   
Sbjct: 205 ILVEKSLLGWKEYELEVMRDLADNVVIICSIEN----FDPMGVHTGDSITVAPAQTLTDK 260

Query: 223 IYKEVQRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
            Y+ ++  +    + IG   G S   F  +P++  V  +E+N 
Sbjct: 261 EYQRLRDYSQAIIREIGVETGGSNIQFSVNPVNGDVIVIEMNP 303



 Score = 46.7 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 25/205 (12%), Positives = 74/205 (36%), Gaps = 13/205 (6%)

Query: 68  VQAILELLEIPYT----HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQ 121
           +Q  L+    P       +   +   + D+ R ++++    +    + +   +       
Sbjct: 653 LQTYLDSPNCPVQTKIWGTSPDSIDTAEDRERFEKILHDLEIKQPANGISRSYEESVAVA 712

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCG 180
             I  P V++P        + ++  D+ +   ++ +        +LI+++++  IE+   
Sbjct: 713 SRIGYPVVVRPSYVLGGRAMEIVYSDEELERYMIYAVQVEPDHPILIDKFLENAIEVDVD 772

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIG 239
            + D +  V    + +   +  +    S +S   LP   +   +   ++        ++ 
Sbjct: 773 ALCDMTGKVVIGGIME---HIEQAGVHSGDSACSLPFTTLSPHVINTIRNWTTHLANSLQ 829

Query: 240 CRGISRSDFLFDPLSRKVFWLEINV 264
             G+   +  +     +V+ LE N 
Sbjct: 830 VIGL--MNIQYAVQGEQVYILEANP 852


>gi|54297741|ref|YP_124110.1| hypothetical protein lpp1792 [Legionella pneumophila str. Paris]
 gi|53751526|emb|CAH12944.1| hypothetical protein lpp1792 [Legionella pneumophila str. Paris]
          Length = 654

 Score = 79.8 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 75/220 (34%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       E   I +    I A      K  +KQ++    VP+ P    
Sbjct: 77  AIHPGYGFLSENPDFAKACEQAGIVFIGPSIKAMEAMASKQLAKQLLEKTKVPLTPGYHG 136

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
              + +        I  P +IK   GG   G+  +  ++     L  +   +      D 
Sbjct: 137 GEQSEEKLLSEAKKIGFPVLIKAANGGGGKGMRAVHDEKEFHDALAGAKRESMASFADDT 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           ++IE+ V +   +   +M D   +V  +            K             +   + 
Sbjct: 197 MIIERLVLNPRHVEVQIMADNHGNVVHLFERDCSIQRRHQKII----EEAPAPNLSPVLR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +   A    ++I  RG    +FL D    K +++E+N 
Sbjct: 253 QRLAEAACEVARSINYRGAGTVEFLVDGED-KFYFMEMNT 291


>gi|23099340|ref|NP_692806.1| acetyl-CoA carboxylase biotin carboxylase subunit [Oceanobacillus
           iheyensis HTE831]
 gi|22777569|dbj|BAC13841.1| acetyl-CoA carboxylase biotin carboxylase subunit [Oceanobacillus
           iheyensis HTE831]
          Length = 455

 Score = 79.8 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 84/220 (38%), Gaps = 16/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     I     I +      A      K  +K+ + +  VPV P    
Sbjct: 77  AIHPGYGFLAENADFAEICRACNITFVGPTPKAIQQMGIKDVAKETMKNANVPVVPGSEG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
            +      ++  + I  P +IK   GG   GI V + ++ +   +     ++ +      
Sbjct: 137 IVDTTEDAIEVANSIGYPVIIKATAGGGGKGIRVARSEEELIKGMEITQKEAETAFGNPG 196

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E++++    +   ++ D   +V  +            K    + +   PA +   I 
Sbjct: 197 VYLEKFIEDFRHVEIQILADTHGNVIHLGERDCSIQRRLQKLIEESPS---PA-LNESIR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            ++   +  A +A+   G    +++FD  + + +++E+N 
Sbjct: 253 AKMGEASVKAAKAVEYVGAGTIEYIFDRKTNEFYFMEMNT 292


>gi|330953063|gb|EGH53323.1| acetyl-CoA carboxylase biotin carboxylase subunit [Pseudomonas
           syringae Cit 7]
          Length = 447

 Score = 79.8 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 77/222 (34%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         L  DK+ +K  +    VP  P    
Sbjct: 77  AIHPGYGFLAENADFAEQVEKSGFAFIGPKADTIRLMGDKVSAKDAMKLANVPTVPGSDG 136

Query: 112 LVNRFTMDSQHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
            +      +  +   +  P +IK   GG   G+ V+ +++ +         ++++W    
Sbjct: 137 PLPEDEATALRIGREVGYPVIIKAAGGGGGRGMRVVHREEDLIEAASQTRAEAAAWFSNP 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+Y+     +   V+ D                   L+          PA  I   
Sbjct: 197 MVYLEKYLTNPRHVEVQVISDGQGQAI-----HLGDRDCSLQRRHQKVLEEAPAPFIDEK 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             ++V      A   IG RG    +FL+   + + +++E+N 
Sbjct: 252 AREDVLAACVKACIDIGYRGAGTFEFLY--ENGRFYFIEMNT 291


>gi|224118754|ref|XP_002331438.1| predicted protein [Populus trichocarpa]
 gi|290463113|sp|B9N843|ACCC2_POPTR RecName: Full=Biotin carboxylase 2, chloroplastic; AltName:
           Full=Acetyl-CoA carboxylase subunit A 2; Short=ACC;
           Flags: Precursor
 gi|222873652|gb|EEF10783.1| predicted protein [Populus trichocarpa]
          Length = 526

 Score = 79.8 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 78/220 (35%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
           +LH  +G   E+ +   +     I +      +  +  DK  +++ +    VP  P    
Sbjct: 142 MLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRVMGDKSTARETMKKANVPTVPGSDG 201

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS----IPLDLLQSSSWNHGDQ 165
            +      +     I  P +IK   GG   G+ + K+       +     ++++    D 
Sbjct: 202 LLQSTEEAVKLASEIGYPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDG 261

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+YV +   +   V+ D   +V               K             +  ++ 
Sbjct: 262 VYLEKYVQNPRHIEFQVLADKFGNVVHFGERDCSIQRRNQKLL----EEAPSPALTPELR 317

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K +   A  A  +IG  G+   +FL D      +++E+N 
Sbjct: 318 KAMGDAAVAAAASIGYIGVGTVEFLLDER-GSFYFMEMNT 356


>gi|66047628|ref|YP_237469.1| acetyl-CoA carboxylase biotin carboxylase subunit [Pseudomonas
           syringae pv. syringae B728a]
 gi|63258335|gb|AAY39431.1| Acetyl-CoA carboxylase, biotin carboxylase [Pseudomonas syringae
           pv. syringae B728a]
 gi|330969394|gb|EGH69460.1| acetyl-CoA carboxylase biotin carboxylase subunit [Pseudomonas
           syringae pv. aceris str. M302273PT]
          Length = 447

 Score = 79.8 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 77/222 (34%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         L  DK+ +K  +    VP  P    
Sbjct: 77  AIHPGYGFLAENADFAEQVEKSGFAFIGPKADTIRLMGDKVSAKDAMKLANVPTVPGSDG 136

Query: 112 LVNRFTMDSQHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
            +      +  +   +  P +IK   GG   G+ V+ +++ +         ++++W    
Sbjct: 137 PLPEDEATALRIGREVGYPVIIKAAGGGGGRGMRVVHREEDLIEAASQTRAEAAAWFSNP 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+Y+     +   V+ D                   L+          PA  I   
Sbjct: 197 MVYLEKYLTNPRHVEVQVISDGQGQAI-----HLGDRDCSLQRRHQKVLEEAPAPFIDEK 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             ++V      A   IG RG    +FL+   + + +++E+N 
Sbjct: 252 AREDVLAACVKACIDIGYRGAGTFEFLY--ENGRFYFIEMNT 291


>gi|870726|gb|AAC41659.1| biotin carboxylase subunit [Nicotiana tabacum]
 gi|1582354|prf||2118337A Ac-CoA carboxylase:SUBUNIT=biotin carboxylase
          Length = 536

 Score = 79.8 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 78/220 (35%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
           +LH  +G   E+ +   +     I +      +  +  DK  ++  + + GVP  P    
Sbjct: 146 MLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRVMGDKSTARDTMKNAGVPTVPGSDG 205

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS----IPLDLLQSSSWNHGDQ 165
            +      +     I  P +IK   GG   G+ + K+       +     ++++    D 
Sbjct: 206 LLQSTEEGVRLAEEIGYPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDG 265

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+YV +   +   V+ D   +V               K             +  ++ 
Sbjct: 266 VYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLL----EEAPSPALTPELR 321

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +   A  A  +IG  G+   +FL D      +++E+N 
Sbjct: 322 NAMGDAAVAAAASIGYIGVGTVEFLLDER-GSFYFMEMNT 360


>gi|257058535|ref|YP_003136423.1| carbamoyl phosphate synthase large subunit [Cyanothece sp. PCC
           8802]
 gi|256588701|gb|ACU99587.1| carbamoyl-phosphate synthase, large subunit [Cyanothece sp. PCC
           8802]
          Length = 1081

 Score = 79.8 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 54/283 (19%), Positives = 109/283 (38%), Gaps = 44/283 (15%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ + +                     V  V+A  +PD    
Sbjct: 29  SGTQACKALREEGYEVVLVNSNPASIMTDPEMANRTYIEPLTPDMVAKVIAKERPDALLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G    +  V      +L+   +    + + A   + D+   K+ ++  GVPVCPS  
Sbjct: 89  TMGGQTALNVAVALAKNGVLDEYNVELIGAKLPAIEKAEDRNLFKEAMAKIGVPVCPSGI 148

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG----DQ 165
              +    M ++ + S P +I+P       G  +    +       + + +        Q
Sbjct: 149 ANTLKEAQMIAEQIGSYPLIIRPAFTLGGTGGGIAYNQEEFE----EMAQFGIDSSPVSQ 204

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLD 222
           +L+E+ + G  E    VM D + +V  I   ++    ++       +S  V PA+ +   
Sbjct: 205 ILVEKSLLGWKEYELEVMRDLADNVVIICSIEN----FDPMGVHTGDSITVAPAQTLTDK 260

Query: 223 IYKEVQRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
            Y+ ++  +    + IG   G S   F  +P++  V  +E+N 
Sbjct: 261 EYQRLRDYSQAIIREIGVETGGSNIQFSVNPVNGDVIVIEMNP 303



 Score = 46.7 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 25/205 (12%), Positives = 74/205 (36%), Gaps = 13/205 (6%)

Query: 68  VQAILELLEIPYT----HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQ 121
           +Q  L+    P       +   +   + D+ R ++++    +    + +   +       
Sbjct: 653 LQTYLDSPNCPVQTKIWGTSPDSIDTAEDRERFEKILHDLEIKQPANGISRSYEESVAVA 712

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCG 180
             I  P V++P        + ++  D+ +   ++ +        +LI+++++  IE+   
Sbjct: 713 SRIGYPVVVRPSYVLGGRAMEIVYSDEELERYMIYAVQVEPDHPILIDKFLENAIEVDVD 772

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIG 239
            + D +  V    + +   +  +    S +S   LP   +   +   ++        ++ 
Sbjct: 773 ALCDMTGKVVIGGIME---HIEQAGVHSGDSACSLPFTTLSPHVINTIRNWTTHLANSLQ 829

Query: 240 CRGISRSDFLFDPLSRKVFWLEINV 264
             G+   +  +     +V+ LE N 
Sbjct: 830 VIGL--MNIQYAVQGEQVYILEANP 852


>gi|261405317|ref|YP_003241558.1| phosphoribosylglycinamide synthetase, ATP-grasp (A)
           domain-containing protein [Paenibacillus sp. Y412MC10]
 gi|261281780|gb|ACX63751.1| Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain protein
           [Paenibacillus sp. Y412MC10]
          Length = 391

 Score = 79.8 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 92/223 (41%), Gaps = 20/223 (8%)

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGS 137
           +     ++ LS +K + KQ     GV     + V   +    +  ++SPP + K + GG+
Sbjct: 90  SGLSYESALLSSNKWKMKQAFMKHGVRTARFLKVQTLQEAYSAFEVLSPPLIFKAVDGGA 149

Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDVTEIAVP 195
           S GI+ +     +             D  ++E++++G E      V  +      +  +P
Sbjct: 150 SKGIVKVADMAHVEYAFETVRKDTKLDFFIVEEFIEGTEFGAQAFVYDNQ----IQFIMP 205

Query: 196 KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS-RSDFLFDPLS 254
             DF  Y      +   H +P ++P ++ +++      + +A+     +  +DF+     
Sbjct: 206 HGDFVFYGDTGVPIG--HYVPYELPEEVQQDLFSQLKQSIEALELNHCAINADFIL--KD 261

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAY-AGYSFRELLLWMVEDA 296
             V+ LEI  + G T     PE+ +   G+ + E    +++ A
Sbjct: 262 GHVYVLEIGGRAGAT---CLPELVSTFYGFDYYE---QIIKAA 298


>gi|319400937|gb|EFV89156.1| biotin carboxylase [Staphylococcus epidermidis FRI909]
          Length = 452

 Score = 79.8 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 79/220 (35%), Gaps = 18/220 (8%)

Query: 56  NVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
           N +H  +G   E       +E   I +         +  DK+ ++Q V   GVPV P   
Sbjct: 75  NAIHPGYGFLSESTNFAKAVEDNHIHFIGPSKTTMEMMGDKITARQTVKQAGVPVIPGSN 134

Query: 113 VNRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS----WNHGD 164
               ++D        I  P V+K   GG   GI ++K+   +   L ++ S    + + D
Sbjct: 135 DAVQSVDEIKLLAKEIGFPVVLKVASGGGGKGIRIVKEASQLDQALKEAKSEGQKYFNDD 194

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           ++ +E ++     +   ++GD   +   +            + +         A +    
Sbjct: 195 RVYVEAFIPVAKHVEVQIIGDGKNNYVHLGERDCSV----QRKNQKLIEEAPCAALTEQR 250

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
              +   A    QA   R     +FL    +   +++E+N
Sbjct: 251 RTRICSDAVKVAQASRYRSAGTIEFLVTEDAH--YFIEMN 288


>gi|154253730|ref|YP_001414554.1| acetyl-CoA carboxylase, biotin carboxylase [Parvibaculum
           lavamentivorans DS-1]
 gi|154157680|gb|ABS64897.1| acetyl-CoA carboxylase, biotin carboxylase [Parvibaculum
           lavamentivorans DS-1]
          Length = 447

 Score = 79.8 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 41/220 (18%), Positives = 83/220 (37%), Gaps = 18/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     IL+   I +         L  DK+++K    S G+P  P    
Sbjct: 77  AVHPGYGFLSENAKFADILKAHGITFIGPSGDHIRLMGDKIQAKVTAKSLGIPCVPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGDQ 165
            I  +            P ++K   GG   G+ V +    +   L     ++ +    D 
Sbjct: 137 AITTDEQAYKVAEETGYPVLVKAAAGGGGRGMKVARSRGELSSALSTARAEAKAAFGDDA 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           L +E+Y+     +   V+ D+  +V  +        S + ++  +      PA +     
Sbjct: 197 LYMEKYLGQPRHIEVQVIADSHGNVAHLGERD---CSLQRRHQKVLEESPSPA-LNTAQR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            E+  +   A + +G  G+   +FL+     + F++E+N 
Sbjct: 253 AEIGGIVSKAIKGLGYLGVGTIEFLY--EDGQFFFIEMNT 290


>gi|262382310|ref|ZP_06075447.1| phosphoribosylglycinamide synthetase [Bacteroides sp. 2_1_33B]
 gi|262295188|gb|EEY83119.1| phosphoribosylglycinamide synthetase [Bacteroides sp. 2_1_33B]
          Length = 399

 Score = 79.8 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 36/196 (18%), Positives = 75/196 (38%), Gaps = 14/196 (7%)

Query: 71  ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTMDSQHLIS-PP 127
           + +   +P        + L  DK + K   S  GV   P   I  +   +D+   +   P
Sbjct: 86  LCDTRALP--GYSEEVAELCNDKSKMKLRFSEYGVNTAPFKQIYTDEALLDAIDKVGGYP 143

Query: 128 YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC-GVMGDAS 186
            +IK      S GI      +       ++ S    D +L+E+++ G E      + +  
Sbjct: 144 VIIKATDLAGSQGIYKAVNKEEAFDGFCKAMSATRVDYVLVEKFLQGREFGAQAFISNGE 203

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS-R 245
                  +P  D   Y+   +     +V P +    + +++++ A +A +A+G    +  
Sbjct: 204 ---ILFVMPHGDIL-YQADTAVPVGHYV-PYECSDILREKIRKEAEMAIKAMGLNNCAVN 258

Query: 246 SDFLFDPLSRKVFWLE 261
            DF+    +  ++ LE
Sbjct: 259 IDFI--EENGVIYVLE 272


>gi|258444985|ref|ZP_05693302.1| pyruvate carboxylase [Staphylococcus aureus A6300]
 gi|257856107|gb|EEV79025.1| pyruvate carboxylase [Staphylococcus aureus A6300]
          Length = 1150

 Score = 79.8 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 33/221 (14%), Positives = 75/221 (33%), Gaps = 20/221 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+           I +    +    +  DK++++       +PV P    
Sbjct: 80  AIHPGYGFLSENEQFARRCAEEGIKFIGPHLEHLDMFGDKVKARTTAIKADLPVIPGTDG 139

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
            I       +       P +IK   GG   G+ +++++  +     ++ S         +
Sbjct: 140 PIKSYELAKEFAEEAGFPLMIKATSGGGGKGMRIVREESELEDAFHRAKSEAEKSFGNSE 199

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDI 223
           + IE+Y+D    +   V+GD   ++              ++        V P   +   +
Sbjct: 200 VYIERYIDNPKHIEVQVIGDEHGNIV-----HLFERDCSVQRRHQKVVEVAPSVGLSPTL 254

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +   A    + I        +FL      + F++E+N 
Sbjct: 255 RQRICDAAIQLMENIKYVNAGTVEFLV--SGDEFFFIEVNP 293


>gi|118619024|ref|YP_907356.1| acetyl-/propionyl-coenzyme a carboxylase alpha chain AccA1
           [Mycobacterium ulcerans Agy99]
 gi|118571134|gb|ABL05885.1| acetyl-/propionyl-coenzyme a carboxylase alpha chain AccA1
           [Mycobacterium ulcerans Agy99]
          Length = 669

 Score = 79.8 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 39/222 (17%), Positives = 82/222 (36%), Gaps = 19/222 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+    A  +   + +  S   A  +  DK+ +K  VS+  VPV P I  
Sbjct: 77  AIHPGYGFLSENAEFAAACDRAGVVFLGSPAGAIEVMGDKIAAKNAVSAFDVPVVPGIAR 136

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL-----QSSSWNHGD 164
              T D    +   +  P ++KP  GG   G+ ++++   +   L+      +S++   D
Sbjct: 137 PGLTDDDLIAAADEVGYPVLVKPSAGGGGKGMRMVEEPARLREALVSARREAASAFG-DD 195

Query: 165 QLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            L +E++V     +   V+ D   +V  +   +        K             +    
Sbjct: 196 TLFLERFVLRPRHIEVQVLADTHGNVVHLGERECSLQRRHQK----VIEEAPSPLLDAPT 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFD-PLSRKVFWLEINV 264
              +   A    +++   G    + +       + F++E+N 
Sbjct: 252 RARIGAAACNTARSVDYVGAGTVELIVSGDRPDEFFFMEMNT 293


>gi|302332723|gb|ADL22916.1| putative pyruvate carboxylase [Staphylococcus aureus subsp. aureus
           JKD6159]
          Length = 1150

 Score = 79.8 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 33/221 (14%), Positives = 75/221 (33%), Gaps = 20/221 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+           I +    +    +  DK++++       +PV P    
Sbjct: 80  AIHPGYGFLSENEQFARRCAEEGIKFIGPHLEHLDMFGDKVKARTTAIKADLPVIPGTDG 139

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
            I       +       P +IK   GG   G+ +++++  +     ++ S         +
Sbjct: 140 PIKSYELAKEFAEEAGFPLMIKATSGGGGKGMRIVREESELEDAFHRAKSEAEKSFGNSE 199

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDI 223
           + IE+Y+D    +   V+GD   ++              ++        V P   +   +
Sbjct: 200 VYIERYIDNPKHIEVQVIGDEHGNIV-----HLFERDCSVQRRHQKVVEVAPSVGLSPTL 254

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +   A    + I        +FL      + F++E+N 
Sbjct: 255 RQRICDAAIQLMENIKYVNAGTVEFLV--SGDEFFFIEVNP 293


>gi|282916364|ref|ZP_06324126.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus D139]
 gi|282319804|gb|EFB50152.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus D139]
          Length = 1150

 Score = 79.8 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 33/221 (14%), Positives = 75/221 (33%), Gaps = 20/221 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+           I +    +    +  DK++++       +PV P    
Sbjct: 80  AIHPGYGFLSENEQFARRCAEEGIKFIGPHLEHLDMFGDKVKARTTAIKADLPVIPGTDG 139

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
            I       +       P +IK   GG   G+ +++++  +     ++ S         +
Sbjct: 140 PIKSYELAKEFAEEAGFPLMIKATSGGGGKGMRIVREESELEDAFHRAKSEAEKSFGNSE 199

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDI 223
           + IE+Y+D    +   V+GD   ++              ++        V P   +   +
Sbjct: 200 VYIERYIDNPKHIEVQVIGDEHGNIV-----HLFERDCSVQRRHQKVVEVAPSVGLSPTL 254

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +   A    + I        +FL      + F++E+N 
Sbjct: 255 RQRICDAAIQLMENIKYVNAGTVEFLV--SGDEFFFIEVNP 293


>gi|253733651|ref|ZP_04867816.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus TCH130]
 gi|253728351|gb|EES97080.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus TCH130]
          Length = 1150

 Score = 79.8 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 33/221 (14%), Positives = 75/221 (33%), Gaps = 20/221 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+           I +    +    +  DK++++       +PV P    
Sbjct: 80  AIHPGYGFLSENEQFARRCAEEGIKFIGPHLEHLDMFGDKVKARTTAIKADLPVIPGTDG 139

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
            I       +       P +IK   GG   G+ +++++  +     ++ S         +
Sbjct: 140 PIKSYELAKEFAEEAGFPLMIKATSGGGGKGMRIVREESELEDAFHRAKSEAEKSFGNSE 199

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDI 223
           + IE+Y+D    +   V+GD   ++              ++        V P   +   +
Sbjct: 200 VYIERYIDNPKHIEVQVIGDEHGNIV-----HLFERDCSVQRRHQKVVEVAPSVGLSPTL 254

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +   A    + I        +FL      + F++E+N 
Sbjct: 255 RQRICDAAIQLMENIKYVNAGTVEFLV--SGDEFFFIEVNP 293


>gi|242556622|pdb|3HBL|A Chain A, Crystal Structure Of S. Aureus Pyruvate Carboxylase T908a
           Mutant
 gi|242556623|pdb|3HBL|B Chain B, Crystal Structure Of S. Aureus Pyruvate Carboxylase T908a
           Mutant
 gi|242556624|pdb|3HBL|C Chain C, Crystal Structure Of S. Aureus Pyruvate Carboxylase T908a
           Mutant
 gi|242556625|pdb|3HBL|D Chain D, Crystal Structure Of S. Aureus Pyruvate Carboxylase T908a
           Mutant
          Length = 1150

 Score = 79.8 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 33/221 (14%), Positives = 75/221 (33%), Gaps = 20/221 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+           I +    +    +  DK++++       +PV P    
Sbjct: 80  AIHPGYGFLSENEQFARRCAEEGIKFIGPHLEHLDMFGDKVKARTTAIKADLPVIPGTDG 139

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
            I       +       P +IK   GG   G+ +++++  +     ++ S         +
Sbjct: 140 PIKSYELAKEFAEEAGFPLMIKATSGGGGKGMRIVREESELEDAFHRAKSEAEKSFGNSE 199

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDI 223
           + IE+Y+D    +   V+GD   ++              ++        V P   +   +
Sbjct: 200 VYIERYIDNPKHIEVQVIGDEHGNIV-----HLFERDCSVQRRHQKVVEVAPSVGLSPTL 254

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +   A    + I        +FL      + F++E+N 
Sbjct: 255 RQRICDAAIQLMENIKYVNAGTVEFLV--SGDEFFFIEVNP 293


>gi|168988872|pdb|3BG5|A Chain A, Crystal Structure Of Staphylococcus Aureus Pyruvate
           Carboxylase
 gi|168988873|pdb|3BG5|B Chain B, Crystal Structure Of Staphylococcus Aureus Pyruvate
           Carboxylase
 gi|168988874|pdb|3BG5|C Chain C, Crystal Structure Of Staphylococcus Aureus Pyruvate
           Carboxylase
 gi|168988875|pdb|3BG5|D Chain D, Crystal Structure Of Staphylococcus Aureus Pyruvate
           Carboxylase
          Length = 1173

 Score = 79.8 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 33/221 (14%), Positives = 75/221 (33%), Gaps = 20/221 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+           I +    +    +  DK++++       +PV P    
Sbjct: 103 AIHPGYGFLSENEQFARRCAEEGIKFIGPHLEHLDMFGDKVKARTTAIKADLPVIPGTDG 162

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
            I       +       P +IK   GG   G+ +++++  +     ++ S         +
Sbjct: 163 PIKSYELAKEFAEEAGFPLMIKATSGGGGKGMRIVREESELEDAFHRAKSEAEKSFGNSE 222

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDI 223
           + IE+Y+D    +   V+GD   ++              ++        V P   +   +
Sbjct: 223 VYIERYIDNPKHIEVQVIGDEHGNIV-----HLFERDCSVQRRHQKVVEVAPSVGLSPTL 277

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +   A    + I        +FL      + F++E+N 
Sbjct: 278 RQRICDAAIQLMENIKYVNAGTVEFLV--SGDEFFFIEVNP 316


>gi|15924104|ref|NP_371638.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus Mu50]
 gi|15926699|ref|NP_374232.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus N315]
 gi|148267607|ref|YP_001246550.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus JH9]
 gi|150393662|ref|YP_001316337.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus JH1]
 gi|156979437|ref|YP_001441696.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus Mu3]
 gi|253316745|ref|ZP_04839958.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus str.
           CF-Marseille]
 gi|255005901|ref|ZP_05144502.2| pyruvate carboxylase [Staphylococcus aureus subsp. aureus
           Mu50-omega]
 gi|257795155|ref|ZP_05644134.1| pyruvate carboxylase [Staphylococcus aureus A9781]
 gi|258407136|ref|ZP_05680285.1| pyruvate carboxylase [Staphylococcus aureus A9763]
 gi|258421772|ref|ZP_05684693.1| pyruvate carboxylase [Staphylococcus aureus A9719]
 gi|258443374|ref|ZP_05691717.1| pyruvate carboxylase [Staphylococcus aureus A8115]
 gi|258449840|ref|ZP_05697938.1| pyruvate carboxylase [Staphylococcus aureus A6224]
 gi|258454939|ref|ZP_05702902.1| pyruvate carboxylase [Staphylococcus aureus A5937]
 gi|269202726|ref|YP_003281995.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus ED98]
 gi|282894141|ref|ZP_06302372.1| pyruvate carboxylase [Staphylococcus aureus A8117]
 gi|282928636|ref|ZP_06336233.1| pyruvate carboxylase [Staphylococcus aureus A10102]
 gi|295405918|ref|ZP_06815727.1| pyruvate carboxylase [Staphylococcus aureus A8819]
 gi|296276065|ref|ZP_06858572.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus MR1]
 gi|297246388|ref|ZP_06930232.1| pyruvate carboxylase [Staphylococcus aureus A8796]
 gi|242556707|pdb|3HO8|A Chain A, Crystal Structure Of S. Aureus Pyruvate Carboxylase In
           Complex With Coenzyme A
 gi|242556708|pdb|3HO8|D Chain D, Crystal Structure Of S. Aureus Pyruvate Carboxylase In
           Complex With Coenzyme A
 gi|242556709|pdb|3HO8|C Chain C, Crystal Structure Of S. Aureus Pyruvate Carboxylase In
           Complex With Coenzyme A
 gi|242556710|pdb|3HO8|B Chain B, Crystal Structure Of S. Aureus Pyruvate Carboxylase In
           Complex With Coenzyme A
 gi|13700915|dbj|BAB42211.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus N315]
 gi|14246884|dbj|BAB57276.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus Mu50]
 gi|147740676|gb|ABQ48974.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus JH9]
 gi|149946114|gb|ABR52050.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus JH1]
 gi|156721572|dbj|BAF77989.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus Mu3]
 gi|257789127|gb|EEV27467.1| pyruvate carboxylase [Staphylococcus aureus A9781]
 gi|257841291|gb|EEV65736.1| pyruvate carboxylase [Staphylococcus aureus A9763]
 gi|257842105|gb|EEV66533.1| pyruvate carboxylase [Staphylococcus aureus A9719]
 gi|257851464|gb|EEV75403.1| pyruvate carboxylase [Staphylococcus aureus A8115]
 gi|257856760|gb|EEV79663.1| pyruvate carboxylase [Staphylococcus aureus A6224]
 gi|257862819|gb|EEV85584.1| pyruvate carboxylase [Staphylococcus aureus A5937]
 gi|262075016|gb|ACY10989.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus ED98]
 gi|282589675|gb|EFB94761.1| pyruvate carboxylase [Staphylococcus aureus A10102]
 gi|282763627|gb|EFC03756.1| pyruvate carboxylase [Staphylococcus aureus A8117]
 gi|285816795|gb|ADC37282.1| Pyruvate carboxyl transferase [Staphylococcus aureus 04-02981]
 gi|294969353|gb|EFG45373.1| pyruvate carboxylase [Staphylococcus aureus A8819]
 gi|297176754|gb|EFH36014.1| pyruvate carboxylase [Staphylococcus aureus A8796]
 gi|312829508|emb|CBX34350.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus ECT-R 2]
 gi|315130300|gb|EFT86287.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus CGS03]
 gi|329725206|gb|EGG61695.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus 21172]
          Length = 1150

 Score = 79.8 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 33/221 (14%), Positives = 75/221 (33%), Gaps = 20/221 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+           I +    +    +  DK++++       +PV P    
Sbjct: 80  AIHPGYGFLSENEQFARRCAEEGIKFIGPHLEHLDMFGDKVKARTTAIKADLPVIPGTDG 139

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
            I       +       P +IK   GG   G+ +++++  +     ++ S         +
Sbjct: 140 PIKSYELAKEFAEEAGFPLMIKATSGGGGKGMRIVREESELEDAFHRAKSEAEKSFGNSE 199

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDI 223
           + IE+Y+D    +   V+GD   ++              ++        V P   +   +
Sbjct: 200 VYIERYIDNPKHIEVQVIGDEHGNIV-----HLFERDCSVQRRHQKVVEVAPSVGLSPTL 254

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +   A    + I        +FL      + F++E+N 
Sbjct: 255 RQRICDAAIQLMENIKYVNAGTVEFLV--SGDEFFFIEVNP 293


>gi|258423614|ref|ZP_05686504.1| pyruvate carboxylase [Staphylococcus aureus A9635]
 gi|283770175|ref|ZP_06343067.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus H19]
 gi|257846315|gb|EEV70339.1| pyruvate carboxylase [Staphylococcus aureus A9635]
 gi|283460322|gb|EFC07412.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus H19]
 gi|323440663|gb|EGA98373.1| pyruvate carboxylase [Staphylococcus aureus O11]
 gi|323442394|gb|EGB00024.1| pyruvate carboxylase [Staphylococcus aureus O46]
          Length = 1150

 Score = 79.8 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 33/221 (14%), Positives = 75/221 (33%), Gaps = 20/221 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+           I +    +    +  DK++++       +PV P    
Sbjct: 80  AIHPGYGFLSENEQFARRCAEEGIKFIGPHLEHLDMFGDKVKARTTAIKADLPVIPGTDG 139

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
            I       +       P +IK   GG   G+ +++++  +     ++ S         +
Sbjct: 140 PIKSYELAKEFAEEAGFPLMIKATSGGGGKGMRIVREESELEDAFHRAKSEAEKSFGNSE 199

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDI 223
           + IE+Y+D    +   V+GD   ++              ++        V P   +   +
Sbjct: 200 VYIERYIDNPKHIEVQVIGDEHGNIV-----HLFERDCSVQRRHQKVVEVAPSVGLSPTL 254

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +   A    + I        +FL      + F++E+N 
Sbjct: 255 RQRICDAAIQLMENIKYVNAGTVEFLV--SGDEFFFIEVNP 293


>gi|134302449|ref|YP_001122419.1| acetyl-CoA carboxylase, biotin carboxylase [Francisella tularensis
           subsp. tularensis WY96-3418]
 gi|134050226|gb|ABO47297.1| acetyl-CoA carboxylase, biotin carboxylase [Francisella tularensis
           subsp. tularensis WY96-3418]
          Length = 451

 Score = 79.8 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 34/222 (15%), Positives = 80/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +      +  +  DK+ + + +   GVP  P    
Sbjct: 77  AIHPGYGFLSENAKFAKAVEESSFIFIGPRAESIEIMGDKVEAIRYMKKAGVPCVPGSGS 136

Query: 112 ---LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GD 164
                 +  ++    I  P +IK   GG   G+ +++K + +   +  + S        D
Sbjct: 137 PLGSDEKKNLEIAEKIGYPVIIKAAGGGGGRGMSIVRKKEDLINAISLTKSEARIAFNND 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLD 222
            + +E++++    +   V GD   +   +            +          PA  +  +
Sbjct: 197 MVYMEKFLENPRHIEIQVFGDGEGNAVYL-----FERDCSTQRRHQKVIEEAPAIGLSDE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             K +      A + +  RG    +FL+   + + +++E+N 
Sbjct: 252 ERKRIGEQCVSACKILKYRGAGTFEFLY--ENGEFYFIEMNT 291


>gi|82750722|ref|YP_416463.1| pyruvate carboxylase [Staphylococcus aureus RF122]
 gi|82656253|emb|CAI80667.1| pyruvate carboxylase [Staphylococcus aureus RF122]
          Length = 1150

 Score = 79.8 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 33/221 (14%), Positives = 75/221 (33%), Gaps = 20/221 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+           I +    +    +  DK++++       +PV P    
Sbjct: 80  AIHPGYGFLSENEQFARRCAEEGIKFIGPHLEHLDMFGDKVKARTTAIKADLPVIPGTEG 139

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
            I       +       P +IK   GG   G+ +++++  +     ++ S         +
Sbjct: 140 PIKSYELAKEFAEEAGFPLMIKATSGGGGKGMRIVREESELEDAFHRAKSEAEKSFGNSE 199

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDI 223
           + IE+Y+D    +   V+GD   ++              ++        V P   +   +
Sbjct: 200 VYIERYIDNPKHIEVQVIGDEHGNIV-----HLFERDCSVQRRHQKVVEVAPSVGLSPTL 254

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +   A    + I        +FL      + F++E+N 
Sbjct: 255 RQRICDAAIQLMENIKYVNAGTVEFLV--SGDEFFFIEVNP 293


>gi|268527761|gb|ACZ06066.1| biotin carboxylase [Arachis hypogaea]
          Length = 540

 Score = 79.8 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 78/220 (35%), Gaps = 17/220 (7%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
           +LH   G   E+ +   +     I +      +  +  DK  ++  +   GVP  P    
Sbjct: 151 MLHPGCGFLAENAVFVEMCREHGINFIGPNPDSIRVMGDKSTARDTMKKAGVPTVPGSDG 210

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS----IPLDLLQSSSWNHGDQ 165
            +      +   + I  P +IK   GG   G+ + K+       +     ++++    D 
Sbjct: 211 LLQTTEEAIRLANEIGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDG 270

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+YV +   +   V+ D   +V               K             +  ++ 
Sbjct: 271 VYLEKYVQNPRHIEFQVLADKYGNVVHFGGRDCSIQRRNQKLL----EEAPSPALTPELR 326

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K +   A  A  +IG  G+   +FL D      +++E+N 
Sbjct: 327 KAMGDAAVAAAASIGYIGVGTVEFLLDER-GSFYFMEMNT 365


>gi|194363974|ref|YP_002026584.1| carbamoyl-phosphate synthase L chain ATP-binding [Stenotrophomonas
           maltophilia R551-3]
 gi|194346778|gb|ACF49901.1| Carbamoyl-phosphate synthase L chain ATP-binding [Stenotrophomonas
           maltophilia R551-3]
          Length = 660

 Score = 79.8 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 83/222 (37%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+           I +      A     DK  +K +++  GVP+ P    
Sbjct: 77  AIHPGYGFLSENADFADACAAAGITFIGPPASAIRAMGDKSAAKALMAKAGVPLTPGYHG 136

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL-----QSSSWNHGD 164
           ++   D        I  P +IK   GG   G+  +++ +     L       +S++   D
Sbjct: 137 DQQAPDFLRAQADGIGYPVLIKASAGGGGKGMRKVERSEDFVDALASCQREAASAFG-ND 195

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            +L+E+YV+    +   V GD+  +   +           ++          PA  +  +
Sbjct: 196 HVLVEKYVERPRHIEIQVFGDSHGEAVYL-----FERDCSVQRRHQKVLEEAPAPGMSAE 250

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
               + + A  A +A+G  G    +F+  P     +++E+N 
Sbjct: 251 RRAAMGKAAVDAARAVGYVGAGTVEFIAGP-DGDFYFMEMNT 291


>gi|253688770|ref|YP_003017960.1| urea carboxylase [Pectobacterium carotovorum subsp. carotovorum
           PC1]
 gi|251755348|gb|ACT13424.1| urea carboxylase [Pectobacterium carotovorum subsp. carotovorum
           PC1]
          Length = 1201

 Score = 79.8 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 36/235 (15%), Positives = 80/235 (34%), Gaps = 29/235 (12%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---FTMDSQHLISPPYVIKP 132
           ++ +         +   K  ++ +     VP+     +       + +   I  P ++K 
Sbjct: 99  QVAFVGPTPQQLRVFGLKHTARALAKKHNVPLLEGTELLENIDAALGAAVAIGYPVMLKS 158

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQLLIEQYVD-GIELTCGVMGDASL 187
             GG  +G+ V      +                   + IE+Y++    L   + GD   
Sbjct: 159 TAGGGGIGMRVCYSATELSDAFETVKRLGQNNFSDAGVFIEKYIECARHLEVQIFGDGQG 218

Query: 188 DVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRS 246
           DV  +           ++  +       PA  +P  +   +   A    QA+  R     
Sbjct: 219 DVLAL-----GARDCSVQRRNQKVIEETPAPNLPDGVADALCAAAISLAQAVNYRSAGTV 273

Query: 247 DFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR----ELLLWMVEDAS 297
           +F++D  + + ++LE+N             +    G + +    +L+ WM+E A+
Sbjct: 274 EFVYDSATDRFYFLEVNT-----------RLQVEHGVTEQVWGVDLVRWMIELAA 317


>gi|85706530|ref|ZP_01037623.1| acetyl/propionyl CoA carboxylase alpha subunit [Roseovarius sp.
           217]
 gi|85668942|gb|EAQ23810.1| acetyl/propionyl CoA carboxylase alpha subunit [Roseovarius sp.
           217]
          Length = 672

 Score = 79.8 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 39/199 (19%), Positives = 76/199 (38%), Gaps = 15/199 (7%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI----LVNRFTMDSQHLISPPYVIK 131
            + +      A A    K+ +K    + GVPV P        +   +     +  P+++K
Sbjct: 104 GLVFIGPEPDAIAKMGSKIAAKAAAEAAGVPVLPGYRGADQSDARLLQEAKALGTPFLVK 163

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQLLIEQY-VDGIELTCGVMGDAS 186
              GG   G+ ++      P  +  + +          + +E+Y      +   V+GD  
Sbjct: 164 ASAGGGGRGMRLVTDMADAPEAIASARAEAQGAFGDPAVFLERYAPRARHVEVQVLGD-- 221

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISR 245
              T   V         L+ +        PA  +P D+ ++++  A    QAIG R    
Sbjct: 222 ---TNGTVLHLGDRDCSLQRNHQKLIEEAPAPDLPDDLREDMRAAAVRLAQAIGYRSAGT 278

Query: 246 SDFLFDPLSRKVFWLEINV 264
            ++L+DP   + ++LE+N 
Sbjct: 279 VEYLYDPEHAEYYFLEMNT 297


>gi|225848336|ref|YP_002728499.1| acetyl-CoA carboxylase, biotin carboxylase subunit
           [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225643904|gb|ACN98954.1| acetyl-CoA carboxylase, biotin carboxylase subunit
           [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 448

 Score = 79.8 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 83/220 (37%), Gaps = 14/220 (6%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS- 110
           D  +   +G   E+    AI E   I +         L+ DK  +++      VP+ P  
Sbjct: 79  DAVYPG-YGFLAENPNFAAICEKSNIKFIGPSSKTLKLTGDKAAAREAAKKANVPIIPGS 137

Query: 111 --ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS----IPLDLLQSSSWNHGD 164
             +   +  ++    I  P +IK   GG   G+ V+  DQ     +PL   ++ S     
Sbjct: 138 PPVDQLKDALEVASKIGYPVLIKAAAGGGGRGMRVVHNDQELTRLLPLAQREAESAFGDK 197

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            + IE++++    +   ++ D   ++  +   +        K             I   I
Sbjct: 198 TVYIEKFIENPKHIEIQILADEYGNIIHLGERECSVQRRHQK----LIEESPSPFIDEKI 253

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            KE+   A    +A+G  G    +F+ D   +  +++E+N
Sbjct: 254 RKEMGEAAVRFAKAVGFTGAGTVEFIVDK-DKNFYFIEMN 292


>gi|325980925|ref|YP_004293327.1| urea carboxylase [Nitrosomonas sp. AL212]
 gi|325530444|gb|ADZ25165.1| urea carboxylase [Nitrosomonas sp. AL212]
          Length = 1207

 Score = 79.8 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 45/298 (15%), Positives = 96/298 (32%), Gaps = 38/298 (12%)

Query: 23  ASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNV--------LHGNFG---EDGLVQAI 71
           A AL     +  ++          ++L+PD    V        +H  +G   E+    A 
Sbjct: 35  ADALSRHVTEADEVYCIGEGVAAESYLRPDKILQVAEQSGAQAIHPGYGFLSENAEFAAQ 94

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---QHLISPPY 128
               +I +             K  ++ +     +P+ P   +      +      I  P 
Sbjct: 95  CAAQQICFIGPTPQQMRAFGLKHTARALAMENQIPLLPGTGLLENLDAACHQAKHIGYPV 154

Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN----HGDQLLIEQYVD-GIELTCGVMG 183
           ++K   GG  +G+ +      +        +          L +E+YVD    +   + G
Sbjct: 155 MLKSTAGGGGIGMRLCWNQDELSGAYESVKTLAQNNFKDAGLFLEKYVDPARHIEVQIFG 214

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D    V  +            K             +   + + +   A    +A+  +  
Sbjct: 215 DGKGQVIALGERDCSMQRRNQK----VIEETPAPNLAPHLRQSLLDTAVRLGKAVNYQSA 270

Query: 244 SRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
              +++FD  + + ++LE+N +     G+T            G+   +L+ WMV  A+
Sbjct: 271 GTVEYIFDASTGEFYFLEVNTRLQVEHGVTE--------EATGF---DLVEWMVRQAA 317


>gi|254694430|ref|ZP_05156258.1| pyruvate carboxylase [Brucella abortus bv. 3 str. Tulya]
 gi|261214744|ref|ZP_05929025.1| pyruvate carboxylase [Brucella abortus bv. 3 str. Tulya]
 gi|260916351|gb|EEX83212.1| pyruvate carboxylase [Brucella abortus bv. 3 str. Tulya]
          Length = 1158

 Score = 79.8 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 33/199 (16%), Positives = 68/199 (34%), Gaps = 15/199 (7%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIK 131
            I +            +K+ ++ +    GVPV P+       MD        I  P ++K
Sbjct: 112 GIVFIGPKPETMRRLGNKVAARNLAIEIGVPVVPATDPLPDDMDEVKKLATQIGYPLMLK 171

Query: 132 PLKGGSSLGIIVIKKDQSIP----LDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDAS 186
              GG   G+  I+ +  +         ++ +    D++ +E+ V+    +   ++GD  
Sbjct: 172 ASWGGGGRGMRAIRAEADLAREVMEAKREAKAAFGKDEVYLEKLVERARHVEVQILGDTY 231

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISR 245
            +   +            K          PA  +     +E+         A    G   
Sbjct: 232 GNAVHLFERDCSIQRRNQK-----VVERAPAPYLNDAQRRELADYGLKIAHATDYIGAGT 286

Query: 246 SDFLFDPLSRKVFWLEINV 264
            +FL D  + K +++E+N 
Sbjct: 287 VEFLMDADTGKFYFIEVNP 305


>gi|73538542|ref|YP_298909.1| pyruvate carboxylase [Ralstonia eutropha JMP134]
 gi|72121879|gb|AAZ64065.1| Pyruvate carboxylase [Ralstonia eutropha JMP134]
          Length = 1169

 Score = 79.8 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 42/246 (17%), Positives = 90/246 (36%), Gaps = 25/246 (10%)

Query: 33  VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLV-QAILELLEIPYTHSGILASA 88
            + +D+D  +  +    K D     +H  +G   E+    QA+++   I +         
Sbjct: 63  AAYLDID-DILRIARQAKVD----AIHPGYGFLSENPDFAQAVMD-AGIRWIGPSPDVMR 116

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSLGIIVI 144
              +K+ ++      GVPV P+       +D        I  P ++K   GG   G+ ++
Sbjct: 117 KLGNKVAARNAAIEAGVPVMPATDPLPQDLDECKRLAAGIGYPLMLKASWGGGGRGMRML 176

Query: 145 KKDQSI----PLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDF 199
           + +Q +    P    ++ +    D++ +E+ V     +    +GD   ++  +       
Sbjct: 177 ENEQDLETLLPAARREALAAFGNDEVYVEKLVRNARHVEVQALGDTHGNLVHLYERDCTV 236

Query: 200 YSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
                K          PA  +       +   A    +A+G       +FL D  S + +
Sbjct: 237 QRRNQK-----VVERAPAPYLDAAGRAALCDAAMRLMRAVGYTHAGTIEFLMDADSGQFY 291

Query: 259 WLEINV 264
           ++E+N 
Sbjct: 292 FIEVNP 297


>gi|320165739|gb|EFW42638.1| propionyl-CoA carboxylase [Capsaspora owczarzaki ATCC 30864]
          Length = 775

 Score = 79.8 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 82/220 (37%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+    A LE L + +      A     DK+ SK + +   V V P    
Sbjct: 155 AVHPGYGFLSENNHFAAQLEQLGVTFIGPHSGAIDAMGDKIHSKILATEAKVNVIPGYNG 214

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS----IPLDLLQSSSWNHGDQ 165
            +      +     I  P ++K   GG   G+ V   D+       L   +++S    D+
Sbjct: 215 VVKDADHAIKIAQEIGYPVMVKASGGGGGKGMRVAWNDEEVREGFKLSAAEAASSFGDDR 274

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           L +E+++D    +   V+GD   +V  +   +        K           + I  +  
Sbjct: 275 LFVEKFIDNPRHIEIQVLGDNHGNVVYLNERECSIQRRNQK----VIEEAPSSFIDPETR 330

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            ++ + A +  +A+        + + D   R  ++LE+N 
Sbjct: 331 AKMGQQAVMLAKAVKYNSAGTVEMMVDSK-RNFYFLEMNT 369


>gi|148359375|ref|YP_001250582.1| acyl CoA carboxylase subunit alpha [Legionella pneumophila str.
           Corby]
 gi|296107421|ref|YP_003619121.1| acyl CoA carboxylase subunit alpha subunit [Legionella pneumophila
           2300/99 Alcoy]
 gi|148281148|gb|ABQ55236.1| acyl CoA carboxylase subunit alpha subunit [Legionella pneumophila
           str. Corby]
 gi|295649322|gb|ADG25169.1| acyl CoA carboxylase subunit alpha subunit [Legionella pneumophila
           2300/99 Alcoy]
          Length = 654

 Score = 79.8 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 75/220 (34%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       E   I +    I A      K  +KQ++    VP+ P    
Sbjct: 77  AIHPGYGFLSENPDFAKACEQAGIVFIGPSIKAMEAMASKQLAKQLLEKTKVPLTPGYHG 136

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
              + +        I  P +IK   GG   G+  +  ++     L  +   +      D 
Sbjct: 137 VEQSEEKLLSEAKKIGFPVLIKAANGGGGKGMRAVHDEKEFHDALAGAKRESMASFADDT 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           ++IE+ V +   +   +M D   +V  +            K             +   + 
Sbjct: 197 MIIERLVLNPRHVEVQIMADNHGNVVHLFERDCSIQRRHQKII----EEAPAPNLSPMLR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +   A    ++I  RG    +FL D    K +++E+N 
Sbjct: 253 QRLAEAACEVARSINYRGAGTVEFLVDGED-KFYFMEMNT 291


>gi|330890779|gb|EGH23440.1| 3-methylcrotonyl-CoA carboxylase alpha subunit [Pseudomonas
           syringae pv. mori str. 301020]
          Length = 649

 Score = 79.8 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 41/221 (18%), Positives = 77/221 (34%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      +E   + +      A      K  +K ++   GVP+ P    
Sbjct: 81  AIHPGYGFLSENADFARAIEEAGLIFLGPPASAIDAMGSKSAAKSLMEQAGVPLVPGYHG 140

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
           +   ++    +   I  P ++K   GG   G+  ++    +   L  +           +
Sbjct: 141 DAQNIETFRSAAERIGYPVLLKATAGGGGKGMKGVEHSGELAEALASAQREALSSFGDAR 200

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           +L+E+YV     +   V  D       +            K          PA  +  ++
Sbjct: 201 MLVEKYVLTPRHVEIQVFADRHGHCLYLNERDCSIQRRHQK-----VVEEAPAPGLTPEL 255

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            K +   A  A QAIG  G    +FL D    + F++E+N 
Sbjct: 256 RKAMGEAAVKAAQAIGYVGAGTVEFLLDAR-GEFFFMEMNT 295


>gi|262406489|ref|ZP_06083038.1| phosphoribosylglycinamide formyltransferase 2 [Bacteroides sp.
           2_1_22]
 gi|294646119|ref|ZP_06723782.1| phosphoribosylglycinamide formyltransferase 2 [Bacteroides ovatus
           SD CC 2a]
 gi|294808286|ref|ZP_06767044.1| phosphoribosylglycinamide formyltransferase 2 [Bacteroides
           xylanisolvens SD CC 1b]
 gi|262355192|gb|EEZ04283.1| phosphoribosylglycinamide formyltransferase 2 [Bacteroides sp.
           2_1_22]
 gi|292638563|gb|EFF56918.1| phosphoribosylglycinamide formyltransferase 2 [Bacteroides ovatus
           SD CC 2a]
 gi|294444505|gb|EFG13214.1| phosphoribosylglycinamide formyltransferase 2 [Bacteroides
           xylanisolvens SD CC 1b]
 gi|295084020|emb|CBK65543.1| formate-dependent phosphoribosylglycinamide formyltransferase
           [Bacteroides xylanisolvens XB1A]
          Length = 389

 Score = 79.8 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 47/255 (18%), Positives = 86/255 (33%), Gaps = 36/255 (14%)

Query: 31  FKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
           F+V  +     +  V+   +PD+    +     E         L +       ++ SA +
Sbjct: 46  FEVFDMLNGEELERVVKKHQPDIIVPEIEAIRTE--------RLYDFEKEGIQVVPSARA 97

Query: 91  MD-----KMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYVIKPLKGGSSLGIIV 143
           ++     K          G+               ++   I  P V+KPL   S  G  +
Sbjct: 98  VNFTMNRKAIRDLAAKELGLKTAKYFYAKTLDELKEAAAKIGFPCVVKPLMSSSGKGQSL 157

Query: 144 IKKDQSIPLDLLQSSSWNHGD--QLLIEQYVDGIE----LTCGVMGDASLDVTEIA-VPK 196
           +K    +        S + GD  +L+IE+++        LT       +L    I  V K
Sbjct: 158 VKSADELEHAWEYGCSGSRGDIRELIIEEFIKFDSEITLLTVTQKNGPTLFCPPIGHVQK 217

Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256
              Y               PA I     KE + +A    +A+   G+   +F     +  
Sbjct: 218 GGDY----------RESFQPAHIDPAHLKEAEEMAEKVTRALTGAGLWGVEFFLSHENG- 266

Query: 257 VFWLEINVQP---GM 268
           V++ E++ +P   GM
Sbjct: 267 VYFSELSPRPHDTGM 281


>gi|237714624|ref|ZP_04545105.1| phosphoribosylglycinamide formyltransferase 2 [Bacteroides sp. D1]
 gi|229445393|gb|EEO51184.1| phosphoribosylglycinamide formyltransferase 2 [Bacteroides sp. D1]
          Length = 388

 Score = 79.8 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 47/255 (18%), Positives = 86/255 (33%), Gaps = 36/255 (14%)

Query: 31  FKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
           F+V  +     +  V+   +PD+    +     E         L +       ++ SA +
Sbjct: 45  FEVFDMLNGEELERVVKKHQPDIIVPEIEAIRTE--------RLYDFEKEGIQVVPSARA 96

Query: 91  MD-----KMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYVIKPLKGGSSLGIIV 143
           ++     K          G+               ++   I  P V+KPL   S  G  +
Sbjct: 97  VNFTMNRKAIRDLAAKELGLKTAKYFYAKTLDELKEAAAKIGFPCVVKPLMSSSGKGQSL 156

Query: 144 IKKDQSIPLDLLQSSSWNHGD--QLLIEQYVDGIE----LTCGVMGDASLDVTEIA-VPK 196
           +K    +        S + GD  +L+IE+++        LT       +L    I  V K
Sbjct: 157 VKSADELEHAWEYGCSGSRGDIRELIIEEFIKFDSEITLLTVTQKNGPTLFCPPIGHVQK 216

Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256
              Y               PA I     KE + +A    +A+   G+   +F     +  
Sbjct: 217 GGDY----------RESFQPAHIDPAHLKEAEEMAEKVTRALTGAGLWGVEFFLSHENG- 265

Query: 257 VFWLEINVQP---GM 268
           V++ E++ +P   GM
Sbjct: 266 VYFSELSPRPHDTGM 280


>gi|119479793|ref|XP_001259925.1| carboxylase:pyruvate/acetyl-CoA/propionyl-CoA [Neosartorya fischeri
           NRRL 181]
 gi|119408079|gb|EAW18028.1| carboxylase:pyruvate/acetyl-CoA/propionyl-CoA [Neosartorya fischeri
           NRRL 181]
          Length = 644

 Score = 79.8 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 43/196 (21%), Positives = 78/196 (39%), Gaps = 11/196 (5%)

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ--HLISPPYVIKP 132
           + +     G      + DK+++K + +SCGVPV PS               +  P +IK 
Sbjct: 96  IGVTVIGPGAEILEQTGDKLQAKALATSCGVPVLPSHSAQSLDEIRAFVENVGYPVMIKA 155

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD--QLLIEQY-VDGIE-LTCGVMGDASLD 188
           + GG   GI +I + Q+  L  L + + +      + +E+  VDG   +   V+GD +  
Sbjct: 156 VDGGGGRGIRLIHQHQASELANLVARARSESPSQTVFVEKAAVDGFHHVEVQVLGDGTGT 215

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                V         ++          P+ +   I ++V   A    + I  R +   +F
Sbjct: 216 -----VHHLHERDCSVQRRFQKIVECAPSLLDRSIIEKVSEAALRIARTIRYRSLGTFEF 270

Query: 249 LFDPLSRKVFWLEINV 264
           L    +   ++LEIN 
Sbjct: 271 LVSERTSDFYFLEINP 286


>gi|302185199|ref|ZP_07261872.1| acetyl-CoA carboxylase biotin carboxylase subunit [Pseudomonas
           syringae pv. syringae 642]
          Length = 447

 Score = 79.8 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 77/222 (34%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         L  DK+ +K  +    VP  P    
Sbjct: 77  AIHPGYGFLAENADFAEQVEKSGFAFIGPKADTIRLMGDKVSAKDAMKLANVPTVPGSDG 136

Query: 112 LVNRFTMDSQHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
            +      +  +   +  P +IK   GG   G+ V+ +++ +         ++++W    
Sbjct: 137 PLPEDEAIALRIGREVGYPVIIKAAGGGGGRGMRVVHREEDLIEAASQTRAEAAAWFSNP 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+Y+     +   V+ D                   L+          PA  I   
Sbjct: 197 MVYLEKYLTNPRHVEVQVISDGQGQAI-----HLGDRDCSLQRRHQKVLEEAPAPFIDEK 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             ++V      A   IG RG    +FL+   + + +++E+N 
Sbjct: 252 AREDVLAACVKACIDIGYRGAGTFEFLY--ENGRFYFIEMNT 291


>gi|289643184|ref|ZP_06475312.1| Carbamoyl-phosphate synthase L chain ATP-binding [Frankia symbiont
           of Datisca glomerata]
 gi|289507015|gb|EFD27986.1| Carbamoyl-phosphate synthase L chain ATP-binding [Frankia symbiont
           of Datisca glomerata]
          Length = 448

 Score = 79.8 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 38/219 (17%), Positives = 79/219 (36%), Gaps = 17/219 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     + E   I +        +   DK  ++ ++S  G+P+ P    
Sbjct: 77  AIHPGYGFLSENPDFAEVCEEEGITFVGPPASVMSRLGDKASARSIMSDAGLPLLPGSRD 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN----HGDQ 165
            +       +    I  P +IK + GG   G+ V+ +  +      Q+ +         +
Sbjct: 137 ALEHADEAAEFAAGIGYPVIIKAVAGGGGRGMSVVHEPDAFLRAYSQTRASAQTVFRDGR 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           L +E+Y+     +   V+ DA  +V  +            K            ++P    
Sbjct: 197 LYVERYLASARHVEVQVLADAHGNVVHLGARDCSLQRRHQK----LVEETPAPRLPAQTV 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
           + +   A    +A G  G    +FL D    + +++E+N
Sbjct: 253 ERMCEAAVRGARAAGYVGAGTFEFLVDG-DGRFYFMEVN 290


>gi|255015285|ref|ZP_05287411.1| hypothetical protein B2_15356 [Bacteroides sp. 2_1_7]
          Length = 401

 Score = 79.8 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 35/178 (19%), Positives = 66/178 (37%), Gaps = 12/178 (6%)

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQHLIS-PPYVIKPLKGGSSLGIIVIK 145
           L  DK + K   S  GV       ++     +D+   I   P +IK      S GI    
Sbjct: 104 LCNDKSKMKLRFSKYGVNTAAFKQISSDEDLLDAIDKIGGYPVIIKATDLAGSRGIYKAN 163

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC-GVMGDASLDVTEIAVPKSDFYSYEL 204
            ++       ++ +    D +LIE+++ G E      + +         +P  D   Y+ 
Sbjct: 164 NEEEAFEGFYKAKNVTKVDYVLIEKFLQGREFGAQAFISNGE---ILFVMPHGDIL-YQA 219

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS-RSDFLFDPLSRKVFWLE 261
             +     +V P +    + +++   A  A +AIG    +   DF+       ++ LE
Sbjct: 220 DTAVPVGHYV-PYECSDVLREKMTEEARKAIKAIGLDDCAVNIDFI--EEDGVIYVLE 274


>gi|159043944|ref|YP_001532738.1| acetyl-CoA carboxylase biotin carboxylase subunit [Dinoroseobacter
           shibae DFL 12]
 gi|157911704|gb|ABV93137.1| acetyl-CoA carboxylase [Dinoroseobacter shibae DFL 12]
          Length = 448

 Score = 79.8 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 32/221 (14%), Positives = 73/221 (33%), Gaps = 20/221 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---- 109
            +H  +G   E+     I++   + +         +  DK+ +K+ + + GVP  P    
Sbjct: 77  AIHPGYGFLSENANFVQIVQDHGLTFIGPTAEHIRVMGDKITAKETMKNLGVPCVPGSDG 136

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS-----SSWNHGD 164
            +            I  P ++K   GG   G+ + K  + +      +     +++    
Sbjct: 137 GVPDLETARRVAGEIGYPVIVKATAGGGGRGMKLAKTAEDLDEAFQTARSEGKAAFG-NP 195

Query: 165 QLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            + +E+Y+     +   V GD       +            K             I  + 
Sbjct: 196 DVYLEKYLSTPRHIEVQVFGDGKGGAVHLGERDCSLQRRHQKVF----EEAPSPVIDAET 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              + +    A   I   G    +FL+   + + +++E+N 
Sbjct: 252 RARIGKTCAEAVARIDYAGAGTIEFLY--ENGEFYFIEMNT 290


>gi|315640765|ref|ZP_07895867.1| pyruvate carboxylase [Enterococcus italicus DSM 15952]
 gi|315483520|gb|EFU74014.1| pyruvate carboxylase [Enterococcus italicus DSM 15952]
          Length = 1162

 Score = 79.8 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 33/221 (14%), Positives = 75/221 (33%), Gaps = 20/221 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       E   I +    +    +  DK+++K+     G+   P    
Sbjct: 97  AIHPGYGFLSENLAFAKRCEEEGIIFIGPSVHHLDIFGDKIKAKEAAIDAGIQSIPGTDG 156

Query: 114 NRFTMDSQHLI----SPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGDQ 165
              ++D           P +IK   GG   G+ V    +           ++ +    D+
Sbjct: 157 PVESVDDVQAFGEQYGYPIMIKAALGGGGRGMRVAHNAKEAVEGYQRAKSEAKAAFGNDE 216

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDI 223
           + +E+Y+ D   +   ++GD   +V              ++        V P   +  + 
Sbjct: 217 IYVEKYIQDPKHIEVQILGDQYGNVI-----HLFERDCSVQRRHQKVVEVAPCVSMNDEQ 271

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +++   A    + +G       +FL        +++E+N 
Sbjct: 272 REKICSAAVQLMKHVGYINAGTVEFLV--EGDDFYFIEVNP 310


>gi|297620244|ref|YP_003708349.1| acetyl-CoA carboxylase, biotin carboxylase [Methanococcus voltae
           A3]
 gi|297379221|gb|ADI37376.1| acetyl-CoA carboxylase, biotin carboxylase [Methanococcus voltae
           A3]
          Length = 504

 Score = 79.8 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 81/221 (36%), Gaps = 22/221 (9%)

Query: 58  LHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
           +H  +G   E+           I +    I A  L   K+ +K+ +   GVPV P     
Sbjct: 78  IHPGYGFLSENSKFADECNKRNIEFIGPPIRAIELMGSKINAKKTMKKAGVPVLPGREEP 137

Query: 115 RFTMDSQHLI----SPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGDQ 165
                    I      P +IK   GG  +G+ V   +  +   +     +  S++     
Sbjct: 138 IEDEGEAAKIAKEIGYPVIIKASAGGGGIGMSVANDESELIDTIQSTKSIAQSAFG-DST 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDI 223
           + IE+Y++    +   ++ D   +V  +   +        K          P+ I   ++
Sbjct: 197 IFIEKYLEKPRHIEIQILADKHGNVIHLGDRECSIQRRHQK-----VIEEAPSPIMTPEL 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +++   A +A + I        +FL++    + ++LE+N 
Sbjct: 252 REKMGEAAKIAAKCIDYYSAGTVEFLYN--GGEFYFLEMNT 290


>gi|325922470|ref|ZP_08184236.1| biotin carboxylase ;acetyl-CoA carboxylase carboxyltransferase
           subunit alpha [Xanthomonas gardneri ATCC 19865]
 gi|325547043|gb|EGD18131.1| biotin carboxylase ;acetyl-CoA carboxylase carboxyltransferase
           subunit alpha [Xanthomonas gardneri ATCC 19865]
          Length = 455

 Score = 79.8 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 41/225 (18%), Positives = 82/225 (36%), Gaps = 27/225 (12%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+      +E     +         L  DK+ + + + + GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAERVEESGFIFIGPRADTIRLMGDKVEAIRAMKAAGVPCVPGSGG 136

Query: 111 -----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWN 161
                I+ N         I  P +IK   GG   G+ V+  + ++   +     ++ +  
Sbjct: 137 PLGDDIVAN---TKVAREIGYPVIIKAAGGGGGRGMRVVHSEAALKAAIETTKSEAKAAF 193

Query: 162 HGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-I 219
             DQ+ +E++++    +   V+ D       +            K          PA  I
Sbjct: 194 SNDQVYMEKFLENPRHVEIQVLADGQGGAIHLGERDCSMQRRHQK-----VVEEAPAPGI 248

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             ++  E+ ++   A   IG RG    +FLF     + +++E+N 
Sbjct: 249 TEELRNEIGKVCVDACIRIGYRGAGTFEFLF--EDGRFYFIEMNT 291


>gi|309389372|gb|ADO77252.1| pyruvate carboxylase [Halanaerobium praevalens DSM 2228]
          Length = 1143

 Score = 79.8 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 76/221 (34%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       E   I +            DK++SK +    GVP  P +  
Sbjct: 81  AIHPGYGFLAENPEFVRQCEEAGIKFIGPDAEVMEKLGDKIKSKILAQEFGVPTIPGLEK 140

Query: 114 NRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG----DQ 165
                D           P ++K   GG   G+ +++ D+ +      +          D 
Sbjct: 141 PIKKEDEIKKFAEKHGYPLMLKAAAGGGGRGMRIVRSDKELISQFRDAKEEARKAFGVDD 200

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDI 223
           + +E+Y++    +   ++GD   ++  +            K          PA  +    
Sbjct: 201 IFVERYLEAPKHIEVQILGDEQGNIVHLFERDCSIQRRHQK-----IVEFTPAVSLSDQK 255

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +E+ + A    +  G +     +FL D  +   +++E+N 
Sbjct: 256 REEILQDALKLCEGAGYKNAGTVEFLVDQANNH-YFIEVNP 295


>gi|254883766|ref|ZP_05256476.1| phosphoribosylglycinamide formyltransferase 2 [Bacteroides sp.
           4_3_47FAA]
 gi|254836559|gb|EET16868.1| phosphoribosylglycinamide formyltransferase 2 [Bacteroides sp.
           4_3_47FAA]
          Length = 389

 Score = 79.8 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 51/255 (20%), Positives = 88/255 (34%), Gaps = 36/255 (14%)

Query: 31  FKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
           F+V  +    ++  V+A  KPD+    +     E         L  +      ++ SA +
Sbjct: 46  FEVFSMLDGDALDAVVAKHKPDIIVPEIEAIRTE--------RLYHLEQEGIQVVPSARA 97

Query: 91  MD-----KMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYVIKPLKGGSSLGIIV 143
           ++     K          G+               ++   I  P V+KPL   S  G  +
Sbjct: 98  VNFTMNRKAIRDLAAKELGLKTAKYFYAKSLEELQEAAKEIGFPCVVKPLMSSSGKGQSL 157

Query: 144 IKKDQSIPLDLLQSSSWNHGD--QLLIEQYVDGIE----LTCGVMGDASLDVTEIA-VPK 196
           +K    +          + GD  +L+IE+++        LT       +L    I  V K
Sbjct: 158 VKSVDELEQAWHYGCEGSRGDIKELIIEEFIQFDSEITLLTVTQKNGPTLFCPPIGHVQK 217

Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256
              Y               PA I  +  KE QR+A     A+   GI   +F     +  
Sbjct: 218 GGDY----------RESFQPAHIDPEHLKEAQRMADKVTAALTGAGIWGVEFFLSHENG- 266

Query: 257 VFWLEINVQP---GM 268
           V++ E++ +P   GM
Sbjct: 267 VYFSELSPRPHDTGM 281


>gi|195145088|ref|XP_002013528.1| GL24188 [Drosophila persimilis]
 gi|194102471|gb|EDW24514.1| GL24188 [Drosophila persimilis]
          Length = 702

 Score = 79.8 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 35/199 (17%), Positives = 74/199 (37%), Gaps = 15/199 (7%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD----SQHLISPPYVIK 131
            + +      A      K  SK ++++ GVP+         + +       +I  P +IK
Sbjct: 127 GVIFMGPPSSAIRDMGIKSTSKAIMAAAGVPIINGYHGEDQSDECLQAEAKIIGFPLMIK 186

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQLLIEQYVD-GIELTCGVMGDAS 186
            ++GG   G+ + +K +     L  + + +        +L+E+YV     +   V  D  
Sbjct: 187 AVRGGGGKGMRIAEKPEDFLTALNSARNESQKSFGDSSVLLERYVRSPRHVEVQVFADQY 246

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISR 245
            D   +           ++          PA  +  ++ +E+   A  A +A+G  G   
Sbjct: 247 GDAVYLWE-----RDCSVQRRHQKIIEEAPAPGLSEELRRELGEAAVRAAKAVGYVGAGT 301

Query: 246 SDFLFDPLSRKVFWLEINV 264
            +F+ D       ++E+N 
Sbjct: 302 VEFILDKEDLSFHFMEMNT 320


>gi|119025272|ref|YP_909117.1| JadJ [Bifidobacterium adolescentis ATCC 15703]
 gi|118764856|dbj|BAF39035.1| JadJ [Bifidobacterium adolescentis ATCC 15703]
          Length = 634

 Score = 79.8 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 39/204 (19%), Positives = 81/204 (39%), Gaps = 15/204 (7%)

Query: 69  QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP----SILVNRFTMDSQHLI 124
           Q +L+     +      A     DK+ +++V +   VP  P    SI   R  +D  H  
Sbjct: 96  QKVLD-AGATWVGPNPKALVDLGDKITARRVATFAKVPPVPGISQSISDMRLLLDFAHTH 154

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG--DQLLIEQYVD-GIELTCGV 181
             P ++K   GG   GI ++  D  +    +   +   G  D+  +E+++D G  +    
Sbjct: 155 GYPLMLKRTDGGGGRGITLVHNDDELRGFYMNHDALQGGDLDEYFVERFIDKGRHVETQC 214

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGC 240
             D+  + T  +          ++  +       PA  +P  + ++++  +     A+  
Sbjct: 215 GRDSHGNFTVYST-----RDCSVQRRNQKLVEEAPASFLPDGVLEQLETYSRRLFDAVDY 269

Query: 241 RGISRSDFLFDPLSRKVFWLEINV 264
            G+   +F+      KV++LE+N 
Sbjct: 270 VGLGTCEFMVTEQ-GKVYFLEVNP 292


>gi|289675679|ref|ZP_06496569.1| acetyl-CoA carboxylase biotin carboxylase subunit [Pseudomonas
           syringae pv. syringae FF5]
 gi|330895629|gb|EGH27936.1| acetyl-CoA carboxylase biotin carboxylase subunit [Pseudomonas
           syringae pv. japonica str. M301072PT]
 gi|330938353|gb|EGH41981.1| acetyl-CoA carboxylase biotin carboxylase subunit [Pseudomonas
           syringae pv. pisi str. 1704B]
 gi|330976785|gb|EGH76822.1| acetyl-CoA carboxylase biotin carboxylase subunit [Pseudomonas
           syringae pv. aptata str. DSM 50252]
          Length = 447

 Score = 79.8 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 77/222 (34%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         L  DK+ +K  +    VP  P    
Sbjct: 77  AIHPGYGFLAENADFAEQVEKSGFAFIGPKADTIRLMGDKVSAKDAMKLANVPTVPGSDG 136

Query: 112 LVNRFTMDSQHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
            +      +  +   +  P +IK   GG   G+ V+ +++ +         ++++W    
Sbjct: 137 PLPEDEDTALRIGREVGYPVIIKAAGGGGGRGMRVVHREEDLIEAASQTRAEAAAWFSNP 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+Y+     +   V+ D                   L+          PA  I   
Sbjct: 197 MVYLEKYLTNPRHVEVQVISDGQGQAI-----HLGDRDCSLQRRHQKVLEEAPAPFIDEK 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             ++V      A   IG RG    +FL+   + + +++E+N 
Sbjct: 252 AREDVLAACVKACIDIGYRGAGTFEFLY--ENGRFYFIEMNT 291


>gi|291087546|ref|ZP_06346761.2| acetyl-CoA carboxylase, biotin carboxylase subunit [Clostridium sp.
           M62/1]
 gi|291074717|gb|EFE12081.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Clostridium sp.
           M62/1]
          Length = 453

 Score = 79.8 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 77/220 (35%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  FG   E+     + E   I +            +K  +++ +   GVPV P    
Sbjct: 80  AIHPGFGFLSENARFADLCEKCNIRFIGPSADIIHRMGNKSEARKTMIEAGVPVVPGSKE 139

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL----DLLQSSSWNHGDQ 165
            +      +     I  P +IK   GG   G+ V +  +          ++S      D 
Sbjct: 140 PVYSPEEALKMAKAIGFPVMIKASSGGGGKGMRVSRSAEDFEANFNQAQMESVKGFSDDT 199

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+Y++    +   ++ D   +V  +            K             I  ++ 
Sbjct: 200 MYIEKYIEQPRHIEFQILADEYGNVVHLGERDCSIQRRHQKVL----EEAPSEAISPELR 255

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K +   A  A +A+G       +FL D   ++ +++E+N 
Sbjct: 256 KAMGETAVKAAKAVGYVNAGTIEFLLDKH-KQFYFMEMNT 294


>gi|126658369|ref|ZP_01729518.1| carbamoyl-phosphate synthase large subunit [Cyanothece sp. CCY0110]
 gi|126620301|gb|EAZ91021.1| carbamoyl-phosphate synthase large subunit [Cyanothece sp. CCY0110]
          Length = 1081

 Score = 79.8 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 53/279 (18%), Positives = 106/279 (37%), Gaps = 36/279 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ + +                     V  V+A  +PD    
Sbjct: 29  SGTQACKALREEGYEVVLVNSNPASIMTDPEMANRTYIEPLTPDMVEKVIAKERPDALLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G    +  V      +L+   +    + + A  ++ D+   K  ++  GVPVCPS  
Sbjct: 89  TMGGQTALNVAVSLAKSGVLDKYNVELIGAKLPAIEMAEDRELFKDAMAKIGVPVCPSGI 148

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
              +    +  + + S P +I+P       G  +    +            +   Q+L+E
Sbjct: 149 ASTLEEAQVIGKEIGSYPLIIRPAFTLGGTGGGIAYNQEEFEEMAQFGIDASPVSQILVE 208

Query: 170 QYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKE 226
           + + G  E    VM D + +V  I   ++    ++       +S  V PA+ +    Y+ 
Sbjct: 209 KSLLGWKEYELEVMRDLADNVVIICSIEN----FDPMGVHTGDSITVAPAQTLTDKEYQR 264

Query: 227 VQRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           ++  +    + IG   G S   F  +P + +V  +E+N 
Sbjct: 265 LRDYSQAIIREIGVETGGSNIQFSVNPTNGEVIVIEMNP 303



 Score = 50.5 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/205 (12%), Positives = 77/205 (37%), Gaps = 13/205 (6%)

Query: 68  VQAILELLEIPYT----HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQ 121
           +Q  L+  E P       +   +   + D+ R ++++    +   P+ +   +   +   
Sbjct: 653 LQTYLDSSECPVQTKIWGTSPDSIDTAEDRERFEKILHDLDIKQPPNGISRSYEESLRVS 712

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCG 180
             I  P V++P        + ++  D+ +   +  +        +LI+++++  IE+   
Sbjct: 713 SRIGYPVVVRPSYVLGGRAMEIVYSDEELERYMTYAVQVEPDHPILIDKFLENAIEVDVD 772

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIG 239
            + D +  V    + +   +  +    S +S   +P   +   + + ++        ++ 
Sbjct: 773 ALCDTTGKVVIGGIME---HIEQAGVHSGDSACSVPFTTLSNSVIETIRTWTAALANSLK 829

Query: 240 CRGISRSDFLFDPLSRKVFWLEINV 264
             G+   +  +     +V+ LE N 
Sbjct: 830 VVGL--MNIQYAVQGEQVYILEANP 852


>gi|148657021|ref|YP_001277226.1| biotin carboxylation domain-containing protein [Roseiflexus sp.
           RS-1]
 gi|148569131|gb|ABQ91276.1| biotin carboxylase domain protein [Roseiflexus sp. RS-1]
          Length = 493

 Score = 79.8 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 36/237 (15%), Positives = 74/237 (31%), Gaps = 19/237 (8%)

Query: 42  VGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQ 98
               L  +  D   + +H  +G   E        E   I +      A A   DK+ + +
Sbjct: 59  DAPALVQIARDCGADAIHPGYGFLAEHDEFARACEEAGIAFIGPSSTALARVRDKIATLE 118

Query: 99  VVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIKPLKGGSSLGIIVIKKDQSIP- 151
            V + G  V           + + L      +  P V+K   GG   G  ++++   +  
Sbjct: 119 TVRAAGFAVPRHSPQAYRASEWEALRAAAGRLGYPLVLKSYSGGHGHGTRLVREPTHLES 178

Query: 152 ----LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYS 207
                     ++       L E ++    L   ++GD   ++  +            K  
Sbjct: 179 IAQHAHSAALTASGDDRLYLEEAFLPARYLEVQIVGDRYGNLVHLGERDGTIQHNHHK-- 236

Query: 208 SLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
                      +     +++ R A    + +GC  I   +F+ D     V++ E+  
Sbjct: 237 --VVAESPAPYLTDAQREDLWRQALAIGRLLGCSNICTIEFVLDAQ-GHVYFTEVKT 290


>gi|83589733|ref|YP_429742.1| carbamoyl-phosphate synthase large subunit [Moorella thermoacetica
           ATCC 39073]
 gi|83572647|gb|ABC19199.1| carbamoyl-phosphate synthase large subunit [Moorella thermoacetica
           ATCC 39073]
          Length = 1063

 Score = 79.8 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 47/295 (15%), Positives = 101/295 (34%), Gaps = 39/295 (13%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLV-----QA 70
           AL  AG     I         D D S  L    L P+   NVL     E G++     Q 
Sbjct: 572 ALRRAGVHPIMINNNPETVSTDFDTSDRLYFEPLTPENVLNVLEKEQPE-GVIVQFGGQT 630

Query: 71  ILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--FTMDSQH 122
            + L         P   + ++    + D+ +   +++  G+P             +    
Sbjct: 631 AINLAQTVAGAGFPVLGTAVVDIDRAEDREKFDALLNELGIPRPRGGTATSVGEVVKIAK 690

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            +  P +++P        + ++  +  +      +        +L+++Y+ G E+    +
Sbjct: 691 ELGFPVLVRPSYVLGGRAMEIVHSEGELLEYATTAVRVAPEHPVLVDKYLPGTEVEVDAV 750

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCR 241
            D    +    +   +           +S  + PA  +P  + +++        +A+  R
Sbjct: 751 SDGETVLIPGIMEHVERAGVHS----GDSIAIYPAHSLPPGVTEKIVAYTEQLARALRVR 806

Query: 242 GISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEMAAYA----GYSFRE 287
           G+    F+      +V+ LE+N       P ++ ++  P +A       G S  E
Sbjct: 807 GLLNIQFVIHR--GEVYVLEVNPRSSRTVPYLSKITGVPMVALATNVMLGKSLPE 859



 Score = 74.4 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 55/287 (19%), Positives = 116/287 (40%), Gaps = 35/287 (12%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQID-------VDRS--------------VGLV 45
           G ++E + +   G     AL++ G +V  ++        DR               V  +
Sbjct: 11  GQAAEFDYA---GTQACRALKEEGMEVVLVNSNPATIMTDRDMADRVYLEPLTLDFVAKI 67

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   +PD     L G  G +  ++     +LE   +    + + A   + D+ + K+++ 
Sbjct: 68  VRQERPDGLIPTLGGQMGLNLAMELAEAGVLEETGVELLGTPLTAIQRAEDREQFKEMML 127

Query: 102 SCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
           +   PV  S +VNR    ++    I  P +++P       G  V   +  +    L+   
Sbjct: 128 AIDEPVPESRIVNRVEEALEFAREIGYPVIVRPAYTLGGTGGGVAHNEAELRSIALKGLK 187

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   Q+L+E+ V G  E+   V+ D++ +   +   ++      +   + +S  V P++
Sbjct: 188 LSLIQQVLVERSVAGWKEIEYEVIRDSNDNCITVCNMEN---IDPVGIHTGDSIVVAPSQ 244

Query: 219 -IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +    Y  ++R A    +A+G  G     F  DP S + + +E+N 
Sbjct: 245 TLSDREYHLLRRSALKIIRALGIEGGCNVQFALDPGSMRYYVIEVNP 291


>gi|330685486|gb|EGG97139.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus
           epidermidis VCU121]
          Length = 1057

 Score = 79.8 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 53/315 (16%), Positives = 118/315 (37%), Gaps = 39/315 (12%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQID---------------------VDRSVGLV 45
           G ++E + +   G     AL++ G++V  ++                         +  +
Sbjct: 21  GQAAEFDYA---GTQACLALKEEGYRVILVNSNPATIMTDKEIADKVYIEPLTHDFIARI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   +PD     L G  G +  +Q     +L    +    + + +   + D+   + +++
Sbjct: 78  IRKEQPDALLPTLGGQTGLNMAIQLHDSGVLAANNVKLLGTELESIQQAEDRELFRTLMN 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
              VPV  S +VN        +  +  P +++P       G  +   D  +   +     
Sbjct: 138 DLDVPVPESDIVNTVEQAFKFKEEVGYPLIVRPAFTMGGTGGGICYNDDDLKEVVTNGLH 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
           ++   Q LIE+ + G  E+   VM D + +   I V   +     +   + +S  V P++
Sbjct: 198 YSPATQCLIEKSIAGFKEIEYEVMRDKNDNA--IVVCNMENID-PVGIHTGDSIVVAPSQ 254

Query: 219 -IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
            +    Y+ ++ ++    +A+G  G        DP S   + +E+N  P ++  S     
Sbjct: 255 TLSDVEYQMLRDVSLKVIRALGIEGGCNVQLALDPDSFNYYIIEVN--PRVSRSS--ALA 310

Query: 278 AAYAGYSFRELLLWM 292
           +   GY   +L   +
Sbjct: 311 SKATGYPIAKLAAKI 325



 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 23/192 (11%), Positives = 69/192 (35%), Gaps = 9/192 (4%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPL 133
            +    + +     + D+   + ++ +  VP          +  +++   I  P V++P 
Sbjct: 650 GVQILGTSLEDLNRAEDRKEFEALLHTIDVPQPQGKTATSPKEALENARNIGYPVVVRPS 709

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
                  + ++  D+ +   + Q+   +    +L+++Y+ G E+    + D    +    
Sbjct: 710 YVLGGRAMEIVDNDKELENYMTQAVKASPEHPVLVDRYLTGKEIEVDAISDGETVIIPGI 769

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
           +   +           +S  V P + +  +  + ++       + +   G+    F+   
Sbjct: 770 MEHIERAGVHS----GDSIAVYPPQTLSQEEIETLEDYTIRLAKGLNIVGLINIQFVIAH 825

Query: 253 LSRKVFWLEINV 264
               V+ LE+N 
Sbjct: 826 DG--VYVLEVNP 835


>gi|258545416|ref|ZP_05705650.1| carbamoyl-phosphate synthase, large subunit [Cardiobacterium
           hominis ATCC 15826]
 gi|258519385|gb|EEV88244.1| carbamoyl-phosphate synthase, large subunit [Cardiobacterium
           hominis ATCC 15826]
          Length = 1123

 Score = 79.8 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 46/278 (16%), Positives = 99/278 (35%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL   GF+V  +         D +            ++V  ++A  +PD    
Sbjct: 86  SGAQACKALRSEGFRVILVNSNPATIMTDPEMADATYIEPIQWQTVEKIIAKERPDAILP 145

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      +LE   +    + + A   + D+   K+ +S  G+    S  
Sbjct: 146 TMGGQTALNCALDLAKHGVLERYGVALIGASVQAIETAEDRDLFKKAMSEIGLASAKSFA 205

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           V+       +Q  +  P +I+P       G  +                 +   ++L+E+
Sbjct: 206 VHSLEEARAAQAELGFPVIIRPSFTLGGSGGGIAYNRDEFEQITAHGLELSPTHEVLLEE 265

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + +   +   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 266 SLLGWKEFEMEVVRDQADNAIIVCAIEN----FDPMGVHTGDSITVAPAQTLTDKEYQAL 321

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P   ++  +E+N 
Sbjct: 322 RDASIAILRKIGVETGGSNVQFAINPRDGRIIVIEMNP 359



 Score = 65.1 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 29/196 (14%), Positives = 77/196 (39%), Gaps = 8/196 (4%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTMDSQHLISPPYV 129
           LE   +P   +   A   + D+ R + ++    +   P+         +     I  P V
Sbjct: 705 LEAAGVPIIGTPPDAIDRAEDRERFQHLIDELKLLQPPNRTASDTAEALAKAQEIGYPLV 764

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  D  +   + ++   +    +L+++++ D IE+   V+ D    
Sbjct: 765 VRPSYVLGGRAMDIVHNDADLENYMKEALHVSPDAPILLDRFLDDAIEVDIDVICDGETV 824

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           +    +   +       +S  ++  + P ++   I ++++  A    +A+G  G+  + F
Sbjct: 825 ILGGLMEHIEQAGV---HSGDSACSLPPYRLAPAICEQIEAQAKALARALGVVGLMNAQF 881

Query: 249 LFDPLSRKVFWLEINV 264
                   ++ LE+N 
Sbjct: 882 AV--KGDAIYILEVNP 895


>gi|169831178|ref|YP_001717160.1| acetyl-CoA carboxylase, biotin carboxylase [Candidatus Desulforudis
           audaxviator MP104C]
 gi|169638022|gb|ACA59528.1| acetyl-CoA carboxylase, biotin carboxylase [Candidatus Desulforudis
           audaxviator MP104C]
          Length = 446

 Score = 79.8 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 81/221 (36%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     + E   + +    + A A    K  + ++V   GVP+ P    
Sbjct: 76  AIHPGYGFLAENAHFAEVCESCGLTFVGPPVEAIAKMGAKAEALELVRKMGVPIVPGSGG 135

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS-----SWNHGD 164
            +      +     I  P +IK   GG   G+ V      +   L  +      ++  GD
Sbjct: 136 AVNGLDHALAVAEEIGYPVLIKASAGGGGRGMRVAHNKSDLSRALQAAQSEAQNAFGSGD 195

Query: 165 QLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            + +E+Y++    +   V GD   ++  +            K             +  ++
Sbjct: 196 -VYLEKYIEEPRHIEIQVFGDRHGNILSLGERDCSIQRRNQKLL----EEAPSTALTPEL 250

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +++   A  A Q++G       +FL D  +R  +++E+N 
Sbjct: 251 RRQMGDAAVRAAQSVGYYNSGTVEFLLDRENR-FYFIEMNT 290


>gi|68164593|gb|AAY87322.1| predicted propionyl-CoA carboxylase alpha subunit [uncultured
           bacterium BAC17H8]
          Length = 665

 Score = 79.8 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 79/220 (35%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  FG   E+      +E   + +   G  A A+  DK+ SK +  S GV + P  L 
Sbjct: 83  AIHPGFGFLSENADFVNDVEAAGLAFIGPGPKAIAVMGDKIESKALAESAGVSIVPGTLG 142

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSWNHGDQ 165
               +D    +   I  P ++K   GG   G+ VI+    +       + ++ +     +
Sbjct: 143 AVEDVDTALAAAKKIGYPVMVKASAGGGGKGMRVIESADELADGMRAAMSEAQTAFGDSR 202

Query: 166 LLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE++ V    +   ++ D   +V  +   +        K             I  +  
Sbjct: 203 VFIEKFVVQPRHIEIQLLADQHGNVVYVGERECSIQRRHQK----VIEEAPSPFISPETR 258

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +   A    +A+  R     +F      +  ++LE+N 
Sbjct: 259 AAMGSQAVDLAKAVDYRSAGTVEF-VVGADQDFYFLEMNT 297


>gi|239636317|ref|ZP_04677319.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus warneri
           L37603]
 gi|239597672|gb|EEQ80167.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus warneri
           L37603]
          Length = 1057

 Score = 79.8 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 53/315 (16%), Positives = 118/315 (37%), Gaps = 39/315 (12%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQID---------------------VDRSVGLV 45
           G ++E + +   G     AL++ G++V  ++                         +  +
Sbjct: 21  GQAAEFDYA---GTQACLALKEEGYRVILVNSNPATIMTDKEIADKVYIEPLTHDFIARI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   +PD     L G  G +  +Q     +L    +    + + +   + D+   + +++
Sbjct: 78  IRKEQPDALLPTLGGQTGLNMAIQLHDSGVLAANNVKLLGTELESIQQAEDRELFRTLMN 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
              VPV  S +VN        +  +  P +++P       G  +   D  +   +     
Sbjct: 138 DLDVPVPESDIVNTVEQAFKFKEEVGYPLIVRPAFTMGGTGGGICYNDDDLKEVVTNGLH 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
           ++   Q LIE+ + G  E+   VM D + +   I V   +     +   + +S  V P++
Sbjct: 198 YSPATQCLIEKSIAGFKEIEYEVMRDKNDNA--IVVCNMENID-PVGIHTGDSIVVAPSQ 254

Query: 219 -IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
            +    Y+ ++ ++    +A+G  G        DP S   + +E+N  P ++  S     
Sbjct: 255 TLSDVEYQMLRDVSLKVIRALGIEGGCNVQLALDPDSFNYYIIEVN--PRVSRSS--ALA 310

Query: 278 AAYAGYSFRELLLWM 292
           +   GY   +L   +
Sbjct: 311 SKATGYPIAKLAAKI 325



 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 23/192 (11%), Positives = 69/192 (35%), Gaps = 9/192 (4%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPL 133
            +    + +     + D+   + ++ +  VP          +  +++   I  P V++P 
Sbjct: 650 GVQILGTSLEDLNRAEDRKEFEALLHTIDVPQPQGKTATSPKEALENARNIGYPVVVRPS 709

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
                  + ++  D+ +   + Q+   +    +L+++Y+ G E+    + D    +    
Sbjct: 710 YVLGGRAMEIVDNDKELENYMTQAVKASPEHPVLVDRYLTGKEIEVDAISDGETVIIPGI 769

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
           +   +           +S  V P + +  +  + ++       + +   G+    F+   
Sbjct: 770 MEHIERAGVHS----GDSIAVYPPQTLSQEEIETLEDYTIRLAKGLNIVGLINIQFVIAH 825

Query: 253 LSRKVFWLEINV 264
               V+ LE+N 
Sbjct: 826 DG--VYVLEVNP 835


>gi|160884427|ref|ZP_02065430.1| hypothetical protein BACOVA_02411 [Bacteroides ovatus ATCC 8483]
 gi|156110166|gb|EDO11911.1| hypothetical protein BACOVA_02411 [Bacteroides ovatus ATCC 8483]
          Length = 389

 Score = 79.8 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 47/255 (18%), Positives = 84/255 (32%), Gaps = 36/255 (14%)

Query: 31  FKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
           F+V  +     +  V+    PD+    +     E         L +       ++ SA +
Sbjct: 46  FEVFDMLNGEELERVVKKHHPDIIVPEIEAIRTE--------RLYDFEKEGIQVVPSARA 97

Query: 91  MD-----KMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYVIKPLKGGSSLGIIV 143
           ++     K          G+               ++   I  P V+KPL   S  G  +
Sbjct: 98  VNFTMNRKAIRDLAAQELGLKTAKYFYAKTLEELKEAADKIGFPCVVKPLMSSSGKGQSL 157

Query: 144 IKKDQSIPLDLLQSSSWNHGD--QLLIEQYVDGIE----LTCGVMGDASLDVTEIA-VPK 196
           +K    +        S + GD  +L+IE+++        LT       +L    I  V K
Sbjct: 158 VKSADELEHAWEYGCSGSRGDIRELIIEEFIKFDSEITLLTVTQKNGPTLFCPPIGHVQK 217

Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256
              Y               PA I     KE + +A    +A+   G+   +F        
Sbjct: 218 GGDY----------RESFQPAHIDPAHLKEAEEMAEKVTRALTGAGLWGVEFFLS-HDNG 266

Query: 257 VFWLEINVQP---GM 268
           V++ E++ +P   GM
Sbjct: 267 VYFSELSPRPHDTGM 281


>gi|315646059|ref|ZP_07899180.1| carbamoyl-phosphate synthase, large subunit [Paenibacillus vortex
           V453]
 gi|315278820|gb|EFU42134.1| carbamoyl-phosphate synthase, large subunit [Paenibacillus vortex
           V453]
          Length = 1068

 Score = 79.8 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 50/286 (17%), Positives = 107/286 (37%), Gaps = 33/286 (11%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQIDVDRS---------------------VGLV 45
           G ++E + +   G     AL++ G +V  I+ + +                     V  +
Sbjct: 21  GQAAEFDYA---GTQACQALKEEGIEVVLINSNPATIMTDTNMADKVYIEPITLDFVTQI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   +PD     L G  G +  V+     ILE   +    + + +   + D+   ++++ 
Sbjct: 78  IRQERPDGLLPTLGGQTGLNMAVELARAGILEQENVKLLGTQLESIEKAEDRDLFRELMR 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
               PV  S +V      MD    I  P +++P       G  +   ++ +   +     
Sbjct: 138 ELEQPVPESTIVTTLEEAMDFADEIGYPLIVRPAYTLGGTGGGICATEEELRETVSSGLR 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
           ++   Q LIE+ + G  E+   VM DA+ +   I V   + +     ++  +        
Sbjct: 198 YSPITQCLIEKSIAGMKEVEYEVMRDANDN--CIVVCNMENFDPVGVHTGDSIVVAPSQT 255

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +    Y+ ++  +    +A+   G     F  DP S + + +E+N 
Sbjct: 256 LSDREYQMLRSASLKIIRALNIEGGCNVQFALDPNSYQYYVIEVNP 301



 Score = 71.3 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 28/225 (12%), Positives = 82/225 (36%), Gaps = 13/225 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           L    +    + + +   + D+ + + ++S   +       V      +++   +  P +
Sbjct: 654 LSKAGVKILGTSLESIDEAEDRKKFEALLSRLDIAQPKGKTVISVDDAVETAQSLGYPVL 713

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           ++P        + ++  D  +   + ++   N    +LI++Y+ G E+    + D    +
Sbjct: 714 VRPSYVLGGRAMEIVYSDSELLSYMKEAVKINPDHPVLIDRYMMGKEVEVDAICDGDTVL 773

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               +   +           +S  V P + +  D+ +++  +     + +  RG+    F
Sbjct: 774 IPGIMEHVERAGVHS----GDSIAVYPPQYLSQDLKEKITEITIKIAKELNTRGLVNIQF 829

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +      +V+ +E+N +   T     P ++   G     L    +
Sbjct: 830 VIYK--NEVYVIEVNPRSSRT----VPFLSKVTGIPMANLATQAI 868


>gi|304312301|ref|YP_003811899.1| Acetyl-CoA carboxylase,biotin carboxylase subunit [gamma
           proteobacterium HdN1]
 gi|301798034|emb|CBL46256.1| Acetyl-CoA carboxylase,biotin carboxylase subunit [gamma
           proteobacterium HdN1]
          Length = 450

 Score = 79.8 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 39/222 (17%), Positives = 82/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      ++     +         L  +K+ +   + + GVP  P    
Sbjct: 77  AIHPGYGFLAENADFAERVKDSGFIFIGPEAETIRLMGNKVSAIHAMKAAGVPTVPGSDG 136

Query: 114 NRFTMDSQHL-----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
                D++ L     +  P +IK   GG   G+ V+  +  +   +     ++ +     
Sbjct: 137 PLGDDDNETLKTGRRVGYPVIIKAAAGGGGRGMRVVHSEDELLKAVSLTRAEARAAFGDA 196

Query: 165 QLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+++     +   V+GD   +   +           L+          PA  IP  
Sbjct: 197 SVYMEKFLTTPRHVEIQVLGDGQGNAVYL-----GDRDCSLQRRHQKVVEEAPAPGIPDA 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + KEV      A +AI  RG    +FL+   + + +++E+N 
Sbjct: 252 LRKEVGERCVEACKAINYRGAGTFEFLY--ENEQFYFIEMNT 291


>gi|81428566|ref|YP_395566.1| carbamoyl-phosphate synthase, catalytic subunit [Lactobacillus
           sakei subsp. sakei 23K]
 gi|123564265|sp|Q38X24|CARB_LACSS RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|78610208|emb|CAI55257.1| Carbamoyl-phosphate synthase, catalytic subunit [Lactobacillus
           sakei subsp. sakei 23K]
          Length = 1060

 Score = 79.8 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 46/294 (15%), Positives = 99/294 (33%), Gaps = 32/294 (10%)

Query: 22  CASALEDAGFKVSQ-------IDVDRSVGLVLAHLKPDL--AFNVLHGNFGEDGLVQ--- 69
           C  A++ AG++          +  D S+   L      L    NV+     E  +VQ   
Sbjct: 577 CVQAIQKAGYEAIIMNSNPETVSTDFSISDKLYFEPLTLEDVLNVVELEKPEGVIVQFGG 636

Query: 70  -------AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--FTMDS 120
                  A LE   +    + +     + D+    Q++    +P             +  
Sbjct: 637 QTAINLAAPLEENGVKILGTSVANLDRAEDRDLFDQLIQELNIPQPVGKTATNAPDALTI 696

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +I+P        + ++   + +   + ++   +    +LI++Y+ G E    
Sbjct: 697 ATEIGYPVLIRPSFVLGGRAMEIVHTPEDLTHYMQEAVKVSDEHPVLIDRYLMGKECEVD 756

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIG 239
            + D      E+ +P    +       S +S  V P   +  D    +         A+ 
Sbjct: 757 AICDGQ----EVLIPGIMEHIERAGVHSGDSMAVYPPQNLTEDQKAAIIDYTTKLCLALD 812

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           C G+    F+    + +V+ +E+N +   T     P ++        +L   ++
Sbjct: 813 CHGLLNIQFII--QNDEVYVIEVNPRASRT----VPFLSKVTQIPMAQLATQLI 860



 Score = 70.2 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 50/287 (17%), Positives = 106/287 (36%), Gaps = 35/287 (12%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQID-------VDRSVG--------------LV 45
           G ++E + S   G     AL++ G++V  I+        D++V                +
Sbjct: 21  GQAAEFDYS---GTQACLALKEEGYQVVLINSNPATIMTDKTVADTVYIEPITLDFVTQI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           L    PD     L G  G +  ++     IL  L I    + + A   + D+   K +++
Sbjct: 78  LRKELPDAILPTLGGQTGLNMALELANCGILAELNIELLGTKLSAIDQAEDRELFKNLMN 137

Query: 102 SCGVPVCPSILVNRFTMDSQHLI---SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS 158
               P+  S + +    D+Q  +     P +I+P       G  + +    +   +    
Sbjct: 138 QLNEPIPESAIAHSLD-DAQEFVKQNGFPVIIRPAFTLGGTGGGIAENAGQLKTIVKNGI 196

Query: 159 SWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
           + +   Q+L+EQ + G  E+   VM D + +   + V   + +     ++  +       
Sbjct: 197 ALSPVGQVLVEQSIAGYKEIEFEVMRDRNDNA--LVVCNMENFDPVGIHTGDSIVFAPVQ 254

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +     + ++  +    +A+   G        DP S + F +E+N 
Sbjct: 255 TLSDREVQMLRDASLKIIRALKIEGGCNVQLALDPNSERYFIIEVNP 301


>gi|87310369|ref|ZP_01092499.1| pyruvate carboxylase [Blastopirellula marina DSM 3645]
 gi|87286868|gb|EAQ78772.1| pyruvate carboxylase [Blastopirellula marina DSM 3645]
          Length = 1147

 Score = 79.8 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 40/241 (16%), Positives = 85/241 (35%), Gaps = 19/241 (7%)

Query: 35  QIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKM 94
            +D+D  + L   H   D      +G   E+  +    E   I +    +       DK 
Sbjct: 63  YLDIDSVIRLCREH-NIDAVHPG-YGFMSENPELARACEENGIIFVGPSVDCLERLGDKT 120

Query: 95  RSKQVVSSCGVPV----CPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150
            ++ +     VPV      +I            +  P ++K  KGG   G+ V+++    
Sbjct: 121 AARAIAEQANVPVLSGSPKAISTADEGRKLAEKLGFPIILKAAKGGGGRGMRVVREAAEF 180

Query: 151 PLDLLQS-----SSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYEL 204
                 +     S++     + +E+Y++    +   +MGD   D+              +
Sbjct: 181 DASFDSATRESQSAFG-SPDIFVEKYIEQARHIEVQLMGDRHGDLV-----HLFERDCSV 234

Query: 205 KYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
           +        + PA  +  ++   +   A    + +G +     +FL D  S + F++E+N
Sbjct: 235 QRRHQKVVEIAPAPNLLPEVRIALCEAAIKIGKEVGYQNAGTVEFLVDKKSNQYFFIEVN 294

Query: 264 V 264
            
Sbjct: 295 P 295


>gi|328461948|gb|EGF34149.1| carbamoyl phosphate synthase large subunit [Lactobacillus rhamnosus
           MTCC 5462]
          Length = 313

 Score = 79.8 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 30/195 (15%), Positives = 67/195 (34%), Gaps = 15/195 (7%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQHLISPPYVIKPL 133
            I    + +     + D+    QV+    +P             +     I  P +++P 
Sbjct: 21  GIKILGTSVADLNRAEDRDLFDQVIKELKLPQPEGGTATDKDGALAVADKIGYPVLVRPS 80

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS---LDVT 190
                  + ++     +   + ++ S +H   +LI+ Y+ G E     + D     L   
Sbjct: 81  YVLGGRAMEIVHDADELASYIDRAVSVSHDHPVLIDHYLVGKECEVDCISDGETVVLPGI 140

Query: 191 EIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
              + ++  +S        +S  V P +    DI  ++        +A+ C G+    F+
Sbjct: 141 MEHIERAGIHS-------GDSMAVYPPQTFSQDIIDQITDATIKLSRALNCIGLMNVQFI 193

Query: 250 FDPLSRKVFWLEINV 264
                 K + +E+N 
Sbjct: 194 IHQ--GKAYVIEVNP 206


>gi|269797813|ref|YP_003311713.1| pyruvate carboxylase [Veillonella parvula DSM 2008]
 gi|269094442|gb|ACZ24433.1| pyruvate carboxylase [Veillonella parvula DSM 2008]
          Length = 1148

 Score = 79.8 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 44/278 (15%), Positives = 96/278 (34%), Gaps = 28/278 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59
           +A+     S E  +SL   +A  + L   G K     +D   +  +      D     +H
Sbjct: 31  VAI----YSKEDTLSLHRNQADEAYLVGEGKKPVDAYLDIEDIIRIAKEHDID----AIH 82

Query: 60  GNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS---ILV 113
             +G   E+       E   I +    I    +  DK+ +++      +P+ P     L 
Sbjct: 83  PGYGFLSENEGFARRCEEEGIIFIGPKIKHLNMFGDKVNAREQAKLAKIPMIPGSDGALK 142

Query: 114 NRFTMDS-QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQLLI 168
           +   ++        P +IK + GG   G+  +   + +         ++ +    D + +
Sbjct: 143 DYAQLEEFADTHGFPLMIKAVNGGGGRGMREVHHKEDLRDAYDRAKSEAKAAFGDDDVYV 202

Query: 169 EQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKE 226
           E+ + +   +   ++GD   +V              ++        + PA  + L+  K 
Sbjct: 203 EKLIVEPKHIEVQILGDEHGNVV-----HLHERDCSVQRRHQKVVEMAPAFALSLETRKA 257

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           V   A    + +G       +FL        +++E+N 
Sbjct: 258 VCDAAVKIMKNVGYVNAGTVEFLVTA-DGSFYFIEVNP 294


>gi|254523331|ref|ZP_05135386.1| biotin carboxylase [Stenotrophomonas sp. SKA14]
 gi|219720922|gb|EED39447.1| biotin carboxylase [Stenotrophomonas sp. SKA14]
          Length = 660

 Score = 79.8 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 82/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+           I +      A     DK  +K +++  GVP+ P    
Sbjct: 77  AIHPGYGFLSENADFADACAAAGITFIGPPASAIRAMGDKSAAKALMAKAGVPLTPGYHG 136

Query: 114 NRFT----MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL-----QSSSWNHGD 164
           ++            I  P +IK   GG   G+  +++ +     L       +S++   D
Sbjct: 137 DQQEPAFLRAQADAIGYPVLIKASAGGGGKGMRKVERSEDFVDALASCQREAASAFG-ND 195

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            +L+E+YV+    +   V GD+  +   +           ++          PA  +  +
Sbjct: 196 HVLVEKYVERPRHIEIQVFGDSHGEAVYL-----FERDCSVQRRHQKVLEEAPAPGMSAE 250

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
               + + A  A +A+G  G    +F+  P     +++E+N 
Sbjct: 251 RRAAMGQAAVDAARAVGYVGAGTVEFIAGP-DGDFYFMEMNT 291


>gi|71736401|ref|YP_276560.1| acetyl-CoA carboxylase biotin carboxylase subunit [Pseudomonas
           syringae pv. phaseolicola 1448A]
 gi|257483336|ref|ZP_05637377.1| acetyl-CoA carboxylase biotin carboxylase subunit [Pseudomonas
           syringae pv. tabaci ATCC 11528]
 gi|289625302|ref|ZP_06458256.1| acetyl-CoA carboxylase biotin carboxylase subunit [Pseudomonas
           syringae pv. aesculi str. NCPPB3681]
 gi|289647827|ref|ZP_06479170.1| acetyl-CoA carboxylase biotin carboxylase subunit [Pseudomonas
           syringae pv. aesculi str. 2250]
 gi|298488949|ref|ZP_07006972.1| Biotin carboxylase of acetyl-CoA carboxylase [Pseudomonas
           savastanoi pv. savastanoi NCPPB 3335]
 gi|71556954|gb|AAZ36165.1| acetyl-CoA carboxylase, biotin carboxylase [Pseudomonas syringae
           pv. phaseolicola 1448A]
 gi|298156447|gb|EFH97544.1| Biotin carboxylase of acetyl-CoA carboxylase [Pseudomonas
           savastanoi pv. savastanoi NCPPB 3335]
 gi|320322740|gb|EFW78833.1| acetyl-CoA carboxylase biotin carboxylase subunit [Pseudomonas
           syringae pv. glycinea str. B076]
 gi|320330475|gb|EFW86454.1| acetyl-CoA carboxylase biotin carboxylase subunit [Pseudomonas
           syringae pv. glycinea str. race 4]
 gi|330867136|gb|EGH01845.1| acetyl-CoA carboxylase biotin carboxylase subunit [Pseudomonas
           syringae pv. aesculi str. 0893_23]
 gi|330871024|gb|EGH05733.1| acetyl-CoA carboxylase biotin carboxylase subunit [Pseudomonas
           syringae pv. aesculi str. 0893_23]
 gi|330873872|gb|EGH08021.1| acetyl-CoA carboxylase biotin carboxylase subunit [Pseudomonas
           syringae pv. glycinea str. race 4]
 gi|330960005|gb|EGH60265.1| acetyl-CoA carboxylase biotin carboxylase subunit [Pseudomonas
           syringae pv. maculicola str. ES4326]
 gi|330989166|gb|EGH87269.1| acetyl-CoA carboxylase biotin carboxylase subunit [Pseudomonas
           syringae pv. lachrymans str. M301315]
          Length = 447

 Score = 79.8 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 76/222 (34%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         L  DK+ +K  +    VP  P    
Sbjct: 77  AIHPGYGFLAENADFAEQVEKSGFAFIGPKADTIRLMGDKVSAKDAMKLANVPTVPGSDG 136

Query: 112 LVNRFTMDSQHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
            +      +  +   +  P +IK   GG   G+ V+ +++ +         ++++W    
Sbjct: 137 PLPEDEATALRIGREVGYPVIIKAAGGGGGRGMRVVHREEDLIEAASQTRAEAAAWFSNP 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+Y+     +   V+ D                   L+          PA  I   
Sbjct: 197 MVYLEKYLTNPRHVEVQVISDGQGQAI-----HLGDRDCSLQRRHQKVLEEAPAPFIDEQ 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              +V      A   IG RG    +FL+   + + +++E+N 
Sbjct: 252 ARADVLAACVKACIDIGYRGAGTFEFLY--ENGRFYFIEMNT 291


>gi|330960950|gb|EGH61210.1| 3-methylcrotonyl-CoA carboxylase alpha subunit [Pseudomonas
           syringae pv. maculicola str. ES4326]
          Length = 649

 Score = 79.8 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 41/221 (18%), Positives = 76/221 (34%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       E   + +      A      K  +K ++ + GVP+ P    
Sbjct: 81  AIHPGYGFLSENADFARAAEDAGLIFLGPPASAIDAMGSKSAAKTLMENAGVPLVPGYHG 140

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
                +    +      P ++K   GG   G+ V+++   +   L  +           +
Sbjct: 141 AAQDSETFAAAAERTGYPVLLKATAGGGGKGMKVVEQASELAEALASAQREAQSSFGDAR 200

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           +L+E+YV     +   V  D       +            K          PA  +  ++
Sbjct: 201 MLVEKYVLSPRHVEIQVFADQHGHCLYLNERDCSIQRRHQK-----VVEEAPAPGLTPEL 255

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            K +   A  A QAIG  G    +FL D    + F++E+N 
Sbjct: 256 RKAMGEAAVKAAQAIGYVGAGTVEFLLDAR-GEFFFMEMNT 295


>gi|323456110|gb|EGB11977.1| hypothetical protein AURANDRAFT_20291 [Aureococcus anophagefferens]
          Length = 1231

 Score = 79.8 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 76/221 (34%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E   +  + E   I +    +       DK+ ++Q   + GVPV P    
Sbjct: 140 AIHPGYGFLSESSELARLCEENGIAFVGPTVKNLNDFSDKVSARQTAIAAGVPVIPGTDG 199

Query: 112 LVNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVIKK----DQSIPLDLLQSSSWNHGDQ 165
            ++      +       P +IK   GG   G+ + +              ++ +      
Sbjct: 200 ALDNADQAYEFAKEAGLPLMIKATMGGGGKGMRIARTLDEVRSQFDAASSEALAGFGDGT 259

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDI 223
             IE+YV+    +   ++GD         V         ++        + PA  +   +
Sbjct: 260 CFIERYVENPRHVEIQIIGDGD------DVVHLWERDCSVQRRHQKVIEMAPAWNLDSAL 313

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            K++Q  A    +          +FL D  + + F++E+N 
Sbjct: 314 RKKLQDDAVKLGKLAKYENAGTVEFLVDVANNEHFFIEVNP 354


>gi|307594343|ref|YP_003900660.1| RimK family alpha-L-glutamate ligase [Vulcanisaeta distributa DSM
           14429]
 gi|307549544|gb|ADN49609.1| alpha-L-glutamate ligase, RimK family [Vulcanisaeta distributa DSM
           14429]
          Length = 272

 Score = 79.8 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 50/258 (19%), Positives = 99/258 (38%), Gaps = 23/258 (8%)

Query: 22  CASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAF--NVLHGNFGEDGLVQAILELLEIPY 79
               L+D G  V+ I++D     +       +     + H   G   LV  IL +  +  
Sbjct: 13  ILKELKDLGANVALINIDNISLSLNNSGDFGIVLVRPMSHSKAG---LVARILNIHGVRT 69

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSL 139
            + G LA   S +K  +   ++  G+P  P+ L+          +S P ++KP+ G    
Sbjct: 70  INKG-LAIENSWNKAIAISTLARAGIPTVPTRLILSINA-QGDGVSYPAIVKPIHGSWGR 127

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQL-LIEQYV-DGIELTCGVMGDASLDVTEIAVPKS 197
            + ++   + + + +   +  +   ++ +I+ ++ DG +    V+GD    V    V K 
Sbjct: 128 LVSLVGNAEDLAMIMRHKAVGDSYSRIAMIQPFIGDGTDYRVFVIGDE---VAASMVRKP 184

Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
               +    +     H    K+  D Y+    +A  A +A+     +  D L+       
Sbjct: 185 GPGDWRSNVARGGIAH--AVKLSADAYE----IAIKAVKALDL-DYAGVDLLYSEEGG-Y 236

Query: 258 FWLEINVQP---GMTPVS 272
              E+N  P   G+  VS
Sbjct: 237 MVNEVNAIPEFKGLMSVS 254


>gi|316933595|ref|YP_004108577.1| carbamoyl-phosphate synthase L chain ATP-binding protein
           [Rhodopseudomonas palustris DX-1]
 gi|315601309|gb|ADU43844.1| Carbamoyl-phosphate synthase L chain ATP-binding protein
           [Rhodopseudomonas palustris DX-1]
          Length = 671

 Score = 79.8 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 77/221 (34%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H  +G   E       L    I +      A A   DK+ SK+  +   V   P  L 
Sbjct: 77  AVHPGYGFLSEREAFPRALADAGIVFIGPNPGAIAAMGDKIESKKAAAQAKVSTVPGFLG 136

Query: 113 ---VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSWNHGDQ 165
               ++  +     I  P +IK   GG   G+ +      +     L   ++ +    D+
Sbjct: 137 VIEDDKHAVKIADEIGYPVMIKASAGGGGKGMRIAHSRAEVAEGFNLAKAEAKASFGDDR 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+++ D   +   V+GD   +V  +   +        K          P+ +  ++ 
Sbjct: 197 VFIEKFIVDPRHIEIQVLGDKHGNVIYLGERECSIQRRNQK-----VIEEAPSPLLDEVT 251

Query: 225 KE-VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +  +   A    +A+        +F      +  ++LE+N 
Sbjct: 252 RRKMGEQAVALAKAVNYDSAGTVEF-VAGQDKSFYFLEMNT 291


>gi|187933360|ref|YP_001885352.1| biotin carboxylase [Clostridium botulinum B str. Eklund 17B]
 gi|187721513|gb|ACD22734.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Clostridium
           botulinum B str. Eklund 17B]
          Length = 450

 Score = 79.8 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 41/220 (18%), Positives = 86/220 (39%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  FG   E+     + +   I +      +  L  DK R+++++    VPV P    
Sbjct: 77  AIHPGFGFLSENAKFAKMCKECNIKFIGPDYESIELMGDKARAREIMKKANVPVVPGYEG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGDQ 165
            I      +     I  P +IK   GG   GI + + D+           +S +    D+
Sbjct: 137 EIENETHALGIAKKIGYPIMIKAAAGGGGKGIRIARSDEEFLKGYKTAKSESKACFGDDR 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           L IE++++    +   ++ D   +V  +   +        K      +++    +  +I 
Sbjct: 197 LYIEKFIEKPRHIEFQILADEYGNVVHLGERECSLQRKNQKVLEEAPSNI----LNEEIR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +  +A  A +A+  +     +FLFD  +   +++E+N 
Sbjct: 253 NTMGEIAKKAAKAVNYKNAGTIEFLFDK-NNNFYFMEMNT 291


>gi|187735121|ref|YP_001877233.1| carbamoyl-phosphate synthase, large subunit [Akkermansia
           muciniphila ATCC BAA-835]
 gi|187425173|gb|ACD04452.1| carbamoyl-phosphate synthase, large subunit [Akkermansia
           muciniphila ATCC BAA-835]
          Length = 1064

 Score = 79.8 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 57/282 (20%), Positives = 102/282 (36%), Gaps = 44/282 (15%)

Query: 18  SGKACASALEDAGFKVSQID----------------------VDRSVGLVLAHLKPDLAF 55
           SG     AL   G+ V  ++                      VDR +  V+   +PD   
Sbjct: 29  SGTQACKALRAEGYDVVLVNSNPATIMTDPGMADHTYIEPLTVDR-ITAVIEKERPDALL 87

Query: 56  NVLHGNFG--------EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV 107
             L G           E+G    IL+   +      + A A   D++  K+ +   GVPV
Sbjct: 88  PNLGGQTALNLASKLHEEG----ILKQYGVEVIGVDLEAIARGEDRIIFKETMDRIGVPV 143

Query: 108 CPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
             S  V            +  P V++P       G  ++   + +   + +  + +  +Q
Sbjct: 144 AKSEPVYSVEEAEKVASELGYPVVLRPAYTMGGTGGGIVYNVEELRQVVPRGLAASLINQ 203

Query: 166 LLIEQYVDG-IELTCGVMGDASL-DVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLD 222
           +L+E+ V G  EL   V+ DA    +T   +   D           +S  V P   +P +
Sbjct: 204 VLVEECVLGWEELELEVVRDAKGQKITVCFIENVDPMGVHT----GDSFCVAPMLTVPQE 259

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +  ++Q  ++    AIG  G +   F  +    ++  +EIN 
Sbjct: 260 VQDKLQDYSYRILDAIGVTGGTNVQFAHNREDNRIIVIEINP 301



 Score = 53.2 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 31/222 (13%), Positives = 79/222 (35%), Gaps = 12/222 (5%)

Query: 68  VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ--HLIS 125
           +   L+   +    +      L+ D+   ++ + +  +    S          +    I 
Sbjct: 643 IAQALKDAGVKIMGTQPEGIRLAEDREYFRERMIALNIRQPESGTARSLEEAVELGRRIG 702

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGD 184
            P +++P       G+ VI  ++++    +++   +    +LI++++D  IE     + D
Sbjct: 703 YPVMVRPSFVLGGRGMEVIYDEENLKRYGVEAIQVSPEYPMLIDRFLDNAIEAEVDALAD 762

Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244
            +       +   +       +S  ++  + P  I     + ++  A    Q    +GI 
Sbjct: 763 GTDTFVATVMEHIELAGI---HSGDSACAIPPVTIAPKHIRTIEEHAAKIAQDFQVKGIL 819

Query: 245 RSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
              F     + +V+ +E N +   T     P ++   G S  
Sbjct: 820 NVQFAI--CNDEVYIIEANPRASRT----VPIVSKVTGISLA 855


>gi|163796882|ref|ZP_02190839.1| Acetyl/propionyl-CoA carboxylase, alpha subunit [alpha
           proteobacterium BAL199]
 gi|159177871|gb|EDP62420.1| Acetyl/propionyl-CoA carboxylase, alpha subunit [alpha
           proteobacterium BAL199]
          Length = 662

 Score = 79.8 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 43/220 (19%), Positives = 77/220 (35%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H  FG   E       LE   I +   G  A     DK+ SK++    GV   P  L 
Sbjct: 77  AVHPGFGFLSERAAFCEALEAAGIVFIGPGKSAIEAMGDKITSKKIAHEAGVSTVPGFLG 136

Query: 113 ---VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL----DLLQSSSWNHGDQ 165
                         I  P +IK   GG   G+ +   +  +       + ++ S    D+
Sbjct: 137 VIESPEHAAKIAGEIGYPVMIKASAGGGGKGMRIANSEADLKDGVRGAMNEARSSFGDDR 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE++++    +   VM D   +V  +   +        K             I  +  
Sbjct: 197 VFIEKFIEQPRHIEIQVMADGHGNVVHLGERECSIQRRHQK----VIEEAPSPFIDAETR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +   A    + +G R     +F+ D  ++K ++LE+N 
Sbjct: 253 AAMGAQAVALAKQVGYRSAGTVEFIADA-NKKFYFLEMNT 291


>gi|1695686|dbj|BAA12072.1| pyruvate carboxylase [Geobacillus stearothermophilus]
          Length = 1147

 Score = 79.8 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 28/216 (12%), Positives = 76/216 (35%), Gaps = 17/216 (7%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVN 114
           +G F E+           I +         +  DK++++    + G+PV P     +   
Sbjct: 87  YGFFSENIQFAKRCREEGIIFFGPNENHLDMFGDKVKARHAAVNAGIPVIPGSDGPVDGL 146

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQLLIEQ 170
              +        P +IK   GG   G+  ++    +         ++ +    D++ +E+
Sbjct: 147 EDVVAFAEAHGYPIIIKAALGGGGRGMRFVRSKSEVKEAFERAKSEAKAAFGSDEVYVEK 206

Query: 171 YVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQ 228
            ++    +   ++GD   ++  +           ++        V P   +  ++ + + 
Sbjct: 207 LIENPKHIEVQILGDYEGNIVHLYE-----RDCSVQRRHQKVVEVAPSVSLSDELRQRIC 261

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             A    +++G       +FL      + +++E+N 
Sbjct: 262 EAAVQLMRSVGYVNAGTVEFLV--SGDEFYFIEVNP 295


>gi|153815738|ref|ZP_01968406.1| hypothetical protein RUMTOR_01976 [Ruminococcus torques ATCC 27756]
 gi|145846979|gb|EDK23897.1| hypothetical protein RUMTOR_01976 [Ruminococcus torques ATCC 27756]
          Length = 449

 Score = 79.4 bits (195), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 73/220 (33%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  FG   E+     + E  EI +            +K  ++  + + G+PV      
Sbjct: 77  AIHPGFGFLSENAKFAELCEQCEITFIGPDSKVIGKMGNKTEARATMIAAGIPVIRGTNG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL----DLLQSSSWNHGDQ 165
            +L           I  P +IK   GG   G+   + ++           ++        
Sbjct: 137 AVLDLEEGKKEAARIGYPVIIKAALGGGGKGMRTAQSEEEFESCFVTARKEAEKAFGDGT 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE +V+    +   ++ D+  ++  +            K           A +  ++ 
Sbjct: 197 MYIEHFVEHPRHIEFQIIADSYGNIVHLGERDCSIQRNHQKMI----EECPCAALSDELR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K++   A  A +A G       +FL        +++E+N 
Sbjct: 253 KKMGETAVKAARAAGYTNAGTVEFLL-EKDGTFYFMEMNT 291


>gi|15895902|ref|NP_349251.1| carbamoyl phosphate synthase large subunit [Clostridium
           acetobutylicum ATCC 824]
 gi|22095520|sp|Q97FT3|CARB_CLOAB RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|15025672|gb|AAK80591.1|AE007762_1 Carbamoylphosphate synthase large subunit [Clostridium
           acetobutylicum ATCC 824]
          Length = 1065

 Score = 79.4 bits (195), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 42/293 (14%), Positives = 112/293 (38%), Gaps = 36/293 (12%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ------ 69
           A+++AG+K   I         D D +  L    L  D   N++     E  +VQ      
Sbjct: 582 AIKEAGYKSIIINNNPETVSTDFDTADKLYFESLYIDNVMNIIEKEKPEGVIVQFGGQTA 641

Query: 70  -AILELL---EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHL 123
             + + L    +    +   +  L+ D+ +  +++    +P    + V       ++   
Sbjct: 642 INLADKLYKNGVKILGTSFESIDLAEDREKFSELLKELNIPQAKGMAVTSMEEAYEAVKE 701

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + V+    ++   + ++ + +    +LI++Y+ G E+    + 
Sbjct: 702 IGYPVIVRPSYVIGGRAMQVVYDKLALQKYMTEAVTLSTEHPVLIDKYIKGTEIEVDTIS 761

Query: 184 DAS---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           D     +      + ++  +S        + T      +P ++  ++ +      +A+  
Sbjct: 762 DGENILIPGIMEHIERTGVHS------GDSITMYPYHTLPKEVVDKLVKYTKSLAKALEV 815

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +G+    +++D     V+ +E+N +   T     P ++   G    +L + ++
Sbjct: 816 KGLMNIQYVYD--GENVYVIEVNPRASRT----VPILSKVTGVPMVKLAVEIL 862



 Score = 55.5 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 55/330 (16%), Positives = 111/330 (33%), Gaps = 44/330 (13%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFN---------- 56
           G ++E + S   G     A+++ G +   ++ + +  +  +H+  D  +           
Sbjct: 21  GQAAEFDYS---GTQACKAVKEEGIETVLVNSNPATIMTDSHI-ADKVYIEPLTEEAVEK 76

Query: 57  ---------VLHGNFGEDGLV-------QAILELLEIPYTHSGILASALSMDKMRSKQVV 100
                    +L G  G+  L          +L+   +        A   + D+   K ++
Sbjct: 77  IIEKERPDGILAGFGGQTALNLAMNLNDAGVLDKYNVRLLGINSEAIKKAEDREEFKNLM 136

Query: 101 SSCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS 158
                PV  SI+       +D  +    P +I+P       G  +    + +     +  
Sbjct: 137 EEIDEPVPKSIIATHIDECIDFVNKFGLPVIIRPAFTLGGTGGGIASTMEELKEICDRGI 196

Query: 159 SWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
             +   Q+L+EQ V G  EL   VM DA  +   I V   +       ++  +       
Sbjct: 197 KMSPIGQILLEQSVAGWKELEYEVMRDAKDN--CIIVCNMENLDPVGVHTGDSIVTAPSQ 254

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV-------QPGMTP 270
            +    Y  ++  A    + +   G     F  +P S     +E+N              
Sbjct: 255 TLTDKEYHMLRHSALKIIRNLKIEGGCNIQFALNPKSNDYIVIEVNPRVSRSSALASKAA 314

Query: 271 VSIFPEMAA--YAGYSFRELLLWMVEDASC 298
                ++AA    GYS  EL  ++ +++S 
Sbjct: 315 GYPIAKIAAKIAVGYSLDELKNYVTKNSSA 344


>gi|325510054|gb|ADZ21690.1| carbamoyl phosphate synthase large subunit [Clostridium
           acetobutylicum EA 2018]
          Length = 1065

 Score = 79.4 bits (195), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 42/293 (14%), Positives = 112/293 (38%), Gaps = 36/293 (12%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ------ 69
           A+++AG+K   I         D D +  L    L  D   N++     E  +VQ      
Sbjct: 582 AIKEAGYKSIIINNNPETVSTDFDTADKLYFESLYIDNVMNIIEKEKPEGVIVQFGGQTA 641

Query: 70  -AILELL---EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHL 123
             + + L    +    +   +  L+ D+ +  +++    +P    + V       ++   
Sbjct: 642 INLADKLYKNGVKILGTSFESIDLAEDREKFSELLKELNIPQAKGMAVTSMEEAYEAVKE 701

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + V+    ++   + ++ + +    +LI++Y+ G E+    + 
Sbjct: 702 IGYPVIVRPSYVIGGRAMQVVYDKLALQKYMTEAVTLSTEHPVLIDKYIKGTEIEVDTIS 761

Query: 184 DAS---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           D     +      + ++  +S        + T      +P ++  ++ +      +A+  
Sbjct: 762 DGENILIPGIMEHIERTGVHS------GDSITMYPYHTLPKEVVDKLVKYTKSLAKALEV 815

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +G+    +++D     V+ +E+N +   T     P ++   G    +L + ++
Sbjct: 816 KGLMNIQYVYD--GENVYVIEVNPRASRT----VPILSKVTGVPMVKLAVEIL 862



 Score = 55.1 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 43/241 (17%), Positives = 82/241 (34%), Gaps = 14/241 (5%)

Query: 70  AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQHLISPP 127
            +L+   +        A   + D+   K ++     PV  SI+       +D  +    P
Sbjct: 106 GVLDKYNVRLLGINSEAIKKAEDREEFKNLMEEIDEPVPKSIIATHIDECIDFVNKFGLP 165

Query: 128 YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDAS 186
            +I+P       G  +    + +     +    +   Q+L+EQ V G  EL   VM DA 
Sbjct: 166 VIIRPAFTLGGTGGGIASTMEELKEICDRGIKMSPIGQILLEQSVAGWKELEYEVMRDAK 225

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRS 246
            +   I V   +       ++  +        +    Y  ++  A    + +   G    
Sbjct: 226 DN--CIIVCNMENLDPVGVHTGDSIVTAPSQTLTDKEYHMLRHSALKIIRNLKIEGGCNI 283

Query: 247 DFLFDPLSRKVFWLEINV-------QPGMTPVSIFPEMAA--YAGYSFRELLLWMVEDAS 297
            F  +P S     +E+N                   ++AA    GYS  EL  ++ +++S
Sbjct: 284 QFALNPKSNDYIVIEVNPRVSRSSALASKAAGYPIAKIAAKIAVGYSLDELKNYVTKNSS 343

Query: 298 C 298
            
Sbjct: 344 A 344


>gi|321477841|gb|EFX88799.1| hypothetical protein DAPPUDRAFT_187192 [Daphnia pulex]
          Length = 716

 Score = 79.4 bits (195), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 83/222 (37%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     ILE   + +      A +   DK+ SK+V    GV V P    
Sbjct: 124 AVHPGYGFLSENAEFVTILEREGVAFIGPSAHAISGMGDKIESKKVAKEAGVHVIPGFDG 183

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGD 164
            ++     +     I  P +IK   GG   G+ +   D              +SS+   D
Sbjct: 184 VVVDEDHCIQIARDIGYPVMIKASAGGGGKGMRIAWNDAEAREGFRLSKQEAASSFG-DD 242

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLN-STHVLPAKIPLD 222
           ++L+E++VD    +   ++GD   +V  +   +        K      ST + PA     
Sbjct: 243 RMLVEKFVDNPRHIEIQILGDKQGNVIYLNERECSIQRRNQKVIEEAPSTFIDPA----- 297

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
               + + A    + IG       +FL D      ++LE+N 
Sbjct: 298 TRMAMGQQAVTLAKKIGYCSAGTVEFLVDSKKN-FYFLEMNT 338


>gi|314936278|ref|ZP_07843625.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Staphylococcus
           hominis subsp. hominis C80]
 gi|313654897|gb|EFS18642.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Staphylococcus
           hominis subsp. hominis C80]
          Length = 453

 Score = 79.4 bits (195), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 84/220 (38%), Gaps = 18/220 (8%)

Query: 56  NVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
           N +H  +G   E       +E  +I +         +  DK+ ++Q V S GVPV P   
Sbjct: 75  NAIHPGYGFLSESTTFAQKVEENDIHFIGPNKKTMEMMGDKITARQTVHSAGVPVIPGST 134

Query: 111 --ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS----WNHGD 164
             +       +    I  P V+K   GG   GI ++K++  +   L ++ S    + + D
Sbjct: 135 DAVNSVEEIKELAKDIGYPLVLKAASGGGGKGIRIVKEENQLEKSLKEAKSEGQKYFNDD 194

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           ++ +E ++     +   V+GD   +   +            + +         A +  + 
Sbjct: 195 RVYVEAFIPVAKHIEVQVIGDGKENYVHLGERDCSV----QRKNQKLIEEAPCAALSEER 250

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            +++   A    +A   R     +FL    +   +++E+N
Sbjct: 251 REKICNDAVKVAKASNYRSAGTIEFLVTEEAH--YFIEMN 288


>gi|312127564|ref|YP_003992438.1| carbamoyl-phosphate synthase, large subunit [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311777583|gb|ADQ07069.1| carbamoyl-phosphate synthase, large subunit [Caldicellulosiruptor
           hydrothermalis 108]
          Length = 1075

 Score = 79.4 bits (195), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 55/289 (19%), Positives = 105/289 (36%), Gaps = 39/289 (13%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQID-------VDRS--------------VGLV 45
           G ++E + S   G     AL++ G +V  I+        D++              +  +
Sbjct: 21  GQAAEFDYS---GSQACKALKEEGIEVVLINSNPATIMTDKTMADSIYIEPITCEIIEKI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   K D     L G  G +  V+     IL+   +    + I A   + D+   KQ++ 
Sbjct: 78  IQKEKVDSILPTLGGQTGLNTAVELYKSGILDKYNVKVIGTNIEAIEFAEDRQLFKQLMI 137

Query: 102 SCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G PV PS +VN     +     I  P +I+P       G  +   ++       +  S
Sbjct: 138 KIGEPVIPSEVVNSVEDGLAFAKKIGFPVIIRPAYTLGGTGGGIANNEEEFVEIARRGLS 197

Query: 160 WNHGDQLLIEQYVDG---IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216
           ++   Q+L+E+ + G   IE       +  L              +     + +S  V P
Sbjct: 198 YSPVHQILVEKSIKGWKEIEYEVMRDSNGCLITVCNMENIDPVGIH-----TGDSIVVAP 252

Query: 217 AK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           ++ +    Y+ ++  A     A+   G     F  +P S +   +E+N 
Sbjct: 253 SQTLSDKEYQMLRSSALKIIDALKIEGGCNVQFALNPDSFEYAVIEVNP 301



 Score = 75.5 bits (185), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 36/229 (15%), Positives = 91/229 (39%), Gaps = 19/229 (8%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI--LVNRFTMDSQHLISPPYVIKPL 133
            I    +      ++ D+ R  ++++   +   P       +  ++  + +  P +++P 
Sbjct: 654 GIKIFGTSAEGIDIAEDRERFDKILNKLSIKRPPGFTCYTLQEALEIANSLGYPVLVRPS 713

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
                 G+ +   D  I   L  + + N    +LI++Y+ G E+    + D      +I 
Sbjct: 714 YVLGGQGMKIAFDDDDIVEMLSYAKNLN-DHPILIDKYIVGKEIEVDAISDGK----DIL 768

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
           +P    +       S +S  + PA+ I   I +++        + + C+G+    F+   
Sbjct: 769 IPGIMEHIERAGVHSGDSISLYPARNISKYIEEKIVEYTLKIARELECKGLMNVQFIV-- 826

Query: 253 LSRKVFWLEIN-----VQPGMTPVSIFPEMAAYA----GYSFRELLLWM 292
            + +++ +E+N       P ++ V+  P +        GY  ++L+  +
Sbjct: 827 QNEELYVIEVNPRGSRTVPFLSKVTGVPMVELATMVSLGYRLKDLVNTV 875


>gi|304436900|ref|ZP_07396864.1| carbamoyl-phosphate synthase, large subunit [Selenomonas sp. oral
           taxon 149 str. 67H29BP]
 gi|304370099|gb|EFM23760.1| carbamoyl-phosphate synthase, large subunit [Selenomonas sp. oral
           taxon 149 str. 67H29BP]
          Length = 1075

 Score = 79.4 bits (195), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 54/289 (18%), Positives = 116/289 (40%), Gaps = 39/289 (13%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI---------DVD------------RSVGLV 45
           G ++E + +   G     AL++ G +V  +         D +              +  +
Sbjct: 21  GQAAEFDYA---GSQACRALKEDGLEVVLVNSNPATIMTDTNIAGRVYIEPLTVEFLTEI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +A  KPD     L G  G +  VQ     IL    +    + + A   + D+ R K+ + 
Sbjct: 78  IAKEKPDGLLATLGGQAGLNLAVQLAEKGILAEYGVELLGTSLDAIEKAEDRERFKETME 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G P+  S++V      +D  + I  P +++P       G  + + ++ +   +++  +
Sbjct: 138 KLGEPIPESLIVEDVHAAVDFANTIGYPVIVRPAYTMGGTGGGIAENEEELIAIVIKGLN 197

Query: 160 WNHGDQLLIEQYVDG---IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216
           ++   Q+LIE+ V G   IE      G+ +     I V   + +     ++  +S  V P
Sbjct: 198 YSMIGQVLIERSVAGWKEIEFEVIRDGNDN----CITVCSMENFDPVGVHT-GDSIVVAP 252

Query: 217 AK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           A+ +    Y+ ++  +    + +G  G   + +  D  S + + +E+N 
Sbjct: 253 AQTLTDHEYQMLRSASLRIIRELGIEGGCNAQYALDTKSDQYYVIEVNP 301



 Score = 62.8 bits (152), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 41/263 (15%), Positives = 90/263 (34%), Gaps = 30/263 (11%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLV------- 68
           AL + G +   I         D D S  L    L  +   N+       DG++       
Sbjct: 582 ALREMGIEAIIINNNPETVSTDFDISDRLYFEPLTVEDVLNIAD-KEKPDGIIVQFGGQT 640

Query: 69  ----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--QH 122
                A LE   +    + +     S D+ R ++V++   +     I V           
Sbjct: 641 AINLAAELERAGLHVYGTSVDDIDRSEDRERFEEVLTETEISRPEGISVTNLDDAVTGAA 700

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + ++  +  +   + ++        +L+++Y+ G E+    +
Sbjct: 701 RIGYPVMVRPSYVLGGRAMEIVYNEDELRDYMSRAVKVTPDHPVLVDRYMQGTEVEVDAI 760

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCR 241
            D      ++ +P    +       S +S  V P + +   +   +         A+  +
Sbjct: 761 SDG----VDVVIPGIMEHIERAGVHSGDSIAVYPPQTLSARVIYTIIDYTKRLAVALHVK 816

Query: 242 GISRSDFLFDPLSRKVFWLEINV 264
           G+    F+      +VF +E+N 
Sbjct: 817 GLLNIQFVV--AHDEVFIIEVNP 837


>gi|294791709|ref|ZP_06756857.1| pyruvate carboxylase [Veillonella sp. 6_1_27]
 gi|294456939|gb|EFG25301.1| pyruvate carboxylase [Veillonella sp. 6_1_27]
          Length = 1148

 Score = 79.4 bits (195), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 44/278 (15%), Positives = 96/278 (34%), Gaps = 28/278 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59
           +A+     S E  +SL   +A  + L   G K     +D   +  +      D     +H
Sbjct: 31  VAI----YSKEDTLSLHRNQADEAYLVGEGKKPVDAYLDIEDIIRIAKEHDID----AIH 82

Query: 60  GNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS---ILV 113
             +G   E+       E   I +    I    +  DK+ +++      +P+ P     L 
Sbjct: 83  PGYGFLSENEGFARRCEEEGIIFIGPKIKHLNMFGDKVNAREQAKLAKIPMIPGSDGALK 142

Query: 114 NRFTMDS-QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQLLI 168
           +   ++        P +IK + GG   G+  +   + +         ++ +    D + +
Sbjct: 143 DYAQLEEFADTHGFPLMIKAVNGGGGRGMREVHHKEDLRDAYDRAKSEAKAAFGDDDVYV 202

Query: 169 EQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKE 226
           E+ + +   +   ++GD   +V              ++        + PA  + L+  K 
Sbjct: 203 EKLIVEPKHIEVQILGDEHGNVV-----HLHERDCSVQRRHQKVVEMAPAFALSLETRKA 257

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           V   A    + +G       +FL        +++E+N 
Sbjct: 258 VCDAAVKIMKNVGYVNAGTVEFLVTA-DGSFYFIEVNP 294


>gi|254516880|ref|ZP_05128938.1| methylcrotonoyl-CoA carboxylase subunit alpha [gamma
           proteobacterium NOR5-3]
 gi|219674385|gb|EED30753.1| methylcrotonoyl-CoA carboxylase subunit alpha [gamma
           proteobacterium NOR5-3]
          Length = 665

 Score = 79.4 bits (195), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 41/221 (18%), Positives = 80/221 (36%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       E   I +      A      K R+K +++  GVP+ P    
Sbjct: 77  AIHPGYGFLSENADFARACEAAGIVFIGPSAAAIESMGSKSRAKAIMAEAGVPLIPGYHG 136

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
           +  + +        +  P ++K   GG   G+  + +       L  +   +      D+
Sbjct: 137 DDQSDEVLRKEADSMGYPVLLKATSGGGGKGMRAVNEAGEFSEALAAARRESAASFGDDR 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           +LIE+ +     +   V  DA  +   +A           K          PA  +  ++
Sbjct: 197 MLIEKLIQRPRHVEVQVFCDAQGNGVYLAERDCSIQRRHQK-----VIEEAPAPGLSDEL 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +   A  A +AI   G    +FL D   ++ F++E+N 
Sbjct: 252 RRAMGEAAVEAARAINYLGAGTVEFLLDAS-QQFFFMEMNT 291


>gi|238926952|ref|ZP_04658712.1| carbamoyl-phosphate synthase (glutamine-hydrolyzing) [Selenomonas
           flueggei ATCC 43531]
 gi|238885186|gb|EEQ48824.1| carbamoyl-phosphate synthase (glutamine-hydrolyzing) [Selenomonas
           flueggei ATCC 43531]
          Length = 1075

 Score = 79.4 bits (195), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 54/289 (18%), Positives = 116/289 (40%), Gaps = 39/289 (13%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI---------DVD------------RSVGLV 45
           G ++E + +   G     AL++ G +V  +         D +              +  +
Sbjct: 21  GQAAEFDYA---GSQACRALKEDGLEVVLVNSNPATIMTDTNIADRVYIEPLTVEFLTEI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +A  KPD     L G  G +  VQ     IL    +    + + A   + D+ R K+ + 
Sbjct: 78  IAKEKPDGLLATLGGQAGLNLAVQLAEKGILAEYGVELLGTSLDAIEKAEDRERFKETME 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G P+  S++V      +D  + I  P +++P       G  + + ++ +   +++  +
Sbjct: 138 KLGEPIPESLIVEDVHAAVDFANTIGYPVIVRPAYTMGGTGGGIAENEEELIAIVIKGLN 197

Query: 160 WNHGDQLLIEQYVDG---IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216
           ++   Q+LIE+ V G   IE      G+ +     I V   + +     ++  +S  V P
Sbjct: 198 YSMIGQVLIERSVAGWKEIEFEVIRDGNDN----CITVCSMENFDPVGVHT-GDSIVVAP 252

Query: 217 AK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           A+ +    Y+ ++  +    + +G  G   + +  D  S + + +E+N 
Sbjct: 253 AQTLTDHEYQMLRSASLRIIRELGIEGGCNAQYALDTKSDQYYVIEVNP 301



 Score = 62.1 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 41/263 (15%), Positives = 90/263 (34%), Gaps = 30/263 (11%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLV------- 68
           AL + G +   I         D D S  L    L  +   N+       DG++       
Sbjct: 582 ALREMGIEAIIINNNPETVSTDFDISDRLYFEPLTVEDVLNIAD-KEKPDGIIVQFGGQT 640

Query: 69  ----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--QH 122
                A LE   +    + +     S D+ R ++V++   +     I V           
Sbjct: 641 AINLAAELERAGLHVYGTSVDDIDRSEDRERFEEVLTETEISRPEGISVTNLDDAVTGAA 700

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + ++  +  +   + ++        +L+++Y+ G E+    +
Sbjct: 701 RIGYPVMVRPSYVLGGRAMEIVYNEDELRDYMGRAVKVTPDHPVLVDRYMQGTEVEVDAI 760

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCR 241
            D      ++ +P    +       S +S  V P + +   +   +         A+  +
Sbjct: 761 SDG----VDVVIPGIMEHIERAGVHSGDSIAVYPPQTLSARVIYTIIDYTKRLAVALHVK 816

Query: 242 GISRSDFLFDPLSRKVFWLEINV 264
           G+    F+      +VF +E+N 
Sbjct: 817 GLLNIQFVV--AHDEVFIIEVNP 837


>gi|225182118|ref|ZP_03735545.1| carbamoyl-phosphate synthase, large subunit [Dethiobacter
           alkaliphilus AHT 1]
 gi|225167181|gb|EEG76005.1| carbamoyl-phosphate synthase, large subunit [Dethiobacter
           alkaliphilus AHT 1]
          Length = 1066

 Score = 79.4 bits (195), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 56/323 (17%), Positives = 118/323 (36%), Gaps = 50/323 (15%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI---------DVD------------RSVGLV 45
           G ++E + S   G     AL   G+++  +         D              + +  +
Sbjct: 21  GQAAEFDYS---GTQACKALRKLGYEIVLVNSNPATIMTDPGMADATYIEPLNVKRLTEI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   +PD     L G    +  +    Q ILE   +      + A     D++  K+ ++
Sbjct: 78  IEKERPDALLPNLGGQSALNLSIELNKQGILEKYGVKVIGVQLDAIERGEDRIAFKESMN 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G+ +  S         ++    +  P V++P       G  ++   + +     +  S
Sbjct: 138 KLGIEMARSEPAYSVEEAVEIAKELGFPVVVRPAYTMGGAGGGLVYNVEELESIAARGIS 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA- 217
            +   Q+LIE+ V G  EL   V+ D+   +  +   ++      +   + +S    P  
Sbjct: 198 ASMVGQVLIEESVLGWEELELEVVRDSKGQMITVCFIENVD---PVGVHTGDSFCTAPML 254

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI---- 273
            I  ++ + +Q+ ++   +A+G  G +   F  DP + ++  +EIN +   T  S     
Sbjct: 255 TISEEVQQRLQKHSYDIVEAVGVIGGTNVQFAHDPKTGRIVVIEINPR---TSRSSALAS 311

Query: 274 ----FPE----MAAYAGYSFREL 288
               FP         AG +  E+
Sbjct: 312 KATGFPIALISAMLAAGMTLDEI 334



 Score = 54.4 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/228 (12%), Positives = 80/228 (35%), Gaps = 12/228 (5%)

Query: 68  VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--FTMDSQHLIS 125
           +   L    +    + + A  L+ D+ R + V+    +P+  + + +     ++    I 
Sbjct: 642 IAGELAEEGVRILGTSLDAIDLAEDRDRFRAVMEKLNIPMPEAGMASNLSEALEIAGKIG 701

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGD 184
            P +++P       G+ V+  +  +   +  +        +L+++++ + IE     + +
Sbjct: 702 YPLMVRPSYVLGGRGMEVVHDEDMLRQYIQAAVDITPQRPILLDKFLANAIEAEADAISN 761

Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244
                    +   ++      +S  ++  + P  I     + +        Q +   G+ 
Sbjct: 762 GKEVFVPAVMEHIEYAGI---HSGDSACVIPPISIGEGHLETINEYTKKIAQELQVVGL- 817

Query: 245 RSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
             +  +   +  V+ LE N +   T     P ++     S   L   +
Sbjct: 818 -MNMQYAISNGNVYVLEANPRASRT----VPIVSKVCNISMARLATEI 860


>gi|119094177|gb|ABL60999.1| propionyl-CoA carboxylase alpha subunit [uncultured marine
           bacterium HF10_25F10]
          Length = 658

 Score = 79.4 bits (195), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 79/220 (35%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  FG   E+    A +E   + +   G  A A+  DK+ SK +  S GV   P    
Sbjct: 77  AIHPGFGFLSENAGFVAEVEAAGLVFIGPGTKAIAVMGDKIESKALAKSAGVSTVPGTEG 136

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGDQ 165
               ++    +   I  P ++K   GG   G+ VI+    +       + ++ +     +
Sbjct: 137 EVDDVEVGLKAAAEIGYPVMVKASAGGGGKGMRVIESADDLSDGMRAAMSEAQTAFGDSR 196

Query: 166 LLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE++ V    +   ++ D   ++  +            K             I  +  
Sbjct: 197 VFIEKFVVQPRHIEIQLLADQHGNIVYVGERXCSIQRRHQK----VVEXXPSPFISPETR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +   A    +A+G R     +F+     +  ++LE+N 
Sbjct: 253 AAMGEQAVELARAVGYRSAGTVEFIV-GADQDFYFLEMNT 291


>gi|294793573|ref|ZP_06758710.1| pyruvate carboxylase [Veillonella sp. 3_1_44]
 gi|294455143|gb|EFG23515.1| pyruvate carboxylase [Veillonella sp. 3_1_44]
          Length = 1148

 Score = 79.4 bits (195), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 44/278 (15%), Positives = 96/278 (34%), Gaps = 28/278 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59
           +A+     S E  +SL   +A  + L   G K     +D   +  +      D     +H
Sbjct: 31  VAI----YSKEDTLSLHRNQADEAYLVGEGKKPVDAYLDIEDIIRIAKEHDID----AIH 82

Query: 60  GNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS---ILV 113
             +G   E+       E   I +    I    +  DK+ +++      +P+ P     L 
Sbjct: 83  PGYGFLSENEGFARRCEEEGIIFIGPKIKHLNMFGDKVNAREQAKLAKIPMIPGSDGALK 142

Query: 114 NRFTMDS-QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQLLI 168
           +   ++        P +IK + GG   G+  +   + +         ++ +    D + +
Sbjct: 143 DYAQLEEFADTHGFPLMIKAVNGGGGRGMREVHHKEDLRDAYDRAKSEAKAAFGDDDVYV 202

Query: 169 EQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKE 226
           E+ + +   +   ++GD   +V              ++        + PA  + L+  K 
Sbjct: 203 EKLIVEPKHIEVQILGDEHGNVV-----HLHERDCSVQRRHQKVVEMAPAFALSLETRKA 257

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           V   A    + +G       +FL        +++E+N 
Sbjct: 258 VCDAAVKIMKNVGYVNAGTVEFLVTA-DGSFYFIEVNP 294


>gi|316934406|ref|YP_004109388.1| acetyl-CoA carboxylase, biotin carboxylase [Rhodopseudomonas
           palustris DX-1]
 gi|315602120|gb|ADU44655.1| acetyl-CoA carboxylase, biotin carboxylase [Rhodopseudomonas
           palustris DX-1]
          Length = 450

 Score = 79.4 bits (195), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 74/220 (33%), Gaps = 18/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     IL    + +         L  DK+ +K+     G+PV P    
Sbjct: 77  AVHPGYGFLSENARFAEILADHNLHFIGPKAEHIRLMGDKIEAKKTAKRLGIPVVPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
            +  +   M     I  P ++K   GG   G+ V      + L +     ++ +      
Sbjct: 137 AVGPDDDAMAIAQSIGFPVLVKAAAGGGGRGMKVAHTADDLALAISTAGNEAKAAFGDAS 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+Y+     +   ++GD       +            K             I  +  
Sbjct: 197 VYLEKYLQKPRHIEIQILGDGRGGAIHLGERDCSLQRRHQK----VWEESPSPVISAEAR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +  +   A Q +   G+   +FL+     + +++E+N 
Sbjct: 253 ARIGGICAKAMQDMQYLGVGTIEFLY--EDGEFYFIEMNT 290


>gi|118445079|ref|YP_879125.1| pyruvate carboxylase [Clostridium novyi NT]
 gi|118135535|gb|ABK62579.1| pyruvate carboxylase [Clostridium novyi NT]
          Length = 1145

 Score = 79.4 bits (195), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 39/222 (17%), Positives = 78/222 (35%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+       E   I +            DK++SK V  S  VP  P    
Sbjct: 81  AIHPGYGFLSENAEFARKCEEAGIEFIGPTAEMMEKLGDKIKSKLVAQSVNVPTIPGVEK 140

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS-----SSWNHGD 164
            +      +        P ++K   GG   G+ +++    +      +      ++   D
Sbjct: 141 PVTSEEEAIKFAEYCGYPIMLKAAAGGGGRGMRIVRNKDELIPSFKSAKNEAKKAFGIDD 200

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + IE+Y++    +   V+GD   ++  +            K          PA  +P +
Sbjct: 201 -IFIEKYLENPKHIEVQVIGDKHGNIVHLYERDCSIQRRHQK-----VIEFTPAFALPKE 254

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +E+   A    +++G R     +FL D      +++E+N 
Sbjct: 255 KREEICNDALKIARSVGYRSAGTLEFLVDMHGNH-YFIEMNP 295


>gi|300857339|ref|YP_003782323.1| biotin carboxylase [Clostridium ljungdahlii DSM 13528]
 gi|300437454|gb|ADK17221.1| biotin carboxylase [Clostridium ljungdahlii DSM 13528]
          Length = 447

 Score = 79.4 bits (195), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 84/220 (38%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  FG   E+    +I +   I +            +K  ++ ++   GVP+ P    
Sbjct: 77  AIHPGFGFLSENSKFASICKQCNITFIGPTPECIDNMGNKSNARDIMGKAGVPIVPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGDQ 165
            I  N   +++   I  P +IK   GG   GI V+  +  I         ++S+    D 
Sbjct: 137 AIKTNEELLETARKIGYPVMIKASAGGGGRGIRVVYDESEIIKNYENAKAEASAAFGDDT 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E++++    +   ++GD   +V  +            K      + V    +  ++ 
Sbjct: 197 IYLEKFIERPKHVEIQILGDNFENVVYLGERDCSMQRRNQKVMEEAPSKV----VTEELR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K +   A  A +A+        +FL D  +   +++E+N 
Sbjct: 253 KSMGETAVRAAKAVHYNNAGTVEFLLDK-NNNYYFMEMNT 291


>gi|11498873|ref|NP_070102.1| carbamoyl-phosphate synthase, large (or ammonia) subunit (carB)
           [Archaeoglobus fulgidus DSM 4304]
 gi|22095482|sp|O28994|CARB_ARCFU RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|2649305|gb|AAB89970.1| carbamoyl-phosphate synthase, large (or ammonia) subunit (carB)
           [Archaeoglobus fulgidus DSM 4304]
          Length = 1076

 Score = 79.4 bits (195), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 54/289 (18%), Positives = 106/289 (36%), Gaps = 38/289 (13%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQIDVDRS---------------------VGLV 45
           G ++E + S   G     AL + G++V  ++ + +                     V  +
Sbjct: 21  GQAAEFDYS---GSQACKALREEGYEVVLVNSNPATIMTDPEMADRVYIEPLDAEIVAKI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +    PD     L G    +  VQ     +L+   +    +   A   + D+   K+ + 
Sbjct: 78  IERETPDALLPTLGGQTALNLAVQLTEMGVLDKYGVELIGAKFEAIKKAEDRELFKEAMR 137

Query: 102 SCGVPVCPSILVNR--FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G+ V  S + +     +     I  P V++P       G  +    + +     +   
Sbjct: 138 KIGLDVPKSDVAHDVSEALAIADEIGYPVVVRPAFTLGGTGGGIAYNREELREIAERGIK 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPA 217
            +  +Q+LIE+ V G  E    VM D + +V  I   ++    ++       +S  V PA
Sbjct: 198 MSMINQVLIEEGVLGWKEFELEVMRDLADNVVIICSIEN----FDPMGVHTGDSITVAPA 253

Query: 218 K-IPLDIYKEVQRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           + +    Y+ ++  A    + IG   G S   F   P + +V  +E+N 
Sbjct: 254 QTLTDVEYQYLRDAAIKIIREIGVETGGSNIQFAVHPENGRVVAIEMNP 302



 Score = 61.7 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 41/290 (14%), Positives = 99/290 (34%), Gaps = 33/290 (11%)

Query: 26  LEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ------- 69
           L+D G++   +         D D S  L    +  +   N+      E  +VQ       
Sbjct: 590 LKDEGYETIMVNCNPETVSTDYDTSDRLYFEPITHEDVMNIYENEQPEGVIVQFGGQTPL 649

Query: 70  ---AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLI 124
                LE        + + +  ++ D+ R  +++    +P   + + +      +    I
Sbjct: 650 NIARELEDSGARILGTSVDSIDIAEDRERFAELLERLNIPQPENGIAHSLEEAKEIARKI 709

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMG 183
             P +++P        + ++  ++++   + ++   +    +LI++++ D IE+    + 
Sbjct: 710 GFPVLVRPSYVLGGRAMEIVYDEETLERYITEALEVSPEKPILIDKFLEDAIEVEVDALC 769

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
           D    V    +   +    E    S +S  V  P  +       +         A+   G
Sbjct: 770 DGEEVVIGGIMEHIE----EAGVHSGDSACVLPPVSLDEVTINTIVDYTRKLALALNVVG 825

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +    +       KV+ LE N +   T     P ++   G    ++   +
Sbjct: 826 LINIQYAV--KDGKVYVLEANPRASRT----VPFVSKATGIPLAKIAAKL 869


>gi|253578543|ref|ZP_04855815.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251850861|gb|EES78819.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 448

 Score = 79.4 bits (195), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 77/220 (35%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  FG   E+     + E   + +        +   +K  +K  +    VPV P    
Sbjct: 77  AIHPGFGFLSENSRFVEMCEKCNVAFIGPSAEVISRMGNKSEAKNTMRKAKVPVVPGTKE 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN----HGDQ 165
            +      +++   I  P +IK   GG   G+ V   +Q        +   +      + 
Sbjct: 137 PVYTVEQALEAVKEIGFPVMIKASAGGGGKGMRVAGNEQEFAKLFETAQQESVHSFSDNT 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E++V+    +   ++ D   +V  +            K             I  D+ 
Sbjct: 197 MYLERFVENPRHVEVQILADKYGNVVHLGERDCSVQRRHQKMI----EESPCIAISDDLR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K++   A  A +A G       +FL D  S + +++E+N 
Sbjct: 253 KKMGETAVRAAKAAGYESAGTIEFLLD-QSGEFYFMEMNT 291


>gi|156367122|ref|XP_001627268.1| predicted protein [Nematostella vectensis]
 gi|156214173|gb|EDO35168.1| predicted protein [Nematostella vectensis]
          Length = 571

 Score = 79.4 bits (195), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 37/219 (16%), Positives = 81/219 (36%), Gaps = 17/219 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E      + +   I +      A      K  SK ++S  GVP+    ++
Sbjct: 76  AIHPGYGFLSESPEFADLCQEENIIFIGPPASAIRDMGIKSTSKSIMSDAGVPIIQGNIL 135

Query: 114 NR--FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQLL 167
           +              P ++K ++GG   G+ ++         L  + + +      D +L
Sbjct: 136 SSLLSIHFYSSTSKYPVMLKAVRGGGGKGMRIVNSPDEFHEMLESAKNESIKSFNDDSML 195

Query: 168 IEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYK 225
           +E++V+    +   V GD   +V  +           ++          PA  +  ++ +
Sbjct: 196 VEKFVETPRHVEVQVFGDRQGNVVYLYE-----RDCSVQRRHQKIIEEAPAPGVSDEVRR 250

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +   A  A +A+G  G    +F+ D      +++E+N 
Sbjct: 251 SIGEAAVRAAKAVGYFGAGTVEFIMDSSQN-FYFMEMNT 288


>gi|289673858|ref|ZP_06494748.1| carbamoyl-phosphate synthase subunit L [Pseudomonas syringae pv.
           syringae FF5]
          Length = 649

 Score = 79.4 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 76/221 (34%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      +E   + +      A      K  +K ++   GVP+ P    
Sbjct: 81  AIHPGYGFLSENADFARAIENAGLIFLGPPASAIDAMGSKSAAKALMEQAGVPLVPGYHG 140

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
               ++    +   I  P ++K   GG   G+ V++    +   L  +           +
Sbjct: 141 EAQDIETFRAAAERIGYPVLLKATAGGGGKGMKVVEHTGELAEALASAQREALSSFGDAR 200

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           +L+E+YV     +   V  D       +            K          PA  +   +
Sbjct: 201 MLVEKYVLAPRHVEIQVFADRHGHCLYLNERDCSIQRRHQK-----VVEEAPAPGLTASL 255

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            K +   A  A QAIG  G    +FL D    + F++E+N 
Sbjct: 256 RKAMGEAAVKAAQAIGYVGAGTVEFLLDAR-GEFFFMEMNT 295


>gi|330685476|gb|EGG97130.1| putative acetyl-CoA carboxylase, biotin carboxylase subunit
           [Staphylococcus epidermidis VCU121]
          Length = 454

 Score = 79.4 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 78/220 (35%), Gaps = 18/220 (8%)

Query: 56  NVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
           N +H  +G   E       +E   I +         +  DK+ ++Q V   GVPV P   
Sbjct: 76  NAIHPGYGFLSESTSFAEAVEDNNIHFIGPNKTTMEMMGDKITARQTVDGAGVPVIPGST 135

Query: 113 VN----RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS----SSWNHGD 164
                     +    I  P V+K   GG   GI ++K+ + +     ++      + + +
Sbjct: 136 DEVKSVEEIEELAKDIGYPVVLKAASGGGGKGIRIVKEREQLAKAFKEAKSEGEKYFNDN 195

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           ++ +E ++     +   ++GD   +   +            + +         A +  + 
Sbjct: 196 RVYVEAFIPVAKHVEVQIIGDGKDNFVHLGERDCSV----QRKNQKLIEESPCAALTEER 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            + +   A    +A   R     +FL    +   +++E+N
Sbjct: 252 RERICEDAVKVAKASKYRSAGTIEFLVTEDAH--YFIEMN 289


>gi|4587569|gb|AAD25800.1|AC006550_8 Identical to gb|U12536 3-methylcrotonyl-CoA carboxylase precursor
           protein from Arabidopsis thaliana. ESTs gb|H35836,
           gb|AA651295 and gb|AA721862 come from this gene
          Length = 730

 Score = 79.4 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 85/220 (38%), Gaps = 20/220 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E      + E   + +      A     DK  SK+++ + GVP+ P    
Sbjct: 113 AIHPGYGFLSESSDFAQLCEDSGLTFIGPPASAIRDMGDKSASKRIMGAAGVPLVPGYHG 172

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP---LDLLQSSSWNHG-DQ 165
           +   +D        I  P +IKP  GG   G+ +++  +      L   + ++ + G + 
Sbjct: 173 HEQDIDHMKSEAEKIGYPIIIKPTHGGGGKGMRIVQSGKDFADSFLGAQREAAASFGVNT 232

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           +L+E+Y+     +   V+               +   +  K+ ++   +         + 
Sbjct: 233 ILLEKYITRPRHIEVQVVSRE----ISCCFFFHERLIFGDKHGNVLHLYERDC----SVQ 284

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +  Q++   A  A+G       +F+ D  S + +++E+N 
Sbjct: 285 RRHQKIIEEAPAAVGYYNAGTVEFIVDTESDQFYFMEMNT 324


>gi|319778582|ref|YP_004129495.1| Biotin carboxylase of acetyl-CoA carboxylase [Taylorella
           equigenitalis MCE9]
 gi|317108606|gb|ADU91352.1| Biotin carboxylase of acetyl-CoA carboxylase [Taylorella
           equigenitalis MCE9]
          Length = 448

 Score = 79.4 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 36/222 (16%), Positives = 84/222 (37%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +      +     DK+ +KQ +   GVPV P    
Sbjct: 77  AIHPGYGFLSENPDFAERVEHSGFVFIGPTPDSIRTMGDKVSAKQAMIKAGVPVVPGSEG 136

Query: 112 ---LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGD 164
                 +  ++  + +  P +IK   GG   G+ V+  + ++   +     ++ +     
Sbjct: 137 ALPNDPQEIVNLANRVGYPVIIKAAGGGGGRGMRVVHTEAALLNAVQTTKTEALAAFGNP 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
           ++ +E++++    +   V+GD       +            K          PA  I  D
Sbjct: 197 EVYMEKFLENPRHIEIQVLGDGLGQAVWLWERDCSMQRRHQK-----VIEEAPAPGIDRD 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +++      A + +  RG    +FL+   + + +++E+N 
Sbjct: 252 LIEKIGERCVKACKNMKYRGAGTFEFLY--ENGQFYFIEMNT 291


>gi|56808222|ref|ZP_00365996.1| COG0458: Carbamoylphosphate synthase large subunit (split gene in
           MJ) [Streptococcus pyogenes M49 591]
          Length = 1023

 Score = 79.4 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 39/292 (13%), Positives = 100/292 (34%), Gaps = 32/292 (10%)

Query: 24  SALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH-----G---NFGEDG 66
            A++ AG++   +         D   S  L    L  +   NV+      G    FG   
Sbjct: 579 KAIQKAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIDLEQPKGVIVQFGGQT 638

Query: 67  LV---QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQ 121
            +   QA+ E   +    + +     + D+   ++ +   G+P             + + 
Sbjct: 639 AINLAQALSE-AGVTILGTQVEDLDRAEDRDLFEKALKELGIPQPQGQTATNEEEALQAA 697

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
             I  P +++P        + +++  + +   +  +   +    +L++ Y+ G E     
Sbjct: 698 KKIGFPVLVRPSYVLGGRAMEIVENKEDLREYIRTAVKASPEHPILVDSYIFGKECEVDA 757

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241
           + D    +    +   +  S    +S  +     P ++   I + +          + C 
Sbjct: 758 ISDGKSVLIPAIMEHIERASV---HSGDSMAVYPPQQLSKQIQETIAEYTKRLAIGLNCI 814

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           G+    F+    + +V+ +E+N +   T     P ++   G    ++   ++
Sbjct: 815 GMMNVQFVI--KNEQVYVIEVNPRASRT----VPFLSKVTGIPMAQIATKLI 860



 Score = 69.8 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 50/296 (16%), Positives = 107/296 (36%), Gaps = 34/296 (11%)

Query: 25  ALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNVLHGNFG 63
           AL++ G+KV  ++        D+ +                ++   +PD     L G  G
Sbjct: 36  ALKEEGYKVILVNSNPATIMTDKEIADKVYIEPLTLEFVNRIIRKERPDAILPTLGGQTG 95

Query: 64  EDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFT 117
            +  +      IL+ LEI    + + A   + D+   KQ++     P+  S +V      
Sbjct: 96  LNMAMALSKAGILDDLEIELLGTKLSAIDQAEDRDLFKQLMQELDQPIPESTIVKTVDEA 155

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IE 176
           +     I  P +++P       G  +   ++ +          +   Q LIE+ + G  E
Sbjct: 156 VTFARDIGYPVIVRPAFTLGGTGGGICSSEEELCEITENGLKLSPVTQCLIERSIAGFKE 215

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +   VM D++ +   + V   + +     ++  +        +     + ++  +    +
Sbjct: 216 IEYEVMRDSADNA--LVVCNMENFDPVGIHTGDSIVFAPTQTLSDIENQMLRDASLKIIR 273

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           A+   G        DP S K + +E+N  P ++  S     +   GY   +L   +
Sbjct: 274 ALKIEGGCNVQLALDPYSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAKI 325


>gi|260427594|ref|ZP_05781573.1| methylcrotonoyl-CoA carboxylase subunit alpha [Citreicella sp.
           SE45]
 gi|260422086|gb|EEX15337.1| methylcrotonoyl-CoA carboxylase subunit alpha [Citreicella sp.
           SE45]
          Length = 666

 Score = 79.4 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 75/221 (33%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      LE   + +      A     DK+ SK++    GV   P  + 
Sbjct: 77  AVHPGYGFLSENPRFADALEAAGVAFVGPPKGAIEAMGDKITSKKIAQEAGVNTVPGYMG 136

Query: 114 NRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGD 164
                D        I  P +IK   GG   G+ +   DQ             +SS+   D
Sbjct: 137 LIEDADEAVKISGEIGYPVMIKASAGGGGKGMRIAWNDQEAREGFQSSKNEAASSFG-DD 195

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           ++ IE++V     +   V+ DA  +   +   +        K             +  + 
Sbjct: 196 RIFIEKFVTQPRHIEIQVLCDAHGNGLWLNERECSIQRRNQK----VVEEAPSPFLDPET 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            K +   A    +A+G       +F+ D      ++LE+N 
Sbjct: 252 RKAMGEQAVALAKAVGYTSAGTVEFIVDGEKN-FYFLEMNT 291


>gi|207110562|ref|ZP_03244724.1| D-alanyl-alanine synthetase A [Helicobacter pylori HPKX_438_CA4C1]
          Length = 97

 Score = 79.4 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 25/96 (26%), Positives = 47/96 (48%), Gaps = 3/96 (3%)

Query: 68  VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI--- 124
           + ++LE   I +    I AS LS +K  +K      G+     +LVN     +   +   
Sbjct: 1   LASLLEFYRIAFIGPRIEASVLSYNKYLTKLYAKDLGIKTLDHVLVNEKNRANALDLIGF 60

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160
           + P+++KP   GSSLG+ V+K+++ +   L  +  +
Sbjct: 61  NFPFIVKPSNAGSSLGVNVVKEEKELVYALDSAFEY 96


>gi|89099591|ref|ZP_01172466.1| acetyl-CoA carboxylase [Bacillus sp. NRRL B-14911]
 gi|89085744|gb|EAR64870.1| acetyl-CoA carboxylase [Bacillus sp. NRRL B-14911]
          Length = 458

 Score = 79.4 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 31/198 (15%), Positives = 73/198 (36%), Gaps = 14/198 (7%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIK 131
            I +         L  DK+ S+  ++  GV V P     +      +     +  P ++K
Sbjct: 109 GIVFIGPSPETIELMGDKIVSRDTMAKAGVAVVPGSSEGVATLEEAISLADEMGYPVMLK 168

Query: 132 PLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGDQLLIEQYVD-GIELTCGVMGDAS 186
              GG  +G+I  + +Q++         ++ ++   D++ +E+Y+     +   + GD+ 
Sbjct: 169 ASGGGGGIGMIRCENEQALAKSYESTKARAKAYFGSDEVFVEKYIPNARHIEVQIFGDSF 228

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRS 246
            ++  +            K             +     + + + A  A +A+G       
Sbjct: 229 GNLVHLYERDCSIQRRHQK----VVEESPSPFLSEGTRQNMLKTALRAGEAVGYVNAGTV 284

Query: 247 DFLFDPLSRKVFWLEINV 264
           +F+ D      ++LE+N 
Sbjct: 285 EFIVDEEEN-FYFLEMNT 301


>gi|330980528|gb|EGH78631.1| acetyl-CoA carboxylase biotin carboxylase subunit [Pseudomonas
           syringae pv. aptata str. DSM 50252]
          Length = 336

 Score = 79.4 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 78/221 (35%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      +E   + +         +  DK+ +K+ +   GVP  P    
Sbjct: 77  AIHPGYGFLSENAAFAERIEQAGLTFIGPSAACIRVMGDKVAAKRAMREAGVPCVPGPDT 136

Query: 114 NRFT-----MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GD 164
           +        +     I  P ++K   GG   G+ V++++  +   +  +           
Sbjct: 137 SMPDDPHSILQIARDIGYPVIVKAAGGGGGRGMRVVQEESQLLDAIALTREEARHAFGNP 196

Query: 165 QLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           +L IE+++     +   V+ DA  +   +            K             I   +
Sbjct: 197 ELYIEKFLGQPRHVEIQVLCDAYGNAVWLGSRDCSMQRRHQKVL----EEAPAPGIDAAL 252

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              V      A + +G +G+   +FLF+    + +++E+N 
Sbjct: 253 MARVGERCAQACRQMGYQGVGTFEFLFEK--DEFYFIEMNT 291


>gi|332701280|ref|ZP_08421368.1| carbamoyl-phosphate synthase, large subunit [Desulfovibrio
           africanus str. Walvis Bay]
 gi|332551429|gb|EGJ48473.1| carbamoyl-phosphate synthase, large subunit [Desulfovibrio
           africanus str. Walvis Bay]
          Length = 1140

 Score = 79.4 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 48/278 (17%), Positives = 100/278 (35%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G++V  +         D +              V  ++   +PD    
Sbjct: 92  SGTQAVKALKEEGYEVVLVNSNPATIMTDPELADRTYIEPITPEVVAKIIEKERPDALLP 151

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G  G +  +      +L+   +    +  +A   +  +   ++ ++  G+ V  S +
Sbjct: 152 TLGGQTGLNTALAVAESGVLDQFGVELIGASQVAIRKAESRQEFREAMARIGLKVPESGI 211

Query: 113 VNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                   +    I+ P +++P       G  V    + +     +    +   ++++EQ
Sbjct: 212 ARNMDDVREWGQKIAFPIIVRPAFTLGGTGGGVAYNMEDLEAIAGRGLDASVKSEVMLEQ 271

Query: 171 YVDG-IELTCGVMGDASL-DVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            V G  E    VM D +   V   ++   D           +S  V PA+ +  D Y+++
Sbjct: 272 SVLGWKEYELEVMCDTAGNGVIICSIENLDPMGVHT----GDSITVAPAQTLTDDEYQKM 327

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  A    + IG   G S   F  +P    +  +E+N 
Sbjct: 328 RDAALAIMREIGVSTGGSNVQFAVNPADGDMVIIEMNP 365



 Score = 58.2 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 36/226 (15%), Positives = 80/226 (35%), Gaps = 14/226 (6%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTMDSQHLISPPYVIKPL 133
            +    +   +   + D+ R + +++   +   P+         +     I  P V++P 
Sbjct: 725 GVKILGTSPDSIDRAEDRERFQALLNKLDLKQPPNATAFSEGEALIKAQKIGYPVVVRPS 784

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEI 192
                  + +I   + +     +         +L++Q+++  IE+    + D +      
Sbjct: 785 YVLGGRAMAIIYSPEELSAYFKKEVLVAPEHPILVDQFLENAIEVDVDALSDGTDTYVAG 844

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
            +   +    E    S +S  V+P   I  ++  E++R      Q +G  G+    F   
Sbjct: 845 IMEHIE----EAGIHSGDSACVIPPHTISKELQAEIERQTIALAQELGVVGLMNIQFAI- 899

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
                VF LE+N +   T     P ++   G     L   ++  AS
Sbjct: 900 -KDDVVFILEVNPRASRTA----PFVSKATGVPLPRLATQIMLGAS 940


>gi|187776771|ref|ZP_02993244.1| hypothetical protein CLOSPO_00287 [Clostridium sporogenes ATCC
           15579]
 gi|187775430|gb|EDU39232.1| hypothetical protein CLOSPO_00287 [Clostridium sporogenes ATCC
           15579]
          Length = 1144

 Score = 79.4 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 79/222 (35%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+           I +            DK++SK V    GVP  P +  
Sbjct: 80  AIHPGYGFLSENSEFARKCREAGIEFIGPTADMMEKLGDKIKSKIVAEKAGVPTIPGVQK 139

Query: 114 ----NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP-----LDLLQSSSWNHGD 164
                +  ++       P ++K   GG   G+ +++ ++ +             ++   D
Sbjct: 140 PIKSEKEALEFARYCGYPIMLKAAAGGGGRGMRIVRTEEELISSFKSAKNEAKKAFGIDD 199

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + IE+Y++    +   ++GD   ++  +            K          PA  +P +
Sbjct: 200 -IFIEKYLENPKHIEVQILGDKHGNIVHLHERDCSIQRRHQK-----VIEFTPAFALPKE 253

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +E+   A    + +G R     +FL D      +++E+N 
Sbjct: 254 KREEICSDALKIAKTVGYRSAGTLEFLVDTSGHH-YFIEMNP 294


>gi|196036698|ref|ZP_03104090.1| putative acetyl-CoA carboxylase, biotin carboxylase [Bacillus
           cereus W]
 gi|228933835|ref|ZP_04096681.1| Biotin carboxylase [Bacillus thuringiensis serovar andalousiensis
           BGSC 4AW1]
 gi|228946185|ref|ZP_04108518.1| Biotin carboxylase [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
 gi|195990662|gb|EDX54638.1| putative acetyl-CoA carboxylase, biotin carboxylase [Bacillus
           cereus W]
 gi|228813476|gb|EEM59764.1| Biotin carboxylase [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
 gi|228825907|gb|EEM71694.1| Biotin carboxylase [Bacillus thuringiensis serovar andalousiensis
           BGSC 4AW1]
          Length = 445

 Score = 79.4 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 81/220 (36%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       +   I +             K+ S+  + +  VPV P I  
Sbjct: 77  AIHPGYGLLSENPSFPVRCKEEGIVFIGPSEEIITKMGSKIESRIAMQAADVPVVPGITT 136

Query: 114 N----RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
           N       ++    I  P ++K   GG  +G+ +++ +Q++         ++ ++    +
Sbjct: 137 NIETAEEAIEIAKQIGYPLMLKASAGGGGIGMQLMETEQTLTKAFESNKTRAQNFFGNGE 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+Y+ D   +   ++ D   +   +   +        K             +  D  
Sbjct: 197 MYLERYIADAHHIEIQLLADTHGNTVYLWERECSVQRRNQK----VIEEAPSPFLDEDTR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K +  +A  A +A+G       +FL D      ++LE+N 
Sbjct: 253 KAMGEVAVQAAKALGYTNAGTVEFLVDEQKN-FYFLEMNT 291


>gi|218903677|ref|YP_002451511.1| putative acetyl-CoA carboxylase, biotin carboxylase [Bacillus
           cereus AH820]
 gi|229122086|ref|ZP_04251302.1| Biotin carboxylase [Bacillus cereus 95/8201]
 gi|218538911|gb|ACK91309.1| putative acetyl-CoA carboxylase, biotin carboxylase [Bacillus
           cereus AH820]
 gi|228661429|gb|EEL17053.1| Biotin carboxylase [Bacillus cereus 95/8201]
          Length = 445

 Score = 79.4 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 81/220 (36%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       +   I +             K+ S+  + +  VPV P I  
Sbjct: 77  AIHPGYGLLSENPSFPVRCKEEGIVFIGPSEEIITKMGSKIESRIAMQAADVPVVPGITT 136

Query: 114 N----RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
           N       ++    I  P ++K   GG  +G+ +++ +Q++         ++ ++    +
Sbjct: 137 NIETAEEAIEIAKQIGYPLMLKASAGGGGIGMQLMETEQTLTKAFESNKTRAQNFFGNGE 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+Y+ D   +   ++ D   +   +   +        K             +  D  
Sbjct: 197 MYLERYIADAHHIEIQLLADTHGNTVYLWERECSVQRRNQK----VIEEAPSPFLDEDTR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K +  +A  A +A+G       +FL D      ++LE+N 
Sbjct: 253 KAMGEVAVQAAKALGYTNAGTVEFLVDEQKN-FYFLEMNT 291


>gi|312140935|ref|YP_004008271.1| acetyl-CoA carboxylase alpha subunit acca [Rhodococcus equi 103S]
 gi|311890274|emb|CBH49592.1| acetyl-CoA carboxylase alpha subunit AccA [Rhodococcus equi 103S]
          Length = 674

 Score = 79.4 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 34/197 (17%), Positives = 74/197 (37%), Gaps = 16/197 (8%)

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSI----LVNRFTMDSQHLISPPYVIKPLK 134
           +      A  +  DK+ +K  V++  VPV P I    L +   + +   I  P ++KP  
Sbjct: 105 FLGPSARAIEVMGDKITAKNAVAAFDVPVVPGIARPGLSDAELIAAADDIGYPVLVKPSA 164

Query: 135 GGSSLGIIVIKKDQSIPLDLL-----QSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           GG   G+ +++    +P  L+      +S++   D L +E++V     +   ++ D   +
Sbjct: 165 GGGGKGMRLVEDAADLPGALVSARREAASAFG-DDTLFLERFVLRPRHIEVQILADGHGN 223

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           V  +   +        K             +       +   A    +++   G    +F
Sbjct: 224 VVHLGERECSLQRRHQK----VIEEAPSPLLDAATRARIGAAACDTARSVDYTGAGTVEF 279

Query: 249 LFDPLS-RKVFWLEINV 264
           +       + F++E+N 
Sbjct: 280 IVSADRPDEFFFMEMNT 296


>gi|228927604|ref|ZP_04090656.1| Biotin carboxylase [Bacillus thuringiensis serovar pondicheriensis
           BGSC 4BA1]
 gi|228832084|gb|EEM77669.1| Biotin carboxylase [Bacillus thuringiensis serovar pondicheriensis
           BGSC 4BA1]
          Length = 445

 Score = 79.4 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 81/220 (36%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       +   I +             K+ S+  + +  VPV P I  
Sbjct: 77  AIHPGYGLLSENPSFPVRCKEEGIVFIGPSEEIITKMGSKIESRIAMQAADVPVVPGITT 136

Query: 114 N----RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
           N       ++    I  P ++K   GG  +G+ +++ +Q++         ++ ++    +
Sbjct: 137 NIETAEEAIEIAKQIGYPLMLKASAGGGGIGMQLMETEQTLTKAFESNKTRAQNFFGNGE 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+Y+ D   +   ++ D   +   +   +        K             +  D  
Sbjct: 197 MYLERYIADAHHIEIQLLADTHGNTVYLWERECSVQRRNQK----VIEEAPSPFLDEDTR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K +  +A  A +A+G       +FL D      ++LE+N 
Sbjct: 253 KAMGEVAVQAAKALGYTNAGTVEFLVDEQKN-FYFLEMNT 291


>gi|327402510|ref|YP_004343348.1| methylcrotonoyl-CoA carboxylase [Fluviicola taffensis DSM 16823]
 gi|327318018|gb|AEA42510.1| Methylcrotonoyl-CoA carboxylase [Fluviicola taffensis DSM 16823]
          Length = 494

 Score = 79.4 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 41/219 (18%), Positives = 79/219 (36%), Gaps = 17/219 (7%)

Query: 58  LHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
           +H  +G   E+      ++   I +      A  L  DK+ +KQ V +  VP+ P +   
Sbjct: 77  IHPGYGFLSENAGFARKVKEAGIKFIGPSPEAMELMGDKLSAKQAVKNYNVPLVPGVDEA 136

Query: 115 RFTMDSQHLI----SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQL 166
              +++   I      P +IK   GG   G+ +++        +  + S        D +
Sbjct: 137 ITDVEAAKKIAAEVGFPILIKASAGGGGKGMRLVENVGEFEEQMKMAQSEARSSFGDDAV 196

Query: 167 LIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
            IE++V     +   V  D   +V  +   +        K           A +  ++ K
Sbjct: 197 FIEKFVTKPRHIEIQVFADQLGNVVYLFERECSIQRRHQK----VIEEAPSAILSPELRK 252

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           ++   A    +A    G    +FL D      ++LE+N 
Sbjct: 253 KMGEAAVAVCKACNYEGAGTVEFLLDAELN-FYFLEMNT 290


>gi|262051261|ref|ZP_06023485.1| hypothetical protein SA930_1692 [Staphylococcus aureus 930918-3]
 gi|259160898|gb|EEW45918.1| hypothetical protein SA930_1692 [Staphylococcus aureus 930918-3]
          Length = 453

 Score = 79.4 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 41/220 (18%), Positives = 79/220 (35%), Gaps = 18/220 (8%)

Query: 56  NVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
           N +H  +G   E       +E   I +         +  DK+ ++Q V   GVPV P   
Sbjct: 75  NAIHPGYGFLSESTKFAQTVEEQGIAFIGPTKKTMEMMGDKITARQTVHHAGVPVIPGSN 134

Query: 111 --ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS----WNHGD 164
             +       +    I  P VIK   GG   GI ++KK + +     ++ S    +   D
Sbjct: 135 GAVNHVSEIENLAKDIGYPVVIKAASGGGGKGIRIVKKAEDLEKAFKEAKSEGKKYFDDD 194

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            + +E ++     +   VMGD   +   +            + +         A +  + 
Sbjct: 195 SVYVEAFIPVAKHVEVQVMGDGQDNYVHLGERDCSV----QRKNQKLIEESPCAALTEER 250

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            +++   A    +A   R     +FL    +   +++E+N
Sbjct: 251 RQQICNDAVKVARAANYRSAGTIEFLVTDTAH--YFIEMN 288


>gi|164687301|ref|ZP_02211329.1| hypothetical protein CLOBAR_00942 [Clostridium bartlettii DSM
           16795]
 gi|164603725|gb|EDQ97190.1| hypothetical protein CLOBAR_00942 [Clostridium bartlettii DSM
           16795]
          Length = 450

 Score = 79.4 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 38/219 (17%), Positives = 81/219 (36%), Gaps = 17/219 (7%)

Query: 58  LHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS---- 110
           +H  FG   E+     + E   I Y         L  +K ++++V+    VPV P     
Sbjct: 78  IHPGFGFLSENPKFAKMCEECNIKYIGPDYKIIELMGNKAKAREVMKKANVPVVPGYEGE 137

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSWNHGDQL 166
           I      ++    I  P +IK   GG   GI ++ ++           L+S +    D++
Sbjct: 138 ITSVSQALEIAKEIGFPVMIKAAAGGGGKGIRIVNEEGEFEHNYNAAKLESKACFSDDRI 197

Query: 167 LIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
            IE+++     +   ++ D   +   +   +        K             +   + +
Sbjct: 198 YIEKFIQKPRHIEFQILADEYGNTIHLGERECSLQRNNQKVL----EEAPSTFLNPKLRE 253

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           ++  +A  A +A+  +     +FL D      +++E+N 
Sbjct: 254 KMGEVAKCAAKAVNYKNAGTIEFLVDKDCN-FYFMEMNT 291


>gi|297545468|ref|YP_003677770.1| carbamoyl-phosphate synthase, large subunit [Thermoanaerobacter
           mathranii subsp. mathranii str. A3]
 gi|296843243|gb|ADH61759.1| carbamoyl-phosphate synthase, large subunit [Thermoanaerobacter
           mathranii subsp. mathranii str. A3]
          Length = 1072

 Score = 79.4 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 54/287 (18%), Positives = 107/287 (37%), Gaps = 35/287 (12%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI---------DVDRS------------VGLV 45
           G ++E + S   G     +L++ G +V  +         D D +            V  +
Sbjct: 21  GQAAEFDYS---GTQACKSLKEEGLQVVLVNNNPATIMTDTDIADIVYIENPTVCVVEKI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +A  KPD     L G  G +  V    + IL+   +    +   +   + D+   K+ + 
Sbjct: 78  IAKEKPDGILATLGGQTGLNLAVKLKEEGILDKYNVKLLGTSFESIKTAEDRELFKRKMQ 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G PV  S+ V      +        P +I+P       G  +   D+ +   +     
Sbjct: 138 EIGEPVAESVTVTNIEDALKFAKNYGYPLIIRPAYTLGGTGGGIAHNDEELISIVSLGLK 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   ++L+E+ + G  E+   VM DA  +   I     + +     ++  +S  V P +
Sbjct: 198 KSMVGEVLVEKSLYGWKEIEFEVMRDADDNCITIC--SMENFDPVGVHT-GDSIVVAPVQ 254

Query: 219 -IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +    Y+ ++  +    +A+   G     F  DP S K + +E+N 
Sbjct: 255 TLSDYEYQMLRSASIKIIKALKIEGGCNIQFALDPESHKYYVIEVNP 301



 Score = 73.6 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 33/224 (14%), Positives = 77/224 (34%), Gaps = 16/224 (7%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--SILVNRFTMDSQHLISPPYVIKPL 133
            +    +   +  +S D+ +  +++    +        L      D    +  P +++P 
Sbjct: 650 GVKILGTSYESIDISEDREKFSKLLKELNINQPKGDYALTVEDAKDIALKLGFPLLVRPS 709

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
                  +  +   Q +   +  ++  + G  +LI++Y+DG E+    + D    +    
Sbjct: 710 YVIGGQSMEKVNTLQELIDYVKHATEISPGKPILIDKYIDGREVEIDAVSDGECVLIPGI 769

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
           +   +           +S  + PA+ +       +        +A+  +G+    F    
Sbjct: 770 MEHIERAGVHS----GDSFSIYPARNLSEREINTIIEYTERISKALNVKGLINIQFAVKE 825

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
               V+ LE+N +   T     P M+   G     L+   VE A
Sbjct: 826 --GTVYVLEVNPRASRT----VPIMSKATGVP---LVKLAVEIA 860


>gi|260466757|ref|ZP_05812943.1| pyruvate carboxylase [Mesorhizobium opportunistum WSM2075]
 gi|259029487|gb|EEW30777.1| pyruvate carboxylase [Mesorhizobium opportunistum WSM2075]
          Length = 1152

 Score = 79.4 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 78/221 (35%), Gaps = 18/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E            I +            +K+ ++ +    GVPV P+   
Sbjct: 85  AIHPGYGLLSESPEFAEACAQAGITFIGPKPDTMRRLGNKVAARNLAIEVGVPVIPATDP 144

Query: 114 NRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGDQ 165
               MD+       I  P ++K   GG   G+  I+ +  +  ++     ++ +    D+
Sbjct: 145 LPDDMDAVKKLAKEIGYPVMLKASWGGGGRGMRAIRAEADLAREVTEGKREAKAAFGKDE 204

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           + +E+ ++    +   V+GD   +   +            K          PA  + +  
Sbjct: 205 VYLEKLIERARHVEVQVLGDTHGNAVHLFERDCSIQRRNQK-----VVERAPAPYLEMSQ 259

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +E+   A    +     G    +FL D  + K +++E+N 
Sbjct: 260 REELCGHALKIARETSYIGAGTVEFLQDADTGKFYFIEVNP 300


>gi|253731725|ref|ZP_04865890.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253724539|gb|EES93268.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
          Length = 1150

 Score = 79.4 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 33/221 (14%), Positives = 76/221 (34%), Gaps = 20/221 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+           I +    +    +  DK++++       +PV P    
Sbjct: 80  AIHPGYGFLSENEQFARRCAEEGIKFIGPHLEHLDMFGDKVKARTTAIKADLPVIPGTDG 139

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
            I       +       P +IK   GG   G+ +++++  +     ++ S         +
Sbjct: 140 PIKSYELAKEFAEEAGFPLMIKATSGGGGKGMRIVREESELEDAFHRAKSEAEKSFGNSE 199

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDI 223
           + IE+Y+D    +   V+GD   ++              ++        V P   +   +
Sbjct: 200 VYIERYIDNPKHIEVQVIGDEHGNIV-----HLFERDCSVQRRHQKVVEVAPSVGLSPTL 254

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +   A    + I        +FL      ++F++E+N 
Sbjct: 255 RQRICDAAIQLMENIKYVNAGTVEFLV--SGDELFFIEVNP 293


>gi|227892685|ref|ZP_04010490.1| carbamoyl-phosphate synthase [Lactobacillus ultunensis DSM 16047]
 gi|227865462|gb|EEJ72883.1| carbamoyl-phosphate synthase [Lactobacillus ultunensis DSM 16047]
          Length = 1062

 Score = 79.4 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 40/268 (14%), Positives = 88/268 (32%), Gaps = 34/268 (12%)

Query: 22  CASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ--- 69
           C  AL+  G++   I         D   S  L    L  +   NV      E  +VQ   
Sbjct: 577 CVKALQKMGYEAIVINSNPETVSTDFSISDKLYFEPLTLEDVLNVCDLEKPEGVIVQFGG 636

Query: 70  -------AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDS 120
                  A LE   I    + +     + D+    +++    +     +        +++
Sbjct: 637 QTSINLAAGLEKHGIKILGTKVKDVNRAEDRELFDEIIKKLHLNQPQGLTATTHEGVLEA 696

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P +++P        + ++     +   L           +L++ Y+DG E    
Sbjct: 697 ADKLGYPVLVRPSYVLGGKAMEIVYNKSELEEYLHDHVDIAADHPILVDDYLDGRECDVD 756

Query: 181 VMGDAS---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQ 236
            + D     L      +  +  +S        +S  V P +    ++ +++  +      
Sbjct: 757 AICDGKDVLLPGIMEHIEHAGVHS-------GDSMAVYPPQTFSDEVKEKITDVTRKLAL 809

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + C GI    F+    + +V+ +E+N 
Sbjct: 810 TLNCIGIMNIQFIVR--NGEVYVIEVNP 835



 Score = 75.2 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 49/289 (16%), Positives = 98/289 (33%), Gaps = 39/289 (13%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI---------DVD------------RSVGLV 45
           G ++E + S   G     AL + G++V  +         D               S+  +
Sbjct: 21  GQAAEFDYS---GTQACLALREEGYEVVLVNSNPATIMTDTTIADKVYIEPLTVESISRI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +    PD     L G  G +  ++     IL+ L I    + + +   + D+ + K++  
Sbjct: 78  IRQEYPDAILPTLGGQVGLNMAMELAKTGILDELHIELLGTKLDSIEQAEDREKFKELCK 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G PV PS  VN     +     I  P +++P       G  +    + +         
Sbjct: 138 KLGEPVPPSKTVNTVEDALAFGDEIGYPIIVRPAFTMGGTGGGICNNREELAEIAKNGLE 197

Query: 160 WNHGDQLLIEQYVDG---IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216
            +   + LIE+ + G   IE       D +  +            +     + +S    P
Sbjct: 198 LSPVTECLIEKSIAGYKEIEFEVMRDHDDNAMIVCCMENFDPVGIH-----TGDSIVFSP 252

Query: 217 AK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           ++ +    Y+ ++  +    +A+   G        DP S     +E+N 
Sbjct: 253 SQTLSDKEYQMLRDCSLRLIRALKIEGGCNVQLALDPNSFNYDVIEVNP 301


>gi|156742833|ref|YP_001432962.1| carbamoyl-phosphate synthase L chain ATP-binding [Roseiflexus
           castenholzii DSM 13941]
 gi|156234161|gb|ABU58944.1| Carbamoyl-phosphate synthase L chain ATP-binding [Roseiflexus
           castenholzii DSM 13941]
          Length = 493

 Score = 79.4 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 43/261 (16%), Positives = 82/261 (31%), Gaps = 33/261 (12%)

Query: 14  VSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILE 73
           V LSSG     A        + + + R  G     + P   F   H  F          E
Sbjct: 49  VRLSSGALYCDA-------AALVQIARDCGA--DAIHPGYGFLAEHEEFAR------ACE 93

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVNRFTM--DSQHLISPP 127
              I +        A   DK+    +V + G+ V          + +    D+   +  P
Sbjct: 94  ESGIAFIGPSSTMLAKVCDKIAVLDMVRTAGIAVPRHSPRAYRASEWEALRDAAEGLGYP 153

Query: 128 YVIKPLKGGSSLGIIVIKKDQSI-----PLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            V+K   GG S    ++ +   +            + +      L E ++    L   ++
Sbjct: 154 LVLKSYSGGRSHSTRLVHEPTHLGSIAQHAHSAALTEFGDERLYLEEAFLPARYLEVQLV 213

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCR 241
           GD   ++  +             ++        PA  +     + + R A    + +GC 
Sbjct: 214 GDRHGNLVHLGERDGSIQ-----HNHRKVMEESPAPYLTDAQRENLWRQALTIGRLLGCM 268

Query: 242 GISRSDFLFDPLSRKVFWLEI 262
           G    +F+ D   R  ++ E+
Sbjct: 269 GACTIEFVLDAQGR-FYFTEV 288


>gi|78221670|ref|YP_383417.1| putative glycolate oxidase [Geobacter metallireducens GS-15]
 gi|78192925|gb|ABB30692.1| putative glycolate oxidase [Geobacter metallireducens GS-15]
          Length = 404

 Score = 79.4 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 45/239 (18%), Positives = 89/239 (37%), Gaps = 26/239 (10%)

Query: 29  AGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
            G      +  + VGL  A    D+A             V A+ E L +P     +  + 
Sbjct: 59  EGHVAWAREHGKRVGLKGAFAGADVAI-----------TVAAVCEELGLP--GVPVEVAR 105

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI--SPPYVIKPLKGGSSLGIIVIKK 146
            S +K   K+      +P   S   +      + L+    P ++K + G +S G + I +
Sbjct: 106 RSNNKALMKERWLRDKIPTPWSAEASTLEEAQKILVHTGFPAIVKAVDGAASRGSMRIDR 165

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG--VMGDASLDVTEIAVPKSDFYSYEL 204
              +P     + + +     +IEQ+V G E +    +       V+ +A     F  Y +
Sbjct: 166 PDQLPAAFKAACATSRTGTAIIEQFVVGKEQSVETIIWKGKHYHVS-LADRHFGFAPYAI 224

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEI 262
           +     + HV P+ +  +  K +  +   A  ++G   G +++D +          LE+
Sbjct: 225 E-----TAHVDPSNLDKETQKRICEVVDAAADSLGIDFGPAKADMILTDQG--PMILEM 276


>gi|33600433|ref|NP_887993.1| carbamoyl phosphate synthase large subunit [Bordetella
           bronchiseptica RB50]
 gi|33568032|emb|CAE31945.1| carbamoyl-phosphate synthase large chain [Bordetella bronchiseptica
           RB50]
          Length = 1080

 Score = 79.4 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 45/298 (15%), Positives = 107/298 (35%), Gaps = 35/298 (11%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ------ 69
           AL + G++   +         D D S  L    L  +    ++H       +VQ      
Sbjct: 589 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVHKENPVGMIVQYGGQTP 648

Query: 70  ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL-- 123
                 LE   +P   +   +  ++ D+ R +++++  G+   P+           H   
Sbjct: 649 LKLARALEANGVPIIGTSPESIDVAEDRERFQKLLNKLGLRQPPNRTARTEAEALAHASE 708

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVM 182
           I  P V++P        + ++ + Q +   + ++   ++   +L+++++ D  E+    +
Sbjct: 709 IGYPLVVRPSYVLGGRAMEIVHEQQDLERYMREAVKVSNDSPVLLDRFLNDATEVDVDCL 768

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D         +   +       +S  ++  + P  +  ++  E++R   +  +A+   G
Sbjct: 769 ADGQTVFIGGVMEHIEQAGV---HSGDSACSLPPYSLSAEVIAEIKRQTTMMAKALNVSG 825

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           +    F        V+ LE+N +   T     P ++   G      L  +   A   R
Sbjct: 826 LMNVQFAI--QGGDVYVLEVNPRASRT----VPYVSKATGLQ----LAKIAARAMAGR 873



 Score = 59.4 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 46/285 (16%), Positives = 99/285 (34%), Gaps = 42/285 (14%)

Query: 18  SGKACASALEDAGF-------------------KVSQIDVD--RSVGLVLAHLKPDLAFN 56
           SG     AL+  G+                    V+ I+    ++V  ++   KPD    
Sbjct: 29  SGAQACKALKAEGYRTILVNSNPATIMTDPETADVTYIEPITWQAVEKIIEREKPDALLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      +L+   +    +   A   + D+ + KQ ++  G+    S +
Sbjct: 89  TMGGQTALNCALDLAHHGVLKKHNVELIGANEHAIEKAEDRQKFKQAMTDIGLESAKSGV 148

Query: 113 VNRFTMDSQ---------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
            +      +              P VI+P       G  +    +   +   +    +  
Sbjct: 149 AHSMDEAWEVQRRIAADIGTAGFPVVIRPSFTLGGSGGGIAYNAEEFEVICRRGLEASPT 208

Query: 164 DQLLIEQYVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IP 220
            +LLIE+ + G  E    V+ D + + +   ++   D           +S  V PA+ + 
Sbjct: 209 KELLIEESLLGWKEFEMEVVRDKADNCIIVCSIENLDPMGVHT----GDSITVAPAQTLT 264

Query: 221 LDIYKEVQRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
              Y+ ++  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 DKEYQIMRNASIAVLREIGVDTGGSNVQFAVNPQNGRMIVIEMNP 309


>gi|288930712|ref|YP_003434772.1| carbamoyl-phosphate synthase, large subunit [Ferroglobus placidus
           DSM 10642]
 gi|288892960|gb|ADC64497.1| carbamoyl-phosphate synthase, large subunit [Ferroglobus placidus
           DSM 10642]
          Length = 1081

 Score = 79.4 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 53/289 (18%), Positives = 105/289 (36%), Gaps = 38/289 (13%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI---------DVD------------RSVGLV 45
           G ++E + S   G     AL + G++V  +         D +              V  +
Sbjct: 21  GQAAEFDYS---GSQACKALREEGYEVVLVNSNPATIMTDPEMADKTYIEPLTPEVVAKI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +    PD     L G    +  V+     +L+   +    + + A   + D+   K+ + 
Sbjct: 78  IERETPDALLPTLGGQTALNIAVKLHEMGVLDKYGVELIGANVDAIKKAEDRDLFKKAME 137

Query: 102 SCGVPVCPSILVNR--FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
           + G+ V  S +       +     +  P V++P       G  +    + +   + +   
Sbjct: 138 NIGLEVPRSEIAESVSDALTIAEELGYPVVVRPAFTLGGTGGGIAYNREELKEIVRKGLE 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPA 217
            +   Q+LIE+ V G  E    VM D + +V  I   ++    ++       +S  V PA
Sbjct: 198 LSMIHQVLIEESVIGWKEFELEVMRDKADNVVIICSIEN----FDPMGVHTGDSITVAPA 253

Query: 218 K-IPLDIYKEVQRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           + +    Y+ ++  A    + IG   G S   F   P S +   +E+N 
Sbjct: 254 QTLTDYEYQRLRDAAIAIIREIGVETGGSNIQFAVHPSSDRFLAIEMNP 302



 Score = 65.5 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 44/293 (15%), Positives = 105/293 (35%), Gaps = 36/293 (12%)

Query: 20  KACASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ- 69
            A  S L++ G++   +         D D S  L    +  +   N+      E  LVQ 
Sbjct: 585 HAVYS-LKEEGYETIMVNCNPETVSTDYDTSDRLYFEPITHEDVMNIYENEKPEGVLVQF 643

Query: 70  ---------AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTM 118
                      LE        + + +  ++ D+ R  ++    G+P   + +        
Sbjct: 644 GGQTPLNIAKQLEESGAKILGTSVDSIDIAEDRKRFAEICRKLGIPQPENGIAFSVEEAK 703

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIEL 177
           +    I  P +++P        + ++  ++++   + ++   +    +LI++++ D IE+
Sbjct: 704 EVAKKIGYPVLVRPSYVLGGRAMEIVYDEETLERYIREALEVSPEKPILIDKFLEDAIEV 763

Query: 178 TC-GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAH 235
               V     + +  I       +  E    S +S  VLP + +  ++  ++        
Sbjct: 764 EVDAVCDGEEVLIGGIME-----HIEEAGVHSGDSACVLPPQSLSKEVIDKIIDYTRKL- 817

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
            A+  + I   +  +     +V+ LE N +   T     P ++   G    ++
Sbjct: 818 -ALELKVIGLINVQYAVKDNEVYILEANPRASRT----VPFVSKATGIPLAKI 865


>gi|228476146|ref|ZP_04060854.1| biotin carboxylase [Staphylococcus hominis SK119]
 gi|228269969|gb|EEK11449.1| biotin carboxylase [Staphylococcus hominis SK119]
          Length = 453

 Score = 79.4 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 84/220 (38%), Gaps = 18/220 (8%)

Query: 56  NVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
           N +H  +G   E       +E  +I +         +  DK+ ++Q V S GVPV P   
Sbjct: 75  NAIHPGYGFLSESTTFAQKVEENDIHFIGPNKKTMEMMGDKITARQTVHSAGVPVIPGST 134

Query: 111 --ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS----WNHGD 164
             +       +    I  P V+K   GG   GI ++K++  +   L ++ S    + + D
Sbjct: 135 DAVNSVEEIKELAKDIGYPLVLKAASGGGGKGIRIVKEENQLEKSLKEAKSEGQKYFNDD 194

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           ++ +E ++     +   V+GD   +   +            + +         A +  + 
Sbjct: 195 RVYVEAFIPVAKHIEVQVIGDGKENYVHLGERDCSV----QRKNQKLIEEAPCAALSEER 250

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            +++   A    +A   R     +FL    +   +++E+N
Sbjct: 251 REKICNDAVKVAKASNYRSAGTIEFLVTEEAH--YFIEMN 288


>gi|217979955|ref|YP_002364102.1| acetyl-CoA carboxylase, biotin carboxylase [Methylocella silvestris
           BL2]
 gi|217505331|gb|ACK52740.1| acetyl-CoA carboxylase, biotin carboxylase [Methylocella silvestris
           BL2]
          Length = 452

 Score = 79.4 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 81/220 (36%), Gaps = 18/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            LH  +G   E+     IL    I +         L  DK+ +K+     G+P  P    
Sbjct: 77  ALHPGYGFLSENARFAEILAEHHIVFVGPKPEHIRLMGDKIEAKRTALRLGIPCVPGSAG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS----IPLDLLQSSSWNHGDQ 165
            I        +   +  P ++K   GG   G+ V   ++     +    +++ S    D 
Sbjct: 137 AITDEAEAKAAARELGYPVLVKAAAGGGGRGMKVSFSEEDIASTLETARMEAKSAFGDDS 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+Y++    +   ++GD       +        S + ++  +      PA +     
Sbjct: 197 VYLEKYLEKPRHIEVQILGDGRGGAIHLGERD---CSLQRRHQKVWEEGPSPA-LNESQR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           KE+  +   A + +   G    +FL+     K +++E+N 
Sbjct: 253 KEIGEICAAAMRELQYAGAGTIEFLY--EDGKFYFIEMNT 290


>gi|108804861|ref|YP_644798.1| pyruvate carboxylase [Rubrobacter xylanophilus DSM 9941]
 gi|108766104|gb|ABG04986.1| pyruvate carboxylase [Rubrobacter xylanophilus DSM 9941]
          Length = 1128

 Score = 79.4 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 41/246 (16%), Positives = 90/246 (36%), Gaps = 16/246 (6%)

Query: 28  DAGFKVS-QIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           + G  V   +D+  ++    A +  D  +   +G   E     A  E   I +       
Sbjct: 53  EPGHPVRAYLDIG-ALVGTAARVGADAIYPG-YGFLSESAKFAAACEEAGITFVGPPPEV 110

Query: 87  SALSMDKMRSKQVVSSCGVPVCPS---ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIV 143
            +L+ DK+R+++     GVPV  +   +      + +   +  P  +K   GG   G+ +
Sbjct: 111 LSLTGDKVRAREAAREAGVPVLRASGPVATAEEALAAAEEVGYPVFVKAAGGGGGRGLRM 170

Query: 144 IKKDQSIP----LDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSD 198
           +++ + +P      + ++ +      + +EQ ++    +   ++GDA  +V  +      
Sbjct: 171 VRRARDLPGAVQTAMREAQAAFGNPTVFLEQALEHPRHIEVQILGDAGGEVIHLFERDCS 230

Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
                 K             +   + + +   A    +A+G R     +FL       VF
Sbjct: 231 VQRRHQKVL----EMAPAPNLDPQLRERLCEDAVRFGRAVGYRNAGTVEFLVGEDGSHVF 286

Query: 259 WLEINV 264
             E+N 
Sbjct: 287 I-EMNP 291


>gi|149198157|ref|ZP_01875204.1| pyruvate carboxylase [Lentisphaera araneosa HTCC2155]
 gi|149138759|gb|EDM27165.1| pyruvate carboxylase [Lentisphaera araneosa HTCC2155]
          Length = 1151

 Score = 79.4 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 38/227 (16%), Positives = 85/227 (37%), Gaps = 30/227 (13%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC----- 108
            +H  +G   E+       +   I +    +       DKM +K+V     VP+      
Sbjct: 82  AIHPGYGFLSENAEFAKACKEAGIAFIGPAVSLLEGLGDKMEAKKVAKKAQVPILSGGLE 141

Query: 109 --PSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS-----SSWN 161
               I   R   D    +  P ++K   GG   G+ V+     +   L ++     +++ 
Sbjct: 142 PLRDIAAARAVADD---LGFPVIVKAAHGGGGRGMRVVNSAHELQQKLEEAQRESLTAFG 198

Query: 162 HGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-- 218
             D+  IE+++     +   ++GD   ++  +       Y  +      +   +  A   
Sbjct: 199 -SDECFIEKFIVKAKHIEVQILGDLHGNLVHL-------YDRDCSLQRRHQKIIEVAPSV 250

Query: 219 -IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +P  + +++ + A    +++  +     +FL D  + K F++EIN 
Sbjct: 251 GLPEKLREDICQSAVSICKSVDYQNAGTVEFLLDTETNKFFFIEINP 297


>gi|15672760|ref|NP_266934.1| acetyl-CoA carboxylase biotin carboxylase subunit [Lactococcus
           lactis subsp. lactis Il1403]
 gi|12723697|gb|AAK04876.1|AE006311_7 biotin carboxylase [Lactococcus lactis subsp. lactis Il1403]
 gi|326406330|gb|ADZ63401.1| acetyl-CoA carboxylase biotin carboxylase [Lactococcus lactis
           subsp. lactis CV56]
          Length = 455

 Score = 79.4 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 74/220 (33%), Gaps = 16/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  FG   E+     + E + I +         +  DK+ ++  +   GVPV P    
Sbjct: 77  AIHPGFGFLSENSKFARLCEEMNIKFIGPSAKVMDMMGDKINARAEMIKAGVPVTPGSEG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
            +      +     I  P ++K   GG   GI  +   + +      + +          
Sbjct: 137 EVHTTDEAVKIAEEIGYPIMLKASAGGGGKGIRKVNNVEELVPAFEAAQAEAQAAFGNGA 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+ +     +   ++GD+  +V  +            K             I   + 
Sbjct: 197 MFIERMIFPARHIEVQILGDSQGNVIHLGERDCSLQRNNQKVL----EESPSVAIGHTLR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            E+   A  A Q +        +FL D  S K +++E+N 
Sbjct: 253 NEITAAAVKAAQHVSYENAGTIEFLLDESSGKFYFMEMNT 292


>gi|54294716|ref|YP_127131.1| hypothetical protein lpl1793 [Legionella pneumophila str. Lens]
 gi|53754548|emb|CAH16032.1| hypothetical protein lpl1793 [Legionella pneumophila str. Lens]
          Length = 654

 Score = 79.4 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 75/220 (34%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       E   I +    I A      K  +KQ++    VP+ P    
Sbjct: 77  AIHPGYGFLSENPDFAKACEQAGIVFIGPSIKAMEAMASKQLAKQLLEKTKVPLTPGYHG 136

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
              + +        I  P +IK   GG   G+  +  ++     L  +   +      D 
Sbjct: 137 VEQSEEKLLSEAKKIGFPVLIKAANGGGGKGMRAVHDEKEFHDALAGAKRESMTSFADDT 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           ++IE+ V +   +   +M D   +V  +            K             +   + 
Sbjct: 197 MIIERLVLNPRHVEVQIMADNHGNVVHLFERDCSIQRRHQKII----EEAPAPNLSPVLR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +   A    ++I  RG    +FL D    K +++E+N 
Sbjct: 253 QRLAEAACEVARSINYRGAGTVEFLLDGED-KFYFMEMNT 291


>gi|293397108|ref|ZP_06641382.1| urea carboxylase [Serratia odorifera DSM 4582]
 gi|291420579|gb|EFE93834.1| urea carboxylase [Serratia odorifera DSM 4582]
          Length = 1245

 Score = 79.4 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 28/197 (14%), Positives = 63/197 (31%), Gaps = 12/197 (6%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---ISPPYVIKP 132
            I +             K R++++ +  GVP+ P   +      +      I  P ++K 
Sbjct: 137 GIAFIGPTARQIREFGLKHRARELAALAGVPMTPGTGLLDSVEAAVEAAAHIGYPVMLKS 196

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSS----WNHGDQLLIEQYVD-GIELTCGVMGDASL 187
             GG  +G+       ++             +       +E+ V+    +   + GD   
Sbjct: 197 TAGGGGIGLSRCDDQAALREAYDGVKRMGQQFFRDAGAFVERCVERARHVEVQIFGDGQG 256

Query: 188 DVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
            V  +            K             +P    + + R A    +++  R     +
Sbjct: 257 RVLALGERDCSLQRRNQK----VVEETPAPNLPEATRQALHRAAIALGESVNYRSAGTVE 312

Query: 248 FLFDPLSRKVFWLEINV 264
           F++D    + ++LE+N 
Sbjct: 313 FIYDGERDEFYFLEVNT 329


>gi|163839309|ref|YP_001623714.1| acetyl/propionyl CoA carboxylase, alpha subunit [Renibacterium
           salmoninarum ATCC 33209]
 gi|162952785|gb|ABY22300.1| acetyl/propionyl CoA carboxylase, alpha subunit [Renibacterium
           salmoninarum ATCC 33209]
          Length = 660

 Score = 79.4 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 82/222 (36%), Gaps = 19/222 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      L    I +    + A  +  DK+RSK  V    VPV   I  
Sbjct: 80  AVHPGYGFLSENLAFAQALAAAGITFIGPNLEALNVMGDKIRSKNHVQENQVPVVAGIAE 139

Query: 112 --LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGD 164
             L +   +++   I  P +IKP  GG   G+  +     +P  L     + +S++   D
Sbjct: 140 PGLSDAALIEAAGSIGYPILIKPSAGGGGKGMHSVFDTAELPETLKTARRVAASAFG-DD 198

Query: 165 QLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            L +E+ V     +   ++GD    V  +   +        K           A +    
Sbjct: 199 TLFLERLVATPRHIEVQILGDNFGHVIHLGERECSLQRRHQK----VIEEAPSALLDAAT 254

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLF-DPLSRKVFWLEINV 264
              +   A  A +++   G    +FL  D    + F++E+N 
Sbjct: 255 RARIGEAACNAARSVSYTGAGTVEFLVSDDAPDEFFFMEMNT 296


>gi|162139108|ref|YP_598311.2| carbamoyl phosphate synthase large subunit [Streptococcus pyogenes
           MGAS10270]
          Length = 1058

 Score = 79.4 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 38/292 (13%), Positives = 100/292 (34%), Gaps = 32/292 (10%)

Query: 24  SALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH-----G---NFGEDG 66
            A++ AG++   +         D   S  L    L  +   NV+      G    FG   
Sbjct: 579 KAIQKAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIDLEQPKGVIVQFGGQT 638

Query: 67  LV---QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQ 121
            +   QA+ E   +    + +     + D+   ++ +   G+P             +++ 
Sbjct: 639 AINLAQALSE-AGVTILGTQVEDLDRAEDRDLFEKALKELGIPQPQGQTATNEEEALEAA 697

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
             I  P +++P        + +++  + +   +  +   +    +L++ Y+ G E     
Sbjct: 698 KKIGFPVLVRPSYVLGGRAMEIVENKEDLREYIRTAVKASPEHPILVDSYIFGKECEVDA 757

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241
           + D    +    +   +       +S  +     P ++   I + +          + C 
Sbjct: 758 ISDGKSVLIPGIMEHIERAGV---HSGDSMAVYPPQQLSKQIQETIAEYTKRLAIGLNCI 814

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           G+    F+    + +V+ +E+N +   T     P ++   G    ++   ++
Sbjct: 815 GMMNVQFVI--KNEQVYVIEVNPRASRT----VPFLSKVTGIPMAQIATKLI 860



 Score = 69.4 bits (169), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 50/296 (16%), Positives = 107/296 (36%), Gaps = 34/296 (11%)

Query: 25  ALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNVLHGNFG 63
           AL++ G+KV  ++        D+ +                ++   +PD     L G  G
Sbjct: 36  ALKEEGYKVILVNSNPATIMTDKEIADKVYIEPLTLEFVNRIIRKERPDAILPTLGGQTG 95

Query: 64  EDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFT 117
            +  +      IL+ LEI    + + A   + D+   KQ++     P+  S +V      
Sbjct: 96  LNMAMALSKAGILDDLEIELLGTKLSAIDQAEDRDLFKQLMQELDQPIPESTIVKTVDEA 155

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IE 176
           +     I  P +++P       G  +   ++ +          +   Q LIE+ + G  E
Sbjct: 156 VTFARDIGYPVIVRPAFTLGGTGGGICSSEEELCEITENGLKLSPVTQCLIERSIAGFKE 215

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +   VM D++ +   + V   + +     ++  +        +     + ++  +    +
Sbjct: 216 IEYEVMRDSADNA--LVVCNMENFDPVGIHTGDSIVFAPTQTLSDIENQMLRDASLKIIR 273

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           A+   G        DP S K + +E+N  P ++  S     +   GY   +L   +
Sbjct: 274 ALKIEGGCNVQLALDPYSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAKI 325


>gi|146307058|ref|YP_001187523.1| 3-methylcrotonoyl-CoA carboxylase, alpha subunit [Pseudomonas
           mendocina ymp]
 gi|145575259|gb|ABP84791.1| 3-methylcrotonoyl-CoA carboxylase, alpha subunit [Pseudomonas
           mendocina ymp]
          Length = 644

 Score = 79.4 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 41/221 (18%), Positives = 79/221 (35%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      +E   + +      A      K  +K ++ + GVP+ P    
Sbjct: 81  AIHPGYGFLSENAGFARAIEEAGLIFLGPPASAIDAMGSKSAAKALMEAAGVPLVPGYHG 140

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
               +D    +   I  P ++K   GG   G+ V++++  +   L  +           +
Sbjct: 141 EAQDIDTFRQAAERIGYPVLLKAAAGGGGKGMKVVERESELAEALASAQREAQSSFGDSR 200

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           +L+E+Y+     +   V  D       +            K          PA  +  ++
Sbjct: 201 MLVEKYILKPRHVEIQVFADQHGHCLYLNERDCSIQRRHQK-----VVEEAPAPGLSPEL 255

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +   A  A QAIG  G    +FL D      F++E+N 
Sbjct: 256 RRAMGEAAVKAAQAIGYVGAGTVEFLLDER-GDFFFMEMNT 295


>gi|94543719|gb|ABF33767.1| Carbamoyl-phosphate synthase large chain [Streptococcus pyogenes
           MGAS10270]
          Length = 1073

 Score = 79.4 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 38/292 (13%), Positives = 100/292 (34%), Gaps = 32/292 (10%)

Query: 24  SALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH-----G---NFGEDG 66
            A++ AG++   +         D   S  L    L  +   NV+      G    FG   
Sbjct: 594 KAIQKAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIDLEQPKGVIVQFGGQT 653

Query: 67  LV---QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQ 121
            +   QA+ E   +    + +     + D+   ++ +   G+P             +++ 
Sbjct: 654 AINLAQALSE-AGVTILGTQVEDLDRAEDRDLFEKALKELGIPQPQGQTATNEEEALEAA 712

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
             I  P +++P        + +++  + +   +  +   +    +L++ Y+ G E     
Sbjct: 713 KKIGFPVLVRPSYVLGGRAMEIVENKEDLREYIRTAVKASPEHPILVDSYIFGKECEVDA 772

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241
           + D    +    +   +       +S  +     P ++   I + +          + C 
Sbjct: 773 ISDGKSVLIPGIMEHIERAGV---HSGDSMAVYPPQQLSKQIQETIAEYTKRLAIGLNCI 829

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           G+    F+    + +V+ +E+N +   T     P ++   G    ++   ++
Sbjct: 830 GMMNVQFVI--KNEQVYVIEVNPRASRT----VPFLSKVTGIPMAQIATKLI 875



 Score = 69.4 bits (169), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 50/296 (16%), Positives = 107/296 (36%), Gaps = 34/296 (11%)

Query: 25  ALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNVLHGNFG 63
           AL++ G+KV  ++        D+ +                ++   +PD     L G  G
Sbjct: 51  ALKEEGYKVILVNSNPATIMTDKEIADKVYIEPLTLEFVNRIIRKERPDAILPTLGGQTG 110

Query: 64  EDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFT 117
            +  +      IL+ LEI    + + A   + D+   KQ++     P+  S +V      
Sbjct: 111 LNMAMALSKAGILDDLEIELLGTKLSAIDQAEDRDLFKQLMQELDQPIPESTIVKTVDEA 170

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IE 176
           +     I  P +++P       G  +   ++ +          +   Q LIE+ + G  E
Sbjct: 171 VTFARDIGYPVIVRPAFTLGGTGGGICSSEEELCEITENGLKLSPVTQCLIERSIAGFKE 230

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +   VM D++ +   + V   + +     ++  +        +     + ++  +    +
Sbjct: 231 IEYEVMRDSADNA--LVVCNMENFDPVGIHTGDSIVFAPTQTLSDIENQMLRDASLKIIR 288

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           A+   G        DP S K + +E+N  P ++  S     +   GY   +L   +
Sbjct: 289 ALKIEGGCNVQLALDPYSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAKI 340


>gi|54298654|ref|YP_125023.1| pyruvate carboxylase subunit A [Legionella pneumophila str. Paris]
 gi|53752439|emb|CAH13871.1| hypothetical protein lpp2718 [Legionella pneumophila str. Paris]
          Length = 471

 Score = 79.4 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 35/228 (15%), Positives = 74/228 (32%), Gaps = 22/228 (9%)

Query: 47  AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP 106
             + P   F   +  F ED           I +        A    K+ +++ +   GVP
Sbjct: 75  EAIHPGYGFLSENAEFAED------CNKAGIVFIGPSAPVIATMGSKIAAREAMIKAGVP 128

Query: 107 VCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSS 158
             P    N  T+D        +  P ++K   GG   GI +      I         ++ 
Sbjct: 129 TIPGSKGNLETIDDALHCAETLGYPVMLKATFGGGGRGIRLCHDASQIKQQFARVQSEAE 188

Query: 159 SWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP- 216
                  + +E+Y+ +   +   ++ D    V  +            K        + P 
Sbjct: 189 KSFGDSHIYMEKYIANPRHIEVQILADHHGTVLHLFERDCSIQRRHQKL-----VEIAPS 243

Query: 217 AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            ++     + +   A  A + +G       +F+ D  + + +++E+N 
Sbjct: 244 PQLDEATRQVLLGYAVKAAKEVGYTNAGTVEFILDK-NNQPYFMEMNT 290


>gi|292493532|ref|YP_003528971.1| acetyl-CoA carboxylase, biotin carboxylase [Nitrosococcus
           halophilus Nc4]
 gi|291582127|gb|ADE16584.1| acetyl-CoA carboxylase, biotin carboxylase [Nitrosococcus
           halophilus Nc4]
          Length = 446

 Score = 79.4 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 53/291 (18%), Positives = 102/291 (35%), Gaps = 50/291 (17%)

Query: 13  EVSLSSGKACASALEDAGFKVSQI--DVDRSVGLVLAH-----LKPDLAF---------- 55
           E++L        A  + G +   I  +VDR +  VL       + P  +F          
Sbjct: 12  EIALR----ILRACRELGIRTVAIHSEVDRELKHVLLADETVCIGPAASFQSYLNIPAVI 67

Query: 56  --------NVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCG 104
                     +H  +G   E+      +E     +         L  DK+ + + + S G
Sbjct: 68  SVAEITDAIAIHPGYGFLAENADFAERVEQSGFVFIGPRAETIRLMGDKVSAIKAMKSSG 127

Query: 105 VPVCPSILVNRFTMDSQHL-----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL---- 155
           VP  P         D ++L     I  P +IK   GG   G+ V+  +  +   +     
Sbjct: 128 VPCVPGSEGPLGEDDEENLAIAREIGYPVMIKAAGGGGGRGMRVVHSEAHLLTAISLTRT 187

Query: 156 QSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHV 214
           ++ +    D + +E+Y++    +   V+ DA+     +            K         
Sbjct: 188 EAGAAFSNDMVYMEKYLENPRHVEFQVLADANGQAIHLGERDCSMQRRHQK-----VIEE 242

Query: 215 LPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            PA  I  +  + +  +   A + IG RG    +FL+     + +++E+N 
Sbjct: 243 APAPGITDEQRQRMGEVCAEACRKIGYRGAGTFEFLY--QDGEFYFIEMNT 291


>gi|228997545|ref|ZP_04157158.1| Biotin carboxylase [Bacillus mycoides Rock3-17]
 gi|228762173|gb|EEM11106.1| Biotin carboxylase [Bacillus mycoides Rock3-17]
          Length = 445

 Score = 79.4 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 82/220 (37%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       +   I +        A    K+ S+  +    VPV P I  
Sbjct: 77  AIHPGYGLLSENPSFAVRCKEEGIVFIGPSEEIIAKMGSKIESRLAMQEANVPVVPGITT 136

Query: 114 NRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
           N  T +        I  P ++K   GG  +G+ +++ +Q++         ++ ++    +
Sbjct: 137 NIETAEEAIGIAKQIGYPLMLKASAGGGGIGMQLMETEQTLTKAFESNKTRAQNFFGNGE 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+Y+ D   +   ++ D   +   +   +        K             +  +  
Sbjct: 197 MYLERYIADAHHIEIQLLADTHGNTVYLWERECSVQRRNQK----VIEEAPSPFLDEETR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K + ++A  A +A+G       +FL D      ++LE+N 
Sbjct: 253 KAMGKVAVQAAKALGYTNAGTVEFLVDDKKN-FYFLEMNT 291


>gi|162139406|ref|YP_280093.2| carbamoyl phosphate synthase large subunit [Streptococcus pyogenes
           MGAS6180]
          Length = 1058

 Score = 79.4 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 38/292 (13%), Positives = 100/292 (34%), Gaps = 32/292 (10%)

Query: 24  SALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH-----G---NFGEDG 66
            A++ AG++   +         D   S  L    L  +   NV+      G    FG   
Sbjct: 579 KAIQKAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIDLEQPKGVIVQFGGQT 638

Query: 67  LV---QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQ 121
            +   QA+ E   +    + +     + D+   ++ +   G+P             +++ 
Sbjct: 639 AINLAQALSE-AGVTILGTQVEDLDRAEDRDLFEKALKELGIPQPQGQTATNEEEALEAA 697

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
             I  P +++P        + +++  + +   +  +   +    +L++ Y+ G E     
Sbjct: 698 KKIGFPVLVRPSYVLGGRAMEIVENKEDLREYIRTAVKASPEHPILVDSYIFGKECEVDA 757

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241
           + D    +    +   +       +S  +     P ++   I + +          + C 
Sbjct: 758 ISDGKSVLIPGIMEHIERAGV---HSGDSMAVYPPQQLSKQIQETIAEYTKRLAIGLNCI 814

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           G+    F+    + +V+ +E+N +   T     P ++   G    ++   ++
Sbjct: 815 GMMNVQFVI--KNEQVYVIEVNPRASRT----VPFLSKVTGIPMAQIATKLI 860



 Score = 69.4 bits (169), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 50/296 (16%), Positives = 107/296 (36%), Gaps = 34/296 (11%)

Query: 25  ALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNVLHGNFG 63
           AL++ G+KV  ++        D+ +                ++   +PD     L G  G
Sbjct: 36  ALKEEGYKVILVNSNPATIMTDKEIADKVYIEPLTLEFVNRIIRKERPDAILPTLGGQTG 95

Query: 64  EDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFT 117
            +  +      IL+ LEI    + + A   + D+   KQ++     P+  S +V      
Sbjct: 96  LNMAMALSKAGILDDLEIELLGTKLSAIDQAEDRDLFKQLMQELDQPIPESTIVKTVDEA 155

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IE 176
           +     I  P +++P       G  +   ++ +          +   Q LIE+ + G  E
Sbjct: 156 VTFARDIGYPVIVRPAFTLGGTGGGICSSEEELCEITENGLKLSPVTQCLIERSIAGFKE 215

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +   VM D++ +   + V   + +     ++  +        +     + ++  +    +
Sbjct: 216 IEYEVMRDSADNA--LVVCNMENFDPVGIHTGDSIVFAPTQTLSDIENQMLRDASLKIIR 273

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           A+   G        DP S K + +E+N  P ++  S     +   GY   +L   +
Sbjct: 274 ALKIEGGCNVQLALDPYSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAKI 325


>gi|149003523|ref|ZP_01828397.1| biotin carboxylase subunit [Streptococcus pneumoniae SP14-BS69]
 gi|147758459|gb|EDK65458.1| biotin carboxylase subunit [Streptococcus pneumoniae SP14-BS69]
          Length = 412

 Score = 79.4 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 75/220 (34%), Gaps = 16/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  FG   E+     + E + I +         +  DK+ ++  +   GVPV P    
Sbjct: 34  AIHPGFGFLSENSKFATMCEEVGIKFIGPSGHVMDMMGDKINARAQMIKAGVPVIPGSDG 93

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
            +  +   +     I  P ++K   GG   GI  ++K   +      +SS          
Sbjct: 94  EVHNSEEALIVAEKIGYPVMLKASAGGGGKGIRKVEKPDDLVSAFETASSEAKANYGNGA 153

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+ +     +   ++GD    V  +            K             I   + 
Sbjct: 154 MYIERVIYPARHIEVQILGDEHGHVIHLGERDCSLQRNNQKVL----EESPSIAIGKTLR 209

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            E+   A  A + +G       +FL D  S   +++E+N 
Sbjct: 210 HEIGAAAVRAAEFVGYENAGTIEFLLDEASSNFYFMEMNT 249


>gi|33595902|ref|NP_883545.1| carbamoyl phosphate synthase large subunit [Bordetella
           parapertussis 12822]
 gi|33565981|emb|CAE36532.1| carbamoyl-phosphate synthase large chain [Bordetella parapertussis]
          Length = 1080

 Score = 79.4 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 45/298 (15%), Positives = 107/298 (35%), Gaps = 35/298 (11%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ------ 69
           AL + G++   +         D D S  L    L  +    ++H       +VQ      
Sbjct: 589 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVHKENPVGMIVQYGGQTP 648

Query: 70  ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL-- 123
                 LE   +P   +   +  ++ D+ R +++++  G+   P+           H   
Sbjct: 649 LKLARALEANGVPIIGTSPESIDVAEDRERFQKLLNKLGLRQPPNRTARTEAEALAHASE 708

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVM 182
           I  P V++P        + ++ + Q +   + ++   ++   +L+++++ D  E+    +
Sbjct: 709 IGYPLVVRPSYVLGGRAMEIVHEQQDLERYMREAVKVSNDSPVLLDRFLNDATEVDVDCL 768

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D         +   +       +S  ++  + P  +  ++  E++R   +  +A+   G
Sbjct: 769 ADGQTVFIGGVMEHIEQAGV---HSGDSACSLPPYSLSAEVIAEIKRQTTMMAKALNVSG 825

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           +    F        V+ LE+N +   T     P ++   G      L  +   A   R
Sbjct: 826 LMNVQFAI--QGGDVYVLEVNPRASRT----VPYVSKATGLQ----LAKIAARAMAGR 873



 Score = 59.0 bits (142), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 46/285 (16%), Positives = 99/285 (34%), Gaps = 42/285 (14%)

Query: 18  SGKACASALEDAGF-------------------KVSQIDVD--RSVGLVLAHLKPDLAFN 56
           SG     AL+  G+                    V+ I+    ++V  ++   KPD    
Sbjct: 29  SGAQACKALKAEGYRTILVNSNPATIMTDPETADVTYIEPITWQAVEKIIEREKPDALLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      +L+   +    +   A   + D+ + KQ ++  G+    S +
Sbjct: 89  TMGGQTALNCALDLAHHGVLKKHNVELIGANEHAIEKAEDRQKFKQAMTDIGLESAKSGV 148

Query: 113 VNRFTMDSQ---------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
            +      +              P VI+P       G  +    +   +   +    +  
Sbjct: 149 AHSMDEAWEVQRRIAADIGTAGFPVVIRPSFTLGGSGGGIAYNAEEFEVICRRGLEASPT 208

Query: 164 DQLLIEQYVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IP 220
            +LLIE+ + G  E    V+ D + + +   ++   D           +S  V PA+ + 
Sbjct: 209 KELLIEESLLGWKEFEMEVVRDKADNCIIVCSIENLDPMGVHT----GDSITVAPAQTLT 264

Query: 221 LDIYKEVQRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
              Y+ ++  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 DKEYQIMRNASIAVLREIGVDTGGSNVQFAVNPQNGRMIVIEMNP 309


>gi|329113707|ref|ZP_08242482.1| Acetyl-/propionyl-coenzyme A carboxylase alpha chain [Acetobacter
           pomorum DM001]
 gi|326696970|gb|EGE48636.1| Acetyl-/propionyl-coenzyme A carboxylase alpha chain [Acetobacter
           pomorum DM001]
          Length = 1179

 Score = 79.4 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 37/258 (14%), Positives = 84/258 (32%), Gaps = 36/258 (13%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E       L    I +         +   K  ++++     VP+ P   +
Sbjct: 77  AVHPGYGFLSERAEFAEKLAERGIRFMGPRPEHMRMFGLKHTARELAKQNNVPLLPGSDI 136

Query: 114 NRFTMDSQ---HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQL 166
                ++      I  P ++K   GG  +G+ V   +  +       S          ++
Sbjct: 137 LNSADEAAIEAARIGYPVMLKSTAGGGGIGMQVCHNETELRDCFAAVSRMGGNNFGDARV 196

Query: 167 LIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIY 224
            +E+++     +   + GD   ++  +           L+  +       PA  +     
Sbjct: 197 FLEKFIACARHVEVQIFGDGKGNILTLGE-----RDCSLQRRNQKVIEETPAPGLSDTTR 251

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYA--- 281
           + ++  A     A+        +F++D  S + ++LE+N +              +    
Sbjct: 252 QGLREAARALGSAVAYESAGTVEFIYDTESSEFYFLEVNTR----------LQVEHCVTE 301

Query: 282 ---GYSFRELLLWMVEDA 296
              G    +L+ WMV  A
Sbjct: 302 EVFGI---DLVEWMVRQA 316


>gi|228991443|ref|ZP_04151396.1| Biotin carboxylase [Bacillus pseudomycoides DSM 12442]
 gi|228768288|gb|EEM16898.1| Biotin carboxylase [Bacillus pseudomycoides DSM 12442]
          Length = 445

 Score = 79.4 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 82/220 (37%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       +   I +        A    K+ S+  +    VPV P I  
Sbjct: 77  AIHPGYGLLSENPSFAVRCKEEGIVFIGPSEEIIAKMGSKIESRLAMQEANVPVVPGITT 136

Query: 114 NRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
           N  T +        I  P ++K   GG  +G+ +++ +Q++         ++ ++    +
Sbjct: 137 NIETAEEAIGIAKQIGYPLMLKASAGGGGIGMQLMETEQTLTKAFESNKTRAQNFFGNGE 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+Y+ D   +   ++ D   +   +   +        K             +  +  
Sbjct: 197 MYLERYIADAHHIEIQLLADTHGNTVYLWERECSVQRRNQK----VIEEAPSPFLDEETR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K + ++A  A +A+G       +FL D      ++LE+N 
Sbjct: 253 KAMGKVAVQAAKALGYTNAGTVEFLVDDKKN-FYFLEMNT 291


>gi|71802385|gb|AAX71738.1| carbamoyl-phosphate synthase large chain [Streptococcus pyogenes
           MGAS6180]
          Length = 1073

 Score = 79.4 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 38/292 (13%), Positives = 100/292 (34%), Gaps = 32/292 (10%)

Query: 24  SALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH-----G---NFGEDG 66
            A++ AG++   +         D   S  L    L  +   NV+      G    FG   
Sbjct: 594 KAIQKAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIDLEQPKGVIVQFGGQT 653

Query: 67  LV---QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQ 121
            +   QA+ E   +    + +     + D+   ++ +   G+P             +++ 
Sbjct: 654 AINLAQALSE-AGVTILGTQVEDLDRAEDRDLFEKALKELGIPQPQGQTATNEEEALEAA 712

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
             I  P +++P        + +++  + +   +  +   +    +L++ Y+ G E     
Sbjct: 713 KKIGFPVLVRPSYVLGGRAMEIVENKEDLREYIRTAVKASPEHPILVDSYIFGKECEVDA 772

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241
           + D    +    +   +       +S  +     P ++   I + +          + C 
Sbjct: 773 ISDGKSVLIPGIMEHIERAGV---HSGDSMAVYPPQQLSKQIQETIAEYTKRLAIGLNCI 829

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           G+    F+    + +V+ +E+N +   T     P ++   G    ++   ++
Sbjct: 830 GMMNVQFVI--KNEQVYVIEVNPRASRT----VPFLSKVTGIPMAQIATKLI 875



 Score = 69.4 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 50/296 (16%), Positives = 107/296 (36%), Gaps = 34/296 (11%)

Query: 25  ALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNVLHGNFG 63
           AL++ G+KV  ++        D+ +                ++   +PD     L G  G
Sbjct: 51  ALKEEGYKVILVNSNPATIMTDKEIADKVYIEPLTLEFVNRIIRKERPDAILPTLGGQTG 110

Query: 64  EDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFT 117
            +  +      IL+ LEI    + + A   + D+   KQ++     P+  S +V      
Sbjct: 111 LNMAMALSKAGILDDLEIELLGTKLSAIDQAEDRDLFKQLMQELDQPIPESTIVKTVDEA 170

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IE 176
           +     I  P +++P       G  +   ++ +          +   Q LIE+ + G  E
Sbjct: 171 VTFARDIGYPVIVRPAFTLGGTGGGICSSEEELCEITENGLKLSPVTQCLIERSIAGFKE 230

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +   VM D++ +   + V   + +     ++  +        +     + ++  +    +
Sbjct: 231 IEYEVMRDSADNA--LVVCNMENFDPVGIHTGDSIVFAPTQTLSDIENQMLRDASLKIIR 288

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           A+   G        DP S K + +E+N  P ++  S     +   GY   +L   +
Sbjct: 289 ALKIEGGCNVQLALDPYSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAKI 340


>gi|170758452|ref|YP_001788628.1| pyruvate carboxylase [Clostridium botulinum A3 str. Loch Maree]
 gi|169405441|gb|ACA53852.1| pyruvate carboxylase [Clostridium botulinum A3 str. Loch Maree]
          Length = 1144

 Score = 79.4 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 78/222 (35%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+           I +            DK++SK V    GVP  P +  
Sbjct: 80  AIHPGYGFLAENSEFARKCREAGIEFIGPTAEMMEKLGDKIKSKIVAEKAGVPTIPGVQK 139

Query: 114 ----NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP-----LDLLQSSSWNHGD 164
                +  ++       P ++K   GG   G+ +++ ++ +             ++   D
Sbjct: 140 PIKSEKEALEFARYCGYPIMLKAAAGGGGRGMRIVRTEEELISSFKSAKNEAKKAFGIDD 199

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + IE+Y++    +   ++GD   ++  +            K          PA  +P  
Sbjct: 200 -IFIEKYLENPKHIEVQILGDKHGNIVHLYERDCSIQRRHQK-----VIEFTPAFALPKK 253

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +E+   A    + +G R     +FL D      +++E+N 
Sbjct: 254 KREEICNDALKIAKTVGYRSAGTLEFLVDTTGNH-YFIEMNP 294


>gi|162139185|ref|YP_602227.2| carbamoyl phosphate synthase large subunit [Streptococcus pyogenes
           MGAS10750]
          Length = 1058

 Score = 79.4 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 42/293 (14%), Positives = 102/293 (34%), Gaps = 34/293 (11%)

Query: 24  SALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH-----G---NFGEDG 66
            A++ AG++   +         D   S  L    L  +   NV+      G    FG   
Sbjct: 579 KAIQKAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIDLEQPKGVIVQFGGQT 638

Query: 67  LV---QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQ 121
            +   QA+ E   +    + +     + D+   ++ +   G+P             +++ 
Sbjct: 639 AINLAQALSE-AGVTILGTQVEDLDRAEDRDLFEKALKELGIPQPQGQTATNEEEALEAA 697

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
             I  P +++P        + +++  + +   +  +   +    +L++ Y+ G E     
Sbjct: 698 KKIGFPVLVRPSYVLGGRAMEIVENKEDLIEYIRTAVKASPEHPILVDSYIFGKECEVDA 757

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGC 240
           + D       I +P    +       S +S  V P  ++   I + +          + C
Sbjct: 758 ISDGK----SILIPGIMEHIERAGVHSGDSMAVYPPQQLSKQIQETIAEYTKRLAIGLNC 813

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            G+    F+    + +V+ +E+N +   T     P ++   G    ++   ++
Sbjct: 814 IGMMNVQFVI--KNEQVYVIEVNPRASRT----VPFLSKVTGIPMAQIATKLI 860



 Score = 69.4 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 50/296 (16%), Positives = 107/296 (36%), Gaps = 34/296 (11%)

Query: 25  ALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNVLHGNFG 63
           AL++ G+KV  ++        D+ +                ++   +PD     L G  G
Sbjct: 36  ALKEEGYKVILVNSNPATIMTDKEIADKVYIEPLTLEFVNRIIRKERPDAILPTLGGQTG 95

Query: 64  EDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFT 117
            +  +      IL+ LEI    + + A   + D+   KQ++     P+  S +V      
Sbjct: 96  LNMAMALSKAGILDDLEIELLGTKLSAIDQAEDRDLFKQLMQELDQPIPESTIVKTVDEA 155

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IE 176
           +     I  P +++P       G  +   ++ +          +   Q LIE+ + G  E
Sbjct: 156 VTFARDIGYPVIVRPAFTLGGTGGGICSSEEELCEITENGLKLSPVTQCLIERSIAGFKE 215

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +   VM D++ +   + V   + +     ++  +        +     + ++  +    +
Sbjct: 216 IEYEVMRDSADNA--LVVCNMENFDPVGIHTGDSIVFAPTQTLSDIENQMLRDASLKIIR 273

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           A+   G        DP S K + +E+N  P ++  S     +   GY   +L   +
Sbjct: 274 ALKIEGGCNVQLALDPYSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAKI 325


>gi|160933860|ref|ZP_02081248.1| hypothetical protein CLOLEP_02722 [Clostridium leptum DSM 753]
 gi|156867737|gb|EDO61109.1| hypothetical protein CLOLEP_02722 [Clostridium leptum DSM 753]
          Length = 426

 Score = 79.4 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 85/220 (38%), Gaps = 18/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+    ++ E   I +        +   DK  +++ + + GVPV P    
Sbjct: 54  AIHPGYGLLSENAKFVSLCEKCNIAFIGPTSQMISQMGDKDMARKTMRNAGVPVTPGCDI 113

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGDQ 165
           I   +        I  P +IK   GG   GI ++    +             S++     
Sbjct: 114 ITDIKEAAAVAEKIGYPVLIKAKAGGGGRGIRLVSSPDAFENAFYSASSEAQSAFG-DGA 172

Query: 166 LLIEQYVDGI-ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             +E+Y++ +  +   ++ D   +V  +   +    S + K   L      PA I  D  
Sbjct: 173 CYMEKYLNPVKHIEMQILCDQYGNVVCLGERE---CSVQRKNQKLIEESPSPA-ITQDTR 228

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + + ++A  A + +G  G    +FL+D      +++E+N 
Sbjct: 229 QRMIQVAAKAAKTVGYVGAGTIEFLYDQSGN-FYFMEMNT 267


>gi|94547637|gb|ABF37683.1| Carbamoyl-phosphate synthase large chain [Streptococcus pyogenes
           MGAS10750]
          Length = 1073

 Score = 79.4 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 42/293 (14%), Positives = 102/293 (34%), Gaps = 34/293 (11%)

Query: 24  SALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH-----G---NFGEDG 66
            A++ AG++   +         D   S  L    L  +   NV+      G    FG   
Sbjct: 594 KAIQKAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIDLEQPKGVIVQFGGQT 653

Query: 67  LV---QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQ 121
            +   QA+ E   +    + +     + D+   ++ +   G+P             +++ 
Sbjct: 654 AINLAQALSE-AGVTILGTQVEDLDRAEDRDLFEKALKELGIPQPQGQTATNEEEALEAA 712

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
             I  P +++P        + +++  + +   +  +   +    +L++ Y+ G E     
Sbjct: 713 KKIGFPVLVRPSYVLGGRAMEIVENKEDLIEYIRTAVKASPEHPILVDSYIFGKECEVDA 772

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGC 240
           + D       I +P    +       S +S  V P  ++   I + +          + C
Sbjct: 773 ISDGK----SILIPGIMEHIERAGVHSGDSMAVYPPQQLSKQIQETIAEYTKRLAIGLNC 828

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            G+    F+    + +V+ +E+N +   T     P ++   G    ++   ++
Sbjct: 829 IGMMNVQFVI--KNEQVYVIEVNPRASRT----VPFLSKVTGIPMAQIATKLI 875



 Score = 69.4 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 50/296 (16%), Positives = 107/296 (36%), Gaps = 34/296 (11%)

Query: 25  ALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNVLHGNFG 63
           AL++ G+KV  ++        D+ +                ++   +PD     L G  G
Sbjct: 51  ALKEEGYKVILVNSNPATIMTDKEIADKVYIEPLTLEFVNRIIRKERPDAILPTLGGQTG 110

Query: 64  EDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFT 117
            +  +      IL+ LEI    + + A   + D+   KQ++     P+  S +V      
Sbjct: 111 LNMAMALSKAGILDDLEIELLGTKLSAIDQAEDRDLFKQLMQELDQPIPESTIVKTVDEA 170

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IE 176
           +     I  P +++P       G  +   ++ +          +   Q LIE+ + G  E
Sbjct: 171 VTFARDIGYPVIVRPAFTLGGTGGGICSSEEELCEITENGLKLSPVTQCLIERSIAGFKE 230

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +   VM D++ +   + V   + +     ++  +        +     + ++  +    +
Sbjct: 231 IEYEVMRDSADNA--LVVCNMENFDPVGIHTGDSIVFAPTQTLSDIENQMLRDASLKIIR 288

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           A+   G        DP S K + +E+N  P ++  S     +   GY   +L   +
Sbjct: 289 ALKIEGGCNVQLALDPYSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAKI 340


>gi|94502108|ref|ZP_01308610.1| acetyl-CoA carboxylase [Oceanobacter sp. RED65]
 gi|94425745|gb|EAT10751.1| acetyl-CoA carboxylase [Oceanobacter sp. RED65]
          Length = 473

 Score = 79.4 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 81/221 (36%), Gaps = 20/221 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     I E   + +            DK +++  +   GVPV P    
Sbjct: 78  AIHPGYGFLSENAEFARICEQKGVRFIGPKSDVIQGMGDKTQARASMRKAGVPVTPGSEG 137

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD----LLQSSSWNHGDQ 165
            +      ++  + I  P ++K   GG   GI     +Q +       + +++       
Sbjct: 138 NLATVEEAIELANEIGYPVMVKATSGGGGRGIRRCDSEQELKQQFPRVISEATKAFGSAD 197

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDI 223
           + IE+ + D   +   ++ D+  +V  +            K        + P  ++  + 
Sbjct: 198 VFIEKCIVDPKHIEVQILADSHGNVIHLYERDCSIQRRNQKL-----IEIAPSPQLTDEQ 252

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +  LA  A +A+G       +FLF      V+++E+N 
Sbjct: 253 REHIGELAVKAAKAVGYENAGTVEFLFT--GDDVYFMEMNT 291


>gi|307610530|emb|CBX00116.1| hypothetical protein LPW_18611 [Legionella pneumophila 130b]
          Length = 654

 Score = 79.4 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 75/220 (34%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       E   I +    I A      K  +KQ++    VP+ P    
Sbjct: 77  AIHPGYGFLSENPDFAKACEQAGIVFIGPSIKAMEAMASKQLAKQLLEKTKVPLTPGYHG 136

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
              + +        I  P +IK   GG   G+  +  ++     L  +   +      D 
Sbjct: 137 VEQSEEKLLSEAKKIGFPVLIKAANGGGGKGMRAVHDEKEFHDALAGAKRESMASFADDT 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           ++IE+ V +   +   +M D   +V  +            K             +   + 
Sbjct: 197 MIIERLVLNPRHVEVQIMADNHGNVVHLFERDCSIQRRHQKII----EEAPAPNLSPVLR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +   A    ++I  RG    +FL D    K +++E+N 
Sbjct: 253 QRLAEAACEVARSINYRGAGTVEFLVDGED-KFYFMEMNT 291


>gi|302391151|ref|YP_003826971.1| hypothetical protein Acear_0359 [Acetohalobium arabaticum DSM 5501]
 gi|302203228|gb|ADL11906.1| protein of unknown function DUF201 [Acetohalobium arabaticum DSM
           5501]
          Length = 390

 Score = 79.4 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 55/292 (18%), Positives = 101/292 (34%), Gaps = 55/292 (18%)

Query: 27  EDAGFKVSQIDVDRSVGLVLAHLK-------------------PDLAFNVLHGNFGEDGL 67
           + AG+KV  ID  R V       +                    DL           +  
Sbjct: 21  QKAGYKVLLIDKRRDVPAFNLADETIICDIMKEKEKFKESLDGVDLILPTTEN----NAA 76

Query: 68  VQAILEL---LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI 124
           +Q +  +   ++IP       A  ++  K +SK++ S   +P            D     
Sbjct: 77  LQTLKSMDSKIDIPIVF-DWAAYQITNSKEKSKKLFSEYDIPQA----------DLWPKA 125

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG- 183
             P +IKP     S  +   +  Q +   L    +      L+IE+Y+ G   +  V+G 
Sbjct: 126 DFPLIIKPSSASGSQEVHRAENKQELDEVLTNLKAAESD--LIIEEYLPGPSYSIEVIGY 183

Query: 184 -DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCR 241
            D  L +       + +  +++ Y           + I  ++ + +  L+    + IG  
Sbjct: 184 QDQILPLV------TTYLDFDVDYDCRQVISTDNLEFIDTELRERLNELSSKIAKKIGLN 237

Query: 242 GISRSDFLFDPLSRKVFWLEINV-QPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           GI   D         +  LEI+   P  TP+++F       G +  ELL+ +
Sbjct: 238 GI--MDLEVIRGENDIKVLEIDARFPSQTPITVF---W-ATGLNMVELLVKL 283


>gi|198452396|ref|XP_001358754.2| GA15253 [Drosophila pseudoobscura pseudoobscura]
 gi|198131915|gb|EAL27897.2| GA15253 [Drosophila pseudoobscura pseudoobscura]
          Length = 702

 Score = 79.4 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 34/199 (17%), Positives = 74/199 (37%), Gaps = 15/199 (7%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD----SQHLISPPYVIK 131
            + +      A      K  SK ++++ GVP+         + +       +I  P +IK
Sbjct: 127 GVIFMGPPSSAIRDMGIKSTSKAIMAAAGVPIINGYHGEDQSDECLQSEAKIIGFPLMIK 186

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQLLIEQYVD-GIELTCGVMGDAS 186
            ++GG   G+ + ++ +     L  + + +        +L+E+YV     +   V  D  
Sbjct: 187 AVRGGGGKGMRIAERPEDFLTALNSARNESQKSFGDSSVLLERYVRSPRHVEVQVFADQY 246

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISR 245
            D   +           ++          PA  +  ++ +E+   A  A +A+G  G   
Sbjct: 247 GDAVYLWE-----RDCSVQRRHQKIIEEAPAPGLSEELRRELGEAAVRAAKAVGYVGAGT 301

Query: 246 SDFLFDPLSRKVFWLEINV 264
            +F+ D       ++E+N 
Sbjct: 302 VEFILDKEDLSFHFMEMNT 320


>gi|170755083|ref|YP_001782935.1| pyruvate carboxylase [Clostridium botulinum B1 str. Okra]
 gi|169120295|gb|ACA44131.1| pyruvate carboxylase [Clostridium botulinum B1 str. Okra]
          Length = 1144

 Score = 79.4 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 78/222 (35%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+           I +            DK++SK V    GVP  P +  
Sbjct: 80  AIHPGYGFLAENSEFARKCREAGIEFIGPTAEMMEKLGDKIKSKIVAEKAGVPTIPGVQK 139

Query: 114 ----NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP-----LDLLQSSSWNHGD 164
                +  ++       P ++K   GG   G+ +++ ++ +             ++   D
Sbjct: 140 PIKSEKEALEFARYCGYPIMLKAAAGGGGRGMRIVRTEEELISSFKSAKNEAKKAFGIDD 199

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + IE+Y++    +   ++GD   ++  +            K          PA  +P  
Sbjct: 200 -IFIEKYLENPKHIEVQILGDKHGNIVHLYERDCSIQRRHQK-----VIEFTPAFALPKK 253

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +E+   A    + +G R     +FL D      +++E+N 
Sbjct: 254 KREEICNDALKIAKTVGYRSAGTLEFLVDTTGNH-YFIEMNP 294


>gi|237654140|ref|YP_002890454.1| acetyl-CoA carboxylase, biotin carboxylase [Thauera sp. MZ1T]
 gi|237625387|gb|ACR02077.1| acetyl-CoA carboxylase, biotin carboxylase [Thauera sp. MZ1T]
          Length = 662

 Score = 79.4 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 79/220 (35%), Gaps = 16/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+      LE   I +      + A   DK+ SK++  + GV   P    
Sbjct: 77  AVHPGYGFLSENAEFSRRLEEEGIKFIGPKHYSVAKMGDKIESKKLAIAAGVNTIPGYND 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
            I      ++    I  P +IK   GG   G+ V   D+           ++ +    D+
Sbjct: 137 AISGPDEAVEIAKKIGYPVMIKASAGGGGKGLRVAFNDKEAHEGFASCVNEARNAFGDDR 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+YV +   +   V+GD+  +   +            K             +   + 
Sbjct: 197 VFIEKYVLEPRHIEIQVLGDSHGNYVYLNERDCSIQRRHQK----VIEEAPSPFVDPAMR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K +   A    +A+        +F+    +++ ++LE+N 
Sbjct: 253 KAMGEQAVALARAVNYESAGTVEFVVSGATKEFYFLEMNT 292


>gi|153941124|ref|YP_001392657.1| pyruvate carboxylase [Clostridium botulinum F str. Langeland]
 gi|152937020|gb|ABS42518.1| pyruvate carboxylase [Clostridium botulinum F str. Langeland]
 gi|295320642|gb|ADG01020.1| pyruvate carboxylase [Clostridium botulinum F str. 230613]
          Length = 1144

 Score = 79.4 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 78/222 (35%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+           I +            DK++SK V    GVP  P +  
Sbjct: 80  AIHPGYGFLAENSEFARKCREAGIEFIGPTAEMMEKLGDKIKSKIVAEKAGVPTIPGVQK 139

Query: 114 ----NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP-----LDLLQSSSWNHGD 164
                +  ++       P ++K   GG   G+ +++ ++ +             ++   D
Sbjct: 140 PIKSEKEALEFARYCGYPIMLKAAAGGGGRGMRIVRTEEELISSFKSAKNEAKKAFGIDD 199

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + IE+Y++    +   ++GD   ++  +            K          PA  +P  
Sbjct: 200 -IFIEKYLENPKHIEVQILGDKHGNIVHLYERDCSIQRRHQK-----VIEFTPAFALPKK 253

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +E+   A    + +G R     +FL D      +++E+N 
Sbjct: 254 KREEICNDALKIAKTVGYRSAGTLEFLVDTTGNH-YFIEMNP 294


>gi|91762148|ref|ZP_01264113.1| biotin carboxylase [Candidatus Pelagibacter ubique HTCC1002]
 gi|91717950|gb|EAS84600.1| biotin carboxylase [Candidatus Pelagibacter ubique HTCC1002]
          Length = 445

 Score = 79.4 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 81/221 (36%), Gaps = 21/221 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---- 109
            +H  +G   E+     +LE   I +  +      +  DK+++K++    G+PV      
Sbjct: 77  AVHPGYGFLSENANFAKVLEENNIKFIGASSKLIEMMGDKIQAKKIAKEHGLPVIEGSEG 136

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSWNHGDQ 165
            I   +   +    I  P +IK   GG   G+ +++K++           ++  +   D+
Sbjct: 137 GITDIKAAKELCKKIGFPVLIKASAGGGGKGMKIVRKEEEFETLFSTAKSEAQKYFGNDE 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           + IE++  D   +   V+   +                 ++          P+  +   I
Sbjct: 197 IYIEKFFQDPRHIEVQVLSGKN------RTVHLHERDCSVQRRHQKLIEETPSPVLTDQI 250

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            K++          IG  G    +F++     K ++LE+N 
Sbjct: 251 RKDLFERTVNMVSKIGYEGAGTVEFIY--EDGKFYFLEMNT 289


>gi|229075704|ref|ZP_04208686.1| Pyruvate carboxylase [Bacillus cereus Rock4-18]
 gi|228707480|gb|EEL59671.1| Pyruvate carboxylase [Bacillus cereus Rock4-18]
          Length = 1148

 Score = 79.4 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 32/243 (13%), Positives = 83/243 (34%), Gaps = 21/243 (8%)

Query: 35  QIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSM 91
            ID    +  ++   K +   + +H  +G   E+       E   I +         +  
Sbjct: 62  PIDAYLDIEGIIEIAKSNHV-DAIHPGYGFLSENIQFAKRCEEEGIIFIGPKSEHLDMFG 120

Query: 92  DKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147
           DK++++       +PV P     I       +       P +IK   GG   G+ +++  
Sbjct: 121 DKVKARTQAQLAQIPVIPGSDGPIDSIEEVEEFAEKYDYPIIIKASLGGGGRGMRIVRAS 180

Query: 148 QSIPL----DLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSY 202
           + +         ++ +    D++ +E++V+    +   ++ D   +V             
Sbjct: 181 EELRESYNRAKSEAKAAFGNDEVYVEKFVEKPKHIEVQILADEEGNVV-----HLFERDC 235

Query: 203 ELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
            ++        + P   +  D+ + +   A    + +        +FL      + +++E
Sbjct: 236 SVQRRHQKVVEIAPSVSLSDDLRQRICEAAVKLTKNVNYLNAGTVEFLV--KGDEFYFIE 293

Query: 262 INV 264
           +N 
Sbjct: 294 VNP 296


>gi|229098417|ref|ZP_04229362.1| Pyruvate carboxylase [Bacillus cereus Rock3-29]
 gi|229117443|ref|ZP_04246819.1| Pyruvate carboxylase [Bacillus cereus Rock1-3]
 gi|228666053|gb|EEL21519.1| Pyruvate carboxylase [Bacillus cereus Rock1-3]
 gi|228685034|gb|EEL38967.1| Pyruvate carboxylase [Bacillus cereus Rock3-29]
          Length = 1148

 Score = 79.4 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 32/243 (13%), Positives = 83/243 (34%), Gaps = 21/243 (8%)

Query: 35  QIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSM 91
            ID    +  ++   K +   + +H  +G   E+       E   I +         +  
Sbjct: 62  PIDAYLDIEGIIEIAKSNHV-DAIHPGYGFLSENIQFAKRCEEEGIIFIGPKSEHLDMFG 120

Query: 92  DKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147
           DK++++       +PV P     I       +       P +IK   GG   G+ +++  
Sbjct: 121 DKVKARTQAQLAQIPVIPGSDGPIDSIEEVEEFAEKYDYPIIIKASLGGGGRGMRIVRAS 180

Query: 148 QSIPL----DLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSY 202
           + +         ++ +    D++ +E++V+    +   ++ D   +V             
Sbjct: 181 EELRESYNRAKSEAKAAFGNDEVYVEKFVEKPKHIEVQILADEEGNVV-----HLFERDC 235

Query: 203 ELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
            ++        + P   +  D+ + +   A    + +        +FL      + +++E
Sbjct: 236 SVQRRHQKVVEIAPSVSLSDDLRQRICEAAVKLTKNVNYLNAGTVEFLV--KGDEFYFIE 293

Query: 262 INV 264
           +N 
Sbjct: 294 VNP 296


>gi|149202217|ref|ZP_01879190.1| propionyl-CoA carboxylase, alpha subunit [Roseovarius sp. TM1035]
 gi|149144315|gb|EDM32346.1| propionyl-CoA carboxylase, alpha subunit [Roseovarius sp. TM1035]
          Length = 666

 Score = 79.4 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 76/221 (34%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      LE   + +    + A     DK+ SK++    GV   P  + 
Sbjct: 77  AVHPGYGFLSENPKFAQALEAAGVAFVGPPVKAIEAMGDKITSKKIAQEAGVSTVPGYMG 136

Query: 114 NRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGD 164
                +      + I  P +IK   GG   G+ +   D+             +SS+   D
Sbjct: 137 LIADAEEAVTISNQIGYPVMIKASAGGGGKGMRIAWNDEEAREGFQSSKNEAASSFG-DD 195

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           ++ IE++V     +   V+ D   +   +   +        K             +    
Sbjct: 196 RIFIEKFVTQPRHIEIQVLCDTHGNGIYLGERECSIQRRNQK----VIEEAPSPFLDEAT 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +   A    QA+G       +F+ D   R  ++LE+N 
Sbjct: 252 RRAMGEQAVALAQAVGYASAGTVEFIVDGQ-RNFYFLEMNT 291


>gi|300768944|ref|ZP_07078835.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus
           plantarum subsp. plantarum ATCC 14917]
 gi|300493465|gb|EFK28642.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus
           plantarum subsp. plantarum ATCC 14917]
          Length = 1020

 Score = 79.4 bits (195), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 34/225 (15%), Positives = 80/225 (35%), Gaps = 14/225 (6%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--FTMDSQHLISPPYV 129
           L  L +    + + A+ L+ D+      +    +       V        + H I  P +
Sbjct: 644 LTKLGVTVLGTSVSATDLTEDRQSFADCLRLLKIAQAAGTTVTELSGARQAAHAIGYPLL 703

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           ++P        + ++  D  +   +  + +  HG  +L++QY+ G E    V+ D +   
Sbjct: 704 VRPSFVLGGRAMAIVHNDHELTPVIKSAVAAGHGAPILMDQYLAGTECEVDVLSDGTSCF 763

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               +   +           +S  V P + +   +  ++  +A    Q + C G+    F
Sbjct: 764 IPGIMEHIEGAGVHS----GDSITVYPPQHLSPAVQDKIVTIATKLAQHLHCVGMMNIQF 819

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +       V+ +++N +   T     P M+        +L   ++
Sbjct: 820 VVTDD---VYVIDVNPRASRT----VPYMSKVTHLPLAQLATRLI 857



 Score = 72.1 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 44/231 (19%), Positives = 87/231 (37%), Gaps = 9/231 (3%)

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRS 96
           SV  +L    PD     L G  G +  +      +L  L+I    + +     + D+   
Sbjct: 73  SVTKILRATHPDALLPTLGGQTGLNLAMALDQAGVLNELKIQLLGTSLATINQAEDRAAF 132

Query: 97  KQVVSSCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154
           K ++     P+  S  V+  T  +     I  P +++P       G  +      +   L
Sbjct: 133 KTLMKRLHQPIPASTTVHHVTSALSFAEKIGYPVIVRPAFTLGGSGGGIANNAAELTQTL 192

Query: 155 LQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTH 213
            +  + +   + LIEQ + G  E+   VM D     T+I V   + +     ++  +  +
Sbjct: 193 QRGLTMSPVTECLIEQSIAGFKEIEFEVMRDNQG--TKIIVCSMENFDPVGIHTGDSIVY 250

Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
                +    Y++++       +A+  RG        DP SR+ + +E+N 
Sbjct: 251 APVQTLTDTEYQQLRTATLTIVEALDIRGGCNVQLAQDPNSRQYYVIEVNP 301


>gi|162139084|ref|YP_596431.2| carbamoyl phosphate synthase large subunit [Streptococcus pyogenes
           MGAS9429]
 gi|162139133|ref|YP_600307.2| carbamoyl phosphate synthase large subunit [Streptococcus pyogenes
           MGAS2096]
          Length = 1058

 Score = 79.4 bits (195), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 38/292 (13%), Positives = 100/292 (34%), Gaps = 32/292 (10%)

Query: 24  SALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH-----G---NFGEDG 66
            A++ AG++   +         D   S  L    L  +   NV+      G    FG   
Sbjct: 579 KAIQKAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIDLEQPKGVIVQFGGQT 638

Query: 67  LV---QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQ 121
            +   QA+ E   +    + +     + D+   ++ +   G+P             +++ 
Sbjct: 639 AINLAQALSE-AGVTILGTQVEDLDRAEDRDLFEKALKELGIPQPQGQTATNEEEALEAA 697

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
             I  P +++P        + +++  + +   +  +   +    +L++ Y+ G E     
Sbjct: 698 KKIGFPVLVRPSYVLGGRAMEIVENKEDLREYIRTAVKASPEHPILVDSYIFGKECEVDA 757

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241
           + D    +    +   +       +S  +     P ++   I + +          + C 
Sbjct: 758 ISDGKSVLIPGIMEHIERAGV---HSGDSMAVYPPQQLSKQIQETIAEYTKRLAIGLNCI 814

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           G+    F+    + +V+ +E+N +   T     P ++   G    ++   ++
Sbjct: 815 GMMNVQFVI--KNEQVYVIEVNPRASRT----VPFLSKVTGIPMAQIATKLI 860



 Score = 69.4 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 50/296 (16%), Positives = 107/296 (36%), Gaps = 34/296 (11%)

Query: 25  ALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNVLHGNFG 63
           AL++ G+KV  ++        D+ +                ++   +PD     L G  G
Sbjct: 36  ALKEEGYKVILVNSNPATIMTDKEIADKVYIEPLTLEFVNRIIRKERPDAILPTLGGQTG 95

Query: 64  EDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFT 117
            +  +      IL+ LEI    + + A   + D+   KQ++     P+  S +V      
Sbjct: 96  LNMAMALSKAGILDDLEIELLGTKLSAIDQAEDRDLFKQLMQELDQPIPESTIVKTVDEA 155

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IE 176
           +     I  P +++P       G  +   ++ +          +   Q LIE+ + G  E
Sbjct: 156 VTFARDIGYPVIVRPAFTLGGTGGGICSSEEELCEITENGLKLSPVTQCLIERSIAGFKE 215

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +   VM D++ +   + V   + +     ++  +        +     + ++  +    +
Sbjct: 216 IEYEVMRDSADNA--LVVCNMENFDPVGIHTGDSIVFAPTQTLSDIENQMLRDASLKIIR 273

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           A+   G        DP S K + +E+N  P ++  S     +   GY   +L   +
Sbjct: 274 ALKIEGGCNVQLALDPYSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAKI 325


>gi|154486668|ref|ZP_02028075.1| hypothetical protein BIFADO_00488 [Bifidobacterium adolescentis
           L2-32]
 gi|154084531|gb|EDN83576.1| hypothetical protein BIFADO_00488 [Bifidobacterium adolescentis
           L2-32]
          Length = 661

 Score = 79.4 bits (195), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 38/204 (18%), Positives = 81/204 (39%), Gaps = 15/204 (7%)

Query: 69  QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP----SILVNRFTMDSQHLI 124
           Q +L+     +      A     DK+ +++V +   VP  P    SI   R  +D  H  
Sbjct: 123 QKVLD-AGATWVGPNPKALVDLGDKITARRVATFAKVPPVPGISQSISDMRLLLDFAHTH 181

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG--DQLLIEQYVD-GIELTCGV 181
             P ++K   GG   GI ++  D  +    +   +   G  D+  +E+++D G  +    
Sbjct: 182 GYPLMLKRTDGGGGRGITLVHNDDELRGFYMNHDALQGGDLDEYFVERFIDKGRHVETQC 241

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGC 240
             D+  + T  +          ++  +       PA  +   + ++++  +    +A+  
Sbjct: 242 GRDSHGNFTVYST-----RDCSVQRRNQKLVEEAPAPFLSDGVLEQLETYSRRLFEAVDY 296

Query: 241 RGISRSDFLFDPLSRKVFWLEINV 264
            G+   +F+      KV++LE+N 
Sbjct: 297 IGLGTCEFMVTEQ-GKVYFLEVNP 319


>gi|94541838|gb|ABF31887.1| carbamoyl-phosphate synthase large chain [Streptococcus pyogenes
           MGAS9429]
 gi|94545716|gb|ABF35763.1| Carbamoyl-phosphate synthase large chain [Streptococcus pyogenes
           MGAS2096]
          Length = 1073

 Score = 79.4 bits (195), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 38/292 (13%), Positives = 100/292 (34%), Gaps = 32/292 (10%)

Query: 24  SALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH-----G---NFGEDG 66
            A++ AG++   +         D   S  L    L  +   NV+      G    FG   
Sbjct: 594 KAIQKAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIDLEQPKGVIVQFGGQT 653

Query: 67  LV---QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQ 121
            +   QA+ E   +    + +     + D+   ++ +   G+P             +++ 
Sbjct: 654 AINLAQALSE-AGVTILGTQVEDLDRAEDRDLFEKALKELGIPQPQGQTATNEEEALEAA 712

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
             I  P +++P        + +++  + +   +  +   +    +L++ Y+ G E     
Sbjct: 713 KKIGFPVLVRPSYVLGGRAMEIVENKEDLREYIRTAVKASPEHPILVDSYIFGKECEVDA 772

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241
           + D    +    +   +       +S  +     P ++   I + +          + C 
Sbjct: 773 ISDGKSVLIPGIMEHIERAGV---HSGDSMAVYPPQQLSKQIQETIAEYTKRLAIGLNCI 829

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           G+    F+    + +V+ +E+N +   T     P ++   G    ++   ++
Sbjct: 830 GMMNVQFVI--KNEQVYVIEVNPRASRT----VPFLSKVTGIPMAQIATKLI 875



 Score = 69.4 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 50/296 (16%), Positives = 107/296 (36%), Gaps = 34/296 (11%)

Query: 25  ALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNVLHGNFG 63
           AL++ G+KV  ++        D+ +                ++   +PD     L G  G
Sbjct: 51  ALKEEGYKVILVNSNPATIMTDKEIADKVYIEPLTLEFVNRIIRKERPDAILPTLGGQTG 110

Query: 64  EDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFT 117
            +  +      IL+ LEI    + + A   + D+   KQ++     P+  S +V      
Sbjct: 111 LNMAMALSKAGILDDLEIELLGTKLSAIDQAEDRDLFKQLMQELDQPIPESTIVKTVDEA 170

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IE 176
           +     I  P +++P       G  +   ++ +          +   Q LIE+ + G  E
Sbjct: 171 VTFARDIGYPVIVRPAFTLGGTGGGICSSEEELCEITENGLKLSPVTQCLIERSIAGFKE 230

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +   VM D++ +   + V   + +     ++  +        +     + ++  +    +
Sbjct: 231 IEYEVMRDSADNA--LVVCNMENFDPVGIHTGDSIVFAPTQTLSDIENQMLRDASLKIIR 288

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           A+   G        DP S K + +E+N  P ++  S     +   GY   +L   +
Sbjct: 289 ALKIEGGCNVQLALDPYSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAKI 340


>gi|254555595|ref|YP_003062012.1| carbamoyl phosphate synthase large subunit [Lactobacillus plantarum
           JDM1]
 gi|6006568|emb|CAB56843.1| carbamoyl-phosphate synthase large subunit [Lactobacillus plantarum
           subsp. plantarum]
 gi|254044522|gb|ACT61315.1| carbamoyl phosphate synthase large subunit [Lactobacillus plantarum
           JDM1]
          Length = 1020

 Score = 79.4 bits (195), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 34/225 (15%), Positives = 80/225 (35%), Gaps = 14/225 (6%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--FTMDSQHLISPPYV 129
           L  L +    + + A+ L+ D+      +    +       V        + H I  P +
Sbjct: 644 LTKLGVTVLGTSVSATDLTEDRQSFADCLRLLKIAQAAGTTVTELSGARQAAHAIGYPLL 703

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           ++P        + ++  D  +   +  + +  HG  +L++QY+ G E    V+ D +   
Sbjct: 704 VRPSFVLGGRAMAIVHNDHELTPVIKSAVAAGHGAPILMDQYLAGTECEVDVLSDGTSCF 763

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               +   +           +S  V P + +   +  ++  +A    Q + C G+    F
Sbjct: 764 IPGIMEHIEGAGVHS----GDSITVYPPQHLSPAVQDKIVTIATKLAQHLHCVGMMNIQF 819

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +       V+ +++N +   T     P M+        +L   ++
Sbjct: 820 VVTDD---VYVIDVNPRASRT----VPYMSKVTHLPLAQLATRLI 857



 Score = 74.4 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 45/231 (19%), Positives = 88/231 (38%), Gaps = 9/231 (3%)

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRS 96
           SV  +L    PD     L G  G +  +      +L  L+I    + +     + D+   
Sbjct: 73  SVTKILRATHPDALLPTLGGQTGLNLAMALDQAGVLNELKIQLLGTSLATINQAEDRAAF 132

Query: 97  KQVVSSCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154
           K ++     P+  S  V+  T  +     I  P +++P       G  +      +   L
Sbjct: 133 KTLMKRLHQPIPASTTVHHVTSALSFAEKIGYPVIVRPAFTLGGSGGGIANNAAELTQTL 192

Query: 155 LQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTH 213
            +  + +   + LIEQ + G  E+   VM D     T+I V   + +     ++  +  +
Sbjct: 193 QRGLTMSPVTECLIEQSIAGFKEIEFEVMRDNQG--TKIIVCSMENFDPVGIHTGDSIVY 250

Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
                +    Y++++  A    +A+  RG        DP SR+ + +E+N 
Sbjct: 251 APVQTLTDTEYQQLRTAALTIVEALDIRGGCNVQLAQDPNSRQYYVIEVNP 301


>gi|322807620|emb|CBZ05195.1| pyruvate carboxyl transferase [Clostridium botulinum H04402 065]
          Length = 1144

 Score = 79.4 bits (195), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 78/222 (35%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+           I +            DK++SK V    GVP  P +  
Sbjct: 80  AIHPGYGFLAENSEFARKCREAGIEFIGPTAEMMEKLGDKIKSKIVAEKAGVPTIPGVQK 139

Query: 114 ----NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP-----LDLLQSSSWNHGD 164
                +  ++       P ++K   GG   G+ +++ ++ +             ++   D
Sbjct: 140 PIRSEKEALEFARYCGYPIMLKAAAGGGGRGMRIVRTEEELISSFKSAKNEAKKAFGIDD 199

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + IE+Y++    +   ++GD   ++  +            K          PA  +P  
Sbjct: 200 -IFIEKYLENPKHIEVQILGDKHGNIVHLYERDCSIQRRHQK-----VIEFTPAFALPKK 253

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +E+   A    + +G R     +FL D      +++E+N 
Sbjct: 254 KREEICNDALKIAKTVGYRSAGTLEFLVDTTGNH-YFIEMNP 294


>gi|306827566|ref|ZP_07460847.1| carbamoyl-phosphate synthase, large subunit [Streptococcus pyogenes
           ATCC 10782]
 gi|304430218|gb|EFM33246.1| carbamoyl-phosphate synthase, large subunit [Streptococcus pyogenes
           ATCC 10782]
          Length = 1058

 Score = 79.4 bits (195), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 38/292 (13%), Positives = 100/292 (34%), Gaps = 32/292 (10%)

Query: 24  SALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH-----G---NFGEDG 66
            A++ AG++   +         D   S  L    L  +   NV+      G    FG   
Sbjct: 579 KAIQKAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIDLEQPKGVIVQFGGQT 638

Query: 67  LV---QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQ 121
            +   QA+ E   +    + +     + D+   ++ +   G+P             +++ 
Sbjct: 639 AINLAQALSE-AGVTILGTQVEDLDRAEDRDLFEKALKELGIPQPQGQTATNEEEALEAA 697

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
             I  P +++P        + +++  + +   +  +   +    +L++ Y+ G E     
Sbjct: 698 KKIGFPVLVRPSYVLGGRAMEIVENKEDLREYIRTAVKASPEHPILVDSYIFGKECEVDA 757

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241
           + D    +    +   +       +S  +     P ++   I + +          + C 
Sbjct: 758 ISDGKSVLIPGIMEHIERAGV---HSGDSMAVYPPQQLSKQIQETIAEYTKRLAIGLNCI 814

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           G+    F+    + +V+ +E+N +   T     P ++   G    ++   ++
Sbjct: 815 GMMNVQFVI--KNEQVYVIEVNPRASRT----VPFLSKVTGIPMAQIATKLI 860



 Score = 66.3 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 49/296 (16%), Positives = 106/296 (35%), Gaps = 34/296 (11%)

Query: 25  ALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNVLHGNFG 63
           AL++ G+KV  ++        D+ +                ++   +PD     L    G
Sbjct: 36  ALKEEGYKVILVNSNPATIMTDKEIADKVYIEPLTLEFVNRIIRKERPDAILPTLGAQTG 95

Query: 64  EDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFT 117
            +  +      IL+ LEI    + + A   + D+   KQ++     P+  S +V      
Sbjct: 96  LNMAMALSKAGILDDLEIELLGTKLSAIDQAEDRDLFKQLMQELDQPIPESTIVKTVDEA 155

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IE 176
           +     I  P +++P       G  +   ++ +          +   Q LIE+ + G  E
Sbjct: 156 VTFARDIGYPVIVRPAFTLGGTGGGICSSEEELCEITENGLKLSPVTQCLIERSIAGFKE 215

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +   VM D++ +   + V   + +     ++  +        +     + ++  +    +
Sbjct: 216 IEYEVMRDSADNA--LVVCNMENFDPVGIHTGDSIVFAPTQTLSDIENQMLRDASLKIIR 273

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           A+   G        DP S K + +E+N  P ++  S     +   GY   +L   +
Sbjct: 274 ALKIEGGCNVQLALDPYSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAKI 325


>gi|302871822|ref|YP_003840458.1| carbamoyl-phosphate synthase, large subunit [Caldicellulosiruptor
           obsidiansis OB47]
 gi|302574681|gb|ADL42472.1| carbamoyl-phosphate synthase, large subunit [Caldicellulosiruptor
           obsidiansis OB47]
          Length = 1075

 Score = 79.4 bits (195), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 51/289 (17%), Positives = 104/289 (35%), Gaps = 39/289 (13%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQID-------VDRS--------------VGLV 45
           G ++E + S   G     AL++ G +V  I+        D++              +  +
Sbjct: 21  GQAAEFDYS---GSQACKALKEEGIEVVLINSNPATIMTDKTMADSIYIEPITCEIIEKI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   + D     L G  G +  V+     IL+   +    + I A   + D++  K+++ 
Sbjct: 78  IQKERVDAILPTLGGQTGLNTAVELYKSGILDKYNVKVIGTNIEAIEFAEDRLLFKELMI 137

Query: 102 SCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G PV PS +VN     +     I  P +I+P       G  +   +        +  S
Sbjct: 138 KIGEPVVPSEVVNCVEDGVAFAKKIGFPVIIRPAYTLGGTGGGIANNEDEFVEIARKGLS 197

Query: 160 WNHGDQLLIEQYVDG---IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216
           ++   Q+L+E+ + G   IE       +  L              +     + +S  V P
Sbjct: 198 YSPVHQILVEKSIKGWKEIEYEVMRDSNGCLITVCNMENIDPVGIH-----TGDSIVVAP 252

Query: 217 AK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           ++ +    Y+ ++  A      +   G     F  +P + +   +E+N 
Sbjct: 253 SQTLSDKEYQMLRSSALKIIDVLKIEGGCNVQFALNPENFEYAVIEVNP 301



 Score = 75.9 bits (186), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 36/229 (15%), Positives = 89/229 (38%), Gaps = 19/229 (8%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL--VNRFTMDSQHLISPPYVIKPL 133
            I    +      ++ D+ R  ++++   +   P       +  ++  + +  P +++P 
Sbjct: 654 GIKIFGTSAEGIDIAEDRERFDKILNKLNIKRPPGFTCFALQEALEIANSLGYPVLVRPS 713

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
                 G+ +   D  I   L  + + N    +LI++Y+ G E+    + D      +I 
Sbjct: 714 YVLGGQGMKIAFDDNDIVEMLSYAKNLN-DHPILIDKYIVGKEIEVDAISDGE----DIL 768

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
           +P    +       S +S  + PA+ I   I   +        + + C+G+    F+   
Sbjct: 769 IPGIMEHIERAGVHSGDSISLYPARNISKYIEDRIVEYTHKIAKELECKGLINVQFIV-- 826

Query: 253 LSRKVFWLEIN-----VQPGMTPVSIFPEMAAYA----GYSFRELLLWM 292
            + +++ +E+N       P ++ V+  P +        GY  ++L+  +
Sbjct: 827 QNEELYVIEVNPRGSRTVPFLSKVTGVPMVELATMVSLGYRLKDLVNTV 875


>gi|148381255|ref|YP_001255796.1| pyruvate carboxylase [Clostridium botulinum A str. ATCC 3502]
 gi|148290739|emb|CAL84870.1| pyruvate carboxylase [Clostridium botulinum A str. ATCC 3502]
          Length = 1144

 Score = 79.4 bits (195), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 78/222 (35%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+           I +            DK++SK V    GVP  P +  
Sbjct: 80  AIHPGYGFLAENSEFARKCREAGIEFIGPTAEMMEKLGDKIKSKIVAEKAGVPTIPGVQK 139

Query: 114 ----NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP-----LDLLQSSSWNHGD 164
                +  ++       P ++K   GG   G+ +++ ++ +             ++   D
Sbjct: 140 PIKSEKEALEFARYCGYPIMLKAAAGGGGRGMRIVRTEEELISSFKSAKNEAKKAFGIDD 199

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + IE+Y++    +   ++GD   ++  +            K          PA  +P  
Sbjct: 200 -IFIEKYLENPKHIEVQILGDKHGNIVHLYERDCSIQRRHQK-----VIEFTPAFALPKK 253

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +E+   A    + +G R     +FL D      +++E+N 
Sbjct: 254 KREEICNDALKIAKTVGYRSAGTLEFLVDTTGNH-YFIEMNP 294


>gi|167585203|ref|ZP_02377591.1| hypothetical protein BuboB_07697 [Burkholderia ubonensis Bu]
          Length = 408

 Score = 79.4 bits (195), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 59/265 (22%), Positives = 96/265 (36%), Gaps = 49/265 (18%)

Query: 19  GKACASALEDAGF--KVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLE 76
            +A   ALEDAG    V+ +        V A                    + ++LEL  
Sbjct: 56  AQAVKRALEDAGLLSSVAAVVAGNQFVTVTAA------------------KLASLLELRG 97

Query: 77  IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLK 134
           +P      LA+   + K  ++      G P     LV        +   I  P VIKP  
Sbjct: 98  VP-----PLAAESGVHKDLARHAYRKAGAPSLDYALVATLDDAQAAAARIGYPLVIKPTS 152

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHG-------DQLLIEQYVDGIELTCGV-MGDAS 186
             SS G+ +++   ++     Q    + G        + L+E + DG E +  + + D S
Sbjct: 153 AASSKGVTLLQDAAALEPAYRQLQQTDFGMFGLARRTEYLLEAFADGREFSVELALVDGS 212

Query: 187 L---DVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR-G 242
           +    VTE  V    F+        +   H  PA+IP    + +   A  A QA+G   G
Sbjct: 213 VRFAGVTEKWVTSPPFF--------VELGHAFPARIPAQQRQALLDAARSATQALGLNTG 264

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPG 267
           +   +  +         +E N +PG
Sbjct: 265 VFHIELRWTSTG--PRIIETNPRPG 287


>gi|330953381|gb|EGH53641.1| 3-methylcrotonyl-CoA carboxylase alpha subunit [Pseudomonas
           syringae Cit 7]
          Length = 649

 Score = 79.4 bits (195), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 76/221 (34%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      +E   + +      A      K  +K ++   GVP+ P    
Sbjct: 81  AIHPGYGFLSENADFARAIENAGLIFLGPPASAIDAMGSKSAAKALMEQAGVPLVPGYHG 140

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
               ++    +   I  P ++K   GG   G+ V++    +   L  +           +
Sbjct: 141 EAQDIETFRAAAERIGYPVLLKATAGGGGKGMKVVEHIGELAEALASAQREALSSFGDAR 200

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           +L+E+YV     +   V  D       +            K          PA  +   +
Sbjct: 201 MLVEKYVLTPRHVEIQVFADRHGHCLYLNERDCSIQRRHQK-----VVEEAPAPGLTATL 255

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            K +   A  A QAIG  G    +FL D    + F++E+N 
Sbjct: 256 RKAMGEAAVKAAQAIGYVGAGTVEFLLDAR-GEFFFMEMNT 295


>gi|308179622|ref|YP_003923750.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus
           plantarum subsp. plantarum ST-III]
 gi|308045113|gb|ADN97656.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus
           plantarum subsp. plantarum ST-III]
          Length = 1020

 Score = 79.4 bits (195), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 34/225 (15%), Positives = 80/225 (35%), Gaps = 14/225 (6%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--FTMDSQHLISPPYV 129
           L  L +    + + A+ L+ D+      +    +       V        + H I  P +
Sbjct: 644 LTKLGVTVLGTSVSATDLTEDRQSFADCLRLLKIAQAAGTTVTELSGARQAAHAIGYPLL 703

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           ++P        + ++  D  +   +  + +  HG  +L++QY+ G E    V+ D +   
Sbjct: 704 VRPSFVLGGRAMAIVHNDHELTPVIKSAVAAGHGAPILMDQYLAGTECEVDVLSDGTSCF 763

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               +   +           +S  V P + +   +  ++  +A    Q + C G+    F
Sbjct: 764 IPGIMEHIEGAGVHS----GDSITVYPPQHLSPAVQDKIVTIATKLAQHLHCVGMMNIQF 819

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +       V+ +++N +   T     P M+        +L   ++
Sbjct: 820 VVTDD---VYVIDVNPRASRT----VPYMSKVTHLPLAQLATRLI 857



 Score = 74.4 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 45/231 (19%), Positives = 88/231 (38%), Gaps = 9/231 (3%)

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRS 96
           SV  +L    PD     L G  G +  +      +L  L+I    + +     + D+   
Sbjct: 73  SVTKILRAAHPDALLPTLGGQTGLNLAMALDQAGVLNELKIQLLGTSLATINQAEDRAAF 132

Query: 97  KQVVSSCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154
           K ++     P+  S  V+  T  +     I  P +++P       G  +      +   L
Sbjct: 133 KTLMKRLHQPIPASTTVHHVTSALSFAEKIGYPVIVRPAFTLGGSGGGIANNAAELTQTL 192

Query: 155 LQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTH 213
            +  + +   + LIEQ + G  E+   VM D     T+I V   + +     ++  +  +
Sbjct: 193 QRGLTMSPVTECLIEQSIAGFKEIEFEVMRDNQG--TKIIVCSMENFDPVGIHTGDSIVY 250

Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
                +    Y++++  A    +A+  RG        DP SR+ + +E+N 
Sbjct: 251 APVQTLTDTEYQQLRTAALTIVEALDIRGGCNVQLAQDPNSRQYYVIEVNP 301


>gi|282889779|ref|ZP_06298318.1| hypothetical protein pah_c004o157 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281500353|gb|EFB42633.1| hypothetical protein pah_c004o157 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 454

 Score = 79.4 bits (195), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 75/220 (34%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+    +I E   + +      + AL  DK R+K    S G PV P    
Sbjct: 77  AVHPGYGFLSENTNFASICESCGLNFIGPSPKSIALLGDKARAKATAMSVGCPVIPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS----IPLDLLQSSSWNHGDQ 165
            +      ++    I  P  IK + GG   GI +   +            ++ +      
Sbjct: 137 VVSDIIQALEVAKEIGFPIFIKAVAGGGGKGIRIAYHEAEFNKLFLAARAEAEASFGNPD 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+ +     +   V+GD   +   +            K             +   + 
Sbjct: 197 VYLEKMIMSPRHVEVQVVGDKHGNYIHLGERDCTIQRRRQK----LIEEAPSPVLSAKLR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +++ + A    +A G   +   +FL D      +++E+N 
Sbjct: 253 EKMGQAAVKVVKAAGYHSVGTVEFLLD-QDHHFYFMEVNT 291


>gi|194397759|ref|YP_002037106.1| acetyl-CoA carboxylase biotin carboxylase subunit [Streptococcus
           pneumoniae G54]
 gi|194357426|gb|ACF55874.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus
           pneumoniae G54]
          Length = 455

 Score = 79.4 bits (195), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 75/220 (34%), Gaps = 16/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  FG   E+     + E + I +         +  DK+ ++  +   GVPV P    
Sbjct: 77  AIHPGFGFLSENSKFATMCEEVGIKFIGPSGHVMDMMGDKINARAQMIKAGVPVIPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
            +  +   +     I  P ++K   GG   GI  ++K   +      +SS          
Sbjct: 137 EVHNSEEALIVAEKIGYPVMLKASAGGGGKGIRKVEKPDDLVSAFETASSEAKANYGNGA 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+ +     +   ++GD    V  +            K             I   + 
Sbjct: 197 MYIERVIYPARHIEVQILGDEHGHVIHLGERDCSLQRNNQKVL----EESPSIAIGKTLR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            E+   A  A + +G       +FL D  S   +++E+N 
Sbjct: 253 HEIGAAAVRAAEFVGYENAGTIEFLLDEASSNFYFMEMNT 292


>gi|168182063|ref|ZP_02616727.1| pyruvate carboxylase [Clostridium botulinum Bf]
 gi|237796752|ref|YP_002864304.1| pyruvate carboxylase [Clostridium botulinum Ba4 str. 657]
 gi|182674726|gb|EDT86687.1| pyruvate carboxylase [Clostridium botulinum Bf]
 gi|229260868|gb|ACQ51901.1| pyruvate carboxylase [Clostridium botulinum Ba4 str. 657]
          Length = 1144

 Score = 79.4 bits (195), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 79/222 (35%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       +   I +            DK++SK V    GVP  P +  
Sbjct: 80  AIHPGYGFLAENSEFARKCKEAGIEFIGPTAEMMEKLGDKIKSKIVAEKAGVPTIPGVQK 139

Query: 114 ----NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP-----LDLLQSSSWNHGD 164
                +  ++       P ++K   GG   G+ +++ ++ +             ++   D
Sbjct: 140 PIKSEKEALEFARYCGYPIMLKAAAGGGGRGMRIVRTEEELISSFKSAKNEAKKAFGIDD 199

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + IE+Y++    +   ++GD   ++  +            K          PA  +P  
Sbjct: 200 -IFIEKYLENPKHIEVQILGDKHGNIVHLYERDCSIQRRHQK-----VIEFTPAFALPKK 253

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +E+   A    + +G R     +FL D      +++E+N 
Sbjct: 254 KREEICNDALKIAKTVGYRSAGTLEFLVDTTGNH-YFIEMNP 294


>gi|15674870|ref|NP_269044.1| carbamoyl phosphate synthase large subunit [Streptococcus pyogenes
           M1 GAS]
 gi|71910456|ref|YP_282006.1| carbamoyl phosphate synthase large subunit [Streptococcus pyogenes
           MGAS5005]
 gi|22095524|sp|Q9A0C6|CARB_STRP1 RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|13622006|gb|AAK33765.1| putative carbamoylphosphate synthetase [Streptococcus pyogenes M1
           GAS]
 gi|71853238|gb|AAZ51261.1| carbamoyl-phosphate synthase large chain [Streptococcus pyogenes
           MGAS5005]
          Length = 1058

 Score = 79.4 bits (195), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 38/292 (13%), Positives = 100/292 (34%), Gaps = 32/292 (10%)

Query: 24  SALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH-----G---NFGEDG 66
            A++ AG++   +         D   S  L    L  +   NV+      G    FG   
Sbjct: 579 KAIQKAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIDLEQPKGVIVQFGGQT 638

Query: 67  LV---QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQ 121
            +   QA+ E   +    + +     + D+   ++ +   G+P             +++ 
Sbjct: 639 AINLAQALSE-AGVTILGTQVEDLDRAEDRDLFEKALKELGIPQPQGQTATNEEEALEAA 697

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
             I  P +++P        + +++  + +   +  +   +    +L++ Y+ G E     
Sbjct: 698 KKIGFPVLVRPSYVLGGRAMEIVENKEDLREYIRTAVKASPEHPILVDSYIFGKECEVDA 757

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241
           + D    +    +   +       +S  +     P ++   I + +          + C 
Sbjct: 758 ISDGKSVLIPGIMEHIERAGV---HSGDSMAVYPPQQLSKQIQETIAEYTKRLAIGLNCI 814

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           G+    F+    + +V+ +E+N +   T     P ++   G    ++   ++
Sbjct: 815 GMMNVQFVI--KNEQVYVIEVNPRASRT----VPFLSKVTGIPMAQIATKLI 860



 Score = 69.4 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 50/296 (16%), Positives = 107/296 (36%), Gaps = 34/296 (11%)

Query: 25  ALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNVLHGNFG 63
           AL++ G+KV  ++        D+ +                ++   +PD     L G  G
Sbjct: 36  ALKEEGYKVILVNSNPATIMTDKEIADKVYIEPLTLEFVNRIIRKERPDAILPTLGGQTG 95

Query: 64  EDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFT 117
            +  +      IL+ LEI    + + A   + D+   KQ++     P+  S +V      
Sbjct: 96  LNMAMALSKAGILDDLEIELLGTKLSAIDQAEDRDLFKQLMQELDQPIPESTIVKTVDEA 155

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IE 176
           +     I  P +++P       G  +   ++ +          +   Q LIE+ + G  E
Sbjct: 156 VTFARDIGYPVIVRPAFTLGGTGGGICSSEEELCEITENGLKLSPVTQCLIERSIAGFKE 215

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +   VM D++ +   + V   + +     ++  +        +     + ++  +    +
Sbjct: 216 IEYEVMRDSADNA--LVVCNMENFDPVGIHTGDSIVFAPTQTLSDIENQMLRDASLKIIR 273

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           A+   G        DP S K + +E+N  P ++  S     +   GY   +L   +
Sbjct: 274 ALKIEGGCNVQLALDPYSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAKI 325


>gi|56459985|ref|YP_155266.1| 3-methylcrotonyl-CoA carboxylase alpha chain [Idiomarina loihiensis
           L2TR]
 gi|56178995|gb|AAV81717.1| 3-methylcrotonyl-CoA carboxylase alpha chain [Idiomarina loihiensis
           L2TR]
          Length = 656

 Score = 79.4 bits (195), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 41/221 (18%), Positives = 84/221 (38%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       +  +I +    + + A    K  +K ++   GVP+ P    
Sbjct: 77  AIHPGYGFLSENEDFADQCQANDIIFVGPPVSSIAAMGSKSAAKSIMQDAGVPLVPGYHG 136

Query: 114 NRFTM----DSQHLISPPYVIKPLKGGSSLGIIVIKK----DQSIPLDLLQSSSWNHGDQ 165
           +   +         +  P ++K   GG   G+ V++     D ++     ++ S    D+
Sbjct: 137 SEQDIKTLKAEAEKVGFPLLLKAAYGGGGKGMRVVENMGEFDDALNSAKREAKSSFGNDK 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           +L+E+++     +   V  D   +   +A          ++          PA  +    
Sbjct: 197 MLMERFIRNPRHVEIQVFTDEHGNAVYLAE-----RDCSVQRRHQKVLEEAPAPALTEKT 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             E+   A  A QAI   G    +FLFD  S + +++E+N 
Sbjct: 252 RTEMGEAAIRAAQAINYVGAGTVEFLFD-QSGEFYFMEMNT 291


>gi|297181470|gb|ADI17658.1| acetyl/propionyl-CoA carboxylase, alpha subunit [uncultured alpha
           proteobacterium HF0130_20P23]
          Length = 668

 Score = 79.0 bits (194), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 45/283 (15%), Positives = 103/283 (36%), Gaps = 43/283 (15%)

Query: 19  GKACASALEDAGFKVSQI--DVDRSVGLVLA---------------HLKPDLAFNV---- 57
               AS     G +   I  DVDR    V A               +L+ D   +     
Sbjct: 14  ACRIASTARRMGIRTVAIYSDVDRDALHVEACDEAVAIGGTSSAESYLEIDKVLSAAIET 73

Query: 58  ----LHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
               +H  +G   E+ +        +I +      A  +   K ++K+++ S GVP+ P 
Sbjct: 74  ESDAIHPGYGFLSENPVFAKECAAAKIIFVGPPATAIEVMGSKSKAKKLMESAGVPLVPG 133

Query: 111 ILVNRFTM----DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNH 162
                  +       + I  P ++K   GG   G+ +++    +   +     ++ +   
Sbjct: 134 YHGEEQEVSYLSQKANEIGFPVLVKASAGGGGRGMRIVESLDDLETAVNSSKREAKAAFS 193

Query: 163 GDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL 221
            D L++E+++ +   +   +  D   ++  +        S + +Y  + +       + +
Sbjct: 194 DDHLMLEKFITEPRHIEVQIFADEKGNIVHLFERD---CSVQRRYQKV-TEEAPAPNLSI 249

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +  K++   A  A +A    G    +F+ D    + +++E+N 
Sbjct: 250 ETRKKLFEAALAAARATNYVGAGTIEFIADA--NQFYFIEMNT 290


>gi|261417051|ref|YP_003250734.1| Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain protein
           [Fibrobacter succinogenes subsp. succinogenes S85]
 gi|261373507|gb|ACX76252.1| Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain protein
           [Fibrobacter succinogenes subsp. succinogenes S85]
          Length = 413

 Score = 79.0 bits (194), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 50/267 (18%), Positives = 90/267 (33%), Gaps = 43/267 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID--------------------VDR 40
           +A+++GG S    V L       + L++ G+ V  ID                       
Sbjct: 6   LAIVLGGTSP--HVLLV------NKLKERGYYVLLIDYLENPPAKKVADEHLRESTLDQD 57

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQA------ILELLEIPYTHSGILASALSMDKM 94
            V  +    K DL  +          + QA      + E L +P+ +S    S    DK 
Sbjct: 58  KVLEIAKERKADLVISTC--------IDQANSVCCYVAEKLGLPHPYS-YKTSLEVTDKG 108

Query: 95  RSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154
             K++    G+P               +L+  P V+KP+   SS G+  +  D+   L +
Sbjct: 109 LMKRIFVENGIPTSNYTTTESVDSIDWNLVQYPAVVKPVDCNSSKGVRRVDSDEETRLRV 168

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHV 214
            ++   +     +IE +  G E+    +   S     +   K    S        +   V
Sbjct: 169 AEAIEMSRTKTAIIEGFNSGAEIQVDCVSTQSGVKVMMTRQKQKIASDGNDMVLQSYGSV 228

Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCR 241
            PA +  +  ++ Q +A     A    
Sbjct: 229 FPAPLSDEFKRQAQEIAEKIANAFKLE 255


>gi|217978744|ref|YP_002362891.1| urea carboxylase [Methylocella silvestris BL2]
 gi|217504120|gb|ACK51529.1| urea carboxylase [Methylocella silvestris BL2]
          Length = 1172

 Score = 79.0 bits (194), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 33/220 (15%), Positives = 72/220 (32%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      L    I +             K  +++V      P+ P   +
Sbjct: 77  AVHPGYGFLSENPGFAERLAAEGIKFIGPQPQHMRSFGLKHSAREVAQRANAPLLPGSGL 136

Query: 114 NRFTMDS---QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQL 166
                D+      I  P ++K   GG  +G+ +      +                 +++
Sbjct: 137 LDSAEDALKEAERIGYPVMLKSTAGGGGIGMQLCFGPDELAARFESVRRLGANNFGDNRV 196

Query: 167 LIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIY 224
            +E++V     +   + GD    V  +           L+  +       PA  +  +  
Sbjct: 197 YLEKFVARARHVEVQIFGDGKGGVVALGE-----RDCSLQRRNQKVIEETPAPGLTDESR 251

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             ++  A    QA+        +F++D   +K ++LE+N 
Sbjct: 252 AALREAAIALGQAVNYESAGTVEFVYDADQQKFYFLEVNT 291


>gi|109391478|gb|ABG33858.1| Yen9 [Yersinia sp. MH-1]
          Length = 1210

 Score = 79.0 bits (194), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 41/251 (16%), Positives = 84/251 (33%), Gaps = 14/251 (5%)

Query: 22  CASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81
            A AL       S +D+D+ +         +  F   +G   E        E   I +  
Sbjct: 47  IAVALGGDKASDSYLDIDK-ILAAARQSGAEAIFPG-YGFLSERAEFAQACEDAGIVFIG 104

Query: 82  SGILASALSMDKMRSKQVVSSCGVPVCPSILVN---RFTMDSQHLISPPYVIKPLKGGSS 138
                 A    K R++ + ++  +P+ P   +    R    +   I  P ++K   GG  
Sbjct: 105 PTAEHIASFGLKHRARALAAAVAMPMTPGTSLLATLREAQRAAEDIGYPVMLKTTAGGGG 164

Query: 139 LGIIVIKKDQSIPLDLLQSSS----WNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIA 193
           +G++    +  +             +   D + IE+++D    L   + GD    V  + 
Sbjct: 165 IGLMRCDNEGVLVEAWDSVKRMGQQFFSDDGVFIERFIDRARHLEVQIFGDGKGRVVALG 224

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
                      K             +P    + +   A    +++  R +   +F++D  
Sbjct: 225 ERDCSLQRRNQK----VVEETPAPNLPQATREALYASAIALGESVNYRSVGTVEFIYDAA 280

Query: 254 SRKVFWLEINV 264
           S   ++LE+N 
Sbjct: 281 SDAFYFLEVNT 291


>gi|223934510|ref|ZP_03626431.1| urea carboxylase [bacterium Ellin514]
 gi|223896973|gb|EEF63413.1| urea carboxylase [bacterium Ellin514]
          Length = 1201

 Score = 79.0 bits (194), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 39/256 (15%), Positives = 85/256 (33%), Gaps = 30/256 (11%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       E   I +             K R++++   C VP+ P   +
Sbjct: 75  AIHPGYGFLSENADFARACEDAGIRFIGPTPSQMEDFGLKHRARELAGECNVPLLPGTQL 134

Query: 114 NRFTMDS---QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN----HGDQL 166
                ++      I  P ++K   GG  +G+ V   +  +       +  +        L
Sbjct: 135 LSSVDEAVQRASGIGYPVMLKSTAGGGGIGMRVCNNEADLREHFDSVTRLSQTNFKNGGL 194

Query: 167 LIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
            +E++V     +   + GD    V  +            K             +P ++ +
Sbjct: 195 FLEKFVRHARHIEVQIFGDGQGRVLALGERDCSLQRRNQK----VVEETPAPNLPPEVRE 250

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285
           ++   A    + +  R     +F++D  +   ++LE+N             +    G + 
Sbjct: 251 QLFACARRLGERVKYRSAGTVEFVYDAEAGAFYFLEVNT-----------RLQVEHGVTE 299

Query: 286 R----ELLLWMVEDAS 297
                +L+ WMV  A+
Sbjct: 300 EVLGIDLVEWMVRLAA 315


>gi|29337240|sp|Q9RLS9|CARY_LACPL RecName: Full=Carbamoyl-phosphate synthase arginine-specific large
           chain; AltName: Full=Carbamoyl-phosphate synthetase
           ammonia chain
          Length = 1020

 Score = 79.0 bits (194), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 34/225 (15%), Positives = 80/225 (35%), Gaps = 14/225 (6%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--FTMDSQHLISPPYV 129
           L  L +    + + A+ L+ D+      +    +       V        + H I  P +
Sbjct: 644 LTKLGVTVLGTSVSATDLTEDRQSFADCLRLLKIAQAAGTTVTELSGARQAAHAIGYPLL 703

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           ++P        + ++  D  +   +  + +  HG  +L++QY+ G E    V+ D +   
Sbjct: 704 VRPSFVLGGRAMAIVHNDHELTPVIKSAVAAGHGAPILMDQYLAGTECEVDVLSDGTSCF 763

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               +   +           +S  V P + +   +  ++  +A    Q + C G+    F
Sbjct: 764 IPGIMEHIEGAGVHS----GDSITVYPPQHLSPAVQDKIVTIATKLAQHLHCVGMMNIQF 819

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +       V+ +++N +   T     P M+        +L   ++
Sbjct: 820 VVTDD---VYVIDVNPRASRT----VPYMSKVTHLPLAQLATRLI 857



 Score = 74.4 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 45/231 (19%), Positives = 88/231 (38%), Gaps = 9/231 (3%)

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRS 96
           SV  +L    PD     L G  G +  +      +L  L+I    + +     + D+   
Sbjct: 73  SVTKILRAAHPDALLPTLGGQTGLNLAMALDQAGVLNELKIQLLGTSLATINQAEDRAAF 132

Query: 97  KQVVSSCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154
           K ++     P+  S  V+  T  +     I  P +++P       G  +      +   L
Sbjct: 133 KTLMKRLHQPIPASTTVHHVTSALSFAEKIGYPVIVRPAFTLGGSGGGIANNAAELTQTL 192

Query: 155 LQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTH 213
            +  + +   + LIEQ + G  E+   VM D     T+I V   + +     ++  +  +
Sbjct: 193 QRGLTMSPVTECLIEQSIAGFKEIEFEVMRDNQG--TKIIVCSMENFDPVGIHTGDSIVY 250

Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
                +    Y++++  A    +A+  RG        DP SR+ + +E+N 
Sbjct: 251 APVQTLTDTEYQQLRTAALTIVEALDIRGGCNVQLAQDPNSRQYYVIEVNP 301


>gi|28377412|ref|NP_784304.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus
           plantarum WCFS1]
 gi|28270244|emb|CAD63145.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus
           plantarum WCFS1]
          Length = 1020

 Score = 79.0 bits (194), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 34/225 (15%), Positives = 80/225 (35%), Gaps = 14/225 (6%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--FTMDSQHLISPPYV 129
           L  L +    + + A+ L+ D+      +    +       V        + H I  P +
Sbjct: 644 LTKLGVTVLGTSVSATDLTEDRQSFADCLRLLKIAQAAGTTVTELSGARQAAHAIGYPLL 703

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           ++P        + ++  D  +   +  + +  HG  +L++QY+ G E    V+ D +   
Sbjct: 704 VRPSFVLGGRAMAIVHNDHELTPVIKSAVAAGHGAPILMDQYLAGTECEVDVLSDGTSCF 763

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               +   +           +S  V P + +   +  ++  +A    Q + C G+    F
Sbjct: 764 IPGIMEHIEGAGVHS----GDSITVYPPQHLSPAVQDKIVTIATKLAQHLHCVGMMNIQF 819

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +       V+ +++N +   T     P M+        +L   ++
Sbjct: 820 VVTDD---VYVIDVNPRASRT----VPYMSKVTHLPLAQLATRLI 857



 Score = 72.1 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 45/231 (19%), Positives = 88/231 (38%), Gaps = 9/231 (3%)

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRS 96
           SV  +L    PD     L G  G +  +      +L  L+I    + +     + D+   
Sbjct: 73  SVTKILRAAHPDALLPTLGGQTGLNLAMALDQAGVLNELKIQLLGTSLATINQAEDRAAF 132

Query: 97  KQVVSSCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154
           K ++     P+  S  V+  T  +     I  P +++P       G  +      +   L
Sbjct: 133 KTLMKRLHQPIPASTTVHHVTSALSFAEKIGYPVIVRPAFTLGGSGGGIANNAAELTQTL 192

Query: 155 LQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTH 213
            +  + +   + LIEQ + G  E+   VM D     T+I V   + +     ++  +  +
Sbjct: 193 QRGLTMSPVTECLIEQSIAGFKEIEFEVMRDNQG--TKIIVCSMENFDPVGIHTGDSIVY 250

Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
                +    Y++++  A    +A+  RG        DP SR+ + +E+N 
Sbjct: 251 APVQTLTDTEYQQLRTAALTIVEALDIRGGYNVQLAQDPNSRQYYVIEVNP 301


>gi|289579317|ref|YP_003477944.1| carbamoyl-phosphate synthase, large subunit [Thermoanaerobacter
           italicus Ab9]
 gi|289529030|gb|ADD03382.1| carbamoyl-phosphate synthase, large subunit [Thermoanaerobacter
           italicus Ab9]
          Length = 1072

 Score = 79.0 bits (194), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 54/287 (18%), Positives = 107/287 (37%), Gaps = 35/287 (12%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI---------DVDRS------------VGLV 45
           G ++E + S   G     +L++ G +V  +         D D +            V  +
Sbjct: 21  GQAAEFDYS---GTQACKSLKEEGLQVVLVNNNPATIMTDTDIADIVYIENPTVCVVEKI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +A  KPD     L G  G +  V    + IL+   +    +   +   + D+   K+ + 
Sbjct: 78  IAKEKPDGILATLGGQTGLNLAVKLKEEGILDKYNVKLLGTSFESIKTAEDRELFKRKMQ 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G PV  S+ V      +        P +I+P       G  +   D+ +   +     
Sbjct: 138 EIGEPVAESVTVTNIEDALKFAKNYGYPLIIRPAYTLGGTGGGIAHNDEELISIVSLGLK 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   ++L+E+ + G  E+   VM DA  +   I     + +     ++  +S  V P +
Sbjct: 198 KSMVGEVLVEKSLYGWKEIEFEVMRDADDNCITIC--SMENFDPVGVHT-GDSIVVAPVQ 254

Query: 219 -IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +    Y+ ++  +    +A+   G     F  DP S K + +E+N 
Sbjct: 255 TLSDYEYQMLRSASIKIIKALKIEGGCNIQFALDPESHKYYVIEVNP 301



 Score = 74.0 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 33/224 (14%), Positives = 77/224 (34%), Gaps = 16/224 (7%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--SILVNRFTMDSQHLISPPYVIKPL 133
            +    +   +  +S D+ +  +++    +        L      D    +  P +++P 
Sbjct: 650 GVKILGTSYESIDISEDREKFSKLLKELNINQPKGDYALTVEDAKDIALKLGFPLLVRPS 709

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
                  +  +   Q +   +  ++  + G  +LI++Y+DG E+    + D    +    
Sbjct: 710 YVIGGQSMEKVNTLQELIDYVKHATEISPGKPILIDKYIDGREVEIDAVADGECVLIPGI 769

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
           +   +           +S  + PA+ +       +        +A+  +G+    F    
Sbjct: 770 MEHIERAGVHS----GDSFSIYPARNLSEREINTIIEYTERISKALNVKGLINIQFAVKE 825

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
               V+ LE+N +   T     P M+   G     L+   VE A
Sbjct: 826 --GTVYVLEVNPRASRT----VPIMSKATGVP---LVKLAVEIA 860


>gi|227508335|ref|ZP_03938384.1| carbamoyl-phosphate synthase (glutamine-hydrolyzing) [Lactobacillus
           brevis subsp. gravesensis ATCC 27305]
 gi|227192224|gb|EEI72291.1| carbamoyl-phosphate synthase (glutamine-hydrolyzing) [Lactobacillus
           brevis subsp. gravesensis ATCC 27305]
          Length = 1021

 Score = 79.0 bits (194), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 49/273 (17%), Positives = 96/273 (35%), Gaps = 31/273 (11%)

Query: 20  KACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFNVL 58
           +AC S L + G+ V  ++ +                      S+  +L    PD     L
Sbjct: 32  QACLS-LREEGYSVILVNSNPATIMTDNEIADKVYLDPLTVPSLKKILEKEHPDAILPTL 90

Query: 59  HGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
            G  G +  V+     IL+ L I    + +     + D+ + K ++     P+  S  V 
Sbjct: 91  GGQTGLNLAVELAKDGILDKLGIELLGTSLHTINQAEDREQFKDLMKELHQPIPDSKTVY 150

Query: 115 RFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                +D  H I  P +I+P       G  +   D  +   L +  + +   + L+E+ +
Sbjct: 151 NLEDGLDFAHEIDYPVIIRPAYTLGGTGGGIAHNDDEMKTILNRGLTMSPSTECLVEKSI 210

Query: 173 DG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
            G  E+   VM D     + I V   + +     ++  +        +    Y+ ++  +
Sbjct: 211 AGYKEIEFEVMRDHHG--SSIIVTGMENFDPVGVHTGDSIVFAPTQTLTDKEYQRLRDAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
                A+   G        DP S   + +E+N 
Sbjct: 269 LTIVNALKIEGGCNVQLAQDPTSENYYVIEVNP 301



 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 45/296 (15%), Positives = 101/296 (34%), Gaps = 37/296 (12%)

Query: 22  CASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH-----GNFGEDGL 67
           C  A++ AG     I         D   S  L    L  D   NV++     G   E G 
Sbjct: 579 CVKAIQAAGKNAIIINNNPETVSTDFSISDKLYFEPLDIDSVMNVINLEKPMGVIVEFGG 638

Query: 68  VQAI-----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGV--PVCPSILVNRFTMDS 120
             AI     L    +    + +     + ++   + ++    +  P   + +        
Sbjct: 639 QTAINLTEELTKHGVQILGTSMHGIEETENRHDFEDLLIDQNIAHPQGDTAMNGHEAHAI 698

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            + +  P +++P       G+ V+   + +   L+ +   + G  +LI+QY+ G E    
Sbjct: 699 ANKLGYPVLVRPSFVLGGKGMAVVHNGEELDEYLVPALKASAGQPILIDQYIPGTECEVD 758

Query: 181 VMGDAS---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           ++ D     +      +  S  +S        +     P  +  +  +++  +A    + 
Sbjct: 759 ILSDGKDVFVPGIMEHLEGSGIHS------GDSIAMYPPQHLTDEQKEKIVSIATKIGKK 812

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +   G+    F+    +  V+ +E+N +   T     P M+        +L   ++
Sbjct: 813 VHAVGMMNIQFI---CANDVYVIEVNPRASRT----VPFMSKITKMHLAQLATQLI 861


>gi|197105314|ref|YP_002130691.1| acetyl-CoA carboxylase, biotin carboxylase [Phenylobacterium
           zucineum HLK1]
 gi|196478734|gb|ACG78262.1| acetyl-CoA carboxylase, biotin carboxylase [Phenylobacterium
           zucineum HLK1]
          Length = 450

 Score = 79.0 bits (194), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 82/220 (37%), Gaps = 18/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     I+      +         L  DK+ +KQ V   G+PV P    
Sbjct: 77  AIHPGYGFLSENARFAEIVNAHGFTFIGPKPEHIKLMGDKITAKQAVKDAGIPVVPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
            +        +   I  P +IK   GG   G+ V + ++ +   +     ++ +    D 
Sbjct: 137 AVTTEEEAFAAAKAIGFPVLIKAAAGGGGRGMKVARNEEELVEAVQTARSEAKAAFGDDA 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+Y+     +   V+ D+  +V  +            K             I     
Sbjct: 197 IYMERYLQTPRHIELQVVADSHGNVVHLGERDCSLQRRHQKVL----EEAPSPVIDAAAR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +++ ++   A +AIG  G+   +FL+     + F++E+N 
Sbjct: 253 EKIGKVVVDAVRAIGYLGVGTIEFLY--EDGEFFFIEMNT 290


>gi|325003226|ref|ZP_08124338.1| carbamoyl-phosphate synthase L chain ATP-binding protein
           [Pseudonocardia sp. P1]
          Length = 667

 Score = 79.0 bits (194), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 42/223 (18%), Positives = 81/223 (36%), Gaps = 20/223 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+           I +    + A      K+ +K+++   GVPV P   V
Sbjct: 78  AIHPGYGFLSENAGFARACADEGITFVGPPVEAIEAMGSKIAAKELMEKAGVPVLPGATV 137

Query: 114 NRFTMDSQHL-------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH---- 162
           +                I  P ++K   GG   G+ +++    +   +  +         
Sbjct: 138 DDAEEVDAATVAAMADGIGYPLLVKAAYGGGGRGMRIVRAADEVVDAVTGARREATSAFG 197

Query: 163 GDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL 221
              + +E+YV D   +   + GD    V  +   +    S + +Y  +      PA +  
Sbjct: 198 NGTVFLERYVEDPRHVEVQIFGDTHGTVVHLFERE---CSIQRRYQKIIEEAPSPA-VDD 253

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +  ++   A  A  AIG  G    +F+  P   + F+LE+N 
Sbjct: 254 ALRAQLGDAAVAAGAAIGYTGAGTVEFVMAP-DGEFFFLEVNT 295


>gi|325675427|ref|ZP_08155111.1| acetyl/propionyl-CoA carboxylase [Rhodococcus equi ATCC 33707]
 gi|325553398|gb|EGD23076.1| acetyl/propionyl-CoA carboxylase [Rhodococcus equi ATCC 33707]
          Length = 674

 Score = 79.0 bits (194), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 34/197 (17%), Positives = 74/197 (37%), Gaps = 16/197 (8%)

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSI----LVNRFTMDSQHLISPPYVIKPLK 134
           +      A  +  DK+ +K  V++  VPV P I    L +   + +   I  P ++KP  
Sbjct: 105 FLGPSARAIEVMGDKITAKNAVAAFDVPVVPGIARPGLSDAELIAAADDIGYPVLVKPSA 164

Query: 135 GGSSLGIIVIKKDQSIPLDLL-----QSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           GG   G+ +++    +P  L+      +S++   D L +E++V     +   ++ D   +
Sbjct: 165 GGGGKGMRLVEDAADLPGALVSARREAASAFG-DDTLFLERFVLRPRHIEVQILADGHGN 223

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           V  +   +        K             +       +   A    +++   G    +F
Sbjct: 224 VVHLGERECSLQRRHQK----VIEEAPSPLLDAATRARIGAAACDTARSVDYTGAGTVEF 279

Query: 249 LFDPLS-RKVFWLEINV 264
           +       + F++E+N 
Sbjct: 280 IVSADRPDEFFFMEMNT 296


>gi|282848798|ref|ZP_06258191.1| pyruvate carboxylase [Veillonella parvula ATCC 17745]
 gi|282581452|gb|EFB86842.1| pyruvate carboxylase [Veillonella parvula ATCC 17745]
          Length = 1148

 Score = 79.0 bits (194), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 44/278 (15%), Positives = 96/278 (34%), Gaps = 28/278 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59
           +A+     S E  +SL   +A  + L   G K     +D   +  +      D     +H
Sbjct: 31  VAI----YSKEDTLSLHRNQADEAYLVGDGKKPVDAYLDIEDIIRIAKEHDID----AIH 82

Query: 60  GNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS---ILV 113
             +G   E+       E   I +    I    +  DK+ +++      +P+ P     L 
Sbjct: 83  PGYGFLSENEGFARRCEEEGIIFIGPKIKHLNMFGDKVNAREQAKLAKIPMIPGSDGALK 142

Query: 114 NRFTMDS-QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQLLI 168
           +   ++        P +IK + GG   G+  +   + +         ++ +    D + +
Sbjct: 143 DYAQLEEFADTHGFPLMIKAVNGGGGRGMREVHHKEDLRDAYDRAKSEAKAAFGDDDVYV 202

Query: 169 EQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKE 226
           E+ + +   +   ++GD   +V              ++        + PA  + L+  K 
Sbjct: 203 EKLIVEPKHIEVQILGDEHGNVV-----HLHERDCSVQRRHQKVVEMAPAFALSLETRKA 257

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           V   A    + +G       +FL        +++E+N 
Sbjct: 258 VCDAAVKIMKNVGYVNAGTVEFLVTA-DGSFYFIEVNP 294


>gi|297588117|ref|ZP_06946761.1| pyruvate carboxylase [Finegoldia magna ATCC 53516]
 gi|297574806|gb|EFH93526.1| pyruvate carboxylase [Finegoldia magna ATCC 53516]
          Length = 1139

 Score = 79.0 bits (194), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 35/222 (15%), Positives = 73/222 (32%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       +   I +            DK++SK V    GV     +  
Sbjct: 80  AIHPGYGFLSENAEFARRCKENGIIFVGPDESVLHSLGDKVQSKLVAKKAGVQTIEGVET 139

Query: 114 N----RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP-----LDLLQSSSWNHGD 164
                   ++  + I  P ++K   GG   G+ +++K+  +             ++   D
Sbjct: 140 PIRNKNEALEIANQIGYPVMVKACAGGGGRGMRIVEKESDLLNSFVSAQNESKKAFGSDD 199

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLD 222
            + IE+Y+     +   ++ D   ++  +            K          PA  I   
Sbjct: 200 -MFIEKYIRNPKHIEVQIIADNHGNILHLYERDCSIQRRHQK-----VVEFAPAFSISDK 253

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              E+   A    + +G       +FL D      +++E+N 
Sbjct: 254 TKDELHNDAIKICKEVGYTNAGTVEFLVDEDENH-YFIEVNP 294


>gi|220907091|ref|YP_002482402.1| carbamoyl phosphate synthase large subunit [Cyanothece sp. PCC
           7425]
 gi|219863702|gb|ACL44041.1| carbamoyl-phosphate synthase, large subunit [Cyanothece sp. PCC
           7425]
          Length = 1107

 Score = 79.0 bits (194), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 63/279 (22%), Positives = 103/279 (36%), Gaps = 36/279 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVDRS------------VGLVLAHLKPDLAFN 56
           SG     AL D G++V  I         D D +            V  V+A  +PD    
Sbjct: 29  SGTQACKALRDEGYEVVLINSNPATIMTDPDTADRTYIEPLTPELVEKVIAKERPDALLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  V      +LE   +    + + A   + D+   K+V+   GV VCPS L
Sbjct: 89  TMGGQTALNLAVTLAKTGVLEKYGVELIGAKLPAIEKAEDRKLFKEVMEEIGVGVCPSGL 148

Query: 113 VN---RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
                     +Q +   P +I+P       G  +    +            +   Q+LIE
Sbjct: 149 AENMAEAKAIAQRIGVYPLIIRPAFTLGGTGGGIAYNQEEFEEIAQSGLEASPVSQILIE 208

Query: 170 QYVDG-IELTCGVMGDASLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPAK-IPLDIYKE 226
           Q + G  E    VM D + +V  I   ++ D           +S  V PA+ +    Y+ 
Sbjct: 209 QSLIGWKEYELEVMRDMADNVVIICSIENLDPMGIHT----GDSITVAPAQTLTDKEYQR 264

Query: 227 VQRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           ++  +    +AIG   G S   F  +P +  V  +E+N 
Sbjct: 265 LRDASIKIIRAIGVETGGSNIQFAVNPENGDVIVIEMNP 303



 Score = 62.1 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 33/216 (15%), Positives = 84/216 (38%), Gaps = 13/216 (6%)

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF--TMDSQHLISPPYVIKPLKGGSS 138
            +   +  ++ D+ R +Q++ +  +   P+ L   +   +     IS P V++P      
Sbjct: 694 GTSPDSIDIAEDRERFEQILRTLNIAQPPNGLARSYSEALAVARRISYPVVVRPSYVLGG 753

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKS 197
             + ++  D  +   +  +        +LI+++++  IE+    + D   +V    V + 
Sbjct: 754 RAMEIVYSDAELERYMTYAVQVEPDHPILIDKFLENAIEVDVDAIADGQGNVVIGGVME- 812

Query: 198 DFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256
             +  +    S +S   LPA+ +   +   ++  A    + +   G+   +  F     +
Sbjct: 813 --HIEQAGIHSGDSACTLPAQSLSNQVLDTIRTWAIALAKQLEVVGL--MNLQFAVQGEQ 868

Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           V+ LE N +   T     P ++   G    ++   +
Sbjct: 869 VYILEANPRASRT----VPFVSKAIGLPLAQIAARL 900


>gi|255030676|ref|ZP_05302627.1| D-alanyl-alanine synthetase A [Listeria monocytogenes LO28]
          Length = 124

 Score = 79.0 bits (194), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 43/118 (36%), Gaps = 43/118 (36%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---LAHLKPD------- 52
           +L GG S+E EVSL +  +  +AL+   F+ + I +      +   L   K D       
Sbjct: 7   LLYGGKSAEHEVSLQTAFSVINALDLEKFEAAPIYITNEGEWIQGPLLSGKLDFVEQLRF 66

Query: 53  ---------------------------------LAFNVLHGNFGEDGLVQAILELLEI 77
                                            + F +LHG  GEDG VQ + E+L I
Sbjct: 67  SATDTIKLATTESEKSEGEAISPAVLEADGQETVVFPLLHGPNGEDGTVQGLFEVLNI 124


>gi|229828830|ref|ZP_04454899.1| hypothetical protein GCWU000342_00915 [Shuttleworthia satelles DSM
           14600]
 gi|229791993|gb|EEP28107.1| hypothetical protein GCWU000342_00915 [Shuttleworthia satelles DSM
           14600]
          Length = 1071

 Score = 79.0 bits (194), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 32/225 (14%), Positives = 83/225 (36%), Gaps = 19/225 (8%)

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTMDSQHLISPPYVIKP 132
           + +P   +       + D+    +++   G+P      +   +   +  + I  P +++P
Sbjct: 651 MGVPIWGTRAEDVDAAEDRELFDEILQKTGIPRASGGTVYTAKEAKEVANRIGYPVLVRP 710

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS---LDV 189
                  G+ +   D+ I   +   +       +L+++Y+ G E+    + D     +  
Sbjct: 711 SYVLGGQGMQIAFNDEEIEDFIGIINRIAQDHPILVDKYLQGKEIEVDAICDGDNILIPG 770

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               + ++  +S        +S  V PA  I   + K+++        A+  +G+    F
Sbjct: 771 IMEHIERTGIHS-------GDSISVYPAHTISDSVKKKLEDYTERLAMALHVKGMINIQF 823

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +   +   V+ +E+N +   T     P ++   G    +L    +
Sbjct: 824 I--NIDEDVYVIEVNPRSSRT----VPYISKVTGIPIVDLATRAI 862



 Score = 65.5 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 49/286 (17%), Positives = 99/286 (34%), Gaps = 33/286 (11%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQID---------------------VDRSVGLV 45
           G ++E + +   G     +L + G +V  ++                         V  +
Sbjct: 21  GQAAEFDYA---GTQACRSLREEGVEVVLVNSNPATIMTDQEIADQVYIEPLTAEVVEQI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   KPD     L G  G +  ++      LE   +    +       + D+   K  + 
Sbjct: 78  ILKEKPDSVLPTLGGQAGLNLGMELAESGFLEKNGVRLIGTTPQTIFKAEDRQGFKDTME 137

Query: 102 SCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G P+  S +V+     +     I  P V++P       G  + K +  +   L     
Sbjct: 138 KIGEPIASSKVVHNVEDGIAFTKTIGYPVVLRPAYTLGGSGGGIAKNENELIEILTNGLR 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   ++L+E+Y+ G  E+   VM DA+ +V  I V   +       ++  +        
Sbjct: 198 LSRVHEVLVERYIGGWKEIEYEVMRDAAGNV--ITVCNMENIDPVGVHTGDSIVVAPSQT 255

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +    Y+ ++  A      IG  G     +  +P S +   +E+N 
Sbjct: 256 LSDKEYQMLRTSALRIIDEIGITGGCNVQYALNPDSFEYCVIEVNP 301


>gi|256420704|ref|YP_003121357.1| acetyl-CoA carboxylase, biotin carboxylase [Chitinophaga pinensis
           DSM 2588]
 gi|256035612|gb|ACU59156.1| acetyl-CoA carboxylase, biotin carboxylase [Chitinophaga pinensis
           DSM 2588]
          Length = 445

 Score = 79.0 bits (194), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 80/220 (36%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     I     I +            DKM +K+ + + GVPV P    
Sbjct: 77  AIHPGYGFLAENARFAEICGEHGIKFIGPTPEMIRKMGDKMTAKETMIAAGVPVIPGSEG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGDQ 165
            +            +  P ++K   GG   G+ V+ KD+ +         ++ +  + D 
Sbjct: 137 LLQSLEEAKKLSKQMGLPIILKATAGGGGKGMRVVWKDEELENAYNMAKNEARASFNNDG 196

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E++V+    +   V GD    V  ++           K             +  ++ 
Sbjct: 197 IYMEKFVEEPRHIEIQVAGDQYGKVCHLSERDCSIQRRHQK----LVEESPSPFMTPELR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +++   A  A  AI    +   +FL D   R  +++E+N 
Sbjct: 253 EKMGEAAIKAASAINYESVGTIEFLVDKH-RNFYFMEMNT 291


>gi|222080811|ref|YP_002542539.1| urea carboxylase [Agrobacterium radiobacter K84]
 gi|221725490|gb|ACM28579.1| urea carboxylase [Agrobacterium radiobacter K84]
          Length = 1135

 Score = 79.0 bits (194), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 40/256 (15%), Positives = 91/256 (35%), Gaps = 30/256 (11%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+      L    I +        A    K  ++++    GVP+ P    
Sbjct: 34  AVHPGYGFLSENIGFAERLAKEGIIFIGPTPDNIAAFGLKHTARELARESGVPLLPGSGL 93

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQL 166
           +  +   + +   I  P ++K   GG  +G+ + +  +S+          + +     ++
Sbjct: 94  LETSDDALTAATDIGYPLMLKSTAGGGGIGMQLCEDPESLKAVFDSVQRTARASFGDARV 153

Query: 167 LIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIY 224
            +E++V     +   + GD +  V  +           L+  +       PA  +   + 
Sbjct: 154 YLERFVAKARHVEVQIFGDGNGRVIALGE-----RDCSLQRRNQKVIEETPAPGLSDAVR 208

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI---FPEMAAYA 281
             +   A     +   R     +F++D    + ++LE+N +       +    P   A  
Sbjct: 209 ARLHAAAVALGTSAHYRSAGTVEFIYDRAREEFYFLEVNTR-------LQVEHPVTEAVF 261

Query: 282 GYSFRELLLWMVEDAS 297
           G    +L+ WM+  A+
Sbjct: 262 GI---DLVEWMIRQAA 274


>gi|161485749|ref|NP_664366.2| carbamoyl phosphate synthase large subunit [Streptococcus pyogenes
           MGAS315]
 gi|25452822|sp|Q8K7Y3|CARB_STRP3 RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
          Length = 1058

 Score = 79.0 bits (194), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 38/292 (13%), Positives = 100/292 (34%), Gaps = 32/292 (10%)

Query: 24  SALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH-----G---NFGEDG 66
            A++ AG++   +         D   S  L    L  +   NV+      G    FG   
Sbjct: 579 KAIQKAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIDLEQPKGVIVQFGGQT 638

Query: 67  LV---QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQ 121
            +   QA+ E   +    + +     + D+   ++ +   G+P             +++ 
Sbjct: 639 AINLAQALSE-AGVTILGTQVEDLDRAEDRDLFEKALKELGIPQPQGQTATNEEEALEAA 697

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
             I  P +++P        + +++  + +   +  +   +    +L++ Y+ G E     
Sbjct: 698 KKIGFPVLVRPSYVLGGRAMEIVENKEDLIEYIRTAVKASPEHPILVDSYIFGKECEVDA 757

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241
           + D    +    +   +       +S  +     P ++   I + +          + C 
Sbjct: 758 ISDGKSVLIPGIMEHIERAGV---HSGDSMAVYPPQQLSKQIQETIAEYTKRLAIGLNCI 814

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           G+    F+    + +V+ +E+N +   T     P ++   G    ++   ++
Sbjct: 815 GMMNVQFVI--KNEQVYVIEVNPRASRT----VPFLSKVTGIPMAQIATKLI 860



 Score = 69.4 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 50/296 (16%), Positives = 107/296 (36%), Gaps = 34/296 (11%)

Query: 25  ALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNVLHGNFG 63
           AL++ G+KV  ++        D+ +                ++   +PD     L G  G
Sbjct: 36  ALKEEGYKVILVNSNPATIMTDKEIADKVYIEPLTLEFVNRIIRKERPDAILPTLGGQTG 95

Query: 64  EDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFT 117
            +  +      IL+ LEI    + + A   + D+   KQ++     P+  S +V      
Sbjct: 96  LNMAMALSKAGILDDLEIELLGTKLSAIDQAEDRDLFKQLMQELDQPIPESTIVKTVDEA 155

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IE 176
           +     I  P +++P       G  +   ++ +          +   Q LIE+ + G  E
Sbjct: 156 VTFARDIGYPVIVRPAFTLGGTGGGICSSEEELCEITENGLKLSPVTQCLIERSIAGFKE 215

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +   VM D++ +   + V   + +     ++  +        +     + ++  +    +
Sbjct: 216 IEYEVMRDSADNA--LVVCNMENFDPVGIHTGDSIVFAPTQTLSDIENQMLRDASLKIIR 273

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           A+   G        DP S K + +E+N  P ++  S     +   GY   +L   +
Sbjct: 274 ALKIEGGCNVQLALDPYSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAKI 325


>gi|152976361|ref|YP_001375878.1| pyruvate carboxylase [Bacillus cereus subsp. cytotoxis NVH 391-98]
 gi|152025113|gb|ABS22883.1| pyruvate carboxylase [Bacillus cytotoxicus NVH 391-98]
          Length = 1148

 Score = 79.0 bits (194), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 28/221 (12%), Positives = 73/221 (33%), Gaps = 20/221 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+       E   I +         +  DK++++       +PV P    
Sbjct: 83  AIHPGYGFLSENIQFAKRCEEEGIIFIGPKSKHLDMFGDKVKARTQAQLANIPVIPGSDG 142

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSWNHGDQ 165
            +       +       P +IK   GG   G+ +++    +         ++ +    D+
Sbjct: 143 PVDSLEDVEEFATKYGYPIMIKASLGGGGRGMRIVRNHNELEDSYNRAKSEAKAAFGNDE 202

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDI 223
           + +E++V+    +   ++ D   +V  +           ++        + P   +  D+
Sbjct: 203 VYVEKFVEKPKHIEVQILADEEGNVVHLYE-----RDCSVQRRHQKVVEIAPSVSLSDDL 257

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              +   A    + +        +FL        +++E+N 
Sbjct: 258 RHRICEAAVKLTKNVNYLNAGTVEFLV--KGDDFYFIEVNP 296


>gi|332686643|ref|YP_004456417.1| carbamoyl-phosphate synthase large chain [Melissococcus plutonius
           ATCC 35311]
 gi|332370652|dbj|BAK21608.1| carbamoyl-phosphate synthase large chain [Melissococcus plutonius
           ATCC 35311]
          Length = 1061

 Score = 79.0 bits (194), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 53/301 (17%), Positives = 113/301 (37%), Gaps = 35/301 (11%)

Query: 20  KACASALEDAGFKVSQID-------VDRSVG--------------LVLAHLKPDLAFNVL 58
           +AC  AL++ G++V  ++        DR +                +L   +PD     L
Sbjct: 32  QACL-ALKEEGYEVILVNSNPATIMTDREIADKVYIEPITLEFVSQILRKEQPDALLPTL 90

Query: 59  HGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
            G  G +  ++     IL+ L+I    + + A   + D+   KQ++     P+  S +V+
Sbjct: 91  GGQTGLNMAIELASSGILDELKIELLGTKLSAIDQAEDRDLFKQLMEKLNQPIPESEIVH 150

Query: 115 --RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                +   + I  P +++P       G  +   ++ +    +     +   Q LIE+ +
Sbjct: 151 TVEEAVSFTNKIGYPVIVRPAFTLGGTGGGMCDNEEELRAITVNGLKLSPATQCLIEKSI 210

Query: 173 DG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
            G  E+   VM D+S +   I V   + +     ++  +        +    Y+ ++  +
Sbjct: 211 AGYKEIEYEVMRDSSDNA--IVVCNMENFDPVGIHTGDSIVFAPSQTLSDQEYQLLRDAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP     + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LKIIRALKIEGGCNVQLALDPSIFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 71.7 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 30/229 (13%), Positives = 78/229 (34%), Gaps = 13/229 (5%)

Query: 68  VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTMDSQHLIS 125
           + A L+   I    + +     + D+   +Q +    +P  P    +     +     I 
Sbjct: 642 LAAALDQQGIKILGTTVKDLDRAEDRDMFEQALKILEIPQPPGNTAISEAEAISIAGKIG 701

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            P +++P        + +++    +   +  +   +    +L+++Y+ G E     + D 
Sbjct: 702 YPVLLRPSYVLGGRAMEIVENQADLEDYMKYAVKASQEHPVLVDRYLVGKECEVDAICDG 761

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGIS 244
              +    +   +           +S  V P + +   I + ++         + C GI 
Sbjct: 762 QTVLIPGIMEHIERAGVHS----GDSMAVYPPQILSKKIKQTIETYTKKLALGLNCVGIM 817

Query: 245 RSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
              F+       V+ +E+N +   T     P ++   G    +L   ++
Sbjct: 818 NIQFVIHHDD--VYVIEVNPRASRT----VPFLSKITGIKMAQLATRVI 860


>gi|315080677|gb|EFT52653.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium
           acnes HL078PA1]
          Length = 1068

 Score = 79.0 bits (194), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 44/297 (14%), Positives = 106/297 (35%), Gaps = 36/297 (12%)

Query: 24  SALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLV------ 68
            A++ AG++   +         D   S  L    L  +   NV+      DG++      
Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSISDKLYFEPLTFEDVMNVVD-LEQPDGVIVQFGGQ 637

Query: 69  -----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ-- 121
                   L    +P   + +     + D+   + +++  G+P  P              
Sbjct: 638 TAINLAGPLSAAGVPILGTQVADLDRAEDREGFESLLAELGIPQAPGGTARSSEEAFAVA 697

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
             +  P +++P        + ++   + +   +  +   +    +L+++Y++G+E     
Sbjct: 698 EELGYPVLVRPSYVIGGRAMAIVTSAEELKRYMRDAVHASPDKPVLVDRYLNGLECEVDA 757

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGC 240
           + D     T++ +P    +       S +S  V P  ++   +   +  +     + +  
Sbjct: 758 ICDG----TDVLIPGIMEHIERAGVHSGDSMAVYPPQRMSQHVADRIIEVTTKLARGLKT 813

Query: 241 RGISRSDFLF--DPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +GI    F+   DP + +  V+ +E N +   T     P ++   G S  EL   ++
Sbjct: 814 KGILNIQFVVANDPATGEETVYVIEANPRASRT----VPFLSKVTGVSMAELATRII 866



 Score = 72.5 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 46/268 (17%), Positives = 99/268 (36%), Gaps = 30/268 (11%)

Query: 25  ALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNVLHGNFG 63
           AL++ G++V  ++        DR V                +L   +PD     L G  G
Sbjct: 36  ALKEEGYEVILVNSNPATIMTDRDVADKVYIEPITLEFVSSILRRERPDAIVPTLGGQTG 95

Query: 64  EDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
            +   +     IL+ L I    +   A   + D+   KQ++   G PV  S +V+     
Sbjct: 96  LNMATELAKSGILDELGIELLGTKPSAIEKAEDRDLFKQLMDELGQPVPASEVVHTVDEA 155

Query: 120 SQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IE 176
            +  + I  P +++P       G  +   +  +   + +    +   + LIEQ + G  E
Sbjct: 156 VKVGNTIGYPLIVRPAYTLGGTGGGMCCDEAELVRIVGKGLELSPVTECLIEQSIAGFKE 215

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +   +M D + +   + V   + +     ++  +        +    ++ ++  +    +
Sbjct: 216 IEYEMMRDGADNT--MVVCTMENFDPVGVHTGDSIVFAPTQTLTDVEHEMLRDASIEIVR 273

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +G  G        DP S + + +E+N 
Sbjct: 274 TLGIEGGCNVQLALDPNSFQYYVIEVNP 301


>gi|205373042|ref|ZP_03225848.1| pyruvate carboxylase [Bacillus coahuilensis m4-4]
          Length = 1095

 Score = 79.0 bits (194), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 34/243 (13%), Positives = 83/243 (34%), Gaps = 25/243 (10%)

Query: 35  QIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSM 91
            +D+   +  V    K D     +H  +G   E+       E   I +         +  
Sbjct: 11  YLDI-EDILRVAKEAKVD----AIHPGYGFLSENIQFSRRCEEEGILFIGPSSTHLDMFG 65

Query: 92  DKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147
           DK+++++      +PV P     I               P +IK   GG   G+ +++ +
Sbjct: 66  DKVKAREQAVLADIPVIPGSDGPIQQIEDVAKFGDTYGYPLIIKASLGGGGRGMRIVQSE 125

Query: 148 QSIPL----DLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSY 202
             +         ++ +    D++ +E+++ +   +   ++GD   ++             
Sbjct: 126 SDLKESYDRAKSEAKAAFGNDEVYVEKFIQNPKHIEVQILGDKEGNIV-----HLFERDC 180

Query: 203 ELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
            ++        V P   +   + +E+   A    + +        +FL      + F++E
Sbjct: 181 SVQRRHQKVVEVAPSVSLSDQLREEICHSAVKLMKNVDYINAGTVEFLV--SDNEFFFIE 238

Query: 262 INV 264
           +N 
Sbjct: 239 VNP 241


>gi|158428180|pdb|2DZD|A Chain A, Crystal Structure Of The Biotin Carboxylase Domain Of
           Pyruvate Carboxylase
 gi|158428181|pdb|2DZD|B Chain B, Crystal Structure Of The Biotin Carboxylase Domain Of
           Pyruvate Carboxylase
 gi|116174143|emb|CAL59718.1| pyruvate carboxylase [Geobacillus thermodenitrificans]
          Length = 461

 Score = 79.0 bits (194), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 28/221 (12%), Positives = 78/221 (35%), Gaps = 20/221 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+           I +         +  DK++++    + G+PV P    
Sbjct: 82  AIHPGYGFLSENIQFAKRCREEGIIFIGPNENHLDMFGDKVKARHAAVNAGIPVIPGSDG 141

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
            +      +        P +IK   GG   G+ +++    +         ++ +    D+
Sbjct: 142 PVDGLEDVVAFAEAHGYPIIIKAALGGGGRGMRIVRSKSEVKEAFERAKSEAKAAFGSDE 201

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDI 223
           + +E+ ++    +   ++GD   ++  +           ++        V P   +  ++
Sbjct: 202 VYVEKLIENPKHIEVQILGDYEGNIVHLYE-----RDCSVQRRHQKVVEVAPSVSLSDEL 256

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +   A    +++G       +FL      + +++E+N 
Sbjct: 257 RQRICEAAVQLMRSVGYVNAGTVEFLV--SGDEFYFIEVNP 295


>gi|330954108|gb|EGH54368.1| acetyl-CoA carboxylase biotin carboxylase subunit [Pseudomonas
           syringae Cit 7]
          Length = 450

 Score = 79.0 bits (194), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 79/221 (35%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+ +    +E   + +         +  DK+ +K+ +   GVP  P    
Sbjct: 77  AIHPGYGFLSENAMFAERIEQAGLTFIGPSAACIRVMGDKVAAKRAMREAGVPCVPGPDT 136

Query: 111 --ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GD 164
                 +  +     I  P ++K   GG   G+ V++++  +   +  +           
Sbjct: 137 SMPADPQSILQIARDIGYPVIVKAAGGGGGRGMRVVQEESRLLDAIALTREEARHAFGNP 196

Query: 165 QLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           +L IE+++     +   V+ DA  +   +            K             I   +
Sbjct: 197 ELYIEKFLGQPRHVEIQVLCDAYGNAVWLGSRDCSMQRRHQKVL----EEAPAPGIDAAL 252

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              V      A + IG +G+   +FLF+    + +++E+N 
Sbjct: 253 MARVGERCAQACRQIGYQGVGTFEFLFEK--DEFYFIEMNT 291


>gi|325962925|ref|YP_004240831.1| pyruvate carboxylase [Arthrobacter phenanthrenivorans Sphe3]
 gi|323469012|gb|ADX72697.1| pyruvate carboxylase [Arthrobacter phenanthrenivorans Sphe3]
          Length = 1131

 Score = 79.0 bits (194), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 43/250 (17%), Positives = 88/250 (35%), Gaps = 20/250 (8%)

Query: 28  DAGFKVS-QIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           + G  V   +DVD  V  V      D  +   +G   E+  +    +   I +       
Sbjct: 53  EEGHPVRAYLDVDE-VVRVAKESGADAIYPG-YGFLSENPDLARAAKAAGITFVGPPAEV 110

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD---SQHLISPPYVIKPLKGGSSLGIIV 143
             L+ +K+ + +     GVPV  S   ++   +   +   I  P   K + GG   G+  
Sbjct: 111 LELAGNKVAALKAARDAGVPVLKSSAPSKDLDELIAAADEIGFPIFAKAVAGGGGRGMRR 170

Query: 144 IKKDQSIPLDL-----LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD 198
           +   +++P  L        +++      L +  +    +   ++ DA  +V  +      
Sbjct: 171 VDTREALPEALQSAMREADAAFGDPTMFLEQAVLRPRHIEVQILADAQGNVMHLFERDCS 230

Query: 199 FYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS--- 254
                 K        + PA  +  +I + + R A    QA+        +FL D +    
Sbjct: 231 IQRRHQK-----VIEIAPAPNLDENIRQALYRDAVKFAQALNYVNAGTVEFLVDTVGERA 285

Query: 255 RKVFWLEINV 264
            +  ++E+N 
Sbjct: 286 GQHVFIEMNP 295


>gi|296274470|ref|YP_003657101.1| ATP-dependent carboxylate-amine ligase domain-containing protein
           [Arcobacter nitrofigilis DSM 7299]
 gi|296098644|gb|ADG94594.1| ATP-dependent carboxylate-amine ligase domain protein ATP-grasp
           [Arcobacter nitrofigilis DSM 7299]
          Length = 369

 Score = 79.0 bits (194), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 34/236 (14%), Positives = 89/236 (37%), Gaps = 22/236 (9%)

Query: 65  DGLVQAILELLEIP--YTH------SGILASAL-SMDKMRSKQVVSSCGVPVCPSILVNR 115
           D ++ +  EL  I   Y        +     AL + +KM+ K++     +         +
Sbjct: 66  DAILTSATELGNITACYVGEKLGLNTNSYECALNTTNKMKMKEIFKKHNIKTANYKYFEK 125

Query: 116 FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175
             +      + P ++KP+      G+  I K + +   + ++  ++   +L+IE+Y+ G 
Sbjct: 126 EDLIDWK--NFPCIVKPVDSSGGRGLSYISKKEDLEESIKKAFLYSKRSELIIEEYILGR 183

Query: 176 ELTCGVM-GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
           + +   +  +    +  I    ++ +  E+        H+ PAK    + +++ ++ +  
Sbjct: 184 QFSVETISSNKEHQIITI----NEEFIREVPDILELGHHI-PAKCSDSLKEKISQVTYKL 238

Query: 235 HQAIGCR-GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
                 + G    +        +++ +E+  + G     +        G S+  LL
Sbjct: 239 LDIFDLKFGAGHIELRVTDND-EIYIVELASRTGGMRSEMINLAF---GVSYSRLL 290


>gi|255730939|ref|XP_002550394.1| multifunctional urea amidolyase [Candida tropicalis MYA-3404]
 gi|240132351|gb|EER31909.1| multifunctional urea amidolyase [Candida tropicalis MYA-3404]
          Length = 1815

 Score = 79.0 bits (194), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 26/196 (13%), Positives = 71/196 (36%), Gaps = 12/196 (6%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---ISPPYVIKP 132
            I +      A      K  ++++    GVP+ P   + +   +++ +   +  P ++K 
Sbjct: 714 GIVFVGPSGDAIRKLGLKHSAREIAEKAGVPLVPGSGLVKDAKEAREIAAKLEYPVMVKS 773

Query: 133 LKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQLLIEQYVD-GIELTCGVMGDASL 187
             GG  +G+  +  ++ I         Q  S+     + +E++V+    +   ++GD   
Sbjct: 774 TAGGGGIGLQKVDSEEDIERVFQTVQHQGKSYFGDSGVFLERFVENARHVEVQMLGDGKG 833

Query: 188 DVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
               +            K             +P     +++  A     ++  +     +
Sbjct: 834 HAIAVGERDCSLQRRNQKII----EETPAPNLPEATRTKMREAAESLGASMNYKCAGTVE 889

Query: 248 FLFDPLSRKVFWLEIN 263
           +++D    + ++LE+N
Sbjct: 890 YIYDAKRDEFYFLEVN 905


>gi|229823821|ref|ZP_04449890.1| hypothetical protein GCWU000282_01124 [Catonella morbi ATCC 51271]
 gi|229786860|gb|EEP22974.1| hypothetical protein GCWU000282_01124 [Catonella morbi ATCC 51271]
          Length = 463

 Score = 79.0 bits (194), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 76/221 (34%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E     A+ E + I +            +K  ++  + + GVP+ P    
Sbjct: 77  AIHPGYGFLSERSDFVALCEEVNIKFIGPKSHIIEAMGNKQNARNTMKAAGVPITPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
            +            I  P +IK   GG   G+  ++  +      LQ+ +          
Sbjct: 137 LVHSLEEAHAIAQKIGFPLIIKAADGGGGKGMRRVEDPKDFEALFLQAQNETQSVYGNQD 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDI 223
           L IE+ +     +   ++GD    V              L+ ++       PA  +  D 
Sbjct: 197 LYIEKIIYPARHIEVQLLGDEHGHVI-----HLGERDCSLQRNNQKVIEFAPAVCLDEDT 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +   A  A  AIG       +FL    + + +++E+N 
Sbjct: 252 RQAICGAAVKAASAIGYTNAGTIEFLL-ADNGEFYFMEMNT 291


>gi|254520421|ref|ZP_05132477.1| carbamoyl-phosphate synthase [Clostridium sp. 7_2_43FAA]
 gi|226914170|gb|EEH99371.1| carbamoyl-phosphate synthase [Clostridium sp. 7_2_43FAA]
          Length = 1068

 Score = 79.0 bits (194), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 36/233 (15%), Positives = 86/233 (36%), Gaps = 16/233 (6%)

Query: 67  LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV--PVCPSILVNRFTMDSQHLI 124
            +   L+   I    +      ++ D+ +   ++   G+  P    +      ++    +
Sbjct: 644 KLANFLKEKGIKTLGTTADQIDMAEDREKFDDLLERLGIDRPKGKGVWNVEEGLEEARRL 703

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
             P +++P       G+ +   ++ +   L  +   +  + +L+++Y+ G E+    + D
Sbjct: 704 GFPVLVRPSYVLGGQGMEITHDEEELKYYLKNAFDKDKKNPILVDKYLMGREIEVDAISD 763

Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244
               +    +   +       +S  + T      I  DI  +V         AIG  G+ 
Sbjct: 764 GEEILIPGVMEHLERAGV---HSGDSVTMYPSQNISSDIKDKVLDYTKKLALAIGINGMI 820

Query: 245 RSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFP--EMAAYA--GYSFREL 288
              F+      +++ +E+N       P ++ VS  P  ++A     GY  R+L
Sbjct: 821 NIQFI--EFEGELYIIEVNPRASRTVPYISKVSKVPIVDLATKVMLGYKLRDL 871



 Score = 62.4 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 56/318 (17%), Positives = 113/318 (35%), Gaps = 45/318 (14%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQIDVD---------------------RSVGLV 45
           G ++E + S   G     AL++ G +V  ++ +                       +  V
Sbjct: 21  GQAAEFDYS---GTQACQALKEEGIEVVLVNSNPATIMTDSEVADKIYIEPLTVEFLEKV 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGL-------VQAILELLEIPYTHSGILASALSMDKMRSKQ 98
           +   +PD   ++L G  G+ GL          IL+   +    + I +     D+   + 
Sbjct: 78  IDKERPD---SLLTGMGGQTGLNLAVDLYEAGILDKYNVKVIGTSIQSIKEGEDRELFRN 134

Query: 99  VVSSCGVPVCPSILVNRFTMDS--QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
           +++    PV  S ++            I  P +++P       G  + + +  +   L  
Sbjct: 135 MMNRINEPVIQSEIITDMEAGVTYATNIGYPVIVRPAYTLGGTGGGIAENEAELREILAS 194

Query: 157 SSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215
               +   Q+L+E+ V G  E+   VM D            +      +   + +S  V 
Sbjct: 195 GLQLSTIGQVLLEKSVKGWKEIEYEVMRD---SYGNCITVCNMENIDPVGIHTGDSIVVA 251

Query: 216 PAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274
           P++ +    Y+ ++  A     A+G  G     F  +P S +   +EIN  P ++  S  
Sbjct: 252 PSQTLSDKEYQMLRTSAINIINAVGIEGGCNVQFALNPNSFEYAVIEIN--PRVSRSS-- 307

Query: 275 PEMAAYAGYSFRELLLWM 292
              +   GY   +L   +
Sbjct: 308 ALASKATGYPIAKLAAKI 325


>gi|283770264|ref|ZP_06343156.1| carbamoyl-phosphate synthase large subunit [Staphylococcus aureus
           subsp. aureus H19]
 gi|283460411|gb|EFC07501.1| carbamoyl-phosphate synthase large subunit [Staphylococcus aureus
           subsp. aureus H19]
          Length = 1057

 Score = 79.0 bits (194), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 52/315 (16%), Positives = 120/315 (38%), Gaps = 39/315 (12%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQID---------------------VDRSVGLV 45
           G ++E + +   G     AL++ G++V  ++                         +  +
Sbjct: 21  GQAAEFDYA---GTQACLALKEEGYRVILVNSNPATIMTDKEIADKVYIEPLTHDFIARI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   +PD     L G  G +  +Q     +L+   +    + + +   + D+   + +++
Sbjct: 78  IRKEQPDALLPTLGGQTGLNMAIQLHESGVLQDNNVQLLGTELTSIQQAEDREMFRTLMN 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
              VPV  S +VN        +  +  P +++P       G  +   D+ +   +     
Sbjct: 138 DLNVPVPESDIVNTVEQAFKFKEQVGYPLIVRPAFTMGGTGGGICHNDEELHEIVSNGLH 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
           ++   Q L+E+ + G  E+   VM D + +   I V   +     +   + +S  V P++
Sbjct: 198 YSPATQCLLEKSIAGFKEIEYEVMRDKNDNA--IVVCNMENID-PVGIHTGDSIVVAPSQ 254

Query: 219 -IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
            +    Y+ ++ ++    +A+G  G        DP S   + +E+N  P ++  S     
Sbjct: 255 TLSDVEYQMLRDVSLKVIRALGIEGGCNVQLALDPHSFDYYIIEVN--PRVSRSS--ALA 310

Query: 278 AAYAGYSFRELLLWM 292
           +   GY   +L   +
Sbjct: 311 SKATGYPIAKLAAKI 325



 Score = 72.8 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 26/210 (12%), Positives = 71/210 (33%), Gaps = 14/210 (6%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPL 133
            +    + +     + D+   + ++    VP             + +   I  P V++P 
Sbjct: 650 GVKILGTSLENLNRAEDRKEFEALLRKINVPQPQGKTATSPEEALANAAEIGYPVVVRPS 709

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
                  + ++  D+ +   + Q+   +    +L+++Y+ G E+    + D    +    
Sbjct: 710 YVLGGRAMEIVDNDKELENYMTQAVKASPEHPVLVDRYLTGKEIEVDAICDGETVIIPGI 769

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
           +   +           +S  V P + +  D    ++       + +   G+    F+   
Sbjct: 770 MEHIERAGVHS----GDSIAVYPPQTLTEDELATLEDYTIKLAKGLNIIGLINIQFVIAH 825

Query: 253 LSRKVFWLEIN-----VQPGMTPVSIFPEM 277
               V+ LE+N       P ++ ++  P  
Sbjct: 826 DG--VYVLEVNPRSSRTVPFLSKITDIPMA 853


>gi|224476229|ref|YP_002633835.1| pyruvate carboxylase [Staphylococcus carnosus subsp. carnosus
           TM300]
 gi|222420836|emb|CAL27650.1| pyruvate carboxylase [Staphylococcus carnosus subsp. carnosus
           TM300]
          Length = 1149

 Score = 79.0 bits (194), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 31/221 (14%), Positives = 74/221 (33%), Gaps = 20/221 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+           I +    +    +  DK++++       +PV P    
Sbjct: 80  AIHPGYGFLSENETFARRCAEEGIIFIGPELKHLDMFGDKVKARATAIKADLPVIPGTDG 139

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
            I       +       P +IK   GG   G+ ++  +  +     ++ S         +
Sbjct: 140 PIEDYHKAAEFAEEAGYPLMIKATSGGGGKGMRIVNSEGELEEAFSRAKSEAEKSFGNSE 199

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDI 223
           + IE+Y+ +   +   +MGD+  ++  +           ++        V P   +   +
Sbjct: 200 VYIEKYINEPKHIEVQIMGDSEGNIVHLYE-----RDCSVQRRHQKVVEVAPSVGLDESL 254

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +   A      +G       +FL        +++E+N 
Sbjct: 255 RERICDAALQLMNNVGYVNAGTVEFLV--SGDDFYFIEVNP 293


>gi|21282815|ref|NP_645903.1| carbamoyl phosphate synthase large subunit [Staphylococcus aureus
           subsp. aureus MW2]
 gi|300912233|ref|ZP_07129676.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus
           subsp. aureus TCH70]
 gi|22095489|sp|P58940|CARB_STAAW RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|21204253|dbj|BAB94951.1| carbamoyl-phosphate synthase large chain [Staphylococcus aureus
           subsp. aureus MW2]
 gi|300886479|gb|EFK81681.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus
           subsp. aureus TCH70]
          Length = 1057

 Score = 79.0 bits (194), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 52/315 (16%), Positives = 120/315 (38%), Gaps = 39/315 (12%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQID---------------------VDRSVGLV 45
           G ++E + +   G     AL++ G++V  ++                         +  +
Sbjct: 21  GQAAEFDYA---GTQACLALKEEGYRVILVNSNPATIMTDKEIADKVYIEPLTHDFIARI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   +PD     L G  G +  +Q     +L+   +    + + +   + D+   + +++
Sbjct: 78  IRKEQPDALLPTLGGQTGLNMAIQLHESGVLQDNNVQLLGTELTSIQQAEDREMFRTLMN 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
              VPV  S +VN        +  +  P +++P       G  +   D+ +   +     
Sbjct: 138 DLNVPVPESDIVNTVEQAFKFKEQVGYPLIVRPAFTMGGTGGGICHNDEELHEIVSNGLH 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
           ++   Q L+E+ + G  E+   VM D + +   I V   +     +   + +S  V P++
Sbjct: 198 YSPATQCLLEKSIAGFKEIEYEVMRDKNDNA--IVVCNMENID-PVGIHTGDSIVVAPSQ 254

Query: 219 -IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
            +    Y+ ++ ++    +A+G  G        DP S   + +E+N  P ++  S     
Sbjct: 255 TLSDVEYQMLRDVSLKVIRALGIEGGCNVQLALDPHSFDYYIIEVN--PRVSRSS--ALA 310

Query: 278 AAYAGYSFRELLLWM 292
           +   GY   +L   +
Sbjct: 311 SKATGYPIAKLAAKI 325



 Score = 60.5 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 27/210 (12%), Positives = 71/210 (33%), Gaps = 14/210 (6%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPL 133
            +    + +     + D+   + ++    VP             + +   I  P V++P 
Sbjct: 650 GVKILGTSLENLNRAEDRKEFEALLRKINVPQPQGKTATSPEEALANAAEIGYPVVVRPS 709

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
                  + ++  D+ +   + Q+   +    +L+++Y+ G E+    + D    +    
Sbjct: 710 YVLGGRAMEIVDNDKELENYMTQAVKASPEHPVLVDRYLTGKEIEVDAICDGETVIIPGI 769

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
           +   +           +S  V P + +  D    ++       + I   G+    F+   
Sbjct: 770 MEHIERAGVHS----GDSIAVYPPQTLTEDELATLEDYTIKLAKGINIIGLINIQFVIAH 825

Query: 253 LSRKVFWLEIN-----VQPGMTPVSIFPEM 277
               V+ LE+N       P ++ ++  P  
Sbjct: 826 DG--VYVLEVNPRSSRTVPFLSKITDIPMA 853


>gi|299138701|ref|ZP_07031879.1| acetyl-CoA carboxylase, biotin carboxylase [Acidobacterium sp.
           MP5ACTX8]
 gi|298599337|gb|EFI55497.1| acetyl-CoA carboxylase, biotin carboxylase [Acidobacterium sp.
           MP5ACTX8]
          Length = 457

 Score = 79.0 bits (194), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 32/221 (14%), Positives = 84/221 (38%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     +     I +       + +  +K  ++Q +    VP+ P    
Sbjct: 77  AVHPGYGLLSENANFAEVCRASNIKFIGPPPEVTRMMGEKSTARQTMKKAKVPILPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS-----SWNHGD 164
            +      ++    +  P ++K + GG   G+ + +  + +P    Q+S     ++    
Sbjct: 137 IVATEGEALEWAQSVKYPVILKAVAGGGGRGMRICRSKEELPALYQQASTEALNAFG-NG 195

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           +L +E++++    +   V+ D   +V  +   +        K            +I    
Sbjct: 196 ELYMEKFIERPRHIEFQVLADEHGNVMSLGERECSIQRRHQK----LIEEAPSLQITPKQ 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +E+ ++   + + IG       +FL D    +++++E+N 
Sbjct: 252 REEMGKVIKRSLKDIGYWNAGTIEFLMDE-DGQIYFIEMNT 291


>gi|294650413|ref|ZP_06727775.1| methylcrotonoyl-CoA carboxylase alpha subunit [Acinetobacter
           haemolyticus ATCC 19194]
 gi|292823684|gb|EFF82525.1| methylcrotonoyl-CoA carboxylase alpha subunit [Acinetobacter
           haemolyticus ATCC 19194]
          Length = 666

 Score = 79.0 bits (194), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 79/221 (35%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       +   I +    + A      K  SK ++   GVP+ P    
Sbjct: 80  AIHPGYGFLSENDQFALACQQHNICFIGPPVDAILAMGLKATSKALMEKAGVPLTPGYHG 139

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
                +        I  P +IK   GG   G+ ++++ +     L     ++ S    D 
Sbjct: 140 TNQDAEFLKQQADRIGYPVLIKASAGGGGKGMSLVERSEDFLHSLASCKREAKSSFGNDD 199

Query: 166 LLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDI 223
           +LIE+Y +    +   V GD   +               ++          PA ++P + 
Sbjct: 200 VLIERYVIQPRHIEVQVFGDTHGNYV-----HLFERDCSVQRRHQKVLEEAPAPQMPSEK 254

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              +++ A  A +A+   G    +F+        +++E+N 
Sbjct: 255 LDAMRQAAIDAARAVDYVGAGTVEFIV-EQDGTAYFMEMNT 294


>gi|253731820|ref|ZP_04865985.1| carbamoyl phosphate synthase large subunit [Staphylococcus aureus
           subsp. aureus USA300_TCH959]
 gi|253724419|gb|EES93148.1| carbamoyl phosphate synthase large subunit [Staphylococcus aureus
           subsp. aureus USA300_TCH959]
          Length = 1057

 Score = 79.0 bits (194), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 52/315 (16%), Positives = 120/315 (38%), Gaps = 39/315 (12%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQID---------------------VDRSVGLV 45
           G ++E + +   G     AL++ G++V  ++                         +  +
Sbjct: 21  GQAAEFDYA---GTQACLALKEEGYRVILVNSNPATIMTDKEIADKVYIEPLTHDFIARI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   +PD     L G  G +  +Q     +L+   +    + + +   + D+   + +++
Sbjct: 78  IRKEQPDALLPTLGGQTGLNMAIQLHESGVLQDNNVQLLGTELTSIQQAEDREMFRTLMN 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
              VPV  S +VN        +  +  P +++P       G  +   D+ +   +     
Sbjct: 138 DLNVPVPESDIVNTVEQAFKFKEQVGYPLIVRPAFTMGGTGGGICHNDEELHEIVSNGLH 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
           ++   Q L+E+ + G  E+   VM D + +   I V   +     +   + +S  V P++
Sbjct: 198 YSPATQCLLEKSIAGFKEIEYEVMRDKNDNA--IVVCNMENID-PVGIHTGDSIVVAPSQ 254

Query: 219 -IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
            +    Y+ ++ ++    +A+G  G        DP S   + +E+N  P ++  S     
Sbjct: 255 TLSDVEYQMLRDVSLKVIRALGIEGGCNVQLALDPHSFDYYIIEVN--PRVSRSS--ALA 310

Query: 278 AAYAGYSFRELLLWM 292
           +   GY   +L   +
Sbjct: 311 SKATGYPIAKLAAKI 325



 Score = 72.8 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 26/210 (12%), Positives = 71/210 (33%), Gaps = 14/210 (6%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPL 133
            +    + +     + D+   + ++    VP             + +   I  P V++P 
Sbjct: 650 GVKILGTSLENLNRAEDRKEFEALLRKINVPQPQGKTATSPEEALANAAEIGYPVVVRPS 709

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
                  + ++  D+ +   + Q+   +    +L+++Y+ G E+    + D    +    
Sbjct: 710 YVLGGRAMEIVDNDKELENYMTQAVKASPEHPVLVDRYLTGKEIEVDAICDGETVIIPGI 769

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
           +   +           +S  V P + +  D    ++       + +   G+    F+   
Sbjct: 770 MEHIERAGVHS----GDSIAVYPPQTLTEDELATLEDYTIKLAKGLNIIGLINIQFVIAH 825

Query: 253 LSRKVFWLEIN-----VQPGMTPVSIFPEM 277
               V+ LE+N       P ++ ++  P  
Sbjct: 826 DG--VYVLEVNPRSSRTVPFLSKITDIPMA 853


>gi|167039321|ref|YP_001662306.1| carbamoyl-phosphate synthase, large subunit [Thermoanaerobacter sp.
           X514]
 gi|300913961|ref|ZP_07131278.1| carbamoyl-phosphate synthase, large subunit [Thermoanaerobacter sp.
           X561]
 gi|307725354|ref|YP_003905105.1| carbamoyl-phosphate synthase large subunit [Thermoanaerobacter sp.
           X513]
 gi|226700942|sp|B0K4D7|CARB_THEPX RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|166853561|gb|ABY91970.1| carbamoyl-phosphate synthase, large subunit [Thermoanaerobacter sp.
           X514]
 gi|300890646|gb|EFK85791.1| carbamoyl-phosphate synthase, large subunit [Thermoanaerobacter sp.
           X561]
 gi|307582415|gb|ADN55814.1| carbamoyl-phosphate synthase, large subunit [Thermoanaerobacter sp.
           X513]
          Length = 1072

 Score = 79.0 bits (194), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 51/286 (17%), Positives = 103/286 (36%), Gaps = 33/286 (11%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI---------DVDRS------------VGLV 45
           G ++E + S   G     +L++ G +V  +         D D +            V  +
Sbjct: 21  GQAAEFDYS---GTQACKSLKEEGLQVVLVNNNPATIMTDTDIADIVYIENPTVCVVEKI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +A  KPD     L G  G +  V    + IL+   +    +   +   + D+   K+ + 
Sbjct: 78  IAKEKPDGILATLGGQTGLNLAVKLKEEGILDKYNVKLLGTSFESIKTAEDRKLFKRKMQ 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G PV  S+ V      +        P +I+P       G  +   D+ +   +     
Sbjct: 138 EIGEPVAESVTVTNIEDALKFAKNYGYPLIIRPAYTLGGTGGGIAHNDEELISIVSLGLK 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   ++L+E+ + G  E+   VM DA  +   I     + +     ++  +        
Sbjct: 198 KSMVGEVLVEKSLYGWKEIEFEVMRDADDNCITIC--SMENFDPVGVHTGDSIVVAPTQT 255

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +    Y+ ++  +    +A+   G     F  DP S K + +E+N 
Sbjct: 256 LSDYEYQMLRSASIKIIKALKIEGGCNIQFALDPESHKYYVIEVNP 301



 Score = 72.5 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 31/216 (14%), Positives = 75/216 (34%), Gaps = 13/216 (6%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--SILVNRFTMDSQHLISPPYVIKPL 133
            +    +   +  +S D+ +  +++    +        L      D    +S P +++P 
Sbjct: 650 GVKILGTSYESIDISEDREKFSKLLKELNINQPKGDYALTVEDAKDIALKLSFPLLVRPS 709

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
                  +  +   Q +   +  ++  + G  +LI++Y+DG E+    + D    +    
Sbjct: 710 YVIGGQSMEKVNTLQELIDYVKHATEISPGKPILIDKYIDGREVEIDAVSDGECVLIPGI 769

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
           +   +           +S  + PA+ +       +        +A+  +G+    F    
Sbjct: 770 MEHIERAGVHS----GDSFSIYPARNLSEREINTIIEYTERISKALNVKGLINIQFAVKE 825

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
               V+ LE+N +   T     P M+   G    +L
Sbjct: 826 --GTVYVLEVNPRASRT----VPIMSKATGVPMVKL 855


>gi|74317573|ref|YP_315313.1| pyruvate carboxylase subunit A [Thiobacillus denitrificans ATCC
           25259]
 gi|74057068|gb|AAZ97508.1| acetyl-CoA carboxylase, biotin carboxylase [Thiobacillus
           denitrificans ATCC 25259]
          Length = 472

 Score = 79.0 bits (194), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 82/221 (37%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            LH  +G   E+  +  I     I +            DK++++  + + G+PV P    
Sbjct: 76  ALHPGYGFLSENPDLATICARRGIRFIGPSPDVIRRMGDKIQARNAMLAAGIPVVPGSDH 135

Query: 114 NRFTMDSQHLI----SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
           N  ++D    +      P ++K   GG   GI     +  +  +      ++S      +
Sbjct: 136 NLESVDEARALANQIGYPVMLKATNGGGGRGIRRCDSEDELLKNYDRVVSEASKAFGKPE 195

Query: 166 LLIEQ-YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDI 223
           + +E+  V    +   ++GD   ++  +            K        + P  ++    
Sbjct: 196 VFVEKCVVHPKHIEVQILGDTQGNIIHLFERDCSIQRRNQKL-----IEIAPSPQLTEAQ 250

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + + +LA  A +A+G       +FL D    + +++E+N 
Sbjct: 251 RQYIGKLAVRAAKAVGYVNAGTVEFLLD-QDNQFYFMEMNT 290


>gi|294616600|ref|ZP_06696376.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecium
           E1636]
 gi|294617884|ref|ZP_06697493.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecium
           E1679]
 gi|291590550|gb|EFF22283.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecium
           E1636]
 gi|291595829|gb|EFF27113.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecium
           E1679]
          Length = 1061

 Score = 79.0 bits (194), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 57/301 (18%), Positives = 115/301 (38%), Gaps = 35/301 (11%)

Query: 20  KACASALEDAGFKVSQID-------VDRSVGLV--------------LAHLKPDLAFNVL 58
           +AC S L++ G++V  ++        D+ V                 L   +PD     L
Sbjct: 32  QACLS-LKEEGYEVVLVNSNPATIMTDKEVADQVYIEPITLEFVSRILRKERPDALLPTL 90

Query: 59  HGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
            G  G +  ++     ILE L I    + + A   + D+   KQ++     P+  S +VN
Sbjct: 91  GGQTGLNMAMELAASGILEELNIELLGTKLSAIDQAEDRDLFKQLMKELNQPIPESEIVN 150

Query: 115 --RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                +D  + I  P +++P       G  + + ++ + +      S +   Q LIE+ +
Sbjct: 151 TVEEAVDFANKIGYPVIVRPAFTLGGTGGGMCENEEELRIVSENGLSLSPATQCLIERSI 210

Query: 173 DG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
            G  E+   VM D++ +   I V   + +     ++  +        +    Y+ ++  +
Sbjct: 211 AGFKEIEYEVMRDSADNA--IVVCNMENFDPVGIHTGDSIVFAPSQTLSDHEYQMLRDAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S   + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LSIIRALKIEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 26/225 (11%), Positives = 75/225 (33%), Gaps = 13/225 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC--PSILVNRFTMDSQHLISPPYV 129
           L    +    + I     + ++   +Q +    +P     +       +     I  P +
Sbjct: 646 LTAAGVKILGTTIEDLDRAENRDLFEQALKELDIPQPLGDTATSKEEAVVIASRIGYPVL 705

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           ++P        + +++  + +   +  +   +    +L+++Y+ G E     + D    +
Sbjct: 706 VRPSYVLGGRAMEIVENQRDLEDYMEHAVKASPEHPVLVDRYLLGGECEVDAICDGETVL 765

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               +   +           +S  V P + +   I K ++         + C G+    F
Sbjct: 766 IPGIMEHIERAGVHS----GDSMAVYPPQTLSESIKKTIEDYTIRLALGLNCVGMMNIQF 821

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +      +V+ +E+N +   T     P ++   G    ++    +
Sbjct: 822 VIHE--NEVYVIEVNPRASRT----VPFLSKVTGIPMAQIATKAI 860


>gi|302383313|ref|YP_003819136.1| acetyl-CoA carboxylase [Brevundimonas subvibrioides ATCC 15264]
 gi|302193941|gb|ADL01513.1| acetyl-CoA carboxylase, biotin carboxylase [Brevundimonas
           subvibrioides ATCC 15264]
          Length = 450

 Score = 79.0 bits (194), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 80/220 (36%), Gaps = 18/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     I+E   + +         +  DK+ +KQ V   G+P  P    
Sbjct: 77  AIHPGYGFLSENARFAEIVEAHGMTFIGPRPEHIRIMGDKITAKQTVLEAGIPCVPGSPG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
            +      + +   I  P ++K   GG   G+ V      +   +     ++ +      
Sbjct: 137 EVETVEDAIAASKSIGFPLIVKASAGGGGRGMKVALTADDLVEAVQTAQSEALAAFGNGA 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+Y+     +   V+ D+  +V  +        S + ++  +      PA +     
Sbjct: 197 VYMERYLQKPRHIEIQVIADSHGNVVHLGERD---CSLQRRHQKVLEEAPSPA-LSAAER 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +      A   IG  G+   +FL+     + F++E+N 
Sbjct: 253 VAIGETVNKAIAKIGYLGVGTIEFLW--EDGEFFFIEMNT 290


>gi|261207809|ref|ZP_05922494.1| carbamoyl-phosphate synthase [Enterococcus faecium TC 6]
 gi|289566261|ref|ZP_06446693.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecium
           D344SRF]
 gi|260078192|gb|EEW65898.1| carbamoyl-phosphate synthase [Enterococcus faecium TC 6]
 gi|289161968|gb|EFD09836.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecium
           D344SRF]
          Length = 1061

 Score = 79.0 bits (194), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 57/301 (18%), Positives = 115/301 (38%), Gaps = 35/301 (11%)

Query: 20  KACASALEDAGFKVSQID-------VDRSVGLV--------------LAHLKPDLAFNVL 58
           +AC S L++ G++V  ++        D+ V                 L   +PD     L
Sbjct: 32  QACLS-LKEEGYEVVLVNSNPATIMTDKEVADQVYIEPITLEFVSRILRKERPDALLPTL 90

Query: 59  HGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
            G  G +  ++     ILE L I    + + A   + D+   KQ++     P+  S +VN
Sbjct: 91  GGQTGLNMAMELAASGILEELNIELLGTKLSAIDQAEDRDLFKQLMKELNQPIPESEIVN 150

Query: 115 --RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                +D  + I  P +++P       G  + + ++ + +      S +   Q LIE+ +
Sbjct: 151 TVEEAVDFANKIGYPVIVRPAFTLGGTGGGMCENEEELRIVSENGLSLSPATQCLIERSI 210

Query: 173 DG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
            G  E+   VM D++ +   I V   + +     ++  +        +    Y+ ++  +
Sbjct: 211 AGFKEIEYEVMRDSADNA--IVVCNMENFDPVGIHTGDSIVFAPSQTLSDHEYQMLRDAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S   + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LSIIRALKIEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 67.5 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 26/225 (11%), Positives = 75/225 (33%), Gaps = 13/225 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC--PSILVNRFTMDSQHLISPPYV 129
           L    +    + I     + ++   +Q +    +P     +       +     I  P +
Sbjct: 646 LTAAGVKILGTTIEDLDRAENRDLFEQALKELDIPQPLGDTATSKEEAVIIASRIGYPVL 705

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           ++P        + +++  + +   +  +   +    +L+++Y+ G E     + D    +
Sbjct: 706 VRPSYVLGGRAMEIVENQRDLEDYMEHAVKASPEHPVLVDRYLLGGECEVDAICDGETVL 765

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               +   +           +S  V P + +   I K ++         + C G+    F
Sbjct: 766 IPGIMEHIERAGVHS----GDSMAVYPPQTLSESIKKTIEDYTIRLALGLNCVGMMNIQF 821

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +      +V+ +E+N +   T     P ++   G    ++    +
Sbjct: 822 VIHE--NEVYVIEVNPRASRT----VPFLSKVTGIPMAQIATKAI 860


>gi|149244854|ref|XP_001526970.1| urea amidolyase [Lodderomyces elongisporus NRRL YB-4239]
 gi|146449364|gb|EDK43620.1| urea amidolyase [Lodderomyces elongisporus NRRL YB-4239]
          Length = 1859

 Score = 79.0 bits (194), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 32/238 (13%), Positives = 86/238 (36%), Gaps = 14/238 (5%)

Query: 34  SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDK 93
           + ID+D+ +         +      +G   E+           I +      A      K
Sbjct: 716 TYIDIDKVIKAA-KDTGAEAIIPG-YGFLSENADFSDRCGKEGIVFVGPSGDAIRKLGLK 773

Query: 94  MRSKQVVSSCGVPVCPS---ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150
             ++++  + GVP+ P    +  ++   +    +  P ++K   GG  +G+  +  ++ I
Sbjct: 774 HSAREIAEAAGVPLVPGSGLVKDSKEAKEIAAKLEYPVMVKSTAGGGGIGLQKVDSEKDI 833

Query: 151 PLDLL----QSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205
                    Q  S+     + +E++V+    +   ++GD   +   +            K
Sbjct: 834 ERVFQTVQHQGLSYFGDSGVFLERFVENARHVEIQMLGDGYGNAIAVGERDCSLQRRNQK 893

Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
                        +P    +++++ A     ++  +     ++++DP   + ++LE+N
Sbjct: 894 II----EETPAPDLPEATRQKMRKAAESLGASMKYKCAGTVEYIYDPKRDEFYFLEVN 947


>gi|167036658|ref|YP_001664236.1| carbamoyl-phosphate synthase, large subunit [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|320115085|ref|YP_004185244.1| carbamoyl-phosphate synthase large subunit [Thermoanaerobacter
           brockii subsp. finnii Ako-1]
 gi|226700941|sp|B0KBW4|CARB_THEP3 RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|166855492|gb|ABY93900.1| carbamoyl-phosphate synthase, large subunit [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|319928176|gb|ADV78861.1| carbamoyl-phosphate synthase, large subunit [Thermoanaerobacter
           brockii subsp. finnii Ako-1]
          Length = 1072

 Score = 79.0 bits (194), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 49/286 (17%), Positives = 103/286 (36%), Gaps = 33/286 (11%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI---------DVD------------RSVGLV 45
           G ++E + S   G     +L++ G +V  +         D D              V  +
Sbjct: 21  GQAAEFDYS---GTQACKSLKEEGVQVVLVNNNPATIMTDTDIADIVYIENPTVSVVEKI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +A  +P+     L G  G +  V    + IL+   +    +   +   + D+   K+ + 
Sbjct: 78  IAKERPEGILATLGGQTGLNLAVKLKEEGILDKYNVKLLGTSFESIKTAEDRELFKRKMQ 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G PV  S+ V      +        P +I+P       G  +   D+ +   +     
Sbjct: 138 EIGEPVAESVTVTNIEDALKFAKNYGYPLIIRPAYTLGGTGGGIAHNDEELISIVDLGLK 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   ++L+E+ + G  E+   VM DA+ +   I     + +     ++  +        
Sbjct: 198 KSMVGEVLVEKSLYGWKEIEFEVMRDAADNCITIC--SMENFDPVGVHTGDSIVVAPTQT 255

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +    Y+ ++  +    +A+   G     F  DP S K + +E+N 
Sbjct: 256 LSDYEYQMLRSASIKIIKALKIEGGCNIQFALDPKSHKYYVIEVNP 301



 Score = 71.3 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 32/215 (14%), Positives = 74/215 (34%), Gaps = 13/215 (6%)

Query: 77  IPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--SILVNRFTMDSQHLISPPYVIKPLK 134
           +    +   +  +S D+ +  +++    +        L      D    +  P +I+P  
Sbjct: 651 VKILGTSYESIDISEDREKFSKLLRELNINQPKGDYALTVEDAKDIALKLGFPLLIRPSY 710

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194
                 +  +   Q I   +  ++  + G  +LI++Y+DG E+    + D    +    +
Sbjct: 711 VIGGQSMEKVNTLQEIIDYVSNATQVSPGRPILIDKYIDGREVEVDAVSDGECVLIPGIM 770

Query: 195 PKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
              +           +S  + PA+ +       +        +A+  +G+    F     
Sbjct: 771 EHIERAGVHS----GDSFSIYPARNLSEREINTIIEYTERISKALNVKGLINIQFAVKE- 825

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
              V+ LE+N +   T     P M+   G    +L
Sbjct: 826 -GTVYVLEVNPRASRT----VPIMSKATGVPMVKL 855


>gi|323442294|gb|EGA99924.1| carbamoyl phosphate synthase large subunit [Staphylococcus aureus
           O46]
          Length = 1057

 Score = 79.0 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 52/315 (16%), Positives = 120/315 (38%), Gaps = 39/315 (12%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQID---------------------VDRSVGLV 45
           G ++E + +   G     AL++ G++V  ++                         +  +
Sbjct: 21  GQAAEFDYA---GTQACLALKEEGYRVILVNSNPATIMTDKEIADKVYIEPLTHDFIARI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   +PD     L G  G +  +Q     +L+   +    + + +   + D+   + +++
Sbjct: 78  IRKEQPDALLPTLGGQTGLNMAIQLHESGVLQDNNVQLLGTELTSIQQAEDREMFRTLMN 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
              VPV  S +VN        +  +  P +++P       G  +   D+ +   +     
Sbjct: 138 DLNVPVPESDIVNTVEQAFKFKEQVGYPLIVRPAFTMGGTGGGICHNDEELHEIVSNGLH 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
           ++   Q L+E+ + G  E+   VM D + +   I V   +     +   + +S  V P++
Sbjct: 198 YSPATQCLLEKSIAGFKEIEYEVMRDKNDNA--IVVCNMENID-PVGIHTGDSIVVAPSQ 254

Query: 219 -IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
            +    Y+ ++ ++    +A+G  G        DP S   + +E+N  P ++  S     
Sbjct: 255 TLSDVEYQMLRDVSLKVIRALGIEGGCNVQLALDPHSFDYYIIEVN--PRVSRSS--ALA 310

Query: 278 AAYAGYSFRELLLWM 292
           +   GY   +L   +
Sbjct: 311 SKATGYPIAKLAAKI 325



 Score = 72.8 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 26/210 (12%), Positives = 71/210 (33%), Gaps = 14/210 (6%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPL 133
            +    + +     + D+   + ++    VP             + +   I  P V++P 
Sbjct: 650 GVKILGTSLENLNRAEDRKEFEALLRKINVPQPQGKTATSPEEALANAAEIGYPVVVRPS 709

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
                  + ++  D+ +   + Q+   +    +L+++Y+ G E+    + D    +    
Sbjct: 710 YVLGGRAMEIVDNDKELENYMTQAVKASPEHPVLVDRYLTGKEIEVDAICDGETVIIPGI 769

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
           +   +           +S  V P + +  D    ++       + +   G+    F+   
Sbjct: 770 MEHIERAGVHS----GDSIAVYPPQTLTEDELATLEDYTIKLAKGLNIIGLINIQFVIAH 825

Query: 253 LSRKVFWLEIN-----VQPGMTPVSIFPEM 277
               V+ LE+N       P ++ ++  P  
Sbjct: 826 DG--VYVLEVNPRSSRTVPFLSKITDIPMA 853


>gi|313203018|ref|YP_004041675.1| carbamoyL-phosphate synthase l chain ATP-binding protein
           [Paludibacter propionicigenes WB4]
 gi|312442334|gb|ADQ78690.1| Carbamoyl-phosphate synthase L chain ATP-binding protein
           [Paludibacter propionicigenes WB4]
          Length = 498

 Score = 79.0 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 46/258 (17%), Positives = 93/258 (36%), Gaps = 16/258 (6%)

Query: 16  LSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELL 75
           L+       A +    K   +D +R V L L H   DL     +G   E+     +    
Sbjct: 42  LNYADEIIPARDAGNDKPIFLDPERIVNLALEH-NIDLIHPG-YGFLSENPDFAQLCVDN 99

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIK 131
            I +             K  +K +    G+P+ P     +            I  P ++K
Sbjct: 100 GINFIGPSPQLIRDMGLKTVAKSMAIKSGLPLVPGSDGPVTDAHAAKAFADKIGYPVILK 159

Query: 132 PLKGGSSLGIIVIKKDQ----SIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDAS 186
              GG   G+ +++K +    +      ++ +      + IE+Y+ +   L   +MGD  
Sbjct: 160 ASAGGGGRGMRIVEKPETIERNFKSASDEALAAFGNGDMFIEKYLQNPKHLEFQIMGDKH 219

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRS 246
            +V  +   +    S + K+  +       A +   + KE+  +A    ++IG       
Sbjct: 220 GNVVHLGERE---CSLQRKHQKIL-EEAPSASVTPAMRKEMGDMAVRFAKSIGYYSAGTI 275

Query: 247 DFLFDPLSRKVFWLEINV 264
           +F+ D      +++E+N 
Sbjct: 276 EFIMDE-DGSYYFMEMNT 292


>gi|258423754|ref|ZP_05686640.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus
           A9635]
 gi|282916452|ref|ZP_06324214.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus
           subsp. aureus D139]
 gi|257845986|gb|EEV70014.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus
           A9635]
 gi|282319892|gb|EFB50240.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus
           subsp. aureus D139]
 gi|298694496|gb|ADI97718.1| carbamoyl-phosphate synthase small chain [Staphylococcus aureus
           subsp. aureus ED133]
 gi|323440977|gb|EGA98684.1| carbamoyl phosphate synthase large subunit [Staphylococcus aureus
           O11]
          Length = 1057

 Score = 79.0 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 52/315 (16%), Positives = 120/315 (38%), Gaps = 39/315 (12%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQID---------------------VDRSVGLV 45
           G ++E + +   G     AL++ G++V  ++                         +  +
Sbjct: 21  GQAAEFDYA---GTQACLALKEEGYRVILVNSNPATIMTDKEIADKVYIEPLTHDFIARI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   +PD     L G  G +  +Q     +L+   +    + + +   + D+   + +++
Sbjct: 78  IRKEQPDALLPTLGGQTGLNMAIQLHESGVLQDNNVQLLGTELTSIQQAEDREMFRTLMN 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
              VPV  S +VN        +  +  P +++P       G  +   D+ +   +     
Sbjct: 138 DLNVPVPESDIVNTVEQAFKFKEQVGYPLIVRPAFTMGGTGGGICHNDEELHEIVSNGLH 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
           ++   Q L+E+ + G  E+   VM D + +   I V   +     +   + +S  V P++
Sbjct: 198 YSPATQCLLEKSIAGFKEIEYEVMRDKNDNA--IVVCNMENID-PVGIHTGDSIVVAPSQ 254

Query: 219 -IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
            +    Y+ ++ ++    +A+G  G        DP S   + +E+N  P ++  S     
Sbjct: 255 TLSDVEYQMLRDVSLKVIRALGIEGGCNVQLALDPHSFDYYIIEVN--PRVSRSS--ALA 310

Query: 278 AAYAGYSFRELLLWM 292
           +   GY   +L   +
Sbjct: 311 SKATGYPIAKLAAKI 325



 Score = 72.8 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 26/210 (12%), Positives = 71/210 (33%), Gaps = 14/210 (6%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPL 133
            +    + +     + D+   + ++    VP             + +   I  P V++P 
Sbjct: 650 GVKILGTSLENLNRAEDRKEFEALLRKINVPQPQGKTATSPEEALANAAEIGYPVVVRPS 709

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
                  + ++  D+ +   + Q+   +    +L+++Y+ G E+    + D    +    
Sbjct: 710 YVLGGRAMEIVDNDKELENYMTQAVKASPEHPVLVDRYLTGKEIEVDAICDGETVIIPGI 769

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
           +   +           +S  V P + +  D    ++       + +   G+    F+   
Sbjct: 770 MEHIERAGVHS----GDSIAVYPPQTLTEDELATLEDYTIKLAKGLNIIGLINIQFVIAH 825

Query: 253 LSRKVFWLEIN-----VQPGMTPVSIFPEM 277
               V+ LE+N       P ++ ++  P  
Sbjct: 826 DG--VYVLEVNPRSSRTVPFLSKITDIPMA 853


>gi|21904290|gb|AAM79169.1| putative carbamoylphosphate synthetase [Streptococcus pyogenes
           MGAS315]
          Length = 1048

 Score = 79.0 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 38/292 (13%), Positives = 100/292 (34%), Gaps = 32/292 (10%)

Query: 24  SALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH-----G---NFGEDG 66
            A++ AG++   +         D   S  L    L  +   NV+      G    FG   
Sbjct: 569 KAIQKAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIDLEQPKGVIVQFGGQT 628

Query: 67  LV---QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQ 121
            +   QA+ E   +    + +     + D+   ++ +   G+P             +++ 
Sbjct: 629 AINLAQALSE-AGVTILGTQVEDLDRAEDRDLFEKALKELGIPQPQGQTATNEEEALEAA 687

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
             I  P +++P        + +++  + +   +  +   +    +L++ Y+ G E     
Sbjct: 688 KKIGFPVLVRPSYVLGGRAMEIVENKEDLIEYIRTAVKASPEHPILVDSYIFGKECEVDA 747

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241
           + D    +    +   +       +S  +     P ++   I + +          + C 
Sbjct: 748 ISDGKSVLIPGIMEHIERAGV---HSGDSMAVYPPQQLSKQIQETIAEYTKRLAIGLNCI 804

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           G+    F+    + +V+ +E+N +   T     P ++   G    ++   ++
Sbjct: 805 GMMNVQFVI--KNEQVYVIEVNPRASRT----VPFLSKVTGIPMAQIATKLI 850



 Score = 69.4 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 50/296 (16%), Positives = 107/296 (36%), Gaps = 34/296 (11%)

Query: 25  ALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNVLHGNFG 63
           AL++ G+KV  ++        D+ +                ++   +PD     L G  G
Sbjct: 26  ALKEEGYKVILVNSNPATIMTDKEIADKVYIEPLTLEFVNRIIRKERPDAILPTLGGQTG 85

Query: 64  EDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFT 117
            +  +      IL+ LEI    + + A   + D+   KQ++     P+  S +V      
Sbjct: 86  LNMAMALSKAGILDDLEIELLGTKLSAIDQAEDRDLFKQLMQELDQPIPESTIVKTVDEA 145

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IE 176
           +     I  P +++P       G  +   ++ +          +   Q LIE+ + G  E
Sbjct: 146 VTFARDIGYPVIVRPAFTLGGTGGGICSSEEELCEITENGLKLSPVTQCLIERSIAGFKE 205

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +   VM D++ +   + V   + +     ++  +        +     + ++  +    +
Sbjct: 206 IEYEVMRDSADNA--LVVCNMENFDPVGIHTGDSIVFAPTQTLSDIENQMLRDASLKIIR 263

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           A+   G        DP S K + +E+N  P ++  S     +   GY   +L   +
Sbjct: 264 ALKIEGGCNVQLALDPYSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAKI 315


>gi|49486042|ref|YP_043263.1| carbamoyl phosphate synthase large subunit [Staphylococcus aureus
           subsp. aureus MSSA476]
 gi|57651772|ref|YP_186078.1| carbamoyl phosphate synthase large subunit [Staphylococcus aureus
           subsp. aureus COL]
 gi|87160076|ref|YP_493793.1| carbamoyl phosphate synthase large subunit [Staphylococcus aureus
           subsp. aureus USA300_FPR3757]
 gi|88194909|ref|YP_499709.1| carbamoyl phosphate synthase large subunit [Staphylococcus aureus
           subsp. aureus NCTC 8325]
 gi|151221326|ref|YP_001332148.1| carbamoyl phosphate synthase large subunit [Staphylococcus aureus
           subsp. aureus str. Newman]
 gi|161509376|ref|YP_001575035.1| carbamoyl phosphate synthase large subunit [Staphylococcus aureus
           subsp. aureus USA300_TCH1516]
 gi|221141993|ref|ZP_03566486.1| carbamoyl phosphate synthase large subunit [Staphylococcus aureus
           subsp. aureus str. JKD6009]
 gi|253733559|ref|ZP_04867724.1| carbamoyl phosphate synthase large subunit [Staphylococcus aureus
           subsp. aureus TCH130]
 gi|257425256|ref|ZP_05601681.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus
           subsp. aureus 55/2053]
 gi|257427916|ref|ZP_05604314.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus
           subsp. aureus 65-1322]
 gi|257430549|ref|ZP_05606931.1| carbamoyl-phosphate synthase large subunit [Staphylococcus aureus
           subsp. aureus 68-397]
 gi|257433310|ref|ZP_05609668.1| carbamoyl-phosphate synthase large subunit [Staphylococcus aureus
           subsp. aureus E1410]
 gi|257436152|ref|ZP_05612199.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus
           subsp. aureus M876]
 gi|258452500|ref|ZP_05700506.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus
           A5948]
 gi|262048106|ref|ZP_06020993.1| carbamoyl-phosphate synthase large subunit [Staphylococcus aureus
           D30]
 gi|262051838|ref|ZP_06024054.1| carbamoyl-phosphate synthase large subunit [Staphylococcus aureus
           930918-3]
 gi|282910775|ref|ZP_06318578.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus
           subsp. aureus WBG10049]
 gi|282913978|ref|ZP_06321765.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus
           subsp. aureus M899]
 gi|282918900|ref|ZP_06326635.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus
           subsp. aureus C427]
 gi|282919985|ref|ZP_06327714.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus
           A9765]
 gi|282924023|ref|ZP_06331699.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus
           subsp. aureus C101]
 gi|284024127|ref|ZP_06378525.1| carbamoyl phosphate synthase large subunit [Staphylococcus aureus
           subsp. aureus 132]
 gi|293501011|ref|ZP_06666862.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus
           subsp. aureus 58-424]
 gi|293509970|ref|ZP_06668678.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus
           subsp. aureus M809]
 gi|293526558|ref|ZP_06671243.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus
           subsp. aureus M1015]
 gi|294848196|ref|ZP_06788943.1| carbamoyl-phosphate synthase [Staphylococcus aureus A9754]
 gi|297208153|ref|ZP_06924584.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus
           subsp. aureus ATCC 51811]
 gi|304381234|ref|ZP_07363887.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus
           subsp. aureus ATCC BAA-39]
 gi|60389608|sp|Q6GA10|CARB_STAAS RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|81859599|sp|Q5HGM9|CARB_STAAC RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|122539724|sp|Q2FZ72|CARB_STAA8 RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|123486238|sp|Q2FHN5|CARB_STAA3 RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|172048850|sp|A6QGA4|CARB_STAAE RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|189081835|sp|A8Z3P0|CARB_STAAT RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|49244485|emb|CAG42914.1| putative carbamoyl-phosphate synthase, pyrimidine-specific, large
           chain [Staphylococcus aureus subsp. aureus MSSA476]
 gi|57285958|gb|AAW38052.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus
           subsp. aureus COL]
 gi|87126050|gb|ABD20564.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus
           subsp. aureus USA300_FPR3757]
 gi|87202467|gb|ABD30277.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus
           subsp. aureus NCTC 8325]
 gi|150374126|dbj|BAF67386.1| carbamoyl-phosphate synthase, pyrimidine-specific, large chain
           [Staphylococcus aureus subsp. aureus str. Newman]
 gi|160368185|gb|ABX29156.1| carbamoyl-phosphate synthase (glutamine-hydrolyzing), large subunit
           [Staphylococcus aureus subsp. aureus USA300_TCH1516]
 gi|253728613|gb|EES97342.1| carbamoyl phosphate synthase large subunit [Staphylococcus aureus
           subsp. aureus TCH130]
 gi|257271713|gb|EEV03851.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus
           subsp. aureus 55/2053]
 gi|257274757|gb|EEV06244.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus
           subsp. aureus 65-1322]
 gi|257278677|gb|EEV09296.1| carbamoyl-phosphate synthase large subunit [Staphylococcus aureus
           subsp. aureus 68-397]
 gi|257281403|gb|EEV11540.1| carbamoyl-phosphate synthase large subunit [Staphylococcus aureus
           subsp. aureus E1410]
 gi|257284434|gb|EEV14554.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus
           subsp. aureus M876]
 gi|257859718|gb|EEV82560.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus
           A5948]
 gi|259160239|gb|EEW45267.1| carbamoyl-phosphate synthase large subunit [Staphylococcus aureus
           930918-3]
 gi|259163672|gb|EEW48227.1| carbamoyl-phosphate synthase large subunit [Staphylococcus aureus
           D30]
 gi|269940695|emb|CBI49076.1| putative carbamoyl-phosphate synthase,pyrimidine-specific, large
           chain [Staphylococcus aureus subsp. aureus TW20]
 gi|282313995|gb|EFB44387.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus
           subsp. aureus C101]
 gi|282316710|gb|EFB47084.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus
           subsp. aureus C427]
 gi|282322046|gb|EFB52370.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus
           subsp. aureus M899]
 gi|282325380|gb|EFB55689.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus
           subsp. aureus WBG10049]
 gi|282594701|gb|EFB99685.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus
           A9765]
 gi|290920630|gb|EFD97693.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus
           subsp. aureus M1015]
 gi|291096016|gb|EFE26277.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus
           subsp. aureus 58-424]
 gi|291466914|gb|EFF09432.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus
           subsp. aureus M809]
 gi|294824996|gb|EFG41418.1| carbamoyl-phosphate synthase [Staphylococcus aureus A9754]
 gi|296887396|gb|EFH26298.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus
           subsp. aureus ATCC 51811]
 gi|302751025|gb|ADL65202.1| putative carbamoyl-phosphate synthase, pyrimidine-specific, large
           chain [Staphylococcus aureus subsp. aureus str. JKD6008]
 gi|304340217|gb|EFM06158.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus
           subsp. aureus ATCC BAA-39]
 gi|312438420|gb|ADQ77491.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus
           subsp. aureus TCH60]
 gi|315198440|gb|EFU28769.1| carbamoyl phosphate synthase large subunit [Staphylococcus aureus
           subsp. aureus CGS01]
 gi|320140982|gb|EFW32829.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus
           subsp. aureus MRSA131]
 gi|320144303|gb|EFW36069.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus
           subsp. aureus MRSA177]
 gi|329313871|gb|AEB88284.1| Carbamoyl-phosphate synthase large chain [Staphylococcus aureus
           subsp. aureus T0131]
 gi|329724741|gb|EGG61246.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus
           subsp. aureus 21189]
 gi|329728758|gb|EGG65179.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus
           subsp. aureus 21193]
          Length = 1057

 Score = 79.0 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 52/315 (16%), Positives = 120/315 (38%), Gaps = 39/315 (12%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQID---------------------VDRSVGLV 45
           G ++E + +   G     AL++ G++V  ++                         +  +
Sbjct: 21  GQAAEFDYA---GTQACLALKEEGYRVILVNSNPATIMTDKEIADKVYIEPLTHDFIARI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   +PD     L G  G +  +Q     +L+   +    + + +   + D+   + +++
Sbjct: 78  IRKEQPDALLPTLGGQTGLNMAIQLHESGVLQDNNVQLLGTELTSIQQAEDREMFRTLMN 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
              VPV  S +VN        +  +  P +++P       G  +   D+ +   +     
Sbjct: 138 DLNVPVPESDIVNTVEQAFKFKEQVGYPLIVRPAFTMGGTGGGICHNDEELHEIVSNGLH 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
           ++   Q L+E+ + G  E+   VM D + +   I V   +     +   + +S  V P++
Sbjct: 198 YSPATQCLLEKSIAGFKEIEYEVMRDKNDNA--IVVCNMENID-PVGIHTGDSIVVAPSQ 254

Query: 219 -IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
            +    Y+ ++ ++    +A+G  G        DP S   + +E+N  P ++  S     
Sbjct: 255 TLSDVEYQMLRDVSLKVIRALGIEGGCNVQLALDPHSFDYYIIEVN--PRVSRSS--ALA 310

Query: 278 AAYAGYSFRELLLWM 292
           +   GY   +L   +
Sbjct: 311 SKATGYPIAKLAAKI 325



 Score = 72.8 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 26/210 (12%), Positives = 71/210 (33%), Gaps = 14/210 (6%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPL 133
            +    + +     + D+   + ++    VP             + +   I  P V++P 
Sbjct: 650 GVKILGTSLENLNRAEDRKEFEALLRKINVPQPQGKTATSPEEALANAAEIGYPVVVRPS 709

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
                  + ++  D+ +   + Q+   +    +L+++Y+ G E+    + D    +    
Sbjct: 710 YVLGGRAMEIVDNDKELENYMTQAVKASPEHPVLVDRYLTGKEIEVDAICDGETVIIPGI 769

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
           +   +           +S  V P + +  D    ++       + +   G+    F+   
Sbjct: 770 MEHIERAGVHS----GDSIAVYPPQTLTEDELATLEDYTIKLAKGLNIIGLINIQFVIAH 825

Query: 253 LSRKVFWLEIN-----VQPGMTPVSIFPEM 277
               V+ LE+N       P ++ ++  P  
Sbjct: 826 DG--VYVLEVNPRSSRTVPFLSKITDIPMA 853


>gi|84501581|ref|ZP_00999753.1| propionyl-CoA carboxylase, alpha subunit [Oceanicola batsensis
           HTCC2597]
 gi|84390202|gb|EAQ02761.1| propionyl-CoA carboxylase, alpha subunit [Oceanicola batsensis
           HTCC2597]
          Length = 681

 Score = 79.0 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 75/221 (33%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      LE   + +    + A     DK+ SK++    GV   P  + 
Sbjct: 77  AVHPGYGFLSENPKFAQALEDAGVAFIGPPVKAIEAMGDKITSKKIAQEAGVNTVPGYMG 136

Query: 114 NRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGD 164
                D        I  P +IK   GG   G+ +   D              ++S+   D
Sbjct: 137 LIEDADEAVKISSEIGYPVMIKASAGGGGKGMRIAWTDDEAREGFQSSKNEAANSFG-DD 195

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           ++ IE++V     +   V+ D+  +   +   +        K             +  + 
Sbjct: 196 RIFIEKFVTQPRHIEIQVLCDSHGNGIYLGERECSIQRRNQK----VVEEAPSPFLDEET 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +   A    +A+G       +F+ D      ++LE+N 
Sbjct: 252 RRAMGEQAVALAKAVGYASAGTVEFIVDGEKN-FYFLEMNT 291


>gi|313672530|ref|YP_004050641.1| biotin carboxylase [Calditerrivibrio nitroreducens DSM 19672]
 gi|312939286|gb|ADR18478.1| biotin carboxylase [Calditerrivibrio nitroreducens DSM 19672]
          Length = 505

 Score = 79.0 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 32/216 (14%), Positives = 81/216 (37%), Gaps = 16/216 (7%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
           +G + E+   +   +   + +         +   K  ++ V++  GVP  P        +
Sbjct: 83  YGFYAENADFRRACDEAGVIFIGPSAEHIEMMGSKTGARAVMAEAGVPTVPGTKNPIRDV 142

Query: 119 DSQHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS-----SWNHGDQLLIE 169
           +        I  P ++K + GG   G+ ++ K++        +S     ++ +GD + +E
Sbjct: 143 EEAKKVAREIGYPIMLKAVYGGGGKGMRLVHKEEDFESSFRMASSEALNAFGNGD-VYME 201

Query: 170 QYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           +++     +   V+GD   +   +   +        K             I  +  +++ 
Sbjct: 202 KFIVQPHHVEIQVLGDMHGNAIHLFDRECSIQRRHQK----VIEEAPSPFISKETREKMC 257

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           ++A  A + IG       +F+     +  ++LE+N 
Sbjct: 258 KVAAEAIRKIGYYSAGTLEFIV-GADQNFYFLEMNT 292


>gi|302332807|gb|ADL23000.1| putative carbamoyl-phosphate synthase, pyrimidine-specific, large
           chain [Staphylococcus aureus subsp. aureus JKD6159]
          Length = 1057

 Score = 79.0 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 52/315 (16%), Positives = 120/315 (38%), Gaps = 39/315 (12%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQID---------------------VDRSVGLV 45
           G ++E + +   G     AL++ G++V  ++                         +  +
Sbjct: 21  GQAAEFDYA---GTQACLALKEEGYRVILVNSNPATIMTDKEIADKVYIEPLTHDFIARI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   +PD     L G  G +  +Q     +L+   +    + + +   + D+   + +++
Sbjct: 78  IRKEQPDALLPTLGGQTGLNMAIQLHESGVLQDNNVQLLGTELTSIQQAEDREMFRTLMN 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
              VPV  S +VN        +  +  P +++P       G  +   D+ +   +     
Sbjct: 138 DLNVPVPESDIVNTVEQAFKFKEQVGYPLIVRPAFTMGGTGGGICHNDEELHEIVSNGLH 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
           ++   Q L+E+ + G  E+   VM D + +   I V   +     +   + +S  V P++
Sbjct: 198 YSPATQCLLEKSIAGFKEIEYEVMRDKNDNA--IVVCNMENID-PVGIHTGDSIVVAPSQ 254

Query: 219 -IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
            +    Y+ ++ ++    +A+G  G        DP S   + +E+N  P ++  S     
Sbjct: 255 TLSDVEYQMLRDVSLKVIRALGIEGGCNVQLALDPHSFDYYIIEVN--PRVSRSS--ALA 310

Query: 278 AAYAGYSFRELLLWM 292
           +   GY   +L   +
Sbjct: 311 SKATGYPIAKLAAKI 325



 Score = 72.8 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 26/210 (12%), Positives = 71/210 (33%), Gaps = 14/210 (6%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPL 133
            +    + +     + D+   + ++    VP             + +   I  P V++P 
Sbjct: 650 GVKILGTSLENLNRAEDRKEFEALLRKINVPQPQGKTATSPEEALANAAEIGYPVVVRPS 709

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
                  + ++  D+ +   + Q+   +    +L+++Y+ G E+    + D    +    
Sbjct: 710 YVLGGRAMEIVDNDKELENYMTQAVKASPEHPVLVDRYLTGKEIEVDAICDGETVIIPGI 769

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
           +   +           +S  V P + +  D    ++       + +   G+    F+   
Sbjct: 770 MEHIERAGVHS----GDSIAVYPPQTLTEDELATLEDYTIKLAKGLNIIGLINIQFVIAH 825

Query: 253 LSRKVFWLEIN-----VQPGMTPVSIFPEM 277
               V+ LE+N       P ++ ++  P  
Sbjct: 826 DG--VYVLEVNPRSSRTVPFLSKITDIPMA 853


>gi|283470413|emb|CAQ49624.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus
           subsp. aureus ST398]
          Length = 1057

 Score = 79.0 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 52/315 (16%), Positives = 120/315 (38%), Gaps = 39/315 (12%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQID---------------------VDRSVGLV 45
           G ++E + +   G     AL++ G++V  ++                         +  +
Sbjct: 21  GQAAEFDYA---GTQACLALKEEGYRVILVNSNPATIMTDKEIADKVYIEPLTHDFIARI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   +PD     L G  G +  +Q     +L+   +    + + +   + D+   + +++
Sbjct: 78  IRKEQPDALLPTLGGQTGLNMAIQLHESGVLQDNNVQLLGTELTSIQQAEDREMFRTLMN 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
              VPV  S +VN        +  +  P +++P       G  +   D+ +   +     
Sbjct: 138 DLNVPVPESDIVNTVEQAFKFKEQVGYPLIVRPAFTMGGTGGGICHNDEELHEIVSNGLH 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
           ++   Q L+E+ + G  E+   VM D + +   I V   +     +   + +S  V P++
Sbjct: 198 YSPATQCLLEKSIAGFKEIEYEVMRDKNDNA--IVVCNMENID-PVGIHTGDSIVVAPSQ 254

Query: 219 -IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
            +    Y+ ++ ++    +A+G  G        DP S   + +E+N  P ++  S     
Sbjct: 255 TLSDVEYQMLRDVSLKVIRALGIEGGCNVQLALDPHSFDYYIIEVN--PRVSRSS--ALA 310

Query: 278 AAYAGYSFRELLLWM 292
           +   GY   +L   +
Sbjct: 311 SKATGYPIAKLAAKI 325



 Score = 72.8 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 26/210 (12%), Positives = 71/210 (33%), Gaps = 14/210 (6%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPL 133
            +    + +     + D+   + ++    VP             + +   I  P V++P 
Sbjct: 650 GVKILGTSLENLNRAEDRKEFEALLRKINVPQPQGKTATSPEEALANAAEIGYPVVVRPS 709

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
                  + ++  D+ +   + Q+   +    +L+++Y+ G E+    + D    +    
Sbjct: 710 YVLGGRAMEIVDNDKELENYMTQAVKASPEHPVLVDRYLTGKEIEVDAICDGETVIIPGI 769

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
           +   +           +S  V P + +  D    ++       + +   G+    F+   
Sbjct: 770 MEHIERAGVHS----GDSIAVYPPQTLTEDEIATLEDYTIKLAKGLNIIGLINIQFVIAH 825

Query: 253 LSRKVFWLEIN-----VQPGMTPVSIFPEM 277
               V+ LE+N       P ++ ++  P  
Sbjct: 826 DG--VYVLEVNPRSSRTVPFLSKITDIPMA 853


>gi|227364448|ref|ZP_03848538.1| phosphoribosylaminoimidazole carboxylase [Lactobacillus reuteri
           MM2-3]
 gi|325683647|ref|ZP_08163163.1| phosphoribosylaminoimidazole carboxylase ATPase subunit PurK
           [Lactobacillus reuteri MM4-1A]
 gi|227070541|gb|EEI08874.1| phosphoribosylaminoimidazole carboxylase [Lactobacillus reuteri
           MM2-3]
 gi|324977997|gb|EGC14948.1| phosphoribosylaminoimidazole carboxylase ATPase subunit PurK
           [Lactobacillus reuteri MM4-1A]
          Length = 384

 Score = 79.0 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 42/207 (20%), Positives = 87/207 (42%), Gaps = 15/207 (7%)

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQ 121
           E+  + A+ ++ +  Y   G      + +++R K  +   GV   P + V+      D+ 
Sbjct: 88  ENVDLNALEDVQDRVYLPQGTNLLYTTKNRLREKNFLRQAGVKTAPFMAVHTSAELKDAV 147

Query: 122 HLISPPYVIKPLKGG-SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTC 179
             I  P V+K  +GG    G  V++       DL + +        ++E +V    E + 
Sbjct: 148 KKIGYPAVLKTSEGGYDGHGQEVLRNKD----DLDKCAPILATGDCILEGWVPFNRECSV 203

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
            V  +   ++T   V ++  +   L  S      ++PA+I  ++ ++ Q++A    QAI 
Sbjct: 204 MVGRNEDGEITAFPVSENIHHDEILHLS------IVPARISSELQQKAQKIAVQIAQAIN 257

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQP 266
            RGI   +        +++  E+  +P
Sbjct: 258 LRGILGVEMFVT-DDGEIYINELAPRP 283


>gi|15900344|ref|NP_344948.1| acetyl-CoA carboxylase biotin carboxylase subunit [Streptococcus
           pneumoniae TIGR4]
 gi|111657616|ref|ZP_01408351.1| hypothetical protein SpneT_02001197 [Streptococcus pneumoniae
           TIGR4]
 gi|148983822|ref|ZP_01817141.1| biotin carboxylase subunit [Streptococcus pneumoniae SP3-BS71]
 gi|148993967|ref|ZP_01823337.1| biotin carboxylase subunit [Streptococcus pneumoniae SP9-BS68]
 gi|148996828|ref|ZP_01824546.1| biotin carboxylase subunit [Streptococcus pneumoniae SP11-BS70]
 gi|149007985|ref|ZP_01831542.1| biotin carboxylase subunit [Streptococcus pneumoniae SP18-BS74]
 gi|149023712|ref|ZP_01836192.1| biotin carboxylase subunit [Streptococcus pneumoniae SP23-BS72]
 gi|168482661|ref|ZP_02707613.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus
           pneumoniae CDC1873-00]
 gi|168485559|ref|ZP_02710067.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus
           pneumoniae CDC1087-00]
 gi|168488115|ref|ZP_02712314.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus
           pneumoniae SP195]
 gi|168490663|ref|ZP_02714806.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus
           pneumoniae CDC0288-04]
 gi|168495032|ref|ZP_02719175.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus
           pneumoniae CDC3059-06]
 gi|168576856|ref|ZP_02722706.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus
           pneumoniae MLV-016]
 gi|169834267|ref|YP_001693932.1| acetyl-CoA carboxylase biotin carboxylase subunit [Streptococcus
           pneumoniae Hungary19A-6]
 gi|182683393|ref|YP_001835140.1| acetyl-CoA carboxylase [Streptococcus pneumoniae CGSP14]
 gi|221231290|ref|YP_002510442.1| biotin carboxylase subunit of acetyl-CoA carboxylase [Streptococcus
           pneumoniae ATCC 700669]
 gi|225856153|ref|YP_002737664.1| acetyl-CoA carboxylase biotin carboxylase subunit [Streptococcus
           pneumoniae P1031]
 gi|225858278|ref|YP_002739788.1| acetyl-CoA carboxylase biotin carboxylase subunit [Streptococcus
           pneumoniae 70585]
 gi|225860448|ref|YP_002741957.1| acetyl-CoA carboxylase biotin carboxylase subunit [Streptococcus
           pneumoniae Taiwan19F-14]
 gi|237650359|ref|ZP_04524611.1| acetyl-CoA carboxylase biotin carboxylase subunit [Streptococcus
           pneumoniae CCRI 1974]
 gi|237822047|ref|ZP_04597892.1| acetyl-CoA carboxylase biotin carboxylase subunit [Streptococcus
           pneumoniae CCRI 1974M2]
 gi|298230878|ref|ZP_06964559.1| acetyl-CoA carboxylase biotin carboxylase subunit [Streptococcus
           pneumoniae str. Canada MDR_19F]
 gi|298254612|ref|ZP_06978198.1| acetyl-CoA carboxylase biotin carboxylase subunit [Streptococcus
           pneumoniae str. Canada MDR_19A]
 gi|298502218|ref|YP_003724158.1| acetyl-CoA carboxylase biotin carboxylase subunit [Streptococcus
           pneumoniae TCH8431/19A]
 gi|303255404|ref|ZP_07341470.1| acetyl-CoA carboxylase biotin carboxylase subunit [Streptococcus
           pneumoniae BS455]
 gi|303259501|ref|ZP_07345478.1| acetyl-CoA carboxylase [Streptococcus pneumoniae SP-BS293]
 gi|303262364|ref|ZP_07348307.1| acetyl-CoA carboxylase [Streptococcus pneumoniae SP14-BS292]
 gi|303264782|ref|ZP_07350699.1| acetyl-CoA carboxylase [Streptococcus pneumoniae BS397]
 gi|303266621|ref|ZP_07352506.1| acetyl-CoA carboxylase [Streptococcus pneumoniae BS457]
 gi|303268854|ref|ZP_07354641.1| acetyl-CoA carboxylase [Streptococcus pneumoniae BS458]
 gi|307067072|ref|YP_003876038.1| biotin carboxylase [Streptococcus pneumoniae AP200]
 gi|307126639|ref|YP_003878670.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus
           pneumoniae 670-6B]
 gi|9789237|gb|AAF98279.1|AF197933_9 acetyl-CoA carboxylase biotin carboxylase subunit [Streptococcus
           pneumoniae]
 gi|14971895|gb|AAK74588.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus
           pneumoniae TIGR4]
 gi|147757403|gb|EDK64442.1| biotin carboxylase subunit [Streptococcus pneumoniae SP11-BS70]
 gi|147760497|gb|EDK67473.1| biotin carboxylase subunit [Streptococcus pneumoniae SP18-BS74]
 gi|147923969|gb|EDK75081.1| biotin carboxylase subunit [Streptococcus pneumoniae SP3-BS71]
 gi|147927556|gb|EDK78583.1| biotin carboxylase subunit [Streptococcus pneumoniae SP9-BS68]
 gi|147929649|gb|EDK80641.1| biotin carboxylase subunit [Streptococcus pneumoniae SP23-BS72]
 gi|168996769|gb|ACA37381.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus
           pneumoniae Hungary19A-6]
 gi|172043636|gb|EDT51682.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus
           pneumoniae CDC1873-00]
 gi|182628727|gb|ACB89675.1| acetyl-CoA carboxylase [Streptococcus pneumoniae CGSP14]
 gi|183571203|gb|EDT91731.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus
           pneumoniae CDC1087-00]
 gi|183573043|gb|EDT93571.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus
           pneumoniae SP195]
 gi|183574948|gb|EDT95476.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus
           pneumoniae CDC0288-04]
 gi|183575094|gb|EDT95622.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus
           pneumoniae CDC3059-06]
 gi|183577497|gb|EDT98025.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus
           pneumoniae MLV-016]
 gi|220673750|emb|CAR68249.1| biotin carboxylase subunit of acetyl-CoA carboxylase [Streptococcus
           pneumoniae ATCC 700669]
 gi|225721113|gb|ACO16967.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus
           pneumoniae 70585]
 gi|225726037|gb|ACO21889.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus
           pneumoniae P1031]
 gi|225727372|gb|ACO23223.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus
           pneumoniae Taiwan19F-14]
 gi|298237813|gb|ADI68944.1| acetyl-CoA carboxylase biotin carboxylase subunit [Streptococcus
           pneumoniae TCH8431/19A]
 gi|301793666|emb|CBW36051.1| biotin carboxylase subunit of acetyl-CoA carboxylase [Streptococcus
           pneumoniae INV104]
 gi|301799524|emb|CBW32071.1| biotin carboxylase subunit of acetyl-CoA carboxylase [Streptococcus
           pneumoniae OXC141]
 gi|301801336|emb|CBW34019.1| biotin carboxylase subunit of acetyl-CoA carboxylase [Streptococcus
           pneumoniae INV200]
 gi|302597649|gb|EFL64729.1| acetyl-CoA carboxylase biotin carboxylase subunit [Streptococcus
           pneumoniae BS455]
 gi|302636463|gb|EFL66955.1| acetyl-CoA carboxylase [Streptococcus pneumoniae SP14-BS292]
 gi|302639435|gb|EFL69893.1| acetyl-CoA carboxylase [Streptococcus pneumoniae SP-BS293]
 gi|302641635|gb|EFL71995.1| acetyl-CoA carboxylase [Streptococcus pneumoniae BS458]
 gi|302643865|gb|EFL74127.1| acetyl-CoA carboxylase [Streptococcus pneumoniae BS457]
 gi|302645649|gb|EFL75879.1| acetyl-CoA carboxylase [Streptococcus pneumoniae BS397]
 gi|306408609|gb|ADM84036.1| Biotin carboxylase [Streptococcus pneumoniae AP200]
 gi|306483701|gb|ADM90570.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus
           pneumoniae 670-6B]
 gi|327390834|gb|EGE89174.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus
           pneumoniae GA04375]
 gi|332075270|gb|EGI85740.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus
           pneumoniae GA17570]
 gi|332076869|gb|EGI87331.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus
           pneumoniae GA17545]
 gi|332077708|gb|EGI88169.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus
           pneumoniae GA41301]
 gi|332202333|gb|EGJ16402.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus
           pneumoniae GA41317]
 gi|332203595|gb|EGJ17662.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus
           pneumoniae GA47368]
 gi|332204451|gb|EGJ18516.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus
           pneumoniae GA47901]
          Length = 455

 Score = 79.0 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 75/220 (34%), Gaps = 16/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  FG   E+     + E + I +         +  DK+ ++  +   GVPV P    
Sbjct: 77  AIHPGFGFLSENSKFATMCEEVGIKFIGPSGHVMDMMGDKINARAQMIKAGVPVIPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
            +  +   +     I  P ++K   GG   GI  ++K   +      +SS          
Sbjct: 137 EVHNSEEALIVAEKIGYPVMLKASAGGGGKGIRKVEKPDDLVSAFETASSEAKANYGNGA 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+ +     +   ++GD    V  +            K             I   + 
Sbjct: 197 MYIERVIYPARHIEVQILGDEHGHVIHLGERDCSLQRNNQKVL----EESPSIAIGKTLR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            E+   A  A + +G       +FL D  S   +++E+N 
Sbjct: 253 HEIGAAAVRAAEFVGYENAGTIEFLLDEASSNFYFMEMNT 292


>gi|15924193|ref|NP_371727.1| carbamoyl phosphate synthase large subunit [Staphylococcus aureus
           subsp. aureus Mu50]
 gi|15926786|ref|NP_374319.1| carbamoyl phosphate synthase large subunit [Staphylococcus aureus
           subsp. aureus N315]
 gi|148267694|ref|YP_001246637.1| carbamoyl phosphate synthase large subunit [Staphylococcus aureus
           subsp. aureus JH9]
 gi|150393752|ref|YP_001316427.1| carbamoyl phosphate synthase large subunit [Staphylococcus aureus
           subsp. aureus JH1]
 gi|156979524|ref|YP_001441783.1| carbamoyl phosphate synthase large subunit [Staphylococcus aureus
           subsp. aureus Mu3]
 gi|253315561|ref|ZP_04838774.1| carbamoyl phosphate synthase large subunit [Staphylococcus aureus
           subsp. aureus str. CF-Marseille]
 gi|255005990|ref|ZP_05144591.2| carbamoyl phosphate synthase large subunit [Staphylococcus aureus
           subsp. aureus Mu50-omega]
 gi|257795741|ref|ZP_05644720.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus
           A9781]
 gi|258415965|ref|ZP_05682235.1| carbamoyl phosphate synthase large subunit [Staphylococcus aureus
           A9763]
 gi|258419712|ref|ZP_05682679.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus
           A9719]
 gi|258438754|ref|ZP_05689907.1| carbamoyl-phosphate synthase large subunit [Staphylococcus aureus
           A9299]
 gi|258444540|ref|ZP_05692869.1| carbamoyl-phosphate synthase large subunit [Staphylococcus aureus
           A8115]
 gi|258447627|ref|ZP_05695771.1| carbamoyl-phosphate synthase large subunit [Staphylococcus aureus
           A6300]
 gi|258449469|ref|ZP_05697572.1| carbamoyl-phosphate synthase large subunit [Staphylococcus aureus
           A6224]
 gi|258454848|ref|ZP_05702812.1| carbamoyl-phosphate synthase large subunit [Staphylococcus aureus
           A5937]
 gi|269202817|ref|YP_003282086.1| carbamoyl phosphate synthase large subunit [Staphylococcus aureus
           subsp. aureus ED98]
 gi|282892689|ref|ZP_06300924.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus
           A8117]
 gi|282927543|ref|ZP_06335159.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus
           A10102]
 gi|295407141|ref|ZP_06816942.1| carbamoyl-phosphate synthase [Staphylococcus aureus A8819]
 gi|296275224|ref|ZP_06857731.1| carbamoyl phosphate synthase large subunit [Staphylococcus aureus
           subsp. aureus MR1]
 gi|297245973|ref|ZP_06929832.1| carbamoyl-phosphate synthase [Staphylococcus aureus A8796]
 gi|54036831|sp|P63740|CARB_STAAN RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|54040879|sp|P63739|CARB_STAAM RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|167006449|sp|A7X1F4|CARB_STAA1 RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|189081833|sp|A6U122|CARB_STAA2 RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|189081834|sp|A5IS88|CARB_STAA9 RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|13701002|dbj|BAB42298.1| carbamoyl-phosphate synthase large chain [Staphylococcus aureus
           subsp. aureus N315]
 gi|14246973|dbj|BAB57365.1| carbamoyl-phosphate synthase large chain [Staphylococcus aureus
           subsp. aureus Mu50]
 gi|147740763|gb|ABQ49061.1| carbamoyl-phosphate synthase large subunit [Staphylococcus aureus
           subsp. aureus JH9]
 gi|149946204|gb|ABR52140.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus
           subsp. aureus JH1]
 gi|156721659|dbj|BAF78076.1| carbamoyl-phosphate synthase large chain [Staphylococcus aureus
           subsp. aureus Mu3]
 gi|257789713|gb|EEV28053.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus
           A9781]
 gi|257839301|gb|EEV63775.1| carbamoyl phosphate synthase large subunit [Staphylococcus aureus
           A9763]
 gi|257844297|gb|EEV68679.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus
           A9719]
 gi|257848013|gb|EEV72006.1| carbamoyl-phosphate synthase large subunit [Staphylococcus aureus
           A9299]
 gi|257850033|gb|EEV73986.1| carbamoyl-phosphate synthase large subunit [Staphylococcus aureus
           A8115]
 gi|257853818|gb|EEV76777.1| carbamoyl-phosphate synthase large subunit [Staphylococcus aureus
           A6300]
 gi|257857457|gb|EEV80355.1| carbamoyl-phosphate synthase large subunit [Staphylococcus aureus
           A6224]
 gi|257863231|gb|EEV85995.1| carbamoyl-phosphate synthase large subunit [Staphylococcus aureus
           A5937]
 gi|262075107|gb|ACY11080.1| carbamoyl phosphate synthase large subunit [Staphylococcus aureus
           subsp. aureus ED98]
 gi|282590546|gb|EFB95623.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus
           A10102]
 gi|282764686|gb|EFC04811.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus
           A8117]
 gi|285816885|gb|ADC37372.1| Carbamoyl-phosphate synthase large chain [Staphylococcus aureus
           04-02981]
 gi|294967994|gb|EFG44022.1| carbamoyl-phosphate synthase [Staphylococcus aureus A8819]
 gi|297177137|gb|EFH36391.1| carbamoyl-phosphate synthase [Staphylococcus aureus A8796]
 gi|312829596|emb|CBX34438.1| carbamoyl-phosphate synthase pyrimidine-specific large chain
           (Carbamoyl-phosphate synthetase ammonia chain)
           [Staphylococcus aureus subsp. aureus ECT-R 2]
 gi|315130994|gb|EFT86978.1| carbamoyl phosphate synthase large subunit [Staphylococcus aureus
           subsp. aureus CGS03]
 gi|329727466|gb|EGG63922.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus
           subsp. aureus 21172]
          Length = 1057

 Score = 79.0 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 52/315 (16%), Positives = 120/315 (38%), Gaps = 39/315 (12%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQID---------------------VDRSVGLV 45
           G ++E + +   G     AL++ G++V  ++                         +  +
Sbjct: 21  GQAAEFDYA---GTQACLALKEEGYRVILVNSNPATIMTDKEIADKVYIEPLTHDFIARI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   +PD     L G  G +  +Q     +L+   +    + + +   + D+   + +++
Sbjct: 78  IRKEQPDALLPTLGGQTGLNMAIQLHESGVLQDNNVQLLGTELTSIQQAEDREMFRTLMN 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
              VPV  S +VN        +  +  P +++P       G  +   D+ +   +     
Sbjct: 138 DLNVPVPESDIVNTVEQAFKFKEQVGYPLIVRPAFTMGGTGGGICHNDEELHEIVSNGLH 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
           ++   Q L+E+ + G  E+   VM D + +   I V   +     +   + +S  V P++
Sbjct: 198 YSPATQCLLEKSIAGFKEIEYEVMRDKNDNA--IVVCNMENID-PVGIHTGDSIVVAPSQ 254

Query: 219 -IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
            +    Y+ ++ ++    +A+G  G        DP S   + +E+N  P ++  S     
Sbjct: 255 TLSDVEYQMLRDVSLKVIRALGIEGGCNVQLALDPHSFDYYIIEVN--PRVSRSS--ALA 310

Query: 278 AAYAGYSFRELLLWM 292
           +   GY   +L   +
Sbjct: 311 SKATGYPIAKLAAKI 325



 Score = 73.6 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 27/210 (12%), Positives = 72/210 (34%), Gaps = 14/210 (6%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVC--PSILVNRFTMDSQHLISPPYVIKPL 133
            +    + +     + D+   + ++    VP     S       + +   I  P V++P 
Sbjct: 650 GVKILGTSLENLNRAEDRKEFEALLRKINVPQPQGKSATSPEEALANAAEIGYPVVVRPS 709

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
                  + ++  D+ +   + Q+   +    +L+++Y+ G E+    + D    +    
Sbjct: 710 YVLGGRAMEIVDNDKELENYMTQAVKASPEHPVLVDRYLTGKEIEVDAICDGETVIIPGI 769

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
           +   +           +S  V P + +  D    ++       + +   G+    F+   
Sbjct: 770 MEHIERAGVHS----GDSIAVYPPQTLTEDELATLEDYTIKLAKGLNIIGLINIQFVIAH 825

Query: 253 LSRKVFWLEIN-----VQPGMTPVSIFPEM 277
               V+ LE+N       P ++ ++  P  
Sbjct: 826 DG--VYVLEVNPRSSRTVPFLSKITDIPMA 853


>gi|255658273|ref|ZP_05403682.1| carbamoyl-phosphate synthase, large subunit [Mitsuokella multacida
           DSM 20544]
 gi|260849586|gb|EEX69593.1| carbamoyl-phosphate synthase, large subunit [Mitsuokella multacida
           DSM 20544]
          Length = 1065

 Score = 79.0 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 48/286 (16%), Positives = 111/286 (38%), Gaps = 33/286 (11%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI---------DVD------------RSVGLV 45
           G ++E + +   G     AL++ G +V  +         D                +  +
Sbjct: 11  GQAAEFDYA---GSQACRALKEEGLEVVLVNSNPATIMTDTHIADRVYIEPLTVEFLEEI 67

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           ++  +PD     L G  G +  VQ     +LE   +    + + A   + D+   K+ + 
Sbjct: 68  ISKERPDGLLATLGGQAGLNLAVQLSEKGVLEKYHVELLGTPLKAIERAEDRELFKETMQ 127

Query: 102 SCGVPVCPSILVNR--FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G P+  S +V      ++  + I  P +++P       G  + + ++ +   +++  +
Sbjct: 128 KLGEPIPESTIVEDVPSAVEFANEIGYPVIVRPAYTMGGTGGGIAENEEELVEIVIKGLT 187

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
           ++   Q+LIE+ V G  E+   VM D   +   I V   + +     ++  +        
Sbjct: 188 YSMIGQVLIERSVAGWKEIEYEVMRDGHDN--CITVCNMENFDPVGVHTGDSIVVAPSQT 245

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +    Y+ ++  +    + +G  G   + +  DP S + + +E+N 
Sbjct: 246 LTDHEYQMLRSASLRIIRELGIEGGCNAQYALDPNSNRYYVIEVNP 291



 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 38/262 (14%), Positives = 89/262 (33%), Gaps = 28/262 (10%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ------ 69
           AL + G +   I         D D S  L    L  +   N++     E  +VQ      
Sbjct: 572 ALREMGIEAIIINNNPETVSTDFDISDRLYFEPLTTEDVLNIIDKENPEGVIVQFGGQTA 631

Query: 70  ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--QHL 123
               A L+   +    + +     + D+ R  +V++   +P    I V            
Sbjct: 632 INLAASLQKAGVKVFGTSVDDIDRAEDRERFDEVLTQTQIPRPQGISVTNLDEAVTGAAK 691

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + ++  +  +   + ++        +L+++Y+ G E+    + 
Sbjct: 692 IGYPVMVRPSYVLGGRAMEIVYNEAELRDYMSRAVKVTPDHPVLVDRYMQGTEVEVDGIS 751

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRG 242
           D    V    +   +           +S  V P + +   +   +         ++  +G
Sbjct: 752 DGVDVVIPGIMEHVERAGVHS----GDSIAVYPPQTLSSKVIYTIIDYTKRLALSLHVKG 807

Query: 243 ISRSDFLFDPLSRKVFWLEINV 264
           +    F+   +  +V+ +E+N 
Sbjct: 808 LLNIQFVV--VDGEVYIIEVNP 827


>gi|164686578|ref|ZP_02210606.1| hypothetical protein CLOBAR_00170 [Clostridium bartlettii DSM
           16795]
 gi|164604307|gb|EDQ97772.1| hypothetical protein CLOBAR_00170 [Clostridium bartlettii DSM
           16795]
          Length = 1151

 Score = 79.0 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 45/245 (18%), Positives = 92/245 (37%), Gaps = 24/245 (9%)

Query: 35  QIDV--DRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASAL 89
            IDV  D    + LA  K     + +H  +G   E+       E   I +          
Sbjct: 60  PIDVYLDMDGIIALAKEKN---VDAIHPGYGFLAENSEFVRKCEENGIAFIGPSADIMDK 116

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI----SPPYVIKPLKGGSSLGIIVIK 145
             DK+ SK+V  +  VP  P +     T++    +      P ++K   GG   G+ V+ 
Sbjct: 117 MGDKINSKKVAHAADVPTIPGVDKVIETVEEAKKVADYVGYPVMVKASNGGGGRGMRVVY 176

Query: 146 KDQSIPLDLLQSSSWNH----GDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFY 200
            ++ + L+   + S +        + IE+Y+ D   +   ++GD   ++  +        
Sbjct: 177 NEKDLALEYETACSESRKAFGKAVIFIEKYIVDPKHIEVQILGDKEGNIVHLYE-----R 231

Query: 201 SYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
              ++          PA  +P ++ + +   A    +++G       +FL D      ++
Sbjct: 232 DCSVQRRHQKIIEYAPAFSLPKEVRENICNDAVKIAKSVGYVNAGTLEFLVDAEGNH-YF 290

Query: 260 LEINV 264
           +E+N 
Sbjct: 291 IEMNP 295


>gi|284030863|ref|YP_003380794.1| phosphoribosylglycinamide synthetase [Kribbella flavida DSM 17836]
 gi|283810156|gb|ADB31995.1| phosphoribosylglycinamide synthetase [Kribbella flavida DSM 17836]
          Length = 423

 Score = 79.0 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 38/200 (19%), Positives = 85/200 (42%), Gaps = 21/200 (10%)

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKP 132
           L +P     +       DK  ++  ++  GVP   S+LV+     + +   +  P ++KP
Sbjct: 98  LGLP--GGDVEMVNRCRDKHLTRTALAEHGVPQPESVLVDTVDEALVTAEKLGYPVILKP 155

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQS------SSWNHGDQLLIEQYVDGIELTC--GVMGD 184
               +SLG++ +     +  +   +       + ++  ++L+E++ DG E++    V+  
Sbjct: 156 RALAASLGVVKVNSADELRANWAFAHDTTVPEAPHYDVKVLVEEFADGYEISIDSAVLSG 215

Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR-GI 243
                  +A  +  +  Y  +       H + A  PL   +++ ++   AH AI    G+
Sbjct: 216 QVTPF-CLARKEIGYPPYAEEIG-----HFVDAADPLLADEQLFQVLVDAHAAIAFTDGV 269

Query: 244 SRSDFLFDPLSRKVFWLEIN 263
           + ++ +      KV  +EIN
Sbjct: 270 THTEIMMTADGPKV--IEIN 287


>gi|225864527|ref|YP_002749905.1| putative acetyl-CoA carboxylase, biotin carboxylase [Bacillus
           cereus 03BB102]
 gi|229184775|ref|ZP_04311968.1| Biotin carboxylase [Bacillus cereus BGSC 6E1]
 gi|225786836|gb|ACO27053.1| putative acetyl-CoA carboxylase, biotin carboxylase [Bacillus
           cereus 03BB102]
 gi|228598679|gb|EEK56306.1| Biotin carboxylase [Bacillus cereus BGSC 6E1]
          Length = 445

 Score = 79.0 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 81/220 (36%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       +   I +             K+ S+  + +  VPV P I  
Sbjct: 77  AIHPGYGLLSENPSFPVRCKEEGIVFIGPSEEIITKMGSKIESRIAMQAADVPVVPGITT 136

Query: 114 N----RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
           N       ++    I  P ++K   GG  +G+ +++ +Q++         ++ ++    +
Sbjct: 137 NIETAEEAIEIAKQIGYPLMLKASAGGGGIGMQLMETEQTLTKAFESNKTRAQNFFGNGE 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+Y+ D   +   ++ D   +   +   +        K             +  D  
Sbjct: 197 MYLERYIADAHHIEIQLLADTHGNTVYLWERECSVQRRNQK----VIEEAPSPFLDEDTR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K +  +A  A +A+G       +FL D      ++LE+N 
Sbjct: 253 KAMGEVAVQAAKALGYTNAGTVEFLVDDQKN-FYFLEMNT 291


>gi|118477943|ref|YP_895094.1| acetyl-CoA carboxylase biotin carboxylase subunit [Bacillus
           thuringiensis str. Al Hakam]
 gi|118417168|gb|ABK85587.1| propionyl-CoA carboxylase [Bacillus thuringiensis str. Al Hakam]
          Length = 445

 Score = 79.0 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 81/220 (36%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       +   I +             K+ S+  + +  VPV P I  
Sbjct: 77  AIHPGYGLLSENPSFPVRCKEEGIVFIGPSEEIITKMGSKIESRIAMQAADVPVVPGITT 136

Query: 114 N----RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
           N       ++    I  P ++K   GG  +G+ +++ +Q++         ++ ++    +
Sbjct: 137 NIETAEEAIEIAKQIGYPLMLKASAGGGGIGMQLMETEQTLTKAFESNKTRAQNFFGNGE 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+Y+ D   +   ++ D   +   +   +        K             +  D  
Sbjct: 197 MYLERYIADAHHIEIQLLADTHGNTVYLWERECSVQRRNQK----VIEEAPSPFLDEDTR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K +  +A  A +A+G       +FL D      ++LE+N 
Sbjct: 253 KAMGEVAVQAAKALGYTNAGTVEFLVDDQKN-FYFLEMNT 291


>gi|288962004|ref|YP_003452314.1| propionyl-CoA carboxylase alpha chain [Azospirillum sp. B510]
 gi|288914284|dbj|BAI75770.1| propionyl-CoA carboxylase alpha chain [Azospirillum sp. B510]
          Length = 666

 Score = 79.0 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 73/220 (33%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H  +G   E    Q  L    I +      A     DK+ SK++  + GV   P  L 
Sbjct: 77  AVHPGYGFLSEKREFQEALAAAGIAFIGPDAHAIQAMGDKIESKKLAKAAGVSTVPGYLG 136

Query: 113 VNRFTMDS---QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL----DLLQSSSWNHGDQ 165
           V     ++      I  P +IK   GG   G+ V   D+           ++ S    D+
Sbjct: 137 VIANDDEAVMIARDIGYPVMIKASAGGGGKGMRVAWNDEEAREGFRSATNEARSSFADDR 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+Y+     +   ++ D       +   +        K             +     
Sbjct: 197 VFVEKYIQQPRHIEIQLLADGQGTCLYLHERECSIQRRHQK----VIEEAPSPFLDAATR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K +   A     A+  +     +F+ D   R  ++LE+N 
Sbjct: 253 KAMGEQAVALANAVQYKSAGTVEFIVDA-ERNFYFLEMNT 291


>gi|158424699|ref|YP_001525991.1| acetyl-CoA carboxylase [Azorhizobium caulinodans ORS 571]
 gi|158331588|dbj|BAF89073.1| acetyl-CoA carboxylase [Azorhizobium caulinodans ORS 571]
          Length = 448

 Score = 79.0 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 82/220 (37%), Gaps = 18/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---- 109
            +H  +G   E+     IL   ++ +         +  DK+ +K+     G+PV P    
Sbjct: 77  AVHPGYGFLAENARFAEILADHKVHFIGPKPEHIRIMGDKIEAKKTAQKLGIPVVPGSDG 136

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
            I  +         I  P ++K   GG   G+ V      +   L     ++ +    D 
Sbjct: 137 GINSDEEAHRVAAEIGFPVLVKAAAGGGGRGMKVAMTADDLSQALSTARTEAKAAFGDDA 196

Query: 166 LLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+Y V    +   V+GD   +   +        S + ++  +      PA +     
Sbjct: 197 VYLEKYLVTPRHIEIQVLGDGKGNAVHLGERD---CSLQRRHQKVWEEAPSPA-LEAAQR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +E+      A + +   G+   +FL+   + + +++E+N 
Sbjct: 253 QEIGETVAKAMRELKYLGVGTVEFLY--ENGRFYFIEMNT 290


>gi|94499471|ref|ZP_01306008.1| Acetyl/propionyl-CoA carboxylase, alpha subunit [Oceanobacter sp.
           RED65]
 gi|94428225|gb|EAT13198.1| Acetyl/propionyl-CoA carboxylase, alpha subunit [Oceanobacter sp.
           RED65]
          Length = 668

 Score = 79.0 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 71/221 (32%), Gaps = 17/221 (7%)

Query: 56  NVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
           N +H  +G   E+       +   I +      A  L   K  SK  +    VP  P   
Sbjct: 78  NAVHPGYGFLSENTDFCQACQDNNITFIGPDPKAINLMGSKRLSKIEMLKAKVPCIPGYE 137

Query: 113 VNRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS-----SWNHG 163
            +  + +        I  P +IK   GG   G+ ++K +      L  +      ++   
Sbjct: 138 GSDQSDETLFKEAKAIGFPVMIKASAGGGGRGMRIVKNEAEFAAQLKTAKSEALNAFGSD 197

Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           + +L +  ++   +   +  D   +   +            K             +   +
Sbjct: 198 EMILEKAIMEPRHIEIQIFADRHGNCIYLGERDCSVQRRHQK----VVEEAPSPFVSEAM 253

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +   A  A +A    G    +FL D  +   ++LE+N 
Sbjct: 254 RQSMGEAAVNAAKACDYVGAGTVEFLADK-NGDFYFLEMNT 293


>gi|325678689|ref|ZP_08158299.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Ruminococcus
           albus 8]
 gi|324109739|gb|EGC03945.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Ruminococcus
           albus 8]
          Length = 456

 Score = 79.0 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 85/221 (38%), Gaps = 17/221 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC---PS 110
            +H  FG   E+     + E   I +      +  +  DK ++K+ +   GVPV      
Sbjct: 77  AIHPGFGFLSENPAFARMCEKCGIVFIGPRATSIEMLGDKAQAKETMKENGVPVIMGSDG 136

Query: 111 ILVNRFTMDS-QHLISPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSWNHGDQ 165
            + N     +    +  P ++K   GG   GI +++ ++ +         ++ +    D+
Sbjct: 137 AISNIHAAKTLARDLGYPVLVKASAGGGGRGIRIVESEEELEPMMKAARQEALACFGNDE 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           + IE+++ D   +   ++ D   DV  +            K          PA  +  ++
Sbjct: 197 VYIEKFIKDPKHIEIQILADDYGDVIYLGERDCSMQRRRQKVLEEAP---SPASFMTEEL 253

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             ++ R A  A +  G R     +FL D  +   +++E+N 
Sbjct: 254 RAKMGRAAVTAARVCGYRNAGTIEFLVD-SNGDFYFMEMNT 293


>gi|239637587|ref|ZP_04678559.1| biotin carboxylase [Staphylococcus warneri L37603]
 gi|239596805|gb|EEQ79330.1| biotin carboxylase [Staphylococcus warneri L37603]
          Length = 453

 Score = 79.0 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 79/220 (35%), Gaps = 18/220 (8%)

Query: 56  NVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
           N +H  +G   E       +E   I +         +  DK+ ++Q V   GVPV P   
Sbjct: 75  NAIHPGYGFLSESTSFAEAVEDNNIHFIGPNKTTMEMMGDKITARQTVDGAGVPVIPGST 134

Query: 113 VN----RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS----WNHGD 164
                     +    I  P V+K   GG   GI ++K+ + +     ++ S    + + D
Sbjct: 135 DEVKSVEEIEELAKDIGFPVVLKAASGGGGKGIRIVKEPEQLAKAFKEAKSEGQKYFNDD 194

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           ++ +E ++     +   ++GD   +   +            + +         A +  + 
Sbjct: 195 RVYVEAFIPVAKHVEVQIIGDGKDNFVHLGERDCSV----QRKNQKLIEESPCAALTEER 250

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            + +   A    +A   R     +FL    +   +++E+N
Sbjct: 251 RERICEDAVKVAKASQYRSAGTIEFLVTEDAH--YFIEMN 288


>gi|146340460|ref|YP_001205508.1| acetyl-CoA carboxylase biotin carboxylase subunit [Bradyrhizobium
           sp. ORS278]
 gi|146193266|emb|CAL77282.1| acetyl CoA carboxylase, biotin carboxylase subunit [Bradyrhizobium
           sp. ORS278]
          Length = 449

 Score = 79.0 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 79/222 (35%), Gaps = 22/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     IL    + +         L  DK+ +K+     G+PV P    
Sbjct: 77  AVHPGYGFLSENARFAEILSDHNLHFIGPKAEHIRLMGDKIEAKKTAKRLGIPVVPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS-----SWNHGD 164
            +  ++  M     I  P ++K   GG   G+ V   +  + L L  ++     ++    
Sbjct: 137 AVTPDQDAMAIAKAIGFPVLVKAAAGGGGRGMKVAHTEADLQLALTTAANEAKSAFG-DA 195

Query: 165 QLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+Y+     +   V+GD                   L+          P+  + + 
Sbjct: 196 SVYLEKYLQKPRHIEIQVLGDGRGGAI-----HLGERDCSLQRRHQKVWEEGPSPVLDVA 250

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              ++      A Q +   G+   +FL+     + +++E+N 
Sbjct: 251 SRAKIGNTVAKAMQELKYIGVGTIEFLY--EDGEFYFIEMNT 290


>gi|134291002|ref|YP_001114771.1| urea amidolyase related protein [Burkholderia vietnamiensis G4]
 gi|134134191|gb|ABO58516.1| urea amidolyase related protein [Burkholderia vietnamiensis G4]
          Length = 1237

 Score = 79.0 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 31/215 (14%), Positives = 72/215 (33%), Gaps = 14/215 (6%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN---R 115
           +G   E        E   + +             K  ++++ ++ GV + P   +     
Sbjct: 83  YGFLSEHAGFADACEAAGLRFIGPRGEHMRAFGLKHTARELAAAHGVALLPGTGLLGDVA 142

Query: 116 FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGDQLLIEQ 170
             + +   I  P ++K   GG  +G+ + +    +         L ++++ H   + +E+
Sbjct: 143 AALAAADAIGYPVMLKSTAGGGGIGMSLCRDAAQLDAAFDSVVRLGNANFAHAG-VYLEK 201

Query: 171 YVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           +V+    L   + GD       +            K             +       +  
Sbjct: 202 FVEHARHLEVQIFGDGRGGAIALGERDCSVQRRNQK----VIEETPAPDLTAAERDALHA 257

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            A    +A+G       +F+FD  +R  ++LE+N 
Sbjct: 258 SAVRLARAVGYASAGTVEFVFDASARHFYFLEVNT 292


>gi|301054084|ref|YP_003792295.1| acetyl-CoA carboxylase [Bacillus anthracis CI]
 gi|300376253|gb|ADK05157.1| acetyl-CoA carboxylase [Bacillus cereus biovar anthracis str. CI]
          Length = 445

 Score = 79.0 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 81/220 (36%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       +   I +             K+ S+  + +  VPV P I  
Sbjct: 77  AIHPGYGLLSENPSFPVRCKEEGIVFIGPSEEIITKMGSKIESRIAMQAADVPVVPGITT 136

Query: 114 N----RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
           N       ++    I  P ++K   GG  +G+ +++ +Q++         ++ ++    +
Sbjct: 137 NIETAEEAIEIAKQIGYPLMLKASAGGGGIGMQLMETEQTLTKAFESNKTRAQNFFGNGE 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+Y+ D   +   ++ D   +   +   +        K             +  D  
Sbjct: 197 MYLERYIADAHHIEIQLLADTHGNTVYLWERECSVQRRNQK----VIEEAPSPFLDEDTR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K +  +A  A +A+G       +FL D      ++LE+N 
Sbjct: 253 KAMGEVAVQAAKALGYTNAGTVEFLVDDQKN-FYFLEMNT 291


>gi|258451939|ref|ZP_05699955.1| pyruvate carboxylase [Staphylococcus aureus A5948]
 gi|257860154|gb|EEV82986.1| pyruvate carboxylase [Staphylococcus aureus A5948]
          Length = 1150

 Score = 79.0 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 33/221 (14%), Positives = 75/221 (33%), Gaps = 20/221 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+           I +    +    +  DK++++       +PV P    
Sbjct: 80  AIHPGYGFLSENEQFARRCAEEGIKFIGPHLEHLDMFGDKVKARTTAIKADLPVIPGTDG 139

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
            I       +       P +IK   GG   G+ +++++  +     ++ S         +
Sbjct: 140 PIKSYELAKEFAEEAGFPLMIKATSGGGGKGMRIVREESELEDAFHRAKSEAEKSFGNSE 199

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDI 223
           + IE+Y+D    +   V+GD   ++              ++        V P   +   +
Sbjct: 200 VYIERYIDNPKHIEVQVIGDEHGNIV-----HLFERDCSVQRRHQKVVEVAPSVGLSSTL 254

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +   A    + I        +FL      + F++E+N 
Sbjct: 255 RQRICDAAIQLMENIKYVNAGTVEFLV--SGDEFFFIEVNP 293


>gi|291287835|ref|YP_003504651.1| Carbamoyl-phosphate synthase L chain ATP- binding protein
           [Denitrovibrio acetiphilus DSM 12809]
 gi|290884995|gb|ADD68695.1| Carbamoyl-phosphate synthase L chain ATP- binding protein
           [Denitrovibrio acetiphilus DSM 12809]
          Length = 508

 Score = 79.0 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 36/216 (16%), Positives = 78/216 (36%), Gaps = 16/216 (7%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVN 114
           +G + E+       E   + +         L   K  +++ +   GVPV P     I   
Sbjct: 83  YGFYAENADFVKSCEDNGVTFIGPKAEHIILMGSKTGARKAMIEAGVPVVPGTKDAITDV 142

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS-----SWNHGDQLLIE 169
                    +  P ++K + GG   G+ ++  +         +S     ++ +GD + IE
Sbjct: 143 AEAKKVALEVGYPIMLKAVHGGGGKGMRLVNDESEFDSAYRTASSEAQNAFGNGD-MYIE 201

Query: 170 QY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           ++ ++   +   V+GD+  +   +   +        K             I  D   ++ 
Sbjct: 202 KFIIEPHHVEIQVLGDSHGNGIHLFERECSIQRRHQK----VIEEAPSPFINDDTRAKMY 257

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +A  A +AIG       +F+     +  ++LE+N 
Sbjct: 258 DVAVKAVKAIGYESAGTLEFIV-GADQNFYFLEMNT 292


>gi|87160348|ref|YP_493712.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|161509292|ref|YP_001574951.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|221140486|ref|ZP_03564979.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus str.
           JKD6009]
 gi|262048699|ref|ZP_06021581.1| pyruvate carboxylase [Staphylococcus aureus D30]
 gi|262052214|ref|ZP_06024420.1| pyruvate carboxylase [Staphylococcus aureus 930918-3]
 gi|282925298|ref|ZP_06332955.1| pyruvate carboxylase [Staphylococcus aureus A9765]
 gi|284024039|ref|ZP_06378437.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus 132]
 gi|294848104|ref|ZP_06788851.1| pyruvate carboxylase [Staphylococcus aureus A9754]
 gi|304381328|ref|ZP_07363981.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|87126322|gb|ABD20836.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|160368101|gb|ABX29072.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|259159885|gb|EEW44923.1| pyruvate carboxylase [Staphylococcus aureus 930918-3]
 gi|259163155|gb|EEW47715.1| pyruvate carboxylase [Staphylococcus aureus D30]
 gi|269940609|emb|CBI48988.1| putative pyruvate carboxylase [Staphylococcus aureus subsp. aureus
           TW20]
 gi|282592574|gb|EFB97584.1| pyruvate carboxylase [Staphylococcus aureus A9765]
 gi|294824904|gb|EFG41326.1| pyruvate carboxylase [Staphylococcus aureus A9754]
 gi|302750938|gb|ADL65115.1| putative pyruvate carboxylase [Staphylococcus aureus subsp. aureus
           str. JKD6008]
 gi|304340311|gb|EFM06252.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|315196143|gb|EFU26500.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus CGS01]
 gi|320141070|gb|EFW32917.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus MRSA131]
 gi|320143127|gb|EFW34917.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus MRSA177]
          Length = 1150

 Score = 79.0 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 33/221 (14%), Positives = 75/221 (33%), Gaps = 20/221 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+           I +    +    +  DK++++       +PV P    
Sbjct: 80  AIHPGYGFLSENEQFARRCAEEGIKFIGPHLEHLDMFGDKVKARTTAIKADLPVIPGTDG 139

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
            I       +       P +IK   GG   G+ +++++  +     ++ S         +
Sbjct: 140 PIKSYELAKEFAEEAGFPLMIKATSGGGGKGMRIVREESELEDAFHRAKSEAEKSFGNSE 199

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDI 223
           + IE+Y+D    +   V+GD   ++              ++        V P   +   +
Sbjct: 200 VYIERYIDNPKHIEVQVIGDEHGNIV-----HLFERDCSVQRRHQKVVEVAPSVGLSSTL 254

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +   A    + I        +FL      + F++E+N 
Sbjct: 255 RQRICDAAIQLMENIKYVNAGTVEFLV--SGDEFFFIEVNP 293


>gi|86131471|ref|ZP_01050069.1| Biotin carboxylase [Dokdonia donghaensis MED134]
 gi|85817916|gb|EAQ39084.1| Biotin carboxylase [Dokdonia donghaensis MED134]
          Length = 449

 Score = 79.0 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 84/221 (38%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+     I E  +I +  +     +   DK  +K+ + + GVP  P    
Sbjct: 77  AIHPGYGFLSENAKFSKICEEHDIKFIGASAEMISKMGDKATAKETMKAAGVPCVPGSDG 136

Query: 112 LVNRFTMDSQHLI--SPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGD 164
           ++  F    +  I    P ++K   GG   G+  + K++ +           ++++ +  
Sbjct: 137 IIKDFEECQKLAIETGYPVMLKATAGGGGKGMRAVWKEEDLLKAWEGARQESAAAFGNDG 196

Query: 165 QLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
             + E+ ++    +   ++GD++     ++           K     +       +  ++
Sbjct: 197 MYM-EKLIEEPRHIEIQIVGDSTGKACHLSERDCSVQRRHQK----LTEETPSPFMTDEL 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +   A  A + I   G    +FL D   R  +++E+N 
Sbjct: 252 RERMGEAAVKAAEFINYEGAGTVEFLVDKH-RNFYFMEMNT 291


>gi|288560297|ref|YP_003423783.1| D-alanine-D-alanine ligase [Methanobrevibacter ruminantium M1]
 gi|288543007|gb|ADC46891.1| D-alanine-D-alanine ligase [Methanobrevibacter ruminantium M1]
          Length = 379

 Score = 79.0 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 48/277 (17%), Positives = 108/277 (38%), Gaps = 39/277 (14%)

Query: 28  DAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELL-------EIPYT 80
            + + +    +D+ + + +   K D    ++    G D  ++ +  +         IP  
Sbjct: 40  ASKYYIVPRGMDKPMEVAIEE-KVDAIIPLI----GIDPPLKDLAIMKEKIEKENNIPVI 94

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI------SPPYVIKPLK 134
            S   A  ++ DK+++K+   S G+ V  + ++N+    ++           P V+K  +
Sbjct: 95  SSNFNAVDIASDKIKTKEFFKSIGLNVPEAKVLNKDDFSNEGEFLEKLGFQFPIVLKQGE 154

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194
           G     I +  + + +         +   +Q L+E +++G E++  V+G     +  + V
Sbjct: 155 GQGGKDICITSQFEDVLQ------YFESFNQALVENFIEGAEVSIEVIGWNGEYLPLVPV 208

Query: 195 PKSDFYSYELKYSSL-NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
            K       L+           P        +E ++LA      +G  G    D ++   
Sbjct: 209 YKG---DTSLEGIHPIKRLRYGPCDFEAIDNEEFRQLAKKIAVNLGSEGTIDMDLIYSRE 265

Query: 254 SRKVFWLEINVQP-----------GMTPVSIFPEMAA 279
             KV+ +EIN +P           G++P+ +  ++AA
Sbjct: 266 ENKVYAIEINTRPSGTRYLSYATTGLSPLGLLVDIAA 302


>gi|172036953|ref|YP_001803454.1| carbamoyl phosphate synthase large subunit [Cyanothece sp. ATCC
           51142]
 gi|171698407|gb|ACB51388.1| carbamoyl-phosphate synthase, large subunit [Cyanothece sp. ATCC
           51142]
          Length = 1081

 Score = 79.0 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 52/279 (18%), Positives = 103/279 (36%), Gaps = 36/279 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLA------------FN 56
           SG     AL + G++V  +         D + +    +  L PD+               
Sbjct: 29  SGTQACKALREEGYEVVLVNSNPASIMTDPEMANRTYIEPLTPDMVEKVIAKERPNALLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G    +  V      +L+   +    + + A  ++ D+   K  ++  GVPVCPS  
Sbjct: 89  TMGGQTALNVAVALAKNGVLDKYNVELIGAKLPAIEMAEDRELFKDAMAKIGVPVCPSGI 148

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
              +       + + S P +I+P       G  +    +            +   Q+L+E
Sbjct: 149 ASTLKEAKAIGEEIGSYPLIIRPAFTLGGTGGGIAYNQEEFEEMAQFGIDASPVSQILVE 208

Query: 170 QYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKE 226
           + + G  E    VM D + +V  I   ++    ++       +S  V PA+ +    Y+ 
Sbjct: 209 KSLLGWKEYELEVMRDLADNVVIICSIEN----FDPMGVHTGDSITVAPAQTLTDKEYQR 264

Query: 227 VQRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           ++  +    + IG   G S   F  +P + +V  +E+N 
Sbjct: 265 LRDYSQAIIREIGVETGGSNIQFSVNPTNGEVIVIEMNP 303



 Score = 52.0 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/204 (11%), Positives = 77/204 (37%), Gaps = 11/204 (5%)

Query: 68  VQAILELLEIPYT----HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQ 121
           +Q  L+  + P       +   +   + D+ R ++++ +  +   P+ +   +   +   
Sbjct: 653 LQTYLDSPQCPVQTKIWGTSPDSIDTAEDRERFEKILHNLDIKQPPNGISRSYEESLAVS 712

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCG 180
             I  P V++P        + ++  D+ +   +  +        +LI+++++  IE+   
Sbjct: 713 SRIGYPVVVRPSYVLGGRAMEIVYSDEELERYMTYAVQVEPDHPILIDKFLENAIEVDVD 772

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
            + D +  V    + +    +    +S  ++  V    +   + + ++        ++  
Sbjct: 773 ALCDTTGKVVIGGIMEHIEQAGV--HSGDSACSVPYTTLSKSVIETIRTWTVALANSLKV 830

Query: 241 RGISRSDFLFDPLSRKVFWLEINV 264
            G+   +  +     +V+ LE N 
Sbjct: 831 VGL--MNIQYAVQGEQVYILEANP 852


>gi|168703983|ref|ZP_02736260.1| carbamoyl-phosphate synthase (glutamine-hydrolyzing) large chain
           [Gemmata obscuriglobus UQM 2246]
          Length = 1114

 Score = 79.0 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 54/278 (19%), Positives = 99/278 (35%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+ V  +         D +              V  ++A  +PD    
Sbjct: 29  SGTQACKALREEGYTVVLVNSNPATIMTDPETADRTYIEPITWEVVEKIIAAERPDALLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G    +  +    + +L    +    +       + D+ R K  V   GV V  S++
Sbjct: 89  TLGGQTALNTAMDLFKRGVLAKYGVEMIGADADVIDKAEDRQRFKDAVLKIGVAVPKSVV 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           V+     M +   I  P V++P       G  +          +    + +   ++L+E+
Sbjct: 149 VHTLEEAMRALDEIGLPCVLRPSFTMGGSGGGIAYNRDEYRDIITHGLALSPTTEVLVEE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            V G  E    VM D + +V  I   ++ D           +S  V PA+ +    Y+ +
Sbjct: 209 SVIGWKEYELEVMRDKADNVVIICSIENLDPMGVHT----GDSITVAPAQTLSDKEYQRM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  A    + IG   G S   F  +P   ++  +E+N 
Sbjct: 265 RDKAKDIIREIGVETGGSNIQFAINPADGRMIVIEMNP 302



 Score = 65.1 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 43/296 (14%), Positives = 105/296 (35%), Gaps = 40/296 (13%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAI---- 71
           AL   G++V  +         D D S  L    L P+   N +H     +G++       
Sbjct: 612 ALRARGYEVIMVNSNPETVSTDYDTSDHLFFEPLTPEDVIN-IHERMKPEGVIVQFGGQT 670

Query: 72  -------LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--SILVNRFTMDSQH 122
                  L+ + +P   + + +  ++ ++ R  ++V+  G+      + +     +    
Sbjct: 671 PLNLATPLQSMGVPIIGTSVDSIDIAENRERFARLVTDLGLLQPANGTAVDEAQALRVAR 730

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-WNHGDQLLIEQYVD-GIELTCG 180
            I  P +++P        + ++  +  +   + +     +    +LI+Q+++   E+   
Sbjct: 731 KIGFPILVRPSFVLGGRDMKIVYNEDELTAYIRRVEPDLSRDRPVLIDQFLENATEVDVD 790

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
            + D +  V    +   +       +S  ++  + P  +P  +  E++        A+  
Sbjct: 791 CLSDGTRTVIGGVMQHIEEAGI---HSGDSACVIPPYSLPATVINEIKVQTRKLAAALNV 847

Query: 241 RGISRSDFLFDPLSR--------KVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           +G+    F    +          KV+ LE N +   T     P ++   G     L
Sbjct: 848 KGLMNIQFAVAGIRGGVTATEAAKVYILEANPRASRT----IPFVSKATGVPLARL 899


>gi|256752200|ref|ZP_05493065.1| carbamoyl-phosphate synthase, large subunit [Thermoanaerobacter
           ethanolicus CCSD1]
 gi|256748928|gb|EEU61967.1| carbamoyl-phosphate synthase, large subunit [Thermoanaerobacter
           ethanolicus CCSD1]
          Length = 1072

 Score = 79.0 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 49/286 (17%), Positives = 103/286 (36%), Gaps = 33/286 (11%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI---------DVD------------RSVGLV 45
           G ++E + S   G     +L++ G +V  +         D D              V  +
Sbjct: 21  GQAAEFDYS---GTQACKSLKEEGVQVVLVNNNPATIMTDTDIADIVYIENPTVSVVEKI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +A  +P+     L G  G +  V    + IL+   +    +   +   + D+   K+ + 
Sbjct: 78  IAKERPEGILATLGGQTGLNLAVKLKEEGILDKYNVKLLGTSFESIKTAEDRELFKRKMQ 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G PV  S+ V      +        P +I+P       G  +   D+ +   +     
Sbjct: 138 EIGEPVAESVTVTNIEDALKFAKNYGYPLIIRPAYTLGGTGGGIAHNDEELISIVDLGLK 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   ++L+E+ + G  E+   VM DA+ +   I     + +     ++  +        
Sbjct: 198 KSMVGEVLVEKSLYGWKEIEFEVMRDAADNCITIC--SMENFDPVGVHTGDSIVVAPTQT 255

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +    Y+ ++  +    +A+   G     F  DP S K + +E+N 
Sbjct: 256 LSDYEYQMLRSASIKIIKALKIEGGCNIQFALDPKSHKYYVIEVNP 301



 Score = 71.3 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 32/215 (14%), Positives = 74/215 (34%), Gaps = 13/215 (6%)

Query: 77  IPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--SILVNRFTMDSQHLISPPYVIKPLK 134
           +    +   +  +S D+ +  +++    +        L      D    +  P +I+P  
Sbjct: 651 VKILGTSYESIDISEDREKFSKLLRELNINQPKGDYALTVEDAKDIALKLGFPLLIRPSY 710

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194
                 +  +   Q I   +  ++  + G  +LI++Y+DG E+    + D    +    +
Sbjct: 711 VIGGQSMEKVNTLQEIIDYVSNATQVSPGRPILIDKYIDGREVEVDAVSDGECVLIPGIM 770

Query: 195 PKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
              +           +S  + PA+ +       +        +A+  +G+    F     
Sbjct: 771 EHIERAGVHS----GDSFSIYPARNLSEREINTIIEYTERISKALNVKGLINIQFAVKE- 825

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
              V+ LE+N +   T     P M+   G    +L
Sbjct: 826 -GTVYVLEVNPRASRT----VPIMSKATGVPMVKL 855


>gi|188989941|ref|YP_001901951.1| acetyl-CoA carboxylase biotin carboxylase subunit [Xanthomonas
           campestris pv. campestris str. B100]
 gi|167731701|emb|CAP49879.1| accC [Xanthomonas campestris pv. campestris]
          Length = 455

 Score = 79.0 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 41/225 (18%), Positives = 83/225 (36%), Gaps = 27/225 (12%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+      +E     +         L  DK+ + + + + GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAERVEESGFIFIGPKADTIRLMGDKVEAIRAMKAAGVPCVPGSGG 136

Query: 111 -----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWN 161
                I+ N         I  P +IK   GG   G+ V+  + ++   +     ++ +  
Sbjct: 137 PLGDDIVAN---TKIAREIGYPVIIKAAGGGGGRGMRVVHSEAALKAAIETTKSEAKAAF 193

Query: 162 HGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-I 219
             DQ+ +E++++    +   V+ D   +   +            K          PA  I
Sbjct: 194 SNDQVYMEKFLENPRHVEIQVLADGQGNAIHLGERDCSMQRRHQK-----VVEEAPAPGI 248

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             ++  E+ ++   A   IG RG    +FLF     + +++E+N 
Sbjct: 249 SEELRAEIGKVCVDACIRIGYRGAGTFEFLF--EGGRFYFIEMNT 291


>gi|79329027|ref|NP_001031968.1| CAC2; acetyl-CoA carboxylase/ biotin carboxylase [Arabidopsis
           thaliana]
 gi|332006574|gb|AED93957.1| biotin carboxylase [Arabidopsis thaliana]
          Length = 499

 Score = 79.0 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 80/220 (36%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
           +LH  +G   E+ L   +     I +      +  +  DK  +++ + + GVP  P    
Sbjct: 149 MLHPGYGFLSENALFVEMCRDHGINFIGPNPDSIRVMGDKATARETMKNAGVPTVPGSDG 208

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS----IPLDLLQSSSWNHGDQ 165
            +      +   + I  P +IK   GG   G+ + K+       +     ++++    D 
Sbjct: 209 LLQSTEEAVRVANEIGFPVMIKATAGGGGRGMRLAKEPGEFVKLLQQAKSEAAAAFGNDG 268

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             +E++V +   +   V+ D   +V               K             +  ++ 
Sbjct: 269 CYLEKFVQNPRHIEFQVLADKFGNVVHFGERDCSIQRRNQKLL----EEAPSPALTAELR 324

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K +   A  A  +IG  G+   +FL D      +++E+N 
Sbjct: 325 KAMGDAAVAAAASIGYIGVGTVEFLLDER-GSFYFMEMNT 363


>gi|212639697|ref|YP_002316217.1| pyruvate carboxylase [Anoxybacillus flavithermus WK1]
 gi|212561177|gb|ACJ34232.1| Pyruvate carboxylase [Anoxybacillus flavithermus WK1]
          Length = 1146

 Score = 79.0 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 29/222 (13%), Positives = 79/222 (35%), Gaps = 22/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+       E   I +         +  DK++++      G+PV P    
Sbjct: 80  AIHPGYGFLSENIEFAKRCEEEGIIFIGPRQEHLDMFGDKVKARHQAKQAGIPVIPGSDG 139

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS-----SSWNHGD 164
            +      +        P +IK   GG   G+ +++    +     ++     +++   D
Sbjct: 140 PVQSLEDVVRFGETYGYPMIIKAALGGGGRGMRIVRSQAEVKEAYERAKSEAKAAFGSDD 199

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLD 222
            + +E+ ++    +   ++GDA  ++  +           ++        V P   +  +
Sbjct: 200 -VYVEKLIENPKHIEVQILGDAYGNIVHLY-----DRDCSVQRRHQKVVEVAPSVSLSKE 253

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +++   A    + +        +FL      + +++E+N 
Sbjct: 254 LREDICEAAVKLMKNVQYVNAGTVEFLV--SGDEFYFIEVNP 293


>gi|170782695|ref|YP_001711029.1| urea carboxylase [Clavibacter michiganensis subsp. sepedonicus]
 gi|169157265|emb|CAQ02450.1| urea carboxylase [Clavibacter michiganensis subsp. sepedonicus]
          Length = 1209

 Score = 79.0 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 42/243 (17%), Positives = 88/243 (36%), Gaps = 22/243 (9%)

Query: 34  SQIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALS 90
           S +D+DR + +  A          +H  +G   E       +E   + +           
Sbjct: 68  SYLDIDRIIEVAQAACAG-----AIHPGYGFISESAAFARAVEEAGMVFVGPTWQQIEAF 122

Query: 91  MDKMRSKQVVSSCGVPVCPS---ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147
             K  ++ +   CGVP  P    +       ++   +  P ++K   GG  +GI+    +
Sbjct: 123 GPKHTARAIAMECGVPCVPGSGLVASEDAAAEAAAAVGYPVMVKASGGGGGVGIVTCADE 182

Query: 148 QSIPLDLL----QSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSY 202
             +          +++      + +E+++     L   V GD + +V  +          
Sbjct: 183 TQLRAAYASVTRLAAANFATPGVFVERFIARARHLEVQVFGDGAGEVAIL-----GDRDC 237

Query: 203 ELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
            L+          PA  +P  + + + R A    + +G R     +F++D  +  VF+LE
Sbjct: 238 SLQRRHQKVVEEAPAPHLPEHVRETMHRSAAALARHVGYRSAGTVEFVYDDRTEDVFFLE 297

Query: 262 INV 264
           +N 
Sbjct: 298 MNT 300


>gi|151221191|ref|YP_001332013.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus str.
           Newman]
 gi|150373991|dbj|BAF67251.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus str.
           Newman]
          Length = 1156

 Score = 79.0 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 33/221 (14%), Positives = 75/221 (33%), Gaps = 20/221 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+           I +    +    +  DK++++       +PV P    
Sbjct: 86  AIHPGYGFLSENEQFARRCAEEGIKFIGPHLEHLDMFGDKVKARTTAIKADLPVIPGTDG 145

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
            I       +       P +IK   GG   G+ +++++  +     ++ S         +
Sbjct: 146 PIKSYELAKEFAEEAGFPLMIKATSGGGGKGMRIVREESELEDAFHRAKSEAEKSFGNSE 205

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDI 223
           + IE+Y+D    +   V+GD   ++              ++        V P   +   +
Sbjct: 206 VYIERYIDNPKHIEVQVIGDEHGNIV-----HLFERDCSVQRRHQKVVEVAPSVGLSSTL 260

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +   A    + I        +FL      + F++E+N 
Sbjct: 261 RQRICDAAIQLMENIKYVNAGTVEFLV--SGDEFFFIEVNP 299


>gi|114778757|ref|ZP_01453567.1| acetyl-CoA carboxylase [Mariprofundus ferrooxydans PV-1]
 gi|114551008|gb|EAU53571.1| acetyl-CoA carboxylase [Mariprofundus ferrooxydans PV-1]
          Length = 449

 Score = 79.0 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 80/220 (36%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     I+    + +      +  +  DK+ +KQ +    VP+ P    
Sbjct: 77  AIHPGYGFLAENASFAEIVSESGLVWIGPTPESMRIMGDKVAAKQKMDEANVPLVPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGDQ 165
            +               P ++K   GG   G+ V+  + S+P        ++ +    D 
Sbjct: 137 AVTTVDEAKAIAKAAGFPVIVKASAGGGGRGMKVVHSEASLPNAFSMCQSEAGAAFGDDT 196

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+Y++    +   V+GD   ++  +   +        K             +  +  
Sbjct: 197 VFIEKYLEEPRHIEVQVLGDKHGNIVHLFERECSMQRNNQKVL----EEAPSPFVDDETR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            ++      A +A+   G    +FL +P  +  +++E+N 
Sbjct: 253 AKICAAGVAAARAVDYVGAGTIEFLMNP-DKSFYFIEMNT 291


>gi|284161775|ref|YP_003400398.1| carbamoyl-phosphate synthase, large subunit [Archaeoglobus
           profundus DSM 5631]
 gi|284011772|gb|ADB57725.1| carbamoyl-phosphate synthase, large subunit [Archaeoglobus
           profundus DSM 5631]
          Length = 1091

 Score = 79.0 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 55/290 (18%), Positives = 109/290 (37%), Gaps = 40/290 (13%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLA--- 54
           G ++E + S   G     AL++ G++V  +         D D +  + +  L  D+    
Sbjct: 21  GQAAEFDYS---GSQACKALKEEGYEVVLVNSNPATIMTDPDMADRVYIEPLTADVVAKI 77

Query: 55  ---------FNVLHGNFG-----EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
                       L G        E G +  +L+   +    + + A   + D+   K+ +
Sbjct: 78  IERETPDALLPTLGGQTALNLAVELGEM-GVLDEYGVELIGAKLDAIKKAEDRELFKECM 136

Query: 101 SSCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS 158
              G+ V  S +       +     I  P V++P       G  +    + +   + +  
Sbjct: 137 RKIGLDVPRSDIARDVDEALAIAEEIGYPVVVRPAFTLGGTGGGIAYNKKELREIVEKGL 196

Query: 159 SWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLP 216
             +   Q+LIE+ V G  E    VM D + +V  I   ++    ++       +S  V P
Sbjct: 197 KLSLIHQVLIEEGVIGWKEYELEVMRDLADNVVIICSIEN----FDPMGIHTGDSITVAP 252

Query: 217 AK-IPLDIYKEVQRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           A+ +    Y++++  A    +AIG   G S   F   P + ++  +E+N 
Sbjct: 253 AQTLSDVEYQQLRDAAIKIIRAIGVETGGSNIQFAVHPENGRIVAIEMNP 302



 Score = 68.2 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 40/289 (13%), Positives = 97/289 (33%), Gaps = 31/289 (10%)

Query: 26  LEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ------- 69
           L++ G++   +         D D S  L    +  +   N+      E  +VQ       
Sbjct: 592 LKEEGYETIMVNCNPETVSTDYDTSDRLYFEPITHEDVMNIYDNEKPEGVIVQFGGQTPL 651

Query: 70  ---AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLI 124
                LE        + + +   + D+ R  +++   G+P     + +      +    I
Sbjct: 652 NIAKDLEESGAKILGTSVDSIDFAEDRERFSKLLEELGIPQPEHGIAHSVEEAKEVARKI 711

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMG 183
             P +++P        + ++  D+ +   + ++   +    +LI++++ D +E     + 
Sbjct: 712 GYPVLVRPSYVLGGRAMEIVYDDEELERYVREAVEVSPEKPILIDKFLEDAVEAEVDALC 771

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D    V    +   +       +S  ++  + P  +P  I   +         A+   G+
Sbjct: 772 DGEEVVIGGILEHIEEAGV---HSGDSACVIPPISLPKHIIDTIIDYTRKIALALKVVGL 828

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
               F        V+ LE N +   T     P ++   G    ++   +
Sbjct: 829 INIQFAI--KDNVVYVLEANPRASRT----VPFISKATGLPLAKIAAKL 871


>gi|190894441|ref|YP_001984734.1| putative urea amidolyase [Rhizobium etli CIAT 652]
 gi|190700102|gb|ACE94184.1| putative urea amidolyase protein [Rhizobium etli CIAT 652]
          Length = 1179

 Score = 79.0 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 80/220 (36%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      L    I +        +    K  ++++  + GVP+ P   +
Sbjct: 77  AVHPGYGFLSENIGFAERLAAEGIAFIGPRPEHLSAFGLKHTARELAKASGVPLLPGSGL 136

Query: 114 NRFTMDS---QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQL 166
                ++      I  P ++K   GG  +G+ +    +S+          + +     ++
Sbjct: 137 LSGADEALSAAEAIGYPVMLKSTAGGGGIGMQLCADPESLKASFESVQRTARASFGDARV 196

Query: 167 LIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIY 224
            IE++V D   +   + GD   +V  +           L+  +       PA  +     
Sbjct: 197 YIERFVADARHVEVQIFGDGRGNVIALGE-----RDCSLQRRNQKVVEETPAPGLSAATR 251

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             + + A     ++        +F++DPL  + ++LE+N 
Sbjct: 252 GRLHKAAVDLGASVSYESAGTVEFIYDPLREEFYFLEVNT 291


>gi|237809634|ref|YP_002894074.1| urea carboxylase [Tolumonas auensis DSM 9187]
 gi|237501895|gb|ACQ94488.1| urea carboxylase [Tolumonas auensis DSM 9187]
          Length = 1200

 Score = 79.0 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 34/232 (14%), Positives = 79/232 (34%), Gaps = 29/232 (12%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---QHLISPPYVIKP 132
            + +             K  ++ +  +  VP+ P   +     D+      I  P ++K 
Sbjct: 99  GLVFLGPTPEQMVAFGLKHEARALAEAAQVPLLPGTGLLSSLDDALVEAARIGYPVMLKS 158

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG----DQLLIEQYVD-GIELTCGVMGDASL 187
             GG  +G+      + +          +        + +E++++    +   + GD   
Sbjct: 159 TAGGGGIGMQRCFSAEELTSAYASVKRLSENNFSNGGMFLEKFIENARHIEVQMFGDGQG 218

Query: 188 DVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRS 246
            V  I            +  +       PA  +  D+ + +Q  A    Q +  R     
Sbjct: 219 KVIAIGE-----RDCSAQRRNQKVIEECPAPNLSDDVRQALQATAVQLGQQVCYRSAGTV 273

Query: 247 DFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS---FR-ELLLWMVE 294
           ++++D LS + ++LE+N             +    G +   +  +L+ WM+E
Sbjct: 274 EYVYDDLSGQFYFLEVNT-----------RLQVEHGVTEQVYGVDLVRWMIE 314


>gi|119478547|ref|ZP_01618490.1| acetyl-CoA carboxylase multifunctional enzyme accADC, carboxyl
            transferase subunit alpha/carboxyl transferase subunit
            [marine gamma proteobacterium HTCC2143]
 gi|119448451|gb|EAW29700.1| acetyl-CoA carboxylase multifunctional enzyme accADC, carboxyl
            transferase subunit alpha/carboxyl transferase subunit
            [marine gamma proteobacterium HTCC2143]
          Length = 1526

 Score = 79.0 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 33/221 (14%), Positives = 83/221 (37%), Gaps = 16/221 (7%)

Query: 56   NVLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
              LH   G   E+    ++     I +      +     +K  + Q V +  VPV P   
Sbjct: 1023 PALHPGIGFLSENPNFASLCVNNGINFIGPSADSMMTMGNKSNAIQTVQANNVPVVPGSH 1082

Query: 111  --ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
              +      ++  + I  P ++K + GG   GI V++    +         ++ +     
Sbjct: 1083 GILASCEQAINIANDIGYPVLLKAVHGGGGKGIQVVRSQDEMLKYYGMISSEARAAFGNG 1142

Query: 165  QLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
             L +E++V     +   ++ D+  +   + +          K    + + +    +P ++
Sbjct: 1143 DLYLEKFVTSMRHIEVQLLRDSHGNSRVLGMRDCSVQRNNQKVVEESGSTM----LPEEL 1198

Query: 224  YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             ++V         A+   G    +F+++  + +V+++E+N 
Sbjct: 1199 KQKVFDYTLSIAGAVDYTGAGTVEFIYNLDANEVYFMEMNT 1239


>gi|146296939|ref|YP_001180710.1| carbamoyl phosphate synthase large subunit [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145410515|gb|ABP67519.1| carbamoyl-phosphate synthase large subunit [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 1075

 Score = 79.0 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 55/289 (19%), Positives = 104/289 (35%), Gaps = 39/289 (13%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQID-------VDRS--------------VGLV 45
           G ++E + S   G     AL++ G +V  I+        D++              +  +
Sbjct: 21  GQAAEFDYS---GSQACKALKEEGIEVVLINSNPATIMTDKTMADSIYIEPITCEIIERI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   K D     L G  G +  V+     IL+   +    + I A   + D+   KQ++ 
Sbjct: 78  IQKEKVDSILPTLGGQTGLNTAVELYKSGILDKYNVKVIGTNIEAIEFAEDRQLFKQLMI 137

Query: 102 SCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G PV PS +VN     +     I  P +I+P       G  +   +        +  S
Sbjct: 138 KIGEPVVPSEVVNCVEDGLAFAKKIGFPVIIRPAYTLGGTGGGIANNEGEFLEIARRGLS 197

Query: 160 WNHGDQLLIEQYVDG---IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216
           ++   Q+L+E+ + G   IE       +  L              +     + +S  V P
Sbjct: 198 YSPVHQILVEKSIKGWKEIEYEVMRDSNGCLITVCNMENIDPVGIH-----TGDSIVVAP 252

Query: 217 AK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           ++ +    Y+ ++  A     A+   G     F  +P S +   +E+N 
Sbjct: 253 SQTLSDKEYQMLRSSALKIIDALKIEGGCNVQFALNPDSFEYAVIEVNP 301



 Score = 76.3 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 36/229 (15%), Positives = 89/229 (38%), Gaps = 19/229 (8%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI--LVNRFTMDSQHLISPPYVIKPL 133
            I    +      ++ D+ R  ++++   +   P       +  +   + +  P +++P 
Sbjct: 654 GIKIFGTSAEGIDIAEDRERFDKILNKLNIKRPPGFTCYTLQEALRIANSLGYPVLVRPS 713

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
                 G+ +   D  I   L  + + N    +LI++Y+ G E+    + D      +I 
Sbjct: 714 YVLGGQGMKIAFDDDDIVEMLSYAKNLNSHP-ILIDKYIVGKEIEVDAISDGE----DIL 768

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
           +P    +       S +S  + PA+ I   I + +        + + C+G+    F+   
Sbjct: 769 IPGIMEHIERAGVHSGDSISLYPARNISKYIEERIVEYTLKIARELECKGLMNVQFIV-- 826

Query: 253 LSRKVFWLEIN-----VQPGMTPVSIFPEMAAYA----GYSFRELLLWM 292
            + +++ +E+N       P ++ V+  P +        GY  ++L+  +
Sbjct: 827 QNEELYVIEVNPRGSRTVPFLSKVTGVPMVELATMVSLGYRLKDLVTTI 875


>gi|251771868|gb|EES52442.1| carbamoyl-phosphate synthase, large subunit [Leptospirillum
           ferrodiazotrophum]
          Length = 1080

 Score = 79.0 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 55/278 (19%), Positives = 102/278 (36%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG      L++ G++VS +         D D              V  VL   +PD    
Sbjct: 29  SGTQAVKTLKEEGYRVSLVNSNPATIMTDPDLADATYMVPLTVEKVSEVLERERPDAILP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  V      IL+ L I    S +    ++ D+ + K+ ++  G+ V  S L
Sbjct: 89  TMGGQTALNLAVALARDGILDRLGIVLLGSSLETIEMAEDRGKFKEAMARIGLSVPQSFL 148

Query: 113 VNR--FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           V      M++   +S P +I+P       G  V+   +     +L     +   ++L+E+
Sbjct: 149 VRSLPEAMETLSSLSFPLLIRPSFTLGGTGQSVVYNREEFSRAVLFGIDQSPIGEILVEE 208

Query: 171 YVDG-IELTCGVMGDASL-DVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D     +   ++   D           +S  V PA  +    Y+ +
Sbjct: 209 SLIGWKEFELEVVRDKKDNAIIVCSIENVDPMGVHT----GDSITVAPAMTLTDREYQRL 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  A    + +G   G S   F  +P   +   +E+N 
Sbjct: 265 RDAAIDILREVGVETGGSNVQFAVNPADGRFVVIEMNP 302



 Score = 64.4 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 36/224 (16%), Positives = 86/224 (38%), Gaps = 12/224 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI--SPPYV 129
           L    IP   +    + L+ D+ R ++++   G+    S LV+R       ++    P +
Sbjct: 653 LSEAGIPIMGTSFEMTDLAEDRERFRELIDRLGLLQPRSGLVHRIEEALPEILRIGFPVL 712

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++   +       + +S +    LL++ +  D  E+    +GD    
Sbjct: 713 VRPSYVLGGEAMEILYDLEDWQEYERRIASLDFRFPLLVDSFFSDATEVDVDALGDGREI 772

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           +    +   +       +S  ++  + P  +   +  E+ R   +  +A+  +G+    F
Sbjct: 773 MVGGILEHVEQAGI---HSGDSACFIPPRSLSETVLAEICRQTRVLGEALSVKGLMNIQF 829

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
                +  V+ LE+N +   T     P  +   G S  +L + +
Sbjct: 830 AV--QNETVYVLEVNPRASRT----VPFTSKAIGLSLPKLAMRI 867


>gi|227832378|ref|YP_002834085.1| pyruvate carboxylase [Corynebacterium aurimucosum ATCC 700975]
 gi|262183761|ref|ZP_06043182.1| pyruvate carboxylase [Corynebacterium aurimucosum ATCC 700975]
 gi|227453394|gb|ACP32147.1| pyruvate carboxylase [Corynebacterium aurimucosum ATCC 700975]
          Length = 1143

 Score = 79.0 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 36/240 (15%), Positives = 77/240 (32%), Gaps = 19/240 (7%)

Query: 35  QIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKM 94
            +D+D  +         D  +   +G   E   +        I +         L+ DK 
Sbjct: 68  YLDIDEVIRAA-KKSGADAIYPG-YGFLSERADLARACRDNGIKFIGPTPETLDLTGDKA 125

Query: 95  RSKQVVSSCGVPVC----PSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150
            +       G+P      PS  V++   +     + P  +K + GG   G+  I+ +  +
Sbjct: 126 AAVAAAQEAGLPTLKDSKPSTDVDKL-AEYAKDFNFPVFVKAVAGGGGRGMRFIENEAEL 184

Query: 151 PLD-----LLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205
                       +++  G+  L    +    +   ++ D+  +V  +           ++
Sbjct: 185 KTKCAEASREAEAAFGDGNVYLETAVIRPQHIEVQILADSQGNVMHLYE-----RDCSVQ 239

Query: 206 YSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
                   + PA  +  ++   +   A    + I   G    +FL D     VF  E+N 
Sbjct: 240 RRHQKVVEIAPAPTLDPELRDRICADAVKFCEHINYEGAGTVEFLVDEKGNHVFI-EMNP 298


>gi|227511346|ref|ZP_03941395.1| carbamoyl-phosphate synthase (glutamine-hydrolyzing) [Lactobacillus
           buchneri ATCC 11577]
 gi|227085396|gb|EEI20708.1| carbamoyl-phosphate synthase (glutamine-hydrolyzing) [Lactobacillus
           buchneri ATCC 11577]
          Length = 1021

 Score = 79.0 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 50/273 (18%), Positives = 96/273 (35%), Gaps = 31/273 (11%)

Query: 20  KACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFNVL 58
           +AC S L + G+ V  ++ +                      S+  +L    PD     L
Sbjct: 32  QACLS-LREEGYSVILVNSNPATIMTDDEIADKVYLDPLTVPSLKKILEKEHPDAILPTL 90

Query: 59  HGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
            G  G +  V+     IL+ L I    + +     + D+ + K ++     P+  S  V 
Sbjct: 91  GGQTGLNLAVELAKDGILDKLGIELLGTSLHTINQAEDREQFKDLMKELHQPIPDSKTVY 150

Query: 115 RFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                +D  H I  P +I+P       G  +   D  +   L +  + +   + LIE+ +
Sbjct: 151 NLEDGLDFAHEIDYPVIIRPAYTLGGTGGGIAHNDDEMKTILNRGLTMSPSTECLIEKSI 210

Query: 173 DG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
            G  E+   VM D     + I V   + +     ++  +        +    Y+ ++  +
Sbjct: 211 AGYKEIEFEVMRDHHG--SSIIVTGMENFDPVGVHTGDSIVFAPTQTLTDKEYQRLRDAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
                A+   G        DP S   + +E+N 
Sbjct: 269 LTIVNALKIEGGCNVQLAQDPTSENYYVIEVNP 301



 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 45/296 (15%), Positives = 101/296 (34%), Gaps = 37/296 (12%)

Query: 22  CASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH-----GNFGEDGL 67
           C  A++ AG     I         D   S  L    L  D   NV++     G   E G 
Sbjct: 579 CVKAIQAAGKNAIIINNNPETVSTDFSISDKLYFEPLDIDSVMNVINLEKTMGVIVEFGG 638

Query: 68  VQAI-----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGV--PVCPSILVNRFTMDS 120
             AI     L    +    + +     + ++   + ++    +  P   + +        
Sbjct: 639 QTAINLTEELTKHGVQILGTSMHGIEETENRHDFEDLLIDQNIAHPQGDTAMNGHEAHAI 698

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            + +  P +++P       G+ V+   + +   L+ +   + G  +LI+QY+ G E    
Sbjct: 699 ANKLGYPVLVRPSFVLGGKGMAVVHNSEELDEYLVPALKASAGQPILIDQYIPGTECEVD 758

Query: 181 VMGDAS---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           ++ D     +      +  S  +S        +     P  +  +  +++  +A    + 
Sbjct: 759 ILSDGKDVFVPGIMEHLEGSGIHS------GDSIAMYPPQHLTDEQKEKIVSIATKIGKK 812

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +   G+    F+    +  V+ +E+N +   T     P M+        +L   ++
Sbjct: 813 VHAVGMMNIQFI---CANDVYVIEVNPRASRT----VPFMSKITKMHLAQLATQLI 861


>gi|220931470|ref|YP_002508378.1| acetyl-CoA carboxylase, biotin carboxylase [Halothermothrix orenii
           H 168]
 gi|219992780|gb|ACL69383.1| acetyl-CoA carboxylase, biotin carboxylase [Halothermothrix orenii
           H 168]
          Length = 451

 Score = 79.0 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 83/221 (37%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+     + E   I +        +L  DK ++++ +   GVPV P    
Sbjct: 79  AIHPGYGFLSENAHFAEVCESSGIKFIGPNSGVISLMGDKAKARETMKKAGVPVVPGTED 138

Query: 112 ---LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL----DLLQSSSWNHGD 164
               V++ T++    I  P +IK   GG   G+ + +  + +         ++ +     
Sbjct: 139 GLDNVDK-TLEVAEEIGYPVIIKAAAGGGGKGMRIAQNPRDLKKSIQTAQSEARAAFGDA 197

Query: 165 QLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            + +E+YV+    +   ++ D   +V  +            K             +  ++
Sbjct: 198 TVYLEKYVEEPRHIEFQILADEHGNVIHLGERDCSIQRRHQKIL----EEAPSPVLSGEL 253

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +++   A  A +A+        +FL D  +   +++E+N 
Sbjct: 254 RQKIGEAAVKAARAVNYTNAGTVEFLLDKYNN-FYFIEMNT 293


>gi|161486839|ref|NP_782770.2| pyruvate carboxylase [Clostridium tetani E88]
          Length = 1145

 Score = 79.0 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 76/222 (34%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+           I +            DK++SK V    GV   P +  
Sbjct: 81  AIHPGYGFLSENSEFANKCRDAGIEFIGPTGDIIEKLGDKIQSKIVAKEAGVETIPGVER 140

Query: 112 --LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP-----LDLLQSSSWNHGD 164
                    +       P ++K   GG   G+ ++K+++ +             ++    
Sbjct: 141 AITSEEEAFEIARECGYPVMVKAAAGGGGRGMRIVKEEKDLISTFNNAKEEARKAFGIDS 200

Query: 165 QLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLD 222
            L IE+Y++G   +   ++GD   ++  +            K          PA  I  +
Sbjct: 201 -LFIEKYLEGPKHIEVQILGDKHGNIVHMYERDCSIQRRHQK-----VVEFAPALSITEE 254

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +E+   A    +A+G       +FL D      +++E+N 
Sbjct: 255 KRQEICNDALKIARAVGYVNAGTVEFLVDKYGNH-YFIEVNP 295


>gi|15616216|ref|NP_244521.1| hypothetical protein BH3654 [Bacillus halodurans C-125]
 gi|10176278|dbj|BAB07373.1| BH3654 [Bacillus halodurans C-125]
 gi|15620943|dbj|BAB64940.1| L-glutamate-dependent ATP hydrolase paralogue [Bacillus halodurans]
          Length = 529

 Score = 79.0 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 43/256 (16%), Positives = 84/256 (32%), Gaps = 61/256 (23%)

Query: 88  ALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-----QHLISPPYVIKPLKGGSSLGII 142
           ++ ++K  +K+ +    VPV      N    DS        +  P VIKP  G S  G++
Sbjct: 80  SICINKDITKEYLEKANVPVPEGKGFNEAQADSDIIQYAKELGFPVVIKPTDGLSGKGVV 139

Query: 143 V-IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP------ 195
           V I+ ++ +   +           +++E+Y +G +    +MGD  +              
Sbjct: 140 VNIQNEEMLREAISYVREQLAYSNVVVERYFEGEDFRIYIMGDQVIGAVTRVPANVVGDG 199

Query: 196 -----------------------KSDFYSYELKYSSLNSTHVL----------------- 215
                                  +     +EL+ +     + +                 
Sbjct: 200 KRTIKQLIKLKNKARNKNPNLQRRPIKLDHELEKTLNLINYTIDSIPSKGERVILNTKSN 259

Query: 216 ------PAKIPLDIYKEVQRLAFLAHQAI-GCRGISRSDFLFDPLSRKVFWLEINVQPGM 268
                 P  +   +  E++++A  A +AI G    +  D L D  +     LEIN +P +
Sbjct: 260 ISTGGEPVDVTDQLTPEIKKIAVQAAKAIPGLIHCA-VDMLVDKENNNGVVLEINSKPQI 318

Query: 269 TPVSIFPEMAAYAGYS 284
               +FP         
Sbjct: 319 GAH-LFPMEGKAVNIP 333


>gi|329313782|gb|AEB88195.1| Pyruvate carboxylase [Staphylococcus aureus subsp. aureus T0131]
          Length = 1152

 Score = 79.0 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 33/221 (14%), Positives = 75/221 (33%), Gaps = 20/221 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+           I +    +    +  DK++++       +PV P    
Sbjct: 80  AIHPGYGFLSENEQFARRCAEEGIKFIGPHLEHLDMFGDKVKARTTAIKADLPVIPGTDG 139

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
            I       +       P +IK   GG   G+ +++++  +     ++ S         +
Sbjct: 140 PIKSYELAKEFAEEAGFPLMIKATSGGGGKGMRIVREESELEDAFHRAKSEAEKSFGNSE 199

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDI 223
           + IE+Y+D    +   V+GD   ++              ++        V P   +   +
Sbjct: 200 VYIERYIDNPKHIEVQVIGDEHGNIV-----HLFERDCSVQRRHQKVVEVAPSVGLSSTL 254

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +   A    + I        +FL      + F++E+N 
Sbjct: 255 RQRICDAAIQLMENIKYVNAGTVEFLV--SGDEFFFIEVNP 293


>gi|328950342|ref|YP_004367677.1| acetyl-CoA carboxylase, biotin carboxylase [Marinithermus
           hydrothermalis DSM 14884]
 gi|328450666|gb|AEB11567.1| acetyl-CoA carboxylase, biotin carboxylase [Marinithermus
           hydrothermalis DSM 14884]
          Length = 446

 Score = 79.0 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 36/219 (16%), Positives = 79/219 (36%), Gaps = 18/219 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+     +     I +            DK  +++V    GVP+ P    
Sbjct: 77  AIHPGYGFLAENAQFAEMCADHGITFIGPTPENMRALGDKATARRVAREAGVPIVPGTDA 136

Query: 114 NRF---TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGDQL 166
            +     +++   I  P ++K   GG   G+ V+   + +   +     ++ +     ++
Sbjct: 137 LQSVEEALEAAAEIGYPVILKASAGGGGRGMRVVHTAEDLERAVQQAQEEARAAFGNPEV 196

Query: 167 LIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
            +E+Y++    +   V+GD   DV  +            K          P+ +P  + K
Sbjct: 197 YLEKYIEEPKHVEVQVLGDGQ-DVIHLWERDCSIQRRHQKLL-----EEAPSILPEAVRK 250

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +   A    + +G       +FL D      +++E+N 
Sbjct: 251 GLVESAVRLAKHVGYTSAGTLEFLVDREGN-YYFIEMNT 288


>gi|226953993|ref|ZP_03824457.1| acetyl/propionyl-CoA carboxylase, alpha subunit [Acinetobacter sp.
           ATCC 27244]
 gi|226835244|gb|EEH67627.1| acetyl/propionyl-CoA carboxylase, alpha subunit [Acinetobacter sp.
           ATCC 27244]
          Length = 666

 Score = 79.0 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 79/221 (35%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       +   I +    + A      K  SK ++   GVP+ P    
Sbjct: 80  AIHPGYGFLSENDQFALACQQHNICFIGPPVDAILAMGLKATSKALMEKAGVPLTPGYHG 139

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
                +        I  P +IK   GG   G+ ++++ +     L     ++ S    D 
Sbjct: 140 TNQDAEFLKQQADRIGYPVLIKASAGGGGKGMSLVERSEDFLHSLASCKREAKSSFGNDD 199

Query: 166 LLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDI 223
           +LIE+Y +    +   V GD   +               ++          PA ++P + 
Sbjct: 200 VLIERYVIQPRHIEVQVFGDTHGNYV-----HLFERDCSVQRRHQKVLEEAPAPQMPSEK 254

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              +++ A  A +A+   G    +F+        +++E+N 
Sbjct: 255 LDAMRQAAIDAARAVNYVGAGTVEFIV-EQDGTAYFMEMNT 294


>gi|124005247|ref|ZP_01690088.1| hypothetical protein M23134_07745 [Microscilla marina ATCC 23134]
 gi|123989069|gb|EAY28647.1| hypothetical protein M23134_07745 [Microscilla marina ATCC 23134]
          Length = 362

 Score = 79.0 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 43/242 (17%), Positives = 95/242 (39%), Gaps = 22/242 (9%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD------SQHLISPPYV 129
            +P   S        + K   ++++   G+P+   +++ R  +       SQ  +  P V
Sbjct: 86  GLPLLGSNAQTLRNLLQKNDCQRILKEVGLPIPTHLILTRSNLKEVSSLLSQSAVGFPMV 145

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--MGDAS- 186
           +KP     S+G+ ++   +     + Q  +     +++ E ++   ++TCG   +G+   
Sbjct: 146 LKPTAESGSVGVRMVTTLEEANDGVQQILADFPLSEVIAEAFLPNDDITCGFFRLGNQVM 205

Query: 187 -LDVTEI---AVPKSDFYSYELK-YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241
            L    I      K++  S + +      +  + P      I +++Q       +A+   
Sbjct: 206 LLPTAYIVKSVAGKTNILSRKERLQEWSENDKIQPHITEQHILEQLQLYIPQIVEALNIE 265

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMT-PVSIFPEMAAYA--GYS----FRELLLWMVE 294
            ISR D   D   +  F+ + N  P +  P S+  +        YS    ++ L+  +V 
Sbjct: 266 DISRIDGRLDTKGQLRFF-DANGLPALDFPESVMNKQCFTCFPDYSQEEVYQALIHTIVY 324

Query: 295 DA 296
           +A
Sbjct: 325 NA 326


>gi|57651723|ref|YP_185987.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus COL]
 gi|88194813|ref|YP_499610.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus NCTC
           8325]
 gi|57285909|gb|AAW38003.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus COL]
 gi|87202371|gb|ABD30181.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus NCTC
           8325]
 gi|329728847|gb|EGG65268.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus 21193]
 gi|329730746|gb|EGG67125.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus 21189]
          Length = 1150

 Score = 79.0 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 33/221 (14%), Positives = 75/221 (33%), Gaps = 20/221 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+           I +    +    +  DK++++       +PV P    
Sbjct: 80  AIHPGYGFLSENEQFARRCAEEGIKFIGPHLEHLDMFGDKVKARTTAIKADLPVIPGTDG 139

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
            I       +       P +IK   GG   G+ +++++  +     ++ S         +
Sbjct: 140 PIKSYELAKEFAEEAGFPLMIKATSGGGGKGMRIVREESELEDAFHRAKSEAEKSFGNSE 199

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDI 223
           + IE+Y+D    +   V+GD   ++              ++        V P   +   +
Sbjct: 200 VYIERYIDNPKHIEVQVIGDEHGNIV-----HLFERDCSVQRRHQKVVEVAPSVGLSSTL 254

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +   A    + I        +FL      + F++E+N 
Sbjct: 255 RQRICDAAIQLMENIKYVNAGTVEFLV--SGDEFFFIEVNP 293


>gi|117927756|ref|YP_872307.1| carbamoyl-phosphate synthase L chain, ATP-binding [Acidothermus
           cellulolyticus 11B]
 gi|117648219|gb|ABK52321.1| Carbamoyl-phosphate synthase L chain, ATP-binding protein
           [Acidothermus cellulolyticus 11B]
          Length = 454

 Score = 79.0 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 48/229 (20%), Positives = 91/229 (39%), Gaps = 26/229 (11%)

Query: 57  VLHGNFG---ED-GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            +H  +G   E+ G  QA+L+   + +      A A   DK+ ++  V++ GVPV P   
Sbjct: 77  AIHPGYGFLSENAGFAQAVLD-AGLVWIGPAPEAIAAMGDKVAARNRVAAAGVPVAPGTA 135

Query: 113 VNRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGD 164
                ++    +   I  P ++K   GG  +G+ V   D  +          +  +    
Sbjct: 136 EPLTDVEEAVRAAASIGYPLMVKAAGGGGGIGMKVAWDDAGLRSAFATAQSAAQRFFASP 195

Query: 165 QLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            +L+E+YV G   +   ++G   L    +        S + ++  +      P  +P  +
Sbjct: 196 AILLERYVPGARHVEVQILG---LPDGRVVALGERDCSVQRRHQKVVEETPCPV-LPEPV 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLS--------RKVFWLEINV 264
            + +   A  A +A+  RG    +FL DP S           ++LE+N 
Sbjct: 252 RRRMFMAAVRAGEAVDYRGAGTVEFLLDPASLRDDDPEAGVFYFLEMNT 300


>gi|300814449|ref|ZP_07094711.1| pyruvate carboxylase [Peptoniphilus sp. oral taxon 836 str. F0141]
 gi|300511419|gb|EFK38657.1| pyruvate carboxylase [Peptoniphilus sp. oral taxon 836 str. F0141]
          Length = 1141

 Score = 79.0 bits (194), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 48/243 (19%), Positives = 91/243 (37%), Gaps = 24/243 (9%)

Query: 35  QIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSM 91
            +D+D  + L  A      A + +H  +G   E+    A  E   I +      A     
Sbjct: 63  YLDIDEIIKLAKAK-----AVDAIHPGYGFLAENAEFAAKCEKEGITFIGPSSSAMEALG 117

Query: 92  DKMRSKQVVSSCGVPVCPSILV----NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147
           DK++SK V ++  VP  P I      +    D       P +IK   GG   G+ V+  +
Sbjct: 118 DKIKSKIVANNAKVPTIPGIQKPIENDEQAKDFAKEAGYPVIIKASFGGGGRGMRVVNNE 177

Query: 148 QSIPLDL----LQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSY 202
           + +   L     ++      D + IE+Y++    +   ++GD   ++  +          
Sbjct: 178 KELIEKLHSAKSEAKQAFGNDAIFIEKYLEKPKHIEVQILGDKFGNIVHLFERDCSIQRR 237

Query: 203 ELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
             K          PA  +P ++ + + + A     +IG       +FL D      +++E
Sbjct: 238 HQK-----VIEFTPAFSLPKNVRESICQDALKIANSIGYINAGTVEFLVDKNLNH-YFIE 291

Query: 262 INV 264
           +N 
Sbjct: 292 VNP 294


>gi|260642518|ref|ZP_05416178.2| phosphoribosylglycinamide formyltransferase 2 [Bacteroides
           finegoldii DSM 17565]
 gi|260621779|gb|EEX44650.1| phosphoribosylglycinamide formyltransferase 2 [Bacteroides
           finegoldii DSM 17565]
          Length = 389

 Score = 79.0 bits (194), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 46/255 (18%), Positives = 86/255 (33%), Gaps = 36/255 (14%)

Query: 31  FKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
           F++  +     +  V+   +PD+    +     E         L +       ++ SA +
Sbjct: 46  FEIFDMLNGEELERVVKKHRPDIIVPEIEAIRTE--------RLYDFEKEGIQVVPSARA 97

Query: 91  MD-----KMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYVIKPLKGGSSLGIIV 143
           ++     K          G+               ++   I  P V+KPL   S  G  +
Sbjct: 98  VNFTMNRKAIRDLAAQELGLKTAKYFYAKTLEELKEAADKIGFPCVVKPLMSSSGKGQSL 157

Query: 144 IKKDQSIPLDLLQSSSWNHGD--QLLIEQYVDGIE----LTCGVMGDASLDVTEIA-VPK 196
           +K    +        S + GD  +L+IE+++        LT       +L    I  V K
Sbjct: 158 VKSADELEHAWEYGCSGSRGDIRELIIEEFIKFDSEITLLTVTQKNGPTLFCPPIGHVQK 217

Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256
              Y               PA I     KE + +A    +A+   G+   +F     +  
Sbjct: 218 GGDY----------RESFQPAHIDPAHLKEAEEMAEKVTRALTGAGLWGVEFFLSHENG- 266

Query: 257 VFWLEINVQP---GM 268
           V++ E++ +P   GM
Sbjct: 267 VYFSELSPRPHDTGM 281


>gi|158299300|ref|XP_319416.4| AGAP010228-PA [Anopheles gambiae str. PEST]
 gi|157014298|gb|EAA14349.4| AGAP010228-PA [Anopheles gambiae str. PEST]
          Length = 696

 Score = 79.0 bits (194), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 79/221 (35%), Gaps = 18/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H  +G   E+     + +  ++ +      A      K  SK ++S+ GVP+      
Sbjct: 104 AIHPGYGFLSENVEFAELCQQEQVTFIGPPASAIRDMGIKSTSKHIMSAAGVPIINGYHG 163

Query: 113 ---VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS----IPLDLLQSSSWNHGDQ 165
               +   M     I  P +IK ++GG   G+ + + +      +     +S        
Sbjct: 164 EDQSDEKLMQEAKKIGFPLMIKAVRGGGGKGMRIAETEADFMPMLQSARTESEKAFGDSA 223

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           +L+E+YV     +   V  D   +   +           ++          PA  +  ++
Sbjct: 224 MLLERYVRSPRHVEVQVFADHYGNAVYLYE-----RDCSVQRRHQKIIEEAPAPGLSEEL 278

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            K++   A  A +A+   G    +F+ D       ++E+N 
Sbjct: 279 RKQLGEAAVRAAKAVNYVGAGTVEFILDKEDLSFHFMEMNT 319


>gi|184152784|ref|YP_001841125.1| phosphoribosylaminoimidazole carboxylase ATPase subunit
           [Lactobacillus reuteri JCM 1112]
 gi|183224128|dbj|BAG24645.1| phosphoribosylaminoimidazole carboxylase II [Lactobacillus reuteri
           JCM 1112]
          Length = 374

 Score = 79.0 bits (194), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 42/207 (20%), Positives = 87/207 (42%), Gaps = 15/207 (7%)

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQ 121
           E+  + A+ ++ +  Y   G      + +++R K  +   GV   P + V+      D+ 
Sbjct: 78  ENVDLNALEDVQDRVYLPQGTNLLYTTKNRLREKNFLRQAGVKTAPFMAVHTSAELKDAV 137

Query: 122 HLISPPYVIKPLKGG-SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTC 179
             I  P V+K  +GG    G  V++       DL + +        ++E +V    E + 
Sbjct: 138 KKIGYPAVLKTSEGGYDGHGQEVLRNKD----DLDKCAPILATGDCILEGWVPFNRECSV 193

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
            V  +   ++T   V ++  +   L  S      ++PA+I  ++ ++ Q++A    QAI 
Sbjct: 194 MVGRNEDGEITAFPVSENIHHDEILHLS------IVPARISSELQQKAQKIAVQIAQAIN 247

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQP 266
            RGI   +        +++  E+  +P
Sbjct: 248 LRGILGVEMFVT-DDGEIYINELAPRP 273


>gi|158430175|pdb|2QF7|A Chain A, Crystal Structure Of A Complete Multifunctional Pyruvate
           Carboxylase From Rhizobium Etli
 gi|158430176|pdb|2QF7|B Chain B, Crystal Structure Of A Complete Multifunctional Pyruvate
           Carboxylase From Rhizobium Etli
          Length = 1165

 Score = 79.0 bits (194), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 78/221 (35%), Gaps = 18/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E            I +            +K+ ++ +  S GVPV P+   
Sbjct: 96  AIHPGYGLLSESPEFVDACNKAGIIFIGPKADTMRQLGNKVAARNLAISVGVPVVPATEP 155

Query: 114 NRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
               M         I  P ++K   GG   G+ VI+ +  +  ++ ++          D+
Sbjct: 156 LPDDMAEVAKMAAAIGYPVMLKASWGGGGRGMRVIRSEADLAKEVTEAKREAMAAFGKDE 215

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           + +E+ V+    +   ++GD   +V              ++  +       PA  +    
Sbjct: 216 VYLEKLVERARHVESQILGDTHGNVV-----HLFERDCSVQRRNQKVVERAPAPYLSEAQ 270

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +E+   +     A    G    ++L D  + K +++E+N 
Sbjct: 271 RQELAAYSLKIAGATNYIGAGTVEYLMDADTGKFYFIEVNP 311


>gi|154151324|ref|YP_001404942.1| pyruvate carboxylase subunit A [Candidatus Methanoregula boonei
           6A8]
 gi|153999876|gb|ABS56299.1| acetyl-CoA carboxylase, biotin carboxylase [Methanoregula boonei
           6A8]
          Length = 493

 Score = 79.0 bits (194), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 33/221 (14%), Positives = 75/221 (33%), Gaps = 20/221 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+     +     + +             K+ SKQ++   GVPV P    
Sbjct: 79  AIHPGYGFLAENYRFAKLCADEGVTFIGPKSKTIQAMGSKIGSKQMMKKAGVPVLPGTDD 138

Query: 114 NRFTMDSQHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGD 164
               +D+       I  P ++K   GG  +G+ ++  + ++   +     +  S++    
Sbjct: 139 GIRDIDTAKKVAAEIGYPVIVKASAGGGGIGMQIVNDEAALEEAITGSMRIARSAFG-DP 197

Query: 165 QLLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            + IE+Y V    +   V+ D       +   +        K           A +  ++
Sbjct: 198 TVFIEKYLVKPRHIEFQVLADEHGHAVHLFDRECSIQRRHQK----LVEEAPSAIMTDEL 253

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              +   A    +          +FL+   +   +++E+N 
Sbjct: 254 RARMSSAALKVAEVSDYTNAGSVEFLY--SNGNFYFMEMNT 292


>gi|86359581|ref|YP_471473.1| pyruvate carboxylase [Rhizobium etli CFN 42]
 gi|1256798|gb|AAC44388.1| pyruvate carboxylase [Rhizobium etli]
 gi|86283683|gb|ABC92746.1| pyruvate carboxylase protein [Rhizobium etli CFN 42]
          Length = 1154

 Score = 79.0 bits (194), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 78/221 (35%), Gaps = 18/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E            I +            +K+ ++ +  S GVPV P+   
Sbjct: 85  AIHPGYGLLSESPEFVDACNKAGIIFIGPKADTMRQLGNKVAARNLAISVGVPVVPATEP 144

Query: 114 NRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
               M         I  P ++K   GG   G+ VI+ +  +  ++ ++          D+
Sbjct: 145 LPDDMAEVAKMAAAIGYPVMLKASWGGGGRGMRVIRSEADLAKEVTEAKREAMAAFGKDE 204

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           + +E+ V+    +   ++GD   +V              ++  +       PA  +    
Sbjct: 205 VYLEKLVERARHVESQILGDTHGNVV-----HLFERDCSVQRRNQKVVERAPAPYLSEAQ 259

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +E+   +     A    G    ++L D  + K +++E+N 
Sbjct: 260 RQELAAYSLKIAGATNYIGAGTVEYLMDADTGKFYFIEVNP 300


>gi|49483277|ref|YP_040501.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus MRSA252]
 gi|257425166|ref|ZP_05601592.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257427829|ref|ZP_05604227.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257430464|ref|ZP_05606846.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus 68-397]
 gi|257433166|ref|ZP_05609524.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus E1410]
 gi|257436065|ref|ZP_05612112.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus M876]
 gi|282903663|ref|ZP_06311551.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus C160]
 gi|282905432|ref|ZP_06313287.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282908404|ref|ZP_06316235.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282913889|ref|ZP_06321676.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus M899]
 gi|282918813|ref|ZP_06326548.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus C427]
 gi|282923935|ref|ZP_06331611.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus C101]
 gi|283957858|ref|ZP_06375309.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|293500925|ref|ZP_06666776.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus 58-424]
 gi|293509881|ref|ZP_06668590.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus M809]
 gi|293526468|ref|ZP_06671153.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus M1015]
 gi|295427602|ref|ZP_06820234.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|297591444|ref|ZP_06950082.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus MN8]
 gi|49241406|emb|CAG40090.1| putative pyruvate carboxylase [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|257272142|gb|EEV04274.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257274670|gb|EEV06157.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257278592|gb|EEV09211.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus 68-397]
 gi|257281259|gb|EEV11396.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus E1410]
 gi|257284347|gb|EEV14467.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus M876]
 gi|282313907|gb|EFB44299.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus C101]
 gi|282316623|gb|EFB46997.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus C427]
 gi|282321957|gb|EFB52281.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus M899]
 gi|282328069|gb|EFB58351.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282330724|gb|EFB60238.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282595281|gb|EFC00245.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus C160]
 gi|283790007|gb|EFC28824.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|290920540|gb|EFD97603.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus M1015]
 gi|291095930|gb|EFE26191.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus 58-424]
 gi|291467331|gb|EFF09848.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus M809]
 gi|295127960|gb|EFG57594.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|297576330|gb|EFH95046.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus MN8]
 gi|315193782|gb|EFU24177.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus CGS00]
          Length = 1150

 Score = 79.0 bits (194), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 33/221 (14%), Positives = 75/221 (33%), Gaps = 20/221 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+           I +    +    +  DK++++       +PV P    
Sbjct: 80  AIHPGYGFLSENEQFARRCAEEGIKFIGPHLEHLDMFGDKVKARTTAIKADLPVIPGTDG 139

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
            I       +       P +IK   GG   G+ +++++  +     ++ S         +
Sbjct: 140 PIKSYELAKEFAEEAGFPLMIKATSGGGGKGMRIVREESELEDAFHRAKSEAEKSFGNSE 199

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDI 223
           + IE+Y+D    +   V+GD   ++              ++        V P   +   +
Sbjct: 200 VYIERYIDNPKHIEVQVIGDEHGNIV-----HLFERDCSVQRRHQKVVEVAPSVGLSSTL 254

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +   A    + I        +FL      + F++E+N 
Sbjct: 255 RQRICDAAIQLMENIKYVNAGTVEFLV--SGDEFFFIEVNP 293


>gi|33603708|ref|NP_891268.1| biotin carboxylase [Bordetella bronchiseptica RB50]
 gi|33577833|emb|CAE35098.1| biotin carboxylase [Bordetella bronchiseptica RB50]
          Length = 454

 Score = 79.0 bits (194), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 34/221 (15%), Positives = 81/221 (36%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---S 110
            +H  +G   E+      ++   + +      A     DK+++K+ +   GVP  P    
Sbjct: 77  AIHPGYGFLSENAGFAEAVQAAGLAFIGPTPAAIRTMGDKVQAKRAMQQSGVPCVPGSQG 136

Query: 111 ILVNR--FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
           +L +      +    I  P ++K   GG   G+ V++ + ++   +     ++ +     
Sbjct: 137 VLPDDPGAIAEQARAIGFPLIVKAAGGGGGRGMRVVEHEAALHGAVQTTRAEALAAFGNP 196

Query: 165 QLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            L +E+++     +   V+ D   +   +            K             +    
Sbjct: 197 DLYMERFLQRPRHIEIQVLADHHGNAVWLGERDCSMQRRHQKIL----EESPAPGLDPAA 252

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + + +    A +AIG RG    +FL+     + +++E+N 
Sbjct: 253 VEAIGQRCAHACRAIGYRGAGTFEFLY--EDGQFYFIEMNT 291


>gi|21282726|ref|NP_645814.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus MW2]
 gi|49485952|ref|YP_043173.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus MSSA476]
 gi|297208248|ref|ZP_06924678.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus ATCC
           51811]
 gi|300912325|ref|ZP_07129768.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus TCH70]
 gi|21204164|dbj|BAB94862.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus MW2]
 gi|49244395|emb|CAG42823.1| putative pyruvate carboxylase [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|296886987|gb|EFH25890.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus ATCC
           51811]
 gi|300886571|gb|EFK81773.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus TCH70]
          Length = 1150

 Score = 79.0 bits (194), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 33/221 (14%), Positives = 75/221 (33%), Gaps = 20/221 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+           I +    +    +  DK++++       +PV P    
Sbjct: 80  AIHPGYGFLSENEQFARRCAEEGIKFIGPHLEHLDMFGDKVKARTTAIKADLPVIPGTDG 139

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
            I       +       P +IK   GG   G+ +++++  +     ++ S         +
Sbjct: 140 PIKSYELAKEFAEEAGFPLMIKATSGGGGKGMRIVREESELEDAFHRAKSEAEKSFGNSE 199

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDI 223
           + IE+Y+D    +   V+GD   ++              ++        V P   +   +
Sbjct: 200 VYIERYIDNPKHIEVQVIGDEYGNIV-----HLFERDCSVQRRHQKVVEVAPSVGLSPTL 254

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +   A    + I        +FL      + F++E+N 
Sbjct: 255 RQRICDAAIQLMENIKYVNAGTVEFLV--SGDEFFFIEVNP 293


>gi|126740372|ref|ZP_01756060.1| methylcrotonyl-CoA carboxylase, alpha subunit [Roseobacter sp.
           SK209-2-6]
 gi|126718508|gb|EBA15222.1| methylcrotonyl-CoA carboxylase, alpha subunit [Roseobacter sp.
           SK209-2-6]
          Length = 647

 Score = 79.0 bits (194), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 41/226 (18%), Positives = 80/226 (35%), Gaps = 25/226 (11%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      +E   + +      A      K  +K ++   GVPV P    
Sbjct: 78  AIHPGYGFLSENPEFVDAVEAAGLTFIGPSADAIRKMGLKDAAKALMEEAGVPVVPGYHG 137

Query: 114 NRFT----MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS-----SSWNHGD 164
                    +    I  P +IK + GG   G+ +++K       L  +     +++    
Sbjct: 138 ANQDAGFLAEEAGKIGYPVLIKAVAGGGGKGMRLVEKSAEFEDALRSAQGEATTAFG-NP 196

Query: 165 QLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            +LIE+Y+     +   V GD +  V              L+          PA  +  +
Sbjct: 197 DVLIEKYIQQPRHIEVQVFGDGTHTV------HLFERDCSLQRRHQKVIEEAPAPGMTAE 250

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR----KVFWLEINV 264
           + + +      A +AIG +G    +F+ D          +++E+N 
Sbjct: 251 MREAMGHAGVRAAEAIGYKGAGTVEFIVDGSEGLRPDGFWFMEMNT 296


>gi|294677050|ref|YP_003577665.1| methylcrotonoyl-CoA carboxylase subunit alpha [Rhodobacter
           capsulatus SB 1003]
 gi|294475870|gb|ADE85258.1| methylcrotonoyl-CoA carboxylase, alpha subunit [Rhodobacter
           capsulatus SB 1003]
          Length = 640

 Score = 79.0 bits (194), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 38/226 (16%), Positives = 81/226 (35%), Gaps = 25/226 (11%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      ++   + +      A      K  +K +++  GVPV P    
Sbjct: 77  AIHPGYGFLSENPDFVDAVQAAGLVFIGPSGDAIRAMGLKDAAKALMARAGVPVVPGYHG 136

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGD 164
           +    +    +   +  P +IK + GG   G+  + +       L        +++    
Sbjct: 137 DNQDPEHLAGAAEALGYPVLIKAVAGGGGKGMRRVDRAADFAAALSGAQGEAQTAFG-NP 195

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            +LIE+YV+    +   + GD +                 L+          PA  +  +
Sbjct: 196 SVLIEKYVEKPRHIEVQIFGDGT------RAVHLFERDCSLQRRHQKVIEEAPAPGMTEE 249

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR----KVFWLEINV 264
           +   + + A  A +AIG  G    +F+ D        + +++E+N 
Sbjct: 250 MRAAMGQAAVRAAEAIGYSGAGTVEFITDASDGLRPDRFWFMEMNT 295


>gi|225630129|ref|YP_002726920.1| propionyl-CoA carboxylase, alpha subunit [Wolbachia sp. wRi]
 gi|225592110|gb|ACN95129.1| propionyl-CoA carboxylase, alpha subunit [Wolbachia sp. wRi]
          Length = 691

 Score = 79.0 bits (194), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 32/220 (14%), Positives = 75/220 (34%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+      L+   I +         ++ +K+ +K+     GV V P    
Sbjct: 81  AVHPGYGFLAENPDFPRALQKHNIDFIGPSAETIEVTANKITAKEAAKKAGVNVVPGYMG 140

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
            I            I  P ++K   GG   G+ ++   + I L       ++        
Sbjct: 141 KISDAAHAAQVAEEIGFPVMLKAASGGGGKGMRIVNSKKEIELAFTSATNEAEKSFKDGS 200

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+Y++    +   ++ D   ++  +   +        K             I  ++ 
Sbjct: 201 IFIEKYIELPRHIEIQIIADKYGNIVCLGERECSIQRNNQKII----EETPSPFISEEVR 256

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +++        + +G       +F+ D   +  ++LE+N 
Sbjct: 257 QKMYVQCVSLAKQVGYFSAGTVEFVVDK-DQNFYFLEVNT 295


>gi|222085225|ref|YP_002543755.1| acetyl-CoA carboxylase, biotin carboxylase [Agrobacterium
           radiobacter K84]
 gi|221722673|gb|ACM25829.1| acetyl-CoA carboxylase, biotin carboxylase [Agrobacterium
           radiobacter K84]
          Length = 662

 Score = 79.0 bits (194), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 81/225 (36%), Gaps = 22/225 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      +E   + +      +      K  +K ++   GVPV P    
Sbjct: 77  AIHPGYGFLSENADFAEAVEKAGLTFIGPSPASIRAMGLKDAAKALMEKAGVPVVPGYHG 136

Query: 114 NRFTM----DSQHLISPPYVIKPLKGGSSLGIIVIKKDQS----IPLDLLQSSSWNHGDQ 165
           ++       +    I  P +IK   GG   G+  + + +     +     ++ S    D 
Sbjct: 137 DKQDAAFLTERAAEIGFPVLIKARAGGGGKGMRRVDRPEDFAAFLEAARREAKSAFGDDA 196

Query: 166 LLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           +LIE+Y +    +   V GD+  +V              L+          PA  +  ++
Sbjct: 197 VLIEKYLIQPRHIEIQVFGDSHGNVV-----HLFERDCSLQRRHQKVIEEAPAPGMTEEM 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR----KVFWLEINV 264
              +   A  A +AI  RG    +F+ D        + F++E+N 
Sbjct: 252 RSAMGEAAVRAARAIDYRGAGTVEFIADVSQGLLPNRFFFMEMNT 296


>gi|319785382|ref|YP_004144858.1| ATP-dependent carboxylate-amine ligase domain protein ATP-grasp
           [Mesorhizobium ciceri biovar biserrulae WSM1271]
 gi|317171270|gb|ADV14808.1| ATP-dependent carboxylate-amine ligase domain protein ATP-grasp
           [Mesorhizobium ciceri biovar biserrulae WSM1271]
          Length = 406

 Score = 79.0 bits (194), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 32/202 (15%), Positives = 69/202 (34%), Gaps = 21/202 (10%)

Query: 71  ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPY 128
           +    ++P       +     DK   +Q+++  GVP+    +         S   I  P 
Sbjct: 91  LCRHFDLP--GPDPTSIERCCDKFVQRQLLAEAGVPIPAYRVATNVADVESSAAEIGLPV 148

Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLD----LLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
           ++KP  G  S G+ + +    +       L     W    ++L+E++ +G      VMG 
Sbjct: 149 ILKPAVGTGSQGVRLCRNIHELAEHTTYLLGGKHIWRSPPRILVEEFAEGPHYITHVMGH 208

Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244
             + +      +   + +           + PA +  D +K +   +    QA+   G  
Sbjct: 209 EVIGIEAADFDRPPHFVFRGG--------IFPAPLTDDEHKRIIDTSLSCLQALSL-GWG 259

Query: 245 R--SDFLFDPLSRKVFWLEINV 264
               +  +         +E+N 
Sbjct: 260 PTCIELRWTKCG--PVVIEVNP 279


>gi|260461858|ref|ZP_05810104.1| protein of unknown function DUF201 [Mesorhizobium opportunistum
           WSM2075]
 gi|259032499|gb|EEW33764.1| protein of unknown function DUF201 [Mesorhizobium opportunistum
           WSM2075]
          Length = 389

 Score = 79.0 bits (194), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 32/202 (15%), Positives = 69/202 (34%), Gaps = 21/202 (10%)

Query: 71  ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPY 128
           +    ++P       +     DK   +Q+++  GVP+    +         S   I  P 
Sbjct: 74  LCRHFDLP--GPDPTSIERCCDKFVQRQLLAEAGVPIPAYRVATNVADVESSAAEIGLPV 131

Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLD----LLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
           ++KP  G  S G+ + +    +       L     W    ++L+E++ +G      VMG 
Sbjct: 132 ILKPAVGTGSQGVRLCRNIHELAEHTTYLLGGKHIWRSPPRILVEEFAEGPHYITHVMGH 191

Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244
             + +      +   + +           + PA +  D +K +   +    QA+   G  
Sbjct: 192 EVIGIEAADFDRPPHFVFRGG--------IFPAPLTDDEHKRIIDTSLSCLQALSL-GWG 242

Query: 245 R--SDFLFDPLSRKVFWLEINV 264
               +  +         +E+N 
Sbjct: 243 PTCIELRWTKCG--PVVIEVNP 262


>gi|262195317|ref|YP_003266526.1| carbamoyl-phosphate synthase L chain ATP- binding protein
           [Haliangium ochraceum DSM 14365]
 gi|262078664|gb|ACY14633.1| Carbamoyl-phosphate synthase L chain ATP- binding protein
           [Haliangium ochraceum DSM 14365]
          Length = 452

 Score = 79.0 bits (194), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 77/220 (35%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---S 110
            LH  +G   E+ L  ++ E   + +         L   K+ +K+ + + G+ V P    
Sbjct: 80  ALHPGWGFLSENALFASLCETHGVTFIGPPAHVMHLMGQKIPAKRAMRAAGLAVIPGSEG 139

Query: 111 ILVN-RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
           +L +     +    +  P +IK   GG   G+ V +    +   +  +++         +
Sbjct: 140 VLGDVDEAREVAERVGYPVLIKAESGGGGRGMRVARSADELADAVADAANEARAAFGDPR 199

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+ V+ G  +   ++ D   +   +            K             +  +  
Sbjct: 200 VYLEKLVEGGRHVEIQLLADRYGNAIHLGERDCTVQRNHQK----LIEESPSPALDAEER 255

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
                 A  A  +IG  G    +FL D     + ++E+N 
Sbjct: 256 ARTLAAAVRAAVSIGYVGAGTMEFLLDEH-GTLRFMEMNT 294


>gi|320353055|ref|YP_004194394.1| carbamoyl-phosphate synthase large subunit [Desulfobulbus
           propionicus DSM 2032]
 gi|320121557|gb|ADW17103.1| carbamoyl-phosphate synthase large subunit [Desulfobulbus
           propionicus DSM 2032]
          Length = 1074

 Score = 78.6 bits (193), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 51/278 (18%), Positives = 97/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G++V  I         D                V  V+   +PD    
Sbjct: 29  SGAQAVKALKEEGYEVVLINSNPATIMTDPGLADRTYIEPITPECVAKVIERERPDALLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G  G +  ++     +LE   +    + I     +  +   +  +   G+ V  S +
Sbjct: 89  TLGGQTGLNTAIKVAELGVLERYGVELLAANIEVIRKAEGREEFRDAMRKIGLKVPESAI 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           V+     M +   I  P +++P       G  V      +   +      +   ++++E+
Sbjct: 149 VHTIDEAMAAGERIGFPIIVRPSFTLGGTGGGVAYNRAELNKMVTAGLDLSMTTEVMLER 208

Query: 171 YVDG-IELTCGVMGDA-SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            + G  E    VM D     V   ++   D           +S  V PA+ +    Y+E+
Sbjct: 209 SLLGWKEYELEVMRDRNDNVVIICSIENVDAMGVHT----GDSITVAPAQTLTDREYQEM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  A    + IG   G S   F  +P   ++  +E+N 
Sbjct: 265 RDAAIAIIREIGVETGGSNVQFAVNPADGELMVIEMNP 302



 Score = 52.8 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 47/264 (17%), Positives = 94/264 (35%), Gaps = 31/264 (11%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLV-----QA 70
           AL + G +   +         D D S  L    L  +   N++      DG++     Q 
Sbjct: 587 ALREIGVESIMVNSNPETVSTDYDTSDKLYFEPLTREDVLNIIE-REKPDGVIVQFGGQT 645

Query: 71  ILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQH 122
            L L        +P   +   A   + D+ R +Q +   G+    +   +     +    
Sbjct: 646 PLNLAVPLAKQGVPIIGTSPDAIDRAEDRKRFQQFLQKLGLRQPANGTAHTLDEALAVAG 705

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGV 181
            I  P V++P        + ++  +Q I   +           +L++Q++ D IE+    
Sbjct: 706 EIGYPVVMRPSYVLGGRDMRIVYNEQGIRSFMAIPGMSGGEHPVLLDQFLKDAIEVDVDA 765

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGC 240
           + D S+ V    +   +    E    S +S  VLP   +   + +E+        + +G 
Sbjct: 766 ISDGSMTVIGGIMEHIE----EAGIHSGDSACVLPPHTLSPAMIEEITAATKAMAKELGV 821

Query: 241 RGISRSDFLFDPLSRKVFWLEINV 264
            G+    F      + ++ LE+N 
Sbjct: 822 IGLMNVQFAV--QGQTLYVLEVNP 843


>gi|298385550|ref|ZP_06995108.1| conserved hypothetical protein [Bacteroides sp. 1_1_14]
 gi|298261691|gb|EFI04557.1| conserved hypothetical protein [Bacteroides sp. 1_1_14]
          Length = 429

 Score = 78.6 bits (193), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 33/193 (17%), Positives = 84/193 (43%), Gaps = 10/193 (5%)

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC-PSILVNRFTMDSQHLISPPYVIK 131
           E L +P     I  S +SM+K + ++ ++  G+        +      ++HL+  P V+K
Sbjct: 85  EKLGLP--CMPIETSNISMNKYQIRKRLNEYGLNSGGEIFEIRNKEEINKHLLKIPCVVK 142

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC-GVMGDASLDVT 190
           P  G  S G+ ++  +  +   +  +   +  +++ +E ++ G E +    +    + + 
Sbjct: 143 PSDGSGSKGVKIVFDNSELESAIQYAFEESRNNEIYVEPFISGEEFSVEAYVCQREVYIY 202

Query: 191 EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR-GISRSDFL 249
            I   +  ++ +  +YS   +T++    +  D+   ++     A +A+G   G    D +
Sbjct: 203 SIMKTEFRWHEFFPEYS--QTTYL---DVSQDMEFLIEEEIKTAVKALGLNFGPVNFDLI 257

Query: 250 FDPLSRKVFWLEI 262
              L  K + +++
Sbjct: 258 VSSLDGKPYIIDV 270


>gi|295695397|ref|YP_003588635.1| acetyl-CoA carboxylase, biotin carboxylase [Bacillus tusciae DSM
           2912]
 gi|295410999|gb|ADG05491.1| acetyl-CoA carboxylase, biotin carboxylase [Bacillus tusciae DSM
           2912]
          Length = 446

 Score = 78.6 bits (193), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 71/220 (32%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     +     I +      A     DK  +K+ +   GVP  P    
Sbjct: 77  AIHPGYGFLAENSDFAEVCNACNITFIGPPPSAIEQMGDKSVAKETMKRAGVPTVPGTDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS-----SWNHGD 164
            I      +     I  P +IK   GG   G+      + +   +  +      ++ +  
Sbjct: 137 LIASTEEALRVAEQIGYPVIIKATAGGGGKGMRTAGTPEELAKGIEMARTEAETAFGNPG 196

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             L +   +   +   +M D   +   +            K             +  ++ 
Sbjct: 197 VYLEKLVQEPRHVEIQIMADRHGNAVYLGERDCSIQRRHQK----LIEEAPCPVLTPELR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +E+   A  A  A+G  G    +FL D    K +++E+N 
Sbjct: 253 REMGEAAVRAALAVGYVGAGTVEFLLDK-DGKFYFMEMNT 291


>gi|121611103|ref|YP_998910.1| carbamoyl-phosphate synthase L chain, ATP-binding
           [Verminephrobacter eiseniae EF01-2]
 gi|121555743|gb|ABM59892.1| Carbamoyl-phosphate synthase L chain, ATP-binding
           [Verminephrobacter eiseniae EF01-2]
          Length = 721

 Score = 78.6 bits (193), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 38/219 (17%), Positives = 87/219 (39%), Gaps = 16/219 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      +    + +         L  +K ++K  +   GVP  P    
Sbjct: 78  AVHPGYGFLSENAAFAQAVADAGLVFVGPSARVIDLMGNKAQAKAAMREAGVPTVPGAPA 137

Query: 114 NRFT---MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL----DLLQSSSWNHGDQL 166
           +      +++   +  P ++K   GG   G+ V+ ++ ++P        +++S    D++
Sbjct: 138 SGSDAQVLEAVRRVGYPVILKAAAGGGGRGMRVVHEESALPELLRQARSEAASAFGSDEI 197

Query: 167 LIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
           +IE+ ++    +   V+ D       +        S + ++  +      PA +   +  
Sbjct: 198 IIERAIERARHIEIQVLCDEHGHQLHLGERD---CSTQRRFQKVIEEAPSPA-VDASLRH 253

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           E+  +A  A  AIG  G+   +FL     R  +++E+N 
Sbjct: 254 EMGEIARKACAAIGYTGVGTLEFLL-GADRSFYFMEMNT 291


>gi|281411775|ref|YP_003345854.1| carbamoyl-phosphate synthase, large subunit [Thermotoga
           naphthophila RKU-10]
 gi|281372878|gb|ADA66440.1| carbamoyl-phosphate synthase, large subunit [Thermotoga
           naphthophila RKU-10]
          Length = 1099

 Score = 78.6 bits (193), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 55/289 (19%), Positives = 110/289 (38%), Gaps = 38/289 (13%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI---------DVDRS------------VGLV 45
           G ++E + S   G     AL+ AG++V  +         D + S            +  +
Sbjct: 21  GQAAEFDYS---GTQALKALKSAGYEVIIVNSNSATIMTDPEFSDAVYIEPLTVEFLEKI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   +PD     L G    +  V    + IL+   +    + + +   + D+   K+ + 
Sbjct: 78  IEKERPDALLPTLGGQTALNLAVELAERGILDKYGVQLIGAKLESIKKAEDRELFKETME 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G+ V  S LVN     +++      P +I+P       G  +   ++ +   + +   
Sbjct: 138 KAGLEVLRSRLVNNLADALETAREFGYPVIIRPSFTLGGTGGGIAFNEEELRDIVTKGLI 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVT-EIAVPKSDFYSYELKYSSLNSTHVLPA 217
            +    +LIE+ V G  E    V+ D + +     ++   D           +S  V PA
Sbjct: 198 ESPVHTVLIEESVLGWKEYELEVVRDGAGNFIVVCSIENLDPMGIHT----GDSITVAPA 253

Query: 218 K-IPLDIYKEVQRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           + +    Y+ ++  A+    AIG   G S   F  DP + ++  +E+N 
Sbjct: 254 QTLTDVEYQRMRDAAYKVIDAIGIETGGSNIQFALDPETGRMVVIEMNP 302



 Score = 55.5 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 27/189 (14%), Positives = 74/189 (39%), Gaps = 10/189 (5%)

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGS 137
             +   +  ++ D+ +  +++   G+   P    +     +     +  P +++P     
Sbjct: 649 IGTSFESIEIAEDREKFAKLLKQIGLKCPPFGTASSVEEALRVAENLGYPVLVRPSYVLG 708

Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPK 196
              + ++   Q + + + +++  + G  +LI++++ D IEL   V+ D       IA   
Sbjct: 709 GRAMAIVDTPQELEMYVKEAAVVSPGYPVLIDKFLEDAIELDVDVVSDG--KYVWIAGLM 766

Query: 197 SDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255
                 E    S +S  V  P  +   + +E++   +   +A+   G++           
Sbjct: 767 EQI--EEAGVHSGDSACVLPPVSLSEKLVEEIEETVYKLVKALKIVGVANI--QLAVKDE 822

Query: 256 KVFWLEINV 264
           +++ +E N 
Sbjct: 823 EIYIIEANP 831


>gi|148269507|ref|YP_001243967.1| carbamoyl-phosphate synthase, large subunit [Thermotoga petrophila
           RKU-1]
 gi|167006453|sp|A5IJL8|CARB_THEP1 RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|147735051|gb|ABQ46391.1| carbamoyl-phosphate synthase large subunit [Thermotoga petrophila
           RKU-1]
          Length = 1099

 Score = 78.6 bits (193), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 55/289 (19%), Positives = 110/289 (38%), Gaps = 38/289 (13%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI---------DVDRS------------VGLV 45
           G ++E + S   G     AL+ AG++V  +         D + S            +  +
Sbjct: 21  GQAAEFDYS---GTQALKALKSAGYEVIIVNSNSATIMTDPEFSDAVYIEPLTVEFLEKI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   +PD     L G    +  V    + IL+   +    + + +   + D+   K+ + 
Sbjct: 78  IEKERPDALLPTLGGQTALNLAVELAERGILDKYGVQLIGAKLESIKKAEDRELFKETME 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G+ V  S LVN     +++      P +I+P       G  +   ++ +   + +   
Sbjct: 138 KAGLEVLRSRLVNNLADALETAREFGYPVIIRPSFTLGGTGGGIAFNEEELRDIVTKGLI 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVT-EIAVPKSDFYSYELKYSSLNSTHVLPA 217
            +    +LIE+ V G  E    V+ D + +     ++   D           +S  V PA
Sbjct: 198 ESPVHTVLIEESVLGWKEYELEVVRDGAGNFIVVCSIENLDPMGIHT----GDSITVAPA 253

Query: 218 K-IPLDIYKEVQRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           + +    Y+ ++  A+    AIG   G S   F  DP + ++  +E+N 
Sbjct: 254 QTLTDVEYQRMRDAAYKVIDAIGIETGGSNIQFALDPETGRMVVIEMNP 302



 Score = 55.5 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 27/189 (14%), Positives = 74/189 (39%), Gaps = 10/189 (5%)

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGS 137
             +   +  ++ D+ +  +++   G+   P    +     +     +  P +++P     
Sbjct: 649 IGTSFESIEIAEDREKFAKLLKQIGLKCPPFGTASSVEEALRVAENLGYPVLVRPSYVLG 708

Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPK 196
              + ++   Q + + + +++  + G  +LI++++ D IEL   V+ D       IA   
Sbjct: 709 GRAMAIVDTPQELEMYVKEAAVVSPGYPVLIDKFLEDAIELDVDVVSDG--KYVWIAGLM 766

Query: 197 SDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255
                 E    S +S  V  P  +   + +E++   +   +A+   G++           
Sbjct: 767 EQI--EEAGVHSGDSACVLPPVSLSEKLVEEIEETVYKLVKALKIVGVANI--QLAVKDE 822

Query: 256 KVFWLEINV 264
           +++ +E N 
Sbjct: 823 EIYIIEANP 831


>gi|15643323|ref|NP_228367.1| carbamoyl-phosphate synthase, large subunit [Thermotoga maritima
           MSB8]
 gi|22095541|sp|Q9WZ27|CARB_THEMA RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|4981072|gb|AAD35642.1|AE001730_10 carbamoyl-phosphate synthase, large subunit [Thermotoga maritima
           MSB8]
          Length = 1099

 Score = 78.6 bits (193), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 55/289 (19%), Positives = 110/289 (38%), Gaps = 38/289 (13%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI---------DVDRS------------VGLV 45
           G ++E + S   G     AL+ AG++V  +         D + S            +  +
Sbjct: 21  GQAAEFDYS---GTQALKALKSAGYEVIIVNSNSATIMTDPEFSDAVYIEPLTVEFLEKI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   +PD     L G    +  V    + IL+   +    + + +   + D+   K+ + 
Sbjct: 78  IEKERPDALLPTLGGQTALNLAVELAERGILDKYGVQLIGAKLESIKKAEDRELFKETME 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G+ V  S LVN     +++      P +I+P       G  +   ++ +   + +   
Sbjct: 138 KAGLEVLRSRLVNNLADALETAREFGYPVIIRPSFTLGGTGGGIAFNEEELRDIVTKGLI 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVT-EIAVPKSDFYSYELKYSSLNSTHVLPA 217
            +    +LIE+ V G  E    V+ D + +     ++   D           +S  V PA
Sbjct: 198 ESPVHTVLIEESVLGWKEYELEVVRDGAGNFIVVCSIENLDPMGIHT----GDSITVAPA 253

Query: 218 K-IPLDIYKEVQRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           + +    Y+ ++  A+    AIG   G S   F  DP + ++  +E+N 
Sbjct: 254 QTLTDVEYQRMRDAAYKVIDAIGIETGGSNIQFALDPETGRMVVIEMNP 302



 Score = 55.1 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 27/189 (14%), Positives = 74/189 (39%), Gaps = 10/189 (5%)

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGS 137
             +   +  ++ D+ +  +++   G+   P    +     +     +  P +++P     
Sbjct: 649 IGTSFESIEIAEDREKFAKLLKQIGLKCPPFGTASSVEEALRVAENLGYPVLVRPSYVLG 708

Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPK 196
              + ++   Q + + + +++  + G  +LI++++ D IEL   V+ D       IA   
Sbjct: 709 GRAMAIVDTPQELEMYVKEAAVVSPGYPVLIDKFLEDAIELDVDVVSDG--KYVWIAGLM 766

Query: 197 SDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255
                 E    S +S  V  P  +   + +E++   +   +A+   G++           
Sbjct: 767 EQI--EEAGVHSGDSACVLPPVSLSEKLVEEIEETVYKLVKALKVVGVANI--QLAVKDE 822

Query: 256 KVFWLEINV 264
           +++ +E N 
Sbjct: 823 EIYIIEANP 831


>gi|223933982|ref|ZP_03625939.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus suis
           89/1591]
 gi|302024409|ref|ZP_07249620.1| acetyl-CoA carboxylase biotin carboxylase subunit [Streptococcus
           suis 05HAS68]
 gi|330833410|ref|YP_004402235.1| biotin carboxylase subunit of acetyl-CoA carboxylase [Streptococcus
           suis ST3]
 gi|223897344|gb|EEF63748.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus suis
           89/1591]
 gi|329307633|gb|AEB82049.1| biotin carboxylase subunit of acetyl-CoA carboxylase [Streptococcus
           suis ST3]
          Length = 457

 Score = 78.6 bits (193), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 76/220 (34%), Gaps = 16/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  FG   E+     + E + I +            DK+ ++  +    VPV P    
Sbjct: 77  AIHPGFGFLSENSKFATLCEEVGIKFIGPSGTVMDTMGDKINARAEMIKAQVPVIPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS-----SSWNHGD 164
            +L ++  +     I  P ++K   GG   GI  ++K + +      +     +++ +G 
Sbjct: 137 EVLTSQEALAIAEKIGYPVMLKASAGGGGKGIRKVEKAEDLVPAFESASSEAKAAFGNGA 196

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             +         +   ++ D    V  +            K             I   + 
Sbjct: 197 MYMERVVYPARHIEVQILADQHGHVIHLGERDCSLQRNNQKVL----EEAPSIAIGQTMR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + + + A  A Q++G       +FL D    + +++E+N 
Sbjct: 253 ERIGQAAVRAAQSVGYENAGTIEFLLDEAKGEFYFMEMNT 292


>gi|317405988|gb|EFV86266.1| carbamoyl-phosphate synthase large subunit [Achromobacter
           xylosoxidans C54]
          Length = 1080

 Score = 78.6 bits (193), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 39/262 (14%), Positives = 97/262 (37%), Gaps = 27/262 (10%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ------ 69
           AL D G++   +         D D S  L    L  +    ++H       +VQ      
Sbjct: 589 ALRDDGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVHKENPVGMIVQYGGQTP 648

Query: 70  ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--FTMDSQHL 123
                 LE   +P   +   +  ++ D+ R +++++  G+   P+         +     
Sbjct: 649 LKLARALEANGVPIIGTSPESIDIAEDRERFQKLLNKLGLRQPPNRTARTEGEALAHAAE 708

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVM 182
           I  P V++P        + ++ + Q +   + ++   ++   +L+++++ +  E+    +
Sbjct: 709 IGYPLVVRPSYVLGGRAMEIVHEQQDLERYMREAVKVSNDSPVLLDRFLNNATEVDVDCL 768

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D         +   +       +S  ++  + P  +  D+  E++R   +  +A+   G
Sbjct: 769 ADGETVFIGGVMEHIEQAGV---HSGDSACSLPPYSLSADVIAEIKRQTSMMAKALNVSG 825

Query: 243 ISRSDFLFDPLSRKVFWLEINV 264
           +    F        V+ LE+N 
Sbjct: 826 LMNVQFAI--QGGDVYVLEVNP 845



 Score = 57.1 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 46/285 (16%), Positives = 98/285 (34%), Gaps = 42/285 (14%)

Query: 18  SGKACASALEDAGF-------------------KVSQIDVD--RSVGLVLAHLKPDLAFN 56
           SG     AL+  G+                    V+ I+    ++V  ++   KPD    
Sbjct: 29  SGAQACKALKAEGYRTILVNSNPATIMTDPETADVTYIEPITWQAVEKIIEREKPDALLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      +L+   +    +   A   + D+ + KQ ++  G+    S +
Sbjct: 89  TMGGQTALNCALDLAHHGVLKKHNVELIGANEHAIEKAEDRQKFKQAMTDIGLESAKSGV 148

Query: 113 VNRFTMDSQ---------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
            +      +              P VI+P       G  +    +       +    +  
Sbjct: 149 AHSMDEAWEVQRRIAAEVGTSGFPAVIRPSFTMGGSGGGIAYNAEEFETICRRGLEASPT 208

Query: 164 DQLLIEQYVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IP 220
            +LLIE+ + G  E    V+ D + + +   ++   D           +S  V PA+ + 
Sbjct: 209 SELLIEESLLGWKEFEMEVVRDKADNCIIVCSIENLDPMGVHT----GDSITVAPAQTLT 264

Query: 221 LDIYKEVQRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
              Y+ ++  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 DKEYQIMRNASIAVLREIGVDTGGSNVQFAVNPKNGRMIVIEMNP 309


>gi|313680545|ref|YP_004058284.1| acetyl-CoA carboxylase, biotin carboxylase [Oceanithermus profundus
           DSM 14977]
 gi|313153260|gb|ADR37111.1| acetyl-CoA carboxylase, biotin carboxylase [Oceanithermus profundus
           DSM 14977]
          Length = 446

 Score = 78.6 bits (193), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 35/219 (15%), Positives = 79/219 (36%), Gaps = 18/219 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+     +     I +         +  DK  ++++    GVP+ P    
Sbjct: 77  AIHPGYGFLAENAQFAEMTAEHGITFIGPTPENMRMLGDKATARRIAREAGVPIVPGTDA 136

Query: 114 NRFTMDS---QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQL 166
                ++      I  P ++K   GG   G+ V+   + +   +L    ++ +     ++
Sbjct: 137 LESVEEALAAASEIGYPVILKASAGGGGRGMRVVHNPEDLENAVLQAQEEARAAFGNPEI 196

Query: 167 LIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
            +E+YV+    +   V+GD         V         ++          P+ +P ++ +
Sbjct: 197 YLEKYVEEPKHVEVQVLGDGE------RVVHLWERDCSIQRRHQKLLEEAPSILPDEVRE 250

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +   A    + IG       +FL D      +++E+N 
Sbjct: 251 GLVSAAVKLAEHIGYTSAGTLEFLVD-REGHYYFIEMNT 288


>gi|259418886|ref|ZP_05742803.1| methylcrotonoyl-CoA carboxylase subunit alpha [Silicibacter sp.
           TrichCH4B]
 gi|259345108|gb|EEW56962.1| methylcrotonoyl-CoA carboxylase subunit alpha [Silicibacter sp.
           TrichCH4B]
          Length = 645

 Score = 78.6 bits (193), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 38/206 (18%), Positives = 71/206 (34%), Gaps = 20/206 (9%)

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT----MDSQHLISPPY 128
           E   + +      A      K  +K ++   GVPV P    +        +    I  P 
Sbjct: 97  EAAGLAFIGPSASAIRKMGLKDAAKALMEEAGVPVVPGYHGDTQDAGFLAEQAESIGYPV 156

Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQLLIEQYV-DGIELTCGVMG 183
           +IK + GG   G+ +++  +     L  +            +LIE+Y+     +   V G
Sbjct: 157 LIKAVAGGGGKGMRLVEDPRDFNDALASAQGEATTSFGNSAVLIEKYIQKPRHIEVQVFG 216

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRG 242
           D +  V              L+          PA  +  ++   + + A  A +AIG  G
Sbjct: 217 DGTSAV------HLFERDCSLQRRHQKVIEEAPAPGMTEEMRAAMGQAAVRAAEAIGYAG 270

Query: 243 ISRSDFLFDPLSR----KVFWLEINV 264
               +F+ D          +++E+N 
Sbjct: 271 AGTVEFIVDGSDGLRADGFWFMEMNT 296


>gi|148543374|ref|YP_001270744.1| phosphoribosylaminoimidazole carboxylase ATPase subunit
           [Lactobacillus reuteri DSM 20016]
 gi|148530408|gb|ABQ82407.1| 5-(carboxyamino)imidazole ribonucleotide synthase [Lactobacillus
           reuteri DSM 20016]
          Length = 353

 Score = 78.6 bits (193), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 42/207 (20%), Positives = 87/207 (42%), Gaps = 15/207 (7%)

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQ 121
           E+  + A+ ++ +  Y   G      + +++R K  +   GV   P + V+      D+ 
Sbjct: 57  ENVDLNALEDVQDRVYLPQGTNLLYTTKNRLREKNFLRQAGVKTAPFMAVHTSAELKDAV 116

Query: 122 HLISPPYVIKPLKGG-SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTC 179
             I  P V+K  +GG    G  V++       DL + +        ++E +V    E + 
Sbjct: 117 KKIGYPAVLKTSEGGYDGHGQEVLRNKD----DLDKCAPILATGDCILEGWVPFNRECSV 172

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
            V  +   ++T   V ++  +   L  S      ++PA+I  ++ ++ Q++A    QAI 
Sbjct: 173 MVGRNEDGEITAFPVSENIHHDEILHLS------IVPARISSELQQKAQKIAVQIAQAIN 226

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQP 266
            RGI   +        +++  E+  +P
Sbjct: 227 LRGILGVEMFVT-DDGEIYINELAPRP 252


>gi|21229990|ref|NP_635907.1| acetyl-CoA carboxylase biotin carboxylase subunit [Xanthomonas
           campestris pv. campestris str. ATCC 33913]
 gi|66766866|ref|YP_241628.1| acetyl-CoA carboxylase biotin carboxylase subunit [Xanthomonas
           campestris pv. campestris str. 8004]
 gi|21111506|gb|AAM39831.1| biotin carboxylase subunit of acetyl CoA carboxylase [Xanthomonas
           campestris pv. campestris str. ATCC 33913]
 gi|66572198|gb|AAY47608.1| biotin carboxylase subunit of acetyl CoA carboxylase [Xanthomonas
           campestris pv. campestris str. 8004]
          Length = 455

 Score = 78.6 bits (193), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 41/225 (18%), Positives = 83/225 (36%), Gaps = 27/225 (12%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+      +E     +         L  DK+ + + + + GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAERVEESGFIFIGPKADTIRLMGDKVEAIRAMKAAGVPCVPGSGG 136

Query: 111 -----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWN 161
                I+ N         I  P +IK   GG   G+ V+  + ++   +     ++ +  
Sbjct: 137 PLGDDIVAN---TKIAREIGYPVIIKAAGGGGGRGMRVVHSEAALKAAIETTKSEAKAAF 193

Query: 162 HGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-I 219
             DQ+ +E++++    +   V+ D   +   +            K          PA  I
Sbjct: 194 SNDQVYMEKFLENPRHVEIQVLADGQGNAIHLGERDCSMQRRHQK-----VVEEAPAPGI 248

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             ++  E+ ++   A   IG RG    +FLF     + +++E+N 
Sbjct: 249 SEELRAEIGKVCVDACIRIGYRGAGTFEFLF--EGGRFYFIEMNT 291


>gi|58696837|ref|ZP_00372360.1| propionyl-CoA carboxylase, alpha subunit [Wolbachia endosymbiont of
           Drosophila simulans]
 gi|58698351|ref|ZP_00373266.1| propionyl-CoA carboxylase, alpha subunit [Wolbachia endosymbiont of
           Drosophila ananassae]
 gi|58535141|gb|EAL59225.1| propionyl-CoA carboxylase, alpha subunit [Wolbachia endosymbiont of
           Drosophila ananassae]
 gi|58536957|gb|EAL60121.1| propionyl-CoA carboxylase, alpha subunit [Wolbachia endosymbiont of
           Drosophila simulans]
          Length = 664

 Score = 78.6 bits (193), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 32/220 (14%), Positives = 75/220 (34%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+      L+   I +         ++ +K+ +K+     GV V P    
Sbjct: 54  AVHPGYGFLAENPDFPRALQKHNIDFIGPSAETIEVTANKITAKEAAKKAGVNVVPGYMG 113

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
            I            I  P ++K   GG   G+ ++   + I L       ++        
Sbjct: 114 KISDAAHAAQVAEEIGFPVMLKAASGGGGKGMRIVNSKKEIELAFTSATNEAEKSFKDGS 173

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+Y++    +   ++ D   ++  +   +        K             I  ++ 
Sbjct: 174 IFIEKYIELPRHIEIQIIADKYGNIVCLGERECSIQRNNQKII----EETPSPFISEEVR 229

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +++        + +G       +F+ D   +  ++LE+N 
Sbjct: 230 QKMYVQCVSLAKQVGYFSAGTVEFVVDK-DQNFYFLEVNT 268


>gi|227523552|ref|ZP_03953601.1| carbamoyl-phosphate synthase, glutamine-hydrolyzing [Lactobacillus
           hilgardii ATCC 8290]
 gi|227089317|gb|EEI24629.1| carbamoyl-phosphate synthase, glutamine-hydrolyzing [Lactobacillus
           hilgardii ATCC 8290]
          Length = 1021

 Score = 78.6 bits (193), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 50/273 (18%), Positives = 96/273 (35%), Gaps = 31/273 (11%)

Query: 20  KACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFNVL 58
           +AC S L + G+ V  ++ +                      S+  +L    PD     L
Sbjct: 32  QACLS-LREEGYSVILVNSNPATIMTDDEIADKVYLDPLTVPSLKKILEKKHPDAILPTL 90

Query: 59  HGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
            G  G +  V+     IL+ L I    + +     + D+ + K ++     P+  S  V 
Sbjct: 91  GGQTGLNLAVELAKDGILDKLGIELLGTSLHTINQAEDREQFKDLMKELHQPIPDSKTVY 150

Query: 115 RFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                +D  H I  P +I+P       G  +   D  +   L +  + +   + LIE+ +
Sbjct: 151 NLEDGLDFAHEIDYPVIIRPAYTLGGTGGGIAHNDDEMKTILNRGLTMSPSTECLIEKSI 210

Query: 173 DG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
            G  E+   VM D     + I V   + +     ++  +        +    Y+ ++  +
Sbjct: 211 AGYKEIEFEVMRDHHG--SSIIVTGMENFDPVGVHTGDSIVFAPTQTLTDKEYQRLRDAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
                A+   G        DP S   + +E+N 
Sbjct: 269 LTIVNALKIEGGCNVQLAQDPTSENYYVIEVNP 301



 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 45/296 (15%), Positives = 101/296 (34%), Gaps = 37/296 (12%)

Query: 22  CASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH-----GNFGEDGL 67
           C  A++ AG     I         D   S  L    L  D   NV++     G   E G 
Sbjct: 579 CVKAIQAAGKNAIIINNNPETVSTDFSISDKLYFEPLDIDSVMNVINLEKPMGVIVEFGG 638

Query: 68  VQAI-----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGV--PVCPSILVNRFTMDS 120
             AI     L    +    + +     + ++   + ++    +  P   + +        
Sbjct: 639 QTAINLTEELTKHGVQILGTSMHGIEETENRHDFEDLLIDQNIAHPQGDTAMNGHEAHAI 698

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            + +  P +++P       G+ V+   + +   L+ +   + G  +LI+QY+ G E    
Sbjct: 699 ANKLGYPVLVRPSFVLGGKGMAVVHNGEELDEYLVPALKASAGQPILIDQYISGTECEVD 758

Query: 181 VMGDAS---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           ++ D     +      +  S  +S        +     P  +  +  +++  +A    + 
Sbjct: 759 ILSDGKDVFVPGIMEHLEGSGIHS------GDSIAMYPPQHLTDEQKEKIVSIATKIGKK 812

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +   G+    F+    +  V+ +E+N +   T     P M+        +L   ++
Sbjct: 813 VHAVGMMNIQFI---CANDVYVIEVNPRASRT----VPFMSKITKMHLAQLATQLI 861


>gi|229591325|ref|YP_002873444.1| biotin carboxylase subunit of acetyl-CoA carboxylase [Pseudomonas
           fluorescens SBW25]
 gi|229363191|emb|CAY50252.1| biotin carboxylase subunit of acetyl-CoA carboxylase [Pseudomonas
           fluorescens SBW25]
          Length = 641

 Score = 78.6 bits (193), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 43/220 (19%), Positives = 78/220 (35%), Gaps = 19/220 (8%)

Query: 58  LHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
           +H  +G   E+      +E   + +      A      K  +K ++ + GVP+ P     
Sbjct: 80  IHPGYGFLSENAGFARAIEAAGLIFLGPPASAIDAMGSKSAAKALMETAGVPLVPGYHGE 139

Query: 115 RFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQL 166
              +D    +   I  P ++K   GG   G+ V++    +   L  +           Q+
Sbjct: 140 AQDLDTFRAACERIGYPVLLKATAGGGGKGMKVVEDVSQLAEALASAQREALSSFGNGQM 199

Query: 167 LIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIY 224
           L+E+Y +    +   V  D       +            K          PA  + ++  
Sbjct: 200 LVEKYLLKPRHVEIQVFADQHGHCLYLNERDCSIQRRHQK-----VVEEAPAPGLSVEQR 254

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K +   A  A QAIG  G    +FL D    + F++E+N 
Sbjct: 255 KAMGEAAVRAAQAIGYVGAGTVEFLLDAR-GEFFFMEMNT 293


>gi|255533700|ref|YP_003094072.1| acetyl-CoA carboxylase, biotin carboxylase [Pedobacter heparinus
           DSM 2366]
 gi|255346684|gb|ACU06010.1| acetyl-CoA carboxylase, biotin carboxylase [Pedobacter heparinus
           DSM 2366]
          Length = 446

 Score = 78.6 bits (193), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 79/221 (35%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+    ++     I +  +         DK  +K+ +   GVP  P    
Sbjct: 77  AIHPGYGFLSENAKFSSVCRDYGIKFIGATPEQINSMGDKASAKETMKKAGVPTIPGSEG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS-----SSWNHGD 164
            +   +  + + + I  P ++K   GG   G+ V+ KD+        +     +++ +  
Sbjct: 137 LVENIKEGIVTANEIGYPVILKATAGGGGRGMRVVWKDEDFENAWDSARQESGAAFGNDG 196

Query: 165 QLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
             L E+Y+ D   +   ++GD       ++           K             +  ++
Sbjct: 197 LYL-EKYIEDPRHIEIQIIGDQYGKACHLSERDCSIQRRHQK----LVEEAPSPFMTPEL 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +   A     A+   G    +FL D   R  +++E+N 
Sbjct: 252 RERMGEAAIKGAIAVQYEGAGTIEFLVDKH-RNFYFMEMNT 291


>gi|210634645|ref|ZP_03298197.1| hypothetical protein COLSTE_02120 [Collinsella stercoris DSM 13279]
 gi|210158717|gb|EEA89688.1| hypothetical protein COLSTE_02120 [Collinsella stercoris DSM 13279]
          Length = 1091

 Score = 78.6 bits (193), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 45/278 (16%), Positives = 96/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG      L++ G++V  +         D                +  V+   +PD    
Sbjct: 29  SGAQACKVLKEDGYEVVLVNSNPATIMTDPGLADRTYVEPITAEFIERVIERERPDALLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--S 110
            L G  G +  V+     +LE   +      + A     D+    + ++  G+ V     
Sbjct: 89  TLGGQTGLNAAVELARAGVLETYGVEMIGCDLDAIERGEDRKLFNEAMAEIGLEVARSGY 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  ++       P V++P       G  +   +  +   + Q    +   ++L+E+
Sbjct: 149 AYSVEDALNIVETTGYPCVLRPSFTMGGAGGGIAHDEAELIEIVTQGLELSPAGEVLVEE 208

Query: 171 YVDG-IELTCGVMGDASL-DVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            ++G  E    VM D +   +   ++   D           +S  V PA+ +    Y+ +
Sbjct: 209 SIEGWKEYEMEVMRDRAGNGIIVCSIENLDPMGVHT----GDSITVAPAQTLSDLEYQRM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RVASLAILEKIGVETGGSNVQFAVNPQNGRLIVIEMNP 302



 Score = 58.2 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/225 (12%), Positives = 78/225 (34%), Gaps = 12/225 (5%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ--HLISPPYVIKPL 133
            +    +   A   + D+ R   ++   GV   P+ +   F         I  P +++P 
Sbjct: 671 GVTIMGTQPDAIDFAEDRERFSALLDRLGVMYPPAGMATSFEEAEAVAARIGYPLLVRPS 730

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT-CGVMGDASLDVTEI 192
                 G+++    + +   + +++  +    + ++++++G   +    + D        
Sbjct: 731 YVLGGRGMMIAYDAEHLREYMAEATRVSPDHPIYLDRFLEGAYESDVDALCDGEEVYIGG 790

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            +   +       +S  ++T + P      +   ++        A+G RG+   +  +  
Sbjct: 791 ILEHIEEAGI---HSGDSATCIPPFSFSDSLMARLRETTRKIALALGVRGL--VNVQYAI 845

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
               ++ +E N +   T     P ++   G         ++  AS
Sbjct: 846 KGETIYVIEANPRASRT----VPFISKATGVPLARCAARIMAGAS 886


>gi|299136670|ref|ZP_07029853.1| urea carboxylase [Acidobacterium sp. MP5ACTX8]
 gi|298601185|gb|EFI57340.1| urea carboxylase [Acidobacterium sp. MP5ACTX8]
          Length = 1198

 Score = 78.6 bits (193), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 42/256 (16%), Positives = 88/256 (34%), Gaps = 32/256 (12%)

Query: 58  LHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
           +H  +G   E+           I +             K  ++    +CGVP+ P   + 
Sbjct: 78  IHPGYGFLSENIQFARECAARGITFIGPAPEHIEAFALKHTARATAKTCGVPLLPGTGLL 137

Query: 115 RFTMDS---QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQLL 167
               D+     L+  P ++K   GG  +G+ V    + +          +        + 
Sbjct: 138 SSLEDALAQAELLKYPVMLKSSGGGGGIGMRVCHSAEQLGEAYESVLRLSRANFGDSGVY 197

Query: 168 IEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYK 225
           +E++V     +   + GD   +V  +            +          PA  +     +
Sbjct: 198 LEKFVSRARHIEVQIFGDGKGNVLALGE-----RDCSAQRRHQKVLEETPAPGLTEATRE 252

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYA 281
           +++  A L  +A+        +F++D  + + ++LE+N +     G+T            
Sbjct: 253 QLRSAAILLAKAVNYASAGTVEFIYDDDTNEFYFLEVNTRLQVEHGVTE--------EVT 304

Query: 282 GYSFRELLLWMVEDAS 297
           G    +L+ WMV  AS
Sbjct: 305 GI---DLVEWMVRQAS 317


>gi|281357004|ref|ZP_06243494.1| carbamoyl-phosphate synthase, large subunit [Victivallis vadensis
           ATCC BAA-548]
 gi|281316562|gb|EFB00586.1| carbamoyl-phosphate synthase, large subunit [Victivallis vadensis
           ATCC BAA-548]
          Length = 1069

 Score = 78.6 bits (193), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 61/317 (19%), Positives = 110/317 (34%), Gaps = 57/317 (17%)

Query: 18  SGKACASALEDAGFKVS----------------------QIDVDRSVGLVLAHLKPDLAF 55
           SG     AL   G++V                        + VD S+  ++A  +PD   
Sbjct: 29  SGTQACKALRALGYEVVLANSNPATIMTDPGMADHTYIEPLTVD-SIEKIIAKERPDALL 87

Query: 56  NVLHGNFG-------EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
             L G           DG +   LE   +      + A     D++  K+ ++  GVP+ 
Sbjct: 88  PNLGGQTALNLAISLHDGKI---LEKYGVQVIGVDLEAIKRGEDRIIFKETMNRLGVPMA 144

Query: 109 PSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQL 166
            S               +  P V++P       G  ++   + +   + +  + +   Q+
Sbjct: 145 KSEPCYSVEEAEKIASELGYPVVLRPAYTMGGTGGGIVYNVEELREVVARGLAASLVGQV 204

Query: 167 LIEQYVDG-IELTCGVMGDASL-DVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDI 223
           L+E+   G  EL   V+ DA    +T   +   D           +S  V P   +P  +
Sbjct: 205 LVEECALGWEELELEVVRDAKGNKITVCFIENVDPMGVHT----GDSFCVAPMLTVPESV 260

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI--------FP 275
            K++Q  A+    A+G  G +   F  +    ++  +EIN +   T  S         FP
Sbjct: 261 QKQLQDYAYRIVDAVGVTGGTNVQFAHNREDGRIIVIEINPR---TSRSSALASKATGFP 317

Query: 276 EMA----AYAGYSFREL 288
             +      AG +  E+
Sbjct: 318 IASVSTQLAAGITLDEM 334



 Score = 45.1 bits (106), Expect = 0.012,   Method: Composition-based stats.
 Identities = 27/196 (13%), Positives = 70/196 (35%), Gaps = 8/196 (4%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ--HLISPPYV 129
           L+   +    +      L+ D+   ++ + + G+    S          Q    I  P +
Sbjct: 648 LKDAGVKIIGTQPEGIRLAEDREYFRERMIALGIKQPQSGTARSLDEAVQLGREIGYPVM 707

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLD 188
           ++P       G+ V+  ++ +    +++   +    +LI++++D  IE     + D    
Sbjct: 708 VRPSFVLGGRGMAVLYDEEMLVRYAIEAIQVSPEYPMLIDRFLDNAIECEVDAISDGEDT 767

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                +   +       +S  ++  + P  +P    + ++  A    +    +GI    F
Sbjct: 768 FVASVMEHIELAGI---HSGDSACSIPPVTLPEKHIRAIEEQAAAIAKDFRVKGILNVQF 824

Query: 249 LFDPLSRKVFWLEINV 264
                  +V+ +E N 
Sbjct: 825 AV--CEDQVWIIEANP 838


>gi|86159932|ref|YP_466717.1| carbamoyl phosphate synthase large subunit [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85776443|gb|ABC83280.1| carbamoyl-phosphate synthase large subunit [Anaeromyxobacter
           dehalogenans 2CP-C]
          Length = 1067

 Score = 78.6 bits (193), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 55/325 (16%), Positives = 103/325 (31%), Gaps = 73/325 (22%)

Query: 18  SGKACASALEDAGFK----------------------VSQIDVDRSVGLVLAHLKPDLAF 55
           SG     AL   G++                      V  +DV  ++  ++   +PD   
Sbjct: 29  SGTQACKALRKLGYRIVLVNSNPATIMTDPGMADATYVEPLDV-ETLTRIIEKERPDALL 87

Query: 56  NVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
             L G  G +   +     +L+   +      + A     D+   K+ ++  G+    S 
Sbjct: 88  PNLGGQTGLNLSSELARKGVLDQYGVRVIGVNLEAIRRGEDRETFKETMTRLGIETARSE 147

Query: 112 LVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
           +       M +   +  P V++P       G       + +     +    +   Q+L+E
Sbjct: 148 IATTLEQAMAAGQRLGFPLVVRPAYTMGGTGGGFAYNVEELEEIAARGLLASPVSQVLVE 207

Query: 170 QYV--------------DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215
           + V               G ++T   + +    V  + V   D Y      +        
Sbjct: 208 ESVLGWEELELEVVRDAKGRKITVCFIEN----VDAMGVHTGDSYCTAPMLT-------- 255

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI-- 273
              IP ++   +Q  A+    AI   G +   F  DP + +V  +EIN +   T  S   
Sbjct: 256 ---IPPELQARLQDQAYRIVDAIEVIGGTNVQFAHDPRTGRVIVIEINPR---TSRSSAL 309

Query: 274 ------FPEM----AAYAGYSFREL 288
                 FP         AG +  E+
Sbjct: 310 ASKATGFPIALVSSMLAAGLTLDEI 334



 Score = 60.9 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 34/241 (14%), Positives = 81/241 (33%), Gaps = 13/241 (5%)

Query: 27  EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           +   F+   ++    V  +    +PD       G    +   Q  LE   +    +    
Sbjct: 607 DRLYFEPVTVE---DVLSIYRKERPDGVMVQFGGQTPLNIARQ--LEQAGVRILGTSPET 661

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVI 144
             L+ D+ R   VV   G+P   S L       +     +  P +++P       G+ V+
Sbjct: 662 IDLAEDRERFSAVVRKLGIPQPESGLARDLDEALALAGRMGYPLIVRPSYVLGGRGMEVV 721

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYE 203
             ++ +   + ++   +    L ++++ VD +E     + D +       +   +     
Sbjct: 722 HDEEMLREYVRKAVDVSPERPLYVDRFLVDAVETEADAICDGTEAFVPAVMEHIELAGV- 780

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
             +S  ++  + P  +  +    ++         +G  G+    +        V+ LE N
Sbjct: 781 --HSGDSACVIPPVNVAPEHLATIEDYTRRLALELGVVGLINVQYAI--ADGIVYVLEAN 836

Query: 264 V 264
            
Sbjct: 837 P 837


>gi|319780977|ref|YP_004140453.1| pyruvate carboxylase [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317166865|gb|ADV10403.1| pyruvate carboxylase [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 1152

 Score = 78.6 bits (193), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 78/221 (35%), Gaps = 18/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E            I +            +K+ ++ +    GVPV P+   
Sbjct: 85  AIHPGYGLLSESPEFADACAEAGITFIGPRPDTMRRLGNKVAARNLAIEVGVPVIPATDP 144

Query: 114 NRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGDQ 165
               M++       I  P ++K   GG   G+  I+ +  +  ++     ++ +    D+
Sbjct: 145 LPDDMETVKTLAKEIGYPVMLKASWGGGGRGMRAIRAEADLAREVTEGKREAKAAFGKDE 204

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           + +E+ ++    +   V+GD   +   +            K          PA  + +  
Sbjct: 205 VYLEKLIERARHVEVQVLGDTHGNAVHLFERDCSIQRRNQK-----VVERAPAPYLEISQ 259

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +E+   A    +     G    +FL D  + K +++E+N 
Sbjct: 260 REELCGHALKIARETSYIGAGTVEFLQDADTGKFYFIEVNP 300


>gi|310826343|ref|YP_003958700.1| pyruvate carboxylase [Eubacterium limosum KIST612]
 gi|308738077|gb|ADO35737.1| pyruvate carboxylase [Eubacterium limosum KIST612]
          Length = 1142

 Score = 78.6 bits (193), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 81/221 (36%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+       E   I +            DK++SK V  S  VP  P +  
Sbjct: 80  AIHPGYGFLSENPEFARRCEEEGIAFIGPTHTMMEQMGDKIQSKIVAKSVNVPTIPGVEK 139

Query: 112 --LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGDQ 165
               +R   +   +   P ++K   GG   G+ +++ ++ +       + +++       
Sbjct: 140 PITSDREAAEFAKVAGYPIMLKAAAGGGGRGMRIVRDEKDLLKEYHSAMSEATKAFGDGT 199

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDI 223
           + +E+Y++    +   ++GDA  +V  +            K          P+  I  + 
Sbjct: 200 IFVEKYLEEPKHIEVQILGDAYGNVVHLFERDCSIQRRHQK-----IIEFTPSLSISEEQ 254

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +   A    +A+  R     +FL D      +++E+N 
Sbjct: 255 RQAICADALKLAKAVNYRNAGTIEFLVDKKGDH-YFIEMNP 294


>gi|259502499|ref|ZP_05745401.1| acetyl-CoA carboxylase [Lactobacillus antri DSM 16041]
 gi|259169525|gb|EEW54020.1| acetyl-CoA carboxylase [Lactobacillus antri DSM 16041]
          Length = 458

 Score = 78.6 bits (193), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 78/220 (35%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E     A  E   +          AL  DK +++  +++ G+PV      
Sbjct: 92  AIHPGYGFLSESPEFAAACEKNGLKLIGPSSQVIALLGDKEQARLTMAAAGLPVVKGSTQ 151

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL----DLLQSSSWNHGDQ 165
            I      +D    +  P ++K   GG   G+ ++     +         ++ +     +
Sbjct: 152 VITKVADALDQASQLGYPVMLKASAGGGGKGMRIVHSPAEMKANFPVAQEEAMASFSSKE 211

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +EQY+     +   ++ D   +VT +        +   K           A +  D+ 
Sbjct: 212 MYLEQYLPNPRHIEVQIVADRYGNVTALGERDCTIQARHQK----VIEEAPAAVLSDDVR 267

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            E+ +    A   +   G    +FL++      +++E+N 
Sbjct: 268 AEMLKRTETAVSRLHYEGAGTIEFLYN-RDGSFYFMEMNT 306


>gi|296120337|ref|YP_003628115.1| acetyl-CoA carboxylase, biotin carboxylase [Planctomyces
           limnophilus DSM 3776]
 gi|296012677|gb|ADG65916.1| acetyl-CoA carboxylase, biotin carboxylase [Planctomyces
           limnophilus DSM 3776]
          Length = 448

 Score = 78.6 bits (193), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 36/219 (16%), Positives = 78/219 (35%), Gaps = 17/219 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     +     I +      A A   DK+ +K++  S  V + P    
Sbjct: 77  AIHPGYGFLSENEHFAEVCRSCNIEFIGPPHEAMAKLGDKVTAKEIAKSAKVNLVPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD----QSIPLDLLQSSSWNHGDQ 165
            I      +   + I  P +IK   GG   G+ V + D      +    L++    +   
Sbjct: 137 LITDEETAIGIANKIGYPVLIKATAGGGGKGMRVARNDITLKAGLKQAALEAEKAFNNAG 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+Y++    +   ++ D   +V  +            K             +P ++ 
Sbjct: 197 VYLEKYIENPRHVEVQILADQHGEVLHLWERDCSTQRRHQKMI----EESPAPNLPNNVR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
           +E+ + A    +  G       +F+ D      +++E+N
Sbjct: 253 EELCKAAVRLVKTAGYTNAGTCEFIVDK-DNNFYFIEVN 290


>gi|154484782|ref|ZP_02027230.1| hypothetical protein EUBVEN_02500 [Eubacterium ventriosum ATCC
           27560]
 gi|149734630|gb|EDM50547.1| hypothetical protein EUBVEN_02500 [Eubacterium ventriosum ATCC
           27560]
          Length = 1065

 Score = 78.6 bits (193), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 33/225 (14%), Positives = 84/225 (37%), Gaps = 13/225 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTMDSQHLISPPYV 129
           L  + +P   +       + D+    +++  C +P      +       +  + +  P +
Sbjct: 647 LMKMGVPILGTKAEDVDAAEDRELFDEILEKCSIPRPTGGTVFTAEEAKEVANRLGYPVL 706

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           ++P       G+ +   D+ +   +   +       +L+++Y+ G E+    + D     
Sbjct: 707 VRPSYVLGGQGMQIATCDEEVEEFMEIINRIAQDHPILVDKYLQGTEVEVDAICDG---- 762

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           T+I +P    +       S +S  V PA  +  +I   ++       +++  +G+    F
Sbjct: 763 TDILIPGVMEHIERAGVHSGDSISVYPAYSLSKEIIDTIEDYTEKLARSLHVKGMINIQF 822

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +      KV+ +E+N +   T     P ++   G    +L    +
Sbjct: 823 IV--CDGKVYVIEVNPRSSRT----VPYISKVTGIPIVKLATKCI 861



 Score = 52.8 bits (126), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 45/286 (15%), Positives = 99/286 (34%), Gaps = 33/286 (11%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQID-------VDRSVGL--------------V 45
           G ++E + +   G     +L++ G +V  ++        D+ +                +
Sbjct: 21  GQAAEFDYA---GTQACRSLKEEGLEVVLVNSNPATIMTDKDIADKVYIEPLTVPVLEKI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   KPD     L G  G +  ++      LE  E     +       + D++  K+ + 
Sbjct: 78  IEKEKPDSILPTLGGQAGLNLAMEIAETDFLEKHECRLIGTTSETIKKAEDRLEFKETME 137

Query: 102 SCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G P  PS++V      +   + I  P V++P       G  +      +   L     
Sbjct: 138 KIGEPCAPSLVVENVEDGIAFTNKIGYPVVLRPAYTLGGSGGGIAHNQVELVEILENGLR 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   Q+L+E+ + G  E+   VM D++ +   I V   +       ++  +        
Sbjct: 198 LSRVGQVLVERCIAGWKEVEYEVMRDSAGN--CITVCNMENIDPVGVHTGDSIVVAPSQT 255

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +    ++ ++  A      +   G     +   P S +   +E+N 
Sbjct: 256 LGDKEHQMLRTSALNIINELNITGGCNVQYALHPESFEYCVIEVNP 301


>gi|52141541|ref|YP_085288.1| pyruvate carboxylase [Bacillus cereus E33L]
 gi|51975010|gb|AAU16560.1| pyruvate carboxylase [Bacillus cereus E33L]
          Length = 1148

 Score = 78.6 bits (193), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 31/243 (12%), Positives = 83/243 (34%), Gaps = 21/243 (8%)

Query: 35  QIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSM 91
            ID    +  ++   K +   + +H  +G   E+       E   I +         +  
Sbjct: 62  PIDAYLDIEGIIEIAKSNHV-DAIHPGYGFLSENIQFAKRCEEEGIIFIGPKSKHLDMFG 120

Query: 92  DKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147
           DK++++       +PV P     +       +       P +IK   GG   G+ +++  
Sbjct: 121 DKVKARTQAQLAQIPVIPGSDGPVDSLEEVKEFAEKYDYPIIIKASLGGGGRGMRIVRNS 180

Query: 148 QSIPL----DLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSY 202
           + +         ++ +    D++ +E++V+    +   ++ D   +V  +          
Sbjct: 181 EELRESYNRAKSEAKAAFGNDEVYVEKFVEKPKHIEVQILADEEGNVVHLYE-----RDC 235

Query: 203 ELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
            ++        + P   +  D+ + +   A    + +        +FL        +++E
Sbjct: 236 SVQRRHQKVVEIAPSVSLSDDLRQRICDAAVKLTKNVNYLNAGTVEFLV--KDDNFYFIE 293

Query: 262 INV 264
           +N 
Sbjct: 294 VNP 296


>gi|258543141|ref|YP_003188574.1| acetyl-CoA carboxylase biotin carboxylase subunit [Acetobacter
           pasteurianus IFO 3283-01]
 gi|256634219|dbj|BAI00195.1| acetyl-CoA carboxylase biotin carboxylase subunit [Acetobacter
           pasteurianus IFO 3283-01]
 gi|256637279|dbj|BAI03248.1| acetyl-CoA carboxylase biotin carboxylase subunit [Acetobacter
           pasteurianus IFO 3283-03]
 gi|256640331|dbj|BAI06293.1| acetyl-CoA carboxylase biotin carboxylase subunit [Acetobacter
           pasteurianus IFO 3283-07]
 gi|256643388|dbj|BAI09343.1| acetyl-CoA carboxylase biotin carboxylase subunit [Acetobacter
           pasteurianus IFO 3283-22]
 gi|256646443|dbj|BAI12391.1| acetyl-CoA carboxylase biotin carboxylase subunit [Acetobacter
           pasteurianus IFO 3283-26]
 gi|256649496|dbj|BAI15437.1| acetyl-CoA carboxylase biotin carboxylase subunit [Acetobacter
           pasteurianus IFO 3283-32]
 gi|256652482|dbj|BAI18416.1| acetyl-CoA carboxylase biotin carboxylase subunit [Acetobacter
           pasteurianus IFO 3283-01-42C]
 gi|256655540|dbj|BAI21467.1| acetyl-CoA carboxylase biotin carboxylase subunit [Acetobacter
           pasteurianus IFO 3283-12]
          Length = 465

 Score = 78.6 bits (193), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 77/221 (34%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E   I +      +  L  DK+ +KQ + + GVP  P    
Sbjct: 82  AIHPGYGFLSENSDFAEAVEKAGITFIGPTPESIRLMGDKITAKQTMQASGVPCVPGSDG 141

Query: 112 LVNRFT---MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGD 164
            +       +D  + +  P ++K   GG   G+ V+     +   +     ++       
Sbjct: 142 PLPEDENAILDLANAVGFPVIVKASGGGGGRGMRVVWSSDELIKAVALTRKEAQQAFGNP 201

Query: 165 QLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            L +E+++     +   V+ D       +            K          P  IP ++
Sbjct: 202 TLYLERFMQKPRHIEIQVLCDTHGTALWLGARDCSLQRRHQKVL----EEAPPPGIPPEL 257

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             E+      A + IG RG    +FL+        ++E+N 
Sbjct: 258 IAEIGARCAQACRNIGYRGAGTFEFLY--EDGIFAFIEMNT 296


>gi|228987090|ref|ZP_04147215.1| Pyruvate carboxylase [Bacillus thuringiensis serovar tochigiensis
           BGSC 4Y1]
 gi|228772684|gb|EEM21125.1| Pyruvate carboxylase [Bacillus thuringiensis serovar tochigiensis
           BGSC 4Y1]
          Length = 1148

 Score = 78.6 bits (193), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 31/243 (12%), Positives = 83/243 (34%), Gaps = 21/243 (8%)

Query: 35  QIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSM 91
            ID    +  ++   K +   + +H  +G   E+       E   I +         +  
Sbjct: 62  PIDAYLDIEGIIEIAKSNHV-DAIHPGYGFLSENIQFAKRCEEEGIIFIGPKSKHLDMFG 120

Query: 92  DKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147
           DK++++       +PV P     +       +       P +IK   GG   G+ +++  
Sbjct: 121 DKVKARTQAQLAQIPVIPGSDGPVDSLEEVKEFAEKYDYPIIIKASLGGGGRGMRIVRNS 180

Query: 148 QSIPL----DLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSY 202
           + +         ++ +    D++ +E++V+    +   ++ D   +V  +          
Sbjct: 181 EELRESYNRAKSEAKAAFGNDEVYVEKFVEKPKHIEVQILADEEGNVVHLYE-----RDC 235

Query: 203 ELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
            ++        + P   +  D+ + +   A    + +        +FL        +++E
Sbjct: 236 SVQRRHQKVVEIAPSVSLSDDLRQRICDAAVKLTKNVNYLNAGTVEFLV--KDDNFYFIE 293

Query: 262 INV 264
           +N 
Sbjct: 294 VNP 296


>gi|145910320|gb|ABP98813.1| chloroplast biotin carboxylase [Gossypium hirsutum]
          Length = 535

 Score = 78.6 bits (193), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 80/220 (36%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
           +LH  +G   E+ +   +     I +      +  +  DK  +++ + + GVP  P    
Sbjct: 144 MLHPGYGFLSENAVFVEMCRDHRINFIGPNPDSIRVMGDKSTARETMKNAGVPTVPGSDG 203

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS----IPLDLLQSSSWNHGDQ 165
            +      +   H I  P +IK   GG   G+ + K+       +     ++++    D 
Sbjct: 204 LLQSTEEAIKLAHEIGFPVMIKATAGGGGRGMRLSKEPDEFVKLLQQAKSEAAAAFGNDG 263

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+Y+ +   +    + D   +V               K             +  ++ 
Sbjct: 264 VYLEKYIQNPRHIEFQALADKYGNVVHFGERDCSIQRRNQKLL----EEAPSPALTPELR 319

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K +   A  A  +IG  G+   +FL D      +++E+N 
Sbjct: 320 KAMGDAAVAAAASIGYIGVGTVEFLLDER-GSFYFMEMNT 358


>gi|229157524|ref|ZP_04285601.1| Pyruvate carboxylase [Bacillus cereus ATCC 4342]
 gi|228625974|gb|EEK82724.1| Pyruvate carboxylase [Bacillus cereus ATCC 4342]
          Length = 1148

 Score = 78.6 bits (193), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 31/243 (12%), Positives = 83/243 (34%), Gaps = 21/243 (8%)

Query: 35  QIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSM 91
            ID    +  ++   K +   + +H  +G   E+       E   I +         +  
Sbjct: 62  PIDAYLDIEGIIEIAKSNHV-DAIHPGYGFLSENIQFAKRCEEEGIIFIGPKSKHLDMFG 120

Query: 92  DKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147
           DK++++       +PV P     +       +       P +IK   GG   G+ +++  
Sbjct: 121 DKVKARTQAQLAQIPVIPGSDGPVDSLEEVKEFAEKYDYPIIIKASLGGGGRGMRIVRNS 180

Query: 148 QSIPL----DLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSY 202
           + +         ++ +    D++ +E++V+    +   ++ D   +V  +          
Sbjct: 181 EELRESYNRAKSEAKAAFGNDEVYVEKFVEKPKHIEVQILADEEGNVVHLYE-----RDC 235

Query: 203 ELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
            ++        + P   +  D+ + +   A    + +        +FL        +++E
Sbjct: 236 SVQRRHQKVVEIAPSVSLSDDLRQRICDAAVKLTKNVNYLNAGTVEFLV--KDDNFYFIE 293

Query: 262 INV 264
           +N 
Sbjct: 294 VNP 296


>gi|197295121|ref|YP_002153662.1| urea amidolyase urea carboxylase subunit [Burkholderia cenocepacia
           J2315]
 gi|195944600|emb|CAR57204.1| urea amidolyase, urea carboxylase subunit [Burkholderia cenocepacia
           J2315]
          Length = 1206

 Score = 78.6 bits (193), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 26/198 (13%), Positives = 67/198 (33%), Gaps = 14/198 (7%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF---TMDSQHLISPPYVIKP 132
            + +             K  ++++ ++ GV + P   +       +     I  P ++K 
Sbjct: 100 GLRFIGPRGDHMRAFGLKHTARELAAAHGVALLPGTGLLDDVATALAEADAIGYPVMLKS 159

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQ-----SSSWNHGDQLLIEQYVD-GIELTCGVMGDAS 186
             GG  +G+ + +    +           ++++ H   + +E++V+    +   + GD  
Sbjct: 160 TAGGGGIGMSLCRDAAQLGAAFESVARLGAANFAHAG-VYLEKFVEHARHIEVQIFGDGR 218

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRS 246
                +            K             +       +   A    +A+G       
Sbjct: 219 GGALALGERDCSVQRRNQK----VIEETPAPDLTDAERDALHASAVRLARAVGYASAGTV 274

Query: 247 DFLFDPLSRKVFWLEINV 264
           +F+FD  +R+ ++LE+N 
Sbjct: 275 EFVFDASTRQFYFLEVNT 292


>gi|49483366|ref|YP_040590.1| carbamoyl phosphate synthase large subunit [Staphylococcus aureus
           subsp. aureus MRSA252]
 gi|282903756|ref|ZP_06311644.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus
           subsp. aureus C160]
 gi|282905520|ref|ZP_06313375.1| carbamoyl-phosphate synthase large subunit [Staphylococcus aureus
           subsp. aureus Btn1260]
 gi|282908496|ref|ZP_06316326.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus
           subsp. aureus WW2703/97]
 gi|283957944|ref|ZP_06375395.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus
           subsp. aureus A017934/97]
 gi|295427688|ref|ZP_06820320.1| carbamoyl-phosphate synthase [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|297591353|ref|ZP_06949991.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus
           subsp. aureus MN8]
 gi|60389633|sp|Q6GHN2|CARB_STAAR RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|49241495|emb|CAG40181.1| putative carbamoyl-phosphate synthase, pyrimidine-specific, large
           chain [Staphylococcus aureus subsp. aureus MRSA252]
 gi|282327558|gb|EFB57841.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus
           subsp. aureus WW2703/97]
 gi|282330812|gb|EFB60326.1| carbamoyl-phosphate synthase large subunit [Staphylococcus aureus
           subsp. aureus Btn1260]
 gi|282595374|gb|EFC00338.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus
           subsp. aureus C160]
 gi|283790093|gb|EFC28910.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus
           subsp. aureus A017934/97]
 gi|295128046|gb|EFG57680.1| carbamoyl-phosphate synthase [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|297576239|gb|EFH94955.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus
           subsp. aureus MN8]
 gi|315194089|gb|EFU24482.1| carbamoyl phosphate synthase large subunit [Staphylococcus aureus
           subsp. aureus CGS00]
          Length = 1057

 Score = 78.6 bits (193), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 52/315 (16%), Positives = 120/315 (38%), Gaps = 39/315 (12%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQID---------------------VDRSVGLV 45
           G ++E + +   G     AL++ G++V  ++                         +  +
Sbjct: 21  GQAAEFDYA---GTQACLALKEEGYRVILVNSNPATIMTDKEIADKVYIEPLTHNFIARI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   +PD     L G  G +  +Q     +L+   +    + + +   + D+   + +++
Sbjct: 78  IRKEQPDALLPTLGGQTGLNMAIQLHESGVLQDNNVQLLGTELTSIQQAEDREMFRTLMN 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
              VPV  S +VN        +  +  P +++P       G  +   D+ +   +     
Sbjct: 138 DLNVPVPESDIVNTVEQAFKFKEQVGYPLIVRPAFTMGGTGGGICHNDEELHEIVSNGLH 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
           ++   Q L+E+ + G  E+   VM D + +   I V   +     +   + +S  V P++
Sbjct: 198 YSPATQCLLEKSIAGFKEIEYEVMRDKNDNA--IVVCNMENID-PVGIHTGDSIVVAPSQ 254

Query: 219 -IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
            +    Y+ ++ ++    +A+G  G        DP S   + +E+N  P ++  S     
Sbjct: 255 TLSDVEYQMLRDVSLKVIRALGIEGGCNVQLALDPHSFDYYIIEVN--PRVSRSS--ALA 310

Query: 278 AAYAGYSFRELLLWM 292
           +   GY   +L   +
Sbjct: 311 SKATGYPIAKLAAKI 325



 Score = 72.8 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 26/210 (12%), Positives = 71/210 (33%), Gaps = 14/210 (6%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPL 133
            +    + +     + D+   + ++    VP             + +   I  P V++P 
Sbjct: 650 GVKILGTSLENLNRAEDRKEFEALLRKINVPQPQGKTATSPEEALANAAEIGYPVVVRPS 709

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
                  + ++  D+ +   + Q+   +    +L+++Y+ G E+    + D    +    
Sbjct: 710 YVLGGRAMEIVDNDKELENYMTQAVKASPEHPVLVDRYLTGKEIEVDAICDGETVIIPGI 769

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
           +   +           +S  V P + +  D    ++       + +   G+    F+   
Sbjct: 770 MEHIERAGVHS----GDSIAVYPPQTLTEDELATLEDYTIKLAKGLNIIGLINIQFVIAH 825

Query: 253 LSRKVFWLEIN-----VQPGMTPVSIFPEM 277
               V+ LE+N       P ++ ++  P  
Sbjct: 826 DG--VYVLEVNPRSSRTVPFLSKITDIPMA 853


>gi|37520527|ref|NP_923904.1| urea amidolyase [Gloeobacter violaceus PCC 7421]
 gi|35211521|dbj|BAC88899.1| gll0958 [Gloeobacter violaceus PCC 7421]
          Length = 1202

 Score = 78.6 bits (193), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 48/259 (18%), Positives = 92/259 (35%), Gaps = 30/259 (11%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--I 111
            +H  +G   E+       E   I +     L       K  ++ + +  GVP+ P   +
Sbjct: 77  AIHPGYGFLSENAEFAEACERENIVFIGPTPLQMGRFGRKHTARALAAENGVPLLPGTGL 136

Query: 112 LVNRFTMDSQHL-ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN----HGDQL 166
           L++      Q   I  P ++K   GG  +G+ + + +  +          +        +
Sbjct: 137 LIDLAEAHRQAAAIGYPVMLKSTAGGGGIGLALCRGEAKLTESFQAVQRLSENNFRDGGV 196

Query: 167 LIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
            +E+YV+    L   + GD    V  +            K             I   + +
Sbjct: 197 YLEKYVERARHLEVQIFGDGEGRVIALGERDCSIQRRNQKLL----EETPAPGICETLRE 252

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYA 281
            +   A    +A+G R     +F++D  +   ++LE+N +     G+T         A A
Sbjct: 253 RLCEAAVCLGRAVGYRSAGTVEFIYDAEAADFYFLEVNTRLQVEHGVTE--------AVA 304

Query: 282 GYSFRELLLWMVEDASCLR 300
           G    +L+ WMV  A+  R
Sbjct: 305 GI---DLVEWMVRLAAGER 320


>gi|257898605|ref|ZP_05678258.1| carbamoyl-phosphate synthase [Enterococcus faecium Com15]
 gi|257836517|gb|EEV61591.1| carbamoyl-phosphate synthase [Enterococcus faecium Com15]
          Length = 1061

 Score = 78.6 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 54/296 (18%), Positives = 110/296 (37%), Gaps = 34/296 (11%)

Query: 25  ALEDAGFKVSQID-------VDRSVGLV--------------LAHLKPDLAFNVLHGNFG 63
           AL++ G++V  ++        D+ V                 L   +PD     L G  G
Sbjct: 36  ALKEEGYEVVLVNSNPATIMTDKEVADQVYIEPITLEFVSRILRKERPDALLPTLGGQTG 95

Query: 64  EDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFT 117
            +  ++     ILE L I    + + A   + D+   KQ++     P+  S +VN     
Sbjct: 96  LNMAMELAASGILEELNIELLGTKLSAIDQAEDRDLFKQLMKELNQPIPESEIVNTVEEA 155

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IE 176
           +   + I  P +++P       G  + + ++ +        S +   Q LIE+ + G  E
Sbjct: 156 VAFANKIGYPVIVRPAFTLGGTGGGMCENEEELRTVSENGLSLSPATQCLIERSIAGFKE 215

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +   VM D++ +   I V   + +     ++  +        +    Y+ ++  +    +
Sbjct: 216 IEYEVMRDSADNA--IVVCNMENFDPVGIHTGDSIVFAPSQTLSDHEYQMLRDASLSIIR 273

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           A+   G        DP S   + +E+N  P ++  S     +   GY   +L   +
Sbjct: 274 ALKIEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAKI 325



 Score = 70.2 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 27/225 (12%), Positives = 76/225 (33%), Gaps = 13/225 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC--PSILVNRFTMDSQHLISPPYV 129
           L    +    + I     + ++   +Q +   G+P     +       +     I  P +
Sbjct: 646 LTAAGVKILGTTIEDLDRAENRDLFEQALKELGIPQPLGDTATSKEEAVVIASRIGYPVL 705

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           ++P        + +++  + +   +  +   +    +L+++Y+ G E     + D    +
Sbjct: 706 VRPSYVLGGRAMEIVENQRDLEDYMEHAVKASPEHPVLVDRYLLGGECEVDAICDGETVL 765

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               +   +           +S  V P + +   I K ++         + C G+    F
Sbjct: 766 IPGIMEHIERAGVHS----GDSMAVYPPQTLSESIKKTIEDYTIRLALGLNCVGMMNIQF 821

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +      +V+ +E+N +   T     P ++   G    ++    +
Sbjct: 822 VIHE--NEVYVIEVNPRASRT----VPFLSKVTGIPMAQIATKAI 860


>gi|89055272|ref|YP_510723.1| pyruvate carboxylase [Jannaschia sp. CCS1]
 gi|88864821|gb|ABD55698.1| pyruvate carboxylase [Jannaschia sp. CCS1]
          Length = 1146

 Score = 78.6 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 33/199 (16%), Positives = 74/199 (37%), Gaps = 15/199 (7%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIK 131
            I +            DK  +++V    GVPV P+  V    MD+       +  P ++K
Sbjct: 102 GITFIGPKAETMRALGDKASARRVAVEAGVPVIPATEVLGDDMDAIKAEAKEVGYPLMLK 161

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQ-----SSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186
              GG   G+  I  +  +   +L+      +++ +G+  L +  +    +   ++GD+ 
Sbjct: 162 ASWGGGGRGMRPIASEDELEEKVLEGRREAEAAFGNGEGYLEKMILRARHVEVQILGDSH 221

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISR 245
            ++  +           ++  +       PA  +      E+  L     + +       
Sbjct: 222 GNIYHLYE-----RDCSVQRRNQKVVERAPAPYLTDMQRNEICLLGKKICEHVNYECAGT 276

Query: 246 SDFLFDPLSRKVFWLEINV 264
            +FL D  S + +++E+N 
Sbjct: 277 VEFLMDMDSGQFYFIEVNP 295


>gi|330821638|ref|YP_004350500.1| urea amidolyase urea carboxylase subunit [Burkholderia gladioli
           BSR3]
 gi|327373633|gb|AEA64988.1| urea amidolyase urea carboxylase subunit [Burkholderia gladioli
           BSR3]
          Length = 1206

 Score = 78.6 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 31/220 (14%), Positives = 76/220 (34%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+       E   + +             K  ++++    GVP+ P    
Sbjct: 78  AIHPGYGFLSENPAFAEACEAAGLRFIGPRAAQMRAFGLKHSAREIAREQGVPLLPGTGL 137

Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD----QL 166
                  +++   I  P ++K   GG  +G+ + +    +       +     +     +
Sbjct: 138 LADAAAALEAAGRIGYPVMLKSTAGGGGIGMSLCRDAGQLAAAFETVARLGAANFANAGV 197

Query: 167 LIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIY 224
            +E+YV+    +   + GD   +V  +           ++  +       PA  +     
Sbjct: 198 FVEKYVEAARHIEVQIFGDGRGEVIALGE-----RDCSVQRRNQKVIEETPAPGLTDAER 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +   A    +A+        +++FD  +R+ ++LE+N 
Sbjct: 253 AGLHAGAVRLAKAVDYASAGTVEYVFDAEARRFYFLEVNT 292


>gi|222529369|ref|YP_002573251.1| carbamoyl phosphate synthase large subunit [Caldicellulosiruptor
           bescii DSM 6725]
 gi|222456216|gb|ACM60478.1| carbamoyl-phosphate synthase, large subunit [Caldicellulosiruptor
           bescii DSM 6725]
          Length = 1075

 Score = 78.6 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 54/289 (18%), Positives = 103/289 (35%), Gaps = 39/289 (13%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQID-------VDRS--------------VGLV 45
           G ++E + S   G     AL++ G +V  I+        D++              +  +
Sbjct: 21  GQAAEFDYS---GSQACKALKEEGIEVVLINSNPATIMTDKTMADSIYIEPITCEIIEKI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   K D     L G  G +  V+     IL+   +    + I A   + D+   KQ++ 
Sbjct: 78  IQKEKVDSILPTLGGQTGLNTAVELYKSGILDKYNVKVIGTNIEAIEFAEDRQLFKQLMI 137

Query: 102 SCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G PV PS +VN     +     I  P +I+P       G  +   +        +  S
Sbjct: 138 KIGEPVVPSEVVNCVEDGLAFAKKIGFPVIIRPAYTLGGTGGGIANNEDEFVEIARRGLS 197

Query: 160 WNHGDQLLIEQYVDG---IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216
           ++   Q+L+E+ + G   IE       +  L              +     + +S  V P
Sbjct: 198 YSPVHQILVEKSIKGWKEIEYEVMRDSNGCLITVCNMENIDPVGIH-----TGDSIVVAP 252

Query: 217 AK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           ++ +    Y+ ++  A      +   G     F  +P S +   +E+N 
Sbjct: 253 SQTLSDKEYQMLRSSALKIIDTLKIEGGCNVQFALNPDSFEYAVIEVNP 301



 Score = 77.9 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 53/306 (17%), Positives = 111/306 (36%), Gaps = 39/306 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLV 68
           S  +   AL   G K   I         D D S  L    L  +   NV+     E  +V
Sbjct: 578 SVHSVY-ALSKLGIKSVIINNNPETVSTDFDTSDMLFFEPLTKEDVLNVIETVKPEGIIV 636

Query: 69  Q----------AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI--LVNRF 116
           Q            L    I    +      ++ D+ R  ++++   +   P       + 
Sbjct: 637 QFGGQTAIKLSQQLAKEGIKIFGTSAEGIDIAEDRERFDKILNKLNIKRPPGFTCYTLQE 696

Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
            +   + +  P +++P       G+ +   D  I   L  + + N    +LI++Y+ G E
Sbjct: 697 ALRIANSLGYPVLVRPSYVLGGQGMKIAFDDNDIVEMLSYAKNLN-DHPILIDKYIVGKE 755

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAH 235
           +    + D      +I +P    +       S +S  + PA+ I   I +++        
Sbjct: 756 IEVDAISDGE----DILIPGIMEHIERAGVHSGDSISLYPARNISKYIEEKIVEYTLKIA 811

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEMAAYA----GYSFR 286
           + + C+G+    F+    + +++ +E+N       P ++ V+  P +        GY  +
Sbjct: 812 KELECKGLINVQFIV--QNEELYVIEVNPRGSRTVPFLSKVTGVPMVELATMVSLGYRLK 869

Query: 287 ELLLWM 292
           +L+  +
Sbjct: 870 DLVNKV 875


>gi|170704628|ref|ZP_02895094.1| putative acetyl-CoA carboxylase, biotin carboxylase [Bacillus
           anthracis str. A0389]
 gi|170130429|gb|EDS99290.1| putative acetyl-CoA carboxylase, biotin carboxylase [Bacillus
           anthracis str. A0389]
          Length = 445

 Score = 78.6 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 80/220 (36%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       +   I +             K+ S+  + +  VPV P I  
Sbjct: 77  AIHPGYGLLSENPSFPVRCKEEGIVFIGPSEEIITKMGSKIESRIAMQAADVPVVPGITT 136

Query: 114 N----RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
           N       ++    I  P ++K   GG  +G+ +++ +Q++         ++ ++    +
Sbjct: 137 NIETAEEAIEIAKQIGYPLMLKASAGGGGIGMQLMETEQALTKAFESNKTRAQNFFGNGE 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+Y+ D   +   ++ D   +   +   +        K             +     
Sbjct: 197 MYLERYIADAHHIEIQLLADTHGNTVYLWERECSVQRRNQK----VIEEAPSPFLDEGTR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K +  +A  A +A+G       +FL D      ++LE+N 
Sbjct: 253 KAMGEIAVQAAKALGYTNAGTVEFLVDEQKN-FYFLEMNT 291


>gi|116511587|ref|YP_808803.1| acetyl-CoA carboxylase biotin carboxylase subunit [Lactococcus
           lactis subsp. cremoris SK11]
 gi|116107241|gb|ABJ72381.1| acetyl-CoA carboxylase carboxyltransferase subunit alpha
           [Lactococcus lactis subsp. cremoris SK11]
          Length = 455

 Score = 78.6 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 74/220 (33%), Gaps = 16/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  FG   E+     + E + I +         +  DK+ ++  +   GVPV P    
Sbjct: 77  AIHPGFGFLSENSKFARLCEEMNIKFIGPSAKVMDMMGDKINARAEMIKAGVPVTPGSEG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
            +      +     I  P ++K   GG   GI  +   + +      + +          
Sbjct: 137 EVHTTDEAVKIAEEIGYPIILKASAGGGGKGIRKVNTVEELVPAFEAAQAEAQAAFGNGA 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+ +     +   ++GD+  +V  +            K             I   + 
Sbjct: 197 MFIERMIFPARHIEVQILGDSHGNVIHLGERDCSLQRNNQKVL----EESPSVAIGHTLR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            E+   A  A Q +        +FL D  S K +++E+N 
Sbjct: 253 NEITSAAVKAAQHVSYENAGTIEFLLDESSGKFYFMEMNT 292


>gi|47565822|ref|ZP_00236861.1| pyruvate carboxylase [Bacillus cereus G9241]
 gi|47557102|gb|EAL15431.1| pyruvate carboxylase [Bacillus cereus G9241]
          Length = 1148

 Score = 78.6 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 31/243 (12%), Positives = 83/243 (34%), Gaps = 21/243 (8%)

Query: 35  QIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSM 91
            ID    +  ++   K +   + +H  +G   E+       E   I +         +  
Sbjct: 62  PIDAYLDIEGIIEIAKSNHV-DAIHPGYGFLSENIQFAKRCEEEGIIFIGPKSKHLDMFG 120

Query: 92  DKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147
           DK++++       +PV P     +       +       P +IK   GG   G+ +++  
Sbjct: 121 DKVKARTQAQLAQIPVIPGSDGPVDSLEEVKEFAEKYDYPIIIKASLGGGGRGMRIVRNS 180

Query: 148 QSIPL----DLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSY 202
           + +         ++ +    D++ +E++V+    +   ++ D   +V  +          
Sbjct: 181 EELRESYNRAKSEAKAAFGNDEVYVEKFVEKPKHIEVQILADEEGNVVHLYE-----RDC 235

Query: 203 ELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
            ++        + P   +  D+ + +   A    + +        +FL        +++E
Sbjct: 236 SVQRRHQKVVEIAPSVSLSDDLRQRICDAAVKLTKNVNYLNAGTVEFLV--KDDNFYFIE 293

Query: 262 INV 264
           +N 
Sbjct: 294 VNP 296


>gi|52842870|ref|YP_096669.1| pyruvate carboxylase subunit A [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|52629981|gb|AAU28722.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Legionella
           pneumophila subsp. pneumophila str. Philadelphia 1]
          Length = 471

 Score = 78.6 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 35/228 (15%), Positives = 74/228 (32%), Gaps = 22/228 (9%)

Query: 47  AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP 106
             + P   F   +  F ED           I +        A    K+ +++ +   GVP
Sbjct: 75  EAIHPGYGFLSENAEFAED------CNKAGIVFIGPSAPVIATMGSKIAAREAMIKAGVP 128

Query: 107 VCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSS 158
             P    N  T+D        +  P ++K   GG   GI +      I         ++ 
Sbjct: 129 TIPGSKGNLETIDDALHCAETLGYPVMLKATFGGGGRGIRLCHDASQIKQQFARVQSEAE 188

Query: 159 SWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP- 216
                  + +E+Y+ +   +   ++ D    V  +            K        + P 
Sbjct: 189 KSFGDSHIYMEKYIANPRHIEVQILADHHGTVLHLFERDCSIQRRHQKL-----VEIAPS 243

Query: 217 AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            ++     + +   A  A + +G       +F+ D  + + +++E+N 
Sbjct: 244 PQLDEATRQVLLGYAVKAAKEVGYTNAGTVEFILDK-NNRPYFMEMNT 290


>gi|332006575|gb|AED93958.1| biotin carboxylase [Arabidopsis thaliana]
          Length = 555

 Score = 78.6 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 80/220 (36%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
           +LH  +G   E+ L   +     I +      +  +  DK  +++ + + GVP  P    
Sbjct: 149 MLHPGYGFLSENALFVEMCRDHGINFIGPNPDSIRVMGDKATARETMKNAGVPTVPGSDG 208

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS----IPLDLLQSSSWNHGDQ 165
            +      +   + I  P +IK   GG   G+ + K+       +     ++++    D 
Sbjct: 209 LLQSTEEAVRVANEIGFPVMIKATAGGGGRGMRLAKEPGEFVKLLQQAKSEAAAAFGNDG 268

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             +E++V +   +   V+ D   +V               K             +  ++ 
Sbjct: 269 CYLEKFVQNPRHIEFQVLADKFGNVVHFGERDCSIQRRNQKLL----EEAPSPALTAELR 324

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K +   A  A  +IG  G+   +FL D      +++E+N 
Sbjct: 325 KAMGDAAVAAAASIGYIGVGTVEFLLDER-GSFYFMEMNT 363


>gi|309810739|ref|ZP_07704546.1| pyruvate carboxylase [Dermacoccus sp. Ellin185]
 gi|308435276|gb|EFP59101.1| pyruvate carboxylase [Dermacoccus sp. Ellin185]
          Length = 1126

 Score = 78.6 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 43/247 (17%), Positives = 86/247 (34%), Gaps = 18/247 (7%)

Query: 28  DAGFKVS-QIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           + G  V   +DVD  +  V      D  +   +G   E+ L+        I +       
Sbjct: 53  EVGHPVRAYLDVDE-IIRVARESGADAIYPG-YGFLSENPLLAEACADAGITFIGPKPAV 110

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD---SQHLISPPYVIKPLKGGSSLGIIV 143
             ++ +K  +       G+P   S+  +    +       I  P  +K + GG   G+  
Sbjct: 111 LHMTGNKATAIAAAKRAGLPTLRSVPPSSDIDELVKGADDIGYPVFVKAVAGGGGRGMRR 170

Query: 144 IKKDQSIPLDLLQS-----SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD 198
           ++K +++  +L  +     S++      + E  VD   +   ++ D   DV         
Sbjct: 171 VEKPEALRENLEAAMREAESAFGDATCFIEEAVVDPRHIEVQILADGEGDVV-----HLF 225

Query: 199 FYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
                ++        + PA  +  ++ + +   A    + IG       +FL D   R V
Sbjct: 226 ERDCSVQRRHQKVVEIAPAPNLSPELRERMCADAVAFAKEIGYSCAGTVEFLLDTRGRYV 285

Query: 258 FWLEINV 264
           F  E+N 
Sbjct: 286 FI-EMNP 291


>gi|227551410|ref|ZP_03981459.1| carbamoyl-phosphate synthase (glutamine-hydrolyzing) [Enterococcus
           faecium TX1330]
 gi|227179419|gb|EEI60391.1| carbamoyl-phosphate synthase (glutamine-hydrolyzing) [Enterococcus
           faecium TX1330]
          Length = 1069

 Score = 78.6 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 54/296 (18%), Positives = 111/296 (37%), Gaps = 34/296 (11%)

Query: 25  ALEDAGFKVSQID-------VDRSVGLV--------------LAHLKPDLAFNVLHGNFG 63
           AL++ G++V  ++        D+ V                 L   +PD     L G  G
Sbjct: 44  ALKEEGYEVVLVNSNPATIMTDKEVADQVYIEPITLEFVSRILRKERPDALLPTLGGQTG 103

Query: 64  EDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFT 117
            +  ++     ILE L I    + + A   + D+   KQ++     P+  S +VN     
Sbjct: 104 LNMAMELAASGILEELNIELLGTKLSAIDQAEDRDLFKQLMKELNQPIPESEIVNTVEEA 163

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IE 176
           +   + I  P +++P       G  + + ++ + +      S +   Q LIE+ + G  E
Sbjct: 164 VAFANKIGYPVIVRPAFTLGGTGGGMCENEEELRIVSENGLSLSPATQCLIERSIAGFKE 223

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +   VM D++ +   I V   + +     ++  +        +    Y+ ++  +    +
Sbjct: 224 IEYEVMRDSADNA--IVVCNMENFDPVGIHTGDSIVFAPSQTLSDHEYQMLRDASLSIIR 281

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           A+   G        DP S   + +E+N  P ++  S     +   GY   +L   +
Sbjct: 282 ALKIEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAKI 333



 Score = 67.5 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 26/225 (11%), Positives = 75/225 (33%), Gaps = 13/225 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC--PSILVNRFTMDSQHLISPPYV 129
           L    +    + I     + ++   +Q +    +P     +       +     I  P +
Sbjct: 654 LTTAGVKILGTTIEDLDRAENRDLFEQALKELDIPQPLGDTATSKEEAVVIASRIGYPVL 713

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           ++P        + +++  + +   +  +   +    +L+++Y+ G E     + D    +
Sbjct: 714 VRPSYVLGGRAMEIVENQRDLEDYMEHAVKASPEHPVLVDRYLLGGECEVDAICDGETVL 773

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               +   +           +S  V P + +   I K ++         + C G+    F
Sbjct: 774 IPGIMEHIERAGVHS----GDSMAVYPPQTLSESIKKTIEDYTIRLALGLNCVGMMNIQF 829

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +      +V+ +E+N +   T     P ++   G    ++    +
Sbjct: 830 VIHE--NEVYVIEVNPRASRT----VPFLSKVTGIPMAQIATKAI 868


>gi|257887481|ref|ZP_05667134.1| carbamoyl-phosphate synthase [Enterococcus faecium 1,141,733]
 gi|257895976|ref|ZP_05675629.1| carbamoyl-phosphate synthase [Enterococcus faecium Com12]
 gi|293377434|ref|ZP_06623636.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecium
           PC4.1]
 gi|257823535|gb|EEV50467.1| carbamoyl-phosphate synthase [Enterococcus faecium 1,141,733]
 gi|257832541|gb|EEV58962.1| carbamoyl-phosphate synthase [Enterococcus faecium Com12]
 gi|292643952|gb|EFF62060.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecium
           PC4.1]
          Length = 1061

 Score = 78.6 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 54/296 (18%), Positives = 111/296 (37%), Gaps = 34/296 (11%)

Query: 25  ALEDAGFKVSQID-------VDRSVGLV--------------LAHLKPDLAFNVLHGNFG 63
           AL++ G++V  ++        D+ V                 L   +PD     L G  G
Sbjct: 36  ALKEEGYEVVLVNSNPATIMTDKEVADQVYIEPITLEFVSRILRKERPDALLPTLGGQTG 95

Query: 64  EDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFT 117
            +  ++     ILE L I    + + A   + D+   KQ++     P+  S +VN     
Sbjct: 96  LNMAMELAASGILEELNIELLGTKLSAIDQAEDRDLFKQLMKELNQPIPESEIVNTVEEA 155

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IE 176
           +   + I  P +++P       G  + + ++ + +      S +   Q LIE+ + G  E
Sbjct: 156 VAFANKIGYPVIVRPAFTLGGTGGGMCENEEELRIVSENGLSLSPATQCLIERSIAGFKE 215

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +   VM D++ +   I V   + +     ++  +        +    Y+ ++  +    +
Sbjct: 216 IEYEVMRDSADNA--IVVCNMENFDPVGIHTGDSIVFAPSQTLSDHEYQMLRDASLSIIR 273

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           A+   G        DP S   + +E+N  P ++  S     +   GY   +L   +
Sbjct: 274 ALKIEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAKI 325



 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 26/225 (11%), Positives = 75/225 (33%), Gaps = 13/225 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC--PSILVNRFTMDSQHLISPPYV 129
           L    +    + I     + ++   +Q +    +P     +       +     I  P +
Sbjct: 646 LTTAGVKILGTTIEDLDRAENRDLFEQALKELDIPQPLGDTATSKEEAVVIASRIGYPVL 705

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           ++P        + +++  + +   +  +   +    +L+++Y+ G E     + D    +
Sbjct: 706 VRPSYVLGGRAMEIVENQRDLEDYMEHAVKASPEHPVLVDRYLLGGECEVDAICDGETVL 765

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               +   +           +S  V P + +   I K ++         + C G+    F
Sbjct: 766 IPGIMEHIERAGVHS----GDSMAVYPPQTLSESIKKTIEDYTIRLALGLNCVGMMNIQF 821

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +      +V+ +E+N +   T     P ++   G    ++    +
Sbjct: 822 VIHE--NEVYVIEVNPRASRT----VPFLSKVTGIPMAQIATKAI 860


>gi|229104509|ref|ZP_04235176.1| Pyruvate carboxylase [Bacillus cereus Rock3-28]
 gi|228678951|gb|EEL33161.1| Pyruvate carboxylase [Bacillus cereus Rock3-28]
          Length = 1148

 Score = 78.6 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 32/243 (13%), Positives = 83/243 (34%), Gaps = 21/243 (8%)

Query: 35  QIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSM 91
            ID    +  ++   K +   + +H  +G   E+       E   I +         +  
Sbjct: 62  PIDAYLDIEGIIEIAKSNHV-DAIHPGYGFLSENIQFAKRCEEEGIIFIGPKSEHLDMFG 120

Query: 92  DKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147
           DK++++       +PV P     I       +       P +IK   GG   G+ +++  
Sbjct: 121 DKVKARTQAQLAQIPVIPGSDGPIDSIEEVEEFAEKYDYPIIIKASLGGGGRGMRIVRAS 180

Query: 148 QSIPL----DLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSY 202
           + +         ++ +    D++ +E++V+    +   ++ D   +V             
Sbjct: 181 EELRESYNRAKSEAKAAFGNDEVYVEKFVEKPKHIEVQILADEEGNVV-----HLFERDC 235

Query: 203 ELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
            ++        + P   +  D+ + +   A    + +        +FL      + +++E
Sbjct: 236 SVQRRHQKVVEIAPSVSLSDDLRRRICEAAVKLTKNVNYLNAGTVEFLV--KGDEFYFIE 293

Query: 262 INV 264
           +N 
Sbjct: 294 VNP 296


>gi|189465917|ref|ZP_03014702.1| hypothetical protein BACINT_02280 [Bacteroides intestinalis DSM
           17393]
 gi|189434181|gb|EDV03166.1| hypothetical protein BACINT_02280 [Bacteroides intestinalis DSM
           17393]
          Length = 388

 Score = 78.6 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 49/253 (19%), Positives = 86/253 (33%), Gaps = 37/253 (14%)

Query: 33  VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
            S +D D ++  V+   +PD+    +     E         L         ++ SA +++
Sbjct: 48  FSMLDGD-ALERVVRKHQPDIIVPEIEAIRTE--------RLYGFEKEGIQVVPSARAVN 98

Query: 93  -----KMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVIK 145
                K          G+          F     +   I  P V+KPL   S  G  ++K
Sbjct: 99  FTMNRKAIRDLAAQELGLKTAKYFYAKSFDELKAASEKIGFPCVVKPLMSSSGKGQSLVK 158

Query: 146 KDQSIPLDLLQSSSWNHGD--QLLIEQYVDGIE----LTCGVMGDASLDVTEIA-VPKSD 198
               +        + + GD  +L+IE+++        LT       +L    I  V K  
Sbjct: 159 SADELEHAWEYGCNGSRGDIKELIIEEFIKFDSEITLLTVTQKNGPTLFCPPIGHVQKGG 218

Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
            Y               PA I     KE Q +A    +A+   G+   +F     +  V+
Sbjct: 219 DY----------RESFQPAHIDPAHLKEAQEMAEKVTRALTGAGLWGVEFFLSHENG-VY 267

Query: 259 WLEINVQP---GM 268
           + E++ +P   GM
Sbjct: 268 FSELSPRPHDTGM 280


>gi|164511458|emb|CAN89659.1| putative pyridoxal-phosphate dependent enzyme [Streptomyces
           collinus]
          Length = 757

 Score = 78.6 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 41/238 (17%), Positives = 82/238 (34%), Gaps = 25/238 (10%)

Query: 71  ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI--SPPY 128
           +   L +P   +   A     DK   + ++   GV      +V      +  +     P 
Sbjct: 434 LARWLGLP--GNPPEAVTACRDKSALRALLRRAGVHQPRYAVVREPGEVAAAVARTGLPC 491

Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ-------LLIEQYVDGIELTCGV 181
           V+KP     S+ +++   +        +  +     +       +L+E+Y+DG E +  +
Sbjct: 492 VVKPADDSGSVNVLLCTDEAQARAQAERILAVTTNVRGMPTARTVLVEEYLDGPEYSVEM 551

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241
                  V      KS           +   H+ PA +P    + +      A  A G R
Sbjct: 552 FSQDGEAVCVGITAKSVTGDPH----FVEHRHLFPAPLPAATAERITETVMAALDAAGIR 607

Query: 242 -GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA-YAGYSFRELLLWMVEDAS 297
            G + ++            +EIN +P      + PE+    +G    +LL   ++ A+
Sbjct: 608 LGATHTEVKLTGSG--PAVIEINPRP---AGGMIPELVRLASGV---DLLEQQLKAAT 657


>gi|84516408|ref|ZP_01003767.1| pyruvate carboxylase [Loktanella vestfoldensis SKA53]
 gi|84509444|gb|EAQ05902.1| pyruvate carboxylase [Loktanella vestfoldensis SKA53]
          Length = 1147

 Score = 78.6 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 76/221 (34%), Gaps = 18/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+           I +            DK  +++V    GVPV P+  V
Sbjct: 80  AIHPGYGLLSENPDFVDACTSHGITFIGPKAQTMRQLGDKASARRVAIEAGVPVIPATEV 139

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-----SSSWNHGD 164
               MD        +  P ++K   GG   G+  I  ++ +   + +      +++ +G+
Sbjct: 140 LGDDMDLIRKQAAEVGYPLMLKASWGGGGRGMRPIMNEKELEEKVREGRREAEAAFGNGE 199

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
             L +  +    +   ++GD+   +  +           ++  +       PA  +    
Sbjct: 200 GYLEKMIMRARHVEVQILGDSHGQIYHLWE-----RDCSVQRRNQKVVERAPAPYLSEVQ 254

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +  L       +        +FL D  S   F++E+N 
Sbjct: 255 REHICNLGKKICAHVNYECAGTVEFLMDMDSGDFFFIEVNP 295


>gi|256848588|ref|ZP_05554029.1| phosphoribosylglycinamide formyltransferase 2 [Lactobacillus
           coleohominis 101-4-CHN]
 gi|256714640|gb|EEU29620.1| phosphoribosylglycinamide formyltransferase 2 [Lactobacillus
           coleohominis 101-4-CHN]
          Length = 374

 Score = 78.6 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 37/207 (17%), Positives = 89/207 (42%), Gaps = 15/207 (7%)

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQ 121
           E+  ++++ ++ +  Y   G     ++ D++R K  +   G+   P   V+      ++ 
Sbjct: 78  ENVDLRSLEDVADHSYVPQGTNLLYITKDRIREKTFLHQAGLKTAPFQSVHSSQELENAV 137

Query: 122 HLISPPYVIKPLKGG-SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI-ELTC 179
             I  P V+K  +GG    G +V+ +      DL + +        ++E +V    E + 
Sbjct: 138 ANIGYPCVLKTCEGGYDGHGQVVLHR----AADLAKCAEILKTQNCILEGWVPFRMECSV 193

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
            V  +   ++T   V ++        ++ +    ++PA+I  ++ ++ Q++A    +AI 
Sbjct: 194 MVARNERGEITTFPVAENIH------HNEILHISIIPARISPELQRQAQQMAEQIAKAIN 247

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQP 266
            RGI   +        +++  E+  +P
Sbjct: 248 LRGILGVEMFV-GQDDQIYINELAPRP 273


>gi|251780959|ref|ZP_04823879.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Clostridium
           botulinum E1 str. 'BoNT E Beluga']
 gi|243085274|gb|EES51164.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Clostridium
           botulinum E1 str. 'BoNT E Beluga']
          Length = 450

 Score = 78.6 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 41/220 (18%), Positives = 86/220 (39%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  FG   E+     + +   I +      +  L  DK R+++++    VPV P    
Sbjct: 77  AIHPGFGFLSENAKFAKMCKECNIKFIGPDYESIELMGDKARAREIMKKANVPVVPGYEG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGDQ 165
            I      +     I  P +IK   GG   GI + + D+           +S +    D+
Sbjct: 137 EIENETHALGIAKKIGYPIMIKAAAGGGGKGIRIARSDEEFLKGYKTAKSESKACFGDDR 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           L IE++++    +   ++ D   +V  +   +        K      +++    +  +I 
Sbjct: 197 LYIEKFIEKPRHIEFQILADEYGNVVHLGERECSLQRKNQKVLEEAPSNI----LNEEIR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +  +A  A +A+  +     +FLFD  +   +++E+N 
Sbjct: 253 NTMGEIAKKAAKAVNYKNAGTIEFLFDNHNN-FYFMEMNT 291


>gi|293570486|ref|ZP_06681541.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecium
           E980]
 gi|291609432|gb|EFF38699.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecium
           E980]
          Length = 1061

 Score = 78.6 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 54/296 (18%), Positives = 111/296 (37%), Gaps = 34/296 (11%)

Query: 25  ALEDAGFKVSQID-------VDRSVGLV--------------LAHLKPDLAFNVLHGNFG 63
           AL++ G++V  ++        D+ V                 L   +PD     L G  G
Sbjct: 36  ALKEEGYEVVLVNSNPATIMTDKEVADQVYIEPITLEFVSRILRKERPDALLPTLGGQTG 95

Query: 64  EDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFT 117
            +  ++     ILE L I    + + A   + D+   KQ++     P+  S +VN     
Sbjct: 96  LNMAMELAASGILEELNIELLGTKLSAIDQAEDRDLFKQLMKELNQPIPESEIVNTVEEA 155

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IE 176
           +   + I  P +++P       G  + + ++ + +      S +   Q LIE+ + G  E
Sbjct: 156 VAFANKIGYPVIVRPAFTLGGTGGGMCENEEELRIVSENGLSLSPATQCLIERSIAGFKE 215

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +   VM D++ +   I V   + +     ++  +        +    Y+ ++  +    +
Sbjct: 216 IEYEVMRDSADNA--IVVCNMENFDPVGIHTGDSIVFAPSQTLSDHEYQMLRDASLSIIR 273

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           A+   G        DP S   + +E+N  P ++  S     +   GY   +L   +
Sbjct: 274 ALKIEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAKI 325



 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 26/225 (11%), Positives = 75/225 (33%), Gaps = 13/225 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC--PSILVNRFTMDSQHLISPPYV 129
           L    +    + I     + ++   +Q +    +P     +       +     I  P +
Sbjct: 646 LTTAGVKILGTTIEDLDRAENRDLFEQALKELDIPQPLGDTATSKEEAVVIASRIGYPVL 705

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           ++P        + +++  + +   +  +   +    +L+++Y+ G E     + D    +
Sbjct: 706 VRPSYVLGGRAMEIVENQRDLEDYMEHAVKASPEHPVLVDRYLLGGECEVDAICDGETVL 765

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               +   +           +S  V P + +   I K ++         + C G+    F
Sbjct: 766 IPGIMEHIERAGVHS----GDSMAVYPPQTLSESIKKTIEDYTIRLALGLNCVGMMNIQF 821

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +      +V+ +E+N +   T     P ++   G    ++    +
Sbjct: 822 VIHE--NEVYVIEVNPRASRT----VPFLSKVTGIPMAQIATKAI 860


>gi|289642536|ref|ZP_06474679.1| Carbamoyl-phosphate synthase L chain ATP-binding [Frankia symbiont
           of Datisca glomerata]
 gi|289507624|gb|EFD28580.1| Carbamoyl-phosphate synthase L chain ATP-binding [Frankia symbiont
           of Datisca glomerata]
          Length = 662

 Score = 78.6 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 86/224 (38%), Gaps = 22/224 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+           I +      A      K R+K+++   GVPV P +++
Sbjct: 77  AIHPGYGFLSENADFARACADAGITFVGPPPDAIDAMGSKTRAKELMDKAGVPVLPGLVI 136

Query: 114 NRFTM-------DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL-----QSSSWN 161
           +   +        +   ++ P ++K   GG   G+ ++++   +   +       +S++ 
Sbjct: 137 DADLLADGGQLSQAAADLAFPLLVKAAYGGGGRGMRIVRQVDELAEAVAGAQREAASAFG 196

Query: 162 HGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
               + +E YV+    +   +  D   +   +   +    S + +Y  +         + 
Sbjct: 197 -NATVFLEHYVERPRHIEVQIFADQHGNAVHLFERE---CSIQRRYQKI-IEEAPSVAVD 251

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            ++ + +   A  A  AIG  G    +F+ D    + F+LE+N 
Sbjct: 252 DELRERLGSAAVAAANAIGYVGAGTVEFVLDQQ-GQFFFLEVNT 294


>gi|251790330|ref|YP_003005051.1| urea carboxylase [Dickeya zeae Ech1591]
 gi|247538951|gb|ACT07572.1| urea carboxylase [Dickeya zeae Ech1591]
          Length = 1204

 Score = 78.6 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 32/202 (15%), Positives = 68/202 (33%), Gaps = 14/202 (6%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFTMDSQHLISPPY 128
            E   I +             K R++++ +  GVP+ P   +       + +   I  P 
Sbjct: 95  CENAGIVFIGPTAQQIGEFGLKHRARELAAQAGVPMTPGTGLLGSLADALSAAARIGYPV 154

Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQLLIEQYVD-GIELTCGVMG 183
           ++K   GG  +G+     + ++             +     + +E+ VD    +   + G
Sbjct: 155 MLKSTAGGGGIGLTRCADEPALRQAWDSVRRLGEQFFSDAGVFVERCVDHARHIEVQIFG 214

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRG 242
           D   +V  +           L+  +       PA  +P      + R A      +  R 
Sbjct: 215 DGKGNVVALGE-----RDCSLQRRNQKVVEESPAPHLPAATRDALLRAAMQLGALVNYRS 269

Query: 243 ISRSDFLFDPLSRKVFWLEINV 264
               +F++D      ++LE+N 
Sbjct: 270 AGTVEFIYDAGQDAFYFLEVNT 291


>gi|271969513|ref|YP_003343709.1| acetyl-CoA carboxylase biotin carboxylase subunit
           [Streptosporangium roseum DSM 43021]
 gi|270512688|gb|ACZ90966.1| acetyl-CoA carboxylase biotin carboxylase subunit
           [Streptosporangium roseum DSM 43021]
          Length = 443

 Score = 78.6 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 39/216 (18%), Positives = 83/216 (38%), Gaps = 15/216 (6%)

Query: 59  HGNFGED-GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILV 113
           +G F E+ G  +A+++   + +      A     DK+ ++ ++ + GVPV       +  
Sbjct: 82  YGFFSENAGFARAVID-AGLTWIGPSPEAIERMGDKINARNLMEAAGVPVAAGTREPVAD 140

Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS----WNHGDQLLIE 169
               + +   I  P ++K   GG  +G+ V   +  +     Q+S     +     +L+E
Sbjct: 141 LEEAVAAAAGIGYPVMVKTAGGGGGIGMGVAHDEAGLAKAFEQASRAASRFGGTSAILLE 200

Query: 170 QYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           +Y++    +   ++G A   V  +            K             I  ++ + + 
Sbjct: 201 RYIERARHVEVQILGLADGTVVALGERDCSVQRRHQK----VVEETPSPGITQELRERML 256

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             A  A +A+G  G    + L D   +   +LE+N 
Sbjct: 257 AAAVRAGEAVGYLGAGTVECLVDADKQDFVFLEMNT 292


>gi|307153024|ref|YP_003888408.1| carbamoyl-phosphate synthase large subunit [Cyanothece sp. PCC
           7822]
 gi|306983252|gb|ADN15133.1| carbamoyl-phosphate synthase, large subunit [Cyanothece sp. PCC
           7822]
          Length = 1082

 Score = 78.6 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 57/279 (20%), Positives = 104/279 (37%), Gaps = 36/279 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  I         D +              V  VLA  +PD    
Sbjct: 29  SGTQACKALREEGYEVVLINSNPASIMTDPEMANRTYIEPLTPEMVEKVLAKERPDAILP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G    +  V       L+   +    + + A  ++ D++  K+ ++  GVPVCPS  
Sbjct: 89  TMGGQTALNLAVALAKNGALDKYNVELIGAKLPAIEMAEDRLLFKEAMARIGVPVCPSGI 148

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
              +      +  + S P +I+P       G  +    +   +        +   Q+L+E
Sbjct: 149 ASTLEEAKAIAVQIGSYPLIIRPAFTLGGTGGGISYNQEEFEVMAQYGLDCSPVSQILVE 208

Query: 170 QYVDG-IELTCGVMGDASLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPAK-IPLDIYKE 226
           + + G  E    VM D + +V  I   ++ D           +S  V PA+ +    Y+ 
Sbjct: 209 KSLLGWKEYELEVMRDLADNVVIICSIENIDPMGVHT----GDSITVAPAQTLTDKEYQR 264

Query: 227 VQRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           ++  +    + IG   G S   F  +P+   V  +E+N 
Sbjct: 265 LRDYSKAIIREIGVETGGSNIQFAVNPVDGDVIVIEMNP 303



 Score = 54.7 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 40/272 (14%), Positives = 96/272 (35%), Gaps = 38/272 (13%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLV------- 68
           AL   GF+   +         D D S  L    L  +   N++     E G++       
Sbjct: 587 ALSAEGFETIMVNSNPETVSTDYDTSDRLYFEPLTKEDVLNIIEAENPE-GVIVQFGGQT 645

Query: 69  --------QAILELLEIPYT----HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116
                   Q  L+  + P       +   +  ++ D+ R ++++    +   P+ +   +
Sbjct: 646 PLKLAVPLQKYLDSPDCPVKTKIWGTSPDSIDIAEDRERFEKILWELNITQPPNGIARSY 705

Query: 117 T--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD- 173
              +     I  P V++P        + ++  DQ +   +  +        +LI+++++ 
Sbjct: 706 DEALAVAKRIGYPVVVRPSYVLGGRAMEIVFSDQDLERYMTYAVQVEPDHPILIDKFLEN 765

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAF 232
            IE+    + DA+       + +   +  E    S +S   +P   +   + + ++    
Sbjct: 766 AIEVDVDTLADATGKSIIGGIME---HIEEAGVHSGDSACSVPFTTLTPTVLETIRNWTS 822

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              Q +   G+   +  +     +V+ LE N 
Sbjct: 823 QLAQVLKVVGL--MNIQYAVQGEQVYILEANP 852


>gi|262341277|ref|YP_003284132.1| biotin carboxylase [Blattabacterium sp. (Blattella germanica) str.
           Bge]
 gi|262272614|gb|ACY40522.1| biotin carboxylase [Blattabacterium sp. (Blattella germanica) str.
           Bge]
          Length = 453

 Score = 78.6 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 77/221 (34%), Gaps = 18/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---- 109
            +H  +G   E+    ++     I +  +         +K+ +K+ +   G+   P    
Sbjct: 77  AIHPGYGFLSENAYFSSMCHKHGIKFIGAKPNHMIQMGNKISAKKTMKKAGISCLPGSDC 136

Query: 110 -SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGD 164
            S    +        I  P +IK + GG   GI  +   +S+         ++ S     
Sbjct: 137 FSEFSYKEIEYFADKIGYPVIIKAVSGGGGKGIRSVFDKKSLKNSWEEAQKEAWSCFRKK 196

Query: 165 QLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            + IE+ + D   +   ++GD       ++           K             +   +
Sbjct: 197 DMYIEKLILDPRHIEIQILGDKYGKACHLSERDCSIQRRNQK----LVEEAPSPFLTSSL 252

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            K++   A  A + I   G+   +FL D  ++  +++E+N 
Sbjct: 253 RKKMGNEAVKAAEFIHYEGVGTMEFLVD-QNKNFYFMEMNP 292


>gi|291615311|ref|YP_003525468.1| acetyl-CoA carboxylase, biotin carboxylase [Sideroxydans
           lithotrophicus ES-1]
 gi|291585423|gb|ADE13081.1| acetyl-CoA carboxylase, biotin carboxylase [Sideroxydans
           lithotrophicus ES-1]
          Length = 451

 Score = 78.6 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 36/222 (16%), Positives = 81/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+       E     +         L  DK+ +K  +   GVPV P +  
Sbjct: 77  AIHPGYGFLSENADFSERCEKSGFVFIGPRAETIRLMGDKVSAKNAMKKAGVPVVPGVDG 136

Query: 112 LVNRFTMDSQHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
            +     +   +   I  P +IK   GG   G+ V+  + ++   +     ++ +  +  
Sbjct: 137 ALPDDPAEIMRIAKFIGYPVIIKASGGGGGRGMRVVHTEAALLNAVTMTKTEAQAAFNNP 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E++++    +   V+ D   +   +            K          PA  +   
Sbjct: 197 MVYMEKFLENPRHIEIQVLADQHGNAVFLGERDCSMQRRHQK-----VIEEAPAPHLNTK 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +  ++      A + IG RG    +FL+   + + +++E+N 
Sbjct: 252 LRDKIGERCAEACRKIGYRGAGTFEFLY--ENDEFYFIEMNT 291


>gi|255261649|ref|ZP_05340991.1| pyruvate carboxylase [Thalassiobium sp. R2A62]
 gi|255103984|gb|EET46658.1| pyruvate carboxylase [Thalassiobium sp. R2A62]
          Length = 1147

 Score = 78.6 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 33/221 (14%), Positives = 75/221 (33%), Gaps = 18/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       +   I +            DK  ++ V     VPV P+  V
Sbjct: 80  AIHPGYGLLSENPEFVDACDAAGITFIGPKAATMRKLGDKASARHVAIDADVPVIPATEV 139

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ----SSSWNHGDQ 165
               M         +  P ++K   GG   G+  I  +  +   +L+    + +     +
Sbjct: 140 LGDDMALIKKQAAEVGYPLMLKASWGGGGRGMRPIFGEDELEEKVLEGRREAEAAFGNGE 199

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
             +E+ +     +   ++GD   ++  +           ++  +       PA  +    
Sbjct: 200 GYLEKMITRARHVEVQILGDQEGNIYHLYE-----RDCSVQRRNQKVVERAPAPYLSGTQ 254

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +++  L     Q +        +FL D  S + +++E+N 
Sbjct: 255 REQICNLGKKICQHVNYECAGTVEFLMDMDSGEFYFIEVNP 295


>gi|253576161|ref|ZP_04853493.1| carbamoyl-phosphate synthase, large subunit [Paenibacillus sp. oral
           taxon 786 str. D14]
 gi|251844504|gb|EES72520.1| carbamoyl-phosphate synthase, large subunit [Paenibacillus sp. oral
           taxon 786 str. D14]
          Length = 1070

 Score = 78.6 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 47/286 (16%), Positives = 107/286 (37%), Gaps = 33/286 (11%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI---------DVD------------RSVGLV 45
           G ++E + +   G     AL++ G +V  I         D +              V  +
Sbjct: 21  GQAAEFDYA---GTQACQALKEEGVEVVLINSNPATIMTDTNMADKVYIEPITLEFVTQI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   +PD     L G  G +  V+     +LE   +    + + +   + D+   ++++ 
Sbjct: 78  IRQERPDGLLPTLGGQTGLNMAVELARAGVLERENVKLLGTQLTSIEKAEDRDLFRELMR 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
               PV  S ++      ++  + I  P +++P       G  +   ++ +   +     
Sbjct: 138 ELEQPVPESAIITSVEEALEFANEIGYPVIVRPAYTLGGTGGGICATEEELRETVASGIR 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
           ++   Q LIE+ + G  E+   VM DA+ +   I V   + +     ++  +        
Sbjct: 198 YSPIGQCLIEKSIAGMKEIEYEVMRDANDN--CIVVCNMENFDPVGVHTGDSIVVAPSQT 255

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +    Y+ ++  +    +A+   G     F  DP S + + +E+N 
Sbjct: 256 LSDREYQMLRSASLKIIRALNIEGGCNVQFALDPQSFQYYVIEVNP 301



 Score = 71.7 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 38/262 (14%), Positives = 98/262 (37%), Gaps = 28/262 (10%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHG--------NFGEDGL 67
           A++ AG++   I         D + S  L    L  +   NV+           FG    
Sbjct: 589 AIQKAGYEAVIINNNPETVSTDFNTSDRLYFEPLFFEDVMNVIEEEKPVGVIVQFGGQTA 648

Query: 68  V--QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHL 123
           +   A L+   +    + + +   + D+ + + ++S  G+       V      + +   
Sbjct: 649 INLAAPLQAAGVRILGTSLESIDEAEDRKKFEALLSKLGIAQPKGSTVTSVEEAVGTAQA 708

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           +  P +++P        + ++  DQ +   + ++ + N    +LI++Y+ G E+    + 
Sbjct: 709 LGYPVLVRPSYVLGGRAMEIVYSDQELLRYMEEAVNINPQHPVLIDRYMLGKEVEVDAIS 768

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRG 242
           D    +    +   +           +S  V P + +  ++ +++  +     + +   G
Sbjct: 769 DGETVLIPGIMEHIERAGVHS----GDSIAVYPPQHLSAELKEKIVEITVKIARELKTVG 824

Query: 243 ISRSDFLFDPLSRKVFWLEINV 264
           +    F+    + +VF +E+N 
Sbjct: 825 LVNIQFVI--YNNEVFVIEVNP 844


>gi|254241362|ref|ZP_04934684.1| hypothetical protein PA2G_02057 [Pseudomonas aeruginosa 2192]
 gi|126194740|gb|EAZ58803.1| hypothetical protein PA2G_02057 [Pseudomonas aeruginosa 2192]
          Length = 649

 Score = 78.6 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 41/220 (18%), Positives = 81/220 (36%), Gaps = 19/220 (8%)

Query: 58  LHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
           +H  +G   E+      +E   + +      A      K  +K ++   GVP+ P     
Sbjct: 82  IHPGYGFLSENAGFARAIEEAGLLFLGPPASAIDAMGSKSAAKALMEQAGVPLVPGYHGE 141

Query: 115 RFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQL 166
              ++    +   I  P ++K   GG   G+ V++++  +   L     ++ +     ++
Sbjct: 142 AQDLETFRAAAERIGYPVLLKATAGGGGKGMKVVERESELAETLASAQREAQAAFGDARM 201

Query: 167 LIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIY 224
           L+E+YV     +   V  D   +   +            K          PA  +  ++ 
Sbjct: 202 LVEKYVLQPRHVEIQVFADQRGNCLYLNERDCSIQRRHQK-----VVEEAPAPGLSPELR 256

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +   A  A QAIG  G    +FL D      F++E+N 
Sbjct: 257 RAMGEAAVKAAQAIGYVGAGTVEFLLDAR-GDFFFMEMNT 295


>gi|325918552|ref|ZP_08180665.1| biotin carboxylase ;acetyl-CoA carboxylase carboxyltransferase
           subunit alpha [Xanthomonas vesicatoria ATCC 35937]
 gi|325535237|gb|EGD07120.1| biotin carboxylase ;acetyl-CoA carboxylase carboxyltransferase
           subunit alpha [Xanthomonas vesicatoria ATCC 35937]
          Length = 455

 Score = 78.6 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 41/225 (18%), Positives = 82/225 (36%), Gaps = 27/225 (12%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+      +E     +         L  DK+ + + + + GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAERVEESGFIFIGPKADTIRLMGDKVEAIRAMKAAGVPCVPGSGG 136

Query: 111 -----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWN 161
                I+ N         I  P +IK   GG   G+ V+  + ++   +     ++ +  
Sbjct: 137 PLGDDIVAN---TKVAREIGYPVIIKAAGGGGGRGMRVVHSEAALKAAIETTKSEAKAAF 193

Query: 162 HGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-I 219
             DQ+ +E++++    +   V+ D       +            K          PA  I
Sbjct: 194 SNDQVYMEKFLENPRHVEIQVLADGQGGAIHLGERDCSMQRRHQK-----VVEEAPAPGI 248

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             ++  E+ ++   A   IG RG    +FLF     + +++E+N 
Sbjct: 249 TEELRAEIGKVCVDACIRIGYRGAGTFEFLF--EGGRFYFIEMNT 291


>gi|187479769|ref|YP_787794.1| acetyl-CoA carboxylase biotin carboxylase subunit [Bordetella avium
           197N]
 gi|115424356|emb|CAJ50909.1| biotin carboxylase [Bordetella avium 197N]
          Length = 462

 Score = 78.6 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 78/220 (35%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+      +E   + +            DK  +++     GVP  P    
Sbjct: 86  AVHPGYGFLSENAAFAEAVEHAGLIFVGPDAGIIRRMGDKAAARRAAQEAGVPTVPGSDG 145

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGDQ 165
            +      +    +I  P ++K   GG   GI V+  +  +    PL   ++ +      
Sbjct: 146 VVATLDEALTHAAVIGYPLMVKAAAGGGGRGIRVVADEAELREQMPLAQAEAKAAFGDGG 205

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+++     +   V+GD    V           S + +   +      P  +   + 
Sbjct: 206 VYLERFLPRARHIEVQVLGDGRHAVHLFE----RECSLQRRRQKIMEEAPSPI-LSEALR 260

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +   A    QA+  RG    ++L+D    + +++E+N 
Sbjct: 261 ASLCASAVRLAQAVSYRGAGTLEYLYDEARGEFYFIEMNT 300


>gi|78046119|ref|YP_362294.1| acetyl-CoA carboxylase biotin carboxylase subunit [Xanthomonas
           campestris pv. vesicatoria str. 85-10]
 gi|325925569|ref|ZP_08186956.1| biotin carboxylase ;acetyl-CoA carboxylase carboxyltransferase
           subunit alpha [Xanthomonas perforans 91-118]
 gi|78034549|emb|CAJ22194.1| biotin carboxylase [Xanthomonas campestris pv. vesicatoria str.
           85-10]
 gi|325544021|gb|EGD15417.1| biotin carboxylase ;acetyl-CoA carboxylase carboxyltransferase
           subunit alpha [Xanthomonas perforans 91-118]
          Length = 455

 Score = 78.6 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 41/225 (18%), Positives = 83/225 (36%), Gaps = 27/225 (12%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+      +E     +         L  DK+ + + + + GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAERVEQSGFIFIGPKADTIRLMGDKVEAIRAMKAAGVPCVPGSGG 136

Query: 111 -----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWN 161
                I+ N         I  P +IK   GG   G+ V+  + ++   +     ++ +  
Sbjct: 137 PLGDDIVAN---TKVAREIGYPVIIKAAGGGGGRGMRVVHSEAALKAAIETTKSEAKAAF 193

Query: 162 HGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-I 219
             DQ+ +E++++    +   V+ D       +            K          PA  I
Sbjct: 194 SNDQVYMEKFLENPRHVEIQVLADGQGGAIHLGERDCSMQRRHQK-----VVEEAPAPGI 248

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             ++  E+ ++   A   IG RG    +FLF   + + +++E+N 
Sbjct: 249 TEELRNEIGKVCVDACIRIGYRGAGTFEFLF--ENGRFYFIEMNT 291


>gi|327401412|ref|YP_004342251.1| acetyl-CoA carboxylase, biotin carboxylase [Archaeoglobus veneficus
           SNP6]
 gi|327316920|gb|AEA47536.1| acetyl-CoA carboxylase, biotin carboxylase [Archaeoglobus veneficus
           SNP6]
          Length = 491

 Score = 78.6 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 40/219 (18%), Positives = 77/219 (35%), Gaps = 17/219 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       E   I +             K+ +++++S  GVPV P    
Sbjct: 77  AIHPGYGFLAENAEFARRCEEEGIKFIGPSPDVIEAMGSKLNARKLMSEAGVPVVPGSPE 136

Query: 114 NRFTMDS---QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS----SSWNHGDQL 166
            R   D+      I  P  IK   GG  +GI +   ++ +     +S      +     +
Sbjct: 137 LRNLDDAYKWAEKIGYPVAIKASGGGGGIGISIAWTEEELEAAYHRSKTLGEKYFRDPAV 196

Query: 167 LIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
            IE+Y      +   V+ D   +V  +   +        K             +  +  +
Sbjct: 197 YIEKYMPKPRHIEFQVLADEHGNVIHLGERECSIQRRHQK----VIEEAPSPVVDEETRE 252

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           ++ RLA    + IG       +FL+     + ++LE+N 
Sbjct: 253 KIGRLAVKGARHIGYTNAGTMEFLY--YEGEFYFLEMNT 289


>gi|302380992|ref|ZP_07269453.1| pyruvate carboxylase [Finegoldia magna ACS-171-V-Col3]
 gi|302311213|gb|EFK93233.1| pyruvate carboxylase [Finegoldia magna ACS-171-V-Col3]
          Length = 1139

 Score = 78.6 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 35/222 (15%), Positives = 72/222 (32%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+           I +            DK++SK V    GV     +  
Sbjct: 80  AIHPGYGFLSENAEFARRCRENGIIFVGPDESVLHSLGDKVQSKLVAKKAGVQTIEGVET 139

Query: 114 N----RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI-----PLDLLQSSSWNHGD 164
                   ++  + I  P ++K   GG   G+ +++K+  +             ++   D
Sbjct: 140 PIRNKNEALEIANQIGYPVMVKACAGGGGRGMRIVEKESDLMNSFVSAQNESKKAFGSDD 199

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLD 222
            + IE+Y+     +   ++ D   ++  +            K          PA  I   
Sbjct: 200 -MFIEKYIRNPKHIEVQIIADNHGNILHLYERDCSIQRRHQK-----VVEFAPAFSISEK 253

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              E+   A    + +G       +FL D      +++E+N 
Sbjct: 254 TKNELHNDAIKICKEVGYTNAGTVEFLVDEDENH-YFIEVNP 294


>gi|209963749|ref|YP_002296664.1| propionyl-CoA carboxylase alpha chain [Rhodospirillum centenum SW]
 gi|209957215|gb|ACI97851.1| propionyl-CoA carboxylase alpha chain [Rhodospirillum centenum SW]
          Length = 666

 Score = 78.6 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 39/202 (19%), Positives = 71/202 (35%), Gaps = 14/202 (6%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL----VNRFTMDSQHLISPP 127
           L+   I +    + A     DK+ SK++  + GV   P  L     +   +     I  P
Sbjct: 95  LKADGIVFIGPDVHAIGAMGDKIESKKLAKAAGVSTVPGYLGVIADDAEAVAIAREIGYP 154

Query: 128 YVIKPLKGGSSLGIIVIKKDQS----IPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182
            +IK   GG   G+ V   D            ++ S    D++ IE+Y +D   +   V+
Sbjct: 155 VMIKASAGGGGKGMRVAWNDAEARDGFRSATNEARSSFADDRVFIEKYIIDPRHIEIQVL 214

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            DA  +   +   +        K             +     + +   A    +A+  R 
Sbjct: 215 ADAHGNCVYLGERECSIQRRHQK----VIEEAPSPFLDAATRRAMGEQAVALAKAVQYRS 270

Query: 243 ISRSDFLFDPLSRKVFWLEINV 264
               +F+ D   R  ++LE+N 
Sbjct: 271 AGTVEFIVDK-DRNFYFLEMNT 291


>gi|218531929|ref|YP_002422745.1| urea carboxylase [Methylobacterium chloromethanicum CM4]
 gi|218524232|gb|ACK84817.1| urea carboxylase [Methylobacterium chloromethanicum CM4]
          Length = 1176

 Score = 78.6 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 40/256 (15%), Positives = 85/256 (33%), Gaps = 30/256 (11%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      L    I +             K  ++++  + GVP+ P   +
Sbjct: 77  AVHPGYGFLSENVGFAERLAAEGIRFIGPRPEHLRAFGLKHTARELAKASGVPLLPGTDL 136

Query: 114 ---NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQL 166
                  + +   I  P ++K   GG  +G+ +    Q +                  ++
Sbjct: 137 LPDRETALRAAEAIGYPVMLKSTAGGGGIGMQLCHSAQELAERFAAVERTARASFGDARV 196

Query: 167 LIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIY 224
            +E++V     +   + GD    V  +           L+  +       PA  +   + 
Sbjct: 197 YLERFVAQARHVEVQIFGDGRGRVVALGE-----RDCSLQRRNQKVIEETPAPGLSDAVR 251

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI---FPEMAAYA 281
             +   A    +++        +F++DP      +LE+N +       +    P   A  
Sbjct: 252 ARLHAAAVALGESVAYASAGTVEFIYDPDREDFSFLEVNTR-------LQVEHPVTEAVF 304

Query: 282 GYSFRELLLWMVEDAS 297
           G    +L+ WMV  A+
Sbjct: 305 GI---DLVEWMVRQAA 317


>gi|149277469|ref|ZP_01883610.1| biotin carboxylase, subunit of acetyl CoA carboxylase [Pedobacter
           sp. BAL39]
 gi|149231702|gb|EDM37080.1| biotin carboxylase, subunit of acetyl CoA carboxylase [Pedobacter
           sp. BAL39]
          Length = 446

 Score = 78.6 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 80/221 (36%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+    ++     I +  +         DK  +K+ + + GVP  P    
Sbjct: 77  AIHPGYGFLSENAKFSSVCRDYGIKFIGATPEQINSMGDKASAKETMKNAGVPTIPGSEG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS-----SSWNHGD 164
            +   +  +   + +  P ++K   GG   G+ V+ KD+        +     +++ +  
Sbjct: 137 LLESVKEGITIANEMGYPVILKATAGGGGRGMRVVWKDEDFENAWDSARQESGAAFGNDG 196

Query: 165 QLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
             L E+Y+ D   +   ++GD       ++           K             +  ++
Sbjct: 197 LYL-EKYIEDPRHIEIQIIGDQYGKACHLSERDCSIQRRHQK----LVEEAPSPFMTPEL 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +++   A     A+   G    +FL D   R  +++E+N 
Sbjct: 252 REKMGEAAIKGAIAVQYEGAGTIEFLVDKH-RNFYFMEMNT 291


>gi|157125644|ref|XP_001654407.1| carboxylase:pyruvate/acetyl-coa/propionyl-coa [Aedes aegypti]
 gi|108873523|gb|EAT37748.1| carboxylase:pyruvate/acetyl-coa/propionyl-coa [Aedes aegypti]
          Length = 698

 Score = 78.6 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 36/222 (16%), Positives = 77/222 (34%), Gaps = 20/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H  +G   E+     + +   + +      A      K  SK ++S  GVP+      
Sbjct: 107 AIHPGYGFLSENVEFAELCQQEGVIFIGPPASAIRDMGIKSTSKHIMSEAGVPIINGYHG 166

Query: 113 ---VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS-----SWNHGD 164
               +   M     I  P +IK ++GG   G+ + + +      L  +      ++    
Sbjct: 167 EDQSDERLMQEAKKIGFPLMIKAVRGGGGKGMRIAETEADFFPALQSARTESEKAFG-DS 225

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            +L+E+YV     +   V  D   +   +           ++          PA  +  +
Sbjct: 226 SMLLERYVRSPRHVEVQVFADHHGNAVYLYE-----RDCSVQRRHQKIIEEAPAPGLSEE 280

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +  ++   A  A +A+   G    +F+ D       ++E+N 
Sbjct: 281 LRVQLGEAAVRAAKAVNYVGAGTVEFILDKEDLSFHFMEMNT 322


>gi|16265196|ref|NP_437988.1| putative propionyl-CoA carboxylase alpha chain protein
           [Sinorhizobium meliloti 1021]
 gi|15141336|emb|CAC49848.1| putative propionyl-CoA carboxylase alpha chain protein
           [Sinorhizobium meliloti 1021]
          Length = 670

 Score = 78.6 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 40/236 (16%), Positives = 81/236 (34%), Gaps = 15/236 (6%)

Query: 38  VDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSK 97
           V  ++   +     D      +G   E+      LE   + +    + A     DK+ SK
Sbjct: 65  VIENILAAIRRTGADAVHPG-YGFLSENAAFAEALEKDGVTFIGPPVRAIEAMGDKITSK 123

Query: 98  QVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153
           ++ +  GV   P  +      D        I  P +IK   GG   G+ +   ++     
Sbjct: 124 KLAAEAGVFTVPGHMGLIEDADEAARIAAEIGFPVMIKASAGGGGKGMRIAWNEREAREG 183

Query: 154 LL----QSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS 208
                 ++ S    D++ IE++V +   +   V+GD   ++  +   +        K   
Sbjct: 184 FQSSRNEAKSSFGDDRIFIEKFVTEPRHIEIQVLGDKHGNILYLGERECSIQRRNQK--- 240

Query: 209 LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
                     +     + +   A    +A+G       +F+ D   R  ++LE+N 
Sbjct: 241 -VIEEAPSPFLDEKTRRAMGEQAVALAKAVGYHSAGTVEFIVDA-GRNFYFLEMNT 294


>gi|73669099|ref|YP_305114.1| pyruvate carboxylase subunit A [Methanosarcina barkeri str. Fusaro]
 gi|12018158|gb|AAG45427.1|AF317651_4 pyruvate carboxylase ATP-binding subunit PYCA [Methanosarcina
           barkeri]
 gi|72396261|gb|AAZ70534.1| pyruvate carboxylase subunit A [Methanosarcina barkeri str. Fusaro]
          Length = 493

 Score = 78.6 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 77/221 (34%), Gaps = 20/221 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+ +     E   I +        A    K+R++ ++   GVPV P    
Sbjct: 77  AIHPGYGFLSENPVFAKRCEEEGIVFIGPPSHVIAEMGSKIRARNLMVKAGVPVVPGTKD 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGD 164
            +      +     I  P +IK   GG  +G+ V+         L     +  S++    
Sbjct: 137 AVEDPVEAVKIAEEIGYPVLIKASAGGGGIGMKVVNSSDEFATALSSTRQMAGSAFG-DS 195

Query: 165 QLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            + IE+YV+    +   ++ D   +   ++  +        K             +  ++
Sbjct: 196 SVFIEKYVEEPRHIEIQILADGYGNTIYLSDRECSIQRRHQK----LIEEAPSPIMTPEL 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             ++   A    + IG       +FL+       ++LE+N 
Sbjct: 252 RAKMGEAAVRVAKTIGYVNAGTVEFLYSK--GNFYFLEVNT 290


>gi|258404458|ref|YP_003197200.1| carbamoyl-phosphate synthase, large subunit [Desulfohalobium
           retbaense DSM 5692]
 gi|257796685|gb|ACV67622.1| carbamoyl-phosphate synthase, large subunit [Desulfohalobium
           retbaense DSM 5692]
          Length = 1078

 Score = 78.6 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 49/278 (17%), Positives = 103/278 (37%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G++V  I         D               SV  ++A  +PD    
Sbjct: 29  SGTQALKALKEEGYEVVLINSNPATIMTDPGLADRTYVEPLEPESVAKIIAKERPDALLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G  G +  V      +LE   +    + +     +  + + +  + + G+ V  S +
Sbjct: 89  TLGGQTGLNTAVSVAESGVLEKYGVELIGASLEVIQKAESRRQFRTAMENIGLTVPQSGI 148

Query: 113 VNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +      +  + +S P +++P       G  V    + +     Q  + +   ++++E+
Sbjct: 149 ASSLEEVREWTNTLSFPMIVRPAFTLGGTGGGVAYNREDLEEIARQGLAASPSHEVMLEE 208

Query: 171 YVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            V G  E    VM D   + V   ++   D           +S  V PA+ +    ++++
Sbjct: 209 SVLGWKEYELEVMRDKHDNCVIICSIENLDAMGVHT----GDSVTVAPAQTLTDREFQKM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P +  +  +E+N 
Sbjct: 265 RDASLAIMREIGVETGGSNVQFAVNPENGDMVVIEMNP 302



 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 34/218 (15%), Positives = 81/218 (37%), Gaps = 14/218 (6%)

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQHLISPPYVIKP 132
             +P   +   +   + D+ R   +++  G+    + L       +D    I  P V++P
Sbjct: 661 AGVPILGTTPDSIDRAEDRERFHALLNKLGLKQPDNGLATSEEGALDVAERIGYPVVVRP 720

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTE 191
                   + ++     +      +   +    +LI++++ G +E+    + D +     
Sbjct: 721 SYVLGGRAMEIVYDSDELKNYFRDAVVASPDHPILIDKFLQGAVEIDVDALCDGTQTYVG 780

Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
             +   +    E    S +S  VLP   +  +   E++R +    + +G  G+    F  
Sbjct: 781 GVMEHIE----EAGVHSGDSACVLPPHTVSQETIDEIRRQSSALAEELGVVGLMNVQFAV 836

Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
              + ++F LE+N +   T     P ++   G    +L
Sbjct: 837 --QNGEIFILEVNPRASRT----VPFVSKATGVPLAKL 868


>gi|242373906|ref|ZP_04819480.1| acetyl-CoA carboxylase [Staphylococcus epidermidis M23864:W1]
 gi|242348460|gb|EES40062.1| acetyl-CoA carboxylase [Staphylococcus epidermidis M23864:W1]
          Length = 453

 Score = 78.6 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 83/220 (37%), Gaps = 18/220 (8%)

Query: 56  NVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
           N +H  +G   E       +E  +I +         L  DK+ ++Q V + GVPV P   
Sbjct: 75  NAIHPGYGFLSESTTFAEAVEDNDIHFIGPNKKTMELMGDKITARQTVDAAGVPVIPGST 134

Query: 113 VN----RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS----WNHGD 164
                     +    I  P V+K   GG   GI ++K+ + +   L ++ S    + + D
Sbjct: 135 DEVQNVEEIKELAEDIGYPVVLKAASGGGGKGIRIVKEPEQLEKSLKEAKSEGQKYFNDD 194

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           ++ +E ++     +   V+GD   +   +            + +         + +  + 
Sbjct: 195 RVYVEAFIPVAKHVEVQVIGDGKDNYVHLGERDCSV----QRKNQKLIEESPCSALSEER 250

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            +++   A    +A   R     +FL    +   +++E+N
Sbjct: 251 REQICNDAVKVARASNYRSAGTIEFLVTEDAH--YFIEMN 288


>gi|32265694|ref|NP_859726.1| biotin carboxylase [Helicobacter hepaticus ATCC 51449]
 gi|32261742|gb|AAP76792.1| biotin carboxylase [Helicobacter hepaticus ATCC 51449]
          Length = 454

 Score = 78.6 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 80/225 (35%), Gaps = 14/225 (6%)

Query: 49  LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
           LK D  F   +G   E+     I     I +         L  DK ++K V+   GVPV 
Sbjct: 79  LKADAIFPG-YGFLSENQNFVEICSHHSIEFIGPTADVMVLMSDKSKAKDVMKEAGVPVI 137

Query: 109 ---PSILVN-RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSW 160
                 L + +        I  P ++K   GG   G+ V++K + +         ++ S 
Sbjct: 138 LGSDGALKDYKEAQKIADEIGYPVILKAAAGGGGRGMRVVEKPEMLKNLYLAAESEAVSA 197

Query: 161 NHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI 219
                + +E+++     +   ++ D   +V  I          + K             +
Sbjct: 198 FGDGTIYMEKFIRNPKHIEVQILADKHGNVLHIGERDCSAQRRQQK----LIEESPAVVL 253

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             ++ + + + A  A Q I   G    +FL D      +++E+N 
Sbjct: 254 KPEVRQRLLQTAVKAAQYIKYVGAGTFEFLLDANYEDFYFMEMNT 298


>gi|226425237|gb|ACO53618.1| biotin carboxylase 3 [Arachis hypogaea]
          Length = 540

 Score = 78.6 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 80/220 (36%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
           +LH  +G   E+ +   +     I +      +  +  DK  ++  + + GVP  P    
Sbjct: 147 MLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIWVMGDKSTARDTMKNAGVPTVPGSDG 206

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS----IPLDLLQSSSWNHGDQ 165
            +      +   + I  P +IK   GG   G+ + K+       +     ++++    D 
Sbjct: 207 LLQSTEEAIRLANEIGFPVMIKATAGGGGRGMRLAKEPGEFVKLLQQAKSEAAAAFGNDG 266

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+Y+ +   +   V+ D   +V               K             +  ++ 
Sbjct: 267 VYLEKYIQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLL----EEAPSPALTPELR 322

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K +   A  A  +IG  G+   +FL D      +++E+N 
Sbjct: 323 KAMGDAAVAAAASIGYIGVGTVEFLLDER-GSFYFMEMNT 361


>gi|255279698|ref|ZP_05344253.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Bryantella
           formatexigens DSM 14469]
 gi|255269471|gb|EET62676.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Bryantella
           formatexigens DSM 14469]
          Length = 451

 Score = 78.6 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 78/221 (35%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  FG   E+    ++ E   I +        A   DK  +++ +   G+PV P    
Sbjct: 77  AIHPGFGFLSENARFASLCERCGIDFIGPSAQCIADMGDKAEARRKMQQAGIPVIPGTEN 136

Query: 114 NRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS-----SSWNHGD 164
                D+       I  P +IK   GG   G+ V+++ +        +      ++   D
Sbjct: 137 AMTDADAARRFADEIGYPVIIKASAGGGGKGMRVVEQPEQFEEAFRLAQRETQLAFG-DD 195

Query: 165 QLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            + +E+Y+     +   ++ D   +   +            K             +  ++
Sbjct: 196 HMYVEKYLHPVRHIEFQILADRQGNTIHLGERDCSIQRRHQK----LVEEAPAVFLSEEL 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +E+ + A  A +A G       +FL D      +++E+N 
Sbjct: 252 REEMGKAAVDAAKAAGYYSAGTVEFLVDSR-NHFYFMEMNT 291


>gi|150398333|ref|YP_001328800.1| pyruvate carboxylase [Sinorhizobium medicae WSM419]
 gi|150029848|gb|ABR61965.1| pyruvate carboxylase [Sinorhizobium medicae WSM419]
          Length = 1184

 Score = 78.6 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 77/221 (34%), Gaps = 18/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E         +  I +            +K+ ++ +  S GVPV P+   
Sbjct: 117 AIHPGYGLLSESPEFAEACAVNGITFIGPKPETMRQLGNKVAARNLAISVGVPVVPATEP 176

Query: 114 NRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSWNHGDQ 165
                D        I  P ++K   GG   G+  I+  + +         ++ +    D+
Sbjct: 177 LPDDTDEIKRLAEEIGYPVMLKASWGGGGRGMRAIRDPKDLIREVTEAKREAKAAFGKDE 236

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           + +E+ V+    +   ++GD   +V  +            K          PA  +    
Sbjct: 237 VYLEKLVERARHVESQILGDTHGNVVHLFERDCSIQRRNQK-----VVERAPAPYLTEAQ 291

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +E+   +    +A    G    ++L D  + + +++E+N 
Sbjct: 292 RQELADYSLKIARATSYIGAGTVEYLMDADTGRFYFIEVNP 332


>gi|13430734|gb|AAK25989.1|AF360279_1 putative acetyl-CoA carboxylase [Arabidopsis thaliana]
          Length = 537

 Score = 78.6 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 80/220 (36%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
           +LH  +G   E+ L   +     I +      +  +  DK  +++ + + GVP  P    
Sbjct: 149 MLHPGYGFLSENALFVEMCRDHGINFIGPNPDSIRVMGDKATARETMKNAGVPTVPGSDG 208

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS----IPLDLLQSSSWNHGDQ 165
            +      +   + I  P +IK   GG   G+ + K+       +     ++++    D 
Sbjct: 209 LLQSTEEAVRVANEIGFPVMIKATAGGGGRGMRLAKEPGEFVKLLQQAKSEAAAAFGNDG 268

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             +E++V +   +   V+ D   +V               K             +  ++ 
Sbjct: 269 CYLEKFVQNPRHIEFQVLADKFGNVVHFGERDCSIQRRNQKLL----EEAPSPALTAELR 324

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K +   A  A  +IG  G+   +FL D      +++E+N 
Sbjct: 325 KAMGDAAVAAAASIGYIGVGTVEFLLDER-GSFYFMEMNT 363


>gi|182413493|ref|YP_001818559.1| acetyl-CoA carboxylase, biotin carboxylase [Opitutus terrae PB90-1]
 gi|177840707|gb|ACB74959.1| acetyl-CoA carboxylase, biotin carboxylase [Opitutus terrae PB90-1]
          Length = 454

 Score = 78.6 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 74/220 (33%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+       E   I +      +  +  DK  +K+ V   GVP+ P    
Sbjct: 77  AIHPGYGFLSENPKFAEQCESCNIKFIGPKSKSIRMMGDKSIAKETVRKAGVPIVPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD----QSIPLDLLQSSSWNHGDQ 165
            +            I  P +IK + GG   G+ +   D    +       ++        
Sbjct: 137 PVGSEADATKIARKIGYPVIIKAVAGGGGRGMRIAHNDVSFAKEYHTARSEAEKAFGNGA 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+Y++    +   ++ D+   V  +            K             +  D+ 
Sbjct: 197 VYVEKYIEKPRHIEFQILADSHGKVIHLGERDCSVQRRHQK----LIEESPSPFLSADLR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K++ + A  A +A         +FL D      +++E+N 
Sbjct: 253 KKMGKAAVRAAEAAEYENAGTIEFLVDAKGN-YYFIEMNT 291


>gi|320528991|ref|ZP_08030083.1| carbamoyl-phosphate synthase, large subunit [Selenomonas artemidis
           F0399]
 gi|320138621|gb|EFW30511.1| carbamoyl-phosphate synthase, large subunit [Selenomonas artemidis
           F0399]
          Length = 1075

 Score = 78.6 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 53/287 (18%), Positives = 118/287 (41%), Gaps = 35/287 (12%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQIDVDRS---------------------VGLV 45
           G ++E + +   G     AL++ G +V  ++ + +                     +  +
Sbjct: 21  GQAAEFDYA---GSQACRALKEDGLEVVLVNSNPATIMTDTNIADRVYIEPLTVDFLSEI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +A  KPD     L G  G +  VQ     ILE   +    + + A   + D+ R K+ + 
Sbjct: 78  IAKEKPDGLLATLGGQAGLNLAVQLAEKGILEQHGVELLGTSLDAIEKAEDRERFKETME 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G P+  S +V      ++  + I  P +++P       G  + + ++ +   +++  +
Sbjct: 138 KLGEPIPESTIVEDVHSAVEFANKIGYPVIVRPAYTMGGTGGGIAENEEELIAIVIKGLN 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
           ++   Q+LIE+ V G  E+   V+ D   +   I V   + +     ++  +S  V PA+
Sbjct: 198 YSMIGQVLIERSVAGWKEIEFEVIRDGRDN--CITVCSMENFDPVGVHT-GDSIVVAPAQ 254

Query: 219 -IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +    Y+ ++  +    + +G  G   + +  D  S + + +E+N 
Sbjct: 255 TLTDYEYQMLRSASLRIIRELGIEGGCNAQYALDTQSDRYYVIEVNP 301



 Score = 69.8 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 43/263 (16%), Positives = 92/263 (34%), Gaps = 30/263 (11%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLV------- 68
           AL   G +   I         D D S  L    L  +   N++      DG++       
Sbjct: 582 ALRSMGIEAIIINNNPETVSTDFDISDRLYFEPLTVEDVLNIVD-KEKPDGIIVQFGGQT 640

Query: 69  ----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQH 122
                A LE   +    + +     S D+ R  +V++  G+     I V      +    
Sbjct: 641 AINLAAALERAGLRVYGTSVDDIDRSEDRERFDEVLTQTGISRPEGISVTNLEDAVAGAK 700

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + ++  +  +   + ++        +L+++Y+ G E+    +
Sbjct: 701 RIGYPVMVRPSYVLGGRAMEIVYNEDELRDYMQRAVKVTPDHPVLVDRYMQGTEVEVDAI 760

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCR 241
            D      ++ +P    +       S +S  V P + +P  +   +         A+  +
Sbjct: 761 SDG----VDVVIPGIMEHIERAGVHSGDSIAVYPPQTLPARVIYTIIDYTKRLAVALHVK 816

Query: 242 GISRSDFLFDPLSRKVFWLEINV 264
           G+    F+      +VF +E+N 
Sbjct: 817 GLLNIQFVV--AHDEVFIIEVNP 837


>gi|312115303|ref|YP_004012899.1| carbamoyl-phosphate synthase L chain ATP-binding protein
           [Rhodomicrobium vannielii ATCC 17100]
 gi|311220432|gb|ADP71800.1| Carbamoyl-phosphate synthase L chain ATP-binding protein
           [Rhodomicrobium vannielii ATCC 17100]
          Length = 674

 Score = 78.6 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 77/220 (35%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H  +G   E+      L+   I +    I A     DK+ SK+  +   V   P  L 
Sbjct: 77  AIHPGYGFLSENAGFAEALKKEGIAFIGPNIEAIKAMGDKIESKKAAAEARVSTVPGYLG 136

Query: 113 ---VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
                   +   + I  P +IK   GG   G+ V +    +    L S++        D+
Sbjct: 137 VIESPEQAITIANDIGYPVMIKASAGGGGKGMRVARSADEVREGFLTSTAEAKSSFGDDR 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE++V+    +   V+GD   +V  +   +        K             +     
Sbjct: 197 VFIEKFVENPRHIEIQVLGDKHGNVVYVFERECSIQRRNQK----VIEEAPSPFLDEATR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K +   A    +A+        +F+ DP     ++LE+N 
Sbjct: 253 KAMGEQAVALSKAVNYESAGTVEFIVDPKKN-FYFLEMNT 291


>gi|254422083|ref|ZP_05035801.1| acetyl-CoA carboxylase, biotin carboxylase [Synechococcus sp. PCC
           7335]
 gi|196189572|gb|EDX84536.1| acetyl-CoA carboxylase, biotin carboxylase [Synechococcus sp. PCC
           7335]
          Length = 447

 Score = 78.6 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 33/220 (15%), Positives = 75/220 (34%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     I     + +      A     DK  +K  +    VP  P    
Sbjct: 78  AIHPGYGFLAENARFAEICADHNLVFIGPTAAAMLAMGDKATAKATMQKVKVPTVPGSEG 137

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGDQ 165
            +            I  P +IK   GG   G+ +++    +         ++ +      
Sbjct: 138 LLNSQEEAAKLAAEIGYPVIIKATAGGGGRGMRLVRAPHELGKMFLAAQGEAEASFGNPG 197

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E++V+    +   ++ D+  +V  +            K           A +   + 
Sbjct: 198 VYLEKFVENPRHIEFQILADSYGNVVHLGERDCSIQRRHQKLL----EEAPSAALDESLR 253

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +++   A  A ++I   G    +FL D  + + +++E+N 
Sbjct: 254 QQMGAAAVRAAESINYVGAGTVEFLVD-RTGEFYFMEMNT 292


>gi|169825269|ref|YP_001692880.1| pyruvate carboxylase [Finegoldia magna ATCC 29328]
 gi|167832074|dbj|BAG08990.1| pyruvate carboxylase [Finegoldia magna ATCC 29328]
          Length = 1139

 Score = 78.6 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 35/222 (15%), Positives = 72/222 (32%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+           I +            DK++SK V    GV     +  
Sbjct: 80  AIHPGYGFLSENAEFARRCRENGIIFVGPDESVLHSLGDKVQSKLVAKKAGVQTIEGVET 139

Query: 114 N----RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI-----PLDLLQSSSWNHGD 164
                   ++  + I  P ++K   GG   G+ +++K+  +             ++   D
Sbjct: 140 PIRNKNEALEIANQIGYPVMVKACAGGGGRGMRIVEKESDLMSSFVSAQNESKKAFGSDD 199

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLD 222
            + IE+Y+     +   ++ D   ++  +            K          PA  I   
Sbjct: 200 -MFIEKYIRNPKHIEVQIIADNHGNILHLYERDCSIQRRHQK-----VVEFAPAFSISEK 253

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              E+   A    + +G       +FL D      +++E+N 
Sbjct: 254 TKNELHNDAIKICKEVGYTNAGTVEFLVDEDENH-YFIEVNP 294


>gi|326798542|ref|YP_004316361.1| carbamoyl-phosphate synthase, large subunit [Sphingobacterium sp.
           21]
 gi|326549306|gb|ADZ77691.1| carbamoyl-phosphate synthase, large subunit [Sphingobacterium sp.
           21]
          Length = 938

 Score = 78.6 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 55/278 (19%), Positives = 104/278 (37%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG   A +L++ G +VS I+ +                      S+  +L   + D    
Sbjct: 29  SGSQAALSLKEEGIEVSIINSNPATIMTDKVIADHVYLLPLTVDSIEKILQERQIDAVLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +    + I E   +      + A   + ++   +Q++   GV V  S +
Sbjct: 89  TMGGQTALNLCIEASNRGIWEKYGVQVIGVDVAAIEKTENREAFRQLMIEIGVGVAKSKI 148

Query: 113 VNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            N F    ++   I  P VI+P       G   + K +     L +    +   ++L+EQ
Sbjct: 149 ANSFLEGKEAAQQIGFPLVIRPSYTLGGTGGGFVHKKEDFEAALSRGLQASPTHEVLVEQ 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            V G  E    ++ D   +V  I   ++    ++       +S  V PA  +    Y+E+
Sbjct: 209 AVLGWKEYELELLRDNKDNVIIICSIEN----FDPMGIHTGDSITVAPAMTLSDTCYQEM 264

Query: 228 QRLAFLAHQAIG-CRGISRSDFLFDPLSRKVFWLEINV 264
           +  A    +AIG   G     F  +P +  +  +EIN 
Sbjct: 265 RNQAIKMMRAIGNFAGGCNVQFSVNPENEDIIAIEINP 302



 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 27/218 (12%), Positives = 78/218 (35%), Gaps = 14/218 (6%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           L+   I    +      L+ D+ R   ++    +P     +       +   + +  P +
Sbjct: 651 LKETGIRIIGTSFEDMDLAEDRGRFSDLLKELDIPYPKYGVAENAEEALKVANEVGYPVL 710

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD--GIELTCGVMGDASL 187
           ++P       G+ ++  D+ +   +++      G+++LI+ ++D      +  +     +
Sbjct: 711 VRPSYVLGGQGMSIVINDEELEKAVIKIMKNMPGNRVLIDHFLDRAEEAESDSICDGEEV 770

Query: 188 DVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
            +  +         +    S  +S  + P  +   + +++   +    +A+  +G+    
Sbjct: 771 HIIGMMEHIEPAGIH----SGDSSAVLPPFSLSTAVQEKMDEYSRKIAKALNVKGLLNIQ 826

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285
           F       KV+ +E N +   T     P +A      +
Sbjct: 827 FAI--KDGKVYVIEANPRASRT----VPFIAKAYDVPY 858


>gi|293611435|ref|ZP_06693730.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292826219|gb|EFF84589.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 646

 Score = 78.6 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 33/198 (16%), Positives = 67/198 (33%), Gaps = 14/198 (7%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD----SQHLISPPYVIK 131
           +I +      A  L   K  SK  +   GVP  P    +R  ++        I  P ++K
Sbjct: 100 QITFIGPTASAIELMGSKRLSKIAMIEAGVPCVPGYEGDRQDLEYLATQAEQIGFPIMVK 159

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSS-----SWNHGDQLLIEQYVDGIELTCGVMGDAS 186
              GG   G+ ++++   +   L  +      ++  G+ +L +  +    +   V GD  
Sbjct: 160 ASAGGGGRGMRLVQQASELFEALQTARSEAENAFGSGELILEKAVIAPRHVEIQVFGDTH 219

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRS 246
            +   +            K             +   + +++   A    +A    G    
Sbjct: 220 GNYVYLFERDCSIQRRHQK----VVEEAPCPVMTPVLRQQMGEAAVDTAKACAYVGAGTV 275

Query: 247 DFLFDPLSRKVFWLEINV 264
           +FL D      ++LE+N 
Sbjct: 276 EFLLDAS-GAFYFLEMNT 292


>gi|294624097|ref|ZP_06702843.1| acetyl-CoA carboxylase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
 gi|294666072|ref|ZP_06731332.1| acetyl-CoA carboxylase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
 gi|292601608|gb|EFF45599.1| acetyl-CoA carboxylase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
 gi|292604173|gb|EFF47564.1| acetyl-CoA carboxylase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
          Length = 455

 Score = 78.6 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 41/225 (18%), Positives = 83/225 (36%), Gaps = 27/225 (12%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+      +E     +         L  DK+ + + + + GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAERVEQSGFIFIGPKADTIRLMGDKVEAIRAMKAAGVPCVPGSGG 136

Query: 111 -----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWN 161
                I+ N         I  P +IK   GG   G+ V+  + ++   +     ++ +  
Sbjct: 137 PLGDDIVAN---TKVAREIGYPVIIKAAGGGGGRGMRVVHSEAALKAAIETTKSEAKAAF 193

Query: 162 HGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-I 219
             DQ+ +E++++    +   V+ D       +            K          PA  I
Sbjct: 194 SNDQVYMEKFLENPRHVEIQVLADGQGGAIHLGERDCSMQRRHQK-----VVEEAPAPGI 248

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             ++  E+ ++   A   IG RG    +FLF   + + +++E+N 
Sbjct: 249 TEELRNEIGKVCVDACIRIGYRGAGTFEFLF--ENGRFYFIEMNT 291


>gi|288818697|ref|YP_003433045.1| 2-oxoglutarate carboxylase small subunit [Hydrogenobacter
           thermophilus TK-6]
 gi|317374870|sp|D3DJ42|2OCS_HYDTT RecName: Full=2-oxoglutarate carboxylase small subunit; AltName:
           Full=2-oxoglutarate carboxylase beta subunit
 gi|116234990|dbj|BAF34931.1| 2-oxoglutarate carboxylase small subunit [Hydrogenobacter
           thermophilus]
 gi|288788097|dbj|BAI69844.1| 2-oxoglutarate carboxylase small subunit [Hydrogenobacter
           thermophilus TK-6]
 gi|308752285|gb|ADO45768.1| acetyl-CoA carboxylase, biotin carboxylase [Hydrogenobacter
           thermophilus TK-6]
          Length = 472

 Score = 78.6 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 52/251 (20%), Positives = 95/251 (37%), Gaps = 25/251 (9%)

Query: 32  KVSQIDVDRSVGLVLAHLKPDLAFNV----LHGNFG---EDGLVQAILELLEIPYTHSGI 84
           +   I V+     + A    DLA  V    +H  +G   E+     + E   I +     
Sbjct: 47  EAYMIGVNPLDTYLNAERIVDLALEVGAEAIHPGYGFLAENEHFARLCEEKGITFIGPHW 106

Query: 85  LASALSMDKMRSKQVVSSCGVPVCP---SILVN-RFTMDSQHLISPPYVIKPLKGGSSLG 140
               L  DK RSK+V+   GVP  P    IL +          I  P ++K   GG   G
Sbjct: 107 KVIELMGDKARSKEVMKRAGVPTVPGSDGILKDVEEAKRIAKEIGYPVLLKASAGGGGRG 166

Query: 141 IIVIKKDQSIPLDLLQS-----SSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAV 194
           I + + ++ +  +   +      ++  GD LL+E+Y++    +   V+GD   +V  +  
Sbjct: 167 IRICRNEEELVRNYENAYNEAVKAFGRGD-LLLEKYIENPKHIEFQVLGDKYGNVIHLGE 225

Query: 195 PKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
                     K        + P+  +  +  +    L   A + IG       +F+ D  
Sbjct: 226 RDCSIQRRNQKL-----VEIAPSLLLTPEQREYYGSLVVKAAKEIGYYSAGTMEFIADEK 280

Query: 254 SRKVFWLEINV 264
              ++++E+N 
Sbjct: 281 GN-LYFIEMNT 290


>gi|156742882|ref|YP_001433011.1| acetyl-CoA carboxylase, biotin carboxylase [Roseiflexus
           castenholzii DSM 13941]
 gi|156234210|gb|ABU58993.1| acetyl-CoA carboxylase, biotin carboxylase [Roseiflexus
           castenholzii DSM 13941]
          Length = 454

 Score = 78.6 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 76/221 (34%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     I    ++ +      A  +  DK   ++ +   GVP  P    
Sbjct: 77  AIHPGYGFLSENPYFAEICAEYKLKFIGPDANAIRMMGDKALGRKTMRDAGVPTVPGSRG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGDQ 165
            +      +++ H I  P ++KP  GG   G+ V + +  +         ++ +      
Sbjct: 137 ELRTLEEAVETAHQIGYPVLLKPSGGGGGRGMRVAQNEADLIKAYPTSKAEAEAAFGNSA 196

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           LL+E+Y+     +   V+ D                    +          P+  +  D+
Sbjct: 197 LLMEKYLPQVRHVEIQVLADQYGHAI-----HLGERDCSSQRRHQKIVEEAPSPAVNPDL 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              +   A    +AI        +FL DP     +++E+N 
Sbjct: 252 RARMGEAALKGVRAINYVNAGTMEFLLDP-DGNFYFIEMNT 291


>gi|157125640|ref|XP_001654405.1| carboxylase:pyruvate/acetyl-coa/propionyl-coa [Aedes aegypti]
 gi|108873521|gb|EAT37746.1| carboxylase:pyruvate/acetyl-coa/propionyl-coa [Aedes aegypti]
          Length = 704

 Score = 78.6 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 36/222 (16%), Positives = 77/222 (34%), Gaps = 20/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H  +G   E+     + +   + +      A      K  SK ++S  GVP+      
Sbjct: 107 AIHPGYGFLSENVEFAELCQQEGVIFIGPPASAIRDMGIKSTSKHIMSEAGVPIINGYHG 166

Query: 113 ---VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS-----SWNHGD 164
               +   M     I  P +IK ++GG   G+ + + +      L  +      ++    
Sbjct: 167 EDQSDERLMQEAKKIGFPLMIKAVRGGGGKGMRIAETEADFFPALQSARTESEKAFG-DS 225

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            +L+E+YV     +   V  D   +   +           ++          PA  +  +
Sbjct: 226 SMLLERYVRSPRHVEVQVFADHHGNAVYLYE-----RDCSVQRRHQKIIEEAPAPGLSEE 280

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +  ++   A  A +A+   G    +F+ D       ++E+N 
Sbjct: 281 LRVQLGEAAVRAAKAVNYVGAGTVEFILDKEDLSFHFMEMNT 322


>gi|21241301|ref|NP_640883.1| acetyl-CoA carboxylase biotin carboxylase subunit [Xanthomonas
           axonopodis pv. citri str. 306]
 gi|21106623|gb|AAM35419.1| biotin carboxylase subunit of acetyl CoA carboxylase [Xanthomonas
           axonopodis pv. citri str. 306]
          Length = 455

 Score = 78.6 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 41/225 (18%), Positives = 83/225 (36%), Gaps = 27/225 (12%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+      +E     +         L  DK+ + + + + GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAERVEQSGFIFIGPKADTIRLMGDKVEAIRAMKAAGVPCVPGSGG 136

Query: 111 -----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWN 161
                I+ N         I  P +IK   GG   G+ V+  + ++   +     ++ +  
Sbjct: 137 PLGDDIVAN---TKVAREIGYPVIIKAAGGGGGRGMRVVHSEAALKAAIETTKSEAKAAF 193

Query: 162 HGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-I 219
             DQ+ +E++++    +   V+ D       +            K          PA  I
Sbjct: 194 SNDQVYMEKFLENPRHVEIQVLADGQGGAIHLGERDCSMQRRHQK-----VVEEAPAPGI 248

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             ++  E+ ++   A   IG RG    +FLF   + + +++E+N 
Sbjct: 249 TEELRNEIGKVCVDACIRIGYRGAGTFEFLF--ENGRFYFIEMNT 291


>gi|322710501|gb|EFZ02075.1| hypothetical protein MAA_01657 [Metarhizium anisopliae ARSEF 23]
          Length = 779

 Score = 78.6 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 34/222 (15%), Positives = 75/222 (33%), Gaps = 18/222 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPSI 111
            +H  +G   E+      +    I +      A     DK  +K  + +    VP+ P  
Sbjct: 103 AIHPGYGYLSENAAFATAVRDAGITFVGPSPSAMETLGDKRSAKAHLRAHEPSVPLIPGF 162

Query: 112 LVNRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKD----QSIPLDLLQSSSWNHG 163
                           I  P ++K   GG   G+ ++++       +     +++ +   
Sbjct: 163 AGTSQEPAELERLADEIGYPVMLKASAGGGGKGMRIVRERGQLRAELETARSEAARYFGS 222

Query: 164 DQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD 222
              ++E+Y++ G  +   +MGD   +V  +            K             +   
Sbjct: 223 SDCILEKYIEQGKHIEIQIMGDGYGNVLSLGERDCSVQRRHQK----VIEEAPSPWLDDA 278

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             KE+  +A    + +        +F+FD  +   ++LE+N 
Sbjct: 279 KRKEMSNVAVTIGRLLNYENAGTVEFVFDVATGNFYFLEVNT 320


>gi|260575906|ref|ZP_05843901.1| Carbamoyl-phosphate synthase L chain ATP-binding [Rhodobacter sp.
           SW2]
 gi|259021832|gb|EEW25133.1| Carbamoyl-phosphate synthase L chain ATP-binding [Rhodobacter sp.
           SW2]
          Length = 667

 Score = 78.6 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 77/220 (35%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+ +  A LE + + +      A     DK+ SK++     V   P    
Sbjct: 77  AVHPGYGFLSENRVFAAALEAIGVVFIGPPSPAIEAMGDKITSKKIAQEANVSTVPGHMG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
            I      +     +  P +IK   GG   G+ +   D            ++++    D+
Sbjct: 137 LIADADEAVKIATKVGYPVMIKASAGGGGKGMRIAWNDAEAREGFQSSKNEAAASFGDDR 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE++V     +   V+ D+  +   +   +        K           + +     
Sbjct: 197 IFIEKFVTQPRHIEIQVLADSHGNCVYLHERECSIQRRNQK----VIEEAPSSFLDPATR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K +   A    +A+G       +F+ D   R  ++LE+N 
Sbjct: 253 KAMGEQACALARAVGYTSAGTVEFIVDDK-RNFYFLEMNT 291


>gi|229011800|ref|ZP_04168981.1| Biotin carboxylase [Bacillus mycoides DSM 2048]
 gi|228749431|gb|EEL99275.1| Biotin carboxylase [Bacillus mycoides DSM 2048]
          Length = 445

 Score = 78.6 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 81/220 (36%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       +   I +             K+ S+  + +  VPV P I  
Sbjct: 77  AIHPGYGLLSENPSFPIRCKEEGIVFIGPSEEIITKMGSKIESRIAMQAADVPVVPGITT 136

Query: 114 N----RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
           N       ++    I  P ++K   GG  +G+ +++ +Q++         ++ ++    +
Sbjct: 137 NIETAEEAIEIAKQIGYPLMLKASAGGGGIGMQLMETEQTLTKAFESNKTRAQNFFGNGE 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+Y+ D   +   ++ D   +   +   +        K             +  D  
Sbjct: 197 MYLERYIADAHHIEIQLLADTHGNTVYLWERECSVQRRNQK----VIEEAPSPFLDEDTR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K +  +A  A +A+G       +FL D      ++LE+N 
Sbjct: 253 KAMGEVAVQAAKALGYTNAGTVEFLVDDQKN-FYFLEMNT 291


>gi|119505028|ref|ZP_01627104.1| probable biotin carboxylase/biotin carboxyl carrier protein [marine
           gamma proteobacterium HTCC2080]
 gi|119459010|gb|EAW40109.1| probable biotin carboxylase/biotin carboxyl carrier protein [marine
           gamma proteobacterium HTCC2080]
          Length = 662

 Score = 78.6 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 42/219 (19%), Positives = 79/219 (36%), Gaps = 17/219 (7%)

Query: 58  LHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
           +H  +G   E+    A  E   I +      A  +  DK R+K+ +   GVP  P     
Sbjct: 80  IHPGYGFLSENSNFAAACEQANIVFIGPPNKAIEVMGDKARAKRAMLEAGVPCIPGYQDE 139

Query: 115 RFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKK----DQSIPLDLLQSSSWNHGDQL 166
              M+    +   I  P +IK   GG   G+ ++ +    + +I L   ++ +     +L
Sbjct: 140 AQDMETLLNAAENIGLPVMIKAAAGGGGRGMRLVTESPQLEDAIGLAQSEAQNAFGSSEL 199

Query: 167 LIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
           +IE+ V     +   V  D    V  +            K             +  ++ +
Sbjct: 200 IIERAVLRPRHVEVQVFADQLGHVIHLGERDCSIQRRHQK----VIEESPCPVMTPELRR 255

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +   A    +A+   G    +FL D    + ++LE+N 
Sbjct: 256 AMGEAAVNVARAVDYVGAGTVEFLVDE-DGRFYFLEMNT 293


>gi|85860899|ref|YP_463101.1| carbamoyl phosphate synthase large subunit [Syntrophus
           aciditrophicus SB]
 gi|85723990|gb|ABC78933.1| carbamoyl-phosphate synthase large chain [Syntrophus aciditrophicus
           SB]
          Length = 1069

 Score = 78.6 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 51/278 (18%), Positives = 95/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+ V  I         D +             +V  ++A  +PD   +
Sbjct: 29  SGTQACKALREEGYSVVLINSNPATIMTDPETADRTYIEPITPEAVEKIIARERPDALLS 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G  G +  V      +LE   +    + +     + D+   ++ + S G+ V  S  
Sbjct: 89  TLGGQTGLNTAVAVAESGLLERYGVEMIGASLPVIHKAEDRELFRRAMESIGLRVPRSGF 148

Query: 113 VNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI-PLDLLQSSSWNHGDQLLIE 169
                  +     I  P +++P       G  V    + +         +    + +L E
Sbjct: 149 ARTMEEVLTIAEEIGFPVIVRPSFTLGGTGSGVAYNREELVEQARAGLEASMIHEIMLEE 208

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
             +   E    VM D + +V  I   ++ D            S  V PA+ +    Y+ +
Sbjct: 209 SALGWKEYELEVMRDRADNVVIICSIENLDPMGVHT----GESITVAPAQTLTDAEYQHM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  A    + IG   G S   F   P + ++  +E+N 
Sbjct: 265 RNAAIAIMREIGVETGGSNVQFAVHPETGEMIVIEMNP 302



 Score = 46.7 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 79/220 (35%), Gaps = 12/220 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--FTMDSQHLISPPYV 129
           LE        +   +   + D+ R +++V    +    +  V      +++   I  P +
Sbjct: 649 LEAAGAKILGTSPDSIDRAEDRKRFQEIVDKLSLNQPVNATVTDVAGALEAAEHIGYPVL 708

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           ++P        + ++    S+   + ++   +    +LI+Q+++       V  DA  D 
Sbjct: 709 VRPSYVLGGRSMEIVYDADSLSQFMERALKVSPDHPILIDQFLE---DAIEVDVDAISDG 765

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           TE  V     +  E    S +S  VLP      D    ++       Q +   G+   + 
Sbjct: 766 TETVVAGIMEHIEEAGIHSGDSACVLPTMSFSEDFLGLIESQTERIAQELRVIGL--MNI 823

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
            +      ++ LE+N +   T     P ++   G    +L
Sbjct: 824 QYAVKEGILYVLEVNPRASRT----VPFVSKAIGVPLAKL 859


>gi|15238482|ref|NP_198386.1| CAC2; acetyl-CoA carboxylase/ biotin carboxylase [Arabidopsis
           thaliana]
 gi|75317871|sp|O04983|ACCC_ARATH RecName: Full=Biotin carboxylase, chloroplastic; AltName:
           Full=Acetyl-CoA carboxylase subunit A; Short=ACC; Flags:
           Precursor
 gi|1905876|gb|AAC09008.1| biotin carboxylase subunit [Arabidopsis thaliana]
 gi|1916300|gb|AAC09009.1| heteromeric acetyl-CoA carboxylase biotin carboxylase subunit
           [Arabidopsis thaliana]
 gi|3047099|gb|AAC13611.1| Arabidopsis thaliana biotin carboxylase subunit (GB:U90879)
 gi|10178099|dbj|BAB11486.1| acetyl-CoA carboxylase, biotin carboxylase [Arabidopsis thaliana]
 gi|21554097|gb|AAM63178.1| acetyl-CoA carboxylase [Arabidopsis thaliana]
 gi|23297085|gb|AAN13088.1| acetyl-CoA carboxylase [Arabidopsis thaliana]
 gi|332006573|gb|AED93956.1| biotin carboxylase [Arabidopsis thaliana]
          Length = 537

 Score = 78.6 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 80/220 (36%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
           +LH  +G   E+ L   +     I +      +  +  DK  +++ + + GVP  P    
Sbjct: 149 MLHPGYGFLSENALFVEMCRDHGINFIGPNPDSIRVMGDKATARETMKNAGVPTVPGSDG 208

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS----IPLDLLQSSSWNHGDQ 165
            +      +   + I  P +IK   GG   G+ + K+       +     ++++    D 
Sbjct: 209 LLQSTEEAVRVANEIGFPVMIKATAGGGGRGMRLAKEPGEFVKLLQQAKSEAAAAFGNDG 268

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             +E++V +   +   V+ D   +V               K             +  ++ 
Sbjct: 269 CYLEKFVQNPRHIEFQVLADKFGNVVHFGERDCSIQRRNQKLL----EEAPSPALTAELR 324

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K +   A  A  +IG  G+   +FL D      +++E+N 
Sbjct: 325 KAMGDAAVAAAASIGYIGVGTVEFLLDER-GSFYFMEMNT 363


>gi|153931241|ref|YP_001385630.1| pyruvate carboxylase [Clostridium botulinum A str. ATCC 19397]
 gi|152927285|gb|ABS32785.1| pyruvate carboxylase [Clostridium botulinum A str. ATCC 19397]
          Length = 1144

 Score = 78.6 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 36/222 (16%), Positives = 78/222 (35%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+           I +            DK++SK V    GVP  P +  
Sbjct: 80  AIHPGYGFLAENSEFARKCREAGIEFIGPTAEMMEKLGDKIKSKIVAEKAGVPTIPGVQK 139

Query: 114 ----NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP-----LDLLQSSSWNHGD 164
                +  ++       P ++K   GG   G+ +++ ++ +             ++   D
Sbjct: 140 PIKSEKEALEFARYCGYPIMLKAAAGGGGRGMRIVRTEEELISSFKSAKNEAKKAFGIDD 199

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + IE+Y++    +   ++GD   ++  +            K          PA  +P  
Sbjct: 200 -IFIEKYLENPKHIEVQILGDKHGNIVHLYERDCSIQRRHQK-----VIEFTPAFALPKK 253

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +E+   A    + +G +     +FL D      +++E+N 
Sbjct: 254 KREEICNDALKIAKTVGYKSAGTLEFLVDTTGNH-YFIEMNP 294


>gi|330867990|gb|EGH02699.1| 3-methylcrotonyl-CoA carboxylase alpha subunit [Pseudomonas
           syringae pv. aesculi str. 0893_23]
          Length = 561

 Score = 78.6 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 40/211 (18%), Positives = 74/211 (35%), Gaps = 16/211 (7%)

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD---- 119
           E+      +E   + +      A      K  +K ++   GVP+ P    +   ++    
Sbjct: 3   ENADFARAIEEAGLIFLGPPASAIDAMGSKSAAKALMDQAGVPLVPGYHGDAQDIETFRS 62

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQLLIEQYV-DG 174
           +   I  P ++K   GG   G+ V++    +   L  +           ++L+E+YV   
Sbjct: 63  AAERIGYPVLLKATAGGGGKGMKVVEHSGEMAEALASAQREALSSFGDARMLVEKYVLTP 122

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFL 233
             +   V  D       +            K          PA  +  ++ K +   A  
Sbjct: 123 RHVEIQVFADRHGHCLYLNERDCSIQRRHQK-----VVEEAPAPGLTPELRKAMGEAAVK 177

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           A QAIG  G    +FL D    + F++E+N 
Sbjct: 178 AAQAIGYVGAGTVEFLLDAR-GEFFFMEMNT 207


>gi|307308817|ref|ZP_07588505.1| Carbamoyl-phosphate synthase L chain ATP-binding [Sinorhizobium
           meliloti BL225C]
 gi|306900622|gb|EFN31234.1| Carbamoyl-phosphate synthase L chain ATP-binding [Sinorhizobium
           meliloti BL225C]
          Length = 670

 Score = 78.6 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 40/236 (16%), Positives = 81/236 (34%), Gaps = 15/236 (6%)

Query: 38  VDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSK 97
           V  ++   +     D      +G   E+      LE   + +    + A     DK+ SK
Sbjct: 65  VIENILAAIRRTGADAVHPG-YGFLSENAAFAEALEKDGVTFIGPPVRAIEAMGDKITSK 123

Query: 98  QVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153
           ++ +  GV   P  +      D        I  P +IK   GG   G+ +   ++     
Sbjct: 124 KLAAEAGVFTVPGHMGLIEDADEAARIAAEIGFPVMIKASAGGGGKGMRIAWNEREAREG 183

Query: 154 LL----QSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS 208
                 ++ S    D++ IE++V +   +   V+GD   ++  +   +        K   
Sbjct: 184 FQSSRNEAKSSFGDDRIFIEKFVTEPRHIEIQVLGDKHGNILYLGERECSIQRRNQK--- 240

Query: 209 LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
                     +     + +   A    +A+G       +F+ D   R  ++LE+N 
Sbjct: 241 -VIEEAPSPFLDEKTRRAMGEQAVALAKAVGYHSAGTVEFIVDA-GRNFYFLEMNT 294


>gi|190893854|ref|YP_001980396.1| pyruvate carboxylase [Rhizobium etli CIAT 652]
 gi|190699133|gb|ACE93218.1| pyruvate carboxylase protein [Rhizobium etli CIAT 652]
          Length = 1154

 Score = 78.6 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 77/221 (34%), Gaps = 18/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E            I +            +K+ ++ +  S GVPV P+   
Sbjct: 85  AIHPGYGLLSESPEFVDACNKAGIIFIGPKADTMRQLGNKVAARNLAISVGVPVVPATEP 144

Query: 114 NRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
               M         I  P ++K   GG   G+ VI+ +  +  ++ ++          D+
Sbjct: 145 LPDDMAEVAKMAAAIGYPVMLKASWGGGGRGMRVIRAEADLAREVTEAKREAMAAFGKDE 204

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           + +E+ V+    +   ++GD   +V  +            K          PA  +    
Sbjct: 205 VYLEKLVERARHVESQILGDTHGNVVHLFERDCSIQRRNQK-----VVERAPAPYLSEAQ 259

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +E+   +     A    G    ++L D  + K +++E+N 
Sbjct: 260 RQELAAYSLKIAAATNYIGAGTVEYLMDADTGKFYFIEVNP 300


>gi|158338511|ref|YP_001519688.1| carbamoyl phosphate synthase large subunit [Acaryochloris marina
           MBIC11017]
 gi|158308752|gb|ABW30369.1| carbamoyl-phosphate synthase, large subunit [Acaryochloris marina
           MBIC11017]
          Length = 1080

 Score = 78.6 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 55/279 (19%), Positives = 104/279 (37%), Gaps = 36/279 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVDRS------------VGLVLAHLKPDLAFN 56
           SG     AL D G++V  I         D + +            V  V+A  +PD    
Sbjct: 29  SGTQACKALRDEGYEVVLINSNPATIMTDPETAERIYIEPLTPELVEKVIAKERPDALLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G    +  V      +L+   +    + + A  ++ D+   K+ +   G+ VCPS  
Sbjct: 89  TMGGQTALNLAVTLAKTGVLDQYNVELIGAKLPAIEMAEDRKLFKEAMERIGLGVCPSGL 148

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
              +      +Q + + P +++P       G  +    +            +   Q+LIE
Sbjct: 149 AETMAESQQIAQEIGTYPLIVRPAFTLGGTGGGIAYNQEEFEAIAQSGLDASPVSQILIE 208

Query: 170 QYVDG-IELTCGVMGDASLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPAK-IPLDIYKE 226
           + + G  E    VM D + +V  I   ++ D           +S  V PA+ +    Y+ 
Sbjct: 209 KSLIGWKEYELEVMRDLADNVVIICSIENIDPMGVHT----GDSITVAPAQTLTDKEYQR 264

Query: 227 VQRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           ++  +    + IG   G S   F  +P+  +V  +E+N 
Sbjct: 265 LRDASIKIIREIGVETGGSNIQFAVNPIDGEVIVIEMNP 303



 Score = 59.4 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 29/228 (12%), Positives = 86/228 (37%), Gaps = 13/228 (5%)

Query: 68  VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTMDSQHLIS 125
           +Q   +        +   +  ++ D+ R +Q++ +  +   P+ +   N+   +    I 
Sbjct: 656 LQGKPD--GPKIWGTSPDSIDIAEDRERFEQILHTLNITQPPNGIARSNQEATEVAQRIQ 713

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGD 184
            P V++P        + ++  D+ +   +  +        +LI++++ D IE+    + D
Sbjct: 714 YPVVVRPSYVLGGRAMEIVYSDEELERYMTFAVQVEPDHPILIDKFLEDAIEVDVDAIAD 773

Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244
            + +V    + +    +    +S  ++  +    +  +    ++  +    Q +   G+ 
Sbjct: 774 RTGEVVIGGIMEHIEQAGV--HSGDSACAIPTLSLGEETLATIREWSKQLAQQLNVIGL- 830

Query: 245 RSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
             +  F     +V+ LE N +   T     P ++   G    ++   +
Sbjct: 831 -MNLQFAVQGEQVYILEANPRASRT----VPFVSKAIGLPLAQVAARL 873


>gi|92113679|ref|YP_573607.1| acetyl-CoA carboxylase [Chromohalobacter salexigens DSM 3043]
 gi|91796769|gb|ABE58908.1| Carbamoyl-phosphate synthase L chain, ATP-binding protein
           [Chromohalobacter salexigens DSM 3043]
          Length = 471

 Score = 78.6 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 38/238 (15%), Positives = 77/238 (32%), Gaps = 24/238 (10%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRS 96
           R +  +      D     +H  +G   E+     I E   + +        A   DK  +
Sbjct: 63  RRIVDLARETGCD----AIHPGYGFLSENADFARICEDAGLAFVGPDASVIARMGDKTAA 118

Query: 97  KQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152
           +  +   GVPV P     +      +     I  P ++K   GG   GI        +  
Sbjct: 119 RAAMRDAGVPVTPGSDGNLETCAEALALADTIGYPVMLKATSGGGGRGIRRCDTPAQLEQ 178

Query: 153 DL-----LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYS 207
                    + ++   D  + +  V+   +   ++ D+  +V  +            K  
Sbjct: 179 AWERVISEATKAFGSADVFMEKCVVEPHHIEVQILADSVGNVIHLFERDCSIQRRNQKL- 237

Query: 208 SLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
                 + P  ++  +    V  +A  A  A+G       +FL      +V+++E+N 
Sbjct: 238 ----IEIAPSPQLTPEQRAYVGEMAVRAASAVGYENAGTVEFLV--KGNEVYFMEMNT 289


>gi|315091957|gb|EFT63933.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium
           acnes HL110PA4]
          Length = 1068

 Score = 78.6 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 43/297 (14%), Positives = 106/297 (35%), Gaps = 36/297 (12%)

Query: 24  SALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLV------ 68
            A++ AG++   +         D   S  L    L  +   NV+      DG++      
Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSISDKLYFEPLTFEDVMNVID-LEQPDGVIVQFGGQ 637

Query: 69  -----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ-- 121
                   L    +P   + +     + D+   + +++  G+P  P              
Sbjct: 638 TAINLAGPLSAAGVPILGTQVADLDRAEDREGFESLLAELGIPQAPGGTARSSEEAFAVA 697

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
             +  P +++P        + ++   + +   +  +   +    +L+++Y++G+E     
Sbjct: 698 EELGYPVLVRPSYVIGGRAMAIVTSAEELKRYMRDAVHASPDKPVLVDRYLNGLECEVDA 757

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGC 240
           + D     T++ +P    +       S +S  V P  ++   +   +  +     + +  
Sbjct: 758 ICDG----TDVLIPGIMEHIERAGVHSGDSRAVYPPQRMSQQVADRIIEVTTKLAKGLKT 813

Query: 241 RGISRSDFLF--DPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +GI    F+   DP + +  V+ +E N +   T     P ++   G S  E+   ++
Sbjct: 814 KGILNIQFVVADDPATGEETVYVIEANPRASRT----VPFLSKVTGVSMAEVATRII 866



 Score = 72.5 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 45/268 (16%), Positives = 100/268 (37%), Gaps = 30/268 (11%)

Query: 25  ALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNVLHGNFG 63
           AL++ G++V  ++        DR V                +L   +PD     L G  G
Sbjct: 36  ALKEEGYEVILVNSNPATIMTDRDVADKVYIEPITLEFVSSILRRERPDAIVPTLGGQTG 95

Query: 64  EDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
            +   +     IL+ L I    + + A   + D+   KQ++   G PV  S +V+     
Sbjct: 96  LNMATELATSGILDELGIELLGTKLSAIEKAEDRDLFKQLMDELGQPVPASEVVHTVDEA 155

Query: 120 SQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IE 176
            +  + I  P +++P       G  +   +  +   + +    +   + L+EQ + G  E
Sbjct: 156 VKVGNTIGYPLIVRPAYTLGGTGGGMCCDEAELVRIVGKGLELSPVSECLVEQSIAGYKE 215

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +   +M D + +   + V   + +     ++  +        +    ++ ++  +    +
Sbjct: 216 IEYEMMRDGADNT--MVVCTMENFDPVGVHTGDSIVFAPTQTLTDVEHEMLRDASIEIVR 273

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +G  G        DP S + + +E+N 
Sbjct: 274 VLGIEGGCNVQLALDPNSFQYYVIEVNP 301


>gi|229085425|ref|ZP_04217666.1| Biotin carboxylase [Bacillus cereus Rock3-44]
 gi|228697901|gb|EEL50645.1| Biotin carboxylase [Bacillus cereus Rock3-44]
          Length = 445

 Score = 78.6 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 80/220 (36%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       +   I +        A    K+ S+  +    VPV P I  
Sbjct: 77  AIHPGYGLLSENPSFAIRCKEEGIVFIGPSEEIIAKMGSKIESRLAMQEANVPVVPGITT 136

Query: 114 N----RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
           N       ++    I  P ++K   GG  +G+ +++ +Q++         ++ ++    +
Sbjct: 137 NIETAEEAIEIAKQIGYPLMLKASAGGGGIGMQLMETEQTLTKAFESNKTRAQNFFGNGE 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+Y+ D   +   ++ D   +   +   +        K             +     
Sbjct: 197 MYLERYIADAHHIEIQLLADTHGNTVYLWERECSVQRRNQK----VIEEAPSPFLDEATR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K +  +A  A +A+G       +FL D      ++LE+N 
Sbjct: 253 KAMGEVAVQAAKALGYTNAGTVEFLVDDQKN-FYFLEMNT 291


>gi|153934619|ref|YP_001389036.1| pyruvate carboxylase [Clostridium botulinum A str. Hall]
 gi|152930533|gb|ABS36032.1| pyruvate carboxylase [Clostridium botulinum A str. Hall]
          Length = 1144

 Score = 78.6 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 36/222 (16%), Positives = 78/222 (35%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+           I +            DK++SK V    GVP  P +  
Sbjct: 80  AIHPGYGFLAENSEFARKCREAGIEFIGPTAEMMEKLGDKIKSKIVAEKAGVPTIPGVQK 139

Query: 114 ----NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP-----LDLLQSSSWNHGD 164
                +  ++       P ++K   GG   G+ +++ ++ +             ++   D
Sbjct: 140 PIKSEKEALEFARYCGYPIMLKAAAGGGGRGMRIVRTEEELISSFKSAKNEAKKAFGIDD 199

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + IE+Y++    +   ++GD   ++  +            K          PA  +P  
Sbjct: 200 -IFIEKYLENPKHIEVQILGDKHGNIVHLYERDCSIQRRHQK-----VIEFTPAFALPKK 253

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +E+   A    + +G +     +FL D      +++E+N 
Sbjct: 254 KREEICNDALKIAKTVGYKSAGTLEFLVDTTGNH-YFIEMNP 294


>gi|114762647|ref|ZP_01442081.1| propionyl-CoA carboxylase, alpha subunit [Pelagibaca bermudensis
           HTCC2601]
 gi|114544557|gb|EAU47563.1| propionyl-CoA carboxylase, alpha subunit [Roseovarius sp. HTCC2601]
          Length = 666

 Score = 78.6 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 41/221 (18%), Positives = 75/221 (33%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      L+   + +      A     DK+ SK++    GV   P  + 
Sbjct: 77  AVHPGYGFLSENPKFADALDAAGVAFIGPPKRAIEDMGDKITSKKIAKEAGVNTVPGYMG 136

Query: 114 NRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGD 164
                D        I  P +IK   GG   G+ +   DQ             +SS+   D
Sbjct: 137 LIEDADEAVKISGEIGYPVMIKASAGGGGKGMRIAWNDQEAREGFQSSKNEAASSFG-DD 195

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           ++ IE++V     +   V+ DA  +   +   +        K             +  + 
Sbjct: 196 RIFIEKFVTQPRHIEIQVLCDAHGNGLWLNERECSIQRRNQK----VVEEAPSPFLDPET 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            K +   A    +A+G       +F+ D      ++LE+N 
Sbjct: 252 RKAMGEQAVALAKAVGYTSAGTVEFIVDGEKN-FYFLEMNT 291


>gi|319947606|ref|ZP_08021836.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus australis
           ATCC 700641]
 gi|319746294|gb|EFV98557.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus australis
           ATCC 700641]
          Length = 455

 Score = 78.2 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 77/220 (35%), Gaps = 16/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  FG   E+     + E + I +         +  DK+ ++  +   GVPV P    
Sbjct: 77  AIHPGFGFLSENSKFATMCEEVGIKFIGPSGSVMDMMGDKINARAQMIKAGVPVIPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
            +      ++    I  P ++K   GG   GI  +++ + +         ++ +      
Sbjct: 137 EVHTAEEALEVADRIGYPVMLKASAGGGGKGIRKVERAEDLVPAFESASTEAKAAFGNGA 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+ +     +   ++ D    V  +            K             I   I 
Sbjct: 197 MYLERVIYPARHIEVQILADQFGHVVHLGERDCSLQRNNQKVL----EESPSVAIGKTIR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            ++   A  A +++G       +FL+D    + +++E+N 
Sbjct: 253 DQIGSAAVRAAESVGYENAGTIEFLYDEGKGEFYFMEMNT 292


>gi|222081214|ref|YP_002540577.1| acetyl-CoA carboxylase biotin carboxylase subunit [Agrobacterium
           radiobacter K84]
 gi|221725893|gb|ACM28982.1| acetyl-CoA carboxylase, biotin carboxylase [Agrobacterium
           radiobacter K84]
          Length = 461

 Score = 78.2 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 81/221 (36%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+G     +E   + +      A     DK+ ++QV +  GVP  P    
Sbjct: 78  AVHPGYGFLSENGDFADAVEAAGMVFIGPSGDAIRTLGDKVAARQVAAKAGVPTVPGSDG 137

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK----DQSIPLDLLQSSSWNHGDQ 165
            +            I  P +IK   GG   GI ++      +Q  PL   ++ +      
Sbjct: 138 RVAGLDEARTLAATIGFPVMIKAAAGGGGRGIRIVADIAELEQQFPLASAEALAAFGDGG 197

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDI 223
           L +E+ +     +   + GD    V              L+          PA + P ++
Sbjct: 198 LYMEKVITRARHVEVQIFGDGQNFV------HFFERECSLQRRRQKVWEEAPAFLLPANV 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +   A    + +G RG    ++L+D  +   +++E+N 
Sbjct: 252 RERLCGSAVALAREVGYRGAGTVEYLYDDETGDFYFIEVNT 292


>gi|188582423|ref|YP_001925868.1| carbamoyl-phosphate synthase L chain ATP-binding [Methylobacterium
           populi BJ001]
 gi|179345921|gb|ACB81333.1| Carbamoyl-phosphate synthase L chain ATP-binding [Methylobacterium
           populi BJ001]
          Length = 667

 Score = 78.2 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 73/220 (33%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H  +G   E       L    I +      A A   DK+ SK+  +   V   P  L 
Sbjct: 77  AVHPGYGFLSEREAFPKALAEAGIVFIGPNPGAIAAMGDKIESKKAAAEAKVSTVPGFLG 136

Query: 113 ---VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
                   +     I  P +IK   GG   G+ + +    +     ++ S        D+
Sbjct: 137 VIESPEHAVKIADEIGYPVMIKASAGGGGKGMRIAESADEVAEGFARAKSEASSSFGDDR 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+++ D   +   V+GD   +V  +   +        K             +  +  
Sbjct: 197 VFVEKFITDPRHIEIQVIGDKHGNVIYLGERECSIQRRNQK----VIEEAPSPLLDEETR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +++   A    +A+        +F      +  ++LE+N 
Sbjct: 253 RKMGEQAVALAKAVNYDSAGTVEF-VAGQDKSFYFLEMNT 291


>gi|332293409|ref|YP_004432018.1| protein of unknown function DUF201 [Krokinobacter diaphorus
           4H-3-7-5]
 gi|332171495|gb|AEE20750.1| protein of unknown function DUF201 [Krokinobacter diaphorus
           4H-3-7-5]
          Length = 388

 Score = 78.2 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 47/290 (16%), Positives = 107/290 (36%), Gaps = 54/290 (18%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62
           ++ GG       S+          ++ G +   ID D +             F ++ G  
Sbjct: 6   LIFGG-------SILQRSLILK-CKNRGLRTIVIDPDPNALCKKEAT----VFEIVDGQD 53

Query: 63  GED-----------GLVQA-----------ILELLEIPYTHSGILASALSMDKMRSKQVV 100
            E            G++ A           + E L++P+       + +S +K   K++ 
Sbjct: 54  YEKTLAIARRESICGVITAASDKPLVMMARVAETLKLPFISE--ETAIISTNKFLMKELF 111

Query: 101 SSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160
               +P    + +       ++L S P +IKPL    S G+++      + ++ + +  +
Sbjct: 112 LKNNLPCAKGVEL---AAAKEYLGSFPVIIKPLDNSGSRGVVLCTTMDDLRVNFVDTFKY 168

Query: 161 NHGDQLLIEQYVDGIELTC-GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI 219
              ++LL+E++++G E +  G+  + +  V      ++  + Y ++       H  PA +
Sbjct: 169 TKKNKLLVEEFIEGKEYSIEGLHFNGNHKVIAYTEKETTPFPYNVELG-----HKQPANL 223

Query: 220 PLDIYKEVQRLAFL---AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
             DI  E+  L      A   + C   +         + +++ +E    P
Sbjct: 224 SDDIKLEISDLLCKIGRAFNFVNCASHTEI----KIQNNQIYIIE--TSP 267


>gi|307320354|ref|ZP_07599772.1| Carbamoyl-phosphate synthase L chain ATP-binding [Sinorhizobium
           meliloti AK83]
 gi|306894076|gb|EFN24844.1| Carbamoyl-phosphate synthase L chain ATP-binding [Sinorhizobium
           meliloti AK83]
          Length = 670

 Score = 78.2 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 40/236 (16%), Positives = 81/236 (34%), Gaps = 15/236 (6%)

Query: 38  VDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSK 97
           V  ++   +     D      +G   E+      LE   + +    + A     DK+ SK
Sbjct: 65  VIENILAAIRRTGADAVHPG-YGFLSENAAFAEALEKDGVTFIGPPVRAIEAMGDKITSK 123

Query: 98  QVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153
           ++ +  GV   P  +      D        I  P +IK   GG   G+ +   ++     
Sbjct: 124 KLAAEAGVFTVPGHMGLIEDADEAARIAAEIGFPVMIKASAGGGGKGMRIAWNEREAREG 183

Query: 154 LL----QSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS 208
                 ++ S    D++ IE++V +   +   V+GD   ++  +   +        K   
Sbjct: 184 FQSSRNEAKSSFGDDRIFIEKFVTEPRHIEIQVLGDKHGNILYLGERECSIQRRNQK--- 240

Query: 209 LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
                     +     + +   A    +A+G       +F+ D   R  ++LE+N 
Sbjct: 241 -VIEEAPSPFLDEKTRRAMGEQAVALAKAVGYHSAGTVEFIVDA-GRNFYFLEMNT 294


>gi|257869385|ref|ZP_05649038.1| carbamoyl-phosphate synthase [Enterococcus gallinarum EG2]
 gi|257803549|gb|EEV32371.1| carbamoyl-phosphate synthase [Enterococcus gallinarum EG2]
          Length = 1060

 Score = 78.2 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 50/296 (16%), Positives = 109/296 (36%), Gaps = 34/296 (11%)

Query: 25  ALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNVLHGNFG 63
           AL + G++V  ++        D+ +                +L   +PD     L G  G
Sbjct: 36  ALREEGYEVVLVNSNPATIMTDKEIADKVYIEPITFEFVSRILRKERPDAILPTLGGQTG 95

Query: 64  EDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFT 117
            +  ++     IL+ +EI    + + A   + D+   KQ++     P+  S +V+     
Sbjct: 96  LNMAMELANSGILDEMEIELLGTKLAAIDQAEDRDLFKQLMEELNQPIPESEIVSTVEEA 155

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IE 176
           +     I  P +++P       G  +   ++ + +        +   Q LIE+ + G  E
Sbjct: 156 VTFATKIGYPIIVRPAFTLGGTGGGMCNNEEELRVIAENGLKLSPVTQCLIERSIAGYKE 215

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +   VM D++ +   I V   + +     ++  +        +    Y+ ++  +    +
Sbjct: 216 IEYEVMRDSADNA--IVVCNMENFDPVGIHTGDSIVFAPSQTLSDHEYQMLRDASLKIIR 273

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           A+   G        DP S   + +E+N  P ++  S     +   GY   +L   +
Sbjct: 274 ALKIEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAKI 325



 Score = 67.5 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 26/213 (12%), Positives = 71/213 (33%), Gaps = 12/213 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ--HLISPPYV 129
           L    +    + I     + ++   +Q + +  +P  P       T      + I  P +
Sbjct: 646 LVAAGVSILGTSIEDLDRAENRDLFEQALQALAIPQPPGDTATNTTEAVAIANRIGYPVL 705

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           ++P        + +++    +   +  +   +    +L+++Y+ G E     + D +  +
Sbjct: 706 VRPSYVLGGRAMEIVENQADLEDYMKHAVKASPEHPVLVDRYLVGKECEVDAICDGTTVL 765

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
               +   +       +S  +     P  +       ++         + C G+    F+
Sbjct: 766 IPGIMEHIERAGV---HSGDSMAVYPPQNLSEATIATIEDYTKRLALGLNCVGMMNIQFV 822

Query: 250 FDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277
                 KV+ +E+N       P ++ V+  P  
Sbjct: 823 IHEE--KVYVIEVNPRASRTVPFLSKVTEIPMA 853


>gi|218264997|ref|ZP_03478621.1| hypothetical protein PRABACTJOHN_04331 [Parabacteroides johnsonii
           DSM 18315]
 gi|218221665|gb|EEC94315.1| hypothetical protein PRABACTJOHN_04331 [Parabacteroides johnsonii
           DSM 18315]
          Length = 528

 Score = 78.2 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 46/243 (18%), Positives = 92/243 (37%), Gaps = 22/243 (9%)

Query: 34  SQIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALS 90
           S +D+++ +  V    K D     +H  +G   E+       +   I +           
Sbjct: 82  SYLDIEK-IIWVAKQHKVD----AIHPGYGFLSENADFARRCKEEGIIFIGPSAETMEAM 136

Query: 91  MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH----LISPPYVIKPLKGGSSLGIIVIKK 146
            DK+ +++ + + GVPV P        +         I  P ++K   GG   G+ +I  
Sbjct: 137 GDKISARKRMIAAGVPVVPGTQQPLQDVGEARRICREIGFPVMLKASMGGGGKGMRLIHC 196

Query: 147 DQSIPLDLLQSSSWNH----GDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYS 201
           ++ +      + S +      D + +E++V+G   +   ++GD   +V  +   +     
Sbjct: 197 EEEVEEAYNAARSESLSSFGDDTVYLEKFVEGPHHIEFQILGDNHGNVIHLCERECSVQR 256

Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
              K             I  D+ +E+   A  A +A+   G    +FL D   R  ++LE
Sbjct: 257 RNQKI----VEESPSPFITPDLRQEMGEKAVAAAKAVDYSGAGTIEFLVDKH-RNFYFLE 311

Query: 262 INV 264
           +N 
Sbjct: 312 MNT 314


>gi|297801062|ref|XP_002868415.1| hypothetical protein ARALYDRAFT_493601 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297314251|gb|EFH44674.1| hypothetical protein ARALYDRAFT_493601 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 537

 Score = 78.2 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 80/220 (36%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
           +LH  +G   E+ L   +     I +      +  +  DK  +++ + + GVP  P    
Sbjct: 149 MLHPGYGFLSENALFVEMCRDHGINFIGPNPDSIRVMGDKATARETMKNAGVPTVPGSDG 208

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS----IPLDLLQSSSWNHGDQ 165
            +      +   + I  P +IK   GG   G+ + K+       +     ++++    D 
Sbjct: 209 LLQSTEEAVRVANEIGFPVMIKATAGGGGRGMRLAKEPGEFVKLLQQAKSEAAAAFGNDG 268

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             +E++V +   +   V+ D   +V               K             +  ++ 
Sbjct: 269 CYLEKFVQNPRHIEFQVLADKFGNVVHFGERDCSIQRRNQKLL----EEAPSPALTAELR 324

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K +   A  A  +IG  G+   +FL D      +++E+N 
Sbjct: 325 KAMGDAAVAAAASIGYIGVGTVEFLLDER-GSFYFMEMNT 363


>gi|256847340|ref|ZP_05552786.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus
           coleohominis 101-4-CHN]
 gi|256716004|gb|EEU30979.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus
           coleohominis 101-4-CHN]
          Length = 1058

 Score = 78.2 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 34/232 (14%), Positives = 84/232 (36%), Gaps = 19/232 (8%)

Query: 68  VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQHLIS 125
           + A L+   I    + +     + D+    QV+    +     +        + +   I 
Sbjct: 642 LAAGLDQHGIKILGTSVQDLDAAEDRRVFDQVIKDLQLKQPVGLTATTHEGVIAAATKIG 701

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            P +++P        + ++  +  +   L  +++      +LI+ Y++G E     + D 
Sbjct: 702 YPVLVRPSYVLGGKAMEIVYNETELEQYLQDNANVAADHPILIDAYLEGRECEVDAICDG 761

Query: 186 S---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCR 241
           +   L      + ++  +S        +S  V P +    DI +++         A+ C 
Sbjct: 762 TDVLLPGIMEHIERAGVHS-------GDSMAVYPPQSFDQDIKQQIVDATKKLCLALKCI 814

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           GI    F+    + + + LE+N +   T     P ++   G    ++   ++
Sbjct: 815 GIMNIQFIIH--NHEAYVLEVNPRASRT----VPFLSKITGIEMAQVATRVI 860



 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 51/286 (17%), Positives = 101/286 (35%), Gaps = 33/286 (11%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQIDVD---------------------RSVGLV 45
           G ++E + S   G     AL++ G++   ++ +                      SV  +
Sbjct: 21  GQAAEFDYS---GTQACLALKEEGYETVLVNSNPATIMTDNEIADHVYIEPLTVESVSRI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +    PD     L G  G +  V      +L+ L I    + + +   + D+ R K+++ 
Sbjct: 78  IRQEYPDAILPTLGGQIGLNLAVALAKTGLLDELGIQLLGTKLDSIDQAEDRERFKELMQ 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
               PV  S  V+     +   H I  P +++P       G  +   D  + +       
Sbjct: 138 QLHEPVPASQTVSTVDEALAFAHQIGYPVIVRPAFTMGGTGGGMCHDDDEMKIIAANGLD 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   Q LIE+ + G  E+   VM DA  D   +   ++  +     ++  +        
Sbjct: 198 LSPVTQCLIEKSIAGYKEIEFEVMRDAKDDAMVVCCMEN--FDPVGIHTGDSIVFAPNQT 255

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +    Y+ ++  A    +A+   G        DP S     +E+N 
Sbjct: 256 LSDREYQMLRDCALKLIRALKIEGGCNVQLALDPNSYHYDVIEVNP 301


>gi|229490729|ref|ZP_04384567.1| acetyl-/propionyl-coenzyme A carboxylase alpha chain [Rhodococcus
           erythropolis SK121]
 gi|229322549|gb|EEN88332.1| acetyl-/propionyl-coenzyme A carboxylase alpha chain [Rhodococcus
           erythropolis SK121]
          Length = 679

 Score = 78.2 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 34/197 (17%), Positives = 73/197 (37%), Gaps = 16/197 (8%)

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSI----LVNRFTMDSQHLISPPYVIKPLK 134
           +      A  +  DK+ +K  V++  VPV P I    L +   + +   I  P ++KP  
Sbjct: 107 FLGPSEHAIEVMGDKITAKNAVAAFDVPVVPGIARPNLTDEELIAAAEDIGYPVLVKPSA 166

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQLLIEQYV-DGIELTCGVMGDASLDV 189
           GG   G+ +++   ++   L  +          D L +E++V     +   V+ D   +V
Sbjct: 167 GGGGKGMRLVEDPANLAEALRSARREAASSFGDDTLFLERFVLRPRHIEVQVLADQHGNV 226

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY-KEVQRLAFLAHQAIGCRGISRSDF 248
             +   +        K          P+ +   +    +   A    +++   G    +F
Sbjct: 227 VHLGERECSLQRRHQK-----VIEEAPSPLLDQVTRDRIGAAACNTARSVDYTGAGTVEF 281

Query: 249 LFDPLS-RKVFWLEINV 264
           +       + F++E+N 
Sbjct: 282 IVSADKPDEFFFMEMNT 298


>gi|209559197|ref|YP_002285669.1| carbamoyl phosphate synthase large subunit [Streptococcus pyogenes
           NZ131]
 gi|226700940|sp|B5XKW2|CARB_STRPZ RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|209540398|gb|ACI60974.1| Carbamoyl-phosphate synthase large chain [Streptococcus pyogenes
           NZ131]
          Length = 1058

 Score = 78.2 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 38/292 (13%), Positives = 100/292 (34%), Gaps = 32/292 (10%)

Query: 24  SALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH-----G---NFGEDG 66
            A++ AG++   +         D   S  L    L  +   NV+      G    FG   
Sbjct: 579 KAIQKAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIDLEQPKGVIVQFGGQT 638

Query: 67  LV---QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQ 121
            +   QA+ E   +    + +     + D+   ++ +   G+P             +++ 
Sbjct: 639 AINLAQALSE-AGVTILGTQVEDLDRAEDRDLFEKALKELGIPQPQGQTATNEEEALEAA 697

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
             I  P +++P        + +++  + +   +  +   +    +L++ Y+ G E     
Sbjct: 698 KKIGFPVLVRPSYVLGGRAMEIVENKEDLREYIRTAVKASPEHPILVDSYIFGKECEVDA 757

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241
           + D    +    +   +       +S  +     P ++   I + +          + C 
Sbjct: 758 ISDGKSVLIPGIMEHIERAGV---HSGDSMAVYPPQQLSKQIQETIAEYTKRLAIGLNCI 814

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           G+    F+    + +V+ +E+N +   T     P ++   G    ++   ++
Sbjct: 815 GMMNVQFVI--KNDQVYVIEVNPRASRT----VPFLSKVPGIPMAQIATKLI 860



 Score = 69.4 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 50/296 (16%), Positives = 107/296 (36%), Gaps = 34/296 (11%)

Query: 25  ALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNVLHGNFG 63
           AL++ G+KV  ++        D+ +                ++   +PD     L G  G
Sbjct: 36  ALKEEGYKVILVNSNPATIMTDKEIADKVYIEPLTLEFVNRIIRKERPDAILPTLGGQTG 95

Query: 64  EDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFT 117
            +  +      IL+ LEI    + + A   + D+   KQ++     P+  S +V      
Sbjct: 96  LNMAMALSKAGILDDLEIELLGTKLSAIDQAEDRDLFKQLMQELDQPIPESTIVKTVDEA 155

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IE 176
           +     I  P +++P       G  +   ++ +          +   Q LIE+ + G  E
Sbjct: 156 VTFARDIGYPVIVRPAFTLGGTGGGICSSEEELCEITENGLKLSPVTQCLIERSIAGFKE 215

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +   VM D++ +   + V   + +     ++  +        +     + ++  +    +
Sbjct: 216 IEYEVMRDSADNA--LVVCNMENFDPVGIHTGDSIVFAPTQTLSDIENQMLRDASLKIIR 273

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           A+   G        DP S K + +E+N  P ++  S     +   GY   +L   +
Sbjct: 274 ALKIEGGCNVQLALDPYSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAKI 325


>gi|209551410|ref|YP_002283327.1| pyruvate carboxylase [Rhizobium leguminosarum bv. trifolii WSM2304]
 gi|209537166|gb|ACI57101.1| pyruvate carboxylase [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 1154

 Score = 78.2 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 76/221 (34%), Gaps = 18/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E            I +            +K+ ++ +  S GVPV P+   
Sbjct: 85  AIHPGYGLLSESPEFVDACNKAGIIFIGPRADTMRQLGNKVAARNLAISVGVPVVPATEP 144

Query: 114 NRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
               M         I  P ++K   GG   G+  I+  + +  ++ ++          D+
Sbjct: 145 LPDDMAVVAKMAKEIGYPVMLKASWGGGGRGMRAIRDPKDLAREVTEAKREAMAAFGKDE 204

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           + +E+ V+    +   V+GD   +V  +            K          PA  +    
Sbjct: 205 VYLEKLVERARHVESQVLGDTHGNVVHLFERDCSIQRRNQK-----VVERAPAPYLSEAQ 259

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +E+   +     A    G    ++L D  + K +++E+N 
Sbjct: 260 RQELAAYSLKIAAATNYVGAGTVEYLMDADTGKFYFIEVNP 300


>gi|170288181|ref|YP_001738419.1| carbamoyl-phosphate synthase, large subunit [Thermotoga sp. RQ2]
 gi|226700943|sp|B1L8T8|CARB_THESQ RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|170175684|gb|ACB08736.1| carbamoyl-phosphate synthase, large subunit [Thermotoga sp. RQ2]
          Length = 1099

 Score = 78.2 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 55/289 (19%), Positives = 109/289 (37%), Gaps = 38/289 (13%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI---------DVDRS------------VGLV 45
           G ++E + S   G     AL+ AG++V  +         D + S            +  +
Sbjct: 21  GQAAEFDYS---GTQALKALKSAGYEVIIVNSNSATIMTDPEFSDAVYIEPLTVEFLEKI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   +PD     L G    +  V    + IL+   +    + + +   + D+   K+ + 
Sbjct: 78  IEKERPDALLPTLGGQTALNLAVELAERGILDKYGVQLIGAKLDSIKKAEDRELFKETME 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G+ V  S LVN     +++      P +I+P       G  +   ++ +   + +   
Sbjct: 138 KAGLEVLRSRLVNNLADALETAREFGYPVIIRPSFTLGGTGGGIAFNEEELRDIVTKGLI 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVT-EIAVPKSDFYSYELKYSSLNSTHVLPA 217
            +    +LIE+ V G  E    V+ D + +     ++   D           +S  V PA
Sbjct: 198 ESPVHTVLIEESVLGWKEYELEVVRDGAGNFIVVCSIENLDPMGIHT----GDSITVAPA 253

Query: 218 K-IPLDIYKEVQRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           + +    Y+ ++  A     AIG   G S   F  DP + ++  +E+N 
Sbjct: 254 QTLTDVEYQRMRDAAHKVIDAIGIETGGSNIQFAVDPETGRMVVIEMNP 302



 Score = 55.1 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 27/189 (14%), Positives = 74/189 (39%), Gaps = 10/189 (5%)

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGS 137
             +   +  ++ D+ +  +++   G+   P    +     +     +  P +++P     
Sbjct: 649 IGTSFESIEIAEDREKFAKLLKQIGLKCPPFGTASSVEEALRVAENLGYPVLVRPSYVLG 708

Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPK 196
              + ++   Q + + + +++  + G  +LI++++ D IEL   V+ D       IA   
Sbjct: 709 GRAMAIVDTPQELEMYVKEAAVVSPGYPVLIDKFLEDAIELDVDVVSDG--KYVWIAGLM 766

Query: 197 SDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255
                 E    S +S  V  P  +   + +E++   +   +A+   G++           
Sbjct: 767 EQI--EEAGVHSGDSACVLPPVSLSEKLVEEIEETVYKLVKALKVVGVANI--QLAVKDE 822

Query: 256 KVFWLEINV 264
           +++ +E N 
Sbjct: 823 EIYIIEANP 831


>gi|327399335|ref|YP_004340204.1| carbamoyl-phosphate synthase large subunit [Hippea maritima DSM
           10411]
 gi|327181964|gb|AEA34145.1| carbamoyl-phosphate synthase, large subunit [Hippea maritima DSM
           10411]
          Length = 1068

 Score = 78.2 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 47/278 (16%), Positives = 100/278 (35%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G+++  ++ +                       +  ++A  +PD    
Sbjct: 29  SGTQACKALKNEGYEIVLVNSNPATIMTDPMLADKTYIEPITVEFLEKIIAKERPDALLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G    +  +      +L+   +    +       + D+   KQ ++  G+ V  S +
Sbjct: 89  TLGGQTALNAAMDLHKAGVLDRYGVELIGANAQTIERAEDRELFKQAMNEIGLKVPASGV 148

Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +  +   +  + I  P +I+P       G  V    +     +      +  +++LIEQ
Sbjct: 149 AHSLSEAWEIVNAIHFPVIIRPSFTLGGTGAGVAYNKEEFEEVVKWGLEQSPVNEVLIEQ 208

Query: 171 YVDG-IELTCGVMGDASLDV-TEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            V G  E    VM D   +V    ++   D           +S  + PA+ +    Y+ +
Sbjct: 209 SVLGWKEFELEVMRDKKDNVFIICSIENFDPMGIHT----GDSITIAPAQTLTDKEYQIL 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  A    + +G   G S   F  +P + +   +E+N 
Sbjct: 265 RDAAIDIIRKVGVETGGSNIQFAVNPENGEFVVIEMNP 302



 Score = 59.8 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 35/261 (13%), Positives = 100/261 (38%), Gaps = 27/261 (10%)

Query: 26  LEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ------- 69
           L + G++   +         D D S  L    L  +   N++     E  +VQ       
Sbjct: 579 LRNEGYESIMVNCNPETVSTDYDISDRLYFEPLVFEDVMNIIENEKPEGVIVQFGGQTPL 638

Query: 70  --AI-LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLI 124
             ++ L+   +    +   +  ++ D+   ++++    +    S + +     ++    +
Sbjct: 639 KLSLPLKNAGVKILGTDPKSIDIAEDRELFRELIKKLDLLQPESGIAHSKEEAIEVATRV 698

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMG 183
             P +++P        +++I  ++ +   + ++        LL+++++ D IE+    + 
Sbjct: 699 GYPVLVRPSYVLGGRAMMIIFNEEQLRQYVDEAVQVTGERPLLVDKFLEDAIEVDVDAVS 758

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D    V    +   +       +S  ++  + P  +  +I  E++R   L  + +  +G+
Sbjct: 759 DGEDTVVAAVMEHIEAAGV---HSGDSACSIPPRTLKKEIVSEIKRQTRLLAKELNVKGL 815

Query: 244 SRSDFLFDPLSRKVFWLEINV 264
               F     + +++ LE+N 
Sbjct: 816 INIQFAV--KNDRIYILEVNP 834


>gi|258652381|ref|YP_003201537.1| carbamoyl-phosphate synthase L chain ATP- binding [Nakamurella
           multipartita DSM 44233]
 gi|258555606|gb|ACV78548.1| Carbamoyl-phosphate synthase L chain ATP- binding [Nakamurella
           multipartita DSM 44233]
          Length = 1831

 Score = 78.2 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 45/235 (19%), Positives = 82/235 (34%), Gaps = 14/235 (5%)

Query: 39  DRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQ 98
              +   L   K D A+ V  G   ED     + E L + +      A     DK+ +K 
Sbjct: 70  HAVLRKALIESKADAAW-VGWGFVAEDPTFAELCEELGVTFIGPPPEAMRRLGDKVEAKY 128

Query: 99  VVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154
           +  +  VPV P     +      ++    I  P ++K   GG   GI ++     +   +
Sbjct: 129 MAEATNVPVAPWSGGPVETMEEALEHAKSIGYPMILKARSGGGGRGIRMVFDPAELEEAI 188

Query: 155 L----QSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209
                ++    +   + +E  V  G  +   V+ D   +     V          K    
Sbjct: 189 ERTQSEAQKAFNDHVIFMEHLVQGGRHIEVQVIADNYGNAWAPGVRDCSIQRRNQKLIEE 248

Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +     PA +  +   ++   A     A+G RG    +FL+ P  +   +LE+N 
Sbjct: 249 S---FSPA-LTKEQAADLAARAIDLVLAVGYRGAGTVEFLYQPEKKTFAFLEVNT 299


>gi|13474975|ref|NP_106535.1| hypothetical protein mll5963 [Mesorhizobium loti MAFF303099]
 gi|14025722|dbj|BAB52321.1| mll5963 [Mesorhizobium loti MAFF303099]
          Length = 408

 Score = 78.2 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 43/267 (16%), Positives = 97/267 (36%), Gaps = 28/267 (10%)

Query: 12  REVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLA----HLKPDLA----FNVLHGNFG 63
           R ++LS+  A    L+    +  ++D D    L+          D+A    F  L  +  
Sbjct: 29  RPITLSTDPAQYDYLKARKLEAIRVDTDSIEALIHECSGLRGSYDIAGITGFTALDESLY 88

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTMDSQ 121
               +  + +   +P       +     DK   +Q +++ GVP+    L         + 
Sbjct: 89  --SRIGKLCQYFSLP--GPNPESIEQCCDKFTQRQFLAAAGVPIPVYRLAVNEAEVESAA 144

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH---GDQLLIEQYVDGIELT 178
             I  P ++KP  G  S G+ + +    +           H     ++L+E++  G   +
Sbjct: 145 AEIGLPVILKPAAGSGSSGVRLCRNVDELAEHTTYLLGEKHLWSSPRILVEEFAQGPFYS 204

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             +MG+  + +      ++  +     +    +TH  PA +  + Y+ +  ++     A+
Sbjct: 205 AEIMGNEVVGI------EATDFGPPPHFVIRGATH--PAPLTDEEYERIADVSLSCLPAL 256

Query: 239 GCR-GISRSDFLFDPLSRKVFWLEINV 264
           G   G +  +  +         +E+N 
Sbjct: 257 GLGWGPANIELRWTKHG--PVIIEVNP 281


>gi|225631205|ref|ZP_03787902.1| propionyl-CoA carboxylase, alpha subunit [Wolbachia endosymbiont of
           Muscidifurax uniraptor]
 gi|225591096|gb|EEH12281.1| propionyl-CoA carboxylase, alpha subunit [Wolbachia endosymbiont of
           Muscidifurax uniraptor]
          Length = 691

 Score = 78.2 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 31/220 (14%), Positives = 75/220 (34%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      L+   I +         ++ +K+ +K+     GV V P  + 
Sbjct: 81  AVHPGYGFLAENPDFPRALQKHNIDFIGPSAETIEVTANKITAKEAAKKAGVNVVPGYMG 140

Query: 114 N----RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
                         I  P ++K   GG   G+ ++   + I L       ++        
Sbjct: 141 KISDVAHAAQVAKEIGFPVMLKAASGGGGKGMRIVNSKKEIELAFTSATNEAEKSFKDGS 200

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+Y++    +   ++ D   ++  +   +        K             I  ++ 
Sbjct: 201 IFIEKYIELPRHIEIQIIADKYGNIVCLGERECSIQRNNQKII----EETPSPFISEEVR 256

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +++        + +G       +F+ D   +  ++LE+N 
Sbjct: 257 QKMYVQCVSLAKQVGYFSAGTVEFVVDK-DQNFYFLEVNT 295


>gi|294084609|ref|YP_003551367.1| acetyl-CoA carboxylase [Candidatus Puniceispirillum marinum
           IMCC1322]
 gi|292664182|gb|ADE39283.1| acetyl-CoA carboxylase [Candidatus Puniceispirillum marinum
           IMCC1322]
          Length = 446

 Score = 78.2 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 35/214 (16%), Positives = 77/214 (35%), Gaps = 15/214 (7%)

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G   E+     I+    + +            DK+ +K    + G+P+ P       T+D
Sbjct: 83  GFLSENADFAEIVAAHGLTFIGPEPHHIRAMGDKVEAKITAEAAGLPLVPGSPGAVHTID 142

Query: 120 SQHLI----SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQLLIEQY 171
               +      P ++K   GG   G+ V +   ++      + +        D + +E+Y
Sbjct: 143 DARKVAADVGYPLLVKAASGGGGRGMKVAETADNLAEAFSAARAEAKAAFGDDTVYLERY 202

Query: 172 VDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
           +     +   V+ DA  +V  +   +        K             +  D   ++  +
Sbjct: 203 LGLPRHIEVQVIADAHGNVVHLGERECSIQRRHQKLF----EEAPSPALTADERHKIGTV 258

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           A  A + +G  G+   +FL+   + + F++E+N 
Sbjct: 259 AAEATRKLGYLGVGTMEFLY--ENGEFFFIEMNT 290


>gi|328463870|gb|EGF35401.1| D-alanine--D-alanine ligase [Lactobacillus rhamnosus MTCC 5462]
          Length = 92

 Score = 78.2 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 38/71 (53%), Gaps = 2/71 (2%)

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAG 282
           +++ ++ ++      +G +   R DF      + V+ +E N  PGMTP+S+ P+ A   G
Sbjct: 2   VHQAMKDVSLQTMDVLGLQNYGRIDFF--ANDKGVWVIEANNLPGMTPLSLLPQEAEADG 59

Query: 283 YSFRELLLWMV 293
             + +L++ ++
Sbjct: 60  VEYGDLVMDII 70


>gi|91215446|ref|ZP_01252417.1| Acetyl-CoA carboxylase, biotin carboxylase [Psychroflexus torquis
           ATCC 700755]
 gi|91186398|gb|EAS72770.1| Acetyl-CoA carboxylase, biotin carboxylase [Psychroflexus torquis
           ATCC 700755]
          Length = 453

 Score = 78.2 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 82/220 (37%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---S 110
            +H  +G   E+     I E  +I +  +         DK  +K  + + GVP  P    
Sbjct: 77  AIHPGYGFLSENAAFSRICEEHDIKFIGATPDMIDKMGDKASAKSTMKAAGVPCVPGSEG 136

Query: 111 ILVN-RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGDQ 165
           IL +      +   I  P ++K   GG   G+  +K +  +         ++ +    D 
Sbjct: 137 ILKDFEDCKKTAKKIGYPVMLKATAGGGGKGMRAVKTEDKLEGAWESARQEAKAGFGNDD 196

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+ ++    +   ++GD +     ++           K     +  V    +  ++ 
Sbjct: 197 MYMEKLIEEPRHIEIQIVGDQTGRACHLSERDCSIQRRHQK----LTEEVPSPFMTDELR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +++   A  A + I   G    +FL D   R  +++E+N 
Sbjct: 253 EKMGTAAVKAAEYIKYEGAGTIEFLVDKH-RNFYFMEMNT 291


>gi|262376321|ref|ZP_06069551.1| acetyl-CoA carboxylase, biotin carboxylase [Acinetobacter lwoffii
           SH145]
 gi|262308922|gb|EEY90055.1| acetyl-CoA carboxylase, biotin carboxylase [Acinetobacter lwoffii
           SH145]
          Length = 664

 Score = 78.2 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 41/221 (18%), Positives = 78/221 (35%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       +   I +    + A      K  SK ++   GVP+ P    
Sbjct: 77  AIHPGYGFLSENDQFALACQDNNIVFIGPPVDAILAMGLKATSKALMEKAGVPLTPGYHG 136

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
                D        I  P +IK   GG   G+ ++++ +     L    S        + 
Sbjct: 137 TNQDADFLKQQADNIGYPVLIKASAGGGGKGMRLVERSEDFLSSLASCKSEARSSFGNED 196

Query: 166 LLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDI 223
           +LIE+Y +    +   V GD   +               ++          PA K+P D 
Sbjct: 197 VLIERYVIQPRHIEVQVFGDTHGNYV-----HLFERDCSVQRRHQKVLEEAPAPKMPEDK 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +++ A  A +A+   G    +F+        +++E+N 
Sbjct: 252 LEAMRQAAIDAARAVNYVGAGTVEFIV-EQDGTAYFMEMNT 291


>gi|15891359|ref|NP_357031.1| propionyl-coenzyme A carboxylase, alpha polypeptide [Agrobacterium
           tumefaciens str. C58]
 gi|15159746|gb|AAK89816.1| propionyl-coenzyme A carboxylase, alpha polypeptide [Agrobacterium
           tumefaciens str. C58]
          Length = 667

 Score = 78.2 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 42/240 (17%), Positives = 80/240 (33%), Gaps = 16/240 (6%)

Query: 34  SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDK 93
           S I +D+ +   +     D      +G   E+      LE   + +    + A     DK
Sbjct: 59  SYIVIDK-ILEAIQKTGADAVHPG-YGFLSENAAFAQALEKAGVVFIGPPVGAIEAMGDK 116

Query: 94  MRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQS 149
           + SK++ +  GV   P  +      D        I  P +IK   GG   G+ +   +  
Sbjct: 117 ITSKKLAAKAGVSTVPGHMGLIEDADEAVKIASQIGYPVMIKASAGGGGKGMRIAFNEAE 176

Query: 150 IPLDLL----QSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYEL 204
                     ++ S    D++ IE++V     +   V+GD    +  +   +        
Sbjct: 177 AREGFQSSKNEAKSSFGDDRIFIEKFVTQPRHIEIQVLGDKHGTILYLGERECSIQRRNQ 236

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K             +       +   A    +A+G       +F+ D   R  ++LE+N 
Sbjct: 237 K----VIEEAPSPFLDEATRHAMGEQAVALARAVGYHSAGTVEFIVDG-ERNFYFLEMNT 291


>gi|78044886|ref|YP_360817.1| acetyl-CoA carboxylase, biotin carboxylase [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|77997001|gb|ABB15900.1| acetyl-CoA carboxylase, biotin carboxylase [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 449

 Score = 78.2 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 80/221 (36%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+      +E   + +      A  L  DK  ++Q + + GVPV P    
Sbjct: 77  AIHPGYGFLAENAAFAEAVEASGLTFIGPPPRAIELMGDKATARQTMIAAGVPVVPGSKK 136

Query: 111 ILVN-RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS-----SWNHGD 164
           ++ N    +     I  P ++K   GG   G+ + + D  +    + +      ++    
Sbjct: 137 VVENVEEAVAIAREIGYPVMLKASAGGGGKGMRIAQNDDDLAKAFITARTEAQNAFG-NP 195

Query: 165 QLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            + +E+YV+    +   V+GD   +   +            K             +   +
Sbjct: 196 DVYLEKYVEEPRHIEIQVLGDKHGNYVYLFERDCSIQRRHQK----LIEEAPSPFVDPIL 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +++   A  A +A+        +FL D      +++E+N 
Sbjct: 252 REKMGEAALKACRAVDYYSAGTVEFLVDRNKN-FYFMEMNT 291


>gi|73667157|ref|YP_303173.1| carbamoyl-phosphate synthase subunit L [Ehrlichia canis str. Jake]
 gi|72394298|gb|AAZ68575.1| Biotin/lipoyl attachment:Carbamoyl-phosphate synthase L chain,
           ATP-binding:Carbamoyl-phosphate synthetase large chain,
           N- terminal:Biotincarboxylase,C-terminal [Ehrlichia
           canis str. Jake]
          Length = 656

 Score = 78.2 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 33/220 (15%), Positives = 84/220 (38%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      L+   I +      +  +  DK+ SK++  S  V + P  + 
Sbjct: 77  AVHPGYGFLSENAEFPEKLQEYNIQFIGPSPSSIRMMADKITSKKIAESAQVNIIPGYMG 136

Query: 114 NRFTMDSQH----LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
              ++D        I  P +IK   GG   G+ ++K  + +         +++      +
Sbjct: 137 IVDSVDEAKSIARSIGFPVMIKATAGGGGKGMRIVKSCEEMDQAFTSATNEAAKNFKDGR 196

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+Y++    +   ++ D   ++  +   +     +  K             +  +  
Sbjct: 197 IFIEKYIELPRHIEIQIIADKYGNIVCLGERECSIQRHNQK----VIEETPSPFLNEETR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +++ +      + +G       +F+ D  +R+ ++LE+N 
Sbjct: 253 QKMYQQCVNLAKKVGYYSAGTIEFIVD-QNRQFYFLEMNT 291


>gi|73662537|ref|YP_301318.1| acetyl-CoA carboxylase biotin carboxylase subunit [Staphylococcus
           saprophyticus subsp. saprophyticus ATCC 15305]
 gi|72495052|dbj|BAE18373.1| biotin carboxylase subunit of acetyl-CoA carboxylase
           [Staphylococcus saprophyticus subsp. saprophyticus ATCC
           15305]
          Length = 452

 Score = 78.2 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 33/216 (15%), Positives = 77/216 (35%), Gaps = 15/216 (6%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVN 114
           +G   E+G    + E  ++ +      +      K  +K+ +    VPV P     +   
Sbjct: 81  YGFLAENGDFAELCEACQLKFIGPSYESIQKMGIKDVAKEEMKRAEVPVVPGSEGLVQDI 140

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGDQLLIE 169
                    I  P +IK   GG   GI V + ++ +            +++ +    L E
Sbjct: 141 NEAKKIATEIGYPVIIKATAGGGGKGIRVARDEKELETGFKMTQQEAETAFGNNGLYL-E 199

Query: 170 QYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           ++++    +   +MGD+  +V  +            +             +  +  +E+ 
Sbjct: 200 KFIENFRHIEIQIMGDSFGNVVHLGERDCTI----QRRMQKLVEEAPSPILTEEKRQEMG 255

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             A  A +A+        +F++D  +   +++E+N 
Sbjct: 256 NAAVRAAKAVNYENAGTIEFIYDLDTNDFYFMEMNT 291


>gi|15967031|ref|NP_387384.1| pyruvate carboxylase [Sinorhizobium meliloti 1021]
 gi|15076304|emb|CAC47857.1| Pyruvate carboxylase [Sinorhizobium meliloti 1021]
          Length = 1152

 Score = 78.2 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 76/221 (34%), Gaps = 18/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E            I +            +K+ ++ +  S GVPV P+   
Sbjct: 85  AIHPGYGLLSESPEFAEACAANGITFIGPKPETMRQLGNKVAARNLAISIGVPVVPATEP 144

Query: 114 NRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSWNHGDQ 165
                +        I  P ++K   GG   G+  I+  + +         ++ +    D+
Sbjct: 145 LPDDPEEIKRLAEEIGYPVMLKASWGGGGRGMRAIRDPKDLIREVTEAKREAKAAFGKDE 204

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           + +E+ V+    +   ++GD   +V  +            K          PA  +    
Sbjct: 205 VYLEKLVERARHVESQILGDTHGNVVHLFERDCSIQRRNQK-----VVERAPAPYLNDAQ 259

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +E+   +    +A    G    ++L D  + K +++E+N 
Sbjct: 260 RQELADYSLKIARATNYIGAGTVEYLMDSDTGKFYFIEVNP 300


>gi|307302497|ref|ZP_07582254.1| pyruvate carboxylase [Sinorhizobium meliloti BL225C]
 gi|307316173|ref|ZP_07595617.1| pyruvate carboxylase [Sinorhizobium meliloti AK83]
 gi|306898013|gb|EFN28755.1| pyruvate carboxylase [Sinorhizobium meliloti AK83]
 gi|306903167|gb|EFN33757.1| pyruvate carboxylase [Sinorhizobium meliloti BL225C]
          Length = 1152

 Score = 78.2 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 76/221 (34%), Gaps = 18/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E            I +            +K+ ++ +  S GVPV P+   
Sbjct: 85  AIHPGYGLLSESPEFAEACAANGITFIGPKPETMRQLGNKVAARNLAISIGVPVVPATEP 144

Query: 114 NRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSWNHGDQ 165
                +        I  P ++K   GG   G+  I+  + +         ++ +    D+
Sbjct: 145 LPDDPEEIKRLAEEIGYPVMLKASWGGGGRGMRAIRDPKDLIREVTEAKREAKAAFGKDE 204

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           + +E+ V+    +   ++GD   +V  +            K          PA  +    
Sbjct: 205 VYLEKLVERARHVESQILGDTHGNVVHLFERDCSIQRRNQK-----VVERAPAPYLNDAQ 259

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +E+   +    +A    G    ++L D  + K +++E+N 
Sbjct: 260 RQELADYSLKIARATNYIGAGTVEYLMDSDTGKFYFIEVNP 300


>gi|297621104|ref|YP_003709241.1| Biotin carboxylase [Waddlia chondrophila WSU 86-1044]
 gi|297376405|gb|ADI38235.1| Biotin carboxylase [Waddlia chondrophila WSU 86-1044]
          Length = 457

 Score = 78.2 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 71/220 (32%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+    +I E   + +        A   DK R+K V    G PV P    
Sbjct: 76  AIHPGYGFLSENHNFASICESCGLEFIGPSPETIAHLGDKSRAKAVAKKAGCPVIPGSDG 135

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSWNHGDQ 165
            +      ++    +  P  IK + GG   GI +   +            ++       +
Sbjct: 136 VVSTIEQALEEVKEMGFPVFIKAVAGGGGKGIRISFSEDEFKKQFSAARAEAEVSFGNPE 195

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+ +     +   ++GD   +   +            K             +   + 
Sbjct: 196 VYLEKMIMTPRHIEVQIVGDKHGNYVHLGERDCTIQRRRQK----LIEEAPSPLVSPKLR 251

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K +   A    + +G   +   +FL D      +++E+N 
Sbjct: 252 KRMGAAAIAIAKEVGYNSVGTVEFLLDK-DHHFYFMEVNT 290


>gi|149914388|ref|ZP_01902919.1| propionyl-CoA carboxylase, alpha subunit [Roseobacter sp. AzwK-3b]
 gi|149811907|gb|EDM71740.1| propionyl-CoA carboxylase, alpha subunit [Roseobacter sp. AzwK-3b]
          Length = 666

 Score = 78.2 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 75/220 (34%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+    A LE   + +      A     DK+ SK++    GV   P ++ 
Sbjct: 77  AVHPGYGFLSENPKFAAALEAEGVAFIGPPKGAIEAMGDKITSKKIAQEAGVSTVPGVMG 136

Query: 114 NRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
                D        I  P +IK   GG   G+ +   D+           +++S    D+
Sbjct: 137 LIADADEAVTISQQIGYPVMIKASAGGGGKGMRIAWTDEEAREGFESSKNEAASSFGDDR 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE++V     +   V+ D   +   +   +        K             +     
Sbjct: 197 IFIEKFVTQPRHIEIQVLCDTHGNGVYLGERECSIQRRNQK----VIEEAPSPFLDEATR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K +   +     A+G       +F+ D   R  ++LE+N 
Sbjct: 253 KAMGEQSLKLSHAVGYASAGTVEFIVDG-DRNFYFLEMNT 291


>gi|315222164|ref|ZP_07864073.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Streptococcus
           anginosus F0211]
 gi|315188790|gb|EFU22496.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Streptococcus
           anginosus F0211]
          Length = 455

 Score = 78.2 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 78/220 (35%), Gaps = 16/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  FG   E+     + E + I +         L  DK+ ++  +    VPV P    
Sbjct: 77  AIHPGFGFLSENSKFATMCEEVGIKFIGPSGAVMDLMGDKINARAQMIKANVPVIPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
            +  +   +     I  P ++K   GG   GI  ++K + +         ++ +      
Sbjct: 137 EVHTSDEALAIAEKIGYPVMLKASAGGGGKGIRKVEKAEDLVAAFESASSEAKAAFGNGA 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+ +     +   ++ D    V  +            K             I   + 
Sbjct: 197 MYMERVIYPARHIEVQILADQHGHVVHLGERDCSLQRNNQKVL----EESPSVAIGKTLR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +++   A  A Q++G       +FLF+   R+ +++E+N 
Sbjct: 253 RKIGEAAVRAAQSVGYENAGTIEFLFNEGKREFYFMEMNT 292


>gi|82750808|ref|YP_416549.1| carbamoyl phosphate synthase large subunit [Staphylococcus aureus
           RF122]
 gi|123549035|sp|Q2YXG5|CARB_STAAB RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|82656339|emb|CAI80756.1| carbamoyl-phosphate synthase small chain [Staphylococcus aureus
           RF122]
          Length = 1057

 Score = 78.2 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 49/297 (16%), Positives = 113/297 (38%), Gaps = 36/297 (12%)

Query: 25  ALEDAGFKVSQID---------------------VDRSVGLVLAHLKPDLAFNVLHGNFG 63
           AL++ G++V  ++                         +  ++   +PD     L G  G
Sbjct: 36  ALKEEGYRVILVNSNPATIMTDKEIADKVYIEPLTHDFIARIIRKEQPDALLPTLGGQTG 95

Query: 64  EDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFT 117
            +  +Q     +L+   +    + + +   + D+   + +++   VPV  S +VN     
Sbjct: 96  LNMAIQLHESGVLQDNNVQLLGTELTSIQQAEDREMFRTLMNYLNVPVPESDIVNTVEQA 155

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IE 176
              +  +  P +++P       G  +   D+ +   +     ++   Q L+E+ + G  E
Sbjct: 156 FKFKEQVGYPLIVRPAFTMGGTGGGICHNDEELHEIVSNGLHYSPATQCLLEKSIAGFKE 215

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAH 235
           +   VM D + +   I V   +     +   + +S  V P++ +    Y+ ++ ++    
Sbjct: 216 IEYEVMRDKNDNA--IVVCNMENID-PVGIHTGDSIVVAPSQTLSDVEYQMLRDVSLKVI 272

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +A+G  G        DP S   + +E+N  P ++  S     +   GY   +L   +
Sbjct: 273 RALGIEGGCNVQLALDPHSFDYYIIEVN--PRVSRSS--ALASKATGYPIAKLAAKI 325



 Score = 71.7 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 26/210 (12%), Positives = 71/210 (33%), Gaps = 14/210 (6%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPL 133
            +    + +     + D+   + ++    VP             + +   I  P V++P 
Sbjct: 650 GVKILGTSLENLNRAEDRKEFEALLRKINVPQPQGKTATSPEEALANAAEIGYPVVVRPS 709

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
                  + ++  D+ +   + Q+   +    +L+++Y+ G E+    + D    +    
Sbjct: 710 YVLGGRAMEIVDNDKELENYMTQAVKASPEHPVLVDRYLTGKEIEVDAICDGETVIIPGI 769

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
           +   +           +S  V P + +  D    ++       + +   G+    F+   
Sbjct: 770 MEHIERAGVHS----GDSIAVYPPQTLTEDELTTLEDYTIKLAKGLNIIGLINIQFVIAH 825

Query: 253 LSRKVFWLEIN-----VQPGMTPVSIFPEM 277
               V+ LE+N       P ++ ++  P  
Sbjct: 826 DG--VYVLEVNPRSSRTVPFLSKITDIPMA 853


>gi|224539728|ref|ZP_03680267.1| hypothetical protein BACCELL_04637 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224518651|gb|EEF87756.1| hypothetical protein BACCELL_04637 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 388

 Score = 78.2 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 46/255 (18%), Positives = 86/255 (33%), Gaps = 36/255 (14%)

Query: 31  FKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
           ++V  +    ++  V+   +PD+    +     E         L +       ++ SA +
Sbjct: 45  YEVFSMLDGDALERVVRKHQPDIIVPEIEAIRTE--------RLYDFEKEGIQVVPSARA 96

Query: 91  MD-----KMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYVIKPLKGGSSLGIIV 143
           ++     K          G+                +   I  P V+KPL   S  G  +
Sbjct: 97  VNFTMNRKAIRDLAAQELGLKTAKYFYAKTLDELKAASEKIGFPCVVKPLMSSSGKGQSL 156

Query: 144 IKKDQSIPLDLLQSSSWNHGD--QLLIEQYVDGIE----LTCGVMGDASLDVTEIA-VPK 196
           +K    +        + + GD  +L+IE+++        LT       +L    I  V K
Sbjct: 157 VKSADELEHAWEYGCNGSRGDIKELIIEEFIKFDSEITLLTVTQKNGPTLFCPPIGHVQK 216

Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256
              Y               PA I     KE Q +A    +A+   G+   +F     +  
Sbjct: 217 GGDY----------RESFQPAHIDPAHLKEAQEMAEKVTRALTGAGLWGVEFFLSHENG- 265

Query: 257 VFWLEINVQP---GM 268
           V++ E++ +P   GM
Sbjct: 266 VYFSELSPRPHDTGM 280


>gi|83942680|ref|ZP_00955141.1| methylcrotonyl-CoA carboxylase, alpha subunit [Sulfitobacter sp.
           EE-36]
 gi|83846773|gb|EAP84649.1| methylcrotonyl-CoA carboxylase, alpha subunit [Sulfitobacter sp.
           EE-36]
          Length = 644

 Score = 78.2 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 42/226 (18%), Positives = 79/226 (34%), Gaps = 25/226 (11%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      +E   + +      A      K  +K ++   GVPV P    
Sbjct: 77  AIHPGYGFLSENPDFVDAVEAAGLVFIGPSAKAIRAMGLKDAAKALMVEAGVPVVPGYHG 136

Query: 114 NRFT----MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS-----SWNHGD 164
                         I  P +IK + GG   G+ +++        L  +      ++ + D
Sbjct: 137 ADQDDALLAAEADKIGYPVLIKAVAGGGGKGMRLVEAADGFQAALESARSEAKTAFGNAD 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            +L+E++V     +   V GD    V              L+          PA  +  +
Sbjct: 197 -VLVEKFVTKPRHIEVQVFGDGKKAV------HLFERDCSLQRRHQKVIEEAPAPGMTPE 249

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR----KVFWLEINV 264
           + + + + A  A +AIG  G    +F+ D          F++E+N 
Sbjct: 250 MREAMGQAAVTAAEAIGYAGAGTIEFIVDGSGGLQTDGFFFMEMNT 295


>gi|83953919|ref|ZP_00962640.1| methylcrotonyl-CoA carboxylase, alpha subunit [Sulfitobacter sp.
           NAS-14.1]
 gi|83841864|gb|EAP81033.1| methylcrotonyl-CoA carboxylase, alpha subunit [Sulfitobacter sp.
           NAS-14.1]
          Length = 644

 Score = 78.2 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 42/226 (18%), Positives = 79/226 (34%), Gaps = 25/226 (11%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      +E   + +      A      K  +K ++   GVPV P    
Sbjct: 77  AIHPGYGFLSENPDFVDAVEAAGLVFIGPSAKAIRAMGLKDAAKALMVEAGVPVVPGYHG 136

Query: 114 NRFT----MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS-----SWNHGD 164
                         I  P +IK + GG   G+ +++        L  +      ++ + D
Sbjct: 137 ADQDDALLAAEADKIGYPVLIKAVAGGGGKGMRLVEAADGFQAALESARSEAKTAFGNAD 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            +L+E++V     +   V GD    V              L+          PA  +  +
Sbjct: 197 -VLVEKFVTKPRHIEVQVFGDGKKAV------HLFERDCSLQRRHQKVIEEAPAPGMTPE 249

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR----KVFWLEINV 264
           + + + + A  A +AIG  G    +F+ D          F++E+N 
Sbjct: 250 MREAMGQAAVTAAEAIGYAGAGTIEFIVDGSGGLQTDGFFFMEMNT 295


>gi|90426002|ref|YP_534372.1| allophanate hydrolase subunit 2 [Rhodopseudomonas palustris BisB18]
 gi|90108016|gb|ABD90053.1| Allophanate hydrolase subunit 2 [Rhodopseudomonas palustris BisB18]
          Length = 1183

 Score = 78.2 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 30/220 (13%), Positives = 77/220 (35%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      L    I +             K +++++     VP+ P   +
Sbjct: 77  AVHPGYGFLSENRGFAERLASHGIVFIGPRPEHLDAFGLKHKARELAQHSNVPLLPGSGL 136

Query: 114 NRFTMDS---QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ----SSSWNHGDQL 166
                ++      I  P ++K   GG  +G+ +     ++          + +     ++
Sbjct: 137 LETIDEAMREAERIGFPLMLKSTAGGGGIGMQLCHDADTLRERFATVQRTAKASFGDARV 196

Query: 167 LIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIY 224
            +E++V +   +   + GD    V  +           L+  +       PA  +  ++ 
Sbjct: 197 YLERFVAEARHIEVQIFGDGQGKVIALGE-----RDCSLQRRNQKVIEETPAPGLSDELR 251

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             + R A    +++  +     +F++D      ++LE+N 
Sbjct: 252 TRLHRAAVALGESVAYQSAGTVEFIYDVAREDFYFLEVNT 291


>gi|300813584|ref|ZP_07093915.1| carbamoyl-phosphate synthase, large subunit [Peptoniphilus sp. oral
           taxon 836 str. F0141]
 gi|300512332|gb|EFK39501.1| carbamoyl-phosphate synthase, large subunit [Peptoniphilus sp. oral
           taxon 836 str. F0141]
          Length = 1067

 Score = 78.2 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 28/226 (12%), Positives = 79/226 (34%), Gaps = 13/226 (5%)

Query: 71  ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--QHLISPPY 128
            L+   I    +       + D+ R +++++S  +       V+         + +  P 
Sbjct: 644 FLDSKGIKILGTDFDNIDKAEDRERFEELLNSLNINRPKGGGVSSVEEGIKLANKLKYPL 703

Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD 188
           +++P       G+ +   +  +   L  +   +  + +LI++Y+ G E+    + D    
Sbjct: 704 LVRPSYVLGGKGMEITHDEDQLKKYLKAAFKEDSKNPVLIDKYLLGREIEVDAICDGQDI 763

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           +    +   +           +S  + PA  +     +++        + +   G+    
Sbjct: 764 LIPGIMEHLERAGVHS----GDSISIYPADKLSKKSKEKILDYTKKIAKGLKALGMINIQ 819

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           F+       ++ +E+N +   T     P ++  +G    EL    +
Sbjct: 820 FI--EYMDDIYIIEVNPRASRT----VPYISKVSGIPIVELATRAI 859



 Score = 55.9 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 40/246 (16%), Positives = 88/246 (35%), Gaps = 14/246 (5%)

Query: 28  DAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSG 83
                +  I +D  +  ++   KPD     + G  G +  ++     IL+   I    + 
Sbjct: 60  ADKIYIEPITIDF-IEKIIKKEKPDSLLAAMGGQTGLNMAMELDKMGILKKYNIEVIGTD 118

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--QHLISPPYVIKPLKGGSSLGI 141
           I A     D+   +Q +     P+  S +V            I  P V++P       G 
Sbjct: 119 IDAIKKGEDRDIFRQTMKKINQPLVESEIVTSLEEGKRLAEKIGFPLVVRPAYTLGGTGG 178

Query: 142 IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASL-DVTEIAVPKSDF 199
                ++ +   L      +   Q+L+E+ + G +E+   V+ D +   +    +   D 
Sbjct: 179 GFANNEEELEEILKHGLKISPVSQVLLEKSIKGYMEIEFEVIRDGAGNSLIICDMENVDP 238

Query: 200 YSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
                     +S  V P + +  ++  ++++ +      +G +G        +P +   +
Sbjct: 239 VGVHT----GDSIVVAPCQSLKKEVLDKLKKASIDIVNEVGVKGACNVQLALNPKTYDYY 294

Query: 259 WLEINV 264
            +EIN 
Sbjct: 295 VIEINP 300


>gi|289191983|ref|YP_003457924.1| phosphoribosylglycinamide formyltransferase 2 [Methanocaldococcus
           sp. FS406-22]
 gi|288938433|gb|ADC69188.1| phosphoribosylglycinamide formyltransferase 2 [Methanocaldococcus
           sp. FS406-22]
          Length = 389

 Score = 78.2 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 38/248 (15%), Positives = 96/248 (38%), Gaps = 22/248 (8%)

Query: 31  FKVSQIDVDR--SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
            K   ID+    ++  ++   +PD     +      D L+ A  E   +        A+ 
Sbjct: 53  HKSYVIDMKDYDALMAIIEREEPDYIVPEIEAINT-DALIDAEKEGYNVV---PTAEATK 108

Query: 89  LSMDKMRSKQVVSS-CGVPVCPSILVNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVIK 145
           ++M++   +++ +   G+        +      D+   +  P V+KP+   S  G  V++
Sbjct: 109 ITMNRELIRRLAAEKLGLRTAKYAFADSLEELRDAVEKLGLPCVVKPIMSSSGKGQSVVR 168

Query: 146 KDQSIPLD--LLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYE 203
            ++ I     + +  +   G+++++E++++  +    ++   + + T+   P        
Sbjct: 169 SEEDIEKAWKIAKEGARGIGNRVIVEEFIN-FDYEITLLTARTAEGTKFCEPIGHIQI-- 225

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
                       P  +  ++ K+ Q +A     A+G  GI   +        +V + E++
Sbjct: 226 ---DGDYHESWQPHDMSDELKKKAQDIAKKVTDALGGYGIFGVELFV--KGDEVIFSEVS 280

Query: 264 VQP---GM 268
            +P   GM
Sbjct: 281 PRPHDTGM 288


>gi|182678301|ref|YP_001832447.1| carbamoyl-phosphate synthase L chain ATP-binding [Beijerinckia
           indica subsp. indica ATCC 9039]
 gi|182634184|gb|ACB94958.1| Carbamoyl-phosphate synthase L chain ATP-binding [Beijerinckia
           indica subsp. indica ATCC 9039]
          Length = 668

 Score = 78.2 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 76/220 (34%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E       L    I +      A     DK++SK+   + GV V P  L 
Sbjct: 77  AVHPGYGFLSERAAFPEALAAKGIVFIGPNPKAIEAMGDKIQSKKYAQAAGVSVVPGYLG 136

Query: 114 NRFTMDSQHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPL----DLLQSSSWNHGDQ 165
              + D        I  P +IK   GG   G+ +      +         ++ S    D+
Sbjct: 137 EILSADEAARIADDIGYPVMIKASAGGGGKGMRIAHARDEVVEGFTRARSEAKSSFGDDR 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+++ D   +   V+GD   +V  +   +        K             +     
Sbjct: 197 VFIEKFIVDPRHIEIQVLGDKHGNVIHLGERECSIQRRNQK----VIEEAPSPLLDTATR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +++   A    +A+G       +F      ++ ++LE+N 
Sbjct: 253 EKMGAEAVALAKAVGYDSAGTVEF-VCGQDKQFYFLEMNT 291


>gi|126650982|ref|ZP_01723193.1| acetyl-CoA carboxylase [Bacillus sp. B14905]
 gi|126592183|gb|EAZ86232.1| acetyl-CoA carboxylase [Bacillus sp. B14905]
          Length = 452

 Score = 78.2 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 28/220 (12%), Positives = 78/220 (35%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       E   + +        A    K+ +++ + + GVP+   +  
Sbjct: 77  AVHPGYGLLSENTEFAKRCEEEGLIFIGPSADVIASMGSKLEARKTMKAAGVPIVEGVET 136

Query: 114 N----RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
                    +    +  P ++K   GG  +G+ +++  + +         ++ S+     
Sbjct: 137 PVKDAEEATEIAERLGYPIMLKASAGGGGIGMQLVENAEELVKAFEGNQKRAQSFFGDGT 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+++ +   +   ++ D   +V  +   +        K             I  +  
Sbjct: 197 MYMERFIANPHHVEVQIIADHQGNVVPLFERECSIQRRNQK----VVEEAPSPFISQETR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            ++   +  A + IG       ++L D   +  ++LE+N 
Sbjct: 253 DKMLEASVKAAKHIGYVNAGTIEYLVDE-DQNFYFLEMNT 291


>gi|70726314|ref|YP_253228.1| hypothetical protein SH1313 [Staphylococcus haemolyticus JCSC1435]
 gi|68447038|dbj|BAE04622.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
          Length = 453

 Score = 78.2 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 82/220 (37%), Gaps = 18/220 (8%)

Query: 56  NVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
           N +H  +G   E       +E   I +         L  DK+ ++Q V   GVPV P   
Sbjct: 75  NAIHPGYGFLSESTTFAEKVEENNIQFIGPSKKTMELMGDKITARQTVDDAGVPVIPGSK 134

Query: 111 --ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS----WNHGD 164
             +       +    I  P V+K   GG   GI ++K+ + +   L ++ S    + + D
Sbjct: 135 GAVNSVDEIKELAEEIGYPVVLKAASGGGGKGIRIVKEPEQLEKSLKEAKSEGQKYFNDD 194

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           ++ +E ++     +   ++GD   +   +            + +         A +  + 
Sbjct: 195 RVYVEAFIPVAKHVEVQIIGDGKGNYVHLGERDCSV----QRKNQKLIEECPCAALTEER 250

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            +++   A    +A   R     +FL    +   +++E+N
Sbjct: 251 RQQICADAVAVAKASNYRSAGTIEFLVTKDAH--YFIEMN 288


>gi|330683939|gb|EGG95705.1| pyruvate carboxylase [Staphylococcus epidermidis VCU121]
          Length = 1148

 Score = 78.2 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 34/221 (15%), Positives = 75/221 (33%), Gaps = 20/221 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+           I +    +    +  DK++++       +PV P    
Sbjct: 80  AIHPGYGFLSENEQFARRCAEEGIKFIGPHLEHLDMFGDKVKARATALKANLPVIPGTDG 139

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
            I          +    P +IK   GG   G+ ++ ++  +     ++ S         +
Sbjct: 140 PIESYEAAQSFANEAGYPLMIKATSGGGGKGMRIVHEESELEDAFHRAKSEAEKSFGNSE 199

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDI 223
           + IE+Y+D    +   V+GD   ++  +           ++        V P   +   +
Sbjct: 200 IYIERYIDNPKHIEVQVIGDEYGNLIHLYE-----RDCSVQRRHQKVVEVAPSVGLSESL 254

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            K++   A      I        +FL      + F++E+N 
Sbjct: 255 RKKICDAALQLMSHIKYVNAGTVEFLV--SGNEFFFIEVNP 293


>gi|327191470|gb|EGE58491.1| pyruvate carboxylase protein [Rhizobium etli CNPAF512]
          Length = 1154

 Score = 78.2 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 77/221 (34%), Gaps = 18/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E            I +            +K+ ++ +  S GVPV P+   
Sbjct: 85  AIHPGYGLLSESPEFVDACNKAGIIFIGPKADTMRQLGNKVAARNLAISVGVPVVPATEP 144

Query: 114 NRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
               M         I  P ++K   GG   G+ VI+ +  +  ++ ++          D+
Sbjct: 145 LPDDMAEVAKMAAAIGYPVMLKASWGGGGRGMRVIRAEADLAREVTEAKREAMAAFGKDE 204

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           + +E+ V+    +   ++GD   +V  +            K          PA  +    
Sbjct: 205 VYLEKLVERARHVESQILGDTHGNVVHLFERDCSIQRRNQK-----VVERAPAPYLSESQ 259

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +E+   +     A    G    ++L D  + K +++E+N 
Sbjct: 260 RQELAAYSLKIAAATNYIGAGTVEYLMDADTGKFYFIEVNP 300


>gi|66045703|ref|YP_235544.1| carbamoyl-phosphate synthase subunit L [Pseudomonas syringae pv.
           syringae B728a]
 gi|63256410|gb|AAY37506.1| Biotin/lipoyl attachment:Carbamoyl-phosphate synthase L chain,
           ATP-binding:Carbamoyl-phosphate synthetase large chain,
           N-terminal:Biotin carboxylase, C-terminal [Pseudomonas
           syringae pv. syringae B728a]
          Length = 649

 Score = 78.2 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 77/221 (34%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      +E   + +      A      K  +K ++   GVP+ P    
Sbjct: 81  AIHPGYGFLSENADFARAVEDAGLIFLGPPASAIDAMGSKSAAKALMEQAGVPLVPGYHG 140

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
               ++    +   I  P ++K   GG   G+ V++    +   L  +           +
Sbjct: 141 EAQDVETFRAAAERIGYPVLLKATAGGGGKGMKVVEHTGELAEALASAQREALSSFGDAR 200

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           +L+E+YV     +   V  D   +   +            K          PA  +   +
Sbjct: 201 MLVEKYVLTPRHVEIQVFADRHGNCLYLNERDCSIQRRHQK-----VVEEAPAPGLTASL 255

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            K +   A  A QAIG  G    +FL D    + F++E+N 
Sbjct: 256 RKAMGEAAVKAAQAIGYVGAGTVEFLLDAR-GEFFFMEMNT 295


>gi|115523240|ref|YP_780151.1| urea amidolyase related protein [Rhodopseudomonas palustris BisA53]
 gi|115517187|gb|ABJ05171.1| urea amidolyase related protein [Rhodopseudomonas palustris BisA53]
          Length = 1182

 Score = 78.2 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 33/220 (15%), Positives = 78/220 (35%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      L    I +             K +++++ ++ GVP+ P   +
Sbjct: 77  AVHPGYGFLSENRGFAERLAEHGIAFIGPRPEHLDAFGLKHKAREIAANSGVPLLPGSGL 136

Query: 114 NRFTMDS---QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ----SSSWNHGDQL 166
                D+      I  P ++K   GG  +G+ +   + ++          + +     ++
Sbjct: 137 LDSIDDALTEAARIGFPLMLKSTAGGGGIGMQLCHDEATLRDRFATVQRTARASFGDARV 196

Query: 167 LIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIY 224
            +E++V     +   + GD    V  +           L+  +       PA  I   + 
Sbjct: 197 YLERFVAVARHIEVQIFGDGQGRVVALGE-----RDCSLQRRNQKVVEETPAPGISEAMR 251

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             + + A    Q++        +F++D      ++LE+N 
Sbjct: 252 TRLHQAAVALGQSVKYESAGTVEFIYDVEREDFYFLEVNT 291


>gi|310657335|ref|YP_003935056.1| pyruvate carboxylase [Clostridium sticklandii DSM 519]
 gi|308824113|emb|CBH20151.1| pyruvate carboxylase [Clostridium sticklandii]
          Length = 1144

 Score = 78.2 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 38/243 (15%), Positives = 82/243 (33%), Gaps = 24/243 (9%)

Query: 35  QIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSM 91
            + +D  +GL L     D     +H  +G   E+           I +            
Sbjct: 63  YLGIDEIIGLALKK-GVD----AIHPGYGFLSENAEFARKCAEAGIVFIGPTGDMIDNLG 117

Query: 92  DKMRSKQVVSSCGVPVCPSILV----NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147
           DK++SK V  +  VP  P +      +    +       P +IK   GG   G+ ++ K+
Sbjct: 118 DKIKSKIVAKNANVPTIPGVEKPIKSDEEAKEFAAFCGYPVMIKAAAGGGGRGMRIVTKE 177

Query: 148 QSIPLDL-----LQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYS 201
           + +             ++   D + IE+Y++    +   ++GD   ++  +         
Sbjct: 178 EELLEAFHSAQSEAKKAFGIDD-IFIEKYLEKPKHIEVQILGDTHGNIVHLYERDCSIQR 236

Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
              K             +     +++ + A    +A+        +FL D      +++E
Sbjct: 237 RHQK----LIEFTPAVSLTQKKREQICQDALKIAKAVDYCNAGTVEFLVDKNGNH-YFIE 291

Query: 262 INV 264
           +N 
Sbjct: 292 MNP 294


>gi|325285474|ref|YP_004261264.1| pyruvate carboxylase [Cellulophaga lytica DSM 7489]
 gi|324320928|gb|ADY28393.1| pyruvate carboxylase [Cellulophaga lytica DSM 7489]
          Length = 1150

 Score = 78.2 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 34/221 (15%), Positives = 83/221 (37%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC----P 109
            +H  +G   E+          +I +    +       DK+ +K+V  +  VPV      
Sbjct: 79  AIHPGYGFLSENAEFAQKCADNDIIFVGPKVSVLKSLGDKITAKEVAVANNVPVIQSSDK 138

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS-----SWNHGD 164
            +      ++    I  P ++K   GG   G+ VI+  + +     ++      ++   D
Sbjct: 139 DLTDVSIAIEEAKRIGYPIMLKAASGGGGRGMRVIRTQEELEKAFPEARRESLNAFG-DD 197

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            + +E++V+    +   ++ D   ++  +        S + +Y  +         +P + 
Sbjct: 198 TVFLEKFVENPKHIEVQIVADTHGNMVHLYERD---CSVQRRYQKV-IEFAPSIGLPQET 253

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              + + A    +A+    I   +FL D     ++++E+N 
Sbjct: 254 RDSLYKYAIDICKAVNYNNIGTVEFLVD-DDGSIYFIEVNP 293


>gi|219851648|ref|YP_002466080.1| pyruvate carboxylase subunit A [Methanosphaerula palustris E1-9c]
 gi|219545907|gb|ACL16357.1| Carbamoyl-phosphate synthase L chain ATP-binding [Methanosphaerula
           palustris E1-9c]
          Length = 491

 Score = 78.2 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 34/224 (15%), Positives = 72/224 (32%), Gaps = 26/224 (11%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV----CP 109
            +H  +G   E+           I +             K+ +K ++   GVPV      
Sbjct: 79  AIHPGYGFLAENADFAKRCLEEGIVFIGPFWKTIEAMGSKIGAKHMMRKAGVPVLPGTPD 138

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGD 164
            +            I  P ++K   GG  +G+ ++  +  +   L     +  S++    
Sbjct: 139 GVTSIDEAKKVAAEIGYPVIVKASAGGGGIGMQIVNDEDGLESALSTGMRIAESAFG-DP 197

Query: 165 QLLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK---IP 220
            + IE+Y +    +   V+ D    V  +       Y  E      +   V  A    + 
Sbjct: 198 TVFIEKYLIKPRHIEFQVLADRRGHVVHL-------YDRECSIQRRHQKLVEEAPCPIMT 250

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             + + +   A    +A         +FL+       +++E+N 
Sbjct: 251 PHLRERMSASAIAVAKACHYANAGTVEFLY--SGGNYYFMEMNT 292


>gi|94502146|ref|ZP_01308646.1| acetyl-CoA carboxylase, biotin carboxylase, putative [Oceanobacter
           sp. RED65]
 gi|94425717|gb|EAT10725.1| acetyl-CoA carboxylase, biotin carboxylase, putative [Oceanobacter
           sp. RED65]
          Length = 682

 Score = 78.2 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 39/222 (17%), Positives = 74/222 (33%), Gaps = 18/222 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      +E   + +      A      K  SKQ++    VP+ P    
Sbjct: 81  AIHPGYGFLSENAGFARKVEQANMIWVGPPASAIEAMGSKSHSKQLMEQANVPLVPGYHG 140

Query: 114 NRFT----MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
           +             I  P +IK   GG   G+ ++ K + I   +  +          D+
Sbjct: 141 DEQDDAFLASEIEKIGFPVLIKASAGGGGKGMRIVDKKEDIAQAIAGAKREGLNSFGDDK 200

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           LL+E+Y+     +   V  D   +   +            K                D  
Sbjct: 201 LLVEKYISRPRHVEIQVFLDQQGNGVYLFERDCSIQRRHQK----VVEEAPAPDFSGDDR 256

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSR--KVFWLEINV 264
           + +   A  A +AI   G    +FL++      + +++E+N 
Sbjct: 257 QAMGEAALKAAKAIQYEGAGTVEFLYEKQGNQSQFYFMEMNT 298


>gi|317506872|ref|ZP_07964644.1| pyruvate carboxylase [Segniliparus rugosus ATCC BAA-974]
 gi|316254800|gb|EFV14098.1| pyruvate carboxylase [Segniliparus rugosus ATCC BAA-974]
          Length = 1157

 Score = 78.2 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 44/248 (17%), Positives = 92/248 (37%), Gaps = 20/248 (8%)

Query: 28  DAGFKVS-QIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           + G  V   +DVD  +         D  +   +G   E+  +        I +       
Sbjct: 55  EVGHPVRAYLDVDE-IVATAKRCGADAVYPG-YGFLSENPRLARACAEAGIAFIGPSAEI 112

Query: 87  SALSMDKMRSKQVVSSCGVPV----CPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGII 142
             L+ DK R+     + G+PV     PS  V+   + +   ++ P  +K + GG   G+ 
Sbjct: 113 LELAGDKSRAVAAARAAGLPVLASAAPSADVDEL-LAAAESMTFPVFVKAVAGGGGRGMR 171

Query: 143 VIKKDQSIPLDLLQS-----SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKS 197
            + + + +   +L +     +++  G   L +  ++   +   ++ D   +V  +     
Sbjct: 172 RVAEPKELRDAILAASREAEAAFGDGTVFLEQAVINPRHIEVQILADWHGEVVHLYE--- 228

Query: 198 DFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256
                 L+        + PA  +  ++ +++   A    + IG R     +FL D   R 
Sbjct: 229 --RDCSLQRRHQKVIELAPAPNLDPELREKICADAVAFARHIGYRCAGTVEFLVDEQGRH 286

Query: 257 VFWLEINV 264
           VF  E+N 
Sbjct: 287 VFI-EMNP 293


>gi|295398040|ref|ZP_06808096.1| acetyl-CoA carboxylase subunit A [Aerococcus viridans ATCC 11563]
 gi|294973798|gb|EFG49569.1| acetyl-CoA carboxylase subunit A [Aerococcus viridans ATCC 11563]
          Length = 456

 Score = 78.2 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 32/220 (14%), Positives = 75/220 (34%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  FG   E+     +   + I +         L  DK  ++  +++  V   P    
Sbjct: 77  AIHPGFGFLAENSKFAKLCAEMNIEFIGPSPEVIDLMGDKQNARDTMNAAKVQTVPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
            +      ++    +  P ++K   GG   G+ ++ ++        ++S         D+
Sbjct: 137 ILESPGAGIEIAKKVGYPVLLKATSGGGGKGMRMVHEESHFADAYYEASREAKNAFGDDR 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           L +E+ +     +   ++GD   +V  +   +        K             I     
Sbjct: 197 LYMEKVIFPAHHIEVQILGDKFGNVIHLGERECSMQRNHQK----VIEETPSPFITEKTR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +V + A  A + +        +FL D   +  +++E+N 
Sbjct: 253 TQVTQAAVRAAEQLNYESAGTIEFLVDA-DQNYYFMEMNT 291


>gi|228947666|ref|ZP_04109956.1| Pyruvate carboxylase [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
 gi|228812186|gb|EEM58517.1| Pyruvate carboxylase [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
          Length = 1148

 Score = 78.2 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 31/243 (12%), Positives = 83/243 (34%), Gaps = 21/243 (8%)

Query: 35  QIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSM 91
            ID    +  ++   K +   + +H  +G   E+       E   I +         +  
Sbjct: 62  PIDAYLDIEGIIEIAKSNHV-DAIHPGYGFLSENIQFAKRCEEEGIIFIGPKSKHLDMFG 120

Query: 92  DKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147
           DK++++       +PV P     +       +       P +IK   GG   G+ +++  
Sbjct: 121 DKVKARTQAQLAQIPVIPGSDGPVDSLEEVKEFAEKYDYPIIIKASLGGGGRGMRIVRTS 180

Query: 148 QSIPL----DLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSY 202
           + +         ++ +    D++ +E++V+    +   ++ D   +V  +          
Sbjct: 181 EELRESYNRAKSEAKAAFGNDEVYVEKFVEKPKHIEVQILADEEGNVVHLYE-----RDC 235

Query: 203 ELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
            ++        + P   +  D+ + +   A    + +        +FL        +++E
Sbjct: 236 SVQRRHQKVVEIAPSVSLSDDLRQRICEAAVKLTKNVNYLNAGTVEFLV--KDDNFYFIE 293

Query: 262 INV 264
           +N 
Sbjct: 294 VNP 296


>gi|222102905|ref|YP_002539944.1| acetyl-CoA carboxylase biotin carboxylase [Agrobacterium vitis S4]
 gi|221739506|gb|ACM40239.1| acetyl-CoA carboxylase biotin carboxylase [Agrobacterium vitis S4]
          Length = 457

 Score = 78.2 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 39/222 (17%), Positives = 84/222 (37%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--I 111
            +H  +G   E+      +E   + +      A  +  DK+ +K+ +   GVP  P    
Sbjct: 84  AVHPGYGFLSENADFAEAVEQAGLTFIGPPASAIRIMGDKIAAKRAMIEAGVPCVPGPDT 143

Query: 112 LVNRFTMDSQHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
            +     D   +   I  P +IK   GG   G+ +++   ++   +     ++       
Sbjct: 144 ALGEDMADIAEIAAKIGYPVIIKAAGGGGGRGMRIVRDAAALADAVSITREEARRAFGNP 203

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLD 222
           +L +E++++    +   V+ D   +   +           ++          P   IP D
Sbjct: 204 ELYMEKFLEKPRHVEIQVLCDNFGNAVWL-----GHRDCSMQRRHQKVVEEAPSPGIPAD 258

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +   V      A Q IG RG+   +FL+   + + +++E+N 
Sbjct: 259 VAATVGARCVAACQRIGYRGVGTFEFLY--ENGEFYFIEMNT 298


>gi|42520307|ref|NP_966222.1| propionyl-CoA carboxylase, alpha subunit [Wolbachia endosymbiont of
           Drosophila melanogaster]
 gi|42410045|gb|AAS14156.1| propionyl-CoA carboxylase, alpha subunit [Wolbachia endosymbiont of
           Drosophila melanogaster]
          Length = 691

 Score = 78.2 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 30/220 (13%), Positives = 75/220 (34%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      L+   I +         ++ +K+ +K+     GV V P  + 
Sbjct: 81  AVHPGYGFLAENPDFPRALQKHNIDFIGPSAETIEVTANKITAKEAARKAGVNVVPGYMG 140

Query: 114 N----RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
                         +  P ++K   GG   G+ ++   + I L       ++        
Sbjct: 141 KISNAAHAAQVAKEVGFPVMLKAASGGGGKGMRIVNSKKEIELAFTSATNEAEKSFKDGS 200

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+Y++    +   ++ D   ++  +   +        K             I  ++ 
Sbjct: 201 IFIEKYIELPRHIEIQIIADKYGNIVCLGERECSIQRNNQKII----EETPSPFISEEVR 256

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +++        + +G       +F+ D   +  ++LE+N 
Sbjct: 257 QKMYVQCVSLAKQVGYFSAGTVEFVVD-QDQNFYFLEVNT 295


>gi|89099550|ref|ZP_01172425.1| pyruvate carboxylase [Bacillus sp. NRRL B-14911]
 gi|89085703|gb|EAR64829.1| pyruvate carboxylase [Bacillus sp. NRRL B-14911]
          Length = 1152

 Score = 78.2 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 31/221 (14%), Positives = 76/221 (34%), Gaps = 20/221 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+       E   I +         +  DK+++K      G+PV P    
Sbjct: 87  AIHPGYGFLSENIEFAKRCEEEGIIFIGPTSRHLDMFGDKVKAKDQAMRAGIPVIPGSDG 146

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK----DQSIPLDLLQSSSWNHGDQ 165
            +      +        P +IK   GG   G+ +++      ++      ++ +    D+
Sbjct: 147 PVKSLEEVILFGKDHGFPIIIKASLGGGGRGMRIVRSLDDVKEAYERAKSEAKAAFGNDE 206

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDI 223
           + +E++++    +   ++GD S ++              ++        V P   +  + 
Sbjct: 207 VYVEKFIENPKHIEVQIIGDKSGNIV-----HLFERDCSVQRRHQKVVEVAPCVSLSEEF 261

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              +   A    + +        +FL      + F++E+N 
Sbjct: 262 RGRICDAAVRLMKNVDYVNAGTVEFL--TSGDEFFFIEVNP 300


>gi|83942859|ref|ZP_00955319.1| propionyl-CoA carboxylase, alpha subunit [Sulfitobacter sp. EE-36]
 gi|83845867|gb|EAP83744.1| propionyl-CoA carboxylase, alpha subunit [Sulfitobacter sp. EE-36]
          Length = 681

 Score = 78.2 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 76/221 (34%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      LE   + +      A     DK+ SK++    GV   P  + 
Sbjct: 77  AVHPGYGFLSENAKFAEALEAAGVAFVGPPKGAIEKMGDKITSKKIAQEAGVSTVPGYMG 136

Query: 114 NRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGD 164
                D      + I  P ++K   GG   G+ +   D+             ++S+   D
Sbjct: 137 LIEDADEAVKISNEIGYPVMLKASAGGGGKGMRIAWNDEEAREGFQSSKNEAANSFG-DD 195

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           ++ IE++V     +   V+ DA  +   +   +        K             +    
Sbjct: 196 RIFIEKFVTQPRHIEIQVLCDAHGNGIYLGERECSIQRRNQK----VVEEAPSPFLDEAT 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            K +   +    QA+G       +F+ D   +  ++LE+N 
Sbjct: 252 RKAMGEQSVALAQAVGYTSAGTVEFIVDG-DKNFYFLEMNT 291


>gi|325114454|emb|CBZ50010.1| hypothetical protein NCLIV_004860 [Neospora caninum Liverpool]
          Length = 2559

 Score = 78.2 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 45/248 (18%), Positives = 90/248 (36%), Gaps = 29/248 (11%)

Query: 42  VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +  + A  K D  +    G+  E+  +   L  L I +        A   DK+ +  +  
Sbjct: 349 ICQIAAQEKVDAVWPG-WGHASENPNLPRRLRELGITFIGPSATVMAALGDKIAANILAQ 407

Query: 102 SCGVPVCPS-----------------ILVNRFTMDSQH-------LISPPYVIKPLKGGS 137
           + GVP  P                   +  R T+ S          I  P +IK  +GG 
Sbjct: 408 TAGVPSIPWSGDSLQATLDDTGAIPREVFERATVQSAADCEKVAARIGYPIMIKASEGGG 467

Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQL-LIEQYVDGIELTCGVMGDASLDVTEIAVPK 196
             GI ++ + + +     Q  +   G  + +++       +   ++GD       ++   
Sbjct: 468 GKGIRMVDRKEQLRGAYEQVVAEVPGSPVFMMQLCTAARHIEVQILGDEDGQAVALS--- 524

Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256
               S + ++  +         +P    KE++R A    Q++G  G    ++L++    K
Sbjct: 525 GRDCSTQRRFQKIFEEAPPTTVVPPHTMKEMERAAQRLTQSLGYVGAGTVEYLYNRKDNK 584

Query: 257 VFWLEINV 264
            F+LE+N 
Sbjct: 585 FFFLELNP 592


>gi|316934703|ref|YP_004109685.1| carbamoyl-phosphate synthase L chain ATP-binding protein
           [Rhodopseudomonas palustris DX-1]
 gi|315602417|gb|ADU44952.1| Carbamoyl-phosphate synthase L chain ATP-binding protein
           [Rhodopseudomonas palustris DX-1]
          Length = 656

 Score = 78.2 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 35/215 (16%), Positives = 75/215 (34%), Gaps = 14/215 (6%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI----LVN 114
           +G   E+    A      + +      + A   +K  +K+++   GVP  P        +
Sbjct: 87  YGFLAENEDFAASCRDAGLVFIGPSAESIAAMGNKAGAKEIMLKAGVPCVPGYQGEDQSD 146

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL----DLLQSSSWNHGDQLLIEQ 170
              +     I  P +IK + GG   G+ ++K   ++         ++ S      +++E+
Sbjct: 147 AAMIREAERIGFPIMIKAVAGGGGRGMRLVKDAAALADALRSARSEAQSAFGDPTVILER 206

Query: 171 YV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
            +     +   V GD       +            K             +   + +++  
Sbjct: 207 AILQPRHIEIQVFGDRYGGAIHLGERDCSVQRRHQK----LIEEAPSPAVSEALREQMGT 262

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +A  A +AIG  G    +FL D      +++E+N 
Sbjct: 263 VAVNAVKAIGYEGAGTLEFLLDAEGN-FYFMEMNT 296


>gi|254282290|ref|ZP_04957258.1| acetyl-CoA carboxylase, biotin carboxylase [gamma proteobacterium
           NOR51-B]
 gi|219678493|gb|EED34842.1| acetyl-CoA carboxylase, biotin carboxylase [gamma proteobacterium
           NOR51-B]
          Length = 448

 Score = 78.2 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 77/221 (34%), Gaps = 21/221 (9%)

Query: 58  LHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL-- 112
           +H  +G   E+      +E     +         L  DK+ +KQ +   GVP  P     
Sbjct: 78  IHPGYGFLSENADFADQVEKSGFKFIGPTGDTIRLMGDKVSAKQTMEKSGVPTVPGSAGA 137

Query: 113 ---VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
                   +     I  P ++K   GG   G+ V+  ++ +   +     ++++      
Sbjct: 138 LPDDPDAVLKIAREIGYPVIVKAAAGGGGRGMRVVHNEEVLLSSIQVTQSEAAAAFGSPV 197

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           + +E+++     +   V+ D   +               L+          PA  IP ++
Sbjct: 198 VYMEKFLQRPRHVEIQVLADGQGNAV-----HLGDRDCSLQRRHQKVIEEAPAPGIPPEV 252

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             E+      A   +G RG    +FL+       +++E+N 
Sbjct: 253 RDEIGEACVQACLTMGYRGAGTFEFLY--EDGGFYFIEMNT 291


>gi|119897153|ref|YP_932366.1| acetyl-CoA carboxylase biotin carboxylase subunit [Azoarcus sp.
           BH72]
 gi|119669566|emb|CAL93479.1| probable biotin carboxylase (a subunit of acetyl-coa carboxylase)
           [Azoarcus sp. BH72]
          Length = 453

 Score = 78.2 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 36/222 (16%), Positives = 79/222 (35%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         L  DK+ +K  + + GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAERVEQSGFVFIGPRPDTIRLMGDKVSAKDAMKAAGVPCVPGSDG 136

Query: 112 ---LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
                 +  +     I  P +IK   GG   G+ V+  + ++   +     ++ +     
Sbjct: 137 ALPEEPKEIVKIARAIGYPVIIKAAGGGGGRGMRVVHTEAALLNAVTTTRAEAGAAFGNP 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E++++    +   V+ D   +   +            K          PA  I   
Sbjct: 197 TVYMEKFLENPRHVEIQVLADQHGNAVYLGERDCSMQRRHQK-----VIEEAPAPGIDRK 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +  ++      A + IG RG    +FL+   + + +++E+N 
Sbjct: 252 LIAKIGERCAEACRKIGYRGAGTFEFLY--ENGEFYFIEMNT 291


>gi|18312497|ref|NP_559164.1| ribosomal protein S6 modification protein (rimK) [Pyrobaculum
           aerophilum str. IM2]
 gi|18159958|gb|AAL63346.1| ribosomal protein S6 modification protein (rimK) [Pyrobaculum
           aerophilum str. IM2]
          Length = 267

 Score = 78.2 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 47/262 (17%), Positives = 94/262 (35%), Gaps = 43/262 (16%)

Query: 20  KACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIP- 78
           K   + L   G +V  ++++                       GE G+++       IP 
Sbjct: 7   KLLLNELRSLGLQVRPLNIEEVAAPE---------------GLGEVGVIRLAARSRVIPM 51

Query: 79  ---YTHSG------ILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTMDSQHLISPP 127
              Y HSG       ++  LS DK  +   +    VP   + LV       +    +  P
Sbjct: 52  AFTYEHSGGVAINNAMSLILSHDKYFTYLKLKEARVPTPETYLVFGREAAKEVARRLGYP 111

Query: 128 YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN-HGDQLLIEQYV--DGIELTCGVMGD 184
            ++KP  G     + ++K  + +   +LQ ++ + H    L+++++     ++   V+GD
Sbjct: 112 VIVKPTDGSWGRFVNLVKSAEDLESLILQKAAMDSHMHLYLVQEFINKPNRDIRVTVVGD 171

Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244
            ++               + + ++       P KI  ++      +A  A +A+G    S
Sbjct: 172 RAVAAIYRITNG------DWRTNTARGGKAEPVKIDPELED----VAVRASKAVGAY-YS 220

Query: 245 RSDFLFDPLSRKVFWLEINVQP 266
             D       R    LE+N  P
Sbjct: 221 GVD--VVESERGYLVLEVNGVP 240


>gi|300857895|ref|YP_003782878.1| pyruvate carboxylase [Corynebacterium pseudotuberculosis FRC41]
 gi|300685349|gb|ADK28271.1| pyruvate carboxylase [Corynebacterium pseudotuberculosis FRC41]
 gi|302205622|gb|ADL09964.1| Pyruvate carboxylase [Corynebacterium pseudotuberculosis C231]
 gi|302330174|gb|ADL20368.1| Pyruvate carboxylase [Corynebacterium pseudotuberculosis 1002]
 gi|308275857|gb|ADO25756.1| Pyruvate carboxylase [Corynebacterium pseudotuberculosis I19]
          Length = 1141

 Score = 78.2 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 39/242 (16%), Positives = 83/242 (34%), Gaps = 23/242 (9%)

Query: 35  QIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKM 94
            +D+D  +         D  +   +G   E+  +        + +         L+ DK 
Sbjct: 75  YLDIDEVIRAA-KQTGADAVYPG-YGFLSENARLARECAENGLTFIGPPPSVLDLTGDKS 132

Query: 95  RSKQVVSSCGVPVCPSILVNRFTMDSQHLI------SPPYVIKPLKGGSSLGIIVIKKDQ 148
            +       G+P    +     T D + L         P  +K + GG   G+  ++K +
Sbjct: 133 AAVAAAREAGLPT---LTETEPTDDPKELAILSKDQVYPLFVKAVAGGGGRGMRFVEKPE 189

Query: 149 SIPLDLLQSSSWNH----GDQLLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYE 203
            +     ++S          ++  E+  ++   +   ++GDA  ++  +           
Sbjct: 190 DLEKLAAEASREAAAAFGDGRVYAERAVINPQHIEVQILGDAEGNIVHLYE-----RDCS 244

Query: 204 LKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
           L+        + PA+ +  D+  ++   A    + IG  G    +FL D     VF  E+
Sbjct: 245 LQRRHQKVVEIAPAQHLDPDLRDKICADAVAFARHIGYMGAGTVEFLVDEDGNHVFI-EM 303

Query: 263 NV 264
           N 
Sbjct: 304 NP 305


>gi|296156096|ref|ZP_06838935.1| urea carboxylase [Burkholderia sp. Ch1-1]
 gi|295893602|gb|EFG73381.1| urea carboxylase [Burkholderia sp. Ch1-1]
          Length = 1205

 Score = 78.2 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 35/258 (13%), Positives = 85/258 (32%), Gaps = 36/258 (13%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       +   I +             K  ++++  +  V + P   +
Sbjct: 78  AVHPGYGFLSENAAFAQACDDAGIRFIGPTPAQMREFGLKHTARELAQANHVALLPGTGL 137

Query: 114 NRF---TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD----QL 166
                  +     I  P ++K   GG  +G+ + +    +       +     +     +
Sbjct: 138 LPDVSTALREADSIGYPVMLKSTAGGGGIGMSLCRDAAQLESVFASVARLGEANFANAGV 197

Query: 167 LIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIY 224
            +E++V+    +   + GD    V  +           ++  +       PA  +     
Sbjct: 198 YLEKFVENARHIEVQIFGDGRGSVIALGE-----RDCSVQRRNQKVIEETPAPGLTHAER 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY---- 280
             +   A    QA+  +     +F+FD  +R+ ++LE+N +              +    
Sbjct: 253 SALHASAVRLAQAVKYKSAGTVEFVFDADTRRFYFLEVNTR----------LQVEHCVTE 302

Query: 281 --AGYSFRELLLWMVEDA 296
              G    +L+ WM+ +A
Sbjct: 303 EVTGI---DLVEWMIREA 317


>gi|229123468|ref|ZP_04252667.1| Pyruvate carboxylase [Bacillus cereus 95/8201]
 gi|228659955|gb|EEL15596.1| Pyruvate carboxylase [Bacillus cereus 95/8201]
          Length = 1148

 Score = 78.2 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 31/243 (12%), Positives = 83/243 (34%), Gaps = 21/243 (8%)

Query: 35  QIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSM 91
            ID    +  ++   K +   + +H  +G   E+       E   I +         +  
Sbjct: 62  PIDAYLDIEGIIEIAKSNHV-DAIHPGYGFLSENIQFAKRCEEEGIIFIGPKSKHLDMFG 120

Query: 92  DKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147
           DK++++       +PV P     +       +       P +IK   GG   G+ +++  
Sbjct: 121 DKVKARTQAQLAQIPVIPGSDGPVDSLEEVKEFAEKYDYPIIIKASLGGGGRGMRIVRTS 180

Query: 148 QSIPL----DLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSY 202
           + +         ++ +    D++ +E++V+    +   ++ D   +V  +          
Sbjct: 181 EELRESYNRAKSEAKAAFGNDEVYVEKFVEKPKHIEVQILADEEGNVVHLYE-----RDC 235

Query: 203 ELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
            ++        + P   +  D+ + +   A    + +        +FL        +++E
Sbjct: 236 SVQRRHQKVVEIAPSVSLSDDLRQRICEAAVKLTKNVNYLNAGTVEFLV--KDDNFYFIE 293

Query: 262 INV 264
           +N 
Sbjct: 294 VNP 296


>gi|218131189|ref|ZP_03459993.1| hypothetical protein BACEGG_02795 [Bacteroides eggerthii DSM 20697]
 gi|317477294|ref|ZP_07936530.1| phosphoribosylglycinamide formyltransferase 2 [Bacteroides
           eggerthii 1_2_48FAA]
 gi|217986581|gb|EEC52916.1| hypothetical protein BACEGG_02795 [Bacteroides eggerthii DSM 20697]
 gi|316906543|gb|EFV28261.1| phosphoribosylglycinamide formyltransferase 2 [Bacteroides
           eggerthii 1_2_48FAA]
          Length = 388

 Score = 78.2 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 49/253 (19%), Positives = 86/253 (33%), Gaps = 37/253 (14%)

Query: 33  VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
            S +D D ++  V+   KPD+    +     E         L +       ++ SA +++
Sbjct: 48  FSMLDGD-ALERVVRKHKPDIIVPEIEAIRTE--------RLYDFEKEGIQVVPSARAVN 98

Query: 93  -----KMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVIK 145
                K          G+                +   I  P V+KPL   S  G  ++K
Sbjct: 99  FTMNRKAIRDLAAKELGLKTAKYFYAKSLDELKTAAEKIGFPCVVKPLMSSSGKGQSLVK 158

Query: 146 KDQSIPLDLLQSSSWNHGD--QLLIEQYVDGIE----LTCGVMGDASLDVTEIA-VPKSD 198
               +        + + GD  +L+IE+++        LT       +L    I  V K  
Sbjct: 159 SADELEHAWEYGCNGSRGDIKELIIEEFIKFDSEITLLTVTQKNGPTLFCPPIGHVQKGG 218

Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
            Y               PA I     KE Q +A    +A+   G+   +F     +  V+
Sbjct: 219 DY----------RESFQPAHIDPAHLKEAQEMAEKVTRALTGAGLWGVEFFLSHENG-VY 267

Query: 259 WLEINVQP---GM 268
           + E++ +P   GM
Sbjct: 268 FSELSPRPHDTGM 280


>gi|72161632|ref|YP_289289.1| acyl-CoA carboxylase complex A subunit [Thermobifida fusca YX]
 gi|71915364|gb|AAZ55266.1| putative acyl-CoA carboxylase complex A subunit [Thermobifida fusca
           YX]
          Length = 589

 Score = 78.2 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 32/215 (14%), Positives = 72/215 (33%), Gaps = 14/215 (6%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVN 114
           +G   E+      +    + +        AL  DK+ ++++    GVPV P     +   
Sbjct: 81  YGFLAENAAFAQAVREAGLTWIGPSAETIALLADKVAARRIACDVGVPVMPGTGRPVTTA 140

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK----DQSIPLDLLQSSSWNHGDQLLIEQ 170
               D       P  +K   GG   G+ ++       + +   + +++S        +E+
Sbjct: 141 AEVADFARSHGYPVAVKAAHGGGGRGMRIVHDTRQIPELLEAAVREAASAFGRGDCFVER 200

Query: 171 YV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           YV     +    + DA  +V  ++           K             +    ++ ++ 
Sbjct: 201 YVARPRHVETQCLADAHGNVAVLSTRDCSIQRRHQK----LVEEAPAPGLTPHQWELLRE 256

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +    +  G  G +  +FL       + +LE+N 
Sbjct: 257 GSAAILRTTGYVGAATCEFLL-AEDGTLSFLEVNT 290


>gi|70726839|ref|YP_253753.1| pyruvate carboxylase [Staphylococcus haemolyticus JCSC1435]
 gi|68447563|dbj|BAE05147.1| pyruvate carboxylase [Staphylococcus haemolyticus JCSC1435]
          Length = 1149

 Score = 78.2 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 32/221 (14%), Positives = 78/221 (35%), Gaps = 20/221 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       +   I +    I    +  DK++++    +  +PV P    
Sbjct: 80  AIHPGYGFLSENKQFAQRCDEEGIKFIGPHIEHLDMFGDKVKARTTAINAKLPVIPGTDG 139

Query: 114 NRFTMDSQHLI----SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
                ++          P +IK   GG   G+ +++++  +     ++ S         +
Sbjct: 140 PIENFEAAKAFAQEAGFPLMIKATSGGGGKGMRIVREEGELEDAFHRAKSEAEKSFGNSE 199

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDI 223
           + IE+Y+D    +   ++GD   ++  +           ++        V P   +  ++
Sbjct: 200 VYIERYIDNPKHIEVQIIGDEYGNIVHLYE-----RDCSVQRRHQKVVEVAPSVGLSKEL 254

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +   A      I        +FL      + F++E+N 
Sbjct: 255 RERICDAALQLMNNIRYVNAGTVEFLV--SGDEFFFIEVNP 293


>gi|83954029|ref|ZP_00962749.1| propionyl-CoA carboxylase, alpha subunit [Sulfitobacter sp.
           NAS-14.1]
 gi|83841066|gb|EAP80236.1| propionyl-CoA carboxylase, alpha subunit [Sulfitobacter sp.
           NAS-14.1]
          Length = 681

 Score = 78.2 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 76/221 (34%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      LE   + +      A     DK+ SK++    GV   P  + 
Sbjct: 77  AVHPGYGFLSENAKFAEALEAAGVAFVGPPKGAIEKMGDKITSKKIAQEAGVSTVPGYMG 136

Query: 114 NRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGD 164
                D      + I  P ++K   GG   G+ +   D+             ++S+   D
Sbjct: 137 LIEDADEAVKISNEIGYPVMLKASAGGGGKGMRIAWNDEEAREGFQSSKNEAANSFG-DD 195

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           ++ IE++V     +   V+ DA  +   +   +        K             +    
Sbjct: 196 RIFIEKFVTQPRHIEIQVLCDAHGNGIYLGERECSIQRRNQK----VVEEAPSPFLDEAT 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            K +   +    QA+G       +F+ D   +  ++LE+N 
Sbjct: 252 RKAMGEQSVALAQAVGYTSAGTVEFIVDG-DKNFYFLEMNT 291


>gi|85703775|ref|ZP_01034879.1| propionyl-CoA carboxylase, alpha subunit [Roseovarius sp. 217]
 gi|85672703|gb|EAQ27560.1| propionyl-CoA carboxylase, alpha subunit [Roseovarius sp. 217]
          Length = 643

 Score = 78.2 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 41/221 (18%), Positives = 75/221 (33%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      LE   + +    + A     DK+ SK++    GV   P  + 
Sbjct: 54  AVHPGYGFLSENPKFAQALEAAGVAFVGPPVKAIEAMGDKITSKKIAQEAGVSTVPGYMG 113

Query: 114 NRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGD 164
                +      + I  P +IK   GG   G+ +   D+             +SS+   D
Sbjct: 114 LIADAEEAVTISNQIGYPVMIKASAGGGGKGMRIAWTDEEAREGFQSSKNEAASSFG-DD 172

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           ++ IE++V     +   V+ D   +   +   +        K             +    
Sbjct: 173 RIFIEKFVTQPRHIEIQVLCDTHGNGIYLGERECSIQRRNQK----VIEEAPSPFLDEAT 228

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            K +   A    QA+G       +F+ D      F+LE+N 
Sbjct: 229 RKAMGEQAVALAQAVGYASAGTVEFIVDGEKN-FFFLEMNT 268


>gi|167633772|ref|ZP_02392096.1| pyruvate carboxylase [Bacillus anthracis str. A0442]
 gi|170688779|ref|ZP_02879983.1| pyruvate carboxylase [Bacillus anthracis str. A0465]
 gi|254683714|ref|ZP_05147574.1| pyruvate carboxylase [Bacillus anthracis str. CNEVA-9066]
 gi|254743950|ref|ZP_05201633.1| pyruvate carboxylase [Bacillus anthracis str. Kruger B]
 gi|167531178|gb|EDR93865.1| pyruvate carboxylase [Bacillus anthracis str. A0442]
 gi|170667295|gb|EDT18054.1| pyruvate carboxylase [Bacillus anthracis str. A0465]
          Length = 1148

 Score = 78.2 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 31/243 (12%), Positives = 83/243 (34%), Gaps = 21/243 (8%)

Query: 35  QIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSM 91
            ID    +  ++   K +   + +H  +G   E+       E   I +         +  
Sbjct: 62  PIDAYLDIEGIIEIAKSNHV-DAIHPGYGFLSENIQFAKRCEEEGIIFIGPKSKHLDMFG 120

Query: 92  DKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147
           DK++++       +PV P     +       +       P +IK   GG   G+ +++  
Sbjct: 121 DKVKARTQAQLAQIPVIPGSDGPVDSLEEVKEFAEKYDYPIIIKASLGGGGRGMRIVRTS 180

Query: 148 QSIPL----DLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSY 202
           + +         ++ +    D++ +E++V+    +   ++ D   +V  +          
Sbjct: 181 EELRESYNRAKSEAKAAFGNDEVYVEKFVEKPKHIEVQILADEEGNVVHLYE-----RDC 235

Query: 203 ELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
            ++        + P   +  D+ + +   A    + +        +FL        +++E
Sbjct: 236 SVQRRHQKVVEIAPSVSLSDDLRQRICEAAVKLTKNVNYLNAGTVEFLV--KDDNFYFIE 293

Query: 262 INV 264
           +N 
Sbjct: 294 VNP 296


>gi|311108161|ref|YP_003981014.1| carbamoyl-phosphate synthase large chain [Achromobacter
           xylosoxidans A8]
 gi|310762850|gb|ADP18299.1| carbamoyl-phosphate synthase large chain [Achromobacter
           xylosoxidans A8]
          Length = 1079

 Score = 78.2 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 38/262 (14%), Positives = 97/262 (37%), Gaps = 27/262 (10%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ------ 69
           AL D G++   +         D D S  L    L  +    ++H       +VQ      
Sbjct: 589 ALRDDGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVHKENPVGMIVQYGGQTP 648

Query: 70  ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--FTMDSQHL 123
                 LE   +P   +   +  ++ D+ R +++++  G+   P+         +     
Sbjct: 649 LKLARALEANGVPIIGTSPESIDVAEDRERFQKLLNKLGLRQPPNRTARTEGEALAHAAE 708

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVM 182
           I  P V++P        + ++ + Q +   + ++   ++   +L+++++ +  E+    +
Sbjct: 709 IGYPLVVRPSYVLGGRAMEIVHEQQDLERYMREAVKVSNDSPVLLDRFLNNATEVDVDCL 768

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D         +   +       +S  ++  + P  +  ++  E++R   +  +A+   G
Sbjct: 769 ADGETVFIGGVMEHIEQAGV---HSGDSACSLPPYSLSAEVIAEIKRQTTMMAKALNVSG 825

Query: 243 ISRSDFLFDPLSRKVFWLEINV 264
           +    F        V+ LE+N 
Sbjct: 826 LMNVQFAI--QGGDVYVLEVNP 845



 Score = 57.8 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 46/285 (16%), Positives = 97/285 (34%), Gaps = 42/285 (14%)

Query: 18  SGKACASALEDAGF-------------------KVSQIDVD--RSVGLVLAHLKPDLAFN 56
           SG     AL+  G+                    V+ I+    ++V  ++   KPD    
Sbjct: 29  SGAQACKALKAEGYRTILVNSNPATIMTDPETADVTYIEPITWQAVEKIIEREKPDALLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      +L+   +    +   A   + D+ + KQ ++  G+    S +
Sbjct: 89  TMGGQTALNCALDLAHHGVLKKHNVELIGANEHAIEKAEDRQKFKQAMTDIGLESAKSGV 148

Query: 113 VNRFTMDSQ---------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
            +      +              P VI+P       G  +    +       +    +  
Sbjct: 149 AHSMDEAWEVQRRIAAEVGTSGFPAVIRPSFTMGGSGGGIAYNAEEFETICRRGLEASPT 208

Query: 164 DQLLIEQYVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IP 220
            +LLIE+ + G  E    V+ D + + +   ++   D           +S  V PA+ + 
Sbjct: 209 SELLIEESLLGWKEFEMEVVRDKADNCIIVCSIENLDPMGVHT----GDSITVAPAQTLT 264

Query: 221 LDIYKEVQRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
              Y+ ++  +    + IG   G S   F  +P   ++  +E+N 
Sbjct: 265 DKEYQIMRNASIAVLREIGVDTGGSNVQFAVNPRDGRMIVIEMNP 309


>gi|308173823|ref|YP_003920528.1| biotin carboxylase subunit [Bacillus amyloliquefaciens DSM 7]
 gi|307606687|emb|CBI43058.1| biotin carboxylase subunit [Bacillus amyloliquefaciens DSM 7]
 gi|328553250|gb|AEB23742.1| acetyl-CoA carboxylase biotin carboxylase subunit [Bacillus
           amyloliquefaciens TA208]
 gi|328911965|gb|AEB63561.1| biotin carboxylase subunit [Bacillus amyloliquefaciens LL3]
          Length = 449

 Score = 78.2 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 28/220 (12%), Positives = 80/220 (36%), Gaps = 19/220 (8%)

Query: 58  LHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
           +H  +G   E+           I +             K+ +++ +    VP+ P +   
Sbjct: 78  IHPGYGLLSENSRFAERCRKEHITFIGPPGDIIVKMGSKIEARKTMQQAKVPIVPGVSEP 137

Query: 115 ----RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQL 166
                  +     I  P ++K   GG  +G+ ++  ++ +         +++S+     +
Sbjct: 138 LPDVHSALAEARAIGFPVMLKASAGGGGIGMQIVHSEEELAKAFEGNQKRAASFFGDGAM 197

Query: 167 LIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIY 224
            +E+ ++    +   ++ D     +             ++          P+  +  ++ 
Sbjct: 198 YMEKVIENARHIEIQILAD-----SFGNTVHLFERDCSVQRRHQKVIEEAPSPFVDEELR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +   A  A ++IG +     +FL D   +++++LE+N 
Sbjct: 253 QRLGETAVKAAKSIGYQNAGTIEFLVDQK-KQIYFLEMNT 291


>gi|254721549|ref|ZP_05183338.1| pyruvate carboxylase [Bacillus anthracis str. A1055]
          Length = 1148

 Score = 78.2 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 31/243 (12%), Positives = 83/243 (34%), Gaps = 21/243 (8%)

Query: 35  QIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSM 91
            ID    +  ++   K +   + +H  +G   E+       E   I +         +  
Sbjct: 62  PIDAYLDIEGIIEIAKSNHV-DAIHPGYGFLSENIQFAKRCEEEGIIFIGPKSKHLDMFG 120

Query: 92  DKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147
           DK++++       +PV P     +       +       P +IK   GG   G+ +++  
Sbjct: 121 DKVKARTQAQLAQIPVIPGSDGPVDSLEEVKEFAEKYDYPIIIKASLGGGGRGMRIVRTS 180

Query: 148 QSIPL----DLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSY 202
           + +         ++ +    D++ +E++V+    +   ++ D   +V  +          
Sbjct: 181 EELRESYNRAKSEAKAAFGNDEVYVEKFVEKPKHIEVQILADEEGNVVHLYE-----RDC 235

Query: 203 ELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
            ++        + P   +  D+ + +   A    + +        +FL        +++E
Sbjct: 236 SVQRRHQKVVEIAPSVSLSDDLRQRICEAAVKLTKNVNYLNAGTVEFLV--KDDNFYFIE 293

Query: 262 INV 264
           +N 
Sbjct: 294 VNP 296


>gi|170079083|ref|YP_001735721.1| carbamoyl phosphate synthase large subunit [Synechococcus sp. PCC
           7002]
 gi|169886752|gb|ACB00466.1| carbamoyl-phosphate synthase, large subunit [Synechococcus sp. PCC
           7002]
          Length = 1090

 Score = 78.2 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 57/279 (20%), Positives = 106/279 (37%), Gaps = 36/279 (12%)

Query: 18  SGKACASALEDAGFKVSQID------------VDRS---------VGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++             DR+         V  V+   +PD    
Sbjct: 29  SGTQSCKALREEGYEVVLVNSNPATIMTDPETADRTYVEPITPEIVAKVIEKERPDALLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  V       LE   +    + + A  ++ D+   K+ ++  GVPVCPS +
Sbjct: 89  TMGGQTALNTAVSLAKNGTLEKFNVELIGAKLEAIEMAEDRNLFKEAMARIGVPVCPSGI 148

Query: 113 VNRFTMDSQ---HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            +      +    + S P +I+P       G  +    +            +   Q+L+E
Sbjct: 149 ASTMEEAREVAIEIGSYPLIIRPAFTMGGSGGGIAYNQEEYEKICKSGLEASPVSQILVE 208

Query: 170 QYVDG-IELTCGVMGDASLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPAK-IPLDIYKE 226
           + + G  E    VM D + +V  I   ++ D           +S  V PA+ +    Y+ 
Sbjct: 209 KSLLGWKEYELEVMRDLADNVVIICSIENIDPMGVHT----GDSITVAPAQTLTDKEYQR 264

Query: 227 VQRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           ++  +    + IG   G S   F  +PL+ +V  +E+N 
Sbjct: 265 LRDYSLKIIREIGVETGGSNIQFSVNPLNGEVIVIEMNP 303



 Score = 52.8 bits (126), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 23/188 (12%), Positives = 71/188 (37%), Gaps = 9/188 (4%)

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSS 138
            +   A   + D+ R ++++    +    + +    +      + +  P V++P      
Sbjct: 678 GTQPDAIDTAEDRERFEKILHDLEILQPANGIARDYKEAQKIANRVGYPVVVRPSYVLGG 737

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKS 197
             + ++  D+ +   +  +        +L++++++  IE+    + D +  V    + + 
Sbjct: 738 RAMEIVYSDEELDHYMKYAVQVEPDHPILVDKFLENAIEVDVDALCDHTGKVVIGGIME- 796

Query: 198 DFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256
             +  E    S +S   +P   +P ++   ++       Q +   G+   +  +     +
Sbjct: 797 --HIEEAGIHSGDSACSIPHTSLPDEVLSTIREWTVKLAQTLKVVGL--MNIQYAVKDNQ 852

Query: 257 VFWLEINV 264
           V+ LE N 
Sbjct: 853 VYILEANP 860


>gi|196035904|ref|ZP_03103306.1| pyruvate carboxylase [Bacillus cereus W]
 gi|195991553|gb|EDX55519.1| pyruvate carboxylase [Bacillus cereus W]
          Length = 1148

 Score = 78.2 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 31/243 (12%), Positives = 83/243 (34%), Gaps = 21/243 (8%)

Query: 35  QIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSM 91
            ID    +  ++   K +   + +H  +G   E+       E   I +         +  
Sbjct: 62  PIDAYLDIEGIIEIAKSNHV-DAIHPGYGFLSENIQFAKRCEEEGIIFIGPKSKHLDMFG 120

Query: 92  DKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147
           DK++++       +PV P     +       +       P +IK   GG   G+ +++  
Sbjct: 121 DKVKARTQAQLAQIPVIPGSDGPVDSLEEVKEFAEKYDYPIIIKASLGGGGRGMRIVRTS 180

Query: 148 QSIPL----DLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSY 202
           + +         ++ +    D++ +E++V+    +   ++ D   +V  +          
Sbjct: 181 EELRESYNRAKSEAKAAFGNDEVYVEKFVEKPKHIEVQILADEEGNVVHLYE-----RDC 235

Query: 203 ELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
            ++        + P   +  D+ + +   A    + +        +FL        +++E
Sbjct: 236 SVQRRHQKVVEIAPSVSLSDDLRQRICEAAVKLTKNVNYLNAGTVEFLV--KDDNFYFIE 293

Query: 262 INV 264
           +N 
Sbjct: 294 VNP 296


>gi|126736651|ref|ZP_01752390.1| methylcrotonyl-CoA carboxylase, alpha subunit [Roseobacter sp.
           CCS2]
 gi|126713766|gb|EBA10638.1| methylcrotonyl-CoA carboxylase, alpha subunit [Roseobacter sp.
           CCS2]
          Length = 548

 Score = 78.2 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 38/204 (18%), Positives = 74/204 (36%), Gaps = 20/204 (9%)

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT----MDSQHLISPPYVI 130
             + +      A      K  +K ++   GVPV P    +        +    I  P +I
Sbjct: 100 AGLIFIGPSADAIRAMGLKDAAKALMVKAGVPVVPGYHGDNQDPGFLAERASEIGYPVLI 159

Query: 131 KPLKGGSSLGIIVIKKD----QSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDA 185
           K + GG   G+ +++      +++     ++ +      +LIE+Y+     +   V GD 
Sbjct: 160 KAVAGGGGKGMRLVEAASDFLENLASAQAEAQTAFGNADVLIEKYITAPRHIEVQVFGDG 219

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGIS 244
           +  V              L+          PA  +  D+ K +   A  A +AIG  G  
Sbjct: 220 TDAV------HLFERDCSLQRRHQKVIEEAPAPGMTDDVRKAMGDAAVKAAKAIGYAGAG 273

Query: 245 RSDFLFDPLSR----KVFWLEINV 264
             +F+ D +        +++E+N 
Sbjct: 274 TIEFIVDGIDGLRTDGFWFMEMNT 297


>gi|326388682|ref|ZP_08210275.1| urea carboxylase [Novosphingobium nitrogenifigens DSM 19370]
 gi|326206933|gb|EGD57757.1| urea carboxylase [Novosphingobium nitrogenifigens DSM 19370]
          Length = 1210

 Score = 78.2 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 43/256 (16%), Positives = 82/256 (32%), Gaps = 32/256 (12%)

Query: 58  LHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
           +H  +G   E+           I +             K  ++ +  + GVP+ P   + 
Sbjct: 82  IHPGYGFLSENTGFAEACAEAGIAFIGPTPDNIRAFGLKHTARDLAQAHGVPLAPGTGLL 141

Query: 115 RFTMDSQHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG----DQLL 167
              + + H    I  P ++K   GG  +G+ V   +  +       +    G      + 
Sbjct: 142 TDAVMAAHEAARIGYPVILKATAGGGGIGMKVCADETELTEAFATVARLGAGNFGNGGVF 201

Query: 168 IEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYK 225
           +E+YV     +   V GD    V  +           L+  +       PA  +P     
Sbjct: 202 LERYVARARHIEVQVFGDGKGHVVALGE-----RDCSLQRRNQKVVEETPAPLLPEGTRA 256

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285
            +   A         R     +FL+D      F+LE+N             +    G + 
Sbjct: 257 ALIDAAVRLTAGASYRSAGTVEFLYDAERGDFFFLEVNT-----------RLQVEHGVTE 305

Query: 286 R----ELLLWMVEDAS 297
           +    +L+ WM+  A+
Sbjct: 306 QVTGVDLVEWMIRGAA 321


>gi|239813957|ref|YP_002942867.1| acetyl-CoA carboxylase, biotin carboxylase [Variovorax paradoxus
           S110]
 gi|239800534|gb|ACS17601.1| acetyl-CoA carboxylase, biotin carboxylase [Variovorax paradoxus
           S110]
          Length = 449

 Score = 78.2 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 83/222 (37%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---S 110
            +H  +G   E+      +E     +         +  DK+ +KQ +   GVP  P    
Sbjct: 77  AIHPGYGFLSENANFAERVEQSGFQFIGPTPENIRVMGDKVSAKQAMIKAGVPCVPGSEG 136

Query: 111 ILVNRFTMDS--QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
            L +  T +      I  P +IK   GG   G+ V+  + ++   +     ++ +     
Sbjct: 137 ELSDDATTNKRIARAIGYPVIIKAAGGGGGRGMRVVHTEAALINAIQMTKAEAGAAFSNP 196

Query: 165 QLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+++ +   +   ++ D   +   +            K          PA  IP  
Sbjct: 197 AVYMEKFLQNPRHVEIQILADKHKNAVYLGERDCSMQRRHQK-----VIEESPAPGIPRK 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +++      A + IG RG    +FL+   + + +++E+N 
Sbjct: 252 LIEKIGERCAAACKKIGYRGAGTFEFLY--ENGEFYFIEMNT 291


>gi|150376380|ref|YP_001312976.1| carbamoyl-phosphate synthase L chain ATP-binding [Sinorhizobium
           medicae WSM419]
 gi|150030927|gb|ABR63043.1| Carbamoyl-phosphate synthase L chain ATP-binding [Sinorhizobium
           medicae WSM419]
          Length = 670

 Score = 78.2 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 41/240 (17%), Positives = 81/240 (33%), Gaps = 16/240 (6%)

Query: 34  SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDK 93
           S I +DR +   +     D      +G   E+      LE   + +    + A     DK
Sbjct: 62  SYIVIDR-ILEAIRKTGADAVHPG-YGFLSENSAFAEALEKEGVTFIGPPVRAIEAMGDK 119

Query: 94  MRSKQVVSSCGVPVCPSILVNRFTMDSQHL----ISPPYVIKPLKGGSSLGIIVIKKDQS 149
           + SK++ +  GV   P  +      D        I  P +IK   GG   G+ +   +  
Sbjct: 120 ITSKKLAAEAGVSTVPGHMGLIGDADEAARIAASIGFPVMIKASAGGGGKGMRIAWTEDE 179

Query: 150 IPLDLL----QSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYEL 204
                     ++ S    D++ IE++V +   +   V+GD   ++  +   +        
Sbjct: 180 AREGFQSSKNEAKSSFGDDRIFIEKFVTEPRHIEIQVLGDKHGNIVYLGERECSIQRRNQ 239

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K             +     + +   A    +A+        +F+ D      ++LE+N 
Sbjct: 240 K----VIEEAPSPFLDEKTRRAMGEQAVALAKAVAYFSAGTVEFIVDARGN-FYFLEMNT 294


>gi|314915483|gb|EFS79314.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium
           acnes HL005PA4]
          Length = 1068

 Score = 78.2 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 43/297 (14%), Positives = 106/297 (35%), Gaps = 36/297 (12%)

Query: 24  SALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLV------ 68
            A++ AG++   +         D   S  L    L  +   NV+      DG++      
Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSISDKLYFEPLTFEDVMNVID-LEQPDGVIVQFGGQ 637

Query: 69  -----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ-- 121
                   L    +P   + +     + D+   + +++  G+P  P              
Sbjct: 638 TAINLAGPLSAAGVPILGTQVADLDRAEDREGFESLLAELGIPQAPGGTARSSEEAFAVA 697

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
             +  P +++P        + ++   + +   +  +   +    +L+++Y++G+E     
Sbjct: 698 EELGYPVLVRPSYVIGGRAMAIVTSAEELKRYMRDAVHASPDKPVLVDRYLNGLECEVDA 757

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGC 240
           + D     T++ +P    +       S +S  V P  ++   +   +  +     + +  
Sbjct: 758 ICDG----TDVLIPGIMEHIERAGVHSGDSMAVYPPQRMSQQVADRIIEVTTKLARGLKT 813

Query: 241 RGISRSDFLF--DPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +GI    F+   DP + +  V+ +E N +   T     P ++   G S  E+   ++
Sbjct: 814 KGILNIQFVVANDPATGEETVYVIEANPRASRT----VPFLSKVTGVSMAEVATRII 866



 Score = 71.3 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 46/268 (17%), Positives = 100/268 (37%), Gaps = 30/268 (11%)

Query: 25  ALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNVLHGNFG 63
           AL++ G++V  ++        DR V                +L   +PD     L G  G
Sbjct: 36  ALKEEGYEVILVNSNPATIMTDRDVADKVYIEPITLEFVSSILRRERPDAIVPTLGGQTG 95

Query: 64  EDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
            +   +     IL+ L I    + + A   + D+   KQ++   G PV  S +V+     
Sbjct: 96  LNMATELAKSGILDELGIELLGTKLSAIEKAEDRDLFKQLMDELGQPVPASEVVHTVDEA 155

Query: 120 SQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IE 176
            +  + I  P +++P       G  +   +  +   + +    +   + LIEQ + G  E
Sbjct: 156 VKVGNTIGYPLIVRPAYTLGGTGGGMCCDEAELVRIVGKGLELSPVTECLIEQSIAGFKE 215

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +   +M D + +   + V   + +     ++  +        +    ++ ++  +    +
Sbjct: 216 IEYEMMRDGADNT--MVVCTMENFDPVGVHTGDSIVFAPTQTLTDVEHEMLRDASIEIVR 273

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +G  G        DP S + + +E+N 
Sbjct: 274 RLGIEGGCNVQLALDPNSFQYYVIEVNP 301


>gi|313812977|gb|EFS50691.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium
           acnes HL025PA1]
          Length = 1068

 Score = 78.2 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 43/297 (14%), Positives = 106/297 (35%), Gaps = 36/297 (12%)

Query: 24  SALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLV------ 68
            A++ AG++   +         D   S  L    L  +   NV+      DG++      
Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSISDKLYFEPLTFEDVMNVID-LEQPDGVIVQFGGQ 637

Query: 69  -----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ-- 121
                   L    +P   + +     + D+   + +++  G+P  P              
Sbjct: 638 TAINLAGPLSAAGVPILGTQVADLDRAEDREGFESLLAELGIPQAPGGTARSSEEAFAVA 697

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
             +  P +++P        + ++   + +   +  +   +    +L+++Y++G+E     
Sbjct: 698 EELGYPVLVRPSYVIGGRAMAIVTSAEELKRYMRDAVHASPDKPVLVDRYLNGLECEVDA 757

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGC 240
           + D     T++ +P    +       S +S  V P  ++   +   +  +     + +  
Sbjct: 758 ICDG----TDVLIPGIMEHIERAGVHSGDSMAVYPPQRMSQQVADRIIEVTTKLARGLKT 813

Query: 241 RGISRSDFLF--DPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +GI    F+   DP + +  V+ +E N +   T     P ++   G S  E+   ++
Sbjct: 814 KGILNIQFVVANDPATGEETVYVIEANPRASRT----VPFLSKVTGVSMAEVATRII 866



 Score = 72.1 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 46/268 (17%), Positives = 100/268 (37%), Gaps = 30/268 (11%)

Query: 25  ALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNVLHGNFG 63
           AL++ G++V  ++        DR V                +L   +PD     L G  G
Sbjct: 36  ALKEEGYEVILVNSNPATIMTDRDVADKVYIEPITLEFVSSILRRERPDAIVPTLGGQTG 95

Query: 64  EDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
            +   +     IL+ L I    + + A   + D+   KQ++   G PV  S +V+     
Sbjct: 96  LNMATELAKSGILDELGIELLGTKLSAIEKAEDRDLFKQLMDELGQPVPASEVVHTVDEA 155

Query: 120 SQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IE 176
            +  + I  P +++P       G  +   +  +   + +    +   + LIEQ + G  E
Sbjct: 156 VKVGNTIGYPLIVRPAYTLGGTGGGMCCDEAELVRIVGKGLELSPVTECLIEQSIAGFKE 215

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +   +M D + +   + V   + +     ++  +        +    ++ ++  +    +
Sbjct: 216 IEYEMMRDGADNT--MVVCTMENFDPVGVHTGDSIVFAPTQTLTDVEHEMLRDASIEIVR 273

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +G  G        DP S + + +E+N 
Sbjct: 274 TLGIEGGCNVQLALDPNSFQYYVIEVNP 301


>gi|313764490|gb|EFS35854.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium
           acnes HL013PA1]
 gi|313816029|gb|EFS53743.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium
           acnes HL059PA1]
 gi|313827741|gb|EFS65455.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium
           acnes HL063PA2]
 gi|314918233|gb|EFS82064.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium
           acnes HL050PA1]
 gi|314920046|gb|EFS83877.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium
           acnes HL050PA3]
 gi|314932060|gb|EFS95891.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium
           acnes HL067PA1]
 gi|314955931|gb|EFT00331.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium
           acnes HL027PA1]
 gi|314958136|gb|EFT02239.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium
           acnes HL002PA1]
 gi|314967797|gb|EFT11896.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium
           acnes HL037PA1]
 gi|315098501|gb|EFT70477.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium
           acnes HL059PA2]
 gi|315101142|gb|EFT73118.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium
           acnes HL046PA1]
 gi|327450817|gb|EGE97471.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium
           acnes HL087PA3]
 gi|327453837|gb|EGF00492.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium
           acnes HL083PA2]
 gi|328754237|gb|EGF67853.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium
           acnes HL087PA1]
 gi|328754513|gb|EGF68129.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium
           acnes HL025PA2]
          Length = 1068

 Score = 78.2 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 43/297 (14%), Positives = 106/297 (35%), Gaps = 36/297 (12%)

Query: 24  SALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLV------ 68
            A++ AG++   +         D   S  L    L  +   NV+      DG++      
Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSISDKLYFEPLTFEDVMNVID-LEQPDGVIVQFGGQ 637

Query: 69  -----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ-- 121
                   L    +P   + +     + D+   + +++  G+P  P              
Sbjct: 638 TAINLAGPLSAAGVPILGTQVADLDRAEDREGFESLLAELGIPQAPGGTARSSEEAFAVA 697

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
             +  P +++P        + ++   + +   +  +   +    +L+++Y++G+E     
Sbjct: 698 EELGYPVLVRPSYVIGGRAMAIVTSAEELKRYMRDAVHASPDKPVLVDRYLNGLECEVDA 757

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGC 240
           + D     T++ +P    +       S +S  V P  ++   +   +  +     + +  
Sbjct: 758 ICDG----TDVLIPGIMEHIERAGVHSGDSMAVYPPQRMSQQVADRIIEVTTKLARGLKT 813

Query: 241 RGISRSDFLF--DPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +GI    F+   DP + +  V+ +E N +   T     P ++   G S  E+   ++
Sbjct: 814 KGILNIQFVVANDPATGEETVYVIEANPRASRT----VPFLSKVTGVSMAEVATRII 866



 Score = 71.3 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 46/268 (17%), Positives = 100/268 (37%), Gaps = 30/268 (11%)

Query: 25  ALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNVLHGNFG 63
           AL++ G++V  ++        DR V                +L   +PD     L G  G
Sbjct: 36  ALKEEGYEVILVNSNPATIMTDRDVADKVYIEPITLEFVSSILRRERPDAIVPTLGGQTG 95

Query: 64  EDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
            +   +     IL+ L I    + + A   + D+   KQ++   G PV  S +V+     
Sbjct: 96  LNMATELAKSGILDELGIELLGTKLSAIEKAEDRDLFKQLMDELGQPVPASEVVHTVDEA 155

Query: 120 SQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IE 176
            +  + I  P +++P       G  +   +  +   + +    +   + LIEQ + G  E
Sbjct: 156 VKVGNTIGYPLIVRPAYTLGGTGGGMCCDEAELVRIVGKGLELSPVTECLIEQSIAGFKE 215

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +   +M D + +   + V   + +     ++  +        +    ++ ++  +    +
Sbjct: 216 IEYEMMRDGADNT--MVVCTMENFDPVGVHTGDSIVFAPTQTLTDVEHEMLRDASIEIVR 273

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +G  G        DP S + + +E+N 
Sbjct: 274 RLGIEGGCNVQLALDPNSFQYYVIEVNP 301


>gi|225865929|ref|YP_002751307.1| pyruvate carboxylase [Bacillus cereus 03BB102]
 gi|225786784|gb|ACO27001.1| pyruvate carboxylase [Bacillus cereus 03BB102]
          Length = 1148

 Score = 78.2 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 31/243 (12%), Positives = 83/243 (34%), Gaps = 21/243 (8%)

Query: 35  QIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSM 91
            ID    +  ++   K +   + +H  +G   E+       E   I +         +  
Sbjct: 62  PIDAYLDIEGIIEIAKSNHV-DAIHPGYGFLSENIQFAKRCEEEGIIFIGPKSKHLDMFG 120

Query: 92  DKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147
           DK++++       +PV P     +       +       P +IK   GG   G+ +++  
Sbjct: 121 DKVKARTQAQLAQIPVIPGSDGPVDSLEEVKEFAEKYDYPIIIKASLGGGGRGMRIVRTS 180

Query: 148 QSIPL----DLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSY 202
           + +         ++ +    D++ +E++V+    +   ++ D   +V  +          
Sbjct: 181 EELRESYNRAKSEAKAAFGNDEVYVEKFVEKPKHIEVQILADEEGNVVHLYE-----RDC 235

Query: 203 ELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
            ++        + P   +  D+ + +   A    + +        +FL        +++E
Sbjct: 236 SVQRRHQKVVEIAPSVSLSDDLRQRICEAAVKLTKNVNYLNAGTVEFLV--KDDNFYFIE 293

Query: 262 INV 264
           +N 
Sbjct: 294 VNP 296


>gi|225012404|ref|ZP_03702840.1| acetyl-CoA carboxylase, biotin carboxylase [Flavobacteria bacterium
           MS024-2A]
 gi|225003381|gb|EEG41355.1| acetyl-CoA carboxylase, biotin carboxylase [Flavobacteria bacterium
           MS024-2A]
          Length = 444

 Score = 78.2 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 34/221 (15%), Positives = 77/221 (34%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     I E  +I +  +         DK  +K  + + GVP  P    
Sbjct: 77  AIHPGYGFLSENAKFSKICEEHKIKFIGASATMIDQMGDKASAKATMKAAGVPTIPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS-----SSWNHGD 164
            +               P ++K   GG   G+  + K+  +      +     +++ +  
Sbjct: 137 LLESLEEAGAIAKEFGYPVMLKATAGGGGKGMRAVWKEDELEKAWESARQEAKAAFGNDG 196

Query: 165 QLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
             + E+ ++    +   ++GD++     ++           K     +       +   +
Sbjct: 197 MYM-EKLIEEPRHIEIQIVGDSTGKACHLSERDCSIQRRHQK----LTEETPSPFMTDAL 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            K++   A  A + I   G    +FL D   R  +++E+N 
Sbjct: 252 RKKMGDAAVKAAEFIKYEGAGTIEFLVDKH-RNFYFMEMNT 291


>gi|167518558|ref|XP_001743619.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163777581|gb|EDQ91197.1| predicted protein [Monosiga brevicollis MX1]
          Length = 707

 Score = 78.2 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 79/220 (35%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H  +G   E+     +LE   I +   G  A  +  DK+ SK++    GV + P    
Sbjct: 112 AVHPGYGFLSENKAFAQLLEDNGIAFVGPGTHAIEVMGDKIASKKIAEDAGVNIIPGFSG 171

Query: 113 ---VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
                   +     I  P +IK   GG   G+ V   D  +         ++ +    D+
Sbjct: 172 VVQGPDHAIQLAQEIGYPVMIKASAGGGGKGMRVAWNDAEVRAGYRLSSQEAKASFGDDR 231

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           LLIE+Y+D    +   V+ D+  +   +   +        K             +  +  
Sbjct: 232 LLIEKYIDKPRHIEIQVLADSHGNAIYLNERECSIQRRNQK----VIEEAPSTFLNEETR 287

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +   A    +A+  +     +FL D   R  ++ E+N 
Sbjct: 288 RAMGEQACALARAVDYKSAGTVEFLVDSQ-RNFYFCEMNT 326


>gi|118479164|ref|YP_896315.1| pyruvate carboxylase [Bacillus thuringiensis str. Al Hakam]
 gi|229092996|ref|ZP_04224127.1| Pyruvate carboxylase [Bacillus cereus Rock3-42]
 gi|118418389|gb|ABK86808.1| pyruvate carboxylase [Bacillus thuringiensis str. Al Hakam]
 gi|228690367|gb|EEL44153.1| Pyruvate carboxylase [Bacillus cereus Rock3-42]
          Length = 1148

 Score = 78.2 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 31/243 (12%), Positives = 83/243 (34%), Gaps = 21/243 (8%)

Query: 35  QIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSM 91
            ID    +  ++   K +   + +H  +G   E+       E   I +         +  
Sbjct: 62  PIDAYLDIEGIIEIAKSNHV-DAIHPGYGFLSENIQFAKRCEEEGIIFIGPKSKHLDMFG 120

Query: 92  DKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147
           DK++++       +PV P     +       +       P +IK   GG   G+ +++  
Sbjct: 121 DKVKARTQAQLAQIPVIPGSDGPVDSLEEVKEFAEKYDYPIIIKASLGGGGRGMRIVRTS 180

Query: 148 QSIPL----DLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSY 202
           + +         ++ +    D++ +E++V+    +   ++ D   +V  +          
Sbjct: 181 EELRESYNRAKSEAKAAFGNDEVYVEKFVEKPKHIEVQILADEEGNVVHLYE-----RDC 235

Query: 203 ELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
            ++        + P   +  D+ + +   A    + +        +FL        +++E
Sbjct: 236 SVQRRHQKVVEIAPSVSLSDDLRQRICEAAVKLTKNVNYLNAGTVEFLV--KDDNFYFIE 293

Query: 262 INV 264
           +N 
Sbjct: 294 VNP 296


>gi|323356571|ref|YP_004222967.1| pyruvate carboxylase [Microbacterium testaceum StLB037]
 gi|323272942|dbj|BAJ73087.1| pyruvate carboxylase [Microbacterium testaceum StLB037]
          Length = 1135

 Score = 78.2 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 41/251 (16%), Positives = 93/251 (37%), Gaps = 22/251 (8%)

Query: 28  DAGFKVS-QIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           + G  V   +DVD  +  V      D  +   +G   E+  +        I +       
Sbjct: 53  ERGHPVRAYLDVDE-IIRVARECGADAIYPG-YGFLSENPELAEKAAANGITFIGPPAEV 110

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFT---MDSQHLISPPYVIKPLKGGSSLGIIV 143
            +++ +K+ +K+   + GVPV  S   +      +     I  P   K + GG   G+  
Sbjct: 111 LSMAGNKVTAKEHAIAAGVPVLRSTPASDDIDALLAQAEEIGFPLFAKAVAGGGGRGMRR 170

Query: 144 IKKDQSIPLDLLQS-----SSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKS 197
           ++    +   L ++     S++    ++ +EQ V     +   ++ DA+ +         
Sbjct: 171 VESLGELAPALAEAMREAQSAFG-DPRMFLEQAVQRPRHVEVQILADATGETV-----HL 224

Query: 198 DFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS-- 254
                 ++        + PA  +   + +++ R A    ++IG +     +FL +     
Sbjct: 225 FERDCSVQRRHQKVIEIAPAPNLDDAVRQDLHRYAVAFARSIGYQNAGTVEFLLETAGPR 284

Query: 255 -RKVFWLEINV 264
             +V ++E+N 
Sbjct: 285 AGEVVFIEMNP 295


>gi|315108362|gb|EFT80338.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium
           acnes HL030PA2]
          Length = 1068

 Score = 78.2 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 43/297 (14%), Positives = 106/297 (35%), Gaps = 36/297 (12%)

Query: 24  SALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLV------ 68
            A++ AG++   +         D   S  L    L  +   NV+      DG++      
Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSISDKLYFEPLTFEDVMNVID-LEQPDGVIVQFGGQ 637

Query: 69  -----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ-- 121
                   L    +P   + +     + D+   + +++  G+P  P              
Sbjct: 638 TAINLAGPLSAAGVPILGTQVADLDRAEDREGFESLLAELGIPQAPGGTARSSEEAFAVA 697

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
             +  P +++P        + ++   + +   +  +   +    +L+++Y++G+E     
Sbjct: 698 EELGYPVLVRPSYVIGGRAMAIVTSAEELKRYMRDAVHASPDKPVLVDRYLNGLECEVDA 757

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGC 240
           + D     T++ +P    +       S +S  V P  ++   +   +  +     + +  
Sbjct: 758 ICDG----TDVLIPGIMEHIERAGVHSGDSMAVYPPQRMSQQVADRIIEVTTKLARGLKT 813

Query: 241 RGISRSDFLF--DPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +GI    F+   DP + +  V+ +E N +   T     P ++   G S  E+   ++
Sbjct: 814 KGILNIQFVVANDPATGEETVYVIEANPRASRT----VPFLSKVTGVSMAEVATRII 866



 Score = 71.3 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 46/268 (17%), Positives = 100/268 (37%), Gaps = 30/268 (11%)

Query: 25  ALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNVLHGNFG 63
           AL++ G++V  ++        DR V                +L   +PD     L G  G
Sbjct: 36  ALKEEGYEVILVNSNPATIMTDRDVADKVYIEPITLEFVSSILRRERPDAIVPTLGGQTG 95

Query: 64  EDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
            +   +     IL+ L I    + + A   + D+   KQ++   G PV  S +V+     
Sbjct: 96  LNMATELAKSGILDELGIELLGTKLSAIEKAEDRDLFKQLMDELGQPVPASEVVHTVDEA 155

Query: 120 SQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IE 176
            +  + I  P +++P       G  +   +  +   + +    +   + LIEQ + G  E
Sbjct: 156 VKVGNTIGYPLIVRPAYTLGGTGGGMCCDEAELVRIVGKGLELSPVTECLIEQSIAGFKE 215

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +   +M D + +   + V   + +     ++  +        +    ++ ++  +    +
Sbjct: 216 IEYEMMRDGADNT--MVVCTMENFDPVGVHTGDSIVFAPTQTLTDVEHEMLRDASIEIVR 273

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +G  G        DP S + + +E+N 
Sbjct: 274 RLGIEGGCNVQLALDPNSFQYYVIEVNP 301


>gi|229031577|ref|ZP_04187577.1| Pyruvate carboxylase [Bacillus cereus AH1271]
 gi|228729866|gb|EEL80846.1| Pyruvate carboxylase [Bacillus cereus AH1271]
          Length = 1148

 Score = 78.2 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 31/243 (12%), Positives = 84/243 (34%), Gaps = 21/243 (8%)

Query: 35  QIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSM 91
            ID    +  ++   K +   + +H  +G   E+       E   I +         +  
Sbjct: 62  PIDAYLDIEGIIEIAKSNHV-DAIHPGYGFLSENIQFAKRCEEEGIIFIGPKSKHLDMFG 120

Query: 92  DKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147
           DK++++       +PV P     +       +       P +IK   GG   G+ +++  
Sbjct: 121 DKVKARTQAQLAQIPVIPGSDGPVNSIEEVGEFAEKYDYPIIIKASLGGGGRGMRIVRTS 180

Query: 148 QSIPL----DLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSY 202
           + +         ++ +    D++ +E++V+    +   ++ D   +V  +          
Sbjct: 181 EELRESYNRAKSEAKAAFGNDEVYVEKFVEKPKHIEVQILADEEGNVVHLYE-----RDC 235

Query: 203 ELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
            ++        + P   +  D+ + +   A    + +        +FL      + +++E
Sbjct: 236 SVQRRHQKVVEIAPSVSLSDDLRQRICDAAVKLTKNVNYLNAGTVEFLV--KGDEFYFIE 293

Query: 262 INV 264
           +N 
Sbjct: 294 VNP 296


>gi|196038856|ref|ZP_03106164.1| pyruvate carboxylase [Bacillus cereus NVH0597-99]
 gi|301055438|ref|YP_003793649.1| pyruvate carboxylase [Bacillus anthracis CI]
 gi|196030579|gb|EDX69178.1| pyruvate carboxylase [Bacillus cereus NVH0597-99]
 gi|300377607|gb|ADK06511.1| pyruvate carboxylase [Bacillus cereus biovar anthracis str. CI]
          Length = 1148

 Score = 78.2 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 31/243 (12%), Positives = 83/243 (34%), Gaps = 21/243 (8%)

Query: 35  QIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSM 91
            ID    +  ++   K +   + +H  +G   E+       E   I +         +  
Sbjct: 62  PIDAYLDIEGIIEIAKSNHV-DAIHPGYGFLSENIQFAKRCEEEGIIFIGPKSKHLDMFG 120

Query: 92  DKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147
           DK++++       +PV P     +       +       P +IK   GG   G+ +++  
Sbjct: 121 DKVKARTQAQLAQIPVIPGSDGPVDSLEEVKEFAEKYDYPIIIKASLGGGGRGMRIVRTS 180

Query: 148 QSIPL----DLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSY 202
           + +         ++ +    D++ +E++V+    +   ++ D   +V  +          
Sbjct: 181 EELRESYNRAKSEAKAAFGNDEVYVEKFVEKPKHIEVQILADEEGNVVHLYE-----RDC 235

Query: 203 ELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
            ++        + P   +  D+ + +   A    + +        +FL        +++E
Sbjct: 236 SVQRRHQKVVEIAPSVSLSDDLRQRICEAAVKLTKNVNYLNAGTVEFLV--KDDNFYFIE 293

Query: 262 INV 264
           +N 
Sbjct: 294 VNP 296


>gi|241206851|ref|YP_002977947.1| pyruvate carboxylase [Rhizobium leguminosarum bv. trifolii WSM1325]
 gi|240860741|gb|ACS58408.1| pyruvate carboxylase [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 1154

 Score = 78.2 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 33/199 (16%), Positives = 72/199 (36%), Gaps = 15/199 (7%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-LVNRFTMDSQ---HLISPPYVIK 131
            I +            +K+ ++ +  S GVPV P+   +     +       I  P ++K
Sbjct: 107 GIIFIGPRADTMRQLGNKVAARNLAISVGVPVVPATGPLPEDMAEVAKMAEGIGYPVMLK 166

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQLLIEQYVD-GIELTCGVMGDAS 186
              GG   G+  I+  + +  ++ ++          D++ +E+ V+    +   V+GD  
Sbjct: 167 ASWGGGGRGMRAIRDPKDLAREVTEAKREAMAAFGKDEVYLEKLVERARHVESQVLGDTH 226

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISR 245
            +V  +            K          PA  +     +E+   +     A    G   
Sbjct: 227 GNVVHLFERDCSIQRRNQK-----VVERAPAPYLSEAQRQELAAYSLKIAAATNYVGAGT 281

Query: 246 SDFLFDPLSRKVFWLEINV 264
            ++L D  + K +++E+N 
Sbjct: 282 VEYLMDADTGKFYFIEVNP 300


>gi|160937903|ref|ZP_02085261.1| hypothetical protein CLOBOL_02797 [Clostridium bolteae ATCC
           BAA-613]
 gi|158439129|gb|EDP16883.1| hypothetical protein CLOBOL_02797 [Clostridium bolteae ATCC
           BAA-613]
          Length = 1072

 Score = 78.2 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 38/225 (16%), Positives = 82/225 (36%), Gaps = 13/225 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTMDSQHLISPPYV 129
           L  + +P   +       + D+ R   ++  C +P      V       ++ H +  P +
Sbjct: 652 LMKMGVPILGTAAEDVDAAEDRERFDAILEQCNIPRPAGHTVFTAEEAKEAAHKLGYPVL 711

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           ++P       G+ +   D+ I   +   +       +L+++Y+ G E+    + D     
Sbjct: 712 VRPSYVLGGQGMQIAISDEDIDEFIGIINQIAQEHPILVDKYIMGKEIEVDAICDG---- 767

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           T+I +P    +       S +S  V PA  I       +        +A+  +G+    F
Sbjct: 768 TDILIPGIMQHIERTGIHSGDSISVYPAQDITQHNIDTIVDYTEKLARALHVKGMINIQF 827

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           + D     V+ +E+N +   T     P ++   G     L   ++
Sbjct: 828 IVD--GDDVYIIEVNPRSSRT----VPYISKVTGIPIVPLATRII 866



 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 49/289 (16%), Positives = 100/289 (34%), Gaps = 39/289 (13%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQID-------VDRSVG--------------LV 45
           G ++E + +   G     +L++ G +V  ++        D+ +                +
Sbjct: 21  GQAAEFDYA---GTQACRSLKEEGIEVVLLNSNPATIMTDKDIADRVYIEPLTVEVVEQL 77

Query: 46  LAHLKPDLAFNVLHGNFG-------EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQ 98
           +   KPD     L G  G       ED       +   +    +  L    + D+   K+
Sbjct: 78  ILKEKPDSVLPTLGGQAGLNLAMELEDA---GFFKEHNVRLIGTTALTIKKAEDREMFKE 134

Query: 99  VVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
            +   G PV PS +V   +  ++    I  P V++P       G  +    +     L  
Sbjct: 135 TMEKIGEPVAPSDIVEDVKHGLEIAEKIGYPVVLRPAYTLGGSGGGIAANPEQCAEILEN 194

Query: 157 SSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215
               +   Q+L+E+ + G  E+   VM D + +V  I V   +       ++  +     
Sbjct: 195 GLRLSRVGQVLVERCIAGWKEIEYEVMRDGAGNV--ITVCNMENIDPVGVHTGDSIVVAP 252

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              +    Y+ ++  A      +G  G     +  +P S +   +E+N 
Sbjct: 253 SQTLGDKEYQMLRTSALNIISELGITGGCNVQYALNPDSFEYCVIEVNP 301


>gi|6403499|gb|AAF07839.1|AC010871_15 hypothetical protein [Arabidopsis thaliana]
          Length = 269

 Score = 78.2 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 32/112 (28%), Positives = 48/112 (42%), Gaps = 14/112 (12%)

Query: 54  AFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS---CGVPV--- 107
            F  +HG  GEDG +Q +LE   + YT  G+LAS   MDK+ + Q +S+    G+     
Sbjct: 43  VFIAVHGGIGEDGTLQGLLEDEGVSYTGPGVLASRTCMDKVMTSQALSNLSEFGIHTISK 102

Query: 108 ----CPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIP 151
                  I+   F      LI         +KP K G S G+  +   + + 
Sbjct: 103 DVKRTEDIMHETFPNVWDELIKKLQCLTLCVKPAKDGCSTGVARLCSSEDLA 154


>gi|329117301|ref|ZP_08246018.1| carbamoyl-phosphate synthase, large subunit [Streptococcus
           parauberis NCFD 2020]
 gi|326907706|gb|EGE54620.1| carbamoyl-phosphate synthase, large subunit [Streptococcus
           parauberis NCFD 2020]
          Length = 1058

 Score = 78.2 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 43/268 (16%), Positives = 98/268 (36%), Gaps = 30/268 (11%)

Query: 25  ALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNVLHGNFG 63
           AL++ G++V  ++        D+ +                ++   +PD     L G  G
Sbjct: 36  ALKEEGYQVVLVNSNPATIMTDKDIADKVYIEPLTLEFVSRIIRKERPDALLPTLGGQTG 95

Query: 64  EDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM- 118
            +  +Q     IL+ L++    + + +   + D+   KQ++   G P+  S +VN     
Sbjct: 96  LNMAMQLSKSGILKELDVELLGTKLSSIDQAEDRDLFKQLMEELGQPIPESKIVNTVDQA 155

Query: 119 -DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IE 176
            D    I  P +++P       G  +   ++ +          +   Q LIE+ + G  E
Sbjct: 156 VDFAAKIGFPIIVRPAFTLGGTGGGMCANEEQLREIAENGLKLSPVTQCLIERSIAGYKE 215

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +   V+ D + +   + V   + +     ++  +        +     + ++  +    +
Sbjct: 216 IEYEVIRDGADNA--LVVCNMENFDPVGIHTGDSIVFAPTQTLSDIENQMLRDASLKIIR 273

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINV 264
           A+   G        DP S   + +E+N 
Sbjct: 274 ALKIEGGCNVQLALDPKSFNYYVIEVNP 301



 Score = 73.2 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 27/223 (12%), Positives = 72/223 (32%), Gaps = 11/223 (4%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ--HLISPPYV 129
           L    +    + +     + ++   ++V+    +P  P           Q    I  P +
Sbjct: 646 LANAGVTILGTQVEDLDRAENRDLFEKVLKELNIPQPPGQTATNEDEAIQVARKIGFPVL 705

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           ++P        + +++  Q +   +  +   +    +L++ Y+ G E     + D    +
Sbjct: 706 VRPSYVLGGRAMEIVENKQDLQSYMRTAVKASPEHPVLVDSYIIGQECEVDAISDGKHVL 765

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
               +   +       +S  +     P K+   +  ++          + C G+    F+
Sbjct: 766 IPGIMEHIERAGV---HSGDSMAVYPPQKLSPIVIDKIVDYTEKLAIGLKCIGMMNIQFV 822

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
                  V+ +E+N +   T     P ++   G     L   +
Sbjct: 823 I--KGETVYVIEVNPRASRT----VPFLSKVTGIPMANLATKL 859


>gi|307073633|gb|ADN26255.1| fusion protein containing a PLP-dependent cysteine synthase and an
           argininosuccinate lyase [Streptomyces coeruleorubidus]
 gi|307592531|gb|ADN65352.1| diaminoacid synthase/ligase fusion protein [Streptomyces
           coeruleorubidus]
          Length = 755

 Score = 78.2 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 88/228 (38%), Gaps = 23/228 (10%)

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYVIKPLKGGSS 138
            +   A      K  ++++++  G+P   S+ V R      +      P V+KP    +S
Sbjct: 444 GNPPAAVGACRRKSATRRLLADAGLPQPVSMPVTRVAEVPGAVAATGLPCVVKPASDSAS 503

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHG-------DQLLIEQYVDGIELTC-GVMGDASLDVT 190
            G+++    +       +  +  H         ++L+E+ V G E +   +  DA+L + 
Sbjct: 504 TGVLLCTSVEQAQEHAAKLLAITHNVREQAVPPEVLVEELVQGPEFSVETIFVDAALHLV 563

Query: 191 EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR-GISRSDFL 249
            I        S     S +   H  PA +     +E++++   A QAIG R G   ++  
Sbjct: 564 GIT-----RKSVSPPPSFVELRHAFPASLDEAESREIEQVVRAAIQAIGLRHGACHTELR 618

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
                     +EIN +       + PE+   AG    +LL   +  A+
Sbjct: 619 LTAAG--PTIIEINAR---LAGGMIPELIRLAGG--PDLLTQQLRAAA 659


>gi|289425379|ref|ZP_06427156.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium
           acnes SK187]
 gi|289154357|gb|EFD03045.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium
           acnes SK187]
 gi|313792178|gb|EFS40279.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium
           acnes HL110PA1]
 gi|313801871|gb|EFS43105.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium
           acnes HL110PA2]
 gi|313838697|gb|EFS76411.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium
           acnes HL086PA1]
 gi|315078052|gb|EFT50103.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium
           acnes HL053PA2]
 gi|327330221|gb|EGE71970.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium
           acnes HL097PA1]
 gi|327453105|gb|EGE99759.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium
           acnes HL092PA1]
          Length = 1068

 Score = 78.2 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 43/297 (14%), Positives = 106/297 (35%), Gaps = 36/297 (12%)

Query: 24  SALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLV------ 68
            A++ AG++   +         D   S  L    L  +   NV+      DG++      
Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSISDKLYFEPLTFEDVMNVID-LEQPDGVIVQFGGQ 637

Query: 69  -----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ-- 121
                   L    +P   + +     + D+   + +++  G+P  P              
Sbjct: 638 TAINLAGPLSAAGVPILGTQVADLDRAEDREGFESLLAELGIPQAPGGTARSSEEAFAVA 697

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
             +  P +++P        + ++   + +   +  +   +    +L+++Y++G+E     
Sbjct: 698 EELGYPVLVRPSYVIGGRAMAIVTSAEELKRYMRDAVHASPDKPVLVDRYLNGLECEVDA 757

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGC 240
           + D     T++ +P    +       S +S  V P  ++   +   +  +     + +  
Sbjct: 758 ICDG----TDVLIPGIMEHIERAGVHSGDSMAVYPPQRMSQQVADRIIEVTTKLARGLKT 813

Query: 241 RGISRSDFLF--DPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +GI    F+   DP + +  V+ +E N +   T     P ++   G S  E+   ++
Sbjct: 814 KGILNIQFVVANDPATGEETVYVIEANPRASRT----VPFLSKVTGVSMAEVATRII 866



 Score = 71.7 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 46/268 (17%), Positives = 100/268 (37%), Gaps = 30/268 (11%)

Query: 25  ALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNVLHGNFG 63
           AL++ G++V  ++        DR V                +L   +PD     L G  G
Sbjct: 36  ALKEEGYEVILVNSNPATIMTDRDVADKVYIEPITLEFVSSILRRERPDAIVPTLGGQTG 95

Query: 64  EDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
            +   +     IL+ L I    + + A   + D+   KQ++   G PV  S +V+     
Sbjct: 96  LNMATELAKSGILDELGIELLGTKLSAIEKAEDRDLFKQLMDELGQPVPASEVVHTVDEA 155

Query: 120 SQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IE 176
            +  + I  P +++P       G  +   +  +   + +    +   + LIEQ + G  E
Sbjct: 156 VKVGNTIGYPLIVRPAYTLGGTGGGMCCDEAELVRIVGKGLELSPVTECLIEQSIAGFKE 215

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +   +M D + +   + V   + +     ++  +        +    ++ ++  +    +
Sbjct: 216 IEYEMMRDGADNT--MVVCTMENFDPVGVHTGDSIVFAPTQTLTDVEHEMLRDASIEIVR 273

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +G  G        DP S + + +E+N 
Sbjct: 274 TLGIEGGCNVQLALDPNSFQYYVIEVNP 301


>gi|285017130|ref|YP_003374841.1| acetyl-CoA carboxylase, biotin carboxylase subunit protein
           [Xanthomonas albilineans GPE PC73]
 gi|283472348|emb|CBA14854.1| probable acetyl-coa carboxylase, biotin carboxylase subunit protein
           [Xanthomonas albilineans]
          Length = 455

 Score = 78.2 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 41/225 (18%), Positives = 84/225 (37%), Gaps = 27/225 (12%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+      +E     +         L  DK+ + + + + GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAERVEQSGFIFIGPKADTIRLMGDKVEAIRAMKAAGVPCVPGSGG 136

Query: 111 -----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWN 161
                I+ N         I  P +IK   GG   G+ V+  + ++   +     ++ +  
Sbjct: 137 PLGEDIVAN---TKIAREIGYPVIIKAAGGGGGRGMRVVHSEAALKAAIETTKSEAKAAF 193

Query: 162 HGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-I 219
             DQ+ +E++++    +   V+ D   +   +            K          PA  I
Sbjct: 194 SNDQVYMEKFLENPRHVEIQVLADGQGNAIHLGERDCSMQRRHQK-----VVEEAPAPGI 248

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             ++  E+ ++   A   IG RG    +FLF   + + +++E+N 
Sbjct: 249 TEELRNEIGKVCVDACIRIGYRGAGTFEFLF--ENGRFYFIEMNT 291


>gi|228916584|ref|ZP_04080150.1| Pyruvate carboxylase [Bacillus thuringiensis serovar pulsiensis
           BGSC 4CC1]
 gi|228843163|gb|EEM88245.1| Pyruvate carboxylase [Bacillus thuringiensis serovar pulsiensis
           BGSC 4CC1]
          Length = 1148

 Score = 78.2 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 31/243 (12%), Positives = 83/243 (34%), Gaps = 21/243 (8%)

Query: 35  QIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSM 91
            ID    +  ++   K +   + +H  +G   E+       E   I +         +  
Sbjct: 62  PIDAYLDIEGIIEIAKSNHV-DAIHPGYGFLSENIQFAKRCEEEGIIFIGPKSKHLDMFG 120

Query: 92  DKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147
           DK++++       +PV P     +       +       P +IK   GG   G+ +++  
Sbjct: 121 DKVKARTQAQLAQIPVIPGSDGPVDSLEEVKEFAEKYDYPIIIKASLGGGGRGMRIVRTS 180

Query: 148 QSIPL----DLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSY 202
           + +         ++ +    D++ +E++V+    +   ++ D   +V  +          
Sbjct: 181 EELRESYNRAKSEAKAAFGNDEVYVEKFVEKPKHIEVQILADEEGNVVHLYE-----RDC 235

Query: 203 ELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
            ++        + P   +  D+ + +   A    + +        +FL        +++E
Sbjct: 236 SVQRRHQKVVEIAPSVSLSDDLRQRICEAAVKLTKNVNYLNAGTVEFLV--KDDNFYFIE 293

Query: 262 INV 264
           +N 
Sbjct: 294 VNP 296


>gi|228935262|ref|ZP_04098088.1| Pyruvate carboxylase [Bacillus thuringiensis serovar andalousiensis
           BGSC 4AW1]
 gi|228824427|gb|EEM70233.1| Pyruvate carboxylase [Bacillus thuringiensis serovar andalousiensis
           BGSC 4AW1]
          Length = 1148

 Score = 78.2 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 31/243 (12%), Positives = 83/243 (34%), Gaps = 21/243 (8%)

Query: 35  QIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSM 91
            ID    +  ++   K +   + +H  +G   E+       E   I +         +  
Sbjct: 62  PIDAYLDIEGIIEIAKSNHV-DAIHPGYGFLSENIQFAKRCEEEGIIFIGPKSKHLDMFG 120

Query: 92  DKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147
           DK++++       +PV P     +       +       P +IK   GG   G+ +++  
Sbjct: 121 DKVKARTQAQLAQIPVIPGSDGPVDSLEEVKEFAEKYDYPIIIKASLGGGGRGMRIVRTS 180

Query: 148 QSIPL----DLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSY 202
           + +         ++ +    D++ +E++V+    +   ++ D   +V  +          
Sbjct: 181 EELRESYNRAKSEAKAAFGNDEVYVEKFVEKPKHIEVQILADEEGNVVHLYE-----RDC 235

Query: 203 ELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
            ++        + P   +  D+ + +   A    + +        +FL        +++E
Sbjct: 236 SVQRRHQKVVEIAPSVSLSDDLRQRICEAAVKLTKNVNYLNAGTVEFLV--KDDNFYFIE 293

Query: 262 INV 264
           +N 
Sbjct: 294 VNP 296


>gi|229186187|ref|ZP_04313356.1| Pyruvate carboxylase [Bacillus cereus BGSC 6E1]
 gi|228597363|gb|EEK55014.1| Pyruvate carboxylase [Bacillus cereus BGSC 6E1]
          Length = 1148

 Score = 78.2 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 31/243 (12%), Positives = 83/243 (34%), Gaps = 21/243 (8%)

Query: 35  QIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSM 91
            ID    +  ++   K +   + +H  +G   E+       E   I +         +  
Sbjct: 62  PIDAYLDIEGIIEIAKSNHV-DAIHPGYGFLSENIQFAKRCEEEGIIFIGPKSKHLDMFG 120

Query: 92  DKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147
           DK++++       +PV P     +       +       P +IK   GG   G+ +++  
Sbjct: 121 DKVKARTQAQLAQIPVIPGSDGPVDSLEEVKEFAEKYDYPIIIKASLGGGGRGMRIVRTS 180

Query: 148 QSIPL----DLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSY 202
           + +         ++ +    D++ +E++V+    +   ++ D   +V  +          
Sbjct: 181 EELRESYNRAKSEAKAAFGNDEVYVEKFVEKPKHIEVQILADEEGNVVHLYE-----RDC 235

Query: 203 ELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
            ++        + P   +  D+ + +   A    + +        +FL        +++E
Sbjct: 236 SVQRRHQKVVEIAPSVSLSDDLRQRICEAAVKLTKNVNYLNAGTVEFLV--KDDNFYFIE 293

Query: 262 INV 264
           +N 
Sbjct: 294 VNP 296


>gi|196045771|ref|ZP_03113000.1| pyruvate carboxylase [Bacillus cereus 03BB108]
 gi|196023211|gb|EDX61889.1| pyruvate carboxylase [Bacillus cereus 03BB108]
          Length = 1148

 Score = 78.2 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 31/243 (12%), Positives = 83/243 (34%), Gaps = 21/243 (8%)

Query: 35  QIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSM 91
            ID    +  ++   K +   + +H  +G   E+       E   I +         +  
Sbjct: 62  PIDAYLDIEGIIEIAKSNHV-DAIHPGYGFLSENIQFAKRCEEEGIIFIGPKSKHLDMFG 120

Query: 92  DKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147
           DK++++       +PV P     +       +       P +IK   GG   G+ +++  
Sbjct: 121 DKVKARTQAQLAQIPVIPGSDGPVDSLEEVKEFAEKYDYPIIIKASLGGGGRGMRIVRTS 180

Query: 148 QSIPL----DLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSY 202
           + +         ++ +    D++ +E++V+    +   ++ D   +V  +          
Sbjct: 181 EELRESYNRAKSEAKAAFGNDEVYVEKFVEKPKHIEVQILADEEGNVVHLYE-----RDC 235

Query: 203 ELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
            ++        + P   +  D+ + +   A    + +        +FL        +++E
Sbjct: 236 SVQRRHQKVVEIAPSVSLSDDLRQRICEAAVKLTKNVNYLNAGTVEFLV--KDDNFYFIE 293

Query: 262 INV 264
           +N 
Sbjct: 294 VNP 296


>gi|218905078|ref|YP_002452912.1| pyruvate carboxylase [Bacillus cereus AH820]
 gi|218537792|gb|ACK90190.1| pyruvate carboxylase [Bacillus cereus AH820]
          Length = 1148

 Score = 78.2 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 31/243 (12%), Positives = 83/243 (34%), Gaps = 21/243 (8%)

Query: 35  QIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSM 91
            ID    +  ++   K +   + +H  +G   E+       E   I +         +  
Sbjct: 62  PIDAYLDIEGIIEIAKSNHV-DAIHPGYGFLSENIQFAKRCEEEGIIFIGPKSKHLDMFG 120

Query: 92  DKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147
           DK++++       +PV P     +       +       P +IK   GG   G+ +++  
Sbjct: 121 DKVKARTQAQLAQIPVIPGSDGPVDSLEEVKEFAEKYDYPIIIKASLGGGGRGMRIVRTS 180

Query: 148 QSIPL----DLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSY 202
           + +         ++ +    D++ +E++V+    +   ++ D   +V  +          
Sbjct: 181 EELRESYNRAKSEAKAAFGNDEVYVEKFVEKPKHIEVQILADEEGNVVHLYE-----RDC 235

Query: 203 ELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
            ++        + P   +  D+ + +   A    + +        +FL        +++E
Sbjct: 236 SVQRRHQKVVEIAPSVSLSDDLRQRICEAAVKLTKNVNYLNAGTVEFLV--KDDNFYFIE 293

Query: 262 INV 264
           +N 
Sbjct: 294 VNP 296


>gi|49478462|ref|YP_038009.1| pyruvate carboxylase [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|49330018|gb|AAT60664.1| pyruvate carboxylase [Bacillus thuringiensis serovar konkukian str.
           97-27]
          Length = 1148

 Score = 78.2 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 31/243 (12%), Positives = 83/243 (34%), Gaps = 21/243 (8%)

Query: 35  QIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSM 91
            ID    +  ++   K +   + +H  +G   E+       E   I +         +  
Sbjct: 62  PIDAYLDIEGIIEIAKSNHV-DAIHPGYGFLSENIQFAKRCEEEGIIFIGPKSKHLDMFG 120

Query: 92  DKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147
           DK++++       +PV P     +       +       P +IK   GG   G+ +++  
Sbjct: 121 DKVKARTQAQLAQIPVIPGSDGPVDSLEEVKEFAEKYDYPIIIKASLGGGGRGMRIVRTS 180

Query: 148 QSIPL----DLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSY 202
           + +         ++ +    D++ +E++V+    +   ++ D   +V  +          
Sbjct: 181 EELRESYNRAKSEAKAAFGNDEVYVEKFVEKPKHIEVQILADEEGNVVHLYE-----RDC 235

Query: 203 ELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
            ++        + P   +  D+ + +   A    + +        +FL        +++E
Sbjct: 236 SVQRRHQKVVEIAPSVSLSDDLRQRICEAAVKLTKNVNYLNAGTVEFLV--KDDNFYFIE 293

Query: 262 INV 264
           +N 
Sbjct: 294 VNP 296


>gi|30264018|ref|NP_846395.1| pyruvate carboxylase [Bacillus anthracis str. Ames]
 gi|47529455|ref|YP_020804.1| pyruvate carboxylase [Bacillus anthracis str. 'Ames Ancestor']
 gi|49186857|ref|YP_030109.1| pyruvate carboxylase [Bacillus anthracis str. Sterne]
 gi|65321343|ref|ZP_00394302.1| COG1038: Pyruvate carboxylase [Bacillus anthracis str. A2012]
 gi|165872192|ref|ZP_02216831.1| pyruvate carboxylase [Bacillus anthracis str. A0488]
 gi|167641016|ref|ZP_02399273.1| pyruvate carboxylase [Bacillus anthracis str. A0193]
 gi|170705876|ref|ZP_02896339.1| pyruvate carboxylase [Bacillus anthracis str. A0389]
 gi|177654299|ref|ZP_02936228.1| pyruvate carboxylase [Bacillus anthracis str. A0174]
 gi|190566122|ref|ZP_03019041.1| pyruvate carboxylase [Bacillus anthracis Tsiankovskii-I]
 gi|227816721|ref|YP_002816730.1| pyruvate carboxylase [Bacillus anthracis str. CDC 684]
 gi|229601337|ref|YP_002868247.1| pyruvate carboxylase [Bacillus anthracis str. A0248]
 gi|254736059|ref|ZP_05193765.1| pyruvate carboxylase [Bacillus anthracis str. Western North America
           USA6153]
 gi|254754271|ref|ZP_05206306.1| pyruvate carboxylase [Bacillus anthracis str. Vollum]
 gi|254758038|ref|ZP_05210065.1| pyruvate carboxylase [Bacillus anthracis str. Australia 94]
 gi|30258663|gb|AAP27881.1| pyruvate carboxylase [Bacillus anthracis str. Ames]
 gi|47504603|gb|AAT33279.1| pyruvate carboxylase [Bacillus anthracis str. 'Ames Ancestor']
 gi|49180784|gb|AAT56160.1| pyruvate carboxylase [Bacillus anthracis str. Sterne]
 gi|164712139|gb|EDR17677.1| pyruvate carboxylase [Bacillus anthracis str. A0488]
 gi|167511066|gb|EDR86455.1| pyruvate carboxylase [Bacillus anthracis str. A0193]
 gi|170129416|gb|EDS98280.1| pyruvate carboxylase [Bacillus anthracis str. A0389]
 gi|172080789|gb|EDT65870.1| pyruvate carboxylase [Bacillus anthracis str. A0174]
 gi|190563041|gb|EDV17007.1| pyruvate carboxylase [Bacillus anthracis Tsiankovskii-I]
 gi|227004854|gb|ACP14597.1| pyruvate carboxylase [Bacillus anthracis str. CDC 684]
 gi|229265745|gb|ACQ47382.1| pyruvate carboxylase [Bacillus anthracis str. A0248]
          Length = 1148

 Score = 78.2 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 31/243 (12%), Positives = 83/243 (34%), Gaps = 21/243 (8%)

Query: 35  QIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSM 91
            ID    +  ++   K +   + +H  +G   E+       E   I +         +  
Sbjct: 62  PIDAYLDIEGIIEIAKSNHV-DAIHPGYGFLSENIQFAKRCEEEGIIFIGPKSKHLDMFG 120

Query: 92  DKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147
           DK++++       +PV P     +       +       P +IK   GG   G+ +++  
Sbjct: 121 DKVKARTQAQLAQIPVIPGSDGPVDSLEEVKEFAEKYDYPIIIKASLGGGGRGMRIVRTS 180

Query: 148 QSIPL----DLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSY 202
           + +         ++ +    D++ +E++V+    +   ++ D   +V  +          
Sbjct: 181 EELRESYNRAKSEAKAAFGNDEVYVEKFVEKPKHIEVQILADEEGNVVHLYE-----RDC 235

Query: 203 ELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
            ++        + P   +  D+ + +   A    + +        +FL        +++E
Sbjct: 236 SVQRRHQKVVEIAPSVSLSDDLRQRICEAAVKLTKNVNYLNAGTVEFLV--KDDNFYFIE 293

Query: 262 INV 264
           +N 
Sbjct: 294 VNP 296


>gi|298480513|ref|ZP_06998710.1| carbamoyl-phosphate synthase large subunit [Bacteroides sp. D22]
 gi|298273334|gb|EFI14898.1| carbamoyl-phosphate synthase large subunit [Bacteroides sp. D22]
          Length = 371

 Score = 78.2 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 41/195 (21%), Positives = 83/195 (42%), Gaps = 18/195 (9%)

Query: 71  ILELLEIPYTHSGILASALSMDKMRSK-QVVSSCGVPVCPSILVNRFTMDSQHLISPPYV 129
           +L L  IPY       +  + +K + + +V            L     M S    S P +
Sbjct: 86  LLGLNGIPY-----NVALDARNKFQMREKVAHQQACQQPNYTLYQSGNMPS----SYPVI 136

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC-GVMGDASLD 188
           +KP+ G  S G+  + + +     L ++   +  + +LIE+Y++G E++   +       
Sbjct: 137 VKPVDGSCSNGVTKVSRKEDFAQALDRALQASCNNCILIEEYIEGREVSVESISFHGKHY 196

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC-RGISRSD 247
           V  I   ++    Y      + + H  P+ +P DI ++++        AIG   G S ++
Sbjct: 197 VITITDKETTGAPY-----FVETAHHQPSNLPFDIQEKLKCAVKSMLDAIGINNGASHAE 251

Query: 248 FLFDPLSRKVFWLEI 262
           F  D  +  +F++E+
Sbjct: 252 FKID-QNGNIFFIEV 265


>gi|229816276|ref|ZP_04446585.1| hypothetical protein COLINT_03328 [Collinsella intestinalis DSM
           13280]
 gi|229808127|gb|EEP43920.1| hypothetical protein COLINT_03328 [Collinsella intestinalis DSM
           13280]
          Length = 1094

 Score = 78.2 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 45/278 (16%), Positives = 94/278 (33%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG      L++ G++V  +         D                +  V+   +PD    
Sbjct: 29  SGAQACKVLKEDGYEVVLVNSNPATIMTDPGLADRTYVEPITPEFIERVIERERPDALLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--S 110
            L G  G +  V      +LE   +      + A     D+    + ++  G+ V     
Sbjct: 89  TLGGQTGLNAAVDLARSGVLERYGVEMIGCDLAAIERGEDRKLFNEAMAELGLEVARSGY 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +        P V++P       G  +   +  +   + Q    +   ++L+E+
Sbjct: 149 AYSVEDALAIVERTGYPCVLRPSFTMGGAGGGIAHDEAELIQIVTQGLELSPAGEVLVEE 208

Query: 171 YVDG-IELTCGVMGDASL-DVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            ++G  E    VM D +   +   ++   D           +S  V PA+ +    Y+ +
Sbjct: 209 SIEGWKEYEMEVMRDRAGNGIIVCSIENLDPMGVHT----GDSITVAPAQTLSDLEYQRM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RAASLAILEKIGVETGGSNVQFAVNPQNGRLIVIEMNP 302



 Score = 60.1 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 25/225 (11%), Positives = 80/225 (35%), Gaps = 12/225 (5%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ--HLISPPYVIKPL 133
            +    +   A   + D+ R   ++   G+   P+ +   F         I  P +++P 
Sbjct: 672 GVKIMGTQPDAIDFAEDRERFSALLDRLGIMYPPAGMATSFEEAEAVAAQIGYPLLVRPS 731

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT-CGVMGDASLDVTEI 192
                 G+++    + +   + +++  +    + ++++++G   +    + D        
Sbjct: 732 YVLGGRGMMIAYDAERLREYMAEATRVSPDHPIYLDRFLEGAYESDVDALCDGENVYIGG 791

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            +   +       +S  ++T + P      + ++++        A+G RG+   +  +  
Sbjct: 792 ILEHIEEAGI---HSGDSATCIPPFSFSESLQEKLRETTRRIALALGVRGL--VNVQYAV 846

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
               ++ +E N +   T     P ++   G         ++  A+
Sbjct: 847 KGDAIYVIEANPRASRT----VPFISKATGVPLARCAARIMAGAA 887


>gi|209528194|ref|ZP_03276664.1| carbamoyl-phosphate synthase, large subunit [Arthrospira maxima
           CS-328]
 gi|209491379|gb|EDZ91764.1| carbamoyl-phosphate synthase, large subunit [Arthrospira maxima
           CS-328]
          Length = 1077

 Score = 78.2 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 56/279 (20%), Positives = 102/279 (36%), Gaps = 36/279 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVDRS------------VGLVLAHLKPDLAFN 56
           SG     AL + G+ V  +         D + +            V  V+   +PD    
Sbjct: 29  SGTQACKALREEGYDVVLVNSNPATIMTDPETARRTYIEPLTPEIVEKVIEAERPDALLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  V      +L+   +    + + A   + D++  KQ +   GV  CPS +
Sbjct: 89  TMGGQTALNIAVALSKNGVLDKYGVELIGAKLDAIEKAEDRLLFKQAMEKIGVGCCPSGI 148

Query: 113 ---VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
              +N     ++ + S P +I+P       G  +    +      +     +   Q+L+E
Sbjct: 149 ANNLNEARAIAEQIGSYPLIIRPAFTMGGTGGGIAYNQEEYEELAIAGLDASPMSQILVE 208

Query: 170 QYVDG-IELTCGVMGD-ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKE 226
           Q + G  E    VM D A   V   ++   D           +S  V PA+ +    Y+ 
Sbjct: 209 QSLIGWKEYELEVMRDLADNVVIICSIENLDPMGVHT----GDSITVAPAQTLTDKEYQR 264

Query: 227 VQRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           ++  A    + IG   G S   F  +P++  V  +E+N 
Sbjct: 265 LRDAAIKIIREIGVETGGSNIQFSVNPVNGDVIVIEMNP 303



 Score = 55.1 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/212 (11%), Positives = 80/212 (37%), Gaps = 13/212 (6%)

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGSS 138
            +   +   + D+ R ++++    +    + +   +   +     I  P V++P      
Sbjct: 667 GTSPDSIDTAEDRERFEKILRELNIQQAANGMARSYEEALAVAGRIGYPVVVRPSYVLGG 726

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKS 197
             + ++  D+ +   +  +        +L++++++  +E+    + D + +V    + + 
Sbjct: 727 RAMEIVYSDEELERYMTFAVLVEPDHPILVDKFLENAVEVDVDAIADHTGNVVIGGIME- 785

Query: 198 DFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256
             +  +    S +S   +P + +   +   ++R      +A+   G+    F       +
Sbjct: 786 --HIEQAGIHSGDSACSIPTQSLSETVLATIRRQTIQLAKALNVVGLMNIQFAV--QGEQ 841

Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           V+ LE N +   T     P ++   G    ++
Sbjct: 842 VYILEANPRASRT----VPFVSKAIGIPLAKM 869


>gi|183219975|ref|YP_001837971.1| biotin carboxylase [Leptospira biflexa serovar Patoc strain 'Patoc
           1 (Paris)']
 gi|189910099|ref|YP_001961654.1| acetyl/propionyl-CoA carboxylase subunit alpha [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Ames)']
 gi|167774775|gb|ABZ93076.1| Acetyl/propionyl-CoA carboxylase, alpha subunit [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Ames)']
 gi|167778397|gb|ABZ96695.1| Biotin carboxylase (A subunit of acetyl-CoA carboxylase; ACC)
           [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Paris)']
          Length = 480

 Score = 78.2 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 47/241 (19%), Positives = 88/241 (36%), Gaps = 18/241 (7%)

Query: 34  SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDK 93
           S ++VD+ +   LA    D      +G   E+      LE   I +      +     DK
Sbjct: 61  SYLNVDKVIEACLA-TGADAVHPG-YGFLSENTDFAKKLEQHGISFIGPKPHSIEAMGDK 118

Query: 94  MRSKQVVSSCGVPVCPSILVNRFTM----DSQHLISPPYVIKPLKGGSSLGIIVIKKDQS 149
           + S+ +V+  GVPV P        M         I  P + K   GG   G+  I     
Sbjct: 119 IGSRILVAKSGVPVVPGYEGESQEMSVFKKEADKIGYPVMAKASAGGGGKGMRRINSSDE 178

Query: 150 IPLDLLQSSSWNH----GDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYEL 204
           +   +L +          D++L+E+Y+ +   +   + GD   ++              L
Sbjct: 179 LEAGILSAKREAMSAFGDDRILLEKYIVNPRHVEFQIFGDTQGNII-----HLHERDCSL 233

Query: 205 KYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
           +          PA   P  +  ++   A +A +A+   G    +F+    + + ++LE+N
Sbjct: 234 QRRHQKVVEETPAPNFPSSLKSKMAEAAVMAGKAVQYEGAGTVEFIL-GENGEFYFLEMN 292

Query: 264 V 264
            
Sbjct: 293 T 293


>gi|50842483|ref|YP_055710.1| carbamoyl phosphate synthase large subunit [Propionibacterium acnes
           KPA171202]
 gi|81826456|sp|Q6A914|CARB_PROAC RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|50840085|gb|AAT82752.1| carbamoyl-phosphate synthase large chain [Propionibacterium acnes
           KPA171202]
 gi|315105418|gb|EFT77394.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium
           acnes HL030PA1]
          Length = 1068

 Score = 78.2 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 43/297 (14%), Positives = 106/297 (35%), Gaps = 36/297 (12%)

Query: 24  SALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLV------ 68
            A++ AG++   +         D   S  L    L  +   NV+      DG++      
Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSISDKLYFEPLTFEDVMNVID-LEQPDGVIVQFGGQ 637

Query: 69  -----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ-- 121
                   L    +P   + +     + D+   + +++  G+P  P              
Sbjct: 638 TAINLAGPLSAAGVPILGTQVADLDRAEDREGFESLLAELGIPQAPGGTARSSEEAFAVA 697

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
             +  P +++P        + ++   + +   +  +   +    +L+++Y++G+E     
Sbjct: 698 EELGYPVLVRPSYVIGGRAMAIVTSAEELKRYMRDAVHASPDKPVLVDRYLNGLECEVDA 757

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGC 240
           + D     T++ +P    +       S +S  V P  ++   +   +  +     + +  
Sbjct: 758 ICDG----TDVLIPGIMEHIERAGVHSGDSMAVYPPQRMSQQVADRIIEVTTKLARGLKT 813

Query: 241 RGISRSDFLF--DPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +GI    F+   DP + +  V+ +E N +   T     P ++   G S  E+   ++
Sbjct: 814 KGILNIQFVVANDPATGEETVYVIEANPRASRT----VPFLSKVTGVSMAEVATRII 866



 Score = 69.0 bits (168), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 45/268 (16%), Positives = 99/268 (36%), Gaps = 30/268 (11%)

Query: 25  ALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNVLHGNFG 63
           AL++ G++V  ++        DR V                +L   +PD     L G  G
Sbjct: 36  ALKEEGYEVILVNSNPATIMTDRDVADKVYIEPITLEFVSSILRRERPDAIVPTLGGQTG 95

Query: 64  EDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
            +   +     I + L I    + + A   + D+   KQ++   G PV  S +V+     
Sbjct: 96  LNMATELAKSGIPDELGIELLGTKLSAIEKAEDRDLFKQLMDELGQPVPASEVVHTVDEA 155

Query: 120 SQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IE 176
            +  + I  P +++P       G  +   +  +   + +    +   + LIEQ + G  E
Sbjct: 156 VKVGNTIGYPLIVRPAYTLGGTGGGMCCDEAELVRIVGKGLELSPVTECLIEQSIAGFKE 215

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +   +M D + +   + V   + +     ++  +        +    ++ ++  +    +
Sbjct: 216 IEYEMMRDGADNT--MVVCTMENFDPVGVHTGDSIVFAPTQTLTDVEHEMLRDASIEIVR 273

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +G  G        DP S + + +E+N 
Sbjct: 274 TLGIEGGCNVQLALDPNSFQYYVIEVNP 301


>gi|330884072|gb|EGH18221.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. glycinea str.
           race 4]
          Length = 87

 Score = 78.2 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 24/83 (28%), Positives = 44/83 (53%), Gaps = 2/83 (2%)

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTMDSQHLISPPYVIKPLKGGSS 138
            SG+LASAL+MDK+R+KQV  S G+      ++      + +   +  P ++KP   GSS
Sbjct: 1   GSGVLASALAMDKLRTKQVWQSLGLATPLHAVLGNESDCICAATELGFPLIVKPAHEGSS 60

Query: 139 LGIIVIKKDQSIPLDLLQSSSWN 161
           +G+  +     +      +S+++
Sbjct: 61  IGMAKVNSVDELIAAWKAASTYD 83


>gi|299146014|ref|ZP_07039082.1| phosphoribosylglycinamide formyltransferase 2 [Bacteroides sp.
           3_1_23]
 gi|298516505|gb|EFI40386.1| phosphoribosylglycinamide formyltransferase 2 [Bacteroides sp.
           3_1_23]
          Length = 388

 Score = 78.2 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 46/255 (18%), Positives = 84/255 (32%), Gaps = 36/255 (14%)

Query: 31  FKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
           F++  +     +  V+    PD+    +     E         L +       ++ SA +
Sbjct: 45  FEIFDMLNGEELERVVKKHHPDIIVPEIEAIRTE--------RLYDFEKEGIQVVPSARA 96

Query: 91  MD-----KMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYVIKPLKGGSSLGIIV 143
           ++     K          G+               ++   I  P V+KPL   S  G  +
Sbjct: 97  VNFTMNRKAIRDLAAQELGLKTAKYFYAKTLEELKEAADKIGFPCVVKPLMSSSGKGQSL 156

Query: 144 IKKDQSIPLDLLQSSSWNHGD--QLLIEQYVDGIE----LTCGVMGDASLDVTEIA-VPK 196
           +K    +        S + GD  +L+IE+++        LT       +L    I  V K
Sbjct: 157 VKSADELEHAWEYGCSGSRGDIRELIIEEFIKFDSEITLLTVTQKNGPTLFCPPIGHVQK 216

Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256
              Y               PA I     KE + +A    +A+   G+   +F        
Sbjct: 217 GGDY----------RESFQPAHIDPAHLKEAEEMAEKVTRALTGAGLWGVEFFLS-HDNG 265

Query: 257 VFWLEINVQP---GM 268
           V++ E++ +P   GM
Sbjct: 266 VYFSELSPRPHDTGM 280


>gi|149370954|ref|ZP_01890549.1| pyruvate carboxylase [unidentified eubacterium SCB49]
 gi|149355740|gb|EDM44298.1| pyruvate carboxylase [unidentified eubacterium SCB49]
          Length = 1150

 Score = 78.2 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 39/243 (16%), Positives = 89/243 (36%), Gaps = 24/243 (9%)

Query: 35  QIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSM 91
            +D+D  + L L     D   + +H  +G   E+       +   I +            
Sbjct: 62  YLDIDAIIKLAL-----DKGVDAIHPGYGFLSENSNFARACKENGIIFIGPDPTVMDALG 116

Query: 92  DKMRSKQVVSSCGVPVC----PSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147
           DK+ +K++   C VP        +      ++    I  P ++K   GG   G+ VI + 
Sbjct: 117 DKIMAKKIAEKCNVPTINSNKKDLTTVEIALEEAKNIGYPVMLKAASGGGGRGMRVIHQP 176

Query: 148 QSIPL--DLLQSSSWNH--GDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSY 202
             +    D  ++ + N    D + +E+YV+    L   ++ D   ++             
Sbjct: 177 DDLEKSFDSAKNEALNSFGDDTMFLEKYVENPKHLEVQIVADNHGNI-----RHLFERDC 231

Query: 203 ELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
            ++        V P+  +  ++ + + + A    + +    +   +FL D     ++++E
Sbjct: 232 SVQRRHQKVVEVAPSFNVSQEVKEALYKYAIAIAEEVNYNNVGTVEFLVDQQDN-IYFIE 290

Query: 262 INV 264
           +N 
Sbjct: 291 VNP 293


>gi|1143222|gb|AAA85742.1| acetyl-CoA carboxylase biotin carboxylase subunit [Glycine max]
          Length = 289

 Score = 78.2 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 83/221 (37%), Gaps = 18/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     I     I +            DK+ +K+ +   GVPV P    
Sbjct: 70  AVHPGYGFLAENAKFSQICADHGIKFIGPTPDMINNMGDKITAKETMIKAGVPVVPGSGG 129

Query: 111 --ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
               + +    +++ +  P ++K   GG   G+ V+ ++  +         ++++    D
Sbjct: 130 LLESLEQAKDLAKNHVGYPVILKATAGGGGEGMRVVWEESELERAYNTAKAEAAASFKND 189

Query: 165 QLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            + +E++V+    +   V GD   +V  ++           K             +  ++
Sbjct: 190 GIYMEKFVEEPRHIEIQVAGDQYGNVCHLSERDCSIQRRHQK----LVEESPSPFMTDEL 245

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +++   A  A  AI    +   +FL D   R  +++E+N 
Sbjct: 246 REKMGAAAIKAASAINYESVGTIEFLVDKH-RNFYFMEMNT 285


>gi|314962836|gb|EFT06936.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium
           acnes HL082PA1]
          Length = 1068

 Score = 78.2 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 43/297 (14%), Positives = 106/297 (35%), Gaps = 36/297 (12%)

Query: 24  SALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLV------ 68
            A++ AG++   +         D   S  L    L  +   NV+      DG++      
Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSISDKLYFEPLTFEDVMNVID-LEQPDGVIVQFGGQ 637

Query: 69  -----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ-- 121
                   L    +P   + +     + D+   + +++  G+P  P              
Sbjct: 638 TAINLAGPLSAAGVPILGTQVADLDRAEDREGFESLLAELGIPQAPGGTARSSEEAFAVA 697

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
             +  P +++P        + ++   + +   +  +   +    +L+++Y++G+E     
Sbjct: 698 EELGYPVLVRPSYVIGGRAMAIVTSAEELKRYMRDAVHASPDKPVLVDRYLNGLECEVDA 757

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGC 240
           + D     T++ +P    +       S +S  V P  ++   +   +  +     + +  
Sbjct: 758 ICDG----TDVLIPGIMEHIERAGVHSGDSMAVYPPQRMSQQVADRIIEVTTKLARGLKT 813

Query: 241 RGISRSDFLF--DPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +GI    F+   DP + +  V+ +E N +   T     P ++   G S  E+   ++
Sbjct: 814 KGILNIQFVVANDPATGEETVYVIEANPRASRT----VPFLSKVTGVSMAEVATRII 866



 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 46/268 (17%), Positives = 99/268 (36%), Gaps = 30/268 (11%)

Query: 25  ALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNVLHGNFG 63
           AL++ G++V  ++        DR V                +L   +PD     L G  G
Sbjct: 36  ALKEEGYEVILVNSNPATIMTDRDVADKVYIEPITLEFVSSILRRERPDAIVPTLGGQTG 95

Query: 64  EDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
            +   +     IL+ L I      + A   + D+   KQ++   G PV  S +V+     
Sbjct: 96  LNMATELAKSGILDELGIELLGIKLSAIEKAEDRDLFKQLMDELGQPVPASEVVHTVDEA 155

Query: 120 SQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IE 176
            +  + I  P +++P       G  +   +  +   + +    +   + LIEQ + G  E
Sbjct: 156 VKVGNTIGYPLIVRPAYTLGGTGGGMCCDEAELVRIVGKGLELSPVTECLIEQSIAGFKE 215

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +   +M D + +   + V   + +     ++  +        +    ++ ++  +    +
Sbjct: 216 IEYEMMRDGADNT--MVVCTMENFDPVGVHTGDSIVFAPTQTLTDVEHEMLRDASIEIVR 273

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +G  G        DP S + + +E+N 
Sbjct: 274 TLGIEGGCNVQLALDPNSFQYYVIEVNP 301


>gi|326779198|ref|ZP_08238463.1| Methylcrotonoyl-CoA carboxylase., Pyruvate carboxylase
           [Streptomyces cf. griseus XylebKG-1]
 gi|326659531|gb|EGE44377.1| Methylcrotonoyl-CoA carboxylase., Pyruvate carboxylase
           [Streptomyces cf. griseus XylebKG-1]
          Length = 648

 Score = 78.2 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 83/221 (37%), Gaps = 17/221 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---- 109
            +H  +G   E+           + +      A +L  DK+R+K+ V++ GVPV P    
Sbjct: 80  AVHPGYGFLAENAEFARACTDAGLVFIGPPAAAISLMGDKIRAKETVAAYGVPVVPGSSG 139

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
           S L +    ++   I  P ++KP  GG   G+ +++    +  ++  +          D 
Sbjct: 140 SGLTDAQLEEAAREIGTPVLLKPSAGGGGKGMRLVRDAAVLGEEIAAARREARASFGDDT 199

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           LL+E+++D    +   V+ D   +V  +   +        K             +     
Sbjct: 200 LLVERWIDRPRHIEIQVLADTHGNVIHLGERECSLQRRHQKII----EEAPSVLLDAKTR 255

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLS-RKVFWLEINV 264
             +   A  A ++ G  G    +F+         +++E+N 
Sbjct: 256 AAMGEAAVQAARSCGYVGAGTVEFIVPGNDPASYYFMEMNT 296


>gi|293607010|ref|ZP_06689354.1| carbamoyl-phosphate synthase, large subunit [Achromobacter
           piechaudii ATCC 43553]
 gi|292814607|gb|EFF73744.1| carbamoyl-phosphate synthase, large subunit [Achromobacter
           piechaudii ATCC 43553]
          Length = 1080

 Score = 78.2 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 44/298 (14%), Positives = 107/298 (35%), Gaps = 35/298 (11%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ------ 69
           AL + G++   +         D D S  L    L  +    ++H       +VQ      
Sbjct: 589 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVHKENPVGMIVQYGGQTP 648

Query: 70  ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL-- 123
                 LE   +P   +   +  ++ D+ R +++++  G+   P+           H   
Sbjct: 649 LKLARALEANGVPIIGTSPESIDVAEDRERFQKLLNKLGLRQPPNRTARTEGEALAHATE 708

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVM 182
           I  P V++P        + ++ + Q +   + ++   ++   +L+++++ +  E+    +
Sbjct: 709 IGYPLVVRPSYVLGGRAMEIVHEQQDLERYMREAVKVSNDSPVLLDRFLNNATEVDVDCL 768

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D         +   +       +S  ++  + P  +  ++  E++R   +  +A+   G
Sbjct: 769 ADGETVFIGGVMEHIEQAGV---HSGDSACSLPPYSLSAEVIAEIKRQTTMMAKALNVSG 825

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           +    F        V+ LE+N +   T     P ++   G      L  +   A   R
Sbjct: 826 LMNVQFAI--QGGDVYVLEVNPRASRT----VPYVSKATGLQ----LAKIAARAMAGR 873



 Score = 56.3 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 46/285 (16%), Positives = 99/285 (34%), Gaps = 42/285 (14%)

Query: 18  SGKACASALEDAGF-------------------KVSQIDVD--RSVGLVLAHLKPDLAFN 56
           SG     AL+  G+                    V+ I+    ++V  ++   KPD    
Sbjct: 29  SGAQACKALKAEGYRTILVNSNPATIMTDPETADVTYIEPITWQAVEKIIEREKPDALLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      +L+   +    +   A   + D+ + KQ ++  G+    S +
Sbjct: 89  TMGGQTALNCALDLAHNGVLKKHNVELIGANEHAIEKAEDRQKFKQAMTDIGLESAKSGV 148

Query: 113 VNRFTMDSQ---------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
            +      +              P VI+P       G  +    +       +    +  
Sbjct: 149 AHSMDEAWEVQRRIAVEVGTSGFPAVIRPSFTMGGSGGGIAYNAEEFETICRRGLEASPT 208

Query: 164 DQLLIEQYVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IP 220
           ++LLIE+ + G  E    V+ D + + +   ++   D           +S  V PA+ + 
Sbjct: 209 NELLIEESLLGWKEFEMVVVRDKADNCIIVCSIENLDPMGVHT----GDSITVAPAQTLT 264

Query: 221 LDIYKEVQRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
              Y+ ++  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 DKEYQIMRNASIAVLREIGVDTGGSNVQFAVNPKNGRMIVIEMNP 309


>gi|213422359|ref|ZP_03355425.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Typhi str. E01-6750]
          Length = 84

 Score = 77.9 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 15/76 (19%), Positives = 37/76 (48%), Gaps = 2/76 (2%)

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            + +  +  P  +KP   GSS+G+  +  +      +  +  ++H  ++++EQ + G E+
Sbjct: 8   AEVESRLGLPLFVKPANQGSSVGVSKVANEAQYQQAVALAFEFDH--KVVVEQGIKGREI 65

Query: 178 TCGVMGDASLDVTEIA 193
            C V+G+ +   +   
Sbjct: 66  ECAVLGNDNPQASTCG 81


>gi|239979567|ref|ZP_04702091.1| acetyl/propionyl CoA carboxylase alpha subunit [Streptomyces albus
           J1074]
 gi|291451436|ref|ZP_06590826.1| acetyl/propionyl CoA carboxylase alpha subunit [Streptomyces albus
           J1074]
 gi|291354385|gb|EFE81287.1| acetyl/propionyl CoA carboxylase alpha subunit [Streptomyces albus
           J1074]
          Length = 675

 Score = 77.9 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 41/221 (18%), Positives = 84/221 (38%), Gaps = 17/221 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---- 109
            +H  +G   E+           + +      A AL  DK+R+K+ V + GVPV P    
Sbjct: 77  AVHPGYGFLAENAAFARACAEEGLVFIGPPADAIALMGDKIRAKETVRAAGVPVVPGSSG 136

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
           S L +     +   I  P ++KP  GG   G+ +++++ ++  ++  +          D 
Sbjct: 137 SGLTDAELAAAAREIGMPVLLKPSAGGGGKGMRLVREEAALAEEIAAARREARASFGDDT 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           LL+E+++D    +   V+ D   +V  +   +        K             +     
Sbjct: 197 LLVERWIDRPRHIEIQVLADGHGNVVHLGERECSLQRRHQKI----VEEAPSVLLDEATR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF-WLEINV 264
             +   A  A ++ G  G    +F+        + ++E+N 
Sbjct: 253 AAMGEAAVQAARSCGYTGAGTVEFIVPGDDPAGYCFMEMNT 293


>gi|229192155|ref|ZP_04319123.1| Pyruvate carboxylase [Bacillus cereus ATCC 10876]
 gi|228591362|gb|EEK49213.1| Pyruvate carboxylase [Bacillus cereus ATCC 10876]
          Length = 1148

 Score = 77.9 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 31/243 (12%), Positives = 83/243 (34%), Gaps = 21/243 (8%)

Query: 35  QIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSM 91
            ID    +  ++   K +   + +H  +G   E+       E   I +         +  
Sbjct: 62  PIDAYLDIEGIIEIAKSNHV-DAIHPGYGFLSENIQFAKRCEEEGIIFIGPKSKHLDMFG 120

Query: 92  DKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147
           DK++++       +PV P     +               P +IK   GG   G+ +++  
Sbjct: 121 DKVKARTQAQLAQIPVIPGSDGPVNSLEEVEKFAEKYDYPIIIKASLGGGGRGMRIVRTS 180

Query: 148 QSIPL----DLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSY 202
           + +         ++ +    D++ +E++V+    +   ++ D   +V  +          
Sbjct: 181 EELGESYNRAKSEAKAAFGNDEVYVEKFVEKPKHIEVQILADEEGNVVHLYE-----RDC 235

Query: 203 ELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
            ++        + P   +  D+ + +   A    + +        +FL      + +++E
Sbjct: 236 SVQRRHQKVVEIAPSVSLSDDLRQRICDAAVKLTKNVNYLNAGTVEFLV--KDDEFYFIE 293

Query: 262 INV 264
           +N 
Sbjct: 294 VNP 296


>gi|139473990|ref|YP_001128706.1| carbamoyl phosphate synthase large subunit [Streptococcus pyogenes
           str. Manfredo]
 gi|167006450|sp|A2RF60|CARB_STRPG RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|134272237|emb|CAM30489.1| carbamoyl-phosphate synthase large chain [Streptococcus pyogenes
           str. Manfredo]
          Length = 1058

 Score = 77.9 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/292 (12%), Positives = 100/292 (34%), Gaps = 32/292 (10%)

Query: 24  SALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH-----G---NFGEDG 66
            A++ AG++   +         D   S  L    L  +   NV+      G    FG   
Sbjct: 579 KAIQKAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIDLEQPKGVIVQFGGQT 638

Query: 67  LV---QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQ 121
            +   Q++ +   +    + +     + D+   ++ +   G+P             +++ 
Sbjct: 639 AINLAQSLSD-AGVTILGTQVEDLDRAEDRDLFEKALKELGIPQPQGQTATNEEEALEAA 697

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
             I  P +++P        + +++  + +   +  +   +    +L++ Y+ G E     
Sbjct: 698 KKIGFPVLVRPSYVLGGRAMEIVENKEDLREYIRTAVKASPEHPILVDSYIFGKECEVDA 757

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241
           + D    +    +   +       +S  +     P ++   I + +          + C 
Sbjct: 758 ISDGKSVLIPGIMEHIERAGV---HSGDSMAVYPPQQLSKQIQETIAEYTKRLAIGLNCI 814

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           G+    F+    + +V+ +E+N +   T     P ++   G    ++   ++
Sbjct: 815 GMMNVQFVI--KNEQVYVIEVNPRASRT----VPFLSKVTGIPMAQIATKLI 860



 Score = 69.8 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 50/296 (16%), Positives = 107/296 (36%), Gaps = 34/296 (11%)

Query: 25  ALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNVLHGNFG 63
           AL++ G+KV  ++        D+ +                ++   +PD     L G  G
Sbjct: 36  ALKEEGYKVILVNSNPATIMTDKEIADKVYIEPLTLEFVNRIIRKERPDAILPTLGGQTG 95

Query: 64  EDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFT 117
            +  +      IL+ LEI    + + A   + D+   KQ++     P+  S +V      
Sbjct: 96  LNMAMALSKAGILDDLEIELLGTKLSAIDQAEDRDLFKQLMQELDQPIPESTIVKTVDEA 155

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IE 176
           +     I  P +++P       G  +   ++ +          +   Q LIE+ + G  E
Sbjct: 156 VTFARDIGYPVIVRPAFTLGGTGGGICSSEEELCEITENGLKLSPVTQCLIERSIAGFKE 215

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +   VM D++ +   + V   + +     ++  +        +     + ++  +    +
Sbjct: 216 IEYEVMRDSADNA--LVVCNMENFDPVGIHTGDSIVFAPTQTLSDIENQMLRDASLKIIR 273

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           A+   G        DP S K + +E+N  P ++  S     +   GY   +L   +
Sbjct: 274 ALKIEGGCNVQLALDPYSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAKI 325


>gi|330971275|gb|EGH71341.1| 3-methylcrotonyl-CoA carboxylase alpha subunit [Pseudomonas
           syringae pv. aceris str. M302273PT]
          Length = 649

 Score = 77.9 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 76/221 (34%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      +E   + +      A      K  +K ++   GVP+ P    
Sbjct: 81  AIHPGYGFLSENADFARAVEDAGLIFLGPPASAIDAMGSKSAAKALMEQAGVPLVPGYHG 140

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
               ++    +   I  P ++K   GG   G+ V++    +   L  +           +
Sbjct: 141 EAQDVETFRAAAERIGYPVLLKATAGGGGKGMKVVEHTGELAEALASAQREALSSFGDAR 200

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           +L+E+YV     +   V  D       +            K          PA  +   +
Sbjct: 201 MLVEKYVLTPRHVEIQVFADRHGYCLYLNERDCSIQRRHQK-----VVEEAPAPGLTASL 255

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            K +   A  A QAIG  G    +FL D    + F++E+N 
Sbjct: 256 RKAMGEAAVKAAQAIGYVGAGTVEFLLDAR-GEFFFMEMNT 295


>gi|182438551|ref|YP_001826270.1| putative acetyl/propionyl CoA carboxylase alpha subunit
           [Streptomyces griseus subsp. griseus NBRC 13350]
 gi|178467067|dbj|BAG21587.1| putative acetyl/propionyl CoA carboxylase alpha subunit
           [Streptomyces griseus subsp. griseus NBRC 13350]
          Length = 652

 Score = 77.9 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 83/221 (37%), Gaps = 17/221 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---- 109
            +H  +G   E+           + +      A +L  DK+R+K+ V++ GVPV P    
Sbjct: 84  AVHPGYGFLAENAEFARACTDAGLVFIGPPAAAISLMGDKIRAKETVAAYGVPVVPGSSG 143

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
           S L +    ++   I  P ++KP  GG   G+ +++    +  ++  +          D 
Sbjct: 144 SGLTDAQLEEAAREIGTPVLLKPSAGGGGKGMRLVRDAAVLGEEIAAARREARASFGDDT 203

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           LL+E+++D    +   V+ D   +V  +   +        K             +     
Sbjct: 204 LLVERWIDRPRHIEIQVLADTHGNVIHLGERECSLQRRHQKII----EEAPSVLLDAKTR 259

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLS-RKVFWLEINV 264
             +   A  A ++ G  G    +F+         +++E+N 
Sbjct: 260 AAMGEAAVQAARSCGYVGAGTVEFIVPGNDPASYYFMEMNT 300


>gi|42783042|ref|NP_980289.1| pyruvate carboxylase [Bacillus cereus ATCC 10987]
 gi|42738969|gb|AAS42897.1| pyruvate carboxylase [Bacillus cereus ATCC 10987]
          Length = 1148

 Score = 77.9 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 31/243 (12%), Positives = 83/243 (34%), Gaps = 21/243 (8%)

Query: 35  QIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSM 91
            ID    +  ++   K +   + +H  +G   E+       E   I +         +  
Sbjct: 62  PIDAYLDIEGIIEIAKSNHV-DAIHPGYGFLSENIQFAKRCEEEGIIFIGPKSKHLDMFG 120

Query: 92  DKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147
           DK++++       +PV P     +       +       P +IK   GG   G+ +++  
Sbjct: 121 DKVKARTQAQLAQIPVIPGSDGPVDSLEEVEEFAEKYDYPIIIKASLGGGGRGMRIVRTS 180

Query: 148 QSIPL----DLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSY 202
           + +         ++ +    D++ +E++V+    +   ++ D   +V  +          
Sbjct: 181 EELRESYNRAKSEAKAAFGNDEVYVEKFVEKPKHIEVQILADEEGNVVHLYE-----RDC 235

Query: 203 ELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
            ++        + P   +  D+ + +   A    + +        +FL        +++E
Sbjct: 236 SVQRRHQKVVEIAPSVSLSDDLRQRICDAAVKLTKNVNYLNAGTVEFLV--KDDNFYFIE 293

Query: 262 INV 264
           +N 
Sbjct: 294 VNP 296


>gi|329890100|ref|ZP_08268443.1| acetyl-CoA carboxylase, biotin carboxylase [Brevundimonas diminuta
           ATCC 11568]
 gi|328845401|gb|EGF94965.1| acetyl-CoA carboxylase, biotin carboxylase [Brevundimonas diminuta
           ATCC 11568]
          Length = 450

 Score = 77.9 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 84/220 (38%), Gaps = 18/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     I+E   + +         +  DK+ +KQ V   G+PV P    
Sbjct: 77  AIHPGYGFLSENARFAEIVEAHGLAFIGPKPEHIRVMGDKITAKQTVKDAGIPVVPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
            +      +++   I  P ++K   GG   G+ V      +   +     ++ +      
Sbjct: 137 EVETVEQAIEASKTIGFPLIVKAAAGGGGRGMKVAMTADDLVEAVQTAQSEALAAFGNGA 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+Y+     +   V+ D+  +V  +        S + ++  +      PA +  +  
Sbjct: 197 VYMERYLQKPRHIEIQVIADSHGNVVHLGERD---CSLQRRHQKVLEEAPSPA-LSAEGR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            ++      A  AIG  G    +FL+     + F++E+N 
Sbjct: 253 AKIGETVNKAIAAIGYLGAGTIEFLW--EDGEFFFIEMNT 290


>gi|229174615|ref|ZP_04302143.1| Pyruvate carboxylase [Bacillus cereus MM3]
 gi|228608817|gb|EEK66111.1| Pyruvate carboxylase [Bacillus cereus MM3]
          Length = 1148

 Score = 77.9 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 31/243 (12%), Positives = 84/243 (34%), Gaps = 21/243 (8%)

Query: 35  QIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSM 91
            ID    +  ++   K +   + +H  +G   E+       E   I +         +  
Sbjct: 62  PIDAYLDIEGIIEIAKSNHV-DAIHPGYGFLSENIQFAKRCEEEGIIFIGPKSKHLDMFG 120

Query: 92  DKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147
           DK++++       +PV P     +       +       P +IK   GG   G+ +++  
Sbjct: 121 DKVKARTQAQLAQIPVIPGSDGPVNSVEEVGEFAEKYDYPIIIKASLGGGGRGMRIVRSS 180

Query: 148 QSIPL----DLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSY 202
           + +         ++ +    D++ +E++V+    +   ++ D   +V  +          
Sbjct: 181 EELRESYNRAKSEAKAAFGNDEVYVEKFVEKPKHIEVQILADEEGNVVHLYE-----RDC 235

Query: 203 ELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
            ++        + P   +  D+ + +   A    + +        +FL      + +++E
Sbjct: 236 SVQRRHQKVVEIAPSVSLSDDLRQRICDAAVKLTKNVNYLNAGTVEFLV--KGDEFYFIE 293

Query: 262 INV 264
           +N 
Sbjct: 294 VNP 296


>gi|71083429|ref|YP_266148.1| biotin carboxylase [Candidatus Pelagibacter ubique HTCC1062]
 gi|71062542|gb|AAZ21545.1| biotin carboxylase [Candidatus Pelagibacter ubique HTCC1062]
          Length = 445

 Score = 77.9 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 81/221 (36%), Gaps = 21/221 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---- 109
            +H  +G   E+     +LE   I +  +      +  DK+++K++    G+PV      
Sbjct: 77  AVHPGYGFLSENANFAKVLEENNIKFIGASSKLIEMMGDKIQAKKIAKEHGLPVIEGSEG 136

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSWNHGDQ 165
            I   +   +    I  P +IK   GG   G+ +++K++           ++  +   D+
Sbjct: 137 GITDVKTAKELCKKIGFPVLIKASAGGGGKGMKIVRKEEEFETLFSTAKSEAQKYFGNDE 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           + IE++  +   +   V+   +                 ++          P+  +   I
Sbjct: 197 IYIEKFFQNPRHIEVQVLSGKN------RTVHLHERDCSVQRRHQKLIEETPSPVLTDQI 250

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            K++          IG  G    +F++     K ++LE+N 
Sbjct: 251 RKDLFERTVNMVSKIGYEGAGTVEFIY--EDGKFYFLEMNT 289


>gi|298717387|ref|YP_003730029.1| UreA amidolyase-related protein [Pantoea vagans C9-1]
 gi|298361576|gb|ADI78357.1| UreA amidolyase-related protein [Pantoea vagans C9-1]
          Length = 1201

 Score = 77.9 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 33/234 (14%), Positives = 78/234 (33%), Gaps = 27/234 (11%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---QHLISPPYVIKP 132
            + +             K  ++ +  + GVP+     +     ++      +  P ++K 
Sbjct: 99  GLIFVGPTPQQLRTFGLKHTARALAKAEGVPLLEGSELLADVSEARRAAERVGYPVMLKS 158

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQLLIEQYVD-GIELTCGVMGDASL 187
             GG  +G+ V      +                   + +E+Y++    L   + GD   
Sbjct: 159 TAGGGGIGMRVCGDANELSDAFETVQRLGQNNFSDAGVFLEKYIERARHLEVQIFGDGKG 218

Query: 188 DVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           +V  + V          K             +P  + + +   A    +A+  R     +
Sbjct: 219 EVIALGVRDCSVQRRNQK----VIEETPAPNLPAGMAEALCSAAIALGKAVNYRSAGTVE 274

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR----ELLLWMVEDAS 297
           F++D  + + ++LE+N             +    G + +    +L+ WM+E A+
Sbjct: 275 FVYDSAALQFYFLEVNT-----------RLQVEHGVTEQVWGVDLVKWMIELAA 317


>gi|228960209|ref|ZP_04121866.1| Pyruvate carboxylase [Bacillus thuringiensis serovar pakistani str.
           T13001]
 gi|228799477|gb|EEM46437.1| Pyruvate carboxylase [Bacillus thuringiensis serovar pakistani str.
           T13001]
          Length = 1148

 Score = 77.9 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 31/243 (12%), Positives = 83/243 (34%), Gaps = 21/243 (8%)

Query: 35  QIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSM 91
            ID    +  ++   K +   + +H  +G   E+       E   I +         +  
Sbjct: 62  PIDAYLDIEGIIEIAKSNHV-DAIHPGYGFLSENIQFAKRCEEEGIIFIGPKSKHLDMFG 120

Query: 92  DKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147
           DK++++       +PV P     +               P +IK   GG   G+ +++  
Sbjct: 121 DKVKARTQAQLAQIPVIPGSDGPVNSLEEVEKFAEKYDYPIIIKASLGGGGRGMRIVRTS 180

Query: 148 QSIPL----DLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSY 202
           + +         ++ +    D++ +E++V+    +   ++ D   +V  +          
Sbjct: 181 EELGESYNRAKSEAKAAFGNDEVYVEKFVEKPKHIEVQILADEEGNVVHLYE-----RDC 235

Query: 203 ELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
            ++        + P   +  D+ + +   A    + +        +FL      + +++E
Sbjct: 236 SVQRRHQKVVEIAPSVSLSDDLRQRICDAAVKLTKNVNYLNAGTVEFLV--KDDEFYFIE 293

Query: 262 INV 264
           +N 
Sbjct: 294 VNP 296


>gi|229071446|ref|ZP_04204668.1| Pyruvate carboxylase [Bacillus cereus F65185]
 gi|228711737|gb|EEL63690.1| Pyruvate carboxylase [Bacillus cereus F65185]
          Length = 1148

 Score = 77.9 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 31/243 (12%), Positives = 83/243 (34%), Gaps = 21/243 (8%)

Query: 35  QIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSM 91
            ID    +  ++   K +   + +H  +G   E+       E   I +         +  
Sbjct: 62  PIDAYLDIEGIIEIAKSNHV-DAIHPGYGFLSENIQFAKRCEEEGIIFIGPKSKHLDMFG 120

Query: 92  DKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147
           DK++++       +PV P     +               P +IK   GG   G+ +++  
Sbjct: 121 DKVKARTQAQLAQIPVIPGSDGPVNSLEEVEKFAEKYDYPIIIKASLGGGGRGMRIVRTS 180

Query: 148 QSIPL----DLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSY 202
           + +         ++ +    D++ +E++V+    +   ++ D   +V  +          
Sbjct: 181 EELGESYNRAKSEAKAAFGNDEVYVEKFVEKPKHIEVQILADEEGNVVHLYE-----RDC 235

Query: 203 ELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
            ++        + P   +  D+ + +   A    + +        +FL      + +++E
Sbjct: 236 SVQRRHQKVVEIAPSVSLSDDLRQRICDAAVKLTKNVNYLNAGTVEFLV--KDDEFYFIE 293

Query: 262 INV 264
           +N 
Sbjct: 294 VNP 296


>gi|15606668|ref|NP_214048.1| pyruvate carboxylase N-terminal domain-containing protein [Aquifex
           aeolicus VF5]
 gi|2983895|gb|AAC07446.1| pyruvate carboxylase n-terminal domain [Aquifex aeolicus VF5]
          Length = 472

 Score = 77.9 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 86/221 (38%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     + E   I +         L  DK RSK+V+   GVPV P    
Sbjct: 76  AIHPGYGFLAENAEFAKMCEEAGITFIGPHWKVIELMGDKARSKEVMKKAGVPVVPGSDG 135

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS-----SWNHGD 164
            +            I  P ++K   GG   GI + + ++ +  +  Q+S     ++  GD
Sbjct: 136 VLKSLEEAKALAREIGYPVLLKATAGGGGRGIRICRNEEELVKNYEQASREAEKAFGRGD 195

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            LL+E++++    +   V+GD   +V  +            K   +  + +    +  + 
Sbjct: 196 -LLLEKFIENPKHIEYQVLGDKHGNVIHLGERDCSIQRRNQKLVEIAPSLI----LTPEK 250

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +    +   A + IG       +F+ D     ++++E+N 
Sbjct: 251 REYYGNIVTKAAKEIGYYNAGTMEFIADQEGN-LYFIEMNT 290


>gi|47169244|pdb|1ULZ|A Chain A, Crystal Structure Of The Biotin Carboxylase Subunit Of
           Pyruvate Carboxylase
          Length = 451

 Score = 77.9 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 86/221 (38%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     + E   I +         L  DK RSK+V+   GVPV P    
Sbjct: 76  AIHPGYGFLAENAEFAKMCEEAGITFIGPHWKVIELMGDKARSKEVMKKAGVPVVPGSDG 135

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS-----SWNHGD 164
            +            I  P ++K   GG   GI + + ++ +  +  Q+S     ++  GD
Sbjct: 136 VLKSLEEAKALAREIGYPVLLKATAGGGGRGIRICRNEEELVKNYEQASREAEKAFGRGD 195

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            LL+E++++    +   V+GD   +V  +            K   +  + +    +  + 
Sbjct: 196 -LLLEKFIENPKHIEYQVLGDKHGNVIHLGERDCSIQRRNQKLVEIAPSLI----LTPEK 250

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +    +   A + IG       +F+ D     ++++E+N 
Sbjct: 251 REYYGNIVTKAAKEIGYYNAGTMEFIADQEGN-LYFIEMNT 290


>gi|84686422|ref|ZP_01014316.1| methylcrotonyl-CoA carboxylase, alpha subunit [Maritimibacter
           alkaliphilus HTCC2654]
 gi|84665605|gb|EAQ12081.1| methylcrotonyl-CoA carboxylase, alpha subunit [Rhodobacterales
           bacterium HTCC2654]
          Length = 649

 Score = 77.9 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 43/224 (19%), Positives = 79/224 (35%), Gaps = 23/224 (10%)

Query: 58  LHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
           +H  +G   E+      +E   + +      A      K  +K+++   GVPV P     
Sbjct: 78  IHPGYGFLSENPDFVEAVEAAGLTFIGPSAKAIRAMGLKDAAKKLMEEAGVPVVPGYHGA 137

Query: 115 RFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQL 166
             + D        I  P +IK + GG   G+ ++++       L  + S          +
Sbjct: 138 DQSDDLLANEADKIGYPVLIKAVAGGGGKGMRLVERAGDFADALASARSEAKTAFGNPDV 197

Query: 167 LIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIY 224
           LIE++V     +   V GD +  V              L+          PA  +  ++ 
Sbjct: 198 LIEKFVTSPRHIEVQVFGDGTEAVHLYE------RDCSLQRRHQKVIEEAPAPGMTQEMR 251

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSR----KVFWLEINV 264
             +   A  A +AIG  G    +F+ D          +++E+N 
Sbjct: 252 AAMGEAAVRAAEAIGYAGAGTVEFIVDGSDGLRPDGFWFMEMNT 295


>gi|291519738|emb|CBK74959.1| carbamoyl-phosphate synthase, large subunit [Butyrivibrio
           fibrisolvens 16/4]
          Length = 1066

 Score = 77.9 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 32/228 (14%), Positives = 81/228 (35%), Gaps = 19/228 (8%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTMDSQHLISPPYV 129
           L  + +P   +       + D+    +++    +P      +       +  + +  P +
Sbjct: 648 LMKIGVPILGTKAEDVDAAEDRELFDEILEKTQIPRAAGGTVFTAEEAKEVANRLGYPVL 707

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS--- 186
           ++P       G+ +   D  I   +   +       +L+++Y+ G E+    + D     
Sbjct: 708 VRPSYVLGGQGMQIAFNDDEIEKFMDIINQIAQDHPILVDKYLQGKEIEVDAICDGENIL 767

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISR 245
           +      + ++  +S        +S  V PA  I  DI  ++        +A+   G+  
Sbjct: 768 IPGIMEHIERTGIHS-------GDSISVYPAHTISQDIKDKIVDYTERLAKALHVLGMIN 820

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
             F+   +  +V+ +E+N +   T     P ++   G    +L    +
Sbjct: 821 IQFI--AMDGEVYVIEVNPRSSRT----VPYISKVTGIPIVDLAAKAI 862



 Score = 61.3 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 42/241 (17%), Positives = 85/241 (35%), Gaps = 12/241 (4%)

Query: 31  FKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILA 86
            +   +DV   +  ++   KPD     L G  G +  ++      LE   +    +    
Sbjct: 66  IEPLTVDV---LKQIIIKEKPDSLLPTLGGQAGLNLGMELAESGFLEEQGVKLIGTTAET 122

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVI 144
              + D+   K  +   G PV  S++VN     +   + I  P V++P       G  + 
Sbjct: 123 IFRAEDRQAFKDTMEKLGEPVAASLVVNTVEDGIKFTNTIGYPVVLRPAYTLGGSGGGIA 182

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYE 203
                +   L      +   ++L+E+ + G  E+   VM DA+ +   I V   +     
Sbjct: 183 HNQTELVEILTNGLRLSRVHEVLVERCIAGWKEIEYEVMRDANGN--CITVCNMENIDPV 240

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
             ++  +        +    Y+ ++  A      +G  G     +   P S +   +E+N
Sbjct: 241 GVHTGDSIVVAPSQTLGDKEYQMLRTSALRIIDELGITGGCNVQYALHPESFEYCVIEVN 300

Query: 264 V 264
            
Sbjct: 301 P 301


>gi|261367668|ref|ZP_05980551.1| putative carbamoyl-phosphate synthase large chain [Subdoligranulum
           variabile DSM 15176]
 gi|282570460|gb|EFB75995.1| putative carbamoyl-phosphate synthase large chain [Subdoligranulum
           variabile DSM 15176]
          Length = 379

 Score = 77.9 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 33/197 (16%), Positives = 79/197 (40%), Gaps = 19/197 (9%)

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV-NRFTMDSQHLISPPYVIK 131
           E + +P   + +     S +K + ++  ++ G P   S+L+  +  +     +  P ++K
Sbjct: 85  EAMGLP--GNSMRCCEKSTNKHKMREAFAAAGDPSPRSVLIGPKTELSVLEGMQYPLIVK 142

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P     S GI  + +   +   ++++   +     L+E++  G E +   +         
Sbjct: 143 PTDRSGSRGITEVNRPAGLQAAIVRAREQSFEKMALVEEFATGQEYSVECISWQG----- 197

Query: 192 IAVPKSDFYSYELKYSSL-----NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR-GISR 245
               +       LKY++       + H+ PA +   + ++V++  F A   +  + G S 
Sbjct: 198 ----EHHLLQITLKYTTGAPMYIETGHMEPAPLSDAMREKVRKTVFHALDTLEIQNGASH 253

Query: 246 SDFLFDPLSRKVFWLEI 262
           S+   D     +  +EI
Sbjct: 254 SELKIDESGN-IRLIEI 269


>gi|225165015|ref|ZP_03727220.1| D-alanine--D-alanine ligase [Opitutaceae bacterium TAV2]
 gi|224800369|gb|EEG18760.1| D-alanine--D-alanine ligase [Opitutaceae bacterium TAV2]
          Length = 83

 Score = 77.9 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 22/75 (29%), Positives = 30/75 (40%), Gaps = 12/75 (16%)

Query: 234 AHQAIGCRGISRSDFLFDPL------------SRKVFWLEINVQPGMTPVSIFPEMAAYA 281
           A  A   R  +R DF+                +  ++ LEIN  PGM   S+ P  A  A
Sbjct: 1   ACAACQVRDYARVDFILCDTPASPLSACEQNGNNSLYLLEINTLPGMKETSLLPMSARCA 60

Query: 282 GYSFRELLLWMVEDA 296
           G  F  L+  +V  A
Sbjct: 61  GLDFTALVRELVRPA 75


>gi|72161351|ref|YP_289008.1| acetyl/propionyl CoA carboxylase alpha subunit: biotin carboxylase
           [Thermobifida fusca YX]
 gi|71915083|gb|AAZ54985.1| putative acetyl/propionyl CoA carboxylase alpha subunit: biotin
           carboxylase [Thermobifida fusca YX]
          Length = 696

 Score = 77.9 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 39/224 (17%), Positives = 77/224 (34%), Gaps = 20/224 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
           ++H  +G   E+           + +      + A   DK+R+KQ V++ GVPV P    
Sbjct: 81  LIHPGYGFLAENAGFARACTAAGLVFVGPTPDSIAAMGDKIRAKQTVAAAGVPVLPGFAE 140

Query: 114 NRFT-------MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH---- 162
           +            +   I  P ++KP  GG   G+ ++     +      +         
Sbjct: 141 DPGHPLSATDLTAAAAQIGYPLLLKPSAGGGGKGMRLVHSPDELADAAAAARREARAAFG 200

Query: 163 GDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL 221
              LL E+YV     +   ++ D    +  +   +        K             +  
Sbjct: 201 DATLLAERYVARPRHIEVQILADTHGTIVHLGERECSLQRRHQKI----VEEAPSPLLTP 256

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLF-DPLSRKVFWLEINV 264
           +    + + A  A +A G  G    +F+     + + F+LE+N 
Sbjct: 257 EQRNAMGQAAVAAARACGYVGAGTVEFIVPGDDTDRFFFLEMNT 300


>gi|228954223|ref|ZP_04116251.1| Pyruvate carboxylase [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
 gi|228805543|gb|EEM52134.1| Pyruvate carboxylase [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
          Length = 1148

 Score = 77.9 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 31/243 (12%), Positives = 83/243 (34%), Gaps = 21/243 (8%)

Query: 35  QIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSM 91
            ID    +  ++   K +   + +H  +G   E+       E   I +         +  
Sbjct: 62  PIDAYLDIEGIIEIAKSNHV-DAIHPGYGFLSENIQFAKRCEEEGIIFIGPKSKHLDMFG 120

Query: 92  DKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147
           DK++++       +PV P     +               P +IK   GG   G+ +++  
Sbjct: 121 DKVKARTQAQLAQIPVIPGSDGPVNSLEEVEKFAEKYDYPIIIKASLGGGGRGMRIVRTS 180

Query: 148 QSIPL----DLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSY 202
           + +         ++ +    D++ +E++V+    +   ++ D   +V  +          
Sbjct: 181 EELGESYNRAKSEAKAAFGNDEVYVEKFVEKPKHIEVQILADEEGNVVHLYE-----RDC 235

Query: 203 ELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
            ++        + P   +  D+ + +   A    + +        +FL      + +++E
Sbjct: 236 SVQRRHQKVVEIAPSVSLSDDLRQRICDAAVKLTKNVNYLNAGTVEFLV--KDDEFYFIE 293

Query: 262 INV 264
           +N 
Sbjct: 294 VNP 296


>gi|161618008|ref|YP_001591895.1| methylcrotonyl-CoA carboxylase [Brucella canis ATCC 23365]
 gi|161334819|gb|ABX61124.1| Methylcrotonyl-CoA carboxylase [Brucella canis ATCC 23365]
          Length = 673

 Score = 77.9 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 39/225 (17%), Positives = 73/225 (32%), Gaps = 22/225 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      +E   + +      A      K  +K ++   GVPV P    
Sbjct: 95  AIHPGYGFLSENPAFVDAVEEAGLIFIGPSAKAIRAMGLKDAAKALMEKAGVPVVPGYHG 154

Query: 114 NRFT----MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
           +             I+ P +IK   GG   G+  +         L     ++ +      
Sbjct: 155 DNQDGAFLKSEADRITYPVLIKARAGGGGKGMCRVDSAADFAAALESARREAEASFGDGA 214

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           +L+E+Y+     +   V GD   +               L+          PA  +  ++
Sbjct: 215 VLVEKYMAKPRHIEVQVFGDNHGNAV-----HLFERDCSLQRRHQKVIEEAPAPGMTEEM 269

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR----KVFWLEINV 264
              +   A  A   IG  G    +F+ D        + F++E+N 
Sbjct: 270 RAAMGEAAVKAALTIGYSGAGTVEFIADVSEGLRPDRFFFMEMNT 314


>gi|30022035|ref|NP_833666.1| pyruvate carboxylase [Bacillus cereus ATCC 14579]
 gi|229047633|ref|ZP_04193221.1| Pyruvate carboxylase [Bacillus cereus AH676]
 gi|229081199|ref|ZP_04213709.1| Pyruvate carboxylase [Bacillus cereus Rock4-2]
 gi|229111417|ref|ZP_04240969.1| Pyruvate carboxylase [Bacillus cereus Rock1-15]
 gi|229129224|ref|ZP_04258197.1| Pyruvate carboxylase [Bacillus cereus BDRD-Cer4]
 gi|229146518|ref|ZP_04274889.1| Pyruvate carboxylase [Bacillus cereus BDRD-ST24]
 gi|29897591|gb|AAP10867.1| Pyruvate carboxylase [Bacillus cereus ATCC 14579]
 gi|228637151|gb|EEK93610.1| Pyruvate carboxylase [Bacillus cereus BDRD-ST24]
 gi|228654461|gb|EEL10326.1| Pyruvate carboxylase [Bacillus cereus BDRD-Cer4]
 gi|228672033|gb|EEL27325.1| Pyruvate carboxylase [Bacillus cereus Rock1-15]
 gi|228702243|gb|EEL54719.1| Pyruvate carboxylase [Bacillus cereus Rock4-2]
 gi|228723709|gb|EEL75066.1| Pyruvate carboxylase [Bacillus cereus AH676]
          Length = 1148

 Score = 77.9 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 31/243 (12%), Positives = 83/243 (34%), Gaps = 21/243 (8%)

Query: 35  QIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSM 91
            ID    +  ++   K +   + +H  +G   E+       E   I +         +  
Sbjct: 62  PIDAYLDIEGIIEIAKSNHV-DAIHPGYGFLSENIQFAKRCEEEGIIFIGPKSKHLDMFG 120

Query: 92  DKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147
           DK++++       +PV P     +               P +IK   GG   G+ +++  
Sbjct: 121 DKVKARTQAQLAQIPVIPGSDGPVNSLEEVEKFAEKYDYPIIIKASLGGGGRGMRIVRTS 180

Query: 148 QSIPL----DLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSY 202
           + +         ++ +    D++ +E++V+    +   ++ D   +V  +          
Sbjct: 181 EELGESYNRAKSEAKAAFGNDEVYVEKFVEKPKHIEVQILADEEGNVVHLYE-----RDC 235

Query: 203 ELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
            ++        + P   +  D+ + +   A    + +        +FL      + +++E
Sbjct: 236 SVQRRHQKVVEIAPSVSLSDDLRQRICDAAVKLTKNVNYLNAGTVEFLV--KDDEFYFIE 293

Query: 262 INV 264
           +N 
Sbjct: 294 VNP 296


>gi|161484702|ref|NP_607047.2| carbamoyl phosphate synthase large subunit [Streptococcus pyogenes
           MGAS8232]
 gi|22095490|sp|P58941|CARB_STRP8 RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
          Length = 1058

 Score = 77.9 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/292 (12%), Positives = 100/292 (34%), Gaps = 32/292 (10%)

Query: 24  SALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH-----G---NFGEDG 66
            A++ AG++   +         D   S  L    L  +   NV+      G    FG   
Sbjct: 579 KAIQKAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIDLEQPKGVIVQFGGQT 638

Query: 67  LV---QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQ 121
            +   Q++ +   +    + +     + D+   ++ +   G+P             +++ 
Sbjct: 639 AINLAQSLSD-AGVTILGTQVEDLDRAEDRDLFEKALKELGIPQPQGQTATNEEEALEAA 697

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
             I  P +++P        + +++  + +   +  +   +    +L++ Y+ G E     
Sbjct: 698 KKIGFPVLVRPSYVLGGRAMEIVENKEDLREYIRTAVKASPEHPILVDSYIFGKECEVDA 757

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241
           + D    +    +   +       +S  +     P ++   I + +          + C 
Sbjct: 758 ISDGKSVLIPGIMEHIERAGV---HSGDSMAVYPPQQLSKQIQETIAEYTKRLAIGLNCI 814

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           G+    F+    + +V+ +E+N +   T     P ++   G    ++   ++
Sbjct: 815 GMMNVQFVI--KNEQVYVIEVNPRASRT----VPFLSKVTGIPMAQIATKLI 860



 Score = 69.4 bits (169), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 50/296 (16%), Positives = 107/296 (36%), Gaps = 34/296 (11%)

Query: 25  ALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNVLHGNFG 63
           AL++ G+KV  ++        D+ +                ++   +PD     L G  G
Sbjct: 36  ALKEEGYKVILVNSNPATIMTDKEIADKIYIEPLTLEFVNRIIRKERPDAILPTLGGQTG 95

Query: 64  EDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFT 117
            +  +      IL+ LEI    + + A   + D+   KQ++     P+  S +V      
Sbjct: 96  LNMAMALSKAGILDDLEIELLGTKLSAIDQAEDRDLFKQLMQELDQPIPESTIVKTVDEA 155

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IE 176
           +     I  P +++P       G  +   ++ +          +   Q LIE+ + G  E
Sbjct: 156 VTFARDIGYPVIVRPAFTLGGTGGGICSSEEELCEITENGLKLSPVTQCLIERSIAGFKE 215

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +   VM D++ +   + V   + +     ++  +        +     + ++  +    +
Sbjct: 216 IEYEVMRDSADNA--LVVCNMENFDPVGIHTGDSIVFAPTQTLSDIENQMLRDASLKIIR 273

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           A+   G        DP S K + +E+N  P ++  S     +   GY   +L   +
Sbjct: 274 ALKIEGGCNVQLALDPYSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAKI 325


>gi|19748065|gb|AAL97546.1| putative carbamoylphosphate synthetase [Streptococcus pyogenes
           MGAS8232]
          Length = 1072

 Score = 77.9 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/292 (12%), Positives = 100/292 (34%), Gaps = 32/292 (10%)

Query: 24  SALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH-----G---NFGEDG 66
            A++ AG++   +         D   S  L    L  +   NV+      G    FG   
Sbjct: 593 KAIQKAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIDLEQPKGVIVQFGGQT 652

Query: 67  LV---QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQ 121
            +   Q++ +   +    + +     + D+   ++ +   G+P             +++ 
Sbjct: 653 AINLAQSLSD-AGVTILGTQVEDLDRAEDRDLFEKALKELGIPQPQGQTATNEEEALEAA 711

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
             I  P +++P        + +++  + +   +  +   +    +L++ Y+ G E     
Sbjct: 712 KKIGFPVLVRPSYVLGGRAMEIVENKEDLREYIRTAVKASPEHPILVDSYIFGKECEVDA 771

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241
           + D    +    +   +       +S  +     P ++   I + +          + C 
Sbjct: 772 ISDGKSVLIPGIMEHIERAGV---HSGDSMAVYPPQQLSKQIQETIAEYTKRLAIGLNCI 828

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           G+    F+    + +V+ +E+N +   T     P ++   G    ++   ++
Sbjct: 829 GMMNVQFVI--KNEQVYVIEVNPRASRT----VPFLSKVTGIPMAQIATKLI 874



 Score = 69.4 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 50/296 (16%), Positives = 107/296 (36%), Gaps = 34/296 (11%)

Query: 25  ALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNVLHGNFG 63
           AL++ G+KV  ++        D+ +                ++   +PD     L G  G
Sbjct: 50  ALKEEGYKVILVNSNPATIMTDKEIADKIYIEPLTLEFVNRIIRKERPDAILPTLGGQTG 109

Query: 64  EDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFT 117
            +  +      IL+ LEI    + + A   + D+   KQ++     P+  S +V      
Sbjct: 110 LNMAMALSKAGILDDLEIELLGTKLSAIDQAEDRDLFKQLMQELDQPIPESTIVKTVDEA 169

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IE 176
           +     I  P +++P       G  +   ++ +          +   Q LIE+ + G  E
Sbjct: 170 VTFARDIGYPVIVRPAFTLGGTGGGICSSEEELCEITENGLKLSPVTQCLIERSIAGFKE 229

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +   VM D++ +   + V   + +     ++  +        +     + ++  +    +
Sbjct: 230 IEYEVMRDSADNA--LVVCNMENFDPVGIHTGDSIVFAPTQTLSDIENQMLRDASLKIIR 287

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           A+   G        DP S K + +E+N  P ++  S     +   GY   +L   +
Sbjct: 288 ALKIEGGCNVQLALDPYSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAKI 339


>gi|161761316|ref|YP_059980.2| carbamoyl phosphate synthase large subunit [Streptococcus pyogenes
           MGAS10394]
 gi|60389500|sp|Q5XCR6|CARB_STRP6 RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
          Length = 1058

 Score = 77.9 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/292 (12%), Positives = 100/292 (34%), Gaps = 32/292 (10%)

Query: 24  SALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH-----G---NFGEDG 66
            A++ AG++   +         D   S  L    L  +   NV+      G    FG   
Sbjct: 579 KAIQKAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIDLEQPKGVIVQFGGQT 638

Query: 67  LV---QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQ 121
            +   Q++ +   +    + +     + D+   ++ +   G+P             +++ 
Sbjct: 639 AINLAQSLSD-AGVTILGTQVEDLDRAEDRDLFEKALKELGIPQPQGQTATNEEEALEAA 697

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
             I  P +++P        + +++  + +   +  +   +    +L++ Y+ G E     
Sbjct: 698 KKIGFPVLVRPSYVLGGRAMEIVENKEDLREYIRTAVKASPEHPILVDSYIFGKECEVDA 757

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241
           + D    +    +   +       +S  +     P ++   I + +          + C 
Sbjct: 758 ISDGKSVLIPGIMEHIERAGV---HSGDSMAVYPPQQLSKQIQETIAEYTKRLAIGLNCI 814

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           G+    F+    + +V+ +E+N +   T     P ++   G    ++   ++
Sbjct: 815 GMMNVQFVI--KNEQVYVIEVNPRASRT----VPFLSKVTGIPMAQIATKLI 860



 Score = 69.4 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 50/296 (16%), Positives = 107/296 (36%), Gaps = 34/296 (11%)

Query: 25  ALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNVLHGNFG 63
           AL++ G+KV  ++        D+ +                ++   +PD     L G  G
Sbjct: 36  ALKEEGYKVILVNSNPATIMTDKEIADKVYIEPLTLEFVNRIIRKERPDAILPTLGGQTG 95

Query: 64  EDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFT 117
            +  +      IL+ LEI    + + A   + D+   KQ++     P+  S +V      
Sbjct: 96  LNMAMALSKAGILDDLEIELLGTKLSAIDQAEDRDLFKQLMQELDQPIPESTIVKTVDEA 155

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IE 176
           +     I  P +++P       G  +   ++ +          +   Q LIE+ + G  E
Sbjct: 156 VTFARDIGYPVIVRPAFTLGGTGGGICSSEEELCEITENGLKLSPVTQCLIERSIAGFKE 215

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +   VM D++ +   + V   + +     ++  +        +     + ++  +    +
Sbjct: 216 IEYEVMRDSADNA--LVVCNMENFDPVGIHTGDSIVFAPTQTLSDIENQMLRDASLKIIR 273

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           A+   G        DP S K + +E+N  P ++  S     +   GY   +L   +
Sbjct: 274 ALKIEGGCNVQLALDPYSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAKI 325


>gi|317057780|ref|YP_004106247.1| acetyl-CoA carboxylase, biotin carboxylase [Ruminococcus albus 7]
 gi|315450049|gb|ADU23613.1| acetyl-CoA carboxylase, biotin carboxylase [Ruminococcus albus 7]
          Length = 456

 Score = 77.9 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 84/221 (38%), Gaps = 17/221 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC---PS 110
            +H  FG   E+     + E   I +      +  +  DK ++K+ +   GVPV      
Sbjct: 77  AIHPGFGFLSENPAFARMCEKCGIVFIGPRATSIEMLGDKAQAKETMKENGVPVIMGSDG 136

Query: 111 ILVNRFTMDS-QHLISPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSWNHGDQ 165
            + N     +    +  P ++K   GG   GI +++ +  +         ++ +    D+
Sbjct: 137 AISNIHAAKTLSRDLGYPVLVKASAGGGGRGIRIVRSEDELESQMKAAKQEALACFGNDE 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           + IE++++    +   ++ D   DV  +            K          PA  +  ++
Sbjct: 197 VYIEKFIENPKHIEIQILADDYGDVIYLGERDCSMQRRNQKVLEEAP---SPAPFMTQEL 253

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + + + A  A +  G R     +FL D  +   +++E+N 
Sbjct: 254 RERMGKAAVTAARVCGYRNAGTIEFLVDK-NGDFYFMEMNT 293


>gi|241948777|ref|XP_002417111.1| urea amidolyase (including urea carboxylase and allophanate
           hydrolase), putative [Candida dubliniensis CD36]
 gi|223640449|emb|CAX44701.1| urea amidolyase (including urea carboxylase and allophanate
           hydrolase), putative [Candida dubliniensis CD36]
          Length = 1813

 Score = 77.9 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 40/285 (14%), Positives = 94/285 (32%), Gaps = 48/285 (16%)

Query: 19  GKACASALEDAGFKVSQI--DVDRSVGLVLAHLKPDLAFNVLHGN--------------- 61
                  L+  G K   I  D D+     L     D+A   LHG                
Sbjct: 627 AVRIIKTLKKLGVKSIAIYSDPDKYAQHSLLA---DVAIP-LHGTTAAETYINIEKVIKA 682

Query: 62  ---FGEDGLVQAI------------LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP 106
               G + ++                    I +      A      K  ++++    GVP
Sbjct: 683 AKDSGAEAIIPGYGFLSENADFSDRCGKEGIVFVGPSGDAIRKLGLKHSAREIAEKAGVP 742

Query: 107 VCPSILVNRFTMDSQHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSS 159
           + P   + +   +++ +   +  P ++K   GG  +G+  +  ++ I         Q  S
Sbjct: 743 LVPGSGLVKDAKEAREIAAKLEYPIMVKSTAGGGGIGLQKVDSEKDIERVFETVQHQGKS 802

Query: 160 WNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
           +     + +E++V+    +   ++GD + +   +            K             
Sbjct: 803 YFGDSGVFLERFVENARHVEIQMLGDGNGNAIAVGERDCSLQRRNQKII----EETPAPN 858

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
           +P +   ++++ A      +  +     ++++DP   + ++LE+N
Sbjct: 859 LPEETRSKMRKAAESLGSTMKYKCAGTVEYIYDPKRDEFYFLEVN 903


>gi|149369312|ref|ZP_01889164.1| biotin carboxylase, subunit of acetyl CoA carboxylase [unidentified
           eubacterium SCB49]
 gi|149356739|gb|EDM45294.1| biotin carboxylase, subunit of acetyl CoA carboxylase [unidentified
           eubacterium SCB49]
          Length = 451

 Score = 77.9 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 77/221 (34%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     I E   I +  +         DK  +K  + + GVP  P    
Sbjct: 77  AIHPGYGFLSENAKFSKICEEHNIKFIGASPDMIDKMGDKANAKSTMIAAGVPCVPGSEG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS-----SSWNHGD 164
            I      +        P ++K   GG   G+  + K++ +      +     +++ + D
Sbjct: 137 VIETFEDCLKIAKETGYPVMLKASAGGGGKGMRAVWKEEDLQDAWESARQESKAAFGNDD 196

Query: 165 QLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
             + E+ ++    +   ++GD+      ++           K     +       +  ++
Sbjct: 197 MYM-EKLIEEPRHIEIQIIGDSKGKACHLSERDCSIQRRHQK----LTEETPSPFMTDEL 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              +   A  A + I   G    +FL D   R  +++E+N 
Sbjct: 252 RAAMGEAAVKAAEYIKYEGAGTVEFLVDKH-RNFYFMEMNT 291


>gi|50903082|gb|AAT86797.1| Carbamoyl-phosphate synthase large chain [Streptococcus pyogenes
           MGAS10394]
          Length = 1073

 Score = 77.9 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/292 (12%), Positives = 100/292 (34%), Gaps = 32/292 (10%)

Query: 24  SALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH-----G---NFGEDG 66
            A++ AG++   +         D   S  L    L  +   NV+      G    FG   
Sbjct: 594 KAIQKAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIDLEQPKGVIVQFGGQT 653

Query: 67  LV---QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQ 121
            +   Q++ +   +    + +     + D+   ++ +   G+P             +++ 
Sbjct: 654 AINLAQSLSD-AGVTILGTQVEDLDRAEDRDLFEKALKELGIPQPQGQTATNEEEALEAA 712

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
             I  P +++P        + +++  + +   +  +   +    +L++ Y+ G E     
Sbjct: 713 KKIGFPVLVRPSYVLGGRAMEIVENKEDLREYIRTAVKASPEHPILVDSYIFGKECEVDA 772

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241
           + D    +    +   +       +S  +     P ++   I + +          + C 
Sbjct: 773 ISDGKSVLIPGIMEHIERAGV---HSGDSMAVYPPQQLSKQIQETIAEYTKRLAIGLNCI 829

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           G+    F+    + +V+ +E+N +   T     P ++   G    ++   ++
Sbjct: 830 GMMNVQFVI--KNEQVYVIEVNPRASRT----VPFLSKVTGIPMAQIATKLI 875



 Score = 69.4 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 50/296 (16%), Positives = 107/296 (36%), Gaps = 34/296 (11%)

Query: 25  ALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNVLHGNFG 63
           AL++ G+KV  ++        D+ +                ++   +PD     L G  G
Sbjct: 51  ALKEEGYKVILVNSNPATIMTDKEIADKVYIEPLTLEFVNRIIRKERPDAILPTLGGQTG 110

Query: 64  EDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFT 117
            +  +      IL+ LEI    + + A   + D+   KQ++     P+  S +V      
Sbjct: 111 LNMAMALSKAGILDDLEIELLGTKLSAIDQAEDRDLFKQLMQELDQPIPESTIVKTVDEA 170

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IE 176
           +     I  P +++P       G  +   ++ +          +   Q LIE+ + G  E
Sbjct: 171 VTFARDIGYPVIVRPAFTLGGTGGGICSSEEELCEITENGLKLSPVTQCLIERSIAGFKE 230

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +   VM D++ +   + V   + +     ++  +        +     + ++  +    +
Sbjct: 231 IEYEVMRDSADNA--LVVCNMENFDPVGIHTGDSIVFAPTQTLSDIENQMLRDASLKIIR 288

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           A+   G        DP S K + +E+N  P ++  S     +   GY   +L   +
Sbjct: 289 ALKIEGGCNVQLALDPYSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAKI 340


>gi|296504442|ref|YP_003666142.1| pyruvate carboxylase [Bacillus thuringiensis BMB171]
 gi|296325494|gb|ADH08422.1| pyruvate carboxylase [Bacillus thuringiensis BMB171]
          Length = 1148

 Score = 77.9 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 31/243 (12%), Positives = 83/243 (34%), Gaps = 21/243 (8%)

Query: 35  QIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSM 91
            ID    +  ++   K +   + +H  +G   E+       E   I +         +  
Sbjct: 62  PIDAYLDIEGIIEIAKSNHV-DAIHPGYGFLSENIQFAKRCEEEGIIFIGPKSKHLDMFG 120

Query: 92  DKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147
           DK++++       +PV P     +               P +IK   GG   G+ +++  
Sbjct: 121 DKVKARTQAQLAQIPVIPGSDGPVNSLEEVEKFAEKYDYPIIIKASLGGGGRGMRIVRTS 180

Query: 148 QSIPL----DLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSY 202
           + +         ++ +    D++ +E++V+    +   ++ D   +V  +          
Sbjct: 181 EELGESYNRAKSEAKAAFGNDEVYVEKFVEKPKHIEVQILADEEGNVVHLYE-----RDC 235

Query: 203 ELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
            ++        + P   +  D+ + +   A    + +        +FL      + +++E
Sbjct: 236 SVQRRHQKVVEIAPSVSLSDDLRQRICDAAVKLTKNVNYLNAGTVEFLV--KDDEFYFIE 293

Query: 262 INV 264
           +N 
Sbjct: 294 VNP 296


>gi|218236059|ref|YP_002368748.1| pyruvate carboxylase [Bacillus cereus B4264]
 gi|229152146|ref|ZP_04280340.1| Pyruvate carboxylase [Bacillus cereus m1550]
 gi|218164016|gb|ACK64008.1| pyruvate carboxylase [Bacillus cereus B4264]
 gi|228631338|gb|EEK87973.1| Pyruvate carboxylase [Bacillus cereus m1550]
          Length = 1148

 Score = 77.9 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 31/243 (12%), Positives = 83/243 (34%), Gaps = 21/243 (8%)

Query: 35  QIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSM 91
            ID    +  ++   K +   + +H  +G   E+       E   I +         +  
Sbjct: 62  PIDAYLDIEGIIEIAKSNHV-DAIHPGYGFLSENIQFAKRCEEEGIIFIGPKSKHLDMFG 120

Query: 92  DKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147
           DK++++       +PV P     +               P +IK   GG   G+ +++  
Sbjct: 121 DKVKARTQAQLAQIPVIPGSDGPVNSLEEVEKFAEKYDYPIIIKASLGGGGRGMRIVRTS 180

Query: 148 QSIPL----DLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSY 202
           + +         ++ +    D++ +E++V+    +   ++ D   +V  +          
Sbjct: 181 EELGESYNRAKSEAKAAFGNDEVYVEKFVEKPKHIEVQILADEEGNVVHLYE-----RDC 235

Query: 203 ELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
            ++        + P   +  D+ + +   A    + +        +FL      + +++E
Sbjct: 236 SVQRRHQKVVEIAPSVSLSDDLRQRICDAAVKLTKNVNYLNAGTVEFLV--KDDEFYFIE 293

Query: 262 INV 264
           +N 
Sbjct: 294 VNP 296


>gi|153011900|ref|YP_001373113.1| pyruvate carboxylase [Ochrobactrum anthropi ATCC 49188]
 gi|151563788|gb|ABS17284.1| pyruvate carboxylase [Ochrobactrum anthropi ATCC 49188]
          Length = 1157

 Score = 77.9 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 78/221 (35%), Gaps = 18/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-L 112
            +H  +G   E            I +            +K+ ++ +  S GVPV P+   
Sbjct: 85  AIHPGYGLLSESPEFVEACNKAGITFIGPTADTMRQLGNKVAARNLAISVGVPVVPATDP 144

Query: 113 VNRFTMDSQ---HLISPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSWNHGDQ 165
           +     + +     I  P ++K   GG   G+  I+K + +         ++ +    D+
Sbjct: 145 LPDDMAEVERMAEEIGYPVMLKASWGGGGRGMRAIRKKEDLAREVTEAKREAKAAFGKDE 204

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           + +E+ V+    +   ++GD   +V  +            K          PA  +    
Sbjct: 205 VYLEKLVERARHVESQILGDTHGNVVHLFERDCSIQRRNQK-----VVERAPAPYLSEAQ 259

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +E+   +     A    G    ++L D  + K +++E+N 
Sbjct: 260 RQELASYSLKIAGATNYIGAGTVEYLMDADTGKFYFIEVNP 300


>gi|167038198|ref|YP_001665776.1| phosphoribosylaminoimidazole carboxylase ATPase subunit
           [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|167039093|ref|YP_001662078.1| phosphoribosylaminoimidazole carboxylase ATPase subunit
           [Thermoanaerobacter sp. X514]
 gi|256750947|ref|ZP_05491831.1| phosphoribosylaminoimidazole carboxylase, ATPase subunit
           [Thermoanaerobacter ethanolicus CCSD1]
 gi|300913318|ref|ZP_07130635.1| phosphoribosylaminoimidazole carboxylase, ATPase subunit
           [Thermoanaerobacter sp. X561]
 gi|307723668|ref|YP_003903419.1| phosphoribosylaminoimidazole carboxylase, ATPase subunit
           [Thermoanaerobacter sp. X513]
 gi|320116608|ref|YP_004186767.1| phosphoribosylaminoimidazole carboxylase, ATPase subunit
           [Thermoanaerobacter brockii subsp. finnii Ako-1]
 gi|166853333|gb|ABY91742.1| phosphoribosylaminoimidazole carboxylase, ATPase subunit
           [Thermoanaerobacter sp. X514]
 gi|166857032|gb|ABY95440.1| phosphoribosylaminoimidazole carboxylase, ATPase subunit
           [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|256750282|gb|EEU63302.1| phosphoribosylaminoimidazole carboxylase, ATPase subunit
           [Thermoanaerobacter ethanolicus CCSD1]
 gi|300890003|gb|EFK85148.1| phosphoribosylaminoimidazole carboxylase, ATPase subunit
           [Thermoanaerobacter sp. X561]
 gi|307580729|gb|ADN54128.1| phosphoribosylaminoimidazole carboxylase, ATPase subunit
           [Thermoanaerobacter sp. X513]
 gi|319929699|gb|ADV80384.1| phosphoribosylaminoimidazole carboxylase, ATPase subunit
           [Thermoanaerobacter brockii subsp. finnii Ako-1]
          Length = 386

 Score = 77.9 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 48/197 (24%), Positives = 84/197 (42%), Gaps = 16/197 (8%)

Query: 73  ELLEIPY-THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIK 131
           EL +  Y  +    +  +  DK++ KQV+    +PV     V  F +        P++ K
Sbjct: 89  ELFDKGYKIYPSPYSLEIIQDKLKQKQVLKGANLPVPRFEKVENFEVSFFEKFGFPFIQK 148

Query: 132 PLKGG-SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDV 189
             KGG    G++VIK    +   L   S        LIE++VD G EL   V  +   ++
Sbjct: 149 ATKGGYDGRGVVVIKDKNDLDKMLRVDS--------LIEEFVDMGKELAVMVARNLQGEI 200

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
               V +  F     + +++    + PA+I  +I + V+ +A  A +A+   GI   +  
Sbjct: 201 KCYPVVEMVF----DESANILDLLIAPARIEKEIEENVKEIAIKAVEALDGIGIFGIEMF 256

Query: 250 FDPLSRKVFWLEINVQP 266
                +K+   EI  +P
Sbjct: 257 LTK-DKKILINEIAPRP 272


>gi|240168973|ref|ZP_04747632.1| pyruvate carboxylase [Mycobacterium kansasii ATCC 12478]
          Length = 1127

 Score = 77.9 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 39/247 (15%), Positives = 83/247 (33%), Gaps = 18/247 (7%)

Query: 28  DAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87
           + G  V        +         D  +   +G   E+  +        I +   G    
Sbjct: 53  EMGHPVRAYLSVDQIVETARRAGADAIYPG-YGFLSENPELSRACAAAGITFVGPGAEVL 111

Query: 88  ALSMDKMRSKQVVSSCGVPV----CPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIV 143
            L+ +K R+       G+PV     PS  V+   M +   +  P  +K + GG   G+  
Sbjct: 112 ELTGNKSRAVAAARQAGLPVLTSSAPSASVDEL-MSAAAGMRFPLFVKAVAGGGGRGMRR 170

Query: 144 IKKDQSIPLDLLQS-----SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD 198
           +    ++P  +  +     S++      L +  +    +   ++ D S +V  +      
Sbjct: 171 VGDIAALPEAIEAASREAESAFGDPTVYLEQAVLRPRHIEVQILADTSGNVIHLYE---- 226

Query: 199 FYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
                ++        + PA  +P ++   +   A    + IG       +FL D    + 
Sbjct: 227 -RDCSVQRRHQKVIELAPAPNLPAELRDRMCADAVAFARHIGYSCAGTVEFLLDQR-GEY 284

Query: 258 FWLEINV 264
            ++E+N 
Sbjct: 285 VFIEMNP 291


>gi|220921870|ref|YP_002497171.1| carbamoyl-phosphate synthase L chain ATP-binding [Methylobacterium
           nodulans ORS 2060]
 gi|219946476|gb|ACL56868.1| Carbamoyl-phosphate synthase L chain ATP-binding [Methylobacterium
           nodulans ORS 2060]
          Length = 673

 Score = 77.9 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 72/220 (32%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H  +G   E       L    I +      A A   DK+ SK+  S+  V   P  L 
Sbjct: 77  AVHPGYGFLSEREAFPKALAEAGIVFIGPNPGAIAAMGDKIESKKAASAARVSTVPGFLG 136

Query: 113 ---VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
                   +     I  P +IK   GG   G+ +      +     ++ S        D+
Sbjct: 137 VIESPEHAVQIADEIGYPVMIKASAGGGGKGMRIAHSAAEVAEGFARARSEAASSFGDDR 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+++ D   +   V+GD   +V  +   +        K             +  +  
Sbjct: 197 VFIEKFITDPRHIEIQVIGDKHGNVIYLGERECSIQRRNQK----VIEEAPSPLLDEETR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +   A    +A+        +F      +  ++LE+N 
Sbjct: 253 RRMGEQAVALARAVHYDSAGTVEF-VAGQDKSFYFLEMNT 291


>gi|110833847|ref|YP_692706.1| acetyl-CoA carboxylase [Alcanivorax borkumensis SK2]
 gi|110646958|emb|CAL16434.1| acetyl-CoA carboxylase [Alcanivorax borkumensis SK2]
          Length = 651

 Score = 77.9 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 41/221 (18%), Positives = 71/221 (32%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       +   I +      A  L   K  SK  +   GVP  P    
Sbjct: 78  AVHPGYGFLSENAAFSKACKDAGITFIGPDEGAIQLMGSKRLSKIAMQEAGVPCIPGYQG 137

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS-----SSWNHGD 164
              + +        I  P +IK   GG   G+ V+     I   L  +     S++   +
Sbjct: 138 EEQSDERLQQEAERIGLPLMIKASAGGGGRGMRVVTDASDISAQLKSARQEAKSAFGSDE 197

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
            +L    +    +   V GD   +V              ++          P+  +   +
Sbjct: 198 LILERAVLQPRHVEIQVFGDRHGNVI-----HLGERDCSVQRRHQKVVEEAPSPAVDESL 252

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +   A  A +A    G    +FL  P     F+LE+N 
Sbjct: 253 RQRMGEAAVQAAKACQYVGAGTVEFLLAPQ-GDFFFLEMNT 292


>gi|325073616|gb|ADY76670.1| Daba synthase [Streptomyces sp. DSM 5940]
          Length = 755

 Score = 77.9 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 46/233 (19%), Positives = 90/233 (38%), Gaps = 23/233 (9%)

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYVIKP 132
           L +P   +   A A    K  ++++++  G+P   S+ V R     D+      P V+KP
Sbjct: 440 LGLP--GNPPAAVAACRRKSATRRLLTDAGLPQPVSVPVTRVADMPDAVAATGLPCVVKP 497

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG-------DQLLIEQYVDGIELTCGVMGDA 185
               +S G+++    +       +  +  H         ++L+E++V G E +   +   
Sbjct: 498 ASDSASTGVLLCTSVEQARDHAAKLLAITHNVRDQAVPPEVLVEEHVQGPEYSVETI--- 554

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR-GIS 244
                E+ V      S     S +   H  PA +     + ++R+   A +A+G R G  
Sbjct: 555 -FVAGELHVVGITRKSVSPPPSFVELRHTFPAPLDTAGSRAIERMVRAAIEAVGLRHGAC 613

Query: 245 RSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
            ++            +EIN +       + PE+   AG    +LL   +  A+
Sbjct: 614 HTEVRLTAKG--PTIIEINAR---LAGGMIPELIRLAGG--PDLLTQQLRAAA 659


>gi|308176973|ref|YP_003916379.1| pyruvate carboxylase [Arthrobacter arilaitensis Re117]
 gi|307744436|emb|CBT75408.1| pyruvate carboxylase [Arthrobacter arilaitensis Re117]
          Length = 1150

 Score = 77.9 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 41/250 (16%), Positives = 88/250 (35%), Gaps = 20/250 (8%)

Query: 28  DAGFKVS-QIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           + G  V   +D+D  +  V      D  +   +G   E+  +        I +       
Sbjct: 53  EEGHPVRAYLDIDE-IVRVAKEAGADAIYPG-YGFLSENPDLARAAAAEGIKFIGPKADV 110

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNR---FTMDSQHLISPPYVIKPLKGGSSLGIIV 143
             L+ +K+ + +     G+PV  S   +    F +     I  P  +K + GG   G+  
Sbjct: 111 LELAGNKVAALKAAREAGIPVLESSEPSDDVDFLIAEADRIGFPIFVKAVAGGGGRGMRR 170

Query: 144 IKKDQSIP----LDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSD 198
           + K + +P      + ++ +      + +EQ V     +   ++ D   ++         
Sbjct: 171 VDKREDLPELMGAAMREAGTAFGDPTVFLEQAVLRPRHIEVQILADEQGNIV-----HLH 225

Query: 199 FYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS--- 254
                L+        + PA  +   I + + R A    Q +G +     +FL D +    
Sbjct: 226 ERDCSLQRRHQKVVEIAPAPNLDESIRQALFRDAVKFAQTLGYQNAGTVEFLVDTVGERA 285

Query: 255 RKVFWLEINV 264
            +  ++E+N 
Sbjct: 286 GQHVFIEMNP 295


>gi|282853025|ref|ZP_06262362.1| conserved domain protein [Propionibacterium acnes J139]
 gi|282582478|gb|EFB87858.1| conserved domain protein [Propionibacterium acnes J139]
          Length = 96

 Score = 77.9 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 39/90 (43%), Gaps = 1/90 (1%)

Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           Y+   +    PA I     +    +A +  + +   GISR D + D   R VF LE    
Sbjct: 2   YTGGETRLTAPADISGTAAQTATAMARVVQKELDFSGISRVDAIVDESGRPVF-LEAGAA 60

Query: 266 PGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           PGMT  S+ P     AG    E+   +V+D
Sbjct: 61  PGMTATSLVPVAMKAAGLDLGEVCSRLVDD 90


>gi|289207884|ref|YP_003459950.1| carbamoyl-phosphate synthase, large subunit [Thioalkalivibrio sp.
           K90mix]
 gi|288943515|gb|ADC71214.1| carbamoyl-phosphate synthase, large subunit [Thioalkalivibrio sp.
           K90mix]
          Length = 1077

 Score = 77.9 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 46/278 (16%), Positives = 102/278 (36%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D +             +V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPVEWETVAKIIEKERPDAVLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +    + +LE   +    +   A  ++ D+   K  ++  G+    ++L
Sbjct: 89  TMGGQTALNCALDLSREGVLEKYGVEMIGANEAAIDMAEDRDHFKAAMADIGLDTPTAML 148

Query: 113 VNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            + +    + Q  I  P +I+P       G  +    +     +      +  +Q+L+E+
Sbjct: 149 AHSWEEAQEIQPKIGFPVIIRPSFTLGGSGGGIAYNREEFEYIVKNGLDLSPVNQVLLEE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
              G  E    V+ D + +   I   ++ D           +S  V PA+ +    Y+ +
Sbjct: 209 SALGWKEFEMEVVRDKADNCIIICSIENLDPMGIHT----GDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RDASLAVLRKIGVETGGSNVQFAINPENGRMIVIEMNP 302



 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 27/196 (13%), Positives = 75/196 (38%), Gaps = 8/196 (4%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--QHLISPPYV 129
           LE   +P   +   +  L+ D+ R + ++   G+   P+               I  P V
Sbjct: 653 LEAAGVPIIGTSPDSIDLAEDRERFQALLHKLGLKQPPNRTARSEEEAEKLADEIGYPLV 712

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + +++  + +   +  + S ++   +L+++++ D IE+    + D    
Sbjct: 713 VRPSYVLGGRAMEIVRDREDLRSYMQNAVSVSNDAPVLLDRFLDDAIEVDVDAICDGENV 772

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           +    +   +       +S  ++  + P  + L++   +         A+G + +   + 
Sbjct: 773 IIGGIMEHIEQAGV---HSGDSACSLPPFSLSLELQDAMVEQVRKM--ALGLKVVGLMNT 827

Query: 249 LFDPLSRKVFWLEINV 264
            F      ++ LE+N 
Sbjct: 828 QFAIKGDDIYVLEVNP 843


>gi|239942314|ref|ZP_04694251.1| pyridoxal-phosphate dependent enzyme [Streptomyces roseosporus NRRL
           15998]
 gi|239988779|ref|ZP_04709443.1| pyridoxal-phosphate dependent enzyme [Streptomyces roseosporus NRRL
           11379]
 gi|291445772|ref|ZP_06585162.1| DabC [Streptomyces roseosporus NRRL 15998]
 gi|291348719|gb|EFE75623.1| DabC [Streptomyces roseosporus NRRL 15998]
          Length = 755

 Score = 77.9 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 46/233 (19%), Positives = 90/233 (38%), Gaps = 23/233 (9%)

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYVIKP 132
           L +P   +   A A    K  ++++++  G+P   S+ V R     D+      P V+KP
Sbjct: 440 LGLP--GNPPAAVAACRRKSATRRLLTDAGLPQPVSVPVTRVADMPDAVAATGLPCVVKP 497

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG-------DQLLIEQYVDGIELTCGVMGDA 185
               +S G+++    +       +  +  H         ++L+E++V G E +   +   
Sbjct: 498 ASDSASTGVLLCTSVEQARDHAAKLLAITHNVRDQAVPPEVLVEEHVQGPEYSVETI--- 554

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR-GIS 244
                E+ V      S     S +   H  PA +     + ++R+   A +A+G R G  
Sbjct: 555 -FVAGELHVVGITRKSVSPPPSFVELRHTFPAPLDKAGSRAIERMVRAAIEAVGLRHGAC 613

Query: 245 RSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
            ++            +EIN +       + PE+   AG    +LL   +  A+
Sbjct: 614 HTEVRLTAKG--PTIIEINAR---LAGGMIPELIRLAGG--PDLLTQQLRAAA 659


>gi|168185796|ref|ZP_02620431.1| pyruvate carboxylase [Clostridium botulinum C str. Eklund]
 gi|169295974|gb|EDS78107.1| pyruvate carboxylase [Clostridium botulinum C str. Eklund]
          Length = 1145

 Score = 77.9 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 39/222 (17%), Positives = 78/222 (35%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+       E   I +            DK++SK V  S  VP  P    
Sbjct: 81  AIHPGYGFLSENAEFVRKCEEAGIEFIGPTAEMMEKLGDKIKSKLVAQSVNVPTIPGVEK 140

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS-----SSWNHGD 164
            +      +        P ++K   GG   G+ +++    +      +      ++   D
Sbjct: 141 PVTSEEEAIKFADYCGYPIMLKAAAGGGGRGMRIVRNKDELIPSFKSAKNEAKKAFGIDD 200

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + IE+Y++    +   V+GD   ++  +            K          PA  +P +
Sbjct: 201 -IFIEKYLENPKHIEVQVIGDKHGNIVHLYERDCSIQRRHQK-----VIEFTPAFALPKE 254

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +E+   A    +++G R     +FL D      +++E+N 
Sbjct: 255 KREEICSDALKIARSVGYRSAGTLEFLVDMHGNH-YFIEMNP 295


>gi|56480299|ref|NP_709051.2| acetyl-CoA carboxylase biotin carboxylase subunit [Shigella
           flexneri 2a str. 301]
 gi|56383850|gb|AAN44758.2| acetyl CoA carboxylase, biotin carboxylase subunit [Shigella
           flexneri 2a str. 301]
          Length = 449

 Score = 77.9 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 80/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         L  DK+ +   +   GVP  P    
Sbjct: 77  AIHPGYGFLSENANFAEQVERSGFIFIGPKAETIRLMGDKVSAIAAMKKAGVPCVPGSDG 136

Query: 112 -LVNRFTMDS--QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
            L +    +      I  P +IK   GG   G+ V++ D  +   +     ++ +    D
Sbjct: 137 PLGDDMDKNRAIAKRIGYPVIIKASGGGGCRGMRVVRGDAELAQSISMTRAEAKAAFSND 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+Y++    +   V+ D   +   +A           K          PA  I  +
Sbjct: 197 MVYMEKYLENPRHVEIQVLADGQGNAIYLAERDCSMQRRHQK-----VVEEAPAPGITPE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + + +      A   IG RG    +FLF   + + +++E+N 
Sbjct: 252 LRRYIGERCAKACVDIGYRGAGTFEFLF--ENGEFYFIEMNT 291


>gi|169796465|ref|YP_001714258.1| putative multifonctional protein [Includes: putative
           carbamoyl-phosphate synthase L chain; putative biotin
           carboxylase; putative allophanate hydrolase subunit 2
           and 1] [Acinetobacter baumannii AYE]
 gi|169149392|emb|CAM87276.1| putative multifonctional protein [Includes: putative
           Carbamoyl-phosphate synthase L chain; putative Biotin
           carboxylase; putative Allophanate hydrolase subunit 2
           and 1] [Acinetobacter baumannii AYE]
          Length = 1110

 Score = 77.9 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 41/257 (15%), Positives = 88/257 (34%), Gaps = 32/257 (12%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     + E   I +             K  ++++     VP+ P    
Sbjct: 77  AIHPGYGFLSENAEFCDLCESQGIAFIGPTSSQMLDFGLKHTARELAIKSNVPLLPGSSL 136

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN----HGDQL 166
           +      +     I  P ++K   GG  +G+ ++  +  +       S           L
Sbjct: 137 LANEAEALAEAARIGYPVMLKSTAGGGGIGMRLVWNETELKDAFQTVSYLAQVNFKDAGL 196

Query: 167 LIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIY 224
            +E++V     +   + GD    V  +           ++  +       PA  +     
Sbjct: 197 YLEKFVQHARHIEVQIFGDGQGQVLALGE-----RDCSVQRRNQKVIEETPAPHLNEQQR 251

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
             +Q++A    Q++  R     +F+ D  +++ ++LE+N             +    G +
Sbjct: 252 DYLQKVAIQLMQSVNYRSAGTVEFVMDTETQEFYFLEVNT-----------RLQVEHGVT 300

Query: 285 ---FR-ELLLWMVEDAS 297
              F  +L+ WMV  AS
Sbjct: 301 EQVFGVDLVEWMVTLAS 317


>gi|87121005|ref|ZP_01076897.1| carbamoyl-phosphate synthase, putative [Marinomonas sp. MED121]
 gi|86163843|gb|EAQ65116.1| carbamoyl-phosphate synthase, putative [Marinomonas sp. MED121]
          Length = 452

 Score = 77.9 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 40/223 (17%), Positives = 83/223 (37%), Gaps = 21/223 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     +LE   I +      +     DK R++ +    GV V P    
Sbjct: 76  AVHPGYGFLSENTEFARLLEQNGIIWIGPSAKSILDMGDKERARSLAVYAGVNVLPGSRR 135

Query: 111 ILVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL-----DLLQSSSWNHG 163
             ++     +++  ++  P ++K   GG  +G+ +++  Q++         + + S+   
Sbjct: 136 FTLDDHNGLLEAAEVVGFPLLVKASAGGGGIGMRLVESAQNLAQTVESTQQMAARSFG-D 194

Query: 164 DQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPL 221
             + +E+YV     +   V G  +     +   +        K          PA  IP 
Sbjct: 195 GTIFMERYVAKARHIEIQVFGFGNGRAIHLYERECSIQRRFQK-----IIEEAPAPGIPT 249

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            I  ++   A    Q     G    +F+ D  + + F+LE+N 
Sbjct: 250 AIRDDMAAAAVRLTQEQNYLGAGTVEFILDADTFEYFFLEMNT 292


>gi|297184357|gb|ADI20473.1| pyruvate carboxylase [uncultured alpha proteobacterium
           EB080_L58F04]
          Length = 1150

 Score = 77.9 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 32/199 (16%), Positives = 69/199 (34%), Gaps = 15/199 (7%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIK 131
           +I +            DK  +++V    GVPV P+  V    +         +  P ++K
Sbjct: 102 DIAFIGPRAETMRALGDKASARRVAVEAGVPVIPATEVLGDDVADIARQAEDVGYPLMLK 161

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQ-----SSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186
              GG   G+  I     +   +L+      +++ +G+  L +  +    +   ++GD  
Sbjct: 162 ASWGGGGRGMRPITHPGELEEKVLEGRREAEAAFGNGEGYLEKMILRARHVEVQILGDKQ 221

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISR 245
             +  +           ++  +       PA  +      E+  L       +       
Sbjct: 222 GAIYHLWE-----RDCSVQRRNQKVVERAPAPYLNEAQRAELCELGRRICAHVNYECAGT 276

Query: 246 SDFLFDPLSRKVFWLEINV 264
            +FL D  S K +++E+N 
Sbjct: 277 VEFLMDMDSGKFYFIEVNP 295


>gi|222056576|ref|YP_002538938.1| pyruvate carboxylase [Geobacter sp. FRC-32]
 gi|221565865|gb|ACM21837.1| pyruvate carboxylase [Geobacter sp. FRC-32]
          Length = 1148

 Score = 77.9 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 51/280 (18%), Positives = 99/280 (35%), Gaps = 32/280 (11%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAG---FKVSQIDVDRSVGLVLAHLKPDLAFNV 57
           +A+     S E ++SL   KA  + L   G        + +D  + L L     D+  + 
Sbjct: 33  VAI----YSEEDKLSLHRYKADEAYLIGKGKSPIDAY-LGIDEIIALALKR---DV--DA 82

Query: 58  LHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS---- 110
           +H  +G   E+       E   I +            DK+ +++V    GVPV P     
Sbjct: 83  IHPGYGFLSENAEFAEKCEAAGITFIGPTAEMQRRLGDKVAARKVAMEAGVPVVPGTEEP 142

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQL 166
           +      +        P +IK   GG   G+ V    + +   L  + S          +
Sbjct: 143 VEHEEDALIFAKNYGYPIIIKAAAGGGGRGMRVANNRKELIEGLAAARSEAQASFGNPAV 202

Query: 167 LIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIY 224
            +E+Y++    +   V+GD+  ++              ++          P+  I  ++ 
Sbjct: 203 FLERYLENPKHIEVQVLGDSHGNLV-----HFFERDCSIQRRHQKVVEFAPSLCITPEMR 257

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +E+   A      +G R     +FL D      +++E+N 
Sbjct: 258 EELCSAALKIAGHVGYRNAGTVEFLLDQEGN-FYFIEMNP 296


>gi|197123994|ref|YP_002135945.1| carbamoyl phosphate synthase large subunit [Anaeromyxobacter sp. K]
 gi|196173843|gb|ACG74816.1| carbamoyl-phosphate synthase, large subunit [Anaeromyxobacter sp.
           K]
          Length = 1067

 Score = 77.9 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 54/325 (16%), Positives = 102/325 (31%), Gaps = 73/325 (22%)

Query: 18  SGKACASALEDAGFK----------------------VSQIDVDRSVGLVLAHLKPDLAF 55
           SG     AL   G++                      V  +DV  ++  ++   +PD   
Sbjct: 29  SGTQACKALRKLGYRIVLVNSNPATIMTDPGMADATYVEPLDV-ETLTRIIEKERPDALL 87

Query: 56  NVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
             L G  G +   +     +L+   +      + A     D+   K+ ++  G+    S 
Sbjct: 88  PNLGGQTGLNLSSELARKGVLDQYGVRVIGVNLDAIRRGEDRETFKETMTRLGIETARSE 147

Query: 112 LVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
           +       M +   +  P V++P       G       + +     +    +   Q+L+E
Sbjct: 148 IATTLEQAMAAGQRLGFPLVVRPAYTMGGTGGGFAYNVEELEEIAARGLLASPVSQVLVE 207

Query: 170 QYV--------------DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215
           + V               G ++T   + +    V  + V   D Y      +        
Sbjct: 208 ESVLGWEELELEVVRDAKGRKITVCFIEN----VDAMGVHTGDSYCTAPMLT-------- 255

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI-- 273
              I  ++   +Q  A+    AI   G +   F  DP + +V  +EIN +   T  S   
Sbjct: 256 ---ISPELQARLQDQAYRIVDAIEVIGGTNVQFAHDPRTGRVIVIEINPR---TSRSSAL 309

Query: 274 ------FPEM----AAYAGYSFREL 288
                 FP         AG +  E+
Sbjct: 310 ASKATGFPIALVSSMLAAGLTLDEI 334



 Score = 61.7 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 34/241 (14%), Positives = 81/241 (33%), Gaps = 13/241 (5%)

Query: 27  EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           +   F+   ++    V  +    +PD       G    +   Q  LE   +    +    
Sbjct: 607 DRLYFEPVTVE---DVLSIYRKERPDGVMVQFGGQTPLNIARQ--LEEAGVRILGTSPET 661

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVI 144
             L+ D+ R   VV   G+P   S L       +     +  P +++P       G+ V+
Sbjct: 662 IDLAEDRERFSAVVRKLGIPQPESGLARDQDEALALARRMGYPLIVRPSYVLGGRGMEVV 721

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYE 203
             ++ +   + ++   +    L ++++ VD +E     + D +       +   +     
Sbjct: 722 HDEEMLREYVRKAVDVSPERPLYVDRFLVDAVETEADAICDGTDAFVPAVMEHIELAGV- 780

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
             +S  ++  + P  +  +    ++         +G  G+    +        V+ LE N
Sbjct: 781 --HSGDSACVIPPVNVAPEHLATIEDYTRRLALELGVVGLINVQYAI--AGGTVYVLEAN 836

Query: 264 V 264
            
Sbjct: 837 P 837


>gi|108804409|ref|YP_644346.1| carbamoyl-phosphate synthase L chain, ATP-binding protein
           [Rubrobacter xylanophilus DSM 9941]
 gi|108765652|gb|ABG04534.1| Carbamoyl-phosphate synthase L chain, ATP-binding protein
           [Rubrobacter xylanophilus DSM 9941]
          Length = 448

 Score = 77.9 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 41/217 (18%), Positives = 80/217 (36%), Gaps = 14/217 (6%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+  + +      + +         L+ DK+RS++  ++ G+PV P   V
Sbjct: 78  AIHPGYGFLSENPALASAAREHGLRFIGPPAGVIELAGDKLRSRETAAAAGLPVVPGGEV 137

Query: 114 N--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL----DLLQSSSWNHGDQLL 167
                 +        P ++K   GG   GI +      +       L ++ +    D+L 
Sbjct: 138 RALEDALRFAEAHGYPVLLKAAAGGGGRGIKLAWDRGQLERLFGVALAEAGAAFGDDRLY 197

Query: 168 IEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE 226
           +E+++     +   V  D    V           S + +Y  +      PA +       
Sbjct: 198 VERFIRRARHVEVQVAADEHGGVVHFGERD---CSVQRRYQKIVEEAPAPA-LDPGTRAA 253

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
           +   A      IG R +   +F+ D  S + F+LE+N
Sbjct: 254 LHAAAVRFAAEIGYRNLGTVEFVVDARSGEFFFLEMN 290


>gi|260567334|ref|ZP_05837804.1| biotin-requiring enzyme [Brucella suis bv. 4 str. 40]
 gi|260156852|gb|EEW91932.1| biotin-requiring enzyme [Brucella suis bv. 4 str. 40]
          Length = 655

 Score = 77.9 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 39/225 (17%), Positives = 73/225 (32%), Gaps = 22/225 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      +E   + +      A      K  +K ++   GVPV P    
Sbjct: 77  AIHPGYGFLSENPAFVDAVEEAGLIFIGPSAKAIRAMGLKDAAKALMEKAGVPVVPGYHG 136

Query: 114 NRFT----MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
           +             I+ P +IK   GG   G+  +         L     ++ +      
Sbjct: 137 DNQDGAFLKSEADRITYPVLIKARAGGGGKGMCRVDSAADFAAALESARREAEASFGDGA 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           +L+E+Y+     +   V GD   +               L+          PA  +  ++
Sbjct: 197 VLVEKYMAKPRHIEVQVFGDNHGNAV-----HLFERDCSLQRRHQKVIEEAPAPGMTEEM 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR----KVFWLEINV 264
              +   A  A   IG  G    +F+ D        + F++E+N 
Sbjct: 252 RAAMGEAAVKAALTIGYSGAGTVEFIADVSEGLRPDRFFFMEMNT 296


>gi|67921146|ref|ZP_00514665.1| Carbamoyl-phosphate synthase, large subunit, glutamine-dependent
           [Crocosphaera watsonii WH 8501]
 gi|67857263|gb|EAM52503.1| Carbamoyl-phosphate synthase, large subunit, glutamine-dependent
           [Crocosphaera watsonii WH 8501]
          Length = 1081

 Score = 77.9 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 54/279 (19%), Positives = 105/279 (37%), Gaps = 36/279 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ + +                     V  V+A  +PD    
Sbjct: 29  SGTQACKALREEGYEVVLVNSNPASIMTDPGMANRTYIEPLTPDMVEKVIAKERPDALLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G    +  V      +L+   +    + + A   + D+   K+ ++  GVPVCPS  
Sbjct: 89  TMGGQTALNVAVALAKNGVLDKYNVELIGAKLPAIKKAEDRDLFKEAMNKIGVPVCPSGI 148

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
              +       + + S P +I+P       G  +    +            +   Q+L+E
Sbjct: 149 ASTLKEAKAIGEEIGSYPLIIRPAFTLGGTGGGIAYNQEEFEEMAQFGIDASPVSQILVE 208

Query: 170 QYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKE 226
           + + G  E    VM D + +V  I   ++    ++       +S  V PA+ +    Y+ 
Sbjct: 209 KSLLGWKEYELEVMRDLADNVVIICSIEN----FDPMGVHTGDSITVAPAQTLTDKEYQR 264

Query: 227 VQRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           ++  +    + IG   G S   F  +PL+  V  +E+N 
Sbjct: 265 LRDYSQAIIREIGVETGGSNIQFSVNPLNGDVIVIEMNP 303



 Score = 50.9 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/205 (13%), Positives = 79/205 (38%), Gaps = 13/205 (6%)

Query: 68  VQAILELLEIPYT----HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--Q 121
           +Q  L+  E P       +   +   + D+ R +++++   +   P+ +   +   +   
Sbjct: 653 LQTYLDSPECPVQTKIWGTSPDSIDTAEDRERFEKILNDLNIKQPPNGIARSYEESAVVS 712

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCG 180
             I  P V++P        + ++  D+ +   +  +        +LI++++ + IE+   
Sbjct: 713 SRIGYPVVVRPSYVLGGRAMEIVYSDEELERYMTYAVQVEPDHPILIDKFLQNAIEVDVD 772

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIG 239
            + DA+  V    + +   +  +    S +S   +P   +  +  + ++        ++ 
Sbjct: 773 ALCDATGKVVIGGIME---HIEQAGVHSGDSACSVPFTTLSSNAIETIRTWTTQLANSLK 829

Query: 240 CRGISRSDFLFDPLSRKVFWLEINV 264
             G+   +  +     +V+ LE N 
Sbjct: 830 VVGL--MNIQYAVQGEQVYILEANP 852


>gi|254705200|ref|ZP_05167028.1| methylcrotonyl-CoA carboxylase [Brucella suis bv. 3 str. 686]
 gi|261755908|ref|ZP_05999617.1| carbamoyl-phosphate synthase subunit L ATP-binding protein
           [Brucella suis bv. 3 str. 686]
 gi|261745661|gb|EEY33587.1| carbamoyl-phosphate synthase subunit L ATP-binding protein
           [Brucella suis bv. 3 str. 686]
          Length = 655

 Score = 77.9 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 39/225 (17%), Positives = 73/225 (32%), Gaps = 22/225 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      +E   + +      A      K  +K ++   GVPV P    
Sbjct: 77  AIHPGYGFLSENPAFVDAVEEAGLIFIGPSAKAIRAMGLKDAAKALMEKAGVPVVPGYHG 136

Query: 114 NRFT----MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
           +             I+ P +IK   GG   G+  +         L     ++ +      
Sbjct: 137 DNQDGAFLKSEADRITYPVLIKARAGGGGKGMCRVDSAADFAAALESARREAEASFGDGA 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           +L+E+Y+     +   V GD   +               L+          PA  +  ++
Sbjct: 197 VLVEKYMAKPRHIEVQVFGDNHGNAV-----HLFERDCSLQRRHQKVIEEAPAPGMTEEM 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR----KVFWLEINV 264
              +   A  A   IG  G    +F+ D        + F++E+N 
Sbjct: 252 RAAMGEAAVKAALTIGYSGAGTVEFIADVSEGLRPDRFFFMEMNT 296


>gi|118576840|ref|YP_876583.1| biotin carboxylase [Cenarchaeum symbiosum A]
 gi|118195361|gb|ABK78279.1| biotin carboxylase [Cenarchaeum symbiosum A]
          Length = 476

 Score = 77.9 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 38/219 (17%), Positives = 75/219 (34%), Gaps = 17/219 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+G   A+ E   I +      +  L  DKM  K  +    VP  P    
Sbjct: 61  AIHPGYGFLSENGEFAALCEKNRINFIGPSAKSMNLCGDKMECKAAMLKADVPTVPGSPG 120

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSWNHGDQ 165
            +            I  P ++K + GG   GI + + +  +         +S +      
Sbjct: 121 LVGSADEAAGIASKIGYPVLLKSVFGGGGRGIRLAEDEGGLRGGYDSATAESIAAVGKSA 180

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           +L+E+++     +   +  D   +   I   +        K             +  D  
Sbjct: 181 ILVEKFLKRTRHIEYQMARDKHGNAVHIFERECSIQRRNQK----LIEQTPSPVMDEDTR 236

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
           K +  L   A +A+    +  ++F     S + +++EIN
Sbjct: 237 KRIGDLVVKAAEAVDYTNLGTAEF-LRADSGEFYFIEIN 274


>gi|39936238|ref|NP_948514.1| carbamoyl-phosphate synthase L chain ATP-binding [Rhodopseudomonas
           palustris CGA009]
 gi|192291955|ref|YP_001992560.1| carbamoyl-phosphate synthase L chain ATP-binding [Rhodopseudomonas
           palustris TIE-1]
 gi|39650093|emb|CAE28616.1| propionyl-CoA carboxylase precursor, biotin carrier protein
           [Rhodopseudomonas palustris CGA009]
 gi|192285704|gb|ACF02085.1| Carbamoyl-phosphate synthase L chain ATP-binding [Rhodopseudomonas
           palustris TIE-1]
          Length = 671

 Score = 77.9 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 76/221 (34%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H  +G   E       L    I +      A A   DK+ SK+  +   V   P  L 
Sbjct: 77  AVHPGYGFLSEREAFPRALAEAGIVFIGPNPGAIAAMGDKIESKKAAAQAKVSTVPGFLG 136

Query: 113 ---VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSWNHGDQ 165
                +  +     I  P +IK   GG   G+ +      +     L   ++ +    D+
Sbjct: 137 VIEDAKHAVKIADEIGYPVMIKASAGGGGKGMRIAHSTAEVAEGFNLAKAEAKASFGDDR 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+++ D   +   V+GD   +V  +   +        K          P+ +  ++ 
Sbjct: 197 VFIEKFIVDPRHIEIQVLGDKHGNVIYLGERECSIQRRNQK-----VIEEAPSPLLDEVT 251

Query: 225 KE-VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +  +   A    +A+        +F      +  ++LE+N 
Sbjct: 252 RRKMGEQAVALAKAVNYDSAGTVEF-VAGQDKSFYFLEMNT 291


>gi|237749258|ref|ZP_04579738.1| pyruvate carboxylase [Oxalobacter formigenes OXCC13]
 gi|229380620|gb|EEO30711.1| pyruvate carboxylase [Oxalobacter formigenes OXCC13]
          Length = 1238

 Score = 77.9 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 40/223 (17%), Positives = 89/223 (39%), Gaps = 22/223 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---- 109
            +H  +G   ED L   + E   I +  +   A     +K++++ +    GVPV P    
Sbjct: 91  AMHPGWGFASEDMLFPKLAEEAGITFIGASADAMYKLGNKVQARIIARQVGVPVVPGSDD 150

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
           S+ V +     +  I  P ++K   GG   GI  +   + +    +++S+         +
Sbjct: 151 SVDVEQARAIIEE-IGLPIMLKAEGGGGGRGIFRVTNQEELEDAFMKASAMAQASFGNPR 209

Query: 166 LLIEQYVDGI-ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK---IPL 221
           L +E+Y+  +  +   V+ D         V   D     ++ ++     + P+    I  
Sbjct: 210 LFVEKYLPNVHHIEIQVIADR-----WGNVFAFDERDCTVQRNNQKLIEITPSPWKGITP 264

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           ++ ++++  A     A+G   ++  +FL        + +E+N 
Sbjct: 265 ELREQLKEYARRMVLAVGYHSVATVEFLVTE-DSTPYMIEVNT 306


>gi|149914457|ref|ZP_01902988.1| pyruvate carboxylase [Roseobacter sp. AzwK-3b]
 gi|149811976|gb|EDM71809.1| pyruvate carboxylase [Roseobacter sp. AzwK-3b]
          Length = 1146

 Score = 77.9 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 33/199 (16%), Positives = 71/199 (35%), Gaps = 15/199 (7%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIK 131
            I +            DK  +++V    GVPV P+  V    MD+       I  P ++K
Sbjct: 102 GITFIGPKADTMRALGDKASARRVAIEAGVPVIPATEVLGEDMDAIRREAAEIGYPLMLK 161

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQ-----SSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186
              GG   G+  I     +   +L+      +++ +G+  L +  +    +   ++GD  
Sbjct: 162 ASWGGGGRGMRPINGPDELAEKVLEGRREAEAAFGNGEGYLEKMILRARHVEVQILGDKH 221

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISR 245
                  +         ++  +       PA  +      E+  L +   + +       
Sbjct: 222 G-----QMYHLFERDCSVQRRNQKVVERAPAPYLTDLQRAEICELGYKICKHVNYECAGT 276

Query: 246 SDFLFDPLSRKVFWLEINV 264
            +FL D  + + +++E+N 
Sbjct: 277 VEFLMDMDTSQFYFIEVNP 295


>gi|329894561|ref|ZP_08270369.1| Geranyl-CoA carboxylase biotin-containing subunit [gamma
           proteobacterium IMCC3088]
 gi|328922999|gb|EGG30325.1| Geranyl-CoA carboxylase biotin-containing subunit [gamma
           proteobacterium IMCC3088]
          Length = 663

 Score = 77.9 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 39/232 (16%), Positives = 80/232 (34%), Gaps = 15/232 (6%)

Query: 42  VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +  V   +  D      +G   E+           I +     +A  +  DK R+K+ + 
Sbjct: 68  ILDVAKRMGADAVHPG-YGFLSENAGFAKACAEAGILFVGPPTVAIDVMGDKARAKRAML 126

Query: 102 SCGVPVCPSILVNRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
             GVP  P       +++    +   I  P ++K   GG   G+ ++ ++  +   +  +
Sbjct: 127 EAGVPCVPGYQDEDQSIERLTSAAKAIGMPVMVKAAAGGGGRGMRLVHQESELESAIHMA 186

Query: 158 SSWNHG----DQLLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212
            S         +L+IE+  +    +   V  D   +   +            K       
Sbjct: 187 HSEAQNAFGSSELIIEKAIIRPRHVEIQVFADEFGNTVHLGERDCSVQRRHQK----VIE 242

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
                 +  D+   +   A  A +A+   G    +FL D  S + ++LE+N 
Sbjct: 243 ESPCPVMTDDLRAAMGEAAIGAAKAVNYVGAGTVEFLLD-QSGEFYFLEMNT 293


>gi|209966785|ref|YP_002299700.1| acetyl-CoA carboxylase biotin carboxylase subunit, putative
           [Rhodospirillum centenum SW]
 gi|209960251|gb|ACJ00888.1| acetyl-CoA carboxylase biotin carboxylase subunit, putative
           [Rhodospirillum centenum SW]
          Length = 644

 Score = 77.9 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 74/220 (33%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+           + +      A      K  +K+ V++ GVPV P    
Sbjct: 79  AVHPGYGFLSENADFAQACRDAGLVFVGPSPEAIRAMGSKRLAKERVAAVGVPVLPGYSG 138

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
                +        +  P ++K   GG   G+ ++     +P  + ++ +         +
Sbjct: 139 AAQDEETLLREAERVGLPLMVKASAGGGGRGLRLVTDAADLPGQIARARAEAQSSFGDGE 198

Query: 166 LLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           L++E+  ++   +   V GD    +  +            K             +  +I 
Sbjct: 199 LILERALIEPRHVEIQVFGDRFGTLVHLGERDCSVQRRHQK----VVEEAPSPAVTPEIR 254

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +   A  A +A+   G    +FL D      +++E+N 
Sbjct: 255 AAMGEAAVTAARAVDYVGAGTVEFLLD-RDGGFYFMEMNT 293


>gi|167630179|ref|YP_001680678.1| carbamoyl-phosphate synthase, large subunit [Heliobacterium
           modesticaldum Ice1]
 gi|167592919|gb|ABZ84667.1| carbamoyl-phosphate synthase, large subunit [Heliobacterium
           modesticaldum Ice1]
          Length = 1063

 Score = 77.9 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 38/262 (14%), Positives = 93/262 (35%), Gaps = 21/262 (8%)

Query: 38  VDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSK 97
           +   V  VLA  KP        G    +  +   L+        + +     + D+ R  
Sbjct: 610 LSEDVVHVLAKEKPQGVIVQFGGQTAIN--LAGPLQKAGFNILGTSVDDIDRAEDRDRFD 667

Query: 98  QVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
           QV++  G+   P          ++    I  P +++P        + ++  D+ +   + 
Sbjct: 668 QVLTELGITKPPGRTATSVEGALEVAREIGYPVLVRPSYVLGGRAMEIVYNDEDLESYMA 727

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDAS---LDVTEIAVPKSDFYSYELKYSSLNST 212
            +   N    +L+++Y+ G E+    + D     +      V ++  +S        +ST
Sbjct: 728 NAVKVNPEHPVLVDKYLIGTEIEVDAIADGEQVLIPGIMEHVERAGVHS-------GDST 780

Query: 213 HVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271
            V PA+ +  +    +          +  RG+    ++      +++ +E+N +   T  
Sbjct: 781 AVFPAQGLTKEQTDRIIDYTTRLALHLNIRGVVNIQYVMHE--GQIYVIEVNPRSSRT-- 836

Query: 272 SIFPEMAAYAGYSFRELLLWMV 293
              P ++   G    ++   ++
Sbjct: 837 --VPYLSKVTGIPIIKIATRII 856



 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 48/286 (16%), Positives = 102/286 (35%), Gaps = 33/286 (11%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI---------DVD------------RSVGLV 45
           G ++E + +   G     AL + G +V  +         D +              V  +
Sbjct: 11  GQAAEFDYA---GTQACGALREEGLEVILVNSNPATIMTDANIADRVYIEPLTPEFVTRI 67

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           L   +PD     L G  G +         +L+ L +    + + A   + D+   K ++ 
Sbjct: 68  LRKERPDGLLPTLGGQVGLNIARSLAKSGVLDELGVRLLGTPLAAIEKAEDRELFKAMME 127

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G PV  S +V      +     +  P +I+P       G  +    +S+    ++   
Sbjct: 128 QIGEPVPESTIVESVEAALAFGEKVGFPLIIRPAYTLGGTGGGIATDMESLKTYAIKGLK 187

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   Q+L+E+ V G  E+   V+ D + +   I V   +       ++  +        
Sbjct: 188 HSAIHQILVERSVAGWKEIEYEVIRDGADN--CITVCNMENIDPVGVHTGDSIVVAPSQT 245

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +    Y+ ++  +    +A+G  G     +  +P S +   +E+N 
Sbjct: 246 LSDKEYQMLRTASLKIIRALGIEGGCNVQYALNPKSFEYIVIEVNP 291


>gi|91976903|ref|YP_569562.1| acetyl-CoA carboxylase biotin carboxylase subunit [Rhodopseudomonas
           palustris BisB5]
 gi|91683359|gb|ABE39661.1| biotin carboxylase / acetyl-coenzyme A carboxylase carboxyl
           transferase subunit alpha [Rhodopseudomonas palustris
           BisB5]
          Length = 451

 Score = 77.9 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 75/220 (34%), Gaps = 18/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     IL    + +         L  DK+ +K+     G+PV P    
Sbjct: 77  AVHPGYGFLSENARFAEILADHNLQFIGPKAEHIRLMGDKIEAKKTAKRLGIPVVPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
            +  +   M     I  P ++K   GG   G+ V    + + + +     ++ +      
Sbjct: 137 AVGPDDDAMSIAKEIGFPVLVKAAAGGGGRGMKVAHTAEDLSMAISTAGNEAKAAFGDAS 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+Y+     +   ++GD       +            K             I  +  
Sbjct: 197 VYLEKYLQKPRHIEIQILGDGRGGAIHLGERDCSLQRRHQK----VWEESPSPVISAEAR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +  +   A Q +   G+   +FL+     + +++E+N 
Sbjct: 253 ARIGGICAKAMQDMNYVGVGTIEFLY--EDGEFYFIEMNT 290


>gi|28209905|ref|NP_780849.1| biotin carboxylase [Clostridium tetani E88]
 gi|28202340|gb|AAO34786.1| biotin carboxylase [Clostridium tetani E88]
          Length = 446

 Score = 77.9 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 84/221 (38%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC----P 109
            +H  FG   E+     +     I +            +K  +++++   GV V      
Sbjct: 77  AIHPGFGFLSENSKFANMCRECNIVFIGPDSEIIEKMGNKSNARRIMEEAGVAVVSGSKK 136

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS-----SSWNHGD 164
            I  +   ++    I  P +IK   GG   GI ++K+++ +   +  +     S++   D
Sbjct: 137 PIERSEEALELAEKIGYPVIIKASAGGGGRGIRIVKENEELIEAIDTAKKEALSAFG-DD 195

Query: 165 QLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            + +E+Y++    +   ++GD   ++  +            K             I  ++
Sbjct: 196 SMYMEKYIECPKHVEIQILGDNYGNIVYLGERDCSIQRRNQKIL----EEAPCTVITQEL 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +++   A  A + +G +     +FL D  +   +++E+N 
Sbjct: 252 REKMGDAAVRAAKYVGYKNAGTIEFLLDKSNN-FYFMEMNT 291


>gi|255020196|ref|ZP_05292265.1| Biotin carboxylase of acetyl-CoA carboxylase [Acidithiobacillus
           caldus ATCC 51756]
 gi|254970338|gb|EET27831.1| Biotin carboxylase of acetyl-CoA carboxylase [Acidithiobacillus
           caldus ATCC 51756]
          Length = 448

 Score = 77.9 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 77/222 (34%), Gaps = 19/222 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H  +G   E+      +E     +         L  DK+ +KQ +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAERVEKSGFAFIGPRPETIRLMGDKIAAKQAMLKAGVPCVPGSDG 136

Query: 113 ----VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
                          I  P ++K   GG   G+ V+  +  +   +     +++      
Sbjct: 137 PLPDAPEAIKALAREIGYPVILKAAGGGGGRGMRVVHTEAHLMNAVNLTRAEAARAFGNP 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            L +E++++    +   V+ DA                   +          PA  I  +
Sbjct: 197 VLYMEKFLETPRHIEFQVLCDAHGHCI-----HLGERDCSTQRRHQKVIEEAPAPGIHPE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             + +      A + +G RG    +FL++P+S   +++E+N 
Sbjct: 252 QRERIGAAVVQACELMGYRGAGTIEFLYEPVSETFYFIEMNT 293


>gi|253580794|ref|ZP_04858057.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251847864|gb|EES75831.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 449

 Score = 77.9 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 80/221 (36%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  FG   E+       +   I +            +K  +++ +   GVPV P    
Sbjct: 77  AIHPGFGFLSENSEFVRKCKENGITFIGPDADVIDKMGNKSHARKTMMDAGVPVVPGTKE 136

Query: 114 NRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIP-----LDLLQSSSWNHGD 164
             +  ++       I  P +IK   GG   G+ V   +              ++++   D
Sbjct: 137 PVYDAETGKKLAEEIGYPVMIKASSGGGGKGMRVAANEDEFEFQFNMAQRESANAFG-DD 195

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            + IE++V+    +   +M D+  +V  +            K    +     PA I  + 
Sbjct: 196 TMYIERFVENPRHVEIQIMADSHGNVVALGERDCSVQRNHQKLIEESP---SPA-IDEET 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +++   A LA + +G       +F+ DP     +++E+N 
Sbjct: 252 RRKMNEYAVLAAKTVGYTNAGTIEFIVDPKGN-FYFMEMNT 291


>gi|228928994|ref|ZP_04092026.1| Pyruvate carboxylase [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228830801|gb|EEM76406.1| Pyruvate carboxylase [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 1148

 Score = 77.9 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 31/243 (12%), Positives = 83/243 (34%), Gaps = 21/243 (8%)

Query: 35  QIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSM 91
            ID    +  ++   K +   + +H  +G   E+       E   I +         +  
Sbjct: 62  PIDAYLDIEGIIEIAKSNHV-DAIHPGYGFLSENIQFAKRCEEEGIIFIGPKSKHLDMFG 120

Query: 92  DKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147
           DK++++       +PV P     +       +       P +IK   GG   G+ +++  
Sbjct: 121 DKVKARTQAQLAQIPVIPGSDGPVDSLEEVKEFAENYDYPIIIKASLGGGGRGMRIVRTS 180

Query: 148 QSIPL----DLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSY 202
           + +         ++ +    D++ +E++V+    +   ++ D   +V  +          
Sbjct: 181 EELRESYNRAKSEAKAAFGNDEVYVEKFVEKPKHIEVQILADEEGNVVHLYE-----RDC 235

Query: 203 ELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
            ++        + P   +  D+ + +   A    + +        +FL        +++E
Sbjct: 236 SVQRRHQKVVEIAPSVSLSDDLRQRICEAAVKLTKNVNYLNAGTVEFLV--KDDNFYFIE 293

Query: 262 INV 264
           +N 
Sbjct: 294 VNP 296


>gi|170781746|ref|YP_001710078.1| pyruvate carboxylase [Clavibacter michiganensis subsp. sepedonicus]
 gi|169156314|emb|CAQ01462.1| pyruvate carboxylase [Clavibacter michiganensis subsp. sepedonicus]
          Length = 1133

 Score = 77.9 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 39/251 (15%), Positives = 88/251 (35%), Gaps = 20/251 (7%)

Query: 27  EDAGFKVS-QIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
            + G  V   +DVD  + + L     D  +   +G   E+  +        I +      
Sbjct: 52  REEGHPVRAYLDVDEIIRVAL-ECGADAIYPG-YGFLSENPDLARAAAANGIVFIGPDAG 109

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRFT---MDSQHLISPPYVIKPLKGGSSLGII 142
              ++ +K+ +K+  ++ GVPV  S   +      ++    I  P   K + GG   G+ 
Sbjct: 110 VLEMAGNKVTAKEHATAAGVPVLASTPPSTDVGLLLEQAEGIGFPIFAKAVAGGGGRGMR 169

Query: 143 VIKKDQSIPLDLLQS-----SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKS 197
            +++ + +   L  +     S++      L +  +    +   ++ DA+ +         
Sbjct: 170 RVERPEDLEEALRAAMREADSAFGDPTMFLEQAVLRPRHIEVQILADATGETV-----HL 224

Query: 198 DFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS-- 254
                 ++        + PA  +   I   +   A    ++IG       +FL D     
Sbjct: 225 FERDCSVQRRHQKVVEIAPAPNLDPAIRDAMHAHAVAFARSIGYVNAGTVEFLLDTDGPR 284

Query: 255 -RKVFWLEINV 264
             +  ++E+N 
Sbjct: 285 AGQHVFIEMNP 295


>gi|163760009|ref|ZP_02167093.1| probable pyruvate carboxylase protein [Hoeflea phototrophica
           DFL-43]
 gi|162282967|gb|EDQ33254.1| probable pyruvate carboxylase protein [Hoeflea phototrophica
           DFL-43]
          Length = 1152

 Score = 77.9 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 31/199 (15%), Positives = 71/199 (35%), Gaps = 15/199 (7%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIK 131
            I +            +K+ ++ +    GVPV P+       MD        I  P ++K
Sbjct: 107 GIVFIGPRPDTMRRLGNKVAARTLAIEIGVPVVPATEPLPDDMDEVARMAEEIGYPIMLK 166

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQLLIEQYVD-GIELTCGVMGDAS 186
              GG   G+  I+  + +  ++ ++          D++ +E+ V+    +   ++GD  
Sbjct: 167 ASWGGGGRGMRAIRDPKDLVREVTEAKREAMAAFGKDEVYLEKLVERARHVESQILGDTH 226

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISR 245
            +               ++  +       PA  +     +E+   +     A G  G   
Sbjct: 227 GNAV-----HLFERDCSVQRRNQKVVERAPAPYLTEAQRQELAAYSLKIANATGYVGAGT 281

Query: 246 SDFLFDPLSRKVFWLEINV 264
            ++L D  +   +++E+N 
Sbjct: 282 VEYLMDIDTGAFYFIEVNP 300


>gi|187477421|ref|YP_785445.1| carbamoyl phosphate synthase large subunit [Bordetella avium 197N]
 gi|115422007|emb|CAJ48529.1| carbamoyl-phosphate synthase large chain [Bordetella avium 197N]
          Length = 1079

 Score = 77.9 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 46/298 (15%), Positives = 106/298 (35%), Gaps = 35/298 (11%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ------ 69
           AL + GF+   +         D D S  L    L  +    ++H       +VQ      
Sbjct: 589 ALREDGFETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVHKENPVGMIVQYGGQTP 648

Query: 70  ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHL 123
                 LE   +P   +   +  ++ D+ R +++++  G+   P+         +     
Sbjct: 649 LKLARALEANGVPIIGTSPESIDVAEDRERFQKLLNKLGLRQPPNRTARTEAEALAHAAE 708

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVM 182
           I  P V++P        + ++ + Q +   + ++   ++   +L+++++ +  E+    +
Sbjct: 709 IGYPLVVRPSYVLGGRAMEIVHEQQDLERYMREAVKVSNDSPVLLDRFLNNATEVDVDCL 768

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D         +   +       +S  ++  + P  +  DI  E++R      +A+   G
Sbjct: 769 ADGETVFIGGVMEHIEQAGV---HSGDSACSLPPYSLSADIVAEIKRQTTTMARALNVSG 825

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           +    F        V+ LE+N +   T     P ++   G      L  +   A   R
Sbjct: 826 LMNVQFAV--QDGDVYVLEVNPRASRT----VPYVSKATGLQ----LAKIAARAMAGR 873



 Score = 55.9 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 44/285 (15%), Positives = 98/285 (34%), Gaps = 42/285 (14%)

Query: 18  SGKACASALEDAGF-------------------KVSQIDVD--RSVGLVLAHLKPDLAFN 56
           SG     AL+  G+                    V+ I+    ++V  ++   +PD    
Sbjct: 29  SGAQACKALKAEGYRTILVNSNPATIMTDPETADVTYIEPITWQAVEKIIERERPDALLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      +L   ++    +   A   + D+ + K  ++  G+    S +
Sbjct: 89  TMGGQTALNCALDLAHNGVLAKYKVELIGANEHAIEKAEDRQKFKMAMNDIGLESAKSGV 148

Query: 113 VNRFTMDSQ---------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
            +      +              P VI+P       G  +    +       +    +  
Sbjct: 149 AHTMEEAWEVQRRIAAEIGTSGFPAVIRPSFTLGGTGGGIAYNAEEFETICRRGLEASPT 208

Query: 164 DQLLIEQYVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IP 220
           ++LLIE+ + G  E    V+ D + + +   ++   D           +S  V PA+ + 
Sbjct: 209 NELLIEESLLGWKEFEMEVVRDKADNCIIVCSIENLDPMGVHT----GDSITVAPAQTLT 264

Query: 221 LDIYKEVQRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
              Y+ ++  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 DKEYQIMRDASIAVLREIGVDTGGSNVQFAVNPKNGRMIVIEMNP 309


>gi|258515796|ref|YP_003192018.1| acetyl-CoA carboxylase, biotin carboxylase [Desulfotomaculum
           acetoxidans DSM 771]
 gi|257779501|gb|ACV63395.1| acetyl-CoA carboxylase, biotin carboxylase [Desulfotomaculum
           acetoxidans DSM 771]
          Length = 447

 Score = 77.9 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 85/221 (38%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---S 110
            +H  +G   E+       E  +I +    + A  +  +K  +++ +   GVPV P   S
Sbjct: 77  AIHPGYGFLAENAGFAEKCESCKITFIGPSVKAIEMMGNKSVARETMIKEGVPVVPGTES 136

Query: 111 ILVN-RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS-----SSWNHGD 164
           I+ +    ++  + +  P +IK   GG   G+ V      +   +  +     S++   D
Sbjct: 137 IIKDINEALELANGMGYPVLIKASAGGGGRGMRVAHSKDDLERSIQAAQSEAQSAFGCAD 196

Query: 165 QLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            + +E+YV+    +   ++GD   ++  +            K             +  ++
Sbjct: 197 -VYLEKYVEEPRHIEFQILGDKFDNIVYLGERDCSIQRRNQK----VIEESPSTALTPEL 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              +   A  A +++G       +FL D  +   +++E+N 
Sbjct: 252 RSRMGEAAVKAARSVGYHNAGTIEFLLD-RNNNFYFIEMNT 291


>gi|254477211|ref|ZP_05090597.1| RimK-like ATP-grasp domain family protein [Ruegeria sp. R11]
 gi|214031454|gb|EEB72289.1| RimK-like ATP-grasp domain family protein [Ruegeria sp. R11]
          Length = 681

 Score = 77.9 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 75/221 (33%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      LE   + +      A     DK+ SK++    GV   P  + 
Sbjct: 77  AVHPGYGFLSENAKFAEALEAAGVAFVGPPKGAIEAMGDKITSKKIAQEAGVSTVPGYMG 136

Query: 114 NRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGD 164
                +      + I  P +IK   GG   G+ +   D              ++S+   D
Sbjct: 137 LIEDAEEAVKISNEIGYPVMIKASAGGGGKGMRIAWNDDEAREGFQSSKNEAANSFG-DD 195

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           ++ IE++V     +   V+ DA  +   +   +        K             +  + 
Sbjct: 196 RIFIEKFVTQPRHIEIQVLCDAHGNGIYLGERECSIQRRNQK----VVEEAPSPFLDEET 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +   +    +A+G       +F+ D      ++LE+N 
Sbjct: 252 RRAMGEQSVALAKAVGYASAGTVEFIVDGEKN-FYFLEMNT 291


>gi|206970978|ref|ZP_03231929.1| pyruvate carboxylase [Bacillus cereus AH1134]
 gi|229180222|ref|ZP_04307566.1| Pyruvate carboxylase [Bacillus cereus 172560W]
 gi|206733750|gb|EDZ50921.1| pyruvate carboxylase [Bacillus cereus AH1134]
 gi|228603431|gb|EEK60908.1| Pyruvate carboxylase [Bacillus cereus 172560W]
          Length = 1148

 Score = 77.9 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 31/243 (12%), Positives = 83/243 (34%), Gaps = 21/243 (8%)

Query: 35  QIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSM 91
            ID    +  ++   K +   + +H  +G   E+       E   I +         +  
Sbjct: 62  PIDAYLDIEGIIEIAKSNHV-DAIHPGYGFLSENIQFAKRCEEEGIIFIGPKSKHLDMFG 120

Query: 92  DKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147
           DK++++       +PV P     +               P +IK   GG   G+ +++  
Sbjct: 121 DKVKARTQAQLAQIPVIPGSDGPVNSLEEVKKFAEKYDYPIIIKASLGGGGRGMRIVRTS 180

Query: 148 QSIPL----DLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSY 202
           + +         ++ +    D++ +E++V+    +   ++ D   +V  +          
Sbjct: 181 EELGESYNRAKSEAKAAFGNDEVYVEKFVEKPKHIEVQILADEEGNVVHLYE-----RDC 235

Query: 203 ELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
            ++        + P   +  D+ + +   A    + +        +FL      + +++E
Sbjct: 236 SVQRRHQKVVEIAPSVSLSDDLRQRICDAAVKLTKNVNYLNAGTVEFLV--KDDEFYFIE 293

Query: 262 INV 264
           +N 
Sbjct: 294 VNP 296


>gi|89068690|ref|ZP_01156076.1| acetyl-CoA carboxylase [Oceanicola granulosus HTCC2516]
 gi|89045653|gb|EAR51715.1| acetyl-CoA carboxylase [Oceanicola granulosus HTCC2516]
          Length = 452

 Score = 77.9 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 50/255 (19%), Positives = 90/255 (35%), Gaps = 23/255 (9%)

Query: 26  LEDAGFKV-------SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIP 78
           L D G ++       S +DVDR V         D      +G   E       +E   + 
Sbjct: 47  LADEGVEIGPAQATKSYLDVDRVVAAA-RESGADAVHPG-YGFLSESPRFARAVEAAGLI 104

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLK 134
           +            DK R+++   + GVPV P     I            +  P +IK   
Sbjct: 105 FVGPSADTIERMGDKARARETAIAAGVPVTPGSDGRIESVEAAARIAGELGYPVMIKAAA 164

Query: 135 GGSSLGIIVIKKDQSI----PLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDV 189
           GG   GI VI+ +  +    P    ++ +      L +E++VD    +   ++GD     
Sbjct: 165 GGGGRGIRVIESEADLAKQMPAAQSEAEAAFGDGGLYMERFVDKARHVEVQILGDGD-RA 223

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
                 +        K           A +  +  + +   A    +++G RG    ++L
Sbjct: 224 VHAWERECSLQRRRQK----VWEEAPAACLSQEEREALCASAVRLAESVGYRGAGTLEYL 279

Query: 250 FDPLSRKVFWLEINV 264
           FD   R+ +++E+N 
Sbjct: 280 FDEARREFYFIEMNT 294


>gi|71899706|ref|ZP_00681858.1| Acetyl-CoA carboxylase, biotin carboxylase [Xylella fastidiosa
           Ann-1]
 gi|71730501|gb|EAO32580.1| Acetyl-CoA carboxylase, biotin carboxylase [Xylella fastidiosa
           Ann-1]
          Length = 455

 Score = 77.9 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 40/225 (17%), Positives = 82/225 (36%), Gaps = 27/225 (12%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+      +E     +         L  DK+++   + + GVP  P    
Sbjct: 77  AIHPGYGFLSENASFAERVEQSGFIFIGPRAETIRLMGDKVQAIHAMKAAGVPCVPGSDG 136

Query: 111 -----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWN 161
                I+ N   +     I  P +IK   GG   G+ V+  +  +   +     ++ +  
Sbjct: 137 PLGDDIVAN---VKIAREIGYPVIIKAAGGGGGRGMRVVHTEAGLEAAIETTQCEAKAAF 193

Query: 162 HGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-I 219
              Q+ +E++++    +   V+ D   +   +            K          PA  I
Sbjct: 194 GNGQVYMEKFLENPRHVEIQVLADGQGNAIHLGERDCSMQRRHQK-----VVEEAPAPGI 248

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              +  E+ ++   A   IG RG    +FLF   + + +++E+N 
Sbjct: 249 TEALRNEIGQVCVDACIRIGYRGAGTFEFLF--ENGRFYFIEMNT 291


>gi|301168427|emb|CBW28017.1| putative biotin carboxylase [Bacteriovorax marinus SJ]
          Length = 482

 Score = 77.9 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 41/287 (14%), Positives = 88/287 (30%), Gaps = 48/287 (16%)

Query: 19  GKACASALEDAGFKVSQIDVD-----------------------------RSVGLVLAHL 49
               A A  + G     I  D                              ++  V+   
Sbjct: 21  ASRIAKACRELGHTAIGIWTDNEVHATHLQFCDEWVHLKGSTNAETYLNIDNLVKVIKEN 80

Query: 50  KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109
             D      +G   E+      +E   I +    +    +  DK  SKQ+ +  GVP  P
Sbjct: 81  NVDAVHPG-YGFLSENADFAKRMESEGIVFIGPNVECIKVMGDKATSKQLANQVGVPTVP 139

Query: 110 S----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWN 161
                +      ++    I  P ++K + GG   G+     ++ +  +      +S +  
Sbjct: 140 GTDKAVESVEEAVEISAKIGYPVLLKAVAGGGGRGMRACANEEEVRANFEAVGRESLAAF 199

Query: 162 HGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI- 219
           +   LL+E+ + +   +   ++ D   +V      +        K          P+   
Sbjct: 200 NNGDLLVEKLIVNPRHIEVQILADKKGNVYHFFERECSIQRRHQK-----IIEEAPSPFI 254

Query: 220 --PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
               ++ + V   A    +A+        +F+     +  ++LE+N 
Sbjct: 255 GDDEELRQNVCETAVKLAKAVNYDSAGTVEFIM-GEDKSFYFLEMNT 300


>gi|251797846|ref|YP_003012577.1| carbamoyl-phosphate synthase, large subunit [Paenibacillus sp.
           JDR-2]
 gi|247545472|gb|ACT02491.1| carbamoyl-phosphate synthase, large subunit [Paenibacillus sp.
           JDR-2]
          Length = 1072

 Score = 77.9 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 47/286 (16%), Positives = 108/286 (37%), Gaps = 33/286 (11%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQIDVDRS---------------------VGLV 45
           G ++E + +   G     AL++ G++V  I+ + +                     V  +
Sbjct: 21  GQAAEFDYA---GTQACQALKEEGYEVVLINSNPATIMTDTNMADKVYIEPITLDFVSQI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   +PD     L G  G +  V+     +LE   +    + + A   + D+   + ++ 
Sbjct: 78  IRQERPDGLLPTLGGQTGLNMAVELARAGVLEQENVKLLGTQLTAIEKAEDRDLFRDLMR 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
               PV  S++V      +   + I  P +++P       G  +   ++ +   +     
Sbjct: 138 ELEQPVPESVIVTTVEEAVTFANEIGYPIIVRPAYTLGGTGGGICGNEEELRETVASGIR 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
           ++   Q L+E+ + G  E+   VM DA+ +   I V   + +     ++  +        
Sbjct: 198 YSPISQCLVEKSIAGMKEVEYEVMRDANNN--CIVVCNMENFDPVGVHTGDSIVVAPSQT 255

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +    Y+ ++  +    +A+   G     F  DP S + + +E+N 
Sbjct: 256 LSDREYQMLRSASLKIIRALNIEGGCNVQFALDPHSFQYYVIEVNP 301



 Score = 72.1 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 42/280 (15%), Positives = 99/280 (35%), Gaps = 33/280 (11%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHG--------NFGEDGL 67
           A+++AG++   I         D   S  L    L  +   NV+           FG    
Sbjct: 589 AIQNAGYEAVIINNNPETVSTDFSTSDRLYFEPLFFEDVMNVIEQEKPIGVIVQFGGQTA 648

Query: 68  V--QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHL 123
           +   A L    +    S + +   + D+ + + ++ +  +       V       ++   
Sbjct: 649 INLAAPLTKAGVRILGSSLESIDTAEDRKKFEALLRNLNIAQPEGSTVTSVDQAVETAQK 708

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           +  P +++P        + ++  D+ +   +  +   N    +LI++Y+ G E     + 
Sbjct: 709 LGYPVLVRPSYVLGGRAMEIVYSDEELLSYMEVAVKINPEHPVLIDRYMLGKEAEVDAIC 768

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRG 242
           D    +    +   +           +S  V P + +  DI  ++  +     +A+   G
Sbjct: 769 DGETVLIPGIMEHIERAGVHS----GDSIAVYPPQSLSDDIKNQIVDITVNIAKALKVIG 824

Query: 243 ISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277
           +    F+    + KV+ +E+N       P ++ V+  P  
Sbjct: 825 LVNIQFVIH--NEKVYVIEVNPRSSRTVPFLSKVTDLPMA 862


>gi|258511291|ref|YP_003184725.1| carbamoyl-phosphate synthase, large subunit [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257478017|gb|ACV58336.1| carbamoyl-phosphate synthase, large subunit [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 1082

 Score = 77.9 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 53/286 (18%), Positives = 111/286 (38%), Gaps = 33/286 (11%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------------- 49
           G ++E + +   G     AL++ G++V  ++ + +  +   H+                 
Sbjct: 21  GQAAEFDYA---GTQACQALKEEGYEVVLVNSNPATIMTDEHMADRVYIEPITLDFVTQI 77

Query: 50  ----KPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
               +PD     L G  G +  VQ     +LE   +    + + A   + D+ + +Q++ 
Sbjct: 78  IRKERPDGLLATLGGQTGLNMAVQLAKAGVLEAEGVELLGTPLEAIEKAEDREKFRQLMQ 137

Query: 102 SCGVPVCPSILV-NRFTMDS-QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G PV  S +V N+   D+    +  P +I+P       G  +    +     + +  +
Sbjct: 138 EIGQPVPRSAIVRNQAEADAFAEEVGFPIIIRPAYTLGGTGGGIASNWREYHEIVERGLT 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   Q+L+EQ + G  E+   VM DA    T I V   +       ++  +        
Sbjct: 198 LSPIHQVLVEQSIAGFKEIEYEVMRDADG--TAIVVCNMENMDPVGVHTGDSIVVAPSQT 255

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +  + Y+ ++  +     A+G +G        DP S + + +E+N 
Sbjct: 256 LSDEEYQMLRDASLQIIHALGIQGGCNVQLALDPDSSRYYVIEVNP 301



 Score = 76.7 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 41/286 (14%), Positives = 99/286 (34%), Gaps = 32/286 (11%)

Query: 25  ALEDAGFKVSQID-------VDRSVGLVLAHLKPDL--AFNVLHGNFGEDGLVQ------ 69
           AL+  G++   I+        D S    L     D+    NV+     E  +VQ      
Sbjct: 591 ALQREGYEAVVINNNPETVSTDFSTSDRLYFEPLDVEDVLNVIDREQPEGVIVQFGGQTA 650

Query: 70  ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHL 123
                 L    +    +   +   + D+ +   +++  G+       V      +++   
Sbjct: 651 INLAGPLADAGVRIFGTSRESIDAAEDREKFDALLTQLGIQRPEGRTVTTVEAAVEAAES 710

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           +  P +++P        + +I     +   + ++   +    +L+++YV+GIE     + 
Sbjct: 711 LGYPVLVRPSYVLGGRAMQIITNTNELLQYMEEAVEVSQQHPVLVDRYVNGIEAEVDAIS 770

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRG 242
           D    +    +   +           +S  V P   +  D+ + ++       Q++  +G
Sbjct: 771 DGETVIIPGIMEHIERAGVHS----GDSIAVYPPQNLTEDVKRIIEDHTIRIAQSLQVKG 826

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           +    F+      +V  +E+N +   T     P ++   G    +L
Sbjct: 827 LMNVQFIVH--DGEVEVIEVNPRSSRT----VPFLSKVTGVPMVQL 866


>gi|154496258|ref|ZP_02034954.1| hypothetical protein BACCAP_00543 [Bacteroides capillosus ATCC
           29799]
 gi|150274341|gb|EDN01418.1| hypothetical protein BACCAP_00543 [Bacteroides capillosus ATCC
           29799]
          Length = 1147

 Score = 77.9 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 43/250 (17%), Positives = 87/250 (34%), Gaps = 24/250 (9%)

Query: 30  GFKVSQIDVDRSVGLVL---AHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSG 83
           G   S +     +  ++      K D     +H  +G   E+       E   I +    
Sbjct: 59  GHNKSPLGAYLDIPAIIDLAKRRKVD----AIHPGYGFLSENPDFARACEEAGIKFIGPS 114

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTMDSQHLI--SPPYVIKPLKGGSSL 139
               A   DK+ +K    +CGVP  P     +       +  I    P ++K   GG   
Sbjct: 115 SEVLARMGDKLAAKATAIACGVPTIPGSDRPLKDADEALEKAISYGFPIILKAAAGGGGR 174

Query: 140 GIIVIKKDQSIPLDLL----QSSSWNHGDQLLIEQY-VDGIELTCGVMGDASLDVTEIAV 194
           G+    K + +         ++      + + IE+Y V+   +   ++GD   +V  +  
Sbjct: 175 GMRRCDKPEEVAPAFELVRNEARKAFGSEDIFIEKYLVEPKHIEVQILGDQYGNVMHLGE 234

Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
                 S + +Y  +   +     +P +I  ++   A    + +G       +FL D   
Sbjct: 235 RD---CSLQRRYQKV-VEYAPAWSVPQEIRDKLHADAVKVAKHVGYVNAGTVEFLVDKDG 290

Query: 255 RKVFWLEINV 264
              +++E+N 
Sbjct: 291 NH-YFIEMNP 299


>gi|110834098|ref|YP_692957.1| acetyl-CoA carboxylase, biotin carboxylase [Alcanivorax borkumensis
           SK2]
 gi|110647209|emb|CAL16685.1| acetyl-CoA carboxylase, biotin carboxylase [Alcanivorax borkumensis
           SK2]
          Length = 669

 Score = 77.9 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 42/227 (18%), Positives = 78/227 (34%), Gaps = 25/227 (11%)

Query: 58  LHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI--- 111
           +H  +G   E+    A  +   I +      A  +  DK  +++++S  GVPV P     
Sbjct: 80  IHPGYGFLSENTDFAAACDQAGIIFVGPNARAIEVMGDKAAARKLMSQSGVPVLPGFDEE 139

Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQL 166
              +     +   +  P +IK + GG   G+ V+         L  +          D++
Sbjct: 140 GASDSELTAAATTVGFPLLIKAVAGGGGKGMRVVNAAGEFDEALAAARREAANAFGDDRV 199

Query: 167 LIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIY 224
           L+E+Y+     +   V  D   +               ++          PA  +     
Sbjct: 200 LLERYLATARHVEVQVFADNHGNAV-----HLFERDCSVQRRHQKIIEEAPAPGLDEATR 254

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLF-------DPLSRKVFWLEINV 264
                 A  A +AI  RG    +FL+       D    + F++E+N 
Sbjct: 255 NAFGHAAVQAAKAIDYRGAGTVEFLYSPPAAGGDADGGQFFFMEMNT 301


>gi|82702072|ref|YP_411638.1| allophanate hydrolase subunit 2 [Nitrosospira multiformis ATCC
           25196]
 gi|82410137|gb|ABB74246.1| Allophanate hydrolase subunit 2 [Nitrosospira multiformis ATCC
           25196]
          Length = 1212

 Score = 77.9 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 39/257 (15%), Positives = 84/257 (32%), Gaps = 30/257 (11%)

Query: 56  NVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
           N +H  +G   E            I +             K  ++++     VP+ P   
Sbjct: 76  NAIHPGYGFLSEKAEFAEQCADHGISFIGPTPHQMRAFGLKHTARKLALQNRVPLLPGTG 135

Query: 113 VNRFTMDS---QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN----HGDQ 165
           +     ++      I  P ++K   GG  +GI +    + +  +                
Sbjct: 136 LLEDLDEALRQAAHIGYPVMLKSTAGGGGIGIRLCWNKEELSANYELVKYLAQNNFKDAG 195

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           L +E+YV+    +   + GD    V  +            K             +P  + 
Sbjct: 196 LFLEKYVEKARHIEVQIFGDGKGGVIALGERDCSMQRRNQK----VIEETPAPDLPPRVR 251

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAY 280
           + +   A    +++  +     +++FD  + + ++LE+N +     G+T           
Sbjct: 252 QALLNAAVRLGKSVNYQSAGTVEYIFDASAAEFYFLEVNTRLQVEHGVTE--------EV 303

Query: 281 AGYSFRELLLWMVEDAS 297
            G    +L+ WMV  A+
Sbjct: 304 TGI---DLVEWMVRQAA 317


>gi|256420566|ref|YP_003121219.1| acetyl-CoA carboxylase, biotin carboxylase [Chitinophaga pinensis
           DSM 2588]
 gi|256035474|gb|ACU59018.1| acetyl-CoA carboxylase, biotin carboxylase [Chitinophaga pinensis
           DSM 2588]
          Length = 494

 Score = 77.9 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 78/220 (35%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      ++   + +      A  +   K+ +KQ     GVP+ P    
Sbjct: 76  AIHPGYGFLSENARFSQAVKDAGLTFIGPSASAIEMMGSKLAAKQAAQRFGVPMVPGTET 135

Query: 114 NRFTMDSQHLI----SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
              +++    +      P +IK   GG   G+ V+   + +   +  + S        D 
Sbjct: 136 PLRSLEEAREVVQKTGFPILIKASAGGGGKGMRVVNAPEELEEQIRLAKSEAMNAFGDDA 195

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+YV     +   V+GD   +   +   +        K           + +  DI 
Sbjct: 196 VFIEKYVGSPRHIEIQVLGDQHGNYVYLFERECSIQRRHQK----LIEEAPSSCLTPDIR 251

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +   A    +A    G    +FL D    K ++LE+N 
Sbjct: 252 EAMGNCALDVARACQYYGAGTVEFLVDEK-LKFYFLEMNT 290


>gi|169351371|ref|ZP_02868309.1| hypothetical protein CLOSPI_02151 [Clostridium spiroforme DSM 1552]
 gi|169291593|gb|EDS73726.1| hypothetical protein CLOSPI_02151 [Clostridium spiroforme DSM 1552]
          Length = 450

 Score = 77.9 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/237 (14%), Positives = 77/237 (32%), Gaps = 21/237 (8%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRS 96
           +++      L  D     +H  FG   E+     ++E   + +         +  +K  +
Sbjct: 64  KNILSAATALGCD----AIHPGFGFLSENSTFARLVEECGMTFIGPSGDIIDMMGNKSMA 119

Query: 97  KQVVSSCGVPVCP----SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152
           +Q +    VPV P    S+            I  P +IK   GG   G+     +     
Sbjct: 120 RQKMIEANVPVVPGSDGSVNTLEDARKVAKEIGFPVLIKASAGGGGRGMRKAFSEDEFDD 179

Query: 153 DL----LQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYS 207
                  ++ +    D + IE+ + +   +   ++ D   +V  +            K  
Sbjct: 180 AYLTAKAEAKACFGDDDMYIEKLILNPKHIEFQILADNYGNVIHLGERDCSIQRRNQKMI 239

Query: 208 SLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
                      +   + +++   A  A +  G R     +++ D      +++E+N 
Sbjct: 240 ----EEAPSKALTPLLRQKMGEDAIKAAKGAGYRNAGTIEYVLD-QDGNYYFIEMNT 291


>gi|313892811|ref|ZP_07826392.1| pyruvate carboxylase [Veillonella sp. oral taxon 158 str. F0412]
 gi|313442742|gb|EFR61153.1| pyruvate carboxylase [Veillonella sp. oral taxon 158 str. F0412]
          Length = 1148

 Score = 77.9 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 97/278 (34%), Gaps = 28/278 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59
           +A+     S E  +SL   +A  + L   G K     +D   +  +      D     +H
Sbjct: 31  VAI----YSKEDTLSLHRNQADEAYLVGEGKKPVDAYLDIEDIIRIAKEHDID----AIH 82

Query: 60  GNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS---ILV 113
             +G   E+       E   I +    I    +  DK+ +++      +P+ P     L 
Sbjct: 83  PGYGFLSENEGFARRCEEEGIIFIGPKIKHLNMFGDKVNAREQAKLAQIPMIPGSDGALK 142

Query: 114 NRFTMDS-QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQLLI 168
           +   ++   +    P +IK + GG   G+  + + + +         ++ +    D + +
Sbjct: 143 DYAQLEEFANTHGFPLMIKAVNGGGGRGMREVHRKEDLRDAYDRAKSEAKAAFGDDDVYV 202

Query: 169 EQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKE 226
           E+ + +   +   ++GD   +V              ++        + PA  + L+  K 
Sbjct: 203 EKLIVEPKHIEVQILGDEHGNVV-----HLHERDCSVQRRHQKVVEMAPAFALSLETRKA 257

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           V   A    + +        +FL        +++E+N 
Sbjct: 258 VCDAAVKIMKNVEYVNAGTVEFLVTA-DGNFYFIEVNP 294


>gi|163857856|ref|YP_001632154.1| carbamoyl phosphate synthase large subunit [Bordetella petrii DSM
           12804]
 gi|163261584|emb|CAP43886.1| carbamoyl-phosphate synthase large chain [Bordetella petrii]
          Length = 1080

 Score = 77.9 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 43/298 (14%), Positives = 107/298 (35%), Gaps = 35/298 (11%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ------ 69
           AL + G++   +         D D S  L    L  +    ++H       +VQ      
Sbjct: 589 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVHKENPVGMIVQYGGQTP 648

Query: 70  ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--FTMDSQHL 123
                 LE   +P   +   +  ++ D+ R +++++  G+   P+         +     
Sbjct: 649 LKLARALEANGVPIIGTSPESIDVAEDRERFQKLLNKLGLRQPPNRTARTEGEALAHAAD 708

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVM 182
           I  P V++P        + ++ + Q +   + ++   ++   +L+++++ +  E+    +
Sbjct: 709 IGYPLVVRPSYVLGGRAMEIVHEQQDLERYMREAVKVSNDSPVLLDRFLNNATEVDVDCL 768

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D         +   +       +S  ++  + P  +  ++  E++R   +  +A+   G
Sbjct: 769 ADGETVFIGGVMEHIEQAGV---HSGDSACSLPPYSLSAEVIAEIKRQTTMMARALNVNG 825

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           +    F        V+ LE+N +   T     P ++   G      L  +   A   R
Sbjct: 826 LMNVQFAI--QGGDVYVLEVNPRASRT----VPYVSKATGLQ----LAKIAARAMAGR 873



 Score = 59.8 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 47/285 (16%), Positives = 98/285 (34%), Gaps = 42/285 (14%)

Query: 18  SGKACASALEDAGF-------------------KVSQIDVD--RSVGLVLAHLKPDLAFN 56
           SG     AL+  G+                    V+ I+    ++V  ++   KPD    
Sbjct: 29  SGAQACKALKAEGYRTILVNSNPATIMTDPETADVTYIEPITWQAVEKIIEREKPDALLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +    Q +L    +    +   A   + D+ + KQ ++  G+    S +
Sbjct: 89  TMGGQTALNCALDLAHQGVLAKHNVELIGANEQAIEKAEDRQKFKQAMTDIGLESAKSGV 148

Query: 113 VNRFTMDSQ---------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
            +      +              P VI+P       G  +    +       +    +  
Sbjct: 149 AHSMDEAWEVQRRIAAETGTSGFPAVIRPSFTMGGSGGGIAYNAEEFETICRRGLEASPT 208

Query: 164 DQLLIEQYVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IP 220
            +LLIE+ + G  E    V+ D + + +   ++   D           +S  V PA+ + 
Sbjct: 209 SELLIEESLLGWKEFEMEVVRDKADNCIIVCSIENLDPMGVHT----GDSITVAPAQTLT 264

Query: 221 LDIYKEVQRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
              Y+ ++  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 DKEYQIMRNASIAVLREIGVDTGGSNVQFAVNPDNGRMIVIEMNP 309


>gi|315103457|gb|EFT75433.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium
           acnes HL050PA2]
          Length = 1068

 Score = 77.9 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 43/297 (14%), Positives = 106/297 (35%), Gaps = 36/297 (12%)

Query: 24  SALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLV------ 68
            A++ AG++   +         D   S  L    L  +   NV+      DG++      
Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSISDKLYFEPLTFEDVMNVID-LEQPDGVIVQFGGQ 637

Query: 69  -----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ-- 121
                   L    +P   + +     + D+   + +++  G+P  P              
Sbjct: 638 TAINLAGPLSAAGVPILGTQVADLDRAEDREGFESLLAELGIPQAPGGTARSSEEAFAVA 697

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
             +  P +++P        + ++   + +   +  +   +    +L+++Y++G+E     
Sbjct: 698 EELGYPVLVRPSYVIGGRAMAIVTSAEELKRYMRDAVHASPDKPVLVDRYLNGLECEVDA 757

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGC 240
           + D     T++ +P    +       S +S  V P  ++   +   +  +     + +  
Sbjct: 758 ICDG----TDVLIPGIMEHIERAGVHSGDSMAVYPPQRMSQQVADRIIEVTTKLAKGLKT 813

Query: 241 RGISRSDFLF--DPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +GI    F+   DP + +  V+ +E N +   T     P ++   G S  E+   ++
Sbjct: 814 KGILNIQFVVADDPATGEETVYVIEANPRASRT----VPFLSKVTGVSMAEVATRII 866



 Score = 71.3 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 45/268 (16%), Positives = 99/268 (36%), Gaps = 30/268 (11%)

Query: 25  ALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNVLHGNFG 63
           AL++ G++V  ++        DR V                +L    PD     L G  G
Sbjct: 36  ALKEEGYEVILVNSNPATIMTDRDVADKVYIEPITLEFVSSILRREHPDAIVPTLGGQTG 95

Query: 64  EDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
            +   +     IL+ L I    + + A   + D+   KQ++   G PV  S +V+     
Sbjct: 96  LNMATELATSGILDELGIELLGTKLSAIEKAEDRDLFKQLMDELGQPVPASEVVHTVDEA 155

Query: 120 SQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IE 176
            +  + I  P +++P       G  +   +  +   + +    +   + L+EQ + G  E
Sbjct: 156 VKVGNTIGYPLIVRPAYTLGGTGGGMCCDEAELVRIVGKGLELSPVSECLVEQSIAGYKE 215

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +   +M D + +   + V   + +     ++  +        +    ++ ++  +    +
Sbjct: 216 IEYEMMRDGADNT--MVVCTMENFDPVGVHTGDSIVFAPTQTLTDVEHEMLRDASIEIVR 273

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +G  G        DP S + + +E+N 
Sbjct: 274 VLGIEGGCNVQLALDPNSFQYYVIEVNP 301


>gi|329954774|ref|ZP_08295791.1| phosphoribosylglycinamide formyltransferase 2 [Bacteroides clarus
           YIT 12056]
 gi|328526878|gb|EGF53889.1| phosphoribosylglycinamide formyltransferase 2 [Bacteroides clarus
           YIT 12056]
          Length = 388

 Score = 77.9 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 48/253 (18%), Positives = 86/253 (33%), Gaps = 37/253 (14%)

Query: 33  VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
            S +D D ++  V+   +PD+    +     E         L +       ++ SA +++
Sbjct: 48  FSMLDGD-ALERVVRKHRPDIIVPEIEAIRTE--------RLYDFEKEGIQVVPSARAVN 98

Query: 93  -----KMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVIK 145
                K          G+                +   I  P V+KPL   S  G  ++K
Sbjct: 99  FTMNRKAIRDLAAKELGLKTAKYFYATSLDELKAAAEKIGFPCVVKPLMSSSGKGQSLVK 158

Query: 146 KDQSIPLDLLQSSSWNHGD--QLLIEQYVDGIE----LTCGVMGDASLDVTEIA-VPKSD 198
               +        + + GD  +L+IE+++        LT       +L    I  V K  
Sbjct: 159 SADELEHAWEYGCNGSRGDIKELIIEEFIKFDSEITLLTVTQKNGPTLFCPPIGHVQKGG 218

Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
            Y               PA I     KE Q +A    +A+   G+   +F     +  V+
Sbjct: 219 DY----------RESFQPAHIDPAHLKEAQDMAEKVTRALTGAGLWGVEFFLSHENG-VY 267

Query: 259 WLEINVQP---GM 268
           + E++ +P   GM
Sbjct: 268 FSELSPRPHDTGM 280


>gi|314923021|gb|EFS86852.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium
           acnes HL001PA1]
          Length = 1068

 Score = 77.9 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 43/297 (14%), Positives = 106/297 (35%), Gaps = 36/297 (12%)

Query: 24  SALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLV------ 68
            A++ AG++   +         D   S  L    L  +   NV+      DG++      
Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSISDKLYFEPLTFEDVMNVID-LEQPDGVIVQFGGQ 637

Query: 69  -----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ-- 121
                   L    +P   + +     + D+   + +++  G+P  P              
Sbjct: 638 TAINLAGPLSAAGVPILGTQVADLDRAEDREGFESLLAELGIPQAPGGTARSSEEAFAVA 697

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
             +  P +++P        + ++   + +   +  +   +    +L+++Y++G+E     
Sbjct: 698 EELGYPVLVRPSYVIGGRAMAIVTSAEELKRYMRDAVHASPDKPVLVDRYLNGLECEVDA 757

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGC 240
           + D     T++ +P    +       S +S  V P  ++   +   +  +     + +  
Sbjct: 758 ICDG----TDVLIPGIMEHIERAGVHSGDSMAVYPPQRMSQQVADRIIEVTTKLAKGLKT 813

Query: 241 RGISRSDFLF--DPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +GI    F+   DP + +  V+ +E N +   T     P ++   G S  E+   ++
Sbjct: 814 KGILNIQFVVADDPATGEETVYVIEANPRASRT----VPFLSKVTGVSMAEVATRII 866



 Score = 72.5 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 45/268 (16%), Positives = 100/268 (37%), Gaps = 30/268 (11%)

Query: 25  ALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNVLHGNFG 63
           AL++ G++V  ++        DR V                +L   +PD     L G  G
Sbjct: 36  ALKEEGYEVILVNSNPATIMTDRDVADKVYIEPITLEFVSSILRRERPDAIVPTLGGQTG 95

Query: 64  EDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
            +   +     IL+ L I    + + A   + D+   KQ++   G PV  S +V+     
Sbjct: 96  LNMATELATSGILDELGIELLGTKLSAIEKAEDRDLFKQLMDELGQPVPASEVVHTVDEA 155

Query: 120 SQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IE 176
            +  + I  P +++P       G  +   +  +   + +    +   + L+EQ + G  E
Sbjct: 156 VKVGNTIGYPLIVRPAYTLGGTGGGMCCDEAELVRIVGKGLELSPVSECLVEQSIAGYKE 215

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +   +M D + +   + V   + +     ++  +        +    ++ ++  +    +
Sbjct: 216 IEYEMMRDGADNT--MVVCTMENFDPVGVHTGDSIVFAPTQTLTDVEHEMLRDASIEIVR 273

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +G  G        DP S + + +E+N 
Sbjct: 274 VLGIEGGCNVQLALDPNSFQYYVIEVNP 301


>gi|300812995|ref|ZP_07093381.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus
           delbrueckii subsp. bulgaricus PB2003/044-T3-4]
 gi|300496029|gb|EFK31165.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus
           delbrueckii subsp. bulgaricus PB2003/044-T3-4]
          Length = 1066

 Score = 77.9 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 56/314 (17%), Positives = 109/314 (34%), Gaps = 37/314 (11%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI---------DVD------------RSVGLV 45
           G ++E + +   G     AL + G +V  I         D D              V  +
Sbjct: 21  GQAAEFDYA---GTQACRALREEGIEVVLINSNPATIMTDGDMADHVYIEPLTVPVVKQL 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   KPD     + G    +  +    +  LE   +    +      ++ D++  K ++ 
Sbjct: 78  MEKEKPDALLPTMGGQNALNIAMALADEGFLEKHHVKTIGTDTDTIKMAEDRLEFKNLME 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G PV  S++VN     +     I  P V++P       G  +   +Q +         
Sbjct: 138 RIGEPVAKSVVVNYVEDAIAFAKEIGYPVVVRPAYTLGGTGGGIAHNEQELHEICSNGLR 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   + LIEQ + G  E+   VM D + +   I V   +       ++  +        
Sbjct: 198 LSRVTECLIEQSIAGWKEVEYEVMRDGAGN--CITVCNMENMDPVGVHTGDSIVVAPSQT 255

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278
           +    Y+ ++  A     A+  +G     F  +P S +   +E+N  P ++  S     +
Sbjct: 256 LSDKDYQMLRSSALNIITALNIKGGCNVQFALNPDSFEYCVIEVN--PRVSRSS--ALAS 311

Query: 279 AYAGYSFRELLLWM 292
              GY   +L   +
Sbjct: 312 KATGYPIAKLATKI 325



 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 32/226 (14%), Positives = 86/226 (38%), Gaps = 13/226 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTMDSQHLISPPYV 129
           L  + +P   +   +   + D+ R  +++  C +       V      + + + +  P +
Sbjct: 647 LMKMGVPILGTSADSVDAAEDRERFDEILGKCQIDRPKGQTVFTAEEALKAANELGYPVL 706

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLL-QSSSWNH-GDQLLIEQYVDGIELTCGVMGDASL 187
           ++P       G+ +   D  +   +   +S +N     +LI++Y+ G E     + D   
Sbjct: 707 VRPSYVLGGAGMEIALNDGDLKRFIDHITSQFNIEDHPILIDKYLAGKECEVDAICDDEG 766

Query: 188 DVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
            +    +   +       +S  + +   P KI  ++ + +   +    +A+  +G+    
Sbjct: 767 ILIPGIMEHVERAGV---HSGDSISIYPPQKISQEMKERIVEYSKRLAKALKVKGLMNIQ 823

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           F+      KV+ +E+N +   T     P ++   G    ++   ++
Sbjct: 824 FIV--YENKVYVIEVNPRSSRT----IPYISKVTGIPLVDVATNVI 863


>gi|187479466|ref|YP_787491.1| acetyl-CoA carboxylase biotin carboxylase subunit [Bordetella avium
           197N]
 gi|115424053|emb|CAJ50606.1| biotin carboxylase [Bordetella avium 197N]
          Length = 448

 Score = 77.9 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 83/222 (37%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         L  DK+ +KQ +   GVPV P    
Sbjct: 77  AIHPGYGFLSENADFAERVEKSGFVFIGPRPETIRLMGDKVSAKQAMIEAGVPVVPGSQG 136

Query: 112 LVNRFTMD---SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
            +     +       +  P +IK   GG   G+ V+  + ++   +     ++ +  +  
Sbjct: 137 ALPDDPQEILRIAREVGYPVIIKAAGGGGGRGMRVVYTEAALLNAVTMTRSEAGAAFNNP 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
           ++ +E++++    +   V+ D   +   +            K          PA  IP  
Sbjct: 197 EVYMEKFLENPRHVEIQVLADGGRNAVWLGERDCSMQRRHQK-----VIEEAPAPGIPRR 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + + +      A + +G RG    +FLF   + + +++E+N 
Sbjct: 252 LIERIGDRCADACRKMGYRGAGTFEFLF--ENGEFYFIEMNT 291


>gi|28896204|ref|NP_802554.1| carbamoyl phosphate synthase large subunit [Streptococcus pyogenes
           SSI-1]
 gi|28811455|dbj|BAC64387.1| putative carbamoylphosphate synthetase [Streptococcus pyogenes
           SSI-1]
          Length = 1058

 Score = 77.9 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 37/292 (12%), Positives = 100/292 (34%), Gaps = 32/292 (10%)

Query: 24  SALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH-----G---NFGEDG 66
            A++ AG++   +         D   S  L    L  +   NV+      G    FG   
Sbjct: 579 KAIQKAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIDLEQPKGVIVQFGGQT 638

Query: 67  LV---QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQ 121
            +   QA+ E   +    + +     + D+   ++ +   G+P             +++ 
Sbjct: 639 AINLAQALSE-AGVTILGTQVEDLDRAEDRDLFEKALKELGIPQPQGQTATNEEEALEAA 697

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
             I  P +++P        + +++  + +   +  +   +    +L++ Y+ G E     
Sbjct: 698 KKIGFPVLVRPSYVLGGRAMEIVENKEDLIEYIRTAVKASPEHPILVDSYIFGKECEVDA 757

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241
           + +    +    +   +       +S  +     P ++   I + +          + C 
Sbjct: 758 ISEGKSVLIPGIMEHIERAGV---HSGDSMAVYPPQQLSKQIQETIAEYTKRLAIGLNCI 814

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           G+    F+    + +V+ +E+N +   T     P ++   G    ++   ++
Sbjct: 815 GMMNVQFVI--KNEQVYVIEVNPRASRT----VPFLSKVTGIPMAQIATKLI 860



 Score = 69.4 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 50/296 (16%), Positives = 107/296 (36%), Gaps = 34/296 (11%)

Query: 25  ALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNVLHGNFG 63
           AL++ G+KV  ++        D+ +                ++   +PD     L G  G
Sbjct: 36  ALKEEGYKVILVNSNPATIMTDKEIADKVYIEPLTLEFVNRIIRKERPDAILPTLGGQTG 95

Query: 64  EDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFT 117
            +  +      IL+ LEI    + + A   + D+   KQ++     P+  S +V      
Sbjct: 96  LNMAMALSKAGILDDLEIELLGTKLSAIDQAEDRDLFKQLMQELDQPIPESTIVKTVDEA 155

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IE 176
           +     I  P +++P       G  +   ++ +          +   Q LIE+ + G  E
Sbjct: 156 VTFARDIGYPVIVRPAFTLGGTGGGICSSEEELCEITENGLKLSPVTQCLIERSIAGFKE 215

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +   VM D++ +   + V   + +     ++  +        +     + ++  +    +
Sbjct: 216 IEYEVMRDSADNA--LVVCNMENFDPVGIHTGDSIVFAPTQTLSDIENQMLRDASLKIIR 273

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           A+   G        DP S K + +E+N  P ++  S     +   GY   +L   +
Sbjct: 274 ALKIEGGCNVQLALDPYSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAKI 325


>gi|170035239|ref|XP_001845478.1| methylcrotonoyl-CoA carboxylase alpha chain, mitochondrial [Culex
           quinquefasciatus]
 gi|167877128|gb|EDS40511.1| methylcrotonoyl-CoA carboxylase alpha chain, mitochondrial [Culex
           quinquefasciatus]
          Length = 699

 Score = 77.5 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/222 (15%), Positives = 78/222 (35%), Gaps = 20/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H  +G   E+     + +   + +      A      K  SK ++S  GVP+      
Sbjct: 106 AIHPGYGFLSENVEFAELCQREGVIFIGPPASAIRDMGIKSTSKHIMSDAGVPIINGYHG 165

Query: 113 ---VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS-----SWNHGD 164
               +   +    +I  P +IK ++GG   G+ + + +      L  +      ++    
Sbjct: 166 EDQSDERLIAEAKIIGFPLMIKAVRGGGGKGMRIAETEADFMAALQSARTESEKAFG-DS 224

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            +L+E+YV     +   V  D   +   +           ++          PA  +  +
Sbjct: 225 SMLLERYVRSPRHVEVQVFADHFGNAVYLYE-----RDCSVQRRHQKIIEEAPAPGLSEE 279

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +  ++   A  A +A+   G    +F+ D       ++E+N 
Sbjct: 280 LRVQLGEAAVRAAKAVNYVGAGTVEFILDKEDLSFHFMEMNT 321


>gi|57234039|ref|YP_181915.1| carbamoyl-phosphate synthase, large subunit [Dehalococcoides
           ethenogenes 195]
 gi|57224487|gb|AAW39544.1| carbamoyl-phosphate synthase, large subunit [Dehalococcoides
           ethenogenes 195]
          Length = 1089

 Score = 77.5 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/196 (17%), Positives = 67/196 (34%), Gaps = 11/196 (5%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTMDSQHLISPPYVIKPL 133
             P   S   A  L+ D+ R ++++S  G+P  P   I      +     I  P V++P 
Sbjct: 662 GNPIIGSSAEAIDLAEDRRRFERLLSEMGIPQAPGAGITTLDEALSIAESIGYPVVVRPS 721

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
                  + ++     +   +  +   N G  +LI++Y+ G E+    + D         
Sbjct: 722 YVLGGRAMEIVSDASDLIRYMSAAIELNTGHPILIDKYLVGKEVEVDAIADGETVFIPGV 781

Query: 194 VPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
           +   +           +S  V P   +       +        +A+  RG+    F+   
Sbjct: 782 MEHIERAGVHS----GDSMAVYPTQNLNAHDLATISDYTIRIGKALNVRGLMNIQFVVSK 837

Query: 253 L----SRKVFWLEINV 264
                   V+ LE+N 
Sbjct: 838 DPEGGDNIVYILEVNP 853



 Score = 74.8 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 40/232 (17%), Positives = 83/232 (35%), Gaps = 9/232 (3%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMR 95
            S+  ++   +PD     L G  G +  V      +L    +    + I     + D+  
Sbjct: 79  ESITKIIEKERPDGLLPTLGGQTGLNLAVDLADAGVLAKYNVRSLGTPINTIRTAEDREL 138

Query: 96  SKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153
            K++++  G PV PS  V      +     I  P VI+P       G       + +   
Sbjct: 139 FKELLAKIGEPVPPSETVTTAEDALKVAREIGLPVVIRPAYTLGGTGGGFANNWEEVEEV 198

Query: 154 LLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212
                + +   Q+L+E+ V G  E+   VM D + +   I     + +     ++  +  
Sbjct: 199 AQTGLNASPIHQILVEKSVAGWKEIEYEVMRDGADNCITIC--NMENFDPMGVHTGDSIV 256

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            V    +     + ++  +    +A+G  G        +P   + + +E+N 
Sbjct: 257 VVPVQTLTNKESQMLRTASIKIIRALGIEGGCNVQLSLNPNGNEYYVIEVNP 308


>gi|291570064|dbj|BAI92336.1| carbamoyl-phosphate synthase large subunit [Arthrospira platensis
           NIES-39]
          Length = 1077

 Score = 77.5 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 55/279 (19%), Positives = 102/279 (36%), Gaps = 36/279 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVDRS------------VGLVLAHLKPDLAFN 56
           SG     AL + G+ V  +         D + +            V  V+   +PD    
Sbjct: 29  SGTQACKALREEGYDVVLVNSNPATIMTDPETARRTYIEPLTPEIVEKVIEAERPDALLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  V      +L+   +    + + A   + D++  KQ +   GV  CPS +
Sbjct: 89  TMGGQTALNIAVALSKNGVLDKYGVELIGAKLDAIEKAEDRLLFKQAMEKIGVACCPSGI 148

Query: 113 ---VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
              +N     ++ + + P +I+P       G  +    +      +     +   Q+L+E
Sbjct: 149 ANNLNEARAIAEQIGTYPLIIRPAFTMGGTGGGIAYNQEEYEELAMGGLDASPMSQILVE 208

Query: 170 QYVDG-IELTCGVMGD-ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKE 226
           Q + G  E    VM D A   V   ++   D           +S  V PA+ +    Y+ 
Sbjct: 209 QSLIGWKEYELEVMRDLADNVVIICSIENLDPMGVHT----GDSITVAPAQTLTDKEYQR 264

Query: 227 VQRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           ++  A    + IG   G S   F  +P++  V  +E+N 
Sbjct: 265 LRDAAIKIIREIGVETGGSNIQFSVNPVNGDVIVIEMNP 303



 Score = 55.1 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/212 (11%), Positives = 80/212 (37%), Gaps = 13/212 (6%)

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGSS 138
            +   +   + D+ R ++++    +    + +   +   +     I  P V++P      
Sbjct: 667 GTSPDSIDTAEDRERFEKILRELNIQQAANGMARSYEEALAVAGRIGYPVVVRPSYVLGG 726

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKS 197
             + ++  D+ +   +  +        +L++++++  +E+    + D + +V    + + 
Sbjct: 727 RAMEIVYSDEELERYMTFAVLVEPDHPILVDKFLENAVEVDVDAIADHTGNVVIGGIME- 785

Query: 198 DFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256
             +  +    S +S   +P + +   +   ++R      +A+   G+    F       +
Sbjct: 786 --HIEQAGIHSGDSACSIPTQTLSETVLATIRRQTIQLAKALNVVGLMNIQFAV--QGEQ 841

Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           V+ LE N +   T     P ++   G    ++
Sbjct: 842 VYILEANPRASRT----VPFVSKAIGIPLAKM 869


>gi|284049940|ref|ZP_06380150.1| carbamoyl phosphate synthase large subunit [Arthrospira platensis
           str. Paraca]
          Length = 1077

 Score = 77.5 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 55/279 (19%), Positives = 102/279 (36%), Gaps = 36/279 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVDRS------------VGLVLAHLKPDLAFN 56
           SG     AL + G+ V  +         D + +            V  V+   +PD    
Sbjct: 29  SGTQACKALREEGYDVVLVNSNPATIMTDPETARRTYIEPLTPEIVEKVIEAERPDALLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  V      +L+   +    + + A   + D++  KQ +   GV  CPS +
Sbjct: 89  TMGGQTALNIAVALSKNGVLDKYGVELIGAKLDAIEKAEDRLLFKQAMEKIGVACCPSGI 148

Query: 113 ---VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
              +N     ++ + + P +I+P       G  +    +      +     +   Q+L+E
Sbjct: 149 ANNLNEARAIAEQIGTYPLIIRPAFTMGGTGGGIAYNQEEYEELAMGGLDASPMSQILVE 208

Query: 170 QYVDG-IELTCGVMGD-ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKE 226
           Q + G  E    VM D A   V   ++   D           +S  V PA+ +    Y+ 
Sbjct: 209 QSLIGWKEYELEVMRDLADNVVIICSIENLDPMGVHT----GDSITVAPAQTLTDKEYQR 264

Query: 227 VQRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           ++  A    + IG   G S   F  +P++  V  +E+N 
Sbjct: 265 LRDAAIKIIREIGVETGGSNIQFSVNPVNGDVIVIEMNP 303



 Score = 55.1 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/212 (11%), Positives = 80/212 (37%), Gaps = 13/212 (6%)

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGSS 138
            +   +   + D+ R ++++    +    + +   +   +     I  P V++P      
Sbjct: 667 GTSPDSIDTAEDRERFEKILRELNIQQAANGMARSYEEALAVAGRIGYPVVVRPSYVLGG 726

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKS 197
             + ++  D+ +   +  +        +L++++++  +E+    + D + +V    + + 
Sbjct: 727 RAMEIVYSDEELERYMTFAVLVEPDHPILVDKFLENAVEVDVDAIADHTGNVVIGGIME- 785

Query: 198 DFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256
             +  +    S +S   +P + +   +   ++R      +A+   G+    F       +
Sbjct: 786 --HIEQAGIHSGDSACSIPTQTLSETVLATIRRQTIQLAKALNVVGLMNIQFAV--QGEQ 841

Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           V+ LE N +   T     P ++   G    ++
Sbjct: 842 VYILEANPRASRT----VPFVSKAIGIPLAKM 869


>gi|314966795|gb|EFT10894.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium
           acnes HL082PA2]
 gi|314981133|gb|EFT25227.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium
           acnes HL110PA3]
 gi|315093286|gb|EFT65262.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium
           acnes HL060PA1]
 gi|327327622|gb|EGE69398.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium
           acnes HL103PA1]
          Length = 1068

 Score = 77.5 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 43/297 (14%), Positives = 106/297 (35%), Gaps = 36/297 (12%)

Query: 24  SALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLV------ 68
            A++ AG++   +         D   S  L    L  +   NV+      DG++      
Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSISDKLYFEPLTFEDVMNVID-LEQPDGVIVQFGGQ 637

Query: 69  -----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ-- 121
                   L    +P   + +     + D+   + +++  G+P  P              
Sbjct: 638 TAINLAGPLSAAGVPILGTQVADLDRAEDREGFESLLAELGIPQAPGGTARSSEEAFAVA 697

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
             +  P +++P        + ++   + +   +  +   +    +L+++Y++G+E     
Sbjct: 698 EELGYPVLVRPSYVIGGRAMAIVTSAEELKRYMRDAVHASPDKPVLVDRYLNGLECEVDA 757

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGC 240
           + D     T++ +P    +       S +S  V P  ++   +   +  +     + +  
Sbjct: 758 ICDG----TDVLIPGIMEHIERAGVHSGDSMAVYPPQRMSQQVADRIIEVTTKLAKGLKT 813

Query: 241 RGISRSDFLF--DPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +GI    F+   DP + +  V+ +E N +   T     P ++   G S  E+   ++
Sbjct: 814 KGILNIQFVVADDPATGEETVYVIEANPRASRT----VPFLSKVTGVSMAEVATRII 866



 Score = 72.5 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 45/268 (16%), Positives = 100/268 (37%), Gaps = 30/268 (11%)

Query: 25  ALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNVLHGNFG 63
           AL++ G++V  ++        DR V                +L   +PD     L G  G
Sbjct: 36  ALKEEGYEVILVNSNPATIMTDRDVADKVYIEPITLEFVSSILRRERPDAIVPTLGGQTG 95

Query: 64  EDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
            +   +     IL+ L I    + + A   + D+   KQ++   G PV  S +V+     
Sbjct: 96  LNMATELATSGILDELGIELLGTKLSAIEKAEDRDLFKQLMDELGQPVPASEVVHTVDEA 155

Query: 120 SQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IE 176
            +  + I  P +++P       G  +   +  +   + +    +   + L+EQ + G  E
Sbjct: 156 VKVGNTIGYPLIVRPAYTLGGTGGGMCCDEAELVRIVGKGLELSPVSECLVEQSIAGYKE 215

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +   +M D + +   + V   + +     ++  +        +    ++ ++  +    +
Sbjct: 216 IEYEMMRDGADNT--MVVCTMENFDPVGVHTGDSIVFAPTQTLTDVEHEMLRDASIEIVR 273

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +G  G        DP S + + +E+N 
Sbjct: 274 VLGIEGGCNVQLALDPNSFQYYVIEVNP 301


>gi|238020659|ref|ZP_04601085.1| hypothetical protein GCWU000324_00548 [Kingella oralis ATCC 51147]
 gi|237867639|gb|EEP68645.1| hypothetical protein GCWU000324_00548 [Kingella oralis ATCC 51147]
          Length = 455

 Score = 77.5 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 80/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+      +E     +         L  DK+ +K+ +   GVP  P    
Sbjct: 77  AIHPGYGFLAENANFAEQVENSGFVFIGPRADTIRLMGDKVSAKKAMIEAGVPCVPGSDG 136

Query: 111 -ILVNRFT-MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
            +  +    + +   +  P +IK   GG   G+ V++K + +   +     ++ +     
Sbjct: 137 ALPGDPSEILKTADKVGFPVIIKASGGGGGRGMRVVEKKEDLLKAVEMTRAEAEAAFGNP 196

Query: 165 QLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+++     +   V+ D   +   +            K          PA  I   
Sbjct: 197 MVYMERFLQRPRHVEIQVLADEHGNAIYLGERDCSMQRRHQK-----IIEEAPAPFITPA 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             K++      A + IG RG    +FL+     + F++E+N 
Sbjct: 252 QRKKIGEACVAACKRIGYRGAGTFEFLY--EDGEFFFIEMNT 291


>gi|148658146|ref|YP_001278351.1| carbamoyl-phosphate synthase large subunit [Roseiflexus sp. RS-1]
 gi|148570256|gb|ABQ92401.1| carbamoyl-phosphate synthase large subunit [Roseiflexus sp. RS-1]
          Length = 1113

 Score = 77.5 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 52/278 (18%), Positives = 100/278 (35%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG      L   GF+V  ++ + +                     V  ++   KPD    
Sbjct: 29  SGVQACKVLRREGFRVVLVNSNPATIMTDPQMADATYIEPLTPEIVEKIIEREKPDALLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G  G +  ++     +L+   +    +   A AL+ D+   K+ + + G+ V     
Sbjct: 89  TVGGQTGLNLAMKLAESGVLDRYGVQLIGASPRAIALAEDRELFKRAMINAGLRVPLGET 148

Query: 113 VNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           V+     +D    I  P +++P       G  V   +  +     +    +   Q+LIEQ
Sbjct: 149 VSTVDQALDVAARIGYPVLVRPSFTLGGSGGGVAYNEAQLREIADRGLRASPVTQVLIEQ 208

Query: 171 YVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            V G  E    VM D + + V   ++   D           +S  + PA  +    Y+ +
Sbjct: 209 SVLGWKEYELEVMRDRADNFVVVCSIENLDPMGVHT----GDSITIAPAMTLTDREYQRL 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           + +A +  + +G   G S   F  +P       +E+N 
Sbjct: 265 REMAKIIIRTVGVETGGSNIQFAVNPRDGTPLVIEMNP 302



 Score = 65.1 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 51/292 (17%), Positives = 100/292 (34%), Gaps = 42/292 (14%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGL-------- 67
           AL D G++   I         D D S  L    L  +   NV     G  G         
Sbjct: 598 ALRDLGYETIMINCNPETVSTDYDTSDRLYFEPLTLEDVLNVWENESGRRGDGEETPVPM 657

Query: 68  -----------VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN-- 114
                      +   L    +P   +   +  L+ D+ R  +++    +    S +    
Sbjct: 658 LVQFGGQTPLNLAKGLTAAGVPIWGTSQDSIDLAEDRGRFSELLRRLDIMQPESGMAADL 717

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-D 173
           +        I  P +++P        + +   D+ +   + +++  + G  +LI++Y+ D
Sbjct: 718 QAARKVAQRIGYPVLVRPSYVLGGRAMAIAYDDEGLAQYIQEATRISAGQPVLIDRYLED 777

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAF 232
             EL    +GD    V    +   +    E    S +S  V+P  K+       ++    
Sbjct: 778 AFELDVDAVGDGERVVIGGIMEHVE----EAGVHSGDSAMVMPPYKVSAYHLAIIRDETI 833

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
              +A+  +G+    F       +V+ LE+N +   T     P +A  +G  
Sbjct: 834 RIGEALRVKGLMNIQFAI--KDDEVYVLEVNPRASRT----VPFVAKASGVP 879


>gi|268317551|ref|YP_003291270.1| carbamoyl-phosphate synthase, large subunit [Rhodothermus marinus
           DSM 4252]
 gi|262335085|gb|ACY48882.1| carbamoyl-phosphate synthase, large subunit [Rhodothermus marinus
           DSM 4252]
          Length = 946

 Score = 77.5 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 58/307 (18%), Positives = 108/307 (35%), Gaps = 40/307 (13%)

Query: 18  SGKACASALEDAGFKVS------------QIDVDR---------SVGLVLAHLKPDLAFN 56
           SG   A AL   G++V              I  DR         S+  ++   +PD    
Sbjct: 29  SGSQAARALRKEGYEVILVNSNPATIMTDPITADRVYLQELTPESIRRIVEKERPDAVLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +   Q       E + +      I A  ++ D+ + + ++   G+    S  
Sbjct: 89  TMGGQTALNLAAQLHEEGFWEAMGVEIIGVDIEAIQITEDRQKFRDLMEQIGIDQARSRT 148

Query: 113 VN---RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
                      Q L   P VI+P       G  ++   +     + +    +   Q+LIE
Sbjct: 149 ARSLLEAKEILQELGGLPVVIRPSFTLGGTGGGIVWTMEEFDRKVTRGLELSPVHQVLIE 208

Query: 170 QYVDG-IELTCGVMGDASLDV-TEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKE 226
           + V G  E    ++ DA+ +V     +   D           +S  V PA+ +    Y+ 
Sbjct: 209 ESVYGWKEYELELLRDANDNVIIVCPIENLDPMGVHT----GDSITVAPAQTLTDKQYQR 264

Query: 227 VQRLAFLAHQAIG-CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285
           ++  A    ++IG   G     F  +P + ++  +EIN  P M+  S     +   GY  
Sbjct: 265 MRDAAIKMMRSIGKFAGGCNVQFAVEPHTGRMIAVEIN--PRMSRSS--ALASKATGYPI 320

Query: 286 RELLLWM 292
            ++   +
Sbjct: 321 AKVAARL 327



 Score = 56.3 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 42/281 (14%), Positives = 98/281 (34%), Gaps = 43/281 (15%)

Query: 20  KACASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVL-----HGNFGED 65
               +A ++ G++   I         D D +  L    +  +   +++     HG     
Sbjct: 582 HGVLAA-KEMGYEAIMINCNPETVSTDFDVADKLYFEPVFWERVLDIIEHENRHGKL--K 638

Query: 66  GLV-----QAILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
           G++     Q  L+L        IP   +      L+ ++ +   ++    +P  P     
Sbjct: 639 GVIVQLGGQTALKLARKLHEHGIPILGTSFPMMDLAEERSKFSALLRELEIPYPPYGAAR 698

Query: 115 --RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                ++    I  P +I+P       G+ +    + +   +         +++L++ ++
Sbjct: 699 TVAEAVEVAERIGYPILIRPSYVLGGQGMRIAINKEEVERYVRNILKLLPDNEILLDLFL 758

Query: 173 D-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRL 230
           + GIE+      DA+ D  E+ +     +       S +ST VLP   +  ++   ++R 
Sbjct: 759 ENGIEVDV----DAACDGEEVWIAGIMQHIEPAGVHSGDSTAVLPPFSLSEEVLNTIRRY 814

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN-----VQP 266
                + +   G+     +       V+ +E N       P
Sbjct: 815 TEDIARRLQVVGLINVQMVV--KDNVVYVIEANPRASRTMP 853


>gi|254488270|ref|ZP_05101475.1| RimK-like ATP-grasp domain family protein [Roseobacter sp. GAI101]
 gi|214045139|gb|EEB85777.1| RimK-like ATP-grasp domain family protein [Roseobacter sp. GAI101]
          Length = 681

 Score = 77.5 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 76/221 (34%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      L    + +    + A     DK+ SK++    GV   P  + 
Sbjct: 77  AVHPGYGFLSENSKFAEALAAEGVAFVGPPVGAIEKMGDKITSKKIAQEAGVSTVPGYMG 136

Query: 114 NRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGD 164
                D      + +  P ++K   GG   G+ +   D+             ++S+   D
Sbjct: 137 LIADADEAVKISNDVGYPVMLKASAGGGGKGMRIAWNDEEAREGFQSSKNEAANSFG-DD 195

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           ++ IE++V     +   V+ D+  +   +   +        K             +    
Sbjct: 196 RIFIEKFVTQPRHIEIQVLCDSHGNGIYLGERECSIQRRNQK----VVEEAPSPFLDEAT 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            K +   A    QA+G       +F+ D   R  ++LE+N 
Sbjct: 252 RKAMGEQAVALAQAVGYTSAGTVEFIVDG-DRNFYFLEMNT 291


>gi|58580179|ref|YP_199195.1| acetyl-CoA carboxylase biotin carboxylase subunit [Xanthomonas
           oryzae pv. oryzae KACC10331]
 gi|84622177|ref|YP_449549.1| acetyl-CoA carboxylase biotin carboxylase subunit [Xanthomonas
           oryzae pv. oryzae MAFF 311018]
 gi|166713762|ref|ZP_02244969.1| acetyl-CoA carboxylase biotin carboxylase subunit [Xanthomonas
           oryzae pv. oryzicola BLS256]
 gi|188578814|ref|YP_001915743.1| acetyl-CoA carboxylase biotin carboxylase subunit [Xanthomonas
           oryzae pv. oryzae PXO99A]
 gi|289663897|ref|ZP_06485478.1| acetyl-CoA carboxylase biotin carboxylase subunit [Xanthomonas
           campestris pv. vasculorum NCPPB702]
 gi|289669485|ref|ZP_06490560.1| acetyl-CoA carboxylase biotin carboxylase subunit [Xanthomonas
           campestris pv. musacearum NCPPB4381]
 gi|58424773|gb|AAW73810.1| biotin carboxylase subunit of acetyl CoA carboxylase [Xanthomonas
           oryzae pv. oryzae KACC10331]
 gi|84366117|dbj|BAE67275.1| biotin carboxylase subunit of acetyl CoA carboxylase [Xanthomonas
           oryzae pv. oryzae MAFF 311018]
 gi|188523266|gb|ACD61211.1| acetyl-CoA carboxylase, biotin carboxylase [Xanthomonas oryzae pv.
           oryzae PXO99A]
          Length = 455

 Score = 77.5 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 40/225 (17%), Positives = 82/225 (36%), Gaps = 27/225 (12%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+      +E     +         L  DK+ + + + + GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAERVEQSGFIFIGPKADTIRLMGDKVEAIRAMKAAGVPCVPGSGG 136

Query: 111 -----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWN 161
                I+ N         I  P +IK   GG   G+ V+  + ++   +     ++ +  
Sbjct: 137 PLGEDIVAN---TKIAREIGYPVIIKAAGGGGGRGMRVVHSEAALKAAIETTKSEAKAAF 193

Query: 162 HGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-I 219
             DQ+ +E++++    +   V+ D       +            K          PA  I
Sbjct: 194 SNDQVYMEKFLENPRHVEIQVLADGQGGAIHLGERDCSMQRRHQK-----VVEEAPAPGI 248

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             ++  ++ ++   A   IG RG    +FLF   +   +++E+N 
Sbjct: 249 TEELRNQIGKVCVDACIRIGYRGAGTFEFLF--ENGSFYFIEMNT 291


>gi|114561734|ref|YP_749247.1| carbamoyl-phosphate synthase L chain, ATP-binding [Shewanella
            frigidimarina NCIMB 400]
 gi|114333027|gb|ABI70409.1| Carbamoyl-phosphate synthase L chain, ATP-binding [Shewanella
            frigidimarina NCIMB 400]
          Length = 1517

 Score = 77.5 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 82/221 (37%), Gaps = 18/221 (8%)

Query: 57   VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
             LH   G   E     A+     + +    + +     +K  +        VPV P    
Sbjct: 1018 ALHPGIGFLSESPQFAALCVNNGVNFVGPSVHSMTTMGNKSNAIHTSQKQNVPVVPGSHG 1077

Query: 111  -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI-----PLDLLQSSSWNHGD 164
             +      ++    I  P ++K ++GG   GI V+K+ + +           ++++ +GD
Sbjct: 1078 ILTNAEQAVNVASEIGYPVLLKAVQGGGGKGIQVVKRPEDMIGFFQKTATEAAAAFGNGD 1137

Query: 165  QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
              L E+YV     +   ++ D   +   + +          K    + + +    +P ++
Sbjct: 1138 LYL-EKYVTSLRHIEVQLLRDKFGNTKVLGIRDCSVQRNNQKVIEESGSTM----LPEEL 1192

Query: 224  YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             + V         A    G    +F+++  + +V+++E+N 
Sbjct: 1193 KQRVMEYTRALGDATDYMGAGTVEFIYNLDANEVYFMEMNT 1233


>gi|282854052|ref|ZP_06263389.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium
           acnes J139]
 gi|282583505|gb|EFB88885.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium
           acnes J139]
          Length = 1068

 Score = 77.5 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 43/297 (14%), Positives = 106/297 (35%), Gaps = 36/297 (12%)

Query: 24  SALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLV------ 68
            A++ AG++   +         D   S  L    L  +   NV+      DG++      
Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSISDKLYFEPLTFEDVMNVID-LEQPDGVIVQFGGQ 637

Query: 69  -----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ-- 121
                   L    +P   + +     + D+   + +++  G+P  P              
Sbjct: 638 TAINLAGPLSAAGVPILGTQVADLDRAEDREGFESLLAELGIPQAPGGTARSSEEAFAVA 697

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
             +  P +++P        + ++   + +   +  +   +    +L+++Y++G+E     
Sbjct: 698 EELGYPVLVRPSYVIGGRAMAIVTSAEELKRYMRDAVHASPDKPVLVDRYLNGLECEVDA 757

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGC 240
           + D     T++ +P    +       S +S  V P  ++   +   +  +     + +  
Sbjct: 758 ICDG----TDVLIPGIMEHIERAGVHSGDSMAVYPPQRMSQQVADRIIEVTTKLAKGLKT 813

Query: 241 RGISRSDFLF--DPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +GI    F+   DP + +  V+ +E N +   T     P ++   G S  E+   ++
Sbjct: 814 KGILNIQFVVADDPATGEETVYVIEANPRASRT----VPFLSKVTGVSMAEVATRII 866



 Score = 72.8 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 45/268 (16%), Positives = 100/268 (37%), Gaps = 30/268 (11%)

Query: 25  ALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNVLHGNFG 63
           AL++ G++V  ++        DR V                +L   +PD     L G  G
Sbjct: 36  ALKEEGYEVILVNSNPATIMTDRDVADKVYIEPITLEFVSSILRRERPDAIVPTLGGQTG 95

Query: 64  EDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
            +   +     IL+ L I    + + A   + D+   KQ++   G PV  S +V+     
Sbjct: 96  LNMATELATSGILDELGIELLGTKLSAIEKAEDRDLFKQLMDELGQPVPASEVVHTVDEA 155

Query: 120 SQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IE 176
            +  + I  P +++P       G  +   +  +   + +    +   + L+EQ + G  E
Sbjct: 156 VKVGNTIGYPLIVRPAYTLGGTGGGMCCDEAELVRIVGKGLELSPVSECLVEQSIAGYKE 215

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +   +M D + +   + V   + +     ++  +        +    ++ ++  +    +
Sbjct: 216 IEYEMMRDGADNT--MVVCTMENFDPVGVHTGDSIVFAPTQTLTDVEHEMLRDASIEIAR 273

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +G  G        DP S + + +E+N 
Sbjct: 274 VLGIEGGCNVQLALDPNSFQYYVIEVNP 301


>gi|327401416|ref|YP_004342255.1| carbamoyl-phosphate synthase large subunit [Archaeoglobus veneficus
           SNP6]
 gi|327316924|gb|AEA47540.1| carbamoyl-phosphate synthase, large subunit [Archaeoglobus
           veneficus SNP6]
          Length = 1076

 Score = 77.5 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 56/289 (19%), Positives = 106/289 (36%), Gaps = 38/289 (13%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQID------------VDRS---------VGLV 45
           G ++E + S   G     AL + G++V  ++             DR+         V  +
Sbjct: 21  GQAAEFDYS---GSQACKALREEGYEVVLVNSNPATIMTDPEMADRTYIEPLTADVVARI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +    PD     L G    +  VQ     +L+   +    + + A   + D+   K+ + 
Sbjct: 78  IERETPDALLPTLGGQTALNIAVQLGEMGVLDKYGVELIGAKLDAIKKAEDRELFKECMH 137

Query: 102 SCGVPVCPSILVNR--FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G+ V  S + N     +     I  P V++P       G  +    + +         
Sbjct: 138 RIGLEVPRSDIANDISEALSIAEEIGYPVVVRPAFTLGGTGGGIAYNREELKEIAAHGLE 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPA 217
            +  +Q+LIE+ V G  E    VM D + +V  I   ++    ++       +S  V PA
Sbjct: 198 MSMINQVLIEEGVIGWKEFELEVMRDLADNVVIICSIEN----FDPMGVHTGDSITVAPA 253

Query: 218 K-IPLDIYKEVQRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           + +    Y+ ++  A    + IG   G S   F   P + +   +E+N 
Sbjct: 254 QTLTDWEYQRLRDAAIDIIREIGVETGGSNIQFAVHPTTERFVAIEMNP 302



 Score = 63.6 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 41/290 (14%), Positives = 101/290 (34%), Gaps = 33/290 (11%)

Query: 26  LEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ------- 69
           L++ G++   +         D D S  L    +  +   N+      E  +VQ       
Sbjct: 590 LKEEGYETIMVNNNPETVSTDYDTSDRLYFEPITHEDVMNIYENEKPEGVIVQFGGQTPL 649

Query: 70  ---AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLI 124
                LE        + + +  ++ D+ R  ++ +  G+P   + + +      +    I
Sbjct: 650 NIAKQLESSGAKILGTSVDSIDIAEDRERFAELCNRLGIPQPENGIAHSIEEAKEIAARI 709

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMG 183
             P +++P        + ++  ++++   + ++   +    +LI++++ D IE+    + 
Sbjct: 710 GYPVLVRPSYVLGGRAMEIVYDEETLERYISEALEVSPEKPILIDKFLEDAIEVEVDALC 769

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
           D    V    +   +    E    S +S  V  P  +  DI   +         A+    
Sbjct: 770 DGEEVVIGGIMEHIE----EAGVHSGDSACVLPPVSLSQDIIDRIVDYTRKM--ALELNV 823

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +   +  +      V+ LE N +   T     P ++   G    ++   +
Sbjct: 824 VGLINIQYAVKDNIVYVLEANPRASRT----VPFVSKATGIPLAKIAAKL 869


>gi|302867965|ref|YP_003836602.1| carbamoyl-phosphate synthase subunit L [Micromonospora aurantiaca
           ATCC 27029]
 gi|302570824|gb|ADL47026.1| Carbamoyl-phosphate synthase L chain ATP-binding [Micromonospora
           aurantiaca ATCC 27029]
          Length = 504

 Score = 77.5 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 79/221 (35%), Gaps = 21/221 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   ED     I     + +        A   DK  ++ ++S+ G+P+ P  + 
Sbjct: 77  AVHPGYGFLSEDADFAEICAENGLVFVGPPPQVMAALADKSTARALMSAAGLPLPPGSVR 136

Query: 114 N----RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS-----SWNHGD 164
                    +    +  P ++K   GG   G+ V++    +P    ++      ++   D
Sbjct: 137 TLPTVGEAQEVAAEVGYPVIVKAAAGGGGRGMTVVRSAAELPRAYARTRAAAQVAFG-DD 195

Query: 165 QLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
           ++ +E+Y+ D   +   V+ D   +               ++          PA  +   
Sbjct: 196 RVYVERYLADARHVEVQVLCDGHGNGV-----HLGTRDCSVQRRHQKLIEEAPAPALRQA 250

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
               V  +A     ++G  G    +FL D   R   +LEIN
Sbjct: 251 TLDTVAEVALRGALSVGFTGAGTVEFLVDEAER-CHFLEIN 290


>gi|257066756|ref|YP_003153012.1| phosphoribosylglycinamide synthetase [Anaerococcus prevotii DSM
           20548]
 gi|256798636|gb|ACV29291.1| phosphoribosylglycinamide synthetase [Anaerococcus prevotii DSM
           20548]
          Length = 400

 Score = 77.5 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 31/187 (16%), Positives = 70/187 (37%), Gaps = 13/187 (6%)

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYVIKPLKGGS 137
                 A+ +  DK + K+      V      +V       ++   +  P ++K      
Sbjct: 94  VGLNEEAAIMCGDKYKMKEAFKKYNVNTARHFVVRNENELKNALENLKLPVIVKATDLQG 153

Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDVTEIAVP 195
           S GI + KK++       ++ +    D  ++E++++G E      V  +  L V  +   
Sbjct: 154 SKGIYIAKKEEEAIDGFNETMNLTKRDYCIVEEFIEGYEFGAQAFVYKNDVLFV--MPHG 211

Query: 196 KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS-RSDFLFDPLS 254
              + S+      +   H +P  +  DI ++ +     A +A+G    +   D +     
Sbjct: 212 DETYMSHTA----VPVGHYVPLDVKDDIIEKTKTEVKKAIKALGLNNCAVNVDMIL--KD 265

Query: 255 RKVFWLE 261
            +V+ +E
Sbjct: 266 NEVYIIE 272


>gi|226305320|ref|YP_002765278.1| acyl-CoA carboxylase alpha chain [Rhodococcus erythropolis PR4]
 gi|226184435|dbj|BAH32539.1| probable acyl-CoA carboxylase alpha chain [Rhodococcus erythropolis
           PR4]
          Length = 679

 Score = 77.5 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/197 (17%), Positives = 73/197 (37%), Gaps = 16/197 (8%)

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSI----LVNRFTMDSQHLISPPYVIKPLK 134
           +      A  +  DK+ +K  V++  VPV P I    L +   + +   I  P ++KP  
Sbjct: 107 FLGPSERAIEVMGDKITAKNAVAAFDVPVVPGIARPNLTDEELIAAAEDIGYPVLVKPSA 166

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQLLIEQYV-DGIELTCGVMGDASLDV 189
           GG   G+ +++   ++   L  +          D L +E++V     +   V+ D   +V
Sbjct: 167 GGGGKGMRLVEDPANLAEALRSARREAASSFGDDTLFLERFVLRPRHIEVQVLADQHGNV 226

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY-KEVQRLAFLAHQAIGCRGISRSDF 248
             +   +        K          P+ +   +    +   A    +++   G    +F
Sbjct: 227 VHLGERECSLQRRHQK-----VIEEAPSPLLDQVTRDRIGAAACNTARSVDYTGAGTVEF 281

Query: 249 LFDPLS-RKVFWLEINV 264
           +       + F++E+N 
Sbjct: 282 IVSADKPDEFFFMEMNT 298


>gi|254419867|ref|ZP_05033591.1| RimK-like ATP-grasp domain family [Brevundimonas sp. BAL3]
 gi|196186044|gb|EDX81020.1| RimK-like ATP-grasp domain family [Brevundimonas sp. BAL3]
          Length = 660

 Score = 77.5 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 48/265 (18%), Positives = 87/265 (32%), Gaps = 42/265 (15%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H  FG   E+ +    LE   I +      A     DK+ SK+  +  GV   P  + 
Sbjct: 77  AVHPGFGFLSENPVFARRLEAEGIAFIGPNPHAIEAMGDKITSKKFAAQAGVSTVPGYMG 136

Query: 113 ---VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
               +   +   + I  P +IK   GG   GI V   D  +        +        D+
Sbjct: 137 LIESDEHALRIANEIGYPVMIKASAGGGGKGIRVAHSDADMAEGFSAVKAEARTAFGDDR 196

Query: 166 LLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK---IPL 221
           + +E++ +D   +   V+GD    +  +       +  E      N   +  A    +  
Sbjct: 197 VFLEKFIIDPRHIEIQVLGDKHGTIVSL-------FDRECSIQRRNQKVIEEAPSPLLDD 249

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY- 280
              K +   A    +A+        +F      R  F+LE+N +              + 
Sbjct: 250 ATRKAMSDQAVALARAVNYDSAGTVEF-VAGQDRSFFFLEMNTR----------LQVEHP 298

Query: 281 -----AGYSFRELLLWMVEDASCLR 300
                 G    +L+  M+  A+  R
Sbjct: 299 VTELITGV---DLVEQMIRSAAGER 320


>gi|220918761|ref|YP_002494065.1| carbamoyl-phosphate synthase, large subunit [Anaeromyxobacter
           dehalogenans 2CP-1]
 gi|219956615|gb|ACL66999.1| carbamoyl-phosphate synthase, large subunit [Anaeromyxobacter
           dehalogenans 2CP-1]
          Length = 1067

 Score = 77.5 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 54/325 (16%), Positives = 102/325 (31%), Gaps = 73/325 (22%)

Query: 18  SGKACASALEDAGFK----------------------VSQIDVDRSVGLVLAHLKPDLAF 55
           SG     AL   G++                      V  +DV  ++  ++   +PD   
Sbjct: 29  SGTQACKALRKLGYRIVLVNSNPATIMTDPGMADATYVEPLDV-ETLTRIIEKERPDALL 87

Query: 56  NVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
             L G  G +   +     +L+   +      + A     D+   K+ ++  G+    S 
Sbjct: 88  PNLGGQTGLNLSSELARKGVLDRYGVRVIGVNLEAIRRGEDRETFKETMTRLGIETARSE 147

Query: 112 LVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
           +       M +   +  P V++P       G       + +     +    +   Q+L+E
Sbjct: 148 IATTLDQAMAAGQRLGFPLVVRPAYTMGGTGGGFAYNVEELEEIAARGLLASPVSQVLVE 207

Query: 170 QYV--------------DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215
           + V               G ++T   + +    V  + V   D Y      +        
Sbjct: 208 ESVLGWEELELEVVRDAKGRKITVCFIEN----VDAMGVHTGDSYCTAPMLT-------- 255

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI-- 273
              I  ++   +Q  A+    AI   G +   F  DP + +V  +EIN +   T  S   
Sbjct: 256 ---ISPELQARLQDQAYRIVDAIEVIGGTNVQFAHDPRTGRVIVIEINPR---TSRSSAL 309

Query: 274 ------FPEM----AAYAGYSFREL 288
                 FP         AG +  E+
Sbjct: 310 ASKATGFPIALVSSMLAAGLTLDEI 334



 Score = 62.8 bits (152), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 35/241 (14%), Positives = 82/241 (34%), Gaps = 13/241 (5%)

Query: 27  EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           +   F+   ++    V  +    +PD       G    D   Q  LE   +    +    
Sbjct: 607 DRLYFEPVTVE---DVLSIYRKERPDGVMVQFGGQTPLDIARQ--LEEAGVRILGTSPET 661

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVI 144
             L+ D+ R   VV   G+P   S L       +     +  P +++P       G+ V+
Sbjct: 662 IDLAEDRERFSAVVRKLGIPQPESGLARDQDEALALARRMGYPLIVRPSYVLGGRGMEVV 721

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYE 203
             ++++   + ++   +    L ++++ VD +E     + D +       +   +     
Sbjct: 722 HDEETLREYVRKAVDVSPERPLYVDRFLVDAVETEADAICDGTDAFVPAVMEHIELAGV- 780

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
             +S  ++  + P  +  +    ++        A+    I   +  +      V+ LE N
Sbjct: 781 --HSGDSACVIPPVNVAPEHLATIEDYTRRL--ALELGVIGLINVQYAIAGGTVYVLEAN 836

Query: 264 V 264
            
Sbjct: 837 P 837


>gi|312438509|gb|ADQ77580.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus TCH60]
          Length = 1073

 Score = 77.5 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 33/221 (14%), Positives = 74/221 (33%), Gaps = 20/221 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+           I +    +    +  DK++++       +PV P    
Sbjct: 3   AIHPGYGFLSENEQFARRCAEEGIKFIGPHLEHLDMFGDKVKARTTAIKADLPVIPGTDG 62

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
            I       +       P +IK   GG   G+ +++++  +     ++ S         +
Sbjct: 63  PIKSYELAKEFAEEAGFPLMIKATSGGGGKGMRIVREESELEDAFHRAKSEAEKSFGNSE 122

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDI 223
           + IE+Y+D    +   V+GD   ++              ++        V P   +   +
Sbjct: 123 VYIERYIDNPKHIEVQVIGDEHGNIV-----HLFERDCSVQRRHQKVVEVAPSVGLSSTL 177

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +   A      I        +FL      + F++E+N 
Sbjct: 178 RQRICDAAIQLMINIKYVNAGTVEFLV--SGDEFFFIEVNP 216


>gi|189219943|ref|YP_001940583.1| carbamoylphosphate synthase large subunit [Methylacidiphilum
           infernorum V4]
 gi|189186801|gb|ACD83986.1| Carbamoylphosphate synthase large subunit [Methylacidiphilum
           infernorum V4]
          Length = 1098

 Score = 77.5 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 57/290 (19%), Positives = 108/290 (37%), Gaps = 39/290 (13%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI---------DVDRS------------VGLV 45
           G ++E + S   G     AL++ G++V  I         D + S            +  +
Sbjct: 35  GQAAEFDYS---GVQACKALKEDGYRVILINSNPATIMTDPEFSDKTYIEPITADILEKI 91

Query: 46  LAHLKPDLAFNVLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   KPD     L G    +  V    + IL+ L I    + I A   + D+   K+ + 
Sbjct: 92  IKEEKPDALLPTLGGQTALNMGVELAQRGILDALGIEMLGAKIEAIKKAEDRQLFKEEMI 151

Query: 102 SCGVPVCPSILVNRFTMDSQ---HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS 158
             G+ +  S +        +    +   P +I+P       G  +    +     +++  
Sbjct: 152 KVGLDIPRSGIARNMEEAREVAAQINQFPLIIRPAFTLGGQGGSIAYNREEFEAGVIRGL 211

Query: 159 SWNHGDQLLIEQYVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLP 216
             +   ++LIE+ + G  E    VM D     V   ++   D           +S  V P
Sbjct: 212 GVSPIGEILIEEGLLGWKEFEMEVMRDRKDSCVVICSIENMDPMGVHT----GDSITVAP 267

Query: 217 AK-IPLDIYKEVQRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           A+ +  + Y+ ++  AF   + IG   G S   F  DP + ++  +E+N 
Sbjct: 268 AQTLTDEEYQRMRDWAFTVIRQIGVETGGSNIQFAVDPKTGRMVVIEMNP 317



 Score = 56.3 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 31/225 (13%), Positives = 88/225 (39%), Gaps = 12/225 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           L+   +    + + +   + D+    Q+VS  G+    S+++   + ++ +   I  P +
Sbjct: 666 LKKAGVRILGTSVESIETAEDRRLFSQLVSKLGLRQPQSLIITGVQESLLAAKKIGFPLL 725

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  +  +   + ++        +L++ ++ D IE+    + D    
Sbjct: 726 LRPSYVLGGRAMHIVYTESDLVRFVEEAIEAAPEKPILVDHFLEDAIEVDIDCVSDGEDI 785

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                +   +       +S  ++  + P  +  +I +E++R  FL  + +   G+    F
Sbjct: 786 FIGAILEHIELAGV---HSGDSACVLPPFSLSENIKEEIRRTVFLLARELNVVGLMNVQF 842

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
                   ++ LE+N +   T     P ++   G    +L   ++
Sbjct: 843 AVQK--NNLYVLEVNPRASRT----VPFISKSIGVPLAKLAAQVI 881


>gi|145223140|ref|YP_001133818.1| carbamoyl-phosphate synthase L chain, ATP-binding [Mycobacterium
           gilvum PYR-GCK]
 gi|145215626|gb|ABP45030.1| Carbamoyl-phosphate synthase L chain, ATP-binding protein
           [Mycobacterium gilvum PYR-GCK]
          Length = 660

 Score = 77.5 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 76/221 (34%), Gaps = 17/221 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      L    + +    + A     DK+ +K  VS  GVPV P I  
Sbjct: 77  AVHPGYGFLSENSQFADALRSAGVVFIGPPVAAIQTMGDKISAKAAVSEFGVPVVPGISR 136

Query: 114 NRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
              T D        +  P ++KP  GG   G+ V+     +   L  +          D 
Sbjct: 137 PGLTDDDLIAGAPDVGFPVLVKPSAGGGGKGMRVVHDAADLAAALASARREAASAFGDDT 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           L +E++V +   +   V+ D+  +V  +   +        K             +     
Sbjct: 197 LFLERFVLNPRHIEVQVLADSHGNVVHLGERECSLQRRHQK----VIEEAPSPLLDPATR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLS-RKVFWLEINV 264
             +   A    +++   G    +F+       + F++E+N 
Sbjct: 253 ARIGAAACDTARSVDYTGAGTVEFIVSADRPDEFFFMEMNT 293


>gi|237800688|ref|ZP_04589149.1| 3-methylcrotonyl-CoA carboxylase alpha subunit [Pseudomonas
           syringae pv. oryzae str. 1_6]
 gi|331023547|gb|EGI03604.1| 3-methylcrotonyl-CoA carboxylase alpha subunit [Pseudomonas
           syringae pv. oryzae str. 1_6]
          Length = 322

 Score = 77.5 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 78/221 (35%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      +E   + +      A      K  +K ++   GVP+ P    
Sbjct: 91  AIHPGYGFLSENADFARSIEKAGLIFLGPPASAIDAMGSKSAAKSLMEQAGVPLVPGYHG 150

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
           +   +D    +   I  P ++K   GG   G+ V++    +   L  +           +
Sbjct: 151 DAQDIDTFLAAAERIGYPVLLKATAGGGGKGMKVVEHAVEMAEALASAQREALSSFGDSR 210

Query: 166 LLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           +L+E+Y +    +   V  D   +   +            K          PA  +   +
Sbjct: 211 MLVEKYVISPRHVEIQVFADRHGNCLYLNERDCSIQRRHQK-----VVEEAPAPGLKPQL 265

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            K +   A  A QAIG  G    +FL D    + F++E+N 
Sbjct: 266 RKAMGEAAVTAAQAIGYVGAGTVEFLLDAR-GEFFFMEMNT 305


>gi|269838027|ref|YP_003320255.1| acetyl-CoA carboxylase, biotin carboxylase [Sphaerobacter
           thermophilus DSM 20745]
 gi|269787290|gb|ACZ39433.1| acetyl-CoA carboxylase, biotin carboxylase [Sphaerobacter
           thermophilus DSM 20745]
          Length = 592

 Score = 77.5 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 40/219 (18%), Positives = 73/219 (33%), Gaps = 17/219 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+           I +      A A   DK+ +++V    GVPV P    
Sbjct: 82  AVHPGYGFLAENADFARACAEAGIVFIGPPPEAIAAMGDKVAARRVAQDAGVPVVPGSDG 141

Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI----KKDQSIPLDLLQSSSWNHGDQL 166
            +              P  IK   GG   G  V+    +  ++      ++  +     +
Sbjct: 142 PVDADGAAAFGAAHGYPIAIKAAAGGGGRGFRVVWDAGEVAEAHRAASGEAERYFGDPTV 201

Query: 167 LIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
            +E+Y+D    +   V  DA  +V  +            K             I     +
Sbjct: 202 YVERYLDHPRHVEVQVFADAHGNVVALGERDCSIQRRHQK----LIEESPSPAIDAATRR 257

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +   A    +A+G RG    +FL+     + F++E+N 
Sbjct: 258 RMGETAVALARAVGYRGAGTVEFLY--QDGEFFFIEMNT 294


>gi|205374076|ref|ZP_03226876.1| acetyl-CoA carboxylase biotin carboxylase subunit [Bacillus
           coahuilensis m4-4]
          Length = 459

 Score = 77.5 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 81/220 (36%), Gaps = 16/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+           I +      A +    K  ++  +   GVP+ P    
Sbjct: 77  AIHPGYGFLSENADFADCCRECNIIFVGPTPEAISKMGTKDVARNTMKDAGVPIVPGSEG 136

Query: 111 ILVN-RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
           I+ +    +     I  P +IK   GG   GI V +  + +   +     ++ +      
Sbjct: 137 IVKDVEDALQIAKGIGYPIIIKATAGGGGKGIRVARTPEELEKGVRITQQEALTAFGNPG 196

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+Y++    +   ++ D   +V  +            K             I  D+ 
Sbjct: 197 VYLEKYIEDFRHVEVQILADTYGNVIHLGERDCTIQRRLQKLL----EETPSPAITEDLR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +++   A  A QA+  +G    +F+FD   +K +++E+N 
Sbjct: 253 QQIGEAAVKAAQAVDYQGAGTVEFIFDYHEKKFYFMEMNT 292


>gi|319953862|ref|YP_004165129.1| pyruvate carboxylase [Cellulophaga algicola DSM 14237]
 gi|319422522|gb|ADV49631.1| pyruvate carboxylase [Cellulophaga algicola DSM 14237]
          Length = 1171

 Score = 77.5 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 83/221 (37%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV----CP 109
            +H  +G   E+       E   I +    +       DK+ +K+V  +  +PV      
Sbjct: 100 AIHPGYGFLSENAKFAQACEDNGIIFIGPKVSVLKALGDKITAKEVAVANHIPVIQSSTE 159

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGDQ 165
            ++     +     I  P ++K   GG   G+ VI+ +  +    P    +S +    D 
Sbjct: 160 DLVTVEIALSEAIRIGFPVMLKAASGGGGRGMRVIRTEDELRKGFPEARRESLNAFGDDT 219

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDI 223
           + +E++V+    +   ++ D   ++  +        S + +Y         P+  +P + 
Sbjct: 220 VFLEKFVENPKHIEIQIVADLHGNIVHLYERD---CSVQRRYQ--KVIEFAPSFGLPQET 274

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              +   A    +A+    I   +FL D     ++++E+N 
Sbjct: 275 LNSLYTHAINICKAVNYNNIGTVEFLVD-DDGSIYFIEVNP 314


>gi|319401564|gb|EFV89774.1| pyruvate carboxylase [Staphylococcus epidermidis FRI909]
          Length = 1149

 Score = 77.5 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 32/221 (14%), Positives = 77/221 (34%), Gaps = 20/221 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+           I +    +    +  DK++++    +  +PV P    
Sbjct: 80  AIHPGYGFLSENEQFARRCAEEGIKFIGPHLEHLDMFGDKVKARTTAINANLPVIPGTDG 139

Query: 114 NRFTMDSQHLI----SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
              + ++          P +IK   GG   G+ ++++   +     ++ S         +
Sbjct: 140 PIESFEAAEQFANEAGYPLMIKATSGGGGKGMRIVRESSELEDAFHRAKSEAEKSFGNSE 199

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDI 223
           + IE+Y+D    +   V+GD   ++  +           ++        V P   +   +
Sbjct: 200 VYIERYIDNPKHIEVQVIGDEFGNIIHLYE-----RDCSVQRRHQKVVEVAPSVGLSNKL 254

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +   A    + I        +FL      + F++E+N 
Sbjct: 255 RERICDAAIQLMKNIKYVNAGTVEFLV--SGDEFFFIEVNP 293


>gi|309799750|ref|ZP_07693965.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus infantis
           SK1302]
 gi|308116639|gb|EFO54100.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus infantis
           SK1302]
          Length = 455

 Score = 77.5 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 75/220 (34%), Gaps = 16/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  FG   E+     + E + I +         +  DK+ ++  +    VPV P    
Sbjct: 77  AIHPGFGFLSENSKFATMCEEVGIKFIGPSARVMDVMGDKINARAQMIKANVPVIPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
            +      +     I  P ++K   GG   GI  ++K + +      +SS          
Sbjct: 137 EVHTAEEALAVAEKIGYPVMLKASAGGGGKGIRKVEKAEDLVSAFETASSEAKANFGNGA 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+ +     +   ++ D    V  +            K             I   + 
Sbjct: 197 MYLERVIYPARHIEVQILADQMGHVIHLGERDCSLQRNNQKVL----EESPSIAIGKTLR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            E+   A  A +++G       +FL D  + K +++E+N 
Sbjct: 253 NEIGAAAVRAAESVGYENAGTIEFLLDEATGKFYFMEMNT 292


>gi|168061790|ref|XP_001782869.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162665647|gb|EDQ52324.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 1084

 Score = 77.5 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 52/279 (18%), Positives = 106/279 (37%), Gaps = 36/279 (12%)

Query: 18  SGKACASALEDAGFKVSQID------------VDRS---------VGLVLAHLKPDLAFN 56
           SG     AL++ G++V  I+             DR+         V  VL   +PD    
Sbjct: 16  SGTQACKALKEEGYEVILINSNPATIMTDPETADRTYITPMTPELVEKVLEKERPDAILP 75

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G    +         +L+   +    + + A   + D+   K+ ++  G+   PS  
Sbjct: 76  TMGGQTALNLACALAKSGVLDKYNVELIGAKLDAIEKAEDRELFKKAMAKIGINSPPSGI 135

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
              +++    ++ +   P +I+P       G  +    +          S +   Q+L+E
Sbjct: 136 AHTMDQCFEIAERIGEFPLIIRPAFTLGGTGGGIAYNKEEFETICKAGLSASINSQVLVE 195

Query: 170 QYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
           + + G  E    VM D + +V  I   ++      +   + +S  V PA+ +    Y+ +
Sbjct: 196 KSLLGWKEYELEVMRDLADNVVIICSIEN---IDSMGVHTGDSITVAPAQTLTDKEYQRL 252

Query: 228 QRLAFLAHQAIG--CRGISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG  C G S   F  +P + +V  +E+N 
Sbjct: 253 RDQSVAIIREIGVECGG-SNVQFAVNPKNGEVMIIEMNP 290



 Score = 53.2 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 30/211 (14%), Positives = 80/211 (37%), Gaps = 19/211 (9%)

Query: 68  VQAILELLE---------IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
           +Q  LE  +         +    +   +   + D+ R   +++   +   PS  + +   
Sbjct: 640 IQEYLEKFQPDAASGEGKVKIWGTTPDSIDAAEDRKRFDAILNELEIKS-PSGGIAKSED 698

Query: 119 DS---QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDG 174
           D+      +  P V++P        + ++  D+ +   L  +   +    +L+++Y +D 
Sbjct: 699 DALAIAKRVGYPVVVRPSYVLGGRAMEIVYNDEKLKTYLETAVEVDPERPVLVDKYLIDA 758

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFL 233
            E+    + DA   V    + +   +  +    S +S   LP+  +  +  ++++     
Sbjct: 759 TEIDVDSLTDAEGHVVIGGIME---HIEQAGVHSGDSACTLPSQNLGSEALEKIRDYTTK 815

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             + +G  G+    +    L  +V+ +E N 
Sbjct: 816 LARRLGVVGLMNCQYAIT-LEGEVYIIEANP 845


>gi|298208583|ref|YP_003716762.1| pyruvate carboxylase [Croceibacter atlanticus HTCC2559]
 gi|83848506|gb|EAP86375.1| pyruvate carboxylase [Croceibacter atlanticus HTCC2559]
          Length = 1150

 Score = 77.5 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 82/221 (37%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       +   I +    +       DK+ +KQV     VP+  S   
Sbjct: 79  AIHPGYGFLSENAEFAQKCKDNGIIFIGPKVSVLKSLGDKITAKQVALENNVPIIQSNSK 138

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
           +  ++D        I  P ++K   GG   G+ VI+++  +     +S          D 
Sbjct: 139 DLDSIDIAISEAEAIGYPVMLKAASGGGGRGMRVIREEDELRRAFNESKREALNAFGDDT 198

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDI 223
           + +E++V+    +   ++ D   ++              ++          P+  +   I
Sbjct: 199 VFLEKFVENPKHIEIQIVADNHGNMV-----HLFERDCSVQRRYQKVIEFAPSYDLDTSI 253

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +++ + A    +A+    I   +FL D     ++++E+N 
Sbjct: 254 KEDLYKYAVKICKAVNYNNIGTVEFLVD-DDGSIYFIEVNP 293


>gi|270308372|ref|YP_003330430.1| carbamoyl-phosphate synthase, large subunit [Dehalococcoides sp.
           VS]
 gi|270154264|gb|ACZ62102.1| carbamoyl-phosphate synthase, large subunit [Dehalococcoides sp.
           VS]
          Length = 1079

 Score = 77.5 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/196 (17%), Positives = 67/196 (34%), Gaps = 11/196 (5%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTMDSQHLISPPYVIKPL 133
             P   S   A  L+ D+ R ++++S  G+P  P   I      +     I  P V++P 
Sbjct: 652 GNPIIGSSAEAIDLAEDRRRFERLLSEMGIPQAPGAGITTLDEALSIAESIGYPVVVRPS 711

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
                  + ++     +   +  +   N G  +LI++Y+ G E+    + D         
Sbjct: 712 YVLGGRAMEIVSDASDLIRYMSAAIELNTGHPILIDKYLVGKEVEVDAIADGETVFIPGV 771

Query: 194 VPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
           +   +           +S  V P   +       +        +A+  RG+    F+   
Sbjct: 772 MEHIERAGVHS----GDSMAVYPTQNLNAHDLATISDYTIRIGKALNVRGLMNIQFVVSK 827

Query: 253 L----SRKVFWLEINV 264
                   V+ LE+N 
Sbjct: 828 DPEGGDNIVYVLEVNP 843



 Score = 74.0 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 40/232 (17%), Positives = 82/232 (35%), Gaps = 9/232 (3%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMR 95
            S+  ++   +PD     L G  G +  V      +L    +    + I     + D+  
Sbjct: 69  ESITKIIEKERPDGLLPTLGGQTGLNLAVDLADAGVLAKYNVRSLGTPINTIRTAEDREL 128

Query: 96  SKQVVSSCGVPVCPSILVNR--FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153
            K++++  G PV PS  V      +     I  P VI+P       G         +   
Sbjct: 129 FKELLAEIGEPVPPSETVTTAGDALKIARKIGLPVVIRPAYTLGGTGGGFAHNWDEVEEV 188

Query: 154 LLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212
                + +   Q+L+E+ V G  E+   VM D + +   I     + +     ++  +  
Sbjct: 189 AQTGLNASPIHQILVEKSVAGWKEIEYEVMRDGADNCITIC--NMENFDPMGVHTGDSIV 246

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            V    +     + ++  +    +A+G  G        +P   + + +E+N 
Sbjct: 247 VVPVQTLTNKESQMLRTASIKIIRALGIEGGCNVQLSLNPNGNEYYVIEVNP 298


>gi|154245170|ref|YP_001416128.1| Urea carboxylase [Xanthobacter autotrophicus Py2]
 gi|154159255|gb|ABS66471.1| Urea carboxylase [Xanthobacter autotrophicus Py2]
          Length = 1180

 Score = 77.5 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 41/256 (16%), Positives = 93/256 (36%), Gaps = 30/256 (11%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+      L    I +             K  ++ +  + GVP+ P    
Sbjct: 77  AVHPGYGFLSENVAFAQRLADEGIRFIGPKPEHLKDFGLKHTARALAKASGVPLLPGTDL 136

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ----SSSWNHGDQL 166
           +      + +   I+ P ++K   GG  +G+ +    Q +     +    + +     ++
Sbjct: 137 LESAEEALKAAEAITYPVMLKSTAGGGGIGMQLCHTPQELADTFERVQRTARASFGDARV 196

Query: 167 LIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIY 224
            +E++V +   +   + GD    V  +           L+  +       PA +   D+ 
Sbjct: 197 YLERFVAEARHVEVQIFGDGKGKVVALGE-----RDCSLQRRNQKVVEETPAPLLSDDVR 251

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI---FPEMAAYA 281
             +   A    Q++        +F++DP  ++ ++LE+N +       +    P   A  
Sbjct: 252 ASLHAAAVQLGQSVAYESAGTVEFIYDPARQEFYFLEVNTR-------LQVEHPVTEAVF 304

Query: 282 GYSFRELLLWMVEDAS 297
           G    +L+ WM+  A+
Sbjct: 305 GI---DLVEWMIRQAA 317


>gi|322387211|ref|ZP_08060821.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus infantis
           ATCC 700779]
 gi|321141740|gb|EFX37235.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus infantis
           ATCC 700779]
          Length = 455

 Score = 77.5 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 75/220 (34%), Gaps = 16/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  FG   E+     + E + I +         +  DK+ ++  +    VPV P    
Sbjct: 77  AIHPGFGFLSENSKFATMCEEVGIKFIGPSARVMDVMGDKINARAQMIKANVPVIPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
            +      +     I  P ++K   GG   GI  ++K + +      +SS          
Sbjct: 137 EVHTAEEALAIAEKIGYPVMLKASAGGGGKGIRKVEKAEDLVSAFETASSEAKANFGNGA 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+ +     +   ++ D    V  +            K             I   + 
Sbjct: 197 MYLERVIYPARHIEVQILADQMGHVIHLGERDCSLQRNNQKVL----EESPSIAIGKTLR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            E+   A  A +++G       +FL D  + K +++E+N 
Sbjct: 253 NEIGAAAVRAAESVGYENAGTIEFLLDEATGKFYFMEMNT 292


>gi|56750828|ref|YP_171529.1| carbamoyl phosphate synthase large subunit [Synechococcus elongatus
           PCC 6301]
 gi|81299522|ref|YP_399730.1| carbamoyl phosphate synthase large subunit [Synechococcus elongatus
           PCC 7942]
 gi|56685787|dbj|BAD79009.1| carbamoyl-phosphate synthase pyrimidine-specific large chain
           [Synechococcus elongatus PCC 6301]
 gi|81168403|gb|ABB56743.1| carbamoyl-phosphate synthase large subunit [Synechococcus elongatus
           PCC 7942]
          Length = 1097

 Score = 77.5 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 57/279 (20%), Positives = 102/279 (36%), Gaps = 36/279 (12%)

Query: 18  SGKACASALEDAGFKVSQID------------VDRS---------VGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++             DR+         V  V+   +PD    
Sbjct: 29  SGTQACKALREEGYEVVLVNSNPATIMTDPETADRTYIEPLTPELVAQVIERERPDALLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  V       L+   +    + + A   + D++  K+ +   GV VCPS +
Sbjct: 89  TMGGQTALNLAVALAKNGTLDRFGVELIGAKLEAIEKAEDRLLFKEAMERIGVKVCPSGI 148

Query: 113 VN---RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            N        ++ + + P +I+P       G  +    +   L +      +   Q+L+E
Sbjct: 149 ANNMAEAQAIAEQIGTYPLIIRPAFTMGGTGGGIAYNQEEFELIVQSGLDASPVSQILVE 208

Query: 170 QYVDG-IELTCGVMGD-ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKE 226
           Q + G  E    VM D A   V   ++   D           +S  V PA+ +    Y+ 
Sbjct: 209 QSLIGWKEFELEVMRDLADNVVIICSIENLDPMGVHT----GDSITVAPAQTLTDKEYQR 264

Query: 227 VQRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           ++  A    + IG   G S   F  +P    V  +E+N 
Sbjct: 265 LRDQAIAIIREIGVETGGSNIQFAINPQDGDVIVIEMNP 303



 Score = 55.1 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 27/188 (14%), Positives = 70/188 (37%), Gaps = 9/188 (4%)

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSS 138
            +   +   + D+ R +Q++    +    + L       +   H I  P V++P      
Sbjct: 685 GTSPDSIDTAEDRERFEQILRQLDIAQPANGLARSPEEALAIAHRIGYPTVVRPSYVLGG 744

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKS 197
             + ++  D  +   + ++        +LI+++++  IE+    + D +  V    + + 
Sbjct: 745 RAMEIVYSDAELERYMTEAVQVEPDHPILIDKFLENAIEVDVDALADRTGQVVIGGIME- 803

Query: 198 DFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256
             +  +    S +S   LP   +   + + ++       +A+   G+    F       +
Sbjct: 804 --HIEQAGIHSGDSACSLPTVSLNETVLETIRAWTTQLAKALNVIGLMNIQFAV--KDEQ 859

Query: 257 VFWLEINV 264
           V+ LE N 
Sbjct: 860 VYILEANP 867


>gi|223935114|ref|ZP_03627032.1| acetyl-CoA carboxylase, biotin carboxylase [bacterium Ellin514]
 gi|223895998|gb|EEF62441.1| acetyl-CoA carboxylase, biotin carboxylase [bacterium Ellin514]
          Length = 460

 Score = 77.5 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/223 (15%), Positives = 74/223 (33%), Gaps = 22/223 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     + E   I +      A     DK  S+ +    GVP+ P    
Sbjct: 77  AIHPGYGFLSENAHFADVCESCNIRFIGPSSRAMNAMEDKAVSRSLAKKAGVPIPPGSEG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD----QSIPLDLLQSSSWNHGDQ 165
            +   +  +     I  P +IK + GG   G+ V   D    +       ++        
Sbjct: 137 IVENEQEALVVAKRIGYPVMIKAVAGGGGRGMRVAHNDISLVKGYHTARTEAEKAFGNSG 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL--- 221
           + IE++++    +   ++GD    +  +            K          P+ +     
Sbjct: 197 VYIEKFIENPHHIEFQILGDNKGHIIHLGERDCSIQRRNQK-----VVEETPSPLIEGKF 251

Query: 222 -DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
             +  ++ + A    +          +F+ D  +   ++LE+N
Sbjct: 252 RKLRDKMGKAAVKIAELAHYTNAGTVEFIVDN-NGNYYFLEMN 293


>gi|159035705|ref|YP_001534958.1| carbamoyl-phosphate synthase L chain ATP-binding [Salinispora
           arenicola CNS-205]
 gi|157914540|gb|ABV95967.1| Carbamoyl-phosphate synthase L chain ATP-binding [Salinispora
           arenicola CNS-205]
          Length = 445

 Score = 77.5 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 83/220 (37%), Gaps = 16/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      +E   + +   G  A     DK+ ++ ++++ GVPV P    
Sbjct: 77  AIHPGYGFLSENADFAQAVEASGLIWVGPGADAITAMGDKINARNLMAAAGVPVAPGTTE 136

Query: 114 NRFTMDSQHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
               + +       I  P ++K   GG  +G+ +   + ++  +  +  S+         
Sbjct: 137 PAADLAAAVDAAAGIGYPVMVKAAAGGGGMGMGIANDEAALRTEFDKVRSFAERMFGDGS 196

Query: 166 LLIEQ-YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           +LIE+ +     +   ++G A   V  +   +        K             +  ++ 
Sbjct: 197 VLIERYFPRVRHVEVQILGLADGRVVALGERECSVQRRNQK----LVEESPSPAVTPELR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
                 A  A +A+G R     + L DP + + F+LE+N 
Sbjct: 253 SRFLAAAVRAGEAVGYRNAGTVECLLDPTTDEFFFLEMNT 292


>gi|114566807|ref|YP_753961.1| carbamoyl-phosphate synthase large subunit [Syntrophomonas wolfei
           subsp. wolfei str. Goettingen]
 gi|114337742|gb|ABI68590.1| carbamoyl-phosphate synthase large subunit [Syntrophomonas wolfei
           subsp. wolfei str. Goettingen]
          Length = 1074

 Score = 77.5 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 52/290 (17%), Positives = 102/290 (35%), Gaps = 32/290 (11%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ------ 69
           AL DAG K   +         D D S  L    L  +   N++     E  +VQ      
Sbjct: 581 ALRDAGIKAIIVNNNPETVSTDFDTSDRLYFEPLVYEDVMNIIDEEQPEGVIVQFGGQTA 640

Query: 70  ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHL 123
               A L    +    +   +   + D+ R   +V   G+P  P   V      + +   
Sbjct: 641 INLVAALNRAGVKILGTSNDSIDRAEDRERFDLMVEKLGIPRPPGKTVFSVEEAVKAAEK 700

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + ++     +   +  + + N    +L+++Y+ G E+      
Sbjct: 701 IGYPVLLRPSYVLGGRAMEIVYNVDELRQYMQTAVNVNREHPVLVDKYLLGKEIEV---- 756

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRG 242
           DA  D  ++ +P    +       S +S  V PA  +   I  +V        + +  +G
Sbjct: 757 DAVCDGLQVLIPGIMQHIERAGVHSGDSMAVFPAHDLSPAIKDKVVDYTLRLARELEVKG 816

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +    F       +++ LE+N +   T     P ++   G    +L   +
Sbjct: 817 LINIQF--VEFEDELYVLEVNPRSSRT----VPFISKVTGIPLVKLGTEI 860



 Score = 66.3 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 48/237 (20%), Positives = 96/237 (40%), Gaps = 19/237 (8%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMR 95
            +V  ++A  KPD     L G  G +  +      +LE   +P     + A A + D+ +
Sbjct: 72  ETVNKIIAREKPDGIIANLGGQVGLNMALALDRAGVLEETGVPLLGMPLDAIARAEDREK 131

Query: 96  SKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153
            K  +   G P+  S +V+     +     I  P +++P       G      ++ +   
Sbjct: 132 FKATMQEIGEPIPESDIVHSVEEAIRFAEKIGYPVIVRPAYTLGGTGGGTAYDNEELQQI 191

Query: 154 LLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIA----VPKSDFYSYELKYSS 208
           +++    +  +Q LIE+ V G  E+   VM DA+ +   I     V     ++       
Sbjct: 192 VVKGLKNSPINQALIERSVAGFKEIEFEVMRDANDNCITICSMENVDPVGIHT------- 244

Query: 209 LNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +S  V PA+ +  + Y+ ++  +    + +   G     +  DP S+K + +E+N 
Sbjct: 245 GDSIVVAPAQTLSDEEYQMLRASSLKIIRHLKIIGGCNVQYALDPFSKKYYVIEVNP 301


>gi|332664473|ref|YP_004447261.1| acetyl-CoA carboxylase, biotin carboxylase [Haliscomenobacter
           hydrossis DSM 1100]
 gi|332333287|gb|AEE50388.1| acetyl-CoA carboxylase, biotin carboxylase [Haliscomenobacter
           hydrossis DSM 1100]
          Length = 446

 Score = 77.5 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 81/220 (36%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     +     I +            DK+ +K+ + +  VPV P    
Sbjct: 77  AVHPGYGFLAENADFAEVCLEYGIKFIGPTPEQIRKMGDKITAKETMIAAQVPVVPGSGG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL----DLLQSSSWNHGDQ 165
            +            +  P ++K   GG   G+ ++ K++          +++ +    D 
Sbjct: 137 LLQDVPAGKKQAKEVGYPIILKATAGGGGKGMRIVWKEEDFESAWNTARMEAKASFSNDG 196

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+Y++    +   ++GD    V  ++           K             +  ++ 
Sbjct: 197 IYMEKYIEEPRHIEFQIVGDQYGKVIHLSERDCSIQRRHQK----LVEECPSPFMTDELR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +++   A  A +AI   G+   +FL D   R  +++E+N 
Sbjct: 253 EKMGNAAVKAGEAIKYEGVGTIEFLVDKY-RNFYFMEMNT 291


>gi|266620894|ref|ZP_06113829.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Clostridium
           hathewayi DSM 13479]
 gi|288867474|gb|EFC99772.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Clostridium
           hathewayi DSM 13479]
          Length = 446

 Score = 77.5 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 41/220 (18%), Positives = 76/220 (34%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--I 111
            +H  FG   E+     + E   I +            +K  +++ +   GVPV P    
Sbjct: 77  AIHPGFGFLSENARFAELCEKCNITFIGPSAEIINKMGNKSEARKTMMEAGVPVVPGGKE 136

Query: 112 LVNRFTMDS--QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL----DLLQSSSWNHGDQ 165
            V+           I  P +IK   GG   G+ + +  +          ++S      D 
Sbjct: 137 AVHEVEEARLVAEKIGYPVMIKASSGGGGKGMRISRGPEDFDANFQNAQMESVKGFSDDT 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+Y++    +   +M D   +V  +            K           A I  ++ 
Sbjct: 197 MYIEKYIEKPRHIEFQIMADKYGNVVHLGERDCSIQRRHQKVL----EESPSAAISEELR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K +   A  A +A+G       +FL D      +++E+N 
Sbjct: 253 KRMGDTAVRAAKAVGYENAGTIEFLLDKHKN-FYFMEMNT 291


>gi|283795621|ref|ZP_06344774.1| carbamoyl-phosphate synthase, large subunit [Clostridium sp. M62/1]
 gi|291077292|gb|EFE14656.1| carbamoyl-phosphate synthase, large subunit [Clostridium sp. M62/1]
          Length = 1088

 Score = 77.5 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 47/286 (16%), Positives = 100/286 (34%), Gaps = 33/286 (11%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQIDVD---------------------RSVGLV 45
           G ++E + +   G     AL + G ++  ++ +                      +V  +
Sbjct: 21  GQAAEFDYA---GAQACRALREEGLEIVLVNSNPATIMTDHMMADRIYIEPLTLETVKRI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   KPD   + L G  G    +Q      LE   +    S       + D+   K  + 
Sbjct: 78  IEKEKPDSILSGLGGQTGLTLCMQLAHDGFLEEHGVKLLGSSPETIDRAEDRQLFKDTME 137

Query: 102 SCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
           S G P  PS +VN     ++    I  P +++P       G  +   ++ +        +
Sbjct: 138 SIGQPCVPSKVVNETEDALEFAKTIGYPVIVRPAFTLGGTGGGIADSEEELREIARNGLA 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   Q+L+E+ + G  E+   V+ D + +   I V   + +     ++  +        
Sbjct: 198 LSPIHQILVEKGISGWKEIEFEVIRDRTGN--CITVCSMENFDPVGIHTGDSIVIAPAVT 255

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +    Y+ ++  A      +   G     F  +P S +   +E+N 
Sbjct: 256 LADREYQMLRSAALRIVDTLQVEGGCNCQFALNPESFEYAVIEVNP 301



 Score = 73.6 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 43/292 (14%), Positives = 103/292 (35%), Gaps = 38/292 (13%)

Query: 22  CASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHG--------NFGE 64
           C   L+  G++V  +         D D +  L    L  +   N+L           FG 
Sbjct: 577 CVQVLKGLGYEVVIVNNNPETVSTDFDTADRLYFEPLTTEDVKNILQAEKPCGVVVAFGG 636

Query: 65  DGLVQ--AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--S 120
              ++    L    +P   +   +  ++ D+ R  +++    +       V        +
Sbjct: 637 QTAIRLTRFLAESGVPVIGTCADSIDMAEDRERFDELLDRLHIAKPKGHTVMTEEEAIRA 696

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P +++P        +I+   +  I   +    + N  + +LI++Y++G E+   
Sbjct: 697 AESVGYPVLMRPSYVLGGQNMIIAFDEADIREYMKIILAQNIENPVLIDKYLEGTEIEVD 756

Query: 181 VMGDAS---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQ 236
            + D +   L      V +S  +S        +S  + PA  +  +  +++        +
Sbjct: 757 AIYDGTDILLPGIMEHVERSGIHS-------GDSIAIYPAMHLTPETEEKIAETTKKLCE 809

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
            +   GI    ++      +++ +E+N +   T     P ++   G    +L
Sbjct: 810 GLNAVGIVNVQYIV--ADGEIYIIEVNPRASRT----VPYLSKVTGVPMVDL 855


>gi|197121101|ref|YP_002133052.1| acetyl-CoA carboxylase, biotin carboxylase [Anaeromyxobacter sp. K]
 gi|220915803|ref|YP_002491107.1| acetyl-CoA carboxylase, biotin carboxylase [Anaeromyxobacter
           dehalogenans 2CP-1]
 gi|196170950|gb|ACG71923.1| acetyl-CoA carboxylase, biotin carboxylase [Anaeromyxobacter sp. K]
 gi|219953657|gb|ACL64041.1| acetyl-CoA carboxylase, biotin carboxylase [Anaeromyxobacter
           dehalogenans 2CP-1]
          Length = 460

 Score = 77.5 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 83/220 (37%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            LH  +G   E+    A++E + + +         L  +K+ +++     G+P+ P    
Sbjct: 77  ALHPGYGFLSENAEFAAMVEKMGLKFIGPRPEMIRLMGNKVAAREAAEQAGLPLLPGARG 136

Query: 112 -LVNRFTMDS-QHLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGDQ 165
            L +    +     +  P ++K   GG   G+ + +    I         ++ +      
Sbjct: 137 KLADAEEAERIAEQVGYPVILKAAAGGGGRGMKICRDRSQIRQLFETASTEALAAFGDGS 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+YV+    +   ++ D   ++  +   +        K             +  ++ 
Sbjct: 197 MYLERYVEMPRHIELQIVADEHGNIIHLGERECSVQRRHQK----LIEESPSPAVTPELR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +E+  +A  A + IG   +   +FL D   R  +++E+N 
Sbjct: 253 REMGEVALKAMRKIGYNNVGTIEFLMDEKGR-YYFMEMNT 291


>gi|51476873|emb|CAH18403.1| hypothetical protein [Homo sapiens]
          Length = 575

 Score = 77.5 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/176 (19%), Positives = 69/176 (39%), Gaps = 16/176 (9%)

Query: 99  VVSSCGVPVCPSIL----VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154
           ++++ GVPV          ++   +    I  P +IK ++GG   G+ +++ +Q     L
Sbjct: 19  IMAAAGVPVVEGYHGEDQSDQCLKEHARRIGYPVMIKAVRGGGGKGMRIVRSEQEFQEQL 78

Query: 155 LQSSSWNH----GDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209
             +          D +LIE++VD    +   V GD   +   +           ++    
Sbjct: 79  ESARREAKKSFNDDAMLIEKFVDTPRHVEVQVFGDHHGNAVYL-----FERDCSVQRRHQ 133

Query: 210 NSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
                 PA  I  ++ K++   A  A +A+   G    +F+ D       ++E+N 
Sbjct: 134 KIIEEAPAPGIKSEVRKKLGEAAVRAAKAVNYVGAGTVEFIMDSKHN-FCFMEMNT 188


>gi|117923976|ref|YP_864593.1| acetyl-CoA carboxylase, biotin carboxylase [Magnetococcus sp. MC-1]
 gi|117607732|gb|ABK43187.1| acetyl-CoA carboxylase, biotin carboxylase [Magnetococcus sp. MC-1]
          Length = 445

 Score = 77.5 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 86/220 (39%), Gaps = 18/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     I++   + +         L  +K+++++ + + GVPV      
Sbjct: 77  AIHPGYGFLSENPEFAEIVKASGLTFIGPEPEVIRLMGNKVQARKTMIAAGVPVVQGSEG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
            +      +     I  P +IK + GG   G+ V+  +  +         ++  +   D 
Sbjct: 137 AVNSEEDALRIAREIGFPVIIKAVGGGGGRGMKVVHAEAGLIRAYTVARNEARQFFRNDA 196

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+Y++    +   +M D   +   +        S + ++  +      PA +  +  
Sbjct: 197 IYIEKYLEAPRHVEIQIMCDRHGNAVHLGERD---CSLQRRHQKILEEAPSPA-VSPEER 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +  LA  A  A+G  G    +FL+D      ++LE+N 
Sbjct: 253 HRLGTLAAKAAHAVGYEGAGTFEFLYDK--GNFYFLEMNT 290


>gi|319892195|ref|YP_004149070.1| Carbamoyl-phosphate synthase large chain [Staphylococcus
           pseudintermedius HKU10-03]
 gi|317161891|gb|ADV05434.1| Carbamoyl-phosphate synthase large chain [Staphylococcus
           pseudintermedius HKU10-03]
 gi|323464704|gb|ADX76857.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus
           pseudintermedius ED99]
          Length = 1057

 Score = 77.5 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 48/297 (16%), Positives = 112/297 (37%), Gaps = 36/297 (12%)

Query: 25  ALEDAGFKVSQID---------------------VDRSVGLVLAHLKPDLAFNVLHGNFG 63
           AL++ G++V  ++                         +  ++   +PD     L G  G
Sbjct: 36  ALKEEGYRVILVNSNPATIMTDKEIADKVYIEPLTHDFIARIIRKEQPDALLPTLGGQTG 95

Query: 64  EDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFT 117
            +  ++     +L    +    + + +   + D+   + +++   VPV  S +VN     
Sbjct: 96  LNMAIELHNSGVLAENNVTLLGTKLSSIEQAEDRELFRSLMNDLNVPVPESDIVNTLEQA 155

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IE 176
              +  +  P +++P       G  +   D+ +   +     ++   Q LIE+ + G  E
Sbjct: 156 FAFKEAVGYPLIVRPAFTMGGTGGGICHNDEELREVVSNGLKYSPATQCLIEKSIAGFKE 215

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAH 235
           +   VM D + +   I V   +     +   + +S  V P++ +    Y+ ++ ++    
Sbjct: 216 IEYEVMRDKNDNA--IVVCNMENID-PVGIHTGDSVVVAPSQTLSDVEYQMLRDVSLKVI 272

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +A+   G        DP S + + +E+N  P ++  S     +   GY   +L   +
Sbjct: 273 RALEIEGGCNVQLALDPHSMQFYIIEVN--PRVSRSS--ALASKATGYPIAKLAAKI 325



 Score = 69.4 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 25/196 (12%), Positives = 69/196 (35%), Gaps = 9/196 (4%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           L    +    + +     + D+   + +++   VP          +  +D+   I  P V
Sbjct: 646 LAKYGVKILGTSLEDLNRAEDRKEFEALLNKIDVPQPKGKTATSAQEALDNARDIGYPVV 705

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           ++P        + ++  D  +   + ++   +    +L+++Y+ G E+    + D    +
Sbjct: 706 VRPSYVLGGRAMEIVYNDAELENYMNEAVKASPEHPVLVDRYLTGKEIEVDAISDGETVM 765

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               +   +           +S  V P + +  D+   ++       + +   G+    F
Sbjct: 766 IPGIMEHIERAGVHS----GDSIAVYPPQTLSQDVIDTLEAYTIKLAKGLNVIGLINIQF 821

Query: 249 LFDPLSRKVFWLEINV 264
           +       V+ LE+N 
Sbjct: 822 VLAHDG--VYVLEVNP 835


>gi|284048652|ref|YP_003398991.1| carbamoyl-phosphate synthase, large subunit [Acidaminococcus
           fermentans DSM 20731]
 gi|283952873|gb|ADB47676.1| carbamoyl-phosphate synthase, large subunit [Acidaminococcus
           fermentans DSM 20731]
          Length = 1068

 Score = 77.5 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 43/297 (14%), Positives = 106/297 (35%), Gaps = 43/297 (14%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ------ 69
           AL+D G++   +         D D +  L    L  +   NV+     E  +VQ      
Sbjct: 580 ALKDLGYETIIVNNNPETVSTDFDTADRLYFEPLTLEDVLNVIDREKPEGVIVQFGGQTA 639

Query: 70  ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQHL 123
                 L    +    S + +   + D+ R  ++++S G+P      V      + + + 
Sbjct: 640 INLAGPLHECGVKILGSSVDSIDRAEDRERFDELLTSVGIPRPKGHTVFDIDGALKAAND 699

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           +  P +++P        + ++  D+ +   +  +   +    +L++ Y+ G E+    + 
Sbjct: 700 VGYPVMVRPSYVLGGRAMEIVYNDEELKYYMNNAVKASQEHPVLVDHYLMGTEVEVDAIC 759

Query: 184 DAS---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIG 239
           D     +      + ++  +S        +S  V P + +   + +++          + 
Sbjct: 760 DGKDVLMPGIMEHIERAGVHS-------GDSIAVYPPRTLSEHVIEQIIDYTTKLALGLE 812

Query: 240 CRGISRSDFLFDPLSRKVFWLEIN-----VQPGM---TPVSIFPEMAA-YAGYSFRE 287
             G+    ++      K++ +E+N       P +   T +S+         G S R+
Sbjct: 813 VHGMINIQYIVR--DDKLYVIEVNPRSSRTVPFLSKVTGISMVDVATKCAMGVSIRD 867



 Score = 62.4 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 48/287 (16%), Positives = 102/287 (35%), Gaps = 35/287 (12%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI---------DVD------------RSVGLV 45
           G ++E + S   G     AL++ G +V  +         DV               +  +
Sbjct: 21  GQAAEFDYS---GTQACRALKEEGLEVVLVNSNPATIMTDVHIADRVYVEPLDVEFLEAI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +A  +PD     L G  G +  ++     IL+   +    + I +   + D+   K+ + 
Sbjct: 78  IAKERPDSLLATLGGQIGLNLAIELDKKGILKKYNVQLLGTQIASIMKAEDRELFKETME 137

Query: 102 SCGVPVCPSILVNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
               P+  S +V       +    +  P +++P       G  +      +     +   
Sbjct: 138 KLHQPIPQSTIVESVDAAKEFAQKVGFPLIVRPAYTLGGTGGGIAHNMDQLDDITTKGLM 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
           ++   Q LIE+ V G  E+   V+ D   +   I V   +       ++  +S  V P +
Sbjct: 198 YSLIGQALIERSVAGWKEIEYEVVRDHEDN--CITVCNMENIDPVGVHT-GDSIVVAPCQ 254

Query: 219 -IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +     + ++  A    + +G  G     +  +P S +   +E+N 
Sbjct: 255 TLTDREVQMLRTAAIDIVRELGVEGACNVQYALNPDSEEYIVIEVNP 301


>gi|254293964|ref|YP_003059987.1| carbamoyl-phosphate synthase L chain ATP-binding [Hirschia baltica
           ATCC 49814]
 gi|254042495|gb|ACT59290.1| Carbamoyl-phosphate synthase L chain ATP-binding [Hirschia baltica
           ATCC 49814]
          Length = 627

 Score = 77.5 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 37/226 (16%), Positives = 83/226 (36%), Gaps = 24/226 (10%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H  +G   E+      +    + +      +      K  +K ++   G+P  P  L 
Sbjct: 77  AIHPGYGFLSENATFADAVIDAGLIWIGPKSSSIQAMGLKDAAKTLMEKAGIPCTPGYLG 136

Query: 113 ----VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGD 164
               + R   +++ +I  P +IK + GG   G+  +    +    L     +++S    D
Sbjct: 137 EDQSLKRLEKEAK-IIGYPVLIKAVAGGGGKGMRKVDNASNFANALKSCQREAASSFGDD 195

Query: 165 QLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLD 222
           ++L+E+++     +   + GD   ++              L+          PA  +  +
Sbjct: 196 RVLLEKWITAPRHIEVQIFGDKHGNIV-----HLFERDCTLQRRHQKVIEEAPAFGMNQE 250

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS----RKVFWLEINV 264
               +   A LA QA+   G    +F+ D         ++++E+N 
Sbjct: 251 TRARICETAILAAQAVDYEGAGTIEFIADASGELNPDSIWFMEMNT 296


>gi|229017862|ref|ZP_04174745.1| Biotin carboxylase [Bacillus cereus AH1273]
 gi|229024065|ref|ZP_04180539.1| Biotin carboxylase [Bacillus cereus AH1272]
 gi|228737243|gb|EEL87764.1| Biotin carboxylase [Bacillus cereus AH1272]
 gi|228743453|gb|EEL93570.1| Biotin carboxylase [Bacillus cereus AH1273]
          Length = 445

 Score = 77.5 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 81/220 (36%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       +   I +             K+ S+ V+ +  VPV P I  
Sbjct: 77  AIHPGYGLLSENPSFPIRCKEEGIVFIGPSEEIITKMGSKIESRIVMQAADVPVVPGITT 136

Query: 114 N----RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
           N       ++    I  P ++K   GG  +G+ +++ +Q++         ++ ++    +
Sbjct: 137 NIETAEEAIEIAKQIGYPLMLKASAGGGGIGMQLMETEQTLTKAFESNKTRAQNFFGNGE 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+Y+ D   +   ++ D   +   +   +        K             +     
Sbjct: 197 MYLERYIADAHHIEIQLLADTHGNTVYLWERECSVQRRNQK----VIEEAPSPFLDEGTR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K +  +A  A +A+G       +FL D      ++LE+N 
Sbjct: 253 KAMGEVAVQAAKALGYTNAGTVEFLVDDQKN-FYFLEMNT 291


>gi|229019149|ref|ZP_04175983.1| Pyruvate carboxylase [Bacillus cereus AH1273]
 gi|229025392|ref|ZP_04181810.1| Pyruvate carboxylase [Bacillus cereus AH1272]
 gi|228735977|gb|EEL86554.1| Pyruvate carboxylase [Bacillus cereus AH1272]
 gi|228742165|gb|EEL92331.1| Pyruvate carboxylase [Bacillus cereus AH1273]
          Length = 1148

 Score = 77.5 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 32/243 (13%), Positives = 84/243 (34%), Gaps = 21/243 (8%)

Query: 35  QIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSM 91
            ID    +  ++   K +   + +H  +G   E+       E  EI +         +  
Sbjct: 62  PIDAYLDIEGIIEIAKSNHV-DAIHPGYGFLSENIQFAKRCEEEEIIFIGPKSKHLDMFG 120

Query: 92  DKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147
           DK++++       +PV P     +       +       P +IK   GG   G+ +++  
Sbjct: 121 DKVKARTQAQLAQIPVIPGSDGPVNSLEEVAEFAEKYDYPIIIKASLGGGGRGMRIVRAS 180

Query: 148 QSIPL----DLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSY 202
           + +         ++ +    D++ +E++V+    +   ++ D   +V             
Sbjct: 181 EELRESYNRAKSEAKAAFGNDEVYVEKFVEKPKHIEVQILADEEGNVV-----HLFERDC 235

Query: 203 ELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
            ++        + P   +  D+ + +   A    + +        +FL      + +++E
Sbjct: 236 SVQRRHQKVVEIAPSVSLSDDLRQRICDAAVKLTKNVNYLNAGTVEFLV--KGDEFYFIE 293

Query: 262 INV 264
           +N 
Sbjct: 294 VNP 296


>gi|254420531|ref|ZP_05034255.1| Carbamoyl-phosphate synthase L chain, ATP binding domain protein
           [Brevundimonas sp. BAL3]
 gi|196186708|gb|EDX81684.1| Carbamoyl-phosphate synthase L chain, ATP binding domain protein
           [Brevundimonas sp. BAL3]
          Length = 654

 Score = 77.5 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 37/203 (18%), Positives = 69/203 (33%), Gaps = 19/203 (9%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM----DSQHLISPPYVIK 131
            + +      +      K  +K+++   GVPV P       +          I  P +IK
Sbjct: 99  GLIWIGPDPASIRAMGLKDAAKELMIQAGVPVTPGYQGADQSEATLTAEAARIGYPVLIK 158

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQS----SSWNHGDQLLIEQYVD-GIELTCGVMGDAS 186
            + GG   G+  +         L  +    ++    D++LIE+Y+     +   V GD  
Sbjct: 159 AVAGGGGKGMKRVDDPADFAAGLASAKREGAAAFGDDRVLIERYITRPRHIEVQVFGDRH 218

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISR 245
            DV              L+          PA  +   +   V   A  A +A+   G   
Sbjct: 219 GDVV-----HLFERDCSLQRRHQKVIEEAPAPGMSEAVRAAVTGAAIKAAKAVNYVGAGT 273

Query: 246 SDFLFDPLSR----KVFWLEINV 264
            +F+ D         ++++E+N 
Sbjct: 274 IEFIADASDGLKADGIWFMEMNT 296


>gi|154174589|ref|YP_001407396.1| acetyl-CoA carboxylase subunit A [Campylobacter curvus 525.92]
 gi|112802332|gb|EAT99676.1| biotin carboxylase (Acetyl-CoA carboxylase subunit A) (ACC)
           [Campylobacter curvus 525.92]
          Length = 479

 Score = 77.5 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 89/222 (40%), Gaps = 20/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H  +G   E+     ++E   + +            DK  ++ ++   G+P+ P    
Sbjct: 76  AIHPGYGFLSENYEFAKMVEDAGLIFIGPKADVIRKMGDKNIARYLMKKNGIPIVPGTEK 135

Query: 113 VNRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
           +N  +MD+       I  P ++K   GG   GI  + +++ +         ++ ++ + D
Sbjct: 136 LNDDSMDTIKEHARRIGYPVILKASGGGGGRGIREVWQEEDMENAFNSCTREAKAYFNND 195

Query: 165 QLLIEQ-YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
           ++ +E+  V+   +   ++GD   ++  +            K        + P   I  +
Sbjct: 196 EVFMEKLVVNPRHIEFQILGDNYGNIIHLCERDCSIQRRHQK-----IIEIAPCPSISEN 250

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + K +   A  A +A+G   +   +FL D  +   +++E+N 
Sbjct: 251 LRKVMGMTAVAAAKAVGYSNVGTIEFLLDDYNN-FYFMEMNT 291


>gi|315443597|ref|YP_004076476.1| acetyl/propionyl-CoA carboxylase, subunit alpha [Mycobacterium sp.
           Spyr1]
 gi|315261900|gb|ADT98641.1| acetyl/propionyl-CoA carboxylase, alpha subunit [Mycobacterium sp.
           Spyr1]
          Length = 660

 Score = 77.5 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 76/221 (34%), Gaps = 17/221 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      L    + +    + A     DK+ +K  VS  GVPV P I  
Sbjct: 77  AVHPGYGFLSENSQFADALRSAGVVFIGPPVAAIQTMGDKISAKAAVSEFGVPVVPGISR 136

Query: 114 NRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
              T D        +  P ++KP  GG   G+ V+     +   L  +          D 
Sbjct: 137 PGLTDDDLIAGAPDVGFPVLVKPSAGGGGKGMRVVHDAADLAAALASARREAASAFGDDT 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           L +E++V +   +   V+ D+  +V  +   +        K             +     
Sbjct: 197 LFLERFVLNPRHIEVQVLADSHGNVVHLGERECSLQRRHQK----VIEEAPSPLLDPATR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLS-RKVFWLEINV 264
             +   A    +++   G    +F+       + F++E+N 
Sbjct: 253 ARIGAAACDTARSVDYTGAGTVEFIVSADRPDEFFFMEMNT 293


>gi|222099085|ref|YP_002533653.1| Carbamoyl-phosphate synthase large chain [Thermotoga neapolitana
           DSM 4359]
 gi|254813665|sp|B9KB91|CARB_THENN RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|221571475|gb|ACM22287.1| Carbamoyl-phosphate synthase large chain [Thermotoga neapolitana
           DSM 4359]
          Length = 1099

 Score = 77.5 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 56/289 (19%), Positives = 111/289 (38%), Gaps = 38/289 (13%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI---------DVDRS------------VGLV 45
           G ++E + S   G     AL+ AG++V  +         D + S            +  +
Sbjct: 21  GQAAEFDYS---GTQALKALKSAGYEVIIVNSNSATIMTDPEFSDAVYIEPLTVEFLEEI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   +PD     L G    +  V+     IL+   +    + + +   + D+   K+ + 
Sbjct: 78  IKKERPDALLPTLGGQTALNLAVELAESGILDRYGVQLIGAKLESIKKAEDRELFKKTME 137

Query: 102 SCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G+ V  S LVN  T  +++      P +I+P       G  V   ++ +   + +   
Sbjct: 138 EAGLEVLRSRLVNNLTDALETAREFGYPVIIRPSFTLGGTGGGVAFNEEELREIVTKGLI 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVT-EIAVPKSDFYSYELKYSSLNSTHVLPA 217
            +    +LIE+ V G  E    V+ D + +     ++   D           +S  V P+
Sbjct: 198 ESPVHTVLIEESVIGWKEYELEVVRDGAGNFIVVCSIENLDPMGIHT----GDSITVAPS 253

Query: 218 K-IPLDIYKEVQRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           + +    Y+ ++  A+    AIG   G S   F  DP + ++  +E+N 
Sbjct: 254 QTLTDVEYQRMRDAAYKVIDAIGIETGGSNIQFAVDPKTGRMVVIEMNP 302



 Score = 55.9 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 30/221 (13%), Positives = 83/221 (37%), Gaps = 14/221 (6%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPL 133
            +    +   +  ++ D+ +  +++   G+   P    +     +     +  P +++P 
Sbjct: 645 GVNIIGTSFESIEIAEDREKFAKLLKRIGLRCPPFGTASSVEEALKVAEDLGYPVLVRPS 704

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEI 192
                  + ++   + +   + +++  + G  +LI++++ D IEL   V+ D       I
Sbjct: 705 YVLGGRAMAIVDTPEELERYVREAAIVSPGYPILIDKFLEDAIELDVDVVSDG--KYVWI 762

Query: 193 AVPKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
           A         E    S +S  V  P  +   + +E+++      +A+   GI+       
Sbjct: 763 AGLMEQI--EEAGVHSGDSACVLPPVSLSEKLVEEIEKTVHRLVKALKIVGIANI--QMA 818

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
               +++ +E N +   T     P ++   G    ++   +
Sbjct: 819 VKDEEIYIIEANPRASRT----VPFVSKAIGIPVAKIAAKI 855


>gi|85703218|ref|ZP_01034322.1| methylcrotonyl-CoA carboxylase, alpha subunit [Roseovarius sp. 217]
 gi|85672146|gb|EAQ27003.1| methylcrotonyl-CoA carboxylase, alpha subunit [Roseovarius sp. 217]
          Length = 647

 Score = 77.5 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 41/225 (18%), Positives = 80/225 (35%), Gaps = 23/225 (10%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      +E   + +      A      K  +K ++ + GVPV P    
Sbjct: 77  AIHPGYGFLSENPDFVEAVEAAGLVFIGPSSAAIRAMGLKDAAKALMETAGVPVVPGYHG 136

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
                +    +   I  P +IK + GG   G+ ++++ +     L  +            
Sbjct: 137 ANQDPEHLAGAAEAIGYPVLIKAVAGGGGKGMRLVERPEHFADALESAQGEARTAFGNAA 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           +LIE+Y+     +   V GD    V              L+          PA  +  ++
Sbjct: 197 VLIEKYIQKPRHIEVQVFGDGHKAV------HLFERDCSLQRRHQKVIEEAPAPGMTSEV 250

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR----KVFWLEINV 264
              + + A  A +AIG  G    +F+ D        + +++E+N 
Sbjct: 251 RAAMGQAAVRAAEAIGYAGAGTVEFIVDGSDGLRPDRFWFMEMNT 295


>gi|259417012|ref|ZP_05740932.1| methylcrotonoyl-CoA carboxylase subunit alpha [Silicibacter sp.
           TrichCH4B]
 gi|259348451|gb|EEW60228.1| methylcrotonoyl-CoA carboxylase subunit alpha [Silicibacter sp.
           TrichCH4B]
          Length = 676

 Score = 77.5 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 76/221 (34%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      LE   + +      A     DK+ SK++    GV   P  + 
Sbjct: 77  AVHPGYGFLSENAKFAEALEAAGVAFVGPPKGAIEAMGDKITSKKIAQEAGVSTVPGYMG 136

Query: 114 NRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGD 164
                D      + I  P +IK   GG   G+ +   D+             ++S+   D
Sbjct: 137 LIADADEAVKISNEIGYPVMIKASAGGGGKGMRIAWNDEEAREGFQSSKNEAANSFG-DD 195

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           ++ IE++V     +   V+ DA  +   +   +        K             +  + 
Sbjct: 196 RIFIEKFVTQPRHIEIQVLCDAHGNGVYLGERECSIQRRNQK----VVEEAPSPFLDEET 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +   +    +A+G       +F+ D      ++LE+N 
Sbjct: 252 RRAMGEQSVALAKAVGYASAGTVEFIVDGNKN-FYFLEMNT 291


>gi|258436137|ref|ZP_05689120.1| pyruvate carboxylase [Staphylococcus aureus A9299]
 gi|257848826|gb|EEV72811.1| pyruvate carboxylase [Staphylococcus aureus A9299]
          Length = 1150

 Score = 77.5 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 32/221 (14%), Positives = 74/221 (33%), Gaps = 20/221 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+           I +    +    +  DK++++       +PV P    
Sbjct: 80  AIHPGYGFLSENEQFARRCAEEGIKFIGPHLEHLDMFGDKVKARTTAIKADLPVIPGTDG 139

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
            I       +       P +IK   GG   G+ +++++  +     ++ S         +
Sbjct: 140 PIKSYELAKEFAEEAGFPLMIKATSGGGGKGMRIVREESELEDAFHRAKSEAEKSFGNSE 199

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDI 223
           + IE+Y+D    +    +GD   ++              ++        V P   +   +
Sbjct: 200 VYIERYIDNPKHIEVQAIGDEHGNIV-----HLFERDCSVQRRHQKVVEVAPSVGLSPTL 254

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +   A    + I        +FL      + F++E+N 
Sbjct: 255 RQRICDAAIQLMENIKYVNAGTVEFLV--SGDEFFFIEVNP 293


>gi|229134755|ref|ZP_04263564.1| Pyruvate carboxylase [Bacillus cereus BDRD-ST196]
 gi|228648801|gb|EEL04827.1| Pyruvate carboxylase [Bacillus cereus BDRD-ST196]
          Length = 1148

 Score = 77.5 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 30/243 (12%), Positives = 84/243 (34%), Gaps = 21/243 (8%)

Query: 35  QIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSM 91
            ID    +  ++   K +   + +H  +G   E+       E   I +         +  
Sbjct: 62  PIDAYLDIEGIIEIAKSNHV-DAIHPGYGFLSENIQFAKRCEEEGIIFIGPKSKHLDMFG 120

Query: 92  DKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147
           DK++++       +P+ P     +       +       P +IK   GG   G+ +++  
Sbjct: 121 DKVKARTQAQLAQIPIIPGSDGPVNSIEEVEEFAEKYDYPIIIKASLGGGGRGMRIVRAS 180

Query: 148 QSIPL----DLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSY 202
           + +         ++ +    D++ +E++V+    +   ++ D   +V  +          
Sbjct: 181 EELRESYNRAKSEAKAAFGNDEVYVEKFVEKPKHIEVQILADEEGNVVHLYE-----RDC 235

Query: 203 ELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
            ++        + P   +  D+ + +   A    + +        +FL      + +++E
Sbjct: 236 SVQRRHQKVVEIAPSVSLSDDLRQRICDAAVKLTKNVNYLNAGTVEFLV--KGDEFYFIE 293

Query: 262 INV 264
           +N 
Sbjct: 294 VNP 296


>gi|163941686|ref|YP_001646570.1| pyruvate carboxylase [Bacillus weihenstephanensis KBAB4]
 gi|163863883|gb|ABY44942.1| pyruvate carboxylase [Bacillus weihenstephanensis KBAB4]
          Length = 1148

 Score = 77.5 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 30/243 (12%), Positives = 84/243 (34%), Gaps = 21/243 (8%)

Query: 35  QIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSM 91
            ID    +  ++   K +   + +H  +G   E+       E   I +         +  
Sbjct: 62  PIDAYLDIEGIIEIAKSNHV-DAIHPGYGFLSENIQFAKRCEEEGIIFIGPKSKHLDMFG 120

Query: 92  DKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147
           DK++++       +P+ P     +       +       P +IK   GG   G+ +++  
Sbjct: 121 DKVKARTQAQLAQIPIIPGSDGPVNSIEEVEEFAEKYDYPIIIKASLGGGGRGMRIVRAS 180

Query: 148 QSIPL----DLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSY 202
           + +         ++ +    D++ +E++V+    +   ++ D   +V  +          
Sbjct: 181 EELRESYNRAKSEAKAAFGNDEVYVEKFVEKPKHIEVQILADEEGNVVHLYE-----RDC 235

Query: 203 ELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
            ++        + P   +  D+ + +   A    + +        +FL      + +++E
Sbjct: 236 SVQRRHQKVVEIAPSVSLSDDLRQRICDAAVKLTKNVNYLNAGTVEFLV--KGDEFYFIE 293

Query: 262 INV 264
           +N 
Sbjct: 294 VNP 296


>gi|95929151|ref|ZP_01311895.1| carbamoyl-phosphate synthase, large subunit [Desulfuromonas
           acetoxidans DSM 684]
 gi|95134649|gb|EAT16304.1| carbamoyl-phosphate synthase, large subunit [Desulfuromonas
           acetoxidans DSM 684]
          Length = 1085

 Score = 77.5 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 54/278 (19%), Positives = 103/278 (37%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVDRS------------VGLVLAHLKPDLAFN 56
           SG     AL+D G++V  +         D D +            +  ++   +PD    
Sbjct: 29  SGTQACKALKDEGYEVVLLNSNPATIMTDPDFADRTYVEPVTPAVLAKIIEKERPDALLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G    +  V       L+   +    + + A   + D+   KQ + S GV V  S L
Sbjct: 89  TLGGQTALNTAVAVAKDGTLDKFGVELIGAKLPAIEKAEDRTLFKQAMDSIGVAVPRSGL 148

Query: 113 VNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            + +   M     +  P +I+P       G  +    +      +     +  D++L+E+
Sbjct: 149 AHNYDEAMVVIEEVGFPAIIRPSFTLGGTGGGIAYNREEYEAMAVAGIDASPTDEILVEE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            V G  E    VM D + +V  I   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SVIGWKEYELEVMRDLADNVVIICSIEN----FDAMGVHTGDSITVAPAQTLTDKEYQIL 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P   ++  +E+N 
Sbjct: 265 RDASLKIIREIGVETGGSNIQFGINPKDGRLVVIEMNP 302



 Score = 59.8 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 30/196 (15%), Positives = 73/196 (37%), Gaps = 8/196 (4%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--QHLISPPYV 129
           LE   +P   +   A   + D+ R + ++    +    + L   F         I  P V
Sbjct: 665 LEKAGVPIIGTSPDAIDRAEDRERFQALLHKLDLKQPANGLARSFEEAETIAEQIGYPVV 724

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLD 188
           ++P        + ++   + +   +  +   +    +LI++++D  IE+    + D +  
Sbjct: 725 VRPSYVLGGRAMEIVYGIEQLRNYMKFAVQASPEHPILIDKFLDHAIEIDVDALADGTDV 784

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           V    +   +       +S  ++  + P  +  ++ +EV+R        +G  G+    F
Sbjct: 785 VIGGIMQHIEEAGI---HSGDSACSLPPYSLAEELVEEVRRQTRALALELGVIGLMNIQF 841

Query: 249 LFDPLSRKVFWLEINV 264
                   V+ +E+N 
Sbjct: 842 AV--KDNVVYLIEVNP 855


>gi|85703068|ref|ZP_01034172.1| acetyl-CoA carboxylase, biotin carboxylase [Roseovarius sp. 217]
 gi|85671996|gb|EAQ26853.1| acetyl-CoA carboxylase, biotin carboxylase [Roseovarius sp. 217]
          Length = 453

 Score = 77.5 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/234 (14%), Positives = 70/234 (29%), Gaps = 14/234 (5%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
            ++  V      D  +   +G   E+           + +         L  DK  ++  
Sbjct: 63  DALLHVACATGCDAIYPG-YGFLAENADFAERCAAEGLIFIGPEAQTIRLMGDKAAARAT 121

Query: 100 VSSCGVPVCPSI--LVNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPL--- 152
               GVPV      +V+  T        +  P +IK   GG   G+ + +          
Sbjct: 122 AIKFGVPVVRGSDGVVDDPTQVEHLLDDMGFPVLIKASAGGGGRGMRIARSRSEFAALFS 181

Query: 153 -DLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLN 210
               ++        + +E+++     +   V GD       +            K     
Sbjct: 182 QASREAQQAFGDASVYLERFISNVRHIEVQVFGDGKGQAVHVGERDCTVQRRHQKLL--- 238

Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
                   +       +Q  A      +  RG    +F+FD  +R+ F++E+N 
Sbjct: 239 -EEAPSPILTATERAHIQDSALRLAAGVNYRGAGTVEFIFDADTREYFFIEMNT 291


>gi|323140642|ref|ZP_08075566.1| carbamoyl-phosphate synthase, large subunit [Phascolarctobacterium
           sp. YIT 12067]
 gi|322414906|gb|EFY05701.1| carbamoyl-phosphate synthase, large subunit [Phascolarctobacterium
           sp. YIT 12067]
          Length = 1069

 Score = 77.5 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 46/297 (15%), Positives = 104/297 (35%), Gaps = 43/297 (14%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ------ 69
           AL++ G++   I         D D S  L    L  +   NV+     E  +VQ      
Sbjct: 580 ALKEMGYETIIINNNPETVSTDFDISDKLYFEPLTVEDVLNVIDKEKPEGVIVQFGGQTA 639

Query: 70  ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTMDSQHL 123
                 L    +    S + +   + D+ R  ++++SC +P      V      + + H 
Sbjct: 640 INLAGPLSRAGVKILGSSVDSIDRAEDRERFDELLTSCDIPRPQGHTVFDTEGALVAAHK 699

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           +  P +++P        + ++  D  +   +  +   +    +L++ Y+ G E+    + 
Sbjct: 700 VGYPTMVRPSYVLGGRAMEIVYNDDELRNYMTYAVKASREHPVLVDHYLQGTEVEVDAIC 759

Query: 184 DAS---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIG 239
           D     +      V ++  +S        +S  V P + +   + + +          + 
Sbjct: 760 DGKEVLIPGIMEHVERAGVHS-------GDSIAVYPPRSLSESVIRTIIEYTNKMALGLE 812

Query: 240 CRGISRSDFLFDPLSRKVFWLEIN-----VQPGM---TPVSIFPEMAA-YAGYSFRE 287
            +G+    ++       V+ +E+N       P +   T +S+         G S +E
Sbjct: 813 VKGMINIQYIVR--DEHVYVIEVNPRSSRTVPFLSKITGISMVDVATRCAMGMSLKE 867



 Score = 71.7 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 59/332 (17%), Positives = 123/332 (37%), Gaps = 49/332 (14%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI---------DV------------DRSVGLV 45
           G ++E + +   G     AL++ G +V  I         DV            D  +  +
Sbjct: 21  GQAAEFDYA---GTQACRALKEEGLEVVLINSNPATIMTDVHVADRVYVEPISDEFIEKI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   +PD     L G  G +  +    Q IL+   +    + I A     D+   K+ + 
Sbjct: 78  IKRERPDSLLATLGGQVGLNMAMKLEEQGILDKYNVRLLGTQISAIKRGEDREMFKETME 137

Query: 102 SCGVPVCPSILVNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
               P+  S +V       D    I  P +++P       G  + + ++ +   + +   
Sbjct: 138 KIHQPIPESTIVETIEAACDFGKEIGYPLIVRPAYTLGGTGGGIAENEEELIDIVQKGLG 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
           ++   Q LIE+ + G  E+   V+ DA+ + +T  ++   D           +S  V PA
Sbjct: 198 YSPIGQCLIERSIAGWKEIEYEVIRDAADNCITVCSMENLDPVGVHT----GDSIVVAPA 253

Query: 218 K-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPE 276
           + +     + +++ +    + +G  G        DP S   + +E+N  P ++  S    
Sbjct: 254 QTLSDKEVQLLRQASIDIVRELGVVGGCNVQLALDPYSENYYVIEVN--PRVSRSS--AL 309

Query: 277 MAAYAGYSFRELLLWM--------VEDASCLR 300
            +   GY   ++   +        +E+A   +
Sbjct: 310 ASKATGYPIAKVTSKIAVGYNLDEIENAVTKK 341


>gi|312869651|ref|ZP_07729800.1| phosphoribosylaminoimidazole carboxylase, ATPase subunit
           [Lactobacillus oris PB013-T2-3]
 gi|311094848|gb|EFQ53143.1| phosphoribosylaminoimidazole carboxylase, ATPase subunit
           [Lactobacillus oris PB013-T2-3]
          Length = 374

 Score = 77.5 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 40/207 (19%), Positives = 86/207 (41%), Gaps = 15/207 (7%)

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
           E+  + A+ ++ +  Y   G      + +++R K  +   G+   P   V   T   + +
Sbjct: 78  ENVDLNALKDVADQVYIPQGTHLLYTTKNRIREKTFLRDAGLQTAPFRAVKDATDLKRAV 137

Query: 124 --ISPPYVIKPLKGG-SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTC 179
             +  P V+K  +GG    G  V+  D     DL + +        ++E +V   +E + 
Sbjct: 138 AELGYPCVLKTCEGGYDGHGQEVLHSD----ADLAKCTGILSTRDAILEGWVPFELECSV 193

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
            V  + + +VT   V ++  +   L         ++PA+I  ++ ++ Q++A     AI 
Sbjct: 194 MVGRNENGEVTVFPVAENIHHDEIL------HISIIPARISPELQEKAQQMAVQIAHAID 247

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQP 266
            RGI   +        +++  E+  +P
Sbjct: 248 LRGILGVEMFV-GRDGEIYINELAPRP 273


>gi|296133222|ref|YP_003640469.1| acetyl-CoA carboxylase, biotin carboxylase [Thermincola sp. JR]
 gi|296031800|gb|ADG82568.1| acetyl-CoA carboxylase, biotin carboxylase [Thermincola potens JR]
          Length = 449

 Score = 77.5 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 77/220 (35%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     I E   I +    I A      K  +++ +   GVPV P    
Sbjct: 77  AIHPGYGFLAENAEFAEICESCGIKFIGPSISALENMGAKAVARETMIKAGVPVVPGTEG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
            I      +     I  P +IK   GG   G+ + +    +   +  + +         +
Sbjct: 137 VITDKEEAVRIAQEIGYPVIIKASAGGGGKGMRIAQSKNDLIKAIQTAQAEAEAAFGNAE 196

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+YV+    +   ++ D   +   +            K           + +  ++ 
Sbjct: 197 VYIEKYVEEPRHIEFQILADNYGNTVYLGERDCSIQRRNQKLL----EEAPSSALTPELR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K++  +A  A +A+        +FL D      +++E+N 
Sbjct: 253 KKMGEMAVRAAKAVNYSNAGTVEFLLDK-DNNFYFIEMNT 291


>gi|228909773|ref|ZP_04073596.1| Pyruvate carboxylase [Bacillus thuringiensis IBL 200]
 gi|228850062|gb|EEM94893.1| Pyruvate carboxylase [Bacillus thuringiensis IBL 200]
          Length = 1148

 Score = 77.5 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 31/243 (12%), Positives = 83/243 (34%), Gaps = 21/243 (8%)

Query: 35  QIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSM 91
            ID    +  ++   K +   + +H  +G   E+       E   I +         +  
Sbjct: 62  PIDAYLDIEGIIEIAKSNHV-DAIHPGYGFLSENIQFAKRCEEEGIIFIGPKSKHLDMFG 120

Query: 92  DKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147
           DK++++       +PV P     +               P +IK   GG   G+ +++  
Sbjct: 121 DKVKARTQAQLAQIPVIPGSDGPVDSLEEVEKFAEKYDYPIIIKASLGGGGRGMRIVRTS 180

Query: 148 QSIPL----DLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSY 202
           + +         ++ +    D++ +E++V+    +   ++ D   +V  +          
Sbjct: 181 EELGESYNRAKSEAKAAFGNDEVYVEKFVEKPKHIEVQILADEEGNVVHLYE-----RDC 235

Query: 203 ELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
            ++        + P   +  D+ + +   A    + +        +FL      + +++E
Sbjct: 236 SVQRRHQKVVEIAPSVSLSDDLRQRICDAAVKLTKNVNYLNAGTVEFLV--KDDEFYFIE 293

Query: 262 INV 264
           +N 
Sbjct: 294 VNP 296


>gi|228992683|ref|ZP_04152609.1| Pyruvate carboxylase [Bacillus pseudomycoides DSM 12442]
 gi|228767015|gb|EEM15652.1| Pyruvate carboxylase [Bacillus pseudomycoides DSM 12442]
          Length = 1148

 Score = 77.5 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 32/243 (13%), Positives = 81/243 (33%), Gaps = 21/243 (8%)

Query: 35  QIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSM 91
            ID    +  ++   K +   + +H  +G   E+       E   I +         +  
Sbjct: 62  PIDAYLDIEGIIEIAKSNHV-DAIHPGYGFLSENIQFARRCEEEGIIFIGPKSKHLDMFG 120

Query: 92  DKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147
           DK++++       +PV P     I       +       P +IK   GG   G+ +++  
Sbjct: 121 DKVKARTQAQLANIPVIPGSDGPINSLEEVEEFAKKYDYPIIIKASLGGGGRGMRIVRSG 180

Query: 148 QSIPL----DLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSY 202
             +         ++ +    D++ +E++V+    +   ++ D   +V  +          
Sbjct: 181 DELKESYDRAKSEAKAAFGNDEVYVEKFVEKPKHIEVQILADEEGNVVHLYE-----RDC 235

Query: 203 ELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
            ++        + P   +  D+   +   A    + +        +FL        +++E
Sbjct: 236 SVQRRHQKVVEIAPSVSLSDDLRHRICEAAVQLTKNVNYLNAGTVEFLV--KGDDFYFIE 293

Query: 262 INV 264
           +N 
Sbjct: 294 VNP 296


>gi|229013152|ref|ZP_04170296.1| Pyruvate carboxylase [Bacillus mycoides DSM 2048]
 gi|228748102|gb|EEL97963.1| Pyruvate carboxylase [Bacillus mycoides DSM 2048]
          Length = 1148

 Score = 77.5 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 30/243 (12%), Positives = 84/243 (34%), Gaps = 21/243 (8%)

Query: 35  QIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSM 91
            ID    +  ++   K +   + +H  +G   E+       E   I +         +  
Sbjct: 62  PIDAYLDIEGIIEIAKSNHV-DAIHPGYGFLSENIQFAKRCEEEGIIFIGPKSKHLDMFG 120

Query: 92  DKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147
           DK++++       +P+ P     +       +       P +IK   GG   G+ +++  
Sbjct: 121 DKVKARTQAQLAQIPIIPGSDGPVNSIEEVEEFAEKYDYPIIIKASLGGGGRGMRIVRAS 180

Query: 148 QSIPL----DLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSY 202
           + +         ++ +    D++ +E++V+    +   ++ D   +V  +          
Sbjct: 181 EELRESYNRAKSEAKAAFGNDEVYVEKFVEKPKHIEVQILADEEGNVVHLYE-----RDC 235

Query: 203 ELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
            ++        + P   +  D+ + +   A    + +        +FL      + +++E
Sbjct: 236 SVQRRHQKVVEIAPSVSLSDDLRQRICDAAVKLTKNVNYLNAGTVEFLV--KGDEFYFIE 293

Query: 262 INV 264
           +N 
Sbjct: 294 VNP 296


>gi|218899103|ref|YP_002447514.1| pyruvate carboxylase [Bacillus cereus G9842]
 gi|218545677|gb|ACK98071.1| pyruvate carboxylase [Bacillus cereus G9842]
          Length = 1148

 Score = 77.5 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 31/243 (12%), Positives = 83/243 (34%), Gaps = 21/243 (8%)

Query: 35  QIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSM 91
            ID    +  ++   K +   + +H  +G   E+       E   I +         +  
Sbjct: 62  PIDAYLDIEGIIEIAKSNHV-DAIHPGYGFLSENIQFAKRCEEEGIIFIGPKSKHLDMFG 120

Query: 92  DKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147
           DK++++       +PV P     +               P +IK   GG   G+ +++  
Sbjct: 121 DKVKARTQAQLAQIPVIPGSDGPVDSLEEVEKFAEKYDYPIIIKASLGGGGRGMRIVRTS 180

Query: 148 QSIPL----DLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSY 202
           + +         ++ +    D++ +E++V+    +   ++ D   +V  +          
Sbjct: 181 EELGESYNRAKSEAKAAFGNDEVYVEKFVEKPKHIEVQILADEEGNVVHLYE-----RDC 235

Query: 203 ELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
            ++        + P   +  D+ + +   A    + +        +FL      + +++E
Sbjct: 236 SVQRRHQKVVEIAPSVSLSDDLRQRICDAAVKLTKNVNYLNAGTVEFLV--KDDEFYFIE 293

Query: 262 INV 264
           +N 
Sbjct: 294 VNP 296


>gi|308184823|ref|YP_003928956.1| biotin carboxylase [Helicobacter pylori SJM180]
 gi|308060743|gb|ADO02639.1| biotin carboxylase [Helicobacter pylori SJM180]
          Length = 455

 Score = 77.5 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 37/225 (16%), Positives = 77/225 (34%), Gaps = 14/225 (6%)

Query: 49  LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
            + D  F   +G   E+     I     + +        AL  DK ++K V+   G+PV 
Sbjct: 84  FEADAIFPG-YGFLSENQNFVEICSHHSLEFIGPSAKVMALMSDKAKAKSVMKEAGMPVI 142

Query: 109 PS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSW 160
                 +   +   +    I  P +IK   GG   G+ V+     +         ++ S 
Sbjct: 143 EGSDGLLKSYQEAEEIADKIGYPVIIKAAAGGGGRGMRVVGDKSKLKNLYLAAETEALSA 202

Query: 161 NHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI 219
                + +E+++     +   ++ D   +V  +          + K             +
Sbjct: 203 FGDGSVYLEKFINKPKHIEVQILADKHGNVIHVGERDCSVQRRQQK----LIEETPAVVL 258

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              + + +   A  A + IG  G    +FL D   +  +++E+N 
Sbjct: 259 EESVRERLLETAIKAAKYIGYVGAGTFEFLLDSNMKDFYFMEMNT 303


>gi|228922698|ref|ZP_04085997.1| Pyruvate carboxylase [Bacillus thuringiensis serovar huazhongensis
           BGSC 4BD1]
 gi|228836972|gb|EEM82314.1| Pyruvate carboxylase [Bacillus thuringiensis serovar huazhongensis
           BGSC 4BD1]
          Length = 1148

 Score = 77.5 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 31/243 (12%), Positives = 83/243 (34%), Gaps = 21/243 (8%)

Query: 35  QIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSM 91
            ID    +  ++   K +   + +H  +G   E+       E   I +         +  
Sbjct: 62  PIDAYLDIEGIIEIAKSNHV-DAIHPGYGFLSENIQFAKRCEEEGIIFIGPKSKHLDMFG 120

Query: 92  DKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147
           DK++++       +PV P     +               P +IK   GG   G+ +++  
Sbjct: 121 DKVKARTQAQLAQIPVIPGSDGPVDSLEEVEKFAEKYDYPIIIKASLGGGGRGMRIVRTS 180

Query: 148 QSIPL----DLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSY 202
           + +         ++ +    D++ +E++V+    +   ++ D   +V  +          
Sbjct: 181 EELGESYNRAKSEAKAAFGNDEVYVEKFVEKPKHIEVQILADEEGNVVHLYE-----RDC 235

Query: 203 ELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
            ++        + P   +  D+ + +   A    + +        +FL      + +++E
Sbjct: 236 SVQRRHQKVVEIAPSVSLSDDLRQRICDAAVKLTKNVNYLNAGTVEFLV--KDDEFYFIE 293

Query: 262 INV 264
           +N 
Sbjct: 294 VNP 296


>gi|228998727|ref|ZP_04158314.1| Pyruvate carboxylase [Bacillus mycoides Rock3-17]
 gi|229006229|ref|ZP_04163915.1| Pyruvate carboxylase [Bacillus mycoides Rock1-4]
 gi|228755070|gb|EEM04429.1| Pyruvate carboxylase [Bacillus mycoides Rock1-4]
 gi|228761195|gb|EEM10154.1| Pyruvate carboxylase [Bacillus mycoides Rock3-17]
          Length = 1148

 Score = 77.5 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 32/243 (13%), Positives = 81/243 (33%), Gaps = 21/243 (8%)

Query: 35  QIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSM 91
            ID    +  ++   K +   + +H  +G   E+       E   I +         +  
Sbjct: 62  PIDAYLDIEGIIEIAKSNHV-DAIHPGYGFLSENIQFARRCEEEGIIFIGPKSKHLDMFG 120

Query: 92  DKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147
           DK++++       +PV P     I       +       P +IK   GG   G+ +++  
Sbjct: 121 DKVKARTQAQLANIPVIPGSDGPINSLEEVEEFAKKYDYPIIIKASLGGGGRGMRIVRSG 180

Query: 148 QSIPL----DLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSY 202
             +         ++ +    D++ +E++V+    +   ++ D   +V  +          
Sbjct: 181 DELKESYDRAKSEAKAAFGNDEVYVEKFVEKPKHIEVQILADEEGNVVHLYE-----RDC 235

Query: 203 ELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
            ++        + P   +  D+   +   A    + +        +FL        +++E
Sbjct: 236 SVQRRHQKVVEIAPSVSLSDDLRHRICEAAVQLTKNVNYLNAGTVEFLV--KGDDFYFIE 293

Query: 262 INV 264
           +N 
Sbjct: 294 VNP 296


>gi|86157078|ref|YP_463863.1| acetyl-CoA carboxylase, biotin carboxylase [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85773589|gb|ABC80426.1| acetyl-CoA carboxylase, biotin carboxylase [Anaeromyxobacter
           dehalogenans 2CP-C]
          Length = 460

 Score = 77.5 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 83/220 (37%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            LH  +G   E+    A++E + + +         L  +K+ +++     G+P+ P    
Sbjct: 77  ALHPGYGFLSENAEFAAMVEKMGLKFIGPRPEMIRLMGNKVAAREAAEQAGLPLLPGARG 136

Query: 112 -LVNRFTMDS-QHLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGDQ 165
            L +    +     +  P ++K   GG   G+ + +    I         ++ +      
Sbjct: 137 KLADAEEAERIAEQVGYPVILKAAAGGGGRGMKICRDRSQIRQLFETASNEALAAFGDGS 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+YV+    +   ++ D   ++  +   +        K             +  ++ 
Sbjct: 197 MYLERYVEMPRHIELQIVADEHGNIIHLGERECSVQRRHQK----LIEESPSPAVTPELR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +E+  +A  A + IG   +   +FL D   R  +++E+N 
Sbjct: 253 REMGEVALKAMRRIGYNNVGTIEFLMDEKGR-YYFMEMNT 291


>gi|228941109|ref|ZP_04103665.1| Pyruvate carboxylase [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|228974040|ref|ZP_04134613.1| Pyruvate carboxylase [Bacillus thuringiensis serovar thuringiensis
           str. T01001]
 gi|228980632|ref|ZP_04140940.1| Pyruvate carboxylase [Bacillus thuringiensis Bt407]
 gi|228779100|gb|EEM27359.1| Pyruvate carboxylase [Bacillus thuringiensis Bt407]
 gi|228785676|gb|EEM33682.1| Pyruvate carboxylase [Bacillus thuringiensis serovar thuringiensis
           str. T01001]
 gi|228818562|gb|EEM64631.1| Pyruvate carboxylase [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|326941720|gb|AEA17616.1| pyruvate carboxylase [Bacillus thuringiensis serovar chinensis
           CT-43]
          Length = 1148

 Score = 77.5 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 31/243 (12%), Positives = 83/243 (34%), Gaps = 21/243 (8%)

Query: 35  QIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSM 91
            ID    +  ++   K +   + +H  +G   E+       E   I +         +  
Sbjct: 62  PIDAYLDIEGIIEIAKSNHV-DAIHPGYGFLSENIQFAKRCEEEGIIFIGPKSKHLDMFG 120

Query: 92  DKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147
           DK++++       +PV P     +               P +IK   GG   G+ +++  
Sbjct: 121 DKVKARTQAQLAQIPVIPGSDGPVDSLEEVEKFAEKYDYPIIIKASLGGGGRGMRIVRTS 180

Query: 148 QSIPL----DLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSY 202
           + +         ++ +    D++ +E++V+    +   ++ D   +V  +          
Sbjct: 181 EELGESYNRAKSEAKAAFGNDEVYVEKFVEKPKHIEVQILADEEGNVVHLYE-----RDC 235

Query: 203 ELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
            ++        + P   +  D+ + +   A    + +        +FL      + +++E
Sbjct: 236 SVQRRHQKVVEIAPSVSLSDDLRQRICDAAVKLTKNVNYLNAGTVEFLV--KDDEFYFIE 293

Query: 262 INV 264
           +N 
Sbjct: 294 VNP 296


>gi|77459881|ref|YP_349388.1| 3-methylcrotonoyl-CoA carboxylase, alpha subunit [Pseudomonas
           fluorescens Pf0-1]
 gi|77383884|gb|ABA75397.1| biotin carboxylase subunit of acetyl-CoA carboxylase [Pseudomonas
           fluorescens Pf0-1]
          Length = 649

 Score = 77.5 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 79/220 (35%), Gaps = 19/220 (8%)

Query: 58  LHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
           +H  +G   E+      +E   + +      A      K  +K ++ + GVP+ P     
Sbjct: 82  IHPGYGFLSENAGFARAIEAAGLIFLGPPASAIDAMGSKSAAKSLMETAGVPLVPGYHGE 141

Query: 115 RFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQL 166
              +D    +   I  P ++K   GG   G+ V++    +   L  +           ++
Sbjct: 142 AQDLDTFRDACERIGYPVLLKATAGGGGKGMKVVEDVSQLGEALASAQREAQSSFGDSRM 201

Query: 167 LIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIY 224
           L+E+Y +    +   V  D   +   +            K          PA  +  ++ 
Sbjct: 202 LVEKYLLKPRHVEIQVFADQHGNCLYLNERDCSIQRRHQK-----VVEEAPAPGLSPELR 256

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +   A  + QAIG  G    +FL D    + F++E+N 
Sbjct: 257 RAMGEAAVRSAQAIGYVGAGTVEFLLDAR-GEFFFMEMNT 295


>gi|313205940|ref|YP_004045117.1| carbamoyl-phosphate synthase large subunit [Riemerella
           anatipestifer DSM 15868]
 gi|312445256|gb|ADQ81611.1| carbamoyl-phosphate synthase large subunit [Riemerella
           anatipestifer DSM 15868]
 gi|315022253|gb|EFT35281.1| Carbamoyl-phosphate synthase large chain [Riemerella anatipestifer
           RA-YM]
 gi|325336619|gb|ADZ12893.1| Carbamoylphosphate synthase large subunit (split gene in MJ)
           [Riemerella anatipestifer RA-GD]
          Length = 1060

 Score = 77.5 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 53/286 (18%), Positives = 109/286 (38%), Gaps = 33/286 (11%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI---------DVD------------RSVGLV 45
           G ++E + S   G     +L++ G++V  I         DV+              V  +
Sbjct: 20  GQAAEFDYS---GTQACLSLKEEGYRVILINSNPATIMTDVEIADKVYIEPISLEFVSQI 76

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   +PD     L G  G +  V+     ILE  ++    + + A   + D+   ++++ 
Sbjct: 77  IRKERPDALLPTLGGQTGLNMAVELEKSGILEECKVEVLGTKLSAINQAEDRDLFRELMR 136

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G PV  S +VN     ++  + I  P +++P       G  +   +  +   +     
Sbjct: 137 ELGEPVPESDIVNTVEQALNFANTIGYPVIVRPAFTMGGTGGGIASDETELKEIVANGLK 196

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
           ++   Q LIE+ + G  E+   VM DA+ +   I V   +       ++  +        
Sbjct: 197 YSPVTQCLIEKSIAGFKEIEYEVMRDANDNA--IVVCNMENIDPVGVHTGDSIVVAPSQT 254

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +    Y+ ++  +    +A+G  G        DP S   + +E+N 
Sbjct: 255 LSDREYQLLRNASLKIIRALGIEGGCNVQLALDPHSFNYYIIEVNP 300



 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 27/214 (12%), Positives = 76/214 (35%), Gaps = 13/214 (6%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC--PSILVNRFTMDSQHLISPPYV 129
           L    +    + +     + ++ + ++ +   G+P     +       +   + I  P +
Sbjct: 647 LSAHGVKILGTSLEDLDRAENRDKFEKALQELGIPQPLGKTSTSKEEAIAIANEIGYPVL 706

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           ++P        + ++  +Q +   +  +   +    +LI++YV G E+    + D    V
Sbjct: 707 VRPSYVLGGRAMEIVYTEQELTHYMEHAVDASPEHPVLIDRYVTGKEVEVDAISDGETVV 766

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               +   +           +S  V P   +      +++       + +   G+    +
Sbjct: 767 IPGIMEHIERAGVHS----GDSIAVYPPQNLTEKQIHDLEDYTIRLAKGLNVVGLMNIQY 822

Query: 249 LFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277
           + D  S +VF +E+N       P ++ ++  P  
Sbjct: 823 VID-QSGEVFVIEVNPRSSRTVPFLSKITDVPMA 855


>gi|56697387|ref|YP_167755.1| carbamoyl-phosphate synthase, putative [Ruegeria pomeroyi DSS-3]
 gi|56679124|gb|AAV95790.1| carbamoyl-phosphate synthase, putative [Ruegeria pomeroyi DSS-3]
          Length = 456

 Score = 77.5 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 31/201 (15%), Positives = 64/201 (31%), Gaps = 18/201 (8%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-----ILVNRFTMDSQHLISPPYVI 130
            + +        A   DK R++ +    GVPV P              ++   +  P ++
Sbjct: 98  GLTWIGPAPETIADMGDKGRARALAIKAGVPVLPGSDSFAEGALDGVEEAGATVGFPLLV 157

Query: 131 KPLKGGSSLGIIVIKKDQSIPL-----DLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGD 184
           K   GG  +G+  +     +           + S+     + +E+++     +   V G 
Sbjct: 158 KATAGGGGIGMQRVDDPAKLRKIAERTQSAAARSFG-DGSVFLERFIARARHIEIQVFGF 216

Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGI 243
                              L+          PA  +   I   +  +A     A+   G 
Sbjct: 217 GDGRAV-----HLHERDCSLQRRFQKVVEESPAPGLDRAIVARMGEVACALASAVNYSGA 271

Query: 244 SRSDFLFDPLSRKVFWLEINV 264
              +F+ D  + + F+LE+N 
Sbjct: 272 GTVEFVMDADTGEFFFLEMNT 292


>gi|320324143|gb|EFW80224.1| hypothetical protein PsgB076_13812 [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320328709|gb|EFW84709.1| hypothetical protein PsgRace4_17808 [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 415

 Score = 77.5 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 63/314 (20%), Positives = 111/314 (35%), Gaps = 51/314 (16%)

Query: 17  SSGK--ACASALEDAGFKVSQI-DVDRSVGLVLAHL----------KPDLAFNVL----- 58
            S K      A + AG ++  + D   S    L  +          +P +A         
Sbjct: 10  RSAKLSFVFEAAQAAGIELVLVYDTTESAPAQLPAVTSTWQLPVFDEPQVALEAFAAGVE 69

Query: 59  -HGNFG-----EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
             G  G     E+ ++   L    I         +AL+ DK   +Q  ++ G+       
Sbjct: 70  ERGIGGVMTVREEAIIWTALAAKRIGTPGIKPELAALTRDKYLMRQAFAAAGLRSPGFCY 129

Query: 113 V-NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP-----------LDLLQSSSW 160
           + N   +   H +  P VIKPL G SS G+++ K  + +P            DL +    
Sbjct: 130 IDNPEDLSQAHALGFPLVIKPLSGWSSTGVMLAKTVEELPNLVNAVWDVQSKDLARFYDQ 189

Query: 161 NHGDQLLIEQYVDGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216
           +    L++EQY+ G E          G   L V +   P+  ++          + +   
Sbjct: 190 DKAVGLVVEQYLPGKEFVVECFVDIEGVHVLAVGDKGQPEGPWF--------EETIYRQR 241

Query: 217 AKIPLDIYKEVQRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275
             I   +   +   A    +A+G   G +  +   D   ++ + +EI  + G + VS F 
Sbjct: 242 RDIHDPLIVSLCDAARAGVKALGISIGAAHVELRLDAQ-QQPYVIEIGARIGGSGVSHFV 300

Query: 276 EMAAYAGYSFRELL 289
                 G SF +L 
Sbjct: 301 VE-QSTGVSFAKLC 313


>gi|119774496|ref|YP_927236.1| 3-methylcrotonyl-CoA carboxylase subunit alpha [Shewanella
           amazonensis SB2B]
 gi|119766996|gb|ABL99566.1| 3-methylcrotonoyl-CoA carboxylase, alpha subunit [Shewanella
           amazonensis SB2B]
          Length = 673

 Score = 77.5 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 83/221 (37%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       E   I +   G  A      K  +K ++   GVP+ P    
Sbjct: 77  AIHPGYGFLSENAAFARACEASGIAFVGPGSDAIDAMGSKSAAKLIMEKAGVPLVPGYHG 136

Query: 114 NRFT----MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
           +  +    +     I  P +IK   GG   G+ +++ +  +   +  +          D+
Sbjct: 137 DDQSDATLLAEAKKIGYPLLIKAAYGGGGKGMRIVESESELKAAIDSARREAASSFGNDK 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           LL+E+Y+     +   V  D+  +   ++           K          PA  +P  +
Sbjct: 197 LLMERYLRQPRHVEVQVFADSQGNCVYLSDRDCSIQRRHQK-----VVEEAPAPGLPDSL 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            K++   A  A +AI  RG    +FL D +    F++E+N 
Sbjct: 252 RKQMGEAAVAAAKAIDYRGAGTVEFLLD-VDMSFFFMEMNT 291


>gi|30262539|ref|NP_844916.1| acetyl-CoA carboxylase biotin carboxylase subunit [Bacillus
           anthracis str. Ames]
 gi|47527837|ref|YP_019186.1| acetyl-CoA carboxylase biotin carboxylase subunit [Bacillus
           anthracis str. 'Ames Ancestor']
 gi|49185379|ref|YP_028631.1| acetyl-CoA carboxylase biotin carboxylase subunit [Bacillus
           anthracis str. Sterne]
 gi|65319846|ref|ZP_00392805.1| COG0439: Biotin carboxylase [Bacillus anthracis str. A2012]
 gi|165868978|ref|ZP_02213638.1| putative acetyl-CoA carboxylase, biotin carboxylase [Bacillus
           anthracis str. A0488]
 gi|167632393|ref|ZP_02390720.1| putative acetyl-CoA carboxylase, biotin carboxylase [Bacillus
           anthracis str. A0442]
 gi|167637712|ref|ZP_02395991.1| putative acetyl-CoA carboxylase, biotin carboxylase [Bacillus
           anthracis str. A0193]
 gi|170685161|ref|ZP_02876385.1| putative acetyl-CoA carboxylase, biotin carboxylase [Bacillus
           anthracis str. A0465]
 gi|177649396|ref|ZP_02932398.1| putative acetyl-CoA carboxylase, biotin carboxylase [Bacillus
           anthracis str. A0174]
 gi|190565541|ref|ZP_03018461.1| putative acetyl-CoA carboxylase, biotin carboxylase [Bacillus
           anthracis Tsiankovskii-I]
 gi|227814642|ref|YP_002814651.1| putative acetyl-CoA carboxylase, biotin carboxylase [Bacillus
           anthracis str. CDC 684]
 gi|229604333|ref|YP_002866862.1| putative acetyl-CoA carboxylase, biotin carboxylase [Bacillus
           anthracis str. A0248]
 gi|254685115|ref|ZP_05148975.1| acetyl-CoA carboxylase biotin carboxylase subunit [Bacillus
           anthracis str. CNEVA-9066]
 gi|254722524|ref|ZP_05184312.1| acetyl-CoA carboxylase biotin carboxylase subunit [Bacillus
           anthracis str. A1055]
 gi|254737566|ref|ZP_05195269.1| acetyl-CoA carboxylase biotin carboxylase subunit [Bacillus
           anthracis str. Western North America USA6153]
 gi|254743250|ref|ZP_05200935.1| acetyl-CoA carboxylase biotin carboxylase subunit [Bacillus
           anthracis str. Kruger B]
 gi|254751881|ref|ZP_05203918.1| acetyl-CoA carboxylase biotin carboxylase subunit [Bacillus
           anthracis str. Vollum]
 gi|254760401|ref|ZP_05212425.1| acetyl-CoA carboxylase biotin carboxylase subunit [Bacillus
           anthracis str. Australia 94]
 gi|30257171|gb|AAP26402.1| putative acetyl-CoA carboxylase, biotin carboxylase [Bacillus
           anthracis str. Ames]
 gi|47502985|gb|AAT31661.1| putative acetyl-CoA carboxylase, biotin carboxylase [Bacillus
           anthracis str. 'Ames Ancestor']
 gi|49179306|gb|AAT54682.1| acetyl-CoA carboxylase, biotin carboxylase, putative [Bacillus
           anthracis str. Sterne]
 gi|164715704|gb|EDR21221.1| putative acetyl-CoA carboxylase, biotin carboxylase [Bacillus
           anthracis str. A0488]
 gi|167514261|gb|EDR89628.1| putative acetyl-CoA carboxylase, biotin carboxylase [Bacillus
           anthracis str. A0193]
 gi|167532691|gb|EDR95327.1| putative acetyl-CoA carboxylase, biotin carboxylase [Bacillus
           anthracis str. A0442]
 gi|170670521|gb|EDT21260.1| putative acetyl-CoA carboxylase, biotin carboxylase [Bacillus
           anthracis str. A0465]
 gi|172084470|gb|EDT69528.1| putative acetyl-CoA carboxylase, biotin carboxylase [Bacillus
           anthracis str. A0174]
 gi|190563568|gb|EDV17533.1| putative acetyl-CoA carboxylase, biotin carboxylase [Bacillus
           anthracis Tsiankovskii-I]
 gi|227004962|gb|ACP14705.1| putative acetyl-CoA carboxylase, biotin carboxylase [Bacillus
           anthracis str. CDC 684]
 gi|229268741|gb|ACQ50378.1| putative acetyl-CoA carboxylase, biotin carboxylase [Bacillus
           anthracis str. A0248]
          Length = 445

 Score = 77.5 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 80/220 (36%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       +   I +             K+ S+  + +  VPV P I  
Sbjct: 77  AIHPGYGLLSENPSFPVRCKEEGIVFIGPSEEIITKMGSKIESRIAMQAADVPVVPGITT 136

Query: 114 N----RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
           N       ++    I  P ++K   GG  +G+ +++ +Q++         ++ ++    +
Sbjct: 137 NIETAEEAIEIAKQIGYPLMLKASAGGGGIGMQLMETEQTLTKAFESNKTRAQNFFGNGE 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+Y+ D   +   ++ D   +   +   +        K             +     
Sbjct: 197 MYLERYIADAHHIEIQLLADTHGNTVYLWERECSVQRRNQK----VIEEAPSPFLDEGTR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K +  +A  A +A+G       +FL D      ++LE+N 
Sbjct: 253 KAMGEIAVQAAKALGYTNAGTVEFLVDEQKN-FYFLEMNT 291


>gi|242242420|ref|ZP_04796865.1| pyruvate carboxylase [Staphylococcus epidermidis W23144]
 gi|242234127|gb|EES36439.1| pyruvate carboxylase [Staphylococcus epidermidis W23144]
          Length = 1153

 Score = 77.5 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 32/221 (14%), Positives = 77/221 (34%), Gaps = 20/221 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+           I +    +    +  DK++++    +  +PV P    
Sbjct: 84  AIHPGYGFLSENEQFARRCADEGIKFIGPHLEHLDMFGDKVKARTTAINANLPVIPGTDG 143

Query: 114 NRFTMDSQHLI----SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
              + ++          P +IK   GG   G+ ++++   +     ++ S         +
Sbjct: 144 PIESFEAAEQFANEAGYPLMIKATSGGGGKGMRIVRESSELEDAFHRAKSEAEKSFGNSE 203

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDI 223
           + IE+Y+D    +   V+GD   ++  +           ++        V P   +   +
Sbjct: 204 VYIERYIDNPKHIEVQVIGDEFGNIIHLYE-----RDCSVQRRHQKVVEVAPSVGLSNKL 258

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +   A    + I        +FL      + F++E+N 
Sbjct: 259 RERICDAAIQLMKNIKYVNAGTVEFLV--SGDEFFFIEVNP 297


>gi|255530040|ref|YP_003090412.1| carbamoyl phosphate synthase large subunit [Pedobacter heparinus
           DSM 2366]
 gi|255343024|gb|ACU02350.1| carbamoyl-phosphate synthase, large subunit [Pedobacter heparinus
           DSM 2366]
          Length = 938

 Score = 77.5 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 55/278 (19%), Positives = 107/278 (38%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG   A +L++ G +VS I+ +                      S+  +L   K D    
Sbjct: 29  SGSQAALSLKEEGIEVSIINSNPATIMTDKVIGDHVYLWPLTVDSIEQILQERKIDAVLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +    + I E   +      + A   + ++   +Q++   GV V  S +
Sbjct: 89  TMGGQTALNLCIEASERGIWEKYGVKVIGVDVAAIEKTENREAFRQLMVDIGVGVATSKI 148

Query: 113 VNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            N F    ++   I  P VI+P       G   + K +     L +    +   ++L+EQ
Sbjct: 149 ANSFLEGKEAAQEIGYPLVIRPSYTLGGYGGGFVHKKEEFDQALKRGLEASPTHEVLVEQ 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            V G  E    ++ D++ +V  I   ++    ++       +S  V PA  +    Y+++
Sbjct: 209 AVLGWKEYELELLRDSNDNVIIICSIEN----FDPMGIHTGDSITVAPAMTLSDRCYQDM 264

Query: 228 QRLAFLAHQAIG-CRGISRSDFLFDPLSRKVFWLEINV 264
           +  A    +AIG   G     F  +P + ++  +EIN 
Sbjct: 265 RNQAIRMMRAIGNFAGGCNVQFSVNPDNDEIIAIEINP 302



 Score = 62.1 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/214 (12%), Positives = 75/214 (35%), Gaps = 14/214 (6%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYVIKPL 133
            I    +      ++ D+ R   ++    +P     +           + +  P +++P 
Sbjct: 655 GIKIIGTSYNDMDVAEDRGRFSDLLKELDIPYPKYGVAENAEEAIVVANEVGYPVLVRPS 714

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC--GVMGDASLDVTE 191
                 G+ ++  D+ +   +++      G+++LI+ ++D  E T    +     + +  
Sbjct: 715 YVLGGQGMSIVINDEDLEKAVVKLLGDLPGNRVLIDHFLDRAEETESDSISDGEDVHIVG 774

Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
           +         +    S  +S  + P  +   +  +++  +    +A+   G+    F   
Sbjct: 775 LMEHIEPAGIH----SGDSSAVLPPFSLSEKVMNDMETYSKKIARALNVIGLLNIQFAV- 829

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285
               KV+ +E N +   T     P +A      +
Sbjct: 830 -KDEKVYVIEANPRASRT----VPFIAKAYDVPY 858


>gi|213156422|ref|YP_002318842.1| urea amidolyase [Acinetobacter baumannii AB0057]
 gi|213055582|gb|ACJ40484.1| urea amidolyase [Acinetobacter baumannii AB0057]
          Length = 769

 Score = 77.5 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 41/257 (15%), Positives = 88/257 (34%), Gaps = 32/257 (12%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     + E   I +             K  ++++     VP+ P    
Sbjct: 77  AIHPGYGFLSENAEFCDLCESQGIAFIGPTSSQMLDFGLKHTARELAIKSNVPLLPGSSL 136

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN----HGDQL 166
           +      +     I  P ++K   GG  +G+ ++  +  +       S           L
Sbjct: 137 LANEAEALAEAARIGYPVMLKSTAGGGGIGMRLVWNETELKDAFQTVSYLAQVNFKDAGL 196

Query: 167 LIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIY 224
            +E++V     +   + GD    V  +           ++  +       PA  +     
Sbjct: 197 YLEKFVQHARHIEVQIFGDGQGQVLALGE-----RDCSVQRRNQKVIEETPAPHLNEQQR 251

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
             +Q++A    Q++  R     +F+ D  +++ ++LE+N             +    G +
Sbjct: 252 DYLQKVAIQLMQSVNYRSAGTVEFVMDTETQEFYFLEVNT-----------RLQVEHGVT 300

Query: 285 ---FR-ELLLWMVEDAS 297
              F  +L+ WMV  AS
Sbjct: 301 EQVFGVDLVEWMVTLAS 317


>gi|182416566|ref|ZP_02947990.1| pyruvate carboxylase [Clostridium butyricum 5521]
 gi|237668192|ref|ZP_04528176.1| pyruvate carboxylase [Clostridium butyricum E4 str. BoNT E BL5262]
 gi|182379563|gb|EDT77046.1| pyruvate carboxylase [Clostridium butyricum 5521]
 gi|237656540|gb|EEP54096.1| pyruvate carboxylase [Clostridium butyricum E4 str. BoNT E BL5262]
          Length = 1148

 Score = 77.5 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 39/222 (17%), Positives = 83/222 (37%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+       E   I +            DK++SK V    GVPV P    
Sbjct: 81  AIHPGYGFLSENAEFARRCEEAGIEFIGPKSEMMEKLGDKIQSKIVAEGVGVPVIPGLDK 140

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS-----SSWNHGD 164
            +      +++      P ++K   GG   G+ ++++++ +  +   +      ++   D
Sbjct: 141 PVETEAEALEAAKYCGYPVMVKAAAGGGGRGMRIVRREEELVENYRNAKNEAKKAFGIDD 200

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLD 222
            + IE+Y++    +   V+GD   +V  +            K          PA  +  +
Sbjct: 201 -IFIEKYIERPKHIEIQVLGDKYGNVVHLYERDCSIQRRHQK-----VIEFTPAITLSDE 254

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +E+   A    +++  R     +FL D      +++E+N 
Sbjct: 255 KRQEICNDALKIAKSVDYRSAGTLEFLVDANGNH-YFIEMNP 295


>gi|227824462|ref|ZP_03989294.1| carbamoyl-phosphate synthase [Acidaminococcus sp. D21]
 gi|226904961|gb|EEH90879.1| carbamoyl-phosphate synthase [Acidaminococcus sp. D21]
          Length = 1068

 Score = 77.5 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 43/286 (15%), Positives = 101/286 (35%), Gaps = 32/286 (11%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ------ 69
           AL++ G++   I         D D +  L    L  +   NV+     E  +VQ      
Sbjct: 580 ALKEEGYETIIINNNPETVSTDFDTADRLYFEPLTLEDVLNVIDREQPEGVIVQFGGQTA 639

Query: 70  ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHL 123
                 L    +    + +     + D+ R  +V++  G+P      V      + + H 
Sbjct: 640 INLAGPLHSCGVKILGTSVDDIDRAEDRERFDEVLTEVGIPRPKGHTVFDVEGAVKAAHD 699

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
              P +++P        + ++  D  +   +  +   +    +L++ Y+ G E+    + 
Sbjct: 700 DGYPVMVRPSYVLGGRAMEIVYNDDQLRYYMANAVKASKEHPVLVDHYLMGTEVEVDAIS 759

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRG 242
           D      ++ +P    +       S +S  V P + +   I + +          +  +G
Sbjct: 760 DG----VDVVIPGIMEHIERAGVHSGDSIAVYPPRTLSEHIIEAIIEYTNKLALTLHVKG 815

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           +    ++      K++ +E+N +   T     P ++   G S  ++
Sbjct: 816 LLNIQYIVR--DEKLYIIEVNPRSSRT----VPFLSKVTGISMVDV 855



 Score = 64.8 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 49/287 (17%), Positives = 104/287 (36%), Gaps = 35/287 (12%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI---------DVD------------RSVGLV 45
           G ++E + +   G     AL++ G +V  +         DV               +  V
Sbjct: 21  GQAAEFDYA---GTQACRALKEEGLEVVLVNSNPATIMTDVHIADRVYVEPLNVEFLESV 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   +PD     L G  G +  ++     IL+   +    + I +   + D+   K+ + 
Sbjct: 78  IQKERPDSLLATLGGQIGLNLAIELDKTGILKKYNVKLIGTQIPSIMKAEDRELFKETME 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
               P+  S +V       +    I  P +++P       G  +   D  +     +   
Sbjct: 138 KLHQPIPQSTIVESVAAAKEFADRIGYPLIVRPAYTLGGTGGGIAHNDAELDDICTKGLQ 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
           ++   Q+LIE+ V G  E+   V+ D + +   I V   +       ++  +S  V P +
Sbjct: 198 YSLIGQVLIERSVAGWKEIEFEVIRDHADN--CITVCNMENLDPVGVHT-GDSIVVAPCQ 254

Query: 219 -IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +     + ++  A    + +G  G     +  +P S +   +E+N 
Sbjct: 255 TLTDREVQMLRTAAIDIVRELGVEGGCNVQYALNPDSEEYIVIEVNP 301


>gi|237654103|ref|YP_002890417.1| acetyl-CoA carboxylase biotin carboxylase subunit [Thauera sp.
           MZ1T]
 gi|237625350|gb|ACR02040.1| acetyl-CoA carboxylase, biotin carboxylase [Thauera sp. MZ1T]
          Length = 452

 Score = 77.5 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 37/238 (15%), Positives = 82/238 (34%), Gaps = 24/238 (10%)

Query: 38  VDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSK 97
           +  +       + P   F   + +FGE       +E     +         L  DK+ +K
Sbjct: 67  ISAAEVTDAEAIHPGYGFLSENADFGER------VEQSGFVFIGPRPETIRLMGDKVSAK 120

Query: 98  QVVSSCGVPVCPSI-----LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152
             + + GVP  P          +  +     +  P +IK   GG   G+ V+  + ++  
Sbjct: 121 DAMKAAGVPCVPGSDGALPEDPKEIVKIARAVGYPVIIKAAGGGGGRGMRVVHTEAALLN 180

Query: 153 DL----LQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYS 207
            +     ++ +      + +E++++    +   ++ D   +   +            K  
Sbjct: 181 AVTTTRAEAQAAFGNPVVYMEKFLENPRHVEIQILADQHGNAVYLGERDCSMQRRHQK-- 238

Query: 208 SLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
                   PA  I      +V      A + IG RG    +FL+   + + +++E+N 
Sbjct: 239 ---VIEEAPAPGIDRKTIAKVGERCAEACRKIGYRGAGTFEFLY--ENGEFYFIEMNT 291


>gi|295130560|ref|YP_003581223.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium
           acnes SK137]
 gi|291375949|gb|ADD99803.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium
           acnes SK137]
          Length = 1068

 Score = 77.5 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 43/297 (14%), Positives = 106/297 (35%), Gaps = 36/297 (12%)

Query: 24  SALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLV------ 68
            A++ AG++   +         D   S  L    L  +   NV+      DG++      
Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSISDKLYFEPLTFEDVMNVVD-LEQPDGVIVQFGGQ 637

Query: 69  -----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ-- 121
                   L    +P   + +     + D+   + +++  G+P  P              
Sbjct: 638 TAINLAGPLSAAGVPILGTQVADLDRAEDREGFESLLAELGIPQAPGGTARSSEEAFAVA 697

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
             +  P +++P        + ++   + +   +  +   +    +L+++Y++G+E     
Sbjct: 698 EELGYPVLVRPSYVIGGRAMAIVTSAEELKRYMRDAVHASPDKPVLVDRYLNGLECEVDA 757

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGC 240
           + D     T++ +P    +       S +S  V P  ++   +   +  +     + +  
Sbjct: 758 ICDG----TDVLIPGIMEHIERAGVHSGDSMAVYPPQRMSQHVADRIIEVTTKLARGLKT 813

Query: 241 RGISRSDFLF--DPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +GI    F+   DP + +  V+ +E N +   T     P ++   G S  E+   ++
Sbjct: 814 KGILNIQFVVANDPATGEETVYVIEANPRASRT----VPFLSKVTGVSMAEVATRII 866



 Score = 71.7 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 46/268 (17%), Positives = 99/268 (36%), Gaps = 30/268 (11%)

Query: 25  ALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNVLHGNFG 63
           AL++ G++V  ++        DR V                +L   +PD     L G  G
Sbjct: 36  ALKEEGYEVILVNSNPATIMTDRDVADKVYIEPITLEFVSSILRRERPDAIVPTLGGQTG 95

Query: 64  EDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
            +   +     IL+ L I    +   A   + D+   KQ++   G PV  S +V+     
Sbjct: 96  LNMATELAKSGILDELGIELLGTKPSAIEKAEDRDLFKQLMDELGQPVPASEVVHTVDEA 155

Query: 120 SQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IE 176
            +  + I  P +++P       G  +   +  +   + +    +   + LIEQ + G  E
Sbjct: 156 VKVGNTIGYPLIVRPAYTLGGTGGGMCCDETELVRIVGKGLELSPVTECLIEQSIAGFKE 215

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +   +M D + +   + V   + +     ++  +        +    ++ ++  +    +
Sbjct: 216 IEYEMMRDGADNT--MVVCTMENFDPVGVHTGDSIVFAPTQTLTDVEHEMLRDASIEIVR 273

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +G  G        DP S + + +E+N 
Sbjct: 274 TLGIEGGCNVQLALDPNSFQYYVIEVNP 301


>gi|206602747|gb|EDZ39228.1| Acetyl-CoA carboxylase, biotin carboxylase [Leptospirillum sp.
           Group II '5-way CG']
          Length = 456

 Score = 77.5 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 41/220 (18%), Positives = 80/220 (36%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     I +   + +      + +L  DK R+K ++    VPV P    
Sbjct: 82  AIHPGYGFLSENAHFAEICQSAGVVFIGPSPESISLMGDKARAKSLMRETRVPVVPGSQG 141

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK----DQSIPLDLLQSSSWNHGDQ 165
            I      +     I  P +IK   GG   G+ ++ +    D ++     ++       +
Sbjct: 142 AISSEEEAITLSREIGYPLIIKASAGGGGRGMRIVHQEGDFDNALHAAQTEAFQAFGSKE 201

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+Y  +   +   ++ DA  +V  +            K             +   + 
Sbjct: 202 VYIEKYFQNPRHVEIQILADAEGNVYSLGERDCSIQRRHQK----LVEESPSPVLSAKLR 257

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +E+   A  A +A G       +FL D   R  F++E+N 
Sbjct: 258 QEMSEAAVRAARAAGYVNAGTVEFLVDDR-RNFFFIEMNT 296


>gi|92117691|ref|YP_577420.1| carbamoyl-phosphate synthase L chain, ATP-binding [Nitrobacter
           hamburgensis X14]
 gi|91800585|gb|ABE62960.1| biotin carboxylase / biotin carboxyl carrier protein [Nitrobacter
           hamburgensis X14]
          Length = 671

 Score = 77.5 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 74/220 (33%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H  +G   E       L    + +      A A   DK+ SK+  +  GV   P  L 
Sbjct: 77  AVHPGYGFLSEREAFPRALADAGLVFIGPNPGAIAAMGDKIESKKAAAKAGVSTVPGFLG 136

Query: 113 ---VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSWNHGDQ 165
               +R  +     I  P +IK   GG   G+ +      +     L   ++ S    D+
Sbjct: 137 VIEDDRHAVKIADEIGYPVMIKASAGGGGKGMRIAHATAEVAEGFGLAKAEAKSSFGDDR 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+++ D   +   V+GD   +V  +   +        K             +     
Sbjct: 197 VFIEKFITDPRHIEIQVLGDKHGNVIYLGERECSIQRRNQK----VIEEAPSPLLDETTR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +++   A     A+        +F      +  ++LE+N 
Sbjct: 253 RKMGEQAVALAMAVNYDSAGTVEF-VAGQDKSFYFLEMNT 291


>gi|328953312|ref|YP_004370646.1| acetyl-CoA carboxylase, biotin carboxylase [Desulfobacca
           acetoxidans DSM 11109]
 gi|328453636|gb|AEB09465.1| acetyl-CoA carboxylase, biotin carboxylase [Desulfobacca
           acetoxidans DSM 11109]
          Length = 477

 Score = 77.5 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 38/219 (17%), Positives = 85/219 (38%), Gaps = 16/219 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       E   I +      A     +K+R+++++++ GVP+ P   V
Sbjct: 76  AIHPGYGFIAENWRFAHACEEAGIGFIGPTSTAIRSMGNKIRAREMMATAGVPLVPGSPV 135

Query: 114 ---NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS----IPLDLLQSSSWNHGDQL 166
              +    D    I  P +IK   GG   G+ +++ D+     +P+   ++      + +
Sbjct: 136 LQTDGEAKDWAARIGYPLMIKAKAGGGGRGMRLVQDDEELLRGLPVARAEAQKAFADEAI 195

Query: 167 LIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
            +E+++     +   +M D   +   +            K   +  + V    +  +   
Sbjct: 196 YLEKFIAQPKHIEIQIMADRYGNTIHLGERDCSIQRRHQKLIEIAPSLV----LTPEKRA 251

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           E+  +A  A + I    +   +FL D      ++LE+N 
Sbjct: 252 EMGEVAKQAARQINYHTVGTVEFLVDRDLNH-YFLEMNT 289


>gi|325969049|ref|YP_004245241.1| alpha-L-glutamate ligase, RimK family [Vulcanisaeta moutnovskia
           768-28]
 gi|323708252|gb|ADY01739.1| alpha-L-glutamate ligase, RimK family [Vulcanisaeta moutnovskia
           768-28]
          Length = 260

 Score = 77.5 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 48/258 (18%), Positives = 100/258 (38%), Gaps = 24/258 (9%)

Query: 23  ASALEDAGFKVSQIDVDR---SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPY 79
            S     G  V  I++D     +          L   + H       L+  IL    +  
Sbjct: 1   MSEFRRFGVDVELINIDNISLDLNEGWNETGIVLVRPLSHFKA---SLIARILNTHGVKT 57

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSL 139
            +SG +A   S +K  +  ++   G+PV P+ L+    +  +  +  P +IKPL G    
Sbjct: 58  INSG-MAIENSWNKAIAISILVRSGIPVVPTKLMF-SEVPQEDGVDYPAIIKPLHGSWGR 115

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQL-LIEQYV-DGIELTCGVMGDASLDVTEIAVPKS 197
            + ++     + L L   +  +   ++ +I+ ++ DG +    V+G+ ++        + 
Sbjct: 116 LVSLVSDVDELKLILRHKAFSDTYLKVSVIQPFIGDGTDYRVFVVGNETVASMVRRPVEG 175

Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
           ++ S   +     +      ++  ++Y+    +A  A  A+G    +  D L+      V
Sbjct: 176 EWRSNVARGGKAEA-----VRLGDEVYE----MAIKAVYALGL-DYAGVDVLYSREYGYV 225

Query: 258 FWLEINVQP---GMTPVS 272
              E+N  P   G+  VS
Sbjct: 226 -VNEVNAIPEFKGLMSVS 242


>gi|253701259|ref|YP_003022448.1| acetyl-CoA carboxylase, biotin carboxylase [Geobacter sp. M21]
 gi|251776109|gb|ACT18690.1| acetyl-CoA carboxylase, biotin carboxylase [Geobacter sp. M21]
          Length = 446

 Score = 77.5 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 81/220 (36%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+ +   I E   I +      +  +  DK+ ++Q V   GVP+ P    
Sbjct: 77  AIHPGYGFLSENPVFAEICEKCGITFIGPSAESMRIMGDKISARQAVIKVGVPILPGTKE 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
            +      +     I  P +IK   GG   G+ ++    ++P     + +         +
Sbjct: 137 GVHDVAEAIKVAKEIGFPVIIKATAGGGGRGMKIVHSPAALPNAFATARAEAQSGFGNPE 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+Y +    +   ++ D   +V  +            K      + V       ++ 
Sbjct: 197 VYIERYCESPRHVEIQILADKHGNVVHLGERDCSIQRRHQKVIEEAPSTVT----TPELR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K +   A  A +A+    +   +FL D  +   F++E+N 
Sbjct: 253 KAMGEAAVAAAKAVNYCSVGTMEFLVDK-NNNFFFMEMNT 291


>gi|222081198|ref|YP_002540561.1| acetyl-CoA carboxylase, biotin carboxylase [Agrobacterium
           radiobacter K84]
 gi|221725877|gb|ACM28966.1| acetyl-CoA carboxylase, biotin carboxylase [Agrobacterium
           radiobacter K84]
          Length = 457

 Score = 77.5 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 82/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--I 111
            +H  +G   E+      +E   + +      A  +  DK+ +K+ +   GVP  P    
Sbjct: 85  AIHPGYGFLSENAGFAQAVENTGLVFIGPPASAIRMMGDKIAAKRAMIEAGVPCVPGPDT 144

Query: 112 LVNRFTM---DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
            +        +    I  P ++K   GG   G+ V+    ++   +     ++       
Sbjct: 145 ALPENIAAIREIARDIGYPVIVKAAGGGGGRGMRVVHDASALEDAVSVTREEARRAFGTP 204

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
           +L +E++++    +   V+ D   +   +            +          PA  +P++
Sbjct: 205 ELYLEKFLEHPRHVEIQVLCDNHGNAVWL-----GHRDCSTQRRHQKVVEEAPAPGMPVE 259

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           I   V      A + IG RG+   +FL+   +   +++E+N 
Sbjct: 260 IAAAVGERCVEACRRIGYRGVGTFEFLY--ENGAFYFIEMNT 299


>gi|328760626|gb|EGF74193.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium
           acnes HL099PA1]
          Length = 1068

 Score = 77.5 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 43/297 (14%), Positives = 106/297 (35%), Gaps = 36/297 (12%)

Query: 24  SALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLV------ 68
            A++ AG++   +         D   S  L    L  +   NV+      DG++      
Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSISDKLYFEPLTFEDVMNVVD-LEQPDGVIVQFGGQ 637

Query: 69  -----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ-- 121
                   L    +P   + +     + D+   + +++  G+P  P              
Sbjct: 638 TAINLAGPLSAAGVPILGTQVADLDRAEDREGFESLLAELGIPQAPGGTARSSEEAFAVA 697

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
             +  P +++P        + ++   + +   +  +   +    +L+++Y++G+E     
Sbjct: 698 EELGYPVLVRPSYVIGGRAMAIVTSAEELKRYMRDAVHASPDKPVLVDRYLNGLECEVDA 757

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGC 240
           + D     T++ +P    +       S +S  V P  ++   +   +  +     + +  
Sbjct: 758 ICDG----TDVLIPGIMEHIERAGVHSGDSMAVYPPQRMSQHVADRIIEVTTKLARGLKT 813

Query: 241 RGISRSDFLF--DPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +GI    F+   DP + +  V+ +E N +   T     P ++   G S  E+   ++
Sbjct: 814 KGILNIQFVVANDPATGEETVYVIEANPRASRT----VPFLSKVTGVSMAEVATRII 866



 Score = 72.5 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 46/268 (17%), Positives = 99/268 (36%), Gaps = 30/268 (11%)

Query: 25  ALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNVLHGNFG 63
           AL++ G++V  ++        DR V                +L   +PD     L G  G
Sbjct: 36  ALKEEGYEVILVNSNPATIMTDRDVADKVYIEPITLEFVSSILRRERPDAIVPTLGGQTG 95

Query: 64  EDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
            +   +     IL+ L I    +   A   + D+   KQ++   G PV  S +V+     
Sbjct: 96  LNMATELAKSGILDELGIELLGTKPSAIEKAEDRDLFKQLMDELGQPVPASEVVHTVDEA 155

Query: 120 SQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IE 176
            +  + I  P +++P       G  +   +  +   + +    +   + LIEQ + G  E
Sbjct: 156 VKVGNTIGYPLIVRPAYTLGGTGGGMCCDEAELVRIVGKGLELSPVTECLIEQSIAGFKE 215

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +   +M D + +   + V   + +     ++  +        +    ++ ++  +    +
Sbjct: 216 IEYEMMRDGADNT--MVVCTMENFDPVGVHTGDSIVFAPTQTLTDVEHEMLRDASIEIVR 273

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +G  G        DP S + + +E+N 
Sbjct: 274 TLGIEGGCNVQLALDPNSFQYYVIEVNP 301


>gi|298694809|gb|ADI98031.1| acetyl-CoA carboxylase, biotin carboxylase [Staphylococcus aureus
           subsp. aureus ED133]
          Length = 451

 Score = 77.5 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/216 (15%), Positives = 83/216 (38%), Gaps = 15/216 (6%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-SILVNRFT 117
           +G   E+     + E  ++ +      +      K  +K  +    VPV P S  + +  
Sbjct: 81  YGFLAENADFAELCEACQLKFIGPSYQSIQKMGIKDVAKAEMIKANVPVVPGSDGLMKDV 140

Query: 118 MDSQHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS-----SWNHGDQLLIE 169
            +++ +   I  P +IK   GG   GI V + ++ +      +      ++ +G  L +E
Sbjct: 141 SEAKKIAKKIGYPVIIKATAGGGGKGIRVARNEKELETGFRMTEQEAQTAFGNGG-LYME 199

Query: 170 QYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           ++++    +   ++GD+  +V  +            +             +  +  +E+ 
Sbjct: 200 KFIENFRHIEIQIVGDSYGNVIHLGERDCTI----QRRMQKLVEEAPSPILDDETRREMG 255

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             A  A +A+        +F++D    K +++E+N 
Sbjct: 256 NAAVRAAKAVNYENAGTIEFIYDLNDNKFYFMEMNT 291


>gi|289427092|ref|ZP_06428808.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium
           acnes J165]
 gi|289159561|gb|EFD07749.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium
           acnes J165]
 gi|313772127|gb|EFS38093.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium
           acnes HL074PA1]
 gi|313807482|gb|EFS45969.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium
           acnes HL087PA2]
 gi|313809991|gb|EFS47712.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium
           acnes HL083PA1]
 gi|313820293|gb|EFS58007.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium
           acnes HL036PA1]
 gi|313822899|gb|EFS60613.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium
           acnes HL036PA2]
 gi|313825168|gb|EFS62882.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium
           acnes HL063PA1]
 gi|313830319|gb|EFS68033.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium
           acnes HL007PA1]
 gi|313833694|gb|EFS71408.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium
           acnes HL056PA1]
 gi|314925179|gb|EFS89010.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium
           acnes HL036PA3]
 gi|314960037|gb|EFT04139.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium
           acnes HL002PA2]
 gi|314973324|gb|EFT17420.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium
           acnes HL053PA1]
 gi|314976002|gb|EFT20097.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium
           acnes HL045PA1]
 gi|314978460|gb|EFT22554.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium
           acnes HL072PA2]
 gi|314983978|gb|EFT28070.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium
           acnes HL005PA1]
 gi|314988161|gb|EFT32252.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium
           acnes HL005PA2]
 gi|314989965|gb|EFT34056.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium
           acnes HL005PA3]
 gi|315085691|gb|EFT57667.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium
           acnes HL002PA3]
 gi|315088888|gb|EFT60864.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium
           acnes HL072PA1]
 gi|315096239|gb|EFT68215.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium
           acnes HL038PA1]
 gi|327326152|gb|EGE67942.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium
           acnes HL096PA2]
 gi|327331972|gb|EGE73709.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium
           acnes HL096PA3]
 gi|327443174|gb|EGE89828.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium
           acnes HL013PA2]
 gi|327445961|gb|EGE92615.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium
           acnes HL043PA2]
 gi|327448060|gb|EGE94714.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium
           acnes HL043PA1]
 gi|328753505|gb|EGF67121.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium
           acnes HL020PA1]
 gi|332675400|gb|AEE72216.1| carbamoyl-phosphate synthase large chain [Propionibacterium acnes
           266]
          Length = 1068

 Score = 77.5 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 43/297 (14%), Positives = 106/297 (35%), Gaps = 36/297 (12%)

Query: 24  SALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLV------ 68
            A++ AG++   +         D   S  L    L  +   NV+      DG++      
Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSISDKLYFEPLTFEDVMNVVD-LEQPDGVIVQFGGQ 637

Query: 69  -----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ-- 121
                   L    +P   + +     + D+   + +++  G+P  P              
Sbjct: 638 TAINLAGPLSAAGVPILGTQVADLDRAEDREGFESLLAELGIPQAPGGTARSSEEAFAVA 697

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
             +  P +++P        + ++   + +   +  +   +    +L+++Y++G+E     
Sbjct: 698 EELGYPVLVRPSYVIGGRAMAIVTSAEELKRYMRDAVHASPDKPVLVDRYLNGLECEVDA 757

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGC 240
           + D     T++ +P    +       S +S  V P  ++   +   +  +     + +  
Sbjct: 758 ICDG----TDVLIPGIMEHIERAGVHSGDSMAVYPPQRMSQHVADRIIEVTTKLARGLKT 813

Query: 241 RGISRSDFLF--DPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +GI    F+   DP + +  V+ +E N +   T     P ++   G S  E+   ++
Sbjct: 814 KGILNIQFVVANDPATGEETVYVIEANPRASRT----VPFLSKVTGVSMAEVATRII 866



 Score = 72.5 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 46/268 (17%), Positives = 99/268 (36%), Gaps = 30/268 (11%)

Query: 25  ALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNVLHGNFG 63
           AL++ G++V  ++        DR V                +L   +PD     L G  G
Sbjct: 36  ALKEEGYEVILVNSNPATIMTDRDVADKVYIEPITLEFVSSILRRERPDAIVPTLGGQTG 95

Query: 64  EDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
            +   +     IL+ L I    +   A   + D+   KQ++   G PV  S +V+     
Sbjct: 96  LNMATELAKSGILDELGIELLGTKPSAIEKAEDRDLFKQLMDELGQPVPASEVVHTVDEA 155

Query: 120 SQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IE 176
            +  + I  P +++P       G  +   +  +   + +    +   + LIEQ + G  E
Sbjct: 156 VKVGNTIGYPLIVRPAYTLGGTGGGMCCDEAELVRIVGKGLELSPVTECLIEQSIAGFKE 215

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +   +M D + +   + V   + +     ++  +        +    ++ ++  +    +
Sbjct: 216 IEYEMMRDGADNT--MVVCTMENFDPVGVHTGDSIVFAPTQTLTDVEHEMLRDASIEIVR 273

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +G  G        DP S + + +E+N 
Sbjct: 274 TLGIEGGCNVQLALDPNSFQYYVIEVNP 301


>gi|294656495|ref|XP_002770271.1| DEHA2D07040p [Debaryomyces hansenii CBS767]
 gi|199431516|emb|CAR65627.1| DEHA2D07040p [Debaryomyces hansenii]
          Length = 1821

 Score = 77.5 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 30/196 (15%), Positives = 68/196 (34%), Gaps = 12/196 (6%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS---ILVNRFTMDSQHLISPPYVIKP 132
            I +      A      K  ++++ +  GVP+ P    +L ++        +  P ++K 
Sbjct: 719 GIVFVGPSGDAIRKLGLKHSAREIAARAGVPLVPGSDLVLDSQEAKSIAAKLEYPVMVKS 778

Query: 133 LKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQLLIEQYV-DGIELTCGVMGDASL 187
             GG  +G+  +  +  I         Q  S+     + IE++V D   +   V GD   
Sbjct: 779 TAGGGGIGLQKVDSEDDIERVFQTVQHQGKSYFGDSGVFIERFVEDARHVEVQVFGDGYG 838

Query: 188 DVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
               +            K             +      ++++ +     +I  +     +
Sbjct: 839 KAIALGERDCSLQRRNQKII----EETPAPNLTETTRIKMRKASESLAASINYKCAGTVE 894

Query: 248 FLFDPLSRKVFWLEIN 263
           F++D    + ++LE+N
Sbjct: 895 FIYDEKRDEFYFLEVN 910


>gi|77919211|ref|YP_357026.1| carbamoyl-phosphate synthase large subunit [Pelobacter carbinolicus
           DSM 2380]
 gi|77545294|gb|ABA88856.1| carbamoyl-phosphate synthase large subunit [Pelobacter carbinolicus
           DSM 2380]
          Length = 1084

 Score = 77.5 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 51/278 (18%), Positives = 103/278 (37%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G+ V  +         D +              +  ++   +PD    
Sbjct: 29  SGTQACKALKEEGYTVILLNSNPATIMTDPETADRTYVEPVTPEVLEKIIEAERPDAILP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G    +  V      +LE   +    + + A   + D+   K+ ++  GV V  S L
Sbjct: 89  TLGGQTALNTAVAAAQNGVLERYGVELIGASLPAIEKAEDRTLFKEAMAKIGVAVPRSGL 148

Query: 113 VNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            + +   M     +  P +I+P       G  +    +      L     +  D++L+E+
Sbjct: 149 AHSYEEAMKIIEYVGYPAIIRPSFTLGGTGGGIAYNREEYEALALGGIDASPTDEILVEE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            + G  E    VM D + +V  I   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SIIGWKEFELEVMRDKADNVVIICSIEN----FDAMGVHTGDSITVAPAQTLSDKEYQLL 264

Query: 228 QRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P+  ++  +E+N 
Sbjct: 265 RDASIKIIREIGVDTGGSNIQFAINPVDGRLAVIEMNP 302



 Score = 58.2 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/196 (14%), Positives = 72/196 (36%), Gaps = 8/196 (4%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--QHLISPPYV 129
           LE   +P   +   A   + D+ R + ++    +    + L   F         I  P V
Sbjct: 664 LEKAGVPIIGTSPDAIDRAEDRERFQALLFKLNLLQPDNGLARSFDEAEKIAERIGYPVV 723

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLD 188
           ++P        + ++    ++   +  +   +    +LI+++++  IE+    + D    
Sbjct: 724 VRPSYVLGGRAMEIVYHVDALRNYMQNAVQASPDHPILIDKFLEHAIEVDVDALCDGKSV 783

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           V    +   +       +S  ++  + P  +  +I  E++R        +G  G+    +
Sbjct: 784 VIGGIMQHIEEAGI---HSGDSACALPPFSLKPEIVDEIRRQTRELALELGVVGLMNIQY 840

Query: 249 LFDPLSRKVFWLEINV 264
                +  ++ LE+N 
Sbjct: 841 AVKEDT--IYLLEVNP 854


>gi|325920899|ref|ZP_08182794.1| acetyl/propionyl-CoA carboxylase, alpha subunit [Xanthomonas
           gardneri ATCC 19865]
 gi|325548651|gb|EGD19610.1| acetyl/propionyl-CoA carboxylase, alpha subunit [Xanthomonas
           gardneri ATCC 19865]
          Length = 677

 Score = 77.5 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 76/221 (34%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H  +G   E+           I +      A     DK  +K ++   GVP+ P    
Sbjct: 90  AIHPGYGFLSENAAFADACAQAGIVFIGPPAAAIRAMGDKSAAKALMQRAGVPLTPGYHG 149

Query: 113 ---VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
                 F       I  P +IK   GG   G+  +    +    L     ++ S     Q
Sbjct: 150 DEQAPAFLRAQADAIGYPVLIKASAGGGGKGMRRVDASDAFEEALASCQREAQSAFGNAQ 209

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           +L+E+YV+    +   V GD   +V  +           ++          PA  +    
Sbjct: 210 VLVEKYVERPRHIEIQVFGDTQGEVVYL-----FERDCSVQRRHQKVLEEAPAPGMSEHR 264

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              + + A  A +A+G  G    +F+  P     +++E+N 
Sbjct: 265 RAAMGKAAVDAARAVGYVGAGTVEFIAGP-DGDFYFMEMNT 304


>gi|332854998|ref|ZP_08435654.1| urea carboxylase [Acinetobacter baumannii 6013150]
 gi|332869484|ref|ZP_08438802.1| urea carboxylase [Acinetobacter baumannii 6013113]
 gi|332727692|gb|EGJ59105.1| urea carboxylase [Acinetobacter baumannii 6013150]
 gi|332732714|gb|EGJ63936.1| urea carboxylase [Acinetobacter baumannii 6013113]
          Length = 1201

 Score = 77.5 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 41/257 (15%), Positives = 88/257 (34%), Gaps = 32/257 (12%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     + E   I +             K  ++++     VP+ P    
Sbjct: 77  AIHPGYGFLSENAEFCDLCESQGIAFIGPTSSQMLDFGLKHTARELAIKSNVPLLPGSSL 136

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN----HGDQL 166
           +      +     I  P ++K   GG  +G+ ++  +  +       S           L
Sbjct: 137 LANEAEALAEAARIGYPVMLKSTAGGGGIGMRLVWNETELKDAFQTVSYLAQVNFKDAGL 196

Query: 167 LIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIY 224
            +E++V     +   + GD    V  +           ++  +       PA  +     
Sbjct: 197 YLEKFVQHARHIEVQIFGDGQGQVLALGE-----RDCSVQRRNQKVIEETPAPHLNEQQR 251

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
             +Q++A    Q++  R     +F+ D  +++ ++LE+N             +    G +
Sbjct: 252 DYLQKVAIQLMQSVNYRSAGTVEFVMDTETQEFYFLEVNT-----------RLQVEHGVT 300

Query: 285 ---FR-ELLLWMVEDAS 297
              F  +L+ WMV  AS
Sbjct: 301 EQVFGVDLVEWMVTLAS 317


>gi|288553133|ref|YP_003425068.1| carbamoyl phosphate synthase large subunit [Bacillus pseudofirmus
           OF4]
 gi|288544293|gb|ADC48176.1| carbamoyl phosphate synthase large subunit [Bacillus pseudofirmus
           OF4]
          Length = 1089

 Score = 77.5 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 47/287 (16%), Positives = 106/287 (36%), Gaps = 35/287 (12%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFN---------- 56
           G ++E + +   G     AL++ G++V  I+ + +  +    +  D  +           
Sbjct: 21  GQAAEFDYA---GTQACQALKEEGYEVILINSNPATIMTDTTM-ADRVYIEPITLEFVSR 76

Query: 57  ------------VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVV 100
                        L G  G +  ++     IL+   I    + + A   + D+ + + ++
Sbjct: 77  IIRQERPCGIVATLGGQTGLNMAMELDESGILDAYNIELLGTDLKAIKQAEDREQFRALM 136

Query: 101 SSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS 158
           +    PV  S +V+           I  P +++P       G  ++  D+ +   +    
Sbjct: 137 NELNEPVPESEIVHTVEEAQVFVRKIGYPIIVRPAYTLGGTGGGIVHNDEELIEIVSSGL 196

Query: 159 SWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
            ++   Q L+E+ + G  E+   VM DAS     I V   + +     ++  +       
Sbjct: 197 KYSPVTQCLVEKSIAGFKEVEYEVMRDASDQA--IVVCNMENFDPVGVHTGDSIVFAPSQ 254

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +    Y+ ++  +    +A+G  G     F  D  S + + +E+N 
Sbjct: 255 TLTDRDYQMLRNSSLKIIRALGIEGGCNVQFALDADSDQYYIIEVNP 301



 Score = 59.8 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 32/220 (14%), Positives = 80/220 (36%), Gaps = 13/220 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--QHLISPPYV 129
           L    +    + +     + D+ + +Q + +  +P                   I  P +
Sbjct: 646 LAARGVKIIGTSLEDMDRAEDRDKFEQTLMALDIPQPLGKTATSVEQAVKIAANIGYPVL 705

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           ++P        + ++ K++ +   +  +   N    +LI++Y+ G EL    + D     
Sbjct: 706 VRPSYVLGGRAMEIVYKEEELLHYMTHAVKINPKHPVLIDRYLTGKELEVDAISDGE--- 762

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
             + +P    +       S +S  V P + +P  + +++        + +   G+    +
Sbjct: 763 -NVYIPGMMEHIERAGVHSGDSIAVYPPQTVPDHLKQKIIDRTIAIARGLNIVGLLNIQY 821

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           ++     +V+ LE+N +   T     P ++   G S   L
Sbjct: 822 VWHQ--DEVYVLEVNPRSSRT----VPFLSKITGVSMANL 855


>gi|149921128|ref|ZP_01909586.1| pyruvate carboxylase [Plesiocystis pacifica SIR-1]
 gi|149818015|gb|EDM77474.1| pyruvate carboxylase [Plesiocystis pacifica SIR-1]
          Length = 1160

 Score = 77.5 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 43/245 (17%), Positives = 86/245 (35%), Gaps = 24/245 (9%)

Query: 33  VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASAL 89
            + +D+D  +  +      D     +H  +G   E        E   I +         +
Sbjct: 70  AAYLDID-GIIEIAKQNHVD----AIHPGYGFLSERADFARACEKNGIRFVGPSAEVIEV 124

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI----SPPYVIKPLKGGSSLGIIVIK 145
             DK R++ +    GVPV P       + ++          P +IK   GG   G+ V++
Sbjct: 125 LGDKTRARALAIEAGVPVVPGTDGPVASFEAAEAFVTEHGLPVIIKAAMGGGGRGMRVVR 184

Query: 146 KDQSIPLDLL----QSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFY 200
           +   +         ++ +      + IE+YVD    +   ++ D S +V           
Sbjct: 185 EASELAEAFERAQSEAEAAFGDGTVFIERYVDRPRHIEVQILADGSGEVI-----HLFER 239

Query: 201 SYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
              ++          PA  +   + + + R A    +  G R     +FL D  +R  ++
Sbjct: 240 DCSVQRRHQKVVETAPAVHLDEGVREALTRDAVTLARRCGYRNAGTVEFLVDGQNRH-YF 298

Query: 260 LEINV 264
           +E+N 
Sbjct: 299 IEVNP 303


>gi|154248644|ref|YP_001419602.1| carbamoyl-phosphate synthase L chain ATP-binding [Xanthobacter
           autotrophicus Py2]
 gi|154162729|gb|ABS69945.1| Carbamoyl-phosphate synthase L chain ATP-binding [Xanthobacter
           autotrophicus Py2]
          Length = 675

 Score = 77.5 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 75/220 (34%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H  +G   E      +L    I +      A     DK+ SK+  ++  V   P  L 
Sbjct: 77  AVHPGYGFLSERASFPKLLAEHGIVFIGPNPHAIDAMGDKIESKKAAAAAHVSTVPGYLG 136

Query: 113 -VNRFTMDS--QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
            +   T  +     I  P +IK   GG   G+ +      +     ++ S        D+
Sbjct: 137 VLENGTEAAKIADEIGYPVMIKASAGGGGKGMRIAYSRDEVQDGFDRAKSEAKSSFGDDR 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+++ D   +   V+GD   +V  +   +        K             +     
Sbjct: 197 VFVEKFIVDPRHIEIQVLGDKHGNVIYLGERECSIQRRNQK----VVEEAPSPLLDEATR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K++   A    +A+G       +F      +  ++LE+N 
Sbjct: 253 KKMGEQAVALAKAVGYDSAGTVEF-VAGQDKSFYFLEMNT 291


>gi|284038412|ref|YP_003388342.1| carbamoyl-phosphate synthase L chain ATP- binding protein
           [Spirosoma linguale DSM 74]
 gi|283817705|gb|ADB39543.1| Carbamoyl-phosphate synthase L chain ATP- binding protein
           [Spirosoma linguale DSM 74]
          Length = 517

 Score = 77.5 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 80/220 (36%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+      +    + +      +  +   K+ +K  V++  +P+ P    
Sbjct: 97  AIHPGYGFLSENAGFARSVREAGLIFIGPSPESIEVMGSKLAAKAAVANYNIPMVPGTPS 156

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK----DQSIPLDLLQSSSWNHGDQ 165
            I            I  P +IK   GG   G+ V++     D+ +   + ++ S      
Sbjct: 157 AITDRAEAKVISAKIGYPILIKASAGGGGKGMRVVENEADFDEQMDRAVSEAISAFGDGS 216

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+YV     +   V+GD   ++  +   +        K           A +  +I 
Sbjct: 217 VFIEKYVTSPRHVEIQVLGDQHGNIIHLFERECSVQRRHQK----VVEEAPSAILTPEIR 272

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             + R A    +A G  G    +F+ +  +   ++LE+N 
Sbjct: 273 DAMGRAAVDVARACGYYGAGTVEFIVN-DTLDFYFLEMNT 311


>gi|189502115|ref|YP_001957832.1| hypothetical protein Aasi_0716 [Candidatus Amoebophilus asiaticus
           5a2]
 gi|189497556|gb|ACE06103.1| hypothetical protein Aasi_0716 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 454

 Score = 77.5 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 36/222 (16%), Positives = 80/222 (36%), Gaps = 19/222 (8%)

Query: 56  NVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
           N +H  +G   E+     I +  +I +      + +   DK  +K  +   GVP  P   
Sbjct: 76  NAIHPGYGFLSENSSFSRICQEHDIKFIGPSPESISKMGDKATAKDTMKKAGVPTIPGSD 135

Query: 111 --ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS-----SSWNHG 163
             +      +     I  P ++K   GG   G+ +++   +      ++     +++ + 
Sbjct: 136 GLLTSLEQGLVLAQEIGFPIILKATAGGGGKGMKIVQHADAFAKAWDEARREAQAAFGND 195

Query: 164 DQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD 222
              L E+ ++    +   +M D    V  ++           K             I  +
Sbjct: 196 GLYL-EKLIEAPRHIEIQLMADQHGRVVHLSERDCSIQRRHQK----LVEETPSPFITEE 250

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +++ + A      IG  G+   +FL D   R  +++E+N 
Sbjct: 251 LREQMGQAAITGAACIGYEGVGTVEFLVDKH-RNFYFMEMNT 291


>gi|29346114|ref|NP_809617.1| phosphoribosylglycinamide formyltransferase 2 [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|253568464|ref|ZP_04845875.1| phosphoribosylglycinamide formyltransferase 2 [Bacteroides sp.
           1_1_6]
 gi|81587111|sp|Q8A9W1|PURT_BACTN RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|29338008|gb|AAO75811.1| phosphoribosylglycinamide formyltransferase 2 [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|251842537|gb|EES70617.1| phosphoribosylglycinamide formyltransferase 2 [Bacteroides sp.
           1_1_6]
          Length = 388

 Score = 77.5 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 47/255 (18%), Positives = 86/255 (33%), Gaps = 36/255 (14%)

Query: 31  FKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
           F+V  +    ++  V+    PD+    +     E         L +       ++ SA +
Sbjct: 45  FEVFDMLDGEALERVVEKHHPDIIVPEIEAIRTE--------RLYDFEKEGIQVVPSARA 96

Query: 91  MD-----KMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYVIKPLKGGSSLGIIV 143
           ++     K          G+               ++   I  P V+KPL   S  G  +
Sbjct: 97  VNFTMNRKAIRDLAAKELGLKTANYFYAKTLDELKEAAAKIGFPCVVKPLMSSSGKGQSL 156

Query: 144 IKKDQSIPLDLLQSSSWNHGD--QLLIEQYVDGIE----LTCGVMGDASLDVTEIA-VPK 196
           +K    +        S + GD  +L+IE+++        LT       +L    I  V K
Sbjct: 157 VKSADELEHAWEYGCSGSRGDIRELIIEEFIKFDSEITLLTVTQKNGPTLFCPPIGHVQK 216

Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256
              Y               PA I     KE + +A    +A+   G+   +F     +  
Sbjct: 217 GGDY----------RESFQPAHIDPAHLKEAEEMAEKVTRALTGAGLWGVEFFLSHENG- 265

Query: 257 VFWLEINVQP---GM 268
           V++ E++ +P   GM
Sbjct: 266 VYFSELSPRPHDTGM 280


>gi|328956345|ref|YP_004373678.1| carbamoyl-phosphate synthase large subunit [Coriobacterium
           glomerans PW2]
 gi|328456669|gb|AEB07863.1| carbamoyl-phosphate synthase large subunit [Coriobacterium
           glomerans PW2]
          Length = 1107

 Score = 77.5 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 44/278 (15%), Positives = 99/278 (35%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG      L++ G++V  +         D                +  V+A  +P     
Sbjct: 29  SGAQACKVLKEEGYEVILVNSNPATIMTDPGLADRTYVEPVTAEFIERVIARERPCALLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--S 110
            L G  G +  V+     +L+   +      + A     D+    + ++  G+P+     
Sbjct: 89  TLGGQTGLNTAVELAESGVLDRWGVEMIGCDLAAIERGEDRRLFNEAMAEIGLPLARSGY 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  ++    +  P V++P       G  +   ++ +   + Q    +   ++L+E+
Sbjct: 149 AYSVDDAIEIAARVGYPCVLRPSYTLGGAGGGIAHDEEELREIVSQGLELSCAGEVLVEE 208

Query: 171 YVDG-IELTCGVMGDASL-DVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            ++G  E    VM DA+   +   ++   D           +S  V PA+ +    Y+ +
Sbjct: 209 SIEGWKEYEMEVMRDAAGNGIIVCSIENLDPMGVHT----GDSITVAPAQTLSDIEYQRM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + +G   G S   F  +P   ++  +E+N 
Sbjct: 265 RAASLAVLEKVGVETGGSNVQFAVNPRDGRLIIIEMNP 302



 Score = 59.8 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 46/293 (15%), Positives = 100/293 (34%), Gaps = 37/293 (12%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL+DAGF+   +         D D              V  V+   +PD     L G   
Sbjct: 600 ALQDAGFETIMVNCNPETVSTDYDTSDRLYFEPLTYEDVMDVVDVERPDGVIVTLGGQTP 659

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ-- 121
               +   L    +P   +   A  L+ D+ R   ++   G+    + +        Q  
Sbjct: 660 L--KLAGALAASGVPILGTQPEAIDLAEDRERFSALLDELGIRYPKAGMATSCAQAEQVA 717

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCG 180
             I  P +++P       G+++    + +   + +++  +    + ++++++G IE    
Sbjct: 718 DRIGYPLLVRPSYVLGGRGMMIAYDGEHLGAYMREAARVSPDHPVYLDRFLEGAIESDVD 777

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIG 239
            + D         +   +    E    S +S   LPA      +   +++       A+G
Sbjct: 778 ALSDGEQVYIGGILEHIE----EAGIHSGDSATCLPAFSFSDALIARLRQTTRRLALALG 833

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
            RG+   +  +      V+ +E N +   T     P ++   G    +    +
Sbjct: 834 VRGL--VNIQYAIQGETVYVIEANPRASRT----VPFISKATGVPLAKCAARI 880


>gi|255657546|ref|ZP_05402955.1| carbamoyl phosphate synthase large subunit [Clostridium difficile
           QCD-23m63]
          Length = 1068

 Score = 77.5 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 28/224 (12%), Positives = 80/224 (35%), Gaps = 11/224 (4%)

Query: 67  LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV--PVCPSILVNRFTMDSQHLI 124
            +   L    IP   +       + D+ +   ++    +  P    +      ++    +
Sbjct: 644 KLAKFLHEKNIPILGTDFDDIDAAEDREKFDDLLERLDINRPKGKGVWSLNEGIEVAKEL 703

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
             P +++P       G+ +   ++ +   L  +   +H + +LI++Y+ G E+    + D
Sbjct: 704 GYPVLVRPSYVLGGQGMEITYNEEKLSQYLQDAFDRDHKNPVLIDKYLTGREIEVDAICD 763

Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244
               +    +   +       +S  ++T      I  +I +++          +   G+ 
Sbjct: 764 KEDILIPGIMEHLERAGV---HSGDSTTMYPSQNISDEIKEKIVEYTKKIALDLNVLGMV 820

Query: 245 RSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
              F+      +++ +E+N +   T     P ++  +G    +L
Sbjct: 821 NIQFI--EFQNELYIIEVNPRASRT----VPYISKVSGVPIVDL 858



 Score = 63.6 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 49/289 (16%), Positives = 106/289 (36%), Gaps = 39/289 (13%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQID-------VDRSVGL--------------V 45
           G ++E + S   G     +L++ G +V  I+        D+ +                +
Sbjct: 21  GQAAEFDYS---GTQACQSLKEEGIEVVLINSNPATIMTDKEIADKIYIEPLTIEFIEKI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGL-------VQAILELLEIPYTHSGILASALSMDKMRSKQ 98
           +   +PD   ++L G  G+ GL        + IL+   +    + + +     D+   ++
Sbjct: 78  IEKERPD---SLLAGMGGQTGLNLAVELYEKGILDKYGVKIIGTSVESIKKGEDRDIFRE 134

Query: 99  VVSSCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
           V+     PV  S +V      +D    I  P V++P       G  + + ++ +   L  
Sbjct: 135 VMKEINQPVIVSDIVTDLQAGLDYALTIGYPVVVRPAYTLGGTGGGIAENEEELREILSH 194

Query: 157 SSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215
               +   Q+LIE+ + G  E+   V+ D+  +   I V   +       ++  +     
Sbjct: 195 GLQLSPVGQVLIEKSIKGWKEIEYEVIRDSKGN--CIVVCNMENIDPVGVHTGDSIVVAP 252

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              +       +++ +     A+  +G     F  +P S +   +EIN 
Sbjct: 253 TQTLSNKECAMLKKASLDILNAVEVQGGCNVQFALNPHSFEYAVIEINP 301


>gi|215483928|ref|YP_002326153.1| urea carboxylase [Acinetobacter baumannii AB307-0294]
 gi|301347132|ref|ZP_07227873.1| urea carboxylase [Acinetobacter baumannii AB056]
 gi|301510152|ref|ZP_07235389.1| urea carboxylase [Acinetobacter baumannii AB058]
 gi|301594663|ref|ZP_07239671.1| urea carboxylase [Acinetobacter baumannii AB059]
 gi|213987692|gb|ACJ57991.1| urea carboxylase [Acinetobacter baumannii AB307-0294]
          Length = 1201

 Score = 77.5 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 41/257 (15%), Positives = 88/257 (34%), Gaps = 32/257 (12%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     + E   I +             K  ++++     VP+ P    
Sbjct: 77  AIHPGYGFLSENAEFCDLCESQGIAFIGPTSSQMLDFGLKHTARELAIKSNVPLLPGSSL 136

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN----HGDQL 166
           +      +     I  P ++K   GG  +G+ ++  +  +       S           L
Sbjct: 137 LANEAEALAEAARIGYPVMLKSTAGGGGIGMRLVWNETELKDAFQTVSYLAQVNFKDAGL 196

Query: 167 LIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIY 224
            +E++V     +   + GD    V  +           ++  +       PA  +     
Sbjct: 197 YLEKFVQHARHIEVQIFGDGQGQVLALGE-----RDCSVQRRNQKVIEETPAPHLNEQQR 251

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
             +Q++A    Q++  R     +F+ D  +++ ++LE+N             +    G +
Sbjct: 252 DYLQKVAIQLMQSVNYRSAGTVEFVMDTETQEFYFLEVNT-----------RLQVEHGVT 300

Query: 285 ---FR-ELLLWMVEDAS 297
              F  +L+ WMV  AS
Sbjct: 301 EQVFGVDLVEWMVTLAS 317


>gi|254420678|ref|ZP_05034402.1| acetyl-CoA carboxylase, biotin carboxylase [Brevundimonas sp. BAL3]
 gi|196186855|gb|EDX81831.1| acetyl-CoA carboxylase, biotin carboxylase [Brevundimonas sp. BAL3]
          Length = 450

 Score = 77.5 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 86/220 (39%), Gaps = 18/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     I+E   + +         +  DK+ +KQ V   G+PV P    
Sbjct: 77  AIHPGYGFLSENARFAEIVEAHGMTFIGPKPEHIRVMGDKISAKQTVMDAGIPVVPGSKG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
            +      +++   I  P ++K   GG   G+ V      +   +     ++ +      
Sbjct: 137 EVETVEAAIEASKAIGFPLIVKAAAGGGGRGMKVALTADDLVEAVQTAQSEAKAAFGNGA 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+Y+     +   V+ D+  +V  +        S + ++  +      PA +  +  
Sbjct: 197 VYMERYLQKPRHIEIQVIADSHGNVVHLGERD---CSLQRRHQKVLEEAPSPA-LSAEGR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K++      A  AIG  G+   +FL+     + F++E+N 
Sbjct: 253 KKIGETVNKAIAAIGYLGVGTIEFLW--EDGEFFFIEMNT 290


>gi|282910690|ref|ZP_06318493.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282325295|gb|EFB55604.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus WBG10049]
          Length = 1150

 Score = 77.5 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 33/221 (14%), Positives = 74/221 (33%), Gaps = 20/221 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+           I +    +    +  DK++++       +PV P    
Sbjct: 80  AIHPGYGFLSENEQFARRCAEEGIKFIGPHLEHLDMFGDKVKARTTAIKADLPVIPGTDG 139

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
            I       +       P +IK   GG   G+ +++++  +     ++ S         +
Sbjct: 140 PIKSYELAKEFAEEAGFPLMIKATSGGGGKGMRIVREESELEDAFHRAKSEAEKSFGNSE 199

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDI 223
           + IE+Y+D    +   V+GD   ++              ++        V P   +   +
Sbjct: 200 VYIERYIDNPKHIEVQVIGDEHGNIV-----HLFERDCSVQRRHQKVVEVAPSVGLSSTL 254

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +   A      I        +FL      + F++E+N 
Sbjct: 255 RQRICDAAIQLMINIKYVNAGTVEFLV--SGDEFFFIEVNP 293


>gi|254511818|ref|ZP_05123885.1| RimK-like ATP-grasp domain family protein [Rhodobacteraceae
           bacterium KLH11]
 gi|221535529|gb|EEE38517.1| RimK-like ATP-grasp domain family protein [Rhodobacteraceae
           bacterium KLH11]
          Length = 681

 Score = 77.5 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 76/221 (34%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      L+   + +    + A     DK+ SK++    GV   P  + 
Sbjct: 77  AVHPGYGFLSENAKFAEALDAAGVAFVGPPVGAIESMGDKITSKKIAQDAGVSTVPGYMG 136

Query: 114 NRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGD 164
                +      + I  P +IK   GG   G+ +   D              ++S+   D
Sbjct: 137 LIEDAEEAVKISNQIGYPVMIKASAGGGGKGMRIAWNDDEAREGFQSSKNEAANSFG-DD 195

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           ++ IE++V     +   V+ D+  +   +   +        K             + +  
Sbjct: 196 RIFIEKFVTQPRHIEIQVLCDSHGNGIYLGERECSIQRRNQK----VVEEAPSPFLDVAT 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            K +   A    +A+        +F+ D   +  ++LE+N 
Sbjct: 252 RKAMGEQAVALAKAVDYASAGTVEFIVDG-DKNFYFLEMNT 291


>gi|146296639|ref|YP_001180410.1| phosphoribosylaminoimidazole carboxylase ATPase subunit
           [Caldicellulosiruptor saccharolyticus DSM 8903]
 gi|145410215|gb|ABP67219.1| 5-(carboxyamino)imidazole ribonucleotide synthase
           [Caldicellulosiruptor saccharolyticus DSM 8903]
          Length = 384

 Score = 77.5 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 48/187 (25%), Positives = 78/187 (41%), Gaps = 15/187 (8%)

Query: 82  SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGG-SSLG 140
                  +  DK++ KQV+ S G+PV     V  F +        P V K  KGG    G
Sbjct: 99  PSPYCLEIIQDKLKQKQVLQSAGLPVPRFERVESFDISFFENFGFPLVQKATKGGYDGRG 158

Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDF 199
           ++V+K    I   L   S         IE++VD   EL   V  +   DV    V +  F
Sbjct: 159 VVVLKSKDDINKVLKTES--------YIEEFVDVEKELAVIVARNKKGDVVSYPVVEMVF 210

Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
                + +++    ++PA++  DI  E +++A  A +A+   G+   +       RK+  
Sbjct: 211 ----DETANILDILIVPARVEKDIEDEAKKIAIKAVEALQGVGVFGVELFLTK-DRKILI 265

Query: 260 LEINVQP 266
            EI  +P
Sbjct: 266 NEIAPRP 272


>gi|218290464|ref|ZP_03494584.1| carbamoyl-phosphate synthase, large subunit [Alicyclobacillus
           acidocaldarius LAA1]
 gi|218239485|gb|EED06680.1| carbamoyl-phosphate synthase, large subunit [Alicyclobacillus
           acidocaldarius LAA1]
          Length = 1082

 Score = 77.1 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 41/286 (14%), Positives = 99/286 (34%), Gaps = 32/286 (11%)

Query: 25  ALEDAGFKVSQID-------VDRSVGLVLAHLKPDL--AFNVLHGNFGEDGLVQ------ 69
           AL+  G++   I+        D S    L     D+    NV+     E  +VQ      
Sbjct: 591 ALQREGYEAVVINNNPETVSTDFSTSDRLYFEPLDVEDVLNVIDREQPEGVIVQFGGQTA 650

Query: 70  ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHL 123
                 L    +    +   +   + D+ +   +++  G+       V      +++   
Sbjct: 651 INLAGPLADAGVRIFGTSRESIDAAEDREKFDALLTQLGIQRPEGRTVTTVEAAVEAAES 710

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           +  P +++P        + +I     +   + ++   +    +L+++YV+GIE     + 
Sbjct: 711 LGYPVLVRPSYVLGGRAMQIITNTNELLQYMEEAVEVSQQHPVLVDRYVNGIEAEVDAIS 770

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRG 242
           D    +    +   +           +S  V P   +  D+ + ++       Q++  +G
Sbjct: 771 DGETVIIPGIMEHIERAGVHS----GDSIAVYPPQNLTEDVKRIIEDHTIRIAQSLNVKG 826

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           +    F+      +V  +E+N +   T     P ++   G    +L
Sbjct: 827 LMNVQFIVH--DGQVEVIEVNPRSSRT----VPFLSKVTGVPMVQL 866



 Score = 77.1 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 53/286 (18%), Positives = 111/286 (38%), Gaps = 33/286 (11%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------------- 49
           G ++E + +   G     AL++ G++V  ++ + +  +   H+                 
Sbjct: 21  GQAAEFDYA---GTQACQALKEEGYEVVLVNSNPATIMTDEHMADRVYIEPITLDFVTQI 77

Query: 50  ----KPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
               +PD     L G  G +  VQ     +LE   +    + + A   + D+ + +Q++ 
Sbjct: 78  IRKERPDGLLATLGGQTGLNMAVQLAKAGVLEAEGVELLGTPLEAIEKAEDREKFRQLMQ 137

Query: 102 SCGVPVCPSILV-NRFTMDS-QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G PV  S +V N+   D+    +  P +I+P       G  +    +     + +  +
Sbjct: 138 EIGQPVPRSAIVRNQAEADAFAEEVGFPIIIRPAYTLGGTGGGIASNWREYHEIVERGLT 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   Q+L+EQ + G  E+   VM DA    T I V   +       ++  +        
Sbjct: 198 LSPIHQVLVEQSIAGFKEIEYEVMRDADG--TAIVVCNMENMDPVGVHTGDSIVVAPSQT 255

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +  + Y+ ++  +     A+G +G        DP S + + +E+N 
Sbjct: 256 LSDEEYQMLRDASLQIIHALGIQGGCNVQLALDPHSSRYYVIEVNP 301


>gi|182419317|ref|ZP_02950570.1| acetyl-CoA carboxylase, biotin carboxylase [Clostridium butyricum
           5521]
 gi|237667910|ref|ZP_04527894.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Clostridium
           butyricum E4 str. BoNT E BL5262]
 gi|182376957|gb|EDT74528.1| acetyl-CoA carboxylase, biotin carboxylase [Clostridium butyricum
           5521]
 gi|237656258|gb|EEP53814.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Clostridium
           butyricum E4 str. BoNT E BL5262]
          Length = 448

 Score = 77.1 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 74/220 (33%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+       E   I +            DK  +K+ +    VP+ P    
Sbjct: 77  AIHPGYGFLSENTSFARFCEEFNICFIGPHYTVIEKLGDKSNAKETMKEASVPIVPGSAG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGDQ 165
            I     ++     I  P ++K   GG   G+ V      +   +     ++ S+     
Sbjct: 137 EIKSVNESVKVAEKIGYPVIVKASAGGGGKGMRVAGNKDELITAIRECEKEADSYFGNSA 196

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+Y++    +   ++GD   +V  +            K             +  ++ 
Sbjct: 197 VYLEKYLNHTRHVEIQIIGDNYGNVVYLGERDCTIQRRHQK----LVEESPSPALDENLR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K +   A  A +A     +   +FL +      +++E+N 
Sbjct: 253 KRMGEAAVNASKAFKYNSVGTVEFLLNE-DNNFYFMEMNT 291


>gi|146418409|ref|XP_001485170.1| hypothetical protein PGUG_02899 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 404

 Score = 77.1 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 54/281 (19%), Positives = 100/281 (35%), Gaps = 33/281 (11%)

Query: 1   MAVLMGGISSEREVSLSSGKACASA-----LEDAGFKVSQIDVDRSVGLVLAHLKPDLAF 55
           +A+     S+E   SL       SA     L   G +   ID+D  V + + +LK D+  
Sbjct: 34  IAI----YSAEDAESLH----VLSADEAMLLPGVGAQAY-IDIDHVVSVAI-NLKADVVV 83

Query: 56  NVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR 115
              +G   E     A LE   I +      +      K  ++ +  S  VPV P   +  
Sbjct: 84  PG-YGFLSESPQFAAALEKKGIVFAGPTGKSIDTFGLKHSARSLAESNDVPVVPGSGLIT 142

Query: 116 FTMDSQ---HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQLLI 168
              ++Q   + I  P ++K   GG  +G+ V  ++  +     +  S            +
Sbjct: 143 DIAEAQLIANRIGYPVMLKSTAGGGGMGLKVCYREDELSDAFKEVVSRGETLFNNSGAFL 202

Query: 169 EQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD----I 223
           E+YV+ G  +   V G+    V      +        K          P+    +    +
Sbjct: 203 EKYVECGRHIEVQVFGNGQGYVRAFGERECSIQRRHQK-----VIEEAPSPFVENGRTLL 257

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            K++   A     ++  +     +FL D  +   ++LE+N 
Sbjct: 258 RKQLVTCAAHLAASVKYKSAGTVEFLVDDETGSFYFLEMNT 298


>gi|197117949|ref|YP_002138376.1| acetyl-CoA carboxylase biotin carboxylase [Geobacter bemidjiensis
           Bem]
 gi|197087309|gb|ACH38580.1| acetyl-CoA carboxylase, biotin carboxylase [Geobacter bemidjiensis
           Bem]
          Length = 446

 Score = 77.1 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 81/220 (36%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+ +   I E   I +      +  +  DK+ ++Q V   GVP+ P    
Sbjct: 77  AIHPGYGFLSENPIFAEICEKCGITFIGPTAESMRIMGDKISARQAVIKVGVPILPGTKE 136

Query: 114 NRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
               ++        I  P +IK   GG   G+ ++    ++P     + +         +
Sbjct: 137 GVHDVNEAIRVAKEIGFPVIIKATAGGGGRGMKIVHSPAALPNAFATARAEAQSGFGNPE 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+Y +    +   ++ D   +V  +            K      + V       ++ 
Sbjct: 197 VYIERYCESPRHVEIQILADKHGNVVHLGERDCSIQRRHQKVIEEAPSTVT----TPELR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K +   A  A +A+    +   +FL D  +   F++E+N 
Sbjct: 253 KAMGEAAVAAAKAVNYCSVGTMEFLVDK-NNNFFFMEMNT 291


>gi|83646656|ref|YP_435091.1| acetyl/propionyl-CoA carboxylase subunit alpha [Hahella chejuensis
           KCTC 2396]
 gi|83634699|gb|ABC30666.1| Acetyl/propionyl-CoA carboxylase, alpha subunit [Hahella chejuensis
           KCTC 2396]
          Length = 664

 Score = 77.1 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 82/221 (37%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+    A+     + +      A     DK R+K ++    VP+ P    
Sbjct: 77  AIHPGYGFLSENATFAALCAKESLIFIGPPAKAIDAMGDKARAKHLMEQANVPLIPGYHR 136

Query: 114 NRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKK----DQSIPLDLLQSSSWNHGDQ 165
              ++D+      ++  P ++K   GG   G+  ++     D+ +     ++ +      
Sbjct: 137 EDQSVDALRAQAEVVGYPVLLKASAGGGGKGMRAVRSPSEFDEQLASAQREAKNAFGDQT 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDI 223
           +LIE+ ++    +   +  DA  +   +           ++          PA  +  + 
Sbjct: 197 MLIEKLIEQPRHVEVQIFFDAHGEGVYL-----FDRDCSIQRRHQKIIEEAPAPNLADET 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +++   A    +AIG  G    +FL D      +++E+N 
Sbjct: 252 RRKMGETAVACGKAIGYVGAGTVEFLVDKNEN-FYFMEMNT 291


>gi|260662296|ref|ZP_05863192.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus
           fermentum 28-3-CHN]
 gi|260553679|gb|EEX26571.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus
           fermentum 28-3-CHN]
          Length = 1029

 Score = 77.1 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 46/293 (15%), Positives = 107/293 (36%), Gaps = 31/293 (10%)

Query: 22  CASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH-----G---NFGE 64
           C  A+++AG++   I         D   S  L    L  +   NV++     G    FG 
Sbjct: 578 CVQAIQEAGYRAIIINNNPETVSTDFSISDKLYFEPLTIEHVMNVVNLEQPRGVIVQFGG 637

Query: 65  DGLVQAILELL--EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-- 120
              +    EL+   +    + +     + D+ + ++++   G+                 
Sbjct: 638 QTAINLTKELVKRGVKILGTSLQGIEQTEDRHQFEELLKDAGIAQPKGATALNLAEAKVI 697

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
             ++  P +++P        + V++ +  +   + ++        +LI+ YV G+E    
Sbjct: 698 APVVGYPVMVRPSFVLGGRAMAVVENETELVTYVNKALKAAPNQPVLIDHYVAGLECEVD 757

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           ++ D    +    +   +       +S  +     P ++     KE+ + A    Q + C
Sbjct: 758 ILSDGHDVLIPGIMEHLEGSGI---HSGDSMALYPPVRLTSAQQKEIVQTAIAIGQRVHC 814

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            G+    F+    + +V+ +E+N +   T     P M+   GY   +L   ++
Sbjct: 815 LGMMNIQFIV---ADRVYVIEVNPRASRT----VPFMSKVTGYHLAKLATRLI 860



 Score = 74.8 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 46/267 (17%), Positives = 98/267 (36%), Gaps = 30/267 (11%)

Query: 26  LEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFNVLHGNFGE 64
           L++ G++V  ++ +                      S+  ++    PD     L G  G 
Sbjct: 37  LKEEGYQVVLVNSNPATIMTDDQIADQVYLEPLTVPSLTEIIELEHPDALLPTLGGQTGL 96

Query: 65  DGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
           +  ++     +L    +    + +     + D+ + KQ++   G PV  S+ V+      
Sbjct: 97  NLAIELDQAGVLNKFGVTLLGTDLQTIQEAEDREQFKQLMEEIGQPVPASLTVHTVEAAC 156

Query: 121 Q--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IEL 177
           Q       P +++P       G  +    + + L   +  + +   + LIEQ + G  E+
Sbjct: 157 QFAEEAGYPVIVRPAFTLGGTGGGIANDQEELELIAKRGLAQSPVTECLIEQSIAGLKEI 216

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
              VM DA+ D  EI+V   + +     ++  +        +P   Y+ ++  A     A
Sbjct: 217 EFEVMRDANGD--EISVCCMENFDPVGIHTGDSIVVAPNQTLPDVQYQRLRSAALAIVAA 274

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINV 264
           +   G         P+S   + +E+N 
Sbjct: 275 LKIEGGCNVQLAQSPISDDYYVIEVNP 301


>gi|300775896|ref|ZP_07085756.1| acetyl-CoA carboxylase subunit A [Chryseobacterium gleum ATCC
           35910]
 gi|300505446|gb|EFK36584.1| acetyl-CoA carboxylase subunit A [Chryseobacterium gleum ATCC
           35910]
          Length = 468

 Score = 77.1 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 77/220 (35%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     I +   I +  +         DK  +K  + + GVP  P    
Sbjct: 94  AIHPGYGFLSENANFSRICQKNGIKFIGASPEQIEKMGDKANAKATMKAAGVPCVPGSDG 153

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGDQ 165
            I      +        P +IK   GG   G+  + K + +       + ++ +      
Sbjct: 154 LIESYEHAVKIAEETGYPVMIKATAGGGGKGMRAVWKAEDLKDHWESAIQEAVAAFGNGG 213

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+ ++    +   V GD       ++           K     +       +  ++ 
Sbjct: 214 MYMEKLIEEPRHIEIQVAGDQFGKACHLSERDCSVQRRNQK----LTEETPSPFMTDELR 269

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +++   A  A + IG  G+   +FL D   R  +++E+N 
Sbjct: 270 EKMGAAAVKAAEFIGYEGVGTIEFLVDKH-RNFYFMEMNT 308


>gi|15612076|ref|NP_223728.1| biotin carboxylase [Helicobacter pylori J99]
 gi|4155591|gb|AAD06583.1| BIOTIN CARBOXYLASE [Helicobacter pylori J99]
          Length = 455

 Score = 77.1 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 38/225 (16%), Positives = 77/225 (34%), Gaps = 14/225 (6%)

Query: 49  LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
            + D  F   +G   E+     I     + +        AL  DK ++K V+   G+PV 
Sbjct: 84  FEADAIFPG-YGFLSENQNFVEICSHHSLEFIGPSAKVMALMSDKAKAKIVMKEAGMPVI 142

Query: 109 PS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSW 160
                 +   +   +    I  P +IK   GG   G+ V+     +         ++ S 
Sbjct: 143 EGSDGLLKSYQEAEEIADKIGYPVIIKAAAGGGGRGMRVVGDKSKLKNLYLAAETEALSA 202

Query: 161 NHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI 219
                + +E+++     +   ++ D   +V  +          + K             +
Sbjct: 203 FGDGSVYLEKFINKPKHIEVQILADKHGNVIHVGERDCSVQRRQQKLI----EETPAVVL 258

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              + K +   A  A + IG  G    +FL D   +  +++E+N 
Sbjct: 259 EESVRKRLLETAIKAAKYIGYVGAGTFEFLLDSNMKDFYFMEMNT 303


>gi|332535051|ref|ZP_08410865.1| methylcrotonyl-CoA carboxylase biotin-containing subunit
           [Pseudoalteromonas haloplanktis ANT/505]
 gi|332035520|gb|EGI72015.1| methylcrotonyl-CoA carboxylase biotin-containing subunit
           [Pseudoalteromonas haloplanktis ANT/505]
          Length = 677

 Score = 77.1 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 82/221 (37%), Gaps = 20/221 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       E   I +      +      K R+K+++++  VP+ P    
Sbjct: 81  CIHPGYGFLSENSEFAKACEANNIAFIGPPASSIEAIGSKTRAKEIMAAANVPLVPGYYG 140

Query: 114 NRFT----MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGDQ 165
           ++            I  P +IK   GG   G+ V++K +     L     ++ +    D 
Sbjct: 141 DKQDPAFLQSEAEKIGYPVLIKAAFGGGGKGMRVVQKAKDFMSALQGAQREAIAGFGNDL 200

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           +L+E+YV+    +   V  D   +   +           L+          PA  +  ++
Sbjct: 201 VLLERYVNQPRHVEVQVFADNYGNCVYL-----GDRDCSLQRRHQKVIEEAPAPGLSDEL 255

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            KE+   A     AI  RG    +FL      + F++E+N 
Sbjct: 256 RKEMGEAAVRCALAINYRGAGTVEFLL--CGDEFFFMEMNT 294


>gi|224006856|ref|XP_002292388.1| hypothetical protein THAPSDRAFT_263480 [Thalassiosira pseudonana
           CCMP1335]
 gi|220972030|gb|EED90363.1| hypothetical protein THAPSDRAFT_263480 [Thalassiosira pseudonana
           CCMP1335]
          Length = 683

 Score = 77.1 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 52/257 (20%), Positives = 98/257 (38%), Gaps = 26/257 (10%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVN 114
           +G   E+GL    +ELL++ +      A     DK+ SK +  + GV   P     +   
Sbjct: 81  YGFLSENGLFAKRVELLDVRFIGPSTHAIQSLGDKIESKLLADAAGVSTIPGFNGVVTSP 140

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGDQLLIEQ 170
              +   H I  P +IK   GG   G+ +   D  +         ++ S+   D+LL+E+
Sbjct: 141 AHAIQIAHEIGYPVMIKASSGGGGKGMRICYTDAQVEEGYRLGSAEAKSFFGDDRLLVEK 200

Query: 171 YV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQ 228
           YV D   +   V+   +    E+ +         ++  +       P   +     +E+ 
Sbjct: 201 YVEDPHHIEIQVLSGKNPKTGELDILCFAERECSIQRRNQKVIEESPSPHLHPSTRREMI 260

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAYAGY 283
           R      + +        +FL D   +  ++LE+N       P         EM +  GY
Sbjct: 261 RQVKSLVREVNYESAGTVEFLVDK-DQNFYFLEMNTRLQVEHP-------VTEMISGDGY 312

Query: 284 ---SFRELLLWMVEDAS 297
              ++ +L+  M+E A+
Sbjct: 313 HSGNYVDLVHGMLEVAA 329


>gi|254442918|ref|ZP_05056394.1| acetyl-CoA carboxylase, biotin carboxylase [Verrucomicrobiae
           bacterium DG1235]
 gi|198257226|gb|EDY81534.1| acetyl-CoA carboxylase, biotin carboxylase [Verrucomicrobiae
           bacterium DG1235]
          Length = 451

 Score = 77.1 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 76/220 (34%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC---PS 110
            +H  +G   E+       E   I +      +     DK  +K+ V    VPVC     
Sbjct: 76  AIHPGYGFLSENADFAEQCESCNIKFIGPSAESIRKMGDKAVAKETVQKVKVPVCGGSDG 135

Query: 111 ILVNRFTMDS-QHLISPPYVIKPLKGGSSLGIIVIKKD----QSIPLDLLQSSSWNHGDQ 165
           ++ +          +  P +IK + GG   G+ +   D    +   +   ++        
Sbjct: 136 VIASEEEASKIAKKVGYPVIIKAVAGGGGKGMRIAHNDVSLRKEFHIARNEADKAFGNGD 195

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+Y+ +   +   V+ D+  +V  +            K             +   + 
Sbjct: 196 VYVEKYIQNPRHIEFQVLADSHGNVVHLGERDCSVQRRHQK----LIEEAPSPFLSQKLR 251

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           KE+   A  A +A    G    +FL D    K ++LE+N 
Sbjct: 252 KEMGDAAVRATKAANYEGAGTIEFLVDDK-GKYYFLEMNT 290


>gi|184155204|ref|YP_001843544.1| carbamoyl-phosphate synthase large subunit [Lactobacillus fermentum
           IFO 3956]
 gi|183226548|dbj|BAG27064.1| carbamoyl-phosphate synthase large subunit [Lactobacillus fermentum
           IFO 3956]
          Length = 1029

 Score = 77.1 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 46/293 (15%), Positives = 107/293 (36%), Gaps = 31/293 (10%)

Query: 22  CASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH-----G---NFGE 64
           C  A+++AG++   I         D   S  L    L  +   NV++     G    FG 
Sbjct: 578 CVQAIQEAGYRAIIINNNPETVSTDFSISDKLYFEPLTIEHVMNVVNLEQPRGVIVQFGG 637

Query: 65  DGLVQAILELL--EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-- 120
              +    EL+   +    + +     + D+ + ++++   G+                 
Sbjct: 638 QTAINLTKELVKRGVKILGTSLQGIEQTEDRHQFEELLKDAGIAQPKGATALNLAEAKVI 697

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
             ++  P +++P        + V++ +  +   + ++        +LI+ YV G+E    
Sbjct: 698 APVVGYPVMVRPSFVLGGRAMAVVENETELVTYVNKALKAAPNQPVLIDHYVAGLECEVD 757

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           ++ D    +    +   +       +S  +     P ++     KE+ + A    Q + C
Sbjct: 758 ILSDGHDVLIPGIMEHLEGSGI---HSGDSMALYPPVRLTSAQQKEIVQTAIAIGQRVHC 814

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            G+    F+    + +V+ +E+N +   T     P M+   GY   +L   ++
Sbjct: 815 LGMMNIQFIV---ADRVYVIEVNPRASRT----VPFMSKVTGYHLAKLATRLI 860



 Score = 74.8 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 46/267 (17%), Positives = 99/267 (37%), Gaps = 30/267 (11%)

Query: 26  LEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFNVLHGNFGE 64
           L++ G++V  ++ +                      S+  ++    PD     L G  G 
Sbjct: 37  LKEEGYQVVLVNSNPATIMTDDQIADQVYLEPLTVPSLTEIIELEHPDALLPTLGGQTGL 96

Query: 65  DGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
           +  ++     +L+   +    + +     + D+ + KQ++   G PV  S+ V+      
Sbjct: 97  NLAIELDQAGVLKKFGVTLLGTDLQTIQEAEDREQFKQLMEEIGQPVPASLTVHTVEAAC 156

Query: 121 Q--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IEL 177
           Q       P +++P       G  +    + + L   +  + +   + LIEQ + G  E+
Sbjct: 157 QFAEEAGYPVIVRPAFTLGGTGGGIANDQEELELIAKRGLAQSPVTECLIEQSIAGLKEI 216

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
              VM DA+ D  EI+V   + +     ++  +        +P   Y+ ++  A     A
Sbjct: 217 EFEVMRDANGD--EISVCCMENFDPVGIHTGDSIVVAPNQTLPDVQYQRLRSAALAIVAA 274

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINV 264
           +   G         P+S   + +E+N 
Sbjct: 275 LKIEGGCNVQLAQSPISDDYYVIEVNP 301


>gi|134298153|ref|YP_001111649.1| carbamoyl phosphate synthase large subunit [Desulfotomaculum
           reducens MI-1]
 gi|134050853|gb|ABO48824.1| carbamoyl-phosphate synthase large subunit [Desulfotomaculum
           reducens MI-1]
          Length = 1074

 Score = 77.1 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 57/315 (18%), Positives = 122/315 (38%), Gaps = 39/315 (12%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI---------DVD------------RSVGLV 45
           G ++E + +   G     AL + G +V  +         D D            +S+  +
Sbjct: 21  GQAAEFDYA---GTQACKALREEGIRVVLVNSNPATIMTDADIADVVYVEPLTWQSIEKI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +A  KPD     L G  G +  V    Q IL+   +    + +     + D+   +  + 
Sbjct: 78  IAKEKPDGLLPTLGGQTGLNMAVELAEQGILDKYGVTLLGTTLETIKRAEDRELFRATML 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G P+  S + +     ++  + I  P +++P       G  ++K ++ +     +   
Sbjct: 138 EIGEPIPESTIASTLEECIEFANKIGYPLIVRPAYTLGGTGGGIVKDEKELTATCHRGLK 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +  +Q+L+E+ V G  E+   VM D + +   I   ++      +   + +S  V P++
Sbjct: 198 MSMINQVLLERSVAGWKEIEYEVMRDNADNCITICNMEN---IDPVGVHTGDSIVVAPSQ 254

Query: 219 -IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
            +    Y+ ++  +    +A+   G     F  DP S +   +E+N  P ++  S     
Sbjct: 255 TLADREYQMLRTASLKIIRALKVAGGCNVQFALDPHSMEYIVIEVN--PRVSRSS--ALA 310

Query: 278 AAYAGYSFRELLLWM 292
           +   GY   +L   +
Sbjct: 311 SKATGYPIAKLAAKI 325



 Score = 71.7 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 27/200 (13%), Positives = 70/200 (35%), Gaps = 9/200 (4%)

Query: 68  VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLIS 125
           +   L  + +    + I     + D+ + ++++   G+P                   + 
Sbjct: 644 LAGDLAEMGVKILGTPIEGIDAAEDREKFEKLLKGLGIPQTEGKTATNVEEAQKIAAELG 703

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            P +++P        + ++  +  +   +  +   +    +L+++YV G E+    +GD 
Sbjct: 704 FPVLVRPSYVLGGRAMEIVYNEDQLLKYMSTAVQVSPKHPVLVDKYVRGKEVEVDAIGDG 763

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGIS 244
                 I +P    +       S +S  V P + +     ++V        + +   G+ 
Sbjct: 764 E----NIFIPGIMEHIERAGVHSGDSIAVYPPQSLNQQEMEQVVDYTLRIGKGLKICGLM 819

Query: 245 RSDFLFDPLSRKVFWLEINV 264
              ++       VF LE+N 
Sbjct: 820 NIQYVVGEEG--VFVLEVNP 837


>gi|315505635|ref|YP_004084522.1| carbamoyl-phosphate synthase l chain ATP-binding protein
           [Micromonospora sp. L5]
 gi|315412254|gb|ADU10371.1| Carbamoyl-phosphate synthase L chain ATP-binding protein
           [Micromonospora sp. L5]
          Length = 514

 Score = 77.1 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 78/221 (35%), Gaps = 21/221 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   ED     I     + +        A   DK  ++ ++S  G+P+ P  + 
Sbjct: 77  AVHPGYGFLSEDADFAEICAENGLVFVGPPPQVMAALADKSTARALMSRAGLPLPPGSVR 136

Query: 114 N----RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS-----SWNHGD 164
                    +    +  P ++K   GG   G+ V++    +P    ++      ++   D
Sbjct: 137 TLPTVAEAQEVAAEVGYPVIVKAAAGGGGRGMTVVRSAAELPRAYARTRAAAQVAFG-DD 195

Query: 165 QLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
           ++ +E+Y+ D   +   V+ D   +               ++          PA  +   
Sbjct: 196 RVYVERYLADARHVEVQVLCDGHGNGV-----HLGTRDCSVQRRHQKLIEEAPAPALRQA 250

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
               V  +A     ++G  G    +FL D   R   +LEIN
Sbjct: 251 TLDTVAEVALRGALSVGFTGAGTVEFLVDEAER-CHFLEIN 290


>gi|257421903|ref|ZP_05598893.1| pyruvate carboxylase [Enterococcus faecalis X98]
 gi|257163727|gb|EEU93687.1| pyruvate carboxylase [Enterococcus faecalis X98]
          Length = 1142

 Score = 77.1 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 42/278 (15%), Positives = 94/278 (33%), Gaps = 29/278 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59
           +A+     ++E E S+   KA  + L   G K  +  +D  ++  +      D     +H
Sbjct: 28  VAI----YAAEDEYSVHRFKADEAYLVGKGKKPIEAYLDIENIIQIAKKSGAD----AIH 79

Query: 60  GNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----IL 112
             +G   E+       E   I +         +  DK+++K+   + G+   P     + 
Sbjct: 80  PGYGFLSENLRFAERCEEEGIIFVGPKTHHLDIFGDKIKAKEAAVAAGIASIPGSDGPVA 139

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGDQLLI 168
                +        P +IK   GG   G+ V    +           ++ +    D++ +
Sbjct: 140 TVEEVVAFGETHGFPIMIKAALGGGGRGMRVAHDAKEAREGYERAKSEAKAAFGSDEVYV 199

Query: 169 EQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKE 226
           E+Y+ +   +   ++GD   +V              ++        V P   +  +    
Sbjct: 200 EKYISNPKHIEVQILGDHHGNVL-----HLFERDCSVQRRHQKVVEVAPCVSMNEEQRAA 254

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +   A      +G       +FL      + +++E+N 
Sbjct: 255 ICSAAVQLMAHVGYVNAGTVEFLV--EGDQFYFIEVNP 290


>gi|302562451|ref|ZP_07314793.1| pyruvate carboxylase [Streptomyces griseoflavus Tu4000]
 gi|302480069|gb|EFL43162.1| pyruvate carboxylase [Streptomyces griseoflavus Tu4000]
          Length = 1124

 Score = 77.1 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 39/216 (18%), Positives = 75/216 (34%), Gaps = 17/216 (7%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV----CPSILVN 114
           +G   E+  +    E   I +   G     L+ +K R+       GVPV     PS  V+
Sbjct: 83  YGFLSENPELARACEEAGITFVGPGPEILELTGNKARAVAAAREAGVPVLGSSAPSTDVD 142

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQLLIEQ 170
              + +   +  P  +K + GG   G+  ++    +   +  +S           + +E+
Sbjct: 143 EL-VRAADDVGFPVFVKAVAGGGGRGMRRVEDPAQLREAIEAASREAASAFGDPTVFLEK 201

Query: 171 Y-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQ 228
             V+   +   ++ D   DV              ++        + PA  +  ++   + 
Sbjct: 202 AVVEPRHIEVQILADGQGDVI-----HLFERDCSVQRRHQKVIELAPAPNLDPELRDRIC 256

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             A    + IG R     +FL D     VF  E+N 
Sbjct: 257 ADAVNFARQIGYRNAGTVEFLLDRDGNHVFI-EMNP 291


>gi|227514706|ref|ZP_03944755.1| glutamine-hydrolyzing carbamoyl-phosphate synthase [Lactobacillus
           fermentum ATCC 14931]
 gi|227086910|gb|EEI22222.1| glutamine-hydrolyzing carbamoyl-phosphate synthase [Lactobacillus
           fermentum ATCC 14931]
          Length = 1029

 Score = 77.1 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 46/293 (15%), Positives = 107/293 (36%), Gaps = 31/293 (10%)

Query: 22  CASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH-----G---NFGE 64
           C  A+++AG++   I         D   S  L    L  +   NV++     G    FG 
Sbjct: 578 CVQAIQEAGYRAIIINNNPETVSTDFSISDKLYFEPLTIEHVMNVVNLEQPRGVIVQFGG 637

Query: 65  DGLVQAILELL--EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-- 120
              +    EL+   +    + +     + D+ + ++++   G+                 
Sbjct: 638 QTAINLTKELVKRGVKILGTSLQGIEQTEDRHQFEELLKDAGIAQPKGATALNLAEAKVI 697

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
             ++  P +++P        + V++ +  +   + ++        +LI+ YV G+E    
Sbjct: 698 APVVGYPVMVRPSFVLGGRAMAVVENETELVTYVNKALKAAPNQPVLIDHYVAGLECEVD 757

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           ++ D    +    +   +       +S  +     P ++     KE+ + A    Q + C
Sbjct: 758 ILSDGHDVLIPGIMEHLEGSGI---HSGDSMALYPPVRLTSAQQKEIVQTAIAIGQRVHC 814

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            G+    F+    + +V+ +E+N +   T     P M+   GY   +L   ++
Sbjct: 815 LGMMNIQFIV---ADRVYVIEVNPRASRT----VPFMSKVTGYHLAKLATRLI 860



 Score = 74.8 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 46/267 (17%), Positives = 99/267 (37%), Gaps = 30/267 (11%)

Query: 26  LEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFNVLHGNFGE 64
           L++ G++V  ++ +                      S+  ++    PD     L G  G 
Sbjct: 37  LKEEGYQVVLVNSNPATIMTDDQIADQVYLEPLTVPSLTEIIELEHPDALLPTLGGQTGL 96

Query: 65  DGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
           +  ++     +L+   +    + +     + D+ + KQ++   G PV  S+ V+      
Sbjct: 97  NLAIELDQAGVLKKFGVTLLGTDLQTIQEAEDREQFKQLMEEIGQPVPASLTVHTVEAAC 156

Query: 121 Q--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IEL 177
           Q       P +++P       G  +    + + L   +  + +   + LIEQ + G  E+
Sbjct: 157 QFAEEAGYPVIVRPAFTLGGTGGGIANDQEELELIAKRGLAQSPVTECLIEQSIAGLKEI 216

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
              VM DA+ D  EI+V   + +     ++  +        +P   Y+ ++  A     A
Sbjct: 217 EFEVMRDANGD--EISVCCMENFDPVGIHTGDSIVVAPNQTLPDVQYQRLRSAALAIVAA 274

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINV 264
           +   G         P+S   + +E+N 
Sbjct: 275 LKIEGGCNVQLAQSPISDDYYVIEVNP 301


>gi|196248043|ref|ZP_03146745.1| carbamoyl-phosphate synthase, large subunit [Geobacillus sp.
           G11MC16]
 gi|196212827|gb|EDY07584.1| carbamoyl-phosphate synthase, large subunit [Geobacillus sp.
           G11MC16]
          Length = 1042

 Score = 77.1 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 55/286 (19%), Positives = 104/286 (36%), Gaps = 33/286 (11%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI----------DVDRS-----------VGLV 45
           G ++E + S   G     AL++ G++V  +          DV              +  +
Sbjct: 21  GQAAEFDYS---GTQACIALKEEGYRVILVNNNPATIMTDDVHADAVYFEPLTVDAIEAI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +A  +PD       G  G +   Q     +LE   +    + I A     D+   + ++ 
Sbjct: 78  IAKERPDGLLATFGGQTGLNLAFQLYEAGVLEKYGVRLLGTPIEAIKRGEDREAFRALMH 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G PV  S +V   +  +     I  P +I+P       G  + +  +     + +  +
Sbjct: 138 ELGEPVPESEIVTNVKEAVAFAEQIGFPIIIRPAYTLGGTGGGIAENMEQFIALVEKGLA 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   Q LIE+ V G  E+   VM D     T I V   +       ++  +        
Sbjct: 198 ESPIRQCLIERSVAGFKEIEYEVMRDQ--SNTCITVCNMENVDPVGVHTGDSIVVAPSQT 255

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +  + Y+ ++  A     A+G  G     F  DP S++ + +E+N 
Sbjct: 256 LTDEEYQMLRSSAVKIISALGIIGGCNIQFALDPNSKQYYLIEVNP 301



 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 40/228 (17%), Positives = 85/228 (37%), Gaps = 22/228 (9%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYV 129
           LE   +              D+ R  Q++    +P  P ++ N           I  P +
Sbjct: 650 LEEAGVRLLGVTYDIIDQLEDRDRFYQLLEELDIPHVPGLMANDAEELVAKAAEIGYPVL 709

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS--- 186
           ++P       G+ +I+ +  +   L++     +   +LI+ Y+DG E    ++ D +   
Sbjct: 710 LRPSYVIGGRGMFIIRSEAQL-AALIEQGELTY--PILIDAYLDGKEAEADIVTDGTDIL 766

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISR 245
           L      V K+  +S        +S   LPA+ +  +    +   A    + +G +GI  
Sbjct: 767 LPTIIEHVEKAGVHS-------GDSYAWLPAQTLTEEERANIVDYARRIAKKLGFKGIMN 819

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
             ++       V+ LE+N +   T     P ++   G    ++   ++
Sbjct: 820 IQYVI--ADGNVYVLEVNPRASRT----VPIVSKTTGVPLAQIATKLL 861


>gi|124268391|ref|YP_001022395.1| putative biotin carboxylase protein [Methylibium petroleiphilum
           PM1]
 gi|124261166|gb|ABM96160.1| putative biotin carboxylase protein [Methylibium petroleiphilum
           PM1]
          Length = 449

 Score = 77.1 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 36/222 (16%), Positives = 81/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H  +G   E+      ++     +      +  +  DK+ +KQ +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAERVQQSGFTFIGPTPESIRVMGDKVAAKQAMIKSGVPTVPGAEG 136

Query: 113 ----VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
                 +  +     I  P +IK   GG   G+ V+  + ++   +     ++ +     
Sbjct: 137 ALPDDPKEIIRQARAIGYPVIIKAAGGGGGRGMRVVHTEAALIHAVQTTRAEAGAAFGNP 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E++++    +   V+ D   +   +            K          PA  IP  
Sbjct: 197 TVYMEKFLENPRHIEIQVLADTHRNAVWLGERDCSMQRRHQK-----IIEEAPAPGIPRR 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + + +      A + IG RG    +FL+   + + +++E+N 
Sbjct: 252 VIERIGERCVAACKKIGYRGAGTFEFLY--ENGEFYFIEMNT 291


>gi|256853816|ref|ZP_05559181.1| pyruvate carboxylase [Enterococcus faecalis T8]
 gi|256710759|gb|EEU25802.1| pyruvate carboxylase [Enterococcus faecalis T8]
          Length = 1142

 Score = 77.1 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 42/278 (15%), Positives = 93/278 (33%), Gaps = 29/278 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59
           +A+     ++E E S+   KA  + L   G K  +  +D  ++  +      D     +H
Sbjct: 28  VAI----YAAEDEYSVHRFKADEAYLVGKGKKPIEAYLDIENIIQIAKKSGAD----AIH 79

Query: 60  GNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----IL 112
             +G   E+       E   I +         +  DK+++K+   + G+   P     + 
Sbjct: 80  PGYGFLSENLRFAERCEEEGIIFVGPKTHHLDIFGDKIKAKEAAVAAGIASIPGSDGPVA 139

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGDQLLI 168
                         P +IK   GG   G+ V    +           ++ +    D++ +
Sbjct: 140 TVEEVAAFGETHGFPIMIKAALGGGGRGMRVAHDAKEAREGYERAKSEAKAAFGSDEVYV 199

Query: 169 EQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKE 226
           E+Y+ +   +   ++GD   +V              ++        V P   +  +    
Sbjct: 200 EKYISNPKHIEVQILGDHHGNVL-----HLFERDCSVQRRHQKVVEVAPCVSMNEEQRAA 254

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +   A      +G       +FL      + +++E+N 
Sbjct: 255 ICSAAVQLMAHVGYVNAGTVEFLV--EGDQFYFIEVNP 290


>gi|126701217|ref|YP_001090114.1| carbamoyl phosphate synthase large subunit [Clostridium difficile
           630]
 gi|115252654|emb|CAJ70497.1| Carbamoyl-phosphate synthase large chain 2 [Clostridium difficile]
          Length = 1068

 Score = 77.1 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 28/224 (12%), Positives = 81/224 (36%), Gaps = 11/224 (4%)

Query: 67  LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV--PVCPSILVNRFTMDSQHLI 124
            +   L    IP   +       + D+ +   ++    +  P    +      ++  + +
Sbjct: 644 KLAKFLHEKNIPILGTDFDDIDAAEDREKFDDLLERLDINRPKGKGVWSLNEGIEVANEL 703

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
             P +++P       G+ +   ++ +   L  +   +H + +LI++Y+ G E+    + D
Sbjct: 704 GYPVLVRPSYVLGGQGMEITYNEEKLSQYLQDAFDRDHKNPVLIDKYLTGREIEVDAICD 763

Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244
               +    +   +       +S  ++T      I  +I +++          +   G+ 
Sbjct: 764 KEDILIPGIMEHLERAGV---HSGDSTTMYPSQNISDEIKEKIVEYTKKIALDLNVLGMV 820

Query: 245 RSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
              F+      +++ +E+N +   T     P ++  +G    +L
Sbjct: 821 NIQFI--EFQNELYIIEVNPRASRT----VPYISKVSGVPIVDL 858



 Score = 62.8 bits (152), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 50/289 (17%), Positives = 105/289 (36%), Gaps = 39/289 (13%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQID-------VDRSVGL--------------V 45
           G ++E + S   G     +L++ G +V  I+        D+ V                +
Sbjct: 21  GQAAEFDYS---GTQACQSLKEEGIEVVLINSNPATIMTDKEVADKIYIEPLTIEFIEKI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGL-------VQAILELLEIPYTHSGILASALSMDKMRSKQ 98
           +   +PD   ++L G  G+ GL        + IL+   +    + + +     D+   ++
Sbjct: 78  IEKERPD---SLLAGMGGQTGLNLAVELYEKGILDKYGVKIIGTSVESIKKGEDRDIFRE 134

Query: 99  VVSSCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
           V+     PV  S +V      +D    I  P V++P       G  +   ++ +   L  
Sbjct: 135 VMKEINQPVIVSDIVTDLQAGLDYALTIGYPVVVRPAYTLGGTGGGIADNEEELREILSH 194

Query: 157 SSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215
               +   Q+LIE+ + G  E+   V+ D+  +   I V   +       ++  +     
Sbjct: 195 GLQLSPVGQVLIEKSIKGWKEIEYEVIRDSKGN--CIVVCNMENIDPVGVHTGDSIVVAP 252

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              +       +++ +     A+  +G     F  +P S +   +EIN 
Sbjct: 253 TQTLSNKECAMLKKASLDILNAVEVQGGCNVQFALNPHSFEYAVIEINP 301


>gi|86750137|ref|YP_486633.1| acetyl-CoA carboxylase biotin carboxylase subunit [Rhodopseudomonas
           palustris HaA2]
 gi|86573165|gb|ABD07722.1| acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha /
           biotin carboxylase [Rhodopseudomonas palustris HaA2]
          Length = 451

 Score = 77.1 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 75/220 (34%), Gaps = 18/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     IL    + +         L  DK+ +K+     G+PV P    
Sbjct: 77  AVHPGYGFLSENARFAEILADHNLHFIGPKAEHIRLMGDKIEAKKTARRLGIPVVPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
            +  +   M     I  P ++K   GG   G+ V    + + + +     ++ +      
Sbjct: 137 AVGPDDDAMSIAREIGFPVLVKAAAGGGGRGMKVAHTAEDLSMAISTAGNEAKAAFGDAS 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+Y+     +   V+GD       +            K             I  +  
Sbjct: 197 VYLEKYLQKPRHIEIQVLGDGRGGAIHLGERDCSLQRRHQK----VWEESPSPVISAEAR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +  +   A Q +   G+   +FL+     + +++E+N 
Sbjct: 253 ARIGGICAKAMQDMSYVGVGTIEFLY--EDGEFYFIEMNT 290


>gi|91774380|ref|YP_544136.1| biotin carboxylase / acetyl-coenzyme A carboxylase carboxyl
           transferase subunit alpha [Methylobacillus flagellatus
           KT]
 gi|91708367|gb|ABE48295.1| acetyl-CoA carboxylase carboxyltransferase subunit alpha
           [Methylobacillus flagellatus KT]
          Length = 449

 Score = 77.1 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 35/222 (15%), Positives = 79/222 (35%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H  +G   E+      +E     +         L  DK+ +K  + + GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAERVEQSGFTFIGPRAETIRLMGDKVSAKDTMKAAGVPCVPGSEG 136

Query: 113 ----VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
                N   +     I  P +IK   GG   G+ V+  + ++   +     ++ +     
Sbjct: 137 ALGDDNDEILRIAKDIGYPVIIKAAGGGGGRGMRVVHTEAALLNAVSMTKAEAQAAFGNP 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLD 222
            + +E++++    +   ++ D   +   +            K          PA  I   
Sbjct: 197 MVYMEKFLEQPRHIEIQILADQHGNAIYLGERDCSMQRRHQK-----VLEEAPAFGISPQ 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +++      A + I  RG    +FL+   + + +++E+N 
Sbjct: 252 LREKIGTACAEACKRINYRGAGTFEFLY--ENGEFYFIEMNT 291


>gi|27467731|ref|NP_764368.1| pyruvate carboxylase [Staphylococcus epidermidis ATCC 12228]
 gi|27315275|gb|AAO04410.1|AE016746_200 pyruvate carboxylase [Staphylococcus epidermidis ATCC 12228]
          Length = 1153

 Score = 77.1 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 32/221 (14%), Positives = 77/221 (34%), Gaps = 20/221 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+           I +    +    +  DK++++    +  +PV P    
Sbjct: 84  AIHPGYGFLSENEQFARRCAEEGIKFIGPHLEHLDMFGDKVKARTTAINANLPVIPGTDG 143

Query: 114 NRFTMDSQHLI----SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
              + ++          P +IK   GG   G+ ++++   +     ++ S         +
Sbjct: 144 PIESFEAAEQFANEAGYPLMIKATSGGGGKGMRIVRESSELEDAFHRAKSEAEKSFGNSE 203

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDI 223
           + IE+Y+D    +   V+GD   ++  +           ++        V P   +   +
Sbjct: 204 VYIERYIDNPKHIEVQVIGDEFGNIIHLYE-----RDCSVQRRHQKVVEVAPSVGLSNKL 258

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +   A    + I        +FL      + F++E+N 
Sbjct: 259 RERICDAAIQLMENIKYVNAGTVEFLV--SGDEFFFIEVNP 297


>gi|108804314|ref|YP_644251.1| carbamoyl-phosphate synthase large subunit [Rubrobacter
           xylanophilus DSM 9941]
 gi|122975987|sp|Q1AVY9|CARB_RUBXD RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|108765557|gb|ABG04439.1| carbamoyl-phosphate synthase large subunit [Rubrobacter
           xylanophilus DSM 9941]
          Length = 1054

 Score = 77.1 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 55/289 (19%), Positives = 103/289 (35%), Gaps = 38/289 (13%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI---------DVD------------RSVGLV 45
           G ++E + S   G     AL++ G++V  +         D +             +V  V
Sbjct: 21  GQAAEFDYS---GTQACRALKEEGYRVILVNSNPATIMTDPEMADTTYIEPLRAETVAEV 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   +PD     L G    +  V+     +LE   +    + I +   + D+   ++ + 
Sbjct: 78  IRRERPDALLPTLGGQTALNLAVELSEAGVLEEYGVQLLGASIPSIQKAEDRQLFREAME 137

Query: 102 SCGVPVCPSILVNR--FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G+ V  S  V       +    I  P +I+P       G  V +   ++   +     
Sbjct: 138 RIGLRVPESRTVRSVPEAEELAERIGFPLIIRPSFTLGGTGGSVAEDLDALRASVRDGLD 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGD-ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
            +    +L+E+ V G  E    VM D A   V   ++   D           +S  V PA
Sbjct: 198 ASPVRSVLVERSVAGWKEFELEVMRDLADNVVIVCSIENVDPMGVHT----GDSITVAPA 253

Query: 218 K-IPLDIYKEVQRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           + +    Y+ ++  A    + IG   G S   F  +P     + +E+N 
Sbjct: 254 QTLSDRQYQSLRTAAIRIIREIGVSTGGSNIQFAVNPEGDDFYVIEMNP 302



 Score = 54.4 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 37/225 (16%), Positives = 82/225 (36%), Gaps = 12/225 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYV 129
           LE        +   A  L+ D+ R  +++   G+P              +    +  P V
Sbjct: 633 LERAGARVLGTSPEAIDLAEDRSRFGRLLRELGIPHPRFGTATTAAEAREVARRLGYPVV 692

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           ++P        + ++  D+ + L L  S S +    +L++++++       V  DA  D 
Sbjct: 693 VRPSYVLGGRRMEIVYGDEDLELYLRSSVSGSPEHPILVDKFME---AYVEVDVDAVSDG 749

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
            E+ +     +  E    S +S+ V P   +   + + ++        +IG  G+    +
Sbjct: 750 EEVYIGGIMEHIEEAGVHSGDSSCVTPPITLTRSLQERIEDYTRRLALSIGVVGLMNVQY 809

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +      +V  +E N +   T     P ++   G     L   ++
Sbjct: 810 VVR--GDEVMAIECNPRASRT----VPYISKATGVPLARLATRVL 848


>gi|322435502|ref|YP_004217714.1| acetyl-CoA carboxylase, biotin carboxylase [Acidobacterium sp.
           MP5ACTX9]
 gi|321163229|gb|ADW68934.1| acetyl-CoA carboxylase, biotin carboxylase [Acidobacterium sp.
           MP5ACTX9]
          Length = 451

 Score = 77.1 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 86/221 (38%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     +     I +       + +  +K  ++Q +    VP+ P    
Sbjct: 77  AIHPGYGLLSENANFAEVCRASNIKFIGPPPEVTRMMGEKSTARQTMKKAKVPILPGSDG 136

Query: 111 ILVNRFT-MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS-----SWNHGD 164
           ++ N    ++    +  P ++K + GG   G+ + +    +P    Q+S     ++ +GD
Sbjct: 137 VIANEDEALEWARSVGYPVILKAVAGGGGRGMRICRNAAELPSMYQQASTEAANAFGNGD 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
             + E++++    +   V+ D   +V  +   +        K            +I   +
Sbjct: 197 MYM-EKFIERPRHIEFQVLADEHGNVMSLGERECSIQRRHQK----LIEEAPSLQITPKL 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             E+ ++   + + IG       +FL D    K++++E+N 
Sbjct: 252 RAELGKVIERSLKDIGYWNAGTIEFLMDE-DGKIYFIEMNT 291


>gi|261839817|gb|ACX99582.1| biotin carboxylase [Helicobacter pylori 52]
          Length = 455

 Score = 77.1 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 38/225 (16%), Positives = 77/225 (34%), Gaps = 14/225 (6%)

Query: 49  LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
            + D  F   +G   E+     I     + +        AL  DK ++K V+   G+PV 
Sbjct: 84  FEADAIFPG-YGFLSENQNFVEICSHHSLEFIGPSAKVMALMSDKSKAKSVMKEAGMPVI 142

Query: 109 PS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSW 160
                 +   +   +    I  P +IK   GG   G+ V+     +         ++ S 
Sbjct: 143 EGSDGLLKSYQEAEEIADKIGYPVIIKAAAGGGGRGMRVVGDKSKLKNLYLAAETEALSA 202

Query: 161 NHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI 219
                + +E+++     +   ++ D   +V  +          + K             +
Sbjct: 203 FGDGSVYLEKFINKPKHIEVQILADKHGNVIHVGERDCSVQRRQQKLI----EETPAVVL 258

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              + K +   A  A + IG  G    +FL D   +  +++E+N 
Sbjct: 259 EESVRKRLLETAIKAAKYIGYVGAGTFEFLLDSNMKDFYFMEMNT 303


>gi|260685111|ref|YP_003216396.1| carbamoyl phosphate synthase large subunit [Clostridium difficile
           CD196]
 gi|260688769|ref|YP_003219903.1| carbamoyl phosphate synthase large subunit [Clostridium difficile
           R20291]
 gi|306521871|ref|ZP_07408218.1| carbamoyl phosphate synthase large subunit [Clostridium difficile
           QCD-32g58]
 gi|260211274|emb|CBA66830.1| carbamoyl-phosphate synthase, pyrimidine-specific, large chain
           [Clostridium difficile CD196]
 gi|260214786|emb|CBE07508.1| carbamoyl-phosphate synthase, pyrimidine-specific, large chain
           [Clostridium difficile R20291]
          Length = 1068

 Score = 77.1 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 28/224 (12%), Positives = 81/224 (36%), Gaps = 11/224 (4%)

Query: 67  LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV--PVCPSILVNRFTMDSQHLI 124
            +   L    IP   +       + D+ +   ++    +  P    +      ++  + +
Sbjct: 644 KLAKFLHEKNIPILGTDFDDIDAAEDREKFDDLLERLDINRPKGKGVWSLNEGIEVANEL 703

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
             P +++P       G+ +   ++ +   L  +   +H + +LI++Y+ G E+    + D
Sbjct: 704 GYPVLVRPSYVLGGQGMEITYNEEKLSQYLQDAFDRDHKNPVLIDKYLTGREIEVDAICD 763

Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244
               +    +   +       +S  ++T      I  +I +++          +   G+ 
Sbjct: 764 KEDILIPGIMEHLERAGV---HSGDSTTMYPSQNISDEIKEKIVEYTKKIALDLNVLGMV 820

Query: 245 RSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
              F+      +++ +E+N +   T     P ++  +G    +L
Sbjct: 821 NIQFI--EFQNELYIIEVNPRASRT----VPYISKVSGVPIVDL 858



 Score = 62.8 bits (152), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 50/289 (17%), Positives = 105/289 (36%), Gaps = 39/289 (13%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQID-------VDRSVGL--------------V 45
           G ++E + S   G     +L++ G +V  I+        D+ V                +
Sbjct: 21  GQAAEFDYS---GTQACQSLKEEGIEVVLINSNPATIMTDKEVADKIYIEPLTIEFIEKI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGL-------VQAILELLEIPYTHSGILASALSMDKMRSKQ 98
           +   +PD   ++L G  G+ GL        + IL+   +    + + +     D+   ++
Sbjct: 78  IEKERPD---SLLAGMGGQTGLNLAVELYEKGILDKYGVKIIGTSVESIKKGEDRDIFRE 134

Query: 99  VVSSCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
           V+     PV  S +V      +D    I  P V++P       G  +   ++ +   L  
Sbjct: 135 VMKEINQPVIVSDIVTDLQAGLDYALTIGYPVVVRPAYTLGGTGGGIADNEEELREILSH 194

Query: 157 SSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215
               +   Q+LIE+ + G  E+   V+ D+  +   I V   +       ++  +     
Sbjct: 195 GLQLSPVGQVLIEKSIKGWKEIEYEVIRDSKGN--CIVVCNMENIDPVGVHTGDSIVVAP 252

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              +       +++ +     A+  +G     F  +P S +   +EIN 
Sbjct: 253 TQTLSNKECAMLKKASLDILNAVEVQGGCNVQFALNPHSFEYAVIEINP 301


>gi|146298407|ref|YP_001192998.1| acetyl-CoA carboxylase, biotin carboxylase [Flavobacterium
           johnsoniae UW101]
 gi|146152825|gb|ABQ03679.1| acetyl-CoA carboxylase, biotin carboxylase [Flavobacterium
           johnsoniae UW101]
          Length = 448

 Score = 77.1 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 76/221 (34%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     I +   I +  +         DK  +K  + + GVP  P    
Sbjct: 77  AIHPGYGFLSENAKFSKICQEHGIKFIGAAPEMIDRMGDKASAKATMKAAGVPCVPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGD 164
            +        +   I  P ++K   GG   G+  I K+  +           ++++ +  
Sbjct: 137 LLESYEHAQKTAAEIGYPVMMKATAGGGGKGMRAIWKEDELLKAWESARQEAAAAFGNDG 196

Query: 165 QLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
             + E+ ++    +   V+GD+      ++           K     +       +  D+
Sbjct: 197 MYM-EKLIEEPRHIEIQVVGDSYGKACHLSERDCSVQRRHQK----LTEETPSPFMTDDL 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              +   A  A + I   G    +FL D   R  +++E+N 
Sbjct: 252 RTRMGEAAVKAAEFIKYEGAGTVEFLVDKH-RNFYFMEMNT 291


>gi|299783110|gb|ADJ41108.1| Carbamoyl-phosphate synthase large subunit [Lactobacillus fermentum
           CECT 5716]
          Length = 1029

 Score = 77.1 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 46/293 (15%), Positives = 107/293 (36%), Gaps = 31/293 (10%)

Query: 22  CASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH-----G---NFGE 64
           C  A+++AG++   I         D   S  L    L  +   NV++     G    FG 
Sbjct: 578 CVQAIQEAGYRAIIINNNPETVSTDFSISDKLYFEPLTIEHVMNVVNLEQPRGVIVQFGG 637

Query: 65  DGLVQAILELL--EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-- 120
              +    EL+   +    + +     + D+ + ++++   G+                 
Sbjct: 638 QTAINLTKELVKRGVKILGTSLQGIEQTEDRHQFEELLKDAGIAQPKGATALNLAEAKVI 697

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
             ++  P +++P        + V++ +  +   + ++        +LI+ YV G+E    
Sbjct: 698 APVVGYPVMVRPSFVLGGRAMAVVENETELVTYVNKALKAAPNQPVLIDHYVAGLECEVD 757

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           ++ D    +    +   +       +S  +     P ++     KE+ + A    Q + C
Sbjct: 758 ILSDGHDVLIPGIMEHLEGSGI---HSGDSMALYPPVRLTSAQQKEIVQTAIAIGQRVHC 814

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            G+    F+    + +V+ +E+N +   T     P M+   GY   +L   ++
Sbjct: 815 LGMMNIQFIV---ADRVYVIEVNPRASRT----VPFMSKVTGYHLAKLATRLI 860



 Score = 74.8 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 46/267 (17%), Positives = 98/267 (36%), Gaps = 30/267 (11%)

Query: 26  LEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFNVLHGNFGE 64
           L++ G++V  ++ +                      S+  ++    PD     L G  G 
Sbjct: 37  LKEEGYQVVLVNSNPATIMTDDQIADQVYLEPLTVPSLTEIIELEHPDALLPTLGGQTGL 96

Query: 65  DGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
           +  ++     +L    +    + +     + D+ + KQ++   G PV  S+ V+      
Sbjct: 97  NLAIELDQAGVLNKFGVTLLGTDLQTIQEAEDREQFKQLMEEIGQPVPASLTVHTVEAAC 156

Query: 121 Q--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IEL 177
           Q       P +++P       G  +    + + L   +  + +   + LIEQ + G  E+
Sbjct: 157 QFAEEAGYPVIVRPAFTLGGTGGGIANDQEELELIAKRGLAQSPVTECLIEQSIAGLKEI 216

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
              VM DA+ D  EI+V   + +     ++  +        +P   Y+ ++  A     A
Sbjct: 217 EFEVMRDANGD--EISVCCMENFDPVGIHTGDSIVVAPNQTLPDVQYQRLRSAALAIVAA 274

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINV 264
           +   G         P+S   + +E+N 
Sbjct: 275 LKIEGGCNVQLAQSPISDDYYVIEVNP 301


>gi|257081966|ref|ZP_05576327.1| pyruvate carboxylase [Enterococcus faecalis E1Sol]
 gi|256989996|gb|EEU77298.1| pyruvate carboxylase [Enterococcus faecalis E1Sol]
          Length = 1142

 Score = 77.1 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 42/278 (15%), Positives = 94/278 (33%), Gaps = 29/278 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59
           +A+     ++E E S+   KA  + L   G K  +  +D  ++  +      D     +H
Sbjct: 28  VAI----YAAEDEYSVHRFKADEAYLVGKGKKPIEAYLDIENIIQIAKKSGAD----AIH 79

Query: 60  GNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----IL 112
             +G   E+       E   I +         +  DK+++K+   + G+   P     + 
Sbjct: 80  PGYGFLSENLRFAERCEEEGIIFVGPKTHHLDIFGDKIKAKEAAVAAGIASIPGSDGPVA 139

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGDQLLI 168
                +        P +IK   GG   G+ V    +           ++ +    D++ +
Sbjct: 140 TVEEVVAFGETHGFPIMIKAALGGGGRGMRVAHDAKEAREGYERAKSEAKAAFGSDEVYV 199

Query: 169 EQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKE 226
           E+Y+ +   +   ++GD   +V              ++        V P   +  +    
Sbjct: 200 EKYISNPKHIEVQILGDHHGNVL-----HLFERDCSVQRRHQKVVEVAPCVSMNEEQRAA 254

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +   A      +G       +FL      + +++E+N 
Sbjct: 255 ICSAAVQLMAHVGYVNAGTVEFLV--EGDQFYFIEVNP 290


>gi|256961250|ref|ZP_05565421.1| pyruvate carboxylase [Enterococcus faecalis Merz96]
 gi|256951746|gb|EEU68378.1| pyruvate carboxylase [Enterococcus faecalis Merz96]
          Length = 1142

 Score = 77.1 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 42/278 (15%), Positives = 94/278 (33%), Gaps = 29/278 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59
           +A+     ++E E S+   KA  + L   G K  +  +D  ++  +      D     +H
Sbjct: 28  VAI----YAAEDEYSVHRFKADEAYLVGKGKKPIEAYLDIENIIQIAKKSGAD----AIH 79

Query: 60  GNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----IL 112
             +G   E+       E   I +         +  DK+++K+   + G+   P     + 
Sbjct: 80  PGYGFLSENLRFAERCEEEGIIFVGPKTHHLDIFGDKIKAKEAAVAAGIASIPGSDGPVA 139

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGDQLLI 168
                +        P +IK   GG   G+ V    +           ++ +    D++ +
Sbjct: 140 TVEEVVAFGETHGFPIMIKAALGGGGRGMRVAHDAKEAREGYERAKSEAKAAFGSDEVYV 199

Query: 169 EQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKE 226
           E+Y+ +   +   ++GD   +V              ++        V P   +  +    
Sbjct: 200 EKYISNPKHIEVQILGDHHGNVL-----HLFERDCSVQRRHQKVVEVAPCVSMNEEQRAA 254

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +   A      +G       +FL      + +++E+N 
Sbjct: 255 ICSAAVQLMAHVGYVNAGTVEFLV--EGDQFYFIEVNP 290


>gi|254443018|ref|ZP_05056494.1| Carbamoyl-phosphate synthase L chain, ATP binding domain protein
           [Verrucomicrobiae bacterium DG1235]
 gi|198257326|gb|EDY81634.1| Carbamoyl-phosphate synthase L chain, ATP binding domain protein
           [Verrucomicrobiae bacterium DG1235]
          Length = 503

 Score = 77.1 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 44/235 (18%), Positives = 92/235 (39%), Gaps = 15/235 (6%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
             +  V    K D      +G   E+   QA  E   I +     +A  +  DK+ ++  
Sbjct: 66  DKLIEVAKQAKADSVHPG-YGFLAENADAQAAFEDAGIEWIGPPEMAIRMMGDKLTARST 124

Query: 100 VSSCGVPVCPSI-----LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL-- 152
           V + G+P+ P I     L +     +   +  P ++K   GG   G+ ++++ + +    
Sbjct: 125 VEAAGLPLVPGIGKTDTLSDEDLKTAAAKVGYPLLVKAAAGGGGKGMRIVREPKDLTEGI 184

Query: 153 --DLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209
               L++ S    D++ +E++V     +   ++GD   ++  +            K    
Sbjct: 185 RIARLEAKSSFGDDRVYLERFVTNAHHVEIQILGDKHGNLIHLCERDCSLQRRHQK---- 240

Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
                    +   I +++   A  A  A+G       +F+FD  +R+ F+LE+N 
Sbjct: 241 LIEESPSPVVDEQIREKMGAAALKAAAAVGYYSAGTVEFVFDSDTREFFFLEMNT 295


>gi|320582853|gb|EFW97070.1| Urea amidolyase [Pichia angusta DL-1]
          Length = 1830

 Score = 77.1 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 30/213 (14%), Positives = 70/213 (32%), Gaps = 12/213 (5%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS---ILVNR 115
           +G   E+      L    I +      A      K  ++++    GVP+ P    +    
Sbjct: 706 YGFLSENADFSDRLAAEGIVFVGPSGDAIRKLGLKHSAREIAEKAGVPLVPGSGLVATAA 765

Query: 116 FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQLLIEQY 171
              +    +  P ++K   GG  +G+  +     I         Q  ++     + +E++
Sbjct: 766 EAKEIAAKLEYPVMVKSTAGGGGIGLQKVDSPDDIERVFQTVQHQGQAYFGDAGVFLERF 825

Query: 172 VD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
           V+    +   + GD       +            K             +P     +++R 
Sbjct: 826 VENARHVEIQMFGDGYGKAIALGERDCSLQRRNQKII----EETPAPNLPDSTRAKMRRA 881

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
           A     ++  +     +F++D    + ++LE+N
Sbjct: 882 AEQLGASMNYKCAGTVEFIYDEKRDEFYFLEVN 914


>gi|315155390|gb|EFT99406.1| pyruvate carboxylase [Enterococcus faecalis TX0043]
          Length = 1152

 Score = 77.1 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 42/278 (15%), Positives = 94/278 (33%), Gaps = 29/278 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59
           +A+     ++E E S+   KA  + L   G K  +  +D  ++  +      D     +H
Sbjct: 38  VAI----YAAEDEYSVHRFKADEAYLVGKGKKPIEAYLDIENIIQIAKKSGAD----AIH 89

Query: 60  GNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----IL 112
             +G   E+       E   I +         +  DK+++K+   + G+   P     + 
Sbjct: 90  PGYGFLSENLRFAERCEEEGIIFVGPKTHHLDIFGDKIKAKEAAVAAGIASIPGSDGPVA 149

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGDQLLI 168
                +        P +IK   GG   G+ V    +           ++ +    D++ +
Sbjct: 150 TVEEVVAFGETHGFPIMIKAALGGGGRGMRVAHDAKEAREGYERAKSEAKAAFGSDEVYV 209

Query: 169 EQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKE 226
           E+Y+ +   +   ++GD   +V              ++        V P   +  +    
Sbjct: 210 EKYISNPKHIEVQILGDHHGNVL-----HLFERDCSVQRRHQKVVEVAPCVSMNEEQRAA 264

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +   A      +G       +FL      + +++E+N 
Sbjct: 265 ICSAAVQLMAHVGYVNAGTVEFLV--EGDQFYFIEVNP 300


>gi|302383362|ref|YP_003819185.1| carbamoyl-phosphate synthase subunit L [Brevundimonas subvibrioides
           ATCC 15264]
 gi|302193990|gb|ADL01562.1| Carbamoyl-phosphate synthase L chain ATP-binding protein
           [Brevundimonas subvibrioides ATCC 15264]
          Length = 660

 Score = 77.1 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 48/265 (18%), Positives = 90/265 (33%), Gaps = 42/265 (15%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H  FG   E+ +    LE   I +      A     DK+ SK+  +  GV   P  + 
Sbjct: 77  AVHPGFGFLSENPVFARRLEAEGIAFIGPNPHAIEAMGDKITSKKFAAQAGVSTVPGYMG 136

Query: 113 ---VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGDQ 165
               +   +   + I  P +IK   GG   GI V   D  +         ++ +    D+
Sbjct: 137 LIESDDHALQIANEIGYPVMIKASAGGGGKGIRVAHSDADMAEGFSAVKAEALTAFGDDR 196

Query: 166 LLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK---IPL 221
           + +E++ +D   +   V+GD   ++  +       +  E      N   +  A    +  
Sbjct: 197 VFLEKFIIDPRHIEIQVLGDKHGNIVSL-------FDRECSIQRRNQKVIEEAPSPLLDD 249

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY- 280
              K +   A    +A+        +F      R  F+LE+N +              + 
Sbjct: 250 ATRKAMSEQAVALARAVNYDSAGTVEF-VAGQDRSFFFLEMNTR----------LQVEHP 298

Query: 281 -----AGYSFRELLLWMVEDASCLR 300
                 G    +L+  M+  A+  R
Sbjct: 299 VTELITGV---DLVEQMIRSAAGER 320


>gi|218510726|ref|ZP_03508604.1| putative urea amidolyase protein [Rhizobium etli Brasil 5]
          Length = 638

 Score = 77.1 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 82/220 (37%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      L    I +        +    K  ++++  + GVP+ P   +
Sbjct: 77  AVHPGYGFLSENIGFAERLAAEGIAFIGPRPEHLSAFGLKHTARELAKASGVPLLPGSGL 136

Query: 114 NRFTMDS---QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQL 166
                ++      I+ P ++K   GG  +G+ +    +S+          + +     ++
Sbjct: 137 LSGADEALSAAEAIAYPVMLKSTAGGGGIGMQLCADPESLKASFESVQRTARASFGDARV 196

Query: 167 LIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIY 224
            IE++V D   +   + GD   +V  +           L+  +       PA  +     
Sbjct: 197 YIERFVADARHVEVQIFGDGRGNVIALGE-----RDCSLQRRNQKVVEETPAPGLSAATR 251

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             + + A     ++        +F++DPL ++ ++LE+N 
Sbjct: 252 GRLHKAAVDLGASVSYESAGTVEFIYDPLRQEFYFLEVNT 291


>gi|188588521|ref|YP_001920951.1| domain of unknown function family [Clostridium botulinum E3 str.
           Alaska E43]
 gi|188498802|gb|ACD51938.1| phosphoribosylglycinamide synthetase family protein [Clostridium
           botulinum E3 str. Alaska E43]
          Length = 411

 Score = 77.1 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 43/206 (20%), Positives = 87/206 (42%), Gaps = 20/206 (9%)

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQHLISPPYVI 130
           ELL+I    +   A+  + +K  ++ +     VP     ++  +T  + + +LI  P V+
Sbjct: 94  ELLDIK--GTSYQATLTARNKDMARDIFLKNNVPSAKYAVITNYTDALKASNLIGYPVVL 151

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH-------GDQLLIEQYVDGIELTCG-VM 182
           KP     S  +  IK + S+     + S +           + LIE+Y+ G E +    +
Sbjct: 152 KPTNAAGSQNVSYIKDEDSLLKAFNKISKFKTSYLGFSVRQEYLIEEYLIGPEFSVELFL 211

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR- 241
            + S++  EI    +    Y      +   H+ P+ I  ++   +  +A  A   IG + 
Sbjct: 212 NEGSIEFAEITEKHTSDLPY-----FVERLHIFPSSICQEVRDNIIDVAKKAVFFIGIQN 266

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPG 267
           G +  +  +     K+  +E+N +PG
Sbjct: 267 GPTHVEIKYTNEGPKI--IEVNGRPG 290


>gi|183981762|ref|YP_001850053.1| pyruvate carboxylase Pca [Mycobacterium marinum M]
 gi|183175088|gb|ACC40198.1| pyruvate carboxylase Pca [Mycobacterium marinum M]
          Length = 1131

 Score = 77.1 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 41/251 (16%), Positives = 86/251 (34%), Gaps = 22/251 (8%)

Query: 28  DAGFKVS-QIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           + G  V   + VD  V   L     D  +   +G   E+  +        I +       
Sbjct: 53  EVGHPVRAYLSVDEIVETALRA-GADAIYPG-YGFLSENPDLAGACAAAGITFVGPRAEL 110

Query: 87  SALSMDKMRSKQVVSSCGVPV----CPSILVNRFTMDSQHL---ISPPYVIKPLKGGSSL 139
             L+ +K R+       G+PV     PS  V      +Q     +  P  +K + GG   
Sbjct: 111 LQLTGNKSRAVTAAREAGLPVLRSSAPSASVQELVAAAQSETTGLRFPLFVKAVAGGGGR 170

Query: 140 GIIVIKKDQSIPLDLLQS-----SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194
           G+  +    ++   +  +     S++      L +  ++   +   ++ D   +V  +  
Sbjct: 171 GMRRVNDISALAEAIEAASREAESAFGDPTVYLEQAVLNPRHIEVQILADTQGNVIHLYE 230

Query: 195 PKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
                    ++        + PA  +P ++  ++   A    + IG       +FL D  
Sbjct: 231 -----RDCSVQRRHQKVIELAPAPNLPGELRDKICADAVAFARHIGYTCAGTVEFLLD-Q 284

Query: 254 SRKVFWLEINV 264
           S +  ++E+N 
Sbjct: 285 SGEYVFIEMNP 295


>gi|315025357|gb|EFT37289.1| pyruvate carboxylase [Enterococcus faecalis TX2137]
          Length = 1152

 Score = 77.1 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 42/278 (15%), Positives = 94/278 (33%), Gaps = 29/278 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59
           +A+     ++E E S+   KA  + L   G K  +  +D  ++  +      D     +H
Sbjct: 38  VAI----YAAEDEYSVHRFKADEAYLVGKGKKPIEAYLDIENIIQIAKKSGAD----AIH 89

Query: 60  GNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----IL 112
             +G   E+       E   I +         +  DK+++K+   + G+   P     + 
Sbjct: 90  PGYGFLSENLRFAERCEEEGIIFVGPKTHHLDIFGDKIKAKEAAVAAGIASIPGSDGPVA 149

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGDQLLI 168
                +        P +IK   GG   G+ V    +           ++ +    D++ +
Sbjct: 150 TVEEVVAFGETHGFPIMIKAALGGGGRGMRVAHDAKEAREGYERAKSEAKAAFGSDEVYV 209

Query: 169 EQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKE 226
           E+Y+ +   +   ++GD   +V              ++        V P   +  +    
Sbjct: 210 EKYISNPKHIEVQILGDHHGNVL-----HLFERDCSVQRRHQKVVEVAPCVSMNEEQRAA 264

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +   A      +G       +FL      + +++E+N 
Sbjct: 265 ICSAAVQLMAHVGYVNAGTVEFLV--EGDQFYFIEVNP 300


>gi|256963623|ref|ZP_05567794.1| pyruvate carboxylase [Enterococcus faecalis HIP11704]
 gi|256954119|gb|EEU70751.1| pyruvate carboxylase [Enterococcus faecalis HIP11704]
          Length = 1142

 Score = 77.1 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 42/278 (15%), Positives = 94/278 (33%), Gaps = 29/278 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59
           +A+     ++E E S+   KA  + L   G K  +  +D  ++  +      D     +H
Sbjct: 28  VAI----YAAEDEYSVHRFKADEAYLVGKGKKPIEAYLDIENIIQIAKKSGAD----AIH 79

Query: 60  GNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----IL 112
             +G   E+       E   I +         +  DK+++K+   + G+   P     + 
Sbjct: 80  PGYGFLSENLRFAERCEEEGIIFVGPKTHHLDIFGDKIKAKEAAVAAGIASIPGSDGPVA 139

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGDQLLI 168
                +        P +IK   GG   G+ V    +           ++ +    D++ +
Sbjct: 140 TVEEVVAFGETHGFPIMIKAALGGGGRGMRVAHDAKEAREGYERAKSEAKAAFGSDEVYV 199

Query: 169 EQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKE 226
           E+Y+ +   +   ++GD   +V              ++        V P   +  +    
Sbjct: 200 EKYISNPKHIEVQILGDHHGNVL-----HLFERDCSVQRRHQKVVEVAPCVSMNEEQRAA 254

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +   A      +G       +FL      + +++E+N 
Sbjct: 255 ICSAAVQLMAHVGYVNAGTVEFLV--EGDQFYFIEVNP 290


>gi|256956733|ref|ZP_05560904.1| pyruvate carboxylase [Enterococcus faecalis DS5]
 gi|256947229|gb|EEU63861.1| pyruvate carboxylase [Enterococcus faecalis DS5]
          Length = 1142

 Score = 77.1 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 42/278 (15%), Positives = 94/278 (33%), Gaps = 29/278 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59
           +A+     ++E E S+   KA  + L   G K  +  +D  ++  +      D     +H
Sbjct: 28  VAI----YAAEDEYSVHRFKADEAYLVGKGKKPIEAYLDIENIIQIAKKSGAD----AIH 79

Query: 60  GNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----IL 112
             +G   E+       E   I +         +  DK+++K+   + G+   P     + 
Sbjct: 80  PGYGFLSENLRFAERCEEEGIIFVGPKTHHLDIFGDKIKAKEAAVAAGIASIPGSDGPVA 139

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGDQLLI 168
                +        P +IK   GG   G+ V    +           ++ +    D++ +
Sbjct: 140 TVEEVVAFGETHGFPIMIKAALGGGGRGMRVAHDAKEAREGYERAKSEAKAAFGSDEVYV 199

Query: 169 EQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKE 226
           E+Y+ +   +   ++GD   +V              ++        V P   +  +    
Sbjct: 200 EKYISNPKHIEVQILGDHHGNVL-----HLFERDCSVQRRHQKVVEVAPCVSMNEEQRAA 254

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +   A      +G       +FL      + +++E+N 
Sbjct: 255 ICSAAVQLMAHVGYVNAGTVEFLV--EGDQFYFIEVNP 290


>gi|256763148|ref|ZP_05503728.1| pyruvate carboxylase [Enterococcus faecalis T3]
 gi|256684399|gb|EEU24094.1| pyruvate carboxylase [Enterococcus faecalis T3]
          Length = 1142

 Score = 77.1 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 42/278 (15%), Positives = 94/278 (33%), Gaps = 29/278 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59
           +A+     ++E E S+   KA  + L   G K  +  +D  ++  +      D     +H
Sbjct: 28  VAI----YAAEDEYSVHRFKADEAYLVGKGKKPIEAYLDIENIIQIAKKSGAD----AIH 79

Query: 60  GNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----IL 112
             +G   E+       E   I +         +  DK+++K+   + G+   P     + 
Sbjct: 80  PGYGFLSENLRFAERCEEEGIIFVGPKTHHLDIFGDKIKAKEAAVAAGIASIPGSDGPVA 139

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGDQLLI 168
                +        P +IK   GG   G+ V    +           ++ +    D++ +
Sbjct: 140 TVEEVVAFGETHGFPIMIKAALGGGGRGMRVAHDAKEAREGYERAKSEAKAAFGSDEVYV 199

Query: 169 EQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKE 226
           E+Y+ +   +   ++GD   +V              ++        V P   +  +    
Sbjct: 200 EKYISNPKHIEVQILGDHHGNVL-----HLFERDCSVQRRHQKVVEVAPCVSMNEEQRAA 254

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +   A      +G       +FL      + +++E+N 
Sbjct: 255 ICSAAVQLMAHVGYVNAGTVEFLV--EGDQFYFIEVNP 290


>gi|255975144|ref|ZP_05425730.1| pyruvate carboxylase [Enterococcus faecalis T2]
 gi|257416693|ref|ZP_05593687.1| pyruvate carboxylase [Enterococcus faecalis AR01/DG]
 gi|255968016|gb|EET98638.1| pyruvate carboxylase [Enterococcus faecalis T2]
 gi|257158521|gb|EEU88481.1| pyruvate carboxylase [Enterococcus faecalis ARO1/DG]
          Length = 1142

 Score = 77.1 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 42/278 (15%), Positives = 94/278 (33%), Gaps = 29/278 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59
           +A+     ++E E S+   KA  + L   G K  +  +D  ++  +      D     +H
Sbjct: 28  VAI----YAAEDEYSVHRFKADEAYLVGKGKKPIEAYLDIENIIQIAKKSGAD----AIH 79

Query: 60  GNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----IL 112
             +G   E+       E   I +         +  DK+++K+   + G+   P     + 
Sbjct: 80  PGYGFLSENLRFAERCEEEGIIFVGPKTHHLDIFGDKIKAKEAAVAAGIASIPGSDGPVA 139

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGDQLLI 168
                +        P +IK   GG   G+ V    +           ++ +    D++ +
Sbjct: 140 TVEEVVAFGETHGFPIMIKAALGGGGRGMRVAHDAKEAREGYERAKSEAKAAFGSDEVYV 199

Query: 169 EQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKE 226
           E+Y+ +   +   ++GD   +V              ++        V P   +  +    
Sbjct: 200 EKYISNPKHIEVQILGDHHGNVL-----HLFERDCSVQRRHQKVVEVAPCVSMNEEQRAA 254

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +   A      +G       +FL      + +++E+N 
Sbjct: 255 ICSAAVQLMAHVGYVNAGTVEFLV--EGDQFYFIEVNP 290


>gi|255972077|ref|ZP_05422663.1| pyruvate carboxylase [Enterococcus faecalis T1]
 gi|300860239|ref|ZP_07106326.1| pyruvate carboxylase [Enterococcus faecalis TUSoD Ef11]
 gi|255963095|gb|EET95571.1| pyruvate carboxylase [Enterococcus faecalis T1]
 gi|300849278|gb|EFK77028.1| pyruvate carboxylase [Enterococcus faecalis TUSoD Ef11]
          Length = 1142

 Score = 77.1 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 42/278 (15%), Positives = 94/278 (33%), Gaps = 29/278 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59
           +A+     ++E E S+   KA  + L   G K  +  +D  ++  +      D     +H
Sbjct: 28  VAI----YAAEDEYSVHRFKADEAYLVGKGKKPIEAYLDIENIIQIAKKSGAD----AIH 79

Query: 60  GNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----IL 112
             +G   E+       E   I +         +  DK+++K+   + G+   P     + 
Sbjct: 80  PGYGFLSENLRFAERCEEEGIIFVGPKTHHLDIFGDKIKAKEAAVAAGIASIPGSDGPVA 139

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGDQLLI 168
                +        P +IK   GG   G+ V    +           ++ +    D++ +
Sbjct: 140 TVEEVVAFGETHGFPIMIKAALGGGGRGMRVAHDAKEAREGYERAKSEAKAAFGSDEVYV 199

Query: 169 EQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKE 226
           E+Y+ +   +   ++GD   +V              ++        V P   +  +    
Sbjct: 200 EKYISNPKHIEVQILGDHHGNVL-----HLFERDCSVQRRHQKVVEVAPCVSMNEEQRAA 254

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +   A      +G       +FL      + +++E+N 
Sbjct: 255 ICSAAVQLMAHVGYVNAGTVEFLV--EGDQFYFIEVNP 290


>gi|254468010|ref|ZP_05081416.1| acetyl-CoA carboxylase, biotin carboxylase [beta proteobacterium
           KB13]
 gi|207086820|gb|EDZ64103.1| acetyl-CoA carboxylase, biotin carboxylase [beta proteobacterium
           KB13]
          Length = 448

 Score = 77.1 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 82/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      +E     +         L  DK+ +K+ +   G+PV P    
Sbjct: 77  AIHPGYGFLSENADFAEQVEKSGFTFIGPKSETIRLMGDKVSAKEAMIKAGIPVVPGSDG 136

Query: 114 NRFTMDSQ-----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGD 164
                  +       +  P +IK   GG   G+ V+  + S+   +     ++ S+    
Sbjct: 137 ELSDDPDEIIKTAKKVGYPVIIKAAGGGGGRGMRVVHSEASLLNAVSMTKNEAHSFFGNA 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+Y++    +   V+ D   +               ++          PA  +P  
Sbjct: 197 AVYMEKYLEKPRHIEYQVLADNHKNAI-----HLFERDCSMQRRHQKVIEEAPAPGLPDK 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + K++      A + IG RG    +FL+   + + +++E+N 
Sbjct: 252 LRKKMGDRCADACRKIGYRGAGTFEFLY--ENGEFYFIEMNT 291


>gi|118617574|ref|YP_905906.1| pyruvate carboxylase [Mycobacterium ulcerans Agy99]
 gi|118569684|gb|ABL04435.1| pyruvate carboxylase Pca [Mycobacterium ulcerans Agy99]
          Length = 1131

 Score = 77.1 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 41/251 (16%), Positives = 86/251 (34%), Gaps = 22/251 (8%)

Query: 28  DAGFKVS-QIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           + G  V   + VD  V   L     D  +   +G   E+  +        I +       
Sbjct: 53  EVGHPVRAYLSVDEIVETALRA-GADAIYPG-YGFLSENPDLAGACAAAGITFVGPRAEL 110

Query: 87  SALSMDKMRSKQVVSSCGVPV----CPSILVNRFTMDSQHL---ISPPYVIKPLKGGSSL 139
             L+ +K R+       G+PV     PS  V      +Q     +  P  +K + GG   
Sbjct: 111 LQLTGNKSRAVTAAREAGLPVLRSSAPSASVQELVAAAQSETTGLRFPLFVKAVAGGGGR 170

Query: 140 GIIVIKKDQSIPLDLLQS-----SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194
           G+  +    ++   +  +     S++      L +  ++   +   ++ D   +V  +  
Sbjct: 171 GMRRVNDISALAEAIEAASREAESAFGDPTVYLEQAVLNPRHIEVQILADTQGNVIHLYE 230

Query: 195 PKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
                    ++        + PA  +P ++  ++   A    + IG       +FL D  
Sbjct: 231 -----RDCSVQRRHQKVIELAPAPNLPGELRDKICADAVAFARHIGYTCAGTVEFLLD-Q 284

Query: 254 SRKVFWLEINV 264
           S +  ++E+N 
Sbjct: 285 SGEYVFIEMNP 295


>gi|332360623|gb|EGJ38433.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus sanguinis
           SK1056]
          Length = 455

 Score = 77.1 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 77/220 (35%), Gaps = 16/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  FG   E+     + E + I +         +  DK+ ++  +    VPV P    
Sbjct: 77  AIHPGFGFLSENSKFATMCEEVGIKFIGPSGAVMDMMGDKINARAQMIKAKVPVIPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
            +  +   ++    I  P ++K   GG   GI  ++K + +         ++ +      
Sbjct: 137 EVHTSEEALEVAEKIGYPVMLKASAGGGGKGIRKVEKAKDLVAAFESASSEAKAAFGNGA 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+ +     +   ++ D    V  +            K             I   + 
Sbjct: 197 MYMERVIYPARHIEVQILADQQGHVVHLGERDCSLQRNNQKVL----EESPSVAIGKTLR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +++   A  A Q++G       +FL D    + +++E+N 
Sbjct: 253 QQIGEAAVRAAQSVGYENAGTIEFLLDEAKAEFYFMEMNT 292


>gi|308504619|ref|XP_003114493.1| CRE-PYC-1 protein [Caenorhabditis remanei]
 gi|308261878|gb|EFP05831.1| CRE-PYC-1 protein [Caenorhabditis remanei]
          Length = 1175

 Score = 77.1 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 39/235 (16%), Positives = 86/235 (36%), Gaps = 21/235 (8%)

Query: 42  VGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQ 98
             ++   LK D+  + +H  +G   E     A  +   I +        A   DK+ ++Q
Sbjct: 95  DQIIETALKHDI--DAIHPGYGFLSERSDFAAACQNAGIVFIGPSPDVMARMGDKVAARQ 152

Query: 99  VVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154
                GV V P     I      ++       P ++K   GG   GI  + K + +    
Sbjct: 153 AAIEAGVQVVPGTPGPITTADEAIEFAKQYGTPIILKAAYGGGGRGIRRVDKLEEVEEAF 212

Query: 155 L----QSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209
                ++ +      L +E++V+    +   ++GD   ++  +           ++    
Sbjct: 213 RRSYSEAQAAFGDGSLFVEKFVERPRHIEVQLLGDHHGNIVHLYE-----RDCSVQRRHQ 267

Query: 210 NSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
               + PA  +P  + +++   A    + +G +     +FL D      +++E+N
Sbjct: 268 KVVEIAPAPALPEGVREKILADALRLARHVGYQNAGTVEFLVDQKGN-YYFIEVN 321


>gi|307285761|ref|ZP_07565895.1| pyruvate carboxylase [Enterococcus faecalis TX0860]
 gi|306502522|gb|EFM71789.1| pyruvate carboxylase [Enterococcus faecalis TX0860]
          Length = 1152

 Score = 77.1 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 42/278 (15%), Positives = 94/278 (33%), Gaps = 29/278 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59
           +A+     ++E E S+   KA  + L   G K  +  +D  ++  +      D     +H
Sbjct: 38  VAI----YAAEDEYSVHRFKADEAYLVGKGKKPIEAYLDIENIIQIAKKSGAD----AIH 89

Query: 60  GNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----IL 112
             +G   E+       E   I +         +  DK+++K+   + G+   P     + 
Sbjct: 90  PGYGFLSENLRFAERCEEEGIIFVGPKTHHLDIFGDKIKAKEAAVAAGIASIPGSDGPVA 149

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGDQLLI 168
                +        P +IK   GG   G+ V    +           ++ +    D++ +
Sbjct: 150 TVEEVVAFGETHGFPIMIKAALGGGGRGMRVAHDAKEAREGYERAKSEAKAAFGSDEVYV 209

Query: 169 EQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKE 226
           E+Y+ +   +   ++GD   +V              ++        V P   +  +    
Sbjct: 210 EKYISNPKHIEVQILGDHHGNVL-----HLFERDCSVQRRHQKVVEVAPCVSMNEEQRAA 264

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +   A      +G       +FL      + +++E+N 
Sbjct: 265 ICSAAVQLMAHVGYVNAGTVEFLV--EGDQFYFIEVNP 300


>gi|307290490|ref|ZP_07570403.1| pyruvate carboxylase [Enterococcus faecalis TX0411]
 gi|306498437|gb|EFM67941.1| pyruvate carboxylase [Enterococcus faecalis TX0411]
 gi|315030165|gb|EFT42097.1| pyruvate carboxylase [Enterococcus faecalis TX4000]
          Length = 1152

 Score = 77.1 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 42/278 (15%), Positives = 93/278 (33%), Gaps = 29/278 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59
           +A+     ++E E S+   KA  + L   G K  +  +D  ++  +      D     +H
Sbjct: 38  VAI----YAAEDEYSVHRFKADEAYLVGKGKKPIEAYLDIENIIQIAKKSGAD----AIH 89

Query: 60  GNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----IL 112
             +G   E+       E   I +         +  DK+++K+   + G+   P     + 
Sbjct: 90  PGYGFLSENLRFAERCEEEGIIFVGPKTHHLDIFGDKIKAKEAAVAAGIASIPGSDGPVA 149

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGDQLLI 168
                         P +IK   GG   G+ V    +           ++ +    D++ +
Sbjct: 150 TVEEVAAFGETHGFPIMIKAALGGGGRGMRVAHDAKEAREGYERAKSEAKAAFGSDEVYV 209

Query: 169 EQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKE 226
           E+Y+ +   +   ++GD   +V              ++        V P   +  +    
Sbjct: 210 EKYISNPKHIEVQILGDHHGNVL-----HLFERDCSVQRRHQKVVEVAPCVSMNEEQRAA 264

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +   A      +G       +FL      + +++E+N 
Sbjct: 265 ICSAAVQLMAHVGYVNAGTVEFLV--EGDQFYFIEVNP 300


>gi|257087486|ref|ZP_05581847.1| pyruvate carboxylase [Enterococcus faecalis D6]
 gi|256995516|gb|EEU82818.1| pyruvate carboxylase [Enterococcus faecalis D6]
          Length = 1142

 Score = 77.1 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 42/278 (15%), Positives = 94/278 (33%), Gaps = 29/278 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59
           +A+     ++E E S+   KA  + L   G K  +  +D  ++  +      D     +H
Sbjct: 28  VAI----YAAEDEYSVHRFKADEAYLVGKGKKPIEAYLDIENIIQIAKKSGAD----AIH 79

Query: 60  GNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----IL 112
             +G   E+       E   I +         +  DK+++K+   + G+   P     + 
Sbjct: 80  PGYGFLSENLRFAERCEEEGIIFVGPKTHHLDIFGDKIKAKEAAVAAGIASIPGSDGPVA 139

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGDQLLI 168
                +        P +IK   GG   G+ V    +           ++ +    D++ +
Sbjct: 140 TVEEVVAFGETHGFPIMIKAALGGGGRGMRVAHDAKEAREGYERAKSEAKAAFGSDEVYV 199

Query: 169 EQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKE 226
           E+Y+ +   +   ++GD   +V              ++        V P   +  +    
Sbjct: 200 EKYISNPKHIEVQILGDHHGNVL-----HLFERDCSVQRRHQKVVEVAPCVSMNEEQRAA 254

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +   A      +G       +FL      + +++E+N 
Sbjct: 255 ICSAAVQLMAHVGYVNAGTVEFLV--EGDQFYFIEVNP 290


>gi|149194863|ref|ZP_01871957.1| Phosphoribosylglycinamide formyltransferase 2 [Caminibacter
           mediatlanticus TB-2]
 gi|149135022|gb|EDM23504.1| Phosphoribosylglycinamide formyltransferase 2 [Caminibacter
           mediatlanticus TB-2]
          Length = 389

 Score = 77.1 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 39/250 (15%), Positives = 90/250 (36%), Gaps = 25/250 (10%)

Query: 26  LEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
           L      V  +    ++  V+   KPD     +         ++A+ E          I+
Sbjct: 50  LIAQKSYVVDMKNKDALLDVILREKPDFVLPEIEAIN-----IEALFEAENK---GIHII 101

Query: 86  ASALSMDKMRSKQ-----VVSSCGVPVCPSILVNRFTMDSQ--HLISPPYVIKPLKGGSS 138
            +A +++K  +++           +P      V+ +         +  P V+KP+   S 
Sbjct: 102 PNAEAVNKTMNRKNIRVFAAEKLNLPTSKYEFVSTYEDLEAACEKLGYPCVVKPVMSSSG 161

Query: 139 LGIIVIKKDQSIPLD--LLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK 196
            G  ++K  + I       +S +    D+L++E+++D  +    ++   + +      P 
Sbjct: 162 HGQSIVKSKEEIITAWEFAKSDARGSADELIVEEFID-FDYEITLLTAKNDEEVVFCPPI 220

Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256
               S    Y           ++     K+ Q +A    + +G RGI   +        +
Sbjct: 221 GHIQSG-GDYIFSWQEM----EMSEIALKKAQEIAKKIVEGLGGRGIFGVELFI--KGDE 273

Query: 257 VFWLEINVQP 266
           V++ E++ +P
Sbjct: 274 VYFSEVSPRP 283


>gi|303235154|ref|ZP_07321774.1| pyruvate carboxylase [Finegoldia magna BVS033A4]
 gi|302493746|gb|EFL53532.1| pyruvate carboxylase [Finegoldia magna BVS033A4]
          Length = 1139

 Score = 77.1 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 35/222 (15%), Positives = 72/222 (32%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+           I +            DK++SK V    GV     +  
Sbjct: 80  AIHPGYGFLSENAEFARRCRENGIIFVGPDESVLHSLGDKVQSKLVAKKSGVQTIEGVET 139

Query: 114 N----RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI-----PLDLLQSSSWNHGD 164
                   ++  + I  P ++K   GG   G+ +++K+  +             ++   D
Sbjct: 140 PIRNKNEALEIANQIGYPVMVKACAGGGGRGMRIVEKESDLMSSFVSAQNESKKAFGSDD 199

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLD 222
            + IE+Y+     +   ++ D   ++  +            K          PA  I   
Sbjct: 200 -MFIEKYIRNPKHIEVQIIADNHGNILHLYERDCSIQRRHQK-----VVEFAPAFSISEK 253

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              E+   A    + +G       +FL D      +++E+N 
Sbjct: 254 TKNELHNDAIKICKEVGYTNAGTVEFLVDEDENH-YFIEVNP 294


>gi|293383534|ref|ZP_06629444.1| pyruvate carboxylase [Enterococcus faecalis R712]
 gi|293387353|ref|ZP_06631909.1| pyruvate carboxylase [Enterococcus faecalis S613]
 gi|312906084|ref|ZP_07765096.1| pyruvate carboxylase [Enterococcus faecalis DAPTO 512]
 gi|312909430|ref|ZP_07768285.1| pyruvate carboxylase [Enterococcus faecalis DAPTO 516]
 gi|291079046|gb|EFE16410.1| pyruvate carboxylase [Enterococcus faecalis R712]
 gi|291083251|gb|EFE20214.1| pyruvate carboxylase [Enterococcus faecalis S613]
 gi|310627730|gb|EFQ11013.1| pyruvate carboxylase [Enterococcus faecalis DAPTO 512]
 gi|311290103|gb|EFQ68659.1| pyruvate carboxylase [Enterococcus faecalis DAPTO 516]
          Length = 1152

 Score = 77.1 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 42/278 (15%), Positives = 94/278 (33%), Gaps = 29/278 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59
           +A+     ++E E S+   KA  + L   G K  +  +D  ++  +      D     +H
Sbjct: 38  VAI----YAAEDEYSVHRFKADEAYLVGKGKKPIEAYLDIENIIQIAKKSGAD----AIH 89

Query: 60  GNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----IL 112
             +G   E+       E   I +         +  DK+++K+   + G+   P     + 
Sbjct: 90  PGYGFLSENLRFAERCEEEGIIFVGPKTHHLDIFGDKIKAKEAAVAAGIASIPGSDGPVA 149

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGDQLLI 168
                +        P +IK   GG   G+ V    +           ++ +    D++ +
Sbjct: 150 TVEEVVAFGETHGFPIMIKAALGGGGRGMRVAHDAKEAREGYERAKSEAKAAFGSDEVYV 209

Query: 169 EQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKE 226
           E+Y+ +   +   ++GD   +V              ++        V P   +  +    
Sbjct: 210 EKYISNPKHIEVQILGDHHGNVL-----HLFERDCSVQRRHQKVVEVAPCVSMNEEQRAA 264

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +   A      +G       +FL      + +++E+N 
Sbjct: 265 ICSAAVQLMAHVGYVNAGTVEFLV--EGDQFYFIEVNP 300


>gi|257090645|ref|ZP_05585006.1| pyruvate carboxylase [Enterococcus faecalis CH188]
 gi|256999457|gb|EEU85977.1| pyruvate carboxylase [Enterococcus faecalis CH188]
          Length = 1142

 Score = 77.1 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 42/278 (15%), Positives = 94/278 (33%), Gaps = 29/278 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59
           +A+     ++E E S+   KA  + L   G K  +  +D  ++  +      D     +H
Sbjct: 28  VAI----YAAEDEYSVHRFKADEAYLVGKGKKPIEAYLDIENIIQIAKKSGAD----AIH 79

Query: 60  GNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----IL 112
             +G   E+       E   I +         +  DK+++K+   + G+   P     + 
Sbjct: 80  PGYGFLSENLRFAERCEEEGIIFVGPKTHHLDIFGDKIKAKEAAVAAGIASIPGSDGPVA 139

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGDQLLI 168
                +        P +IK   GG   G+ V    +           ++ +    D++ +
Sbjct: 140 TVEEVVAFGETHGFPIMIKAALGGGGRGMRVAHDAKEAREGYERAKSEAKAAFGSDEVYV 199

Query: 169 EQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKE 226
           E+Y+ +   +   ++GD   +V              ++        V P   +  +    
Sbjct: 200 EKYISNPKHIEVQILGDHHGNVL-----HLFERDCSVQRRHQKVVEVAPCVSMNEEQRAA 254

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +   A      +G       +FL      + +++E+N 
Sbjct: 255 ICSAAVQLMAHVGYVNAGTVEFLV--EGDQFYFIEVNP 290


>gi|254563034|ref|YP_003070129.1| ATP-dependent urea carboxylase [Methylobacterium extorquens DM4]
 gi|254270312|emb|CAX26308.1| ATP-dependent urea carboxylase [Methylobacterium extorquens DM4]
          Length = 1176

 Score = 77.1 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 40/256 (15%), Positives = 86/256 (33%), Gaps = 30/256 (11%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      L    I +             K  ++++  + GVP+ P   +
Sbjct: 77  AVHPGYGFLSENVGFAERLAAEGIVFIGPRPEHLRAFGLKHTARELAKASGVPLLPGTGL 136

Query: 114 N---RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQL 166
                  +++   I  P ++K   GG  +G+ +    Q +                  ++
Sbjct: 137 LPDVETALNAAEAIGYPVMLKSTAGGGGIGMQLCHSGQELAERFAAVERTARASFGDARV 196

Query: 167 LIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIY 224
            +E++V     +   + GD    V  +           L+  +       PA  +   + 
Sbjct: 197 YLERFVAQARHVEVQIFGDGRGRVIALGE-----RDCSLQRRNQKVIEETPAPGLSDAVR 251

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI---FPEMAAYA 281
             +   A    +++        +F++DP      +LE+N +       +    P   A  
Sbjct: 252 ARLHAAAVALGESVAYASAGTVEFIYDPDREDFSFLEVNTR-------LQVEHPVTEAVF 304

Query: 282 GYSFRELLLWMVEDAS 297
           G    +L+ WMV  A+
Sbjct: 305 GI---DLVEWMVRQAA 317


>gi|331270564|ref|YP_004397056.1| pyruvate carboxylase [Clostridium botulinum BKT015925]
 gi|329127114|gb|AEB77059.1| pyruvate carboxylase [Clostridium botulinum BKT015925]
          Length = 1148

 Score = 77.1 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 77/222 (34%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+       E   I +            DK++SK V  S GVP  P    
Sbjct: 84  AIHPGYGFLSENAEFARKCEEAGIEFIGPTAEMMEKLGDKIKSKLVAQSVGVPTIPGVEK 143

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP-----LDLLQSSSWNHGD 164
            +      +        P ++K   GG   G+ +++  + +             ++   D
Sbjct: 144 PVTSEEEAIKFADFCGYPIMLKAAAGGGGRGMRIVRSKEELLPSFKSAKNEAKKAFGIDD 203

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + IE+Y++    +   V+GD   ++  +            K          PA  +  +
Sbjct: 204 -IFIEKYLENPKHIEVQVIGDKHGNIVHLYERDCSIQRRHQK-----VIEFTPAFALSEE 257

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +E+   A    +++  R     +FL D      +++E+N 
Sbjct: 258 KREEICSDALKIAESVSYRSAGTLEFLVDIHGNH-YFIEMNP 298


>gi|323703501|ref|ZP_08115147.1| carbamoyl-phosphate synthase, large subunit [Desulfotomaculum
           nigrificans DSM 574]
 gi|323531492|gb|EGB21385.1| carbamoyl-phosphate synthase, large subunit [Desulfotomaculum
           nigrificans DSM 574]
          Length = 1074

 Score = 77.1 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 57/287 (19%), Positives = 112/287 (39%), Gaps = 35/287 (12%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI---------DVD------------RSVGLV 45
           G ++E + +   G     AL++ G KV  +         D D             S+  +
Sbjct: 21  GQAAEFDYA---GTQACKALKEEGIKVVLVNSNPATIMTDGDIADKVYIEPLTWESLEKI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +A  +PD     L G  G +  V    + ILE  ++    + +     + D+   K  + 
Sbjct: 78  IAKERPDGLLPTLGGQTGLNLAVELSERGILEKYQVALLGTSLETIKRAEDRELFKATML 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G PV  S + +     +   + I  P +++P       G  +++ +Q +     +   
Sbjct: 138 EIGEPVPESTIASTVEECIAFANQIGYPLIVRPAYTLGGTGGGIVRNEQELVAVCHRGLK 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +  +Q+L+EQ V G  E+   VM D + +   I   ++      +   + +S  V P++
Sbjct: 198 MSMINQVLLEQSVAGWKEIEYEVMRDNADNCITICNMEN---IDPVGVHTGDSIVVAPSQ 254

Query: 219 -IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +    Y+ ++  A    +A+   G     F  DP S K   +E+N 
Sbjct: 255 TLSDREYQMLRSSALKIIRALKVAGGCNVQFALDPHSMKYIVIEVNP 301



 Score = 75.9 bits (186), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 34/233 (14%), Positives = 85/233 (36%), Gaps = 18/233 (7%)

Query: 68  VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ--HLIS 125
           +   L  + +    + +     + D+ + ++++ + G+P              Q    + 
Sbjct: 644 LAGELAAMGVNILGTPVEGIDAAEDREKFEKLLKNLGIPQTEGKTATTVEQARQIARELG 703

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            P +++P        + ++  +  +   +  +   +    +L+++YV G E+    +GD 
Sbjct: 704 FPVLVRPSYVLGGRAMEIVHNEDQLLKYMSSAVQVSPKHPVLVDKYVRGKEVEVDAIGDG 763

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGIS 244
                 I +P    +       S +S  V P + +     + V        +A+   G+ 
Sbjct: 764 Q----HIFIPGIMEHIERAGVHSGDSIAVYPPQSLTKREKELVVDYTVRIGEALKICGLM 819

Query: 245 RSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEMAAYA----GYSFREL 288
              ++      +V+ LE+N       P ++ V+  P +        G+S  EL
Sbjct: 820 NIQYVV--GEGEVYVLEVNPRASRTVPILSKVTGVPMVQTATRCMLGHSLAEL 870


>gi|291541504|emb|CBL14614.1| biotin carboxylase /acetyl-CoA carboxylase carboxyltransferase
           subunit alpha [Ruminococcus bromii L2-63]
          Length = 452

 Score = 77.1 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 42/219 (19%), Positives = 78/219 (35%), Gaps = 16/219 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+    ++ E   I +         L  DK  +++ + + GVPV P   +
Sbjct: 77  AIHPGYGLLSENAKFVSLCEQCNINFIGPSSEMIKLLGDKDNARKTMRAAGVPVTPGCDI 136

Query: 114 NRF---TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQL 166
                   +    I  P +IK   GG   GI  +   +      L +SS           
Sbjct: 137 VENVEQAKEEAEKIGFPLLIKARSGGGGKGIRRVDSIEQFEEAFLSASSEAQSAFGDGAC 196

Query: 167 LIEQYVDGI-ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
            IE+++  +  +   ++ D       I        S + K   +      PA +     K
Sbjct: 197 YIEKFIHPVKHIEMQLLCDK---YGNIVCLGERECSVQRKNQKMIEESPSPA-LDEKTRK 252

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           E+   A  A +A+        +FL D +    +++E+N 
Sbjct: 253 EMMIAAVKAAKAVNYVNAGTVEFLLD-MDNNFYFMEMNT 290


>gi|257079687|ref|ZP_05574048.1| pyruvate carboxylase [Enterococcus faecalis JH1]
 gi|294780845|ref|ZP_06746200.1| pyruvate carboxylase [Enterococcus faecalis PC1.1]
 gi|256987717|gb|EEU75019.1| pyruvate carboxylase [Enterococcus faecalis JH1]
 gi|294452090|gb|EFG20537.1| pyruvate carboxylase [Enterococcus faecalis PC1.1]
 gi|323481445|gb|ADX80884.1| pyruvate carboxylase [Enterococcus faecalis 62]
          Length = 1142

 Score = 77.1 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 42/278 (15%), Positives = 94/278 (33%), Gaps = 29/278 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59
           +A+     ++E E S+   KA  + L   G K  +  +D  ++  +      D     +H
Sbjct: 28  VAI----YAAEDEYSVHRFKADEAYLVGKGKKPIEAYLDIENIIQIAKKSGAD----AIH 79

Query: 60  GNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----IL 112
             +G   E+       E   I +         +  DK+++K+   + G+   P     + 
Sbjct: 80  PGYGFLSENLRFAERCEEEGIIFVGPKTHHLDIFGDKIKAKEAAVAAGIASIPGSDGPVA 139

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGDQLLI 168
                +        P +IK   GG   G+ V    +           ++ +    D++ +
Sbjct: 140 TVEEVVAFGETHGFPIMIKAALGGGGRGMRVAHDAKEAREGYERAKSEAKAAFGSDEVYV 199

Query: 169 EQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKE 226
           E+Y+ +   +   ++GD   +V              ++        V P   +  +    
Sbjct: 200 EKYISNPKHIEVQILGDHHGNVL-----HLFERDCSVQRRHQKVVEVAPCVSMNEEQRAA 254

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +   A      +G       +FL      + +++E+N 
Sbjct: 255 ICSAAVQLMAHVGYVNAGTVEFLV--EGDQFYFIEVNP 290


>gi|332716280|ref|YP_004443746.1| 3-methylcrotonyl-CoA carboxylase subunit alpha [Agrobacterium sp.
           H13-3]
 gi|325062965|gb|ADY66655.1| 3-methylcrotonyl-CoA carboxylase alpha subunit [Agrobacterium sp.
           H13-3]
          Length = 661

 Score = 77.1 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 41/216 (18%), Positives = 80/216 (37%), Gaps = 16/216 (7%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL----VN 114
           +G   E+           I +      A      K  +K +++  GVPV P        +
Sbjct: 82  YGFLSENAGFAEACASAGIIFIGPTPDAIRAMGGKSEAKALMAQAGVPVVPGYHGEDQAD 141

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQLLIEQ 170
                    I  P ++K   GG   G+ ++++ +    +L     ++ +    D++LIE+
Sbjct: 142 EKLAGEAEAIGYPVLLKASAGGGGKGMRIVREKREFAAELAGAKREALAAFGNDRMLIEK 201

Query: 171 YVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQ 228
           Y++    +   V  D   +   +            K          PA  +P  + + + 
Sbjct: 202 YLERPRHVEVQVFADGHGNCLSLFERDCSIQRRHQK-----VIEEAPAPGLPDTLRQRMY 256

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             A  A +AI  RG    +FL DP   + +++E+N 
Sbjct: 257 DAAVAAARAIDYRGAGTVEFLLDPS-GEFYFMEMNT 291


>gi|251810568|ref|ZP_04825041.1| pyruvate carboxylase [Staphylococcus epidermidis BCM-HMP0060]
 gi|251805728|gb|EES58385.1| pyruvate carboxylase [Staphylococcus epidermidis BCM-HMP0060]
          Length = 1153

 Score = 77.1 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 32/221 (14%), Positives = 77/221 (34%), Gaps = 20/221 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+           I +    +    +  DK++++    +  +PV P    
Sbjct: 84  AIHPGYGFLSENEQFARRCAEEGIKFIGPHLEHLDMFGDKVKARTTAINANLPVIPGTDG 143

Query: 114 NRFTMDSQHLI----SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
              + ++          P +IK   GG   G+ ++++   +     ++ S         +
Sbjct: 144 PIESFEAAEQFANEAGYPLMIKATSGGGGKGMRIVRESSELEDAFHRAKSEAEKSFGNSE 203

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDI 223
           + IE+Y+D    +   V+GD   ++  +           ++        V P   +   +
Sbjct: 204 VYIERYIDNPKHIEVQVIGDEFGNIIHLYE-----RDCSVQRRHQKVVEVAPSVGLSNKL 258

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +   A    + I        +FL      + F++E+N 
Sbjct: 259 RERICDAAIQLMENIKYVNAGTVEFLV--SGDEFFFIEVNP 297


>gi|270284497|ref|ZP_05966225.2| acetyl-/propionyl-coenzyme A carboxylase alpha chain
           [Bifidobacterium gallicum DSM 20093]
 gi|270277014|gb|EFA22868.1| acetyl-/propionyl-coenzyme A carboxylase alpha chain
           [Bifidobacterium gallicum DSM 20093]
          Length = 657

 Score = 77.1 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 39/203 (19%), Positives = 76/203 (37%), Gaps = 13/203 (6%)

Query: 69  QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN----RFTMDSQHLI 124
           QA+L      +      A     DK+ +++V     VP  P I       R  +D  H  
Sbjct: 104 QAVLN-AGAAWLGPNPTALEELGDKISARKVAKRAHVPPVPGISEPISDMRPLLDFAHTH 162

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD--QLLIEQYVD-GIELTCGV 181
             P ++K   GG   GI +++ D  +    +   +   GD     +E ++D G  +    
Sbjct: 163 GYPLMLKRADGGGGRGITLVRSDDELRGFYMNHDALQGGDLQAYFVELFIDQGRHVETQC 222

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241
             DA  + T  +           K             +  ++ + ++R +    +A+   
Sbjct: 223 GRDAHGNFTVYSTRDCSLQRRNQK----LIEEAPAPFLTPEVEEALERNSRALFEAVDYV 278

Query: 242 GISRSDFLFDPLSRKVFWLEINV 264
           G+   +F+    + KV++LE+N 
Sbjct: 279 GLGTCEFMVT-STGKVYFLEVNP 300


>gi|73748891|ref|YP_308130.1| carbamoyl-phosphate synthase, large subunit [Dehalococcoides sp.
           CBDB1]
 gi|73660607|emb|CAI83214.1| carbamoyl-phosphate synthase, large subunit [Dehalococcoides sp.
           CBDB1]
          Length = 1089

 Score = 77.1 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 34/194 (17%), Positives = 67/194 (34%), Gaps = 11/194 (5%)

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTMDSQHLISPPYVIKPLKG 135
           P   S   A  L+ D+ R ++++S  G+P  P   I      +     I  P V++P   
Sbjct: 664 PIIGSSAEAIDLAEDRRRFERLLSEMGIPQAPGAGITSLDEALSIADSIGYPVVVRPSYV 723

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195
                + ++     +   +  +   N G  +LI++Y+ G E+    + D         + 
Sbjct: 724 LGGRAMEIVSDASDLVRYMSAAIELNTGHPILIDKYLVGKEVEVDAIADGETVFIPGVME 783

Query: 196 KSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL- 253
             +           +S  V P   +       +        +A+  RG+    F+     
Sbjct: 784 HIERAGVHS----GDSMAVYPTQNLNEHDLATITDYTIRIGKALNVRGLMNIQFVVSKDP 839

Query: 254 ---SRKVFWLEINV 264
                 V+ LE+N 
Sbjct: 840 EGGDNIVYVLEVNP 853



 Score = 74.0 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 41/232 (17%), Positives = 84/232 (36%), Gaps = 9/232 (3%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMR 95
            S+  ++   +PD     L G  G +  V      +L    +    + I     + D+  
Sbjct: 79  ESITKIIEKERPDGLLPTLGGQTGLNLAVDLADAGVLAKYNVRSLGTPINTIRTAEDREL 138

Query: 96  SKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153
            K++++  G PV PS  V      +   H+I  P VI+P       G         +   
Sbjct: 139 FKELLTKIGEPVPPSETVTTAEDALRVAHMIGLPVVIRPAYTLGGTGGGFAHNWDEVEEV 198

Query: 154 LLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212
                + +   Q+L+E+ V G  E+   VM D + +   I     + +     ++  +  
Sbjct: 199 AQTGLNASPIHQILVEKSVAGWKEIEYEVMRDGADNCITIC--NMENFDPMGVHTGDSIV 256

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            V    +     + ++  +    +A+G  G        +P   + + +E+N 
Sbjct: 257 VVPVQTLTNKESQMLRTASIKIIRALGIEGGCNVQLSLNPNGNEYYVIEVNP 308


>gi|315144850|gb|EFT88866.1| pyruvate carboxylase [Enterococcus faecalis TX2141]
          Length = 1152

 Score = 77.1 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 42/278 (15%), Positives = 94/278 (33%), Gaps = 29/278 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59
           +A+     ++E E S+   KA  + L   G K  +  +D  ++  +      D     +H
Sbjct: 38  VAI----YAAEDEYSVHRFKADEAYLVGKGKKPIEAYLDIENIIQIAKKSGAD----AIH 89

Query: 60  GNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----IL 112
             +G   E+       E   I +         +  DK+++K+   + G+   P     + 
Sbjct: 90  PGYGFLSENLRFAERCEEEGIIFVGPKTHHLDIFGDKIKAKEAAVAAGIASIPGSDGPVA 149

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGDQLLI 168
                +        P +IK   GG   G+ V    +           ++ +    D++ +
Sbjct: 150 TVEEVVAFGETHGFPIMIKAALGGGGRGMRVAHDAKEAREGYERAKSEAKAAFGSDEVYV 209

Query: 169 EQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKE 226
           E+Y+ +   +   ++GD   +V              ++        V P   +  +    
Sbjct: 210 EKYISNPKHIEVQILGDHHGNVL-----HLFERDCSVQRRHQKVVEVAPCVSMNEEQRAA 264

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +   A      +G       +FL      + +++E+N 
Sbjct: 265 ICSAAVQLMAHVGYVNAGTVEFLV--EGDQFYFIEVNP 300


>gi|312899886|ref|ZP_07759204.1| pyruvate carboxylase [Enterococcus faecalis TX0470]
 gi|311292882|gb|EFQ71438.1| pyruvate carboxylase [Enterococcus faecalis TX0470]
          Length = 1152

 Score = 77.1 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 42/278 (15%), Positives = 94/278 (33%), Gaps = 29/278 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59
           +A+     ++E E S+   KA  + L   G K  +  +D  ++  +      D     +H
Sbjct: 38  VAI----YAAEDEYSVHRFKADEAYLVGKGKKPIEAYLDIENIIQIAKKSGAD----AIH 89

Query: 60  GNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----IL 112
             +G   E+       E   I +         +  DK+++K+   + G+   P     + 
Sbjct: 90  PGYGFLSENLRFAERCEEEGIIFVGPKTHHLDIFGDKIKAKEAAVAAGIASIPGSDGPVA 149

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGDQLLI 168
                +        P +IK   GG   G+ V    +           ++ +    D++ +
Sbjct: 150 TVEEVVAFGETHGFPIMIKAALGGGGRGMRVAHDAKEAREGYERAKSEAKAAFGSDEVYV 209

Query: 169 EQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKE 226
           E+Y+ +   +   ++GD   +V              ++        V P   +  +    
Sbjct: 210 EKYISNPKHIEVQILGDHHGNVL-----HLFERDCSVQRRHQKVVEVAPCVSMNEEQRAA 264

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +   A      +G       +FL      + +++E+N 
Sbjct: 265 ICSAAVQLMAHVGYVNAGTVEFLV--EGDQFYFIEVNP 300


>gi|311064974|ref|YP_003971700.1| acetyl-/propionyl-CoA carboxylase subunit alpha AccC
           [Bifidobacterium bifidum PRL2010]
 gi|310867294|gb|ADP36663.1| AccC Acetyl-/propionyl-CoA carboxylase alpha chain [Bifidobacterium
           bifidum PRL2010]
          Length = 636

 Score = 77.1 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 46/220 (20%), Positives = 84/220 (38%), Gaps = 17/220 (7%)

Query: 56  NVLHGNFGEDGLVQAI---LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
           N +H  +G    V +    +E     +      A     DK+ +++V  S  VP  P I 
Sbjct: 79  NAVHPGYGFLSEVPSFADKVEKAGAIWVGPHPQALIDLGDKITARRVAKSAQVPPVPGIS 138

Query: 113 VN----RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG--DQL 166
                 R  +D  H    P ++K   GG   GI V+  D  +    L   +   G  D+ 
Sbjct: 139 EPVRELRTLLDFSHTYGYPVMMKRTDGGGGRGITVVHDDDEMRRFYLNHDAMQGGDLDEY 198

Query: 167 LIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIY 224
            IE+++D    +      D   D T  +          ++  +       PA  +P ++ 
Sbjct: 199 FIEKFIDKARHVETQCGRDRFGDFTVYST-----RDCSVQRRNQKLVEEAPAPFLPDEVI 253

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +++  +      +   G+   +F+  P  RKV++LE+N 
Sbjct: 254 NQLEAYSRSLFNKVDYIGLGTCEFMVTPH-RKVYFLEVNP 292


>gi|307271564|ref|ZP_07552836.1| pyruvate carboxylase [Enterococcus faecalis TX0855]
 gi|312905180|ref|ZP_07764301.1| pyruvate carboxylase [Enterococcus faecalis TX0635]
 gi|306511836|gb|EFM80834.1| pyruvate carboxylase [Enterococcus faecalis TX0855]
 gi|310631570|gb|EFQ14853.1| pyruvate carboxylase [Enterococcus faecalis TX0635]
 gi|315579104|gb|EFU91295.1| pyruvate carboxylase [Enterococcus faecalis TX0630]
          Length = 1152

 Score = 77.1 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 42/278 (15%), Positives = 94/278 (33%), Gaps = 29/278 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59
           +A+     ++E E S+   KA  + L   G K  +  +D  ++  +      D     +H
Sbjct: 38  VAI----YAAEDEYSVHRFKADEAYLVGKGKKPIEAYLDIENIIQIAKKSGAD----AIH 89

Query: 60  GNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----IL 112
             +G   E+       E   I +         +  DK+++K+   + G+   P     + 
Sbjct: 90  PGYGFLSENLRFAERCEEEGIIFVGPKTHHLDIFGDKIKAKEAAVAAGIASIPGSDGPVA 149

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGDQLLI 168
                +        P +IK   GG   G+ V    +           ++ +    D++ +
Sbjct: 150 TVEEVVAFGETHGFPIMIKAALGGGGRGMRVAHDAKEAREGYERAKSEAKAAFGSDEVYV 209

Query: 169 EQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKE 226
           E+Y+ +   +   ++GD   +V              ++        V P   +  +    
Sbjct: 210 EKYISNPKHIEVQILGDHHGNVL-----HLFERDCSVQRRHQKVVEVAPCVSMNEEQRAA 264

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +   A      +G       +FL      + +++E+N 
Sbjct: 265 ICSAAVQLMAHVGYVNAGTVEFLV--EGDQFYFIEVNP 300


>gi|257084518|ref|ZP_05578879.1| pyruvate carboxylase [Enterococcus faecalis Fly1]
 gi|256992548|gb|EEU79850.1| pyruvate carboxylase [Enterococcus faecalis Fly1]
          Length = 1142

 Score = 77.1 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 42/278 (15%), Positives = 94/278 (33%), Gaps = 29/278 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59
           +A+     ++E E S+   KA  + L   G K  +  +D  ++  +      D     +H
Sbjct: 28  VAI----YAAEDEYSVHRFKADEAYLVGKGKKPIEAYLDIENIIQIAKKSGAD----AIH 79

Query: 60  GNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----IL 112
             +G   E+       E   I +         +  DK+++K+   + G+   P     + 
Sbjct: 80  PGYGFLSENLRFAERCEEEGIIFVGPKTHHLDIFGDKIKAKEAAVAAGIASIPGSDGPVA 139

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGDQLLI 168
                +        P +IK   GG   G+ V    +           ++ +    D++ +
Sbjct: 140 TVEEVVAFGETHGFPIMIKAALGGGGRGMRVAHDAKEAREGYERAKSEAKAAFGSDEVYV 199

Query: 169 EQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKE 226
           E+Y+ +   +   ++GD   +V              ++        V P   +  +    
Sbjct: 200 EKYISNPKHIEVQILGDHHGNVL-----HLFERDCSVQRRHQKVVEVAPCVSMNEEQRAA 254

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +   A      +G       +FL      + +++E+N 
Sbjct: 255 ICSAAVQLMAHVGYVNAGTVEFLV--EGDQFYFIEVNP 290


>gi|229545123|ref|ZP_04433848.1| pyruvate carboxylase [Enterococcus faecalis TX1322]
 gi|229309668|gb|EEN75655.1| pyruvate carboxylase [Enterococcus faecalis TX1322]
          Length = 1152

 Score = 77.1 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 42/278 (15%), Positives = 94/278 (33%), Gaps = 29/278 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59
           +A+     ++E E S+   KA  + L   G K  +  +D  ++  +      D     +H
Sbjct: 38  VAI----YAAEDEYSVHRFKADEAYLVGKGKKPIEAYLDIENIIQIAKKSGAD----AIH 89

Query: 60  GNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----IL 112
             +G   E+       E   I +         +  DK+++K+   + G+   P     + 
Sbjct: 90  PGYGFLSENLRFAERCEEEGIIFVGPKTHHLDIFGDKIKAKEAAVAAGIASIPGSDGPVA 149

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGDQLLI 168
                +        P +IK   GG   G+ V    +           ++ +    D++ +
Sbjct: 150 TVEEVVAFGETHGFPIMIKAALGGGGRGMRVAHDAKEAREGYERAKSEAKAAFGSDEVYV 209

Query: 169 EQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKE 226
           E+Y+ +   +   ++GD   +V              ++        V P   +  +    
Sbjct: 210 EKYISNPKHIEVQILGDHHGNVL-----HLFERDCSVQRRHQKVVEVAPCVSMNEEQRAA 264

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +   A      +G       +FL      + +++E+N 
Sbjct: 265 ICSAAVQLMAHVGYVNAGTVEFLV--EGDQFYFIEVNP 300


>gi|229549371|ref|ZP_04438096.1| pyruvate carboxylase [Enterococcus faecalis ATCC 29200]
 gi|307287664|ref|ZP_07567707.1| pyruvate carboxylase [Enterococcus faecalis TX0109]
 gi|312953537|ref|ZP_07772375.1| pyruvate carboxylase [Enterococcus faecalis TX0102]
 gi|229305608|gb|EEN71604.1| pyruvate carboxylase [Enterococcus faecalis ATCC 29200]
 gi|306501402|gb|EFM70705.1| pyruvate carboxylase [Enterococcus faecalis TX0109]
 gi|310628549|gb|EFQ11832.1| pyruvate carboxylase [Enterococcus faecalis TX0102]
 gi|315035746|gb|EFT47678.1| pyruvate carboxylase [Enterococcus faecalis TX0027]
 gi|315152027|gb|EFT96043.1| pyruvate carboxylase [Enterococcus faecalis TX0031]
 gi|315164887|gb|EFU08904.1| pyruvate carboxylase [Enterococcus faecalis TX1302]
 gi|327535741|gb|AEA94575.1| pyruvate carboxylase [Enterococcus faecalis OG1RF]
          Length = 1152

 Score = 77.1 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 42/278 (15%), Positives = 94/278 (33%), Gaps = 29/278 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59
           +A+     ++E E S+   KA  + L   G K  +  +D  ++  +      D     +H
Sbjct: 38  VAI----YAAEDEYSVHRFKADEAYLVGKGKKPIEAYLDIENIIQIAKKSGAD----AIH 89

Query: 60  GNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----IL 112
             +G   E+       E   I +         +  DK+++K+   + G+   P     + 
Sbjct: 90  PGYGFLSENLRFAERCEEEGIIFVGPKTHHLDIFGDKIKAKEAAVAAGIASIPGSDGPVA 149

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGDQLLI 168
                +        P +IK   GG   G+ V    +           ++ +    D++ +
Sbjct: 150 TVEEVVAFGETHGFPIMIKAALGGGGRGMRVAHDAKEAREGYERAKSEAKAAFGSDEVYV 209

Query: 169 EQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKE 226
           E+Y+ +   +   ++GD   +V              ++        V P   +  +    
Sbjct: 210 EKYISNPKHIEVQILGDHHGNVL-----HLFERDCSVQRRHQKVVEVAPCVSMNEEQRAA 264

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +   A      +G       +FL      + +++E+N 
Sbjct: 265 ICSAAVQLMAHVGYVNAGTVEFLV--EGDQFYFIEVNP 300


>gi|227519826|ref|ZP_03949875.1| pyruvate carboxylase [Enterococcus faecalis TX0104]
 gi|227072716|gb|EEI10679.1| pyruvate carboxylase [Enterococcus faecalis TX0104]
          Length = 1152

 Score = 77.1 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 42/278 (15%), Positives = 94/278 (33%), Gaps = 29/278 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59
           +A+     ++E E S+   KA  + L   G K  +  +D  ++  +      D     +H
Sbjct: 38  VAI----YAAEDEYSVHRFKADEAYLVGKGKKPIEAYLDIENIIQIAKKSGAD----AIH 89

Query: 60  GNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----IL 112
             +G   E+       E   I +         +  DK+++K+   + G+   P     + 
Sbjct: 90  PGYGFLSENLRFAERCEEEGIIFVGPKTHHLDIFGDKIKAKEAAVAAGIASIPGSDGPVA 149

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGDQLLI 168
                +        P +IK   GG   G+ V    +           ++ +    D++ +
Sbjct: 150 TVEEVVAFGETHGFPIMIKAALGGGGRGMRVAHDAKEAREGYERAKSEAKAAFGSDEVYV 209

Query: 169 EQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKE 226
           E+Y+ +   +   ++GD   +V              ++        V P   +  +    
Sbjct: 210 EKYISNPKHIEVQILGDHHGNVL-----HLFERDCSVQRRHQKVVEVAPCVSMNEEQRAA 264

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +   A      +G       +FL      + +++E+N 
Sbjct: 265 ICSAAVQLMAHVGYVNAGTVEFLV--EGDQFYFIEVNP 300


>gi|50308629|ref|XP_454317.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49643452|emb|CAG99404.1| KLLA0E08119p [Kluyveromyces lactis]
          Length = 1829

 Score = 77.1 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 39/267 (14%), Positives = 85/267 (31%), Gaps = 30/267 (11%)

Query: 21  ACASALEDAGFKVSQIDVDRSVGL-----VLAHLKPDLAFNVL-----------HGNFGE 64
           A  S  +   +     D D SV L        +L  D   N             +G   E
Sbjct: 652 AVYS--DPDKYSQHVTDADFSVALHGRTAAETYLDIDKIINAAKKTGAQAIIPGYGFLSE 709

Query: 65  DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL- 123
           +           I +      A      K  ++++     VP+ P   + +   +++ + 
Sbjct: 710 NADFSDRCSQENIVFVGPSGDAIRKLGLKHSAREIAERAKVPLVPGSGLIKDAKEAKEVA 769

Query: 124 --ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQLLIEQYVD-GIE 176
             +  P ++K   GG  +G+  +  +  I         Q  S+     + +E++V+    
Sbjct: 770 KKLEYPVMVKSTAGGGGIGLQKVDSEDDIERVFETVQHQGKSYFGDAGVFMERFVNNARH 829

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +   +MGD       I            K             +P     +++  +     
Sbjct: 830 VEIQMMGDGFGKAIAIGERDCSLQRRNQK----VIEETPAPNLPEATRAKMRAASERLGS 885

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEIN 263
            +  +     +F++D    + ++LE+N
Sbjct: 886 LLKYKCAGTVEFIYDEQRDEFYFLEVN 912


>gi|87199877|ref|YP_497134.1| carbamoyl-phosphate synthase L chain, ATP-binding [Novosphingobium
           aromaticivorans DSM 12444]
 gi|87135558|gb|ABD26300.1| Carbamoyl-phosphate synthase L chain, ATP-binding protein
           [Novosphingobium aromaticivorans DSM 12444]
          Length = 444

 Score = 77.1 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 37/218 (16%), Positives = 84/218 (38%), Gaps = 17/218 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-IL 112
            +H  +G   E+      +    I +    I       DK+ ++ +    G+PV P    
Sbjct: 77  AVHPGYGFLSENAGFARAVAAAGIRFVGPDIATLEGMGDKLAARALAVEAGLPVLPGGEA 136

Query: 113 VNRFTMDSQH-LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGDQLL 167
             R  + ++      P ++K + GG   G+  + + + +   L     ++ +      + 
Sbjct: 137 ATRADVHARATETGYPLLLKAVAGGGGKGMRRVDRPEDLDAALDMAQAEAQAAFGNGAVY 196

Query: 168 IEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYK 225
           +E++V  G  +   ++GD +  +              ++          PA  +PL   +
Sbjct: 197 VERFVARGRHVEVQLLGDGTNAI------HLGTRDCSIQRRFQKLVEEAPAPAMPLASRE 250

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            +++ A    + +G RG   ++FL D      ++LE+N
Sbjct: 251 GIEQAAVRLARHLGYRGAGTAEFLVDAEDFSFYFLELN 288


>gi|29376950|ref|NP_816104.1| pyruvate carboxylase [Enterococcus faecalis V583]
 gi|29344415|gb|AAO82174.1| pyruvate carboxylase [Enterococcus faecalis V583]
          Length = 1142

 Score = 77.1 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 42/278 (15%), Positives = 94/278 (33%), Gaps = 29/278 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59
           +A+     ++E E S+   KA  + L   G K  +  +D  ++  +      D     +H
Sbjct: 28  VAI----YAAEDEYSVHRFKADEAYLVGKGKKPIEAYLDIENIIQIAKKSGAD----AIH 79

Query: 60  GNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----IL 112
             +G   E+       E   I +         +  DK+++K+   + G+   P     + 
Sbjct: 80  PGYGFLSENLRFAERCEEEGIIFVGPKTHHLDIFGDKIKAKEAAVAAGIASIPGSDGPVA 139

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGDQLLI 168
                +        P +IK   GG   G+ V    +           ++ +    D++ +
Sbjct: 140 TVEEVVAFGETHGFPIMIKAALGGGGRGMRVAHDAKEAREGYERAKSEAKAAFGSDEVYV 199

Query: 169 EQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKE 226
           E+Y+ +   +   ++GD   +V              ++        V P   +  +    
Sbjct: 200 EKYISNPKHIEVQILGDHHGNVL-----HLFERDCSVQRRHQKVVEVAPCVSMNEEQRAA 254

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +   A      +G       +FL      + +++E+N 
Sbjct: 255 ICSAAVQLMAHVGYVNAGTVEFLV--EGDQFYFIEVNP 290


>gi|315174013|gb|EFU18030.1| pyruvate carboxylase [Enterococcus faecalis TX1346]
          Length = 1152

 Score = 77.1 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 42/278 (15%), Positives = 94/278 (33%), Gaps = 29/278 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59
           +A+     ++E E S+   KA  + L   G K  +  +D  ++  +      D     +H
Sbjct: 38  VAI----YAAEDEYSVHRFKADEAYLVGKGKKPIEAYLDIENIIQIAKKSGAD----AIH 89

Query: 60  GNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----IL 112
             +G   E+       E   I +         +  DK+++K+   + G+   P     + 
Sbjct: 90  PGYGFLSENLRFAERCEEEGIIFVGPKTHHLDIFGDKIKAKEAAVAAGIASIPGSDGPVA 149

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGDQLLI 168
                +        P +IK   GG   G+ V    +           ++ +    D++ +
Sbjct: 150 TVEEVVAFGETHGFPIMIKAALGGGGRGMRVAHDAKEAREGYERAKSEAKAAFGSDEVYV 209

Query: 169 EQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKE 226
           E+Y+ +   +   ++GD   +V              ++        V P   +  +    
Sbjct: 210 EKYISNPKHIEVQILGDHHGNVL-----HLFERDCSVQRRHQKVVEVAPCVSMNEEQRAA 264

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +   A      +G       +FL      + +++E+N 
Sbjct: 265 ICSAAVQLMAHVGYVNAGTVEFLV--EGDQFYFIEVNP 300


>gi|315161627|gb|EFU05644.1| pyruvate carboxylase [Enterococcus faecalis TX0645]
          Length = 1152

 Score = 77.1 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 42/278 (15%), Positives = 94/278 (33%), Gaps = 29/278 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59
           +A+     ++E E S+   KA  + L   G K  +  +D  ++  +      D     +H
Sbjct: 38  VAI----YAAEDEYSVHRFKADEAYLVGKGKKPIEAYLDIENIIQIAKKSGAD----AIH 89

Query: 60  GNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----IL 112
             +G   E+       E   I +         +  DK+++K+   + G+   P     + 
Sbjct: 90  PGYGFLSENLRFAERCEEEGIIFVGPKTHHLDIFGDKIKAKEAAVAAGIASIPGSDGPVA 149

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGDQLLI 168
                +        P +IK   GG   G+ V    +           ++ +    D++ +
Sbjct: 150 TVEEVVAFGETHGFPIMIKAALGGGGRGMRVAHDAKEAREGYERAKSEAKAAFGSDEVYV 209

Query: 169 EQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKE 226
           E+Y+ +   +   ++GD   +V              ++        V P   +  +    
Sbjct: 210 EKYISNPKHIEVQILGDHHGNVL-----HLFERDCSVQRRHQKVVEVAPCVSMNEEQRAA 264

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +   A      +G       +FL      + +++E+N 
Sbjct: 265 ICSAAVQLMAHVGYVNAGTVEFLV--EGDQFYFIEVNP 300


>gi|307270784|ref|ZP_07552074.1| pyruvate carboxylase [Enterococcus faecalis TX4248]
 gi|306512898|gb|EFM81540.1| pyruvate carboxylase [Enterococcus faecalis TX4248]
 gi|315032950|gb|EFT44882.1| pyruvate carboxylase [Enterococcus faecalis TX0017]
 gi|315146733|gb|EFT90749.1| pyruvate carboxylase [Enterococcus faecalis TX4244]
 gi|315166348|gb|EFU10365.1| pyruvate carboxylase [Enterococcus faecalis TX1341]
 gi|315170245|gb|EFU14262.1| pyruvate carboxylase [Enterococcus faecalis TX1342]
 gi|329572365|gb|EGG54019.1| pyruvate carboxylase [Enterococcus faecalis TX1467]
          Length = 1152

 Score = 77.1 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 42/278 (15%), Positives = 94/278 (33%), Gaps = 29/278 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59
           +A+     ++E E S+   KA  + L   G K  +  +D  ++  +      D     +H
Sbjct: 38  VAI----YAAEDEYSVHRFKADEAYLVGKGKKPIEAYLDIENIIQIAKKSGAD----AIH 89

Query: 60  GNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----IL 112
             +G   E+       E   I +         +  DK+++K+   + G+   P     + 
Sbjct: 90  PGYGFLSENLRFAERCEEEGIIFVGPKTHHLDIFGDKIKAKEAAVAAGIASIPGSDGPVA 149

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGDQLLI 168
                +        P +IK   GG   G+ V    +           ++ +    D++ +
Sbjct: 150 TVEEVVAFGETHGFPIMIKAALGGGGRGMRVAHDAKEAREGYERAKSEAKAAFGSDEVYV 209

Query: 169 EQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKE 226
           E+Y+ +   +   ++GD   +V              ++        V P   +  +    
Sbjct: 210 EKYISNPKHIEVQILGDHHGNVL-----HLFERDCSVQRRHQKVVEVAPCVSMNEEQRAA 264

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +   A      +G       +FL      + +++E+N 
Sbjct: 265 ICSAAVQLMAHVGYVNAGTVEFLV--EGDQFYFIEVNP 300


>gi|120597619|ref|YP_962193.1| carbamoyl-phosphate synthase L chain, ATP-binding [Shewanella sp.
            W3-18-1]
 gi|146294242|ref|YP_001184666.1| carbamoyl-phosphate synthase L chain, ATP-binding [Shewanella
            putrefaciens CN-32]
 gi|120557712|gb|ABM23639.1| Carbamoyl-phosphate synthase L chain, ATP-binding [Shewanella sp.
            W3-18-1]
 gi|145565932|gb|ABP76867.1| biotin carboxyl carrier protein [Shewanella putrefaciens CN-32]
          Length = 1517

 Score = 77.1 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 85/221 (38%), Gaps = 18/221 (8%)

Query: 57   VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
             LH   G   E     A+     + +    + +     +K  + +   +  VPV P    
Sbjct: 1018 ALHPGIGFLSESPQFAALCVNNGVNFVGPSVHSMTTMGNKSNAIKTSQAQNVPVVPGSHG 1077

Query: 111  -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI-----PLDLLQSSSWNHGD 164
             +      ++    I  P ++K ++GG   GI V+K+ + +           ++++ +GD
Sbjct: 1078 ILTNAEQAVNVASEIGYPVLLKAVQGGGGKGIQVVKRPEDMIGLFQKTATEAAAAFGNGD 1137

Query: 165  QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
              L E+YV     +   ++ D   +   + +          K    + + +    +P ++
Sbjct: 1138 LYL-EKYVTSLRHIEVQLLRDKFGNAKVLGLRDCSVQRNNQKVVEESGSTM----LPDEL 1192

Query: 224  YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             K+V         A    G    +F+++  + +V+++E+N 
Sbjct: 1193 KKQVLDYTRALGDATDYMGAGTVEFIYNLDANEVYFMEMNT 1233


>gi|315159034|gb|EFU03051.1| pyruvate carboxylase [Enterococcus faecalis TX0312]
          Length = 1152

 Score = 77.1 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 42/278 (15%), Positives = 94/278 (33%), Gaps = 29/278 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59
           +A+     ++E E S+   KA  + L   G K  +  +D  ++  +      D     +H
Sbjct: 38  VAI----YAAEDEYSVHRFKADEAYLVGKGKKPIEAYLDIENIIQIAKKSGAD----AIH 89

Query: 60  GNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----IL 112
             +G   E+       E   I +         +  DK+++K+   + G+   P     + 
Sbjct: 90  PGYGFLSENLRFAERCEEEGIIFVGPKTHHLDIFGDKIKAKEAAVAAGIASIPGSDGPVA 149

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGDQLLI 168
                +        P +IK   GG   G+ V    +           ++ +    D++ +
Sbjct: 150 TVEEVVAFGETHGFPIMIKAALGGGGRGMRVAHDAKEAREGYERAKSEAKAAFGSDEVYV 209

Query: 169 EQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKE 226
           E+Y+ +   +   ++GD   +V              ++        V P   +  +    
Sbjct: 210 EKYISNPKHIEVQILGDHHGNVL-----HLFERDCSVQRRHQKVVEVAPCVSMNEEQRAA 264

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +   A      +G       +FL      + +++E+N 
Sbjct: 265 ICSAAVQLMAHVGYVNAGTVEFLV--EGDQFYFIEVNP 300


>gi|227553989|ref|ZP_03984036.1| pyruvate carboxylase [Enterococcus faecalis HH22]
 gi|227176892|gb|EEI57864.1| pyruvate carboxylase [Enterococcus faecalis HH22]
 gi|315574311|gb|EFU86502.1| pyruvate carboxylase [Enterococcus faecalis TX0309B]
 gi|315580214|gb|EFU92405.1| pyruvate carboxylase [Enterococcus faecalis TX0309A]
          Length = 1152

 Score = 77.1 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 42/278 (15%), Positives = 94/278 (33%), Gaps = 29/278 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59
           +A+     ++E E S+   KA  + L   G K  +  +D  ++  +      D     +H
Sbjct: 38  VAI----YAAEDEYSVHRFKADEAYLVGKGKKPIEAYLDIENIIQIAKKSGAD----AIH 89

Query: 60  GNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----IL 112
             +G   E+       E   I +         +  DK+++K+   + G+   P     + 
Sbjct: 90  PGYGFLSENLRFAERCEEEGIIFVGPKTHHLDIFGDKIKAKEAAVAAGIASIPGSDGPVA 149

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGDQLLI 168
                +        P +IK   GG   G+ V    +           ++ +    D++ +
Sbjct: 150 TVEEVVAFGETHGFPIMIKAALGGGGRGMRVAHDAKEAREGYERAKSEAKAAFGSDEVYV 209

Query: 169 EQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKE 226
           E+Y+ +   +   ++GD   +V              ++        V P   +  +    
Sbjct: 210 EKYISNPKHIEVQILGDHHGNVL-----HLFERDCSVQRRHQKVVEVAPCVSMNEEQRAA 264

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +   A      +G       +FL      + +++E+N 
Sbjct: 265 ICSAAVQLMAHVGYVNAGTVEFLV--EGDQFYFIEVNP 300


>gi|163732072|ref|ZP_02139518.1| methylcrotonyl-CoA carboxylase, alpha subunit [Roseobacter
           litoralis Och 149]
 gi|161394370|gb|EDQ18693.1| methylcrotonyl-CoA carboxylase, alpha subunit [Roseobacter
           litoralis Och 149]
          Length = 629

 Score = 77.1 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 39/206 (18%), Positives = 72/206 (34%), Gaps = 20/206 (9%)

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI----LVNRFTMDSQHLISPPY 128
           E   + +      A      K  +K ++   GVPV P        +         I  P 
Sbjct: 80  EAAGLVFIGPSAQAIRAMGLKGAAKALMIEAGVPVVPGYHGADQADAQLQQQADKIGYPV 139

Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQLLIEQYVD-GIELTCGVMG 183
           +IK + GG   G+ ++         L  + S          +LIE+++     +   V G
Sbjct: 140 LIKAVAGGGGKGMRLVSAASGFTEALAAARSEAQAAFGNSDVLIEKFIPQPRHIEVQVFG 199

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRG 242
           D +       V         L+          PA  +  ++ +++ R A  A +AIG +G
Sbjct: 200 DGT------DVVHLFERDCSLQRRHQKVIEEAPAPGMTPEVREDMGRAAVRAAKAIGYKG 253

Query: 243 ISRSDFLFDPLS----RKVFWLEINV 264
               +F+ D          +++E+N 
Sbjct: 254 AGTVEFIVDGTGDLRPDGFYFMEMNT 279


>gi|146278047|ref|YP_001168206.1| carbamoyl-phosphate synthase L chain, ATP-binding [Rhodobacter
           sphaeroides ATCC 17025]
 gi|145556288|gb|ABP70901.1| 3-methylcrotonoyl-CoA carboxylase, alpha subunit [Rhodobacter
           sphaeroides ATCC 17025]
          Length = 646

 Score = 77.1 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 44/227 (19%), Positives = 86/227 (37%), Gaps = 27/227 (11%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      +E   + +      A      K  +K +++  GVPV P    
Sbjct: 77  AIHPGYGFLSENPGFVEAVEAAGLTFIGPSAAAIRAMGLKDAAKALMARAGVPVVPGY-- 134

Query: 114 NRFTMDSQHL------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----G 163
           +    + +HL      +  P +IK + GG   G+  +++ +     L  + +        
Sbjct: 135 HGADQEPEHLALMAGDVGYPVLIKAVAGGGGKGMRRVERAEDFTAALASARAEARTAFGN 194

Query: 164 DQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPL 221
           + +LIE+++D    +   V GD S  V              L+          PA  +  
Sbjct: 195 EDVLIEKWIDCPRHIEVQVFGDGSDAVHLYE------RDCSLQRRHQKVIEEAPAPGMTR 248

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR----KVFWLEINV 264
           ++   +   A  A +AIG RG    +F+ D        + +++E+N 
Sbjct: 249 EMRAAMGEAAVRAARAIGYRGAGTVEFIVDGSEGLRPDRFWFMEMNT 295


>gi|147669652|ref|YP_001214470.1| carbamoyl-phosphate synthase large subunit [Dehalococcoides sp.
           BAV1]
 gi|146270600|gb|ABQ17592.1| carbamoyl-phosphate synthase large subunit [Dehalococcoides sp.
           BAV1]
          Length = 1079

 Score = 77.1 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 34/194 (17%), Positives = 67/194 (34%), Gaps = 11/194 (5%)

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTMDSQHLISPPYVIKPLKG 135
           P   S   A  L+ D+ R ++++S  G+P  P   I      +     I  P V++P   
Sbjct: 654 PIIGSSAEAIDLAEDRRRFERLLSEMGIPQAPGAGITSLDEALSIADSIGYPVVVRPSYV 713

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195
                + ++     +   +  +   N G  +LI++Y+ G E+    + D         + 
Sbjct: 714 LGGRAMEIVSDASDLVRYMSAAIELNTGHPILIDKYLVGKEVEVDAIADGETVFIPGVME 773

Query: 196 KSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL- 253
             +           +S  V P   +       +        +A+  RG+    F+     
Sbjct: 774 HIERAGVHS----GDSMAVYPTQNLNEHDLATITDYTIRIGKALNVRGLMNIQFVVSKDP 829

Query: 254 ---SRKVFWLEINV 264
                 V+ LE+N 
Sbjct: 830 EGGDNIVYVLEVNP 843



 Score = 74.0 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 41/232 (17%), Positives = 84/232 (36%), Gaps = 9/232 (3%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMR 95
            S+  ++   +PD     L G  G +  V      +L    +    + I     + D+  
Sbjct: 69  ESITKIIEKERPDGLLPTLGGQTGLNLAVDLADAGVLAKYNVRSLGTPINTIRTAEDREL 128

Query: 96  SKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153
            K++++  G PV PS  V      +   H+I  P VI+P       G         +   
Sbjct: 129 FKELLTKIGEPVPPSETVTTAEDALRVAHMIGLPVVIRPAYTLGGTGGGFAHNWDEVEEV 188

Query: 154 LLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212
                + +   Q+L+E+ V G  E+   VM D + +   I     + +     ++  +  
Sbjct: 189 AQTGLNASPIHQILVEKSVAGWKEIEYEVMRDGADNCITIC--NMENFDPMGVHTGDSIV 246

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            V    +     + ++  +    +A+G  G        +P   + + +E+N 
Sbjct: 247 VVPVQTLTNKESQMLRTASIKIIRALGIEGGCNVQLSLNPNGNEYYVIEVNP 298


>gi|325109260|ref|YP_004270328.1| carbamoyl-phosphate synthase large subunit [Planctomyces
           brasiliensis DSM 5305]
 gi|324969528|gb|ADY60306.1| carbamoyl-phosphate synthase large subunit [Planctomyces
           brasiliensis DSM 5305]
          Length = 1090

 Score = 77.1 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 41/287 (14%), Positives = 104/287 (36%), Gaps = 33/287 (11%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAI---- 71
           ALE+ G +   +         D D S  L    L  +   N+       DG++       
Sbjct: 594 ALEELGIESIMVNSNPETVSTDYDTSDLLFFEPLTLEDVLNICD-RLQPDGVIVQFGGQT 652

Query: 72  -------LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTMDSQH 122
                  LE   +P   +   +   + D+ R +++++  G+   P+ +            
Sbjct: 653 PLNLAKGLETAGVPIIGTSPDSIDAAEDRERFQEILTRAGLKQPPNGIAIDTEGARAQAD 712

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGV 181
            I  P +++P        + +  ++ ++   + ++   +    +L+++++ D IE+    
Sbjct: 713 RIGYPVLVRPSYVLGGRAMQICYEETALLKYMTEAVDASPDHPVLVDKFLQDAIEVDVDA 772

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241
           + D    +    +   +       +S  ++  + P  +  +  +E++       + +  R
Sbjct: 773 ISDGETTIVGGIMEHIEEAGI---HSGDSACAIPPHSLSEETLEEIREATKALARELNVR 829

Query: 242 GISRSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           G+    F    +    +V+ LE+N +   T     P ++   G S  
Sbjct: 830 GLMNIQFAVKEIDGNFEVYVLEVNPRASRTS----PFVSKATGMSLA 872



 Score = 70.5 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 49/278 (17%), Positives = 101/278 (36%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQID------------VDRS---------VGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++             DR+         V  ++   KPD    
Sbjct: 29  SGTQACKALRELGYEVVLVNSNPATIMTDPETADRTYIEPITWQYVEEIIRQEKPDAILP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G  G +  +    + ILE   +    +     A + ++   K  +++ G+    S +
Sbjct: 89  TLGGQTGLNTAMELHKRGILEKHNVELIGARADVIAKAEERELFKDAMTAIGMDCARSAV 148

Query: 113 VNRFTMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           V         L  I  P +I+        G  +    +     + +    +   ++L+E+
Sbjct: 149 VRNMDQARAALDEIGLPLIIRASFTLGGTGGGIAYNREEFEGKVRKGLQLSPVGEVLLEE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            + G  E    VM D + +   I   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SMLGWKEYEMEVMRDKNDNCVIICAIEN----FDPMGVHTGDSLTVAPAQTLTDKEYQRM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +   F   + IG   G +   F   P + ++  +E+N 
Sbjct: 265 RDATFACIREIGVETGGANVQFAIHPETGRMVIIEMNP 302


>gi|229173200|ref|ZP_04300749.1| Biotin carboxylase [Bacillus cereus MM3]
 gi|228610284|gb|EEK67557.1| Biotin carboxylase [Bacillus cereus MM3]
          Length = 445

 Score = 77.1 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 79/220 (35%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+           I +             K+ S+  + +  VPV P I  
Sbjct: 77  AIHPGYGLLSENSSFPVRCREEGIVFIGPSEEIITKMGSKIESRIAMQAADVPVVPGITT 136

Query: 114 N----RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
           N       ++    I  P ++K   GG  +G+ +++ +Q++         ++ ++    +
Sbjct: 137 NIETAEEAIEIAKQIGYPLMLKASAGGGGIGMQLMETEQTLTKAFESNKTRAQNFFGNGE 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+Y+ D   +   ++ D   +   +   +        K             +     
Sbjct: 197 MYLERYIADAHHIEIQLLADTHGNTVYLWERECSVQRRNQK----VIEEAPSPFLDEGTR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K +  +A  A +A+G       +FL D      ++LE+N 
Sbjct: 253 KAMGEVAVQAAKALGYTNAGTVEFLVDDQKN-FYFLEMNT 291


>gi|190571025|ref|YP_001975383.1| propionyl-CoA carboxylase, alpha subunit [Wolbachia endosymbiont of
           Culex quinquefasciatus Pel]
 gi|190357297|emb|CAQ54725.1| propionyl-CoA carboxylase, alpha subunit [Wolbachia endosymbiont of
           Culex quinquefasciatus Pel]
          Length = 656

 Score = 77.1 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 31/220 (14%), Positives = 75/220 (34%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      LE   I +         ++ +K+ +K+     GV V P  + 
Sbjct: 81  AVHPGYGFLAENPDFPRALEKHNIDFIGPSAETIEVTANKITAKEEARKAGVNVVPGYMG 140

Query: 114 N----RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
                         I  P ++K   GG   G+ ++   + I L       ++        
Sbjct: 141 KIEDAAHAAIVAEEIGFPVMLKAASGGGGKGMRIVYSKKEIELAFTSATNEAEKSFKDGS 200

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+Y++    +   ++ D   ++  +   +        K             I  ++ 
Sbjct: 201 IFIEKYIELPRHIEIQIIADKYGNIVCLGERECSVQRNNQKII----EETPSPFISEEVR 256

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +++        + +        +F+ D  ++  ++LE+N 
Sbjct: 257 QKMYAQCVSLAKQVDYFSAGTVEFVVDK-NQNFYFLEVNT 295


>gi|183220671|ref|YP_001838667.1| carbamoyl phosphate synthase large subunit [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Paris)']
 gi|189910774|ref|YP_001962329.1| carbamoyl phosphate synthase large subunit [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Ames)']
 gi|167775450|gb|ABZ93751.1| Carbamoyl-phosphate synthase (glutamine- hydrolyzing), large
           subunit [Leptospira biflexa serovar Patoc strain 'Patoc
           1 (Ames)']
 gi|167779093|gb|ABZ97391.1| Carbamoyl-phosphate synthase large chain (Carbamoyl-phosphate
           synthetase ammonia chain) [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Paris)']
          Length = 1103

 Score = 77.1 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 51/278 (18%), Positives = 97/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G +V  +         D D              +  ++   KPD    
Sbjct: 29  SGTQATKALREKGIRVILVNSNPATIMTDPDLADATYIEPLTVPVLEKIIKKEKPDAILP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +    + +LE   +    + + A   + D+   K  +   G+ V  S +
Sbjct: 89  TVGGQTALNLALALHREGVLEKYNVELIGAKVDAIRKAEDRELFKLAMEKLGIRVAKSFM 148

Query: 113 VNRFTMD--SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           V+       ++  I  P +I+P       G     ++        +  S +   Q+L+E+
Sbjct: 149 VSDMEAARKAKDEIGFPIIIRPAFTLGGTGGGTCYEESEFEEIAQKGLSASPISQILVEE 208

Query: 171 YVDG-IELTCGVMGD-ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            V G  E    VM D     V   ++   D           +S  V P + +    Y+ +
Sbjct: 209 SVMGWKEFELEVMRDLNDNVVIICSIENLDPMGVHT----GDSITVAPQQTLSDKEYQRL 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           + ++    + IG   G S   F  +P +  V  +E+N 
Sbjct: 265 RDMSIDIIREIGVETGGSNIQFAVNPENGDVIVIEMNP 302



 Score = 57.4 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/225 (13%), Positives = 83/225 (36%), Gaps = 14/225 (6%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYV 129
           LE   +P   +   +   + D+ R  +V+    +    + + +      +    I  P +
Sbjct: 682 LEKRGVPILGTSPDSIDRAEDRKRFAEVLEKLNLKSPENGIASSKDKAREIARKIGYPVL 741

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        ++++ ++  +   + ++   +    LL++ ++ D  E+    + D    
Sbjct: 742 VRPSYVLGGRAMLIVNEETELDKYMEEAEEVSEDRPLLVDSFLQDATEVDVDALCDGKDV 801

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
                +   +    E    S +S  VLP + I   + +E++         +  +G+    
Sbjct: 802 FIAGVMEHIE----EAGIHSGDSACVLPPQSISQRMIQEIEEATLRLALELDVKGLINVQ 857

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +        ++ LE+N +   T     P +A   G    ++ + +
Sbjct: 858 YAI--KDETLYVLEVNPRASRT----VPFVAKSIGIPIVKIAVRL 896


>gi|91083023|ref|XP_974679.1| PREDICTED: similar to Propionyl-CoA carboxylase alpha chain,
           mitochondrial precursor (PCCase subunit alpha)
           (Propanoyl-CoA:carbon dioxide ligase subunit alpha)
           [Tribolium castaneum]
          Length = 684

 Score = 77.1 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 41/220 (18%), Positives = 83/220 (37%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+    ++LE  +I +            DK+ SK++  + GV V P    
Sbjct: 100 AVHPGYGFLSENASFVSLLEDEKIVFVGPPAGVINKLGDKLASKKLAQNAGVNVIPGFDG 159

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGDQ 165
            I   +  ++    I  P +IK   GG   G+ + + D            +++S    ++
Sbjct: 160 EIRDAKHCVEIARQIGYPVMIKASAGGGGKGMRIARNDDDARNGFQMSTEEAASSFGDNR 219

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           +L+E+ ++    +   V+GD    +  +   +        K             + ++  
Sbjct: 220 ILLEKLIESPRHVEVQVLGDKHGRIVYLNERECSIQRRNQKI----VEEAPSTFLDVETR 275

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K +   A      IG       +FL D  +R  ++LE+N 
Sbjct: 276 KAMGEQAVRLCTDIGYHSAGTVEFLVDK-NRAFYFLEMNT 314


>gi|330817564|ref|YP_004361269.1| acetyl-CoA carboxylase biotin carboxylase subunit [Burkholderia
           gladioli BSR3]
 gi|327369957|gb|AEA61313.1| acetyl-CoA carboxylase biotin carboxylase subunit [Burkholderia
           gladioli BSR3]
          Length = 483

 Score = 77.1 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 77/221 (34%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+    A +E   + +        A   DK ++++     GVP  P    
Sbjct: 97  AIHPGYGFLSENADFAAQVEAAGLIFVGPSPAVIATMGDKAKARETAQRAGVPTVPGSNG 156

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK----DQSIPLDLLQSSSWNHGDQ 165
            +L           I  P +IK   GG   GI V       D  +PL   ++ +      
Sbjct: 157 VVLSLDEARGIAERIGYPIMIKAAAGGGGRGIRVAHDAAQLDAELPLAQREAQAAFGNGG 216

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDI 223
           + +E+++     +   V+GD         V         L+          P   +  ++
Sbjct: 217 VYLERFIARARHIEVQVLGDG------REVVHLFERECSLQRRRQKIMEEAPSPSLTPEL 270

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +   A    + +  R     ++LFD    + +++E+N 
Sbjct: 271 RQALCASATRLARQVAYRSAGTLEYLFDETRGEFYFIEMNT 311


>gi|307293384|ref|ZP_07573230.1| Carbamoyl-phosphate synthase L chain ATP-binding [Sphingobium
           chlorophenolicum L-1]
 gi|306881450|gb|EFN12666.1| Carbamoyl-phosphate synthase L chain ATP-binding [Sphingobium
           chlorophenolicum L-1]
          Length = 626

 Score = 77.1 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 46/221 (20%), Positives = 85/221 (38%), Gaps = 21/221 (9%)

Query: 59  HGNFGEDGLV-QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117
           +G   E+    QA+++   + +      +      K  +K+++S  GVPV P  L    +
Sbjct: 82  YGFLSENAAFAQAVID-AGLIWVGPNPASITAMGLKDAAKKLMSEAGVPVTPGYLGEDQS 140

Query: 118 MD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQLLIE 169
                     I  P +IK + GG   G+  +   +S    LL    +++S    DQ+LIE
Sbjct: 141 AARLQSEADAIGYPVLIKAVAGGGGKGMRRVDAPESFADALLSCQREAASSFGNDQVLIE 200

Query: 170 QYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
           +Y+     +   V GD     +   V         L+          PA  +     + +
Sbjct: 201 KYILSPRHIEVQVFGD-----SHGQVVHLFERDCSLQRRHQKVIEEAPAPGMDAATREAI 255

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSR----KVFWLEINV 264
              A  A QA+   G    +F+ D        +++++E+N 
Sbjct: 256 CGAAVRAAQAVDYVGAGTIEFIADASEGLRADRIWFMEMNT 296


>gi|296284178|ref|ZP_06862176.1| AccC, acetyl-CoA carboxylase, biotin carboxylase [Citromicrobium
           bathyomarinum JL354]
          Length = 451

 Score = 77.1 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 77/220 (35%), Gaps = 18/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     I+E  +I +            DK+ +K+     G+P+ P    
Sbjct: 78  AIHPGYGFLSENAKFAEIVEAHDIKWIGPKPEHIRTMGDKVTAKKTAGDLGLPLVPGSPG 137

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSWNHGDQ 165
            +            I  P ++K   GG   G+ V+ ++  +         ++ S    D 
Sbjct: 138 AVESVEEAKRIAAEIGYPVLVKAASGGGGRGMKVVPEESQLESLMSQAKSEAKSAFGDDT 197

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+Y+ +   +   V GD + +   +            K             +     
Sbjct: 198 VYLEKYLGNPRHIEFQVFGDGNGNAIHLGERDCSLQRRHQKVL----EEAPSPVLTSAER 253

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             + ++   A   +  RG    +FL+   + + F++E+N 
Sbjct: 254 DRMGKVCADAMAQMAYRGAGTIEFLW--ENGEFFFIEMNT 291


>gi|282883228|ref|ZP_06291827.1| carbamoyl-phosphate synthase, large subunit [Peptoniphilus
           lacrimalis 315-B]
 gi|281297040|gb|EFA89537.1| carbamoyl-phosphate synthase, large subunit [Peptoniphilus
           lacrimalis 315-B]
          Length = 1067

 Score = 77.1 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 28/226 (12%), Positives = 79/226 (34%), Gaps = 13/226 (5%)

Query: 71  ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--QHLISPPY 128
            L+   I    +       + D+ R +++++S  +       V+         + +  P 
Sbjct: 644 FLDSKGIKILGTDFDNIDKAEDRERFEELLNSLDINRPKGGGVSSVEEGIKLANKLKYPL 703

Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD 188
           +++P       G+ +   +  +   L  +   +  + +LI++Y+ G E+    + D    
Sbjct: 704 LVRPSYVLGGKGMEITHDEDQLKKYLKAAFKEDSKNPVLIDKYLLGREIEVDAICDGQDI 763

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           +    +   +           +S  + PA  +     +++        + +   G+    
Sbjct: 764 LIPGIMEHLERAGVHS----GDSISIYPADKLSKKSKEKILDYTKKIAKGLKALGMINIQ 819

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           F+       ++ +E+N +   T     P ++  +G    EL    +
Sbjct: 820 FI--EYMDDIYIIEVNPRASRT----VPYISKVSGIPIVELATRAI 859



 Score = 57.1 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 41/246 (16%), Positives = 89/246 (36%), Gaps = 14/246 (5%)

Query: 28  DAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSG 83
                +  I +D  +  ++   KPD     + G  G +  ++     IL+   I    + 
Sbjct: 60  ADKIYIEPITIDF-IEKIIKKEKPDSLLAAMGGQTGLNMAMELDKMGILKKYNIEVIGTD 118

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--QHLISPPYVIKPLKGGSSLGI 141
           I A     D+   +Q +     P+  S +V  F         I  P V++P       G 
Sbjct: 119 IDAIKKGEDRDIFRQTMKKINQPLVESEIVTSFEEGKKLAEKIGFPLVVRPAYTLGGTGG 178

Query: 142 IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASL-DVTEIAVPKSDF 199
                ++ +   L      +   Q+L+E+ + G +E+   V+ D +   +    +   D 
Sbjct: 179 GFANNEEELEEILKHGLKISPVSQVLLEKSIKGYMEIEFEVIRDGAGNSLIICDMENVDP 238

Query: 200 YSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
                     +S  V P + +  ++  ++++ +      +G +G        +P +   +
Sbjct: 239 VGVHT----GDSIVVAPCQSLKKEVLDKLKKASIDIVNEVGVKGACNVQLALNPKTYDYY 294

Query: 259 WLEINV 264
            +EIN 
Sbjct: 295 VIEINP 300


>gi|24372429|ref|NP_716471.1| acetyl-CoA carboxylase multifunctional enzyme accADC, carboxyl
            transferase subunit alpha/carboxyl transferase subunit
            beta/biotin carboxylase [Shewanella oneidensis MR-1]
 gi|24346403|gb|AAN53916.1|AE015528_9 acetyl-CoA carboxylase multifunctional enzyme accADC, carboxyl
            transferase subunit alpha/carboxyl transferase subunit
            beta/biotin carboxylase [Shewanella oneidensis MR-1]
          Length = 1517

 Score = 77.1 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 84/221 (38%), Gaps = 18/221 (8%)

Query: 57   VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
             LH   G   E     A+     + +    + +     +K  + +   +  VPV P    
Sbjct: 1018 ALHPGIGFLSESPQFAALCVNNGVNFVGPSVHSMTTMGNKSNAIKTSQAQNVPVVPGSHG 1077

Query: 111  -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI-----PLDLLQSSSWNHGD 164
             +      ++    I  P ++K ++GG   GI V+K+ + +           ++++ +GD
Sbjct: 1078 ILTNAEQAVNVASEIGYPVLLKAVQGGGGKGIQVVKRPEDMIGLFQKTATEAAAAFGNGD 1137

Query: 165  QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
              L E+YV     +   ++ D       + +          K    + + +    +P ++
Sbjct: 1138 LYL-EKYVTSLRHIEVQLLRDKFGHAKVLGLRDCSVQRNNQKVVEESGSTM----LPDEL 1192

Query: 224  YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             K+V         A    G    +F+++  + +V+++E+N 
Sbjct: 1193 KKQVLAYTRALGDATDYMGAGTVEFIYNLDANEVYFMEMNT 1233


>gi|82524025|emb|CAI78703.1| carbamoylphosphate synthase large subunit [uncultured
           Flavobacteriaceae bacterium]
          Length = 374

 Score = 77.1 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 49/270 (18%), Positives = 102/270 (37%), Gaps = 53/270 (19%)

Query: 37  DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTH-----SGILASALSM 91
           D   ++ + L     DL   +      EDG +QA+ +   + Y         I   ++++
Sbjct: 66  DWVNNINIELEKFDIDLVMPIF-----EDG-IQALTKYKNLIYKGRYCVLPSIEDFSIAL 119

Query: 92  DKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKP-LKGGSSLGIIVIKKDQSI 150
           +K    + +S+  +    SI++          I+ P++IKP    G  +GI+    ++ I
Sbjct: 120 NKDLLTKHMSNNQIQASKSIVIKPGETFKNESINSPFLIKPTSNSGGGVGIVAFSNEKDI 179

Query: 151 PLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYE-LKYSSL 209
             +    + +      L+E+Y++G ++ C V+ D           K    +Y   K    
Sbjct: 180 E-NYFIENKFKIN--YLVEEYIEGYDICCNVLCD-----------KGKILAYTIHKGIMK 225

Query: 210 NSTHVLP-AKI----PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
                 P  ++       +YK++        +++   G++  D  +D  +++   +EIN 
Sbjct: 226 GGKIYGPSVELLFLYDDQLYKKI----VKLMESLNWYGVANIDIRYDERAKEFKVIEIN- 280

Query: 265 QPGMTPVSIFPEMA------AYAGYSFREL 288
                     P         A AG +F  L
Sbjct: 281 ----------PRFWYNVDASAIAGVNFPYL 300


>gi|289432887|ref|YP_003462760.1| carbamoyl-phosphate synthase, large subunit [Dehalococcoides sp.
           GT]
 gi|288946607|gb|ADC74304.1| carbamoyl-phosphate synthase, large subunit [Dehalococcoides sp.
           GT]
          Length = 1079

 Score = 77.1 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 34/194 (17%), Positives = 67/194 (34%), Gaps = 11/194 (5%)

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTMDSQHLISPPYVIKPLKG 135
           P   S   A  L+ D+ R ++++S  G+P  P   I      +     I  P V++P   
Sbjct: 654 PIIGSSAEAIDLAEDRRRFERLLSEMGIPQAPGAGITSLDEALSIADSIGYPVVVRPSYV 713

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195
                + ++     +   +  +   N G  +LI++Y+ G E+    + D         + 
Sbjct: 714 LGGRAMEIVSDASDLVRYMSAAIELNTGHPILIDKYLVGKEVEVDAIADGETVFIPGVME 773

Query: 196 KSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL- 253
             +           +S  V P   +       +        +A+  RG+    F+     
Sbjct: 774 HIERAGVHS----GDSMAVYPTQNLNEHDLATITDYTIRIGKALNVRGLMNIQFVVSKDP 829

Query: 254 ---SRKVFWLEINV 264
                 V+ LE+N 
Sbjct: 830 EGGDNIVYVLEVNP 843



 Score = 74.0 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 41/232 (17%), Positives = 84/232 (36%), Gaps = 9/232 (3%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMR 95
            S+  ++   +PD     L G  G +  V      +L    +    + I     + D+  
Sbjct: 69  ESITKIIEKERPDGLLPTLGGQTGLNLAVDLADAGVLAKYNVRSLGTPINTIRTAEDREL 128

Query: 96  SKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153
            K++++  G PV PS  V      +   H+I  P VI+P       G         +   
Sbjct: 129 FKELLTKIGEPVPPSETVTTAEDALRVAHMIGLPVVIRPAYTLGGTGGGFAHNWDEVEEV 188

Query: 154 LLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212
                + +   Q+L+E+ V G  E+   VM D + +   I     + +     ++  +  
Sbjct: 189 AQTGLNASPIHQILVEKSVAGWKEIEYEVMRDGADNCITIC--NMENFDPMGVHTGDSIV 246

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            V    +     + ++  +    +A+G  G        +P   + + +E+N 
Sbjct: 247 VVPVQTLTNKESQMLRTASIKIIRALGIEGGCNVQLSLNPNGNEYYVIEVNP 298


>gi|154484992|ref|ZP_02027440.1| hypothetical protein EUBVEN_02710 [Eubacterium ventriosum ATCC
           27560]
 gi|149733945|gb|EDM50064.1| hypothetical protein EUBVEN_02710 [Eubacterium ventriosum ATCC
           27560]
          Length = 451

 Score = 77.1 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 77/221 (34%), Gaps = 20/221 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  FG   E+     + E   I +            +K  +++ +    VPV P    
Sbjct: 77  AIHPGFGFLSENSKFARLCEQCNIIFIGPKSDVMYNLGNKSVARKTMIEANVPVIPGSEE 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS-----SSWNHGD 164
            I  ++        +  P +IK   GG   G+ V    +        +     ++++   
Sbjct: 137 QIYDSKTGKKIADQVGYPVIIKAALGGGGKGMRVAYDPEEFEQAFNAAKKESEAAFD-DG 195

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            + IE +V+    +   ++ D   +V  +            K    + + +    +  ++
Sbjct: 196 TMYIEHFVENPRHIEFQILADKFGNVIHLGERDCSIQRNHQKMIEESPSVI----LSDEL 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            K++   A  A +A         +FL D    K +++E+N 
Sbjct: 252 RKKMGDTAVRAAKAAKYENAGTIEFLLDK--DKFYFMEMNT 290


>gi|320354969|ref|YP_004196308.1| acetyl-CoA carboxylase, biotin carboxylase [Desulfobulbus
           propionicus DSM 2032]
 gi|320123471|gb|ADW19017.1| acetyl-CoA carboxylase, biotin carboxylase [Desulfobulbus
           propionicus DSM 2032]
          Length = 671

 Score = 77.1 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 91/221 (41%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E       ++   +      + A  +  DK+ SK++  + GVPV P    
Sbjct: 77  AIHPGYGFLSEKADFAQAIKDAGLVLIGPSVEAIDVMGDKITSKELAKNAGVPVIPGHIE 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS-----SWNHGD 164
            I   +  +     I  P ++KP  GG   G+ +++  + +   L  S      ++N   
Sbjct: 137 AIKDEKEAIAIAAEIGYPILLKPAAGGGGKGMRIVRAPEDMKEALEASRKETQKAFN-DT 195

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           ++ +E+Y++    +   V+ D+  +V  +   +    S + +Y  +      PA +  D+
Sbjct: 196 RVFVERYIEQPRHIEIQVLADSFGNVIHLGERE---CSIQRRYQKVIEESPSPA-VSPDL 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + + + A    +          +F+ D   ++ ++LE+N 
Sbjct: 252 RERMGKAACDLARQANYVNAGTVEFVLDAH-QQFYFLEMNT 291


>gi|270293313|ref|ZP_06199522.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Streptococcus
           sp. M143]
 gi|270278162|gb|EFA24010.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Streptococcus
           sp. M143]
          Length = 455

 Score = 77.1 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 75/220 (34%), Gaps = 16/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  FG   E+     + + + I +            DK+ +++ +   GVPV P    
Sbjct: 77  AIHPGFGFLSENSKFATMCDEVGIKFIGPSGAVMDTMGDKINAREQMIKAGVPVIPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
            +      +     I  P ++K   GG   GI  ++K + +      +SS          
Sbjct: 137 EVHTAEEALAVAEKIGYPVMLKASAGGGGKGIRKVEKAEDLVAAFETASSEAKANFGNGA 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+ +     +   ++ D    V  +            K             I   + 
Sbjct: 197 MYLERVIYPARHIEVQILADQEGHVIHLGERDCSLQRNNQKVL----EESPSIAIGKTLR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            E+   A  A +++G       +FL D  S   +++E+N 
Sbjct: 253 NEIGSAAVRAAESVGYENAGTIEFLLDEASGNFYFMEMNT 292


>gi|28197980|ref|NP_778294.1| acetyl-CoA carboxylase biotin carboxylase subunit [Xylella
           fastidiosa Temecula1]
 gi|182680606|ref|YP_001828766.1| acetyl-CoA carboxylase biotin carboxylase subunit [Xylella
           fastidiosa M23]
 gi|28056040|gb|AAO27943.1| biotin carboxylase [Xylella fastidiosa Temecula1]
 gi|182630716|gb|ACB91492.1| acetyl-CoA carboxylase, biotin carboxylase [Xylella fastidiosa M23]
 gi|307579062|gb|ADN63031.1| acetyl-CoA carboxylase biotin carboxylase subunit [Xylella
           fastidiosa subsp. fastidiosa GB514]
          Length = 455

 Score = 77.1 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 40/225 (17%), Positives = 82/225 (36%), Gaps = 27/225 (12%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+      +E     +         L  DK+++   + + GVP  P    
Sbjct: 77  AIHPGYGFLSENASFAERVEQSGFIFIGPRAETIRLMGDKVQAIHAMKAAGVPCVPGSDG 136

Query: 111 -----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWN 161
                I+ N   +     I  P +IK   GG   G+ V+  +  +   +     ++ +  
Sbjct: 137 PLGDDIVAN---VKIAREIGYPVIIKASGGGGGRGMRVVHTEAGLEAAIETTQCEAKAAF 193

Query: 162 HGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-I 219
              Q+ +E++++    +   V+ D   +   +            K          PA  I
Sbjct: 194 GNGQVYMEKFLENPRHVEIQVLADGQGNAIHLGERDCSMQRRHQK-----VVEEAPAPGI 248

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              +  E+ ++   A   IG RG    +FLF   + + +++E+N 
Sbjct: 249 TEALRNEIGQVCVDACIRIGYRGAGTFEFLF--ENGRFYFIEMNT 291


>gi|333031058|ref|ZP_08459119.1| ATP-grasp fold domain protein, DUF201-type [Bacteroides coprosuis
           DSM 18011]
 gi|332741655|gb|EGJ72137.1| ATP-grasp fold domain protein, DUF201-type [Bacteroides coprosuis
           DSM 18011]
          Length = 371

 Score = 77.1 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 31/186 (16%), Positives = 79/186 (42%), Gaps = 10/186 (5%)

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGV-PVCPSILVNRFTMDSQHLISPPYVIKPLKGGS 137
           +       +  + +K++ ++ +      P     ++N  T       + P +IKP     
Sbjct: 88  FNGISYSTALKATNKVKMRRCIEKHRACPQPHFEILNESTYSID---TFPVIIKPSDSSC 144

Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKS 197
           S G+  +   + + + +  + S ++  ++L+E+Y++G E++   +   +         K 
Sbjct: 145 SNGVSKVTCQEELDVAIRNAFSASNQHEVLVEEYIEGKEISVESISFHNKHYILTITDKE 204

Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR-GISRSDFLFDPLSRK 256
              +       + + H  P+++ LD+ K+++        AIG   G + S+F  D     
Sbjct: 205 TTGAPH----FVETAHHQPSQLNLDLQKKIKTYTNNILNAIGISNGAAHSEFKIDA-DGN 259

Query: 257 VFWLEI 262
           V+++E+
Sbjct: 260 VYFIEV 265


>gi|284161164|ref|YP_003399787.1| acetyl-CoA carboxylase, biotin carboxylase [Archaeoglobus profundus
           DSM 5631]
 gi|284011161|gb|ADB57114.1| acetyl-CoA carboxylase, biotin carboxylase [Archaeoglobus profundus
           DSM 5631]
          Length = 504

 Score = 77.1 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 36/219 (16%), Positives = 72/219 (32%), Gaps = 17/219 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       E   I +        A    K+ +++++   G+PV P    
Sbjct: 77  AIHPGYGFLAENPEFAKRCEEEGIVFIGPSSDVIAKMGSKVMARKLMQEAGLPVVPGSPA 136

Query: 114 NRF---TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGDQL 166
                        I  P  IK   GG  +GI ++  +  +             +     +
Sbjct: 137 LEDVDSAFKWAEKIGYPVAIKASGGGGGIGITIVNSEDELEQAFYKSKKLGEKYFGDATV 196

Query: 167 LIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
            IE+Y+     +   V+ D   +V  +   +        K             +  +  +
Sbjct: 197 YIEKYLPKPRHIEFQVLADEHGNVIHLGERECSIQRRHQK----LIEECPSPAVDDETRE 252

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           E+ +L     + IG       +FL+     K ++LE+N 
Sbjct: 253 EMGKLVVKGTKYIGYTNAGTMEFLY--QDGKFYFLEMNT 289


>gi|261405694|ref|YP_003241935.1| carbamoyl-phosphate synthase large subunit [Paenibacillus sp.
           Y412MC10]
 gi|261282157|gb|ACX64128.1| carbamoyl-phosphate synthase, large subunit [Paenibacillus sp.
           Y412MC10]
          Length = 1068

 Score = 77.1 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 48/286 (16%), Positives = 108/286 (37%), Gaps = 33/286 (11%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQIDVDRS---------------------VGLV 45
           G ++E + +   G     AL++ G +V  I+ + +                     V  +
Sbjct: 21  GQAAEFDYA---GTQACQALKEEGMEVVLINSNPATIMTDTNMADKVYIEPITLDFVTQI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   +PD     L G  G +  V+     ILE   +    + + +   + D+   ++++ 
Sbjct: 78  IRQERPDGLLPTLGGQTGLNMAVELARAGILEQENVKLLGTQLESIEKAEDRDLFRELMR 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
               PV  S +V      ++  + I  P +++P       G  +   ++ +   +     
Sbjct: 138 ELDQPVPESTIVTTLEEALEFANEIGYPVIVRPAYTLGGTGGGICATEEELRETVSSGLR 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
           ++   Q LIE+ + G  E+   VM DA+ +   I V   + +     ++  +        
Sbjct: 198 YSPITQCLIEKSIAGMKEVEYEVMRDANDN--CIVVCNMENFDPVGVHTGDSIVVAPSQT 255

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +    Y+ ++  +    +A+   G     F  DP S + + +E+N 
Sbjct: 256 LSDREYQMLRSASLKIIRALNIEGGCNVQFALDPNSYQYYVIEVNP 301



 Score = 74.4 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 40/291 (13%), Positives = 101/291 (34%), Gaps = 32/291 (10%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHG--------NFGEDGL 67
           A++ AG++   I         D + S  L    L  +   NV+           FG    
Sbjct: 588 AIQKAGYEAVIINNNPETVSTDFNTSDRLYFEPLFFEDVMNVIEQEKPIGVIVQFGGQTA 647

Query: 68  VQAI--LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHL 123
           +     L    +    + + +   + D+ + + ++S   +       V      +++   
Sbjct: 648 INLAEPLSKAGVKILGTSLESIDEAEDRKKFEALLSRLEIAQPKGKTVTSVDDAVETAQS 707

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           +  P +++P        + ++  D  +   + ++   N    +LI++Y+ G E+    + 
Sbjct: 708 LGYPVLVRPSYVLGGRAMEIVYSDSELLSYMKEAVKINPDHPVLIDRYMMGKEVEVDAIC 767

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRG 242
           D    +    +   +           +S  V P + +  D+  ++  +     + +  RG
Sbjct: 768 DGETVLIPGIMEHVERAGVHS----GDSIAVYPPQYLSQDLKDKIAEITIKIAKELNTRG 823

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+      +V+ +E+N +   T     P ++   G     L    +
Sbjct: 824 LVNIQFVIYK--NEVYVIEVNPRSSRT----VPFLSKVTGIPMANLATQAI 868


>gi|319427589|gb|ADV55663.1| acetyl-CoA carboxylase multifunctional enzyme, AccADCB [Shewanella
            putrefaciens 200]
          Length = 1517

 Score = 77.1 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 85/221 (38%), Gaps = 18/221 (8%)

Query: 57   VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
             LH   G   E     A+     + +    + +     +K  + +   +  VPV P    
Sbjct: 1018 ALHPGIGFLSESPQFAALCVNNGVNFVGPSVHSMTTMGNKSNAIKTSQAQNVPVVPGSHG 1077

Query: 111  -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI-----PLDLLQSSSWNHGD 164
             +      ++    I  P ++K ++GG   GI V+K+ + +           ++++ +GD
Sbjct: 1078 ILTNAEQAVNVASEIGYPVLLKAVQGGGGKGIQVVKRPEDMIGLFQKTATEAAAAFGNGD 1137

Query: 165  QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
              L E+YV     +   ++ D   +   + +          K    + + +    +P ++
Sbjct: 1138 LYL-EKYVTSLRHIEVQLLRDKFGNAKVLGLRDCSVQRNNQKVVEESGSTM----LPDEL 1192

Query: 224  YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             K+V         A    G    +F+++  + +V+++E+N 
Sbjct: 1193 KKQVLDYTRALGDATDYMGAGTVEFIYNLDANEVYFMEMNT 1233


>gi|224823423|ref|ZP_03696532.1| acetyl-CoA carboxylase, biotin carboxylase [Lutiella nitroferrum
           2002]
 gi|224603878|gb|EEG10052.1| acetyl-CoA carboxylase, biotin carboxylase [Lutiella nitroferrum
           2002]
          Length = 450

 Score = 77.1 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 83/222 (37%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+      +E     +         L  DK+ +K+ + + GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAERVEQSGFAFIGPRPDTIRLMGDKVSAKESMIAAGVPCVPGSDG 136

Query: 111 -ILVNRFTMDS-QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGD 164
            +  +   + +    I  P +IK   GG   G+ V+ ++Q +   +     ++ +     
Sbjct: 137 ALPDDPGAIAATARRIGYPVIIKAAGGGGGRGMRVVHQEQDLLTSVETTRSEAGAAFGNP 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E++++    +   V+ D       +            K          PA  I  +
Sbjct: 197 TVYMEKFLEQPRHIEIQVLADQHGHAIYLGERDCSMQRRHQK-----VIEEAPAPGISAE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +++      A + IG RG    +FLF   + + +++E+N 
Sbjct: 252 QRRQIGEACADACRRIGYRGAGTFEFLF--ENGEFYFIEMNT 291


>gi|293366897|ref|ZP_06613573.1| pyruvate carboxylase [Staphylococcus epidermidis M23864:W2(grey)]
 gi|291319198|gb|EFE59568.1| pyruvate carboxylase [Staphylococcus epidermidis M23864:W2(grey)]
          Length = 1151

 Score = 77.1 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 32/221 (14%), Positives = 77/221 (34%), Gaps = 20/221 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+           I +    +    +  DK++++    +  +PV P    
Sbjct: 84  AIHPGYGFLSENEQFARRCAEEGIKFIGPHLEHLDMFGDKVKARTTAINANLPVIPGTDG 143

Query: 114 NRFTMDSQHLI----SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
              + ++          P +IK   GG   G+ ++++   +     ++ S         +
Sbjct: 144 PIESFEAAEQFANEAGYPLMIKATSGGGGKGMRIVRESSELEDAFHRAKSEAEKSFGNSE 203

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDI 223
           + IE+Y+D    +   V+GD   ++  +           ++        V P   +   +
Sbjct: 204 VYIERYIDNPKHIEVQVIGDEFGNIIHLYE-----RDCSVQRRHQKVVEVAPSVGLSNKL 258

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +   A    + I        +FL      + F++E+N 
Sbjct: 259 RERICDAAIQLMENIKYVNAGTVEFLV--SGDEFFFIEVNP 297


>gi|150400899|ref|YP_001324665.1| carbamoyl-phosphate synthase, large subunit [Methanococcus aeolicus
           Nankai-3]
 gi|150013602|gb|ABR56053.1| carbamoyl-phosphate synthase, large subunit [Methanococcus aeolicus
           Nankai-3]
          Length = 1061

 Score = 77.1 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 48/278 (17%), Positives = 103/278 (37%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQID---------------------VDRSVGLVLAHLKPDLAFN 56
           SG     AL++ G+++  ++                     V   V  ++   +PD    
Sbjct: 29  SGSQACKALKELGYEIVLVNSNPATIMTDPEMADEIYIEPLVPEVVEKIIEKEQPDAILP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G    +  V+     IL+   +    + + A   + D+   K+     GV V  S +
Sbjct: 89  TLGGQTALNLAVELADKGILDKYGVELIGAKLDAIRKAEDRELFKEACKKVGVDVLKSEV 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                 ++     +  P V++P       G  V    + +     +   ++  +Q+LIE+
Sbjct: 149 AYTVEESLSIAEKLGYPVVVRPAFTLGGTGGGVAFNPEELKSIASKGLEYSLKNQILIEE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + +V  +   ++ D           +S  V P + +  + Y+ +
Sbjct: 209 SIIGWKEYEYEVIRDLNDNVIIVCTIENIDPMGIHT----GDSITVAPTQTLSDEEYQLL 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RDYSIKIIREIGVETGGSNIQFAVNPENGRIVAIEMNP 302



 Score = 42.8 bits (100), Expect = 0.058,   Method: Composition-based stats.
 Identities = 39/291 (13%), Positives = 103/291 (35%), Gaps = 31/291 (10%)

Query: 23  ASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ--AI 71
             +L++ GF+   +         D D +  L    L P+   N++        ++Q    
Sbjct: 583 IKSLKEEGFETIMVNCNPETVSTDFDLADKLYFEPLYPEDVLNIIEKENPYGVVIQVGGQ 642

Query: 72  LELLEIPY------THSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTMDSQHL 123
             L    Y        +   +  L  D+ +   +++   +   P+ +V   +  ++    
Sbjct: 643 TPLNLSKYISDNMIVGTPKESIDLVEDREKFSNILNELKILQPPNGIVFDEKTAVEVAEK 702

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVM 182
           I  P +++P        + ++  ++ +   + ++   +    +LI++++ D IE+    +
Sbjct: 703 IGYPVLVRPSYVIGGRAMHIVYNNEELKKYMKEAVMVSPELPILIDKFLEDAIEVDVDAI 762

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCR 241
            D         +   +    E    S +S  V+P + +  +    ++         +  +
Sbjct: 763 CDGEDVFIGGIMEHIE----EAGIHSGDSACVIPTQTLSNETLNIIKDYTKKLSLKLKIK 818

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           G+    +        V+ LE N +   T     P ++   G S  ++   +
Sbjct: 819 GLINIQYAI--KDNTVYVLEANPRASRT----IPYLSKAIGISLAKIAAKI 863


>gi|329922673|ref|ZP_08278225.1| carbamoyl-phosphate synthase, large subunit [Paenibacillus sp.
           HGF5]
 gi|328942015|gb|EGG38298.1| carbamoyl-phosphate synthase, large subunit [Paenibacillus sp.
           HGF5]
          Length = 1068

 Score = 77.1 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 48/286 (16%), Positives = 108/286 (37%), Gaps = 33/286 (11%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQIDVDRS---------------------VGLV 45
           G ++E + +   G     AL++ G +V  I+ + +                     V  +
Sbjct: 21  GQAAEFDYA---GTQACQALKEEGMEVVLINSNPATIMTDTNMADKVYIEPITLDFVTQI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   +PD     L G  G +  V+     ILE   +    + + +   + D+   ++++ 
Sbjct: 78  IRQERPDGLLPTLGGQTGLNMAVELARAGILEQENVKLLGTQLESIEKAEDRDLFRELMR 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
               PV  S +V      ++  + I  P +++P       G  +   ++ +   +     
Sbjct: 138 ELDQPVPESTIVTTLEEALEFANEIGYPVIVRPAYTLGGTGGGICATEEELRETVSSGLR 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
           ++   Q LIE+ + G  E+   VM DA+ +   I V   + +     ++  +        
Sbjct: 198 YSPITQCLIEKSIAGMKEVEYEVMRDANDN--CIVVCNMENFDPVGVHTGDSIVVAPSQT 255

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +    Y+ ++  +    +A+   G     F  DP S + + +E+N 
Sbjct: 256 LSDREYQMLRSASLKIIRALNIEGGCNVQFALDPNSYQYYVIEVNP 301



 Score = 74.4 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 40/291 (13%), Positives = 101/291 (34%), Gaps = 32/291 (10%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHG--------NFGEDGL 67
           A++ AG++   I         D + S  L    L  +   NV+           FG    
Sbjct: 588 AIQKAGYEAVIINNNPETVSTDFNTSDRLYFEPLFFEDVMNVIEQEKPIGVIVQFGGQTA 647

Query: 68  VQAI--LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHL 123
           +     L    +    + + +   + D+ + + ++S   +       V      +++   
Sbjct: 648 INLAEPLSKAGVKILGTSLESIDEAEDRKKFEALLSRLEIAQPKGKTVTSVDDAVETAQS 707

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           +  P +++P        + ++  D  +   + ++   N    +LI++Y+ G E+    + 
Sbjct: 708 LGYPVLVRPSYVLGGRAMEIVYSDSELLSYMKEAVKINPDHPVLIDRYMMGKEVEVDAIC 767

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRG 242
           D    +    +   +           +S  V P + +  D+  ++  +     + +  RG
Sbjct: 768 DGETVLIPGIMEHVERAGVHS----GDSIAVYPPQYLSQDLKDKIAEITIKIAKELNTRG 823

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+      +V+ +E+N +   T     P ++   G     L    +
Sbjct: 824 LVNIQFVIYK--NEVYVIEVNPRSSRT----VPFLSKVTGIPMANLATQAI 868


>gi|329906596|ref|ZP_08274448.1| Urea carboxylase [Oxalobacteraceae bacterium IMCC9480]
 gi|327547234|gb|EGF32086.1| Urea carboxylase [Oxalobacteraceae bacterium IMCC9480]
          Length = 1203

 Score = 77.1 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 36/257 (14%), Positives = 84/257 (32%), Gaps = 34/257 (13%)

Query: 58  LHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
           +H  +G   E+           + +             K  ++++     VP+ P   + 
Sbjct: 78  IHPGYGFLSENAAFAEACAAAGVVFIGPTPHQLRAFGLKHTARELAQQANVPLLPGTGLL 137

Query: 115 RF---TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGDQL 166
                 + S   I  P ++K   GG  +G+ + +  Q +         L  +++ +G  +
Sbjct: 138 DDVAQALTSATQIGYPVMLKSTAGGGGIGMRLCRDAQELEAAYTSVKHLSENNFKNGG-I 196

Query: 167 LIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIY 224
            +E++V+    +   + GD         V         ++          PA  +     
Sbjct: 197 YLEKFVEHARHVEVQIFGDG-----RGGVVSLGERDCSVQRRHQKVIEETPAPGLSDATR 251

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
             +   A     ++  R     +++ D  S   ++LE+N             +    G +
Sbjct: 252 TALAETAVRLTASLSYRSAGTVEYVLDADSGAFYFLEVNT-----------RLQVEHGVT 300

Query: 285 FR----ELLLWMVEDAS 297
                 +L+ WM+  A+
Sbjct: 301 EEVFGVDLVEWMIRAAT 317


>gi|311696113|gb|ADP98986.1| acetyl-CoA carboxylase biotin carboxylase subunit [marine bacterium
           HP15]
          Length = 448

 Score = 77.1 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 32/218 (14%), Positives = 76/218 (34%), Gaps = 20/218 (9%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI--LVN-- 114
           +G   E+      +E     +         L  +K+ +   +   GVP  P     ++  
Sbjct: 84  YGFLAENADFAEQVEKSGFRFIGPKAETIRLMGNKVSAINAMIKAGVPTVPGSDGPLDDD 143

Query: 115 -RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGDQLLI 168
              T+     I  P +IK   GG   G+ V+  + ++   +        +++     + +
Sbjct: 144 EERTLRIAKEIGYPVMIKAASGGGGRGMQVVHSEAALLKGVQITQSEAKNAFG-DPTVYL 202

Query: 169 EQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKE 226
           E++++    +   V+ D   +               ++  +       PA  I  +  + 
Sbjct: 203 EKFLEAPRHVEVQVLADMHGNCI-----HLGDRDCSMQRRNQKVIEEAPAPNINPESRER 257

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +    A + IG  G    +FL+     + +++E+N 
Sbjct: 258 TLKACTDACKEIGYVGAGTFEFLY--QDGEFYFIEMNT 293


>gi|282876433|ref|ZP_06285300.1| pyruvate carboxylase [Staphylococcus epidermidis SK135]
 gi|281295458|gb|EFA87985.1| pyruvate carboxylase [Staphylococcus epidermidis SK135]
 gi|329732701|gb|EGG69050.1| pyruvate carboxylase [Staphylococcus epidermidis VCU144]
 gi|329736222|gb|EGG72494.1| pyruvate carboxylase [Staphylococcus epidermidis VCU028]
          Length = 1149

 Score = 77.1 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 32/221 (14%), Positives = 77/221 (34%), Gaps = 20/221 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+           I +    +    +  DK++++    +  +PV P    
Sbjct: 80  AIHPGYGFLSENEQFARRCAEEGIKFIGPHLEHLDMFGDKVKARTTAINANLPVIPGTDG 139

Query: 114 NRFTMDSQHLI----SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
              + ++          P +IK   GG   G+ ++++   +     ++ S         +
Sbjct: 140 PIESFEAAEQFANEAGYPLMIKATSGGGGKGMRIVRESSELEDAFHRAKSEAEKSFGNSE 199

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDI 223
           + IE+Y+D    +   V+GD   ++  +           ++        V P   +   +
Sbjct: 200 VYIERYIDNPKHIEVQVIGDEFGNIIHLYE-----RDCSVQRRHQKVVEVAPSVGLSNKL 254

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +   A    + I        +FL      + F++E+N 
Sbjct: 255 RERICDAAIQLMENIKYVNAGTVEFLV--SGDEFFFIEVNP 293


>gi|225869131|ref|YP_002745079.1| biotin carboxylase subunit of acetyl-CoA carboxylase [Streptococcus
           equi subsp. zooepidemicus]
 gi|225702407|emb|CAX00269.1| biotin carboxylase subunit of acetyl-CoA carboxylase [Streptococcus
           equi subsp. zooepidemicus]
          Length = 454

 Score = 77.1 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 76/220 (34%), Gaps = 16/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  FG   E+     + E + I +            DK+ ++  +   GVPV P    
Sbjct: 77  AIHPGFGFLSENSKFVTMCEEMNIKFIGPSGAVMDKMGDKINARAEMIKAGVPVIPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG----DQ 165
            +   +  ++    I  P ++K   GG   GI  ++ +  +      +S    G      
Sbjct: 137 EVYNAQEALEVARRIGYPVMLKAAAGGGGKGIRKVESEADLEAAFNAASQEALGAFGNGA 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+ +     +   ++GD+   V  +            K             I   + 
Sbjct: 197 MYLEKVIYPARHIEVQILGDSQGHVIHLGERDCSLQRNNQKVL----EESPSIAIGTTLR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +   A  A +A+        +FL D  S   +++E+N 
Sbjct: 253 QRMGEAAVRAAKAVSYENAGTIEFLLDEASGDFYFMEMNT 292


>gi|160933777|ref|ZP_02081165.1| hypothetical protein CLOLEP_02638 [Clostridium leptum DSM 753]
 gi|156867654|gb|EDO61026.1| hypothetical protein CLOLEP_02638 [Clostridium leptum DSM 753]
          Length = 1355

 Score = 77.1 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 51/286 (17%), Positives = 103/286 (36%), Gaps = 33/286 (11%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQIDVD---------------------RSVGLV 45
           G ++E + +   G     AL + G +V  ++ +                      +V  +
Sbjct: 21  GQAAEFDYA---GTQACRALREEGLEVVLVNSNPATIMTDNAMADKIYIEPLTLETVKRI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   KPD   + L G  G    +Q      LE   +    +       + D+   K  + 
Sbjct: 78  IKKEKPDSLLSTLGGQTGLTLSMQLAKEGFLEENGVTLLGANPETIDKAEDRQMFKDTME 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
           S G P  PS +VN     +D  + I  P +I+P       G  +++ ++ +         
Sbjct: 138 SIGQPCIPSKVVNTVEGAVDFANEIGYPLIIRPAFTLGGSGGGIVENEEELREITENGLR 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   Q+L+E+ V G  E+   V+ D+  +V  I V   + +     ++  +        
Sbjct: 198 LSPITQVLVEKCVSGWKEIEFEVIRDSKGNV--ITVCSMENFDPVGVHTGDSIVIAPAVT 255

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +    Y+ ++  A      +   G     F  +P S +   +E+N 
Sbjct: 256 LADQEYQMLRSAALDIINVLKVEGGCNVQFALNPDSFEYAVIEVNP 301



 Score = 72.5 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 49/289 (16%), Positives = 104/289 (35%), Gaps = 32/289 (11%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH---------GNFGEDG 66
           AL+ AG++V  +         D D S  L    L P+    V+H            G+  
Sbjct: 578 ALKKAGYEVVIVNNNPETVSTDFDTSDRLYFEPLTPEDVMGVIHTEKPYGVVVAFGGQTA 637

Query: 67  -LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTMDSQHL 123
             +   L+   I    +   +  ++ D+ R  +++    V       V      ++  + 
Sbjct: 638 IKLAKFLDDQGINVLGTSFDSIDMAEDRERFDELLEKHHVKRAEGFTVMTTEEALEVANR 697

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        +I+   D  I   +    +    + +LI++Y+ G EL    + 
Sbjct: 698 IGYPVLMRPSYVLGGQNMIIAFNDADIKEYMAIILAQEIENPILIDKYLMGTELEVDAIC 757

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRG 242
           D      +I +P    +       S +S  V PA  I   +  ++   +     ++  +G
Sbjct: 758 DGE----DILIPGIMEHIERTGVHSGDSIAVYPAWNINDVMTDKIIESSRNLAISLNTKG 813

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    +L      +++ +E+N +   T     P ++   G    +L   
Sbjct: 814 LVNIQYLI--YHNELYVIEVNPRSSRT----IPYISKVTGVPMVDLATR 856


>gi|49478295|ref|YP_036654.1| acetyl-CoA carboxylase biotin carboxylase subunit [Bacillus
           thuringiensis serovar konkukian str. 97-27]
 gi|228915132|ref|ZP_04078729.1| Biotin carboxylase [Bacillus thuringiensis serovar pulsiensis BGSC
           4CC1]
 gi|49329851|gb|AAT60497.1| propionyl-CoA carboxylase [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|228844561|gb|EEM89615.1| Biotin carboxylase [Bacillus thuringiensis serovar pulsiensis BGSC
           4CC1]
          Length = 445

 Score = 77.1 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 80/220 (36%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       +   I +             K+ S+  + +  VPV P I  
Sbjct: 77  AIHPGYGLLSENPSFPVRCKEEGIVFIGPSEEIITKMGSKIESRIAMQAADVPVVPGITT 136

Query: 114 N----RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
           N       ++    I  P ++K   GG  +G+ +++ +Q++         ++ ++    +
Sbjct: 137 NIETAEEAIEIAKQIGYPLMLKASAGGGGIGMQLMETEQTLTKAFESNKTRAQNFFGNGE 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+Y+ D   +   ++ D   +   +   +        K             +     
Sbjct: 197 MYLERYIADAHHIEIQLLADTHGNTVYLWERECSVQRRNQK----VIEEAPSPFLDEGTR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K +  +A  A +A+G       +FL D      ++LE+N 
Sbjct: 253 KAMGEIAVQAAKALGYTNAGTVEFLVDDQKN-FYFLEMNT 291


>gi|17562816|ref|NP_505977.1| PYruvate Carboxylase family member (pyc-1) [Caenorhabditis elegans]
 gi|74957739|sp|O17732|PYC1_CAEEL RecName: Full=Pyruvate carboxylase 1; AltName: Full=Pyruvic
           carboxylase 1; Short=PCB 1
 gi|7331216|gb|AAF60326.1|AF237467_1 pyruvate carboxylase [Caenorhabditis elegans]
 gi|3875406|emb|CAB02872.1| C. elegans protein D2023.2, confirmed by transcript evidence
           [Caenorhabditis elegans]
          Length = 1175

 Score = 77.1 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 79/220 (35%), Gaps = 19/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E     A  +   I +        A   DK+ ++Q     GV V P    
Sbjct: 108 AIHPGYGFLSERSDFAAACQNAGIVFIGPSPDVMARMGDKVAARQAAIEAGVQVVPGTPG 167

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
            I      ++       P ++K   GG   GI  + K + +         ++ +      
Sbjct: 168 PITTADEAVEFAKQYGTPIILKAAYGGGGRGIRRVDKLEEVEEAFRRSYSEAQAAFGDGS 227

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           L +E++V+    +   ++GD   ++  +           ++        + PA  +P  +
Sbjct: 228 LFVEKFVERPRHIEVQLLGDHHGNIVHLYE-----RDCSVQRRHQKVVEIAPAPALPEGV 282

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            +++   A    + +G +     +FL D      +++E+N
Sbjct: 283 REKILADALRLARHVGYQNAGTVEFLVDQKGN-YYFIEVN 321


>gi|99081710|ref|YP_613864.1| carbamoyl-phosphate synthase L chain, ATP-binding [Ruegeria sp.
           TM1040]
 gi|99037990|gb|ABF64602.1| Carbamoyl-phosphate synthase L chain ATP-binding [Ruegeria sp.
           TM1040]
          Length = 676

 Score = 77.1 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 77/221 (34%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      LE   + +      A     DK+ SK++    GV   P  + 
Sbjct: 77  AVHPGYGFLSENAKFAEALEAAGVAFVGPPKGAIEAMGDKITSKKIAQEAGVSTVPGYMG 136

Query: 114 NRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGD 164
                D      + I  P +IK   GG   G+ +   D+             ++S+   D
Sbjct: 137 LIADADEAVKISNEIGYPVMIKASAGGGGKGMRIAWTDEEAREGFQSSKNEAANSFG-DD 195

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           ++ IE++V     +   V+ DA  +   +   +        K             +  + 
Sbjct: 196 RIFIEKFVTQPRHIEIQVLCDAHGNGVYLGERECSIQRRNQK----VVEEAPSPFLDEET 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +   +    +A+G       +F+ D   +  ++LE+N 
Sbjct: 252 RRAMGEQSVALAKAVGYASAGTVEFIVDG-DKNFYFLEMNT 291


>gi|325295527|ref|YP_004282041.1| acetyl-CoA carboxylase, biotin carboxylase [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325065975|gb|ADY73982.1| acetyl-CoA carboxylase, biotin carboxylase [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 472

 Score = 77.1 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 44/283 (15%), Positives = 99/283 (34%), Gaps = 43/283 (15%)

Query: 19  GKACASALEDAGF---------KVSQIDVDRSVGLVLAHLKPDLAFN------------- 56
                 A ++ G           V+ + V ++    L H  P  A+              
Sbjct: 14  ATRVIRACKELGIKTVAIYSEADVNSLHVKKADEAYLIHGDPIKAYLNYYKIVDIAKRAG 73

Query: 57  --VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS- 110
              +H  +G   E            I +    +    +  +K+ +K+++   GVPV    
Sbjct: 74  AEAIHPGYGFLSERADFAEYARRHGIEFIGPDVKHLKMFGNKIEAKKLMKELGVPVAEGS 133

Query: 111 ---ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL----DLLQSSSWNHG 163
              +       +    I  P +IK   GG   G+ V++ ++ + +     L ++ +    
Sbjct: 134 EEPVADLGEAKEIARKIGYPVMIKAAHGGGGRGLRVVRNEKELEVQFKIALSEAEAAFGK 193

Query: 164 DQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPL 221
            ++ IE+Y++    +   ++ D   +V              L+        + P+  +  
Sbjct: 194 GEIFIEKYIENPRHIEIQIVADKHGNVV-----HLGERDCSLQRRHQKVLEIAPSPVLTR 248

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              + + ++   A +AIG  G+   +FL D      +++E+N 
Sbjct: 249 RQRERLGKICVEAAKAIGYYGVGTWEFLMDKYGN-FYFMEVNP 290


>gi|53713459|ref|YP_099451.1| phosphoribosylglycinamide formyltransferase 2 [Bacteroides fragilis
           YCH46]
 gi|81608482|sp|Q64UB2|PURT_BACFR RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|52216324|dbj|BAD48917.1| phosphoribosylglycinamide formyltransferase 2 [Bacteroides fragilis
           YCH46]
          Length = 388

 Score = 77.1 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 44/254 (17%), Positives = 86/254 (33%), Gaps = 36/254 (14%)

Query: 32  KVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSM 91
           +V  +     +  ++   +PD+    +     E         L +       ++ SA ++
Sbjct: 46  EVFDMLNGEELERIVKKHRPDIIVPEIEAIRTE--------RLYDFEKEGIQVVPSARAV 97

Query: 92  D-----KMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVI 144
           +     K          G+               ++  +I  P V+KPL   S  G  ++
Sbjct: 98  NYTMNRKAIRDLAAKELGLKTAKYYYAKSLEELKEAAEIIGFPCVVKPLMSSSGKGQSLV 157

Query: 145 KKDQSIPLDLLQSSSWNHGD--QLLIEQYVDGIE----LTCGVMGDASLDVTEIA-VPKS 197
           K    +        + + GD  +L+IE+++        LT       +L    I  V K 
Sbjct: 158 KSAAELEHAWEYGCNGSRGDIRELIIEEFIKFDSEITLLTVTQKNGPTLFCPPIGHVQKG 217

Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
             Y               PA I     KE + +A    +A+   G+   +F     +  V
Sbjct: 218 GDY----------RESFQPAHIDPAHLKEAEDMAEKVTRALTGAGLWGVEFFLSHENG-V 266

Query: 258 FWLEINVQP---GM 268
           ++ E++ +P   GM
Sbjct: 267 YFSELSPRPHDTGM 280


>gi|294140051|ref|YP_003556029.1| acetyl-CoA carboxylase, biotin carboxylase [Shewanella violacea
           DSS12]
 gi|293326520|dbj|BAJ01251.1| acetyl-CoA carboxylase, biotin carboxylase, putative [Shewanella
           violacea DSS12]
          Length = 705

 Score = 77.1 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 80/221 (36%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       E   I +      A      K  +K ++ +  VP+ P    
Sbjct: 82  AIHPGYGFLSENAEFARKCEQAGIIFVGPTADAIDSMGSKSAAKDIMGAANVPLVPGYHG 141

Query: 114 NRFT----MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS----IPLDLLQSSSWNHGDQ 165
           +       +   + +  P +IK   GG   G+ +++        I     ++SS    D+
Sbjct: 142 DAQDDALLVKEANKMGFPLLIKATYGGGGKGMRIVESSAEVLENIHSARREASSSFGNDK 201

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           LL+E+Y+     +   V  D   +   ++           K          PA  +  ++
Sbjct: 202 LLMERYLRQPRHVEVQVFADNYGNCIYLSDRDCSIQRRHQK-----VVEEAPAPGLSDEL 256

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             E+   A  A +AI  RG    +FL D      +++E+N 
Sbjct: 257 RAEMGEAAVAAAKAIDYRGAGTIEFLLDT-DNSFYFMEMNT 296


>gi|254293852|ref|YP_003059875.1| carbamoyl-phosphate synthase L chain ATP-binding [Hirschia baltica
           ATCC 49814]
 gi|254042383|gb|ACT59178.1| Carbamoyl-phosphate synthase L chain ATP-binding [Hirschia baltica
           ATCC 49814]
          Length = 673

 Score = 77.1 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 42/240 (17%), Positives = 83/240 (34%), Gaps = 16/240 (6%)

Query: 34  SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDK 93
           S I +D+ +   +     D      +G   E+      L  L++ +      A     DK
Sbjct: 59  SYIVIDK-IIEAIKQSGADAVHPG-YGFLSENSEFSKKLAKLKVAFIGPNPKAIEAMGDK 116

Query: 94  MRSKQVVSSCGVPVCPSILVNRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQS 149
           + SK++    GV   P  +      D+     + I  P +IK   GG   G+ +   D+ 
Sbjct: 117 ITSKKLAQQAGVSTVPGHMGLIENSDAAVKISNKIGYPVMIKASAGGGGKGMRIAWNDEE 176

Query: 150 IPLDLL----QSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYEL 204
                     ++ S    D++ IE++V     +   V+GD   ++  +   +        
Sbjct: 177 AREGFQSSKNEAKSSFGDDRIFIEKFVTQPRHIEIQVLGDKHGNIIYLGERECSIQRRNQ 236

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K             +     K +   A    +A+        +F+ D   +  ++LE+N 
Sbjct: 237 K----VIEEAPSPFLDEVTRKAMGEEAVSLARAVNYDSAGTVEFIVDG-DKNFYFLEMNT 291


>gi|115397487|ref|XP_001214335.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
 gi|114192526|gb|EAU34226.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
          Length = 389

 Score = 77.1 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 63/320 (19%), Positives = 107/320 (33%), Gaps = 47/320 (14%)

Query: 18  SGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLA--------------------FNV 57
           SG   A  L   G  V   +V  S         PD A                    FN 
Sbjct: 63  SGADIAYNLRAKGVTVVTPEVHPSDRDHEGWCFPDTAEGIQRAVQKGATHLWANTILFNS 122

Query: 58  LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--SILVNR 115
            H     D  + A    L +              DK    + +   G    P   I+ + 
Sbjct: 123 -HPLQASD-TLNAFASSLYV--VGQPPGLVENFDDKAYLNRKLGQMGGFTLPRSWIITSS 178

Query: 116 FTMDS--QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
             +DS  + +   P V KP++G  S G+ V      +   L   + +     +++E+++ 
Sbjct: 179 DDVDSVIRSIGQYPVVGKPIRGRGSHGVKVCHSATDLRQHL--EALFRESPTVMVEEFLS 236

Query: 174 GIELTCGVMGDASLDV---TEIAVPKSDFYSYELKYS-----SLNSTHVLPAKIPLDIYK 225
           G E T  VM  +       +   V + +       Y+     + NS  V P ++    + 
Sbjct: 237 GEEATVTVMPPSPDRPEYWSMPPVVRFNHADGIAPYNGVVAVTANSRTVSPVEMGDASFT 296

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT---------PVSIFPE 276
           E+ R +    + IG     R D        +    +IN++P MT           S+   
Sbjct: 297 ELMRQSARVAEVIGATAPIRVDARRFEPGSRFALFDINMKPNMTGPGRPGREDQASLTAL 356

Query: 277 MAAYAGYSFRELLLWMVEDA 296
            AA  G+ +  LL  +++ A
Sbjct: 357 AAAAIGWDYPTLLQRILQCA 376


>gi|315924033|ref|ZP_07920260.1| pyruvate carboxylase [Pseudoramibacter alactolyticus ATCC 23263]
 gi|315622659|gb|EFV02613.1| pyruvate carboxylase [Pseudoramibacter alactolyticus ATCC 23263]
          Length = 1145

 Score = 77.1 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 37/243 (15%), Positives = 86/243 (35%), Gaps = 24/243 (9%)

Query: 35  QIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSM 91
            +D+D+ + L L           +H  +G   E+       E   I +            
Sbjct: 63  YLDIDKIIALALEKGAD-----AIHPGYGFLSENPAFAKRCEEAGIAFIGPTHAMMEQMG 117

Query: 92  DKMRSKQVVSSCGVPVCPSI----LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147
           DK++SK +     VP  P +      +   ++   +   P ++K   GG   G+ +++ +
Sbjct: 118 DKIQSKIMAKQVDVPTIPGVEKPIETDEQAIEFAKVAGYPIILKAAAGGGGRGMRIVRDE 177

Query: 148 QSI----PLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSY 202
           + +       + +++       + IE+Y++    +   V+GD    V  +          
Sbjct: 178 KQLLKEYHSAVSEATKAFGDGTIFIEKYLEEPKHVEVQVLGDQYGHVVHLFERDCSIQRR 237

Query: 203 ELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
             K          P+  +  +  +E+   A    +++        +FL D      +++E
Sbjct: 238 HQK-----VIEFTPSLFLSEEKRQEICADAIRLAKSVNYCSAGTIEFLIDKHGNH-YFIE 291

Query: 262 INV 264
           +N 
Sbjct: 292 MNP 294


>gi|297568880|ref|YP_003690224.1| carbamoyl-phosphate synthase, large subunit [Desulfurivibrio
           alkaliphilus AHT2]
 gi|296924795|gb|ADH85605.1| carbamoyl-phosphate synthase, large subunit [Desulfurivibrio
           alkaliphilus AHT2]
          Length = 1073

 Score = 77.1 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 48/278 (17%), Positives = 101/278 (36%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G++V  I         D +              V  V+   +PD    
Sbjct: 29  SGTQAVKALKEEGYQVVLINSNPATIMTDPEIADATYIEPITPEFVAKVIERERPDALLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G  G +  ++     +LE   +    + I     +  +   ++ +   G+ V  S++
Sbjct: 89  TLGGQTGLNTAIRVAEMGVLEKYGVELLAARIDVIRKAEGRDSFREAMRKIGLKVPESVI 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           ++       +   I  P +++P       G  +    Q +          +   ++++E+
Sbjct: 149 IHTIAEAKTAAVEIGFPVIVRPSFTLGGTGGGIAYNQQELEDICEHGLDLSINSEVMLEK 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            + G  E    VM D + +V  I   ++ D           +S  V PA+ +    Y+ +
Sbjct: 209 SLLGWKEYELEVMRDKNDNVVIICSIENLDPMGVHT----GDSITVAPAQTLTDREYQLM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P   ++  +E+N 
Sbjct: 265 RDASLAIMREIGVETGGSNVQFAVNPADGELMVIEMNP 302



 Score = 61.3 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 44/287 (15%), Positives = 101/287 (35%), Gaps = 33/287 (11%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ------ 69
           AL + G +   +         D D S  L    L  +   N++     E  +VQ      
Sbjct: 588 ALRELGVESIMVNSNPETVSTDYDTSDRLYFEPLTREDVLNIIEKEKPEGVIVQFGGQTP 647

Query: 70  ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQHL 123
                 L    +P   +   +   + D+ R +Q +    +    + L  +    +     
Sbjct: 648 LNLAVPLAKAGVPIIGTSPDSIDRAEDRERFQQFLQKLNLRQPANGLARQAEEAIKVARD 707

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVM 182
           I  P V++P        + ++  ++ +   +  +   +    +LI++++ D IE+    +
Sbjct: 708 IGYPVVVRPSYVLGGRAMRIVYNERELNNYIATAVDVSPEHPILIDKFLKDAIEVDVDAV 767

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCR 241
            D    +    +   +    E    S +S  V+P   +  ++ +E++  +      +  +
Sbjct: 768 SDGETTIIGGIMQHIE----EAGIHSGDSACVMPPHTLAPEMLEEIKTASKAMAAELKVK 823

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           G+    F        +F LE+N +   T     P ++   G    +L
Sbjct: 824 GLMNVQFAV--KDNTLFVLEVNPRASRT----VPFVSKATGVPLAKL 864


>gi|261855969|ref|YP_003263252.1| acetyl-CoA carboxylase, biotin carboxylase [Halothiobacillus
           neapolitanus c2]
 gi|261836438|gb|ACX96205.1| acetyl-CoA carboxylase, biotin carboxylase [Halothiobacillus
           neapolitanus c2]
          Length = 447

 Score = 77.1 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 34/222 (15%), Positives = 82/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      +E     +         +  DK+ +K+ + +  VP  P    
Sbjct: 77  AIHPGYGFLSENADFAERVEQSGFIFIGPTPENIRMMGDKVTAKETMRAANVPCVPGSDG 136

Query: 114 NRFTMDSQHL-----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGD 164
                  ++L     +  P +IK   GG   G+ V+  + ++   +     ++ +  +  
Sbjct: 137 ALGDDPDENLRLGREVGYPVIIKAAGGGGGRGMRVVHTEAALLHAIEMTRSEAQAAFNNP 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
           Q+ +E++++    +   ++ D   +   +            K          PA  +  +
Sbjct: 197 QVYMEKFLEHPRHVEIQILADTHGNAIYLGERDCSMQRRHQK-----IIEEAPAPGVTPE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              E+  +   A Q +G RG    +FL+   +   +++E+N 
Sbjct: 252 QRAEIGAVCVAACQRMGYRGAGTFEFLY--ENGNFYFIEMNT 291


>gi|213019546|ref|ZP_03335352.1| propionyl-CoA carboxylase, alpha subunit [Wolbachia endosymbiont of
           Culex quinquefasciatus JHB]
 gi|212994968|gb|EEB55610.1| propionyl-CoA carboxylase, alpha subunit [Wolbachia endosymbiont of
           Culex quinquefasciatus JHB]
          Length = 629

 Score = 77.1 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 31/220 (14%), Positives = 75/220 (34%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      LE   I +         ++ +K+ +K+     GV V P  + 
Sbjct: 54  AVHPGYGFLAENPDFPRALEKHNIDFIGPSAETIEVTANKITAKEEARKAGVNVVPGYMG 113

Query: 114 N----RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
                         I  P ++K   GG   G+ ++   + I L       ++        
Sbjct: 114 KIEDAAHAAIVAEEIGFPVMLKAASGGGGKGMRIVYSKKEIELAFTSATNEAEKSFKDGS 173

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+Y++    +   ++ D   ++  +   +        K             I  ++ 
Sbjct: 174 IFIEKYIELPRHIEIQIIADKYGNIVCLGERECSVQRNNQKII----EETPSPFISEEVR 229

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +++        + +        +F+ D  ++  ++LE+N 
Sbjct: 230 QKMYAQCVSLAKQVDYFSAGTVEFVVDK-NQNFYFLEVNT 268


>gi|57866651|ref|YP_188287.1| pyruvate carboxylase [Staphylococcus epidermidis RP62A]
 gi|57637309|gb|AAW54097.1| pyruvate carboxylase [Staphylococcus epidermidis RP62A]
 gi|329734434|gb|EGG70747.1| pyruvate carboxylase [Staphylococcus epidermidis VCU045]
          Length = 1147

 Score = 77.1 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 32/221 (14%), Positives = 77/221 (34%), Gaps = 20/221 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+           I +    +    +  DK++++    +  +PV P    
Sbjct: 80  AIHPGYGFLSENEQFARRCAEEGIKFIGPHLEHLDMFGDKVKARTTAINANLPVIPGTDG 139

Query: 114 NRFTMDSQHLI----SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
              + ++          P +IK   GG   G+ ++++   +     ++ S         +
Sbjct: 140 PIESFEAAEQFANEAGYPLMIKATSGGGGKGMRIVRESSELEDAFHRAKSEAEKSFGNSE 199

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDI 223
           + IE+Y+D    +   V+GD   ++  +           ++        V P   +   +
Sbjct: 200 VYIERYIDNPKHIEVQVIGDEFGNIIHLYE-----RDCSVQRRHQKVVEVAPSVGLSNKL 254

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +   A    + I        +FL      + F++E+N 
Sbjct: 255 RERICDAAIQLMENIKYVNAGTVEFLV--SGDEFFFIEVNP 293


>gi|302697433|ref|XP_003038395.1| hypothetical protein SCHCODRAFT_72682 [Schizophyllum commune H4-8]
 gi|300112092|gb|EFJ03493.1| hypothetical protein SCHCODRAFT_72682 [Schizophyllum commune H4-8]
          Length = 767

 Score = 77.1 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 39/223 (17%), Positives = 79/223 (35%), Gaps = 20/223 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      LE   I +      A      K  SK ++S+  VP  P    
Sbjct: 152 AVHPGYGFLSENAQFAEALENEGIVFIGPPASAIVSMGSKSESKNIMSAASVPCVPGYHG 211

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ---- 165
           +    +        I  P +IK + GG   G+  +    +        S+     +    
Sbjct: 212 DNQDPEFLFQQAQKIGFPVLIKAIHGGGGKGMRTVTIPTAEAFYEALESAKRESQKAFGN 271

Query: 166 --LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPL 221
             +L+E+Y+     +   V  D+  +   +           ++  +       PA  +  
Sbjct: 272 DTVLVERYIQRPRHIEVQVFADSPGNAVSLWE-----RDCSVQRRNQKIIEEAPAPGLSD 326

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +  ++   A  A +A+  RG    +F+FD  +   +++E+N 
Sbjct: 327 RLRADLSEKAVAAAKAVHYRGAGTVEFIFDNDTEDFYFMEMNT 369


>gi|253565447|ref|ZP_04842902.1| phosphoribosylglycinamide formyltransferase 2 [Bacteroides sp.
           3_2_5]
 gi|251945726|gb|EES86133.1| phosphoribosylglycinamide formyltransferase 2 [Bacteroides sp.
           3_2_5]
          Length = 388

 Score = 77.1 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 44/254 (17%), Positives = 85/254 (33%), Gaps = 36/254 (14%)

Query: 32  KVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSM 91
           +V  +     +  ++   +PD+    +     E         L +       ++ SA ++
Sbjct: 46  EVFDMLNGEELERIVKKHRPDIIVPEIEAIRTE--------RLYDFEKEGIQVVPSARAV 97

Query: 92  D-----KMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVI 144
           +     K          G+               ++   I  P V+KPL   S  G  ++
Sbjct: 98  NYTMNRKAIRDLAAKELGLKTAKYYYAKSLEELKEAAEKIGFPCVVKPLMSSSGKGQSLV 157

Query: 145 KKDQSIPLDLLQSSSWNHGD--QLLIEQYVDGIE----LTCGVMGDASLDVTEIA-VPKS 197
           K    +        + + GD  +L+IE+++        LT       +L    I  V K 
Sbjct: 158 KSAAELEHAWEYGCNGSRGDIRELIIEEFIKFDSEITLLTVTQKNGPTLFCPPIGHVQKG 217

Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
             Y               PA I     KE + +A    +A+   G+   +F     +  V
Sbjct: 218 GDY----------RESFQPAHIDPAHLKEAEDMAEKVTRALTGAGLWGVEFFLSHENG-V 266

Query: 258 FWLEINVQP---GM 268
           ++ E++ +P   GM
Sbjct: 267 YFSELSPRPHDTGM 280


>gi|223043834|ref|ZP_03613876.1| pyruvate carboxylase [Staphylococcus capitis SK14]
 gi|222442738|gb|EEE48841.1| pyruvate carboxylase [Staphylococcus capitis SK14]
          Length = 1149

 Score = 77.1 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 34/221 (15%), Positives = 77/221 (34%), Gaps = 20/221 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+           I +    +    +  DK++++       +PV P    
Sbjct: 80  AIHPGYGFLSENEQFARRCAEENIKFIGPHLEHLDMFGDKVKARTTAIKADLPVIPGTDG 139

Query: 112 LVNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
            +  F    Q       P +IK   GG   G+ +++++  +     ++ S         +
Sbjct: 140 PIESFEAAKQFAEEAGFPLMIKATSGGGGKGMRIVREESELEDAFHRAKSEAEKSFGNSE 199

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDI 223
           + IE+Y+D    +   V+GD   ++  +           ++        V P   +   +
Sbjct: 200 VYIERYIDNPKHIEVQVIGDELGNIIHLYE-----RDCSVQRRHQKVVEVAPSVGLSNSL 254

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +   A    + I        +FL      + F++E+N 
Sbjct: 255 RERICEAAIQLMENIKYVNAGTVEFLV--SGDEFFFIEVNP 293


>gi|312891092|ref|ZP_07750615.1| carbamoyl-phosphate synthase, large subunit [Mucilaginibacter
           paludis DSM 18603]
 gi|311296400|gb|EFQ73546.1| carbamoyl-phosphate synthase, large subunit [Mucilaginibacter
           paludis DSM 18603]
          Length = 938

 Score = 77.1 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 47/235 (20%), Positives = 93/235 (39%), Gaps = 14/235 (5%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMR 95
            S+  +L   K D     + G    +  +    + I E   +      + A   + ++  
Sbjct: 72  ESIEKILQEQKIDAVLPTMGGQTALNLCISVAERGIWEKYGVKIIGVDLAAIEKTENREA 131

Query: 96  SKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153
            +Q++   GV V  S + N F    ++   I  P VI+P       G   + K +     
Sbjct: 132 FRQLMVDIGVGVATSKIANSFLEGKEAAQQIGFPLVIRPSYTLGGKGAGFVHKKEEFDAA 191

Query: 154 LLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNS 211
           L +    +   ++L+EQ V G  E    ++ D + +V  I   ++    ++       +S
Sbjct: 192 LSRGLQASPTHEVLVEQAVLGWKEFELELLRDGNDNVIIICSIEN----FDPMGIHTGDS 247

Query: 212 THVLPAK-IPLDIYKEVQRLAFLAHQAIG-CRGISRSDFLFDPLSRKVFWLEINV 264
             V PA  +    Y++++  A    +AIG   G     F  +P++ ++  +EIN 
Sbjct: 248 ITVAPAMTLSDRCYQDMRNQAIKMMRAIGNFAGGCNVQFSVNPVNDEIIAIEINP 302



 Score = 65.9 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 26/218 (11%), Positives = 78/218 (35%), Gaps = 14/218 (6%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           L    I    +      ++ D+ R   ++    +P     +       ++  H +  P +
Sbjct: 651 LHEHGIKIIGTSYDNMDIAEDRGRFSDMLKDLDIPYPKYGVAENAEEAIEVAHHVGYPVL 710

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD--GIELTCGVMGDASL 187
           ++P       G+ ++  D+ +   ++       G+++LI+ ++D      +  +     +
Sbjct: 711 VRPSYVLGGQGMSIVINDEDLETAVVNLLKNLPGNRVLIDHFLDRAEEAESDSISDGEDV 770

Query: 188 DVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
            +  +         +    S  ++  + P  +  ++ ++++       +A+  RG+    
Sbjct: 771 HIIGMMEHIEPAGIH----SGDSNAVLPPFNLSENVTRQMEEHTVKIAKALNVRGLLNIQ 826

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285
           F     +  V+ +E N +   T     P +A      +
Sbjct: 827 FAI--KNEMVYVIEANPRASRT----VPFIAKAYDVPY 858


>gi|298373329|ref|ZP_06983318.1| carbamoyl-phosphate synthase, large subunit [Bacteroidetes oral
           taxon 274 str. F0058]
 gi|298274381|gb|EFI15933.1| carbamoyl-phosphate synthase, large subunit [Bacteroidetes oral
           taxon 274 str. F0058]
          Length = 1065

 Score = 77.1 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 51/269 (18%), Positives = 103/269 (38%), Gaps = 32/269 (11%)

Query: 25  ALEDAGFKVSQ---------IDVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL++ G++V            D                V  ++   +PD     L G  G
Sbjct: 35  ALKEEGYEVILANSNPATIMTDTHIADKVYMEPLTLEYVAKIIRFERPDAIVPGLGGQTG 94

Query: 64  EDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT-- 117
            +  VQ     ILE  ++    +   +  ++ D+   K++  S G PV PS + N     
Sbjct: 95  LNLAVQLAKKGILEECDVEILGTSFQSIEMAEDRELFKELCKSLGEPVLPSKIANSMEEG 154

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IE 176
           + +   I  P V++P       G    + +      +  + + +   Q+L+E+ + G  E
Sbjct: 155 LAAAAEIGYPVVLRPAFTLGGTGGGFAEDEAEFCELMRNALALSPVHQVLVEKSIKGFKE 214

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAH 235
           +   V+ D +     I   ++      +   + +S  V P++ +    ++ ++  A    
Sbjct: 215 IEYEVIRDKNDTAIAICNMEN---IDPVGVHTGDSMVVCPSQTLTNKEFQLLRDSALKII 271

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +A+   G     F  DPLS   + +E+N 
Sbjct: 272 RALKIEGGCNVQFALDPLSFNYYLIEVNP 300



 Score = 74.8 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 43/272 (15%), Positives = 100/272 (36%), Gaps = 23/272 (8%)

Query: 27  EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           +   F+   ++    V  ++   KPD     L G    +  +   L  L +    + + A
Sbjct: 607 DKLYFEPLTVE---DVMNIIDLEKPDGVIVTLGGQTAIN--LAEPLHKLGVKIIGTDVEA 661

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYVIKPLKGGSSLGIIVI 144
              + ++   ++V+++ G+P    + V            I  P +++P        + ++
Sbjct: 662 IDRAENRDSFEKVMNTLGIPQPKGLAVTNIPDGCRVAQDIGYPVLVRPSFVLGGRAMKIV 721

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS---LDVTEIAVPKSDFYS 201
             ++S+   L  +   N    +L+++Y+ G EL    + D     +      V ++  +S
Sbjct: 722 NNEESLKKYLQTAVEINVNQPVLVDKYISGKELEVDAICDGRDVFIPGIMEHVERTGIHS 781

Query: 202 YELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260
                   +S  V P   +   +  ++   +      IG  G+    F+ D     VF +
Sbjct: 782 -------GDSISVYPTFSVSQKVKDKIIDYSVRLGLEIGIIGLFNIQFIADTNDD-VFVI 833

Query: 261 EINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           E+N +   T     P ++   G    ++   +
Sbjct: 834 EVNPRSSRT----VPFLSKATGVDMADIATRV 861


>gi|294055599|ref|YP_003549257.1| urea carboxylase [Coraliomargarita akajimensis DSM 45221]
 gi|293614932|gb|ADE55087.1| urea carboxylase [Coraliomargarita akajimensis DSM 45221]
          Length = 1208

 Score = 77.1 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 29/180 (16%), Positives = 65/180 (36%), Gaps = 12/180 (6%)

Query: 93  KMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---ISPPYVIKPLKGGSSLGIIVIKKDQS 149
           K  ++++     VP+ P   +     +++     I  P ++K   GG  +G+ +   +  
Sbjct: 125 KHEARRLADENTVPLLPGSELLSDLEEAKAKAIDIGYPVMLKSTAGGGGIGMQICVDEAE 184

Query: 150 IPLDLLQSSSWNHG----DQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYEL 204
           +          +        + +E++V     L   + GD +  V  + V          
Sbjct: 185 LIEAYASVERLSQSHFGQGGIFLEKFVVHARHLEVQIFGDGAGQVVSLGVRDCSAQRRNQ 244

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K          P  +  ++   +Q  A     A+  R     +F++D  S + ++LE+N 
Sbjct: 245 K----VIEETPPVNVSDEVISGIQEAALRLATAVKYRSAGTVEFIYDNDSHEYYFLEVNT 300


>gi|254294401|ref|YP_003060424.1| carbamoyl-phosphate synthase L chain ATP-binding [Hirschia baltica
           ATCC 49814]
 gi|254042932|gb|ACT59727.1| Carbamoyl-phosphate synthase L chain ATP-binding [Hirschia baltica
           ATCC 49814]
          Length = 666

 Score = 77.1 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 73/220 (33%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  FG   E+      LE  +I +     +A     DK+ SK+  +  GV   P  + 
Sbjct: 77  AVHPGFGFLSENAEFARRLEKEKITFIGPNPIAIEAMGDKITSKKFAAEAGVSTVPGHMG 136

Query: 114 NRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
                +        +  P +IK   GG   G+ +   D         S +        D+
Sbjct: 137 LIEDAEEAVKISQKVGYPVMIKASAGGGGKGMRIAWNDDEAREGFRDSKAEAKGSFGDDR 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+++ +   +   V+GD       +   +        K             I     
Sbjct: 197 IFIEKFITEPRHIEIQVLGDKHGHCIHLNERECSIQRRNQK----VVEEAPSPFIDAKTR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             + + +    +A+        +F+ D   +  ++LE+N 
Sbjct: 253 AAMGKQSIALAKAVNYDSAGTVEFIVDK-DKNFYFLEMNT 291


>gi|254429770|ref|ZP_05043477.1| Carbamoyl-phosphate synthase L chain, ATP binding domain protein
           [Alcanivorax sp. DG881]
 gi|196195939|gb|EDX90898.1| Carbamoyl-phosphate synthase L chain, ATP binding domain protein
           [Alcanivorax sp. DG881]
          Length = 656

 Score = 77.1 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 68/220 (30%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       +   I +      A  L   K  SK  +   GVP  P    
Sbjct: 78  AVHPGYGFLSENAAFSKACKEAGIIFIGPDEDAIQLMGSKRLSKIAMQDAGVPCIPGYQG 137

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS-----SWNHGD 164
              + +        I  P +IK   GG   G+ V+     I   L  +      ++   +
Sbjct: 138 EEQSDERLQQEAERIGLPLMIKASAGGGGRGMRVVTDAGDISAQLKSARQEAKNAFGSDE 197

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
            +L    +    +   V GD   +V  +            K             +   + 
Sbjct: 198 LILERAVLQPRHVEIQVFGDRHGNVIHLGERDCSVQRRHQK----VVEEAPSPAVDEPLR 253

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +   A  A +A    G    +FL  P     F+LE+N 
Sbjct: 254 QRMGEAAVQAARACQYVGAGTVEFLLAP-EGDFFFLEMNT 292


>gi|15669679|ref|NP_248492.1| phosphoribosylglycinamide formyltransferase 2 [Methanocaldococcus
           jannaschii DSM 2661]
 gi|1592123|gb|AAB99496.1| phosphoribosylglycinamide formyltransferase 2 (purT)
           [Methanocaldococcus jannaschii DSM 2661]
          Length = 393

 Score = 77.1 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 36/249 (14%), Positives = 98/249 (39%), Gaps = 24/249 (9%)

Query: 31  FKVSQIDVDR--SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTH-SGILAS 87
            K   ID+    ++  ++   +PD     +           A+++  ++ YT      A+
Sbjct: 57  HKSYVIDMKDYDALMAIIEREEPDYIVPEIEAIN-----TDALIDAEKMGYTVIPTAEAT 111

Query: 88  ALSMDKMRSKQVVSS-CGVPVCPSILVNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVI 144
            ++M++   +++ +   G+        +      D+   +  P V+KP+   S  G  V+
Sbjct: 112 KITMNRELIRRLAAEKLGLKTAKYEFADSLEELRDAVEKLGLPCVVKPIMSSSGKGQSVV 171

Query: 145 KKDQSIPLD--LLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSY 202
           + ++ I     + +  +   G+++++E++++  +    ++   + + T+   P       
Sbjct: 172 RSEEDIEKAWKIAKEGARGIGNRVIVEEFIN-FDYEITLLTARTAEGTKFCEPIGHVQI- 229

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
                        P  +  ++ ++ Q +A     A+G  GI   +        +V + E+
Sbjct: 230 ----DGDYHESWQPHNMSAELKEQAQDIAKKVTDALGGYGIFGVELFV--KGDEVIFSEV 283

Query: 263 NVQP---GM 268
           + +P   GM
Sbjct: 284 SPRPHDTGM 292


>gi|330941793|gb|EGH44542.1| 3-methylcrotonyl-CoA carboxylase alpha subunit [Pseudomonas
           syringae pv. pisi str. 1704B]
          Length = 516

 Score = 77.1 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 79/221 (35%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      +E   + +      A      K  +K ++   GVP+ P    
Sbjct: 81  AIHPGYGFLSENADFARAIENAGLIFLGPPASAIDAMGSKSAAKALMEQAGVPLVPGYHG 140

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKK----DQSIPLDLLQSSSWNHGDQ 165
               ++    +   I  P ++K   GG   G+ V++      +S+     ++ S     +
Sbjct: 141 EAQDIETFRAAAERIGYPVLLKATAGGGGKGMKVVEHIGELAESLASAQREALSSFGDAR 200

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           +L+E+YV     +   V  D       +            K          PA  +   +
Sbjct: 201 MLVEKYVLTPRHVEIQVFADRHGHCLYLNERDCSIQRRHQK-----VVEEAPAPGLTTSL 255

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            K +   A  A QAIG  G    +FL D    + F++E+N 
Sbjct: 256 RKAMGEAAVKAAQAIGYVGAGTVEFLLDAR-GEFFFMEMNT 295


>gi|331266961|ref|YP_004326591.1| acetyl-CoA carboxylase biotin carboxylase subunit [Streptococcus
           oralis Uo5]
 gi|326683633|emb|CBZ01251.1| acetyl-CoA carboxylase biotin carboxylase subunit [Streptococcus
           oralis Uo5]
          Length = 455

 Score = 77.1 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 75/220 (34%), Gaps = 16/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  FG   E+     + + + I +            DK+ +++ +   GVPV P    
Sbjct: 77  AIHPGFGFLSENSKFATMCDEVGIKFIGPSGAVMDTMGDKINAREQMIKAGVPVIPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
            +      +     I  P ++K   GG   GI  ++K + +      +SS          
Sbjct: 137 EVHTAEEALAVAEKIGYPVMLKASAGGGGKGIRKVEKAEDLVAAFETASSEAKANFGNGA 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+ +     +   ++ D    V  +            K             I   + 
Sbjct: 197 MYLERVIYPARHIEVQILADQEGHVIHLGERDCSLQRNNQKVL----EESPSIAIGKTLR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            E+   A  A +++G       +FL D  S   +++E+N 
Sbjct: 253 HEIGAAAVRAAESVGYENAGTIEFLLDEASGNFYFMEMNT 292


>gi|172045945|sp|Q58881|PURT_METJA RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
          Length = 389

 Score = 77.1 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 36/249 (14%), Positives = 98/249 (39%), Gaps = 24/249 (9%)

Query: 31  FKVSQIDVDR--SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTH-SGILAS 87
            K   ID+    ++  ++   +PD     +           A+++  ++ YT      A+
Sbjct: 53  HKSYVIDMKDYDALMAIIEREEPDYIVPEIEAIN-----TDALIDAEKMGYTVIPTAEAT 107

Query: 88  ALSMDKMRSKQVVSS-CGVPVCPSILVNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVI 144
            ++M++   +++ +   G+        +      D+   +  P V+KP+   S  G  V+
Sbjct: 108 KITMNRELIRRLAAEKLGLKTAKYEFADSLEELRDAVEKLGLPCVVKPIMSSSGKGQSVV 167

Query: 145 KKDQSIPLD--LLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSY 202
           + ++ I     + +  +   G+++++E++++  +    ++   + + T+   P       
Sbjct: 168 RSEEDIEKAWKIAKEGARGIGNRVIVEEFIN-FDYEITLLTARTAEGTKFCEPIGHVQI- 225

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
                        P  +  ++ ++ Q +A     A+G  GI   +        +V + E+
Sbjct: 226 ----DGDYHESWQPHNMSAELKEQAQDIAKKVTDALGGYGIFGVELFV--KGDEVIFSEV 279

Query: 263 NVQP---GM 268
           + +P   GM
Sbjct: 280 SPRPHDTGM 288


>gi|71892073|ref|YP_277803.1| acetyl CoA carboxylase, biotin carboxylase subunit [Candidatus
           Blochmannia pennsylvanicus str. BPEN]
 gi|71796179|gb|AAZ40930.1| acetyl CoA carboxylase, biotin carboxylase subunit [Candidatus
           Blochmannia pennsylvanicus str. BPEN]
          Length = 451

 Score = 77.1 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 37/225 (16%), Positives = 79/225 (35%), Gaps = 25/225 (11%)

Query: 58  LHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI--- 111
           +H  +G   E+      +E     +         L  +K+ +  ++   G+   P     
Sbjct: 78  IHPGYGFLSENADFAEQVERSGFVFIGPRSETIRLMGNKISAIAIMKESGIMTVPGWDYK 137

Query: 112 ------LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWN 161
                             I+ P +IK   GG   G+ V+KK+  +   +     ++ +  
Sbjct: 138 LNKNINNKIYNFSCQNLHINYPIIIKSAHGGGGRGMCVVKKESDLQDAIRMIRAEAKNTF 197

Query: 162 HGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KI 219
           + D +  EQY+     +   V+ D   ++  +           ++          PA  I
Sbjct: 198 NDDTIYAEQYLAHPRHIEIQVLSDGKGNIIYLTE-----RDCSVQRKHQKIVEESPALGI 252

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              ++K +          IG RG+   +FL+   + + F++E+N 
Sbjct: 253 SSAMWKHIGESCVKICYKIGYRGVGTFEFLY--ENNEFFFIEMNT 295


>gi|16126072|ref|NP_420636.1| urea amidolyase-like protein [Caulobacter crescentus CB15]
 gi|221234842|ref|YP_002517278.1| urea carboxylase [Caulobacter crescentus NA1000]
 gi|13423266|gb|AAK23804.1| urea amidolyase-related protein [Caulobacter crescentus CB15]
 gi|220964014|gb|ACL95370.1| urea carboxylase [Caulobacter crescentus NA1000]
          Length = 1207

 Score = 77.1 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 37/219 (16%), Positives = 71/219 (32%), Gaps = 17/219 (7%)

Query: 58  LHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS---I 111
           +H  +G   E        E   + +             K  ++ +  + GVP+ P    +
Sbjct: 78  IHPGYGFLSESAAFAQACEDAGVTFIGPSADNIRAFGLKHTARDLAQAHGVPLAPGTDLL 137

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQLL 167
                 + +   I  P ++K   GG  +G+ V +  +++                   + 
Sbjct: 138 TDPAAALAAAQRIGFPVILKATAGGGGIGMRVCESAEAVEEAFAAVRRLATGNFSDGGVF 197

Query: 168 IEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYK 225
           +E+YV     +   V GD +       V         L+  +       PA  +P     
Sbjct: 198 LERYVHKARHIEVQVFGDGAG-----RVAALGERDCSLQRRNQKVVEETPAPGLPAATRT 252

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +   A    +A   R     +FL+D      F+LE+N 
Sbjct: 253 ALLDAAVRLAKAANYRSAGTVEFLYDADRDDFFFLEVNT 291


>gi|262378980|ref|ZP_06072137.1| acetyl-CoA carboxylase, biotin carboxylase [Acinetobacter
           radioresistens SH164]
 gi|262300265|gb|EEY88177.1| acetyl-CoA carboxylase, biotin carboxylase [Acinetobacter
           radioresistens SH164]
          Length = 663

 Score = 77.1 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 78/221 (35%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       +   I +    + A      K  SK ++   GVP+ P    
Sbjct: 77  AVHPGYGFLSENDDFALACQQNGIEFIGPPVEAIRAMGLKATSKALMEKAGVPLTPGYHG 136

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGDQ 165
                D        I  P +IK   GG   G+ ++++ +     L     ++ S    + 
Sbjct: 137 KNQEPDFLKQQADAIGYPVLIKASAGGGGKGMRLVERSEDFLSSLTSCKSEARSSFGNED 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDI 223
           +LIE+YV     +   V GD   +               ++          PA +   + 
Sbjct: 197 VLIERYVTRPRHIEVQVFGDKHGNYV-----HLFERDCSVQRRHQKVLEEAPAPLMSEEK 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +++ A  A +A+   G    +F+        +++E+N 
Sbjct: 252 LEAMRQAAIDAARAVNYVGAGTVEFIV-EQDGTAYFMEMNT 291


>gi|237784907|ref|YP_002905612.1| pyruvate carboxylase [Corynebacterium kroppenstedtii DSM 44385]
 gi|237757819|gb|ACR17069.1| pyruvate carboxylase [Corynebacterium kroppenstedtii DSM 44385]
          Length = 1133

 Score = 77.1 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 33/248 (13%), Positives = 73/248 (29%), Gaps = 18/248 (7%)

Query: 28  DAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87
           + G  V        +  V      +  +   +G   E+  +    E   I +        
Sbjct: 57  EEGHPVKAYLNVDEIISVAKDSGAEAIYPG-YGFLSENPELARACEREGIAFVGPTADVL 115

Query: 88  ALSMDKMRSKQVVSSCGVPVCPSILVNRF-----TMDSQHLISPPYVIKPLKGGSSLGII 142
            ++ +K  +       G+P                +  +  +  P  +K + GG   G+ 
Sbjct: 116 DMTGNKATAIHNAKEAGLPTLGDTPATDDLNELERLADESDMPYPLFVKAVAGGGGRGMR 175

Query: 143 VIKKDQSIP-----LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKS 197
           +I     +            +++      L +  V+   +   ++ D   +V        
Sbjct: 176 LIPSRDKLRELCETASNEAKTAFGDPTVFLEQAVVNPKHIEVQILADGQGNVV-----HL 230

Query: 198 DFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256
                 ++        + PA  +  +  + +   A    + I  RG    +FL D     
Sbjct: 231 FERDCSVQRRHQKVVELAPAPSLTPEQREAICTDAVNFARHINYRGAGTVEFLVDEDGNH 290

Query: 257 VFWLEINV 264
           VF  E+N 
Sbjct: 291 VFI-EMNP 297


>gi|189425138|ref|YP_001952315.1| carbamoyl-phosphate synthase, large subunit [Geobacter lovleyi SZ]
 gi|189421397|gb|ACD95795.1| carbamoyl-phosphate synthase, large subunit [Geobacter lovleyi SZ]
          Length = 1082

 Score = 77.1 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 53/278 (19%), Positives = 104/278 (37%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVDRS------------VGLVLAHLKPDLAFN 56
           SG     AL++ G++V  +         D D +            +  ++   +PD    
Sbjct: 29  SGTQACKALKEEGYEVVLLNSNPATIMTDPDFADRTYVEPVTPEILAKIIEKERPDAVLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G    +  V      IL+   +    + + A   + D+   KQ +   G+ V  S L
Sbjct: 89  TLGGQTALNTAVSVAEMGILDKFGVELIGAKLPAIKKAEDRTLFKQAMEKIGLSVPKSGL 148

Query: 113 VNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +  T  M+    +  P +I+P       G  +    +      +     +  D++L+E+
Sbjct: 149 AHNRTEVMEVIKQVGFPAIIRPSFTLGGTGGGIAYNMEEYERMAMVGIDASPTDEILVEE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            V G  E    VM D + +V  I   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SVIGWKEYELEVMRDTADNVVIICSIEN----FDPMGVHTGDSITVAPAQTLTDKEYQIL 264

Query: 228 QRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P   ++  +E+N 
Sbjct: 265 RDASLKIIREIGVDTGGSNIQFGINPRDGRLVVIEMNP 302



 Score = 57.4 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/196 (13%), Positives = 75/196 (38%), Gaps = 8/196 (4%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYV 129
           LE   +P   +   A   + D+ R ++++    +    +     F    +  + I  P V
Sbjct: 660 LEKAGVPIIGTSPDAIDRAEDRERFQEMLHKLDLLQPANGTARSFEEAEEVANRIGYPVV 719

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLD 188
           ++P        + ++   +++   +  +   +    +L+++++D  IE+    + D    
Sbjct: 720 VRPSYVLGGRAMEIVYDVENLRRYMTTAVQASPEHPILVDKFLDAAIEIDVDALCDGKQV 779

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           V    +   +       +S  ++  + P  +  ++  EV+R   +   A+    I   + 
Sbjct: 780 VIGGIMEHIEEAGI---HSGDSACSLPPYSLSQELIAEVRRQTEIM--ALELNVIGLMNV 834

Query: 249 LFDPLSRKVFWLEINV 264
            +      ++ LE+N 
Sbjct: 835 QYAVKDGTIYILEVNP 850


>gi|46199064|ref|YP_004731.1| biotin carboxylase [Thermus thermophilus HB27]
 gi|55981092|ref|YP_144389.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Thermus
           thermophilus HB8]
 gi|46196688|gb|AAS81104.1| biotin carboxylase [Thermus thermophilus HB27]
 gi|55772505|dbj|BAD70946.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Thermus
           thermophilus HB8]
          Length = 445

 Score = 77.1 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 34/219 (15%), Positives = 76/219 (34%), Gaps = 18/219 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     +     I +            DK  +++V    GVP  P    
Sbjct: 76  AIHPGYGFLAENATFAEMCREHGITFIGPTPENMKALGDKATARKVAREAGVPTVPGTDE 135

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQL 166
           +        +   I  P ++K   GG   G+ V+  ++ +   +L    ++ +      +
Sbjct: 136 LSSVEEAKRAAQEIGYPVILKASAGGGGRGMRVVHTEEELERAVLQAQEEARAAFGNPAV 195

Query: 167 LIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
            +E+Y++    +   V+GD         V         ++          P+ +P +  +
Sbjct: 196 YLEKYIEEPKHIEIQVLGDGE------RVVHLWERDCSIQRRHQKLLEEAPSLLPEETRR 249

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +   A    + +G       +FL D      +++E+N 
Sbjct: 250 AIAEAARRLAERVGYVSAGTMEFLVDKEGN-FYFIEMNT 287


>gi|268557162|ref|XP_002636570.1| C. briggsae CBR-PYC-1 protein [Caenorhabditis briggsae]
          Length = 1174

 Score = 77.1 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 39/235 (16%), Positives = 86/235 (36%), Gaps = 21/235 (8%)

Query: 42  VGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQ 98
             ++   LK D+  + +H  +G   E     A  +   I +        A   DK+ ++Q
Sbjct: 95  DQIIETALKHDI--DAIHPGYGFLSERSDFAAACQNAGIVFIGPSPDVMARMGDKVAARQ 152

Query: 99  VVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154
                GV V P     I      ++       P ++K   GG   GI  + K + +    
Sbjct: 153 AAIEAGVQVVPGTPGPITTADEAVEFAKQYGTPIILKAAYGGGGRGIRRVDKLEEVEEAF 212

Query: 155 L----QSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209
                ++ +      L +E++V+    +   ++GD   ++  +           ++    
Sbjct: 213 RRSFSEAQAAFGDGSLFVEKFVERPRHIEVQLLGDHHGNIVHLYE-----RDCSVQRRHQ 267

Query: 210 NSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
               + PA  +P  + +++   A    + +G +     +FL D      +++E+N
Sbjct: 268 KVVEIAPAPALPEGVREKILADALRLAKHVGYQNAGTVEFLVDQKGN-YYFIEVN 321


>gi|254281608|ref|ZP_04956576.1| pyruvate carboxylase [gamma proteobacterium NOR51-B]
 gi|219677811|gb|EED34160.1| pyruvate carboxylase [gamma proteobacterium NOR51-B]
          Length = 1148

 Score = 76.7 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 34/221 (15%), Positives = 72/221 (32%), Gaps = 18/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            LH  +G   E+  +        I +            DK  ++ +     VPV P+  +
Sbjct: 80  ALHPGYGLLSENPDLVDACRENGIAFIGPTAETMRALGDKASARAIAIEANVPVIPATDL 139

Query: 114 NRFTM----DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ----SSSWNHGDQ 165
              ++    +    I  P ++K   GG   G+  I     +   + +    + +      
Sbjct: 140 IEESLSGIAEQAAEIGYPLMLKASWGGGGRGMRPIAGPDELEEKIREGRREAEAAFGNGA 199

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
             +E+ ++    +   ++GD    +  +            K          PA  +  + 
Sbjct: 200 GYLEKMIERARHVEVQILGDQHGAIYHLWERDCSIQRRNQK-----VVERAPAPYLSDEQ 254

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             EV  L       +G       +FL D  + K +++E+N 
Sbjct: 255 RTEVCELGRRIAAHVGYECAGTVEFLMDMDTEKFYFIEVNP 295


>gi|78486133|ref|YP_392058.1| allophanate hydrolase subunit 2 [Thiomicrospira crunogena XCL-2]
 gi|78364419|gb|ABB42384.1| urea amidolyase [Thiomicrospira crunogena XCL-2]
          Length = 1206

 Score = 76.7 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 39/256 (15%), Positives = 90/256 (35%), Gaps = 32/256 (12%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-SIL 112
            +H  +G   E+       E + I +             K  ++++     VP+ P S L
Sbjct: 77  AIHPGYGFLSENDGFAETCESMGIKFIGPAPDHIRDFGLKHTARELAIKANVPLLPGSDL 136

Query: 113 VNRFTMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD----QL 166
           ++   +  Q    I  P ++K   GG  +G+       ++     Q +  +        +
Sbjct: 137 LSSLDVAQQEADRIGFPVMLKSTAGGGGIGMQRCDTPDNLSEAFEQVARLSQNSFGQSGI 196

Query: 167 LIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIY 224
            +E++V +   +   + GD    V              L+  +       PA  I  +  
Sbjct: 197 FLEKFVVNARHIEIQIFGDGLGKVV-----SFGERDCSLQRRNQKVVEETPAVGISREQV 251

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
            E++  A    + +  +     ++++D  + + ++LE+N             +    G +
Sbjct: 252 AEMEAHAVRLGELVNYQSAGTVEYVYDADTNQYYFLEVNT-----------RLQVEHGIT 300

Query: 285 FR----ELLLWMVEDA 296
                 +L+ WM++ A
Sbjct: 301 EAVRDVDLVQWMIQVA 316


>gi|309354971|emb|CAP39739.2| CBR-PYC-1 protein [Caenorhabditis briggsae AF16]
          Length = 1166

 Score = 76.7 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 39/235 (16%), Positives = 86/235 (36%), Gaps = 21/235 (8%)

Query: 42  VGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQ 98
             ++   LK D+  + +H  +G   E     A  +   I +        A   DK+ ++Q
Sbjct: 95  DQIIETALKHDI--DAIHPGYGFLSERSDFAAACQNAGIVFIGPSPDVMARMGDKVAARQ 152

Query: 99  VVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154
                GV V P     I      ++       P ++K   GG   GI  + K + +    
Sbjct: 153 AAIEAGVQVVPGTPGPITTADEAVEFAKQYGTPIILKAAYGGGGRGIRRVDKLEEVEEAF 212

Query: 155 L----QSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209
                ++ +      L +E++V+    +   ++GD   ++  +           ++    
Sbjct: 213 RRSFSEAQAAFGDGSLFVEKFVERPRHIEVQLLGDHHGNIVHLYE-----RDCSVQRRHQ 267

Query: 210 NSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
               + PA  +P  + +++   A    + +G +     +FL D      +++E+N
Sbjct: 268 KVVEIAPAPALPEGVREKILADALRLAKHVGYQNAGTVEFLVDQKGN-YYFIEVN 321


>gi|170084555|ref|XP_001873501.1| 3-methylcrotonyl-CoA carboxylase [Laccaria bicolor S238N-H82]
 gi|164651053|gb|EDR15293.1| 3-methylcrotonyl-CoA carboxylase [Laccaria bicolor S238N-H82]
          Length = 683

 Score = 76.7 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 41/223 (18%), Positives = 84/223 (37%), Gaps = 20/223 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      L    I +      A      K  SK ++SS GVP  P    
Sbjct: 83  AVHPGYGFLSENATFSERLAEAGIVFIGPPASAIVSMGSKSESKNIMSSAGVPCVPGYHG 142

Query: 114 NRFTM----DSQHLISPPYVIKPLKGGSSLGIIVIKK------DQSIPLDLLQSSSWNHG 163
                    +    I  P +IK + GG   G+  +        ++++     +S      
Sbjct: 143 ENQDATFLFEQAQQIGFPVLIKAIHGGGGKGMRAVTTPTVSAFNEALLSAQRESLKAFGN 202

Query: 164 DQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPL 221
           D +L+E+Y++    +   V  D+   V  +           ++  +       PA  +  
Sbjct: 203 DTVLVEKYIERPRHVEVQVFADSLGGVVSLWE-----RDCSVQRRNQKIIEEAPAPGLSP 257

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           ++  ++   A  A +A+   G    +F+FD  +++ +++E+N 
Sbjct: 258 ELRADLSAKAIAAARAVNYVGAGTVEFIFDNDTQRFYFMEMNT 300


>gi|78357124|ref|YP_388573.1| pyruvate carboxylase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78219529|gb|ABB38878.1| pyruvate carboxylase, putative [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 1238

 Score = 76.7 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 47/262 (17%), Positives = 97/262 (37%), Gaps = 28/262 (10%)

Query: 19  GKACASALEDAGFKVS-QIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILEL 74
             + A  L   G      +D+DR   + LA  +       +H  +G   ED    +    
Sbjct: 55  AASAAQELLLLGSDPRAYLDIDR--IIRLAKQR---GIIAIHPGWGFSSEDPRFPSRCAE 109

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVI 130
             + Y  S   A  L  +K++ +++    G+PV P     + V      ++  I  P ++
Sbjct: 110 AGLLYIGSTAEAMNLLGNKVQVRRLAKQLGIPVVPGSEGAVDVPTGRKIAEE-IGFPVML 168

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQLLIEQYVDG-IELTCGVMGDA 185
           K   GG   GI +IK    +    +++S+         +L +E+Y+     +   V+ D 
Sbjct: 169 KAEGGGGGRGIFLIKSQDELEDAFVKASTMAQASFGNPRLYVEKYLPSVRHIEIQVIADM 228

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK---IPLDIYKEVQRLAFLAHQAIGCRG 242
             +V        D     ++ +      + P+    I  ++   ++  +    Q +G   
Sbjct: 229 HGNVFAF-----DERDCTVQRNHQKLIEITPSPWKGITPELRARLKDYSRQLVQEVGYYS 283

Query: 243 ISRSDFLFDPLSRKVFWLEINV 264
           +   +FL        + +E+N 
Sbjct: 284 LCTVEFLVT-DDGTPYLIEVNT 304


>gi|147832389|emb|CAN77783.1| hypothetical protein VITISV_037213 [Vitis vinifera]
          Length = 235

 Score = 76.7 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 28/117 (23%), Positives = 50/117 (42%), Gaps = 24/117 (20%)

Query: 54  AFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV---VSSCGVPVCPS 110
            F  +HG  GEDG +Q +LE   +PYT  G+  S + MDK+ +      +   GV     
Sbjct: 95  VFIAVHGGMGEDGTLQFLLEAGGVPYTGPGVETSKICMDKVATSLALNHLEKFGV----- 149

Query: 111 ILVNRFTMDSQHLISPPY----------------VIKPLKGGSSLGIIVIKKDQSIP 151
           + +N+  +  + L++ P                  +KP + G S G+  +   + + 
Sbjct: 150 LTINKKVLRKEDLLNAPVHDIWHDLTSKLQSETLCVKPARDGCSTGVARLCCLEDLA 206


>gi|119962530|ref|YP_947447.1| pyruvate carboxylase [Arthrobacter aurescens TC1]
 gi|119949389|gb|ABM08300.1| pyruvate carboxylase [Arthrobacter aurescens TC1]
          Length = 1131

 Score = 76.7 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 39/249 (15%), Positives = 84/249 (33%), Gaps = 18/249 (7%)

Query: 28  DAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87
           + G  V        V  V      D  +   +G   E+  +    +   I +        
Sbjct: 53  EVGHPVRAYLDVEEVVRVAKEAGADAIYPG-YGFLSENPDLARAAKAAGITFVGPPAEVL 111

Query: 88  ALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD---SQHLISPPYVIKPLKGGSSLGIIVI 144
            L+ +K+ + +     GVPV  S   ++   +   +   I  P   K + GG   G+  +
Sbjct: 112 ELAGNKVAALEAARKAGVPVLKSSKPSKDLDELIAAADEIGFPIFAKAVAGGGGRGMRRV 171

Query: 145 KKDQSIPLDL-----LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDF 199
           +  +++P  L        +++      L +  +    +   ++ DA  +V          
Sbjct: 172 ETREALPEALQSAMREADAAFGDPTMFLEQAVLRPRHIEVQILADAEGNVM-----HLFE 226

Query: 200 YSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS---R 255
               L+        + PA  +  +I + + R A    +A+        +FL D       
Sbjct: 227 RDCSLQRRHQKVVEIAPAPNLDENIRQALYRDAVAFAKALNYVNAGTVEFLVDTEGERAG 286

Query: 256 KVFWLEINV 264
           +  ++E+N 
Sbjct: 287 QHVFIEMNP 295


>gi|302548807|ref|ZP_07301149.1| biotin carboxylase [Streptomyces viridochromogenes DSM 40736]
 gi|302466425|gb|EFL29518.1| biotin carboxylase [Streptomyces viridochromogenes DSM 40736]
          Length = 1089

 Score = 76.7 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 32/224 (14%), Positives = 75/224 (33%), Gaps = 21/224 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+           + +            DK  ++++ +  GVPV P+   
Sbjct: 79  AVHPGYGLLAENADFAQRCTDAGLTWVGPRPEVLRTLGDKTTARELATRLGVPVLPATYG 138

Query: 114 NRFTMDSQHLI-----SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGD 164
           +    +++  +         ++K + GG   G+  + +   +   +     ++S      
Sbjct: 139 DTGAEEARAFMAGLGEGAAVMVKAIAGGGGRGMRTVYEAGQLEEAVRRCRSEASHAFGDG 198

Query: 165 QLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +EQ +     +   V+GD +  V            +  K        + PA  +   
Sbjct: 199 AVYVEQLLRRARHVEVQVLGDGTGAVVGYGDRDCSLQRHRQK-----IVEIAPAPGLDEA 253

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR--KVFWLEINV 264
           +   +   A    + +   G+   +FL D        ++LE N 
Sbjct: 254 VRAGLHDAALRMAREVAYTGLGTFEFLVDTGDGSPGFYFLEANP 297


>gi|153806533|ref|ZP_01959201.1| hypothetical protein BACCAC_00797 [Bacteroides caccae ATCC 43185]
 gi|149131210|gb|EDM22416.1| hypothetical protein BACCAC_00797 [Bacteroides caccae ATCC 43185]
          Length = 388

 Score = 76.7 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 45/254 (17%), Positives = 84/254 (33%), Gaps = 36/254 (14%)

Query: 32  KVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSM 91
           +V  +     +  ++   +PD+    +     E         L +       ++ SA ++
Sbjct: 46  EVFDMLNGEELERIVKKHQPDIIVPEIEAIRTE--------RLYDFEKEGIQVVPSARAV 97

Query: 92  D-----KMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVI 144
           +     K          G+                +   I  P V+KPL   S  G  ++
Sbjct: 98  NFTMNRKAIRDLAAKELGLKTARYFYAKTLDELKAAAAKIGFPCVVKPLMSSSGKGQSLV 157

Query: 145 KKDQSIPLDLLQSSSWNHGD--QLLIEQYVDGIE----LTCGVMGDASLDVTEIA-VPKS 197
           K    +        S + GD  +L+IE+++        LT       +L    I  V K 
Sbjct: 158 KNADELEHAWEYGCSGSRGDIRELIIEEFIKFDSEITLLTVTQKNGPTLFCPPIGHVQKG 217

Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
             Y               PA I     KE + +A    +A+   G+   +F     +  V
Sbjct: 218 GDY----------RESFQPAHIDPAHLKEAEEMAEKVTRALTGAGLWGVEFFLSHENG-V 266

Query: 258 FWLEINVQP---GM 268
           ++ E++ +P   GM
Sbjct: 267 YFSELSPRPHDTGM 280


>gi|312865223|ref|ZP_07725451.1| carbamoyl-phosphate synthase, large subunit [Streptococcus downei
           F0415]
 gi|311099334|gb|EFQ57550.1| carbamoyl-phosphate synthase, large subunit [Streptococcus downei
           F0415]
          Length = 1059

 Score = 76.7 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 50/296 (16%), Positives = 108/296 (36%), Gaps = 34/296 (11%)

Query: 25  ALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNVLHGNFG 63
           AL + G++V  ++        D+ +                +L   +PD     L G  G
Sbjct: 36  ALREEGYEVVLVNSNPATIMTDKEIADKVYIEPITIEFVTRILRKERPDALLPTLGGQTG 95

Query: 64  EDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFT 117
            +  ++     IL+ L +    + + A   + D+   KQ++     P+  S +VN  +  
Sbjct: 96  LNMAMELSKAGILDELGVELLGTKLSAIDQAEDRDLFKQLMEDLEQPIPESQIVNTVQEA 155

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IE 176
           +D    I  P +++P       G  +    + +          +   Q LIE+ + G  E
Sbjct: 156 LDFAAEIGYPVIVRPAFTLGGTGGGMCANKEELQEIAENGLKLSPVTQCLIERSIAGFKE 215

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +   VM D++ +   + V   + +     ++  +        +     + ++  +    +
Sbjct: 216 IEYEVMRDSADNA--LVVCNMENFDPVGIHTGDSIVFAPTQTLSDIENQMLRDASLKIIR 273

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           A+   G        DP S K + +E+N  P ++  S     +   GY   +L   +
Sbjct: 274 ALKIEGGCNVQLALDPHSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAKI 325



 Score = 75.5 bits (185), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 32/232 (13%), Positives = 77/232 (33%), Gaps = 24/232 (10%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYV 129
           L    +    + +     + D+   +Q +    +P  P            S   I  P +
Sbjct: 646 LSKAGVKILGTQVADLDRAEDRDLFEQALQDLDIPQPPGHTATNEEEAVASARQIGFPVL 705

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS--- 186
           ++P        + +++ +  +   +  +   +    +L++ Y+ G E     + D     
Sbjct: 706 VRPSYVLGGRAMEIVENEADLRSYMRTAVKASPDHPVLVDSYLVGRECEVDAISDGKDVL 765

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISR 245
           +      + ++  +S        +S  V P + +  +I   +          + C G+  
Sbjct: 766 IPGIMEHIERAGVHS-------GDSMAVYPPQTLSQEIIDTITDYTKRLAIGLNCYGMMN 818

Query: 246 SDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEMAAYA----GYSFREL 288
             F+      KV+ +E+N       P ++ V+  P          G S  +L
Sbjct: 819 IQFVIH--DDKVYVIEVNPRASRTVPFLSKVTDIPMAQVATKLILGQSLADL 868


>gi|237746940|ref|ZP_04577420.1| biotin carboxylase [Oxalobacter formigenes HOxBLS]
 gi|229378291|gb|EEO28382.1| biotin carboxylase [Oxalobacter formigenes HOxBLS]
          Length = 453

 Score = 76.7 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 81/221 (36%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +      +  +  DK+ +KQ +   G+P  P    
Sbjct: 77  AIHPGYGFLSENADFAERVEKSGFVFIGPRSESIRIMGDKVTAKQAMIKAGIPCVPGSDG 136

Query: 112 LVNRFTMD---SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
            ++    +   +   I  P +IK   GG   G+ V+  + S+   +     ++ S     
Sbjct: 137 ALSDDPQEIISTARKIGFPVIIKAAGGGGGRGMRVVHTEASLLNAVSMTKAEAQSAFGNP 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           ++ +E++++    +   V+ D   +   +            K             IP  +
Sbjct: 197 EVYMEKFLENPRHIEIQVLADDFKNAIWLGERDCSMQRRHQK----VIEEAPAPDIPRRL 252

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              +      A + IG RG    +FL+   + + +++E+N 
Sbjct: 253 VDRIGDRCAEACRKIGYRGAGTFEFLY--ENGEFYFIEMNT 291


>gi|188532835|ref|YP_001906632.1| Urea amidolyase [Erwinia tasmaniensis Et1/99]
 gi|188027877|emb|CAO95734.1| Urea amidolyase [Erwinia tasmaniensis Et1/99]
          Length = 1205

 Score = 76.7 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 26/194 (13%), Positives = 64/194 (32%), Gaps = 12/194 (6%)

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN---RFTMDSQHLISPPYVIKPLKG 135
           +             K R++++ ++ GVP+ P   +       + +   I  P ++K   G
Sbjct: 102 FVGPSAQQIGEFGLKHRARELAAAAGVPMTPGTPLLNSLDEALGAAAKIGYPVMLKSTAG 161

Query: 136 GSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVT 190
           G  +G+     + ++             +     + +E+ +D    +   + GD    V 
Sbjct: 162 GGGIGLTRCADEAALSAAWESVRRLGEQFFSHAGVFLERCIDRARHVEVQIFGDGKGKVV 221

Query: 191 EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
            +            K             +P    + +   A    + +  R     ++++
Sbjct: 222 ALGERDCSLQRRNQK----VVEETPAPNLPTATRRALLASAVRLGERVNYRSAGTVEYIY 277

Query: 251 DPLSRKVFWLEINV 264
           D    + F+LE+N 
Sbjct: 278 DAAHDEFFFLEVNT 291


>gi|270007015|gb|EFA03463.1| hypothetical protein TcasGA2_TC013459 [Tribolium castaneum]
          Length = 638

 Score = 76.7 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 41/220 (18%), Positives = 83/220 (37%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+    ++LE  +I +            DK+ SK++  + GV V P    
Sbjct: 54  AVHPGYGFLSENASFVSLLEDEKIVFVGPPAGVINKLGDKLASKKLAQNAGVNVIPGFDG 113

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGDQ 165
            I   +  ++    I  P +IK   GG   G+ + + D            +++S    ++
Sbjct: 114 EIRDAKHCVEIARQIGYPVMIKASAGGGGKGMRIARNDDDARNGFQMSTEEAASSFGDNR 173

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           +L+E+ ++    +   V+GD    +  +   +        K             + ++  
Sbjct: 174 ILLEKLIESPRHVEVQVLGDKHGRIVYLNERECSIQRRNQKI----VEEAPSTFLDVETR 229

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K +   A      IG       +FL D  +R  ++LE+N 
Sbjct: 230 KAMGEQAVRLCTDIGYHSAGTVEFLVDK-NRAFYFLEMNT 268


>gi|163737430|ref|ZP_02144847.1| propionyl-CoA carboxylase, alpha subunit [Phaeobacter gallaeciensis
           BS107]
 gi|161388956|gb|EDQ13308.1| propionyl-CoA carboxylase, alpha subunit [Phaeobacter gallaeciensis
           BS107]
          Length = 696

 Score = 76.7 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 76/221 (34%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      L    + +    + A     DK+ SK++    GV   P  + 
Sbjct: 92  AVHPGYGFLSENAKFAEALAAEGVAFVGPPVGAIESMGDKITSKKIAQEAGVSTVPGYMG 151

Query: 114 NRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGD 164
                D      + I  P +IK   GG   G+ +   D              ++S+   D
Sbjct: 152 LIADADEAVKISNEIGYPVMIKASAGGGGKGMRIAWSDAEAREGFQSSKNEAANSFG-DD 210

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           ++ IE++V     +   V+ DA  +   +   +        K             +  D 
Sbjct: 211 RIFIEKFVTQPRHIEIQVLCDAHGNGIYLGERECSIQRRNQK----VVEEAPSPFLDEDT 266

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +   A    +A+G       +F+ D   +  ++LE+N 
Sbjct: 267 RRAMGEQAVALAKAVGYASAGTVEFIVDG-DKNFYFLEMNT 306


>gi|195953807|ref|YP_002122097.1| acetyl-CoA carboxylase, biotin carboxylase [Hydrogenobaculum sp.
           Y04AAS1]
 gi|195933419|gb|ACG58119.1| acetyl-CoA carboxylase, biotin carboxylase [Hydrogenobaculum sp.
           Y04AAS1]
          Length = 472

 Score = 76.7 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 47/239 (19%), Positives = 88/239 (36%), Gaps = 24/239 (10%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +D+ +SVG     + P   F   +  F E      + E   I +        AL  DK R
Sbjct: 66  VDLAKSVGA--DAIHPGYGFLAENEGFAE------LCEKNGITFIGPSAEVIALMGDKAR 117

Query: 96  SKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI- 150
           SK+V+   GVP  P     +      ++    I  P ++K   GG   GI + K ++ + 
Sbjct: 118 SKEVMKKAGVPTVPGSDGILKSVEEAVEIAKEIGYPVLLKASAGGGGRGIRICKDEEELK 177

Query: 151 ---PLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
                   ++        LL+E+Y+ +   +   V+GD   +V              ++ 
Sbjct: 178 RNYEAAYSEAQKAFGRGDLLLEKYIQNPKHIEFQVLGDKYGNVI-----HLGERDCSVQR 232

Query: 207 SSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +     + P+  +     K    +   A + IG       +F    L   ++++E+N 
Sbjct: 233 RNQKLIEIAPSLVLNEAKRKHYGEIVAKAAKEIGYYSAGTMEF-VSDLEGNIYFIEMNT 290


>gi|60681705|ref|YP_211849.1| phosphoribosylglycinamide formyltransferase 2 [Bacteroides fragilis
           NCTC 9343]
 gi|265763726|ref|ZP_06092294.1| phosphoribosylglycinamide formyltransferase 2 [Bacteroides sp.
           2_1_16]
 gi|81315230|sp|Q5LD90|PURT_BACFN RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|60493139|emb|CAH07920.1| phosphoribosylglycinamide formyltransferase 2 [Bacteroides fragilis
           NCTC 9343]
 gi|263256334|gb|EEZ27680.1| phosphoribosylglycinamide formyltransferase 2 [Bacteroides sp.
           2_1_16]
 gi|301163248|emb|CBW22798.1| phosphoribosylglycinamide formyltransferase 2 [Bacteroides fragilis
           638R]
          Length = 388

 Score = 76.7 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 44/254 (17%), Positives = 85/254 (33%), Gaps = 36/254 (14%)

Query: 32  KVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSM 91
           +V  +     +  ++   +PD+    +     E         L +       ++ SA ++
Sbjct: 46  EVFDMLNGEELERIVKKHRPDIIVPEIEAIRTE--------RLYDFEKEGIQVVPSARAV 97

Query: 92  D-----KMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVI 144
           +     K          G+               ++   I  P V+KPL   S  G  ++
Sbjct: 98  NYTMNRKAIRDLAAKELGLKTAKYYYAKSLEELKEAAEKIGFPCVVKPLMSSSGKGQSLV 157

Query: 145 KKDQSIPLDLLQSSSWNHGD--QLLIEQYVDGIE----LTCGVMGDASLDVTEIA-VPKS 197
           K    +        + + GD  +L+IE+++        LT       +L    I  V K 
Sbjct: 158 KSAAELEHAWEYGCNGSRGDIRELIIEEFIKFDSEITLLTVTQKNGPTLFCPPIGHVQKG 217

Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
             Y               PA I     KE + +A    +A+   G+   +F     +  V
Sbjct: 218 GDY----------RESFQPAHIDPAHLKEAEDMAEKVTRALTGAGLWGVEFFLSHENG-V 266

Query: 258 FWLEINVQP---GM 268
           ++ E++ +P   GM
Sbjct: 267 YFSELSPRPHDTGM 280


>gi|225869918|ref|YP_002745865.1| biotin carboxylase subunit of acetyl-CoA carboxylase [Streptococcus
           equi subsp. equi 4047]
 gi|225699322|emb|CAW92697.1| biotin carboxylase subunit of acetyl-CoA carboxylase [Streptococcus
           equi subsp. equi 4047]
          Length = 454

 Score = 76.7 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 76/220 (34%), Gaps = 16/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  FG   E+     + E + I +            DK+ ++  +   GVPV P    
Sbjct: 77  AIHPGFGFLSENSKFVTMCEEMNIKFIGPSGAVMDKMGDKINARAEMIKAGVPVIPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG----DQ 165
            +   +  ++    I  P ++K   GG   GI  ++ +  +      +S    G      
Sbjct: 137 EVYNAQEALEIARQIGYPVMLKAAAGGGGKGIRKVESEADLEAAFNAASQEALGAFGNGA 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+ +     +   ++GD+   V  +            K             I   + 
Sbjct: 197 MYLEKVIYPARHIEVQILGDSQGHVIHLGERDCSLQRNNQKVL----EESPSIAIGTTLR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +   A  A +A+        +FL D  S   +++E+N 
Sbjct: 253 QRMGEAAVRAAKAVSYENAGTIEFLLDEASGDFYFMEMNT 292


>gi|84686286|ref|ZP_01014181.1| propionyl-CoA carboxylase, alpha subunit [Maritimibacter
           alkaliphilus HTCC2654]
 gi|84665813|gb|EAQ12288.1| propionyl-CoA carboxylase, alpha subunit [Rhodobacterales bacterium
           HTCC2654]
          Length = 681

 Score = 76.7 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 74/221 (33%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      LE   + +      A     DK+ SK++     V   P  + 
Sbjct: 77  AVHPGYGFLSENAKFAEALEAAGVAFIGPPKGAIEAMGDKITSKKIAQDANVSTVPGYMG 136

Query: 114 NRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGD 164
                +      + I  P +IK   GG   G+ +   D              ++S+   D
Sbjct: 137 LIEDAEEAVKISNEIGYPVMIKASAGGGGKGMRIAWNDTEAREGFQSSKNEAANSFG-DD 195

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           ++ IE++V     +   V+ DA  +   +   +        K             +  + 
Sbjct: 196 RIFIEKFVTQPRHIEIQVLCDAHGNGIYLGERECSIQRRNQK----VVEEAPSPFLDEET 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            K +   A    +A+G       +F+ D      ++LE+N 
Sbjct: 252 RKAMGEQAVALAKAVGYASAGTVEFIVDGEKN-FYFLEMNT 291


>gi|125974372|ref|YP_001038282.1| carbamoyl-phosphate synthase large subunit [Clostridium
           thermocellum ATCC 27405]
 gi|256005549|ref|ZP_05430509.1| carbamoyl-phosphate synthase, large subunit [Clostridium
           thermocellum DSM 2360]
 gi|281418918|ref|ZP_06249936.1| carbamoyl-phosphate synthase, large subunit [Clostridium
           thermocellum JW20]
 gi|125714597|gb|ABN53089.1| carbamoyl-phosphate synthase large subunit [Clostridium
           thermocellum ATCC 27405]
 gi|255990457|gb|EEU00579.1| carbamoyl-phosphate synthase, large subunit [Clostridium
           thermocellum DSM 2360]
 gi|281407375|gb|EFB37635.1| carbamoyl-phosphate synthase, large subunit [Clostridium
           thermocellum JW20]
 gi|316941530|gb|ADU75564.1| carbamoyl-phosphate synthase, large subunit [Clostridium
           thermocellum DSM 1313]
          Length = 1067

 Score = 76.7 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 32/232 (13%), Positives = 85/232 (36%), Gaps = 18/232 (7%)

Query: 68  VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ--HLIS 125
           +   L    +    + + +  ++ D+ R   ++   G+P+        +         I 
Sbjct: 646 LAGTLAKEGVNILGTSVESIDIAEDRDRFLNLLEELGIPLPEGDTAFSYEEAKAIAQRIG 705

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            P +++P        + V+  D+++   +  +        +LI++Y++G E+    + D 
Sbjct: 706 YPVLVRPSYVLGGRAMEVVYNDETLKEYMQLAVGLATNHPVLIDKYIEGKEVEVDGICDG 765

Query: 186 S---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCR 241
               +      + ++  +S        +S  + P + +  +    +        +A+   
Sbjct: 766 EDVLIPGIMEHIERAGVHS-------GDSISIYPPQTLDDETKNTIVDYTIRLAKALKIV 818

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           G+    F+ D  S KV+ +E+N +   T     P M+   G    ++    +
Sbjct: 819 GLFNIQFVIDRHS-KVYVIEVNPRASRT----VPVMSKVTGIPMVDVATKFI 865



 Score = 71.3 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 50/287 (17%), Positives = 104/287 (36%), Gaps = 35/287 (12%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQIDVDRS---------------------VGLV 45
           G ++E + S   G     AL + G +V  ++ + +                     V  +
Sbjct: 21  GQAAEFDYS---GTQACKALREEGIEVVLVNSNPATIMTDTQSADRVYIEPITLDFVKKI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   KPD     L G  G +  +Q     IL+ + I    + + +   + D+   K+ + 
Sbjct: 78  IRREKPDGILASLGGQTGLNMAIQLAEDGILDEMGIELLGTSLESIRKAEDRELFKKTMQ 137

Query: 102 SCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G  V  S +       +     +  P +I+P       G  +    +       +   
Sbjct: 138 EIGEKVPLSTIATDLDSAVKFAEEVGFPIIIRPAYTLGGTGGGIAHNMEEFKYICGKGLK 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   Q+L+EQ V G  E+   V+ D + +   I     + +     ++  +S  V P +
Sbjct: 198 LSLIHQVLLEQSVAGWKEIEYEVIRDGADNSIIIC--NMENFDPVGVHT-GDSIVVAPCQ 254

Query: 219 IPLDIYKEVQRLA-FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              D+  ++ R A     +A+  +G     +  +P S +   +E+N 
Sbjct: 255 TLSDVEAQMLRAASLKIIRALNIKGGCNIQYALNPNSFEYVVIEVNP 301


>gi|330807323|ref|YP_004351785.1| Biotin carboxylase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327375431|gb|AEA66781.1| Biotin carboxylase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 451

 Score = 76.7 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 77/222 (34%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         L  DK+ +K  + + GVP  P    
Sbjct: 80  AIHPGYGFLAENADFAEQVENSGFAFIGPKADTIRLMGDKVSAKHAMIAAGVPTVPGSDG 139

Query: 112 LVNRFTMDSQHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGD 164
            +      +  +   +  P +IK   GG   G+ V+ K++ +         ++ +     
Sbjct: 140 PLPEDEETALRIGREVGYPVIIKAAGGGGGRGMRVVHKEEDLISSAKLTRSEAGAAFGNP 199

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+++     +   V+ D                   L+          PA  I   
Sbjct: 200 MVYLEKFLTNPRHVEVQVLSDGQGHAI-----HLGDRDCSLQRRHQKVLEEAPAPGIDEQ 254

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +EV      A   IG RG    +FL+   + + +++E+N 
Sbjct: 255 AREEVLARCVKACIDIGYRGAGTFEFLY--ENGRFYFIEMNT 294


>gi|149181856|ref|ZP_01860345.1| acetyl-CoA carboxylase [Bacillus sp. SG-1]
 gi|148850395|gb|EDL64556.1| acetyl-CoA carboxylase [Bacillus sp. SG-1]
          Length = 450

 Score = 76.7 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 41/221 (18%), Positives = 86/221 (38%), Gaps = 18/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     +     I +      A +    K  +++ +   GVP+ P    
Sbjct: 77  AIHPGYGFLAENADFAELCRECNITFVGPSPEAISKMGTKDVARETMRKAGVPIVPGSQG 136

Query: 111 ILVNRFTMDS-QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGD 164
           I+ +     S    I  P +IK   GG   GI V K +Q +   +       ++++    
Sbjct: 137 IVKDAEEAVSLAEKIGYPVIIKATAGGGGKGIRVAKTEQELIKGVNITQQEAATAFG-NP 195

Query: 165 QLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            + IE++++    +   V+GD   +V  +            K             +  + 
Sbjct: 196 GVYIEKFIEDFRHVEIQVLGDNFGNVIHLGERDCTIQRRLQK----LIEETPSPALDGET 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +++ + A  A QA+   G    +F+FD ++ K +++E+N 
Sbjct: 252 REQMGQAAVKAAQAVDYSGAGTVEFIFDHVNNKFYFMEMNT 292


>gi|313837185|gb|EFS74899.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium
           acnes HL037PA2]
 gi|314971957|gb|EFT16055.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium
           acnes HL037PA3]
          Length = 1068

 Score = 76.7 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 46/268 (17%), Positives = 101/268 (37%), Gaps = 30/268 (11%)

Query: 25  ALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNVLHGNFG 63
           AL++ G++V  ++        DR +                +L   +PD     L G  G
Sbjct: 36  ALKEEGYEVILVNSNPATIMTDRDIADKVYIEPITFEFVSSILRRERPDAIVPTLGGQTG 95

Query: 64  EDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
            +   +     IL+ L I    + + A   + D+   KQ++   G PV  S +V+     
Sbjct: 96  LNMATELAKSGILDELGIELLGTKLSAIEKAEDRDLFKQLMDELGQPVPASEIVHTIDEA 155

Query: 120 SQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IE 176
            +  + I  P +++P       G  +   +  +   + +    +   + L+EQ + G  E
Sbjct: 156 VKVGNTIGYPLIVRPAYTLGGTGGGLCHDEAELERIVGKGLELSPVTECLVEQSIAGYKE 215

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +   +M D + +   + V   + +     ++  +        +    Y+ ++  +    +
Sbjct: 216 IEYEMMRDGADNT--MVVCTMENFDPVGVHTGDSIVFAPTQTLTDVEYEMLRDASIEIVR 273

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINV 264
           A+G  G        DP S + + +E+N 
Sbjct: 274 ALGIEGGCNVQLALDPNSFQYYVIEVNP 301



 Score = 73.6 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 44/297 (14%), Positives = 107/297 (36%), Gaps = 36/297 (12%)

Query: 24  SALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLV------ 68
            A++ AG++   +         D   S  L    L  +   NV+      DG++      
Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSISDKLYFEPLTFEDVMNVID-LEQPDGVIVQFGGQ 637

Query: 69  -----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQ 121
                   L    +P   + +     + D+   + +++  G+P  P          +   
Sbjct: 638 TAINLAGPLSAAGVPILGTQLADLDRAEDREGFESLLAELGIPQAPGGTARSSEEALAVA 697

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
             +  P +++P        + ++   + +   +  +   +    +L+++Y++G+E     
Sbjct: 698 EELGYPVLVRPSYVIGGRAMAIVTSTKELKRYMRDAVHTSPDKPVLVDRYLNGLECEVDA 757

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGC 240
           + D     T++ +P    +       S +S  V P  ++   +   +  +     + +  
Sbjct: 758 ICDG----TDVLIPGIMEHIERAGVHSGDSMAVYPPQRMSQQVTDRIVEVTTKLARGLNT 813

Query: 241 RGISRSDFLF--DPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +GI    F+   DP S +  V+ +E N +   T     P ++   G S  E+   ++
Sbjct: 814 KGILNIQFVIANDPTSGEETVYVIEANPRASRT----VPFLSKVTGVSMAEVATQII 866


>gi|168217337|ref|ZP_02642962.1| carbamoyl-phosphate synthase, large subunit [Clostridium
           perfringens NCTC 8239]
 gi|182380614|gb|EDT78093.1| carbamoyl-phosphate synthase, large subunit [Clostridium
           perfringens NCTC 8239]
          Length = 1067

 Score = 76.7 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 38/261 (14%), Positives = 95/261 (36%), Gaps = 21/261 (8%)

Query: 38  VDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSK 97
            +  V  ++   KPD       G       +   L+   IP   +      L+ D+ +  
Sbjct: 617 TEEDVLNIIDKEKPDGVILQFGGQTA--IKLAKFLKEKNIPTLGTTSDQIDLAEDREQFD 674

Query: 98  QVVSSCGV--PVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
            ++    +  P    +      ++    +  P +++P       G+ +   ++ +   L 
Sbjct: 675 DLLERLNIARPKGKGVWSLEEGLEEARRLGFPILVRPSFVLGGQGMEITHDEEELTYYLT 734

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDAS---LDVTEIAVPKSDFYSYELKYSSLNST 212
            +   +  + +LI++Y+ G E+    + D     +      + ++  +S        +S 
Sbjct: 735 NAFEKDSKNPILIDKYLMGREIEVDAISDGEDVLVPGIMEHLERAGVHS-------GDSI 787

Query: 213 HVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271
            + PA  I   I ++V         +IG +G+    F+      K++ +E+N +   T  
Sbjct: 788 TMYPAQNISDKIKEDVLDYTKKLALSIGIKGMINIQFI--EFEGKLYVIEVNPRASRT-- 843

Query: 272 SIFPEMAAYAGYSFRELLLWM 292
              P ++  +G    ++   +
Sbjct: 844 --VPYISKVSGVPIVDIATRI 862



 Score = 62.1 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 51/290 (17%), Positives = 106/290 (36%), Gaps = 41/290 (14%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQID-------VDRSVGL--------------V 45
           G ++E + S   G     AL++ G +V  ++        D+ +                V
Sbjct: 21  GQAAEFDYS---GTQACQALKEEGIEVVLVNSNPATIMTDKEIADKVYLEPLTVEFVEKV 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGL-------VQAILELLEIPYTHSGILASALSMDKMRSKQ 98
           +   +PD   ++L G  G+ GL        + IL+   +    + I +     D+   + 
Sbjct: 78  IEKERPD---SLLAGMGGQTGLNLAVELYEKGILDKYNVKVIGTSIESIKEGEDRELFRD 134

Query: 99  VVSSCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
           +++    PV  S ++      +     I  P +++P       G  +   ++ +   L  
Sbjct: 135 MMNRINQPVIQSEIITDLDAGIAFARKIGYPVIVRPAYTLGGTGGGIANNEEELIETLTS 194

Query: 157 SSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215
               +   Q+L+E+ V G  E+   VM D            +      +   + +S  V 
Sbjct: 195 GLQLSTIGQVLLEKSVKGWKEIEYEVMRD---SFGNCITVCNMENIDPVGIHTGDSIVVA 251

Query: 216 PAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           P++ +    Y+ ++  +     A+G  G     F  +P S +   +EIN 
Sbjct: 252 PSQTLSDKEYQMLRSASIDIINAVGIEGGCNVQFALNPHSFEYAVIEINP 301


>gi|153940513|ref|YP_001391099.1| carbamoyl phosphate synthase large subunit [Clostridium botulinum F
           str. Langeland]
 gi|167006438|sp|A7GE89|CARB_CLOBL RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|152936409|gb|ABS41907.1| carbamoyl-phosphate synthase, large subunit [Clostridium botulinum
           F str. Langeland]
 gi|295319142|gb|ADF99519.1| carbamoyl-phosphate synthase, large subunit [Clostridium botulinum
           F str. 230613]
          Length = 1068

 Score = 76.7 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 42/281 (14%), Positives = 98/281 (34%), Gaps = 33/281 (11%)

Query: 22  CASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLV---- 68
           C  AL+  G +   +         D D S  L    L  +   N++      DG++    
Sbjct: 580 CVKALKKLGIETIIVNNNPETVSTDFDVSDKLYFEPLTEEDVLNIVE-KEKPDGVILQFG 638

Query: 69  -------QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV--PVCPSILVNRFTMD 119
                     L+   IP   +      ++ D+ +  +++    +  P    I      ++
Sbjct: 639 GQTAIKLANFLKEKNIPTLGTTADQIDMAEDREKFDELLEKLKIARPKGKGIWSVEDGLE 698

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
               +  P +++P       G+ +   ++ +   L  +   +  + +LI++Y+ G E+  
Sbjct: 699 EAKKLGFPVLVRPSYVLGGQGMEITHDEKELVYYLSNAFQKDKKNPILIDKYLMGREIEV 758

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
             + D    +    +   +       +S  + T      +  DI +++          IG
Sbjct: 759 DAISDGEDVLIPGIMEHLERAGV---HSGDSITMYPTQNVSKDIKEKILEYTKKLALGIG 815

Query: 240 CRGISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFP 275
            +G+    F+       ++ +E+N       P ++ VS  P
Sbjct: 816 IKGMINIQFI--EFQGNLYVIEVNPRASRTVPYISKVSKVP 854



 Score = 61.3 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 59/290 (20%), Positives = 113/290 (38%), Gaps = 41/290 (14%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQID-------VDRSVGL--------------V 45
           G ++E + S   G      L++ G +V  I+        D+ V                V
Sbjct: 21  GQAAEFDYS---GTQACEGLKEEGVEVVLINSNPATIMTDKKVADKVYLEPLTVEFVEKV 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLV-------QAILELLEIPYTHSGILASALSMDKMRSKQ 98
           +A  +PD   ++L G  G+ GL        + IL+   +    + I +     D+   + 
Sbjct: 78  IAKERPD---SLLAGMGGQTGLNLAVELYDKGILKKYGVNVIGTSIESIKEGEDRELFRN 134

Query: 99  VVSSCGVPVCPSILVNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
           V+S    PV  S +V       D  + I  P +++P       G  + + ++ +   L  
Sbjct: 135 VMSRINEPVIQSEIVTDMEDGKDFANKIGYPIIVRPAYTLGGTGGGIAESEEELDEILAL 194

Query: 157 SSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215
               +   Q+L+E+ V G  E+   VM D+  +   I V   +     +   + +S  V 
Sbjct: 195 GLQLSSIGQVLLEKSVKGWKEIEYEVMRDSRGN--CITVCNMENID-PVGIHTGDSIVVA 251

Query: 216 PAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           P++ +    Y+ ++  +     +IG +G     F  +P S +   +EIN 
Sbjct: 252 PSQTLSDKEYQMLRSASINILNSIGIKGGCNVQFALNPNSFEYAVIEINP 301


>gi|116254364|ref|YP_770202.1| pyruvate carboxylase [Rhizobium leguminosarum bv. viciae 3841]
 gi|115259012|emb|CAK10121.1| putative pyruvate carboxylase [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 1154

 Score = 76.7 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 78/221 (35%), Gaps = 18/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-L 112
            +H  +G   E            I +            +K+ ++ +  S GVPV P+   
Sbjct: 85  AIHPGYGLLSESPEFVDACNKAGIIFIGPKADTMRQLGNKVAARNLAISVGVPVVPATGP 144

Query: 113 VNRFTMDSQHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
           +     +   +   I  P ++K   GG   G+  I+  + +  ++ ++          D+
Sbjct: 145 LPEDMAEVAKMADGIGYPVMLKASWGGGGRGMRAIRDPKDLAREVTEAKREAMAAFGKDE 204

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           + +E+ V+    +   V+GD   +V  +            K          PA  +    
Sbjct: 205 VYLEKLVERARHVESQVLGDTHGNVVHLFERDCSIQRRNQK-----VVERAPAPYLSEAQ 259

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +E+   +     A    G    ++L D  + K +++E+N 
Sbjct: 260 RQELAAYSLKIAAATNYIGAGTVEYLMDADTGKFYFIEVNP 300


>gi|332291304|ref|YP_004429913.1| acetyl-CoA carboxylase, biotin carboxylase [Krokinobacter diaphorus
           4H-3-7-5]
 gi|332169390|gb|AEE18645.1| acetyl-CoA carboxylase, biotin carboxylase [Krokinobacter diaphorus
           4H-3-7-5]
          Length = 450

 Score = 76.7 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 79/221 (35%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     I E  +I +  +     +   DK  +K+ + + GVP  P    
Sbjct: 77  AIHPGYGFLSENAKFSKICEEHDIKFIGASAEMISKMGDKATAKKTMKAAGVPCVPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGD 164
            I               P ++K   GG   G+  + K + +           ++++ +  
Sbjct: 137 IIKDFEECQKLAKETGYPVMLKATAGGGGKGMRAVWKKEDLLKAWEGARQESAAAFGNDG 196

Query: 165 QLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
             + E+ ++    +   ++GD++     ++           K     +       +  D+
Sbjct: 197 MYM-EKLIEEPRHIEIQIVGDSNGKACHLSERDCSVQRRHQK----LTEETPSPFMTDDL 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +   A  A + I   G    +FL D   R  +++E+N 
Sbjct: 252 RERMGEAAVKAAEYIKYEGAGTVEFLVDKH-RNFYFMEMNT 291


>gi|306828954|ref|ZP_07462146.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus mitis
           ATCC 6249]
 gi|322374858|ref|ZP_08049372.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Streptococcus
           sp. C300]
 gi|304429132|gb|EFM32220.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus mitis
           ATCC 6249]
 gi|321280358|gb|EFX57397.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Streptococcus
           sp. C300]
          Length = 455

 Score = 76.7 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 75/220 (34%), Gaps = 16/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  FG   E+     + + + I +            DK+ +++ +   GVPV P    
Sbjct: 77  AIHPGFGFLSENSKFATMCDEVGIKFIGPSGAVMDTMGDKINAREQMIKAGVPVIPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
            +      +     I  P ++K   GG   GI  ++K + +      +SS          
Sbjct: 137 EVHTAEEALAVAEKIGYPVMLKASAGGGGKGIRKVEKAEDLVAAFETASSEAKANFGNGA 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+ +     +   ++ D    V  +            K             I   + 
Sbjct: 197 MYLERVIYPARHIEVQILADQEGHVVHLGERDCSLQRNNQKVL----EESPSIAIGKTLR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            E+   A  A +++G       +FL D  S   +++E+N 
Sbjct: 253 NEIGAAAVRAAESVGYENAGTIEFLLDEASGNFYFMEMNT 292


>gi|303244496|ref|ZP_07330831.1| acetyl-CoA carboxylase, biotin carboxylase [Methanothermococcus
           okinawensis IH1]
 gi|302485194|gb|EFL48123.1| acetyl-CoA carboxylase, biotin carboxylase [Methanothermococcus
           okinawensis IH1]
          Length = 507

 Score = 76.7 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 84/221 (38%), Gaps = 20/221 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+       E   I +    + A      K+ +K+++ + GVPV P    
Sbjct: 77  AIHPGYGFLSENPKFAKACEDRGIVFIGPPVEAIESMGSKINAKRIMKNAGVPVLPGRED 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
            I      ++    I  P +IK   GG  +G+ V    Q +   +      + S      
Sbjct: 137 PIEDPNEVIEVAEEIGYPVIIKASAGGGGMGMGVAYNKQELIETIESTKSIAQSAFGDST 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDI 223
           + IE+Y++    +   ++ D   +V  +   +        K          PA I   ++
Sbjct: 197 VFIEKYLEKPRHIEIQILADKYGNVVHLGDRECSIQRRHQKL-----IEEAPAPIMTEEL 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             ++   A  A +AI        +FL++  + + ++LE+N 
Sbjct: 252 RVKMGEAAVKAAKAINYHSAGTVEFLYN--NGEFYFLEMNT 290


>gi|294499143|ref|YP_003562843.1| putative phosphoribosylglycinamide synthetase [Bacillus megaterium
           QM B1551]
 gi|294349080|gb|ADE69409.1| putative Phosphoribosylglycinamide synthetase [Bacillus megaterium
           QM B1551]
          Length = 420

 Score = 76.7 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 46/233 (19%), Positives = 91/233 (39%), Gaps = 26/233 (11%)

Query: 71  ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVI 130
           + E L +P         +   +K + ++V+    +       V          +  P V+
Sbjct: 93  LTEELNLP--GLSPFVISNCRNKQKMREVLKDNDLNTPYFKEVENTEELKNLSLPYPVVV 150

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ---------LLIEQYVDGIEL---T 178
           KP  G SS G+      + +   + +    N  D          ++IEQ++DG E    T
Sbjct: 151 KPSNGFSSQGVSRANNKKELIDSIEKVRRVNEEDLSKFTKNKTGMVIEQFIDGPEFAIET 210

Query: 179 CGVMGDA-SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
             V G+   L +      K  F+            ++ PA++  ++++ + R A  A  A
Sbjct: 211 FSVEGEVYVLSIGYKGNSKGPFF--------EEGVYIAPAQLEENVWQSIAREAARAANA 262

Query: 238 IGCR-GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           +G   G +  +   DP   K + +EI  + G + +S +  +    G ++ EL+
Sbjct: 263 LGIEDGPAHIELRLDPA-GKPYVIEIGARIGGSGISHY-IVKESTGINYMELV 313


>gi|229061611|ref|ZP_04198953.1| Pyruvate carboxylase [Bacillus cereus AH603]
 gi|228717702|gb|EEL69355.1| Pyruvate carboxylase [Bacillus cereus AH603]
          Length = 936

 Score = 76.7 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 30/243 (12%), Positives = 84/243 (34%), Gaps = 21/243 (8%)

Query: 35  QIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSM 91
            ID    +  ++   K +   + +H  +G   E+       E   I +         +  
Sbjct: 62  PIDAYLDIEGIIEIAKSNHV-DAIHPGYGFLSENIQFAKRCEEEGIIFIGPKSKHLDMFG 120

Query: 92  DKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147
           DK++++       +P+ P     +       +       P +IK   GG   G+ +++  
Sbjct: 121 DKVKARTQAQLAQIPIIPGSDGPVNSIEEVGEFAEKYDYPIIIKASLGGGGRGMRIVRAS 180

Query: 148 QSIPL----DLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSY 202
           + +         ++ +    D++ +E++V+    +   ++ D   +V  +          
Sbjct: 181 EELRESYNRAKSEAKAAFGNDEVYVEKFVEKPKHIEVQILADEEGNVVHLYE-----RDC 235

Query: 203 ELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
            ++        + P   +  D+ + +   A    + +        +FL      + +++E
Sbjct: 236 SVQRRHQKVVEIAPSVSLSDDLRQRICDAAVKLTKNVNYLNAGTVEFLV--KGDEFYFIE 293

Query: 262 INV 264
           +N 
Sbjct: 294 VNP 296


>gi|18311554|ref|NP_563488.1| carbamoyl phosphate synthase large subunit [Clostridium perfringens
           str. 13]
 gi|22095508|sp|Q8XHB3|CARB_CLOPE RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|18146238|dbj|BAB82278.1| carbamoyl-phosphate synthetase catalytic subunit [Clostridium
           perfringens str. 13]
          Length = 1067

 Score = 76.7 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 38/261 (14%), Positives = 95/261 (36%), Gaps = 21/261 (8%)

Query: 38  VDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSK 97
            +  V  ++   KPD       G       +   L+   IP   +      L+ D+ +  
Sbjct: 617 TEEDVLNIIDKEKPDGVILQFGGQTA--IKLAKFLKEKNIPTLGTTSDQIDLAEDREQFD 674

Query: 98  QVVSSCGV--PVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
            ++    +  P    +      ++    +  P +++P       G+ +   ++ +   L 
Sbjct: 675 DLLERLNIARPKGKGVWSLEEGLEEARRLGFPILVRPSFVLGGQGMEITHDEEELTYYLT 734

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDAS---LDVTEIAVPKSDFYSYELKYSSLNST 212
            +   +  + +LI++Y+ G E+    + D     +      + ++  +S        +S 
Sbjct: 735 NAFEKDSKNPILIDKYLMGREIEVDAISDGEDVLVPGIMEHLERAGVHS-------GDSI 787

Query: 213 HVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271
            + PA  I   I ++V         +IG +G+    F+      K++ +E+N +   T  
Sbjct: 788 TMYPAQNISDKIKEDVLDYTKKLALSIGIKGMINIQFI--EFEGKLYVIEVNPRASRT-- 843

Query: 272 SIFPEMAAYAGYSFRELLLWM 292
              P ++  +G    ++   +
Sbjct: 844 --VPYISKVSGVPIVDIATRI 862



 Score = 62.1 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 51/290 (17%), Positives = 106/290 (36%), Gaps = 41/290 (14%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQID-------VDRSVGL--------------V 45
           G ++E + S   G     AL++ G +V  ++        D+ +                V
Sbjct: 21  GQAAEFDYS---GTQACQALKEEGIEVVLVNSNPATIMTDKEIADKVYLEPLTVEFVEKV 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGL-------VQAILELLEIPYTHSGILASALSMDKMRSKQ 98
           +   +PD   ++L G  G+ GL        + IL+   +    + I +     D+   + 
Sbjct: 78  IEKERPD---SLLAGMGGQTGLNLAVELYEKGILDKYNVKVIGTSIESIKEGEDRELFRD 134

Query: 99  VVSSCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
           +++    PV  S ++      +     I  P +++P       G  +   ++ +   L  
Sbjct: 135 MMNRINQPVIQSEIITDLDAGIAFARKIGYPVIVRPAYTLGGTGGGIANNEEELIETLTS 194

Query: 157 SSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215
               +   Q+L+E+ V G  E+   VM D            +      +   + +S  V 
Sbjct: 195 GLQLSTIGQVLLEKSVKGWKEIEYEVMRD---SFGNCITVCNMENIDPVGIHTGDSIVVA 251

Query: 216 PAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           P++ +    Y+ ++  +     A+G  G     F  +P S +   +EIN 
Sbjct: 252 PSQTLSDKEYQMLRSASIDIINAVGIEGGCNVQFALNPHSFEYAVIEINP 301


>gi|328957537|ref|YP_004374923.1| carbamoyl-phosphate synthase large chain [Carnobacterium sp. 17-4]
 gi|328673861|gb|AEB29907.1| carbamoyl-phosphate synthase large chain [Carnobacterium sp. 17-4]
          Length = 1059

 Score = 76.7 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 49/296 (16%), Positives = 108/296 (36%), Gaps = 34/296 (11%)

Query: 25  ALEDAGFKVSQID-------VDRSVG--------------LVLAHLKPDLAFNVLHGNFG 63
           AL++ G++V  ++        D+ +                +L   +PD     L G  G
Sbjct: 36  ALKEEGYEVVLVNSNPATIMTDKEIADKVYIEPLTLEFVSQILRKERPDAIVPTLGGQTG 95

Query: 64  EDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFT 117
            +  ++     ILE L I    + + A   + D+   + ++     PV  S +V+     
Sbjct: 96  LNMAMELSNSGILEELSIELLGTKLSAIDQAEDRDLFRTLMKELNEPVPESEIVHTVAEA 155

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IE 176
           +     I  P +++P       G  +   ++ +   +      +  +Q L+E  + G  E
Sbjct: 156 LMFAEQIGFPLIVRPAFTMGGTGGGICDNEEELKEIVKNGLKLSPVNQCLVEISIAGYKE 215

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +   VM D + +   I V   + +     ++  +        +    ++ ++  +    +
Sbjct: 216 IEYEVMRDKNDNA--IVVCNMENFDPVGIHTGDSIVFAPTQTLTDKEHQMLRDSSLKIIR 273

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           A+G  G        DP S   + +E+N  P ++  S     +   GY   +L   +
Sbjct: 274 ALGIEGGCNVQLALDPDSFNYYIIEVN--PRVSRSS--ALASKATGYPIAKLAAKI 325



 Score = 63.6 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 28/225 (12%), Positives = 76/225 (33%), Gaps = 13/225 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC--PSILVNRFTMDSQHLISPPYV 129
           L  + I    + +     + ++   +Q ++   VP     +       +   + I  P +
Sbjct: 646 LTNMGITLLGTSVEDLDRAENRNLFEQALNELQVPQPLGDTATTESEAVVIANRIGYPVL 705

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           ++P       G+ ++     +   +  +   +    +LI++Y+ G E+    + D    +
Sbjct: 706 VRPSYVLGGRGMQIVDTQPDLENYMRNAVKASPEHPVLIDRYLVGKEVEVDAICDGETVL 765

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               +   +           +S  V P + +  +I   +          + C G+    F
Sbjct: 766 IPGIMEHIERSGVHS----GDSMAVYPPQTLSKEIQDTIVDYTTRLALGLNCIGMMNVQF 821

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +       V+ +E+N +   T     P ++   G    ++    +
Sbjct: 822 VLH--DNTVYVIEVNPRASRT----VPFLSKVTGILMAQVATKAI 860


>gi|317152916|ref|YP_004120964.1| carbamoyl-phosphate synthase large subunit [Desulfovibrio
           aespoeensis Aspo-2]
 gi|316943167|gb|ADU62218.1| carbamoyl-phosphate synthase, large subunit [Desulfovibrio
           aespoeensis Aspo-2]
          Length = 1078

 Score = 76.7 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 47/278 (16%), Positives = 102/278 (36%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G++V  I         D +             +V  ++   +PD    
Sbjct: 29  SGTQALKALKEEGYEVVLINSNPASIMTDPELADRTYIEPIEPETVARIIEKERPDALLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G  G +  +      +L+   +    + I A   +  +   +  + + G+ V  S +
Sbjct: 89  TLGGQTGLNTALAVAEMGVLDRFNVELIGANIAAINKAESREEFRAAMENIGLSVPESGI 148

Query: 113 VNRFTMD--SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                       +I+ P +++P       G  V    + +        + +   ++++E+
Sbjct: 149 CRNMEDVRRWGQIIAFPIIVRPAYTLGGSGGGVAYNMEELEEICANGLALSMKHEIMLER 208

Query: 171 YVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            + G  E    VM D + + V   ++   D           +S  V PA+ +  D Y+ +
Sbjct: 209 SILGWKEYELEVMRDRNDNCVIICSIENLDPMGVHT----GDSVTVAPAQTLTDDEYQMM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RNASLAIMREIGVETGGSNVQFAINPENGEMIVIEMNP 302



 Score = 61.7 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 34/224 (15%), Positives = 82/224 (36%), Gaps = 12/224 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYV 129
           L    +P   +   A   + D+ R KQ ++   +   P+      T   +    +  P V
Sbjct: 658 LMRAGVPLIGTSPDAIDRAEDRERFKQFLNKLHLKQPPNGTAMSMTAAKEIAQGLGFPLV 717

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLD 188
           ++P       G+ ++            S+  +     LI+++++  IE+    + D    
Sbjct: 718 LRPSYVLGGRGMDIVYSMDEFEAYFRDSARVSPEHPTLIDKFLEYAIEVDVDALADGEDV 777

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                +   +       +S  +++ + P  +  ++ +E++R      + +G  G+    F
Sbjct: 778 YIGGVMEHIEEAGI---HSGDSASVLPPYSLSSEMIREIERQTVAMARELGVVGLMNVQF 834

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
                  +VF +E+N +   T     P ++   G    +L   +
Sbjct: 835 AI--KDGEVFIIEVNPRASRT----VPFVSKATGVPLAKLATRV 872


>gi|256376789|ref|YP_003100449.1| phosphoribosylglycinamide synthetase [Actinosynnema mirum DSM
           43827]
 gi|255921092|gb|ACU36603.1| phosphoribosylglycinamide synthetase [Actinosynnema mirum DSM
           43827]
          Length = 415

 Score = 76.7 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 37/185 (20%), Positives = 78/185 (42%), Gaps = 19/185 (10%)

Query: 91  MDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQ 148
            DK R++  ++  GVP   S+ V      + +   +  P ++KP   G+SLG+I ++   
Sbjct: 113 RDKGRTRAALAEAGVPQPGSVPVKSVEDAVAAADRLGYPAILKPRGLGASLGVIKVEDAD 172

Query: 149 SIPLDLLQSSS--------WNHGDQLLIEQYVDGIELTC-GVMGDASLDVTEIAVPKSDF 199
            +  +   + +        ++    +L+E++V G E++   V+ D  +    +      +
Sbjct: 173 QVRANFAFTLAAEGPEPVVFDTDQPVLVEEFVSGEEISVDSVVVDGEVTPLFVGRKVVGY 232

Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR-GISRSDFLFDPLSRKVF 258
           + Y  +       H + A  PL     +       H+A+    G + S+F+      KV 
Sbjct: 233 HPYAEEVG-----HFVSADDPLLTDPALVDALRRTHEALRFTDGFTHSEFMLTADGPKV- 286

Query: 259 WLEIN 263
            +E+N
Sbjct: 287 -IEVN 290


>gi|27379401|ref|NP_770930.1| acetyl-CoA carboxylase biotin carboxylase subunit [Bradyrhizobium
           japonicum USDA 110]
 gi|27352552|dbj|BAC49555.1| biotin carboxylase subunit of acetyl-CoA carboxylasee
           [Bradyrhizobium japonicum USDA 110]
          Length = 452

 Score = 76.7 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 34/222 (15%), Positives = 77/222 (34%), Gaps = 22/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     IL    + +         L  DK+ +K+     G+PV P    
Sbjct: 77  AVHPGYGFLSENARFAEILSEHNLHFIGPKAEHIRLMGDKIEAKKTAKKLGIPVVPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS-----SWNHGD 164
            +  +   +     I  P ++K   GG   G+ V   +  + + L  ++     ++    
Sbjct: 137 AVGPDDDALGIARKIGFPVLVKAAAGGGGRGMKVAHSEADLLMALSTAANEAKSAFG-DA 195

Query: 165 QLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+Y+     +   ++GD                   L+          P+  +   
Sbjct: 196 SVYLEKYLQKPRHIEIQILGDGRGGAI-----HLGERDCSLQRRHQKVWEEGPSPVLSAA 250

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              ++      A + +   G+   +FLF     + +++E+N 
Sbjct: 251 ARAKIGETCAKAMREMKYLGVGTIEFLF--EDGEFYFIEMNT 290


>gi|330883008|gb|EGH17157.1| hypothetical protein Pgy4_29620 [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 316

 Score = 76.7 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 63/314 (20%), Positives = 111/314 (35%), Gaps = 51/314 (16%)

Query: 17  SSGK--ACASALEDAGFKVSQI-DVDRSVGLVLAHL----------KPDLAFNVL----- 58
            S K      A + AG ++  + D   S    L  +          +P +A         
Sbjct: 3   RSAKLSFVFEAAQAAGIELVLVYDTTESAPAQLPAVTSTWQLPVFDEPQVALEAFAAGVE 62

Query: 59  -HGNFG-----EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
             G  G     E+ ++   L    I         +AL+ DK   +Q  ++ G+       
Sbjct: 63  ERGIGGVMTVREEAIIWTALAAKRIGTPGIKPELAALTRDKYLMRQAFAAAGLRSPGFCY 122

Query: 113 V-NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP-----------LDLLQSSSW 160
           + N   +   H +  P VIKPL G SS G+++ K  + +P            DL +    
Sbjct: 123 IDNPEDLSQAHALGFPLVIKPLSGWSSTGVMLAKTVEELPNLVNAVWDVQSKDLARFYDQ 182

Query: 161 NHGDQLLIEQYVDGIELTCGVM----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216
           +    L++EQY+ G E          G   L V +   P+  ++          + +   
Sbjct: 183 DKAVGLVVEQYLPGKEFVVECFVDIEGVHVLAVGDKGQPEGPWF--------EETIYRQR 234

Query: 217 AKIPLDIYKEVQRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275
             I   +   +   A    +A+G   G +  +   D   ++ + +EI  + G + VS F 
Sbjct: 235 RDIHDPLIVSLCDAARAGVKALGISIGAAHVELRLDAQ-QQPYVIEIGARIGGSGVSHFV 293

Query: 276 EMAAYAGYSFRELL 289
                 G SF +L 
Sbjct: 294 VE-QSTGVSFAKLC 306


>gi|310789375|gb|EFQ24908.1| urea carboxylase [Glomerella graminicola M1.001]
          Length = 1241

 Score = 76.7 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 36/251 (14%), Positives = 84/251 (33%), Gaps = 21/251 (8%)

Query: 25  ALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84
           AL       +  D+  ++  V      D  F   +G   E+      +    + +     
Sbjct: 64  ALRGNK---TYTDISDAILDVCRSTGADAVFPG-YGFLSENVAFAEAVATAGLTFIGPSS 119

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILV---NRFTMDSQHLISPPYVIKPLKGGSSLGI 141
            +      K  ++ +  +  VPV P   +       ++    +  P ++KP  GG  +G+
Sbjct: 120 ASIRAMGLKHEARSIAQAVNVPVVPGTSLLSSAHEAIEGAKRLGFPVILKPTGGGGGMGL 179

Query: 142 IVIKKDQSIPLDLL----QSSSWNHGDQLLIEQ-YVDGIELTCGVMGDASLDVTEIAVPK 196
            +   +Q +P        ++ +  +   + +E+ Y     +   V G+ +       V  
Sbjct: 180 QICHDEQDVPKAFATVESRAGALLNNTGVFLEKYYPRFRHIEVQVFGNGT------QVVA 233

Query: 197 SDFYSYELKYSSLNSTHVLP---AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
                  L+          P    +    + +++ + A      +  +     +FL D  
Sbjct: 234 FGERECSLQRRHQKIIEECPSPFVERTPGLREKMLQAAVSYASHLKYKSAGTVEFLVDDE 293

Query: 254 SRKVFWLEINV 264
           +   F+LE+N 
Sbjct: 294 TADFFFLEMNT 304


>gi|296138666|ref|YP_003645909.1| pyruvate carboxylase [Tsukamurella paurometabola DSM 20162]
 gi|296026800|gb|ADG77570.1| pyruvate carboxylase [Tsukamurella paurometabola DSM 20162]
          Length = 1128

 Score = 76.7 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 38/244 (15%), Positives = 78/244 (31%), Gaps = 14/244 (5%)

Query: 29  AGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
            G  V        +         D  +   +G   E+  + A   +  I +         
Sbjct: 54  EGHPVRAYLSVEEIVRTAKRSGADAVYPG-YGFLSENPELAAACAVEGITFVGPPTEVLE 112

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFT---MDSQHLISPPYVIKPLKGGSSLGIIVIK 145
           L+ +K  +     + G+PV  S   +      + +   +  P  +K + GG   G+  + 
Sbjct: 113 LTGNKASAIAAARTAGLPVLDSSAPSADPDTLIAAAQGMQFPVFVKAVAGGGGRGMRRVN 172

Query: 146 KDQSIPLDLLQS-----SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFY 200
             + +   +  +     S++      L E  +D   +   ++ D + +V  +        
Sbjct: 173 TIEDLRDAVEIASREAESAFGDPTVFLEEAVIDPRHIEVQILADTAGNVIHLFERDCSLQ 232

Query: 201 SYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260
               K             I   + + +   A    ++IG       +FL DP  R VF  
Sbjct: 233 RRHQKMI----EMAPAPNISEALRERLCADAVNFARSIGYSCAGTVEFLVDPQGRHVFI- 287

Query: 261 EINV 264
           E+N 
Sbjct: 288 EMNP 291


>gi|222097395|ref|YP_002531452.1| pyruvate carboxylase [Bacillus cereus Q1]
 gi|229198063|ref|ZP_04324775.1| Pyruvate carboxylase [Bacillus cereus m1293]
 gi|221241453|gb|ACM14163.1| pyruvate carboxylase [Bacillus cereus Q1]
 gi|228585421|gb|EEK43527.1| Pyruvate carboxylase [Bacillus cereus m1293]
          Length = 1148

 Score = 76.7 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 31/243 (12%), Positives = 82/243 (33%), Gaps = 21/243 (8%)

Query: 35  QIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSM 91
            ID    +  ++   K +   + +H  +G   E+       E   I +         +  
Sbjct: 62  PIDAYLDIEGIIEIAKSNHV-DAIHPGYGFLSENIQFAKRCEEEGIIFIGPKSKHLDMFG 120

Query: 92  DKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147
           DK++++       +PV P     +               P +IK   GG   G+ +++  
Sbjct: 121 DKVKARTQAQLAQIPVIPGSDGPVDSLEEVEKFAEKYDYPIIIKASLGGGGRGMRIVRTS 180

Query: 148 QSIPL----DLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSY 202
           + +         ++ +    D++ +E++V+    +   ++ D   +V  +          
Sbjct: 181 EELRESYNRAKSEAKAAFGNDEVYVEKFVEKPKHIEVQILADEEGNVVHLYE-----RDC 235

Query: 203 ELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
            ++        + P   +  D+ + +   A    + +        +FL        +++E
Sbjct: 236 SVQRRHQKVVEIAPSVSLSDDLRQRICDAAVKLTKNVNYLNAGTVEFLV--KDDNFYFIE 293

Query: 262 INV 264
           +N 
Sbjct: 294 VNP 296


>gi|124514371|gb|EAY55884.1| Acetyl-CoA carboxylase, biotin carboxylase [Leptospirillum rubarum]
          Length = 456

 Score = 76.7 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 78/220 (35%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     I +   + +      + +L  DK R+K ++    VPV P    
Sbjct: 82  AIHPGYGFLSENAHFAEICQSAGVVFIGPSPESISLMGDKARAKSLMRETRVPVVPGSQG 141

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK----DQSIPLDLLQSSSWNHGDQ 165
            I      +     I  P +IK   GG   G+ ++ +    D ++     ++       +
Sbjct: 142 AISSEEEAITLSREIGYPLIIKASAGGGGRGMRIVHQEGDFDNALHAAQTEAFQAFGSKE 201

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+Y  +   +   ++ D   +V  +            K             +   + 
Sbjct: 202 VYIEKYFQNPRHVEIQILADTEGNVYALGERDCSIQRRHQK----LVEESPSPVLSPKLR 257

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +E+   A  A +A         +FL D   R  F++E+N 
Sbjct: 258 QEMSEAAVRAARAANYVNAGTVEFLVDDR-RNFFFIEMNT 296


>gi|99080579|ref|YP_612733.1| 3-methylcrotonoyl-CoA carboxylase, alpha subunit [Ruegeria sp.
           TM1040]
 gi|99036859|gb|ABF63471.1| 3-methylcrotonoyl-CoA carboxylase, alpha subunit [Ruegeria sp.
           TM1040]
          Length = 645

 Score = 76.7 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 38/206 (18%), Positives = 70/206 (33%), Gaps = 20/206 (9%)

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT----MDSQHLISPPY 128
           E   + +      A      K  +K ++   GVPV P    +             I  P 
Sbjct: 97  EAAGLAFIGPSASAIRKMGLKDAAKALMEEAGVPVVPGYHGDTQDAGFLAKQADSIGYPV 156

Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQLLIEQYV-DGIELTCGVMG 183
           +IK + GG   G+ +++  +     L  +            +LIE+Y+     +   V G
Sbjct: 157 LIKAVAGGGGKGMRLVEDPKDFNDALASAQGEATTSFGNPAVLIEKYIQKPRHIEVQVFG 216

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRG 242
           D +  V              L+          PA  +  ++   + + A  A +AIG  G
Sbjct: 217 DGTSAV------HLFERDCSLQRRHQKVIEEAPAPGMTDEMRAAMGQAAVRAAEAIGYAG 270

Query: 243 ISRSDFLFDPLSR----KVFWLEINV 264
               +F+ D          +++E+N 
Sbjct: 271 AGTVEFIVDGSEGLRADGFWFMEMNT 296


>gi|325686169|gb|EGD28219.1| carbamoyl-phosphate synthase [Lactobacillus delbrueckii subsp.
           lactis DSM 20072]
          Length = 1066

 Score = 76.7 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 56/314 (17%), Positives = 108/314 (34%), Gaps = 37/314 (11%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI---------DVD------------RSVGLV 45
           G ++E + +   G     AL + G +V  I         D D              V  +
Sbjct: 21  GQAAEFDYA---GTQACRALREEGIEVVLINSNPATIMTDGDMADHVYIEPLTVPVVKQL 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   KPD     + G    +  +    +  LE   +    +      ++ D++  K ++ 
Sbjct: 78  MEKEKPDALLPTMGGQNALNIAMALADEGFLEKHHVKTIGTDTDTIKMAEDRLEFKNLME 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G PV  S++VN     +     I  P V++P       G  +   +Q +         
Sbjct: 138 RIGEPVAKSVVVNYVEDAIAFAKEIGYPVVVRPAYTLGGTGGGIAHNEQELHEICSNGLR 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   + LIEQ + G  E+   VM D + +   I V   +       ++  +        
Sbjct: 198 LSRVTECLIEQSIAGWKEVEYEVMRDGAGN--CITVCNMENMDPVGVHTGDSIVVAPSQT 255

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278
           +    Y+ ++  A     A+  +G     F  +P S     +E+N  P ++  S     +
Sbjct: 256 LSDKDYQMLRSSALNIITALNIKGGCNVQFALNPDSFDYCVIEVN--PRVSRSS--ALAS 311

Query: 279 AYAGYSFRELLLWM 292
              GY   +L   +
Sbjct: 312 KATGYPIAKLATKI 325



 Score = 69.8 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 32/226 (14%), Positives = 86/226 (38%), Gaps = 13/226 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTMDSQHLISPPYV 129
           L  + +P   +   +   + D+ R  +++  C +       V      + + + +  P +
Sbjct: 647 LMKMGVPILGTSADSVDAAEDRERFDEILEKCQIDRPKGQTVFTAEEALKAANELGYPVL 706

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLL-QSSSWNH-GDQLLIEQYVDGIELTCGVMGDASL 187
           ++P       G+ +   D  +   +   +S +N     +LI++Y+ G E     + D   
Sbjct: 707 VRPSYVLGGAGMEIALNDGDLKRFIDHITSQFNIEDHPILIDKYLAGKECEVDAICDDEG 766

Query: 188 DVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
            +    +   +       +S  + +   P KI  ++ + +   +    +A+  +G+    
Sbjct: 767 ILIPGIMEHVERAGV---HSGDSISIYPPQKISQEMKERIVEYSKRLAKALKVKGLMNIQ 823

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           F+      KV+ +E+N +   T     P ++   G    ++   ++
Sbjct: 824 FIV--YENKVYVIEVNPRSSRT----IPYISKVTGIPLVDMATNVI 863


>gi|227823796|ref|YP_002827769.1| pyruvate carboxylase [Sinorhizobium fredii NGR234]
 gi|227342798|gb|ACP27016.1| pyruvate carboxylase [Sinorhizobium fredii NGR234]
          Length = 1151

 Score = 76.7 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 33/199 (16%), Positives = 72/199 (36%), Gaps = 15/199 (7%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-LVNRFTMDSQHL---ISPPYVIK 131
            I +            +K+ ++ +  S GVPV P+   +     +   L   I  P ++K
Sbjct: 107 GITFIGPKPETMRQLGNKVAARNLAISIGVPVVPATEPLPDDPAEIARLAEEIGYPVMLK 166

Query: 132 PLKGGSSLGIIVIKKDQSIP----LDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDAS 186
              GG   G+  I+  + +         ++ +    D++ +E+ V+    +   ++GD  
Sbjct: 167 ASWGGGGRGMRAIRDPKDLIREVTEAKREAKAAFGKDEVYLEKLVERARHVESQILGDTH 226

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISR 245
            +V  +            K          PA  +      E+   +    +A    G   
Sbjct: 227 GNVVHLFERDCSIQRRNQK-----VVERAPAPYLSEAQRAELADYSLKIAEATNYIGAGT 281

Query: 246 SDFLFDPLSRKVFWLEINV 264
            ++L D  + K +++E+N 
Sbjct: 282 VEYLMDSDTGKFYFIEVNP 300


>gi|171778241|ref|ZP_02919447.1| hypothetical protein STRINF_00287 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171282941|gb|EDT48365.1| hypothetical protein STRINF_00287 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 1059

 Score = 76.7 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 26/228 (11%), Positives = 77/228 (33%), Gaps = 19/228 (8%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYV 129
           L    +    + +     + D+   +Q +    +P  P           ++ H I  P +
Sbjct: 646 LSKAGVTILGTQVADLDRAEDRDLFEQALKELDIPQPPGQTATNEEEAVEAAHKIGFPVL 705

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS--- 186
           ++P        + +++ +  +   +  +   +    +L++ Y+ G E     + D     
Sbjct: 706 VRPSYVLGGRAMEIVENEDDLRSYMRTAVKASPDHPVLVDSYIVGRECEVDAISDGKDVL 765

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISR 245
           +      + ++  +S        +S  V P + +   + + +          + C G+  
Sbjct: 766 IPGIMEHIERAGVHS-------GDSMAVYPPQTLSKKVQETIANYTKRLAIGLNCYGMMN 818

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
             F+       V+ +E+N +   T     P ++        ++   ++
Sbjct: 819 IQFVI--KDETVYVIEVNPRASRT----VPFLSKVTNIPMAQVATKLI 860



 Score = 75.5 bits (185), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 56/297 (18%), Positives = 109/297 (36%), Gaps = 36/297 (12%)

Query: 25  ALEDAGFKVSQID---------------------VDRSVGLVLAHLKPDLAFNVLHGNFG 63
           AL++ G+ V  ++                         V  +L   +PD     L G  G
Sbjct: 36  ALKEEGYNVVLVNSNPATIMTDKEIADKVYIEPLTTEFVTRILRKERPDALLPTLGGQTG 95

Query: 64  EDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFT 117
            +  ++     IL+ L +    + + A   + D+   KQ++     P+  S +VN     
Sbjct: 96  LNMAMELSKAGILDELGVELLGTKLSAIERAEDRDLFKQLMEELNQPIPESEIVNTVDEA 155

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IE 176
           +     I  P +++P       G  +   ++ +          +   Q LIE+ + G  E
Sbjct: 156 VAFAESIGYPVIVRPAFTLGGTGGGMCDNEEELREIAENGLKLSPVTQCLIERSIAGFKE 215

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA-FLAH 235
           +   VM DA+ +   + V   + +   +   + +S    P +   DI  ++ R A     
Sbjct: 216 IEYEVMRDAADNA--LVVCNMENFD-PVGIHTGDSIVFAPTQTLSDIENQMLRNASLSII 272

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +A+   G        DP S K + +E+N  P ++  S     +   GY   +L   +
Sbjct: 273 RALKIEGGCNVQLALDPNSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAKI 325


>gi|223044369|ref|ZP_03614403.1| biotin carboxylase (Acetyl-CoA carboxylase subunit A) (ACC)
           [Staphylococcus capitis SK14]
 gi|314933772|ref|ZP_07841137.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Staphylococcus
           caprae C87]
 gi|222442238|gb|EEE48349.1| biotin carboxylase (Acetyl-CoA carboxylase subunit A) (ACC)
           [Staphylococcus capitis SK14]
 gi|313653922|gb|EFS17679.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Staphylococcus
           caprae C87]
          Length = 453

 Score = 76.7 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 83/220 (37%), Gaps = 18/220 (8%)

Query: 56  NVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
           N +H  +G   E       +E  +I +         +  DK+ ++Q V +  VPV P   
Sbjct: 75  NAIHPGYGFLSESTTFAEAVEENDIHFIGPNKKTMEMMGDKITARQTVHAANVPVIPGSD 134

Query: 113 VNRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS----WNHGD 164
               ++D        I  P V+K   GG   GI ++K+ + +   L ++ S    + + D
Sbjct: 135 GEVESVDEIKKLAEEIGYPLVLKAASGGGGKGIRIVKEPEQLEKSLKEAKSEGQKYFNDD 194

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           ++ +E ++     +   V+GD   +   +            + +         A +  + 
Sbjct: 195 RVYVEAFIPVAKHVEVQVIGDGKNNYVHLGERDCSV----QRKNQKLIEESPCAALTDER 250

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            + +   A    +A   R     +FL    +   +++E+N
Sbjct: 251 RERICNDAVKVAKASNYRSAGTIEFLVTEDAH--YFIEMN 288


>gi|149181705|ref|ZP_01860197.1| pyruvate carboxylase [Bacillus sp. SG-1]
 gi|148850553|gb|EDL64711.1| pyruvate carboxylase [Bacillus sp. SG-1]
          Length = 1146

 Score = 76.7 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 33/244 (13%), Positives = 84/244 (34%), Gaps = 23/244 (9%)

Query: 35  QIDVDRSVGLVLA-HLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALS 90
            ID    +  ++    K D+  + +H  +G   E+       E   I +         + 
Sbjct: 59  PIDAYLDIEGIIEIAKKADV--DAIHPGYGFLSENINFARRCEEEGITFIGPHSGHLDMF 116

Query: 91  MDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK- 145
            DK++++       +PV P     +      +        P +IK   GG   G+ +++ 
Sbjct: 117 GDKVKARHQAQLANIPVIPGSDGPVSGLDEVVQFGKTHGYPIIIKASLGGGGRGMRIVRG 176

Query: 146 ---KDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYS 201
                +S      ++ +    D++ +E++V+    +   ++GD   ++            
Sbjct: 177 PDQVKESYERAKSEAKAAFGNDEVYVERFVENPKHIEVQILGDQQGNII-----HLFERD 231

Query: 202 YELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260
             ++        V P   +   +  ++   A    + +        +FL      + +++
Sbjct: 232 CSVQRRHQKVVEVAPCVSLDEKLRDDICNAAVQLMKNVDYVNAGTVEFLV--ADNRFYFI 289

Query: 261 EINV 264
           E+N 
Sbjct: 290 EVNP 293


>gi|295091307|emb|CBK77414.1| carbamoyl-phosphate synthase large subunit [Clostridium cf.
           saccharolyticum K10]
          Length = 1088

 Score = 76.7 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 41/232 (17%), Positives = 84/232 (36%), Gaps = 9/232 (3%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMR 95
            +V  ++   KPD   + L G  G    +Q      LE   +    S       + D+  
Sbjct: 72  ETVKRIIEKEKPDSILSGLGGQTGLTLCMQLAHDGFLEEHGVKLLGSSPETIDRAEDRQL 131

Query: 96  SKQVVSSCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153
            K  + S G P  PS +VN     ++    I  P +++P       G  +   ++ +   
Sbjct: 132 FKDAMESIGQPCVPSKVVNETEDALEFAKTIGYPVIVRPAFTLGGTGGGIADSEEELREI 191

Query: 154 LLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212
                + +   Q+L+E+ + G  E+   V+ D + +   I V   + +     ++  +  
Sbjct: 192 ARNGLALSPIHQILVEKGISGWKEIEFEVIRDRAGN--CITVCSMENFDPVGIHTGDSIV 249

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
                 +    Y+ ++  A      +   G     F  +P S +   +E+N 
Sbjct: 250 IAPAVTLADREYQMLRSAALRIVDTLQVEGGCNCQFALNPESFEYAVIEVNP 301



 Score = 72.8 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 30/219 (13%), Positives = 81/219 (36%), Gaps = 19/219 (8%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYVIKPL 133
            +P   +   +  ++ D+ R  +++    +       V        +   +  P +++P 
Sbjct: 650 GVPVIGTCADSIDMAEDRERFDELLDRLHIAKPKGHTVMTEEEAIRAAESVGYPVLMRPS 709

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS---LDVT 190
                  +I+   +  I   +    + N  + +LI++Y++G E+    + D +   L   
Sbjct: 710 YVLGGQNMIIAFDEADIREYMKIILAQNIENPVLIDKYLEGTEIEVDAIYDGTDILLPGI 769

Query: 191 EIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
              V +S  +S        +S  + PA  +  +  +++        + +   GI    ++
Sbjct: 770 MEHVERSGIHS-------GDSIAIYPAMHLTPETEEKIAETTKKLCEGLNAVGIVNVQYI 822

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
                 +++ +E+N +   T     P ++   G    +L
Sbjct: 823 V--ADGEIYIIEVNPRASRT----VPYLSKVTGVPMVDL 855


>gi|255318753|ref|ZP_05359979.1| methylcrotonoyl-CoA carboxylase subunit alpha [Acinetobacter
           radioresistens SK82]
 gi|255304009|gb|EET83200.1| methylcrotonoyl-CoA carboxylase subunit alpha [Acinetobacter
           radioresistens SK82]
          Length = 663

 Score = 76.7 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 79/221 (35%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       +   I +    + A      K  SK ++   GVP+ P    
Sbjct: 77  AVHPGYGFLSENDDFALACQQNGIEFIGPPVEAIRAMGLKATSKALMEKAGVPLTPGYHG 136

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGDQ 165
                +        I  P +IK   GG   G+ ++++ +     L     ++ S    + 
Sbjct: 137 KNQEPNFLKQQADAIGYPVLIKASAGGGGKGMRLVERSEDFLSSLTSCKSEARSSFGNED 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDI 223
           +LIE+YV     +   V GD   +               ++          PA + P + 
Sbjct: 197 VLIERYVTRPRHIEVQVFGDKHGNYV-----HLFERDCSVQRRHQKVLEEAPAPLMPEEK 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +++ A  A +A+   G    +F+        +++E+N 
Sbjct: 252 LEAMRQAAIDAARAVNYVGAGTVEFIV-EQDGTAYFMEMNT 291


>gi|254584038|ref|XP_002497587.1| ZYRO0F08976p [Zygosaccharomyces rouxii]
 gi|238940480|emb|CAR28654.1| ZYRO0F08976p [Zygosaccharomyces rouxii]
          Length = 1833

 Score = 76.7 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 28/213 (13%), Positives = 69/213 (32%), Gaps = 12/213 (5%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS---ILVNR 115
           +G   E+        +  I +      A      K  ++++ +  GVP+ P    +    
Sbjct: 710 YGFLSENADFSDRCAVEGIVFVGPTGDAIRKLGLKHSAREIAAKAGVPLVPGSPLVTSPS 769

Query: 116 FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQLLIEQY 171
                   +  P ++K   GG  +G+  +  +  I         Q  S+     + +E++
Sbjct: 770 DAKKIAAELEYPIMVKSTAGGGGIGLQKVDSEDQIERVFETVQHQGKSFFGDSGVFLERF 829

Query: 172 VD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
           V+    +   +MGD       +            K             +       +++ 
Sbjct: 830 VENARHVEIQMMGDGYGKAIALGERDCSLQRRNQK----VVEETPAPNLSDSTRARMRKA 885

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
           +      +  +     +F++D    + ++LE+N
Sbjct: 886 SENLGSLLKYKCAGTVEFIYDEKRDEFYFLEVN 918


>gi|228985655|ref|ZP_04145808.1| Biotin carboxylase [Bacillus thuringiensis serovar tochigiensis
           BGSC 4Y1]
 gi|228774050|gb|EEM22463.1| Biotin carboxylase [Bacillus thuringiensis serovar tochigiensis
           BGSC 4Y1]
          Length = 445

 Score = 76.7 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 80/220 (36%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       +   I +             K+ S+  + +  VPV P I  
Sbjct: 77  AIHPGYGLLSENPSFPVRCKEEGIVFIGPSEEIITKMGSKIESRIAMQAADVPVVPGITT 136

Query: 114 N----RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
           N       ++    I  P ++K   GG  +G+ +++ +Q++         ++ ++    +
Sbjct: 137 NIETAEEAIEIAKQIGYPLMLKASAGGGGIGMQLMETEQTLTKAFESNKTRAQNFFGNGE 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+Y+ D   +   ++ D   +   +   +        K             +     
Sbjct: 197 MYLERYIADAHHIEIQLLADTHGNTVYLWERECSVQRRNQK----VIEEAPSPFLDEGTR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K +  +A  A +A+G       +FL D      ++LE+N 
Sbjct: 253 KAMGEVAVQAAKALGYTNAGTVEFLVDDQKN-FYFLEMNT 291


>gi|183601881|ref|ZP_02963250.1| JadJ [Bifidobacterium animalis subsp. lactis HN019]
 gi|219682795|ref|YP_002469178.1| JadJ [Bifidobacterium animalis subsp. lactis AD011]
 gi|241190371|ref|YP_002967765.1| JadJ [Bifidobacterium animalis subsp. lactis Bl-04]
 gi|241195777|ref|YP_002969332.1| JadJ [Bifidobacterium animalis subsp. lactis DSM 10140]
 gi|183218766|gb|EDT89408.1| JadJ [Bifidobacterium animalis subsp. lactis HN019]
 gi|219620445|gb|ACL28602.1| JadJ [Bifidobacterium animalis subsp. lactis AD011]
 gi|240248763|gb|ACS45703.1| JadJ [Bifidobacterium animalis subsp. lactis Bl-04]
 gi|240250331|gb|ACS47270.1| JadJ [Bifidobacterium animalis subsp. lactis DSM 10140]
 gi|289178094|gb|ADC85340.1| Acetyl-/propionyl-coenzyme A carboxylase alpha chain
           [Bifidobacterium animalis subsp. lactis BB-12]
 gi|295793358|gb|ADG32893.1| JadJ [Bifidobacterium animalis subsp. lactis V9]
          Length = 624

 Score = 76.7 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 41/233 (17%), Positives = 83/233 (35%), Gaps = 19/233 (8%)

Query: 42  VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILEL---LEIPYTHSGILASALSMDKMRSKQ 98
           +  +L     D      H  +G    V +  +        +      A     DK+ +++
Sbjct: 69  LIDILRRSGADAV----HPGYGFLSEVPSFADKVIEAGATWVGPSSRALTDLGDKISARR 124

Query: 99  VVSSCGVPVCPSILVN----RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154
           V     VP  P I  +    R  +D  H    P ++K   GG   GI +++ D  +    
Sbjct: 125 VAVYAKVPPVPGISHSLGDMRVLLDFAHTHGYPLMLKRADGGGGRGITLVRDDDELRGFY 184

Query: 155 LQSSSWNHG--DQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
           L  ++   G  D+  +E+++D G  +      D+  + T  +           K      
Sbjct: 185 LNHNAVQGGDLDEYFVERFIDHGRHVETQCGRDSHGNFTVYSTRDCSVQRRNQK----LI 240

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
                  +  D+ +++   +     A+   G+   +F+      KV++LE+N 
Sbjct: 241 EEAPAPFLGDDVVEQLHAYSHRLFDAVDYVGLGTCEFMVTDA-GKVYFLEVNP 292


>gi|110800466|ref|YP_697261.1| carbamoyl phosphate synthase large subunit [Clostridium perfringens
           ATCC 13124]
 gi|168209813|ref|ZP_02635438.1| carbamoyl-phosphate synthase, large subunit [Clostridium
           perfringens B str. ATCC 3626]
 gi|122958642|sp|Q0TM79|CARB_CLOP1 RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|110675113|gb|ABG84100.1| carbamoyl-phosphate synthase, large subunit [Clostridium
           perfringens ATCC 13124]
 gi|170712157|gb|EDT24339.1| carbamoyl-phosphate synthase, large subunit [Clostridium
           perfringens B str. ATCC 3626]
          Length = 1067

 Score = 76.7 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 38/261 (14%), Positives = 95/261 (36%), Gaps = 21/261 (8%)

Query: 38  VDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSK 97
            +  V  ++   KPD       G       +   L+   IP   +      L+ D+ +  
Sbjct: 617 TEEDVLNIIDKEKPDGVILQFGGQTA--IKLAKFLKEKNIPTLGTTSDQIDLAEDREQFD 674

Query: 98  QVVSSCGV--PVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
            ++    +  P    +      ++    +  P +++P       G+ +   ++ +   L 
Sbjct: 675 DLLERLNIARPKGKGVWSLEEGLEEARRLGFPILVRPSFVLGGQGMEITHDEEELTYYLT 734

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDAS---LDVTEIAVPKSDFYSYELKYSSLNST 212
            +   +  + +LI++Y+ G E+    + D     +      + ++  +S        +S 
Sbjct: 735 NAFEKDSKNPILIDKYLMGREIEVDAISDGEDVLVPGIMEHLERAGVHS-------GDSI 787

Query: 213 HVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271
            + PA  I   I ++V         +IG +G+    F+      K++ +E+N +   T  
Sbjct: 788 TMYPAQNISDKIKEDVLDYTKKLALSIGIKGMINIQFI--EFEGKLYVIEVNPRASRT-- 843

Query: 272 SIFPEMAAYAGYSFRELLLWM 292
              P ++  +G    ++   +
Sbjct: 844 --VPYISKVSGVPIVDIATRI 862



 Score = 62.1 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 51/290 (17%), Positives = 106/290 (36%), Gaps = 41/290 (14%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQID-------VDRSVGL--------------V 45
           G ++E + S   G     AL++ G +V  ++        D+ +                V
Sbjct: 21  GQAAEFDYS---GTQACQALKEEGIEVVLVNSNPATIMTDKEIADKVYLEPLTVEFVEKV 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGL-------VQAILELLEIPYTHSGILASALSMDKMRSKQ 98
           +   +PD   ++L G  G+ GL        + IL+   +    + I +     D+   + 
Sbjct: 78  IEKERPD---SLLAGMGGQTGLNLAVELYEKGILDKYNVKVIGTSIESIKEGEDRELFRD 134

Query: 99  VVSSCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
           +++    PV  S ++      +     I  P +++P       G  +   ++ +   L  
Sbjct: 135 MMNRINQPVIQSEIITDLDAGIAFARKIGYPVIVRPAYTLGGTGGGIANNEEELIETLTS 194

Query: 157 SSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215
               +   Q+L+E+ V G  E+   VM D            +      +   + +S  V 
Sbjct: 195 GLQLSTIGQVLLEKSVKGWKEIEYEVMRD---SFGNCITVCNMENIDPVGIHTGDSIVVA 251

Query: 216 PAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           P++ +    Y+ ++  +     A+G  G     F  +P S +   +EIN 
Sbjct: 252 PSQTLSDKEYQMLRSASIDIINAVGIEGGCNVQFALNPHSFEYAVIEINP 301


>gi|254244254|ref|ZP_04937576.1| biotin carboxylase [Pseudomonas aeruginosa 2192]
 gi|126197632|gb|EAZ61695.1| biotin carboxylase [Pseudomonas aeruginosa 2192]
          Length = 449

 Score = 76.7 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 75/222 (33%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         L  DK+ +K  +   GVP  PS   
Sbjct: 77  AIHPGYGFLAENADFAEQIERSGFTFVGPTAEVIRLMGDKVSAKDAMKRAGVPTVPSSDG 136

Query: 112 LVNRFTMDS---QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGD 164
            +      +      +  P +IK   GG   G+ V+  +  +         ++ +     
Sbjct: 137 PLPEDEETALAIAREVGYPVIIKAAGGGGGRGMRVVYDESELIKSAKLTRTEAGAAFGNP 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+++     +   V+ D   +               L+          PA  I   
Sbjct: 197 MVYLEKFLTNPRHVEVQVLSDGQGNAI-----HLGDRDCSLQRRHQKVIEEAPAPGIDEK 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +EV      A   IG RG    +FL+   + + +++E+N 
Sbjct: 252 ARQEVFARCVQACIEIGYRGAGTFEFLY--ENGRFYFIEMNT 291


>gi|315084349|gb|EFT56325.1| phosphoribosylglycinamide synthetase, ATP-grasp domain protein
           [Propionibacterium acnes HL027PA2]
          Length = 478

 Score = 76.7 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 32/233 (13%), Positives = 87/233 (37%), Gaps = 15/233 (6%)

Query: 68  VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ--HLIS 125
           +   L    +P   + +     + D+   + +++  G+P  P                + 
Sbjct: 52  LAGPLSAAGVPILGTQVADLDRAEDREGFESLLAELGIPQAPGGTARSSEEAFAVAEELG 111

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            P +++P        + ++   + +   +  +   +    +L+++Y++G+E     + D 
Sbjct: 112 YPVLVRPSYVIGGRAMAIVTSAEELKRYMRDAVHASPDKPVLVDRYLNGLECEVDAICDG 171

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGIS 244
               T++ +P    +       S +S  V P  ++   +   +  +     + +  +GI 
Sbjct: 172 ----TDVLIPGIMEHIERAGVHSGDSMAVYPPQRMSQHVADRIIEVTTKLARGLKTKGIL 227

Query: 245 RSDFLF--DPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
              F+   DP + +  V+ +E N +   T     P ++   G S  E+   ++
Sbjct: 228 NIQFVVANDPATGEETVYVIEANPRASRT----VPFLSKVTGVSMAEVATRII 276


>gi|313818526|gb|EFS56240.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium
           acnes HL046PA2]
          Length = 1068

 Score = 76.7 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 43/297 (14%), Positives = 106/297 (35%), Gaps = 36/297 (12%)

Query: 24  SALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLV------ 68
            A++ AG++   +         D   S  L    L  +   NV+      DG++      
Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSISDKLYFEPLTFEDVMNVVD-LEQPDGVIVQFGGQ 637

Query: 69  -----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ-- 121
                   L    +P   + +     + D+   + +++  G+P  P              
Sbjct: 638 TAINLAGPLSAAGVPILGTQVADLDRAEDREGFESLLAELGIPQAPGGTARSSEEAFAVA 697

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
             +  P +++P        + ++   + +   +  +   +    +L+++Y++G+E     
Sbjct: 698 EELGYPVLVRPSYVIGGRAMAIVTSAEELKRYMRDAVHASPDKPVLVDRYLNGLECEVDA 757

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGC 240
           + D     T++ +P    +       S +S  V P  ++   +   +  +     + +  
Sbjct: 758 ICDG----TDVLIPGIMEHIERAGVHSGDSMAVSPPQRMSQHVADRIIEVTTKLARGLKT 813

Query: 241 RGISRSDFLF--DPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +GI    F+   DP + +  V+ +E N +   T     P ++   G S  E+   ++
Sbjct: 814 KGILNIQFVVANDPATGEETVYVIEANPRASRT----VPFLSKVTGVSMAEVATRII 866



 Score = 72.5 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 46/268 (17%), Positives = 99/268 (36%), Gaps = 30/268 (11%)

Query: 25  ALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNVLHGNFG 63
           AL++ G++V  ++        DR V                +L   +PD     L G  G
Sbjct: 36  ALKEEGYEVILVNSNPATIMTDRDVADKVYIEPITLEFVSSILRRERPDAIVPTLGGQTG 95

Query: 64  EDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
            +   +     IL+ L I    +   A   + D+   KQ++   G PV  S +V+     
Sbjct: 96  LNMATELAKSGILDELGIELLGTKPSAIEKAEDRDLFKQLMDELGQPVPASEVVHTVDEA 155

Query: 120 SQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IE 176
            +  + I  P +++P       G  +   +  +   + +    +   + LIEQ + G  E
Sbjct: 156 VKVGNTIGYPLIVRPAYTLGGTGGGMCCDEAELVRIVGKGLELSPVTECLIEQSIAGFKE 215

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +   +M D + +   + V   + +     ++  +        +    ++ ++  +    +
Sbjct: 216 IEYEMMRDGADNT--MVVCTMENFDPVGVHTGDSIVFAPTQTLTDVEHEMLRDASIEIVR 273

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +G  G        DP S + + +E+N 
Sbjct: 274 TLGIEGGCNVQLALDPNSFQYYVIEVNP 301


>gi|302036566|ref|YP_003796888.1| pyruvate carboxylase subunit A [Candidatus Nitrospira defluvii]
 gi|300604630|emb|CBK40962.1| Pyruvate carboxylase, subunit A [Candidatus Nitrospira defluvii]
          Length = 472

 Score = 76.7 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 84/220 (38%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---- 109
            +H  +G   E+     + +   I +         L   K++++Q+    GVP+ P    
Sbjct: 76  AIHPGYGFLSENTKFARLCQTSGITFIGPSPETIDLMGSKVKARQIAQQAGVPIVPGTEG 135

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
            +      +   H I+ P +IK   GG   G+ V++ DQ +  ++     ++ +      
Sbjct: 136 GVTSVDDALAFAHQINYPVMIKASAGGGGRGLRVVRSDQELRENIDVASREAQAAFGDGS 195

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+Y++    +   ++GD   ++  +            K   +  + +    +   + 
Sbjct: 196 IFIEKYIERPHHIEFQILGDKHGNIIHLGERDCSIQRRHQKLIEIAPSLI----LTPKLR 251

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            ++   A    +A+        +FL D      +++E+N 
Sbjct: 252 AQMGEAAIAIAKAVHYDNAGTVEFLLD-HEGHFYFMEMNP 290


>gi|314933311|ref|ZP_07840676.1| pyruvate carboxylase [Staphylococcus caprae C87]
 gi|313653461|gb|EFS17218.1| pyruvate carboxylase [Staphylococcus caprae C87]
          Length = 1153

 Score = 76.7 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 34/221 (15%), Positives = 77/221 (34%), Gaps = 20/221 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+           I +    +    +  DK++++       +PV P    
Sbjct: 84  AIHPGYGFLSENEQFARRCAEENIKFIGPHLEHLDMFGDKVKARTTAIKADLPVIPGTDG 143

Query: 112 LVNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
            +  F    Q       P +IK   GG   G+ +++++  +     ++ S         +
Sbjct: 144 PIESFEAAKQFAQEAGFPLMIKATSGGGGKGMRIVREESELEDAFHRAKSEAEKSFGNSE 203

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDI 223
           + IE+Y+D    +   V+GD   ++  +           ++        V P   +   +
Sbjct: 204 VYIERYIDNPKHIEVQVIGDELGNIIHLYE-----RDCSVQRRHQKVVEVAPSVGLSNSL 258

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +   A    + I        +FL      + F++E+N 
Sbjct: 259 RERICEAAIQLMENIKYVNAGTVEFLV--SGDEFFFIEVNP 297


>gi|15615188|ref|NP_243491.1| pyruvate carboxylase [Bacillus halodurans C-125]
 gi|10175246|dbj|BAB06344.1| pyruvate carboxylase [Bacillus halodurans C-125]
          Length = 1150

 Score = 76.7 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 28/221 (12%), Positives = 78/221 (35%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+           I +    +    +  DK+++++      +PV P    
Sbjct: 83  AIHPGYGFLSENIEFAKRCHEEGIIFIGPELEHLVMFGDKVQAREQAIKANLPVIPGSDG 142

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD----QSIPLDLLQSSSWNHGDQ 165
            +               P++IK   GG   G+ +++ +    +S      ++ +    D+
Sbjct: 143 PVSSLEDVKAFADKHGYPFIIKAALGGGGRGMRIVRSENDVQESYERAKSEAKAAFGNDE 202

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDI 223
           + +E++++    +   ++ D   +   +           ++        V P   +  D+
Sbjct: 203 VYVEKFIENPKHIEVQILADKHGNTLHLYE-----RDCSVQRRHQKVVEVAPSVSLSEDV 257

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + + + A    + +        +FL D      +++E+N 
Sbjct: 258 RERICQAAVQLAENVNYVNAGTVEFLVDREGN-FYFIEVNP 297


>gi|282865014|ref|ZP_06274067.1| Carbamoyl-phosphate synthase L chain ATP-binding [Streptomyces sp.
           ACTE]
 gi|282559937|gb|EFB65486.1| Carbamoyl-phosphate synthase L chain ATP-binding [Streptomyces sp.
           ACTE]
          Length = 682

 Score = 76.7 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 41/221 (18%), Positives = 83/221 (37%), Gaps = 17/221 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---- 109
            +H  +G   E+           + +      A AL  DK+R+K+ V++ GVPV P    
Sbjct: 77  AVHPGYGFLAENAHFAQACADAGLVFIGPPASAIALMGDKIRAKETVAAAGVPVVPGSSG 136

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
           S L +     S   I  P ++KP  GG   G+ +++++  +  ++  +          D 
Sbjct: 137 SGLTDAQLAGSAREIGMPVLLKPSAGGGGKGMRLVREEALLAEEIAAARREARASFGDDT 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           LL+E+++D    +   ++ D    V  +   +        K             +     
Sbjct: 197 LLVERWIDRPRHIEIQILADGHGRVVHLGERECSLQRRHQKII----EEAPSVLLDEGTR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLS-RKVFWLEINV 264
             +   A  A ++ G  G    +F+         +++E+N 
Sbjct: 253 AAMGEAAVQAARSCGYVGAGTVEFIVPGDDPSSYYFMEMNT 293


>gi|52842056|ref|YP_095855.1| acyl CoA carboxylase subunit alpha subunit [Legionella pneumophila
           subsp. pneumophila str. Philadelphia 1]
 gi|52629167|gb|AAU27908.1| acyl CoA carboxylase subunit alpha subunit [Legionella pneumophila
           subsp. pneumophila str. Philadelphia 1]
          Length = 677

 Score = 76.7 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 75/220 (34%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       E   I +    I A      K  +KQ++    VP+ P    
Sbjct: 100 AIHPGYGFLSENPDFAKACEQAGIVFIGPSIKAMEAMASKQLAKQLLEKTKVPLTPGYHG 159

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
              + +        I  P +IK   GG   G+  +  ++     L  +   +      D 
Sbjct: 160 VEQSEEKLLSEAKKIGFPVLIKAANGGGGKGMRAVHDEKEFHDALAGAKRESMASFADDT 219

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           ++IE+ V +   +   +M D   +V  +            K             +   + 
Sbjct: 220 MIIERLVLNPRHVEVQIMADNHGNVVNLFERDCSIQRRHQKII----EEAPAPNLLPVLR 275

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +   A    ++I  RG    +FL D    K +++E+N 
Sbjct: 276 QRLAEAACEVARSINYRGAGTVEFLVDGED-KFYFMEMNT 314


>gi|283850385|ref|ZP_06367674.1| carbamoyl-phosphate synthase, large subunit [Desulfovibrio sp.
           FW1012B]
 gi|283574411|gb|EFC22382.1| carbamoyl-phosphate synthase, large subunit [Desulfovibrio sp.
           FW1012B]
          Length = 1078

 Score = 76.7 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 49/278 (17%), Positives = 102/278 (36%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG   A AL++ G++V  +         D               +V  ++A  KPD    
Sbjct: 29  SGSQAAKALKEEGYEVVLVNSNPATIMTDPGLADRTYIEPIEPGTVARIIAREKPDAILP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G  G +  V      +L    +    + +     +  +   ++ + + G+ V  S +
Sbjct: 89  TLGGQTGLNTAVALAESGVLAAHGVELIGASLDVIKKAESRDLFRKAMENIGLKVPKSGI 148

Query: 113 VNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +      +    I+ P +++P       G  V    + +        + +   ++++EQ
Sbjct: 149 CHTMDDVREWGRKIAFPIIVRPAFTLGGTGGGVAYNMEDLEKISSVGLAASMKSEIMLEQ 208

Query: 171 YVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            V G  E    VM D + + V   ++   D           +S  V P + +  D Y+++
Sbjct: 209 SVLGWKEFELEVMRDRADNCVIICSIENIDPMGVHT----GDSATVAPIQTLTDDEYQKM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P   ++  +E+N 
Sbjct: 265 RNASIAIMREIGVETGGSNVQFAVNPADGEMVIIEMNP 302



 Score = 59.8 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 47/292 (16%), Positives = 101/292 (34%), Gaps = 33/292 (11%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLV-----QA 70
           AL + G +   +         D D S  L    L  +   N+L     E G++     Q 
Sbjct: 592 ALREMGVESIMVNSNPETVSTDYDTSDRLYFEPLTFEDVLNILESEKPE-GVIVQFGGQT 650

Query: 71  ILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQH 122
            L L        +    +   +   + D+ R + ++   G+    +          +   
Sbjct: 651 PLNLAVPLLKAGVRILGTSPDSIDRAEDRERFQAMLHKLGLRQPANGTAFAVEEACEIAD 710

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P V++P        + ++   + +      +   +    +L+++++        V 
Sbjct: 711 KIGYPVVVRPSYVLGGRAMEIVYDRKDLENYFKYAVVASGKHPILVDKFLVN---AIEVD 767

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCR 241
            DA  D T+  V     +  E    S +S  VLP   +  ++ +E++R      + +G  
Sbjct: 768 VDAVSDGTDTYVAGVMEHIEEAGIHSGDSACVLPPHSLSPELIREIERQTVALAEELGVI 827

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           G+    F        ++ LE+N +   T     P ++   G    +L   ++
Sbjct: 828 GLMNIQFAV--KDGDIYILEVNPRASRTS----PFVSKATGVPLAKLATNVI 873


>gi|81428433|ref|YP_395433.1| Acetyl-CoA carboxylase (biotin carbooxylase subunit) [Lactobacillus
           sakei subsp. sakei 23K]
 gi|78610075|emb|CAI55124.1| Acetyl-CoA carboxylase (biotin carbooxylase subunit) [Lactobacillus
           sakei subsp. sakei 23K]
          Length = 448

 Score = 76.7 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 73/220 (33%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     + E   + +        A   DK ++K  + +  VP+ P    
Sbjct: 77  AIHPGYGFLSENSQFAEMCEACGVTFIGPSSQVIAQMGDKSQAKTSMKAAAVPLIPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI-----PLDLLQSSSWNHGD 164
            +            +  P +IK + GG   GI  +  +  +        L  + ++ +  
Sbjct: 137 PLKSLADAKIVAAKVGYPVMIKAVAGGGGKGIRFVDDESQLADSYAQAQLEAAGAFGNDQ 196

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             L +  +D   +   +  D   +             ++ K           A +  D  
Sbjct: 197 LYLEKIMLDVKHIEVQIFRDHFGNAVYFPERDCSMQRFKQK----VIEETPSALLTPDER 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            E+  +A  A + I        +FL D    + ++LE+N 
Sbjct: 253 AELGAIALKAAEQINYENTGTVEFLMD-QDHQFYFLEMNT 291


>gi|51246948|ref|YP_066832.1| carbamoyl-phosphate synthase, large subunit [Desulfotalea
           psychrophila LSv54]
 gi|50877985|emb|CAG37825.1| probable carbamoyl-phosphate synthase, large subunit [Desulfotalea
           psychrophila LSv54]
          Length = 1073

 Score = 76.7 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 51/277 (18%), Positives = 103/277 (37%), Gaps = 33/277 (11%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G++V  I         D +              V  V+A  +PD    
Sbjct: 29  SGAQAVKALKEEGYEVILINSNPATIMTDPELADATYIEPITPECVTKVIAKERPDALLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G    +  ++     +LE   +    + I     +  +   +  + + G+ V  S +
Sbjct: 89  TLGGQTALNTAIKLAELGVLEQYNVELLAADIAVIKKAEGREEFRDAMHAIGLNVPESAI 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           V+     M +   I  P +++P       G  +    Q +          +   ++++E+
Sbjct: 149 VHDLESAMAAGEDIGFPIIVRPSFTLGGTGGGIAYNRQELEELCTSGLDLSMTTEIMVER 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQ 228
            + G  E    VM D + +V  I   ++      +   + +S  V PA+ +    Y+E++
Sbjct: 209 SLLGWKEFELEVMRDKNDNVVIICSIEN---IDAMGVHTGDSITVAPAQTLTDREYQEMR 265

Query: 229 RLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
             A    + IG   G S   F  +P   ++  +E+N 
Sbjct: 266 DAAVAIIREIGVETGGSNVQFAVNPADGELMIIEMNP 302



 Score = 61.3 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 43/229 (18%), Positives = 93/229 (40%), Gaps = 14/229 (6%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           LE   I    +   A   + D+ R +Q +   G+    +  V+     + S + I  P V
Sbjct: 653 LENAGIRIIGTQPDAIDRAEDRKRFQQFLQKLGLRQPENDTVSTLEEALASANRIGYPVV 712

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  DQ I   ++     N    +L+++++ + IE+    + D    
Sbjct: 713 VRPSYVLGGRNMRIVYTDQGIRDFMIAVGGTNLEHPILVDKFLQEAIEVDVDALCDGEDT 772

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           +    +   +    E    S +S+ VLP   + L++ KE++  +    + +G  G+    
Sbjct: 773 IIGGIMEHIE----EAGIHSGDSSCVLPPHTLSLELVKEIKAASKAMAKELGVIGLMNVQ 828

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           F      ++V+ LE+N +   T     P ++   G    +L   ++  A
Sbjct: 829 FAI--KDKQVYILEVNPRASRT----VPFVSKATGVPLAKLATKVMMGA 871


>gi|85716167|ref|ZP_01047142.1| acetyl-CoA carboxylase [Nitrobacter sp. Nb-311A]
 gi|85697000|gb|EAQ34883.1| acetyl-CoA carboxylase [Nitrobacter sp. Nb-311A]
          Length = 451

 Score = 76.7 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 82/220 (37%), Gaps = 18/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     IL    + +         L  DK+ +K+     G+PV P    
Sbjct: 77  AVHPGYGFLSENARFAEILADHRLHFIGPKAEHIRLMGDKIEAKKTAKRLGIPVVPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
            I  +   M     I  P ++K   GG   G+ ++K    + + +     ++ +      
Sbjct: 137 GIGPDDDAMAIAKAIGFPVLVKAAAGGGGRGMKIVKTADDLTMAISTAGNEARAAFGDAS 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+Y+     +   V+GD    V  +        S + ++  +      PA +     
Sbjct: 197 VYLEKYLQKPRHIEIQVLGDGRGGVIHLGERD---CSLQRRHQKVWEEGPSPA-LTAAAR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            ++  +   A   I  RG    +FL+     + +++E+N 
Sbjct: 253 NKIGEIVAKAMSEIRYRGAGTVEFLY--EDGRFYFIEMNT 290


>gi|329727570|gb|EGG64026.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Staphylococcus
           aureus subsp. aureus 21172]
          Length = 451

 Score = 76.7 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 34/216 (15%), Positives = 83/216 (38%), Gaps = 15/216 (6%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-SILVNRFT 117
           +G   E+     + E  ++ +      +      K  +K  +    VPV P S  + +  
Sbjct: 81  YGFLAENADFAELCEACQLKFIGPSYQSIQKMGIKDVAKAEMIKANVPVVPGSDGLMKDV 140

Query: 118 MDSQHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS-----SWNHGDQLLIE 169
            +++ +   I  P +IK   GG   GI V + ++ +      +      ++ +G  L +E
Sbjct: 141 SEAKKIAKKIGYPVIIKATAGGGGKGIRVARDEKELETGFRMTEQEAQTAFGNGG-LYME 199

Query: 170 QYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           ++++    +   ++GD+  +V  +            +             +  +  +E+ 
Sbjct: 200 KFIENFRHIEIQIVGDSYGNVIHLGERDCTI----QRRMQKLVEEAPSPILDDETRREMG 255

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             A  A +A+        +F++D    K +++E+N 
Sbjct: 256 NAAVRAAKAVNYENAGTIEFIYDLNDNKFYFMEMNT 291


>gi|282916797|ref|ZP_06324555.1| acetyl-CoA carboxylase, biotin carboxylase [Staphylococcus aureus
           subsp. aureus D139]
 gi|283770603|ref|ZP_06343495.1| accC acetyl-CoA carboxylase biotin carboxylase subunit
           [Staphylococcus aureus subsp. aureus H19]
 gi|282319284|gb|EFB49636.1| acetyl-CoA carboxylase, biotin carboxylase [Staphylococcus aureus
           subsp. aureus D139]
 gi|283460750|gb|EFC07840.1| accC acetyl-CoA carboxylase biotin carboxylase subunit
           [Staphylococcus aureus subsp. aureus H19]
 gi|323440424|gb|EGA98136.1| acetyl-CoA carboxylase biotin carboxylase subunit [Staphylococcus
           aureus O11]
 gi|323443198|gb|EGB00816.1| acetyl-CoA carboxylase biotin carboxylase subunit [Staphylococcus
           aureus O46]
          Length = 451

 Score = 76.7 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 34/216 (15%), Positives = 83/216 (38%), Gaps = 15/216 (6%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-SILVNRFT 117
           +G   E+     + E  ++ +      +      K  +K  +    VPV P S  + +  
Sbjct: 81  YGFLAENADFAELCEACQLKFIGPSYQSIQKMGIKDVAKAEMIKANVPVVPGSDGLMKDV 140

Query: 118 MDSQHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS-----SWNHGDQLLIE 169
            +++ +   I  P +IK   GG   GI V + ++ +      +      ++ +G  L +E
Sbjct: 141 SEAKKIAKKIGYPVIIKATAGGGGKGIRVARDEKELETGFRMTEQEAQTAFGNGG-LYME 199

Query: 170 QYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           ++++    +   ++GD+  +V  +            +             +  +  +E+ 
Sbjct: 200 KFIENFRHIEIQIVGDSYGNVIHLGERDCTI----QRRMQKLVEEAPSPILDDETRREMG 255

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             A  A +A+        +F++D    K +++E+N 
Sbjct: 256 NAAVRAAKAVNYENAGTIEFIYDLNDNKFYFMEMNT 291


>gi|171910477|ref|ZP_02925947.1| acetyl-CoA carboxylase, biotin carboxylase [Verrucomicrobium
           spinosum DSM 4136]
          Length = 453

 Score = 76.7 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 73/220 (33%), Gaps = 16/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E      I +  +I +        ++  DK  ++      GVP+ P    
Sbjct: 77  AIHPGYGFLSEKAEFAEICQRCKIKFIGPSPEVISMMGDKNTARATARRLGVPITPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQ----SIPLDLLQSSSWNHGDQ 165
            I       +    I  P +IK   GG   G+  +  +     S     +++        
Sbjct: 137 IIETEEQAFEIARRIGYPVMIKASAGGGGRGMRPVLNEATLRSSFQQASMEALKCFGDGS 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+ V+    +   V+ D+  +V  +            K            KI  +I 
Sbjct: 197 VYMEKLVERPHHIEFQVVADSHGNVVHLGERDCSMQRRNQKII----EECPSPKISDEIR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +        + IG       ++L D   +  +++E+N 
Sbjct: 253 QAMGEATVKLCKEIGYENCGTIEYLVDNEGKNFYFMEMNT 292


>gi|159480080|ref|XP_001698114.1| methylcrotonoyl-CoA carboxylase alpha subunit [Chlamydomonas
           reinhardtii]
 gi|158273913|gb|EDO99699.1| methylcrotonoyl-CoA carboxylase alpha subunit [Chlamydomonas
           reinhardtii]
          Length = 764

 Score = 76.7 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 33/198 (16%), Positives = 77/198 (38%), Gaps = 17/198 (8%)

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD----SQHLISPPYVIKPLK 134
           +      A     +K R+K+++ + GVPV P    +  + +        +  P ++K + 
Sbjct: 164 FVGPPAEAIRAMGNKSRAKEIMQAAGVPVVPGYHGDDQSEERLVAEAGRVGYPLLVKAVS 223

Query: 135 GGSSLGIIVIKKDQSIPLDL----LQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDV 189
           GG   G+ +      +   +     ++ +    D+LL+E+Y+     +   V  D     
Sbjct: 224 GGGGKGMKLATGPHDLWEAITSARREALASFSDDRLLLERYIQRPRHVEVQVFADGHGGA 283

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
             +           ++          PA  +P + ++ +   A  A +A+G R     +F
Sbjct: 284 VYL-----FDRDCSVQRRHQKIIEEAPAPGLPEEFHRHIGEAAVRAARAVGYRNAGTVEF 338

Query: 249 LFDPL--SRKVFWLEINV 264
           + D     ++ +++E+N 
Sbjct: 339 IVDTDSAEQQFYFMEMNT 356


>gi|119386392|ref|YP_917447.1| carbamoyl-phosphate synthase L chain, ATP-binding [Paracoccus
           denitrificans PD1222]
 gi|119376987|gb|ABL71751.1| biotin carboxyl carrier protein / biotin carboxylase [Paracoccus
           denitrificans PD1222]
          Length = 685

 Score = 76.7 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 73/220 (33%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      LE   + +      A     DK+ SK++    GV   P  + 
Sbjct: 77  AVHPGYGFLSENMKFAEALEKEGVVFIGPPSPAIEAMGDKITSKKLAQEAGVSTVPGYMG 136

Query: 114 NRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
                D        I  P +IK   GG   G+ +   DQ           ++++    D+
Sbjct: 137 LIADADEAVKISGQIGYPVMIKASAGGGGKGMRIAWNDQEAREGFESSKNEAANSFGDDR 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE++V     +   V+ D   +   +   +        K             +     
Sbjct: 197 IFIEKFVTQPRHIEIQVLADKHGNCVYVHERECSIQRRNQK----VIEEAPSPFLDEATR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K +   A    +A+G       +F+ D      ++LE+N 
Sbjct: 253 KAMGEQAVALAKAVGYASAGTVEFIVDGQKN-FYFLEMNT 291


>gi|190346302|gb|EDK38354.2| hypothetical protein PGUG_02452 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 720

 Score = 76.7 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 29/196 (14%), Positives = 68/196 (34%), Gaps = 12/196 (6%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS---ILVNRFTMDSQHLISPPYVIKP 132
            I +      A      K  ++++ S+ GVP+ P    +  ++   +    +  P ++K 
Sbjct: 374 GIVFVGPAGDAIRKLGLKHSAREIASAAGVPLVPGSGLVKDSKEAKEIAAKLEYPIMVKS 433

Query: 133 LKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQLLIEQYV-DGIELTCGVMGDASL 187
             GG  +G+  +  +  I         Q  S+     + +E++V D   +   + GD   
Sbjct: 434 TAGGGGIGLQKVDSEADIERVFQTVQHQGKSYFGDSGVFLERFVEDARHVEIQMFGDGYG 493

Query: 188 DVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
               +            K             +P      +++ A      +  +     +
Sbjct: 494 KAIALGERDCSLQRRNQKII----EETPAPNLPEATRARMRKAAESLGATMNYKCAGTVE 549

Query: 248 FLFDPLSRKVFWLEIN 263
           F++D    + ++LE+N
Sbjct: 550 FIYDQRRDEFYFLEVN 565


>gi|326200876|ref|ZP_08190748.1| acetyl-CoA carboxylase, biotin carboxylase [Clostridium
           papyrosolvens DSM 2782]
 gi|325988444|gb|EGD49268.1| acetyl-CoA carboxylase, biotin carboxylase [Clostridium
           papyrosolvens DSM 2782]
          Length = 458

 Score = 76.7 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 41/219 (18%), Positives = 87/219 (39%), Gaps = 16/219 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+    ++ E   I +   G    +   DK  +++++ +  +PV P    
Sbjct: 77  AIHPGYGLLSENSKFASLCEKCNIVFIGPGSDIISKMGDKDNARRIMQNASIPVIPGGDI 136

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQL 166
           I   +  ++  + I  P +IK   GG   GI ++  +       L +SS           
Sbjct: 137 IENPKDAINIANDIGYPLLIKARAGGGGKGIRIVYNENEFESAYLTASSEAKSAFGDGAC 196

Query: 167 LIEQYVDGI-ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
            IE+Y+  +  +   ++ D    V  +   +    S + K+  L         I  ++ K
Sbjct: 197 YIEKYLSPVKHVEMQILCDNYGKVVCLGERE---CSLQRKHQKL-IEESPSTAIGAELRK 252

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           ++ ++A    +A    G+   +FL D      +++E+N 
Sbjct: 253 KMMKVAVKVAKATNYTGVGTVEFLLDKYGN-FYFMEMNT 290


>gi|266621406|ref|ZP_06114341.1| carbamoyl-phosphate synthase, large subunit [Clostridium hathewayi
           DSM 13479]
 gi|288866920|gb|EFC99218.1| carbamoyl-phosphate synthase, large subunit [Clostridium hathewayi
           DSM 13479]
          Length = 1064

 Score = 76.7 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 38/232 (16%), Positives = 85/232 (36%), Gaps = 17/232 (7%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTMDSQHLISPPYV 129
           L  + +P   +       + D+    +++  C +P      V       ++ H +  P +
Sbjct: 647 LMKMGVPILGTAAEDVDAAEDRELFDKILEECRIPRPAGHTVFTAEEAKEAAHKLGYPVL 706

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           ++P       G+ +   DQ +   +   +       +L+++Y+ G E+    + D     
Sbjct: 707 VRPSYVLGGQGMQIAISDQDVDEFIGIINQIAQEHPILVDKYIMGKEIEVDAICDG---- 762

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           T+I +P    +       S +S  V PA  +     + +        +A+  +G+    F
Sbjct: 763 TDILIPGIMQHIERTGIHSGDSISVYPAPDLTEKNIETLVDYTEKLARALHVKGMINIQF 822

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           + D     V+ +E+N +   T     P ++   G     L   ++    C R
Sbjct: 823 IVD--GDDVYIIEVNPRSSRT----VPYISKVTGIPIVPLATQII----CGR 864



 Score = 69.0 bits (168), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 49/289 (16%), Positives = 100/289 (34%), Gaps = 39/289 (13%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQID-------VDRSVG--------------LV 45
           G ++E + +   G     +L++ G +V  ++        D+ +                +
Sbjct: 21  GQAAEFDYA---GTQACRSLKEEGIEVVLLNSNPATIMTDKDIADRVYIEPLTVEVVEQL 77

Query: 46  LAHLKPDLAFNVLHGNFG-------EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQ 98
           +   KPD     L G  G       ED           +    +  L    + D+   K+
Sbjct: 78  ILKEKPDSVLPTLGGQAGLNLAMELEDA---GFFRDHNVRLIGTTALTIKKAEDREMFKE 134

Query: 99  VVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
            +   G PV PS +V   +  ++    I  P V++P       G  + +  +     L  
Sbjct: 135 TMEKIGEPVAPSDIVEDVKHGLEIAAEIGYPVVLRPAYTLGGSGGGIAENPEQCAEILEN 194

Query: 157 SSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215
               +   Q+L+E+ + G  E+   VM D + +V  I V   +       ++  +     
Sbjct: 195 GLRLSRVGQVLVERCIAGWKEIEYEVMRDGAGNV--ITVCNMENIDPVGVHTGDSIVVAP 252

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              +    Y+ ++  A      +G  G     +  +P S +   +E+N 
Sbjct: 253 SQTLGDKEYQMLRTSALKIISELGITGGCNVQYALNPDSFEYCVIEVNP 301


>gi|167764426|ref|ZP_02436547.1| hypothetical protein BACSTE_02810 [Bacteroides stercoris ATCC
           43183]
 gi|167697095|gb|EDS13674.1| hypothetical protein BACSTE_02810 [Bacteroides stercoris ATCC
           43183]
          Length = 388

 Score = 76.7 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 45/247 (18%), Positives = 82/247 (33%), Gaps = 36/247 (14%)

Query: 39  DRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD-----K 93
             ++  V+   +PD+    +     E         L +       ++ SA +++     K
Sbjct: 53  GEALERVVRKHRPDIIVPEIEAIRTE--------RLYDFEKEGIQVVPSARAVNFTMNRK 104

Query: 94  MRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
                     G+                +   I  P V+KPL   S  G  ++K    + 
Sbjct: 105 AIRDLAAKELGLKTARYFYAKSLDELKAAAEKIGFPCVVKPLMSSSGKGQSLVKSADELE 164

Query: 152 LDLLQSSSWNHGD--QLLIEQYVDGIE----LTCGVMGDASLDVTEIA-VPKSDFYSYEL 204
                  + + GD  +L+IE+++        LT       +L    I  V K   Y    
Sbjct: 165 HAWEYGCNGSRGDIKELIIEEFIKFDSEITLLTVTQKNGPTLFCPPIGHVQKGGDY---- 220

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
                      PA I     KE Q +A    +A+   G+   +F     +  V++ E++ 
Sbjct: 221 ------RESFQPAHIDPAHLKEAQDMAEKVTRALTGAGLWGVEFFLSHENG-VYFSELSP 273

Query: 265 QP---GM 268
           +P   GM
Sbjct: 274 RPHDTGM 280


>gi|195953750|ref|YP_002122040.1| Carbamoyl-phosphate synthase L chain ATP-binding [Hydrogenobaculum
           sp. Y04AAS1]
 gi|195933362|gb|ACG58062.1| Carbamoyl-phosphate synthase L chain ATP-binding [Hydrogenobaculum
           sp. Y04AAS1]
          Length = 441

 Score = 76.7 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 42/218 (19%), Positives = 86/218 (39%), Gaps = 18/218 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---S 110
            +H  +G   E+     I++   I +         LS DK+++K++    GVPV P    
Sbjct: 77  AIHPGYGFLSENPTFAEIVQASNIKFVGPPSEVIELSGDKVKAKEIAKKAGVPVVPGSDG 136

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGDQL 166
            +      D  H I  P V+K   GG   GI +++ D+ +       + ++ +    +++
Sbjct: 137 EVSFLEAKDIAHKIGYPAVLKAAAGGGGRGIRIVRDDKELLEVMQTAMSEAKNAFGDERI 196

Query: 167 LIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
            IE+Y ++   +   ++ D   +V  +   +        K           A I     +
Sbjct: 197 YIEKYLINPKHIEVQILSDGR-NVITLGERECSLQRRHQKII----EESPSASISDSERE 251

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            +   A    +AI   G    +FL+     + +++E+N
Sbjct: 252 LLYEYAVRFAKAINYIGAGTVEFLYTE--GQFYFIEMN 287


>gi|325294099|ref|YP_004279963.1| pyruvate carboxylase [Agrobacterium sp. H13-3]
 gi|325061952|gb|ADY65643.1| pyruvate carboxylase [Agrobacterium sp. H13-3]
          Length = 1153

 Score = 76.7 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 78/221 (35%), Gaps = 18/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-L 112
            +H  +G   E            I +            +K+ ++ +  S  VPV P+   
Sbjct: 85  AIHPGYGLLSESPEFVEACNKAGITFIGPTADTMRQLGNKVAARNLAISVNVPVVPATKP 144

Query: 113 VNRFTMDSQHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSWNHGDQ 165
           +     + + L   I  P ++K   GG   G+  I+K + +         ++ +    D+
Sbjct: 145 LPDDMAEVERLAEEIGYPVMLKASWGGGGRGMRAIRKKEDLAREVTEAKREAKAAFGKDE 204

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           + +E+ ++    +   V+GD   +V  +            K          PA  +    
Sbjct: 205 VYLEKLLERARHVESQVLGDTHGNVVHLFERDCSIQRRNQK-----VVERAPAPYLSEAQ 259

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +E+   +     A    G    ++L D  + K +++E+N 
Sbjct: 260 RQELAAYSLKIAAATNYIGAGTVEYLMDVDTGKFYFIEVNP 300


>gi|315586974|gb|ADU41355.1| acetyl-CoA carboxylase subunit A [Helicobacter pylori 35A]
          Length = 455

 Score = 76.7 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 39/225 (17%), Positives = 77/225 (34%), Gaps = 14/225 (6%)

Query: 49  LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
            + D  F   +G   E+     I     + +        AL  DK ++K V+   G+PV 
Sbjct: 84  FEADAIFPG-YGFLSENQNFVEICSHHSLEFIGPSAKVMALMSDKSKAKSVMKEAGMPVI 142

Query: 109 PS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSW 160
                 +   +   +    I  P +IK   GG   G+ V+     +         ++ S 
Sbjct: 143 EGSDGLLKSYQEAEEIADKIGYPVIIKAAAGGGGRGMRVVGDKSKLKNLYLAAETEALSA 202

Query: 161 NHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI 219
                + +E+++     +   ++ D   +V  +          + K             +
Sbjct: 203 FGDGSVYLEKFINKPKHIEVQILADKHGNVIHVGERDCSVQRRQQKLI----EETPAVVL 258

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              I K +   A  A + IG  G    +FL D   +  +++E+N 
Sbjct: 259 EEGIRKRLLETAIKAAKYIGYVGAGTFEFLLDSNMKDFYFMEMNT 303


>gi|258423180|ref|ZP_05686073.1| acetyl-CoA carboxylase, biotin carboxylase [Staphylococcus aureus
           A9635]
 gi|257846630|gb|EEV70651.1| acetyl-CoA carboxylase, biotin carboxylase [Staphylococcus aureus
           A9635]
          Length = 451

 Score = 76.7 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 34/216 (15%), Positives = 83/216 (38%), Gaps = 15/216 (6%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-SILVNRFT 117
           +G   E+     + E  ++ +      +      K  +K  +    VPV P S  + +  
Sbjct: 81  YGFLAENADFAELCEACQLKFIGPSYQSIQKMGIKDVAKAEMIKANVPVVPGSDGLMKDV 140

Query: 118 MDSQHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS-----SWNHGDQLLIE 169
            +++ +   I  P +IK   GG   GI V + ++ +      +      ++ +G  L +E
Sbjct: 141 SEAKKIAKKIGYPVIIKATAGGGGKGIRVARDEKELETGFRMTEQEAQTAFGNGG-LYME 199

Query: 170 QYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           ++++    +   ++GD+  +V  +            +             +  +  +E+ 
Sbjct: 200 KFIENFRHIEIQIVGDSYGNVIHLGERDCTI----QRRMQKLVEEAPSPILDDETRREMG 255

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             A  A +A+        +F++D    K +++E+N 
Sbjct: 256 NAAVRAAKAVNYENAGTIEFIYDLNDNKFYFMEMNT 291


>gi|146417509|ref|XP_001484723.1| hypothetical protein PGUG_02452 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 720

 Score = 76.7 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 29/196 (14%), Positives = 68/196 (34%), Gaps = 12/196 (6%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS---ILVNRFTMDSQHLISPPYVIKP 132
            I +      A      K  ++++ S+ GVP+ P    +  ++   +    +  P ++K 
Sbjct: 374 GIVFVGPAGDAIRKLGLKHSAREIASAAGVPLVPGSGLVKDSKEAKEIAAKLEYPIMVKS 433

Query: 133 LKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQLLIEQYV-DGIELTCGVMGDASL 187
             GG  +G+  +  +  I         Q  S+     + +E++V D   +   + GD   
Sbjct: 434 TAGGGGIGLQKVDSEADIERVFQTVQHQGKSYFGDSGVFLERFVEDARHVEIQMFGDGYG 493

Query: 188 DVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
               +            K             +P      +++ A      +  +     +
Sbjct: 494 KAIALGERDCSLQRRNQKII----EETPAPNLPEATRARMRKAAESLGATMNYKCAGTVE 549

Query: 248 FLFDPLSRKVFWLEIN 263
           F++D    + ++LE+N
Sbjct: 550 FIYDQRRDEFYFLEVN 565


>gi|119946462|ref|YP_944142.1| carbamoyl-phosphate synthase L chain, ATP-binding [Psychromonas
            ingrahamii 37]
 gi|119865066|gb|ABM04543.1| Carbamoyl-phosphate synthase L chain, ATP-binding [Psychromonas
            ingrahamii 37]
          Length = 1520

 Score = 76.7 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 84/220 (38%), Gaps = 16/220 (7%)

Query: 57   VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
             LH   G   E      +     I +    + +     +K  + +     GVPV P    
Sbjct: 1024 ALHPGIGFLSESPHFADLCVGHNINFVGPSMNSMLTMGNKSNAIKTAQDNGVPVVPGSHG 1083

Query: 111  -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
             +      +D  + +  P ++K + GG   GI+VI+K + +     Q S+          
Sbjct: 1084 ILTGAEQALDIANAMGYPVLLKAVNGGGGKGILVIEKAEDMFAGFSQVSAEARSAFGNGD 1143

Query: 166  LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
            L +E+Y+     +   ++ D   +   + +          K    + + +LPA + +++ 
Sbjct: 1144 LYLEKYITSLRHIEVQLLRDKHCNTKVLGIRDCSVQRNNQKVVEESESTMLPAHLEVEVL 1203

Query: 225  KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            K    LA     A+   G    +F++D     ++++E+N 
Sbjct: 1204 KHTAALA----DAVDYMGAGTVEFIYDLDQDSIYFMEMNT 1239


>gi|294676468|ref|YP_003577083.1| propionyl-CoA carboxylase subunit alpha [Rhodobacter capsulatus SB
           1003]
 gi|294475288|gb|ADE84676.1| propionyl-CoA carboxylase, alpha subunit [Rhodobacter capsulatus SB
           1003]
          Length = 661

 Score = 76.7 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 74/220 (33%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E     A LE   + +      A     DK+ SK++    GV   P  + 
Sbjct: 71  AVHPGYGFLSERMDFAAALEKEGVIFVGPPSPAIEAMGDKITSKKLAQEAGVSTVPGYMG 130

Query: 114 NRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
                D        I  P +IK   GG   G+ +    +           ++++    D+
Sbjct: 131 LIADADEAVKISDQIGYPVMIKASAGGGGKGMRIAWNAEEAREGFQSSKNEAAASFGDDR 190

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE++V     +   V+ D   +   +   +        K             +     
Sbjct: 191 IFIEKFVTQPRHIEIQVLADQHGNCVYLNERECSIQRRNQK----VIEEAPSPFLDPATR 246

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K +   A    +A+G       +F+ D  +R  ++LE+N 
Sbjct: 247 KAMGEQACALAKAVGYTSAGTVEFIVDG-NRNFYFLEMNT 285


>gi|190346662|gb|EDK38801.2| hypothetical protein PGUG_02899 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 404

 Score = 76.7 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 53/281 (18%), Positives = 99/281 (35%), Gaps = 33/281 (11%)

Query: 1   MAVLMGGISSEREVSLSSGKACASA-----LEDAGFKVSQIDVDRSVGLVLAHLKPDLAF 55
           +A+     S+E   SL       SA     L   G +   ID+D  V + + + K D+  
Sbjct: 34  IAI----YSAEDAESLH----VLSADEAMLLPGVGAQAY-IDIDHVVSVAI-NSKADVVV 83

Query: 56  NVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR 115
              +G   E     A LE   I +      +      K  ++ +  S  VPV P   +  
Sbjct: 84  PG-YGFLSESPQFAAALEKKGIVFAGPTGKSIDTFGLKHSARSLAESNDVPVVPGSGLIT 142

Query: 116 FTMDSQHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQLLI 168
              ++Q +   I  P ++K   GG  +G+ V  ++  +     +  S            +
Sbjct: 143 DIAEAQSIANRIGYPVMLKSTAGGGGMGLKVCYREDELSDAFKEVVSRGETLFNNSGAFL 202

Query: 169 EQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD----I 223
           E+YV+ G  +   V G+    V      +        K          P+    +    +
Sbjct: 203 EKYVECGRHIEVQVFGNGQGYVRAFGERECSIQRRHQK-----VIEEAPSPFVENGRTSL 257

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            K++   A     ++  +     +FL D  +   ++LE+N 
Sbjct: 258 RKQLVTCAAHLAASVKYKSAGTVEFLVDDETGSFYFLEMNT 298


>gi|196040278|ref|ZP_03107579.1| putative acetyl-CoA carboxylase, biotin carboxylase [Bacillus
           cereus NVH0597-99]
 gi|206973755|ref|ZP_03234673.1| putative acetyl-CoA carboxylase, biotin carboxylase [Bacillus
           cereus H3081.97]
 gi|217960000|ref|YP_002338556.1| acetyl-CoA carboxylase biotin carboxylase subunit [Bacillus cereus
           AH187]
 gi|222096086|ref|YP_002530143.1| acetyl-CoA carboxylase biotin carboxylase subunit [Bacillus cereus
           Q1]
 gi|229091538|ref|ZP_04222747.1| Biotin carboxylase [Bacillus cereus Rock3-42]
 gi|229139192|ref|ZP_04267767.1| Biotin carboxylase [Bacillus cereus BDRD-ST26]
 gi|229196722|ref|ZP_04323465.1| Biotin carboxylase [Bacillus cereus m1293]
 gi|196028763|gb|EDX67369.1| putative acetyl-CoA carboxylase, biotin carboxylase [Bacillus
           cereus NVH0597-99]
 gi|206747911|gb|EDZ59300.1| putative acetyl-CoA carboxylase, biotin carboxylase [Bacillus
           cereus H3081.97]
 gi|217067281|gb|ACJ81531.1| putative acetyl-CoA carboxylase, biotin carboxylase [Bacillus
           cereus AH187]
 gi|221240144|gb|ACM12854.1| propionyl-CoA carboxylase [Bacillus cereus Q1]
 gi|228586797|gb|EEK44872.1| Biotin carboxylase [Bacillus cereus m1293]
 gi|228644251|gb|EEL00508.1| Biotin carboxylase [Bacillus cereus BDRD-ST26]
 gi|228691832|gb|EEL45580.1| Biotin carboxylase [Bacillus cereus Rock3-42]
 gi|324326517|gb|ADY21777.1| acetyl-CoA carboxylase biotin carboxylase subunit [Bacillus
           thuringiensis serovar finitimus YBT-020]
          Length = 445

 Score = 76.7 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 80/220 (36%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       +   I +             K+ S+  + +  VPV P I  
Sbjct: 77  AIHPGYGLLSENPSFPVRCKEEGIVFIGPSEEIITKMGSKIESRIAMQAADVPVVPGITT 136

Query: 114 N----RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
           N       ++    I  P ++K   GG  +G+ +++ +Q++         ++ ++    +
Sbjct: 137 NIETAEEAIEIAKQIGYPLMLKASAGGGGIGMQLMETEQTLTKAFESNKTRAQNFFGNGE 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+Y+ D   +   ++ D   +   +   +        K             +     
Sbjct: 197 MYLERYIADAHHIEIQLLADTHGNTVYLWERECSVQRRNQK----VIEEAPSPFLDEGTR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K +  +A  A +A+G       +FL D      ++LE+N 
Sbjct: 253 KAMGEVAVQAAKALGYTNAGTVEFLVDDQKN-FYFLEMNT 291


>gi|154252340|ref|YP_001413164.1| Urea carboxylase [Parvibaculum lavamentivorans DS-1]
 gi|154156290|gb|ABS63507.1| Urea carboxylase [Parvibaculum lavamentivorans DS-1]
          Length = 1205

 Score = 76.7 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 76/220 (34%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+    + L    + +             K  ++++    GVP+ P    
Sbjct: 77  AVHPGYGFLSENPEFASALSRDGVAFIGPRPEHMCAFALKHTARELAEKSGVPLLPGSGL 136

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQL 166
           I+     +     I  P ++K   GG  +G+ + +    +P         + +      L
Sbjct: 137 IVDLDDALTQAEEIGYPVMLKSTAGGGGIGLQLCRSAADMPRLYDTVRRLALANFKDSGL 196

Query: 167 LIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIY 224
            +E+YV     +   + GD   +V  +            +  +       PA  +   + 
Sbjct: 197 FLEKYVAAARHIEVQIFGDGDGNVIALGE-----RDCSAQRRNQKVIEETPAPNLEAGMR 251

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +   A    +++        +F++D   RK ++LE+N 
Sbjct: 252 AALHEAAVRLGESVSYASAGTVEFIYDETERKFYFLEVNT 291


>gi|77164564|ref|YP_343089.1| Acetyl-CoA carboxylase, biotin carboxylase [Nitrosococcus oceani
           ATCC 19707]
 gi|254433885|ref|ZP_05047393.1| acetyl-CoA carboxylase, biotin carboxylase [Nitrosococcus oceani
           AFC27]
 gi|76882878|gb|ABA57559.1| acetyl-CoA carboxylase carboxyltransferase subunit alpha
           [Nitrosococcus oceani ATCC 19707]
 gi|207090218|gb|EDZ67489.1| acetyl-CoA carboxylase, biotin carboxylase [Nitrosococcus oceani
           AFC27]
          Length = 446

 Score = 76.7 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 82/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      +E     +         L  DK+ + + + S GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAERVEQSGFVFIGPRPETIRLIGDKVSAIKAMKSSGVPCVPGSEG 136

Query: 114 NRFTMDSQHL-----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
                D +++     I  P +IK   GG   G+ V+  +  +P  +     ++S+    D
Sbjct: 137 PLGEDDEENIAIAKEIGYPVMIKASGGGGGRGMRVVHSEAHLPTAISLTRSEASAAFGND 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+Y++    +   V+ D       +            K          PA  I  +
Sbjct: 197 MVYMEKYLENPRHVEFQVLADTHGQAIYLGERDCSMQRRHQK-----VVEEAPAPGITNE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             + +  +   A + +G RG    +FL+     + +++E+N 
Sbjct: 252 QRQRMGEICTEACRKMGYRGAGTFEFLY--QDGEFYFIEMNT 291


>gi|47570206|ref|ZP_00240859.1| propionyl-CoA carboxylase, alpha subunit [Bacillus cereus G9241]
 gi|47553112|gb|EAL11510.1| propionyl-CoA carboxylase, alpha subunit [Bacillus cereus G9241]
          Length = 445

 Score = 76.7 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 80/220 (36%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       +   I +             K+ S+  + +  VPV P I  
Sbjct: 77  AIHPGYGLLSENPSFPVRCKEEGIVFIGPSEEIITKMGSKIESRIAMQAADVPVVPGITT 136

Query: 114 N----RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
           N       ++    I  P ++K   GG  +G+ +++ +Q++         ++ ++    +
Sbjct: 137 NIETAEEAIEIAKQIGYPLMLKASAGGGGIGMQLMETEQTLTKAFESNKTRAQNFFGNGE 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+Y+ D   +   ++ D   +   +   +        K             +     
Sbjct: 197 MYLERYIADAHHIEIQLLADTHGNTVYLWERECSVQRRNQK----VIEEAPSPFLDEGTR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K +  +A  A +A+G       +FL D      ++LE+N 
Sbjct: 253 KAMGEVAVQAAKALGYTNAGTVEFLVDDQKN-FYFLEMNT 291


>gi|327193828|gb|EGE60705.1| acetyl-CoA carboxylase, biotin carboxylase protein [Rhizobium etli
           CNPAF512]
          Length = 464

 Score = 76.7 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 39/222 (17%), Positives = 82/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--I 111
            +H  +G   E+      +E + + +      + A+  DK+ +K+ + + GVP  P    
Sbjct: 90  AIHPGYGFLSENAAFADAVEKVGLTFIGPTASSIAIMGDKIAAKRAMMAAGVPCVPGPDS 149

Query: 112 LVNRFTMDSQHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG----D 164
            +       + +   I  P ++K   GG   G+ V+ K   +   +  +           
Sbjct: 150 ALPDDPAAIERIALEIGYPVIVKASGGGGGRGMRVVPKANQLHEAIALTREEARKAFGSP 209

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            L +E+++     +   V+ D   +   +           ++          PA  I  D
Sbjct: 210 SLYMEKFLQHPRHVEIQVLCDDHGNAVWL-----GHRDCSMQRRHQKVVEEAPAPGIAPD 264

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           I + V      A + IG RG+   +FL+       +++E+N 
Sbjct: 265 IIQPVGMACVEACRQIGYRGVGTFEFLY--EDGAFYFIEMNT 304


>gi|146278337|ref|YP_001168496.1| carbamoyl-phosphate synthase L chain, ATP-binding [Rhodobacter
           sphaeroides ATCC 17025]
 gi|145556578|gb|ABP71191.1| Carbamoyl-phosphate synthase L chain, ATP-binding [Rhodobacter
           sphaeroides ATCC 17025]
          Length = 666

 Score = 76.7 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 72/220 (32%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E     A LE   + +      A     DK+ SK++    GV   P  + 
Sbjct: 77  AVHPGYGFLSERMDFAAALEKAGVVFIGPPSPAIEAMGDKITSKKLAKEAGVSTVPGYMG 136

Query: 114 NRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
                D        I  P +IK   GG   G+ +    Q           ++++    D+
Sbjct: 137 LIADADEAVKISDEIGYPVMIKASAGGGGKGMRIAWNAQEAREGFESSKNEAANSFGDDR 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE++V     +   V+ D   +   +   +        K             +     
Sbjct: 197 IFIEKFVTQPRHIEIQVLADKHGNCVYLHERECSIQRRNQK----VIEEAPSPFLDEATR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K +   A    +A+G       +F+ D      ++LE+N 
Sbjct: 253 KAMGEQAVALAKAVGYASAGTVEFIVDGQKN-FYFLEMNT 291


>gi|88797311|ref|ZP_01112901.1| hypothetical protein MED297_20797 [Reinekea sp. MED297]
 gi|88780180|gb|EAR11365.1| hypothetical protein MED297_20797 [Reinekea sp. MED297]
          Length = 484

 Score = 76.7 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 35/191 (18%), Positives = 71/191 (37%), Gaps = 15/191 (7%)

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSS 138
              +     +K+      S   VP   + +++  T D+    +     P V+K  +G  S
Sbjct: 269 DPQSILRCCNKVFLHDAFSYQNVPTPRTQILHELTADTVDQLEQAFDYPMVVKLPEGSFS 328

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKS 197
            G+  +   Q +   L +   ++    +L+++Y+    +   GV+    L      + ++
Sbjct: 329 RGVFKVTTGQELKERLQEM--FDVSALVLVQEYMYTDYDWRIGVLNGRPLYACRYQMAQN 386

Query: 198 --DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255
               Y + +K      +  LP     ++ K V   A  A + IG       D      + 
Sbjct: 387 HWQIYDHSVKGDGSGDSDTLP---TFEVPKSVLDTALKACRLIGNGLYG-VD--VKVKNG 440

Query: 256 KVFWLEINVQP 266
           K + LE+N  P
Sbjct: 441 KPYVLEVNDNP 451


>gi|326329427|ref|ZP_08195751.1| acetyl/propionyl-CoA carboxylase, alpha subunit [Nocardioidaceae
           bacterium Broad-1]
 gi|325952753|gb|EGD44769.1| acetyl/propionyl-CoA carboxylase, alpha subunit [Nocardioidaceae
           bacterium Broad-1]
          Length = 628

 Score = 76.7 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 40/217 (18%), Positives = 84/217 (38%), Gaps = 21/217 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      +E   + +      +      K+ +K+++++ GVPV      
Sbjct: 77  AIHPGYGFLSENADFARAVEAAGLVWIGPAPESIEQMGSKIEAKKIMAAAGVPVLE---- 132

Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQLLIE 169
                 S      P ++K   GG   G+ +++   ++  ++  + +          + +E
Sbjct: 133 ---APASPVEADLPLLVKASAGGGGRGMRIVRSLDALAAEIAAAEAEAASAFGDGTVFVE 189

Query: 170 QYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEV 227
            YV+ G  +   V+GD + +V              ++          PA + P  +   +
Sbjct: 190 PYVEAGRHVEVQVVGDGAGNVAVFGE-----RDCSVQRRHQKVVEESPAPLLPDAVRSAL 244

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              A  A  AI  RG    +FL+D  S + ++LE+N 
Sbjct: 245 HEAARNAAAAIDYRGAGTVEFLYDAASERFWFLEMNT 281


>gi|302333203|gb|ADL23396.1| acetyl-CoA carboxylase accC (biotin carboxylase subunit)
           [Staphylococcus aureus subsp. aureus JKD6159]
          Length = 451

 Score = 76.7 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 34/216 (15%), Positives = 83/216 (38%), Gaps = 15/216 (6%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-SILVNRFT 117
           +G   E+     + E  ++ +      +      K  +K  +    VPV P S  + +  
Sbjct: 81  YGFLAENADFAELCEACQLKFIGPSYQSIQKMGIKDVAKAEMIKANVPVVPGSDGLMKDV 140

Query: 118 MDSQHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS-----SWNHGDQLLIE 169
            +++ +   I  P +IK   GG   GI V + ++ +      +      ++ +G  L +E
Sbjct: 141 SEAKKIAKKIGYPVIIKATAGGGGKGIRVARDEKELETGFRMTEQEAQTAFGNGG-LYME 199

Query: 170 QYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           ++++    +   ++GD+  +V  +            +             +  +  +E+ 
Sbjct: 200 KFIENFRHIEIQIVGDSYGNVIHLGERDCTI----QRRMQKLVEEAPSPILDDETRREMG 255

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             A  A +A+        +F++D    K +++E+N 
Sbjct: 256 NAAVRAAKAVNYENAGTIEFIYDLNDNKFYFMEMNT 291


>gi|221140053|ref|ZP_03564546.1| acetyl-CoA carboxylase biotin carboxylase subunit [Staphylococcus
           aureus subsp. aureus str. JKD6009]
 gi|304380885|ref|ZP_07363545.1| acetyl-CoA carboxylase, biotin carboxylase [Staphylococcus aureus
           subsp. aureus ATCC BAA-39]
 gi|269941017|emb|CBI49401.1| biotin carboxylase subunit of acetyl-CoAcarboxylase [Staphylococcus
           aureus subsp. aureus TW20]
 gi|302751358|gb|ADL65535.1| acetyl-CoA carboxylase accC (biotin carboxylase subunit)
           [Staphylococcus aureus subsp. aureus str. JKD6008]
 gi|304340612|gb|EFM06546.1| acetyl-CoA carboxylase, biotin carboxylase [Staphylococcus aureus
           subsp. aureus ATCC BAA-39]
 gi|329314204|gb|AEB88617.1| Acetyl-CoA carboxylase accC (Biotin carboxylase subunit)
           [Staphylococcus aureus subsp. aureus T0131]
          Length = 451

 Score = 76.7 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 34/216 (15%), Positives = 82/216 (37%), Gaps = 15/216 (6%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-SILVNRFT 117
           +G   E+     + E  ++ +      +      K  +K  +    VPV P S  + +  
Sbjct: 81  YGFLAENADFAELCEACQLKFIGPSYQSIQKMGIKDVAKAEMIKANVPVVPGSDGLMKDV 140

Query: 118 MDSQHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS-----SWNHGDQLLIE 169
            +++ +   I  P +IK   GG   GI V + ++ +      +      ++ +G  L +E
Sbjct: 141 SEAKKIAKKIGYPVIIKATAGGGGKGIRVARDEKELETGFRMTEQEAQTAFGNGG-LYME 199

Query: 170 QYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           ++++    +   ++GD   +V  +            +             +  +  +E+ 
Sbjct: 200 KFIENFRHIEIQIVGDNYGNVIHLGERDCTI----QRRMQKLVEEAPSPILDDETRREMG 255

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             A  A +A+        +F++D    K +++E+N 
Sbjct: 256 NAAVRAAKAVNYENAGTIEFIYDLNDNKFYFMEMNT 291


>gi|158521457|ref|YP_001529327.1| carbamoyl phosphate synthase large subunit [Desulfococcus
           oleovorans Hxd3]
 gi|158510283|gb|ABW67250.1| carbamoyl-phosphate synthase, large subunit [Desulfococcus
           oleovorans Hxd3]
          Length = 1066

 Score = 76.7 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 50/277 (18%), Positives = 95/277 (34%), Gaps = 34/277 (12%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL   G+ V  +              D+         ++  ++   +PD    
Sbjct: 29  SGTQACKALRSLGYTVVLVNSNPATIMTDPGMADITYIEPLNVATLTRIIEKERPDALLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G  G +   +     +L+   +      + A     D+   K  +   G+ +  S  
Sbjct: 89  NLGGQSGLNLSSELHQAGVLDKYGVKIIGVNVDAIKRGEDRTEFKNTMERLGIEMARSRT 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           V            I  P VI+P       G   +   + + +   +  + +  +Q+L+E+
Sbjct: 149 VTTVEDAEKVAEEIGYPVVIRPAYTMGGTGGGFVYNVEELRVIAARGLAASMVNQVLVEE 208

Query: 171 YVDG-IELTCGVMGD-ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            V G  EL   V+ D  +  +T   +   D           +S    P   I   + + +
Sbjct: 209 SVLGWEELELEVVRDAKNQKITVCFIENVDAMGVHT----GDSFCTAPMMTISPALQERL 264

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           Q+ ++    AI   G +   F  DP + +V  +EIN 
Sbjct: 265 QKYSYDIVDAIEVIGGTNVQFAHDPATGRVVVIEINP 301



 Score = 59.4 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 28/195 (14%), Positives = 68/195 (34%), Gaps = 6/195 (3%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQHLISPPYV 129
           LE   +    +      L+ D+ R +QV+   G+P   S + +     ++    I  P +
Sbjct: 646 LEAAGVNILGTSPDTIDLAEDRDRFRQVMQDLGIPQPESGMASTLDQALEIAARIGYPLM 705

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           ++P        + V+  ++ +   +  +   +    +LI+++++              D 
Sbjct: 706 VRPSYVLGGRAMEVVADEEMLRQYVTAAVDVSPDRPILIDKFLENAIEAEADAIADGTDA 765

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
              AV +    +    +S  ++  + P  IP      +          +   G+   +  
Sbjct: 766 FVPAVMEHIELAGV--HSGDSACVLPPVSIPEKHINTIVDYTRKIAMTLKVVGL--MNIQ 821

Query: 250 FDPLSRKVFWLEINV 264
           +      V+ LE N 
Sbjct: 822 YAIADDCVYILEANP 836


>gi|15924516|ref|NP_372050.1| acetyl-CoA carboxylase biotin carboxylase subunit [Staphylococcus
           aureus subsp. aureus Mu50]
 gi|15927107|ref|NP_374640.1| acetyl-CoA carboxylase biotin carboxylase subunit [Staphylococcus
           aureus subsp. aureus N315]
 gi|21283208|ref|NP_646296.1| acetyl-CoA carboxylase biotin carboxylase subunit [Staphylococcus
           aureus subsp. aureus MW2]
 gi|49483776|ref|YP_041000.1| acetyl-CoA carboxylase biotin carboxylase subunit [Staphylococcus
           aureus subsp. aureus MRSA252]
 gi|49486363|ref|YP_043584.1| acetyl-CoA carboxylase biotin carboxylase subunit [Staphylococcus
           aureus subsp. aureus MSSA476]
 gi|57650483|ref|YP_186412.1| acetyl-CoA carboxylase biotin carboxylase subunit [Staphylococcus
           aureus subsp. aureus COL]
 gi|82751131|ref|YP_416872.1| acetyl-CoA carboxylase biotin carboxylase subunit [Staphylococcus
           aureus RF122]
 gi|87160215|ref|YP_494171.1| acetyl-CoA carboxylase biotin carboxylase subunit [Staphylococcus
           aureus subsp. aureus USA300_FPR3757]
 gi|88195333|ref|YP_500137.1| acetyl-CoA carboxylase biotin carboxylase subunit [Staphylococcus
           aureus subsp. aureus NCTC 8325]
 gi|148268011|ref|YP_001246954.1| acetyl-CoA carboxylase biotin carboxylase subunit [Staphylococcus
           aureus subsp. aureus JH9]
 gi|150394078|ref|YP_001316753.1| acetyl-CoA carboxylase biotin carboxylase subunit [Staphylococcus
           aureus subsp. aureus JH1]
 gi|151221643|ref|YP_001332465.1| acetyl-CoA carboxylase biotin carboxylase subunit [Staphylococcus
           aureus subsp. aureus str. Newman]
 gi|156979845|ref|YP_001442104.1| acetyl-CoA carboxylase biotin carboxylase subunit [Staphylococcus
           aureus subsp. aureus Mu3]
 gi|161509755|ref|YP_001575414.1| acetyl-CoA carboxylase biotin carboxylase subunit [Staphylococcus
           aureus subsp. aureus USA300_TCH1516]
 gi|253314896|ref|ZP_04838109.1| acetyl-CoA carboxylase biotin carboxylase subunit [Staphylococcus
           aureus subsp. aureus str. CF-Marseille]
 gi|253732180|ref|ZP_04866345.1| acetyl-CoA carboxylase biotin carboxylase subunit [Staphylococcus
           aureus subsp. aureus USA300_TCH959]
 gi|253733224|ref|ZP_04867389.1| acetyl-CoA carboxylase biotin carboxylase subunit [Staphylococcus
           aureus subsp. aureus TCH130]
 gi|255006313|ref|ZP_05144914.2| acetyl-CoA carboxylase biotin carboxylase subunit [Staphylococcus
           aureus subsp. aureus Mu50-omega]
 gi|257425652|ref|ZP_05602076.1| acetyl-CoA carboxylase, biotin carboxylase [Staphylococcus aureus
           subsp. aureus 55/2053]
 gi|257428313|ref|ZP_05604711.1| acetyl-CoA carboxylase, biotin carboxylase [Staphylococcus aureus
           subsp. aureus 65-1322]
 gi|257430950|ref|ZP_05607330.1| acetyl-CoA carboxylase biotin carboxylase subunit [Staphylococcus
           aureus subsp. aureus 68-397]
 gi|257433639|ref|ZP_05609997.1| acetyl-CoA carboxylase biotin carboxylase subunit [Staphylococcus
           aureus subsp. aureus E1410]
 gi|257436552|ref|ZP_05612596.1| acetyl-CoA carboxylase, biotin carboxylase [Staphylococcus aureus
           subsp. aureus M876]
 gi|257793603|ref|ZP_05642582.1| acetyl-CoA carboxylase, biotin carboxylase [Staphylococcus aureus
           A9781]
 gi|258411097|ref|ZP_05681377.1| acetyl-CoA carboxylase biotin carboxylase subunit [Staphylococcus
           aureus A9763]
 gi|258420099|ref|ZP_05683054.1| acetyl-CoA carboxylase, biotin carboxylase [Staphylococcus aureus
           A9719]
 gi|258437359|ref|ZP_05689343.1| biotin carboxylase [Staphylococcus aureus A9299]
 gi|258443565|ref|ZP_05691904.1| acetyl-CoA carboxylase biotin carboxylase subunit [Staphylococcus
           aureus A8115]
 gi|258446772|ref|ZP_05694926.1| acetyl-CoA carboxylase biotin carboxylase subunit [Staphylococcus
           aureus A6300]
 gi|258448686|ref|ZP_05696798.1| acetyl-CoA carboxylase biotin carboxylase subunit [Staphylococcus
           aureus A6224]
 gi|258451184|ref|ZP_05699219.1| acetyl-CoA carboxylase, biotin carboxylase [Staphylococcus aureus
           A5948]
 gi|258453503|ref|ZP_05701481.1| acetyl-CoA carboxylase biotin carboxylase subunit [Staphylococcus
           aureus A5937]
 gi|262049110|ref|ZP_06021987.1| acetyl-CoA carboxylase [Staphylococcus aureus D30]
 gi|262051193|ref|ZP_06023417.1| acetyl-CoA carboxylase [Staphylococcus aureus 930918-3]
 gi|269203156|ref|YP_003282425.1| acetyl-CoA carboxylase biotin carboxylase subunit [Staphylococcus
           aureus subsp. aureus ED98]
 gi|282893028|ref|ZP_06301262.1| acetyl-CoA carboxylase, biotin carboxylase [Staphylococcus aureus
           A8117]
 gi|282904109|ref|ZP_06311997.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Staphylococcus
           aureus subsp. aureus C160]
 gi|282905936|ref|ZP_06313791.1| acetyl-CoA carboxylase biotin carboxylase [Staphylococcus aureus
           subsp. aureus Btn1260]
 gi|282908846|ref|ZP_06316664.1| acetyl-CoA carboxylase, biotin carboxylase [Staphylococcus aureus
           subsp. aureus WW2703/97]
 gi|282911165|ref|ZP_06318967.1| acetyl-CoA carboxylase, biotin carboxylase [Staphylococcus aureus
           subsp. aureus WBG10049]
 gi|282914334|ref|ZP_06322120.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Staphylococcus
           aureus subsp. aureus M899]
 gi|282924628|ref|ZP_06332296.1| acetyl-CoA carboxylase, biotin carboxylase [Staphylococcus aureus
           subsp. aureus C101]
 gi|282924775|ref|ZP_06332442.1| acetyl-CoA carboxylase, biotin carboxylase [Staphylococcus aureus
           A9765]
 gi|282928998|ref|ZP_06336585.1| acetyl-CoA carboxylase, biotin carboxylase [Staphylococcus aureus
           A10102]
 gi|283958291|ref|ZP_06375742.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Staphylococcus
           aureus subsp. aureus A017934/97]
 gi|284024586|ref|ZP_06378984.1| acetyl-CoA carboxylase biotin carboxylase subunit [Staphylococcus
           aureus subsp. aureus 132]
 gi|293510425|ref|ZP_06669131.1| acetyl-CoA carboxylase, biotin carboxylase [Staphylococcus aureus
           subsp. aureus M809]
 gi|293530965|ref|ZP_06671647.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Staphylococcus
           aureus subsp. aureus M1015]
 gi|294848557|ref|ZP_06789303.1| acetyl-CoA carboxylase [Staphylococcus aureus A9754]
 gi|295406649|ref|ZP_06816454.1| acetyl-CoA carboxylase [Staphylococcus aureus A8819]
 gi|295428105|ref|ZP_06820737.1| acetyl-CoA carboxylase [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|296275117|ref|ZP_06857624.1| acetyl-CoA carboxylase biotin carboxylase subunit [Staphylococcus
           aureus subsp. aureus MR1]
 gi|297207754|ref|ZP_06924189.1| acetyl-CoA carboxylase subunit A [Staphylococcus aureus subsp.
           aureus ATCC 51811]
 gi|297245768|ref|ZP_06929633.1| acetyl-CoA carboxylase [Staphylococcus aureus A8796]
 gi|297590929|ref|ZP_06949567.1| acetyl-CoA carboxylase subunit A [Staphylococcus aureus subsp.
           aureus MN8]
 gi|300911835|ref|ZP_07129278.1| acetyl-CoA carboxylase subunit A [Staphylococcus aureus subsp.
           aureus TCH70]
 gi|198443111|pdb|2VPQ|A Chain A, Crystal Structure Of Biotin Carboxylase From S. Aureus
           Complexed With Amppnp
 gi|198443112|pdb|2VPQ|B Chain B, Crystal Structure Of Biotin Carboxylase From S. Aureus
           Complexed With Amppnp
 gi|13701325|dbj|BAB42619.1| acetyl-CoA carboxylase accC [Staphylococcus aureus subsp. aureus
           N315]
 gi|14247297|dbj|BAB57688.1| acetyl-CoA carboxylase [Staphylococcus aureus subsp. aureus Mu50]
 gi|21204648|dbj|BAB95344.1| acetyl-CoA carboxylase accC [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49241905|emb|CAG40599.1| biotin carboxylase subunit of acetyl-CoA carboxylase
           [Staphylococcus aureus subsp. aureus MRSA252]
 gi|49244806|emb|CAG43257.1| biotin carboxylase subunit of acetyl-CoA carboxylase
           [Staphylococcus aureus subsp. aureus MSSA476]
 gi|57284669|gb|AAW36763.1| acetyl-CoA carboxylase, biotin carboxylase [Staphylococcus aureus
           subsp. aureus COL]
 gi|82656662|emb|CAI81088.1| acetyl-CoA biotin carboxylase [Staphylococcus aureus RF122]
 gi|87126189|gb|ABD20703.1| acetyl-CoA carboxylase, biotin carboxylase [Staphylococcus aureus
           subsp. aureus USA300_FPR3757]
 gi|87202891|gb|ABD30701.1| acetyl-CoA carboxylase, biotin carboxylase [Staphylococcus aureus
           subsp. aureus NCTC 8325]
 gi|147741080|gb|ABQ49378.1| acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha /
           biotin carboxylase [Staphylococcus aureus subsp. aureus
           JH9]
 gi|149946530|gb|ABR52466.1| acetyl-CoA carboxylase, biotin carboxylase [Staphylococcus aureus
           subsp. aureus JH1]
 gi|150374443|dbj|BAF67703.1| biotin carboxylase subunit of acetyl-CoA carboxylase
           [Staphylococcus aureus subsp. aureus str. Newman]
 gi|156721980|dbj|BAF78397.1| acetyl-CoA carboxylase [Staphylococcus aureus subsp. aureus Mu3]
 gi|160368564|gb|ABX29535.1| biotin carboxylase [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|253723969|gb|EES92698.1| acetyl-CoA carboxylase biotin carboxylase subunit [Staphylococcus
           aureus subsp. aureus USA300_TCH959]
 gi|253728764|gb|EES97493.1| acetyl-CoA carboxylase biotin carboxylase subunit [Staphylococcus
           aureus subsp. aureus TCH130]
 gi|257271346|gb|EEV03492.1| acetyl-CoA carboxylase, biotin carboxylase [Staphylococcus aureus
           subsp. aureus 55/2053]
 gi|257275154|gb|EEV06641.1| acetyl-CoA carboxylase, biotin carboxylase [Staphylococcus aureus
           subsp. aureus 65-1322]
 gi|257278380|gb|EEV09016.1| acetyl-CoA carboxylase biotin carboxylase subunit [Staphylococcus
           aureus subsp. aureus 68-397]
 gi|257281732|gb|EEV11869.1| acetyl-CoA carboxylase biotin carboxylase subunit [Staphylococcus
           aureus subsp. aureus E1410]
 gi|257283903|gb|EEV14026.1| acetyl-CoA carboxylase, biotin carboxylase [Staphylococcus aureus
           subsp. aureus M876]
 gi|257787575|gb|EEV25915.1| acetyl-CoA carboxylase, biotin carboxylase [Staphylococcus aureus
           A9781]
 gi|257840247|gb|EEV64711.1| acetyl-CoA carboxylase biotin carboxylase subunit [Staphylococcus
           aureus A9763]
 gi|257843810|gb|EEV68204.1| acetyl-CoA carboxylase, biotin carboxylase [Staphylococcus aureus
           A9719]
 gi|257848564|gb|EEV72552.1| biotin carboxylase [Staphylococcus aureus A9299]
 gi|257850971|gb|EEV74914.1| acetyl-CoA carboxylase biotin carboxylase subunit [Staphylococcus
           aureus A8115]
 gi|257854347|gb|EEV77296.1| acetyl-CoA carboxylase biotin carboxylase subunit [Staphylococcus
           aureus A6300]
 gi|257857964|gb|EEV80853.1| acetyl-CoA carboxylase biotin carboxylase subunit [Staphylococcus
           aureus A6224]
 gi|257861239|gb|EEV84052.1| acetyl-CoA carboxylase, biotin carboxylase [Staphylococcus aureus
           A5948]
 gi|257864234|gb|EEV86984.1| acetyl-CoA carboxylase biotin carboxylase subunit [Staphylococcus
           aureus A5937]
 gi|259160830|gb|EEW45850.1| acetyl-CoA carboxylase [Staphylococcus aureus 930918-3]
 gi|259162779|gb|EEW47344.1| acetyl-CoA carboxylase [Staphylococcus aureus D30]
 gi|262075446|gb|ACY11419.1| acetyl-CoA carboxylase biotin carboxylase subunit [Staphylococcus
           aureus subsp. aureus ED98]
 gi|282313463|gb|EFB43858.1| acetyl-CoA carboxylase, biotin carboxylase [Staphylococcus aureus
           subsp. aureus C101]
 gi|282321515|gb|EFB51840.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Staphylococcus
           aureus subsp. aureus M899]
 gi|282324860|gb|EFB55170.1| acetyl-CoA carboxylase, biotin carboxylase [Staphylococcus aureus
           subsp. aureus WBG10049]
 gi|282327110|gb|EFB57405.1| acetyl-CoA carboxylase, biotin carboxylase [Staphylococcus aureus
           subsp. aureus WW2703/97]
 gi|282331228|gb|EFB60742.1| acetyl-CoA carboxylase biotin carboxylase [Staphylococcus aureus
           subsp. aureus Btn1260]
 gi|282589405|gb|EFB94496.1| acetyl-CoA carboxylase, biotin carboxylase [Staphylococcus aureus
           A10102]
 gi|282592782|gb|EFB97788.1| acetyl-CoA carboxylase, biotin carboxylase [Staphylococcus aureus
           A9765]
 gi|282595727|gb|EFC00691.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Staphylococcus
           aureus subsp. aureus C160]
 gi|282764346|gb|EFC04472.1| acetyl-CoA carboxylase, biotin carboxylase [Staphylococcus aureus
           A8117]
 gi|283790440|gb|EFC29257.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Staphylococcus
           aureus subsp. aureus A017934/97]
 gi|285817209|gb|ADC37696.1| Biotin carboxylase of acetyl-CoA carboxylase [Staphylococcus aureus
           04-02981]
 gi|290920233|gb|EFD97299.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Staphylococcus
           aureus subsp. aureus M1015]
 gi|291466789|gb|EFF09309.1| acetyl-CoA carboxylase, biotin carboxylase [Staphylococcus aureus
           subsp. aureus M809]
 gi|294824583|gb|EFG41006.1| acetyl-CoA carboxylase [Staphylococcus aureus A9754]
 gi|294968396|gb|EFG44420.1| acetyl-CoA carboxylase [Staphylococcus aureus A8819]
 gi|295128463|gb|EFG58097.1| acetyl-CoA carboxylase [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|296887771|gb|EFH26669.1| acetyl-CoA carboxylase subunit A [Staphylococcus aureus subsp.
           aureus ATCC 51811]
 gi|297177419|gb|EFH36671.1| acetyl-CoA carboxylase [Staphylococcus aureus A8796]
 gi|297575815|gb|EFH94531.1| acetyl-CoA carboxylase subunit A [Staphylococcus aureus subsp.
           aureus MN8]
 gi|300886081|gb|EFK81283.1| acetyl-CoA carboxylase subunit A [Staphylococcus aureus subsp.
           aureus TCH70]
 gi|312438005|gb|ADQ77076.1| acetyl-CoA carboxylase, biotin carboxylase [Staphylococcus aureus
           subsp. aureus TCH60]
 gi|312829916|emb|CBX34758.1| acetyl-CoA carboxylase, biotin carboxylase [Staphylococcus aureus
           subsp. aureus ECT-R 2]
 gi|315129804|gb|EFT85794.1| acetyl-CoA carboxylase biotin carboxylase subunit [Staphylococcus
           aureus subsp. aureus CGS03]
 gi|315195428|gb|EFU25815.1| acetyl-CoA carboxylase biotin carboxylase subunit [Staphylococcus
           aureus subsp. aureus CGS00]
 gi|315198779|gb|EFU29107.1| acetyl-CoA carboxylase biotin carboxylase subunit [Staphylococcus
           aureus subsp. aureus CGS01]
 gi|320140588|gb|EFW32442.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Staphylococcus
           aureus subsp. aureus MRSA131]
 gi|320144125|gb|EFW35894.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Staphylococcus
           aureus subsp. aureus MRSA177]
 gi|329728360|gb|EGG64797.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Staphylococcus
           aureus subsp. aureus 21189]
          Length = 451

 Score = 76.7 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 34/216 (15%), Positives = 83/216 (38%), Gaps = 15/216 (6%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-SILVNRFT 117
           +G   E+     + E  ++ +      +      K  +K  +    VPV P S  + +  
Sbjct: 81  YGFLAENADFAELCEACQLKFIGPSYQSIQKMGIKDVAKAEMIKANVPVVPGSDGLMKDV 140

Query: 118 MDSQHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS-----SWNHGDQLLIE 169
            +++ +   I  P +IK   GG   GI V + ++ +      +      ++ +G  L +E
Sbjct: 141 SEAKKIAKKIGYPVIIKATAGGGGKGIRVARDEKELETGFRMTEQEAQTAFGNGG-LYME 199

Query: 170 QYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           ++++    +   ++GD+  +V  +            +             +  +  +E+ 
Sbjct: 200 KFIENFRHIEIQIVGDSYGNVIHLGERDCTI----QRRMQKLVEEAPSPILDDETRREMG 255

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             A  A +A+        +F++D    K +++E+N 
Sbjct: 256 NAAVRAAKAVNYENAGTIEFIYDLNDNKFYFMEMNT 291


>gi|327188274|gb|EGE55494.1| putative urea amidolyase protein [Rhizobium etli CNPAF512]
          Length = 1179

 Score = 76.7 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 41/256 (16%), Positives = 92/256 (35%), Gaps = 30/256 (11%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      L    I +        +    K  ++++  +  VP+ P   +
Sbjct: 77  AVHPGYGFLSENIGFAERLAAEGIAFIGPRPEHLSAFGLKHTARELAKASAVPLLPGSGL 136

Query: 114 NRFTMDS---QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQL 166
                ++      I  P ++K   GG  +G+ +    +S+          + +     ++
Sbjct: 137 LSGADEALSAAEAIGYPVMLKSTAGGGGIGMQLCADPESLKASFESVQRTARASFGDARV 196

Query: 167 LIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIY 224
            IE++V D   +   + GD   +V  +           L+  +       PA  +     
Sbjct: 197 YIERFVADARHVEVQIFGDGRGNVIALGE-----RDCSLQRRNQKVVEETPAPGLSAATR 251

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI---FPEMAAYA 281
             + + A      +        +F++DPL ++ ++LE+N +       +    P   A  
Sbjct: 252 GRLHKAAVDLGALVSYESAGTVEFIYDPLRQEFYFLEVNTR-------LQVEHPVTEAVF 304

Query: 282 GYSFRELLLWMVEDAS 297
           G    +L+ WM+  A+
Sbjct: 305 GI---DLVEWMIRQAA 317


>gi|317014468|gb|ADU81904.1| biotin carboxylase [Helicobacter pylori Gambia94/24]
          Length = 455

 Score = 76.7 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 38/225 (16%), Positives = 77/225 (34%), Gaps = 14/225 (6%)

Query: 49  LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
            + D  F   +G   E+     I     + +        AL  DK ++K V+   G+PV 
Sbjct: 84  FEADAIFPG-YGFLSENQNFVEICSHHSLEFIGPSAKVMALMSDKAKAKIVMKEAGMPVI 142

Query: 109 PS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSW 160
                 +   +   +    I  P +IK   GG   G+ V+     +         ++ S 
Sbjct: 143 EGSDGLLKSYQEAEEIADKIGYPVIIKAAAGGGGRGMRVVGDKSKLKNLYLAAETEALSA 202

Query: 161 NHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI 219
                + +E+++     +   ++ D   +V  +          + K             +
Sbjct: 203 FGDGSVYLEKFINKPKHIEVQILADKHGNVIHVGERDCSVQRRQQKLI----EETPAVVL 258

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              + K +   A  A + IG  G    +FL D   +  +++E+N 
Sbjct: 259 EEGVRKRLLETAIKAAKYIGYVGAGTFEFLLDSNMKDFYFMEMNT 303


>gi|283470805|emb|CAQ50016.1| acetyl-CoA carboxylase, biotin carboxylase [Staphylococcus aureus
           subsp. aureus ST398]
          Length = 451

 Score = 76.7 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 34/216 (15%), Positives = 83/216 (38%), Gaps = 15/216 (6%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-SILVNRFT 117
           +G   E+     + E  ++ +      +      K  +K  +    VPV P S  + +  
Sbjct: 81  YGFLAENADFAELCEACQLKFIGPSYQSIQKMGIKDVAKAEMIKANVPVVPGSDGLMKDV 140

Query: 118 MDSQHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS-----SWNHGDQLLIE 169
            +++ +   I  P +IK   GG   GI V + ++ +      +      ++ +G  L +E
Sbjct: 141 SEAKKIAKKIGYPVIIKATAGGGGKGIRVARDEKELETGFRMTEQEAQTAFGNGG-LYME 199

Query: 170 QYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           ++++    +   ++GD+  +V  +            +             +  +  +E+ 
Sbjct: 200 KFIENFRHIEIQIVGDSYGNVIHLGERDCTI----QRRMQKLVEEAPSPILDDETRREMG 255

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             A  A +A+        +F++D    K +++E+N 
Sbjct: 256 NAAVRAAKAVNYENAGTIEFIYDLNDNKFYFMEMNT 291


>gi|282919303|ref|ZP_06327038.1| acetyl-CoA carboxylase, biotin carboxylase [Staphylococcus aureus
           subsp. aureus C427]
 gi|282317113|gb|EFB47487.1| acetyl-CoA carboxylase, biotin carboxylase [Staphylococcus aureus
           subsp. aureus C427]
          Length = 451

 Score = 76.7 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 34/216 (15%), Positives = 83/216 (38%), Gaps = 15/216 (6%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-SILVNRFT 117
           +G   E+     + E  ++ +      +      K  +K  +    VPV P S  + +  
Sbjct: 81  YGFLAENADFAELCEACQLKFIGPSYQSIQKMGIKDVAKAEMIKANVPVVPGSDGLMKDV 140

Query: 118 MDSQHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS-----SWNHGDQLLIE 169
            +++ +   I  P +IK   GG   GI V + ++ +      +      ++ +G  L +E
Sbjct: 141 SEAKKIAKKIGYPVIIKATAGGGGKGIRVARDEKELETGFRMTEQEAQTAFGNGG-LYME 199

Query: 170 QYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           ++++    +   ++GD+  +V  +            +             +  +  +E+ 
Sbjct: 200 KFIENFRHIEIQIVGDSYGNVIHLGERDCTI----QRRMQKLVEEAPSPILDDETRREMG 255

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             A  A +A+        +F++D    K +++E+N 
Sbjct: 256 NAAVRAAKAVNYENAGTIEFIYDLNDNKFYFMEMNT 291


>gi|295689563|ref|YP_003593256.1| acetyl-CoA carboxylase, biotin carboxylase [Caulobacter segnis ATCC
           21756]
 gi|295431466|gb|ADG10638.1| acetyl-CoA carboxylase, biotin carboxylase [Caulobacter segnis ATCC
           21756]
          Length = 448

 Score = 76.7 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 89/220 (40%), Gaps = 18/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---- 109
            +H  +G   E+     I+      +         +  DK+ +KQ V   G+PV P    
Sbjct: 77  AIHPGYGFLSENARFAEIVGAHGFTFIGPKPEHIRMMGDKITAKQAVKDAGIPVVPGSDG 136

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGDQ 165
            +       ++   I  P +IK   GG   G+ V +  + +   +     ++ +    D 
Sbjct: 137 GVSTEEEAFEAAEKIGFPVLIKAAAGGGGRGMKVAQTREDLAEAVSTARAEARAAFGDDT 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+Y+     +   V+ D+  +V  +        S + ++  +      PA +  +  
Sbjct: 197 VYMERYLQKPRHIELQVIADSHGNVVHLGERD---CSLQRRHQKVLEEAPSPA-LSAEGR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            ++ ++   A +AIG  G+   +FL+   + + F++E+N 
Sbjct: 253 AKIGKVVVDAVKAIGYLGVGTIEFLW--ENGEFFFIEMNT 290


>gi|251771072|gb|EES51656.1| acetyl-CoA carboxylase, biotin carboxylase [Leptospirillum
           ferrodiazotrophum]
          Length = 467

 Score = 76.7 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 43/220 (19%), Positives = 77/220 (35%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     I     I +        +L  DK R+K ++   GVPV P    
Sbjct: 84  AIHPGYGFLSENAHFAEICHAAGITFIGPSPETISLMGDKARAKALMREAGVPVVPGSIG 143

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
            I      +D    I  P +IK   GG   G+ ++   +           ++       +
Sbjct: 144 TIATESEGLDVASEIGYPLIIKASGGGGGRGMRIVTSPEEFSNAFQTAQTEALQAFGNKE 203

Query: 166 LLIEQ-YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+ +V+   +   V+GD+   +  +            K             I   + 
Sbjct: 204 VYIERFFVNPRHVEIQVLGDSDGTIYTLGERDCSIQRRHQKLL----EEAPSPFITAALR 259

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             + + A  A +A         +FL DP  R  F++E+N 
Sbjct: 260 SAMSQAAIAASKAADYVNAGTVEFLVDPEER-FFFIEMNT 298


>gi|257419909|ref|ZP_05596903.1| pyruvate carboxylase [Enterococcus faecalis T11]
 gi|257161737|gb|EEU91697.1| pyruvate carboxylase [Enterococcus faecalis T11]
          Length = 1142

 Score = 76.7 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 42/278 (15%), Positives = 94/278 (33%), Gaps = 29/278 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59
           +A+     ++E E S+   KA  + L   G K  +  +D  ++  +      D     +H
Sbjct: 28  VAI----YAAEDEYSVHRFKADEAYLVGKGKKPIEAYLDIENIIQIAKKSGAD----AIH 79

Query: 60  GNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----IL 112
             +G   E+       E   I +         +  DK+++K+   + G+   P     + 
Sbjct: 80  PGYGFLSENLRFAERCEEEGIIFVGPKTHHLDIFGDKIKAKEAAVAAGIASIPGSDGPVA 139

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGDQLLI 168
                +        P +IK   GG   G+ V    +           ++ +    D++ +
Sbjct: 140 TVEEVVAFGETHGFPIMIKAALGGGGRGMRVAHDVKEAREGYERAKSEAKAAFGSDEVYV 199

Query: 169 EQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKE 226
           E+Y+ +   +   ++GD   +V              ++        V P   +  +    
Sbjct: 200 EKYISNPKHIEVQILGDHHGNVL-----HLFERDCSVQRRHQKVVEVAPCVSMNEEQRAA 254

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +   A      +G       +FL      + +++E+N 
Sbjct: 255 ICSAAVQLMAHVGYVNAGTVEFLV--EGDQFYFIEVNP 290


>gi|229030227|ref|ZP_04186284.1| Biotin carboxylase [Bacillus cereus AH1271]
 gi|228731071|gb|EEL81996.1| Biotin carboxylase [Bacillus cereus AH1271]
          Length = 445

 Score = 76.7 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 79/220 (35%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+           I +             K+ S+  + +  VPV P I  
Sbjct: 77  AIHPGYGLLSENPSFPVRCREEGIVFIGPSEEIITKMGSKIESRIAMQAADVPVVPGITT 136

Query: 114 N----RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
           N       ++    I  P ++K   GG  +G+ +++ +Q++         ++ ++    +
Sbjct: 137 NIETAEEAIEIAKQIGYPLMLKASAGGGGIGMQLMETEQTLTKAFESNKTRAQNFFGNGE 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+Y+ D   +   ++ D   +   +   +        K             +     
Sbjct: 197 MYLERYIADAHHIEIQLLADTHGNTVYLWERECSVQRRNQK----VIEEAPSPFLDEGTR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K +  +A  A +A+G       +FL D      ++LE+N 
Sbjct: 253 KAMGEVAVQAAKALGYTNAGTVEFLVDDQKN-FYFLEMNT 291


>gi|262199308|ref|YP_003270517.1| hypothetical protein Hoch_6149 [Haliangium ochraceum DSM 14365]
 gi|262082655|gb|ACY18624.1| conserved hypothetical protein [Haliangium ochraceum DSM 14365]
          Length = 441

 Score = 76.7 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 40/196 (20%), Positives = 85/196 (43%), Gaps = 11/196 (5%)

Query: 69  QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPY 128
           Q + + LE+P    G  AS +  DK   +  +S+         + +   ++S   ++ PY
Sbjct: 104 QVVADYLELP--SPGWRASTVCRDKSLQRHYLSTW---SPAFHVRSPGDIESFDALAFPY 158

Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC-GVMGDASL 187
           V+KP +   S G++V++    +   L     +   + LL E+Y+DG E +   ++   ++
Sbjct: 159 VVKPARRSGSSGVVVVRDHDGLRRALPD---YADDEILLQEKYIDGAEFSVESLVQGGAI 215

Query: 188 DVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR-GISRS 246
             + +A  +++       Y    +  V    +  D+   +  +       +  R GI+ +
Sbjct: 216 LFSCVAEKRTNHSHEGGDYFVEMAHTVPAQNLSDDMRARLLEINKDILTRLDFRDGIAHA 275

Query: 247 DFLFDPLSRKVFWLEI 262
           +F FD  +   F +EI
Sbjct: 276 EFKFDREAN-PFLMEI 290


>gi|262201758|ref|YP_003272966.1| pyruvate carboxylase [Gordonia bronchialis DSM 43247]
 gi|262085105|gb|ACY21073.1| pyruvate carboxylase [Gordonia bronchialis DSM 43247]
          Length = 1129

 Score = 76.7 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 36/244 (14%), Positives = 78/244 (31%), Gaps = 16/244 (6%)

Query: 30  GFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
           G  V        V         D  +   +G   E+  + A      I +         L
Sbjct: 55  GHPVRAYLSVDEVVAAAVRCGADAIYPG-YGFLSENQGLAAACAQAGITFVGPSADVLEL 113

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMD---SQHLISPPYVIKPLKGGSSLGIIVIKK 146
           + +K  +     + G+PV  S   +    +   +   +  P  +K + GG   G+  + +
Sbjct: 114 TGNKATAVAAAKAAGLPVLASSEPSSDIDELLAAAEDMRFPVFVKAVAGGGGRGMRQVPR 173

Query: 147 DQSIPLDL-----LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYS 201
            + +   +        +++      L +  V+   +   ++ D   DV  +         
Sbjct: 174 IEDLAEAIGAASREAEAAFGDPTVFLEQAVVNPRHIEVQILADTHGDVIHLYE-----RD 228

Query: 202 YELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260
             ++        + PA  +  ++ + +   A    + IG       +FL D     VF  
Sbjct: 229 CSVQRRHQKVIELAPAPNLSPELRERICADAVAFARHIGYSCAGTVEFLLDEQGNHVFI- 287

Query: 261 EINV 264
           E+N 
Sbjct: 288 EMNP 291


>gi|182418931|ref|ZP_02950188.1| acetyl-CoA carboxylase, biotin carboxylase [Clostridium butyricum
           5521]
 gi|237667394|ref|ZP_04527378.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Clostridium
           butyricum E4 str. BoNT E BL5262]
 gi|182377214|gb|EDT74782.1| acetyl-CoA carboxylase, biotin carboxylase [Clostridium butyricum
           5521]
 gi|237655742|gb|EEP53298.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Clostridium
           butyricum E4 str. BoNT E BL5262]
          Length = 450

 Score = 76.7 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 81/220 (36%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  FG   E+     +     I +            DK ++++++    VPV P    
Sbjct: 77  AIHPGFGFLSENSKFAKMCRECNIKFIGPDYETIDFIGDKAKAREIMKFSDVPVVPGYEG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS----IPLDLLQSSSWNHGDQ 165
            I      ++    I  P +IK   GG   GI +   D+           ++ +    D 
Sbjct: 137 EIRDENHALELAKEIGYPIMIKASAGGGGKGIRIAFNDEEFLMGFKTAKAEAKACFGNDT 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           L +E+YV     +   ++ D   +V  +   +        K      ++V    +  ++ 
Sbjct: 197 LYLEKYVQKPKHIEFQILADEHGNVIHLGERECSMQRKNQKVLEEAPSNV----LNEELR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +++  +A  A  A+  +     +FLFD      +++E+N 
Sbjct: 253 EKMGEIAKRAALAVDYKNAGTIEFLFDK-DNNFYFMEMNT 291


>gi|119502734|ref|ZP_01624819.1| acetyl-CoA carboxylase [marine gamma proteobacterium HTCC2080]
 gi|119461080|gb|EAW42170.1| acetyl-CoA carboxylase [marine gamma proteobacterium HTCC2080]
          Length = 448

 Score = 76.7 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 74/222 (33%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         L  DK+ +K  +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAEQVEKSGFVFIGPTAETIRLMGDKVSAKHQMQRSGVPTVPGSEG 136

Query: 112 LVNRFTMDS---QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGD 164
            V     +       I  P ++K   GG   G+ V+  ++ +   +     ++ +     
Sbjct: 137 AVPEDPDEVLRIARDIGYPVIVKAAAGGGGRGMRVVHNEEVLLSSIQVTQSEAKAAFGSP 196

Query: 165 QLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + IE+++     +   ++ D   +               L+          PA  I   
Sbjct: 197 VVYIEKFLQRPRHVEIQILADGQGNAI-----HLGDRDCSLQRRHQKVIEEAPAPGIDEK 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +  E+      A   IG RG    +FL+       +++E+N 
Sbjct: 252 LRAEIGDACVKACIDIGYRGAGTFEFLY--EDGGFYFIEMNT 291


>gi|238879069|gb|EEQ42707.1| urea amidolyase [Candida albicans WO-1]
          Length = 1813

 Score = 76.3 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 39/285 (13%), Positives = 92/285 (32%), Gaps = 48/285 (16%)

Query: 19  GKACASALEDAGFKVSQI--DVDRSVGLVLAHLKPDLAFNVLHGN--------------- 61
                  L+  G K   +  D D+     L     D+A   LHG                
Sbjct: 627 AVRIIKTLKKLGVKSIAVYSDPDKYAQHSLMA---DVAIP-LHGTTAAETYINIEKVIKA 682

Query: 62  ---FGEDGLVQAI------------LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP 106
               G + ++                    I +      A      K  ++++    GVP
Sbjct: 683 AKESGAEAIIPGYGFLSENADFSDRCGKEGIVFVGPSGDAIRKLGLKHSAREIAEKAGVP 742

Query: 107 VCPSILVNRFTMDS---QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSS 159
           + P   + +   ++      +  P ++K   GG  +G+  +  ++ I         Q  S
Sbjct: 743 LVPGSGLVKDAKEARAIAAKLEYPIMVKSTAGGGGIGLQKVDSEKDIERVFETVQHQGKS 802

Query: 160 WNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
           +     + +E++V+    +   ++GD   +   +            K             
Sbjct: 803 YFGDSGVFLERFVENARHVEIQMLGDGYGNAIAVGERDCSLQRRNQKII----EETPAPN 858

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
           +P +   ++++ A     ++  +     ++++DP   + ++LE+N
Sbjct: 859 LPEETRNKMRKAAESLGSSMKYKCAGTVEYIYDPKRDEFYFLEVN 903


>gi|225027058|ref|ZP_03716250.1| hypothetical protein EUBHAL_01314 [Eubacterium hallii DSM 3353]
 gi|224955522|gb|EEG36731.1| hypothetical protein EUBHAL_01314 [Eubacterium hallii DSM 3353]
          Length = 1188

 Score = 76.3 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 39/256 (15%), Positives = 91/256 (35%), Gaps = 33/256 (12%)

Query: 32  KVSQIDVDR----------SVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIP 78
           +   ++ D+          ++  +    K D     +H  +G   E+          +I 
Sbjct: 53  EAYPLNPDKGPVDAYLDIPTIIRIAKEKKVD----AIHPGYGFLSENPEFAEACRKNDIV 108

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ----HLISPPYVIKPLK 134
           +    + A  +  DK+ +K+      VP+          +D+       I  P ++K   
Sbjct: 109 FIGPNVEAMNIMGDKISAKRAAEESKVPIIDGSDFIIHDVDTAMKIADEIGYPVMLKASN 168

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGD----QLLIEQY-VDGIELTCGVMGDASLDV 189
           GG   G+ +++  + +     +S + +       +L IE+Y +    +   ++GD   ++
Sbjct: 169 GGGGRGMRIVQSQEEMEEAFEKSRNESKRVFGEAKLFIEKYLIHPKHIEVQILGDNYGNI 228

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
             +           L+  +       PA  I  +  K++   A    + +G       +F
Sbjct: 229 VHLY-----DRDCSLQRRNQKVIEFAPAWSISEETRKKILDSAKRLARRVGYTNAGTMEF 283

Query: 249 LFDPLSRKVFWLEINV 264
           L D      +++E+N 
Sbjct: 284 LVDEEE-HPYFIEMNP 298


>gi|182624281|ref|ZP_02952066.1| carbamoyl-phosphate synthase, large subunit [Clostridium
           perfringens D str. JGS1721]
 gi|177910499|gb|EDT72872.1| carbamoyl-phosphate synthase, large subunit [Clostridium
           perfringens D str. JGS1721]
          Length = 1067

 Score = 76.3 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 34/232 (14%), Positives = 87/232 (37%), Gaps = 19/232 (8%)

Query: 67  LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV--PVCPSILVNRFTMDSQHLI 124
            +   L+   IP   +      L+ D+ +   ++    +  P    +      +D    +
Sbjct: 644 KLAKFLKEKNIPTLGTTSDQIDLAEDREQFDDLLERLNIARPKGKGVWSLEEGLDEARRL 703

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
             P +++P       G+ +   ++ +   L  +   +  + +LI++Y+ G E+    + D
Sbjct: 704 GFPILVRPSFVLGGQGMEITHDEEELTYYLTNAFEKDSKNPILIDKYLMGREIEVDAISD 763

Query: 185 AS---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGC 240
                +      + ++  +S        +S  + PA  I   I ++V         +IG 
Sbjct: 764 GEDVLVPGIMEHLERAGVHS-------GDSITMYPAQNISDKIKEDVLDYTKKLALSIGI 816

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +G+    F+      K++ +E+N +   T     P ++  +G    ++   +
Sbjct: 817 KGMINIQFI--EFEGKLYVIEVNPRASRT----VPYISKVSGVPIVDIATRI 862



 Score = 62.8 bits (152), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 51/290 (17%), Positives = 105/290 (36%), Gaps = 41/290 (14%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQID---------------------VDRSVGLV 45
           G ++E + S   G     AL++ G +V  ++                         V  V
Sbjct: 21  GQAAEFDYS---GTQACQALKEEGIEVVLVNSNPATIMTDKEIADKVYLEPLTAEFVEKV 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGL-------VQAILELLEIPYTHSGILASALSMDKMRSKQ 98
           +   +PD   ++L G  G+ GL        + IL+   +    + I +     D+   + 
Sbjct: 78  IEKERPD---SLLAGMGGQTGLNLAVELYEKGILDKYNVKVIGTSIESIKEGEDRELFRD 134

Query: 99  VVSSCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
           +++    PV  S ++      +     I  P +++P       G  +   ++ +   L  
Sbjct: 135 MMNRINQPVIQSEIITDLDAGIAFARKIGYPVIVRPAYTLGGTGGGIANNEEELIETLTS 194

Query: 157 SSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215
               +   Q+L+E+ V G  E+   VM D     +      +      +   + +S  V 
Sbjct: 195 GLQLSTIGQVLLEKSVKGWKEIEYEVMRD---SFSNCITVCNMENIDPVGIHTGDSIVVA 251

Query: 216 PAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           P++ +    Y+ ++  +     A+G  G     F  +P S +   +EIN 
Sbjct: 252 PSQTLSDKEYQMLRSASIDIINAVGIEGGCNVQFALNPHSFEYAVIEINP 301


>gi|168205836|ref|ZP_02631841.1| carbamoyl-phosphate synthase, large subunit [Clostridium
           perfringens E str. JGS1987]
 gi|170662675|gb|EDT15358.1| carbamoyl-phosphate synthase, large subunit [Clostridium
           perfringens E str. JGS1987]
          Length = 1067

 Score = 76.3 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 34/232 (14%), Positives = 87/232 (37%), Gaps = 19/232 (8%)

Query: 67  LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV--PVCPSILVNRFTMDSQHLI 124
            +   L+   IP   +      L+ D+ +   ++    +  P    +      +D    +
Sbjct: 644 KLAKFLKEKNIPTLGTTSDQIDLAEDREQFDDLLERLNIARPKGKGVWSLEEGLDEARRL 703

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
             P +++P       G+ +   ++ +   L  +   +  + +LI++Y+ G E+    + D
Sbjct: 704 GFPILVRPSFVLGGQGMEITHDEEELTYYLTNAFEKDSKNPILIDKYLMGREIEVDAISD 763

Query: 185 AS---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGC 240
                +      + ++  +S        +S  + PA  I   I ++V         +IG 
Sbjct: 764 GEDVLVPGIMEHLERAGVHS-------GDSITMYPAQNISDKIKEDVLDYTKKLALSIGI 816

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +G+    F+      K++ +E+N +   T     P ++  +G    ++   +
Sbjct: 817 KGMINIQFI--EFEGKLYVIEVNPRASRT----VPYISKVSGVPIVDIATRI 862



 Score = 61.7 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 51/290 (17%), Positives = 106/290 (36%), Gaps = 41/290 (14%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQID-------VDRSVGL--------------V 45
           G ++E + S   G     AL++ G +V  ++        D+ +                V
Sbjct: 21  GQAAEFDYS---GTQACQALKEEGIEVVLVNSNPATIMTDKEIADKVYLEPLTVEFVEKV 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGL-------VQAILELLEIPYTHSGILASALSMDKMRSKQ 98
           +   +PD   ++L G  G+ GL        + IL+   +    + I +     D+   + 
Sbjct: 78  IDKERPD---SLLAGMGGQTGLNLAVELYEKGILDKYNVKVIGTSIESIKEGEDRELFRD 134

Query: 99  VVSSCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
           +++    PV  S ++      +     I  P +++P       G  +   ++ +   L  
Sbjct: 135 MMNRINQPVIQSEIITDLDAGIAFARKIGYPVIVRPAYTLGGTGGGIANNEEELIETLTS 194

Query: 157 SSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215
               +   Q+L+E+ V G  E+   VM D            +      +   + +S  V 
Sbjct: 195 GLQLSTIGQVLLEKSVKGWKEIEYEVMRD---SFGNCITVCNMENIDPVGIHTGDSIVVA 251

Query: 216 PAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           P++ +    Y+ ++  +     A+G  G     F  +P S +   +EIN 
Sbjct: 252 PSQTLSDKEYQMLRSASIDIINAVGIEGGCNVQFALNPHSFEYAVIEINP 301


>gi|159185349|ref|NP_355659.2| pyruvate carboxylase [Agrobacterium tumefaciens str. C58]
 gi|159140602|gb|AAK88444.2| pyruvate carboxylase [Agrobacterium tumefaciens str. C58]
          Length = 1153

 Score = 76.3 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 77/221 (34%), Gaps = 18/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-L 112
            +H  +G   E            I +            +K+ ++ +  S  VPV P+   
Sbjct: 85  AIHPGYGLLSESPEFVEACNKAGITFIGPTPDTMRQLGNKVAARNLAISVDVPVVPATNP 144

Query: 113 VNRFTMDSQ---HLISPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSWNHGDQ 165
           +     + +     I  P ++K   GG   G+  I+K + +         ++ +    D+
Sbjct: 145 LPDDIAEVERMAEEIGYPVMLKASWGGGGRGMRAIRKKEDLAREVTEAKREAKAAFGKDE 204

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           + +E+ V+    +   ++GD   +V  +            K          PA  +    
Sbjct: 205 VYLEKLVERARHVESQILGDTHGNVVHLFERDCSIQRRNQK-----VVERAPAPYLSEAQ 259

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +E+   +     A    G    ++L D  + K +++E+N 
Sbjct: 260 RQELAAYSLKIAAATNYIGAGTVEYLMDADTGKFYFIEVNP 300


>gi|114321130|ref|YP_742813.1| carbamoyl-phosphate synthase large subunit [Alkalilimnicola
           ehrlichii MLHE-1]
 gi|114227524|gb|ABI57323.1| carbamoyl-phosphate synthase large subunit [Alkalilimnicola
           ehrlichii MLHE-1]
          Length = 1078

 Score = 76.3 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 49/278 (17%), Positives = 105/278 (37%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D +            ++V  +L   +PD    
Sbjct: 34  SGAQACKALREEGYRVILVNSNPATIMTDPETADAVYIEPIEWQTVARILEKERPDAVLP 93

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +    + +LE L I    +   A  ++ D+   ++ ++  G+    + +
Sbjct: 94  TMGGQTALNCALDLSREGVLERLGIEMIGANKEAIDMAEDRESFREAMARIGLETAHAEI 153

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     +D+Q  I  P +++P       G  +    +       +    +  ++LLIE+
Sbjct: 154 AHSMEEALDAQKRIGFPTIVRPSFTLGGSGGGIAYNREEFIEICERGLDLSPTNELLIEE 213

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            V G  E    V+ D + +   I   ++ D           +S  V PA+ +    Y+ +
Sbjct: 214 SVLGWKEYETEVVRDKADNCIIICFIENLDPMGVHT----GDSITVAPAQTLTDKEYQIM 269

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P   ++  +E+N 
Sbjct: 270 RDASLAVLREIGVETGGSNVQFAINPADGRMVVIEMNP 307



 Score = 62.4 bits (151), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 26/196 (13%), Positives = 72/196 (36%), Gaps = 8/196 (4%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--QHLISPPYV 129
           LE    P   +   +  L+ D+ R + +++  G+   P+               I  P V
Sbjct: 658 LEAAGAPIIGTTPDSIDLAEDRERFQGLINKLGLKQPPNRTARSADQALRLAAEIGYPLV 717

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  +  +   + ++   ++   +L+++++ D +E+    + D    
Sbjct: 718 VRPSYVLGGRAMDIVYGEDELLQYMHEAVRVSNDSPVLLDRFLDDAVEVDVDAICDGEDV 777

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           +    +   +       +S  ++  + P  +  D+   ++         +G  G+    F
Sbjct: 778 LIGGIMEHIEQAGV---HSGDSACSLPPYTLAPDVQDRLREQTRALALELGVVGLMNIQF 834

Query: 249 LFDPLSRKVFWLEINV 264
                   V+ LE+N 
Sbjct: 835 AIKGSD--VYLLEVNP 848


>gi|302186182|ref|ZP_07262855.1| carbamoyl-phosphate synthase subunit L [Pseudomonas syringae pv.
           syringae 642]
          Length = 649

 Score = 76.3 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 76/221 (34%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      +E   + +      A      K  +K ++   GVP+ P    
Sbjct: 81  AIHPGYGFLSENADFARAIEDAGLIFLGPPASAIDAMGSKSAAKALMEQAGVPLVPGYHG 140

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
               ++    +   I  P ++K   GG   G+ V++    +   L  +           +
Sbjct: 141 EAQDIETFRTAAERIGYPVLLKATAGGGGKGMKVVEHTGELAEALASAQREALSSFGDAR 200

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           +L+E+YV     +   V  D       +            K          PA  +   +
Sbjct: 201 MLVEKYVLAPRHVEIQVFADRRGHCLYLNERDCSIQRRHQK-----VVEEAPAPGLTGPL 255

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            K +   A  A QAIG  G    +FL D    + F++E+N 
Sbjct: 256 RKAMGEAAVKAAQAIGYVGAGTVEFLLDAR-GEFFFMEMNT 295


>gi|229156138|ref|ZP_04284236.1| Biotin carboxylase [Bacillus cereus ATCC 4342]
 gi|228627321|gb|EEK84050.1| Biotin carboxylase [Bacillus cereus ATCC 4342]
          Length = 445

 Score = 76.3 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 80/220 (36%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       +   I +             K+ S+  + +  VPV P I  
Sbjct: 77  AIHPGYGLLSENPSFPVRCKEEGIVFIGPSEEIITKMGSKIESRIAMQAADVPVVPGITT 136

Query: 114 N----RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
           N       ++    I  P ++K   GG  +G+ +++ +Q++         ++ ++    +
Sbjct: 137 NIETAEEAIEIAKQIGYPLMLKASAGGGGIGMQLMETEQTLTKAFESNKTRAQNFFGNGE 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+Y+ D   +   ++ D   +   +   +        K             +     
Sbjct: 197 MYLERYIADAHHIEIQLLADTHGNTVYLWERECSVQRRNQK----VIEEAPSPFLDEGTR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K +  +A  A +A+G       +FL D      ++LE+N 
Sbjct: 253 KAMGEVAVQAAKALGYTNAGTVEFLVDDQKN-FYFLEMNT 291


>gi|163853124|ref|YP_001641167.1| urea carboxylase [Methylobacterium extorquens PA1]
 gi|163664729|gb|ABY32096.1| urea carboxylase [Methylobacterium extorquens PA1]
          Length = 1176

 Score = 76.3 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 40/256 (15%), Positives = 85/256 (33%), Gaps = 30/256 (11%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      L    I +             K  ++++  + GVP+ P   +
Sbjct: 77  AVHPGYGFLSENVGFAERLAAEGIVFIGPRPEHLRAFGLKHTARELAKASGVPLLPGTDL 136

Query: 114 N---RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQL 166
                  + +   I  P ++K   GG  +G+ +    Q +                  ++
Sbjct: 137 LPDLETALSAAEAIGYPVMLKSTAGGGGIGMQLCHSAQELAERFAAVERTARASFGDARV 196

Query: 167 LIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIY 224
            +E++V     +   + GD    V  +           L+  +       PA  +   + 
Sbjct: 197 YLERFVAQARHVEVQIFGDGRGRVVALGE-----RDCSLQRRNQKVIEETPAPGLSDAVR 251

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI---FPEMAAYA 281
             +   A    +++        +F++DP      +LE+N +       +    P   A  
Sbjct: 252 ARLHAAAVALGESVAYASAGTVEFIYDPDREDFSFLEVNTR-------LQVEHPVTEAVF 304

Query: 282 GYSFRELLLWMVEDAS 297
           G    +L+ WMV  A+
Sbjct: 305 GI---DLVEWMVRQAA 317


>gi|116254736|ref|YP_770572.1| putative methylcrotonyl-CoA carboxylase alpha chain [Rhizobium
           leguminosarum bv. viciae 3841]
 gi|115259384|emb|CAK10519.1| putative methylcrotonyl-CoA carboxylase alpha chain [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 625

 Score = 76.3 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 40/225 (17%), Positives = 83/225 (36%), Gaps = 22/225 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      +E   I +  +   A      K  +K+++ + GVPV P  + 
Sbjct: 81  AIHPGYGFLSENADFAEAVEKAGIIWVGAPPAAIRAMGLKDAAKELMQASGVPVTPGYMG 140

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
              + +        I  P +IK + GG   G+  + + Q     L     ++++    D+
Sbjct: 141 ADQSEERLAAEAENIGYPVLIKAVAGGGGKGMRRVDRPQDFAELLASCRREAAAAFGDDR 200

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           +LIE+Y+ +   +   V  D   +               L+          PA  +    
Sbjct: 201 VLIERYIANPRHIEVQVFADMFGNCV-----HLFERDCSLQRRHQKVIEEAPAPGLEAAT 255

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR----KVFWLEINV 264
              +   A  A +A+   G    +F+ D        +++++E+N 
Sbjct: 256 RAVICDAAVKAARAVNYVGAGTVEFIADASEGLREDRIWFMEMNT 300


>gi|68484977|ref|XP_713627.1| likely multifunctional urea amidolyase [Candida albicans SC5314]
 gi|68485048|ref|XP_713590.1| likely multifunctional urea amidolyase [Candida albicans SC5314]
 gi|46435095|gb|EAK94485.1| likely multifunctional urea amidolyase [Candida albicans SC5314]
 gi|46435133|gb|EAK94522.1| likely multifunctional urea amidolyase [Candida albicans SC5314]
          Length = 1813

 Score = 76.3 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 39/285 (13%), Positives = 92/285 (32%), Gaps = 48/285 (16%)

Query: 19  GKACASALEDAGFKVSQI--DVDRSVGLVLAHLKPDLAFNVLHGN--------------- 61
                  L+  G K   +  D D+     L     D+A   LHG                
Sbjct: 627 AVRIIKTLKKLGVKSIAVYSDPDKYAQHSLMA---DVAIP-LHGTTAAETYINIEKVIKA 682

Query: 62  ---FGEDGLVQAI------------LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP 106
               G + ++                    I +      A      K  ++++    GVP
Sbjct: 683 AKESGAEAIIPGYGFLSENADFSDRCGKEGIVFVGPSGDAIRKLGLKHSAREIAEKAGVP 742

Query: 107 VCPSILVNRFTMDS---QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSS 159
           + P   + +   ++      +  P ++K   GG  +G+  +  ++ I         Q  S
Sbjct: 743 LVPGSGLVKDAKEARAIAAKLEYPIMVKSTAGGGGIGLQKVDSEKDIERVFETVQHQGKS 802

Query: 160 WNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
           +     + +E++V+    +   ++GD   +   +            K             
Sbjct: 803 YFGDSGVFLERFVENARHVEIQMLGDGYGNAIAVGERDCSLQRRNQKII----EETPAPN 858

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
           +P +   ++++ A     ++  +     ++++DP   + ++LE+N
Sbjct: 859 LPEETRNKMRKAAESLGSSMKYKCAGTVEYIYDPKRDEFYFLEVN 903


>gi|294055394|ref|YP_003549052.1| acetyl-CoA carboxylase, biotin carboxylase [Coraliomargarita
           akajimensis DSM 45221]
 gi|293614727|gb|ADE54882.1| acetyl-CoA carboxylase, biotin carboxylase [Coraliomargarita
           akajimensis DSM 45221]
          Length = 454

 Score = 76.3 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 76/220 (34%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+       E   I +      A     DK +++++     VPV P    
Sbjct: 77  AIHPGYGFLAENADFAEQCEKCNIKFVGPSSYAIINFGDKAKAREMAVKAKVPVIPGSEG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK----DQSIPLDLLQSSSWNHGDQ 165
            +      +     I  P +IK + GG   G+          +       ++ +      
Sbjct: 137 TVDNETDALKCAESIGFPVIIKAVAGGGGKGMRTAHNSASFKKEYNSARSEAEAAFGNGA 196

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE++++    +   V+GD   +V  +            K             I  D  
Sbjct: 197 VYIEKFLEAPRHIEIQVLGDQHGNVIHLGERDCSVQRRHQK----VVEEAPSPFISDDTR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +++ + A    +++   G    +FL D  ++  +++E+N 
Sbjct: 253 QKMGKDAVKLAKSVNYEGAGTIEFLMDE-NQNYYFIEMNT 291


>gi|169612854|ref|XP_001799844.1| hypothetical protein SNOG_09555 [Phaeosphaeria nodorum SN15]
 gi|160702598|gb|EAT82820.2| hypothetical protein SNOG_09555 [Phaeosphaeria nodorum SN15]
          Length = 733

 Score = 76.3 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 38/185 (20%), Positives = 70/185 (37%), Gaps = 14/185 (7%)

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMD----SQHLISPPYVIKPLKGGSSLGIIVI 144
           L+ D   SK +++  GVP  P    +    D        I  P ++K +KGG   G+ ++
Sbjct: 167 LTWDSE-SKDIMTKAGVPCIPGYHGSNQDPDYLKSEAAKIGYPVLLKAVKGGGGKGMRIV 225

Query: 145 KKDQSIPLDLLQSSSWNH----GDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDF 199
             +Q     L  + S        + +L+E+Y+     +   V  D   +   +       
Sbjct: 226 NTEQEFFDQLASAKSEARNSFGDEVMLVEKYITTPRHIEVQVFADKHGNCVALGERDCSI 285

Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
                K             +   I +++   A  A  A+G  G    +F+FD  S + F+
Sbjct: 286 QRRHQKIL----EESPAPHLQEHIRQDIWEKARQAALAVGYEGAGTVEFIFDNDSGEFFF 341

Query: 260 LEINV 264
           +E+N 
Sbjct: 342 MEMNT 346


>gi|259501992|ref|ZP_05744894.1| phosphoribosylaminoimidazole carboxylase [Lactobacillus antri DSM
           16041]
 gi|259170051|gb|EEW54546.1| phosphoribosylaminoimidazole carboxylase [Lactobacillus antri DSM
           16041]
          Length = 371

 Score = 76.3 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 40/207 (19%), Positives = 85/207 (41%), Gaps = 15/207 (7%)

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
           E+  + A+ ++ +  Y   G      + +++R K  +   G+   P   V       + +
Sbjct: 75  ENVDLNALKDVADQVYVPQGTHLLYTTKNRIREKTFLRDAGLQTAPFRAVKDAADLKRAV 134

Query: 124 --ISPPYVIKPLKGG-SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTC 179
             +  P V+K  +GG    G  V+  D     DL + +        ++E +V   +E + 
Sbjct: 135 AELGYPCVLKTCEGGYDGHGQEVLHSD----ADLAKCTGILSTRDAILEGWVPFELECSV 190

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
            V  + + +VT   V ++  +   L         ++PA+I  ++ K+ Q++A     AI 
Sbjct: 191 MVGRNENGEVTVFPVAENIHHDEIL------HISIIPARISPELQKKAQQMAVQIAHAID 244

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQP 266
            RGI   +        +++  E+  +P
Sbjct: 245 LRGILGVEMFV-GRDGEIYINELAPRP 270


>gi|217972030|ref|YP_002356781.1| carbamoyl-phosphate synthase L chain ATP-binding [Shewanella baltica
            OS223]
 gi|217497165|gb|ACK45358.1| Carbamoyl-phosphate synthase L chain ATP-binding [Shewanella baltica
            OS223]
          Length = 1517

 Score = 76.3 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 85/221 (38%), Gaps = 18/221 (8%)

Query: 57   VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
             LH   G   E     A+     + +    + +     +K  + +   +  VPV P    
Sbjct: 1018 ALHPGIGFLSESPQFAALCVNNGVNFVGPSVHSMTTMGNKSNAIKTSQAQNVPVVPGSHG 1077

Query: 111  -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI-----PLDLLQSSSWNHGD 164
             +      ++    I  P ++K ++GG   GI V+K+ + +           ++++ +GD
Sbjct: 1078 ILTNAEQAINVASEIGYPVLLKAVQGGGGKGIQVVKRPEDMIGLFQKTATEAAAAFGNGD 1137

Query: 165  QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
              L E+YV     +   ++ D   +   + +          K    + + +    +P ++
Sbjct: 1138 LYL-EKYVTSLRHIEVQLLRDKFGNAKVLGLRDCSVQRNNQKVVEESGSTM----LPDEL 1192

Query: 224  YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             K+V         A    G    +F+++  + +V+++E+N 
Sbjct: 1193 KKQVLAYTRALGDATDYMGAGTVEFIYNLDANEVYFMEMNT 1233


>gi|329730827|gb|EGG67205.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Staphylococcus
           aureus subsp. aureus 21193]
          Length = 451

 Score = 76.3 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 34/216 (15%), Positives = 83/216 (38%), Gaps = 15/216 (6%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-SILVNRFT 117
           +G   E+     + E  ++ +      +      K  +K  +    VPV P S  + +  
Sbjct: 81  YGFLAENADFAELCEACQLKFIGPSYQSIQKMGIKDVAKAEMIKANVPVVPGSDGLMKDV 140

Query: 118 MDSQHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS-----SWNHGDQLLIE 169
            +++ +   I  P +IK   GG   GI V + ++ +      +      ++ +G  L +E
Sbjct: 141 SEAKKIAKKIGYPVIIKATAGGGGKGIRVARDEKELETGFRMTEQEAQTAFGNGG-LYME 199

Query: 170 QYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           ++++    +   ++GD+  +V  +            +             +  +  +E+ 
Sbjct: 200 KFIENFRHIEIQIVGDSYGNVIHLGERDCTI----QRRMQKLVEEAPSPILDDETRREMG 255

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             A  A +A+        +F++D    K +++E+N 
Sbjct: 256 NAAVRAAKAVNYENAGTIEFIYDLNDNKFYFMEMNT 291


>gi|319944590|ref|ZP_08018858.1| acetyl-CoA carboxylase, biotin carboxylase [Lautropia mirabilis
           ATCC 51599]
 gi|319742127|gb|EFV94546.1| acetyl-CoA carboxylase, biotin carboxylase [Lautropia mirabilis
           ATCC 51599]
          Length = 451

 Score = 76.3 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 84/222 (37%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +      +  L  DK+ +K  +   GVPV P    
Sbjct: 77  AIHPGYGFLSENADFAEQVERSGFVFIGPRAASIRLMGDKVSAKDAMKQAGVPVVPGSDG 136

Query: 112 ---LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGD 164
                 +  ++    +  P +IK   GG   G+ V+  + S+   +     ++ +  +  
Sbjct: 137 ALPDDPKEIVEIARKVGYPVIIKAAGGGGGRGMRVVHDEASLLGSVATTRSEAQAAFNNG 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+Y++    +   V+ D   +   +            K          PA  +  +
Sbjct: 197 SVYMERYLENPRHIEIQVLADEHGNAIYLGERDCSMQRRHQK-----VIEEAPAPGVSRE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +  ++      A ++IG RG    +FL+   + + F++E+N 
Sbjct: 252 LIHKIGMRCVEACKSIGYRGAGTFEFLY--ENGEFFFIEMNT 291


>gi|163740889|ref|ZP_02148282.1| propionyl-CoA carboxylase, alpha subunit [Phaeobacter gallaeciensis
           2.10]
 gi|161385880|gb|EDQ10256.1| propionyl-CoA carboxylase, alpha subunit [Phaeobacter gallaeciensis
           2.10]
          Length = 681

 Score = 76.3 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 76/221 (34%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      L    + +    + A     DK+ SK++    GV   P  + 
Sbjct: 77  AVHPGYGFLSENAKFAEALAAEGVAFVGPPVGAIESMGDKITSKKIAQEAGVSTVPGYMG 136

Query: 114 NRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGD 164
                D      + I  P +IK   GG   G+ +   D              ++S+   D
Sbjct: 137 LIADADEAVKISNEIGYPVMIKASAGGGGKGMRIAWSDAEAREGFQSSKNEAANSFG-DD 195

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           ++ IE++V     +   V+ DA  +   +   +        K             +  D 
Sbjct: 196 RIFIEKFVTQPRHIEIQVLCDAHGNGIYLGERECSIQRRNQK----VVEEAPSPFLDEDT 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +   A    +A+G       +F+ D   +  ++LE+N 
Sbjct: 252 RRAMGEQAVALAKAVGYASAGTVEFIVDG-DKNFYFLEMNT 291


>gi|77456846|ref|YP_346351.1| acetyl-CoA carboxylase biotin carboxylase subunit [Pseudomonas
           fluorescens Pf0-1]
 gi|77380849|gb|ABA72362.1| acetyl-CoA carboxylase carboxyltransferase subunit alpha
           [Pseudomonas fluorescens Pf0-1]
          Length = 452

 Score = 76.3 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 39/222 (17%), Positives = 78/222 (35%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         L  DK+ +K  +   GVP  P    
Sbjct: 80  AIHPGYGFLAENADFAEQVENSGFAFIGPKAETIRLMGDKVSAKHAMIEAGVPTVPGSDG 139

Query: 112 LVNRFTMDSQHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGD 164
            +      +  +   +  P +IK   GG   G+ V+ K++ +         ++ +     
Sbjct: 140 PLPEDEETALRIGREVGYPVIIKAAGGGGGRGMRVVHKEEDLIASAKLTRSEAGAAFGNP 199

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+++     +   V+ D   +               L+          PA  I  +
Sbjct: 200 MVYLEKFLTNPRHVEVQVLSDGQGNAI-----HLGDRDCSLQRRHQKVLEEAPAPGIDEN 254

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             KEV      A   IG RG    +FL+   + + +++E+N 
Sbjct: 255 ARKEVLARCVKACIDIGYRGAGTFEFLY--ENGRFYFIEMNT 294


>gi|323483590|ref|ZP_08088975.1| hypothetical protein HMPREF9474_00724 [Clostridium symbiosum
           WAL-14163]
 gi|323690906|ref|ZP_08105198.1| acetyl-CoA carboxylase [Clostridium symbiosum WAL-14673]
 gi|323403146|gb|EGA95459.1| hypothetical protein HMPREF9474_00724 [Clostridium symbiosum
           WAL-14163]
 gi|323505031|gb|EGB20801.1| acetyl-CoA carboxylase [Clostridium symbiosum WAL-14673]
          Length = 450

 Score = 76.3 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 42/243 (17%), Positives = 91/243 (37%), Gaps = 22/243 (9%)

Query: 34  SQIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALS 90
           S +D++R +   +A +K D     +H  FG   E+     +     I +           
Sbjct: 59  SYLDMERIISATVA-MKAD----AIHPGFGFLSENARFAELCAKCNIKFIGPSADIINKM 113

Query: 91  MDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            +K  +++ +   GVPV P     +   +  +     +  P +IK   GG   G+ + + 
Sbjct: 114 GNKSEARKTMMEAGVPVVPGSKEPVYTAKEALVLAQSVGFPVMIKASSGGGGKGMRISRG 173

Query: 147 DQSIPL----DLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYS 201
            +          ++S      D + IE+Y++    +   ++ D+  +V  +         
Sbjct: 174 AEDFEANFNQAQMESVKGFSDDTMYIEKYIEQPRHIEFQILADSYGNVVHLGERDCSIQR 233

Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
              K             I  D+ + +   A  A +A+G       +FL D  +++ +++E
Sbjct: 234 RHQKVL----EESPSVAISDDLRRRMGETAVKAAKAVGYVNAGTIEFLLDK-NKEFYFME 288

Query: 262 INV 264
           +N 
Sbjct: 289 MNT 291


>gi|116054223|ref|YP_788667.1| acetyl-CoA carboxylase biotin carboxylase subunit [Pseudomonas
           aeruginosa UCBPP-PA14]
 gi|296386994|ref|ZP_06876493.1| acetyl-CoA carboxylase biotin carboxylase subunit [Pseudomonas
           aeruginosa PAb1]
 gi|313111876|ref|ZP_07797667.1| putative acyl-CoA carboxylase subunit [Pseudomonas aeruginosa
           39016]
 gi|115589444|gb|ABJ15459.1| putative acyl-CoA carboxylase subunit [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|310884169|gb|EFQ42763.1| putative acyl-CoA carboxylase subunit [Pseudomonas aeruginosa
           39016]
          Length = 458

 Score = 76.3 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 37/223 (16%), Positives = 82/223 (36%), Gaps = 25/223 (11%)

Query: 58  LHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
           +H  +G   E+      ++   + +            DK  +++   + GVPV P     
Sbjct: 81  IHPGYGFLSENPAFAEAVQAAGLVFVGPDAQTIRRMGDKAEARRTAMAAGVPVVPGSPGE 140

Query: 115 RFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGDQL 166
              +D+       +  P ++K   GG   GI +      +    P+   ++ +      +
Sbjct: 141 LDDLDAALACAEEVGYPLLVKASAGGGGRGIRIAHDADELRREFPIAQREAQAAFGSPAV 200

Query: 167 LIEQYVD-GIELTCGVMGDASLDVT----EIAVPKSDFYSYELKYSSLNSTHVLPAKIPL 221
            +E+++     +   ++GD    V     E ++ +     +E             A +  
Sbjct: 201 YLERFIRQARHIEVQILGDGERAVHLFERECSLQRRRQKVFE---------EAPSAALDG 251

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              + +   A    Q++G RG    ++LFD  S + F++E+N 
Sbjct: 252 AQRQALCESAVRLAQSLGYRGAGTLEYLFDAHSGEFFFIEMNT 294


>gi|325959933|ref|YP_004291399.1| ATP-grasp fold domain-containing protein [Methanobacterium sp.
           AL-21]
 gi|325331365|gb|ADZ10427.1| ATP-grasp fold domain protein, DUF201-type [Methanobacterium sp.
           AL-21]
          Length = 379

 Score = 76.3 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 39/197 (19%), Positives = 86/197 (43%), Gaps = 13/197 (6%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---FTMDSQHLISPPYVIKP 132
            IP   SG+ A+++  DK+++KQ      +       +++     + ++ L   P V+K 
Sbjct: 90  GIPVASSGVKAASICADKIKTKQFFVDNSIETPEFFKLSKNNNANLLTKLLSKSPVVLKQ 149

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192
             G    GI ++ K + +       + ++  D+ L E++++G E++  V+      +  +
Sbjct: 150 GSGQGGSGIKIVSKFEEVG------NYFDGFDETLAEKFLEGYEVSIEVLRWNGKTIPLV 203

Query: 193 AVPKSDFYS---YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
            V K        + LK        +      L+  +E++++A      +   G +  D +
Sbjct: 204 PVHKGKTTINGLHPLKKVKKAPLDIDGVDNDLN-NEEIRKIAIKIADTLNLEGTADIDLI 262

Query: 250 FDPLSRKVFWLEINVQP 266
           FD  + K + +EIN +P
Sbjct: 263 FDMKTGKNYVIEINARP 279


>gi|315150105|gb|EFT94121.1| pyruvate carboxylase [Enterococcus faecalis TX0012]
          Length = 1152

 Score = 76.3 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 94/278 (33%), Gaps = 29/278 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59
           +A+     ++E E S+   KA  + L   G K  +  +D  ++  +      D     +H
Sbjct: 38  VAI----YAAEDEYSVHRFKADEAYLVGKGKKPIEAYLDIENIIQIAKKSGAD----AIH 89

Query: 60  GNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----IL 112
             +G   E+       E   I +         +  DK+++K+   + GV   P     + 
Sbjct: 90  PGYGFLSENLRFAERCEEEGIIFVGPKTHHLDIFGDKIKAKEAAVAAGVASIPGSDGPVA 149

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGDQLLI 168
                +        P +IK   GG   G+ V    +           ++ +    D++ +
Sbjct: 150 TVEEVVAFGETHGFPIMIKAALGGGGRGMRVAHDAKEAREGYERAKSEAKAAFGSDEVYV 209

Query: 169 EQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKE 226
           E+Y+ +   +   ++GD   +V              ++        V P   +  +    
Sbjct: 210 EKYISNPKHIEVQILGDHHGNVL-----HLFERDCSVQRRHQKVVEVAPCVSMNEEQRAA 264

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +   A      +G       +FL      + +++E+N 
Sbjct: 265 ICSAAVQLMAHVGYVNAGTVEFLV--EGDQFYFIEVNP 300


>gi|241554145|ref|YP_002979358.1| acetyl-CoA carboxylase, biotin carboxylase [Rhizobium leguminosarum
           bv. trifolii WSM1325]
 gi|240863451|gb|ACS61113.1| acetyl-CoA carboxylase, biotin carboxylase [Rhizobium leguminosarum
           bv. trifolii WSM1325]
          Length = 461

 Score = 76.3 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 40/217 (18%), Positives = 79/217 (36%), Gaps = 18/217 (8%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRF 116
           +G   E+      +E   + +      + A+  DK+ +K+ + + GVP  P     +   
Sbjct: 93  YGFLSENAAFADAIEKAGLTFIGPTASSIAIMGDKIAAKRAMMAAGVPCVPGPDTALPDD 152

Query: 117 TMDSQHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG----DQLLIE 169
               + +   I  P +IK   GG   G+ V+ K   +   +  +            L IE
Sbjct: 153 PATIERIALEIGYPVIIKAAGGGGGRGMRVVPKADLLHEAIALTREEARKAFGSPSLYIE 212

Query: 170 QYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
           ++++    +   V+ D   +   +           ++          PA  I  DI + V
Sbjct: 213 KFLEHPRHIEIQVICDDHGNAVWL-----GHRDCSMQRRHQKVVEEAPAPGIAPDIIQPV 267

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
                 A   IG RG+   +FL+       +++E+N 
Sbjct: 268 GLACVKACLQIGYRGVGTFEFLY--EDGAFYFIEMNT 302


>gi|237747106|ref|ZP_04577586.1| pyruvate carboxylase [Oxalobacter formigenes HOxBLS]
 gi|229378457|gb|EEO28548.1| pyruvate carboxylase [Oxalobacter formigenes HOxBLS]
          Length = 1243

 Score = 76.3 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 40/223 (17%), Positives = 91/223 (40%), Gaps = 22/223 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---- 109
            +H  +G   ED L   + E   I +  +   A     +K++++ +    GVPV P    
Sbjct: 96  AMHPGWGFASEDMLFPKLAEEAGITFIGASADAMYKLGNKVQARIIARKVGVPVVPGSDD 155

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
           S+ V++     +  I  P ++K   GG   GI ++   + +    +++S+         +
Sbjct: 156 SVDVDQARAIIKE-IGLPIMLKAEGGGGGRGIFLVTNQEELEDAFMKASAMAQASFGNPR 214

Query: 166 LLIEQYVDGI-ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK---IPL 221
           L +E+Y+  +  +   V+ D         V   D     ++ ++     + P+    I  
Sbjct: 215 LFVEKYLPNVHHIEIQVIADR-----WGNVFAFDERDCTVQRNNQKLIEITPSPWKGITP 269

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           ++ ++++  A     A+G   ++  +FL        + +E+N 
Sbjct: 270 ELREQLKEYARRMVLAVGYHSVATVEFLVTE-DSTPYMIEVNT 311


>gi|228902453|ref|ZP_04066607.1| Pyruvate carboxylase [Bacillus thuringiensis IBL 4222]
 gi|228857197|gb|EEN01703.1| Pyruvate carboxylase [Bacillus thuringiensis IBL 4222]
          Length = 1148

 Score = 76.3 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 31/243 (12%), Positives = 83/243 (34%), Gaps = 21/243 (8%)

Query: 35  QIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSM 91
            ID    +  ++   K +   + +H  +G   E+       E   I +         +  
Sbjct: 62  PIDAYLDIEGIIEIAKSNHV-DAIHPGYGFLSENIQFAKRCEEEGIIFIGPKSKHLDMFG 120

Query: 92  DKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147
           DK++++       +PV P     +               P +IK   GG   G+ +++  
Sbjct: 121 DKVKARTQAQLAQIPVIPGSDGPVDSLEEVEKFAEKYDYPIIIKASLGGGGRGMRIVRTS 180

Query: 148 QSIPL----DLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSY 202
           + +         ++ +    D++ +E++V+    +   ++ D   +V  +          
Sbjct: 181 EELGESYNRAKSEAKAAFGNDEVYVEKFVEKPKHIEVQILADEEGNVAHLYE-----RDC 235

Query: 203 ELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
            ++        + P   +  D+ + +   A    + +        +FL      + +++E
Sbjct: 236 SVQRRHQKVVEIAPSVSLSDDLRQRICDAAVKLTKNVNYLNAGTVEFLV--KDDEFYFIE 293

Query: 262 INV 264
           +N 
Sbjct: 294 VNP 296


>gi|221122546|ref|XP_002162947.1| PREDICTED: similar to predicted protein, partial [Hydra
           magnipapillata]
          Length = 559

 Score = 76.3 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 28/198 (14%), Positives = 72/198 (36%), Gaps = 16/198 (8%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI--LVNRFTMDSQ--HLISPPYVIK 131
            I +         +  DK+++++   +  +PV P     V +    +        P ++K
Sbjct: 146 GIKFIGPSPEVLYMMGDKIQARKAAIANNIPVVPGTDSPVKKIDEVAAFCEKYGYPVILK 205

Query: 132 PLKGGSSLGIIVIKKDQSIP----LDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDAS 186
              GG   G+ V++    +P    L   ++++      + +E++++    +   ++GD  
Sbjct: 206 AAYGGGGRGMRVVRNKDELPKMFELATSEATAAFGDGSMFVEKFIESPRHIEVQIIGDHY 265

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE-VQRLAFLAHQAIGCRGISR 245
             V              ++        + PA +  +  +  +   A    +A+       
Sbjct: 266 GSVV-----HLFERDCSVQRRHQKVIEIAPAPLLNEKTRRTLTECAVRLCKAVNYGNAGT 320

Query: 246 SDFLFDPLSRKVFWLEIN 263
            +FL D      +++E+N
Sbjct: 321 VEFLLDENGNH-YFIEVN 337


>gi|167647113|ref|YP_001684776.1| carbamoyl-phosphate synthase subunit L [Caulobacter sp. K31]
 gi|167349543|gb|ABZ72278.1| Carbamoyl-phosphate synthase L chain ATP-binding [Caulobacter sp.
           K31]
          Length = 657

 Score = 76.3 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 88/227 (38%), Gaps = 26/227 (11%)

Query: 57  VLHGNFG---EDGLV-QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            +H  +G   E+    QA+++   + +      A      K  +K+++ + GVP  P  L
Sbjct: 77  AIHPGYGFLSENADFAQAVID-AGLIWIGPPPSAIRAMGLKDAAKKLMIAAGVPTTPGYL 135

Query: 113 -----VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHG 163
                V R   ++   I  P +IK + GG   G+  ++K +     L     ++S+    
Sbjct: 136 GEDQSVERLAAEAAK-IGFPVLIKAVAGGGGKGMRKVEKAEDFAALLASCQREASASFGD 194

Query: 164 DQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPL 221
             +L+E+YV     +   V GD+  +V              L+          PA  +  
Sbjct: 195 QHVLLEKYVTRPRHIEVQVFGDSHGNVV-----HLFERDCSLQRRHQKVIEEAPAPGMDE 249

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR----KVFWLEINV 264
                V   A  A QA+G  G    +F+ D        +++++E+N 
Sbjct: 250 ATRAAVCGAAVKAAQAVGYVGAGTVEFIADASEGLRADRIWFMEMNT 296


>gi|23466088|ref|NP_696691.1| JadJ [Bifidobacterium longum NCC2705]
 gi|227546422|ref|ZP_03976471.1| biotin carboxylase [Bifidobacterium longum subsp. infantis ATCC
           55813]
 gi|312133815|ref|YP_004001154.1| acetyl/propionyl-CoA carboxylase alpha subunit [Bifidobacterium
           longum subsp. longum BBMN68]
 gi|322691921|ref|YP_004221491.1| propionyl-CoA carboxylase alpha subunit [Bifidobacterium longum
           subsp. longum JCM 1217]
 gi|23326818|gb|AAN25327.1| JadJ [Bifidobacterium longum NCC2705]
 gi|227213079|gb|EEI80958.1| biotin carboxylase [Bifidobacterium longum subsp. infantis ATCC
           55813]
 gi|290769670|gb|ADD61449.1| putative protein [uncultured organism]
 gi|291516507|emb|CBK70123.1| Acetyl/propionyl-CoA carboxylase, alpha subunit [Bifidobacterium
           longum subsp. longum F8]
 gi|311773102|gb|ADQ02590.1| Acetyl/propionyl-CoA carboxylase alpha subunit [Bifidobacterium
           longum subsp. longum BBMN68]
 gi|320456777|dbj|BAJ67399.1| propionyl-CoA carboxylase alpha subunit [Bifidobacterium longum
           subsp. longum JCM 1217]
          Length = 654

 Score = 76.3 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 42/219 (19%), Positives = 80/219 (36%), Gaps = 15/219 (6%)

Query: 56  NVLHGNFGEDGLVQAI---LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
           N +H  +G    V +    +E     +      A     DK+ +++V     VP  P   
Sbjct: 79  NAVHPGYGFLSEVPSFAQKVEDAGAIWVGPHHTALVDLGDKITARRVALRAKVPPVPGLS 138

Query: 111 --ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD--QL 166
             +   R  +D  H    P ++K   GG   GI V+  D+ +    +   +   GD  + 
Sbjct: 139 EPVTDVRTLLDFAHTHGYPIMMKRTDGGGGHGITVVHDDEELRRFYMNHDALQGGDLKEY 198

Query: 167 LIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
            IE++VD    +      D+  + T  +           K             +  +I  
Sbjct: 199 FIEKFVDKARHVETQSGRDSHGNFTVYSTRDCSLQRRNQK----LVEEAPAPFLSEEIIS 254

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            ++  +      +G  G+   +F+  P + KV++LE+N 
Sbjct: 255 TLEEYSRRLFTTVGYVGLGTCEFMVTP-NGKVYFLEVNP 292


>gi|52142953|ref|YP_083876.1| acetyl-CoA carboxylase biotin carboxylase subunit [Bacillus cereus
           E33L]
 gi|51976422|gb|AAU17972.1| propionyl-CoA carboxylase [Bacillus cereus E33L]
          Length = 445

 Score = 76.3 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 80/220 (36%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       +   I +             K+ S+  + +  VPV P I  
Sbjct: 77  AIHPGYGLLSENPSFPVRCKEEGIVFIGPSEEIITKMGSKIESRIAMQAADVPVVPGITT 136

Query: 114 N----RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
           N       ++    I  P ++K   GG  +G+ +++ +Q++         ++ ++    +
Sbjct: 137 NIETAEEAIEIAKQIGYPLMLKASAGGGGIGMQLMETEQTLTKAFESNKTRAQNFFGNGE 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+Y+ D   +   ++ D   +   +   +        K             +     
Sbjct: 197 MYLERYIADAHHIEIQLLADTHGNTVYLWERECSVQRRNQK----VIEEAPSPFLDEGTR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K +  +A  A +A+G       +FL D      ++LE+N 
Sbjct: 253 KAMGEVAVQAAKALGYTNAGTVEFLVDDQKN-FYFLEMNT 291


>gi|56964160|ref|YP_175891.1| pyruvate carboxylase [Bacillus clausii KSM-K16]
 gi|56910403|dbj|BAD64930.1| pyruvate carboxylase [Bacillus clausii KSM-K16]
          Length = 1149

 Score = 76.3 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 32/243 (13%), Positives = 88/243 (36%), Gaps = 20/243 (8%)

Query: 35  QIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSM 91
            ID    +  ++A  K     + +H  +G   E+       +   + +    +    +  
Sbjct: 62  PIDAYLDIEDIIATAKAHDV-DAIHPGYGFLSENIEFARRCQEEGLIFVGPELEHLRMFG 120

Query: 92  DKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147
           DK+++++     G+PV P     +               P++IK   GG   G+ +++++
Sbjct: 121 DKIQAREQALKAGLPVIPGSDGPVASLEEVQAFADEHGYPFIIKASLGGGGRGMRIVREE 180

Query: 148 ----QSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSY 202
               +S      ++ S    D++ +E++V+    +   ++ D   ++  +          
Sbjct: 181 KDVKESYERAKSEAKSAFGNDEVYVEKFVERPKHIEVQILADKHGNIVHLYE-----RDC 235

Query: 203 ELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
            ++        + P   +  ++   +   A    + +G       +FL        +++E
Sbjct: 236 SVQRRHQKVVEIAPSVSLSDEVRTNICDAAVNLMKNVGYVNAGTVEFLVT-DDGTFYFIE 294

Query: 262 INV 264
           +N 
Sbjct: 295 VNP 297


>gi|86133850|ref|ZP_01052432.1| pyruvate carboxylase [Polaribacter sp. MED152]
 gi|85820713|gb|EAQ41860.1| pyruvate carboxylase [Polaribacter sp. MED152]
          Length = 1150

 Score = 76.3 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 37/243 (15%), Positives = 87/243 (35%), Gaps = 24/243 (9%)

Query: 35  QIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSM 91
            +D+D ++  V      D     +H  +G   E+       E  +I +    +       
Sbjct: 62  YLDID-AIIKVAKDNGVD----AIHPGYGFLSENANFAQKCEENDIIFVGPKVSVLKSLG 116

Query: 92  DKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147
           DK+ +K+V     +P+  S    +      ++    I  P ++K   GG   G+ VI+K 
Sbjct: 117 DKITAKKVAIDNNIPIIKSNKNPLESIEIALEEAEKIGYPIMLKAASGGGGRGMRVIRKA 176

Query: 148 QSIPLDL----LQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSY 202
             +         ++ +    D + +E++V+    +   ++ D     +            
Sbjct: 177 DELKKAYGESKREALNAFGDDTVFLEKFVENPKHIEIQIVAD-----SFGNTVHLFERDC 231

Query: 203 ELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
            ++          P+  +  +    + + A    +A+    I   +FL D     ++++E
Sbjct: 232 SVQRRYQKVIEFAPSYGLKQETKDALYKYAIDICKAVNYNNIGTVEFLVD-DDDSIYFIE 290

Query: 262 INV 264
           +N 
Sbjct: 291 VNP 293


>gi|299740213|ref|XP_001838959.2| carboxylase:pyruvate/acetyl-CoA/propionyl-CoA [Coprinopsis cinerea
           okayama7#130]
 gi|298404139|gb|EAU82890.2| carboxylase:pyruvate/acetyl-CoA/propionyl-CoA [Coprinopsis cinerea
           okayama7#130]
          Length = 648

 Score = 76.3 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 42/217 (19%), Positives = 85/217 (39%), Gaps = 15/217 (6%)

Query: 58  LHGNFG---EDGLVQAILELLEIP--YTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
           +H  +G   E+  +   L  L  P  +      A  L+ DKM S+++ +S GV + P   
Sbjct: 56  VHPGYGFLSENPSLPEALASLSPPVVFIGPSKEALRLAGDKMLSRELSTSLGVQIAPGTH 115

Query: 113 VNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           V      +     I  P +IK L GG   GI V+  +  +     +    +   Q+  E+
Sbjct: 116 VKSAADVLGFGKEIGYPVMIKALDGGGGRGIRVVNSETEVEEAFKRCLGESPSKQVFAEK 175

Query: 171 YVDG---IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227
            + G     +   ++GD +  V  +   +       ++        V P+++   + + +
Sbjct: 176 ALTGPGWKHIEVQIIGDGTGSVNHLWERE-----CSVQRRFQKVVEVAPSRLSRAMVQPL 230

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              +    + +   G+   ++L D  +    +LEIN 
Sbjct: 231 LDASITIARHLKYHGLGTFEYLVDAKTGNWVFLEINP 267


>gi|253681252|ref|ZP_04862050.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Clostridium
           botulinum D str. 1873]
 gi|253562490|gb|EES91941.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Clostridium
           botulinum D str. 1873]
          Length = 447

 Score = 76.3 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 81/220 (36%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  FG   E+     +     I +    I       +K ++++++    VP+ P    
Sbjct: 77  AIHPGFGFLSENSKFAQMCNDCNIVFIGPDIDTMNNMGNKSKAREIMLKAKVPIIPGTEG 136

Query: 114 N----RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGDQ 165
           N    +  +     I  P +IK   GG   GI +++  + +         ++        
Sbjct: 137 NVDTVKDALKEAERIGYPVMIKAAAGGGGRGIRIVRTSEELGKMFETAKREAEVAFGDGS 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E++++    +   ++GD   +V  +            K             +  ++ 
Sbjct: 197 MYMEKFIENPRHVEFQILGDNYGNVVHLGERDCSIQRRNQKVL----EETPCPIMTEELR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K++  +A  A +A+  +G    +FL D      +++E+N 
Sbjct: 253 KKMGLVAVKAAKAVNYKGAGTIEFLLDNK-GDFYFMEMNT 291


>gi|315499039|ref|YP_004087843.1| carbamoyl-phosphate synthase l chain ATP-binding protein
           [Asticcacaulis excentricus CB 48]
 gi|315417051|gb|ADU13692.1| Carbamoyl-phosphate synthase L chain ATP-binding protein
           [Asticcacaulis excentricus CB 48]
          Length = 574

 Score = 76.3 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 39/204 (19%), Positives = 75/204 (36%), Gaps = 21/204 (10%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT----MDSQHLISPPYVIK 131
            I +      A      K  +K ++   GVPV P            + +   I  P +IK
Sbjct: 100 GIVFVGPTPEAIRAMALKGAAKALMEGAGVPVTPGYHAEAQDETILLTAAREIGFPVLIK 159

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQS-----SSWNHGDQLLIEQYVD-GIELTCGVMGDA 185
            + GG   G+  +  +   P  L        S++    ++LIE+Y++    +   +  D+
Sbjct: 160 AVAGGGGKGMRRVDNESDFPELLKSCQGEGQSAFG-DPRVLIEKYIEVPRHIEIQLFADS 218

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGIS 244
             +   +           L+          PA  +P  + + + + A  A +AIG RG  
Sbjct: 219 HGNALHLYE-----RDCSLQRRHQKVIEEAPAPGLPEAMRQAMGKAAVTAAKAIGYRGAG 273

Query: 245 RSDFLFDPLSR----KVFWLEINV 264
             +F+ D          +++E+N 
Sbjct: 274 TIEFIVDVSKGIAQAAFYFMEMNT 297


>gi|222150979|ref|YP_002560132.1| pyruvate carboxylase [Macrococcus caseolyticus JCSC5402]
 gi|222120101|dbj|BAH17436.1| pyruvate carboxylase [Macrococcus caseolyticus JCSC5402]
          Length = 1140

 Score = 76.3 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 77/221 (34%), Gaps = 19/221 (8%)

Query: 56  NVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
           N +H  +G   E+          +I +    +    +  DK++++      G+PV P   
Sbjct: 78  NAIHPGYGFLSENQQFAVRCAQEDIIFIGPEVRHLDMFGDKIKARNTAIQAGLPVIPGTK 137

Query: 113 VNRFTMDSQHLI---SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG----DQ 165
                +D          P +IK L GG   G+ +++  + +   + ++ S         +
Sbjct: 138 DAIKGLDEAVQFAHDKYPVMIKALSGGGGKGMRIVRNAEELEEAISRAQSEAMKSFGSSE 197

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDI 223
           + IEQY+D    +   ++GD   ++              ++        V P   +   +
Sbjct: 198 IYIEQYIDAPKHIEVQIIGDKFGNIV-----HLFERDCSVQRRHQKVVEVAPSVGLSDTV 252

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              +   A    Q I        +FL        +++E+N 
Sbjct: 253 RMNICNAAVDLMQQISYVNAGTVEFLV--QGEDFYFIEVNP 291


>gi|86605556|ref|YP_474319.1| acetyl-CoA carboxylase biotin carboxylase subunit [Synechococcus
           sp. JA-3-3Ab]
 gi|86554098|gb|ABC99056.1| acetyl-CoA carboxylase, biotin carboxylase [Synechococcus sp.
           JA-3-3Ab]
          Length = 451

 Score = 76.3 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 77/220 (35%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     +     + +      A     DK  +++ + + GVP  P    
Sbjct: 79  AIHPGYGFLAENAKFAEMCADHNLIFIGPSPEAMRKMADKATARETMQAVGVPTVPGSRG 138

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL----DLLQSSSWNHGDQ 165
            I  +   +     I  P +IK   GG   G+ V +  Q +         ++ +      
Sbjct: 139 LITSDEEAVRLAEKIGYPVIIKATAGGGGRGMRVARDAQELLKMMRTAQGEAQAAFGDGG 198

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+Y++    +   ++ D+  +V  +            K             +   + 
Sbjct: 199 IYLEKYIERPRHVEFQILADSHGNVVHLYERDCSIQRRHQKLL----EEAPSPALTTSLR 254

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +   A  A +A+   G    +FL D  + + +++E+N 
Sbjct: 255 ARMGAAAVKAAKAVNYVGAGTVEFLLDK-NGQFYFIEMNT 293


>gi|312961761|ref|ZP_07776259.1| carbamoyl-phosphate synthase L chain, ATP-binding [Pseudomonas
           fluorescens WH6]
 gi|311284020|gb|EFQ62603.1| carbamoyl-phosphate synthase L chain, ATP-binding [Pseudomonas
           fluorescens WH6]
          Length = 641

 Score = 76.3 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 41/220 (18%), Positives = 78/220 (35%), Gaps = 19/220 (8%)

Query: 58  LHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
           +H  +G   E+      +E   + +      A      K  +K ++ + GVP+ P     
Sbjct: 80  IHPGYGFLSENAAFARAIESAGLIFLGPPASAIDAMGSKSAAKALMETAGVPLVPGYHGE 139

Query: 115 RFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQL 166
              ++    +   I  P ++K   GG   G+ V++    +   L  +           Q+
Sbjct: 140 AQDLETFREACARIGYPVLLKATAGGGGKGMKVVEHVDQLAEALASAQREALSSFGNGQM 199

Query: 167 LIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIY 224
           L+E+Y +    +   V  D       +            K          PA  + ++  
Sbjct: 200 LVEKYLLKPRHVEIQVFADQHGHCLYLNERDCSIQRRHQK-----VVEEAPAPGLSVEQR 254

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +   A  A QAIG  G    +FL D    + F++E+N 
Sbjct: 255 RAMGEAAVRAAQAIGYVGAGTVEFLLDAR-GEFFFMEMNT 293


>gi|229178866|ref|ZP_04306226.1| Biotin carboxylase [Bacillus cereus 172560W]
 gi|228604631|gb|EEK62092.1| Biotin carboxylase [Bacillus cereus 172560W]
          Length = 445

 Score = 76.3 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 80/220 (36%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       +   I +             K+ S+  + +  VPV P I  
Sbjct: 77  AIHPGYGLLSENPSFPVRCKEEGIVFIGPSEEIITKMGSKIESRIAMQAADVPVVPGITT 136

Query: 114 N----RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
           N       ++    I  P ++K   GG  +G+ +++ +Q++         ++ ++    +
Sbjct: 137 NIETAEEAIEIAKQIGYPLMLKASAGGGGIGMQLMETEQTLTKAFESNKTRAQNFFGNGE 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+Y+ D   +   ++ D   +   +   +        K             +     
Sbjct: 197 MYLERYIADAHHIEIQLLADTHGNTVYLWERECSVQRRNQK----VIEEAPSPFLDEGTR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K +  +A  A +A+G       +FL D      ++LE+N 
Sbjct: 253 KAMGEVAVQAAKALGYTNAGTVEFLVDDQKN-FYFLEMNT 291


>gi|225025423|ref|ZP_03714615.1| hypothetical protein EIKCOROL_02321 [Eikenella corrodens ATCC
           23834]
 gi|224941707|gb|EEG22916.1| hypothetical protein EIKCOROL_02321 [Eikenella corrodens ATCC
           23834]
          Length = 459

 Score = 76.3 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 81/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+      +E     +         L  DK+ +K+ +   GVP  P    
Sbjct: 77  AIHPGYGFLAENDRFAEQVEESGFIFIGPRADTIRLMGDKVSAKKAMLESGVPCVPGSDG 136

Query: 111 ILVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
            L +     + +   +  P +IK   GG   G+ V++K + +   +     ++ +     
Sbjct: 137 ALPDDPDEILKTAERVGYPVIIKASGGGGGRGMRVVEKREDLIKAVEMTKAEAEAAFGNP 196

Query: 165 QLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+++     +   V+ D   +   +            K          PA  I   
Sbjct: 197 MVYMERFLQRPRHVEVQVLADEHGNAIYLGERDCSMQRRHQK-----VIEEAPAPGITAK 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +++ +    A + IG RG    +FL+     + F++E+N 
Sbjct: 252 EREKIGKACVAACKRIGYRGAGTFEFLY--EDGEFFFIEMNT 291


>gi|254481069|ref|ZP_05094315.1| acetyl-CoA carboxylase, biotin carboxylase [marine gamma
           proteobacterium HTCC2148]
 gi|214038864|gb|EEB79525.1| acetyl-CoA carboxylase, biotin carboxylase [marine gamma
           proteobacterium HTCC2148]
          Length = 448

 Score = 76.3 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 79/222 (35%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+      +E     +         L  DK+ + + +   GVP  P    
Sbjct: 79  AIHPGYGFLAENADFAEQVEKSGFTFIGPTADTIRLMGDKVSAIKSMKRSGVPTVPGSDG 138

Query: 111 --ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGD 164
                +  T +    +  P ++K   GG   G+ V+  ++ +   +     ++++    D
Sbjct: 139 PLTDDHDRTKEIALRVGYPIIVKAAAGGGGRGMRVVHNEEVLISSIEVTKSEAAAAFGSD 198

Query: 165 QLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+++     +   ++ D   +               L+          PA  IP D
Sbjct: 199 VVYLEKFLQKPRHVEVQIIADGQGNAI-----HLGDRDCSLQRRHQKVLEEAPAPGIPED 253

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +  +V      A   IG RG    +FL+       +++E+N 
Sbjct: 254 LRAQVAEACVNACIEIGYRGAGTFEFLY--EDGGFYFIEMNT 293


>gi|15644998|ref|NP_207168.1| biotin carboxylase [Helicobacter pylori 26695]
 gi|2313468|gb|AAD07434.1| biotin carboxylase (accC) [Helicobacter pylori 26695]
          Length = 458

 Score = 76.3 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 37/225 (16%), Positives = 77/225 (34%), Gaps = 14/225 (6%)

Query: 49  LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
            + D  F   +G   E+     I     + +        AL  DK ++K V+   G+PV 
Sbjct: 87  FEADAIFPG-YGFLSENQNFVEICSHHSLEFIGPSAKVMALMSDKSKAKSVMKEAGMPVI 145

Query: 109 PS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSW 160
                 +   +   +    I  P +IK   GG   G+ V+     +         ++ S 
Sbjct: 146 EGSDGLLKSYQEAEEIADKIGYPVIIKAAAGGGGRGMRVVGDKSKLKNLYLAAETEALSA 205

Query: 161 NHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI 219
                + +E+++     +   ++ D   +V  +          + K             +
Sbjct: 206 FGDGSVYLEKFINKPKHIEVQILADKHGNVIHVGERDCSVQRRQQKLI----EETPAVVL 261

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              + + +   A  A + IG  G    +FL D   +  +++E+N 
Sbjct: 262 EEGVRERLLETAIKAAKYIGYVGAGTFEFLLDSNMKDFYFMEMNT 306


>gi|17547506|ref|NP_520908.1| acetyl-CoA carboxylase biotin carboxylase subunit [Ralstonia
           solanacearum GMI1000]
 gi|17429809|emb|CAD16494.1| probable biotin carboxylase protein [Ralstonia solanacearum
           GMI1000]
          Length = 456

 Score = 76.3 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 81/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H  +G   E+      +E     +         L  DK+ +KQ +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAERVEQSGFTFIGPTPDCIRLMGDKVSAKQAMIKSGVPCVPGSEG 136

Query: 113 ----VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
                 +  + +   +  P +IK   GG   G+ V+  + ++   +     ++       
Sbjct: 137 ALPDDPKEILATARKVGYPVIIKAAGGGGGRGMRVVHTEAALINAVNMTREEAGRAFGNP 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
           ++ +E++++    +   V+ D   +   +            K          PA  IP  
Sbjct: 197 EVYMEKFLENPRHVEIQVLADQHRNAIWLGERDCSMQRRHQK-----VIEEAPAPHIPRR 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + + +      A + IG RG    +FL+   + + +++E+N 
Sbjct: 252 LIERIGDRCADACKKIGYRGAGTFEFLY--ENGEFYFIEMNT 291


>gi|145222472|ref|YP_001133150.1| pyruvate carboxylase [Mycobacterium gilvum PYR-GCK]
 gi|315442917|ref|YP_004075796.1| acetyl/propionyl-CoA carboxylase, subunit alpha [Mycobacterium sp.
           Spyr1]
 gi|145214958|gb|ABP44362.1| Pyruvate carboxylase [Mycobacterium gilvum PYR-GCK]
 gi|315261220|gb|ADT97961.1| acetyl/propionyl-CoA carboxylase, alpha subunit [Mycobacterium sp.
           Spyr1]
          Length = 662

 Score = 76.3 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 41/209 (19%), Positives = 81/209 (38%), Gaps = 25/209 (11%)

Query: 67  LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP 126
            VQ      E+ +    + A A    K+ +K+++++ GVPV     ++    D+      
Sbjct: 91  AVQG----AELTWIGPPVAAVAAMGSKIEAKKMMAAAGVPV-----LDELDPDAVTAAML 141

Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQLLIEQYVD-GIELTCGV 181
           P +IK   GG   G+ ++++   +P+ +  +            +  E+Y+D G  +   V
Sbjct: 142 PVLIKASAGGGGRGMRIVRELAELPIQVAAARREAQSAFGDPTVFCERYLDAGHHVEVQV 201

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI---PLDIYKEVQRLAFLAHQAI 238
           M DA   V  +   +        K          P+ +      + + +   A LA +AI
Sbjct: 202 MADAHGTVWALGERECSIQRRHQK-----IIEEAPSPLVERTPGMRERLFDAARLAAEAI 256

Query: 239 GCRGISRSDFLFD---PLSRKVFWLEINV 264
           G  G    +F+           ++LE+N 
Sbjct: 257 GYTGAGTVEFMASGQGEPGGSFYFLEMNT 285


>gi|115525440|ref|YP_782351.1| carbamoyl-phosphate synthase L chain, ATP-binding [Rhodopseudomonas
           palustris BisA53]
 gi|115519387|gb|ABJ07371.1| Carbamoyl-phosphate synthase L chain, ATP-binding protein
           [Rhodopseudomonas palustris BisA53]
          Length = 670

 Score = 76.3 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 72/220 (32%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H  +G   E       L    I +      A A   DK+ SK+  +   V   P  L 
Sbjct: 77  AVHPGYGFLSEREAFARALADAGITFIGPNPGAIAAMGDKIESKKAAAKANVSTVPGYLG 136

Query: 113 ---VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSWNHGDQ 165
                   M     I  P +IK   GG   G+ +      +     L   ++ +    D+
Sbjct: 137 VISDTTHAMKIADEIGYPVMIKASAGGGGKGMRIAHSVTEVAEGFDLATAEAKASFGDDR 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+++ D   +   V+GD   +V  +   +        K             +     
Sbjct: 197 VFIEKFIVDPRHIEIQVLGDKHGNVIYLGERECSIQRRNQK----VIEEAPSPLLDETTR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +++   A    +A+        +F      +  F+LE+N 
Sbjct: 253 RKMGEQAVALAKAVNYDSAGTVEF-VAGQDKSFFFLEMNT 291


>gi|284031236|ref|YP_003381167.1| carbamoyl-phosphate synthase L chain ATP- binding protein
           [Kribbella flavida DSM 17836]
 gi|283810529|gb|ADB32368.1| Carbamoyl-phosphate synthase L chain ATP- binding protein
           [Kribbella flavida DSM 17836]
          Length = 1828

 Score = 76.3 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 47/235 (20%), Positives = 83/235 (35%), Gaps = 14/235 (5%)

Query: 39  DRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQ 98
              +   L     D A+ V  G   ED     + E + + +      A     DK+ SK 
Sbjct: 68  HAKLEQALTETGADAAW-VGWGFVAEDPAFAELCERIGVTFIGPSADAMRKLGDKIGSKL 126

Query: 99  VVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154
           +    GVPV P     +      + S   +  P ++K   GG   GI VI+    +    
Sbjct: 127 IAEEVGVPVAPWSRGAVESLDAALASAAEVGYPLMLKATAGGGGRGIRVIRDADELREAY 186

Query: 155 ----LQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209
                +++       + +E+ V G   +   V+ D       + V          K    
Sbjct: 187 QRTSDEAARAFGSGVVFLERLVTGARHVEVQVIADGQGTAWALGVRDCSVQRRNQKVIEE 246

Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +++ V    +  D   E++  A     A+G RG    +FL+    +   +LE+N 
Sbjct: 247 SASPV----LAPDQVAELKASAERLAVAVGYRGAGTVEFLYHLGDKLFAFLEVNT 297


>gi|196043382|ref|ZP_03110620.1| putative acetyl-CoA carboxylase, biotin carboxylase [Bacillus
           cereus 03BB108]
 gi|196025691|gb|EDX64360.1| putative acetyl-CoA carboxylase, biotin carboxylase [Bacillus
           cereus 03BB108]
          Length = 445

 Score = 76.3 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 80/220 (36%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       +   I +             K+ S+  + +  VPV P I  
Sbjct: 77  AIHPGYGLLSENPSFPVRCKEEGIVFIGPSEEIITKMGSKIESRIAMQAADVPVVPGITT 136

Query: 114 N----RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
           N       ++    I  P ++K   GG  +G+ +++ +Q++         ++ ++    +
Sbjct: 137 NIETAEEAIEIAKQIGYPLMLKASAGGGGIGMQLMETEQTLTKAFESNKTRAQNFFGNGE 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+Y+ D   +   ++ D   +   +   +        K             +     
Sbjct: 197 MYLERYIADAHHIEIQLLADTHGNTVYLWERECSVQRRNQK----VIEEAPSPFLDEGTR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K +  +A  A +A+G       +FL D      ++LE+N 
Sbjct: 253 KAMGEVAVQAAKALGYTNAGTVEFLVDDQKN-FYFLEMNT 291


>gi|90417426|ref|ZP_01225350.1| propionyl-CoA carboxylase, alpha subunit [marine gamma
           proteobacterium HTCC2207]
 gi|90330760|gb|EAS46035.1| propionyl-CoA carboxylase, alpha subunit [marine gamma
           proteobacterium HTCC2207]
          Length = 660

 Score = 76.3 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 73/220 (33%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H  +G   E+      L+   I +   G  A     DK+ SK +    GV   P    
Sbjct: 77  AVHPGYGFLSENSKFHDALDAAGIVFIGPGKKAIESMGDKITSKLIAQEAGVNCIPGYTD 136

Query: 113 ---VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS----IPLDLLQSSSWNHGDQ 165
                   ++    I  P ++K   GG   G+ V   +            ++ S     +
Sbjct: 137 VVRDAEHAVEISAGIGYPVMLKASAGGGGKGMRVAMNEAECRDGFERATNEARSSFGDTR 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+Y+ +   +   VM D   +V  +   +        K             +     
Sbjct: 197 IFIEKYIQEPRHIEIQVMADGHGNVIYLGERECSIQRRHQK----VIEEAPSPFLDEATR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +++   +    +A+  +     +F+ D      ++LE+N 
Sbjct: 253 QKMGEQSCALARAVDYQSAGTVEFIADA-DMNFYFLEMNT 291


>gi|317177835|dbj|BAJ55624.1| biotin carboxylase [Helicobacter pylori F16]
          Length = 455

 Score = 76.3 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 38/225 (16%), Positives = 77/225 (34%), Gaps = 14/225 (6%)

Query: 49  LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
            + D  F   +G   E+     I     + +        AL  DK ++K V+   G+PV 
Sbjct: 84  FEADAIFPG-YGFLSENQNFVEICSHHSLEFIGPSAKVMALMSDKSKAKSVMKEAGMPVI 142

Query: 109 PS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSW 160
                 +   +   +    I  P +IK   GG   G+ V+     +         ++ S 
Sbjct: 143 EGSDGLLKSYQEAEEIADKIGYPVIIKAAAGGGGRGMRVVGDKSKLKNLYLAAETEALSA 202

Query: 161 NHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI 219
                + +E+++     +   ++ D   +V  +          + K             +
Sbjct: 203 FGDGSVYLEKFINKPKHIEVQILADKHGNVIHVGERDCSVQRRQQKLI----EETPAVVL 258

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              + K +   A  A + IG  G    +FL D   +  +++E+N 
Sbjct: 259 EEGVRKRLLETAIKAAKYIGYVGAGTFEFLLDSNMKDFYFMEMNT 303


>gi|295702459|ref|YP_003595534.1| phosphoribosylaminoimidazole carboxylase, ATPase subunit [Bacillus
           megaterium DSM 319]
 gi|294800118|gb|ADF37184.1| phosphoribosylaminoimidazole carboxylase, ATPase subunit [Bacillus
           megaterium DSM 319]
          Length = 381

 Score = 76.3 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 30/192 (15%), Positives = 77/192 (40%), Gaps = 15/192 (7%)

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGG 136
           Y   G    A++ ++   K++++   + V    +V      + +   I  P V+K  +GG
Sbjct: 94  YVPQGSHLLAVTQNRRLEKEMITKLNLDVPDYAIVTTEEELLKAVETIGYPCVVKTCRGG 153

Query: 137 -SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAV 194
               G +++K + +I       +      + ++EQ+++   E++  V  +A  +   + V
Sbjct: 154 YDGKGQVLVKNENNIREAAELLAQ----SECIVEQWMNLDKEVSVIVHRNAKGETVCLPV 209

Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
            ++    + L         ++PA+I  D   +  + A    + +   G    +       
Sbjct: 210 AENIHKHHIL------HQTIVPARITADQEAKALQYAQEIAKGLDLVGTLAVEMFLTE-E 262

Query: 255 RKVFWLEINVQP 266
            +++  E+  +P
Sbjct: 263 GQLYINEMAPRP 274


>gi|218680540|ref|ZP_03528437.1| Carbamoyl-phosphate synthase L chain ATP-binding protein [Rhizobium
           etli CIAT 894]
          Length = 474

 Score = 76.3 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 41/220 (18%), Positives = 80/220 (36%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H  +G   E     A LE   I +      A     DK+ SK+  ++ GV   P  L 
Sbjct: 77  AVHPGYGFLSERAAFCAELEKQGIVFIGPKPRAIMAMGDKIESKKFANAAGVSTVPGHLG 136

Query: 113 VNRFTMDSQHL---ISPPYVIKPLKGGSSLGIIVIKKDQS----IPLDLLQSSSWNHGDQ 165
           V      ++ +   I  P +IK   GG   G+ +   +            ++ S    D+
Sbjct: 137 VIEDAAHAEVISGGIGYPVMIKASAGGGGKGMRIAWNEAEVRDGFERARSEAKSSFGDDR 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+++ +   +   V+ DA  +V  +   +        K     +       +     
Sbjct: 197 VFIEKFIVEPRHIEIQVLADAHGNVVYLGERECSIQRRNQK----VAEEAPSPFLDEKTR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K +   +    +A+  +     +F+ D   R  ++LE+N 
Sbjct: 253 KAMGEQSVALAKAVDYQSAGTVEFIVD-RDRNFYFLEMNT 291


>gi|317496859|ref|ZP_07955189.1| carbamoyl-phosphate synthase [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316895871|gb|EFV18023.1| carbamoyl-phosphate synthase [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 1066

 Score = 76.3 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 38/228 (16%), Positives = 85/228 (37%), Gaps = 13/228 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTMDSQHLISPPYV 129
           L  + +P   +       + D+    +++  C +P      V      ++  H +  P +
Sbjct: 648 LMKMGVPILGTSAENVDAAEDRELFDEILEECCIPRPKGTTVFTCEEALEVAHKLGYPVL 707

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           ++P       G+ +   D+ I   +   + +     +LI++Y+ G E+      DA  D 
Sbjct: 708 VRPSYVLGGQGMQIAVSDEDITAFMEVINRYEQEHPILIDKYLVGKEVEV----DAVCDG 763

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           T+I +P    +       S +S  V P   +   I + +        +++   G+    F
Sbjct: 764 TDILIPGIMEHVERAGIHSGDSISVYPSINLTDRIKRIIAEYTRKLAKSLHVIGLINIQF 823

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +      +V+ +E+N +   T     P ++   G     L   ++  A
Sbjct: 824 IV--ADDEVYVIEVNPRSSRT----VPYISKVTGIPIVALAAKVITGA 865



 Score = 62.8 bits (152), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 51/331 (15%), Positives = 118/331 (35%), Gaps = 47/331 (14%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQID-------VDRSVGL--------------V 45
           G ++E + +   G     AL++ G +V  ++        D+ +                +
Sbjct: 21  GQAAEFDYA---GTQACRALQEEGVEVVLVNSNPATIMTDKDIADKVYIEPLTASVIEKI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   KPD     L G    +  ++      LE   +    +       + D++  +Q + 
Sbjct: 78  IEKEKPDSILPTLGGQAALNLAMELVESGYLEKSGVKLIGTSPSTIKKAEDRLEFQQTME 137

Query: 102 SCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G P+    +V      ++   +I  P V++P       G  +    + +   L     
Sbjct: 138 KIGEPIAAGQVVKTVEDGVEFAKVIGYPAVLRPAYTLGGSGGGIAHNQEELETILENGLR 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   ++L+E+Y+ G  E+   VM D +     I   ++      +   + +S  V P++
Sbjct: 198 LSRVGEVLVERYIGGWKEVEYEVMRDENGTCITICNMEN---IDPVGVHTGDSIVVAPSQ 254

Query: 219 -IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
            +    Y+ ++  A      +   G     +  +P S +   +E+N  P ++  S     
Sbjct: 255 TLGDKEYQMLRTSALNIITELDVHGGCNVQYALNPDSFEYCVIEVN--PRVSRSS--ALA 310

Query: 278 AAYAGYSFRELLLWM--------VEDASCLR 300
           +   GY   ++   +        +E+A   +
Sbjct: 311 SKATGYPIAKVTAKIAIGYTLDEIENAVTKK 341


>gi|320166625|gb|EFW43524.1| 3-methylcrotonyl-CoA carboxylase biotin-containing subunit
           [Capsaspora owczarzaki ATCC 30864]
          Length = 711

 Score = 76.3 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 43/222 (19%), Positives = 85/222 (38%), Gaps = 23/222 (10%)

Query: 58  LHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI--- 111
           +H  +G   E+     +     + +      A      K  SK ++S   VPV       
Sbjct: 116 IHPGYGFLSENAAFADLCAKEGVVFIGPPASAIRDMGSKSASKIIMSDAKVPVIGGYHGS 175

Query: 112 --LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH-----GD 164
              V R   ++   I  P +IK + GG   G+ +++K +     +L+SS          D
Sbjct: 176 DQSVARLKAEADK-IGYPVLIKAIMGGGGKGMRIVEKPEDFE-AMLESSKRESLKSFGDD 233

Query: 165 QLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            +L+E+YV +   +   V  D   +   +           ++          PA  +  +
Sbjct: 234 NVLVEKYVLNPRHVEVQVFADKLGNGVYL-----FERDCSVQRRHQKIIEEAPAPGLSDE 288

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + + +   A  A QA+   G    +F+ DP  ++ +++E+N 
Sbjct: 289 VRRNLGETAVRAAQAVNYVGAGTVEFIMDPK-QQFYFMEMNT 329


>gi|167041139|gb|ABZ05899.1| putative carbamoyl-phosphate synthase L chain, ATP binding domain
           protein [uncultured marine microorganism HF4000_001A02]
          Length = 453

 Score = 76.3 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 33/220 (15%), Positives = 88/220 (40%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-IL 112
            +H  +G   E+     I +     +            +K ++K+ +   G+PV P    
Sbjct: 77  AIHPGYGFLAENAEFSIICKDNGFDFIGPSGDIINAMGNKAQAKKTMVDAGIPVIPGNEG 136

Query: 113 VNRFTMDSQHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGDQ 165
           + +   +++ L   +  P ++K   GG   G+ +++++  +         +S +  +   
Sbjct: 137 ILKDAEEARQLAIGMGFPVMLKASAGGGGRGMRLVREESEVIHAYNTASAESLAAFNNGD 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE++V+    +   ++ D+  +V  +   +        K           A +  ++ 
Sbjct: 197 MYIEKFVENPRHIEIQILADSYGNVVSLGERECSIQRRHQK----LIEESPSAAVDDELR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K +   A    +A+   G+   +FL D +++  +++E+N 
Sbjct: 253 KRMGEAAVAGAKAVNYVGVGTVEFLLD-INKDFYFMEMNT 291


>gi|167765823|ref|ZP_02437876.1| hypothetical protein CLOSS21_00314 [Clostridium sp. SS2/1]
 gi|167712540|gb|EDS23119.1| hypothetical protein CLOSS21_00314 [Clostridium sp. SS2/1]
 gi|291559181|emb|CBL37981.1| carbamoyl-phosphate synthase, large subunit [butyrate-producing
           bacterium SSC/2]
          Length = 1066

 Score = 76.3 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 38/228 (16%), Positives = 85/228 (37%), Gaps = 13/228 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTMDSQHLISPPYV 129
           L  + +P   +       + D+    +++  C +P      V      ++  H +  P +
Sbjct: 648 LMKMGVPILGTSAENVDAAEDRELFDEILEECCIPRPKGTTVFTCEEALEVAHKLGYPVL 707

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           ++P       G+ +   D+ I   +   + +     +LI++Y+ G E+      DA  D 
Sbjct: 708 VRPSYVLGGQGMQIAVSDEDITAFMEVINRYEQEHPILIDKYLVGKEVEV----DAVCDG 763

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           T+I +P    +       S +S  V P   +   I + +        +++   G+    F
Sbjct: 764 TDILIPGIMEHVERAGIHSGDSISVYPSINLTDRIKRIIAEYTRKLAKSLHVIGLINIQF 823

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +      +V+ +E+N +   T     P ++   G     L   ++  A
Sbjct: 824 IV--ADDEVYVIEVNPRSSRT----VPYISKVTGIPIVALAAKVITGA 865



 Score = 62.8 bits (152), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 51/331 (15%), Positives = 118/331 (35%), Gaps = 47/331 (14%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQID-------VDRSVGL--------------V 45
           G ++E + +   G     AL++ G +V  ++        D+ +                +
Sbjct: 21  GQAAEFDYA---GTQACRALQEEGVEVVLVNSNPATIMTDKDIADKVYIEPLTASVIEKI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   KPD     L G    +  ++      LE   +    +       + D++  +Q + 
Sbjct: 78  IEKEKPDSILPTLGGQAALNLAMELVESGYLEKSGVKLIGTSPSTIKKAEDRLEFQQTME 137

Query: 102 SCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G P+    +V      ++   +I  P V++P       G  +    + +   L     
Sbjct: 138 KIGEPIAAGQVVKTVEDGVEFAKVIGYPAVLRPAYTLGGSGGGIAHNQEELETILENGLR 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   ++L+E+Y+ G  E+   VM D +     I   ++      +   + +S  V P++
Sbjct: 198 LSRVGEVLVERYIGGWKEVEYEVMRDENGTCITICNMEN---IDPVGVHTGDSIVVAPSQ 254

Query: 219 -IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
            +    Y+ ++  A      +   G     +  +P S +   +E+N  P ++  S     
Sbjct: 255 TLGDKEYQMLRTSALNIITELDVHGGCNVQYALNPDSFEYCVIEVN--PRVSRSS--ALA 310

Query: 278 AAYAGYSFRELLLWM--------VEDASCLR 300
           +   GY   ++   +        +E+A   +
Sbjct: 311 SKATGYPIAKVTAKIAIGYTLDEIENAVTKK 341


>gi|145529862|ref|XP_001450714.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124418336|emb|CAK83317.1| unnamed protein product [Paramecium tetraurelia]
          Length = 645

 Score = 76.3 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 42/254 (16%), Positives = 86/254 (33%), Gaps = 38/254 (14%)

Query: 20  KACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPY 79
           +A  S L           +D ++      + P   F   +  F ED       +  ++ +
Sbjct: 57  QALQSYLRSDKI------IDVALSTKSQAIHPGFGFLSENAQFSED------CQKNDLIF 104

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT----MDSQHLISPPYVIKPLKG 135
                 A      K  SK +++   VPV P            +     I  P +IK + G
Sbjct: 105 VGPSADAIRKMGSKSESKIIMTDAKVPVVPGYHGETQDPNFLLQEAEKIGFPVLIKAVMG 164

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWN----HGDQLLIEQYVD-GIELTCGVMGDASLDVT 190
           G   G+ ++++       L  +          +++L+E+Y++    +   + G       
Sbjct: 165 GGGKGMRIVRQKSEFLEALEGAKREALKSFKDERVLVEKYIEKPRHIEVQIFG------- 217

Query: 191 EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
                       + K          P+ +   I  ++   A  A +A+        +F+F
Sbjct: 218 ----------IAQYKEDIKRVIEEAPSALDEKIRYDIGEKAKAAARAVKYSNAGTVEFIF 267

Query: 251 DPLSRKVFWLEINV 264
           D  S K +++E+N 
Sbjct: 268 DLDSSKFYFMEMNT 281


>gi|42781610|ref|NP_978857.1| acetyl-CoA carboxylase biotin carboxylase subunit [Bacillus cereus
           ATCC 10987]
 gi|42737533|gb|AAS41465.1| acetyl-CoA carboxylase, biotin carboxylase, putative [Bacillus
           cereus ATCC 10987]
          Length = 445

 Score = 76.3 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 80/220 (36%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       +   I +             K+ S+  + +  VPV P I  
Sbjct: 77  AIHPGYGLLSENPSFPVRCKEEGIVFIGPSEEIITKMGSKIESRIAMQAADVPVVPGITT 136

Query: 114 N----RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
           N       ++    I  P ++K   GG  +G+ +++ +Q++         ++ ++    +
Sbjct: 137 NIETAEEAIEIAKQIGYPLMLKASAGGGGIGMQLMETEQTLTKAFESNKTRAQNFFGNGE 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+Y+ D   +   ++ D   +   +   +        K             +     
Sbjct: 197 MYLERYIADAHHIEIQLLADTHGNTVYLWERECSVQRRNQK----VIEEAPSPFLDEGTR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K +  +A  A +A+G       +FL D      ++LE+N 
Sbjct: 253 KAMGEVAVQAAKALGYTNAGTVEFLVDDQKN-FYFLEMNT 291


>gi|309789560|ref|ZP_07684141.1| acetyl-CoA carboxylase, biotin carboxylase [Oscillochloris
           trichoides DG6]
 gi|308228296|gb|EFO81943.1| acetyl-CoA carboxylase, biotin carboxylase [Oscillochloris
           trichoides DG6]
          Length = 457

 Score = 76.3 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 38/219 (17%), Positives = 72/219 (32%), Gaps = 17/219 (7%)

Query: 58  LHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS---- 110
           +H  +G   E+     I    ++ +         L  DK   +Q + + GVP+ P     
Sbjct: 78  IHPGYGFLSENPYFAEICAECKLTFIGPSAETIRLMGDKSIGRQTMRAAGVPIIPGSEGE 137

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD-----LLQSSSWNHGDQ 165
           +      +D    I  P ++KP  GG   G+ V   +  +             ++  GD 
Sbjct: 138 LQSVEEAVDLARQIGYPVLLKPSAGGGGRGMRVANDESELIRAFSTARAEAEGAFGRGDL 197

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
           +L +       +   V+ DA      +            K             +  ++  
Sbjct: 198 ILEKYLPKVRHVEIQVLADAYGHAIHLGERDCSAQRRHQKIL----EEAPSPVVTPEVRA 253

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +   A    Q+IG       +FL DP     +++E+N 
Sbjct: 254 RMGADALRGIQSIGYLNAGTLEFLMDP-DGNYYFIEMNT 291


>gi|260886442|ref|ZP_05897705.1| carbamoyl-phosphate synthase, large subunit [Selenomonas sputigena
           ATCC 35185]
 gi|330838795|ref|YP_004413375.1| carbamoyl-phosphate synthase, large subunit [Selenomonas sputigena
           ATCC 35185]
 gi|260863824|gb|EEX78324.1| carbamoyl-phosphate synthase, large subunit [Selenomonas sputigena
           ATCC 35185]
 gi|329746559|gb|AEB99915.1| carbamoyl-phosphate synthase, large subunit [Selenomonas sputigena
           ATCC 35185]
          Length = 1076

 Score = 76.3 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 49/295 (16%), Positives = 108/295 (36%), Gaps = 37/295 (12%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ------ 69
           AL + G++   I         D D S  L    L  +   N++     E  +VQ      
Sbjct: 583 ALREMGYEAIIINNNPETVSTDFDISDRLYFEPLTTEDVLNIVDKEQPEGVIVQFGGQTA 642

Query: 70  ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHL 123
               A L+   +    + +     + D+ R ++V+    +P    I V      ++    
Sbjct: 643 INLAASLQKAGVHIFGTSVDDIDRAEDRERFEEVLRQTNIPCPKGISVTDVESAVEGAAA 702

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + ++ K++ +   L ++        +L+++Y+ G E+      
Sbjct: 703 IGYPVMVRPSYVLGGRAMEIVYKEEELRDYLNRAVKVTPDHPVLVDRYMQGTEVEV---- 758

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRG 242
           D   D   + +P    +       S +S  V P + +P  +   +          +  +G
Sbjct: 759 DGICDGVTVVIPGIMEHIERAGVHSGDSIAVYPPQTLPARVLYTIIDYTKRLALNLHVKG 818

Query: 243 ISRSDFLFDPLSRKVFWLEIN-----VQPGM---TPVSIFPEMAAYA-GYSFREL 288
           +    ++   ++ +V+ +E+N       P +   T V +       A G+S  E+
Sbjct: 819 LLNIQYVV--VNDEVYVIEVNPRSSRTVPFLSKVTDVKMVNLATRAAMGHSLEEM 871



 Score = 65.9 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 30/200 (15%), Positives = 77/200 (38%), Gaps = 9/200 (4%)

Query: 70  AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPP 127
            +LE   +    + + A   + D+   K+ +     P+  S +V      +   + I  P
Sbjct: 106 GVLEKYHVELLGTSLEAIKKAEDRELFKETMQKLKEPIPESTIVEDVESAVGFANEIGYP 165

Query: 128 YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG---IELTCGVMGD 184
            +++P       G  + + ++ +   +++   ++   Q+LIE+ V G   IE      G+
Sbjct: 166 LIVRPAYTMGGTGGGIAENEEELVETVIKGLKYSMIGQVLIERSVAGWKEIEYEVMRDGN 225

Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244
            +     I V   + +     ++  +        +    Y+ ++  +    + +   G  
Sbjct: 226 DN----CITVCNMENFDPVGVHTGDSIVVAPTQTLSDHDYQMLRSASLRIIRELNIEGGC 281

Query: 245 RSDFLFDPLSRKVFWLEINV 264
            + +  DP S + + +E+N 
Sbjct: 282 NAQYALDPNSDRYYVIEVNP 301


>gi|228901096|ref|ZP_04065302.1| Biotin carboxylase [Bacillus thuringiensis IBL 4222]
 gi|228965478|ref|ZP_04126564.1| Biotin carboxylase [Bacillus thuringiensis serovar sotto str.
           T04001]
 gi|228794208|gb|EEM41726.1| Biotin carboxylase [Bacillus thuringiensis serovar sotto str.
           T04001]
 gi|228858547|gb|EEN03001.1| Biotin carboxylase [Bacillus thuringiensis IBL 4222]
          Length = 445

 Score = 76.3 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 80/220 (36%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       +   I +             K+ S+  + +  VPV P I  
Sbjct: 77  AIHPGYGLLSENPSFPVRCKEEGIVFIGPSEEIITKMGSKIESRIAMQAADVPVVPGITT 136

Query: 114 N----RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
           N       ++    I  P ++K   GG  +G+ +++ +Q++         ++ ++    +
Sbjct: 137 NIETAEEAIEIAKQIGYPLMLKASAGGGGIGMQLMETEQTLTKAFESNKTRAQNFFGNGE 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+Y+ D   +   ++ D   +   +   +        K             +     
Sbjct: 197 MYLERYIADAHHIEIQLLADTHGNTVYLWERECSVQRRNQK----VIEEAPSPFLDEGTR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K +  +A  A +A+G       +FL D      ++LE+N 
Sbjct: 253 KAMGEVAVQAAKALGYTNAGTVEFLVDDQKN-FYFLEMNT 291


>gi|218897498|ref|YP_002445909.1| putative acetyl-CoA carboxylase, biotin carboxylase [Bacillus
           cereus G9842]
 gi|218543331|gb|ACK95725.1| putative acetyl-CoA carboxylase, biotin carboxylase [Bacillus
           cereus G9842]
          Length = 445

 Score = 76.3 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 80/220 (36%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       +   I +             K+ S+  + +  VPV P I  
Sbjct: 77  AIHPGYGLLSENPSFPVRCKEEGIVFIGPSEEIITKMGSKIESRIAMQAADVPVVPGITT 136

Query: 114 N----RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
           N       ++    I  P ++K   GG  +G+ +++ +Q++         ++ ++    +
Sbjct: 137 NIETAEEAIEIAKQIGYPLMLKASAGGGGIGMQLMETEQTLTKAFESNKTRAQNFFGNGE 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+Y+ D   +   ++ D   +   +   +        K             +     
Sbjct: 197 MYLERYIADAHHIEIQLLADTHGNTVYLWERECSVQRRNQK----VIEEAPSPFLDEGTR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K +  +A  A +A+G       +FL D      ++LE+N 
Sbjct: 253 KAMGEVAVQAAKALGYTNAGTVEFLVDDQKN-FYFLEMNT 291


>gi|149914573|ref|ZP_01903103.1| methylcrotonyl-CoA carboxylase, alpha subunit [Roseobacter sp.
           AzwK-3b]
 gi|149811366|gb|EDM71201.1| methylcrotonyl-CoA carboxylase, alpha subunit [Roseobacter sp.
           AzwK-3b]
          Length = 655

 Score = 76.3 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 79/225 (35%), Gaps = 23/225 (10%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      +E   + +      A      K  +K ++   GVPV P    
Sbjct: 77  AIHPGYGFLSENPDFVDAVEAAGLVFIGPSAAAIRAMGLKDAAKALMEEAGVPVVPGYHG 136

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
                +    +   I  P +IK + GG   G+ ++++       L  + S        D 
Sbjct: 137 AHQDPEHLAGAADAIGYPVLIKAVAGGGGKGMRLVERPGDFADALRSARSEARTAFGNDA 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           +LIE++V     +   V GD                   L+          PA  +  ++
Sbjct: 197 VLIEKFVAKPRHIEVQVFGDG------RRAVHLFERDCSLQRRHQKVIEEAPAPGMTEEM 250

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPL----SRKVFWLEINV 264
              + + A  A +AIG  G    +F+ D      +   +++E+N 
Sbjct: 251 RAAMGQAAVRAAEAIGYAGAGTVEFIVDGSRGLRTDGFWFMEMNT 295


>gi|325978522|ref|YP_004288238.1| carbamoyl phosphate synthase large subunit [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
 gi|325178450|emb|CBZ48494.1| carbamoyl phosphate synthase large subunit [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
          Length = 1059

 Score = 76.3 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 26/228 (11%), Positives = 76/228 (33%), Gaps = 19/228 (8%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYV 129
           L    +    + +     + D+   +Q +    +P  P           ++   I  P +
Sbjct: 646 LSKAGVTILGTQVADLDRAEDRDLFEQALKELDIPQPPGQTATNEEEAVEAARKIGFPVL 705

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS--- 186
           ++P        + +++ ++ +   +  +   +    +L++ Y+ G E     + D     
Sbjct: 706 VRPSYVLGGRAMEIVENEEDLRSYMRTAVKASPDHPVLVDSYIVGRECEVDAISDGKDVL 765

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISR 245
           +      + ++  +S        +S  V P + +   I   +          + C G+  
Sbjct: 766 IPGIMEHIERAGVHS-------GDSMAVYPPQTLSKKIQDTIADYTKRLAIGLNCFGMMN 818

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
             F+       V+ +E+N +   T     P ++        ++   ++
Sbjct: 819 IQFVI--KDETVYVIEVNPRASRT----VPFLSKVTNIPMAQVATKLI 860



 Score = 72.1 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 49/296 (16%), Positives = 106/296 (35%), Gaps = 34/296 (11%)

Query: 25  ALEDAGFKVSQID-------VDRSVGLV--------------LAHLKPDLAFNVLHGNFG 63
           AL++ G+ V  ++        D+ +                 +   +PD     L G  G
Sbjct: 36  ALKEEGYSVVLVNSNPATIMTDKEIADQVYIEPLTLEFVTRIIRKERPDALLPTLGGQTG 95

Query: 64  EDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFT 117
            +  ++     IL+ L +    + + A   + D+   KQ++     P+  S +VN     
Sbjct: 96  LNMAMELSRAGILDELGVELLGTKLSAIDQAEDRDLFKQLMEDLNQPIPESEIVNTVDEA 155

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IE 176
           +     I  P +++P       G  +   ++ +          +   Q LIE+ + G  E
Sbjct: 156 VAFAESIGYPVIVRPAFTLGGTGGGMCDNEEELREIAENGLKLSPVTQCLIERSIAGFKE 215

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +   VM DA+ +   + V   + +     ++  +        +     + ++  +    +
Sbjct: 216 IEYEVMRDAADNA--LVVCNMENFDPVGIHTGDSIVFAPTQTLSDIENQMLRDASLSIIR 273

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           A+   G        DP S K + +E+N  P ++  S     +   GY   +L   +
Sbjct: 274 ALKIEGGCNVQLALDPNSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAKI 325


>gi|306831618|ref|ZP_07464776.1| carbamoyl-phosphate synthase, large subunit [Streptococcus
           gallolyticus subsp. gallolyticus TX20005]
 gi|304426403|gb|EFM29517.1| carbamoyl-phosphate synthase, large subunit [Streptococcus
           gallolyticus subsp. gallolyticus TX20005]
          Length = 1059

 Score = 76.3 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 26/228 (11%), Positives = 76/228 (33%), Gaps = 19/228 (8%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYV 129
           L    +    + +     + D+   +Q +    +P  P           ++   I  P +
Sbjct: 646 LSKAGVTILGTQVADLDRAEDRDLFEQALKELDIPQPPGQTATNEEEAVEAARKIGFPVL 705

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS--- 186
           ++P        + +++ ++ +   +  +   +    +L++ Y+ G E     + D     
Sbjct: 706 VRPSYVLGGRAMEIVENEEDLRSYMRTAVKASPDHPVLVDSYIVGRECEVDAISDGKDVL 765

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISR 245
           +      + ++  +S        +S  V P + +   I   +          + C G+  
Sbjct: 766 IPGIMEHIERAGVHS-------GDSMAVYPPQTLSKKIQDTIADYTKRLAIGLNCFGMMN 818

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
             F+       V+ +E+N +   T     P ++        ++   ++
Sbjct: 819 IQFVI--KDETVYVIEVNPRASRT----VPFLSKVTNIPMAQVATKLI 860



 Score = 72.1 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 49/296 (16%), Positives = 106/296 (35%), Gaps = 34/296 (11%)

Query: 25  ALEDAGFKVSQID-------VDRSVGLV--------------LAHLKPDLAFNVLHGNFG 63
           AL++ G+ V  ++        D+ +                 +   +PD     L G  G
Sbjct: 36  ALKEEGYSVVLVNSNPATIMTDKEIADQVYIEPLTLEFVTRIIRKERPDALLPTLGGQTG 95

Query: 64  EDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFT 117
            +  ++     IL+ L +    + + A   + D+   KQ++     P+  S +VN     
Sbjct: 96  LNMAMELSRAGILDELGVELLGTKLSAIDQAEDRDLFKQLMEDLNQPIPESEIVNTVDEA 155

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IE 176
           +     I  P +++P       G  +   ++ +          +   Q LIE+ + G  E
Sbjct: 156 VAFAESIGYPVIVRPAFTLGGTGGGMCDNEEELREIAENGLKLSPVTQCLIERSIAGFKE 215

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +   VM DA+ +   + V   + +     ++  +        +     + ++  +    +
Sbjct: 216 IEYEVMRDAADNA--LVVCNMENFDPVGIHTGDSIVFAPTQTLSDIENQMLRDASLSIIR 273

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           A+   G        DP S K + +E+N  P ++  S     +   GY   +L   +
Sbjct: 274 ALKIEGGCNVQLALDPNSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAKI 325


>gi|298364398|gb|ADI79335.1| chloroplast biotin carboxylase [Brassica napus]
          Length = 536

 Score = 76.3 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 80/220 (36%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
           +LH  +G   E+ L   +     I +      +  +  DK  +++ + + GVP  P    
Sbjct: 148 MLHPGYGFLAENALFVEMCREHRINFIGPNPDSIRVMGDKSTARETMKNAGVPTVPGSDG 207

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS----IPLDLLQSSSWNHGDQ 165
            +      +   + I  P +IK   GG   G+ +  +       +     ++++    D 
Sbjct: 208 LLQSTEEGVRLANEIGYPVMIKATAGGGGRGMRLANEPSEFVKLLQQAKSEAAAAFGNDG 267

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+YV +   +   ++ D   +V               K             +  ++ 
Sbjct: 268 VYLEKYVQNPRHIEFQILADKFGNVVHFGERDCSIQRRNQKLL----EEAPSPALTPELR 323

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K +   A  A  +IG  G+   +FL D      +++E+N 
Sbjct: 324 KAMGDAAVAAAASIGYIGVGTVEFLLDER-GSFYFMEMNT 362


>gi|299756496|ref|XP_002912209.1| biotin/lipoyl attachment:Carbamoyl-phosphate synthase subunit L
           [Coprinopsis cinerea okayama7#130]
 gi|298411703|gb|EFI28715.1| biotin/lipoyl attachment:Carbamoyl-phosphate synthase subunit L
           [Coprinopsis cinerea okayama7#130]
          Length = 1097

 Score = 76.3 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 84/223 (37%), Gaps = 20/223 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      L    I +      A      K  SK ++SS GVP  P    
Sbjct: 447 AVHPGYGFLSENAKFAEQLAAEGIVFIGPPASAIISMGSKSESKNIMSSAGVPCVPGYHG 506

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVI--KKDQSIPLDLLQSSSWNH----G 163
           ++   D        I  P +IK + GG   G+  +     ++    LL +   +      
Sbjct: 507 DKQDPDFLFQEAQKIGFPVLIKAIHGGGGKGMRTVLEPTREAFEEGLLSAKRESLKSFGN 566

Query: 164 DQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPL 221
           D +L+E+Y+     +   V  D   +V  +           ++  +       PA  +  
Sbjct: 567 DTVLVEKYIQRPRHVEVQVFADTLGNVVSLWE-----RDCSVQRRNQKIIEEAPAPGLSP 621

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           ++  ++   A  A +A+   G    +F+FD  ++  +++E+N 
Sbjct: 622 ELRADLSAKAIAAARAVNYVGAGTVEFIFDNDTQDFYFMEMNT 664


>gi|195953494|ref|YP_002121784.1| Carbamoyl-phosphate synthase L chain ATP-binding [Hydrogenobaculum
           sp. Y04AAS1]
 gi|195933106|gb|ACG57806.1| Carbamoyl-phosphate synthase L chain ATP-binding [Hydrogenobaculum
           sp. Y04AAS1]
          Length = 554

 Score = 76.3 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 56/289 (19%), Positives = 105/289 (36%), Gaps = 38/289 (13%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQIDVD---------------------RSVGLV 45
           G ++E + S   G     AL   G++V  ++ +                       +  +
Sbjct: 21  GQAAEFDYS---GTQACKALMREGYEVVLVNSNPATIMTDEQLATKTYIEPLSVEVLEEI 77

Query: 46  LAHLKPDLAFNVLHG----NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   +PD+    L G    N  +D     ILE   +    +   A     D+    + + 
Sbjct: 78  IKKERPDVLLPTLGGQTALNLAKDLYESGILERYGVGIIGANYEAIKKGEDRALFAKAME 137

Query: 102 SCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G+ V P+ +VN  +  M S   I  P +++P       G  ++   +  P  L  +  
Sbjct: 138 EIGLKVPPNAIVNSISEGMASIKDIGFPAILRPAFTLGGTGGSIVYNLEEFPAKLNAALE 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGD-ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
            +   Q+LI++ + G  E    V+ D     V   ++   D           +S  V PA
Sbjct: 198 ASPIHQVLIDKSLIGWKEFELEVIRDTKDNVVIVCSIENFDPMGVHT----GDSITVAPA 253

Query: 218 K-IPLDIYKEVQRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
           + +    Y+ ++  +    + IG   G S   F  DP S   + +E+N 
Sbjct: 254 QTLTDKQYQMLRDASLAIIRKIGVDTGGSNIQFAVDPNSDNFYVIEMNP 302


>gi|159045026|ref|YP_001533820.1| pyruvate carboxylase [Dinoroseobacter shibae DFL 12]
 gi|157912786|gb|ABV94219.1| pyruvate carboxylase [Dinoroseobacter shibae DFL 12]
          Length = 1145

 Score = 76.3 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 34/221 (15%), Positives = 75/221 (33%), Gaps = 18/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+           I +            DK  +++V    GVPV P+  V
Sbjct: 80  AIHPGYGLLSENPDFVDACVANGIAFIGPRAETMRALGDKASARRVAIEAGVPVIPATEV 139

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ----SSSWNHGDQ 165
               MD        I  P ++K   GG   G+  I     +   + +    + +     +
Sbjct: 140 LGDDMDKVRAEAEAIGFPLMLKASWGGGGRGMRPIFDPDEVADKVREGRREAEAAFGNGE 199

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
             +E+ +     +   ++GD+  ++  +           ++  +       PA  +    
Sbjct: 200 GYLEKMITRARHVEVQILGDSMGNIYHLWE-----RDCSVQRRNQKVVERAPAPYLSSSQ 254

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +++  L       +        +FL D  + + F++E+N 
Sbjct: 255 REQLCELGRKICAHVNYECAGTVEFLMDMDTGEFFFIEVNP 295


>gi|326405203|ref|YP_004285285.1| urea carboxylase [Acidiphilium multivorum AIU301]
 gi|325052065|dbj|BAJ82403.1| urea carboxylase [Acidiphilium multivorum AIU301]
          Length = 1162

 Score = 76.3 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 38/256 (14%), Positives = 80/256 (31%), Gaps = 30/256 (11%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E       L    I +             K  ++ +    GVP+ P   +
Sbjct: 82  AVHPGYGFLAERADFAEALADAGIVFIGPRPEQMRAFGLKHTARALARDAGVPLLPGSGL 141

Query: 114 NRFTMDSQHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQL 166
                 +      I  P ++K   GG  +G+     +  +          + +      L
Sbjct: 142 LGSVEAAAEAAAGIGYPVMLKSTAGGGGIGMAPCADEAELRARFAGISRLAQANFGEAAL 201

Query: 167 LIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
            +E++V     +   + GD +  V  +            K          P  IP  +  
Sbjct: 202 YLEKFVTAARHVEVQIFGDGAGGVIALGARDCSLQRRNQK----VVEETPPPGIPAPVLA 257

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285
            ++  A    +++        +F++D  +   ++LE+N             +    G + 
Sbjct: 258 AMEDAACGLARSVRYLSAGTVEFIYDAATEGFYFLEVNT-----------RLQVEHGVTE 306

Query: 286 R----ELLLWMVEDAS 297
                +L+ WMV  A+
Sbjct: 307 EVFGIDLVEWMVRAAA 322


>gi|198443113|pdb|2VQD|A Chain A, Crystal Structure Of Biotin Carboxylase From Pseudomonas
           Aeruginosa Complexed With Ampcp
 gi|199583512|pdb|2C00|A Chain A, Crystal Structure Of Biotin Carboxylase From Pseudomonas
           Aeruginosa In Apo Form
 gi|199583513|pdb|2C00|B Chain B, Crystal Structure Of Biotin Carboxylase From Pseudomonas
           Aeruginosa In Apo Form
          Length = 464

 Score = 76.3 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 74/222 (33%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         L  DK+ +K  +   GVP  P    
Sbjct: 77  AIHPGYGFLAENADFAEQIERSGFTFVGPTAEVIRLMGDKVSAKDAMKRAGVPTVPGSDG 136

Query: 112 LVNRFTMDS---QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGD 164
            +      +      +  P +IK   GG   G+ V+  +  +         ++ +     
Sbjct: 137 PLPEDEETALAIAREVGYPVIIKAAGGGGGRGMRVVYDESELIKSAKLTRTEAGAAFGNP 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+++     +   V+ D   +               L+          PA  I   
Sbjct: 197 MVYLEKFLTNPRHVEVQVLSDGQGNAI-----HLGDRDCSLQRRHQKVIEEAPAPGIDEK 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +EV      A   IG RG    +FL+   + + +++E+N 
Sbjct: 252 ARQEVFARCVQACIEIGYRGAGTFEFLY--ENGRFYFIEMNT 291


>gi|170749112|ref|YP_001755372.1| acetyl-CoA carboxylase, biotin carboxylase [Methylobacterium
           radiotolerans JCM 2831]
 gi|170655634|gb|ACB24689.1| acetyl-CoA carboxylase, biotin carboxylase [Methylobacterium
           radiotolerans JCM 2831]
          Length = 450

 Score = 76.3 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 81/221 (36%), Gaps = 20/221 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+     +L   +I +            DK+ +K+     G+P  P    
Sbjct: 77  AVHPGYGFLSENARFAEVLAHHQIGFIGPKAQHIRTMGDKIEAKRTALKLGIPCVPGSEG 136

Query: 114 NRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGDQ 165
                D+       I  P ++K   GG   G+ V + +  +   +     ++ +    D 
Sbjct: 137 GVEDADTAKRVAAEIGYPVLVKAAAGGGGRGMKVARSEAELEQAIGMAKSEAKAAFGDDA 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELK-YSSLNSTHVLPAKIPLDI 223
           + +E+Y++    +   V+GD       +A           K +    S    PA +   +
Sbjct: 197 VYLEKYLEKPRHIEVQVLGDGRGGAVHLAERDCSLQRRHQKVWEEGGS----PA-LNESM 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             E+  +   A + +G  G    +FL+     + +++E+N 
Sbjct: 252 RAEIGGICANAMKELGYLGAGTIEFLY--EDGRFYFIEMNT 290


>gi|308069606|ref|YP_003871211.1| biotin carboxylase [Paenibacillus polymyxa E681]
 gi|305858885|gb|ADM70673.1| Biotin carboxylase (A subunit of acetyl-CoA carboxylase) (ACC)
           [Paenibacillus polymyxa E681]
          Length = 447

 Score = 76.3 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 41/221 (18%), Positives = 81/221 (36%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     I E   I +      A     DK  +KQ +   GVPV P    
Sbjct: 78  AIHPGYGFLAENADFAEICESCNITFIGPSPEAINKMGDKAVAKQTMKDAGVPVIPGSDG 137

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS-----SSWNHGD 164
            +   +  +     I  P +IK   GG   GI + + + ++   +  +      ++ +  
Sbjct: 138 LVEDLQDAISIARDIGYPIIIKATAGGGGKGIRIAEDEDNLIQQITTAQQEAQKAFGNAG 197

Query: 165 QLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            + +E+Y+ G   +   ++ D   +V  +            K             +  D+
Sbjct: 198 -VYLEKYLTGMKHVEIQIIADKHGNVAHLGERDCSVQRRRQKLL----EEAPCPVLSQDV 252

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +E+ + A  A  A+   G    +FL  P     +++E+N 
Sbjct: 253 REEMGQAAVRAALAVQYSGAGTLEFLLGP-DNNFYFMEMNT 292


>gi|125624569|ref|YP_001033052.1| acetyl-CoA carboxylase biotin carboxylase subunit [Lactococcus
           lactis subsp. cremoris MG1363]
 gi|124493377|emb|CAL98351.1| acetyl-CoA carboxylase biotin carboxylase subunit [Lactococcus
           lactis subsp. cremoris MG1363]
 gi|300071362|gb|ADJ60762.1| acetyl-CoA carboxylase biotin carboxylase subunit [Lactococcus
           lactis subsp. cremoris NZ9000]
          Length = 455

 Score = 76.3 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 73/220 (33%), Gaps = 16/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  FG   E+     + E + I +         +  DK+ ++  +    VPV P    
Sbjct: 77  AIHPGFGFLSENSKFARLCEEMNIKFIGPSAKVMDMMGDKINARAEMIKADVPVTPGSEG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
            +      +     I  P ++K   GG   GI  +   + +      + +          
Sbjct: 137 EVHTTDEAVKIAEEIGYPIMLKASAGGGGKGIRKVNNVEELVPAFEAAQAEAQAAFGNGA 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+ +     +   ++GD+  +V  +            K             I   + 
Sbjct: 197 MFIERMIFPARHIEVQILGDSQGNVIHLGERDCSLQRNNQKVL----EESPSVAIGHTLR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            E+   A  A Q +        +FL D  S K +++E+N 
Sbjct: 253 NEITAAAVKAAQHVSYENAGTIEFLLDESSGKFYFMEMNT 292


>gi|328869226|gb|EGG17604.1| methylcrotonyl-CoA carboxylase [Dictyostelium fasciculatum]
          Length = 692

 Score = 76.3 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 81/221 (36%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+     + E   + +      A      K  SK ++ +  VP  P    
Sbjct: 106 AIHPGYGFLSENAEFADLCERNNLVFIGPPSSAIRAMGSKSASKDIMIAANVPTIPGYHG 165

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
                +        I  P +IK + GG   G+ ++++++ +   +     +S +     +
Sbjct: 166 EDQAFETLKSEAAKIGYPVLIKAVLGGGGKGMRIVEREEDLADGIDSSKRESQASFGDSR 225

Query: 166 LLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           +L+E+Y V    +   V  DA  +               ++          PA  +  ++
Sbjct: 226 VLVEKYLVHPRHVEIQVFADAHGNCV-----HLFERDCSVQRRHQKIIEEAPAPHLSEEL 280

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +++   A  A +A+G  G    +F+        F++E+N 
Sbjct: 281 RQKMGSAAVAAAKAVGYVGAGTVEFILS-QDGSFFFMEMNT 320


>gi|319892659|ref|YP_004149534.1| Biotin carboxylase [Staphylococcus pseudintermedius HKU10-03]
 gi|317162355|gb|ADV05898.1| Biotin carboxylase [Staphylococcus pseudintermedius HKU10-03]
 gi|323464303|gb|ADX76456.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Staphylococcus
           pseudintermedius ED99]
          Length = 456

 Score = 76.3 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 41/244 (16%), Positives = 92/244 (37%), Gaps = 19/244 (7%)

Query: 32  KVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASA 88
           + + +D   ++  +LA  +   A N +H  +G   E  +    +E   + +         
Sbjct: 52  QANPLDSYLNIRKILAAAEITKA-NAIHPGYGFLSESPVFAEKVENEGLYFIGPTKKTMQ 110

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSLGIIVI 144
              DK+ ++Q V   GVP+ P    +  ++D        I  P VIK   GG   GI ++
Sbjct: 111 RMGDKITARQTVDKAGVPIIPGSKSSVESVDEIKALAEEIGYPLVIKAASGGGGKGIRIV 170

Query: 145 KKDQSIPLDLLQSSS----WNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDF 199
           K++  +     ++ S    + + D++ +E ++     +   V+GD       +       
Sbjct: 171 KEESQLERAFKEAKSEGNKYFNDDRVYVEAFIPVAKHVEVQVLGDGQSRYIHLGERDCSV 230

Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
                + +         + +  +  +++   A    +A   R     +FL        ++
Sbjct: 231 ----QRKNQKLIEESPCSALTEEKREKICNDAVKVAKAAQYRSAGTIEFLVTE--DAYYF 284

Query: 260 LEIN 263
           +E+N
Sbjct: 285 IEMN 288


>gi|228908266|ref|ZP_04072111.1| Biotin carboxylase [Bacillus thuringiensis IBL 200]
 gi|228851307|gb|EEM96116.1| Biotin carboxylase [Bacillus thuringiensis IBL 200]
          Length = 445

 Score = 76.3 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 80/220 (36%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       +   I +             K+ S+  + +  VPV P I  
Sbjct: 77  AIHPGYGLLSENPSFPVRCKEEGIVFIGPSEEIITKMGSKIESRIAMQAADVPVVPGITT 136

Query: 114 N----RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
           N       ++    I  P ++K   GG  +G+ +++ +Q++         ++ ++    +
Sbjct: 137 NIETAEEAIEIAKQIGYPLMLKASAGGGGIGMQLMETEQTLTKAFESNKTRAQNFFGNGE 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+Y+ D   +   ++ D   +   +   +        K             +     
Sbjct: 197 MYLERYIADAHHIEIQLLADTHGNTVYLWERECSVQRRNQK----VIEEAPSPFLDEGTR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K +  +A  A +A+G       +FL D      ++LE+N 
Sbjct: 253 KAMGEVAVQAAKALGYTNAGTVEFLVDDQKN-FYFLEMNT 291


>gi|218889234|ref|YP_002438098.1| acetyl-CoA carboxylase biotin carboxylase subunit [Pseudomonas
           aeruginosa LESB58]
 gi|218769457|emb|CAW25217.1| probable acyl-CoA carboxylase subunit [Pseudomonas aeruginosa
           LESB58]
          Length = 458

 Score = 76.3 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 37/223 (16%), Positives = 82/223 (36%), Gaps = 25/223 (11%)

Query: 58  LHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
           +H  +G   E+      ++   + +            DK  +++   + GVPV P     
Sbjct: 81  IHPGYGFLSENPAFAEAVQAAGLVFVGPDAQTIRRMGDKAEARRTAMAAGVPVVPGSPGE 140

Query: 115 RFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGDQL 166
              +D+       +  P ++K   GG   GI +      +    P+   ++ +      +
Sbjct: 141 LGDLDAALACAEEVGYPLLVKASAGGGGRGIRIAHDADELRREFPIAQREAQAAFGSPAV 200

Query: 167 LIEQYVD-GIELTCGVMGDASLDVT----EIAVPKSDFYSYELKYSSLNSTHVLPAKIPL 221
            +E+++     +   ++GD    V     E ++ +     +E             A +  
Sbjct: 201 YLERFIRQARHIEVQILGDGERAVHLFERECSLQRRRQKVFE---------EAPSAALDG 251

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              + +   A    Q++G RG    ++LFD  S + F++E+N 
Sbjct: 252 AQRQALCESAVRLAQSLGYRGAGTLEYLFDAHSGEFFFIEMNT 294


>gi|218781319|ref|YP_002432637.1| carbamoyl-phosphate synthase, large subunit [Desulfatibacillum
           alkenivorans AK-01]
 gi|218762703|gb|ACL05169.1| Carbamoyl phosphate synthetase, large subunit [Desulfatibacillum
           alkenivorans AK-01]
          Length = 1075

 Score = 76.3 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 51/278 (18%), Positives = 104/278 (37%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G++V  +         D +             +V  ++A  +PD    
Sbjct: 29  SGTQACKALKEEGYEVVLVNSNPATIMTDPETADRTYVEPVTPDAVEKIIAKERPDALLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G  G +  +    + +LE   +    + +     + D+   +  + + G+ V  S +
Sbjct: 89  TLGGQTGLNTAIEVAKRGVLEKYGVEMIGARVEVIEKAEDRELFRTAMENIGLSVPQSEI 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           V+       +   I  P +I+P       G  +    + + + +      +   Q+++EQ
Sbjct: 149 VHTLEEARKAAKDIGFPIIIRPSYTLGGTGGGIAYNVEDLDVFVKSGLDASLIHQVMLEQ 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            V G  E    VM D + +V  I   ++ D           +S  V PA+ +    Y+ +
Sbjct: 209 SVLGWKEFELEVMRDKADNVVIICSIENMDPMGVHT----GDSITVAPAQTLTDKQYQIM 264

Query: 228 QRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
           +       + IG   G S   F  +P +  +  +E+N 
Sbjct: 265 RDATLAVMREIGVDTGGSNVQFAVNPENGDMIVIEMNP 302



 Score = 56.7 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 28/193 (14%), Positives = 71/193 (36%), Gaps = 8/193 (4%)

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--FTMDSQHLISPPYVIKP 132
             +P   +   +   + D+   K ++   G+    +        T+     I  P +++P
Sbjct: 658 AGVPIIGTQPESIDRAEDRELFKVMLKKLGLVQPENGTAMDIPGTLAIAEEIGYPVIVRP 717

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192
                   + ++    ++     ++   + G  +LI+++++       V  DA  D    
Sbjct: 718 SFVLGGRAMKIVYDSSALEEFAREAIVASEGHPVLIDKFLEN---AVEVDVDAVCDGETT 774

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
            V     +  E    S +S  VLP K +  +I  +++       + +   G+   +  + 
Sbjct: 775 IVAGIMEHIEEAGIHSGDSACVLPPKSLSENIKNQIRTATQALAKELNVIGL--MNIQYA 832

Query: 252 PLSRKVFWLEINV 264
               ++F +E+N 
Sbjct: 833 VKDEELFVIEVNP 845


>gi|281355629|ref|ZP_06242123.1| urea carboxylase [Victivallis vadensis ATCC BAA-548]
 gi|281318509|gb|EFB02529.1| urea carboxylase [Victivallis vadensis ATCC BAA-548]
          Length = 1199

 Score = 76.3 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 42/257 (16%), Positives = 87/257 (33%), Gaps = 32/257 (12%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+       E   I +             K R++++     VP+ P    
Sbjct: 77  AIHPGYGFLSENADFARQCEAAGIVFIGPTPEQLVDFGLKHRARELAQRFEVPLVPGSGL 136

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQL 166
           +      +++   I  P ++K   GG  +G+ V + D  +     +    +        L
Sbjct: 137 LPTAEAALEAARGIGYPVMLKSTAGGGGIGMCVCRSDAELAAGFERIGRLSRNNFKDSGL 196

Query: 167 LIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIY 224
            +E+YV+    +   + GD    V  +            K          PA  +P    
Sbjct: 197 FVEKYVECSRHIEVQLFGDGRGHVAILGERDCSTQRRNQK-----VIEETPAPGLPEATR 251

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
             +   A    + +  R     +F++D  +   ++LE+N             +    G +
Sbjct: 252 AALHAAARRLGEGVAYRSAGTVEFIYDCRTGDFYFLEVNT-----------RLQVEHGVT 300

Query: 285 ---FR-ELLLWMVEDAS 297
              F  +L+ WM+ +A+
Sbjct: 301 EAVFGIDLVKWMILEAA 317


>gi|296133333|ref|YP_003640580.1| carbamoyl-phosphate synthase, large subunit [Thermincola sp. JR]
 gi|296031911|gb|ADG82679.1| carbamoyl-phosphate synthase, large subunit [Thermincola potens JR]
          Length = 1074

 Score = 76.3 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 31/228 (13%), Positives = 86/228 (37%), Gaps = 19/228 (8%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           L    +    + +    ++ D+ +  Q++   G+P  P           +    I  P +
Sbjct: 653 LAQAGVNILGTAVKYIDMAEDRDKFDQLLQDLGIPKPPGRTATSVEGAQEIAEEIGFPVL 712

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS--- 186
           ++P        + ++     +   +  + + +    +L+++Y+ G E+    + D     
Sbjct: 713 VRPSYVLGGRAMEIVYNQDELLEYMKSAVNVSPKHPVLVDKYLVGKEIEVDAISDGEDVL 772

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISR 245
           +      + ++  +S        +S  V PA+ +P ++ ++V        +A+  +G+  
Sbjct: 773 IPGIMEHIERAGVHS-------GDSIAVYPARSLPENLVRDVVDYTTKLARALHVKGLIN 825

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
             ++      +++ LE+N +   T     P ++   G     L   M+
Sbjct: 826 IQYVLHE--DRIYVLEVNPRSSRT----VPYISKITGVPMVNLATKMI 867



 Score = 63.6 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 46/287 (16%), Positives = 107/287 (37%), Gaps = 35/287 (12%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQID---------------------VDRSVGLV 45
           G ++E + +   G     AL++ G +V  ++                         V  +
Sbjct: 21  GQAAEFDYA---GTQACRALKEEGLEVVLVNSNPATIMTDANIADRVYIEPLTADFVARI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   KPD     L G  G +  V    + IL+   +    + +     + D+   + +++
Sbjct: 78  IKKEKPDGLLPTLGGQVGLNIAVELAERGILQEEGVALLGTPLETIKKAEDREMFRNMMN 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
               P+  S++V+     +     I  P +++P       G  +    + +     +   
Sbjct: 138 EIKEPIPESVIVDNVDDAVVFAERIGFPVIVRPAYTLGGTGGGIANNVEELKAITTRGLK 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   Q LIE+ V G  E+   V+ D++ +   +   ++      +   + +S  V P++
Sbjct: 198 MSMIKQCLIERSVAGWKEIEYEVIRDSNDNCITVCNMEN---IDPVGIHTGDSIVVAPSQ 254

Query: 219 -IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +    Y+ ++  +    +A+G  G     F  +P S +   +E+N 
Sbjct: 255 TLSDKEYQMLRAASLKIIRALGIEGGCNVQFALNPNSFEYIVIEVNP 301


>gi|222151419|ref|YP_002560575.1| biotin carboxylase subunit of acetyl-CoA carboxylase [Macrococcus
           caseolyticus JCSC5402]
 gi|222120544|dbj|BAH17879.1| biotin carboxylase subunit of acetyl-CoA carboxylase [Macrococcus
           caseolyticus JCSC5402]
          Length = 449

 Score = 76.3 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 34/216 (15%), Positives = 78/216 (36%), Gaps = 15/216 (6%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVN 114
           +G   E+     + E  +I +   G  + +    K  +K+ +   GVPV P     +   
Sbjct: 81  YGFLAENARFAEMCEACQIKFIGPGHQSISKMGIKDVAKKEMIKAGVPVVPGSDGLLEDV 140

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP-----LDLLQSSSWNHGDQLLIE 169
              +     +  P +IK   GG   GI V + +Q +       +    +++ +    L E
Sbjct: 141 ESALKLAETMGYPVIIKATAGGGGKGIRVARNEQELRDGYRMTEQEAETAFGNKGLYL-E 199

Query: 170 QYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           ++++    +   V+ D   +                +             I       + 
Sbjct: 200 KFIENFRHVEIQVLADQYGNTLHFGERDCTI----QRRMQKLVEESPSPYIDEATRYAMG 255

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + A  A +A+   G    +F++D  +++ +++E+N 
Sbjct: 256 QAAINAAKAVNYEGAGTVEFIYDIDAKQFYFMEMNT 291


>gi|206971422|ref|ZP_03232372.1| putative acetyl-CoA carboxylase, biotin carboxylase [Bacillus
           cereus AH1134]
 gi|218231756|ref|YP_002367223.1| acetyl-CoA carboxylase biotin carboxylase subunit [Bacillus cereus
           B4264]
 gi|228939661|ref|ZP_04102243.1| Biotin carboxylase [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|228952870|ref|ZP_04114939.1| Biotin carboxylase [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
 gi|228958776|ref|ZP_04120488.1| Biotin carboxylase [Bacillus thuringiensis serovar pakistani str.
           T13001]
 gi|228972522|ref|ZP_04133129.1| Biotin carboxylase [Bacillus thuringiensis serovar thuringiensis
           str. T01001]
 gi|228979132|ref|ZP_04139479.1| Biotin carboxylase [Bacillus thuringiensis Bt407]
 gi|229070018|ref|ZP_04203294.1| Biotin carboxylase [Bacillus cereus F65185]
 gi|229079714|ref|ZP_04212247.1| Biotin carboxylase [Bacillus cereus Rock4-2]
 gi|229150739|ref|ZP_04278953.1| Biotin carboxylase [Bacillus cereus m1550]
 gi|229193928|ref|ZP_04320841.1| Biotin carboxylase [Bacillus cereus ATCC 10876]
 gi|206733407|gb|EDZ50579.1| putative acetyl-CoA carboxylase, biotin carboxylase [Bacillus
           cereus AH1134]
 gi|218159713|gb|ACK59705.1| putative acetyl-CoA carboxylase, biotin carboxylase [Bacillus
           cereus B4264]
 gi|228589569|gb|EEK47475.1| Biotin carboxylase [Bacillus cereus ATCC 10876]
 gi|228632826|gb|EEK89441.1| Biotin carboxylase [Bacillus cereus m1550]
 gi|228703554|gb|EEL56007.1| Biotin carboxylase [Bacillus cereus Rock4-2]
 gi|228713119|gb|EEL65018.1| Biotin carboxylase [Bacillus cereus F65185]
 gi|228780607|gb|EEM28827.1| Biotin carboxylase [Bacillus thuringiensis Bt407]
 gi|228787205|gb|EEM35177.1| Biotin carboxylase [Bacillus thuringiensis serovar thuringiensis
           str. T01001]
 gi|228800915|gb|EEM47820.1| Biotin carboxylase [Bacillus thuringiensis serovar pakistani str.
           T13001]
 gi|228806826|gb|EEM53376.1| Biotin carboxylase [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
 gi|228819999|gb|EEM66042.1| Biotin carboxylase [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|326940252|gb|AEA16148.1| acetyl-CoA carboxylase biotin carboxylase subunit [Bacillus
           thuringiensis serovar chinensis CT-43]
          Length = 445

 Score = 76.3 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 80/220 (36%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       +   I +             K+ S+  + +  VPV P I  
Sbjct: 77  AIHPGYGLLSENPSFPVRCKEEGIVFIGPSEEIITKMGSKIESRIAMQAADVPVVPGITT 136

Query: 114 N----RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
           N       ++    I  P ++K   GG  +G+ +++ +Q++         ++ ++    +
Sbjct: 137 NIETAEEAIEIAKQIGYPLMLKASAGGGGIGMQLMETEQTLTKAFESNKTRAQNFFGNGE 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+Y+ D   +   ++ D   +   +   +        K             +     
Sbjct: 197 MYLERYIADAHHIEIQLLADTHGNTVYLWERECSVQRRNQK----VIEEAPSPFLDEGTR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K +  +A  A +A+G       +FL D      ++LE+N 
Sbjct: 253 KAMGEVAVQAAKALGYTNAGTVEFLVDDQKN-FYFLEMNT 291


>gi|213693136|ref|YP_002323722.1| Carbamoyl-phosphate synthase L chain, ATP-binding [Bifidobacterium
           longum subsp. infantis ATCC 15697]
 gi|213524597|gb|ACJ53344.1| Carbamoyl-phosphate synthase L chain, ATP-binding [Bifidobacterium
           longum subsp. infantis ATCC 15697]
 gi|320459315|dbj|BAJ69936.1| propionyl-CoA carboxylase alpha subunit [Bifidobacterium longum
           subsp. infantis ATCC 15697]
          Length = 629

 Score = 76.3 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 81/230 (35%), Gaps = 13/230 (5%)

Query: 42  VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +  +L     D      +G   E       +E     +      A     DK+ +++V  
Sbjct: 69  LIDILRKTGADAVHPG-YGFLSEVPSFAQKVEDAGAIWVGPHHTALVDLGDKITARRVAL 127

Query: 102 SCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
              VP  P     +   R  +D  H    P ++K   GG   GI V+  D+ +    +  
Sbjct: 128 RAKVPPVPGLSEPVTDVRTLLDFAHTHGYPIMMKRTDGGGGHGITVVHDDEELRRFYMNH 187

Query: 158 SSWNHGD--QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHV 214
            +   GD  +  IE++VD    +      D+  + T  +           K         
Sbjct: 188 DALQGGDLKEYFIEKFVDKARHVETQSGRDSHGNFTVYSTRDCSLQRRNQK----LVEEA 243

Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
               +P +I   ++  +      +G  G+   +F+  P + KV++LE+N 
Sbjct: 244 PAPFLPEEIISTLEEYSRRLFTTVGYVGLGTCEFMVTP-NGKVYFLEVNP 292


>gi|149181740|ref|ZP_01860232.1| acetyl-CoA carboxylase [Bacillus sp. SG-1]
 gi|148850588|gb|EDL64746.1| acetyl-CoA carboxylase [Bacillus sp. SG-1]
          Length = 448

 Score = 76.3 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 30/198 (15%), Positives = 73/198 (36%), Gaps = 14/198 (7%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIK 131
            I +         +  DK+ +++ + +  VPV P     +        +   I  P ++K
Sbjct: 98  GITFIGPSAEVMEMMGDKVAARKTMLAANVPVVPGSDGGVASIEEAKTAAESIGYPVMLK 157

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQLLIEQYVD-GIELTCGVMGDAS 186
              GG  +G+I    +Q++         ++ ++   D++ +E+ +D    +   + GD  
Sbjct: 158 ASSGGGGIGMIRCNDEQALVQSFDSTKNRAKAYFGHDEVFLEKCIDNARHIEIQIFGDEK 217

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRS 246
            ++  +            K            ++  D  +++   A  A +A+        
Sbjct: 218 GNIIHLFERNCSVQRRNQK----VIEEAPSPQLSQDAKEKMYEAAVRAGKAVNYVNAGTV 273

Query: 247 DFLFDPLSRKVFWLEINV 264
           +F+ D      ++LE+N 
Sbjct: 274 EFIVDNDEN-FYFLEMNT 290


>gi|302544522|ref|ZP_07296864.1| acetyl/propionyl-CoA carboxylase, alpha subunit [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302462140|gb|EFL25233.1| acetyl/propionyl-CoA carboxylase, alpha subunit [Streptomyces
           himastatinicus ATCC 53653]
          Length = 651

 Score = 76.3 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 46/212 (21%), Positives = 85/212 (40%), Gaps = 17/212 (8%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
           +G   ED      +    + +      A      K R+K+++   GVP+  S+  +R   
Sbjct: 84  YGFLSEDAAFAQAVRDAGLLWIGPPPAAMQAMASKTRAKRLLRDAGVPLLDSLDPDRVAA 143

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGDQLLIEQYVDG 174
           D       P +IK   GG   G+ V+++  ++  +L     ++ S     ++ +E YV+G
Sbjct: 144 DD-----LPVLIKAAAGGGGRGMRVVREAPALAAELTSARAEAVSAFGDGEVFVEPYVEG 198

Query: 175 -IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAF 232
              +   V+ D     T  AV         L+          PA  +  ++ + ++  A 
Sbjct: 199 ARHVEVQVLAD-----THGAVWSLGTRDCSLQRRHQKVIEEAPAPGLSDELRRLLEESAV 253

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            A +AIG  G    +FL     R  ++LE+N 
Sbjct: 254 NAARAIGYEGAGTVEFLVSSAGRA-YFLEMNT 284


>gi|150389825|ref|YP_001319874.1| hypothetical protein Amet_2054 [Alkaliphilus metalliredigens QYMF]
 gi|149949687|gb|ABR48215.1| protein of unknown function DUF201 [Alkaliphilus metalliredigens
           QYMF]
          Length = 414

 Score = 76.3 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 43/250 (17%), Positives = 91/250 (36%), Gaps = 26/250 (10%)

Query: 32  KVSQIDVD--RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
              ++D +  + + L +  +K D         + E   V+++     +P      L    
Sbjct: 56  NTIEVDTNNIKELILAVKDIKFDGVITACD-YYFE--AVRSVANEFGLPCPLPNNLKHIR 112

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVIKKD 147
              K   +Q + S  +      L N +     +   I  P +IKP+   SS  + +IK +
Sbjct: 113 --QKHLMRQTLESSDIANVIFRLANSWEEIVAAARQIGYPLIIKPVDLDSSSFVRLIKNE 170

Query: 148 QSIPLDLLQSSSWN-------HGDQLLIEQYVDGIELTC-GVMGDASLDVTEIAVPKSDF 199
           + +         ++           +L+E+++ G E++   V  +    +  I       
Sbjct: 171 EELKEAFDALEEFSVNYREQPRNSVVLLEEFLPGEEVSVESVSFEGKTTIIGIT-----D 225

Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR-GISRSDFLFDPLSRKVF 258
            S   K   + + H+ PA +  + Y+E+         A+G   G++ ++           
Sbjct: 226 KSLIGKPYFIETGHMFPANMDENKYEEITEYVKSVLDAVGFENGVAHTEVKLTKSG--PR 283

Query: 259 WLEINV-QPG 267
            +EIN   PG
Sbjct: 284 IIEINPRVPG 293


>gi|328792966|ref|XP_396680.4| PREDICTED: methylcrotonoyl-CoA carboxylase subunit alpha,
           mitochondrial-like [Apis mellifera]
          Length = 688

 Score = 76.3 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 76/221 (34%), Gaps = 41/221 (18%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       +   I +      A      K  SK +++  G+PV      
Sbjct: 107 AIHPGYGFLSENAEFAEFCQKENIIFIGPPANAIKNMGIKSTSKNIMTKAGIPVIAGYHG 166

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS-----SWNHGD 164
              + +        I  P +IK + GG   G+ ++ K+      L  +      ++N   
Sbjct: 167 KDQSNEILLLKAKKIGFPLMIKAICGGGGKGMRIVLKESEFIEALECAKIECENAFN-DS 225

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            +L+EQY++    +   V  D   ++  I                             ++
Sbjct: 226 AILLEQYINNPRHIEIQVFADKHGNIPGI---------------------------SANL 258

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             ++  +A    + +G  G    +F+ D  +   +++E+N 
Sbjct: 259 RSDLGTIAIKVAKTVGYIGAGTVEFIMDCNTNNFYFMEMNT 299


>gi|253996518|ref|YP_003048582.1| pyruvate carboxylase subunit A [Methylotenera mobilis JLW8]
 gi|253983197|gb|ACT48055.1| acetyl-CoA carboxylase, biotin carboxylase [Methylotenera mobilis
           JLW8]
          Length = 472

 Score = 76.3 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 44/250 (17%), Positives = 91/250 (36%), Gaps = 23/250 (9%)

Query: 32  KVSQIDVDRSVGLVLAHLKPDLAF----NVLHGNFG---EDGLVQAILELLEIPYTHSGI 84
           +   I  D   G + AH   +LA     + LH  +G   E+  +  I E   + +     
Sbjct: 47  EAYHIGTDPVAGYLNAHNIVNLAVAAGCDALHPGYGFLSENPELAEICERRGVKFIGPNA 106

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSLG 140
                  DK++++  ++  G+P  P    N   ++      + I  P ++K   GG   G
Sbjct: 107 DVIRQMGDKIQARNAMTKAGIPCTPGSNGNLKDLEEAVALANKIGYPVMLKATNGGGGRG 166

Query: 141 IIVIKKDQSI----PLDLLQSSSWNHGDQLLIEQ-YVDGIELTCGVMGDASLDVTEIAVP 195
           I     ++ +       + ++S      ++ IE+  V    +   V+ D+  +   +   
Sbjct: 167 IRRCDSEKELLGNYDRVISEASKAFGKPEVFIEKCVVSPRHIEVQVLADSQGNAIHLFER 226

Query: 196 KSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
                    K        + P  ++     + +  LA  A +A+G       +FL D   
Sbjct: 227 DCSIQRRNQKL-----IEIAPSPQLSQAQREYIGGLAVKAAKAVGYENAGTVEFLLD-SD 280

Query: 255 RKVFWLEINV 264
              +++E+N 
Sbjct: 281 NTFYFMEMNT 290


>gi|206891197|ref|YP_002249059.1| carbamoyl-phosphate synthase, large subunit [Thermodesulfovibrio
           yellowstonii DSM 11347]
 gi|206743135|gb|ACI22192.1| carbamoyl-phosphate synthase, large subunit [Thermodesulfovibrio
           yellowstonii DSM 11347]
          Length = 1105

 Score = 76.3 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 55/278 (19%), Positives = 105/278 (37%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL+  G++V  ++ + +                     + L++   +PD    
Sbjct: 29  SGAQACKALKQEGYQVVLVNSNPATIMTDPSMADSTYIEPLTAEILELIIKKERPDALLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G    +  VQ     IL+   +    + + A   + D+   KQ ++  G+ V  S  
Sbjct: 89  TLGGQTALNLAVQLGEAGILDRYSVELIGANLHAIKKAEDRELFKQAMTKIGLEVPRSAA 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           V+  +  +++   I  P +++P       G  V    +     L +    +   Q+LIE+
Sbjct: 149 VHSLKEGLEAIDYIGFPAILRPAFTLGGTGGGVAYNIEEFKELLERGLKLSPVSQVLIEE 208

Query: 171 YVDG-IELTCGVMGDASL-DVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            + G  E    VM D S   V   ++   D           +S  V P + +    Y+ +
Sbjct: 209 SLLGWKEFELEVMRDKSDNVVIVCSIENFDPMGVHT----GDSITVAPVQTLTDREYQIM 264

Query: 228 QRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
           +  A  A + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RDNAIKAIREIGVDTGGSNIQFAVNPKNGRMVIIEMNP 302



 Score = 66.3 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 28/203 (13%), Positives = 79/203 (38%), Gaps = 13/203 (6%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           LE   +    +   A   + D+ R K++V    +   PS         +     +  P +
Sbjct: 683 LESHGVNILGTSADAIDRAEDRKRFKELVDKLNLKQPPSETATSLEEALKIADTLGYPIL 742

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  ++S+   + ++   +    +LI++Y+ D IE+    + D +  
Sbjct: 743 VRPSYVLGGRAMEIVYDEESLRRYMREAVKASEDHPVLIDRYLEDAIEVDVDAISDGADV 802

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           V    +   +       +S  ++  + P  +  +I ++++       + +  +G+   + 
Sbjct: 803 VVAGIMQHIEEAGI---HSGDSACSLPPYSLSQEIIQKIKEETISIAKELKVKGL--MNV 857

Query: 249 LFDPLSRKVFWLEIN-----VQP 266
            +     +++ LE+N       P
Sbjct: 858 QYAVKDSEIYVLEVNPRASRTIP 880


>gi|15895918|ref|NP_349267.1| pyruvate carboxylase [Clostridium acetobutylicum ATCC 824]
 gi|15025689|gb|AAK80607.1|AE007763_6 Pyruvate carboxylase, PYKA [Clostridium acetobutylicum ATCC 824]
 gi|325510070|gb|ADZ21706.1| pyruvate carboxylase [Clostridium acetobutylicum EA 2018]
          Length = 1144

 Score = 76.3 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 43/249 (17%), Positives = 91/249 (36%), Gaps = 29/249 (11%)

Query: 38  VDRSVGLVLAHLKPDLAFN--------VLHGNFG---EDGLVQAILELLEIPYTHSGILA 86
           + ++ G V A+L  D   N         +H  +G   E+           I +       
Sbjct: 54  IGQNKGPVDAYLNIDEIINLALKKGVDAIHPGYGFLSENSEFSRRCTEAGIEFIGPTGDM 113

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSIL----VNRFTMDSQHLISPPYVIKPLKGGSSLGII 142
                DK+ SK    + GV   P +       +  ++       P ++K   GG   G+ 
Sbjct: 114 MDKLGDKINSKLAAKAAGVKTIPGVEKPIETEQQAIEFARTCGYPVMVKAAAGGGGRGMR 173

Query: 143 VIKKDQSIPLDLLQS-----SSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPK 196
           +++K++ +      +      ++   D + IE+Y++G   +   V+GD   ++  +    
Sbjct: 174 IVEKEEDLIAACRSAKSEAKKAFGIED-IFIEKYLEGPKHIEVQVLGDKYGNIVHLYE-- 230

Query: 197 SDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255
                  ++        + PA  +  +   E+   A    ++IG R     +FL D    
Sbjct: 231 ---RDCSVQRRHQKVIELTPAVSMSEEKRLEICEDALKIARSIGYRSAGTLEFLLDKHGN 287

Query: 256 KVFWLEINV 264
             +++E+N 
Sbjct: 288 H-YFIEMNP 295


>gi|15600041|ref|NP_253535.1| acetyl-CoA carboxylase biotin carboxylase subunit [Pseudomonas
           aeruginosa PAO1]
 gi|107103947|ref|ZP_01367865.1| hypothetical protein PaerPA_01005018 [Pseudomonas aeruginosa PACS2]
 gi|116052996|ref|YP_793314.1| acetyl-CoA carboxylase biotin carboxylase subunit [Pseudomonas
           aeruginosa UCBPP-PA14]
 gi|152986858|ref|YP_001350889.1| acetyl-CoA carboxylase biotin carboxylase subunit [Pseudomonas
           aeruginosa PA7]
 gi|254238430|ref|ZP_04931753.1| biotin carboxylase [Pseudomonas aeruginosa C3719]
 gi|296391681|ref|ZP_06881156.1| acetyl-CoA carboxylase biotin carboxylase subunit [Pseudomonas
           aeruginosa PAb1]
 gi|313109840|ref|ZP_07795774.1| biotin carboxylase [Pseudomonas aeruginosa 39016]
 gi|584713|sp|P37798|ACCC_PSEAE RecName: Full=Biotin carboxylase; AltName: Full=Acetyl-CoA
           carboxylase subunit A; Short=ACC
 gi|9951119|gb|AAG08233.1|AE004898_4 biotin carboxylase [Pseudomonas aeruginosa PAO1]
 gi|405541|gb|AAA16041.1| biotin carboxylase [Pseudomonas aeruginosa PAO1]
 gi|115588217|gb|ABJ14232.1| biotin carboxylase [Pseudomonas aeruginosa UCBPP-PA14]
 gi|126170361|gb|EAZ55872.1| biotin carboxylase [Pseudomonas aeruginosa C3719]
 gi|150962016|gb|ABR84041.1| acetyl-CoA carboxylase, biotin carboxylase [Pseudomonas aeruginosa
           PA7]
 gi|310882276|gb|EFQ40870.1| biotin carboxylase [Pseudomonas aeruginosa 39016]
          Length = 449

 Score = 76.3 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 74/222 (33%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         L  DK+ +K  +   GVP  P    
Sbjct: 77  AIHPGYGFLAENADFAEQIERSGFTFVGPTAEVIRLMGDKVSAKDAMKRAGVPTVPGSDG 136

Query: 112 LVNRFTMDS---QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGD 164
            +      +      +  P +IK   GG   G+ V+  +  +         ++ +     
Sbjct: 137 PLPEDEETALAIAREVGYPVIIKAAGGGGGRGMRVVYDESELIKSAKLTRTEAGAAFGNP 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+++     +   V+ D   +               L+          PA  I   
Sbjct: 197 MVYLEKFLTNPRHVEVQVLSDGQGNAI-----HLGDRDCSLQRRHQKVIEEAPAPGIDEK 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +EV      A   IG RG    +FL+   + + +++E+N 
Sbjct: 252 ARQEVFARCVQACIEIGYRGAGTFEFLY--ENGRFYFIEMNT 291


>gi|288905532|ref|YP_003430754.1| carbamoyl-phosphate synthase, large subunit [Streptococcus
           gallolyticus UCN34]
 gi|288732258|emb|CBI13825.1| carbamoyl-phosphate synthase, large subunit [Streptococcus
           gallolyticus UCN34]
          Length = 1059

 Score = 76.3 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 26/228 (11%), Positives = 76/228 (33%), Gaps = 19/228 (8%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYV 129
           L    +    + +     + D+   +Q +    +P  P           ++   I  P +
Sbjct: 646 LSKAGVAILGTQVADLDRAEDRDLFEQALKELDIPQPPGQTATNEEEAVEAARKIGFPVL 705

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS--- 186
           ++P        + +++ ++ +   +  +   +    +L++ Y+ G E     + D     
Sbjct: 706 VRPSYVLGGRAMEIVENEEDLRSYMRTAVKASPDHPVLVDSYIVGRECEVDAISDGKDVL 765

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISR 245
           +      + ++  +S        +S  V P + +   I   +          + C G+  
Sbjct: 766 IPGIMEHIERAGVHS-------GDSMAVYPPQTLSKKIQDTIADYTKRLAIGLNCFGMMN 818

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
             F+       V+ +E+N +   T     P ++        ++   ++
Sbjct: 819 IQFVI--KDETVYVIEVNPRASRT----VPFLSKVTNIPMAQVATKLI 860



 Score = 72.1 bits (176), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 49/296 (16%), Positives = 106/296 (35%), Gaps = 34/296 (11%)

Query: 25  ALEDAGFKVSQID-------VDRSVGLV--------------LAHLKPDLAFNVLHGNFG 63
           AL++ G+ V  ++        D+ +                 +   +PD     L G  G
Sbjct: 36  ALKEEGYSVVLVNSNPATIMTDKEIADQVYIEPLTLEFVTRIIRKERPDALLPTLGGQTG 95

Query: 64  EDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFT 117
            +  ++     IL+ L +    + + A   + D+   KQ++     P+  S +VN     
Sbjct: 96  LNMSMELSRAGILDELGVELLGTKLSAIDQAEDRDLFKQLMEDLNQPIPESEIVNTVDEA 155

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IE 176
           +     I  P +++P       G  +   ++ +          +   Q LIE+ + G  E
Sbjct: 156 VAFAESIGYPVIVRPAFTLGGTGGGMCDNEEELREIAENGLKLSPVTQCLIERSIAGFKE 215

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +   VM DA+ +   + V   + +     ++  +        +     + ++  +    +
Sbjct: 216 IEYEVMRDAADNA--LVVCNMENFDPVGIHTGDSIVFAPTQTLSDIENQMLRDASLSIIR 273

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           A+   G        DP S K + +E+N  P ++  S     +   GY   +L   +
Sbjct: 274 ALKIEGGCNVQLALDPNSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAKI 325


>gi|157374594|ref|YP_001473194.1| carbamoyl-phosphate synthase L chain, ATP-binding [Shewanella
           sediminis HAW-EB3]
 gi|157316968|gb|ABV36066.1| carbamoyl-phosphate synthase L chain, ATP-binding [Shewanella
           sediminis HAW-EB3]
          Length = 691

 Score = 76.3 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 80/221 (36%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+     + E   I +      A      K  +K+++ +  VP+ P    
Sbjct: 77  AIHPGYGFLSENADFARLCEQSGISFVGPTADAIDSMGSKSAAKEIMGAANVPLVPGYHG 136

Query: 114 NRFT----MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
           +       +D    +  P +IK   GG   G+ +++    +   +  +          D+
Sbjct: 137 DAQEDQLLVDEADKMGFPLLIKAAFGGGGKGMRIVESSDEVLEAIQSARREAISSFGNDK 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           LL+E+Y+     +   V  D   +   ++           K          PA  +  ++
Sbjct: 197 LLMERYLRQPRHVEVQVFADTQGNCIYLSDRDCSIQRRHQK-----VVEEAPAPGLSDEL 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             ++   A  A +AI  RG    +FL D      +++E+N 
Sbjct: 252 RVKMGEAAVAAAKAIDYRGAGTVEFLLDT-DGSFYFMEMNT 291


>gi|324999504|ref|ZP_08120616.1| pyruvate carboxylase [Pseudonocardia sp. P1]
          Length = 1126

 Score = 76.3 bits (187), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 38/246 (15%), Positives = 80/246 (32%), Gaps = 16/246 (6%)

Query: 28  DAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87
           + G  V        V         D  +   +G   E+  +        I +        
Sbjct: 53  EPGHPVRAYLSVDEVVRAATKAGADAVYPG-YGFMSENPDLARACREEGITFVGPPTEVL 111

Query: 88  ALSMDKMRSKQVVSSCGVPVCPS---ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
            L+ +K R+     + GVPV  S          + +  ++  P  +K + GG   G+  +
Sbjct: 112 HLTGNKSRAVAAAKAAGVPVLASSEPTTDVDALVAAAEVMEFPVFVKAVAGGGGRGMRQV 171

Query: 145 KKDQSIPLDLLQS-----SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDF 199
            +  ++   +  +     S++  G   L +  VD   +   ++ DA  +V          
Sbjct: 172 TEPGALREAIEAASREAESAFGDGTVFLEQAVVDPRHIEVQILADAEGNVV-----HLFE 226

Query: 200 YSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
               ++        + PA  +   +   +   A    + IG       +FL D   +   
Sbjct: 227 RDCSVQRRHQKVVEIAPAPNLDPRVRDAICADAVRFAREIGYVNAGTVEFLLDERGKH-H 285

Query: 259 WLEINV 264
           ++E+N 
Sbjct: 286 FIEMNP 291


>gi|324998419|ref|ZP_08119531.1| acetyl-CoA carboxylase biotin carboxylase subunit [Pseudonocardia
           sp. P1]
          Length = 464

 Score = 76.3 bits (187), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 39/224 (17%), Positives = 73/224 (32%), Gaps = 22/224 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC----- 108
            LH  +G   E   +        + +          + DKM +++V    G+P+      
Sbjct: 80  ALHPGYGFLSERPELADACADNGVVFVGPSGEIMRRAGDKMTAREVAEKAGIPIGGRSRP 139

Query: 109 ---PSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL----DLLQSSSWN 161
               +      +    +  S P ++K   GG   G+ +I+    I         ++    
Sbjct: 140 LQSRAEAEEALSEALDNGASLPMMLKASAGGGGRGMSIIRDAAEIGPRFDTAHREAEQAF 199

Query: 162 HGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KI 219
              +L +E+YV     +   V+ DA   V               +          PA  +
Sbjct: 200 GDGRLYLERYVAKARHVEVQVLADAYGTVC-----HLGDRDCSTQRRHQKLVEEGPAPDL 254

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
           P  +  E++  A      +G  G    +FL D       +LE+N
Sbjct: 255 PAALSAEIRGAAVRLASELGYVGAGTVEFLVDVDRGDFVFLEVN 298


>gi|257784417|ref|YP_003179634.1| carbamoyl-phosphate synthase, large subunit [Atopobium parvulum DSM
           20469]
 gi|257472924|gb|ACV51043.1| carbamoyl-phosphate synthase, large subunit [Atopobium parvulum DSM
           20469]
          Length = 1073

 Score = 76.3 bits (187), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 47/279 (16%), Positives = 98/279 (35%), Gaps = 37/279 (13%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL   GF+V  +         D +             SV  V+   +PD    
Sbjct: 29  SGTQACRALRKEGFEVVLVNSNPATIMTDPETADRTYVEPITVESVTRVIERERPDALLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      +L+   I      + +     D+    + V   G+ V  + +
Sbjct: 89  NMGGQTALNCTIGLGEAGVLDKYNIEVIGCNLDSIRTGEDRELFSEAVQDIGLEVARADI 148

Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +      +    +  P VI+P       G  +    + +   + Q    +   ++L+E+
Sbjct: 149 AHSMEDAQRIVADLGYPVVIRPSFTLGGAGGGIAHTPEELVEIVEQGLLLSPEHEVLVEE 208

Query: 171 YVDG-IELTCGVMGDASL-DVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            ++G  E+   VM D +   +   ++   D           +S  V PA+ +     + +
Sbjct: 209 SIEGWKEIEMEVMRDTTGNGIVVCSIENLDPMGVHT----GDSITVAPAQTLTDKELQNL 264

Query: 228 QRLAFLAHQAIG--CRGISRSDFLFDPLSRKVFWLEINV 264
           +  +    + +G  C G S   F  +P + +V  +E+N 
Sbjct: 265 RDYSIAILERVGVACGG-SNVQFAVNPTNGRVIVIEMNP 302



 Score = 62.8 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 44/291 (15%), Positives = 100/291 (34%), Gaps = 33/291 (11%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAI---- 71
           AL + G++   +         D D S  L    L  +   +V+     E G++  +    
Sbjct: 586 ALREQGYETVMVNCNPETVSTDYDTSDRLYFQPLTFEDVMDVIEVEKPE-GVIVTLGGQT 644

Query: 72  -------LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQH 122
                  L+   +P   +   A  L+ D+ R   ++    +   PS + +      D+  
Sbjct: 645 PIKLARALKDAGVPIMGTQPEAIDLAEDRDRFAALLDRLNIACPPSAVASTMDEARDAAR 704

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGV 181
            I  P +++P       G+ ++  D  +   +  ++       + ++ ++ D IEL    
Sbjct: 705 RIGYPLIVRPSYVLGGRGMAIVYDDSDLVTYMKSATHVTPDRPVYLDAFLEDAIELDVDA 764

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241
           + D         +   +       +S  ++    P  +   I  +++ +      A   R
Sbjct: 765 LCDTEECYVGSVLEHIEECGI---HSGDSACCWPPFSLSEKIVGQIRAITKKLALACDIR 821

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           G+   +  +      VF +E+N +   T     P  +   G S  +    +
Sbjct: 822 GL--LNIQYAVRDEHVFVIELNPRASRT----VPFSSKATGVSLAKFASRI 866


>gi|224283638|ref|ZP_03646960.1| JadJ [Bifidobacterium bifidum NCIMB 41171]
 gi|310288101|ref|YP_003939360.1| acetyl-/propionyl-CoA carboxylase alpha chain [Bifidobacterium
           bifidum S17]
 gi|309252038|gb|ADO53786.1| Acetyl-/propionyl-CoA carboxylase alpha chain [Bifidobacterium
           bifidum S17]
          Length = 636

 Score = 76.3 bits (187), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 45/220 (20%), Positives = 84/220 (38%), Gaps = 17/220 (7%)

Query: 56  NVLHGNFGEDGLVQAI---LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
           N +H  +G    V +    +E     +      A     DK+ +++V  S  VP  P I 
Sbjct: 79  NAVHPGYGFLSEVPSFADKVEKAGAIWVGPHPQALIDLGDKITARRVAKSAQVPPVPGIS 138

Query: 113 VN----RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG--DQL 166
                 R  +D  H    P ++K   GG   GI V+  D  +    +   +   G  D+ 
Sbjct: 139 EPVRELRTLLDFSHTYGYPVMMKRTDGGGGRGITVVHDDDEMRRFYMNHDAMQGGDLDEY 198

Query: 167 LIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIY 224
            IE+++D    +      D   D T  +          ++  +       PA  +P ++ 
Sbjct: 199 FIEKFIDKARHVETQCGRDRFGDFTVYST-----RDCSVQRRNQKLVEEAPAPFLPDEVI 253

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +++  +      +   G+   +F+  P  RKV++LE+N 
Sbjct: 254 NQLETYSRSLFNKVDYIGLGTCEFMVTPH-RKVYFLEVNP 292


>gi|254510072|ref|ZP_05122139.1| pyruvate carboxylase [Rhodobacteraceae bacterium KLH11]
 gi|221533783|gb|EEE36771.1| pyruvate carboxylase [Rhodobacteraceae bacterium KLH11]
          Length = 1146

 Score = 76.3 bits (187), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 38/248 (15%), Positives = 84/248 (33%), Gaps = 26/248 (10%)

Query: 38  VDRSVGLVLAHLKPDLAF--------NVLHGNFG---EDGLVQAILELLEIPYTHSGILA 86
           + + +G V A+L  D           + +H  +G   E+           I +       
Sbjct: 53  IGKDLGPVAAYLSIDEIIRVAKESGADAIHPGYGLLSENPDFVDACAQNGITFIGPKAQT 112

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI----SPPYVIKPLKGGSSLGII 142
                DK  +++V  +  VPV P+  V    M +          P ++K   GG   G+ 
Sbjct: 113 MRALGDKASARKVAIAADVPVIPATEVLGDDMAAIKAEAAEIGYPLMLKASWGGGGRGMR 172

Query: 143 VIKKDQSIPLDLLQ----SSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKS 197
            I  +  +   +L+    + +     +  +E+ +     +   ++GD   ++  +     
Sbjct: 173 PILSEDELEEKVLEGRREAEAAFGNGEGYLEKMITRARHVEVQILGDTQGEIYHLYE--- 229

Query: 198 DFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256
                 ++  +       PA  +      E+  L       +        +FL D  + K
Sbjct: 230 --RDCSVQRRNQKVVERAPAPYLSEAQRAEICELGRRICAHVNYECAGTVEFLMDMNTGK 287

Query: 257 VFWLEINV 264
            +++E+N 
Sbjct: 288 FYFIEVNP 295


>gi|138894347|ref|YP_001124800.1| carbamoyl phosphate synthase large subunit [Geobacillus
           thermodenitrificans NG80-2]
 gi|134265860|gb|ABO66055.1| Carbamoylphosphate synthetase heavy subunit [Geobacillus
           thermodenitrificans NG80-2]
          Length = 1042

 Score = 76.3 bits (187), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 55/286 (19%), Positives = 104/286 (36%), Gaps = 33/286 (11%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI----------DVDRS-----------VGLV 45
           G ++E + S   G     AL++ G++V  +          DV              +  +
Sbjct: 21  GQAAEFDYS---GTQACIALKEEGYRVILVNNNPATIMTDDVHADAVYFEPLTVDAIEAI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +A  +PD       G  G +   Q     +LE   +    + I A     D+   + ++ 
Sbjct: 78  IAKERPDGLLATFGGQTGLNLAFQLYEAGVLEKYGVRLLGTPIEAIKRGEDREAFRALMH 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G PV  S +V   +  +     I  P +I+P       G  + +  +     + +  +
Sbjct: 138 ELGEPVPESEIVTNVKEAVAFAEQIGFPIIIRPAYTLGGTGGGIAENMKQFIALVEKGLA 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   Q LIE+ V G  E+   VM D     T I V   +       ++  +        
Sbjct: 198 ESPIRQCLIERSVAGFKEIEYEVMRDQ--SNTCITVCNMENVDPVGVHTGDSIVVAPSQT 255

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +  + Y+ ++  A     A+G  G     F  DP S++ + +E+N 
Sbjct: 256 LTDEEYQMLRSSAVKIISALGIIGGCNIQFALDPNSKQYYLIEVNP 301



 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 40/228 (17%), Positives = 85/228 (37%), Gaps = 22/228 (9%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYV 129
           LE   +              D+ R  Q++    +P  P ++ N           I  P +
Sbjct: 650 LEEAGVRLLGVTYDIIDQLEDRDRFYQLLEELDIPHVPGLMANDAEELVAKAAEIGYPVL 709

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS--- 186
           ++P       G+ +I+ +  +   L++     +   +LI+ Y+DG E    ++ D +   
Sbjct: 710 LRPSYVIGGRGMFIIRSEAQL-AALIEQGELTY--PILIDAYLDGKEAEADIVTDGTDIL 766

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISR 245
           L      V K+  +S        +S   LPA+ +  +    +   A    + +G +GI  
Sbjct: 767 LPTIIEHVEKAGVHS-------GDSYAWLPAQTLTEEERANIVDYARRIAKKLGFKGIMN 819

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
             ++       V+ LE+N +   T     P ++   G    ++   ++
Sbjct: 820 IQYVI--ADGNVYVLEVNPRASRT----VPIVSKTTGVPLAQIATKLL 861


>gi|57239259|ref|YP_180395.1| propionyl-CoA carboxylase alpha chain [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58579222|ref|YP_197434.1| propionyl-CoA carboxylase alpha chain [Ehrlichia ruminantium str.
           Welgevonden]
 gi|57161338|emb|CAH58261.1| putative acetyl-/propionyl-coenzyme A carboxylase alpha chain
           [Ehrlichia ruminantium str. Welgevonden]
 gi|58417848|emb|CAI27052.1| Propionyl-CoA carboxylase alpha chain [Ehrlichia ruminantium str.
           Welgevonden]
          Length = 660

 Score = 76.3 bits (187), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 36/225 (16%), Positives = 82/225 (36%), Gaps = 17/225 (7%)

Query: 52  DLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
           DL    +H  +G   E+      L    I +      +  +  DK+ SK++  S  V + 
Sbjct: 76  DLGVQAVHPGYGFLSENANFPEKLNDYGIEFIGPSADSIRMMADKITSKKIAESAQVNII 135

Query: 109 PSI--LVNRFTMDS--QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSW 160
           P    +V+           I  P +IK   GG   G+ ++K    I         ++S  
Sbjct: 136 PGYMGIVDSSEQAEKIAESIGFPVMIKATAGGGGKGMRIVKSRDEINQAFTSATNEASKN 195

Query: 161 NHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI 219
               ++ IE+Y++    +   ++ D   ++  +   +     +  K             +
Sbjct: 196 FRDGRIFIEKYIELPRHIEIQILADKHGNIVCLGERECSIQRHNQK----VIEETPSPFL 251

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
                +++ +      + +G       +F+ D  +++ ++LE+N 
Sbjct: 252 DERTRRKMYKQCISLARKVGYYSAGTIEFVVD-QNKQFYFLEMNT 295


>gi|84515326|ref|ZP_01002688.1| propionyl-CoA carboxylase, alpha subunit [Loktanella vestfoldensis
           SKA53]
 gi|84510609|gb|EAQ07064.1| propionyl-CoA carboxylase, alpha subunit [Loktanella vestfoldensis
           SKA53]
          Length = 665

 Score = 76.3 bits (187), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 74/221 (33%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      LE   + +      A     DK+ SK++     V   P  + 
Sbjct: 77  AVHPGYGFLSENAKFAEALEAAGVAFIGPPKGAILAMGDKITSKKLAQEANVSTVPGYMG 136

Query: 114 NRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGD 164
                D      + +  P +IK   GG   G+ +   DQ             ++S+   D
Sbjct: 137 LIADADEAVKISNQVGYPVMIKASAGGGGKGMRIAWNDQEAREGFQSSKNEAANSFG-DD 195

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           ++ IE++V     +   V+ D   +   +   +        K             +    
Sbjct: 196 RIFIEKFVTQPRHIEIQVLADQHGNAVYLHERECSIQRRNQK----VIEEAPSPFLDEAT 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            K +   +    QA+G       +F+ D   R  ++LE+N 
Sbjct: 252 RKAMGEQSVALAQAVGYTSAGTVEFIVDG-DRNFYFLEMNT 291


>gi|299065665|emb|CBJ36838.1| Biotin carboxylase (Acetyl-CoA carboxylase subunit A) [Ralstonia
           solanacearum CMR15]
          Length = 456

 Score = 76.3 bits (187), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 81/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H  +G   E+      +E     +         L  DK+ +KQ +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAERVEQSGFTFIGPTPDCIRLMGDKVSAKQAMIKSGVPCVPGSEG 136

Query: 113 ----VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
                 +  + +   +  P +IK   GG   G+ V+  + ++   +     ++       
Sbjct: 137 ALPDDPKEILATARKVGYPVIIKAAGGGGGRGMRVVHTEAALLNAVNMTREEAGRAFGNP 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
           ++ +E++++    +   V+ D   +   +            K          PA  IP  
Sbjct: 197 EVYMEKFLENPRHVEIQVLADQHRNAIWLGERDCSMQRRHQK-----VIEEAPAPHIPRR 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + + +      A + IG RG    +FL+   + + +++E+N 
Sbjct: 252 LIERIGDRCADACKKIGYRGAGTFEFLY--ENGEFYFIEMNT 291


>gi|163750399|ref|ZP_02157639.1| acetyl-CoA carboxylase, biotin carboxylase, putative [Shewanella
           benthica KT99]
 gi|161329889|gb|EDQ00875.1| acetyl-CoA carboxylase, biotin carboxylase, putative [Shewanella
           benthica KT99]
          Length = 705

 Score = 76.3 bits (187), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 41/221 (18%), Positives = 82/221 (37%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       E   + +      A      K  +K+++ +  VP+ P    
Sbjct: 82  AIHPGYGFLSENAEFARKCEQAGVIFVGPTADAIESMGSKSAAKEIMGAANVPLVPGYHG 141

Query: 114 NRFT----MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS----IPLDLLQSSSWNHGDQ 165
           +       ++  + +  P +IK   GG   G+ +++        I     ++SS    D+
Sbjct: 142 DAQDDALLVEEANKMGFPLLIKASYGGGGKGMRIVENSAEVLENIHSARREASSSFGNDK 201

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           LL+E+Y+     +   V  D   +   ++           K          PA  +  ++
Sbjct: 202 LLMERYLRQPRHVEVQVFADNYGNCIYLSDRDCSIQRRHQK-----VVEEAPAPGLSDEL 256

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             E+   A  A +AI  RG    +FL D      +++E+N 
Sbjct: 257 RVEMGEAAVAAAKAIDYRGAGTIEFLLDT-DNSFYFMEMNT 296


>gi|289669924|ref|ZP_06490999.1| biotin carboxylase [Xanthomonas campestris pv. musacearum
           NCPPB4381]
          Length = 675

 Score = 76.3 bits (187), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 75/221 (33%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H  +G   E+           I +      A     DK  +K ++   GVP+ P    
Sbjct: 90  AIHPGYGFLSENAAFAEACAHAGIVFIGPPAAAIRAMGDKSAAKALMQRAGVPLTPGYHG 149

Query: 113 ---VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
                 F       I  P +IK   GG   G+  +    +    L     ++ S      
Sbjct: 150 DEQAPAFLRAQADAIGYPVLIKASAGGGGKGMRRVDASAAFEEALASCQREAQSAFGNAH 209

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           +L+E+YV+    +   V GD   +V  +           ++          PA  +    
Sbjct: 210 VLVEKYVERPRHIEIQVFGDTHGEVVYL-----FERDCSVQRRHQKVLEEAPAPGMSEAR 264

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              + + A  A QA+G  G    +F+  P     +++E+N 
Sbjct: 265 RAAMGKAAVDAAQAVGYVGAGTVEFIAGP-DGDFYFMEMNT 304


>gi|194477123|ref|YP_002049302.1| acetyl-CoA carboxylase [Paulinella chromatophora]
 gi|171192130|gb|ACB43092.1| acetyl-CoA carboxylase [Paulinella chromatophora]
          Length = 452

 Score = 76.3 bits (187), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 78/220 (35%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-SIL 112
            +H  +G   E+     I     + +      +     DK  +K  +   GVP  P S  
Sbjct: 78  AIHPGYGFLAENDRFAEICAAHGLIFVGPAPESIRSMGDKASAKATMQKVGVPTIPGSEG 137

Query: 113 VNRFTMDSQHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSWNHGDQ 165
           + +   ++  L   +  P +IK   GG   G+ ++   + +         ++        
Sbjct: 138 LLKSCQEAARLASYMGYPVMIKATAGGGGKGMRLVNNSEQLESLFKAAQGEAEVAFGNSG 197

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           L IE+++     +   ++ D   ++  +            K             I +D+ 
Sbjct: 198 LYIEKFINRPRHIEVQILADRYGNIVHLGERDCSIQRRHQK----LVEEAPSPAINVDLR 253

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +++   A  A ++I   G    +FL D    K F++E+N 
Sbjct: 254 RQMGEAAIAAARSINYEGAGTVEFLVDK-EGKFFFMEMNT 292


>gi|152976247|ref|YP_001375764.1| carbamoyl phosphate synthase large subunit [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|189081825|sp|A7GRL1|CARB_BACCN RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|152024999|gb|ABS22769.1| carbamoyl-phosphate synthase, large subunit [Bacillus cytotoxicus
           NVH 391-98]
          Length = 1072

 Score = 76.3 bits (187), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 52/314 (16%), Positives = 114/314 (36%), Gaps = 37/314 (11%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQIDVD---------------------RSVGLV 45
           G ++E + S   G     +L++ G+KV  ++ +                       V  +
Sbjct: 21  GQAAEFDYS---GTQACQSLKEEGYKVILVNSNPATIMTDTATADKVYIEPLTLEFVSRI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   +PD     L G  G +  V+     +LE   +    + + A   + D+   + ++ 
Sbjct: 78  IRKERPDAILPTLGGQTGLNMAVELAKSGVLEECGVEILGTKLSAIEQAEDRDLFRTLMQ 137

Query: 102 SCGVPVCPSILVNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
               P  PS +V+      +    I  P +++P       G  +   ++ +   +     
Sbjct: 138 ELNEPTPPSEIVHTLDEAYEFVKEIGYPVIVRPAFTLGGTGGGICHNEEELIEIVTSGLK 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   Q L+E+ + G  E+   VM DA+ +   I V   +       ++  +        
Sbjct: 198 HSPVTQCLLEKSIAGFKEIEYEVMRDANDNA--IVVCNMENIDPVGVHTGDSIVVAPSQT 255

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278
           +    Y+ ++  +    +A+G  G        DP S + + +E+N  P ++  S     +
Sbjct: 256 LSDREYQMLRNTSLRIIRALGIEGGCNVQLALDPYSFQYYVIEVN--PRVSRSS--ALAS 311

Query: 279 AYAGYSFRELLLWM 292
              GY   +L   +
Sbjct: 312 KATGYPIAKLAAKI 325



 Score = 62.1 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 22/210 (10%), Positives = 72/210 (34%), Gaps = 14/210 (6%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPL 133
            +    + +     + D+ + +  ++  G+P             +     I  P +++P 
Sbjct: 650 GVKILGTSLEDLDRAEDRDKFEAALTELGIPQPVGKTATTVEQAVAIAEEIGYPVLVRPS 709

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
                  + ++ + + +   +  +   +    +LI++Y+ G E+    + D         
Sbjct: 710 YVLGGRAMEIVYRQEELLHYMKNAVKVHADHPVLIDRYMVGKEIEVDAISDGENVYIPGI 769

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
           +   +           +S  V P + +   + +++        + +   G+    F+   
Sbjct: 770 MEHIERAGVHS----GDSIGVYPPQSLSAKVKEQIIENTIALGRGLKIVGLLNIQFVVFK 825

Query: 253 LSRKVFWLEIN-----VQPGMTPVSIFPEM 277
              +V+ +E+N       P ++ ++  P  
Sbjct: 826 --DEVYVIEVNPRASRTVPFLSKITGVPMA 853


>gi|148543327|ref|YP_001270697.1| carbamoyl phosphate synthase large subunit [Lactobacillus reuteri
           DSM 20016]
 gi|184152735|ref|YP_001841076.1| carbamoyl phosphate synthase large subunit [Lactobacillus reuteri
           JCM 1112]
 gi|227364395|ref|ZP_03848487.1| carbamoyl phosphate synthase large subunit [Lactobacillus reuteri
           MM2-3]
 gi|325683594|ref|ZP_08163110.1| carbamoyl-phosphate synthase [Lactobacillus reuteri MM4-1A]
 gi|167006441|sp|A5VHN6|CARB_LACRD RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|226700932|sp|B2G564|CARB_LACRJ RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|148530361|gb|ABQ82360.1| carbamoyl-phosphate synthase large subunit [Lactobacillus reuteri
           DSM 20016]
 gi|183224079|dbj|BAG24596.1| carbamoylphosphate synthase large subunit [Lactobacillus reuteri
           JCM 1112]
 gi|227070581|gb|EEI08912.1| carbamoyl phosphate synthase large subunit [Lactobacillus reuteri
           MM2-3]
 gi|324977944|gb|EGC14895.1| carbamoyl-phosphate synthase [Lactobacillus reuteri MM4-1A]
          Length = 1056

 Score = 76.3 bits (187), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 50/286 (17%), Positives = 104/286 (36%), Gaps = 33/286 (11%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQIDVD---------------------RSVGLV 45
           G ++E + S   G     AL + G++   ++ +                      S+  +
Sbjct: 21  GQAAEFDYS---GTQACLALREEGYETILVNSNPATIMTDKEIADHVYIEPLTVESLSRI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +    PD     L G  G +  V      +L+ L I    + + +   + D+ + K++++
Sbjct: 78  IRQEYPDAILPTLGGQIGLNLAVSLSETGLLDELGIELLGTKLDSIDEAEDREKFKELMN 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G PV  S  VN     ++  H    P +++P       G  +   D  +         
Sbjct: 138 ELGEPVPASQTVNTVDEAVEFAHQCGYPVIVRPAFTMGGTGGGICHNDAEMRTVAKNGLE 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   Q LIE+ + G  E+   VM DA+ +V  +   ++  +     ++  +        
Sbjct: 198 LSPVTQCLIEKSIAGYKEIEFEVMRDAADNVMVVCCMEN--FDPVGIHTGDSIVFAPNQT 255

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +    Y+ ++  A    +A+   G        DP S +   +E+N 
Sbjct: 256 LSDREYQMLRDCALKLIRALKIEGGCNVQLALDPQSFQYNVIEVNP 301



 Score = 65.9 bits (160), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 32/221 (14%), Positives = 79/221 (35%), Gaps = 13/221 (5%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQHLISPPYVIKPL 133
            +    + +     + D+    QV++   +     +     +  + +   I  P +++P 
Sbjct: 650 GVNILGTTVDDLDAAEDREVFDQVITDLNLKQPIGLTATTHSAVIKAAEKIGYPVLVRPS 709

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
                  +  +   + +   L Q++S      +LI+ Y++G E     + D    +    
Sbjct: 710 YVLGGKAMETVYNQEELQQYLQQNASITADHPILIDAYLEGRECEVDAICDGKDVLIPGI 769

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
           +   +           +S  V P +    DI +++         A+ C GI    F+   
Sbjct: 770 MEHIEHAGVHS----GDSMAVYPPQHFNDDIKRQIVTATEKLAVALKCIGIMNIQFIVH- 824

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            + +V+ LE+N +   T     P ++   G    ++   ++
Sbjct: 825 -NHEVYILEVNPRASRT----VPFLSKITGIEMAQVATRVI 860


>gi|313140790|ref|ZP_07802983.1| JadJ [Bifidobacterium bifidum NCIMB 41171]
 gi|313133300|gb|EFR50917.1| JadJ [Bifidobacterium bifidum NCIMB 41171]
          Length = 639

 Score = 76.3 bits (187), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 45/220 (20%), Positives = 84/220 (38%), Gaps = 17/220 (7%)

Query: 56  NVLHGNFGEDGLVQAI---LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
           N +H  +G    V +    +E     +      A     DK+ +++V  S  VP  P I 
Sbjct: 82  NAVHPGYGFLSEVPSFADKVEKAGAIWVGPHPQALIDLGDKITARRVAKSAQVPPVPGIS 141

Query: 113 VN----RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG--DQL 166
                 R  +D  H    P ++K   GG   GI V+  D  +    +   +   G  D+ 
Sbjct: 142 EPVRELRTLLDFSHTYGYPVMMKRTDGGGGRGITVVHDDDEMRRFYMNHDAMQGGDLDEY 201

Query: 167 LIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIY 224
            IE+++D    +      D   D T  +          ++  +       PA  +P ++ 
Sbjct: 202 FIEKFIDKARHVETQCGRDRFGDFTVYST-----RDCSVQRRNQKLVEEAPAPFLPDEVI 256

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +++  +      +   G+   +F+  P  RKV++LE+N 
Sbjct: 257 NQLETYSRSLFNKVDYIGLGTCEFMVTPH-RKVYFLEVNP 295


>gi|293364847|ref|ZP_06611564.1| acetyl-CoA carboxylase subunit A [Streptococcus oralis ATCC 35037]
 gi|306825796|ref|ZP_07459135.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus sp. oral
           taxon 071 str. 73H25AP]
 gi|307703096|ref|ZP_07640043.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus oralis
           ATCC 35037]
 gi|315612598|ref|ZP_07887511.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus sanguinis
           ATCC 49296]
 gi|291316297|gb|EFE56733.1| acetyl-CoA carboxylase subunit A [Streptococcus oralis ATCC 35037]
 gi|304432157|gb|EFM35134.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus sp. oral
           taxon 071 str. 73H25AP]
 gi|307623489|gb|EFO02479.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus oralis
           ATCC 35037]
 gi|315315579|gb|EFU63618.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus sanguinis
           ATCC 49296]
          Length = 455

 Score = 76.3 bits (187), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 75/220 (34%), Gaps = 16/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  FG   E+     + + + I +            DK+ +++ +   GVPV P    
Sbjct: 77  AIHPGFGFLSENSKFATMCDEVGIKFIGPSGAVMDTMGDKINAREQMIKAGVPVIPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
            +      +     I  P ++K   GG   GI  ++K + +      +SS          
Sbjct: 137 EVHTAEEALAVAEKIGYPVMLKASAGGGGKGIRKVEKAEDLVAAFETASSEAKANFGNGA 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+ +     +   ++ D    V  +            K             I   + 
Sbjct: 197 MYLERVIYPARHIEVQILADQEGHVVHLGERDCSLQRNNQKVL----EESPSIAIGKTLR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            E+   A  A +++G       +FL D  S   +++E+N 
Sbjct: 253 HEIGAAAVRAAESVGYENAGTIEFLLDEASGNFYFMEMNT 292


>gi|281421177|ref|ZP_06252176.1| phosphoribosylglycinamide formyltransferase 2 [Prevotella copri DSM
           18205]
 gi|281404712|gb|EFB35392.1| phosphoribosylglycinamide formyltransferase 2 [Prevotella copri DSM
           18205]
          Length = 393

 Score = 75.9 bits (186), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 46/253 (18%), Positives = 88/253 (34%), Gaps = 37/253 (14%)

Query: 33  VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
            S +D D ++  V+    PD+    +     E         L +       ++ SA +++
Sbjct: 48  FSMLDGD-ALTAVVEKHHPDIIVPEIEAIRTE--------RLFDFEKEGIQVVPSARAVN 98

Query: 93  -----KMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVIK 145
                +          G+          F    ++   I  P V+KPL   S  G   + 
Sbjct: 99  YTMNRRAIRDLAAKELGLRTAKYFYAKTFEEFKNAADEIGFPCVVKPLMSSSGHGQSYVH 158

Query: 146 KDQSIPLDLLQSSSWNHGD--QLLIEQYVDGIE----LTCGVMGDASLDVTEIA-VPKSD 198
            D  +     ++     GD  +++IE+++D       LT       +L    I  V K  
Sbjct: 159 NDDELKEAYKEAMEEGRGDVKEVIIEEFIDFDSEFTLLTVTQKDGPTLFCPPIGHVQKGG 218

Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
            Y               P +IP +  K+ + +A    +A+   G+   +F       +V 
Sbjct: 219 DY----------RESWQPFQIPEEALKKAEHIAGEVTKALTGAGLWGVEFFLSKQ-GEVI 267

Query: 259 WLEINVQP---GM 268
           + E++ +P   GM
Sbjct: 268 FSELSPRPHDTGM 280


>gi|198276641|ref|ZP_03209172.1| hypothetical protein BACPLE_02837 [Bacteroides plebeius DSM 17135]
 gi|198270166|gb|EDY94436.1| hypothetical protein BACPLE_02837 [Bacteroides plebeius DSM 17135]
          Length = 389

 Score = 75.9 bits (186), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 46/247 (18%), Positives = 88/247 (35%), Gaps = 36/247 (14%)

Query: 39  DRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD-----K 93
             ++  V+   +PD+    +     E         L  +      ++ SA +++     K
Sbjct: 54  GEALDRVVEKYRPDIIVPEIEAIRTE--------RLYHLEKEGIQVVPSARAVNFTMNRK 105

Query: 94  MRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
                     G+        + +    ++   I  P VIKPL   S  G  V K ++ + 
Sbjct: 106 AIRDLAAKELGLKTAKYFYASSYEELKEAAGKIGYPCVIKPLMSSSGKGQSVAKSEEDLK 165

Query: 152 LDLLQSSSWNHGD--QLLIEQYV----DGIELTCGVMGDASLDVTEIA-VPKSDFYSYEL 204
                  S + GD  +L++E+++    +   LT       +L    I  V K   Y    
Sbjct: 166 YSWEYGCSGSRGDIKELIVEEFIHFDSEITLLTVTQKDGPTLFCPPIGHVQKGGDY---- 221

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
                      PA I  +   E Q++A    +A+   G+   +F     +  V++ E++ 
Sbjct: 222 ------RESFQPAHIAPEHLAEAQQMAEKVTRALTGYGLWGVEFFLSHENG-VYFSELSP 274

Query: 265 QP---GM 268
           +P   GM
Sbjct: 275 RPHDTGM 281


>gi|58617274|ref|YP_196473.1| propionyl-CoA carboxylase alpha chain [Ehrlichia ruminantium str.
           Gardel]
 gi|58416886|emb|CAI27999.1| Propionyl-CoA carboxylase alpha chain [Ehrlichia ruminantium str.
           Gardel]
          Length = 660

 Score = 75.9 bits (186), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 36/225 (16%), Positives = 82/225 (36%), Gaps = 17/225 (7%)

Query: 52  DLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
           DL    +H  +G   E+      L    I +      +  +  DK+ SK++  S  V + 
Sbjct: 76  DLGVQAVHPGYGFLSENANFPEKLNDYGIEFIGPSADSIRMMADKITSKKIAESAQVNII 135

Query: 109 PSI--LVNRFTMDS--QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSW 160
           P    +V+           I  P +IK   GG   G+ ++K    I         ++S  
Sbjct: 136 PGYMGIVDSSEQAEKIAESIGFPVMIKATAGGGGKGMRIVKSRDEINQAFTSATNEASKN 195

Query: 161 NHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI 219
               ++ IE+Y++    +   ++ D   ++  +   +     +  K             +
Sbjct: 196 FRDGRIFIEKYIELPRHIEIQILADKHGNIVCLGERECSIQRHNQK----VIEETPSPFL 251

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
                +++ +      + +G       +F+ D  +++ ++LE+N 
Sbjct: 252 DERTRRKMYKQCISLARKVGYYSAGTIEFVVD-QNKQFYFLEMNT 295


>gi|300703019|ref|YP_003744621.1| biotin carboxylase [Ralstonia solanacearum CFBP2957]
 gi|299070682|emb|CBJ41977.1| Biotin carboxylase (Acetyl-CoA carboxylase subunit A) [Ralstonia
           solanacearum CFBP2957]
          Length = 456

 Score = 75.9 bits (186), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 81/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         L  DK+ +KQ +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAERVEQSGFTFIGPTPDCIRLMGDKVSAKQAMIKSGVPCVPGSDG 136

Query: 112 ---LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
                 +  + +   +  P +IK   GG   G+ V+  + ++   +     ++       
Sbjct: 137 ALPDDPKEILATARKVGYPVIIKAAGGGGGRGMRVVHTEAALINAVNMTREEAGRAFGNP 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
           ++ +E++++    +   V+ D   +   +            K          PA  IP  
Sbjct: 197 EVYMEKFLENPRHVEIQVLADQHRNAIWLGERDCSMQRRHQK-----VIEEAPAPGIPRR 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + + +      A + IG RG    +FLF   + + +++E+N 
Sbjct: 252 LIERIGDRCADACKKIGYRGAGTFEFLF--ENGEFYFIEMNT 291


>gi|332673885|gb|AEE70702.1| acetyl-CoA carboxylase subunit A [Helicobacter pylori 83]
          Length = 455

 Score = 75.9 bits (186), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 38/225 (16%), Positives = 77/225 (34%), Gaps = 14/225 (6%)

Query: 49  LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
            + D  F   +G   E+     I     + +        AL  DK ++K V+   G+PV 
Sbjct: 84  FEADAIFPG-YGFLSENQNFVEICSHHSLEFIGPSAKVMALMSDKSKAKSVMKEAGMPVI 142

Query: 109 PS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSW 160
                 +   +   +    I  P +IK   GG   G+ V+     +         ++ S 
Sbjct: 143 EGSDGLLKSYQEAEEIADKIGYPVIIKAAAGGGGRGMRVVGDKSKLKNLYLAAETEALSA 202

Query: 161 NHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI 219
                + +E+++     +   ++ D   +V  +          + K             +
Sbjct: 203 FGDGSVYLEKFINKPKHIEVQILADKHGNVIHVGERDCSVQRRQQKLI----EETPAVVL 258

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              + K +   A  A + IG  G    +FL D   +  +++E+N 
Sbjct: 259 EEGVRKRLLETAIKAAKYIGYVGAGTFEFLLDSNMKDFYFMEMNT 303


>gi|256809979|ref|YP_003127348.1| Carbamoyl-phosphate synthase L chain ATP-binding
           [Methanocaldococcus fervens AG86]
 gi|256793179|gb|ACV23848.1| Carbamoyl-phosphate synthase L chain ATP-binding
           [Methanocaldococcus fervens AG86]
          Length = 481

 Score = 75.9 bits (186), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 47/277 (16%), Positives = 94/277 (33%), Gaps = 34/277 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLA------------FN 56
           SG     AL++ G     +         D D +  + L  L PD+               
Sbjct: 26  SGSQACKALKEEGIYTILVNSNPATIQTDTDMADKVYLEPLHPDIVEKIIEKERPDAILP 85

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G  G +  +    + +L+   I    S I    ++ D+    + ++    PV     
Sbjct: 86  TMGGQTGLNLALELHRRGVLDKYGIKLLGSNIKTIEIAEDRELFAKAMAEINEPVTKCKA 145

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           VN     ++    I  P +++P       G  +    + +     +   ++   Q+LI++
Sbjct: 146 VNSVDEAVEFAEEIGYPVIVRPAFTLGGTGGGIAHNKEELIDIASKGLKYSIIHQVLIDE 205

Query: 171 YVDG-IELTCGVMGD-ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            V G  E    VM D     +    +   D            S  V P + +P + Y+++
Sbjct: 206 SVLGWKEFELEVMRDRKDTCIIVCGMENIDPMGIHT----GESIVVSPIQTLPDEFYQKL 261

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +  A    + +G  G     F  +    +   +E+N 
Sbjct: 262 RNAAIKIIRHLGIEGGCNIQFAVNKEMTEYRVIEVNP 298


>gi|90408131|ref|ZP_01216300.1| acetyl-CoA carboxylase multifunctional enzyme accADC,
            carboxyltransferase subunit alpha/carboxyl transferase
            subunit [Psychromonas sp. CNPT3]
 gi|90310743|gb|EAS38859.1| acetyl-CoA carboxylase multifunctional enzyme accADC,
            carboxyltransferase subunit alpha/carboxyl transferase
            subunit [Psychromonas sp. CNPT3]
          Length = 1520

 Score = 75.9 bits (186), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 80/220 (36%), Gaps = 16/220 (7%)

Query: 57   VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
             LH   G   E      +     I +    + +     +K  + +     GVPV P    
Sbjct: 1024 ALHPGIGFLSESPQFADLCVGHGINFIGPSMDSMLTMGNKSNAIKTAQDHGVPVVPGSHG 1083

Query: 111  -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
             +      +D  + I  P ++K + GG   GI+VI+K + +     Q S+          
Sbjct: 1084 ILTGAEQALDIANGIGYPVLLKAVNGGGGKGILVIEKAEDMFTGFAQVSAEARSAFGNGD 1143

Query: 166  LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
            L +E+Y+     +   ++ D   +   + +          K    +++ +    +P  + 
Sbjct: 1144 LYLEKYITSLRHIEVQLLRDKQGNTRVLGIRDCSVQRNNQKVVEESASTM----LPKKLE 1199

Query: 225  KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +          +A+   G    +F++D     ++++E+N 
Sbjct: 1200 ELAMTYTESLAEAVDYMGAGTVEFIYDLDEDAIYFMEMNT 1239


>gi|27464135|gb|AAO15987.1|AF514870_3 CarB [Lactobacillus plantarum]
          Length = 1020

 Score = 75.9 bits (186), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 34/225 (15%), Positives = 79/225 (35%), Gaps = 14/225 (6%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--FTMDSQHLISPPYV 129
           L  L +    + + A+ L+ D+      +    +       V        + H I  P +
Sbjct: 644 LTKLGVTVLGTSVSATDLTEDRQSFADCLRLLKIAQATGTTVTELSGARQAAHAIGYPLL 703

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           ++P        + ++  D  +   +  + +  HG   L++QY+ G E    V+ D +   
Sbjct: 704 VRPSFVFGGRAMAIVHNDHELTPVIKSAVAAGHGAPTLMDQYLAGTECEVDVLSDGTSCF 763

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               +   +           +S  V P + +   +  ++  +A    Q + C G+    F
Sbjct: 764 IPGIMEHIEGAGVHS----GDSITVYPPQHLSPAVQDKIVTIATKLAQHLHCVGMMNIQF 819

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +       V+ +++N +   T     P M+        +L   ++
Sbjct: 820 VVTDD---VYVIDVNPRASRT----VPYMSKVTHLPLAQLATRLI 857



 Score = 75.2 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 45/231 (19%), Positives = 88/231 (38%), Gaps = 9/231 (3%)

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRS 96
           SV  +L    PD     L G  G +  +      +L  L+I    + +     + D+   
Sbjct: 73  SVTKILRATHPDALLPTLGGQTGLNLAMALDQAGVLNELKIQLLGTSLATINQAEDRAAF 132

Query: 97  KQVVSSCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154
           K ++     P+  S  V+  T  +     I  P +++P       G  +      +   L
Sbjct: 133 KALMKRLHQPIPASTTVHHVTSALSFAEKIGYPVIVRPAFTLGGSGGGIANNADELTQTL 192

Query: 155 LQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTH 213
            +  + +   + LIEQ + G  E+   VM D     T+I V   + +     ++  +  +
Sbjct: 193 QRGLTMSPVTECLIEQSIAGFKEIEFEVMRDNQG--TKIIVCSMENFDPVGIHTGDSIVY 250

Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
                +    Y++++  A    +A+  RG        DP SR+ + +E+N 
Sbjct: 251 APVQTLTDTEYQQLRTAALTIVEALDIRGGCNVQLAQDPNSRQYYVIEVNP 301


>gi|83746796|ref|ZP_00943844.1| Biotin carboxylase [Ralstonia solanacearum UW551]
 gi|207721542|ref|YP_002251981.1| biotin carboxylase protein [Ralstonia solanacearum MolK2]
 gi|207744344|ref|YP_002260736.1| biotin carboxylase protein [Ralstonia solanacearum IPO1609]
 gi|83726565|gb|EAP73695.1| Biotin carboxylase [Ralstonia solanacearum UW551]
 gi|206586703|emb|CAQ17288.1| biotin carboxylase protein [Ralstonia solanacearum MolK2]
 gi|206595749|emb|CAQ62676.1| biotin carboxylase protein [Ralstonia solanacearum IPO1609]
          Length = 456

 Score = 75.9 bits (186), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 81/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         L  DK+ +KQ +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAERVEQSGFTFIGPTPDCIRLMGDKVSAKQAMIKSGVPCVPGSDG 136

Query: 112 ---LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
                 +  + +   +  P +IK   GG   G+ V+  + ++   +     ++       
Sbjct: 137 ALPDDPKEILATARKVGYPVIIKAAGGGGGRGMRVVHTEAALLNAVNMTREEAGRAFGNP 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
           ++ +E++++    +   V+ D   +   +            K          PA  IP  
Sbjct: 197 EVYMEKFLENPRHVEIQVLADQHRNAIWLGERDCSMQRRHQK-----VIEEAPAPGIPRR 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + + +      A + IG RG    +FLF   + + +++E+N 
Sbjct: 252 LIERIGDRCADACKKIGYRGAGTFEFLF--ENGEFYFIEMNT 291


>gi|313675113|ref|YP_004053109.1| pyruvate carboxylase [Marivirga tractuosa DSM 4126]
 gi|312941811|gb|ADR21001.1| pyruvate carboxylase [Marivirga tractuosa DSM 4126]
          Length = 1149

 Score = 75.9 bits (186), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 37/244 (15%), Positives = 84/244 (34%), Gaps = 26/244 (10%)

Query: 35  QIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSM 91
            +D+   +  +  H   D     +H  +G   E+  +        I +            
Sbjct: 67  YLDI-EEIIKLAKHKGVD----AIHPGYGFLSENVKLARRCREEGIIFVGPEPEVMNALG 121

Query: 92  DKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147
           DK+R+K +     VP+       ++     +     I  P ++K   GG   G+ V++  
Sbjct: 122 DKVRAKDIAIKANVPIIEDSKIDLVDTETALQEAERIGYPIMVKAAAGGGGRGMRVVQNK 181

Query: 148 QSIPLDLLQSS-----SWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYS 201
             +      S      ++   D + +E+Y+D    +   +MGD   ++            
Sbjct: 182 DQLKTAFADSKSEAGNAFG-DDTIFLEKYIDHPKHIEVQIMGDNYGNIV-----HLFERD 235

Query: 202 YELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260
             ++        V P A +  +   ++   A    + +    +   +FL D     ++++
Sbjct: 236 CSVQRRFQKVVEVAPSANLSQETRDKLYEYALAITREVNYNNVGTVEFLVDKEEN-IYFI 294

Query: 261 EINV 264
           E+N 
Sbjct: 295 EVNP 298


>gi|295695966|ref|YP_003589204.1| carbamoyl-phosphate synthase, large subunit [Bacillus tusciae DSM
           2912]
 gi|295411568|gb|ADG06060.1| carbamoyl-phosphate synthase, large subunit [Bacillus tusciae DSM
           2912]
          Length = 1107

 Score = 75.9 bits (186), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 56/287 (19%), Positives = 110/287 (38%), Gaps = 35/287 (12%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI---------DVD------------RSVGLV 45
           G ++E + +   G     AL++ G++V  +         D               +V  V
Sbjct: 21  GQAAEFDYA---GTQACRALKEEGYEVVLVNSNPATIMTDPHMADRVYIEPLTPETVEAV 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
               +PD     L G  G +  V    + +LE L I    + + A   + D+ + +++++
Sbjct: 78  ARRERPDGLLATLGGQTGLNLAVELARRGVLEELCIELLGTPLHAIERAEDREQFRKLMA 137

Query: 102 SCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G PV  S +V      +     I  P +++P       G  +    + +         
Sbjct: 138 EIGEPVPESAIVTEVEEALQFADRIGYPVIVRPAYTLGGTGGGLAAGPEELAEVAALGLE 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   Q+L+E+ V G  E+   VM D     T I V   +     +   + +S  V P++
Sbjct: 198 ASPIRQILVERSVAGFKEIEYEVMRDGRD--TCIVVCNMENVD-PVGIHTGDSIVVAPSQ 254

Query: 219 -IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +    Y+ ++  +    +A+G  G     F  DP S + + +E+N 
Sbjct: 255 TLSDQDYQLLRSASLRIIRALGIEGGCNVQFALDPASDRYYVIEVNP 301



 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 36/273 (13%), Positives = 98/273 (35%), Gaps = 37/273 (13%)

Query: 18  SGKACASALEDAGFKVSQID-------VDRSVGLVLAHLKPDLAFNVLHGNFGEDGL--- 67
           S  A   AL+ AG++   ++        D +    L + +P    +V+H    E+ +   
Sbjct: 573 SVHAV-WALQKAGYEAVIVNNNPETVSTDFNTADRL-YFEPLHVEDVMHVIRRENPVGVL 630

Query: 68  ----------VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117
                     + A L    +    + +     + D+ +  ++++  G+            
Sbjct: 631 VQFGGQTAINLAAALAERGVRILGTDLEQIDRAEDREKFDELLADLGLSRPRGRTAWSLE 690

Query: 118 MD--SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175
               +   +  P +++P        + ++ + + +   L ++        + I++Y+ G 
Sbjct: 691 EARRAAQDLGYPLLVRPSYVLGGRAMQIVDQPEELEGYLREAFEAGPDRPVWIDRYIQGT 750

Query: 176 ELTCGVMGDAS---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLA 231
           E+    + D     +      + ++  +S        +S  V PAK +   +   +    
Sbjct: 751 EVEVDAVCDGEDVLIPGIMEHIERAGVHS-------GDSIAVYPAKSLSPVMKARIVDAT 803

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
               +A+  +G+    F+    + +++ LE+N 
Sbjct: 804 ERIARALEVKGLINIQFVIR--NDELYVLEVNP 834


>gi|240140544|ref|YP_002965024.1| ATP-dependent urea carboxylase [Methylobacterium extorquens AM1]
 gi|240010521|gb|ACS41747.1| ATP-dependent urea carboxylase [Methylobacterium extorquens AM1]
          Length = 1175

 Score = 75.9 bits (186), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 40/256 (15%), Positives = 84/256 (32%), Gaps = 30/256 (11%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      L    I +             K  ++ +  + GVP+ P   +
Sbjct: 77  AVHPGYGFLSENVGFAERLAAEGIRFIGPRPEHLRAFGLKHTARDLAKASGVPLLPGTDL 136

Query: 114 N---RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQL 166
                  + +   I  P ++K   GG  +G+ +    Q +                  ++
Sbjct: 137 LPDVETALRAAEAIGYPVMLKSTAGGGGIGMQLCHSGQELAERFAAVERTARASFGDARV 196

Query: 167 LIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIY 224
            +E++V     +   + GD    V  +           L+  +       PA  +   + 
Sbjct: 197 YLERFVAQARHVEVQIFGDGRGRVVALGE-----RDCSLQRRNQKVIEETPAPGLSDAVR 251

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI---FPEMAAYA 281
             +   A    +++        +F++DP      +LE+N +       +    P   A  
Sbjct: 252 ARLHAAAVALGESVAYASAGTVEFIYDPDREDFSFLEVNTR-------LQVEHPVTEAVF 304

Query: 282 GYSFRELLLWMVEDAS 297
           G    +L+ WMV  A+
Sbjct: 305 GI---DLVEWMVRQAA 317


>gi|91775864|ref|YP_545620.1| acetyl-CoA carboxylase [Methylobacillus flagellatus KT]
 gi|91709851|gb|ABE49779.1| acetyl-CoA carboxylase, biotin carboxylase [Methylobacillus
           flagellatus KT]
          Length = 472

 Score = 75.9 bits (186), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 43/250 (17%), Positives = 90/250 (36%), Gaps = 23/250 (9%)

Query: 32  KVSQIDVDRSVGLVLAHLKPDLAF----NVLHGNFG---EDGLVQAILELLEIPYTHSGI 84
           +   I  D  +G + AH   +LA     + LH  +G   E+  +  I     I +     
Sbjct: 47  EAYNIGSDPVLGYLNAHNIVNLAVASGCDALHPGYGFLSENPELAEICARRGIKFIGPDA 106

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI----SPPYVIKPLKGGSSLG 140
                  DK++++  +   G+P  P    N   ++    +      P ++K   GG   G
Sbjct: 107 KVIRQMGDKIQARTAMIKAGIPCVPGSEGNLENLEEARKLAAKIGYPVMLKATNGGGGRG 166

Query: 141 IIVIKKDQSIPLDL-----LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195
           I     ++ +  +        S ++   +  L +  V+   +   V+ D+  +V  +   
Sbjct: 167 IRRCNDEKELLSNYDRVISEASKAFGKPEVFLEKCVVNPRHIEVQVLADSHGNVIHLFER 226

Query: 196 KSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
                    K        + P  ++     + +  LA  A +A+G +     +FL D   
Sbjct: 227 DCSIQRRNQKL-----IEIAPSPQLSKAQREYIGNLAVKAAKAVGYKNAGTVEFLLD-SD 280

Query: 255 RKVFWLEINV 264
              +++E+N 
Sbjct: 281 NNFYFMEMNT 290


>gi|108802892|ref|YP_642829.1| acetyl-coenzyme A carboxylase carboxyl transferase subunit
           alpha/biotin carboxylase [Rubrobacter xylanophilus DSM
           9941]
 gi|108764135|gb|ABG03017.1| acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha /
           biotin carboxylase [Rubrobacter xylanophilus DSM 9941]
          Length = 463

 Score = 75.9 bits (186), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 81/220 (36%), Gaps = 18/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     I E + + +        A   DK  +++     GVP+ P    
Sbjct: 77  AVHPGYGFLAENARFAEICERVGLTFIGPPSGVIARMGDKAAARRAAEEAGVPIAPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
                         +  P VIK   GG   G+ V++ ++ +         ++ +      
Sbjct: 137 PCSGAGEVRRVGAEVGYPLVIKASAGGGGKGMRVVRSEEEVEAAFADAGREAGASFGDGS 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           L +E+Y+D    +   V+ D   +V           S + +Y  L         +P ++ 
Sbjct: 197 LYVERYLDPLRHVEVQVLADTHGNVVAFPERD---CSVQRRYQKL-VEESPAPGLPPEVR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +++   A     ++G  G    +F++     + +++E+N 
Sbjct: 253 EDLLSAARDLAASLGYVGAGTVEFIYSE--GEFYFIEMNT 290


>gi|294497094|ref|YP_003560794.1| phosphoribosylaminoimidazole carboxylase, ATPase subunit [Bacillus
           megaterium QM B1551]
 gi|294347031|gb|ADE67360.1| phosphoribosylaminoimidazole carboxylase, ATPase subunit [Bacillus
           megaterium QM B1551]
          Length = 381

 Score = 75.9 bits (186), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 30/192 (15%), Positives = 77/192 (40%), Gaps = 15/192 (7%)

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGG 136
           Y   G    A++ ++   K++++   + V    +V      + +   I  P V+K  +GG
Sbjct: 94  YVPQGSHLLAVTQNRRLEKEMITKLNLDVPDYAIVTTEEELLKAVETIGYPCVVKTCRGG 153

Query: 137 -SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAV 194
               G +++K + +I       +      + ++EQ+++   E++  V  +A  +   + V
Sbjct: 154 YDGKGQVLVKNENNIREAAELLAQ----SECIVEQWMNLDKEVSVIVHRNAKGETVCLPV 209

Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
            ++    + L         ++PA+I  D   +  + A    + +   G    +       
Sbjct: 210 AENIHKHHIL------HQTIVPARITADQEAKALQYAQEIAKGLDLVGTLAVEMFLTK-E 262

Query: 255 RKVFWLEINVQP 266
            +++  E+  +P
Sbjct: 263 GQLYINEMAPRP 274


>gi|313889229|ref|ZP_07822883.1| putative acetyl-CoA carboxylase, biotin carboxylase subunit
           [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312844783|gb|EFR32190.1| putative acetyl-CoA carboxylase, biotin carboxylase subunit
           [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 459

 Score = 75.9 bits (186), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 32/202 (15%), Positives = 76/202 (37%), Gaps = 21/202 (10%)

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ----HLISPPYVI 130
             + +         L  DK+ +K ++    VPV  +  ++  + D        I  P ++
Sbjct: 98  AGLIFIGPSPKLIKLMGDKIGAKNLMEDIKVPVAKAHSLDGESEDEILEICDKIGYPIIL 157

Query: 131 KPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDA 185
           K   GG   G+  +   +++     L   ++ +    +++ IE++++    +   V+ D 
Sbjct: 158 KARSGGGGKGMRRVDSPENLFHYIDLSKAEAKASFGDERIFIEKFIENPRHIEVQVLSDG 217

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK---IPLDIYKEVQRLAFLAHQAIGCRG 242
           +  +          Y  E      N   +  A    I  ++ +++ + +    +A G  G
Sbjct: 218 NKSL--------HLYERECSLQRNNQKILEEAPCNFISYELKEKLYKASLDCVRATGYLG 269

Query: 243 ISRSDFLFDPLSRKVFWLEINV 264
               +FL D      ++ E+N 
Sbjct: 270 AGTVEFLVDKDEN-FYFCEMNT 290


>gi|225849501|ref|YP_002729666.1| carbamoyl-phosphate synthase large chain, N- section
           (carbamoyl-phosphate synthetase ammonia chain)
           [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225644401|gb|ACN99451.1| carbamoyl-phosphate synthase large chain, N- section
           (Carbamoyl-phosphate synthetase ammonia chain)
           [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 559

 Score = 75.9 bits (186), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 47/289 (16%), Positives = 104/289 (35%), Gaps = 38/289 (13%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQID---------------------VDRSVGLV 45
           G ++E + S   G   A AL++ G++V  ++                     +   +  +
Sbjct: 21  GQAAEFDYS---GTQGAKALKEEGYRVILVNSNPATIMTDPNIADRTYIEPLITPVLEKI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   +PD     L G    +  ++     IL+   +    +       + D+   K+ + 
Sbjct: 78  IEKERPDAILPTLGGQTALNLAIELYEKGILDKYNVELIGAKYEVIKKAEDRDLFKKAME 137

Query: 102 SCGVPVCPSILVNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
           + G+ +  S +V       +    I  P +I+P       G  +    +     +     
Sbjct: 138 NIGLSMPKSAVVKSIAEAEEVIDWIGFPVIIRPSFTLGGTGGSIAYNREEFYPKVKAGLD 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
            +   ++L+E+ V G  E    VM D + + V   ++   D           +S  + PA
Sbjct: 198 ASPIHEVLLEESVIGWKEFEMEVMRDKNDNCVIICSIENLDPMGVHT----GDSITIAPA 253

Query: 218 K-IPLDIYKEVQRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
             +    Y+ ++  +    + IG   G S   F  +P + + + +E+N 
Sbjct: 254 MTLSDREYQILRNYSIAVMREIGVETGGSNVQFSQNPKTGEFYVIEMNP 302


>gi|218887394|ref|YP_002436715.1| carbamoyl-phosphate synthase, large subunit [Desulfovibrio vulgaris
           str. 'Miyazaki F']
 gi|218758348|gb|ACL09247.1| carbamoyl-phosphate synthase, large subunit [Desulfovibrio vulgaris
           str. 'Miyazaki F']
          Length = 1078

 Score = 75.9 bits (186), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 46/278 (16%), Positives = 99/278 (35%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G++V  +         D               +V  ++   +PD    
Sbjct: 29  SGTQAVKALKEEGYEVVLVNSNPATIMTDPGLADRTYIEPIEPETVAAIIRKERPDALLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G  G +  +      +LE   +    +       +  +   ++ +++ G+ V  S +
Sbjct: 89  TLGGQTGLNTALALAAMGVLEECGVDLIGANKQVIEKAESRELFREAMANIGLKVPASGI 148

Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                   +    +  P +I+P       G  +    + +     +  + +   +++IEQ
Sbjct: 149 ARTMEDVRRLGTEMPFPLIIRPAFTMGGTGGGIAYNMEDLEEIAARGLAASIKHEVMIEQ 208

Query: 171 YVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            V G  E    VM D + + V   ++   D           +S  V PA+ +    Y+ +
Sbjct: 209 SVLGWKEFEMEVMRDKADNCVIICSIENFDPMGVHT----GDSITVAPAQTLTDVEYQMM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P +  +  +E+N 
Sbjct: 265 RDASIAIMREIGVETGGSNVQFGINPQNGDMVVIEMNP 302



 Score = 62.8 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 46/264 (17%), Positives = 94/264 (35%), Gaps = 31/264 (11%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLV-----QA 70
           AL++ G +   +         D D S  L    L  +   N++      DG+V     Q 
Sbjct: 592 ALKEMGVQAIMVNSNPETVSTDYDTSDRLYFEPLTFEDVMNIIE-TEKPDGVVVQFGGQT 650

Query: 71  ILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--FTMDSQH 122
            L L        +P   +   +   + D+ R + ++   G+    +  V        +  
Sbjct: 651 PLNLAVPLMRAGVPILGTSPDSIDRAEDRERFQALLQKLGLRQPANATVMSLPEARSAAA 710

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGV 181
            I  P V++P        + ++  ++ +      S        +LI+++++  IE+    
Sbjct: 711 RIGYPTVVRPSYVLGGRAMEIVYDEEQLAEYFANSVGEKPKHPILIDKFLESAIEVDVDA 770

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGC 240
           + D     T++ V     +  E    S +S  V+P   +P  I  E+ R      + +  
Sbjct: 771 LSDG----TDVYVAGIMEHIEEAGIHSGDSACVIPPHTLPEAIVNEIARQTVELARELRV 826

Query: 241 RGISRSDFLFDPLSRKVFWLEINV 264
            G+    F        ++ LE+N 
Sbjct: 827 VGLMNIQFAV--KDGLIYILEVNP 848


>gi|118473087|ref|YP_886752.1| pyruvate carboxylase [Mycobacterium smegmatis str. MC2 155]
 gi|118174374|gb|ABK75270.1| pyruvate carboxylase [Mycobacterium smegmatis str. MC2 155]
          Length = 1127

 Score = 75.9 bits (186), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 38/246 (15%), Positives = 83/246 (33%), Gaps = 16/246 (6%)

Query: 28  DAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87
           + G  V        +  V  H   D  +   +G   E+  + A      I +        
Sbjct: 53  EVGHPVRAYLSVDEIIRVAKHSGADAVYPG-YGFLSENPDLAAKCAEAGITFVGPSAEVL 111

Query: 88  ALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD---SQHLISPPYVIKPLKGGSSLGIIVI 144
            L+ +K R+     + G+PV  S   +    +   +   +  P  +K + GG   G+  +
Sbjct: 112 QLTGNKARAIAAARAAGLPVLSSSEPSSSVDELMAAAADMEFPLFVKAVSGGGGRGMRRV 171

Query: 145 KKDQSIPLDLLQS-----SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDF 199
              +S+   +  +     S++      L +  ++   +   ++ D + +V          
Sbjct: 172 TDRESLAEAIEAASREAESAFGDASVYLEQAVLNPRHIEVQILADGAGNVM-----HLFE 226

Query: 200 YSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
               ++        + PA  +  ++ +++   A    + IG       +FL D     VF
Sbjct: 227 RDCSVQRRHQKVVELAPAPNLSDELRQQICADAVAFARQIGYSCAGTVEFLLDERGHHVF 286

Query: 259 WLEINV 264
             E N 
Sbjct: 287 I-ECNP 291


>gi|260437973|ref|ZP_05791789.1| carbamoyl-phosphate synthase, large subunit [Butyrivibrio crossotus
           DSM 2876]
 gi|292809599|gb|EFF68804.1| carbamoyl-phosphate synthase, large subunit [Butyrivibrio crossotus
           DSM 2876]
          Length = 1065

 Score = 75.9 bits (186), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 35/227 (15%), Positives = 91/227 (40%), Gaps = 14/227 (6%)

Query: 70  AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC--PSILVNRFTMDSQHLISPP 127
           A++E+  +P   +       + D+    +++   G+P     ++      +++ + +  P
Sbjct: 646 ALMEM-GVPILGTSAEDVDAAEDRELFDEILEQTGIPRAAGKTVFTTEEALEAANELGYP 704

Query: 128 YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL 187
            +++P       G+ +   D+ I   +   +       +L+++Y+ G E+    + D   
Sbjct: 705 VLVRPSYVLGGQGMQIAISDKDIVEFMEIINRQVQEHPILVDKYLMGKEIEVDAVCDGE- 763

Query: 188 DVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRS 246
              +I +P    +       S +S  V PA+ I   I   ++       +A+  +G+   
Sbjct: 764 ---DILIPGIMEHIERAGIHSGDSISVYPAQSISQKIVDMLEDYTIKLARALHVKGLINI 820

Query: 247 DFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            F+    + +V+ +E+N +   T     P ++   G    +L   ++
Sbjct: 821 QFIV--YNDQVYVIEVNPRSSRT----VPYISKVTGIPIVKLATQVI 861



 Score = 67.5 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 43/232 (18%), Positives = 85/232 (36%), Gaps = 9/232 (3%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMR 95
           +S+  ++   KPD     L G  G +  ++      LE   +    +       + D++ 
Sbjct: 72  KSLEQIILKEKPDSILPTLGGQAGLNLAMEIAETGFLEEHNVKLIGTTAETIRKAEDRLE 131

Query: 96  SKQVVSSCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153
            K  +   G P  PS++V      +   + I  P V++P       G  + K ++ +   
Sbjct: 132 FKTTMEKIGEPCAPSLVVENVEDGIAFANQIGYPVVLRPAYTLGGSGGGIAKNEEELIDI 191

Query: 154 LLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212
           L      +   Q+L+E+ + G  E+   VM DA+   T I V   +       ++  +  
Sbjct: 192 LSNGLRLSRVGQVLVERCIAGWKEIEYEVMRDANG--TCITVCNMENIDPVGVHTGDSIV 249

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
                 +    Y+ ++  A      +   G     F   P S +   +E+N 
Sbjct: 250 VAPSQTLSDKEYQMLRSSALNIIDELKITGGCNVQFALHPTSFEYCVIEVNP 301


>gi|239821004|ref|YP_002948189.1| acetyl-CoA carboxylase, biotin carboxylase [Variovorax paradoxus
           S110]
 gi|239805857|gb|ACS22923.1| acetyl-CoA carboxylase, biotin carboxylase [Variovorax paradoxus
           S110]
          Length = 450

 Score = 75.9 bits (186), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 80/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--I 111
            +H  +G   E     A +E   + +            DK+ +K+ +   GVP  P    
Sbjct: 77  AIHPGYGFLSESAGFAARVEQAGLVFVGPSAACIRTMGDKVSAKRAMRKAGVPCVPGPDE 136

Query: 112 LVNRFTMDSQHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGD 164
            +       Q +   I  P ++K   GG   G+ V++ + ++   +     ++       
Sbjct: 137 PLPDDPAAVQAIAREIGYPVIVKAAGGGGGRGMRVVQGEPALLDAMALTREEARQAFGNP 196

Query: 165 QLLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
           ++ IE++ +    +   V+ D+      +           L+          PA  I   
Sbjct: 197 EVYIEKFLLHPRHVEIQVLADSHGHAVWL-----GSRDCSLQRRHQKVIEEAPAPGIDEA 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +  EV      A + IG  G+   +FL++      +++E+N 
Sbjct: 252 LMAEVGERCAAACRQIGYCGVGTFEFLYEK--GAFYFIEMNT 291


>gi|170738734|ref|YP_001767389.1| carbamoyl-phosphate synthase L chain ATP-binding [Methylobacterium
           sp. 4-46]
 gi|168193008|gb|ACA14955.1| Carbamoyl-phosphate synthase L chain ATP-binding [Methylobacterium
           sp. 4-46]
          Length = 671

 Score = 75.9 bits (186), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 73/220 (33%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H  +G   E       L    I +      A A   DK+ SK+  S+  V   P  L 
Sbjct: 77  AVHPGYGFLSEREAFPKALAEAGIVFIGPNPGAIAAMGDKIESKKAASAAEVSTVPGFLG 136

Query: 113 ---VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
                   +     I  P +IK   GG   G+ +    + +     ++ S        D+
Sbjct: 137 VIEDPAHAVRIADEIGYPVMIKASAGGGGKGMRIAHSAEEVAEGFARARSEAASSFGDDR 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+++ D   +   V+GD   +V  +   +        K             +     
Sbjct: 197 VFVEKFITDPRHIEIQVIGDKHGNVIYLGERECSIQRRNQK----VIEEAPSPLLDEATR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +++   A    +A+        +F      +  ++LE+N 
Sbjct: 253 RKMGEQAVALAKAVNYDSAGTVEF-VAGQDKSFYFLEMNT 291


>gi|148654610|ref|YP_001274815.1| carbamoyl-phosphate synthase L chain, ATP-binding [Roseiflexus sp.
           RS-1]
 gi|148566720|gb|ABQ88865.1| 3-methylcrotonoyl-CoA carboxylase, alpha subunit [Roseiflexus sp.
           RS-1]
          Length = 659

 Score = 75.9 bits (186), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 36/219 (16%), Positives = 77/219 (35%), Gaps = 16/219 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H  +G   E            + +      A     DK+ ++++  + GVPV P    
Sbjct: 77  AIHPGYGFLSERAAFSRACRDAGLAFVGPPPEAIEALGDKIAARRLALATGVPVAPGYHG 136

Query: 113 ---VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
               +   +     I  P +IK   GG   G+ ++     +   L     ++ +    D 
Sbjct: 137 ADQSDETLLREATRIGYPLLIKASAGGGGRGMRIVTNADELMPALESARREARAAFGDDT 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+ +     +    + DA  +   +   +    S + +Y  +      PA +     
Sbjct: 197 VFLEKLIARPRHIEVQFLADAYGNAVHLFERE---CSIQRRYQKIVEESPSPA-LTPKQR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
           + +   A    +A G      ++FL+D       +LE+N
Sbjct: 253 EMIGEAAVRLARAAGYVNAGTAEFLYDETDGSFAFLEVN 291


>gi|163790401|ref|ZP_02184832.1| carbamoyl-phosphate synthase large subunit [Carnobacterium sp. AT7]
 gi|159874305|gb|EDP68378.1| carbamoyl-phosphate synthase large subunit [Carnobacterium sp. AT7]
          Length = 1059

 Score = 75.9 bits (186), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 48/296 (16%), Positives = 108/296 (36%), Gaps = 34/296 (11%)

Query: 25  ALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNVLHGNFG 63
           AL + G++V  ++        D+ +                +L   +PD     L G  G
Sbjct: 36  ALREEGYEVVLVNSNPATIMTDKEIADKVYIEPITLEFVSRILRKERPDAIVPTLGGQTG 95

Query: 64  EDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFT 117
            +  ++     ILE L+I    + + A   + D+   + +++    PV  S +V+     
Sbjct: 96  LNMAMELANSGILEELDIELLGTKLSAIDQAEDRDLFRNLMNELNEPVPESAIVHTVSEA 155

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IE 176
           +     +  P +++P       G  +   ++ +   +      +   Q L+E  + G  E
Sbjct: 156 IVFAGKVGFPVIVRPAFTLGGTGGGICDNEEELTETVANGLKLSPVSQCLVEISIAGYKE 215

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +   VM D + +   I V   + +     ++  +        +    ++ ++  +    +
Sbjct: 216 IEYEVMRDKNDNA--IVVCNMENFDPVGVHTGDSIVFAPTQTLTDKEHQMLRNASLKIIR 273

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           A+G  G        DP S   + +E+N  P ++  S     +   GY   +L   +
Sbjct: 274 ALGIEGGCNVQLALDPHSFNYYIIEVN--PRVSRSS--ALASKATGYPIAKLAAKI 325



 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 27/225 (12%), Positives = 78/225 (34%), Gaps = 13/225 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC--PSILVNRFTMDSQHLISPPYV 129
           L  + +    + +     + ++   +Q ++   VP     +       +     I+ P +
Sbjct: 646 LTKMGVTLLGTRVEDLDRAENRDLFEQALNELNVPQPLGDTATTAEEAVVIADRINYPVL 705

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           ++P       G+ ++     +   +  +   +    +LI++Y+ G E+    + D    +
Sbjct: 706 VRPSYVLGGRGMQIVDTQPDLENYMRNAVKASPEHPVLIDRYLVGKEVEVDAICDGKSVL 765

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               +   +           +S  V P + +  +I + +          + C G+    F
Sbjct: 766 IPGIMEHIERSGVHS----GDSMAVYPPQSLSKEIQETIVDYTTRLALGLNCLGMMNVQF 821

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    +  V+ +E+N +   T     P ++   G    ++    +
Sbjct: 822 VIHEDT--VYVIEVNPRASRT----VPFLSKVTGIPMAQVATKAI 860


>gi|11118649|gb|AAG30411.1|AF262949_2 pyruvate carboxylase [Mycobacterium smegmatis]
          Length = 1127

 Score = 75.9 bits (186), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 38/246 (15%), Positives = 83/246 (33%), Gaps = 16/246 (6%)

Query: 28  DAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87
           + G  V        +  V  H   D  +   +G   E+  + A      I +        
Sbjct: 53  EVGHPVRAYLSVDEIIRVAKHSGADAVYPG-YGFLSENPDLAAKCAEAGITFVGPSAEVL 111

Query: 88  ALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD---SQHLISPPYVIKPLKGGSSLGIIVI 144
            L+ +K R+     + G+PV  S   +    +   +   +  P  +K + GG   G+  +
Sbjct: 112 QLTGNKARAIAAARAAGLPVLSSSEPSSSVDELMAAAADMEFPLFVKAVSGGGGRGMRRV 171

Query: 145 KKDQSIPLDLLQS-----SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDF 199
              +S+   +  +     S++      L +  ++   +   ++ D + +V          
Sbjct: 172 TDRESLAEAIEAASREAESAFGDASVYLEQAVLNPRHIEVQILADGAGNVM-----HLFE 226

Query: 200 YSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
               ++        + PA  +  ++ +++   A    + IG       +FL D     VF
Sbjct: 227 RDCSVQRRHQKVVELAPAPNLSDELRQQICADAVAFARQIGYSCAGTVEFLLDERGHHVF 286

Query: 259 WLEINV 264
             E N 
Sbjct: 287 I-ECNP 291


>gi|78222983|ref|YP_384730.1| carbamoyl-phosphate synthase large subunit [Geobacter
           metallireducens GS-15]
 gi|78194238|gb|ABB32005.1| carbamoyl-phosphate synthase large subunit [Geobacter
           metallireducens GS-15]
          Length = 1081

 Score = 75.9 bits (186), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 54/278 (19%), Positives = 105/278 (37%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVDRS------------VGLVLAHLKPDLAFN 56
           SG     AL++ GF+V  +         D D +            +  ++   +PD    
Sbjct: 29  SGTQACKALKEEGFEVVLLNSNPATIMTDPDFADRTYVEPVTPDVLAKIIEKERPDAVLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G    +  V       LE   +    + + A   + D+   K+ +   G+ V  S L
Sbjct: 89  TLGGQTALNTAVAVAENGTLEKFGVELIGAKLPAIKKAEDRTLFKEAMEKIGLSVPRSGL 148

Query: 113 VNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            + +T  M+    +  P +I+P       G  +    +      +     +  D++L+E+
Sbjct: 149 AHNYTEAMEVIKTVGFPAIIRPSFTLGGTGGGIAYNMEEYEKMAMGGIDASPTDEILVEE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            V G  E    VM D + +V  I   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SVIGWKEYELEVMRDTADNVVIICSIEN----FDPMGVHTGDSITVAPAQTLTDKEYQIL 264

Query: 228 QRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
           +  A    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RDAALKIIREIGVDTGGSNIQFGINPRNGRLVVIEMNP 302



 Score = 60.5 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 27/196 (13%), Positives = 78/196 (39%), Gaps = 8/196 (4%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYV 129
           LE   +P   +   A   + D+ R ++++    +    +     F    +  + I  P V
Sbjct: 663 LEKAGVPIIGTSPDAIDRAEDRERFQEMLHKLNLLQPENGTARSFEEAEEVANRIGYPVV 722

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLD 188
           ++P        + ++   +++   +  +   +    +LI++++D  IE+    + D +  
Sbjct: 723 VRPSYVLGGRAMEIVYDVENLRRYMTTAVQASPEHPILIDKFLDKAIEIDVDALCDGTEV 782

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           V    +   +       +S  ++  + P  I  ++ +E++R   +    +  +G+   + 
Sbjct: 783 VIGGIMEHIEEAGI---HSGDSACCLPPHSISPELVEEIRRQTTVMALELNVKGL--MNV 837

Query: 249 LFDPLSRKVFWLEINV 264
            +      ++ LE+N 
Sbjct: 838 QYAIKDGTIYILEVNP 853


>gi|86608860|ref|YP_477622.1| acetyl-CoA carboxylase biotin carboxylase subunit [Synechococcus
           sp. JA-2-3B'a(2-13)]
 gi|86557402|gb|ABD02359.1| acetyl-CoA carboxylase, biotin carboxylase [Synechococcus sp.
           JA-2-3B'a(2-13)]
          Length = 451

 Score = 75.9 bits (186), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 34/221 (15%), Positives = 79/221 (35%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     +     + +      A     DK  +++ + + GVP  P    
Sbjct: 79  AIHPGYGFLAENAKFAEMCADHNLIFIGPSPEAMRKMGDKATARETMQAVGVPTVPGSRG 138

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS-----SSWNHGD 164
            I      +     I  P +IK   GG   G+ V +  Q +   L  +     +++ +G 
Sbjct: 139 LITSEEEAVKLAEKIGYPVIIKATAGGGGRGMRVARDAQELLKMLRTAQGEAQAAFGNGG 198

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            + +E++++    +   ++ D+  +V  +            K             +   +
Sbjct: 199 -VYLEKFIERPRHVEFQILADSQGNVVHLYERDCSIQRRHQKLL----EEAPSPALTASL 253

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              +   A  A + +   G    +FL D  + + +++E+N 
Sbjct: 254 RARMGAAAVKAAKVVNYVGAGTVEFLLDK-NGQFYFIEMNT 293


>gi|88803591|ref|ZP_01119116.1| pyruvate carboxylase [Polaribacter irgensii 23-P]
 gi|88780603|gb|EAR11783.1| pyruvate carboxylase [Polaribacter irgensii 23-P]
          Length = 1150

 Score = 75.9 bits (186), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 84/221 (38%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+  +    E   I +    +       DK+ +K+V  +  +PV  S   
Sbjct: 79  AIHPGYGFLSENANLAQKCEDNGIVFVGPKVSVLKALGDKITAKKVAVANNIPVIRSNEK 138

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
            ++     +    +I  P ++K   GG   G+ VI+K   +     +S          D 
Sbjct: 139 PLINVEVALSEAAIIGYPVMLKAASGGGGRGMRVIRKASELTGAFHESKREALNAFGDDT 198

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDI 223
           + +E+YV +   +   ++ D   D   +        S + +Y         P+  +  +I
Sbjct: 199 VFLEKYVMNPKHIEIQIVADNYGDTVHLYERD---CSVQRRYQ--KVIEFAPSFDLKQEI 253

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +   A    +A+    I   +FL D     ++++E+N 
Sbjct: 254 KEALYTYAINICKAVAYNNIGTVEFLVD-DDDAIYFIEVNP 293


>gi|220930279|ref|YP_002507188.1| carbamoyl-phosphate synthase, large subunit [Clostridium
           cellulolyticum H10]
 gi|220000607|gb|ACL77208.1| carbamoyl-phosphate synthase, large subunit [Clostridium
           cellulolyticum H10]
          Length = 1070

 Score = 75.9 bits (186), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 32/209 (15%), Positives = 86/209 (41%), Gaps = 13/209 (6%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPL 133
            +    + + +  ++ D+ +  +++ +  +P+         +   +  + I  P +++P 
Sbjct: 654 GVNILGTSVHSIDIAEDRYKFLKLLETLDIPIPEGNTAFSFQHAKEIANKIGYPVLVRPS 713

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
                  + ++  D+++   +  +S  +    +LI++YV G E+      D   D  E+ 
Sbjct: 714 YVLGGRAMEIVYNDKTLEEYITMASEISTEHPILIDKYVVGREMEV----DGICDGNEVL 769

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
           +P    +       S +S  V P + +  ++   ++       +A+   G+    F+ D 
Sbjct: 770 IPGIMEHIERAGVHSGDSIAVYPPRNLSKEVKATIEDYTIRLAKALKVVGLFNIQFVMD- 828

Query: 253 LSRKVFWLEIN-----VQPGMTPVSIFPE 276
             +KV+ +E+N       P M+ ++  P 
Sbjct: 829 SDQKVYVIEVNPRASRTVPIMSKITGIPM 857



 Score = 69.0 bits (168), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 52/286 (18%), Positives = 102/286 (35%), Gaps = 33/286 (11%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI---------DVDRSVGLVLA---------- 47
           G ++E + S   G     +L + G +V  I         D   +  + +           
Sbjct: 21  GQAAEFDYS---GTQACKSLREEGIEVVLINSNPATIMTDTQSADKVYIEPITLEFVKKI 77

Query: 48  --HLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
               KPD     L G  G +  VQ     IL+ L I    + + +   + D+   K+ + 
Sbjct: 78  IYKEKPDGILASLGGQTGLNMAVQLAEDGILDDLNIELLGTSLSSIKKAEDRELFKETMQ 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
                V PS +V   +  ++    I  P +I+P       G  +    +       +   
Sbjct: 138 EINEKVAPSKIVTTMQDAIEFAEKIGFPIIIRPAYTLGGSGGGIANNMEEFKYICGKGLK 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   Q+L+EQ V G  E+   VM D+S +   I     + +     ++  +        
Sbjct: 198 LSMISQVLLEQSVAGWKEIEYEVMRDSSDNCIIIC--NMENFDPVGVHTGDSIVVAPSQT 255

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +    Y+ ++  +    +A+  +G     F  +P S +   +E+N 
Sbjct: 256 LSNVEYQMLRNASIRIIRALDIKGGCNIQFALNPSSFEYVVIEVNP 301


>gi|325473620|gb|EGC76810.1| acetyl-CoA carboxylase [Treponema denticola F0402]
          Length = 439

 Score = 75.9 bits (186), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 35/213 (16%), Positives = 76/213 (35%), Gaps = 15/213 (7%)

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVNR 115
           G   E+      +E   + +         +  DK+R+++     G+PV P     I    
Sbjct: 83  GFLSENAGFAREVENAGLFWIGPKPDTIEMLGDKVRARETAVKSGLPVTPGSDGAIKELD 142

Query: 116 FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQLLIEQY 171
               +      P +IK   GG   G+ ++ K+  +  +L  +S+          + IE+Y
Sbjct: 143 EAKKTAEKCGYPVIIKAASGGGGKGMRIVHKESELAENLKIASAEAEANFADGTVYIEKY 202

Query: 172 -VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            VD   +   ++G+    V+ +            K             +  ++ + + + 
Sbjct: 203 LVDPRHVELQILGNGKGAVSVLGERDCSV----QKNHQKLIEESPSPAVSEEMREAMCKG 258

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
           A     ++  RG    +FL        +++E+N
Sbjct: 259 AVSLFSSLKYRGAGTIEFLV--SGNNFYFMEVN 289


>gi|323127062|gb|ADX24359.1| carbamoyl phosphate synthase large subunit [Streptococcus
           dysgalactiae subsp. equisimilis ATCC 12394]
          Length = 1058

 Score = 75.9 bits (186), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 50/296 (16%), Positives = 107/296 (36%), Gaps = 34/296 (11%)

Query: 25  ALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNVLHGNFG 63
           AL++ G++V  ++        D+ +                +L   +PD     L G  G
Sbjct: 36  ALKEEGYQVVLVNSNPATIMTDKEIADKVYIEPLTIEFVSRILRKERPDALLPTLGGQTG 95

Query: 64  EDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFT 117
            +  +Q     ILE L I    + + A   + D+ + KQ++     P+  S +V      
Sbjct: 96  LNMAMQLSKAGILEELGIELLGTKLSAIDQAEDRDQFKQLMKELEQPIPESEIVTSVEEA 155

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IE 176
           +     I  P +++P       G  +   +  +          +   Q LIE+ + G  E
Sbjct: 156 VAFAQTIGYPVIVRPAFTLGGTGGGMCANENELREIAESGLKLSPVTQCLIERSIAGFKE 215

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +   VM D++ +   + V   + +     ++  +        +    ++ ++  +    +
Sbjct: 216 IEYEVMRDSADNA--LVVCNMENFDPVGIHTGDSIVFAPTQTLSDSEHQMLRDASLNIIR 273

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           A+   G        DP S   + +E+N  P ++  S     +   GY   +L   +
Sbjct: 274 ALKIEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAKI 325



 Score = 74.4 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 39/293 (13%), Positives = 101/293 (34%), Gaps = 34/293 (11%)

Query: 24  SALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH-----G---NFGEDG 66
            A+++AG++   +         D   S  L    L  +   NV+      G    FG   
Sbjct: 579 KAIQEAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIDLEQPKGVVVQFGGQT 638

Query: 67  LV---QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQ 121
            +   QA+ E   +    + +     + ++ + ++ + + G+P  P          + + 
Sbjct: 639 AINLAQALSE-AGVTILGTQVDDLDRAENRDQFEKALKALGIPQPPGQTATNEAEALAAA 697

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
             I  P +++P        + +++  + +   +  +   +    +LI+ Y+ G E     
Sbjct: 698 SHIGFPVLVRPSYVLGGRAMEIVENAEDLQRYMKTTVKASPEHPVLIDSYIVGKECEVDA 757

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGC 240
           + D    +    +   +           +S  V P + +   I + +          + C
Sbjct: 758 ISDGESVLIPGIMEHIERAGVHS----GDSMAVYPPQGLSKQIQETITDYTRRLAIGLNC 813

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            G+    F+      +V+ +E+N +   T     P ++        ++   ++
Sbjct: 814 IGMMNIQFVI--KDEQVYVIEVNPRASRT----VPFLSKVTNIPMAQVATKLI 860


>gi|222056353|ref|YP_002538715.1| carbamoyl-phosphate synthase, large subunit [Geobacter sp. FRC-32]
 gi|221565642|gb|ACM21614.1| carbamoyl-phosphate synthase, large subunit [Geobacter sp. FRC-32]
          Length = 1080

 Score = 75.9 bits (186), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 54/278 (19%), Positives = 103/278 (37%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVDRS------------VGLVLAHLKPDLAFN 56
           SG     AL++ GF+V  +         D D +            +  ++   +PD    
Sbjct: 29  SGTQACKALKEEGFEVVLLNSNPATIMTDPDFADRTYIEPVTPEILAKIIEKERPDAVLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G    +  V      +L+   +    + + A   + D+   KQ +   G+ V  S L
Sbjct: 89  TLGGQTALNTAVAVAENGVLDKFGVELIGAKLPAIKKAEDRTLFKQAMEKIGLAVPRSGL 148

Query: 113 V--NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
              N   M+    I  P +I+P       G  +    +            +  D++L+E+
Sbjct: 149 AHNNAEAMEIIREIGFPAIIRPSFTLGGTGGGIAYNMEEYEKMSATGIDASPTDEILVEE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            V G  E    VM D + +V  I   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SVIGWKEYELEVMRDTADNVVIICSIEN----FDPMGVHTGDSITVAPAQTLTDKEYQIL 264

Query: 228 QRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RDASLKIIREIGVDTGGSNIQFGINPKNGRLVVIEMNP 302



 Score = 61.3 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/196 (15%), Positives = 74/196 (37%), Gaps = 8/196 (4%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--QHLISPPYV 129
           LE   +P   +   A   + D+ R ++++   G+    +     F         I  P V
Sbjct: 662 LEKAGVPIIGTSPDAIDRAEDRERFQEMLHKLGLRQPENGTARSFEEAEKVADRIGYPVV 721

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLD 188
           ++P        + ++    ++   +  +   +    +LI++++D  IE+    + D +  
Sbjct: 722 VRPSYVLGGRAMEIVYDVDNLRRYMTTAVQASPEHPILIDKFLDEAIEIDVDALCDGTEA 781

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           V    +   +       +S  ++  + P  I   I  E++R   L    +  RG+   + 
Sbjct: 782 VIGGIMEHIEEAGI---HSGDSACSLPPYSISRAITDEIRRQTKLMALELNVRGL--MNV 836

Query: 249 LFDPLSRKVFWLEINV 264
            +      ++ LE+N 
Sbjct: 837 QYAIKGGVIYILEVNP 852


>gi|261856156|ref|YP_003263439.1| carbamoyl-phosphate synthase, large subunit [Halothiobacillus
           neapolitanus c2]
 gi|261836625|gb|ACX96392.1| carbamoyl-phosphate synthase, large subunit [Halothiobacillus
           neapolitanus c2]
          Length = 1077

 Score = 75.9 bits (186), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 49/278 (17%), Positives = 103/278 (37%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G++V  I         D               +V  ++   +PD    
Sbjct: 29  SGAQACKALKEEGYRVILINSNPATIMTDPGMADATYVEPINWETVAAIIEKERPDAILP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      +LE        +   A  ++ D+ R ++ ++  G+    S++
Sbjct: 89  TMGGQTALNCALDLARNGVLEKFNCELIGASEDAIDMAEDRERFREAMADIGLSTPSSVV 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           V+      D+   +  P +I+P       G  +    +     + +    +   +LLIEQ
Sbjct: 149 VHSLEEAFDALSDLGFPVIIRPSFTMGGSGGGIAYNREEYEEIVRRGLDLSPTSELLIEQ 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            V G  E    V+ D + +   I   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SVLGWKEYEMEVVRDRNDNCIIICSIEN----FDPMGVHTGDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P +  +  +E+N 
Sbjct: 265 RNASLAVLRKIGVETGGSNVQFAVNPENGAMIVIEMNP 302



 Score = 59.8 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 30/220 (13%), Positives = 82/220 (37%), Gaps = 12/220 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           LE    P   +   A   + D+ R + ++S  G+   P+         ++    I  P V
Sbjct: 655 LEKAGAPIIGTTPDAIDRAEDRERFQAMISELGLKQPPNRTARSTDEAINLAAQIGYPLV 714

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  ++ +   +  +   ++   +L+++++ D  E+    + D    
Sbjct: 715 VRPSYVLGGRAMEIVHNEEGLKRYMRDAVKASNDSPVLLDRFLDDATEMDIDAVCDGETV 774

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           V    +   +       +S  ++  + P  +   +  EV+       +A+   G+   + 
Sbjct: 775 VIGGLMEHIEMAGV---HSGDSACSLPPYTVAAPVLAEVRAQVTAMAKALNVVGL--MNT 829

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
                  ++F +E+N +   T     P ++   G    ++
Sbjct: 830 QVAIQGNEIFIIEVNPRASRT----VPFVSKAVGIPLAKI 865


>gi|314927795|gb|EFS91626.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium
           acnes HL044PA1]
 gi|328907259|gb|EGG27025.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium sp.
           P08]
          Length = 1068

 Score = 75.9 bits (186), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 45/268 (16%), Positives = 101/268 (37%), Gaps = 30/268 (11%)

Query: 25  ALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNVLHGNFG 63
           AL++ G++V  ++        DR +                +L   +PD     L G  G
Sbjct: 36  ALKEEGYEVILVNSNPATIMTDRDIADKVYIEPITFEFVSSILRRERPDAIVPTLGGQTG 95

Query: 64  EDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
            +   +     IL+ L I    + + A   + D+   KQ++   G PV  S +V+     
Sbjct: 96  LNMATELAKSGILDELGIELLGTKLSAIEKAEDRDLFKQLMDELGQPVPASEIVHTIDEA 155

Query: 120 SQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IE 176
            +  + I  P +++P       G  +   +  +   + +    +   + L+EQ + G  E
Sbjct: 156 VKVGNTIGYPLIVRPAYTLGGTGGGLCHDEAELERIVGKGLELSPVTECLVEQSIAGYKE 215

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +   +M D + +   + V   + +     ++  +        +    ++ ++  +    +
Sbjct: 216 IEYEMMRDGADNT--MVVCTMENFDPVGVHTGDSIVFAPTQTLTDVEHEMLRDASIEIVR 273

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINV 264
           A+G  G        DP S + + +E+N 
Sbjct: 274 ALGIEGGCNVQLALDPNSFQYYVIEVNP 301



 Score = 73.6 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 44/297 (14%), Positives = 107/297 (36%), Gaps = 36/297 (12%)

Query: 24  SALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLV------ 68
            A++ AG++   +         D   S  L    L  +   NV+      DG++      
Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSISDKLYFEPLTFEDVMNVID-LEQPDGVIVQFGGQ 637

Query: 69  -----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQ 121
                   L    +P   + +     + D+   + +++  G+P  P          +   
Sbjct: 638 TAINLAGPLSAAGVPILGTQLADLDRAEDREGFESLLAELGIPQAPGGTARSSEEALAVA 697

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
             +  P +++P        + ++   + +   +  +   +    +L+++Y++G+E     
Sbjct: 698 EELGYPVLVRPSYVIGGRAMAIVTSTKELKRYMRDAVHTSPDKPVLVDRYLNGLECEVDA 757

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGC 240
           + D     T++ +P    +       S +S  V P  ++   +   +  +     + +  
Sbjct: 758 ICDG----TDVLIPGIMEHIERAGVHSGDSMAVYPPQRMSQQVTDRIVEVTTKLARGLNT 813

Query: 241 RGISRSDFLF--DPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +GI    F+   DP S +  V+ +E N +   T     P ++   G S  E+   ++
Sbjct: 814 KGILNIQFVIANDPTSGEETVYVIEANPRASRT----VPFLSKVTGVSMAEVATQII 866


>gi|297156179|gb|ADI05891.1| Carbamoyl-phosphate synthase L chain ATP- binding protein
           [Streptomyces bingchenggensis BCW-1]
          Length = 492

 Score = 75.9 bits (186), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 37/219 (16%), Positives = 78/219 (35%), Gaps = 17/219 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   ED     + E   I +            DK  ++ +++  G+PV P    
Sbjct: 77  AIHPGYGFLSEDPDFAEVCEDSGITFIGPPASVMQRLGDKAAARALMAEAGLPVLPGSTG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
            +       D    I  P ++K + GG   G+ V+++  ++     ++ +        ++
Sbjct: 137 AVATPAEAKDIAGRIGYPLILKAVAGGGGRGMAVVREPDALVPAFNETRAHARAVFGDER 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           L +E++V+    +   V+ D    V  +            K             +P +  
Sbjct: 197 LYMERFVEHARHVEVQVLADRHGKVVHLGERDCSVQRRHQKM----VEEAPAPNLPQERR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
             +   A     A+G  G    +F+  P   + + +EIN
Sbjct: 253 TAMCAAAVRGAAAVGYVGAGTFEFVLTP-DHEFYLMEIN 290


>gi|229060211|ref|ZP_04197580.1| Biotin carboxylase [Bacillus cereus AH603]
 gi|228719093|gb|EEL70705.1| Biotin carboxylase [Bacillus cereus AH603]
          Length = 445

 Score = 75.9 bits (186), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 80/220 (36%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       +   I +             K+ S+  + +  VPV P I  
Sbjct: 77  AIHPGYGLLSENPSFPIRCKEEGIVFIGPSEEIITKMGSKIESRIAMQAADVPVVPGITT 136

Query: 114 N----RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
           N       ++    I  P ++K   GG  +G+ +++ +Q++         ++ ++    +
Sbjct: 137 NIETAEEAIEIAKQIGYPLMLKASAGGGGIGMQLMETEQTLTKAFESNKTRAQNFFGNGE 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+Y+ D   +   ++ D   +   +   +        K             +     
Sbjct: 197 MYLERYIADAHHIEIQLLADTHGNTVYLWERECSVQRRNQK----VIEEAPSPFLDEGTR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K +  +A  A +A+G       +FL D      ++LE+N 
Sbjct: 253 KAMGEVAVQAAKALGYTNAGTVEFLVDDQKN-FYFLEMNT 291


>gi|229044241|ref|ZP_04191915.1| Biotin carboxylase [Bacillus cereus AH676]
 gi|229109950|ref|ZP_04239531.1| Biotin carboxylase [Bacillus cereus Rock1-15]
 gi|229145128|ref|ZP_04273520.1| Biotin carboxylase [Bacillus cereus BDRD-ST24]
 gi|296503075|ref|YP_003664775.1| acetyl-CoA carboxylase biotin carboxylase subunit [Bacillus
           thuringiensis BMB171]
 gi|228638326|gb|EEK94764.1| Biotin carboxylase [Bacillus cereus BDRD-ST24]
 gi|228673517|gb|EEL28780.1| Biotin carboxylase [Bacillus cereus Rock1-15]
 gi|228725112|gb|EEL76395.1| Biotin carboxylase [Bacillus cereus AH676]
 gi|296324127|gb|ADH07055.1| acetyl-CoA carboxylase biotin carboxylase subunit [Bacillus
           thuringiensis BMB171]
          Length = 445

 Score = 75.9 bits (186), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 80/220 (36%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       +   I +             K+ S+  + +  VPV P I  
Sbjct: 77  AIHPGYGLLSENPSFPVRCKEEGIVFIGPSEEIITKMGSKIESRIAMQAADVPVVPGITT 136

Query: 114 N----RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
           N       ++    I  P ++K   GG  +G+ +++ +Q++         ++ ++    +
Sbjct: 137 NIETAEEAIEIAKQIGYPLMLKASAGGGGIGMQLMETEQTLTKAFESNKTRAQNFFGNGE 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+Y+ D   +   ++ D   +   +   +        K             +     
Sbjct: 197 MYLERYIADAHHIEIQLLADTHGNTVYLWERECSVQRRNQK----VIEEAPSPFLDEGTR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K +  +A  A +A+G       +FL D      ++LE+N 
Sbjct: 253 KAMGEVAVQAAKALGYTNAGTVEFLVDNQKN-FYFLEMNT 291


>gi|30020612|ref|NP_832243.1| acetyl-CoA carboxylase biotin carboxylase subunit [Bacillus cereus
           ATCC 14579]
 gi|229130894|ref|ZP_04259825.1| Biotin carboxylase [Bacillus cereus BDRD-Cer4]
 gi|29896164|gb|AAP09444.1| Propionyl-CoA carboxylase biotin-containing subunit [Bacillus
           cereus ATCC 14579]
 gi|228652576|gb|EEL08483.1| Biotin carboxylase [Bacillus cereus BDRD-Cer4]
          Length = 445

 Score = 75.9 bits (186), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 80/220 (36%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       +   I +             K+ S+  + +  VPV P I  
Sbjct: 77  AIHPGYGLLSENPSFPVRCKEEGIVFIGPSEEIITKMGSKIESRIAMQAADVPVVPGITT 136

Query: 114 N----RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
           N       ++    I  P ++K   GG  +G+ +++ +Q++         ++ ++    +
Sbjct: 137 NIETAEEAIEIAKQIGYPLMLKASAGGGGIGMQLMETEQTLTKAFESNKTRAQNFFGNGE 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+Y+ D   +   ++ D   +   +   +        K             +     
Sbjct: 197 MYLERYIADAHHIEIQLLADTHGNTVYLWERECSVQRRNQK----VIEEAPSPFLDEGTR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K +  +A  A +A+G       +FL D      ++LE+N 
Sbjct: 253 KAMGEVAVQAAKALGYTNAGTVEFLVDNQKN-FYFLEMNT 291


>gi|77462742|ref|YP_352246.1| propionyl-CoA carboxylase alpha subunit [Rhodobacter sphaeroides
           2.4.1]
 gi|77387160|gb|ABA78345.1| Propionyl-CoA carboxylase alpha subunit [Rhodobacter sphaeroides
           2.4.1]
          Length = 695

 Score = 75.9 bits (186), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 74/220 (33%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E     A LE   + +      A     DK+ SK++    GV   P  + 
Sbjct: 106 AVHPGYGFLSERMDFAAALEAAGVVFIGPPSGAIEAMGDKITSKKLAKEAGVSTVPGYMG 165

Query: 114 NRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
                D      + I  P +IK   GG   G+ +   +  +         ++++    D+
Sbjct: 166 LIADADEAVKISNEIGYPVMIKASAGGGGKGMRIAWSEAEVKEGFESSKNEAANSFGDDR 225

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE++V     +   V+ D   +   +   +        K             +     
Sbjct: 226 IFIEKFVTQPRHIEIQVLADKHGNCVYLHERECSIQRRNQK----VIEEAPSPFLDEATR 281

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K +   A    +A+G       +F+ D      ++LE+N 
Sbjct: 282 KAMGEQACALAKAVGYASAGTVEFIVDGQKN-FYFLEMNT 320


>gi|255523982|ref|ZP_05390944.1| acetyl-CoA carboxylase, biotin carboxylase [Clostridium
           carboxidivorans P7]
 gi|296186843|ref|ZP_06855244.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Clostridium
           carboxidivorans P7]
 gi|255512269|gb|EET88547.1| acetyl-CoA carboxylase, biotin carboxylase [Clostridium
           carboxidivorans P7]
 gi|296048557|gb|EFG87990.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Clostridium
           carboxidivorans P7]
          Length = 448

 Score = 75.9 bits (186), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 33/221 (14%), Positives = 78/221 (35%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  FG   E+     + E   I +            +K  ++ ++    VP+ P    
Sbjct: 77  AIHPGFGFLSENSKFAKMCEECNITFIGPNADCIDDMGNKSNARDIMIKAKVPIVPGSKG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGDQ 165
            I   +  +     I  P ++K   GG   GI V+ +++ +         ++ +      
Sbjct: 137 AIKDEKQLLKVAKEIGYPVMVKASAGGGGRGIRVVYEEKDLIKDYENAKAEAEASFGDGT 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDI 223
           + +E++++    +   ++GD   +V  +            K          P  I   ++
Sbjct: 197 IYVEKFIEKPRHVEIQILGDNHGNVVYLGERDCSMQRRNQK-----VLEEAPCPIMTKEL 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             ++   A  A + +        +FL D  +   +++E+N 
Sbjct: 252 RAKMGETAVRAAKTVKYNSAGTIEFLLDK-NMDFYFMEMNT 291


>gi|251782209|ref|YP_002996511.1| carbamoyl phosphate synthase large subunit [Streptococcus
           dysgalactiae subsp. equisimilis GGS_124]
 gi|242390838|dbj|BAH81297.1| carbamoyl-phosphate synthase large chain [Streptococcus
           dysgalactiae subsp. equisimilis GGS_124]
          Length = 1058

 Score = 75.9 bits (186), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 50/296 (16%), Positives = 107/296 (36%), Gaps = 34/296 (11%)

Query: 25  ALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNVLHGNFG 63
           AL++ G++V  ++        D+ +                +L   +PD     L G  G
Sbjct: 36  ALKEEGYQVVLVNSNPATIMTDKEIADKVYIEPLTIEFVSRILRKERPDALLPTLGGQTG 95

Query: 64  EDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFT 117
            +  +Q     ILE L I    + + A   + D+ + KQ++     P+  S +V      
Sbjct: 96  LNMAMQLSKAGILEELGIELLGTKLSAIDQAEDRDQFKQLMKELEQPIPESEIVTSVEEA 155

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IE 176
           +     I  P +++P       G  +   +  +          +   Q LIE+ + G  E
Sbjct: 156 VAFAQTIGYPVIVRPAFTLGGTGGGMCANENELREIAESGLKLSPVTQCLIERSIAGFKE 215

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +   VM D++ +   + V   + +     ++  +        +    ++ ++  +    +
Sbjct: 216 IEYEVMRDSADNA--LVVCNMENFDPVGIHTGDSIVFAPTQTLSDSEHQMLRDASLNIIR 273

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           A+   G        DP S   + +E+N  P ++  S     +   GY   +L   +
Sbjct: 274 ALKIEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAKI 325



 Score = 74.4 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 37/264 (14%), Positives = 92/264 (34%), Gaps = 30/264 (11%)

Query: 24  SALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH-----G---NFGEDG 66
            A+++AG++   +         D   S  L    L  +   NV+      G    FG   
Sbjct: 579 KAIQEAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIDLEQPKGVVVQFGGQT 638

Query: 67  LV---QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQ 121
            +   QA+ E   +    + +     + ++ + ++ + + G+P  P          + + 
Sbjct: 639 AINLAQALSE-AGVTILGTQVDDLDRAENRDQFEKALKALGIPQPPGQTATNEAEALAAA 697

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
             I  P +++P        + +++  + +   +  +   +    +LI+ Y+ G E     
Sbjct: 698 SHIGFPVLVRPSYVLGGRAMEIVENAEDLQRYMKTAVKASPEHPVLIDSYIVGKECEVDA 757

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGC 240
           + D    +    +   +           +S  V P + +   I + +          + C
Sbjct: 758 ISDGESVLIPGIMEHIERAGVHS----GDSMAVYPPQGLSKQIQETITDYTRRLAIGLNC 813

Query: 241 RGISRSDFLFDPLSRKVFWLEINV 264
            G+    F+      +V+ +E+N 
Sbjct: 814 IGMMNIQFVI--KDEQVYVIEVNP 835


>gi|310642670|ref|YP_003947428.1| acetyl/propionyl-CoA carboxylase alpha subunit-like protein
           [Paenibacillus polymyxa SC2]
 gi|309247620|gb|ADO57187.1| Acetyl/propionyl-CoA carboxylase alpha subunit-like protein
           [Paenibacillus polymyxa SC2]
          Length = 447

 Score = 75.9 bits (186), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 82/221 (37%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     I E   I +      A     DK  +KQ +   GVPV P    
Sbjct: 78  AIHPGYGFLAENADFAEICESCNITFIGPSPEAINKMGDKAVAKQTMKDAGVPVIPGSDG 137

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS-----SSWNHGD 164
            +   +  +     I  P +IK   GG   GI + + + ++   +  +      ++ +  
Sbjct: 138 LVEDVQDAISIARDIGYPVIIKATAGGGGKGIRIAEDEDNLIQQITTAQQEAQKAFGNAG 197

Query: 165 QLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            + +E+Y+ G   +   ++ D   +V  +            K             +  D+
Sbjct: 198 -VYLEKYLTGMKHVEIQIIADKHGNVAYLGERDCSVQRRRQKLL----EEAPCPVLSQDV 252

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +E+ + A  A  A+   G    +FL  P   K +++E+N 
Sbjct: 253 REEMGQAAVRAALAVQYSGAGTLEFLLGP-DNKFYFMEMNT 292


>gi|89889699|ref|ZP_01201210.1| acetyl-CoA carboxylase biotin carboxylase [Flavobacteria bacterium
           BBFL7]
 gi|89517972|gb|EAS20628.1| acetyl-CoA carboxylase biotin carboxylase [Flavobacteria bacterium
           BBFL7]
          Length = 448

 Score = 75.9 bits (186), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 80/221 (36%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     I    +I +  +     A   DK  +K+ + + GVP  P    
Sbjct: 77  AIHPGYGFLSENADFSRICGEHDIKFIGASPDMIAKMGDKATAKETMKAAGVPCVPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS-----SSWNHGD 164
            I               P ++K   GG   G+  + K++ +      +     +++ + D
Sbjct: 137 IIADFDDCKKIALETGYPVMLKATAGGGGKGMRAVWKEEDLLAAWESARQESKAAFGNDD 196

Query: 165 QLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
             + E+ ++    +   V+GD+      ++           K     +  V    +   +
Sbjct: 197 MYM-EKLIEEPRHIEIQVVGDSYGKACHLSERDCSVQRRHQK----LTEEVPSPFMTKKL 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            KE+   A  A + I   G    +FL D   R  +++E+N 
Sbjct: 252 RKEMGEAAVKAAEFIKYEGAGTVEFLVDKH-RNFYFMEMNT 291


>gi|118580936|ref|YP_902186.1| carbamoyl-phosphate synthase, large subunit [Pelobacter propionicus
           DSM 2379]
 gi|118503646|gb|ABL00129.1| carbamoyl-phosphate synthase large subunit [Pelobacter propionicus
           DSM 2379]
          Length = 1078

 Score = 75.9 bits (186), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 54/278 (19%), Positives = 104/278 (37%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVDRS------------VGLVLAHLKPDLAFN 56
           SG     AL++ G++V  +         D D +            +  ++   +PD    
Sbjct: 29  SGTQACKALKEEGYEVVLLNSNPATIMTDPDFADHTYIEPVTPEILARIIEKERPDAILP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G    +  V      ILE   +    + + A   + D+   KQ + + G+ +  S L
Sbjct: 89  TLGGQTALNTAVAVAESGILERFGVELIGAKLPAIKKAEDRTLFKQAMENIGLAIPRSGL 148

Query: 113 VN--RFTMDSQHLISPPYVIKPL-KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            +  +  MD    +  P +I+P    G S G I    ++   + +    +    + L+ E
Sbjct: 149 AHNRQEAMDVITCVGFPAIIRPSFTLGGSGGGIAYNMEEYEKMAVAGIDASPTDEILVEE 208

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
             +   E    VM D + +V  I   ++ D           +S  V PA+ +    Y+ +
Sbjct: 209 SVIGWKEYELEVMRDTADNVVIICSIENLDPMGVHT----GDSITVAPAQTLTDKEYQIL 264

Query: 228 QRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P   ++  +E+N 
Sbjct: 265 RDASLKIIREIGVDTGGSNIQFGINPNDGRLVVIEMNP 302



 Score = 55.1 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/196 (14%), Positives = 77/196 (39%), Gaps = 8/196 (4%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYV 129
           LE   +P   +   A   + D+ R ++++    +    + +   F     +   I  P V
Sbjct: 660 LEKAGVPIIGTSPDAIDRAEDRERFQEMLFKLELLQPENGIARSFEEAEKAAERIGYPVV 719

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLD 188
           ++P        + ++    ++   +  +   +    +LI++++D  IE+    + D +  
Sbjct: 720 VRPSYVLGGRAMEIVYDVDNLRRYMTTAVQASPEHPILIDKFLDEAIEIDVDALCDGTEV 779

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           V    +   +       +S  ++  + P  I  ++  E++R   L    +  +G+   + 
Sbjct: 780 VIGGIMEHIEEAGI---HSGDSACSLPPYSISPEMVAEIRRQTSLMALELNVKGL--MNV 834

Query: 249 LFDPLSRKVFWLEINV 264
            +     +V+ LE+N 
Sbjct: 835 QYAIKDGRVYILEVNP 850


>gi|328952761|ref|YP_004370095.1| carbamoyl-phosphate synthase, large subunit [Desulfobacca
           acetoxidans DSM 11109]
 gi|328453085|gb|AEB08914.1| carbamoyl-phosphate synthase, large subunit [Desulfobacca
           acetoxidans DSM 11109]
          Length = 1080

 Score = 75.9 bits (186), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 50/278 (17%), Positives = 103/278 (37%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQID------------VDRS---------VGLVLAHLKPDLAFN 56
           SG     AL++ GF+V  I+             DR+         V  ++   +PD    
Sbjct: 29  SGVQACKALKEEGFEVVLINSNPATIMTDPEIADRTYIEPITPEMVCKIIERERPDAILP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G  G +  V      IL+ L +    +       + D+   +  +++  + V  S++
Sbjct: 89  TLGGQTGLNCAVAVADTGILKRLGVEMIGASPEVIKKAEDRQLFRDAMANINLRVPTSVI 148

Query: 113 VNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           V      +++  ++S P +++P       G  +    + +          +   ++++E+
Sbjct: 149 VRSMAEVLEAPEVLSYPIIVRPSFTLGGTGGGIAYNLEDLKELSAYGLEASMIQEVMLEE 208

Query: 171 YVDG-IELTCGVMGD-ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            V G  E    VM D     V   ++   D           +S  V PA+ +    Y+ +
Sbjct: 209 SVLGWKEFELEVMRDVKDNVVIICSIENLDPMGVHT----GDSITVAPAQTLSDREYQRM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F   P + ++  +E+N 
Sbjct: 265 RDASLAIIREIGVETGGSNIQFAVQPQTGEMVVIEMNP 302



 Score = 55.1 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 40/230 (17%), Positives = 84/230 (36%), Gaps = 14/230 (6%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTMDSQHLISPPYV 129
           L         +   A   + D+ R K+++S   +    +         +     I  P V
Sbjct: 659 LAQAGAKILGTSPDAIDRAEDRERFKRLLSGLKLRQPDNGTAASTAQALKIAKQIGYPVV 718

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  D+ +   +  +   +    +LI++++ D IE+    + D    
Sbjct: 719 VRPSYVLGGRAMQIVADDRVLANFMSWALEASPEHPILIDKFLEDAIEVDVDAIADGKTT 778

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           +    +   +    E    S +S  VLP   +P  I KE+ R        +G  G+    
Sbjct: 779 IIGGIMEHIE----EAGIHSGDSACVLPPYSLPPAILKEITRQTQALAAELGVVGLMNIQ 834

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           F       +V+ LE+N +   T     P ++   G    +L   ++  A+
Sbjct: 835 FAV--KDGQVYILEVNPRASRT----IPFVSKATGVPLAKLATKVMLGAT 878


>gi|295394635|ref|ZP_06804854.1| acetyl-coA carboxylase carboxyl transferase subunit alpha
           [Brevibacterium mcbrellneri ATCC 49030]
 gi|294972528|gb|EFG48384.1| acetyl-coA carboxylase carboxyl transferase subunit alpha
           [Brevibacterium mcbrellneri ATCC 49030]
          Length = 740

 Score = 75.9 bits (186), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 80/220 (36%), Gaps = 23/220 (10%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      +    + +      A      K+RSK+++ + GVP     ++
Sbjct: 108 AIHPGYGFLSENAEFARAVMDAGLTWIGPSPEAIESMGSKVRSKELMDAAGVP-----IL 162

Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL----DLLQSSSWNHGDQLLIE 169
                DS      P ++K   GG   G+ V     ++         ++ S      +  E
Sbjct: 163 TNMEPDSITEADLPVLVKASAGGGGRGMRVADSMDALAETIESAKREAQSAFGDSTVFCE 222

Query: 170 QYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL----DIY 224
           +Y+  G  +   V+GD   +V  +   +        K          PA +      ++ 
Sbjct: 223 RYIPAGHHVEVQVVGDMHGNVWAVGERECSIQRRHQK-----VVEEAPAPLVERHGQELR 277

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             + + A  A   IG  G    +FL D  + + F+LE+N 
Sbjct: 278 DRLFQAAKDAATRIGYVGAGTVEFLAD-SNGEFFFLEMNT 316


>gi|290968036|ref|ZP_06559585.1| pyruvate carboxylase [Megasphaera genomosp. type_1 str. 28L]
 gi|290781942|gb|EFD94521.1| pyruvate carboxylase [Megasphaera genomosp. type_1 str. 28L]
          Length = 1144

 Score = 75.9 bits (186), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 51/281 (18%), Positives = 102/281 (36%), Gaps = 34/281 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AV     S E  +SL   +A  S L  AG K     +D    + +AH + D+  + +H 
Sbjct: 31  VAV----YSQEDSLSLHRFRADESYLVGAGKKPVDAYLDIEDIIRIAH-EHDV--DAIHP 83

Query: 61  NFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV--------PVCP 109
            +G   E+  +    E   I +    +    +  DK+ ++      G+        PV  
Sbjct: 84  GYGFLSENADLAKRCEEEGIIFIGPRVEHLIMFGDKINARIQAKKAGIQFIPGSDGPVMN 143

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS-----SSWNHGD 164
              V RF  +    +  P ++K + GG   G+ ++     +     ++      ++ + +
Sbjct: 144 YEEVKRFAKE----VGFPIMLKAVNGGGGRGMRMVNNMADLQEAYDRAKSEAKLAFGNDE 199

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDI 223
             L +  V+   +   +MGD   +V  +            K        V PA  +P  +
Sbjct: 200 IYLEKCIVNPKHIEVQIMGDEHGNVIHLHERDCSIQRRHQK-----VVEVAPAFSLPPAL 254

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              +   A    + +        +FL  P     +++E+N 
Sbjct: 255 RARICDAAITLMKNVHYVNAGTVEFLVTPDEN-FYFIEVNP 294


>gi|70734173|ref|YP_257813.1| acetyl-CoA carboxylase biotin carboxylase subunit [Pseudomonas
           fluorescens Pf-5]
 gi|68348472|gb|AAY96078.1| acetyl-CoA carboxylase, biotin carboxylase [Pseudomonas fluorescens
           Pf-5]
          Length = 447

 Score = 75.9 bits (186), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 78/222 (35%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         L  DK+ +K  + + GVP  P    
Sbjct: 76  AIHPGYGFLAENADFAEQVENSGFAFIGPKAETIRLMGDKVSAKHAMIAAGVPTVPGSDG 135

Query: 112 LVNRFTMDSQHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGD 164
            +      +  +   +  P +IK   GG   G+ V+ K++ +         ++ +     
Sbjct: 136 PLPEDEETALRIGREVGYPVIIKAAGGGGGRGMRVVHKEEDLIASAKLTRSEAGAAFGNP 195

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+++     +   V+ D   +               L+          PA  I   
Sbjct: 196 MVYLEKFLTNPRHVEVQVLSDGQGNAI-----HLGDRDCSLQRRHQKVLEEAPAPGIDET 250

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +EV      A   IG RG    +FL+   + + +++E+N 
Sbjct: 251 ARQEVFARCVKACIDIGYRGAGTFEFLY--ENGRFYFIEMNT 290


>gi|38233253|ref|NP_939020.1| pyruvate carboxylase [Corynebacterium diphtheriae NCTC 13129]
 gi|38199512|emb|CAE49163.1| pyruvate carboxylase [Corynebacterium diphtheriae]
          Length = 1141

 Score = 75.9 bits (186), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 37/242 (15%), Positives = 84/242 (34%), Gaps = 23/242 (9%)

Query: 35  QIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKM 94
            +D+D  +         D  +   +G   E+  +        I +         L+ DK 
Sbjct: 75  YLDIDE-IIRAAKQTGADAIYPG-YGFLSENAQLARECAENGITFIGPPPSVLELTGDKA 132

Query: 95  RSKQVVSSCGVPVCPSILVNRFTMDSQHLIS------PPYVIKPLKGGSSLGIIVIKKDQ 148
            +       G+P    +     T D + L         P  +K + GG   G+  +   +
Sbjct: 133 AAVTAAREAGLPT---LTETEATDDPKKLAELTKGQTYPLFVKAVAGGGGRGMRFVDAPE 189

Query: 149 SIPLDLLQSSSWNH----GDQLLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYE 203
           ++     ++S          ++  E+  ++   +   ++GD++ ++  +           
Sbjct: 190 NLEKLAAEASREAAAAFGDGRVYAERAVINPQHIEVQILGDSAGNIIHLYE-----RDCS 244

Query: 204 LKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
           L+        + PA+ +   + +++   A    + IG +G    +FL D     VF  E+
Sbjct: 245 LQRRHQKVVEIAPAQHLAPGLREKICADAVAFARHIGYQGAGTVEFLVDEEGNHVFI-EM 303

Query: 263 NV 264
           N 
Sbjct: 304 NP 305


>gi|30248664|ref|NP_840734.1| accC1; biotin carboxylase protein [Nitrosomonas europaea ATCC
           19718]
 gi|30180259|emb|CAD84564.1| accC1; biotin carboxylase protein [Nitrosomonas europaea ATCC
           19718]
          Length = 452

 Score = 75.9 bits (186), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 84/222 (37%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         L  DK+ +K  +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAERVEKSGFFFIGPRPDTIRLMGDKVSAKNAMRQAGVPCVPGSGG 136

Query: 112 LVNRFTMDSQHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGD 164
            +     + + +   I  P +IK   GG   G+ V+  + ++   ++    ++ +     
Sbjct: 137 ALPESLDEVKKIVKEIGYPVIIKAAGGGGGRGMRVVHTEAALSNAVITTRNEAQTAFGNP 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            +  E+Y++    +   V+ D   +V  +            K          PA+ I + 
Sbjct: 197 VVYAEKYLENPRHIEFQVLADEYGNVVHLGERDCSMQRRHQK-----IIEEAPARGISVQ 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +  ++  L   A + I  RG+   +FL+   + + +++E+N 
Sbjct: 252 LRDKIGELCVEACKRINYRGVGTFEFLY--ENNEFYFIEMNT 291


>gi|319940940|ref|ZP_08015277.1| pyruvate carboxylase [Sutterella wadsworthensis 3_1_45B]
 gi|319805513|gb|EFW02308.1| pyruvate carboxylase [Sutterella wadsworthensis 3_1_45B]
          Length = 1235

 Score = 75.9 bits (186), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 41/225 (18%), Positives = 88/225 (39%), Gaps = 26/225 (11%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   ED     +     I +  +   A  L  +K+ +++V  S G+PV P    
Sbjct: 89  AIHPGWGFASEDNNFPKLCAEAGITFIGATAEAMHLLGNKVEARRVARSLGIPVVPG--- 145

Query: 114 NRFTMDSQ------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----G 163
           +  ++D        H I  P ++K   GG   GI ++  +  +     ++S+        
Sbjct: 146 SDESVDVPGARKIVHEIGLPIMLKAEGGGGGRGIFLVTNEDELEDAFEKASAMAEASFGN 205

Query: 164 DQLLIEQYVDGI-ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK---I 219
            +L +E+Y+  +  +   V+ D         V   D     ++ ++     V P+    +
Sbjct: 206 PRLFVEKYLPKVHHIEIQVIADR-----WGNVFAFDERDCTVQRNNQKLLEVTPSPWRGM 260

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              +  E++  A     A+G   ++  +FL      + + +E+N 
Sbjct: 261 TPKLRAELKDYARRLVLAVGYHSVATVEFLVTEA-GEPYMIEVNT 304


>gi|295098841|emb|CBK87930.1| acetyl-CoA carboxylase, biotin carboxylase [Eubacterium
           cylindroides T2-87]
          Length = 455

 Score = 75.9 bits (186), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 83/220 (37%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     +++  ++ +         +  DK ++++++   GVPV      
Sbjct: 77  AVHPGYGFLSENAKFARLVQECDMTFVGPNPKLIQMMGDKTQARKLMKEAGVPVVEGCED 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN----HGDQ 165
            +       +    I  P +IK   GG   G+ ++ K + +     ++          D+
Sbjct: 137 ALKSVEDAKNMAESIGYPVIIKARLGGGGRGMRIVYKAEDLENAYTEARQEAKVCFENDE 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+YV+    +   ++GD    V  +      F     + +           +  D  
Sbjct: 197 VYMERYVENPKHIEVQILGDHYGHVVHLFERDCSF----QRKNQKIIEEAPCTALTRDNR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +++   A  A ++IG       +FL D      +++E+N 
Sbjct: 253 EKLLSQAVNAARSIGYDSAGTMEFLMDKQGN-FYFMEMNT 291


>gi|294012372|ref|YP_003545832.1| methylcrotonyl-CoA carboxylase alpha subunit [Sphingobium japonicum
           UT26S]
 gi|292675702|dbj|BAI97220.1| methylcrotonyl-CoA carboxylase alpha subunit [Sphingobium japonicum
           UT26S]
          Length = 630

 Score = 75.9 bits (186), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 46/229 (20%), Positives = 90/229 (39%), Gaps = 28/229 (12%)

Query: 58  LHGNFG---EDGLV-QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
           +H  +G   E+    QA+++   + +      +      K  +K+++S  GVPV P  L 
Sbjct: 78  IHPGYGFLSENAAFAQAVID-AGLIWVGPNPASITAMGLKDAAKKLMSEAGVPVTPGYLG 136

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
              + +        I  P +IK + GG   G+  +   ++    LL    +++S    DQ
Sbjct: 137 EDQSAERLQSEADAIGYPVLIKAVAGGGGKGMRRVDAPEAFADALLSCQREAASSFGNDQ 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           +LIE+Y+     +   V GD     +   V         L+          PA  +    
Sbjct: 197 VLIEKYILSPRHIEVQVFGD-----SHGQVVHLFERDCSLQRRHQKVIEEAPAPGMDAAT 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK--------VFWLEINV 264
            + +   A  A QA+   G    +F+ D  +++        ++++E+N 
Sbjct: 252 REAICGAAVRAAQAVDYVGAGTVEFIADASAKEGGGLRADRIWFMEMNT 300


>gi|254822431|ref|ZP_05227432.1| pyruvate carboxylase [Mycobacterium intracellulare ATCC 13950]
          Length = 1127

 Score = 75.9 bits (186), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 38/247 (15%), Positives = 83/247 (33%), Gaps = 18/247 (7%)

Query: 28  DAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87
           + G  V        +         D  +   +G   E+  + A      I +        
Sbjct: 53  EEGHPVRAYLSVDDIVGTAQACGADAIYPG-YGFLSENPDLAAACAAAGITFVGPSAEVL 111

Query: 88  ALSMDKMRSKQVVSSCGVPV----CPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIV 143
            L+ +K R+     + G+PV     PS   +   + +   ++ P  +K + GG   G+  
Sbjct: 112 ELTGNKARAIAAARAAGLPVLASSAPSTSADEL-VTAAESMTFPLFVKAVAGGGGRGMRR 170

Query: 144 IKKDQSIPLDLLQS-----SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD 198
           +    ++P  +  +     S++      L +  ++   +   ++ D   +V  +      
Sbjct: 171 VTDPAALPEAIEAASREAESAFGDASVFLEQAVINPRHIEVQILADNHGNVIHLYE---- 226

Query: 199 FYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
                ++        + PA  +   + + +   A    Q+IG       +FL D     V
Sbjct: 227 -RDCSVQRRHQKVIEIAPAPNLDPQLRERICADAVAFAQSIGYTCAGTVEFLLDERGNHV 285

Query: 258 FWLEINV 264
           F  E+N 
Sbjct: 286 FI-EMNP 291


>gi|196230927|ref|ZP_03129788.1| acetyl-CoA carboxylase, biotin carboxylase [Chthoniobacter flavus
           Ellin428]
 gi|196225268|gb|EDY19777.1| acetyl-CoA carboxylase, biotin carboxylase [Chthoniobacter flavus
           Ellin428]
          Length = 454

 Score = 75.9 bits (186), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 74/221 (33%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     + E   I +      A     DK  ++      G+PV P    
Sbjct: 77  AIHPGYGFLSENAHFAEVCESCNIKFIGPPPAAIRAMGDKNTARATAKKAGMPVTPGSEG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGDQ 165
            +   +  +     I  P +IK   GG   G+     D S+         ++        
Sbjct: 137 IVETEKDALRIARQIGYPVMIKATAGGGGRGMRPAHNDGSLVQGYHAARSEAEKAFGNSG 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDI 223
           + IE+ ++    +   +M D+  DV  +            K          P+ I   +I
Sbjct: 197 VYIEKLIENPHHIEFQIMADSHGDVVHLGERDCSMQRRNQK-----IIEETPSPIMTPEI 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +++        + +G  G    + L D  +   +++E+N 
Sbjct: 252 REKMGADCVRLAKEVGYVGAGTIECLMD-DNGNYYFMEMNT 291


>gi|262376375|ref|ZP_06069604.1| acetyl-CoA carboxylase, biotin carboxylase [Acinetobacter lwoffii
           SH145]
 gi|262308514|gb|EEY89648.1| acetyl-CoA carboxylase, biotin carboxylase [Acinetobacter lwoffii
           SH145]
          Length = 454

 Score = 75.9 bits (186), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 30/199 (15%), Positives = 69/199 (34%), Gaps = 19/199 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     I+E     +         L  +K+ +   +   GVP  P    
Sbjct: 77  AIHPGYGFLAENAEFAEIVENSGFIFIGPRPEHIRLMGNKVSAIIAMKKAGVPTVPGCDH 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD----QSIPLDLLQSSSWNHGDQ 165
            + ++    +++  I  P ++K   GG   G+ +++      +S+      +  W   D 
Sbjct: 137 AVTIHNAMAEAKE-IGFPLIVKAASGGGGRGMRIVENVDTLLESVQAAQRDAEMWFGDDT 195

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDI 223
           + +E+++     +   V+ D +     +           L+          PA  +P   
Sbjct: 196 VYMERFLQKPRHVEVQVLADGNGHAIHLY-----DRDCSLQRRHQKVLEEAPAPNLPEQA 250

Query: 224 YKEVQRLAFLAHQAIGCRG 242
             ++      A + +  RG
Sbjct: 251 RADILEACVNACKLMQYRG 269


>gi|229076819|ref|ZP_04209729.1| Biotin carboxylase [Bacillus cereus Rock4-18]
 gi|228706308|gb|EEL58571.1| Biotin carboxylase [Bacillus cereus Rock4-18]
          Length = 445

 Score = 75.9 bits (186), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 80/220 (36%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       +   I +             K+ S+  + +  VPV P I  
Sbjct: 77  AIHPGYGLLSENPSFPIRCKEEGIVFIGPSEEIITKMGSKIESRIAMQAADVPVVPGITT 136

Query: 114 N----RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
           N       ++    I  P ++K   GG  +G+ +++ +Q++         ++ ++    +
Sbjct: 137 NIETAEEAIEIAKQIGYPLMLKASAGGGGIGMQLMETEQTLTKAFESNKTRAQNFFGNGE 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+Y+ D   +   ++ D   +   +   +        K             +     
Sbjct: 197 MYLERYIADAHHIEIQLLADTHGNTVYLWERECSVQRRNQK----VIEEAPSPFLDEGTR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K +  +A  A +A+G       +FL D      ++LE+N 
Sbjct: 253 KAMGEVAVQAAKALGYTNAGTVEFLVDDQKN-FYFLEMNT 291


>gi|229097075|ref|ZP_04228042.1| Biotin carboxylase [Bacillus cereus Rock3-29]
 gi|229103135|ref|ZP_04233822.1| Biotin carboxylase [Bacillus cereus Rock3-28]
 gi|229116037|ref|ZP_04245431.1| Biotin carboxylase [Bacillus cereus Rock1-3]
 gi|228667432|gb|EEL22880.1| Biotin carboxylase [Bacillus cereus Rock1-3]
 gi|228680324|gb|EEL34514.1| Biotin carboxylase [Bacillus cereus Rock3-28]
 gi|228686361|gb|EEL40272.1| Biotin carboxylase [Bacillus cereus Rock3-29]
          Length = 445

 Score = 75.9 bits (186), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 80/220 (36%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       +   I +             K+ S+  + +  VPV P I  
Sbjct: 77  AIHPGYGLLSENPSFPIRCKEEGIVFIGPSEEIITKMGSKIESRIAMQAADVPVVPGITT 136

Query: 114 N----RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
           N       ++    I  P ++K   GG  +G+ +++ +Q++         ++ ++    +
Sbjct: 137 NIETAEEAIEIAKQIGYPLMLKASAGGGGIGMQLMETEQTLTKAFESNKTRAQNFFGNGE 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+Y+ D   +   ++ D   +   +   +        K             +     
Sbjct: 197 MYLERYIADAHHIEIQLLADTHGNTVYLWERECSVQRRNQK----VIEEAPSPFLDEGTR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K +  +A  A +A+G       +FL D      ++LE+N 
Sbjct: 253 KAMGEVAVQAAKALGYTNAGTVEFLVDDQKN-FYFLEMNT 291


>gi|153952763|ref|YP_001393528.1| biotin carboxylase [Clostridium kluyveri DSM 555]
 gi|219853429|ref|YP_002470551.1| hypothetical protein CKR_0086 [Clostridium kluyveri NBRC 12016]
 gi|146345644|gb|EDK32180.1| AccC [Clostridium kluyveri DSM 555]
 gi|219567153|dbj|BAH05137.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 447

 Score = 75.9 bits (186), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 80/220 (36%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  FG   E+     I E   I +   G        +K  ++ ++S  GV + P    
Sbjct: 77  AIHPGFGFLSENSKFAKICEECNITFIGPGAECIENMGNKSNARSIMSKAGVSIIPGSKK 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGDQ 165
            I  N   ++    I  P +IK   GG   GI +++ +  +         ++      D 
Sbjct: 137 AINSNEELLEVARNIGYPVMIKASAGGGGRGIRIVRSEDDLIRSYENAKAEARIAFGDDT 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E++++    +   ++GD   ++  +            K        V    I  ++ 
Sbjct: 197 IYLEKFIESPKHIEIQILGDNFGNIVYLGERDCSMQRRNQKLLEEAPGKV----ITDELR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +  +A  A +A+        +FL D      +++E+N 
Sbjct: 253 ISMGEMAVRAAKAVRYNNAGTVEFLLDK-DGNYYFMEMNT 291


>gi|163940315|ref|YP_001645199.1| acetyl-CoA carboxylase biotin carboxylase subunit [Bacillus
           weihenstephanensis KBAB4]
 gi|163862512|gb|ABY43571.1| Carbamoyl-phosphate synthase L chain ATP-binding [Bacillus
           weihenstephanensis KBAB4]
          Length = 445

 Score = 75.9 bits (186), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 80/220 (36%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       +   I +             K+ S+  + +  VPV P I  
Sbjct: 77  AIHPGYGLLSENPSFPIRCKEEGIVFIGPSEEIITKMGSKIESRIAMQAADVPVVPGITT 136

Query: 114 N----RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
           N       ++    I  P ++K   GG  +G+ +++ +Q++         ++ ++    +
Sbjct: 137 NIETAEEAIEIAKQIGYPLMLKASAGGGGIGMQLMETEQTLTKAFESNKTRAQNFFGNGE 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+Y+ D   +   ++ D   +   +   +        K             +     
Sbjct: 197 MYLERYIADAHHIEIQLLADTHGNTVYLWERECSVQRRNQK----VIEEAPSPFLDEGTR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K +  +A  A +A+G       +FL D      ++LE+N 
Sbjct: 253 KAMGEVAVQAAKALGYTNAGTVEFLVDDQKN-FYFLEMNT 291


>gi|148261710|ref|YP_001235837.1| biotin carboxylation domain-containing protein [Acidiphilium
           cryptum JF-5]
 gi|146403391|gb|ABQ31918.1| urea carboxylase precursor [Acidiphilium cryptum JF-5]
          Length = 1162

 Score = 75.9 bits (186), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 38/256 (14%), Positives = 82/256 (32%), Gaps = 30/256 (11%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E       L    I +             K  ++ +    GVP+ P   +
Sbjct: 82  AVHPGYGFLAERADFAEALADAGIVFIGPRPEQMRAFGLKHTARALARDAGVPLLPGSGL 141

Query: 114 N---RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQL 166
                   ++   I  P ++K   GG  +G+     +  +          + +      L
Sbjct: 142 LGSVEAAAEAAAAIGYPVMLKSTAGGGGIGMAPCADEAELRARFAGISRLAQANFGEAAL 201

Query: 167 LIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
            +E++V     +   + GD +  V  +            K          P  IP  +  
Sbjct: 202 YLEKFVTAARHVEVQIFGDGAGGVIALGARDCSLQRRNQK----VVEETPPPGIPAPVLA 257

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285
            ++  A    +++        +F++D  ++  ++LE+N             +    G + 
Sbjct: 258 AMEDAACGLARSVRYLSAGTVEFIYDAAAQTFYFLEVNT-----------RLQVEHGVTE 306

Query: 286 R----ELLLWMVEDAS 297
                +L+ WMV  A+
Sbjct: 307 EVFGIDLVEWMVRAAA 322


>gi|312135186|ref|YP_004002524.1| carbamoyl-phosphate synthase, large subunit [Caldicellulosiruptor
           owensensis OL]
 gi|311775237|gb|ADQ04724.1| carbamoyl-phosphate synthase, large subunit [Caldicellulosiruptor
           owensensis OL]
          Length = 1075

 Score = 75.9 bits (186), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 51/306 (16%), Positives = 110/306 (35%), Gaps = 39/306 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLV 68
           S  +   AL   G K   I         D D S  L    L  +   N++     E  +V
Sbjct: 578 SVHSVY-ALSKLGIKSVIINNNPETVSTDFDTSDILFFEPLTKEDVLNIIETVKAEGVIV 636

Query: 69  Q----------AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI--LVNRF 116
           Q            L    I    +      ++ D+ R  ++++   +           + 
Sbjct: 637 QFGGQTAIKLSQQLAKEGIKIFGTSAEGIDIAEDRERFDKILNKLNIKRPQGFTCYTLQE 696

Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
            ++  + +  P +++P       G+ +   D  I   L  + + N    +LI++Y+ G E
Sbjct: 697 ALEIANSLGYPVLVRPSYVLGGQGMKIAFDDDDIVEMLSYAKNLN-DHPILIDKYIVGKE 755

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAH 235
           +    + D      +I +P    +       S +S  + PA+ I   I   +    +   
Sbjct: 756 IEVDAISDGE----DILIPGIMEHIERAGVHSGDSISLYPARNISKYIEDRIVEYTYKIA 811

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEMAAYA----GYSFR 286
           + + C+G+    F+    + +++ +E+N       P ++ V+  P +        GY  +
Sbjct: 812 KELECKGLINVQFIV--QNEELYVIEVNPRGSRTVPFLSKVTGVPMVELATMVSLGYRLK 869

Query: 287 ELLLWM 292
           +L+  +
Sbjct: 870 DLVNTV 875



 Score = 75.5 bits (185), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 52/289 (17%), Positives = 105/289 (36%), Gaps = 39/289 (13%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQID-------VDRS--------------VGLV 45
           G ++E + S   G     AL++ G +V  I+        D++              +  +
Sbjct: 21  GQAAEFDYS---GSQACKALKEEGIEVVLINSNPATIMTDKTMADSIYIEPITCEIIEKI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   + D     L    G +  V+     IL+   +    + I A   + D++  K+++ 
Sbjct: 78  IQKERVDAILPTLGKQTGLNTAVELYKSGILDKYNVKVIGTNIEAIEFAEDRLLFKELMI 137

Query: 102 SCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G PV PS +VN     +     I  P +I+P       G  +   ++       +  S
Sbjct: 138 KIGEPVVPSDVVNCVEDGVAFAKKIGFPVIIRPAYTLGGTGGGIANNEEEFVEIARKGLS 197

Query: 160 WNHGDQLLIEQYVDG---IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216
           ++   Q+L+E+ + G   IE       +  L              +     + +S  V P
Sbjct: 198 YSPVHQILVEKSIKGWKEIEYEVMRDSNGCLITVCNMENIDPVGIH-----TGDSIVVAP 252

Query: 217 AK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           ++ +    Y+ ++  A     A+   G     F  +P S +   +E+N 
Sbjct: 253 SQTLSDKEYQMLRTSALKIIDALKIEGGCNVQFALNPESFEYAVIEVNP 301


>gi|304391266|ref|ZP_07373210.1| propionyl-CoA carboxylase alpha chain [Ahrensia sp. R2A130]
 gi|303296622|gb|EFL90978.1| propionyl-CoA carboxylase alpha chain [Ahrensia sp. R2A130]
          Length = 667

 Score = 75.9 bits (186), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 76/221 (34%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+ L    L+   I +    + A     DK+ SK++ S  GV   P    
Sbjct: 77  AVHPGYGFLSENPLFAKALDEAGIAFIGPPVGAIEAMGDKITSKKLASEAGVSTVPGHMD 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGD 164
            I      +     I  P +IK   GG   G+ +   D              ++S+   D
Sbjct: 137 LIADAEEAVKISGQIGYPVMIKASAGGGGKGMRIAWNDDDAREGFQSSKNEAANSFG-DD 195

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           ++ IE++V     +   V+ D+  +   +   +        K             +    
Sbjct: 196 RIFIEKFVTQPRHIEIQVLADSHGNCIYLGERECSIQRRNQK----VIEEAPSPFLDEKT 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            K +   A    QA+        +F+ D   R  ++LE+N 
Sbjct: 252 RKAMGEQAVALSQAVDYASAGTVEFIVDG-DRNFYFLEMNT 291


>gi|229170664|ref|ZP_04298308.1| Biotin carboxylase [Bacillus cereus AH621]
 gi|228612824|gb|EEK70005.1| Biotin carboxylase [Bacillus cereus AH621]
          Length = 445

 Score = 75.9 bits (186), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 80/220 (36%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       +   I +             K+ S+  + +  VPV P I  
Sbjct: 77  AIHPGYGLLSENPSFPIRCKEEGIVFIGPSEEIITKMGSKIESRIAMQAADVPVVPGITT 136

Query: 114 N----RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
           N       ++    I  P ++K   GG  +G+ +++ +Q++         ++ ++    +
Sbjct: 137 NIETAEEAIEIAKQIGYPLMLKASAGGGGIGMQLMETEQTLTKAFESNKTRAQNFFGNGE 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+Y+ D   +   ++ D   +   +   +        K             +     
Sbjct: 197 MYLERYIADAHHIEIQLLADTHGNTVYLWERECSVQRRNQK----VIEEAPSPFLDEGTR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K +  +A  A +A+G       +FL D      ++LE+N 
Sbjct: 253 KAMGEVAVQAAKALGYTNAGTVEFLVDDQKN-FYFLEMNT 291


>gi|225848352|ref|YP_002728515.1| acetyl-CoA carboxylase, biotin carboxylase subunit
           [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225644559|gb|ACN99609.1| acetyl-CoA carboxylase, biotin carboxylase subunit
           [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 472

 Score = 75.9 bits (186), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 80/221 (36%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     + E   I +        A+  DK RSK+++   GVP  P    
Sbjct: 76  AIHPGYGFLAENEEFAKMCEDNGITFIGPSSEVIAMMGDKARSKEIMKKFGVPTVPGSDG 135

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGDQ 165
            +      +     I  P ++K   GG   GI +   ++ +         ++        
Sbjct: 136 VLKSVEEAVALAKEIGYPVLLKASAGGGGRGIRICNDEEELKRNYEQAYKEAEKAFGRGD 195

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDI 223
           LL+E+Y+ +   +   ++GD   +V  +            K        + P+  +  + 
Sbjct: 196 LLLEKYIQNPKHIEFQILGDKYGNVIHLGERDCSIQRRNQKL-----VEIAPSLVLDEEK 250

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            ++   +   A + IG       +F    L   ++++E+N 
Sbjct: 251 RRKYGEICANAAKNIGYYSAGTMEF-VSDLEGNIYFIEMNT 290


>gi|229161449|ref|ZP_04289430.1| Biotin carboxylase [Bacillus cereus R309803]
 gi|228621986|gb|EEK78831.1| Biotin carboxylase [Bacillus cereus R309803]
          Length = 445

 Score = 75.9 bits (186), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 80/220 (36%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       +   I +             K+ S+  + +  VPV P I  
Sbjct: 77  AIHPGYGLLSENPSFPIRCKEEGIVFIGPSEEIITKMGSKIESRIAMQAADVPVVPGITT 136

Query: 114 N----RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
           N       ++    I  P ++K   GG  +G+ +++ +Q++         ++ ++    +
Sbjct: 137 NIETAEEAIEIAKQIGYPLMLKASAGGGGIGMQLMETEQTLTKAFESNKTRAQNFFGNGE 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+Y+ D   +   ++ D   +   +   +        K             +     
Sbjct: 197 MYLERYIADAHHIEIQLLADTHGNTVYLWERECSVQRRNQK----VIEEAPSPFLDEGTR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K +  +A  A +A+G       +FL D      ++LE+N 
Sbjct: 253 KAMGEVAVQAAKALGYTNAGTVEFLVDDQKN-FYFLEMNT 291


>gi|33592551|ref|NP_880195.1| carbamoyl phosphate synthase large subunit [Bordetella pertussis
           Tohama I]
 gi|33572197|emb|CAE41743.1| carbamoyl-phosphate synthase large chain [Bordetella pertussis
           Tohama I]
 gi|332381969|gb|AEE66816.1| carbamoyl phosphate synthase large subunit [Bordetella pertussis
           CS]
          Length = 1080

 Score = 75.9 bits (186), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 44/298 (14%), Positives = 106/298 (35%), Gaps = 35/298 (11%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ------ 69
           AL + G++   +         D D S  L    L  +    ++H       +VQ      
Sbjct: 589 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVHKENPVGMIVQYGGQTP 648

Query: 70  ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL-- 123
                 LE   +    +   +  ++ D+ R +++++  G+   P+           H   
Sbjct: 649 LKLARALEANGVSIIGTSPESIDVAEDRERFQKLLNKLGLRQPPNRTARTEAEALAHASE 708

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVM 182
           I  P V++P        + ++ + Q +   + ++   ++   +L+++++ D  E+    +
Sbjct: 709 IGYPLVVRPSYVLGGRAMEIVHEQQDLERYMREAVKVSNDSPVLLDRFLNDATEVDVDCL 768

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D         +   +       +S  ++  + P  +  ++  E++R   +  +A+   G
Sbjct: 769 ADGQTVFIGGVMEHIEQAGV---HSGDSACSLPPYSLSAEVIAEIKRQTTMMAKALNVSG 825

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           +    F        V+ LE+N +   T     P ++   G      L  +   A   R
Sbjct: 826 LMNVQFAI--QGGDVYVLEVNPRASRT----VPYVSKATGLQ----LAKIAARAMAGR 873



 Score = 59.4 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 46/285 (16%), Positives = 99/285 (34%), Gaps = 42/285 (14%)

Query: 18  SGKACASALEDAGF-------------------KVSQIDVD--RSVGLVLAHLKPDLAFN 56
           SG     AL+  G+                    V+ I+    ++V  ++   KPD    
Sbjct: 29  SGAQACKALKAEGYRTILVNSNPATIMTDPETADVTYIEPITWQAVEKIIEREKPDALLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      +L+   +    +   A   + D+ + KQ ++  G+    S +
Sbjct: 89  TMGGQTALNCALDLAHHGVLKKHNVELIGANEHAIEKAEDRQKFKQAMTDIGLESAKSGV 148

Query: 113 VNRFTMDSQ---------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
            +      +              P VI+P       G  +    +   +   +    +  
Sbjct: 149 AHSMDEAWEVQRRIAADIGTAGFPVVIRPSFTLGGSGGGIAYNAEEFEVICRRGLEASPT 208

Query: 164 DQLLIEQYVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IP 220
            +LLIE+ + G  E    V+ D + + +   ++   D           +S  V PA+ + 
Sbjct: 209 KELLIEESLLGWKEFEMEVVRDKADNCIIVCSIENLDPMGVHT----GDSITVAPAQTLT 264

Query: 221 LDIYKEVQRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
              Y+ ++  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 DKEYQIMRNASIAVLREIGVDTGGSNVQFAVNPQNGRMIVIEMNP 309


>gi|315658572|ref|ZP_07911443.1| pyruvate carboxylase [Staphylococcus lugdunensis M23590]
 gi|315496361|gb|EFU84685.1| pyruvate carboxylase [Staphylococcus lugdunensis M23590]
          Length = 1148

 Score = 75.9 bits (186), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 32/221 (14%), Positives = 76/221 (34%), Gaps = 20/221 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+           I +    +    +  DK++++    +  +PV P    
Sbjct: 80  AIHPGYGFLSENEHFAHRCHEEGIKFIGPHLDHLDMFGDKVKARTTAINADLPVIPGTDG 139

Query: 114 NRFTMDSQHLI----SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
                +S          P +IK   GG   G+ ++++   +     ++ S         +
Sbjct: 140 PIENFESARAFADEAGYPLMIKATSGGGGKGMRIVREANELEDAFHRAKSEAEKSFGNSE 199

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDI 223
           + IE+Y+D    +   V+GD   ++  +           ++        V P   +  ++
Sbjct: 200 VYIERYIDNPKHIEVQVIGDEFGNIVHLYE-----RDCSVQRRHQKVVEVAPSVGLSKEL 254

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +++   A      I        +FL        +++E+N 
Sbjct: 255 REKICNAALQLMTKIKYVNAGTVEFLV--SGEDFYFIEVNP 293


>gi|298385479|ref|ZP_06995037.1| phosphoribosylglycinamide formyltransferase 2 [Bacteroides sp.
           1_1_14]
 gi|298261620|gb|EFI04486.1| phosphoribosylglycinamide formyltransferase 2 [Bacteroides sp.
           1_1_14]
          Length = 388

 Score = 75.9 bits (186), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 47/255 (18%), Positives = 86/255 (33%), Gaps = 36/255 (14%)

Query: 31  FKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
           F+V  +    ++  V+    PD+    +     E         L +       ++ SA +
Sbjct: 45  FEVFDMLDGEALERVVEKHHPDIIVPEIEAIRTE--------RLYDFEKEGIQVVPSARA 96

Query: 91  MD-----KMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYVIKPLKGGSSLGIIV 143
           ++     K          G+               ++   I  P V+KPL   S  G  +
Sbjct: 97  VNFTMNRKAIRDLAAKELGLKTANYFYAKTLDELKEAAAKIGFPCVVKPLMSSSGKGQSL 156

Query: 144 IKKDQSIPLDLLQSSSWNHGD--QLLIEQYVDGIE----LTCGVMGDASLDVTEIA-VPK 196
           +K    +        S + GD  +L+IE+++        LT       +L    I  V K
Sbjct: 157 VKGADELEHAWEYGCSGSRGDIRELIIEEFIKFDSEITLLTVTQKNGPTLFCPPIGHVQK 216

Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256
              Y               PA I     KE + +A    +A+   G+   +F     +  
Sbjct: 217 GGDY----------RESFQPAHIDPAHLKEAEEMAEKVTRALTGAGLWGVEFFLSHENG- 265

Query: 257 VFWLEINVQP---GM 268
           V++ E++ +P   GM
Sbjct: 266 VYFSELSPRPHDTGM 280


>gi|332286766|ref|YP_004418677.1| acetyl-CoA carboxylase biotin carboxylase subunit [Pusillimonas sp.
           T7-7]
 gi|330430719|gb|AEC22053.1| acetyl-CoA carboxylase biotin carboxylase subunit [Pusillimonas sp.
           T7-7]
          Length = 448

 Score = 75.9 bits (186), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 34/222 (15%), Positives = 82/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +      +  +  DK+ +KQ +   GVPV P    
Sbjct: 77  AIHPGYGFLAENADFAERVEKSGFVFIGPRPESIRIMGDKVCAKQAMIEAGVPVVPGSEG 136

Query: 112 LVNRFTMD---SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGD 164
            +     +       +  P +IK   GG   G+ V+  + ++   +     ++ +  +  
Sbjct: 137 ALPEDPDEIFRIAREVGYPVIIKAAGGGGGRGMRVVYTEAALQNAVAMTRNEAGAAFNNP 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
           ++ +E++++    +   ++ D   +   +            K          PA  I   
Sbjct: 197 EVYMEKFLENPRHIEIQILADGVRNAIWLGERDCSMQRRHQK-----VIEEAPAPGIARR 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + + +      A + +  RG    +FL+   + + F++E+N 
Sbjct: 252 LIERIGERCADACRKMNYRGAGTFEFLY--ENGEFFFIEMNT 291


>gi|296120606|ref|YP_003628384.1| carbamoyl-phosphate synthase, large subunit [Planctomyces
           limnophilus DSM 3776]
 gi|296012946|gb|ADG66185.1| carbamoyl-phosphate synthase, large subunit [Planctomyces
           limnophilus DSM 3776]
          Length = 1090

 Score = 75.9 bits (186), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 52/278 (18%), Positives = 102/278 (36%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVDRS------------VGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D + +            V  ++ + +PD    
Sbjct: 29  SGTQACKALRECGYEVVLVNSNPATIMTDPNTADSTYIEPIHWQYVAKIIENERPDAILP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G  G +  +    + ILE        +       + D+   K+ +   G+ VC S +
Sbjct: 89  TLGGQTGLNTGMELFRRGILEKYNCEMIGARADVIEKAEDRQLFKEAMQKIGLDVCRSRI 148

Query: 113 VNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           VN      D    I  P +I+       +G  +    +     + +    +  +++L+E+
Sbjct: 149 VNSMEEARDVLKEIGLPIIIRASFTLGGMGGGIAYNREEFEEKVRKGIELSPINEVLLEE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            + G  E    VM D + +V  I   ++ D           +S  V PA+ +    Y+ +
Sbjct: 209 SIIGWKEYEMEVMRDKADNVVIICSIENLDPMGVHT----GDSITVAPAQTLTDREYQRM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +       + IG   G S   F   P + ++  +E+N 
Sbjct: 265 RDATIAVMREIGVETGGSNVQFAIHPQTGRMVVVEMNP 302



 Score = 64.0 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 43/266 (16%), Positives = 94/266 (35%), Gaps = 31/266 (11%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAI---- 71
           AL + G +   +         D D S  L    L  +   N+       DG++       
Sbjct: 594 ALRELGIESVMVNSNPETVSTDYDTSDLLFFEPLTTEDVLNICD-RLQPDGVIVQFGGQT 652

Query: 72  -------LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ--H 122
                  LE   +    +       + D+   K ++   G+   P+ +        Q   
Sbjct: 653 PLNLARGLEQAGVKIIGTSPSMIDAAEDREIFKGILDKLGLHQPPNGMATDAARAVQIAS 712

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGV 181
            I  P +++P        + +   ++ +   + ++ + +    +LI++++ D +E+    
Sbjct: 713 EIGYPVLVRPSFVLGGRAMQICYDERMVREYMTEAVNVSPDRPVLIDKFLEDAVEVDVDA 772

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGC 240
           + D  + V    +   +    E    S +S  VLP   +P  I  E++   +   + +  
Sbjct: 773 ISDGEITVVGGVMEHIE----EAGVHSGDSACVLPPYSLPDAIVDEIKTATYALAKELQV 828

Query: 241 RGISRSDFLFDPLSRK--VFWLEINV 264
           RG+    F       +  V+ LE+N 
Sbjct: 829 RGLMNIQFAVKHQGGEPVVYVLEVNP 854


>gi|222106837|ref|YP_002547628.1| acetyl-CoA carboxylase biotin carboxylase [Agrobacterium vitis S4]
 gi|221738016|gb|ACM38912.1| acetyl-CoA carboxylase biotin carboxylase [Agrobacterium vitis S4]
          Length = 462

 Score = 75.9 bits (186), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 81/220 (36%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      +    + +      A +L  DK+ +++V    GVP  P    
Sbjct: 78  AVHPGYGFLSENAAFAKAVTDAGLIFIGPSHEAISLLGDKVEARKVAMQAGVPTVPGSNG 137

Query: 114 NRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGDQ 165
               +D+       I  P +IK   GG   GI + +  +      P    ++ +      
Sbjct: 138 RVDDLDAGRAIVETIGFPVMIKAAAGGGGRGIRIAETMEDFERHFPQASSEALAAFGDGG 197

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           L IE+ +     +   ++GD   +       +        K            ++P D+ 
Sbjct: 198 LYIEKVITRARHVEVQILGDGE-NAIHCFERECSLQRRRQK----VWEEGPSVRLPDDVR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K +   A    +++  RG    ++L+D  S + +++E+N 
Sbjct: 253 KALCDSAVALARSVHYRGAGTVEYLYDEQSGEFYFIEVNT 292


>gi|313885063|ref|ZP_07818815.1| pyruvate carboxylase [Eremococcus coleocola ACS-139-V-Col8]
 gi|312619754|gb|EFR31191.1| pyruvate carboxylase [Eremococcus coleocola ACS-139-V-Col8]
          Length = 1164

 Score = 75.9 bits (186), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 38/261 (14%), Positives = 89/261 (34%), Gaps = 29/261 (11%)

Query: 25  ALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFN--------VLHGNFG---EDGLVQAILE 73
           AL       S + +   +G + A+L  +   N         +H  +G   E+        
Sbjct: 41  ALHRQKADYSYL-IGEDLGPIEAYLDIEGIINLAKEKGVDAIHPGYGFLSENQEFAQRCA 99

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYV 129
              I +    +    +  +K ++++   +  +PV P     +               P +
Sbjct: 100 EEGIIFVGPQVKHLQMFGNKTQARETALAADLPVIPGSQGGVASLSEVKSFVQEHGYPIM 159

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQLLIEQYVD-GIELTCGVMGD 184
           IK + GG   G+ ++++   +     ++ S        D + +E+YV+    +   ++GD
Sbjct: 160 IKAVNGGGGKGMRIVRQADELEQAYDRAKSEAKTSFGDDSIYVERYVENPKHIEVQIIGD 219

Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGI 243
              ++  +            K        + P+  +   +  ++ R A      IG    
Sbjct: 220 QHGNLVHLFERDCSIQRRHQK-----VVEIAPSFNLSPSMRDKLTRAALQLMNHIGYENA 274

Query: 244 SRSDFLFDPLSRKVFWLEINV 264
              +FL        +++E+N 
Sbjct: 275 GTVEFLV--AGDDYYFIEVNP 293


>gi|221638604|ref|YP_002524866.1| Propionyl-CoA carboxylase subunit alpha [Rhodobacter sphaeroides
           KD131]
 gi|221159385|gb|ACM00365.1| Propionyl-CoA carboxylase alpha subunit [Rhodobacter sphaeroides
           KD131]
          Length = 667

 Score = 75.9 bits (186), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 74/220 (33%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E     A LE   + +      A     DK+ SK++    GV   P  + 
Sbjct: 78  AVHPGYGFLSERMDFAAALEAAGVVFIGPPSGAIEAMGDKITSKKLAKEAGVSTVPGYMG 137

Query: 114 NRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
                D      + I  P +IK   GG   G+ +   +  +         ++++    D+
Sbjct: 138 LIADADEAVKISNEIGYPVMIKASAGGGGKGMRIAWSEAEVKEGFESSKNEAANSFGDDR 197

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE++V     +   V+ D   +   +   +        K             +     
Sbjct: 198 IFIEKFVTQPRHIEIQVLADKHGNCVYLHERECSIQRRNQK----VIEEAPSPFLDEATR 253

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K +   A    +A+G       +F+ D      ++LE+N 
Sbjct: 254 KAMGEQACALAKAVGYASAGTVEFIVDGQKN-FYFLEMNT 292


>gi|152987758|ref|YP_001345992.1| acetyl-CoA carboxylase biotin carboxylase subunit [Pseudomonas
           aeruginosa PA7]
 gi|150962916|gb|ABR84941.1| probable acyl-CoA carboxylase subunit [Pseudomonas aeruginosa PA7]
          Length = 457

 Score = 75.9 bits (186), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 80/220 (36%), Gaps = 19/220 (8%)

Query: 58  LHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
           +H  +G   E+      ++   + +            DK  +++   + GVPV P     
Sbjct: 81  IHPGYGFLSENPAFAEAVQAAGLVFVGPDAQTIRRMGDKAEARRTAMAAGVPVVPGSPGE 140

Query: 115 RFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGDQL 166
              +D+       +  P ++K   GG   GI + +    +    P+   ++ +      +
Sbjct: 141 LDDLDAALACAEEVGYPLLVKASAGGGGRGIRIARDADELRREFPIAQREAQAAFGSPAV 200

Query: 167 LIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIY 224
            +E+++     +   ++GD         V         L+          P A +     
Sbjct: 201 YLERFIRQARHIEVQILGDGE------RVVHLFERECSLQRRRQKVFEEAPSAALDGAQR 254

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +   A    Q++G RG    ++LFD  S + F++E+N 
Sbjct: 255 QALCESAVRLAQSLGYRGAGTLEYLFDAHSGEFFFIEMNT 294


>gi|254462392|ref|ZP_05075808.1| RimK-like ATP-grasp domain family [Rhodobacterales bacterium
           HTCC2083]
 gi|206678981|gb|EDZ43468.1| RimK-like ATP-grasp domain family [Rhodobacteraceae bacterium
           HTCC2083]
          Length = 676

 Score = 75.9 bits (186), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 74/221 (33%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      L    + +    + A     DK+ SK++     V   P  + 
Sbjct: 77  AVHPGYGFLSENSKFAEALAAEGVAFVGPPVGAIEKMGDKITSKKIAQDANVSTVPGYMG 136

Query: 114 NRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGD 164
                D      + +  P +IK   GG   G+ +   D              ++S+   D
Sbjct: 137 LIEDADEAVKISNEVGYPVMIKASAGGGGKGMRIAWNDDEAREGFQSSKNEAANSFG-DD 195

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           ++ IE+++     +   V+ D+  +   +   +      + K             +    
Sbjct: 196 RIFIEKFITQPRHIEIQVLCDSHGNGIYLGERECSIQRRQQK----VVEEAPSPFLDEAT 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            K +   A    QA+G       +F+ D      ++LE+N 
Sbjct: 252 RKAMGEQAVALAQAVGYASAGTVEFIVDGAKN-FYFLEMNT 291


>gi|118591992|ref|ZP_01549386.1| biotin carboxylase [Stappia aggregata IAM 12614]
 gi|118435288|gb|EAV41935.1| biotin carboxylase [Stappia aggregata IAM 12614]
          Length = 664

 Score = 75.9 bits (186), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 42/226 (18%), Positives = 80/226 (35%), Gaps = 24/226 (10%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      L+   I +      +      K  +K ++   GVPV P    
Sbjct: 77  AVHPGYGFLSENPDFVDALDKAGIAFIGPSASSIRAMGLKDAAKALMEKAGVPVVPGYHG 136

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS-----SSWNHGD 164
                D        I  P +IK   GG   G+  +   +     L  +     +S++   
Sbjct: 137 ENQDADFLKEQADRIGYPVLIKARAGGGGKGMRRVDDPKDFADALKGAQREGEASFD-DG 195

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
           ++LIE+Y+     +   V GD+  +               L+          PA  +P +
Sbjct: 196 RVLIEKYLTKPRHIEIQVFGDSHGNAV-----HLFERDCSLQRRHQKVIEEAPAPGMPEE 250

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR----KVFWLEINV 264
           + + +   A  A +AI   G    +F+ D        + +++E+N 
Sbjct: 251 MRQAMGDAAVTAAKAIDYSGAGTIEFIADVSEGLHSDRFYFMEMNT 296


>gi|317153390|ref|YP_004121438.1| carbamoyl-phosphate synthase L chain ATP-binding protein
           [Desulfovibrio aespoeensis Aspo-2]
 gi|316943641|gb|ADU62692.1| Carbamoyl-phosphate synthase L chain ATP-binding protein
           [Desulfovibrio aespoeensis Aspo-2]
          Length = 1233

 Score = 75.9 bits (186), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 36/222 (16%), Positives = 77/222 (34%), Gaps = 20/222 (9%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---S 110
            +H   G   ED    A  E   + +         +  +K+  +++    GVPV P    
Sbjct: 89  AIHPGWGFGAEDDSFPAKCEKAGLLFIGPRQEPMRILGNKVAVRKLAIELGVPVVPGSDG 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQL 166
            +      +    I  P ++K   GG   GI  + KD  +     ++S+         +L
Sbjct: 149 AVSIPEAREITKKIGFPVMLKAEGGGGGRGIYEVYKDSELENAFAKASALAQASFGNPRL 208

Query: 167 LIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP---AKIPLD 222
            +E+ +     +   V+ D   +V        D     ++ +      + P    K    
Sbjct: 209 YVEKLLTSVRHIEIQVIADHYGNVFCF-----DERDCSVQRNHQKLIEITPSPWPKYSEA 263

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +  +++  +     A+G   ++  +FL        + +E+N 
Sbjct: 264 LRTQLKEYSKRLVSAVGYYSLATVEFLV-AADGTPYLIEVNT 304


>gi|258404752|ref|YP_003197494.1| phosphoribosylglycinamide synthetase [Desulfohalobium retbaense DSM
           5692]
 gi|257796979|gb|ACV67916.1| phosphoribosylglycinamide synthetase [Desulfohalobium retbaense DSM
           5692]
          Length = 410

 Score = 75.9 bits (186), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 41/202 (20%), Positives = 75/202 (37%), Gaps = 12/202 (5%)

Query: 67  LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLI 124
            +  + E LE+P     +     + +K++ + +    GV          F         I
Sbjct: 84  TIAGVAEALELPGITPTVAE--NATNKVKRQLLFKENGVSSPQFSFACGFDEACREAQKI 141

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG--VM 182
             P V+KP     S G+  +   + +   L + SS +   Q LIE+Y+ G E +    V+
Sbjct: 142 GWPVVVKPADSAGSRGVQKVDSPEDMKSALDEISSVSTLPQCLIEEYLSGTEHSIEGIVL 201

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
               +         +  ++Y   +     T   P+ +  +  KEV+  A  A  A+G   
Sbjct: 202 EGRVIWAGLSDRNYAHKHAYPPYFLEDGDTM--PSNLGPETIKEVKAEATKAVHALGI-D 258

Query: 243 ISRS--DFLFDPLSRKVFWLEI 262
                 D + DP    +  LE+
Sbjct: 259 WGPVKGDIIIDPQKG-IRVLEM 279


>gi|331268241|ref|YP_004394733.1| acetyl-CoA carboxylase, biotin carboxylase [Clostridium botulinum
           BKT015925]
 gi|329124791|gb|AEB74736.1| acetyl-CoA carboxylase, biotin carboxylase [Clostridium botulinum
           BKT015925]
          Length = 450

 Score = 75.9 bits (186), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 33/220 (15%), Positives = 82/220 (37%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  FG   E+     +     I +    I       +K ++++++    VP+ P    
Sbjct: 80  AIHPGFGFLSENSKFAEMCNDCNIVFIGPDIDTMNNMGNKSKAREIMLKAQVPIVPGTEG 139

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGDQ 165
            +   +  +     I  P +IK   GG   GI +++ ++ +         ++        
Sbjct: 140 DVDTVKDALKEAERIGYPVMIKAAAGGGGRGIRIVRTNEDLGKMFETAKREAEVAFGDGS 199

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E++V+    +   ++GD   +V  +            K             +  ++ 
Sbjct: 200 MYMEKFVENPRHVEFQILGDNYGNVVHLGERDCSIQRRNQKVL----EETPCPIMTEELR 255

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +++  +A  A +A+  +G    +FL D      +++E+N 
Sbjct: 256 EKMGSVAVRAAKAVKYKGAGTIEFLLDNK-GDFYFMEMNT 294


>gi|193706855|ref|XP_001948468.1| PREDICTED: methylcrotonoyl-CoA carboxylase subunit alpha,
           mitochondrial-like isoform 1 [Acyrthosiphon pisum]
          Length = 700

 Score = 75.9 bits (186), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 86/221 (38%), Gaps = 18/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       +  ++ +      A      K +SK+++S  GVPV      
Sbjct: 91  AIHPGYGFLSENASFAQYCQSNDLIFIGPPPNAIESMGIKSKSKEIMSEAGVPVIEGYHG 150

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
                D      + I  P +IK +KGG   G+ ++ K+     +L+ +   +      D 
Sbjct: 151 KDQNSDFLQHEANKIGYPVMIKAIKGGGGKGMKIVSKESEFFENLMSAKRESLSSFGDDS 210

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDI 223
           +LIE+Y+     +   V  D   +   +           ++          PA ++   +
Sbjct: 211 VLIEKYIQQPRHVEVQVFADQHKNCVYL-----FERDCSVQRRHQKVMEEAPAPRLSESL 265

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +   A  A +A+G  G    +F+FD  +   +++E+N 
Sbjct: 266 RQHLGETAVRAAKAVGYEGAGTVEFIFDNTTNMFYFMEMNT 306


>gi|225159230|ref|ZP_03725532.1| carbamoyl-phosphate synthase, large subunit [Opitutaceae bacterium
           TAV2]
 gi|224802177|gb|EEG20447.1| carbamoyl-phosphate synthase, large subunit [Opitutaceae bacterium
           TAV2]
          Length = 1075

 Score = 75.9 bits (186), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 53/281 (18%), Positives = 110/281 (39%), Gaps = 42/281 (14%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL   G+++  ++ + +                     +  ++A  +PD    
Sbjct: 29  SGTQACKALRACGYQIVLVNSNPATIMTDPVMADATYIEPLNVARLEQIIAKERPDALLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G  G +  ++     IL+   +      + A     D+   K+ + + G+ +  S +
Sbjct: 89  NLGGQTGLNLSLELSKKGILQKYGVEVIGVNLDAIERGEDREIFKETMRALGIGLPDSRI 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           V+       +   ++ P V++P       G  ++     +   + +  S +   Q LIEQ
Sbjct: 149 VHTVEEAELAAAELNYPVVVRPAYTMGGTGGGLVYNIDELRTTVARGLSLSMTTQCLIEQ 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQ 228
            + G  EL   V+ DAS  +  +   ++          + +S    P   IP D+ K++Q
Sbjct: 209 SILGWEELEVEVVRDASGKMITVCFIENVDAVGVH---TGDSFCTAPMLTIPADVQKQLQ 265

Query: 229 RLAFLAHQAIGCRG-----ISRSDFLFDPLSRKVFWLEINV 264
            +A+   ++IG  G     ++R     DP + ++  +EIN 
Sbjct: 266 EIAYKVVESIGVIGGTNVQLAR-----DPATGRIVIIEINP 301



 Score = 47.0 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/196 (13%), Positives = 70/196 (35%), Gaps = 8/196 (4%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           L    +    + I     + D+   +Q++    +P+  S + +     +   + I  P +
Sbjct: 654 LAANGVRILGTSIDTIDTAEDRDLFRQMMERLDIPMPESGMASTIDEAISVANRIGYPIM 713

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           I+P       G+ +I  +  +   + ++   +    LL+++++   +E     + D    
Sbjct: 714 IRPSFILGGRGMEIIYDEDMLREYVAKAIDVSPERPLLLDRFLQSALECEADALADGKDV 773

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                +   +       +S  ++  + P  IP      +        Q +   G+   + 
Sbjct: 774 FIPAVMEHIELAGV---HSGDSACVIPPVTIPQKHLDTINAYTRKIAQELKVVGL--MNM 828

Query: 249 LFDPLSRKVFWLEINV 264
            +   + KV+ LE N 
Sbjct: 829 QYAIENDKVYVLEANP 844


>gi|260430982|ref|ZP_05784953.1| methylcrotonoyl-CoA carboxylase subunit alpha [Silicibacter
           lacuscaerulensis ITI-1157]
 gi|260414810|gb|EEX08069.1| methylcrotonoyl-CoA carboxylase subunit alpha [Silicibacter
           lacuscaerulensis ITI-1157]
          Length = 681

 Score = 75.9 bits (186), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 73/221 (33%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      LE   + +      A     DK+ SK++     V   P  + 
Sbjct: 77  AVHPGYGFLSENAKFAEALEAEGVVFVGPPKGAIEAMGDKITSKKIAQEANVSTVPGYMG 136

Query: 114 NRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGD 164
                D        I  P +IK   GG   G+ +   D+             ++S+   D
Sbjct: 137 LIEDADEAVKISQQIGYPVMIKASAGGGGKGMRIAWNDEEAREGFQSSKNEAANSFG-DD 195

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           ++ IE++V     +   V+ D   +   +   +        K             +    
Sbjct: 196 RIFIEKFVTQPRHIEIQVLCDTHGNGIYLGERECSIQRRNQK----VVEEAPSPFLDEAT 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +   A    +A+G       +F+ D   +  ++LE+N 
Sbjct: 252 RRAMGEQAVALAKAVGYASAGTVEFIVDG-DKNFYFLEMNT 291


>gi|217961432|ref|YP_002340000.1| pyruvate carboxylase [Bacillus cereus AH187]
 gi|229140675|ref|ZP_04269223.1| Pyruvate carboxylase [Bacillus cereus BDRD-ST26]
 gi|217065736|gb|ACJ79986.1| pyruvate carboxylase [Bacillus cereus AH187]
 gi|228642747|gb|EEK99030.1| Pyruvate carboxylase [Bacillus cereus BDRD-ST26]
          Length = 1148

 Score = 75.9 bits (186), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 31/243 (12%), Positives = 82/243 (33%), Gaps = 21/243 (8%)

Query: 35  QIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSM 91
            ID    +  ++   K +   + +H  +G   E+       E   I +         +  
Sbjct: 62  PIDAYLDIEGIIEIAKSNHV-DAIHPGYGFLSENIQFAKRCEEEGIIFIGPKSKHLDMFG 120

Query: 92  DKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147
           DK++++       +PV P     +               P +IK   GG   G+ +++  
Sbjct: 121 DKVKARTQAQLAQIPVIPGSDGPVDSLEEVGKFAEKYDYPIIIKASLGGGGRGMRIVRTS 180

Query: 148 QSIPL----DLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSY 202
           + +         ++ +    D++ +E++V+    +   ++ D   +V  +          
Sbjct: 181 EELRESYNRAKSEAKAAFGNDEVYVEKFVEKPKHIEVQILADEEGNVVHLYE-----RDC 235

Query: 203 ELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
            ++        + P   +  D+ + +   A    + +        +FL        +++E
Sbjct: 236 SVQRRHQKVVEIAPSVSLSDDLRQRICDAAVKLTKNVNYLNAGTVEFLV--KDDNFYFIE 293

Query: 262 INV 264
           +N 
Sbjct: 294 VNP 296


>gi|110803800|ref|YP_699823.1| carbamoyl phosphate synthase large subunit [Clostridium perfringens
           SM101]
 gi|123047123|sp|Q0SPY4|CARB_CLOPS RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|110684301|gb|ABG87671.1| carbamoyl-phosphate synthase, large subunit [Clostridium
           perfringens SM101]
          Length = 1067

 Score = 75.9 bits (186), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 33/232 (14%), Positives = 87/232 (37%), Gaps = 19/232 (8%)

Query: 67  LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV--PVCPSILVNRFTMDSQHLI 124
            +   L+   IP   +      L+ D+ +   ++    +  P    +      ++    +
Sbjct: 644 KLAKFLKEKNIPTLGTTSDQIDLAEDREQFDDLLERLNIARPKGKGVWSLEEGLEEARRL 703

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
             P +++P       G+ +   ++ +   L  +   +  + +LI++Y+ G E+    + D
Sbjct: 704 GFPILVRPSFVLGGQGMEITHDEEELTYYLTNAFEKDSKNPILIDKYLMGREIEVDAISD 763

Query: 185 AS---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGC 240
                +      + ++  +S        +S  + PA  I   I ++V         +IG 
Sbjct: 764 GEDVLVPGIMEHLERAGVHS-------GDSITMYPAQNISDKIKEDVLDYTKKLALSIGI 816

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +G+    F+      K++ +E+N +   T     P ++  +G    ++   +
Sbjct: 817 KGMINIQFI--EFEGKLYVIEVNPRASRT----VPYISKVSGVPIVDIATRI 862



 Score = 62.4 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 51/290 (17%), Positives = 107/290 (36%), Gaps = 41/290 (14%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQID-------VDRSVGL--------------V 45
           G ++E + S   G     AL++ G +V  ++        D+ +                V
Sbjct: 21  GQAAEFDYS---GTQACQALKEEGIEVVLVNSNPATIMTDKEIADKVYLEPLTVEFVEKV 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGL-------VQAILELLEIPYTHSGILASALSMDKMRSKQ 98
           +   +PD   ++L G  G+ GL        + IL+   +    + I +     D+   + 
Sbjct: 78  IEKERPD---SLLAGMGGQTGLNLAVELYEKGILDKYNVKVIGTSIESIKEGEDRELFRD 134

Query: 99  VVSSCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
           +++    PV  S ++      +     I  P +++P       G  +   ++ +   L  
Sbjct: 135 MMNRINQPVIQSEIITDLDSGIAFARKIGYPVIVRPAYTLGGTGGGIANNEEELIETLTS 194

Query: 157 SSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215
               +   Q+L+E+ V G  E+   VM D            +      +   + +S  V 
Sbjct: 195 GLQLSTIGQVLLEKSVKGWKEIEYEVMRD---SFGNCITVCNMENIDPVGIHTGDSIVVA 251

Query: 216 PAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           P++ +    Y+ ++  +     A+G +G     F  +P S +   +EIN 
Sbjct: 252 PSQTLSDKEYQMLRSASIDIINAVGIKGGCNVQFALNPHSFEYAVIEINP 301


>gi|312130630|ref|YP_003997970.1| acetyl-CoA carboxylase, biotin carboxylase [Leadbetterella
           byssophila DSM 17132]
 gi|311907176|gb|ADQ17617.1| acetyl-CoA carboxylase, biotin carboxylase [Leadbetterella
           byssophila DSM 17132]
          Length = 484

 Score = 75.5 bits (185), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 37/219 (16%), Positives = 82/219 (37%), Gaps = 17/219 (7%)

Query: 58  LHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS---- 110
           +H  +G   E+       E   I +      +  +   K+ +K+ V    +P+ P     
Sbjct: 77  IHPGYGFLSENAEFAEKTENAGITFIGPSPESIRIMGSKLAAKERVKDYNIPMVPGTDTA 136

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD----QSIPLDLLQSSSWNHGDQL 166
           I   +  +++   I  P +IK   GG   G+ V++K     + +   + ++++      +
Sbjct: 137 ITDPQTALETAISIGFPVLIKASAGGGGKGMRVVEKQEDFIEQMERAVSEATAAFGDGSV 196

Query: 167 LIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
            +E+YV     +   V+ DA  +   +   +        K           + +   I  
Sbjct: 197 FLEKYVASPRHIEIQVLADAYGNTIHLFERECSIQRRHQK----VIEEAPSSVLDETIRS 252

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           ++   A    Q+   +G+   +FL D      ++LE+N 
Sbjct: 253 QMGAAAVRVAQSCNYKGVGTVEFLLDENKN-FYFLEMNT 290


>gi|145231034|ref|XP_001389781.1| urea carboxylase [Aspergillus niger CBS 513.88]
 gi|134055908|emb|CAK37386.1| unnamed protein product [Aspergillus niger]
          Length = 1238

 Score = 75.5 bits (185), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 33/276 (11%), Positives = 81/276 (29%), Gaps = 33/276 (11%)

Query: 39  DRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQ 98
              +  +    K D      +G   E+           + +      +      K  ++ 
Sbjct: 64  GEQIIDIAKKYKADAIIPG-YGFLSENADFARAASSAGLAFVGPSPESIEAFGLKHTARD 122

Query: 99  VVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154
           + +  GVP+ P     +      + +   +  P ++K   GG  +G++    ++ +    
Sbjct: 123 LATKAGVPIVPGSKGLVKSEEEAVATAKELGFPVMLKATAGGGGMGLLTCNTEKEVRDAF 182

Query: 155 LQSSS-----WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209
               S     + +    +   Y     +   V G+           +        K    
Sbjct: 183 ATVKSRGGALFKNDGVFIERYYPSSHHIEVQVFGNGDGKAIYFGERECSIQRRHQK---- 238

Query: 210 NSTHVLPAKI---PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
                 P+        + + +   A    ++IG       ++L D  +   F+LE+N   
Sbjct: 239 -VIEECPSPFVTRNPGLRERLGDAAVRLAESIGYGSAGTIEYLVDDETGAFFFLEMNT-- 295

Query: 267 GMTPVSIFPEMAAYAGYS---FR-ELLLWMVEDASC 298
                     +    G +   +  +L+  M++ A  
Sbjct: 296 ---------RLQVEHGITELCYDIDLVDLMLKQADA 322


>gi|254246384|ref|ZP_04939705.1| Biotin carboxylase [Burkholderia cenocepacia PC184]
 gi|124871160|gb|EAY62876.1| Biotin carboxylase [Burkholderia cenocepacia PC184]
          Length = 455

 Score = 75.5 bits (185), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 36/222 (16%), Positives = 78/222 (35%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H  +G   E+      +E     +         +  DK+ +KQ +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAERVEQSGFTFIGPRPETIRMMGDKVTAKQTMIKTGVPCVPGSEG 136

Query: 113 ----VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
                 +  +     I  P +IK   G    G+ V+  + ++   +     ++       
Sbjct: 137 ALPDDPKEIVKIARTIGYPVIIKAAGGCGGRGMRVVHTEAALVNAVNMTREEAGRALGNP 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
           Q+ +E++++    +   V+ DA  +   +            K          PA  IP  
Sbjct: 197 QVYMEKFLENPRHIEIQVLSDAYKNAIWLGERDCSMQRRHQK-----VIEEAPAPGIPRR 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +   +      A + +G  G    +FL+   + + +++E+N 
Sbjct: 252 LIDRIGDRCADACKKMGYLGAGTFEFLY--ENGEFYFIEMNT 291


>gi|332530693|ref|ZP_08406624.1| acetyl-CoA carboxylase, biotin carboxylase [Hylemonella gracilis
           ATCC 19624]
 gi|332039861|gb|EGI76256.1| acetyl-CoA carboxylase, biotin carboxylase [Hylemonella gracilis
           ATCC 19624]
          Length = 449

 Score = 75.5 bits (185), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 36/225 (16%), Positives = 84/225 (37%), Gaps = 27/225 (12%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      +E     +      +  +  DK+ +KQ +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAERVEKSGFQFIGPTPESIRIMGDKVSAKQAMIKAGVPCVPG--- 133

Query: 114 NRFTMDSQHL--------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWN 161
           +   +    +        +  P +IK   GG   G+ V+  + ++   +     ++++  
Sbjct: 134 SEGELPDDPVQMKRIAKSVGYPVIIKAAGGGGGRGMRVVHTEAALVNAVQMTKAEAAAAF 193

Query: 162 HGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-I 219
           +   + +E++++    +   ++ D   +   +            K          PA  I
Sbjct: 194 NNPAVYMEKFLENPRHVEIQILADKHKNAVYLGERDCSMQRRHQK-----IIEEAPAPGI 248

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           P  + ++V      A + IG RG    +FL+     + +++E+N 
Sbjct: 249 PRKLIEKVGASCVNACKKIGYRGAGTFEFLY--QDGEFYFIEMNT 291


>gi|324327847|gb|ADY23107.1| pyruvate carboxylase [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 1148

 Score = 75.5 bits (185), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 31/243 (12%), Positives = 82/243 (33%), Gaps = 21/243 (8%)

Query: 35  QIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSM 91
            ID    +  ++   K +   + +H  +G   E+       E   I +         +  
Sbjct: 62  PIDAYLDIEGIIEIAKSNHV-DAIHPGYGFLSENIQFAKRCEEEGIIFIGPKSKHLDMFG 120

Query: 92  DKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147
           DK++++       +PV P     +               P +IK   GG   G+ +++  
Sbjct: 121 DKVKARTQAQLAQIPVIPGSDGPVDSLEEVGKFAEKYDYPIIIKASLGGGGRGMRIVRTS 180

Query: 148 QSIPL----DLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSY 202
           + +         ++ +    D++ +E++V+    +   ++ D   +V  +          
Sbjct: 181 EELRESYNRAKSEAKAAFGNDEVYVEKFVEKPKHIEVQILADEEGNVVHLYE-----RDC 235

Query: 203 ELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
            ++        + P   +  D+ + +   A    + +        +FL        +++E
Sbjct: 236 SVQRRHQKVVEIAPSVSLSDDLRQRICDAAVKLTKNVNYLNAGTVEFLV--KDDNFYFIE 293

Query: 262 INV 264
           +N 
Sbjct: 294 VNP 296


>gi|269214482|ref|ZP_05986663.2| acetyl-CoA carboxylase, biotin carboxylase subunit [Neisseria
           lactamica ATCC 23970]
 gi|269209605|gb|EEZ76060.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Neisseria
           lactamica ATCC 23970]
          Length = 482

 Score = 75.5 bits (185), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 81/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         L  DK+ +K  + + GVP  P    
Sbjct: 106 AVHPGYGFLAENADFAEQVEQSGFTFIGPKPDTIRLMGDKVSAKHAMIAAGVPCVPGSDG 165

Query: 112 LVNRFTMD---SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
            +     +       +  P +IK   GG   G+ V++K + +   +     ++ +     
Sbjct: 166 ALPDDDAEILKIADKVGYPVIIKASGGGGGRGMRVVEKKEDLLQSVEMTKAEAGAAFGNP 225

Query: 165 QLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+Y+     +   V+ D   +   +A           K          PA  I  +
Sbjct: 226 MVYMERYLQRPRHVEIQVLADEHGNAVYLAERDCSMQRRHQK-----VIEEAPAPFIDEE 280

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             K++ +    A + IG RG    +FL+     + F++E+N 
Sbjct: 281 ARKKIGKACADACKRIGYRGAGTFEFLY--EDGEFFFIEMNT 320


>gi|254486777|ref|ZP_05099982.1| methylcrotonyl-CoA carboxylase, alpha subunit [Roseobacter sp.
           GAI101]
 gi|214043646|gb|EEB84284.1| methylcrotonyl-CoA carboxylase, alpha subunit [Roseobacter sp.
           GAI101]
          Length = 649

 Score = 75.5 bits (185), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 42/226 (18%), Positives = 80/226 (35%), Gaps = 25/226 (11%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H  +G   E+      +E   + +      A      K  +K ++   GVPV P    
Sbjct: 77  AIHPGYGFLSENPDFVEAVEAAGLVFIGPSAKAIRAMGLKDAAKALMIQAGVPVVPGYHG 136

Query: 113 ---VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS-----SWNHGD 164
               +         I  P +IK + GG   G+ +++        L  +      ++ + D
Sbjct: 137 ADQDDALLAAEAAKIGYPVLIKAVAGGGGKGMRLVEAADGFQAALDSARSEAKTAFGNAD 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            +L+E++V     +   V GD +  V              L+          PA  +  +
Sbjct: 197 -VLVEKFVTKPRHIEVQVFGDGTNAV------HLFERDCSLQRRHQKVIEEAPAPGMTPE 249

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR----KVFWLEINV 264
           +   + + A  A +AIG  G    +F+ D          F++E+N 
Sbjct: 250 MRDAMGQAAVTAAEAIGYAGAGTIEFIVDGSHGLRPDGFFFMEMNT 295


>gi|317480038|ref|ZP_07939150.1| phosphoribosylglycinamide formyltransferase 2 [Bacteroides sp.
           4_1_36]
 gi|316903780|gb|EFV25622.1| phosphoribosylglycinamide formyltransferase 2 [Bacteroides sp.
           4_1_36]
          Length = 388

 Score = 75.5 bits (185), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 47/253 (18%), Positives = 86/253 (33%), Gaps = 37/253 (14%)

Query: 33  VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
            S +D D ++  V+   +PD+    +     E         L +       ++ SA +++
Sbjct: 48  FSMLDGD-ALERVVRKHQPDIIVPEIEAIRTE--------RLYDFEKEGIQVVPSARAVN 98

Query: 93  -----KMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVIK 145
                K          G+                +   I  P V+KPL   S  G  ++K
Sbjct: 99  FTMNRKAIRDLAAKELGLKTAKYFYAKSLDELKAAAEKIGFPCVVKPLMSSSGKGQSLVK 158

Query: 146 KDQSIPLDLLQSSSWNHGD--QLLIEQYVDGIE----LTCGVMGDASLDVTEIA-VPKSD 198
               +        + + GD  +L+IE+++        LT       +L    I  V K  
Sbjct: 159 SADELEHAWEYGCNGSRGDIKELIIEEFIKFDSEITLLTVTQKNGPTLFCPPIGHVQKGG 218

Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
            Y               PA I     +E Q +A    +A+   G+   +F     +  V+
Sbjct: 219 DY----------RESFQPAHIDPAHLREAQDMAEKVTRALTGAGLWGVEFFLSHENG-VY 267

Query: 259 WLEINVQP---GM 268
           + E++ +P   GM
Sbjct: 268 FSELSPRPHDTGM 280


>gi|298364388|gb|ADI79330.1| chloroplast biotin carboxylase [Brassica oleracea]
          Length = 536

 Score = 75.5 bits (185), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 80/220 (36%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
           +LH  +G   E+ L   +     I +      +  +  DK  +++ + + GVP  P    
Sbjct: 148 MLHPGYGFLAENALFVEMCREHRINFIGPNPDSIRVMGDKSTARETMKNAGVPTVPGSDG 207

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS----IPLDLLQSSSWNHGDQ 165
            +      +   + I  P +IK   GG   G+ +  +       +     ++++    D 
Sbjct: 208 LLQSTEEGVRLANEIGYPVMIKATAGGGGRGMRLANEPSEFVKLLQQAKSEAAAAFGNDG 267

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+YV +   +   ++ D   +V               K             +  ++ 
Sbjct: 268 VYLEKYVQNPRHIEFQILADKFGNVVHFGECDCSIQRRNQKLL----EEAPSPALTPELR 323

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K +   A  A  +IG  G+   +FL D      +++E+N 
Sbjct: 324 KAMGDAAVAAAASIGYIGVGTVEFLLDER-GSFYFMEMNT 362


>gi|332557627|ref|ZP_08411949.1| propionyl-CoA carboxylase, alpha subunit [Rhodobacter sphaeroides
           WS8N]
 gi|332275339|gb|EGJ20654.1| propionyl-CoA carboxylase, alpha subunit [Rhodobacter sphaeroides
           WS8N]
          Length = 666

 Score = 75.5 bits (185), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 74/220 (33%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E     A LE   + +      A     DK+ SK++    GV   P  + 
Sbjct: 77  AVHPGYGFLSERMDFAAALEAAGVVFIGPPSGAIEAMGDKITSKKLAKEAGVSTVPGYMG 136

Query: 114 NRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
                D      + I  P +IK   GG   G+ +   +  +         ++++    D+
Sbjct: 137 LIADADEAVKISNEIGYPVMIKASAGGGGKGMRIAWSEAEVKEGFESSKNEAANSFGDDR 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE++V     +   V+ D   +   +   +        K             +     
Sbjct: 197 IFIEKFVTQPRHIEIQVLADKHGNCVYLHERECSIQRRNQK----VIEEAPSPFLDEATR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K +   A    +A+G       +F+ D      ++LE+N 
Sbjct: 253 KAMGEQACALAKAVGYASAGTVEFIVDGQKN-FYFLEMNT 291


>gi|328712262|ref|XP_003244765.1| PREDICTED: methylcrotonoyl-CoA carboxylase subunit alpha,
           mitochondrial-like isoform 2 [Acyrthosiphon pisum]
          Length = 647

 Score = 75.5 bits (185), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 86/221 (38%), Gaps = 18/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       +  ++ +      A      K +SK+++S  GVPV      
Sbjct: 38  AIHPGYGFLSENASFAQYCQSNDLIFIGPPPNAIESMGIKSKSKEIMSEAGVPVIEGYHG 97

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
                D      + I  P +IK +KGG   G+ ++ K+     +L+ +   +      D 
Sbjct: 98  KDQNSDFLQHEANKIGYPVMIKAIKGGGGKGMKIVSKESEFFENLMSAKRESLSSFGDDS 157

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDI 223
           +LIE+Y+     +   V  D   +   +           ++          PA ++   +
Sbjct: 158 VLIEKYIQQPRHVEVQVFADQHKNCVYL-----FERDCSVQRRHQKVMEEAPAPRLSESL 212

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +   A  A +A+G  G    +F+FD  +   +++E+N 
Sbjct: 213 RQHLGETAVRAAKAVGYEGAGTVEFIFDNTTNMFYFMEMNT 253


>gi|310822098|ref|YP_003954456.1| argininosuccinate lyase 2-like protein [Stigmatella aurantiaca
           DW4/3-1]
 gi|309395170|gb|ADO72629.1| argininosuccinate lyase 2-like protein [Stigmatella aurantiaca
           DW4/3-1]
          Length = 417

 Score = 75.5 bits (185), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 43/256 (16%), Positives = 90/256 (35%), Gaps = 32/256 (12%)

Query: 67  LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ--HLI 124
            V AI     + Y       +    +K  ++ ++ + G+P     ++      +Q    +
Sbjct: 89  TVAAIAARHGLRYLQPRAAQA--CHNKHEARALLRAAGLPGPEFHVIASEAEAAQLAQTV 146

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLD-------LLQSSSWNHGDQLLIEQYVDGIEL 177
             P V+KP     S G+  +   + +                 +   ++L+E +++G E 
Sbjct: 147 RFPCVVKPPAESGSTGVRRVDTPEELLAHFRSLHSRAANERGQSLHGEVLVESFLEGPEF 206

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           +   M  A      + V  +  Y     Y      H  PA +P +  + ++        A
Sbjct: 207 SVETMTLADGTTHVLGV--TQKYLSAPPYFVEMG-HDFPADLPPERRRALEEAVLAGLAA 263

Query: 238 IGCR-GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYA-GYS-FRELLLWMV- 293
           +G   G + ++  F P       +EIN +       + PE+   + G      +L  M+ 
Sbjct: 264 VGFDFGPAHTEIRFTPAG--PVIIEINPR---LAGGMIPELVRLSTGVDLLSAMLDQMLG 318

Query: 294 ---------EDASCLR 300
                    +D +C+R
Sbjct: 319 RPVDLTHTRQDVACIR 334


>gi|295395931|ref|ZP_06806116.1| pyruvate carboxylase [Brevibacterium mcbrellneri ATCC 49030]
 gi|294971204|gb|EFG47094.1| pyruvate carboxylase [Brevibacterium mcbrellneri ATCC 49030]
          Length = 1133

 Score = 75.5 bits (185), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 35/250 (14%), Positives = 82/250 (32%), Gaps = 20/250 (8%)

Query: 28  DAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87
           + G  V        +  V      D  +   +G   E+  +    +   I +        
Sbjct: 53  EKGHPVRAYLSVDEIIRVAKESGADAIYPG-YGFLSENPDLARACDANGITFIGPAADVL 111

Query: 88  ALSMDKMRSKQVVSSCGVPVC----PSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIV 143
            ++ +K+ +        +P      PS  +++   +S+  +  P  +K + GG   G+  
Sbjct: 112 QMAGNKVDALDAARRADIPTLASTRPSADLDKLLAESED-MEFPLFVKAVAGGGGRGMRR 170

Query: 144 IKKD----QSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSD 198
           +        ++   + ++        + IEQ V     +   V+ D   +   +      
Sbjct: 171 VNSRTELVDALKAAMREAEGAFGDPTVFIEQAVQRPRHIEVQVLADNDSNAVHLFERDCS 230

Query: 199 FYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS--- 254
                 K        + PA  +  +I + +   A    +A+G +     +FL +      
Sbjct: 231 IQRRHQK-----VVEIAPAPHLEPEIAQALHEDALKFARALGYQNAGTVEFLLETEGPRK 285

Query: 255 RKVFWLEINV 264
            K  ++E+N 
Sbjct: 286 GKHAFIEMNP 295


>gi|154253213|ref|YP_001414037.1| carbamoyl-phosphate synthase L chain ATP-binding [Parvibaculum
           lavamentivorans DS-1]
 gi|154157163|gb|ABS64380.1| Carbamoyl-phosphate synthase L chain ATP-binding [Parvibaculum
           lavamentivorans DS-1]
          Length = 671

 Score = 75.5 bits (185), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 82/220 (37%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H  +G   E+      L+   I +    I A  +  DK+ SK+  ++  V   P  L 
Sbjct: 77  AVHPGYGFLSENAKFAQALKDNGIAFIGPNIKAVEVMGDKIESKKFANAAKVNTVPGYLG 136

Query: 113 VNRFTMDS---QHLISPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSWNHGDQ 165
           V +   ++    + I  P +IK   GG   G+ +   ++ +       + ++ S    D+
Sbjct: 137 VIKDVAEATKIANEIGYPVMIKASAGGGGKGMRIAWSEKEVADGFTSSMSEAKSSFGDDR 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE++V     +   V+GD   +V  +   +        K             +     
Sbjct: 197 VFIEKFVTQPRHIEIQVLGDKHGNVIYVMERECSIQRRNQK----VIEEAPSPFLDEATR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K +   +    +A+        +F+ D   R  ++LE+N 
Sbjct: 253 KAMGEQSVALAKAVNYESAGTVEFIVDK-DRNFYFLEMNT 291


>gi|89055861|ref|YP_511312.1| carbamoyl-phosphate synthase L chain, ATP-binding [Jannaschia sp.
           CCS1]
 gi|88865410|gb|ABD56287.1| biotin carboxyl carrier protein / biotin carboxylase [Jannaschia
           sp. CCS1]
          Length = 680

 Score = 75.5 bits (185), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 77/221 (34%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H  +G   E+      LE   + +      A     DK+ SK++    GV   P  + 
Sbjct: 77  AVHPGYGFLSENMKFAEALEAEGVAFIGPPAGAIEKMGDKITSKKIAQDAGVSTVPGHMG 136

Query: 113 VNRFTMDSQHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGD 164
           +     ++  +   I  P ++K   GG   G+ +   +  +           +SS+   D
Sbjct: 137 LIEDAAEAIRISGEIGYPVMLKASAGGGGKGMRIAWSEDEVAEGFQASKNEAASSFG-DD 195

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           ++ IE++V     +   V+ D   +   +   +        K             +    
Sbjct: 196 RMFIEKFVTQPRHIEIQVLADQHGNAIYLGERECSIQRRNQK----VIEEAPSPFLDEAT 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            K +   A    QA+G       +F+ D   R  ++LE+N 
Sbjct: 252 RKAMGEQAVSLVQAVGYTSAGTVEFIVDG-DRNFYFLEMNT 291


>gi|325914362|ref|ZP_08176709.1| 3-methylcrotonoyl-CoA carboxylase, alpha subunit [Xanthomonas
           vesicatoria ATCC 35937]
 gi|325539370|gb|EGD11019.1| 3-methylcrotonoyl-CoA carboxylase, alpha subunit [Xanthomonas
           vesicatoria ATCC 35937]
          Length = 675

 Score = 75.5 bits (185), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 76/221 (34%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H  +G   E+           I +      A     DK  +K ++   GVP+ P    
Sbjct: 90  AIHPGYGFLSENAAFADACAQAGIVFIGPPASAIRAMGDKSAAKALMERAGVPLTPGYHG 149

Query: 113 ---VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
                 F       I  P +IK   GG   G+  +    +    L     ++ S      
Sbjct: 150 DEQAPAFLRAQADAIGYPILIKASAGGGGKGMRRVDASAAFEEALASCQREAQSAFGNAH 209

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           +L+E+YV+    +   V GD   +V  +           ++          PA  +  D 
Sbjct: 210 VLVEKYVERPRHIEIQVFGDTHGEVVYL-----FERDCSVQRRHQKVLEEAPAPGMTEDR 264

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              + + A  A +A+G  G    +F+  P     +++E+N 
Sbjct: 265 RAAMGKAAVDAARAVGYVGAGTVEFIAGP-GGDFYFMEMNT 304


>gi|225022575|ref|ZP_03711767.1| hypothetical protein CORMATOL_02615 [Corynebacterium matruchotii
           ATCC 33806]
 gi|305680461|ref|ZP_07403269.1| phosphoribosylglycinamide formyltransferase 2 [Corynebacterium
           matruchotii ATCC 14266]
 gi|224944698|gb|EEG25907.1| hypothetical protein CORMATOL_02615 [Corynebacterium matruchotii
           ATCC 33806]
 gi|305659992|gb|EFM49491.1| phosphoribosylglycinamide formyltransferase 2 [Corynebacterium
           matruchotii ATCC 14266]
          Length = 408

 Score = 75.5 bits (185), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 46/281 (16%), Positives = 104/281 (37%), Gaps = 42/281 (14%)

Query: 19  GKACASALEDAGFKVSQID--------------------VDRSVGLVLAHLKPDLAFNVL 58
           GK  A A +  G +V  +D                      ++V  ++ ++ P      +
Sbjct: 27  GKEVAIAFQRLGVEVHAVDRYENAPAHQVAHFAYKVDLTDGKAVAELVDYIDPHFIVPEI 86

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASA----LSMDK-MRSKQVVSSCGVPVCPSILV 113
                E+     ++EL +   +   ++ +A    L+M++    K      G+PV      
Sbjct: 87  -----EEIATATLVELED---SGRTVVPTARATRLTMNRQRIRKLAAVELGLPVAAYWFA 138

Query: 114 NRFTMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
           + F      +     P ++KP+   S  G  V++ +  + L    + +    +++++E++
Sbjct: 139 DDFDDFRAAIRHAGFPCIVKPIMSTSGRGQTVVRSEDDVLLAWETAQTGGRPERVIVERF 198

Query: 172 VD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
           +D   E+T  V+        E+A    +   +    +S       P  +        + +
Sbjct: 199 IDFDFEITLLVVRSIDPTTGELATWFCEPIGHRQD-ASGYVESWQPMPLSPAALDSARSI 257

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP---GM 268
           A     A+G RG+   +        +V++ E++  P   GM
Sbjct: 258 AARITNALGGRGVFGVELFI--SGDEVYFSEVSPHPHDTGM 296


>gi|160889546|ref|ZP_02070549.1| hypothetical protein BACUNI_01970 [Bacteroides uniformis ATCC 8492]
 gi|270296670|ref|ZP_06202869.1| phosphoribosylglycinamide formyltransferase 2 [Bacteroides sp. D20]
 gi|156861063|gb|EDO54494.1| hypothetical protein BACUNI_01970 [Bacteroides uniformis ATCC 8492]
 gi|270272657|gb|EFA18520.1| phosphoribosylglycinamide formyltransferase 2 [Bacteroides sp. D20]
          Length = 388

 Score = 75.5 bits (185), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 47/253 (18%), Positives = 86/253 (33%), Gaps = 37/253 (14%)

Query: 33  VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
            S +D D ++  V+   +PD+    +     E         L +       ++ SA +++
Sbjct: 48  FSMLDGD-ALERVVRKHQPDIIVPEIEAIRTE--------RLYDFEKEGIQVVPSARAVN 98

Query: 93  -----KMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVIK 145
                K          G+                +   I  P V+KPL   S  G  ++K
Sbjct: 99  FTMNRKAIRDLAAKELGLKTAKYFYAKSLDELKAAAEKIGFPCVVKPLMSSSGKGQSLVK 158

Query: 146 KDQSIPLDLLQSSSWNHGD--QLLIEQYVDGIE----LTCGVMGDASLDVTEIA-VPKSD 198
               +        + + GD  +L+IE+++        LT       +L    I  V K  
Sbjct: 159 SADELEHAWEYGCNGSRGDIKELIIEEFIKFDSEITLLTVTQKNGPTLFCPPIGHVQKGG 218

Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
            Y               PA I     +E Q +A    +A+   G+   +F     +  V+
Sbjct: 219 DY----------RESFQPAHIDPAHLREAQDMAEKVTRALTGAGLWGVEFFLSHENG-VY 267

Query: 259 WLEINVQP---GM 268
           + E++ +P   GM
Sbjct: 268 FSELSPRPHDTGM 280


>gi|146299502|ref|YP_001194093.1| phosphoribosylglycinamide formyltransferase 2 [Flavobacterium
           johnsoniae UW101]
 gi|146153920|gb|ABQ04774.1| phosphoribosylglycinamide formyltransferase 2 [Flavobacterium
           johnsoniae UW101]
          Length = 385

 Score = 75.5 bits (185), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 43/256 (16%), Positives = 89/256 (34%), Gaps = 37/256 (14%)

Query: 30  GFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
           GF+V  +    ++  ++A  +PD     +     E           +       ++ SA 
Sbjct: 43  GFEVINMLDGEALDRIVAKHQPDFIVPEIEAIRTE--------RFYDYEKQGITVVPSAK 94

Query: 90  SMD-----KMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI--SPPYVIKPLKGGSSLGII 142
           + +     K          G+               + ++    P V+KPL   S  G  
Sbjct: 95  AANFTMNRKAIRDLAAKELGLRTAKYEYATSAEELQKAVLEIGIPCVVKPLMSSSGKGQS 154

Query: 143 VIKKDQSIPLDLLQSSSWNHGD--QLLIEQYVDGIELTCGVM-----GDASLDVTEIAVP 195
            IK +  I      + + + GD  ++++E +VD       ++      + +L    I   
Sbjct: 155 TIKTESDIEKAWQYAVAGSRGDVIEVIVEAFVD-FHSEITLLTITQNDNPTLFCAPIG-H 212

Query: 196 KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255
           + +   Y+  +         PA +      E Q +A    +A+G  G+   +F       
Sbjct: 213 RQERGDYQESW--------QPALVSEKDLYEAQDMAEKITEALGGAGLFGVEFFLTKEG- 263

Query: 256 KVFWLEINVQP---GM 268
            V++ E++ +P   GM
Sbjct: 264 -VYFSELSPRPHDTGM 278


>gi|329122075|ref|ZP_08250683.1| carbamoyl-phosphate synthase, large subunit [Dialister
           micraerophilus DSM 19965]
 gi|327466882|gb|EGF12398.1| carbamoyl-phosphate synthase, large subunit [Dialister
           micraerophilus DSM 19965]
          Length = 1068

 Score = 75.5 bits (185), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 48/286 (16%), Positives = 101/286 (35%), Gaps = 33/286 (11%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI---------DVD------------RSVGLV 45
           G ++E + +   G     +L + G +V  +         DVD              +  +
Sbjct: 20  GQAAEFDYA---GSQACQSLREEGVEVVLVNSNPSTIMTDVDLADRVYIEPITLPFITEI 76

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   +PD     L G  G +  VQ     +LE   +    S + A   + D+   K+ + 
Sbjct: 77  IKKERPDALLATLGGQVGLNMAVQLASAGVLEKYNVKLLGSSLHAIKHAEDRELFKEAMQ 136

Query: 102 SCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
               PV  S +       +D    +  P +I+P       G  + +    +     +   
Sbjct: 137 KINQPVPESEIFEELQPAVDFAEKLGYPVIIRPAYTLGGTGGGIARDRYEMEEIANRGIK 196

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +  +Q+L+E+ V G  E+   VM D S +   I V   +       ++  +        
Sbjct: 197 LSPINQILVERSVAGWKEIEFEVMRDKSDN--CIIVCAMENIDPVGVHTGDSIVVAPTLT 254

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +    Y+ +++ +    + +   G     +  D  + K + +E+N 
Sbjct: 255 LTDTQYQMMRKASLDIIRYLEIEGGCNVQYALDSKTNKYYVIEVNP 300



 Score = 70.5 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 80/220 (36%), Gaps = 13/220 (5%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPL 133
            I    S   +  ++ D+ R   ++    +      LV      ++    +  P +++P 
Sbjct: 649 GIRIIGSSNESIDMAEDRERFDTLMGQLNILRPKGCLVESIEEAIEKTKDLEYPLIVRPS 708

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
                  + ++     +   L ++   +H   +LI+QY+ G E+      DA  D  ++ 
Sbjct: 709 YVLGGRAMQIVYNYAELRQYLKEAVVASHEHPVLIDQYMIGREVEI----DAISDSIDVC 764

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
           +P            S +S  V P + +   I  ++         A+  +G+    F+   
Sbjct: 765 IPGIMEQIERSGVHSGDSFAVYPPQHLNQKIIDKLVTYTKQIACAMNVKGLVNIQFIVVK 824

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
              KV+ +E+N +   T     P M+   G +  E    +
Sbjct: 825 --DKVYVIEVNPRASRT----VPFMSKVTGINMVECATRI 858


>gi|229133622|ref|ZP_04262449.1| Biotin carboxylase [Bacillus cereus BDRD-ST196]
 gi|228650022|gb|EEL06030.1| Biotin carboxylase [Bacillus cereus BDRD-ST196]
          Length = 445

 Score = 75.5 bits (185), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 80/220 (36%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       +   I +             K+ S+  + +  VPV P I  
Sbjct: 77  AIHPGYGLLSENPSFPIRCKEEGIVFIGPSEEIITKMGSKIESRIAMQAADVPVVPGITT 136

Query: 114 N----RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
           N       ++    I  P ++K   GG  +G+ +++ +Q++         ++ ++    +
Sbjct: 137 NIETAEEAIEIAKQIGYPLMLKASAGGGGIGMQLMETEQTLTKAFESNKTRAQNFFGNGE 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+Y+ D   +   ++ D   +   +   +        K             +     
Sbjct: 197 MYLERYIADAHHIEIQLLADTHGNTVYLWERECSVQRRNQK----VIEEAPSPFLDEGTR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K +  +A  A +A+G       +FL D      ++LE+N 
Sbjct: 253 KAMGEVAVQAAKALGYTNAGTVEFLVDDQKN-FYFLEMNT 291


>gi|319791696|ref|YP_004153336.1| acetyL-CoA carboxylase, biotin carboxylase [Variovorax paradoxus
           EPS]
 gi|315594159|gb|ADU35225.1| acetyl-CoA carboxylase, biotin carboxylase [Variovorax paradoxus
           EPS]
          Length = 449

 Score = 75.5 bits (185), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 81/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---S 110
            +H  +G   E+      +E     +            DK+ +KQ +   GVP  P    
Sbjct: 77  AIHPGYGFLSENANFAERVEQSGFQFIGPTPDNIRTMGDKVSAKQAMIKAGVPCVPGSEG 136

Query: 111 ILVNRFTMDS--QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
            L +    +      I  P +IK   GG   G+ V+  + ++   +     ++ +     
Sbjct: 137 ELSDDAATNKRIARAIGYPVIIKAAGGGGGRGMRVVHTEAALVNAIQMTKAEAGAAFSNP 196

Query: 165 QLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+++ +   +   ++ D   +   +            K          PA  IP  
Sbjct: 197 AVYMEKFLQNPRHIEIQILADKHKNAVYLGERDCSMQRRHQK-----VIEESPAPGIPRK 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +++      A + IG RG    +FL+   + + +++E+N 
Sbjct: 252 LIEKIGERCAAACKKIGYRGAGTFEFLY--ENGEFYFIEMNT 291


>gi|219113683|ref|XP_002186425.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|209583275|gb|ACI65895.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 467

 Score = 75.5 bits (185), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 43/232 (18%), Positives = 80/232 (34%), Gaps = 24/232 (10%)

Query: 52  DLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
           D   + +H  +G   E+     ++    +        A      K RSK ++ + GVP  
Sbjct: 71  DTGVHAIHPGYGFLSENAAFAELVTNHRMTLVGPPPSAMTAMASKSRSKAIMEAAGVPTT 130

Query: 109 PSILVN---------RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----- 154
           P               F +     I  P +IK + GG   G+ ++ ++      L     
Sbjct: 131 PGYFDQMGLPEHQTVEFLLSQAVRIGFPVLIKAVMGGGGKGMRLVGQESEFDDALRACQR 190

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHV 214
              S++ + D LL +  V    +   ++ D+  +V              L+         
Sbjct: 191 EAQSAFGNADVLLEKYLVRPRHVEVQIVADSHGNVV-----HLFERDCSLQRRHQKIIEE 245

Query: 215 LPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS-RKVFWLEINV 264
            PA  +P D+   +      A +A+G       +FL D  +    F+ E+N 
Sbjct: 246 APASDLPPDLRARLGENGCQAARAVGYVNAGTVEFLLDTTTPGDFFFCEMNT 297


>gi|312144093|ref|YP_003995539.1| carbamoyl-phosphate synthase, large subunit [Halanaerobium sp.
           'sapolanicus']
 gi|311904744|gb|ADQ15185.1| carbamoyl-phosphate synthase, large subunit [Halanaerobium sp.
           'sapolanicus']
          Length = 1072

 Score = 75.5 bits (185), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 32/228 (14%), Positives = 83/228 (36%), Gaps = 24/228 (10%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--FTMDSQHLISPPYVIKPL 133
            +    + + +  L+ D+ R  ++++   +P                   I  P +++P 
Sbjct: 655 GVNILGTSVDSIDLAEDRDRFIKLLNELDIPTPAGKTAASLLEAEKIAAEIKYPVLVRPS 714

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS---LDVT 190
                  + V+  ++ +   +  +   +    +LI++Y+ G E+    + D     L   
Sbjct: 715 YVLGGRAMEVVYNEKELEEYMKNAVKVSPDRPVLIDKYLTGTEVEVDAISDGETVILPGI 774

Query: 191 EIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
              V ++  +S        +S  V P   +   I ++++  +    Q +   G+    ++
Sbjct: 775 MEHVERAGVHS-------GDSIAVYPPHNLSEKIKEKIEEYSIKISQKLNVEGVINIQYV 827

Query: 250 FDPLSRKVFWLEIN-----VQPGM---TPVSIFPEMAAY-AGYSFREL 288
            +    KV+ +E+N       P +   T V++         G   ++L
Sbjct: 828 VN--DNKVYVIEVNPRSSRTIPYLSKVTGVAMVDLATKALLGIKLKDL 873



 Score = 73.2 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 52/286 (18%), Positives = 106/286 (37%), Gaps = 33/286 (11%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQIDVD---------------------RSVGLV 45
           G ++E + S   G     AL++ G +V  ++ +                      S+  +
Sbjct: 21  GQAAEFDYS---GSQACRALKEEGIEVVLVNSNPATIMTDENMADRVYIEPLTLESIIEI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           L   KPD     L G    +  +      IL+ L++    + I     + D+   K+++ 
Sbjct: 78  LRKEKPDGLIPTLGGQIALNLAIDLAESKILDELDVELLGTPIKTIEKAEDRNTFKELMD 137

Query: 102 SCGVPVCPSILVNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G PV  S +       ++    I  P +++P       G  V    + +    ++   
Sbjct: 138 QIGEPVLDSKIAENVEQAAEIAKKIGFPVIVRPAYTMGGTGGGVADNLEELKEITIRGFK 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   Q+LIE+ + G  E+   VM DA+ +   I V   + +     ++  +        
Sbjct: 198 HSLIGQVLIEKSIKGWKEIEYEVMRDANDN--CIVVCNMENFDPVGVHTGDSIVVAPSQT 255

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +    Y+  +  A    +A+G  G     +  DP S + + +E+N 
Sbjct: 256 LSDKEYQMFRSSALKIIRALGIEGGCNVQYALDPDSFQYYIIEVNP 301


>gi|302851507|ref|XP_002957277.1| hypothetical protein VOLCADRAFT_77540 [Volvox carteri f.
           nagariensis]
 gi|300257372|gb|EFJ41621.1| hypothetical protein VOLCADRAFT_77540 [Volvox carteri f.
           nagariensis]
          Length = 517

 Score = 75.5 bits (185), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 80/220 (36%), Gaps = 18/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E      I     I +     +   L  DK  ++  +   GVP  P    
Sbjct: 119 AIHPGYGFLSERAEFVEICNDHGIEFIGPKPVQIRLMGDKSTARDTMKKAGVPTVPGSEG 178

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGDQ 165
            I  +   +++   I  P +IK   GG   G+ +  K++ +         ++ +      
Sbjct: 179 LIRDDADALENAQRIGYPIMIKATAGGGGRGMRLCTKEEDLLPLYKQAQQEAEAAFGNGA 238

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E++V +   +   V+ D   +V  +            K             +  ++ 
Sbjct: 239 VYMERFVQNPRHIEFQVLADKYGNVVHLGERDCSVQRRNQK----LIEEAPSPALTPEVR 294

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K +   A  A +AIG  G+   +FL++      +++E+N 
Sbjct: 295 KAMGDAAVAAAKAIGYVGVGTIEFLWEQKG--FYFMEMNT 332


>gi|169634299|ref|YP_001708035.1| putative Acetyl-/propionyl-coenzyme A carboxylase alpha chain
           [Includes: biotin carboxylase; biotin carboxyl carrier
           protein (BCCP)] [Acinetobacter baumannii SDF]
 gi|169153091|emb|CAP02161.1| putative Acetyl-/propionyl-coenzyme A carboxylase alpha chain
           [Includes: Biotin carboxylase ; Biotin carboxyl carrier
           protein (BCCP)] [Acinetobacter baumannii]
          Length = 646

 Score = 75.5 bits (185), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 33/198 (16%), Positives = 68/198 (34%), Gaps = 14/198 (7%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD----SQHLISPPYVIK 131
           +I +      A  L   K  SK  +   GVP  P    +R  ++        I  P ++K
Sbjct: 100 QITFIGPTASAIELMGSKRLSKIAMIEAGVPCVPGYEGDRQDLEYLATQAEQIGFPIMVK 159

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSS-----SWNHGDQLLIEQYVDGIELTCGVMGDAS 186
              GG   G+ ++++   +   L  +      ++  G+ +L +  +    +   V GD  
Sbjct: 160 ASAGGGGRGMRLVQQASELFEALQTARSEAENAFGSGELILEKAVIAPRHVEIQVFGDTH 219

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRS 246
            +   +            K             +  ++ +++   A  A +     G    
Sbjct: 220 GNYVYLFERDCSIQRRHQK----VVEEAPCPVMTPELRQKMGEAAVAAAKTCAYVGAGTV 275

Query: 247 DFLFDPLSRKVFWLEINV 264
           +FL D      ++LE+N 
Sbjct: 276 EFLLDAS-GAFYFLEMNT 292


>gi|156303227|ref|XP_001617488.1| hypothetical protein NEMVEDRAFT_v1g69081 [Nematostella vectensis]
 gi|156194143|gb|EDO25388.1| predicted protein [Nematostella vectensis]
          Length = 356

 Score = 75.5 bits (185), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 80/221 (36%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     I E   I +  +         DK  +K  + + GVP  P    
Sbjct: 45  AIHPGYGFLSENAKFSKICEEHGIKFIGASPEMIDRMGDKANAKSTMIAAGVPCVPGSEG 104

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS-----SSWNHGD 164
            I               P ++K   GG   G+  + K +++      +     +++ + D
Sbjct: 105 VIETFEECEKIAKATGYPVMLKASAGGGGKGMRGVFKPENLKDAWDSARQESKAAFGNDD 164

Query: 165 QLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
             + E+ ++    +   ++GD++     ++           K     +       +  ++
Sbjct: 165 MYM-EKLIEEPRHIEIQIVGDSTGRACHLSERDCSIQRRHQK----LTEETPSPFMTDEL 219

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +++ + A  A + I   G    +FL D   R  +++E+N 
Sbjct: 220 REKMGKAAVKAAEYIKYEGAGTIEFLVDKH-RNFYFMEMNT 259


>gi|160873969|ref|YP_001553285.1| carbamoyl-phosphate synthase L chain ATP-binding [Shewanella baltica
            OS195]
 gi|160859491|gb|ABX48025.1| Carbamoyl-phosphate synthase L chain ATP-binding [Shewanella baltica
            OS195]
 gi|315266203|gb|ADT93056.1| Carbamoyl-phosphate synthase L chain ATP-binding protein [Shewanella
            baltica OS678]
          Length = 1517

 Score = 75.5 bits (185), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 85/221 (38%), Gaps = 18/221 (8%)

Query: 57   VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
             LH   G   E     A+     + +    + +     +K  + +   +  VPV P    
Sbjct: 1018 ALHPGIGFLSESPQFAALCVNNGVNFVGPSVHSMTTMGNKSNAIKTSQAQNVPVVPGSHG 1077

Query: 111  -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI-----PLDLLQSSSWNHGD 164
             +      ++    I  P ++K ++GG   GI V+K+ + +           ++++ +GD
Sbjct: 1078 ILTNAEQAVNVASEIGYPVLLKAVQGGGGKGIQVVKRPEDMIGLFQKTATEAAAAFGNGD 1137

Query: 165  QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
              L E+YV     +   ++ D   +   + +          K    + + +    +P ++
Sbjct: 1138 LYL-EKYVTSLRHIEVQLLRDKFGNAKVLGLRDCSVQRNNQKVVEESGSTM----LPDEL 1192

Query: 224  YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             ++V         A    G    +F+++  + +V+++E+N 
Sbjct: 1193 KRQVLAYTRALGDATDYMGAGTVEFIYNLDANEVYFMEMNT 1233


>gi|313891643|ref|ZP_07825250.1| carbamoyl-phosphate synthase, large subunit [Dialister
           microaerophilus UPII 345-E]
 gi|313119921|gb|EFR43106.1| carbamoyl-phosphate synthase, large subunit [Dialister
           microaerophilus UPII 345-E]
          Length = 1068

 Score = 75.5 bits (185), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 48/286 (16%), Positives = 101/286 (35%), Gaps = 33/286 (11%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI---------DVD------------RSVGLV 45
           G ++E + +   G     +L + G +V  +         DVD              +  +
Sbjct: 20  GQAAEFDYA---GSQACQSLREEGVEVVLVNSNPSTIMTDVDLADRVYIEPITLPFITEI 76

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   +PD     L G  G +  VQ     +LE   +    S + A   + D+   K+ + 
Sbjct: 77  IKKERPDALLATLGGQVGLNMAVQLASAGVLEKYNVKLLGSSLHAIKHAEDRELFKEAMQ 136

Query: 102 SCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
               PV  S +       +D    +  P +I+P       G  + +    +     +   
Sbjct: 137 KINQPVPESEIFEELQPAVDFAEKLGYPVIIRPAYTLGGTGGGIARDRYEMEEIANRGIK 196

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +  +Q+L+E+ V G  E+   VM D S +   I V   +       ++  +        
Sbjct: 197 LSPINQILVERSVAGWKEIEFEVMRDKSDN--CIIVCAMENIDPVGVHTGDSIVVAPTLT 254

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +    Y+ +++ +    + +   G     +  D  + K + +E+N 
Sbjct: 255 LTDTQYQMMRKASLDIIRYLEIEGGCNVQYALDSKTNKYYVIEVNP 300



 Score = 70.5 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 80/220 (36%), Gaps = 13/220 (5%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPL 133
            I    S   +  ++ D+ R   ++    +      LV      ++    +  P +++P 
Sbjct: 649 GIRIIGSSNESIDMAEDRERFDTLMGQLNILRPKGCLVESIEEAIEKTKDLEYPLIVRPS 708

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
                  + ++     +   L ++   +H   +LI+QY+ G E+      DA  D  ++ 
Sbjct: 709 YVLGGRAMQIVYNYAELRQYLKEAVVASHEHPVLIDQYMIGREVEI----DAISDSIDVC 764

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
           +P            S +S  V P + +   I  ++         A+  +G+    F+   
Sbjct: 765 IPGIMEQIERSGVHSGDSFAVYPPQHLNQKIIDKLVTYTKQIACAMNVKGLVNIQFIVVK 824

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
              KV+ +E+N +   T     P M+   G +  E    +
Sbjct: 825 --DKVYVIEVNPRASRT----VPFMSKVTGINMVECATRI 858


>gi|152999354|ref|YP_001365035.1| carbamoyl-phosphate synthase L chain ATP-binding [Shewanella baltica
            OS185]
 gi|151363972|gb|ABS06972.1| Carbamoyl-phosphate synthase L chain ATP-binding [Shewanella baltica
            OS185]
          Length = 1517

 Score = 75.5 bits (185), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 85/221 (38%), Gaps = 18/221 (8%)

Query: 57   VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
             LH   G   E     A+     + +    + +     +K  + +   +  VPV P    
Sbjct: 1018 ALHPGIGFLSESPQFAALCVNNGVNFVGPSVHSMTTMGNKSNAIKTSQAQNVPVVPGSHG 1077

Query: 111  -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI-----PLDLLQSSSWNHGD 164
             +      ++    I  P ++K ++GG   GI V+K+ + +           ++++ +GD
Sbjct: 1078 ILTNAEQAVNVASEIGYPVLLKAVQGGGGKGIQVVKRPEDMIGLFQKTATEAAAAFGNGD 1137

Query: 165  QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
              L E+YV     +   ++ D   +   + +          K    + + +    +P ++
Sbjct: 1138 LYL-EKYVTSLRHIEVQLLRDKFGNAKVLGLRDCSVQRNNQKVVEESGSTM----LPDEL 1192

Query: 224  YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             ++V         A    G    +F+++  + +V+++E+N 
Sbjct: 1193 KRQVLAYTRALGDATDYMGAGTVEFIYNLDANEVYFMEMNT 1233


>gi|47523756|ref|NP_999514.1| pyruvate carboxylase, mitochondrial [Sus scrofa]
 gi|32185984|gb|AAP57516.1| pyruvate carboxylase [Sus scrofa]
          Length = 1178

 Score = 75.5 bits (185), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 32/233 (13%), Positives = 75/233 (32%), Gaps = 17/233 (7%)

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
            +  V      D      +G   E        +   + +            DK+ ++ + 
Sbjct: 101 DIIKVAKENNVDAVHPG-YGFLSERADFAQACQDAGVRFIGPSPEVVRKMGDKVEARAIA 159

Query: 101 SSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL---- 152
            + GVPV P     I       +  +    P + K   GG   G+ V+   + +      
Sbjct: 160 IAAGVPVVPGTDAPITSLHEAHEFSNTYGFPIIFKAAYGGGGRGMRVVHSYEELEENYTR 219

Query: 153 DLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
              ++ +      L +E++++    +   ++GD   +V  +            K      
Sbjct: 220 AYSEALAAFGNGALFVEKFIEKPRHIEVQILGDQYGNVLHLYERDCSIQRRHQK-----V 274

Query: 212 THVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
             + P A +   +   +   +    + +G       +FL D   +  +++E+N
Sbjct: 275 VEIAPAAHLDPQLRTRLTSDSVKLAKQVGYENAGTVEFLVDKHGKH-YFIEVN 326


>gi|313675823|ref|YP_004053819.1| carbamoyl-phosphate synthase, large subunit [Marivirga tractuosa
           DSM 4126]
 gi|312942521|gb|ADR21711.1| carbamoyl-phosphate synthase, large subunit [Marivirga tractuosa
           DSM 4126]
          Length = 937

 Score = 75.5 bits (185), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 50/278 (17%), Positives = 100/278 (35%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQID---------------------VDRSVGLVLAHLKPDLAFN 56
           SG   + +L + G +V+ I+                       +S+  +L     D    
Sbjct: 29  SGSQASRSLREEGIEVTLINSNPATIMTDEVTADNIYLKPLTKKSIIEILEKHDIDAVLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  ++     + +  ++      + A   + ++   +  +   GV VC    
Sbjct: 89  TMGGQTALNLAIECDKAGVWDKYKVKMLGVDVDAIDTTENRELFRLKMKELGVGVCEGET 148

Query: 113 VNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
              F    +    I  P VI+       LG  ++K        L      +   ++LIEQ
Sbjct: 149 ATSFLQGKEIAQRIGFPLVIRSSFTLGGLGGSIVKDPAEFDNALKDGLHSSPIHEVLIEQ 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            + G  E    ++ D   +V  I   ++    ++       +S  V PA+ +P  +Y+E+
Sbjct: 209 SILGWKEYELEILRDNIGNVIVICSVEN----FDPMGVHTGDSITVAPAQTLPDTVYQEM 264

Query: 228 QRLAFLAHQAIG-CRGISRSDFLFDPLSRKVFWLEINV 264
           + LA    + IG   G     F  +P +  +  +EIN 
Sbjct: 265 RNLAIKMIKGIGNFAGGCNVQFAVNPENDDIIGIEINP 302



 Score = 60.1 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 40/291 (13%), Positives = 93/291 (31%), Gaps = 60/291 (20%)

Query: 11  EREVSLSSGKACASALEDAGFKVSQI----DVDRSVGLVLAHLKPDLAF------NVLHG 60
           E + S        +A ++ G++   I    +   +       L  +  F       +LH 
Sbjct: 573 EFDYSCV--HGVLAA-KECGYETIMINCNPETVSTDFDTADKLYFEPVFWEHIYDIILHE 629

Query: 61  NFGEDGLV-----QAILEL------LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109
                G++     Q  L+L        I    +   A  L+ D+    ++++   +P   
Sbjct: 630 KPV--GVIVQLGGQTALKLAEKLNRYGINIIGTSFDALDLAEDRGSFSKLLADNDIPYPK 687

Query: 110 SILVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL 167
             +V      ++    I  P +++P       G+ ++  ++ +   ++       G+++L
Sbjct: 688 FTVVEDADNALEMAKDIGFPMLVRPSYVLGGQGMKIVINERELEEHVVDVLRDIPGNKVL 747

Query: 168 IEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA---------- 217
           ++ ++DG                 I          E  Y      HV PA          
Sbjct: 748 LDHFLDG----------------AIEAEADAICDGEDVYIIGVMQHVEPAGIHSGDSYAV 791

Query: 218 ----KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
                +   +  +++        A+  +G+    F     +  V+ +E N 
Sbjct: 792 LPPYNLGDFVLTQIETYTKKIALALETKGLINIQFAI--KNDIVYIIEANP 840


>gi|306833760|ref|ZP_07466886.1| carbamoyl-phosphate synthase, large subunit [Streptococcus bovis
           ATCC 700338]
 gi|304424097|gb|EFM27237.1| carbamoyl-phosphate synthase, large subunit [Streptococcus bovis
           ATCC 700338]
          Length = 1059

 Score = 75.5 bits (185), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 26/228 (11%), Positives = 77/228 (33%), Gaps = 19/228 (8%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYV 129
           L    +    + +     + D+   +Q +    +P  P           ++   I  P +
Sbjct: 646 LSKAGVAILGTQVSDLDRAEDRDLFEQALKELDIPQPPGQTATNEEEAVEAARKIGFPVL 705

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS--- 186
           ++P        + +++ ++++   +  +   +    +L++ Y+ G E     + D     
Sbjct: 706 VRPSYVLGGRAMEIVENEENLRSYMRTAVKASPDHPVLVDSYIVGRECEVDAISDGKDVL 765

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISR 245
           +      + ++  +S        +S  V P + +   I   +          + C G+  
Sbjct: 766 IPGIMEHIERAGVHS-------GDSMAVYPPQTLSKKIQDTIADYTKRLAIGLNCFGMMN 818

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
             F+       V+ +E+N +   T     P ++        ++   ++
Sbjct: 819 IQFVI--KDETVYVIEVNPRASRT----VPFLSKVTNIPMAQVATKLI 860



 Score = 72.1 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 49/296 (16%), Positives = 106/296 (35%), Gaps = 34/296 (11%)

Query: 25  ALEDAGFKVSQID-------VDRSVGLV--------------LAHLKPDLAFNVLHGNFG 63
           AL++ G+ V  ++        D+ +                 +   +PD     L G  G
Sbjct: 36  ALKEEGYSVVLVNSNPATIMTDKEIADQVYIEPLTLEFVTRIIRKERPDALLPTLGGQTG 95

Query: 64  EDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFT 117
            +  ++     IL+ L +    + + A   + D+   KQ++     P+  S +VN     
Sbjct: 96  LNMAMELSRAGILDELGVELLGTKLSAIDQAEDRDLFKQLMEDLNQPIPESEIVNTVDEA 155

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IE 176
           +     I  P +++P       G  +   ++ +          +   Q LIE+ + G  E
Sbjct: 156 VAFAESIGYPVIVRPAFTLGGTGGGMCDNEEELREIAENGLKLSPVTQCLIERSIAGFKE 215

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +   VM DA+ +   + V   + +     ++  +        +     + ++  +    +
Sbjct: 216 IEYEVMRDAADNA--LVVCNMENFDPVGIHTGDSIVFAPTQTLSDIENQMLRDASLSIIR 273

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           A+   G        DP S K + +E+N  P ++  S     +   GY   +L   +
Sbjct: 274 ALKIEGGCNVQLALDPNSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAKI 325


>gi|239998174|ref|ZP_04718098.1| acetyl-CoA carboxylase, biotin carboxylase [Neisseria gonorrhoeae
           35/02]
 gi|240015801|ref|ZP_04722341.1| acetyl-CoA carboxylase, biotin carboxylase [Neisseria gonorrhoeae
           FA6140]
 gi|240112145|ref|ZP_04726635.1| acetyl-CoA carboxylase, biotin carboxylase [Neisseria gonorrhoeae
           MS11]
 gi|240124922|ref|ZP_04737808.1| acetyl-CoA carboxylase, biotin carboxylase [Neisseria gonorrhoeae
           SK-92-679]
 gi|254492951|ref|ZP_05106122.1| acetyl-CoA carboxylase [Neisseria gonorrhoeae 1291]
 gi|268594026|ref|ZP_06128193.1| acetyl-CoA carboxylase [Neisseria gonorrhoeae 35/02]
 gi|268598203|ref|ZP_06132370.1| acetyl-CoA carboxylase [Neisseria gonorrhoeae MS11]
 gi|268683501|ref|ZP_06150363.1| acetyl-CoA carboxylase [Neisseria gonorrhoeae SK-92-679]
 gi|226511991|gb|EEH61336.1| acetyl-CoA carboxylase [Neisseria gonorrhoeae 1291]
 gi|268547415|gb|EEZ42833.1| acetyl-CoA carboxylase [Neisseria gonorrhoeae 35/02]
 gi|268582334|gb|EEZ47010.1| acetyl-CoA carboxylase [Neisseria gonorrhoeae MS11]
 gi|268623785|gb|EEZ56185.1| acetyl-CoA carboxylase [Neisseria gonorrhoeae SK-92-679]
 gi|317163464|gb|ADV07005.1| acetyl-CoA carboxylase, biotin carboxylase [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 453

 Score = 75.5 bits (185), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 82/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         L  DK+ +K  + + GVP  P    
Sbjct: 77  AVHPGYGFLAENADFAEQVEQSGFTFIGPKPDTIRLMGDKVSAKHAMIAAGVPCVPGSDG 136

Query: 112 LVNRFTMD---SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
            +     +       +  P +IK   GG   G+ V++K + +   +     ++ +     
Sbjct: 137 ALPDDDAEILKIADKVGYPVIIKASGGGGGRGMRVVEKKEDLLQSVEMTKAEAGAAFGNP 196

Query: 165 QLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+Y+     +   V+ D   +   +A          L+          PA  I  +
Sbjct: 197 MVYMERYLQRPRHVEIQVLADEHGNAVYLAE-----RDCSLQRRHQKVIEEAPAPFIDEE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             K++ +    A + IG RG    +FL+     + F++E+N 
Sbjct: 252 ARKKIGKACTDACKRIGYRGAGTFEFLY--EDGEFFFIEMNT 291


>gi|116618091|ref|YP_818462.1| acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha /
           biotin carboxylase [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
 gi|116096938|gb|ABJ62089.1| acetyl-CoA carboxylase carboxyltransferase subunit alpha
           [Leuconostoc mesenteroides subsp. mesenteroides ATCC
           8293]
          Length = 446

 Score = 75.5 bits (185), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 83/220 (37%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      +E + I +        A   DK +++Q +S  GVP+      
Sbjct: 83  AIHPGYGFLSENPNFAKQVEEMGIVFIGPTSEVIAQMGDKEKARQFMSEAGVPIVSGSDS 142

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQS----IPLDLLQSSSWNHGDQ 165
               +D        I  P ++K + GG   G+ ++    S      +   +  +     +
Sbjct: 143 FFEDVDIGFKQAKKIGYPVMLKSVAGGGGKGMRLVSNQDSFKSLFEVAQSEIMASVGDPR 202

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E++V     +   ++GD   +   +        S+  K      +H+    +     
Sbjct: 203 MYLEKFVSKPRHIEVQILGDGLGNAIVLGERDCTIQSHHQKVIEEAPSHL----LDETTR 258

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K++  ++  A + +  R     +FL+     K +++E+N 
Sbjct: 259 KKMLAVSLNAVKRMAYRSAGTFEFLYQGP-GKFYFMEMNT 297


>gi|311697070|gb|ADP99943.1| methylcrotonyl-CoA carboxylase, alpha subunit [marine bacterium
           HP15]
          Length = 664

 Score = 75.5 bits (185), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 80/221 (36%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       E   I +      A A    K  +K ++   GVP+ P    
Sbjct: 77  AIHPGYGFLSENTGFAESCEANNIVFIGPPSSAIAAMGSKSAAKAIMEKAGVPLVPGYHG 136

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKK----DQSIPLDLLQSSSWNHGDQ 165
           +  +++           P ++K + GG   G+ V+      D ++     ++ +      
Sbjct: 137 DDQSVETLRAEAEKCGFPLLLKAVAGGGGKGMRVVNNMGEFDDALAAAKREAQNAFGNPD 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           +LIE+Y+     +   V  D       +A          ++          PA  +  + 
Sbjct: 197 MLIERYLTQPRHVEIQVFCDQEGKGVYLAE-----RDCSVQRRHQKVLEEAPAPGLSEET 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            K +   A  A QAI   G    +FL+D +    F++E+N 
Sbjct: 252 RKAMGEAAVRAAQAINYVGAGTVEFLYD-VDGSFFFMEMNT 291


>gi|297571589|ref|YP_003697363.1| carbamoyl-phosphate synthase, large subunit [Arcanobacterium
           haemolyticum DSM 20595]
 gi|296931936|gb|ADH92744.1| carbamoyl-phosphate synthase, large subunit [Arcanobacterium
           haemolyticum DSM 20595]
          Length = 1063

 Score = 75.5 bits (185), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 52/312 (16%), Positives = 111/312 (35%), Gaps = 40/312 (12%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNV 57
           G   E + S  S  A    + DAG++   I         D   +  L    L  +   N+
Sbjct: 560 GQGVEFDYS--SVHAI-KTIRDAGYEAIIINDNPETVSTDYTTADKLYFEPLTVEDVLNI 616

Query: 58  L-HGNF--------GEDGL-VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV 107
           + H           G+  + +   L    +    + + A   + D+   ++++S+  +P 
Sbjct: 617 VDHEQPIGVITSLGGQTAINLAGPLAARGVTLLGTSLEAINRAEDRDEFERLLSTLNIPQ 676

Query: 108 CPSILVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
            P   V      +     +  P +++P        + ++  D+ +   L Q    +    
Sbjct: 677 APGKAVTNVEDGIAVAAEVGYPVLVRPSFVLGGRAMRIVGSDEQLHHYLSQGLEIDTDRP 736

Query: 166 LLIEQYVDGIELTCGVMGDAS---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPL 221
           +L+++Y+ G EL    + D     +      V  +  +S        +S  V P   +  
Sbjct: 737 VLVDKYISGKELEVDAICDGQDVFVPGIMELVEHTGVHS-------GDSISVYPTFSVSN 789

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYA 281
            +  ++        +AIG  G+    F+ D    KV+ +E+N +   T     P ++   
Sbjct: 790 KVKGDILAYTKALGKAIGIVGLFNVQFIVDE-DEKVYIIEVNPRSSRT----VPFLSKVT 844

Query: 282 GYSFRELLLWMV 293
           GY    +   ++
Sbjct: 845 GYGLPAIATRVI 856



 Score = 69.8 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 51/269 (18%), Positives = 102/269 (37%), Gaps = 32/269 (11%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL++ G++V  +         D D              V  ++   +PD     + G  G
Sbjct: 36  ALKEEGYRVILVNSNPATIMTDSDVADRVYMEPLTLEYVAKIIRKERPDAIVPGIGGQTG 95

Query: 64  EDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFT 117
            +  +Q     IL    +    +   +   + D+ + KQ+  S G PV  S +       
Sbjct: 96  LNLAMQLEKKGILAECGVQLLGTPSESIERAEDREQFKQLCESIGEPVIASDIAYTVEEA 155

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IE 176
           + +   I  P V++P       G       + +   ++ +   +   Q+LIE+ + G  E
Sbjct: 156 LAAAERIGYPVVLRPAFTLGGTGGGFAHSPEELTEMMVNALHLSPVHQVLIEKSIVGYKE 215

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAH 235
           +   VM DAS     I   ++      +   + +S  V PA  +     + +++ AF   
Sbjct: 216 IEFEVMRDASDHTICICSMEN---IDPVGVHTGDSVVVAPALSLNESDLEMLKQSAFKLI 272

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +++   G     F  +P + + F +E+N 
Sbjct: 273 RSLKIEGGCNVQFALNPTTSEYFLIEVNP 301


>gi|16126127|ref|NP_420691.1| acetyl-CoA carboxylase biotin carboxylase subunit [Caulobacter
           crescentus CB15]
 gi|221234898|ref|YP_002517334.1| acetyl-CoA carboxylase biotin carboxylase subunit [Caulobacter
           crescentus NA1000]
 gi|13423331|gb|AAK23859.1| acetyl-CoA carboxylase, biotin carboxylase [Caulobacter crescentus
           CB15]
 gi|220964070|gb|ACL95426.1| biotin carboxylase [Caulobacter crescentus NA1000]
          Length = 448

 Score = 75.5 bits (185), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 89/220 (40%), Gaps = 18/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---- 109
            +H  +G   E+     I+      +         +  DK+ +KQ V   G+PV P    
Sbjct: 77  AIHPGYGFLSENARFAEIVGAHGFTFIGPKPEHIRMMGDKITAKQAVKDAGIPVVPGSDG 136

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGDQ 165
            +       ++   I  P +IK   GG   G+ V +  + +   +     ++ +    D 
Sbjct: 137 GVSTEEEAFEAAEKIGFPVLIKAAAGGGGRGMKVAQTREDLAEAVSTARAEARAAFGDDT 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+Y+     +   V+ D+  +V  +        S + ++  +      PA +  +  
Sbjct: 197 VYMERYLQKPRHIELQVIADSHGNVVHLGERD---CSLQRRHQKVLEEAPSPA-LSAEGR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            ++ ++   A +AIG  G+   +FL+   + + F++E+N 
Sbjct: 253 AKIGKVVVDAVKAIGYLGVGTIEFLW--ENDEFFFIEMNT 290


>gi|121606280|ref|YP_983609.1| acetyl-CoA carboxylase, biotin carboxylase [Polaromonas
           naphthalenivorans CJ2]
 gi|120595249|gb|ABM38688.1| acetyl-CoA carboxylase, biotin carboxylase [Polaromonas
           naphthalenivorans CJ2]
          Length = 449

 Score = 75.5 bits (185), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 79/222 (35%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +      +  L  DK+ +KQ +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAERVEKSGFKFIGPSPESIRLMGDKVSAKQTMLKAGVPCVPGSEG 136

Query: 112 ---LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
                  F       I  P +IK   GG   G+ V+  + ++   +     ++ +     
Sbjct: 137 ALPADPAFIKRIAKQIGYPVIIKAAGGGGGRGMRVVHTEAALLNAVQTTKAEAGAAFGNP 196

Query: 165 QLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
           ++ +E+++ +   +   ++ D   +   +            K          PA  IP  
Sbjct: 197 EVYMEKFLQNPRHIEIQILADQFKNAVWLGERDCSMQRRHQK-----VIEEGPAPGIPRK 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + + +      A +  G RG    +FL+     + +++E+N 
Sbjct: 252 LIERIGARCVTAVKKFGYRGAGTFEFLY--EDGEFYFIEMNT 291


>gi|168213499|ref|ZP_02639124.1| carbamoyl-phosphate synthase, large subunit [Clostridium
           perfringens CPE str. F4969]
 gi|170715072|gb|EDT27254.1| carbamoyl-phosphate synthase, large subunit [Clostridium
           perfringens CPE str. F4969]
          Length = 1067

 Score = 75.5 bits (185), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 33/232 (14%), Positives = 87/232 (37%), Gaps = 19/232 (8%)

Query: 67  LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV--PVCPSILVNRFTMDSQHLI 124
            +   L+   IP   +      L+ D+ +   ++    +  P    +      ++    +
Sbjct: 644 KLAKFLKEKNIPTLGTTSDQIDLAEDREQFDDLLERLNIARPKGKGVWSLEEGLEEARRL 703

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
             P +++P       G+ +   ++ +   L  +   +  + +LI++Y+ G E+    + D
Sbjct: 704 GFPILVRPSFVLGGQGMEITHDEEELTYYLTNAFEKDSKNPILIDKYLMGREIEVDAISD 763

Query: 185 AS---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGC 240
                +      + ++  +S        +S  + PA  I   I ++V         +IG 
Sbjct: 764 GEDVLVPGIMEHLERAGVHS-------GDSITMYPAQNISDKIKEDVLDYTKKLALSIGI 816

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +G+    F+      K++ +E+N +   T     P ++  +G    ++   +
Sbjct: 817 KGMINIQFI--EFEGKLYVIEVNPRASRT----VPYISKVSGVPIVDIATRI 862



 Score = 62.1 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 51/290 (17%), Positives = 106/290 (36%), Gaps = 41/290 (14%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQID-------VDRSVGL--------------V 45
           G ++E + S   G     AL++ G +V  ++        D+ +                V
Sbjct: 21  GQAAEFDYS---GTQACQALKEEGIEVVLVNSNPATIMTDKEIADKVYLEPLTVEFVEKV 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGL-------VQAILELLEIPYTHSGILASALSMDKMRSKQ 98
           +   +PD   ++L G  G+ GL        + IL+   +    + I +     D+   + 
Sbjct: 78  IEKERPD---SLLAGMGGQTGLNLAVELYEKGILDKYNVKVIGTSIESIKEGEDRELFRD 134

Query: 99  VVSSCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
           +++    PV  S ++      +     I  P +++P       G  +   ++ +   L  
Sbjct: 135 MMNRINQPVIQSEIITDLDSGIAFARKIGYPVIVRPAYTLGGTGGGIANNEEELIETLTS 194

Query: 157 SSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215
               +   Q+L+E+ V G  E+   VM D            +      +   + +S  V 
Sbjct: 195 GLQLSTIGQVLLEKSVKGWKEIEYEVMRD---SFGNCITVCNMENIDPVGIHTGDSIVVA 251

Query: 216 PAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           P++ +    Y+ ++  +     A+G  G     F  +P S +   +EIN 
Sbjct: 252 PSQTLSDKEYQMLRSASIDIINAVGIEGGCNVQFALNPHSFEYAVIEINP 301


>gi|86158473|ref|YP_465258.1| phosphoribosylglycinamide formyltransferase 2 [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|123498050|sp|Q2IJJ5|PURT_ANADE RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|85774984|gb|ABC81821.1| formate-dependent phosphoribosylglycinamide formyltransferase
           [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 387

 Score = 75.5 bits (185), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 46/247 (18%), Positives = 94/247 (38%), Gaps = 26/247 (10%)

Query: 33  VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
           VS +D   ++  ++A  +PD+    +     E   +QA  E   +    S   A+     
Sbjct: 49  VSMLD-GAALDALVAKHRPDVIVPEIEAIRTE--RLQAY-EAQGVQVVPSARAAAFTMNR 104

Query: 93  KMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150
           +          G+        +       + H I  P V+KPL   S  G  V++ +  +
Sbjct: 105 RAIRDLAARELGLATARYAYASTPEAFRAAVHEIGLPCVVKPLMSSSGKGQSVVRAEGDL 164

Query: 151 PLDLLQSSSWNHGD--QLLIEQYVDGIE----LTCGVMGDASLDVTEIAVPKSDFYSYEL 204
                 + S   GD  ++++E+++        LT       +L    I   + +   Y+ 
Sbjct: 165 EAAWAYAMSGTRGDLREVIVEEFIPFDSEITLLTVTQRRGETLFCPPIG-HRQERGDYQE 223

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +         P  +P  + +E +R+A    +A+G  GI   +F       ++++ E++ 
Sbjct: 224 SW--------QPHPVPPPLLEEARRMAGAVTRALGGAGIFGVEFFLAK--DRIWFSELSP 273

Query: 265 QP---GM 268
           +P   GM
Sbjct: 274 RPHDTGM 280


>gi|71065659|ref|YP_264386.1| acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha /
           biotin carboxylase [Psychrobacter arcticus 273-4]
 gi|71038644|gb|AAZ18952.1| acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha /
           biotin carboxylase [Psychrobacter arcticus 273-4]
          Length = 448

 Score = 75.5 bits (185), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 83/222 (37%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+    A++E   + +            DK+ +K+ ++  GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAALVEDSGLTFIGPTADNIRNMGDKVEAKKQMTMAGVPCVPGSDG 136

Query: 112 ---LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGD 164
                +   +     +  P +IK   GG   G+ V++K+  +   +     ++ +     
Sbjct: 137 ALPADSEQVIKIASDVGYPVIIKAASGGGGRGMRVVEKETDLLSAISMTQTEAKANFGSA 196

Query: 165 QLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+Y+     +   VM D   +   +            K          PA  I  +
Sbjct: 197 IVYLEKYLQAPRHIEVQVMSDTHGNAIYLGERDCSMQRRHQK-----VIEEAPAPGITEE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +++ +    A + +  RG    +FL+   + + F++E+N 
Sbjct: 252 QRQKIGQACVTACEQMQYRGAGTFEFLY--ENGEFFFIEMNT 291


>gi|74201750|dbj|BAE28484.1| unnamed protein product [Mus musculus]
          Length = 1179

 Score = 75.5 bits (185), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 31/233 (13%), Positives = 75/233 (32%), Gaps = 17/233 (7%)

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
            +  V      D      +G   E        +   + +            DK+ ++ + 
Sbjct: 102 DIIKVAKENGVDAVHPG-YGFLSERADFAQACQDAGVRFIGPSPEVVRKMGDKVEARAIA 160

Query: 101 SSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL---- 152
            + GVPV P     I       +  +    P + K   GG   G+ V+   + +      
Sbjct: 161 IAAGVPVVPGTDSPISSLHEAHEFSNTFGFPIIFKAAYGGGGRGMRVVHSYEELEENYTR 220

Query: 153 DLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
              ++ +      L +E++++    +   ++GD   ++  +            K      
Sbjct: 221 AYSEALAAFGNGALFVEKFIEKPRHIEVQILGDQYGNILHLYERDCSIQRRHQK-----V 275

Query: 212 THVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
             + PA  +   +   +   +    + +G       +FL D   +  +++E+N
Sbjct: 276 VEIAPATHLDPQLRSRLTSDSVKLAKQVGYENAGTVEFLVDKHGKH-YFIEVN 327


>gi|148252265|ref|YP_001236850.1| putative biotin carboxylase [Bradyrhizobium sp. BTAi1]
 gi|146404438|gb|ABQ32944.1| putative biotin carboxylase [Bradyrhizobium sp. BTAi1]
          Length = 651

 Score = 75.5 bits (185), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 37/219 (16%), Positives = 79/219 (36%), Gaps = 22/219 (10%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
           +G   E+           + +      A A   +K  +K ++   GVP  P         
Sbjct: 86  YGFLAENEDFAQACTDAGLVFIGPSPDAIAAMGNKAGAKDIMLRAGVPCVPGYQGEDQND 145

Query: 119 DS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH-----GDQLLIE 169
           ++       I  P +IK + GG   G+ ++    +  LD+L+S+            +++E
Sbjct: 146 EAMLREARRIGFPVMIKAVAGGGGRGMRLVSDADAF-LDMLRSARSEAAAAFGDGTVILE 204

Query: 170 QYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP---LDIYK 225
           + + +   +   V GD+  +   +            K        +  A  P    ++  
Sbjct: 205 KAIANPRHIEIQVFGDSHGNAVHLGERDCSVQRRHQK-------LIEEAPSPAVGPELRA 257

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +  +A  A +A+   G    +FL D    + +++E+N 
Sbjct: 258 RMGAVAVQAVKALVYEGAGTLEFLLDG-DGQFYFMEMNT 295


>gi|327190843|gb|EGE57908.1| Carbamoyl-phosphate synthase L chain ATP-binding protein [Rhizobium
           etli CNPAF512]
          Length = 621

 Score = 75.5 bits (185), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 37/203 (18%), Positives = 77/203 (37%), Gaps = 19/203 (9%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM----DSQHLISPPYVIK 131
            + +  +  +A      K  +KQ++ + GVPV P  L    +          I  P +IK
Sbjct: 99  GMIWVGAPPIAIRAMGLKDAAKQLMQAAGVPVTPGYLGPDQSEARLTAEADAIGYPVLIK 158

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQLLIEQYV-DGIELTCGVMGDAS 186
            + GG   G+  + + +     L     ++++    D++LIE+Y+ +   +   V  D S
Sbjct: 159 AVAGGGGKGMRRVDRREDFAELLASCRREAAASFGDDRVLIERYIANPRHIEVQVFADKS 218

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISR 245
            +               L+          PA  +       +   A  A +A+   G   
Sbjct: 219 GNCV-----HLFERDCSLQRRHQKVIEEAPAPGLDAATRAAICEAAVKAARAVNYVGAGT 273

Query: 246 SDFLFDPLSR----KVFWLEINV 264
            +F+ D  +     +++++E+N 
Sbjct: 274 IEFIADASAGLDPDRIWFMEMNT 296


>gi|296110202|ref|YP_003620583.1| Acetyl-CoA carboxylase, biotin carboxylase [Leuconostoc kimchii
           IMSNU 11154]
 gi|295831733|gb|ADG39614.1| Acetyl-CoA carboxylase, biotin carboxylase [Leuconostoc kimchii
           IMSNU 11154]
          Length = 446

 Score = 75.5 bits (185), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 83/220 (37%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      +E + I +        A   DK +++Q +S  GVP+      
Sbjct: 83  AIHPGYGFLSENPNFAKQVEEMGIVFIGPTSEVIAQMGDKEKARQFMSEAGVPIVSGSDS 142

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQS----IPLDLLQSSSWNHGDQ 165
               +D        I  P ++K + GG   G+ ++    S      +   +  +     +
Sbjct: 143 FFEDVDIGFKQAKKIGYPVMLKSVAGGGGKGMRLVSNQDSFKSLFEVAQSEIMASVGDPR 202

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E++V     +   ++GD   +   +        S+  K      +H+    +     
Sbjct: 203 MYLEKFVSKPRHIEVQILGDGLGNAIVLGERDCTIQSHHQKVIEEAPSHL----LDETTR 258

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K++  ++  A + +  R     +FL+     K +++E+N 
Sbjct: 259 KKMLAVSLNAVKRMAYRSAGTFEFLYQGP-GKFYFMEMNT 297


>gi|464506|sp|Q05920|PYC_MOUSE RecName: Full=Pyruvate carboxylase, mitochondrial; AltName:
           Full=Pyruvic carboxylase; Short=PCB; Flags: Precursor
 gi|293744|gb|AAA39737.1| pyruvate carboxylase [Mus musculus]
 gi|32822907|gb|AAH55030.1| Pcx protein [Mus musculus]
          Length = 1178

 Score = 75.5 bits (185), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 31/233 (13%), Positives = 75/233 (32%), Gaps = 17/233 (7%)

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
            +  V      D      +G   E        +   + +            DK+ ++ + 
Sbjct: 101 DIIKVAKENGVDAVHPG-YGFLSERADFAQACQDAGVRFIGPSPEVVRKMGDKVEARAIA 159

Query: 101 SSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL---- 152
            + GVPV P     I       +  +    P + K   GG   G+ V+   + +      
Sbjct: 160 IAAGVPVVPGTDSPISSLHEAHEFSNTFGFPIIFKAAYGGGGRGMRVVHSYEELEENYTR 219

Query: 153 DLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
              ++ +      L +E++++    +   ++GD   ++  +            K      
Sbjct: 220 AYSEALAAFGNGALFVEKFIEKPRHIEVQILGDQYGNILHLYERDCSIQRRHQK-----V 274

Query: 212 THVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
             + PA  +   +   +   +    + +G       +FL D   +  +++E+N
Sbjct: 275 VEIAPATHLDPQLRSRLTSDSVKLAKQVGYENAGTVEFLVDKHGKH-YFIEVN 326


>gi|86134885|ref|ZP_01053467.1| acetyl-CoA carboxylase, biotin carboxylase [Polaribacter sp.
           MED152]
 gi|85821748|gb|EAQ42895.1| acetyl-CoA carboxylase, biotin carboxylase [Polaribacter sp.
           MED152]
          Length = 446

 Score = 75.5 bits (185), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 82/221 (37%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-SIL 112
            +H  +G   E+     + E   I +  +         DK  +K  + + GVP  P S  
Sbjct: 77  AIHPGYGFLSENAKFSNLCEEHNIKFIGATGKMIDQMGDKANAKSTMIAAGVPCVPGSEG 136

Query: 113 VNRFTMDSQHLI---SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS-----SSWNHGD 164
           V +   D + L      P ++K   GG   G+  + K + +      +     +++ + D
Sbjct: 137 VIKDFEDCEKLAVETGYPVMLKASAGGGGKGMRAVWKPEDLKDAWDSARQESKAAFGNDD 196

Query: 165 QLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
             + E+ ++    +   ++GD+      ++           K     +       +  ++
Sbjct: 197 MYM-EKLIEEPRHIEIQIVGDSFGKACHLSERDCSVQRRHQK----LTEETPSPFMTDEL 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             ++   A  A + IG  G    +FL D   R  +++E+N 
Sbjct: 252 RDKMGEAAVKAAEYIGYEGAGTVEFLVDKH-RNFYFMEMNT 291


>gi|126175717|ref|YP_001051866.1| carbamoyl-phosphate synthase L chain ATP-binding [Shewanella baltica
            OS155]
 gi|304411135|ref|ZP_07392750.1| Carbamoyl-phosphate synthase L chain ATP-binding [Shewanella baltica
            OS183]
 gi|307306430|ref|ZP_07586173.1| Carbamoyl-phosphate synthase L chain ATP-binding [Shewanella baltica
            BA175]
 gi|125998922|gb|ABN62997.1| Carbamoyl-phosphate synthase L chain, ATP-binding [Shewanella baltica
            OS155]
 gi|304350328|gb|EFM14731.1| Carbamoyl-phosphate synthase L chain ATP-binding [Shewanella baltica
            OS183]
 gi|306910721|gb|EFN41149.1| Carbamoyl-phosphate synthase L chain ATP-binding [Shewanella baltica
            BA175]
          Length = 1517

 Score = 75.5 bits (185), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 85/221 (38%), Gaps = 18/221 (8%)

Query: 57   VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
             LH   G   E     A+     + +    + +     +K  + +   +  VPV P    
Sbjct: 1018 ALHPGIGFLSESPQFAALCVNNGVNFVGPSVHSMTTMGNKSNAIKTSQAQNVPVVPGSHG 1077

Query: 111  -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI-----PLDLLQSSSWNHGD 164
             +      ++    I  P ++K ++GG   GI V+K+ + +           ++++ +GD
Sbjct: 1078 ILTNAEQAINVASEIGYPVLLKAVQGGGGKGIQVVKRPEDMIGLFQKTATEAAAAFGNGD 1137

Query: 165  QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
              L E+YV     +   ++ D   +   + +          K    + + +    +P ++
Sbjct: 1138 LYL-EKYVTSLRHIEVQLLRDKFGNAKVLGLRDCSVQRNNQKVVEESGSTM----LPDEL 1192

Query: 224  YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             ++V         A    G    +F+++  + +V+++E+N 
Sbjct: 1193 KRQVLAYTRALGDATDYMGAGTVEFIYNLDANEVYFMEMNT 1233


>gi|57529595|ref|NP_001006551.1| methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial
           [Gallus gallus]
 gi|53132373|emb|CAG31898.1| hypothetical protein RCJMB04_13e11 [Gallus gallus]
          Length = 713

 Score = 75.5 bits (185), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 82/221 (37%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H  +G   E+     + +   I +      A      K  SK ++S+ GVPV      
Sbjct: 115 AIHPGYGFLSENTEFAELCKQEGIIFIGPPSSAIRDMGIKSTSKAIMSAAGVPVVEGYHG 174

Query: 113 ---VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS----IPLDLLQSSSWNHGDQ 165
               ++   +    I  P +IK ++GG   G+ +   ++     +     ++    + D 
Sbjct: 175 EDQSDQCLKEHAMRIGYPVMIKAVRGGGGKGMRIAHSEKEFLDQLESARREAKKSFNDDA 234

Query: 166 LLIEQYVDGI-ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDI 223
           +LIE++VD    +   V GD   +   +           ++          P   I  ++
Sbjct: 235 MLIEKFVDNPGHVEVQVFGDQHGNAVYL-----FERDCSVQRRHQKIIEEAPGPGINPEV 289

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            K +   A  A +A+   G    +F+ D      +++E+N 
Sbjct: 290 RKRLGEAAVKAAKAVNYVGAGTVEFIMDSQHN-FYFMEMNT 329


>gi|318041817|ref|ZP_07973773.1| carbamoyl phosphate synthase large subunit [Synechococcus sp.
           CB0101]
          Length = 1097

 Score = 75.5 bits (185), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 60/283 (21%), Positives = 98/283 (34%), Gaps = 44/283 (15%)

Query: 18  SGKACASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLA------------FN 56
           SG     AL   GF+V  +         D D +    +  L PD+               
Sbjct: 29  SGTQACKALRAEGFEVVLVNSNPASIMTDPDMADRTYIEPLTPDVVRRVIEQERPDALLP 88

Query: 57  VLHG--------NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
            + G           +DG     LE   +    + + A   + D+   KQ +   GV VC
Sbjct: 89  TMGGQTALNLAVTLAKDGT----LEQYGVELIGANLQAIEKAEDRDLFKQAMERIGVAVC 144

Query: 109 PS---ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
           PS     +       + + S P +I+P       G  +    +      L     +  +Q
Sbjct: 145 PSGIATTLEEAEAVGEQIGSYPRIIRPAFTLGGSGGGIAYNPEEFRAICLSGLDASPVNQ 204

Query: 166 LLIEQYVDG-IELTCGVMGDASL-DVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
           +LIEQ + G  E    VM D +   V   ++   D           +S  V PA+ +   
Sbjct: 205 ILIEQSLLGWKEFELEVMRDTADNVVIVCSIENLDPMGVHT----GDSITVAPAQTLTDR 260

Query: 223 IYKEVQRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
            Y+ ++  A    + IG   G S   F  +P +  V  +E+N 
Sbjct: 261 EYQRLRDQAIAIIREIGVDTGGSNIQFAINPANGDVIVIEMNP 303



 Score = 49.3 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 47/300 (15%), Positives = 100/300 (33%), Gaps = 41/300 (13%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ------ 69
           AL+  GF    +         D D S  L    L  +   NV+     E  +VQ      
Sbjct: 603 ALQAEGFATVMVNSNPETVSTDYDTSDRLYFEPLTFEDVLNVIEAEKPEGVIVQFGGQTP 662

Query: 70  -----AILELLEIPYT--------HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116
                 +L  LE P           +   +   + D+ + + ++    +    + L    
Sbjct: 663 LKLAIPLLRWLESPAGQATGTRIWGTSPESIDTAEDREQFEAILRKLDIRQPRNGLARSE 722

Query: 117 TMDS--QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD- 173
                    +  P V++P        + V+  ++ +   + ++ +      +LI+QY++ 
Sbjct: 723 AEARVIAERVGYPVVVRPSYVLGGRAMEVVFGEEELNRYMSEAVNVEPDHPVLIDQYLEN 782

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAF 232
             E+    + DA+  V    + +   +       S +S   LPA  +       +++ + 
Sbjct: 783 ATEVDVDALCDATGRVVIGGLME---HIEPAGVHSGDSACALPAVSLEQQALATIRQWSE 839

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
               A+   G+    F        V+ +E N +   T     P +A   G    ++   +
Sbjct: 840 ALALALQVNGLINLQFAI--KDGDVYIIEANPRASRT----VPFVAKATGVPLAKVASQI 893


>gi|260597978|ref|YP_003210549.1| Urea amidolyase [Cronobacter turicensis z3032]
 gi|260217155|emb|CBA30979.1| Urea amidolyase [Cronobacter turicensis z3032]
          Length = 1229

 Score = 75.5 bits (185), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 35/198 (17%), Positives = 72/198 (36%), Gaps = 14/198 (7%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---QHLISPPYVIKP 132
            + +             K R++ + +  GVP+ P   + R   ++      I  P ++K 
Sbjct: 126 GLVFIGPTPQQIGDFGLKHRARALAAQAGVPMTPGSGLLRSLEEATQAAADIGYPVMLKT 185

Query: 133 LKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQLLIEQYV-DGIELTCGVMGDASL 187
             GG  +G+       S+         Q   +   D + IE+++     L   ++GD   
Sbjct: 186 TAGGGGIGLTRCDDAPSLAQAWESVRRQGQQFFSDDGVFIEKFISRARHLEVQILGDG-- 243

Query: 188 DVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRS 246
              E  V         L+  +       PA  +P    + +   A    +++  R     
Sbjct: 244 ---EGYVAALGERDCSLQRRNQKVVEETPAPGLPQATREALHAAAAALGESVNYRSAGTV 300

Query: 247 DFLFDPLSRKVFWLEINV 264
           +F++D  S + ++LE+N 
Sbjct: 301 EFIYDAGSDRFWFLEVNT 318


>gi|241895848|ref|ZP_04783144.1| phosphoribosylamine--glycine ligase [Weissella paramesenteroides
           ATCC 33313]
 gi|241870891|gb|EER74642.1| phosphoribosylamine--glycine ligase [Weissella paramesenteroides
           ATCC 33313]
          Length = 410

 Score = 75.5 bits (185), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 44/213 (20%), Positives = 77/213 (36%), Gaps = 10/213 (4%)

Query: 27  EDAGFKVSQI-DVDRSVGLVLAHLKP-DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84
           + +G +   I + D     + A  +P DL F            +   L    I       
Sbjct: 39  QASGIQTVAIAENDFEKVALFAEQQPIDLVFVGPEAPLA--SGIVDFLTAKGIRVFGPHQ 96

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYVIKPLKGGSSLGII 142
            A+ L  DK  +K+ +S   VP         F    +    +S P VIK        G+ 
Sbjct: 97  AAARLESDKQFAKEFMSRNHVPTAAFASFKDFEQAFNYAQKLSLPVVIKENGLAGGKGVR 156

Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT-EIAVPKSDFYS 201
           ++K+   + L L +S      DQ+L+E+Y++G E +  +       V   I+      Y+
Sbjct: 157 IVKEADELALALRESL--QKSDQILVEEYLEGEEFSLMLFVGGPKPVILPISQDHKKIYA 214

Query: 202 YELKYSSLN-STHVLPAKIPLDIYKEVQRLAFL 233
            E   ++     +     I  DI   V++    
Sbjct: 215 GETGPNTGGMGAYSPVPHITDDIIARVEQTVVK 247


>gi|194097643|ref|YP_002000681.1| acetyl-CoA carboxylase, biotin carboxylase [Neisseria gonorrhoeae
           NCCP11945]
 gi|240013356|ref|ZP_04720269.1| acetyl-CoA carboxylase, biotin carboxylase [Neisseria gonorrhoeae
           DGI18]
 gi|240079938|ref|ZP_04724481.1| acetyl-CoA carboxylase, biotin carboxylase [Neisseria gonorrhoeae
           FA19]
 gi|240114891|ref|ZP_04728953.1| acetyl-CoA carboxylase, biotin carboxylase [Neisseria gonorrhoeae
           PID18]
 gi|240117095|ref|ZP_04731157.1| acetyl-CoA carboxylase, biotin carboxylase [Neisseria gonorrhoeae
           PID1]
 gi|240120429|ref|ZP_04733391.1| acetyl-CoA carboxylase, biotin carboxylase [Neisseria gonorrhoeae
           PID24-1]
 gi|240122731|ref|ZP_04735687.1| acetyl-CoA carboxylase, biotin carboxylase [Neisseria gonorrhoeae
           PID332]
 gi|240127433|ref|ZP_04740094.1| acetyl-CoA carboxylase, biotin carboxylase [Neisseria gonorrhoeae
           SK-93-1035]
 gi|260441293|ref|ZP_05795109.1| acetyl-CoA carboxylase, biotin carboxylase [Neisseria gonorrhoeae
           DGI2]
 gi|268596078|ref|ZP_06130245.1| acetyl-CoA carboxylase [Neisseria gonorrhoeae FA19]
 gi|268600548|ref|ZP_06134715.1| acetyl-CoA carboxylase [Neisseria gonorrhoeae PID18]
 gi|268602781|ref|ZP_06136948.1| acetyl-CoA carboxylase [Neisseria gonorrhoeae PID1]
 gi|268681330|ref|ZP_06148192.1| acetyl-CoA carboxylase [Neisseria gonorrhoeae PID332]
 gi|268685807|ref|ZP_06152669.1| acetyl-CoA carboxylase [Neisseria gonorrhoeae SK-93-1035]
 gi|291044649|ref|ZP_06570358.1| acetyl-CoA carboxylase [Neisseria gonorrhoeae DGI2]
 gi|193932933|gb|ACF28757.1| acetyl-CoA carboxylase, biotin carboxylase [Neisseria gonorrhoeae
           NCCP11945]
 gi|268549866|gb|EEZ44885.1| acetyl-CoA carboxylase [Neisseria gonorrhoeae FA19]
 gi|268584679|gb|EEZ49355.1| acetyl-CoA carboxylase [Neisseria gonorrhoeae PID18]
 gi|268586912|gb|EEZ51588.1| acetyl-CoA carboxylase [Neisseria gonorrhoeae PID1]
 gi|268621614|gb|EEZ54014.1| acetyl-CoA carboxylase [Neisseria gonorrhoeae PID332]
 gi|268626091|gb|EEZ58491.1| acetyl-CoA carboxylase [Neisseria gonorrhoeae SK-93-1035]
 gi|291011543|gb|EFE03539.1| acetyl-CoA carboxylase [Neisseria gonorrhoeae DGI2]
          Length = 453

 Score = 75.5 bits (185), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 82/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         L  DK+ +K  + + GVP  P    
Sbjct: 77  AVHPGYGFLAENADFAEQVEQSGFTFIGPKPDTIRLMGDKVSAKHAMIAAGVPCVPGSDG 136

Query: 112 LVNRFTMD---SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
            +     +       +  P +IK   GG   G+ V++K + +   +     ++ +     
Sbjct: 137 ALPDDDAEILKIADKVGYPVIIKASGGGGGRGMRVVEKKEDLLQSVEMTKAEAGAAFGNP 196

Query: 165 QLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+Y+     +   V+ D   +   +A          L+          PA  I  +
Sbjct: 197 MVYMERYLQRPRHVEIQVLADEHGNAVYLAE-----RDCSLQRRHQKVIEEAPAPFIDEE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             K++ +    A + IG RG    +FL+     + F++E+N 
Sbjct: 252 ARKKIGKACTDACKRIGYRGAGTFEFLY--EDGEFFFIEMNT 291


>gi|182420016|ref|ZP_02951250.1| carbamoyl-phosphate synthase, large subunit [Clostridium butyricum
           5521]
 gi|237669515|ref|ZP_04529495.1| carbamoyl-phosphate synthase, large subunit [Clostridium butyricum
           E4 str. BoNT E BL5262]
 gi|182376053|gb|EDT73640.1| carbamoyl-phosphate synthase, large subunit [Clostridium butyricum
           5521]
 gi|237654959|gb|EEP52519.1| carbamoyl-phosphate synthase, large subunit [Clostridium butyricum
           E4 str. BoNT E BL5262]
          Length = 1070

 Score = 75.5 bits (185), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 42/289 (14%), Positives = 102/289 (35%), Gaps = 32/289 (11%)

Query: 22  CASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLV---- 68
           C  AL+  G +   +         D D S  L    L  +   N++      DG++    
Sbjct: 580 CVKALKKLGIETIIVNNNPETVSTDFDVSDKLYFEPLTEEDVLNIIE-KERPDGVILQFG 638

Query: 69  -QAILELLE------IPYTHSGILASALSMDKMRSKQVVSSCGV--PVCPSILVNRFTMD 119
            Q  ++L        +    +      ++ D+ +  +++   G+  P    I      ++
Sbjct: 639 GQTAIKLANFLKEQKVVTLGTTADQIDMAEDREKFDELLEKLGITRPKGKGIWSLEEGLE 698

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
               +  P +++P       G+ +   ++ +   L  + + +  + +LI++Y+ G E+  
Sbjct: 699 EARRLGFPVLVRPSYVIGGQGMEITHDEEELTFYLENAFAKDKKNPILIDKYLMGREIEV 758

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
             + D    +    +   +       +S  + T      I  D+   +          IG
Sbjct: 759 DAISDGENILIPGIMEHLERAGV---HSGDSVTMYPSQNITDDMKGRILDYTKKLALEIG 815

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
            +G+    F+       ++ +E+N +   T     P ++  +G    +L
Sbjct: 816 IKGMINIQFI--EFEGNLYVIEVNPRASRT----VPYISKVSGVPIVDL 858



 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 61/318 (19%), Positives = 118/318 (37%), Gaps = 45/318 (14%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQID-------VDRSVGL--------------V 45
           G ++E + S   G     AL+  G +V  ++        D+ V                V
Sbjct: 21  GQAAEFDYS---GTQACEALKSEGIEVVLVNSNPATIMTDKEVADKIYLEPLTLEFLEKV 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLV-------QAILELLEIPYTHSGILASALSMDKMRSKQ 98
           +A  KPD   ++L G  G+ GL          IL+   +    + I +     D+   + 
Sbjct: 78  IAKEKPD---SLLAGMGGQTGLNLAVELYDAGILDKYNVRVIGTSIESIKEGEDRELFRN 134

Query: 99  VVSSCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
           +++  G PV  S +V      +D  + I  P +++P       G  +   ++ +   L  
Sbjct: 135 MMNRIGEPVIKSEIVTDLQAGIDFANKIGYPVIVRPAYTLGGSGGGIADDEEELRTILES 194

Query: 157 SSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215
               +   Q+L+E+ V G  E+   VM D            +      +   + +S  V 
Sbjct: 195 GLQLSTIGQVLLEKSVKGWKEIEYEVMRD---SYGNCITVCNMENIDPVGIHTGDSIVVA 251

Query: 216 PAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274
           P++ +    Y+ ++  +     A+G  G     F  +P + +   +EIN  P ++  S  
Sbjct: 252 PSQTLSDKEYQMLRTASINIINAVGIEGGCNVQFSLNPNTFEYAVIEIN--PRVSRSS-- 307

Query: 275 PEMAAYAGYSFRELLLWM 292
              +   GY   +L   +
Sbjct: 308 ALASKATGYPIAKLAAKI 325


>gi|146297226|ref|YP_001180997.1| carbamoyl-phosphate synthase, large subunit [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145410802|gb|ABP67806.1| carbamoyl-phosphate synthase large subunit [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 1077

 Score = 75.5 bits (185), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 30/232 (12%), Positives = 84/232 (36%), Gaps = 18/232 (7%)

Query: 68  VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--SILVNRFTMDSQHLIS 125
           + + L    +    + + +  ++ D+ +   ++ S G+P     S       +     I 
Sbjct: 646 MASYLAKNGVKILGTSMESIDIAEDRDKFLNLLKSLGIPYPQGGSAYNLEDAIKVAEQIG 705

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            P +++P        + ++   Q +   +  +   +    +LI++Y+ G E     + D 
Sbjct: 706 YPVLVRPSYVLGGRAMEIVYNRQELERYIKAAMEISIKHPILIDKYIVGKEAEVDGISDG 765

Query: 186 S---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCR 241
               +      + ++  +S        +S  V P   +   + +++        +A+   
Sbjct: 766 EDVLIPGIMEHIERAGVHS-------GDSMAVFPPHTLSERVKEKIVDYTIKLARALKVV 818

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           G+    F+ D     V+ +E+N +   T     P ++   G    ++   ++
Sbjct: 819 GLFNIQFVIDKDEN-VYVIEVNPRASRT----VPILSKVTGIPMIKIATKLI 865



 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 47/288 (16%), Positives = 106/288 (36%), Gaps = 37/288 (12%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFN---------- 56
           G ++E + S   G     AL++ G +V  ++ + +  +    +  D  +           
Sbjct: 21  GQAAEFDYS---GTQACRALKEEGIEVVLVNSNPATIMTDTEI-ADRVYIEPISVDYIEE 76

Query: 57  ---------VLHGNFGEDG-------LVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
                    +L G  G+             +L+   +    + +     + D+   K+ +
Sbjct: 77  IIKKERPQGLLAGLGGQTALNMAFELAEAGMLDKYNVKLLGTSLETIKKAEDRELFKKTM 136

Query: 101 SSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS 158
              G PV  SI+ +     ++    +  P +++P       G  +   ++ +     +  
Sbjct: 137 LEIGEPVPKSIIAHNVEEALEFAKEVGYPVIVRPAYTLGGTGGGIAYNEEELKYIASKGL 196

Query: 159 SWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
             +   Q+LIEQ V G  E+   VM D+  +   I V   +     +   + +S  V P+
Sbjct: 197 KLSLIHQVLIEQSVLGWKEIEYEVMRDSQDN--CITVCNMENID-PVGIHTGDSIVVAPS 253

Query: 218 K-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +    Y+ ++  A    +++   G     F  +P S +   +E+N 
Sbjct: 254 QTLSDKEYQMLRSAAINIIRSLKIEGGCNVQFALNPNSMEYVVIEVNP 301


>gi|330507164|ref|YP_004383592.1| carbamoyl-phosphate synthase, large subunit [Methanosaeta concilii
           GP-6]
 gi|328927972|gb|AEB67774.1| carbamoyl-phosphate synthase, large subunit [Methanosaeta concilii
           GP-6]
          Length = 1080

 Score = 75.5 bits (185), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 51/277 (18%), Positives = 95/277 (34%), Gaps = 36/277 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH--------- 59
           SG     +L + G +V  +         D D +  + +  L+PD+   ++          
Sbjct: 29  SGSQACKSLREEGIEVVLVNSNPATIMTDPDTADKVYIEPLEPDIVAKIIEKERPDGIIA 88

Query: 60  GNFGEDG-------LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
           G  G+ G           ILE   +    + + +   + D+   KQ +   G PV  S  
Sbjct: 89  GIGGQTGLNITSELAEMGILEKYNVEVLGTSVKSIQEAEDRDLFKQAMQKVGEPVPESRA 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           VN     ++    +  P V++P       G  + K  + +          +   Q+L+E+
Sbjct: 149 VNTLDEALEVMEELGLPLVVRPAYTLGGSGGGIAKTREELLQICDLGLKRSRISQVLLEE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIA-VPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            V G  EL   VM D++     I  +   D            S  V P + +     + +
Sbjct: 209 SVGGWTELEYEVMRDSNDTCITICNMENMDPMGIHT----GESIVVTPIQTLTDHEIQML 264

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +  A    +A+   G     F       +   +E+N 
Sbjct: 265 RSAAINIIRALKIEGGCNIQFAV--KDGEYRVIEVNP 299



 Score = 54.7 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 42/283 (14%), Positives = 95/283 (33%), Gaps = 41/283 (14%)

Query: 18  SGKACASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVL-----HG--- 60
           +  A   AL + G +   I         D D S  L    +  +   N++     HG   
Sbjct: 579 TVHAVM-ALREQGIEAHIINNNPETVSTDYDTSDKLFFEPVTLEDVMNIIEKEEPHGLMV 637

Query: 61  NFGEDGLVQAILEL--------LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            FG    +   L L        L+     +   +  L+ D+ R   +++   +P   +  
Sbjct: 638 QFGGQTAINLALPLEKEIARLGLKTKILGTSPDSIDLAEDRERFNALMTRLNIPQPNAGI 697

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                   +    I  P +++P        + ++  ++ + + + ++   +    +LI+ 
Sbjct: 698 AFSPAEAREVAAKIGYPVLVRPSYVLGGRAMEIVYDEKGLDVYMQEAVRVSREHPVLIDD 757

Query: 171 YV-DGIELTC-GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           ++ D +E+    V     + +  I     +   +    S  ++  + P  +P  + + V+
Sbjct: 758 FLQDAVEIDVDAVCDGKDVLIGAIMEHIEEAGIH----SGDSACMIPPQTLPGVVLEVVR 813

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN-----VQP 266
                   A+G   I   +         V+ LE N       P
Sbjct: 814 DYVRKI--ALGLGVIGIVNLQMAYKDGTVYVLEANPRSSRTIP 854


>gi|312864214|ref|ZP_07724448.1| carbamoyl-phosphate synthase, large subunit [Streptococcus
           vestibularis F0396]
 gi|322517235|ref|ZP_08070114.1| carbamoyl-phosphate synthase, large subunit [Streptococcus
           vestibularis ATCC 49124]
 gi|311100215|gb|EFQ58424.1| carbamoyl-phosphate synthase, large subunit [Streptococcus
           vestibularis F0396]
 gi|322124141|gb|EFX95675.1| carbamoyl-phosphate synthase, large subunit [Streptococcus
           vestibularis ATCC 49124]
          Length = 1059

 Score = 75.5 bits (185), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 27/217 (12%), Positives = 73/217 (33%), Gaps = 20/217 (9%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYV 129
           L    +    + +     + D+   +Q +    +P  P           ++   I  P +
Sbjct: 646 LSKAGVKILGTQVADLDRAEDRDLFEQALKDLDIPQPPGQTATNEEEAVEAARKIGFPVL 705

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS--- 186
           ++P        + +++ +  +   +  +   +    +L++ Y+ G E     + D     
Sbjct: 706 VRPSYVLGGRAMEIVENEDDLRSYMRTAVKASPDHPVLVDSYIIGRECEVDAISDGKDVL 765

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISR 245
           +      + ++  +S        +S  V P + +   I + +          + C G+  
Sbjct: 766 IPGIMEHIERAGVHS-------GDSMAVYPPQTLSKKIQETIADYTKRLAIGLNCIGMMN 818

Query: 246 SDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277
             F+       V+ +E+N       P ++ V+  P  
Sbjct: 819 IQFVI--KDETVYVIEVNPRASRTVPFLSKVTDIPMA 853



 Score = 73.6 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 51/296 (17%), Positives = 107/296 (36%), Gaps = 34/296 (11%)

Query: 25  ALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNVLHGNFG 63
           AL++ G+ V  ++        D+ +                +L   +PD     L G  G
Sbjct: 36  ALKEEGYSVVLVNSNPATIMTDKEIADKVYIEPITLEFVTRILRKERPDALLPTLGGQTG 95

Query: 64  EDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFT 117
            +  ++     ILE L +    + + A   + D+   KQ++     P+  S +VN     
Sbjct: 96  LNMAMELSKAGILEELGVELLGTKLSAIDQAEDRDLFKQLMEDLKQPIPESEIVNTVEEA 155

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IE 176
           +     I  P +++P       G  +   ++ +          +   Q LIE+ + G  E
Sbjct: 156 VAFATEIGYPVIVRPAFTLGGTGGGMCANEEELREIAENGLKLSPVTQCLIERSIAGFKE 215

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +   VM DA+ +   + V   + +     ++  +        +     + ++  +    +
Sbjct: 216 IEYEVMRDAADNA--LVVCNMENFDPVGIHTGDSIVFAPTQTLSDIENQMLRDASLKIIR 273

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           A+   G        DP S K + +E+N  P ++  S     +   GY   +L   +
Sbjct: 274 ALKIEGGCNVQLALDPNSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAKI 325


>gi|284990911|ref|YP_003409465.1| carbamoyl-phosphate synthase L chain ATP- binding protein
           [Geodermatophilus obscurus DSM 43160]
 gi|284064156|gb|ADB75094.1| Carbamoyl-phosphate synthase L chain ATP- binding protein
           [Geodermatophilus obscurus DSM 43160]
          Length = 1843

 Score = 75.5 bits (185), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 44/214 (20%), Positives = 77/214 (35%), Gaps = 13/214 (6%)

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G   ED     +   L + +      A  L   K+ +K +    GVPV P       ++D
Sbjct: 89  GFVAEDPAFAELCADLGVTFVGPPPEAMRLLGAKIEAKVLAEKVGVPVAPWSHGPVESLD 148

Query: 120 S----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGDQLLIEQY 171
                  +I  P ++K   GG   GI V++    +   L     ++        + +E+ 
Sbjct: 149 DGRRHADVIGYPLIVKARSGGGGRGIRVVRSPDELEEALTRTRSEAEKSFGDPIVFMERL 208

Query: 172 VD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
           V+ G  +   V+ D    V    V          K    +S    PA +  +    ++  
Sbjct: 209 VEGGRHVEVQVIADQHGTVWAPGVRDCSVQRRNQKVIEESS---SPA-LTGEQDAALRES 264

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           A    +A G  G    +FL+ P  +   +LE+N 
Sbjct: 265 AVALVRAAGYVGAGTVEFLYQPEEQLTTFLEVNT 298


>gi|169794666|ref|YP_001712459.1| putative Acetyl-/propionyl-coenzyme A carboxylase alpha chain
           [Includes: biotin carboxylase; biotin carboxyl carrier
           protein (BCCP)] [Acinetobacter baumannii AYE]
 gi|213157962|ref|YP_002320760.1| acetyl-/propionyl-coenzyme A carboxylase alpha chain [Acinetobacter
           baumannii AB0057]
 gi|215482256|ref|YP_002324438.1| acetyl-CoA carboxylase biotin carboxylase subunit [Acinetobacter
           baumannii AB307-0294]
 gi|301345857|ref|ZP_07226598.1| 3-methylcrotonyl-CoA carboxylase alpha subunit [Acinetobacter
           baumannii AB056]
 gi|301511360|ref|ZP_07236597.1| 3-methylcrotonyl-CoA carboxylase alpha subunit [Acinetobacter
           baumannii AB058]
 gi|301596588|ref|ZP_07241596.1| 3-methylcrotonyl-CoA carboxylase alpha subunit [Acinetobacter
           baumannii AB059]
 gi|332851549|ref|ZP_08433526.1| putative acetyl-CoA carboxylase, biotin carboxylase subunit
           [Acinetobacter baumannii 6013150]
 gi|332867748|ref|ZP_08437820.1| putative acetyl-CoA carboxylase, biotin carboxylase subunit
           [Acinetobacter baumannii 6013113]
 gi|169147593|emb|CAM85454.1| putative Acetyl-/propionyl-coenzyme A carboxylase alpha chain
           [Includes: Biotin carboxylase ; Biotin carboxyl carrier
           protein (BCCP)] [Acinetobacter baumannii AYE]
 gi|213057122|gb|ACJ42024.1| acetyl-/propionyl-coenzyme A carboxylase alpha chain [Acinetobacter
           baumannii AB0057]
 gi|213987001|gb|ACJ57300.1| acetyl-CoA carboxylase biotin carboxylase subunit [Acinetobacter
           baumannii AB307-0294]
 gi|332729894|gb|EGJ61226.1| putative acetyl-CoA carboxylase, biotin carboxylase subunit
           [Acinetobacter baumannii 6013150]
 gi|332733754|gb|EGJ64906.1| putative acetyl-CoA carboxylase, biotin carboxylase subunit
           [Acinetobacter baumannii 6013113]
          Length = 646

 Score = 75.5 bits (185), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 33/198 (16%), Positives = 68/198 (34%), Gaps = 14/198 (7%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD----SQHLISPPYVIK 131
           +I +      A  L   K  SK  +   GVP  P    +R  ++        I  P ++K
Sbjct: 100 QITFIGPTASAIELMGSKRLSKIAMIEAGVPCVPGYEGDRQDLEYLATQAEQIGFPIMVK 159

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSS-----SWNHGDQLLIEQYVDGIELTCGVMGDAS 186
              GG   G+ ++++   +   L  +      ++  G+ +L +  +    +   V GD  
Sbjct: 160 ASAGGGGRGMRLVQQASELFEALQTARSEAENAFGSGELILEKAVIAPRHVEIQVFGDTH 219

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRS 246
            +   +            K             +  ++ +++   A  A +     G    
Sbjct: 220 GNYVYLFERDCSIQRRHQK----VVEEAPCPVMTPELRQKMGEAAVAAAKTCAYVGAGTV 275

Query: 247 DFLFDPLSRKVFWLEINV 264
           +FL D      ++LE+N 
Sbjct: 276 EFLLDAS-GAFYFLEMNT 292


>gi|28492987|ref|NP_787148.1| biotin carboxylase [Tropheryma whipplei str. Twist]
 gi|28572195|ref|NP_788975.1| acyl-CoA carboxylase complex A subunit [Tropheryma whipplei
           TW08/27]
 gi|28410326|emb|CAD66712.1| putative acyl-CoA carboxylase complex A subunit [Tropheryma
           whipplei TW08/27]
 gi|28476027|gb|AAO44117.1| biotin carboxylase [Tropheryma whipplei str. Twist]
          Length = 591

 Score = 75.5 bits (185), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 70/198 (35%), Gaps = 14/198 (7%)

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVI 130
             I +        AL  DK+ ++++    GVPV P     +       +       P  I
Sbjct: 100 AGITWVGPRAGVIALLADKLSARKIAEQVGVPVPPGGEHVVSCASEVHNFADKYGLPIAI 159

Query: 131 KPLKGGSSLGIIVIKK----DQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDA 185
           K   GG  LG+ V+K+    D+       ++ +     +  IE+Y+D    +    + D 
Sbjct: 160 KAAYGGGGLGMKVVKQKKNIDELFASAQREAQAAFGNKECFIEKYIDRPRHVETQCLADL 219

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
             +V  ++           K       +     +     + +   +    +A    G   
Sbjct: 220 FGNVQVVSTRDCSVQRRHQKLIEEAPAYT----LTDKQEETLITASKAVMKAAEYSGAGT 275

Query: 246 SDFLFDPLSRKVFWLEIN 263
            +FL D    K+F+LE+N
Sbjct: 276 CEFLID-QDGKIFFLEVN 292


>gi|312277931|gb|ADQ62588.1| Carbamoyl-phosphate synthase large chain [Streptococcus
           thermophilus ND03]
          Length = 1059

 Score = 75.5 bits (185), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 27/217 (12%), Positives = 73/217 (33%), Gaps = 20/217 (9%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYV 129
           L    +    + +     + D+   +Q +    +P  P           ++   I  P +
Sbjct: 646 LSKAGVKILGTQVADLDRAEDRDLFEQALKDLDIPQPPGQTATNEEEAVEAARKIGFPVL 705

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS--- 186
           ++P        + +++ +  +   +  +   +    +L++ Y+ G E     + D     
Sbjct: 706 VRPSYVLGGRAMEIVENEDDLRSYMRTAVKASPDHPVLVDSYIIGRECEVDAISDGKDVL 765

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISR 245
           +      + ++  +S        +S  V P + +   I + +          + C G+  
Sbjct: 766 IPGIMEHIERAGVHS-------GDSMAVYPPQTLSKKIQETIADYTKRLAIGLNCIGMMN 818

Query: 246 SDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277
             F+       V+ +E+N       P ++ V+  P  
Sbjct: 819 IQFVI--KDETVYVIEVNPRASRTVPFLSKVTDIPMA 853



 Score = 71.3 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 50/296 (16%), Positives = 106/296 (35%), Gaps = 34/296 (11%)

Query: 25  ALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNVLHGNFG 63
           AL++ G+ V  ++        D+ +                +L   +PD     L G  G
Sbjct: 36  ALKEEGYSVVLVNSNPATIMTDKEIADKVYIEPITLEFVTRILRKERPDALLPTLGGQTG 95

Query: 64  EDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFT 117
            +  ++     IL+ L +    + + A   + D+   KQ++     P+  S +VN     
Sbjct: 96  LNMAMELSKAGILDELGVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIVNTVEEA 155

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IE 176
           +     I  P +++P       G  +   ++ +          +   Q LIE+ + G  E
Sbjct: 156 VAFATEIGYPVIVRPAFTLGGTGGGMCANEEELREIAENGLKLSPVTQCLIERSIAGFKE 215

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +   VM DA  +   + V   + +     ++  +        +     + ++  +    +
Sbjct: 216 IEYEVMRDAEDNA--LVVCNMENFDPVGIHTGDSIVFAPTQTLSDIENQMLRDASLKIIR 273

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           A+   G        DP S K + +E+N  P ++  S     +   GY   +L   +
Sbjct: 274 ALKIEGGCNVQLALDPHSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAKI 325


>gi|300690400|ref|YP_003751395.1| Biotin carboxylase (acetyl-CoA carboxylase subunit A) [Ralstonia
           solanacearum PSI07]
 gi|299077460|emb|CBJ50085.1| Biotin carboxylase (Acetyl-CoA carboxylase subunit A) [Ralstonia
           solanacearum PSI07]
          Length = 455

 Score = 75.5 bits (185), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 81/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H  +G   E+      +E     +         L  DK+ +KQ +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAERVEQSGFTFIGPTPECIRLMGDKVSAKQAMIKSGVPCVPGSEG 136

Query: 113 ----VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
                 +  + +   +  P +IK   GG   G+ V+  + ++   +     ++       
Sbjct: 137 ALPDDPKEILATARKVGYPVIIKAAGGGGGRGMRVVHTEAALLNAVNMTREEAGRAFGNP 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
           ++ +E++++    +   V+ D   +   +            K          PA  IP  
Sbjct: 197 EVYMEKFLEHPRHVEIQVLADQHRNAVWLGERDCSMQRRHQK-----VIEEAPAPHIPRR 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + + +      A + IG RG    +FL+   + + +++E+N 
Sbjct: 252 LIERIGDRCADACKKIGYRGAGTFEFLY--ENGEFYFIEMNT 291


>gi|183979202|emb|CAQ42993.1| carbamoyl phosphate synthetase [Streptococcus thermophilus]
          Length = 1059

 Score = 75.5 bits (185), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 27/217 (12%), Positives = 73/217 (33%), Gaps = 20/217 (9%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYV 129
           L    +    + +     + D+   +Q +    +P  P           ++   I  P +
Sbjct: 646 LSKAGVKILGTQVADLDRAEDRDLFEQALKDLDIPQPPGQTATNEEEAVEAARKIGFPVL 705

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS--- 186
           ++P        + +++ +  +   +  +   +    +L++ Y+ G E     + D     
Sbjct: 706 VRPSYVLGGRAMEIVENEDDLRSYMRTAVKASPDHPVLVDSYIIGRECEVDAISDGKDVL 765

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISR 245
           +      + ++  +S        +S  V P + +   I + +          + C G+  
Sbjct: 766 IPGIMEHIERAGVHS-------GDSMAVYPPQTLSKKIQETIADYTKRLAIGLNCIGMMN 818

Query: 246 SDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277
             F+       V+ +E+N       P ++ V+  P  
Sbjct: 819 IQFVI--KDETVYVIEVNPRASRTVPFLSKVTDIPMA 853



 Score = 71.3 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 50/296 (16%), Positives = 106/296 (35%), Gaps = 34/296 (11%)

Query: 25  ALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNVLHGNFG 63
           AL++ G+ V  ++        D+ +                +L   +PD     L G  G
Sbjct: 36  ALKEEGYSVVLVNSNPATIMTDKEIADKVYIEPITLEFVTRILRKERPDALLPTLGGQTG 95

Query: 64  EDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFT 117
            +  ++     IL+ L +    + + A   + D+   KQ++     P+  S +VN     
Sbjct: 96  LNMAMELSKAGILDELGVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIVNTVEEA 155

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IE 176
           +     I  P +++P       G  +   ++ +          +   Q LIE+ + G  E
Sbjct: 156 VAFATEIGYPVIVRPAFTLGGTGGGMCANEEELREIAENGLKLSPVTQCLIERSIAGFKE 215

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +   VM DA  +   + V   + +     ++  +        +     + ++  +    +
Sbjct: 216 IEYEVMRDAEDNA--LVVCNMENFDPVGIHTGDSIVFAPTQTLSDIENQMLRDASLKIIR 273

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           A+   G        DP S K + +E+N  P ++  S     +   GY   +L   +
Sbjct: 274 ALKIEGGCNVQLALDPHSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAKI 325


>gi|289664951|ref|ZP_06486532.1| biotin carboxylase [Xanthomonas campestris pv. vasculorum NCPPB702]
          Length = 675

 Score = 75.5 bits (185), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 75/221 (33%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H  +G   E+           I +      A     DK  +K ++   GVP+ P    
Sbjct: 90  AIHPGYGFLSENAAFAEACAHAGIVFIGPPAAAIRAMGDKSAAKALMQRAGVPLTPGYHG 149

Query: 113 ---VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
                 F       I  P +IK   GG   G+  +    +    L     ++ S      
Sbjct: 150 DEQAPAFLRAQADAIGYPVLIKASAGGGGKGMRRVDASAAFEEALASCQREAQSAFGNAH 209

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           +L+E+YV+    +   V GD   +V  +           ++          PA  +    
Sbjct: 210 VLVEKYVERPRHIEIQVFGDTHGEVVYL-----FERDCSVQRRHQKVLEEAPAPGMNEAR 264

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              + + A  A QA+G  G    +F+  P     +++E+N 
Sbjct: 265 RAAMGKAAVDAAQAVGYVGAGTVEFIAGP-DGDFYFMEMNT 304


>gi|289620596|emb|CBI52957.1| unnamed protein product [Sordaria macrospora]
          Length = 1147

 Score = 75.5 bits (185), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 56/289 (19%), Positives = 107/289 (37%), Gaps = 37/289 (12%)

Query: 4   LMGGISSEREVSLSSGKACASALEDAGF--------------------KVSQIDVDRS-V 42
           L  G + E + S   G     AL++AG                     +V  + V    V
Sbjct: 81  LAIGQAGEFDYS---GSQALKALKEAGVASVLINPNIATIQTNHSLADEVYYLPVTPEYV 137

Query: 43  GLVLAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQ 98
             V+   KPD  F    G    +  VQ     + E   +    + +    LS D+    +
Sbjct: 138 EYVIQREKPDGIFLSFGGQTALNLGVQMQKLGLFEKYGVKVLGTSVRTLELSEDRDLFAK 197

Query: 99  VVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
            +    +P+  SI VN     +D+ + I  P +++       LG      ++ +    + 
Sbjct: 198 ALEEINIPIAKSIAVNTVDEALDAANKIGYPIIVRAAYALGGLGSGFANNEEELR--NMA 255

Query: 157 SSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215
           + S     Q+L+E+ + G  E+   V+ DA+ +   I V   + +   L   + +S  V 
Sbjct: 256 ARSLTLSPQILVEKSLKGWKEVEYEVVRDANNN--CITVCNMENFD-PLGIHTGDSIVVA 312

Query: 216 PAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
           P++ +  + Y  ++  A    + +G  G     +   P       +E+N
Sbjct: 313 PSQTLSDEEYHMLRSAAIKIVRHLGVVGECNVQYALQPDGLDYRVIEVN 361



 Score = 52.4 bits (125), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 21/163 (12%), Positives = 59/163 (36%), Gaps = 12/163 (7%)

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSS 138
            +       + D+ +  +++ S GV       +            +  P +++P    S 
Sbjct: 717 GTDPRDIDRAEDRQKFSEILDSIGVDQPAWKELTSVEAAEKFAEEVGYPVLVRPSYVLSG 776

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL----TCGVMGDASLDVTEIAV 194
             + VI+  + +   L  +++ +    ++I ++++G +          G+  L      V
Sbjct: 777 AAMTVIRSKEDLKDKLEAAANVSPEHPVVITKFIEGAQEIDVDGVASEGNLILHAVSEHV 836

Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
            ++  +S +       +  + PA +       V+ +A    +A
Sbjct: 837 EQAGVHSGDA------TLVLPPASLDQTTMDRVKEIAQKVAKA 873


>gi|225387389|ref|ZP_03757153.1| hypothetical protein CLOSTASPAR_01142 [Clostridium asparagiforme
           DSM 15981]
 gi|225046521|gb|EEG56767.1| hypothetical protein CLOSTASPAR_01142 [Clostridium asparagiforme
           DSM 15981]
          Length = 450

 Score = 75.5 bits (185), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 80/221 (36%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  FG   E+     +     I +            +K  +++ +   GVPV P    
Sbjct: 77  AIHPGFGFLSENAKFAKLCAECNIAFIGPSAEIINRMGNKSEARRTMMDAGVPVVPGSKE 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD----QSIPLDLLQSSSWNHGDQ 165
            +      ++    I  P +IK   GG   G+ + + +    ++     ++S      D 
Sbjct: 137 PVHQAAEALEMAKSIGFPVMIKASSGGGGKGMRISRGEADFTENFNAAQMESVKGFSDDT 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           + IE+Y++    +   +M D   +V  +            K          P   I  D+
Sbjct: 197 MYIEKYIEKPRHIEFQIMADKHGNVVHLGERDCSIQRRHQK-----VLEEAPCDVITQDL 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +   A  A +A+G       +FL D  ++  +++E+N 
Sbjct: 252 RERMGDTAVRAAKAVGYENAGTIEFLLDK-NKDFYFMEMNT 291


>gi|71897682|ref|ZP_00679927.1| Carbamoyl-phosphate synthase, large subunit, glutamine-dependent
           [Xylella fastidiosa Ann-1]
 gi|71732585|gb|EAO34638.1| Carbamoyl-phosphate synthase, large subunit, glutamine-dependent
           [Xylella fastidiosa Ann-1]
          Length = 1080

 Score = 75.5 bits (185), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 51/278 (18%), Positives = 100/278 (35%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL   GF+V  +         D D            R+V  ++   KPD    
Sbjct: 29  SGAQACKALRAEGFRVVLVNSNPATIMTDPDMADAVYIEPIHWRTVEKIITKEKPDALLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      +LE   +    +   A  ++ D+   +  +   G+    + +
Sbjct: 89  TMGGQTALNCALDLADHGVLEKYGVELIGAKREAIRMAEDRELFRVAMQEIGLECPKAEV 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  ++ Q  +  P +I+P       G  +    Q     + +    +   ++L+E+
Sbjct: 149 AKSLERALEIQAKVGFPTIIRPSFTLGGTGGGIAYNRQEFEEIIKRGLELSPVHEVLVEE 208

Query: 171 YVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            V G  E    V+ DAS + +   ++   D           +S  V PA+ +    Y+ +
Sbjct: 209 SVLGWKEFEMEVVRDASDNCIIVCSIENLDPMGVHT----GDSITVAPAQTLSDKEYQRL 264

Query: 228 QRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  DP + +V  +E+N 
Sbjct: 265 RDASIAVLRKIGVDTGGSNVQFGIDPQTGRVVVIEMNP 302



 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 33/199 (16%), Positives = 78/199 (39%), Gaps = 8/199 (4%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYV 129
           LE   +P   +   +  L+ D+ R +++V   G+   P+               I  P V
Sbjct: 654 LEANGVPVIGTSPESIDLAEDRERFQRLVQQLGLRQPPNCTARTADEALVLAREIGYPLV 713

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLD 188
           ++P        + ++  +  +   +  +   ++   +L+++++D  +E+   ++ D    
Sbjct: 714 VRPSYVLGGRAMEIVYSEADLARYVRDAVKVSNDSPVLLDRFLDNAVEVDVDIIADPEGQ 773

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           V    V   +       +S  +S  + P  + +    +++R      QA+   G+  + F
Sbjct: 774 VLIGGV--MEHIEEAGVHSGDSSCSLPPYSLSVATQDDLRRQVIRLAQALNVIGLMNTQF 831

Query: 249 LF---DPLSRKVFWLEINV 264
                D  S  V+ LE+N 
Sbjct: 832 AIQSNDDGSDIVYLLEVNP 850


>gi|28198316|ref|NP_778630.1| carbamoyl phosphate synthase large subunit [Xylella fastidiosa
           Temecula1]
 gi|71276056|ref|ZP_00652337.1| Carbamoyl-phosphate synthase, large subunit, glutamine-dependent
           [Xylella fastidiosa Dixon]
 gi|71899478|ref|ZP_00681636.1| Carbamoyl-phosphate synthase, large subunit, glutamine-dependent
           [Xylella fastidiosa Ann-1]
 gi|170729660|ref|YP_001775093.1| carbamoyl phosphate synthase large subunit [Xylella fastidiosa M12]
 gi|182680955|ref|YP_001829115.1| carbamoyl phosphate synthase large subunit [Xylella fastidiosa M23]
 gi|32129438|sp|Q87EB8|CARB_XYLFT RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|28056386|gb|AAO28279.1| carbamoyl-phosphate synthase large chain [Xylella fastidiosa
           Temecula1]
 gi|71163139|gb|EAO12860.1| Carbamoyl-phosphate synthase, large subunit, glutamine-dependent
           [Xylella fastidiosa Dixon]
 gi|71730791|gb|EAO32864.1| Carbamoyl-phosphate synthase, large subunit, glutamine-dependent
           [Xylella fastidiosa Ann-1]
 gi|167964453|gb|ACA11463.1| carbamoyl-phosphate synthase large chain [Xylella fastidiosa M12]
 gi|182631065|gb|ACB91841.1| carbamoyl-phosphate synthase, large subunit [Xylella fastidiosa
           M23]
 gi|307579423|gb|ADN63392.1| carbamoyl phosphate synthase large subunit [Xylella fastidiosa
           subsp. fastidiosa GB514]
          Length = 1080

 Score = 75.5 bits (185), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 51/278 (18%), Positives = 100/278 (35%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL   GF+V  +         D D            R+V  ++   KPD    
Sbjct: 29  SGAQACKALRAEGFRVVLVNSNPATIMTDPDMADAVYIEPIHWRTVEKIITKEKPDALLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      +LE   +    +   A  ++ D+   +  +   G+    + +
Sbjct: 89  TMGGQTALNCALDLADHGVLEKYGVELIGAKREAIRMAEDRELFRVAMQEIGLECPKAEV 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  ++ Q  +  P +I+P       G  +    Q     + +    +   ++L+E+
Sbjct: 149 AKSLERALEIQAKVGFPTIIRPSFTLGGTGGGIAYNRQEFEEIIKRGLELSPVHEVLVEE 208

Query: 171 YVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            V G  E    V+ DAS + +   ++   D           +S  V PA+ +    Y+ +
Sbjct: 209 SVLGWKEFEMEVVRDASDNCIIVCSIENLDPMGVHT----GDSITVAPAQTLSDKEYQRL 264

Query: 228 QRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  DP + +V  +E+N 
Sbjct: 265 RDASIAVLRKIGVDTGGSNVQFGIDPQTGRVVVIEMNP 302



 Score = 67.5 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 33/199 (16%), Positives = 77/199 (38%), Gaps = 8/199 (4%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYV 129
           LE   +P   +   +  L+ D+ R +++V   G+   P+               I  P V
Sbjct: 654 LEANGVPVIGTSPESIDLAEDRERFQRLVQQLGLRQPPNCTARTADEALVLAREIGYPLV 713

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLD 188
           ++P        + ++  +  +   +  +   ++   +L+++++D  +E+   ++ D    
Sbjct: 714 VRPSYVLGGRAMEIVYSEADLARYVRDAVKVSNDSPVLLDRFLDNAVEVDVDIIADPEGQ 773

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           V    V   +       +S  +S  + P  +      +++R      QA+   G+  + F
Sbjct: 774 VLIGGV--MEHIEEAGVHSGDSSCSLPPYSLSAATQDDLRRQVIRLAQALNVIGLMNTQF 831

Query: 249 LF---DPLSRKVFWLEINV 264
                D  S  V+ LE+N 
Sbjct: 832 AIQSNDDGSDIVYLLEVNP 850


>gi|71906578|ref|YP_284165.1| carbamoyl phosphate synthase large subunit [Dechloromonas aromatica
           RCB]
 gi|71846199|gb|AAZ45695.1| carbamoyl-phosphate synthase large subunit [Dechloromonas aromatica
           RCB]
          Length = 1068

 Score = 75.5 bits (185), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 27/196 (13%), Positives = 77/196 (39%), Gaps = 8/196 (4%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           LE   +P   +   +  ++ D+ R ++++   G+   P+         +     I  P V
Sbjct: 648 LEANGVPIIGTTPESIDIAEDRERFQKLLHDLGLKQPPNRTARTEEDALRLAQEIGYPLV 707

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++ + + +   + ++   ++   +L+++++ D +E     + D    
Sbjct: 708 VRPSYVLGGRAMEIVHEQKDLERYMREAVKVSNDSPVLLDRFLNDAVECDVDALSDGEEV 767

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           +    +   +       +S  ++  + P  +   +  E++R   L  +A+   G+    F
Sbjct: 768 IIGGVMEHIEQAGV---HSGDSACSLPPYSLSAAVQDELRRQTKLMAKALNVCGLMNVQF 824

Query: 249 LFDPLSRKVFWLEINV 264
                   V+ LE+N 
Sbjct: 825 AI--KDNDVYVLEVNP 838



 Score = 61.3 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 48/278 (17%), Positives = 99/278 (35%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +              DV        + V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYKVILVNSNPATIMTDPEMADVTYIEPITWQVVAKIIEKERPDALLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +    + +L    +    +   A   + D+ + K  ++  G+    S  
Sbjct: 89  TMGGQTALNCALDLDREGVLAKFNVELIGASKEAIDKAEDRQKFKDAMTKIGLGSAKSAT 148

Query: 113 VNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +        Q +I  P +I+P       G  +    +   +   +    +  ++LLIE+
Sbjct: 149 AHSMEEAYQVQAVIGFPTIIRPSFTLGGTGGGIAYNMEEFEIICKRGLEASPTNELLIEE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + +   I   ++ D           +S  V PA+ +    Y+ +
Sbjct: 209 SLLGWKEYEMEVVRDKADNCIIICSIENLDPMGVHT----GDSITVAPAQTLTDKEYQIL 264

Query: 228 QRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P   ++  +E+N 
Sbjct: 265 RNASIAVLREIGVDTGGSNVQFSINPKDGRMIVIEMNP 302


>gi|15615099|ref|NP_243402.1| carbamoyl phosphate synthase large subunit [Bacillus halodurans
           C-125]
 gi|22095534|sp|Q9K9V9|CARB_BACHD RecName: Full=Carbamoyl-phosphate synthase pyrimidine-specific
           large chain; AltName: Full=Carbamoyl-phosphate
           synthetase ammonia chain
 gi|10175156|dbj|BAB06255.1| carbamoyl-phosphate synthetase (catalytic subunit) [Bacillus
           halodurans C-125]
          Length = 1062

 Score = 75.5 bits (185), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 44/286 (15%), Positives = 102/286 (35%), Gaps = 33/286 (11%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI---------DVD------------RSVGLV 45
           G ++E + +   G     AL++ G++V  +         D                V  +
Sbjct: 21  GQAAEFDYA---GTQACQALKEEGYEVILVNSNPATIMTDTTMADRVYIEPLTLEFVSRI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   +PD     L G  G +  V+     IL+   +    + + +   + D+   + ++ 
Sbjct: 78  IRMERPDGILPTLGGQTGLNMAVELDQAGILKEYNVELLGTKLDSIQQAEDRDLFRALMK 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
               PV  S +++           +  P +++P       G  ++  ++ +   +     
Sbjct: 138 ELNEPVPDSEIIHTLEEAYTFVERVGYPIIVRPAYTLGGTGGGLVYNEEDLVEIVTSGLK 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
           ++   Q L+E+ + G  E+   VM D       I V   +       ++  +        
Sbjct: 198 YSPVTQCLVEKSIAGFKEIEYEVMRDGKDHA--IVVCNMENIDPVGVHTGDSIVVAPSQT 255

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +    Y+ ++  +    +A+G  G     F  DP S + + +E+N 
Sbjct: 256 LSDREYQMLRNSSLKIIRALGIEGGCNVQFALDPDSFQYYIIEVNP 301



 Score = 61.7 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 41/283 (14%), Positives = 101/283 (35%), Gaps = 39/283 (13%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ------ 69
           A+++AG++   +         D   S  L    L  +   ++++    E  +VQ      
Sbjct: 580 AIKEAGYEAIIVNNNPETVSTDFSTSDKLYFEPLTVEDVMHIVNLEQPEGVIVQFGGQTA 639

Query: 70  ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ--HL 123
               + L    +    + +     + D+ + +Q +    +P              Q    
Sbjct: 640 INLASELAARGVKIIGTALEDMDRAEDRDKFEQTLVELNIPQPLGDTATSIEEARQIAER 699

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + ++ K++ +   +  +   N    +LI++Y+ G EL    + 
Sbjct: 700 IGYPVLVRPSYVLGGRAMEIVYKEEELLNYMAHAVKVNPKHPVLIDRYLTGKELEVDAIS 759

Query: 184 DAS---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIG 239
           D     +      + ++  +S        +S  V P + +P  + +++        + + 
Sbjct: 760 DGENVYIPGIMEHIERAGVHS-------GDSIAVYPPQTVPESLKQKLIERTIELARGLR 812

Query: 240 CRGISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277
             G+    F++      V+ LE+N       P ++ V+  P  
Sbjct: 813 IVGLLNIQFVWHKDD--VYVLEVNPRSSRTVPFLSKVTGVPMA 853


>gi|307824611|ref|ZP_07654835.1| carbamoyl-phosphate synthase, large subunit [Methylobacter
           tundripaludum SV96]
 gi|307734265|gb|EFO05118.1| carbamoyl-phosphate synthase, large subunit [Methylobacter
           tundripaludum SV96]
          Length = 1072

 Score = 75.5 bits (185), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 36/262 (13%), Positives = 102/262 (38%), Gaps = 27/262 (10%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ------ 69
           AL + G++   I         D D S  L    L  +    ++H    +  +VQ      
Sbjct: 587 ALREDGYETIMINCNPETVSTDFDTSDRLYFESLTLEDVLEIVHIEQPKGVIVQYGGQTP 646

Query: 70  ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHL 123
                 LE   +P   +   +  L+ D+ R ++++    +   P+         +++   
Sbjct: 647 LKLARALEAAGVPIIGTSPDSIDLAEDRERFQKLLERLNLKQPPNATARSVEQAINAAKE 706

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVM 182
           +  P V++P        + ++  ++ +   + ++ S ++   +L+++++ D +E+    +
Sbjct: 707 LGYPLVVRPSYVLGGRAMEIVFNEEGLQRYMKEAVSVSNDSPVLLDRFLDDAVEMDVDAI 766

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  ++  + P ++  ++  +++       +A+G  G
Sbjct: 767 YDGEQVLIGGLMEHIEQAGV---HSGDSACSLPPYELAPELQDKLREQVTKMAEALGVVG 823

Query: 243 ISRSDFLFDPLSRKVFWLEINV 264
           +  + F        ++ LE+N 
Sbjct: 824 LMNTQFAI--QGEDIYVLEVNP 843



 Score = 63.2 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 49/278 (17%), Positives = 97/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D D            ++V  ++A  +PD    
Sbjct: 29  SGTQACKALREEGYRVILVNSNPATIMTDPDMADATYIEPIDWQTVEKIIAKERPDAILP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      +LE   +    +   A   + D+    Q +   G  V  S  
Sbjct: 89  TMGGQTALNCALDLDANGVLEKYGVEMIGATKEAINKAEDRELFNQAMRKIGYEVAKSKT 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     + +Q  +  P VI+P       G  +    +       +    +  ++LLIE+
Sbjct: 149 AHSMEEALAAQQEVGYPTVIRPSFTMGGSGGGIAYNKEEFVEICERGLYLSPTNELLIEE 208

Query: 171 YVDG-IELTCGVMGD-ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            V G  E    V+ D     +   ++   D           +S  V PA+ +    Y+ +
Sbjct: 209 SVLGWKEYEMEVVRDSKDNCIIVCSIENFDPMGVHT----GDSITVAPAQTLTDKEYQIL 264

Query: 228 QRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
           + ++    + IG   G S      +P   ++  +E+N 
Sbjct: 265 RNVSLAVLREIGVDTGGSNVQVAINPKDGRMIVIEMNP 302


>gi|302385686|ref|YP_003821508.1| carbamoyl-phosphate synthase, large subunit [Clostridium
           saccharolyticum WM1]
 gi|302196314|gb|ADL03885.1| carbamoyl-phosphate synthase, large subunit [Clostridium
           saccharolyticum WM1]
          Length = 1066

 Score = 75.5 bits (185), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 29/199 (14%), Positives = 75/199 (37%), Gaps = 10/199 (5%)

Query: 69  QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTMDSQHLISP 126
           QA++++  IP   +       + D+    +++  C +P      V        +   +  
Sbjct: 645 QALMKM-GIPILGTAAEDVDAAEDRELFDKILEECRIPRPAGQTVFTAEEAKKAAGELGY 703

Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186
           P +++P       G+ +   DQ I   +   +       +L+++Y+ G E+    + D  
Sbjct: 704 PVLVRPSYVLGGQGMQIAISDQDIDEFMGIINQIAQEHPILVDKYIPGKEIEVDAVCDGE 763

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISR 245
             +    +   +           +S  + PA+ I   + +++        +A+  +G+  
Sbjct: 764 DILIPGIMEHMERAGVHS----GDSISIYPAQSISEAVKEKLVEYTKRLSRALHVKGMIN 819

Query: 246 SDFLFDPLSRKVFWLEINV 264
             F+      +V+ +E+N 
Sbjct: 820 IQFIV--SGEEVYVIEVNP 836



 Score = 62.8 bits (152), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 49/289 (16%), Positives = 100/289 (34%), Gaps = 39/289 (13%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQID-------VDRSVG--------------LV 45
           G ++E + +   G     +L++ G +V  ++        D+ +                +
Sbjct: 21  GQAAEFDYA---GTQACRSLKEEGIEVVLLNSNPATIMTDKDIADKVYIEPLTVEVVEQL 77

Query: 46  LAHLKPDLAFNVLHGNFG-------EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQ 98
           +   +PD     L G  G       ED   +  L+  ++    +  L    + D+   K+
Sbjct: 78  ILKERPDSVLPTLGGQAGLNLAMELED---RGFLKEHKVRLIGTTALTIKKAEDRELFKE 134

Query: 99  VVSSCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
            +   G PV PS +V      +     I  P V++P       G  + +        L  
Sbjct: 135 TMEKIGEPVAPSDIVEHVEDGLKVAEKIGYPVVLRPAYTLGGSGGGIAENPVQCREILEN 194

Query: 157 SSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215
               +   Q+L+E+ + G  E+   VM D + +V  I V   +       ++  +     
Sbjct: 195 GLRLSRVGQVLVERCIAGWKEIEYEVMRDGAGNV--ITVCNMENIDPVGVHTGDSIVVAP 252

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              +    Y+ ++  A      +G  G     +   P S +   +E+N 
Sbjct: 253 SQTLGDKEYQMLRTSALKIISELGITGGCNVQYALHPESFEYCVIEVNP 301


>gi|319764333|ref|YP_004128270.1| acetyl-CoA carboxylase, biotin carboxylase [Alicycliphilus
           denitrificans BC]
 gi|330826369|ref|YP_004389672.1| acetyl-CoA carboxylase, biotin carboxylase [Alicycliphilus
           denitrificans K601]
 gi|317118894|gb|ADV01383.1| acetyl-CoA carboxylase, biotin carboxylase [Alicycliphilus
           denitrificans BC]
 gi|329311741|gb|AEB86156.1| acetyl-CoA carboxylase, biotin carboxylase [Alicycliphilus
           denitrificans K601]
          Length = 449

 Score = 75.5 bits (185), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 38/226 (16%), Positives = 83/226 (36%), Gaps = 29/226 (12%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+      +E     +      +  +  DK+ +KQ +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAERVEKSGFQFIGPTPESIRMMGDKVSAKQAMIRAGVPCVPGSDG 136

Query: 111 ------ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSW 160
                 + + R        I  P +IK   GG   G+ V+  + ++   +     ++ + 
Sbjct: 137 ELPDDPVQIRR----IAKTIGYPVIIKAAGGGGGRGMRVVHTEAALVNAVQMTKAEAQAA 192

Query: 161 NHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK- 218
                + +E+++ +   +   V+ D   +   +            K          PA  
Sbjct: 193 FGNPAVYMEKFLQNPRHIEIQVLADKYRNAVYLGERDCSMQRRHQK-----VIEEAPAPG 247

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           IP  + +++      A + IG RG    +FL+   + + +++E+N 
Sbjct: 248 IPRKLIEKIGERCVAACKKIGYRGAGTFEFLY--ENGEFYFIEMNT 291


>gi|292492139|ref|YP_003527578.1| carbamoyl-phosphate synthase L chain ATP-binding protein
           [Nitrosococcus halophilus Nc4]
 gi|291580734|gb|ADE15191.1| Carbamoyl-phosphate synthase L chain ATP-binding protein
           [Nitrosococcus halophilus Nc4]
          Length = 472

 Score = 75.5 bits (185), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 75/221 (33%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+  +    E   I +            DK+ ++  + + G+P+ P    
Sbjct: 76  AIHPGYGFLSENPHLAERCEQYGIRFVGPPAQVIHRLGDKIEARHTMEAAGIPIVPGSHT 135

Query: 114 NRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGDQ 165
           +   +D        I  P ++K   GG   GI        +       + ++       +
Sbjct: 136 SLGGVDEALSLAEQIGYPVMLKATAGGGGRGIRRCNSPLELSRNYERVVSEAQKAFGSTK 195

Query: 166 LLIEQ-YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDI 223
           + +E+  V+   +   V+ D       +            K        + P  ++    
Sbjct: 196 VFLEKCVVNPRHIEVQVLADHQGHAIHLFERDCSIQRRHQKL-----IEIGPSPQLSEKQ 250

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              + +LA  A +A+G R     +FL D      +++E+N 
Sbjct: 251 RATIGKLAVKACRAVGYRNAGTVEFLLDAQGN-FYFMEMNT 290


>gi|257055680|ref|YP_003133512.1| acetyl/propionyl-CoA carboxylase, alpha subunit [Saccharomonospora
           viridis DSM 43017]
 gi|256585552|gb|ACU96685.1| acetyl/propionyl-CoA carboxylase, alpha subunit [Saccharomonospora
           viridis DSM 43017]
          Length = 666

 Score = 75.5 bits (185), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 34/216 (15%), Positives = 76/216 (35%), Gaps = 18/216 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      +    + +      +      K+ SK++ +S GVPV     +
Sbjct: 77  AVHPGYGFLSENADFARAVSAAGLTWVGPSPDSIERMGSKVESKRLAASVGVPV-----L 131

Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN----HGDQLLIE 169
                ++      P ++K   GG   G+ V+    ++   +  + +          +  E
Sbjct: 132 AELDPETVTDDEFPVLVKASAGGGGRGMRVVHDRGALAEAVESARAEAGSAFGDPTVFCE 191

Query: 170 QYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           +Y++ G  +   V+ D+   V  +   +        K             +   + + + 
Sbjct: 192 RYLERGRHVEIQVLADSHGTVWALGERECSIQRRHQK----VVEEAPSPAVDPALRERLC 247

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             A    +A+   G    +FL  P   + F+LE+N 
Sbjct: 248 EAARTVARAVDYVGAGTVEFLVTP-DGEFFFLEMNT 282


>gi|291457110|ref|ZP_06596500.1| acetyl-CoA carboxylase alpha chain [Bifidobacterium breve DSM
           20213]
 gi|291380945|gb|EFE88463.1| acetyl-CoA carboxylase alpha chain [Bifidobacterium breve DSM
           20213]
          Length = 643

 Score = 75.5 bits (185), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 39/199 (19%), Positives = 73/199 (36%), Gaps = 12/199 (6%)

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPY 128
           E     +      A     DK+ +++V     VP  P     +   R  +D  H    P 
Sbjct: 120 EDAGAIWVGPHHTALVDLGDKITARRVALRAKVPPVPGLSEPVTDVRTLLDFAHTHGYPI 179

Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD--QLLIEQYVD-GIELTCGVMGDA 185
           ++K   GG   GI V+  D+ +    +   +   GD  +  IE++VD    +      D+
Sbjct: 180 MMKRTDGGGGHGITVVHDDEELRRFYMNHDALQGGDLKEYFIEKFVDKARHVETQSGRDS 239

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
             + T  +           K             +P +I   ++  +      +G  G+  
Sbjct: 240 HGNFTVYSTRDCSLQRRNQK----LVEEAPAPFLPEEIVSTLEEYSRRLFTTVGYVGLGT 295

Query: 246 SDFLFDPLSRKVFWLEINV 264
            +F+  P + KV++LE+N 
Sbjct: 296 CEFMVTP-NGKVYFLEVNP 313


>gi|86749487|ref|YP_485983.1| carbamoyl-phosphate synthase L chain, ATP-binding [Rhodopseudomonas
           palustris HaA2]
 gi|86572515|gb|ABD07072.1| Carbamoyl-phosphate synthase L chain, ATP-binding [Rhodopseudomonas
           palustris HaA2]
          Length = 671

 Score = 75.5 bits (185), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 76/221 (34%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H  +G   E      IL    I +      A A   DK+ SK+  +   V   P  L 
Sbjct: 77  AVHPGYGFLSERESFPRILADAGIVFIGPNAGAIAAMGDKIESKKAAAKANVSTVPGYLG 136

Query: 113 ---VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSWNHGDQ 165
                   +     I  P +IK   GG   G+ +      +     L   ++ +    D+
Sbjct: 137 VIEDATHAVKIADEIGYPVMIKASAGGGGKGMRIAHSTSEVAEGFNLAKAEAKASFGDDR 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+++ D   +   V+GD   +V  +   +        K          P+ +  ++ 
Sbjct: 197 VFIEKFIVDPRHIEIQVLGDKHGNVIYLGERECSIQRRNQK-----VIEEAPSPLLDEVT 251

Query: 225 KE-VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +  +   A    +A+        +F      +  ++LE+N 
Sbjct: 252 RRKMGEQAVALAKAVQYDSAGTVEF-VAGQDKSFYFLEMNT 291


>gi|150388416|ref|YP_001318465.1| pyruvate carboxylase [Alkaliphilus metalliredigens QYMF]
 gi|149948278|gb|ABR46806.1| pyruvate carboxylase [Alkaliphilus metalliredigens QYMF]
          Length = 1146

 Score = 75.5 bits (185), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 37/223 (16%), Positives = 80/223 (35%), Gaps = 23/223 (10%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       E   I +     +      DK++SK V  + GVPV P   V
Sbjct: 82  AIHPGYGFLAENPEFSKKCEEAGIEFIGPTHVMIEQLGDKIQSKLVAKAAGVPVIPG--V 139

Query: 114 NRFTMDSQHLI------SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS-----SWNH 162
            +   D    +        P ++K   GG   G+ ++ +++ +    L +      ++  
Sbjct: 140 EKPIADEAQALRFAGECGYPVMLKAAAGGGGRGMRIVTQEEDLVESFLSARSEAKKAFGI 199

Query: 163 GDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL 221
              + IE+Y++    +   ++GD   ++  +            K             +  
Sbjct: 200 DS-IFIEKYIEKPKHIEVQILGDKYGNIVHLLERDCSIQRRHQK----LIEFAPAVSLSQ 254

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +  + +   A    +A+  R     +FL D      +++E+N 
Sbjct: 255 EKREAICHDALKIARAVHYRNAGTVEFLVDAHGDH-YFIEMNP 296


>gi|73982895|ref|XP_852197.1| PREDICTED: similar to Pyruvate carboxylase, mitochondrial precursor
           (Pyruvic carboxylase) (PCB) isoform 2 [Canis familiaris]
          Length = 1186

 Score = 75.5 bits (185), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 32/233 (13%), Positives = 75/233 (32%), Gaps = 17/233 (7%)

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
            +  V      D      +G   E        +   + +            DK+ ++ + 
Sbjct: 101 DIIKVAKENNVDAVHPG-YGFLSERADFAQACQDAGVRFIGPSPEVVRKMGDKVEARAIA 159

Query: 101 SSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL---- 152
            + GVPV P     I       +  +    P + K   GG   G+ V+   + +      
Sbjct: 160 IAAGVPVVPGTDAPITSLHEAHEFSNTYGFPIIFKAAYGGGGRGMRVVHSYEELEESYNR 219

Query: 153 DLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
              ++ +      L +E++++    +   ++GD   ++  +            K      
Sbjct: 220 AYSEALAAFGNGALFVEKFIEKPRHIEVQILGDQYGNILHLYERDCSIQRRHQK-----V 274

Query: 212 THVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
             + P A +   +   +   +    + +G       +FL D   R  +++E+N
Sbjct: 275 VEIAPAAHLDPQLRTRLTSDSVKLAKQVGYENAGTVEFLVDRHGRH-YFIEVN 326


>gi|42527711|ref|NP_972809.1| CarB family protein [Treponema denticola ATCC 35405]
 gi|41818539|gb|AAS12728.1| CarB family protein [Treponema denticola ATCC 35405]
          Length = 543

 Score = 75.5 bits (185), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 52/264 (19%), Positives = 104/264 (39%), Gaps = 36/264 (13%)

Query: 19  GKACASALEDAGFKVSQID----------VDRSVGLVLAHLK--PDLAFNV----LHGNF 62
           G A  +A ++ G +V  +D           D+   + L  +    DLA N+    LHG F
Sbjct: 3   GPAIRAA-KELGCEVIAVDGNPNAVCAKEADKFFPIDLKDIPALIDLAKNLKEKGLHGVF 61

Query: 63  --GEDGLV--QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
               D  V   AI E   +P     + A+  + DK+  ++     GVP      + +  +
Sbjct: 62  TAATDFSVSVAAIAESCSLP--GHSLEAARRASDKVLMRECFEKHGVPSPKFTHIFKNEI 119

Query: 119 DS------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
           D       Q  I  P  +KP     + G  ++     +   L  + +++   + + E+++
Sbjct: 120 DEALQILKQKAIPFPITVKPADNMGARGCRLVYSQDELRPALEDAVNFSRSGKAIAEEFI 179

Query: 173 DGIELTC-GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           +G E +   ++ +  + +  +A     F  Y ++       H +P+    +   E+ R+ 
Sbjct: 180 EGEEFSLEALVINGEIFLNALADRHIFFPPYFVEMG-----HTIPSIKSKEECDELIRVF 234

Query: 232 FLAHQAIGC-RGISRSDFLFDPLS 254
           FL  +A+G   G ++ D       
Sbjct: 235 FLGIKALGLTNGAAKGDIFLRKAD 258


>gi|294501033|ref|YP_003564733.1| biotin carboxylase [Bacillus megaterium QM B1551]
 gi|294350970|gb|ADE71299.1| biotin carboxylase [Bacillus megaterium QM B1551]
          Length = 450

 Score = 75.5 bits (185), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 33/199 (16%), Positives = 72/199 (36%), Gaps = 16/199 (8%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIK 131
              +        ++  DK+ ++  +   GVPV P     +           LI  P ++K
Sbjct: 98  GFCFIGPSPEIISMMGDKIAARAAMKEAGVPVVPGSQGDVTSVEEACKVASLIGYPVMLK 157

Query: 132 PLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGDQLLIEQYVD-GIELTCGVMGDAS 186
              GG  +G++    ++++         ++ ++   + + IE+ +     +   V GD  
Sbjct: 158 ASGGGGGIGMVRCDNEEAVKQVYASTKARAKAYFGQEGMFIEKLITNAKHIEVQVFGDQH 217

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISR 245
            +V              ++  +       PA  +     + +Q  A  A +AIG      
Sbjct: 218 GNVV-----HLFERDCSVQRRNQKVIEEAPALSLKESTRQAMQNQAVQAAKAIGYYNAGT 272

Query: 246 SDFLFDPLSRKVFWLEINV 264
            +F+ D      ++LE+N 
Sbjct: 273 VEFIVDEDEN-FYFLEMNT 290


>gi|228478416|ref|ZP_04063024.1| carbamoyl-phosphate synthase, large subunit [Streptococcus
           salivarius SK126]
 gi|228250095|gb|EEK09365.1| carbamoyl-phosphate synthase, large subunit [Streptococcus
           salivarius SK126]
          Length = 1059

 Score = 75.5 bits (185), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 27/217 (12%), Positives = 73/217 (33%), Gaps = 20/217 (9%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYV 129
           L    +    + +     + D+   +Q +    +P  P           ++   I  P +
Sbjct: 646 LSKAGVKILGTQVADLDRAEDRDLFEQALKDLDIPQPPGQTATNEEEAVEAARKIGFPVL 705

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS--- 186
           ++P        + +++ +  +   +  +   +    +L++ Y+ G E     + D     
Sbjct: 706 VRPSYVLGGRAMEIVENEDDLRSYMRTAVKASPDHPVLVDSYIIGRECEVDAISDGKDVL 765

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISR 245
           +      + ++  +S        +S  V P + +   I + +          + C G+  
Sbjct: 766 IPGIMEHIERAGVHS-------GDSMAVYPPQTLSKKIQETIADYTKRLAIGLNCIGMMN 818

Query: 246 SDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277
             F+       V+ +E+N       P ++ V+  P  
Sbjct: 819 IQFVI--KDETVYVIEVNPRASRTVPFLSKVTDIPMA 853



 Score = 73.2 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 51/296 (17%), Positives = 107/296 (36%), Gaps = 34/296 (11%)

Query: 25  ALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNVLHGNFG 63
           AL++ G+ V  ++        D+ +                +L   +PD     L G  G
Sbjct: 36  ALKEEGYSVVLVNSNPATIMTDKEIADKVYIEPITLEFVTRILRKERPDALLPTLGGQTG 95

Query: 64  EDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFT 117
            +  ++     ILE L +    + + A   + D+   KQ++     P+  S +VN     
Sbjct: 96  LNMAMELSKAGILEELGVELLGTKLSAIDQAEDRDLFKQLMEDLEQPIPESEIVNTVEEA 155

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IE 176
           +     I  P +++P       G  +   ++ +          +   Q LIE+ + G  E
Sbjct: 156 VAFASEIGYPVIVRPAFTLGGTGGGMCANEEELREIAENGLKLSPVTQCLIERSIAGFKE 215

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +   VM DA+ +   + V   + +     ++  +        +     + ++  +    +
Sbjct: 216 IEYEVMRDAADNA--LVVCNMENFDPVGIHTGDSIVFAPTQTLSDIENQMLRDASLKIIR 273

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           A+   G        DP S K + +E+N  P ++  S     +   GY   +L   +
Sbjct: 274 ALKIEGGCNVQLALDPNSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAKI 325


>gi|126728930|ref|ZP_01744745.1| propionyl-CoA carboxylase, alpha subunit [Sagittula stellata E-37]
 gi|126710860|gb|EBA09911.1| propionyl-CoA carboxylase, alpha subunit [Sagittula stellata E-37]
          Length = 666

 Score = 75.5 bits (185), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 76/221 (34%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      LE   + +    + A     DK+ SK++    GV   P  + 
Sbjct: 77  AVHPGYGFLSENPKFAQALETASVAFIGPPVKAIEAMGDKITSKKIAQEAGVSTVPGYMG 136

Query: 114 NRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGD 164
                +      + I  P +IK   GG   G+ +   D              ++S+   D
Sbjct: 137 LIEDAEEAVKISNEIGYPVMIKASAGGGGKGMRIAWNDSEAREGFQSSKNEAANSFG-DD 195

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           ++ IE++V     +   V+ DA  +   +   +        K             +  + 
Sbjct: 196 RIFIEKFVTQPRHIEIQVLCDAHGNGIYLNERECSIQRRNQK----VVEEAPSPFLDAET 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            K +   +    +A+G       +F+ D      ++LE+N 
Sbjct: 252 RKAMGEQSVALAKAVGYTSAGTVEFIVDGEKN-FYFLEMNT 291


>gi|73982897|ref|XP_540825.2| PREDICTED: similar to Pyruvate carboxylase, mitochondrial precursor
           (Pyruvic carboxylase) (PCB) isoform 1 [Canis familiaris]
          Length = 1178

 Score = 75.5 bits (185), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 32/233 (13%), Positives = 75/233 (32%), Gaps = 17/233 (7%)

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
            +  V      D      +G   E        +   + +            DK+ ++ + 
Sbjct: 101 DIIKVAKENNVDAVHPG-YGFLSERADFAQACQDAGVRFIGPSPEVVRKMGDKVEARAIA 159

Query: 101 SSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL---- 152
            + GVPV P     I       +  +    P + K   GG   G+ V+   + +      
Sbjct: 160 IAAGVPVVPGTDAPITSLHEAHEFSNTYGFPIIFKAAYGGGGRGMRVVHSYEELEESYNR 219

Query: 153 DLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
              ++ +      L +E++++    +   ++GD   ++  +            K      
Sbjct: 220 AYSEALAAFGNGALFVEKFIEKPRHIEVQILGDQYGNILHLYERDCSIQRRHQK-----V 274

Query: 212 THVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
             + P A +   +   +   +    + +G       +FL D   R  +++E+N
Sbjct: 275 VEIAPAAHLDPQLRTRLTSDSVKLAKQVGYENAGTVEFLVDRHGRH-YFIEVN 326


>gi|55820608|ref|YP_139050.1| carbamoyl phosphate synthase large subunit [Streptococcus
           thermophilus LMG 18311]
 gi|55822498|ref|YP_140939.1| carbamoyl phosphate synthase large subunit [Streptococcus
           thermophilus CNRZ1066]
 gi|116627411|ref|YP_820030.1| carbamoyl phosphate synthase large subunit [Streptococcus
           thermophilus LMD-9]
 gi|81820333|sp|Q5M0W9|CARB_STRT1 RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|81820496|sp|Q5M5F6|CARB_STRT2 RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|122267990|sp|Q03LT8|CARB_STRTD RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|55736593|gb|AAV60235.1| carbamoyl phosphate synthetase, large chain [Streptococcus
           thermophilus LMG 18311]
 gi|55738483|gb|AAV62124.1| carbamoyl phosphate synthetase, large chain [Streptococcus
           thermophilus CNRZ1066]
 gi|116100688|gb|ABJ65834.1| carbamoyl-phosphate synthase large subunit [Streptococcus
           thermophilus LMD-9]
          Length = 1059

 Score = 75.5 bits (185), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 27/217 (12%), Positives = 73/217 (33%), Gaps = 20/217 (9%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYV 129
           L    +    + +     + D+   +Q +    +P  P           ++   I  P +
Sbjct: 646 LSKAGVKILGTQVADLDRAEDRDLFEQALKDLDIPQPPGQTATNEEEAVEAARKIGFPVL 705

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS--- 186
           ++P        + +++ +  +   +  +   +    +L++ Y+ G E     + D     
Sbjct: 706 VRPSYVLGGRAMEIVENEDDLRSYMRTAVKASPDHPVLVDSYIIGRECEVDAISDGKDVL 765

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISR 245
           +      + ++  +S        +S  V P + +   I + +          + C G+  
Sbjct: 766 IPGIMEHIERAGVHS-------GDSMAVYPPQTLSKKIQETIADYTKRLAIGLNCIGMMN 818

Query: 246 SDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277
             F+       V+ +E+N       P ++ V+  P  
Sbjct: 819 IQFVI--KDETVYVIEVNPRASRTVPFLSKVTDIPMA 853



 Score = 71.3 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 50/296 (16%), Positives = 106/296 (35%), Gaps = 34/296 (11%)

Query: 25  ALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNVLHGNFG 63
           AL++ G+ V  ++        D+ +                +L   +PD     L G  G
Sbjct: 36  ALKEEGYSVVLVNSNPATIMTDKEIADKVYIEPITLEFVTRILRKERPDALLPTLGGQTG 95

Query: 64  EDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFT 117
            +  ++     IL+ L +    + + A   + D+   KQ++     P+  S +VN     
Sbjct: 96  LNMAMELSKAGILDELGVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIVNTVEEA 155

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IE 176
           +     I  P +++P       G  +   ++ +          +   Q LIE+ + G  E
Sbjct: 156 VAFATEIGYPVIVRPAFTLGGTGGGMCANEEELREIAENGLKLSPVTQCLIERSIAGFKE 215

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +   VM DA  +   + V   + +     ++  +        +     + ++  +    +
Sbjct: 216 IEYEVMRDAEDNA--LVVCNMENFDPVGIHTGDSIVFAPTQTLSDIENQMLRDASLKIIR 273

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           A+   G        DP S K + +E+N  P ++  S     +   GY   +L   +
Sbjct: 274 ALKIEGGCNVQLALDPHSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAKI 325


>gi|332283353|ref|YP_004415264.1| carbamoyl phosphate synthase large subunit [Pusillimonas sp. T7-7]
 gi|330427306|gb|AEC18640.1| carbamoyl phosphate synthase large subunit [Pusillimonas sp. T7-7]
          Length = 1080

 Score = 75.5 bits (185), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 40/262 (15%), Positives = 97/262 (37%), Gaps = 27/262 (10%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ------ 69
           AL D  ++   +         D D S  L    L  +    ++H       +VQ      
Sbjct: 589 ALRDDDYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVHKENPVGMIVQYGGQTP 648

Query: 70  ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL-- 123
                 LE   +P   +   +  ++ D+ R +++++  G+   P+           H   
Sbjct: 649 LKLARALEANGVPIIGTSPESIDVAEDRERFQKLLNKLGLRQPPNRTARTEGEALAHATE 708

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVM 182
           I  P V++P        + ++ + Q +   + ++   ++   +L++ ++ +  E+    +
Sbjct: 709 IGYPLVVRPSYVLGGRAMEIVHEQQDLERYMREAVKVSNDSPVLLDHFLNNATEVDVDCI 768

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D  +      +   +       +S  ++  + P  +  +I  E++R   L  +A+  +G
Sbjct: 769 ADGEVVFIGGVMEHIEQAGV---HSGDSACSLPPYSLSQEIIAEIKRQTELMARALNVKG 825

Query: 243 ISRSDFLFDPLSRKVFWLEINV 264
           +    F        V+ LE+N 
Sbjct: 826 LMNVQFAI--QDGDVYVLEVNP 845



 Score = 59.8 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 51/285 (17%), Positives = 99/285 (34%), Gaps = 42/285 (14%)

Query: 18  SGKACASALEDAGF-------------------KVSQIDVD--RSVGLVLAHLKPDLAFN 56
           SG     AL+  GF                    V+ I+    ++V  ++   KPD    
Sbjct: 29  SGAQACKALKADGFRTILVNSNPATIMTDPETADVTYIEPITWQAVEKIIEREKPDALLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      +LE   +    +   A   + D+ + KQ ++  G+    S +
Sbjct: 89  TMGGQTALNCALDLVHNGVLEKHGVELIGANEHAIEKAEDRQKFKQAMNDIGLESAKSGV 148

Query: 113 ---------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
                    V R   D       P VI+P       G  +    +       +    +  
Sbjct: 149 AHSMDEAWEVQRRIGDEAGNSGFPVVIRPSFTMGGSGGGIAYNSEEFESICRRGLEASPT 208

Query: 164 DQLLIEQYVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IP 220
           ++LLIE+ + G  E    V+ D+  + +   ++   D           +S  V PA+ + 
Sbjct: 209 NELLIEESLLGWKEFEMEVVRDSVDNCIIVCSIENLDPMGVHT----GDSITVAPAQTLT 264

Query: 221 LDIYKEVQRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
              Y+ ++  +    + IG   G S   F  +P   ++  +E+N 
Sbjct: 265 DKEYQIMRNASIAVLREIGVDTGGSNVQFAVNPQDGRMIVIEMNP 309


>gi|320107251|ref|YP_004182841.1| acetyl-CoA carboxylase, biotin carboxylase [Terriglobus saanensis
           SP1PR4]
 gi|319925772|gb|ADV82847.1| acetyl-CoA carboxylase, biotin carboxylase [Terriglobus saanensis
           SP1PR4]
          Length = 457

 Score = 75.5 bits (185), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 30/220 (13%), Positives = 80/220 (36%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     +     I +       + +  +K  ++Q +    VP+ P    
Sbjct: 77  AIHPGYGLLSENANFAEVCRASNIKFIGPPPEVTRMMGEKSTARQTMKKAKVPILPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSWNHGDQ 165
            I      ++    +  P ++K + GG   G+ + +    +P        ++ +      
Sbjct: 137 VIAGADEALEWAKSVGYPVILKAVAGGGGRGMRICRNKDELPGLYNQASQEALNAFGNGD 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           L +E++++    +   V+ D   +V  +   +        K            ++  ++ 
Sbjct: 197 LYMEKFIERPRHIEFQVLADEHGNVMSLGERECSIQRRHQK----LIEEAPSLQVSPELR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K++  +   + + IG       +FL D     ++++E+N 
Sbjct: 253 KKLGGVIEKSLKEIGYWNAGTIEFLMDE-DGSIYFIEMNT 291


>gi|319760428|ref|YP_004124366.1| biotin carboxylase [Candidatus Blochmannia vafer str. BVAF]
 gi|318039142|gb|ADV33692.1| biotin carboxylase [Candidatus Blochmannia vafer str. BVAF]
          Length = 453

 Score = 75.5 bits (185), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 38/224 (16%), Positives = 81/224 (36%), Gaps = 24/224 (10%)

Query: 58  LHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
           +H  +G   E+      +E     +         L  +K+ +  ++   G+   P   + 
Sbjct: 78  IHPGYGFLSENADFAEQVERSGFIFIGPNSETMRLMSNKISAISIMKKVGIKSVPGQDLK 137

Query: 115 RFT-------MDSQHL-ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH---- 162
                     M+S H+ I+ P +IK   G   LG+ V++K   +   +  + S +     
Sbjct: 138 INEKINNIPYMNSNHININYPVIIKSAYGAGGLGMCVVRKKNDLQNAIKLAKSESKKIFN 197

Query: 163 GDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIP 220
            D + IE+Y++    +   ++ D   +   +            K          PA  I 
Sbjct: 198 NDSIYIERYLENPRHIEVQILSDGKGNAIYLTERDCSIQRRHQK-----VIEETPASGIT 252

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            ++   +          IG RG+   +FL++      +++E+N 
Sbjct: 253 PEMRMFLGERCVQVCCEIGYRGVGTFEFLYENDD--FYFIEMNT 294


>gi|295113098|emb|CBL31735.1| Carbamoylphosphate synthase large subunit (split gene in MJ)
           [Enterococcus sp. 7L76]
          Length = 416

 Score = 75.5 bits (185), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 50/296 (16%), Positives = 108/296 (36%), Gaps = 34/296 (11%)

Query: 25  ALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNVLHGNFG 63
           AL++ G++V  ++        D+ +                +L   +PD     L G  G
Sbjct: 36  ALKEEGYEVVLVNSNPATIMTDKEIADHVYIEPITLEFVSRILRKERPDALLPTLGGQTG 95

Query: 64  EDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFT 117
            +  ++     IL+ L +    + + A   + D+   KQ++     P+  S +VN     
Sbjct: 96  LNMAMELSESGILDELNVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIVNTVEQA 155

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IE 176
           +     I  P +++P       G  +   ++ +          +   Q LIE+ + G  E
Sbjct: 156 VAFAKRIGYPIIVRPAFTLGGTGGGMCDTEEELRQIAENGLKLSPVTQCLIEKSIAGFKE 215

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +   VM D++ +   I V   + +     ++  +        +    Y+ ++  +    +
Sbjct: 216 IEYEVMRDSADNA--IVVCNMENFDPVGIHTGDSIVFAPSQTLSDYEYQMLRDASLKIIR 273

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           A+   G        DP S   + +E+N  P ++  S     +   GY   +L   +
Sbjct: 274 ALKIEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAKI 325


>gi|330502938|ref|YP_004379807.1| carbamoyl-phosphate synthase L chain, ATP-binding protein
           [Pseudomonas mendocina NK-01]
 gi|328917224|gb|AEB58055.1| carbamoyl-phosphate synthase L chain, ATP-binding protein
           [Pseudomonas mendocina NK-01]
          Length = 662

 Score = 75.5 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 73/220 (33%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       E   I +    + A  L   K  SK  +   GVP  P    
Sbjct: 79  AIHPGYGFLSENADFARACEAAGIVFIGPTVEAIHLMGSKRLSKIAMLEAGVPCIPGYEG 138

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS-----SWNHGD 164
                +        I  P +IK   GG   G+ ++ +   +   +  +      ++  G+
Sbjct: 139 AAQDDETLASEAERIGYPLMIKASAGGGGRGMRLVHESAELLGQIRTARSEAQNAFGSGE 198

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
            +L    +    +   V GD   ++  +            K             +  ++ 
Sbjct: 199 LILERAVIRPRHVEIQVFGDQHGNIVYLGERDCSVQRRHQK----VVEEAPCPVMTPELR 254

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K + + A  A  ++   G    +FL D    + F+LE+N 
Sbjct: 255 KAMGKAAVKAAASVNYVGAGTVEFLLDAS-GEFFFLEMNT 293


>gi|315658122|ref|ZP_07910994.1| acetyl-CoA carboxylase, biotin carboxylase [Staphylococcus
           lugdunensis M23590]
 gi|315496451|gb|EFU84774.1| acetyl-CoA carboxylase, biotin carboxylase [Staphylococcus
           lugdunensis M23590]
          Length = 453

 Score = 75.5 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 83/220 (37%), Gaps = 18/220 (8%)

Query: 56  NVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
           N +H  +G   E       +E  +I +         L  DK+ ++Q V + GVPV P   
Sbjct: 75  NAIHPGYGFLSESTTFAEKVEENDIHFIGPNKKTMELMGDKITARQTVDAAGVPVIPGSK 134

Query: 111 -ILVNRFTMDS-QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS----WNHGD 164
             + N   ++     I  P V+K   GG   GI ++K    +   L ++ S    + +  
Sbjct: 135 DAVNNVSEIEKLAEDIGYPVVLKAASGGGGKGIRIVKDPADLEKSLKEAQSEGQKYFNDS 194

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           ++ +E ++     +   V+GD   +   +            + +         A +  + 
Sbjct: 195 RVYVEAFIPVAKHVEVQVIGDGKDNYVHLGERDCSV----QRKNQKLIEESPCAALTEER 250

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            +++   A    +A   R     +FL    +   +++E+N
Sbjct: 251 REKICNDAVKVARASKYRSAGTIEFLVTEDAH--YFIEMN 288


>gi|258515564|ref|YP_003191786.1| carbamoyl-phosphate synthase, large subunit [Desulfotomaculum
           acetoxidans DSM 771]
 gi|257779269|gb|ACV63163.1| carbamoyl-phosphate synthase, large subunit [Desulfotomaculum
           acetoxidans DSM 771]
          Length = 1074

 Score = 75.5 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 46/294 (15%), Positives = 100/294 (34%), Gaps = 38/294 (12%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ------ 69
           AL +AG +   I         D D +  L    + P+   N+L     E  +VQ      
Sbjct: 585 ALREAGIEAIIINNNPETVSTDFDTADRLYFEPMLPEDVLNILENEKPEGVIVQFGGQTA 644

Query: 70  ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHL 123
                 LE   I    + +     + D+ R  +++S   +P      V   T        
Sbjct: 645 INLAKPLENAGIKILGTSVENIDRAEDRERFDRLLSKLNIPRPAGNTVFSVTEAIGVADE 704

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + ++  +  +   +  +        +L+++Y+ G EL    + 
Sbjct: 705 IGYPVLVRPSYVLGGRAMEIVYNEIDLLNYMASAVKVTPEHPVLVDKYLCGKELEVDAIS 764

Query: 184 DAS---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIG 239
           D     +      + ++  +S        +S  V P + +   I   +        + + 
Sbjct: 765 DGKDVLIPGIMEHIERAGVHS-------GDSIAVYPPRNLSDRIRGLLVDYTTRLAKELN 817

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            +G+    ++      +++ LE+N +   T     P M+   G     L   ++
Sbjct: 818 VKGVINIQYVLHE--DQLYVLEVNPRSSRT----VPYMSKITGIPMVNLATKII 865



 Score = 73.6 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 53/288 (18%), Positives = 108/288 (37%), Gaps = 37/288 (12%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVS-----------------QIDVD----RSVGLV 45
           G ++E + +   G     AL + G +V                  +I +D      V  V
Sbjct: 21  GQAAEFDYA---GTQACRALREEGLEVVLVNSNPATIMTDSNMADRIYIDPLTPEFVTKV 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           L   KPD     L G  G +  +Q     +LE   +    + + +   + D+   K ++ 
Sbjct: 78  LKKEKPDGLLPTLGGQVGLNMALQLAKSGVLEETGVQLLGTPLESIIKAEDREGFKSMMQ 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
           S   P+  S +V+     +     +  P V++P       G  ++     +     +   
Sbjct: 138 SINEPIPESDIVSSVEDAVKFAERVGFPLVVRPAYTLGGTGGGMVYNMAELKSTATRGIR 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEI-AVPKSDFYSYELKYSSLNSTHVLPA 217
            +  +Q+L+E+ + G  E+   VM D+  +   I ++   D           +S  V P 
Sbjct: 198 HSIINQILVERSLVGWKEIEFEVMRDSMDNCITICSMENIDPMGIHT----GDSIVVAPC 253

Query: 218 K-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +    Y+ ++  +    +A+G  G     +  DP S + + +E+N 
Sbjct: 254 QTLSDKEYQMLRSASLKIIRALGVHGGCNVQYALDPDSFQYYVIEVNP 301


>gi|119717735|ref|YP_924700.1| pyruvate carboxylase [Nocardioides sp. JS614]
 gi|119538396|gb|ABL83013.1| pyruvate carboxylase [Nocardioides sp. JS614]
          Length = 1128

 Score = 75.5 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 39/246 (15%), Positives = 80/246 (32%), Gaps = 16/246 (6%)

Query: 28  DAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87
           + G  V       ++  V      D  +   +G   E+  +        I +        
Sbjct: 53  ERGHPVRAYLDPEAIVAVAIRAGADAVYPG-YGFLSENPALAEACANAGITFVGPTADVL 111

Query: 88  ALSMDKMRSKQVVSSCGVPVCPSILVNRFT---MDSQHLISPPYVIKPLKGGSSLGIIVI 144
            L+ +K R+    ++ GVP   S+  +      ++S   +  P  +K + GG   G+  +
Sbjct: 112 TLTGNKARAIAAATAAGVPTLASVEPSTDVDALVESAGELPYPLFVKAVAGGGGRGMRRV 171

Query: 145 KKDQSIPLDLL----QSSSWNHGDQLLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDF 199
                +   +     ++        + IEQ  VD   +   V+ D    V          
Sbjct: 172 DAPGQLREAVETCMREAEGAFGDPTVFIEQAVVDPRHIEVQVLADGEGHVM-----HLFE 226

Query: 200 YSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
               ++        + PA  +  ++   +   A    + IG R     +FL D       
Sbjct: 227 RDCSVQRRHQKVIEIAPAPNLDPELRDRICADAVRFAKEIGYRNAGTVEFLLDAK-GTYH 285

Query: 259 WLEINV 264
           ++E+N 
Sbjct: 286 FIEMNP 291


>gi|261855705|ref|YP_003262988.1| urea carboxylase [Halothiobacillus neapolitanus c2]
 gi|261836174|gb|ACX95941.1| urea carboxylase [Halothiobacillus neapolitanus c2]
          Length = 1208

 Score = 75.5 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 42/289 (14%), Positives = 94/289 (32%), Gaps = 25/289 (8%)

Query: 20  KACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPY 79
           +AC  A+   G   ++  +     L LA      A    +G   E+           I +
Sbjct: 56  RACDEAIALGGQTAAESYLQADRILALAKTHGVQAIIPGYGFLSENADFAERCAHEGIAF 115

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF---TMDSQHLISPPYVIKPLKGG 136
                        K R++++ ++  VP+ P   + +     +     I  P ++K   GG
Sbjct: 116 IGPTPNQLREFGLKHRARELATAAKVPLAPGSDLLKDLPAALHEAERIGYPIMLKSTAGG 175

Query: 137 SSLGIIVIKKD----QSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTE 191
             +G+     +     +        + +     + +E+++D    +   + GD    V  
Sbjct: 176 GGIGLKRCADEPALIDAFEAVAGMGARFFGDGGVFVERFIDHARHVEVQIFGDGKGRVVA 235

Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
           +            K             +P      +   A    ++I  +     ++++D
Sbjct: 236 LGERDCSLQRRNQK----VIEETPAPNLPAKTRAAMLASAERLGESIAYQSAGTVEYIYD 291

Query: 252 PLSRKVFWLEINVQPGMTPVSI---FPEMAAYAGYSFRELLLWMVEDAS 297
               + ++LE+N +       +    P      G    +L+ WMV  A+
Sbjct: 292 APRDEFYFLEVNTR-------LQVEHPITEEVTGV---DLIEWMVSLAA 330


>gi|289550627|ref|YP_003471531.1| Biotin carboxylase [Staphylococcus lugdunensis HKU09-01]
 gi|289180159|gb|ADC87404.1| Biotin carboxylase [Staphylococcus lugdunensis HKU09-01]
          Length = 453

 Score = 75.5 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 83/220 (37%), Gaps = 18/220 (8%)

Query: 56  NVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
           N +H  +G   E       +E  +I +         L  DK+ ++Q V + GVPV P   
Sbjct: 75  NAIHPGYGFLSESTTFAEKVEENDIHFIGPNKKTMELMGDKITARQTVDAAGVPVIPGSK 134

Query: 111 -ILVNRFTMDS-QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS----WNHGD 164
             + N   ++     I  P V+K   GG   GI ++K    +   L ++ S    + +  
Sbjct: 135 DAVNNVSEIEKLAEDIGYPVVLKAASGGGGKGIRIVKDPADLEKSLKEAQSEGQKYFNDS 194

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           ++ +E ++     +   V+GD   +   +            + +         A +  + 
Sbjct: 195 RVYVEAFIPVAKHVEVQVIGDGKDNYVHLGERDCSV----QRKNQKLIEESPCAALTEER 250

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            +++   A    +A   R     +FL    +   +++E+N
Sbjct: 251 REKICNDAVKVARASKYRSAGTIEFLVTEDAH--YFIEMN 288


>gi|326202902|ref|ZP_08192769.1| cyanophycin synthetase [Clostridium papyrosolvens DSM 2782]
 gi|325986979|gb|EGD47808.1| cyanophycin synthetase [Clostridium papyrosolvens DSM 2782]
          Length = 893

 Score = 75.5 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 55/118 (46%), Gaps = 3/118 (2%)

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSS 138
            S  +A  ++ DK  +K++++   +PV   ++V   +   ++   +  P VIKP+     
Sbjct: 203 GSSCIAVDIASDKQMTKKLLTDNNIPVPYGVVVRTEQEAFEAAAKVGFPLVIKPIDSNQG 262

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK 196
            G+  +       + +  S +  +  ++++E++V G +    V+GD    V E   P+
Sbjct: 263 KGVT-VNICSEDKIKVAFSEARKYSKKVIVERFVCGRDYRVLVVGDKVCAVAERRPPR 319


>gi|307637750|gb|ADN80200.1| Biotin carboxylase of acetyl-CoA carboxylase [Helicobacter pylori
           908]
 gi|325997939|gb|ADZ50147.1| Biotin carboxylase [Helicobacter pylori 2017]
          Length = 455

 Score = 75.2 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 38/225 (16%), Positives = 77/225 (34%), Gaps = 14/225 (6%)

Query: 49  LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
            + D  F   +G   E+     I     + +        AL  DK ++K V+   G+PV 
Sbjct: 84  FEADAIFPG-YGFLSENQNFVEICSHHSLEFIGPSAKVMALMSDKSKAKSVMKEAGMPVI 142

Query: 109 PS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSW 160
                 +   +   +    I  P +IK   GG   G+ V+     +         ++ S 
Sbjct: 143 EGSEGLLKSYQEAEEIADKIGYPVIIKAAAGGGGRGMRVVGDKSKLKNLYLAAETEALST 202

Query: 161 NHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI 219
                + +E+++     +   ++ D   +V  +          + K             +
Sbjct: 203 FGDGSVYLEKFINKPKHVEVQILADKHGNVIHVGERDCSVQRRQQKLI----EETPAVVL 258

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              + K +   A  A + IG  G    +FL D   +  +++E+N 
Sbjct: 259 EEGVRKRLLETAIKAAKYIGYVGAGTFEFLLDSNMKDFYFMEMNT 303


>gi|90419572|ref|ZP_01227482.1| acetyl/propionyl-CoA carboxylase alpha subunit [Aurantimonas
           manganoxydans SI85-9A1]
 gi|90336509|gb|EAS50250.1| acetyl/propionyl-CoA carboxylase alpha subunit [Aurantimonas
           manganoxydans SI85-9A1]
          Length = 671

 Score = 75.2 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 41/220 (18%), Positives = 75/220 (34%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E      +LE   I +      A     DK+ SK      GV + P    
Sbjct: 77  AVHPGYGFLSERASFCELLEENGIVFIGPKPKAIRAMGDKIESKLFAEKAGVNIVPGHMG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS----IPLDLLQSSSWNHGDQ 165
            I      +     I  P +IK   GG   G+ +   D            ++SS    D+
Sbjct: 137 IIEDPAEAVRIAGEIGYPVMIKASAGGGGKGMRIAWNDAECRDGFDRARSEASSSFGDDR 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+++ D   +   V+ D+  +   +   +        K             +  +  
Sbjct: 197 VFIEKFIVDPRHIEIQVLADSHGNAIHLGERECSIQRRNQK----VVEEAPSPYLDAETR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +   A    QA+  +     +F+ D   R  ++LE+N 
Sbjct: 253 RAMGEQAVALAQAVDYQSAGTVEFIVDA-ERNFYFLEMNT 291


>gi|322697946|gb|EFY89720.1| carbamoyl-phosphate synthase arginine-specific large chain
           [Metarhizium acridum CQMa 102]
          Length = 1170

 Score = 75.2 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 55/289 (19%), Positives = 106/289 (36%), Gaps = 37/289 (12%)

Query: 4   LMGGISSEREVSLSSGKACASALEDAGF--------------------KVSQIDVDRS-V 42
           L  G + E + S   G     AL++AG                     +V  + V    V
Sbjct: 104 LAIGQAGEFDYS---GSQALKALKEAGVASVLINPNIATIQTNHSLADEVYYLPVTPEYV 160

Query: 43  GLVLAHLKPDLAFNVLHG----NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQ 98
             V+   KPD  F    G    N G     Q + E   +    + +    +S D+    +
Sbjct: 161 SYVIEKEKPDGIFLSFGGQTALNLGVQMQRQGLFEKYGVKVLGTSVRTLEVSEDRDLFAK 220

Query: 99  VVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
            +    +P+  SI V+     +D+   +  P +++       LG      ++ +    + 
Sbjct: 221 ALEEINIPIAKSIAVSTVDEALDAAEKVGYPIIVRAAYALGGLGSGFANNEEELR--NMA 278

Query: 157 SSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215
           + S     Q+L+E+ + G  EL   V+ DA+ +   I V   + +   L   + +S  V 
Sbjct: 279 ARSLTLSPQILVEKSLKGWKELEYEVVRDANNN--CITVCNMENFD-PLGIHTGDSIVVA 335

Query: 216 PAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
           P++ +  + Y  ++  A    + +G  G     +   P       +E+N
Sbjct: 336 PSQTLSDEEYHMLRSAAIKIVRHLGVVGECNVQYALQPDGLDYRVIEVN 384



 Score = 58.6 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 32/201 (15%), Positives = 76/201 (37%), Gaps = 16/201 (7%)

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVI 130
           E        +       + D+ +  +++ S GV       +   +        +  P ++
Sbjct: 732 ETGGAKVLGTDPKDIDKAEDRQKFSEILDSIGVDQPAWKELTSVQAAEKFAEEVGYPVLV 791

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190
           +P    S   + VI+  + +   L  +S+ +    ++I ++++G +    +  DA     
Sbjct: 792 RPSYVLSGAAMTVIRSQEDLKEKLEAASNVSPDHPVVISKFIEGAQE---IDVDAVASKG 848

Query: 191 EIAVPKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRG-----IS 244
           E+ +     +  +    S ++T V  PA +   + + V+ +A    +A    G     I 
Sbjct: 849 ELIIHAVSEHVEQAGVHSGDATLVLPPANLDGAVMERVKDIAKKVAKAWNITGPFNMQII 908

Query: 245 RSDFLFDPLSRKV--FWLEIN 263
           ++D   DP   +     +E N
Sbjct: 909 KAD---DPEGGEPALKVIECN 926


>gi|322411552|gb|EFY02460.1| carbamoyl phosphate synthase large subunit [Streptococcus
           dysgalactiae subsp. dysgalactiae ATCC 27957]
          Length = 1058

 Score = 75.2 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 50/296 (16%), Positives = 107/296 (36%), Gaps = 34/296 (11%)

Query: 25  ALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNVLHGNFG 63
           AL++ G++V  ++        D+ +                +L   +PD     L G  G
Sbjct: 36  ALKEEGYQVILVNSNPATIMTDKEIADKVYIEPLTIEFVSRILRKERPDALLPTLGGQTG 95

Query: 64  EDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFT 117
            +  +Q     ILE L I    + + A   + D+ + KQ++     P+  S +V      
Sbjct: 96  LNMAMQLSKAGILEELGIELLGTKLSAIDQAEDRDQFKQLMEELEQPIPESEIVTSVEEA 155

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IE 176
           +     I  P +++P       G  +   +  +          +   Q LIE+ + G  E
Sbjct: 156 VAFAQTIGYPVIVRPAFTLGGTGGGMCANENELREIAESGLKLSPVTQCLIERSIAGFKE 215

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +   VM D++ +   + V   + +     ++  +        +    ++ ++  +    +
Sbjct: 216 IEYEVMRDSADNA--LVVCNMENFDPVGIHTGDSIVFAPTQTLSDSEHQMLRDASLNIIR 273

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           A+   G        DP S   + +E+N  P ++  S     +   GY   +L   +
Sbjct: 274 ALKIEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAKI 325



 Score = 74.0 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 41/293 (13%), Positives = 102/293 (34%), Gaps = 34/293 (11%)

Query: 24  SALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH-----G---NFGEDG 66
            A+++AG++   +         D   S  L    L  +   NV+      G    FG   
Sbjct: 579 KAIQEAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIDLEQPKGVVVQFGGQT 638

Query: 67  LV---QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQ 121
            +   QA+ E   +    + +     + ++ + ++ + + G+P  P          + + 
Sbjct: 639 AINLAQALSE-AGVTILGTQVDDLDRAENRDQFEKTLKALGIPQPPGQTATDEAEALAAA 697

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
                P +++P        + +++  + +   +  +   +    +LI+ Y+ G E     
Sbjct: 698 SHTGFPVLVRPSYVLGGRAMEIVENAEDLQRYMKTAVKASPEHPVLIDSYIVGKEFEVDA 757

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGC 240
           + D       I +P    +       S +S  V P + +   I + +          + C
Sbjct: 758 ISDGE----SILIPGIMEHIERAGVHSGDSMAVYPPQGLSKQIQETITDYTRRLAIGLNC 813

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            G+    F+      +V+ +E+N +   T     P ++        ++   ++
Sbjct: 814 IGMMNIQFVI--KDEQVYVIEVNPRASRT----VPFLSKVTNIPMAQVATKLI 860


>gi|302526050|ref|ZP_07278392.1| acetyl-CoA carboxylase, biotin carboxylase [Streptomyces sp. AA4]
 gi|302434945|gb|EFL06761.1| acetyl-CoA carboxylase, biotin carboxylase [Streptomyces sp. AA4]
          Length = 452

 Score = 75.2 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 37/200 (18%), Positives = 72/200 (36%), Gaps = 18/200 (9%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIK 131
            + +            DK+R++QV  + GVP  P     +      + +   I  P ++K
Sbjct: 98  GLTFVGPEASVIEQMGDKVRARQVAQAAGVPTVPGTPGGVSDVAEAVAAAGEIGYPIMLK 157

Query: 132 PLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGDQLLIEQYVDG-IELTCGVMGDA 185
              GG   GI V+  +  + +         +S++    ++ +E++V     +   V+GD 
Sbjct: 158 AAAGGGGRGIRVVANEAELKVAFPQASGEAASAFG-DGRMYLERFVRAARHVEVQVLGDG 216

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGIS 244
           S                 L+          P   I   I   +   A    + +G R   
Sbjct: 217 S------ETVHVFERECSLQRRRQKVVEEAPSPGIDERIRAGMTAAAVRLCKEVGYRSAG 270

Query: 245 RSDFLFDPLSRKVFWLEINV 264
             +FL D  + + F++E+N 
Sbjct: 271 TCEFLVDDDTGEFFFIEMNT 290


>gi|281423511|ref|ZP_06254424.1| phosphoribosylglycinamide formyltransferase 2 [Prevotella oris
           F0302]
 gi|281402331|gb|EFB33162.1| phosphoribosylglycinamide formyltransferase 2 [Prevotella oris
           F0302]
          Length = 387

 Score = 75.2 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 46/272 (16%), Positives = 89/272 (32%), Gaps = 49/272 (18%)

Query: 11  EREV-SLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ 69
           EREV S+  G A A+A+E                      +PD+    +     E     
Sbjct: 45  EREVFSMLDGDALAAAVEK--------------------HRPDIIVPEIEAIRTE----- 79

Query: 70  AILELLEIPYTHSGILASALSMD-----KMRSKQVVSSCGVPVCPSILVNRFTM--DSQH 122
               L +       ++ SA +++     +          G+          F     +  
Sbjct: 80  ---RLFDFEKQGIQVVPSARAVNFTMNRRAIRDLASRELGLRTAKYFYAKTFEEFKRAAD 136

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD--QLLIEQYVD-GIELTC 179
            I  P V+KPL   S  G   +  D  +     ++     GD  +++IE+++D   E T 
Sbjct: 137 EIGFPCVVKPLMSSSGHGQSYVHNDDELQAAFHEAMEEGRGDVKEVIIEEFIDFDSEFTL 196

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
             +   +                 ++          P  I  +  K+ Q +A    +++ 
Sbjct: 197 LTVTQKNAPTIFCPPIG------HVQKGGDYRESWQPYCITEEALKQAQHMADEVTKSLS 250

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQP---GM 268
             G+   +F       +V + E++ +P   GM
Sbjct: 251 GYGLWGVEFFMTKQ-GEVIFSELSPRPHDTGM 281


>gi|228921229|ref|ZP_04084558.1| Biotin carboxylase [Bacillus thuringiensis serovar huazhongensis
           BGSC 4BD1]
 gi|228838444|gb|EEM83756.1| Biotin carboxylase [Bacillus thuringiensis serovar huazhongensis
           BGSC 4BD1]
          Length = 445

 Score = 75.2 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 80/220 (36%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       +   I +             K+ S+  + +  VPV P I  
Sbjct: 77  AIHPGYGLLSENPSFPVRCKEEGIVFIGPSEEIITKMGSKIESRIAMQAADVPVVPGITT 136

Query: 114 N----RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
           N       ++    I  P ++K   GG  +G+ +++ +Q++         ++ ++    +
Sbjct: 137 NIETAEEAIEIAKQIGYPLMLKASAGGGGIGMQLMETEQTLTKAFESNKTRAQNFFGNGE 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+Y+ D   +   ++ D   +   +   +        K             +     
Sbjct: 197 MYLERYIADAHHIEIQLLADTHGNTVYLWERECSVQRRNQK----VIEEAPSPFLDEGTR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +  +A  A +A+G       +FL D      ++LE+N 
Sbjct: 253 RAMGEVAVQAAKALGYTNAGTVEFLVDDQKN-FYFLEMNT 291


>gi|227543792|ref|ZP_03973841.1| carbamoyl-phosphate synthase (glutamine-hydrolyzing) [Lactobacillus
           reuteri CF48-3A]
 gi|300908860|ref|ZP_07126323.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus reuteri
           SD2112]
 gi|112945585|gb|ABI26395.1| carbamoylphosphate synthase large subunit [Lactobacillus reuteri]
 gi|227186219|gb|EEI66290.1| carbamoyl-phosphate synthase (glutamine-hydrolyzing) [Lactobacillus
           reuteri CF48-3A]
 gi|300894267|gb|EFK87625.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus reuteri
           SD2112]
          Length = 1056

 Score = 75.2 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 49/286 (17%), Positives = 104/286 (36%), Gaps = 33/286 (11%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQIDVD---------------------RSVGLV 45
           G ++E + S   G     AL + G++   ++ +                      S+  +
Sbjct: 21  GQAAEFDYS---GTQACLALREEGYETILVNSNPATIMTDKEIADHVYIEPLTVDSLSRI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +    PD     L G  G +  V      +L+ L I    + + +   + D+ + K++++
Sbjct: 78  IRQEYPDAILPTLGGQIGLNLAVSLSKTGLLDELGIELLGTKLDSIDEAEDREKFKELMN 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G PV  S  VN     ++  H    P +++P       G  +   D  +         
Sbjct: 138 ELGEPVPASQTVNTVDEAVEFAHQCGYPVIVRPAFTMGGTGGGICHNDAEMRTVAKNGLE 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   Q LIE+ + G  E+   VM D++ +V  +   ++  +     ++  +        
Sbjct: 198 LSPVTQCLIEKSIAGYKEIEFEVMRDSADNVMVVCCMEN--FDPVGIHTGDSIVFAPNQT 255

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +    Y+ ++  A    +A+   G        DP S +   +E+N 
Sbjct: 256 LSDREYQMLRDCALKLIRALKIEGGCNVQLALDPQSFQYNVIEVNP 301



 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 32/221 (14%), Positives = 80/221 (36%), Gaps = 13/221 (5%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQHLISPPYVIKPL 133
            +    + +     + D+    +V++   +     +     +  + +   I  P +++P 
Sbjct: 650 GVNILGTTVDDLDAAEDREVFDKVITDLNLKQPIGLTATTHSAVIKAAEKIGYPVLVRPS 709

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
                  +  +   + +   L Q++S      +LI+ Y++G E     + D    +    
Sbjct: 710 YVLGGKAMETVYNQEELQQYLQQNASITADHPILIDAYLEGRECEVDAICDGKDVLIPGI 769

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
           +   +           +S  V P +    DI +++         A+ C GI    F+   
Sbjct: 770 MEHIEHAGVHS----GDSMAVYPPQHFDDDIKQQIVTATEKLAVALKCIGIMNIQFIVH- 824

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            +R+V+ LE+N +   T     P ++   G    ++   ++
Sbjct: 825 -NREVYILEVNPRASRT----VPFLSKITGIEMAQVATRVI 860


>gi|311693893|gb|ADP96766.1| methylcrotonyl-CoA carboxylase, alpha subunit [marine bacterium
           HP15]
          Length = 664

 Score = 75.2 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 80/221 (36%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       E   I +      A A    K  +K ++   GVP+ P    
Sbjct: 77  AIHPGYGFLSENTGFAESCEANNIVFIGPPSSAIAAMGSKSAAKAIMEKAGVPLVPGYHG 136

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKK----DQSIPLDLLQSSSWNHGDQ 165
           +  +++           P ++K + GG   G+ V+      D ++     ++ +      
Sbjct: 137 DDQSVETLRAEAEKCGFPLLLKAVAGGGGKGMRVVNNMGEFDDALAAAKREAQNAFGNPD 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           +LIE+Y+     +   V  D       +A          ++          PA  +  + 
Sbjct: 197 MLIERYLTQPRHVEIQVFCDQDGKGVYLAE-----RDCSVQRRHQKVLEEAPAPGLSEET 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            K +   A  A QAI   G    +FL+D +    F++E+N 
Sbjct: 252 RKAMGEAAVRAAQAINYVGAGTVEFLYD-VDGSFFFMEMNT 291


>gi|225851041|ref|YP_002731275.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Persephonella
           marina EX-H1]
 gi|225645267|gb|ACO03453.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Persephonella
           marina EX-H1]
          Length = 455

 Score = 75.2 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 82/220 (37%), Gaps = 14/220 (6%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS- 110
           D  +   +G   E+    +I E   I +         L+ DK  +++     GVP+ P  
Sbjct: 83  DAVYPG-YGFLAENPHFASICEKSNIKFIGPKSETIRLTGDKAAARKAAEEAGVPIIPGS 141

Query: 111 --ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS----IPLDLLQSSSWNHGD 164
             +   +  ++    I  P +IK   GG   G+ V+  +Q     +P+   ++ +     
Sbjct: 142 PPVENLKDALEIASDIGYPVLIKAAAGGGGRGMRVVHNEQELTRLLPVAQREAEANFGDP 201

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           ++ IE+++     +   ++ D   +V  +   +        K             I   +
Sbjct: 202 RVYIEKFIKNPKHIEIQILADEYGNVIYLGDRECSIQRRHQK----LIEESPSPFINDKV 257

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            KE+   A    + +G  G    +F+ D      +++E+N
Sbjct: 258 RKEMGEAAVRFAKHVGFTGAGTVEFIVDE-DMNFYFIEMN 296


>gi|91786998|ref|YP_547950.1| acetyl-CoA carboxylase, biotin carboxylase [Polaromonas sp. JS666]
 gi|91696223|gb|ABE43052.1| acetyl-CoA carboxylase, biotin carboxylase [Polaromonas sp. JS666]
          Length = 449

 Score = 75.2 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 35/226 (15%), Positives = 84/226 (37%), Gaps = 29/226 (12%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+      +E     +      +  +  DK+ +KQ +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAERVEKSGFKFIGPTPESIRIMGDKVSAKQTMIKAGVPCVPGSEG 136

Query: 111 ------ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSW 160
                 +++ R        +  P +IK   GG   G+ V+  + ++   +     ++ + 
Sbjct: 137 ALPDDPVVIKR----IAKQVGYPVIIKAAGGGGGRGMRVVHTEAALLHAVQTTKAEAGAA 192

Query: 161 NHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK- 218
               ++ +E+++ +   +   ++ D   +   +            K          PA  
Sbjct: 193 FGNPEVYMEKFLQNPRHVEIQILADQHRNAVWLGERDCSMQRRHQK-----VIEEAPAPG 247

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           IP  + +++      A + I  RG    +FL+   + + +++E+N 
Sbjct: 248 IPRKLIEKIGERCVAAVKKINYRGAGTFEFLY--ENGEFYFIEMNT 291


>gi|295398876|ref|ZP_06808860.1| acetyl-CoA carboxylase subunit A [Aerococcus viridans ATCC 11563]
 gi|294972886|gb|EFG48729.1| acetyl-CoA carboxylase subunit A [Aerococcus viridans ATCC 11563]
          Length = 451

 Score = 75.2 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 33/221 (14%), Positives = 77/221 (34%), Gaps = 18/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+       E     +         L  +K +++  V   G+P+ P    
Sbjct: 76  AIHPGYGFLAENETFVQRCEEEGFKFIGPSGKLIGLMGNKAKARDTVGKNGLPIIPGSEG 135

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS----IPLDLLQSSSWNHGDQ 165
            I      +     I  P V+K + GG   G+ +I+ ++           ++ S  +  +
Sbjct: 136 PIRDANEGLIIAKEIGYPVVVKAVSGGGGKGMRLIESEKEFKRLFHEARKEAMSSFNDSR 195

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+++ D   +   ++GD       +        ++  K          PA I  D  
Sbjct: 196 VYLERFITDARHIEVQILGDGKGQAVHLFERDCSIQNHNQK-----IIEEAPAVILDDST 250

Query: 225 KE-VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +  +  L       +        ++L+    +  +++E+N 
Sbjct: 251 RTYITELTAKVMANLHYESAGTVEYLYVEKEKAFYFMEMNT 291


>gi|149185739|ref|ZP_01864055.1| acetyl/propionyl-CoA carboxylase, alpha subunit [Erythrobacter sp.
           SD-21]
 gi|148830959|gb|EDL49394.1| acetyl/propionyl-CoA carboxylase, alpha subunit [Erythrobacter sp.
           SD-21]
          Length = 638

 Score = 75.2 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 88/226 (38%), Gaps = 24/226 (10%)

Query: 57  VLHGNFG---ED-GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            +H  +G   E+ G  QA+++   + +      +      K  +K+++   GVPV P   
Sbjct: 77  AIHPGYGFLSENAGFAQAVID-AGLIWVGPKPSSIDAMGLKDAAKKLMREAGVPVTPGYE 135

Query: 113 VNRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGD 164
               +++        I  P +IK + GG   G+  + K +     L     ++ +    D
Sbjct: 136 GEDQSIERLKSEADAIGYPVLIKAVAGGGGKGMRKVDKAEDFEAALESCRREAKASFSND 195

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
           ++L+E+++     +   V GDA  +V              L+          PA  +   
Sbjct: 196 EVLLEKWITSPRHIEVQVFGDAHGNVV-----HLFERDCSLQRRHQKVIEEAPAPGMDEA 250

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR----KVFWLEINV 264
             +E+   A  A +A+   G    +F+ D        ++F++E+N 
Sbjct: 251 TREEICAAAVRAAKAVDYEGAGTIEFIADASEGLRADRIFFMEMNT 296


>gi|20095102|ref|NP_614949.1| carbamoylphosphate synthase large subunit [Methanopyrus kandleri
           AV19]
 gi|22095503|sp|Q8TUT7|CARB2_METKA RecName: Full=Carbamoyl-phosphate synthase large chain, C-terminal
           section; AltName: Full=Carbamoyl-phosphate synthetase
           ammonia chain
 gi|19888393|gb|AAM02879.1| Carbamoylphosphate synthase large subunit [Methanopyrus kandleri
           AV19]
          Length = 542

 Score = 75.2 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 33/216 (15%), Positives = 85/216 (39%), Gaps = 9/216 (4%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPL 133
            +    +         D+ R  +++   G+P   S   N     ++    I  P +++P 
Sbjct: 101 GVRVLGTDPDDVDRLEDRDRFSKLLKKLGIPQPESGTANDPEEAVEVAEDIGYPVLVRPS 160

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
                  + ++  ++ +   + +++  +    +LI+++++G  + C + G    +   + 
Sbjct: 161 YVIGGRAMEIVYDEEDLRRYIEEAAKVSPEHPILIDRFIEG-GIECEIDGARD-EAGNVL 218

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
           +P    +  E    S +S  V+P + +P    + V   A    +     G+    F++DP
Sbjct: 219 IPGIMEHIEEAGVHSGDSACVVPPQTLPEHAQETVLEYAEDIAEGANVIGLINIQFVYDP 278

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
              +V+ +E N +   T     P ++   G    ++
Sbjct: 279 EEDEVYVIEANPRASRT----VPFISKAVGIPLAKI 310


>gi|332662183|ref|YP_004444971.1| Pyruvate carboxylase [Haliscomenobacter hydrossis DSM 1100]
 gi|332330997|gb|AEE48098.1| Pyruvate carboxylase [Haliscomenobacter hydrossis DSM 1100]
          Length = 512

 Score = 75.2 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 38/219 (17%), Positives = 83/219 (37%), Gaps = 17/219 (7%)

Query: 58  LHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
           +H  +G   E+      +    + +      A  +   K+ +K+ V +  +P+ P +  +
Sbjct: 100 IHPGYGFLSENASFAQAVTDAGMIFIGPTPQAIEVMGSKLAAKETVKAYNIPMVPGVDHS 159

Query: 115 RFTMDSQHLI----SPPYVIKPLKGGSSLGIIVIKKDQSIPL----DLLQSSSWNHGDQL 166
              ++    I      P +IK   GG   G+ V++ ++ +       + +++S      +
Sbjct: 160 ISDVEEAKTIAQTVGYPILIKASAGGGGKGMRVVENEEELAEQMTRAISEATSAFGDGSV 219

Query: 167 LIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
            IE+YV +   +   V+ DA  +V  +   +        K           A +  +I K
Sbjct: 220 FIEKYVTEPRHIEIQVLADAHGNVVHLFERECSIQRRHQK----VVEEAPSAVLTPEIRK 275

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +   A    ++    G    +FL D      ++LE+N 
Sbjct: 276 AMGEAAVNVARSCQYLGAGTVEFLVDA-GLNFYFLEMNT 313


>gi|325925876|ref|ZP_08187245.1| acetyl/propionyl-CoA carboxylase, alpha subunit [Xanthomonas
           perforans 91-118]
 gi|325543707|gb|EGD15121.1| acetyl/propionyl-CoA carboxylase, alpha subunit [Xanthomonas
           perforans 91-118]
          Length = 675

 Score = 75.2 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 74/221 (33%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H  +G   E+           I +      A     DK  +K ++   GVP+ P    
Sbjct: 90  AIHPGYGFLSENAAFAEACAHAGIVFIGPPAAAIRAMGDKSAAKALMQRAGVPLTPGYHG 149

Query: 113 ---VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
                 F       I  P +IK   GG   G+  +    +    L     ++ S      
Sbjct: 150 DEQAPAFLRAQADAIGYPVLIKASAGGGGKGMRRVDTSAAFEDALASCQREAQSAFGNAH 209

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           +L+E+YV     +   V GD   +V  +           ++          PA  +    
Sbjct: 210 VLVEKYVQRPRHIEIQVFGDTHGEVVYL-----FERDCSVQRRHQKVLEEAPAPGMSEAR 264

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              + + A  A QA+G  G    +F+  P     +++E+N 
Sbjct: 265 RAAMGKAAVDAAQAVGYVGAGTVEFIAGP-DGDFYFMEMNT 304


>gi|283956710|ref|ZP_06374188.1| hypothetical protein C1336_000270010 [Campylobacter jejuni subsp.
           jejuni 1336]
 gi|283791787|gb|EFC30578.1| hypothetical protein C1336_000270010 [Campylobacter jejuni subsp.
           jejuni 1336]
          Length = 383

 Score = 75.2 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/188 (15%), Positives = 73/188 (38%), Gaps = 14/188 (7%)

Query: 81  HSGILASA-LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSL 139
            +     A  + DK   K+V     +      ++ +   D + + + P V+KP    +  
Sbjct: 91  GTNSYECAKNTTDKSLMKKVFERNNINHAKYFIL-KDEKDLEQIANFPVVVKPSDRSAGR 149

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM----GDASLDVTEIAVP 195
           G++ +   +++     ++  +++   +L E+ + G + +   +        + +TE  + 
Sbjct: 150 GVVKVFDKENLKKYFYKAKDFSYNKIVLAEEVLKGRQFSVETISSHGKHQIIAITEEYLR 209

Query: 196 KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR-GISRSDFLFDPLS 254
           + +F +       L + H++PA+I     K +Q        A     G S  +      +
Sbjct: 210 EGEFAN-----DFLETQHLIPARITHHEKKIIQNEIIKVLNAFKINFGASHIEIKLH--N 262

Query: 255 RKVFWLEI 262
             V  +EI
Sbjct: 263 NIVKIIEI 270


>gi|260906788|ref|ZP_05915110.1| pyruvate carboxylase [Brevibacterium linens BL2]
          Length = 1133

 Score = 75.2 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 37/251 (14%), Positives = 81/251 (32%), Gaps = 24/251 (9%)

Query: 29  AGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
            G  V        +  V      D  +   +G   E+  +        I +         
Sbjct: 54  EGHPVRAYLSVEEMLRVAKESGADAIYPG-YGFLSENPDLARACHEAGITFIGPKADVLE 112

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI------SPPYVIKPLKGGSSLGII 142
           L+ +K+++     + G+PV  S    R + D   L+        P  +K + GG   G+ 
Sbjct: 113 LAGNKVQALTAARNAGIPVLDS---TRPSADIAQLLADAESMEYPLFVKAVAGGGGRGMR 169

Query: 143 VIKK----DQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKS 197
            + +    + ++   + ++        + IEQ V     +   V+ D   +         
Sbjct: 170 RVGEASQLEDALKAAMREAEGAFGDPTVFIEQAVQRPRHIEVQVLADNDSNAI-----HL 224

Query: 198 DFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS-- 254
                 ++        + PA  +   I   +   A    +A+G +     +FL +     
Sbjct: 225 FERDCSVQRRHQKVVELAPAPNLDPAIADALHADALKFAKALGYQNAGTVEFLLETDGPR 284

Query: 255 -RKVFWLEINV 264
             +  ++E+N 
Sbjct: 285 KGQHVFIEMNP 295


>gi|30250344|ref|NP_842414.1| biotin / lipoyl attachment:carbamoyl-phosphate synthase:DUF183
           [Nitrosomonas europaea ATCC 19718]
 gi|30181139|emb|CAD86332.1| Biotin / Lipoyl attachment:Carbamoyl-phosphate synthase:DUF183
           [Nitrosomonas europaea ATCC 19718]
          Length = 1211

 Score = 75.2 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 71/220 (32%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+           I +             K  ++ +      P+ P   +
Sbjct: 77  AIHPGYGFLSENASFAEQCAAEGICFLGPTPEQIRTFGLKHTARALAQQLDAPMLPGTGL 136

Query: 114 NRFTM---DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQL 166
                   +  H I  P ++K   GG  +G+ + +  Q +          + S      L
Sbjct: 137 LEHLETACEEAHRIGYPVMLKSTAGGGGIGMRLCRNRQELIDAYESVKNLAQSNFSNAGL 196

Query: 167 LIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIY 224
            +E+Y+D    +   + GD    V  +            K          PA  +     
Sbjct: 197 FLEKYIDQARHIEVQIFGDGRGKVIALEERDCSMQRRNQK-----VIEETPAPGLSPATR 251

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +Q  A    +++  R     ++++DP   + ++LE+N 
Sbjct: 252 NALQETAIRLGESVQYRSAGTVEYVYDPSVDRFYFLEVNT 291


>gi|11497836|ref|NP_069058.1| pyruvate carboxylase subunit A [Archaeoglobus fulgidus DSM 4304]
 gi|6685811|sp|O30019|PYCA_ARCFU RecName: Full=Pyruvate carboxylase subunit A; AltName: Full=Pyruvic
           carboxylase A
 gi|2650421|gb|AAB91012.1| biotin carboxylase (acc) [Archaeoglobus fulgidus DSM 4304]
          Length = 506

 Score = 75.2 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 40/218 (18%), Positives = 81/218 (37%), Gaps = 17/218 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+       E   I +         ++  K+RS++ +   GVPV P    
Sbjct: 77  AIHPGYGFLAENAEFAERCEEEGIVFIGPSPEVIRIAGSKVRSRESMQRAGVPVIPGSPK 136

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS----SSWNHGDQL 166
           I       +    I  P  +K   GG  +GI+V+   + +     +S     S+     +
Sbjct: 137 IDTVDEAKEWAEKIGYPVAVKASGGGGGIGIVVVNSQEELEEAFRKSKKLGESYFKDSTV 196

Query: 167 LIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
            +E+Y+     +   ++ D   +V  +   +        K             +  ++ +
Sbjct: 197 YLEKYLARPRHIEVQILADQHGNVIHLGERECSIQRRHQK----LIEEAPSPALNEEMRE 252

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
           E+ +LA    + IG       +FL+   +   ++LEIN
Sbjct: 253 ELGKLAVKGAREIGYTNAGTFEFLY--ENGNFYFLEIN 288


>gi|226312279|ref|YP_002772173.1| biotin carboxylase [Brevibacillus brevis NBRC 100599]
 gi|226095227|dbj|BAH43669.1| probable biotin carboxylase [Brevibacillus brevis NBRC 100599]
          Length = 448

 Score = 75.2 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 81/221 (36%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+     + +   I +      A     DK  +K  +S   VP+ P    
Sbjct: 77  AIHPGYGFLAENASFAQLCQDCSITFIGPDPEAITKMGDKSVAKATMSQANVPLVPGTDG 136

Query: 112 LVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS-----SSWNHGD 164
           L++     +     I  P ++K   GG   G+ V      +   + Q+     +++ +  
Sbjct: 137 LIDDIDEALQVAKKIGYPVIVKATAGGGGRGMRVAFDADELSKAIRQAQKEAETAFGNAG 196

Query: 165 QLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            + +E+YV+    +   +MGD   +   +            K             +   +
Sbjct: 197 -VYLEKYVEEPRHVEIQIMGDKHGNAVYLGERDCSIQRRHQK----LVEEAPSPALDQTL 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +++ + A  A +A+   G    +FL D    + +++E+N 
Sbjct: 252 REQMGQAAVAAAKAVSYHGAGTVEFLLDKH-GQFYFMEMNT 291


>gi|196231463|ref|ZP_03130321.1| pyruvate carboxylase [Chthoniobacter flavus Ellin428]
 gi|196224316|gb|EDY18828.1| pyruvate carboxylase [Chthoniobacter flavus Ellin428]
          Length = 1155

 Score = 75.2 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 76/221 (34%), Gaps = 18/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
           ++H  +G   E+           I +         L  DK+ ++ +     VP  P    
Sbjct: 91  LIHPGYGFLSENAKFARACRDAGIEFVGPKAELLELMGDKVAARALTQKLKVPTLPGTED 150

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK----DQSIPLDLLQSSSWNHGDQ 165
            +      +     I  P +IK   GG   G+ V+ K    D  +     ++        
Sbjct: 151 PVSDRGEALKIAAHIGFPLIIKAAFGGGGRGMRVVHKAGDLDALLDEAQGEAERAFGNPA 210

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDI 223
           + +E+Y+     +   V+GD   +V              ++        + P  ++   +
Sbjct: 211 VFLEKYIPRAKHIEVQVLGDRHGNVV-----HLHERDCSVQRRHQKVVEIAPSIELDDRV 265

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             E+   A    + IG       +FL+D  ++  F++E+N 
Sbjct: 266 RHELCDAAARIAKEIGYDNAGTIEFLYDLDTKDWFFIEMNP 306


>gi|83591392|ref|YP_425144.1| biotin carboxylase [Rhodospirillum rubrum ATCC 11170]
 gi|83574306|gb|ABC20857.1| Biotin carboxylase [Rhodospirillum rubrum ATCC 11170]
          Length = 662

 Score = 75.2 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 81/222 (36%), Gaps = 22/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H  +G   E+   Q  L    I +     LA     DK+ SK++ +  GV   P  + 
Sbjct: 77  AVHPGYGFLSENKAFQIALAKEGIAFIGPDALAIQAMGDKIESKKLAAKAGVSTVPGYMG 136

Query: 113 VNRFTMDSQHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPL----DLLQSSSWNHGDQ 165
           V +   ++  +   I  P +IK   GG   G+ V    +           ++ S    D+
Sbjct: 137 VIKDAEEAARIASEIGFPVMIKASAGGGGKGMRVAWSVEEAREGFVSATNEAKSSFGDDR 196

Query: 166 LLIEQYVD-GIELTCGVMGDAS--LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD 222
           + IE++++    +   ++ D    L V E             + +           +  +
Sbjct: 197 VFIEKFIEQPRHIEIQILADGETYLYVNERECS-------IQRRNQKVVEEAPSPFLTPE 249

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + K +   A    + +  +     +F+ D   R  ++LE+N 
Sbjct: 250 VRKAMGEQAVALAKVVDYKSAGTIEFIVDAA-RNFYFLEMNT 290


>gi|295706382|ref|YP_003599457.1| biotin carboxylase [Bacillus megaterium DSM 319]
 gi|294804041|gb|ADF41107.1| biotin carboxylase [Bacillus megaterium DSM 319]
          Length = 450

 Score = 75.2 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 33/199 (16%), Positives = 72/199 (36%), Gaps = 16/199 (8%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIK 131
              +        ++  DK+ ++  +   GVPV P     +           LI  P ++K
Sbjct: 98  GFCFIGPSPEIISMMGDKIAARAAMKEAGVPVVPGSEGDVTSVEEACKVASLIGYPVMLK 157

Query: 132 PLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGDQLLIEQYVD-GIELTCGVMGDAS 186
              GG  +G++    ++++         ++ ++   + + IE+ +     +   V GD  
Sbjct: 158 ASGGGGGIGMVRCDNEEAVKQVYASTKARAKAYFGQEGMFIEKLITNAKHIEVQVFGDQH 217

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISR 245
            +V              ++  +       PA  +     + +Q  A  A +AIG      
Sbjct: 218 GNVV-----HLFERDCSVQRRNQKVIEEAPALSLKESTRQAMQNQAVQAAKAIGYYNAGT 272

Query: 246 SDFLFDPLSRKVFWLEINV 264
            +F+ D      ++LE+N 
Sbjct: 273 VEFIVDEDEN-FYFLEMNT 290


>gi|311742211|ref|ZP_07716021.1| acetyl-coA carboxylase carboxyl transferase subunit alpha
           [Aeromicrobium marinum DSM 15272]
 gi|311314704|gb|EFQ84611.1| acetyl-coA carboxylase carboxyl transferase subunit alpha
           [Aeromicrobium marinum DSM 15272]
          Length = 612

 Score = 75.2 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 47/258 (18%), Positives = 90/258 (34%), Gaps = 26/258 (10%)

Query: 18  SGKACASALEDAGFKV-SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLE 76
           S      A  D   +V S +D+D  V   + H   D   N  +G   E       +    
Sbjct: 39  SATFVTEA--DVAVEVDSYLDIDAIVAAAVRH-GADAV-NPGYGFLAERAAFARAVTDAG 94

Query: 77  IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGG 136
           + +             K  ++ +    GVPV P          +    + P ++K   GG
Sbjct: 95  LVFVGPSADVIEALGRKDHARAIAERAGVPVMPH-----HDAGAVPAYAYPVLVKAAAGG 149

Query: 137 SSLGIIVIKKDQSIPLDL-----LQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVT 190
              G+ +++    +P  +       +S++   D LL+E YV+ G  +   V GD     +
Sbjct: 150 GGKGMRIVRSADELPAAIEAAGREAASAFG-DDTLLVEAYVEHGRHVEVQVFGD-----S 203

Query: 191 EIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
              V          +          PA  +  ++ +++   +    + +G  G    +FL
Sbjct: 204 RGQVVHLFDRDCSAQRRHQKVVEEAPAPDLDPELRRQLHESSVALCREVGYVGAGTVEFL 263

Query: 250 FDPLSRKV---FWLEINV 264
             P +      ++LE+N 
Sbjct: 264 VAPAADGTSRAYFLEMNT 281


>gi|255535159|ref|YP_003095530.1| Carbamoyl-phosphate synthase large chain [Flavobacteriaceae
           bacterium 3519-10]
 gi|255341355|gb|ACU07468.1| Carbamoyl-phosphate synthase large chain [Flavobacteriaceae
           bacterium 3519-10]
          Length = 1060

 Score = 75.2 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 51/273 (18%), Positives = 103/273 (37%), Gaps = 31/273 (11%)

Query: 20  KACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58
           +AC S L + G+KV  I         DV+            + V  ++   +PD     L
Sbjct: 31  QACLS-LREEGYKVILINSNPATIMTDVEIADKVYIEPISLQFVSHIIRKERPDALLPTL 89

Query: 59  HGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
            G  G +  V+     IL+  ++    + + A   + D+   ++++     PV  S +VN
Sbjct: 90  GGQTGLNMAVELQNSGILDECKVEVLGTKLSAINQAEDRDLFRELMRELNEPVPDSDIVN 149

Query: 115 --RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
             +  ++    I  P +++P       G  +   D+ +         ++   Q LIE+ +
Sbjct: 150 TVQGALEFAERIGYPVIVRPAFTMGGTGGGIAHNDEELKEIASFGLKYSPVTQCLIEKSI 209

Query: 173 DG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
            G  E+   VM D + +   I V   +       ++  +        +    Y+ ++  +
Sbjct: 210 AGFKEIEYEVMRDKNDNA--IVVCNMENIDPVGVHTGDSIVVAPSQTLSDREYQMLRNSS 267

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
               +A+G  G        DP S   + +E+N 
Sbjct: 268 LKIIRALGIEGGCNVQLALDPHSFDYYIIEVNP 300



 Score = 65.9 bits (160), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 24/214 (11%), Positives = 71/214 (33%), Gaps = 14/214 (6%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC--PSILVNRFTMDSQHLISPPYV 129
           L    +    + +     + ++ + +  +   G+P     +       +   + I  P +
Sbjct: 647 LAAHGVQILGTSLEDLDRAENRNKFEAALQEMGIPQPLGKTCFTKEEALIIANEIGYPVL 706

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           ++P        + ++  D+ +   +  +   +    +LI++Y+ G E+    + D    V
Sbjct: 707 VRPSYVLGGRAMEIVYDDKDLSYYMTNAVKESSEHPILIDRYLTGREVEVDAISDGETVV 766

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               +   +           +S  V P   I     + +        + +   G+    +
Sbjct: 767 IPGIMEHIERAGVHS----GDSIAVYPPQNITPKQIETLVDYTERLAKGLNVIGLMNIQY 822

Query: 249 LFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277
           +       V+ +E+N       P ++ ++  P  
Sbjct: 823 VL--SDGNVYVIEVNPRSSRTVPFLSKITEIPMA 854


>gi|296141001|ref|YP_003648244.1| carbamoyl-phosphate synthase L chain ATP- binding protein
           [Tsukamurella paurometabola DSM 20162]
 gi|296029135|gb|ADG79905.1| Carbamoyl-phosphate synthase L chain ATP- binding protein
           [Tsukamurella paurometabola DSM 20162]
          Length = 655

 Score = 75.2 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 82/221 (37%), Gaps = 17/221 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      L+   I +    + A     DK+ ++  V    VPV P I  
Sbjct: 77  AVHPGYGFLSENAAFARALDAAGIEFLGPPVAAIETMGDKITARAAVVERDVPVVPGISR 136

Query: 112 --LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
             L +   + +   I  P +IKP  GG   G+  ++    +P  +  +          D 
Sbjct: 137 PGLTDADLIAAADDIGFPVLIKPSAGGGGKGMHRVQNPADLPAAVAAARREAAAAFGDDT 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           L +E +VD    +   V+ D   +V  +   +        K           A +     
Sbjct: 197 LFMEHFVDTPRHIEVQVLADKHGNVIHLGERECSLQRRHQK----VIEEAPSALLDAATR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDP-LSRKVFWLEINV 264
           + + R A  A +++G  G+   +F+       + F++E+N 
Sbjct: 253 ERIGRAACDAARSVGYTGVGTVEFIVSAHRPDEFFFMEMNT 293


>gi|110633374|ref|YP_673582.1| carbamoyl-phosphate synthase L chain, ATP-binding [Mesorhizobium
           sp. BNC1]
 gi|110284358|gb|ABG62417.1| biotin carboxyl carrier protein / biotin carboxylase [Chelativorans
           sp. BNC1]
          Length = 670

 Score = 75.2 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 44/262 (16%), Positives = 86/262 (32%), Gaps = 36/262 (13%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+      LE   I +      A     DK+ SK++ +  GV   P    
Sbjct: 77  AVHPGYGFLSENAEFCERLESEGIVFIGPKSKAIRAMGDKITSKKIAAEAGVSTVPGHMG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
            +            I  P +IK   GG   G+ +   D            +++S    ++
Sbjct: 137 LVEDAGHAARIAAEIGYPVMIKASAGGGGKGMRIAWNDAEAREGFERSRSEAASSFGDNR 196

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE++V+    +   V+GD   +   +   +        K             +     
Sbjct: 197 IFIEKFVEEPRHIEIQVLGDGFGNCIHLGERECSIQRRNQK----VVEEAPSPFLDAKTR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY---- 280
            E+   A    +A+  +     +F+ D   R  ++LE+N +              +    
Sbjct: 253 AEMGAQAIALAKAVDYQSAGTVEFIVD-SERNFYFLEMNTR----------LQVEHPVTE 301

Query: 281 --AGYSFRELLLWMVEDASCLR 300
              G    +L+  M+  A+  R
Sbjct: 302 LVTGI---DLVEQMIRIAAGER 320


>gi|282850076|ref|ZP_06259458.1| carbamoyl-phosphate synthase, large subunit [Veillonella parvula
           ATCC 17745]
 gi|282580265|gb|EFB85666.1| carbamoyl-phosphate synthase, large subunit [Veillonella parvula
           ATCC 17745]
          Length = 1066

 Score = 75.2 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 39/262 (14%), Positives = 100/262 (38%), Gaps = 28/262 (10%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH-----GNFGEDG---- 66
           AL  AG++   I         D D S  L    L  D    ++      G   + G    
Sbjct: 578 ALRKAGYQSIMINNNPETVSTDFDISDSLYFEPLTVDDVMEIIDKEQPVGVIAQFGGQTA 637

Query: 67  -LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTMDSQHL 123
             +   L    +    + + +  ++ D+ R  ++++  G+P     LV  +    ++   
Sbjct: 638 ISLAGPLAKRGVKILGTSVDSIDMAEDRERFDELLAKLGIPRPVGALVTSDEEAQEAAKK 697

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           +  P +++P        + ++  D+ + + + ++   +    +LI++Y+ G+E+    + 
Sbjct: 698 LKYPLIVRPSYVLGGRAMEIVYNDKELDVYMKEAVVASKEHPVLIDRYMVGMEVEVDAIS 757

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRG 242
           D     T++ +P            S +S  V PA+ +  ++  ++          +  +G
Sbjct: 758 DG----TDVCIPGIMEQIERAGVHSGDSMAVYPAQHLSQELIDQIVDYTRRIAVGLNVKG 813

Query: 243 ISRSDFLFDPLSRKVFWLEINV 264
           +    ++      ++  +E+N 
Sbjct: 814 VLNIQYIV--ADGELNVIEVNP 833



 Score = 60.5 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 48/286 (16%), Positives = 99/286 (34%), Gaps = 33/286 (11%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI---------DVD------------RSVGLV 45
           G ++E + +   G     +L + G+KV  +         D D              V  V
Sbjct: 19  GQAAEFDYA---GTQACRSLREEGYKVVLVNSNPATIMTDTDIADRVYVEPISLEFVTEV 75

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   +P      L G  G +  VQ     +LE   +    + + A   + D+   K+ + 
Sbjct: 76  IKKERPWGLLATLGGQVGLNMAVQLSEAGVLEEYGVKLLGTTLEAIKQAEDRELFKEAMK 135

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
               PV  S + N     +   + I  P +I+P       G  +   +  +     +   
Sbjct: 136 EINQPVPESDIFNDLEEAVTFANRIGYPIIIRPAYTLGGTGGGIAHNEDEMYEITRRGLK 195

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   Q+L E+ V G  E+   VM D++ +   I V   +       ++  +        
Sbjct: 196 LSPIHQILAERSVAGWKEIEYEVMRDSADN--CIIVCNMENIDPVGVHTGDSIVVAPSQT 253

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +    Y+ ++  +    + +   G     +  +P S +   +E+N 
Sbjct: 254 LNDIQYQMLRTASVEIIRYLKIEGGCNVQYALNPNSNEYIVIEVNP 299


>gi|226310125|ref|YP_002770019.1| phosphoribosylaminoimidazole carboxylase ATPase subunit
           [Brevibacillus brevis NBRC 100599]
 gi|226093073|dbj|BAH41515.1| phosphoribosylaminoimidazole carboxylase ATPase subunit
           [Brevibacillus brevis NBRC 100599]
          Length = 387

 Score = 75.2 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 40/205 (19%), Positives = 84/205 (40%), Gaps = 13/205 (6%)

Query: 65  DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQH 122
           D  V  +LE     Y   G     ++ +++R K  +   G+PV P  +VN      D+  
Sbjct: 85  DAQVAEVLESR--AYVPQGSRLLRITQNRIREKTAIREIGIPVAPFCVVNSLEDLQDAVR 142

Query: 123 LISPPYVIKPLKGG-SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
            +  P V+K   GG    G  V++ +  +       S    G +L++EQ+V   ++   V
Sbjct: 143 ELGLPAVMKTATGGYDGKGQWVLRSEAELAEAYETLSKA--GAELIVEQFVP-FQMELSV 199

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241
           +   +    E+AV       ++     L+   ++PA+I  ++    + +A    + +   
Sbjct: 200 VAARN-PAGELAVFPVSENIHQENILHLS---IVPARISAEVAARAEEIARTIVEKLDVV 255

Query: 242 GISRSDFLFDPLSRKVFWLEINVQP 266
           G+   +        +++  E+  +P
Sbjct: 256 GLIAVELFLTE-DGQLYVNELAPRP 279


>gi|85118469|ref|XP_965450.1| carbamoyl-phosphate synthase arginine-specific large chain
           [Neurospora crassa OR74A]
 gi|28927259|gb|EAA36214.1| carbamoyl-phosphate synthase arginine-specific large chain
           [Neurospora crassa OR74A]
 gi|38567193|emb|CAE76486.1| probable carbamoyl-phosphate synthase (glutamine-hydrolyzing)
           arginine-specific large chain [Neurospora crassa]
          Length = 1168

 Score = 75.2 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 55/289 (19%), Positives = 106/289 (36%), Gaps = 37/289 (12%)

Query: 4   LMGGISSEREVSLSSGKACASALEDAGF--------------------KVSQIDVDRS-V 42
           L  G + E + S   G     AL++AG                     +V  + V    V
Sbjct: 102 LAIGQAGEFDYS---GSQALKALKEAGVASVLINPNIATIQTNHSLADEVYYLPVTPEYV 158

Query: 43  GLVLAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQ 98
             V+   KPD  F    G    +  VQ     + E   +    + +    LS D+    +
Sbjct: 159 EYVIQREKPDGIFLSFGGQTALNLGVQMQKLGLFEKYGVKVLGTSVRTLELSEDRDLFAK 218

Query: 99  VVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
            +    +P+  S  VN     +D+ + I  P +++       LG      ++ +    + 
Sbjct: 219 ALEEINIPIAKSFAVNTVDEALDAANKIGYPIIVRAAYALGGLGSGFANNEEELR--NMA 276

Query: 157 SSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215
           + S     Q+L+E+ + G  E+   V+ DA+ +   I V   + +   L   + +S  V 
Sbjct: 277 ARSLTLSPQILVEKSLKGWKEVEYEVVRDANNN--CITVCNMENFD-PLGIHTGDSIVVA 333

Query: 216 PAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
           P++ +  + Y  ++  A    + +G  G     +   P       +E+N
Sbjct: 334 PSQTLSDEEYHMLRSAAIKIVRHLGVVGECNVQYALQPDGLDYRVIEVN 382



 Score = 53.6 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/163 (12%), Positives = 59/163 (36%), Gaps = 12/163 (7%)

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSS 138
            +       + D+ +  +++ S GV       +            +  P +++P    S 
Sbjct: 738 GTDPRDIDRAEDRQKFSEILDSIGVDQPAWKELTSVEEAEKFAEEVGYPVLVRPSYVLSG 797

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL----TCGVMGDASLDVTEIAV 194
             + VI+  + +   L  +++ +    ++I ++++G +          G+  L      V
Sbjct: 798 AAMTVIRSKEDLKDKLEAAANVSPEHPVVITKFIEGAQEIDVDGVASEGNLILHAVSEHV 857

Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
            ++  +S +       +  + PA +       V+ +A    +A
Sbjct: 858 EQAGVHSGDA------TLVLPPANLDQTTMDRVKEIAQKVAKA 894


>gi|332800374|ref|YP_004461873.1| carbamoyl-phosphate synthase, large subunit [Tepidanaerobacter sp.
           Re1]
 gi|332698109|gb|AEE92566.1| carbamoyl-phosphate synthase, large subunit [Tepidanaerobacter sp.
           Re1]
          Length = 1063

 Score = 75.2 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/217 (14%), Positives = 82/217 (37%), Gaps = 14/217 (6%)

Query: 68  VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLIS 125
           + A LE   +    + + +  L+ D+ +   ++S  G+P   +         +     I 
Sbjct: 642 LAATLESYGVRILGTDVKSIDLAEDREKFDDLLSELGIPRPKATAARSVEEALAKAGEIG 701

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            P +++P        + ++   + +   +  +   +    +LI++Y+ G E+    + D 
Sbjct: 702 FPMLVRPSYVLGGRAMEIVYNMKELKNYMENAVEASSEKPVLIDRYIGGTEVEVDAVCDG 761

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGIS 244
                E+ +P    +       S +S  V P + +     +++          +  +G+ 
Sbjct: 762 K----EVLIPGIMEHIERAGIHSGDSIAVYPHQTLSPTAVEKIVDYTTRIALRLSVKGLI 817

Query: 245 RSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPE 276
              F+    + KV+ +E+N       P M+ ++  P 
Sbjct: 818 NIQFVV--ENDKVYIIEVNPRSSRTVPYMSKITQIPM 852



 Score = 65.1 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 32/199 (16%), Positives = 76/199 (38%), Gaps = 7/199 (3%)

Query: 70  AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPP 127
            IL+   +    + + +   + D+   K+++   G PV  S +V+      +       P
Sbjct: 106 GILDREGVKLLGTPLTSIKKAEDRELFKKLMEDIGEPVPDSRIVHSLEEARNFAKEAGLP 165

Query: 128 YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDAS 186
            +++P       G  V   ++ +          +   Q+L+E+ + G  E+   V+ D  
Sbjct: 166 LIVRPAYTLGGTGGGVANTEEELMEITYNGLRLSRIHQVLLEKSLLGMKEIEFEVIRDGK 225

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISR 245
                I     +     +   + +S  V P++ +    Y +++  +F   +A+G  G   
Sbjct: 226 DQCICIC--DMENID-PVGIHTGDSVVVAPSQTLTDAEYNKLKAASFKIIRALGIEGGCN 282

Query: 246 SDFLFDPLSRKVFWLEINV 264
             +  D  +   + +E+N 
Sbjct: 283 VQYALDSTTGNYYVIEVNP 301


>gi|209544198|ref|YP_002276427.1| acetyl-CoA carboxylase biotin carboxylase subunit
           [Gluconacetobacter diazotrophicus PAl 5]
 gi|209531875|gb|ACI51812.1| acetyl-CoA carboxylase, biotin carboxylase [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 447

 Score = 75.2 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 76/220 (34%), Gaps = 18/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+      +E   + +         +  DK+ +K  + + GVP+ P    
Sbjct: 77  AIHPGYGFLSENADFAETVEAHGLAFIGPTGHHIRIMGDKITAKTTMRALGVPLVPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
            +            +  P +IK   GG   G+ V +    I         ++ +    D+
Sbjct: 137 ALASLDEARAVAAQVGYPVLIKATAGGGGRGMKVARTPDEIEEAWSVARTEARAAFGNDE 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+Y+D    +   ++ D   +V               K          PA +  +  
Sbjct: 197 VYLEKYMDRPRHIELQILADTHGNVVHFGERDCSLQRRHQKLLEEAG---SPA-LTAEQR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +  +A  A   +G R     +FL+     +  ++E+N 
Sbjct: 253 DGIGAIATAALSKLGYRNAGTLEFLY--QDGQFCFIEMNT 290


>gi|297583970|ref|YP_003699750.1| carbamoyl-phosphate synthase large subunit [Bacillus
           selenitireducens MLS10]
 gi|297142427|gb|ADH99184.1| carbamoyl-phosphate synthase, large subunit [Bacillus
           selenitireducens MLS10]
          Length = 1071

 Score = 75.2 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 48/314 (15%), Positives = 114/314 (36%), Gaps = 37/314 (11%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQIDVDRS---------------------VGLV 45
           G ++E + +   G     AL++ G++V  ++ + +                     +  +
Sbjct: 21  GQAAEFDYA---GTQACQALKEEGYEVVLVNSNPATIMTDEETADRVYMEPLTVDFLSRI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   +PD     L G  G +  V+     IL+   +    + + +   + D+   + +++
Sbjct: 78  IRKERPDALLGTLGGQTGLNLAVELFESGILDEYGVKLLGTEVESIRKAEDREAFRALMN 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G PV  S +V+           I  P +++P       G  ++   + +   +     
Sbjct: 138 ELGEPVPESEIVHSVEEARTFAESIGLPLIVRPAYTLGGTGGGIVNTMEELETIVYGGLK 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +  +Q L+E+ + G  E+   VM D +     I     +       ++  +        
Sbjct: 198 ASPVNQCLVEKSIAGFKEIEYEVMRDKNDTAIVIC--NMENIDPVGVHTGDSIVMAPSQT 255

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278
           +    Y+ ++  +    +A+   G        DP S + + +E+N  P ++  S     +
Sbjct: 256 LTDRDYQRLRNASLAIIRALEIEGGCNVQLAIDPDSDQYYIIEVN--PRVSRSS--ALAS 311

Query: 279 AYAGYSFRELLLWM 292
             AGY   +L   +
Sbjct: 312 KAAGYPIAKLSAKI 325



 Score = 61.7 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 37/265 (13%), Positives = 90/265 (33%), Gaps = 32/265 (12%)

Query: 24  SALEDAGFKVSQID---------------------VDRSVGLVLAHLKPDLAFNVLHGNF 62
            A+ +AG++   I+                         V  V+ H KP+       G  
Sbjct: 578 KAIREAGYEAIVINNNPETVSTDFEVSDKLYFEPLTTEDVMHVIEHEKPEGVLVQFGGQT 637

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--FTMDS 120
             +  +   L    +    + +       ++   +  +   G+P+            M  
Sbjct: 638 AIN--LADSLVKQGVRILGTSLEEMDACENRNLFEARLHDIGLPMPEGKTAVSVPEAMAI 695

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +++P        + ++  +  +   + ++ + N    +LI++Y+ G E+   
Sbjct: 696 AEDIGYPVLVRPSYVLGGRAMEIVHTESELSHYMQRAVNVNKKHPVLIDEYITGTEIEVD 755

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIG 239
           V+ D    V    VP    +       S +S  V P + +  ++ + + + A    +   
Sbjct: 756 VVSDGETAV----VPGIMEHIERAGVHSGDSIAVYPPQKLSDEMKETITQSAIRLAKGFQ 811

Query: 240 CRGISRSDFLFDPLSRKVFWLEINV 264
            +G+    F+      ++  +E+N 
Sbjct: 812 IKGLMNIQFVIQR--DRLLVIEVNP 834


>gi|74215392|dbj|BAE41902.1| unnamed protein product [Mus musculus]
          Length = 1179

 Score = 75.2 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 31/233 (13%), Positives = 76/233 (32%), Gaps = 17/233 (7%)

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
            +  V      D      +G   E        +   + +            DK+ ++ + 
Sbjct: 102 DIIKVAKENGVDAVHPG-YGFLSERADFAQACQDAGVRFIGPSPEVVRKMGDKVEARAIA 160

Query: 101 SSCGVPVCPSILVNRFTMDSQHLI----SPPYVIKPLKGGSSLGIIVIKKDQSIPL---- 152
            + GVPV P       ++   H        P + K   GG   G+ V+   + +      
Sbjct: 161 IAAGVPVVPGTDSPISSLHEAHEFSNTYGFPIIFKAAYGGGGRGMRVVHSYEELEENYTR 220

Query: 153 DLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
              ++ +      L +E++++    +   ++GD   ++  +            K      
Sbjct: 221 AYSEALAAFGNGALFVEKFIEKPRHIEVQILGDQYGNILHLYERDCSIQRRHQK-----V 275

Query: 212 THVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
             + PA  +   +   +   +    + +G +     +FL D   +  +++E+N
Sbjct: 276 VEIAPATHLDPQLRSRLTSDSVKLAKQVGYKNAGTVEFLVDKHGKH-YFIEVN 327


>gi|302187832|ref|ZP_07264505.1| acetyl-CoA carboxylase subunit A [Pseudomonas syringae pv. syringae
           642]
          Length = 471

 Score = 75.2 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 77/221 (34%), Gaps = 20/221 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            LH  +G   E+  +  I     I +            DK  +++ +   GVPV P    
Sbjct: 76  ALHPGYGFLSENAELADICAERGIKFIGPSAEVIRRMGDKTEARRSMIKAGVPVTPGTEG 135

Query: 114 NRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGD 164
           N   +D        I  P ++K   GG   GI      + +           + ++   +
Sbjct: 136 NVADIDEALIEGERIGYPVMLKATSGGGGRGIRRCNSREELEQAFPRVISEATKAFGSAE 195

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDI 223
             L +  V+   +   ++GD+  +V  +            K        + P  ++  + 
Sbjct: 196 VFLEKCIVNPKHIEAQILGDSFGNVVHLFERDCSIQRRNQKL-----IEIAPSPQLTPEQ 250

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              +  L+  A +A+G       +FL      +V+++E+N 
Sbjct: 251 RAYIGDLSVRAAKAVGYENAGTVEFLL--AEGEVYFMEMNT 289


>gi|269836967|ref|YP_003319195.1| carbamoyl-phosphate synthase, large subunit [Sphaerobacter
           thermophilus DSM 20745]
 gi|269786230|gb|ACZ38373.1| carbamoyl-phosphate synthase, large subunit [Sphaerobacter
           thermophilus DSM 20745]
          Length = 1080

 Score = 75.2 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 50/272 (18%), Positives = 98/272 (36%), Gaps = 30/272 (11%)

Query: 37  DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAI-----------------LELLEIPY 79
           D D S  L    L  +  F VL    G DG    +                 L    +P 
Sbjct: 602 DFDTSDRLYFEPLDEESVFEVLRHESGSDGRAPDVPVILQFGGQTAINLSEPLAARGVPI 661

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGS 137
             S   A  ++ D+ R ++ +++ G+P  P   V      ++    I  P +++P     
Sbjct: 662 LGSAREAIDIAEDRKRFERFLANLGIPQPPGDAVTSLEAAIEVAERIGYPVLVRPSYVLG 721

Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKS 197
              + V+   + +   L  S +++ G  +LI++Y+ G E+    + D      E+ +P  
Sbjct: 722 GRAMEVVHSREYLARYLETSVTFDTGHPVLIDKYLQGKEVEVDAICDGK----EVLIPGI 777

Query: 198 DFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256
             +       S +S  V P   +      ++         A+G  G+    ++      +
Sbjct: 778 MEHIERAGVHSGDSFAVYPGLNLYPREVDKIVEHTTQIALALGAVGLINIQYVIHA--GR 835

Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           ++ LE+N +   T     P ++   G     L
Sbjct: 836 IYVLEVNPRASRT----VPFLSKATGVPMIRL 863



 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 57/288 (19%), Positives = 109/288 (37%), Gaps = 37/288 (12%)

Query: 7   GISSEREVSLSSGKACASALEDAGF-------------------KVSQIDVD--RSVGLV 45
           G ++E + +   G     AL + G                     V  I+      +  V
Sbjct: 21  GQAAEFDYA---GTQALRALREEGIQSVLVNSNPATIMTDEDVADVVYIEPLTLDVLRRV 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   +PD     L G  G +  V+     IL+   +    + + A   + D+   KQ++ 
Sbjct: 78  IIREQPDGLLPTLGGQTGLNLAVELAEAGILDRYGVRLLGTPLDAIRKAEDRELFKQLLL 137

Query: 102 SCGVPVCPSILVNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G PV  S +V+  T   +    +  P +I+P       G  +    + +   ++   +
Sbjct: 138 DIGEPVIESTIVHSLTEAREFAREVPLPLIIRPAYTLGGTGGGIATTPEELDRIVVAGLA 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIA-VPKSDFYSYELKYSSLNSTHVLPA 217
            +  +Q+L+E+ + G  E+   VM DAS     I  +   D           +S  V P+
Sbjct: 198 ASPINQVLLERSLLGWKEIEYEVMRDASDTCITICNMENMDPMGVHT----GDSIVVAPS 253

Query: 218 K-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +    Y+ ++  A    +A+G  G     F  DP S + + +E+N 
Sbjct: 254 QTLTDREYQMLRNAALKIIRALGIEGGCNVQFALDPNSEQYYVIEVNP 301


>gi|71734435|ref|YP_277220.1| pyruvate carboxylase subunit A [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|289625503|ref|ZP_06458457.1| acetyl-CoA carboxylase subunit A [Pseudomonas syringae pv. aesculi
           str. NCPPB3681]
 gi|289649758|ref|ZP_06481101.1| acetyl-CoA carboxylase subunit A [Pseudomonas syringae pv. aesculi
           str. 2250]
 gi|298489448|ref|ZP_07007459.1| Pyruvate carboxyl transferase subunit A [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|71554988|gb|AAZ34199.1| acetyl-CoA carboxylase, biotin carboxylase, putative [Pseudomonas
           syringae pv. phaseolicola 1448A]
 gi|298156022|gb|EFH97131.1| Pyruvate carboxyl transferase subunit A [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|320321761|gb|EFW77859.1| acetyl-CoA carboxylase subunit A [Pseudomonas syringae pv. glycinea
           str. B076]
 gi|320331511|gb|EFW87451.1| acetyl-CoA carboxylase subunit A [Pseudomonas syringae pv. glycinea
           str. race 4]
 gi|330870937|gb|EGH05646.1| pyruvate carboxylase subunit A [Pseudomonas syringae pv. aesculi
           str. 0893_23]
 gi|330986937|gb|EGH85040.1| pyruvate carboxylase subunit A [Pseudomonas syringae pv. lachrymans
           str. M301315]
 gi|331011972|gb|EGH92028.1| pyruvate carboxylase subunit A [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 471

 Score = 75.2 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 77/221 (34%), Gaps = 20/221 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            LH  +G   E+  +  I     I +            DK  +++ +   GVPV P    
Sbjct: 76  ALHPGYGFLSENAELADICAERGIKFIGPSAEVIRRMGDKTEARRSMIKAGVPVTPGTEG 135

Query: 114 NRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGD 164
           N   +D        I  P ++K   GG   GI      + +           + ++   +
Sbjct: 136 NVADIDEALVEGERIGYPVMLKATSGGGGRGIRRCNSREELEQAFPRVISEATKAFGSAE 195

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDI 223
             L +  V+   +   ++GD+  +V  +            K        + P  ++  + 
Sbjct: 196 VFLEKCIVNPKHIEAQILGDSFGNVVHLFERDCSIQRRNQKL-----IEIAPSPQLTPEQ 250

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              +  L+  A +A+G       +FL      +V+++E+N 
Sbjct: 251 RAYIGDLSVRAAKAVGYENAGTVEFLL--AEGEVYFMEMNT 289


>gi|78045827|ref|YP_362002.1| biotin carboxylase [Xanthomonas campestris pv. vesicatoria str.
           85-10]
 gi|78034257|emb|CAJ21902.1| biotin carboxylase [Xanthomonas campestris pv. vesicatoria str.
           85-10]
          Length = 675

 Score = 75.2 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 74/221 (33%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H  +G   E+           I +      A     DK  +K ++   GVP+ P    
Sbjct: 90  AIHPGYGFLSENAAFAEACAHAGIVFIGPPAAAIRAMGDKSAAKALMQRAGVPLTPGYHG 149

Query: 113 ---VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
                 F       I  P +IK   GG   G+  +    +    L     ++ S      
Sbjct: 150 DEQAPAFLRAQADAIGYPVLIKASAGGGGKGMRRVDTSAAFEDALASCQREAQSAFGNAH 209

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           +L+E+YV     +   V GD   +V  +           ++          PA  +    
Sbjct: 210 VLVEKYVQRPRHIEIQVFGDTHGEVVYL-----FERDCSVQRRHQKVLEEAPAPGMSEAR 264

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              + + A  A QA+G  G    +F+  P     +++E+N 
Sbjct: 265 RAAMGKAAVDAAQAVGYVGAGTVEFIAGP-DGDFYFMEMNT 304


>gi|71275504|ref|ZP_00651790.1| Acetyl-CoA carboxylase, biotin carboxylase [Xylella fastidiosa
           Dixon]
 gi|71900752|ref|ZP_00682873.1| Acetyl-CoA carboxylase, biotin carboxylase [Xylella fastidiosa
           Ann-1]
 gi|170729287|ref|YP_001774720.1| acetyl-CoA carboxylase biotin carboxylase subunit [Xylella
           fastidiosa M12]
 gi|71163804|gb|EAO13520.1| Acetyl-CoA carboxylase, biotin carboxylase [Xylella fastidiosa
           Dixon]
 gi|71729482|gb|EAO31592.1| Acetyl-CoA carboxylase, biotin carboxylase [Xylella fastidiosa
           Ann-1]
 gi|167964080|gb|ACA11090.1| biotin carboxylase [Xylella fastidiosa M12]
          Length = 455

 Score = 75.2 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 40/225 (17%), Positives = 82/225 (36%), Gaps = 27/225 (12%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+      +E     +         L  DK+++   + + GVP  P    
Sbjct: 77  AIHPGYGFLSENASFAERVEQSGFIFIGPRAETIRLMGDKVQAIHAMKAAGVPCVPGSDG 136

Query: 111 -----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWN 161
                I+ N   +     I  P +IK   GG   G+ V+  +  +   +     ++ +  
Sbjct: 137 PLGDDIVAN---VKIAREIGYPVIIKAAGGGGGRGMRVVHTEVGLKAAIETTQCEAKAAF 193

Query: 162 HGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-I 219
              Q+ +E++++    +   V+ D   +   +            K          PA  I
Sbjct: 194 GNGQVYMEKFLENPRHVEIQVLADGQGNAIHLGERDCSMQRRHQK-----VVEEAPAPGI 248

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              +  E+ ++   A   IG RG    +FLF   + + +++E+N 
Sbjct: 249 TEALRNEIGQVCVDACIRIGYRGAGTFEFLF--ENGRFYFIEMNT 291


>gi|330952414|gb|EGH52674.1| pyruvate carboxylase subunit A [Pseudomonas syringae Cit 7]
          Length = 471

 Score = 75.2 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 77/221 (34%), Gaps = 20/221 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            LH  +G   E+  +  I     I +            DK  +++ +   GVPV P    
Sbjct: 76  ALHPGYGFLSENAELADICAERGIKFIGPSAEVIRRMGDKTEARRSMIKAGVPVTPGTEG 135

Query: 114 NRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGD 164
           N   +D        I  P ++K   GG   GI      + +           + ++   +
Sbjct: 136 NVADIDEALAEGERIGYPVMLKATSGGGGRGIRRCNSREELEQAFPRVISEATKAFGSAE 195

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDI 223
             L +  V+   +   ++GD+  +V  +            K        + P  ++  + 
Sbjct: 196 VFLEKCIVNPKHIEAQILGDSFGNVVHLFERDCSIQRRNQKL-----IEIAPSPQLTPEQ 250

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              +  L+  A +A+G       +FL      +V+++E+N 
Sbjct: 251 RAYIGDLSVRAAKAVGYENAGTVEFLL--AEGEVYFMEMNT 289


>gi|330837507|ref|YP_004412148.1| biotin carboxylase; acetyl-CoA carboxylase carboxyltransferase
           subunit alpha [Spirochaeta coccoides DSM 17374]
 gi|329749410|gb|AEC02766.1| biotin carboxylase; acetyl-CoA carboxylase carboxyltransferase
           subunit alpha [Spirochaeta coccoides DSM 17374]
          Length = 452

 Score = 75.2 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 41/244 (16%), Positives = 86/244 (35%), Gaps = 22/244 (9%)

Query: 35  QIDVDRSVGLVLAHLKPDLAF--NVLH---GNFGEDGLVQAILELLEIPYTHSGILASAL 89
             D   S  +    +     F  + +H   G   E+       E   + +        +L
Sbjct: 59  PADTQSSYLMQDNIIMAACVFRCDAIHPGVGFLSENAGFARAAEEAGLIFIGPCPRTISL 118

Query: 90  SMDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145
             DK++++    + G+ + P     +            I  P +IK   GG   GI +++
Sbjct: 119 LGDKLQARMTARNAGLKILPGSDAPVAGEAEACKLAEEIGYPVMIKAANGGGGRGIRIVR 178

Query: 146 KDQS----IPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFY 200
                   +P+   ++        LLIE+Y+D    +   ++GD       + +      
Sbjct: 179 SSDELKKILPVAAREARGAFGDAALLIEKYLDHPRHVEAQLLGDGQGGAIFLGL-----R 233

Query: 201 SYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
              L+          PA  +P  I+  ++  +    +++  RG    +FL+       ++
Sbjct: 234 DCSLQKQHQKLLEESPAPALPEAIHDGMRDASLHLFRSLSYRGAGTVEFLY--QDGAFYF 291

Query: 260 LEIN 263
           LE+N
Sbjct: 292 LEVN 295


>gi|288941622|ref|YP_003443862.1| acetyl-CoA carboxylase, biotin carboxylase [Allochromatium vinosum
           DSM 180]
 gi|298286783|sp|O52058|ACCC_ALLVD RecName: Full=Biotin carboxylase; AltName: Full=Acetyl-CoA
           carboxylase subunit A; Short=ACC
 gi|288896994|gb|ADC62830.1| acetyl-CoA carboxylase, biotin carboxylase [Allochromatium vinosum
           DSM 180]
          Length = 449

 Score = 75.2 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 50/293 (17%), Positives = 101/293 (34%), Gaps = 54/293 (18%)

Query: 13  EVSLSSGKACASALEDAGFKVSQI--DVDRSVGLVL------------------------ 46
           E++L        A  + G K   +  + DR +  VL                        
Sbjct: 15  EIALR----ILRACRELGIKTVAVHSEADRDLKHVLLADESVCIGPAPAMQSYLNVPAII 70

Query: 47  -AHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS 102
            A    D     +H  +G   E+      +E     +         L  DK+ +   + +
Sbjct: 71  SAAEVTDTV--AIHPGYGFLSENADFAERVEKSGFIFIGPRPETIRLMGDKVSAIAAMKA 128

Query: 103 CGVPVCPSI--LVN---RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
            GVP  P     ++   + T++    I  P +IK   GG   G+ V+  + ++   +  +
Sbjct: 129 AGVPCVPGSDGPIDDNKKRTLELAREIGYPIMIKSSGGGGGRGMRVVHSEATLLNAIALT 188

Query: 158 SSWNH----GDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212
            +        D + +E+Y++    +   V+ D   +   +            K       
Sbjct: 189 RAEAAAAFNNDMVYMEKYLENPRHIEFQVLADQMGNAIHLGERDCSMQRRHQK-----VV 243

Query: 213 HVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              PA  I  +  +E+      A ++IG RG    +FL+   + + +++E+N 
Sbjct: 244 EEAPAPGITEEQRREIGERCAAACRSIGYRGAGTFEFLY--ENGQFYFIEMNT 294


>gi|78484788|ref|YP_390713.1| acetyl-CoA carboxylase, biotin carboxylase [Thiomicrospira
           crunogena XCL-2]
 gi|78363074|gb|ABB41039.1| acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha /
           biotin carboxylase [Thiomicrospira crunogena XCL-2]
          Length = 449

 Score = 75.2 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 82/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         +  DK+ + + + + GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAERVEESGFIFMGPKAETIRIMGDKVSAIRAMKAAGVPTVPGSGG 136

Query: 112 -LVNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGD 164
            L +    + Q    I  P +IK   GG   G+ V+  + ++   +     ++ S+    
Sbjct: 137 PLSDDEEANKQLAKEIGYPIIIKASGGGGGRGMRVVHTESNLIKSIQLTKSEAGSFFGNP 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
           ++ +E++++    +   V+ D   +   +            K          PA  I  +
Sbjct: 197 EVYMEKFLETPRHIEIQVLADGQGNAIHLGERDCSMQRRHQK-----VVEEAPAPGITEE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
               + +    A   IG RG    +FL+   + + +++E+N 
Sbjct: 252 QRNRIGQACVNACLEIGYRGAGTFEFLY--ENGEFYFIEMNT 291


>gi|31543464|ref|NP_036876.2| pyruvate carboxylase, mitochondrial precursor [Rattus norvegicus]
 gi|146345499|sp|P52873|PYC_RAT RecName: Full=Pyruvate carboxylase, mitochondrial; AltName:
           Full=Pyruvic carboxylase; Short=PCB; Flags: Precursor
 gi|1040974|gb|AAC52668.1| pyruvate carboxylase [Rattus norvegicus]
 gi|55716041|gb|AAH85680.1| Pcx protein [Rattus norvegicus]
 gi|149061986|gb|EDM12409.1| Pyruvate carboxylase, isoform CRA_a [Rattus norvegicus]
 gi|149061987|gb|EDM12410.1| Pyruvate carboxylase, isoform CRA_a [Rattus norvegicus]
          Length = 1178

 Score = 75.2 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 31/233 (13%), Positives = 75/233 (32%), Gaps = 17/233 (7%)

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
            +  V      D      +G   E        +   + +            DK+ ++ + 
Sbjct: 101 DIIKVAKENGVDAVHPG-YGFLSERADFAQACQDAGVRFIGPSPEVVRKMGDKVEARAIA 159

Query: 101 SSCGVPVCPSILVNRFTMDSQHLI----SPPYVIKPLKGGSSLGIIVIKKDQSIPL---- 152
            + GVPV P       ++   H        P + K   GG   G+ V+   + +      
Sbjct: 160 IAAGVPVVPGTNSPINSLHEAHEFSNTYGFPIIFKAAYGGGGRGMRVVHSYEELEENYTR 219

Query: 153 DLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
              ++ +      L +E++++    +   ++GD   ++  +            K      
Sbjct: 220 AYSEALAAFGNGALFVEKFIEKPRHIEVQILGDQYGNILHLYERDCSIQRRHQK-----V 274

Query: 212 THVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
             + PA  +   +   +   +    + +G       +FL D   +  +++E+N
Sbjct: 275 VEIAPATHLDPQLRSRLTSDSVKLAKQVGYENAGTVEFLVDKHGKH-YFIEVN 326


>gi|330937398|gb|EGH41383.1| pyruvate carboxylase subunit A [Pseudomonas syringae pv. pisi str.
           1704B]
          Length = 471

 Score = 75.2 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 77/221 (34%), Gaps = 20/221 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            LH  +G   E+  +  I     I +            DK  +++ +   GVPV P    
Sbjct: 76  ALHPGYGFLSENAELADICAERGIKFIGPSAEVIRRMGDKTEARRSMIKAGVPVTPGTEG 135

Query: 114 NRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGD 164
           N   +D        I  P ++K   GG   GI      + +           + ++   +
Sbjct: 136 NVADIDEALAEGERIGYPVMLKATSGGGGRGIRRCNSREELEQAFPRVISEATKAFGSAE 195

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDI 223
             L +  V+   +   ++GD+  +V  +            K        + P  ++  + 
Sbjct: 196 VFLEKCIVNPKHIEAQILGDSFGNVVHLFERDCSIQRRNQKL-----IEIAPSPQLTPEQ 250

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              +  L+  A +A+G       +FL      +V+++E+N 
Sbjct: 251 RAYIGDLSVRAAKAVGYENAGTVEFLL--AEGEVYFMEMNT 289


>gi|66048285|ref|YP_238126.1| pyruvate carboxylase subunit A [Pseudomonas syringae pv. syringae
           B728a]
 gi|63258992|gb|AAY40088.1| Acetyl-CoA carboxylase, biotin carboxylase [Pseudomonas syringae
           pv. syringae B728a]
 gi|330970250|gb|EGH70316.1| pyruvate carboxylase subunit A [Pseudomonas syringae pv. aceris
           str. M302273PT]
          Length = 471

 Score = 75.2 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 77/221 (34%), Gaps = 20/221 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            LH  +G   E+  +  I     I +            DK  +++ +   GVPV P    
Sbjct: 76  ALHPGYGFLSENAELADICAERGIKFIGPSAEVIRRMGDKTEARRSMIKAGVPVTPGTEG 135

Query: 114 NRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGD 164
           N   +D        I  P ++K   GG   GI      + +           + ++   +
Sbjct: 136 NVADIDEALAEGERIGYPVMLKATSGGGGRGIRRCNSREELEQAFPRVISEATKAFGSAE 195

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDI 223
             L +  V+   +   ++GD+  +V  +            K        + P  ++  + 
Sbjct: 196 VFLEKCIVNPKHIEAQILGDSFGNVVHLFERDCSIQRRNQKL-----IEIAPSPQLTPEQ 250

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              +  L+  A +A+G       +FL      +V+++E+N 
Sbjct: 251 RAYIGDLSVRAAKAVGYENAGTVEFLL--AEGEVYFMEMNT 289


>gi|108755239|emb|CAK32559.1| Acetyl/propionyl-CoA carboxylase alpha subunit [uncultured
           organism]
          Length = 672

 Score = 75.2 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 38/219 (17%), Positives = 76/219 (34%), Gaps = 17/219 (7%)

Query: 58  LHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS---- 110
           LH  FG   E+      LE  +I +      A     DK+ SK++    GV   P     
Sbjct: 78  LHPGFGFLAENADFVEALEAEDIVFIGPPAGAIRAMGDKIESKRLALDAGVDTVPGHMGV 137

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL----DLLQSSSWNHGDQL 166
           I            +  P ++K   GG   G+ + + + S          ++ +    +++
Sbjct: 138 IADEDEAARIAAQVGYPVMLKASAGGGGKGMRIARDEASAREGFRSARNEARASFGDERI 197

Query: 167 LIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
            IE+Y++    +   V+ DA  ++  +   +        K             +  +   
Sbjct: 198 FIEKYIEEPRHIEIQVLADAHGNMVHLGERECSIQRRHQKII----EEAPSPFLDPETRA 253

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +   A    +A+  R     +F+ D      ++LE+N 
Sbjct: 254 AMGDQAIALAKAVDYRSAGTVEFIVDKNKN-FYFLEMNT 291


>gi|45644671|gb|AAS73059.1| predicted acetyl-CoA carboxylase, biotin carboxylase [uncultured
           marine gamma proteobacterium EBAC20E09]
          Length = 448

 Score = 75.2 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 34/226 (15%), Positives = 74/226 (32%), Gaps = 19/226 (8%)

Query: 50  KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109
           + D  +   +G   E+             +            DK+ +K  V    +P  P
Sbjct: 74  EVDAIYPG-YGFLAENHEFAEQCNKSGFKFIGPSSETIKTMGDKITAKNFVEKFNIPTVP 132

Query: 110 SILVNRFTMDSQ-----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH-- 162
               +    +S+       I  P ++K   GG   G+ V+  +  +   L  +       
Sbjct: 133 GYSKDLPDDESRLKKIVDGIGYPIILKATAGGGGRGMRVVTNENDLLDSLKITKQEALNA 192

Query: 163 --GDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-K 218
              D++ IE+++     +   ++GD   +               L+          PA  
Sbjct: 193 FGNDKVYIEKFIQKPRHIEVQIIGDGKGNAI-----HLGTRDCSLQRRHQKIIEEAPALD 247

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +  D  K +        + I   G    +FL+   +++ +++E+N 
Sbjct: 248 LDADSLKILLDACVHLCKEINYEGAGTLEFLY--ENKEFYFIEMNT 291


>gi|126461634|ref|YP_001042748.1| carbamoyl-phosphate synthase L chain, ATP-binding [Rhodobacter
           sphaeroides ATCC 17029]
 gi|126103298|gb|ABN75976.1| Carbamoyl-phosphate synthase L chain, ATP-binding [Rhodobacter
           sphaeroides ATCC 17029]
          Length = 666

 Score = 75.2 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 74/220 (33%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E     A LE   + +      A     DK+ SK++    GV   P  + 
Sbjct: 77  AVHPGYGFLSERMDFAAALEAAGVVFIGPPSGAIEAMGDKITSKKLAKEAGVSTVPGYMG 136

Query: 114 NRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
                D      + I  P +IK   GG   G+ +   +  +         ++++    D+
Sbjct: 137 LIADADEAVKISNEIGYPVMIKASAGGGGKGMRIAWSEAEVKEGFESSKNEAANSFGDDR 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE++V     +   V+ D   +   +   +        K             +     
Sbjct: 197 IFIEKFVTQPRHIEIQVLADNHGNCVYLHERECSIQRRNQK----VIEEAPSPFLDEATR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K +   A    +A+G       +F+ D      ++LE+N 
Sbjct: 253 KAMGEQACALAKAVGYASAGTVEFIVDGQKN-FYFLEMNT 291


>gi|149919235|ref|ZP_01907718.1| Acetyl-/propionyl-coenzyme A carboxylase alpha chain [Plesiocystis
           pacifica SIR-1]
 gi|149819949|gb|EDM79371.1| Acetyl-/propionyl-coenzyme A carboxylase alpha chain [Plesiocystis
           pacifica SIR-1]
          Length = 510

 Score = 75.2 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 34/225 (15%), Positives = 81/225 (36%), Gaps = 22/225 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E        +   I +   G  A  +  DK+R+++ + +  VP+ P    
Sbjct: 83  AIHPGYGFLSERASFVEACDAAGITFIGPGTEAMNVMGDKVRARKAMIAAEVPLVPGRED 142

Query: 114 NRFTMD---SQHLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGDQL 166
                D   +   I  P ++K   GG   G+ ++  +  +         ++ +     +L
Sbjct: 143 LEGVDDALAAAAEIGYPLMLKASAGGGGKGMRIVHDEAQLRRGFEAAQREALAAFGDGRL 202

Query: 167 LIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP---AKIPLD 222
            +E+ V     +   +M D    V  +     +     ++          P    ++  +
Sbjct: 203 FVERAVMKARHVEIQLMADRHGTVVYL-----NERDCSVQRRHQKVIEEAPSPSPQMTPE 257

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK---VFWLEINV 264
           +   +  +A    +++   G +  +FLF+         ++LE+N 
Sbjct: 258 VRAAMGEVACRVARSVNYVGAATVEFLFEEQDDGEPRFYFLEMNT 302


>gi|94967497|ref|YP_589545.1| carbamoyl-phosphate synthase L chain, ATP-binding [Candidatus
           Koribacter versatilis Ellin345]
 gi|94549547|gb|ABF39471.1| Carbamoyl-phosphate synthase L chain, ATP-binding protein
           [Candidatus Koribacter versatilis Ellin345]
          Length = 1862

 Score = 75.2 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 34/267 (12%), Positives = 79/267 (29%), Gaps = 27/267 (10%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDG 66
           G + ER+       +    L  +            +   L   K + A+ V  G   E  
Sbjct: 61  GPAHERD-------SVTKQLRSSYLDYEL------LRNALTESKSEAAW-VGWGFVAEHA 106

Query: 67  LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQH 122
               +   + I +            DK+ +K++     +PV       +           
Sbjct: 107 DFADLCRHMGIVFIGPSGEVMRRLGDKISAKKLAEKAKIPVAKWSGGPVETVAEAYAHAE 166

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL--LQSSSWNH--GDQLLIEQYVDG-IEL 177
            +  P  IK   GG   GI  +     +       ++ ++       + +E+ +DG   +
Sbjct: 167 RLGYPVFIKASAGGGGRGIRQVNSPAEMARAFEGARNEAFKAFGDPTVFLERRIDGARHV 226

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
              ++ D    +  +          + K             +  +    ++  A    Q 
Sbjct: 227 EVQIIADQFGTIWPLGTRDCTLQRRQQK----VMEEAPCPVLTPEQDLALRDAAVRMGQT 282

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINV 264
                    +FL+   + ++ ++E+N 
Sbjct: 283 AAYVNAGTVEFLYLSKTNRMLFMEMNT 309


>gi|9104817|gb|AAF82862.1|AE003859_3 biotin carboxylase subunit of acetyl CoA carboxylase [Xylella
           fastidiosa 9a5c]
          Length = 469

 Score = 75.2 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 40/225 (17%), Positives = 82/225 (36%), Gaps = 27/225 (12%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+      +E     +         L  DK+++   + + GVP  P    
Sbjct: 91  AIHPGYGFLSENASFAERVEQSGFIFIGPRAETIRLMGDKVQAIHAMKAAGVPCVPGSDG 150

Query: 111 -----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWN 161
                I+ N   +     I  P +IK   GG   G+ V+  +  +   +     ++ +  
Sbjct: 151 PLGDDIVAN---VKIAREIGYPVIIKAAGGGGGRGMRVVHTEVGLKAAIETTQSEAKAAF 207

Query: 162 HGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-I 219
              Q+ +E++++    +   V+ D   +   +            K          PA  I
Sbjct: 208 GNGQVYMEKFLENPRHVEIQVLADGQGNAIHLGERDCSMQRRHQK-----VVEEAPAPGI 262

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              +  E+ ++   A   IG RG    +FLF   + + +++E+N 
Sbjct: 263 TEALRNEIGQVCVDACIRIGYRGAGTFEFLF--ENGRFYFIEMNT 305


>gi|298530534|ref|ZP_07017936.1| carbamoyl-phosphate synthase, large subunit [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298509908|gb|EFI33812.1| carbamoyl-phosphate synthase, large subunit [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 1079

 Score = 75.2 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 50/278 (17%), Positives = 101/278 (36%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G++V  +         D D             +V  ++A  KPD    
Sbjct: 29  SGTQALKALKEEGYQVVLVNSNPATIMTDPDLADQTYIEPIEPDTVARIIAREKPDALLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G  G +  V      +LE   +    + +     +  + + ++ + + G+ V  S +
Sbjct: 89  TLGGQTGLNTAVALSENGVLEKYGVELIGASLPVIQKAESREQFRRAMENIGLKVPKSGI 148

Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                   Q    I+ P +I+P       G  +    + +        S +   ++++E+
Sbjct: 149 ARNMDEARQWTSTIAFPIIIRPAYTLGGTGGGIAYNLEDLEEKAAYGLSCSMTHEIMLEE 208

Query: 171 YVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            V G  E    VM D + + V   ++   D           +S  V P++ +    Y+ +
Sbjct: 209 SVLGWKEFELEVMRDKNDNCVIICSIENLDPMGVHT----GDSITVAPSQTLTDREYQVM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P    +  +E+N 
Sbjct: 265 RNASLDIMREIGVETGGSNVQFAVNPDDGDLVVIEMNP 302



 Score = 50.5 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/194 (13%), Positives = 69/194 (35%), Gaps = 10/194 (5%)

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKP 132
             +P   +   +   + D+ R + +++  G+    +               I  P V++P
Sbjct: 661 AGVPIIGTSPDSIDRAEDRERFQALIAKLGLMQPANGTARSIEEARIIAADIGYPVVVRP 720

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTE 191
                   + ++  ++ +               +L++++++G IE+    + D       
Sbjct: 721 SYVLGGRAMEIVYDEEHLITYFKNHVVVAPEHPILLDKFLEGAIEVDVDALSDGQDTYVA 780

Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
             +   +    E    S +S  V+P   I  D+ +E++       + +   G+    F  
Sbjct: 781 GIMEHIE----EAGVHSGDSACVIPPHTIEQDLLREIEAETISLARELSVVGLINIQFAI 836

Query: 251 DPLSRKVFWLEINV 264
                +V+ LE+N 
Sbjct: 837 KE--GRVYILEVNP 848


>gi|163791238|ref|ZP_02185654.1| acetyl-CoA carboxylase [Carnobacterium sp. AT7]
 gi|159873508|gb|EDP67596.1| acetyl-CoA carboxylase [Carnobacterium sp. AT7]
          Length = 455

 Score = 75.2 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 33/221 (14%), Positives = 79/221 (35%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---- 109
            +H  FG   E+     + + + + +            +K  ++ ++    VPV P    
Sbjct: 77  AIHPGFGFLSENSTFSTMCQEMNVTFIGPDASTIDQMGNKANARALMIEANVPVIPGSEG 136

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGDQ 165
            I            +  P ++K   GG   G+  +   + +         ++ +    DQ
Sbjct: 137 FITDTNEAKQLADQLGYPVMVKAAAGGGGKGMRKVLSSEELVSAFNSAKNEAKAAFGDDQ 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDI 223
           + +E+ ++    +   ++GD   +V              L+ ++       P   I  + 
Sbjct: 197 MYMEKIIEHARHIEVQLLGDHYGNVI-----HLGERDCSLQRNNQKVIEESPSVAINEEQ 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            K++   A  A + +G +     +FL D    + +++E+N 
Sbjct: 252 RKKLGETAIRAAKYVGYKNAGTIEFLLD-QDGEFYFMEMNT 291


>gi|329571889|gb|EGG53567.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecalis
           TX1467]
          Length = 1066

 Score = 75.2 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 50/296 (16%), Positives = 108/296 (36%), Gaps = 34/296 (11%)

Query: 25  ALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNVLHGNFG 63
           AL++ G++V  ++        D+ +                +L   +PD     L G  G
Sbjct: 42  ALKEEGYEVVLVNSNPATIMTDKEIADHVYIEPITLEFVSRILRKERPDALLPTLGGQTG 101

Query: 64  EDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFT 117
            +  ++     IL+ L +    + + A   + D+   KQ++     P+  S +VN     
Sbjct: 102 LNMAMELSESGILDELNVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIVNTVEQA 161

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IE 176
           +     I  P +++P       G  +   ++ +          +   Q LIE+ + G  E
Sbjct: 162 VAFAKQIGYPIIVRPAFTLGGTGGSMCDTEEELRQIAENGLKLSPVTQCLIEKSIAGFKE 221

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +   VM D++ +   I V   + +     ++  +        +    Y+ ++  +    +
Sbjct: 222 IEYEVMRDSADNA--IVVCNMENFDPVGIHTGDSIVFAPSQTLSDYEYQMLRDASLKIIR 279

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           A+   G        DP S   + +E+N  P ++  S     +   GY   +L   +
Sbjct: 280 ALKIEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAKI 331



 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/221 (11%), Positives = 71/221 (32%), Gaps = 13/221 (5%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--QHLISPPYVIKPL 133
            +    + I     + ++   +Q +    +P  P                I  P +++P 
Sbjct: 656 GVKILGTTIEDLDRAENRDLFEQALQELAIPQPPGDTATSAEEAVVIADRIGYPVLVRPS 715

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
                  + +++  + +   +  +   +    +L++ Y+ G E     + D    +    
Sbjct: 716 YVLGGRAMEIVENQKDLEDYMRHAVKASPEHPVLVDSYLLGQECEVDAICDGETVLIPGI 775

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
           +   +           +S  V P + +  +I   +          + C G+    F+   
Sbjct: 776 MEHIERAGVHS----GDSMAVYPPQYLSQEIQATIADYTKKLALGLNCVGMMNIQFVIHE 831

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
              +V+ +E+N +   T     P ++   G    ++    +
Sbjct: 832 --NRVYVIEVNPRASRT----VPFLSKITGIPMAQVATKAI 866


>gi|149007057|ref|ZP_01830726.1| carbamoyl-phosphate synthase, large subunit [Streptococcus
           pneumoniae SP18-BS74]
 gi|307127134|ref|YP_003879165.1| carbamoyl-phosphate synthase large subunit [Streptococcus
           pneumoniae 670-6B]
 gi|147761361|gb|EDK68327.1| carbamoyl-phosphate synthase, large subunit [Streptococcus
           pneumoniae SP18-BS74]
 gi|306484196|gb|ADM91065.1| carbamoyl-phosphate synthase, large subunit [Streptococcus
           pneumoniae 670-6B]
 gi|332074609|gb|EGI85083.1| carbamoyl-phosphate synthase, large subunit [Streptococcus
           pneumoniae GA17545]
          Length = 1058

 Score = 75.2 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 27/228 (11%), Positives = 78/228 (34%), Gaps = 19/228 (8%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--QHLISPPYV 129
           L    +    + +     + D+   +Q +    +P  P          +     I  P +
Sbjct: 646 LAKAGVTILGTQVADLDRAEDRDLFEQALKELDIPQPPGQTATNEEEAALAARKIGFPVL 705

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS--- 186
           ++P        + +++ ++ +   +  +   +    +L++ Y+ G E     + D     
Sbjct: 706 VRPSYVLGGRAMEIVENEEDLRSYMRTAVKASPDHPVLVDSYIVGQECEVDAISDGKNVL 765

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISR 245
           +      + ++  +S        +S  V P + +   + + +          + C G+  
Sbjct: 766 IPGIMEHIERAGVHS-------GDSMAVYPPQTLSQKVQETIADYTKRLAIGLHCLGMMN 818

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
             F+      KV+ +E+N +   T     P ++     S  ++   ++
Sbjct: 819 IQFVI--KDEKVYVIEVNPRASRT----VPFLSKVTNISMAQVATKLI 860



 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 54/302 (17%), Positives = 115/302 (38%), Gaps = 37/302 (12%)

Query: 20  KACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNVL 58
           +AC S L++ G++V  ++        D+ +                +L   +PD     L
Sbjct: 32  QACLS-LKEEGYEVVLVNSNPATIMTDKEIADKVYIEPITLEFVTRILRKERPDALLPTL 90

Query: 59  HGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
            G  G +  ++     IL+ L +    + + A   + D+   KQ++     P+  S +VN
Sbjct: 91  GGQTGLNMAMELSKNGILDELGVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIVN 150

Query: 115 --RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                +     I  P +++P       G  +   ++ +          +   Q LIE+ +
Sbjct: 151 TVEEAIAFAATIGYPVIVRPAFTLGGTGGGMCANEKELREITENGLKLSPVTQCLIERSI 210

Query: 173 DG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRL 230
            G  E+   VM D++ +   + V   + +   +   + +S    PA+ +     + ++  
Sbjct: 211 AGFKEIEYEVMRDSADNA--LVVCNMENFD-PVGIHTGDSIVFAPAQTMSDYENQMLRDA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    +A+   G        DP S K + +E+N  P ++  S     +   GY   +L  
Sbjct: 268 SLSIIRALKIEGGCNVQLALDPNSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325


>gi|227505376|ref|ZP_03935425.1| pyruvate carboxylase [Corynebacterium striatum ATCC 6940]
 gi|227198078|gb|EEI78126.1| pyruvate carboxylase [Corynebacterium striatum ATCC 6940]
          Length = 1143

 Score = 75.2 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 35/239 (14%), Positives = 72/239 (30%), Gaps = 17/239 (7%)

Query: 35  QIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKM 94
            +D+D  +         D  +   +G   E   +    +   I +         L+ DK 
Sbjct: 68  YLDIDEVIRAA-KKSGADAIYPG-YGFLSERADLARACQDNGIKFIGPTPETLDLTGDKA 125

Query: 95  RSKQVVSSCGVPVC-PSILVNRFTMDS--QHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
            +       G+P    S       + +      + P  +K + GG   G+  I+ +  + 
Sbjct: 126 AAVTAAQEAGLPTLQDSEPSTDPDVLAGYAKDFTFPVFVKAVAGGGGRGMRFIENEAELK 185

Query: 152 LD-----LLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
                      +++  G   L    +    +   ++ D+  +V              ++ 
Sbjct: 186 TKCAEASREAEAAFGDGHVYLETAVIKPQHIEVQILADSQGNVV-----HLFERDCSVQR 240

Query: 207 SSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
                  + PA  +   +   +   A    Q I   G    +FL D     VF  E+N 
Sbjct: 241 RHQKVVEIAPAPTLDPQLRDRICADAVKFCQNINYEGAGTVEFLVDEKGNHVFI-EMNP 298


>gi|134299540|ref|YP_001113036.1| carbamoyl phosphate synthase large subunit [Desulfotomaculum
           reducens MI-1]
 gi|134052240|gb|ABO50211.1| carbamoyl-phosphate synthase large subunit [Desulfotomaculum
           reducens MI-1]
          Length = 1071

 Score = 75.2 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 37/262 (14%), Positives = 89/262 (33%), Gaps = 28/262 (10%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ------ 69
           AL++ G +   I         D D S  L    L  +   N+L        +VQ      
Sbjct: 583 ALKEEGIEAITINNNPETVSTDFDTSDRLYFEPLVAEDVMNILEKENPLGVIVQFGGQTA 642

Query: 70  ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHL 123
                 LE        + + A  ++ D+ R  +++    +P  P       +        
Sbjct: 643 INLAKPLEKAGYQILGTSVDAIDIAEDRERFDKLLVDLDIPKPPGRTAYSLQEATAIAGE 702

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + ++   + +   + ++        +L++ Y+ G E     + 
Sbjct: 703 IGFPVLVRPSYVLGGRAMEIVYSQEELHAYMERAVKVTPDHPVLVDHYMVGKEFEVDAIS 762

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRG 242
           D    +    +   +           +S  V PA+ +     +++        +A+G +G
Sbjct: 763 DGKTVLIPGIMEHIERAGVHS----GDSISVYPAQTLTPTQIEQMVSYTERLARALGVKG 818

Query: 243 ISRSDFLFDPLSRKVFWLEINV 264
           +    ++      +++ +E+N 
Sbjct: 819 LVNIQYVLHE--GQIYVIEVNP 838



 Score = 74.4 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 42/232 (18%), Positives = 91/232 (39%), Gaps = 9/232 (3%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMR 95
             V  V+   KPD     L G  G +  +Q     +L+  E+    + + A   + D+  
Sbjct: 72  EFVTRVIRQEKPDGLLPTLGGQVGLNIALQLAEQGVLDEEEVLLLGTPLDAIRKAEDREM 131

Query: 96  SKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153
            K ++     PV  S +V      ++    I  P +++P       G  + K  + +   
Sbjct: 132 FKLMMEQIAEPVPESTIVCSVWEAVEFADDIGYPVIVRPAYTLGGTGGGIAKNQEELKAV 191

Query: 154 LLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212
            ++    +   Q+L+E+ V G  E+   V+ D++ +   I V   + +     ++  +  
Sbjct: 192 AIRGLKHSLIGQILVERSVAGWKEIEYEVIRDSADN--CITVCNMENFDPVGVHTGDSIV 249

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
                 +    Y+ ++  +    +++G  G     F  DP S + + +E+N 
Sbjct: 250 VAPSQTLSDREYQMLRSASLKIIRSLGIEGGCNVQFALDPHSYQYYVIEVNP 301


>gi|326382001|ref|ZP_08203694.1| pyruvate carboxylase [Gordonia neofelifaecis NRRL B-59395]
 gi|326199427|gb|EGD56608.1| pyruvate carboxylase [Gordonia neofelifaecis NRRL B-59395]
          Length = 1130

 Score = 75.2 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 46/241 (19%), Positives = 87/241 (36%), Gaps = 27/241 (11%)

Query: 38  VDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSK 97
           VD  +G  L     D  +   +G   E+  +    E   + +         L+ DK RS 
Sbjct: 65  VDEVIGAALRS-GADAIYPG-YGFLSENPELARACEDNGLVFIGPSAAVLDLAGDKRRSV 122

Query: 98  QVVSSCGVPVC--------PSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS 149
           Q     G+PV         PS LV      +   ++ P  +K + GG   G+  +++   
Sbjct: 123 QAAREAGLPVLTGSAPSADPSELVR-----AAEEMTFPVFVKAIAGGGGRGMRRVERIDE 177

Query: 150 IPLDLLQS-----SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYEL 204
           +   +  +     S++      L +  V+   +   ++ DAS DV  +           L
Sbjct: 178 LAAAVSAASREADSAFGDPTVFLEQAVVEPRHIEVQILADASGDVVHLYE-----RDCSL 232

Query: 205 KYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
           +        + PA  +   +   + R A    + IG       +FL D    + +++E+N
Sbjct: 233 QRRHQKVVEIAPAVGLDSSVRDRICRDAVAFARHIGYTCAGTVEFLLDQR-GEHYFIEMN 291

Query: 264 V 264
            
Sbjct: 292 P 292


>gi|289674686|ref|ZP_06495576.1| Urea amidolyase-related protein [Pseudomonas syringae pv. syringae
           FF5]
          Length = 176

 Score = 75.2 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 29/156 (18%), Positives = 56/156 (35%), Gaps = 9/156 (5%)

Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQLLIE 169
               + + H I  P ++K   GG  +G+ V +  + +                   + IE
Sbjct: 1   REAAIAAAHTIGYPVMLKSTAGGGGIGMRVCRSAEELADSFEAVKRLGQNNFSDAGVFIE 60

Query: 170 QYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           +Y+     L   V GD   +V  + V          K             +P  + +E+ 
Sbjct: 61  KYIQRARHLEVQVFGDGQGEVLALGVRDCSVQRRNQKVL----EETPAPNLPHGMAEELC 116

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             A    +A+  R     +F+FD   ++ ++LE+N 
Sbjct: 117 IAAVKLARAVNYRSAGTVEFVFDSEDQRFYFLEVNT 152


>gi|161378180|ref|NP_297342.2| acetyl-CoA carboxylase biotin carboxylase subunit [Xylella
           fastidiosa 9a5c]
          Length = 455

 Score = 75.2 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 40/225 (17%), Positives = 82/225 (36%), Gaps = 27/225 (12%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+      +E     +         L  DK+++   + + GVP  P    
Sbjct: 77  AIHPGYGFLSENASFAERVEQSGFIFIGPRAETIRLMGDKVQAIHAMKAAGVPCVPGSDG 136

Query: 111 -----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWN 161
                I+ N   +     I  P +IK   GG   G+ V+  +  +   +     ++ +  
Sbjct: 137 PLGDDIVAN---VKIAREIGYPVIIKAAGGGGGRGMRVVHTEVGLKAAIETTQSEAKAAF 193

Query: 162 HGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-I 219
              Q+ +E++++    +   V+ D   +   +            K          PA  I
Sbjct: 194 GNGQVYMEKFLENPRHVEIQVLADGQGNAIHLGERDCSMQRRHQK-----VVEEAPAPGI 248

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              +  E+ ++   A   IG RG    +FLF   + + +++E+N 
Sbjct: 249 TEALRNEIGQVCVDACIRIGYRGAGTFEFLF--ENGRFYFIEMNT 291


>gi|332883341|gb|EGK03624.1| hypothetical protein HMPREF9456_01691 [Dysgonomonas mossii DSM
           22836]
          Length = 500

 Score = 75.2 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 38/243 (15%), Positives = 89/243 (36%), Gaps = 22/243 (9%)

Query: 34  SQIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALS 90
             +D+   + L+    K D     +H  +G   E+           I +           
Sbjct: 66  EFLDI-ECLVLLAKRNKID----AIHPGYGYLSENAEFATRCTEEGIIFIGPSPRIIQNM 120

Query: 91  MDKMRSKQVVSSCGVPVCP----SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            DK+ +K + +   VP+      S+      ++    I  P +IK   GG   G+ +++K
Sbjct: 121 GDKITAKNIAAKGNVPMLGGSNGSVSTLDEAIEISKSIGFPVIIKASAGGGGRGMRIVRK 180

Query: 147 DQSIPL----DLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYS 201
              +         ++ +      + IE+Y++    +   ++ D   ++  +   +    S
Sbjct: 181 QSDLKQMYLSASSEALAAFSNPSVFIEKYLENPKHIEIQIVADTHGNIIHLGERE---CS 237

Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
            + K+  L      PA +  ++ K++   A    +      +   +FL D   +  +++E
Sbjct: 238 VQRKHQKLLEEAPSPA-LDDELRKKMTDAAVSLAREAKYISLGTVEFLLDK-DKNFYFME 295

Query: 262 INV 264
           +N 
Sbjct: 296 MNT 298


>gi|330880962|gb|EGH15111.1| pyruvate carboxylase subunit A [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 463

 Score = 75.2 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 77/221 (34%), Gaps = 20/221 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            LH  +G   E+  +  I     I +            DK  +++ +   GVPV P    
Sbjct: 76  ALHPGYGFLSENAELADICAERGIKFIGPSAEVIRRMGDKTEARRSMIKAGVPVTPGTEG 135

Query: 114 NRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGD 164
           N   +D        I  P ++K   GG   GI      + +           + ++   +
Sbjct: 136 NVADIDEALVEGERIGYPVMLKATSGGGGRGIRRCNSREELEQAFPRVISEATKAFGSAE 195

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDI 223
             L +  V+   +   ++GD+  +V  +            K        + P  ++  + 
Sbjct: 196 VFLEKCIVNPKHIEAQILGDSFGNVVHLFERDCSIQRRNQKL-----IEIAPSPQLTPEQ 250

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              +  L+  A +A+G       +FL      +V+++E+N 
Sbjct: 251 RAYIGDLSVRAAKAVGYENAGTVEFLL--AEGEVYFMEMNT 289


>gi|37521338|ref|NP_924715.1| carbamoyl phosphate synthase large subunit [Gloeobacter violaceus
           PCC 7421]
 gi|35212335|dbj|BAC89710.1| carbamoyl phosphate synthetase large chain [Gloeobacter violaceus
           PCC 7421]
          Length = 1083

 Score = 75.2 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 47/279 (16%), Positives = 100/279 (35%), Gaps = 36/279 (12%)

Query: 18  SGKACASALEDAGFKVSQID---------------------VDRSVGLVLAHLKPDLAFN 56
           SG     AL + G+++  ++                         V  ++   +PD    
Sbjct: 29  SGTQACKALREEGYEIVLVNSNPATIMTDPATADRTYIEPVTAEFVERIIERERPDALLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G    +  V+     +L+   +    + + A   + D+   KQ +   G+ V  S  
Sbjct: 89  TMGGQTALNVTVELAESGVLDRYGVELIGAKLPAIKKAEDRELFKQAMEKIGLAVPRSGF 148

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
              +    + ++ + S P +++P       G  +    +     +      +   Q+L+E
Sbjct: 149 AHTLEEARVVAEEIGSFPLILRPSFTLGGTGGGIAYNREEFERMIRVGLDASPTSQVLVE 208

Query: 170 QYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKE 226
           +   G  E    VM D + +V  I   ++    ++       +S  V PA+ +    Y+ 
Sbjct: 209 ESALGWKEYELEVMRDLADNVVIICSIEN----FDPMGVHTGDSITVAPAQTLTDKEYQR 264

Query: 227 VQRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           ++  A    + IG   G S   F   P + +V  +E+N 
Sbjct: 265 LRDAAIKVIREIGVETGGSNIQFAVHPENGRVIVIEMNP 303



 Score = 64.4 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 36/224 (16%), Positives = 86/224 (38%), Gaps = 15/224 (6%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---QHLISPPY 128
           LE   +P   +   +  ++ D+ R +Q+    G+    + +  R T D+      I  P 
Sbjct: 652 LEKAGVPIWGTSPDSIDIAEDRERFEQLCQQLGIRQPANGMA-RSTADAVAVAGRIGYPV 710

Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASL 187
           V++P        + ++  D+ +   +  +        +LI++++ D +E+    + D + 
Sbjct: 711 VVRPSYVLGGRAMEIVYTDEGLGRYMAHAVQVEPDRPILIDKFLEDAVEVDVDAICDRTG 770

Query: 188 DVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRS 246
            V    + +   +  +    S +S  VLP + +   +   ++       +A+   G+   
Sbjct: 771 QVVIGGIME---HIEQAGIHSGDSACVLPTRTLDESVLAVIRDWTVKLARALKVVGLMNI 827

Query: 247 DFLFDP--LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
            +         +V+ LE N +   T     P +A   G    ++
Sbjct: 828 QYAVKAHREGAEVYVLEANPRASRT----VPFVAKATGVPLAKI 867


>gi|332526808|ref|ZP_08402909.1| carbamoyl-phosphate synthase L chain, ATP-binding protein
           [Rubrivivax benzoatilyticus JA2]
 gi|332111210|gb|EGJ11242.1| carbamoyl-phosphate synthase L chain, ATP-binding protein
           [Rubrivivax benzoatilyticus JA2]
          Length = 640

 Score = 75.2 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 37/200 (18%), Positives = 72/200 (36%), Gaps = 18/200 (9%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD----SQHLISPPYVIK 131
            + +      A     DK  +K+ + + GVP  P  L +  + +        +  P ++K
Sbjct: 102 GLVFIGPPAEAIRAMGDKAGAKRRMLAAGVPCAPGYLGDDQSDERLAAEAEALGLPLLVK 161

Query: 132 PLKGGSSLGIIVIKKD-----QSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDA 185
            + GG   G+ ++++                S++    +L++E+ + G   +   V  DA
Sbjct: 162 AVAGGGGRGMRLVRQPGELAAALAGARREAESAFG-DGRLMLERLITGARHVEVQVFADA 220

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRGIS 244
                              +          P+ I    +   + R A  A  A+G RG  
Sbjct: 221 HGQAV-----HLGERDCTAQRRRQKVVEEAPSPIVGEAMRATMGRDAVAAALAVGYRGAG 275

Query: 245 RSDFLFDPLSRKVFWLEINV 264
             +F+ D   R  F+LE+N 
Sbjct: 276 TVEFVVDAEGRH-FFLEMNT 294


>gi|295703486|ref|YP_003596561.1| pyruvate carboxylase [Bacillus megaterium DSM 319]
 gi|294801145|gb|ADF38211.1| pyruvate carboxylase [Bacillus megaterium DSM 319]
          Length = 1149

 Score = 75.2 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 33/221 (14%), Positives = 75/221 (33%), Gaps = 20/221 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       E   I +         +  DK++++       +PV P    
Sbjct: 84  AIHPGYGFLSENIQFAKRCEEEGIIFIGPKSKHLDMFGDKVKARHQAVQADIPVIPGTDG 143

Query: 114 NRFTMDSQHLI----SPPYVIKPLKGGSSLGIIVIKKDQSIPL----DLLQSSSWNHGDQ 165
              ++D           P +IK   GG   G+ +++   S+         ++ +    D+
Sbjct: 144 PIDSIDEAKEFANQHGYPLMIKAALGGGGRGMRIVRDADSLNESYDRAKSEAKAAFGNDE 203

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDI 223
           + +E+ V+    +   ++GD   +V  +           ++        V P   I  D+
Sbjct: 204 VYVEKLVENPKHIEVQILGDEQGNVVHLYE-----RDCSVQRRHQKVVEVAPSVSIDEDL 258

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              +   A    + +        +FL        +++E+N 
Sbjct: 259 RLRICEAAVQLMEKVQYINAGTVEFLV--SGNDFYFIEVNP 297


>gi|262199309|ref|YP_003270518.1| ATP-dependent carboxylate-amine ligase domain protein ATP-grasp
           [Haliangium ochraceum DSM 14365]
 gi|262082656|gb|ACY18625.1| ATP-dependent carboxylate-amine ligase domain protein ATP-grasp
           [Haliangium ochraceum DSM 14365]
          Length = 410

 Score = 75.2 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 38/159 (23%), Positives = 70/159 (44%), Gaps = 10/159 (6%)

Query: 86  ASALSM-DKMRSKQVVSSCGVPVCP--SILVNRFTMDSQHLISPPYVIKPLKGGSSLGII 142
            SA++  DK+  K+++ S GVPV    S       +  +     PYV+KP +GG S+G+ 
Sbjct: 105 TSAVAYRDKLIMKRLLRSAGVPVAACASAETPFDILAFEDSYGYPYVVKPRRGGGSVGVH 164

Query: 143 VIKKDQSIPLDLL--QSSSWNHGDQLLIEQYVDGIELTC-GVMGDASLDVTEIAVPKSDF 199
           VI+  Q +   L    S S+     L++EQY++G      G++ D ++ +   +V     
Sbjct: 165 VIRTRQQLQELLEGGLSHSFESDSDLMLEQYIEGTVHHVDGLIVDGAVKLCWPSVYWDSP 224

Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
            S+    +   +T          +   +Q       +A+
Sbjct: 225 LSFNENQTYGGATLAA----SNPLCARLQEFVARTIEAL 259


>gi|114778232|ref|ZP_01453104.1| carbamoyl-phosphate synthase large subunit [Mariprofundus
           ferrooxydans PV-1]
 gi|114551479|gb|EAU54034.1| carbamoyl-phosphate synthase large subunit [Mariprofundus
           ferrooxydans PV-1]
          Length = 1071

 Score = 75.2 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 47/278 (16%), Positives = 96/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G++V  +         D +              V  ++   +PD    
Sbjct: 29  SGVQACKALKEEGYRVILVNSNPATIMTDPEFADATYIEPVTWEVVAKIIEKERPDAILP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      ILE   +    +   A  ++ D+ R K  +   G+ +     
Sbjct: 89  TMGGQTALNCALSLNKHGILEKFNVKLIGAQPDAIDMAEDRERFKDAMDRLGLEMARGGF 148

Query: 113 VNRFTMDS--QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +           I  P +I+P       G  +    +            +  D++L+E+
Sbjct: 149 AHSMDEARSLASDIGYPIIIRPSFTLGGSGGGIAYNPEEFEQIAASGIDASPTDEILVEE 208

Query: 171 YVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            + G  E    VM D + + V   ++   D           +S  V PA+ +    Y+ +
Sbjct: 209 SIIGWKEFEMEVMRDHADNCVIICSIENLDPMGVHT----GDSITVAPAQTLTDKEYQRM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P+  ++  +E+N 
Sbjct: 265 RNASIAILREIGVETGGSNVQFAVNPVDGRLIVIEMNP 302



 Score = 62.8 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 30/196 (15%), Positives = 73/196 (37%), Gaps = 8/196 (4%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           LE   +P   +      L+ D+ R ++++    +    +         +     I  P V
Sbjct: 651 LEAAGVPIIGTNPDMIDLAEDRERFQKLLHELKLLQPENGTARSTDEALAVAANIGYPVV 710

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + V+  ++ +   + ++   +    +L+++++ + IEL    + D    
Sbjct: 711 VRPSYVLGGRAMQVVHNEKGLLRYMREAVQASPDHPVLLDRFLNNAIELDVDALSDGKRV 770

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           V    +   +       +S  ++  + P  I   I  EV+R       A+  +G+    F
Sbjct: 771 VIGGIMEHIEEAGV---HSGDSACCLPPHSISDAIIDEVRRQTAALGLALHVKGLLNIQF 827

Query: 249 LFDPLSRKVFWLEINV 264
                   ++ LE+N 
Sbjct: 828 AV--QGETIYVLEVNP 841


>gi|261338697|ref|ZP_05966581.1| acetyl-CoA carboxylase alpha chain [Bifidobacterium gallicum DSM
           20093]
 gi|270276247|gb|EFA22101.1| acetyl-CoA carboxylase alpha chain [Bifidobacterium gallicum DSM
           20093]
          Length = 589

 Score = 75.2 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 37/206 (17%), Positives = 77/206 (37%), Gaps = 17/206 (8%)

Query: 69  QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM----DSQHLI 124
           QA+++   + +      A  L   K+ ++++ +  G P+ P        +    D     
Sbjct: 92  QAVID-AGMVWIGPSPQAMRLLGSKVAARRLAALVGAPMAPGTTEPVHDVYEVVDFAQRH 150

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS-----SSWNHGDQLLIEQYV-DGIELT 178
             P  IK + GG   G+ V+     IP    Q+     S++ +GD   +E+++     + 
Sbjct: 151 GMPIAIKAVYGGGGRGLKVVHTIDDIPEAFQQATDEALSAFGNGD-CFVERFLARPRHVE 209

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             ++ D +  V  I            K             +   I +++ + A    +A 
Sbjct: 210 VQILADHAGAVRAIGTRDCSLQRRNQK----LIEEAPAPYLDAAIEQQLMQAAVNICKAA 265

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINV 264
              G+   +FL DP    + ++E+N 
Sbjct: 266 DYTGVGTVEFLVDP-DGTMSFMEVNT 290


>gi|77408053|ref|ZP_00784801.1| carbamoyl-phosphate synthase, large subunit [Streptococcus
           agalactiae COH1]
 gi|77173318|gb|EAO76439.1| carbamoyl-phosphate synthase, large subunit [Streptococcus
           agalactiae COH1]
          Length = 1060

 Score = 75.2 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 29/225 (12%), Positives = 81/225 (36%), Gaps = 13/225 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           L    +    + +     + ++ + +  + +  +P  P          +++   I  P +
Sbjct: 646 LNKAGVKILGTQLEDLDRAENRKQFEATLQALNIPQPPGFTATTEEEAVNAAQKIGYPVL 705

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           ++P        + +++ ++ +   +  +   +    +LI+ Y+ G E     + D     
Sbjct: 706 VRPSYVLGGRAMKIVENEEDLRHYMTTAVKASPDHPVLIDAYLIGKECEVDAISDGQ--- 762

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
             I +P    +       S +S  V P + +   I + +          + C G+    F
Sbjct: 763 -NILIPGIMEHIERAGVHSGDSMAVYPPQTLSETIIETIVDYTKRLAIGLNCIGMMNIQF 821

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +     +KV+ +E+N + G T     P ++        ++   ++
Sbjct: 822 VI--KDQKVYVIEVNPRAGRT----LPFLSKVTHIPMAQVATKVI 860



 Score = 73.2 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 58/315 (18%), Positives = 119/315 (37%), Gaps = 39/315 (12%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQID-------VDRSVGL--------------V 45
           G ++E + S   G     +L++ G++V  ++        D+ +                +
Sbjct: 21  GQAAEFDYS---GTQACLSLKEEGYQVVLVNSNPATIMTDKDIADKVYIEPITLEFVTRI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           L   +PD     L G  G +  +      ILE L +    + + A   + D+   KQ++ 
Sbjct: 78  LRKERPDALLPTLGGQTGLNMAMALSKNGILEELNVELLGTKLSAIDKAEDRDLFKQLME 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
               P+  S +VN     +     I  P +++P       G  +    + +     +   
Sbjct: 138 ELNQPIPESEIVNSVEEAIQFAEQIGYPLIVRPAFTLGGTGGGMCDNQEQLVDITTKGLK 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   Q LIE+ + G  E+   VM DA+ +   + V   + +   +   + +S    PA+
Sbjct: 198 LSPVTQCLIERSIAGFKEIEYEVMRDAADNA--LVVCNMENFD-PVGIHTGDSIVFAPAQ 254

Query: 219 IPLDIYKE-VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
              D+  + ++  +    +A+   G        DP S K + +E+N  P ++  S     
Sbjct: 255 TLSDVENQLLRDASLDIIRALKIEGGCNVQLALDPNSFKYYVIEVN--PRVSRSS--ALA 310

Query: 278 AAYAGYSFRELLLWM 292
           +   GY   +L   +
Sbjct: 311 SKATGYPIAKLAAKI 325


>gi|325266645|ref|ZP_08133322.1| acetyl-CoA carboxylase, biotin carboxylase [Kingella denitrificans
           ATCC 33394]
 gi|324982088|gb|EGC17723.1| acetyl-CoA carboxylase, biotin carboxylase [Kingella denitrificans
           ATCC 33394]
          Length = 456

 Score = 75.2 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 78/222 (35%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      +E     +         L  DK+ +K  +   GVP  P    
Sbjct: 77  AIHPGYGFLAENANFAEQVEKSGFIFIGPKADTIRLMGDKVSAKHAMIEAGVPCVPGSEG 136

Query: 114 NRFTMDSQ-----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
                 ++       +  P +IK   GG   G+ V++K + +   +     ++ +     
Sbjct: 137 ALSDDPAEILKTADKVGFPVIIKASGGGGGRGMRVVEKKEDLIKAVEMTKAEAEAAFGNP 196

Query: 165 QLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+++     +   V+ D   +   +            K          PA  I  +
Sbjct: 197 MVYMERFLQRPRHVEIQVLADEHGNAIYLGERDCSMQRRHQK-----IIEEAPAPFITPE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              ++ +    A + IG RG    +FL+     + F++E+N 
Sbjct: 252 ERAKIGQSCADACKRIGYRGAGTFEFLY--EDGEFFFIEMNT 291


>gi|315499991|ref|YP_004088794.1| acetyl-CoA carboxylase, biotin carboxylase [Asticcacaulis
           excentricus CB 48]
 gi|315418003|gb|ADU14643.1| acetyl-CoA carboxylase, biotin carboxylase [Asticcacaulis
           excentricus CB 48]
          Length = 459

 Score = 75.2 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 79/220 (35%), Gaps = 18/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---- 109
            +H  +G   E+     I+    + +         L  DK+ +KQ     G+PV P    
Sbjct: 83  AIHPGYGFLSENARFAEIVGAHGMTFIGPQPDHIRLMGDKITAKQAAKDSGIPVVPGSDG 142

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
            +      +++   I  P +IK   GG   G+ V      +   ++    ++++      
Sbjct: 143 GVATVEDAIEASKSIGFPLIIKAAAGGGGRGMKVAANADVLAEQVMSAQTEAAAAFGDGT 202

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+Y+     +   V+ D+  +V  +            K             I     
Sbjct: 203 VYMERYLQKPRHIEIQVIADSHGNVVHLGERDCSLQRRHQKVL----EEAPSPVIDAAAR 258

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            ++  +   A + IG  G+   +FL+     + F++E+N 
Sbjct: 259 DKIGMIVVEAIRKIGYLGVGTIEFLY--EDGEFFFIEMNT 296


>gi|154489782|ref|ZP_02030043.1| hypothetical protein PARMER_00010 [Parabacteroides merdae ATCC
           43184]
 gi|154089507|gb|EDN88551.1| hypothetical protein PARMER_00010 [Parabacteroides merdae ATCC
           43184]
          Length = 513

 Score = 75.2 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 43/220 (19%), Positives = 82/220 (37%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       +   I +            DK+ +++ +   GVPV P    
Sbjct: 85  AIHPGYGFLSENADFARRCKEEGIVFIGPSAETMEAMGDKISARKRMIDAGVPVVPGTQQ 144

Query: 114 NRFTMDSQH----LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
               +         I  P ++K   GG   G+ +I K++ +      + S +      D 
Sbjct: 145 PLQDVGEACRVCREIGFPVMLKASMGGGGKGMRLIHKEEEVEEAYNAARSESLSSFGDDT 204

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+YV+G   +   ++GD   +V  +   +        K             I  ++ 
Sbjct: 205 VYLEKYVEGPHHIEFQILGDNYGNVVHLCERECSVQRRNQKI----VEESPSPFITPELR 260

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           KE+   A  A +A+   G    +FL D   R  ++LE+N 
Sbjct: 261 KEMGEKAVAAAKAVDYSGAGTIEFLVDKH-RNFYFLEMNT 299


>gi|20804031|emb|CAD31608.1| FUSION PROTEIN CONTAINS PUTATIVE LIGASE AND PROBABLE
           ARGINOSUCCINATE LYASE [Mesorhizobium loti R7A]
          Length = 899

 Score = 75.2 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 43/229 (18%), Positives = 87/229 (37%), Gaps = 23/229 (10%)

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS--PPYVIKP 132
           + +P   +   A A   +K +    +    + V  + LV+      + L+    P V+KP
Sbjct: 93  IGLP--AARPEAIANCRNKWKQVTELQRQCISVPETRLVSSIRDVEKALVQTIFPVVVKP 150

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG------DQLLIEQYVDGIELTCGVMG-DA 185
           + G  S G+ + +    +      +             ++LI+QYV+G E +  ++  + 
Sbjct: 151 VSGSGSSGVRLCENTSEVVEAFEGAKRVLLDQVDLRSPEILIQQYVEGQEYSAEIIAYNG 210

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR-GIS 244
           SL    I                +   H  PA +P     E+   A  A  A+G   G +
Sbjct: 211 SLHCLGIIAKHKG-----AAPCFVEIGHDFPAPLPEPSRHELASFAAGAVSALGLDFGPA 265

Query: 245 RSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYA-GYSFRELLLWM 292
             +F+          +E+N +       + P M ++A G S  ++++ +
Sbjct: 266 HVEFVITESG--PVIIEVNPR---LAGGMIPVMLSHALGTSIPDMMIKL 309


>gi|54310472|ref|YP_131492.1| acetyl-CoA carboxylase biotin carboxylase subunit [Photobacterium
           profundum SS9]
 gi|46914915|emb|CAG21690.1| putative acetyl-CoA carboxylase, biotin carboxylase [Photobacterium
           profundum SS9]
          Length = 447

 Score = 75.2 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 39/222 (17%), Positives = 80/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         +  DK+ +   +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAEQVERSGFIFVGPKAETIRMMGDKVSAITAMKKAGVPCVPGSDG 136

Query: 112 LVNRFTMD---SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
            +N            I  P +IK   GG   G+ V++ +  +   +     ++ S+ + D
Sbjct: 137 PLNDDEAKNKSFAKRIGFPVIIKASGGGGGRGMRVVRSEAELAEAIAMTRAEAKSFFNND 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+Y++    +   +M D   +   +            K          PA  I  +
Sbjct: 197 VVYMEKYLENPRHIEVQIMADGQGNAIHLGERDCSMQRRHQK-----VVEEAPAPGITEE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + K +      A   IG RG    +FL+   + + +++E+N 
Sbjct: 252 MRKFIGERCTRACIEIGYRGAGTFEFLY--ENGEFYFIEMNT 291


>gi|224823998|ref|ZP_03697106.1| pyruvate carboxylase [Lutiella nitroferrum 2002]
 gi|224603417|gb|EEG09592.1| pyruvate carboxylase [Lutiella nitroferrum 2002]
          Length = 1145

 Score = 75.2 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 27/196 (13%), Positives = 70/196 (35%), Gaps = 15/196 (7%)

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH----LISPPYVIKPLK 134
           +            +K+ ++++    GVPV P+     + +         +  P ++K   
Sbjct: 105 FIGPQPEVMRQLGNKVSARELAEQAGVPVVPATGALPYELAEAQRMAAAVGYPLMLKASW 164

Query: 135 GGSSLGIIVIKKDQSIPLDLLQS-----SSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           GG   G+ V++ +  +   +  +     S++ + +  L +       +   ++GD     
Sbjct: 165 GGGGRGMRVVENEGELAGAMEVARREAKSAFGNDEVYLEKLVRRAHHVEVQILGD----- 219

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           T   +         ++  +       PA  +      ++   A    +A+G       +F
Sbjct: 220 THGNLVHLFERDCSVQRRNQKVVERAPAPYLNESQRADLCEAALKLARAVGYTHAGTVEF 279

Query: 249 LFDPLSRKVFWLEINV 264
           L D  +   +++E+N 
Sbjct: 280 LMDADTGAFYFIEVNP 295


>gi|162447321|ref|YP_001620453.1| acetyl-CoA carboxylase, biotin carboxylase [Acholeplasma laidlawii
           PG-8A]
 gi|161985428|gb|ABX81077.1| acetyl-CoA carboxylase, biotin carboxylase [Acholeplasma laidlawii
           PG-8A]
          Length = 459

 Score = 75.2 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 40/224 (17%), Positives = 83/224 (37%), Gaps = 23/224 (10%)

Query: 56  NVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--- 109
           N +H  +G   E+     ++E   I +        +   DK  ++ +  + GVPV     
Sbjct: 77  NAIHPGYGFLAENAKFIEMVEATGIKFIGPSSNVVSKLGDKATARAIAKAVGVPVVEGSD 136

Query: 110 SILVNRFT-MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGD 164
            ++ N+   +     I  P +IK   GG   GI V   D            ++ S     
Sbjct: 137 GVVENKEIGLKIAKQIGYPIMIKASSGGGGRGISVCHNDTEFKKAFDMTSMEAESAFGDK 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK---IP 220
            + IE++V+    +   ++ D+  +V  +       Y  +      N   +  A    + 
Sbjct: 197 SVYIEKFVENPRHIEIQIIADSKGNVVHL-------YERDCSMQRRNQKLIEEAPSSILN 249

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            D+ +++ + A    + +G       +FL D      +++E+N 
Sbjct: 250 EDLRRKMGQSAVKLAKHVGYENAGTIEFLVDSRKN-YYFIEMNT 292


>gi|209546633|ref|YP_002278551.1| acetyl-CoA carboxylase, biotin carboxylase [Rhizobium leguminosarum
           bv. trifolii WSM2304]
 gi|209537877|gb|ACI57811.1| acetyl-CoA carboxylase, biotin carboxylase [Rhizobium leguminosarum
           bv. trifolii WSM2304]
          Length = 464

 Score = 75.2 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 39/217 (17%), Positives = 81/217 (37%), Gaps = 18/217 (8%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVN 114
           +G   E+      +E   + +      + A   DK+ +K+ + + GVP  P     +  +
Sbjct: 95  YGFLSENAAFADAVEKAGLTFIGPTASSIATMGDKIAAKRAMMAAGVPCVPGPDSALPDD 154

Query: 115 RFTMDSQHL-ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG----DQLLIE 169
              ++   L I  P ++K   GG   G+ V+ K   +   +  +            L +E
Sbjct: 155 PEAIERIALEIGYPVIVKASGGGGGRGMRVVLKADQLHEAIALTREEARKAFGSPALYME 214

Query: 170 QYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
           ++++    +   V+ D   +   +           ++          PA  I  DI + V
Sbjct: 215 KFLEHPRHIEIQVICDDRGNAVWL-----GHRDCSMQRRHQKVVEEAPAPGIAPDIIQPV 269

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
                 A + IG RG+   +FL+       +++E+N 
Sbjct: 270 GMACVQACRQIGYRGVGTFEFLY--EDGAFYFIEMNT 304


>gi|295133843|ref|YP_003584519.1| biotin carboxylase [Zunongwangia profunda SM-A87]
 gi|294981858|gb|ADF52323.1| biotin carboxylase [Zunongwangia profunda SM-A87]
          Length = 484

 Score = 75.2 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 40/219 (18%), Positives = 80/219 (36%), Gaps = 17/219 (7%)

Query: 58  LHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS---- 110
           +H  +G   E+      +E   I +      A  +   K+ +K  V    +P+ P     
Sbjct: 77  IHPGYGFLSENADFAEAVEEAGISFIGPRSKAIRIMGSKLAAKDAVKKYDIPMVPGIDEA 136

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSWNHGDQL 166
           I   +        I  P +IK   GG   G+ V+++++ +       + ++ S      +
Sbjct: 137 ITDTKKAKKIAAEIGYPILIKASAGGGGKGMRVVEQEKDLEDQMKRAISEAKSAFGDGSV 196

Query: 167 LIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
            IE+YV     +   V+ D   +   +   +        K             +   + +
Sbjct: 197 FIEKYVASPRHIEIQVLADTHGNTLHLFERECSVQRRHQK----VIEEAPSVVLDAKLRE 252

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           E+ + A    +A    G    +FLFD  +R  ++LE+N 
Sbjct: 253 EMGKAAVRVAEACDYVGAGTVEFLFDE-NRNFYFLEMNT 290


>gi|298490013|ref|YP_003720190.1| carbamoyl-phosphate synthase large subunit ['Nostoc azollae' 0708]
 gi|298231931|gb|ADI63067.1| carbamoyl-phosphate synthase, large subunit ['Nostoc azollae' 0708]
          Length = 1094

 Score = 75.2 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 55/279 (19%), Positives = 106/279 (37%), Gaps = 36/279 (12%)

Query: 18  SGKACASALEDAGFKVSQID------------VDRS---------VGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++             DR+         V  V+   +PD    
Sbjct: 29  SGTQACKALREEGYEVVLVNSNPATIMTDPETADRTYIEPLTPELVAKVIEKERPDALLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  V      +L+   +    + + A   + ++    + +   GVPVCPS  
Sbjct: 89  TMGGQTALNLAVALSKNGVLDKYNVELIGAKLPAIEKAENRKLFNEAMGKIGVPVCPSGT 148

Query: 113 ---VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
              +      + H+ + P +I+P       G  +    +   L        +   Q+LI+
Sbjct: 149 ASSLEESKEIAHHIGTYPLIIRPAFTMGGTGGGIAYNQEEFELMAQVGIDASPVSQILID 208

Query: 170 QYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKE 226
           Q + G  E    VM D + +V  I   ++    ++       +S  V PA+ +    Y+ 
Sbjct: 209 QSLLGWKEYELEVMRDLADNVVIICSIEN----FDPMGIHTGDSITVAPAQTLTDKEYQR 264

Query: 227 VQRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           ++ +A    + IG   G S   F  +P++  V  +E+N 
Sbjct: 265 LRDMAIKIIREIGVETGGSNIQFAVNPVNGDVVVIEMNP 303



 Score = 58.6 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/215 (13%), Positives = 80/215 (37%), Gaps = 14/215 (6%)

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGSS 138
            +   +  ++ ++ R + ++    +   P+ +   +   +     I  P V++P      
Sbjct: 677 GTSPDSIDMAENRERFENILQELNIAQPPNGIARSYEDALIVAKRIGYPVVVRPSYVLGG 736

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKS 197
            G+ ++  D  +   +  +        +LI+++++  IE+    + D +  V    + + 
Sbjct: 737 RGMEIVYSDAELERYMTFAVQVEPEHPILIDKFLENAIEVDVDAIADYTGKVVIGGIME- 795

Query: 198 DFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR- 255
             +  +    S +S   LP   +   +  +++       QA+   G+    F     +  
Sbjct: 796 --HIEQAGIHSGDSACSLPSISLSPAVLNQIRTWTVQLAQALSVVGLMNIQFAVVGANGY 853

Query: 256 --KVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
             +V+ LE N +   T     P ++   G    +L
Sbjct: 854 SPQVYILEANPRASRT----VPFVSKATGIPLAKL 884


>gi|88704574|ref|ZP_01102287.1| acetyl CoA carboxylase, biotin carboxylase subunit [Congregibacter
           litoralis KT71]
 gi|88700895|gb|EAQ98001.1| acetyl CoA carboxylase, biotin carboxylase subunit [Congregibacter
           litoralis KT71]
          Length = 447

 Score = 75.2 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 76/222 (34%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         L  DK+ +K  + +  VP  P    
Sbjct: 77  AIHPGYGFLAENADFAEQVEQSGFIFIGPRSETIRLMGDKVSAKDAMKAANVPTVPGSDG 136

Query: 112 ---LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGD 164
                    ++    +  P +IK   GG   G+ V+  + ++   +     ++++    D
Sbjct: 137 PLPDDPEEMIEIGRQVGYPVIIKAAAGGGGRGMRVVHNEAALVNSVQITKSEAAAAFGSD 196

Query: 165 QLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLD 222
            + +E+Y+     +   V+ D   +               L+          PA +I   
Sbjct: 197 VVYMEKYLQRPRHVEIQVISDGKGNTI-----HLGDRDCSLQRRHQKVIEEAPAPEIDPV 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +E       A   IG RG    +FL+       +++E+N 
Sbjct: 252 AREECAAACVKACNEIGYRGAGTFEFLY--EDGGFYFIEMNT 291


>gi|333027644|ref|ZP_08455708.1| putative carboxylase [Streptomyces sp. Tu6071]
 gi|332747496|gb|EGJ77937.1| putative carboxylase [Streptomyces sp. Tu6071]
          Length = 854

 Score = 75.2 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 41/195 (21%), Positives = 79/195 (40%), Gaps = 24/195 (12%)

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSS 138
            + + A     DK  ++++ +  GVP   S+ V        +   I  P V+KP    +S
Sbjct: 538 GNSVEAMLACRDKGTTRRLFAEAGVPSARSVRVQSVHEAAQAAATIGYPVVLKPASHAAS 597

Query: 139 LGIIVIKKDQSIPLD--LLQSSSWNHGDQ---LLIEQYVDGIELTCGVM----GDASLDV 189
           +G+I   + +++        + +   G +   +L+E+Y+DG E++   M       +L V
Sbjct: 598 IGVIKASRPEALAEAWEFANAGAGEQGPEGHGVLVEEYLDGPEISVECMTFAGETVALAV 657

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR-GISRSDF 248
           T   V  + F+         ++     + +PL     V  +A  A  A+G   GIS  + 
Sbjct: 658 TRKEVSFAPFFE-----EVGHTVERDDSLLPL-----VSPVARQALAALGVTDGISHVEM 707

Query: 249 LFDPLSRKVFWLEIN 263
                      +E+N
Sbjct: 708 RVTK--NGPRIIEVN 720


>gi|257465271|ref|ZP_05629642.1| acetyl-CoA carboxylase biotin carboxylase subunit [Actinobacillus
           minor 202]
 gi|257450931|gb|EEV24974.1| acetyl-CoA carboxylase biotin carboxylase subunit [Actinobacillus
           minor 202]
          Length = 447

 Score = 75.2 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 81/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         L  DK+ +   +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAEQVEKSGFIFIGPTADVIRLMGDKVSAINAMKKAGVPCVPGSDG 136

Query: 112 ---LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
                 R   +    I  P +IK   GG   G+ V+  ++ +   +     ++ +  + D
Sbjct: 137 PVGNDARKNKEIAKRIGYPVIIKASGGGGGRGMRVVYNEKDLEESIAMTKAEAKAAFNND 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+Y++    +   V+ D   +   +A           K          PA  I  +
Sbjct: 197 MVYMEKYLENPRHIEIQVLADTHGNAVYLAERDCSMQRRHQK-----VVEEAPAPGITPE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + K +      A + IG RG    +FLF   + + +++E+N 
Sbjct: 252 LRKFIGERCANACREIGYRGAGTFEFLF--ENGEFYFIEMNT 291


>gi|256616987|ref|ZP_05473833.1| pyruvate carboxylase [Enterococcus faecalis ATCC 4200]
 gi|256596514|gb|EEU15690.1| pyruvate carboxylase [Enterococcus faecalis ATCC 4200]
          Length = 1142

 Score = 75.2 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 31/221 (14%), Positives = 72/221 (32%), Gaps = 20/221 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+       E   I +         +  DK+++K+   + G+   P    
Sbjct: 77  AIHPGYGFLSENLRFAERCEEEGIIFVGPKTHHLDIFGDKIKAKEAAVAAGIASIPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGDQ 165
            +      +        P +IK   GG   G+ V    +           ++ +    D+
Sbjct: 137 PVATVEEVVAFGETHGFPIMIKAALGGGGRGMRVAHDAKEAREGYERAKSEAKAAFGSDE 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDI 223
           + +E+Y+ +   +   ++GD   +V              ++        V P   +  + 
Sbjct: 197 VYVEKYISNPKHIEVQILGDHHGNVL-----HLFERDCSVQRRHQKVVEVAPCVSMNEEQ 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              +   A      +G       +FL      + +++E+N 
Sbjct: 252 RAAICSAAVQLMAHVGYVNAGTVEFLV--EGDQFYFIEVNP 290


>gi|254497546|ref|ZP_05110338.1| acyl CoA carboxylase subunit alpha subunit [Legionella drancourtii
           LLAP12]
 gi|254353263|gb|EET12006.1| acyl CoA carboxylase subunit alpha subunit [Legionella drancourtii
           LLAP12]
          Length = 654

 Score = 75.2 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 72/220 (32%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+          EI +    + A      K  +KQ++    VP+ P    
Sbjct: 77  AIHPGYGFLSENPEFAKACNEAEIVFIGPSVEAMEAMASKQLAKQMLEKSSVPLTPGYHG 136

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
           +    +        I  P +IK   GG   G+  +  +      L  +   +      D 
Sbjct: 137 SEQAEERLLAEAKKIGFPVLIKAANGGGGKGMRTVHSESEFSSALAGAKRESMTSFADDT 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           ++IE+ V     +   +M D   +V  +            K             +   + 
Sbjct: 197 MIIEKLVLHPRHVELQIMADNHGNVVHLFERDCSIQRRHQKII----EEAPAPNLSPALR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +++   A    ++I   G    +FL D      +++E+N 
Sbjct: 253 QKLADAACDVARSIKYSGAGTVEFLVDG-DEHFYFMEMNT 291


>gi|240949921|ref|ZP_04754242.1| acetyl-CoA carboxylase biotin carboxylase subunit [Actinobacillus
           minor NM305]
 gi|240295640|gb|EER46353.1| acetyl-CoA carboxylase biotin carboxylase subunit [Actinobacillus
           minor NM305]
          Length = 447

 Score = 75.2 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 81/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         L  DK+ +   +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAEQVEKSGFIFIGPTADVIRLMGDKVSAINAMKKAGVPCVPGSDG 136

Query: 112 ---LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
                 R   +    I  P +IK   GG   G+ V+  ++ +   +     ++ +  + D
Sbjct: 137 PVGNDARKNKEIAKRIGYPVIIKASGGGGGRGMRVVYNEKDLEESIAMTKAEAKAAFNND 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+Y++    +   V+ D   +   +A           K          PA  I  +
Sbjct: 197 MVYMEKYLENPRHIEIQVLADTHGNAVYLAERDCSMQRRHQK-----VVEEAPAPGITPE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + K +      A + IG RG    +FLF   + + +++E+N 
Sbjct: 252 LRKFIGERCANACREIGYRGAGTFEFLF--ENGEFYFIEMNT 291


>gi|269795135|ref|YP_003314590.1| pyruvate carboxylase [Sanguibacter keddieii DSM 10542]
 gi|269097320|gb|ACZ21756.1| pyruvate carboxylase [Sanguibacter keddieii DSM 10542]
          Length = 1134

 Score = 75.2 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 40/251 (15%), Positives = 90/251 (35%), Gaps = 22/251 (8%)

Query: 28  DAGFKVS-QIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           + G  V   +D+D  +  V      D  +   +G   E+  +       ++ +       
Sbjct: 55  EEGHPVRAYLDIDE-IIRVAKGAGADAVYPG-YGFLSENPDLARACVEADLTFIGPPAEV 112

Query: 87  SALSMDKMRSKQVVSSCGVPVC----PSILVNRFTMDSQHLISPPYVIKPLKGGSSLGII 142
             L+ +K+R+ +     G+PV     PS  ++   +++   I  P   K + GG   G+ 
Sbjct: 113 LELAGNKVRALKAAREAGIPVLESSEPSADLDEL-VEAADRIGFPIFAKAVAGGGGRGMR 171

Query: 143 VIKKDQSIPLDLLQS-----SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKS 197
            + + + +   L  +     S++      L +  +    +   ++ D S +V        
Sbjct: 172 RVDRREDLREALQAAMREADSAFGDPTMFLEQAVLRPRHIEVQILADGSGEVV-----HL 226

Query: 198 DFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS-- 254
                 ++        + PA  +   I   +   A    +AIG +     +FL D +   
Sbjct: 227 FERDCSVQRRHQKVIEIAPAPNLDPAIRDALCADAVRFARAIGYQNAGTVEFLVDTVGER 286

Query: 255 -RKVFWLEINV 264
             +  ++E+N 
Sbjct: 287 AGQHVFIEMNP 297


>gi|188996191|ref|YP_001930442.1| Carbamoyl-phosphate synthase L chain ATP-binding
           [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188931258|gb|ACD65888.1| Carbamoyl-phosphate synthase L chain ATP-binding
           [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 558

 Score = 75.2 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 48/289 (16%), Positives = 103/289 (35%), Gaps = 38/289 (13%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQID---------------------VDRSVGLV 45
           G ++E + S   G   A AL++ G++V  ++                     +   +  +
Sbjct: 21  GQAAEFDYS---GTQGAKALKEEGYRVILVNSNPATIMTDPNIADKTYIEPLITPVLEKI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   +PD     L G    +  +    + IL+   +    +       + D+   K+ + 
Sbjct: 78  IEKERPDAILPTLGGQTALNLAIDLYEKGILDKYNVELIGAKYEVIKKAEDRDLFKKAME 137

Query: 102 SCGVPVCPSILVNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
           + G+ +  S +V       +    I  P +I+P       G  +          +     
Sbjct: 138 NIGLSMPKSAVVKSIAEAEEVIDWIGFPVIIRPSFTLGGTGGSIAYNRDEFYPKVKAGLD 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
            +   ++L+E+ V G  E    VM D + + V   ++   D           +S  V PA
Sbjct: 198 ASPIHEVLLEESVIGWKEFEMEVMRDKNDNCVIICSIENLDPMGVHT----GDSITVAPA 253

Query: 218 -KIPLDIYKEVQRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
             +    Y+ ++  +    + IG   G S   F  +P + + + +E+N 
Sbjct: 254 ITLSDREYQILRNYSIAVMREIGVETGGSNVQFSQNPKTGEFYVIEMNP 302


>gi|322374548|ref|ZP_08049062.1| carbamoyl-phosphate synthase, large subunit [Streptococcus sp.
           C300]
 gi|321280048|gb|EFX57087.1| carbamoyl-phosphate synthase, large subunit [Streptococcus sp.
           C300]
          Length = 1058

 Score = 75.2 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 26/228 (11%), Positives = 77/228 (33%), Gaps = 19/228 (8%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYV 129
           L    +    + +     + D+   +Q +    +P  P            +   I  P +
Sbjct: 646 LAKAGVTILGTQVADLDRAEDRDLFEQALKDLDIPQPPGQTATNEEEAVLAARKIGFPVL 705

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS--- 186
           ++P        + +++ ++ +   +  +   +    +L++ Y+ G E     + D     
Sbjct: 706 VRPSYVLGGRAMEIVENEEDLRSYMRTAVKASPDHPVLVDSYIVGQECEVDAISDGENVL 765

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISR 245
           +      + ++  +S        +S  V P + +   + + +          + C G+  
Sbjct: 766 IPGIMEHIERAGVHS-------GDSMAVYPPQTLSQKVQETIADYTKRLAIGLNCLGMMN 818

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
             F+      KV+ +E+N +   T     P ++        ++   ++
Sbjct: 819 IQFVI--KDEKVYVIEVNPRASRT----VPFLSKVTNIPMAQVATKLI 860



 Score = 70.5 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 54/302 (17%), Positives = 115/302 (38%), Gaps = 37/302 (12%)

Query: 20  KACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNVL 58
           +AC S L++ G++V  ++        D+ +                +L   +PD     L
Sbjct: 32  QACLS-LKEEGYEVVLVNSNPATIMTDKEIADKVYIEPITLEFVTRILRKERPDALLPTL 90

Query: 59  HGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
            G  G +  ++     IL+ L +    + + A   + D+   KQ++     P+  S +VN
Sbjct: 91  GGQTGLNMAMELSKNGILDELGVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIVN 150

Query: 115 --RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                +     I  P +++P       G  +   ++ +          +   Q LIE+ +
Sbjct: 151 TVEEAVAFAATIGYPVIVRPAFTLGGTGGGMCANEEELREIAENGLKLSPVTQCLIERSI 210

Query: 173 DG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRL 230
            G  E+   VM D++ +   + V   + +   +   + +S    PA+ +     + ++  
Sbjct: 211 AGFKEIEYEVMRDSADNA--LVVCNMENFD-PVGIHTGDSIVFAPAQTMSDYENQMLRDA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    +A+   G        DP S K + +E+N  P ++  S     +   GY   +L  
Sbjct: 268 SLSIIRALKIEGGCNVQLALDPHSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325


>gi|312136344|ref|YP_004003681.1| pyruvate carboxylase subunit a [Methanothermus fervidus DSM 2088]
 gi|311224063|gb|ADP76919.1| pyruvate carboxylase subunit A [Methanothermus fervidus DSM 2088]
          Length = 496

 Score = 75.2 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 79/220 (35%), Gaps = 18/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---- 109
            +H  +G   E+  +    E   I +            DK+ +K+++S  GVP  P    
Sbjct: 77  AIHPGYGFLAENPKLPKECEKRGIKFIGPSASIMKTMGDKIAAKKLMSKVGVPTIPGTEK 136

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
            +   +  +     I  P +IK   GG  +G+  + ++  +   +  + S         +
Sbjct: 137 GVKSVKKALKIADEIGYPVIIKAAAGGGGVGMRTVYEEDEMERAMESAKSLAKSVFGDSR 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+Y +    +   V+ D   +   +   +        K             +  ++ 
Sbjct: 197 VYIEKYFEKPRHIEFQVLADEHGNAIHLGDRECSIQRRHQK----LIEEAPSPIVNKELR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +++  +   A + IG       +FL+       ++LE+N 
Sbjct: 253 EKIGSMVVNATKEIGYTNAGTFEFLY--ADGNFYFLEMNT 290


>gi|307277110|ref|ZP_07558214.1| pyruvate carboxylase [Enterococcus faecalis TX2134]
 gi|306506040|gb|EFM75206.1| pyruvate carboxylase [Enterococcus faecalis TX2134]
          Length = 1152

 Score = 75.2 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 31/221 (14%), Positives = 72/221 (32%), Gaps = 20/221 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+       E   I +         +  DK+++K+   + G+   P    
Sbjct: 87  AIHPGYGFLSENLRFAERCEEEGIIFVGPKTHHLDIFGDKIKAKEAAVAAGIASIPGSDG 146

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGDQ 165
            +      +        P +IK   GG   G+ V    +           ++ +    D+
Sbjct: 147 PVATVEEVVAFGETHGFPIMIKAALGGGGRGMRVAHDAKEAREGYERAKSEAKAAFGSDE 206

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDI 223
           + +E+Y+ +   +   ++GD   +V              ++        V P   +  + 
Sbjct: 207 VYVEKYISNPKHIEVQILGDHHGNVL-----HLFERDCSVQRRHQKVVEVAPCVSMNEEQ 261

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              +   A      +G       +FL      + +++E+N 
Sbjct: 262 RAAICSAAVQLMAHVGYVNAGTVEFLV--EGDQFYFIEVNP 300


>gi|307704966|ref|ZP_07641854.1| carbamoyl-phosphate synthase pyrimidine-specific large chain
           [Streptococcus mitis SK597]
 gi|307621476|gb|EFO00525.1| carbamoyl-phosphate synthase pyrimidine-specific large chain
           [Streptococcus mitis SK597]
          Length = 1058

 Score = 74.8 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 26/228 (11%), Positives = 77/228 (33%), Gaps = 19/228 (8%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYV 129
           L    +    + +     + D+   +Q +    +P  P            +   I  P +
Sbjct: 646 LAQAGVTILGTQVADLDRAEDRDLFEQALKDLDIPQPPGQTATNEEEAVLAARKIGFPVL 705

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS--- 186
           ++P        + +++ ++ +   +  +   +    +L++ Y+ G E     + D     
Sbjct: 706 VRPSYVLGGRAMEIVENEEDLRSYMRTAVKASPDHPVLVDSYIVGQECEVDAISDGENVL 765

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISR 245
           +      + ++  +S        +S  V P + +   + + +          + C G+  
Sbjct: 766 IPGIMEHIERAGVHS-------GDSMAVYPPQTLSQKVQETIADYTKRLAIGLNCLGMMN 818

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
             F+      KV+ +E+N +   T     P ++        ++   ++
Sbjct: 819 IQFVI--KDEKVYVIEVNPRASRT----VPFLSKVTNIPMAQVATKLI 860



 Score = 70.2 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 54/302 (17%), Positives = 115/302 (38%), Gaps = 37/302 (12%)

Query: 20  KACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNVL 58
           +AC S L++ G++V  ++        D+ +                +L   +PD     L
Sbjct: 32  QACLS-LKEEGYEVVLVNSNPATIMTDKEIADKVYIEPITLEFVTRILRKERPDALLPTL 90

Query: 59  HGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
            G  G +  ++     IL+ L +    + + A   + D+   KQ++     P+  S +VN
Sbjct: 91  GGQTGLNMAMELSKNGILDELGVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIVN 150

Query: 115 --RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                +     I  P +++P       G  +   ++ +          +   Q LIE+ +
Sbjct: 151 TVEEAVAFAATIGYPVIVRPAFTLGGTGGGMCANEEELREIAENGLKLSPVTQCLIERSI 210

Query: 173 DG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRL 230
            G  E+   VM D++ +   + V   + +   +   + +S    PA+ +     + ++  
Sbjct: 211 AGFKEIEYEVMRDSADNA--LVVCNMENFD-PVGIHTGDSIVFAPAQTMSDYENQMLRDA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    +A+   G        DP S K + +E+N  P ++  S     +   GY   +L  
Sbjct: 268 SLSIIRALKIEGGCNVQLALDPHSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325


>gi|306825482|ref|ZP_07458822.1| carbamoyl-phosphate synthase, large subunit [Streptococcus sp. oral
           taxon 071 str. 73H25AP]
 gi|304432420|gb|EFM35396.1| carbamoyl-phosphate synthase, large subunit [Streptococcus sp. oral
           taxon 071 str. 73H25AP]
          Length = 1058

 Score = 74.8 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 26/228 (11%), Positives = 77/228 (33%), Gaps = 19/228 (8%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYV 129
           L    +    + +     + D+   +Q +    +P  P            +   I  P +
Sbjct: 646 LAKAGVTILGTQVADLDRAEDRDLFEQALKDLDIPQPPGQTATNEEEAVLAARKIGFPVL 705

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS--- 186
           ++P        + +++ ++ +   +  +   +    +L++ Y+ G E     + D     
Sbjct: 706 VRPSYVLGGRAMEIVENEEDLRSYMRTAVKASPDHPVLVDSYIVGQECEVDAISDGENVL 765

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISR 245
           +      + ++  +S        +S  V P + +   + + +          + C G+  
Sbjct: 766 IPGIMEHIERAGVHS-------GDSMAVYPPQTLSQKVQETIADYTKRLAIGLNCLGMMN 818

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
             F+      KV+ +E+N +   T     P ++        ++   ++
Sbjct: 819 IQFVI--KDEKVYVIEVNPRASRT----VPFLSKVTNIPMAQVATKLI 860



 Score = 70.2 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 54/302 (17%), Positives = 115/302 (38%), Gaps = 37/302 (12%)

Query: 20  KACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNVL 58
           +AC S L++ G++V  ++        D+ +                +L   +PD     L
Sbjct: 32  QACLS-LKEEGYEVVLVNSNPATIMTDKEIADKVYIEPITLEFVTRILRKERPDALLPTL 90

Query: 59  HGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
            G  G +  ++     IL+ L +    + + A   + D+   KQ++     P+  S +VN
Sbjct: 91  GGQTGLNMAMELSKNGILDELGVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIVN 150

Query: 115 --RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                +     I  P +++P       G  +   ++ +          +   Q LIE+ +
Sbjct: 151 TVEEAVAFAATIGYPVIVRPAFTLGGTGGGMCANEEELREIAENGLKLSPVTQCLIERSI 210

Query: 173 DG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRL 230
            G  E+   VM D++ +   + V   + +   +   + +S    PA+ +     + ++  
Sbjct: 211 AGFKEIEYEVMRDSADNA--LVVCNMENFD-PVGIHTGDSIVFAPAQTMSDYENQMLRDA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    +A+   G        DP S K + +E+N  P ++  S     +   GY   +L  
Sbjct: 268 SLSIIRALKIEGGCNVQLALDPHSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325


>gi|302392285|ref|YP_003828105.1| carbamoyl-phosphate synthase large subunit [Acetohalobium
           arabaticum DSM 5501]
 gi|302204362|gb|ADL13040.1| carbamoyl-phosphate synthase large subunit [Acetohalobium
           arabaticum DSM 5501]
          Length = 1067

 Score = 74.8 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 56/287 (19%), Positives = 108/287 (37%), Gaps = 35/287 (12%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI---------DVD------------RSVGLV 45
           G ++E + S   G     AL++ G +V  +         D D              V  V
Sbjct: 21  GQAAEFDYS---GTQACKALKEEGIEVVLVNSNPATIMTDTDIADQVYVEPITIDFVEEV 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   +PD     L G  G +  V+     ILE   I    + + +   + D+ R +  + 
Sbjct: 78  IKKEEPDGILPTLGGQTGLNLAVELAEAGILEETGIELLGTSLDSIQRAEDRDRFRATME 137

Query: 102 SCGVPVCPSILVNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G PV  S +++      +    I  P +I+P       G  +    Q +   + +  +
Sbjct: 138 EIGQPVAESQIIDTLAEAKEFVAEIGFPVIIRPAYTMGGAGGGIADNSQELEDIVSRGLN 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   Q+LIE+ + G  E+   V+ D + +   I   ++      +   + +S  V P++
Sbjct: 198 NSPISQVLIEKSIAGWKEIEYEVLRDGADNCIVICNMEN---IDPVGIHTGDSIVVAPSQ 254

Query: 219 IPLDIYKEVQRLA-FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              D+  ++ R A     + +G  G     F   P S   + +E+N 
Sbjct: 255 TLADLEYQMLRSASLEIIKELGIEGGCNVQFALHPDSLDYYVIEVNP 301



 Score = 72.1 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 31/214 (14%), Positives = 78/214 (36%), Gaps = 13/214 (6%)

Query: 71  ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV--PVCPSILVNRFTMDSQHLISPPY 128
           +L    +    + + +  L+ D+ +  QV+    +  P   +       +     +  P 
Sbjct: 647 LLAERGVEVLGTPVKSMDLAEDRDKFTQVLDELNIDYPAGTTATSREEALAIADDLGYPL 706

Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD 188
           +++P        + V+ K++ +   +  +   +    +LI++Y+ G E+    + D +  
Sbjct: 707 LVRPSYVLGGRAMQVVYKEEELVEYMELAVKVSPDHPVLIDRYIPGKEVEIDAIADGNNA 766

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           V    +   +    +    S +S  V P + +       +        + +   G+    
Sbjct: 767 VIPGIMEHIE----KAGVHSGDSMAVYPPQTLTDQQIDRIVEDTIKIVKRLEMNGLVNIQ 822

Query: 248 FLFDPLSRKVFWLEIN-----VQPGMTPVSIFPE 276
           F+ D    K + LE+N       P ++ V+  P 
Sbjct: 823 FVIDK-EGKPYVLEVNPRASRTIPILSKVTGVPM 855


>gi|227549958|ref|ZP_03980007.1| pyruvate carboxylase [Corynebacterium lipophiloflavum DSM 44291]
 gi|227077974|gb|EEI15937.1| pyruvate carboxylase [Corynebacterium lipophiloflavum DSM 44291]
          Length = 1136

 Score = 74.8 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 34/239 (14%), Positives = 75/239 (31%), Gaps = 17/239 (7%)

Query: 35  QIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKM 94
            +D+D  +         D  +   +G   E   +        I +         L+ DK 
Sbjct: 67  YLDIDE-IIAAAKKTGADAVYPG-YGFLSERAELARECAENGITFIGPSPETLDLTGDKA 124

Query: 95  RSKQVVSSCGVPVCPSILVNRF---TMDSQHLISPPYVIKPLKGGSSLGIIVIK---KDQ 148
            + Q     G+P       +       +       P  +K + GG   G+  ++     +
Sbjct: 125 AAVQAAERAGLPTLKDSEPSDDPAQIAEFAKEFEFPVFVKAVAGGGGRGMRFVERQVDVE 184

Query: 149 SIPLDLLQSSSWNH-GDQLLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
            +  +  + +       ++ +E+  ++   +   ++ D   +V              L+ 
Sbjct: 185 KLAAEASREAEAAFGDPRVYVERAVINPQHIEVQILADGQGNVI-----HLFERDCSLQR 239

Query: 207 SSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
                  + PA+ I  +  + +   A    + I   G    +FL D     VF  E+N 
Sbjct: 240 RHQKVVEIAPAQHITREQRERICADAVRFCEEINYAGAGTVEFLVDENGNHVFI-EMNP 297


>gi|194218512|ref|XP_001917468.1| PREDICTED: pyruvate carboxylase [Equus caballus]
          Length = 1178

 Score = 74.8 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/233 (13%), Positives = 75/233 (32%), Gaps = 17/233 (7%)

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
            +  V      D      +G   E        +   + +            DK+ ++ + 
Sbjct: 101 DIIKVAKENNVDAVHPG-YGFLSERADFAQACQDAGVRFIGPSPEVVRKMGDKVEARAIA 159

Query: 101 SSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP----L 152
            S GVPV P     I       +  +    P + K   GG   G+ V+   + +      
Sbjct: 160 ISAGVPVVPGTDAPITSLHEAHEFSNTYGFPIIFKAAYGGGGRGMRVVHSYEELEDNYTR 219

Query: 153 DLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
              ++ +      L +E++++    +   ++GD   ++  +            K      
Sbjct: 220 AYSEALAAFGNGALFVEKFIEKPRHIEVQILGDQYGNILHLYERDCSIQRRHQK-----V 274

Query: 212 THVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
             + P A +   +   +   +    + +G       +FL D   +  +++E+N
Sbjct: 275 VEIAPAAHLDPQLRARLTGDSVKLAKQVGYENAGTVEFLVDKHGKH-YFIEVN 326


>gi|228966968|ref|ZP_04128006.1| Pyruvate carboxylase [Bacillus thuringiensis serovar sotto str.
           T04001]
 gi|228792702|gb|EEM40266.1| Pyruvate carboxylase [Bacillus thuringiensis serovar sotto str.
           T04001]
          Length = 1058

 Score = 74.8 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 25/203 (12%), Positives = 69/203 (33%), Gaps = 17/203 (8%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPP 127
            E   I +         +  DK++++       +PV P     +               P
Sbjct: 11  CEEEGIIFIGPKSKHLDMFGDKVKARTQAQLAQIPVIPGSDGPVDSLEEVEKFAEKYDYP 70

Query: 128 YVIKPLKGGSSLGIIVIKKDQSIPL----DLLQSSSWNHGDQLLIEQYVD-GIELTCGVM 182
            +IK   GG   G+ +++  + +         ++ +    D++ +E++V+    +   ++
Sbjct: 71  IIIKASLGGGGRGMRIVRTSEELGESYNRAKSEAKAAFGNDEVYVEKFVEKPKHIEVQIL 130

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCR 241
            D   +V  +           ++        + P   +  D+ + +   A    + +   
Sbjct: 131 ADEEGNVVHLYE-----RDCSVQRRHQKVVEIAPSVSLSDDLRQRICDAAVKLTKNVNYL 185

Query: 242 GISRSDFLFDPLSRKVFWLEINV 264
                +FL      + +++E+N 
Sbjct: 186 NAGTVEFLV--KDDEFYFIEVNP 206


>gi|306829264|ref|ZP_07462454.1| carbamoyl-phosphate synthase, large subunit [Streptococcus mitis
           ATCC 6249]
 gi|304428350|gb|EFM31440.1| carbamoyl-phosphate synthase, large subunit [Streptococcus mitis
           ATCC 6249]
          Length = 1058

 Score = 74.8 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 26/228 (11%), Positives = 77/228 (33%), Gaps = 19/228 (8%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYV 129
           L    +    + +     + D+   +Q +    +P  P            +   I  P +
Sbjct: 646 LAKAGVTILGTQVADLDRAEDRDLFEQALKDLDIPQPPGQTATNEEEAVLAARKIGFPVL 705

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS--- 186
           ++P        + +++ ++ +   +  +   +    +L++ Y+ G E     + D     
Sbjct: 706 VRPSYVLGGRAMEIVENEEDLRSYMRTAVKASPDHPVLVDSYIVGQECEVDAISDGENVL 765

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISR 245
           +      + ++  +S        +S  V P + +   + + +          + C G+  
Sbjct: 766 IPGIMEHIERAGVHS-------GDSMAVYPPQTLSQKVQETIADYTKRLAIGLNCLGMMN 818

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
             F+      KV+ +E+N +   T     P ++        ++   ++
Sbjct: 819 IQFVI--KDEKVYVIEVNPRASRT----VPFLSKVTNIPMAQVATKLI 860



 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 54/302 (17%), Positives = 114/302 (37%), Gaps = 37/302 (12%)

Query: 20  KACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNVL 58
           +AC S L++ G++V  ++        D+ +                +L    PD     L
Sbjct: 32  QACLS-LKEEGYEVVLVNSNPATIMTDKEIADKVYIEPITLEFVTRILRKELPDALLPTL 90

Query: 59  HGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
            G  G +  ++     IL+ L +    + + A   + D+   KQ++     P+  S +VN
Sbjct: 91  GGQTGLNMAMELSKNGILDELGVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIVN 150

Query: 115 --RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                +     I  P +++P       G  +   ++ +          +   Q LIE+ +
Sbjct: 151 TVEEAVTFAATIGYPVIVRPAFTLGGTGGGMCANEEELREIAENGLKLSPVTQCLIERSI 210

Query: 173 DG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRL 230
            G  E+   VM D++ +   + V   + +   +   + +S    PA+ +     + ++  
Sbjct: 211 AGFKEIEYEVMRDSADNA--LVVCNMENFD-PVGIHTGDSIVFAPAQTMSDYENQMLRDA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    +A+   G        DP S K + +E+N  P ++  S     +   GY   +L  
Sbjct: 268 SLSIIRALKIEGGCNVQLALDPHSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325


>gi|194289329|ref|YP_002005236.1| pyruvate carboxylase [Cupriavidus taiwanensis LMG 19424]
 gi|193223164|emb|CAQ69169.1| putative Pyruvate carboxylase [Cupriavidus taiwanensis LMG 19424]
          Length = 1200

 Score = 74.8 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 42/246 (17%), Positives = 91/246 (36%), Gaps = 25/246 (10%)

Query: 33  VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLV-QAILELLEIPYTHSGILASA 88
            + +D+D  +  +    + D     +H  +G   E+    QA+++   I +         
Sbjct: 96  AAYLDID-DILRIARQARVD----AIHPGYGFLSENPEFAQAVID-AGIRWVGPLPEVMR 149

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSLGIIVI 144
              +K+ ++    + GVPV P+       +++       I  P ++K   GG   G+ V+
Sbjct: 150 KLGNKVAARNAAIAAGVPVMPATDPLPHDLEACKRLAAAIGYPLMLKASWGGGGRGMRVL 209

Query: 145 KKDQSIPLDLLQSSSWNH----GDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDF 199
           + +Q +   L  +          D++ +E+ V     +   V+GD   ++  +       
Sbjct: 210 EGEQDLEGALAAARREALAAFGNDEVYVEKLVRNARHVEVQVLGDTHGNLVHLYERDCTV 269

Query: 200 YSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
                K          PA  +       +   A    +A+G       +FL D  S + +
Sbjct: 270 QRRNQK-----VVERAPAPYLDAAGRGALCDSALRLMRAVGYTHAGTVEFLMDADSGQFY 324

Query: 259 WLEINV 264
           ++E+N 
Sbjct: 325 FIEVNP 330


>gi|241664205|ref|YP_002982565.1| acetyl-CoA carboxylase biotin carboxylase subunit [Ralstonia
           pickettii 12D]
 gi|309783078|ref|ZP_07677797.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Ralstonia sp.
           5_7_47FAA]
 gi|240866232|gb|ACS63893.1| acetyl-CoA carboxylase, biotin carboxylase [Ralstonia pickettii
           12D]
 gi|308918186|gb|EFP63864.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Ralstonia sp.
           5_7_47FAA]
          Length = 455

 Score = 74.8 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 82/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +      +  L  DK+ +KQ +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAERVEQSGFTFIGPTPESIRLMGDKVSAKQAMIKSGVPCVPGSEG 136

Query: 112 ---LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
                 +  + +   +  P +IK   GG   G+ V+  + ++   +     ++       
Sbjct: 137 ALPEDPKEILATAKKVGYPVIIKAAGGGGGRGMRVVHTEAALINAVNMTREEAGRAFGNP 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
           ++ +E++++    +   V+ D   +   +            K          PA  IP  
Sbjct: 197 EVYMEKFLEHPRHVEIQVLADQHRNAVWLGERDCSMQRRHQK-----VIEEAPAPHIPRR 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + + +      A + IG RG    +FL+   + + +++E+N 
Sbjct: 252 LIERIGDRCAEACKKIGYRGAGTFEFLY--ENGEFYFIEMNT 291


>gi|2127793|pir||A64472 carbamoyl-phosphate synthase, large chain (EC 6.3.-.-) -
           Methanococcus jannaschii
          Length = 487

 Score = 74.8 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 47/277 (16%), Positives = 94/277 (33%), Gaps = 34/277 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVDRSVGLVLA------------HLKPDLAFN 56
           SG     AL++ G     +         D D +  + L               +PD    
Sbjct: 31  SGSQACKALKEEGIYTILVNSNPATIQTDTDMADKVYLEPLHPTIVEKIIEKERPDAILP 90

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G  G +  +    + IL+   I    S I    ++ D+    + ++    PV     
Sbjct: 91  TMGGQTGLNLALELHRRGILDKYGIKLLGSNIRTIEIAEDRELFAEAMAEINEPVTKCKA 150

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           VN     ++    I  P +++P       G  +    + +     +   ++  +Q+LI++
Sbjct: 151 VNSVDEAVEFAEEIGYPVIVRPAFTLGGTGGGIAHNKEELIDITSKGLKYSIINQVLIDE 210

Query: 171 YVDG-IELTCGVMGD-ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            V G  E    VM D     +    +   D            S  V P + +P + Y+++
Sbjct: 211 SVLGWKEFELEVMRDRKDTCIIVCGMENIDPMGIHT----GESIVVSPIQTLPDEFYQKL 266

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +  A    + +G  G     F  +    +   +E+N 
Sbjct: 267 RNAAIKIIRHLGIEGGCNIQFAVNKEMTEYRVIEVNP 303


>gi|307706740|ref|ZP_07643545.1| carbamoyl-phosphate synthase, large subunit [Streptococcus mitis
           SK321]
 gi|307617825|gb|EFN96987.1| carbamoyl-phosphate synthase, large subunit [Streptococcus mitis
           SK321]
          Length = 1058

 Score = 74.8 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 26/228 (11%), Positives = 77/228 (33%), Gaps = 19/228 (8%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYV 129
           L    +    + +     + D+   +Q +    +P  P            +   I  P +
Sbjct: 646 LAKAGVTILGTQVADLDRAEDRDLFEQALKDLDIPQPPGQTATNEEEAVLAARKIGFPVL 705

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS--- 186
           ++P        + +++ ++ +   +  +   +    +L++ Y+ G E     + D     
Sbjct: 706 VRPSYVLGGRAMEIVENEEDLRSYMRTAVKASPDHPVLVDSYIVGQECEVDAISDGENVL 765

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISR 245
           +      + ++  +S        +S  V P + +   + + +          + C G+  
Sbjct: 766 IPGIMEHIERAGVHS-------GDSMAVYPPQTLSQKVQETIADYTKRLAIGLNCLGMMN 818

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
             F+      KV+ +E+N +   T     P ++        ++   ++
Sbjct: 819 IQFVI--KDEKVYVIEVNPRASRT----VPFLSKVTNIPMAQVATKLI 860



 Score = 71.7 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 54/302 (17%), Positives = 115/302 (38%), Gaps = 37/302 (12%)

Query: 20  KACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNVL 58
           +AC S L++ G++V  ++        D+ +                +L   +PD     L
Sbjct: 32  QACLS-LKEEGYEVVLVNSNPATIMTDKEIADKVYIEPITLEFVTRILRKERPDALLPTL 90

Query: 59  HGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
            G  G +  ++     IL+ L +    + + A   + D+   KQ++     P+  S +VN
Sbjct: 91  GGQTGLNMAMELSKNGILDELGVELLGTKLSAIDQAEDRDLFKQLMEELNQPIPESEIVN 150

Query: 115 --RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                +     I  P +++P       G  +   ++ +          +   Q LIE+ +
Sbjct: 151 TVEEAVAFAATIGYPVIVRPAFTLGGTGGGMCANEEELREIAENGLKLSPVTQCLIERSI 210

Query: 173 DG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRL 230
            G  E+   VM D++ +   + V   + +   +   + +S    PA+ +     + ++  
Sbjct: 211 AGFKEIEYEVMRDSADNA--LVVCNMENFD-PVGIHTGDSIVFAPAQTMSDYENQMLRDA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    +A+   G        DP S K + +E+N  P ++  S     +   GY   +L  
Sbjct: 268 SLSIIRALKIEGGCNVQLALDPHSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325


>gi|241765724|ref|ZP_04763671.1| acetyl-CoA carboxylase, biotin carboxylase [Acidovorax delafieldii
           2AN]
 gi|241364411|gb|EER59529.1| acetyl-CoA carboxylase, biotin carboxylase [Acidovorax delafieldii
           2AN]
          Length = 449

 Score = 74.8 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 37/226 (16%), Positives = 82/226 (36%), Gaps = 29/226 (12%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+      +E     +         +  DK+ +KQ +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAERVEKSGFQFIGPTPENIRMMGDKVSAKQAMIRAGVPCVPGSDG 136

Query: 111 ------ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSW 160
                 + + R        +  P +IK   GG   G+ V+  + ++   +     ++ + 
Sbjct: 137 ELPDDPVQIRR----IAKAVGYPVIIKAAGGGGGRGMRVVHTEAALVNAVQMTKAEAGAA 192

Query: 161 NHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK- 218
                + +E+++ +   +   V+ D   +   +            K          PA  
Sbjct: 193 FGNPAVYMEKFLQNPRHIEIQVLADKFRNAVYLGERDCSMQRRHQK-----VIEEAPAPG 247

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           IP  + +++      A + IG RG    +FL+   + + +++E+N 
Sbjct: 248 IPRKLIEKIGERCVAACKKIGYRGAGTFEFLY--ENGEFYFIEMNT 291


>gi|170728448|ref|YP_001762474.1| carbamoyl-phosphate synthase L chain ATP-binding [Shewanella woodyi
            ATCC 51908]
 gi|169813795|gb|ACA88379.1| Carbamoyl-phosphate synthase L chain ATP-binding [Shewanella woodyi
            ATCC 51908]
          Length = 1518

 Score = 74.8 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 39/226 (17%), Positives = 90/226 (39%), Gaps = 28/226 (12%)

Query: 57   VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
             LH   G   E     A+     + +    + +     +K  + +   + GVPV P    
Sbjct: 1018 ALHPGIGFLSESPQFAALCVNNGVNFVGPSVHSMTTMGNKSNAIKTSQANGVPVVPGSHG 1077

Query: 111  -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI-----PLDLLQSSSWNHGD 164
             +      ++  + I  P ++K ++GG   GI V+++   +           ++++ +GD
Sbjct: 1078 ILTNAEQAVNVANEIGYPVLLKAVQGGGGKGIQVVERPGDMISLFQQTSTEAAAAFGNGD 1137

Query: 165  QLLIEQYVD-GIELTCGVMGD-----ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
              L E+YV     +   ++ D       L + + +V +++    E       ST      
Sbjct: 1138 LYL-EKYVTSLRHIEVQLLRDQFGNTKVLGIRDCSVQRNNQKVVEE----SGSTM----- 1187

Query: 219  IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +P ++ ++V         A    G    +F+++  + +V+++E+N 
Sbjct: 1188 LPEELKEKVLEYTRALGNATDYMGAGTVEFIYNLDANEVYFMEMNT 1233


>gi|71910276|ref|YP_281826.1| cytoplasmic protein [Streptococcus pyogenes MGAS5005]
 gi|209559027|ref|YP_002285499.1| hypothetical protein Spy49_0474 [Streptococcus pyogenes NZ131]
 gi|71853058|gb|AAZ51081.1| hypothetical cytosolic protein [Streptococcus pyogenes MGAS5005]
 gi|209540228|gb|ACI60804.1| hypothetical protein Spy49_0474 [Streptococcus pyogenes NZ131]
          Length = 415

 Score = 74.8 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 34/219 (15%), Positives = 75/219 (34%), Gaps = 37/219 (16%)

Query: 93  KMRSKQVVSSCGVPVCPSILVNRF-TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
           K R + V  + G+ +    ++N+F   +       P ++KP    +S+G+  +     + 
Sbjct: 105 KDRMRMVCEAGGLKMPKYKIINQFSDTNKIINWKYPLIVKPTSFLASIGVKKVYNFSELQ 164

Query: 152 LDL-----------------LQSSSWNHGDQLLIEQYVDGIELTC-GVMGDASLDVTEIA 193
             +                      +N   ++L+E+++DG E +   V+ +       I 
Sbjct: 165 QAVSQMLNVKFPVYIASGVYELGELYNLEPRVLVEEFIDGEEYSLESVVRNGIYTPLGIT 224

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR-SDFLFDP 252
                    + K       H+ P+ +  +    V   A   HQ +    I+  ++F    
Sbjct: 225 KK-----IVDEKLFMDEIGHIFPSNLNKEEKSRVYSWAEKLHQILQLNHITTHTEFRI-G 278

Query: 253 LSRKVFWLEINV------QPGMTPVSIFPEMAAYAGYSF 285
            +  +  +EI         P +   S   +     G+ F
Sbjct: 279 RNGDIILIEIGARIGGDCIPNLMKNSFIVK-----GFDF 312


>gi|39996378|ref|NP_952329.1| carbamoyl-phosphate synthase large subunit [Geobacter
           sulfurreducens PCA]
 gi|39983258|gb|AAR34652.1| carbamoyl-phosphate synthase, large subunit [Geobacter
           sulfurreducens PCA]
 gi|298505388|gb|ADI84111.1| carbamoyl-phosphate synthase, large subunit lipoprotein,
           glutamine-dependent [Geobacter sulfurreducens KN400]
          Length = 1081

 Score = 74.8 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 53/278 (19%), Positives = 102/278 (36%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ GF+V  +         D D              +  ++   +PD    
Sbjct: 29  SGTQACKALKEEGFEVVLLNSNPATIMTDPDFADRTYVEPVTPEVLAKIIEKERPDAVLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G    +  V       LE   +    + + A   + D+   K+ +   G+ V  S L
Sbjct: 89  TLGGQTALNTAVAVAENGTLEKFGVELIGAKLPAIKKAEDRTLFKEAMEKIGLSVPRSGL 148

Query: 113 VNRF--TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            + +   M     +  P +I+P       G  +    +      +     +  D++L+E+
Sbjct: 149 AHNYSEAMTVVKTVGFPAIIRPSFTLGGTGGGIAYNMEEYEKMAMAGIDASPTDEILVEE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            V G  E    VM D + +V  I   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SVIGWKEYELEVMRDTADNVVIICSIEN----FDPMGVHTGDSITVAPAQTLTDKEYQIL 264

Query: 228 QRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
           +  A    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RDAALKIIREIGVDTGGSNIQFGINPRNGRLVVIEMNP 302



 Score = 58.2 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 38/262 (14%), Positives = 97/262 (37%), Gaps = 27/262 (10%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ------ 69
           AL + G++   +         D D S  L    L  +   +++     E  +VQ      
Sbjct: 597 ALAEDGYETIMVNCNPETVSTDYDTSDRLYFEPLTYEDVLSIVELEKPEGVIVQFGGQTP 656

Query: 70  ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHL 123
                 LE   +P   +   A   + D+ R ++++    +    +     F    +  + 
Sbjct: 657 LKLAVALEKAGVPIIGTSPDAIDRAEDRERFQEMLHKLNLLQPENGTARSFEEAEEVANR 716

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVM 182
           I  P V++P        + ++   +++   +  +   +    +LI++++D  IE+    +
Sbjct: 717 IGYPVVVRPSYVLGGRAMEIVYDVENLRRYMTTAVQASPEHPILIDKFLDKAIEIDVDAL 776

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D +  V    +   +       +S  ++  + P  I   + +E++R   +    +  +G
Sbjct: 777 CDGTDVVIGGIMEHIEEAGI---HSGDSACCLPPHSISQALVEEIRRQTTVMALELNVKG 833

Query: 243 ISRSDFLFDPLSRKVFWLEINV 264
           +   +  +      ++ LE+N 
Sbjct: 834 L--MNVQYAIKDGTIYILEVNP 853


>gi|296454922|ref|YP_003662066.1| carbamoyl-phosphate synthase L chain, ATP-binding protein
           [Bifidobacterium longum subsp. longum JDM301]
 gi|296184354|gb|ADH01236.1| Carbamoyl-phosphate synthase L chain, ATP-binding protein
           [Bifidobacterium longum subsp. longum JDM301]
          Length = 654

 Score = 74.8 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 42/230 (18%), Positives = 80/230 (34%), Gaps = 13/230 (5%)

Query: 42  VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +  +L     D      +G   E       +E     +      A     DK+ +++V  
Sbjct: 69  LIDILRKTGADAVHPG-YGFLSEVPSFAQKVEDAGAIWVGPHHTALVDLGDKITARRVAL 127

Query: 102 SCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
              VP  P     +   R  +D  H    P ++K   GG   GI V+  D+ +    +  
Sbjct: 128 RAKVPPVPGLSEPVTDVRTLLDFAHTHGYPIMMKRTDGGGGHGITVVHDDEELRRFYMNH 187

Query: 158 SSWNHGD--QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHV 214
            +   GD  +  IE++VD    +      D+  + T  +           K         
Sbjct: 188 DALQGGDLKEYFIEKFVDKARHVETQSGRDSHGNFTVYSTRDCSLQRRNQK----LVEEA 243

Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
               +  +I   ++  +      +G  G+   +F+  P + KV++LE+N 
Sbjct: 244 PAPFLSEEIVSTLEEYSRRLFTTVGYVGLGTCEFMVTP-NGKVYFLEVNP 292


>gi|294795153|ref|ZP_06760287.1| carbamoyl-phosphate synthase, large subunit [Veillonella sp.
           3_1_44]
 gi|294453945|gb|EFG22320.1| carbamoyl-phosphate synthase, large subunit [Veillonella sp.
           3_1_44]
          Length = 1066

 Score = 74.8 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 39/262 (14%), Positives = 100/262 (38%), Gaps = 28/262 (10%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH--------GNFGEDGL 67
           AL  AG++   I         D D S  L    L  D    +++          FG    
Sbjct: 578 ALRKAGYQSIMINNNPETVSTDFDISDSLYFEPLTVDDVMEIINKEQPAGVIAQFGGQTA 637

Query: 68  V--QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTMDSQHL 123
           +     L    +    + + +  ++ D+ R  ++++  G+P     LV  +    ++   
Sbjct: 638 INLAGPLAERGVKILGTSVDSIDMAEDRERFDELLAKLGIPRPVGALVTSDEEAQEAAKK 697

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           +  P +++P        + ++  D+ + + + ++   +    +LI++Y+ G+E+    + 
Sbjct: 698 LKYPLIVRPSYVLGGRAMEIVYNDKELDVYMKEAVVASKEHPVLIDRYMVGMEVEVDAIS 757

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRG 242
           D     T++ +P            S +S  V PA+ +  ++  ++          +  +G
Sbjct: 758 DG----TDVCIPGIMEQIERAGVHSGDSMAVYPAQHLSQELIDQIVDYTRRIAVGLNVKG 813

Query: 243 ISRSDFLFDPLSRKVFWLEINV 264
           +    ++      ++  +E+N 
Sbjct: 814 VLNIQYIV--ADGELNVIEVNP 833



 Score = 60.9 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 48/286 (16%), Positives = 99/286 (34%), Gaps = 33/286 (11%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI---------DVD------------RSVGLV 45
           G ++E + +   G     +L + G+KV  +         D D              V  V
Sbjct: 19  GQAAEFDYA---GTQACRSLREEGYKVVLVNSNPATIMTDTDIADRVYVEPISLEFVTEV 75

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   +P      L G  G +  VQ     +LE   +    + + A   + D+   K+ + 
Sbjct: 76  IKKERPWGLLATLGGQVGLNMAVQLSEAGVLEEYGVKLLGTTLEAIKQAEDRELFKEAMK 135

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
               PV  S + N     +   + I  P +I+P       G  +   +  +     +   
Sbjct: 136 EINQPVPESDIFNDLEEAVAFANRIGYPIIIRPAYTLGGTGGGIAHNEDEMYEITRRGLK 195

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   Q+L E+ V G  E+   VM D++ +   I V   +       ++  +        
Sbjct: 196 LSPIHQILAERSVAGWKEIEYEVMRDSADN--CIIVCNMENIDPVGVHTGDSIVVAPSQT 253

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +    Y+ ++  +    + +   G     +  +P S +   +E+N 
Sbjct: 254 LNDIQYQMLRTASVEIIRYLKIEGGCNVQYALNPNSNEYIVIEVNP 299


>gi|251823980|ref|NP_001156418.1| pyruvate carboxylase, mitochondrial isoform 1 [Mus musculus]
          Length = 1179

 Score = 74.8 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 31/233 (13%), Positives = 75/233 (32%), Gaps = 17/233 (7%)

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
            +  V      D      +G   E        +   + +            DK+ ++ + 
Sbjct: 102 DIIKVAKENGVDAVHPG-YGFLSERADFAQACQDAGVRFIGPSPEVVRKMGDKVEARAIA 160

Query: 101 SSCGVPVCPSILVNRFTMDSQHLI----SPPYVIKPLKGGSSLGIIVIKKDQSIPL---- 152
            + GVPV P       ++   H        P + K   GG   G+ V+   + +      
Sbjct: 161 IAAGVPVVPGTDSPISSLHEAHEFSNTYGFPIIFKAAYGGGGRGMRVVHSYEELEENYTR 220

Query: 153 DLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
              ++ +      L +E++++    +   ++GD   ++  +            K      
Sbjct: 221 AYSEALAAFGNGALFVEKFIEKPRHIEVQILGDQYGNILHLYERDCSIQRRHQK-----V 275

Query: 212 THVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
             + PA  +   +   +   +    + +G       +FL D   +  +++E+N
Sbjct: 276 VEIAPATHLDPQLRSRLTSDSVKLAKQVGYENAGTVEFLVDKHGKH-YFIEVN 327


>gi|237749094|ref|ZP_04579574.1| biotin carboxylase [Oxalobacter formigenes OXCC13]
 gi|229380456|gb|EEO30547.1| biotin carboxylase [Oxalobacter formigenes OXCC13]
          Length = 453

 Score = 74.8 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 80/221 (36%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +      +  +  DK+ +KQ +   G+P  P    
Sbjct: 77  AIHPGYGFLSENADFAERVEKSGFVFIGPRSESIRVMGDKVSAKQTMIKAGIPCVPGSEG 136

Query: 112 LVNRFTMD---SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
            +     +   +   I  P +IK   GG   G+ V+  + S+   +     ++ +     
Sbjct: 137 ALPDDPQEIIATARRIGFPVIIKAAGGGGGRGMRVVHTEASLLNAVTMTKTEAGAAFGNP 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           ++ +E++++    +   V+ D   +   +            K             IP  +
Sbjct: 197 EVYMEKFLENPRHIEIQVIADDHKNAIWLGERDCSMQRRHQK----VIEEAPAPDIPRRL 252

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              +      A + IG RG    +FL+   + + +++E+N 
Sbjct: 253 IDRIGERCADACKKIGYRGAGTFEFLY--ENGEFYFIEMNT 291


>gi|161527781|ref|YP_001581607.1| carbamoyl-phosphate synthase L chain ATP-binding [Nitrosopumilus
           maritimus SCM1]
 gi|160339082|gb|ABX12169.1| Carbamoyl-phosphate synthase L chain ATP-binding [Nitrosopumilus
           maritimus SCM1]
          Length = 495

 Score = 74.8 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 34/219 (15%), Positives = 77/219 (35%), Gaps = 17/219 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     + E  +I +      +  L  DKM  K  +    VP  P    
Sbjct: 77  AVHPGYGFLSENDDFARLCEKNKINFIGPSADSMNLCGDKMECKAAMLKAQVPTVPGSPG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
            +          + I  P ++K + GG   GI ++  DQ +         +S +      
Sbjct: 137 LVDTAEEAEKIANEIGYPVLLKSVYGGGGRGIRLVTTDQELREGFETVTSESIAAVGKSA 196

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           +++E++++    +   +  D   +   +   +        K             +     
Sbjct: 197 IIVEKFLEKTRHIEYQMCRDHHGNAVHLFERECSIQRRNQK----LIEQTPSPVVDEAKR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
           +E+  L   A +A+    +  ++F     + + +++EIN
Sbjct: 253 EEIGELVVKAAEAVNYTNLGTAEF-LRADNGEFYFIEIN 290


>gi|149377181|ref|ZP_01894929.1| 3-methylcrotonyl-CoA carboxylase alpha chain [Marinobacter algicola
           DG893]
 gi|149358480|gb|EDM46954.1| 3-methylcrotonyl-CoA carboxylase alpha chain [Marinobacter algicola
           DG893]
          Length = 667

 Score = 74.8 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 81/221 (36%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       E   I +      A A    K  +K ++ + GVP+ P    
Sbjct: 77  AVHPGYGFLSENTQFAEACEANNIVFIGPPSSAIAAMGSKSAAKAIMETAGVPLVPGYHG 136

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
           +  + +           P ++K + GG   G+ V+++ +     L  +   +        
Sbjct: 137 DDQSPETLRKEAEKCGFPLLLKAVAGGGGKGMRVVERMEDFDDALAAAKRESKNAFGNPD 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           +LIE+Y+     +   V  D S     +A          ++          PA  +  + 
Sbjct: 197 MLIERYLTQPRHVEIQVFCDKSGKGVYLAE-----RDCSVQRRHQKVLEEAPAPGLSDET 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            K +   A  A QAI   G    +FL+D +    F++E+N 
Sbjct: 252 RKSMGEAAVKAAQAIDYVGAGTVEFLYD-VDGSFFFMEMNT 291


>gi|251823978|ref|NP_032823.2| pyruvate carboxylase, mitochondrial isoform 2 [Mus musculus]
 gi|148701106|gb|EDL33053.1| pyruvate carboxylase [Mus musculus]
          Length = 1178

 Score = 74.8 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 31/233 (13%), Positives = 75/233 (32%), Gaps = 17/233 (7%)

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
            +  V      D      +G   E        +   + +            DK+ ++ + 
Sbjct: 101 DIIKVAKENGVDAVHPG-YGFLSERADFAQACQDAGVRFIGPSPEVVRKMGDKVEARAIA 159

Query: 101 SSCGVPVCPSILVNRFTMDSQHLI----SPPYVIKPLKGGSSLGIIVIKKDQSIPL---- 152
            + GVPV P       ++   H        P + K   GG   G+ V+   + +      
Sbjct: 160 IAAGVPVVPGTDSPISSLHEAHEFSNTYGFPIIFKAAYGGGGRGMRVVHSYEELEENYTR 219

Query: 153 DLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
              ++ +      L +E++++    +   ++GD   ++  +            K      
Sbjct: 220 AYSEALAAFGNGALFVEKFIEKPRHIEVQILGDQYGNILHLYERDCSIQRRHQK-----V 274

Query: 212 THVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
             + PA  +   +   +   +    + +G       +FL D   +  +++E+N
Sbjct: 275 VEIAPATHLDPQLRSRLTSDSVKLAKQVGYENAGTVEFLVDKHGKH-YFIEVN 326


>gi|118594162|ref|ZP_01551509.1| acetyl-CoA carboxylase [Methylophilales bacterium HTCC2181]
 gi|118439940|gb|EAV46567.1| acetyl-CoA carboxylase [Methylophilales bacterium HTCC2181]
          Length = 448

 Score = 74.8 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 85/222 (38%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---S 110
            +H  +G   E+      +E     +         L  DK+ +K  +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAERVEKSGFTFIGPRADTIRLMGDKVSAKVAMKKAGVPCVPGSDG 136

Query: 111 ILVNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
            L +  +   +    I  P ++K   GG   G+ V+  + +I   +     ++ +     
Sbjct: 137 ALSDDPSQIREIARKIGYPVIVKAAGGGGGRGMRVVHTEAAIINSVAMTKAEAGAAFGNP 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+Y++    +   V+ D   +   +           L+  +       PA  IP  
Sbjct: 197 TVYMEKYLETPRHVEVQVLSDQHGNAIHLW-----DRDCSLQRRNQKVVEEAPAPGIPQR 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +++ +    A + IG RG    +FL+   + + F++E+N 
Sbjct: 252 LREKMGQRCADACKKIGYRGAGTFEFLY--ENEEFFFIEMNT 291


>gi|117618829|ref|YP_857836.1| acetyl-CoA carboxylase, biotin carboxylase [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
 gi|117560236|gb|ABK37184.1| acetyl-CoA carboxylase, biotin carboxylase [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
          Length = 446

 Score = 74.8 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 79/222 (35%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+     ++E     +         L  DK+ + + +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAEVVEKSGFIFIGPRAETIRLMGDKVSAIEAMKKAGVPCVPGSDG 136

Query: 112 ---LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGD 164
                 +        I  P +IK   GG   G+ V++ +  +   +     ++  +   D
Sbjct: 137 PVDSDAKHNAAIAKRIGYPVIIKAAGGGGGRGMRVVRSEAELSAAIALTKSEAGQFFKND 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+Y++    +   V+ D   +   +            K          PA  I  +
Sbjct: 197 MVYMEKYLENPRHIEIQVLADGQGNALYLGERDCSMQRRHQK-----VVEEAPAPGITEE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + K +      A   IG RG    +FL+   + + +++E+N 
Sbjct: 252 MRKFIGERCVRACIEIGYRGAGTFEFLY--ENGEFYFIEMNT 291


>gi|161830399|ref|YP_001597549.1| acetyl-CoA carboxylase, biotin carboxylase [Coxiella burnetii RSA
           331]
 gi|161762266|gb|ABX77908.1| acetyl-CoA carboxylase, biotin carboxylase [Coxiella burnetii RSA
           331]
          Length = 448

 Score = 74.8 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 34/221 (15%), Positives = 77/221 (34%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---S 110
            +H  +G   E+      +E     +      A  L  +K+ + + +   G+P  P    
Sbjct: 77  AIHPGYGFLAENPNFCEQVEKSGFVFIGPSHEAIHLMGNKVSAIKAMKEAGLPCIPGSDG 136

Query: 111 ILVNRFTMD--SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGD 164
            L      +      I  P +IK   GG   G+ V+ ++  +   +     ++++    D
Sbjct: 137 ALGKDGDANLLIAEQIGYPILIKAAGGGGGRGMRVVHREAELLNAIAMTRTEAAAAFGTD 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           ++ +E++++    +   V+GD       +            K             I    
Sbjct: 197 KVYMEKFLENPRHIEIQVLGDGQGHAIHLGERDCSMQRRHQK----VIEEAPAPDITPKQ 252

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              +      A  A+  RG    +FL+   + + +++E+N 
Sbjct: 253 RATIGERCVQACIAMNYRGAGTFEFLY--ENGEFYFIEMNT 291


>gi|74186338|dbj|BAE42943.1| unnamed protein product [Mus musculus]
          Length = 1179

 Score = 74.8 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 31/233 (13%), Positives = 75/233 (32%), Gaps = 17/233 (7%)

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
            +  V      D      +G   E        +   + +            DK+ ++ + 
Sbjct: 102 DIIKVAKENGVDAVHPG-YGFLSERADFAQACQDAGVRFIGPSPEVVRKMGDKVEARAIA 160

Query: 101 SSCGVPVCPSILVNRFTMDSQHLI----SPPYVIKPLKGGSSLGIIVIKKDQSIPL---- 152
            + GVPV P       ++   H        P + K   GG   G+ V+   + +      
Sbjct: 161 IAAGVPVVPGTDSPISSLHEAHEFSNTYGFPIIFKAAYGGGGRGMRVVHSYEELEENYTR 220

Query: 153 DLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
              ++ +      L +E++++    +   ++GD   ++  +            K      
Sbjct: 221 AYSEALAAFGNGALFVEKFIEKPRHIEVQILGDQYGNILHLYERDCSIQRRHQK-----V 275

Query: 212 THVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
             + PA  +   +   +   +    + +G       +FL D   +  +++E+N
Sbjct: 276 VEIAPATHLDPQLRSRLTSDSVKLAKQVGYENAGTVEFLVDKHGKH-YFIEVN 327


>gi|332557940|ref|ZP_08412262.1| 3-methylcrotonoyl-CoA carboxylase, alpha subunit [Rhodobacter
           sphaeroides WS8N]
 gi|332275652|gb|EGJ20967.1| 3-methylcrotonoyl-CoA carboxylase, alpha subunit [Rhodobacter
           sphaeroides WS8N]
          Length = 646

 Score = 74.8 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 44/227 (19%), Positives = 86/227 (37%), Gaps = 27/227 (11%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      +E   + +      A      K  +K +++  GVPV P    
Sbjct: 77  AIHPGYGFLSENPEFVEAVEAAGLVFIGPSAAAIRAMGLKDAAKALMAEAGVPVVPGY-- 134

Query: 114 NRFTMDSQHL------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----G 163
           +    + +HL      I  P +IK + GG   G+  +++ +     L  + +        
Sbjct: 135 HGADQEPEHLALMAQDIGYPVLIKAVAGGGGKGMRRVERAEEFAAALASARAEARTAFGN 194

Query: 164 DQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPL 221
           + +LIE+++D    +   V GD +  V              L+          PA  +  
Sbjct: 195 EAVLIEKWIDCPRHIELQVFGDGTDAVHLYE------RDCSLQRRHQKVIEEAPAPGMTP 248

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR----KVFWLEINV 264
            +   +   A  A +AIG RG    +F+ D  +     + +++E+N 
Sbjct: 249 AMRAAMGEAAVRAARAIGYRGAGTVEFIVDGSAGLSPDRFWFMEMNT 295


>gi|328767721|gb|EGF77770.1| hypothetical protein BATDEDRAFT_35961 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 715

 Score = 74.8 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 43/220 (19%), Positives = 78/220 (35%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      L+ +   +      A A   DK++SK +     V   P    
Sbjct: 114 AVHPGYGFLSENSQFVHALDEIGAVFIGPNERAMAAMGDKIQSKIIAKEAKVTTIPGFNG 173

Query: 112 LVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
           +V      +   + I  P +IK   GG   G+ +   D+        SSS         +
Sbjct: 174 VVENVDHAVKIANEIGYPVMIKASAGGGGKGMRIAWNDKEAREAFKISSSEALSSFGDSR 233

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           LL+E+++ D   +   ++GD   +   +   +        K             I +   
Sbjct: 234 LLVEKFIEDPRHIEIQLIGDQHGNTIYLPERECSIQRRNQK----VIEEAPSVHIDIATR 289

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K +   A    + +G       +FL DP  R  ++LE+N 
Sbjct: 290 KAMGEQAVALAKNVGYYSAGTCEFLVDPK-RNFYFLEMNT 328


>gi|331266652|ref|YP_004326282.1| carbamoyl-phosphate synthase, large subunit [Streptococcus oralis
           Uo5]
 gi|326683324|emb|CBZ00942.1| carbamoyl-phosphate synthase, large subunit [Streptococcus oralis
           Uo5]
          Length = 1058

 Score = 74.8 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 26/228 (11%), Positives = 77/228 (33%), Gaps = 19/228 (8%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYV 129
           L    +    + +     + D+   +Q +    +P  P            +   I  P +
Sbjct: 646 LAKAGVTILGTQVADLDRAEDRDLFEQALKDLDIPQPPGQTATNEEEAVLAARKIGFPVL 705

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS--- 186
           ++P        + +++ ++ +   +  +   +    +L++ Y+ G E     + D     
Sbjct: 706 VRPSYVLGGRAMEIVENEEDLRSYMRTAVKASPDHPVLVDSYIVGQECEVDAISDGENVL 765

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISR 245
           +      + ++  +S        +S  V P + +   + + +          + C G+  
Sbjct: 766 IPGIMEHIERAGVHS-------GDSMAVYPPQTLSQKVQETIADYTKRLAIGLNCLGMMN 818

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
             F+      KV+ +E+N +   T     P ++        ++   ++
Sbjct: 819 IQFVI--KDEKVYVIEVNPRASRT----VPFLSKVTNIPMAQVATKLI 860



 Score = 69.0 bits (168), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 54/302 (17%), Positives = 115/302 (38%), Gaps = 37/302 (12%)

Query: 20  KACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNVL 58
           +AC S L++ G++V  ++        D+ +                +L   +PD     L
Sbjct: 32  QACLS-LKEEGYEVVLVNSNPATIMTDKEIADKVYIEPITLEFVTRILRKERPDALLPTL 90

Query: 59  HGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
            G  G +  ++     IL+ L +    + + A   + D+   KQ++     P+  S +VN
Sbjct: 91  GGQTGLNMAMELSKNGILDELGVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIVN 150

Query: 115 --RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                +     I  P +++P       G  +   ++ +          +   Q LIE+ +
Sbjct: 151 TVEEAVAFAVSIGYPVIVRPAFTLGGTGGGMCANEEELREIAENGLKLSPVTQCLIERSI 210

Query: 173 DG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRL 230
            G  E+   VM D++ +   + V   + +   +   + +S    PA+ +     + ++  
Sbjct: 211 AGFKEIEYEVMRDSADNA--LVVCNMENFD-PVGIHTGDSIVFAPAQTMSDYENQMLRDA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    +A+   G        DP S K + +E+N  P ++  S     +   GY   +L  
Sbjct: 268 SLSIIRALKIEGGCNVQLALDPHSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325


>gi|322372453|ref|ZP_08046989.1| carbamoyl-phosphate synthase, large subunit [Streptococcus sp.
           C150]
 gi|321277495|gb|EFX54564.1| carbamoyl-phosphate synthase, large subunit [Streptococcus sp.
           C150]
          Length = 1059

 Score = 74.8 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 27/217 (12%), Positives = 73/217 (33%), Gaps = 20/217 (9%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYV 129
           L    +    + +     + D+   +Q +    +P  P           ++   I  P +
Sbjct: 646 LSKAGVKILGTQVADLDRAEDRDLFEQALIDLNIPQPPGQTATNEEEAVEAARKIGFPVL 705

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS--- 186
           ++P        + +++ +  +   +  +   +    +L++ Y+ G E     + D     
Sbjct: 706 VRPSYVLGGRAMEIVENEDDLRSYMRTAVKASPDHPVLVDSYIIGRECEVDAISDGKDVL 765

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISR 245
           +      + ++  +S        +S  V P + +   I + +          + C G+  
Sbjct: 766 IPGIMEHIERAGVHS-------GDSMAVYPPQTLSKKIQETIADYTKRLAIGLNCIGMMN 818

Query: 246 SDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277
             F+       V+ +E+N       P ++ V+  P  
Sbjct: 819 IQFVI--KGETVYVIEVNPRASRTVPFLSKVTDIPMA 853



 Score = 73.2 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 50/296 (16%), Positives = 107/296 (36%), Gaps = 34/296 (11%)

Query: 25  ALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNVLHGNFG 63
           AL++ G+ V  ++        D+ +                +L   +PD     L G  G
Sbjct: 36  ALKEEGYSVVLVNSNPATIMTDKEIADKVYIEPITLEFVTRILRKERPDALLPTLGGQTG 95

Query: 64  EDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFT 117
            +  ++     IL+ L +    + + A   + D+   KQ++     P+  S +VN     
Sbjct: 96  LNMAMELSKAGILDELGVELLGTKLSAIDQAEDRDLFKQLMEDLHQPIPESEIVNTVEEA 155

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IE 176
           +     I  P +++P       G  +   ++ +          +   Q LIE+ + G  E
Sbjct: 156 VAFASKIGYPVIVRPAFTLGGTGGGMCANEEELREIAENGLKLSPVTQCLIERSIAGFKE 215

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +   VM DA+ +   + V   + +     ++  +        +     + ++  +    +
Sbjct: 216 IEYEVMRDAADNA--LVVCNMENFDPVGIHTGDSIVFAPTQTLSDIENQMLRDASLKIIR 273

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           A+   G        DP S K + +E+N  P ++  S     +   GY   +L   +
Sbjct: 274 ALKIEGGCNVQLALDPNSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAKI 325


>gi|270157182|ref|ZP_06185839.1| methylcrotonoyl-CoA carboxylase subunit alpha [Legionella
           longbeachae D-4968]
 gi|289164415|ref|YP_003454553.1| acyl CoA carboxylase subunit alpha subunit [Legionella longbeachae
           NSW150]
 gi|269989207|gb|EEZ95461.1| methylcrotonoyl-CoA carboxylase subunit alpha [Legionella
           longbeachae D-4968]
 gi|288857588|emb|CBJ11426.1| acyl CoA carboxylase subunit alpha subunit [Legionella longbeachae
           NSW150]
          Length = 654

 Score = 74.8 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 74/220 (33%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       +   I +    I A      K  +KQ++    VP+ P    
Sbjct: 77  AIHPGYGFLSENPEFARACDEANIIFIGPSIEAMEAMASKQLAKQLLEKTTVPLTPGYHG 136

Query: 114 NRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
           +    +        I  P +IK   GG   G+  +  +    + L  +   +      D 
Sbjct: 137 SEQAEEKLLAQAQKIGFPVLIKAANGGGGKGMRTVYHESEFSMALAGAKRESMASFADDT 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           ++IE+ V     +   +M D   +V  +            K             +   + 
Sbjct: 197 MIIEKLVLHPRHVELQIMADNHGNVVHLFERDCSIQRRHQKII----EEAPAPNLSASLR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +   A    ++I  RG    +FL D    + +++E+N 
Sbjct: 253 QRLAEAACEVARSINYRGAGTVEFLVDGEE-QFYFMEMNT 291


>gi|269797629|ref|YP_003311529.1| carbamoyl-phosphate synthase, large subunit [Veillonella parvula
           DSM 2008]
 gi|269094258|gb|ACZ24249.1| carbamoyl-phosphate synthase, large subunit [Veillonella parvula
           DSM 2008]
          Length = 1066

 Score = 74.8 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 39/262 (14%), Positives = 100/262 (38%), Gaps = 28/262 (10%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH--------GNFGEDGL 67
           AL  AG++   I         D D S  L    L  D    +++          FG    
Sbjct: 578 ALRKAGYQSIMINNNPETVSTDFDISDSLYFEPLTVDDVMEIINKEQPAGVIAQFGGQTA 637

Query: 68  V--QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTMDSQHL 123
           +     L    +    + + +  ++ D+ R  ++++  G+P     LV  +    ++   
Sbjct: 638 INLAGPLAERGVKILGTSVDSIDMAEDRERFDELLAKLGIPRPVGALVTSDEEAQEAAKK 697

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           +  P +++P        + ++  D+ + + + ++   +    +LI++Y+ G+E+    + 
Sbjct: 698 LKYPLIVRPSYVLGGRAMEIVYNDKELDVYMKEAVVASKEHPVLIDRYMVGMEVEVDAIS 757

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRG 242
           D     T++ +P            S +S  V PA+ +  ++  ++          +  +G
Sbjct: 758 DG----TDVCIPGIMEQIERAGVHSGDSMAVYPAQHLSQELIDQIVDYTRRIAVGLNVKG 813

Query: 243 ISRSDFLFDPLSRKVFWLEINV 264
           +    ++      ++  +E+N 
Sbjct: 814 VLNIQYIV--ADGELNVIEVNP 833



 Score = 60.5 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 48/286 (16%), Positives = 99/286 (34%), Gaps = 33/286 (11%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI---------DVD------------RSVGLV 45
           G ++E + +   G     +L + G+KV  +         D D              V  V
Sbjct: 19  GQAAEFDYA---GTQACRSLREEGYKVVLVNSNPATIMTDTDIADRVYVEPISLEFVTEV 75

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   +P      L G  G +  VQ     +LE   +    + + A   + D+   K+ + 
Sbjct: 76  IKKERPWGLLATLGGQVGLNMAVQLSEAGVLEEYGVKLLGTTLEAIKQAEDRELFKEAMK 135

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
               PV  S + N     +   + I  P +I+P       G  +   +  +     +   
Sbjct: 136 EINQPVPESDIFNDLEEAVAFANRIGYPIIIRPAYTLGGTGGGIAHNEDEMYEITRRGLK 195

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   Q+L E+ V G  E+   VM D++ +   I V   +       ++  +        
Sbjct: 196 LSPIHQILAERSVAGWKEIEYEVMRDSADN--CIIVCNMENIDPVGVHTGDSIVVAPSQT 253

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +    Y+ ++  +    + +   G     +  +P S +   +E+N 
Sbjct: 254 LNDIQYQMLRTASVEIIRYLKIEGGCNVQYALNPNSNEYIVIEVNP 299


>gi|168186507|ref|ZP_02621142.1| acetyl-CoA carboxylase, biotin carboxylase [Clostridium botulinum C
           str. Eklund]
 gi|169295519|gb|EDS77652.1| acetyl-CoA carboxylase, biotin carboxylase [Clostridium botulinum C
           str. Eklund]
          Length = 443

 Score = 74.8 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 80/220 (36%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     I +   I +            +K ++++++   GVPV P    
Sbjct: 77  AIHPGYGFLSENCDFARICDEYNIKFIGPDADTIYSLGNKSKAREMMIKAGVPVVPGSNG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL----DLLQSSSWNHGDQ 165
            +     ++     I  P ++K   GG   GI +    + +         ++ +    D 
Sbjct: 137 AVKTEECSLKEAERIGYPVMVKASVGGGGRGIRIANSKEELIKVFNTAKTEAKNAFGDDT 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+ ++    +   ++GD   +V  +            K             + +D  
Sbjct: 197 MYIEKLIENPRHIEFQILGDNYGNVIHLGERDCSIQRRHQKVL----EEAPSPIMNIDTR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K +   A +A +A+  +     +FL D  +   +++E+N 
Sbjct: 253 KRMGNAAIMAAKAVKYKNAGTIEFLLDK-NGDFYFMEMNT 291


>gi|83311807|ref|YP_422071.1| acetyl-CoA carboxylase biotin carboxylase subunit [Magnetospirillum
           magneticum AMB-1]
 gi|82946648|dbj|BAE51512.1| Biotin carboxylase [Magnetospirillum magneticum AMB-1]
          Length = 448

 Score = 74.8 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 85/220 (38%), Gaps = 18/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---- 109
            +H  +G   E+     ++E     +         +  DK+ +KQ V   G+PV P    
Sbjct: 78  AIHPGYGFLSENADFAQMVEEHGFVFIGPTPDHIRMMGDKITAKQAVKDAGIPVVPGSDG 137

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGDQ 165
           S+      ++    I  P +IK   GG   G+ V +  + +     L   ++ +      
Sbjct: 138 SVDTEETALEVAASIGYPVLIKATAGGGGKGMKVARNAEELVESWKLARNEAKAAFGNAD 197

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+Y+     +   ++ D    V  +        S + K+  +      PA +  D  
Sbjct: 198 VYMEKYLGKPRHIEMQILADNYGAVVHLGERD---CSLQRKHQKVLEEAPSPA-LNADQR 253

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             + ++A  A   +G R     +FL+   + + +++E+N 
Sbjct: 254 ARIGKIACDAIAKLGYRNAGTIEFLY--ENGEFYFIEMNT 291


>gi|325848841|ref|ZP_08170351.1| carbamoyl-phosphate synthase, large subunit [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
 gi|325480485|gb|EGC83547.1| carbamoyl-phosphate synthase, large subunit [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
          Length = 1069

 Score = 74.8 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 33/245 (13%), Positives = 83/245 (33%), Gaps = 16/245 (6%)

Query: 39  DRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQ 98
              V  ++    PD       G       +   L   +I    +G      + D+ + + 
Sbjct: 616 QEDVLDIIEKENPDGVILAFGGQTA--IKLAKDLHEHKINIIGTGFDVIDRAEDREKFEA 673

Query: 99  VVSSCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
           ++    +       V      +     +  P +I+P       G+ +   ++ +   L  
Sbjct: 674 LLEKLNIKRPKGYGVKSLEQGLKVAKDLGYPVLIRPSYVLGGQGMEITYDEERLKQYLKA 733

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216
           +   +  + +LI++Y+ G E+    + D    +    +   +           +ST + P
Sbjct: 734 AFKRDKENPVLIDKYLIGREIEVDAISDGDNILIPGIMEHLERAGVHS----GDSTSIYP 789

Query: 217 -AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN-----VQPGMTP 270
              I   I +++ +      + +  +G+    F+       ++ +E+N       P ++ 
Sbjct: 790 SINISDQIKEKIYQETLKIAKELKVKGMINIQFI--EYQDDIYIIEVNPRASRTVPYISK 847

Query: 271 VSIFP 275
           VS  P
Sbjct: 848 VSTVP 852



 Score = 64.4 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 46/286 (16%), Positives = 98/286 (34%), Gaps = 33/286 (11%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI---------DVD------------RSVGLV 45
           G ++E + S   G      L+  G +   I         D +             +V  +
Sbjct: 21  GQAAEFDYS---GTQACETLKSLGVETVLINSNPATIMTDPNLADRTYIEAINFETVVKI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   +PD     + G    +  +    + IL+   I    + I A     D+   ++ + 
Sbjct: 78  IEKERPDSIIATMGGQTSLNMTLKLYEEGILDKYNIKIIGTDIEAIKKGEDRELFRKTMK 137

Query: 102 SCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G P+  S +       +     I  P VI+P       G      D+ +   L    S
Sbjct: 138 EIGQPIVSSEIARSLDQGLKIAQKIGYPLVIRPAYTLGGSGGGFANNDEELKEVLSLGLS 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   + LIE+ + G +E+   V+ D      +I V   +       ++  +        
Sbjct: 198 LSPVSECLIEKSIKGWLEIEFEVLRDNEGK--KIVVCDMENVDPVGVHTGDSIVVAPCQS 255

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +  +   ++++ +    +AIG +G       ++  + +   +EIN 
Sbjct: 256 LEKESVNKLKQASLDIVEAIGVKGACNVQLAYNKENDEYAVIEINP 301


>gi|162147142|ref|YP_001601603.1| acetyl-CoA carboxylase biotin carboxylase subunit
           [Gluconacetobacter diazotrophicus PAl 5]
 gi|161785719|emb|CAP55290.1| Biotin carboxylase protein [Gluconacetobacter diazotrophicus PAl 5]
          Length = 447

 Score = 74.8 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 76/220 (34%), Gaps = 18/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+      +E   + +         +  DK+ +K  + + GVP+ P    
Sbjct: 77  AIHPGYGFLSENADFAETVEAHGLAFIGPTGHHIRIMGDKITAKTTMRALGVPLVPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
            +            +  P +IK   GG   G+ V +    I         ++ +    D+
Sbjct: 137 ALASLDEARVVAAQVGYPVLIKATAGGGGRGMKVARTPDEIEEAWSVARTEARAAFGNDE 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+Y+D    +   ++ D   +V               K          PA +  +  
Sbjct: 197 VYLEKYMDRPRHIELQILADTHGNVVHFGERDCSLQRRHQKLLEEAG---SPA-LTAEQR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +  +A  A   +G R     +FL+     +  ++E+N 
Sbjct: 253 DGIGAIATAALSKLGYRNAGTLEFLY--QDGQFCFIEMNT 290


>gi|15674655|ref|NP_268829.1| hypothetical protein SPy_0560 [Streptococcus pyogenes M1 GAS]
 gi|56808495|ref|ZP_00366235.1| COG0439: Biotin carboxylase [Streptococcus pyogenes M49 591]
 gi|13621770|gb|AAK33550.1| conserved hypothetical protein [Streptococcus pyogenes M1 GAS]
          Length = 427

 Score = 74.8 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 34/219 (15%), Positives = 75/219 (34%), Gaps = 37/219 (16%)

Query: 93  KMRSKQVVSSCGVPVCPSILVNRF-TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
           K R + V  + G+ +    ++N+F   +       P ++KP    +S+G+  +     + 
Sbjct: 117 KDRMRMVCEAGGLKMPKYKIINQFSDTNKIINWKYPLIVKPTSFLASIGVKKVYNFSELQ 176

Query: 152 LDL-----------------LQSSSWNHGDQLLIEQYVDGIELTC-GVMGDASLDVTEIA 193
             +                      +N   ++L+E+++DG E +   V+ +       I 
Sbjct: 177 QAVSQMLNVKFPVYIASGVYELGELYNLEPRVLVEEFIDGEEYSLESVVRNGIYTPLGIT 236

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR-SDFLFDP 252
                    + K       H+ P+ +  +    V   A   HQ +    I+  ++F    
Sbjct: 237 KK-----IVDEKLFMDEIGHIFPSNLNKEEKSRVYSWAEKLHQILQLNHITTHTEFRI-G 290

Query: 253 LSRKVFWLEINV------QPGMTPVSIFPEMAAYAGYSF 285
            +  +  +EI         P +   S   +     G+ F
Sbjct: 291 RNGDIILIEIGARIGGDCIPNLMKNSFIVK-----GFDF 324


>gi|330506389|ref|YP_004382817.1| carbamoyl-phosphate synthase, large subunit [Methanosaeta concilii
           GP-6]
 gi|328927197|gb|AEB66999.1| carbamoyl-phosphate synthase, large subunit [Methanosaeta concilii
           GP-6]
          Length = 1070

 Score = 74.8 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 51/277 (18%), Positives = 101/277 (36%), Gaps = 34/277 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL+  G+K+  +         D                +  ++   +PD    
Sbjct: 29  SGTQACKALKALGYKIVLVNSNPATIMTDPGMADATYIEPLNVERLAQIIEKERPDALLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G  G +  ++     IL+   +      + A     D++  K+ ++S G+ V  S  
Sbjct: 89  NLGGQNGLNLSLELARAGILDKFNVMVIGVKLDAIERGEDRIIFKETMNSLGIEVPKSTA 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +            +  P V++P       G  ++   + +   + +  + +   Q+LIE+
Sbjct: 149 IYTVEDAEKVALDLGYPVVVRPAYTMGGTGGGLVYNAEELRTVVSRGIAASLIGQVLIEE 208

Query: 171 YVDG-IELTCGVMGD-ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEV 227
            V G  EL   V+ D  +  +T   +   D           +S    P   I  ++  ++
Sbjct: 209 SVAGWEELELEVVRDSKNHMITVCFIENVDAMGVHT----GDSFCTAPMLTISQELQDKL 264

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           Q  ++   +AI   G +   F  DP + +V  +EIN 
Sbjct: 265 QDYSYRIVEAIKVIGGTNIQFAHDPKTGRVVVIEINP 301



 Score = 58.2 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/199 (13%), Positives = 74/199 (37%), Gaps = 14/199 (7%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQHLISPPYV 129
           LE   +    + + A  L+ D+ R + ++    +P+  S + +     ++    I  P +
Sbjct: 649 LEDAGVKILGTSVDAIDLAEDRDRFRMMMEELDIPMPESGMASNLDQALEVAKRIGYPLM 708

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG-VMGDAS-- 186
           ++P       G+ VI  ++ +   +  +        +LI+++++    T    + D    
Sbjct: 709 VRPSYVLGGRGMEVIYDEEMLERYVAAAVDVTPERPILIDRFLENALETEADALSDGKEA 768

Query: 187 -LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
            +      + ++  +S        ++  + P  I  +  + ++       Q +   G+  
Sbjct: 769 FVPAVMEHIEQAGIHS------GDSACVIPPVSISGEHLQTIEEYTRKIAQKLHVVGL-- 820

Query: 246 SDFLFDPLSRKVFWLEINV 264
            +  +      V+ LE N 
Sbjct: 821 MNMQYAISHDVVYVLEANP 839


>gi|300114561|ref|YP_003761136.1| acetyl-CoA carboxylase, biotin carboxylase [Nitrosococcus watsonii
           C-113]
 gi|299540498|gb|ADJ28815.1| acetyl-CoA carboxylase, biotin carboxylase [Nitrosococcus watsonii
           C-113]
          Length = 446

 Score = 74.8 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 81/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      +E     +         L  DK+ + + + + GVP  P    
Sbjct: 77  AIHPGYGFLAENADFAERVEQSGFVFIGPRPETIRLIGDKVSAIKAMKASGVPCVPGSEG 136

Query: 114 NRFTMDSQHL-----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
                D +++     I  P +IK   GG   G+ V+  +  +P  +     ++S+    D
Sbjct: 137 PLGEDDEENIAIAKEIGYPVMIKASGGGGGRGMRVVHSEAHLPTAISLTRSEASAAFGND 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+Y++    +   V+ D       +            K          PA  I  +
Sbjct: 197 MVYMEKYLENPRHVEFQVLADTHGQAIYLGERDCSMQRRHQK-----VVEEAPAPGITDE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             + +  +   A + +  RG    +FL+     + +++E+N 
Sbjct: 252 QRQRIGEICTEACRKMSYRGAGTFEFLY--QDGEFYFIEMNT 291


>gi|291166511|gb|EFE28557.1| pyruvate carboxylase [Filifactor alocis ATCC 35896]
          Length = 1142

 Score = 74.8 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 38/244 (15%), Positives = 84/244 (34%), Gaps = 22/244 (9%)

Query: 35  QIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSM 91
            ID    +  ++   K D   + +H  +G   E+     +     I +            
Sbjct: 61  PIDAYLDMASIIQIAK-DKNVDAIHPGYGFLSENPKFAQMCLDNGIEFIGPTPYTMLQMG 119

Query: 92  DKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147
           DK+ +K V   CGVP  P     I  +    D    I  P ++K   GG   G+ ++   
Sbjct: 120 DKISAKSVALECGVPTIPGHQKPIKNSLEAKDIAEKIGYPVILKAANGGGGRGMRIVNSV 179

Query: 148 QSIPLDLLQS-----SSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYS 201
           + +  +   +      +++  D + +E+Y+     +   ++GD   ++            
Sbjct: 180 EEMENEFKNAMSESIKAFD-SDVIFMEKYLHHPKHIEVQILGDKLGNIV-----HLFERD 233

Query: 202 YELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260
             L+          P   +   I +++   +    + +        +FL D      +++
Sbjct: 234 CSLQRRHQKVIEFAPSISLDESIKQKILSDSVKLAKYVNYISAGTMEFLVDQSGN-YYFI 292

Query: 261 EINV 264
           E+N 
Sbjct: 293 EMNP 296


>gi|283780499|ref|YP_003371254.1| pyruvate carboxylase [Pirellula staleyi DSM 6068]
 gi|283438952|gb|ADB17394.1| pyruvate carboxylase [Pirellula staleyi DSM 6068]
          Length = 1146

 Score = 74.8 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 85/221 (38%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC---PS 110
            +H  +G   E+  +    E   I +    + A     DK  ++ +     VPV     S
Sbjct: 80  AIHPGYGFLSENPDLARACEKAGITFVGPHVDALVNLGDKTFARNIAMKADVPVLGGSDS 139

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS-----SSWNHGDQ 165
           I      +     +  P ++K  KGG   G+ V+  ++     L Q+     S++     
Sbjct: 140 ITSPEQGLKLAAKLGYPIILKAAKGGGGRGMRVVASERDFVTQLEQAQRESLSAFG-SPD 198

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDI 223
           + IE+++     +   ++GD   ++  +           ++        + PA  +P D+
Sbjct: 199 VFIEKFITRASHIEVQLLGDKHGNLVHLWE-----RDCSVQRRHQKVVEIAPAPNLPGDV 253

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +   A    +A+        +FL D LS + +++E+N 
Sbjct: 254 RQALCDAAIRIGKAVKYENAGTVEFLVDRLSGQFYFIEVNP 294


>gi|257869261|ref|ZP_05648914.1| carbamoyl-phosphate synthase subunit L [Enterococcus gallinarum
           EG2]
 gi|257803425|gb|EEV32247.1| carbamoyl-phosphate synthase subunit L [Enterococcus gallinarum
           EG2]
          Length = 515

 Score = 74.8 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/221 (13%), Positives = 74/221 (33%), Gaps = 20/221 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+       E   + +         +  DK+++K      G+   P    
Sbjct: 83  AIHPGYGFLSENLAFAQRCEEEGLIFIGPSTHHLDIFGDKIKAKTAAIEAGIQSIPGSDG 142

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGDQ 165
            +      +        P +IK   GG   G+ V   ++           ++ +    D+
Sbjct: 143 PVNTIDDVLLFAETHGYPIMIKAALGGGGRGMRVAHDEKEAREGYERAKSEAKAAFGSDE 202

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDI 223
           + +E+Y+ +   +   ++GD+  +V              ++        V P   +    
Sbjct: 203 VYVEKYISNPKHIEVQILGDSHGNVV-----HLFERDCSVQRRHQKVVEVAPCVSMNAAQ 257

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +++ + A    + +G       +FL        +++E+N 
Sbjct: 258 REKICQAAVQLMKHVGYINAGTVEFLV--EGDNFYFIEVNP 296


>gi|188989662|ref|YP_001901672.1| methylcrotonoyl-CoA carboxylase alpha chain [Xanthomonas campestris
           pv. campestris str. B100]
 gi|167731422|emb|CAP49597.1| methylcrotonoyl-CoA carboxylase alpha chain [Xanthomonas campestris
           pv. campestris]
          Length = 680

 Score = 74.8 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 41/220 (18%), Positives = 74/220 (33%), Gaps = 19/220 (8%)

Query: 58  LHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL-- 112
           +H  +G   E+           + +      A     DK  +K ++   GVP+ P     
Sbjct: 96  IHPGYGFLSENAGFADACAHAGVVFIGPPAQAIRAMGDKSAAKALMQRAGVPLTPGYHGD 155

Query: 113 --VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQL 166
                F       I  P +IK   GG   G+  +    +    L     ++ S      +
Sbjct: 156 EQAPAFLRAQADAIGYPVLIKASAGGGGKGMRRVDASAAFEDALASCQREAQSAFGNAHV 215

Query: 167 LIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIY 224
           L+E+YV+    +   V  D     T  AV         ++          PA  +     
Sbjct: 216 LVEKYVERPRHIEIQVFAD-----THGAVVHLFERDCSVQRRHQKVLEEAPAPGMTEQRR 270

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             + + A  A +A+G  G    +F+  P     +++E+N 
Sbjct: 271 AAMGKAAVDAARAVGYVGAGTVEFIAGP-DGDFYFMEMNT 309


>gi|148654020|ref|YP_001281113.1| acetyl-CoA carboxylase, biotin carboxylase [Psychrobacter sp.
           PRwf-1]
 gi|148573104|gb|ABQ95163.1| acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha /
           biotin carboxylase [Psychrobacter sp. PRwf-1]
          Length = 448

 Score = 74.8 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 34/222 (15%), Positives = 74/222 (33%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +    + +            DK+ +K+ +   GVP  P    
Sbjct: 77  AIHPGYGFLAENAAFAEAVTDAGLVFIGPTAQNIRQMGDKVEAKKQMLLAGVPCVPGSEG 136

Query: 112 LVNRFTMDS---QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGD 164
            +     +       +  P +IK   GG   G+ V+ K   +   +     ++ +     
Sbjct: 137 ALPETENEVLALAEKVGYPVIIKAASGGGGRGMRVVDKQSELLKAIAMTKSEAEANFGDS 196

Query: 165 QLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+Y+     +   V+ D       +            K          PA  I   
Sbjct: 197 VVYLERYLQKPRHIEVQVLADTQGHAIHLGERDCSMQRRHQK-----VIEEAPAPGISES 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +++      A + +G  G    +FL+   + + F++E+N 
Sbjct: 252 QRQQIGEACVNACKRMGYVGAGTFEFLY--ENGEFFFIEMNT 291


>gi|330464924|ref|YP_004402667.1| carbamoyl-phosphate synthase L chain, ATP-binding protein
           [Verrucosispora maris AB-18-032]
 gi|328807895|gb|AEB42067.1| carbamoyl-phosphate synthase L chain, ATP-binding protein
           [Verrucosispora maris AB-18-032]
          Length = 445

 Score = 74.8 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 38/219 (17%), Positives = 83/219 (37%), Gaps = 16/219 (7%)

Query: 58  LHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL-- 112
           +H  +G   E+      +E   + +   G  A +   DK+ ++ ++++ GVPV P     
Sbjct: 78  IHPGYGFLSENADFARTVEASGLIWVGPGADAISAMGDKINARNLMAAAGVPVAPGTTEP 137

Query: 113 --VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQL 166
                  + +   I  P ++K   GG  +G+ V   D ++  +  +  ++         +
Sbjct: 138 AADLTTALAAAGEIGYPVMVKAAAGGGGMGMGVAADDDALRTEYDKVRAFAERMFGDGSV 197

Query: 167 LIEQ-YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
           LIE+ +     +   ++G A   V  +   +        K             +   + +
Sbjct: 198 LIERYFPRVRHVEVQILGLADGRVVALGERECSVQRRNQK----LVEESPSPAVSPKLRE 253

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +   A  A +A+  R     + L  P + + F+LE+N 
Sbjct: 254 RLLAAAVRAGEAVDYRNAGTVECLLVPGTDEFFFLEMNT 292


>gi|291528553|emb|CBK94139.1| carbamoyl-phosphate synthase, large subunit [Eubacterium rectale
           M104/1]
          Length = 1068

 Score = 74.8 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 34/225 (15%), Positives = 80/225 (35%), Gaps = 13/225 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTMDSQHLISPPYV 129
           L  + +    +       + D+    +++   G+P      +          + I  P +
Sbjct: 647 LMKMGVKILGTKAEDVDAAEDRELFDEILQKTGIPRAAGGTVFTAEEAKKVANEIGYPVL 706

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           ++P       G+ +   D  I   +   ++      +L+++Y+ G E+    + D     
Sbjct: 707 VRPSYVLGGQGMKIAWNDDEIEEFIGIINTITQDHPILVDKYLMGKEIEVDAICDG---- 762

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           T+I +P    +       S +S  V PA  I     + +        QA+   G+    F
Sbjct: 763 TDILIPGIMEHIERTGVHSGDSISVYPAHTISEKAKETLVEYTKRLAQALHVVGMINIQF 822

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +   +   ++ +E+N +   T     P ++   G    +L   ++
Sbjct: 823 I--DMDDNIYVIEVNPRSSRT----VPYISKVTGIPIVDLAARII 861



 Score = 56.7 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 38/232 (16%), Positives = 82/232 (35%), Gaps = 9/232 (3%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMR 95
            S+  ++   KPD     L G  G +  ++      L+   +    +       + D+  
Sbjct: 72  ESLKEIIIKEKPDSILPTLGGQAGLNLGMELAECGFLDEQGVKLIGTTAETIFKAEDRQA 131

Query: 96  SKQVVSSCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153
            K  +   G P+  S +V      +   + I  P V++P       G  +   +Q +   
Sbjct: 132 FKDTMEKIGEPIAASQVVKNIEDGIAFTNKIGYPVVLRPAFTLGGSGGGIAHDEQELIDI 191

Query: 154 LLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212
           L      +   ++L+E+ + G  E+   VM DA+ +   I V   +       ++  +  
Sbjct: 192 LSNGLRLSRVGEVLVERCIAGWKEIEYEVMRDANGN--CITVCNMENIDPVGVHTGDSIV 249

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
                 +    Y+ ++  A      +   G     +  +P S +   +E+N 
Sbjct: 250 VAPSQTLGDKEYQMLRTSALNIINELQITGGCNVQYALNPDSFEYCVIEVNP 301


>gi|291523985|emb|CBK89572.1| carbamoyl-phosphate synthase, large subunit [Eubacterium rectale
           DSM 17629]
          Length = 1068

 Score = 74.8 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 34/225 (15%), Positives = 80/225 (35%), Gaps = 13/225 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTMDSQHLISPPYV 129
           L  + +    +       + D+    +++   G+P      +          + I  P +
Sbjct: 647 LMKMGVKILGTKAEDVDAAEDRELFDEILQKTGIPRAAGGTVFTAEEAKKVANEIGYPVL 706

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           ++P       G+ +   D  I   +   ++      +L+++Y+ G E+    + D     
Sbjct: 707 VRPSYVLGGQGMKIAWNDDEIEEFIGIINTITQDHPILVDKYLMGKEIEVDAICDG---- 762

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           T+I +P    +       S +S  V PA  I     + +        QA+   G+    F
Sbjct: 763 TDILIPGIMEHIERTGVHSGDSISVYPAHTISEKAKETLVEYTKRLAQALHVVGMINIQF 822

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +   +   ++ +E+N +   T     P ++   G    +L   ++
Sbjct: 823 I--DMDDNIYVIEVNPRSSRT----VPYISKVTGIPIVDLAARII 861



 Score = 56.7 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 38/232 (16%), Positives = 82/232 (35%), Gaps = 9/232 (3%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMR 95
            S+  ++   KPD     L G  G +  ++      L+   +    +       + D+  
Sbjct: 72  ESLKEIIIKEKPDSILPTLGGQAGLNLGMELAECGFLDEQGVKLIGTTAETIFKAEDRQA 131

Query: 96  SKQVVSSCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153
            K  +   G P+  S +V      +   + I  P V++P       G  +   +Q +   
Sbjct: 132 FKDTMEKIGEPIAASQVVKNIEDGIAFTNKIGYPVVLRPAFTLGGSGGGIAHDEQELIDI 191

Query: 154 LLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212
           L      +   ++L+E+ + G  E+   VM DA+ +   I V   +       ++  +  
Sbjct: 192 LSNGLRLSRVGEVLVERCIAGWKEIEYEVMRDANGN--CITVCNMENIDPVGVHTGDSIV 249

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
                 +    Y+ ++  A      +   G     +  +P S +   +E+N 
Sbjct: 250 VAPSQTLGDKEYQMLRTSALNIINELQITGGCNVQYALNPDSFEYCVIEVNP 301


>gi|255308625|ref|ZP_05352796.1| carbamoyl phosphate synthase large subunit [Clostridium difficile
           ATCC 43255]
          Length = 1068

 Score = 74.8 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 27/224 (12%), Positives = 80/224 (35%), Gaps = 11/224 (4%)

Query: 67  LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV--PVCPSILVNRFTMDSQHLI 124
            +   L     P   +       + D+ +   ++    +  P    +      ++  + +
Sbjct: 644 KLAKFLHEKNTPILGTDFDDIDAAEDREKFDDLLERLDINRPKGKGVWSLNEGIEVANEL 703

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
             P +++P       G+ +   ++ +   L  +   +H + +LI++Y+ G E+    + D
Sbjct: 704 GYPVLVRPSYVLGGQGMEITYNEEKLSQYLQDAFDRDHKNPVLIDKYLTGREIEVDAICD 763

Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244
               +    +   +       +S  ++T      I  +I +++          +   G+ 
Sbjct: 764 KEDILIPGIMEHLERAGV---HSGDSTTMYPSQNISDEIKEKIVEYTKKIALDLNVLGMV 820

Query: 245 RSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
              F+      +++ +E+N +   T     P ++  +G    +L
Sbjct: 821 NIQFI--EFQNELYIIEVNPRASRT----VPYISKVSGVPIVDL 858



 Score = 62.8 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 50/289 (17%), Positives = 105/289 (36%), Gaps = 39/289 (13%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQID-------VDRSVGL--------------V 45
           G ++E + S   G     +L++ G +V  I+        D+ V                +
Sbjct: 21  GQAAEFDYS---GTQACQSLKEEGIEVVLINSNPATIMTDKEVADKIYIEPLTIEFIEKI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGL-------VQAILELLEIPYTHSGILASALSMDKMRSKQ 98
           +   +PD   ++L G  G+ GL        + IL+   +    + + +     D+   ++
Sbjct: 78  IEKERPD---SLLAGMGGQTGLNLAVELYEKGILDKYGVKIIGTSVESIKKGEDRDIFRE 134

Query: 99  VVSSCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
           V+     PV  S +V      +D    I  P V++P       G  +   ++ +   L  
Sbjct: 135 VMKEINQPVIVSDIVTDLQAGLDYALTIGYPVVVRPAYTLGGTGGGIADNEEELREILSH 194

Query: 157 SSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215
               +   Q+LIE+ + G  E+   V+ D+  +   I V   +       ++  +     
Sbjct: 195 GLQLSPVGQVLIEKSIKGWKEIEYEVIRDSKGN--CIVVCNMENIDPVGVHTGDSIVVAP 252

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              +       +++ +     A+  +G     F  +P S +   +EIN 
Sbjct: 253 TQTLSNKECAMLKKASLDILNAVEVQGGCNVQFALNPHSFEYAVIEINP 301


>gi|238923139|ref|YP_002936652.1| carbamoyl phosphate synthase large subunit [Eubacterium rectale
           ATCC 33656]
 gi|259585679|sp|C4ZEK2|CARB_EUBR3 RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|238874811|gb|ACR74518.1| carbamoyl phosphate synthase large subunit [Eubacterium rectale
           ATCC 33656]
          Length = 1068

 Score = 74.8 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 34/225 (15%), Positives = 80/225 (35%), Gaps = 13/225 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTMDSQHLISPPYV 129
           L  + +    +       + D+    +++   G+P      +          + I  P +
Sbjct: 647 LMKMGVKILGTKAEDVDAAEDRELFDEILQKTGIPRAAGGTVFTAEEAKKVANEIGYPVL 706

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           ++P       G+ +   D  I   +   ++      +L+++Y+ G E+    + D     
Sbjct: 707 VRPSYVLGGQGMKIAWNDDEIEEFIGIINTITQDHPILVDKYLMGKEIEVDAICDG---- 762

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           T+I +P    +       S +S  V PA  I     + +        QA+   G+    F
Sbjct: 763 TDILIPGIMEHIERTGVHSGDSISVYPAHTISEKAKETLVEYTKRLAQALHVVGMINIQF 822

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +   +   ++ +E+N +   T     P ++   G    +L   ++
Sbjct: 823 I--DMDDNIYVIEVNPRSSRT----VPYISKVTGIPIVDLAARII 861



 Score = 56.7 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 38/232 (16%), Positives = 82/232 (35%), Gaps = 9/232 (3%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMR 95
            S+  ++   KPD     L G  G +  ++      L+   +    +       + D+  
Sbjct: 72  ESLKEIIIKEKPDSILPTLGGQAGLNLGMELAECGFLDEQGVKLIGTTAETIFKAEDRQA 131

Query: 96  SKQVVSSCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153
            K  +   G P+  S +V      +   + I  P V++P       G  +   +Q +   
Sbjct: 132 FKDTMEKIGEPIAASQVVKNIEDGIAFTNKIGYPVVLRPAFTLGGSGGGIAHDEQELIDI 191

Query: 154 LLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212
           L      +   ++L+E+ + G  E+   VM DA+ +   I V   +       ++  +  
Sbjct: 192 LSNGLRLSRVGEVLVERCIAGWKEIEYEVMRDANGN--CITVCNMENIDPVGVHTGDSIV 249

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
                 +    Y+ ++  A      +   G     +  +P S +   +E+N 
Sbjct: 250 VAPSQTLGDKEYQMLRTSALNIINELQITGGCNVQYALNPDSFEYCVIEVNP 301


>gi|239623095|ref|ZP_04666126.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239522462|gb|EEQ62328.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 450

 Score = 74.8 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 78/221 (35%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  FG   E+     +     I +        +   +K  +++ +    VPV P    
Sbjct: 77  AIHPGFGFLSENAKFAKLCAECNITFIGPSAEIISKMGNKSEARKTMMEAEVPVVPGSKE 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS----IPLDLLQSSSWNHGDQ 165
            +   +  ++    I  P +IK   GG   G+ + +  +          ++S      D 
Sbjct: 137 PVHTPQDGLEMAKTIGFPVMIKASSGGGGKGMRISRSAEDFTELFNAAQMESVKGFSDDT 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           + IE+Y++    +   +M D   +V  +            K          P   I  ++
Sbjct: 197 MYIEKYIEKPRHVEFQIMADKHGNVVHLGERDCSIQRRHQK-----VLEEAPCDVISPEL 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +   A  A +A+G       +FL D   +  +++E+N 
Sbjct: 252 RRRMGDTAVRAAKAVGYENAGTIEFLLDK-DKNFYFMEMNT 291


>gi|254362943|ref|ZP_04979009.1| biotin carboxylase [Mannheimia haemolytica PHL213]
 gi|153094591|gb|EDN75405.1| biotin carboxylase [Mannheimia haemolytica PHL213]
          Length = 447

 Score = 74.8 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 82/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         L  DK+ +   +   GVP  P    
Sbjct: 77  AIHPGYGFLSENANFAEQVEKSGFIFIGPTADVIRLMGDKVSAINAMKKAGVPCVPGSDG 136

Query: 112 ---LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
                 +   +    I  P +IK   GG   G+ V+  ++ +   +     ++ +  + D
Sbjct: 137 PVGNDPKKNKEIAKRIGYPVIIKASGGGGGRGMRVVHHEKDLEESIAMTKAEAKAAFNND 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+Y++    +   V+ D   +   +A           K          PA+ I  +
Sbjct: 197 MVYMEKYLENPRHIEIQVLADTHGNAVYLAERDCSMQRRHQK-----VVEEAPAQGITPE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + + +      A + IG RG    +FL+   + + +++E+N 
Sbjct: 252 LRQFIGERCANACREIGYRGAGTFEFLY--ENGEFYFIEMNT 291


>gi|116248826|ref|YP_764667.1| acetyl-CoA carboxylase biotin carboxylase subunit [Rhizobium
           leguminosarum bv. viciae 3841]
 gi|115253476|emb|CAK11866.1| putative biotin carboxylase [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 461

 Score = 74.8 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 79/221 (35%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+G     +    + +      A     DK+ ++QV    GVP  P    
Sbjct: 78  AVHPGYGFLSENGDFADAVRDAGMIFIGPSGDAIRTLGDKVAARQVAKRAGVPTVPGSDG 137

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK----DQSIPLDLLQSSSWNHGDQ 165
            +            I  P +IK   GG   GI ++      +Q  PL   ++ +      
Sbjct: 138 RVAGLEEARLLAGEIGFPVMIKAAAGGGGRGIRIVDSIAELEQQFPLASAEALAAFGDGG 197

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           L +E+ +     +   + GD    V              L+          PA  +P D+
Sbjct: 198 LYLEKVIARARHVEVQIFGDGQNFV------HFFERECSLQRRRQKVWEEAPAFMLPADM 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +   A    + +G RG    ++L+D  +   +++E+N 
Sbjct: 252 RERLCVSAVALAREVGYRGAGTVEYLYDDETGDFYFIEVNT 292


>gi|77463067|ref|YP_352571.1| 3-methylcrotonoyl-CoA carboxylase, alpha subunit [Rhodobacter
           sphaeroides 2.4.1]
 gi|77387485|gb|ABA78670.1| 3-methylcrotonoyl-CoA carboxylase, alpha subunit [Rhodobacter
           sphaeroides 2.4.1]
          Length = 646

 Score = 74.8 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 44/227 (19%), Positives = 86/227 (37%), Gaps = 27/227 (11%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      +E   + +      A      K  +K +++  GVPV P    
Sbjct: 77  AIHPGYGFLSENPEFVEAVEAAGLVFIGPSAAAIRAMGLKDAAKALMAEAGVPVVPGY-- 134

Query: 114 NRFTMDSQHL------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----G 163
           +    + +HL      I  P +IK + GG   G+  +++ +     L  + +        
Sbjct: 135 HGADQEPEHLALMAQDIGYPVLIKAVAGGGGKGMRRVERAEEFAAALASARAEARTAFGN 194

Query: 164 DQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPL 221
           + +LIE+++D    +   V GD +  V              L+          PA  +  
Sbjct: 195 EAVLIEKWIDCPRHIELQVFGDGTDAVHLYE------RDCSLQRRHQKVIEEAPAPGMTP 248

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR----KVFWLEINV 264
            +   +   A  A +AIG RG    +F+ D  +     + +++E+N 
Sbjct: 249 AMRAAMGEAAVRAARAIGYRGAGTVEFIVDGSAGLSPDRFWFMEMNT 295


>gi|313895745|ref|ZP_07829301.1| carbamoyl-phosphate synthase, large subunit [Selenomonas sp. oral
           taxon 137 str. F0430]
 gi|312975871|gb|EFR41330.1| carbamoyl-phosphate synthase, large subunit [Selenomonas sp. oral
           taxon 137 str. F0430]
          Length = 1075

 Score = 74.8 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 45/231 (19%), Positives = 100/231 (43%), Gaps = 11/231 (4%)

Query: 42  VGLVLAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSK 97
           +  ++A  KP+     L G  G +  VQ     ILE   +    + + A   + D+ R K
Sbjct: 74  LAEIIAKEKPEGLLATLGGQAGLNLAVQLAERGILEQHGVELLGTSLDAIEKAEDRERFK 133

Query: 98  QVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
           + +   G P+  S +V      ++  + I  P +++P       G  + + ++ +   ++
Sbjct: 134 ETMEKLGEPIPESTIVEDVHSAVEFANKIGYPVIVRPAYTMGGTGGGIAENEEELIAIVI 193

Query: 156 QSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHV 214
           +  +++   Q+LIE+ V G  E+   V+ D   +   I V   + +     ++  +S  V
Sbjct: 194 KGLNYSMIGQVLIERSVAGWKEIEFEVIRDGRDN--CITVCSMENFDPVGVHT-GDSIVV 250

Query: 215 LPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            PA+ +    Y+ ++  +    + +G  G   + +  D  S + + +E+N 
Sbjct: 251 APAQTLTDHEYQMLRSSSLRIIRELGIEGGCNAQYALDTQSDRYYVIEVNP 301



 Score = 70.2 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 43/263 (16%), Positives = 92/263 (34%), Gaps = 30/263 (11%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLV------- 68
           AL   G +   I         D D S  L    L  +   N++      DG++       
Sbjct: 582 ALRSMGIEAIIINNNPETVSTDFDISDRLYFEPLTVEDVLNIVD-KEKPDGVIVQFGGQT 640

Query: 69  ----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQH 122
                A LE   +    + +     S D+ R  +V++  G+     I V      +    
Sbjct: 641 AINLAAALERAGLRVYGTSVDDIDRSEDRERFDEVLTQTGISRPEGISVTNLEDAVAGAK 700

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + ++  +  +   + ++        +L+++Y+ G E+    +
Sbjct: 701 RIGYPVMVRPSYVLGGRAMEIVYNEDELRDYMQRAVKVTPDHPVLVDRYMQGTEVEVDAI 760

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCR 241
            D      ++ +P    +       S +S  V P + +P  +   +         A+  +
Sbjct: 761 SDG----VDVVIPGIMEHIERAGVHSGDSIAVYPPQTLPARVIYTIIDYTKRLAVALHVK 816

Query: 242 GISRSDFLFDPLSRKVFWLEINV 264
           G+    F+      +VF +E+N 
Sbjct: 817 GLLNIQFVV--AHDEVFIIEVNP 837


>gi|229168686|ref|ZP_04296408.1| Pyruvate carboxylase [Bacillus cereus AH621]
 gi|228614842|gb|EEK71945.1| Pyruvate carboxylase [Bacillus cereus AH621]
          Length = 1148

 Score = 74.8 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 29/243 (11%), Positives = 83/243 (34%), Gaps = 21/243 (8%)

Query: 35  QIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSM 91
            ID    +  ++   K +   + +H  +G   E+       E   I +         +  
Sbjct: 62  PIDAYLDIEGIIEIAKSNHV-DAIHPGYGFLSENIQFAKRCEEEGIIFIGPKSKHLDMFG 120

Query: 92  DKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147
           DK++++       +P+ P     +       +       P +IK   GG   G+ +++  
Sbjct: 121 DKVKARTQAQLAQIPIIPGSDGPVNSIEEVEEFAEKYDYPIIIKASLGGGGRGMRIVRAS 180

Query: 148 QSIPL----DLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSY 202
           + +         ++ +    D++ +E++V+    +   ++ D   +V  +          
Sbjct: 181 EELRESYNRAKSEAKAAFGNDEVYVEKFVEKPKHIEVQILADEEGNVVHLYE-----RDC 235

Query: 203 ELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
            ++        + P   +   + + +   A    + +        +FL      + +++E
Sbjct: 236 SVQRRHQKVVEIAPSVSLSDGLRQRICDAAVKLTKNVNYLNAGTVEFLV--KGDEFYFIE 293

Query: 262 INV 264
           +N 
Sbjct: 294 VNP 296


>gi|307709226|ref|ZP_07645685.1| carbamoyl-phosphate synthase large chain [Streptococcus mitis
           SK564]
 gi|307620172|gb|EFN99289.1| carbamoyl-phosphate synthase large chain [Streptococcus mitis
           SK564]
          Length = 1058

 Score = 74.8 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 26/228 (11%), Positives = 77/228 (33%), Gaps = 19/228 (8%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYV 129
           L    +    + +     + D+   +Q +    +P  P            +   I  P +
Sbjct: 646 LAKAGVTILGTQVADLDRAEDRDLFEQALKDLDIPQPPGQTATNEEEAVLAARKIGFPVL 705

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS--- 186
           ++P        + +++ ++ +   +  +   +    +L++ Y+ G E     + D     
Sbjct: 706 VRPSYVLGGRAMEIVENEEDLRSYMRTAVKASPDHPVLVDSYIVGQECEVDAISDGENVL 765

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISR 245
           +      + ++  +S        +S  V P + +   + + +          + C G+  
Sbjct: 766 IPGIMEHIERAGVHS-------GDSMAVYPPQTLSQKVQETIADYTKRLAIGLNCLGMMN 818

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
             F+      KV+ +E+N +   T     P ++        ++   ++
Sbjct: 819 IQFVI--KDEKVYVIEVNPRASRT----VPFLSKVTNIPMAQVATKLI 860



 Score = 70.2 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 54/302 (17%), Positives = 115/302 (38%), Gaps = 37/302 (12%)

Query: 20  KACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNVL 58
           +AC S L++ G++V  ++        D+ +                +L   +PD     L
Sbjct: 32  QACLS-LKEEGYEVVLVNSNPATIMTDKEIADKVYIEPITLEFVTRILRKERPDALLPTL 90

Query: 59  HGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
            G  G +  ++     IL+ L +    + + A   + D+   KQ++     P+  S +VN
Sbjct: 91  GGQTGLNMAMELSKNGILDELGVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIVN 150

Query: 115 --RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                +     I  P +++P       G  +   ++ +          +   Q LIE+ +
Sbjct: 151 TVEEAVAFAATIGYPVIVRPAFTLGGTGGGMCANEEELREIAENGLKLSPVTQCLIERSI 210

Query: 173 DG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRL 230
            G  E+   VM D++ +   + V   + +   +   + +S    PA+ +     + ++  
Sbjct: 211 AGFKEIEYEVMRDSADNA--LVVCNMENFD-PVGIHTGDSIVFAPAQTMSDYENQMLRDA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    +A+   G        DP S K + +E+N  P ++  S     +   GY   +L  
Sbjct: 268 SLSIIRALKIEGGCNVQLALDPHSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325


>gi|256085881|ref|XP_002579139.1| acetyl-CoA carboxylase; methylcrotonyl-CoA carboxylase [Schistosoma
           mansoni]
 gi|238664549|emb|CAZ35378.1| acetyl-CoA carboxylase [Schistosoma mansoni]
          Length = 1101

 Score = 74.8 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 80/220 (36%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+ L  A LE + + +      A     DK+ SK++ +   V   P    
Sbjct: 34  AVHPGYGFLSENTLFAAELEKMNVVFLGPNSRAIKAMGDKIESKRIANQAKVNCIPGYDG 93

Query: 112 LVNRFTMDS--QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
            V+     +     I  P +IK   GG   G+ +   ++ +         ++ +    D+
Sbjct: 94  EVDGPDEAARIAAEIGYPVMIKASTGGGGKGMRIAWDEKEVREGYRLSKSEAKASFGDDR 153

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           +LIE+++D    +   ++ D   +   +   +        K             +   + 
Sbjct: 154 MLIEKFIDNPRHIEIQLLCDRHGNAIYLNERECSIQRRNQK----VIEEAPSTFLDSGLR 209

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K +   A    +A+        +FL D   R  ++LE+N 
Sbjct: 210 KAMGEQAVSLAKAVNYDSAGTVEFLVDSK-RNFYFLEMNT 248


>gi|256085879|ref|XP_002579138.1| acetyl-CoA carboxylase; methylcrotonyl-CoA carboxylase [Schistosoma
           mansoni]
 gi|238664548|emb|CAZ35377.1| acetyl-CoA carboxylase [Schistosoma mansoni]
          Length = 1189

 Score = 74.8 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 80/220 (36%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+ L  A LE + + +      A     DK+ SK++ +   V   P    
Sbjct: 122 AVHPGYGFLSENTLFAAELEKMNVVFLGPNSRAIKAMGDKIESKRIANQAKVNCIPGYDG 181

Query: 112 LVNRFTMDS--QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
            V+     +     I  P +IK   GG   G+ +   ++ +         ++ +    D+
Sbjct: 182 EVDGPDEAARIAAEIGYPVMIKASTGGGGKGMRIAWDEKEVREGYRLSKSEAKASFGDDR 241

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           +LIE+++D    +   ++ D   +   +   +        K             +   + 
Sbjct: 242 MLIEKFIDNPRHIEIQLLCDRHGNAIYLNERECSIQRRNQK----VIEEAPSTFLDSGLR 297

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K +   A    +A+        +FL D   R  ++LE+N 
Sbjct: 298 KAMGEQAVSLAKAVNYDSAGTVEFLVDSK-RNFYFLEMNT 336


>gi|188583117|ref|YP_001926562.1| urea carboxylase [Methylobacterium populi BJ001]
 gi|179346615|gb|ACB82027.1| urea carboxylase [Methylobacterium populi BJ001]
          Length = 1179

 Score = 74.8 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 39/256 (15%), Positives = 84/256 (32%), Gaps = 30/256 (11%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      L    I +             K  ++++    GVP+ P   +
Sbjct: 77  AVHPGYGFLSENVGFAERLAAEGIRFIGPRPEHLRAFGLKHTARELAKVSGVPLLPGTDL 136

Query: 114 N---RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQL 166
                  + +   I  P ++K   GG  +G+ +    + +                  ++
Sbjct: 137 LPDVETALRAAEAIGYPVMLKSTAGGGGIGMQLCHSAEELAERFAAVERTARASFGDARV 196

Query: 167 LIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIY 224
            +E++V     +   + GD    V  +           L+  +       PA  +   + 
Sbjct: 197 YLERFVAQARHVEVQIFGDGRGRVVALGE-----RDCSLQRRNQKVIEETPAPGLSEPVR 251

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI---FPEMAAYA 281
             +   A    +++        +F++DP      +LE+N +       +    P   A  
Sbjct: 252 ARLHAAAVALGESVAYASAGTVEFIYDPQREDFSFLEVNTR-------LQVEHPVTEAVF 304

Query: 282 GYSFRELLLWMVEDAS 297
           G    +L+ WMV  A+
Sbjct: 305 GI---DLVEWMVRQAA 317


>gi|319944339|ref|ZP_08018613.1| pyruvate carboxylase [Lautropia mirabilis ATCC 51599]
 gi|319742300|gb|EFV94713.1| pyruvate carboxylase [Lautropia mirabilis ATCC 51599]
          Length = 1172

 Score = 74.8 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 80/221 (36%), Gaps = 18/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+  +        I +            +K+ +++   + GVPV P+   
Sbjct: 88  AIHPGYGFLSENPELPRACAAAGIAFIGPTAEVMTRLGNKVAAREAAVAAGVPVMPATDP 147

Query: 114 NRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQ----SIPLDLLQSSSWNHGDQ 165
               ++        I  P ++K   GG   G+  I+  +     +P+   +S +    D+
Sbjct: 148 LPDDIEKCLELAAAIGYPLMLKASWGGGGRGMRAIETPEDLRVQLPVARRESKAAFGNDE 207

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           + +E+ V     +   V+GD   +V              ++  +       PA  +  + 
Sbjct: 208 VYLEKLVRRAHHVEVQVLGDLHGNVV-----HLFERDCSVQRRNQKVVERAPAPYLTDEQ 262

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              +   A    +A+        +FL D  + K +++E+N 
Sbjct: 263 RAGLCEAALKLARAVNYTHAGTVEFLMDADTGKFYFIEVNP 303


>gi|260663070|ref|ZP_05863963.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus
           fermentum 28-3-CHN]
 gi|260552691|gb|EEX25691.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus
           fermentum 28-3-CHN]
          Length = 1059

 Score = 74.8 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 49/299 (16%), Positives = 100/299 (33%), Gaps = 42/299 (14%)

Query: 22  CASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNV--LHGNFGEDGLVQ- 69
           C  AL+  G++   I         D   S  L    L  +   NV  L    G   +VQ 
Sbjct: 577 CVRALQKLGYEAIVINSNPETVSTDFSVSDKLYFEPLTLENVLNVTDLEQPVG--AIVQF 634

Query: 70  ---------AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--M 118
                    A LE   +    + +     + D+    QV+    +     +        +
Sbjct: 635 GGQTAINLAAGLEANGVKILGTTVADLDAAEDRELFDQVIKDLNLRQPIGMTATTRQGVL 694

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           D+   I  P +++P        + ++     +   L Q++       +L++ Y++G E  
Sbjct: 695 DAAKEIGYPVLVRPSYVLGGKAMEIVYGQAELEDYLNQNADVTGSHPILVDAYLEGAECE 754

Query: 179 CGVMGDAS---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLA 234
              + D     L      +  +  +S        +S  V P + +   +  +++      
Sbjct: 755 VDAICDGERVLLPGIMEHIEHAGVHS-------GDSMAVYPPQSLSGAVKVQIEEATKKL 807

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
             A+ C GI    F+      + + LE+N +   T     P ++   G    +L   ++
Sbjct: 808 AVALKCVGIMNIQFIIH--DGQAYVLEVNPRASRT----VPFLSKVTGIEMAQLATKVI 860



 Score = 72.1 bits (176), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 54/314 (17%), Positives = 111/314 (35%), Gaps = 37/314 (11%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQID-------VDRSVGL--------------V 45
           G ++E + S   G     AL++ G++   ++        D+ +                +
Sbjct: 21  GQAAEFDYS---GTQACLALKEEGYETVLVNSNPATIMTDKEIADHVYIEPLTVAALTRI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           L    PD     L G  G +  V      IL+ L I    + + +   + D+ + K+++ 
Sbjct: 78  LRQEAPDALLPTLGGQIGLNLAVALSKTGILDELGIELLGTKLASIDQAEDREKFKELMQ 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G PV  S+ V+     +     +  P +++P       G  +   +  +         
Sbjct: 138 ELGEPVPASLTVSTVEQALAFAKTVGYPVIVRPAFTMGGTGGGLANNEAELAEIAKNGLE 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   Q LIE+ + G  E+   VM DA+ +   + V   + +     ++  +        
Sbjct: 198 LSPATQCLIEKSIAGYKEIEFEVMRDAADNT--MVVCCMENFDPVGIHTGDSIVFAPSQT 255

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278
           +    Y+ ++  A     A+   G        DP S     +E+N  P ++  S     +
Sbjct: 256 LADREYQRLRDCALKLISALKIEGGCNVQLALDPNSYDYNVIEVN--PRVSRSS--ALAS 311

Query: 279 AYAGYSFRELLLWM 292
              GY   +L   +
Sbjct: 312 KATGYPIAKLAAKI 325


>gi|255079534|ref|XP_002503347.1| pyruvate carboyxlase [Micromonas sp. RCC299]
 gi|226518613|gb|ACO64605.1| pyruvate carboyxlase [Micromonas sp. RCC299]
          Length = 1251

 Score = 74.8 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/221 (14%), Positives = 77/221 (34%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       E   I +            DK+ +K +   CG+P+ P    
Sbjct: 175 AIHPGYGFLSENANFARRCEEEGIIFIGPRSETITQMGDKVIAKSLAKECGLPLVPGTEE 234

Query: 114 NRFTMDSQHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGDQ 165
               +++          P ++K   GG   G+ +++    +         ++ +     +
Sbjct: 235 ATDDVEAAEAFAQEFGMPIMLKAAMGGGGRGMRIVRTMGELKDAFTRASSEALAAFGDGR 294

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           + +E+YV+    +   ++ D   +V              ++        + PA  +   +
Sbjct: 295 MFLERYVEAPRHIEVQILADGHGNVV-----HLHERDCSVQRRHQKVVELAPAPILDPAL 349

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +   A    + +  R     +F+ D   R  ++LE+N 
Sbjct: 350 RQTLHDDAVRLAKHVNYRNAGTVEFMVDKEGRH-YFLEVNP 389


>gi|170105050|ref|XP_001883738.1| pyruvate carboxylase [Laccaria bicolor S238N-H82]
 gi|164641373|gb|EDR05634.1| pyruvate carboxylase [Laccaria bicolor S238N-H82]
          Length = 1198

 Score = 74.8 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 83/221 (37%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
           ++H  +G   E+      +E   I +            DK +++ +    GVPV P    
Sbjct: 121 MIHPGYGFLSENAAFARKVEQAGIAFVGPSPEVIDGLGDKTKARTLAMKVGVPVVPGTPG 180

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSWNHGDQ 165
            +   +           P +IK   GG   G+ V+++           + ++ +      
Sbjct: 181 PVDTYKDGEAFIQEYGFPVIIKAAMGGGGRGMRVVREQSDFETSFQRAVSEAKAAFGDGT 240

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDI 223
           + IE++++    +   ++ DA  +               ++        V PA  +P ++
Sbjct: 241 VFIERFLERPRHIEVQILADAVGNTI-----HLFERDCSVQRRHQKVVEVAPATHLPEEV 295

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +   A    +++G R    ++FL D + R  +++EIN 
Sbjct: 296 RQAILADAIKLAKSVGYRNAGTAEFLVDQMGRH-YFIEINP 335


>gi|156743296|ref|YP_001433425.1| carbamoyl-phosphate synthase large subunit [Roseiflexus
           castenholzii DSM 13941]
 gi|156234624|gb|ABU59407.1| carbamoyl-phosphate synthase, large subunit [Roseiflexus
           castenholzii DSM 13941]
          Length = 1112

 Score = 74.8 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 50/278 (17%), Positives = 97/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG      L   GF+V  ++ + +                     V  ++   +PD    
Sbjct: 29  SGVQACKVLRREGFRVVLVNSNPATIMTDPQMADATYIEPLTPEIVEKIIERERPDALLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G  G +  +    + +L+   +    +   A AL+ D+   K+ +   G+ V     
Sbjct: 89  TVGGQTGLNLAMKLAERGVLDRYGVQLIGASPKAIALAEDRELFKRAMIDAGLRVPLGET 148

Query: 113 VNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           V+     +++   I  P +++P       G  V   +  +     +    +   Q+LIEQ
Sbjct: 149 VSTVDQALEAAARIGYPVLVRPSFTLGGSGGGVAYSEAQLREIADRGLRASPVTQVLIEQ 208

Query: 171 YVDG-IELTCGVMGDA-SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            V G  E    VM D     V   ++   D           +S  + P   +    Y+ +
Sbjct: 209 SVLGWKEYELEVMRDRMDNFVVVCSIENLDPMGVHT----GDSITIAPTMTLTDREYQRL 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           + +A +  + +G   G S   F  DP       +E+N 
Sbjct: 265 REMAKIVIRTVGVETGGSNIQFAVDPRDGTPLVIEMNP 302



 Score = 62.8 bits (152), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 53/296 (17%), Positives = 100/296 (33%), Gaps = 42/296 (14%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFG-EDGL------- 67
           AL D G++   I         D D S  L    L  +   NV     G  DG        
Sbjct: 598 ALRDLGYETIMINCNPETVSTDYDTSDRLYFEPLTLEDVLNVWENESGMRDGRAGTPVPM 657

Query: 68  -----------VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116
                      +   L    +P   +   +  L+ D+ R  +++    +    S +    
Sbjct: 658 LVQFGGQTPLNLAKGLAAAGVPIWGTSQDSIDLAEDRGRFSELLRQLDMMQPESGMAADL 717

Query: 117 TMDS--QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-D 173
                    I  P +++P        + +   D+ +   + +++  + G  +LI++Y+ D
Sbjct: 718 QTARRVAQRIGYPVLVRPSYVLGGRAMAIAYDDEGLAQYIHEATQISAGQPVLIDRYLED 777

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAF 232
             EL    +GD    V    +   +    E    S +S  V+P  K+       ++    
Sbjct: 778 AFELDVDAVGDGERVVIGGIMEHIE----EAGVHSGDSAMVMPPFKVSAYHLSIIRDETI 833

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
              +A+  +G+    F       +V+ LE+N +   T     P +A   G     L
Sbjct: 834 RIGEALRVKGLMNIQFAI--KDDEVYVLEVNPRASRT----VPFVAKATGVPLARL 883


>gi|197106511|ref|YP_002131888.1| biotin carboxylase [Phenylobacterium zucineum HLK1]
 gi|196479931|gb|ACG79459.1| biotin carboxylase [Phenylobacterium zucineum HLK1]
          Length = 1091

 Score = 74.8 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 40/218 (18%), Positives = 84/218 (38%), Gaps = 19/218 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+  +        + +         L  DK R++ + +SCGVPV P    
Sbjct: 75  AIHPGYGFLAENPALARACAEAGLAFVGPAPETLELFGDKARARALATSCGVPVLPGTEG 134

Query: 114 NRFTMDSQHLISP--PYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQLL 167
                +++  ++     ++K + GG   G+     D  +         ++ +    ++L 
Sbjct: 135 PTTLEEARAFLAEHGAVMVKAVAGGGGRGMRPATTDDELAQAFERCASEAKAAFGDERLY 194

Query: 168 IEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYK 225
           +E+++     +   V+GD        +V         L+        + PA  +P ++ +
Sbjct: 195 VERFLPHARHVEVQVVGDG------RSVVHLFDRECSLQRQRQKLVEIAPADMLPAELRE 248

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            +   A    QA G RG+   +FL D    +  ++E N
Sbjct: 249 RLFAHAVALAQAAGYRGLGTIEFLVD--GDEAVFIEAN 284


>gi|90424843|ref|YP_533213.1| carbamoyl-phosphate synthase L chain, ATP-binding [Rhodopseudomonas
           palustris BisB18]
 gi|90106857|gb|ABD88894.1| Carbamoyl-phosphate synthase L chain, ATP-binding [Rhodopseudomonas
           palustris BisB18]
          Length = 671

 Score = 74.8 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 74/220 (33%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H  +G   E       L    I +      A A   DK+ SK+  ++  V   P  L 
Sbjct: 77  AVHPGYGFLSEREAFAVALADAGIVFIGPNRGAIAAMGDKIESKKAAAAANVSTVPGYLG 136

Query: 113 ---VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSWNHGDQ 165
                +  +     I  P +IK   GG   G+ +      +     L   ++ S    D+
Sbjct: 137 VIEDEKHAVKIADQIGYPVMIKASAGGGGKGMRIAHSTSEVAEGFGLAKAEAKSSFGDDR 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+++ D   +   V+GD   +V  +   +        K             +     
Sbjct: 197 VFIEKFIVDPRHIEIQVLGDKHGNVIYLGERECSIQRRNQK----VIEEAPSPLLDETTR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +++   A    +A+        +F      +  ++LE+N 
Sbjct: 253 RKMGEQAVALAKAVNYDSAGTVEF-VAGQDKSFYFLEMNT 291


>gi|227529752|ref|ZP_03959801.1| phosphoribosylaminoimidazole carboxylase [Lactobacillus vaginalis
           ATCC 49540]
 gi|227350236|gb|EEJ40527.1| phosphoribosylaminoimidazole carboxylase [Lactobacillus vaginalis
           ATCC 49540]
          Length = 371

 Score = 74.8 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 41/206 (19%), Positives = 86/206 (41%), Gaps = 13/206 (6%)

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV-NRFTMDSQ- 121
           E+  + A+ ++ +  Y   G      + +++R K  +   G+   P + V NR  ++   
Sbjct: 75  ENVDLNALRDVADRVYIPQGTNLLYTTKNRIREKSFLRDAGLKTAPFMAVKNRDDLEQAI 134

Query: 122 HLISPPYVIKPLKGG-SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
             I  P V+K  +GG    G  V+  D  +      +   +  D +L       +E +  
Sbjct: 135 KKIGYPAVLKTCEGGYDGHGQEVLLSDDDLE---KCAGILSTKDAILEGWVPFKLECSVM 191

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V  + + +VT   V ++  +   L  S      ++PA+I  ++ ++ Q++A     AI  
Sbjct: 192 VGRNENGEVTVFPVSENIHHDEILHLS------IVPARISAELQEKAQKMAVQIAHAIDL 245

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQP 266
           RGI   +        +++  E+  +P
Sbjct: 246 RGILGVEMFV-GNDGEIYINELAPRP 270


>gi|160892510|ref|ZP_02073300.1| hypothetical protein CLOL250_00039 [Clostridium sp. L2-50]
 gi|156865551|gb|EDO58982.1| hypothetical protein CLOL250_00039 [Clostridium sp. L2-50]
          Length = 1067

 Score = 74.8 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/230 (13%), Positives = 90/230 (39%), Gaps = 20/230 (8%)

Query: 70  AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC--PSILVNRFTMDSQHLISPP 127
           A++E+  +P   +       + D+    +++  C +P     ++      +++ + +  P
Sbjct: 648 ALMEM-GVPILGTSAENVDAAEDRELFDEILEKCCIPRPAGKTVFTRDEALEAANELGYP 706

Query: 128 YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS- 186
            +++P       G+ +   D+ I   +   +       +L+++Y+ G E+    + D   
Sbjct: 707 VLVRPSYVLGGQGMQIAISDKDIIEFMDIINRHVQEHPVLVDKYIMGKEVEVDAVCDGED 766

Query: 187 --LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGI 243
             +      V ++  +S        +S  V PA+ +   I + ++        ++   G+
Sbjct: 767 ILIPGIMEHVERAGIHS-------GDSISVYPAQTLSPKIKRVIEDYTRKLANSLHVIGL 819

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
               F+    + +V+ +E+N +   T     P ++   G    +L   ++
Sbjct: 820 INIQFI--AYNDEVYVIEVNPRSSRT----VPYISKVTGIPIVDLATRVI 863



 Score = 58.6 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 41/230 (17%), Positives = 84/230 (36%), Gaps = 9/230 (3%)

Query: 42  VGLVLAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSK 97
           V  V+   KPD     L G    +  ++      L   ++    +       + D++  K
Sbjct: 74  VKAVIEKEKPDSLLPTLGGQAALNIAMELEESGFLREHDVMLIGTSSSTIKKAEDRLEFK 133

Query: 98  QVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
           + +     PV PS +V   +  ++    I  P V++P       G  + + ++     L+
Sbjct: 134 KTMEKIHEPVAPSEVVTTVKAGLEFVKKIGYPVVLRPAYTLGGSGGGIAENEEEFVEILM 193

Query: 156 QSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHV 214
                +   Q+L+E+ + G  E+   VM DA+   T I V   +       ++  +    
Sbjct: 194 NGLRLSRVGQVLVERCIAGWKEIEYEVMRDANG--TCITVCNMENLDPVGVHTGDSIVVA 251

Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
               +    Y+ ++  A      +  RG     F   P + +   +E+N 
Sbjct: 252 PSQTLGDKEYQMLRTSALNIISELNIRGGCNVQFALHPTTFEYCVIEVNP 301


>gi|91794312|ref|YP_563963.1| carbamoyl-phosphate synthase L chain, ATP-binding [Shewanella
            denitrificans OS217]
 gi|91716314|gb|ABE56240.1| Carbamoyl-phosphate synthase L chain, ATP-binding [Shewanella
            denitrificans OS217]
          Length = 1517

 Score = 74.8 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 83/221 (37%), Gaps = 18/221 (8%)

Query: 57   VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
             LH   G   E     A+     + +    + +     +K  + +      VPV P    
Sbjct: 1018 ALHPGIGFLSESPQFAALCVNNGVNFVGPSVHSMTTMGNKSNAIKTSQEQNVPVVPGSHG 1077

Query: 111  -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI-----PLDLLQSSSWNHGD 164
             +      ++    I  P ++K ++GG   GI V+K+ + +           ++++ +GD
Sbjct: 1078 ILTNAEQAVNVATEIGYPVLLKAVQGGGGKGIQVVKRPEDMIGLFQKTATEAAAAFGNGD 1137

Query: 165  QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
              L E+YV     +   ++ D   +   + +          K    + + +    +P  +
Sbjct: 1138 LYL-EKYVTSLRHIEVQLLRDKFGNTKVLGIRDCSVQRNNQKVIEESGSTM----LPEAL 1192

Query: 224  YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             ++V         A    G    +F+++  + +V+++E+N 
Sbjct: 1193 KQQVLEYTRALGDATDYMGAGTVEFIYNLDANEVYFMEMNT 1233


>gi|42782979|ref|NP_980226.1| carbamoyl phosphate synthase large subunit [Bacillus cereus ATCC
           10987]
 gi|81830987|sp|Q732I3|CARB_BACC1 RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|42738906|gb|AAS42834.1| carbamoyl-phosphate synthase, large subunit [Bacillus cereus ATCC
           10987]
          Length = 1072

 Score = 74.8 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 50/314 (15%), Positives = 114/314 (36%), Gaps = 37/314 (11%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQIDVD---------------------RSVGLV 45
           G ++E + S   G     +L++ G+KV  ++ +                       V  +
Sbjct: 21  GQAAEFDYS---GTQACQSLKEEGYKVILVNSNPATIMTDTATADKVYIEPLTLEFVSRI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   +PD     L G  G +  V+     +LE   +    + + A   + D+   + ++ 
Sbjct: 78  IRKERPDAILPTLGGQTGLNMAVELAKSGVLEECGVEILGTKLSAIEQAEDRDLFRTLMQ 137

Query: 102 SCGVPVCPSILVNRFTMD--SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
               P  PS +++         + I  P +++P       G  +   ++ +   +     
Sbjct: 138 DLNEPTPPSEIIHNLDEAYSFVNEIGYPVIVRPAFTLGGTGGGICHNEEELIEIVTSGLK 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   Q L+E+ + G  E+   VM D++ +   I V   +       ++  +        
Sbjct: 198 HSPVTQCLLEKSIAGCKEIEYEVMRDSNDNA--IVVCNMENIDPVGVHTGDSIVVAPSQT 255

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278
           +    Y+ ++  +    +A+G  G        DP S + + +E+N  P ++  S     +
Sbjct: 256 LSDREYQMLRNTSLRIIRALGIEGGCNVQLALDPYSFQYYVIEVN--PRVSRSS--ALAS 311

Query: 279 AYAGYSFRELLLWM 292
              GY   +L   +
Sbjct: 312 KATGYPIAKLAAKI 325



 Score = 67.5 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 37/283 (13%), Positives = 100/283 (35%), Gaps = 39/283 (13%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ------ 69
           A+++AG++   I         D   S  L    L  +   +++     E  +VQ      
Sbjct: 580 AIKEAGYEAIIINNNPETVSTDFSISDKLYFEPLTIEDVMHIIDLEKPEGVIVQFGGQTA 639

Query: 70  ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHL 123
               A LE   +    + +     + D+ + +  ++  G+P             +     
Sbjct: 640 INLAAKLEEHGVKILGTSLEDLDRAEDRDKFEAALTKLGIPQPVGKTATTVEQAVAIAEE 699

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + ++ + + +   +  +   +    +LI++Y+ G E+    + 
Sbjct: 700 IGYPVLVRPSYVLGGRAMEIVYRQEELLHYMKNAVKVHADHPVLIDRYMVGKEIEVDAIS 759

Query: 184 DAS---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIG 239
           D     +      + ++  +S        +S  V P + +   + +++        + + 
Sbjct: 760 DGENVFIPGIMEHIERAGVHS-------GDSIGVYPPQSLSEKLKEQIIEHTIALGKGLN 812

Query: 240 CRGISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277
             G+    F+      +V+ +E+N       P ++ ++  P  
Sbjct: 813 IVGLLNIQFVV--FENQVYVIEVNPRASRTVPFLSKITGVPMA 853


>gi|333024692|ref|ZP_08452756.1| putative acetyl/propionyl CoA carboxylase alpha subunit
           [Streptomyces sp. Tu6071]
 gi|332744544|gb|EGJ74985.1| putative acetyl/propionyl CoA carboxylase alpha subunit
           [Streptomyces sp. Tu6071]
          Length = 666

 Score = 74.8 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 41/229 (17%), Positives = 80/229 (34%), Gaps = 25/229 (10%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---- 109
            +H  +G   E+           + +      A  L  DK+R+K+ V + GVPV P    
Sbjct: 82  AVHPGYGFLAENAAFARACADAGLVFIGPPADAVDLMGDKIRAKETVKAAGVPVVPGSSG 141

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
           S L +    D+   I  P ++KP  GG   G+ ++ ++  +  ++  +          D 
Sbjct: 142 SGLDDEELADAAREIGMPVLLKPSAGGGGKGMRLVHEEALLAEEIAAARREARSSFGDDT 201

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           LL+E++V     +   V  D   +V  +   +        K             +     
Sbjct: 202 LLVERWVQRPRHIEIQVFADRHGNVIHLGERECSLQRRHQK----LIEEAPSVLLDEATR 257

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLS---------RKVFWLEINV 264
             +   A  A ++ G  G    +F+                 +++E+N 
Sbjct: 258 AAMGEAAVRAARSCGYEGAGTVEFIVPGPDPDAPAGTAPEAYYFMEMNT 306


>gi|332291547|ref|YP_004430156.1| Carbamoyl-phosphate synthase L chain ATP-binding protein
           [Krokinobacter diaphorus 4H-3-7-5]
 gi|332169633|gb|AEE18888.1| Carbamoyl-phosphate synthase L chain ATP-binding protein
           [Krokinobacter diaphorus 4H-3-7-5]
          Length = 483

 Score = 74.8 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 80/220 (36%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +   ++ +      A  +   K+ +K+ V +  +P+ P I  
Sbjct: 79  AIHPGYGFLSENSAFAKAVTEAQMIFIGPEAHAIEIMGSKLAAKEAVKAYDIPMVPGIDE 138

Query: 112 --LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL----DLLQSSSWNHGDQ 165
                         I  P +IK   GG   G+ V++KD  +       + ++++      
Sbjct: 139 AITDVEKAKAIAAEIGYPILIKASAGGGGKGMRVVEKDSELASQMSTAISEATAAFGDGS 198

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+YV     +   VM D   +V  +   +        K             +   + 
Sbjct: 199 VFIEKYVASPRHIEIQVMADNHGNVIHLFERECSIQRRHQK----VVEEAPSVVLTPQLR 254

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +E+ + A    +A   RG    +FL D      ++LE+N 
Sbjct: 255 EEMGQAAIKVAKACNYRGAGTVEFLLDDQLN-FYFLEMNT 293


>gi|322705620|gb|EFY97204.1| carbamoyl-phosphate synthase arginine-specific large chain
           [Metarhizium anisopliae ARSEF 23]
          Length = 1290

 Score = 74.8 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 55/289 (19%), Positives = 105/289 (36%), Gaps = 37/289 (12%)

Query: 4   LMGGISSEREVSLSSGKACASALEDAGF--------------------KVSQIDVDRS-V 42
           L  G + E + S   G     AL++AG                     +V  + V    V
Sbjct: 224 LAIGQAGEFDYS---GSQALKALKEAGVASVLINPNIATIQTNHSLADEVYYLPVTPEYV 280

Query: 43  GLVLAHLKPDLAFNVLHG----NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQ 98
             V+   KPD  F    G    N G     Q + E   +    + +    +S D+    +
Sbjct: 281 SYVIEKEKPDGIFLSFGGQTALNLGVQMQRQGLFEKYGVKVLGTSVRTLEVSEDRDLFAK 340

Query: 99  VVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
            +    +P+  SI V      +D+   +  P +++       LG      ++ +    + 
Sbjct: 341 ALEEINIPIAKSIAVGTVDEALDAAEKVGYPIIVRAAYALGGLGSGFANNEEELR--NMA 398

Query: 157 SSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215
           + S     Q+L+E+ + G  EL   V+ DA+ +   I V   + +   L   + +S  V 
Sbjct: 399 ARSLTLSPQILVEKSLKGWKELEYEVVRDANNN--CITVCNMENFD-PLGIHTGDSIVVA 455

Query: 216 PAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
           P++ +  + Y  ++  A    + +G  G     +   P       +E+N
Sbjct: 456 PSQTLSDEEYHMLRSAAIKIVRHLGVVGECNVQYALQPDGLDYRVIEVN 504



 Score = 59.0 bits (142), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 32/201 (15%), Positives = 76/201 (37%), Gaps = 16/201 (7%)

Query: 73   ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVI 130
            E        +       + D+ +  +++ S GV       +   +        +  P ++
Sbjct: 852  ETGGAKVLGTDPKDIDKAEDRQKFSEILDSIGVDQPAWKELTSVQAAEKFAEEVGYPVLV 911

Query: 131  KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190
            +P    S   + VI+  + +   L  +S+ +    ++I ++++G +    +  DA     
Sbjct: 912  RPSYVLSGAAMTVIRSQEDLKEKLEAASNVSPDHPVVISKFIEGAQE---IDVDAVASKG 968

Query: 191  EIAVPKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRG-----IS 244
            E+ +     +  +    S ++T V  PA +   + + V+ +A    +A    G     I 
Sbjct: 969  ELIIHAVSEHVEQAGVHSGDATLVLPPANLDGAVMERVKDIAKKVAKAWNITGPFNMQII 1028

Query: 245  RSDFLFDPLSRKV--FWLEIN 263
            ++D   DP   +     +E N
Sbjct: 1029 KAD---DPEGGEPALKVIECN 1046


>gi|227515719|ref|ZP_03945768.1| glutamine-hydrolyzing carbamoyl-phosphate synthase [Lactobacillus
           fermentum ATCC 14931]
 gi|227085919|gb|EEI21231.1| glutamine-hydrolyzing carbamoyl-phosphate synthase [Lactobacillus
           fermentum ATCC 14931]
          Length = 1059

 Score = 74.8 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 49/299 (16%), Positives = 100/299 (33%), Gaps = 42/299 (14%)

Query: 22  CASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNV--LHGNFGEDGLVQ- 69
           C  AL+  G++   I         D   S  L    L  +   NV  L    G   +VQ 
Sbjct: 577 CVRALQKLGYEAIVINSNPETVSTDFSVSDKLYFEPLTLENVLNVTDLEQPVG--AIVQF 634

Query: 70  ---------AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--M 118
                    A LE   +    + +     + D+    QV+    +     +        +
Sbjct: 635 GGQTAINLAAGLEANGVKILGTTVADLDAAEDRELFDQVIKDLNLRQPIGMTATTRQGVL 694

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           D+   I  P +++P        + ++     +   L Q++       +L++ Y++G E  
Sbjct: 695 DAAKEIGYPVLVRPSYVLGGKAMEIVYGQAELEDYLNQNADVTGSHPILVDAYLEGAECE 754

Query: 179 CGVMGDAS---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLA 234
              + D     L      +  +  +S        +S  V P + +   +  +++      
Sbjct: 755 VDAICDGERVLLPGIMEHIEHAGVHS-------GDSMAVYPPQSLSGAVKVQIEEATKKL 807

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
             A+ C GI    F+      + + LE+N +   T     P ++   G    +L   ++
Sbjct: 808 AVALKCVGIMNIQFIIH--DGQAYVLEVNPRASRT----VPFLSKVTGIEMAQLATKVI 860



 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 53/314 (16%), Positives = 111/314 (35%), Gaps = 37/314 (11%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQID-------VDRSVGL--------------V 45
           G ++E + S   G     AL++ G++   ++        D+ +                +
Sbjct: 21  GQAAEFDYS---GTQACLALKEEGYETVLVNSNPATIMTDKEIADHVYIEPLTVAALTRI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           L    PD     L G  G +  V      IL+ L I    + + +   + D+ + K+++ 
Sbjct: 78  LRQEAPDALLPTLGGQIGLNLAVALSKTGILDELGIELLGTKLASIDQAEDREKFKELMQ 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G PV  S+ V+     +     +  P +++P       G  +   +  +         
Sbjct: 138 ELGEPVPASLTVSTVEQALAFAKTVGYPVIVRPAFTMGGTGGGLANNEAELTEIAKNGLE 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   Q LIE+ + G  E+   VM DA+ +   +   ++  +     ++  +        
Sbjct: 198 LSPATQCLIEKSIAGYKEIEFEVMRDAADNTMVVCCMEN--FDPVGIHTGDSIVFAPSQT 255

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278
           +    Y+ ++  A     A+   G        DP S     +E+N  P ++  S     +
Sbjct: 256 LADREYQRLRDCALKLISALKIEGGCNVQLALDPNSYDYNVIEVN--PRVSRSS--ALAS 311

Query: 279 AYAGYSFRELLLWM 292
              GY   +L   +
Sbjct: 312 KATGYPIAKLAAKI 325


>gi|255037015|ref|YP_003087636.1| Carbamoyl-phosphate synthase L chain ATP- binding [Dyadobacter
           fermentans DSM 18053]
 gi|254949771|gb|ACT94471.1| Carbamoyl-phosphate synthase L chain ATP- binding [Dyadobacter
           fermentans DSM 18053]
          Length = 501

 Score = 74.8 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 78/220 (35%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      ++   + +      +  +   K+ +K   S   +P+ P    
Sbjct: 79  AIHPGYGFLSENAGFAQKVKDAGLIFIGPSPESIEVMGSKLAAKHAASKYNIPMVPGTPD 138

Query: 114 NRFTMDSQHLI----SPPYVIKPLKGGSSLGIIVIKK----DQSIPLDLLQSSSWNHGDQ 165
                D    I      P +IK   GG   G+ V++     D+ +   + ++ +      
Sbjct: 139 AIDNRDEAKRIASSIGYPVLIKASAGGGGKGMRVVENEAEFDEQMDRAVSEAQAAFGDGS 198

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+Y+     +   V+GD   ++  +   +        K             I   I 
Sbjct: 199 VFIEKYITSPKHVEIQVLGDQHGNIIHLFERECSVQRRHQK----VVEEAPSISITPKIR 254

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +E+ R A    ++    G    +F+ D   +  ++LE+N 
Sbjct: 255 EEMGRCAVDVARSCHYYGAGTVEFIMDE-DKNFYFLEMNT 293


>gi|222546879|gb|ACM66944.1| AccA1 [Streptomyces toxytricini]
          Length = 673

 Score = 74.8 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 85/221 (38%), Gaps = 17/221 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---- 109
            +H  +G   E+           + +      A +L  DK+R+K+ V + GVPV P    
Sbjct: 77  AVHPGYGFLAENAAFAQACTEAGLVFIGPPASAISLMGDKIRAKETVRAAGVPVVPGSSG 136

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
           S L +   +++   I  P ++KP  GG   G+ +++    +  ++  +          D 
Sbjct: 137 SGLSDAELVEAAEKIGMPVLLKPSAGGGGKGMRLVRDGAVLAEEIAAARREARSSFGDDT 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           LL+E++VD    +   VM DA  +V  +   +        K             +   I 
Sbjct: 197 LLVERWVDRPRHIEIQVMADAHGNVVHLGERECSLQRRHQK----VIEEAPSVLLTPQIR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLS-RKVFWLEINV 264
             +   A  A +A G  G    +F+         +++E+N 
Sbjct: 253 AAMGAAAVEAARACGYVGAGTVEFIVPGGDPSSYYFMEMNT 293


>gi|218188499|gb|EEC70926.1| hypothetical protein OsI_02498 [Oryza sativa Indica Group]
          Length = 878

 Score = 74.8 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 39/203 (19%), Positives = 77/203 (37%), Gaps = 13/203 (6%)

Query: 70  AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS---ILVNRFTMDSQHLISP 126
             L+ L +    + + A   + D+   KQ +   G+   PS     +      ++ +   
Sbjct: 17  GALDRLGVRLIGASLPAIRAAEDRQLFKQAMDRIGLKTPPSGIGTTLEECISIAEDIGEF 76

Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDA 185
           P +++P       G  +               + +H  Q+L+E+ + G  E    VM D 
Sbjct: 77  PLIVRPAFTLGGTGGGIAYNRAEFEDICRAGLAASHTQQVLVEKSLLGWKEYELEVMRDM 136

Query: 186 SLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIG--CR 241
           + +V  I   ++ D           +S  V PA+ +    Y+ ++  +    + IG  C 
Sbjct: 137 ADNVVIICSIENIDPMGVHT----GDSITVAPAQTLTDKEYQRLRDYSVAIIREIGVECG 192

Query: 242 GISRSDFLFDPLSRKVFWLEINV 264
           G S   F  +P   +V  +E+N 
Sbjct: 193 G-SNVQFAVNPADGEVMVIEMNP 214


>gi|126727097|ref|ZP_01742934.1| acetyl-CoA carboxylase [Rhodobacterales bacterium HTCC2150]
 gi|126703525|gb|EBA02621.1| acetyl-CoA carboxylase [Rhodobacterales bacterium HTCC2150]
          Length = 448

 Score = 74.8 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 77/220 (35%), Gaps = 18/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---- 109
            +H  +G   E+     ILE  +I +         L  DK+ +K  +   GVP  P    
Sbjct: 77  AVHPGYGFMSENANFVQILEDHDIKFIGPTAAHIRLMGDKITAKDTMKKLGVPCVPGSAG 136

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
            +       +       P +IK   GG   G+ +      +      + +        D+
Sbjct: 137 GVPDYAAAKEVVKETGFPVIIKATAGGGGKGMKLANSADELETAFRTARAEGKSNFGNDE 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+Y+     +   V GD       +        S + ++  +      PA I  +I 
Sbjct: 197 VYIEKYLGRPRHIEIQVFGDGKGKAVHLGERD---CSLQRRHQKVFEEAPGPA-ISPEIR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             + +    A   IG  G    +FL+     + F++E+N 
Sbjct: 253 ARIGKTCADAMAEIGYAGAGTIEFLY--EDGEFFFIEMNT 290


>gi|270292993|ref|ZP_06199204.1| carbamoyl-phosphate synthase, large subunit [Streptococcus sp.
           M143]
 gi|270278972|gb|EFA24818.1| carbamoyl-phosphate synthase, large subunit [Streptococcus sp.
           M143]
          Length = 1058

 Score = 74.8 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 26/228 (11%), Positives = 77/228 (33%), Gaps = 19/228 (8%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYV 129
           L    +    + +     + D+   +Q +    +P  P            +   I  P +
Sbjct: 646 LAKAGVTILGTQVADLDRAEDRDLFEQALKDLDIPQPPGQTATNEEEAVLAARKIGFPVL 705

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS--- 186
           ++P        + +++ ++ +   +  +   +    +L++ Y+ G E     + D     
Sbjct: 706 VRPSYVLGGRAMEIVENEEDLRSYMRTAVKASPDHPVLVDSYIVGQECEVDAISDGENVL 765

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISR 245
           +      + ++  +S        +S  V P + +   + + +          + C G+  
Sbjct: 766 IPGIMEHIERAGVHS-------GDSMAVYPPQTLSQKVQETIADYTKRLAIGLNCLGMMN 818

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
             F+      KV+ +E+N +   T     P ++        ++   ++
Sbjct: 819 IQFVI--KDEKVYVIEVNPRASRT----VPFLSKVTNIPMAQVATKLI 860



 Score = 70.2 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 54/302 (17%), Positives = 115/302 (38%), Gaps = 37/302 (12%)

Query: 20  KACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNVL 58
           +AC S L++ G++V  ++        D+ +                +L   +PD     L
Sbjct: 32  QACLS-LKEEGYEVVLVNSNPATIMTDKEIADKVYIEPITLEFVIRILRKERPDALLPTL 90

Query: 59  HGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
            G  G +  ++     IL+ L +    + + A   + D+   KQ++     P+  S +VN
Sbjct: 91  GGQTGLNMAMELSKNGILDELGVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIVN 150

Query: 115 --RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                +     I  P +++P       G  +   ++ +          +   Q LIE+ +
Sbjct: 151 TVEEAVAFAASIGYPVIVRPAFTLGGTGGGMCANEEELREIAENGLKLSPVTQCLIERSI 210

Query: 173 DG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRL 230
            G  E+   VM D++ +   + V   + +   +   + +S    PA+ +     + ++  
Sbjct: 211 AGFKEIEYEVMRDSADNA--LVVCNMENFD-PVGIHTGDSIVFAPAQTMSDYENQMLRDA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    +A+   G        DP S K + +E+N  P ++  S     +   GY   +L  
Sbjct: 268 SLSIIRALKIEGGCNVQLALDPHSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325


>gi|258406428|ref|YP_003199170.1| pyruvate carboxylase [Desulfohalobium retbaense DSM 5692]
 gi|257798655|gb|ACV69592.1| Carbamoyl-phosphate synthase L chain ATP- binding protein
           [Desulfohalobium retbaense DSM 5692]
          Length = 1229

 Score = 74.8 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 38/241 (15%), Positives = 87/241 (36%), Gaps = 30/241 (12%)

Query: 47  AHLKPDLAFN--------VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           A+L  DL  N         +H  +G   ED           + +         +  +K++
Sbjct: 71  AYLDIDLIINRAKARGVKAIHPGWGFASEDEAFPEKCRAAGLVFIGPPSRPMHILGNKVQ 130

Query: 96  SKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
            + +    GVPV P     + ++     ++  I  P ++K   GG   GI  + +   + 
Sbjct: 131 VRNLAKEHGVPVVPGSDGAVSIDEARRIAED-IDFPIMLKAEGGGGGRGIYEVYQQSELE 189

Query: 152 LDLLQSSSWNH----GDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
               ++SS         +L +E+ +     +   V+ D   +V        D     ++ 
Sbjct: 190 RAFAKASSLAQASFGNPRLYVEKLLTSIRHIEIQVIADQHGNVFAF-----DERDCTVQR 244

Query: 207 SSLNSTHVLPAK---IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
           +      + P+    +  ++ + ++  +     A+G   ++  +FL D      + +E+N
Sbjct: 245 NHQKLVEITPSPWPVMTEELRERLKEYSRRLVSAVGYHSLATVEFLVDMEGN-PYLIEVN 303

Query: 264 V 264
            
Sbjct: 304 T 304


>gi|206976709|ref|ZP_03237613.1| carbamoyl-phosphate synthase, large subunit [Bacillus cereus
           H3081.97]
 gi|217961307|ref|YP_002339875.1| carbamoyl phosphate synthase large subunit [Bacillus cereus AH187]
 gi|222097332|ref|YP_002531389.1| carbamoyl phosphate synthase large subunit [Bacillus cereus Q1]
 gi|226700921|sp|B7HLM0|CARB_BACC7 RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|254813558|sp|B9IVW3|CARB_BACCQ RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|206745019|gb|EDZ56422.1| carbamoyl-phosphate synthase, large subunit [Bacillus cereus
           H3081.97]
 gi|217067322|gb|ACJ81572.1| carbamoyl-phosphate synthase, large subunit [Bacillus cereus AH187]
 gi|221241390|gb|ACM14100.1| carbamoyl-phosphate synthase [Bacillus cereus Q1]
          Length = 1072

 Score = 74.8 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 50/314 (15%), Positives = 114/314 (36%), Gaps = 37/314 (11%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQIDVD---------------------RSVGLV 45
           G ++E + S   G     +L++ G+KV  ++ +                       V  +
Sbjct: 21  GQAAEFDYS---GTQACQSLKEEGYKVILVNSNPATIMTDTATADKVYIEPLTLEFVSRI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   +PD     L G  G +  V+     +LE   +    + + A   + D+   + ++ 
Sbjct: 78  IRKERPDAILPTLGGQTGLNMAVELAKSGVLEECGVEILGTKLSAIEQAEDRDLFRTLMQ 137

Query: 102 SCGVPVCPSILVNRFTMD--SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
               P  PS +++         + I  P +++P       G  +   ++ +   +     
Sbjct: 138 DLNEPTPPSEIIHNLDEAYGFVNEIGYPVIVRPAFTLGGTGGGICHNEEELIEIVTSGLK 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   Q L+E+ + G  E+   VM D++ +   I V   +       ++  +        
Sbjct: 198 HSPVTQCLLEKSIAGCKEIEYEVMRDSNDNA--IVVCNMENIDPVGVHTGDSIVVAPSQT 255

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278
           +    Y+ ++  +    +A+G  G        DP S + + +E+N  P ++  S     +
Sbjct: 256 LSDREYQMLRNTSLRIIRALGIEGGCNVQLALDPYSFQYYVIEVN--PRVSRSS--ALAS 311

Query: 279 AYAGYSFRELLLWM 292
              GY   +L   +
Sbjct: 312 KATGYPIAKLAAKI 325



 Score = 65.5 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 37/283 (13%), Positives = 100/283 (35%), Gaps = 39/283 (13%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ------ 69
           A+++AG++   I         D   S  L    L  +   +++     E  +VQ      
Sbjct: 580 AIKEAGYEAIIINNNPETVSTDFSISDKLYFEPLTIEDVMHIIDLEKPEGVIVQFGGQTA 639

Query: 70  ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHL 123
               A LE   +    + +     + D+ + +  ++  G+P             +     
Sbjct: 640 INLAAKLEEHGVKILGTSLEDLDRAEDRDKFEAALTKLGIPQPVGKTATTVEQAVAIAEE 699

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + ++ + + +   +  +   +    +LI++Y+ G E+    + 
Sbjct: 700 IGYPVLVRPSYVLGGRAMEIVYRQEELLHYMKNAVKVHADHPVLIDRYMVGKEIEVDAIS 759

Query: 184 DAS---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIG 239
           D     +      + ++  +S        +S  V P + +   + +++        + + 
Sbjct: 760 DGENVFIPGIMEHIERAGVHS-------GDSIGVYPPQSLSEKLKEQIIEHTIALGKGLN 812

Query: 240 CRGISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277
             G+    F+      +V+ +E+N       P ++ ++  P  
Sbjct: 813 IVGLLNIQFVVFK--DQVYVIEVNPRASRTVPFLSKITGVPMA 853


>gi|134109861|ref|XP_776480.1| hypothetical protein CNBC5340 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50259156|gb|EAL21833.1| hypothetical protein CNBC5340 [Cryptococcus neoformans var.
           neoformans B-3501A]
          Length = 733

 Score = 74.8 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 34/200 (17%), Positives = 74/200 (37%), Gaps = 15/200 (7%)

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVI 130
             + +      A      K  SK+++ + GVP  P       + D+          P +I
Sbjct: 165 AGLIFIGPSAEAIKSMGSKRESKEIMVAAGVPCVPGYHGADQSYDALLKGSQQTGYPLII 224

Query: 131 KPLKGGSSLGIIVIKKD----QSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDA 185
           KP  GG   G+ +++        +     ++      D++L+E++++    +   V GD 
Sbjct: 225 KPTHGGGGKGMRIVRDPLTLQDELLSAQREALKSFGNDEVLLERWLEKPRHVEVQVFGDQ 284

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGIS 244
             +   +           ++          PA  +   + ++    A  A +AI   G  
Sbjct: 285 FGNCVALWE-----RDCSVQRRHQKIIEEAPAPGLSPALKRDFAEKAVAAAKAINYVGAG 339

Query: 245 RSDFLFDPLSRKVFWLEINV 264
             +F+ D  + + F++E+N 
Sbjct: 340 TVEFIMDAETGEHFFMEMNT 359


>gi|324327785|gb|ADY23045.1| carbamoyl phosphate synthase large subunit [Bacillus thuringiensis
           serovar finitimus YBT-020]
          Length = 1072

 Score = 74.8 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 53/315 (16%), Positives = 119/315 (37%), Gaps = 39/315 (12%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQIDVD---------------------RSVGLV 45
           G ++E + S   G     +L++ G+KV  ++ +                       V  +
Sbjct: 21  GQAAEFDYS---GTQACQSLKEEGYKVILVNSNPATIMTDTATADKVYIEPLTLEFVSRI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   +PD     L G  G +  V+     +LE   +    + + A   + D+   + ++ 
Sbjct: 78  IRKERPDAILPTLGGQTGLNMAVELAKSGVLEECGVEILGTKLSAIEQAEDRDLFRTLMQ 137

Query: 102 SCGVPVCPSILVNRFTMD--SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
               P  PS +++         + I  P +++P       G  +   ++ +   +     
Sbjct: 138 DLNEPTPPSEIIHNLDEAYSFVNEIGYPVIVRPAFTLGGTGGGICHNEEELIEIVTSGLK 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   Q L+E+ + G  E+   VM D++ +   I V   +       ++  +S  V P++
Sbjct: 198 HSPVTQCLLEKSIAGCKEIEYEVMRDSNDNA--IVVCNMENIDPVGVHT-GDSIVVAPSQ 254

Query: 219 -IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
            +    Y+ ++  +    +A+G  G        DP S + + +E+N  P ++  S     
Sbjct: 255 TLSDREYQMLRNTSLRIIRALGIEGGCNVQLALDPYSFQYYVIEVN--PRVSRSS--ALA 310

Query: 278 AAYAGYSFRELLLWM 292
           +   GY   +L   +
Sbjct: 311 SKATGYPIAKLAAKI 325



 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 37/283 (13%), Positives = 100/283 (35%), Gaps = 39/283 (13%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ------ 69
           A+++AG++   I         D   S  L    L  +   +++     E  +VQ      
Sbjct: 580 AIKEAGYEAIIINNNPETVSTDFSISDKLYFEPLTIEDVMHIIDLEKPEGVIVQFGGQTA 639

Query: 70  ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHL 123
               A LE   +    + +     + D+ + +  ++  G+P             +     
Sbjct: 640 INLAAKLEEHGVKILGTSLEDLDRAEDRDKFEAALTKLGIPQPVGKTATTVEQAVAIAEE 699

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + ++ + + +   +  +   +    +LI++Y+ G E+    + 
Sbjct: 700 IGYPVLVRPSYVLGGRAMEIVYRQEELLHYMKNAVKVHADHPVLIDRYMVGKEIEVDAIS 759

Query: 184 DAS---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIG 239
           D     +      + ++  +S        +S  V P + +   + +++        + + 
Sbjct: 760 DGENVFIPGIMEHIERAGVHS-------GDSIGVYPPQSLSEKLKEQIIEHTIALGKGLN 812

Query: 240 CRGISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277
             G+    F+      +V+ +E+N       P ++ ++  P  
Sbjct: 813 IVGLLNIQFVV--FEDQVYVIEVNPRASRTVPFLSKITGVPMA 853


>gi|149202678|ref|ZP_01879650.1| methylcrotonyl-CoA carboxylase, alpha subunit [Roseovarius sp.
           TM1035]
 gi|149143960|gb|EDM31994.1| methylcrotonyl-CoA carboxylase, alpha subunit [Roseovarius sp.
           TM1035]
          Length = 646

 Score = 74.8 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 38/204 (18%), Positives = 71/204 (34%), Gaps = 20/204 (9%)

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD----SQHLISPPYVI 130
             + +      A      K  +K ++   GVPV P         +    +   I  P +I
Sbjct: 98  AGLVFIGPSARAIRAMGLKDAAKVLMEQAGVPVVPGYHGANQDPEHLAGAAEAIGYPVLI 157

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQLLIEQYV-DGIELTCGVMGDA 185
           K + GG   G+ ++++ +     L  +            +LIE+Y+     +   V GD 
Sbjct: 158 KAVAGGGGKGMRLVEQPEHFADALESAQGEARTAFGNAAVLIEKYIQKPRHIEVQVFGDG 217

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGIS 244
           S  V              L+          PA  +   +   + + A  A +AIG  G  
Sbjct: 218 SRAV------HLFERDCSLQRRHQKVIEEAPAPGMTEAMRAAMGQAAVRAAEAIGYSGAG 271

Query: 245 RSDFLFDPLSR----KVFWLEINV 264
             +F+ D        + +++E+N 
Sbjct: 272 TVEFIVDGSDGLRADRFWFMEMNT 295


>gi|86357841|ref|YP_469733.1| propionyl-CoA carboxylase alpha chain protein [Rhizobium etli CFN
           42]
 gi|86281943|gb|ABC91006.1| propionyl-CoA carboxylase alpha chain protein [Rhizobium etli CFN
           42]
          Length = 669

 Score = 74.8 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 80/220 (36%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H  +G   E     A LE   I +      A     DK+ SK+  ++ GV   P  L 
Sbjct: 77  AVHPGYGFLSERASFCAELEKQGIVFIGPKPKAIMAMGDKIESKKFANAAGVFTVPGHLG 136

Query: 113 VNRFTMDSQHL---ISPPYVIKPLKGGSSLGIIVIKKDQS----IPLDLLQSSSWNHGDQ 165
           V      ++ +   I  P +IK   GG   G+ +   +            ++ S    D+
Sbjct: 137 VIEDAAHAETIAGGIGYPVMIKASAGGGGKGMRIAWNEAEVRDGFERARSEAKSSFGDDR 196

Query: 166 LLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE++ V+   +   V+ DA  +V  +   +        K     +       +     
Sbjct: 197 VFIEKFVVEPRHIEIQVLADAHGNVVYLGERECSIQRRNQK----VAEEAPSPFLDEKTR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K +   +    +A+  +     +F+ D   R  ++LE+N 
Sbjct: 253 KAMGEQSVALAKAVDYQSAGTVEFIVD-RDRNFYFLEMNT 291


>gi|71909549|ref|YP_287136.1| acetyl-CoA carboxylase biotin carboxylase subunit [Dechloromonas
           aromatica RCB]
 gi|71849170|gb|AAZ48666.1| acetyl-CoA carboxylase carboxyltransferase subunit alpha
           [Dechloromonas aromatica RCB]
          Length = 452

 Score = 74.8 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 77/222 (34%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H  +G   E+      +E     +         L  DK+ +K  +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAERVETSGFVFIGPKAETIRLMGDKVSAKDAMKVAGVPCVPGSEG 136

Query: 113 ----VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
                 +  +     +  P +IK   GG   G+ V+  + ++   +     ++ S+    
Sbjct: 137 ELPDDPKEIVKIARAVGYPVIIKAAGGGGGRGMRVVHTEAALVNAVQMTKQEAGSFFGNP 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+Y++    +   V+ D       +            K          PA  I   
Sbjct: 197 AVYMEKYLENPRHVEIQVLADQHGSAIYLGERDCSMQRRHQK-----VIEEAPAPHIAPR 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +   +      A + IG RG    +FL+   + + +++E+N 
Sbjct: 252 LINRIGERCAEACRKIGYRGAGTFEFLY--ENNEFYFIEMNT 291


>gi|260434913|ref|ZP_05788883.1| phosphoribosylglycinamide formyltransferase 2 [Synechococcus sp. WH
           8109]
 gi|260412787|gb|EEX06083.1| phosphoribosylglycinamide formyltransferase 2 [Synechococcus sp. WH
           8109]
          Length = 403

 Score = 74.8 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 39/247 (15%), Positives = 91/247 (36%), Gaps = 30/247 (12%)

Query: 32  KVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAI--LELLEIPYTHSGILASAL 89
           +V  +    ++  V+ H +PD+    +         V A+  LE   I        A+A+
Sbjct: 61  EVLPMTDADALLEVVRHHQPDVVIPEIEAL-----AVHALAELEQEGITVI-PTARATAV 114

Query: 90  SMDKMRSKQVVSS-CGVPVCPSILVNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           +M++ R + + +   G+                    +  P V+KP+   S  G  V+  
Sbjct: 115 TMNRDRIRDLAADELGLRTARFAYAASAEELTAVAEPLGWPVVVKPVMSSSGKGQSVVTC 174

Query: 147 DQSIPLD--LLQSSSWNHGDQLLIEQYVDGIELTCGVM-----GDASLDVTEIAVPKSDF 199
              +P       + +     Q+++E+++   +L   ++        +L    I   + + 
Sbjct: 175 ADDLPKAWEAAMAGARGTSTQVIVEEFLH-FDLEITLLTIRQRNGETLFCAPIG-HEQEG 232

Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
             Y+  +         PA++     ++ Q +A      +G  G+   +F       +V +
Sbjct: 233 GDYQCSW--------QPAQLTDQQLRQAQAMAKTVTNNLGGAGLFGVEFFL--CGDEVIF 282

Query: 260 LEINVQP 266
            E++ +P
Sbjct: 283 SELSPRP 289


>gi|84490007|ref|YP_448239.1| hypothetical protein Msp_1215 [Methanosphaera stadtmanae DSM 3091]
 gi|84373326|gb|ABC57596.1| partially conserved hypothetical protein, predicted
           carbamoyl-phosphate synthase, large chain
           [Methanosphaera stadtmanae DSM 3091]
          Length = 382

 Score = 74.8 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 47/252 (18%), Positives = 97/252 (38%), Gaps = 22/252 (8%)

Query: 25  ALEDAGFK-VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGED------GLVQAILELLEI 77
            L+ A +  +    +D+ + + +     D    ++    G D      G ++  LE + I
Sbjct: 36  NLDLADYNYIVPRGMDKPMEIAIKE-DVDAVIPLI----GIDPPLPDVGKMKDELEEIGI 90

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGS 137
           P   S    ++L+ DK  +K+++    +       +N+           P V+K  +G  
Sbjct: 91  PVIASSYKTASLAADKYNTKKLLKENNIKTPQFHALNKPYNIDDIEKDLPIVLKTPEGQG 150

Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKS 197
             G+ V      I      +   ++   +  E+YV+G E++  V+   +  V    V K 
Sbjct: 151 GTGVKVAVNRDDI------NEFLDNKSNVFTEEYVEGFEVSIEVLRWNNESVALTPVYKG 204

Query: 198 DFY---SYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
           D     ++ LK        +      +   ++++ LA      +G  G    D L D  S
Sbjct: 205 DTTLNGTHPLKKIKQAPLEIEGID-NVAHNRDIRLLAQRIANLVGLDGTMDIDILHDNNS 263

Query: 255 RKVFWLEINVQP 266
           +  + +E+N +P
Sbjct: 264 KLDYVIELNTRP 275


>gi|13476413|ref|NP_107983.1| 3-methylcrotonyl-CoA carboxylase biotin-containing subunit
           [Mesorhizobium loti MAFF303099]
 gi|14027174|dbj|BAB54128.1| 3-methylcrotonyl-CoA carboxylase biotin-containing subunit
           [Mesorhizobium loti MAFF303099]
          Length = 694

 Score = 74.8 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 37/204 (18%), Positives = 71/204 (34%), Gaps = 19/204 (9%)

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM----DSQHLISPPYVI 130
             + +      +      K  +K+++   GVPV P        +         I  P +I
Sbjct: 138 AGLTFIGPSAASIRAMGLKDAAKRLMEKAGVPVVPGYHGEAQEIVLLASKAREIGYPVLI 197

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGDQLLIEQYVD-GIELTCGVMGDA 185
           K   GG   G+  ++        L     ++ +    D++L+E+YVD    +   V GD 
Sbjct: 198 KARAGGGGKGMRRVEHPDDFSEALSSARREAKAAFGDDRVLVEKYVDKPRHIEVQVFGDN 257

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGIS 244
             +   +            +          PA  +   + K +   A  A +AIG  G  
Sbjct: 258 FGNAVHLYE-----RDCSAQRRHQKVIEEAPAPGMTPALRKAMTEAAVKAAKAIGYSGAG 312

Query: 245 RSDFLFDPLSR----KVFWLEINV 264
             +F+ D        + +++E+N 
Sbjct: 313 TIEFIVDASQGLKPDRFWFMEMNT 336


>gi|300726773|ref|ZP_07060203.1| phosphoribosylglycinamide formyltransferase 2 [Prevotella bryantii
           B14]
 gi|299775886|gb|EFI72466.1| phosphoribosylglycinamide formyltransferase 2 [Prevotella bryantii
           B14]
          Length = 393

 Score = 74.8 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 46/276 (16%), Positives = 91/276 (32%), Gaps = 36/276 (13%)

Query: 33  VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
            S +D D ++  V+   +PD+    +     E         L +       ++ SA +++
Sbjct: 48  FSMLDGD-ALTAVVNKHQPDIIVPEIEAIRTE--------RLFDFEKQGVQVVPSARAVN 98

Query: 93  -----KMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVIK 145
                +          G+          F     +   I  P V+KPL   S  G   + 
Sbjct: 99  YTMNRRAIRDLASQELGLRTAKYFYAKTFDEFKKAADEIGFPCVVKPLMSSSGHGQSYVH 158

Query: 146 KDQSIPLDLLQSSSWNHGD--QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSY 202
            D  +      +     GD  +++IE+++D   E T   +   +L               
Sbjct: 159 NDDELKEAFKDAMEEGRGDVKEVIIEEFIDFDSEFTLLTVTQKNLPTLFCPPIG------ 212

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
            ++         +P +I  +  K  + +A    +A+   GI   +F       +V + E+
Sbjct: 213 HIQKGGDYRESWMPYQISEEALKTAEHMADEVTKALTGYGIWGVEFFLTKQ-GEVIFSEL 271

Query: 263 NVQP---GM------TPVSIFPEMAAY-AGYSFREL 288
           + +P   GM      T +S F        G     +
Sbjct: 272 SPRPHDTGMVTLSHCTNLSEFELHFRAVMGLPIPAI 307


>gi|115379472|ref|ZP_01466569.1| argininosuccinate lyase domain protein [Stigmatella aurantiaca
           DW4/3-1]
 gi|115363523|gb|EAU62661.1| argininosuccinate lyase domain protein [Stigmatella aurantiaca
           DW4/3-1]
          Length = 366

 Score = 74.8 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 43/256 (16%), Positives = 90/256 (35%), Gaps = 32/256 (12%)

Query: 67  LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ--HLI 124
            V AI     + Y       +    +K  ++ ++ + G+P     ++      +Q    +
Sbjct: 38  TVAAIAARHGLRYLQPRAAQA--CHNKHEARALLRAAGLPGPEFHVIASEAEAAQLAQTV 95

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLD-------LLQSSSWNHGDQLLIEQYVDGIEL 177
             P V+KP     S G+  +   + +                 +   ++L+E +++G E 
Sbjct: 96  RFPCVVKPPAESGSTGVRRVDTPEELLAHFRSLHSRAANERGQSLHGEVLVESFLEGPEF 155

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           +   M  A      + V  +  Y     Y      H  PA +P +  + ++        A
Sbjct: 156 SVETMTLADGTTHVLGV--TQKYLSAPPYFVEMG-HDFPADLPPERRRALEEAVLAGLAA 212

Query: 238 IGCR-GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYA-GYS-FRELLLWMV- 293
           +G   G + ++  F P       +EIN +       + PE+   + G      +L  M+ 
Sbjct: 213 VGFDFGPAHTEIRFTPAG--PVIIEINPR---LAGGMIPELVRLSTGVDLLSAMLDQMLG 267

Query: 294 ---------EDASCLR 300
                    +D +C+R
Sbjct: 268 RPVDLTHTRQDVACIR 283


>gi|51574084|gb|AAU07976.1| VanA [Enterococcus faecalis]
          Length = 96

 Score = 74.8 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 28/96 (29%), Positives = 49/96 (51%), Gaps = 7/96 (7%)

Query: 165 QLLIEQYVDGIELTCGVMGD-ASLDVTEIAVPKSDFYSY------ELKYSSLNSTHVLPA 217
           ++LIEQ V G E+ C V+G+ A+L V E+   +  +  +      E +  S N+   +PA
Sbjct: 1   KILIEQAVSGCEVGCAVLGNSAALVVGEVDQIRLQYGIFRIHQEVEPEKGSENAVITVPA 60

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
            +  +    +Q  A   ++A+GCRG++R D      
Sbjct: 61  DLSAEERGRIQETAKKIYKALGCRGLARVDMFLQDN 96


>gi|300741565|ref|ZP_07071586.1| carbamoyl-phosphate synthase, large subunit [Rothia dentocariosa
           M567]
 gi|300380750|gb|EFJ77312.1| carbamoyl-phosphate synthase, large subunit [Rothia dentocariosa
           M567]
          Length = 1114

 Score = 74.8 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 50/288 (17%), Positives = 109/288 (37%), Gaps = 36/288 (12%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI---------DVD------------RSVGLV 45
           G ++E + S   G      L++ G +V  +         D +              +  +
Sbjct: 21  GQAAEFDYS---GTQALRVLKEEGVRVVLVNSNPATIMTDPEFADATYIEPITPEVIAKI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   +PD     L G    +  +    Q  L   ++    + I A  L  D+   K VV 
Sbjct: 78  IEKERPDAILPTLGGQTALNAAIALDKQGTLREYDVELIGANIEAINLGEDREAFKGVVE 137

Query: 102 SCGVPVCPSILVNR--FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G     SI+V+     +++   +  P V++P      LG  +   ++ +         
Sbjct: 138 RAGGESARSIIVHSMPEALEAAKELGYPMVVRPSFTMGGLGSGMAYNEEDLYRIAGAGIQ 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA- 217
           ++   ++L+E+ + G  E    +M D + +V  +   ++      +   + +S  V PA 
Sbjct: 198 YSPTSEVLLEESILGWKEYELEMMRDKNDNVVVVCSIENFD---PVGVHTGDSITVAPAL 254

Query: 218 KIPLDIYKEVQRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
            +    Y++++ +A    + +G   G     F  DP + ++  +E+N 
Sbjct: 255 TLTDREYQKLRDIAINVIREVGVDTGGCNIQFAVDPKTGRIIVIEMNP 302



 Score = 53.6 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 32/199 (16%), Positives = 76/199 (38%), Gaps = 14/199 (7%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--QHLISPPYV 129
           L+   +P   +   A  L+ D+    +V+   G+    +     F         I  P +
Sbjct: 655 LKDAGVPILGTTPEAIDLAEDRGEFARVLEEGGLISPKNGTAYTFEGAKRVADEIGYPVL 714

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDAS-- 186
           ++P       G+ ++  + ++   L  ++  +     LI++++ D IE+    + D +  
Sbjct: 715 VRPSYVLGGRGMEIVYDEANLARYLENATEVSPSQPALIDKFLEDAIEIDVDALFDGTEL 774

Query: 187 -LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
            L      + ++  +S        +S  + P  +  D+  +V+       +  G RG+  
Sbjct: 775 YLGGVMEHIEEAGIHS------GDSSCTLPPITLGPDVIAKVKEATEAIARGTGVRGLIN 828

Query: 246 SDFLFDPLSRKVFWLEINV 264
             F +   +  +F +E N 
Sbjct: 829 IQFAYVSEN--LFVIEANP 845


>gi|294672957|ref|YP_003573573.1| phosphoribosylglycinamide formyltransferase 2 [Prevotella
           ruminicola 23]
 gi|294473544|gb|ADE82933.1| phosphoribosylglycinamide formyltransferase 2 [Prevotella
           ruminicola 23]
          Length = 401

 Score = 74.8 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 50/276 (18%), Positives = 95/276 (34%), Gaps = 35/276 (12%)

Query: 33  VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
            S +D D ++  V+   KPD+    +     E         L +       ++ SA +++
Sbjct: 48  FSMLDGD-ALEAVVNKHKPDIIVPEIEAIRTE--------RLFKFEEQGIQVVPSARAVN 98

Query: 93  -----KMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVIK 145
                +          G+          F     +   I  P V+KPL   S  G   + 
Sbjct: 99  FTMNRRAIRDLASKELGLRTAKYFYAKTFDEFKAAADEIGFPCVVKPLMSSSGHGQSYVH 158

Query: 146 KDQSIPLDLLQSSSWNHGD--QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSY 202
            D  +     ++   + GD  +++IE+++D   E T   +   +   T    P       
Sbjct: 159 NDDELEQAFKEAMEGSRGDVKEVIIEEFIDFDSEFTLLTVTQKNGRPTLFCPPIG----- 213

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
            ++ +        P KI  +  K+ Q +A    +A+   GI   +F       +V + E+
Sbjct: 214 HVQKAGDYRESWQPYKISDEALKQAQIMADKVTKALTGAGIWGVEFFLTKQ-GEVIFSEL 272

Query: 263 NVQP---GM------TPVSIFPEMAAY-AGYSFREL 288
           + +P   GM      T +S F        G     +
Sbjct: 273 SPRPHDTGMVTLGHTTNLSEFELHFRAVMGMPIPAI 308


>gi|289642050|ref|ZP_06474203.1| Carbamoyl-phosphate synthase L chain ATP-binding [Frankia symbiont
           of Datisca glomerata]
 gi|289508123|gb|EFD29069.1| Carbamoyl-phosphate synthase L chain ATP-binding [Frankia symbiont
           of Datisca glomerata]
          Length = 318

 Score = 74.8 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 37/219 (16%), Positives = 77/219 (35%), Gaps = 17/219 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   ED     I    ++ +  +     A   DK  ++ ++   G+P+ P  L 
Sbjct: 77  AVHPGYGFLSEDPDFAEICAANDLVFIGTPAQVMACLGDKSTARTLMREAGLPLLPGSLE 136

Query: 114 NRFTMDSQHLI----SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
               +D    +      P +IK   GG   G+ V+++         ++ +        D+
Sbjct: 137 VPGDVDEAARLAATVGYPVIIKAAAGGGGNGMTVVREPGGFARAFAETRAVARAVFGDDR 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+Y++    +   ++ D       +   +        K           + +     
Sbjct: 197 VYVERYLERARHVEVQILVDDQGTGIHLGTRECSVQRRHQKLL----EEAPASGLDPQQA 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
             + R A       G RG    +FL D   R  +++EIN
Sbjct: 253 AVIARDAVHGALTAGFRGAGTVEFLVDADGRH-YFMEIN 290


>gi|222112118|ref|YP_002554382.1| acetyl-CoA carboxylase, biotin carboxylase [Acidovorax ebreus TPSY]
 gi|221731562|gb|ACM34382.1| acetyl-CoA carboxylase, biotin carboxylase [Acidovorax ebreus TPSY]
          Length = 449

 Score = 74.8 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 37/226 (16%), Positives = 83/226 (36%), Gaps = 29/226 (12%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+      +E     +      +  +  DK+ +KQ +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAERVEKSGFQFIGPTPDSIRMMGDKVSAKQAMIRAGVPCVPGSDG 136

Query: 111 ------ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSW 160
                 + + R        I  P +IK   GG   G+ V+  + ++   +     ++ + 
Sbjct: 137 ELPDDPVQIRR----IAKSIGYPVIIKAAGGGGGRGMRVVHTEAALVNAVQMTKAEAQAA 192

Query: 161 NHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK- 218
                + +E+++ +   +   ++ D   +   +            K          PA  
Sbjct: 193 FGNPAVYMEKFLQNPRHIEIQILADKYRNAVYLGERDCSMQRRHQK-----VIEEAPAPG 247

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           IP  + +++      A + IG RG    +FL+   + + +++E+N 
Sbjct: 248 IPRKLIEKIGERCVAACKKIGYRGAGTFEFLY--ENGEFYFIEMNT 291


>gi|24213427|ref|NP_710908.1| carbamoyl phosphate synthase large subunit [Leptospira interrogans
           serovar Lai str. 56601]
 gi|45658713|ref|YP_002799.1| carbamoyl phosphate synthase large subunit [Leptospira interrogans
           serovar Copenhageni str. Fiocruz L1-130]
 gi|73917672|sp|Q72NF1|CARB_LEPIC RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|73917673|sp|Q8F832|CARB_LEPIN RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|24194193|gb|AAN47926.1| carbamoyl phosphate synthase large subunit [Leptospira interrogans
           serovar Lai str. 56601]
 gi|45601957|gb|AAS71436.1| carbamoyl-phosphate synthase large chain [Leptospira interrogans
           serovar Copenhageni str. Fiocruz L1-130]
          Length = 1106

 Score = 74.8 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 55/278 (19%), Positives = 106/278 (38%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG   A AL++ G +V  +         D D              V  +L   KPD    
Sbjct: 29  SGTQAAKALKEKGIRVILLNSNPATIMTDPDLADATYVEPMTVPVVQKILEKEKPDAILP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      ILE   +    + + A   + D+   K+ +   GV V  S L
Sbjct: 89  TVGGQTALNLALACNSAGILEKYNVELIGAKVDAIKKAEDRELFKKAMEKIGVRVPASGL 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            N  +  ++ ++ +  P +++P       G  +   +++    + +    +   Q+L+E+
Sbjct: 149 ANNLKDAVEIKNKLGLPLIVRPAFTLGGTGGGIAYTEETFEEVVSKGLKASPISQVLLEE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            V G  E    VM D + +V  I   ++ D           +S  V P + +    Y+ +
Sbjct: 209 SVLGWKEFELEVMRDLADNVVIICSIENIDPMGVHT----GDSITVAPQQTLSDKEYQNL 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           + ++    + IG   G S   F  +P +  V  +E+N 
Sbjct: 265 RDMSIAIIREIGVETGGSNIQFAVNPTNGDVIVIEMNP 302



 Score = 50.5 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 30/198 (15%), Positives = 78/198 (39%), Gaps = 12/198 (6%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYV 129
           LE   +    +   +   + D+ R  +V+    +    S +        +  H I  P +
Sbjct: 682 LEKKGVKILGTSPDSIDRAEDRKRFVEVLEKLKLNSPESGIATSMEEAREIAHKIGYPVL 741

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTC-GVMGDASL 187
           ++P        +++I +++ +   + ++   +    LLI+ ++ D IE+    +     +
Sbjct: 742 VRPSYVLGGRAMLIINEEKELDRYMEKAEEISKDRPLLIDSFLEDAIEVDVDALCDGKEV 801

Query: 188 DVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRS 246
            VT I       +  E    S +S  VLP + +  ++  E+++        +  +G+   
Sbjct: 802 FVTGIME-----HIEEAGIHSGDSACVLPPQTLSKNMMDEIRKATVNLALELQVKGLINI 856

Query: 247 DFLFDPLSRKVFWLEINV 264
            +     +  ++ +E+N 
Sbjct: 857 QYAV--KNEILYIIEVNP 872


>gi|300934144|ref|ZP_07149400.1| acyl-CoA carboxylase, alpha subunit [Corynebacterium resistens DSM
           45100]
          Length = 595

 Score = 74.8 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/235 (14%), Positives = 77/235 (32%), Gaps = 19/235 (8%)

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           ++  + A    D      +G   E+      +E   + +      +     DK+ ++++ 
Sbjct: 72  ALLDIAARAGADCVHPG-YGFLSENSSFARDVEAAGLTWIGPTPDSIDQLGDKVSARKLA 130

Query: 101 SSCGVPVCPSILVNRFTM----DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
           +  G P+ P             +       P  IK   GG   G+ V+++ + I    + 
Sbjct: 131 TEAGAPLAPGTSHPIHDWQEAREFAEEHGMPIAIKAAFGGGGRGLKVVERKEDIEDAFVS 190

Query: 157 S-----SSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLN 210
           +      ++    +  +E+++     +   V+ D   +V  I            +     
Sbjct: 191 AGREAKEAFGR-PECYVEKFLMRPRHVEAQVLADDHGNVAVIGT-----RDCSTQRRFQK 244

Query: 211 STHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
                PA  +  +    +   +    +  G RG    +F+       V +LE+N 
Sbjct: 245 LIEEAPAPFLTDEQRTSIVEGSRQICRTAGYRGAGTVEFIVSE-DGTVSFLEVNT 298


>gi|311113658|ref|YP_003984880.1| carbamoyl-phosphate synthase large subunit [Rothia dentocariosa
           ATCC 17931]
 gi|310945152|gb|ADP41446.1| carbamoyl-phosphate synthase, large subunit [Rothia dentocariosa
           ATCC 17931]
          Length = 1114

 Score = 74.8 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 50/288 (17%), Positives = 109/288 (37%), Gaps = 36/288 (12%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI---------DVD------------RSVGLV 45
           G ++E + S   G      L++ G +V  +         D +              +  +
Sbjct: 21  GQAAEFDYS---GTQALRVLKEEGVRVVLVNSNPATIMTDPEFADATYIEPITPEVIAKI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   +PD     L G    +  +    Q  L   ++    + I A  L  D+   K VV 
Sbjct: 78  IEKERPDAILPTLGGQTALNAAIALDKQGTLREYDVELIGANIEAINLGEDREAFKGVVE 137

Query: 102 SCGVPVCPSILVNR--FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G     SI+V+     +++   +  P V++P      LG  +   ++ +         
Sbjct: 138 RAGGESARSIIVHSMPEALEAAKELGYPMVVRPSFTMGGLGSGMAYNEEDLYRIAGAGIQ 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA- 217
           ++   ++L+E+ + G  E    +M D + +V  +   ++      +   + +S  V PA 
Sbjct: 198 YSPTSEVLLEESILGWKEYELEMMRDKNDNVVVVCSIENFD---PVGVHTGDSITVAPAL 254

Query: 218 KIPLDIYKEVQRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
            +    Y++++ +A    + +G   G     F  DP + ++  +E+N 
Sbjct: 255 TLTDREYQKLRDIAINVIREVGVDTGGCNIQFAVDPKTGRIIVIEMNP 302



 Score = 53.6 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 32/199 (16%), Positives = 76/199 (38%), Gaps = 14/199 (7%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--QHLISPPYV 129
           L+   +P   +   A  L+ D+    +V+   G+    +     F         I  P +
Sbjct: 655 LKDAGVPILGTTPEAIDLAEDRGEFARVLEEGGLISPKNGTAYTFEGAKRVADEIGYPVL 714

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDAS-- 186
           ++P       G+ ++  + ++   L  ++  +     LI++++ D IE+    + D +  
Sbjct: 715 VRPSYVLGGRGMEIVYDEANLARYLENATEVSPSQPALIDKFLEDAIEIDVDALFDGTEL 774

Query: 187 -LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
            L      + ++  +S        +S  + P  +  D+  +V+       +  G RG+  
Sbjct: 775 YLGGVMEHIEEAGIHS------GDSSCTLPPITLGPDVIAKVKEATEAIARGTGVRGLIN 828

Query: 246 SDFLFDPLSRKVFWLEINV 264
             F +   +  +F +E N 
Sbjct: 829 IQFAYVSEN--LFVIEANP 845


>gi|294793334|ref|ZP_06758479.1| carbamoyl-phosphate synthase, large subunit [Veillonella sp.
           6_1_27]
 gi|294455765|gb|EFG24130.1| carbamoyl-phosphate synthase, large subunit [Veillonella sp.
           6_1_27]
          Length = 1066

 Score = 74.8 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 39/262 (14%), Positives = 99/262 (37%), Gaps = 28/262 (10%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH--------GNFGEDGL 67
           AL  AG++   I         D D S  L    L  D    ++           FG    
Sbjct: 578 ALRKAGYQSIMINNNPETVSTDFDISDSLYFEPLTVDDVMEIIDKEQPVGVIAQFGGQTA 637

Query: 68  V--QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTMDSQHL 123
           +     L    +    + + +  ++ D+ R  ++++  G+P     LV  +    ++   
Sbjct: 638 INLAGPLAKRGVKILGTSVDSIDMAEDRERFDELLAKLGIPRPVGALVTSDEEAQEAAKK 697

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           +  P +++P        + ++  D+ + + + ++   +    +LI++Y+ G+E+    + 
Sbjct: 698 LKYPLIVRPSYVLGGRAMEIVYNDKELDVYMKEAVVASKEHPVLIDRYMVGMEVEVDAIS 757

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRG 242
           D     T++ +P            S +S  V PA+ +  ++  ++          +  +G
Sbjct: 758 DG----TDVCIPGIMEQIERAGVHSGDSMAVYPAQHLSQELIDQIVDYTRRIAVGLNVKG 813

Query: 243 ISRSDFLFDPLSRKVFWLEINV 264
           +    ++      ++  +E+N 
Sbjct: 814 VLNIQYIV--ADGELNVIEVNP 833



 Score = 60.5 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 48/286 (16%), Positives = 99/286 (34%), Gaps = 33/286 (11%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI---------DVD------------RSVGLV 45
           G ++E + +   G     +L + G+KV  +         D D              V  V
Sbjct: 19  GQAAEFDYA---GTQACRSLREEGYKVVLVNSNPATIMTDTDIADRVYVEPISLEFVTEV 75

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   +P      L G  G +  VQ     +LE   +    + + A   + D+   K+ + 
Sbjct: 76  IKKERPWGLLATLGGQVGLNMAVQLSEAGVLEEYGVKLLGTTLEAIKQAEDRELFKEAMK 135

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
               PV  S + N     +   + I  P +I+P       G  +   +  +     +   
Sbjct: 136 EINQPVPESDIFNDLEEAVTFANRIGYPIIIRPAYTLGGTGGGIAHNEDEMYEITRRGLK 195

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   Q+L E+ V G  E+   VM D++ +   I V   +       ++  +        
Sbjct: 196 LSPIHQILAERSVAGWKEIEYEVMRDSADN--CIIVCNMENIDPVGVHTGDSIVVAPSQT 253

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +    Y+ ++  +    + +   G     +  +P S +   +E+N 
Sbjct: 254 LNDIQYQMLRTASVEIIRYLKIEGGCNVQYALNPNSNEYIVIEVNP 299


>gi|256853271|ref|ZP_05558641.1| carbamoyl-phosphate synthase large subunit [Enterococcus faecalis
           T8]
 gi|256711730|gb|EEU26768.1| carbamoyl-phosphate synthase large subunit [Enterococcus faecalis
           T8]
          Length = 1060

 Score = 74.8 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 50/296 (16%), Positives = 108/296 (36%), Gaps = 34/296 (11%)

Query: 25  ALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNVLHGNFG 63
           AL++ G++V  ++        D+ +                +L   +PD     L G  G
Sbjct: 36  ALKEEGYEVVLVNSNPATIMTDKEIADHVYIEPITLEFVSRILRKERPDALLPTLGGQTG 95

Query: 64  EDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFT 117
            +  ++     IL+ L +    + + A   + D+   KQ++     P+  S +VN     
Sbjct: 96  LNMAMELSESGILDELNVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIVNTVEQA 155

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IE 176
           +     I  P +++P       G  +   ++ +          +   Q LIE+ + G  E
Sbjct: 156 VAFAKRIGYPIIVRPAFTLGGTGGGMCDTEEELRQIAENGLKLSPVTQCLIEKSIAGFKE 215

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +   VM D++ +   I V   + +     ++  +        +    Y+ ++  +    +
Sbjct: 216 IEYEVMRDSADNA--IVVCNMENFDPVGIHTGDSIVFAPSQTLSDYEYQMLRDASLKIIR 273

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           A+   G        DP S   + +E+N  P ++  S     +   GY   +L   +
Sbjct: 274 ALKIEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAKI 325



 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/221 (11%), Positives = 71/221 (32%), Gaps = 13/221 (5%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--QHLISPPYVIKPL 133
            +    + I     + ++   +Q +    +P  P                I  P +++P 
Sbjct: 650 GVKILGTTIEDLDRAENRDLFEQALQELAIPQPPGDTATSAEEAVVIADRIGYPVLVRPS 709

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
                  + +++  + +   +  +   +    +L++ Y+ G E     + D    +    
Sbjct: 710 YVLGGRAMEIVENQKDLEDYMRHAVKASPEHPVLVDSYLLGQECEVDAICDGETVLIPGI 769

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
           +   +           +S  V P + +  +I   +          + C G+    F+   
Sbjct: 770 MEHIERAGVHS----GDSMAVYPPQYLSQEIQATIADYTKKLALGLNCVGMMNIQFVIHE 825

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
              +V+ +E+N +   T     P ++   G    ++    +
Sbjct: 826 --NRVYVIEVNPRASRT----VPFLSKITGIPMAQVATKAI 860


>gi|149921039|ref|ZP_01909499.1| carbamoyl-phosphate synthase, large subunit [Plesiocystis pacifica
           SIR-1]
 gi|149818171|gb|EDM77627.1| carbamoyl-phosphate synthase, large subunit [Plesiocystis pacifica
           SIR-1]
          Length = 1091

 Score = 74.8 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 59/283 (20%), Positives = 97/283 (34%), Gaps = 45/283 (15%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL   G++V  I         D +              +  VL   KPD    
Sbjct: 29  SGTQAIKALRQEGYEVVLINSNPATIMTDPELADETYVRPLTPDDLDQVLRESKPDAVLP 88

Query: 57  VLHGNFG-----EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
            + G        E G  + I E   +    + +     + D+ R K ++ S G+ V  S 
Sbjct: 89  TVGGQTALNLALEAGR-RGIFEHHGVELLGAPLEVIEKAEDRDRFKALMVSIGLEVPRSF 147

Query: 112 LVNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            V+      D+   I  P +I+P       G  +    +        + S +   + LIE
Sbjct: 148 YVHDMAEARDALDEIGFPAIIRPSFTMGGAGAAIAYNREEFEKMAAHALSESLRSEALIE 207

Query: 170 QYVDG-IELTCGVMGDASLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPA-KIPLDIYKE 226
           + V G  E    VM D   +   I   ++ D           +S  + PA  +    Y+ 
Sbjct: 208 ESVLGWKEYELEVMRDGKDNFVVICAIENLDPMGVHT----GDSVTLAPALTLTDKEYQH 263

Query: 227 VQRLAFLAHQAI-----GCRGISRSDFLFDPLSRKVFWLEINV 264
           ++  A     A+     GC       F FDP S ++  +E+N 
Sbjct: 264 MRTAAAAVVNAVGVTTGGCN----IQFAFDPESGRMIVIEMNP 302



 Score = 51.3 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 40/268 (14%), Positives = 91/268 (33%), Gaps = 35/268 (13%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAIL--- 72
           AL DAGF+   +         D D S  L    L  +   ++L       G +  +L   
Sbjct: 584 ALRDAGFETIMVNCNPETVSTDYDTSDRLYFEPLTRENVLDILD-LEARSGEIVGVLVQF 642

Query: 73  ------------ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTM 118
                       E        +   +   + D+ R  ++V+  G+      +        
Sbjct: 643 GGQTPLKLASAIERAGYSLLGTPADSIDRAEDRGRFGELVTRLGLHAPRWGVARSPEEAF 702

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIEL 177
           +  H I  P +++P        + ++  D+ +   +  +   +    +LI++++   +E 
Sbjct: 703 NIAHQIGFPVLVRPSYVLGGRAMEIVHSDEQLDSYMKLAVRASPDHPVLIDEFLAHAVEF 762

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQ 236
               + D    V    +   +    E    S +ST  +P   +  +  K ++       +
Sbjct: 763 DVDAVADGKDVVIAGIMEHVE----EAGIHSGDSTCCMPPVSVGHETLKVIRETTESLAR 818

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +G  G+    +       +++ LE+N 
Sbjct: 819 ELGVVGLMNVQYAL--KGERLYILEVNP 844


>gi|329905042|ref|ZP_08273977.1| Cyanophycin synthetase [Oxalobacteraceae bacterium IMCC9480]
 gi|327547778|gb|EGF32551.1| Cyanophycin synthetase [Oxalobacteraceae bacterium IMCC9480]
          Length = 831

 Score = 74.8 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 29/112 (25%), Positives = 54/112 (48%), Gaps = 5/112 (4%)

Query: 88  ALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIV-I 144
           A++ DK  +K+++S+ GVPV     V+      ++   I  P V+KPL G    G+ V +
Sbjct: 175 AIAQDKDLTKKLLSAAGVPVPNGRAVSDVDDAWEAALEIGLPVVVKPLDGNQGKGVTVNV 234

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK 196
              + +      +S +   D +L+E+Y+ G +    V+GD  +       P+
Sbjct: 235 TSREQLAAAYATASEFR--DAILVERYLPGNDFRLLVVGDKLVAAARRDPPQ 284


>gi|257082407|ref|ZP_05576768.1| carbamoyl-phosphate synthase [Enterococcus faecalis E1Sol]
 gi|256990437|gb|EEU77739.1| carbamoyl-phosphate synthase [Enterococcus faecalis E1Sol]
          Length = 1060

 Score = 74.8 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 50/296 (16%), Positives = 108/296 (36%), Gaps = 34/296 (11%)

Query: 25  ALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNVLHGNFG 63
           AL++ G++V  ++        D+ +                +L   +PD     L G  G
Sbjct: 36  ALKEEGYEVVLVNSNPATIMTDKEIADHVYIEPITLEFVSRILRKERPDALLPTLGGQTG 95

Query: 64  EDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFT 117
            +  ++     IL+ L +    + + A   + D+   KQ++     P+  S +VN     
Sbjct: 96  LNMAMELSESGILDELNVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIVNTVEQA 155

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IE 176
           +     I  P +++P       G  +   ++ +          +   Q LIE+ + G  E
Sbjct: 156 VAFAKRIGYPIIVRPAFTLGGTGGGMCDTEEELRQIAENGLKLSPVTQCLIEKSIAGFKE 215

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +   VM D++ +   I V   + +     ++  +        +    Y+ ++  +    +
Sbjct: 216 IEYEVMRDSADNA--IVVCNMENFDPVGIHTGDSIVFAPSQTLSDYEYQMLRDASLKIIR 273

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           A+   G        DP S   + +E+N  P ++  S     +   GY   +L   +
Sbjct: 274 ALKIEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAKI 325



 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/221 (11%), Positives = 71/221 (32%), Gaps = 13/221 (5%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--QHLISPPYVIKPL 133
            +    + I     + ++   +Q +    +P  P                I  P +++P 
Sbjct: 650 GVKILGTTIEDLDRAENRDLFEQALQELAIPQPPGDTATSAEEAVVIADRIGYPVLVRPS 709

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
                  + +++  + +   +  +   +    +L++ Y+ G E     + D    +    
Sbjct: 710 YVLGGRAMEIVENQKDLEDYMRHAVKASPEHPVLVDSYLLGQECEVDAICDGETVLIPGI 769

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
           +   +           +S  V P + +  +I   +          + C G+    F+   
Sbjct: 770 MEHIERAGVHS----GDSMAVYPPQYLSQEIQATIADYTKKLALGLNCVGMMNIQFVIHE 825

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
              +V+ +E+N +   T     P ++   G    ++    +
Sbjct: 826 --NRVYVIEVNPRASRT----VPFLSKITGIPMAQVATKAI 860


>gi|229545672|ref|ZP_04434397.1| carbamoyl phosphate synthase large subunit [Enterococcus faecalis
           TX1322]
 gi|307291846|ref|ZP_07571717.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecalis
           TX0411]
 gi|229309240|gb|EEN75227.1| carbamoyl phosphate synthase large subunit [Enterococcus faecalis
           TX1322]
 gi|306497112|gb|EFM66658.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecalis
           TX0411]
 gi|315029551|gb|EFT41483.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecalis
           TX4000]
          Length = 1066

 Score = 74.8 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 50/296 (16%), Positives = 108/296 (36%), Gaps = 34/296 (11%)

Query: 25  ALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNVLHGNFG 63
           AL++ G++V  ++        D+ +                +L   +PD     L G  G
Sbjct: 42  ALKEEGYEVVLVNSNPATIMTDKEIADHVYIEPITLEFVSRILRKERPDALLPTLGGQTG 101

Query: 64  EDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFT 117
            +  ++     IL+ L +    + + A   + D+   KQ++     P+  S +VN     
Sbjct: 102 LNMAMELSESGILDELNVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIVNTVEQA 161

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IE 176
           +     I  P +++P       G  +   ++ +          +   Q LIE+ + G  E
Sbjct: 162 VAFAKRIGYPIIVRPAFTLGGTGGGMCDTEEELRQIAENGLKLSPVTQCLIEKSIAGFKE 221

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +   VM D++ +   I V   + +     ++  +        +    Y+ ++  +    +
Sbjct: 222 IEYEVMRDSADNA--IVVCNMENFDPVGIHTGDSIVFAPSQTLSDYEYQMLRDASLKIIR 279

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           A+   G        DP S   + +E+N  P ++  S     +   GY   +L   +
Sbjct: 280 ALKIEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAKI 331



 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/221 (11%), Positives = 71/221 (32%), Gaps = 13/221 (5%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--QHLISPPYVIKPL 133
            +    + I     + ++   +Q +    +P  P                I  P +++P 
Sbjct: 656 GVKILGTTIEDLDRAENRDLFEQALQELAIPQPPGDTATSAEEAVVIADRIGYPVLVRPS 715

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
                  + +++  + +   +  +   +    +L++ Y+ G E     + D    +    
Sbjct: 716 YVLGGRAMEIVENQKDLEDYMRHAVKASPEHPVLVDSYLLGQECEVDAICDGETVLIPGI 775

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
           +   +           +S  V P + +  +I   +          + C G+    F+   
Sbjct: 776 MEHIERAGVHS----GDSMAVYPPQYLSQEIQATIADYTKKLALGLNCVGMMNIQFVIHE 831

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
              +V+ +E+N +   T     P ++   G    ++    +
Sbjct: 832 --NRVYVIEVNPRASRT----VPFLSKITGIPMAQVATKAI 866


>gi|295671456|ref|XP_002796275.1| acetyl-/propionyl-coenzyme A carboxylase alpha chain
           [Paracoccidioides brasiliensis Pb01]
 gi|226284408|gb|EEH39974.1| acetyl-/propionyl-coenzyme A carboxylase alpha chain
           [Paracoccidioides brasiliensis Pb01]
          Length = 1203

 Score = 74.8 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 27/218 (12%), Positives = 71/218 (32%), Gaps = 17/218 (7%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVN 114
           +G   E+     + +   I +      +      K R++++    GVP+ P     +   
Sbjct: 43  YGFLSENTDFARLAKEAGIAFAGPSPESIEAFGLKHRARELAIDAGVPIVPGTQSLVKDE 102

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-----SSSWNHGDQLLIE 169
              +++   +  P ++K   GG  +G++    ++ +            + + +G   +  
Sbjct: 103 EEAVNASKKLGFPVMLKATAGGGGMGLLTCHSEEEVRESFATVKSRGEALFKNGGMFIER 162

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI---PLDIYKE 226
            Y     +   V G+           +        K          P+       ++ ++
Sbjct: 163 YYPSSHHIEVQVFGNGLGKAIHFGERECSIQRRHQK-----VVEECPSPFVTKHPELRQK 217

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +   A    ++         ++L D  +   F+LE+N 
Sbjct: 218 LCDAAVRLAESTKYASAGTIEYLVDDDTGDFFFLEMNT 255


>gi|62185165|ref|YP_219950.1| acetyl-CoA carboxylase biotin carboxylase subunit [Chlamydophila
           abortus S26/3]
 gi|62148232|emb|CAH63991.1| biotin carboxylase [Chlamydophila abortus S26/3]
          Length = 451

 Score = 74.8 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 83/220 (37%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---S 110
            +H  +G   E+    +I E   + +      + A   DK+ +KQ+      PV P    
Sbjct: 76  AVHPGYGFLSENANFASICESCGLTFIGPSSESIATMGDKIAAKQLAKKVKCPVIPGSEG 135

Query: 111 ILVNRFT-MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS----IPLDLLQSSSWNHGDQ 165
           I+ +    +     I  P VIK + GG   GI ++K+             ++ +  +   
Sbjct: 136 IIKDEAEGLKIAEKIGFPIVIKAVAGGGGRGIRIVKEKDEFFRAFSAARAEAEAGFNNPD 195

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE++++    L   ++GD   +   +            K             +  ++ 
Sbjct: 196 VYIEKFIENPRHLEVQILGDKHGNYVHLGERDCTVQRRRQK----LIEETPSPILTPELR 251

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +V ++A    ++     +   +FL D   +K +++E+N 
Sbjct: 252 AKVGKVAVDLARSANYHSVGTVEFLLDK-DKKFYFMEMNT 290


>gi|317401756|gb|EFV82374.1| biotin carboxylase [Achromobacter xylosoxidans C54]
          Length = 413

 Score = 74.8 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 38/198 (19%), Positives = 74/198 (37%), Gaps = 16/198 (8%)

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYVIKP 132
             IP        +    DK   K+++ + G+ V             +    +  P +IKP
Sbjct: 105 FGIP--GHTPEQADRFRDKTTMKRILRAAGLRVPHWHACTDTAQVTERARELGFPLIIKP 162

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192
           ++G SS G+  I   + +   L  +    H     IE+++DG  L    + D + D   I
Sbjct: 163 VRGASSKGVRRIDSPEELAAFLGATDPAGHE----IEEFIDGDILHVDGVIDQAGDCPFI 218

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD- 251
            V +  + S  L + +         +    + ++ +  A     A+  RG +   F  + 
Sbjct: 219 CVSR--YISSCLGFETGGQPLGSVIQRDTPLARDCKAFALACLDALELRGSA---FHLEL 273

Query: 252 -PLSRKVFWLEINV-QPG 267
                ++ +LE+    PG
Sbjct: 274 FHRDGELVFLEVGARVPG 291


>gi|289547938|ref|YP_003472926.1| MGS domain protein [Thermocrinis albus DSM 14484]
 gi|289181555|gb|ADC88799.1| MGS domain protein [Thermocrinis albus DSM 14484]
          Length = 532

 Score = 74.8 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 43/265 (16%), Positives = 102/265 (38%), Gaps = 17/265 (6%)

Query: 27  EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           +   F+   ++   +V  V+   KPD       G       +   L    +    +   +
Sbjct: 56  DRLYFEPVVLE---NVLEVIRREKPDGVLIQFGGQTPLKLSLP--LRDAGVTILGTPPES 110

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYVIKPLKGGSSLGIIVI 144
             ++ D+   ++++   G+   PS  V            I  P +++P        + +I
Sbjct: 111 IDIAEDRELFRRLIQKLGLRQPPSEAVRSKEEAIRVAEAIGYPVLVRPSYVLGGRAMRII 170

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYE 203
              + +   L ++   ++   +LI+ Y+ D +E+    +GD    +    +   +     
Sbjct: 171 YDREELVTYLEEAVEVSYQRPILIDAYLSDSVEVDVDAIGDGEDFLVGAVMEHIEEAGV- 229

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
             +S  ++  + P  +P D+ +E++R +    +++G  G+    F       +V+ LE+N
Sbjct: 230 --HSGDSAASIPPYTLPSDVVEEIKRQSKEIARSLGVVGLINLQFAV--KDGEVYVLEVN 285

Query: 264 VQPGMTPVSIFPEMAAYAGYSFREL 288
            +   T     P ++   GY   +L
Sbjct: 286 PRASRT----VPFVSKAIGYPLAKL 306


>gi|260220045|emb|CBA27190.1| Biotin carboxylase [Curvibacter putative symbiont of Hydra
           magnipapillata]
          Length = 449

 Score = 74.8 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/225 (15%), Positives = 79/225 (35%), Gaps = 27/225 (12%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+      +E     +      +  +  DK+ +KQ +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAERVEKSGFQFIGPTPESIRIMGDKVSAKQAMIRAGVPCVPGSEG 136

Query: 111 ------ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSW 160
                 + + R        I  P +IK   GG   G+ V+  + ++   +     ++ + 
Sbjct: 137 ELPDDPVAMKR----IAKAIGYPVIIKAAGGGGGRGMRVVHTEAALVNAVQMTKAEAGAA 192

Query: 161 NHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI 219
            +   + +E+++ +   +   ++ D   +   +            K             I
Sbjct: 193 FNNPAVYMEKFLQNPRHIEIQILADKHKNAVYLGERDCSMQRRHQKVL----EESPAPGI 248

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              + + +      A + IG RG    +FL+     + +++E+N 
Sbjct: 249 NRKLIERIGERCVAACKKIGYRGAGTFEFLY--EDGEFYFIEMNT 291


>gi|52141604|ref|YP_085227.1| carbamoyl phosphate synthase large subunit [Bacillus cereus E33L]
 gi|81824210|sp|Q636E0|CARB_BACCZ RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|51975073|gb|AAU16623.1| carbamoyl-phosphate synthase [Bacillus cereus E33L]
          Length = 1072

 Score = 74.8 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 50/314 (15%), Positives = 114/314 (36%), Gaps = 37/314 (11%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQIDVD---------------------RSVGLV 45
           G ++E + S   G     +L++ G+KV  ++ +                       V  +
Sbjct: 21  GQAAEFDYS---GTQACQSLKEEGYKVILVNSNPATIMTDTATADKVYIEPLTLEFVSRI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   +PD     L G  G +  V+     +LE   +    + + A   + D+   + ++ 
Sbjct: 78  IRKERPDAILPTLGGQTGLNMAVELAKSGVLEECGVEILGTKLSAIEQAEDRDLFRTLMQ 137

Query: 102 SCGVPVCPSILVNRFTMD--SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
               P  PS +++         + I  P +++P       G  +   ++ +   +     
Sbjct: 138 DLNEPTPPSEIIHNLDEAYGFVNEIGYPVIVRPAFTLGGTGGGICHNEEELIEIVTSGLK 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   Q L+E+ + G  E+   VM D++ +   I V   +       ++  +        
Sbjct: 198 HSPVTQCLLEKSIAGCKEIEYEVMRDSNDNA--IVVCNMENIDPVGVHTGDSIVVAPSQT 255

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278
           +    Y+ ++  +    +A+G  G        DP S + + +E+N  P ++  S     +
Sbjct: 256 LSDREYQMLRNTSLRIIRALGIEGGCNVQLALDPYSFQYYVIEVN--PRVSRSS--ALAS 311

Query: 279 AYAGYSFRELLLWM 292
              GY   +L   +
Sbjct: 312 KATGYPIAKLAAKI 325



 Score = 65.5 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 37/283 (13%), Positives = 100/283 (35%), Gaps = 39/283 (13%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ------ 69
           A+++AG++   I         D   S  L    L  +   +++     E  +VQ      
Sbjct: 580 AIKEAGYEAIIINNNPETVSTDFSISDKLYFEPLTIEDVMHIIDLEKPEGVIVQFGGQTA 639

Query: 70  ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHL 123
               A LE   +    + +     + D+ + +  ++  G+P             +     
Sbjct: 640 INLAAKLEEHGVKILGTSLEDLDRAEDRDKFEAALTKLGIPQPVGKTATTVEQAVAIAEE 699

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + ++ + + +   +  +   +    +LI++Y+ G E+    + 
Sbjct: 700 IGYPVLVRPSYVLGGRAMEIVYRQEELLHYMKNAVKVHADHPVLIDRYMVGKEIEVDAIS 759

Query: 184 DAS---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIG 239
           D     +      + ++  +S        +S  V P + +   + +++        + + 
Sbjct: 760 DGENVFIPGIMEHIERAGVHS-------GDSIGVYPPQSLSEKLKEQIIEHTIALGKGLN 812

Query: 240 CRGISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277
             G+    F+      +V+ +E+N       P ++ ++  P  
Sbjct: 813 IVGLLNIQFVVFK--DQVYVIEVNPRASRTVPFLSKITGVPMA 853


>gi|269961322|ref|ZP_06175687.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269833873|gb|EEZ87967.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 1196

 Score = 74.8 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/220 (13%), Positives = 71/220 (32%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       E   + +             K  ++++ +   VP+ P   +
Sbjct: 77  AIHPGYGFLSENPEFVERCEQEGLVFLGPTAEQMRAFGLKHSARRIATQAKVPLLPGTEL 136

Query: 114 ---NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN----HGDQL 166
               +  + +   I  P ++K   GG  +G+        +          +      D +
Sbjct: 137 LSDKQQALFAAEKIGYPVMLKSTAGGGGIGMQCCFSSDELTEAFDSVKRLSANNFSNDGV 196

Query: 167 LIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIY 224
            +E+++     +   + GD    V  +            +  +       PA  +     
Sbjct: 197 FVEKFIQQARHIEVQIFGDGRGHVVALGE-----RDCSAQRRNQKVIEETPAPNLSESTR 251

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            E+Q  A      +  R     +F+ D  ++  ++LE+N 
Sbjct: 252 TELQNTAIRLASKVSYRNAGTVEFVLDQQTQAFYFLEVNT 291


>gi|121595930|ref|YP_987826.1| acetyl-CoA carboxylase, biotin carboxylase [Acidovorax sp. JS42]
 gi|120608010|gb|ABM43750.1| acetyl-CoA carboxylase, biotin carboxylase [Acidovorax sp. JS42]
          Length = 449

 Score = 74.8 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 37/226 (16%), Positives = 83/226 (36%), Gaps = 29/226 (12%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+      +E     +      +  +  DK+ +KQ +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAERVEKSGFQFIGPTPDSIRMMGDKVSAKQAMIRAGVPCVPGSDG 136

Query: 111 ------ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSW 160
                 + + R        I  P +IK   GG   G+ V+  + ++   +     ++ + 
Sbjct: 137 ELPDDPVQIRR----IAKSIGYPVIIKAAGGGGGRGMRVVHTEAALVNAVQMTKAEAQAA 192

Query: 161 NHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK- 218
                + +E+++ +   +   ++ D   +   +            K          PA  
Sbjct: 193 FGNPAVYMEKFLQNPRHIEIQILADKYRNAVYLGERDCSMQRRHQK-----VIEEAPAPG 247

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           IP  + +++      A + IG RG    +FL+   + + +++E+N 
Sbjct: 248 IPRKLIEKIGERCVAACKKIGYRGAGTFEFLY--ENGEFYFIEMNT 291


>gi|58264816|ref|XP_569564.1| methylcrotonoyl-Coenzyme A carboxylase 1 [Cryptococcus neoformans
           var. neoformans JEC21]
 gi|57225796|gb|AAW42257.1| methylcrotonoyl-Coenzyme A carboxylase 1, putative [Cryptococcus
           neoformans var. neoformans JEC21]
          Length = 733

 Score = 74.8 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/200 (17%), Positives = 74/200 (37%), Gaps = 15/200 (7%)

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVI 130
             + +      A      K  SK+++ + GVP  P       + D+          P +I
Sbjct: 165 AGLIFIGPSAEAIKSMGSKRESKEIMVAAGVPCVPGYHGADQSYDALLKGSQQTGYPLII 224

Query: 131 KPLKGGSSLGIIVIKKD----QSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDA 185
           KP  GG   G+ +++        +     ++      D++L+E++++    +   V GD 
Sbjct: 225 KPTHGGGGKGMRIVRDPLTLQDELLSAQREALKSFGNDEVLLERWLEKPRHVEVQVFGDQ 284

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGIS 244
             +   +           ++          PA  +   + ++    A  A +AI   G  
Sbjct: 285 FGNCVALWE-----RDCSVQRRHQKIIEEAPAPGLSPALKRDFAEKAVAAAKAINYVGAG 339

Query: 245 RSDFLFDPLSRKVFWLEINV 264
             +F+ D  + + F++E+N 
Sbjct: 340 TVEFIMDAETGEHFFMEMNT 359


>gi|163847334|ref|YP_001635378.1| carbamoyl-phosphate synthase large subunit [Chloroflexus
           aurantiacus J-10-fl]
 gi|222525180|ref|YP_002569651.1| carbamoyl-phosphate synthase large subunit [Chloroflexus sp.
           Y-400-fl]
 gi|163668623|gb|ABY34989.1| carbamoyl-phosphate synthase, large subunit [Chloroflexus
           aurantiacus J-10-fl]
 gi|222449059|gb|ACM53325.1| carbamoyl-phosphate synthase, large subunit [Chloroflexus sp.
           Y-400-fl]
          Length = 1097

 Score = 74.8 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 51/278 (18%), Positives = 95/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D               S+  ++A  +PD    
Sbjct: 29  SGTQACKALREEGYRVVLVNSNPATIMTDPGLADATYIEPLTVPSLERIIARERPDAILP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  V      ILE   +    + + A  ++ D+ R K  +   G+ V  S  
Sbjct: 89  TVGGQTALNLAVALHEAGILEKYGVELIGASVEAVRIAEDRQRFKDKMIEIGLQVPRSGT 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +        P +I+P       G  +    +     + +    +   Q+L+E+
Sbjct: 149 ATTLEEALAIVAQTGFPAIIRPSFTLGGEGGGIAYNMEEFRTIVERGLDASPVSQVLVEE 208

Query: 171 YVDG-IELTCGVMGDA-SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            V G  E    VM D     V   ++   D           +S  V PA  +    Y+ +
Sbjct: 209 SVLGWKEFELEVMRDRNDNGVIICSIENIDPMGVHT----GDSITVAPAMTLTDREYQRM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           + +     +A+G   G S   F   P   +++ +E+N 
Sbjct: 265 RDMGLAVLRAVGVETGGSNVQFAVSPTDGRIYVIEMNP 302



 Score = 67.5 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 38/233 (16%), Positives = 88/233 (37%), Gaps = 17/233 (7%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQHLISPPYV 129
           LE + +P   +   A  L+ D+ R   ++    +P         +   +     I  P V
Sbjct: 658 LEAVGVPIWGTAPEAIDLAEDRDRFGALLKELNIPAPEHGSATSWEEALTVARRIGYPVV 717

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  D ++   + ++ + +    +LI++++ D  E+    + D    
Sbjct: 718 VRPSYVLGGRAMAIVYDDAALERYMREAVAASPEHPVLIDRFLEDAFEMDVDAVCDGHTV 777

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           V    + + +           +S  V+P  +   +    ++       QA+G  G+   +
Sbjct: 778 VIAGIMEQIELAGVHS----GDSACVIPTYMVAEEHVVTMRHYTERLAQALGVVGL--MN 831

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
             +      V+ LE+N +   T     P +A   G  + +L    V+ A+  R
Sbjct: 832 IQYAMKDGVVYVLEVNPRASRT----VPFVAKATGVPWVQL---AVQCAAGAR 877


>gi|329890266|ref|ZP_08268609.1| carbamoyl-phosphate synthase L chain, ATP binding domain protein
           [Brevundimonas diminuta ATCC 11568]
 gi|328845567|gb|EGF95131.1| carbamoyl-phosphate synthase L chain, ATP binding domain protein
           [Brevundimonas diminuta ATCC 11568]
          Length = 658

 Score = 74.8 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 74/220 (33%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  FG   E+      L+   I +      A     DK+ SK+  +  GV   P    
Sbjct: 77  AVHPGFGFLSENAGFARRLKAEGIAFIGPNPEAIDAMGDKITSKKFAAEAGVSTVPGHMG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL--DLLQSSSWNH--GDQ 165
            I      +     I  P +IK   GG   GI V   D  +      +++ + N    D+
Sbjct: 137 LIETPDEAVKIAREIGYPVMIKASAGGGGKGIRVAHSDDDMAEGFAAVKAEALNAFGDDR 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+++ D   +   V+GD   +V  +   +        K             +     
Sbjct: 197 VFLEKFIVDPRHIEIQVLGDKHGNVIHLFERECSIQRRNQK----VIEEAPSPLLDEATR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +   A    +A+        +F      +  ++LE+N 
Sbjct: 253 AAMGAQAVALAKAVNYDSAGTVEF-VAGQDKSFYFLEMNT 291


>gi|315168886|gb|EFU12903.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecalis
           TX1341]
          Length = 1066

 Score = 74.8 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 50/296 (16%), Positives = 108/296 (36%), Gaps = 34/296 (11%)

Query: 25  ALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNVLHGNFG 63
           AL++ G++V  ++        D+ +                +L   +PD     L G  G
Sbjct: 42  ALKEEGYEVVLVNSNPATIMTDKEIADHVYIEPITLEFVSRILRKERPDALLPTLGGQTG 101

Query: 64  EDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFT 117
            +  ++     IL+ L +    + + A   + D+   KQ++     P+  S +VN     
Sbjct: 102 LNMAMELSESGILDELNVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIVNTVEQA 161

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IE 176
           +     I  P +++P       G  +   ++ +          +   Q LIE+ + G  E
Sbjct: 162 VAFAKRIGYPIIVRPAFTLGGTGGGMCDTEEELRQIAENGLKLSPVTQCLIEKSIAGFKE 221

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +   VM D++ +   I V   + +     ++  +        +    Y+ ++  +    +
Sbjct: 222 IEYEVMRDSADNA--IVVCNMENFDPVGIHTGDSIVFAPSQTLSDYEYQMLRDASLKIIR 279

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           A+   G        DP S   + +E+N  P ++  S     +   GY   +L   +
Sbjct: 280 ALKIEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAKI 331



 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/221 (11%), Positives = 71/221 (32%), Gaps = 13/221 (5%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--QHLISPPYVIKPL 133
            +    + I     + ++   +Q +    +P  P                I  P +++P 
Sbjct: 656 GVKILGTTIEDLDRAENRDLFEQALQELAIPQPPGDTATSAEEAVVIADRIGYPVLVRPS 715

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
                  + +++  + +   +  +   +    +L++ Y+ G E     + D    +    
Sbjct: 716 YVLGGRAMEIVENQKDLEDYMRHAVKASPEHPVLVDSYLLGQECEVDAICDGETVLIPGI 775

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
           +   +           +S  V P + +  +I   +          + C G+    F+   
Sbjct: 776 MEHIERAGVHS----GDSMAVYPPQYLSQEIQATIADYTKKLALGLNCVGMMNIQFVIHE 831

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
              +V+ +E+N +   T     P ++   G    ++    +
Sbjct: 832 --NRVYVIEVNPRASRT----VPFLSKITGIPMAQVATKAI 866


>gi|300783683|ref|YP_003763974.1| pyruvate carboxylase [Amycolatopsis mediterranei U32]
 gi|299793197|gb|ADJ43572.1| pyruvate carboxylase [Amycolatopsis mediterranei U32]
          Length = 1125

 Score = 74.8 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 35/216 (16%), Positives = 77/216 (35%), Gaps = 17/216 (7%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC----PSILVN 114
           +G   E+  +    E   I +         L+ +K R+ +     GVPV     PS  V+
Sbjct: 83  YGFLSENPDLARACEEAGITFVGPSADILELTGNKARAVKAAREAGVPVLGSSEPSSDVD 142

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQLLIEQ 170
                ++  +  P  +K + GG   G+  ++    +   +  ++           + +E+
Sbjct: 143 ALVAAAED-LGFPVFVKAVAGGGGRGMRRVEDPAVLRESIEAAAREAESAFGDPTVFLEK 201

Query: 171 Y-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQ 228
             V+   +   ++ D + ++  +           ++        + PA  +  ++   + 
Sbjct: 202 AVVEPRHIEVQILADGAGNIIHLYE-----RDCSVQRRHQKVVELAPAPNLDPELRDRIC 256

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             A    + IG R     +FL D     VF  E+N 
Sbjct: 257 ADAVKFAKQIGYRNAGTVEFLLDKQGNHVFI-EMNP 291


>gi|257085039|ref|ZP_05579400.1| carbamoyl-phosphate synthase [Enterococcus faecalis Fly1]
 gi|256993069|gb|EEU80371.1| carbamoyl-phosphate synthase [Enterococcus faecalis Fly1]
          Length = 1060

 Score = 74.8 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 50/296 (16%), Positives = 108/296 (36%), Gaps = 34/296 (11%)

Query: 25  ALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNVLHGNFG 63
           AL++ G++V  ++        D+ +                +L   +PD     L G  G
Sbjct: 36  ALKEEGYEVVLVNSNPATIMTDKEIADHVYIEPITLEFVSRILRKERPDALLPTLGGQTG 95

Query: 64  EDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFT 117
            +  ++     IL+ L +    + + A   + D+   KQ++     P+  S +VN     
Sbjct: 96  LNMAMELSESGILDELNVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIVNTVEQA 155

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IE 176
           +     I  P +++P       G  +   ++ +          +   Q LIE+ + G  E
Sbjct: 156 VAFAKRIGYPIIVRPAFTLGGTGGGMCDTEEELRQIAENGLKLSPVTQCLIEKSIAGFKE 215

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +   VM D++ +   I V   + +     ++  +        +    Y+ ++  +    +
Sbjct: 216 IEYEVMRDSADNA--IVVCNMENFDPVGIHTGDSIVFAPSQTLSDYEYQMLRDASLKIIR 273

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           A+   G        DP S   + +E+N  P ++  S     +   GY   +L   +
Sbjct: 274 ALKIEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAKI 325



 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/221 (11%), Positives = 71/221 (32%), Gaps = 13/221 (5%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--QHLISPPYVIKPL 133
            +    + I     + ++   +Q +    +P  P                I  P +++P 
Sbjct: 650 GVKILGTTIEDLDRAENRDLFEQALQELAIPQPPGDTATSAEEAVVIADRIGYPVLVRPS 709

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
                  + +++  + +   +  +   +    +L++ Y+ G E     + D    +    
Sbjct: 710 YVLGGRAMEIVENQKDLEDYMQHAVKASPEHPVLVDSYLLGQECEVDAICDGETVLIPGI 769

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
           +   +           +S  V P + +  +I   +          + C G+    F+   
Sbjct: 770 MEHIERAGVHS----GDSMAVYPPQYLSQEIQATIADYTKKLALGLNCVGMMNIQFVIHE 825

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
              +V+ +E+N +   T     P ++   G    ++    +
Sbjct: 826 --NRVYVIEVNPRASRT----VPFLSKITGIPMAQVATKAI 860


>gi|300868973|ref|ZP_07113577.1| carbamoyl phosphate synthase large subunit [Oscillatoria sp. PCC
           6506]
 gi|300333040|emb|CBN58769.1| carbamoyl phosphate synthase large subunit [Oscillatoria sp. PCC
           6506]
          Length = 1101

 Score = 74.8 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 55/279 (19%), Positives = 104/279 (37%), Gaps = 36/279 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVDRS------------VGLVLAHLKPDLAFN 56
           SG     AL + GF+V  +         D + +            +  ++A  +P     
Sbjct: 29  SGTQACKALREEGFQVVLVNSNPATIMTDPETAERTYIEPLTPEILEKIIAKERPQAILP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  V      +LE   +    + + A  ++ D++  K+ ++  GVPVCPS +
Sbjct: 89  TMGGQTALNLAVAVAKNGVLEKYGVELIGAKLPAIEMAEDRLLFKEAMARIGVPVCPSGI 148

Query: 113 ---VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
              ++        + S P +I+P       G  +    +            +   Q+LIE
Sbjct: 149 ACNLDEARAIGHEIGSFPLIIRPAFTMGGTGGGISYNQEEFEEMAQGGIDASPVSQILIE 208

Query: 170 QYVDG-IELTCGVMGD-ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKE 226
           Q + G  E    VM D A   V   ++   D           +S  V PA+ +    Y+ 
Sbjct: 209 QSLIGWKEYELEVMRDLADNVVIICSIENLDPMGIHT----GDSITVAPAQTLTDKEYQR 264

Query: 227 VQRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           ++  +    + IG   G S   F  +P++ +   +E+N 
Sbjct: 265 LRDASIKIIREIGVETGGSNIQFAVNPVNGEFIVIEMNP 303



 Score = 49.0 bits (116), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 26/188 (13%), Positives = 71/188 (37%), Gaps = 9/188 (4%)

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGSS 138
            +   +   + D+ R ++++    +    + +   F   +     I  P V++P      
Sbjct: 691 GTSPDSIDTAEDRERFEKILRELNIQQAANGMARSFEDALIVAQRIGYPVVVRPSYVLGG 750

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKS 197
             + ++  D  +   ++ +        +LI+++++  IE+    + D S +V    + + 
Sbjct: 751 RAMEIVYSDVELERYMMFAVHVEPDHPILIDKFLENAIEVDVDAIADTSGNVVIGGIME- 809

Query: 198 DFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256
             +  E    S +S   +P + + L     ++       +A+   G+    F       +
Sbjct: 810 --HIEEAGIHSGDSACSIPTQTLSLAALATIRGWTVELAKALKVIGLMNIQFAV--QGEQ 865

Query: 257 VFWLEINV 264
           V+ +E N 
Sbjct: 866 VYIIEANP 873


>gi|327535280|gb|AEA94114.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecalis
           OG1RF]
          Length = 1066

 Score = 74.8 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 50/296 (16%), Positives = 108/296 (36%), Gaps = 34/296 (11%)

Query: 25  ALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNVLHGNFG 63
           AL++ G++V  ++        D+ +                +L   +PD     L G  G
Sbjct: 42  ALKEEGYEVVLVNSNPATIMTDKEIADHVYIEPITLEFVSRILRKERPDALLPTLGGQTG 101

Query: 64  EDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFT 117
            +  ++     IL+ L +    + + A   + D+   KQ++     P+  S +VN     
Sbjct: 102 LNMAMELSESGILDELNVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIVNTVEQA 161

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IE 176
           +     I  P +++P       G  +   ++ +          +   Q LIE+ + G  E
Sbjct: 162 VAFAKRIGYPIIVRPAFTLGGTGGGMCDTEEELRQIAENGLKLSPVTQCLIEKSIAGFKE 221

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +   VM D++ +   I V   + +     ++  +        +    Y+ ++  +    +
Sbjct: 222 IEYEVMRDSADNA--IVVCNMENFDPVGIHTGDSIVFAPSQTLSDYEYQMLRDASLKIIR 279

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           A+   G        DP S   + +E+N  P ++  S     +   GY   +L   +
Sbjct: 280 ALKIEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAKI 331



 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/221 (11%), Positives = 71/221 (32%), Gaps = 13/221 (5%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--QHLISPPYVIKPL 133
            +    + I     + ++   +Q +    +P  P                I  P +++P 
Sbjct: 656 GVKILGTTIEDLDRAENRDLFEQALQELAIPQPPGDTATSAEEAVVIADRIGYPVLVRPS 715

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
                  + +++  + +   +  +   +    +L++ Y+ G E     + D    +    
Sbjct: 716 YVLGGRAMEIVENQKDLEDYMRHAVKASPEHPVLVDSYLLGQECEVDAICDGETVLIPGI 775

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
           +   +           +S  V P + +  +I   +          + C G+    F+   
Sbjct: 776 MEHIERAGVHS----GDSMAVYPPQYLSQEIQATIADYTKKLALGLNCVGMMNIQFVIHE 831

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
              +V+ +E+N +   T     P ++   G    ++    +
Sbjct: 832 --NRVYVIEVNPRASRT----VPFLSKITGIPMAQVATKAI 866


>gi|317483501|ref|ZP_07942487.1| carbamoyl-phosphate synthase subunit L [Bifidobacterium sp.
           12_1_47BFAA]
 gi|316915052|gb|EFV36488.1| carbamoyl-phosphate synthase subunit L [Bifidobacterium sp.
           12_1_47BFAA]
          Length = 654

 Score = 74.8 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 38/199 (19%), Positives = 72/199 (36%), Gaps = 12/199 (6%)

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPY 128
           E     +      A     DK+ +++V     VP  P     +   R  +D  H    P 
Sbjct: 99  EDAGAIWVGPHHTALVDLGDKITARRVALRAKVPPVPGLSEPVTDVRMLLDFAHTHGYPI 158

Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD--QLLIEQYVD-GIELTCGVMGDA 185
           ++K   GG   GI V+  D+ +    +   +   GD  +  IE++VD    +      D+
Sbjct: 159 MMKRTDGGGGHGITVVHDDEELRRFYMNHDALQGGDLKEYFIEKFVDKARHVETQSGRDS 218

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
             + T  +           K             +  +I   ++  +      +G  G+  
Sbjct: 219 HGNFTVYSTRDCSLQRRNQK----LVEEAPAPFLSEEIISTLEEYSRRLFTTVGYVGLGT 274

Query: 246 SDFLFDPLSRKVFWLEINV 264
            +F+  P + KV++LE+N 
Sbjct: 275 CEFMVTP-NGKVYFLEVNP 292


>gi|307262366|ref|ZP_07544012.1| Biotin carboxylase [Actinobacillus pleuropneumoniae serovar 12 str.
           1096]
 gi|306867914|gb|EFM99744.1| Biotin carboxylase [Actinobacillus pleuropneumoniae serovar 12 str.
           1096]
          Length = 447

 Score = 74.8 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 80/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         L  DK+ +   +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAEQVENSGFTFIGPTADVIRLMGDKVSAINAMKKAGVPCVPGSDG 136

Query: 112 ---LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
                     +    I  P +IK   GG   G+ V+  ++ +   +     ++ +  + D
Sbjct: 137 PVGNDPAKNKEIAKRIGYPVIIKASGGGGGRGMRVVYNEKDLEESIAMTKAEAKAAFNND 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+Y++    +   V+ D   +   +A           K          PA  I  +
Sbjct: 197 MVYMEKYLENPRHIEIQVLADTHGNAVYLAERDCSMQRRHQK-----VVEEAPAPGITPE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + K +      A + IG RG    +FLF   + + +++E+N 
Sbjct: 252 LRKFIGERCANACREIGYRGAGTFEFLF--ENGEFYFIEMNT 291


>gi|288923686|ref|ZP_06417787.1| Carbamoyl-phosphate synthase L chain ATP-binding [Frankia sp.
           EUN1f]
 gi|288344958|gb|EFC79386.1| Carbamoyl-phosphate synthase L chain ATP-binding [Frankia sp.
           EUN1f]
          Length = 448

 Score = 74.8 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 77/222 (34%), Gaps = 23/222 (10%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+     +     + +        A   DK  ++++++  G+P+ P    
Sbjct: 77  AVHPGYGFLSENADFAEVCAAEGLTFIGPPPEVMARLGDKAVARRIMAEAGLPLLPG--- 133

Query: 114 NRFTMDSQH-------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNH 162
           +R T D           I  P ++K   GG   G+ V+    +           + +   
Sbjct: 134 SRDTPDQPEAAAAVAAEIGYPVIVKAAAGGGGRGMTVVHDADAFARAYRHTRATAQAVFG 193

Query: 163 GDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL 221
             +L +E+Y+     +   V+ D   +   +            K             +P 
Sbjct: 194 DGRLYVERYLPSARHVEVQVLADTHGNAVHLGARDCSLQRRHQK----LVEETPAPGLPA 249

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
           ++ + +   A     A G  G    +FL DP  R  +++E+N
Sbjct: 250 EVVEPLCAAAVRGTLASGYVGAGTFEFLVDPQGR-FYFMEVN 290


>gi|257087002|ref|ZP_05581363.1| carbamoyl-phosphate synthase [Enterococcus faecalis D6]
 gi|256995032|gb|EEU82334.1| carbamoyl-phosphate synthase [Enterococcus faecalis D6]
          Length = 1060

 Score = 74.8 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 50/296 (16%), Positives = 108/296 (36%), Gaps = 34/296 (11%)

Query: 25  ALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNVLHGNFG 63
           AL++ G++V  ++        D+ +                +L   +PD     L G  G
Sbjct: 36  ALKEEGYEVVLVNSNPATIMTDKEIADHVYIEPITLEFVSRILRKERPDALLPTLGGQTG 95

Query: 64  EDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFT 117
            +  ++     IL+ L +    + + A   + D+   KQ++     P+  S +VN     
Sbjct: 96  LNMAMELSESGILDELNVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIVNTVEQA 155

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IE 176
           +     I  P +++P       G  +   ++ +          +   Q LIE+ + G  E
Sbjct: 156 VAFAKRIGYPIIVRPAFTLGGTGGGMCDTEEELRQIAENGLKLSPVTQCLIEKSIAGFKE 215

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +   VM D++ +   I V   + +     ++  +        +    Y+ ++  +    +
Sbjct: 216 IEYEVMRDSADNA--IVVCNMENFDPVGIHTGDSIVFAPSQTLSDYEYQMLRDASLKIIR 273

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           A+   G        DP S   + +E+N  P ++  S     +   GY   +L   +
Sbjct: 274 ALKIEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAKI 325



 Score = 68.2 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 25/221 (11%), Positives = 71/221 (32%), Gaps = 13/221 (5%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--QHLISPPYVIKPL 133
            +    + I     + ++   +Q +    +P  P                I  P +++P 
Sbjct: 650 GVKILGTTIEDLDRAENRDLFEQALQELAIPQPPGDTATSAEEAIVIADRIGYPVLVRPS 709

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
                  + +++  + +   +  +   +    +L++ Y+ G E     + D    +    
Sbjct: 710 YVLGGRAMEIVENQKDLEDYMRHAVKASPEHPVLVDSYLLGQECEVDAICDGETVLIPGI 769

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
           +   +           +S  V P + +  +I   +          + C G+    F+   
Sbjct: 770 MEHIERAGVHS----GDSMAVYPPQYLSQEIQATIADYTKKLALGLNCVGMMNIQFVIHE 825

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
              +V+ +E+N +   T     P ++   G    ++    +
Sbjct: 826 --NRVYVIEVNPRASRT----VPFLSKITGIPMAQVATKAI 860


>gi|256961781|ref|ZP_05565952.1| carbamoyl-phosphate synthase [Enterococcus faecalis Merz96]
 gi|256952277|gb|EEU68909.1| carbamoyl-phosphate synthase [Enterococcus faecalis Merz96]
          Length = 1060

 Score = 74.8 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 50/296 (16%), Positives = 108/296 (36%), Gaps = 34/296 (11%)

Query: 25  ALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNVLHGNFG 63
           AL++ G++V  ++        D+ +                +L   +PD     L G  G
Sbjct: 36  ALKEEGYEVVLVNSNPATIMTDKEIADHVYIEPITLEFVSRILRKERPDALLPTLGGQTG 95

Query: 64  EDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFT 117
            +  ++     IL+ L +    + + A   + D+   KQ++     P+  S +VN     
Sbjct: 96  LNMAMELSESGILDELNVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIVNTVEQA 155

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IE 176
           +     I  P +++P       G  +   ++ +          +   Q LIE+ + G  E
Sbjct: 156 VAFAKRIGYPIIVRPAFTLGGTGGGMCDTEEELRQIAENGLKLSPVTQCLIEKSIAGFKE 215

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +   VM D++ +   I V   + +     ++  +        +    Y+ ++  +    +
Sbjct: 216 IEYEVMRDSADNA--IVVCNMENFDPVGIHTGDSIVFAPSQTLSDYEYQMLRDASLKIIR 273

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           A+   G        DP S   + +E+N  P ++  S     +   GY   +L   +
Sbjct: 274 ALKIEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAKI 325



 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/221 (11%), Positives = 71/221 (32%), Gaps = 13/221 (5%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--QHLISPPYVIKPL 133
            +    + I     + ++   +Q +    +P  P                I  P +++P 
Sbjct: 650 GVKILGTTIEDLDRAENRDLFEQALQELAIPQPPGDTATSAEEAVVIADRIGYPVLVRPS 709

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
                  + +++  + +   +  +   +    +L++ Y+ G E     + D    +    
Sbjct: 710 YVLGGRAMEIVENQKDLEDYMRHAVKASPEHPVLVDSYLLGQECEVDAICDGETVLIPGI 769

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
           +   +           +S  V P + +  +I   +          + C G+    F+   
Sbjct: 770 MEHIERAGVHS----GDSMAVYPPQYLSQEIQATIADYTKKLALGLNCVGMMNIQFVIHE 825

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
              +V+ +E+N +   T     P ++   G    ++    +
Sbjct: 826 --NRVYVIEVNPRASRT----VPFLSKITGIPMAQVATKAI 860


>gi|256762645|ref|ZP_05503225.1| carbamoyl-phosphate synthase [Enterococcus faecalis T3]
 gi|256959125|ref|ZP_05563296.1| carbamoyl-phosphate synthase [Enterococcus faecalis DS5]
 gi|256683896|gb|EEU23591.1| carbamoyl-phosphate synthase [Enterococcus faecalis T3]
 gi|256949621|gb|EEU66253.1| carbamoyl-phosphate synthase [Enterococcus faecalis DS5]
          Length = 1060

 Score = 74.8 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 50/296 (16%), Positives = 108/296 (36%), Gaps = 34/296 (11%)

Query: 25  ALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNVLHGNFG 63
           AL++ G++V  ++        D+ +                +L   +PD     L G  G
Sbjct: 36  ALKEEGYEVVLVNSNPATIMTDKEIADHVYIEPITLEFVSRILRKERPDALLPTLGGQTG 95

Query: 64  EDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFT 117
            +  ++     IL+ L +    + + A   + D+   KQ++     P+  S +VN     
Sbjct: 96  LNMAMELSESGILDELNVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIVNTVEQA 155

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IE 176
           +     I  P +++P       G  +   ++ +          +   Q LIE+ + G  E
Sbjct: 156 VAFAKRIGYPIIVRPAFTLGGTGGGMCDTEEELRQIAENGLKLSPVTQCLIEKSIAGFKE 215

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +   VM D++ +   I V   + +     ++  +        +    Y+ ++  +    +
Sbjct: 216 IEYEVMRDSADNA--IVVCNMENFDPVGIHTGDSIVFAPSQTLSDYEYQMLRDASLKIIR 273

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           A+   G        DP S   + +E+N  P ++  S     +   GY   +L   +
Sbjct: 274 ALKIEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAKI 325



 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/221 (11%), Positives = 71/221 (32%), Gaps = 13/221 (5%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--QHLISPPYVIKPL 133
            +    + I     + ++   +Q +    +P  P                I  P +++P 
Sbjct: 650 GVKILGTTIEDLDRAENRDLFEQALQELEIPQPPGDTATSAEEAVVIADRIGYPVLVRPS 709

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
                  + +++  + +   +  +   +    +L++ Y+ G E     + D    +    
Sbjct: 710 YVLGGRAMEIVENQKDLEDYMRHAVKASPEHPVLVDSYLLGQECEVDAICDGETVLIPGI 769

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
           +   +           +S  V P + +  +I   +          + C G+    F+   
Sbjct: 770 MEHIERAGVHS----GDSMAVYPPQYLSQEIQATIADYTKKLALGLNCVGMMNIQFVIHE 825

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
              +V+ +E+N +   T     P ++   G    ++    +
Sbjct: 826 --NRVYVIEVNPRASRT----VPFLSKITGIPMAQVATKAI 860


>gi|256619209|ref|ZP_05476055.1| carbamoyl-phosphate synthase [Enterococcus faecalis ATCC 4200]
 gi|256598736|gb|EEU17912.1| carbamoyl-phosphate synthase [Enterococcus faecalis ATCC 4200]
          Length = 1060

 Score = 74.8 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 50/296 (16%), Positives = 108/296 (36%), Gaps = 34/296 (11%)

Query: 25  ALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNVLHGNFG 63
           AL++ G++V  ++        D+ +                +L   +PD     L G  G
Sbjct: 36  ALKEEGYEVVLVNSNPATIMTDKEIADHVYIEPITLEFVSRILRKERPDALLPTLGGQTG 95

Query: 64  EDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFT 117
            +  ++     IL+ L +    + + A   + D+   KQ++     P+  S +VN     
Sbjct: 96  LNMAMELSESGILDELNVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIVNTVEQA 155

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IE 176
           +     I  P +++P       G  +   ++ +          +   Q LIE+ + G  E
Sbjct: 156 VAFAKRIGYPIIVRPAFTLGGTGGGMCDTEEELRQIAENGLKLSPVTQCLIEKSIAGFKE 215

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +   VM D++ +   I V   + +     ++  +        +    Y+ ++  +    +
Sbjct: 216 IEYEVMRDSADNA--IVVCNMENFDPVGIHTGDSIVFAPSQTLSDYEYQMLRDASLKIIR 273

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           A+   G        DP S   + +E+N  P ++  S     +   GY   +L   +
Sbjct: 274 ALKIEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAKI 325



 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/221 (11%), Positives = 71/221 (32%), Gaps = 13/221 (5%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--QHLISPPYVIKPL 133
            +    + I     + ++   +Q +    +P  P                I  P +++P 
Sbjct: 650 GVKILGTTIEDLDRAENRDLFEQALQELAIPQPPGDTATSAEEAVVIADRIGYPVLVRPS 709

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
                  + +++  + +   +  +   +    +L++ Y+ G E     + D    +    
Sbjct: 710 YVLGGRAMEIVENQKDLEDYMRHAVKASPEHPVLVDSYLLGQECEVDAICDGETVLIPGI 769

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
           +   +           +S  V P + +  +I   +          + C G+    F+   
Sbjct: 770 MEHIERAGVHS----GDSMAVYPPQYLSQEIQATIADYTKKLALGLNCVGMMNIQFVIHE 825

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
              +V+ +E+N +   T     P ++   G    ++    +
Sbjct: 826 --NRVYVIEVNPRASRT----VPFLSKITGIPMAQVATKAI 860


>gi|255972648|ref|ZP_05423234.1| carbamoyl-phosphate synthase [Enterococcus faecalis T1]
 gi|255963666|gb|EET96142.1| carbamoyl-phosphate synthase [Enterococcus faecalis T1]
 gi|323480875|gb|ADX80314.1| carbamoyl-phosphate synthase pyrimidine-specific large chain
           [Enterococcus faecalis 62]
          Length = 1060

 Score = 74.8 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 50/296 (16%), Positives = 108/296 (36%), Gaps = 34/296 (11%)

Query: 25  ALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNVLHGNFG 63
           AL++ G++V  ++        D+ +                +L   +PD     L G  G
Sbjct: 36  ALKEEGYEVVLVNSNPATIMTDKEIADHVYIEPITLEFVSRILRKERPDALLPTLGGQTG 95

Query: 64  EDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFT 117
            +  ++     IL+ L +    + + A   + D+   KQ++     P+  S +VN     
Sbjct: 96  LNMAMELSESGILDELNVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIVNTVEQA 155

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IE 176
           +     I  P +++P       G  +   ++ +          +   Q LIE+ + G  E
Sbjct: 156 VAFAKRIGYPIIVRPAFTLGGTGGGMCDTEEELRQIAENGLKLSPVTQCLIEKSIAGFKE 215

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +   VM D++ +   I V   + +     ++  +        +    Y+ ++  +    +
Sbjct: 216 IEYEVMRDSADNA--IVVCNMENFDPVGIHTGDSIVFAPSQTLSDYEYQMLRDASLKIIR 273

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           A+   G        DP S   + +E+N  P ++  S     +   GY   +L   +
Sbjct: 274 ALKIEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAKI 325



 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/221 (11%), Positives = 71/221 (32%), Gaps = 13/221 (5%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--QHLISPPYVIKPL 133
            +    + I     + ++   +Q +    +P  P                I  P +++P 
Sbjct: 650 GVKILGTTIEDLDRAENRDLFEQALQELAIPQPPGDTATSAEEAVVIADRIGYPVLVRPS 709

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
                  + +++  + +   +  +   +    +L++ Y+ G E     + D    +    
Sbjct: 710 YVLGGRAMEIVENQKDLEDYMRHAVKASPEHPVLVDSYLLGQECEVDAICDGETVLIPGI 769

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
           +   +           +S  V P + +  +I   +          + C G+    F+   
Sbjct: 770 MEHIERAGVHS----GDSMAVYPPQYLSQEIQATIADYTKKLALGLNCVGMMNIQFVIHE 825

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
              +V+ +E+N +   T     P ++   G    ++    +
Sbjct: 826 --NRVYVIEVNPRASRT----VPFLSKITGIPMAQVATKAI 860


>gi|300860878|ref|ZP_07106965.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecalis
           TUSoD Ef11]
 gi|300849917|gb|EFK77667.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecalis
           TUSoD Ef11]
          Length = 1060

 Score = 74.8 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 50/296 (16%), Positives = 108/296 (36%), Gaps = 34/296 (11%)

Query: 25  ALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNVLHGNFG 63
           AL++ G++V  ++        D+ +                +L   +PD     L G  G
Sbjct: 36  ALKEEGYEVVLVNSNPATIMTDKEIADHVYIEPITLEFVSRILRKERPDALLPTLGGQTG 95

Query: 64  EDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFT 117
            +  ++     IL+ L +    + + A   + D+   KQ++     P+  S +VN     
Sbjct: 96  LNMAMELSESGILDELNVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIVNTVEQA 155

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IE 176
           +     I  P +++P       G  +   ++ +          +   Q LIE+ + G  E
Sbjct: 156 VAFAKRIGYPIIVRPAFTLGGTGGGMCDTEEELRQIAENGLKLSPVTQCLIEKSIAGFKE 215

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +   VM D++ +   I V   + +     ++  +        +    Y+ ++  +    +
Sbjct: 216 IEYEVMRDSADNA--IVVCNMENFDPVGIHTGDSIVFAPSQTLSDYEYQMLRDASLKIIR 273

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           A+   G        DP S   + +E+N  P ++  S     +   GY   +L   +
Sbjct: 274 ALKIEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAKI 325



 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/221 (11%), Positives = 71/221 (32%), Gaps = 13/221 (5%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--QHLISPPYVIKPL 133
            +    + I     + ++   +Q +    +P  P                I  P +++P 
Sbjct: 650 GVKILGTTIEDLDRAENRDLFEQALQELAIPQPPGDTATSAEEAVVIADRIGYPVLVRPS 709

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
                  + +++  + +   +  +   +    +L++ Y+ G E     + D    +    
Sbjct: 710 YVLGGRAMEIVENQKDLEDYMRHAVKASPEHPVLVDSYLLGQECEVDAICDGETVLIPGI 769

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
           +   +           +S  V P + +  +I   +          + C G+    F+   
Sbjct: 770 MEHIERAGVHS----GDSMAVYPPQYLSQEIQATIADYTKKLALGLNCVGMMNIQFVIHE 825

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
              +V+ +E+N +   T     P ++   G    ++    +
Sbjct: 826 --NRVYVIEVNPRASRT----VPFLSKITGIPMAQVATKAI 860


>gi|195952477|ref|YP_002120767.1| phosphoribosylglycinamide formyltransferase 2 [Hydrogenobaculum sp.
           Y04AAS1]
 gi|195932089|gb|ACG56789.1| phosphoribosylglycinamide formyltransferase 2 [Hydrogenobaculum sp.
           Y04AAS1]
          Length = 394

 Score = 74.8 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 45/277 (16%), Positives = 95/277 (34%), Gaps = 53/277 (19%)

Query: 19  GKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIP 78
            +  A       + V  +     +  +     PD     +           A++EL +  
Sbjct: 47  AQQVAQ-----RYYVIDMKNKELLKSIAYREAPDFIVPEIEAIN-----TDALIELEQ-- 94

Query: 79  YTHSGILASALSMDKMRSKQVV------SSCGVPVCPSILVNRFTM--DSQHLISPPYVI 130
                I+  A ++ K    ++          G+P      VN F     +   +  P V+
Sbjct: 95  -EGFNIVPCAKAV-KYTMNRIAIRRFAAEELGLPTSKYKFVNTFEELKQAAKELGYPVVV 152

Query: 131 KPLKGGSSLGIIVIKKDQSIPLD--LLQSSSWNHGDQLLIEQYVD---------GIELTC 179
           KP+   S  G  ++ K+Q +     + +  +     +L++E+++D               
Sbjct: 153 KPVMSSSGKGQSIVYKEQDLEKAFYIAREKARGDSKELIVEEFIDFDYEITMLTVRTKNQ 212

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
           G++      +  I V + D+Y               P  +   + ++ Q +A    + +G
Sbjct: 213 GIL--FCPPIGHIQV-EGDYY-----------ESWQPHPMDDKLLQKAQNIARTVVEGLG 258

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQP---GM-TPVS 272
             GI   +        +V + EI+ +P   GM T +S
Sbjct: 259 GYGIFGCELFVRK--DEVIFNEISPRPHDTGMVTMIS 293


>gi|116328910|ref|YP_798630.1| carbamoyl phosphate synthase large subunit [Leptospira
           borgpetersenii serovar Hardjo-bovis L550]
 gi|116121654|gb|ABJ79697.1| Carbamoyl-phosphate synthase (glutamine- hydrolyzing), large
           subunit [Leptospira borgpetersenii serovar Hardjo-bovis
           L550]
          Length = 1106

 Score = 74.8 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 55/278 (19%), Positives = 104/278 (37%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG   A AL++ G +V  +         D D              V  +L   KPD    
Sbjct: 29  SGTQAAKALKEKGIRVILLNSNPATIMTDPDLADATYVEPMTVPVVQKILEKEKPDAILP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      +LE   +    + + A   + D+   K+ +   GV V  S L
Sbjct: 89  TVGGQTALNLALACNGAGLLEKYNVELIGAKVDAIKKAEDRELFKKAMEKIGVRVPASGL 148

Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            N  T  ++    +  P +++P       G  +   +++    + +    +   Q+L+E+
Sbjct: 149 ANNLTDAAEIKKKLGLPLIVRPAFTLGGTGGGIAYTEETFEEVVSKGLKASPISQVLLEE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            V G  E    VM D + +V  I   ++ D           +S  V P + +    Y+ +
Sbjct: 209 SVLGWKEFELEVMRDLADNVVIICSIENIDPMGVHT----GDSITVAPQQTLSDKEYQNL 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           + ++    + IG   G S   F  +P +  V  +E+N 
Sbjct: 265 RDMSIAIIREIGVETGGSNIQFAVNPANGDVIVIEMNP 302



 Score = 47.8 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/198 (13%), Positives = 77/198 (38%), Gaps = 12/198 (6%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYV 129
           LE   +    +   +   + D+ R  +V+    +    S +        +    +  P +
Sbjct: 682 LERKGVKILGTSPDSIDRAEDRKRFVEVLEKLKLRSPESGIATSMEEAREIAQNVKYPIL 741

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTC-GVMGDASL 187
           ++P        +++I +++ +   + ++   +    LLI+ ++ D +E+    +     +
Sbjct: 742 VRPSYVLGGRAMLIINEEKELDRYMEKAEEISKDRPLLIDSFLEDAVEVDVDALCDGKEV 801

Query: 188 DVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRS 246
            VT I       +  E    S +S  +LP + +  ++  E+++        +  +G+   
Sbjct: 802 FVTGIME-----HIEEAGIHSGDSACILPPQTLSKNMMDEIRKATVDLALELQVKGLINI 856

Query: 247 DFLFDPLSRKVFWLEINV 264
            +     +  ++ +E+N 
Sbjct: 857 QYAV--KNEILYVIEVNP 872


>gi|15669568|ref|NP_248381.1| carbamoyl-phosphate synthase subunit CarB1 [Methanocaldococcus
           jannaschii DSM 2661]
 gi|22095496|sp|Q58773|CARB1_METJA RecName: Full=Carbamoyl-phosphate synthase large chain, N-terminal
           section; AltName: Full=Carbamoyl-phosphate synthetase
           ammonia chain
 gi|2826402|gb|AAB99385.1| carbamoyl-phosphate synthase, medium subunit (carB1)
           [Methanocaldococcus jannaschii DSM 2661]
          Length = 482

 Score = 74.8 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 47/277 (16%), Positives = 94/277 (33%), Gaps = 34/277 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVDRSVGLVLA------------HLKPDLAFN 56
           SG     AL++ G     +         D D +  + L               +PD    
Sbjct: 26  SGSQACKALKEEGIYTILVNSNPATIQTDTDMADKVYLEPLHPTIVEKIIEKERPDAILP 85

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G  G +  +    + IL+   I    S I    ++ D+    + ++    PV     
Sbjct: 86  TMGGQTGLNLALELHRRGILDKYGIKLLGSNIRTIEIAEDRELFAEAMAEINEPVTKCKA 145

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           VN     ++    I  P +++P       G  +    + +     +   ++  +Q+LI++
Sbjct: 146 VNSVDEAVEFAEEIGYPVIVRPAFTLGGTGGGIAHNKEELIDITSKGLKYSIINQVLIDE 205

Query: 171 YVDG-IELTCGVMGD-ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            V G  E    VM D     +    +   D            S  V P + +P + Y+++
Sbjct: 206 SVLGWKEFELEVMRDRKDTCIIVCGMENIDPMGIHT----GESIVVSPIQTLPDEFYQKL 261

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +  A    + +G  G     F  +    +   +E+N 
Sbjct: 262 RNAAIKIIRHLGIEGGCNIQFAVNKEMTEYRVIEVNP 298


>gi|319786021|ref|YP_004145496.1| acetyl-CoA carboxylase, biotin carboxylase [Pseudoxanthomonas
           suwonensis 11-1]
 gi|317464533|gb|ADV26265.1| acetyl-CoA carboxylase, biotin carboxylase [Pseudoxanthomonas
           suwonensis 11-1]
          Length = 455

 Score = 74.8 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 39/225 (17%), Positives = 82/225 (36%), Gaps = 27/225 (12%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+      +E     +         L  DK+ + + + + GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAERVEQSGFIFIGPKADTIRLMGDKVEAIRAMKAAGVPCVPGSGG 136

Query: 111 -----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWN 161
                I+ N         I  P +IK   GG   G+ V+  + ++   +     ++ +  
Sbjct: 137 PLGDDIVTNAR---IAREIGYPVIIKAAGGGGGRGMRVVHAEAALKAAIETTKTEAKAAF 193

Query: 162 HGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-I 219
              ++ +E+Y++    +   V+ D   +   +            K          PA  I
Sbjct: 194 GNGEVYMEKYLENPRHVEIQVLADGQGNAIHLGERDCSMQRRHQK-----VVEEAPAPGI 248

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +   E+ ++   A   IG RG    +FL+   + + +++E+N 
Sbjct: 249 TAEQRAEIGKVCTEACIRIGYRGAGTFEFLY--ENGRFYFIEMNT 291


>gi|301802065|emb|CBW34797.1| carbamoyl-phosphate synthase large chain [Streptococcus pneumoniae
           INV200]
          Length = 1058

 Score = 74.8 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 26/225 (11%), Positives = 74/225 (32%), Gaps = 13/225 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--QHLISPPYV 129
           L    +    + +     + D+   +Q +    +P  P          +     I  P +
Sbjct: 646 LAKAGVTILGTQVADLDRAEDRDLFEQALKELDIPQPPGQTATNEEEAALAARKIGFPVL 705

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           ++P        + +++ ++ +   +  +   +    +L++ Y+ G E     + D    +
Sbjct: 706 VRPSYVLGGRAMEIVENEEDLRSYMRTAVKASPDHPVLVDSYIVGQECEVDAISDGKNVL 765

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               V   +           +S  V P + +   + + +          + C G+    F
Sbjct: 766 IPGIVEHIERAGVHS----GDSMAVYPPQTLSQKVQETIADYTKRLAIGLHCLGMMNIQF 821

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +      KV+ +E+N +   T     P ++        ++   ++
Sbjct: 822 VI--KDEKVYVIEVNPRASRT----VPFLSKVTNIPMAQVATKLI 860



 Score = 67.5 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 54/302 (17%), Positives = 114/302 (37%), Gaps = 37/302 (12%)

Query: 20  KACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNVL 58
           +AC S L++ G++V  ++        D+ +                +L    PD     L
Sbjct: 32  QACLS-LKEEGYEVVLVNSNPATIMTDKEIADKVYIEPITLEFVTRILRKEGPDALLPTL 90

Query: 59  HGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
            G  G +  ++     IL+ L +    + + A   + D+   KQ++     P+  S +VN
Sbjct: 91  GGQTGLNMAMELSKNGILDELGVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIVN 150

Query: 115 --RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                +     I  P +++P       G  +   ++ +          +   Q LIE+ +
Sbjct: 151 TVEEAVAFAATIGYPVIVRPAFTLGGTGGGMCANEKELREITENGLKLSPVTQCLIERSI 210

Query: 173 DG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRL 230
            G  E+   VM D++ +   + V   + +   +   + +S    PA+ +     + ++  
Sbjct: 211 AGFKEIEYEVMRDSADNA--LVVCNMENFD-PVGIHTGDSIVFAPAQTMSDYENQMLRDA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    +A+   G        DP S K + +E+N  P ++  S     +   GY   +L  
Sbjct: 268 SLSIIRALKIEGGCNVQLALDPNSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325


>gi|194467533|ref|ZP_03073520.1| phosphoribosylaminoimidazole carboxylase, ATPase subunit
           [Lactobacillus reuteri 100-23]
 gi|194454569|gb|EDX43466.1| phosphoribosylaminoimidazole carboxylase, ATPase subunit
           [Lactobacillus reuteri 100-23]
          Length = 384

 Score = 74.8 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 43/207 (20%), Positives = 88/207 (42%), Gaps = 15/207 (7%)

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQ 121
           E+  + A+ ++ +  Y   G      + +++R K  +   GV   P + V+      D+ 
Sbjct: 88  ENVDLNALEDVQDRVYLPQGTNLLYTTKNRLREKNFLRQAGVKTAPFMAVHTLAELKDAV 147

Query: 122 HLISPPYVIKPLKGG-SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTC 179
             I  P V+K  +GG    G  V++       DL + +        ++E +V    E + 
Sbjct: 148 KKIGYPAVLKTSEGGYDGHGQEVLRNKD----DLDKCAPILATGDCILEGWVPFSRECSV 203

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
            V  + + ++T   V ++      L  S      ++PA+I  ++ ++ Q++A    QAI 
Sbjct: 204 MVGRNENGEITVFPVSENIHRDEILHLS------IVPARISSELQQKAQKIAVQIAQAIN 257

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQP 266
            RGI   +      + K++  E+  +P
Sbjct: 258 LRGILGVEMFVT-DNEKIYINELAPRP 283


>gi|159043275|ref|YP_001532069.1| carbamoyl-phosphate synthase L chain ATP-binding [Dinoroseobacter
           shibae DFL 12]
 gi|157911035|gb|ABV92468.1| carbamoyl-phosphate synthase L chain ATP-binding [Dinoroseobacter
           shibae DFL 12]
          Length = 681

 Score = 74.8 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 73/221 (33%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+ L    LE   + +      A     DK+ SK++     V   P  + 
Sbjct: 77  AVHPGYGFLSENKLFAEALEKEGVAFIGPPANAIEAMGDKITSKKIAQEANVSTVPGYMG 136

Query: 114 NRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGD 164
                D        I  P +IK   GG   G+ +   D              ++S+   D
Sbjct: 137 LIADADEAVKISGEIGYPVMIKASAGGGGKGMRIAWNDAEAREGFQSSKNEAANSFG-DD 195

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           ++ IE++V     +   V+ D   +   +   +        K             +    
Sbjct: 196 RIFIEKFVTQPRHIEIQVLADTHGNCIYLGERECSIQRRNQK----VVEEAPSPFLDEAT 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            K +   +    QA+G       +F+ D   R  ++LE+N 
Sbjct: 252 RKAMGEQSCALAQAVGYASAGTVEFIVDG-DRNFYFLEMNT 291


>gi|255975700|ref|ZP_05426286.1| carbamoyl-phosphate synthase [Enterococcus faecalis T2]
 gi|255968572|gb|EET99194.1| carbamoyl-phosphate synthase [Enterococcus faecalis T2]
          Length = 1060

 Score = 74.8 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 50/296 (16%), Positives = 108/296 (36%), Gaps = 34/296 (11%)

Query: 25  ALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNVLHGNFG 63
           AL++ G++V  ++        D+ +                +L   +PD     L G  G
Sbjct: 36  ALKEEGYEVVLVNSNPATIMTDKEIADHVYIEPITLEFVSRILRKERPDALLPTLGGQTG 95

Query: 64  EDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFT 117
            +  ++     IL+ L +    + + A   + D+   KQ++     P+  S +VN     
Sbjct: 96  LNMAMELSGSGILDELNVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIVNTVEQA 155

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IE 176
           +     I  P +++P       G  +   ++ +          +   Q LIE+ + G  E
Sbjct: 156 VAFAKQIGYPIIVRPAFTLGGTGGGMCDTEEELRQIAENGLKLSPVTQCLIEKSIAGFKE 215

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +   VM D++ +   I V   + +     ++  +        +    Y+ ++  +    +
Sbjct: 216 IEYEVMRDSADNA--IVVCNMENFDPVGIHTGDSIVFAPSQTLSDYEYQMLRDASLKIIR 273

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           A+   G        DP S   + +E+N  P ++  S     +   GY   +L   +
Sbjct: 274 ALKIEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAKI 325



 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/221 (11%), Positives = 71/221 (32%), Gaps = 13/221 (5%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--QHLISPPYVIKPL 133
            +    + I     + ++   +Q +    +P  P                I  P +++P 
Sbjct: 650 GVKILGTTIEDLDRAENRDLFEQALQELAIPQPPGDTATSAEEAVVIADRIGYPVLVRPS 709

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
                  + +++  + +   +  +   +    +L++ Y+ G E     + D    +    
Sbjct: 710 YVLGGRAMEIVENQKDLEDYMRHAVKASPEHPVLVDSYLLGQECEVDAICDGETVLIPGI 769

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
           +   +           +S  V P + +  +I   +          + C G+    F+   
Sbjct: 770 MEHIERAGVHS----GDSMAVYPPQYLSQEIQATIADYTKKLALGLNCVGMMNIQFVIHE 825

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
              +V+ +E+N +   T     P ++   G    ++    +
Sbjct: 826 --NRVYVIEVNPRASRT----VPFLSKITGIPMAQVATKAI 860


>gi|323340647|ref|ZP_08080899.1| pyruvate carboxylase [Lactobacillus ruminis ATCC 25644]
 gi|323091770|gb|EFZ34390.1| pyruvate carboxylase [Lactobacillus ruminis ATCC 25644]
          Length = 1142

 Score = 74.8 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 79/221 (35%), Gaps = 20/221 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+       E   I +    +    +  DK+ +K+V  + G+   P    
Sbjct: 77  AIHPGYGFLSENEEFAQKCEDAGIIFIGPTVKQLQMFGDKVEAKEVAHAAGLETIPGTED 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
            +       +  H    P ++K   GG   G+ V+  D  +P    ++ S        D+
Sbjct: 137 PVKSLEEVQNFAHKYGYPIMVKAAMGGGGRGMRVVNSDDELPDAYNRARSEAKQSFGDDE 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDI 223
           L +E+Y++    +   ++GD   +V              ++          P   +  D 
Sbjct: 197 LYVEKYLENPKHIEVQILGDKHGNVL-----HLFERDCSVQRRHQKVIEFAPSIILSDDR 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            KE+   A    ++I  +     +FL        +++E+N 
Sbjct: 252 RKEICDAAVRLAKSIHYQNAGTVEFLVT--DDAFYFIEVNP 290


>gi|255536279|ref|YP_003096650.1| acetyl-CoA carboxylase, biotin carboxylase [Flavobacteriaceae
           bacterium 3519-10]
 gi|255342475|gb|ACU08588.1| acetyl-CoA carboxylase, biotin carboxylase [Flavobacteriaceae
           bacterium 3519-10]
          Length = 450

 Score = 74.4 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 80/220 (36%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+     I +   I +  +         DK  +K  +   GVP  P    
Sbjct: 77  AIHPGYGFLSENSNFSRICQENGIKFIGATPDQIDRMGDKANAKATMKEAGVPCVPGSEG 136

Query: 112 LVNRFTMDS--QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL----DLLQSSSWNHGDQ 165
           L++ +   +     +  P +IK   GG   G+  + K + +       + ++++      
Sbjct: 137 LIDSYETAAKLAAEMGYPVMIKATAGGGGKGMRAVWKAEDLHEHWDSAVQEATAAFGNGG 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+ + +   +   V GD       ++           K     +       +  ++ 
Sbjct: 197 MYMEKLIVEPRHIEIQVAGDQYGKACHLSERDCSVQRRNQK----LTEETPSPFMTDELR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +++   A  A + I   G+   +FL D   R  +++E+N 
Sbjct: 253 EKMGAAAVKAAEYIKYEGVGTIEFLVDK-DRNFYFMEMNT 291


>gi|224476637|ref|YP_002634243.1| acetyl-CoA carboxylase biotin carboxylase subunit [Staphylococcus
           carnosus subsp. carnosus TM300]
 gi|222421244|emb|CAL28058.1| biotin carboxylase (subunit of acetyl-CoA carboxylase)
           [Staphylococcus carnosus subsp. carnosus TM300]
          Length = 450

 Score = 74.4 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/221 (14%), Positives = 80/221 (36%), Gaps = 18/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+G    + E  ++ +      +      K  +K+ +    VPV P    
Sbjct: 76  AVHPGYGFLSENGDFAELCEACQLKFIGPNYESIQKMGIKDVAKEEMIRANVPVVPGSEG 135

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP-----LDLLQSSSWNHGD 164
            +        +   I  P +IK   GG   GI V + ++ +            +++ +G 
Sbjct: 136 LVESIEDAKKTAEEIGYPVIIKATAGGGGKGIRVARDEKELENGYKMTQQEAETAFGNGG 195

Query: 165 QLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
             L E++++    +   +MGD   +V ++            +             +  + 
Sbjct: 196 LYL-EKFIENFRHIEFQIMGDQFGNVIQLGERDCTI----QRRMQKLVEEAPSPILTAEK 250

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             E+   +  A +A+        ++++D  +   +++E+N 
Sbjct: 251 RAEMGAASIRAAKAVNYENAGTIEYIYDLDTDDFYFMEMNT 291


>gi|319778421|ref|YP_004129334.1| Carbamoyl-phosphate synthase large chain [Taylorella equigenitalis
           MCE9]
 gi|317108445|gb|ADU91191.1| Carbamoyl-phosphate synthase large chain [Taylorella equigenitalis
           MCE9]
          Length = 1081

 Score = 74.4 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/198 (15%), Positives = 79/198 (39%), Gaps = 12/198 (6%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           LEL  +P   +   +  ++ D+ R ++++    +   P+         +     I  P V
Sbjct: 655 LELNGVPILGTSPESIDIAEDRERFQKLLQKLNLKQPPNRTARTEEEALTLAKEIGYPLV 714

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD---GIELTCGVMGDAS 186
           ++P        + ++     +   +  +   ++   +L+++Y++    +++ C   G+  
Sbjct: 715 VRPSYVLGGRAMEIVHDQMDLERYMTAAVKVSNDSPVLLDRYLNDAIEVDVDCICDGNEV 774

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRS 246
                +   +         +S  ++  + P  +  +I  E++R   L  +A+  RG+   
Sbjct: 775 FIAGVMEHIEQAGV-----HSGDSACSIPPHSLSKEIVDEIKRQTRLMAKALNVRGLMNV 829

Query: 247 DFLFDPLSRKVFWLEINV 264
            F     S +V+ LE+N 
Sbjct: 830 QFAI--QSNEVYVLEVNP 845



 Score = 70.5 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 62/324 (19%), Positives = 115/324 (35%), Gaps = 55/324 (16%)

Query: 18  SGKACASALEDAGF-------------------KVSQIDVD--RSVGLVLAHLKPDLAFN 56
           SG     AL+  G+                    V  I+    +S+  V+   KPD    
Sbjct: 29  SGAQACKALKAEGYRTILVNSNPATIMTDPETADVIYIEPITWKSLEKVIEIEKPDAILP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +    Q +LE   +    +   A   + D+M+ K+ +SS G+    S +
Sbjct: 89  TMGGQTALNCALELAKQGVLEKHGVELIGANAHAIEKAEDRMKFKEAMSSIGLESAKSGI 148

Query: 113 ---------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
                    V R   +       P VI+P       G  +    +      ++    +  
Sbjct: 149 AHSMDEAWDVQRRIAEEIGTAGFPVVIRPSFTLGGTGGGIAYNPEEFEAICMRGLEASPT 208

Query: 164 DQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPAK-IP 220
           ++LLIE+ + G  E    V+ D + +   I   ++ D           +S  V PA+ + 
Sbjct: 209 NELLIEESLLGWKEFEMEVVRDKADNCIIICSIENLDPMGVHT----GDSITVAPAQTLT 264

Query: 221 LDIYKEVQRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279
              Y+ ++  +    + IG   G S   F  +P + ++  +E+N  P ++  S     A 
Sbjct: 265 DKEYQIMRNASIAVLREIGVDTGGSNVQFAVNPANGRMIVIEMN--PRVSRSSALASKAT 322

Query: 280 -----------YAGYSFRELLLWM 292
                        GY+  ELL  +
Sbjct: 323 GFPIAKVASRLAVGYTLDELLNEI 346


>gi|254473954|ref|ZP_05087348.1| methylcrotonoyl-CoA carboxylase subunit alpha [Pseudovibrio sp.
           JE062]
 gi|211957064|gb|EEA92270.1| methylcrotonoyl-CoA carboxylase subunit alpha [Pseudovibrio sp.
           JE062]
          Length = 662

 Score = 74.4 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 39/225 (17%), Positives = 74/225 (32%), Gaps = 22/225 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      +E   + +      A      K  +K+++   GVPV P    
Sbjct: 77  AIHPGYGFLSENPEFVEAVEAAGLVFIGPPADAIRAMGLKDAAKKLMEESGVPVVPGYHG 136

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
           +    +        I  P +IK   GG   G+  +         L  +           +
Sbjct: 137 DNQDGEFLKAEAEKIGYPVLIKARAGGGGKGMRRVDDPADFIEALEGAQREGQSSFGDPR 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           +LIE+Y+     +   V  D   +               L+          PA  +  ++
Sbjct: 197 VLIEKYILSPRHIEVQVFCDGHGNAV-----HLFERDCSLQRRHQKVIEEAPAPGMTEEM 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR----KVFWLEINV 264
              +   A  A QA+G  G    +F+ D        + +++E+N 
Sbjct: 252 RNAMGEAAVKAAQAVGYEGAGTVEFIVDGSDGLRPDRFWFMEMNT 296


>gi|190151224|ref|YP_001969749.1| biotin carboxylase subunit of acetyl CoA carboxylase
           [Actinobacillus pleuropneumoniae serovar 7 str. AP76]
 gi|303252750|ref|ZP_07338911.1| biotin carboxylase subunit of acetyl CoA carboxylase
           [Actinobacillus pleuropneumoniae serovar 2 str. 4226]
 gi|307248940|ref|ZP_07530950.1| Biotin carboxylase [Actinobacillus pleuropneumoniae serovar 2 str.
           S1536]
 gi|307264573|ref|ZP_07546156.1| Biotin carboxylase [Actinobacillus pleuropneumoniae serovar 13 str.
           N273]
 gi|189916355|gb|ACE62607.1| biotin carboxylase subunit of acetyl CoA carboxylase
           [Actinobacillus pleuropneumoniae serovar 7 str. AP76]
 gi|302648400|gb|EFL78595.1| biotin carboxylase subunit of acetyl CoA carboxylase
           [Actinobacillus pleuropneumoniae serovar 2 str. 4226]
 gi|306854551|gb|EFM86744.1| Biotin carboxylase [Actinobacillus pleuropneumoniae serovar 2 str.
           S1536]
 gi|306870102|gb|EFN01863.1| Biotin carboxylase [Actinobacillus pleuropneumoniae serovar 13 str.
           N273]
          Length = 447

 Score = 74.4 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 80/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         L  DK+ +   +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAEQVENSGFTFIGPTADVIRLMGDKVSAINAMKKAGVPCVPGSDG 136

Query: 112 ---LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
                     +    I  P +IK   GG   G+ V+  ++ +   +     ++ +  + D
Sbjct: 137 PVGNDPAKNKEIAKRIGYPVIIKASGGGGGRGMRVVYNEKDLEESIAMTKAEAKAAFNND 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+Y++    +   V+ D   +   +A           K          PA  I  +
Sbjct: 197 MVYMEKYLENPRHIEIQVLADTHGNAVYLAERDCSMQRRHQK-----VVEEAPAPGITPE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + K +      A + IG RG    +FLF   + + +++E+N 
Sbjct: 252 LRKFIGERCANACREIGYRGAGTFEFLF--ENGEFYFIEMNT 291


>gi|56695998|ref|YP_166352.1| propionyl-CoA carboxylase, alpha subunit [Ruegeria pomeroyi DSS-3]
 gi|304445935|pdb|3N6R|A Chain A, Crystal Structure Of The Holoenzyme Of Propionyl-Coa
           Carboxylase (Pcc)
 gi|304445937|pdb|3N6R|C Chain C, Crystal Structure Of The Holoenzyme Of Propionyl-Coa
           Carboxylase (Pcc)
 gi|304445939|pdb|3N6R|E Chain E, Crystal Structure Of The Holoenzyme Of Propionyl-Coa
           Carboxylase (Pcc)
 gi|304445941|pdb|3N6R|G Chain G, Crystal Structure Of The Holoenzyme Of Propionyl-Coa
           Carboxylase (Pcc)
 gi|304445943|pdb|3N6R|I Chain I, Crystal Structure Of The Holoenzyme Of Propionyl-Coa
           Carboxylase (Pcc)
 gi|304445945|pdb|3N6R|K Chain K, Crystal Structure Of The Holoenzyme Of Propionyl-Coa
           Carboxylase (Pcc)
 gi|56677735|gb|AAV94401.1| propionyl-CoA carboxylase, alpha subunit [Ruegeria pomeroyi DSS-3]
          Length = 681

 Score = 74.4 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 74/221 (33%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      LE   + +      A     DK+ SK++     V   P  + 
Sbjct: 77  AVHPGYGFLSENSKFAEALEAEGVIFVGPPKGAIEAMGDKITSKKIAQEANVSTVPGYMG 136

Query: 114 NRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGD 164
                D      + I  P +IK   GG   G+ +   DQ             ++S+   D
Sbjct: 137 LIEDADEAVKISNQIGYPVMIKASAGGGGKGMRIAWNDQEAREGFQSSKNEAANSFG-DD 195

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           ++ IE++V     +   V+ D+  +   +   +        K             +    
Sbjct: 196 RIFIEKFVTQPRHIEIQVLCDSHGNGIYLGERECSIQRRNQK----VVEEAPSPFLDEAT 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +   A    +A+G       +F+ D      ++LE+N 
Sbjct: 252 RRAMGEQAVALAKAVGYASAGTVEFIVDGQKN-FYFLEMNT 291


>gi|307708818|ref|ZP_07645280.1| carbamoyl-phosphate synthase, large subunit [Streptococcus mitis
           NCTC 12261]
 gi|307615184|gb|EFN94395.1| carbamoyl-phosphate synthase, large subunit [Streptococcus mitis
           NCTC 12261]
          Length = 1058

 Score = 74.4 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 26/228 (11%), Positives = 77/228 (33%), Gaps = 19/228 (8%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYV 129
           L    +    + +     + D+   +Q +    +P  P            +   I  P +
Sbjct: 646 LAKAGVTILGTQVADLDRAEDRDLFEQALKDLDIPQPPGQTATNEEEAVLAARKIGFPVL 705

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS--- 186
           ++P        + +++ ++ +   +  +   +    +L++ Y+ G E     + D     
Sbjct: 706 VRPSYVLGGRAMEIVENEEDLRSYMRTAVKASPDHPVLVDSYIVGQECEVDAISDGQNVL 765

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISR 245
           +      + ++  +S        +S  V P + +   + + +          + C G+  
Sbjct: 766 IPGIMEHIERAGVHS-------GDSMAVYPPQTLSQKVQETIADYTKRLAIGLNCLGMMN 818

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
             F+      KV+ +E+N +   T     P ++        ++   ++
Sbjct: 819 IQFVI--KDEKVYVIEVNPRASRT----VPFLSKVTNIPMAQVATKLI 860



 Score = 70.5 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 54/302 (17%), Positives = 115/302 (38%), Gaps = 37/302 (12%)

Query: 20  KACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNVL 58
           +AC S L++ G++V  ++        D+ +                +L   +PD     L
Sbjct: 32  QACLS-LKEEGYEVVLVNSNPATIMTDKEIADKVYIEPITLEFVTRILRKERPDALLPTL 90

Query: 59  HGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
            G  G +  ++     IL+ L +    + + A   + D+   KQ++     P+  S +VN
Sbjct: 91  GGQTGLNMAMELSKNGILDELGVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIVN 150

Query: 115 --RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                +     I  P +++P       G  +   ++ +          +   Q LIE+ +
Sbjct: 151 TVEEAVAFAATIGYPVIVRPAFTLGGTGGGMCANEEELREIAENGLKLSPVTQCLIERSI 210

Query: 173 DG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRL 230
            G  E+   VM D++ +   + V   + +   +   + +S    PA+ +     + ++  
Sbjct: 211 AGFKEIEYEVMRDSADNA--LVVCNMENFD-PVGIHTGDSIVFAPAQTMSDYENQMLRDA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    +A+   G        DP S K + +E+N  P ++  S     +   GY   +L  
Sbjct: 268 SLSIIRALKIEGGCNVQLALDPHSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325


>gi|291286012|ref|YP_003502828.1| acetyl-CoA carboxylase, biotin carboxylase [Denitrovibrio
           acetiphilus DSM 12809]
 gi|290883172|gb|ADD66872.1| acetyl-CoA carboxylase, biotin carboxylase [Denitrovibrio
           acetiphilus DSM 12809]
          Length = 445

 Score = 74.4 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 31/215 (14%), Positives = 74/215 (34%), Gaps = 14/215 (6%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVN 114
           +G   E+    AI E     +         +  +K  +K+ +   GVPV P     +   
Sbjct: 82  YGFLAENAEFAAICEDCGFKFIGPSAEHINMMGNKSSAKEAMKKFGVPVVPGSEGAVKDA 141

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD----QSIPLDLLQSSSWNHGDQLLIEQ 170
           +        +  P +IK   GG   G+ V   +     +  +   ++ +    D++ +E+
Sbjct: 142 KEARAIAEAMGYPVMIKASAGGGGKGMRVAHNELSFMNAFEMARSEAMNAFGSDEIYVEK 201

Query: 171 YVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           +++    +   V GD           +        K             I     +++ +
Sbjct: 202 FIENPRHVEVQVFGDGKGKGLHFYERECSIQRRHQKLL----EEAPSTAISQKTREKMGK 257

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           ++  A +++        ++L D      +++E+N 
Sbjct: 258 ISVDAVESLKYENAGTIEYLVDKDEN-FYFMEMNT 291


>gi|46143750|ref|ZP_00134474.2| COG0439: Biotin carboxylase [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|126209327|ref|YP_001054552.1| acetyl-CoA carboxylase biotin carboxylase subunit [Actinobacillus
           pleuropneumoniae L20]
 gi|126098119|gb|ABN74947.1| Biotin carboxylase [Actinobacillus pleuropneumoniae serovar 5b str.
           L20]
          Length = 447

 Score = 74.4 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 80/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         L  DK+ +   +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAEQVENSGFTFIGPTADVIRLMGDKVSAINAMKKAGVPCVPGSDG 136

Query: 112 ---LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
                     +    I  P +IK   GG   G+ V+  ++ +   +     ++ +  + D
Sbjct: 137 PVGNDPAKNKEIAKRIGYPVIIKASGGGGGRGMRVVYNEKDLEESIAMTKAEAKAAFNND 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+Y++    +   V+ D   +   +A           K          PA  I  +
Sbjct: 197 MVYMEKYLENPRHIEIQVLADTHGNAVYLAERDCSMQRRHQK-----VVEEAPAPGITPE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + K +      A + IG RG    +FLF   + + +++E+N 
Sbjct: 252 LRKFIGERCANACREIGYRGAGTFEFLF--ENGEFYFIEMNT 291


>gi|323344538|ref|ZP_08084763.1| phosphoribosylglycinamide formyltransferase 2 [Prevotella oralis
           ATCC 33269]
 gi|323094665|gb|EFZ37241.1| phosphoribosylglycinamide formyltransferase 2 [Prevotella oralis
           ATCC 33269]
          Length = 403

 Score = 74.4 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 46/267 (17%), Positives = 87/267 (32%), Gaps = 43/267 (16%)

Query: 42  VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD-----KMRS 96
           +   +   +PD+    +     E         L +       ++ SA +++     K   
Sbjct: 73  LDAAVRKHRPDIIVPEIEAIRTE--------RLFDFERQGIQVVPSARAVNFTMNRKAIR 124

Query: 97  KQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154
                  G+          F     +   I  P V+KPL   S  G  +++ +  +    
Sbjct: 125 DLAAKELGLRTAKYFYARTFDEFKSAALKIGFPCVVKPLMSSSGHGQSIVRAEDELHKAF 184

Query: 155 LQSSSWNHGD--QLLIEQYVDGIE----LTCGVMGDASLDVTEIA-VPKSDFYSYELKYS 207
             +   + GD  +L+IE+++        LT   M   +L    I  V K   Y       
Sbjct: 185 DNAMQGSRGDVKELIIEEFIRFKSEFTLLTVTQMNGPTLFCPPIGHVQKGGDY------- 237

Query: 208 SLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP- 266
                   P +I     +  + +A+   +A+   GI   +F       +V + E++ +P 
Sbjct: 238 ---RESWQPYRIDSTALRHAEDMAYKVTRALTGAGIWGVEFFLTE-ENEVIFSELSPRPH 293

Query: 267 --GM------TPVSIFPEMAAY-AGYS 284
             GM      T +S F        G  
Sbjct: 294 DTGMVTLAHTTNLSEFELHFRAVMGLP 320


>gi|320102161|ref|YP_004177752.1| pyruvate carboxylase [Isosphaera pallida ATCC 43644]
 gi|319749443|gb|ADV61203.1| pyruvate carboxylase [Isosphaera pallida ATCC 43644]
          Length = 1157

 Score = 74.4 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 31/221 (14%), Positives = 76/221 (34%), Gaps = 18/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV----CP 109
            +H  +G   E+           I +            DK+ ++++    GVPV      
Sbjct: 89  AIHPGYGFLSENAQFARACREAGIRFVGPTAEVLEALGDKVSARRIAQEAGVPVLGGAGR 148

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGDQ 165
            +       +    +  P ++K   GG   G+ V++    +         ++ S     +
Sbjct: 149 PVTPGVDAHELAKQLGYPVIVKASMGGGGRGMRVVETPDQLDHAIESAAREAGSAFGNPE 208

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDI 223
           + +E+Y+     +   ++GD         +         ++        + PA  +  D+
Sbjct: 209 VFLERYIQRARHIEVQLLGD-----CHGTLVHLHERDCSVQRRHQKIIEMAPALGLTPDL 263

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +++ + A      +G       +FL D  +   +++E+N 
Sbjct: 264 RRQIHQAALAIGHKVGYTNAGTVEFLLDVDTNTFYFIEVNP 304


>gi|307277918|ref|ZP_07559002.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecalis
           TX0860]
 gi|306505315|gb|EFM74501.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecalis
           TX0860]
          Length = 1066

 Score = 74.4 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 50/296 (16%), Positives = 108/296 (36%), Gaps = 34/296 (11%)

Query: 25  ALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNVLHGNFG 63
           AL++ G++V  ++        D+ +                +L   +PD     L G  G
Sbjct: 42  ALKEEGYEVVLVNSNPATIMTDKEIADHVYIEPITLEFVSRILRKERPDALLPTLGGQTG 101

Query: 64  EDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFT 117
            +  ++     IL+ L +    + + A   + D+   KQ++     P+  S +VN     
Sbjct: 102 LNMAMELSGSGILDELNVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIVNTVEQA 161

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IE 176
           +     I  P +++P       G  +   ++ +          +   Q LIE+ + G  E
Sbjct: 162 VAFAKQIGYPIIVRPAFTLGGTGGGMCDTEEELRQIAENGLKLSPVTQCLIEKSIAGFKE 221

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +   VM D++ +   I V   + +     ++  +        +    Y+ ++  +    +
Sbjct: 222 IEYEVMRDSADNA--IVVCNMENFDPVGIHTGDSIVFAPSQTLSDYEYQMLRDASLKIIR 279

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           A+   G        DP S   + +E+N  P ++  S     +   GY   +L   +
Sbjct: 280 ALKIEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAKI 331



 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/221 (11%), Positives = 71/221 (32%), Gaps = 13/221 (5%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--QHLISPPYVIKPL 133
            +    + I     + ++   +Q +    +P  P                I  P +++P 
Sbjct: 656 GVKILGTTIEDLDRAENRDLFEQALQELAIPQPPGDTATSAEEAVVIADRIGYPVLVRPS 715

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
                  + +++  + +   +  +   +    +L++ Y+ G E     + D    +    
Sbjct: 716 YVLGGRAMEIVENQKDLEDYMRHAVKASPEHPVLVDSYLLGQECEVDAICDGETVLIPGI 775

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
           +   +           +S  V P + +  +I   +          + C G+    F+   
Sbjct: 776 MEHIERAGVHS----GDSMAVYPPQYLSQEIQATIADYTKKLALGLNCVGMMNIQFVIHE 831

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
              +V+ +E+N +   T     P ++   G    ++    +
Sbjct: 832 --NRVYVIEVNPRASRT----VPFLSKITGIPMAQVATKAI 866


>gi|302391678|ref|YP_003827498.1| carbamoyl-phosphate synthase large subunit [Acetohalobium
           arabaticum DSM 5501]
 gi|302203755|gb|ADL12433.1| carbamoyl-phosphate synthase large subunit [Acetohalobium
           arabaticum DSM 5501]
          Length = 1070

 Score = 74.4 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 54/287 (18%), Positives = 108/287 (37%), Gaps = 35/287 (12%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQID---------------------VDRSVGLV 45
           G ++E + S   G     AL+D G +V  ++                         V  +
Sbjct: 21  GQAAEFDYS---GSQACRALKDEGVEVILVNSNPATIMTDQNIADRVYIEPLTAEVVAKI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   KPD     L G  G +   +     +LE L+I    + +     + D+ +  Q++ 
Sbjct: 78  IKQEKPDGLLPTLGGQTGLNIASELARKGLLEELDIEMLGTPLDTIEKAEDRDKFIQMLH 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
               PV  S + +      +    I  P +I+P       G  V    + +     +   
Sbjct: 138 EIDEPVLESKIADSIEEAKEIAEGIGYPVIIRPAYTMGGTGGGVADNPEELEEVASRGLK 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +  D++LIE+ + G  E+   VM D + +   I V   + +   +   + +S  V P++
Sbjct: 198 HSLIDEVLIEKSIKGWKEVEYEVMRDGANN--CITVCNMENFD-PVGIHTGDSIVVAPSQ 254

Query: 219 -IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +    Y+ ++  +    + +G  G     F  DP S + + +E+N 
Sbjct: 255 TLSDKEYQMLRSSSLKIIRELGIEGGCNVQFALDPDSFQYYIIEVNP 301



 Score = 71.3 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/212 (13%), Positives = 79/212 (37%), Gaps = 20/212 (9%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--FTMDSQHLISPPYVIKPL 133
            +    + + A  ++ D+ +   ++    +P      V        +   I  P V++P 
Sbjct: 651 GVEILGTSVEAIDIAEDRDKFMNLLDELDIPTPTGSTVYSVPEAKKTATEIGYPVVVRPS 710

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS---LDVT 190
                  + V+ K++ +   +   +  +    LL+++Y+ G E+    + D     +   
Sbjct: 711 YVLGGRAMEVVYKEEELMQYMETEAKVSEEHPLLVDKYITGKEIEIDAISDGEDVLIPGI 770

Query: 191 EIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
              + ++  +S        +S  V P + +  D  +++        +A+  +G+    ++
Sbjct: 771 MEHIERAGVHS-------GDSIAVYPEQTLSEDEREQLIDYTVKLGRALNVKGLINIQYV 823

Query: 250 FDPLSRKVFWLEIN-----VQPGMTPVSIFPE 276
                  V+ +E+N       P ++ V+  P 
Sbjct: 824 V--ADGTVYVIEVNPRSSRTIPYLSKVTGVPM 853


>gi|291541479|emb|CBL14589.1| carbamoyl-phosphate synthase large subunit [Ruminococcus bromii
           L2-63]
          Length = 1350

 Score = 74.4 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 47/286 (16%), Positives = 102/286 (35%), Gaps = 33/286 (11%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQIDVD---------------------RSVGLV 45
           G ++E + +   G     AL++ G +V  ++ +                      +V  +
Sbjct: 21  GQAAEFDYA---GTQACRALKEEGLEVILVNSNPATIMTDNAMADKIYIEPLTLETVKRI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   +PD   + L G  G    +Q      L+   +    +       + D+   K  + 
Sbjct: 78  IKKERPDSLLSTLGGQTGLTLSMQLAKEGFLDKYNVQLLGANPETIDKAEDRQLFKDTMI 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G PV PS++V      +     I  P +I+P       G  ++  ++ +         
Sbjct: 138 EIGQPVIPSLVVTDVESAVKFADEIGYPVIIRPAFTLGGTGGGIVDNEEELREITSNGLE 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   Q+L+E+ + G  E+   VM D+  +V  I V   + +     ++  +        
Sbjct: 198 LSPITQVLVEKCISGWKEIEFEVMRDSDGNV--ITVCSMENFDPVGVHTGDSIVIAPTVT 255

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +    Y+ ++  A     A+   G     F  +P + +   +E+N 
Sbjct: 256 LADKEYQMLRSAALNIISALKVEGGCNCQFALNPETFEYAVIEVNP 301



 Score = 61.7 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 45/289 (15%), Positives = 101/289 (34%), Gaps = 32/289 (11%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLA---------FNVLHGNFGEDG 66
           AL+ AG+ V  +         D D +  L    L  +           F V+    G+  
Sbjct: 578 ALKKAGYDVVIVNNNPETVSTDFDTADRLYFEPLTTEDVMGIIKTENPFGVVVAFGGQTA 637

Query: 67  -LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTMDSQHL 123
             +   L    +    +   A  ++ D+ R  +++    +     + V      +D    
Sbjct: 638 IKLTKFLSDNGVNILGTSYDAIDMAEDRERFDELLEKYHIKRPRGVTVMTTDEALDVADK 697

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        +I+   +  +   +    + N  + +LI++Y+ G EL    + 
Sbjct: 698 IGYPVLLRPSYVLGGQNMIIAFNEDDVKEYMAIILAQNIENPILIDKYLQGTELEVDAIC 757

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRG 242
           D      +I +P    +       S +S  V PA  +   + + +   +      +  +G
Sbjct: 758 DGE----DILIPGIMEHIERAGVHSGDSIAVYPAWNLSDRMTQIIIESSKNLAIELRTKG 813

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    +L      +++ +E+N +   T     P ++   G    +L   
Sbjct: 814 LVNIQYLIYK--DELYVIEVNPRSSRT----IPYISKVTGVPMVDLATR 856


>gi|317497123|ref|ZP_07955449.1| acetyl-CoA carboxylase [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316895533|gb|EFV17689.1| acetyl-CoA carboxylase [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 455

 Score = 74.4 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 71/220 (32%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  FG   E+     + E   I +            +K  +++ +   GVPV P    
Sbjct: 77  AIHPGFGFLSENSKFVRMCEKCNITFIGPSAEIIDRMGNKSAARKTMMDAGVPVVPGTKD 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS----IPLDLLQSSSWNHGDQ 165
            +            +  P +IK   GG   G+ V    +          L++ +      
Sbjct: 137 AVYEAEAGQKIADDMGYPVMIKASAGGGGKGMRVCYDSEDFVHTFETAKLEAENAFGDGT 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+Y+ D   +   ++ D   +   +            K             I  +  
Sbjct: 197 MYIEKYIEDPRHIEFQILADKYGNTIHLGERDCSIQRRHQK----LIEESPSPAISDEQR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K++  +A  A +A         +FL D      +++E+N 
Sbjct: 253 KKMGEIAVKAAKAAEYYSAGTIEFLRDKH-GDFYFIEMNT 291


>gi|262282329|ref|ZP_06060097.1| carbamoyl-phosphate synthase large subunit [Streptococcus sp.
           2_1_36FAA]
 gi|262261620|gb|EEY80318.1| carbamoyl-phosphate synthase large subunit [Streptococcus sp.
           2_1_36FAA]
          Length = 1059

 Score = 74.4 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 24/224 (10%), Positives = 73/224 (32%), Gaps = 11/224 (4%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYV 129
           L    +    + +     + D+   +Q +    +P  P           ++   I  P +
Sbjct: 646 LSKAGVKILGTQVADLDRAEDRDLFEQALKELDIPQPPGQTATNEEEAVEAARKIGFPVL 705

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           ++P        + +++ +  +   +  +   +    +L++ Y+ G E     + D  L +
Sbjct: 706 VRPSYVLGGRAMEIVENEADLRSYMRTAVKASPDHPVLVDSYIVGDECEVDAISDGRLVL 765

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
               +   +       +S  +     P  +   +   +          + C G+    F+
Sbjct: 766 IPGIMEHIERAGV---HSGDSMAAYPPQTLSQKVKDTIADYTKRLALGLNCVGMMNIQFV 822

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
                 +V+ +E+N +   T     P ++        ++   ++
Sbjct: 823 I--KDEQVYVIEVNPRASRT----VPFLSKVTDIPMAQVATRLI 860



 Score = 64.4 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 37/206 (17%), Positives = 78/206 (37%), Gaps = 9/206 (4%)

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147
           + D+   KQ++   G P+  S +VN     ++    I  P +++P       G  +   +
Sbjct: 126 AEDRDLFKQLMEELGQPIPESEIVNTVDEALEFADGIGYPVIVRPAFTLGGTGGGICSNE 185

Query: 148 QSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
           + +          +   Q LIE+ + G  E+   VM D + +   + V   + +     +
Sbjct: 186 EELQEIAGNGLKLSPVTQCLIERSIAGFKEIEYEVMRDGADNA--LVVCNMENFDPVGIH 243

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
           +  +        I    Y+ ++  +    +A+   G        DP S K + +E+N  P
Sbjct: 244 TGDSIVFAPSQTISDYEYQMLRDASLKIIRALKIEGGCNVQLALDPHSFKYYVIEVN--P 301

Query: 267 GMTPVSIFPEMAAYAGYSFRELLLWM 292
            ++  S     +   GY   +L   +
Sbjct: 302 RVSRSS--ALASKATGYPIAKLAAKI 325


>gi|256830974|ref|YP_003159702.1| carbamoyl-phosphate synthase, large subunit [Desulfomicrobium
           baculatum DSM 4028]
 gi|256580150|gb|ACU91286.1| carbamoyl-phosphate synthase, large subunit [Desulfomicrobium
           baculatum DSM 4028]
          Length = 1082

 Score = 74.4 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 44/278 (15%), Positives = 101/278 (36%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G++V  +         D +             +V  ++   +P     
Sbjct: 29  SGTQALKALKEEGYEVILVNSNPATIMTDPNLADRTYIEPIEPETVARIIEKERPCALLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G  G +  V      +LE   +    + + +   +  +   ++ + + G+ V  S +
Sbjct: 89  TLGGQTGLNTAVAVAENGVLEKYGVELIGASLPSIKKAESRQLFRKAMENIGLKVPKSGI 148

Query: 113 VNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                   +    +  P +++P       G  V    + +     Q  + +   ++++E+
Sbjct: 149 ARTQDDVREWGEKLKFPIIVRPAYTLGGTGGGVAYNKEDLERIAQQGLAASLTSEVMLEE 208

Query: 171 YVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D   + V   ++   D           +S  V PA+ +  D Y+++
Sbjct: 209 SLLGWKEYELEVVRDKKDNCVIICSIENLDPMGVHT----GDSVTVAPAQTLTDDEYQKM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P +  +  +E+N 
Sbjct: 265 RDASLAIMREIGVETGGSNVQFAHNPANGDMMIIEMNP 302



 Score = 46.3 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 30/221 (13%), Positives = 77/221 (34%), Gaps = 14/221 (6%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPL 133
            +P   +   +   + D+ R + ++    +    +         +     I  P V++P 
Sbjct: 662 GVPILGTSPDSIDRAEDRERFQALLKKLDLLQPNNGTSMSIEEAVIVAARIGYPVVVRPS 721

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEI 192
                  + ++  ++ +     +  +      +LI+++++  IE+    + D        
Sbjct: 722 YVLGGRAMDIVYDEKDLRTYFEKHVTVVPDHPILIDKFLENAIEIDVDAVSDGEDTYVAG 781

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
            +   +    E    S +S  VLP   +     +E++R        +G  G+    F   
Sbjct: 782 IMEHIE----EAGIHSGDSACVLPPHTLGKMWVQEIERQTKALASELGVVGLMNIQFAL- 836

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
               +++ LE+N +   T     P ++   G    +L   +
Sbjct: 837 -KDEQIYILEVNPRASRTS----PFVSKATGVPLAKLATRV 872


>gi|322391454|ref|ZP_08064923.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus peroris
           ATCC 700780]
 gi|321145537|gb|EFX40929.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus peroris
           ATCC 700780]
          Length = 455

 Score = 74.4 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 74/220 (33%), Gaps = 16/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  FG   E+     + E + I +         +  DK+ ++  +    VPV P    
Sbjct: 77  AIHPGFGFLSENSKFATMCEEVGIKFIGPSARVMDVMGDKINARAQMIKANVPVIPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
            +      +     I  P ++K   GG   GI  ++K + +      +SS          
Sbjct: 137 EVHTAEEALAIAEKIGYPVMLKASAGGGGKGIRKVEKAEDLVSAFETASSEAKANFGNGA 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+ +     +   ++ D    V  +            K             I   + 
Sbjct: 197 MYLERVIYPARHIEVQILADQMGHVIHLGERDCSLQRNNQKVL----EESPSIAIGKTLR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            E+   A  A +++        +FL D  + K +++E+N 
Sbjct: 253 HEIGSAAVRAAESVHYENAGTIEFLLDEATGKFYFMEMNT 292


>gi|303247248|ref|ZP_07333522.1| carbamoyl-phosphate synthase, large subunit [Desulfovibrio
           fructosovorans JJ]
 gi|302491407|gb|EFL51295.1| carbamoyl-phosphate synthase, large subunit [Desulfovibrio
           fructosovorans JJ]
          Length = 1079

 Score = 74.4 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 47/278 (16%), Positives = 103/278 (37%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG   A AL++ G++V  +         D               SV  ++A  KPD    
Sbjct: 29  SGSQAAKALKEEGYEVVLVNSNPATIMTDPGLADRTYVEPIEPASVARIIAREKPDAVLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G  G +  V      +L    +    + +     +  +   ++ + + G+ +  S +
Sbjct: 89  TLGGQTGLNTAVALAESGVLAEHGVELIGASLDVIKKAESRELFREAMENIGLTIPQSGI 148

Query: 113 VNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +      +    I+ P +++P       G  V    + +     +  + +   ++++E+
Sbjct: 149 CHTMDDVREWGKKIAFPIIVRPAFTLGGTGGGVAYNMEDLEKISARGLAASMKSEIMLER 208

Query: 171 YVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            V G  E    +M D + + V   ++   D           +S  V P + +  + Y+++
Sbjct: 209 SVLGWKEFELELMRDRADNCVIICSIENIDPMGVHT----GDSATVAPIQTLTDEEYQKM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  A    + IG   G S   F  +P   ++  +E+N 
Sbjct: 265 RNAAIAIMREIGVETGGSNVQFAVNPADGEMVIIEMNP 302



 Score = 60.1 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 47/293 (16%), Positives = 101/293 (34%), Gaps = 35/293 (11%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ------ 69
           AL   G +   +         D D S  L    L  +   N++     E  +VQ      
Sbjct: 592 ALRAMGVESIMVNSNPETVSTDYDTSDRLYFEPLTFEDVLNIIESEKPEGVIVQFGGQTP 651

Query: 70  -----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---SILVNRFTMDSQ 121
                 +L+   +    +   +   + D+ R ++++   G+       +  V+     + 
Sbjct: 652 LNLAVPLLD-AGVRILGTSPDSIDRAEDRERFQELLIKLGLRQPANGTAFTVDEAAAIAD 710

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
             I  P V++P        + ++     +      +   +    +LI++++        V
Sbjct: 711 K-IGYPVVVRPSYVLGGRAMEIVYDRGDLENYFKVAVVASGKHPILIDKFLVNATE---V 766

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGC 240
             DA  D T+  V     +  E    S +S  VLP   +  ++  E++R      + +G 
Sbjct: 767 DVDAVSDGTDTYVAGVMEHIEEAGIHSGDSACVLPPHSLSPELVAEIERQTVALAKELGV 826

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            G+    F        ++ LE+N +   T     P ++   G    +L   ++
Sbjct: 827 IGLMNIQFAV--KDGDIYILEVNPRASRTS----PFVSKATGVPLPKLATQVI 873


>gi|299133767|ref|ZP_07026961.1| acetyl-CoA carboxylase, biotin carboxylase [Afipia sp. 1NLS2]
 gi|298591603|gb|EFI51804.1| acetyl-CoA carboxylase, biotin carboxylase [Afipia sp. 1NLS2]
          Length = 451

 Score = 74.4 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 74/220 (33%), Gaps = 18/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---- 109
            +H  +G   E+     IL   ++ +            DK+ +K+     G+PV P    
Sbjct: 77  AVHPGYGFLSENARFAEILAEHDLDFIGPKAEHIRTMGDKIEAKKTAKRLGIPVVPGSDG 136

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
            +      M     I  P ++K   GG   G+ V + +  + L L     ++ +      
Sbjct: 137 GVSPGDDAMAIAKKIGFPVLVKAAAGGGGRGMKVAQTEADLMLALSTASNEAKAAFGDGS 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+Y+     +   ++GD       +            K             I     
Sbjct: 197 VYLEKYLGKPRHIEIQILGDGRGGAIHLGERDCSLQRRHQK----VWEESPSPIISPAAR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +  +   A + +   G+   +FL+     + +++E+N 
Sbjct: 253 HRIGEICANAMREMKYLGVGTIEFLY--EDGEFYFIEMNT 290


>gi|257416236|ref|ZP_05593230.1| carbamoyl-phosphate synthase [Enterococcus faecalis AR01/DG]
 gi|257158064|gb|EEU88024.1| carbamoyl-phosphate synthase [Enterococcus faecalis ARO1/DG]
          Length = 1060

 Score = 74.4 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 50/296 (16%), Positives = 108/296 (36%), Gaps = 34/296 (11%)

Query: 25  ALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNVLHGNFG 63
           AL++ G++V  ++        D+ +                +L   +PD     L G  G
Sbjct: 36  ALKEEGYEVVLVNSNPATIMTDKEIADHVYIEPITLEFVSRILRKERPDALLPTLGGQTG 95

Query: 64  EDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFT 117
            +  ++     IL+ L +    + + A   + D+   KQ++     P+  S +VN     
Sbjct: 96  LNMAMELSESGILDELNVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIVNTVEQA 155

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IE 176
           +     I  P +++P       G  +   ++ +          +   Q LIE+ + G  E
Sbjct: 156 VAFAKQIGYPIIVRPAFTLGGTGGGMCDTEEELRQIAENGLKLSPVTQCLIEKSIAGFKE 215

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +   VM D++ +   I V   + +     ++  +        +    Y+ ++  +    +
Sbjct: 216 IEYEVMRDSADNA--IVVCNMENFDPVGIHTGDSIVFAPSQTLSDYEYQMLRDASLKIIR 273

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           A+   G        DP S   + +E+N  P ++  S     +   GY   +L   +
Sbjct: 274 ALKIEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAKI 325



 Score = 69.0 bits (168), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 26/221 (11%), Positives = 72/221 (32%), Gaps = 13/221 (5%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--QHLISPPYVIKPL 133
            +    + I     + ++   +Q +    +P  P                I  P +++P 
Sbjct: 650 GVKILGTTIEDLDRAENRDLFEQALQELAIPQPPGDTATSAEEAVVIADRIGYPVLVRPS 709

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
                  + +++  + +   + Q+   +    +L++ Y+ G E     + D    +    
Sbjct: 710 YVLGGRAMEIVENQKDLEDYMRQAVKASPEHPVLVDSYLLGQECEVDAICDGETVLIPGI 769

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
           +   +           +S  V P + +  +I   +          + C G+    F+   
Sbjct: 770 MEHIERAGVHS----GDSMAVYPPQYLSQEIQATIADYTKKLALGLNCVGMMNIQFVIHE 825

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
              +V+ +E+N +   T     P ++   G    ++    +
Sbjct: 826 --NRVYVIEVNPRASRT----VPFLSKITGIPMAQVATKAI 860


>gi|257090030|ref|ZP_05584391.1| carbamoyl-phosphate synthase [Enterococcus faecalis CH188]
 gi|256998842|gb|EEU85362.1| carbamoyl-phosphate synthase [Enterococcus faecalis CH188]
          Length = 1060

 Score = 74.4 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 50/296 (16%), Positives = 108/296 (36%), Gaps = 34/296 (11%)

Query: 25  ALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNVLHGNFG 63
           AL++ G++V  ++        D+ +                +L   +PD     L G  G
Sbjct: 36  ALKEEGYEVVLVNSNPATIMTDKEIADHVYIEPITLEFVSRILRKERPDALLPTLGGQTG 95

Query: 64  EDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFT 117
            +  ++     IL+ L +    + + A   + D+   KQ++     P+  S +VN     
Sbjct: 96  LNMAMELSESGILDELNVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIVNTVEQA 155

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IE 176
           +     I  P +++P       G  +   ++ +          +   Q LIE+ + G  E
Sbjct: 156 VAFAKRIGYPIIVRPAFTLGGTGGGMCDTEEELRQIAENGLKLSPVTQCLIEKSIAGFKE 215

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +   VM D++ +   I V   + +     ++  +        +    Y+ ++  +    +
Sbjct: 216 IEYEVMRDSADNA--IVVCNMENFDPVGIHTGDSIVFAPSQTLSDYEYQMLRDASLKIIR 273

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           A+   G        DP S   + +E+N  P ++  S     +   GY   +L   +
Sbjct: 274 ALKIEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAKI 325



 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/221 (11%), Positives = 71/221 (32%), Gaps = 13/221 (5%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--QHLISPPYVIKPL 133
            +    + I     + ++   +Q +    +P  P                I  P +++P 
Sbjct: 650 GVKILGTTIEDLDRAENRDLFEQALQELAIPQPPGDTATSAEEAVVIADRIGYPVLVRPS 709

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
                  + +++  + +   +  +   +    +L++ Y+ G E     + D    +    
Sbjct: 710 YVLGGRAMEIVENQKDLEDYMRHAVKASPEHPVLVDSYLLGQECEVDAICDGETVLIPGI 769

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
           +   +           +S  V P + +  +I   +          + C G+    F+   
Sbjct: 770 MEHIERAGVHS----GDSMAVYPPQYLSQEIQATIADYTKKLALGLNCVGMMNIQFVIHE 825

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
              +V+ +E+N +   T     P ++   G    ++    +
Sbjct: 826 --NRVYVIEVNPRASRT----VPFLSKITGIPMAQVATKAI 860


>gi|929988|gb|AAA96256.1| pyruvate carboxylase [Rattus norvegicus]
          Length = 1178

 Score = 74.4 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 31/233 (13%), Positives = 75/233 (32%), Gaps = 17/233 (7%)

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
            +  V      D      +G   E        +   + +            DK+ ++ + 
Sbjct: 101 DIIKVAKENGVDAVHPG-YGFLSERADFAQACQDAGVRFIGPSPEVVRKMGDKVEARAIA 159

Query: 101 SSCGVPVCPSILVNRFTMDSQHLI----SPPYVIKPLKGGSSLGIIVIKKDQSIPL---- 152
            + GVPV P       ++   H        P + K   GG   G+ V+   + +      
Sbjct: 160 IAAGVPVVPGTNSPINSLHEAHEFSNTYGFPIIFKAAYGGGGRGMRVVHSYEELEENYTR 219

Query: 153 DLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
              ++ +      L +E++++    +   ++GD   ++  +            K      
Sbjct: 220 AYPEALAAFGNGALFVEKFIEKPRHIEVQILGDQYGNILHLYERDCSIQRRHQK-----V 274

Query: 212 THVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
             + PA  +   +   +   +    + +G       +FL D   +  +++E+N
Sbjct: 275 VEIAPATHLDPQLRSRLTSDSVKLAKQVGYENAGTVEFLVDKHGKH-YFIEVN 326


>gi|114048815|ref|YP_739365.1| carbamoyl-phosphate synthase L chain, ATP-binding protein [Shewanella
            sp. MR-7]
 gi|113890257|gb|ABI44308.1| Carbamoyl-phosphate synthase L chain, ATP-binding protein [Shewanella
            sp. MR-7]
          Length = 1517

 Score = 74.4 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 86/221 (38%), Gaps = 18/221 (8%)

Query: 57   VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
             LH   G   E     A+     + +    + +     +K  + +   S  VPV P    
Sbjct: 1018 ALHPGIGFLSESPQFAALCVNNGVNFVGPSVHSMTTMGNKSNAIKTSQSQNVPVVPGSHG 1077

Query: 111  -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI-----PLDLLQSSSWNHGD 164
             +      ++  + I  P ++K ++GG   GI V+K+ + +           ++++ +GD
Sbjct: 1078 ILTNAEQAVNVANEIGYPVLLKAVQGGGGKGIQVVKRPEDMIGLFQKTSTEAAAAFGNGD 1137

Query: 165  QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
              L E+YV     +   ++ D   +   + +          K    + + +    +P ++
Sbjct: 1138 LYL-EKYVTSLRHIEVQLLRDKFGNAKVLGLRDCSVQRNNQKVVEESGSTM----LPEEL 1192

Query: 224  YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             K+V         A    G    +F+++  + +V+++E+N 
Sbjct: 1193 KKQVLDYTRALGDATDYMGAGTVEFIYNLDANEVYFMEMNT 1233


>gi|319939245|ref|ZP_08013608.1| carbamoyl phosphate synthetase [Streptococcus anginosus 1_2_62CV]
 gi|319811641|gb|EFW07917.1| carbamoyl phosphate synthetase [Streptococcus anginosus 1_2_62CV]
          Length = 1059

 Score = 74.4 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 53/301 (17%), Positives = 110/301 (36%), Gaps = 35/301 (11%)

Query: 20  KACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNVL 58
           +AC S L++ G+ V  ++        D+ +                +L   +PD     L
Sbjct: 32  QACLS-LKEEGYTVVLVNSNPATIMTDKEIADKVYIEPITLEFVTRILRKERPDALLPTL 90

Query: 59  HGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
            G  G +  ++     IL+ L +    + + A   + D+   KQ++     P+  S +VN
Sbjct: 91  GGQTGLNMAMELSKEGILDELGVELLGTKLSAIDQAEDRDLFKQLMEELKQPIPESEIVN 150

Query: 115 --RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                +D    I  P +++P       G  +   ++ +          +   Q LIE+ +
Sbjct: 151 TVEEAVDFAAKIGYPVIVRPAFTLGGTGGGMCANEEELREIAENGLKLSPVTQCLIERSI 210

Query: 173 DG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
            G  E+   VM DA+ +   + V   + +     ++  +        I     + ++  +
Sbjct: 211 AGFKEIEYEVMRDAADNA--LVVCNMENFDPVGVHTGDSIVFAPTQTISDYENQMLRDAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S   + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LKIIRALKIEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 71.7 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 25/225 (11%), Positives = 74/225 (32%), Gaps = 13/225 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYV 129
           L    +    + +     + D+   +Q +    +P  P            +   I  P +
Sbjct: 646 LSKAGVKILGTQVADLDRAEDRDLFEQALKDLNIPQPPGQTATNEEEAVAAARKIGFPVL 705

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           ++P        + +++ +  +   +  +   +    +L++ Y+ G E     + D    +
Sbjct: 706 VRPSYVLGGRAMEIVENEVDLRSYMRTAVKASPDHPVLVDSYIVGKECEVDAISDGRQVL 765

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               +   +           +S  V P + + + + + +          + C G+    F
Sbjct: 766 IPGIMEHIERAGVHS----GDSMAVYPPQTLSVQVQQTIADYTKKLAIGLHCIGMMNIQF 821

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +      KV+ +E+N +   T     P ++        ++   ++
Sbjct: 822 VI--KDEKVYVIEVNPRASRT----VPFLSKVTNIPMAQVATQLI 860


>gi|317402640|gb|EFV83199.1| hypothetical protein HMPREF0005_02226 [Achromobacter xylosoxidans
           C54]
          Length = 448

 Score = 74.4 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 35/222 (15%), Positives = 82/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         L  DK+ +K+ +   GVPV P    
Sbjct: 77  AIHPGYGFLSENADFADRVEKSGFVFIGPRPDTIRLMGDKVSAKRAMIEAGVPVVPGSEG 136

Query: 112 LVNRFTMD---SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
            +     +       +  P +IK   GG   G+ V+  + ++   +     ++ +  +  
Sbjct: 137 ALPDDPQEIIRVAREVGYPVIIKAAGGGGGRGMRVVYTEAALLNAVTMTRSEAGAAFNNP 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
           ++ +E++++    +   V+ D   +   +            K          PA  I   
Sbjct: 197 EVYMEKFLENPRHVEIQVLADGGRNAVWLGERDCSMQRRHQK-----VIEEAPAPGIARR 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + + +      A + +G RG    +FL+   + + +++E+N 
Sbjct: 252 LIERIGDRCADACRKMGYRGAGTFEFLY--ENGEFYFIEMNT 291


>gi|319790533|ref|YP_004152166.1| carbamoyl-phosphate synthase, large subunit [Thermovibrio
           ammonificans HB-1]
 gi|317115035|gb|ADU97525.1| carbamoyl-phosphate synthase, large subunit [Thermovibrio
           ammonificans HB-1]
          Length = 1073

 Score = 74.4 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 54/289 (18%), Positives = 103/289 (35%), Gaps = 38/289 (13%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI---------DVD------------RSVGLV 45
           G ++E + S   G     AL++ G++V  +         D D              +  +
Sbjct: 21  GQAAEFDYS---GTQACKALKEEGYQVVLVNSNPATIMTDPDIADRTYIEPLTVEVLEKI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   +PD     + G    +  V      ILE   +    + + A   + D+   K+ + 
Sbjct: 78  IEKERPDALLPTVGGQTALNLAVKLHEAGILEKYGVELIGAKVEAIKKAEDRELFKEAML 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G+ V  S   +     ++    +  P +I+P       G  V    +       +  +
Sbjct: 138 KIGLEVPKSGTAHTLEEALEVVKEVGLPAIIRPAFTLGGEGGGVAYNIEEFKEIAKKGLA 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGD-ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
            +   ++LIE+ V G  E    VM D     V   ++   D           +S  V PA
Sbjct: 198 ASPVSEILIEESVLGWKEYELEVMRDLNDNVVIICSIENVDPMGVHT----GDSITVAPA 253

Query: 218 K-IPLDIYKEVQRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           + +    Y+ ++  A    + IG   G S   F  +P + +V  +E+N 
Sbjct: 254 QTLTDKEYQVLRDAAIAIIREIGVETGGSNVQFAVNPENGRVIVIEMNP 302



 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 44/287 (15%), Positives = 105/287 (36%), Gaps = 33/287 (11%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ------ 69
           AL + G++   +         D D S  L    L  + A NV+        +VQ      
Sbjct: 584 ALRELGYEAHMVNCNPETVSTDYDTSDKLFFEPLTLEDALNVVEKEKPLGVVVQFGGQTP 643

Query: 70  ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--QHL 123
                 LE   +    +   +  ++ D+ R +++++  G+   PS +             
Sbjct: 644 LKLSVPLEREGVKILGTSSESIDIAEDRERFRELLNRLGLKQPPSGIARSLEEAEKIAQE 703

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVM 182
           I  P +++P        + ++   + +   + ++   +    +LI++++ D +E     +
Sbjct: 704 IGFPVLMRPSYVLGGRAMRIVYSMEELRQYMAEAVEVSEEKPVLIDKFLEDAVEFDVDAV 763

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCR 241
            D    V    +   +    E    S +S  VLP   +  DI ++++ +       +  +
Sbjct: 764 ADGEEVVIGGVMEHIE----EAGIHSGDSACVLPTFSVSRDIVEKIKEITRKIALELNVK 819

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           G+    F       +++ +E+N +   T     P ++   G    ++
Sbjct: 820 GLINIQFAV--KDGEIYIIEVNPRASRT----VPFVSKATGIPLAKV 860


>gi|294085341|ref|YP_003552101.1| acetyl CoA carboxylase biotin carboxylase subunit [Candidatus
           Puniceispirillum marinum IMCC1322]
 gi|292664916|gb|ADE40017.1| acetyl CoA carboxylase, biotin carboxylase subunit [Candidatus
           Puniceispirillum marinum IMCC1322]
          Length = 471

 Score = 74.4 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 42/215 (19%), Positives = 80/215 (37%), Gaps = 14/215 (6%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS---ILVN- 114
           +G   E+      +    + +         L  DK  ++Q  +  GVP  P    +L N 
Sbjct: 83  YGFLSENADFADAVTEAGLIFIGPSGDTIRLMGDKAMARQKAAEAGVPTIPGSDGVLDNL 142

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGDQLLIEQ 170
               D    I  P +IK   GG   GI + +  +           ++ +     +L +E+
Sbjct: 143 DEAADMAEAIGFPVMIKAAAGGGGRGIRIAENAEDFVKIAAEATSEAKAAFGDGRLYVEK 202

Query: 171 YV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
            + +   +   ++GD    V           S + +   L       A +  D+   +  
Sbjct: 203 LISNARHVEVQILGDGQRFVHCFE----RECSLQRRRQKLWEEAPCLA-LSDDMRDRLCN 257

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            A    QA+G +G    +FL+D +SR  +++E+N 
Sbjct: 258 SAVKLAQAVGYKGAGTIEFLYDDVSRTYYFIEMNT 292


>gi|315037128|gb|EFT49060.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecalis
           TX0027]
 gi|315169607|gb|EFU13624.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecalis
           TX1342]
          Length = 1066

 Score = 74.4 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 50/296 (16%), Positives = 108/296 (36%), Gaps = 34/296 (11%)

Query: 25  ALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNVLHGNFG 63
           AL++ G++V  ++        D+ +                +L   +PD     L G  G
Sbjct: 42  ALKEEGYEVVLVNSNPATIMTDKEIADHVYIEPITLEFVSRILRKERPDALLPTLGGQTG 101

Query: 64  EDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFT 117
            +  ++     IL+ L +    + + A   + D+   KQ++     P+  S +VN     
Sbjct: 102 LNMAMELSESGILDELNVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIVNTVEQA 161

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IE 176
           +     I  P +++P       G  +   ++ +          +   Q LIE+ + G  E
Sbjct: 162 VAFAKRIGYPIIVRPAFTLGGTGGGMCDTEEELRQIAENGLKLSPVTQCLIEKSIAGFKE 221

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +   VM D++ +   I V   + +     ++  +        +    Y+ ++  +    +
Sbjct: 222 IEYEVMRDSADNA--IVVCNMENFDPVGIHTGDSIVFAPSQTLSDYEYQMLRDASLKIIR 279

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           A+   G        DP S   + +E+N  P ++  S     +   GY   +L   +
Sbjct: 280 ALKIEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAKI 331



 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/221 (11%), Positives = 71/221 (32%), Gaps = 13/221 (5%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--QHLISPPYVIKPL 133
            +    + I     + ++   +Q +    +P  P                I  P +++P 
Sbjct: 656 GVKILGTTIEDLDRAENRDLFEQALQELEIPQPPGDTATSAEEAVVIADRIGYPVLVRPS 715

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
                  + +++  + +   +  +   +    +L++ Y+ G E     + D    +    
Sbjct: 716 YVLGGRAMEIVENQKDLEDYMRHAVKASPEHPVLVDSYLLGQECEVDAICDGETVLIPGI 775

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
           +   +           +S  V P + +  +I   +          + C G+    F+   
Sbjct: 776 MEHIERAGVHS----GDSMAVYPPQYLSQEIQATIADYTKKLALGLNCVGMMNIQFVIHE 831

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
              +V+ +E+N +   T     P ++   G    ++    +
Sbjct: 832 --NRVYVIEVNPRASRT----VPFLSKITGIPMAQVATKAI 866


>gi|315027872|gb|EFT39804.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecalis
           TX2137]
          Length = 1066

 Score = 74.4 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 50/296 (16%), Positives = 108/296 (36%), Gaps = 34/296 (11%)

Query: 25  ALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNVLHGNFG 63
           AL++ G++V  ++        D+ +                +L   +PD     L G  G
Sbjct: 42  ALKEEGYEVVLVNSNPATIMTDKEIADHVYIEPITLEFVSRILRKERPDALLPTLGGQTG 101

Query: 64  EDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFT 117
            +  ++     IL+ L +    + + A   + D+   KQ++     P+  S +VN     
Sbjct: 102 LNMAMELSESGILDELNVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIVNTVEQA 161

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IE 176
           +     I  P +++P       G  +   ++ +          +   Q LIE+ + G  E
Sbjct: 162 VAFAKRIGYPIIVRPAFTLGGTGGGMCDTEEELRQIAENGLKLSPVTQCLIEKSIAGFKE 221

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +   VM D++ +   I V   + +     ++  +        +    Y+ ++  +    +
Sbjct: 222 IEYEVMRDSADNA--IVVCNMENFDPVGIHTGDSIVFAPSQTLSDYEYQMLRDASLKIIR 279

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           A+   G        DP S   + +E+N  P ++  S     +   GY   +L   +
Sbjct: 280 ALKIEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAKI 331



 Score = 68.2 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 25/221 (11%), Positives = 71/221 (32%), Gaps = 13/221 (5%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--QHLISPPYVIKPL 133
            +    + I     + ++   +Q +    +P  P                I  P +++P 
Sbjct: 656 GVKILGTTIEDLDRAENRDLFEQALQELAIPQPPGDTATSAEEAIVIADRIGYPVLVRPS 715

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
                  + +++  + +   +  +   +    +L++ Y+ G E     + D    +    
Sbjct: 716 YVLGGRAMEIVENQKDLEDYMRHAVKASPEHPVLVDSYLLGQECEVDAICDGETVLIPGI 775

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
           +   +           +S  V P + +  +I   +          + C G+    F+   
Sbjct: 776 MEHIERAGVHS----GDSMAVYPPQYLSQEIQATIADYTKKLALGLNCVGMMNIQFVIHE 831

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
              +V+ +E+N +   T     P ++   G    ++    +
Sbjct: 832 --NRVYVIEVNPRASRT----VPFLSKITGIPMAQVATKAI 866


>gi|307275823|ref|ZP_07556962.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecalis
           TX2134]
 gi|306507515|gb|EFM76646.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecalis
           TX2134]
 gi|315032024|gb|EFT43956.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecalis
           TX0017]
 gi|315144955|gb|EFT88971.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecalis
           TX2141]
          Length = 1066

 Score = 74.4 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 50/296 (16%), Positives = 108/296 (36%), Gaps = 34/296 (11%)

Query: 25  ALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNVLHGNFG 63
           AL++ G++V  ++        D+ +                +L   +PD     L G  G
Sbjct: 42  ALKEEGYEVVLVNSNPATIMTDKEIADHVYIEPITLEFVSRILRKERPDALLPTLGGQTG 101

Query: 64  EDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFT 117
            +  ++     IL+ L +    + + A   + D+   KQ++     P+  S +VN     
Sbjct: 102 LNMAMELSESGILDELNVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIVNTVEQA 161

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IE 176
           +     I  P +++P       G  +   ++ +          +   Q LIE+ + G  E
Sbjct: 162 VAFAKRIGYPIIVRPAFTLGGTGGGMCDTEEELRQIAENGLKLSPVTQCLIEKSIAGFKE 221

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +   VM D++ +   I V   + +     ++  +        +    Y+ ++  +    +
Sbjct: 222 IEYEVMRDSADNA--IVVCNMENFDPVGIHTGDSIVFAPSQTLSDYEYQMLRDASLKIIR 279

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           A+   G        DP S   + +E+N  P ++  S     +   GY   +L   +
Sbjct: 280 ALKIEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAKI 331



 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/221 (11%), Positives = 71/221 (32%), Gaps = 13/221 (5%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--QHLISPPYVIKPL 133
            +    + I     + ++   +Q +    +P  P                I  P +++P 
Sbjct: 656 GVKILGTTIEDLDRAENRDLFEQALQELAIPQPPGDTATSAEEAVVIADRIGYPVLVRPS 715

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
                  + +++  + +   +  +   +    +L++ Y+ G E     + D    +    
Sbjct: 716 YVLGGRAMEIVENQKDLEDYMRHAVKASPEHPVLVDSYLLGQECEVDAICDGETVLIPGI 775

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
           +   +           +S  V P + +  +I   +          + C G+    F+   
Sbjct: 776 MEHIERAGVHS----GDSMAVYPPQYLSQEIQATIADYTKKLALGLNCVGMMNIQFVIHE 831

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
              +V+ +E+N +   T     P ++   G    ++    +
Sbjct: 832 --NRVYVIEVNPRASRT----VPFLSKITGIPMAQVATKAI 866


>gi|307289254|ref|ZP_07569210.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecalis
           TX0109]
 gi|306499963|gb|EFM69324.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecalis
           TX0109]
 gi|315163868|gb|EFU07885.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecalis
           TX1302]
          Length = 1066

 Score = 74.4 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 50/296 (16%), Positives = 108/296 (36%), Gaps = 34/296 (11%)

Query: 25  ALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNVLHGNFG 63
           AL++ G++V  ++        D+ +                +L   +PD     L G  G
Sbjct: 42  ALKEEGYEVVLVNSNPATIMTDKEIADHVYIEPITLEFVSRILRKERPDALLPTLGGQTG 101

Query: 64  EDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFT 117
            +  ++     IL+ L +    + + A   + D+   KQ++     P+  S +VN     
Sbjct: 102 LNMAMELSESGILDELNVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIVNTVEQA 161

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IE 176
           +     I  P +++P       G  +   ++ +          +   Q LIE+ + G  E
Sbjct: 162 VAFAKQIGYPIIVRPAFTLGGTGGGMCDTEEELRQIAENGLKLSPVTQCLIEKSIAGFKE 221

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +   VM D++ +   I V   + +     ++  +        +    Y+ ++  +    +
Sbjct: 222 IEYEVMRDSADNA--IVVCNMENFDPVGIHTGDSIVFAPSQTLSDYEYQMLRDASLKIIR 279

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           A+   G        DP S   + +E+N  P ++  S     +   GY   +L   +
Sbjct: 280 ALKIEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAKI 331



 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/221 (11%), Positives = 72/221 (32%), Gaps = 13/221 (5%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--QHLISPPYVIKPL 133
            +    + I     + ++   +Q +    +P  P                I  P +++P 
Sbjct: 656 GVKILGTTIEDLDRAENRDLFEQALQELAIPQPPGDTATSAEEAVVIADRIGYPVLVRPS 715

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
                  + +++  + +   +  +   +    +L++ Y+ G E     + D  + +    
Sbjct: 716 YVLGGRAMEIVENQKDLEDYMRHAVKASPEHPVLVDSYLLGQECEVDAICDGEIVLIPGI 775

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
           +   +           +S  V P + +  +I   +          + C G+    F+   
Sbjct: 776 MEHIERAGVHS----GDSMAVYPPQYLSQEIQTTIADYTKKLALGLNCVGMMNIQFVIHE 831

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
              +V+ +E+N +   T     P ++   G    ++    +
Sbjct: 832 --NRVYVIEVNPRASRT----VPFLSKITGIPMAQVATKAI 866


>gi|293383487|ref|ZP_06629400.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecalis
           R712]
 gi|293388858|ref|ZP_06633344.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecalis
           S613]
 gi|312907684|ref|ZP_07766675.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecalis
           DAPTO 512]
 gi|312910302|ref|ZP_07769149.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecalis
           DAPTO 516]
 gi|291079278|gb|EFE16642.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecalis
           R712]
 gi|291081783|gb|EFE18746.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecalis
           S613]
 gi|310626712|gb|EFQ09995.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecalis
           DAPTO 512]
 gi|311289575|gb|EFQ68131.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecalis
           DAPTO 516]
          Length = 1066

 Score = 74.4 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 50/296 (16%), Positives = 108/296 (36%), Gaps = 34/296 (11%)

Query: 25  ALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNVLHGNFG 63
           AL++ G++V  ++        D+ +                +L   +PD     L G  G
Sbjct: 42  ALKEEGYEVVLVNSNPATIMTDKEIADHVYIEPITLEFVSRILRKERPDALLPTLGGQTG 101

Query: 64  EDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFT 117
            +  ++     IL+ L +    + + A   + D+   KQ++     P+  S +VN     
Sbjct: 102 LNMAMELSESGILDELNVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIVNTVEQA 161

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IE 176
           +     I  P +++P       G  +   ++ +          +   Q LIE+ + G  E
Sbjct: 162 VAFAKRIGYPIIVRPAFTLGGTGGGMCDTEEELRQIAENGLKLSPVTQCLIEKSIAGFKE 221

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +   VM D++ +   I V   + +     ++  +        +    Y+ ++  +    +
Sbjct: 222 IEYEVMRDSADNA--IVVCNMENFDPVGIHTGDSIVFAPSQTLSDYEYQMLRDASLKIIR 279

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           A+   G        DP S   + +E+N  P ++  S     +   GY   +L   +
Sbjct: 280 ALKIEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAKI 331



 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/221 (11%), Positives = 71/221 (32%), Gaps = 13/221 (5%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--QHLISPPYVIKPL 133
            +    + I     + ++   +Q +    +P  P                I  P +++P 
Sbjct: 656 GVKILGTTIEDLDRAENRDLFEQALQELAIPQPPGDTATSAEEAVVIADRIGYPVLVRPS 715

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
                  + +++  + +   +  +   +    +L++ Y+ G E     + D    +    
Sbjct: 716 YVLGGRAMEIVENQKDLEDYMRHAVKASPEHPVLVDSYLLGQECEVDAICDGETVLIPGI 775

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
           +   +           +S  V P + +  +I   +          + C G+    F+   
Sbjct: 776 MEHIERAGVHS----GDSMAVYPPQYLSQEIQATIADYTKKLALGLNCVGMMNIQFVIHE 831

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
              +V+ +E+N +   T     P ++   G    ++    +
Sbjct: 832 --NRVYVIEVNPRASRT----VPFLSKITGIPMAQVATKAI 866


>gi|229549864|ref|ZP_04438589.1| carbamoyl phosphate synthase large subunit [Enterococcus faecalis
           ATCC 29200]
 gi|312951646|ref|ZP_07770541.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecalis
           TX0102]
 gi|229305133|gb|EEN71129.1| carbamoyl phosphate synthase large subunit [Enterococcus faecalis
           ATCC 29200]
 gi|310630363|gb|EFQ13646.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecalis
           TX0102]
 gi|315152333|gb|EFT96349.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecalis
           TX0031]
 gi|315158224|gb|EFU02241.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecalis
           TX0312]
          Length = 1066

 Score = 74.4 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 50/296 (16%), Positives = 108/296 (36%), Gaps = 34/296 (11%)

Query: 25  ALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNVLHGNFG 63
           AL++ G++V  ++        D+ +                +L   +PD     L G  G
Sbjct: 42  ALKEEGYEVVLVNSNPATIMTDKEIADHVYIEPITLEFVSRILRKERPDALLPTLGGQTG 101

Query: 64  EDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFT 117
            +  ++     IL+ L +    + + A   + D+   KQ++     P+  S +VN     
Sbjct: 102 LNMAMELSESGILDELNVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIVNTVEQA 161

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IE 176
           +     I  P +++P       G  +   ++ +          +   Q LIE+ + G  E
Sbjct: 162 VAFAKRIGYPIIVRPAFTLGGTGGGMCDTEEELRQIAENGLKLSPVTQCLIEKSIAGFKE 221

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +   VM D++ +   I V   + +     ++  +        +    Y+ ++  +    +
Sbjct: 222 IEYEVMRDSADNA--IVVCNMENFDPVGIHTGDSIVFAPSQTLSDYEYQMLRDASLKIIR 279

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           A+   G        DP S   + +E+N  P ++  S     +   GY   +L   +
Sbjct: 280 ALKIEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAKI 331



 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/221 (11%), Positives = 71/221 (32%), Gaps = 13/221 (5%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--QHLISPPYVIKPL 133
            +    + I     + ++   +Q +    +P  P                I  P +++P 
Sbjct: 656 GVKILGTTIEDLDRAENRDLFEQALQELAIPQPPGDTATSAEEAVVIADRIGYPVLVRPS 715

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
                  + +++  + +   +  +   +    +L++ Y+ G E     + D    +    
Sbjct: 716 YVLGGRAMEIVENQKDLEDYMRHAVKASPEHPVLVDSYLLGQECEVDAICDGETVLIPGI 775

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
           +   +           +S  V P + +  +I   +          + C G+    F+   
Sbjct: 776 MEHIERAGVHS----GDSMAVYPPQYLSQEIQATIADYTKKLALGLNCVGMMNIQFVIHE 831

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
              +V+ +E+N +   T     P ++   G    ++    +
Sbjct: 832 --NRVYVIEVNPRASRT----VPFLSKITGIPMAQVATKAI 866


>gi|258404818|ref|YP_003197560.1| pyruvate carboxylase [Desulfohalobium retbaense DSM 5692]
 gi|257797045|gb|ACV67982.1| Carbamoyl-phosphate synthase L chain ATP- binding protein
           [Desulfohalobium retbaense DSM 5692]
          Length = 1230

 Score = 74.4 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/223 (14%), Positives = 81/223 (36%), Gaps = 22/223 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   ED           + +         +  +K++ + +    GVPV P    
Sbjct: 89  AIHPGWGFASEDEAFPEKCRAAGLVFIGPPSRPMHILGNKVQVRNLAKEHGVPVVPGSDG 148

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
            + ++     ++  I  P ++K   GG   GI  + +   +     ++SS         +
Sbjct: 149 AVSIDEARRIAED-IDFPIMLKAEGGGGGRGIYEVYQQSELERAFAKASSLAQASFGNPR 207

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK---IPL 221
           L +E+ +     +   V+ D   +V        D     ++ +      + P+    +  
Sbjct: 208 LYVEKLLTSIRHIEIQVIADQHGNVFAF-----DERDCTVQRNHQKLVEITPSPWPVMTE 262

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           ++ + ++  +     A+G   ++  +FL D      + +E+N 
Sbjct: 263 ELRERLKEYSRRLVSAVGYHSLATVEFLVDMEGN-PYLIEVNT 304


>gi|190891926|ref|YP_001978468.1| propionyl-CoA carboxylase, alpha subunit [Rhizobium etli CIAT 652]
 gi|190697205|gb|ACE91290.1| propionyl-CoA carboxylase protein, alpha subunit [Rhizobium etli
           CIAT 652]
          Length = 669

 Score = 74.4 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 80/220 (36%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H  +G   E     A LE   I +      A     DK+ SK+  ++ GV   P  L 
Sbjct: 77  AVHPGYGFLSERASFCAELEKQGIVFIGPKPKAIMAMGDKIESKKFANAAGVSTVPGHLG 136

Query: 113 VNRFTMDSQHL---ISPPYVIKPLKGGSSLGIIVIKKDQS----IPLDLLQSSSWNHGDQ 165
           V      ++ +   I  P +IK   GG   G+ +                ++ S    D+
Sbjct: 137 VIEDAAHAETIAGGIGYPVMIKASAGGGGKGMRIAWNQAEVRDGFERARSEAKSSFGDDR 196

Query: 166 LLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE++ V+   +   V+ DA  +V  +   +        K     +       +  +  
Sbjct: 197 VFIEKFVVEPRHIEIQVLADAHGNVVYLGERECSIQRRNQK----VAEEAPSPFLDENTR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K +   +    +A+  +     +F+ D   R  ++LE+N 
Sbjct: 253 KAMGEQSVALARAVEYQSAGTVEFIVD-RDRNFYFLEMNT 291


>gi|152989880|ref|YP_001355602.1| phosphoribosylglycinamide formyltransferase 2 [Nitratiruptor sp.
           SB155-2]
 gi|172048724|sp|A6Q186|PURT_NITSB RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|151421741|dbj|BAF69245.1| phosphoribosylglycinamide formyltransferase 2 [Nitratiruptor sp.
           SB155-2]
          Length = 388

 Score = 74.4 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 41/260 (15%), Positives = 90/260 (34%), Gaps = 47/260 (18%)

Query: 31  FKVSQIDVD--RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
            +   ID+     V  V+   KPD     +         ++A+ E  E       ++ +A
Sbjct: 53  HRSYVIDMKSKEQVLEVIFREKPDYILPEIEAIN-----IEALFEAEER---GFRVIPNA 104

Query: 89  LSMDK-----MRSKQVVSSCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGSSLGI 141
            +++K        K      G+       V+ F    ++   +  P VIKP+   S  G 
Sbjct: 105 EAVNKTMNRKNIRKFAAEELGLKTSQYRFVSSFEGLQEAARTLGFPCVIKPVMSSSGHGQ 164

Query: 142 IVIKKDQSIPLDLLQS-SSWNHGDQLLIEQYVD---------GIELTCGVMGDASLDVTE 191
            + + +  +      +  +     +L++E+++D             T  V       +  
Sbjct: 165 SIARNEADLERSWEIAKEARGDASELIVEEFIDFDYEITLLTARNETGTVF---CPPIGH 221

Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
           I       +S++            P ++     ++ + +A      +G RGI   +    
Sbjct: 222 IQKDGDYIFSWQ------------PMQMSETALQKAKEIAKTITDGLGGRGIFGVELFV- 268

Query: 252 PLSRKVFWLEINVQP---GM 268
               +V++ E++ +P   GM
Sbjct: 269 -KGDEVYFSEVSPRPHDTGM 287


>gi|157123846|ref|XP_001653941.1| carboxylase:pyruvate/acetyl-coa/propionyl-coa [Aedes aegypti]
 gi|108874193|gb|EAT38418.1| carboxylase:pyruvate/acetyl-coa/propionyl-coa [Aedes aegypti]
          Length = 1180

 Score = 74.4 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/205 (14%), Positives = 78/205 (38%), Gaps = 17/205 (8%)

Query: 69  QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLI 124
           QA+++   + +            DK+ +++     GVP+ P     +      +D     
Sbjct: 130 QAVID-AGLRFIGPSPKVVQQMGDKVAARKAAIEAGVPIVPGTDGPVTTKEEALDFCKKH 188

Query: 125 SPPYVIKPLKGGSSLGIIVI----KKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTC 179
             P + K   GG   G+ V+    + + +      ++ +      + IE++++    +  
Sbjct: 189 GLPVIFKAAYGGGGRGMRVVRKMEEVEDNFQRASSEAKAAFGNGAMFIEKFIERPRHIEV 248

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAI 238
            ++GD + +V  +           ++        + PA ++P ++  ++   A    + +
Sbjct: 249 QLLGDKAGNVVHLYE-----RDCSVQRRHQKVVEIAPAPRLPREVRDKMTEYAVKLAKHV 303

Query: 239 GCRGISRSDFLFDPLSRKVFWLEIN 263
           G       +FL D      +++E+N
Sbjct: 304 GYENAGTVEFLCDESGN-FYFIEVN 327


>gi|330508167|ref|YP_004384595.1| RimK domain-containing protein ATP-grasp [Methanosaeta concilii
           GP-6]
 gi|328928975|gb|AEB68777.1| RimK domain protein ATP-grasp, putative [Methanosaeta concilii
           GP-6]
          Length = 342

 Score = 74.4 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 41/233 (17%), Positives = 89/233 (38%), Gaps = 25/233 (10%)

Query: 71  ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------I 124
           + E+  +P       +  +  DK+     +   GV +  +  + +  +D Q        +
Sbjct: 71  MAEMYGVPVI-DDPTSIRICADKINMYMHLQKEGVSMPKTRFLKKRELDDQQARQLFDEL 129

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI-ELTCGVMG 183
             P V+K      S+ +  +   + + L + +   +   D +++++Y++   +   GV+ 
Sbjct: 130 GSPLVLKEPSTSFSVRVEKVSDVEEL-LKVAKRF-FKLSDWIVVQEYIESRFDWRVGVIN 187

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY-KEVQRLAFLAHQAIGCRG 242
              L      +P   F        + +  +     +P D    EV  L   A  AIG +G
Sbjct: 188 GQLLYACRYIIPSETFKIQAS--VNGHIVYCDVESVPADQVPPEVIDLGKQAAGAIG-KG 244

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMT--PVSIFPEMAAYAGYSFRELLLWMV 293
           +   D      + K+F +E+N  P +       +PEM       F +++  +V
Sbjct: 245 LYGVD--IKESNGKLFVIEVNDNPSLEGGEDEHYPEM-------FGQIISHLV 288


>gi|117921875|ref|YP_871067.1| carbamoyl-phosphate synthase L chain, ATP-binding [Shewanella sp.
            ANA-3]
 gi|117614207|gb|ABK49661.1| Carbamoyl-phosphate synthase L chain, ATP-binding [Shewanella sp.
            ANA-3]
          Length = 1517

 Score = 74.4 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 86/221 (38%), Gaps = 18/221 (8%)

Query: 57   VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
             LH   G   E     A+     + +    + +     +K  + +   S  VPV P    
Sbjct: 1018 ALHPGIGFLSESPQFAALCVNNGVNFVGPSVHSMTTMGNKSNAIKTSQSQNVPVVPGSHG 1077

Query: 111  -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI-----PLDLLQSSSWNHGD 164
             +      ++  + I  P ++K ++GG   GI V+K+ + +           ++++ +GD
Sbjct: 1078 ILTNAEQAVNVANEIGYPVLLKAVQGGGGKGIQVVKRPEDMIGLFQKTSTEAAAAFGNGD 1137

Query: 165  QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
              L E+YV     +   ++ D   +   + +          K    + + +    +P ++
Sbjct: 1138 LYL-EKYVTSLRHIEVQLLRDKFGNAKVLGLRDCSVQRNNQKVVEESGSTM----LPEEL 1192

Query: 224  YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             K+V         A    G    +F+++  + +V+++E+N 
Sbjct: 1193 KKQVLDYTRALGDATDYMGAGTVEFIYNLDANEVYFMEMNT 1233


>gi|315172444|gb|EFU16461.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecalis
           TX1346]
          Length = 1066

 Score = 74.4 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 50/296 (16%), Positives = 108/296 (36%), Gaps = 34/296 (11%)

Query: 25  ALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNVLHGNFG 63
           AL++ G++V  ++        D+ +                +L   +PD     L G  G
Sbjct: 42  ALKEEGYEVVLVNSNPATIMTDKEIADHVYIEPITLEFVSRILRKERPDALLPTLGGQTG 101

Query: 64  EDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFT 117
            +  ++     IL+ L +    + + A   + D+   KQ++     P+  S +VN     
Sbjct: 102 LNMAMELSESGILDELNVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIVNTVEQA 161

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IE 176
           +     I  P +++P       G  +   ++ +          +   Q LIE+ + G  E
Sbjct: 162 VAFAKRIGYPIIVRPAFTLGGTGGGMCDTEEELRQIAENGLKLSPVTQCLIEKSIAGFKE 221

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +   VM D++ +   I V   + +     ++  +        +    Y+ ++  +    +
Sbjct: 222 IEYEVMRDSADNA--IVVCNMENFDPVGIHTGDSIVFAPSQTLSDYEYQMLRDASLKIIR 279

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           A+   G        DP S   + +E+N  P ++  S     +   GY   +L   +
Sbjct: 280 ALKIEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAKI 331



 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/221 (11%), Positives = 71/221 (32%), Gaps = 13/221 (5%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--QHLISPPYVIKPL 133
            +    + I     + ++   +Q +    +P  P                I  P +++P 
Sbjct: 656 GVKILGTTIEDLDRAENRDLFEQALQELEIPQPPGDTATSAEEAVVIADRIGYPVLVRPS 715

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
                  + +++  + +   +  +   +    +L++ Y+ G E     + D    +    
Sbjct: 716 YVLGGRAMEIVENQKDLEDYMRHAVKASPEHPVLVDSYLLGQECEVDAICDGETVLIPGI 775

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
           +   +           +S  V P + +  +I   +          + C G+    F+   
Sbjct: 776 MEHIERAGVHS----GDSMAVYPPQYLSQEIQATIADYTKKLALGLNCVGMMNIQFVIHE 831

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
              +V+ +E+N +   T     P ++   G    ++    +
Sbjct: 832 --NRVYVIEVNPRASRT----VPFLSKITGIPMAQVATKAI 866


>gi|312901879|ref|ZP_07761144.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecalis
           TX0470]
 gi|311291072|gb|EFQ69628.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecalis
           TX0470]
          Length = 1066

 Score = 74.4 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 50/296 (16%), Positives = 108/296 (36%), Gaps = 34/296 (11%)

Query: 25  ALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNVLHGNFG 63
           AL++ G++V  ++        D+ +                +L   +PD     L G  G
Sbjct: 42  ALKEEGYEVVLVNSNPATIMTDKEIADHVYIEPITLEFVSRILRKERPDALLPTLGGQTG 101

Query: 64  EDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFT 117
            +  ++     IL+ L +    + + A   + D+   KQ++     P+  S +VN     
Sbjct: 102 LNMAMELSESGILDELNVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIVNTVEQA 161

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IE 176
           +     I  P +++P       G  +   ++ +          +   Q LIE+ + G  E
Sbjct: 162 VAFAKRIGYPIIVRPAFTLGGTGGGMCDTEEELRQIAENGLKLSPVTQCLIEKSIAGFKE 221

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +   VM D++ +   I V   + +     ++  +        +    Y+ ++  +    +
Sbjct: 222 IEYEVMRDSADNA--IVVCNMENFDPVGIHTGDSIVFAPSQTLSDYEYQMLRDASLKIIR 279

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           A+   G        DP S   + +E+N  P ++  S     +   GY   +L   +
Sbjct: 280 ALKIEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAKI 331



 Score = 68.6 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/221 (11%), Positives = 71/221 (32%), Gaps = 13/221 (5%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--QHLISPPYVIKPL 133
            +    + I     + ++   +Q +    +P  P                I  P +++P 
Sbjct: 656 GVKILGTTIEDLDRAENRDLFEQALQELAIPQPPGDTATSAEEAVVIADRIGYPVLVRPS 715

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
                  + +++  + +   +  +   +    +L++ Y+ G E     + D    +    
Sbjct: 716 YVLGGRAMEIVENQKDLEDYMRHAVKASPEHPVLVDSYLLGEECEVDAICDGETVLIPGI 775

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
           +   +           +S  V P + +  +I   +          + C G+    F+   
Sbjct: 776 MEHIERAGVHS----GDSMAVYPPQYLSQEIQATIADYTKKLALGLNCVGMMNIQFVIHE 831

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
              +V+ +E+N +   T     P ++   G    ++    +
Sbjct: 832 --NRVYVIEVNPRASRT----VPFLSKITGIPMAQVATKAI 866


>gi|312903464|ref|ZP_07762644.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecalis
           TX0635]
 gi|310633340|gb|EFQ16623.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecalis
           TX0635]
 gi|315577840|gb|EFU90031.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecalis
           TX0630]
          Length = 1066

 Score = 74.4 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 50/296 (16%), Positives = 108/296 (36%), Gaps = 34/296 (11%)

Query: 25  ALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNVLHGNFG 63
           AL++ G++V  ++        D+ +                +L   +PD     L G  G
Sbjct: 42  ALKEEGYEVVLVNSNPATIMTDKEIADHVYIEPITLEFVSRILRKERPDALLPTLGGQTG 101

Query: 64  EDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFT 117
            +  ++     IL+ L +    + + A   + D+   KQ++     P+  S +VN     
Sbjct: 102 LNMAMELSESGILDELNVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIVNTVEQA 161

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IE 176
           +     I  P +++P       G  +   ++ +          +   Q LIE+ + G  E
Sbjct: 162 VAFAKRIGYPIIVRPAFTLGGTGGGMCDTEEELRQIAENGLKLSPVTQCLIEKSIAGFKE 221

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +   VM D++ +   I V   + +     ++  +        +    Y+ ++  +    +
Sbjct: 222 IEYEVMRDSADNA--IVVCNMENFDPVGIHTGDSIVFAPSQTLSDYEYQMLRDASLKIIR 279

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           A+   G        DP S   + +E+N  P ++  S     +   GY   +L   +
Sbjct: 280 ALKIEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAKI 331



 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/221 (11%), Positives = 71/221 (32%), Gaps = 13/221 (5%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--QHLISPPYVIKPL 133
            +    + I     + ++   +Q +    +P  P                I  P +++P 
Sbjct: 656 GVKILGTTIEDLDRAENRDLFEQALQELAIPQPPGDTATSAEEAVVIADRIGYPVLVRPS 715

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
                  + +++  + +   +  +   +    +L++ Y+ G E     + D    +    
Sbjct: 716 YVLGGRAMEIVENQKDLEDYMRHAVKASPEHPVLVDSYLLGQECEVDAICDGETVLIPGI 775

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
           +   +           +S  V P + +  +I   +          + C G+    F+   
Sbjct: 776 MEHIERAGVHS----GDSMAVYPPQYLSQEIQATIADYTKKLALGLNCVGMMNIQFVIHE 831

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
              +V+ +E+N +   T     P ++   G    ++    +
Sbjct: 832 --NRVYVIEVNPRASRT----VPFLSKITGIPMAQVATKAI 866


>gi|310829435|ref|YP_003961792.1| carbamoyl-phosphate synthase large subunit [Eubacterium limosum
           KIST612]
 gi|308741169|gb|ADO38829.1| carbamoyl-phosphate synthase large subunit [Eubacterium limosum
           KIST612]
          Length = 1068

 Score = 74.4 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 52/287 (18%), Positives = 104/287 (36%), Gaps = 35/287 (12%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------------- 49
           G ++E + +   G     AL+  G +V  I+ + +  +    +                 
Sbjct: 21  GQAAEFDYA---GTQACKALKAVGLEVILINSNPATIMTDKAMADKIYIEPLTLDVVKRV 77

Query: 50  ----KPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
               KPD   + L G  G    +Q      L+   +    + +     + D+   K ++ 
Sbjct: 78  ILLEKPDSILSTLGGQTGLTLSMQLAKEGFLDEHNVKLLGANVETIDKAEDRQEFKDMMK 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G PV PS +V      +D    +  P +++P       G  +    + +         
Sbjct: 138 EIGEPVIPSKVVTTVDDALDFASTMGYPVIVRPAFTLGGTGGGIADNPEQLHEIATHGLR 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   Q+L+E+ + G  E+   VM D+  +V  I V   + +   +   + +S  V P +
Sbjct: 198 LSPITQILVERGISGWKEIEFEVMRDSKGNV--ITVCSMENFD-PVGIHTGDSIVVAPCQ 254

Query: 219 -IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +    Y+ ++  A     A+G  G     F  DP +     +E+N 
Sbjct: 255 TLSDKEYQMLRTSALKIISALGVEGGCNCQFALDPENFNYAVIEVNP 301



 Score = 59.8 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 37/266 (13%), Positives = 93/266 (34%), Gaps = 30/266 (11%)

Query: 22  CASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAI- 71
           CA AL++ G++   +         D D S  L    L  +   +++      DG +    
Sbjct: 580 CAWALKELGYEAIIVNNNPETVSTDFDTSDRLYFEPLTAEDVRSIVE-TEKPDGAIVQFG 638

Query: 72  ----------LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTMD 119
                     L+ + +    +       + D+     ++  C +P      V      + 
Sbjct: 639 GQTAIKLTKHLDEINVGILGTDPKYIDAAEDRELFDDLLERCAIPRPKGETVYTTEEAVK 698

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
               +  P +++P        +I+  ++  +   +   +     + +LI++Y+ G E+  
Sbjct: 699 VAERLGFPVLLRPSYVLGGQNMIIAYEEADVVEYMNIITEHELENPVLIDKYLMGTEVEV 758

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAI 238
             + D     T+  +P    +  +    S +S  V P + +  +I   +        + +
Sbjct: 759 DAICDG----TDYLIPGIMEHIEKAGVHSGDSISVYPPQTLSQEIKDTIIDYTGKLAKEL 814

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINV 264
              G+   +  +     +V+ +E+N 
Sbjct: 815 HVIGL--VNIQYVVYEGEVYVIEVNP 838


>gi|251790077|ref|YP_003004798.1| acetyl-CoA carboxylase biotin carboxylase subunit [Dickeya zeae
           Ech1591]
 gi|247538698|gb|ACT07319.1| Carbamoyl-phosphate synthase L chain ATP-binding [Dickeya zeae
           Ech1591]
          Length = 461

 Score = 74.4 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 39/219 (17%), Positives = 80/219 (36%), Gaps = 16/219 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+    A +E   + +         L  DK  +++   + GVPV P    
Sbjct: 80  AVHPGYGFLSENATFAAAVEQAGLVFVGPTAETIRLMGDKAEARRTAQAAGVPVVPGSGV 139

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQ----SIPLDLLQSSSWNHGDQL 166
           +      + +   I  P +IK   GG   GI V+  +      +P+   ++ +      +
Sbjct: 140 LSSLEAALQAAAEIGYPLLIKAAAGGGGRGIRVVNNEDDLKRELPIAQSEAKAAFGCGDV 199

Query: 167 LIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
            +E ++     +   ++GD    V           S + +   +      PA +      
Sbjct: 200 YLELFIRHARHIEVQILGDGERAVHLYE----RECSLQRRRQKVFEEAPSPA-LSSTQRD 254

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + R A    Q +  R     ++LFD    + +++E+N 
Sbjct: 255 ALCRSAVQLAQQLRYRSAGTLEYLFDTEREQFYFIEMNT 293


>gi|167044402|gb|ABZ09079.1| putative carbamoyl-phosphate synthase L chain, ATP binding domain
           protein [uncultured marine crenarchaeote HF4000_APKG6D3]
          Length = 496

 Score = 74.4 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 80/220 (36%), Gaps = 19/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     + E  ++ +      +  L  DK + K  +    VP  P    
Sbjct: 77  AVHPGYGFLSENSEFAGLCEKNKVTFIGPSAASMDLCGDKQQCKAAMLKAKVPTVPGSPD 136

Query: 111 ILVNRFTMDS-QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
           ++ +    +   + I  P ++K + GG   GI ++  DQ +         +S +      
Sbjct: 137 LVKDADEAEKIANEIGYPVMLKSVYGGGGRGIRIVNTDQELQGAYETVTGESIAAVGKSA 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDI 223
           +L+E+++     +   +  D   +   I   +        K          P+ I   + 
Sbjct: 197 ILVEKFLAQTRHIEYQLARDKHGNTVHIFERECSIQRRNQKL-----IEQTPSPIVDQET 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
              + +L   A +A+    +   +F     + + ++LEIN
Sbjct: 252 RDRIGKLVVNAAEAVDYTNLGTVEF-LRADNGEFYFLEIN 290


>gi|110825736|sp|Q29RK2|PYC_BOVIN RecName: Full=Pyruvate carboxylase, mitochondrial; AltName:
           Full=Pyruvic carboxylase; Short=PCB; Flags: Precursor
 gi|296471576|gb|DAA13691.1| pyruvate carboxylase, mitochondrial precursor [Bos taurus]
          Length = 1178

 Score = 74.4 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 31/233 (13%), Positives = 75/233 (32%), Gaps = 17/233 (7%)

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
            +  V      D      +G   E        +   + +            DK+ ++ + 
Sbjct: 101 DIIKVAKENNVDAVHPG-YGFLSERADFAQACQDAGVRFIGPSPEVVRKMGDKVEARAIA 159

Query: 101 SSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL---- 152
            + GVPV P     I       +  +    P + K   GG   G+ V+   + +      
Sbjct: 160 IAAGVPVVPGTDAPITSLHEAHEFSNTYGFPIIFKAAYGGGGRGMRVVHSYEELEENYTR 219

Query: 153 DLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
              ++ +      L +E++++    +   ++GD   ++  +            K      
Sbjct: 220 AYSEALAAFGNGALFVEKFIEKPRHIEVQILGDQYGNILHLYERDCSIQRRHQK-----V 274

Query: 212 THVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
             + P A +   +   +   +    + +G       +FL D   +  +++E+N
Sbjct: 275 VEIAPAAHLDPQLRTRLTSDSVKLAKQVGYENAGTVEFLVDRHGKH-YFIEVN 326


>gi|28872616|ref|NP_795235.1| acetyl-CoA carboxylase, biotin carboxylase [Pseudomonas syringae
           pv. tomato str. DC3000]
 gi|28855872|gb|AAO58930.1| acetyl-CoA carboxylase, biotin carboxylase, putative [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 471

 Score = 74.4 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 77/221 (34%), Gaps = 20/221 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            LH  +G   E+  +  I     I +            DK  +++ +   GVPV P    
Sbjct: 76  ALHPGYGFLSENAELADICNERGIKFIGPSAEVIRRMGDKTEARRSMIKAGVPVTPGTEG 135

Query: 114 NRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGD 164
           N   ++        I  P ++K   GG   GI      Q +           + ++   +
Sbjct: 136 NVADIEEALVEGERIGYPVMLKATSGGGGRGIRRCNSRQELEQAFPRVISEATKAFGSAE 195

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDI 223
             L +  V+   +   ++GD+  +V  +            K        + P  ++  + 
Sbjct: 196 VFLEKCIVNPKHIEAQILGDSFGNVVHLFERDCSIQRRNQKL-----IEIAPSPQLTPEQ 250

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              +  L+  A +A+G       +FL      +V+++E+N 
Sbjct: 251 RAYIGDLSVRAAKAVGYENAGTVEFLL--AEGEVYFMEMNT 289


>gi|298364394|gb|ADI79333.1| chloroplast biotin carboxylase [Brassica napus]
          Length = 535

 Score = 74.4 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 79/220 (35%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
           +LH  +G   E+ L   +     I +      +  +  DK  +++ + + GVP  P    
Sbjct: 147 MLHPGYGFLAENALFVEMCREHRINFIGPNPDSIRVMGDKSTARETMKNAGVPTVPGSDG 206

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS----IPLDLLQSSSWNHGDQ 165
            +      +   + I  P +IK   GG   G+ +  +       +      +++    D 
Sbjct: 207 LLQSTEEGVRLANEIGYPVMIKATAGGGGRGMRLANEPSEFVKLLQQAKSGAAAAFGNDG 266

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+YV +   +   ++ D   +V               K             +  ++ 
Sbjct: 267 VYLEKYVQNPRHIEFQILADKFGNVVHFGERDCSIQRRNQKLL----EEAPSPALTPELR 322

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K +   A  A  +IG  G+   +FL D      +++E+N 
Sbjct: 323 KAMGDAAVAAAASIGYIGVGTVEFLLDER-GSFYFMEMNT 361


>gi|254721419|ref|ZP_05183208.1| carbamoyl phosphate synthase large subunit [Bacillus anthracis str.
           A1055]
          Length = 1072

 Score = 74.4 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 50/314 (15%), Positives = 114/314 (36%), Gaps = 37/314 (11%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQIDVD---------------------RSVGLV 45
           G ++E + S   G     +L++ G+KV  ++ +                       V  +
Sbjct: 21  GQAAEFDYS---GTQACQSLKEEGYKVILVNSNPATIMTDTATADKVYIEPLTLEFVSRI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   +PD     L G  G +  V+     +LE   +    + + A   + D+   + ++ 
Sbjct: 78  IRKERPDAILPTLGGQTGLNMAVELAKSGVLEECGVEILGTKLSAIEQAEDRDLFRTLMQ 137

Query: 102 SCGVPVCPSILVNRFTMD--SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
               P  PS +++         + I  P +++P       G  +   ++ +   +     
Sbjct: 138 ELNEPTPPSEIIHNLDEAYGFVNEIGYPVIVRPAFTLGGTGGGICHNEEELIEIVTSGLK 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   Q L+E+ + G  E+   VM D++ +   I V   +       ++  +        
Sbjct: 198 HSPVTQCLLEKSIAGCKEIEYEVMRDSNDNA--IVVCNMENIDPVGVHTGDSIVVAPSQT 255

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278
           +    Y+ ++  +    +A+G  G        DP S + + +E+N  P ++  S     +
Sbjct: 256 LSDREYQMLRNTSLRIIRALGIEGGCNVQLALDPYSFQYYVIEVN--PRVSRSS--ALAS 311

Query: 279 AYAGYSFRELLLWM 292
              GY   +L   +
Sbjct: 312 KATGYPIAKLAAKI 325



 Score = 65.5 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 26/221 (11%), Positives = 80/221 (36%), Gaps = 20/221 (9%)

Query: 68  VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLIS 125
           + A LE   +    + +     + D+ + +  ++  G+P             +     I 
Sbjct: 642 LAAKLEEHGVKILGTSLEDLDRAEDRDKFEAALTKLGIPQPVGKTATTVEQAVAIAEEIG 701

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            P +++P        + ++ + + +   +  +   +    +LI++Y+ G E+    + D 
Sbjct: 702 YPVLVRPSYVLGGRAMEIVYRQEELLHYMKNAVKVHADHPVLIDRYMVGKEIEVDAISDG 761

Query: 186 S---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCR 241
               +      + ++  +S        +S  V P + +   + +++        + +   
Sbjct: 762 ENVFIPGIMEHIERAGVHS-------GDSIGVYPPQSLSEKLKEQIIEHTIALGKGLNIV 814

Query: 242 GISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277
           G+    F+      +V+ +E+N       P ++ ++  P  
Sbjct: 815 GLLNIQFVVFK--DQVYVIEVNPRASRTVPFLSKITGVPMA 853


>gi|261419031|ref|YP_003252713.1| carbamoyl phosphate synthase large subunit [Geobacillus sp.
           Y412MC61]
 gi|319765848|ref|YP_004131349.1| carbamoyl-phosphate synthase, large subunit [Geobacillus sp.
           Y412MC52]
 gi|261375488|gb|ACX78231.1| carbamoyl-phosphate synthase, large subunit [Geobacillus sp.
           Y412MC61]
 gi|317110714|gb|ADU93206.1| carbamoyl-phosphate synthase, large subunit [Geobacillus sp.
           Y412MC52]
          Length = 1042

 Score = 74.4 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 57/287 (19%), Positives = 108/287 (37%), Gaps = 35/287 (12%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI----------DVDRS-----------VGLV 45
           G ++E + S   G     AL++ G++V  +          +V              +  +
Sbjct: 21  GQAAEFDYS---GTQACIALKEEGYRVILVNNNPATIMTDEVHADAVYFEPLTVDVLEAI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +A  +PD       G  G +   Q     +LE   +    + I A     D+   + ++ 
Sbjct: 78  IAKERPDGLLATFGGQTGLNLAFQLHEAGVLEKYGVRLLGTPIEAIKRGEDREAFRALMH 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G PV  S +V      +     I  P +I+P       G  + +  +     + +  +
Sbjct: 138 ELGEPVPESEIVTSVEEAVAFAEQIGFPIIIRPAYTLGGTGGGIAENMEQFLALVEKGLA 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   Q LIE+ V G  E+   VM D     T I V   +     +   + +S  V P++
Sbjct: 198 ESPIRQCLIERSVAGFKEIEYEVMRDQ--SNTCITVCNMENVD-PVGIHTGDSIVVAPSQ 254

Query: 219 -IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +  + Y+ ++  A     A+G  G     F  DP S++ + +E+N 
Sbjct: 255 TLTDEEYQMLRSSAVKIISALGIIGGCNIQFALDPNSKQYYLIEVNP 301



 Score = 67.5 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 40/228 (17%), Positives = 86/228 (37%), Gaps = 22/228 (9%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL--ISPPYV 129
           LE   +              D+ R  Q++    +P  P ++ N     +     I  P +
Sbjct: 650 LEEAGVSLLGVTYDMIDQLEDRDRFYQLLEELDIPHVPGLMANNAEELAAKAAEIGCPVL 709

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA---S 186
           ++P       G+ ++  +  +   L++     +   +LI+ Y+DG E    ++ D     
Sbjct: 710 LRPSYVIGGRGMFIVHSEAQL-AALIEQGELTY--PILIDAYLDGKEAEADIVTDGTDIV 766

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISR 245
           L V    V K+  +S        +S   LPA+ +  +   ++   A    + +G +GI  
Sbjct: 767 LPVIIEHVEKAGVHS-------GDSYAWLPAQTLTDEEKAKIIDYASRIAKKLGFKGIMN 819

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
             ++       V+ LE+N +   T     P ++   G    ++   ++
Sbjct: 820 IQYVI--ADGNVYVLEVNPRASRT----VPIVSKTTGVPLAQIATKLL 861


>gi|170688824|ref|ZP_02880027.1| carbamoyl-phosphate synthase, large subunit [Bacillus anthracis
           str. A0465]
 gi|170667179|gb|EDT17939.1| carbamoyl-phosphate synthase, large subunit [Bacillus anthracis
           str. A0465]
          Length = 1073

 Score = 74.4 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 50/314 (15%), Positives = 114/314 (36%), Gaps = 37/314 (11%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQIDVD---------------------RSVGLV 45
           G ++E + S   G     +L++ G+KV  ++ +                       V  +
Sbjct: 21  GQAAEFDYS---GTQACQSLKEEGYKVILVNSNPATIMTDTATADKVYIEPLTLEFVSRI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   +PD     L G  G +  V+     +LE   +    + + A   + D+   + ++ 
Sbjct: 78  IRKERPDAILPTLGGQTGLNMAVELAKSGVLEECGVEILGTKLSAIEQAEDRDLFRTLMQ 137

Query: 102 SCGVPVCPSILVNRFTMD--SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
               P  PS +++         + I  P +++P       G  +   ++ +   +     
Sbjct: 138 ELNEPTPPSEIIHNLDEAYGFVNEIGYPVIVRPAFTLGGTGGGICHNEEELIEIVTSGLK 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   Q L+E+ + G  E+   VM D++ +   I V   +       ++  +        
Sbjct: 198 HSPVTQCLLEKSIAGCKEIEYEVMRDSNDNA--IVVCNMENIDPVGVHTGDSIVVAPSQT 255

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278
           +    Y+ ++  +    +A+G  G        DP S + + +E+N  P ++  S     +
Sbjct: 256 LSDREYQMLRNTSLRIIRALGIEGGCNVQLALDPYSFQYYVIEVN--PRVSRSS--ALAS 311

Query: 279 AYAGYSFRELLLWM 292
              GY   +L   +
Sbjct: 312 KATGYPIAKLAAKI 325



 Score = 65.5 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 37/283 (13%), Positives = 100/283 (35%), Gaps = 39/283 (13%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ------ 69
           A+++AG++   I         D   S  L    L  +   +++     E  +VQ      
Sbjct: 581 AIKEAGYEAIIINNNPETVSTDFSISDKLYFEPLTIEDVMHIIDLEKPEGVIVQFGGQTA 640

Query: 70  ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHL 123
               A LE   +    + +     + D+ + +  ++  G+P             +     
Sbjct: 641 INLAAKLEEHGVKILGTSLEDLDRAEDRDKFEAALTKLGIPQPVGKTATTVEQAVAIAEE 700

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + ++ + + +   +  +   +    +LI++Y+ G E+    + 
Sbjct: 701 IGYPVLVRPSYVLGGRAMEIVYRQEELLHYMKNAVKVHADHPVLIDRYMVGKEIEVDAIS 760

Query: 184 DAS---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIG 239
           D     +      + ++  +S        +S  V P + +   + +++        + + 
Sbjct: 761 DGENVFIPGIMEHIERAGVHS-------GDSIGVYPPQSLSEKLKEQIIEHTIALGKGLN 813

Query: 240 CRGISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277
             G+    F+      +V+ +E+N       P ++ ++  P  
Sbjct: 814 IVGLLNIQFVVFK--DQVYVIEVNPRASRTVPFLSKITGVPMA 854


>gi|167636429|ref|ZP_02394728.1| carbamoyl-phosphate synthase, large subunit [Bacillus anthracis
           str. A0442]
 gi|254739826|ref|ZP_05197519.1| carbamoyl phosphate synthase large subunit [Bacillus anthracis str.
           Kruger B]
 gi|167528171|gb|EDR90958.1| carbamoyl-phosphate synthase, large subunit [Bacillus anthracis
           str. A0442]
          Length = 1071

 Score = 74.4 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 50/314 (15%), Positives = 114/314 (36%), Gaps = 37/314 (11%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQIDVD---------------------RSVGLV 45
           G ++E + S   G     +L++ G+KV  ++ +                       V  +
Sbjct: 21  GQAAEFDYS---GTQACQSLKEEGYKVILVNSNPATIMTDTATADKVYIEPLTLEFVSRI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   +PD     L G  G +  V+     +LE   +    + + A   + D+   + ++ 
Sbjct: 78  IRKERPDAILPTLGGQTGLNMAVELAKSGVLEECGVEILGTKLSAIEQAEDRDLFRTLMQ 137

Query: 102 SCGVPVCPSILVNRFTMD--SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
               P  PS +++         + I  P +++P       G  +   ++ +   +     
Sbjct: 138 ELNEPTPPSEIIHNLDEAYGFVNEIGYPVIVRPAFTLGGTGGGICHNEEELIEIVTSGLK 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   Q L+E+ + G  E+   VM D++ +   I V   +       ++  +        
Sbjct: 198 HSPVTQCLLEKSIAGCKEIEYEVMRDSNDNA--IVVCNMENIDPVGVHTGDSIVVAPSQT 255

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278
           +    Y+ ++  +    +A+G  G        DP S + + +E+N  P ++  S     +
Sbjct: 256 LSDREYQMLRNTSLRIIRALGIEGGCNVQLALDPYSFQYYVIEVN--PRVSRSS--ALAS 311

Query: 279 AYAGYSFRELLLWM 292
              GY   +L   +
Sbjct: 312 KATGYPIAKLAAKI 325



 Score = 65.5 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 37/283 (13%), Positives = 100/283 (35%), Gaps = 39/283 (13%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ------ 69
           A+++AG++   I         D   S  L    L  +   +++     E  +VQ      
Sbjct: 579 AIKEAGYEAIIINNNPETVSTDFSISDKLYFEPLTIEDVMHIIDLEKPEGVIVQFGGQTA 638

Query: 70  ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHL 123
               A LE   +    + +     + D+ + +  ++  G+P             +     
Sbjct: 639 INLAAKLEEHGVKILGTSLEDLDRAEDRDKFEAALTKLGIPQPVGKTATTVEQAVAIAEE 698

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + ++ + + +   +  +   +    +LI++Y+ G E+    + 
Sbjct: 699 IGYPVLVRPSYVLGGRAMEIVYRQEELLHYMKNAVKVHADHPVLIDRYMVGKEIEVDAIS 758

Query: 184 DAS---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIG 239
           D     +      + ++  +S        +S  V P + +   + +++        + + 
Sbjct: 759 DGENVFIPGIMEHIERAGVHS-------GDSIGVYPPQSLSEKLKEQIIEHTIALGKGLN 811

Query: 240 CRGISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277
             G+    F+      +V+ +E+N       P ++ ++  P  
Sbjct: 812 IVGLLNIQFVVFK--DQVYVIEVNPRASRTVPFLSKITGVPMA 852


>gi|196035930|ref|ZP_03103332.1| carbamoyl-phosphate synthase, large subunit [Bacillus cereus W]
 gi|218905016|ref|YP_002452850.1| carbamoyl-phosphate synthase, large subunit [Bacillus cereus AH820]
 gi|254683404|ref|ZP_05147264.1| carbamoyl phosphate synthase large subunit [Bacillus anthracis str.
           CNEVA-9066]
 gi|226700918|sp|B7JJX3|CARB_BACC0 RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|195991579|gb|EDX55545.1| carbamoyl-phosphate synthase, large subunit [Bacillus cereus W]
 gi|218534976|gb|ACK87374.1| carbamoyl-phosphate synthase, large subunit [Bacillus cereus AH820]
          Length = 1072

 Score = 74.4 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 50/314 (15%), Positives = 114/314 (36%), Gaps = 37/314 (11%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQIDVD---------------------RSVGLV 45
           G ++E + S   G     +L++ G+KV  ++ +                       V  +
Sbjct: 21  GQAAEFDYS---GTQACQSLKEEGYKVILVNSNPATIMTDTATADKVYIEPLTLEFVSRI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   +PD     L G  G +  V+     +LE   +    + + A   + D+   + ++ 
Sbjct: 78  IRKERPDAILPTLGGQTGLNMAVELAKSGVLEECGVEILGTKLSAIEQAEDRDLFRTLMQ 137

Query: 102 SCGVPVCPSILVNRFTMD--SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
               P  PS +++         + I  P +++P       G  +   ++ +   +     
Sbjct: 138 ELNEPTPPSEIIHNLDEAYGFVNEIGYPVIVRPAFTLGGTGGGICHNEEELIEIVTSGLK 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   Q L+E+ + G  E+   VM D++ +   I V   +       ++  +        
Sbjct: 198 HSPVTQCLLEKSIAGCKEIEYEVMRDSNDNA--IVVCNMENIDPVGVHTGDSIVVAPSQT 255

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278
           +    Y+ ++  +    +A+G  G        DP S + + +E+N  P ++  S     +
Sbjct: 256 LSDREYQMLRNTSLRIIRALGIEGGCNVQLALDPYSFQYYVIEVN--PRVSRSS--ALAS 311

Query: 279 AYAGYSFRELLLWM 292
              GY   +L   +
Sbjct: 312 KATGYPIAKLAAKI 325



 Score = 65.5 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 37/283 (13%), Positives = 100/283 (35%), Gaps = 39/283 (13%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ------ 69
           A+++AG++   I         D   S  L    L  +   +++     E  +VQ      
Sbjct: 580 AIKEAGYEAIIINNNPETVSTDFSISDKLYFEPLTIEDVMHIIDLEKPEGVIVQFGGQTA 639

Query: 70  ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHL 123
               A LE   +    + +     + D+ + +  ++  G+P             +     
Sbjct: 640 INLAAKLEEHGVKILGTSLEDLDRAEDRDKFEAALTKLGIPQPVGKTATTVEQAVAIAEE 699

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + ++ + + +   +  +   +    +LI++Y+ G E+    + 
Sbjct: 700 IGYPVLVRPSYVLGGRAMEIVYRQEELLHYMKNAVKVHADHPVLIDRYMVGKEIEVDAIS 759

Query: 184 DAS---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIG 239
           D     +      + ++  +S        +S  V P + +   + +++        + + 
Sbjct: 760 DGENVFIPGIMEHIERAGVHS-------GDSIGVYPPQSLSEKLKEQIIEHTIALGKGLN 812

Query: 240 CRGISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277
             G+    F+      +V+ +E+N       P ++ ++  P  
Sbjct: 813 IVGLLNIQFVVFK--DQVYVIEVNPRASRTVPFLSKITGVPMA 853


>gi|197122234|ref|YP_002134185.1| phosphoribosylglycinamide formyltransferase 2 [Anaeromyxobacter sp.
           K]
 gi|196172083|gb|ACG73056.1| phosphoribosylglycinamide formyltransferase 2 [Anaeromyxobacter sp.
           K]
          Length = 387

 Score = 74.4 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 47/247 (19%), Positives = 93/247 (37%), Gaps = 26/247 (10%)

Query: 33  VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
           VS +D   ++  ++A  +PD+    +     E   +QA  E   +    S   A+     
Sbjct: 49  VSMLD-GAALDALVAKHRPDVIVPEIEAIRTE--RLQAY-EAQGVQVVPSARAAAVTMNR 104

Query: 93  KMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150
           +          GV        +       +   I  P V+KPL   S  G  V++ +  +
Sbjct: 105 RAIRDLAARELGVATARYAYASTPEAFRTAVREIGLPCVVKPLMSSSGKGQSVVRAEGDL 164

Query: 151 PLDLLQSSSWNHGD--QLLIEQYVDGIE----LTCGVMGDASLDVTEIAVPKSDFYSYEL 204
                 + S   GD  ++++E+++        LT       +L    I   + +   Y+ 
Sbjct: 165 EAAWSYAMSGTRGDLREVIVEEFIPFESEITLLTVTQRRGETLFCPPIG-HRQERGDYQE 223

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +         P  +P  + +E +R+A    +A+G  GI   +F       +V++ E++ 
Sbjct: 224 SW--------QPHPVPAPLLEEARRMAAAVTRALGGAGIFGVEFFLGK--DRVWFSELSP 273

Query: 265 QP---GM 268
           +P   GM
Sbjct: 274 RPHDTGM 280


>gi|149918836|ref|ZP_01907323.1| acetyl-CoA carboxylase [Plesiocystis pacifica SIR-1]
 gi|149820437|gb|EDM79853.1| acetyl-CoA carboxylase [Plesiocystis pacifica SIR-1]
          Length = 456

 Score = 74.4 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 37/228 (16%), Positives = 76/228 (33%), Gaps = 25/228 (10%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCG---VPVCPS 110
            +H  +G   E+ +  A+ E   + +         L   K  +K+ + + G   +P    
Sbjct: 78  AVHPGWGFLAENPVFAALCEQHGLTFIGPPAHVMHLMGKKTPAKKAMGTAGLTLIPGSDG 137

Query: 111 ILVNRFTMDS-QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
           IL +     +       P ++K   GG   G+ V +    +     Q+ +         +
Sbjct: 138 ILEDLDEARAVAEATGYPVLLKAESGGGGKGMRVARTADELESAWSQARAEAMAAFGDGR 197

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           L +E+ ++ G  +   +M D   +V              ++          PA  +  + 
Sbjct: 198 LYLEKLIEGGRHVEIQIMADRYGNVV-----HLGERDCTVQRKHQKLIEESPAPVLDPEE 252

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLS-------RKVFWLEINV 264
                  A  A + IG  G    +FL D            + ++E+N 
Sbjct: 253 RARTLAAAVEATRRIGYVGAGTIEFLLDQSGAGGDGQAGVLRFMEMNT 300


>gi|30263889|ref|NP_846266.1| carbamoyl phosphate synthase large subunit [Bacillus anthracis str.
           Ames]
 gi|47529318|ref|YP_020667.1| carbamoyl phosphate synthase large subunit [Bacillus anthracis str.
           'Ames Ancestor']
 gi|49186736|ref|YP_029988.1| carbamoyl phosphate synthase large subunit [Bacillus anthracis str.
           Sterne]
 gi|65321214|ref|ZP_00394173.1| COG0458: Carbamoylphosphate synthase large subunit (split gene in
           MJ) [Bacillus anthracis str. A2012]
 gi|165872300|ref|ZP_02216937.1| carbamoyl-phosphate synthase, large subunit [Bacillus anthracis
           str. A0488]
 gi|167641115|ref|ZP_02399370.1| carbamoyl-phosphate synthase, large subunit [Bacillus anthracis
           str. A0193]
 gi|170708780|ref|ZP_02899216.1| carbamoyl-phosphate synthase, large subunit [Bacillus anthracis
           str. A0389]
 gi|177654894|ref|ZP_02936611.1| carbamoyl-phosphate synthase, large subunit [Bacillus anthracis
           str. A0174]
 gi|190565897|ref|ZP_03018816.1| carbamoyl-phosphate synthase, large subunit [Bacillus anthracis
           Tsiankovskii-I]
 gi|227813205|ref|YP_002813214.1| carbamoyl-phosphate synthase, large subunit [Bacillus anthracis
           str. CDC 684]
 gi|229602930|ref|YP_002868122.1| carbamoyl-phosphate synthase, large subunit [Bacillus anthracis
           str. A0248]
 gi|254735926|ref|ZP_05193632.1| carbamoyl phosphate synthase large subunit [Bacillus anthracis str.
           Western North America USA6153]
 gi|254751016|ref|ZP_05203055.1| carbamoyl phosphate synthase large subunit [Bacillus anthracis str.
           Vollum]
 gi|254756681|ref|ZP_05208710.1| carbamoyl phosphate synthase large subunit [Bacillus anthracis str.
           Australia 94]
 gi|81837832|sp|Q81WF2|CARB_BACAN RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|254813555|sp|C3P656|CARB_BACAA RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|254813556|sp|C3L740|CARB_BACAC RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|30258533|gb|AAP27752.1| carbamoyl-phosphate synthase, large subunit [Bacillus anthracis
           str. Ames]
 gi|47504466|gb|AAT33142.1| carbamoyl-phosphate synthase, large subunit [Bacillus anthracis
           str. 'Ames Ancestor']
 gi|49180663|gb|AAT56039.1| carbamoyl-phosphate synthase, large subunit [Bacillus anthracis
           str. Sterne]
 gi|164711976|gb|EDR17516.1| carbamoyl-phosphate synthase, large subunit [Bacillus anthracis
           str. A0488]
 gi|167510895|gb|EDR86286.1| carbamoyl-phosphate synthase, large subunit [Bacillus anthracis
           str. A0193]
 gi|170126265|gb|EDS95156.1| carbamoyl-phosphate synthase, large subunit [Bacillus anthracis
           str. A0389]
 gi|172080405|gb|EDT65492.1| carbamoyl-phosphate synthase, large subunit [Bacillus anthracis
           str. A0174]
 gi|190562816|gb|EDV16782.1| carbamoyl-phosphate synthase, large subunit [Bacillus anthracis
           Tsiankovskii-I]
 gi|227005069|gb|ACP14812.1| carbamoyl-phosphate synthase, large subunit [Bacillus anthracis
           str. CDC 684]
 gi|229267338|gb|ACQ48975.1| carbamoyl-phosphate synthase, large subunit [Bacillus anthracis
           str. A0248]
          Length = 1072

 Score = 74.4 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 50/314 (15%), Positives = 114/314 (36%), Gaps = 37/314 (11%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQIDVD---------------------RSVGLV 45
           G ++E + S   G     +L++ G+KV  ++ +                       V  +
Sbjct: 21  GQAAEFDYS---GTQACQSLKEEGYKVILVNSNPATIMTDTATADKVYIEPLTLEFVSRI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   +PD     L G  G +  V+     +LE   +    + + A   + D+   + ++ 
Sbjct: 78  IRKERPDAILPTLGGQTGLNMAVELAKSGVLEECGVEILGTKLSAIEQAEDRDLFRTLMQ 137

Query: 102 SCGVPVCPSILVNRFTMD--SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
               P  PS +++         + I  P +++P       G  +   ++ +   +     
Sbjct: 138 ELNEPTPPSEIIHNLDEAYGFVNEIGYPVIVRPAFTLGGTGGGICHNEEELIEIVTSGLK 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   Q L+E+ + G  E+   VM D++ +   I V   +       ++  +        
Sbjct: 198 HSPVTQCLLEKSIAGCKEIEYEVMRDSNDNA--IVVCNMENIDPVGVHTGDSIVVAPSQT 255

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278
           +    Y+ ++  +    +A+G  G        DP S + + +E+N  P ++  S     +
Sbjct: 256 LSDREYQMLRNTSLRIIRALGIEGGCNVQLALDPYSFQYYVIEVN--PRVSRSS--ALAS 311

Query: 279 AYAGYSFRELLLWM 292
              GY   +L   +
Sbjct: 312 KATGYPIAKLAAKI 325



 Score = 65.5 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 37/283 (13%), Positives = 100/283 (35%), Gaps = 39/283 (13%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ------ 69
           A+++AG++   I         D   S  L    L  +   +++     E  +VQ      
Sbjct: 580 AIKEAGYEAIIINNNPETVSTDFSISDKLYFEPLTIEDVMHIIDLEKPEGVIVQFGGQTA 639

Query: 70  ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHL 123
               A LE   +    + +     + D+ + +  ++  G+P             +     
Sbjct: 640 INLAAKLEEHGVKILGTSLEDLDRAEDRDKFEAALTKLGIPQPVGKTATTVEQAVAIAEE 699

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + ++ + + +   +  +   +    +LI++Y+ G E+    + 
Sbjct: 700 IGYPVLVRPSYVLGGRAMEIVYRQEELLHYMKNAVKVHADHPVLIDRYMVGKEIEVDAIS 759

Query: 184 DAS---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIG 239
           D     +      + ++  +S        +S  V P + +   + +++        + + 
Sbjct: 760 DGENVFIPGIMEHIERAGVHS-------GDSIGVYPPQSLSEKLKEQIIEHTIALGKGLN 812

Query: 240 CRGISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277
             G+    F+      +V+ +E+N       P ++ ++  P  
Sbjct: 813 IVGLLNIQFVVFK--DQVYVIEVNPRASRTVPFLSKITGVPMA 853


>gi|322372313|ref|ZP_08046849.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Streptococcus
           sp. C150]
 gi|321277355|gb|EFX54424.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Streptococcus
           sp. C150]
          Length = 461

 Score = 74.4 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/220 (15%), Positives = 77/220 (35%), Gaps = 16/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  FG   E+     + E + I +            DK+ ++  +    VPV P    
Sbjct: 82  AIHPGFGFLSENSKFSTLCEEMNIKFIGPSGEVMDKMGDKINARAEMIKANVPVIPGSDG 141

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
            +      ++  + +  P ++K   GG   GI  +  ++ +         ++ +      
Sbjct: 142 EVFTAEEALEVANRLGYPVMLKASAGGGGKGIRKVSTEEELAPAFESASQEAKAAFGNGA 201

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+ +     +   ++GD+  ++  +            K             I   + 
Sbjct: 202 MYIEKVIYPARHIEVQILGDSYGNIVHLGERDCSLQRNNQKVL----EESPSVAIGKTLR 257

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            E+   A  A +A+        +FL D  + + +++E+N 
Sbjct: 258 HEIGSAAARAAKAVNYENAGTIEFLLDEKTGQFYFMEMNT 297


>gi|261492753|ref|ZP_05989301.1| biotin carboxylase [Mannheimia haemolytica serotype A2 str. BOVINE]
 gi|261495633|ref|ZP_05992079.1| biotin carboxylase [Mannheimia haemolytica serotype A2 str. OVINE]
 gi|261308740|gb|EEY09997.1| biotin carboxylase [Mannheimia haemolytica serotype A2 str. OVINE]
 gi|261311606|gb|EEY12761.1| biotin carboxylase [Mannheimia haemolytica serotype A2 str. BOVINE]
          Length = 447

 Score = 74.4 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 81/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         L  DK+ +   +   GVP  P    
Sbjct: 77  AIHPGYGFLSENANFAEQVEKSGFIFIGPTADVIRLMGDKVSAINAMKKAGVPCVPGSDG 136

Query: 112 ---LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
                 +   +    I  P +IK   GG   G+ V+  ++ +   +     ++ +  + D
Sbjct: 137 PVGNDPKKNKEIAKRIGYPVIIKASGGGGGRGMRVVHHEKDLEESIAMTKAEAKAAFNND 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+Y++    +   V+ D   +   +A           K          PA  I  +
Sbjct: 197 MVYMEKYLENPRHIEIQVLADTHGNAVYLAERDCSMQRRHQK-----VVEEAPAPGITPE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + + +      A + IG RG    +FL+   + + +++E+N 
Sbjct: 252 LRQFIGERCANACREIGYRGAGTFEFLY--ENGEFYFIEMNT 291


>gi|257419441|ref|ZP_05596435.1| carbamoyl phosphate synthase large subunit [Enterococcus faecalis
           T11]
 gi|257422467|ref|ZP_05599457.1| carbamoyl phosphate synthase large subunit [Enterococcus faecalis
           X98]
 gi|257161269|gb|EEU91229.1| carbamoyl phosphate synthase large subunit [Enterococcus faecalis
           T11]
 gi|257164291|gb|EEU94251.1| carbamoyl phosphate synthase large subunit [Enterococcus faecalis
           X98]
          Length = 1060

 Score = 74.4 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 50/296 (16%), Positives = 108/296 (36%), Gaps = 34/296 (11%)

Query: 25  ALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNVLHGNFG 63
           AL++ G++V  ++        D+ +                +L   +PD     L G  G
Sbjct: 36  ALKEEGYEVVLVNSNPATIMTDKEIADHVYIEPITLEFVSRILRKERPDALLPTLGGQTG 95

Query: 64  EDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFT 117
            +  ++     IL+ L +    + + A   + D+   KQ++     P+  S +VN     
Sbjct: 96  LNMAMELSESGILDELNVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIVNTVEQA 155

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IE 176
           +     I  P +++P       G  +   ++ +          +   Q LIE+ + G  E
Sbjct: 156 VAFAKRIGYPIIVRPAFTLGGTGGGMCDTEEELRQIAENGLKLSPVTQCLIEKSIAGFKE 215

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +   VM D++ +   I V   + +     ++  +        +    Y+ ++  +    +
Sbjct: 216 IEYEVMRDSADNA--IVVCNMENFDPVGIHTGDSIVFAPSQTLSDYEYQMLRDASLKIIR 273

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           A+   G        DP S   + +E+N  P ++  S     +   GY   +L   +
Sbjct: 274 ALKIEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAKI 325



 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/221 (11%), Positives = 71/221 (32%), Gaps = 13/221 (5%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--QHLISPPYVIKPL 133
            +    + I     + ++   +Q +    +P  P                I  P +++P 
Sbjct: 650 GVKILGTTIEDLDRAENRDLFEQALQELAIPQPPGDTATSAEEAVVIADRIGYPVLVRPS 709

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
                  + +++  + +   +  +   +    +L++ Y+ G E     + D    +    
Sbjct: 710 YVLGGRAMEIVENQKDLEDYMRHAVKASPEHPVLVDSYLLGQECEVDAICDGETVLIPGI 769

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
           +   +           +S  V P + +  +I   +          + C G+    F+   
Sbjct: 770 MEHIERAGVHS----GDSMAVYPPQYLSQEIQATIADYTKKLALGLNCVGMMNIQFVIHE 825

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
              +V+ +E+N +   T     P ++   G    ++    +
Sbjct: 826 --NRVYVIEVNPRASRT----VPFLSKITGIPMAQVATKAI 860


>gi|218893942|ref|YP_002442811.1| acetyl-CoA carboxylase biotin carboxylase subunit [Pseudomonas
           aeruginosa LESB58]
 gi|218774170|emb|CAW29987.1| biotin carboxylase [Pseudomonas aeruginosa LESB58]
          Length = 449

 Score = 74.4 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 73/222 (32%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         L  DK+ +K  +   GVP  P    
Sbjct: 77  AIHPGYGFLAENADFAEQIERSGFTFVGPTAEVIRLMGDKVSAKDAMKRAGVPTVPGSDG 136

Query: 112 LVNRFTMDS---QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGD 164
            +      +      +  P +IK   GG   G+ V+  +  +         ++ +     
Sbjct: 137 PLPEDEETALAIAREVGYPVIIKAAGGGGGRGMRVVYDESELIKSAKLTRTEAGAAFGNP 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            +  E+++     +   V+ D   +               L+          PA  I   
Sbjct: 197 MVYPEKFLTNPRHVEVQVLSDGQGNAI-----HLGDRDCSLQRRHQKVIEEAPAPGIDEK 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +EV      A   IG RG    +FL+   + + +++E+N 
Sbjct: 252 ARQEVFARCVQACIEIGYRGAGTFEFLY--ENGRFYFIEMNT 291


>gi|118479107|ref|YP_896258.1| carbamoyl phosphate synthase large subunit [Bacillus thuringiensis
           str. Al Hakam]
 gi|196047414|ref|ZP_03114626.1| carbamoyl-phosphate synthase, large subunit [Bacillus cereus
           03BB108]
 gi|225865868|ref|YP_002751246.1| carbamoyl-phosphate synthase, large subunit [Bacillus cereus
           03BB102]
 gi|166989832|sp|A0RHQ8|CARB_BACAH RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|254813557|sp|C1EPQ0|CARB_BACC3 RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|118418332|gb|ABK86751.1| carbamoyl-phosphate synthase large subunit [Bacillus thuringiensis
           str. Al Hakam]
 gi|196021722|gb|EDX60417.1| carbamoyl-phosphate synthase, large subunit [Bacillus cereus
           03BB108]
 gi|225790296|gb|ACO30513.1| carbamoyl-phosphate synthase, large subunit [Bacillus cereus
           03BB102]
          Length = 1072

 Score = 74.4 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 53/315 (16%), Positives = 119/315 (37%), Gaps = 39/315 (12%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQIDVD---------------------RSVGLV 45
           G ++E + S   G     +L++ G+KV  ++ +                       V  +
Sbjct: 21  GQAAEFDYS---GTQACQSLKEEGYKVILVNSNPATIMTDTATADKVYIEPLTLEFVSRI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   +PD     L G  G +  V+     +LE   +    + + A   + D+   + ++ 
Sbjct: 78  IRKERPDAILPTLGGQTGLNMAVELAKSGVLEECGVEILGTKLSAIEQAEDRDLFRTLMQ 137

Query: 102 SCGVPVCPSILVNRFTMD--SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
               P  PS +++         + I  P +++P       G  +   ++ +   +     
Sbjct: 138 ELNEPTPPSEIIHNLDEAYGFVNEIGYPVIVRPAFTLGGTGGGICHNEEELIEIVTSGLK 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   Q L+E+ + G  E+   VM D++ +   I V   +       ++  +S  V P++
Sbjct: 198 HSPVTQCLLEKSIAGCKEIEYEVMRDSNDNA--IVVCNMENIDPVGVHT-GDSIVVAPSQ 254

Query: 219 -IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
            +    Y+ ++  +    +A+G  G        DP S + + +E+N  P ++  S     
Sbjct: 255 TLSDREYQMLRNTSLRIIRALGIEGGCNVQLALDPYSFQYYVIEVN--PRVSRSS--ALA 310

Query: 278 AAYAGYSFRELLLWM 292
           +   GY   +L   +
Sbjct: 311 SKATGYPIAKLAAKI 325



 Score = 65.5 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 37/283 (13%), Positives = 100/283 (35%), Gaps = 39/283 (13%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ------ 69
           A+++AG++   I         D   S  L    L  +   +++     E  +VQ      
Sbjct: 580 AIKEAGYEAIIINNNPETVSTDFSISDKLYFEPLTIEDVMHIIDLEKPEGVIVQFGGQTA 639

Query: 70  ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHL 123
               A LE   +    + +     + D+ + +  ++  G+P             +     
Sbjct: 640 INLAAKLEEHGVKILGTSLEDLDRAEDRDKFEAALTKLGIPQPVGKTATTVEQAVAIAEE 699

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + ++ + + +   +  +   +    +LI++Y+ G E+    + 
Sbjct: 700 IGYPVLVRPSYVLGGRAMEIVYRQEELLHYMKNAVKVHADHPVLIDRYMVGKEIEVDAIS 759

Query: 184 DAS---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIG 239
           D     +      + ++  +S        +S  V P + +   + +++        + + 
Sbjct: 760 DGENVFIPGIMEHIERAGVHS-------GDSIGVYPPQSLSEKLKEQIIEHTIALGKGLN 812

Query: 240 CRGISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277
             G+    F+      +V+ +E+N       P ++ ++  P  
Sbjct: 813 IVGLLNIQFVVFK--DQVYVIEVNPRASRTVPFLSKITGVPMA 853


>gi|89886131|ref|NP_808815.2| pyruvate carboxylase, mitochondrial precursor [Bos taurus]
 gi|88954111|gb|AAI14136.1| Pyruvate carboxylase [Bos taurus]
          Length = 1178

 Score = 74.4 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 31/233 (13%), Positives = 75/233 (32%), Gaps = 17/233 (7%)

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
            +  V      D      +G   E        +   + +            DK+ ++ + 
Sbjct: 101 DIIKVAKENNVDAVHPG-YGFLSERADFAQACQDAGVRFIGPSPEVVRKMGDKVEARAIA 159

Query: 101 SSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL---- 152
            + GVPV P     I       +  +    P + K   GG   G+ V+   + +      
Sbjct: 160 IAAGVPVVPGTDAPITSLHEAHEFSNTYGFPIIFKAAYGGGGRGMRVVHSYEELEENYTR 219

Query: 153 DLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
              ++ +      L +E++++    +   ++GD   ++  +            K      
Sbjct: 220 AYSEALAAFGNGALFVEKFIEKPRHIEVQILGDQYGNILHLYERDCSIQRRHQK-----V 274

Query: 212 THVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
             + P A +   +   +   +    + +G       +FL D   +  +++E+N
Sbjct: 275 VEIAPAAHLDPQLRTRLTSDSVKLAKQVGYENAGTVEFLVDRHGKH-YFIEVN 326


>gi|21219081|ref|NP_624860.1| pyruvate carboxylase [Streptomyces coelicolor A3(2)]
 gi|6137048|emb|CAB59603.1| pyruvate carboxylase [Streptomyces coelicolor A3(2)]
          Length = 1124

 Score = 74.4 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 38/216 (17%), Positives = 75/216 (34%), Gaps = 17/216 (7%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV----CPSILVN 114
           +G   E+  +    E   I +         L+ +K R+       GVPV     PS  V+
Sbjct: 83  YGFLSENPELARACEEAGITFVGPSARILELTGNKARAVAAAREAGVPVLGSSAPSTDVD 142

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQLLIEQ 170
              + +   +  P  +K + GG   G+  +++   +   +  +S           + +E+
Sbjct: 143 EL-VRAADDVGFPVFVKAVAGGGGRGMRRVEEPAQLREAIEAASREAASAFGDSTVFLEK 201

Query: 171 Y-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQ 228
             V+   +   ++ D   DV              ++        + PA  +   + + + 
Sbjct: 202 AVVEPRHIEVQILADGEGDVI-----HLFERDCSVQRRHQKVIELAPAPNLDPALRERIC 256

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             A    + IG R     +FL D     VF  E+N 
Sbjct: 257 ADAVNFARQIGYRNAGTVEFLVDRDGNHVFI-EMNP 291


>gi|227518905|ref|ZP_03948954.1| carbamoyl phosphate synthase large subunit [Enterococcus faecalis
           TX0104]
 gi|227073594|gb|EEI11557.1| carbamoyl phosphate synthase large subunit [Enterococcus faecalis
           TX0104]
 gi|315576074|gb|EFU88265.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecalis
           TX0309B]
 gi|315580649|gb|EFU92840.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecalis
           TX0309A]
          Length = 1066

 Score = 74.4 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 50/296 (16%), Positives = 108/296 (36%), Gaps = 34/296 (11%)

Query: 25  ALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNVLHGNFG 63
           AL++ G++V  ++        D+ +                +L   +PD     L G  G
Sbjct: 42  ALKEEGYEVVLVNSNPATIMTDKEIADHVYIEPITLEFVSRILRKERPDALLPTLGGQTG 101

Query: 64  EDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFT 117
            +  ++     IL+ L +    + + A   + D+   KQ++     P+  S +VN     
Sbjct: 102 LNMAMELSESGILDELNVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIVNTVEQA 161

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IE 176
           +     I  P +++P       G  +   ++ +          +   Q LIE+ + G  E
Sbjct: 162 VAFAKRIGYPIIVRPAFTLGGTGGGMCDTEEELRQIAENGLKLSPVTQCLIEKSIAGFKE 221

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +   VM D++ +   I V   + +     ++  +        +    Y+ ++  +    +
Sbjct: 222 IEYEVMRDSADNA--IVVCNMENFDPVGIHTGDSIVFAPSQTLSDYEYQMLRDASLKIIR 279

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           A+   G        DP S   + +E+N  P ++  S     +   GY   +L   +
Sbjct: 280 ALKIEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAKI 331



 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/221 (11%), Positives = 71/221 (32%), Gaps = 13/221 (5%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--QHLISPPYVIKPL 133
            +    + I     + ++   +Q +    +P  P                I  P +++P 
Sbjct: 656 GVKILGTTIEDLDRAENRDLFEQALQELAIPQPPGDTATSAEEAVVIADRIGYPVLVRPS 715

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
                  + +++  + +   +  +   +    +L++ Y+ G E     + D    +    
Sbjct: 716 YVLGGRAMEIVENQKDLEDYMRHAVKASPEHPVLVDSYLLGQECEVDAICDGETVLIPGI 775

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
           +   +           +S  V P + +  +I   +          + C G+    F+   
Sbjct: 776 MEHIERAGVHS----GDSMAVYPPQYLSQEIQATIADYTKKLALGLNCVGMMNIQFVIHE 831

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
              +V+ +E+N +   T     P ++   G    ++    +
Sbjct: 832 --NRVYVIEVNPRASRT----VPFLSKITGIPMAQVATKAI 866


>gi|226313358|ref|YP_002773252.1| carbamoyl-phosphate synthase large chain [Brevibacillus brevis NBRC
           100599]
 gi|226096306|dbj|BAH44748.1| carbamoyl-phosphate synthase large chain [Brevibacillus brevis NBRC
           100599]
          Length = 1070

 Score = 74.4 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 53/286 (18%), Positives = 110/286 (38%), Gaps = 33/286 (11%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI---------DVD------------RSVGLV 45
           G ++E + +   G     AL++ G +V  I         D +              V  V
Sbjct: 21  GQAAEFDYA---GTQACEALKEEGMEVVLINSNPATIMTDTNMADKVYIEPITPEFVARV 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   KPD     L G  G +  V      +LE   +    + + +   + D+   + +++
Sbjct: 78  IRQEKPDGLLPTLGGQTGLNMAVALSEAGVLEQENVKLLGTKLESIKQAEDRDLFRSLMN 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G PV  S++V+     +D  + I  P +++P       G  +   ++++   +     
Sbjct: 138 ELGEPVPESVIVSTIEEAVDFANEIGYPIIVRPAYTLGGTGGGICDDEETLREIVASGLK 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
           ++   Q LIE+ + G  E+   VM DA+ +   I V   +       ++  +        
Sbjct: 198 YSPITQCLIEKSIAGMKEIEYEVMRDANDN--CIVVCNMENIDPVGVHTGDSIVVAPSQT 255

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +    Y+ ++  A    +A+G  G     +  DP S + + +E+N 
Sbjct: 256 LADREYQMLRTSALNIIRALGIEGGCNVQYALDPHSFQYYVIEVNP 301



 Score = 70.5 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 41/294 (13%), Positives = 100/294 (34%), Gaps = 38/294 (12%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ------ 69
           AL +AG++   I         D + S  L    L  +   N+L     E  +VQ      
Sbjct: 579 ALREAGYEAVIINNNPETVSTDFNTSDRLYFEPLYIEDVMNILDVEKPEGVIVQFGGQTA 638

Query: 70  ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHL 123
                 L    I    + +     + ++ + + ++    +   P   V        +   
Sbjct: 639 INLADKLTARGIKILGTSLENIDAAENREKFEALLRELEIAQPPGKTVTSVDQAVVAAEG 698

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           +  P +++P        + ++     +   + ++   N    +L+++Y+ GIE     + 
Sbjct: 699 LGFPVLVRPSYVLGGRAMEIVYNQPELLEYMEKAVKVNPDHPVLVDRYMVGIEAEVDAIC 758

Query: 184 DAS---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIG 239
           D     +      + ++  +S        +S  V P + +   I  E+  +     +A+ 
Sbjct: 759 DGENVLIPGIMEHIERAGVHS-------GDSIAVYPPQSLSQAIKDELIDMTTKLARALQ 811

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            +G+    F+      + + +E+N +   T     P ++   G     +    +
Sbjct: 812 IKGLLNIQFVIYK--DRPYVIEVNPRSSRT----VPFLSKVTGIPMANIATKAI 859


>gi|167767818|ref|ZP_02439871.1| hypothetical protein CLOSS21_02353 [Clostridium sp. SS2/1]
 gi|167710557|gb|EDS21136.1| hypothetical protein CLOSS21_02353 [Clostridium sp. SS2/1]
 gi|291558851|emb|CBL37651.1| acetyl-CoA carboxylase, biotin carboxylase [butyrate-producing
           bacterium SSC/2]
          Length = 455

 Score = 74.4 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 71/220 (32%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  FG   E+     + E   I +            +K  +++ +   GVPV P    
Sbjct: 77  AIHPGFGFLSENSKFVRMCEKCNITFIGPSAEIIDRMGNKSAARKTMMDAGVPVVPGTKD 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS----IPLDLLQSSSWNHGDQ 165
            +            +  P +IK   GG   G+ V    +          L++ +      
Sbjct: 137 AVYEAEAGQKIADDMGYPVMIKASAGGGGKGMRVCYDSEDFVHTFETAKLEAENAFGDGT 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+Y+ D   +   ++ D   +   +            K             I  +  
Sbjct: 197 MYIEKYIEDPRHIEFQILADKYGNTIHLGERDCSIQRRHQK----LIEESPSPAISDEQR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K++  +A  A +A         +FL D      +++E+N 
Sbjct: 253 KKMGEIAVKAAKAAEYYSAGTIEFLRDKH-GDFYFIEMNT 291


>gi|49479112|ref|YP_037948.1| carbamoyl phosphate synthase large subunit [Bacillus thuringiensis
           serovar konkukian str. 97-27]
 gi|81828222|sp|Q6HES8|CARB_BACHK RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|49330668|gb|AAT61314.1| carbamoyl-phosphate synthase [Bacillus thuringiensis serovar
           konkukian str. 97-27]
          Length = 1072

 Score = 74.4 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 50/314 (15%), Positives = 113/314 (35%), Gaps = 37/314 (11%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQIDVD---------------------RSVGLV 45
           G ++E + S   G     +L++ G+KV  ++ +                       V  +
Sbjct: 21  GQAAEFDYS---GTQACQSLKEEGYKVILVNSNPATIMTDTATADKVYIEPLTLEFVSRI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   +PD     L G  G +  V+     +LE   +    + + A   + D+   + ++ 
Sbjct: 78  IRKERPDAILPTLGGQTGLNMAVELAKSGVLEECGVEILGTKLSAIEQAEDRDLFRTLMQ 137

Query: 102 SCGVPVCPSILVNRFTMD--SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
               P  PS +++           I  P +++P       G  +   ++ +   +     
Sbjct: 138 ELNEPTPPSEIIHNLDEAYGFVKEIGYPVIVRPAFTLGGTGGGICHNEEELIEIVTSGLK 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   Q L+E+ + G  E+   VM D++ +   I V   +       ++  +        
Sbjct: 198 HSPVTQCLLEKSIAGCKEIEYEVMRDSNDNA--IVVCNMENIDPVGVHTGDSIVVAPSQT 255

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278
           +    Y+ ++  +    +A+G  G        DP S + + +E+N  P ++  S     +
Sbjct: 256 LSDREYQMLRNTSLRIIRALGIEGGCNVQLALDPYSFQYYVIEVN--PRVSRSS--ALAS 311

Query: 279 AYAGYSFRELLLWM 292
              GY   +L   +
Sbjct: 312 KATGYPIAKLAAKI 325



 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 37/283 (13%), Positives = 100/283 (35%), Gaps = 39/283 (13%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ------ 69
           A+++AG++   I         D   S  L    L  +   +++     E  +VQ      
Sbjct: 580 AIKEAGYEAIIINNNPETVSTDFSISDKLYFEPLTIEDVMHIIDLEKPEGVIVQFGGQTA 639

Query: 70  ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHL 123
               A LE   +    + +     + D+ + +  ++  G+P             +     
Sbjct: 640 INLAAKLEEHGVKILGTSLEDLDRAEDRDKFEAALTKLGIPQPVGKTATTVEQAVAIAEE 699

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + ++ + + +   +  +   +    +LI++Y+ G E+    + 
Sbjct: 700 IGYPVLVRPSYVLGGRAMEIVYRQEELLHYMKNAVKVHADHPVLIDRYMVGKEIEVDAIS 759

Query: 184 DAS---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIG 239
           D     +      + ++  +S        +S  V P + +   + +++        + + 
Sbjct: 760 DGENVFIPGIMEHIERAGVHS-------GDSIGVYPPQSLSEKLKEQIIEHTIALGKGLN 812

Query: 240 CRGISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277
             G+    F+      +V+ +E+N       P ++ ++  P  
Sbjct: 813 IVGLLNIQFVV--FEDQVYVIEVNPRASRTVPFLSKITGVPMA 853


>gi|42526107|ref|NP_971205.1| acetyl-CoA carboxylase, biotin carboxylase [Treponema denticola
           ATCC 35405]
 gi|41816219|gb|AAS11086.1| acetyl-CoA carboxylase, biotin carboxylase [Treponema denticola
           ATCC 35405]
          Length = 439

 Score = 74.4 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 35/213 (16%), Positives = 76/213 (35%), Gaps = 15/213 (7%)

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVNR 115
           G   E+      +E   + +         +  DK+R+++     G+PV P     I    
Sbjct: 83  GFLSENAGFAREVENAGLFWIGPKPDTIEMLGDKVRARETAVKSGLPVTPGSDGAIKELA 142

Query: 116 FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQLLIEQY 171
               +      P +IK   GG   G+ ++ K+  +  +L  +S+          + IE+Y
Sbjct: 143 EAKKTAEKCGYPVIIKAASGGGGKGMRIVYKESELAENLKIASAEAEANFADGTVYIEKY 202

Query: 172 -VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            VD   +   ++G+    V+ +            K             +  ++ + + + 
Sbjct: 203 LVDPRHVELQILGNGKGAVSVLGERDCSV----QKNHQKLIEESPSPAVSEEMREAMCKG 258

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
           A     ++  RG    +FL        +++E+N
Sbjct: 259 AVSLFSSLKYRGAGTIEFLV--SGNNFYFMEVN 289


>gi|15678762|ref|NP_275879.1| hypothetical protein MTH736 [Methanothermobacter thermautotrophicus
           str. Delta H]
 gi|2621825|gb|AAB85240.1| conserved protein [Methanothermobacter thermautotrophicus str.
           Delta H]
          Length = 338

 Score = 74.4 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 46/245 (18%), Positives = 95/245 (38%), Gaps = 29/245 (11%)

Query: 31  FKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAI------LEL-LEIPYTHSG 83
           + +    ++  + + L     D    ++    G DG ++ +      LE    +P   SG
Sbjct: 46  YHIVPRGMEGPLEIALRE-DVDAVVPLI----GVDGPLRDVAWLKEKLEADYGVPVVASG 100

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIV 143
             A+ +S DK ++K+  S   +      L++      + +   P V+K  +G    G++V
Sbjct: 101 PEAAEISTDKFKTKEFFSRNRIRTPEYDLIDS----PEDVTEMPVVLKQREGQGGSGVMV 156

Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM--GDASLDVTEIAVPKSDFYS 201
                 +   L    + +H    L+E+Y+ G E++  V+   D +L +  +    +    
Sbjct: 157 AATPSDVREYL---HAHDH---ALMEEYIQGREISVEVLRWNDETLPLVAVDKGDTRMDG 210

Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
                  L      PA I      E   +A    + +G  G +  D +      K++ +E
Sbjct: 211 LHP----LRKVKRAPAIIRGFDGMEALAMASEVTELLGAEGNTDVDMIVSE-DGKLYAIE 265

Query: 262 INVQP 266
           +N +P
Sbjct: 266 VNTRP 270


>gi|315156134|gb|EFU00151.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecalis
           TX0043]
          Length = 1066

 Score = 74.4 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 50/296 (16%), Positives = 108/296 (36%), Gaps = 34/296 (11%)

Query: 25  ALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNVLHGNFG 63
           AL++ G++V  ++        D+ +                +L   +PD     L G  G
Sbjct: 42  ALKEEGYEVVLVNSNPATIMTDKEIADHVYIEPITLEFVSRILRKERPDALLPTLGGQTG 101

Query: 64  EDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFT 117
            +  ++     IL+ L +    + + A   + D+   KQ++     P+  S +VN     
Sbjct: 102 LNMAMELSESGILDELNVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIVNTVEQA 161

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IE 176
           +     I  P +++P       G  +   ++ +          +   Q LIE+ + G  E
Sbjct: 162 VAFAKRIGYPIIVRPAFTLGGTGGGMCDTEEELRQIAENGLKLSPVTQCLIEKSIAGFKE 221

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +   VM D++ +   I V   + +     ++  +        +    Y+ ++  +    +
Sbjct: 222 IEYEVMRDSADNA--IVVCNMENFDPVGIHTGDSIVFAPSQTLSDYEYQMLRDASLKIIR 279

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           A+   G        DP S   + +E+N  P ++  S     +   GY   +L   +
Sbjct: 280 ALKIEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAKI 331



 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/221 (11%), Positives = 71/221 (32%), Gaps = 13/221 (5%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--QHLISPPYVIKPL 133
            +    + I     + ++   +Q +    +P  P                I  P +++P 
Sbjct: 656 GVKILGTTIEDLDRAENRDLFEQALQELAIPQPPGDTATSAEEAVVIADRIGYPVLVRPS 715

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
                  + +++  + +   +  +   +    +L++ Y+ G E     + D    +    
Sbjct: 716 YVLGGRAMEIVENQKDLEDYMRHAVKASPEHPVLVDSYLLGQECEVDAICDGETVLIPGI 775

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
           +   +           +S  V P + +  +I   +          + C G+    F+   
Sbjct: 776 MEHIERAGVHS----GDSMAVYPPQYLSQEIQATIADYTKKLALGLNCVGMMNIQFVIHE 831

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
              +V+ +E+N +   T     P ++   G    ++    +
Sbjct: 832 --NRVYVIEVNPRASRT----VPFLSKITGIPMAQVATKAI 866


>gi|86360107|ref|YP_471996.1| methylcrotonoyl-CoA carboxylase biotinylated subunit protein
           [Rhizobium etli CFN 42]
 gi|86284209|gb|ABC93269.1| methylcrotonoyl-CoA carboxylase biotinylated subunit protein
           [Rhizobium etli CFN 42]
          Length = 620

 Score = 74.4 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 39/225 (17%), Positives = 82/225 (36%), Gaps = 22/225 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      +E   I +  +   A      K  +K+++ + GVPV P  L 
Sbjct: 76  AIHPGYGFLSENAEFAEAVEKAGILWVGAPPAAIRAMGLKDAAKELMQAAGVPVTPGYLG 135

Query: 114 NRFT----MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
              +             P +IK + GG   G+  + + +     L+    ++++    D+
Sbjct: 136 PDQSEARLAAEADATGYPVLIKAVAGGGGKGMRRVDRREDFSELLVSCRREAAASFGDDR 195

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           +LIE+Y+ +   +   V  D   +               L+          PA  +    
Sbjct: 196 VLIERYIANPRHIEVQVFADQHGNCV-----HLFERDCSLQRRHQKVMEEAPAPGLDAVT 250

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR----KVFWLEINV 264
              +   A  A +A+   G    +F+ D        +++++E+N 
Sbjct: 251 RAAICDAAVRAAKAVNYVGAGTIEFIADASQGLHPDRIWFMEMNT 295


>gi|119773718|ref|YP_926458.1| acetyl-CoA carboxylase multifunctional enzyme accADC, carboxyl
            transferase subunit alpha/carboxyl transferase subunit
            beta/biotin carboxylase [Shewanella amazonensis SB2B]
 gi|119766218|gb|ABL98788.1| acetyl-CoA carboxylase multifunctional enzyme accADC, carboxyl
            transferase subunit alpha/carboxyl transferase subunit
            beta/biotin carboxylase [Shewanella amazonensis SB2B]
          Length = 1517

 Score = 74.4 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 86/221 (38%), Gaps = 18/221 (8%)

Query: 57   VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
             LH   G   E     A+     + +    + +     +K  + +   +  VPV P    
Sbjct: 1018 ALHPGIGFLSESPQFAALCVNNGVNFVGPSVHSMTTMGNKSNAIKTSQAQNVPVVPGSHG 1077

Query: 111  -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL-----DLLQSSSWNHGD 164
             +      ++    I  P ++K ++GG   GI V+K+ + +           ++++ +GD
Sbjct: 1078 ILSNAEQAVNVASEIGYPVLLKAVQGGGGKGIQVVKRPEDMIPLFMKTSTEAAAAFGNGD 1137

Query: 165  QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
              L E+YV     +   ++ D   +   + +          K    + + +    +P ++
Sbjct: 1138 LYL-EKYVTSLRHIEVQLLRDKFGNAKVLGLRDCSVQRNNQKVIEESGSTM----LPPEL 1192

Query: 224  YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             ++V         A+   G    +F+++  + +V+++E+N 
Sbjct: 1193 KQQVMAYTKSLGDAVDYMGAGTVEFIYNLDANEVYFMEMNT 1233


>gi|296218891|ref|XP_002755617.1| PREDICTED: pyruvate carboxylase, mitochondrial [Callithrix jacchus]
          Length = 1178

 Score = 74.4 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 31/233 (13%), Positives = 75/233 (32%), Gaps = 17/233 (7%)

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
            +  V      D      +G   E        +   + +            DK+ ++ + 
Sbjct: 101 DIIKVAKENNVDAVHPG-YGFLSERADFAQACQDAGVRFIGPSPEVVRKMGDKVEARAIA 159

Query: 101 SSCGVPVCPSILVNRFTMDSQHLI----SPPYVIKPLKGGSSLGIIVIKKDQSIPL---- 152
            + GVPV P       ++   H        P + K   GG   G+ V+   + +      
Sbjct: 160 IAAGVPVVPGTDAPIMSLQEAHEFSNTYGFPIIFKAAYGGGGRGMRVVHSYEELEENYTR 219

Query: 153 DLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
              ++ +      L +E++++    +   ++GD   ++  +            K      
Sbjct: 220 AYSEALAAFGNGALFVEKFIEKPRHIEVQILGDQYGNILHLYERDCSIQRRHQK-----V 274

Query: 212 THVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
             + P A +   +   +   +    + +G       +FL D   +  +++E+N
Sbjct: 275 VEIAPAAHLDPQLRTRLTSDSVKLAKQVGYENAGTVEFLVDRHGKH-YFIEVN 326


>gi|75909231|ref|YP_323527.1| phosphoribosylglycinamide formyltransferase 2 [Anabaena variabilis
           ATCC 29413]
 gi|123609081|sp|Q3M8Q4|PURT_ANAVT RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|75702956|gb|ABA22632.1| formate-dependent phosphoribosylglycinamide formyltransferase
           [Anabaena variabilis ATCC 29413]
          Length = 391

 Score = 74.4 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 44/241 (18%), Positives = 88/241 (36%), Gaps = 27/241 (11%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
             +  V+   +PD     +     E   +Q   E   I        A+  +M++ R +++
Sbjct: 61  DDLEAVVTKYQPDFIIPEIEAIRTE--KLQE-FEDRGITVI-PTAAATNYTMNRDRIREL 116

Query: 100 V-SSCGVPVCPS---ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD-- 153
                G+        I +      S   I  P V+KP+   S  G  V+   + +     
Sbjct: 117 AHEELGIRTAKYGYAITLEELIAVSDE-IGFPNVVKPVMSSSGKGQSVVATKEEVEKAWN 175

Query: 154 LLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAV--PKSDFYSYELKYSSLN 210
              ++S     ++++E++++  IE+T   +          +    + +   Y+  +    
Sbjct: 176 YAIANSRGDSQKVIVEEFINFEIEITLLTIKQWDSPTIFCSPIGHRQERGDYQESW---- 231

Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP---G 267
                PA I  D   E Q +A     A+G  GI   +F       +V + E++ +P   G
Sbjct: 232 ----QPAGISEDKILEAQAIAKKVTDALGGAGIFGVEFFITK--DEVIFSELSPRPHDTG 285

Query: 268 M 268
           M
Sbjct: 286 M 286


>gi|29376268|ref|NP_815422.1| carbamoyl phosphate synthase large subunit [Enterococcus faecalis
           V583]
 gi|81838905|sp|Q834E2|CARB_ENTFA RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|29343731|gb|AAO81492.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecalis
           V583]
          Length = 1060

 Score = 74.4 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 50/296 (16%), Positives = 108/296 (36%), Gaps = 34/296 (11%)

Query: 25  ALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNVLHGNFG 63
           AL++ G++V  ++        D+ +                +L   +PD     L G  G
Sbjct: 36  ALKEEGYEVVLVNSNPATIMTDKEIADHVYIEPITLEFVSRILRKERPDALLPTLGGQTG 95

Query: 64  EDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFT 117
            +  ++     IL+ L +    + + A   + D+   KQ++     P+  S +VN     
Sbjct: 96  LNMAMELSESGILDELNVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIVNTVEQA 155

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IE 176
           +     I  P +++P       G  +   ++ +          +   Q LIE+ + G  E
Sbjct: 156 VAFAKRIGYPIIVRPAFTLGGTGGGMCDTEEELRQIAENGLKLSPVTQCLIEKSIAGFKE 215

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +   VM D++ +   I V   + +     ++  +        +    Y+ ++  +    +
Sbjct: 216 IEYEVMRDSADNA--IVVCNMENFDPVGIHTGDSIVFAPSQTLSDYEYQMLRDASLKIIR 273

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           A+   G        DP S   + +E+N  P ++  S     +   GY   +L   +
Sbjct: 274 ALKIEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAKI 325



 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/221 (11%), Positives = 71/221 (32%), Gaps = 13/221 (5%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--QHLISPPYVIKPL 133
            +    + I     + ++   +Q +    +P  P                I  P +++P 
Sbjct: 650 GVKILGTTIEDLDRAENRDLFEQALQELAIPQPPGDTATSAEEAVVIADRIGYPVLVRPS 709

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
                  + +++  + +   +  +   +    +L++ Y+ G E     + D    +    
Sbjct: 710 YVLGGRAMEIVENQKDLEDYMRHAVKASPEHPVLVDSYLLGQECEVDAICDGETVLIPGI 769

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
           +   +           +S  V P + +  +I   +          + C G+    F+   
Sbjct: 770 MEHIERAGVHS----GDSMAVYPPQYLSQEIQATIADYTKKLALGLNCVGMMNIQFVIHE 825

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
              +V+ +E+N +   T     P ++   G    ++    +
Sbjct: 826 --NRVYVIEVNPRASRT----VPFLSKITGIPMAQVATKAI 860


>gi|315221721|ref|ZP_07863637.1| carbamoyl-phosphate synthase, large subunit [Streptococcus
           anginosus F0211]
 gi|315189208|gb|EFU22907.1| carbamoyl-phosphate synthase, large subunit [Streptococcus
           anginosus F0211]
          Length = 1059

 Score = 74.4 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 25/225 (11%), Positives = 73/225 (32%), Gaps = 13/225 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYV 129
           L    +    + +     + D+   +Q +    +P  P            +   I  P +
Sbjct: 646 LSKAGVKILGTQVADLDRAEDRDLFEQALKDLNIPQPPGQTATNEEEAVVAASKIGFPVL 705

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           ++P        + +++ +  +   +  +   +    +L++ Y+ G E     + D    +
Sbjct: 706 VRPSYVLGGRAMEIVENEADLRSYMRTAVKASPDHPVLVDSYIVGKECEVDAISDGHQVL 765

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               +   +           +S  V P + +   + + +          + C G+    F
Sbjct: 766 IPGIMEHIERAGVHS----GDSMAVYPPQTLSAQVQRTIADYTKKLAIGLHCIGMMNIQF 821

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +      KV+ +E+N +   T     P ++        ++   ++
Sbjct: 822 VI--KDEKVYVIEVNPRASRT----VPFLSKVTDIPMAQVATRLI 860



 Score = 74.4 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 53/301 (17%), Positives = 110/301 (36%), Gaps = 35/301 (11%)

Query: 20  KACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNVL 58
           +AC S L++ G+ V  ++        D+ +                +L   +PD     L
Sbjct: 32  QACLS-LKEEGYTVVLVNSNPATIMTDKEIADKVYIEPITLEFVTRILRKERPDALLPTL 90

Query: 59  HGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
            G  G +  ++     IL+ L +    + + A   + D+   KQ++     P+  S +VN
Sbjct: 91  GGQTGLNMAMELSKKGILDELGVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIVN 150

Query: 115 --RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                +D    I  P +++P       G  +   ++ +          +   Q LIE+ +
Sbjct: 151 TVEEAVDFAAKIGYPVIVRPAFTLGGTGGGMCANEEELREIAENGLKLSPVTQCLIERSI 210

Query: 173 DG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
            G  E+   VM DA+ +   + V   + +     ++  +        I     + ++  +
Sbjct: 211 AGFKEIEYEVMRDAADNA--LVVCNMENFDPVGVHTGDSIVFAPTQTISDYENQMLRDAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S   + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LKIIRALKIEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325


>gi|149927198|ref|ZP_01915455.1| acetyl-CoA carboxylase subunit A [Limnobacter sp. MED105]
 gi|149824137|gb|EDM83358.1| acetyl-CoA carboxylase subunit A [Limnobacter sp. MED105]
          Length = 449

 Score = 74.4 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 81/221 (36%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H  +G   E+      +E     +      +  L  DK+ +K+ + + GVP  P    
Sbjct: 77  AIHPGYGFLSENASFADRVEKSGFVFIGPRAESILLMGDKVSAKRAMIAAGVPCVPGSEG 136

Query: 113 ----VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
                 R  +     +  P +IK   GG   G+ V+  + ++   +     ++ S  +  
Sbjct: 137 ELPDDPREIVKIARQVGYPVIIKAAGGGGGRGMRVVHTEAALLNAVTMTKTEAGSAFNNP 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            + +E++++    +   ++ D   +   +            K             IP  +
Sbjct: 197 AVYMEKFLENPRHIEIQILADEHKNAVWLGERDCSMQRRHQK----VIEEAPAPNIPRRL 252

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +      A + IG RG    +FL+   + + +++E+N 
Sbjct: 253 IERIGERCAEACRKIGYRGAGTFEFLY--ENGEFYFIEMNT 291


>gi|293365151|ref|ZP_06611868.1| carbamoyl-phosphate synthase, large subunit [Streptococcus oralis
           ATCC 35037]
 gi|307703689|ref|ZP_07640630.1| carbamoyl-phosphate synthase, large subunit [Streptococcus oralis
           ATCC 35037]
 gi|291316601|gb|EFE57037.1| carbamoyl-phosphate synthase, large subunit [Streptococcus oralis
           ATCC 35037]
 gi|307622524|gb|EFO01520.1| carbamoyl-phosphate synthase, large subunit [Streptococcus oralis
           ATCC 35037]
          Length = 1058

 Score = 74.4 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 26/228 (11%), Positives = 77/228 (33%), Gaps = 19/228 (8%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYV 129
           L    +    + +     + D+   +Q +    +P  P            +   I  P +
Sbjct: 646 LAKAGVTILGTQVADLDRAEDRDLFEQALKDLDIPQPPGQTATNEEEAVLAARKIGFPVL 705

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS--- 186
           ++P        + +++ ++ +   +  +   +    +L++ Y+ G E     + D     
Sbjct: 706 VRPSYVLGGRAMEIVENEEDLRSYMRTAVKASPDHPVLVDSYIVGQECEVDAISDGKNVL 765

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISR 245
           +      + ++  +S        +S  V P + +   + + +          + C G+  
Sbjct: 766 IPGIMEHIERAGVHS-------GDSMAVYPPQTLSQKVQETIADYTKRLAIGLNCLGMMN 818

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
             F+      KV+ +E+N +   T     P ++        ++   ++
Sbjct: 819 IQFVI--KDEKVYVIEVNPRASRT----VPFLSKVTNIPMAQVATKLI 860



 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 54/302 (17%), Positives = 115/302 (38%), Gaps = 37/302 (12%)

Query: 20  KACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNVL 58
           +AC S L++ G++V  ++        D+ +                +L   +PD     L
Sbjct: 32  QACLS-LKEEGYEVVLVNSNPATIMTDKEIADKVYIEPITLEFVTRILRKERPDALLPTL 90

Query: 59  HGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
            G  G +  ++     IL+ L +    + + A   + D+   KQ++     P+  S +VN
Sbjct: 91  GGQTGLNMAMELSKNGILDELGVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIVN 150

Query: 115 --RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                +     I  P +++P       G  +   ++ +          +   Q LIE+ +
Sbjct: 151 TVEEAVAFAASIGYPVIVRPAFTLGGTGGGMCANEEELREISENGLKLSPVTQCLIERSI 210

Query: 173 DG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRL 230
            G  E+   VM D++ +   + V   + +   +   + +S    PA+ +     + ++  
Sbjct: 211 AGFKEIEYEVMRDSADNA--LVVCNMENFD-PVGIHTGDSIVFAPAQTMSDYENQMLRDA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    +A+   G        DP S K + +E+N  P ++  S     +   GY   +L  
Sbjct: 268 SLSIIRALKIEGGCNVQLALDPHSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325


>gi|224812401|gb|ACN64839.1| PokAC2 [Streptomyces diastatochromogenes]
          Length = 470

 Score = 74.4 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 36/219 (16%), Positives = 74/219 (33%), Gaps = 17/219 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     +     I +            DK   + +++  G+P+ P    
Sbjct: 77  AIHPGYGFLSENADFAEVCAAEGITFIGPPPEVMEALGDKSTCRGLMADAGLPLLPGTLD 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ----SSSWNHGDQ 165
            +   R        I  P V+K + GG   GI V       P    +    +++     +
Sbjct: 137 PVSSPREAEAFAAEIGYPVVVKAVAGGGGRGIGVAHSADEFPAVYRETRRHAAAVFGDGR 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+Y+     +   ++ D   +V  +            K             +  D+ 
Sbjct: 197 VYLERYLQSARHVEIQILADRFGNVIHLGERDCSVQRRHQK----LIEETPAPGLDRDVL 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
             +   A    +A G  G    +FL+D   R  +++E+N
Sbjct: 253 AAMAEHAVQGAKAAGYVGAGTFEFLYDDSGR-FYFMEVN 290


>gi|109105240|ref|XP_001107814.1| PREDICTED: pyruvate carboxylase, mitochondrial isoform 2 [Macaca
           mulatta]
          Length = 1178

 Score = 74.4 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 31/233 (13%), Positives = 75/233 (32%), Gaps = 17/233 (7%)

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
            +  V      D      +G   E        +   + +            DK+ ++ + 
Sbjct: 101 DIIKVAKENNVDAVHPG-YGFLSERADFAQACQDAGVRFIGPSPEVVRKMGDKVEARAIA 159

Query: 101 SSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL---- 152
            + GVPV P     I       +  +    P + K   GG   G+ V+   + +      
Sbjct: 160 IAAGVPVVPGTDAPITSLHEAHEFSNTYGFPIIFKAAYGGGGRGMRVVHSYEELEENYTR 219

Query: 153 DLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
              ++ +      L +E++++    +   ++GD   ++  +            K      
Sbjct: 220 AYSEALAAFGNGALFVEKFIEKPRHIEVQILGDQYGNILHLYERDCSIQRRHQK-----V 274

Query: 212 THVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
             + P A +   +   +   +    + +G       +FL D   +  +++E+N
Sbjct: 275 VEIAPAAHLDPQLRTRLTSDSVKLAKQVGYENAGTVEFLVDRHGKH-YFIEVN 326


>gi|550486|gb|AAB64306.1| pyruvate carboxylase [Aedes aegypti]
          Length = 1195

 Score = 74.4 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/205 (14%), Positives = 78/205 (38%), Gaps = 17/205 (8%)

Query: 69  QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLI 124
           QA+++   + +            DK+ +++     GVP+ P     +      +D     
Sbjct: 130 QAVID-AGLRFIGPSPKVVQQMGDKVAARKAAIEAGVPIVPGTDGPVTTKEEALDFCKKH 188

Query: 125 SPPYVIKPLKGGSSLGIIVI----KKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTC 179
             P + K   GG   G+ V+    + + +      ++ +      + IE++++    +  
Sbjct: 189 GLPVIFKAAYGGGGRGMRVVRKMEEVEDNFQRASSEAKAAFGNGAMFIEKFIERPRHIEV 248

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAI 238
            ++GD + +V  +           ++        + PA ++P ++  ++   A    + +
Sbjct: 249 QLLGDKAGNVVHLYE-----RDCSVQRRHQKVVEIAPAPRLPREVRDKMTEYAVKLAKHV 303

Query: 239 GCRGISRSDFLFDPLSRKVFWLEIN 263
           G       +FL D      +++E+N
Sbjct: 304 GYENAGTVEFLCDESGN-FYFIEVN 327


>gi|1101029|gb|AAA82937.1| pyruvate carboxylase precursor [Homo sapiens]
          Length = 1178

 Score = 74.4 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 31/233 (13%), Positives = 75/233 (32%), Gaps = 17/233 (7%)

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
            +  V      D      +G   E        +   + +            DK+ ++ + 
Sbjct: 101 DIIKVAKENNVDAVHPG-YGFLSERADFAQACQDAGVRFIGPSPEVVRKMGDKVEARAIA 159

Query: 101 SSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL---- 152
            + GVPV P     I       +  +    P + K   GG   G+ V+   + +      
Sbjct: 160 IAAGVPVVPGTDAPITSLHEAHEFSNTYGFPIIFKAAYGGGGRGMRVVHSYEELEENYTR 219

Query: 153 DLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
              ++ +      L +E++++    +   ++GD   ++  +            K      
Sbjct: 220 AYSEALAAFGNGALFVEKFIEKPRHIEVQILGDQYGNILHLYERDCSIQRRHQK-----V 274

Query: 212 THVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
             + P A +   +   +   +    + +G       +FL D   +  +++E+N
Sbjct: 275 VEIAPAAHLDPQLRTRLTSDSVKLAKQVGYENAGTVEFLVDRHGKH-YFIEVN 326


>gi|329117619|ref|ZP_08246336.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Streptococcus
           parauberis NCFD 2020]
 gi|326908024|gb|EGE54938.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Streptococcus
           parauberis NCFD 2020]
          Length = 454

 Score = 74.4 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 76/220 (34%), Gaps = 16/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  FG   E+     + E ++I +            DK+ ++  +    VPV P    
Sbjct: 77  AIHPGFGFLSENSKFATMCEEMQIKFIGPSASIMDKMGDKINARAEMIKASVPVIPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
            I            I  P ++K   GG   GI  ++++  +      +S           
Sbjct: 137 QIHTVEEARKLAASIGFPLMLKASAGGGGKGIRKVEQEVDLVAAFNSASQEAISAFGNGA 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+ +     +   ++GDA   V  +            K             I   + 
Sbjct: 197 MYMEKVIYPARHIEVQILGDAFGHVIHLGERDCSLQRNNQKVL----EESPSIAIGRSLR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +E+   A  A +A+G       +FL D  S + +++E+N 
Sbjct: 253 QEMGDAAVRAAKAVGYENAGTIEFLLDEASGQFYFMEMNT 292


>gi|256810330|ref|YP_003127699.1| phosphoribosylglycinamide formyltransferase 2 [Methanocaldococcus
           fervens AG86]
 gi|256793530|gb|ACV24199.1| phosphoribosylglycinamide formyltransferase 2 [Methanocaldococcus
           fervens AG86]
          Length = 389

 Score = 74.4 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 37/249 (14%), Positives = 98/249 (39%), Gaps = 24/249 (9%)

Query: 31  FKVSQIDVDR--SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPY-THSGILAS 87
            +   ID+    ++  V+   KPD     +           A+++  ++ Y       A+
Sbjct: 53  HRSYVIDMKDYDALMAVIEREKPDYIVPEIEAIN-----TDALIDAEKMGYNVVPTAEAT 107

Query: 88  ALSMDKMRSKQVVSS-CGVPVCPSILVNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVI 144
            ++M++   +++ +   G+        +      D+   I  P V+KP+   S  G  +I
Sbjct: 108 KITMNRELIRRLAAEKLGLRTAKYAFADSLDELRDAVENIGLPCVVKPIMSSSGKGQSII 167

Query: 145 KKDQSIPLDL--LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSY 202
           ++++ I       +  +   G+++++E++++  +    ++   + + T+   P       
Sbjct: 168 RREEDIEKAWITAKEGARGLGNRVIVEEFIN-FDYEITLLTARTAEGTKFCEPIGHIQI- 225

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
                        P  +  ++ ++ Q++A     A+G  GI   +        +V + E+
Sbjct: 226 ----DGDYHESWQPHNMSDELKEQAQKIAKKVTDALGGYGIFGVELFVKE--DEVIFSEV 279

Query: 263 NVQP---GM 268
           + +P   GM
Sbjct: 280 SPRPHDTGM 288


>gi|238019707|ref|ZP_04600133.1| hypothetical protein VEIDISOL_01582 [Veillonella dispar ATCC 17748]
 gi|237863748|gb|EEP65038.1| hypothetical protein VEIDISOL_01582 [Veillonella dispar ATCC 17748]
          Length = 1066

 Score = 74.4 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 40/262 (15%), Positives = 98/262 (37%), Gaps = 28/262 (10%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH--------GNFGEDGL 67
           AL  AG++   I         D D S  L    L  D    ++           FG    
Sbjct: 578 ALRKAGYQSIMINNNPETVSTDFDISDSLYFEPLTVDDVMEIIEKEKPAGVIAQFGGQTA 637

Query: 68  V--QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTMDSQHL 123
           +     L    +    + + +  ++ D+ R  ++++  G+P     LV  +     +   
Sbjct: 638 INLAGPLAKRGVKILGTSVDSIDMAEDRERFDELLAKLGIPRPVGALVTSDEEAQAAAKN 697

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           +  P +++P        + ++  D+ + + + ++   +    +LI++Y+ G+E+    + 
Sbjct: 698 LKYPLIVRPSYVLGGRAMEIVYNDKELDVYMKEAVVASKEHPVLIDRYMVGMEVEVDAIS 757

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRG 242
           D     T++ +P            S +S  V PA+ +  +I  ++          +  +G
Sbjct: 758 DG----TDVCIPGIMEQIERAGVHSGDSMAVYPAQHLSQEIIDQIVDYTRRIAIGLNVKG 813

Query: 243 ISRSDFLFDPLSRKVFWLEINV 264
           +    ++      ++  +E+N 
Sbjct: 814 VLNIQYIV--ADGELNVIEVNP 833



 Score = 60.5 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 48/286 (16%), Positives = 99/286 (34%), Gaps = 33/286 (11%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI---------DVD------------RSVGLV 45
           G ++E + +   G     +L + G+KV  +         D D              V  V
Sbjct: 19  GQAAEFDYA---GTQACRSLREEGYKVVLVNSNPATIMTDTDIADRVYVEPISLEFVTEV 75

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   +P      L G  G +  VQ     +LE   +    + + A   + D+   K+ + 
Sbjct: 76  IKKERPWGLLATLGGQVGLNMAVQLSEAGVLEEYGVKLLGTTLEAIKQAEDRELFKEAMK 135

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
               PV  S + N     +   + I  P +I+P       G  +   +  +     +   
Sbjct: 136 EINQPVPESDIFNDLEEAVAFANRIGYPIIIRPAYTLGGTGGGIAHNEDEMYEITRRGLK 195

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   Q+L E+ V G  E+   VM D++ +   I V   +       ++  +        
Sbjct: 196 LSPIHQILAERSVAGWKEIEYEVMRDSADN--CIIVCNMENIDPVGVHTGDSIVVAPSQT 253

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +    Y+ ++  +    + +   G     +  +P S +   +E+N 
Sbjct: 254 LNDIQYQMLRTASVEIIRYLKIEGGCNVQYALNPNSNEYIVIEVNP 299


>gi|225681855|gb|EEH20139.1| acetyl-/propionyl-coenzyme A carboxylase alpha chain
           [Paracoccidioides brasiliensis Pb03]
          Length = 1204

 Score = 74.4 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 27/218 (12%), Positives = 71/218 (32%), Gaps = 17/218 (7%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVN 114
           +G   E+     + +   I +      +      K R++++    GVP+ P     +   
Sbjct: 44  YGFLSENTDFARMAKEAGIAFAGPSPESIEAFGLKHRARELAIDAGVPIVPGTQSLVKDE 103

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-----SSSWNHGDQLLIE 169
              +++   +  P ++K   GG  +G++    ++ +            + + +G   +  
Sbjct: 104 EEAVNASKKLGFPVMLKATAGGGGMGLLTCHSEEEVRESFATVKSRGEALFKNGGMFIER 163

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI---PLDIYKE 226
            Y     +   V G+           +        K          P+       ++ ++
Sbjct: 164 YYPSSHHIEVQVFGNGLGKAIHFGERECSIQRRHQK-----VVEECPSPFVTKHPELRQK 218

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +   A    ++         ++L D  +   F+LE+N 
Sbjct: 219 LCDAAVRLAESTKYASAGTIEYLVDDDTGDFFFLEMNT 256


>gi|152978227|ref|YP_001343856.1| carbamoyl phosphate synthase large subunit [Actinobacillus
           succinogenes 130Z]
 gi|150839950|gb|ABR73921.1| carbamoyl-phosphate synthase, large subunit [Actinobacillus
           succinogenes 130Z]
          Length = 1069

 Score = 74.4 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 50/278 (17%), Positives = 100/278 (35%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVDRS------------VGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +         D D +            V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYKVVLVNSNPATIMTDPDMADVTYIEPIQWQIVEKIIEKERPDAILP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      +L+   +    +   A   + D+ R K+ ++  G+    S +
Sbjct: 89  TMGGQTALNCALDLSKNGVLKKYGVELIGATEDAIDKAEDRGRFKEAMAKIGLNTPKSFV 148

Query: 113 VNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            + F     +Q  +  P +I+P       G  +            +    +   +LLIEQ
Sbjct: 149 CHTFDEAWKAQEKVGFPTLIRPSFTMGGSGGGIAYNRDEFQAICERGFDASPTHELLIEQ 208

Query: 171 YVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            V G  E    V+ D + + +   ++   D           +S  V PA+ +    Y+ +
Sbjct: 209 SVLGWKEYEMEVVRDKADNCIIVCSIENFDPMGVHT----GDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RNASLAVLREIGVDTGGSNVQFAVNPANGEMIVIEMNP 302



 Score = 56.3 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 36/262 (13%), Positives = 94/262 (35%), Gaps = 27/262 (10%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH-----GNFGEDG---- 66
           AL ++GF+   +         D D S  L    L  +    ++H     G     G    
Sbjct: 582 ALRESGFETIMVNCNPETVSTDFDTSDRLYFEPLTLEDVLEIVHTERPWGVIVHYGGQTP 641

Query: 67  -LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHL 123
             +   L    +    +   +   + D+ R ++++    +    +      +  +     
Sbjct: 642 LKLANALHDNGVNIIGTSADSIDAAEDRERFQKILQDLNLKQPNNRTARNAQEAVTLADE 701

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVM 182
           +  P V++P        + ++     +   + ++ S ++   +L++ ++ + IE+    +
Sbjct: 702 VGYPLVVRPSYVLGGRAMQIVYNVDELNKYMREAVSVSNDSPILLDHFLNNAIEVDVDCI 761

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D +  V    +   +       +S  ++  + P  +P  +  E++R      +A+   G
Sbjct: 762 CDGTDVVMGGIMQHIEQAGI---HSGDSACSLPPYSLPKGVQDEIRRQTAAMARALNVVG 818

Query: 243 ISRSDFLFDPLSRKVFWLEINV 264
           +    F     +  +F LE+N 
Sbjct: 819 LMNVQFAV--QNDVIFVLEVNP 838


>gi|117926298|ref|YP_866915.1| carbamoyl-phosphate synthase large subunit [Magnetococcus sp. MC-1]
 gi|117610054|gb|ABK45509.1| carbamoyl-phosphate synthase large subunit [Magnetococcus sp. MC-1]
          Length = 1074

 Score = 74.4 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 48/278 (17%), Positives = 102/278 (36%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G++V  +         D +             SV  ++A  +PD    
Sbjct: 29  SGAQACKALKEEGYEVVLVNSNPATIMTDPELADRTYVEPITLASVTRIIAKERPDAILP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      +LE   +    +   A + + D+ R KQ +   G+ +  S  
Sbjct: 89  TMGGQTALNMALNLADAGVLEQYNVELIGASRDAISKAEDRERFKQAMDDIGLEMPKSGF 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +      + Q  +  P +I+P       G  +    +     + +  + +   ++L+E+
Sbjct: 149 AHSMEEAWEIQTEVGYPTIIRPSFTLGGTGGGIAYNSEEFEEIIRRGLAASPTTEVLVEE 208

Query: 171 YVDG-IELTCGVMGDA-SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            V G  E    V+ D     +   ++   D           +S  V PA+ +    Y+ +
Sbjct: 209 SVLGWKEFEMEVVRDRLDNAIIVCSIENFDPMGVHT----GDSITVAPAQTLTDKEYQIL 264

Query: 228 QRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
           + ++    + IG   G S   F   P + ++  +E+N 
Sbjct: 265 RDVSIAVLREIGVDTGGSNVQFAIHPENGRLVVIEMNP 302



 Score = 69.8 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 86/220 (39%), Gaps = 12/220 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           LE   +P   +   A  ++ D+ R + ++   G+   P+ +    +  +     I  P V
Sbjct: 652 LEAAGVPIIGTTPEAIDVAEDRERFQVLLQKLGLRQPPNGIARSEQEAIREAEAIGFPVV 711

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++   + +   +  +   +    +LI+ ++ D IE+    + D    
Sbjct: 712 VRPSYVLGGRAMEIVHDVKDLERYMRTAVQASPDHPVLIDHFLRDAIEIDVDCIADGKTA 771

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           V    +   +       +S  ++  + P  + LD+  E++R   +   A+  +G+    F
Sbjct: 772 VVAGIMEHIEEAGV---HSGDSACSLPPYSVGLDLINEIERQTKMLAAALEVKGLMNIQF 828

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
                   V+ LE+N +   T     P ++   G  F +L
Sbjct: 829 AIQK--GAVYILEVNPRASRT----VPFVSKATGVPFAKL 862


>gi|319745061|gb|EFV97388.1| carbamoyl-phosphate synthase, large subunit [Streptococcus
           agalactiae ATCC 13813]
          Length = 1060

 Score = 74.4 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 27/217 (12%), Positives = 78/217 (35%), Gaps = 20/217 (9%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           L    +    + +     + ++ + +  + +  +P  P          +++   I  P +
Sbjct: 646 LNKAGVKILGTQLEDLDRAENRKQFEATLQALNIPQPPGFTATTEEEAVNAAQKIGYPVL 705

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS--- 186
           ++P        + +++ ++ +   +  +   +    +LI+ Y+ G E     + D     
Sbjct: 706 VRPSYVLGGRAMKIVENEEDLRHYMTTAVKASPDHPVLIDAYLIGKECEVDAISDGQNIL 765

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISR 245
           +      + ++  +S        +S  V P + +   I + +          + C G+  
Sbjct: 766 IPAIMEHIERAGVHS-------GDSMAVYPPQTLSETIIETIVDYTKRLAIGLNCIGMMN 818

Query: 246 SDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277
             F+     +KV+ +E+N       P ++ V+  P  
Sbjct: 819 IQFVI--KDQKVYVIEVNPRASRTLPFLSKVTHIPMA 853



 Score = 73.2 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 58/315 (18%), Positives = 119/315 (37%), Gaps = 39/315 (12%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQID-------VDRSVGL--------------V 45
           G ++E + S   G     +L++ G++V  ++        D+ +                +
Sbjct: 21  GQAAEFDYS---GTQACLSLKEEGYQVVLVNSNPATIMTDKDIADKVYIEPITLEFVTRI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           L   +PD     L G  G +  +      ILE L +    + + A   + D+   KQ++ 
Sbjct: 78  LRKERPDALLPTLGGQTGLNMAMALSKNGILEELNVELLGTKLSAIDKAEDRDLFKQLME 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
               P+  S +VN     +     I  P +++P       G  +    + +     +   
Sbjct: 138 ELNQPIPESEIVNSVEEAIQFAEQIGYPLIVRPAFTLGGTGGGMCDNQEQLVDITTKGLK 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   Q LIE+ + G  E+   VM DA+ +   + V   + +   +   + +S    PA+
Sbjct: 198 LSPVTQCLIERSIAGFKEIEYEVMRDAADNA--LVVCNMENFD-PVGIHTGDSIVFAPAQ 254

Query: 219 IPLDIYKE-VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
              D+  + ++  +    +A+   G        DP S K + +E+N  P ++  S     
Sbjct: 255 TLSDVENQLLRDASLDIIRALKIEGGCNVQLALDPNSFKYYVIEVN--PRVSRSS--ALA 310

Query: 278 AAYAGYSFRELLLWM 292
           +   GY   +L   +
Sbjct: 311 SKATGYPIAKLAAKI 325


>gi|115380650|ref|ZP_01467584.1| pyruvate carboxylase subunit A [Stigmatella aurantiaca DW4/3-1]
 gi|115362342|gb|EAU61643.1| pyruvate carboxylase subunit A [Stigmatella aurantiaca DW4/3-1]
          Length = 484

 Score = 74.4 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 45/240 (18%), Positives = 82/240 (34%), Gaps = 23/240 (9%)

Query: 38  VDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKM 94
           V   +  V  H   D     +H  +G   E+       E   I +      A     +K 
Sbjct: 45  VQERILEVARHAGAD----AIHPGYGFLSENASFVRACEKAGITFIGPPASAMDAMGEKT 100

Query: 95  RSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150
           R++Q +   GVPV P     I      +     I  P ++K   GG   G+  ++K +  
Sbjct: 101 RARQNMIQAGVPVVPGTTEPIATQEEALAYAQKIGFPVMLKAAGGGGGKGMRKVEKTEEF 160

Query: 151 PLDLLQSS-----SWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYEL 204
                 +      ++   D + IE+Y+D    +   V  D       +   +        
Sbjct: 161 DSAWRSAKSEALNAFG-NDAVYIEKYLDKPHHVEIQVFADQYGTTVHLGERECSAQRRHQ 219

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K             +  ++  ++  +A  A +A+   G    +FL D   R  ++LE+N 
Sbjct: 220 K----VVEETPSPILTPELRAQMGEVAVKAAKAVNYVGAGTVEFLVDAH-RNFYFLEMNT 274


>gi|71909613|ref|YP_287200.1| Acetyl-CoA carboxylase, biotin carboxylase [Dechloromonas aromatica
           RCB]
 gi|71849234|gb|AAZ48730.1| Acetyl-CoA carboxylase, biotin carboxylase [Dechloromonas aromatica
           RCB]
          Length = 667

 Score = 74.4 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 77/220 (35%), Gaps = 16/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+      LE   I +      + A   DK+ SK++     V   P    
Sbjct: 77  AVHPGYGFLSENAGFSRRLEEEGIKFIGPKHYSIAKMGDKIESKKLAIEAKVNTIPGYNE 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD----LLQSSSWNHGDQ 165
            I      +     I  P +IK   GG   G+ V   D          + ++ +    D+
Sbjct: 137 AIAGPDEAVKIAQGIGYPVMIKASAGGGGKGLRVAYNDAEAHEGFSSCVNEARNSFGDDR 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+YV +   +   V+GD+  +   +            K             +  ++ 
Sbjct: 197 VFIEKYVLEPRHIEIQVLGDSHGNYVYLNERDCSIQRRHQK----VIEEAPSPFVDPEMR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K +   A    +A+        +F+    +++ ++LE+N 
Sbjct: 253 KAMGEQAVALARAVNYESAGTVEFVVSGATKEFYFLEMNT 292


>gi|106049292|ref|NP_071504.2| pyruvate carboxylase, mitochondrial precursor [Homo sapiens]
 gi|106049295|ref|NP_000911.2| pyruvate carboxylase, mitochondrial precursor [Homo sapiens]
 gi|106049528|ref|NP_001035806.1| pyruvate carboxylase, mitochondrial precursor [Homo sapiens]
 gi|1709947|sp|P11498|PYC_HUMAN RecName: Full=Pyruvate carboxylase, mitochondrial; AltName:
           Full=Pyruvic carboxylase; Short=PCB; Flags: Precursor
 gi|458236|gb|AAA99537.1| pyruvate: carbon-dioxide ligase (ADP-forming) [Homo sapiens]
 gi|15079594|gb|AAH11617.1| Pyruvate carboxylase [Homo sapiens]
 gi|119594974|gb|EAW74568.1| pyruvate carboxylase, isoform CRA_a [Homo sapiens]
 gi|119594975|gb|EAW74569.1| pyruvate carboxylase, isoform CRA_a [Homo sapiens]
 gi|119594976|gb|EAW74570.1| pyruvate carboxylase, isoform CRA_a [Homo sapiens]
 gi|119594977|gb|EAW74571.1| pyruvate carboxylase, isoform CRA_a [Homo sapiens]
 gi|119594978|gb|EAW74572.1| pyruvate carboxylase, isoform CRA_a [Homo sapiens]
 gi|261858108|dbj|BAI45576.1| pyruvate carboxylase [synthetic construct]
 gi|1092179|prf||2023166A pyruvate carboxylase
          Length = 1178

 Score = 74.4 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 31/233 (13%), Positives = 75/233 (32%), Gaps = 17/233 (7%)

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
            +  V      D      +G   E        +   + +            DK+ ++ + 
Sbjct: 101 DIIKVAKENNVDAVHPG-YGFLSERADFAQACQDAGVRFIGPSPEVVRKMGDKVEARAIA 159

Query: 101 SSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL---- 152
            + GVPV P     I       +  +    P + K   GG   G+ V+   + +      
Sbjct: 160 IAAGVPVVPGTDAPITSLHEAHEFSNTYGFPIIFKAAYGGGGRGMRVVHSYEELEENYTR 219

Query: 153 DLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
              ++ +      L +E++++    +   ++GD   ++  +            K      
Sbjct: 220 AYSEALAAFGNGALFVEKFIEKPRHIEVQILGDQYGNILHLYERDCSIQRRHQK-----V 274

Query: 212 THVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
             + P A +   +   +   +    + +G       +FL D   +  +++E+N
Sbjct: 275 VEIAPAAHLDPQLRTRLTSDSVKLAKQVGYENAGTVEFLVDRHGKH-YFIEVN 326


>gi|315609092|ref|ZP_07884061.1| phosphoribosylglycinamide formyltransferase 2 [Prevotella buccae
           ATCC 33574]
 gi|315249162|gb|EFU29182.1| phosphoribosylglycinamide formyltransferase 2 [Prevotella buccae
           ATCC 33574]
          Length = 393

 Score = 74.4 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 41/246 (16%), Positives = 78/246 (31%), Gaps = 23/246 (9%)

Query: 33  VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGE---DGLVQAILELLEIPYTHSGILASAL 89
            S +D D ++  V+   +PD+    +     E   D       E   I    S    +  
Sbjct: 48  FSMLDGD-ALEAVVRKHRPDIIVPEIEAIRTERLFD------FEKAGIQVVPSARAVNYT 100

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVIKKD 147
              +          G+          F     +   I  P V+KPL   S  G   +  D
Sbjct: 101 MNRRAIRDLAAKELGLRTAKYFYAKTFDEFRKAADEIGFPCVVKPLMSSSGHGQSYVHSD 160

Query: 148 QSIPLDLLQSSSWNHGD--QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205
             +      +   + GD  +++IE+++D       +        T    P          
Sbjct: 161 GELEQAFRDAMEGSRGDVKEIIIEEFIDFDSEFTLLTVTQKQGPTLFCPPIGHIQ----- 215

Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                     P ++P +  K  + +A    +A+   G+   +F       +V + E++ +
Sbjct: 216 KGGDYRESWQPFRLPDEALKAAEDMARKVTEALTGCGLWGVEFFLSRQ-GEVIFSELSPR 274

Query: 266 P---GM 268
           P   GM
Sbjct: 275 PHDTGM 280


>gi|301784849|ref|XP_002927838.1| PREDICTED: pyruvate carboxylase, mitochondrial-like [Ailuropoda
           melanoleuca]
 gi|281346281|gb|EFB21865.1| hypothetical protein PANDA_017679 [Ailuropoda melanoleuca]
          Length = 1178

 Score = 74.4 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 31/233 (13%), Positives = 75/233 (32%), Gaps = 17/233 (7%)

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
            +  V      D      +G   E        +   + +            DK+ ++ + 
Sbjct: 101 DIIKVAKENNVDAVHPG-YGFLSERADFAQACQDAGVRFIGPSPEVVRKMGDKVEARAIA 159

Query: 101 SSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL---- 152
            + GVPV P     I       +  +    P + K   GG   G+ V+   + +      
Sbjct: 160 IAAGVPVVPGTDAPITSLHEAHEFSNTYGFPIIFKAAYGGGGRGMRVVHSYEELEENYNR 219

Query: 153 DLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
              ++ +      L +E++++    +   ++GD   ++  +            K      
Sbjct: 220 AYSEALAAFGNGALFVEKFIEKPRHIEVQILGDQYGNILHLYERDCSIQRRHQK-----V 274

Query: 212 THVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
             + P A +   +   +   +    + +G       +FL D   +  +++E+N
Sbjct: 275 VEIAPAAHLDPQLRTRLTSDSVKLAKQVGYENAGTVEFLVDRHGKH-YFIEVN 326


>gi|196038725|ref|ZP_03106033.1| carbamoyl-phosphate synthase, large subunit [Bacillus cereus
           NVH0597-99]
 gi|196030448|gb|EDX69047.1| carbamoyl-phosphate synthase, large subunit [Bacillus cereus
           NVH0597-99]
          Length = 1072

 Score = 74.4 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 50/314 (15%), Positives = 114/314 (36%), Gaps = 37/314 (11%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQIDVD---------------------RSVGLV 45
           G ++E + S   G     +L++ G+KV  ++ +                       V  +
Sbjct: 21  GQAAEFDYS---GTQACQSLKEEGYKVILVNSNPATIMTDTATADKVYIEPLTLEFVSRI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   +PD     L G  G +  V+     +LE   +    + + A   + D+   + ++ 
Sbjct: 78  IRKERPDAILPTLGGQTGLNMAVELAKSGVLEECGVEILGTKLSAIEQAEDRDLFRTLMQ 137

Query: 102 SCGVPVCPSILVNRFTMD--SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
               P  PS +++         + I  P +++P       G  +   ++ +   +     
Sbjct: 138 ELNEPTPPSEIIHNLDEAYGFVNEIGYPVIVRPAFTLGGTGGGICHNEEELIEIVTSGLK 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   Q L+E+ + G  E+   VM D++ +   I V   +       ++  +        
Sbjct: 198 HSPVTQCLLEKSIAGCKEIEYEVMRDSNDNA--IVVCNMENIDPVGVHTGDSIVVAPSQT 255

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278
           +    Y+ ++  +    +A+G  G        DP S + + +E+N  P ++  S     +
Sbjct: 256 LSDREYQMLRNTSLRIIRALGIEGGCNVQLALDPYSFQYYVIEVN--PRVSRSS--ALAS 311

Query: 279 AYAGYSFRELLLWM 292
              GY   +L   +
Sbjct: 312 KATGYPIAKLAAKI 325



 Score = 66.3 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 37/283 (13%), Positives = 100/283 (35%), Gaps = 39/283 (13%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ------ 69
           A+++AG++   I         D   S  L    L  +   +++     E  +VQ      
Sbjct: 580 AIKEAGYEAIIINNNPETVSTDFSISDKLYFEPLTIEDVMHIIDLEKPEGVIVQFGGQTA 639

Query: 70  ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHL 123
               A LE   +    + +     + D+ + +  ++  G+P             +     
Sbjct: 640 INLAAKLEAHGVKILGTSLEDLDRAEDRDKFEAALTKLGIPQPVGKTATTVEQAVAIAEE 699

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + ++ + + +   +  +   +    +LI++Y+ G E+    + 
Sbjct: 700 IGYPVLVRPSYVLGGRAMEIVYRQEELLHYMKNAVKVHADHPVLIDRYMVGKEIEVDAIS 759

Query: 184 DAS---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIG 239
           D     +      + ++  +S        +S  V P + +   + +++        + + 
Sbjct: 760 DGENVFIPGIMEHIERAGVHS-------GDSIGVYPPQSLSEKLKEQIIEHTIALGKGLN 812

Query: 240 CRGISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277
             G+    F+      +V+ +E+N       P ++ ++  P  
Sbjct: 813 IVGLLNIQFVVFK--DQVYVIEVNPRASRTVPFLSKITGVPMA 853


>gi|118465096|ref|YP_879630.1| pyruvate carboxylase [Mycobacterium avium 104]
 gi|118166383|gb|ABK67280.1| pyruvate carboxylase [Mycobacterium avium 104]
          Length = 1127

 Score = 74.4 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 44/248 (17%), Positives = 88/248 (35%), Gaps = 20/248 (8%)

Query: 28  DAGFKVS-QIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           + G  V   + VD  VG  LA    D  +   +G   E+  + A      I +       
Sbjct: 53  EEGHPVRAYLSVDEIVGTALA-CGADAIYPG-YGFLSENPDLAAACAAAGITFVGPSAEV 110

Query: 87  SALSMDKMRSKQVVSSCGVPV----CPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGII 142
             L+ DK R+     + G+PV     PS  V    + +   ++ P  +K + GG   G+ 
Sbjct: 111 LELTGDKSRAIAAARAAGLPVLASSPPSTSVQEL-LSAAETMTFPLFVKAVAGGGGRGMR 169

Query: 143 VIKKDQSIPLDLLQS-----SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKS 197
            +    ++   +  +     S++      L +  ++   +   ++ D   +V  +     
Sbjct: 170 RVTDPGALAEAIEAASREAESAFGDASVFLEQAVINPRHIEVQILADTHGNVMHLYE--- 226

Query: 198 DFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256
                 ++        + PA  +   + + +   A    ++IG       +FL D     
Sbjct: 227 --RDCSVQRRHQKVIEIAPAPNLDPALRERICADAVAFARSIGYTCAGTVEFLLDERGNH 284

Query: 257 VFWLEINV 264
           VF  E+N 
Sbjct: 285 VFI-EMNP 291


>gi|260907306|ref|ZP_05915628.1| Carbamoyl-phosphate synthase L chain ATP-binding protein
           [Brevibacterium linens BL2]
          Length = 579

 Score = 74.4 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 35/222 (15%), Positives = 78/222 (35%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+    A +E   + +            DK+ ++Q+    G P+ P I  
Sbjct: 76  AVHPGYGFLSENAEFAAAVEDAGLIWIGPTADTITALGDKVTARQLAQKVGAPLAPGIDR 135

Query: 112 -LVNRFTMDS-QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS-----SSWNHGD 164
            L +   +++       P +IK   GG   G+ ++     +      +      ++    
Sbjct: 136 PLKDAGEVEAFAAEHGLPIIIKAAHGGGGRGMKIVHDLAEVADAFESATREAVEAFGR-S 194

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
           +  +E++++    +   ++GD    V  +            +  +       PA  +  D
Sbjct: 195 ECFVEKFLERPRHVEVQIVGDGRGRVVAV-----GDRDCSAQRRNQKLIEEAPAPGLSAD 249

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             + + R A      +  RG    +FL       + +LE+N 
Sbjct: 250 QRERLHRSAEAICADVDYRGAGTVEFLL-AADSTMTFLEVNT 290


>gi|23336173|ref|ZP_00121399.1| COG4770: Acetyl/propionyl-CoA carboxylase, alpha subunit
           [Bifidobacterium longum DJO10A]
 gi|189440493|ref|YP_001955574.1| acetyl/propionyl-CoA carboxylase subunit alpha [Bifidobacterium
           longum DJO10A]
 gi|239620958|ref|ZP_04663989.1| acetyl-/propionyl-coenzyme A carboxylase alpha chain protein
           [Bifidobacterium longum subsp. infantis CCUG 52486]
 gi|189428928|gb|ACD99076.1| Acetyl/propionyl-CoA carboxylase alpha subunit [Bifidobacterium
           longum DJO10A]
 gi|239516059|gb|EEQ55926.1| acetyl-/propionyl-coenzyme A carboxylase alpha chain protein
           [Bifidobacterium longum subsp. infantis CCUG 52486]
          Length = 654

 Score = 74.4 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 38/199 (19%), Positives = 72/199 (36%), Gaps = 12/199 (6%)

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPY 128
           E     +      A     DK+ +++V     VP  P     +   R  +D  H    P 
Sbjct: 99  EDAGAIWVGPHHTALVDLGDKITARRVALRAKVPPVPGLSEPVTDVRTLLDFAHTHGYPI 158

Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD--QLLIEQYVD-GIELTCGVMGDA 185
           ++K   GG   GI V+  D+ +    +   +   GD  +  IE++VD    +      D+
Sbjct: 159 MMKRTDGGGGHGITVVHDDEELRRFYMNHDALQGGDLKEYFIEKFVDKARHVETQSGRDS 218

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
             + T  +           K             +  +I   ++  +      +G  G+  
Sbjct: 219 HGNFTVYSTRDCSLQRRNQK----LVEEAPAPFLSEEIISTLEEYSRRLFTTVGYVGLGT 274

Query: 246 SDFLFDPLSRKVFWLEINV 264
            +F+  P + KV++LE+N 
Sbjct: 275 CEFMVTP-NGKVYFLEVNP 292


>gi|257079157|ref|ZP_05573518.1| carbamoyl-phosphate synthase [Enterococcus faecalis JH1]
 gi|294779374|ref|ZP_06744775.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecalis
           PC1.1]
 gi|256987187|gb|EEU74489.1| carbamoyl-phosphate synthase [Enterococcus faecalis JH1]
 gi|294453503|gb|EFG21904.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecalis
           PC1.1]
          Length = 1060

 Score = 74.4 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 50/296 (16%), Positives = 108/296 (36%), Gaps = 34/296 (11%)

Query: 25  ALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNVLHGNFG 63
           AL++ G++V  ++        D+ +                +L   +PD     L G  G
Sbjct: 36  ALKEEGYEVVLVNSNPATIMTDKEIADHVYIEPITLEFVSRILRKERPDALLPTLGGQTG 95

Query: 64  EDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFT 117
            +  ++     IL+ L +    + + A   + D+   KQ++     P+  S +VN     
Sbjct: 96  LNMAMELSESGILDELNVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIVNTVEQA 155

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IE 176
           +     I  P +++P       G  +   ++ +          +   Q LIE+ + G  E
Sbjct: 156 VAFAKQIGYPIIVRPAFTLGGTGGGMCDTEEELRQIAENGLKLSPVTQCLIEKSIAGFKE 215

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +   VM D++ +   I V   + +     ++  +        +    Y+ ++  +    +
Sbjct: 216 IEYEVMRDSADNA--IVVCNMENFDPVGIHTGDSIVFAPSQTLSDYEYQMLRDASLKIIR 273

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           A+   G        DP S   + +E+N  P ++  S     +   GY   +L   +
Sbjct: 274 ALKIEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAKI 325



 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/221 (11%), Positives = 71/221 (32%), Gaps = 13/221 (5%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--QHLISPPYVIKPL 133
            +    + I     + ++   +Q +    +P  P                I  P +++P 
Sbjct: 650 GVKILGTTIEDLDRAENRDLFEQALQELAIPQPPGDTATSAEEAVVIADRIGYPVLVRPS 709

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
                  + +++  + +   +  +   +    +L++ Y+ G E     + D    +    
Sbjct: 710 YVLGGRAMEIVENQKDLEDYMRHAVKASPEHPVLVDSYLLGQECEVDAICDGETVLIPGI 769

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
           +   +           +S  V P + +  +I   +          + C G+    F+   
Sbjct: 770 MEHIERAGVHS----GDSMAVYPPQYLSQEIQATIADYTKKLALGLNCVGMMNIQFVIHE 825

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
              +V+ +E+N +   T     P ++   G    ++    +
Sbjct: 826 --NRVYVIEVNPRASRT----VPFLSKITGIPMAQVATKAI 860


>gi|237756464|ref|ZP_04585000.1| carbamoyl-phosphate synthase large chain, N- section
           [Sulfurihydrogenibium yellowstonense SS-5]
 gi|237691378|gb|EEP60450.1| carbamoyl-phosphate synthase large chain, N- section
           [Sulfurihydrogenibium yellowstonense SS-5]
          Length = 558

 Score = 74.4 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 49/289 (16%), Positives = 103/289 (35%), Gaps = 38/289 (13%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQID---------------------VDRSVGLV 45
           G ++E + S   G   A AL++ G++V  ++                     +   +  +
Sbjct: 21  GQAAEFDYS---GTQGAKALKEEGYRVILVNSNPATIMTDPNIADKTYIEPLITPVLEKI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   +PD     L G    +  V    + IL+   +    +       + D+   K+ + 
Sbjct: 78  IEKERPDAILPTLGGQTALNLAVDLYEKGILDKYNVELIGAKYEVIKKAEDRDLFKKAME 137

Query: 102 SCGVPVCPSILVNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
           + G+ +  S +V       +    I  P +I+P       G  +          +     
Sbjct: 138 NIGLSMPKSAVVKSIAEAEEVIDWIGFPVIIRPSFTLGGTGGSIAYNRDEFYPKVKAGLD 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
            +   ++L+E+ V G  E    VM D + + V   ++   D           +S  V PA
Sbjct: 198 ASPIHEVLLEESVIGWKEFEMEVMRDKNDNCVIICSIENLDPMGVHT----GDSITVAPA 253

Query: 218 -KIPLDIYKEVQRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
             +    Y+ ++  +    + IG   G S   F  +P + + + +E+N 
Sbjct: 254 ITLSDREYQILRNYSIAVMREIGVETGGSNVQFSQNPKTGEFYVIEMNP 302


>gi|68271223|gb|AAY89102.1| pyruvate carboxylase [Bacillus methanolicus MGA3]
          Length = 1147

 Score = 74.4 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 28/221 (12%), Positives = 76/221 (34%), Gaps = 20/221 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+           I +         +  DK++++       +PV P    
Sbjct: 81  AIHPGYGFLSENIEFAKRCAEEGIIFIGPEAKHLDMFGDKVKARTQAQLAEIPVIPGSDG 140

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK----DQSIPLDLLQSSSWNHGDQ 165
            +      +        P +IK   GG   G+ +++      ++      ++ +    DQ
Sbjct: 141 PVKGLEEVIQFGKTYGFPIIIKAALGGGGRGMRIVRSLEEVREAYERAKSEAKAAFGSDQ 200

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDI 223
           + +E++++    +   ++GD   ++  +           ++        V P   I  ++
Sbjct: 201 VYVEKFIEKPKHIEVQIIGDEHGNIVHLYE-----RDCSVQRRHQKVVEVAPCVSISSEL 255

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +   A    + +        +FL      + +++E+N 
Sbjct: 256 RERICEAAVRLMKNVNYVNAGTVEFLL--SGDEFYFIEVNP 294


>gi|68271225|gb|AAY89103.1| pyruvate carboxylase [Bacillus methanolicus]
          Length = 1147

 Score = 74.4 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 28/221 (12%), Positives = 76/221 (34%), Gaps = 20/221 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+           I +         +  DK++++       +PV P    
Sbjct: 81  AIHPGYGFLSENIEFAKRCAEEGIIFIGPEAKHLDMFGDKVKARTQAQLAEIPVIPGSDG 140

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK----DQSIPLDLLQSSSWNHGDQ 165
            +      +        P +IK   GG   G+ +++      ++      ++ +    DQ
Sbjct: 141 PVKGLEEVIQFGKTYGFPIIIKAALGGGGRGMRIVRSLEEVREAYERAKSEAKAAFGSDQ 200

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDI 223
           + +E++++    +   ++GD   ++  +           ++        V P   I  ++
Sbjct: 201 VYVEKFIEKPKHIEVQIIGDEHGNIVHLYE-----RDCSVQRRHQKVVEVAPCVSISSEL 255

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +   A    + +        +FL      + +++E+N 
Sbjct: 256 RERICEAAVRLMKNVNYVNAGTVEFLL--SGDEFYFIEVNP 294


>gi|52308343|gb|AAU38843.1| CarB protein [Mannheimia succiniciproducens MBEL55E]
          Length = 1100

 Score = 74.4 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 50/278 (17%), Positives = 101/278 (36%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +              DV        ++V  ++   +PD    
Sbjct: 59  SGAQACKALREEGYKVVLVNSNPATIMTDPNMADVTYIEPIHWQTVEKIIEKERPDAILP 118

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      +L+   +    +   A   + D+ R K+ ++  G+    S +
Sbjct: 119 TMGGQTALNCALDLSKNGVLKKYGVELIGATEDAIDKAEDRGRFKEAMAKIGLNTPKSFV 178

Query: 113 VNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            + F     +Q  +  P +I+P       G  +            +    +   +LLIEQ
Sbjct: 179 CHSFDEAWKAQEEVGFPTLIRPSFTMGGSGGGIAYNRDEFQAICERGFEASPTHELLIEQ 238

Query: 171 YVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            V G  E    V+ D + + +   ++   D           +S  V PA+ +    Y+ +
Sbjct: 239 SVLGWKEYEMEVVRDKADNCIIVCSIENFDPMGVHT----GDSITVAPAQTLTDKEYQIM 294

Query: 228 QRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 295 RNASLAVLREIGVDTGGSNVQFAINPENGEMIVIEMNP 332



 Score = 62.8 bits (152), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 35/262 (13%), Positives = 97/262 (37%), Gaps = 27/262 (10%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH-----GNFGEDG---- 66
           AL ++GF+   +         D D S  L    L  +    ++H     G     G    
Sbjct: 612 ALRESGFETIMVNCNPETVSTDFDTSDRLYFEPLTLEDVLEIIHVEKPWGVIVHYGGQTP 671

Query: 67  -LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHL 123
             +   L    +    +   +   + D+ R ++++    +    +      +  +   + 
Sbjct: 672 LKLANALHANGVNIIGTSADSIDAAEDRERFQKILHDLNLKQPANRTARNTQEAVGLANE 731

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVM 182
           +  P V++P        + ++  D+ +   + ++ S ++   +L++ ++ + IE+    +
Sbjct: 732 VGYPLVVRPSYVLGGRAMQIVYNDEELNRYMREAVSVSNDSPILLDHFLNNAIEVDVDCI 791

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  ++  + P  + ++I  E++R      +A+   G
Sbjct: 792 CDGEQVIIGGIMQHIEQAGI---HSGDSACSLPPYSLSMEIQDEIRRQTAAMARALNVVG 848

Query: 243 ISRSDFLFDPLSRKVFWLEINV 264
           +    F     +  ++ LE+N 
Sbjct: 849 LMNVQFAV--QNDVIYVLEVNP 868


>gi|213966382|ref|ZP_03394562.1| acetyl-/propionyl-coenzyme A carboxylase alpha chain
           [Corynebacterium amycolatum SK46]
 gi|213950979|gb|EEB62381.1| acetyl-/propionyl-coenzyme A carboxylase alpha chain
           [Corynebacterium amycolatum SK46]
          Length = 595

 Score = 74.4 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 76/221 (34%), Gaps = 17/221 (7%)

Query: 56  NVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
           N +H  +G   E+G     +E   + +      +     DK+ ++ +      P+ P   
Sbjct: 87  NAIHPGYGFLSENGDFAEAVENAGLIWIGPSPESIRALGDKVTARHIALKADAPMAPGTK 146

Query: 113 VNRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQS----IPLDLLQSSSWNHGD 164
                 D           P  IK   GG   G+ V  K +           ++ +     
Sbjct: 147 EPVKDADEVVAFAKEHGLPIAIKAAFGGGGRGMKVAHKMEEVADLYESATREAVAAFGRG 206

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           +  +E+Y+D    + C V+ D   +V    V  +   S + ++  L         +  + 
Sbjct: 207 ECFVERYLDKARHVECQVLADKHGNVV---VASTRDCSLQRRFQKL-VEEAPAPFLTPEQ 262

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +++ A    +  G  G    ++L       + +LE+N 
Sbjct: 263 DERLRQSAKDICREAGYYGAGTVEYLV-GADGLINFLEVNT 302


>gi|77407252|ref|ZP_00784209.1| carbamoyl-phosphate synthase, large subunit [Streptococcus
           agalactiae H36B]
 gi|77174139|gb|EAO77051.1| carbamoyl-phosphate synthase, large subunit [Streptococcus
           agalactiae H36B]
          Length = 353

 Score = 74.4 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 29/214 (13%), Positives = 77/214 (35%), Gaps = 14/214 (6%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           L    +    + +     + ++ + +  + +  +P  P          +++   I  P +
Sbjct: 58  LNKAGVKILGTQLEDLDRAENRKQFEATLQALNIPQPPGFTATTEEEAVNAAQKIGYPVL 117

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           ++P        + +++ ++ +   +  +   +    +LI+ Y+ G E     + D     
Sbjct: 118 VRPSYVLGGRAMKIVENEEDLRHYMTTAVKASPDHPVLIDAYLIGKECEVDAISDGQ--- 174

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
             I +P    +       S +S  V P + +   I + +          + C G+    F
Sbjct: 175 -NILIPGIMEHIERAGVHSGDSMAVYPPQTLSETIIETIVDYTKRLAIGLNCIGMMNIQF 233

Query: 249 LFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277
           +     +KV+ +E+N       P ++ V+  P  
Sbjct: 234 VI--KDQKVYVIEVNPRASRTLPFLSKVTHIPMA 265


>gi|282899734|ref|ZP_06307697.1| Carbamoyl-phosphate synthase, large subunit, glutamine-dependent
           [Cylindrospermopsis raciborskii CS-505]
 gi|281195349|gb|EFA70283.1| Carbamoyl-phosphate synthase, large subunit, glutamine-dependent
           [Cylindrospermopsis raciborskii CS-505]
          Length = 1083

 Score = 74.4 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 60/279 (21%), Positives = 102/279 (36%), Gaps = 36/279 (12%)

Query: 18  SGKACASALEDAGFKVSQID------------VDRS---------VGLVLAHLKPDLAFN 56
           SG     AL + GF+V  ++             DR+         V  V+A  +PD    
Sbjct: 29  SGTQACKALREEGFEVVLVNSNPATIMTDPETADRTYIEPLTPEMVAKVIAKERPDALLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  V      +LE   +    + + A   + D+      +   GV VCPS  
Sbjct: 89  TMGGQTALNIAVALAKNGVLEEYNVELIGAKLPAIEKAEDRKLFNDAMEKIGVNVCPSGT 148

Query: 113 ---VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
              +      +Q + S P +I+P       G  +    +   L        +   Q+LI+
Sbjct: 149 ASSLEESKAIAQRIGSYPLIIRPAFTMGGTGGGIAYNKEEFELMAQVGIDASPVSQILID 208

Query: 170 QYVDG-IELTCGVMGD-ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKE 226
           Q + G  E    VM D A   V   ++   D           +S  V PA+ +    Y+ 
Sbjct: 209 QSLLGWKEYELEVMRDLADNVVIICSIENLDPMGIHT----GDSITVAPAQTLTDKEYQR 264

Query: 227 VQRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           ++ +A    + IG   G S   F  +P++  V  +E+N 
Sbjct: 265 LRDMAIKIIREIGVETGGSNIQFAVNPVNGDVVVIEMNP 303



 Score = 47.8 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/215 (13%), Positives = 77/215 (35%), Gaps = 14/215 (6%)

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGSS 138
            +   +  ++ ++ R ++++    +    + +   +   +     I  P V++P      
Sbjct: 668 GTSPDSIDMAENRERFEKILQELKIAQPANGIARSYEDALIVAKRIGYPVVVRPSYVLGG 727

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKS 197
             + ++  D  +   +  +        +LI+++++  IE+    + D    V    + + 
Sbjct: 728 RAMEIVYSDSELERYMSFAVQVEPEHPILIDKFLENAIEVDVDAIADHQGRVVIGGIME- 786

Query: 198 DFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR- 255
             +  +    S +S   LP   +   +  +++       +A+   G+    F     S  
Sbjct: 787 --HIEQAGIHSGDSACSLPSISLSPAVLNQIRTWTVELAKALSVVGLMNIQFAVVGASSY 844

Query: 256 --KVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
             +V+ LE N +   T     P ++   G     L
Sbjct: 845 SPQVYILEANPRASRT----VPFVSKATGVPLARL 875


>gi|116074268|ref|ZP_01471530.1| 5'-phosphoribosylglycinamide transformylase [Synechococcus sp.
           RS9916]
 gi|116069573|gb|EAU75325.1| 5'-phosphoribosylglycinamide transformylase [Synechococcus sp.
           RS9916]
          Length = 388

 Score = 74.4 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 41/240 (17%), Positives = 92/240 (38%), Gaps = 16/240 (6%)

Query: 32  KVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSM 91
           +V  +     +  V+   +PD+    +     +   +QA LE   I        A+A++M
Sbjct: 50  EVFPMTDAAMLQDVVRRHRPDVVIPEIEALAVD--ALQA-LEDEGIQVI-PTARATAVTM 105

Query: 92  DKMRSKQVVSS-CGVPVCPSILVNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVIKKDQ 148
           ++ R + + +   G+                +   +  P V+KP+   S  G  V+K+ +
Sbjct: 106 NRDRIRDLAADELGLRTARFAYATNLEELKAAAAPLGFPVVVKPVMSSSGKGQSVVKRAE 165

Query: 149 SIPLDL--LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
            +        S +   G+++++E+++   EL   ++     D T +  P          Y
Sbjct: 166 ELDAAWSTAISGARGSGERVIVEEFLR-FELEITLLTIRQADGTTLFCPPIGHEQEGGDY 224

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
                    PA +     ++ Q +A    + +G  G+   +F       +V + E++ +P
Sbjct: 225 QCSW----QPAAMTDAQLEQAQAMARKVTENLGGVGLFGVEFFL--CGDEVVFSELSPRP 278


>gi|84494434|ref|ZP_00993553.1| pyruvate carboxylase [Janibacter sp. HTCC2649]
 gi|84383927|gb|EAP99807.1| pyruvate carboxylase [Janibacter sp. HTCC2649]
          Length = 1132

 Score = 74.4 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/247 (13%), Positives = 77/247 (31%), Gaps = 12/247 (4%)

Query: 28  DAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87
           + G  V       ++  V      D  +   +G   E+ L+        I +        
Sbjct: 53  EEGHPVRAYLDHENIVRVAVECGADAIYPG-YGFLSENPLLAEEAAAHGITFIGPPPEVL 111

Query: 88  ALSMDKMRSKQVVSSCGVPVC---PSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
            L+ +K ++       G+P      +         +    S P  +K + GG   G+  +
Sbjct: 112 HLTGNKSKAIAAAREAGLPTLHGSEAGTDLDVLEAAAADFSFPLFVKAVSGGGGRGMRRV 171

Query: 145 KKDQSIPLDLLQS-----SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI-AVPKSD 198
                +   L  +     +++      + E  +D   +   ++ D +  + +   +    
Sbjct: 172 DDAAHLRDALEAAQREADAAFGDPTLYIEEAVIDPRHIEVQILSDGTGTIDDDKGILHLF 231

Query: 199 FYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
                ++        + PA  +     +++   A    + IG       +FL     R V
Sbjct: 232 ERDCSVQRRHQKVVEIAPAPNLDPATREQMCADAVRFARGIGYVNAGTVEFLLGKDGRYV 291

Query: 258 FWLEINV 264
           F  E+N 
Sbjct: 292 FI-EMNP 297


>gi|315150764|gb|EFT94780.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecalis
           TX0012]
          Length = 1066

 Score = 74.4 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 50/296 (16%), Positives = 108/296 (36%), Gaps = 34/296 (11%)

Query: 25  ALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNVLHGNFG 63
           AL++ G++V  ++        D+ +                +L   +PD     L G  G
Sbjct: 42  ALKEEGYEVVLVNSNPATIMTDKEIADHVYIEPITLEFVSRILRKERPDALLPTLGGQTG 101

Query: 64  EDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFT 117
            +  ++     IL+ L +    + + A   + D+   KQ++     P+  S +VN     
Sbjct: 102 LNMAMELSESGILDELNVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIVNTVEQA 161

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IE 176
           +     I  P +++P       G  +   ++ +          +   Q LIE+ + G  E
Sbjct: 162 VAFAKQIGYPIIVRPAFTLGGTGGGMCDTEEELRQIAENGLKLSPVTQCLIEKSIAGFKE 221

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +   VM D++ +   I V   + +     ++  +        +    Y+ ++  +    +
Sbjct: 222 IEYEVMRDSADNA--IVVCNMENFDPVGIHTGDSIVFAPSQTLSDYEYQMLRDASLKIIR 279

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           A+   G        DP S   + +E+N  P ++  S     +   GY   +L   +
Sbjct: 280 ALKIEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAKI 331



 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/221 (11%), Positives = 71/221 (32%), Gaps = 13/221 (5%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--QHLISPPYVIKPL 133
            +    + I     + ++   +Q +    +P  P                I  P +++P 
Sbjct: 656 GVKILGTTIEDLDRAENRDLFEQALQELAIPQPPGDTATSAEEAVVIADRIGYPVLVRPS 715

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
                  + +++  + +   +  +   +    +L++ Y+ G E     + D    +    
Sbjct: 716 YVLGGRAMEIVENQKDLEDYMRHAVKASPEHPVLVDSYLLGQECEVDAICDGETVLIPGI 775

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
           +   +           +S  V P + +  +I   +          + C G+    F+   
Sbjct: 776 MEHIERAGVHS----GDSMAVYPPQYLSQEIQATIADYTKKLALGLNCVGMMNIQFVIHE 831

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
              +V+ +E+N +   T     P ++   G    ++    +
Sbjct: 832 --NRVYVIEVNPRASRT----VPFLSKITGIPMAQVATKAI 866


>gi|307269527|ref|ZP_07550866.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecalis
           TX4248]
 gi|306514147|gb|EFM82723.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecalis
           TX4248]
 gi|315147411|gb|EFT91427.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecalis
           TX4244]
          Length = 1066

 Score = 74.4 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 50/296 (16%), Positives = 108/296 (36%), Gaps = 34/296 (11%)

Query: 25  ALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNVLHGNFG 63
           AL++ G++V  ++        D+ +                +L   +PD     L G  G
Sbjct: 42  ALKEEGYEVVLVNSNPATIMTDKEIADHVYIEPITLEFVSRILRKERPDALLPTLGGQTG 101

Query: 64  EDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFT 117
            +  ++     IL+ L +    + + A   + D+   KQ++     P+  S +VN     
Sbjct: 102 LNMAMELSESGILDELNVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIVNTVEQA 161

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IE 176
           +     I  P +++P       G  +   ++ +          +   Q LIE+ + G  E
Sbjct: 162 VAFAKQIGYPIIVRPAFTLGGTGGGMCDTEEELRQIAENGLKLSPVTQCLIEKSIAGFKE 221

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +   VM D++ +   I V   + +     ++  +        +    Y+ ++  +    +
Sbjct: 222 IEYEVMRDSADNA--IVVCNMENFDPVGIHTGDSIVFAPSQTLSDYEYQMLRDASLKIIR 279

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           A+   G        DP S   + +E+N  P ++  S     +   GY   +L   +
Sbjct: 280 ALKIEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAKI 331



 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/221 (11%), Positives = 71/221 (32%), Gaps = 13/221 (5%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--QHLISPPYVIKPL 133
            +    + I     + ++   +Q +    +P  P                I  P +++P 
Sbjct: 656 GVKILGTTIEDLDRAENRDLFEQALQELAIPQPPGDTATSAEEAVVIADRIGYPVLVRPS 715

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
                  + +++  + +   +  +   +    +L++ Y+ G E     + D    +    
Sbjct: 716 YVLGGRAMEIVENQKDLEDYMRHAVKASPEHPVLVDSYLLGQECEVDAICDGETVLIPGI 775

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
           +   +           +S  V P + +  +I   +          + C G+    F+   
Sbjct: 776 MEHIERAGVHS----GDSMAVYPPQYLSQEIQATIADYTKKLALGLNCVGMMNIQFVIHE 831

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
              +V+ +E+N +   T     P ++   G    ++    +
Sbjct: 832 --NRVYVIEVNPRASRT----VPFLSKITGIPMAQVATKAI 866


>gi|319761724|ref|YP_004125661.1| acetyl-CoA carboxylase, biotin carboxylase [Alicycliphilus
           denitrificans BC]
 gi|317116285|gb|ADU98773.1| acetyl-CoA carboxylase, biotin carboxylase [Alicycliphilus
           denitrificans BC]
          Length = 447

 Score = 74.4 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 35/201 (17%), Positives = 71/201 (35%), Gaps = 18/201 (8%)

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ-----HLISPPYV 129
             + +            DK+ +KQ + + GVP  P         +SQ       I  P +
Sbjct: 98  AGLVFIGPSAEVMRTMGDKVCAKQAMIAAGVPCVPGSPEALGDDESQIKALAAEIGYPVI 157

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGDQLLIEQY-VDGIELTCGVMGD 184
           IK   GG   G+ V++ + ++   +     ++ +      + +E+Y +    +   V+ D
Sbjct: 158 IKAAGGGGGRGMRVVESEDALLPAIAMTRAEADAAFRNAAVYMEKYLLAPRHIEIQVLAD 217

Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGI 243
           A      +            K          PA  +      E+      A + +G  G 
Sbjct: 218 AHGKAVWLGERDCSMQRRHQK-----VIEESPAPGLDAAAVAEIGERCARACEQMGYVGA 272

Query: 244 SRSDFLFDPLSRKVFWLEINV 264
              +FL++    + F++E+N 
Sbjct: 273 GTFEFLYEK--GQFFFIEMNT 291


>gi|296393717|ref|YP_003658601.1| pyruvate carboxylase [Segniliparus rotundus DSM 44985]
 gi|296180864|gb|ADG97770.1| pyruvate carboxylase [Segniliparus rotundus DSM 44985]
          Length = 1127

 Score = 74.4 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 46/247 (18%), Positives = 88/247 (35%), Gaps = 18/247 (7%)

Query: 28  DAGFKVS-QIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           + G  V   +DVD+ V         D  +   +G   E+  + A      I +       
Sbjct: 53  EVGHPVRAYLDVDQ-VVATAKRCGADAIYPG-YGFLSENPRLAAACAEAGIAFIGPSAEI 110

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD---SQHLISPPYVIKPLKGGSSLGIIV 143
             L+ DK R+       G+P   S+  +    +   +   ++ P  +K + GG   G+  
Sbjct: 111 LDLAGDKSRAIAAAREAGLPTLASVPPSCDVDEILAASRSMTFPVFVKAVAGGGGRGMRR 170

Query: 144 IKKDQSIPLDLLQS-----SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD 198
           +   Q +   +L +     +++  G   L +  V+   +   ++ D   DV         
Sbjct: 171 VADPQELREAVLAASREAEAAFGDGAVFLEQAVVNPRHIEVQILADWHGDVV-----HLF 225

Query: 199 FYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
                L+        + PA  +   + +++   A    + IG R     +FL D   R V
Sbjct: 226 ERDCSLQRRHQKVIELAPAPNLDPQLREKICADAVAFARHIGYRCAGTVEFLVDEQGRHV 285

Query: 258 FWLEINV 264
           F  E+N 
Sbjct: 286 FI-EMNP 291


>gi|317046861|ref|YP_004114509.1| carbamoyl-phosphate synthase large subunit [Pantoea sp. At-9b]
 gi|316948478|gb|ADU67953.1| carbamoyl-phosphate synthase, large subunit [Pantoea sp. At-9b]
          Length = 1074

 Score = 74.4 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 44/278 (15%), Positives = 98/278 (35%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D +              V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +    Q +LE   +    +   A   + D+ R    + S G+    S +
Sbjct: 89  TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKSIGLDTARSGI 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     +     +  P +I+P       G  +    +       +    +  ++LLI++
Sbjct: 149 AHTMEEALAVAEDVGFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTNELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + +   +   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIEN----FDAMGIHTGDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P   ++  +E+N 
Sbjct: 265 RNASLAVLREIGVETGGSNVQFSVNPKDGRLIVIEMNP 302



 Score = 60.9 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/197 (15%), Positives = 74/197 (37%), Gaps = 10/197 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL--ISPPYV 129
           LE   +P   +   A   + D+ R +Q V    +    +  V+      +    I  P V
Sbjct: 654 LEAAGVPVIGTSPDAIDRAEDRERFQQAVERLNLKQPANATVSTLEQAVEKAVGIGYPLV 713

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  +  +      + S ++   +L+++++ D +E+    + D    
Sbjct: 714 VRPSYVLGGRAMEIVYDEIDLKRYFQTAVSVSNDAPVLLDRFLDDAVEVDVDAICDGERV 773

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           +    +   +    +    S +S   LPA  +  +I   +++        +  RG+    
Sbjct: 774 LIGGIMEHIE----QAGVHSGDSACSLPAYTLNAEIQDVMRQQVEKLAFELNVRGLMNVQ 829

Query: 248 FLFDPLSRKVFWLEINV 264
           F       +V+ +E+N 
Sbjct: 830 FAV--KDNEVYLIEVNP 844


>gi|300768273|ref|ZP_07078178.1| pyruvate carboxylase [Lactobacillus plantarum subsp. plantarum ATCC
           14917]
 gi|300494337|gb|EFK29500.1| pyruvate carboxylase [Lactobacillus plantarum subsp. plantarum ATCC
           14917]
          Length = 1143

 Score = 74.4 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/245 (13%), Positives = 91/245 (37%), Gaps = 25/245 (10%)

Query: 33  VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASAL 89
            + +D+   +  +      D     +H  +G   E+      +    + +         +
Sbjct: 58  AAYLDI-EDIIRIAKENHVD----AIHPGYGFLSENATFARRIAEEGMTFVGPKPEHLEM 112

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI----SPPYVIKPLKGGSSLGIIVIK 145
             DK+ +K+V    GV   PS L    +++           P +IK   GG   G+ ++ 
Sbjct: 113 FGDKITAKRVARDAGVQTIPSTLHPVTSLNEALQFTQQYGYPIMIKAAMGGGGRGMRIVH 172

Query: 146 KDQSIPLDLLQSSSWNH----GDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFY 200
           +   +     ++ S        D++ +E+++ +   +   ++ DA  +V           
Sbjct: 173 EASELQEAFDRARSEAMQSFGDDEIYLEKFIANPKHIEVQILADAHGNVM-----HLFER 227

Query: 201 SYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
              ++  +       PA  +P+++ +++   A    +++     +  +FL      + ++
Sbjct: 228 DCSVQRRNQKVIEFAPAVALPIELRQKICNAAVDLMKSVHYLNAATVEFLV--EGDQFYF 285

Query: 260 LEINV 264
           +E+N 
Sbjct: 286 MEVNP 290


>gi|119485029|ref|ZP_01619414.1| Carbamoyl-phosphate synthase, large subunit, glutamine-dependent
           [Lyngbya sp. PCC 8106]
 gi|119457257|gb|EAW38382.1| Carbamoyl-phosphate synthase, large subunit, glutamine-dependent
           [Lyngbya sp. PCC 8106]
          Length = 1079

 Score = 74.4 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 56/279 (20%), Positives = 103/279 (36%), Gaps = 36/279 (12%)

Query: 18  SGKACASALEDAGFKVSQID---------------------VDRSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++                     V   V  V+   +PD    
Sbjct: 29  SGTQACKALREEGYEVVLVNSNPATIMTDPETAERTYIEPLVPEIVEKVIEKERPDALLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  V      +LE   +    + + A  ++ D+   KQ +   GV  CPS +
Sbjct: 89  TMGGQTALNLAVALAKNGVLEKYGVELIGAKLEAIEMAEDRQLFKQAMERIGVACCPSGI 148

Query: 113 VNRFTMD---SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
           V+        +Q + S P +I+P       G  +    +            +   Q+L+E
Sbjct: 149 VSNMDEARTVAQQIGSYPLIIRPAFTMGGTGGGIAYNQEEYEELASGGLDASPVSQILVE 208

Query: 170 QYVDG-IELTCGVMGDASLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPAK-IPLDIYKE 226
           Q + G  E    VM D + +V  I   ++ D           +S  V PA+ +    Y+ 
Sbjct: 209 QSLIGWKEFELEVMRDLADNVVIICSIENIDPMGVHT----GDSITVAPAQTLTDKEYQR 264

Query: 227 VQRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           ++  +    + IG   G S   F  +P++  +  +E+N 
Sbjct: 265 LRDASIKIIREIGVETGGSNIQFAINPVNGDMIVIEMNP 303



 Score = 58.6 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/230 (13%), Positives = 88/230 (38%), Gaps = 18/230 (7%)

Query: 68  VQAILELL-----EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDS 120
           +Q  LE       ++    +   +   + D+ R ++++    +    + +   F   +  
Sbjct: 652 LQKYLEANAEKNPDLKIWGTSPDSIDAAEDRERFEKILRQLNIQQAENGMARNFEQSLQI 711

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTC 179
              I  P V++P        + ++  D+ +   ++ +        +L++++++  IE+  
Sbjct: 712 ARRIGYPVVVRPSYVLGGRAMEIVYSDEDLERYMMFAVQIEPDHPILVDKFLENAIEVDV 771

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAI 238
             + D + +V    + +   +  +    S +S   +P + +P    + ++R      +A+
Sbjct: 772 DAIADQTGEVVIGGIME---HIEQAGVHSGDSACSIPYQTLPKTAVETIRRQTIELAKAL 828

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
              G+    F       +V+ LE N +   T     P ++   G    ++
Sbjct: 829 KVVGLMNIQFAV--QGEQVYILEANPRASRT----VPFVSKAIGIPLAKM 872


>gi|28378755|ref|NP_785647.1| pyruvate carboxylase [Lactobacillus plantarum WCFS1]
 gi|308180947|ref|YP_003925075.1| pyruvate carboxylase [Lactobacillus plantarum subsp. plantarum
           ST-III]
 gi|28271592|emb|CAD64497.1| pyruvate carboxylase [Lactobacillus plantarum WCFS1]
 gi|308046438|gb|ADN98981.1| pyruvate carboxylase [Lactobacillus plantarum subsp. plantarum
           ST-III]
          Length = 1144

 Score = 74.4 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/245 (13%), Positives = 91/245 (37%), Gaps = 25/245 (10%)

Query: 33  VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASAL 89
            + +D+   +  +      D     +H  +G   E+      +    + +         +
Sbjct: 59  AAYLDI-EDIIRIAKENHVD----AIHPGYGFLSENATFARRIAEEGMTFVGPKPEHLEM 113

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI----SPPYVIKPLKGGSSLGIIVIK 145
             DK+ +K+V    GV   PS L    +++           P +IK   GG   G+ ++ 
Sbjct: 114 FGDKITAKRVARDAGVQTIPSTLHPVTSLNEALQFTQQYGYPIMIKAAMGGGGRGMRIVH 173

Query: 146 KDQSIPLDLLQSSSWNH----GDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFY 200
           +   +     ++ S        D++ +E+++ +   +   ++ DA  +V           
Sbjct: 174 EASELQEAFDRARSEAMQSFGDDEIYLEKFIANPKHIEVQILADAHGNVM-----HLFER 228

Query: 201 SYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
              ++  +       PA  +P+++ +++   A    +++     +  +FL      + ++
Sbjct: 229 DCSVQRRNQKVIEFAPAVALPIELRQKICNAAVDLMKSVHYLNAATVEFLV--EGDQFYF 286

Query: 260 LEINV 264
           +E+N 
Sbjct: 287 MEVNP 291


>gi|328886259|emb|CCA59498.1| hypothetical protein SVEN_6212 [Streptomyces venezuelae ATCC 10712]
          Length = 418

 Score = 74.4 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 41/203 (20%), Positives = 74/203 (36%), Gaps = 20/203 (9%)

Query: 71  ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPY 128
           + E   +P    G +   L  DK   ++V  + GV    S  V               P 
Sbjct: 95  LAERYGLPGAGLGAVQ--LFRDKALLRKVTRAAGVANPASTEVEGPAEVGAFMAGHPGPV 152

Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD---------QLLIEQYVDGIELTC 179
           ++KP    +S+G  V+     I     +    + G          ++L+E+YV G E + 
Sbjct: 153 ILKPANRQASVGTRVLHSPAEIEAAWEECLRQDEGVYVPDRPVPLRMLVEEYVSGSEYSV 212

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
            ++ D  L V      KS F         +   HV+PA +P  +   ++       +A+G
Sbjct: 213 ELLVDDGLPVFGNVTAKSLF----PGPRPVEIGHVVPADVPDALAALLRERTARVLRAVG 268

Query: 240 CR-GISRSDFLFDPLSRKVFWLE 261
              GI   +++        + +E
Sbjct: 269 FGTGIVHCEWIVR--DGTPYLVE 289


>gi|322376823|ref|ZP_08051316.1| carbamoyl-phosphate synthase, large subunit [Streptococcus sp.
           M334]
 gi|321282630|gb|EFX59637.1| carbamoyl-phosphate synthase, large subunit [Streptococcus sp.
           M334]
          Length = 1058

 Score = 74.4 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 26/228 (11%), Positives = 79/228 (34%), Gaps = 19/228 (8%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYV 129
           L    +    + ++    + D+   +Q +    +P  P            +   I  P +
Sbjct: 646 LAKAGVTILGTQVVDLDRAEDRDLFEQALKDLDIPQPPGQTATNEEEAVLAARKIGFPVL 705

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS--- 186
           ++P        + +++ ++ +   +  +   +    +L++ Y+ G E     + D     
Sbjct: 706 VRPSYVLGGRAMEIVENEEDLRSYMRTAVKASPDHPVLVDSYIVGQECEVDAISDGENVL 765

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISR 245
           +      + ++  +S        +S  V P + +   + + +          + C G+  
Sbjct: 766 IPGIMEHIERAGVHS-------GDSMAVYPPQTLSQKVQETIADYTKRLAIGLNCLGMMN 818

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
             F+    + KV+ +E+N +   T     P ++        ++   ++
Sbjct: 819 IQFVI--KNEKVYVIEVNPRASRT----VPFLSKVTNIPMAQVATKLI 860



 Score = 69.8 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 54/302 (17%), Positives = 116/302 (38%), Gaps = 37/302 (12%)

Query: 20  KACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNVL 58
           +AC S L++ G++V  ++        D+ +                +L   +PD     L
Sbjct: 32  QACLS-LKEEGYEVILVNSNPATIMTDKEIADKVYIEPITLEFVTRILRKERPDALLPTL 90

Query: 59  HGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
            G  G +  ++     IL+ L +    + + A   + D+   KQ++     P+  S +VN
Sbjct: 91  GGQTGLNMAMELSKNGILDELGVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIVN 150

Query: 115 --RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                +     I  P +++P       G  +   ++ +          +   Q LIE+ +
Sbjct: 151 TVEEAVAFAATIGYPVIVRPAFTLGGTGGGMCANEEELREIAENGLKLSPVTQCLIERSI 210

Query: 173 DG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRL 230
            G  E+   VM D++ +   + V   + +   +   + +S  + PA+ +     + ++  
Sbjct: 211 AGFKEIEYEVMRDSADNA--LVVCNMENFD-PVGIHTGDSIVLAPAQTMSDYENQMLRDA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    +A+   G        DP S K + +E+N  P ++  S     +   GY   +L  
Sbjct: 268 SLSIIRALKIEGGCNVQLALDPHSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325


>gi|291519947|emb|CBK75168.1| Biotin carboxylase [Butyrivibrio fibrisolvens 16/4]
          Length = 331

 Score = 74.4 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 45/234 (19%), Positives = 86/234 (36%), Gaps = 30/234 (12%)

Query: 71  ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN-RFTMDSQHLISPPYV 129
           + + L++P+  S      +  DK+R K+     GVPV  +  ++  F+ +    +  P V
Sbjct: 85  LCKRLDLPFYVSDKAW-DIVNDKLRFKEECEKFGVPVPKNFKLDMDFSKEDLAAVEYPVV 143

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT---CGVMGDAS 186
           +KP  G SS+G+ +   ++ +      +   +   ++++E+Y  G E +   C V G   
Sbjct: 144 VKPADGCSSIGMHICYNEEELIAGYKDAYEKSDAKKVVLEKYYSGEETSLLFCYVDG--- 200

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC-RGISR 245
            +   I            K       +    ++      +         + +GC  G   
Sbjct: 201 -EPVCIETGDVLGDKKNGKPFLFGGNYTKHQEL---FEDKFVNSLKNLFKDLGCVAGTGS 256

Query: 246 SDFLFDPLSRKVFWLEINV-QPGM-TPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
             F+F         LE+N   PG  T  S F             +   M+E A+
Sbjct: 257 VQFIF--EGDDFAALEMNYRLPGAKTMSSDF-------------MCRRMIEYAT 295


>gi|254556959|ref|YP_003063376.1| pyruvate carboxylase [Lactobacillus plantarum JDM1]
 gi|254045886|gb|ACT62679.1| pyruvate carboxylase [Lactobacillus plantarum JDM1]
          Length = 1144

 Score = 74.4 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/245 (13%), Positives = 91/245 (37%), Gaps = 25/245 (10%)

Query: 33  VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASAL 89
            + +D+   +  +      D     +H  +G   E+      +    + +         +
Sbjct: 59  AAYLDI-EDIIRIAKENHVD----AIHPGYGFLSENATFARRIAEEGMTFVGPKPEHLEM 113

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI----SPPYVIKPLKGGSSLGIIVIK 145
             DK+ +K+V    GV   PS L    +++           P +IK   GG   G+ ++ 
Sbjct: 114 FGDKITAKRVARDAGVQTIPSTLHPVTSLNEALQFTQQYGYPIMIKAAMGGGGRGMRIVH 173

Query: 146 KDQSIPLDLLQSSSWNH----GDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFY 200
           +   +     ++ S        D++ +E+++ +   +   ++ DA  +V           
Sbjct: 174 EASELQEAFDRARSEAMQSFGDDEIYLEKFIANPKHIEVQILADAHGNVM-----HLFER 228

Query: 201 SYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
              ++  +       PA  +P+++ +++   A    +++     +  +FL      + ++
Sbjct: 229 DCSVQRRNQKVIEFAPAVALPIELRQKICNAAVDLMKSVHYLNAATVEFLV--EGDQFYF 286

Query: 260 LEINV 264
           +E+N 
Sbjct: 287 MEVNP 291


>gi|188585473|ref|YP_001917018.1| acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha ,
           biotin carboxylase [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179350160|gb|ACB84430.1| acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha ,
           biotin carboxylase [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 445

 Score = 74.4 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/220 (15%), Positives = 84/220 (38%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  FG   E+     +     I +            +K  +++++++  VPV P    
Sbjct: 76  AIHPGFGFLSENSRFADVCRKCNITFIGPRPEVIENMGNKSNARKLMANADVPVVPGSKK 135

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGDQ 165
            +   +  +     +  P +IK   GG   GI +I+    +   L     +++++   D 
Sbjct: 136 PLTDEQDAVQMADELGYPVMIKASAGGGGRGIRIIRSQAELLNALGTAKQEAATFFGDDT 195

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+Y++    +   ++ D   +V  +            K             +  ++ 
Sbjct: 196 MYMEKYLEKPRHVEIQILADKYGNVLHLGERDCSIQRRNQKVL----EEAPCPVMTEELR 251

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +++ + A  A + +G +     +FL D  +   +++E+N 
Sbjct: 252 EKMGQAAVRAAKYVGYQNAGTIEFLLDKHNN-FYFMEMNT 290


>gi|241204798|ref|YP_002975894.1| carbamoyl-phosphate synthase L chain ATP-binding [Rhizobium
           leguminosarum bv. trifolii WSM1325]
 gi|240858688|gb|ACS56355.1| Carbamoyl-phosphate synthase L chain ATP-binding [Rhizobium
           leguminosarum bv. trifolii WSM1325]
          Length = 673

 Score = 74.4 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 41/220 (18%), Positives = 77/220 (35%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E     A LE   I +      A     DK+ SK+  ++ GV   P  L 
Sbjct: 77  AVHPGYGFLSERASFCAELEKQGIIFIGPKPKAIMAMGDKIESKKFANAAGVSTVPGHLG 136

Query: 114 NRFTMDSQHL----ISPPYVIKPLKGGSSLGIIVIKKDQS----IPLDLLQSSSWNHGDQ 165
                    +    I  P +IK   GG   G+ +   +            ++ S    D+
Sbjct: 137 IIEDGAHAEVISGGIGYPVMIKASAGGGGKGMRIAWNEAEVRDGFERARSEAKSSFGDDR 196

Query: 166 LLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE++ V+   +   V+ DA  +V  +   +        K     +       +     
Sbjct: 197 VFIEKFVVEPRHIEIQVLADAHGNVVYLGERECSIQRRNQK----VAEEAPSPFLDEATR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K +   +    +A+  +     +F+ D   R  ++LE+N 
Sbjct: 253 KAMGEQSVALARAVDYQSAGTVEFIVD-RDRNFYFLEMNT 291


>gi|159185759|ref|NP_357130.2| 3-methylcrotonyl-CoA carboxylase alpha subunit [Agrobacterium
           tumefaciens str. C58]
 gi|159140893|gb|AAK89915.2| 3-methylcrotonyl-CoA carboxylase alpha subunit [Agrobacterium
           tumefaciens str. C58]
          Length = 663

 Score = 74.4 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 82/220 (37%), Gaps = 20/220 (9%)

Query: 58  LHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL-- 112
           +H  +G   E+           + +      A      K  +K ++++ GVP+ P     
Sbjct: 78  IHPGYGFLSENAGFAEACASAGLVFIGPPPEAIRAMGGKSEAKALMATAGVPIVPGYHGD 137

Query: 113 --VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQL 166
               +        I  P ++K   GG   G+ V+++      +L     ++ +    D++
Sbjct: 138 EQAEKRLASEADKIGYPVLLKASAGGGGKGMRVVRQKHDFAAELAGAKREALAAFGNDRM 197

Query: 167 LIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIY 224
           LIE+Y++    +   V  D   +   +            K          PA  +P D+ 
Sbjct: 198 LIEKYLERPRHVEVQVFADGHGNCVSLFERDCSIQRRHQK-----VIEEAPAPGLPDDLR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +   A  A +AI  RG    +FL DP     +++E+N 
Sbjct: 253 QRMYDAATAAARAIDYRGAGTIEFLLDPSG--FYFMEMNT 290


>gi|119718770|ref|YP_925735.1| carbamoyl-phosphate synthase L chain, ATP-binding [Nocardioides sp.
           JS614]
 gi|119539431|gb|ABL84048.1| Carbamoyl-phosphate synthase L chain, ATP-binding protein
           [Nocardioides sp. JS614]
          Length = 633

 Score = 74.4 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 38/217 (17%), Positives = 77/217 (35%), Gaps = 26/217 (11%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      +    + +      +      K+R+K+++ + GVPV      
Sbjct: 77  AIHPGYGFLSENAEFARAVIDAGLTWIGPAPESIEAMGSKIRAKEIMKAAGVPVLE---- 132

Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGI----IVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
                        P ++K   GG   G+     +      I     +++S      + +E
Sbjct: 133 ---APAEPAEADLPLLVKASAGGGGRGMRVVRTLADLPGEIEKARAEAASAFGDGTVFVE 189

Query: 170 QYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            YV+ G  +   V+G +                  L+          PA  +  ++   +
Sbjct: 190 PYVEHGRHVEVQVLGTSVF----------GDRDCSLQRRHQKVVEEAPAPGLSDEVRAAL 239

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              A  A +AI  R     +FL+DP + + ++LE+N 
Sbjct: 240 HDAARHAAEAIEYRSAGTVEFLYDPATERFWFLEMNT 276


>gi|15595691|ref|NP_249185.1| acetyl-CoA carboxylase biotin carboxylase subunit [Pseudomonas
           aeruginosa PAO1]
 gi|107099480|ref|ZP_01363398.1| hypothetical protein PaerPA_01000492 [Pseudomonas aeruginosa PACS2]
 gi|254237281|ref|ZP_04930604.1| hypothetical protein PACG_03345 [Pseudomonas aeruginosa C3719]
 gi|9946357|gb|AAG03883.1|AE004486_12 probable acyl-CoA carboxylase subunit [Pseudomonas aeruginosa PAO1]
 gi|126169212|gb|EAZ54723.1| hypothetical protein PACG_03345 [Pseudomonas aeruginosa C3719]
          Length = 458

 Score = 74.4 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 37/223 (16%), Positives = 82/223 (36%), Gaps = 25/223 (11%)

Query: 58  LHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
           +H  +G   E+      ++   + +            DK  +++   + GVPV P     
Sbjct: 81  IHPGYGFLSENPAFAEAVQAAGLVFVGPEAQTIRRMGDKAEARRTAMAAGVPVVPGSPGE 140

Query: 115 RFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGDQL 166
              +D+       +  P ++K   GG   GI +      +    P+   ++ +      +
Sbjct: 141 LGDLDAALACAEEVGYPLLVKASAGGGGRGIRIAHDADELRREFPIAQREAQAAFGSPAV 200

Query: 167 LIEQYVD-GIELTCGVMGDASLDVT----EIAVPKSDFYSYELKYSSLNSTHVLPAKIPL 221
            +E+++     +   ++GD    V     E ++ +     +E             A +  
Sbjct: 201 YLERFIRQARHIEVQILGDGERAVHLFERECSLQRRRQKVFE---------EAPSAALDG 251

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              + +   A    Q++G RG    ++LFD  S + F++E+N 
Sbjct: 252 AQRQALCESAVRLAQSLGYRGAGTLEYLFDAHSGEFFFIEMNT 294


>gi|121594399|ref|YP_986295.1| carbamoyl-phosphate synthase L chain, ATP-binding [Acidovorax sp.
           JS42]
 gi|120606479|gb|ABM42219.1| Carbamoyl-phosphate synthase L chain, ATP-binding protein
           [Acidovorax sp. JS42]
          Length = 682

 Score = 74.4 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 43/220 (19%), Positives = 79/220 (35%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+      +E   I +      A A   DK+ SK++ +  GV   P    
Sbjct: 77  AVHPGYGFLSENEAFAKRVEEEGIVFIGPKHAAIAAMGDKIASKKLANQAGVNTIPGYND 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
            I      ++    I  P +IK   GG   G+ V   D+           ++ +    D+
Sbjct: 137 PIAGPEAAVEIAKGIGYPVMIKASAGGGGKGLRVAFNDKEAFEGFASCQNEARNSFGDDR 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE++V +   +   V+GDA  +V  +   +        K             I     
Sbjct: 197 IFIEKFVQEPRHIEIQVLGDAHGNVIYLNERECSIQRRHQK----VIEEAPSPFISDATR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K +   A    +A+G +     +F      +  ++LE+N 
Sbjct: 253 KAMGEQAVALAKAVGYQSAGTVEF-VVGKDQDFYFLEMNT 291


>gi|330964452|gb|EGH64712.1| pyruvate carboxylase subunit A [Pseudomonas syringae pv. actinidiae
           str. M302091]
          Length = 471

 Score = 74.4 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 77/221 (34%), Gaps = 20/221 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            LH  +G   E+  +  I     I +            DK  +++ +   GVPV P    
Sbjct: 76  ALHPGYGFLSENAELADICAERGIKFIGPSAEVIRRMGDKTEARRSMIKAGVPVTPGTEG 135

Query: 114 NRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGD 164
           N   ++        I  P ++K   GG   GI      + +           + ++   +
Sbjct: 136 NVADIEEALLEGERIGYPVMLKATSGGGGRGIRRCNSREELEQAFPRVISEATKAFGSAE 195

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDI 223
             L +  V+   +   ++GD+  +V  +            K        + P  ++  + 
Sbjct: 196 VFLEKCIVNPKHIEAQILGDSFGNVVHLFERDCSIQRRNQKL-----IEIAPSPQLTPEQ 250

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              +  L+  A +A+G       +FL      +V+++E+N 
Sbjct: 251 RAYIGDLSVRAAKAVGYENAGTVEFLL--AEGEVYFMEMNT 289


>gi|207109423|ref|ZP_03243585.1| D-alanyl-alanine synthetase A [Helicobacter pylori HPKX_438_CA4C1]
          Length = 124

 Score = 74.4 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 18/91 (19%), Positives = 36/91 (39%), Gaps = 3/91 (3%)

Query: 185 ASLDVTEIAVP-KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
             L  + +  P K +F  ++ KY   +      A +   + ++++      +  +    I
Sbjct: 2   KDLCFSYVEEPNKQEFLDFKQKYLDFSRNKAPKASLSNALEEQLKENFKKLYNDLFSGAI 61

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274
            R DF    +  +V+  EIN  PG     +F
Sbjct: 62  IRCDFFV--IENEVYLNEINPIPGSLANYLF 90


>gi|187930100|ref|YP_001900587.1| acetyl-CoA carboxylase biotin carboxylase subunit [Ralstonia
           pickettii 12J]
 gi|187726990|gb|ACD28155.1| acetyl-CoA carboxylase, biotin carboxylase [Ralstonia pickettii
           12J]
          Length = 455

 Score = 74.4 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 36/222 (16%), Positives = 82/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +      +  L  DK+ +KQ +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAERVEQSGFTFIGPTPESIRLMGDKVSAKQAMIKSGVPCVPGSEG 136

Query: 112 ---LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
                 +  + +   +  P +IK   GG   G+ V+  + ++   +     ++       
Sbjct: 137 ALPEDPKEILATAKKVGYPVIIKAAGGGGGRGMRVVHTEAALINAVNMTREEAGRAFGNP 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
           ++ +E++++    +   ++ D   +   +            K          PA  IP  
Sbjct: 197 EVYMEKFLEHPRHVEIQILADQHRNAVWLGERDCSMQRRHQK-----VIEEAPAPHIPRR 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + + +      A + IG RG    +FL+   + + +++E+N 
Sbjct: 252 LIERIGDRCAEACKKIGYRGAGTFEFLY--ENGEFYFIEMNT 291


>gi|322689984|ref|YP_004209718.1| propionyl-CoA carboxylase subunit alpha [Bifidobacterium longum
           subsp. infantis 157F]
 gi|320461320|dbj|BAJ71940.1| propionyl-CoA carboxylase alpha subunit [Bifidobacterium longum
           subsp. infantis 157F]
          Length = 654

 Score = 74.4 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 38/199 (19%), Positives = 72/199 (36%), Gaps = 12/199 (6%)

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN----RFTMDSQHLISPPY 128
           E     +      A     DK+ +++V     VP  P +       R  +D  H    P 
Sbjct: 99  EDAGAIWVGPHHTALVDLGDKITARRVALRAKVPPVPGLSEPVTDVRTLLDFAHTHGYPI 158

Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD--QLLIEQYVD-GIELTCGVMGDA 185
           ++K   GG   GI V+  D+ +    +   +   GD  +  IE++VD    +      D+
Sbjct: 159 MMKRTDGGGGHGITVVHDDEELRRFYMNHDALQGGDLKEYFIEKFVDKARHVETQSGRDS 218

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
             + T  +           K             +  +I   ++  +      +G  G+  
Sbjct: 219 HGNFTVYSTRDCSLQRRNQK----LVEEAPAPFLSEEIISTLEEYSRRLFTTVGYVGLGT 274

Query: 246 SDFLFDPLSRKVFWLEINV 264
            +F+  P + KV++LE+N 
Sbjct: 275 CEFMVTP-NGKVYFLEVNP 292


>gi|319787363|ref|YP_004146838.1| carbamoyl-phosphate synthase, large subunit [Pseudoxanthomonas
           suwonensis 11-1]
 gi|317465875|gb|ADV27607.1| carbamoyl-phosphate synthase, large subunit [Pseudoxanthomonas
           suwonensis 11-1]
          Length = 1080

 Score = 74.4 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 46/278 (16%), Positives = 100/278 (35%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D D            ++V  ++A  KPD    
Sbjct: 29  SGAQACKALREEGYRVVLVNSNPATIMTDPDTADAVYIEPINWQTVEKIIAKEKPDALLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      +LE   +    +   A  ++ D+   +  +   G+    + +
Sbjct: 89  TMGGQTALNCALDLADNGVLEKYNVELIGAKREAIRMAEDRELFRVAMQEIGLECPKAEV 148

Query: 113 VNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
              F    + Q  +  P +I+P       G  +    +     + +    +   ++L+E+
Sbjct: 149 ARSFEQAVEIQAKVGYPTIIRPSFTLGGSGGGIAYNREEFEEIVKRGLELSPVHEVLVEE 208

Query: 171 YVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            V G  E    V+ D + + +   ++   D           +S  V PA+ +    Y+ +
Sbjct: 209 SVLGWKEFEMEVVRDTADNCIIVCSIENLDPMGVHT----GDSITVAPAQTLTDKEYQRL 264

Query: 228 QRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +  + +V  +E+N 
Sbjct: 265 RDASIAVLRKIGVDTGGSNVQFGINAQTGRVVVIEMNP 302



 Score = 62.4 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 31/199 (15%), Positives = 78/199 (39%), Gaps = 8/199 (4%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQHLISPPYV 129
           LE   +P   +   +  L+ D+ R +Q+V   G+   P+         +     I  P V
Sbjct: 654 LEANGVPVIGTSPDSIDLAEDRERFQQLVEKLGLKQPPNRTARTADEALALAREIGYPLV 713

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLD 188
           ++P        + ++  +  +   +  +   ++   +L+++++D  +E+   ++ DA  +
Sbjct: 714 VRPSYVLGGRAMEIVYGESDLARYVRDAVKVSNDSPVLLDRFLDNAVEVDVDLIADAEGN 773

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                V   +       +S  +S  + P  +      E++R      + +   G+  + F
Sbjct: 774 TLIGGV--MEHIEEAGVHSGDSSCSLPPYSLSQATQAELRRQVVELAKGLNVVGLMNTQF 831

Query: 249 -LFDPLSRK--VFWLEINV 264
            +      +  V+ LE+N 
Sbjct: 832 AIQTNEEGEDTVYLLEVNP 850


>gi|313681258|ref|YP_004058996.1| urea carboxylase [Sulfuricurvum kujiense DSM 16994]
 gi|313154118|gb|ADR32796.1| urea carboxylase [Sulfuricurvum kujiense DSM 16994]
          Length = 1199

 Score = 74.4 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 35/257 (13%), Positives = 85/257 (33%), Gaps = 32/257 (12%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+           I +             K  ++ +  +  VP+ P   +
Sbjct: 77  AIHPGYGFLSENAAFSRRCAQEGIVFIGPTPKHMEDFGLKHTARSMAKAQNVPLLPGTEL 136

Query: 114 NRFTMDS---QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG----DQL 166
                ++      I  P ++K   GG  +G+ +    + +          +        +
Sbjct: 137 LENVQEALRAAQEIGYPVMLKSTAGGGGIGMQLCYGAEDLENGFESVGRLSKSNFSQGGI 196

Query: 167 LIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIY 224
            +E++V     +   + GD   DV  +           L+  +       PA  +  ++ 
Sbjct: 197 YLEKFVASARHIEVQIFGDGKGDVIALGE-----RDCSLQRRNQKVIEETPAPGLSEEVR 251

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
             ++  A    ++   +     +F++D    K ++LE+N             +    G +
Sbjct: 252 DALRSAAVNLARSASYKSAGTVEFVYDTTEEKFYFLEVNT-----------RLQVEHGVT 300

Query: 285 FR----ELLLWMVEDAS 297
                 +L+ WM+ +A+
Sbjct: 301 EEIFGVDLVEWMILEAA 317


>gi|227820319|ref|YP_002824290.1| propionyl-CoA carboxylase subunit alpha [Sinorhizobium fredii
           NGR234]
 gi|227339318|gb|ACP23537.1| propionyl-CoA carboxylase alpha chain protein [Sinorhizobium fredii
           NGR234]
          Length = 678

 Score = 74.4 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 42/240 (17%), Positives = 83/240 (34%), Gaps = 16/240 (6%)

Query: 34  SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDK 93
           S I +D+ +   +     D      +G   E+      LE   + +    + A     DK
Sbjct: 70  SYIVIDK-ILEAIRKTGADAVHPG-YGFLSENAAFAEALEKEGVAFIGPPVKAIEAMGDK 127

Query: 94  MRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS 149
           + SK++ +  GV   P     I      +     I  P +IK   GG   G+ +   ++ 
Sbjct: 128 ITSKKLAAKAGVSTVPGHMGLIEDAGEAVRIASSIGFPVMIKASAGGGGKGMRIAWNERE 187

Query: 150 IPLDLL----QSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYEL 204
                     ++ S    D++ IE++V +   +   V+GD   +   +   +        
Sbjct: 188 AREGFQSSKNEAKSSFGDDRIFIEKFVTEPRHIEIQVLGDRHGNTLYLGERECSIQRRNQ 247

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K             +     + +   A    +A+G       +F+ D   R  ++LE+N 
Sbjct: 248 K----VIEEAPSPFLDETTRRAMSEQAVALAKAVGYHSAGTVEFIVDA-ERNFYFLEMNT 302


>gi|124008778|ref|ZP_01693467.1| carbamoyl-phosphate synthase, large subunit [Microscilla marina
           ATCC 23134]
 gi|123985691|gb|EAY25571.1| carbamoyl-phosphate synthase, large subunit [Microscilla marina
           ATCC 23134]
          Length = 963

 Score = 74.4 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 52/278 (18%), Positives = 97/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DV------------DRSVGLVLAHLKPDLAFN 56
           SG   A +L++ G +V+ I         D              +S+  +L     D    
Sbjct: 29  SGSQAARSLKEEGIEVTLINSNPATIMTDPSIADHIYLKPLNKKSIIEILEAHDIDAVLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      + E   +      I A   + D+ R +  +   G  VC    
Sbjct: 89  TMGGQTALNLCIDCQKAGVWEKFNVEIIGVDINAVETTEDRERFRLRMHELGANVCKGKT 148

Query: 113 VNRF--TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
              F    +    +  P VI+P       G   +  ++     L +  + +   ++LIEQ
Sbjct: 149 ATSFLKGKEIAQDVGFPLVIRPSYTLGGYGGGFVHSEEEFNKALTRGLTASPIHEVLIEQ 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            + G  E    ++ D++ +V  I   ++ D           +S  V PA  +    Y+ +
Sbjct: 209 SILGWKEFELELLRDSAGNVIIICSIENVDPMGIHT----GDSITVAPAMTLSDKHYQAM 264

Query: 228 QRLAFLAHQAIG-CRGISRSDFLFDPLSRKVFWLEINV 264
           + LA      IG   G     F  +P +  +  +EIN 
Sbjct: 265 RNLAIKTMNGIGQFAGGCNIQFAVNPENDDIIVIEINP 302



 Score = 66.3 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 34/277 (12%), Positives = 88/277 (31%), Gaps = 57/277 (20%)

Query: 25  ALEDAGFKVSQI----DVDRSVGLVLAHLKPDLAF------NVLHGNFGEDGLVQAI--- 71
           A+++AG++   I    +   +   +   L  +  F       +LH     +G++  +   
Sbjct: 602 AVKEAGYEAIMINCNPETVSTDFDIADKLYFEPVFWEHIYDIILHEKP--EGVIVQLGGQ 659

Query: 72  --------LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTMDSQ 121
                   L+   IP   +   A  L+ D+     ++    +P      +      ++  
Sbjct: 660 TALKLAEKLDRYNIPIIGTSYKALDLAEDRGSFSTLLKENDIPYPEFGSVSTTEGALELS 719

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
             +  P +++P        + ++  +Q +   ++   ++   +Q+L++ ++D        
Sbjct: 720 KKLDFPLLVRPSYVLGGNKMKIVINEQELEEHVVDVLNYFPDNQILLDHFLDQ------- 772

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK--------------IPLDIYKEV 227
                     I          E  Y      H+ PA               +   + +++
Sbjct: 773 ---------AIEAEADAICDGENVYIIGIMEHIEPAGIHSGDSHAVLPPFSLSPLLMEKI 823

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +       A+   G+    F        V+ +E N 
Sbjct: 824 AQYTKKIALALDTVGLINIQFAI--KGNDVYVIEANP 858


>gi|92115200|ref|YP_575128.1| carbamoyl-phosphate synthase large subunit [Chromohalobacter
           salexigens DSM 3043]
 gi|91798290|gb|ABE60429.1| carbamoyl-phosphate synthase large subunit [Chromohalobacter
           salexigens DSM 3043]
          Length = 1076

 Score = 74.4 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 47/278 (16%), Positives = 100/278 (35%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +              D         ++V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPVMADATYIEPITWQAVAKIIEKERPDAILP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      +LE   +    +   A   + D+    + + + G+    + +
Sbjct: 89  TMGGQTALNCALDLDKHGVLETYGVEMIGANAAAINKAEDRDLFDKAMKNIGLECPKAKV 148

Query: 113 VNR--FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +R     + Q  +  P +I+P       G  V    +       +    ++  +LLI++
Sbjct: 149 AHRMSEAWEIQGELGFPVIIRPSYTMGGSGGGVAYNKEEFEEICTRGFELSNNHELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + + +   A+   D           +S  V PA+ +    Y+ +
Sbjct: 209 SLLGWKEYEMEVVRDKNDNCIIVCAIENFDPMGVHT----GDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  DP + +V  +E+N 
Sbjct: 265 RDASLAVLREIGVETGGSNVQFGVDPQTGRVVVIEMNP 302



 Score = 62.4 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 28/203 (13%), Positives = 67/203 (33%), Gaps = 22/203 (10%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQHLISPPYV 129
           LE   +P   +   A   + D+ R +Q++   G+   P+     F         I  P V
Sbjct: 653 LEAAGVPIIGTTPDAIDRAEDRERFQQMIDKLGLKQPPNATARSFEDAFAKAEKIGYPLV 712

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL--------IEQYVDGIELTCGV 181
           ++P        + ++     +   +  +   ++   +L        IE  +D +     V
Sbjct: 713 VRPSYVLGGRAMEIVYDAAELEGYMTHAVKVSNDSPVLLDHFLNAAIEVDIDAVSDGEQV 772

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241
           +    +   E A   S            ++  + P  +P  +  E++        A+   
Sbjct: 773 VIGGIMQHIEQAGVHSG----------DSACSLPPYSLPAHVQDEMRDQVKRM--ALELN 820

Query: 242 GISRSDFLFDPLSRKVFWLEINV 264
            +   +        +++ +E+N 
Sbjct: 821 VVGLMNVQLAWQDDEIYVIEVNP 843


>gi|331017800|gb|EGH97856.1| pyruvate carboxylase subunit A [Pseudomonas syringae pv. lachrymans
           str. M302278PT]
          Length = 471

 Score = 74.4 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 77/221 (34%), Gaps = 20/221 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            LH  +G   E+  +  I     I +            DK  +++ +   GVPV P    
Sbjct: 76  ALHPGYGFLSENAELADICTERGIKFIGPSAEVIRRMGDKTEARRSMIKAGVPVTPGTEG 135

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGD 164
            +   +  +     I  P ++K   GG   GI      + +           + ++   +
Sbjct: 136 NVADIKEALVEGERIGYPVMLKATSGGGGRGIRRCNSREELEQAFPRVISEATKAFGSAE 195

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDI 223
             L +  V+   +   ++GD+  +V  +            K        + P  ++  + 
Sbjct: 196 VFLEKCIVNPKHIEAQILGDSFGNVVHLFERDCSIQRRNQKL-----IEIAPSPQLTPEQ 250

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              +  L+  A +A+G       +FL      +V+++E+N 
Sbjct: 251 RAYIGDLSVRAAKAVGYENAGTVEFLL--AEGEVYFMEMNT 289


>gi|298252680|ref|ZP_06976474.1| carbamoylphosphate synthase large subunit [Gardnerella vaginalis
           5-1]
 gi|297533044|gb|EFH71928.1| carbamoylphosphate synthase large subunit [Gardnerella vaginalis
           5-1]
          Length = 1131

 Score = 74.4 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 48/288 (16%), Positives = 106/288 (36%), Gaps = 36/288 (12%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI--------------------DVDRS-VGLV 45
           G ++E + S   G      L + G +V  +                     +D S +  +
Sbjct: 21  GQAAEFDYS---GTQACRVLREEGIRVILVNSNPATIMTDPELADATYIEPIDTSILERI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +A  +PD     L G    +  +      ILE   +    + + A     D+   K+VV 
Sbjct: 78  IAKERPDALLPTLGGQTALNAAMDLGRAGILEKYNVELIGASLEAIDRGEDRELFKKVVE 137

Query: 102 SCGVPVCPSILVNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G     S + +      +    +  P V++P      LG  +   ++ +         
Sbjct: 138 KAGAESAKSFIAHSIEEVDKIVETLGYPVVVRPSFTMGGLGSGIAHNEEELHRIAGAGIH 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
           ++  +++LIE+ ++G  E    +M DA  +V  +   ++      +   + +S  V P  
Sbjct: 198 YSPTNEVLIEEGIEGWKEFELELMRDAKDNVVVVCPIENVD---PVGVHTGDSITVAPCF 254

Query: 219 -IPLDIYKEVQRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
            +    Y++++ +     + +G   G     F  +P + ++  +E+N 
Sbjct: 255 TLTDREYQKMRDIGIAIIRGVGVDTGGCNIQFAINPQTGRIIVIEMNP 302



 Score = 56.7 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 36/233 (15%), Positives = 73/233 (31%), Gaps = 29/233 (12%)

Query: 67  LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTMDSQHLI 124
            + A L+   +P   +   A  L+ ++    +V+   G+        L      D+ H I
Sbjct: 651 SLAARLKAAGVPILGTTPEAIDLAENRELFGEVLRQEGMNAPRYGTALSLEEAKDAAHAI 710

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
             P +++P       G+ ++  D  +   + ++      D +     V G   +  ++  
Sbjct: 711 GYPVLVRPSYVLGGRGMEIVYDDAQLAKYVDRALDEARADTV-----VSGRLPSPLLIDK 765

Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK--------------IPLDIYKEVQRL 230
              D  EI V     Y     Y      HV  A               +  D  + ++  
Sbjct: 766 FLQDAIEIDV--DALYDGNELYIGGIMEHVEEAGVHSGDAACTLPPSTLSDDQIRRLREG 823

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283
                +    RG+    + F      ++ +E N +   T     P  +   G 
Sbjct: 824 TLSIARGCSVRGLINVQYAFMA--NTLYVIEANPRASRT----VPFASKATGV 870


>gi|317490562|ref|ZP_07949038.1| carbamoyl-phosphate synthase [Eggerthella sp. 1_3_56FAA]
 gi|316910342|gb|EFV31975.1| carbamoyl-phosphate synthase [Eggerthella sp. 1_3_56FAA]
          Length = 1078

 Score = 74.4 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 47/278 (16%), Positives = 94/278 (33%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG      L+  G++V  +         D                V  V+A  +PD    
Sbjct: 29  SGAQACKVLKADGYRVVLVNSNPATIMTDPGLADRTYVEPITVEFVEQVIAKERPDALLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--S 110
            L G  G +  V+     IL    +      + A     D+ +  + ++  G+       
Sbjct: 89  TLGGQTGLNTAVELARAGILAKYGVEMIGCDLEAIERGEDRKQFNECMAELGIETSRSGY 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                   D    +  P V++P       G  +      +   + Q    +   ++L+E+
Sbjct: 149 AYSIADAEDIVAELGYPVVLRPSFTLGGAGGGIAHDAAELHEIVGQGLELSPAGEVLVEE 208

Query: 171 YVDG-IELTCGVMGDASL-DVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            ++G  E    VM D +   +   ++   D           +S  V PA+ +    Y+ +
Sbjct: 209 SIEGWKEYEMEVMRDRAGNGIIVCSIENFDAMGVHT----GDSITVAPAQTLSDVEYQRM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RAASLAILEKIGVETGGSNVQFAVNPENGRMIVIEMNP 302



 Score = 60.9 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/220 (11%), Positives = 77/220 (35%), Gaps = 12/220 (5%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGV--PVCPSILVNRFTMDSQHLISPPYVIKPL 133
            +P   +   A  L+ D+ R   V+   G+  P        +        I  P +++P 
Sbjct: 658 GVPIMGTSPEAIDLAEDRDRFAAVLDELGIVYPAAGMASTYQEACVVADRIGFPLLVRPS 717

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEI 192
                 G+ ++     +   + +++  +    + ++++++G +E+    + D        
Sbjct: 718 YVLGGRGMGIVYDGAQLEKYMAEAAKISPDHPVYLDRFLEGAVEVDLDALCDGEQVFVGG 777

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            +   +       +S  ++    P  +   +  +++ +A      +G  G+    F    
Sbjct: 778 VLEHIEMAGI---HSGDSACCTPPFALSEAVQAQLRAIARRLALRLGVVGLINIQFAI-- 832

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
             + ++ +E N +   T     P  +   G    ++   +
Sbjct: 833 KDQVIYIIEANPRASRT----VPFASKATGVPLAKVAARI 868


>gi|300313399|ref|YP_003777491.1| acyl-CoA carboxylase biotin subunit [Herbaspirillum seropedicae
           SmR1]
 gi|300076184|gb|ADJ65583.1| acyl-CoA carboxylase biotin subunit protein [Herbaspirillum
           seropedicae SmR1]
          Length = 462

 Score = 74.4 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 79/220 (35%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            LH  +G   E+      +    + +            DK  +++  ++ GVPV P    
Sbjct: 80  ALHPGYGFLSENAAFAEAVNAAGLIFVGPQADTIRRMGDKAEARRTAAAAGVPVVPGSAG 139

Query: 114 NRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGDQ 165
               + +       I  P +IK   GG   GI + +    +    PL   ++ +      
Sbjct: 140 ELEDLATALACADEIGYPLLIKASAGGGGRGIRMARDATELAREFPLAQAEAQAAFGSAA 199

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+++     +   ++GD    V           S + +   +      PA +     
Sbjct: 200 VYLERFIRRARHIEVQILGDGERAVHLFE----RECSLQRRRQKVLEEAPSPA-LTPAQR 254

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +   A    + +  RG    ++LFD  S + F++E+N 
Sbjct: 255 QALCDSAVRLAERLHYRGAGTLEYLFDDESGEFFFIEMNT 294


>gi|283783377|ref|YP_003374131.1| carbamoyl-phosphate synthase, large subunit [Gardnerella vaginalis
           409-05]
 gi|283441375|gb|ADB13841.1| carbamoyl-phosphate synthase, large subunit [Gardnerella vaginalis
           409-05]
          Length = 1131

 Score = 74.4 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 48/288 (16%), Positives = 106/288 (36%), Gaps = 36/288 (12%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI--------------------DVDRS-VGLV 45
           G ++E + S   G      L + G +V  +                     +D S +  +
Sbjct: 21  GQAAEFDYS---GTQACRVLREEGIRVILVNSNPATIMTDPELADATYIEPIDTSILERI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +A  +PD     L G    +  +      ILE   +    + + A     D+   K+VV 
Sbjct: 78  IAKERPDALLPTLGGQTALNAAMDLGRAGILEKYNVELIGASLEAIDRGEDRELFKKVVE 137

Query: 102 SCGVPVCPSILVNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G     S + +      +    +  P V++P      LG  +   ++ +         
Sbjct: 138 KAGAESAKSFIAHSIEEVDKIVETLGYPVVVRPSFTMGGLGSGIAHNEEELHRIAGAGIH 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
           ++  +++LIE+ ++G  E    +M DA  +V  +   ++      +   + +S  V P  
Sbjct: 198 YSPTNEVLIEEGIEGWKEFELELMRDAKDNVVVVCPIENVD---PVGVHTGDSITVAPCF 254

Query: 219 -IPLDIYKEVQRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
            +    Y++++ +     + +G   G     F  +P + ++  +E+N 
Sbjct: 255 TLTDREYQKMRDIGIAIIRGVGVDTGGCNIQFAINPQTGRIIVIEMNP 302



 Score = 56.7 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 36/233 (15%), Positives = 73/233 (31%), Gaps = 29/233 (12%)

Query: 67  LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTMDSQHLI 124
            + A L+   +P   +   A  L+ ++    +V+   G+        L      D+ H I
Sbjct: 651 SLAARLKAAGVPILGTTPEAIDLAENRELFGEVLRQEGMNAPRYGTALSLEEAKDAAHAI 710

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
             P +++P       G+ ++  D  +   + ++      D +     V G   +  ++  
Sbjct: 711 GYPVLVRPSYVLGGRGMEIVYDDAQLAKYVDRALDEARADTV-----VSGRLPSPLLIDK 765

Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK--------------IPLDIYKEVQRL 230
              D  EI V     Y     Y      HV  A               +  D  + ++  
Sbjct: 766 FLQDAIEIDV--DALYDGNELYIGGIMEHVEEAGVHSGDAACTLPPSTLSDDQIRRLREG 823

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283
                +    RG+    + F      ++ +E N +   T     P  +   G 
Sbjct: 824 TLSIARGCSVRGLINVQYAFMA--NTLYVIEANPRASRT----VPFASKATGV 870


>gi|239627633|ref|ZP_04670664.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239517779|gb|EEQ57645.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 1072

 Score = 74.4 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 38/225 (16%), Positives = 82/225 (36%), Gaps = 13/225 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTMDSQHLISPPYV 129
           L  + +P   +       + D+ R  +++  C +P      V        + H +  P +
Sbjct: 652 LMKMGVPILGTAAEDVDAAEDRERFDEILEQCNIPRPAGHTVFTAEEAKKAAHELGYPVL 711

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           ++P       G+ +   D+ I   +   +       +L+++Y+ G E+    + D     
Sbjct: 712 VRPSYVLGGQGMQIAISDEDIDEFIGIINMIAQEHPILVDKYIMGKEIEVDAICDG---- 767

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           T+I +P    +       S +S  V PA  I       +        +A+  +G+    F
Sbjct: 768 TDILIPGIMQHIERTGIHSGDSISVYPAMDITQHNIDTIVDYTEKLARALHVKGMINIQF 827

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           + D     V+ +E+N +   T     P ++   G     L   ++
Sbjct: 828 IVD--GDDVYIIEVNPRSSRT----VPYISKVTGIPIVPLATQII 866



 Score = 66.3 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 49/289 (16%), Positives = 100/289 (34%), Gaps = 39/289 (13%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQID-------VDRSVG--------------LV 45
           G ++E + +   G     +L++ G +V  ++        D+ +                +
Sbjct: 21  GQAAEFDYA---GTQACRSLKEEGVEVVLLNSNPATIMTDKDIADRVYIEPLTVEVVEQL 77

Query: 46  LAHLKPDLAFNVLHGNFG-------EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQ 98
           +   KPD     L G  G       ED       +   +    +  L    + D+   K+
Sbjct: 78  ILKEKPDSVLPTLGGQAGLNLAMELEDA---GFFKEHNVRLIGTTALTIKKAEDREMFKE 134

Query: 99  VVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
            +   G PV PS +V   +  ++    I  P V++P       G  +    +     L  
Sbjct: 135 TMEKIGEPVAPSDIVEDVKHGLEIAAQIGYPVVLRPAYTLGGSGGGIAANPEQCAEILEN 194

Query: 157 SSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215
               +   Q+L+E+ + G  E+   VM D + +V  I V   +       ++  +     
Sbjct: 195 GLRLSRVGQVLVERCIAGWKEIEYEVMRDGAGNV--ITVCNMENIDPVGVHTGDSIVVAP 252

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              +    Y+ ++  A      +G  G     +  +P S +   +E+N 
Sbjct: 253 SQTLGDKEYQMLRTSALNIISELGITGGCNVQYALNPDSFEYCVIEVNP 301


>gi|184155678|ref|YP_001844018.1| carbamoyl phosphate synthase large subunit [Lactobacillus fermentum
           IFO 3956]
 gi|226700931|sp|B2GD06|CARB_LACF3 RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|183227022|dbj|BAG27538.1| carbamoylphosphate synthase large subunit [Lactobacillus fermentum
           IFO 3956]
          Length = 1059

 Score = 74.4 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 48/299 (16%), Positives = 100/299 (33%), Gaps = 42/299 (14%)

Query: 22  CASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNV--LHGNFGEDGLVQ- 69
           C  AL+  G++   I         D   S  L    L  +   NV  L    G   +VQ 
Sbjct: 577 CVRALQKLGYEAIVINSNPETVSTDFSVSDKLYFEPLTLENVLNVTDLEQPVG--AIVQF 634

Query: 70  ---------AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--M 118
                    + LE   +    + +     + D+    QV+    +     +        +
Sbjct: 635 GGQTAINLASGLEANGVKILGTTVADLDAAEDRELFDQVIKDLNLRQPIGMTATTRQGVL 694

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           D+   I  P +++P        + ++     +   L Q++       +L++ Y++G E  
Sbjct: 695 DAAKEIGYPVLVRPSYVLGGKAMEIVYGQAELEDYLNQNADVTGSHPILVDAYLEGAECE 754

Query: 179 CGVMGDAS---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLA 234
              + D     L      +  +  +S        +S  V P + +   +  +++      
Sbjct: 755 VDAICDGERVLLPGIMEHIEHAGVHS-------GDSMAVYPPQSLSGAVKVQIEEATKKL 807

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
             A+ C GI    F+      + + LE+N +   T     P ++   G    +L   ++
Sbjct: 808 AVALKCVGIMNIQFIIH--DGQAYVLEVNPRASRT----VPFLSKVTGIEMAQLATKVI 860



 Score = 73.6 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 52/314 (16%), Positives = 112/314 (35%), Gaps = 37/314 (11%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQIDVDRS---------------------VGLV 45
           G ++E + S   G     AL++ G++   ++ + +                     +  +
Sbjct: 21  GQAAEFDYS---GTQACLALKEEGYETVLVNSNPATIMTDKGIADHVYIEPLTVAALTRI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           L    PD+    L G  G +  V      IL+ L I    + + +   + D+ + K+++ 
Sbjct: 78  LRQEAPDVLLPTLGGQIGLNLAVALSKTGILDELGIELLGTKLASIDQAEDREKFKELMQ 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G PV  S+ V+     +     +  P +++P       G  +   +  +         
Sbjct: 138 ELGEPVPASLTVSTVEQALAFAKTVGYPVIVRPAFTMGGTGGGLANNEAELAEIAKNGLE 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   Q LIE+ + G  E+   VM DA+ +   +   ++  +     ++  +        
Sbjct: 198 LSPATQCLIEKSIAGYKEIEFEVMRDAADNTMVVCCMEN--FDPVGIHTGDSIVFAPSQT 255

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278
           +    Y+ ++  A     A+   G        DP S     +E+N  P ++  S     +
Sbjct: 256 LADREYQRLRDCALKLISALKIEGGCNVQLALDPNSYDYNVIEVN--PRVSRSS--ALAS 311

Query: 279 AYAGYSFRELLLWM 292
              GY   +L   +
Sbjct: 312 KATGYPIAKLAAKI 325


>gi|209549468|ref|YP_002281385.1| carbamoyl-phosphate synthase L chain ATP-binding [Rhizobium
           leguminosarum bv. trifolii WSM2304]
 gi|209535224|gb|ACI55159.1| Carbamoyl-phosphate synthase L chain ATP-binding [Rhizobium
           leguminosarum bv. trifolii WSM2304]
          Length = 669

 Score = 74.4 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 41/220 (18%), Positives = 81/220 (36%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H  +G   E     A LE   I +      A     DK+ SK+  ++ GV   P  L 
Sbjct: 77  AVHPGYGFLSERASFCAELEKQGIVFIGPKPKAIMAMGDKIESKKFANAAGVSTVPGHLG 136

Query: 113 VNRFTMDSQHL---ISPPYVIKPLKGGSSLGIIV----IKKDQSIPLDLLQSSSWNHGDQ 165
           V      ++ +   I  P +IK   GG   G+ +    ++          ++ S    D+
Sbjct: 137 VIEDAAHAEVIAGGIGYPVMIKASAGGGGKGMRIAWNEVEVRDGFERARSEAKSSFGDDR 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+++ +   +   V+ DA  +V  +   +        K     +       +     
Sbjct: 197 VFIEKFIVEPRHIEIQVLADAHGNVVYLGERECSIQRRNQK----VAEEAPSPFLDEKTR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K +   +    +A+  +     +F+ D   R  ++LE+N 
Sbjct: 253 KAMGEQSVALAKAVDYQSAGTVEFIVD-RDRNFYFLEMNT 291


>gi|159488652|ref|XP_001702319.1| biotin carboxylase, acetyl-CoA carboxylase component [Chlamydomonas
           reinhardtii]
 gi|158271224|gb|EDO97049.1| biotin carboxylase, acetyl-CoA carboxylase component [Chlamydomonas
           reinhardtii]
          Length = 483

 Score = 74.4 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/198 (17%), Positives = 72/198 (36%), Gaps = 15/198 (7%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIK 131
            + +         L  DK  ++  +   GVP  P     I  +   + +   I  P +IK
Sbjct: 118 GLEFIGPKPQQIRLMGDKSTARDTMKKAGVPTVPGSEGLIQDDADAIANAQRIGFPVMIK 177

Query: 132 PLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDAS 186
              GG   G+ +  K++ +         ++ +      + +E++V D   +   V+ D  
Sbjct: 178 ATAGGGGRGMRLCTKEEDLMPLFKQAQQEAEAAFGNGAVYMERFVQDPRHIEFQVLADKY 237

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRS 246
            +V  +            K             +  ++ K +   A  A +AIG  G+   
Sbjct: 238 GNVVHLGERDCSVQRRNQK----LVEEAPSPALTPEVRKAMGDAAVAAAKAIGYVGVGTI 293

Query: 247 DFLFDPLSRKVFWLEINV 264
           +FL++      +++E+N 
Sbjct: 294 EFLWEKKG--FYFMEMNT 309


>gi|323697835|ref|ZP_08109747.1| Carbamoyl-phosphate synthase L chain ATP-binding [Desulfovibrio sp.
           ND132]
 gi|323457767|gb|EGB13632.1| Carbamoyl-phosphate synthase L chain ATP-binding [Desulfovibrio
           desulfuricans ND132]
          Length = 1236

 Score = 74.4 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 35/222 (15%), Positives = 81/222 (36%), Gaps = 20/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   ED    A      I +         +  +K+  +++    GVPV P    
Sbjct: 92  AIHPGWGFCSEDDTFPARCAREGIIFIGPEQEPMRILGNKVAVRKLAIEQGVPVVPGSEG 151

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQL 166
            +      +    I  P ++K   GG   GI  + +++ +     ++S+         +L
Sbjct: 152 AVSIPEAREIAKEIGFPVMLKAEGGGGGRGIYEVYQEEDLENAFSKASALAQASFGNPRL 211

Query: 167 LIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP---AKIPLD 222
            +E+ +     +   V+ D   +V  +     D     ++ +      + P    +   +
Sbjct: 212 YVEKLLTSVRHIEIQVIADKYGNVFCL-----DERDCTVQRNHQKLIEITPSPWPRFTPE 266

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + + ++  A     A+G   ++  +FL D      + +E+N 
Sbjct: 267 LRERLKGYARKLVSAVGYYSLATVEFLVDA-EGVPYLIEVNT 307


>gi|309800594|ref|ZP_07694739.1| carbamoyl-phosphate synthase, large subunit [Streptococcus infantis
           SK1302]
 gi|308115774|gb|EFO53305.1| carbamoyl-phosphate synthase, large subunit [Streptococcus infantis
           SK1302]
          Length = 1058

 Score = 74.4 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 26/228 (11%), Positives = 76/228 (33%), Gaps = 19/228 (8%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYV 129
           L    +    + +     + D+   +Q +    +P  P            +   I  P +
Sbjct: 646 LAKAGVTILGTQVADLDRAEDRDLFEQALKDLDIPQPPGQTATNEEEAVLAARKIGFPVL 705

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS--- 186
           ++P        + +++ +  +   +  +   +    +L++ Y+ G E     + D     
Sbjct: 706 VRPSYVLGGRAMEIVENEDDLRSYMRTAVKASPDHPVLVDSYIVGQECEVDAISDGQNVL 765

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISR 245
           +      + ++  +S        +S  V P + +   + + +          + C G+  
Sbjct: 766 IPGIMEHIERAGVHS-------GDSMAVYPPQTLSQKVQETIADYTKRLAIGLNCLGMMN 818

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
             F+      KV+ +E+N +   T     P ++        ++   ++
Sbjct: 819 IQFVI--KDEKVYVIEVNPRASRT----VPFLSKVTNIPMAQVATKLI 860



 Score = 70.2 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 54/302 (17%), Positives = 115/302 (38%), Gaps = 37/302 (12%)

Query: 20  KACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNVL 58
           +AC S L++ G++V  ++        D+ +                +L   +PD     L
Sbjct: 32  QACLS-LKEEGYEVVLVNSNPATIMTDKEIADKVYIEPITLEFVTRILRKERPDALLPTL 90

Query: 59  HGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
            G  G +  ++     IL+ L +    + + A   + D+   KQ++     P+  S +VN
Sbjct: 91  GGQTGLNMAMELSKNGILDELGVELLGTKLSAIDQAEDRDLFKQLMEELNQPIPESEIVN 150

Query: 115 --RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                +     I  P +++P       G  +   ++ +          +   Q LIE+ +
Sbjct: 151 TVEEAVAFAATIGYPVIVRPAFTLGGTGGGMCANEEELREISENGLKLSPVTQCLIERSI 210

Query: 173 DG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRL 230
            G  E+   VM D++ +   + V   + +   +   + +S    PA+ +     + ++  
Sbjct: 211 AGFKEIEYEVMRDSADNA--LVVCNMENFD-PVGIHTGDSIVFAPAQTMSDYENQMLRDA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    +A+   G        DP S K + +E+N  P ++  S     +   GY   +L  
Sbjct: 268 SLSIIRALKIEGGCNVQLALDPHSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325


>gi|163788691|ref|ZP_02183136.1| acetyl-CoA carboxylase, biotin carboxylase [Flavobacteriales
           bacterium ALC-1]
 gi|159875928|gb|EDP69987.1| acetyl-CoA carboxylase, biotin carboxylase [Flavobacteriales
           bacterium ALC-1]
          Length = 482

 Score = 74.4 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 76/220 (34%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     + E   I +      A  +   K+ +K+ V    +P+ P    
Sbjct: 79  AIHPGYGFLSENADFAELCEANGIIFIGPRSKAIKVMGSKLAAKETVKGYNIPMVPGTDE 138

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
            I            I  P +IK   GG   G+ +++ +      + ++ S          
Sbjct: 139 AITDIPKAKKIAKEIGFPILIKASAGGGGKGMRIVENEAEFESQMDRAISEATNAFGDGS 198

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+YV     +   VM D   +V      +        K           A +  ++ 
Sbjct: 199 VFIEKYVGSPRHIEIQVMADMHGNVLHFFERECSVQRRHQK----VVEEAPSAVLTPELR 254

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +++ + A    ++    G    +FL D      ++LE+N 
Sbjct: 255 EKMGQAAINVARSCDYIGAGTVEFLLDENLN-FYFLEMNT 293


>gi|327194681|gb|EGE61529.1| propionyl-CoA carboxylase protein, alpha subunit [Rhizobium etli
           CNPAF512]
          Length = 669

 Score = 74.0 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 80/220 (36%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H  +G   E     A LE   I +      A     DK+ SK+  ++ GV   P  L 
Sbjct: 77  AVHPGYGFLSERAAFCAELEKQGIVFIGPKPKAIMAMGDKIESKKFANAAGVSTVPGHLG 136

Query: 113 VNRFTMDSQHL---ISPPYVIKPLKGGSSLGIIVIKKDQS----IPLDLLQSSSWNHGDQ 165
           V      ++ +   I  P +IK   GG   G+ +                ++ S    D+
Sbjct: 137 VIEDAAHAETIAGGIGYPVMIKASAGGGGKGMRIAWNQAEVRDGFERARSEAKSSFGDDR 196

Query: 166 LLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE++ V+   +   V+ DA  +V  +   +        K     +       +  +  
Sbjct: 197 VFIEKFVVEPRHIEIQVLADAHGNVVYLGERECSIQRRNQK----VAEEAPSPFLDENTR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K +   +    +A+  +     +F+ D   R  ++LE+N 
Sbjct: 253 KAMGEQSVALARAVEYQSAGTVEFIVD-RDRNFYFLEMNT 291


>gi|289192037|ref|YP_003457978.1| Carbamoyl-phosphate synthase L chain ATP-binding protein
           [Methanocaldococcus sp. FS406-22]
 gi|288938487|gb|ADC69242.1| Carbamoyl-phosphate synthase L chain ATP-binding protein
           [Methanocaldococcus sp. FS406-22]
          Length = 491

 Score = 74.0 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 47/277 (16%), Positives = 93/277 (33%), Gaps = 34/277 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVDRSVGLVLA------------HLKPDLAFN 56
           SG     AL++ G     +         D D +  + L               +PD    
Sbjct: 26  SGSQACKALKEEGIYTILVNSNPATIQTDTDMADKVYLEPLHPTIVEKIIEKERPDAILP 85

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G  G +  +    + IL+   I    S I    ++ D+    + ++    PV     
Sbjct: 86  TMGGQTGLNLALELHRRGILDKYGIKLLGSNIKTIEIAEDRELFAEAMAEINEPVTKCKA 145

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           VN     ++    I  P +++P       G  +    + +     +   ++   Q+LI++
Sbjct: 146 VNSVDEAIEFAEEIGYPVIVRPAFTLGGTGGGIAHNKEELMDIASKGLKYSIIHQVLIDE 205

Query: 171 YVDG-IELTCGVMGD-ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            V G  E    VM D     +    +   D            S  V P + +P + Y+++
Sbjct: 206 SVLGWKEFELEVMRDRKDTCIIVCGMENIDPMGIHT----GESIVVSPIQTLPDEFYQKL 261

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +  A    + +G  G     F  +    +   +E+N 
Sbjct: 262 RNAAIKIIRHLGIEGGCNIQFAVNKEMTEYRVIEVNP 298


>gi|219849332|ref|YP_002463765.1| carbamoyl-phosphate synthase large subunit [Chloroflexus aggregans
           DSM 9485]
 gi|219543591|gb|ACL25329.1| carbamoyl-phosphate synthase, large subunit [Chloroflexus aggregans
           DSM 9485]
          Length = 1096

 Score = 74.0 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 51/278 (18%), Positives = 94/278 (33%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D               S+  ++A  +PD    
Sbjct: 29  SGTQACKALREEGYRVVLVNSNPATIMTDPGLADATYIEPLTVPSLERIIARERPDALLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  V      IL+   +    + + A  ++ D+ R K  +   G+ V  S  
Sbjct: 89  TVGGQTALNLAVALHEAGILDKYGVELIGASVEAVRIAEDRQRFKDKMIEIGLQVPRSGT 148

Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                           P +I+P       G  +    +     + +    +   Q+LIE+
Sbjct: 149 ATTLDEALAVVAQTGFPAIIRPSFTLGGEGGGIAYNMEEFRAIVERGLDASPVSQVLIEE 208

Query: 171 YVDG-IELTCGVMGDA-SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            V G  E    VM D     V   ++   D           +S  V PA  +    Y+ +
Sbjct: 209 SVLGWKEFELEVMRDRNDNGVIICSIENIDPMGVHT----GDSITVAPAMTLTDREYERM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           + +     +A+G   G S   F   P   +++ +E+N 
Sbjct: 265 RDMGLAVLRAVGVETGGSNVQFAVSPTDGRIYVIEMNP 302



 Score = 70.5 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 49/299 (16%), Positives = 107/299 (35%), Gaps = 38/299 (12%)

Query: 26  LEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLV-------- 68
           L   G++   +         D D +  L    L  +   NV+      DG++        
Sbjct: 593 LRALGYETIMVNCNPETVSTDYDTADRLYFEPLTLEDVLNVVEEER-PDGVIIQFGGQTP 651

Query: 69  ---QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQHL 123
                 LE + +P   +   A  L+ D+ R   ++    +P         +   +     
Sbjct: 652 LKLARALEAVGVPIWGTMPEAIDLAEDRDRFGALLKELNIPAPEHGSATSWEEALSVARR 711

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVM 182
           I  P V++P        + ++  D S+   + ++ + +    +LI++++ D  E+    +
Sbjct: 712 IGYPVVVRPSYVLGGRAMAIVYDDASLERYMREAVAASPEHPVLIDRFLEDAFEMDVDAV 771

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCR 241
            D    V    + + +           +S  V+P  +   +    ++R      +A+G  
Sbjct: 772 CDGETVVIAGIMEQIELAGVHS----GDSACVIPTYMVAEEHVATMRRYTEQLARALGVV 827

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           G+   +  +      V+ LE+N +   T     P +A   G  + +L    V+ A+  R
Sbjct: 828 GL--MNIQYAMKDGVVYVLEVNPRASRT----VPFVAKATGVPWAQL---AVQCAAGAR 877


>gi|310818953|ref|YP_003951311.1| propionyl-CoA carboxylase subunit alpha [Stigmatella aurantiaca
           DW4/3-1]
 gi|309392025|gb|ADO69484.1| Propionyl-CoA carboxylase, alpha subunit [Stigmatella aurantiaca
           DW4/3-1]
          Length = 503

 Score = 74.0 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 45/240 (18%), Positives = 82/240 (34%), Gaps = 23/240 (9%)

Query: 38  VDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKM 94
           V   +  V  H   D     +H  +G   E+       E   I +      A     +K 
Sbjct: 64  VQERILEVARHAGAD----AIHPGYGFLSENASFVRACEKAGITFIGPPASAMDAMGEKT 119

Query: 95  RSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150
           R++Q +   GVPV P     I      +     I  P ++K   GG   G+  ++K +  
Sbjct: 120 RARQNMIQAGVPVVPGTTEPIATQEEALAYAQKIGFPVMLKAAGGGGGKGMRKVEKTEEF 179

Query: 151 PLDLLQSS-----SWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYEL 204
                 +      ++   D + IE+Y+D    +   V  D       +   +        
Sbjct: 180 DSAWRSAKSEALNAFG-NDAVYIEKYLDKPHHVEIQVFADQYGTTVHLGERECSAQRRHQ 238

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K             +  ++  ++  +A  A +A+   G    +FL D   R  ++LE+N 
Sbjct: 239 K----VVEETPSPILTPELRAQMGEVAVKAAKAVNYVGAGTVEFLVDAH-RNFYFLEMNT 293


>gi|297243387|ref|ZP_06927320.1| carbamoylphosphate synthase large subunit [Gardnerella vaginalis
           AMD]
 gi|296888634|gb|EFH27373.1| carbamoylphosphate synthase large subunit [Gardnerella vaginalis
           AMD]
          Length = 1131

 Score = 74.0 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 48/288 (16%), Positives = 106/288 (36%), Gaps = 36/288 (12%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI--------------------DVDRS-VGLV 45
           G ++E + S   G      L + G +V  +                     +D S +  +
Sbjct: 21  GQAAEFDYS---GTQACRVLREEGIRVILVNSNPATIMTDPELADATYIEPIDTSILERI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +A  +PD     L G    +  +      ILE   +    + + A     D+   K+VV 
Sbjct: 78  IAKERPDALLPTLGGQTALNAAMDLGRAGILEKYNVELIGASLEAIDRGEDRELFKKVVE 137

Query: 102 SCGVPVCPSILVNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G     S + +      +    +  P V++P      LG  +   ++ +         
Sbjct: 138 KAGAESAKSFIAHSIEEVDKIVETLGYPVVVRPSFTMGGLGSGIAHNEEELHRIAGAGIH 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
           ++  +++LIE+ ++G  E    +M DA  +V  +   ++      +   + +S  V P  
Sbjct: 198 YSPTNEVLIEEGIEGWKEFELELMRDAKDNVVVVCPIENVD---PVGVHTGDSITVAPCF 254

Query: 219 -IPLDIYKEVQRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
            +    Y++++ +     + +G   G     F  +P + ++  +E+N 
Sbjct: 255 TLTDREYQKMRDIGIAIIRGVGVDTGGCNIQFAINPQTGRIIVIEMNP 302



 Score = 56.7 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 36/233 (15%), Positives = 73/233 (31%), Gaps = 29/233 (12%)

Query: 67  LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTMDSQHLI 124
            + A L+   +P   +   A  L+ ++    +V+   G+        L      D+ H I
Sbjct: 651 SLAARLKAAGVPILGTTPEAIDLAENRELFGEVLRQEGMNAPRYGTALSLEEAKDAAHAI 710

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
             P +++P       G+ ++  D  +   + ++      D +     V G   +  ++  
Sbjct: 711 GYPVLVRPSYVLGGRGMEIVYDDAQLAKYVDRALDEARADTV-----VSGRLPSPLLIDK 765

Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK--------------IPLDIYKEVQRL 230
              D  EI V     Y     Y      HV  A               +  D  + ++  
Sbjct: 766 FLQDAIEIDV--DALYDGNELYIGGIMEHVEEAGVHSGDAACTLPPSTLSDDQIRRLREG 823

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283
                +    RG+    + F      ++ +E N +   T     P  +   G 
Sbjct: 824 TLSIARGCSVRGLINVQYAFMA--NTLYVIEANPRASRT----VPFASKATGV 870


>gi|326315608|ref|YP_004233280.1| acetyl-CoA carboxylase, biotin carboxylase [Acidovorax avenae
           subsp. avenae ATCC 19860]
 gi|323372444|gb|ADX44713.1| acetyl-CoA carboxylase, biotin carboxylase [Acidovorax avenae
           subsp. avenae ATCC 19860]
          Length = 449

 Score = 74.0 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 36/226 (15%), Positives = 82/226 (36%), Gaps = 29/226 (12%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+      +E     +      +     DK+ +KQ +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAERVEKSGFQFIGPTPESIRTMGDKVSAKQAMIRAGVPCVPGSDG 136

Query: 111 ------ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSW 160
                 + + R        +  P +IK   GG   G+ V+  + ++   +     ++ + 
Sbjct: 137 ELPDDPVQIRR----IARTVGYPVIIKAAGGGGGRGMRVVHTEAALVNAVQMTKAEAQAA 192

Query: 161 NHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK- 218
                + +E+++ +   +   ++ D   +   +            K          PA  
Sbjct: 193 FGNPAVYMEKFLQNPRHIEIQILADKHRNAVYLGERDCSMQRRHQK-----VIEEAPAPG 247

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           IP  + +++      A + IG RG    +FL+   + + +++E+N 
Sbjct: 248 IPRKLIEKIGERCVAACKKIGYRGAGTFEFLY--ENGEFYFIEMNT 291


>gi|222111046|ref|YP_002553310.1| carbamoyl-phosphate synthase l chain ATP-binding [Acidovorax ebreus
           TPSY]
 gi|221730490|gb|ACM33310.1| Carbamoyl-phosphate synthase L chain ATP-binding [Acidovorax ebreus
           TPSY]
          Length = 682

 Score = 74.0 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 43/220 (19%), Positives = 79/220 (35%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+      +E   I +      A A   DK+ SK++ +  GV   P    
Sbjct: 77  AVHPGYGFLSENEAFAKRVEEEGIVFIGPKHAAIAAMGDKIASKKLANQAGVNTIPGYND 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
            I      ++    I  P +IK   GG   G+ V   D+           ++ +    D+
Sbjct: 137 PIAGPEAAVEIAKGIGYPVMIKASAGGGGKGLRVAFNDKEAFEGFASCQNEARNSFGDDR 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE++V +   +   V+GDA  +V  +   +        K             I     
Sbjct: 197 IFIEKFVQEPRHIEIQVLGDAHGNVIYLNERECSIQRRHQK----VIEEAPSPFISDATR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K +   A    +A+G +     +F      +  ++LE+N 
Sbjct: 253 KAMGEQAVALAKAVGYQSAGTVEF-VVGKDQDFYFLEMNT 291


>gi|164659702|ref|XP_001730975.1| hypothetical protein MGL_1974 [Malassezia globosa CBS 7966]
 gi|159104873|gb|EDP43761.1| hypothetical protein MGL_1974 [Malassezia globosa CBS 7966]
          Length = 1143

 Score = 74.0 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 58/315 (18%), Positives = 108/315 (34%), Gaps = 47/315 (14%)

Query: 6   GGIS----SEREVSLSSGKACASALEDAGFKVSQIDVD---------------------R 40
           GG+S     E + S   G     AL ++G +   I+ +                      
Sbjct: 71  GGLSIGQAGEFDYS---GSQAIKALRESGIETVLINPNIATIQTSQQLASRIYFLPVSPD 127

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRS 96
            V  VL   +PD  F    G    +  V+     + E L +    S      +  D+   
Sbjct: 128 YVAYVLERERPDGVFLNFGGQSALNVGVKLDEMGVFERLGVQVLGSQPDVLRMCEDRDLF 187

Query: 97  KQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154
            Q +    +PV  S  V+  +  + +   I  P +++       LG      ++ +    
Sbjct: 188 VQALDQIQIPVARSEAVSTVKEALRAADEIGYPVIVRAAYALGGLGSGFADNEEELR--D 245

Query: 155 LQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDV-TEIAVPKSDFYSYELKYSSLNST 212
           L + S +   Q+L+E+ + G  E    V+ D   +      +   D           +S 
Sbjct: 246 LSARSLSLSPQILVEKSLRGWKESEYEVLRDQQDNALICCNMENFDPLGIHT----GDSI 301

Query: 213 HVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271
            V P++ +  D Y  ++  A    + +G  G     +   P SR+   +E+N  P ++  
Sbjct: 302 VVAPSQTLSDDNYHMLRTAALKVIRHLGIVGECNIQYALSPDSREYRVIEVN--PRLSRS 359

Query: 272 SIFPEMAAYAGYSFR 286
           S     +   GY   
Sbjct: 360 S--ALASKATGYPLA 372



 Score = 45.5 bits (107), Expect = 0.009,   Method: Composition-based stats.
 Identities = 27/174 (15%), Positives = 67/174 (38%), Gaps = 6/174 (3%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYV 129
           L+  ++    +  L    + D+ +  Q++ S GV     + V       +    ++ P +
Sbjct: 700 LKEAQVQVLGTDPLKIDSAEDRHKFSQILDSIGVDQPDWVEVTDVEKAKEFAKRVTYPVL 759

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           ++P    S   + VI  + ++  +L  ++  N    +++ +++   +    +  DA    
Sbjct: 760 VRPSYVLSGAAMNVIWDETTLEHNLTAAAQVNTDYPVVLTKFIPNAQE---IDIDAVAHK 816

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRG 242
            ++ V     +       S ++T VLP   +P      ++ +A     A    G
Sbjct: 817 GKLLVHAVSQHVENAGVHSGDATLVLPPFSLPSQDMARLKDIAERVAAAFEISG 870


>gi|160896942|ref|YP_001562524.1| acetyl-CoA carboxylase, biotin carboxylase [Delftia acidovorans
           SPH-1]
 gi|160362526|gb|ABX34139.1| acetyl-CoA carboxylase, biotin carboxylase [Delftia acidovorans
           SPH-1]
          Length = 454

 Score = 74.0 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 36/226 (15%), Positives = 81/226 (35%), Gaps = 29/226 (12%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+      +E     +            DK+ +KQ +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAERVEKSGFTFIGPTPENIRTMGDKVSAKQAMIKAGVPCVPGSDG 136

Query: 111 ------ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSW 160
                 + + R        +  P +IK   GG   G+ V+  + ++   +     ++ + 
Sbjct: 137 ELPDDPVQIRR----IAKAVGYPVIIKAAGGGGGRGMRVVHTEAALINAVQMTKAEAGAA 192

Query: 161 NHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK- 218
                + +E+++ +   +   ++ D   +   +            K          PA  
Sbjct: 193 FGNPAVYMEKFLQNPRHVEIQILADNHRNAVYLGERDCSMQRRHQK-----VIEEAPAPG 247

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           IP  + +++      A + +G RG    +FLF   + + +++E+N 
Sbjct: 248 IPRRLVEKIGERCAAACKKLGYRGAGTFEFLF--ENGEFYFIEMNT 291


>gi|59800511|ref|YP_207223.1| acetyl-CoA carboxylase, biotin carboxylase [Neisseria gonorrhoeae
           FA 1090]
 gi|293397758|ref|ZP_06641964.1| acetyl-CoA carboxylase, biotin carboxylase [Neisseria gonorrhoeae
           F62]
 gi|59717406|gb|AAW88811.1| acetyl-CoA carboxylase, biotin carboxylase [Neisseria gonorrhoeae
           FA 1090]
 gi|291611704|gb|EFF40773.1| acetyl-CoA carboxylase, biotin carboxylase [Neisseria gonorrhoeae
           F62]
          Length = 453

 Score = 74.0 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 81/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         L  DK+ +K  + + GVP  P    
Sbjct: 77  AVHPGYGFLAENADFAEQVEQSGFTFIGPKPDTIRLMGDKVSAKHAMIAAGVPCVPGSDG 136

Query: 112 LVNRFTMD---SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
            +     +       +  P +IK   GG   G+ V++K + +   +     ++ +     
Sbjct: 137 ALPDDDAEILKIADKVGYPVIIKASGGGGGRGMRVVEKKEDLLQSVEMTKAEAGAAFGNP 196

Query: 165 QLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+Y+     +   V+ D   +   +A          L+          PA  I   
Sbjct: 197 MVYMERYLQRPRHVEIQVLADEHGNAVYLAE-----RDCSLQRRHQKVIEEAPAPFIDEK 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             K++ +    A + IG RG    +FL+     + F++E+N 
Sbjct: 252 ARKKIGKACTDACKRIGYRGAGTFEFLY--EDGEFFFIEMNT 291


>gi|315084350|gb|EFT56326.1| carbamoyl-phosphate synthetase large chain, oligomerisation domain
           protein [Propionibacterium acnes HL027PA2]
          Length = 590

 Score = 74.0 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 46/268 (17%), Positives = 99/268 (36%), Gaps = 30/268 (11%)

Query: 25  ALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNVLHGNFG 63
           AL++ G++V  ++        DR V                +L   +PD     L G  G
Sbjct: 36  ALKEEGYEVILVNSNPATIMTDRDVADKVYIEPITLEFVSSILRRERPDAIVPTLGGQTG 95

Query: 64  EDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
            +   +     IL+ L I    +   A   + D+   KQ++   G PV  S +V+     
Sbjct: 96  LNMATELAKSGILDELGIELLGTKPSAIEKAEDRDLFKQLMDELGQPVPASEVVHTVDEA 155

Query: 120 SQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IE 176
            +  + I  P +++P       G  +   +  +   + +    +   + LIEQ + G  E
Sbjct: 156 VKVGNTIGYPLIVRPAYTLGGTGGGMCCDEAELVRIVGKGLELSPVTECLIEQSIAGFKE 215

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +   +M D + +   + V   + +     ++  +        +    ++ ++  +    +
Sbjct: 216 IEYEMMRDGADNT--MVVCTMENFDPVGVHTGDSIVFAPTQTLTDVEHEMLRDASIEIVR 273

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +G  G        DP S + + +E+N 
Sbjct: 274 TLGIEGGCNVQLALDPNSFQYYVIEVNP 301


>gi|161510953|ref|YP_089428.2| carbamoyl phosphate synthase large subunit [Mannheimia
           succiniciproducens MBEL55E]
          Length = 1070

 Score = 74.0 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 50/278 (17%), Positives = 101/278 (36%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +              DV        ++V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYKVVLVNSNPATIMTDPNMADVTYIEPIHWQTVEKIIEKERPDAILP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      +L+   +    +   A   + D+ R K+ ++  G+    S +
Sbjct: 89  TMGGQTALNCALDLSKNGVLKKYGVELIGATEDAIDKAEDRGRFKEAMAKIGLNTPKSFV 148

Query: 113 VNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            + F     +Q  +  P +I+P       G  +            +    +   +LLIEQ
Sbjct: 149 CHSFDEAWKAQEEVGFPTLIRPSFTMGGSGGGIAYNRDEFQAICERGFEASPTHELLIEQ 208

Query: 171 YVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            V G  E    V+ D + + +   ++   D           +S  V PA+ +    Y+ +
Sbjct: 209 SVLGWKEYEMEVVRDKADNCIIVCSIENFDPMGVHT----GDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RNASLAVLREIGVDTGGSNVQFAINPENGEMIVIEMNP 302



 Score = 62.8 bits (152), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 35/262 (13%), Positives = 97/262 (37%), Gaps = 27/262 (10%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH-----GNFGEDG---- 66
           AL ++GF+   +         D D S  L    L  +    ++H     G     G    
Sbjct: 582 ALRESGFETIMVNCNPETVSTDFDTSDRLYFEPLTLEDVLEIIHVEKPWGVIVHYGGQTP 641

Query: 67  -LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHL 123
             +   L    +    +   +   + D+ R ++++    +    +      +  +   + 
Sbjct: 642 LKLANALHANGVNIIGTSADSIDAAEDRERFQKILHDLNLKQPANRTARNTQEAVGLANE 701

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVM 182
           +  P V++P        + ++  D+ +   + ++ S ++   +L++ ++ + IE+    +
Sbjct: 702 VGYPLVVRPSYVLGGRAMQIVYNDEELNRYMREAVSVSNDSPILLDHFLNNAIEVDVDCI 761

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  ++  + P  + ++I  E++R      +A+   G
Sbjct: 762 CDGEQVIIGGIMQHIEQAGI---HSGDSACSLPPYSLSMEIQDEIRRQTAAMARALNVVG 818

Query: 243 ISRSDFLFDPLSRKVFWLEINV 264
           +    F     +  ++ LE+N 
Sbjct: 819 LMNVQFAV--QNDVIYVLEVNP 838


>gi|148263921|ref|YP_001230627.1| carbamoyl-phosphate synthase, large subunit [Geobacter
           uraniireducens Rf4]
 gi|146397421|gb|ABQ26054.1| carbamoyl-phosphate synthase large subunit [Geobacter
           uraniireducens Rf4]
          Length = 1082

 Score = 74.0 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 52/278 (18%), Positives = 103/278 (37%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVDRS------------VGLVLAHLKPDLAFN 56
           SG     AL++ GF+V  +         D D +            + +++   +PD    
Sbjct: 29  SGTQACKALKEEGFQVVLLNSNPATIMTDPDFADRTYIEPVTPEILAMIIEKERPDAVLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G    +  V      +LE   +    + + A  ++ D+   K+ +    + V  S L
Sbjct: 89  TLGGQTALNTAVAVAESGVLEKYGVELIGAKLPAIKMAEDRTLFKEAMQRINLTVPRSGL 148

Query: 113 VNRF--TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     M+    I  P +I+P       G  +    +      +     +   ++LIE+
Sbjct: 149 AHNHAEAMEIIKEIGFPAIIRPSFTLGGTGGGIAYNMEEYEKMSVAGIEASPTSEILIEE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            V G  E    VM D + +V  I   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SVIGWKEYELEVMRDTADNVVIICSIEN----FDPMGVHTGDSITVAPAQTLTDKEYQIL 264

Query: 228 QRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P   ++  +E+N 
Sbjct: 265 RDASLKIIREIGVDTGGSNIQFGINPRDGRLVVIEMNP 302



 Score = 64.4 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 46/290 (15%), Positives = 104/290 (35%), Gaps = 31/290 (10%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ------ 69
           AL + G++   +         D D S  L    L  +   N++     E  +VQ      
Sbjct: 598 ALAEDGYETIMVNCNPETVSTDYDTSDRLYFEPLTYEDVLNIVELEKPEGVIVQFGGQTP 657

Query: 70  ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--QHL 123
                 LE   +P   +   A   + D+ R ++++   G+    +     F         
Sbjct: 658 LKLAVSLEKAGVPIIGTSPDAIDRAEDRERFQEMLHKLGLRQPENGTARSFEEAEKVADR 717

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVM 182
           I  P V++P        + ++    ++   +  +   +    +LI++++D  IE+    +
Sbjct: 718 IGYPVVVRPSYVLGGRAMEIVYDVDNLRRYMHTAVQASPEHPILIDKFLDEAIEIDVDAL 777

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D +  V    +   +       +S  ++  + P  I  +I  E++R   +    +  RG
Sbjct: 778 CDGTEAVIGGIMEHIEEAGI---HSGDSACSLPPYSISREIADEIRRQTKMMALELNVRG 834

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +   +  +      ++ LE+N +   T     P ++   G    +L   +
Sbjct: 835 L--MNVQYAIKDDVIYILEVNPRASRTA----PFVSKATGRPLAKLAARI 878


>gi|254517399|ref|ZP_05129456.1| acetyl-CoA carboxylase, biotin carboxylase [gamma proteobacterium
           NOR5-3]
 gi|219674237|gb|EED30606.1| acetyl-CoA carboxylase, biotin carboxylase [gamma proteobacterium
           NOR5-3]
          Length = 447

 Score = 74.0 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 39/222 (17%), Positives = 78/222 (35%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+      +E     +         L  DK+ +K  + +  VP  P    
Sbjct: 77  AIHPGYGFLAENADFAEQVEQSGFIFIGPRSETIRLMGDKVSAKDAMKAANVPTVPGSDG 136

Query: 111 -ILVNRFTM-DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGD 164
            +  +   M +    +  P +IK   GG   G+ V+  + ++   +     ++ +    D
Sbjct: 137 PLPDDPAEMIEIGRQVGYPVIIKAAAGGGGRGMRVVHNEAALVNSVQITKSEALAAFGSD 196

Query: 165 QLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+Y+     +   V+ D + +               L+          PA  I   
Sbjct: 197 VVYMEKYLQRPRHVEIQVIADGNGNAI-----HLGDRDCSLQRRHQKVIEEAPAPGIDPQ 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              +V      A Q IG RG    +FL+       +++E+N 
Sbjct: 252 ARADVAAACVKACQEIGYRGAGTFEFLY--EDGGFYFIEMNT 291


>gi|134095926|ref|YP_001101001.1| acetyl CoA carboxylase, biotin carboxylase subunit [Herminiimonas
           arsenicoxydans]
 gi|133739829|emb|CAL62880.1| Biotin carboxylase (Acetyl-CoA carboxylase subunit A) (ACC)
           [Herminiimonas arsenicoxydans]
          Length = 456

 Score = 74.0 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/222 (15%), Positives = 80/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +      +  +  DK+ +KQ +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAERVEQSGFVFIGPRSESIRMMGDKVTAKQTMIKAGVPCVPGSDG 136

Query: 112 ---LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHG 163
                 +  + +   +  P +IK   GG   G+ V+  + ++   +        S++   
Sbjct: 137 ALPDDPKEIIQTARKVGYPVIIKAAGGGGGRGMRVVHTEAALLNAVTMTKTEAGSAFG-N 195

Query: 164 DQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD 222
            ++ +E+Y++    +   ++ D   +   +            K             IP  
Sbjct: 196 PEVYMEKYLENPRHVEIQILADEHKNAIWLGERDCSMQRRHQKVL----EEAPAPGIPRK 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             + +      A + +G RG    +FL+   + + +++E+N 
Sbjct: 252 TIERIGDRCAEACRKMGYRGAGTFEFLY--ENGEFYFIEMNT 291


>gi|313158536|gb|EFR57930.1| carbamoyl-phosphate synthase, large subunit [Alistipes sp. HGB5]
          Length = 1060

 Score = 74.0 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 44/282 (15%), Positives = 98/282 (34%), Gaps = 38/282 (13%)

Query: 26  LEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH---------GNFGEDGL 67
           + +AG++   I         D   S  L    L  +   NV+H            G+  +
Sbjct: 578 IREAGYEAIIINNNPETVSTDYTTSDKLYFEPLMVEDVMNVIHLEKPKAIVVSLGGQTAI 637

Query: 68  -VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQHLI 124
            +   L  L +P   +   A   + D+   ++++    +P   +  V      + +   I
Sbjct: 638 NLAEPLSRLGVPIIGTDCEAIRNAEDRGCFEKIMEELRIPQPEAEAVTDIESGVKAAARI 697

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
             P +++P        + ++  ++ +   L  +   N    +L+++Y+ G EL    + D
Sbjct: 698 GYPVLVRPSYVLGGRAMQIVSNEERLRHYLQTAVEVNDDSPVLVDRYIMGKELEVDAICD 757

Query: 185 AS---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGC 240
                +      V ++  +S        +S  V P   +      ++          IG 
Sbjct: 758 GKDVFIPGIMEHVERTGIHS-------GDSISVYPTFSVSQKAKDKIIDYTVKLGLRIGI 810

Query: 241 RGISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277
            G+    F+ D    +V+ +E+N       P ++  +  P  
Sbjct: 811 IGLYNIQFILDGND-EVYVIEVNPRSSRTVPFLSKSTGVPMA 851



 Score = 69.8 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 48/269 (17%), Positives = 101/269 (37%), Gaps = 32/269 (11%)

Query: 25  ALEDAGFKVSQIDVDRSVGLVLAHL---------------------KPDLAFNVLHGNFG 63
           AL++ G++V  ++ + +  +   H+                     +PD     L G  G
Sbjct: 36  ALKEEGYEVILVNSNPATIMTDTHIADKVYMEPLTLEYVAKIIRFERPDAIVPGLGGQTG 95

Query: 64  EDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
            +  VQ     IL+  ++    +   +   + D+   K++  S G PV  S +       
Sbjct: 96  LNLAVQLAKKGILKECQVEILGTSFESIERAEDRELFKELCESLGEPVIESKIAMSVEEA 155

Query: 120 SQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IE 176
            +    I  P V++P       G      ++ +   +  +   +   Q+L+E+ + G  E
Sbjct: 156 VEVAAEIGYPVVLRPAYTLGGTGGGFADNEEQLREMMRHALFLSPVHQVLVEKSIKGYKE 215

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAH 235
           +   VM D +     I   ++      +   + +S  V P + +    ++ ++  A    
Sbjct: 216 IEFEVMRDHNDTAISICCMEN---IDPVGVHTGDSIVVAPCQTLTNKEFQMLRDSALKII 272

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +   G     F  DPLS K + +E+N 
Sbjct: 273 RELKIEGGCNVQFALDPLSFKYYLIEVNP 301


>gi|88859257|ref|ZP_01133897.1| urea carboxylase (alpha subunit) [Pseudoalteromonas tunicata D2]
 gi|88818274|gb|EAR28089.1| urea carboxylase (alpha subunit) [Pseudoalteromonas tunicata D2]
          Length = 656

 Score = 74.0 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 75/221 (33%), Gaps = 20/221 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+           I +      A      K RSK+++++  VP+ P    
Sbjct: 77  CIHPGYGFLSENDQFAEACAKNNIVFIGPPAAAITAMGSKSRSKEIMAAANVPLVPGYYG 136

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGDQ 165
                +        I  P +IK   GG   G+ V++      L L     ++ +    D 
Sbjct: 137 QNQDPEFLKQEAIKIGFPVLIKAAFGGGGKGMRVVEHADEFQLALQGAQREAIAGFGNDL 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           +L+E+YV     +   V  D+      +           L+          PA  +   +
Sbjct: 197 VLLERYVTKPRHVEVQVFADSHGHCVYL-----GDRDCSLQRRHQKVIEEAPAPMLSDSL 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            K +   A    QAI   G    +FL        F++E+N 
Sbjct: 252 RKAMGEAAVRCAQAINYVGAGTVEFLL--CGNDFFFMEMNT 290


>gi|299768738|ref|YP_003730764.1| 3-methylcrotonyl-CoA carboxylase alpha subunit [Acinetobacter sp.
           DR1]
 gi|298698826|gb|ADI89391.1| 3-methylcrotonyl-CoA carboxylase alpha subunit [Acinetobacter sp.
           DR1]
          Length = 646

 Score = 74.0 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/198 (16%), Positives = 69/198 (34%), Gaps = 14/198 (7%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD----SQHLISPPYVIK 131
           +I +      A  L   K  SK  +   GVP  P    +R  ++        +  P ++K
Sbjct: 100 QITFIGPTASAIELMGSKRLSKIAMIEAGVPCVPGYEGDRQDLEYLAAQAEQVGFPIMVK 159

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSS-----SWNHGDQLLIEQYVDGIELTCGVMGDAS 186
              GG   G+ ++++   +   L  +      ++  G+ +L +  +    +   V GD  
Sbjct: 160 ASAGGGGRGMRLVQQASELVEALQTARSEAENAFGSGELILEKAVIAPRHVEIQVFGDTH 219

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRS 246
            +   +            K             +  ++ +++   A  A +A    G    
Sbjct: 220 GNYVYLFERDCSIQRRHQK----VVEEAPCPVMTPELRQKMGEAAVAAAKACAYVGAGTV 275

Query: 247 DFLFDPLSRKVFWLEINV 264
           +FL D      ++LE+N 
Sbjct: 276 EFLLDAS-GAFYFLEMNT 292


>gi|269928728|ref|YP_003321049.1| acetyl-CoA carboxylase, biotin carboxylase [Sphaerobacter
           thermophilus DSM 20745]
 gi|269788085|gb|ACZ40227.1| acetyl-CoA carboxylase, biotin carboxylase [Sphaerobacter
           thermophilus DSM 20745]
          Length = 467

 Score = 74.0 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 39/219 (17%), Positives = 73/219 (33%), Gaps = 17/219 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+    A      I +      A     DK  ++Q+    GVPV P    
Sbjct: 100 AIHPGYGFLAENADFAAACAEAGITFVGPSAEAIRRLGDKAAARQIAIDAGVPVVPGSDG 159

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGDQ 165
           ++      D    +  P +IK   GG   GI ++ + +  P  L        +++ +   
Sbjct: 160 VVDPEHAADEAARLGYPVMIKAAAGGGGQGIRIVDRPEDFPEALEAAQREARAAFGNDAI 219

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
            L  + +    +   V+ D    V  +   +        K             +  D  +
Sbjct: 220 YLERRLIHPRHIEVQVLADHHGTVVHLFERECSLQRRRQKVL----EEAPSPALDQDTRE 275

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           ++   A    QA+G       +FL D      +++E N 
Sbjct: 276 QMTTAAVRLAQAVGYTNAGTFEFLVDQ--NGFYFIEANT 312


>gi|198282925|ref|YP_002219246.1| carbamoyl-phosphate synthase large subunit [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218666972|ref|YP_002425128.1| carbamoyl-phosphate synthase, large subunit [Acidithiobacillus
           ferrooxidans ATCC 23270]
 gi|198247446|gb|ACH83039.1| carbamoyl-phosphate synthase, large subunit [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218519185|gb|ACK79771.1| carbamoyl-phosphate synthase, large subunit [Acidithiobacillus
           ferrooxidans ATCC 23270]
          Length = 1079

 Score = 74.0 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 47/278 (16%), Positives = 98/278 (35%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G +V  +              D         ++V  ++A  +PD    
Sbjct: 29  SGVQACKALREEGCRVILVNSNPATIMTDAQTADATYIEPVEWQTVARIIAMERPDAILP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +    + +LE   +    + + A   + D+   K+ +   G+ V  S  
Sbjct: 89  TMGGQTALNCALDLHREGVLEQYGVKLIGASVEAIREAEDRGLFKKAMEEIGLEVARSAF 148

Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +      Q    I  P +I+P       G  +    +       +    +   ++LIE+
Sbjct: 149 GHDMEGARQIAEDIGFPVIIRPSFTLGGTGGGIAYNREEFEDIAARGLEASPTHEILIEE 208

Query: 171 YVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + + +   ++   D           +S  V PA+ +    Y+ +
Sbjct: 209 SIIGWKEFEMEVVRDRADNCIIVCSIENFDPMGIHT----GDSITVAPAQTLTDREYQRM 264

Query: 228 QRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P   ++  +E+N 
Sbjct: 265 RDASIAVLRRIGVDTGGSNVQFAVNPEDGRLIVIEMNP 302



 Score = 66.3 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 28/196 (14%), Positives = 80/196 (40%), Gaps = 7/196 (3%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--FTMDSQHLISPPYV 129
           LE   +P   +   +  L+ D+ R +Q++    +    + +       +     +  P V
Sbjct: 652 LEAAGVPIIGTTPDSIDLAEDRERFQQLLQRLDLRQPENAIARSAPEALSKARALGYPLV 711

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  +  +   +L++   ++   +L+++++ D +E+    + D+   
Sbjct: 712 VRPSYVLGGRAMRIVYGEDDLQRYMLEAVRISNDQPILLDRFLNDALEVDVDAVADSGQQ 771

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           V    + +    +    +S  ++  + P  +   I  E++R       A+G  G+    F
Sbjct: 772 VIVAGIMEHIEQAGV--HSGDSACCLPPYSLSPAIQDEIRRQTVELALALGVVGLMNCQF 829

Query: 249 LFDPLSRKVFWLEINV 264
                + +++ LE+N 
Sbjct: 830 AV--QNERIYVLEVNP 843


>gi|163854880|ref|YP_001629178.1| acetyl-CoA carboxylase biotin carboxylase subunit [Bordetella
           petrii DSM 12804]
 gi|163258608|emb|CAP40907.1| unnamed protein product [Bordetella petrii]
          Length = 448

 Score = 74.0 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/222 (15%), Positives = 82/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         L  DK+ +K+ +   GVPV P    
Sbjct: 77  AIHPGYGFLSENADFAERVEKSGFVFIGPRPETIRLMGDKVSAKRAMIEAGVPVVPGSEG 136

Query: 112 LVNRFTMD---SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
            +     +       +  P +IK   GG   G+ V+  + ++   +     ++ +  +  
Sbjct: 137 ALPDDPQEILRVAREVGYPVIIKAAGGGGGRGMRVVYTEAALLNAVTMTRSEAGAAFNNP 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
           ++ +E++++    +   ++ D   +   +            K          PA  I   
Sbjct: 197 EVYMEKFLENPRHVEIQILADGGRNAVWLGERDCSMQRRHQK-----VIEEAPAPGIARR 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + + +      A + +G RG    +FL+   + + +++E+N 
Sbjct: 252 LIERIGDRCADACRKMGYRGAGTFEFLY--ENGEFYFIEMNT 291


>gi|163786846|ref|ZP_02181294.1| biotin carboxylase, subunit of acetyl CoA carboxylase
           [Flavobacteriales bacterium ALC-1]
 gi|159878706|gb|EDP72762.1| biotin carboxylase, subunit of acetyl CoA carboxylase
           [Flavobacteriales bacterium ALC-1]
          Length = 450

 Score = 74.0 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 77/221 (34%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     I E   I +  +         DK  +K  + + GVP  P    
Sbjct: 77  AIHPGYGFLSENAKFSKICEEHGIKFIGASEEMIDRMGDKANAKSTMIAAGVPCVPGSEG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS-----SSWNHGD 164
            I               P ++K   GG   G+  + K   +      +     +++ + D
Sbjct: 137 VIETFEDCKKIAKETGYPVMLKASAGGGGKGMRAVWKAADLQDAWESARTESKAAFGNDD 196

Query: 165 QLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
             + E+ ++    +   ++GD+S     ++           K     +  V    +   +
Sbjct: 197 MYM-EKLIEEPRHIEIQIVGDSSGKACHLSERDCSVQRRHQK----LTEEVPSPFMTDKL 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             ++ + A  A + I   G    +FL D   R  +++E+N 
Sbjct: 252 RDKMGKAAVKAAEYIKYEGAGTVEFLVDKH-RNFYFMEMNT 291


>gi|150024514|ref|YP_001295340.1| phosphoribosylglycinamide formyltransferase 2 [Flavobacterium
           psychrophilum JIP02/86]
 gi|172048602|sp|A6GWP9|PURT_FLAPJ RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|149771055|emb|CAL42522.1| Phosphoribosylglycinamide formyltransferase 2 [Flavobacterium
           psychrophilum JIP02/86]
          Length = 386

 Score = 74.0 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 45/254 (17%), Positives = 85/254 (33%), Gaps = 35/254 (13%)

Query: 31  FKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
           F+V  +     +  ++A  +PD     +     E           E       ++ SA +
Sbjct: 44  FEVINMLDGSELDRIVAKHQPDFIVPEIEAIRTE--------RFYEYEKQGITVVPSAKA 95

Query: 91  MD-----KMRSKQVVSSCGVPVCPSILVNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIV 143
            +     K          G+               +    +  P V+KPL   S  G   
Sbjct: 96  ANFTMNRKAIRDLAAKELGLKTANYRYATSAEELQKGVQAVGMPCVVKPLMSSSGKGQST 155

Query: 144 IKKDQSIPLDLLQSSSWNHGD--QLLIEQYVDGIE----LTCGVMGDASLDVTEIAVPKS 197
           IK  + I      +   + GD  ++++E +V        LT     + +L    I   + 
Sbjct: 156 IKTVEDIEKAWNYAVEGSRGDVVEVIVEAFVKFNSEITLLTVAQNNNPTLFCAPIG-HRQ 214

Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
           +   Y+  +         PA+I      E Q +A    +A+G  G+   +F        V
Sbjct: 215 ERGDYQESWQ--------PARISDKDLHEAQDMARKVTEALGGAGLFGVEFFLTNDG--V 264

Query: 258 FWLEINVQP---GM 268
           ++ E++ +P   GM
Sbjct: 265 YFSELSPRPHDTGM 278


>gi|71282292|ref|YP_268342.1| methylcrotonyl-CoA carboxylase subunit alpha [Colwellia
           psychrerythraea 34H]
 gi|71148032|gb|AAZ28505.1| methylcrotonyl-CoA carboxylase, alpha subunit [Colwellia
           psychrerythraea 34H]
          Length = 681

 Score = 74.0 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/199 (16%), Positives = 71/199 (35%), Gaps = 16/199 (8%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD----SQHLISPPYVIK 131
            I +    + A      K  +K ++    VP+ P    +  + D    +   +  P ++K
Sbjct: 99  NITFIGPPVAAIEAMGSKSAAKNIMEKADVPLVPGYHGDDQSRDIIKKAADDMGYPVLLK 158

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQLLIEQYVD-GIELTCGVMGDAS 186
              GG   G+  +  +      L  +          D +L+E+Y+     +   V  D  
Sbjct: 159 ATAGGGGKGMRQVWSEAEFDEGLAAAKREAMSSFGDDTMLVEKYLTQPRHVEIQVFCDNH 218

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISR 245
            +   +           ++          PA  +  ++  ++   A  + QAIG +G   
Sbjct: 219 ENAVYL-----FERDCSVQRRHQKVIEEAPAFSMSEELRAQMGESAIKSAQAIGYQGAGT 273

Query: 246 SDFLFDPLSRKVFWLEINV 264
            +FL D +    +++E+N 
Sbjct: 274 VEFLLD-IDGSFYFMEMNT 291


>gi|300123093|emb|CBK24100.2| Biotin carboxylase [Blastocystis hominis]
          Length = 338

 Score = 74.0 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 45/255 (17%), Positives = 93/255 (36%), Gaps = 32/255 (12%)

Query: 34  SQIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALS 90
             +D+D+ +  +  + K D     +H  +G   E+       +   I +         L 
Sbjct: 59  VFLDIDK-IIEIAKNNKVD----AIHPGYGFLSENPEFPKRCKENGIKFVGPSYETMRLL 113

Query: 91  MDKMRSKQVVSSCGVPVCPSIL----VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
             K  +K++   CG+P  P            ++  + I  P ++K   GG   G+ ++  
Sbjct: 114 SSKKDAKELAQRCGIPTIPGYSGSDQSTARLLEEINKIGYPVLLKASMGGGGRGMRILSD 173

Query: 147 DQSIPLDLL------QSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDF 199
             S  L  +      ++        LL+E+++     +   V GD+  DV ++   +   
Sbjct: 174 SNSNQLAEIISSCRNEAEKHFGDGHLLLEKFLPRTRHIEIQVFGDSHGDVVQLGERE--- 230

Query: 200 YSYELKYS--SLNSTHVLP--------AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
            S + +Y      S  V P          +  +    +   A    Q     G +  +FL
Sbjct: 231 CSLQRRYQKLIEESPCVSPFLLFSHLQFYLSDEERSRLYSWALTLTQQSHYEGAATVEFL 290

Query: 250 FDPLSRKVFWLEINV 264
            D  +R+ +++E+N 
Sbjct: 291 CDAATRRFYFMEVNT 305


>gi|297530997|ref|YP_003672272.1| carbamoyl-phosphate synthase, large subunit [Geobacillus sp.
           C56-T3]
 gi|297254249|gb|ADI27695.1| carbamoyl-phosphate synthase, large subunit [Geobacillus sp.
           C56-T3]
          Length = 1042

 Score = 74.0 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 57/287 (19%), Positives = 109/287 (37%), Gaps = 35/287 (12%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQIDVD---------------------RSVGLV 45
           G ++E + S   G     AL++ G++V  ++ +                      +V  +
Sbjct: 21  GQAAEFDYS---GTQACIALKEEGYRVILVNNNPATIMTDEVHADAVYFEPLTVDAVEAI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +A  +PD       G  G +   Q     +LE   +    + I A     D+   + ++ 
Sbjct: 78  IAKERPDGLLATFGGQTGLNLAFQLHEAGVLEKYGVRLLGTPIEAIKRGEDREAFRALMH 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G PV  S +V      +     I  P +I+P       G  + +  +     + +  +
Sbjct: 138 ELGEPVPESEIVTSVEEAVAFAEQIGFPIIIRPAYTLGGTGGGIAENMEQFLALVEKGLA 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   Q LIE+ V G  E+   VM D     T I V   +     +   + +S  V P++
Sbjct: 198 ESPIRQCLIERSVAGFKEIEYEVMRDQ--SNTCITVCNMENVD-PVGIHTGDSIVVAPSQ 254

Query: 219 -IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +  + Y+ ++  A     A+G  G     F  DP S++ + +E+N 
Sbjct: 255 TLTDEEYQMLRSSAVKIISALGIIGGCNIQFALDPNSKQYYLIEVNP 301



 Score = 67.5 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 40/228 (17%), Positives = 86/228 (37%), Gaps = 22/228 (9%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYV 129
           LE   +P             D+ R  Q++    +P  P ++ N           I  P +
Sbjct: 650 LEEAGVPLLGVTYDMIDQLEDRDRFYQLLEELDIPHVPGLMANNAQELAAKAAEIGCPVL 709

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS--- 186
           ++P       G+ ++  +  + + L++     +   +LI+ Y+DG E    +  D +   
Sbjct: 710 LRPSYVIGGRGMFIVHSEAQL-VALIEQGELTY--PILIDAYLDGKEAEADIATDGTDIL 766

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISR 245
           L      V K+  +S        +S   LPA+ +  +   ++   A    + +G +GI  
Sbjct: 767 LPTIIEHVEKAGVHS-------GDSYAWLPAQTLTDEEKAKIIDYAGRIAKKLGFKGIMN 819

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
             ++       V+ LE+N +   T     P ++   G    ++   ++
Sbjct: 820 IQYVI--ADGNVYVLEVNPRASRT----VPIVSKTTGVPLAQIATKLL 861


>gi|297616613|ref|YP_003701772.1| acetyl-CoA carboxylase, biotin carboxylase [Syntrophothermus
           lipocalidus DSM 12680]
 gi|297144450|gb|ADI01207.1| acetyl-CoA carboxylase, biotin carboxylase [Syntrophothermus
           lipocalidus DSM 12680]
          Length = 452

 Score = 74.0 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 45/220 (20%), Positives = 84/220 (38%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---- 109
            +H  +G   E+     + E  +I +   G  A     DK+R++++V   GVPV P    
Sbjct: 79  AIHPGYGFLAENAYFAEMCETCDIKFIGPGSKAINAMGDKIRAREMVKKVGVPVVPGSEG 138

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
           ++   R  ++  + I  P +IK   GG   G+ +    + +   L  + +          
Sbjct: 139 AVKDLRQALELANEIGYPVLIKAASGGGGRGMRLAHNPKDMEKALATAQAEAQAAFGDGS 198

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+Y++    +   V+GD   D+  +            K             I  +  
Sbjct: 199 VYIEKYIEEPRHIEIQVLGDEQGDLVYLGERDCSIQRRNQKLL----EEAPSIFINEETR 254

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K +   A LA +A G       +FL D      +++E+N 
Sbjct: 255 KRMGETAVLAARAAGYCSAGTVEFLVDKHHN-FYFIEMNT 293


>gi|319784533|ref|YP_004144009.1| carbamoyl-phosphate synthase L chain ATP-binding protein
           [Mesorhizobium ciceri biovar biserrulae WSM1271]
 gi|317170421|gb|ADV13959.1| Carbamoyl-phosphate synthase L chain ATP-binding protein
           [Mesorhizobium ciceri biovar biserrulae WSM1271]
          Length = 660

 Score = 74.0 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 37/204 (18%), Positives = 71/204 (34%), Gaps = 19/204 (9%)

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM----DSQHLISPPYVI 130
             + +      +      K  +K+++   GVPV P        +         I  P +I
Sbjct: 98  AGLIFIGPSAASIRAMGLKDAAKRLMEKAGVPVVPGYHGEAQEIVLLASKAREIGYPVLI 157

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGDQLLIEQYVD-GIELTCGVMGDA 185
           K   GG   G+  ++        L     ++ +    D++L+E+YVD    +   V GD 
Sbjct: 158 KARAGGGGKGMRRVEHPDEFSEALSSARREAKAAFGDDRVLVEKYVDKPRHVEVQVFGDN 217

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGIS 244
             +V  +            +          PA  +   + K +   A  A +AI   G  
Sbjct: 218 LGNVVHLYE-----RDCSAQRRHQKVIEESPAPGMTPALRKAMTEAAVKAAKAINYSGAG 272

Query: 245 RSDFLFDPLSR----KVFWLEINV 264
             +F+ D        + +++E+N 
Sbjct: 273 TIEFIVDASQGLKADRFWFMEMNT 296


>gi|296120075|ref|ZP_06838629.1| pyruvate carboxylase [Corynebacterium ammoniagenes DSM 20306]
 gi|295967229|gb|EFG80500.1| pyruvate carboxylase [Corynebacterium ammoniagenes DSM 20306]
          Length = 1143

 Score = 74.0 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/234 (14%), Positives = 70/234 (29%), Gaps = 16/234 (6%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
             V         D  +   +G   E   +    E   I +         L+ DK  + + 
Sbjct: 72  DEVIRAAKKSGADAVYPG-YGFLSERAELARACEAEGIKFIGPSAETLDLTGDKAAAVEA 130

Query: 100 VSSCGVPVC---PSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-- 154
            ++ G+P      +        ++      P   K L GG   G+  I+  +     +  
Sbjct: 131 ATAAGLPTLHDSKASTDVEELYEASKDFEYPMFAKALAGGGGRGMRFIENGKEFKERVAE 190

Query: 155 ---LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
                 +++  G   L    +    +   ++ D   +V              ++      
Sbjct: 191 ASREAEAAFGDGRVYLETAVIKPQHIEVQILADGKGNVM-----HLFERDCSVQRRHQKV 245

Query: 212 THVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             + PA  +  ++   + + A    + I   G    +FL D     VF  E+N 
Sbjct: 246 VEIAPAPYLDPELRDRICQDAVNFCKHIKYEGAGTVEFLVDERGNHVFI-EMNP 298


>gi|254424145|ref|ZP_05037863.1| carbamoyl-phosphate synthase, large subunit [Synechococcus sp. PCC
           7335]
 gi|196191634|gb|EDX86598.1| carbamoyl-phosphate synthase, large subunit [Synechococcus sp. PCC
           7335]
          Length = 1070

 Score = 74.0 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 56/279 (20%), Positives = 102/279 (36%), Gaps = 36/279 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D D              +  V+   +PD    
Sbjct: 19  SGTQACKALREEGYEVVLVNSNPATIMTDPDIADRTYIEPLTADLLEQVIVRERPDALLP 78

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G    +  V+     +L+   +    + + A   + D+   K+ +   GV VCPS  
Sbjct: 79  TMGGQTALNLAVELAKCGVLDKYGVELIGAKLEAIEKAEDRKLFKEAMLKIGVGVCPSGL 138

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
              ++     +Q + S P +I+P       G  +    +            +   Q+LIE
Sbjct: 139 AETMDESWEINQQIGSYPLIIRPAFTMGGSGGGIAYNKEEFETICRSGLEASPVSQILIE 198

Query: 170 QYVDG-IELTCGVMGDASLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPAK-IPLDIYKE 226
           Q + G  E    VM D + +V  I   ++ D           +S  V PA+ +    Y+ 
Sbjct: 199 QSLLGWKEYELEVMRDLADNVVIICSIENIDPMGVHT----GDSITVAPAQTLTDKEYQR 254

Query: 227 VQRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           ++  +    + IG   G S   F  +P +  V  +E+N 
Sbjct: 255 LRDASIKIIREIGVETGGSNIQFSVNPDTGDVIVIEMNP 293



 Score = 48.2 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/188 (13%), Positives = 69/188 (36%), Gaps = 9/188 (4%)

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTMDSQHLISPPYVIKPLKGGSS 138
            +   +   + D+ R +Q++    +   P+ L   N   +     I  P V++P      
Sbjct: 660 GTSPDSIDAAEDRERFEQMLRELDIRQPPNGLARSNEEALKVAREIDYPVVVRPSYVLGG 719

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKS 197
             + ++  D+ +   +  +        +LI+++++  IE+    + D +       + + 
Sbjct: 720 RAMEIVYSDEDLVRYMTTAVQVEPDHPILIDKFLENAIEVDVDAIADRTGTAVIGGIME- 778

Query: 198 DFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256
             +  +    S +S   LP   +       ++   F   + +   G+   +  +     +
Sbjct: 779 --HIEQAGIHSGDSACTLPTVSLSEAALATIRDWTFKLAKRLNVIGL--MNIQYAIRGEQ 834

Query: 257 VFWLEINV 264
           V+ +E N 
Sbjct: 835 VYIIEANP 842


>gi|24214188|ref|NP_711669.1| putative glycolate oxidase [Leptospira interrogans serovar Lai str.
           56601]
 gi|24195089|gb|AAN48687.1| putative glycolate oxidase [Leptospira interrogans serovar Lai str.
           56601]
          Length = 760

 Score = 74.0 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 39/190 (20%), Positives = 84/190 (44%), Gaps = 14/190 (7%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--FTMDSQHLISPPYV 129
           L+L  I Y  +       + +K++ ++ +   G+P+     V     T D+   ++ P V
Sbjct: 98  LDLPGIRYVDAEA-----ASNKVKMRERLKKAGIPLPGFAPVWSLSDTRDALEFLNFPLV 152

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG-DASLD 188
           +KP     + G+I ++  + +      +  ++   ++++E+Y+ G E++   +  + +  
Sbjct: 153 MKPADNMGARGVIKVENREELQAAFKHAKKYSPTGEMILEEYMPGPEVSVDALTWNGNFV 212

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR-GISRSD 247
           +T IA    D       Y      H +P+ +   I KEV+ + F + +A+G   G  + D
Sbjct: 213 ITGIA----DRIIEREPYFIEMG-HNMPSALSPSILKEVEEVMFRSMKALGITLGAGKGD 267

Query: 248 FLFDPLSRKV 257
               P   KV
Sbjct: 268 IKVTPDGVKV 277


>gi|297688050|ref|XP_002821501.1| PREDICTED: LOW QUALITY PROTEIN: pyruvate carboxylase,
           mitochondrial-like [Pongo abelii]
          Length = 1182

 Score = 74.0 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 31/233 (13%), Positives = 75/233 (32%), Gaps = 17/233 (7%)

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
            +  V      D      +G   E        +   + +            DK+ ++ + 
Sbjct: 101 DIIKVAKENNVDAVHPG-YGFLSERADFAQACQDAGVRFIGPSPEVVRKMGDKVEARAIA 159

Query: 101 SSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL---- 152
            + GVPV P     I       +  +    P + K   GG   G+ V+   + +      
Sbjct: 160 IAAGVPVVPGTDAPITSLHEAHEFSNTYGFPIIFKAAYGGGGRGMRVVHSYEELEENYTR 219

Query: 153 DLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
              ++ +      L +E++++    +   ++GD   ++  +            K      
Sbjct: 220 AYSEALAAFGNGALFVEKFIEKPRHIEVQILGDQYGNILHLYERDCSIQRRHQK-----V 274

Query: 212 THVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
             + P A +   +   +   +    + +G       +FL D   +  +++E+N
Sbjct: 275 VEIAPAAHLDPQLRTRLTGDSVKLAKQVGYENAGTVEFLVDRHGKH-YFIEVN 326


>gi|194387396|dbj|BAG60062.1| unnamed protein product [Homo sapiens]
          Length = 529

 Score = 74.0 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 31/233 (13%), Positives = 75/233 (32%), Gaps = 17/233 (7%)

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
            +  V      D      +G   E        +   + +            DK+ ++ + 
Sbjct: 101 DIIKVAKENNVDAVHPG-YGFLSERADFAQACQDAGVRFIGPSPEVVRKMGDKVEARAIA 159

Query: 101 SSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL---- 152
            + GVPV P     I       +  +    P + K   GG   G+ V+   + +      
Sbjct: 160 IAAGVPVVPGTDAPITSLHEAHEFSNTYGFPIIFKAAYGGGGRGMRVVHSYEELEENYTR 219

Query: 153 DLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
              ++ +      L +E++++    +   ++GD   ++  +            K      
Sbjct: 220 AYSEALAAFGNGALFVEKFIEKPRHIEVQILGDQYGNILHLYERDCSIQRRHQK-----V 274

Query: 212 THVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
             + P A +   +   +   +    + +G       +FL D   +  +++E+N
Sbjct: 275 VEIAPAAHLDPQLRTRLTSDSVKLAKQVGYENAGTVEFLVDRHGKH-YFIEVN 326


>gi|297180136|gb|ADI16359.1| biotin carboxylase [uncultured bacterium HF130_01F24]
          Length = 446

 Score = 74.0 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 79/222 (35%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+      +E     +         L  DK+ + +++   GVP  P    
Sbjct: 77  AVHPGYGFLSENADFAEQVERSGFSFIGPSAETIRLMGDKVSAIKLMREAGVPTVPGSDG 136

Query: 111 --ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGD 164
                   +M     I  P +IK   GG   G+ V+  +  +     L   +++++    
Sbjct: 137 PVSDHPEHSMKLAQEIGYPVIIKATAGGGGRGMRVVHNESELISTIQLTQTEATNFFGSG 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E++++    +   V+GD   +               L+          PA  I   
Sbjct: 197 VVYLEKFLETPRHVEIQVIGDGLGNAI-----NLGDRDCSLQRRHQKVLEEAPAPGISSK 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             + +      A ++I  RG    +FL+     + +++E+N 
Sbjct: 252 SREMIAETCIRACKSIKYRGAGTLEFLY--QDERFYFIEMNT 291


>gi|206890668|ref|YP_002249529.1| acetyl-CoA carboxylase, biotin carboxylase [Thermodesulfovibrio
           yellowstonii DSM 11347]
 gi|206742606|gb|ACI21663.1| acetyl-CoA carboxylase, biotin carboxylase [Thermodesulfovibrio
           yellowstonii DSM 11347]
          Length = 471

 Score = 74.0 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 81/220 (36%), Gaps = 18/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+           I +      A      K  ++++    G+P+ P    
Sbjct: 76  AIHPGYGFLAENPQFAEACAQAGITFIGPNSKAIRKMGLKDEARKIAQELGIPLLPGTPP 135

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGDQL 166
           +      + S   I  P +IK   GG   G+ +   ++S+    P+ + ++      +++
Sbjct: 136 LNSLDEAVKSADEIGYPVMIKATAGGGGRGLRICYDEESLRRQIPIAMSEAKKAFGDERV 195

Query: 167 LIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIY 224
            IE+Y++    +   +M D   ++  +            K        + P+  +P  I 
Sbjct: 196 FIEKYLERPHHIEIQIMADKYGNMVHLGERDCSIQRRHQKL-----IEIAPSLLLPERIR 250

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            E+   A     A+G   +   +FL D      ++LE+N 
Sbjct: 251 CEMGEAAKKLAYAVGYDNVGTVEFLVDESLN-YYFLEMNT 289


>gi|119896979|ref|YP_932192.1| propionyl-CoA carboxylase subunit alpha [Azoarcus sp. BH72]
 gi|119669392|emb|CAL93305.1| probable propionyl-CoA carboxylase alpha chain [Azoarcus sp. BH72]
          Length = 668

 Score = 74.0 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 79/220 (35%), Gaps = 16/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+      LE   I +      + A   DK+ SK++     V   P    
Sbjct: 77  AVHPGYGFLSENAEFSRRLEEEGIKFIGPKHYSVAKMGDKIESKKLAIEAKVNTIPGYND 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD----LLQSSSWNHGDQ 165
            I      ++    I  P +IK   GG   G+ V   D+         + ++ +    D+
Sbjct: 137 AIAGPAEAVEIAKKIGYPVMIKASAGGGGKGLRVAYNDEQAFEGFSSCVNEARNSFGDDR 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+YV +   +   V+GD+  +   +            K             +  ++ 
Sbjct: 197 VFIEKYVLEPRHIEIQVLGDSHGNYVYLNERDCSIQRRHQK----VIEEAPSPFVDAEMR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K +   A    +A+        +F+    +++ ++LE+N 
Sbjct: 253 KAMGEQAVALARAVNYESAGTVEFVVSGATKEFYFLEMNT 292


>gi|113869126|ref|YP_727615.1| acetyl-CoA carboxylase biotin carboxylase subunit [Ralstonia
           eutropha H16]
 gi|113527902|emb|CAJ94247.1| biotin carboxylase [Ralstonia eutropha H16]
          Length = 450

 Score = 74.0 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 35/222 (15%), Positives = 81/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +      +  L  DK+ +KQ +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAERVEKSGFVFIGPTADSIRLMGDKVSAKQAMIKAGVPCVPGSDG 136

Query: 112 ---LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
                 +  + +   +  P +IK   GG   G+ V+  + ++   +     ++       
Sbjct: 137 ALPDDPKEILATARRVGYPVIIKAAGGGGGRGMRVVHTEAALINAVNMTREEAGRAFGNP 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
           ++ +E++++    +   ++ D       +            K          PA  IP  
Sbjct: 197 EVYMEKFLENPRHVEIQILADQHRQAIWLGERDCSMQRRHQK-----VIEEAPAPHIPRR 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + + +      A + +G RG    +FL+   + + +++E+N 
Sbjct: 252 LIERIGDRCAEACKKMGYRGAGTFEFLY--ENNEFYFIEMNT 291


>gi|332716656|ref|YP_004444122.1| acetyl-CoA carboxylase, biotin carboxylase [Agrobacterium sp.
           H13-3]
 gi|325063341|gb|ADY67031.1| acetyl-CoA carboxylase, biotin carboxylase [Agrobacterium sp.
           H13-3]
          Length = 462

 Score = 74.0 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 86/222 (38%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--I 111
            +H  +G   E+      +E   + +      + +   DK+ +K+ + + GVP  P    
Sbjct: 89  AIHPGYGFLSENAAFSQAVEDAGLVFIGPDARSISTMGDKIAAKRAMIAAGVPCVPGPDT 148

Query: 112 LVNRFTMDSQHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL---LQSSSWNHGDQ 165
            +       + +   I  P +IK   GG   G+ V+++   +   +    + +    G  
Sbjct: 149 ALPEDAATVERIANEIGYPIIIKAAGGGGGRGMRVVQESALLHEAITLTREEARQAFGSA 208

Query: 166 LL-IEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
           +L +E+++     +   V+ D   +   +           ++          PA  I +D
Sbjct: 209 VLYMEKFLQHPRHIEIQVLCDTHGNAVWL-----GHRDCSMQRRHQKVVEEAPAPGISVD 263

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + + V      A + IG RG+   +FLF     K +++E+N 
Sbjct: 264 VIQPVGMACVEACRQIGYRGVGTFEFLF--EDGKFYFIEMNT 303


>gi|194290732|ref|YP_002006639.1| acetyl-CoA carboxylase biotin carboxylase subunit [Cupriavidus
           taiwanensis LMG 19424]
 gi|193224567|emb|CAQ70578.1| Biotin carboxylase (Acetyl-CoA carboxylase subunit A) [Cupriavidus
           taiwanensis LMG 19424]
          Length = 450

 Score = 74.0 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 35/222 (15%), Positives = 81/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +      +  L  DK+ +KQ +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAERVEKSGFVFIGPTADSIRLMGDKVSAKQAMIKAGVPCVPGSDG 136

Query: 112 ---LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
                 +  + +   +  P +IK   GG   G+ V+  + ++   +     ++       
Sbjct: 137 ALPDDPKEILATARRVGYPVIIKAAGGGGGRGMRVVHTEAALINAVNMTREEAGRAFGNP 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
           ++ +E++++    +   ++ D       +            K          PA  IP  
Sbjct: 197 EVYMEKFLENPRHVEIQILADQHKQAIWLGERDCSMQRRHQK-----VIEEAPAPHIPRR 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + + +      A + +G RG    +FL+   + + +++E+N 
Sbjct: 252 LIERIGDRCAEACKKMGYRGAGTFEFLY--ENNEFYFIEMNT 291


>gi|169343276|ref|ZP_02864287.1| carbamoyl-phosphate synthase, large subunit [Clostridium
           perfringens C str. JGS1495]
 gi|169298574|gb|EDS80655.1| carbamoyl-phosphate synthase, large subunit [Clostridium
           perfringens C str. JGS1495]
          Length = 1067

 Score = 74.0 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/232 (14%), Positives = 87/232 (37%), Gaps = 19/232 (8%)

Query: 67  LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV--PVCPSILVNRFTMDSQHLI 124
            +   L+   IP   +      L+ D+ +   ++    +  P    +      ++    +
Sbjct: 644 KLAKFLKEKNIPTLGTTSDQIDLAEDREQFDDLLERLNIARPKGKGVWSLEEGLEEARRL 703

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
             P +++P       G+ +   ++ +   L  +   +  + +LI++Y+ G E+    + D
Sbjct: 704 GFPILVRPSFVLGGQGMEITHDEEELTYYLTNAFEKDSKNPILIDKYLMGREIEVDAISD 763

Query: 185 AS---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGC 240
                +      + ++  +S        +S  + PA  I   I ++V         +IG 
Sbjct: 764 GEDVLVPGIMEHLERAGVHS-------GDSITMYPAQNISGKIKEDVLDYTKKLALSIGI 816

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +G+    F+      K++ +E+N +   T     P ++  +G    ++   +
Sbjct: 817 KGMINIQFI--EFEGKLYVIEVNPRASRT----VPYISKVSGVPIVDIATRI 862



 Score = 62.1 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 51/290 (17%), Positives = 106/290 (36%), Gaps = 41/290 (14%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQID-------VDRSVGL--------------V 45
           G ++E + S   G     AL++ G +V  ++        D+ +                V
Sbjct: 21  GQAAEFDYS---GTQACQALKEEGIEVVLVNSNPATIMTDKEIADKVYLEPLTVEFVEKV 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGL-------VQAILELLEIPYTHSGILASALSMDKMRSKQ 98
           +   +PD   ++L G  G+ GL        + IL+   +    + I +     D+   + 
Sbjct: 78  IEKERPD---SLLAGMGGQTGLNLAVELYEKGILDKYNVKVIGTSIESIKEGEDRELFRD 134

Query: 99  VVSSCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
           +++    PV  S ++      +     I  P +++P       G  +   ++ +   L  
Sbjct: 135 MMNRINQPVIQSEIITDLDAGIAFARKIGYPVIVRPAYTLGGTGGGIANNEEELIETLTS 194

Query: 157 SSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215
               +   Q+L+E+ V G  E+   VM D            +      +   + +S  V 
Sbjct: 195 GLQLSTIGQVLLEKSVKGWKEIEYEVMRD---SFGNCITVCNMENIDPVGIHTGDSIVVA 251

Query: 216 PAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           P++ +    Y+ ++  +     A+G  G     F  +P S +   +EIN 
Sbjct: 252 PSQTLSDKEYQMLRSASIDIINAVGIEGGCNVQFALNPHSFEYAVIEINP 301


>gi|158426217|ref|YP_001527509.1| putative acyl-CoA carboxylase alpha chain protein [Azorhizobium
           caulinodans ORS 571]
 gi|158333106|dbj|BAF90591.1| putative acyl-CoA carboxylase alpha chain protein [Azorhizobium
           caulinodans ORS 571]
          Length = 665

 Score = 74.0 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 41/226 (18%), Positives = 71/226 (31%), Gaps = 23/226 (10%)

Query: 49  LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
           + P   F   +  FGE            I +      A      K  +K ++   GVP+ 
Sbjct: 79  IHPGYGFLSENAAFGE------ACAEASITFVGPPASAIRAMGSKSAAKALMEKAGVPLV 132

Query: 109 PSILVNRFT----MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH-- 162
           P                  I  P +IK   GG   G+ V+         L  +       
Sbjct: 133 PGYHGEDQDPALLAAEAARIGYPVLIKASAGGGGKGMKVVASAGEFADALASAQREARNA 192

Query: 163 --GDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK- 218
              D++LIE+Y+     +   V  D+  +   +            K          PA  
Sbjct: 193 FGDDRVLIEKYLTRPRHIEVQVFADSHGNAVYLNERDCSIQRRHQK-----VVEEAPAPG 247

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +  +    + + A  A +A+G  G    +F+        F++E+N 
Sbjct: 248 LSPERRAAMGQAAVDAARAVGYVGAGTVEFI--AEGEDFFFMEMNT 291


>gi|126461939|ref|YP_001043053.1| carbamoyl-phosphate synthase L chain, ATP-binding [Rhodobacter
           sphaeroides ATCC 17029]
 gi|126103603|gb|ABN76281.1| 3-methylcrotonoyl-CoA carboxylase, alpha subunit [Rhodobacter
           sphaeroides ATCC 17029]
          Length = 646

 Score = 74.0 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 44/227 (19%), Positives = 86/227 (37%), Gaps = 27/227 (11%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      +E   + +      A      K  +K +++  GVPV P    
Sbjct: 77  AIHPGYGFLSENPEFVEAVEAAGLVFIGPSAAAIRAMGLKDAAKALMAEAGVPVVPGY-- 134

Query: 114 NRFTMDSQHL------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----G 163
           +    + +HL      I  P +IK + GG   G+  +++ +     L  + +        
Sbjct: 135 HGADQEPEHLALMAQDIGYPVLIKAVAGGGGKGMRRVERAEEFAAALASARAEARTAFGN 194

Query: 164 DQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPL 221
           + +LIE+++D    +   V GD +  V              L+          PA  +  
Sbjct: 195 EAVLIEKWIDCPRHIELQVFGDGTDAVHLYE------RDCSLQRRHQKVIEEAPAPGMTP 248

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR----KVFWLEINV 264
            +   +   A  A +AIG RG    +F+ D  +     + +++E+N 
Sbjct: 249 GMRAAMGEAAVRAARAIGYRGAGTVEFIVDGSAGLSPDRFWFMEMNT 295


>gi|320333552|ref|YP_004170263.1| carbamoyl-phosphate synthase large subunit [Deinococcus
           maricopensis DSM 21211]
 gi|319754841|gb|ADV66598.1| carbamoyl-phosphate synthase, large subunit [Deinococcus
           maricopensis DSM 21211]
          Length = 1028

 Score = 74.0 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 57/289 (19%), Positives = 102/289 (35%), Gaps = 38/289 (13%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI---------DVD------------RSVGLV 45
           G ++E + S   G     AL   G++V  +         D D              V  V
Sbjct: 21  GQAAEFDYS---GTQALKALRREGYRVVLVNSNPATIMTDPDLADATYLEPLTPEFVERV 77

Query: 46  LAHLKPDLAFNVLHG----NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +A  KPD     L G    N   D   +  LE   +    +G+ A     D+   +  + 
Sbjct: 78  IALEKPDALLPTLGGQTALNLAMDLHERGTLEQYNVELIGAGVEAIKKGEDRELFQAAMK 137

Query: 102 SCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             GV      +V+     ++ Q  +  P VI+P       G  +    +           
Sbjct: 138 KIGVETARGKMVHSMDEAIEYQKELGLPVVIRPSFTLGGTGGGIAHTYEDFLRITEGGLR 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPA 217
            +    +L+E+ + G  E    VM D +  V  I   ++    ++       +S  V PA
Sbjct: 198 DSPVTSVLLEESILGWKEYELEVMRDTADTVIIITSIEN----FDPMGVHTGDSITVAPA 253

Query: 218 K-IPLDIYKEVQRLAFLAHQAIG-CRGISRSDFLFDPLSRKVFWLEINV 264
           + +    Y+ ++  +    + IG   G S   F  +P + +V  +E+N 
Sbjct: 254 QTLSDVEYQRLRDQSLAIIREIGVATGGSNIQFAVNPQNGRVIVIEMNP 302



 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 38/265 (14%), Positives = 88/265 (33%), Gaps = 32/265 (12%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVL-HGNFGEDGLVQAI--- 71
           AL+ AG++   +         D D +  L    L  +   N++ H      G++  +   
Sbjct: 580 ALQQAGYETIMVNSNPETVSTDYDTADRLYFEPLTFEDVMNIVDHERP--VGVIVQLGGQ 637

Query: 72  --------LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ-- 121
                   LE    P   +       + D+     +    G+P     +        Q  
Sbjct: 638 TPLKLARRLEDAGAPIIGTSPTTIHTAEDRASFNALCERLGIPQPKGKVAENAEQALQLA 697

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS-SSWNHGDQLLIEQYVDGI-ELTC 179
             +  P + +P        +  ++    +   L +  ++      +L++Q+++G  EL  
Sbjct: 698 EALGFPLMARPSYVLGGRAMRTVRSMDELRTYLTEVYAAVEGQPSILLDQFLEGALELDV 757

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
             + D    V    +   +       +S  ++  + P  +  ++  EV+       + +G
Sbjct: 758 DTLCDGEHAVVAGVMEHIEAAGV---HSGDSACILPPVHLSPELLAEVKATTERLARELG 814

Query: 240 CRGISRSDFLFDPLSRKVFWLEINV 264
            RG+   +  +       + LE N 
Sbjct: 815 VRGL--MNVQWAVKDGVPYILEANP 837


>gi|302411844|ref|XP_003003755.1| conserved hypothetical protein [Verticillium albo-atrum VaMs.102]
 gi|261357660|gb|EEY20088.1| conserved hypothetical protein [Verticillium albo-atrum VaMs.102]
          Length = 365

 Score = 74.0 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 46/253 (18%), Positives = 89/253 (35%), Gaps = 31/253 (12%)

Query: 66  GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCG---VPVCPSILVNRFTMDSQH 122
           G  Q  L +        G L      +K     ++   G   +P   S+     T+    
Sbjct: 110 GKHQNYLRV-----VGQGPLLVEKYDNKDYVNDLLRRLGGFTMPRAWSLPSGPITLSDID 164

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV- 181
               P V+KP +G  S G+ V K    +     +S      + +++E+Y+ G E T  V 
Sbjct: 165 DCIYPLVVKPARGRGSYGVKVCKDASELISH-AESLRSEGLNLVMVEEYLAGEEATVTVM 223

Query: 182 ------MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
                 +G  +L V      +     Y     ++++            Y+ + R      
Sbjct: 224 PPSLDRLGYLALPVVTRFNHQDGIAPY-NGTVAVSTNSRAVVGSDDPAYEVISRECENVA 282

Query: 236 QAIGCRGISRSDF-LFDPLSRKVFWLEINVQPGMTP-----------VSIFPEMAAYAGY 283
           + +G  G  R D   + P   +    ++N++P +T            +S+    A   G+
Sbjct: 283 RVLGVTGAIRIDVRRYGPSDPRFVIFDVNMKPNITGPGRPGREDQACLSLL--AAGGLGW 340

Query: 284 SFRELLLWMVEDA 296
            ++ LL  ++  A
Sbjct: 341 DYQRLLKEILGTA 353


>gi|332296906|ref|YP_004438828.1| Diaminopimelate epimerase [Treponema brennaborense DSM 12168]
 gi|332180009|gb|AEE15697.1| Diaminopimelate epimerase [Treponema brennaborense DSM 12168]
          Length = 1430

 Score = 74.0 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 46/289 (15%), Positives = 109/289 (37%), Gaps = 38/289 (13%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH---------GNFGEDG 66
           AL+  G++V+ +         D D +  L    L P+   N++             G+  
Sbjct: 613 ALKRLGYEVAIVNNNPETVSTDFDTADRLYFEPLTPEDVMNIIRTERPLGVVVAFGGQTA 672

Query: 67  -LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--SILVNRFTMDSQHL 123
             +   L    I    +   +  ++ D+ R  +++    +      S+L     + +   
Sbjct: 673 IKLTKFLHDQGITILGTSADSIDMAEDRERFDELLERLNIKRPKGFSVLTTEEAVSAAEK 732

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           ++ P +++P        +I+   +  I   +    + N  + +LI++Y+ GIEL    + 
Sbjct: 733 LTYPVLLRPSYVLGGQNMIIAFTEADIREYMAIILAQNIENPVLIDKYLMGIELEVDAIC 792

Query: 184 DAS---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIG 239
           D     +      + ++  +S        +S  V PA  +   + +++   +     A+G
Sbjct: 793 DGEDILIPGIMEHIERTGIHS-------GDSIAVYPAWNLNDILTEKIINQSRELALALG 845

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
            +G+    +L      +++ +E+N +   T     P ++   G    EL
Sbjct: 846 TKGLVNIQYLI--YDNELYIIEVNPRSSRT----IPYISKVTGVPMVEL 888



 Score = 70.2 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 48/286 (16%), Positives = 99/286 (34%), Gaps = 33/286 (11%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQID---------------------VDRSVGLV 45
           G ++E + +   G     AL++ G KV  ++                     +  ++  +
Sbjct: 21  GQAAEFDYA---GTQACKALKEQGLKVVLVNSNPATLMTDHTMADAIYIEPLIPETIKRI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   KPD   + L G  G    +Q      L    +    +       + D+   K  + 
Sbjct: 78  IEKEKPDSLLSTLGGQTGLTLSMQLAKEGFLAEHGVQLLGARPDTIDKAEDRQLFKDTMQ 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G P  PS +V   +  +D    I  P +++P       G  +   ++ +         
Sbjct: 138 EIGEPCIPSKVVTDLQSALDFTDEIGYPVIVRPAFTLGGTGGGIAYSEEELREIAQNGLH 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   Q+L+E+ + G  E+   V+ D S +V  I V   + +     ++  +        
Sbjct: 198 RSPIHQILVEKCISGWKEIEFEVIRDGSGNV--ITVCSMENFDPVGVHTGDSIVIAPTVT 255

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +    Y+ ++  A     A+   G     F   P S +   +E+N 
Sbjct: 256 LADKEYQMLRSAALNIISALKIEGGCNCQFALKPDSFEYAVIEVNP 301


>gi|239933190|ref|ZP_04690143.1| pyruvate carboxylase [Streptomyces ghanaensis ATCC 14672]
 gi|291441539|ref|ZP_06580929.1| pyruvate carboxylase [Streptomyces ghanaensis ATCC 14672]
 gi|291344434|gb|EFE71390.1| pyruvate carboxylase [Streptomyces ghanaensis ATCC 14672]
          Length = 1124

 Score = 74.0 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 41/216 (18%), Positives = 76/216 (35%), Gaps = 17/216 (7%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC----PSILVN 114
           +G   E+  +    E   I +   G     L+ +K R+       GVPV     PS  V+
Sbjct: 83  YGFLSENPELARACEEAGITFVGPGADILELTGNKARAVAAAREAGVPVLASSEPSTDVD 142

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGDQLLIE 169
              + +   I  P  +K + GG   G+  ++    +   +       +S++      L +
Sbjct: 143 EL-LRAADGIGFPVFVKAVAGGGGRGMRRVEDPAQLREAVEAASREAASAFGDATVFLEK 201

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQ 228
             V+   +   ++ D   DV              ++        + PA  +  D+ + + 
Sbjct: 202 AVVEPRHIEVQILADGHGDVI-----HLFERDCSVQRRHQKVIELAPAPNLDPDLRERIC 256

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             A    + IG R     +FL D     VF  E+N 
Sbjct: 257 TDAVNFARRIGYRNAGTVEFLLDRDGNHVFI-EMNP 291


>gi|197106486|ref|YP_002131863.1| acetyl/propionyl-CoA carboxylase, alpha subunit [Phenylobacterium
           zucineum HLK1]
 gi|196479906|gb|ACG79434.1| acetyl/propionyl-CoA carboxylase, alpha subunit [Phenylobacterium
           zucineum HLK1]
          Length = 629

 Score = 74.0 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 79/224 (35%), Gaps = 22/224 (9%)

Query: 58  LHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
           +H  +G   E+      +    + +      A      K  +K ++   GVPV P  L  
Sbjct: 81  IHPGYGFLSENAEFAEAVAKAGLTWIGPPPAAIRAMGLKDAAKDLMQKAGVPVTPGYLGE 140

Query: 115 RFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQL 166
             +          I  P +IK + GG   G+  ++K +     L  +          D++
Sbjct: 141 DQSEAVLQREADRIGYPVLIKAVAGGGGKGMRKVEKPEDFLAALGAAKREAAAAFGDDRV 200

Query: 167 LIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIY 224
           L+E YV     +   V GD   +V  +           L+          PA  +  +  
Sbjct: 201 LLETYVTRPRHIEVQVFGDTKGNVVHLYE-----RDCSLQRRHQKVIEEAPAPGMSDEAR 255

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSR----KVFWLEINV 264
             V   A  A QA+G  G    +F+ D        +++++E+N 
Sbjct: 256 AAVTSAAVRAAQAVGYVGAGTVEFIADASEGLKPDRIWFMEMNT 299


>gi|187779560|ref|ZP_02996033.1| hypothetical protein CLOSPO_03156 [Clostridium sporogenes ATCC
           15579]
 gi|187773185|gb|EDU36987.1| hypothetical protein CLOSPO_03156 [Clostridium sporogenes ATCC
           15579]
          Length = 1068

 Score = 74.0 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/216 (13%), Positives = 79/216 (36%), Gaps = 12/216 (5%)

Query: 67  LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV--PVCPSILVNRFTMDSQHLI 124
            +   L+   IP   +      ++ D+ +  +++    +  P    I      ++    +
Sbjct: 644 KLANFLKEKNIPTLGTTADQIDMAEDREKFDELLEKLQISRPKGKGIWSVEDGLEEAKKL 703

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
             P +++P       G+ +   ++ +   L  +   +  + +LI++Y+ G E+    + D
Sbjct: 704 GFPVLVRPSYVLGGQGMKITHDEKELVYYLSNAFQKDKKNPILIDKYLMGREIEVDAISD 763

Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244
               +    +   +       +S  + T      +  DI +++          IG +G+ 
Sbjct: 764 GEDVLIPGIMEHLER---AEVHSGDSITMYPTQNVSKDIKEKILEYTKRLALGIGIKGMI 820

Query: 245 RSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFP 275
              F+       ++ +E+N       P ++ VS  P
Sbjct: 821 NIQFI--EFQGNLYVIEVNPRASRTVPYISKVSKVP 854



 Score = 57.8 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 56/290 (19%), Positives = 108/290 (37%), Gaps = 41/290 (14%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQID---------------------VDRSVGLV 45
           G ++E + S   G      L++ G +V  I+                         V  V
Sbjct: 21  GQAAEFDYS---GTQACEGLKEEGVEVVLINSNPATIMTDKEVADKVYLEPLTAEFVEKV 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLV-------QAILELLEIPYTHSGILASALSMDKMRSKQ 98
           +A  +PD   ++L G  G+ GL        + IL+   +    + I +     D+   + 
Sbjct: 78  IAKERPD---SLLAGMGGQTGLNLAVELYDKGILKKYGVNVIGTSIESIKEGEDRELFRN 134

Query: 99  VVSSCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
           V+S    PV  S +V          + I  P +++P       G  + + ++ +   L  
Sbjct: 135 VMSRINEPVIQSEIVTDMENGKAFANKIGYPVIVRPAYTLGGTGGGIAESEEELDEILTL 194

Query: 157 SSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215
               +   Q+L+E+ V G  E+   VM D   +   I V   +     +   + +S  V 
Sbjct: 195 GLQLSSIGQVLLEKSVKGWKEIEYEVMRDNRGN--CITVCNMENID-PVGIHTGDSIVVA 251

Query: 216 PAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           P++ +    Y+ ++  +     ++G  G     F  +P S +   +EIN 
Sbjct: 252 PSQTLSDKEYQMLRSASINIINSVGIEGGCNVQFALNPNSFEYAVIEINP 301


>gi|73542551|ref|YP_297071.1| acetyl-CoA carboxylase biotin carboxylase subunit [Ralstonia
           eutropha JMP134]
 gi|72119964|gb|AAZ62227.1| Acetyl-CoA carboxylase, biotin carboxylase [Ralstonia eutropha
           JMP134]
          Length = 450

 Score = 74.0 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 35/222 (15%), Positives = 81/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +      +  L  DK+ +KQ +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAERVEKSGFVFIGPTAESIRLMGDKVSAKQAMIKAGVPCVPGSEG 136

Query: 112 LVNRFTMD---SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
            +     +   +   +  P +IK   GG   G+ V+  + ++   +     ++       
Sbjct: 137 ALPDDPAEIVAAARRVGYPVIIKAAGGGGGRGMRVVHTEAALVNAVNMTREEAGRAFGNP 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
           ++ +E++++    +   ++ D       +            K          PA  IP  
Sbjct: 197 EVYMEKFLENPRHVEIQILADQHKQAIWLGERDCSMQRRHQK-----VIEEAPAPHIPRR 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + + +      A + +G RG    +FL+   + + +++E+N 
Sbjct: 252 LIERIGDRCAEACRKMGYRGAGTFEFLY--ENNEFYFIEMNT 291


>gi|254455284|ref|ZP_05068713.1| acetyl-CoA carboxylase, biotin carboxylase [Candidatus Pelagibacter
           sp. HTCC7211]
 gi|207082286|gb|EDZ59712.1| acetyl-CoA carboxylase, biotin carboxylase [Candidatus Pelagibacter
           sp. HTCC7211]
          Length = 445

 Score = 74.0 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 82/221 (37%), Gaps = 21/221 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---- 109
            +H  +G   E+     ILE  +I +  +      +  DK+++K++    G+PV      
Sbjct: 77  AVHPGYGFLSENSNFAKILEDNKIGFIGASSKHIEMMGDKIQAKRIAKENGLPVIEGSEG 136

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSWNHGDQ 165
            +       +    I  P +IK   GG   G+ ++ +++           ++  +   D+
Sbjct: 137 GVTDIAQAKELCKKIGFPVLIKASGGGGGKGMKIVHREEEFENLFSTAKSEAQKYFGNDE 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           + IE++  +   +   ++   +       V         ++          P+  +  +I
Sbjct: 197 VYIEKFFQNPRHIEVQILAGKN------NVVHLHERDCSVQRRHQKLIEETPSPVLNDEI 250

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            K++          IG  G    +F++     K ++LE+N 
Sbjct: 251 RKDLFDRTVQMVSKIGYMGAGTVEFIY--EDGKFYFLEMNT 289


>gi|51893320|ref|YP_076011.1| pyruvate carboxylase [Symbiobacterium thermophilum IAM 14863]
 gi|51857009|dbj|BAD41167.1| pyruvate carboxylase [Symbiobacterium thermophilum IAM 14863]
          Length = 1148

 Score = 74.0 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 34/221 (15%), Positives = 78/221 (35%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+           I +         +  DK+ ++++    G+P+      
Sbjct: 83  AIHPGYGFLAENAAFARRCREEGIAFIGPDPEHLEMFGDKVAARRIAREAGLPLPRGTEA 142

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS-----SSWNHGD 164
            +   +  +     +  P ++K + GG   G+ V++ D  +   L ++     +++  G+
Sbjct: 143 PVASVKEALAFAREVGYPIIVKAVLGGGGRGMRVVRSDAELKDALERARSEAQAAFGSGE 202

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDI 223
             L E       +   VM D   +V  +            K        + P+  +    
Sbjct: 203 VYLEEYVERPRHIEVQVMADRYGNVVHLYERDCSIQRRHQK-----VVEIAPSLALTEPQ 257

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +E+   A      +G  G    +FL  P   + +++E+N 
Sbjct: 258 RQEICGAAVRLMARVGYVGAGTVEFLVAP-DGRYYFMEVNP 297


>gi|323489517|ref|ZP_08094744.1| carbamoyl-phosphate synthase pyrimidine-specific large chain
           [Planococcus donghaensis MPA1U2]
 gi|323396648|gb|EGA89467.1| carbamoyl-phosphate synthase pyrimidine-specific large chain
           [Planococcus donghaensis MPA1U2]
          Length = 1062

 Score = 74.0 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 54/297 (18%), Positives = 113/297 (38%), Gaps = 36/297 (12%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL++ G++V  I         D +              V  +L   +PD     L G  G
Sbjct: 36  ALKEEGYRVILINSNPATIMTDTEVADKVYIEPITLEFVSRILRKERPDALLPTLGGQTG 95

Query: 64  EDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
            +  ++     IL+ L I    + + A   + D+   + +++  G PV  S +++  T  
Sbjct: 96  LNMAIELDESGILDELNIEILGTKLEAIHKAEDRDLFRTLMNELGEPVPDSDIIHNMTEA 155

Query: 120 SQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IE 176
                 +  P +++P       G  +    + +   +     ++   Q L+E+ + G  E
Sbjct: 156 ENFVDRVGYPVIVRPAFTLGGTGGGICHDYEQLKEIVASGLKYSPVTQCLLEKSIAGFKE 215

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAH 235
           +   VM D +   T I V   +     +   + +S  V P++ +    Y+ ++ ++    
Sbjct: 216 VEYEVMRDKND--TAIVVCNMENID-PVGIHTGDSIVVAPSQTLSDREYQMLRNVSLKII 272

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +A+   G        DP S   + +E+N  P ++  S     +   GY   +L   +
Sbjct: 273 RALKIEGGCNVQLALDPFSFNYYIIEVN--PRVSRSS--ALASKATGYPIAKLAAKI 325



 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 26/217 (11%), Positives = 80/217 (36%), Gaps = 20/217 (9%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC--PSILVNRFTMDSQHLISPPYV 129
           LE   +    + +  +  + ++ + +  +   G+P     + +     +     I  P +
Sbjct: 646 LEQNGVKILGTSLEDTDRAENRNKFEAALHEIGIPQPLGKTAVNTEEAIIIAGDIGYPVL 705

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS--- 186
           ++P        + ++  ++ +   +  +   +    +L+++Y+ GIE+    + D     
Sbjct: 706 VRPSYVLGGRAMEIVYNEEDLKHYMEHAVEASPEHPVLVDRYLTGIEIEVDAISDGENVL 765

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISR 245
           +      + ++  +S        +S  V P   I  ++ + +        + +   G+  
Sbjct: 766 IPGIMEHIERAGVHS-------GDSIAVYPTQNISNELLETLVDYTTRLAKGLNIVGLLN 818

Query: 246 SDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277
             ++      +VF +E+N       P M+ ++  P  
Sbjct: 819 IQYVISK--GEVFVIEVNPRSSRTVPFMSKITSIPMA 853


>gi|303230220|ref|ZP_07316988.1| carbamoyl-phosphate synthase, large subunit [Veillonella atypica
           ACS-134-V-Col7a]
 gi|302515146|gb|EFL57120.1| carbamoyl-phosphate synthase, large subunit [Veillonella atypica
           ACS-134-V-Col7a]
          Length = 1066

 Score = 74.0 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 40/262 (15%), Positives = 99/262 (37%), Gaps = 28/262 (10%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH--------GNFGEDGL 67
           AL  AG++   I         D D S  L    L  D    +++          FG    
Sbjct: 578 ALRKAGYQSIMINNNPETVSTDFDISDSLYFEPLTVDDVMEIIYKEKPAGVIAQFGGQTA 637

Query: 68  V--QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTMDSQHL 123
           +     L    +    + + +  ++ D+ R  ++++  G+P     LV  +     +   
Sbjct: 638 INLAGPLAKRGVKILGTSVDSIDMAEDRERFDELLAKLGIPRPVGALVTSDEEAQAAAKN 697

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           +  P +++P        + ++  D+ + + + ++   +    +LI++Y+ G+E+    + 
Sbjct: 698 LKYPLIVRPSYVLGGRAMEIVYNDKELDVYMKEAVVASKEHPVLIDRYMVGMEVEVDAIS 757

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRG 242
           D     T++ +P            S +S  V PA+ +  +I  ++          +  +G
Sbjct: 758 DG----TDVCIPGIMEQIERAGVHSGDSMAVYPAQHLSQEIIDQIVDYTRRIAIGLNVKG 813

Query: 243 ISRSDFLFDPLSRKVFWLEINV 264
           +    ++      ++  +E+N 
Sbjct: 814 VLNIQYIV--ADGELNVIEVNP 833



 Score = 62.1 bits (150), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 48/286 (16%), Positives = 100/286 (34%), Gaps = 33/286 (11%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI---------DVD------------RSVGLV 45
           G ++E + +   G     +L + G+KV  +         D D              V  V
Sbjct: 19  GQAAEFDYA---GTQACRSLREEGYKVVLVNSNPATIMTDTDIADRVYVEPISLEFVTEV 75

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   +P      L G  G +  VQ     +LE   +    + + A   + D+   K+ + 
Sbjct: 76  IKKERPWGLLATLGGQVGLNMAVQLSEAGVLEEYGVKLLGTTLEAIKHAEDRELFKEAMK 135

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
               PV  S + N     +   + I  P +I+P       G  +   +  +     +   
Sbjct: 136 EINQPVPESDIFNDLEEAVAFANRIGYPIIIRPAYTLGGTGGGIAHNEDEMYEITRRGLK 195

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   Q+L+E+ V G  E+   VM D++ +   I V   +       ++  +        
Sbjct: 196 LSPIHQILVERSVAGWKEIEYEVMRDSADN--CIIVCNMENIDPVGVHTGDSIVVAPSQT 253

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +    Y+ ++  +    + +   G     +  +P S +   +E+N 
Sbjct: 254 LNDIQYQMLRTASVDIIRYLKIEGGCNVQYALNPDSNEYIVIEVNP 299


>gi|289168074|ref|YP_003446343.1| carbamoyl-phosphate synthase, large subunit [Streptococcus mitis
           B6]
 gi|288907641|emb|CBJ22478.1| carbamoyl-phosphate synthase, large subunit [Streptococcus mitis
           B6]
          Length = 1058

 Score = 74.0 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 26/228 (11%), Positives = 77/228 (33%), Gaps = 19/228 (8%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYV 129
           L    +    + +     + D+   +Q +    +P  P            +   I  P +
Sbjct: 646 LAKAGVTILGTQVADLDRAEDRDLFEQALKDLDIPQPPGQTATNEEEAVLAARKIGFPVL 705

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS--- 186
           ++P        + +++ ++ +   +  +   +    +L++ Y+ G E     + D     
Sbjct: 706 VRPSYVLGGRAMEIVENEEDLRSYMRTAVKASPDHPVLVDSYIVGQECEVDAISDGENVL 765

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISR 245
           +      + ++  +S        +S  V P + +   + + +          + C G+  
Sbjct: 766 IPGIMEHIERAGVHS-------GDSMAVYPPQTLSQMVQETIADYTKRLAIGLNCLGMMN 818

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
             F+      KV+ +E+N +   T     P ++        ++   ++
Sbjct: 819 IQFVI--KDEKVYVIEVNPRASRT----VPFLSKVTNIPMAQVATKLI 860



 Score = 70.2 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 54/302 (17%), Positives = 115/302 (38%), Gaps = 37/302 (12%)

Query: 20  KACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNVL 58
           +AC S L++ G++V  ++        D+ +                +L   +PD     L
Sbjct: 32  QACLS-LKEEGYEVVLVNSNPATIMTDKEIADKVYIEPITLEFVTRILRKERPDALLPTL 90

Query: 59  HGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
            G  G +  ++     IL+ L +    + + A   + D+   KQ++     P+  S +VN
Sbjct: 91  GGQTGLNMAMELSKNGILDELGVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIVN 150

Query: 115 --RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                +     I  P +++P       G  +   ++ +          +   Q LIE+ +
Sbjct: 151 TVEEAVAFAATIGYPVIVRPAFTLGGTGGGMCANEEELREIAENGLKLSPVTQCLIERSI 210

Query: 173 DG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRL 230
            G  E+   VM D++ +   + V   + +   +   + +S    PA+ +     + ++  
Sbjct: 211 AGFKEIEYEVMRDSADNA--LVVCNMENFD-PVGIHTGDSIVFAPAQTMSDYENQMLRDA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    +A+   G        DP S K + +E+N  P ++  S     +   GY   +L  
Sbjct: 268 SLSIIRALKIEGGCNVQLALDPHSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325


>gi|288553213|ref|YP_003425148.1| pyruvate carboxylase [Bacillus pseudofirmus OF4]
 gi|288544373|gb|ADC48256.1| pyruvate carboxylase [Bacillus pseudofirmus OF4]
          Length = 1148

 Score = 74.0 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 26/221 (11%), Positives = 77/221 (34%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+       +   I +    +    +  DK++++       +PV P    
Sbjct: 83  AIHPGYGFLSENIDFATRCKEEGIIFIGPELEHLIMFGDKVQARTQAVKANLPVIPGSDG 142

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGDQ 165
            +L              P++IK   GG   G+ +++    +         ++ S    D+
Sbjct: 143 PVLSLEEVEKFGEEHGYPFIIKASLGGGGRGMRIVRSKSEMKESYERAKSEAKSAFGNDE 202

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDI 223
           + +E++++    +   ++ D       +           ++        + P   + +++
Sbjct: 203 VYVEKFIENPKHIEVQILADKHGSTVHLY-----DRDCSVQRRHQKVVEIAPSVSLDIEL 257

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +   A    + +        +FL    + + +++E+N 
Sbjct: 258 RERICAAAVQLMENVNYLNAGTVEFLVT-DTGEFYFIEVNP 297


>gi|222151022|ref|YP_002560176.1| carbamoyl-phosphate synthase large chain [Macrococcus caseolyticus
           JCSC5402]
 gi|254813600|sp|B9EB69|CARB_MACCJ RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|222120145|dbj|BAH17480.1| carbamoyl-phosphate synthase large chain [Macrococcus caseolyticus
           JCSC5402]
          Length = 1057

 Score = 74.0 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 55/297 (18%), Positives = 116/297 (39%), Gaps = 36/297 (12%)

Query: 25  ALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFNVLHGNFG 63
           AL++ G+KV  ++ + +                     V  ++   +PD     L G  G
Sbjct: 36  ALKEEGYKVILVNSNPATIMTDTEIADKVYIEPLTLDFVSRIIRKEQPDALLPTLGGQTG 95

Query: 64  EDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFT 117
            +  VQ     ILE   +    + + +   + D+   + +++    PV  S +VN  +  
Sbjct: 96  LNMAVQLHEAGILEENNVTLLGTKLSSIEQAEDRDLFRNLMNELNEPVPESDIVNTVQQA 155

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IE 176
           +D    I  P +++P       G  +   ++ +   +     ++   Q LIE+ + G  E
Sbjct: 156 IDFATSIGYPVIVRPAFTMGGTGGGICHDEKELVEIVTNGLKYSPVTQCLIEKSIAGYKE 215

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAH 235
           +   VM D++ +   I V   +     +   + +S  V P++ +    Y  ++ ++    
Sbjct: 216 IEYEVMRDSNDNA--IVVCNMENID-PVGIHTGDSIVVAPSQTLTDKEYHMLRDVSLKII 272

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +A+G  G        DP S   + +E+N  P ++  S     +   GY   +L   +
Sbjct: 273 RALGIEGGCNVQLALDPHSFNYYIIEVN--PRVSRSS--ALASKATGYPIAKLAAKI 325



 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 37/280 (13%), Positives = 94/280 (33%), Gaps = 33/280 (11%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ------ 69
           A+ +AG++   I         D   S  L    L  +   N+++    E  +VQ      
Sbjct: 580 AIREAGYEAIIINNNPETVSTDFSISDKLYFEPLTEEDVMNIINLEQPEGVVVQFGGQTA 639

Query: 70  ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHL 123
                 L    +    + +     + D+   + ++    +P             + +   
Sbjct: 640 INLAEKLTKYGVKVLGTSLENLDRAEDRKEFEALMQRIEIPQPLGKTATSVEEAVANADF 699

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + ++  ++ +   + Q+   +    +LI++Y+ G E+    + 
Sbjct: 700 IGYPVLVRPSYVLGGRAMEIVYNEEELINYMTQAVKASPEHPVLIDRYLTGKEIEVDAIC 759

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRG 242
           D    V    +   +           +S  V P + +       ++         +  +G
Sbjct: 760 DGETVVIPGIMEHIERAGVHS----GDSIAVYPPQTLTEKQIATLEDYTKRLAHGLEIKG 815

Query: 243 ISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277
           +    ++    + +VF LE+N       P ++ ++  P  
Sbjct: 816 LLNIQYVI--SNDEVFVLEVNPRASRTVPFLSKITDVPMA 853


>gi|111022363|ref|YP_705335.1| carboxylase/ CoA carboxylase [Rhodococcus jostii RHA1]
 gi|110821893|gb|ABG97177.1| carboxylase/ CoA carboxylase [Rhodococcus jostii RHA1]
          Length = 1060

 Score = 74.0 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 33/200 (16%), Positives = 70/200 (35%), Gaps = 16/200 (8%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD----SQHLISPPYVIK 131
            + +            DK  ++ + + CGVPV  +        D    +Q L +   ++K
Sbjct: 97  GLTFVGPDAHTLRTLGDKSATRALATGCGVPVLAATAGPTSKTDARQFAQSLPAGAVIVK 156

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG----DQLLIEQYVD-GIELTCGVMGDAS 186
              GG   G+ +++    +   + +  S          + +E Y+     +   V+GD  
Sbjct: 157 ATAGGGGRGMRIVEDLTELDRAIDRCRSEAERSFGLSDVYVEAYLPRARHIEVQVVGDGV 216

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISR 245
                             +        + PA  +P    KE+   A     ++G RG++ 
Sbjct: 217 STPM-----HLFDRDCTAQRRHQKVVEIAPAQNLPDSTRKELHSAALTLASSVGLRGLAT 271

Query: 246 SDFLFDPLS-RKVFWLEINV 264
            +FL +     + +++E N 
Sbjct: 272 FEFLVESDHLDRWYFIEANP 291


>gi|92117712|ref|YP_577441.1| acetyl-CoA carboxylase biotin carboxylase subunit [Nitrobacter
           hamburgensis X14]
 gi|91800606|gb|ABE62981.1| acetyl-CoA carboxylase carboxyltransferase subunit alpha
           [Nitrobacter hamburgensis X14]
          Length = 451

 Score = 74.0 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 76/221 (34%), Gaps = 20/221 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---- 109
            +H  +G   E+     IL    + +         L  DK+ +K+     G+PV P    
Sbjct: 77  AVHPGYGFLSENARFAEILADHGLHFIGPKAEHIRLMGDKIEAKKTAKRLGIPVVPGSDG 136

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
            I  +   M     I  P ++K   GG   G+ + K    + + +     ++ +      
Sbjct: 137 GIGPDHDAMAIAKAIGFPVLVKAAAGGGGRGMKIAKTPDDLMMAISTAGNEARAAFGDAS 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           + +E+Y+     +   V+GD                   L+          P+  +    
Sbjct: 197 VYLEKYLQKPRHIEIQVLGDGRGGAI-----HLGERDCSLQRRHQKVWEEGPSPVLTAAA 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             ++      A + I   G+   +FL+     K +++E+N 
Sbjct: 252 RNKIGETVARAMREIQYLGVGTIEFLY--EDGKFYFIEMNT 290


>gi|45658117|ref|YP_002203.1| putative glycolate oxidase [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|45601359|gb|AAS70840.1| putative glycolate oxidase [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
          Length = 760

 Score = 74.0 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 39/190 (20%), Positives = 84/190 (44%), Gaps = 14/190 (7%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--FTMDSQHLISPPYV 129
           L+L  I Y  +       + +K++ ++ +   G+P+     V     T D+   ++ P V
Sbjct: 98  LDLPGIRYVDAEA-----ASNKVKMRERLKKAGIPLPGFAPVWSLSDTRDALEFLNFPLV 152

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG-DASLD 188
           +KP     + G+I ++  + +      +  ++   ++++E+Y+ G E++   +  + +  
Sbjct: 153 MKPADNMGARGVIKVENREELQAAFKHAKKYSPTGEMILEEYMPGPEVSVDALTWNGNFV 212

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR-GISRSD 247
           +T IA    D       Y      H +P+ +   I KEV+ + F + +A+G   G  + D
Sbjct: 213 ITGIA----DRIIEREPYFIEMG-HNMPSALSPSILKEVEEVMFRSMKALGITLGAGKGD 267

Query: 248 FLFDPLSRKV 257
               P   KV
Sbjct: 268 IKVTPDGVKV 277


>gi|302521668|ref|ZP_07274010.1| acetyl-CoA carboxylase, biotin carboxylase [Streptomyces sp. SPB78]
 gi|302430563|gb|EFL02379.1| acetyl-CoA carboxylase, biotin carboxylase [Streptomyces sp. SPB78]
          Length = 661

 Score = 74.0 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 41/229 (17%), Positives = 80/229 (34%), Gaps = 25/229 (10%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---- 109
            +H  +G   E+           + +      A  L  DK+R+K+ V + GVPV P    
Sbjct: 77  AVHPGYGFLAENAAFARACADAGLVFIGPPADAVDLMGDKIRAKETVKAAGVPVVPGSSG 136

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
           S L +    D+   I  P ++KP  GG   G+ ++ ++  +  ++  +          D 
Sbjct: 137 SGLDDEELADAAREIGMPVLLKPSAGGGGKGMRLVHEEALLAEEIAAARREARSSFGDDT 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           LL+E++V     +   V  D   +V  +   +        K             +     
Sbjct: 197 LLVERWVQRPRHIEIQVFADRHGNVIHLGERECSLQRRHQK----LIEEAPSVLLDEATR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLS---------RKVFWLEINV 264
             +   A  A ++ G  G    +F+                 +++E+N 
Sbjct: 253 TAMGEAAVRAARSCGYEGAGTVEFIVPGPDPDAPAGTAPEAYYFMEMNT 301


>gi|193214424|ref|YP_001995623.1| acetyl-CoA carboxylase, biotin carboxylase [Chloroherpeton
           thalassium ATCC 35110]
 gi|193087901|gb|ACF13176.1| acetyl-CoA carboxylase, biotin carboxylase [Chloroherpeton
           thalassium ATCC 35110]
          Length = 444

 Score = 74.0 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 41/220 (18%), Positives = 76/220 (34%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+     + +   I +            DK+ +K+ +    VPV P    
Sbjct: 77  AIHPGYGFLAENADFAEVCQSSGIKFIGPSAEMIRKMGDKITAKESMKIAQVPVVPGSDG 136

Query: 112 LVNRFTMDS--QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
           LV   +        I  P +IK   GG   G+ ++ K   +    + + S          
Sbjct: 137 LVEDVSEAKRLAAQIGLPVIIKATAGGGGKGMRIVHKMDDLEKAFVTAQSEAEKSFGNSG 196

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE++V+    +   VMGD   +V  +            K             +   + 
Sbjct: 197 VYIEKFVEEPRHVEIQVMGDQYGNVFHLGERDCTVQRRHQK----LIEESPSPVMNEALR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            ++   A  A +AI   G    +FL D      +++E+N 
Sbjct: 253 DKMGDAAVNAAKAIQYEGAGTVEFLVDKYMN-FYFMEMNT 291


>gi|113969040|ref|YP_732833.1| carbamoyl-phosphate synthase L chain, ATP-binding [Shewanella sp.
            MR-4]
 gi|113883724|gb|ABI37776.1| Carbamoyl-phosphate synthase L chain, ATP-binding [Shewanella sp.
            MR-4]
          Length = 1517

 Score = 74.0 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 86/221 (38%), Gaps = 18/221 (8%)

Query: 57   VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
             LH   G   E     A+     + +    + +     +K  + +   S  VPV P    
Sbjct: 1018 ALHPGIGFLSESPQFAALCVNNGVNFVGPSVHSMTTMGNKSNAIKTSQSQNVPVVPGSHG 1077

Query: 111  -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI-----PLDLLQSSSWNHGD 164
             +      ++  + I  P ++K ++GG   GI V+K+ + +           ++++ +GD
Sbjct: 1078 ILTNAEQAVNVANEIGYPVLLKAVQGGGGKGIQVVKRPEDMIGLFQKTSTEAAAAFGNGD 1137

Query: 165  QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
              L E+YV     +   ++ D   +   + +          K    + + +    +P ++
Sbjct: 1138 LYL-EKYVTSLRHIEVQLLRDKFGNAKVLGLRDCSVQRNNQKVVEESGSTM----LPEEL 1192

Query: 224  YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             K+V         A    G    +F+++  + +V+++E+N 
Sbjct: 1193 KKQVLAYTRALGDATDYMGAGTVEFIYNLDANEVYFMEMNT 1233


>gi|313123764|ref|YP_004034023.1| carbamoyl-phosphate synthase large subunit [Lactobacillus
           delbrueckii subsp. bulgaricus ND02]
 gi|312280327|gb|ADQ61046.1| Carbamoyl-phosphate synthase large subunit [Lactobacillus
           delbrueckii subsp. bulgaricus ND02]
          Length = 1066

 Score = 74.0 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 58/315 (18%), Positives = 112/315 (35%), Gaps = 39/315 (12%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI---------DVD------------RSVGLV 45
           G ++E + +   G     AL + G +V  I         D D              V  +
Sbjct: 21  GQAAEFDYA---GTQACRALREEGIEVVLINSNPATIMTDGDMADHVYIEPLTVPVVKQL 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   KPD     + G    +  +    +  LE   +    +      ++ D++  K ++ 
Sbjct: 78  IEKEKPDALLPTMGGQNALNIAMALADEGFLEKHHVKTIGTDTDTIKMAEDRLEFKNLME 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G PV  S++VN     +     I  P V++P       G  +    Q +         
Sbjct: 138 RIGEPVAKSVVVNYVEDAIAFAKEIGYPVVVRPAYTLGGTGGGIAHNKQELHEICSNGLR 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   + LIEQ + G  E+   VM D + +   I V   +       ++  +S  V P++
Sbjct: 198 LSRVTECLIEQSIAGWKEVEYEVMRDGAGN--CITVCNMENMDPVGVHT-GDSIVVAPSQ 254

Query: 219 -IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
            +    Y+ ++  A     A+  +G        +P S +   +E+N  P ++  S     
Sbjct: 255 TLSDKDYQMLRSSALNIITALNIKGGCNVQLALNPDSFEYCVIEVN--PRVSRSS--ALA 310

Query: 278 AAYAGYSFRELLLWM 292
           +   GY   +L   +
Sbjct: 311 SKATGYPIAKLATKI 325



 Score = 69.8 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 32/226 (14%), Positives = 86/226 (38%), Gaps = 13/226 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTMDSQHLISPPYV 129
           L  + +P   +   +   + D+ R  +++  C +       V      + + + +  P +
Sbjct: 647 LMKMGVPILGTSADSVDAAEDRERFDEILEKCQIDRPKGQTVFTAEEALKAANELGYPVL 706

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLL-QSSSWNH-GDQLLIEQYVDGIELTCGVMGDASL 187
           ++P       G+ +   D  +   +   +S +N     +LI++Y+ G E     + D   
Sbjct: 707 VRPSYVLGGAGMEIALNDGDLKRFIDHITSQFNIEDHPILIDKYLAGKECEVDAICDDEG 766

Query: 188 DVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
            +    +   +       +S  + +   P KI  ++ + +   +    +A+  +G+    
Sbjct: 767 ILIPGIMEHVERAGV---HSGDSISIYPPQKISQEMKERIVEYSKRLAKALKVKGLMNIQ 823

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           F+      KV+ +E+N +   T     P ++   G    ++   ++
Sbjct: 824 FIV--YENKVYVIEVNPRSSRT----IPYISKVTGIPLVDMATNVI 863


>gi|302525022|ref|ZP_07277364.1| pyruvate carboxylase [Streptomyces sp. AA4]
 gi|302433917|gb|EFL05733.1| pyruvate carboxylase [Streptomyces sp. AA4]
          Length = 1125

 Score = 74.0 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 37/216 (17%), Positives = 76/216 (35%), Gaps = 17/216 (7%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC----PSILVN 114
           +G   E+  +    E   I +         L+ +K R+ +     GVPV     PS  V+
Sbjct: 83  YGFLSENPDLAMACEEAGITFVGPSAEILELTGNKARAVKAAREAGVPVLGSSQPSSNVD 142

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQLLIEQ 170
              + +   +  P  +K + GG   G+  ++    +   +  ++           + +E+
Sbjct: 143 EL-VAAADELGFPVFVKAVAGGGGRGMRRVEDPALLRESIEAAAREAESAFGDPTVFLEK 201

Query: 171 Y-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQ 228
             VD   +   ++ D   +V              ++        + PA  +  ++   + 
Sbjct: 202 AVVDPRHIEVQILADGEGNVI-----HLFERDCSVQRRHQKVVELAPAPNLDPELRDRIC 256

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             A    + IG R     +FL D   + VF  E+N 
Sbjct: 257 ADAVKFARQIGYRNAGTVEFLLDREGKHVFI-EMNP 291


>gi|225850411|ref|YP_002730645.1| carbamoyl-phosphate synthase large chain, N- section
           (Carbamoyl-phosphate synthetase ammonia chain)
           [Persephonella marina EX-H1]
 gi|225645104|gb|ACO03290.1| carbamoyl-phosphate synthase large chain, N- section
           (Carbamoyl-phosphate synthetase ammonia chain)
           [Persephonella marina EX-H1]
          Length = 561

 Score = 74.0 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 49/289 (16%), Positives = 103/289 (35%), Gaps = 38/289 (13%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQID---------------------VDRSVGLV 45
           G ++E + S   G   A AL++ G++V  ++                     +   +  +
Sbjct: 21  GQAAEFDYS---GTQGAKALKEEGYEVILVNSNPATIMTDPEVADKTYIEPLITPVIEKI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   +PD     L G    +  V    + IL+   +    +   A   + D+   K+ + 
Sbjct: 78  IERERPDALLPTLGGQTALNLAVDLYEKGILDKYNVKMIGANYEAIKKAEDRELFKEAME 137

Query: 102 SCGVPVCPSILVNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G+ +  S +V       +    I  P +I+P       G  +          +     
Sbjct: 138 KIGLEMPKSAVVKSLAEAEEIIDWIGFPVIIRPSFTLGGTGGSIAYNRDEFYYKVKAGLD 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
            +   ++L+E+ V G  E    VM D + + V   ++   D           +S  + PA
Sbjct: 198 ASPVHEVLLEESVLGWKEFEMEVMRDKNDNCVIICSIENLDPMGIHT----GDSITIAPA 253

Query: 218 K-IPLDIYKEVQRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
             +    Y+ ++  +    + IG   G S   F  +P + + + +E+N 
Sbjct: 254 MTLTDKEYQMLRDYSIAVIREIGVETGGSNVQFSQNPETGQFYVIEMNP 302


>gi|330976319|gb|EGH76377.1| pyruvate carboxylase subunit A [Pseudomonas syringae pv. aptata
           str. DSM 50252]
          Length = 333

 Score = 74.0 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 77/221 (34%), Gaps = 20/221 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            LH  +G   E+  +  I     I +            DK  +++ +   GVPV P    
Sbjct: 76  ALHPGYGFLSENAELADICAERGIKFIGPSAEVIRRMGDKTEARRSMIKAGVPVTPGTEG 135

Query: 114 NRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGD 164
           N   +D        I  P ++K   GG   GI      + +           + ++   +
Sbjct: 136 NVADIDEALAEGERIGYPVMLKATSGGGGRGIRRCNSREELEQAFPRVISEATKAFGSAE 195

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDI 223
             L +  V+   +   ++GD+  +V  +            K        + P  ++  + 
Sbjct: 196 VFLEKCIVNPKHIEAQILGDSFGNVVHLFERDCSIQRRNQKL-----IEIAPSPQLTPEQ 250

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              +  L+  A +A+G       +FL      +V+++E+N 
Sbjct: 251 RAYIGDLSVRAAKAVGYENAGTVEFLL--AEGEVYFMEMNT 289


>gi|297303047|ref|XP_002806104.1| PREDICTED: pyruvate carboxylase-like, partial [Macaca mulatta]
          Length = 548

 Score = 74.0 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 76/221 (34%), Gaps = 20/221 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            LH  +G   E+  +  I     I +            DK  +++ +   GVPV P    
Sbjct: 81  ALHPGYGFLSENAELADICAERGIKFIGPSAEVIRRMGDKTEARRSMIKAGVPVTPGTEG 140

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGD 164
            +      +     I  P ++K   GG   GI      + +           + ++   +
Sbjct: 141 NVADIAEALTEGDRIGYPVMLKATSGGGGRGIRRCNSREELEQAFPRVISEATKAFGSAE 200

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDI 223
             L +  V+   +   ++GD+  +V  +            K        + P  ++  + 
Sbjct: 201 VFLEKCIVNPKHIEAQILGDSFGNVVHLFERDCSIQRRNQKL-----IEIAPSPQLTPEQ 255

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              +  L+  A +A+G       +FL      +V+++E+N 
Sbjct: 256 RAYIGDLSVRAAKAVGYENAGTVEFLL--AEGEVYFMEMNT 294


>gi|70998310|ref|XP_753877.1| pyruvate carboxylase [Aspergillus fumigatus Af293]
 gi|66851513|gb|EAL91839.1| pyruvate carboxylase, putative [Aspergillus fumigatus Af293]
          Length = 646

 Score = 74.0 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 42/196 (21%), Positives = 77/196 (39%), Gaps = 11/196 (5%)

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ--HLISPPYVIKP 132
           + +     G      + DK+++K + +SC VPV PS               +  P +IK 
Sbjct: 97  IGVTVIGPGAEILEQTGDKLQAKALATSCSVPVLPSHSAQSLDEIRAFVEKVGYPVMIKA 156

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD--QLLIEQY-VDGIE-LTCGVMGDASLD 188
           + GG   GI +I + Q+  L  L + + +      + +E+  VDG   +   V+GD +  
Sbjct: 157 VDGGGGRGIRLIHQHQASELGSLVARARSESPSQTVFVEKAAVDGFHHVEVQVLGDGTGT 216

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                V         ++          P+ +   I ++V   A    + I  R +   +F
Sbjct: 217 -----VHHLHERDCSVQRRFQKIVECAPSLLDRSIIEKVSEAALRIARTIRYRSLGTFEF 271

Query: 249 LFDPLSRKVFWLEINV 264
           L    +   ++LEIN 
Sbjct: 272 LVSESTSDFYFLEINP 287


>gi|302880074|ref|YP_003848638.1| acetyl-CoA carboxylase, biotin carboxylase [Gallionella
           capsiferriformans ES-2]
 gi|302582863|gb|ADL56874.1| acetyl-CoA carboxylase, biotin carboxylase [Gallionella
           capsiferriformans ES-2]
          Length = 451

 Score = 74.0 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 80/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         L  DK+ +K  +   GVP  P +  
Sbjct: 77  AIHPGYGFLSENADFSERVEKCGFVFIGPRAETIRLMGDKVSAKIAMKKAGVPCVPGVEG 136

Query: 112 LVNRFTMD---SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
            +     +       I  P +IK   GG   G+ V+  + ++   +     ++ +  +  
Sbjct: 137 ALPENPAEIIKIARSIGYPVIIKASGGGGGRGMRVVHTEAALLGAVTMTRAEAQAAFNNP 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+Y++    +   V+ D   +   +            K          PA  +   
Sbjct: 197 TVYMEKYLENPRHIEFQVLADQHGNAVYLGERDCSMQRRNQK-----VMEEAPAPLLNPR 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +  ++      A + IG RG    +FL+   + + F++E+N 
Sbjct: 252 LRNKIGERCAEACRKIGYRGAGTFEFLY--ENGEFFFIEMNT 291


>gi|29655015|ref|NP_820707.1| biotin carboxylase [Coxiella burnetii RSA 493]
 gi|29542284|gb|AAO91221.1| biotin carboxylase [Coxiella burnetii RSA 493]
          Length = 448

 Score = 74.0 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 36/222 (16%), Positives = 79/222 (35%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---S 110
            +H  +G   E+      +E     +      A  L  +K+ + + +   G+P  P    
Sbjct: 77  AIHPGYGFLAENPNFCEQVEKSGFVFIGPSHEAIHLMGNKVSAIKAMKEAGLPCIPGSDG 136

Query: 111 ILVNRFTMD--SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGD 164
            L      +      I  P +IK   GG   G+ V+ ++  +   +     ++++    D
Sbjct: 137 ALGKDGDANLLIAEQIGYPILIKAAGGGGGRGMRVVHREAELLNAIAMTRTEAAAAFGTD 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
           ++ +E++++    +   V+GD       +            K          PA  I   
Sbjct: 197 KVYMEKFLENPRHIEIQVLGDGQGHAIHLGERDCSMQRRHQK-----VIEEAPAPGITPK 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
               +      A  A+  RG    +FL+   + + +++E+N 
Sbjct: 252 QRATIGERCVQACIAMNYRGAGTFEFLY--ENGEFYFIEMNT 291


>gi|15837709|ref|NP_298397.1| carbamoyl phosphate synthase large subunit [Xylella fastidiosa
           9a5c]
 gi|22095537|sp|Q9PEC1|CARB_XYLFA RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|9106062|gb|AAF83917.1|AE003946_8 carbamoyl-phosphate synthase large chain [Xylella fastidiosa 9a5c]
          Length = 1080

 Score = 74.0 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 52/278 (18%), Positives = 101/278 (36%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL   GF+V  +         D D            R+V  ++A  KPD    
Sbjct: 29  SGAQACKALRAEGFRVVLVNSNPATIMTDPDMADAVYIEPIHWRTVEKIIAKEKPDALLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      +LE   +    +   A  ++ D+   +  +   G+    + +
Sbjct: 89  TMGGQTALNCALDLADHGVLEKYGVELIGAKREAIRMAEDRELFRVAMQEIGLECPKAEV 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  ++ Q  +  P +I+P       G  +    Q     + +    +   ++L+E+
Sbjct: 149 AKSLERALEIQAKVGFPTIIRPSFTLGGTGGGITYNRQEFEEIIKRGLELSPVHEVLVEE 208

Query: 171 YVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            V G  E    V+ DAS + +   ++   D           +S  V PA+ +    Y+ +
Sbjct: 209 SVLGWKEFEMEVVRDASDNCIIVCSIENLDPMGVHT----GDSITVAPAQTLSDKEYQRL 264

Query: 228 QRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  DP + +V  +E+N 
Sbjct: 265 RDASIAVLRKIGVDTGGSNVQFGIDPQTGRVVVIEMNP 302



 Score = 66.3 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 33/199 (16%), Positives = 78/199 (39%), Gaps = 8/199 (4%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           LE   +P   +   +  L+ D+ R +++V   G+   P+         +     I  P V
Sbjct: 654 LEANGVPVIGTSPESIDLAEDRERFQKLVQQLGLRQPPNCTARTAEEALVLAREIGYPLV 713

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLD 188
           ++P        + ++  +  +   +  +   ++   +L+++++D  +E+   ++ D    
Sbjct: 714 VRPSYVLGGRAMEIVYGEADLARYVRDAVKVSNDSPVLLDRFLDNAVEVDVDIIADREGQ 773

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           V    V   +       +S  +S  + P  +      +++R      QA+   G+  + F
Sbjct: 774 VLIGGV--MEHIEEAGVHSGDSSCSLPPYSLSAATQDDLRRQVIRLAQALNVIGLMNTQF 831

Query: 249 LF---DPLSRKVFWLEINV 264
                D  S  V+ LE+N 
Sbjct: 832 AIQSNDDGSDIVYLLEVNP 850


>gi|318079425|ref|ZP_07986757.1| acetyl/propionyl CoA carboxylase subunit alpha [Streptomyces sp.
           SA3_actF]
          Length = 491

 Score = 74.0 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 41/229 (17%), Positives = 80/229 (34%), Gaps = 25/229 (10%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---- 109
            +H  +G   E+           + +      A  L  DK+R+K+ V + GVPV P    
Sbjct: 82  AVHPGYGFLAENAAFARACADAGLVFIGPPADAVDLMGDKIRAKETVKAAGVPVVPGSSG 141

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
           S L +    D+   I  P ++KP  GG   G+ ++ ++  +  ++  +          D 
Sbjct: 142 SGLDDEELADAAREIGMPVLLKPSAGGGGKGMRLVHEEALLAEEIAAARREARSSFGDDT 201

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           LL+E++V     +   V  D   +V  +   +        K             +     
Sbjct: 202 LLVERWVQRPRHIEIQVFADRHGNVIHLGERECSLQRRHQK----LIEEAPSVLLDEATR 257

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLS---------RKVFWLEINV 264
             +   A  A ++ G  G    +F+                 +++E+N 
Sbjct: 258 TAMGEAAVRAARSCGYEGAGTVEFIVPGPDPDAPAGTAPEAYYFMEMNT 306


>gi|318057639|ref|ZP_07976362.1| acetyl/propionyl CoA carboxylase subunit alpha [Streptomyces sp.
           SA3_actG]
          Length = 666

 Score = 74.0 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 41/229 (17%), Positives = 80/229 (34%), Gaps = 25/229 (10%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---- 109
            +H  +G   E+           + +      A  L  DK+R+K+ V + GVPV P    
Sbjct: 82  AVHPGYGFLAENAAFARACADAGLVFIGPPADAVDLMGDKIRAKETVKAAGVPVVPGSSG 141

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
           S L +    D+   I  P ++KP  GG   G+ ++ ++  +  ++  +          D 
Sbjct: 142 SGLDDEELADAAREIGMPVLLKPSAGGGGKGMRLVHEEALLAEEIAAARREARSSFGDDT 201

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           LL+E++V     +   V  D   +V  +   +        K             +     
Sbjct: 202 LLVERWVQRPRHIEIQVFADRHGNVIHLGERECSLQRRHQK----LIEEAPSVLLDEATR 257

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLS---------RKVFWLEINV 264
             +   A  A ++ G  G    +F+                 +++E+N 
Sbjct: 258 TAMGEAAVRAARSCGYEGAGTVEFIVPGPDPDAPAGTAPEAYYFMEMNT 306


>gi|159126388|gb|EDP51504.1| pyruvate carboxylase, putative [Aspergillus fumigatus A1163]
          Length = 646

 Score = 74.0 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 42/196 (21%), Positives = 77/196 (39%), Gaps = 11/196 (5%)

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ--HLISPPYVIKP 132
           + +     G      + DK+++K + +SC VPV PS               +  P +IK 
Sbjct: 97  IGVTVIGPGAEILEQTGDKLQAKALATSCSVPVLPSHSAQSLDEIRAFVEKVGYPVMIKA 156

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD--QLLIEQY-VDGIE-LTCGVMGDASLD 188
           + GG   GI +I + Q+  L  L + + +      + +E+  VDG   +   V+GD +  
Sbjct: 157 VDGGGGRGIRLIHQHQASELGSLVARARSESPSQTVFVEKAAVDGFHHVEVQVLGDGTGT 216

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                V         ++          P+ +   I ++V   A    + I  R +   +F
Sbjct: 217 -----VHHLHERDCSVQRRFQKIVECAPSLLDRSIIEKVSEAALRIARTIRYRSLGTFEF 271

Query: 249 LFDPLSRKVFWLEINV 264
           L    +   ++LEIN 
Sbjct: 272 LVSESTSDFYFLEINP 287


>gi|77410551|ref|ZP_00786912.1| carbamoyl-phosphate synthase, large subunit [Streptococcus
           agalactiae CJB111]
 gi|77163499|gb|EAO74449.1| carbamoyl-phosphate synthase, large subunit [Streptococcus
           agalactiae CJB111]
          Length = 1060

 Score = 74.0 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 29/214 (13%), Positives = 77/214 (35%), Gaps = 14/214 (6%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           L    +    + +     + ++ + +  + +  +P  P          +++   I  P +
Sbjct: 646 LNKAGVKILGTQLEDLDRAENRKQFEATLQALNIPQPPGFTATTEEEAVNAAQKIGYPVL 705

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           ++P        + +++ ++ +   +  +   +    +LI+ Y+ G E     + D     
Sbjct: 706 VRPSYVLGGRAMKIVENEEDLRHYMTTAVKASPDHPVLIDAYLIGKECEVDAISDGQ--- 762

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
             I +P    +       S +S  V P + +   I + +          + C G+    F
Sbjct: 763 -NILIPGIMEHIERAGVHSGDSMAVYPPQTLSETIIETIVDYTKRLAIGLNCIGMMNIQF 821

Query: 249 LFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277
           +     +KV+ +E+N       P ++ V+  P  
Sbjct: 822 VI--KDQKVYVIEVNPRASRTLPFLSKVTHIPMA 853



 Score = 73.2 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 58/315 (18%), Positives = 119/315 (37%), Gaps = 39/315 (12%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQID-------VDRSVGL--------------V 45
           G ++E + S   G     +L++ G++V  ++        D+ +                +
Sbjct: 21  GQAAEFDYS---GTQACLSLKEEGYQVVLVNSNPATIMTDKDIADKVYIEPITLEFVTRI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           L   +PD     L G  G +  +      ILE L +    + + A   + D+   KQ++ 
Sbjct: 78  LRKERPDALLPTLGGQTGLNMAMALSKNGILEELNVELLGTKLSAIDKAEDRDLFKQLME 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
               P+  S +VN     +     I  P +++P       G  +    + +     +   
Sbjct: 138 ELNQPIPESEIVNSVEEAIQFAEQIGYPLIVRPAFTLGGTGGGMCDNQEQLVDITTKGLK 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   Q LIE+ + G  E+   VM DA+ +   + V   + +   +   + +S    PA+
Sbjct: 198 LSPVTQCLIERSIAGFKEIEYEVMRDAADNA--LVVCNMENFD-PVGIHTGDSIVFAPAQ 254

Query: 219 IPLDIYKE-VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
              D+  + ++  +    +A+   G        DP S K + +E+N  P ++  S     
Sbjct: 255 TLSDVENQLLRDASLDIIRALKIEGGCNVQLALDPNSFKYYVIEVN--PRVSRSS--ALA 310

Query: 278 AAYAGYSFRELLLWM 292
           +   GY   +L   +
Sbjct: 311 SKATGYPIAKLAAKI 325


>gi|329942903|ref|ZP_08291682.1| acetyl-CoA carboxylase, biotin carboxylase [Chlamydophila psittaci
           Cal10]
 gi|332287496|ref|YP_004422397.1| acetyl-CoA carboxylase biotin carboxylase subunit [Chlamydophila
           psittaci 6BC]
 gi|313848075|emb|CBY17073.1| biotin carboxylase [Chlamydophila psittaci RD1]
 gi|325507254|gb|ADZ18892.1| acetyl-CoA carboxylase biotin carboxylase subunit [Chlamydophila
           psittaci 6BC]
 gi|328815163|gb|EGF85152.1| acetyl-CoA carboxylase, biotin carboxylase [Chlamydophila psittaci
           Cal10]
 gi|328914744|gb|AEB55577.1| acetyl-CoA carboxylase, biotin carboxylase [Chlamydophila psittaci
           6BC]
          Length = 451

 Score = 74.0 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 83/220 (37%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---S 110
            +H  +G   E+    +I E   + +      + A   DK+ +KQ+      PV P    
Sbjct: 76  AVHPGYGFLSENANFASICESCGLTFIGPSSESIATMGDKIAAKQLAKKVKCPVIPGSEG 135

Query: 111 ILVNRFT-MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS----IPLDLLQSSSWNHGDQ 165
           I+ +    +     I  P VIK + GG   GI ++K+             ++ +  +   
Sbjct: 136 IIKDEAEGLKIAEKIGFPIVIKAVAGGGGRGIRIVKEKDEFFRAFSAARAEAEAGFNNPN 195

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE++++    L   ++GD   +   +            K             +  ++ 
Sbjct: 196 VYIEKFIENPRHLEVQILGDKHGNYVHLGERDCTVQRRRQK----LIEETPSPILTPELR 251

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +V ++A    ++     +   +FL D   +K +++E+N 
Sbjct: 252 AKVGKVAVDLARSANYHSVGTVEFLLDK-DKKFYFMEMNT 290


>gi|260949973|ref|XP_002619283.1| hypothetical protein CLUG_00442 [Clavispora lusitaniae ATCC 42720]
 gi|238846855|gb|EEQ36319.1| hypothetical protein CLUG_00442 [Clavispora lusitaniae ATCC 42720]
          Length = 1864

 Score = 74.0 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 29/213 (13%), Positives = 71/213 (33%), Gaps = 12/213 (5%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS---ILVNR 115
           +G   E+          +I +      A      K  ++++    GVP+ P    +    
Sbjct: 753 YGFLSENADFADRCAREKIVFVGPSGDAIRKLGLKHSAREIAEKAGVPLVPGSGLVSSPE 812

Query: 116 FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQLLIEQY 171
                   +  P ++K   GG  +G+  +  ++ I         Q  S+     + +E++
Sbjct: 813 EARRIAAALEYPVMVKSTAGGGGIGLQKVDSEEDIERVFQTVQHQGQSYFGDAGVFLERF 872

Query: 172 VD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
           V+    +   + GD       +            K             +P    ++++  
Sbjct: 873 VENARHVEIQMFGDGYGKAIALGERDCSLQRRNQKI----VEETPAPNLPEATRQKMRSA 928

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
           A     ++  +     +F++D    + ++LE+N
Sbjct: 929 AEALGSSMNYKCAGTVEFIYDERRDEFYFLEVN 961


>gi|195026936|ref|XP_001986371.1| GH21324 [Drosophila grimshawi]
 gi|193902371|gb|EDW01238.1| GH21324 [Drosophila grimshawi]
          Length = 1196

 Score = 74.0 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 34/205 (16%), Positives = 78/205 (38%), Gaps = 17/205 (8%)

Query: 69  QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLI 124
           QA+++   + +        A   DKM +++     GVPV P     +      +      
Sbjct: 130 QAVID-AGLVFIGPSPKVVANMGDKMAARKAAIEAGVPVVPGTDGPVTTTEEALAFCDKH 188

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPL----DLLQSSSWNHGDQLLIEQYVD-GIELTC 179
             P + K   GG   G+ V++K   I         ++ +      + IE+Y+D    +  
Sbjct: 189 ELPVIFKAAYGGGGRGMRVVRKKDEIEENFNRASSEAKAAFGNGAIFIEKYIDRPRHIEV 248

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAI 238
            ++GD + ++  +            K        + PA ++P+++  ++   A    + +
Sbjct: 249 QLLGDKAGNIVHLYERDCSIQRRHQK-----VVEIAPAPRLPVEVRDKMTEAAVKLGKHV 303

Query: 239 GCRGISRSDFLFDPLSRKVFWLEIN 263
           G       +++ D      +++E+N
Sbjct: 304 GYENAGTVEYVCDESGG-FYFIEVN 327


>gi|163794702|ref|ZP_02188672.1| hypothetical protein BAL199_27121 [alpha proteobacterium BAL199]
 gi|159179975|gb|EDP64500.1| hypothetical protein BAL199_27121 [alpha proteobacterium BAL199]
          Length = 366

 Score = 74.0 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 53/279 (18%), Positives = 86/279 (30%), Gaps = 42/279 (15%)

Query: 22  CASALEDAGFKVSQIDVDRSVGLV--LAHLKPD-LAFNVLHG---NFGEDGLVQAILELL 75
             SALE  G  V   D       +  L     D + + V  G     G  G   A+  L 
Sbjct: 49  IRSALEAVGVAVRFADPTVPAEWIDWLRERPADTVVWPVTDGIRYYRGSGGS--AVARLF 106

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP-PYVIKPLK 134
                 +      L+ DK +   V  S GV V  + L+      S  L  P P+ +KP  
Sbjct: 107 GARSFGALPHVQHLAQDKAKCGAVAESLGVAVPRTGLMRDGRWLSPPLDGPGPWFVKPNT 166

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSS--WNHGDQLLIEQYVDGIELTCGV----------- 181
            G+ LGI    +  ++      S      + D  +++ +V G ++               
Sbjct: 167 LGAKLGIWADSRVDTVEQATALSGRIHARYRDDAVVQAFVPGFDVRVSYMAVDADPELKR 226

Query: 182 MGDASLDVTEIAVPKSDFYSYE--------------LKYSSLNSTHVLPAKIP-----LD 222
           +G   L+          F +                   S   +   +P  I       D
Sbjct: 227 LGVYRLETGGRGEAAGAFMTMADNVTLSGTADTEGTASASRGGTATFVPRMIDLFAEDPD 286

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
           +  E+  +A      +G R +   DF         + LE
Sbjct: 287 VATEIAAMARRVAVGLGLRDVFSLDFRVST-GGVPYLLE 324


>gi|120435282|ref|YP_860968.1| hypothetical protein GFO_0927 [Gramella forsetii KT0803]
 gi|117577432|emb|CAL65901.1| conserved hypothetical protein [Gramella forsetii KT0803]
          Length = 358

 Score = 74.0 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 47/246 (19%), Positives = 96/246 (39%), Gaps = 28/246 (11%)

Query: 77  IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL-ISPPYVIKPLKG 135
           I         + L  DK R+ Q++    +P+  + + ++  + +     + P V KP++G
Sbjct: 104 IEIVGQQPKDADLYDDKWRTNQLLKEQKLPIPRAKIFSKKNLKNNSFDFTFPIVTKPIRG 163

Query: 136 GSSLGIIVIKKDQSI-PLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA--------- 185
             S G+ V +  + +  L      S  +G ++ IE+Y+ G E+T  VM            
Sbjct: 164 RGSQGVHVAQNQKELFQLINELIDSDKYGKEVYIEEYLSGQEITITVMPPGKYLLQNKEE 223

Query: 186 ------SLDVTEIAVPKSDFYSYELKYS-SLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
                 SL   +     +    Y    +   NS+ +  ++   D    +      A + I
Sbjct: 224 RIHSYWSLPAIKRFNHHNGIAPYNGTVAIIENSSILSDSEQQKDEIILISEQCEKAAKII 283

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMT---------PVSIFPEMAAYAGYSFRELL 289
             +   R D   +  +   F  ++N++P MT           S+    A   G+++ +LL
Sbjct: 284 KAKAPIRIDCRAN-DNGDYFIFDLNMKPNMTGPSRSHRKDQDSLTSLAARKIGWNYEDLL 342

Query: 290 LWMVED 295
           + ++E 
Sbjct: 343 INLLEQ 348


>gi|94496350|ref|ZP_01302927.1| Carbamoyl-phosphate synthase L chain, ATP-binding protein
           [Sphingomonas sp. SKA58]
 gi|94424096|gb|EAT09120.1| Carbamoyl-phosphate synthase L chain, ATP-binding protein
           [Sphingomonas sp. SKA58]
          Length = 666

 Score = 74.0 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 36/223 (16%), Positives = 78/223 (34%), Gaps = 19/223 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H  +G   E    +  L+   I +      A A   DK+ SK++    GV V P  + 
Sbjct: 78  AVHPGYGFLSERESFRKALDAEGIIFVGPPANAIAAMGDKIESKKLAKEAGVNVVPGFVG 137

Query: 113 ---VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
                   +   + I  P ++K   GG   G+ +   +Q +      +          D+
Sbjct: 138 VIEDTDHAVKISNEIGYPVMMKASAGGGGKGMRLAYSEQDVREGFEATKREGLASFGDDR 197

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE++++    +   V+GD   ++  +   +        K             +  ++ 
Sbjct: 198 VFIEKFIESPRHIEIQVLGDQHGNIVYLNERECSIQRRHQK----VVEEAPSPFVSPEMR 253

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLF---DPLSRKVFWLEINV 264
           K++        +A+G       + +    D      ++LE+N 
Sbjct: 254 KKMGEQCVALARAVGYFSAGTVELIVSGEDKTGDGFYFLEMNT 296


>gi|326796323|ref|YP_004314143.1| acetyl-CoA carboxylase, biotin carboxylase [Marinomonas
           mediterranea MMB-1]
 gi|326547087|gb|ADZ92307.1| acetyl-CoA carboxylase, biotin carboxylase [Marinomonas
           mediterranea MMB-1]
          Length = 446

 Score = 74.0 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 35/222 (15%), Positives = 77/222 (34%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         L  DK+ + + + + GVP  P    
Sbjct: 77  AIHPGYGFLAENADFAEQVENSGFTFIGPKAETIRLMGDKVSAIKAMKAAGVPTVPGSNG 136

Query: 112 ---LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
                    +     I  P ++K   GG   G+ V+  + S+   +     ++ S+    
Sbjct: 137 PVPSDPEECIKIAREIGFPVIVKAAAGGGGRGMRVVHNEASLLKSISITQSEAGSYFGDS 196

Query: 165 QLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+++ +   +   V+ D   +   +           L+          PA  +  +
Sbjct: 197 TVYMEKFLQNPRHVEVQVIADGQGNAVHLY-----DRDCSLQRRHQKVLEEAPAPMLDPE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              +  +    A   IG RG    +FL+       +++E+N 
Sbjct: 252 SRAQCLQACVDACIKIGYRGAGTFEFLY--EDGGFYFIEMNT 291


>gi|322387503|ref|ZP_08061113.1| carbamoyl-phosphate synthase, large subunit [Streptococcus infantis
           ATCC 700779]
 gi|321142032|gb|EFX37527.1| carbamoyl-phosphate synthase, large subunit [Streptococcus infantis
           ATCC 700779]
          Length = 1058

 Score = 74.0 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 26/228 (11%), Positives = 76/228 (33%), Gaps = 19/228 (8%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYV 129
           L    +    + +     + D+   +Q +    +P  P            +   I  P +
Sbjct: 646 LAKAGVTILGTQVADLDRAEDRDLFEQALKDLDIPQPPGQTATNEEEAVLAARKIGFPVL 705

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS--- 186
           ++P        + +++ +  +   +  +   +    +L++ Y+ G E     + D     
Sbjct: 706 VRPSYVLGGRAMEIVENEDDLRSYMRTAVKASPDHPVLVDSYIVGQECEVDAISDGQNVL 765

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISR 245
           +      + ++  +S        +S  V P + +   + + +          + C G+  
Sbjct: 766 IPGIMEHIERAGVHS-------GDSMAVYPPQTLSQKVQETIADYTKRLAIGLNCLGMMN 818

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
             F+      KV+ +E+N +   T     P ++        ++   ++
Sbjct: 819 IQFVI--KDEKVYVIEVNPRASRT----VPFLSKVTNIPMAQVATKLI 860



 Score = 70.2 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 54/302 (17%), Positives = 115/302 (38%), Gaps = 37/302 (12%)

Query: 20  KACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNVL 58
           +AC S L++ G++V  ++        D+ +                +L   +PD     L
Sbjct: 32  QACLS-LKEEGYEVVLVNSNPATIMTDKEIADKVYIEPITLEFVTRILRKERPDALLPTL 90

Query: 59  HGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
            G  G +  ++     IL+ L +    + + A   + D+   KQ++     P+  S +VN
Sbjct: 91  GGQTGLNMAMELSKNGILDELGVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIVN 150

Query: 115 --RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                +     I  P +++P       G  +   ++ +          +   Q LIE+ +
Sbjct: 151 TVEEAVAFAATIGYPVIVRPAFTLGGTGGGMCANEEELREIAENGLKLSPVTQCLIERSI 210

Query: 173 DG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRL 230
            G  E+   VM D++ +   + V   + +   +   + +S    PA+ +     + ++  
Sbjct: 211 AGFKEIEYEVMRDSADNA--LVVCNMENFD-PVGIHTGDSIVFAPAQTMSDYENQMLRDA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    +A+   G        DP S K + +E+N  P ++  S     +   GY   +L  
Sbjct: 268 SLSIIRALKIEGGCNVQLALDPHSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325


>gi|221638923|ref|YP_002525185.1| 3-methylcrotonoyl-CoA carboxylase subunit alpha [Rhodobacter
           sphaeroides KD131]
 gi|221159704|gb|ACM00684.1| 3-methylcrotonoyl-CoA carboxylase, alpha subunit [Rhodobacter
           sphaeroides KD131]
          Length = 646

 Score = 74.0 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 44/227 (19%), Positives = 86/227 (37%), Gaps = 27/227 (11%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      +E   + +      A      K  +K +++  GVPV P    
Sbjct: 77  AIHPGYGFLSENPEFVEAVEAAGLVFIGPSAAAIRAMGLKDAAKALMAEAGVPVVPGY-- 134

Query: 114 NRFTMDSQHL------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----G 163
           +    + +HL      I  P +IK + GG   G+  +++ +     L  + +        
Sbjct: 135 HGADQEPEHLALMAQDIGYPVLIKAVAGGGGKGMRRVERAEEFAAALASARAEARTAFGN 194

Query: 164 DQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPL 221
           + +LIE+++D    +   V GD +  V              L+          PA  +  
Sbjct: 195 EAVLIEKWIDCPRHIELQVFGDGTDAVHLYE------RDCSLQRRHQKVIEEAPAPGMTP 248

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR----KVFWLEINV 264
            +   +   A  A +AIG RG    +F+ D  +     + +++E+N 
Sbjct: 249 GMRAAMGEAAVRAARAIGYRGAGTVEFIVDGSAGLNPDRFWFMEMNT 295


>gi|33151478|ref|NP_872831.1| carbamoyl phosphate synthase large subunit [Haemophilus ducreyi
           35000HP]
 gi|71152355|sp|Q7VP67|CARB_HAEDU RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|33147698|gb|AAP95220.1| carbamoyl-phosphate synthase, large subunit [Haemophilus ducreyi
           35000HP]
          Length = 1075

 Score = 74.0 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 49/278 (17%), Positives = 100/278 (35%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +         D D            +++  ++   +PD    
Sbjct: 29  SGAQAVKALREEGYKVILVNSNPATIMTDPDMADVTYIEPIQWQTLEKIIEKERPDAILP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      +L+   +    +   A   + D+ R K  ++  G+    S +
Sbjct: 89  TMGGQTALNCALALSKNGVLKKYGVELIGATEDAIDKAEDRGRFKDAMTKIGLNTPKSFI 148

Query: 113 VNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            + F     +Q  +  P +I+P       G  +            +    +   +LLIEQ
Sbjct: 149 CHSFEEAWQAQEQVGFPTLIRPSFTMGGSGGGIAYNRDEFQAICERGFEASPTHELLIEQ 208

Query: 171 YVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            V G  E    V+ D + + +   ++   D           +S  V PA+ +    Y+ +
Sbjct: 209 SVLGWKEYEMEVVRDKADNCIIVCSIENFDPMGVHT----GDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RNASLAVLREIGVDTGGSNVQFAINPANGEMIVIEMNP 302



 Score = 59.4 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 27/197 (13%), Positives = 76/197 (38%), Gaps = 10/197 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--QHLISPPYV 129
           LE   +    +   +   + D+ R +++++  G+    +               +  P V
Sbjct: 648 LEQNGVNIIGTSADSIDAAEDRARFQKILTDLGLKQPNNRTARNAEEAVKLAEEVGYPLV 707

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLD 188
           ++P        + ++     +   + ++ S ++   +L++ ++   IE+    + D+   
Sbjct: 708 VRPSYVLGGRAMQIVYNVDELNNYMQEAVSVSNDSPILLDHFLKNAIEVDVDCICDSEQV 767

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           +    +   +    +    S +S   LPA  +  ++  E++R       A+G +G+    
Sbjct: 768 LIGGIMQHVE----QAGIHSGDSACSLPAYSLTNEVQGEIRRQTSAMAFALGVKGLMNVQ 823

Query: 248 FLFDPLSRKVFWLEINV 264
           F     +  ++ LE+N 
Sbjct: 824 FAV--QNETIYVLEVNP 838


>gi|293607856|ref|ZP_06690167.1| acetyl-CoA carboxylase subunit A [Achromobacter piechaudii ATCC
           43553]
 gi|292813745|gb|EFF72915.1| acetyl-CoA carboxylase subunit A [Achromobacter piechaudii ATCC
           43553]
          Length = 448

 Score = 74.0 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 36/222 (16%), Positives = 81/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         L  DK+ +K+ +   GVPV P    
Sbjct: 77  AIHPGYGFLSENADFADRVEKSGFVFIGPRPDTIRLMGDKVSAKRAMIEAGVPVVPGSEG 136

Query: 112 LVNRFTMD---SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
            +     +       +  P +IK   GG   G+ V+  + ++   +     ++ +  +  
Sbjct: 137 ALPEDPQEIIRIAREVGYPVIIKAAGGGGGRGMRVVYTEAALLNAVTMTRSEAGAAFNNP 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
           ++ +E++++    +   V+ D   +   +            K          PA  I   
Sbjct: 197 EVYMEKFLENPRHVEIQVLADGGRNAVWLGERDCSMQRRHQK-----VIEEAPAPGIARR 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             + +      A + +G RG    +FLF   + + +++E+N 
Sbjct: 252 AIERIGDRCADACRKMGYRGAGTFEFLF--ENGEFYFIEMNT 291


>gi|255525687|ref|ZP_05392619.1| pyruvate carboxylase [Clostridium carboxidivorans P7]
 gi|296184792|ref|ZP_06853203.1| pyruvate carboxylase [Clostridium carboxidivorans P7]
 gi|255510589|gb|EET86897.1| pyruvate carboxylase [Clostridium carboxidivorans P7]
 gi|296050574|gb|EFG89997.1| pyruvate carboxylase [Clostridium carboxidivorans P7]
          Length = 1146

 Score = 74.0 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 41/249 (16%), Positives = 87/249 (34%), Gaps = 29/249 (11%)

Query: 38  VDRSVGLVLAHLKPDLAFN--------VLHGNFG---EDGLVQAILELLEIPYTHSGILA 86
           + ++ G V A+L  D   N         +H  +G   E+       E   + +       
Sbjct: 54  IGKNKGPVEAYLNIDEIINLALKKGVDAIHPGYGFLSENAEFARKCEEAGMEFIGPTAEM 113

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILV----NRFTMDSQHLISPPYVIKPLKGGSSLGII 142
                DK++SK    + GV   P +          ++   +   P ++K   GG   G+ 
Sbjct: 114 MDSLGDKIKSKIAAKNAGVATIPGVQKPIESEEDAVEFARVCGYPVMLKAAAGGGGRGMR 173

Query: 143 VIKKDQSIPL-----DLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPK 196
           ++  ++ +             ++   D + IE+YV +   +   V+GD   ++  +    
Sbjct: 174 IVLDEKDLIESYKSCKNEAKKAFGIDD-IFIEKYVQNPKHIEVQVLGDKHGNIVHLYERD 232

Query: 197 SDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255
                   K          PA  +  +    + + A    +++G R     +FL D    
Sbjct: 233 CSIQRRHQK-----VIEFTPAIALSEEKRNVICQDALKIAKSVGYRSAGTLEFLVDKNGN 287

Query: 256 KVFWLEINV 264
             +++E+N 
Sbjct: 288 H-YFIEMNP 295


>gi|312112027|ref|YP_003990343.1| carbamoyl-phosphate synthase, large subunit [Geobacillus sp.
           Y4.1MC1]
 gi|311217128|gb|ADP75732.1| carbamoyl-phosphate synthase, large subunit [Geobacillus sp.
           Y4.1MC1]
          Length = 1041

 Score = 74.0 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 60/308 (19%), Positives = 114/308 (37%), Gaps = 44/308 (14%)

Query: 11  EREVSLSSGKACASALEDAGFKVSQ-------IDVDRSVGLVLAHLKPDL--AFNVLHGN 61
           E + S  S  +   AL+  G++          +  D +V   L      L    NV+   
Sbjct: 572 EFDYS--SVHSVY-ALQKEGYETVLMNNNPETVSTDFAVADRLYFEPLTLEEVLNVIEAE 628

Query: 62  FGEDGLVQ----------AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
             +  +VQ            LE   +P             D+ R  Q++    +P  P +
Sbjct: 629 QIKKVIVQFGGQTAINLVKGLEEANVPLLGVTYDMIDQLEDRDRFYQLLEELDIPHVPGM 688

Query: 112 LVNRFTMD--SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
           + N       +   I  P +++P       G+ ++K +Q +   LL+     +   LLI+
Sbjct: 689 MANNEEELVLNAKKIGYPVLLRPSYVIGGRGMFIVKNEQQLR-ALLEQGMIAY--PLLID 745

Query: 170 QYVDGIELTCGVMGDAS---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYK 225
            Y+DG E    V  D +   L      V K+  +S        +S  VLPA+ I  +   
Sbjct: 746 AYLDGKEAEVDVAADGNDILLPTIIEHVEKAGVHS-------GDSYAVLPAQTIANEEQS 798

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285
           ++   A    + +  +GI    ++    + +V+ LE+N +   T     P ++   G   
Sbjct: 799 KIITYARKIVKKLQFKGIMNIQYVI--ANGQVYVLEVNPRASRT----VPVVSKATGIPL 852

Query: 286 RELLLWMV 293
            ++   ++
Sbjct: 853 AQIATKLL 860



 Score = 72.1 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 57/287 (19%), Positives = 110/287 (38%), Gaps = 35/287 (12%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQIDVD---------------------RSVGLV 45
           G ++E + S   G     AL++ G++V  ++ +                      SV  +
Sbjct: 21  GQAAEFDYS---GTQACIALKEEGYRVILVNNNPATIMTDEVHADAVYFEPLTVDSVEAI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +A  +PD       G  G +   Q     +LE   +    + I A     D+   + ++ 
Sbjct: 78  IAKERPDGLLATFGGQTGLNLAFQLHETGVLEKYGVKLLGTPIEAIKRGEDREAFRALMY 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G PV  S ++      +     I  P +I+P       G  + +  +     + +  +
Sbjct: 138 ELGEPVPESEIITNVDEAVAFAEKIGFPIIIRPAYTLGGTGGGIAETMEQFIALVEKGLA 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   Q LIE+ V G  E+   VM D +   T I V   +     +   + +S  V P++
Sbjct: 198 ESPITQCLIERSVAGYKEIEYEVMRDNT--NTCITVCNMENVD-PVGIHTGDSIVVAPSQ 254

Query: 219 -IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +  + Y+ ++  A     A+G  G     F  DP S++ + +E+N 
Sbjct: 255 TLTDEEYQMLRTSAIKIISALGIIGGCNIQFALDPFSKRYYLIEVNP 301


>gi|239813345|ref|YP_002942255.1| carbamoyl-phosphate synthase L chain ATP-binding [Variovorax
           paradoxus S110]
 gi|239799922|gb|ACS16989.1| Carbamoyl-phosphate synthase L chain ATP-binding [Variovorax
           paradoxus S110]
          Length = 649

 Score = 74.0 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 69/220 (31%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+           + +      A     DK  +K+++ + GVP  P    
Sbjct: 78  AVHPGYGFLAENADFAQACRDAGLVFVGPSPEAIRAMGDKAAAKRLMQAAGVPCIPGYQG 137

Query: 112 --LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS----IPLDLLQSSSWNHGDQ 165
                         I  P +IK   GG   G+ +    +S    +     ++        
Sbjct: 138 EDQSAATLAAEAARIGWPVMIKATAGGGGRGMRLAPSAESFAELLQSAQSEALHAFGDAN 197

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           +++E  +     +   V  D   +   +            K             +   + 
Sbjct: 198 VILELAIAAPRHIEIQVFADRHGNAIHLGERDCSVQRRHQK----LIEESPSPAVSEALR 253

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +   A  A +AIG  G    +FL D    + +++E+N 
Sbjct: 254 ERMGATAVAATRAIGYEGAGTLEFLLDA-DGQYWFMEMNT 292


>gi|77414495|ref|ZP_00790643.1| carbamoyl-phosphate synthase, large subunit [Streptococcus
           agalactiae 515]
 gi|77159445|gb|EAO70608.1| carbamoyl-phosphate synthase, large subunit [Streptococcus
           agalactiae 515]
          Length = 1060

 Score = 74.0 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 29/214 (13%), Positives = 77/214 (35%), Gaps = 14/214 (6%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           L    +    + +     + ++ + +  + +  +P  P          +++   I  P +
Sbjct: 646 LNKAGVKILGTQLEDLDRAENRKQFEATLQALNIPQPPGFTATTEEEAVNAAQKIGYPVL 705

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           ++P        + +++ ++ +   +  +   +    +LI+ Y+ G E     + D     
Sbjct: 706 VRPSYVLGGRAMKIVENEEDLRHYMTTAVKASPDHPVLIDAYLIGKECEVDAISDGQ--- 762

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
             I +P    +       S +S  V P + +   I + +          + C G+    F
Sbjct: 763 -NILIPGIMEHIERAGVHSGDSMAVYPPQTLSETIIETIVDYTKRLAIGLNCIGMMNIQF 821

Query: 249 LFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277
           +     +KV+ +E+N       P ++ V+  P  
Sbjct: 822 VI--KDQKVYVIEVNPRASRTLPFLSKVTHIPMA 853



 Score = 73.2 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 58/315 (18%), Positives = 119/315 (37%), Gaps = 39/315 (12%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQID-------VDRSVGL--------------V 45
           G ++E + S   G     +L++ G++V  ++        D+ +                +
Sbjct: 21  GQAAEFDYS---GTQACLSLKEEGYQVVLVNSNPATIMTDKDIADKVYIEPITLEFVTRI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           L   +PD     L G  G +  +      ILE L +    + + A   + D+   KQ++ 
Sbjct: 78  LRKERPDALLPTLGGQTGLNMAMALSKNGILEELNVELLGTKLSAIDKAEDRDLFKQLME 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
               P+  S +VN     +     I  P +++P       G  +    + +     +   
Sbjct: 138 ELNQPIPESEIVNSVEEAIQFAEQIGYPLIVRPAFTLGGTGGGMCDNQEQLVDITTKGLK 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   Q LIE+ + G  E+   VM DA+ +   + V   + +   +   + +S    PA+
Sbjct: 198 LSPVTQCLIERSIAGFKEIEYEVMRDAADNA--LVVCNMENFD-PVGIHTGDSIVFAPAQ 254

Query: 219 IPLDIYKE-VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
              D+  + ++  +    +A+   G        DP S K + +E+N  P ++  S     
Sbjct: 255 TLSDVENQLLRDASLDIIRALKIEGGCNVQLALDPNSFKYYVIEVN--PRVSRSS--ALA 310

Query: 278 AAYAGYSFRELLLWM 292
           +   GY   +L   +
Sbjct: 311 SKATGYPIAKLAAKI 325


>gi|297180437|gb|ADI16652.1| biotin carboxylase [uncultured Rhodobacterales bacterium
           HF0010_04M21]
          Length = 446

 Score = 74.0 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 48/290 (16%), Positives = 94/290 (32%), Gaps = 51/290 (17%)

Query: 13  EVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFN---------------- 56
           E++L         L D G + + I   R   L L     D+A+                 
Sbjct: 13  EIALR----ILRTLRDMGIEAAIIH-GREDRLSLPVQMADIAYPNYRSNPLDSYLDIEAV 67

Query: 57  ----------VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103
                      +H  +G   E+    A LE   I +         L  DK+ ++  + + 
Sbjct: 68  VQAAKELECDAVHPGYGFLAENAAFVARLEEEGITFIGPASGVITLLGDKIEARAAMEAA 127

Query: 104 GVPVCPSILVNRFTMDSQHLI----SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ--- 156
           G+P          + D    +      P +IK   GG  +G+ +++K       L     
Sbjct: 128 GLPTAKGSSEPIASADVASALADDIGYPVIIKAAAGGGGIGMQIVQKADEFESALKLCQS 187

Query: 157 -SSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHV 214
            + S    +++ +E+Y+ G   +   V+ D                    K         
Sbjct: 188 RAKSAFGDERVFVEKYIQGAQHVEFQVLADGK-KAIHFGERFCSIQRRHQKLVEEG---- 242

Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
               +  +   E+  L     +A+G +G++  +F     +   ++LE+N 
Sbjct: 243 --PWLSDEKRAEIGALVCKGAEAVGYKGLATFEF-LRDANGDFYFLEVNP 289


>gi|295401640|ref|ZP_06811607.1| carbamoyl-phosphate synthase, large subunit [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|294976260|gb|EFG51871.1| carbamoyl-phosphate synthase, large subunit [Geobacillus
           thermoglucosidasius C56-YS93]
          Length = 1041

 Score = 74.0 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 60/308 (19%), Positives = 114/308 (37%), Gaps = 44/308 (14%)

Query: 11  EREVSLSSGKACASALEDAGFKVSQ-------IDVDRSVGLVLAHLKPDL--AFNVLHGN 61
           E + S  S  +   AL+  G++          +  D +V   L      L    NV+   
Sbjct: 572 EFDYS--SVHSVY-ALQKEGYETVLMNNNPETVSTDFAVADRLYFEPLTLEEVLNVIEAE 628

Query: 62  FGEDGLVQ----------AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
             +  +VQ            LE   +P             D+ R  Q++    +P  P +
Sbjct: 629 QIKKVIVQFGGQTAINLVKGLEEANVPLLGVTYDMIDQLEDRDRFYQLLEELDIPHVPGM 688

Query: 112 LVNRFTMD--SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
           + N       +   I  P +++P       G+ ++K +Q +   LL+     +   LLI+
Sbjct: 689 MANNEEELVLNAKKIGYPVLLRPSYVIGGRGMFIVKNEQQLR-ALLEQGMIAY--PLLID 745

Query: 170 QYVDGIELTCGVMGDAS---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYK 225
            Y+DG E    V  D +   L      V K+  +S        +S  VLPA+ I  +   
Sbjct: 746 AYLDGKEAEVDVAADGNDMLLPTIIEHVEKAGVHS-------GDSYAVLPAQTIANEEQS 798

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285
           ++   A    + +  +GI    ++    + +V+ LE+N +   T     P ++   G   
Sbjct: 799 KIITYARKIVKKLQFKGIMNIQYVI--ANGQVYVLEVNPRASRT----VPVVSKATGIPL 852

Query: 286 RELLLWMV 293
            ++   ++
Sbjct: 853 AQIATKLL 860



 Score = 72.5 bits (177), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 57/287 (19%), Positives = 110/287 (38%), Gaps = 35/287 (12%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQIDVD---------------------RSVGLV 45
           G ++E + S   G     AL++ G++V  ++ +                      SV  +
Sbjct: 21  GQAAEFDYS---GTQACIALKEEGYRVILVNNNPATIMTDEVHADAVYFEPLTVDSVEAI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +A  +PD       G  G +   Q     +LE   +    + I A     D+   + ++ 
Sbjct: 78  IAKERPDGLLATFGGQTGLNLAFQLHETGVLEKYGVKLLGTPIEAIKRGEDREAFRALMY 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G PV  S ++      +     I  P +I+P       G  + +  +     + +  +
Sbjct: 138 ELGEPVPESEIITNVDEAVAFAEKIGFPIIIRPAYTLGGTGGGIAETMEQFIALVEKGLA 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   Q LIE+ V G  E+   VM D +   T I V   +     +   + +S  V P++
Sbjct: 198 ESPITQCLIERSVAGYKEIEYEVMRDNT--NTCITVCNMENVD-PVGIHTGDSIVVAPSQ 254

Query: 219 -IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +  + Y+ ++  A     A+G  G     F  DP S++ + +E+N 
Sbjct: 255 TLTDEEYQMLRASAIKIISALGIIGGCNIQFALDPFSKRYYLIEVNP 301


>gi|238897318|ref|YP_002922995.1| acetyl CoA carboxylase, biotin carboxylase subunit [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
 gi|229465073|gb|ACQ66847.1| acetyl CoA carboxylase, biotin carboxylase subunit [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
          Length = 447

 Score = 74.0 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 78/221 (35%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      +E     +         L  DK+ +   +   GVP  P    
Sbjct: 77  AIHPGYGFLAENADFAEQIECSGFVFIGPKAETIRLMGDKVSAINAMKKAGVPCVPGSDG 136

Query: 114 NRFTMDSQ-----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
                + Q       I  P +IK   GG   G+ V+  D+ +   +     ++ +  + D
Sbjct: 137 PLGEDNIQNSRFAERIGYPVIIKASGGGGGRGMRVVHTDKDLAQAISMTRAEAKAAFNND 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            + +E+Y++    +   V+ D   +   +A           K             I   +
Sbjct: 197 MVYMEKYLENPRHIEIQVLADKHGNAIYLAERDCSMQRRHQKVL----EEAPAPGITHGM 252

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +++      A Q IG  G    +FL+   + + +++E+N 
Sbjct: 253 RRQIGERCVQACQDIGYHGAGTFEFLY--ENGEFYFIEMNT 291


>gi|254490383|ref|ZP_05103572.1| acetyl-CoA carboxylase, biotin carboxylase [Methylophaga
           thiooxidans DMS010]
 gi|224464516|gb|EEF80776.1| acetyl-CoA carboxylase, biotin carboxylase [Methylophaga
           thiooxydans DMS010]
          Length = 446

 Score = 74.0 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 36/222 (16%), Positives = 79/222 (35%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      +E     +         L  DK+ + + + + GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAERVEESGFIFIGPRAETIRLMGDKVSAIKAMKTAGVPCVPGSDG 136

Query: 114 NRFTMDS-----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGD 164
                D+        I  P +IK   GG   G+  +  +  +   +     ++ +  + D
Sbjct: 137 PLGNDDATNLRLAREIGYPIIIKAAGGGGGRGMREVHSEAHLLNAIALTKSEARAAFNND 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E++++    +   V+ D   +   +            K          PA  I  +
Sbjct: 197 VVYMEKFLENPRHIEFQVLSDQHGNAIHLGERDCSMQRRHQK-----VVEEAPAPGITPE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +   + ++   A   IG RG    +FL+     + +++E+N 
Sbjct: 252 MRARMGKICADACVRIGYRGAGTFEFLY--QDGEFYFIEMNT 291


>gi|258542492|ref|YP_003187925.1| urea amidolyase [Acetobacter pasteurianus IFO 3283-01]
 gi|256633570|dbj|BAH99545.1| urea amidolyase [Acetobacter pasteurianus IFO 3283-01]
 gi|256636629|dbj|BAI02598.1| urea amidolyase [Acetobacter pasteurianus IFO 3283-03]
 gi|256639682|dbj|BAI05644.1| urea amidolyase [Acetobacter pasteurianus IFO 3283-07]
 gi|256642738|dbj|BAI08693.1| urea amidolyase [Acetobacter pasteurianus IFO 3283-22]
 gi|256645793|dbj|BAI11741.1| urea amidolyase [Acetobacter pasteurianus IFO 3283-26]
 gi|256648846|dbj|BAI14787.1| urea amidolyase [Acetobacter pasteurianus IFO 3283-32]
 gi|256654890|dbj|BAI20817.1| urea amidolyase [Acetobacter pasteurianus IFO 3283-12]
          Length = 1179

 Score = 74.0 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 31/220 (14%), Positives = 74/220 (33%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E       L    I +         +   K  ++++     VP+ P   +
Sbjct: 77  AVHPGYGFLSERAEFAEKLAERGIRFMGPRPEHMRMFGLKHTARELAKQNNVPLLPGSDI 136

Query: 114 NRFTMDSQ---HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQL 166
                ++      I  P ++K   GG  +G+ V   +  +       S          ++
Sbjct: 137 LNSADEAAIEATRIGYPVMLKSTAGGGGIGMQVCHNETELRDCFAAVSRMGGNNFGDARV 196

Query: 167 LIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIY 224
            +E+++     +   + GD   ++  +           L+  +       PA  +     
Sbjct: 197 FLEKFIACARHVEVQIFGDGKGNILTLGE-----RDCSLQRRNQKVIEETPAPGLSDTTR 251

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + ++  A     A+        +F++D  S + ++LE+N 
Sbjct: 252 QGLREAARALGAAVAYESAGTVEFIYDTESGEFYFLEVNT 291


>gi|213968514|ref|ZP_03396657.1| acetyl-CoA carboxylase, biotin carboxylase [Pseudomonas syringae
           pv. tomato T1]
 gi|301384756|ref|ZP_07233174.1| acetyl-CoA carboxylase subunit A [Pseudomonas syringae pv. tomato
           Max13]
 gi|302062461|ref|ZP_07254002.1| acetyl-CoA carboxylase subunit A [Pseudomonas syringae pv. tomato
           K40]
 gi|302133172|ref|ZP_07259162.1| acetyl-CoA carboxylase subunit A [Pseudomonas syringae pv. tomato
           NCPPB 1108]
 gi|213926802|gb|EEB60354.1| acetyl-CoA carboxylase, biotin carboxylase [Pseudomonas syringae
           pv. tomato T1]
          Length = 471

 Score = 74.0 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 77/221 (34%), Gaps = 20/221 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            LH  +G   E+  +  I     I +            DK  +++ +   GVPV P    
Sbjct: 76  ALHPGYGFLSENAELADICTERGIKFIGPSAEVIRRMGDKTEARRSMIKAGVPVTPGTEG 135

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGD 164
            +   +  +     I  P ++K   GG   GI      Q +           + ++   +
Sbjct: 136 NVADIKEALVEGERIGYPVMLKATSGGGGRGIRRCNSRQELEQAFPRVISEATKAFGSAE 195

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDI 223
             L +  V+   +   ++GD+  +V  +            K        + P  ++  + 
Sbjct: 196 VFLEKCIVNPKHIEAQILGDSFGNVVHLFERDCSIQRRNQKL-----IEIAPSPQLTPEQ 250

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              +  L+  A +A+G       +FL      +V+++E+N 
Sbjct: 251 RAYIGDLSVRAAKAVGYENAGTVEFLL--AEGEVYFMEMNT 289


>gi|146280582|ref|YP_001170735.1| acetyl-CoA carboxylase subunit A [Pseudomonas stutzeri A1501]
 gi|145568787|gb|ABP77893.1| acetyl-CoA carboxylase, biotin carboxylase [Pseudomonas stutzeri
           A1501]
          Length = 558

 Score = 74.0 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 73/221 (33%), Gaps = 20/221 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            LH  +G   E+  +  I     I +            DK  +++ +   GVPV P    
Sbjct: 163 ALHPGYGFLSENAELAEICAERGIKFVGPSADVIRRMGDKTEARRSMIKAGVPVTPGTEG 222

Query: 114 N----RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGD 164
           N       +     I  P ++K   GG   GI        +           + ++   +
Sbjct: 223 NVKDLAEALREAERIGYPVMLKATSGGGGRGIRRCNSQAELESAYPRVISEATKAFGSAE 282

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDI 223
             L +  V+   +   V+ D     +             ++  +     + P  ++  + 
Sbjct: 283 VFLEKCIVEPKHIEAQVLAD-----SFGNTVHLFERDCSIQRRNQKLIEIAPSPQLTPEQ 337

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              +  LA  A +A+G       +FL      +V+++E+N 
Sbjct: 338 RAYIGDLAVRAAKAVGYENAGTVEFLL--ADGEVYFMEMNT 376


>gi|30021975|ref|NP_833606.1| carbamoyl phosphate synthase large subunit [Bacillus cereus ATCC
           14579]
 gi|296504381|ref|YP_003666081.1| carbamoyl phosphate synthase large subunit [Bacillus thuringiensis
           BMB171]
 gi|81433833|sp|Q819S3|CARB_BACCR RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|29897531|gb|AAP10807.1| Carbamoyl-phosphate synthase large chain [Bacillus cereus ATCC
           14579]
 gi|296325433|gb|ADH08361.1| carbamoyl phosphate synthase large subunit [Bacillus thuringiensis
           BMB171]
          Length = 1072

 Score = 74.0 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 49/314 (15%), Positives = 114/314 (36%), Gaps = 37/314 (11%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQIDVD---------------------RSVGLV 45
           G ++E + S   G     +L++ G+KV  ++ +                       V  +
Sbjct: 21  GQAAEFDYS---GTQACQSLKEEGYKVILVNSNPATIMTDTATADKVYIEPLTLEFVSRI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   +PD     L G  G +  V+     +L+   +    + + A   + D+   + ++ 
Sbjct: 78  IRKERPDAILPTLGGQTGLNMAVELAKSGVLDECGVEILGTKLSAIEQAEDRDLFRTLMQ 137

Query: 102 SCGVPVCPSILVNRFTMD--SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
               P  PS +++         + I  P +++P       G  +   ++ +   +     
Sbjct: 138 DLNEPTPPSEIIHNLDEAYGFVNEIGYPVIVRPAFTLGGTGGGICHNEEELIEIVTSGLK 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   Q L+E+ + G  E+   VM D++ +   I V   +       ++  +        
Sbjct: 198 HSPVTQCLLEKSIAGCKEIEYEVMRDSNDNA--IVVCNMENIDPVGVHTGDSIVVAPSQT 255

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278
           +    Y+ ++  +    +A+G  G        DP S + + +E+N  P ++  S     +
Sbjct: 256 LSDREYQMLRNTSLRIIRALGIEGGCNVQLALDPYSFQYYVIEVN--PRVSRSS--ALAS 311

Query: 279 AYAGYSFRELLLWM 292
              GY   +L   +
Sbjct: 312 KATGYPIAKLAAKI 325



 Score = 65.5 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 37/283 (13%), Positives = 100/283 (35%), Gaps = 39/283 (13%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ------ 69
           A+++AG++   I         D   S  L    L  +   +++     E  +VQ      
Sbjct: 580 AIKEAGYEAIIINNNPETVSTDFSISDKLYFEPLTIEDVMHIIDLEKPEGVIVQFGGQTA 639

Query: 70  ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHL 123
               A LE   +    + +     + D+ + +  ++  G+P             +     
Sbjct: 640 INLAAKLEEHGVKILGTSLEDLDRAEDRDKFEAALTKLGIPQPVGKTATTVEQAVAIAEE 699

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + ++ + + +   +  +   +    +LI++Y+ G E+    + 
Sbjct: 700 IGYPVLVRPSYVLGGRAMEIVYRQEELLHYMKNAVKVHADHPVLIDRYMVGKEIEVDAIS 759

Query: 184 DAS---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIG 239
           D     +      + ++  +S        +S  V P + +   + +++        + + 
Sbjct: 760 DGENVFIPGIMEHIERAGVHS-------GDSIGVYPPQSLSEKLKEQIIEHTIALGKGLN 812

Query: 240 CRGISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277
             G+    F+      +V+ +E+N       P ++ ++  P  
Sbjct: 813 IVGLLNIQFVVFK--DQVYVIEVNPRASRTVPFLSKITGVPMA 853


>gi|25011128|ref|NP_735523.1| carbamoyl phosphate synthase large subunit [Streptococcus
           agalactiae NEM316]
 gi|60389788|sp|Q8E5F5|CARB_STRA3 RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|23095527|emb|CAD46736.1| Unknown [Streptococcus agalactiae NEM316]
          Length = 1060

 Score = 74.0 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 29/214 (13%), Positives = 77/214 (35%), Gaps = 14/214 (6%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           L    +    + +     + ++ + +  + +  +P  P          +++   I  P +
Sbjct: 646 LNKAGVKILGTQLEDLDRAENRKQFEATLQALNIPQPPGFTATTEEEAVNAAQKIGYPVL 705

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           ++P        + +++ ++ +   +  +   +    +LI+ Y+ G E     + D     
Sbjct: 706 VRPSYVLGGRAMKIVENEEDLRHYMTTAVKASPDHPVLIDAYLIGKECEVDAISDGQ--- 762

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
             I +P    +       S +S  V P + +   I + +          + C G+    F
Sbjct: 763 -NILIPGIMEHIERAGVHSGDSMAVYPPQTLSETIIETIVDYTKRLAIGLNCIGMMNIQF 821

Query: 249 LFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277
           +     +KV+ +E+N       P ++ V+  P  
Sbjct: 822 VI--KDQKVYVIEVNPRASRTLPFLSKVTHIPMA 853



 Score = 73.2 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 58/315 (18%), Positives = 119/315 (37%), Gaps = 39/315 (12%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQID-------VDRSVGL--------------V 45
           G ++E + S   G     +L++ G++V  ++        D+ +                +
Sbjct: 21  GQAAEFDYS---GTQACLSLKEEGYQVVLVNSNPATIMTDKDIADKVYIEPITLEFVTRI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           L   +PD     L G  G +  +      ILE L +    + + A   + D+   KQ++ 
Sbjct: 78  LRKERPDALLPTLGGQTGLNMAMALSKNGILEELNVELLGTKLSAIDKAEDRDLFKQLME 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
               P+  S +VN     +     I  P +++P       G  +    + +     +   
Sbjct: 138 ELNQPIPESEIVNSVEEAIQFAEQIGYPLIVRPAFTLGGTGGGMCDNQEQLVDITTKGLK 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   Q LIE+ + G  E+   VM DA+ +   + V   + +   +   + +S    PA+
Sbjct: 198 LSPVTQCLIERSIAGFKEIEYEVMRDAADNA--LVVCNMENFD-PVGIHTGDSIVFAPAQ 254

Query: 219 IPLDIYKE-VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
              D+  + ++  +    +A+   G        DP S K + +E+N  P ++  S     
Sbjct: 255 TLSDVENQLLRDASLDIIRALKIEGGCNVQLALDPNSFKYYVIEVN--PRVSRSS--ALA 310

Query: 278 AAYAGYSFRELLLWM 292
           +   GY   +L   +
Sbjct: 311 SKATGYPIAKLAAKI 325


>gi|330503605|ref|YP_004380474.1| 3-methylcrotonoyl-CoA carboxylase subunit alpha [Pseudomonas
           mendocina NK-01]
 gi|328917891|gb|AEB58722.1| 3-methylcrotonoyl-CoA carboxylase, alpha subunit [Pseudomonas
           mendocina NK-01]
          Length = 642

 Score = 74.0 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 81/220 (36%), Gaps = 19/220 (8%)

Query: 58  LHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
           +H  +G   E+      +E   + +      A      K  +K ++ + GVP+ P    +
Sbjct: 78  IHPGYGFLSENAGFARAIEQAGLIFLGPPASAIDAMGSKSAAKSLMEAAGVPLVPGYHGD 137

Query: 115 RFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL----DLLQSSSWNHGDQL 166
           +  +D    +   I  P ++K   GG   G+ V + +  +         ++ S     ++
Sbjct: 138 KQDLDTFREAAARIGYPVLLKAAAGGGGKGMKVAESEAQLAETLESAQREAQSAFGDSRM 197

Query: 167 LIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIY 224
           L+E+YV     +   V  D   +   +            K          PA  +  ++ 
Sbjct: 198 LVEKYVLKPRHVEIQVFADQHGNCLYLNERDCSIQRRHQK-----VVEEAPAPGLSPELR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +   A  A QAIG  G    +FL D      F++E+N 
Sbjct: 253 RAMGEAAVKAAQAIGYVGAGTVEFLLDER-GDFFFMEMNT 291


>gi|218232482|ref|YP_002368686.1| carbamoyl phosphate synthase large subunit [Bacillus cereus B4264]
 gi|226700920|sp|B7H6M2|CARB_BACC4 RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|218160439|gb|ACK60431.1| carbamoyl-phosphate synthase, large subunit [Bacillus cereus B4264]
          Length = 1072

 Score = 74.0 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 49/314 (15%), Positives = 114/314 (36%), Gaps = 37/314 (11%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQIDVD---------------------RSVGLV 45
           G ++E + S   G     +L++ G+KV  ++ +                       V  +
Sbjct: 21  GQAAEFDYS---GTQACQSLKEEGYKVILVNSNPATIMTDTATADKVYIEPLTLEFVSRI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   +PD     L G  G +  V+     +L+   +    + + A   + D+   + ++ 
Sbjct: 78  IRKERPDAILPTLGGQTGLNMAVELAKSGVLDECGVEILGTKLSAIEQAEDRDLFRTLMQ 137

Query: 102 SCGVPVCPSILVNRFTMD--SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
               P  PS +++         + I  P +++P       G  +   ++ +   +     
Sbjct: 138 DLNEPTPPSEIIHNLDEAYGFVNEIGYPVIVRPAFTLGGTGGGICHNEEELIEIVTSGLK 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   Q L+E+ + G  E+   VM D++ +   I V   +       ++  +        
Sbjct: 198 HSPVTQCLLEKSIAGCKEIEYEVMRDSNDNA--IVVCNMENIDPVGVHTGDSIVVAPSQT 255

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278
           +    Y+ ++  +    +A+G  G        DP S + + +E+N  P ++  S     +
Sbjct: 256 LSDREYQMLRNTSLRIIRALGIEGGCNVQLALDPYSFQYYVIEVN--PRVSRSS--ALAS 311

Query: 279 AYAGYSFRELLLWM 292
              GY   +L   +
Sbjct: 312 KATGYPIAKLAAKI 325



 Score = 65.5 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 37/283 (13%), Positives = 100/283 (35%), Gaps = 39/283 (13%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ------ 69
           A+++AG++   I         D   S  L    L  +   +++     E  +VQ      
Sbjct: 580 AIKEAGYEAIIINNNPETVSTDFSISDKLYFEPLTIEDVMHIIDLEKPEGVIVQFGGQTA 639

Query: 70  ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHL 123
               A LE   +    + +     + D+ + +  ++  G+P             +     
Sbjct: 640 INLAAKLEEHGVKILGTSLEDLDRAEDRDKFEAALTKLGIPQPVGKTATTVEQAVAIAEE 699

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + ++ + + +   +  +   +    +LI++Y+ G E+    + 
Sbjct: 700 IGYPVLVRPSYVLGGRAMEIVYRQEELLHYMKNAVKVHADHPVLIDRYMVGKEIEVDAIS 759

Query: 184 DAS---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIG 239
           D     +      + ++  +S        +S  V P + +   + +++        + + 
Sbjct: 760 DGENVFIPGIMEHIERAGVHS-------GDSIGVYPPQSLSEKLKEQIIEHTIALGKGLN 812

Query: 240 CRGISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277
             G+    F+      +V+ +E+N       P ++ ++  P  
Sbjct: 813 IVGLLNIQFVVFK--DQVYVIEVNPRASRTVPFLSKITGVPMA 853


>gi|330898723|gb|EGH30142.1| pyruvate carboxylase subunit A [Pseudomonas syringae pv. japonica
           str. M301072PT]
          Length = 371

 Score = 74.0 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 78/221 (35%), Gaps = 20/221 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            LH  +G   E+  +  I     I +            DK  +++ +   GVPV P    
Sbjct: 76  ALHPGYGFLSENAELADICAERGIKFIGPSAEVIRRMGDKTEARRSMIKAGVPVTPGTEG 135

Query: 114 NRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGD 164
           N   +D        I  P ++K   GG   GI      + +           + ++   +
Sbjct: 136 NVADIDEALAEGERIGYPVMLKATSGGGGRGIRRCNSREELEQAFPRVISEATKAFGSAE 195

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDI 223
             L +  V+   +   ++GD+  +V ++            K        + P  ++  + 
Sbjct: 196 VFLEKCIVNPKHIEAQILGDSFGNVVQLFERDCSIQRRNQKL-----IEIAPSPQLTPEQ 250

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              +  L+  A +A+G       +FL      +V+++E+N 
Sbjct: 251 RAYIGDLSVRAAKAVGYENAGTVEFLL--AEGEVYFMEMNT 289


>gi|281357541|ref|ZP_06244029.1| acetyl-CoA carboxylase, biotin carboxylase [Victivallis vadensis
           ATCC BAA-548]
 gi|281316144|gb|EFB00170.1| acetyl-CoA carboxylase, biotin carboxylase [Victivallis vadensis
           ATCC BAA-548]
          Length = 455

 Score = 74.0 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 76/220 (34%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+           I +      A     DK  +++ +   GVP  P    
Sbjct: 77  AIHPGYGFLSENAYFAEACRKHGITFIGPTPEAMRALGDKAVARETMKKAGVPTTPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGDQ 165
            +      +   H +  P +IK + GG   G+ +   D S+         ++ +      
Sbjct: 137 IVGSEAEALKIAHELKYPVIIKAVAGGGGRGMRIAHNDASLVQGYHAAKTEAENAFGNGA 196

Query: 166 LLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           L +E++ V+   +   ++ D   +V  +            K    +     PA +   + 
Sbjct: 197 LYMEKFLVNPRHIEVQILADNYGNVIHLGERDCSVQRRNQKLIEESP---SPA-LSPRLR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +   A  A +A G       +FLF       +++E+N 
Sbjct: 253 ERIGAAAVKAAKAAGYTSAGTIEFLFTE-DGNFYFMEMNT 291


>gi|163815132|ref|ZP_02206513.1| hypothetical protein COPEUT_01288 [Coprococcus eutactus ATCC 27759]
 gi|158449541|gb|EDP26536.1| hypothetical protein COPEUT_01288 [Coprococcus eutactus ATCC 27759]
          Length = 1068

 Score = 74.0 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 31/230 (13%), Positives = 88/230 (38%), Gaps = 20/230 (8%)

Query: 70  AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC--PSILVNRFTMDSQHLISPP 127
           A++E+  +P   +       + D+    +++  C +P     ++      +++ + +  P
Sbjct: 649 ALMEM-GVPILGTSAENVDAAEDRELFDEILEKCCIPRPAGKTVFTREQALEAANELGYP 707

Query: 128 YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS- 186
            +++P       G+ +   D+ I   +   +       +L+++Y+ G E+    + D   
Sbjct: 708 VLVRPSYVLGGQGMQIAISDKDIIEFMDIINRHTQEHPILVDKYIMGKEVEVDAVCDGDD 767

Query: 187 --LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGI 243
             +      V ++  +S        +S  V PA+ +     + +         ++   G+
Sbjct: 768 ILIPGIMEHVERAGIHS-------GDSISVYPAQTLSPKTKRVIADYTKKLANSLHVIGL 820

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
               F+    + +V+ +E+N +   T     P ++   G    +L   ++
Sbjct: 821 INIQFI--AYNDEVYVIEVNPRSSRT----VPYISKVTGIPIVDLATRVI 864



 Score = 58.2 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 42/245 (17%), Positives = 89/245 (36%), Gaps = 12/245 (4%)

Query: 27  EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHS 82
           +    +   +DV   V  ++   KPD     L G    +  ++      L   ++    +
Sbjct: 62  DKVYIEPLTVDV---VKAIIEKEKPDSLLPTLGGQAALNIAMELDESGFLREHDVLLIGT 118

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLG 140
                  + D++  K+ +     PV PS +V   +  ++    I  P V++P       G
Sbjct: 119 SSTTIKKAEDRLEFKKTMEKIHEPVAPSEVVTTVQGGLNFVKKIGYPVVLRPAYTLGGSG 178

Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDF 199
             +   ++     L+     +   Q+L+E+ + G  E+   VM DA+   T I V   + 
Sbjct: 179 GGIANNEEEFKEILMNGLRLSRVGQVLVERCIAGWKEIEYEVMRDANG--TCITVCNMEN 236

Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
                 ++  +        +    Y+ ++  A      +  +G     F  +P S +   
Sbjct: 237 LDPVGVHTGDSIVVAPSQTLGDKEYQMLRSSALNIISELNIKGGCNVQFALNPNSFEYCV 296

Query: 260 LEINV 264
           +E+N 
Sbjct: 297 IEVNP 301


>gi|111219794|ref|YP_710588.1| putative carboxylase [Frankia alni ACN14a]
 gi|111147326|emb|CAJ58976.1| putative carboxylase [Frankia alni ACN14a]
          Length = 473

 Score = 74.0 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 71/222 (31%), Gaps = 43/222 (19%)

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQHLISPPYVIKP 132
           L +P+T   +L  A   DK R +   +  G+P        R    +     I  P V+KP
Sbjct: 98  LGLPFTPGDVLERAR--DKSRMRAAFAEHGLPTVRFGTAGRLDEALAIAADIGYPVVLKP 155

Query: 133 LKGGSSLGIIVIKKDQSIPLDLL-----------------QSSSWNHGDQLLIEQYVDGI 175
           L  G SL +  +     +                       +       +LL+EQ + G 
Sbjct: 156 LLAGGSLFVWTVHDPAELAAAFDDVLRGGAQVVAGDPLVHATFRGGAAPRLLVEQLIGGR 215

Query: 176 ELTCGVMGDASLDVTEIAV------PKSDFYSYELKYSSLNSTHVL------PAKIPLDI 223
                 +    L V E++V       +    ++  K    +           P+++P ++
Sbjct: 216 RWFASSLD---LPVGEVSVEGSVVGGEVRVLAHHDKPLPADGPFFEEVLWSSPSRLPAEL 272

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFL---FDPLSRKVFWLEI 262
              V  +A  A +A+G R                     LE+
Sbjct: 273 LARVDDVAAGAVRALGLRDC----VFHAEMRTTDTGPVLLEV 310


>gi|76788218|ref|YP_329753.1| carbamoyl phosphate synthase large subunit [Streptococcus
           agalactiae A909]
 gi|123601807|sp|Q3K150|CARB_STRA1 RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|76563275|gb|ABA45859.1| carbamoyl-phosphate synthase, large subunit [Streptococcus
           agalactiae A909]
          Length = 1060

 Score = 74.0 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 29/214 (13%), Positives = 77/214 (35%), Gaps = 14/214 (6%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           L    +    + +     + ++ + +  + +  +P  P          +++   I  P +
Sbjct: 646 LNKAGVKILGTQLEDLDRAENRKQFEATLQALNIPQPPGFTATTEEEAVNAAQKIGYPVL 705

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           ++P        + +++ ++ +   +  +   +    +LI+ Y+ G E     + D     
Sbjct: 706 VRPSYVLGGRAMKIVENEEDLRHYMTTAVKASPDHPVLIDAYLIGKECEVDAISDGQ--- 762

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
             I +P    +       S +S  V P + +   I + +          + C G+    F
Sbjct: 763 -NILIPGIMEHIERAGVHSGDSMAVYPPQTLSETIIETIVDYTKRLAIGLNCIGMMNIQF 821

Query: 249 LFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277
           +     +KV+ +E+N       P ++ V+  P  
Sbjct: 822 VI--KDQKVYVIEVNPRASRTLPFLSKVTHIPMA 853



 Score = 72.8 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 58/315 (18%), Positives = 119/315 (37%), Gaps = 39/315 (12%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQID-------VDRSVGL--------------V 45
           G ++E + S   G     +L++ G++V  ++        D+ +                +
Sbjct: 21  GQAAEFDYS---GTQACLSLKEEGYQVVLVNSNPATIMTDKDIADKVYIEPITLEFVTRI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           L   +PD     L G  G +  +      ILE L +    + + A   + D+   KQ++ 
Sbjct: 78  LRKERPDALLPTLGGQTGLNMAMALSKNGILEELNVELLGTKLSAIDKAEDRDLFKQLME 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
               P+  S +VN     +     I  P +++P       G  +    + +     +   
Sbjct: 138 ELNQPIPESEIVNSVEEAIQFAEQIGYPLIVRPAFTLGGTGGGMCDNQEQLVDITTKGLK 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   Q LIE+ + G  E+   VM DA+ +   + V   + +   +   + +S    PA+
Sbjct: 198 LSPVTQCLIERSIAGFKEIEYEVMRDAADNA--LVVCNMENFD-PVGIHTGDSIVFAPAQ 254

Query: 219 IPLDIYKE-VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
              D+  + ++  +    +A+   G        DP S K + +E+N  P ++  S     
Sbjct: 255 TLSDVENQLLRDASLDIIRALKIEGGCNVQLALDPNSFKYYVIEVN--PRVSRSS--ALA 310

Query: 278 AAYAGYSFRELLLWM 292
           +   GY   +L   +
Sbjct: 311 SKATGYPIAKLAAKI 325


>gi|254557332|ref|YP_003063749.1| carbamoyl phosphate synthase large subunit [Lactobacillus plantarum
           JDM1]
 gi|1514603|emb|CAA91005.1| carbamoyl-phosphate synthase [Lactobacillus plantarum]
 gi|254046259|gb|ACT63052.1| carbamoyl phosphate synthase large subunit [Lactobacillus plantarum
           JDM1]
          Length = 1058

 Score = 74.0 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 49/286 (17%), Positives = 103/286 (36%), Gaps = 33/286 (11%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQID-------VDRSVG--------------LV 45
           G ++E + S   G     AL++  ++V  ++        D+ +                +
Sbjct: 21  GQAAEFDYS---GTQACLALKELDYEVVLVNSNPATIMTDKEIADQVYLEPITLEFVSQI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           L    PD     L G  G +  ++     IL+ L I    + + A   + D+ + K ++ 
Sbjct: 78  LRKEHPDAILPTLGGQQGLNMAMELSKSGILDELHIELLGTKLSAIDQAEDREQFKALME 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G PV  S +       +        P +++P       G  + +  Q +        +
Sbjct: 138 ELGEPVPASGIARTVDEALAFAEQAGYPVIVRPAFTMGGTGGGIAETPQQLHDITENGLA 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   Q+LIEQ + G  E+   VM DA+ +   + V   + +     ++  +  +     
Sbjct: 198 LSPVTQVLIEQSIAGYKEIEFEVMRDAADNA--MVVCNMENFDPVGIHTGDSIVYAPVQT 255

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +     + ++  A    +A+   G        DP S   + +E+N 
Sbjct: 256 LADREVQLLRDAALKIIRALKIEGGCNVQLALDPNSFNYYIIEVNP 301



 Score = 69.8 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 24/192 (12%), Positives = 66/192 (34%), Gaps = 9/192 (4%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQHLISPPYVIKPL 133
            I    + +     + D+    +V+ +  +P       +     +     +  P +++P 
Sbjct: 650 GIKILGTSVADVNRAEDRDEFDKVIKALAIPQPAGDTASDEATALAIADKLGYPVLVRPS 709

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
                  + ++KK   +   +  +   +H   +L++ Y+ G E     + D    +    
Sbjct: 710 YVLGGRAMEIVKKRTDLDYYMHNAVKVSHDHPVLVDSYLVGKECEVDAICDGQTVLIPGI 769

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
           +   +           +S  V P + +   +  ++         A+ C G+    F+   
Sbjct: 770 MEHIERAGVHS----GDSMAVYPPQSLSAAVQAQIVDYTEKLAIALNCVGMMNIQFVIH- 824

Query: 253 LSRKVFWLEINV 264
              +V+ +E+N 
Sbjct: 825 -DDQVYVIEVNP 835


>gi|304414171|ref|ZP_07395539.1| biotin carboxylase [Candidatus Regiella insecticola LSR1]
 gi|304283385|gb|EFL91781.1| biotin carboxylase [Candidatus Regiella insecticola LSR1]
          Length = 463

 Score = 74.0 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 77/222 (34%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         L  DK+ +   +   GVP  P    
Sbjct: 97  AIHPGYGFLSENADFAEQVEHSGFIFIGPTAETIRLMGDKVSAINAMKKAGVPCVPGSDG 156

Query: 112 ---LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGD 164
                 +        I  P +IK   GG   G+ V+   + +   +     ++ +  + D
Sbjct: 157 SLGNDAKKNQAVAKKIGYPVLIKASGGGGGRGMRVVHDAKDLEKAIDMTRTEAKAAFNND 216

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+Y++    +   ++ D   +   +A           K          PA  +  D
Sbjct: 217 TVYMEKYLENPRHIEIQILADGKGNALYLAERDCSMQRRHQK-----VVEEAPAPGLSND 271

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           I   +      A   IG RG    +FL+   + + +++E+N 
Sbjct: 272 IRSNIGECCVKACIDIGYRGAGTFEFLY--ENGEFYFIEMNT 311


>gi|218296632|ref|ZP_03497350.1| acetyl-CoA carboxylase, biotin carboxylase [Thermus aquaticus
           Y51MC23]
 gi|218242945|gb|EED09478.1| acetyl-CoA carboxylase, biotin carboxylase [Thermus aquaticus
           Y51MC23]
          Length = 445

 Score = 74.0 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 35/219 (15%), Positives = 78/219 (35%), Gaps = 18/219 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+     +     I +            DK  +++V    GVP  P    
Sbjct: 76  AIHPGYGFLAENATFAEMCREHGITFIGPTPENMRALGDKATARKVAREAGVPTVPGTDE 135

Query: 114 NRFTMDSQHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQL 166
                +++     I  P ++K   GG   G+ V+  ++ +   +L    ++ +      +
Sbjct: 136 VESVEEAKRAALEIGYPVILKASAGGGGRGMRVVHTEEDLERAVLQAQEEARAAFGNPAV 195

Query: 167 LIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
            +E+Y++    +   V+GD         V         ++          P+ +PL+  +
Sbjct: 196 YLEKYIEEPKHIEIQVLGDGE------RVVHLWERDCSIQRRHQKLLEEAPSILPLETRR 249

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +   A    + +G       +FL D      +++E+N 
Sbjct: 250 AIAEAARRLAEHVGYVSAGTLEFLVDKEGN-FYFIEMNT 287


>gi|74316199|ref|YP_313939.1| acetyl-CoA carboxylase biotin carboxylase subunit [Thiobacillus
           denitrificans ATCC 25259]
 gi|74055694|gb|AAZ96134.1| acetyl-CoA carboxylase, biotin carboxylase [Thiobacillus
           denitrificans ATCC 25259]
          Length = 449

 Score = 74.0 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 32/220 (14%), Positives = 77/220 (35%), Gaps = 19/220 (8%)

Query: 58  LHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS---- 110
           +H  +G   E+      +E     +         L  DK+ +KQ +    VP  P     
Sbjct: 78  IHPGYGFLSENADFAERVESSGFTFIGPRPDNIRLMGDKVAAKQAMIDAKVPCVPGSDGA 137

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGDQ 165
                +  + +   I  P +IK   GG   G+ V+  + ++   +     ++ +      
Sbjct: 138 LADDPQEILKTARAIGYPVIIKAAGGGGGRGMRVVHTEAALLNAVTMTKTEAGAAFGNPM 197

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E++++    +   ++ D   +   +            K             +   + 
Sbjct: 198 VYMEKFLETPRHIEIQILADEHGNAVHLGERDCSMQRRHQKVL----EEAPAPGLDPKLR 253

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            ++      A + IG RG    +FL+   + + +++E+N 
Sbjct: 254 DKIGERCAEACRKIGYRGAGTFEFLY--ENGEFYFIEMNT 291


>gi|116207076|ref|XP_001229347.1| hypothetical protein CHGG_02831 [Chaetomium globosum CBS 148.51]
 gi|88183428|gb|EAQ90896.1| hypothetical protein CHGG_02831 [Chaetomium globosum CBS 148.51]
          Length = 1170

 Score = 74.0 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 55/289 (19%), Positives = 107/289 (37%), Gaps = 37/289 (12%)

Query: 4   LMGGISSEREVSLSSGKACASALEDAGF--------------------KVSQIDVDRS-V 42
           L  G + E + S   G     AL++AG                     +V  + V    V
Sbjct: 104 LAIGQAGEFDYS---GSQALKALKEAGVASVLINPNIATIQTNHTLADEVYYLPVTPEYV 160

Query: 43  GLVLAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQ 98
             V+   KPD  F    G    +  VQ     + E   +    + +    LS D+    +
Sbjct: 161 EYVIQKEKPDGIFLSFGGQTALNLGVQMQKLGLFEKYGVRVLGTSVRTLELSEDRDLFAK 220

Query: 99  VVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
            +    +P+  SI VN     +++ + I  P +++       LG      ++ +    + 
Sbjct: 221 ALDEINIPIAKSIAVNTVDEALEAANKIGYPIIVRAAYALGGLGSGFANNEEELR--NMA 278

Query: 157 SSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215
           + S     Q+L+E+ + G  E+   V+ DA+ +   I V   + +   L   + +S  V 
Sbjct: 279 ARSLTLSPQILVEKSLKGWKEVEYEVVRDANNN--CITVCNMENFD-PLGIHTGDSIVVA 335

Query: 216 PAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
           P++ +  + Y  ++  A    + +G  G     +   P       +E+N
Sbjct: 336 PSQTLSDEEYHMLRSAAIKIVRHLGVVGECNVQYALQPDGLDYRVIEVN 384



 Score = 62.1 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 66/173 (38%), Gaps = 6/173 (3%)

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVI 130
           E        +       + D+ +  +++ S GV       +   +   +    +S P ++
Sbjct: 732 EAGGAKVLGTDPRNIDKAEDRQKFSEILDSIGVDQPAWKELTSVKAAEEFADQVSYPVLV 791

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190
           +P    S   + VI+    +   L  +S+ +    ++I ++++G E    +  D      
Sbjct: 792 RPSYVLSGAAMTVIRSKDELKDKLEAASNVSPDHPVVISKFIEGAEE---IDLDGVASEG 848

Query: 191 EIAVPKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            + V     +  +    S ++T V  PAK+     + V+ +A    QA+   G
Sbjct: 849 NLIVHAVSEHVEQAGVHSGDATLVLPPAKLDESTMQRVKEIAQKIAQALQITG 901


>gi|332876748|ref|ZP_08444506.1| phosphoribosylglycinamide formyltransferase 2 [Capnocytophaga sp.
           oral taxon 329 str. F0087]
 gi|332685307|gb|EGJ58146.1| phosphoribosylglycinamide formyltransferase 2 [Capnocytophaga sp.
           oral taxon 329 str. F0087]
          Length = 389

 Score = 73.6 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 38/236 (16%), Positives = 80/236 (33%), Gaps = 25/236 (10%)

Query: 33  VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
              +D D ++  V+   KPD+    +     E        +L +       ++ SA +++
Sbjct: 49  FHMLDGD-ALMAVVEKHKPDIIVPEIEAIRTE--------KLYDCEKMGIQVVPSARAVN 99

Query: 93  -----KMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVIK 145
                K   +   +  G+          F     +  +I  P +IKPL   S  G   + 
Sbjct: 100 FTMNRKEIRELAHTELGLKTADYRYAKTFDELKAAADVIGFPCIIKPLMSSSGHGQSKVD 159

Query: 146 KDQSIPLDLLQSSSWNHGD--QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSY 202
               +      + +   GD  ++++EQ++    E+T   +   +                
Sbjct: 160 SPADLAHAWEYACAGARGDVKEVIVEQFIPFDSEITLLTVTQQNGPTLFCQPIG------ 213

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
            ++          PA I  ++ K+ Q +A    +A+   GI   +F        +F
Sbjct: 214 HVQKGGDYRESFQPAAISPEMLKDAQDMAEKITRALTGAGIWGVEFFLSHKDGVIF 269


>gi|291278872|ref|YP_003495707.1| acetyl-CoA carboxylase biotin carboxylase subunit [Deferribacter
           desulfuricans SSM1]
 gi|290753574|dbj|BAI79951.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Deferribacter
           desulfuricans SSM1]
          Length = 445

 Score = 73.6 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 33/215 (15%), Positives = 70/215 (32%), Gaps = 14/215 (6%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVN 114
           +G   E+     I E     +         L  +K ++K+ +   GVPV P     +   
Sbjct: 82  YGFLAENADFAKICEDCGFKFIGPKSEHIELMGNKAKAKETMKKYGVPVVPGSEGAVADP 141

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD----QSIPLDLLQSSSWNHGDQLLIEQ 170
              +     I  P +IK   GG   G+ V   +            +S        + IE+
Sbjct: 142 DEALKIAKEIGFPVIIKASAGGGGKGMRVAHNEMSFLTQFETAKNESEKAFGCGDVYIEK 201

Query: 171 YVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           Y++    +   V GD+  +       +        K             +   +  ++  
Sbjct: 202 YIESPRHIEIQVFGDSKGNAVHFFERECSIQRRHQK----LIEEAPSPFLTERMRYKMGE 257

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           ++  A + +G       +++ D      +++E+N 
Sbjct: 258 ISVNAVKNLGYENAGTIEYIVDSSGN-FYFMEMNT 291


>gi|330444595|ref|YP_004377581.1| acetyl-CoA carboxylase, biotin carboxylase [Chlamydophila pecorum
           E58]
 gi|328807705|gb|AEB41878.1| acetyl-CoA carboxylase, biotin carboxylase [Chlamydophila pecorum
           E58]
          Length = 451

 Score = 73.6 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 81/220 (36%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+    +I E   + +      + A   DK+ +K +      PV P    
Sbjct: 76  AVHPGYGFLSENSSFASICESCGLTFIGPSAESIATMGDKVAAKLLAKKIKCPVIPGSEG 135

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQ----SIPLDLLQSSSWNHGDQ 165
            +            I  P VIK + GG   GI ++K+      +      ++ +  +   
Sbjct: 136 IVQSESEGFKIAEQIGFPIVIKAVAGGGGRGIRIVKEKDMFYRAFAAARTEAEAGFNNPD 195

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE++++    L   V+GD   +   +            K             +  +I 
Sbjct: 196 VYIEKFIENPRHLEVQVIGDKHGNYVHLGERDCTVQRRRQK----LIEETPSPILSPEIR 251

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +V ++A    ++ G   +   +FL D   +K +++E+N 
Sbjct: 252 AKVGKVAVDLARSAGYFSVGTVEFLLDK-DKKFYFMEMNT 290


>gi|212211769|ref|YP_002302705.1| biotin carboxylase [Coxiella burnetii CbuG_Q212]
 gi|212010179|gb|ACJ17560.1| biotin carboxylase [Coxiella burnetii CbuG_Q212]
          Length = 448

 Score = 73.6 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 36/222 (16%), Positives = 79/222 (35%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---S 110
            +H  +G   E+      +E     +      A  L  +K+ + + +   G+P  P    
Sbjct: 77  AIHPGYGFLAENPNFCEQVEKSGFVFIGPSHEAIHLMGNKVSAIKAMKEAGLPCIPGSDG 136

Query: 111 ILVNRFTMD--SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGD 164
            L      +      I  P +IK   GG   G+ V+ ++  +   +     ++++    D
Sbjct: 137 ALGKDGDANLLIAERIGYPVLIKAAGGGGGRGMRVVHREAELLNAIAMTRTEAAAAFGTD 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
           ++ +E++++    +   V+GD       +            K          PA  I   
Sbjct: 197 EVYMEKFLENPRHIEIQVLGDGQGHAIHLGERDCSMQRRHQK-----VIEEAPAPGITPK 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
               +      A  A+  RG    +FL+   + + +++E+N 
Sbjct: 252 QRATIGERCVQACIAMNYRGAGTFEFLY--ENGEFYFIEMNT 291


>gi|167854854|ref|ZP_02477631.1| Biotin carboxylase [Haemophilus parasuis 29755]
 gi|167854033|gb|EDS25270.1| Biotin carboxylase [Haemophilus parasuis 29755]
          Length = 447

 Score = 73.6 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 40/225 (17%), Positives = 83/225 (36%), Gaps = 27/225 (12%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+      +E     +         L  DK+ +   +   GVP  P    
Sbjct: 77  AIHPGYGFLSENANFAEQVENSGFIFIGPTADVIRLMGDKVSAINAMKKAGVPCVPGSGG 136

Query: 111 -----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWN 161
                +  N+   +    I  P +IK   GG   G+ V+  ++ +   +     ++ +  
Sbjct: 137 PIGNDVAKNK---EIAQKIGYPVIIKASGGGGGRGMRVVHHEKDLEESIAMTKAEAKAAF 193

Query: 162 HGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-I 219
           + D + +E+Y++    +   V+ D   +   +A           K          PA  I
Sbjct: 194 NNDMVYMEKYLENPRHIEIQVLADTHGNAVYLAERDCSMQRRHQK-----VVEEAPAPGI 248

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             ++ + +      A + IG RG    +FLF   + + +++E+N 
Sbjct: 249 TPELRQFIGERCANACREIGYRGAGTFEFLF--ENGEFYFIEMNT 291


>gi|308181401|ref|YP_003925529.1| carbamoyl-phosphate synthase (glutamine-hydrolyzing), large subunit
           [Lactobacillus plantarum subsp. plantarum ST-III]
 gi|308046892|gb|ADN99435.1| carbamoyl-phosphate synthase (glutamine-hydrolyzing), large subunit
           [Lactobacillus plantarum subsp. plantarum ST-III]
          Length = 1058

 Score = 73.6 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 49/286 (17%), Positives = 103/286 (36%), Gaps = 33/286 (11%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQID-------VDRSVG--------------LV 45
           G ++E + S   G     AL++  ++V  ++        D+ +                +
Sbjct: 21  GQAAEFDYS---GTQACLALKELDYEVVLVNSNPATIMTDKEIADQVYLEPITLEFVSQI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           L    PD     L G  G +  ++     IL+ L I    + + A   + D+ + K ++ 
Sbjct: 78  LRKEHPDAILPTLGGQQGLNMAMELSKSGILDELHIELLGTKLSAIDQAEDREQFKALME 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G PV  S +       +        P +++P       G  + +  Q +        +
Sbjct: 138 ELGEPVPASGIARTVDEALAFAEQAGYPVIVRPAFTMGGTGGGIAETPQQLHDITENGLA 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   Q+LIEQ + G  E+   VM DA+ +   + V   + +     ++  +  +     
Sbjct: 198 LSPVTQVLIEQSIAGYKEIEFEVMRDAADNA--MVVCNMENFDPVGIHTGDSIVYAPVQT 255

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +     + ++  A    +A+   G        DP S   + +E+N 
Sbjct: 256 LADREVQLLRDAALKIIRALKIEGGCNVQLALDPNSFNYYIIEVNP 301



 Score = 69.8 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 24/192 (12%), Positives = 66/192 (34%), Gaps = 9/192 (4%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQHLISPPYVIKPL 133
            I    + +     + D+    +V+ +  +P       +     +     +  P +++P 
Sbjct: 650 GIKILGTSVADVNRAEDRDEFDKVIKALAIPQPAGDTASDEATALAIADKLGYPVLVRPS 709

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
                  + ++KK   +   +  +   +H   +L++ Y+ G E     + D    +    
Sbjct: 710 YVLGGRAMEIVKKRTDLDYYMHNAVKVSHDHPVLVDSYLVGKECEVDAICDGQTVLIPGI 769

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
           +   +           +S  V P + +   +  ++         A+ C G+    F+   
Sbjct: 770 MEHIERAGVHS----GDSMAVYPPQSLSAAVQAQIVDYTEKLAIALNCVGMMNIQFVIH- 824

Query: 253 LSRKVFWLEINV 264
              +V+ +E+N 
Sbjct: 825 -DDQVYVIEVNP 835


>gi|162453191|ref|YP_001615558.1| Urea amidolyase-related protein [Sorangium cellulosum 'So ce 56']
 gi|161163773|emb|CAN95078.1| Urea amidolyase-related protein [Sorangium cellulosum 'So ce 56']
          Length = 1218

 Score = 73.6 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 35/201 (17%), Positives = 70/201 (34%), Gaps = 14/201 (6%)

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---ISPPYV 129
           E   I +             K R++++    GVP+ P   V R    +      I  P +
Sbjct: 102 ENAGIVFIGPTPGQMEAFGSKHRARELAVEAGVPLLPGTGVLRDADHAAAEAAAIGYPVL 161

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQLLIEQYVDG-IELTCGVMGD 184
           +K   GG  +G+        +P    +            ++ +E+++     +   + GD
Sbjct: 162 LKASAGGGGIGMARCDGPAELPAAFERVQRLARSNFGSGEVFLERFLAAPRHVEVQIAGD 221

Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL-AHQAIGCRGI 243
               V  +            K         LP ++   + +  + LA   A++ +G    
Sbjct: 222 GRGSVLVLGDRDCSVQRRNQKVLEEAPAPDLPPRLRSALAESARALAAKVAYRNVGT--- 278

Query: 244 SRSDFLFDPLSRKVFWLEINV 264
              +FL DP   + ++LE+N 
Sbjct: 279 --VEFLVDPARAEHYFLEVNT 297


>gi|134099939|ref|YP_001105600.1| acetyl/propionyl-CoA carboxylase alpha subunit [Saccharopolyspora
           erythraea NRRL 2338]
 gi|133912562|emb|CAM02675.1| acetyl/propionyl-CoA carboxylase alpha subunit [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 547

 Score = 73.6 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 73/221 (33%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLV-QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            +H  +G   E+    QA+L+   + +      A  +  DK+ ++++    G P+ P   
Sbjct: 41  AVHPGYGFLSENADFAQAVLD-AGLVWVGPSPEAIRVLGDKVTARRIALEVGAPLVPGTE 99

Query: 113 VNRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSWNHGD 164
                 D           P  IK   GG   G+ V +  + IP      + ++ +     
Sbjct: 100 EPASGADEVVAFAEEHGLPVAIKAAFGGGGRGLKVARSLEEIPGLFESAVREAEAAFGRG 159

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           +  +E+Y+D    +   V+ D    V  +            K             +  + 
Sbjct: 160 ECFVERYLDRPRHVEAQVLADRHGGVVVVGTRDCSLQRRHQK----LVEEAPAPFLSEEQ 215

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +   A       G  G    +FL       + +LE+N 
Sbjct: 216 RERIHTAAREICARAGYAGAGTVEFLV-GADGTISFLEVNT 255


>gi|313904323|ref|ZP_07837701.1| carbamoyl-phosphate synthase, large subunit [Eubacterium
           cellulosolvens 6]
 gi|313470873|gb|EFR66197.1| carbamoyl-phosphate synthase, large subunit [Eubacterium
           cellulosolvens 6]
          Length = 1072

 Score = 73.6 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 38/229 (16%), Positives = 86/229 (37%), Gaps = 18/229 (7%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYV 129
           L  + +P   +       + D+    Q++    +P      V          + +  P +
Sbjct: 648 LMKMGVPILGTSAEDVDAAEDRELFDQILRKTEIPRAAGRTVFTAEEGVKVANELGYPVL 707

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           ++P       G+ +   D+ I   +   + +     +L+++Y++G E+    + D     
Sbjct: 708 VRPSYVLGGQGMQIAINDEDITKYINVINRYTQDHPILVDKYLEGTEIEVDAVCDGE--- 764

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
            +I +P    +       S +S  V PA  +  +I K+++        A+   G+    F
Sbjct: 765 -DILIPGIMQHIERAGIHSGDSISVYPAKDLTDEIKKKIEIDTKKLANALHVLGMINIQF 823

Query: 249 LFDPLSRKVFWLEIN-----VQPGM---TPVSIFPEMAA-YAGYSFREL 288
           +      +V+ +E+N       P +   T + I P  A    G+  ++L
Sbjct: 824 IVYK--DEVYVIEVNPRSSRTVPYISKVTGIPIVPLAAQCIMGHKIKDL 870



 Score = 65.1 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 49/286 (17%), Positives = 98/286 (34%), Gaps = 33/286 (11%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI---------DVD------------RSVGLV 45
           G ++E + +   G  C  +L++ G +V  +         D D              V  +
Sbjct: 21  GQAAEFDYA---GTQCCRSLKEEGIEVVLLNSNPATIMTDGDIADRVYIEPLTVEVVQQL 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   KPD     + G  G +  ++      L    +    +  L    + D+   K  + 
Sbjct: 78  IIKEKPDSILPTMGGQAGLNLAMELDDNGFLAEHNVRLIGTTALTIKKAEDRQMFKDTME 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G PV  S +V+           I  P V++P       G  +    + +   L     
Sbjct: 138 KIGEPVAASEVVHSIEHGQRFAEKIGYPVVLRPAYTLGGSGGGIAHNQEELVEILSNGLR 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   ++L+E+Y+ G  E+   VM D + +V  I V   +       ++  +        
Sbjct: 198 LSRVHEVLVERYIGGWKEIEYEVMRDGAGNV--ITVCNMENLDPVGVHTGDSIVVAPSQT 255

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +    Y+ ++  A      +G  G     +   P S +   +E+N 
Sbjct: 256 LGDKEYQMLRTSALNIITELGITGGCNVQYALKPDSFEYCVIEVNP 301


>gi|257884793|ref|ZP_05664446.1| phosphoribosylaminoimidazole carboxylase [Enterococcus faecium
           1,231,501]
 gi|257820631|gb|EEV47779.1| phosphoribosylaminoimidazole carboxylase [Enterococcus faecium
           1,231,501]
          Length = 374

 Score = 73.6 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 37/207 (17%), Positives = 85/207 (41%), Gaps = 15/207 (7%)

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTMDSQ 121
           E+  V+A+  +L + +   G    A++ D++  K  + +  + + P   +       D+ 
Sbjct: 78  ENVSVEALNAILPMSFIPQGTDLLAITQDRLLEKSFLETNNIVIAPYATIVSPTDIQDAI 137

Query: 122 HLISPPYVIKPLKGG-SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTC 179
             I  P V+K  +GG    G  V+K    +   +            ++E ++    E++ 
Sbjct: 138 DGIGYPCVLKTTRGGYDGKGQYVLKSRADLAPAMDL----LREGTCVLEAWIPFEKEISI 193

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
            V G+   D T   V ++        ++++    + PA I  D+ +E +R+A +  +A+ 
Sbjct: 194 MVAGNGQGDFTTFPVVENIH------HNNILHETIAPAAIDQDVIEEAERIARVIAEAVS 247

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQP 266
             G+   +         ++  E+  +P
Sbjct: 248 LSGVLGVEMFLTKTGG-LYVNELAPRP 273


>gi|256964979|ref|ZP_05569150.1| carbamoyl-phosphate synthase [Enterococcus faecalis HIP11704]
 gi|256955475|gb|EEU72107.1| carbamoyl-phosphate synthase [Enterococcus faecalis HIP11704]
          Length = 1060

 Score = 73.6 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 50/296 (16%), Positives = 107/296 (36%), Gaps = 34/296 (11%)

Query: 25  ALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNVLHGNFG 63
           AL++ G++V  ++        D+ +                +L   +PD     L G  G
Sbjct: 36  ALKEEGYEVVLVNSNPATIMTDKEIADHVYIEPITLEFVSRILRKERPDALLPTLGGQTG 95

Query: 64  EDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFT 117
            +  ++     IL+ L +    + + A   + D+   KQ++     P+  S +VN     
Sbjct: 96  LNMAMELSESGILDELNVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIVNTVEQA 155

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IE 176
           +     I  P +++P       G  +   ++ +          +   Q LIE+ + G  E
Sbjct: 156 VAFAKRIGYPIIVRPAFTLGGTGGGMCDTEEELRQIAENGLKLSPVTQCLIEKSIAGFKE 215

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +   VM D+  +   I V   + +     ++  +        +    Y+ ++  +    +
Sbjct: 216 IEYEVMRDSVDNA--IVVCNMENFDPVGIHTGDSIVFAPSQTLSDYEYQMLRDASLKIIR 273

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           A+   G        DP S   + +E+N  P ++  S     +   GY   +L   +
Sbjct: 274 ALKIEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAKI 325



 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/221 (11%), Positives = 71/221 (32%), Gaps = 13/221 (5%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--QHLISPPYVIKPL 133
            +    + I     + ++   +Q +    +P  P                I  P +++P 
Sbjct: 650 GVKILGTTIEDLDRAENRDLFEQALQELAIPQPPGDTATSAEEAVVIADRIGYPVLVRPS 709

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
                  + +++  + +   +  +   +    +L++ Y+ G E     + D    +    
Sbjct: 710 YVLGGRAMEIVENQKDLEDYMRHAVKASPEHPVLVDSYLLGQECEVDAICDGETVLIPGI 769

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
           +   +           +S  V P + +  +I   +          + C G+    F+   
Sbjct: 770 MEHIERAGVHS----GDSMAVYPPQYLSQEIQATIADYTKKLALGLNCVGMMNIQFVIHE 825

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
              +V+ +E+N +   T     P ++   G    ++    +
Sbjct: 826 --NRVYVIEVNPRASRT----VPFLSKITGIPMAQVATKAI 860


>gi|300768577|ref|ZP_07078476.1| carbamoyl-phosphate synthase (glutamine-hydrolyzing), large subunit
           [Lactobacillus plantarum subsp. plantarum ATCC 14917]
 gi|300493884|gb|EFK29053.1| carbamoyl-phosphate synthase (glutamine-hydrolyzing), large subunit
           [Lactobacillus plantarum subsp. plantarum ATCC 14917]
          Length = 1058

 Score = 73.6 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 49/286 (17%), Positives = 103/286 (36%), Gaps = 33/286 (11%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQID-------VDRSVG--------------LV 45
           G ++E + S   G     AL++  ++V  ++        D+ +                +
Sbjct: 21  GQAAEFDYS---GTQACLALKELDYEVVLVNSNPATIMTDKEIADQVYLEPITLEFVSQI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           L    PD     L G  G +  ++     IL+ L I    + + A   + D+ + K ++ 
Sbjct: 78  LRKEHPDAILPTLGGQQGLNMAMELSKSGILDELHIELLGTKLSAIDQAEDREQFKALME 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G PV  S +       +        P +++P       G  + +  Q +        +
Sbjct: 138 ELGEPVPASGIARTVDEALAFAEQAGYPVIVRPAFTMGGTGGGIAETPQQLHDITENGLA 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   Q+LIEQ + G  E+   VM DA+ +   + V   + +     ++  +  +     
Sbjct: 198 LSPVTQVLIEQSIAGYKEIEFEVMRDAADNA--MVVCNMENFDPVGIHTGDSIVYAPVQT 255

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +     + ++  A    +A+   G        DP S   + +E+N 
Sbjct: 256 LADREVQLLRDAALKIIRALKIEGGCNVQLALDPNSFNYYIIEVNP 301



 Score = 69.8 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 24/192 (12%), Positives = 66/192 (34%), Gaps = 9/192 (4%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQHLISPPYVIKPL 133
            I    + +     + D+    +V+ +  +P       +     +     +  P +++P 
Sbjct: 650 GIKILGTSVADVNRAEDRDEFDKVIKALAIPQPAGDTASDEATALAIADKLGYPVLVRPS 709

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
                  + ++KK   +   +  +   +H   +L++ Y+ G E     + D    +    
Sbjct: 710 YVLGGRAMEIVKKRTDLDYYMHNAVKVSHDHPVLVDSYLVGKECEVDAICDGQTVLIPGI 769

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
           +   +           +S  V P + +   +  ++         A+ C G+    F+   
Sbjct: 770 MEHIERAGVHS----GDSMAVYPPQSLSAAVQAQIVDYTEKLAIALNCVGMMNIQFVIH- 824

Query: 253 LSRKVFWLEINV 264
              +V+ +E+N 
Sbjct: 825 -DDQVYVIEVNP 835


>gi|261367606|ref|ZP_05980489.1| carbamoyl-phosphate synthase, large subunit [Subdoligranulum
           variabile DSM 15176]
 gi|282570394|gb|EFB75929.1| carbamoyl-phosphate synthase, large subunit [Subdoligranulum
           variabile DSM 15176]
          Length = 1078

 Score = 73.6 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 51/287 (17%), Positives = 100/287 (34%), Gaps = 35/287 (12%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI---------DVD------------RSVGLV 45
           G ++E + S   G     AL+  G +   +         D D              V  +
Sbjct: 21  GQAAEFDYS---GTQACRALKSEGVETVLVNSNPATIMTDPDIADHVYIEPLTAEVVERI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   KPD     L G  G +  ++      L+   +            + D+   K  + 
Sbjct: 78  IEKEKPDAILPNLGGQMGLNLSMELARNGFLDRSGVRLLACKPETIDRAEDRQLFKDTME 137

Query: 102 SCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
               P+ PS +V      +D   +I  P +++P       G  + +  + +         
Sbjct: 138 KLHQPIIPSKVVEDLDDALDFAEVIGYPVIVRPAFTMGGTGGGICEDREKLHEIATNGLR 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   Q+L+E+ + G  E+   VM D+  +V  I V   +     +   + +S  V P++
Sbjct: 198 LSPIHQILVEKCISGWKEIEYEVMRDSKGNV--ITVCNMENLD-PVGIHTGDSIVVAPSQ 254

Query: 219 -IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +    Y+ ++  A      +G  G     F   P S +   +E+N 
Sbjct: 255 TLSDKEYQMLRTAALDIITELGIEGGCNCQFALKPDSFEYAVIEVNP 301



 Score = 58.6 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/224 (13%), Positives = 80/224 (35%), Gaps = 20/224 (8%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           ++ + +P   +   A   + D+ R  +++  CG+P      V      + +   +  P +
Sbjct: 646 MDDIGLPILGTPADAIDEAEDRERFDELLERCGIPRPEGRTVYTLDEALKAAQEVGYPVL 705

Query: 130 IKPLK-GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS-- 186
           ++P    G    I+       I    + ++  +    +L+++Y+ G E     + D +  
Sbjct: 706 MRPSYVLGGQNMIVAYNSADVIEYMGVITAHVDMSHPVLMDKYIYGTECEVDAICDGTDY 765

Query: 187 -LDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGIS 244
            +      + ++  +S        +S  V P       +   +        + +   G+ 
Sbjct: 766 LVPGIMEQIERTGVHS-------GDSICVYPPYNFSQKVIDTLVDYTGRFARELKVVGL- 817

Query: 245 RSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
             +  +     KV+ +E+N +   T     P ++   G    +L
Sbjct: 818 -VNVQYAVQDGKVYVIEVNPRSSRT----VPYISKVTGVPMVDL 856


>gi|261207668|ref|ZP_05922353.1| phosphoribosylaminoimidazole carboxylase [Enterococcus faecium TC
           6]
 gi|289565786|ref|ZP_06446229.1| phosphoribosylaminoimidazole carboxylase, ATPase subunit
           [Enterococcus faecium D344SRF]
 gi|294615905|ref|ZP_06695747.1| phosphoribosylaminoimidazole carboxylase, ATPase subunit
           [Enterococcus faecium E1636]
 gi|260078051|gb|EEW65757.1| phosphoribosylaminoimidazole carboxylase [Enterococcus faecium TC
           6]
 gi|289162424|gb|EFD10281.1| phosphoribosylaminoimidazole carboxylase, ATPase subunit
           [Enterococcus faecium D344SRF]
 gi|291591291|gb|EFF22958.1| phosphoribosylaminoimidazole carboxylase, ATPase subunit
           [Enterococcus faecium E1636]
          Length = 374

 Score = 73.6 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 37/207 (17%), Positives = 85/207 (41%), Gaps = 15/207 (7%)

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTMDSQ 121
           E+  V+A+  +L + +   G    A++ D++  K  + +  + + P   +       D+ 
Sbjct: 78  ENVSVEALNAILPMSFIPQGTDLLAITQDRLLEKSFLETNNIVIAPYATIVSPTDIQDAI 137

Query: 122 HLISPPYVIKPLKGG-SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTC 179
             I  P V+K  +GG    G  V+K    +   +            ++E ++    E++ 
Sbjct: 138 DGIGYPCVLKTTRGGYDGKGQYVLKSRADLAPAMDL----LREGTCVLEAWIPFEKEISI 193

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
            V G+   D T   V ++        ++++    + PA I  D+ +E +R+A +  +A+ 
Sbjct: 194 MVAGNGQGDFTTFPVVENIH------HNNILHETIAPAAIDQDVIEEAERIARVIAEAVS 247

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQP 266
             G+   +         ++  E+  +P
Sbjct: 248 LSGVLGVEMFLTKTGG-LYVNELAPRP 273


>gi|187251588|ref|YP_001876070.1| acetyl-CoA carboxylase, biotin carboxylase [Elusimicrobium minutum
           Pei191]
 gi|186971748|gb|ACC98733.1| Acetyl-CoA carboxylase, biotin carboxylase [Elusimicrobium minutum
           Pei191]
          Length = 455

 Score = 73.6 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 37/218 (16%), Positives = 79/218 (36%), Gaps = 15/218 (6%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +    I +      A      K  ++++    GVPV P    
Sbjct: 81  AIHPGYGFLSENPKFSKAVTKAGIVFIGPTPEAIEALGVKSAAREIAIKAGVPVIPGSDG 140

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGDQLL 167
           +V +   +    I  P +IK   GG   G+  + K++ +     +   ++ +    D++ 
Sbjct: 141 IVGKNYKEIAKKIGFPIMIKATMGGGGKGMRAVMKEEDLDKMMQMAQNEARAAFGDDRVY 200

Query: 168 IEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE 226
            E+ V     +   V  DA  +V               K             +  ++ K+
Sbjct: 201 FEKLVLAPRHIEVQVAADAHGNVLSFTERDCSMQRRHQK----LVEESPSPFVTPEVRKK 256

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + + A    +A    G+   +FL D  ++  +++E+N 
Sbjct: 257 LTQAASKMIKACQYTGVGTVEFLMD-QNKDFYFMEVNT 293


>gi|114049526|emb|CAJ75872.1| PyrAb1 protein [Lactobacillus plantarum subsp. plantarum]
          Length = 1058

 Score = 73.6 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 49/286 (17%), Positives = 103/286 (36%), Gaps = 33/286 (11%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQID-------VDRSVG--------------LV 45
           G ++E + S   G     AL++  ++V  ++        D+ +                +
Sbjct: 21  GQAAEFDYS---GTQACLALKELDYEVVLVNSNPATIMTDKEIADQVYLEPITLEFVSQI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           L    PD     L G  G +  ++     IL+ L I    + + A   + D+ + K ++ 
Sbjct: 78  LRKEHPDAILPTLGGQQGLNMAMELSKSGILDELHIELLGTKLSAIDQAEDREQFKALME 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G PV  S +       +        P +++P       G  + +  Q +        +
Sbjct: 138 ELGEPVPASGIARTVDEALAFAEQAGYPVIVRPAFTMGGTGGGIAETPQQLHDITENGLA 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   Q+LIEQ + G  E+   VM DA+ +   + V   + +     ++  +  +     
Sbjct: 198 LSPVTQVLIEQSIAGYKEIEFEVMRDAADNA--MVVCNMENFDPVGIHTGDSIVYAPVQT 255

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +     + ++  A    +A+   G        DP S   + +E+N 
Sbjct: 256 LADREVQLLRDAALKIIRALKIEGGCNVQLALDPNSFNYYIIEVNP 301



 Score = 69.0 bits (168), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 24/192 (12%), Positives = 66/192 (34%), Gaps = 9/192 (4%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQHLISPPYVIKPL 133
            I    + +     + D+    +V+ +  +P       +     +     +  P +++P 
Sbjct: 650 GIKILGTSVADVNRAEDRDEFDKVIKALAIPQPAGDTASDEATALAIADKLGYPVLVRPS 709

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
                  + ++KK   +   +  +   +H   +L++ Y+ G E     + D    +    
Sbjct: 710 YVLGGRAMEIVKKRTDLDYYMHNAVKVSHDHPVLVDSYLVGKECEVDAICDGQTVLIPGI 769

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
           +   +           +S  V P + +   +  ++         A+ C G+    F+   
Sbjct: 770 MEHIERAGVHS----GDSMAVYPPQSLSAAVQAQIVDYTEKLAIALNCVGVMNIQFVIH- 824

Query: 253 LSRKVFWLEINV 264
              +V+ +E+N 
Sbjct: 825 -DDQVYVIEVNP 835


>gi|134102942|ref|YP_001108603.1| acetyl/propionyl-CoA carboxylase alpha subunit [Saccharopolyspora
           erythraea NRRL 2338]
 gi|1177649|emb|CAA63308.1| biotin carboxylase and biotin carboxyl carrier protein
           [Saccharopolyspora erythraea NRRL 2338]
 gi|133915565|emb|CAM05678.1| acetyl/propionyl-CoA carboxylase alpha subunit [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 597

 Score = 73.6 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 73/221 (33%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLV-QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            +H  +G   E+    QA+L+   + +      A  +  DK+ ++++    G P+ P   
Sbjct: 91  AVHPGYGFLSENADFAQAVLD-AGLVWVGPSPEAIRVLGDKVTARRIALEVGAPLVPGTE 149

Query: 113 VNRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSWNHGD 164
                 D           P  IK   GG   G+ V +  + IP      + ++ +     
Sbjct: 150 EPASGADEVVAFAEEHGLPVAIKAAFGGGGRGLKVARSLEEIPGLFESAVREAEAAFGRG 209

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           +  +E+Y+D    +   V+ D    V  +            K             +  + 
Sbjct: 210 ECFVERYLDRPRHVEAQVLADRHGGVVVVGTRDCSLQRRHQK----LVEEAPAPFLSEEQ 265

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +   A       G  G    +FL       + +LE+N 
Sbjct: 266 RERIHTAAREICARAGYAGAGTVEFLV-GADGTISFLEVNT 305


>gi|33593927|ref|NP_881571.1| acetyl-CoA carboxylase biotin carboxylase subunit [Bordetella
           pertussis Tohama I]
 gi|33598423|ref|NP_886066.1| acetyl-CoA carboxylase biotin carboxylase subunit [Bordetella
           parapertussis 12822]
 gi|33603363|ref|NP_890923.1| acetyl-CoA carboxylase biotin carboxylase subunit [Bordetella
           bronchiseptica RB50]
 gi|33564001|emb|CAE43267.1| biotin carboxylase [Bordetella pertussis Tohama I]
 gi|33574552|emb|CAE39199.1| biotin carboxylase [Bordetella parapertussis]
 gi|33577487|emb|CAE34752.1| biotin carboxylase [Bordetella bronchiseptica RB50]
 gi|332383346|gb|AEE68193.1| acetyl-CoA carboxylase biotin carboxylase subunit [Bordetella
           pertussis CS]
          Length = 448

 Score = 73.6 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 35/222 (15%), Positives = 82/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +            DK+ +K+ +   GVPV P    
Sbjct: 77  AIHPGYGFLAENADFAERVEKSGFVFIGPRPETIRQMGDKVSAKRAMIEAGVPVVPGSEG 136

Query: 112 LVNRFTMD---SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
            +     +       +  P +IK   GG   G+ V+  + ++   +     ++ +  +  
Sbjct: 137 ALPDDPQEILRIAREVGYPVIIKASGGGGGRGMRVVYTEAALLNAVNMTRSEAGAAFNNP 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
           ++ +E++++    +   V+ D   +   +            K          PA  IP  
Sbjct: 197 EVYLEKFLENPRHVEIQVLADGGRNAVWLGERDCSMQRRHQK-----VIEEAPAPGIPRR 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + + +      A + +G RG    +FL+   + + +++E+N 
Sbjct: 252 LIERIGDRCADACRKMGYRGAGTFEFLY--ENGEFYFIEMNT 291


>gi|310659729|ref|YP_003937450.1| carbamoyl-phosphate synthase large subunit [Clostridium sticklandii
           DSM 519]
 gi|308826507|emb|CBH22545.1| carbamoyl-phosphate synthase large subunit [Clostridium
           sticklandii]
          Length = 1067

 Score = 73.6 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 56/287 (19%), Positives = 115/287 (40%), Gaps = 35/287 (12%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAF-- 55
           G ++E + S   G     AL++ G +V  I         D + +  + +  +  D     
Sbjct: 21  GQAAEFDYS---GTQACQALKEEGIEVVLINSNPATIMTDAEAADKIYIEPITLDYVKKI 77

Query: 56  -------NVLHGNFGEDG-------LVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
                  ++L G  G+           Q IL+   I    + I       D+   K++++
Sbjct: 78  IELERPDSLLPGMGGQTALNMALELHDQGILDSYNIKIIGTSIDGIKQGEDRYLFKELMN 137

Query: 102 SCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G P+  S +       ++    I  P +++P       G  + + +  + L +    S
Sbjct: 138 RIGEPMIQSEIFTELEAGINYASQIGYPVIVRPAYTLGGTGGGIAETEDQLRLIMKSGLS 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
           ++   Q+LIE+ + G  E+   VM DA+ +  +I+V   + +   +   + +S  V P++
Sbjct: 198 YSPVGQVLIEKSIKGWKEIEYEVMRDANGN--KISVCNMENFD-PVGIHTGDSIVVAPSQ 254

Query: 219 -IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +    Y+ ++  +    +AIG  G     F  +P S +   +EIN 
Sbjct: 255 TLSDKDYQMLRTSSLKIIEAIGIEGGCNVQFALNPDSFEYAVIEINP 301



 Score = 70.2 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 37/246 (15%), Positives = 87/246 (35%), Gaps = 20/246 (8%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
             V  V+   KPD       G       +   +    IP   +      LS D+ +  + 
Sbjct: 619 EDVLSVIDKEKPDGVILQFGGQTA--IKLADFISSKGIPIYGTSASQIDLSEDREKFDEF 676

Query: 100 VSSCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
           + S  +       +      + + + +  P +++P       G+ +   +  +   L  +
Sbjct: 677 LESLDIKRPKGKAIFNLEDGIKTANELGYPLLVRPSYVLGGQGMKICYAESELTEYLSNA 736

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDAS---LDVTEIAVPKSDFYSYELKYSSLNSTHV 214
              +  + +LI+QY+ G EL    + D     L      + ++  +S        + T  
Sbjct: 737 FKKDDKNPVLIDQYIVGKELEVDAICDGDSVLLPGIMEHIERAGIHS------GDSMTVY 790

Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN-----VQPGMT 269
            P  +   I +++  +      A+  +G+    ++      +++ +E+N       P ++
Sbjct: 791 PPQNVSSHIIEQITEVTRKIALALNVKGLINIQYI--AYEEQLYVIEVNPRASRTVPYIS 848

Query: 270 PVSIFP 275
            VS  P
Sbjct: 849 KVSNVP 854


>gi|118594896|ref|ZP_01552243.1| acetyl-CoA carboxylase [Methylophilales bacterium HTCC2181]
 gi|118440674|gb|EAV47301.1| acetyl-CoA carboxylase [Methylophilales bacterium HTCC2181]
          Length = 472

 Score = 73.6 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 79/221 (35%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+  + AI +   I +        +   DK+ +++ +   GVPV P    
Sbjct: 76  AIHPGYGFLSENPELAAICKRRGIKFIGPDDSVISRMGDKVEARKAMIEAGVPVIPGSEG 135

Query: 114 NRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
           N   +D        I  P ++K   GG   GI     ++ +  +      +++      +
Sbjct: 136 NIKDLDEAVVIAKSIGYPVMLKATNGGGGRGIRRCDNEKELLSNYDRVISEATKAFGSPE 195

Query: 166 LLIEQ-YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDI 223
           L IE+  V    +   ++ D       +            K        + P  ++  D 
Sbjct: 196 LFIEKCVVTPKHIEVQILADQKGHAIHLYERDCSIQRRNQKL-----IEIAPSPQLSEDQ 250

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              +  LA  A +A+        +FL D    K +++E+N 
Sbjct: 251 RNYIGDLAVKAAKAVNYENAGTVEFLLDSED-KFYFMEMNT 290


>gi|303261595|ref|ZP_07347542.1| carbamoyl phosphate synthase large subunit [Streptococcus
           pneumoniae SP14-BS292]
 gi|303267153|ref|ZP_07353021.1| carbamoyl phosphate synthase large subunit [Streptococcus
           pneumoniae BS457]
 gi|303268446|ref|ZP_07354241.1| carbamoyl phosphate synthase large subunit [Streptococcus
           pneumoniae BS458]
 gi|302637175|gb|EFL67663.1| carbamoyl phosphate synthase large subunit [Streptococcus
           pneumoniae SP14-BS292]
 gi|302642052|gb|EFL72404.1| carbamoyl phosphate synthase large subunit [Streptococcus
           pneumoniae BS458]
 gi|302643314|gb|EFL73593.1| carbamoyl phosphate synthase large subunit [Streptococcus
           pneumoniae BS457]
          Length = 1058

 Score = 73.6 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 26/228 (11%), Positives = 77/228 (33%), Gaps = 19/228 (8%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--QHLISPPYV 129
           L    +    + +     + D+   +Q +    +P  P          +     I  P +
Sbjct: 646 LAKAGVTILGTQVADLDRAEDRDLFEQALKELDIPQPPGQTATNEEEAALAARKIGFPVL 705

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS--- 186
           ++P        + +++ ++ +   +  +   +    +L++ Y+ G E     + D     
Sbjct: 706 VRPSYVLGGRAMEIVENEEDLRSYMRTAVKASPDHPVLVDSYIVGQECEVDAISDGKNVL 765

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISR 245
           +      + ++  +S        +S  V P + +   + + +          + C G+  
Sbjct: 766 IPGIMEHIERAGVHS-------GDSMAVYPPQTLSQKVQETIADYTKRLAIGLHCLGMMN 818

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
             F+      KV+ +E+N +   T     P ++        ++   ++
Sbjct: 819 IQFVI--KDEKVYVIEVNPRASRT----VPFLSKVTNIPMAQVATKLI 860



 Score = 67.5 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 54/302 (17%), Positives = 114/302 (37%), Gaps = 37/302 (12%)

Query: 20  KACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNVL 58
           +AC S L++ G++V  ++        D+ +                +L    PD     L
Sbjct: 32  QACLS-LKEEGYEVVLVNSNPATIMTDKEIADKVYIEPITLEFVTRILRKEGPDALLPTL 90

Query: 59  HGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
            G  G +  ++     IL+ L +    + + A   + D+   KQ++     P+  S +VN
Sbjct: 91  GGQTGLNMAMELSKNGILDELGVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIVN 150

Query: 115 --RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                +     I  P +++P       G  +   ++ +          +   Q LIE+ +
Sbjct: 151 TVEEAVAFAATIGYPVIVRPAFTLGGTGGGMCANEKELREITENGLKLSPVTQCLIERSI 210

Query: 173 DG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRL 230
            G  E+   VM D++ +   + V   + +   +   + +S    PA+ +     + ++  
Sbjct: 211 AGFKEIEYEVMRDSADNA--LVVCNMENFD-PVGIHTGDSIVFAPAQTMSDYENQMLRDA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    +A+   G        DP S K + +E+N  P ++  S     +   GY   +L  
Sbjct: 268 SLSIIRALKIEGGCNVQLALDPNSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325


>gi|206579288|ref|YP_002236329.1| acetyl-CoA carboxylase, biotin carboxylase [Klebsiella pneumoniae
           342]
 gi|288933317|ref|YP_003437376.1| acetyl-CoA carboxylase, biotin carboxylase [Klebsiella variicola
           At-22]
 gi|290511633|ref|ZP_06551002.1| acetyl-CoA carboxylase, biotin carboxylase [Klebsiella sp. 1_1_55]
 gi|206568346|gb|ACI10122.1| acetyl-CoA carboxylase, biotin carboxylase [Klebsiella pneumoniae
           342]
 gi|288888046|gb|ADC56364.1| acetyl-CoA carboxylase, biotin carboxylase [Klebsiella variicola
           At-22]
 gi|289776626|gb|EFD84625.1| acetyl-CoA carboxylase, biotin carboxylase [Klebsiella sp. 1_1_55]
          Length = 449

 Score = 73.6 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 42/223 (18%), Positives = 82/223 (36%), Gaps = 21/223 (9%)

Query: 56  NVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111
             +H  +G   E+      +E     +         L  DK+ +   +   GVP  P   
Sbjct: 76  IAIHPGYGFLSENANFAEQVERSGFIFIGPKADTIRLMGDKVSAITAMKKAGVPTVPGSD 135

Query: 112 --LVNRFTMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHG 163
             L +    +  H   I  P +IK   GG   G+ V++ D  +   +     ++ +  + 
Sbjct: 136 GPLTDDMDANRAHAKRIGYPVIIKASGGGGGRGMRVVRSDAELAQSISMTKAEAKAAFNN 195

Query: 164 DQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPL 221
           D + +E+Y++    +   V+ D   +   +A           K          PA  I  
Sbjct: 196 DMVYMEKYLENPRHIEIQVLADGQGNAIYLAERDCSMQRRHQK-----VVEEAPAPGITP 250

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           ++ + +      A   IG RG    +FLF   + + +++E+N 
Sbjct: 251 ELRRYIGERCAKACVDIGYRGAGTFEFLF--ENGEFYFIEMNT 291


>gi|153208242|ref|ZP_01946652.1| acetyl-CoA carboxylase, biotin carboxylase [Coxiella burnetii 'MSU
           Goat Q177']
 gi|165923953|ref|ZP_02219785.1| acetyl-CoA carboxylase, biotin carboxylase [Coxiella burnetii RSA
           334]
 gi|212217948|ref|YP_002304735.1| biotin carboxylase [Coxiella burnetii CbuK_Q154]
 gi|120576147|gb|EAX32771.1| acetyl-CoA carboxylase, biotin carboxylase [Coxiella burnetii 'MSU
           Goat Q177']
 gi|165916609|gb|EDR35213.1| acetyl-CoA carboxylase, biotin carboxylase [Coxiella burnetii RSA
           334]
 gi|212012210|gb|ACJ19590.1| biotin carboxylase [Coxiella burnetii CbuK_Q154]
          Length = 448

 Score = 73.6 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 36/222 (16%), Positives = 79/222 (35%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---S 110
            +H  +G   E+      +E     +      A  L  +K+ + + +   G+P  P    
Sbjct: 77  AIHPGYGFLAENPNFCEQVEKSGFVFIGPSHEAIHLMGNKVSAIKAMKEAGLPCIPGSDG 136

Query: 111 ILVNRFTMD--SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGD 164
            L      +      I  P +IK   GG   G+ V+ ++  +   +     ++++    D
Sbjct: 137 ALGKDGDANLLIAERIGYPVLIKAAGGGGGRGMRVVHREAELLNAIAMTRTEAAAAFGTD 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
           ++ +E++++    +   V+GD       +            K          PA  I   
Sbjct: 197 EVYMEKFLENPRHIEIQVLGDGQGHAIHLGERDCSMQRRHQK-----VIEEAPAPGITPK 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
               +      A  A+  RG    +FL+   + + +++E+N 
Sbjct: 252 QRATIGERCVQACIAMNYRGAGTFEFLY--ENGEFYFIEMNT 291


>gi|21229722|ref|NP_635639.1| biotin carboxylase [Xanthomonas campestris pv. campestris str. ATCC
           33913]
 gi|66766599|ref|YP_241361.1| biotin carboxylase [Xanthomonas campestris pv. campestris str.
           8004]
 gi|21111209|gb|AAM39563.1| biotin carboxylase [Xanthomonas campestris pv. campestris str. ATCC
           33913]
 gi|66571931|gb|AAY47341.1| biotin carboxylase [Xanthomonas campestris pv. campestris str.
           8004]
          Length = 675

 Score = 73.6 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 41/220 (18%), Positives = 74/220 (33%), Gaps = 19/220 (8%)

Query: 58  LHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL-- 112
           +H  +G   E+           + +      A     DK  +K ++   GVP+ P     
Sbjct: 91  IHPGYGFLSENAGFADACAQAGVVFIGPPAQAIRAMGDKSAAKALMQRAGVPLTPGYHGD 150

Query: 113 --VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQL 166
                F       I  P +IK   GG   G+  +    +    L     ++ S      +
Sbjct: 151 EQAPAFLRAQADAIGYPVLIKASAGGGGKGMRRVDASAAFEDALASCQREAQSAFGNAHV 210

Query: 167 LIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIY 224
           L+E+YV+    +   V  D     T  AV         ++          PA  +     
Sbjct: 211 LVEKYVERPRHIEIQVFAD-----THGAVVHLFERDCSVQRRHQKVLDEAPAPGMTEQRR 265

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             + + A  A +A+G  G    +F+  P     +++E+N 
Sbjct: 266 AAMGKAAVDAARAVGYVGAGTVEFIAGP-DGDFYFMEMNT 304


>gi|295094928|emb|CBK84019.1| carbamoyl-phosphate synthase, large subunit [Coprococcus sp.
           ART55/1]
          Length = 1068

 Score = 73.6 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 31/230 (13%), Positives = 88/230 (38%), Gaps = 20/230 (8%)

Query: 70  AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC--PSILVNRFTMDSQHLISPP 127
           A++E+  +P   +       + D+    +++  C +P     ++      +++ + +  P
Sbjct: 649 ALMEM-GVPILGTSAENVDAAEDRELFDEILEKCCIPRPAGKTVFTREQALEAANELGYP 707

Query: 128 YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS- 186
            +++P       G+ +   D+ I   +   +       +L+++Y+ G E+    + D   
Sbjct: 708 VLVRPSYVLGGQGMQIAISDKDIIEFMDIINRHTQEHPILVDKYIMGKEVEVDAVCDGDD 767

Query: 187 --LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGI 243
             +      V ++  +S        +S  V PA+ +     + +         ++   G+
Sbjct: 768 ILIPGIMEHVERAGIHS-------GDSISVYPAQTLSPKTKRVIADYTKKLANSLHVIGL 820

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
               F+    + +V+ +E+N +   T     P ++   G    +L   ++
Sbjct: 821 INIQFI--AYNDEVYVIEVNPRSSRT----VPYISKVTGIPIVDLATRVI 864



 Score = 58.2 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 42/245 (17%), Positives = 90/245 (36%), Gaps = 12/245 (4%)

Query: 27  EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHS 82
           +    +   +DV   V  ++   KPD     L G    +  ++      L   ++    +
Sbjct: 62  DKVYIEPLTVDV---VKAIIEKEKPDSLLPTLGGQAALNIAMELDESGFLREHDVLLIGT 118

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLG 140
                  + D++  K+ +     PV PS +V   +  ++    I  P V++P       G
Sbjct: 119 SSTTIKKAEDRLEFKKTMEKIHEPVAPSEVVTTVQGGLNFVKKIGYPVVLRPAYTLGGSG 178

Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDF 199
             + + ++     L+     +   Q+L+E+ + G  E+   VM DA+   T I V   + 
Sbjct: 179 GGIAENEEEFKEILMNGLRLSRVGQVLVERCIAGWKEIEYEVMRDANG--TCITVCNMEN 236

Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
                 ++  +        +    Y+ ++  A      +  +G     F  +P S +   
Sbjct: 237 LDPVGVHTGDSIVVAPSQTLGDKEYQMLRSSALNIISELNIKGGCNVQFALNPNSFEYCV 296

Query: 260 LEINV 264
           +E+N 
Sbjct: 297 IEVNP 301


>gi|294667773|ref|ZP_06732983.1| biotin carboxylase [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 10535]
 gi|292602399|gb|EFF45840.1| biotin carboxylase [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 10535]
          Length = 675

 Score = 73.6 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 74/221 (33%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H  +G   E+           I +      A     DK  +K ++   GVP+ P    
Sbjct: 90  AIHPGYGFLSENAAFAEACAHAGIVFIGPPAAAIRAMGDKSAAKALMQRAGVPLTPGYHG 149

Query: 113 ---VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
                 F       I  P +IK   GG   G+  +    +    L     ++ S      
Sbjct: 150 DEQAPAFLRAQADAIGYPVLIKASAGGGGKGMRRVDASAAFDDALASCQREAQSAFGNAH 209

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           +L+E+YV     +   V GD   +V  +           ++          PA  +    
Sbjct: 210 VLVEKYVQRPRHIEIQVFGDTHGEVVYL-----FERDCSVQRRHQKVLEEAPAPGMSEAR 264

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              + + A  A QA+G  G    +F+  P     +++E+N 
Sbjct: 265 RAAMGKAAVDAAQAVGYVGAGTVEFIAGP-DGDFYFMEMNT 304


>gi|218514575|ref|ZP_03511415.1| Carbamoyl-phosphate synthase L chain ATP-binding protein [Rhizobium
           etli 8C-3]
          Length = 412

 Score = 73.6 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 40/225 (17%), Positives = 84/225 (37%), Gaps = 22/225 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      +E   + +  +   A      K  +K+++ + GVPV P  L 
Sbjct: 82  AIHPGYGFLSENAEFAEAVEKAGMIWVGAPPTAIRAMGLKDAAKELMQAAGVPVTPGYLG 141

Query: 114 NRFTM----DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
              +          I  P +IK + GG   G+  + + +     L     ++++    D+
Sbjct: 142 PDQSEARLTAEADAIGYPVLIKAVAGGGGKGMRRVDRREDFAEGLASCRREAAASFSDDR 201

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           +LIE+Y+ +   +   V  D S +               L+          PA  +    
Sbjct: 202 VLIERYIANPRHIEVQVFADKSGNCV-----HLFERDCSLQRRHQKVIEEAPAPGLDAAA 256

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR----KVFWLEINV 264
              +   A  A +A+   G    +F+ D  +     +++++E+N 
Sbjct: 257 RAAICDAAVKAARAVNYVGAGTIEFIADASAGLNPDRIWFMEMNT 301


>gi|154706577|ref|YP_001423699.1| biotin carboxylase [Coxiella burnetii Dugway 5J108-111]
 gi|154355863|gb|ABS77325.1| biotin carboxylase [Coxiella burnetii Dugway 5J108-111]
          Length = 448

 Score = 73.6 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 36/222 (16%), Positives = 79/222 (35%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---S 110
            +H  +G   E+      +E     +      A  L  +K+ + + +   G+P  P    
Sbjct: 77  AIHPGYGFLAENPNFCEQVEKSGFVFIGPSHEAIHLMGNKVSAIKAMKEAGLPCIPGSDG 136

Query: 111 ILVNRFTMD--SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGD 164
            L      +      I  P +IK   GG   G+ V+ ++  +   +     ++++    D
Sbjct: 137 ALGKDGDANLLIAERIGYPVLIKAAGGGGGRGMRVVHREAELLNAIAMTRTEAAAAFGTD 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
           ++ +E++++    +   V+GD       +            K          PA  I   
Sbjct: 197 EVYMEKFLENPRHIEIQVLGDGQGHAIHLGERDCSMQRRHQK-----VIEEAPAPGITPK 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
               +      A  A+  RG    +FL+   + + +++E+N 
Sbjct: 252 QRATIGERCVQACIAMNYRGAGTFEFLY--ENGEFYFIEMNT 291


>gi|33865364|ref|NP_896923.1| carbamoyl phosphate synthase large subunit [Synechococcus sp. WH
           8102]
 gi|33632533|emb|CAE07345.1| carbamoyl phosphate synthetase, large subunit [Synechococcus sp. WH
           8102]
          Length = 1107

 Score = 73.6 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 56/283 (19%), Positives = 96/283 (33%), Gaps = 44/283 (15%)

Query: 18  SGKACASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLA------------FN 56
           SG     AL   G++V  +         D + +    +  L PD+               
Sbjct: 29  SGTQACKALRSEGYEVILVNSNPASIMTDPEMADRTYIEPLTPDVVTRVIERERPDALLP 88

Query: 57  VLHG--------NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
            + G           E+G     LE   +    + + A   + D++  KQ +   GV VC
Sbjct: 89  TMGGQTALNLAVTLAENGT----LERYGVELIGADLQAIQKAEDRLLFKQAMERIGVQVC 144

Query: 109 PS---ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
           PS     +         + S P +I+P       G  +    +            +   Q
Sbjct: 145 PSGIASTLEEAEAVGAAIGSFPRIIRPAFTLGGSGGGIAYNPEEYAAICKSGLEASPVSQ 204

Query: 166 LLIEQYVDG-IELTCGVMGDASL-DVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
           +LIEQ + G  E    VM D +   V   ++   D           +S  V PA+ +   
Sbjct: 205 ILIEQSLLGWKEFELEVMRDQADNVVILCSIENLDPMGVHT----GDSITVAPAQTLTDR 260

Query: 223 IYKEVQRLAFLAHQAIG-CRGISRSDFLFDPLSRKVFWLEINV 264
            Y+ ++  +    + IG   G S   F  +P +  V  +E+N 
Sbjct: 261 EYQRLRDQSIAIIREIGVATGGSNIQFAINPDNGDVVVIEMNP 303



 Score = 48.6 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 41/269 (15%), Positives = 91/269 (33%), Gaps = 21/269 (7%)

Query: 32  KVSQID-VDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
            V +++  D  V          LA  +L+    E+G               +   +   +
Sbjct: 644 NVIEVEQPDGVVVQFGGQTPLKLAIPLLNWLNSEEGR------ATGTQIWGTSPESIDRA 697

Query: 91  MDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVIKKDQ 148
            D+ + + ++S   +      L    T   D    +  P V++P        + V+  +Q
Sbjct: 698 EDREQFEAILSQLEIRQPRHGLARSETEARDVATRVGYPVVVRPSYVLGGRAMEVVFDEQ 757

Query: 149 SIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYS 207
            +   +L++        +LI+QY++  +E+    + D   +V    + +   +       
Sbjct: 758 ELNRYMLEAVQVEPDHPVLIDQYLENAVEVDVDALCDHEGNVVIGGLME---HIEPAGIH 814

Query: 208 SLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD---PLSRKVFWLEIN 263
           S +S   LPA  +       ++  +     A+  +G+    F           V+ +E N
Sbjct: 815 SGDSACCLPAVSLGEGALGTIREWSRGLALALKVQGLINLQFAVQRNAEGEEVVYIIEAN 874

Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
            +   T     P +A   G     +   +
Sbjct: 875 PRASRT----VPFVAKATGQPLARIATRL 899


>gi|307273074|ref|ZP_07554320.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecalis
           TX0855]
 gi|306510059|gb|EFM79083.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecalis
           TX0855]
          Length = 1066

 Score = 73.6 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 50/296 (16%), Positives = 107/296 (36%), Gaps = 34/296 (11%)

Query: 25  ALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNVLHGNFG 63
           AL++ G++V  ++        D+ +                +L   +PD     L G  G
Sbjct: 42  ALKEEGYEVVLVNSNPATIMTDKEIADHVYIEPITLEFVSRILRKERPDALLPTLGGQTG 101

Query: 64  EDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFT 117
            +  ++     IL+ L +    + + A   + D+   KQ++     P+  S +VN     
Sbjct: 102 LNMAMELSESGILDELNVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIVNTVEQA 161

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IE 176
           +     I  P +++P       G  +   ++ +          +   Q LIE+ + G  E
Sbjct: 162 VAFAKRIGYPIIVRPAFTLGGTGGGMCDTEEELRQIAENGLKLSPVTQCLIEKSIAGFKE 221

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +   VM D+  +   I V   + +     ++  +        +    Y+ ++  +    +
Sbjct: 222 IEYEVMRDSVDNA--IVVCNMENFDPVGIHTGDSIVFAPSQTLSDYEYQMLRDASLKIIR 279

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           A+   G        DP S   + +E+N  P ++  S     +   GY   +L   +
Sbjct: 280 ALKIEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAKI 331



 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/221 (11%), Positives = 71/221 (32%), Gaps = 13/221 (5%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--QHLISPPYVIKPL 133
            +    + I     + ++   +Q +    +P  P                I  P +++P 
Sbjct: 656 GVKILGTTIEDLDRAENRDLFEQALQELAIPQPPGDTATSAEEAVVIADRIGYPVLVRPS 715

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
                  + +++  + +   +  +   +    +L++ Y+ G E     + D    +    
Sbjct: 716 YVLGGRAMEIVENQKDLEDYMRHAVKASPEHPVLVDSYLLGQECEVDAICDGETVLIPGI 775

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
           +   +           +S  V P + +  +I   +          + C G+    F+   
Sbjct: 776 MEHIERAGVHS----GDSMAVYPPQYLSQEIQATIADYTKKLALGLNCVGMMNIQFVIHE 831

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
              +V+ +E+N +   T     P ++   G    ++    +
Sbjct: 832 --NRVYVIEVNPRASRT----VPFLSKITGIPMAQVATKAI 866


>gi|294627474|ref|ZP_06706057.1| biotin carboxylase [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 11122]
 gi|292598105|gb|EFF42259.1| biotin carboxylase [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 11122]
          Length = 675

 Score = 73.6 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 74/221 (33%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H  +G   E+           I +      A     DK  +K ++   GVP+ P    
Sbjct: 90  AIHPGYGFLSENAAFAEACAHAGIVFIGPPAAAIRAMGDKSAAKALMQRAGVPLTPGYHG 149

Query: 113 ---VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
                 F       I  P +IK   GG   G+  +    +    L     ++ S      
Sbjct: 150 DEQAPAFLRAQADAIGYPVLIKASAGGGGKGMRRVDASAAFDDALASCQREAQSAFGNAH 209

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           +L+E+YV     +   V GD   +V  +           ++          PA  +    
Sbjct: 210 VLVEKYVQRPRHIEIQVFGDTHGEVVYL-----FERDCSVQRRHQKVLEEAPAPGMSEAR 264

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              + + A  A QA+G  G    +F+  P     +++E+N 
Sbjct: 265 RAAMGKAAVDAAQAVGYVGAGTVEFIAGP-DGDFYFMEMNT 304


>gi|212638782|ref|YP_002315302.1| acetyl-CoA carboxylase biotin carboxylase subunit [Anoxybacillus
           flavithermus WK1]
 gi|212560262|gb|ACJ33317.1| Biotin carboxylase [Anoxybacillus flavithermus WK1]
          Length = 450

 Score = 73.6 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 84/221 (38%), Gaps = 18/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     +     + +      A      K  +++ +   GVP+ P    
Sbjct: 77  AIHPGYGFLAENADFAELCRECNVTFVGPSPEAITKMGTKDVARETMRQAGVPIVPGSQG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGD 164
            I      +   + I  P +IK   GG   GI V + +Q +   +       ++++    
Sbjct: 137 IIESMDEAIALANEIGYPVIIKATAGGGGKGIRVARNEQELIKGITITQQEAATAFG-NP 195

Query: 165 QLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            + IE+Y++    +   V+ D+  +V  +            K             +  D+
Sbjct: 196 GVYIEKYIEDFRHVEIQVLADSYGNVIHLGERDCTIQRRLQKLL----EETPSPVLDEDM 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +++   A  A QA+   G    +F++D  +R+ +++E+N 
Sbjct: 252 RQKMGEAAVKAAQAVQYTGAGTVEFIYDYRNRQFYFMEMNT 292


>gi|256829932|ref|YP_003158660.1| carbamoyl-phosphate synthase L chain ATP- binding [Desulfomicrobium
           baculatum DSM 4028]
 gi|256579108|gb|ACU90244.1| Carbamoyl-phosphate synthase L chain ATP- binding [Desulfomicrobium
           baculatum DSM 4028]
          Length = 1229

 Score = 73.6 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 38/244 (15%), Positives = 89/244 (36%), Gaps = 25/244 (10%)

Query: 35  QIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSM 91
            +D+D+ + +  A          +H  +G   ED    +      I +      A  L  
Sbjct: 74  YLDIDKVIAMAKARGVA-----AIHPGWGFASEDESFPSKCADAGIIFIGPTSEAMRLLG 128

Query: 92  DKMRSKQVVSSCGVPVCP---SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQ 148
           +K++ + +    G+PV P     +      +    I  P ++K   GG   GI  +  + 
Sbjct: 129 NKVQVRMLAQKLGIPVVPGSDGAVSVEEAKEVAAQIGLPVMLKAEGGGGGRGIYEVFSED 188

Query: 149 SIPLDLLQSSSWNH----GDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYE 203
            +    +++S+         +L +E+ +     +   V+ D   +V        D     
Sbjct: 189 QLADAFVKASTLAQASFGNPRLYVERLLTSIRHIEIQVIADKYGNVFAF-----DERDCT 243

Query: 204 LKYSSLNSTHVLP---AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260
           ++ +      + P     +  ++  +++  +    +A+G   +   +FL D   R  + +
Sbjct: 244 VQRNHQKLVEITPSPWPGMTEELRDQLKEYSRQLVRAVGYHSLCTVEFLVDATGRA-YLI 302

Query: 261 EINV 264
           E+N 
Sbjct: 303 EVNT 306


>gi|219871450|ref|YP_002475825.1| acetyl-CoA carboxylase biotin carboxylase subunit [Haemophilus
           parasuis SH0165]
 gi|219691654|gb|ACL32877.1| biotin carboxylase subunit of acetyl CoA carboxylase [Haemophilus
           parasuis SH0165]
          Length = 447

 Score = 73.6 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 40/225 (17%), Positives = 83/225 (36%), Gaps = 27/225 (12%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+      +E     +         L  DK+ +   +   GVP  P    
Sbjct: 77  AIHPGYGFLSENANFAEQVENSGFIFIGPTADVIRLMGDKVSAINAMKKAGVPCVPGSGG 136

Query: 111 -----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWN 161
                +  N+   +    I  P +IK   GG   G+ V+  ++ +   +     ++ +  
Sbjct: 137 PIGNDVAKNK---EIAQKIGYPVIIKASGGGGGRGMRVVHHEKDLEESIAMTKAEAKAAF 193

Query: 162 HGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-I 219
           + D + +E+Y++    +   V+ D   +   +A           K          PA  I
Sbjct: 194 NNDMVYMEKYLENPRHIEIQVLADTHGNAVYLAERDCSMQRRHQK-----VVEEAPAPGI 248

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             ++ + +      A + IG RG    +FLF   + + +++E+N 
Sbjct: 249 TPELRQFIGERCANACREIGYRGAGTFEFLF--ENGEFYFIEMNT 291


>gi|41406392|ref|NP_959228.1| pyruvate carboxylase [Mycobacterium avium subsp. paratuberculosis
           K-10]
 gi|41394741|gb|AAS02611.1| Pca [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 1127

 Score = 73.6 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 43/248 (17%), Positives = 87/248 (35%), Gaps = 20/248 (8%)

Query: 28  DAGFKVS-QIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           + G  V   + VD  V   LA    D  +   +G   E+  + A      I +       
Sbjct: 53  EEGHPVRAYLSVDEIVDTALA-CGADAIYPG-YGFLSENPDLAAACAAAGITFVGPSAEV 110

Query: 87  SALSMDKMRSKQVVSSCGVPV----CPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGII 142
             L+ DK R+     + G+PV     PS  V    + +   ++ P  +K + GG   G+ 
Sbjct: 111 LELTGDKSRAIAAARAAGLPVLASSPPSTSVQEL-LSAAETMTFPLFVKAVAGGGGRGMR 169

Query: 143 VIKKDQSIPLDLLQS-----SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKS 197
            +    ++   +  +     S++      L +  ++   +   ++ D   +V  +     
Sbjct: 170 RVTDPGALAEAIEAASREAESAFGDASVFLEQAVINPRHIEVQILADTHGNVMHLYE--- 226

Query: 198 DFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256
                 ++        + PA  +   + + +   A    ++IG       +FL D     
Sbjct: 227 --RDCSVQRRHQKVIEIAPAPNLDPALRERICADAVAFARSIGYTCAGTVEFLLDERGNH 284

Query: 257 VFWLEINV 264
           VF  E+N 
Sbjct: 285 VFI-EMNP 291


>gi|307246800|ref|ZP_07528866.1| Biotin carboxylase [Actinobacillus pleuropneumoniae serovar 1 str.
           4074]
 gi|307255783|ref|ZP_07537585.1| Biotin carboxylase [Actinobacillus pleuropneumoniae serovar 9 str.
           CVJ13261]
 gi|307260235|ref|ZP_07541943.1| Biotin carboxylase [Actinobacillus pleuropneumoniae serovar 11 str.
           56153]
 gi|306852271|gb|EFM84510.1| Biotin carboxylase [Actinobacillus pleuropneumoniae serovar 1 str.
           4074]
 gi|306861246|gb|EFM93238.1| Biotin carboxylase [Actinobacillus pleuropneumoniae serovar 9 str.
           CVJ13261]
 gi|306865682|gb|EFM97562.1| Biotin carboxylase [Actinobacillus pleuropneumoniae serovar 11 str.
           56153]
          Length = 447

 Score = 73.6 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 80/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         L  DK+ +   +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAEQVENSGFTFIGPTADVIRLMGDKVSAINAMKKAGVPCVPGSDG 136

Query: 112 ---LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
                     +    I  P +IK   GG   G+ V+  ++ +   +     ++ +  + D
Sbjct: 137 PVGNDPVKNKEIAKRIGYPVIIKASGGGGGRGMRVVYNEKDLEESIAMTKAEAKAAFNND 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+Y++    +   V+ D   +   +A           K          PA  I  +
Sbjct: 197 MVYMEKYLENPRHIEIQVLADTHGNAVYLAERDCSMQRRHQK-----VVEEAPAPGITPE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + K +      A + IG RG    +FLF   + + +++E+N 
Sbjct: 252 LRKFIGERCANACREIGYRGAGTFEFLF--ENGEFYFIEMNT 291


>gi|300309729|ref|YP_003773821.1| biotin carboxylase [Herbaspirillum seropedicae SmR1]
 gi|300072514|gb|ADJ61913.1| biotin carboxylase protein [Herbaspirillum seropedicae SmR1]
          Length = 459

 Score = 73.6 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 36/222 (16%), Positives = 80/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      +E     +         +  DK+ +KQ +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAERVEKSGFVFIGPRAENIRMMGDKVSAKQAMIRAGVPCVPGSDG 136

Query: 114 -----NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
                 +  +     I  P +IK   GG   G+ V+  + ++   +     ++ +     
Sbjct: 137 ALPDNPKEIVQIARKIGYPVIIKAAGGGGGRGMRVVHTEAALINAVTMTKTEAGAAFGNP 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
           ++ +E+Y++    +   ++ D       +            K          PA  IP  
Sbjct: 197 EVYMEKYLENPRHVEIQILADEHKQAIWLGERDCSMQRRHQK-----VIEEAPAPGIPRK 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           I +++      A + +  RG    +FL+   + + +++E+N 
Sbjct: 252 IIEKIGERCAEACRKMNYRGAGTFEFLY--ENEEFYFIEMNT 291


>gi|255949338|ref|XP_002565436.1| Pc22g15180 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211592453|emb|CAP98806.1| Pc22g15180 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 668

 Score = 73.6 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 35/192 (18%), Positives = 74/192 (38%), Gaps = 12/192 (6%)

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL----ISPPYVIKPLKG 135
              G    A + DK+++K +   CGVPV  ++     ++         +  P +IK + G
Sbjct: 110 IGPGWENLARTGDKLQAKHLAQQCGVPVLEAMSQPTTSVAEARAFATQVGFPVMIKAVDG 169

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ-YVDGI-ELTCGVMGDASLDVTEIA 193
           G   GI +++++  +   + ++   +    + +E+  VDG   +   ++GD +  V  + 
Sbjct: 170 GGGRGIRLVREEHELDNSIQRAIGESPSRTVFVEKAAVDGFHHVEIQIIGDGTGRVRHLW 229

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
                      +          PA +    +   V   A      I  R +   +FL   
Sbjct: 230 E-----RDCSAQRRFQKVVECAPALVRDRALVGRVIESALRMASEICYRSLGTFEFLVSE 284

Query: 253 LSRKVFWLEINV 264
              + ++LE+N 
Sbjct: 285 QRGEFYFLEVNP 296


>gi|149019270|ref|ZP_01834632.1| carbamoyl phosphate synthase large subunit [Streptococcus
           pneumoniae SP23-BS72]
 gi|147931140|gb|EDK82119.1| carbamoyl phosphate synthase large subunit [Streptococcus
           pneumoniae SP23-BS72]
          Length = 1058

 Score = 73.6 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 26/228 (11%), Positives = 77/228 (33%), Gaps = 19/228 (8%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--QHLISPPYV 129
           L    +    + +     + D+   +Q +    +P  P          +     I  P +
Sbjct: 646 LAKAGVTILGTQVADLDRAEDRDLFEQALKELDIPQPPGQTATNEEEAALAARKIGFPVL 705

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS--- 186
           ++P        + +++ ++ +   +  +   +    +L++ Y+ G E     + D     
Sbjct: 706 VRPSYVLGGRAMEIVENEEDLRSYMRTAVKASPDHPVLVDSYIVGQECEVDAISDGKDVL 765

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISR 245
           +      + ++  +S        +S  V P + +   + + +          + C G+  
Sbjct: 766 IPGIMEHIERAGVHS-------GDSMAVYPPQTLSQKVQETIADYTKRLAIGLHCLGMMN 818

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
             F+      KV+ +E+N +   T     P ++        ++   ++
Sbjct: 819 IQFVI--KDEKVYVIEVNPRASRT----VPFLSKVTNIPMAQVATKLI 860



 Score = 67.5 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 51/301 (16%), Positives = 111/301 (36%), Gaps = 35/301 (11%)

Query: 20  KACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNVL 58
           +AC S L++ G++V  ++        D+ +                +L   +PD     L
Sbjct: 32  QACLS-LKEEGYEVVLVNSNPATIMTDKEIADKVYIEPITLEFVTRILRKERPDALLPTL 90

Query: 59  HGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
            G  G +  ++     IL+ L +    + + A   + D+   KQ++     P+  S +VN
Sbjct: 91  GGQTGLNMAMELSKNGILDELGVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIVN 150

Query: 115 --RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                +     I  P +++P       G  +   ++ +          +   Q LIE+ +
Sbjct: 151 TVEEAVAFAATIGYPVIVRPAFTLGGTGGGMCANEKELREITENGLKLSPVTQCLIERSI 210

Query: 173 DG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
            G  E+   VM D++ +   + V   + +     ++  +        +     + ++  +
Sbjct: 211 AGFKEIEYEVMRDSADNA--LVVCNMENFDPVGIHTGDSIVFAPVQTMSDYENQMLRDAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S K + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LSIIRALKIEGGCNVQLALDPNSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325


>gi|149012332|ref|ZP_01833401.1| carbamoyl phosphate synthase large subunit [Streptococcus
           pneumoniae SP19-BS75]
 gi|168493195|ref|ZP_02717338.1| carbamoyl-phosphate synthase, large subunit [Streptococcus
           pneumoniae CDC3059-06]
 gi|182684209|ref|YP_001835956.1| carbamoyl-phosphate synthase large subunit [Streptococcus
           pneumoniae CGSP14]
 gi|221231963|ref|YP_002511115.1| carbamoyl-phosphate synthase large chain [Streptococcus pneumoniae
           ATCC 700669]
 gi|237649974|ref|ZP_04524226.1| carbamoyl phosphate synthase large subunit [Streptococcus
           pneumoniae CCRI 1974]
 gi|237821120|ref|ZP_04596965.1| carbamoyl phosphate synthase large subunit [Streptococcus
           pneumoniae CCRI 1974M2]
 gi|303254479|ref|ZP_07340584.1| carbamoyl phosphate synthase large subunit [Streptococcus
           pneumoniae BS455]
 gi|303258912|ref|ZP_07344891.1| carbamoyl phosphate synthase large subunit [Streptococcus
           pneumoniae SP-BS293]
 gi|303264265|ref|ZP_07350185.1| carbamoyl phosphate synthase large subunit [Streptococcus
           pneumoniae BS397]
 gi|226700939|sp|B2IQ67|CARB_STRPS RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|254813605|sp|B8ZJT9|CARB_STRPJ RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|147763658|gb|EDK70593.1| carbamoyl phosphate synthase large subunit [Streptococcus
           pneumoniae SP19-BS75]
 gi|182629543|gb|ACB90491.1| carbamoyl-phosphate synthase large subunit [Streptococcus
           pneumoniae CGSP14]
 gi|183576639|gb|EDT97167.1| carbamoyl-phosphate synthase, large subunit [Streptococcus
           pneumoniae CDC3059-06]
 gi|220674423|emb|CAR68975.1| carbamoyl-phosphate synthase large chain [Streptococcus pneumoniae
           ATCC 700669]
 gi|302598565|gb|EFL65606.1| carbamoyl phosphate synthase large subunit [Streptococcus
           pneumoniae BS455]
 gi|302639855|gb|EFL70311.1| carbamoyl phosphate synthase large subunit [Streptococcus
           pneumoniae SP-BS293]
 gi|302646077|gb|EFL76304.1| carbamoyl phosphate synthase large subunit [Streptococcus
           pneumoniae BS397]
          Length = 1058

 Score = 73.6 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 26/228 (11%), Positives = 77/228 (33%), Gaps = 19/228 (8%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--QHLISPPYV 129
           L    +    + +     + D+   +Q +    +P  P          +     I  P +
Sbjct: 646 LAKAGVTILGTQVADLDRAEDRDLFEQALKELDIPQPPGQTATNEEEAALAARKIGFPVL 705

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS--- 186
           ++P        + +++ ++ +   +  +   +    +L++ Y+ G E     + D     
Sbjct: 706 VRPSYVLGGRAMEIVENEEDLRSYMRTAVKASPDHPVLVDSYIVGQECEVDAISDGKNVL 765

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISR 245
           +      + ++  +S        +S  V P + +   + + +          + C G+  
Sbjct: 766 IPGIMEHIERAGVHS-------GDSMAVYPPQTLSQKVQETIADYTKRLAIGLHCLGMMN 818

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
             F+      KV+ +E+N +   T     P ++        ++   ++
Sbjct: 819 IQFVI--KDEKVYVIEVNPRASRT----VPFLSKVTNIPMAQVATKLI 860



 Score = 67.5 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 54/302 (17%), Positives = 114/302 (37%), Gaps = 37/302 (12%)

Query: 20  KACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNVL 58
           +AC S L++ G++V  ++        D+ +                +L    PD     L
Sbjct: 32  QACLS-LKEEGYEVVLVNSNPATIMTDKEIADKVYIEPITLEFVTRILRKEGPDALLPTL 90

Query: 59  HGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
            G  G +  ++     IL+ L +    + + A   + D+   KQ++     P+  S +VN
Sbjct: 91  GGQTGLNMAMELSKNGILDELGVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIVN 150

Query: 115 --RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                +     I  P +++P       G  +   ++ +          +   Q LIE+ +
Sbjct: 151 TVEEAVAFAATIGYPVIVRPAFTLGGTGGGMCANEKELREITENGLKLSPVTQCLIERSI 210

Query: 173 DG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRL 230
            G  E+   VM D++ +   + V   + +   +   + +S    PA+ +     + ++  
Sbjct: 211 AGFKEIEYEVMRDSADNA--LVVCNMENFD-PVGIHTGDSIVFAPAQTMSDYENQMLRDA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    +A+   G        DP S K + +E+N  P ++  S     +   GY   +L  
Sbjct: 268 SLSIIRALKIEGGCNVQLALDPNSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325


>gi|119872790|ref|YP_930797.1| lysine biosynthesis enzyme LysX [Pyrobaculum islandicum DSM 4184]
 gi|119674198|gb|ABL88454.1| L-2-aminoadipate N-acetyltransferase [Pyrobaculum islandicum DSM
           4184]
          Length = 282

 Score = 73.6 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 39/183 (21%), Positives = 71/183 (38%), Gaps = 18/183 (9%)

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--QHLISPPYVIKPLKGGSSLGIIVIKK 146
           LS DK  +   +   GVP   + LV            +S P +IKP  G     + + K 
Sbjct: 86  LSHDKYLTYLRLREAGVPTPRTYLVFGLEAAKSVARRLSYPVIIKPTDGSWGRFVSLAKS 145

Query: 147 DQSIPLDLLQSSSWNHGDQL-LIEQYVD--GIELTCGVMGDASLDVTEIAVPKSDFYSYE 203
            + +   +L   +      + L+++YV+  G ++   V+G+ ++      V      S +
Sbjct: 146 VEDLETVILHRQAMESDLHIYLVQEYVEKPGRDIRVTVVGERAVAAIYRIV------STD 199

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            + ++       P KI  ++      +A  A +A+G    S  D       R    LE+N
Sbjct: 200 WRTNTARGGRAEPVKIDPELED----IAVKASKAVG-TYYSGVD--VVESERGYMVLEVN 252

Query: 264 VQP 266
             P
Sbjct: 253 GVP 255


>gi|291544810|emb|CBL17919.1| carbamoyl-phosphate synthase large subunit [Ruminococcus sp. 18P13]
          Length = 1064

 Score = 73.6 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 50/286 (17%), Positives = 97/286 (33%), Gaps = 33/286 (11%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQIDVD---------------------RSVGLV 45
           G ++E + +   G     AL+  G +V  I+ +                      +V  V
Sbjct: 21  GQAAEFDYA---GTQACRALKQEGLEVVLINSNPATIMTDKAMADKIYIEPLTLETVKRV 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   KPD   + L G  G    +Q      L+   +    +       + D+   K  + 
Sbjct: 78  IEIEKPDSVLSTLGGQTGLTLSMQLAAEGFLDAHNVKLLGADPETIHKAEDRQAFKDTME 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G P  PS +V      +D    I  P +++P       G  +   ++ +         
Sbjct: 138 KIGEPCIPSKVVETIEDAVDFAEEIGYPVIVRPAFTLGGTGGGIAADEEELRDIAKNGLR 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   Q+LIE+ + G  E+   V+ D   +V  I V   + +     ++  +        
Sbjct: 198 LSPITQVLIEKCISGWKEIEFEVIRDRKGNV--ITVCSMENFDPVGVHTGDSIVIAPAVT 255

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +    Y+ ++  A    Q +   G     F   P S +   +E+N 
Sbjct: 256 LSDREYQMLRTAAINIIQELKVEGGCNCQFALHPTSFEYAVIEVNP 301



 Score = 61.7 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 32/225 (14%), Positives = 86/225 (38%), Gaps = 13/225 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           L  + +    +       + D+ R  +++  C +P      V   +  + + + +  P +
Sbjct: 645 LADMGVNILGTSADDIDAAEDRERFDELLERCQIPRPAGHTVMTMKEAVAAANDLGYPVL 704

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           ++P        +I+   D  +   +   +     + +LI++Y+ G E+    + D     
Sbjct: 705 LRPSYVLGGQNMIIAHSDSDVVEYMGIITRTMIENPVLIDKYMMGTEVEVDAICDG---- 760

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           T+  +P    +       S +S  V PA+ +  +I + +          +  +G+   + 
Sbjct: 761 TDFLIPGIMEHIERAGVHSGDSISVYPAQTLSKEIRETIVEYTRRLAMELHVKGL--VNI 818

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            +   + +V+ +E+N +   T     P ++   G    ++   +V
Sbjct: 819 QYVVYNNQVYVIEVNPRSSRT----VPYISKVTGIPMVDIATKLV 859


>gi|262369645|ref|ZP_06062973.1| acetyl/propionyl-CoA carboxylase [Acinetobacter johnsonii SH046]
 gi|262315713|gb|EEY96752.1| acetyl/propionyl-CoA carboxylase [Acinetobacter johnsonii SH046]
          Length = 663

 Score = 73.6 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 75/221 (33%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       +   I +    + A      K  SK ++   GVP+ P    
Sbjct: 77  AIHPGYGFLSENDQFANACQENNIVFIGPPVDAILAMGLKATSKSLMEKAGVPLTPGYHG 136

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
                D        I  P +IK   GG   G+ ++ + +     L    S        D 
Sbjct: 137 TNQDPDFLKQQADAIGYPVLIKASAGGGGKGMRLVDRGEDFLSHLASCKSEARSSFGNDD 196

Query: 166 LLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDI 223
           +L+E+Y V    +   V GD   +               ++          PA K+    
Sbjct: 197 VLVERYVVQPRHIEVQVFGDTHGNYV-----HLFERDCSVQRRHQKVLEEAPAPKMAESK 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +++ A  A +A+   G    +F+        +++E+N 
Sbjct: 252 LETMRQAAIDAARAVDYVGAGTVEFIV-EQDGTAYFMEMNT 291


>gi|152981095|ref|YP_001354662.1| biotin carboxylase [Janthinobacterium sp. Marseille]
 gi|151281172|gb|ABR89582.1| biotin carboxylase [Janthinobacterium sp. Marseille]
          Length = 453

 Score = 73.6 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 35/222 (15%), Positives = 79/222 (35%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +      +  +  DK+ +KQ +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAERVEQSGFVFIGPRSDSIRMMGDKVSAKQAMIKAGVPCVPGSEG 136

Query: 112 LVNRFTMD---SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHG 163
            +     +       I  P +IK   GG   G+ V+  + ++   +        S++   
Sbjct: 137 ALPDDAKEIVQIARKIGYPVIIKAAGGGGGRGMRVVHTEAALLNAVTMTKTEAGSAFG-N 195

Query: 164 DQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD 222
            ++ +E+Y++    +   ++ D   +   +            K             IP  
Sbjct: 196 PEVYMEKYLENPRHVEIQILADEHKNAIWLGERDCSMQRRHQKVL----EEAPAPGIPRK 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             + +      A + +G RG    +FL+   + + +++E+N 
Sbjct: 252 TIERIGDRCAEACRKMGYRGAGTFEFLY--ENGEFYFIEMNT 291


>gi|229542903|ref|ZP_04431963.1| Carbamoyl-phosphate synthase L chain ATP-binding [Bacillus
           coagulans 36D1]
 gi|229327323|gb|EEN92998.1| Carbamoyl-phosphate synthase L chain ATP-binding [Bacillus
           coagulans 36D1]
          Length = 451

 Score = 73.6 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 30/220 (13%), Positives = 76/220 (34%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+           + +        A    K+ +++ + + GVPV   +  
Sbjct: 77  AVHPGYGLLSENAPFARKCIEAGLIFIGPSPEIIAAMGSKIEARRTMKAAGVPVIEGVDD 136

Query: 112 --LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
                   + +   I  P ++K   GG  +G+ V++ ++ +         ++  +     
Sbjct: 137 PLADEEAAVRAAEKIGYPAMLKASAGGGGIGMQVVQSEKELRKAFAGNKKRAEMFFGAGA 196

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+Y++    +   ++ D   +V  +   +        K             I     
Sbjct: 197 MFIEKYIEEPHHVEIQILADQYGNVVPLMERECSIQRRHQK----VVEEAPSPFISEATR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +++      A  +IG       + + D   +  ++LE+N 
Sbjct: 253 QKMLDAVVKAATSIGYINAGTIEMIVD-RDQHFYFLEMNT 291


>gi|110834871|ref|YP_693730.1| acetyl-CoA carboxylase, biotin carboxylase [Alcanivorax borkumensis
           SK2]
 gi|110647982|emb|CAL17458.1| acetyl-CoA carboxylase, biotin carboxylase [Alcanivorax borkumensis
           SK2]
          Length = 448

 Score = 73.6 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 75/222 (33%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      +E     +         L  +K+ + + +   GVP  P    
Sbjct: 77  AIHPGYGFLAENADFAESVERSGFTFIGPKADTIRLMGNKVAAIEAMKKAGVPTVPGSNG 136

Query: 114 NRFTMDSQ-----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GD 164
                D         I  P +IK   GG   G+ V+ + + +   +  + S         
Sbjct: 137 PIGDDDEASLAMAEQIGYPVIIKAAAGGGGRGMRVVDEAKQLLNAITLTRSEAKNAFGDA 196

Query: 165 QLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+++     +   V+ D +                 L+          PA  IP  
Sbjct: 197 TVYMEKFLQQPRHVEVQVLADGAGHAI-----HLGDRDCSLQRRHQKVVEEAPAPGIPQH 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +EV      A + I  RG    +FL++      +++E+N 
Sbjct: 252 LKEEVAERCVNACKEINYRGAGTFEFLYENEG--FYFIEMNT 291


>gi|194398207|ref|YP_002037878.1| carbamoyl phosphate synthase large subunit [Streptococcus
           pneumoniae G54]
 gi|226700937|sp|B5E512|CARB_STRP4 RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|194357874|gb|ACF56322.1| carbamoyl-phosphate synthase pyrimidine-specific large chain
           [Streptococcus pneumoniae G54]
          Length = 1058

 Score = 73.6 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 26/228 (11%), Positives = 77/228 (33%), Gaps = 19/228 (8%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--QHLISPPYV 129
           L    +    + +     + D+   +Q +    +P  P          +     I  P +
Sbjct: 646 LAKAGVTILGTQVADLDRAEDRDLFEQALKELDIPQPPGQTATNEEEAALAARKIGFPVL 705

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS--- 186
           ++P        + +++ ++ +   +  +   +    +L++ Y+ G E     + D     
Sbjct: 706 VRPSYVLGGRAMEIVENEEDLRSYMRTAVKASPDHPVLVDSYIVGQECEVDAISDGKNVL 765

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISR 245
           +      + ++  +S        +S  V P + +   + + +          + C G+  
Sbjct: 766 IPGIMEHIERAGVHS-------GDSMAVYPPQTLSQKVQETIADYTKRLAIGLHCLGMMN 818

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
             F+      KV+ +E+N +   T     P ++        ++   ++
Sbjct: 819 IQFVI--KDEKVYVIEVNPRASRT----VPFLSKVTNIPMAQVATKLI 860



 Score = 69.4 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 54/302 (17%), Positives = 115/302 (38%), Gaps = 37/302 (12%)

Query: 20  KACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNVL 58
           +AC S L++ G++V  ++        D+ +                +L   +PD     L
Sbjct: 32  QACLS-LKEEGYEVVLVNSNPATIMTDKEIADKVYIEPITLEFVTRILRKERPDALLPTL 90

Query: 59  HGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
            G  G +  ++     IL+ L +    + + A   + D+   KQ++     P+  S +VN
Sbjct: 91  GGQTGLNMAMELSKNGILDELGVELLGTRLSAIDQAEDRDLFKQLMEELEQPIPESEIVN 150

Query: 115 --RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                +     I  P +++P       G  +   ++ +          +   Q LIE+ +
Sbjct: 151 TVEEAIAFAATIGYPVIVRPAFTLGGTGGGMCANEKELREITENGLKLSPVTQCLIERSI 210

Query: 173 DG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRL 230
            G  E+   VM D++ +   + V   + +   +   + +S    PA+ +     + ++  
Sbjct: 211 AGFKEIEYEVMRDSADNA--LVVCNMENFD-PVGIHTGDSIVFAPAQTMSDYENQMLRDA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    +A+   G        DP S K + +E+N  P ++  S     +   GY   +L  
Sbjct: 268 SLSIIRALKIEGGCNVQLALDPNSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325


>gi|148985175|ref|ZP_01818414.1| carbamoyl phosphate synthase large subunit [Streptococcus
           pneumoniae SP3-BS71]
 gi|147922620|gb|EDK73738.1| carbamoyl phosphate synthase large subunit [Streptococcus
           pneumoniae SP3-BS71]
 gi|301800188|emb|CBW32796.1| carbamoyl-phosphate synthase large chain [Streptococcus pneumoniae
           OXC141]
          Length = 1058

 Score = 73.6 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 26/228 (11%), Positives = 77/228 (33%), Gaps = 19/228 (8%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--QHLISPPYV 129
           L    +    + +     + D+   +Q +    +P  P          +     I  P +
Sbjct: 646 LAKAGVTILGTQVADLDRAEDRDLFEQALKELDIPQPPGQTATNEEEAALAARKIGFPVL 705

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS--- 186
           ++P        + +++ ++ +   +  +   +    +L++ Y+ G E     + D     
Sbjct: 706 VRPSYVLGGRAMEIVENEEDLRSYMRTAVKASPDHPVLVDSYIVGQECEVDAISDGKNVL 765

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISR 245
           +      + ++  +S        +S  V P + +   + + +          + C G+  
Sbjct: 766 IPGIMEHIERAGVHS-------GDSMAVYPPQTLSQKVQETIADYTKRLAIGLHCLGMMN 818

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
             F+      KV+ +E+N +   T     P ++        ++   ++
Sbjct: 819 IQFVI--KDEKVYVIEVNPRASRT----VPFLSKVTNIPMAQVATKLI 860



 Score = 66.3 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 54/302 (17%), Positives = 115/302 (38%), Gaps = 37/302 (12%)

Query: 20  KACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNVL 58
           +AC S L++ G++V  ++        D+ +                +L   +PD     L
Sbjct: 32  QACLS-LKEEGYEVVLVNSNPATIMTDKEIADKVYIEPITLEFVTRILRKERPDALLPTL 90

Query: 59  HGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
            G  G +  ++     IL+ L +    + + A   + D+   KQ++     P+  S +VN
Sbjct: 91  GGQTGLNMAMELSKNGILDELSVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIVN 150

Query: 115 --RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                +     I  P +++P       G  +   ++ +          +   Q LIE+ +
Sbjct: 151 TVEEAVAFAATIGYPVIVRPAFTLGGTGGGMCANEKELREITENGLKLSPVTQCLIERSI 210

Query: 173 DG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRL 230
            G  E+   VM D++ +   + V   + +   +   + +S    PA+ +     + ++  
Sbjct: 211 AGFKEIEYEVMRDSADNA--LVVCNMENFD-PVGIHTGDSIVFAPAQTMSDYENQMLRDA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    +A+   G        DP S K + +E+N  P ++  S     +   GY   +L  
Sbjct: 268 SLSIIRALKIEGGCNVQLALDPNSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325


>gi|329954802|ref|ZP_08295819.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Bacteroides
           clarus YIT 12056]
 gi|328526906|gb|EGF53917.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Bacteroides
           clarus YIT 12056]
          Length = 503

 Score = 73.6 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 42/223 (18%), Positives = 88/223 (39%), Gaps = 23/223 (10%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       +   I +            DK+ +++ + + GVPV P    
Sbjct: 77  AIHPGYGFLSENSEFARRCKEEGIIFIGPSAETMEAMGDKIAARKRMIAAGVPVVPGTEQ 136

Query: 114 NRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
              + +      + I  P ++K   GG   G+ +I K++ +      + S +      D 
Sbjct: 137 PLQSAEEAVRICNEIGYPVMLKASMGGGGKGMRLIHKEEEVVEAYNTARSESMSSFGDDT 196

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK---IPL 221
           + +E++V+    +   ++GD   +V  +       +  E      N   V  +    +  
Sbjct: 197 VYLEKFVEEPHHIEFQILGDNHGNVIHL-------FDRECSVQRRNQKIVEESPSPFLTP 249

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           ++ KE+   A  A +A+   G    +FL D  +R  ++LE+N 
Sbjct: 250 ELRKEMGEKAVAAAKAVNYSGAGTIEFLVDK-NRNFYFLEMNT 291


>gi|317497966|ref|ZP_07956271.1| carbamoyl-phosphate synthase [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316894719|gb|EFV16896.1| carbamoyl-phosphate synthase [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 1077

 Score = 73.6 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 45/276 (16%), Positives = 102/276 (36%), Gaps = 32/276 (11%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL   G+++  +         D +              +  ++A  +PD    
Sbjct: 29  SGTQACKALRKLGYEIVLVNSNPATIMTDPETADETYIEPLNAERLEEIIAKERPDALLP 88

Query: 57  VLHGNFG----EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G  G    E+   + IL+   +      + +     D++  K+ +   G+ +  S +
Sbjct: 89  NLGGQSGLNLCEELYKKGILDKYNVKVIGVQVDSIERGEDRIEFKKTMDELGIEMARSEV 148

Query: 113 VNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     +  P V++P       G  ++   + +   + +    +   Q+L+E+
Sbjct: 149 AYSVEDGLKIADKLGYPVVLRPAYTMGGAGGGLVYNKEELKTVMARGLQASLVGQVLVEE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQ 228
            + G  EL   V+ DA  ++  +   ++      L   + +S    P   I  +  + +Q
Sbjct: 209 SILGWEELELEVVRDAEGNMITVCFIEN---IDPLGVHTGDSFCSAPMLTISEECQQRLQ 265

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             A+    ++   G +   F  DP++ ++  +EIN 
Sbjct: 266 EQAYKIVDSVQVIGGTNVQFAHDPVTDRIIVIEINP 301



 Score = 62.8 bits (152), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 28/201 (13%), Positives = 75/201 (37%), Gaps = 10/201 (4%)

Query: 68  VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLIS 125
           + A LE   +    +      L+ D+   ++++    +P+  S +       ++    I 
Sbjct: 643 IAAELEKNGVKILGTSPSVIDLAEDRDLFREMMDKLEIPMPESGMATTVEEALEIAGKIG 702

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGD 184
            P +++P       G+ V+  D+S+   +  +        +LI+++++  +E     + D
Sbjct: 703 YPVMVRPSYVLGGRGMEVVYDDESMAGYMKAAVGVTPDRPILIDRFLNHAMECEADAISD 762

Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGI 243
            +       +   +           +S  +LP   I  +  + ++       + +  +G+
Sbjct: 763 GTHAFVPAVMEHIELAGVHS----GDSACILPSVHISEENLETIKEYTRKIAEEMHVKGL 818

Query: 244 SRSDFLFDPLSRKVFWLEINV 264
              +  +     KV+ LE N 
Sbjct: 819 --MNMQYAIEDDKVYVLEANP 837


>gi|301794351|emb|CBW36778.1| carbamoyl-phosphate synthase large chain [Streptococcus pneumoniae
           INV104]
 gi|332203124|gb|EGJ17192.1| carbamoyl-phosphate synthase, large subunit [Streptococcus
           pneumoniae GA47901]
          Length = 1058

 Score = 73.6 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 26/228 (11%), Positives = 77/228 (33%), Gaps = 19/228 (8%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--QHLISPPYV 129
           L    +    + +     + D+   +Q +    +P  P          +     I  P +
Sbjct: 646 LAKAGVTILGTQVADLDRAEDRDLFEQALKELDIPQPPGQTATNEEEAALAARKIGFPVL 705

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS--- 186
           ++P        + +++ ++ +   +  +   +    +L++ Y+ G E     + D     
Sbjct: 706 VRPSYVLGGRAMEIVENEEDLRSYMRTAVKASPDHPVLVDSYIVGQECEVDAISDGKNVL 765

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISR 245
           +      + ++  +S        +S  V P + +   + + +          + C G+  
Sbjct: 766 IPGIMEHIERAGVHS-------GDSMAVYPPQTLSQKVQETIADYTKRLAIGLHCLGMMN 818

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
             F+      KV+ +E+N +   T     P ++        ++   ++
Sbjct: 819 IQFVI--KDEKVYVIEVNPRASRT----VPFLSKVTNIPMAQVATKLI 860



 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 54/302 (17%), Positives = 115/302 (38%), Gaps = 37/302 (12%)

Query: 20  KACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNVL 58
           +AC S L++ G++V  ++        D+ +                +L   +PD     L
Sbjct: 32  QACLS-LKEEGYEVVLVNSNPATIMTDKEIADKVYIEPITLEFVTRILRKERPDALLPTL 90

Query: 59  HGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
            G  G +  ++     IL+ L +    + + A   + D+   KQ++     P+  S +VN
Sbjct: 91  GGQTGLNMAMELSKNGILDELGVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIVN 150

Query: 115 --RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                +     I  P +++P       G  +   ++ +          +   Q LIE+ +
Sbjct: 151 TVEEAVAFAATIGYPVIVRPAFTLGGTGGGMCANEKELREITENGLKLSPVTQCLIERSI 210

Query: 173 DG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRL 230
            G  E+   VM D++ +   + V   + +   +   + +S    PA+ +     + ++  
Sbjct: 211 AGFKEIEYEVMRDSADNA--LVVCNMENFD-PVGIHTGDSIVFAPAQTMSDYENQMLRDA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    +A+   G        DP S K + +E+N  P ++  S     +   GY   +L  
Sbjct: 268 SLSIIRALKIEGGCNVQLALDPNSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325


>gi|291560089|emb|CBL38889.1| carbamoyl-phosphate synthase large subunit [butyrate-producing
           bacterium SSC/2]
          Length = 1077

 Score = 73.6 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 45/276 (16%), Positives = 102/276 (36%), Gaps = 32/276 (11%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL   G+++  +         D +              +  ++A  +PD    
Sbjct: 29  SGTQACKALRKLGYEIVLVNSNPATIMTDPETADETYIEPLNAERLEEIIAKERPDALLP 88

Query: 57  VLHGNFG----EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G  G    E+   + IL+   +      + +     D++  K+ +   G+ +  S +
Sbjct: 89  NLGGQSGLNLCEELYKKGILDKYNVKVIGVQVDSIERGEDRIEFKKTMDELGIEMARSEV 148

Query: 113 VNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     +  P V++P       G  ++   + +   + +    +   Q+L+E+
Sbjct: 149 AYSVEDGLKIADKLGYPVVLRPAYTMGGAGGGLVYNKEELKTVMARGLQASLVGQVLVEE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQ 228
            + G  EL   V+ DA  ++  +   ++      L   + +S    P   I  +  + +Q
Sbjct: 209 SILGWEELELEVVRDAEGNMITVCFIEN---IDPLGVHTGDSFCSAPMLTISEECQQRLQ 265

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             A+    ++   G +   F  DP++ ++  +EIN 
Sbjct: 266 EQAYKIVDSVQVIGGTNVQFAHDPVTDRIIVIEINP 301



 Score = 62.8 bits (152), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 28/201 (13%), Positives = 75/201 (37%), Gaps = 10/201 (4%)

Query: 68  VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLIS 125
           + A LE   +    +      L+ D+   ++++    +P+  S +       ++    I 
Sbjct: 643 IAAELEKNGVKILGTSPSVIDLAEDRDLFREMMDKLEIPMPESGMATTVEEALEIAGKIG 702

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGD 184
            P +++P       G+ V+  D+S+   +  +        +LI+++++  +E     + D
Sbjct: 703 YPVMVRPSYVLGGRGMEVVYDDESMAGYMKAAVGVTPDRPILIDRFLNHAMECEADAISD 762

Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGI 243
            +       +   +           +S  +LP   I  +  + ++       + +  +G+
Sbjct: 763 GTHAFVPAVMEHIELAGVHS----GDSACILPSVHISEENLETIKEYTRKIAEEMHVKGL 818

Query: 244 SRSDFLFDPLSRKVFWLEINV 264
              +  +     KV+ LE N 
Sbjct: 819 --MNMQYAIEDDKVYVLEANP 837


>gi|58584712|ref|YP_198285.1| Acetyl/propionyl-CoA carboxylase, alpha subunit [Wolbachia
           endosymbiont strain TRS of Brugia malayi]
 gi|58419028|gb|AAW71043.1| Acetyl/propionyl-CoA carboxylase, alpha subunit [Wolbachia
           endosymbiont strain TRS of Brugia malayi]
          Length = 659

 Score = 73.6 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 32/220 (14%), Positives = 73/220 (33%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      L+   I +         ++ +K+ +K+     GV + P  + 
Sbjct: 81  AVHPGYGFLAENPDFPYALQKYNIDFIGPSAETIEVTANKITAKKAARKAGVNIVPGYMG 140

Query: 114 N----RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
                         I  P ++K   GG   G+ ++   + I L       ++        
Sbjct: 141 KINDAAHAAQVAEEIGFPVMLKAASGGGGKGMRIVNSKKEIELAFTSAKNEAEKSFKDGS 200

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+Y++    +   ++ D   +V  +   +        K             I   + 
Sbjct: 201 IFIEKYIELPRHIEIQIIADKYGNVVCLGERECSVQRNNQKII----EETPSPFISEKVR 256

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +E+        +  G       +F+ D   +  ++LE+N 
Sbjct: 257 QEMYAQCVSLAKQAGYFSAGTIEFVADK-DQNFYFLEVNT 295


>gi|294621300|ref|ZP_06700481.1| phosphoribosylaminoimidazole carboxylase, ATPase subunit
           [Enterococcus faecium U0317]
 gi|314938735|ref|ZP_07846010.1| phosphoribosylaminoimidazole carboxylase, ATPase subunit
           [Enterococcus faecium TX0133a04]
 gi|314941163|ref|ZP_07848060.1| phosphoribosylaminoimidazole carboxylase, ATPase subunit
           [Enterococcus faecium TX0133C]
 gi|314947886|ref|ZP_07851291.1| phosphoribosylaminoimidazole carboxylase, ATPase subunit
           [Enterococcus faecium TX0082]
 gi|314953060|ref|ZP_07856019.1| phosphoribosylaminoimidazole carboxylase, ATPase subunit
           [Enterococcus faecium TX0133A]
 gi|314993311|ref|ZP_07858682.1| phosphoribosylaminoimidazole carboxylase, ATPase subunit
           [Enterococcus faecium TX0133B]
 gi|314997626|ref|ZP_07862557.1| phosphoribosylaminoimidazole carboxylase, ATPase subunit
           [Enterococcus faecium TX0133a01]
 gi|291599138|gb|EFF30174.1| phosphoribosylaminoimidazole carboxylase, ATPase subunit
           [Enterococcus faecium U0317]
 gi|313588343|gb|EFR67188.1| phosphoribosylaminoimidazole carboxylase, ATPase subunit
           [Enterococcus faecium TX0133a01]
 gi|313592213|gb|EFR71058.1| phosphoribosylaminoimidazole carboxylase, ATPase subunit
           [Enterococcus faecium TX0133B]
 gi|313594862|gb|EFR73707.1| phosphoribosylaminoimidazole carboxylase, ATPase subunit
           [Enterococcus faecium TX0133A]
 gi|313600023|gb|EFR78866.1| phosphoribosylaminoimidazole carboxylase, ATPase subunit
           [Enterococcus faecium TX0133C]
 gi|313641948|gb|EFS06528.1| phosphoribosylaminoimidazole carboxylase, ATPase subunit
           [Enterococcus faecium TX0133a04]
 gi|313645655|gb|EFS10235.1| phosphoribosylaminoimidazole carboxylase, ATPase subunit
           [Enterococcus faecium TX0082]
          Length = 377

 Score = 73.6 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 37/207 (17%), Positives = 85/207 (41%), Gaps = 15/207 (7%)

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTMDSQ 121
           E+  V+A+  +L + +   G    A++ D++  K  + +  + + P   +       D+ 
Sbjct: 81  ENVSVEALNAILPMSFIPQGTDLLAITQDRLLEKSFLETNNIVIAPYATIVSPTDIQDAI 140

Query: 122 HLISPPYVIKPLKGG-SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTC 179
             I  P V+K  +GG    G  V+K    +   +            ++E ++    E++ 
Sbjct: 141 DGIGYPCVLKTTRGGYDGKGQYVLKSRADLAPAMDL----LREGTCVLEAWIPFEKEISI 196

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
            V G+   D T   V ++        ++++    + PA I  D+ +E +R+A +  +A+ 
Sbjct: 197 MVAGNGQGDFTTFPVVENIH------HNNILHETIAPAAIDQDVIEEAERIARVIAEAVS 250

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQP 266
             G+   +         ++  E+  +P
Sbjct: 251 LSGVLGVEMFLTKTGG-LYVNELAPRP 276


>gi|195426988|ref|XP_002061562.1| GK20962 [Drosophila willistoni]
 gi|194157647|gb|EDW72548.1| GK20962 [Drosophila willistoni]
          Length = 1197

 Score = 73.6 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 32/205 (15%), Positives = 78/205 (38%), Gaps = 17/205 (8%)

Query: 69  QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLI 124
           QA+++   + +            DK+ ++      GVP+ P     +      +D     
Sbjct: 131 QAVID-AGLRFIGPSPKVVQNMGDKVAARVAAIEAGVPIVPGTDGPVTTKEEALDFCKKH 189

Query: 125 SPPYVIKPLKGGSSLGIIVI----KKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTC 179
             P + K   GG   G+ V+    + ++S      ++ +      + IE++++    +  
Sbjct: 190 GLPVIFKAAYGGGGRGMRVVRKMEEVEESFQRASSEAKAAFGNGAMFIEKFIERPRHIEV 249

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAI 238
            ++GD + +V  +           ++        + PA ++P +I  ++   A    + +
Sbjct: 250 QLLGDKAGNVVHLYE-----RDCSVQRRHQKVVEIAPAPRLPTEIRDKMTEAAVRLARHV 304

Query: 239 GCRGISRSDFLFDPLSRKVFWLEIN 263
           G       +FL D      +++E+N
Sbjct: 305 GYENAGTVEFLADESGN-FYFIEVN 328


>gi|169832659|ref|YP_001694700.1| carbamoyl phosphate synthase large subunit [Streptococcus
           pneumoniae Hungary19A-6]
 gi|226700938|sp|B1IC65|CARB_STRPI RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|168995161|gb|ACA35773.1| carbamoyl-phosphate synthase, large subunit [Streptococcus
           pneumoniae Hungary19A-6]
          Length = 1058

 Score = 73.6 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 26/228 (11%), Positives = 77/228 (33%), Gaps = 19/228 (8%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--QHLISPPYV 129
           L    +    + +     + D+   +Q +    +P  P          +     I  P +
Sbjct: 646 LAKAGVTILGTQVADLDRAEDRDLFEQALKELDIPQPPGQTATNEEEAALAARKIGFPVL 705

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS--- 186
           ++P        + +++ ++ +   +  +   +    +L++ Y+ G E     + D     
Sbjct: 706 VRPSYVLGGRAMEIVENEEDLRSYMRTAVKASPDHPVLVDSYIVGQECEVDAISDGKNVL 765

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISR 245
           +      + ++  +S        +S  V P + +   + + +          + C G+  
Sbjct: 766 IPGIMEHIERAGVHS-------GDSMAVYPPQTLSQKVQETIADYTKRLAIGLHCLGMMN 818

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
             F+      KV+ +E+N +   T     P ++        ++   ++
Sbjct: 819 IQFVI--KDEKVYVIEVNPRASRT----VPFLSKVTNIPMAQVATKLI 860



 Score = 71.7 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 54/302 (17%), Positives = 116/302 (38%), Gaps = 37/302 (12%)

Query: 20  KACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNVL 58
           +AC S L++ G++V  ++        D+ +                +L   +PD     L
Sbjct: 32  QACLS-LKEEGYEVVLVNSNPATIMTDKEIADKVYIEPITLEFVTRILRKERPDALLPTL 90

Query: 59  HGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
            G  G +  ++     IL+ L + +  + + A   + D+   KQ++     P+  S +VN
Sbjct: 91  GGQTGLNMAMELSKNGILDELGVEFLGTRLSAIDQAEDRDLFKQLMEELEQPIPESEIVN 150

Query: 115 --RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                +     I  P +++P       G  +   ++ +          +   Q LIE+ +
Sbjct: 151 TVEEAIAFAATIGYPVIVRPAFTLGGTGGGMCANEKELREITENGLKLSPVTQCLIERSI 210

Query: 173 DG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRL 230
            G  E+   VM D++ +   + V   + +   +   + +S    PA+ +     + ++  
Sbjct: 211 AGFKEIEYEVMRDSADNA--LVVCNMENFD-PVGIHTGDSIVFAPAQTMSDYENQMLRDA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    +A+   G        DP S K + +E+N  P ++  S     +   GY   +L  
Sbjct: 268 SLSIIRALKIEGGCNVQLALDPNSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325


>gi|168491194|ref|ZP_02715337.1| carbamoyl-phosphate synthase, large subunit [Streptococcus
           pneumoniae CDC0288-04]
 gi|183574365|gb|EDT94893.1| carbamoyl-phosphate synthase, large subunit [Streptococcus
           pneumoniae CDC0288-04]
          Length = 1058

 Score = 73.6 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 26/228 (11%), Positives = 77/228 (33%), Gaps = 19/228 (8%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--QHLISPPYV 129
           L    +    + +     + D+   +Q +    +P  P          +     I  P +
Sbjct: 646 LAKAGVTILGTQVADLDRAEDRDLFEQALKELDIPQPPGQTATNEEEAALAARKIGFPVL 705

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS--- 186
           ++P        + +++ ++ +   +  +   +    +L++ Y+ G E     + D     
Sbjct: 706 VRPSYVLGGRAMEIVENEEDLRSYMRTAVKASPDHPVLVDSYIVGQECEVDAISDGKNVL 765

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISR 245
           +      + ++  +S        +S  V P + +   + + +          + C G+  
Sbjct: 766 IPGIMEHIERAGVHS-------GDSMAVYPPQTLSQKVQETIADYTKRLAIGLHCLGMMN 818

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
             F+      KV+ +E+N +   T     P ++        ++   ++
Sbjct: 819 IQFVI--KDEKVYVIEVNPRASRT----VPFLSKVTNIPMAQVATKLI 860



 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 54/302 (17%), Positives = 115/302 (38%), Gaps = 37/302 (12%)

Query: 20  KACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNVL 58
           +AC S L++ G++V  ++        D+ +                +L   +PD     L
Sbjct: 32  QACLS-LKEEGYEVVLVNSNPATIMTDKEIADKVYIEPITLEFVTRILRKERPDALLPTL 90

Query: 59  HGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
            G  G +  ++     IL+ L +    + + A   + D+   KQ++     P+  S +VN
Sbjct: 91  GGQTGLNMAMELSKNGILDELGVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIVN 150

Query: 115 --RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                +     I  P +++P       G  +   ++ +          +   Q LIE+ +
Sbjct: 151 TVEEAVAFAATIGYPVIVRPAFTLGGTGGGMCANEKELREITENGLKLSPVTQCLIERSI 210

Query: 173 DG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRL 230
            G  E+   VM D++ +   + V   + +   +   + +S    PA+ +     + ++  
Sbjct: 211 AGFKEIEYEVMRDSADNA--LVVCNMENFD-PVGIHTGDSIVFAPAQTMSDYENQMLRDA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    +A+   G        DP S K + +E+N  P ++  S     +   GY   +L  
Sbjct: 268 SLSIIRALKIEGGCNVQLALDPNSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325


>gi|145590554|ref|YP_001152556.1| lysine biosynthesis enzyme LysX [Pyrobaculum arsenaticum DSM 13514]
 gi|145282322|gb|ABP49904.1| L-2-aminoadipate N-acetyltransferase [Pyrobaculum arsenaticum DSM
           13514]
          Length = 302

 Score = 73.6 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 36/183 (19%), Positives = 73/183 (39%), Gaps = 18/183 (9%)

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILV--NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           +S DK  +   +   GVP   + LV            ++ P ++KP  G     + ++K 
Sbjct: 106 ISHDKYLTYLKLREVGVPTPETYLVFSREAARAVAEKLAYPVIVKPTDGSWGRLVNLVKS 165

Query: 147 DQSIPLDLLQSSSWNHGDQL-LIEQYV--DGIELTCGVMGDASLDVTEIAVPKSDFYSYE 203
           ++ +   L    + +    L L++QY+   G ++   V+GD ++      + + D+ +  
Sbjct: 166 EEDLSTLLAHRLAMDSQMHLFLVQQYINKPGRDIRVTVVGDRAVAAI-YRISQGDWRTNT 224

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            +          P KI  ++ +    +A  A +A+G    S  D       R    +E+N
Sbjct: 225 ARGGRAE-----PVKIDPELEE----IAVKASKAVGAF-YSGVD--VAESERGYLVIEVN 272

Query: 264 VQP 266
             P
Sbjct: 273 GVP 275


>gi|69246325|ref|ZP_00603898.1| Phosphoribosylaminoimidazole carboxylase, ATPase subunit
           [Enterococcus faecium DO]
 gi|257878084|ref|ZP_05657737.1| phosphoribosylaminoimidazole carboxylase [Enterococcus faecium
           1,230,933]
 gi|257889717|ref|ZP_05669370.1| phosphoribosylaminoimidazole carboxylase [Enterococcus faecium
           1,231,410]
 gi|257892344|ref|ZP_05671997.1| phosphoribosylaminoimidazole carboxylase [Enterococcus faecium
           1,231,408]
 gi|260559134|ref|ZP_05831320.1| phosphoribosylaminoimidazole carboxylase [Enterococcus faecium C68]
 gi|293563736|ref|ZP_06678176.1| phosphoribosylaminoimidazole carboxylase, ATPase subunit
           [Enterococcus faecium E1162]
 gi|293569365|ref|ZP_06680662.1| phosphoribosylaminoimidazole carboxylase, ATPase subunit
           [Enterococcus faecium E1071]
 gi|68195339|gb|EAN09789.1| Phosphoribosylaminoimidazole carboxylase, ATPase subunit
           [Enterococcus faecium DO]
 gi|257812312|gb|EEV41070.1| phosphoribosylaminoimidazole carboxylase [Enterococcus faecium
           1,230,933]
 gi|257826077|gb|EEV52703.1| phosphoribosylaminoimidazole carboxylase [Enterococcus faecium
           1,231,410]
 gi|257828723|gb|EEV55330.1| phosphoribosylaminoimidazole carboxylase [Enterococcus faecium
           1,231,408]
 gi|260074891|gb|EEW63207.1| phosphoribosylaminoimidazole carboxylase [Enterococcus faecium C68]
 gi|291587891|gb|EFF19742.1| phosphoribosylaminoimidazole carboxylase, ATPase subunit
           [Enterococcus faecium E1071]
 gi|291604314|gb|EFF33808.1| phosphoribosylaminoimidazole carboxylase, ATPase subunit
           [Enterococcus faecium E1162]
          Length = 374

 Score = 73.6 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 37/207 (17%), Positives = 85/207 (41%), Gaps = 15/207 (7%)

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTMDSQ 121
           E+  V+A+  +L + +   G    A++ D++  K  + +  + + P   +       D+ 
Sbjct: 78  ENVSVEALNAILPMSFIPQGTDLLAITQDRLLEKSFLETNNIVIAPYATIVSPTDIQDAI 137

Query: 122 HLISPPYVIKPLKGG-SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTC 179
             I  P V+K  +GG    G  V+K    +   +            ++E ++    E++ 
Sbjct: 138 DGIGYPCVLKTTRGGYDGKGQYVLKSRADLAPAMDL----LREGTCVLEAWIPFEKEISI 193

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
            V G+   D T   V ++        ++++    + PA I  D+ +E +R+A +  +A+ 
Sbjct: 194 MVAGNGQGDFTTFPVVENIH------HNNILHETIAPAAIDQDVIEEAERIARVIAEAVS 247

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQP 266
             G+   +         ++  E+  +P
Sbjct: 248 LSGVLGVEMFLTKTGG-LYVNELAPRP 273


>gi|321253258|ref|XP_003192680.1| methylcrotonoyl-Coenzyme A carboxylase 1 [Cryptococcus gattii
           WM276]
 gi|317459149|gb|ADV20893.1| Methylcrotonoyl-Coenzyme A carboxylase 1, putative [Cryptococcus
           gattii WM276]
          Length = 734

 Score = 73.6 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 44/253 (17%), Positives = 87/253 (34%), Gaps = 27/253 (10%)

Query: 32  KVSQIDVDRSVGLVLAHLKP-DLAFN----VLHGNFG---EDGLVQAILELLEIPYTHSG 83
           +   I    S    L   K  D+A       +H  +G   E       +    + +    
Sbjct: 115 EAYLIGPSPSSESYLKMDKILDIAKLTGAEAIHPGYGFLSESSDFAEKVRDAGLIFIGPS 174

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI------SPPYVIKPLKGGS 137
             A      K  SK+++ + GVP  P    +        L+        P +IKP  GG 
Sbjct: 175 AEAIKSMGSKRESKEIMVAAGVPCVPGY--HGADQSQAALLKGSQQTGYPLIIKPTHGGG 232

Query: 138 SLGIIVIKKD----QSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEI 192
             G+ +++        +     ++      D++L+E++++    +   V GD   +   +
Sbjct: 233 GKGMRIVRDPSTLQDELLSAQREALKSFGNDEVLLERWLEKPRHVEVQVFGDHFGNCVAL 292

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
                      ++          PA  +   + K     A  A +AI   G    +F+ D
Sbjct: 293 WE-----RDCSVQRRHQKIIEEAPAPGLSPALKKGFAEKAVAAAKAINYVGAGTVEFIMD 347

Query: 252 PLSRKVFWLEINV 264
             + + F++E+N 
Sbjct: 348 AETGEHFFMEMNT 360


>gi|317503677|ref|ZP_07961694.1| phosphoribosylglycinamide formyltransferase 2 [Prevotella salivae
           DSM 15606]
 gi|315665198|gb|EFV04848.1| phosphoribosylglycinamide formyltransferase 2 [Prevotella salivae
           DSM 15606]
          Length = 387

 Score = 73.6 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 41/244 (16%), Positives = 78/244 (31%), Gaps = 25/244 (10%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGE---DGLVQAILELLEIPYTHSGILASALSMD 92
           +D D ++   +    PD+    +     E   D       E   I    S    +     
Sbjct: 52  LDGD-ALAAAVEKHCPDIIVPEIEAIRTERLFD------FEQRGIQVVPSAKAVNFTMNR 104

Query: 93  KMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150
           +          G+          F     +   I  P V+KPL   S  G   +  D  +
Sbjct: 105 RAIRDLASRELGLRTAKYYYAKTFVEFKQAADEIGFPCVVKPLMSSSGHGQSYVHNDNEL 164

Query: 151 PLDLLQSSSWNHGD--QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYS 207
                ++     GD  +++IE+++D   E T   +   +                 ++ S
Sbjct: 165 QAAFHEAMEEGRGDVKEVIIEEFIDFDSEFTLLTVTQKNAPTIFCPPIG------HVQKS 218

Query: 208 SLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP- 266
                   P  +P +   + Q +A    +A+   GI   +F       +V + E++ +P 
Sbjct: 219 GDYRESWQPFCLPDEALSQAQHMANEVTKALEGYGIWGVEFFLTKQ-GEVIFSELSPRPH 277

Query: 267 --GM 268
             GM
Sbjct: 278 DTGM 281


>gi|288800049|ref|ZP_06405508.1| phosphoribosylglycinamide formyltransferase 3 [Prevotella sp. oral
           taxon 299 str. F0039]
 gi|288333297|gb|EFC71776.1| phosphoribosylglycinamide formyltransferase 3 [Prevotella sp. oral
           taxon 299 str. F0039]
          Length = 386

 Score = 73.6 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 35/204 (17%), Positives = 75/204 (36%), Gaps = 26/204 (12%)

Query: 81  HSGILASALSMD-----KMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYVIKPL 133
              ++ SA +++     K          G+           +    +   I  P V+KPL
Sbjct: 87  GIQVVPSAKAVNFTMNRKAIRDLAAKELGIRTAHYYYATTLSELETAAEKIGFPCVVKPL 146

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD--QLLIEQYVDGIE----LTCGVMGDASL 187
              S  G  V++  + + +   ++   + GD  ++++E++++       LT       +L
Sbjct: 147 MSSSGHGQSVVRSKEGLQVAFKEAIEGSRGDVKEIIVEEFIEFDSEFTLLTVTQKNGETL 206

Query: 188 DVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
               I   + D   Y   +         P  +P +  K+ Q +A     A+   G+   +
Sbjct: 207 YCPPIGHIQKDG-DYRESW--------QPFALPEEALKQAQEMAKKVTNALTGAGLWGVE 257

Query: 248 FLFDPLSRKVFWLEINVQP---GM 268
           F       +V + E++ +P   GM
Sbjct: 258 FFLTTK-NEVIFSELSPRPHDTGM 280


>gi|213419729|ref|ZP_03352795.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Typhi str. E01-6750]
          Length = 53

 Score = 73.6 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 12/38 (31%), Positives = 23/38 (60%)

Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             EIN  PG T +S++P++   +G  + +L+  ++E A
Sbjct: 2   INEINTLPGFTNISMYPKLWQASGLGYTDLISRLIELA 39


>gi|168575730|ref|ZP_02721645.1| carbamoyl-phosphate synthase, large subunit [Streptococcus
           pneumoniae MLV-016]
 gi|183578166|gb|EDT98694.1| carbamoyl-phosphate synthase, large subunit [Streptococcus
           pneumoniae MLV-016]
          Length = 1058

 Score = 73.6 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 26/228 (11%), Positives = 77/228 (33%), Gaps = 19/228 (8%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--QHLISPPYV 129
           L    +    + +     + D+   +Q +    +P  P          +     I  P +
Sbjct: 646 LAKAGVTILGTQVADLDRAEDRDLFEQALKELDIPQPPGQTATNEEEAALAARKIGFPVL 705

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS--- 186
           ++P        + +++ ++ +   +  +   +    +L++ Y+ G E     + D     
Sbjct: 706 VRPSYVLGGRAMEIVENEEDLRSYMRTAVKASPDHPVLVDSYIVGQECEVDAISDGKNVL 765

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISR 245
           +      + ++  +S        +S  V P + +   + + +          + C G+  
Sbjct: 766 IPGIMEHIERAGVHS-------GDSMAVYPPQTLSQKVQETIADYTKRLAIGLHCLGMMN 818

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
             F+      KV+ +E+N +   T     P ++        ++   ++
Sbjct: 819 IQFVI--KDEKVYVIEVNPRASRT----VPFLSKVTNIPMAQVATKLI 860



 Score = 69.4 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 54/302 (17%), Positives = 115/302 (38%), Gaps = 37/302 (12%)

Query: 20  KACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNVL 58
           +AC S L++ G++V  ++        D+ +                +L   +PD     L
Sbjct: 32  QACLS-LKEEGYEVVLVNSNPATIMTDKEIADKVYIEPITLEFVTRILRKERPDALLPTL 90

Query: 59  HGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
            G  G +  ++     IL+ L +    + + A   + D+   KQ++     P+  S +VN
Sbjct: 91  GGQTGLNMAMELSKNGILDELGVELLGTRLSAIDQAEDRDLFKQLMEELEQPIPESEIVN 150

Query: 115 --RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                +     I  P +++P       G  +   ++ +          +   Q LIE+ +
Sbjct: 151 TVEEAIAFAATIGYPVIVRPAFTLGGTGGGMCANEKELREITENGLKLSPVTQCLIERSI 210

Query: 173 DG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRL 230
            G  E+   VM D++ +   + V   + +   +   + +S    PA+ +     + ++  
Sbjct: 211 AGFKEIEYEVMRDSADNA--LVVCNMENFD-PVGIHTGDSIVFAPAQTMSDYENQMLRDA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    +A+   G        DP S K + +E+N  P ++  S     +   GY   +L  
Sbjct: 268 SLSIIRALKIEGGCNVQLALDPNSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325


>gi|167766145|ref|ZP_02438198.1| hypothetical protein CLOSS21_00639 [Clostridium sp. SS2/1]
 gi|167712225|gb|EDS22804.1| hypothetical protein CLOSS21_00639 [Clostridium sp. SS2/1]
          Length = 1077

 Score = 73.6 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 45/276 (16%), Positives = 102/276 (36%), Gaps = 32/276 (11%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL   G+++  +         D +              +  ++A  +PD    
Sbjct: 29  SGTQACKALRKLGYEIVLVNSNPATIMTDPETADETYIEPLNAERLEEIIAKERPDALLP 88

Query: 57  VLHGNFG----EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G  G    E+   + IL+   +      + +     D++  K+ +   G+ +  S +
Sbjct: 89  NLGGQSGLNLCEELYKKGILDKYNVKVIGVQVDSIERGEDRIEFKKTMDELGIEMARSEV 148

Query: 113 VNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     +  P V++P       G  ++   + +   + +    +   Q+L+E+
Sbjct: 149 AYSVEDGLKIADKLGYPVVLRPAYTMGGAGGGLVYNKEELKTVMARGLQASLVGQVLVEE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQ 228
            + G  EL   V+ DA  ++  +   ++      L   + +S    P   I  +  + +Q
Sbjct: 209 SILGWEELELEVVRDAEGNMITVCFIEN---IDPLGVHTGDSFCSAPMLTISEECQQRLQ 265

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             A+    ++   G +   F  DP++ ++  +EIN 
Sbjct: 266 EQAYKIVDSVQVIGGTNVQFAHDPVTDRIIVIEINP 301



 Score = 62.8 bits (152), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 28/201 (13%), Positives = 75/201 (37%), Gaps = 10/201 (4%)

Query: 68  VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLIS 125
           + A LE   +    +      L+ D+   ++++    +P+  S +       ++    I 
Sbjct: 643 IAAELEKNGVKILGTSPSVIDLAEDRDLFREMMDKLEIPMPESGMATTVEEALEIAGKIG 702

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGD 184
            P +++P       G+ V+  D+S+   +  +        +LI+++++  +E     + D
Sbjct: 703 YPVMVRPSYVLGGRGMEVVYDDESMAGYMKAAVGVTPDRPILIDRFLNHAMECEADAISD 762

Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGI 243
            +       +   +           +S  +LP   I  +  + ++       + +  +G+
Sbjct: 763 GTHAFVPAVMEHIELAGVHS----GDSACILPSVHISEENLETIKEYTRKIAEEMHVKGL 818

Query: 244 SRSDFLFDPLSRKVFWLEINV 264
              +  +     KV+ LE N 
Sbjct: 819 --MNMQYAIEDDKVYVLEANP 837


>gi|332074887|gb|EGI85359.1| carbamoyl-phosphate synthase, large subunit [Streptococcus
           pneumoniae GA41301]
          Length = 1058

 Score = 73.6 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 26/228 (11%), Positives = 77/228 (33%), Gaps = 19/228 (8%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--QHLISPPYV 129
           L    +    + +     + D+   +Q +    +P  P          +     I  P +
Sbjct: 646 LAKAGVTILGTQVADLDRAEDRDLFEQALKELDIPQPPGQTATNEEEAALAARKIGFPVL 705

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS--- 186
           ++P        + +++ ++ +   +  +   +    +L++ Y+ G E     + D     
Sbjct: 706 VRPSYVLGGRAMEIVENEEDLRSYMRTAVKASPDHPVLVDSYIVGQECEVDAISDGKNVL 765

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISR 245
           +      + ++  +S        +S  V P + +   + + +          + C G+  
Sbjct: 766 IPGIMEHIERAGVHS-------GDSMAVYPPQTLSQKVQETIADYTKRLAIGLHCLGMMN 818

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
             F+      KV+ +E+N +   T     P ++        ++   ++
Sbjct: 819 IQFVI--KDEKVYVIEVNPRASRT----VPFLSKVTNIPMAQVATKLI 860



 Score = 68.6 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 54/302 (17%), Positives = 114/302 (37%), Gaps = 37/302 (12%)

Query: 20  KACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNVL 58
           +AC S L++ G++V  ++        D+ +                +L    PD     L
Sbjct: 32  QACLS-LKEEGYEVVLVNSNPATIMTDKEIADKVYIEPITLEFVTRILRKEGPDALLPTL 90

Query: 59  HGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
            G  G +  ++     IL+ L +    + + A   + D+   KQ++     P+  S +VN
Sbjct: 91  GGQTGLNMAMELSKNGILDELGVELLGTRLSAIDQAEDRDLFKQLMEELEQPIPESEIVN 150

Query: 115 --RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                +     I  P +++P       G  +   ++ +          +   Q LIE+ +
Sbjct: 151 TVEEAIAFAATIGYPVIVRPAFTLGGTGGGMCANEKELREITENGLKLSPVTQCLIERSI 210

Query: 173 DG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRL 230
            G  E+   VM D++ +   + V   + +   +   + +S    PA+ +     + ++  
Sbjct: 211 AGFKEIEYEVMRDSADNA--LVVCNMENFD-PVGIHTGDSIVFAPAQTMSDYENQMLRDA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    +A+   G        DP S K + +E+N  P ++  S     +   GY   +L  
Sbjct: 268 SLSIIRALKIEGGCNVQLALDPNSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325


>gi|168489101|ref|ZP_02713300.1| carbamoyl-phosphate synthase, large subunit [Streptococcus
           pneumoniae SP195]
 gi|183572511|gb|EDT93039.1| carbamoyl-phosphate synthase, large subunit [Streptococcus
           pneumoniae SP195]
          Length = 1058

 Score = 73.6 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 26/228 (11%), Positives = 77/228 (33%), Gaps = 19/228 (8%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--QHLISPPYV 129
           L    +    + +     + D+   +Q +    +P  P          +     I  P +
Sbjct: 646 LAKAGVTILGTQVADLDRAEDRDLFEQALKELDIPQPPGQTATNEEEAALAARKIGFPVL 705

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS--- 186
           ++P        + +++ ++ +   +  +   +    +L++ Y+ G E     + D     
Sbjct: 706 VRPSYVLGGRAMEIVENEEDLRSYMRTAVKASPDHPVLVDSYIVGQECEVDAISDGKNVL 765

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISR 245
           +      + ++  +S        +S  V P + +   + + +          + C G+  
Sbjct: 766 IPGIMEHIERAGVHS-------GDSMAVYPPQTLSQKVQETIADYTKRLAIGLHCLGMMN 818

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
             F+      KV+ +E+N +   T     P ++        ++   ++
Sbjct: 819 IQFVI--KDEKVYVIEVNPRASRT----VPFLSKVTNIPMAQVATKLI 860



 Score = 67.5 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 54/302 (17%), Positives = 114/302 (37%), Gaps = 37/302 (12%)

Query: 20  KACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNVL 58
           +AC S L++ G++V  ++        D+ +                +L    PD     L
Sbjct: 32  QACLS-LKEEGYEVVLVNSNPATIMTDKEIADKVYIEPITLEFVTRILRKEGPDALLPTL 90

Query: 59  HGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
            G  G +  ++     IL+ L +    + + A   + D+   KQ++     P+  S +VN
Sbjct: 91  GGQTGLNMAMELSKNGILDELGVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIVN 150

Query: 115 --RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                +     I  P +++P       G  +   ++ +          +   Q LIE+ +
Sbjct: 151 TVEEAVAFAATIGYPVIVRPAFTLGGTGGGMCANEKELREITENGLKLSPVTQCLIERSI 210

Query: 173 DG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRL 230
            G  E+   VM D++ +   + V   + +   +   + +S    PA+ +     + ++  
Sbjct: 211 AGFKEIEYEVMRDSADNA--LVVCNMENFD-PVGIHTGDSIVFAPAQTMSDYENQMLRDA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    +A+   G        DP S K + +E+N  P ++  S     +   GY   +L  
Sbjct: 268 SLSIIRALKIEGGCNVQLALDPNSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325


>gi|168484509|ref|ZP_02709461.1| carbamoyl-phosphate synthase, large subunit [Streptococcus
           pneumoniae CDC1873-00]
 gi|172042246|gb|EDT50292.1| carbamoyl-phosphate synthase, large subunit [Streptococcus
           pneumoniae CDC1873-00]
 gi|332201739|gb|EGJ15809.1| carbamoyl-phosphate synthase, large subunit [Streptococcus
           pneumoniae GA47368]
          Length = 1058

 Score = 73.6 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 26/228 (11%), Positives = 77/228 (33%), Gaps = 19/228 (8%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--QHLISPPYV 129
           L    +    + +     + D+   +Q +    +P  P          +     I  P +
Sbjct: 646 LAKAGVTILGTQVADLDRAEDRDLFEQALKELDIPQPPGQTATNEEEAALAARKIGFPVL 705

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS--- 186
           ++P        + +++ ++ +   +  +   +    +L++ Y+ G E     + D     
Sbjct: 706 VRPSYVLGGRAMEIVENEEDLRSYMRTAVKASPDHPVLVDSYIVGQECEVDAISDGKNVL 765

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISR 245
           +      + ++  +S        +S  V P + +   + + +          + C G+  
Sbjct: 766 IPGIMEHIERAGVHS-------GDSMAVYPPQTLSQKVQETIADYTKRLAIGLHCLGMMN 818

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
             F+      KV+ +E+N +   T     P ++        ++   ++
Sbjct: 819 IQFVI--KDEKVYVIEVNPRASRT----VPFLSKVTNIPMAQVATKLI 860



 Score = 67.5 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 54/302 (17%), Positives = 114/302 (37%), Gaps = 37/302 (12%)

Query: 20  KACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNVL 58
           +AC S L++ G++V  ++        D+ +                +L    PD     L
Sbjct: 32  QACLS-LKEEGYEVVLVNSNPATIMTDKEIADKVYIEPITLEFVTRILRKEGPDALLPTL 90

Query: 59  HGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
            G  G +  ++     IL+ L +    + + A   + D+   KQ++     P+  S +VN
Sbjct: 91  GGQTGLNMAMELSKNGILDELGVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIVN 150

Query: 115 --RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                +     I  P +++P       G  +   ++ +          +   Q LIE+ +
Sbjct: 151 TVEEAVAFAATIGYPVIVRPAFTLGGTGGGMCANEKELREITENGLKLSPVTQCLIERSI 210

Query: 173 DG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRL 230
            G  E+   VM D++ +   + V   + +   +   + +S    PA+ +     + ++  
Sbjct: 211 AGFKEIEYEVMRDSADNA--LVVCNMENFD-PVGIHTGDSIVFAPAQTMSDYENQMLRDA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    +A+   G        DP S K + +E+N  P ++  S     +   GY   +L  
Sbjct: 268 SLSIIRALKIEGGCNVQLALDPNSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325


>gi|31792162|ref|NP_854655.1| acetyl-/propionyl-coenzyme A carboxylase subunit alpha
           [Mycobacterium bovis AF2122/97]
 gi|121636899|ref|YP_977122.1| putative acetyl-/propionyl-coenzyme A carboxylase alpha chain
           subunit alpha accA2 [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|224989370|ref|YP_002644057.1| putative acetyl-/propionyl-coenzyme A carboxylase alpha chain
           subunit alpha [Mycobacterium bovis BCG str. Tokyo 172]
 gi|31617750|emb|CAD93859.1| PROBABLE ACETYL-/PROPIONYL-COENZYME A CARBOXYLASE ALPHA CHAIN
           (ALPHA SUBUNIT) ACCA2: BIOTIN CARBOXYLASE + BIOTIN
           CARBOXYL CARRIER PROTEIN (BCCP) [Mycobacterium bovis
           AF2122/97]
 gi|121492546|emb|CAL71014.1| Probable acetyl-/propionyl-coenzyme A carboxylase alpha chain
           (alpha subunit) accA2 [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|224772483|dbj|BAH25289.1| putative acetyl-/propionyl-coenzyme A carboxylase alpha chain
           subunit alpha [Mycobacterium bovis BCG str. Tokyo 172]
          Length = 667

 Score = 73.6 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 42/217 (19%), Positives = 83/217 (38%), Gaps = 21/217 (9%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
           +G   E+    A ++   + +    + A      K+ SK+++++ GVPV     +     
Sbjct: 80  YGFLSENAEFAAAVQEAGLTWVGPPVDAVRAMGSKIESKKLMAAAGVPV-----LEELDP 134

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQLLIEQYV-D 173
           D+      P ++K   GG   G+ V+ +  ++P ++  +            +  E+Y+  
Sbjct: 135 DAVTTAQLPVLVKASAGGGGRGMRVVHELSALPAEVEAARREAQSAFGDPTVFCERYLPT 194

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI---YKEVQRL 230
           G  +   VM D    V  +   +  F     K          P+ +   +     ++   
Sbjct: 195 GHHVEVQVMADTHGTVWAVGERECSFQRRHQK-----IIEEAPSPLVERVPGMRAKLFDA 249

Query: 231 AFLAHQAIGCRGISRSDFLFDPL---SRKVFWLEINV 264
           A LA  AIG  G    +FL D       + ++LE+N 
Sbjct: 250 ARLAASAIGYTGAGTVEFLADDSPGREGEFYFLEMNT 286


>gi|328957605|ref|YP_004374991.1| biotin carboxylase [Carnobacterium sp. 17-4]
 gi|328673929|gb|AEB29975.1| biotin carboxylase [Carnobacterium sp. 17-4]
          Length = 455

 Score = 73.6 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 33/221 (14%), Positives = 81/221 (36%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---- 109
            +H  FG   E+     + + + + +     +      +K  ++ ++    VPV P    
Sbjct: 77  AIHPGFGFLSENSTFATMCKEMNVTFIGPDAVTIDQMGNKANARALMIEANVPVIPGSEG 136

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGDQ 165
            I            +  P ++K   GG   G+  + + + +         ++ +    DQ
Sbjct: 137 FITDTNEAKQLADQLGYPVMVKAAAGGGGKGMRKVLRTEDLTAAFNSAKNEAKAAFGDDQ 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDI 223
           + +E+ ++    +   ++GD   +V              L+ ++       P   I  + 
Sbjct: 197 MYMEKIIEHARHIEVQLLGDHYGNVI-----HLGERDCSLQRNNQKVIEESPSVAINEEQ 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            K +   A  A + +G +     +FL D  + + +++E+N 
Sbjct: 252 RKNLGETAIRAAKYVGYKNAGTIEFLLD-QNGEFYFMEMNT 291


>gi|291515967|emb|CBK65177.1| carbamoyl-phosphate synthase large subunit [Alistipes shahii WAL
           8301]
          Length = 1060

 Score = 73.6 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 43/282 (15%), Positives = 95/282 (33%), Gaps = 38/282 (13%)

Query: 26  LEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH---------GNFGEDGL 67
           +  AG++   I         D   S  L    L  +   NV+H            G+  +
Sbjct: 578 IRAAGYEAIIINNNPETVSTDYTTSDKLYFEPLTVEDVMNVIHLEKPKAIVVSLGGQTAI 637

Query: 68  -VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQHLI 124
            +   L  L +P   +   A   + D+   ++++   G+P   +  V      + +   I
Sbjct: 638 NLAEPLAELGVPIIGTDTQAIKNAEDRGCFERIMEELGIPQPEAEAVTDIESGVRAAARI 697

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
             P +++P        + ++  ++ +   L  +   +    +L+++Y+ G EL    + D
Sbjct: 698 GYPVLVRPSYVLGGRAMQIVSNEERLRHYLQTAVEIDVDQPVLVDRYIMGKELEVDAICD 757

Query: 185 AS---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGC 240
                +      V  +  +S        +S  V P   +      ++          IG 
Sbjct: 758 GKEVFIPGIMEHVEHTGIHS-------GDSISVYPTFSVSQKAKDKIIDYTVKLGLRIGI 810

Query: 241 RGISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277
            G+    F+       V+ +E+N       P ++  +  P  
Sbjct: 811 VGLYNIQFIVAGEDD-VYVIEVNPRSSRTVPFLSKSTGVPMA 851



 Score = 69.0 bits (168), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 51/269 (18%), Positives = 100/269 (37%), Gaps = 32/269 (11%)

Query: 25  ALEDAGFKVSQ---------IDVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL++ G++V            D                V  ++   +PD     L G  G
Sbjct: 36  ALKEEGYEVILANSNPATIMTDTHIADKVYMEPLTLEYVAKIIRFERPDAIVPGLGGQTG 95

Query: 64  EDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFT 117
            +  VQ     IL+  ++    +   +   + D+   K++  S G PV PS +       
Sbjct: 96  LNLAVQLAKKGILKECQVEILGTSFESIERAEDRELFKELCESLGEPVLPSHIAMSIEEA 155

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IE 176
           +     I  P V++P       G      +  +   +  + S +   Q+L+E+ + G  E
Sbjct: 156 VAVAEEIGYPVVLRPAFTLGGTGGGFADDETELREMMRNALSLSPVHQVLVEKSIKGYKE 215

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAH 235
           +   VM D +     I   ++      +   + +S  V P++ +    ++ ++  A    
Sbjct: 216 IEYEVMRDRNDTAICICCMEN---IDPVGIHTGDSIVVAPSQTLTNKEFQMLRDSALKII 272

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +   G     F  DPLS K + +E+N 
Sbjct: 273 RELKIEGGCNVQFALDPLSFKYYLIEVNP 301


>gi|146309493|ref|YP_001189958.1| acetyl-CoA carboxylase [Pseudomonas mendocina ymp]
 gi|145577694|gb|ABP87226.1| acetyl-CoA carboxylase, biotin carboxylase [Pseudomonas mendocina
           ymp]
          Length = 471

 Score = 73.6 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 75/221 (33%), Gaps = 20/221 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            LH  +G   E+  +  I     + +            DK  +++ +   GVPV P    
Sbjct: 76  ALHPGYGFLSENAELAEICAERGVKFIGPSAEVIRRMGDKTEARRSMIKAGVPVTPGTEG 135

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGD 164
           N   +D        I  P ++K   GG   GI      + +           + ++   +
Sbjct: 136 NVADLDEALREAERIGYPVMLKATSGGGGRGIRRCNSREDLEQAYPRVISEATKAFGSAE 195

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDI 223
             L +  V+   +   V+ D+  +   +            K        + P  ++  + 
Sbjct: 196 VFLEKCIVNPKHIEAQVLADSFGNTVHLYERDCSIQRRNQKL-----IEIAPSPQLTPEQ 250

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              +  LA  A QA+G       +FL      +V+++E+N 
Sbjct: 251 RAYIGDLAVRAAQAVGYENAGTVEFLL--AEGEVYFMEMNT 289


>gi|126445266|ref|YP_001061370.1| acetyl-CoA carboxylase biotin carboxylase subunit [Burkholderia
           pseudomallei 668]
 gi|126224757|gb|ABN88262.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Burkholderia
           pseudomallei 668]
          Length = 481

 Score = 73.6 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 77/220 (35%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+    A +E   + +        A   DK R+++     GVP  P    
Sbjct: 92  AIHPGYGFLSENADFAAQVEAAGLIFVGPPARVIATMGDKARARETARRAGVPTVPGSEG 151

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK----DQSIPLDLLQSSSWNHGDQ 165
            +       +    I  P +IK   GG   GI V          +PL   ++ +      
Sbjct: 152 VVASLDGAREVAARIGYPVMIKAAAGGGGRGIRVAHDAAQLAAQLPLAQREAQAAFGDGG 211

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+++     +   ++GD   +V  +   +        K             +   + 
Sbjct: 212 VYLERFIARARHIEVQILGDGE-NVIHLFERECSLQRRRQKIL----EEAPSPSLTPALR 266

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +   A    + +G RG    ++LFD    + +++E+N 
Sbjct: 267 DALCASATRLARQVGYRGAGTLEYLFDDARGEFYFIEMNT 306


>gi|225856936|ref|YP_002738447.1| carbamoyl phosphate synthase large subunit [Streptococcus
           pneumoniae P1031]
 gi|254813663|sp|C1CL09|CARB_STRZP RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|225725308|gb|ACO21160.1| carbamoyl-phosphate synthase, large subunit [Streptococcus
           pneumoniae P1031]
          Length = 1058

 Score = 73.6 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 26/228 (11%), Positives = 77/228 (33%), Gaps = 19/228 (8%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--QHLISPPYV 129
           L    +    + +     + D+   +Q +    +P  P          +     I  P +
Sbjct: 646 LAKAGVTILGTQVADLDRAEDRDLFEQALKELDIPQPPGQTATNEEEAALAARKIGFPVL 705

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS--- 186
           ++P        + +++ ++ +   +  +   +    +L++ Y+ G E     + D     
Sbjct: 706 VRPSYVLGGRAMEIVENEEDLRSYMRTAVKASPDHPVLVDSYIVGQECEVDAISDGKDVL 765

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISR 245
           +      + ++  +S        +S  V P + +   + + +          + C G+  
Sbjct: 766 IPGIMEHIERAGVHS-------GDSMAVYPPQTLSQKVQETIADYTKRLAIGLHCLGMMN 818

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
             F+      KV+ +E+N +   T     P ++        ++   ++
Sbjct: 819 IQFVI--KDEKVYVIEVNPRASRT----VPFLSKVTNIPMAQVATKLI 860



 Score = 65.9 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 54/302 (17%), Positives = 115/302 (38%), Gaps = 37/302 (12%)

Query: 20  KACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNVL 58
           +AC S L++ G++V  ++        D+ +                +L   +PD     L
Sbjct: 32  QACLS-LKEEGYEVVLVNSNPATIMTDKEIADKVYIEPITLEFVTRILRKERPDALLPTL 90

Query: 59  HGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
            G  G +  ++     IL+ L +    + + A   + D+   KQ++     P+  S +VN
Sbjct: 91  GGQTGLNMAMELSKNGILDELSVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIVN 150

Query: 115 --RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                +     I  P +++P       G  +   ++ +          +   Q LIE+ +
Sbjct: 151 TVEEAVAFAATIGYPVIVRPAFTLGGTGGGMCANEKELREITENGLKLSPVTQCLIERSI 210

Query: 173 DG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRL 230
            G  E+   VM D++ +   + V   + +   +   + +S    PA+ +     + ++  
Sbjct: 211 AGFKEIEYEVMRDSADNA--LVVCNMENFD-PVGIHTGDSIVFAPAQTMSDYENQMLRDA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    +A+   G        DP S K + +E+N  P ++  S     +   GY   +L  
Sbjct: 268 SLSIIRALKIEGGCNVQLALDPNSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325


>gi|148989300|ref|ZP_01820680.1| carbamoyl phosphate synthase large subunit [Streptococcus
           pneumoniae SP6-BS73]
 gi|225854738|ref|YP_002736250.1| carbamoyl phosphate synthase large subunit [Streptococcus
           pneumoniae JJA]
 gi|254813662|sp|C1CEM9|CARB_STRZJ RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|147925278|gb|EDK76357.1| carbamoyl phosphate synthase large subunit [Streptococcus
           pneumoniae SP6-BS73]
 gi|225724177|gb|ACO20030.1| carbamoyl-phosphate synthase, large subunit [Streptococcus
           pneumoniae JJA]
          Length = 1058

 Score = 73.6 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 26/228 (11%), Positives = 77/228 (33%), Gaps = 19/228 (8%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--QHLISPPYV 129
           L    +    + +     + D+   +Q +    +P  P          +     I  P +
Sbjct: 646 LAKAGVTILGTQVADLDRAEDRDLFEQALKELDIPQPPGQTATNEEEAALAARKIGFPVL 705

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS--- 186
           ++P        + +++ ++ +   +  +   +    +L++ Y+ G E     + D     
Sbjct: 706 VRPSYVLGGRAMEIVENEEDLRSYMRTAVKASPDHPVLVDSYIVGQECEVDAISDGKDVL 765

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISR 245
           +      + ++  +S        +S  V P + +   + + +          + C G+  
Sbjct: 766 IPGIMEHIERAGVHS-------GDSMAVYPPQTLSQKVQETIADYTKRLAIGLHCLGMMN 818

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
             F+      KV+ +E+N +   T     P ++        ++   ++
Sbjct: 819 IQFVI--KDEKVYVIEVNPRASRT----VPFLSKVTNIPMAQVATKLI 860



 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 54/302 (17%), Positives = 115/302 (38%), Gaps = 37/302 (12%)

Query: 20  KACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNVL 58
           +AC S L++ G++V  ++        D+ +                +L   +PD     L
Sbjct: 32  QACLS-LKEEGYEVVLVNSNPATIMTDKEIADKVYIEPITLEFVTRILRKERPDALLPTL 90

Query: 59  HGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
            G  G +  ++     IL+ L +    + + A   + D+   KQ++     P+  S +VN
Sbjct: 91  GGQTGLNMAMELSKNGILDELGVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIVN 150

Query: 115 --RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                +     I  P +++P       G  +   ++ +          +   Q LIE+ +
Sbjct: 151 TVEEAVAFAATIGYPVIVRPAFTLGGTGGGMCANEKELREITENGLKLSPVTQCLIERSI 210

Query: 173 DG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRL 230
            G  E+   VM D++ +   + V   + +   +   + +S    PA+ +     + ++  
Sbjct: 211 AGFKEIEYEVMRDSADNA--LVVCNMENFD-PVGIHTGDSIVFAPAQTMSDYENQMLRDA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    +A+   G        DP S K + +E+N  P ++  S     +   GY   +L  
Sbjct: 268 SLSIIRALKIEGGCNVQLALDPNSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325


>gi|15903196|ref|NP_358746.1| carbamoyl phosphate synthase large subunit [Streptococcus
           pneumoniae R6]
 gi|60389779|sp|Q8CWR0|CARB_STRR6 RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|15458783|gb|AAK99956.1| Carbamoylphosphate synthase (ammonia), heavy subunit [Streptococcus
           pneumoniae R6]
          Length = 1058

 Score = 73.6 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 26/228 (11%), Positives = 77/228 (33%), Gaps = 19/228 (8%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--QHLISPPYV 129
           L    +    + +     + D+   +Q +    +P  P          +     I  P +
Sbjct: 646 LAKAGVTILGTQVADLDRAEDRDLFEQALKELDIPQPPGQTATNEEEAALAARKIGFPVL 705

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS--- 186
           ++P        + +++ ++ +   +  +   +    +L++ Y+ G E     + D     
Sbjct: 706 VRPSYVLGGRAMEIVENEEDLRSYMRTAVKASPDHPVLVDSYIVGQECEVDAISDGKNVL 765

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISR 245
           +      + ++  +S        +S  V P + +   + + +          + C G+  
Sbjct: 766 IPGIMEHIERAGVHS-------GDSMAVYPPQTLSQKVQETIADYTKRLAIGLHCLGMMN 818

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
             F+      KV+ +E+N +   T     P ++        ++   ++
Sbjct: 819 IQFVI--KDEKVYVIEVNPRASRT----VPFLSKVTNIPMAQVATKLI 860



 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 51/296 (17%), Positives = 110/296 (37%), Gaps = 36/296 (12%)

Query: 26  LEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNVLHGNFGE 64
           L++ G++V  ++        D+ +                +L    PD     L G  G 
Sbjct: 37  LKEEGYEVVLVNSNPATIMTDKEIADKVYIEPITLEFVTRILRKEGPDALLPTLGGQTGL 96

Query: 65  DGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTM 118
           +  ++     IL+ L +    + + A   + D+   KQ++     P+  S +VN     +
Sbjct: 97  NMAMELSKNGILDELGVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIVNTVEEAV 156

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IEL 177
                I  P +++P       G  +   ++ +          +   Q LIE+ + G  E+
Sbjct: 157 AFAATIGYPVIVRPAFTLGGTGGGMCANEKELREITENGLKLSPVTQCLIERSIAGFKEI 216

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQ 236
              VM D++ +   + V   + +   +   + +S    PA+ +     + ++  +    +
Sbjct: 217 EYEVMRDSADNA--LVVCNMENFD-PVGIHTGDSIVFAPAQTMSDYENQMLRDASLSIIR 273

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           A+   G        DP S K + +E+N  P ++  S     +   GY   +L   +
Sbjct: 274 ALKIEGGCNVQLALDPNSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAKI 325


>gi|15901135|ref|NP_345739.1| carbamoyl phosphate synthase large subunit [Streptococcus
           pneumoniae TIGR4]
 gi|111658502|ref|ZP_01409168.1| hypothetical protein SpneT_02000329 [Streptococcus pneumoniae
           TIGR4]
 gi|116516501|ref|YP_816600.1| carbamoyl phosphate synthase large subunit [Streptococcus
           pneumoniae D39]
 gi|148998914|ref|ZP_01826349.1| carbamoyl phosphate synthase large subunit [Streptococcus
           pneumoniae SP11-BS70]
 gi|225860894|ref|YP_002742403.1| carbamoyl phosphate synthase large subunit [Streptococcus
           pneumoniae Taiwan19F-14]
 gi|298230795|ref|ZP_06964476.1| carbamoyl phosphate synthase large subunit [Streptococcus
           pneumoniae str. Canada MDR_19F]
 gi|298254285|ref|ZP_06977871.1| carbamoyl phosphate synthase large subunit [Streptococcus
           pneumoniae str. Canada MDR_19A]
 gi|298502728|ref|YP_003724668.1| carbamoyl phosphate synthase large subunit [Streptococcus
           pneumoniae TCH8431/19A]
 gi|307067923|ref|YP_003876889.1| carbamoylphosphate synthase large subunit [Streptococcus pneumoniae
           AP200]
 gi|22095521|sp|Q97QE4|CARB_STRPN RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|122278514|sp|Q04K48|CARB_STRP2 RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|254813664|sp|C1CR31|CARB_STRZT RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|14972759|gb|AAK75379.1| carbamoyl-phosphate synthase, large subunit [Streptococcus
           pneumoniae TIGR4]
 gi|116077077|gb|ABJ54797.1| carbamoyl-phosphate synthase, large subunit [Streptococcus
           pneumoniae D39]
 gi|147755224|gb|EDK62276.1| carbamoyl phosphate synthase large subunit [Streptococcus
           pneumoniae SP11-BS70]
 gi|225726462|gb|ACO22313.1| carbamoyl-phosphate synthase, large subunit [Streptococcus
           pneumoniae Taiwan19F-14]
 gi|298238323|gb|ADI69454.1| carbamoyl phosphate synthase large subunit [Streptococcus
           pneumoniae TCH8431/19A]
 gi|306409460|gb|ADM84887.1| carbamoylphosphate synthase large subunit [Streptococcus pneumoniae
           AP200]
 gi|327389510|gb|EGE87855.1| carbamoyl-phosphate synthase, large subunit [Streptococcus
           pneumoniae GA04375]
 gi|332073614|gb|EGI84093.1| carbamoyl-phosphate synthase, large subunit [Streptococcus
           pneumoniae GA17570]
 gi|332200720|gb|EGJ14792.1| carbamoyl-phosphate synthase, large subunit [Streptococcus
           pneumoniae GA41317]
          Length = 1058

 Score = 73.6 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 26/228 (11%), Positives = 77/228 (33%), Gaps = 19/228 (8%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--QHLISPPYV 129
           L    +    + +     + D+   +Q +    +P  P          +     I  P +
Sbjct: 646 LAKAGVTILGTQVADLDRAEDRDLFEQALKELDIPQPPGQTATNEEEAALAARKIGFPVL 705

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS--- 186
           ++P        + +++ ++ +   +  +   +    +L++ Y+ G E     + D     
Sbjct: 706 VRPSYVLGGRAMEIVENEEDLRSYMRTAVKASPDHPVLVDSYIVGQECEVDAISDGKNVL 765

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISR 245
           +      + ++  +S        +S  V P + +   + + +          + C G+  
Sbjct: 766 IPGIMEHIERAGVHS-------GDSMAVYPPQTLSQKVQETIADYTKRLAIGLHCLGMMN 818

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
             F+      KV+ +E+N +   T     P ++        ++   ++
Sbjct: 819 IQFVI--KDEKVYVIEVNPRASRT----VPFLSKVTNIPMAQVATKLI 860



 Score = 67.5 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 54/302 (17%), Positives = 114/302 (37%), Gaps = 37/302 (12%)

Query: 20  KACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNVL 58
           +AC S L++ G++V  ++        D+ +                +L    PD     L
Sbjct: 32  QACLS-LKEEGYEVVLVNSNPATIMTDKEIADKVYIEPITLEFVTRILRKEGPDALLPTL 90

Query: 59  HGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
            G  G +  ++     IL+ L +    + + A   + D+   KQ++     P+  S +VN
Sbjct: 91  GGQTGLNMAMELSKNGILDELGVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIVN 150

Query: 115 --RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                +     I  P +++P       G  +   ++ +          +   Q LIE+ +
Sbjct: 151 TVEEAVAFAATIGYPVIVRPAFTLGGTGGGMCANEKELREITENGLKLSPVTQCLIERSI 210

Query: 173 DG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRL 230
            G  E+   VM D++ +   + V   + +   +   + +S    PA+ +     + ++  
Sbjct: 211 AGFKEIEYEVMRDSADNA--LVVCNMENFD-PVGIHTGDSIVFAPAQTMSDYENQMLRDA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    +A+   G        DP S K + +E+N  P ++  S     +   GY   +L  
Sbjct: 268 SLSIIRALKIEGGCNVQLALDPNSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325


>gi|312793754|ref|YP_004026677.1| carbamoyl-phosphate synthase, large subunit [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312876847|ref|ZP_07736824.1| carbamoyl-phosphate synthase, large subunit [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|311796362|gb|EFR12714.1| carbamoyl-phosphate synthase, large subunit [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|312180894|gb|ADQ41064.1| carbamoyl-phosphate synthase, large subunit [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 1077

 Score = 73.6 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 27/232 (11%), Positives = 81/232 (34%), Gaps = 18/232 (7%)

Query: 68  VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTMDSQHLIS 125
           + + L    +    + + +   + D+ +   ++ +  +P  P          +     I 
Sbjct: 646 MASYLAKNGVKILGTSMESIDTAEDRDKFLNLLKNLNIPYPPGGAAYSLEDAVRVAEKIG 705

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            P +++P        + ++     +   +  +   +    +LI++Y+ G E     + D 
Sbjct: 706 YPVLVRPSYVLGGRAMEIVYSRDELEKYIKAAIEISIKHPILIDKYILGKEAEVDGISDG 765

Query: 186 S---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCR 241
               +      + ++  +S        +S  V P   +   + +++        +A+   
Sbjct: 766 EDVLIPGIMEHIERAGVHS-------GDSMAVFPPHTLSEKVKEKIVDYTIKLARALKVV 818

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           G+    F+ D     V+ +E+N +   T     P ++   G    ++   ++
Sbjct: 819 GLFNIQFVIDKNEN-VYVIEVNPRASRT----VPILSKVTGIPMIKIATKLI 865



 Score = 64.8 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 48/288 (16%), Positives = 108/288 (37%), Gaps = 37/288 (12%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFN---------- 56
           G ++E + S   G     AL++ G +V  ++ + +  +    +  D  +           
Sbjct: 21  GQAAEFDYS---GTQACRALKEEGIEVVLVNSNPATIMTDTEI-ADRVYIEPISVDYIEE 76

Query: 57  ---------VLHGNFGEDG-------LVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
                    +L G  G+             ILE   +    + +     + D+   K+ +
Sbjct: 77  IIKKERPQGLLAGLGGQTALNMAFELAEAGILEKYGVSLLGTSLETIKKAEDRELFKKTM 136

Query: 101 SSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS 158
              G PV  SI+ +  +  ++    +  P +++P       G  +   ++ +     +  
Sbjct: 137 IEIGEPVPKSIIAHSVQEAIEFAREVGYPVIVRPAYTLGGTGGGIAYNEEDLRYIASKGL 196

Query: 159 SWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
             +   Q+LIEQ V G  E+   VM D++ +   I V   +     +   + +S  V P+
Sbjct: 197 KLSLIHQVLIEQSVLGWKEIEYEVMRDSNDN--CITVCNMENID-PVGIHTGDSIVVAPS 253

Query: 218 K-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +    Y+ ++  +    +++   G     F  +P S +   +E+N 
Sbjct: 254 QTLSDKEYQMLRSASLNIIRSLKIEGGCNVQFALNPNSMEYVVIEVNP 301


>gi|257881130|ref|ZP_05660783.1| phosphoribosylaminoimidazole carboxylase [Enterococcus faecium
           1,231,502]
 gi|257816788|gb|EEV44116.1| phosphoribosylaminoimidazole carboxylase [Enterococcus faecium
           1,231,502]
          Length = 370

 Score = 73.6 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 37/207 (17%), Positives = 85/207 (41%), Gaps = 15/207 (7%)

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTMDSQ 121
           E+  V+A+  +L + +   G    A++ D++  K  + +  + + P   +       D+ 
Sbjct: 74  ENVSVEALNAILPMSFIPQGTDLLAITQDRLLEKSFLETNNIVIAPYATIVSPTDIQDAI 133

Query: 122 HLISPPYVIKPLKGG-SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTC 179
             I  P V+K  +GG    G  V+K    +   +            ++E ++    E++ 
Sbjct: 134 DGIGYPCVLKTTRGGYDGKGQYVLKSRADLAPAMDL----LREGTCVLEAWIPFEKEISI 189

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
            V G+   D T   V ++        ++++    + PA I  D+ +E +R+A +  +A+ 
Sbjct: 190 MVAGNGQGDFTTFPVVENIH------HNNILHETIAPAAIDQDVIEEAERIARVIAEAVS 243

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQP 266
             G+   +         ++  E+  +P
Sbjct: 244 LSGVLGVEMFLTKTGG-LYVNELAPRP 269


>gi|257095850|ref|YP_003169491.1| carbamoyl-phosphate synthase L chain ATP-binding [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
 gi|257048374|gb|ACV37562.1| Carbamoyl-phosphate synthase L chain ATP-binding [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
          Length = 680

 Score = 73.6 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 38/224 (16%), Positives = 78/224 (34%), Gaps = 21/224 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+           I +      A      K  +K ++++ GVP+ P    
Sbjct: 77  AIHPGYGFLSENDRFADACAAAGIVFIGPPAAAIRAMGSKSAAKTLMAAAGVPLTPGYHG 136

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
           +    +        I  P +IK   GG   G+ V+++ +     L     +++S    +Q
Sbjct: 137 DDQEPEFLQGQADAIGYPVLIKASAGGGGKGMRVVERSEDFAAALASCRREAASSFASEQ 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           +LIE+Y+     +   V  D+                  ++          PA  +    
Sbjct: 197 VLIEKYLSRSRHIEIQVFADSLGHCV-----HLFERDCSVQRRHQKVLEEAPAPGMTPAR 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDP---LSRKVFWLEINV 264
              + + A  A +A+G  G    +F+           +++E+N 
Sbjct: 252 RAAMGKAAVDAARAVGYVGAGTVEFIASDSFAEDGSFYFMEMNT 295


>gi|227541853|ref|ZP_03971902.1| acyl coenzyme A carboxylase [Corynebacterium glucuronolyticum ATCC
           51866]
 gi|227182296|gb|EEI63268.1| acyl coenzyme A carboxylase [Corynebacterium glucuronolyticum ATCC
           51866]
          Length = 652

 Score = 73.6 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 35/222 (15%), Positives = 71/222 (31%), Gaps = 19/222 (8%)

Query: 56  NVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
           N +H  +G   E+G     +    + +      +     DK+ ++ +      P+ P   
Sbjct: 141 NAIHPGYGFLSENGDFAEAVINAGLIWIGPSPQSIRDLGDKVTARHIAERANAPMAPGTK 200

Query: 113 VNRFTMDS----QHLISPPYVIKPLKGGSSLGIIVI----KKDQSIPLDLLQSSSWNHGD 164
                 D           P  IK   GG   G+ V     +          ++++     
Sbjct: 201 DPVKDADEVVKFAEEHGLPIAIKAAFGGGGRGMKVAYTMDEVKDQFESATREATTAFGRG 260

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
           +  +E+Y+D    + C V+GD   +V  +           L+          PA  +  +
Sbjct: 261 ECFVERYLDRARHVECQVLGDQHGNVVVVGT-----RDCSLQRRFQKVVEEAPAPYLTDE 315

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
               +   A    +  G  G    ++L       + +LE+N 
Sbjct: 316 QRTRLHESAKAICKEAGYYGAGTVEYLV-GSDGLISFLEVNT 356


>gi|149410706|ref|XP_001508054.1| PREDICTED: similar to Propionyl-Coenzyme A carboxylase, alpha
           polypeptide [Ornithorhynchus anatinus]
          Length = 327

 Score = 73.6 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 39/202 (19%), Positives = 67/202 (33%), Gaps = 16/202 (7%)

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI--LVNRFTMDS--QHLISPPY 128
           E   I +      A     DK+ SK +  +  V   P    +V            I  P 
Sbjct: 101 EANGITFIGPDTHAIQAMGDKIESKLLAKNAKVNTIPGFDGVVKDADEAVRIAREIGYPV 160

Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGDQLLIEQYVD-GIELTCGVM 182
           +IK   GG   G+ +   D+             +SS+   D+LLIE+++D    +   V+
Sbjct: 161 MIKASAGGGGKGMRIAWDDEETRDGFRFSSQEAASSFG-DDRLLIEKFIDNPRHIEIQVL 219

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
           GD   +   +   +        K             +     K +   A    +A+    
Sbjct: 220 GDKHGNALWLNERECSIQRRNQK----VVEEAPSTFLDPKTRKAMGEQAVALAKAVKYSS 275

Query: 243 ISRSDFLFDPLSRKVFWLEINV 264
               +FL D      ++LE+N 
Sbjct: 276 AGTVEFLVDSKKN-FYFLEMNT 296


>gi|315638179|ref|ZP_07893361.1| acetyl-CoA carboxylase, biotin carboxylase [Campylobacter
           upsaliensis JV21]
 gi|315481715|gb|EFU72337.1| acetyl-CoA carboxylase, biotin carboxylase [Campylobacter
           upsaliensis JV21]
          Length = 481

 Score = 73.6 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 89/222 (40%), Gaps = 20/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H  +G   E+  +    E   I +            +K  ++ +++  G+PV P    
Sbjct: 78  AIHPGYGFLSENYEIAKACEEANIIFIGPKSEVIYKMGNKNIARNLMAKNGIPVVPGTEK 137

Query: 113 VNRFTM----DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGD 164
           +N  ++    +    I  P ++K   GG   GI V+ +++ +         ++ ++ + D
Sbjct: 138 LNDLSLAQLKEQAERIGYPVILKASGGGGGRGIRVVHQEEELENAFESCKREALAYFNND 197

Query: 165 QLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
           ++ +E+Y+ +   +   V+GD   ++  +            K        + P   I  +
Sbjct: 198 EVFMEKYIVNPRHIEFQVLGDNYGNIIHLCERDCSIQRRHQK-----VVEIAPCPGISEN 252

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + K +   A  A +A+        +FL D  +R  +++E+N 
Sbjct: 253 LRKTMGVTAVAAAKAVSYTNAGTIEFLLDDYNR-FYFMEMNT 293


>gi|325831454|ref|ZP_08164708.1| carbamoyl-phosphate synthase, large subunit [Eggerthella sp. HGA1]
 gi|325486708|gb|EGC89156.1| carbamoyl-phosphate synthase, large subunit [Eggerthella sp. HGA1]
          Length = 1078

 Score = 73.6 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 47/278 (16%), Positives = 94/278 (33%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG      L+  G++V  +         D                V  V+A  +PD    
Sbjct: 29  SGAQACKVLKADGYRVVLVNSNPATIMTDPGLADRTYVEPITVEFVEQVIAKERPDALLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--S 110
            L G  G +  V+     IL    +      + A     D+ +  + ++  G+       
Sbjct: 89  TLGGQTGLNTAVELARAGILAKYGVEMIGCDLEAIERGEDRKQFNECMAELGIETSRSGY 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                   D    +  P V++P       G  +      +   + Q    +   ++L+E+
Sbjct: 149 AYSIADAEDIVAELGYPVVLRPSFTLGGAGGGIAHDAAELHEIVGQGLELSPAGEVLVEE 208

Query: 171 YVDG-IELTCGVMGDASL-DVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            ++G  E    VM D +   +   ++   D           +S  V PA+ +    Y+ +
Sbjct: 209 SIEGWKEYEMEVMRDRAGNGIIVCSIENFDAMGVHT----GDSITVAPAQTLTDVEYQRM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RAASLAILEKIGVETGGSNVQFAVNPENGRMIVIEMNP 302



 Score = 60.9 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/220 (11%), Positives = 77/220 (35%), Gaps = 12/220 (5%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGV--PVCPSILVNRFTMDSQHLISPPYVIKPL 133
            +P   +   A  L+ D+ R   V+   G+  P        +        I  P +++P 
Sbjct: 658 GVPIMGTSPEAIDLAEDRDRFAAVLDELGIVYPAAGMASTYQEACVVADRIGFPLLVRPS 717

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEI 192
                 G+ ++     +   + +++  +    + ++++++G +E+    + D        
Sbjct: 718 YVLGGRGMGIVYDGAQLEKYMAEAAKISPDHPVYLDRFLEGAVEVDLDALCDGEQVFVGG 777

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            +   +       +S  ++    P  +   +  +++ +A      +G  G+    F    
Sbjct: 778 VLEHIEMAGI---HSGDSACCTPPFALSEAVQAQLRAIARRLALRLGVVGLINIQFAI-- 832

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
             + ++ +E N +   T     P  +   G    ++   +
Sbjct: 833 KDQVIYIIEANPRASRT----VPFASKATGVPLAKVAARI 868


>gi|311696825|gb|ADP99698.1| acetyl-CoA carboxylase biotin carboxylase subunit [marine bacterium
           HP15]
          Length = 473

 Score = 73.6 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 76/220 (34%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            LH  +G   E+  + AI E   I +      A +   DK +++Q   + GVPV P    
Sbjct: 77  ALHPGYGFLSENAELAAICEQRGITFVGPSANAISSMGDKTQARQTALAAGVPVTPGSEG 136

Query: 114 NRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGD 164
           N   ++        I  P ++K   GG   GI     ++ +  +        + ++   +
Sbjct: 137 NLADVEDAVVQAADIGYPVMLKATSGGGGRGIRRCDNEKELRQNFERVISEATKAFGSAE 196

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             L +  ++   +   ++ D   +V  +            K            ++     
Sbjct: 197 VFLEKCIIEPRHIEVQILADTHGNVVHLYERDCSIQRRNQK----LIELAPSPQLEESQR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +  LA    +  G       +FL D      +++E+N 
Sbjct: 253 EYIGDLAKRVAKQCGYVNAGTVEFLLD-HDGSFYFMEMNT 291


>gi|303231601|ref|ZP_07318325.1| carbamoyl-phosphate synthase, large subunit [Veillonella atypica
           ACS-049-V-Sch6]
 gi|302513718|gb|EFL55736.1| carbamoyl-phosphate synthase, large subunit [Veillonella atypica
           ACS-049-V-Sch6]
          Length = 1066

 Score = 73.6 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 40/262 (15%), Positives = 98/262 (37%), Gaps = 28/262 (10%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH--------GNFGEDGL 67
           AL  AG++   I         D D S  L    L  D    ++           FG    
Sbjct: 578 ALRKAGYQSIMINNNPETVSTDFDISDSLYFEPLTVDDVMEIIDKEKPAGVIAQFGGQTA 637

Query: 68  V--QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTMDSQHL 123
           +     L    +    + + +  ++ D+ R  ++++  G+P     LV  +     +   
Sbjct: 638 INLAGPLAKRGVKILGTSVDSIDMAEDRERFDELLAKLGIPRPVGALVTSDEEAQAAAKN 697

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           +  P +++P        + ++  D+ + + + ++   +    +LI++Y+ G+E+    + 
Sbjct: 698 LKYPLIVRPSYVLGGRAMEIVYNDKELDVYMKEAVVASKEHPVLIDRYMVGMEVEVDAIS 757

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRG 242
           D     T++ +P            S +S  V PA+ +  +I  ++          +  +G
Sbjct: 758 DG----TDVCIPGIMEQIERAGVHSGDSMAVYPAQHLSQEIIDQIVDYTRRIAIGLNVKG 813

Query: 243 ISRSDFLFDPLSRKVFWLEINV 264
           +    ++      ++  +E+N 
Sbjct: 814 VLNIQYIV--ADGELNVIEVNP 833



 Score = 60.1 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 48/286 (16%), Positives = 99/286 (34%), Gaps = 33/286 (11%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI---------DVD------------RSVGLV 45
           G ++E + +   G     +L + G+KV  +         D D              V  V
Sbjct: 19  GQAAEFDYA---GTQACRSLREEGYKVVLVNSNPATIMTDTDIADRVYVEPISLEFVTEV 75

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   +P      L G  G +  VQ     +LE   +    + + A   + D+   K+ + 
Sbjct: 76  IKKERPWGLLATLGGQVGLNMAVQLSEAGVLEEYGVKLLGTTLEAIKHAEDRELFKEAMK 135

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
               PV  S + N     +   + I  P +I+P       G  +   +  +     +   
Sbjct: 136 EINQPVPESDIFNDLEEAVAFANRIGYPIIIRPAYTLGGTGGGIAHNEDEMYEITRRGLK 195

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   Q+L E+ V G  E+   VM D++ +   I V   +       ++  +        
Sbjct: 196 LSPIHQILAERSVAGWKEIEYEVMRDSADN--CIIVCNMENIDPVGVHTGDSIVVAPSQT 253

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +    Y+ ++  +    + +   G     +  +P S +   +E+N 
Sbjct: 254 LNDIQYQMLRTASVDIIRYLKIEGGCNVQYALNPDSNEYIVIEVNP 299


>gi|15643213|ref|NP_228257.1| phosphoribosylaminoimidazole carboxylase ATPase subunit [Thermotoga
           maritima MSB8]
 gi|4980965|gb|AAD35542.1|AE001723_12 phosphoribosylaminoimidazole carboxylase, ATPase subunit
           [Thermotoga maritima MSB8]
          Length = 380

 Score = 73.6 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 41/202 (20%), Positives = 78/202 (38%), Gaps = 17/202 (8%)

Query: 68  VQAILELLEIPY-THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP 126
           VQ + +L    Y  H       +  DK   K+ +   G+PV    LV     D +     
Sbjct: 75  VQTLKKLYNEGYKIHPSPYTLEIIQDKFVQKEFLKKNGIPVPEYKLVKDLESDVRE-FGF 133

Query: 127 PYVIKPLKGG-SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGD 184
           P V K  KGG    G+ +IK ++ +   +          +  +E++V+   EL   V  +
Sbjct: 134 PVVQKARKGGYDGRGVFIIKNEKDLENAI--------KGETYLEEFVEIEKELAVMVARN 185

Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244
              ++    V +  ++  +    ++  T + PA+I     K  + +A    +A+   GI 
Sbjct: 186 EKGEIACYPVVEM-YFDEDA---NICDTVIAPARIEEKYSKIAREIATSVVEALEGVGIF 241

Query: 245 RSDFLFDPLSRKVFWLEINVQP 266
             +        ++   EI  +P
Sbjct: 242 GIEMFLTKQ-GEILVNEIAPRP 262


>gi|329960550|ref|ZP_08298917.1| phosphoribosylglycinamide formyltransferase 2 [Bacteroides fluxus
           YIT 12057]
 gi|328532614|gb|EGF59404.1| phosphoribosylglycinamide formyltransferase 2 [Bacteroides fluxus
           YIT 12057]
          Length = 388

 Score = 73.6 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 47/253 (18%), Positives = 85/253 (33%), Gaps = 37/253 (14%)

Query: 33  VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
            S +D D ++  V+   +PD+    +     E         L +       ++ SA +++
Sbjct: 48  FSMLDGD-ALERVVRKHQPDIIVPEIEAIRTE--------RLYDFEKEGIQVVPSARAVN 98

Query: 93  -----KMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVIK 145
                K          G+                +   I  P V+KPL   S  G  ++K
Sbjct: 99  FTMNRKAIRDLAAKELGLKTARYFYAKSLDELKAAAEKIGFPCVVKPLMSSSGKGQSLVK 158

Query: 146 KDQSIPLDLLQSSSWNHGD--QLLIEQYVDGIE----LTCGVMGDASLDVTEIA-VPKSD 198
               +        + + GD  +L+IE+++        LT       +L    I  V K  
Sbjct: 159 SADELEHAWEYGCNGSRGDIKELIIEEFIKFDSEITLLTVTQKNGPTLFCPPIGHVQKGG 218

Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
            Y               PA I      E Q +A    +A+   G+   +F     +  V+
Sbjct: 219 DY----------RESFQPAHIDPAHLVEAQDMAEKVTRALTGAGLWGVEFFLSHENG-VY 267

Query: 259 WLEINVQP---GM 268
           + E++ +P   GM
Sbjct: 268 FSELSPRPHDTGM 280


>gi|165977309|ref|YP_001652902.1| acetyl-CoA carboxylase biotin carboxylase subunit [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
 gi|303249705|ref|ZP_07335910.1| acetyl-CoA carboxylase biotin carboxylase subunit [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|307251138|ref|ZP_07533060.1| Biotin carboxylase [Actinobacillus pleuropneumoniae serovar 4 str.
           M62]
 gi|307253556|ref|ZP_07535424.1| Biotin carboxylase [Actinobacillus pleuropneumoniae serovar 6 str.
           Femo]
 gi|307257972|ref|ZP_07539725.1| Biotin carboxylase [Actinobacillus pleuropneumoniae serovar 10 str.
           D13039]
 gi|165877410|gb|ABY70458.1| biotin carboxylase [Actinobacillus pleuropneumoniae serovar 3 str.
           JL03]
 gi|302651517|gb|EFL81668.1| acetyl-CoA carboxylase biotin carboxylase subunit [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306856804|gb|EFM88938.1| Biotin carboxylase [Actinobacillus pleuropneumoniae serovar 4 str.
           M62]
 gi|306858936|gb|EFM90981.1| Biotin carboxylase [Actinobacillus pleuropneumoniae serovar 6 str.
           Femo]
 gi|306863519|gb|EFM95449.1| Biotin carboxylase [Actinobacillus pleuropneumoniae serovar 10 str.
           D13039]
          Length = 447

 Score = 73.6 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 80/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         L  DK+ +   +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAEQVENSGFTFIGPTADVIRLMGDKVSAINAMKKAGVPCVPGSDG 136

Query: 112 ---LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
                     +    I  P +IK   GG   G+ V+  ++ +   +     ++ +  + D
Sbjct: 137 PVGNDPVKNKEIAKRIGYPVIIKASGGGGGRGMRVVYNEKDLEESIAMTKAEAKAAFNND 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+Y++    +   V+ D   +   +A           K          PA  I  +
Sbjct: 197 MVYMEKYLENPRHIEIQVLADTHGNAVYLAERDCSMQRRHQK-----VVEEAPAPGITPE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + K +      A + IG RG    +FLF   + + +++E+N 
Sbjct: 252 LRKFIGERCANACREIGYRGAGTFEFLF--ENGEFYFIEMNT 291


>gi|160895457|ref|YP_001561039.1| acetyl-CoA carboxylase, biotin carboxylase [Delftia acidovorans
           SPH-1]
 gi|160361041|gb|ABX32654.1| acetyl-CoA carboxylase, biotin carboxylase [Delftia acidovorans
           SPH-1]
          Length = 465

 Score = 73.6 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 73/220 (33%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+      +E   + +      A     DK  ++      GVP  P    
Sbjct: 80  AVHPGYGFLSENAAFAERIEGAGLVFVGPTPHAIRTMGDKAAARAAAMKAGVPTVPGSVG 139

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
            +      +     I  P +IK   GG   GI V   +  +      +++         +
Sbjct: 140 AVTDADTAVAVAKDIGYPIMIKASAGGGGRGIRVAHDEAELRQQFATATAEAQAAFGNGE 199

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+++     +   ++GD    V      +        K           A I     
Sbjct: 200 VYLERFIRQARHIEVQILGDGQ-RVVHCFERECSLQRRRQK----VWEEAPSAAISEATR 254

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +   A     A+  RG    ++L+D  +R+ F++E+N 
Sbjct: 255 AALCESALRLAHAVAYRGAGTLEYLYDDDTREFFFIEMNT 294


>gi|1177653|emb|CAA63311.1| biotin carboxylase and biotin carboxyl carrier protein
           [Saccharopolyspora erythraea NRRL 2338]
          Length = 591

 Score = 73.6 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 73/221 (33%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLV-QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            +H  +G   E+    QA+L+   + +      A  +  DK+ ++++    G P+ P   
Sbjct: 85  AVHPGYGFLSENADFAQAVLD-AGLVWVGPSPEAIRVLGDKVTARRIALEVGAPLVPGTE 143

Query: 113 VNRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSWNHGD 164
                 D           P  IK   GG   G+ V +  + IP      + ++ +     
Sbjct: 144 EPASGADEVVAFAEEHGLPVAIKAAFGGGGRGLKVARSLEEIPGLFESAVREAEAAFGRG 203

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           +  +E+Y+D    +   V+ D    V  +            K             +  + 
Sbjct: 204 ECFVERYLDRPRHVEAQVLADRHGGVVVVGTRDCSLQRRHQK----LVEEAPAPFLSEEQ 259

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +   A       G  G    +FL       + +LE+N 
Sbjct: 260 RERIHTAAREICARAGYAGAGTVEFLV-GADGTISFLEVNT 299


>gi|329765848|ref|ZP_08257414.1| ATP binding carbamoyl-phosphate synthase, L chain [Candidatus
           Nitrosoarchaeum limnia SFB1]
 gi|329137691|gb|EGG41961.1| ATP binding carbamoyl-phosphate synthase, L chain [Candidatus
           Nitrosoarchaeum limnia SFB1]
          Length = 495

 Score = 73.6 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 34/219 (15%), Positives = 77/219 (35%), Gaps = 17/219 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+       E  +I +     ++  L  DKM+ K  +    VP  P    
Sbjct: 77  AIHPGYGFLSENSDFTGKCEKNKINFIGPSSVSMELCGDKMQCKAAMLKAKVPTVPGSPG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
            +      +   + IS P ++K + GG   GI ++  D+ +       +S +        
Sbjct: 137 LVKDVEEALKIANDISYPVLLKSVFGGGGRGIRLVNNDKELREGFETVTSESISAVGKSA 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           +++E+++     +   +  D   +   I   +        K             +     
Sbjct: 197 IIVEKFLQKTRHIEYQMARDKHGNAVHIFERECSIQRRNQK----LIEQTPSPVVDQKTR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
             +  L   A +A+    +  ++F     + + +++EIN
Sbjct: 253 DRIGELVVKASEAVDYTNLGTAEF-LRADNGEFYFIEIN 290


>gi|254416184|ref|ZP_05029939.1| carbamoyl-phosphate synthase, large subunit [Microcoleus
           chthonoplastes PCC 7420]
 gi|196177117|gb|EDX72126.1| carbamoyl-phosphate synthase, large subunit [Microcoleus
           chthonoplastes PCC 7420]
          Length = 1072

 Score = 73.6 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 56/279 (20%), Positives = 105/279 (37%), Gaps = 36/279 (12%)

Query: 18  SGKACASALEDAGFKVSQID------------VDRS---------VGLVLAHLKPDLAFN 56
           SG     AL+  G++V  ++             DR+         V  V+A  +PD    
Sbjct: 17  SGTQACKALQQEGYEVVLVNSNPATIMTDPETADRTYIEPLTPEIVEKVIAKERPDALLP 76

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  V      +L+   +    + + A  ++ D+   K+ +   G+ VCPS +
Sbjct: 77  TMGGQTALNIAVTLAKNGVLDKYGVDLIGAKLDAIEMAEDRQLFKEAMGRIGIGVCPSGI 136

Query: 113 ---VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
              ++     +Q + + P +I+P       G  +    +            +   Q+L+E
Sbjct: 137 ASNLDEAKALAQRIGTYPLIIRPAYTLGGTGGGIAYNQEEYEEMAQAGLDASPVSQILVE 196

Query: 170 QYVDG-IELTCGVMGD-ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKE 226
           Q + G  E    VM D A   V   ++   D           +S  V PA+ +    Y+ 
Sbjct: 197 QSLLGWKEYELEVMRDLADNVVIICSIENLDPMGVHT----GDSITVAPAQTLTDKEYQR 252

Query: 227 VQRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           ++  +    + IG   G S   F  +P+S  V  +E+N 
Sbjct: 253 LRDYSIQIIREIGVETGGSNIQFAINPVSGDVIVIEMNP 291



 Score = 50.9 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/235 (13%), Positives = 83/235 (35%), Gaps = 19/235 (8%)

Query: 68  VQAILELLEIPYT------HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MD 119
           +Q  L   EIP +       +   +  ++ D+ R ++++    +   P+ +   +   ++
Sbjct: 640 LQEFLNNPEIPTSVPTKIWGTSPDSIDIAEDRERFEKILRQLDIKQPPNGIARSYEEALN 699

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELT 178
               I  P V++P        + ++  D  +   +  +        +LI+++++  IE+ 
Sbjct: 700 IAKRIGYPVVVRPSYVLGGRAMEIVYSDLELERYMTFAVQVEPEHPILIDKFLENAIEVD 759

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQA 237
              + D +  V    + +   +  +    S +S   +P   +     + ++         
Sbjct: 760 VDAIADHTGRVVIGGIME---HIEQAGIHSGDSACSIPFISLSPTAMETIRTSTHQLATK 816

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +   G+    F        V+ LE N +   T     P ++   G     L   +
Sbjct: 817 LKVIGLMNIQFAV--QGETVYILEANPRASRT----VPYVSKATGVPLAALASRI 865


>gi|114570277|ref|YP_756957.1| carbamoyl-phosphate synthase L chain, ATP-binding [Maricaulis maris
           MCS10]
 gi|114340739|gb|ABI66019.1| Carbamoyl-phosphate synthase L chain, ATP-binding protein
           [Maricaulis maris MCS10]
          Length = 667

 Score = 73.6 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 44/225 (19%), Positives = 78/225 (34%), Gaps = 22/225 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+           I +      A      K R+K ++   GVPV P    
Sbjct: 77  AIHPGYGFLSENAAFADACATNNIIFVGPSADAIRAMGLKDRAKALMEEAGVPVTPGYHG 136

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
                D        I  P +IK + GG   G+  ++        L     +SS     D+
Sbjct: 137 ENQDPDHLAAEAGRIGYPVLIKAVAGGGGKGMRKVEAAADFLAALDSCKRESSKSFGDDR 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           +LIE+++     +   V GD+   V  +           L+          PA  +  ++
Sbjct: 197 VLIEKFITNPRHIEVQVFGDSRGRVIHLYE-----RDCSLQRRHQKVIEEAPAPGMTPNV 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLS----RKVFWLEINV 264
            + +   A  A +A+   G    +F+ D          F++E+N 
Sbjct: 252 RQAMCSAAINAAKAVDYVGAGTVEFIVDGSGELREDGFFFMEMNT 296


>gi|330812670|ref|YP_004357132.1| bifunctional protein: arbamoyl-phosphate synthase L chain; biotin
           carboxylase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327380778|gb|AEA72128.1| putative bifunctional protein: arbamoyl-phosphate synthase L chain;
           biotin carboxylase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 471

 Score = 73.6 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 76/221 (34%), Gaps = 20/221 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            LH  +G   E+  +  I     I +            DK  +++ +   GVPV P    
Sbjct: 76  ALHPGYGFLSENAELADICAERGIKFIGPSAEVIRRMGDKTEARRSMIKAGVPVTPGTEG 135

Query: 114 N----RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGD 164
           N       +     I  P ++K   GG   GI      + +           + ++   +
Sbjct: 136 NVSGIEEALTEGDRIGYPVMLKATSGGGGRGIRRCNSREELEQAFPRVISEATKAFGSAE 195

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDI 223
             L +  V+   +   ++GD+  +V  +            K        + P  ++  + 
Sbjct: 196 VFLEKCIVNPKHIEAQILGDSFGNVVHLFERDCSIQRRNQKL-----IEIAPSPQLTPEQ 250

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              +  L+  A +A+G       +FL      +V+++E+N 
Sbjct: 251 RAYIGDLSVRAAKAVGYENAGTVEFLL--AEGEVYFMEMNT 289


>gi|313672460|ref|YP_004050571.1| pyruvate carboxylase [Calditerrivibrio nitroreducens DSM 19672]
 gi|312939216|gb|ADR18408.1| pyruvate carboxylase [Calditerrivibrio nitroreducens DSM 19672]
          Length = 1144

 Score = 73.6 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 50/278 (17%), Positives = 102/278 (36%), Gaps = 28/278 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +A+     S E + SL   KA  + L   G       ++    + LA  +     + +H 
Sbjct: 30  VAI----YSEEDKYSLHRYKADEAYLVGKGLDPISAYMNIDELIDLAIRR---GIDAIHP 82

Query: 61  NFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILV 113
            +G   E        E   I +         +  DK  +K +   C VP+       I+ 
Sbjct: 83  GYGFLAESYEFAEACEKAGIIFVGPKPEVMKVFGDKKLAKDIAKKCKVPIIEGSEDIIVD 142

Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS-----SWNHGDQLLI 168
                     I  P ++K   GG   GI +   ++ +  +   +S     ++  GD ++I
Sbjct: 143 LEDAKKISKSIGYPVLLKATAGGGGRGIRICHNEKELEENFDSASREAIKAFGKGD-III 201

Query: 169 EQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKE 226
           E+Y++    +   ++GD   ++  +            K        + P   IP +  ++
Sbjct: 202 EKYIENPKHIEIQLLGDKHGNIVHLYERDCSIQRRHQKL-----IEIAPSINIPEETLQK 256

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + + +    +A G    + ++FL D      ++LE+N 
Sbjct: 257 LYQNSVDIGKATGLYCAATAEFLVDTKGNH-YFLEVNP 293


>gi|308048190|ref|YP_003911756.1| biotin carboxylase ;acetyl-CoA carboxylase carboxyltransferase
           subunit alpha [Ferrimonas balearica DSM 9799]
 gi|307630380|gb|ADN74682.1| biotin carboxylase ;acetyl-CoA carboxylase carboxyltransferase
           subunit alpha [Ferrimonas balearica DSM 9799]
          Length = 449

 Score = 73.6 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 39/223 (17%), Positives = 77/223 (34%), Gaps = 21/223 (9%)

Query: 56  NVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
             +H  +G   E+      +E     +         L  DK+ +   +   GVP  P   
Sbjct: 76  IAIHPGYGFLAENADFAEQVENSGFIFIGPTADVIRLMGDKVSAINSMKKAGVPCVPGSD 135

Query: 111 ---ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHG 163
                 N   +     I  P +IK   GG   G+ V++ +  +     L   ++ +    
Sbjct: 136 GPLTEDNTRNIQIAKRIGYPVIIKAAGGGGGRGMRVVRSEAELLKSIELTKAEAGAAFGN 195

Query: 164 DQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPL 221
           D + +E++++    +   V+ D       +            K          PA  I  
Sbjct: 196 DTVYMEKFLENPRHIEVQVLADGQGSAIHLGERDCSMQRRHQK-----VVEEAPAPGITE 250

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           ++ K +      A   IG RG    +FL+   + + +++E+N 
Sbjct: 251 EMRKFIGERCAKACVEIGYRGAGTFEFLY--ENGEFYFIEMNT 291


>gi|260061401|ref|YP_003194481.1| Acetyl-CoA carboxylase, biotin carboxylase [Robiginitalea biformata
           HTCC2501]
 gi|88785533|gb|EAR16702.1| Acetyl-CoA carboxylase, biotin carboxylase [Robiginitalea biformata
           HTCC2501]
          Length = 452

 Score = 73.6 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 76/220 (34%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     I    EI +  +         DK  +KQ +   GVP  P    
Sbjct: 77  AIHPGYGFLSENSKFSRICAEHEIKFIGATGDQIDRMGDKASAKQTMKEAGVPTIPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGDQ 165
            +      +     +  P +IK   GG   G+  I K++ +       + ++ +      
Sbjct: 137 LLKDANHALKVAKKMGYPVMIKATAGGGGKGMRAIWKEEELVKQFESAVKEAEAAFGNGG 196

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+ ++    +   V+GD       ++           K     +       +   + 
Sbjct: 197 MYMEKLIEEPRHIEIQVVGDQYGKACHLSERDCSIQRRHQK----LTEETPSPFMTDKLR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             + + A  A + I   G    +FL D   R  +++E+N 
Sbjct: 253 DAMGKAAVRAAEFIKYEGAGTVEFLVDKH-RNFYFMEMNT 291


>gi|226354884|ref|YP_002784624.1| carbamoyl phosphate synthase large subunit [Deinococcus deserti
           VCD115]
 gi|259585678|sp|C1CXR4|CARB_DEIDV RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|226316874|gb|ACO44870.1| putative Carbamoyl-phosphate synthase large chain (Carbamoyl-
           phosphate synthetase ammonia chain) [Deinococcus deserti
           VCD115]
          Length = 1029

 Score = 73.6 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 55/289 (19%), Positives = 102/289 (35%), Gaps = 38/289 (13%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI---------DVD------------RSVGLV 45
           G ++E + S   G     AL   G++V  +         D D              V  +
Sbjct: 21  GQAAEFDYS---GTQALKALRGEGYRVVLVNSNPATIMTDPDLADATYLEPLTPEFVEKI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +A  KPD     L G    +  +    +  LE   +    +G+ A     D+   +  + 
Sbjct: 78  IALEKPDAILPTLGGQTALNLAMELHERGTLEKYGVELIGAGVEAIKKGEDRELFQAAMK 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             GV      +V+     ++ Q  I  P VI+P       G  +    +           
Sbjct: 138 KIGVETARGKMVHSMEEAVEYQKEIGLPIVIRPSFTLGGTGGGIAHTYEEFLAITEGGLR 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPA 217
            +    +L+E+ + G  E    VM D +  V  I   ++    ++       +S  V PA
Sbjct: 198 DSPVTSVLLEESILGWKEYELEVMRDTADTVIIITSIEN----FDPMGVHTGDSITVAPA 253

Query: 218 K-IPLDIYKEVQRLAFLAHQAIG-CRGISRSDFLFDPLSRKVFWLEINV 264
           + +    Y+ ++  +    + IG   G S   F  +P + +V  +E+N 
Sbjct: 254 QTLSDVEYQRLRNQSLAIIREIGVATGGSNIQFAVNPDNGRVIVIEMNP 302


>gi|194755401|ref|XP_001959980.1| GF13141 [Drosophila ananassae]
 gi|190621278|gb|EDV36802.1| GF13141 [Drosophila ananassae]
          Length = 1198

 Score = 73.6 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 31/205 (15%), Positives = 79/205 (38%), Gaps = 16/205 (7%)

Query: 69  QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLI 124
           QA+++   + +            DK+ ++      GVP+ P     +      ++     
Sbjct: 131 QAVID-AGLRFIGPSPKVVQNMGDKVAARVAAIEAGVPIVPGTDGPVTSKEEALEFCRKH 189

Query: 125 SPPYVIKPLKGGSSLGIIVI----KKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTC 179
             P + K   GG   G+ V+    + +++      ++ S      + IE++++    +  
Sbjct: 190 GLPVIFKAAYGGGGRGMRVVRKMEEVEENFERASSEAKSAFGNGAMFIEKFIERPRHIEV 249

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAI 238
            ++GD + +V  +           ++        + PA ++P++I  ++   A    + +
Sbjct: 250 QLLGDKAGNVVHLYE-----RDCSVQRRHQKVVEIAPAPRLPVEIRDKMTEAAVRLAKHV 304

Query: 239 GCRGISRSDFLFDPLSRKVFWLEIN 263
           G       +FL D      +++E+N
Sbjct: 305 GYENAGTVEFLCDENCGNFYFIEVN 329


>gi|126735128|ref|ZP_01750874.1| Propionyl-CoA carboxylase alpha subunit [Roseobacter sp. CCS2]
 gi|126715683|gb|EBA12548.1| Propionyl-CoA carboxylase alpha subunit [Roseobacter sp. CCS2]
          Length = 665

 Score = 73.6 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 73/221 (33%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      L+   + +      A     DK+ SK++     V   P  + 
Sbjct: 77  AVHPGYGFLSENPKFADALDAAGVTFIGPPKGAIEKMGDKITSKKIAQDADVSTVPGYMG 136

Query: 114 NRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGD 164
                +      + +  P +IK   GG   G+ +   D              ++S+   D
Sbjct: 137 LIEDAEEAVKISNQVGYPVMIKASAGGGGKGMRIAWNDDEAREGFQSSKNEAANSFG-DD 195

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           ++ IE++V     +   V+ D   +   +   +        K             +    
Sbjct: 196 RIFIEKFVTQPRHIEIQVLCDGHGNAVYLHERECSIQRRNQK----VIEEAPSPFLDEAT 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            K +   +    QA+G       +F+ D   R  ++LE+N 
Sbjct: 252 RKAMGEQSVALAQAVGYTSAGTVEFIVDG-DRNFYFLEMNT 291


>gi|117164766|emb|CAJ88315.1| putative pyruvate carboxylase [Streptomyces ambofaciens ATCC 23877]
          Length = 1124

 Score = 73.6 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 37/216 (17%), Positives = 75/216 (34%), Gaps = 17/216 (7%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV----CPSILVN 114
           +G   E+  +    E   I +         L+ +K R+       GVPV     PS  V+
Sbjct: 83  YGFLSENPELARACEEAGITFVGPSAHILELTGNKARAVAAAREAGVPVLGSSAPSTDVD 142

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQLLIEQ 170
                ++  +  P  +K + GG   G+  +++   +   +  +S           + +E+
Sbjct: 143 ELVRAAED-VGFPVFVKAVAGGGGRGMRRVEEPAQLREAIEAASREAASAFGDSTVFLEK 201

Query: 171 Y-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQ 228
             V+   +   ++ D   +V              ++        + PA  +   + + + 
Sbjct: 202 AVVEPRHIEVQILADGEGNVI-----HLFERDCSVQRRHQKVIELAPAPNLDPRLRERIC 256

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             A    + IG R     +FL D     VF  E+N 
Sbjct: 257 ADAVNFARQIGYRNAGTVEFLVDREGNHVFI-EMNP 291


>gi|160872652|ref|ZP_02062784.1| acetyl-CoA carboxylase, biotin carboxylase [Rickettsiella grylli]
 gi|159121451|gb|EDP46789.1| acetyl-CoA carboxylase, biotin carboxylase [Rickettsiella grylli]
          Length = 446

 Score = 73.6 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 30/220 (13%), Positives = 73/220 (33%), Gaps = 19/220 (8%)

Query: 58  LHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS---- 110
           +H  +G   E+      ++     +            DK+ +   +    +P  P     
Sbjct: 78  IHPGYGFLSENADFAERVQQSGFVFIGPEPETIRRMGDKVSAIAAMRKAKIPCVPGSEGE 137

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGDQ 165
               ++  +     I  P +IK   GG   GI V+  + ++   +     ++ +      
Sbjct: 138 LENDDKKNLKIAQKIGYPVLIKAAGGGGGRGIRVVHSEAALLSAISLTRSEAEANFKNAS 197

Query: 166 LLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E++ ++   +   V+GD       +            K             I     
Sbjct: 198 VYLEKFLINPRHIEIQVLGDGQGHAVHLGERDCSMQRRHQK----VIEEAPAVGITEKQR 253

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +++  L   A + +  RG    +FL+   +   +++E+N 
Sbjct: 254 QQMGELCVKACRDMNYRGAGTFEFLY--ENGHFYFIEMNT 291


>gi|315640742|ref|ZP_07895844.1| phosphoribosylaminoimidazole carboxylase ATPase subunit PurK
           [Enterococcus italicus DSM 15952]
 gi|315483497|gb|EFU73991.1| phosphoribosylaminoimidazole carboxylase ATPase subunit PurK
           [Enterococcus italicus DSM 15952]
          Length = 367

 Score = 73.6 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 38/204 (18%), Positives = 78/204 (38%), Gaps = 27/204 (13%)

Query: 71  ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTMDSQHLISPPY 128
           +L    IP    G    A++ D++  K  + +  + + P   +       D+   +  P 
Sbjct: 83  LLPEANIPQ---GTDLLAITQDRLLEKSFLEANNIVIAPYATIISPTDIQDAIDSLGYPC 139

Query: 129 VIKPLKGG-SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDAS 186
           V+K  +GG    G  V+K       DL ++ +        +E ++    EL+  V G+ +
Sbjct: 140 VLKTTRGGYDGKGQHVLKSR----ADLAEAMTLLREGTCELEAWIPFEKELSVIVAGNGT 195

Query: 187 ----LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
                 V E     +  Y             + PA+I  ++ +E +R+A    +A+  RG
Sbjct: 196 EYVTFPVAENIHRNNILY-----------QTISPARIADEVAEEAKRVAIDIAEALQLRG 244

Query: 243 ISRSDFLFDPLSRKVFWLEINVQP 266
           +   +         ++  E+  +P
Sbjct: 245 VLTVEMFLTES-GSIYVNELAPRP 267


>gi|225020612|ref|ZP_03709804.1| hypothetical protein CORMATOL_00619 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224946558|gb|EEG27767.1| hypothetical protein CORMATOL_00619 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 593

 Score = 73.6 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 35/222 (15%), Positives = 74/222 (33%), Gaps = 19/222 (8%)

Query: 56  NVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
           N +H  +G   E+G     +    + +      +     DK+ ++ +      P+ P   
Sbjct: 82  NAIHPGYGFLSENGDFAEAVINAGLIWIGPSPQSIRDLGDKVTARHIAQRAKAPMAPGTK 141

Query: 113 VNRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL----DLLQSSSWNHGD 164
                ++           P  IK   GG   G+ V    + +P        ++ +     
Sbjct: 142 EPVKDVNEVVAFAEEFGLPIAIKAAFGGGGRGMKVAYTKEEVPELYESATREALAAFGRG 201

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
           +  +E+Y+D    + C V+ D   +V       +      L+          PA  +  +
Sbjct: 202 ECFVERYMDKARHVECQVLADMHGNVIV-----AGTRDCSLQRRFQKLVEEAPAPFLTEE 256

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
               +   A    +  G  G    ++L D  +  + +LE+N 
Sbjct: 257 QRTTLHESAKRICKEAGYYGAGTVEYLVD-STGLINFLEVNT 297


>gi|147676840|ref|YP_001211055.1| carbamoylphosphate synthase large subunit [Pelotomaculum
           thermopropionicum SI]
 gi|189081831|sp|A5D508|CARB_PELTS RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|146272937|dbj|BAF58686.1| carbamoylphosphate synthase large subunit [Pelotomaculum
           thermopropionicum SI]
          Length = 1083

 Score = 73.6 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 33/232 (14%), Positives = 87/232 (37%), Gaps = 24/232 (10%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           L  L +    + +     + D+ + +++++  G+P                   +  P +
Sbjct: 648 LAALGVNILGTPVEGIDAAEDRDKFEKLLTGLGIPQSEGRSAVNVEEAQAVAEKLGYPVL 707

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS--- 186
           ++P        + +I     +   + ++   +    +L+++Y+ G E+    +GD +   
Sbjct: 708 VRPSYVLGGRAMEIISSKTELVKYMTEAVQVSPRHPVLVDKYIRGKEVEVDAIGDGNDLF 767

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISR 245
           +      + ++  +S        +S  V P + +  +   ++        +A+   G+  
Sbjct: 768 IPGIMEHIERAGVHS-------GDSIAVYPPQTLSREEIDKIVEYTLKIGRALKINGLIN 820

Query: 246 SDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEMAAYA----GYSFREL 288
             ++ D  +  V+ LE+N       P ++ V+  P + A      G S  EL
Sbjct: 821 IQYVVD--NGGVYVLEVNPRASRTVPVLSKVTGVPMVQAATRAMLGRSLAEL 870



 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 53/288 (18%), Positives = 106/288 (36%), Gaps = 37/288 (12%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI---------DVD------------RSVGLV 45
           G ++E + +   G     AL + G  V  +         D+D             SV  +
Sbjct: 21  GQAAEFDYA---GTQACKALREEGVSVVLVNSNPATIMTDLDIADQVYIEPLAWDSVAEI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +A  +PD     L G  G +  V+     +L+   +    + + +   + ++   K ++ 
Sbjct: 78  IARERPDGLLPTLGGQTGLNIAVELSEKGVLQDYGVELLGTPLESIKKAENRELFKNLML 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G PV  S +       +     I  P +++P       G  +  ++Q +     +   
Sbjct: 138 EIGEPVPRSTIAGSVEECLAFAGEIGYPVIVRPAYTLGGTGGGIACREQELVEIAGRGLK 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
            +   Q+L+EQ V G  E+   VM D + + +T   +   D           +S  V P+
Sbjct: 198 MSMIGQVLLEQSVAGWKEIEYEVMRDGADNCITVCNMENVDPVGIHT----GDSIVVAPS 253

Query: 218 K-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +    Y+ ++  A    +A+   G     F  D  S   + +E+N 
Sbjct: 254 QTLSDKEYQLLRSAALRIIRALKVEGGCNVQFALDLNSMAYYVIEVNP 301


>gi|294668433|ref|ZP_06733533.1| hypothetical protein NEIELOOT_00348 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291309586|gb|EFE50829.1| hypothetical protein NEIELOOT_00348 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 454

 Score = 73.6 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 82/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+      +E     +         L  DK+ +KQ +   GVP  P    
Sbjct: 77  AVHPGYGFLAENANFAEQVEQSGFIFIGPRADTIRLMGDKVSAKQAMQEAGVPCVPGSDG 136

Query: 111 -ILVNRFTMDS-QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
            +  +  T+      +  P +IK   GG   G+ V++K++ +   +     ++ +     
Sbjct: 137 ALPDDPETIIKTAAKVGYPVIIKASGGGGGRGMRVVEKEEDLIKSVEMTKAEAGAAFGNP 196

Query: 165 QLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+Y+     +   V+ D   +   +            K          PA  I   
Sbjct: 197 MVYMERYLQRPRHVEIQVLADEHGNAIYLGERDCSMQRRHQK-----VIEEAPAPGITAR 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +++ +    A + IG RG    +FL+     + F++E+N 
Sbjct: 252 EREKIGKACVEACKRIGYRGAGTFEFLY--EDGEFFFIEMNT 291


>gi|289551073|ref|YP_003471977.1| Pyruvate carboxyl transferase [Staphylococcus lugdunensis HKU09-01]
 gi|289180605|gb|ADC87850.1| Pyruvate carboxyl transferase [Staphylococcus lugdunensis HKU09-01]
          Length = 1148

 Score = 73.6 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 32/221 (14%), Positives = 76/221 (34%), Gaps = 20/221 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+           I +    +    +  DK++++    +  +PV P    
Sbjct: 80  AIHPGYGFLSENEHFAHRCHEEGIKFIGPHLDHLDMFGDKVKARTTAINADLPVIPGTDG 139

Query: 114 NRFTMDSQHLI----SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
                +S  +       P +IK   GG   G+ ++++   +     ++ S         +
Sbjct: 140 PIENFESARVFADEAGYPLMIKATSGGGGKGMRIVREANELEDAFHRAKSEAEKSFGNSE 199

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDI 223
           + IE+Y+D    +   V+GD   ++  +           ++        V P   +  ++
Sbjct: 200 VYIERYIDNPKHIEVQVIGDEFGNIVHLYE-----RDCSVQRRHQKVVEVAPSVGLSKEL 254

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             ++   A      I        +FL        +++E+N 
Sbjct: 255 RGKICNAALQLMTKIKYVNAGTVEFLV--SGEDFYFIEVNP 293


>gi|260558127|ref|ZP_05830337.1| acetyl-CoA carboxylase, biotin carboxylase [Acinetobacter baumannii
           ATCC 19606]
 gi|260408400|gb|EEX01708.1| acetyl-CoA carboxylase, biotin carboxylase [Acinetobacter baumannii
           ATCC 19606]
          Length = 646

 Score = 73.6 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 34/198 (17%), Positives = 69/198 (34%), Gaps = 14/198 (7%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD----SQHLISPPYVIK 131
           +I +      A  L   K  SK  +   GVP  P    +R  ++        I  P ++K
Sbjct: 100 QITFIGPTASAIELMGSKRLSKIAMIEAGVPCVPGYEGDRQDLEYLATQAEQIGFPIMVK 159

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSS-----SWNHGDQLLIEQYVDGIELTCGVMGDAS 186
              GG   G+ ++++   +   L  +      ++  G+ +L +  +    +   V GD  
Sbjct: 160 ASAGGGGRGMRLVQQASELFEALQTARSEAENAFGSGELILEKAVIAPRHVEIQVFGDTH 219

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRS 246
            +   +            K             +  ++ +++   A  A +A    G    
Sbjct: 220 GNYVYLFERDCSIQRRHQK----VVEESPCPVMTPELRQQMGEAAVAAAKACAYVGAGTV 275

Query: 247 DFLFDPLSRKVFWLEINV 264
           +FL D      ++LE+N 
Sbjct: 276 EFLLDAS-GAFYFLEMNT 292


>gi|257791419|ref|YP_003182025.1| carbamoyl-phosphate synthase, large subunit [Eggerthella lenta DSM
           2243]
 gi|257475316|gb|ACV55636.1| carbamoyl-phosphate synthase, large subunit [Eggerthella lenta DSM
           2243]
          Length = 1078

 Score = 73.6 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 47/278 (16%), Positives = 94/278 (33%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG      L+  G++V  +         D                V  V+A  +PD    
Sbjct: 29  SGAQACKVLKADGYRVVLVNSNPATIMTDPGLADRTYVEPITVEFVEQVIAKERPDALLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--S 110
            L G  G +  V+     IL    +      + A     D+ +  + ++  G+       
Sbjct: 89  TLGGQTGLNTAVELARAGILAKYGVEMIGCDLEAIERGEDRKQFNECMAKLGIETSRSGY 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                   D    +  P V++P       G  +      +   + Q    +   ++L+E+
Sbjct: 149 AYSIADAEDIVAELGYPVVLRPSFTLGGAGGGIAHDAAELHEIVGQGLELSPAGEVLVEE 208

Query: 171 YVDG-IELTCGVMGDASL-DVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            ++G  E    VM D +   +   ++   D           +S  V PA+ +    Y+ +
Sbjct: 209 SIEGWKEYEMEVMRDRAGNGIIVCSIENFDAMGVHT----GDSITVAPAQTLTDVEYQRM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RAASLAILEKIGVETGGSNVQFAVNPENGRMIVIEMNP 302



 Score = 59.8 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 26/220 (11%), Positives = 77/220 (35%), Gaps = 12/220 (5%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGV--PVCPSILVNRFTMDSQHLISPPYVIKPL 133
            +P   +   A  L+ D+ R   V+   G+  P        +        I  P +++P 
Sbjct: 658 GVPIMGTSPEAIDLAEDRDRFAAVLDELGIVYPAAGMASTYQEACVVADRIGFPLLVRPS 717

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEI 192
                 G+ ++     +   + +++  +    + ++++++G +E+    + D        
Sbjct: 718 YVLGGRGMGIVYDGAQLEKYMAEAAKISPDHPVYLDRFLEGAVEVDLDALCDGEQVFVGG 777

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            +   +       +S  ++    P  +   +  +++ +A      +G  G+    F    
Sbjct: 778 VLEHIEMAGI---HSGDSACCTPPFALSEAVQAQLRAIARRLALRLGVVGLINIQFAI-- 832

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
             + ++ +E N +   T     P  +   G    ++   +
Sbjct: 833 KDQVIYIIEANPRASRT----VPFTSKATGVPLAKVAARI 868


>gi|305679966|ref|ZP_07402776.1| putative pyruvate carboxylase subunit A [Corynebacterium
           matruchotii ATCC 14266]
 gi|305660586|gb|EFM50083.1| putative pyruvate carboxylase subunit A [Corynebacterium
           matruchotii ATCC 14266]
          Length = 593

 Score = 73.6 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 35/222 (15%), Positives = 74/222 (33%), Gaps = 19/222 (8%)

Query: 56  NVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
           N +H  +G   E+G     +    + +      +     DK+ ++ +      P+ P   
Sbjct: 82  NAIHPGYGFLSENGDFAEAVINAGLIWIGPSPQSIRDLGDKVTARHIAQRAKAPMAPGTK 141

Query: 113 VNRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL----DLLQSSSWNHGD 164
                ++           P  IK   GG   G+ V    + +P        ++ +     
Sbjct: 142 EPVKDVNEVVAFAEEFGLPIAIKAAFGGGGRGMKVAYTKEEVPELYESATREALAAFGRG 201

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
           +  +E+Y+D    + C V+ D   +V       +      L+          PA  +  +
Sbjct: 202 ECFVERYMDKARHVECQVLADMHGNVIV-----AGTRDCSLQRRFQKLVEEAPAPFLTEE 256

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
               +   A    +  G  G    ++L D  +  + +LE+N 
Sbjct: 257 QRTTLHESAKRICKEAGYYGAGTVEYLVD-STGLINFLEVNT 297


>gi|168487443|ref|ZP_02711951.1| carbamoyl-phosphate synthase, large subunit [Streptococcus
           pneumoniae CDC1087-00]
 gi|225859069|ref|YP_002740579.1| carbamoyl phosphate synthase large subunit [Streptococcus
           pneumoniae 70585]
 gi|254813604|sp|C1C7Q3|CARB_STRP7 RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|183569715|gb|EDT90243.1| carbamoyl-phosphate synthase, large subunit [Streptococcus
           pneumoniae CDC1087-00]
 gi|225721866|gb|ACO17720.1| carbamoyl-phosphate synthase, large subunit [Streptococcus
           pneumoniae 70585]
          Length = 1058

 Score = 73.6 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 26/228 (11%), Positives = 77/228 (33%), Gaps = 19/228 (8%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--QHLISPPYV 129
           L    +    + +     + D+   +Q +    +P  P          +     I  P +
Sbjct: 646 LAKAGVTILGTQVADLDRAEDRDLFEQALKELDIPQPPGQTATNEEEAALAARKIGFPVL 705

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS--- 186
           ++P        + +++ ++ +   +  +   +    +L++ Y+ G E     + D     
Sbjct: 706 VRPSYVLGGRAMEIVENEEDLRSYMRTAVKASPDHPVLVDSYIVGQECEVDAISDGKDVL 765

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISR 245
           +      + ++  +S        +S  V P + +   + + +          + C G+  
Sbjct: 766 IPGIMEHIERAGVHS-------GDSMAVYPPQTLSQKVQETIADYTKRLAIGLHCLGMMN 818

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
             F+      KV+ +E+N +   T     P ++        ++   ++
Sbjct: 819 IQFVI--KDEKVYVIEVNPRASRT----VPFLSKVTNIPMAQVATKLI 860



 Score = 67.5 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 54/302 (17%), Positives = 114/302 (37%), Gaps = 37/302 (12%)

Query: 20  KACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNVL 58
           +AC S L++ G++V  ++        D+ +                +L    PD     L
Sbjct: 32  QACLS-LKEEGYEVVLVNSNPATIMTDKEIADKVYIEPITLEFVTRILRKEGPDALLPTL 90

Query: 59  HGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
            G  G +  ++     IL+ L +    + + A   + D+   KQ++     P+  S +VN
Sbjct: 91  GGQTGLNMAMELSKNGILDELGVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIVN 150

Query: 115 --RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                +     I  P +++P       G  +   ++ +          +   Q LIE+ +
Sbjct: 151 TVEEAVAFAATIGYPVIVRPAFTLGGTGGGMCANEKELREITENGLKLSPVTQCLIERSI 210

Query: 173 DG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRL 230
            G  E+   VM D++ +   + V   + +   +   + +S    PA+ +     + ++  
Sbjct: 211 AGFKEIEYEVMRDSADNA--LVVCNMENFD-PVGIHTGDSIVFAPAQTMSDYENQMLRDA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    +A+   G        DP S K + +E+N  P ++  S     +   GY   +L  
Sbjct: 268 SLSIIRALKIEGGCNVQLALDPNSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325


>gi|163732251|ref|ZP_02139697.1| carbamoyl-phosphate synthase large subunit [Roseobacter litoralis
           Och 149]
 gi|161394549|gb|EDQ18872.1| carbamoyl-phosphate synthase large subunit [Roseobacter litoralis
           Och 149]
          Length = 1170

 Score = 73.6 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 47/268 (17%), Positives = 104/268 (38%), Gaps = 35/268 (13%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAI---- 71
           AL +AG++   I         D D S  L    L  +    ++     E+G +  +    
Sbjct: 663 ALTEAGYETIMINCNPETVSTDYDTSDRLYFEPLTFEHVMEIMRVEQ-ENGTLHGVIVQF 721

Query: 72  -----------LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTM 118
                      LE   IP   +   A  L+ D+ R +Q+V   G+    + +   +   +
Sbjct: 722 GGQTPLKLANALEEAGIPILGTTPDAIDLAEDRERFQQLVQGLGLKQPKNGIAHSDAEAL 781

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IEL 177
           +    I  P VI+P        + +++   S+   + ++   +    +L++ Y+ G +EL
Sbjct: 782 EIAQEIGFPLVIRPSYVLGGRAMEIVRDQASLERYISEAVVVSGDSPVLLDSYLTGAVEL 841

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELK-YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
               + D     T++ V     +  E   +S  ++  + P  +  +I ++V+   +   +
Sbjct: 842 DVDALSDG----TDVHVAGVMQHIEEAGVHSGDSACSLPPYSLKSEIIEQVKEQTYALAK 897

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINV 264
           A+   G+    F       +++ +E+N 
Sbjct: 898 ALNVVGLMNIQFAV--KDGEIYLIEVNP 923



 Score = 55.1 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 42/291 (14%), Positives = 96/291 (32%), Gaps = 48/291 (16%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G++V  +         D +              V  ++   +PD    
Sbjct: 80  SGAQACKALKEEGYRVILVNSNPATIMTDPELADATYIEPITPEMVAKIIEKERPDALLP 139

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G  G +  +      +L+   +    +   A  ++ D+   ++ +   G+    + +
Sbjct: 140 TMGGQTGLNTSLALEEMGVLDKFNVEMIGAKREAIEMAEDRKLFREAMDRLGIENPKAAI 199

Query: 113 VN---------------RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
           V                R  ++    +  P +I+P       G  V              
Sbjct: 200 VTAPKDAKGKKDLAEGVRLALEILEEVGLPAIIRPAFTMGGTGGGVAYNRDDYEAICRSG 259

Query: 158 SSWNHGDQLLIEQYVDG-IELTCGVMGDASL-DVTEIAVPKSDFYSYELKYSSLNSTHVL 215
              +   Q+L+++ + G  E    V+ D +   +   ++   D           +S  V 
Sbjct: 260 MDASPVGQILVDESLLGWKEFEMEVVRDTADNAIIVCSIENVDPMGVHT----GDSITVA 315

Query: 216 PA-KIPLDIYKEVQRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           PA  +    Y+ ++  +    + IG   G S   +  +P   ++  +E+N 
Sbjct: 316 PALTLTDKEYQIMRNHSIAVLREIGVETGGSNVQWAVNPADGRMVVIEMNP 366


>gi|33864531|ref|NP_896091.1| phosphoribosylglycinamide formyltransferase 2 [Prochlorococcus
           marinus str. MIT 9313]
 gi|81576601|sp|Q7V3S4|PURT_PROMM RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|33641311|emb|CAE22441.1| GAR transformylase 2 [Prochlorococcus marinus str. MIT 9313]
          Length = 388

 Score = 73.6 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 39/246 (15%), Positives = 95/246 (38%), Gaps = 28/246 (11%)

Query: 32  KVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAI--LELLEIPYTHSGILASAL 89
           +V  ++   ++  ++ H +PD+    +         V A+  LE   I        A+A+
Sbjct: 50  EVLDMNNSEALTAIIRHHQPDVVIPEIEAL-----AVNALAELENEGITVI-PTARATAI 103

Query: 90  SMDKMRSKQVVSS-CGVPVCPSILVNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           +M++ R + + S+   +                +   +  P V+KP+   S  G  V+  
Sbjct: 104 TMNRDRIRDLASAELALLTPKFAYAGSAEELKHAAEPLGWPVVVKPVMSSSGKGQSVVSN 163

Query: 147 DQSIPLD--LLQSSSWNHGDQLLIEQYVDGIELTCGVM----GDASLDVTEIAVPKSDFY 200
            + +        + S  +  ++++E+++   +L   ++     D S    E    +    
Sbjct: 164 PEGLRQAWQAAMAGSRGNSPRVIVEEFLH-FDLEITLLTIRQEDGSTLFCEPIGHEQIGG 222

Query: 201 SYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260
            Y+  +         PA++  +  K+ Q +A    + +G  G+   +F       +V + 
Sbjct: 223 DYQCSW--------QPAELSTEQLKQAQSMALTITKNLGGVGLFGVEFFL--CGNEVIFS 272

Query: 261 EINVQP 266
           E++ +P
Sbjct: 273 ELSPRP 278


>gi|17228794|ref|NP_485342.1| phosphoribosylglycinamide formyltransferase 2 [Nostoc sp. PCC 7120]
 gi|81772437|sp|Q8YXB6|PURT_ANASP RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|17130646|dbj|BAB73256.1| phosphoribosylglycinamide formyltransferase 2 [Nostoc sp. PCC 7120]
          Length = 391

 Score = 73.6 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 44/240 (18%), Positives = 91/240 (37%), Gaps = 25/240 (10%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
             +  V+   +PD     +     E   +Q   E   I        A+  +M++ R +++
Sbjct: 61  DDLEAVVTKYEPDFIIPEIEAIRTE--KLQE-FEDRGITVI-PTAAATNYTMNRDRIREL 116

Query: 100 V-SSCGVPVCPS-ILVNRFTMDS-QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
                G+        V    + +    I  P V+KP+   S  G  V+   + +      
Sbjct: 117 AHEELGIRTAKYGYAVTLEELIAVSDNIGFPNVVKPVMSSSGKGQSVVATKEEVEKAWDY 176

Query: 157 SSSWNHGD--QLLIEQYVD-GIELTCGVMGDASLDVTEIAV--PKSDFYSYELKYSSLNS 211
           + + + GD  ++++E++++  IE+T   +   +      +    + +   Y+  +     
Sbjct: 177 AIANSRGDSQKVIVEEFINFEIEITLLTIKQWNAPTIFCSPIGHRQERGDYQESW----- 231

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP---GM 268
               PA I  D   E Q +A     A+G  GI   +F       +V + E++ +P   GM
Sbjct: 232 ---QPAGISEDKILEAQAIAKTVTDALGGAGIFGVEFFITK--DEVIFSELSPRPHDTGM 286


>gi|322391730|ref|ZP_08065197.1| carbamoyl-phosphate synthase, large subunit [Streptococcus peroris
           ATCC 700780]
 gi|321145440|gb|EFX40834.1| carbamoyl-phosphate synthase, large subunit [Streptococcus peroris
           ATCC 700780]
          Length = 1058

 Score = 73.6 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 26/228 (11%), Positives = 76/228 (33%), Gaps = 19/228 (8%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYV 129
           L    +    + +     + D+   +Q +    +P  P            +   I  P +
Sbjct: 646 LAKAGVTILGTQVADLDRAEDRDLFEQALKDLDIPQPPGQTATNEEEAVLAASKIGFPVL 705

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS--- 186
           ++P        + +++ ++ +   +  +   +    +L++ Y+ G E     + D     
Sbjct: 706 VRPSYVLGGRAMEIVENEEDLRSYMRTAVKASPDHPVLVDSYIVGQECEVDAISDGQNVL 765

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISR 245
           +      + ++  +S        +S  V P + +   +   +          + C G+  
Sbjct: 766 IPGIMEHIERAGVHS-------GDSMAVYPPQTLSQKVQDTIADYTKRLAIGLNCLGMMN 818

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
             F+      KV+ +E+N +   T     P ++        ++   ++
Sbjct: 819 IQFVI--KDEKVYVIEVNPRASRT----VPFLSKVTNIPMAQVATKLI 860



 Score = 69.4 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 54/302 (17%), Positives = 114/302 (37%), Gaps = 37/302 (12%)

Query: 20  KACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNVL 58
           +AC S L++ G++V  ++        D+ +                +L   +PD     L
Sbjct: 32  QACLS-LKEEGYEVVLVNSNPATIMTDKEIADKVYIEPITLEFVTRILRKERPDALLPTL 90

Query: 59  HGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
            G  G +  ++     IL+ L +    + + A   + D+   KQ++     P+  S +VN
Sbjct: 91  GGQTGLNMAMELSKNGILDELGVELLGTKLSAIDQAEDRDLFKQLMEELKQPIPESEIVN 150

Query: 115 --RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                +     I  P +++P       G  +   +  +          +   Q LIE+ +
Sbjct: 151 TVEGAVAFAATIGYPVIVRPAFTLGGTGGGMCANEAELREIAENGLKLSPVTQCLIERSI 210

Query: 173 DG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRL 230
            G  E+   VM D++ +   + V   + +   +   + +S    PA+ +     + ++  
Sbjct: 211 AGFKEIEYEVMRDSADNA--LVVCNMENFD-PVGIHTGDSIVFAPAQTMSDYENQMLRDA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    +A+   G        DP S K + +E+N  P ++  S     +   GY   +L  
Sbjct: 268 SLSIIRALKIEGGCNVQLALDPHSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325


>gi|126739202|ref|ZP_01754896.1| propionyl-CoA carboxylase, alpha subunit [Roseobacter sp.
           SK209-2-6]
 gi|126719819|gb|EBA16527.1| propionyl-CoA carboxylase, alpha subunit [Roseobacter sp.
           SK209-2-6]
          Length = 682

 Score = 73.6 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 77/221 (34%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      L    + +    + A     DK+ SK++    GV   P  + 
Sbjct: 77  AVHPGYGFLSENSKFAEALAAESVAFVGPPVGAIESMGDKITSKKIAQEAGVSTVPGYMG 136

Query: 114 NRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGD 164
                +      + I  P +IK   GG   G+ +   D+             ++S+   D
Sbjct: 137 LIEDAEEAVKISNEIGYPVMIKASAGGGGKGMRIAWNDEEAREGFQSSKNEAANSFG-DD 195

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           ++ IE++V     +   V+ DA  +   +   +        K             +  + 
Sbjct: 196 RIFIEKFVTQPRHIEIQVLCDAHGNGIYLNERECSIQRRNQK----VVEEAPSPFLDEET 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            K +   +    +A+G       +F+ D   +  ++LE+N 
Sbjct: 252 RKAMGEQSVALAKAVGYTSAGTVEFIVDG-DKNFYFLEMNT 291


>gi|160899191|ref|YP_001564773.1| acetyl-CoA carboxylase, biotin carboxylase [Delftia acidovorans
           SPH-1]
 gi|160364775|gb|ABX36388.1| acetyl-CoA carboxylase, biotin carboxylase [Delftia acidovorans
           SPH-1]
          Length = 682

 Score = 73.6 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 41/220 (18%), Positives = 77/220 (35%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+      +E   I +      A A   DK+ SK++    GV   P    
Sbjct: 77  AVHPGYGFLSENEAFARRVEEEGITFIGPKHAAIAAMGDKIASKKLADKAGVSTIPGYND 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
            I      ++    I  P +IK   GG   G+ V   D+           ++ +    D+
Sbjct: 137 PIAGPEAAVEIAKGIGYPVMIKASAGGGGKGLRVAYNDKEAFEGFASCQNEARNSFGDDR 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE++V +   +   V+GD   +V  +   +        K             I     
Sbjct: 197 IFIEKFVQEPRHIEIQVLGDGHGNVIYLNERECSIQRRHQK----VIEEAPSPFISDATR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +   A    +A+G +     +F      +  ++LE+N 
Sbjct: 253 RAMGEQAVALAKAVGYQSAGTVEF-VVGKDQDFYFLEMNT 291


>gi|82703865|ref|YP_413431.1| acetyl-CoA carboxylase, biotin carboxylase [Nitrosospira
           multiformis ATCC 25196]
 gi|82411930|gb|ABB76039.1| acetyl-CoA carboxylase, biotin carboxylase [Nitrosospira
           multiformis ATCC 25196]
          Length = 452

 Score = 73.6 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 39/223 (17%), Positives = 81/223 (36%), Gaps = 23/223 (10%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+      +E     +         L  DK+ +K  +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAERVEKSGFVFIGPRPETIRLMGDKVSAKNAMKKAGVPCVPGSDG 136

Query: 111 ---ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHG 163
                V+     ++  I  P +IK   GG   G+ V+  + ++   ++    ++ +    
Sbjct: 137 GLPESVDEIKAIARA-IGYPIIIKAAAGGGGRGMRVVHTEAALSNAVIITRNEAQAAFGN 195

Query: 164 DQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPL 221
             +  E+Y++    +   V+ D   +   +            +          PA  IP 
Sbjct: 196 PTVYAEKYLENPRHIEFQVLADEHRNAIYLGE-----RDCSTQRRHQKIIEEAPALGIPP 250

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +   +      A + IG RG+   +FLF+    + +++E+N 
Sbjct: 251 RLRDRMGTRCVDACKRIGYRGVGTFEFLFEK--NEFYFIEMNT 291


>gi|330961411|gb|EGH61671.1| pyruvate carboxylase subunit A [Pseudomonas syringae pv. maculicola
           str. ES4326]
          Length = 488

 Score = 73.6 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 77/221 (34%), Gaps = 20/221 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            LH  +G   E+  +  I     + +            DK  +++ +   GVPV P    
Sbjct: 93  ALHPGYGFLSENAELADICAERGVKFIGPSAEVIRRMGDKTEARRSMIKAGVPVTPGTEG 152

Query: 114 NRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGD 164
           N   ++        I  P ++K   GG   GI      + +           + ++   +
Sbjct: 153 NVADIEEALVEGERIGYPVMLKATSGGGGRGIRRCNSREELEQAFPRVISEATKAFGSAE 212

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDI 223
             L +  V+   +   ++GD+  +V  +            K        + P  ++  + 
Sbjct: 213 VFLEKCIVNPKHIEAQILGDSFGNVVHLFERDCSIQRRNQKL-----IEIAPSPQLTPEQ 267

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              +  L+  A +A+G       +FL      +V+++E+N 
Sbjct: 268 RAYIGDLSVRAAKAVGYENAGTVEFLL--AEGEVYFMEMNT 306


>gi|330878137|gb|EGH12286.1| pyruvate carboxylase subunit A [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 471

 Score = 73.6 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 77/221 (34%), Gaps = 20/221 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            LH  +G   E+  +  I     + +            DK  +++ +   GVPV P    
Sbjct: 76  ALHPGYGFLSENAELADICAERGVKFIGPSAEVIRRMGDKTEARRSMIKAGVPVTPGTEG 135

Query: 114 NRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGD 164
           N   ++        I  P ++K   GG   GI      + +           + ++   +
Sbjct: 136 NVADIEEALVEGERIGYPVMLKATSGGGGRGIRRCNSREELEQAFPRVISEATKAFGSAE 195

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDI 223
             L +  V+   +   ++GD+  +V  +            K        + P  ++  + 
Sbjct: 196 VFLEKCIVNPKHIEAQILGDSFGNVVHLFERDCSIQRRNQKL-----IEIAPSPQLTPEQ 250

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              +  L+  A +A+G       +FL      +V+++E+N 
Sbjct: 251 RAYIGDLSVRAAKAVGYENAGTVEFLL--AEGEVYFMEMNT 289


>gi|304315132|ref|YP_003850279.1| carbamoyl-phosphate synthase, large subunit [Methanothermobacter
           marburgensis str. Marburg]
 gi|302588591|gb|ADL58966.1| carbamoyl-phosphate synthase, large subunit [Methanothermobacter
           marburgensis str. Marburg]
          Length = 1059

 Score = 73.6 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 50/286 (17%), Positives = 97/286 (33%), Gaps = 35/286 (12%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQIDVDRS---------------------VGLV 45
           G ++E + S   G     +L + G +   ++ + +                     V  +
Sbjct: 21  GQAAEFDYS---GSQACKSLREEGIETVLVNSNPATIQTDMEMADRVYVEPLTPEIVAKI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQAILE---LLEIPYTHSGILASALSMDKMRSKQVVSS 102
           +   KPD     + G  G +     + E   L  +    S I       D+      +  
Sbjct: 78  IEKEKPDAVLPTMGGQTGLNVAT-GLAEIGALEGVRVIGSSIETIRNVEDRDLFDSFMKR 136

Query: 103 CGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160
              PV  +  VN     +++   I  P +++P       G  V      +     +    
Sbjct: 137 LNEPVPAARAVNSVEEALEAVDEIGYPVIVRPAFTLGGTGGGVAHNRDELIEIATRGLEM 196

Query: 161 NHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK- 218
           +  +Q+LI+Q V G  E    VM D +   T I V   +     +   +  S  V PA+ 
Sbjct: 197 SFINQVLIDQSVLGWKEFEYEVMRDRND--TCIIVCNMENID-PMGIHTGESVVVAPAQT 253

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +  +  + ++  A    +A+   G     F   P + +   +E+N 
Sbjct: 254 LSDEDNQRLRDAAIKIIRALRIEGGCNIQFAVHPETGEYKVIEVNP 299



 Score = 62.1 bits (150), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 34/226 (15%), Positives = 85/226 (37%), Gaps = 13/226 (5%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYVIKPL 133
            +    +   +     D+ R  +V+   G+P  P  +   F    +    I  P +++P 
Sbjct: 642 GVRILGTPHESIDRVEDRERFTRVLDKLGIPQAPYGIAKSFEDAREVAERIGYPVLVRPS 701

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEI 192
                  + ++  ++ +   + ++   +    +L+++++ D IE+    + D +      
Sbjct: 702 YVLGGRAMEIVYDERELEEYMKEAVRVSPEHPILVDKFLEDAIEVDVDALSDGTGVYIGG 761

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
            +   +    E    S +S  V+P + IP +I + ++         +   G+    +   
Sbjct: 762 IMEHIE----EAGVHSGDSACVIPPQSIPQEIIETIKDYTRKLALELDVVGLINIQYAVK 817

Query: 252 PLSRK-VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           P S   V+ LE N +   T     P ++   G    ++   ++  A
Sbjct: 818 PDSEPAVYILEANPRASRT----VPFVSKATGVPLAKIAARLMMGA 859


>gi|237801770|ref|ZP_04590231.1| pyruvate carboxylase subunit A [Pseudomonas syringae pv. oryzae
           str. 1_6]
 gi|237806708|ref|ZP_04593412.1| pyruvate carboxylase subunit A [Pseudomonas syringae pv. oryzae
           str. 1_6]
 gi|331024629|gb|EGI04685.1| pyruvate carboxylase subunit A [Pseudomonas syringae pv. oryzae
           str. 1_6]
 gi|331027822|gb|EGI07877.1| pyruvate carboxylase subunit A [Pseudomonas syringae pv. oryzae
           str. 1_6]
          Length = 471

 Score = 73.6 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 77/221 (34%), Gaps = 20/221 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            LH  +G   E+  +  I     I +            DK  +++ +   GVPV P    
Sbjct: 76  ALHPGYGFLSENAELADICAERGIKFIGPSAEVIRRMGDKTEARRSMIKAGVPVTPGTEG 135

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGD 164
            +   +  +     I  P ++K   GG   GI      + +           + ++   +
Sbjct: 136 NVADIQEALVEGERIGYPVMLKATSGGGGRGIRRCNSREELEQAFPRVISEATKAFGSAE 195

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDI 223
             L +  V+   +   ++GD+  +V  +            K        + P  ++  + 
Sbjct: 196 VFLEKCIVNPKHIEAQILGDSFGNVVHLFERDCSIQRRNQKL-----IEIAPSPQLTPEQ 250

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              +  L+  A +A+G       +FL      +V+++E+N 
Sbjct: 251 RAYIGDLSVRAAKAVGYENAGTVEFLL--AEGEVYFMEMNT 289


>gi|222153603|ref|YP_002562780.1| acetyl-CoA carboxylase biotin carboxylase subunit [Streptococcus
           uberis 0140J]
 gi|222114416|emb|CAR43201.1| biotin carboxylase subunit of acetyl-CoA carboxylase [Streptococcus
           uberis 0140J]
          Length = 454

 Score = 73.6 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 73/220 (33%), Gaps = 16/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  FG   E+     + E + I +            DK+ ++  +   GVPV P    
Sbjct: 77  AIHPGFGFLSENSKFATMCEEMNIKFIGPSAQTMDKMGDKINARAEMIKAGVPVIPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL----DLLQSSSWNHGDQ 165
            I            +  P ++K   GG   GI  +     +         ++ S      
Sbjct: 137 EIFSAEEARAVAERVGYPIMLKASAGGGGKGIRKVNTASELEESFSSASQEALSAFGNGA 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+ +     +   ++GD+   V  +         +  K             I   + 
Sbjct: 197 MYVEKVIYPARHIEVQILGDSQGHVIHLGERDCSLQRHNQKVL----EESPSIAIGTSLR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            E+   A  A +A+        +FL D  S K +++E+N 
Sbjct: 253 TEMGDAAVKAAKAVSYENAGTIEFLLDEASGKFYFMEMNT 292


>gi|194434563|ref|ZP_03066821.1| carbamoyl-phosphate synthase, large subunit [Shigella dysenteriae
           1012]
 gi|194417216|gb|EDX33327.1| carbamoyl-phosphate synthase, large subunit [Shigella dysenteriae
           1012]
 gi|320179591|gb|EFW54540.1| Carbamoyl-phosphate synthase large chain [Shigella boydii ATCC
           9905]
 gi|332095318|gb|EGJ00341.1| carbamoyl-phosphate synthase large chain [Shigella boydii 5216-82]
 gi|332097825|gb|EGJ02798.1| carbamoyl-phosphate synthase large chain [Shigella dysenteriae
           155-74]
          Length = 1073

 Score = 73.6 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 98/278 (35%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D +              V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +    Q +LE   +    +   A   + D+ R    +   G+    S +
Sbjct: 89  TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGI 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     +     +  P +I+P       G  +    +       +  + +   +LLI++
Sbjct: 149 AHTMEEALAVAADVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLALSPTKELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + +   +   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIEN----FDAMGIHTGDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RNASMAVLREIGVETGGSNVQFAVNPKNGRLIVIEMNP 302



 Score = 60.5 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 30/197 (15%), Positives = 74/197 (37%), Gaps = 10/197 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYV 129
           LE   +P   +   A   + D+ R +  V    +    +  V    M  +    I  P V
Sbjct: 654 LEAAGVPVIGTSPDAIDRAEDRERFQHAVERLKLKQPANATVTAIEMAVEKAKEIGYPLV 713

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  +  +      + S ++   +L++ ++ D +E+    + D  + 
Sbjct: 714 VRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDDAVEVDVDAICDGEMV 773

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           +    +   +    +    S +S   LPA  +  +I   +++        +  RG+    
Sbjct: 774 LIGGIMEHIE----QAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRGLMNVQ 829

Query: 248 FLFDPLSRKVFWLEINV 264
           F     + +V+ +E+N 
Sbjct: 830 FAV--KNNEVYLIEVNP 844


>gi|184159524|ref|YP_001847863.1| acetyl/propionyl-CoA carboxylase subunit alpha [Acinetobacter
           baumannii ACICU]
 gi|332873483|ref|ZP_08441434.1| putative acetyl-CoA carboxylase, biotin carboxylase subunit
           [Acinetobacter baumannii 6014059]
 gi|183211118|gb|ACC58516.1| Acetyl/propionyl-CoA carboxylase, alpha subunit [Acinetobacter
           baumannii ACICU]
 gi|322509436|gb|ADX04890.1| Biotin carboxyl carrier protein [Acinetobacter baumannii 1656-2]
 gi|323519457|gb|ADX93838.1| Acetyl/propionyl-CoA carboxylase, alpha subunit [Acinetobacter
           baumannii TCDC-AB0715]
 gi|332738308|gb|EGJ69184.1| putative acetyl-CoA carboxylase, biotin carboxylase subunit
           [Acinetobacter baumannii 6014059]
          Length = 646

 Score = 73.6 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 34/198 (17%), Positives = 69/198 (34%), Gaps = 14/198 (7%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD----SQHLISPPYVIK 131
           +I +      A  L   K  SK  +   GVP  P    +R  ++        I  P ++K
Sbjct: 100 QITFIGPTASAIELMGSKRLSKIAMIEAGVPCVPGYEGDRQDLEYLATQAEQIGFPIMVK 159

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSS-----SWNHGDQLLIEQYVDGIELTCGVMGDAS 186
              GG   G+ ++++   +   L  +      ++  G+ +L +  +    +   V GD  
Sbjct: 160 ASAGGGGRGMRLVQQASELFEALQTARSEAENAFGSGELILEKAVIAPRHVEIQVFGDTH 219

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRS 246
            +   +            K             +  ++ +++   A  A +A    G    
Sbjct: 220 GNYVYLFERDCSIQRRHQK----VVEEAPCPVMTPELRQKMGEAAVAAAKACAYVGAGTV 275

Query: 247 DFLFDPLSRKVFWLEINV 264
           +FL D      ++LE+N 
Sbjct: 276 EFLLDAS-GAFYFLEMNT 292


>gi|148994086|ref|ZP_01823426.1| carbamoyl phosphate synthase large subunit [Streptococcus
           pneumoniae SP9-BS68]
 gi|147927439|gb|EDK78468.1| carbamoyl phosphate synthase large subunit [Streptococcus
           pneumoniae SP9-BS68]
          Length = 1058

 Score = 73.6 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 26/228 (11%), Positives = 77/228 (33%), Gaps = 19/228 (8%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--QHLISPPYV 129
           L    +    + +     + D+   +Q +    +P  P          +     I  P +
Sbjct: 646 LAKAGVTILGTQVADLDRAEDRDLFEQALKELDIPQPPGQTATNEEEAALAARKIGFPVL 705

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS--- 186
           ++P        + +++ ++ +   +  +   +    +L++ Y+ G E     + D     
Sbjct: 706 VRPSYVLGGRAMEIVENEEDLRSYMRTAVKASPDHPVLVDSYIVGQECEVDAISDGKNVL 765

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISR 245
           +      + ++  +S        +S  V P + +   + + +          + C G+  
Sbjct: 766 IPGIMEHIERAGVHS-------GDSMAVYPPQTLSQKVQETIADYTKRLAIGLHCLGMMN 818

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
             F+      KV+ +E+N +   T     P ++        ++   ++
Sbjct: 819 IQFVI--KDEKVYVIEVNPRASRT----VPFLSKVTNIPMAQVATKLI 860



 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 54/302 (17%), Positives = 115/302 (38%), Gaps = 37/302 (12%)

Query: 20  KACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNVL 58
           +AC S L++ G++V  ++        D+ +                +L    PD     L
Sbjct: 32  QACLS-LKEEGYEVVLVNSNPATIMTDKEIADKVYIEPITLEFVTRILRKEGPDALLPTL 90

Query: 59  HGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
            G  G +  ++     IL+ L +    + + A   + D+   KQ++     P+  S +VN
Sbjct: 91  GGQTGLNMAMELSKNGILDELGVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIVN 150

Query: 115 --RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                +     I  P +++P       G  +   ++ +          +   Q LIE+ +
Sbjct: 151 TVEEAVAFAATIGYPVIVRPAFTLGGTGGGMCANEKELREITENGLKLSPVTQCLIERSI 210

Query: 173 DG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRL 230
            G  E+   VM D++ +   + V   + +   +   + +S    PA+ +     + ++  
Sbjct: 211 AGFKEIEYEVMRDSADNA--LVVCNMENFD-PVGIHTGDSIVFAPAQTMSDYENQMLRDA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    +A+   G        DP+S K + +E+N  P ++  S     +   GY   +L  
Sbjct: 268 SLSIIRALKIEGGCNVQLALDPISFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325


>gi|121597735|ref|YP_990495.1| acetyl-CoA carboxylase biotin carboxylase subunit [Burkholderia
           mallei SAVP1]
 gi|238561871|ref|ZP_04609785.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Burkholderia
           mallei GB8 horse 4]
 gi|251766809|ref|ZP_02265038.2| acetyl-CoA carboxylase, biotin carboxylase subunit [Burkholderia
           mallei PRL-20]
 gi|254203419|ref|ZP_04909780.1| acetyl-CoA carboxylase, biotin carboxylase [Burkholderia mallei
           FMH]
 gi|254205299|ref|ZP_04911652.1| acetyl-CoA carboxylase, biotin carboxylase [Burkholderia mallei
           JHU]
 gi|121225533|gb|ABM49064.1| putative acetyl-CoA carboxylase, biotin carboxylase [Burkholderia
           mallei SAVP1]
 gi|147745658|gb|EDK52737.1| acetyl-CoA carboxylase, biotin carboxylase [Burkholderia mallei
           FMH]
 gi|147754885|gb|EDK61949.1| acetyl-CoA carboxylase, biotin carboxylase [Burkholderia mallei
           JHU]
 gi|238523683|gb|EEP87120.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Burkholderia
           mallei GB8 horse 4]
 gi|243064743|gb|EES46929.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Burkholderia
           mallei PRL-20]
          Length = 484

 Score = 73.6 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 77/220 (35%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+    A +E   + +        A   DK R+++     GVP  P    
Sbjct: 95  AIHPGYGFLSENADFAAQVEAAGLIFVGPPARVIATMGDKARARETARRAGVPTVPGSEG 154

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK----DQSIPLDLLQSSSWNHGDQ 165
            +       +    I  P +IK   GG   GI V          +PL   ++ +      
Sbjct: 155 VVASLDGAHEVAARIGYPVMIKAAAGGGGRGIRVAHDAAQLAAQLPLAQREAQAAFGDGG 214

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+++     +   ++GD   +V  +   +        K             +   + 
Sbjct: 215 VYLERFIARARHIEVQILGDGE-NVIHLFERECSLQRRRQKIL----EEAPSPSLTPALR 269

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +   A    + +G RG    ++LFD    + +++E+N 
Sbjct: 270 DALCASATRLARQVGYRGAGTLEYLFDDARGEFYFIEMNT 309


>gi|312143545|ref|YP_003994991.1| pyruvate carboxylase [Halanaerobium sp. 'sapolanicus']
 gi|311904196|gb|ADQ14637.1| pyruvate carboxylase [Halanaerobium sp. 'sapolanicus']
          Length = 1143

 Score = 73.6 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 78/221 (35%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+       +  +I +            DK++SK + +  GVP  P    
Sbjct: 81  AIHPGYGFLAENPDFVRKCKEADIKFIGPDAEIMDKLGDKIKSKILANKLGVPTIPGLER 140

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL---DLLQSSSWNHG-DQ 165
            I   +   D     + P ++K   GG   G+ +++ D  +     D  + +    G + 
Sbjct: 141 PIKKEQEIKDFAEKNNYPLMLKAAAGGGGRGMRIVRSDDELLESFRDAREEARKAFGVED 200

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDI 223
           + +E+Y++    +   ++GD   ++  +            K          PA  +    
Sbjct: 201 IFVEKYLENPKHIEVQILGDEHGNIVHLYERDCSIQRRHQK-----IIEFTPAISLSDKK 255

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             E+   A    +    +     +FL D      +++E+N 
Sbjct: 256 RNEILEDALKLCKGANYKNAGTVEFLVDKYDNH-YFIEVNP 295


>gi|255692931|ref|ZP_05416606.1| putative carbamoyl-phosphate synthase [Bacteroides finegoldii DSM
           17565]
 gi|260621242|gb|EEX44113.1| putative carbamoyl-phosphate synthase [Bacteroides finegoldii DSM
           17565]
          Length = 369

 Score = 73.6 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 46/233 (19%), Positives = 98/233 (42%), Gaps = 14/233 (6%)

Query: 31  FKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
           + +S +D ++   +        +  N L         V  +L+L  IPY       +  +
Sbjct: 46  YDISIVDKEQIAVICQKEKINGIISNALEIAVPTAAYVAELLDLNGIPY-----EVALNA 100

Query: 91  MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150
            +K + ++ VS       P+  + +           P ++KP+ G  S G+  + K + +
Sbjct: 101 RNKFQMREKVSHQKACQQPTYTLYQSGYLPS---FYPVIVKPIDGSCSNGVTKVNKREDL 157

Query: 151 PLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLN 210
              L ++S  +  + +LIE+Y++G E++   +   S         K    +    Y  + 
Sbjct: 158 TQALNRASQASLANCILIEEYIEGKEVSVESISFHSKHYVLTITDKE---TTGAPY-FVE 213

Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEI 262
           + H  P+ + LDI ++++        AIG   G S ++F  D  +  +F++E+
Sbjct: 214 TAHHQPSTLSLDIQEKLKYATCNILNAIGINNGASHTEFKID-QNGNIFFIEV 265


>gi|90413377|ref|ZP_01221370.1| acetyl-CoA carboxylase [Photobacterium profundum 3TCK]
 gi|90325619|gb|EAS42088.1| acetyl-CoA carboxylase [Photobacterium profundum 3TCK]
          Length = 447

 Score = 73.6 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 80/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      +E     +         +  DK+ +   +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAEQVERSGFIFVGPKAETIRMMGDKVSAITAMKKAGVPCVPGSDG 136

Query: 114 NRFTMDS-----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
                ++        I  P +IK   GG   G+ V++ +  +   +     ++ S+ + D
Sbjct: 137 PLDDDEARNKSFAKRIGFPVIIKASGGGGGRGMRVVRTEAELTEAIAMTRAEAKSFFNND 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E++++    +   +M D   +   +            K          PA  I  +
Sbjct: 197 VVYMEKFLENPRHIEVQIMADGQGNAIHLGERDCSMQRRHQK-----VVEEAPAPGITEE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + K +      A   IG RG    +FL+   + + +++E+N 
Sbjct: 252 MRKYIGERCTRACIEIGYRGAGTFEFLY--ENGEFYFIEMNT 291


>gi|28572557|ref|NP_789337.1| carbamoyl-phosphate synthase large chain [Tropheryma whipplei
           TW08/27]
 gi|28410689|emb|CAD67075.1| carbamoyl-phosphate synthase large chain [Tropheryma whipplei
           TW08/27]
          Length = 1103

 Score = 73.6 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 51/278 (18%), Positives = 96/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVDRS------------VGLVLAHLKPDLAFN 56
           SG      L++ G +V  +         D + S            +  +L   +PD    
Sbjct: 29  SGTQACRVLKEEGIRVILLNSNPATIMTDPEFSDATYIEPMTIEVLEAILDKERPDAVLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G    +  +Q     +LE        +     A   ++   + +V S G  V  S +
Sbjct: 89  TLGGQTALNLAMQLHNKGLLEKYGTQLIGATPEVIARGENREMFRHIVLSSGAEVATSEV 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +        P VI+P      LG  ++  +  +   + Q    +   Q+L+E+
Sbjct: 149 ITSVEGAVLFAQKNGYPLVIRPSYTMGGLGSSLVHTESELVDSVKQGIEASPNGQVLLEE 208

Query: 171 YVDG-IELTCGVMGDASL-DVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            + G  E    +M D +   V   ++   D           +S  V PA  +    Y+ +
Sbjct: 209 SIVGWKEYELELMRDVAGNTVIVCSIENIDPVGVHT----GDSVTVAPAMTLTDREYQNL 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           + +A    + IG   G     F  +P   +V  +E+N 
Sbjct: 265 RNIAIAIIRMIGINTGGCNIQFAVNPTDGRVVVIEVNP 302



 Score = 50.9 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 33/221 (14%), Positives = 77/221 (34%), Gaps = 14/221 (6%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYVIKPL 133
            IP   +   +  L+ ++     ++ S  +P      V+       + + +  P +++P 
Sbjct: 663 GIPILGTSPESIDLAENRDLFSNLLRSLNLPTYEHRTVSNKDEAIIAANKMGFPVLLRPS 722

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTC-GVMGDASLDVTE 191
                 G+ VI   Q++        + +    LLI++++ D IE+    +     L +  
Sbjct: 723 FVLGGRGMKVIHDSQALEDYFNTFHAVDSEHPLLIDKFLSDAIEVDVDALYDKHELFIGG 782

Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
           I     +   +    S  +S  + P  +  +I  ++        + +   G     F   
Sbjct: 783 IMEHIEEAGIH----SGDSSCTIPPVTLGKNIVNQIVSTTHAIARTLSVLGPVNIQFAI- 837

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
             S  ++ LE N +   T     P ++   G    +    +
Sbjct: 838 -ASGILYVLEANPRSSRT----LPFVSKATGIPLAKAATRI 873


>gi|28493332|ref|NP_787493.1| carbamoyl-phosphate synthase large chain [Tropheryma whipplei str.
           Twist]
 gi|28476373|gb|AAO44462.1| carbamoyl-phosphate synthase large chain [Tropheryma whipplei str.
           Twist]
          Length = 1103

 Score = 73.6 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 51/278 (18%), Positives = 96/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVDRS------------VGLVLAHLKPDLAFN 56
           SG      L++ G +V  +         D + S            +  +L   +PD    
Sbjct: 29  SGTQACRVLKEEGIRVILLNSNPATIMTDPEFSDATYIEPMTIEVLEAILDKERPDAVLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G    +  +Q     +LE        +     A   ++   + +V S G  V  S +
Sbjct: 89  TLGGQTALNLAMQLHNKGLLEKYGTQLIGATPEVIARGENREMFRHIVLSSGAEVATSEV 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +        P VI+P      LG  ++  +  +   + Q    +   Q+L+E+
Sbjct: 149 ITSVEGAVLFAQKNGYPLVIRPSYTMGGLGSSLVHTESELVDSVKQGIEASPNGQVLLEE 208

Query: 171 YVDG-IELTCGVMGDASL-DVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            + G  E    +M D +   V   ++   D           +S  V PA  +    Y+ +
Sbjct: 209 SIVGWKEYELELMRDVAGNTVIVCSIENIDPVGVHT----GDSVTVAPAMTLTDREYQNL 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           + +A    + IG   G     F  +P   +V  +E+N 
Sbjct: 265 RNIAIAIIRMIGINTGGCNIQFAVNPTDGRVVVIEVNP 302



 Score = 50.9 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 33/221 (14%), Positives = 77/221 (34%), Gaps = 14/221 (6%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYVIKPL 133
            IP   +   +  L+ ++     ++ S  +P      V+       + + +  P +++P 
Sbjct: 663 GIPILGTSPESIDLAENRDLFSNLLRSLNLPTYEHRTVSNKDEAIIAANKMGFPVLLRPS 722

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTC-GVMGDASLDVTE 191
                 G+ VI   Q++        + +    LLI++++ D IE+    +     L +  
Sbjct: 723 FVLGGRGMKVIHDSQALEDYFNTFHAVDSEHPLLIDKFLSDAIEVDVDALYDKHELFIGG 782

Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
           I     +   +    S  +S  + P  +  +I  ++        + +   G     F   
Sbjct: 783 IMEHIEEAGIH----SGDSSCTIPPVTLGKNIVNQIVSTTHAIARTLSVLGPVNIQFAI- 837

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
             S  ++ LE N +   T     P ++   G    +    +
Sbjct: 838 -ASGILYVLEANPRSSRT----LPFVSKATGIPLAKAATRI 873


>gi|326384229|ref|ZP_08205911.1| carbamoyl-phosphate synthase L chain ATP--binding protein [Gordonia
           neofelifaecis NRRL B-59395]
 gi|326197094|gb|EGD54286.1| carbamoyl-phosphate synthase L chain ATP--binding protein [Gordonia
           neofelifaecis NRRL B-59395]
          Length = 660

 Score = 73.6 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 44/219 (20%), Positives = 78/219 (35%), Gaps = 23/219 (10%)

Query: 58  LHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
           +H  +G   E+      +    + +      A      K+ +K ++   GVPV   I   
Sbjct: 72  IHPGYGFLSENAEFAQAVSDAGLTWIGPPPAAIRAMGSKVNAKALMDEAGVPVLKDI--- 128

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQLLIEQ 170
               +S      P +IK   GG   G+ +++    +   +  +            +  E 
Sbjct: 129 --DPESVTADELPLLIKASAGGGGRGMRIVRDLAELSDAVAAARREAESAFGDPTVFCEP 186

Query: 171 YVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL----DIYK 225
           YV+ G  +   VM D   +V  +   +        K          PA +      D+ +
Sbjct: 187 YVERGHHIEVQVMADDHGEVWAVGERECSIQRRHQK-----VVEEAPAPLVERVGGDMRE 241

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +   A  A ++IG RG    +FL D  + K F+LE N 
Sbjct: 242 RLFAAARKAVESIGYRGAGTVEFLADE-NGKFFFLETNT 279


>gi|288930717|ref|YP_003434777.1| acetyl-CoA carboxylase, biotin carboxylase [Ferroglobus placidus
           DSM 10642]
 gi|288892965|gb|ADC64502.1| acetyl-CoA carboxylase, biotin carboxylase [Ferroglobus placidus
           DSM 10642]
          Length = 514

 Score = 73.6 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 34/219 (15%), Positives = 77/219 (35%), Gaps = 18/219 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+       E   I +             K+ +++++   GVPV P    
Sbjct: 77  AIHPGYGFLAENAEFARRCEEEGIVFIGPPADVIEAMGSKVNARKLMREAGVPVIPGSDE 136

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS----SSWNHGDQL 166
           I       +    +  P  +K   GG  +GI +   ++ +     +S      +     +
Sbjct: 137 IESAEEAKEFAEKVGYPVAVKASGGGGGIGISIAHNEEELVKAFERSKKLGEKYFKDPTV 196

Query: 167 LIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
            +E+Y+     +   ++ D S  V  +   +        K                ++ +
Sbjct: 197 YVEKYLPKPRHIEFQILADDS-KVIHLGERECSIQRRHQK----LIEEAPSPIFDEEMRE 251

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +  ++A    + IG R     +FL+     ++++LE+N 
Sbjct: 252 KFGKIAVKGAKHIGYRNAGTMEFLY--QDGEIYFLEMNT 288


>gi|325266787|ref|ZP_08133459.1| phosphoribosylaminoimidazole carboxylase ATPase subunit PurK
           [Kingella denitrificans ATCC 33394]
 gi|324981719|gb|EGC17359.1| phosphoribosylaminoimidazole carboxylase ATPase subunit PurK
           [Kingella denitrificans ATCC 33394]
          Length = 380

 Score = 73.2 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 42/260 (16%), Positives = 93/260 (35%), Gaps = 31/260 (11%)

Query: 25  ALEDAGFKVSQIDVDRSVGLVLAH-----LKPD--LAFNVLHG-----NFGEDGLVQAIL 72
           A +  G++V+ +D D +               D  +A   L          E+   Q++ 
Sbjct: 25  AAKTMGYRVTVLDPDPNAPAARFADCHLCAPFDDAVALKTLAQCAAVTTEFENVHAQSMR 84

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR-FTMDSQHLISPPYVIK 131
           +L +           A++ +++  K  +   G+P  P   V R   +D       P ++K
Sbjct: 85  DLAQHTRVSPSGDCVAIAQNRIAEKAWIRKAGLPTAPYQTVERIGDIDEGTAQYLPGILK 144

Query: 132 PLKGG-SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190
               G    G I ++    +     Q    + G   ++E+ VD           A + V 
Sbjct: 145 TATLGYDGKGQIRVRTVAEVQAAFEQ----HGGVACVLEKMVDLR---------AEISVI 191

Query: 191 EIAVPKSDFYSYELKYSSLN----STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRS 246
              +      +Y+   +  +    S   +PA++P  + ++ +++A     A+   G+   
Sbjct: 192 VCRLDSRHTATYDPAENRHDNGILSYSTVPARLPETVQRQARQMAVRLADALDYVGVLAV 251

Query: 247 DFLFDPLSRKVFWLEINVQP 266
           +      ++ +   EI  +P
Sbjct: 252 EMFVVGDAQDLVVNEIAPRP 271


>gi|325287318|ref|YP_004263108.1| Pyruvate carboxylase [Cellulophaga lytica DSM 7489]
 gi|324322772|gb|ADY30237.1| Pyruvate carboxylase [Cellulophaga lytica DSM 7489]
          Length = 492

 Score = 73.2 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 39/219 (17%), Positives = 78/219 (35%), Gaps = 17/219 (7%)

Query: 58  LHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
           +H  +G   E+      +    I +      A  +  +K+ +K+ V    +P+ P I   
Sbjct: 77  IHPGYGFLSENAEFAKKVTNAGITFIGPKPHAIEVMGNKLAAKEAVKDYNIPMVPGIEEA 136

Query: 115 RFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSWNHGDQL 166
              +D        I  P +IK   GG   G+ V++  + +       + ++ S      +
Sbjct: 137 ITDVDLATKIAKEIGFPILIKAAAGGGGKGMRVVENIEELADQMKRAISEAESAFGDGSV 196

Query: 167 LIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
            IE+YV     +   V+ D   +V  +   +        K             +   I +
Sbjct: 197 FIEKYVASPRHIEIQVLADNHGNVVHLFERECSIQRRHQK----VVEEAPSVVLTPAIRE 252

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +   A    +A    G+   +FL D   +  ++LE+N 
Sbjct: 253 AMGDAAIKVAKACDYVGVGTVEFLLDA-DKNFYFLEMNT 290


>gi|302335568|ref|YP_003800775.1| carbamoyl-phosphate synthase large subunit [Olsenella uli DSM 7084]
 gi|301319408|gb|ADK67895.1| carbamoyl-phosphate synthase large subunit [Olsenella uli DSM 7084]
          Length = 1074

 Score = 73.2 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 48/278 (17%), Positives = 95/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL  AG  V  +         D D             +V  V+   +PD    
Sbjct: 29  SGTQACRALRAAGLSVVLVNSNPATIMTDPDTADRTYVEPITLDAVRRVIERERPDALLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  V      +L+   I      + +     D+      ++  G+ V  +  
Sbjct: 89  NMGGQTALNCAVALGEAGVLDEFGIEVIGCDLDSIRRGEDRELFAAAMADLGLEVARAGS 148

Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +      +    +  P VI+P       G  + +    +   + Q  + +   ++L+E+
Sbjct: 149 AHSMQDARRIVSEVGFPVVIRPSFTLGGAGGGIARDQGELERIVSQGLALSPEHEVLVEE 208

Query: 171 YVDG-IELTCGVMGDASL-DVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            ++G  E+   VM D +   +   ++   D           +S  V PA+ +     + +
Sbjct: 209 SIEGWKEIEMEVMRDVAGNGIVVCSIENLDPMGVHT----GDSITVAPAQTLTDAELQRL 264

Query: 228 QRLAFLAHQAIG-CRGISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  DP   +V  +E+N 
Sbjct: 265 RDYSLAILERIGVATGGSNVQFAVDPKDGRVIVVEMNP 302



 Score = 55.9 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 33/196 (16%), Positives = 68/196 (34%), Gaps = 8/196 (4%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           LE   +P   +   A  L+ D+ R   ++    +   PS +    +   +    I  P V
Sbjct: 652 LEAAGVPIMGTSPDAIDLAEDRDRFAALLDRLRISYPPSSVARTQQEAAEVARRIGYPLV 711

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           I+P       G+ ++  D+ +   +  ++       + ++ ++ D IEL    + D    
Sbjct: 712 IRPSYVLGGRGMGIVYGDEDLAAYMASATHVTPERPVYLDAFLEDAIELDVDALADGREC 771

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                +   +       +S  ++    P  +   I   V+        A G  G     F
Sbjct: 772 YVGSVLEHIEECGI---HSGDSACCWPPFSLSDAIVGRVRDTTRRLALACGIHGPLNVQF 828

Query: 249 LFDPLSRKVFWLEINV 264
                  +VF +E+N 
Sbjct: 829 AIR--DEQVFVIELNP 842


>gi|116071816|ref|ZP_01469084.1| 5'-phosphoribosylglycinamide transformylase [Synechococcus sp.
           BL107]
 gi|116065439|gb|EAU71197.1| 5'-phosphoribosylglycinamide transformylase [Synechococcus sp.
           BL107]
          Length = 398

 Score = 73.2 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 37/245 (15%), Positives = 93/245 (37%), Gaps = 26/245 (10%)

Query: 32  KVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSM 91
           +V  +    S+  V+   +PD+    +     E     A LE   I        A+A +M
Sbjct: 56  EVFPMTDATSLKEVVQRHRPDVVIPEIEALAVE---ALAELEQDGITVI-PTARATAFTM 111

Query: 92  DKMRSKQVVSS-CGVPVCPSILVNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVIKKDQ 148
           ++ + + + +   G+        +           +  P V+KP+   S  G  V++  +
Sbjct: 112 NRDQIRDLAAGELGLRTARFAYASNAEELKKVAAPLGWPVVVKPVMSSSGKGQSVVQTPE 171

Query: 149 SIPLD--LLQSSSWNHGDQLLIEQYVDGIELTCGVM-----GDASLDVTEIAVPKSDFYS 201
            +        +++    +Q+++E++++  +L   ++        +L    I   + +   
Sbjct: 172 QLDQAWNAAMANARGTSNQVIVEEFLE-FDLEITLLTIRQRNGETLFCPPIG-HEQERGD 229

Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
           Y+  +         PA++     ++ Q +A      +G  G+   +F       +V + E
Sbjct: 230 YQCSW--------QPAQMTDAQLQQAQTMARTVTDNLGGAGLFGVEFFL--CGNEVIFSE 279

Query: 262 INVQP 266
           ++ +P
Sbjct: 280 LSPRP 284


>gi|149050263|gb|EDM02587.1| rCG36968, isoform CRA_b [Rattus norvegicus]
          Length = 723

 Score = 73.2 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 74/221 (33%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      L   ++ +      A     DK+ SK +     V   P    
Sbjct: 133 AVHPGYGFLSENKEFAKCLAAEDVTFIGPDTHAIQAMGDKIESKLLAKRAKVNTIPGFDG 192

Query: 112 LVNRFTMDS--QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGD 164
           +V            I  P +IK   GG   G+ +   D+             +SS+   D
Sbjct: 193 VVKDADEAVRIAREIGYPVMIKASAGGGGKGMRIAWDDEETRDGFRFSSQEAASSFG-DD 251

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           +LLIE+++D    +   V+GD   +   +   +        K             +  + 
Sbjct: 252 RLLIEKFIDNPRHIEIQVLGDKHGNALWLNERECSIQRRNQK----VVEEAPSIFLDPET 307

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +   A    +A+        +FL D      ++LE+N 
Sbjct: 308 RRAMGEQAVALAKAVKYSSAGTVEFLVDSQKN-FYFLEMNT 347


>gi|226949085|ref|YP_002804176.1| carbamoyl-phosphate synthase, large subunit [Clostridium botulinum
           A2 str. Kyoto]
 gi|254813561|sp|C1FNY3|CARB_CLOBJ RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|226840847|gb|ACO83513.1| carbamoyl-phosphate synthase, large subunit [Clostridium botulinum
           A2 str. Kyoto]
          Length = 1068

 Score = 73.2 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 41/281 (14%), Positives = 97/281 (34%), Gaps = 33/281 (11%)

Query: 22  CASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLV---- 68
           C  AL+  G +   +         D D S  L    L  +   N++      DG++    
Sbjct: 580 CVKALKKLGIETIIVNNNPETVSTDFDVSDKLYFEPLTEEDVLNIVE-KEKPDGVILQFG 638

Query: 69  -------QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV--PVCPSILVNRFTMD 119
                     L+   I    +      ++ D+ +  +++    +  P    I      ++
Sbjct: 639 GQTAIKLANFLKEKNISTLGTTADQIDMAEDREKFDELLEKLKIARPKGKGIWSVEDGLE 698

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
               +  P +++P       G+ +   ++ +   L  +   +  + +LI++Y+ G E+  
Sbjct: 699 EAKKLGFPVLVRPSYVLGGQGMEITHDEKELVYYLSNAFQKDKKNPILIDKYLMGREIEV 758

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
             + D    +    +   +       +S  + T      +  DI +++          IG
Sbjct: 759 DAISDGEDVLIPGIMEHLERAGV---HSGDSITMYPTQNVSKDIKEKILEYTKKLALGIG 815

Query: 240 CRGISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFP 275
            +G+    F+       ++ +E+N       P ++ VS  P
Sbjct: 816 IKGMINIQFI--EFQGNLYVIEVNPRASRTVPYISKVSKVP 854



 Score = 59.4 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 58/290 (20%), Positives = 112/290 (38%), Gaps = 41/290 (14%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQID-------VDRSVGL--------------V 45
           G ++E + S   G      L++ G +V  I+        D+ V                V
Sbjct: 21  GQAAEFDYS---GTQACEGLKEEGVEVVLINSNPATIMTDKKVADKVYLEPLTVEFVEKV 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLV-------QAILELLEIPYTHSGILASALSMDKMRSKQ 98
           +A  +PD   ++L G  G+ GL        + IL+   +    + I +     D+   + 
Sbjct: 78  IAKERPD---SLLAGMGGQTGLNLAVELYDKGILKKYGVNVIGTSIESIKEGEDRELFRN 134

Query: 99  VVSSCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
           V+S    PV  S +V          + I  P +++P       G  + + ++ +   L  
Sbjct: 135 VMSRINGPVIQSEIVTDMENGKAFANKIGYPIIVRPAYTLGGTGGGIAESEEELDEILAL 194

Query: 157 SSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215
               +   Q+L+E+ V G  E+   VM D+  +   I V   +     +   + +S  V 
Sbjct: 195 GLQLSSIGQVLLEKSVKGWKEIEYEVMRDSRGN--CITVCNMENID-PVGIHTGDSIVVA 251

Query: 216 PAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           P++ +    Y+ ++  +     +IG +G     F  +P S +   +EIN 
Sbjct: 252 PSQTLSDKEYQMLRSASINILNSIGIKGGCNVQFALNPNSFEYAVIEINP 301


>gi|224026216|ref|ZP_03644582.1| hypothetical protein BACCOPRO_02972 [Bacteroides coprophilus DSM
           18228]
 gi|224019452|gb|EEF77450.1| hypothetical protein BACCOPRO_02972 [Bacteroides coprophilus DSM
           18228]
          Length = 503

 Score = 73.2 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 80/220 (36%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       +   I +            DK+ +++ + + GVPV P    
Sbjct: 77  AIHPGYGFLSENSEFARRCKQEGIIFIGPDPETMDAMGDKISARKHMIAAGVPVVPGTEQ 136

Query: 114 N----RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
                    +  + I  P ++K   GG   G+ +I     +      + S +      D 
Sbjct: 137 PLQSVEEAKEICNRIGYPVMLKASMGGGGKGMRLIHNVDEVEEAYNTARSESMSSFGDDT 196

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E++V+    +   ++GD   +   +   +        K             +  ++ 
Sbjct: 197 VYLEKFVEEPHHIEFQILGDNYGNAVHLFERECSIQRRNQKI----VEETPSPFVTPELR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +++   A  A +A+  +G    +FL D   R  ++LE+N 
Sbjct: 253 QKMGEAAVAAAKAVNYKGAGTIEFLVDKH-RNFYFLEMNT 291


>gi|168180417|ref|ZP_02615081.1| carbamoyl-phosphate synthase, large subunit [Clostridium botulinum
           NCTC 2916]
 gi|182668854|gb|EDT80832.1| carbamoyl-phosphate synthase, large subunit [Clostridium botulinum
           NCTC 2916]
          Length = 1068

 Score = 73.2 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 41/281 (14%), Positives = 97/281 (34%), Gaps = 33/281 (11%)

Query: 22  CASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLV---- 68
           C  AL+  G +   +         D D S  L    L  +   N++      DG++    
Sbjct: 580 CVKALKKLGIETIIVNNNPETVSTDFDVSDKLYFEPLTEEDVLNIVE-KEKPDGVILQFG 638

Query: 69  -------QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV--PVCPSILVNRFTMD 119
                     L+   I    +      ++ D+ +  +++    +  P    I      ++
Sbjct: 639 GQTAIKLANFLKEKNISTLGTTADQIDMAEDREKFDELLEKLKIARPKGKGIWSVEDGLE 698

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
               +  P +++P       G+ +   ++ +   L  +   +  + +LI++Y+ G E+  
Sbjct: 699 EAKKLGFPVLVRPSYVLGGQGMEITHDEKELVYYLSNAFQKDKKNPILIDKYLMGREIEV 758

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
             + D    +    +   +       +S  + T      +  DI +++          IG
Sbjct: 759 DAISDGEDVLIPGIMEHLERAGV---HSGDSITMYPTQNVSKDIKEKILEYTKKLALGIG 815

Query: 240 CRGISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFP 275
            +G+    F+       ++ +E+N       P ++ VS  P
Sbjct: 816 IKGMINIQFI--EFQGNLYVIEVNPRASRTVPYISKVSKVP 854



 Score = 59.0 bits (142), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 58/290 (20%), Positives = 112/290 (38%), Gaps = 41/290 (14%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQID-------VDRSVGL--------------V 45
           G ++E + S   G      L++ G +V  I+        D+ V                V
Sbjct: 21  GQAAEFDYS---GTQACEGLKEEGVEVVLINSNPATIMTDKKVADKVYLEPLTVEFVEKV 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLV-------QAILELLEIPYTHSGILASALSMDKMRSKQ 98
           +A  +PD   ++L G  G+ GL        + IL+   +    + I +     D+   + 
Sbjct: 78  IAKERPD---SLLAGMGGQTGLNLAVELYDKGILKKYGVNVIGTSIESIKEGEDRELFRN 134

Query: 99  VVSSCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
           V+S    PV  S +V          + I  P +++P       G  + + ++ +   L  
Sbjct: 135 VMSRINEPVIQSEIVTDMENGKAFANKIGYPIIVRPAYTLGGTGGGIAESEEELDEILAL 194

Query: 157 SSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215
               +   Q+L+E+ V G  E+   VM D+  +   I V   +     +   + +S  V 
Sbjct: 195 GLQLSSIGQVLLEKSVKGWKEIEYEVMRDSRGN--CITVCNMENID-PVGIHTGDSIVVA 251

Query: 216 PAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           P++ +    Y+ ++  +     +IG +G     F  +P S +   +EIN 
Sbjct: 252 PSQTLSDKEYQMLRSASINILNSIGIKGGCNVQFALNPNSFEYAVIEINP 301


>gi|33151818|ref|NP_873171.1| acetyl-CoA carboxylase biotin carboxylase subunit [Haemophilus
           ducreyi 35000HP]
 gi|33148039|gb|AAP95560.1| biotin carboxylase [Haemophilus ducreyi 35000HP]
          Length = 447

 Score = 73.2 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 82/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         L  DK+ + + +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAEQVEKSGFTFIGPTADVIRLMGDKVSAIEAMKKAGVPCVPGSDG 136

Query: 112 ---LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
                     +  + I  P +IK   GG   G+ V+ + + +   +     ++ +  + D
Sbjct: 137 PIGNDPVKNKEIANRIGYPVIIKASGGGGGRGMRVVYQAKDLEASIAMTKAEAKAAFNND 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+Y++    +   V+ D   +   +A           K          PA  I  +
Sbjct: 197 MVYMEKYLENPRHIEIQVLADTHGNAVYLAERDCSMQRRHQK-----VVEEAPAPGITPE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + K +      A + IG RG    +FLF   + + +++E+N 
Sbjct: 252 LRKFIGERCAKACREIGYRGAGTFEFLF--ENGEFYFIEMNT 291


>gi|13905236|gb|AAH06915.1| Propionyl-Coenzyme A carboxylase, alpha polypeptide [Mus musculus]
          Length = 724

 Score = 73.2 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 74/221 (33%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      L   ++ +      A     DK+ SK +     V   P    
Sbjct: 134 AVHPGYGFLSENKEFAKRLAAEDVTFIGPDTHAIQAMGDKIESKLLAKRAKVNTIPGFDG 193

Query: 112 LVNRFTMDS--QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGD 164
           +V            I  P +IK   GG   G+ +   D+             +SS+   D
Sbjct: 194 VVKDADEAVRIAREIGYPVMIKASAGGGGKGMRIAWDDEETRDGFRFSSQEAASSFG-DD 252

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           +LLIE+++D    +   V+GD   +   +   +        K             +  + 
Sbjct: 253 RLLIEKFIDNPRHIEIQVLGDKHGNALWLNERECSIQRRNQK----VVEEAPSIFLDPET 308

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +   A    +A+        +FL D      ++LE+N 
Sbjct: 309 RQAMGEQAVALAKAVKYSSAGTVEFLVDSQKN-FYFLEMNT 348


>gi|254540162|ref|NP_659093.2| propionyl-CoA carboxylase alpha chain, mitochondrial precursor [Mus
           musculus]
 gi|66773933|sp|Q91ZA3|PCCA_MOUSE RecName: Full=Propionyl-CoA carboxylase alpha chain, mitochondrial;
           Short=PCCase subunit alpha; AltName:
           Full=Propanoyl-CoA:carbon dioxide ligase subunit alpha;
           Flags: Precursor
 gi|29612536|gb|AAH49802.1| Propionyl-Coenzyme A carboxylase, alpha polypeptide [Mus musculus]
 gi|74195066|dbj|BAE28281.1| unnamed protein product [Mus musculus]
 gi|148668301|gb|EDL00631.1| propionyl-Coenzyme A carboxylase, alpha polypeptide, isoform CRA_b
           [Mus musculus]
          Length = 724

 Score = 73.2 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 74/221 (33%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      L   ++ +      A     DK+ SK +     V   P    
Sbjct: 134 AVHPGYGFLSENKEFAKRLAAEDVTFIGPDTHAIQAMGDKIESKLLAKRAKVNTIPGFDG 193

Query: 112 LVNRFTMDS--QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGD 164
           +V            I  P +IK   GG   G+ +   D+             +SS+   D
Sbjct: 194 VVKDADEAVRIAREIGYPVMIKASAGGGGKGMRIAWDDEETRDGFRFSSQEAASSFG-DD 252

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           +LLIE+++D    +   V+GD   +   +   +        K             +  + 
Sbjct: 253 RLLIEKFIDNPRHIEIQVLGDKHGNALWLNERECSIQRRNQK----VVEEAPSIFLDPET 308

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +   A    +A+        +FL D      ++LE+N 
Sbjct: 309 RQAMGEQAVALAKAVKYSSAGTVEFLVDSQKN-FYFLEMNT 348


>gi|53716029|ref|YP_106423.1| acetyl-CoA carboxylase biotin carboxylase subunit [Burkholderia
           mallei ATCC 23344]
 gi|124382540|ref|YP_001024984.1| acetyl-CoA carboxylase biotin carboxylase subunit [Burkholderia
           mallei NCTC 10229]
 gi|126447049|ref|YP_001079330.1| acetyl-CoA carboxylase biotin carboxylase subunit [Burkholderia
           mallei NCTC 10247]
 gi|254176253|ref|ZP_04882911.1| putative acetyl-CoA carboxylase, biotin carboxylase [Burkholderia
           mallei ATCC 10399]
 gi|254356106|ref|ZP_04972383.1| acetyl-CoA carboxylase, biotin carboxylase [Burkholderia mallei
           2002721280]
 gi|52421999|gb|AAU45569.1| putative acetyl-CoA carboxylase, biotin carboxylase [Burkholderia
           mallei ATCC 23344]
 gi|126239903|gb|ABO03015.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Burkholderia
           mallei NCTC 10247]
 gi|148025089|gb|EDK83258.1| acetyl-CoA carboxylase, biotin carboxylase [Burkholderia mallei
           2002721280]
 gi|160697295|gb|EDP87265.1| putative acetyl-CoA carboxylase, biotin carboxylase [Burkholderia
           mallei ATCC 10399]
 gi|261826854|gb|ABM99628.2| acetyl-CoA carboxylase, biotin carboxylase subunit [Burkholderia
           mallei NCTC 10229]
          Length = 481

 Score = 73.2 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 77/220 (35%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+    A +E   + +        A   DK R+++     GVP  P    
Sbjct: 92  AIHPGYGFLSENADFAAQVEAAGLIFVGPPARVIATMGDKARARETARRAGVPTVPGSEG 151

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK----DQSIPLDLLQSSSWNHGDQ 165
            +       +    I  P +IK   GG   GI V          +PL   ++ +      
Sbjct: 152 VVASLDGAHEVAARIGYPVMIKAAAGGGGRGIRVAHDAAQLAAQLPLAQREAQAAFGDGG 211

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+++     +   ++GD   +V  +   +        K             +   + 
Sbjct: 212 VYLERFIARARHIEVQILGDGE-NVIHLFERECSLQRRRQKIL----EEAPSPSLTPALR 266

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +   A    + +G RG    ++LFD    + +++E+N 
Sbjct: 267 DALCASATRLARQVGYRGAGTLEYLFDDARGEFYFIEMNT 306


>gi|269925439|ref|YP_003322062.1| lysine biosynthesis enzyme LysX [Thermobaculum terrenum ATCC
           BAA-798]
 gi|269789099|gb|ACZ41240.1| lysine biosynthesis enzyme LysX [Thermobaculum terrenum ATCC
           BAA-798]
          Length = 288

 Score = 73.2 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 56/255 (21%), Positives = 94/255 (36%), Gaps = 30/255 (11%)

Query: 20  KACASALEDAGFKVSQIDVDRSVGLVLAHLKP---DLAFN--VLHGNFGEDGLVQAILEL 74
           K    A E  G  + +ID DR +   L        D+  +  ++H        +   LE 
Sbjct: 15  KLIFKAAERLGVDIVRID-DRDLIFDLGKKDFPEVDIVLDRGLVHSRAEYTLRI---LES 70

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTMDSQHLISPPYVIKP 132
             IP  +S   A+    +K  +   +   GVP   ++L       +++   +  P V+KP
Sbjct: 71  WGIPTVNS-YKATITCDNKFLTNMALIEHGVPTLRTMLAYTPESAIEAIERLGYPVVLKP 129

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWN--HGDQLLIEQYV--DGIELTCGVMGDASLD 188
             G     +  I    +    L         H     I++YV   G ++   V+GD    
Sbjct: 130 NTGSWGRLLAKINDRDAAEAVLEHKEILGSYHHSIFYIQEYVQKPGRDIRAFVIGD---S 186

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           V   +  +SD +        +++    P  I  +I      LA  A  A+G   I+  D 
Sbjct: 187 VIAASYRQSDHWITNTARGGISA----PCPITPEIED----LALRAANAVGAE-IAGVDI 237

Query: 249 LFDPLSRKVFWLEIN 263
           +  P   KV  +EIN
Sbjct: 238 IETPEGYKV--IEIN 250


>gi|85858069|ref|YP_460271.1| carbamoyl phosphate synthase large subunit [Syntrophus
           aciditrophicus SB]
 gi|85721160|gb|ABC76103.1| carbamoyl-phosphate synthase large chain [Syntrophus aciditrophicus
           SB]
          Length = 1066

 Score = 73.2 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 47/277 (16%), Positives = 100/277 (36%), Gaps = 34/277 (12%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL   G+++  +              DV        +S+  ++ + KPD    
Sbjct: 29  SGTQACKALRKLGYEIILVNSNPATIMTDPGTADVTYIEPLNVQSMIEIIENEKPDAILP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G  G +   +     ILE   +      + A     D++  K+ ++  G+ +  S  
Sbjct: 89  NLGGQTGLNLTAELAKLGILEKYGVKVIGVQVDAIERGEDRIAFKETMTRLGIDMPKSEP 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                        +  P V++P       G  ++   + +     +  S +   Q+LIE+
Sbjct: 149 AYTVEEAEKIASKLGYPVVVRPAYTMGGTGGGLVYNLEELRAVASRGISASRVGQILIEE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI--PLDIYKEV 227
            V G  EL   V+ D    +  +   ++     +        ++     +    ++ + +
Sbjct: 209 SVLGWEELELEVVRDEKNQMITVCFIENV----DAMGVHTGDSYCTAPMLTISPELQERL 264

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           Q+ ++   +AI   G +   F  +P + +V  +EIN 
Sbjct: 265 QKYSYAIVEAIQVIGGTNIQFAHNPETGRVVIIEINP 301



 Score = 62.8 bits (152), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 29/200 (14%), Positives = 74/200 (37%), Gaps = 8/200 (4%)

Query: 68  VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-ILVN-RFTMDSQHLIS 125
           +   LE   +    +      L+ D+ R ++++   G+P+  S + +N +  +D    I 
Sbjct: 642 IAGELEKAGVRIIGTSPETIDLAEDRDRFRKMMRKLGIPMPESGMAINLQEALDVAKRIG 701

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGD 184
            P +++P       G+ V+  ++ +   +  +        +LI+++++  IE     + D
Sbjct: 702 YPLMVRPSYVLGGRGMEVVHDEEMLKRYVAAAVGVTPERPILIDKFLENAIEAEADAISD 761

Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244
            +       +   +       +S  ++  + P  I     + +           G  G+ 
Sbjct: 762 GTDAFVPAVMEHIELAGI---HSGDSACVIPPISIAPRHLETINEYTRTIAIEFGVVGL- 817

Query: 245 RSDFLFDPLSRKVFWLEINV 264
             +  +      V+ LE N 
Sbjct: 818 -MNIQYAIADDVVYILEANP 836


>gi|307292842|ref|ZP_07572688.1| Carbamoyl-phosphate synthase L chain ATP-binding [Sphingobium
           chlorophenolicum L-1]
 gi|306880908|gb|EFN12124.1| Carbamoyl-phosphate synthase L chain ATP-binding [Sphingobium
           chlorophenolicum L-1]
          Length = 661

 Score = 73.2 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 39/253 (15%), Positives = 86/253 (33%), Gaps = 24/253 (9%)

Query: 32  KVSQIDVDRSVGLVLAHLKP-----DLAFNVLHGNFG---EDGLVQAILELLEIPYTHSG 83
           +   I    +    L   K      D   + +H  +G   E    +  L+   I +    
Sbjct: 48  EAVHIGPSPAAQSYLIAEKIIQACKDTGADAVHPGYGFLSERESFRKALDAEGIIFVGPP 107

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSIL----VNRFTMDSQHLISPPYVIKPLKGGSSL 139
             A A   DK+ SK++  + GV V P  +         +   + I  P ++K   GG   
Sbjct: 108 ANAIAAMGDKIESKKLAKAAGVNVVPGFVGVIEDTEHAVRISNEIGYPVMMKASAGGGGK 167

Query: 140 GIIVIKKDQSIPLDLLQSSSWNH----GDQLLIEQYVD-GIELTCGVMGDASLDVTEIAV 194
           G+ +   +Q +      +          D++ IE++++    +   ++GD   ++  +  
Sbjct: 168 GMRLAYSEQDVREGFEATKREGLNSFGDDRVFIEKFIESPRHIEIQILGDQHGNILYLNE 227

Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF---D 251
            +        K             +  ++ K++        +A+G       + +    D
Sbjct: 228 RECSIQRRHQK----VVEEAPSPFVSPEMRKKMGEQCVALARAVGYFSAGTVELIVSGAD 283

Query: 252 PLSRKVFWLEINV 264
                 ++LE+N 
Sbjct: 284 KTGDGFYFLEMNT 296


>gi|326204298|ref|ZP_08194157.1| carbamoyl-phosphate synthase, large subunit [Clostridium
           papyrosolvens DSM 2782]
 gi|325985573|gb|EGD46410.1| carbamoyl-phosphate synthase, large subunit [Clostridium
           papyrosolvens DSM 2782]
          Length = 1070

 Score = 73.2 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 34/221 (15%), Positives = 90/221 (40%), Gaps = 12/221 (5%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPL 133
            +    + + +  ++ D+ +  +++ S  +P+         + + +  + I  P +++P 
Sbjct: 654 GVNILGTSVHSIDVAEDRDKFLKLLESLDIPIPEGNTAFSFQHSKEIANKIGYPVLVRPS 713

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
                  + ++  D+++   +  +S  +    +LI++YV G E+      D   D  E+ 
Sbjct: 714 YVLGGRAMEIVYNDKTLEEYITMASEISSEHPILIDKYVVGKEMEV----DGICDENEVL 769

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
           +P    +       S +S  V P + +   +   ++       +A+  +G+    F+ D 
Sbjct: 770 IPGIMEHIERAGVHSGDSIAVYPPRNLSQKVKDTIEDYTIRLAKAMKVKGLFNIQFVMD- 828

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            + KV+ +E+N +   T     P M+   G     +   ++
Sbjct: 829 SNEKVYVIEVNPRASRT----VPIMSKITGIPMVGVATKLI 865



 Score = 64.0 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 51/290 (17%), Positives = 102/290 (35%), Gaps = 41/290 (14%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI---------DVDRSVGLVLA---------- 47
           G ++E + S   G     +L + G +V  I         D   +  + +           
Sbjct: 21  GQAAEFDYS---GTQACKSLREEGIEVVLINSNPATIMTDTQSADKVYIEPITLEFVKKI 77

Query: 48  --HLKPDLAFNVLHGNFG--------EDGLVQAILELLEIPYTHSGILASALSMDKMRSK 97
               KPD     L G  G        EDG++    + L I    + + +   + D+   K
Sbjct: 78  IYKEKPDGILASLGGQTGLNMAVELAEDGII----DELNIELLGTSLSSIKKAEDRELFK 133

Query: 98  QVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
           + +      V PS +V   +  +D    I  P +I+P       G  +    +       
Sbjct: 134 ETMQEIDEKVAPSKIVTTMQDAIDFAEEIGFPIIIRPAYTLGGSGGGIANTMEEFKYICG 193

Query: 156 QSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHV 214
           +    +   Q+L+EQ V G  E+   VM D++ +   I     + +     ++  +    
Sbjct: 194 KGLKLSMISQVLLEQSVAGWKEIEYEVMRDSNDNCIIIC--NMENFDPVGVHTGDSIVVA 251

Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
               +    Y+ ++  +    +A+  +G     F  +P S +   +E+N 
Sbjct: 252 PSQTLSDVEYQMLRTASIKIIRALDIKGGCNIQFALNPDSFEYVVIEVNP 301


>gi|303278200|ref|XP_003058393.1| pyruvate carboxylase [Micromonas pusilla CCMP1545]
 gi|226459553|gb|EEH56848.1| pyruvate carboxylase [Micromonas pusilla CCMP1545]
          Length = 1254

 Score = 73.2 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 81/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       E   + +        A   DK+ +K++   C +P+ P    
Sbjct: 187 AIHPGYGFLSENADFARRCEEEGLTFIGPRSETIAQMGDKVIAKRLAKECDLPLVPGT-- 244

Query: 114 NRFTMDSQHL------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----G 163
           +  T D             P ++K   GG   G+ +++    +     ++SS        
Sbjct: 245 DEATDDFAEAEAFAETFGFPIMLKAAMGGGGRGMRIVRTMNDLKEGFTRASSEALGAFGD 304

Query: 164 DQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD 222
            ++ +E+YV+    +   ++ DA  +V  +A           K           A++  +
Sbjct: 305 GRMFLERYVEAPRHIEVQILADAHGNVVHLAERDCSVQRRHQK----VVELAPAAELSDE 360

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + K +   A    + +  R     +F+ D   R  ++LE+N 
Sbjct: 361 LRKTLHDDAVRLAKHVDYRNAGTVEFMVDKEGRH-YFLEVNP 401


>gi|225181285|ref|ZP_03734730.1| carbamoyl-phosphate synthase, large subunit [Dethiobacter
           alkaliphilus AHT 1]
 gi|225168065|gb|EEG76871.1| carbamoyl-phosphate synthase, large subunit [Dethiobacter
           alkaliphilus AHT 1]
          Length = 1084

 Score = 73.2 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 55/287 (19%), Positives = 109/287 (37%), Gaps = 35/287 (12%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI---------DVD------------RSVGLV 45
           G ++E + +   G     AL+D G +V  +         D +             ++  +
Sbjct: 21  GQAAEFDYA---GTQACRALKDEGLEVVLVNSNPATIMTDTNIADRVYIEPLQIDTLTEI 77

Query: 46  LAHLKPDLAFNVLHG----NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +A  +PD     L G    N G+D   Q ILE   +    + + A   + D+   KQ + 
Sbjct: 78  IAKERPDGLLPTLGGQVGLNAGKDLAEQGILERYGVRMLGTPLDAIIRAEDRDHFKQTME 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
               P+  S +V+     +        P V++P       G      ++ +     +   
Sbjct: 138 MLNEPIPASTIVSSIDDAVSFAAEAGYPVVVRPAYTMGGTGGGFAADEEELRSTAQRGLK 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +  +Q+L+EQ V G  E+   VM D++ +   I   ++      +   + +S  V PA+
Sbjct: 198 ASPINQILVEQSVAGWKEVEFEVMRDSNDNCITICSMEN---IDPVGVHTGDSIVVAPAQ 254

Query: 219 -IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +    ++ ++  +    +A+G  G     F  D  S     +E+N 
Sbjct: 255 TLTDKEFQMLRNASLKIIRALGIEGGCNIQFALDTDSFNYIVIEVNP 301



 Score = 72.5 bits (177), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 42/280 (15%), Positives = 97/280 (34%), Gaps = 35/280 (12%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAI---- 71
           AL+DAG++   +         D D +  L    L+P+   N+L      DG++       
Sbjct: 586 ALQDAGYETIIVNNNPETVSTDFDTADRLYFEPLQPEDVLNILD-KEQPDGVIVQFGGQT 644

Query: 72  -------LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL- 123
                  L    IP   + +     + D+ +   +++   +   P   V           
Sbjct: 645 AINLAEPLANAGIPIIGTSVENIDRAEDRDKFDLLLTELDIARPPGQTVTSAAEAVPAAQ 704

Query: 124 -ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P V++P        + ++  D  +   +  +   +    +L+++Y+ G EL    +
Sbjct: 705 AIGYPVVVRPSYVLGGRAMEIVYSDDELLEYMHNAVRVSPRHPVLVDKYLLGTELEVDAI 764

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCR 241
            D    +    +   +           +S  + PA+ I     + +        + +  +
Sbjct: 765 SDGETVLIPGIMEHIERAGVHS----GDSIAMYPAQSIADKHKELIVDYTTRLARGLKVK 820

Query: 242 GISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPE 276
           GI    ++    +  ++ +E+N       P ++ V+  P 
Sbjct: 821 GIINIQYVLFEDN--LYVIEVNPRSSRTVPFLSKVTDIPM 858


>gi|171680141|ref|XP_001905016.1| hypothetical protein [Podospora anserina S mat+]
 gi|170939697|emb|CAP64923.1| unnamed protein product [Podospora anserina S mat+]
          Length = 1169

 Score = 73.2 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 53/289 (18%), Positives = 106/289 (36%), Gaps = 37/289 (12%)

Query: 4   LMGGISSEREVSLSSGKACASALEDAGF--------------------KVSQIDVDRS-V 42
           L  G + E + S   G     AL++AG                     +V  + +    V
Sbjct: 103 LAIGQAGEFDYS---GSQALKALKEAGVSSVLMNPNIATIQTNHSLADEVYYLPITPEYV 159

Query: 43  GLVLAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQ 98
             V+   +PD  F    G    +  VQ     + E   +    + +    LS D+    +
Sbjct: 160 EYVIQKERPDGIFLSFGGQTALNLGVQMEKLGMFEKYGVRVLGTSVRTLELSEDRDLFAK 219

Query: 99  VVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
            +    +P+  SI VN     +++   I  P +++       LG      ++ +    + 
Sbjct: 220 ALEEINIPIAKSIAVNTLDDALEAARNIGYPIIVRAAYALGGLGSGFANNEEELR--NMA 277

Query: 157 SSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215
           + S     Q+L+E+ + G  E+   V+ DA+ +   I V   + +   L   + +S  V 
Sbjct: 278 ARSLTLSPQILVEKSLKGWKEVEYEVVRDANNN--CITVCNMENFD-PLGIHTGDSIVVA 334

Query: 216 PAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
           P++ +  + Y  ++  A    + +G  G     +   P       +E+N
Sbjct: 335 PSQTLSDEEYHMLRSAAIKIVRHLGVVGECNVQYALQPDGLDYRVIEVN 383



 Score = 56.7 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 31/193 (16%), Positives = 71/193 (36%), Gaps = 16/193 (8%)

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSS 138
            +       + D+ +  +++ S GV       +            +  P +++P    S 
Sbjct: 739 GTDPRDIDKAEDRQKFSEILDSIGVDQPAWKELTSVEAAEKFAQEVGYPVLVRPSYVLSG 798

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD 198
             + VI+  + +   L  +S+ +    ++I ++++G +    +  D      E+ +    
Sbjct: 799 AAMTVIRSQEDLKDKLEAASNVSPDHPVVISKFIEGAQE---IDVDGVASKGELIIHAVS 855

Query: 199 FYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRG-----ISRSDFLFDP 252
            +  +    S ++T V  PA +  D    V+ +A    +A    G     I R++   DP
Sbjct: 856 EHVEQAGVHSGDATLVLPPANLDQDTMDRVKEIAQKVAKAWNITGPFNMQIIRAE---DP 912

Query: 253 LSRKV--FWLEIN 263
                    +E N
Sbjct: 913 EGGVPALKVIECN 925


>gi|91217606|ref|ZP_01254564.1| pyruvate carboxylase [Psychroflexus torquis ATCC 700755]
 gi|91184286|gb|EAS70671.1| pyruvate carboxylase [Psychroflexus torquis ATCC 700755]
          Length = 1150

 Score = 73.2 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 35/243 (14%), Positives = 82/243 (33%), Gaps = 24/243 (9%)

Query: 35  QIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSM 91
            +D+   +  V      D     +H  +G   E+          +I +    +       
Sbjct: 62  YLDI-EEIIRVAKENGVD----AIHPGYGFLSENSKFAQACADNDIIFVGPKVDVLKSLG 116

Query: 92  DKMRSKQVVSSCGVPVCPSILVNRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKD 147
           DK+ +K+V     VPV  S   +  T++        I  P ++K   GG   G+ V++  
Sbjct: 117 DKITAKKVAIKSDVPVIESNKKDLDTLEIATEEAERIGFPLMLKAASGGGGRGMRVLRSM 176

Query: 148 QSIPLDLLQSSSWNH----GDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSY 202
             +     +S          + + +E++++    +   ++ D                  
Sbjct: 177 GELEKAYGESRREAKNAFGDETVFLEKFIENPKHIEIQIVADN-----FGNTLHLFERDC 231

Query: 203 ELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
            ++          P+  +   +  ++   A    +A+    I   +FL D     ++++E
Sbjct: 232 SVQRRYQKVIEFAPSKDLDETVKNKLYSYAIKICKAVNYNNIGTVEFLVD-DDGSIYFIE 290

Query: 262 INV 264
           +N 
Sbjct: 291 VNP 293


>gi|239981263|ref|ZP_04703787.1| hypothetical protein SalbJ_17636 [Streptomyces albus J1074]
 gi|291453120|ref|ZP_06592510.1| carboxylase [Streptomyces albus J1074]
 gi|291356069|gb|EFE82971.1| carboxylase [Streptomyces albus J1074]
          Length = 441

 Score = 73.2 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 35/193 (18%), Positives = 74/193 (38%), Gaps = 13/193 (6%)

Query: 71  ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVI 130
           + E+L +P   +G  A+ +  +K+  + ++   G     S        ++      P V+
Sbjct: 108 LCEVLGLP--GAGTWAARVCRNKVMQRVILRDHG---PVSRAFAPHERENASSEVYPCVV 162

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190
           KP     S G++ +  D  +   L    ++   + +L+E+ V G E +   +     +V 
Sbjct: 163 KPAGRMFSSGVLRVDDDAELRASLA---AYEPDETILVEELVVGPEFSVEALVHQG-EVV 218

Query: 191 EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC-RGISRSDFL 249
              V          +Y +    H  PAK+PL     +        +A+    GI+ ++F 
Sbjct: 219 WSGVTAKLTNEDSSRYFTEIG-HTSPAKLPLPHTDALVSANAAILKALRFDSGITHAEFR 277

Query: 250 FDPLSRKVFWLEI 262
                 +   +E+
Sbjct: 278 LR--DGQPVLMEV 288


>gi|330830940|ref|YP_004393892.1| biotin carboxylase / acetyl-coenzyme A carboxylase carboxyl
           transferase subunit alpha [Aeromonas veronii B565]
 gi|328806076|gb|AEB51275.1| Biotin carboxylase / acetyl-coenzyme A carboxylase carboxyl
           transferase subunit alpha [Aeromonas veronii B565]
          Length = 446

 Score = 73.2 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 39/222 (17%), Positives = 81/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+     ++E     +         L  DK+ + + +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAEVVEKSGFIFIGPRAETIRLMGDKVSAIEAMKKAGVPCVPGSDG 136

Query: 112 LVN---RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGD 164
            V+   +        I  P +IK   GG   G+ V++ +  +   +     ++  +   D
Sbjct: 137 PVDNDAKHNAAIAKRIGYPVIIKAAGGGGGRGMRVVRNEAELAGAIALTKSEAGQFFKND 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+Y++    +   V+ D   +   +            K          PA  I  +
Sbjct: 197 MVYMEKYLENPRHIEIQVLADGQGNALYLGERDCSMQRRHQK-----VVEEAPAPGITAE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + K +      A   IG RG    +FL+   + + +++E+N 
Sbjct: 252 MRKFIGERCVRACIEIGYRGAGTFEFLY--ENGEFYFIEMNT 291


>gi|254491174|ref|ZP_05104355.1| acetyl-CoA carboxylase, biotin carboxylase [Methylophaga
           thiooxidans DMS010]
 gi|224463687|gb|EEF79955.1| acetyl-CoA carboxylase, biotin carboxylase [Methylophaga
           thiooxydans DMS010]
          Length = 471

 Score = 73.2 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 73/221 (33%), Gaps = 20/221 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+     + E   I +            DK  ++  +    VP+ P    
Sbjct: 76  AIHPGYGFLSENAEFARLCEKNNITFIGPKSTVIDKMGDKTAARDSMREADVPITPGSDG 135

Query: 114 NRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGD 164
           N   +D        +  P +IK   GG   GI      + +           + ++   +
Sbjct: 136 NLADLDEALSLAEEVGYPVMIKATSGGGGRGIRRCDSAEELRQQYPRVISEATKAFGSAE 195

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDI 223
             L +  V+   +   ++ D   +V  +            K        + P  ++  + 
Sbjct: 196 VFLEKCIVNPRHIEVQILADTHGNVIHLYERDCSIQRRNQKL-----IEIAPSPQLTPEQ 250

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              V  LA  A QA+G       +FL      +V+++E+N 
Sbjct: 251 RDYVGDLAVRAAQAVGYENAGTVEFLLT--GNEVYFMEMNT 289


>gi|157363234|ref|YP_001470001.1| carbamoyl-phosphate synthase, large subunit [Thermotoga lettingae
           TMO]
 gi|167006452|sp|A8F453|CARB_THELT RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|157313838|gb|ABV32937.1| carbamoyl-phosphate synthase, large subunit [Thermotoga lettingae
           TMO]
          Length = 1105

 Score = 73.2 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 60/289 (20%), Positives = 105/289 (36%), Gaps = 38/289 (13%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI---------DVDRS------------VGLV 45
           G ++E + S   G     AL+  G++V  I         D + S            +  V
Sbjct: 21  GQAAEFDYS---GAQAIKALKSLGYRVVVINSNSATIMTDPEFSDAVYIEPLTIDFLEAV 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   +PD     L G    +  V+     +L   ++            + D+ + K  + 
Sbjct: 78  IEKERPDALLPTLGGQTALNLAVELFKKGVLCKYDVELIGVKPDTIEKAEDREQFKTAMK 137

Query: 102 SCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
           +CG+ V  S LV+  T  MD       P VI+P       G  +    Q +   +     
Sbjct: 138 NCGLEVLESRLVSSVTEAMDVVREFGYPVVIRPSFTLGGSGGGIAYNLQELKAIVENGLI 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPA 217
            +    +LIE+ V G  E    VM D   +   +   ++    ++       +S  V PA
Sbjct: 198 ESPAHTVLIEKSVIGWKEYELEVMKDHEDNFIVVCSIEN----FDPMGIHTGDSVTVAPA 253

Query: 218 K-IPLDIYKEVQRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           + +    Y+ ++  A  A  AIG   G     F  D  + K+  +E+N 
Sbjct: 254 QTLTDVEYQCMRNAARKALSAIGFDAGGCNIQFAVDTYTGKLVIIEMNP 302


>gi|332707489|ref|ZP_08427535.1| hypothetical protein LYNGBM3L_39910 [Lyngbya majuscula 3L]
 gi|332353747|gb|EGJ33241.1| hypothetical protein LYNGBM3L_39910 [Lyngbya majuscula 3L]
          Length = 135

 Score = 73.2 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 28/84 (33%), Positives = 41/84 (48%), Gaps = 6/84 (7%)

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280
             + K VQ +A   HQA+GCR  S  DF  DP   + ++LE  +    +P S+   MA  
Sbjct: 52  DPVTKPVQEVAKRCHQALGCRHYSLFDFRIDPQ-GQPWFLEAGLYCSFSPKSVIASMAKA 110

Query: 281 AGYSFRELL-----LWMVEDASCL 299
           +G S  ELL       ++  A+C 
Sbjct: 111 SGISVNELLMIAIDETLINKAACR 134


>gi|289548562|ref|YP_003473550.1| acetyl-CoA carboxylase, biotin carboxylase [Thermocrinis albus DSM
           14484]
 gi|289182179|gb|ADC89423.1| acetyl-CoA carboxylase, biotin carboxylase [Thermocrinis albus DSM
           14484]
          Length = 445

 Score = 73.2 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 40/218 (18%), Positives = 89/218 (40%), Gaps = 16/218 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+     ++   +  +         L  DK++++++    G+P+ P    
Sbjct: 78  AVHPGYGFLSENPKFAEVVNASKRVFIGPPPHVLELIGDKVKARELAKKVGLPLLPGSDG 137

Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD----QSIPLDLLQSSSWNHGDQL 166
            +  +  ++  + I  P VIK   GG   GI V+  +    + +PL + ++      +++
Sbjct: 138 PVDFKKAVEIANSIGYPVVIKAAGGGGGRGIRVVHNERELREKLPLAMQEAQVAFGDNRV 197

Query: 167 LIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
            IE+Y ++   +   V+ D   +V  +   +    S + +Y  L         I     K
Sbjct: 198 YIEKYLINPKHIEVQVLADRYGNVVCLGERE---CSIQRRYQKL-VEEAPSVSITDQQRK 253

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            ++       +A+G  G    +FL D      +++E+N
Sbjct: 254 ILEEGVTEFCKALGYVGAGTVEFLMD-QDGNFYFMEMN 290


>gi|237745680|ref|ZP_04576160.1| carbamoyl-phosphate synthase subunit large [Oxalobacter formigenes
           HOxBLS]
 gi|229377031|gb|EEO27122.1| carbamoyl-phosphate synthase subunit large [Oxalobacter formigenes
           HOxBLS]
          Length = 1076

 Score = 73.2 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 48/278 (17%), Positives = 100/278 (35%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +              DV        + V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYKVILVNSNPATIMTDPNMADVTFIEPITWKVVERIIEKERPDAILP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      +LE   +    +   A   + D+ + K+ ++  G+    S +
Sbjct: 89  TMGGQTALNCALDLYRNGVLEKYHVELIGASPEAIDKAEDRSKFKEAMTRIGLSSARSGI 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +      D Q  +  P +I+P       G  +   ++       +    +   +LLIE+
Sbjct: 149 AHTLDEAWDVQKKMGFPVIIRPSFTLGGTGGGIAYNEEEFDAICRRGLEASPTSELLIEE 208

Query: 171 YVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + + +   ++   D           +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDRADNCIIVCSIENLDPMGVHT----GDSITVAPAQTLTDKEYQLM 264

Query: 228 QRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P   ++  +E+N 
Sbjct: 265 RNASIAILREIGVDTGGSNVQFAVNPKDGRMIVIEMNP 302



 Score = 61.7 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/202 (14%), Positives = 76/202 (37%), Gaps = 12/202 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           LE   +P   +       + D+ R ++++    +   P+         M+    I  P V
Sbjct: 648 LEANGVPIVGTSPDMIDAAEDRERFQKLLKELNLRQPPNRTARTEEEAMELAREIGYPIV 707

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++     +   + ++   ++   +L+++++ D IE+    + D    
Sbjct: 708 VRPSYVLGGRAMEIVHDQTGLERYMREAVKVSNDSPVLLDRFLNDAIEVDVDCISDGKRV 767

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           +    +   +       +S  ++  + P  +  +  +E++R   L  + +   G+    F
Sbjct: 768 LIGGVMEHIEQAGV---HSGDSACSLPPYSLSKETIEELKRQTTLMAKGLNVVGLMNVQF 824

Query: 249 LF--DPLSRK----VFWLEINV 264
                 +  K    VF LE+N 
Sbjct: 825 AIQHQEVDGKLQDVVFVLEVNP 846


>gi|149277329|ref|ZP_01883471.1| carbamoyl-phosphate synthase large subunit [Pedobacter sp. BAL39]
 gi|149232206|gb|EDM37583.1| carbamoyl-phosphate synthase large subunit [Pedobacter sp. BAL39]
          Length = 938

 Score = 73.2 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 55/278 (19%), Positives = 108/278 (38%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG   A +L++ G +VS I+ +                      S+  +L   K D    
Sbjct: 29  SGSQAALSLKEEGIEVSIINSNPATIMTDKVIGDHVYLWPLTVDSIEQILTERKIDAVLP 88

Query: 57  VLHG----NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    N  ++   + + E   +      + A   + ++   +Q++   GV V PS +
Sbjct: 89  TMGGQTALNLCKEAEERGVWEKHGVRVIGVDVDAIEKTENREAFRQLMIDIGVGVAPSKI 148

Query: 113 VNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            N F    ++   I  P VI+P       G   + K +     L +    +   ++L+E+
Sbjct: 149 ANSFLEGKEAAQQIGYPLVIRPSYTLGGSGGGFVHKKEDFDHALQRGLEASPTHEVLVEK 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            V G  E    ++ D++ +V  I   ++    ++       +S  V PA  +    Y+++
Sbjct: 209 AVFGWKEYELELLRDSNDNVIIICSIEN----FDPMGIHTGDSITVAPAMTLSDRCYQDM 264

Query: 228 QRLAFLAHQAIG-CRGISRSDFLFDPLSRKVFWLEINV 264
           +  A    +AIG   G     F  +P +  +  +EIN 
Sbjct: 265 RNQAIKMMRAIGNFAGGCNVQFSVNPENDDIIAIEINP 302



 Score = 60.1 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 27/214 (12%), Positives = 75/214 (35%), Gaps = 14/214 (6%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYVIKPL 133
            I    +      ++ D+ R   ++    +P     +           + +  P +++P 
Sbjct: 655 GIKIIGTSYNDMDVAEDRGRFSDLLKELEIPYPRYGVAENAEEAIVVANEVGYPVLVRPS 714

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC--GVMGDASLDVTE 191
                 G+ ++  D+ +   +++      G+++LI+ ++D  E T    +     + +  
Sbjct: 715 YVLGGQGMSIVINDEDLEKAVVKLLGDLPGNRVLIDHFLDRAEETESDSISDGEDVHIVG 774

Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
           +         +    S  +S  + P  +   +  +++  +    +A+   G+    F   
Sbjct: 775 LMEHIEPAGIH----SGDSSAVLPPFSLSEKVMNDMEVYSKKIAKALNVIGLLNIQFAV- 829

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285
               KV+ +E N +   T     P +A      +
Sbjct: 830 -KDEKVYVIEANPRASRT----VPFIAKAYDVPY 858


>gi|109121193|ref|XP_001092670.1| PREDICTED: propionyl-CoA carboxylase alpha chain, mitochondrial
           [Macaca mulatta]
          Length = 728

 Score = 73.2 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 75/220 (34%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      L   ++ +      A     DK+ SK +     V   P    
Sbjct: 138 AVHPGYGFLSENKEFARCLAAEDVIFIGPDTHAIQAMGDKIESKLLAKKAEVNTIPGFDG 197

Query: 112 LVNRFTMDS--QHLISPPYVIKPLKGGSSLGIIVIKKDQS----IPLDLLQSSSWNHGDQ 165
           +V            I  P +IK   GG   G+ +   D+       L   +++S    D+
Sbjct: 198 VVKDAEEAVRIAREIGYPVMIKASAGGGGKGMRIAWDDEETRDGFRLSSQEAASSFGDDR 257

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           LLIE+++D    +   V+GD   +   +   +        K             +  +  
Sbjct: 258 LLIEKFIDNPRHIEVQVLGDKHGNALWLNERECSIQRRNQK----VVEEAPSIFLDAETR 313

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +   A    +A+        +FL D      ++LE+N 
Sbjct: 314 RAMGEQAVALARAVKYSSAGTVEFLVDSKKN-FYFLEMNT 352


>gi|89898261|ref|YP_515371.1| acetyl-CoA carboxylase biotin carboxylase subunit [Chlamydophila
           felis Fe/C-56]
 gi|89331633|dbj|BAE81226.1| acetyl-coenzyme A carboxylase carboxyl transferase A subunit
           [Chlamydophila felis Fe/C-56]
          Length = 451

 Score = 73.2 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 83/220 (37%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---S 110
            +H  +G   E+    +I E   + +      + A   DK+ +KQ+      PV P    
Sbjct: 76  AVHPGYGFLSENANFASICESCGLTFIGPSSESIATMGDKIAAKQLAKKIKCPVIPGSEG 135

Query: 111 ILVNRFT-MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS----IPLDLLQSSSWNHGDQ 165
           ++ +    +     I  P VIK + GG   GI ++++             ++ +  +   
Sbjct: 136 VVKDETEGLKIAEKIGFPIVIKAVAGGGGRGIRIVREKDEFFRAFSAARAEAEAGFNNPD 195

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE++++    L   V+GD   +   +            K             +  ++ 
Sbjct: 196 VYIEKFIENPRHLEVQVLGDKHGNYVHLGERDCTVQRRRQK----LIEETPSPILTPELR 251

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +V ++A    ++     +   +FL D   +K +++E+N 
Sbjct: 252 AKVGKVAVDLAKSANYHSVGTVEFLLDK-DKKFYFMEMNT 290


>gi|109899235|ref|YP_662490.1| carbamoyl-phosphate synthase L chain, ATP-binding
           [Pseudoalteromonas atlantica T6c]
 gi|109701516|gb|ABG41436.1| 3-methylcrotonoyl-CoA carboxylase, alpha subunit [Pseudoalteromonas
           atlantica T6c]
          Length = 675

 Score = 73.2 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 40/224 (17%), Positives = 75/224 (33%), Gaps = 27/224 (12%)

Query: 58  LHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI--- 111
           +H  +G   E+           I +    + A      K  +K ++    VP+ P     
Sbjct: 78  IHPGYGFLSENAEFAKACADNNIIFVGPPVEAIDAMGSKSAAKHIMQQANVPLVPGYHGD 137

Query: 112 -----LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH---- 162
                L+ +   D    +  P ++K   GG   G+  +  +      L  +         
Sbjct: 138 DQSPALIKKHADD----MGYPVLLKAAAGGGGKGMRQVWSEDEFDDALAAAKREAMSSFN 193

Query: 163 GDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIP 220
            D +L+E+Y+     +   V  D   +   I           ++          PA K+P
Sbjct: 194 DDIMLVEKYLTQPRHVEVQVFCDHHGNGVHI-----FERDCSVQRRHQKVVEEAPAFKMP 248

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            ++   +   A  A QAI   G    +FL D      +++E+N 
Sbjct: 249 PELRVAMGDAALKAAQAINYVGAGTVEFLLDT-DGSFYFMEMNT 291


>gi|238497716|ref|XP_002380093.1| conserved hypothetical protein [Aspergillus flavus NRRL3357]
 gi|220693367|gb|EED49712.1| conserved hypothetical protein [Aspergillus flavus NRRL3357]
          Length = 386

 Score = 73.2 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 46/242 (19%), Positives = 84/242 (34%), Gaps = 25/242 (10%)

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCP--SILVNRFTMDS--QHLISPPYVIKPLKG 135
                       DK      + S G    P   ++ +   +D     + S P V KP++G
Sbjct: 138 VGQPPGLVENCDDKAFLNDKLRSLGGYTLPRSWLVTDSHNLDEFVGSMKSFPVVGKPVRG 197

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV---TEI 192
             S G+ +      +   +   +       +++E+Y+ G E T  VM  +       + +
Sbjct: 198 RGSHGVKLCHSPAQLKQHI--EALLGESPLIMVEEYLSGEEATITVMPPSPERPEHWSML 255

Query: 193 AVPKSDFYSYELKYS-----SLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
            V + +       Y+     + NS  V   ++    Y +V        + IG     R D
Sbjct: 256 PVTRFNHADGIAPYNGSVAVTANSRVVTNDEMKDPAYGKVMEECQGVAKLIGATAPIRID 315

Query: 248 FLFDPLSRKVFWLEINVQPGMT---------PVSIFPEMAAYAGYSFRELLLWMVEDASC 298
                   +    +IN++P MT           S+    AA  G+ +  LL  ++  AS 
Sbjct: 316 VRRFREGSEFALFDINMKPNMTGPGRPGREDQASLTAMAAAAIGWDYGTLLQKIL--ASA 373

Query: 299 LR 300
            R
Sbjct: 374 QR 375


>gi|126643024|ref|YP_001086008.1| putative geranyl-CoA carboxylase alpha subunit [Acinetobacter
           baumannii ATCC 17978]
          Length = 622

 Score = 73.2 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 34/198 (17%), Positives = 69/198 (34%), Gaps = 14/198 (7%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD----SQHLISPPYVIK 131
           +I +      A  L   K  SK  +   GVP  P    +R  ++        I  P ++K
Sbjct: 76  QITFIGPTASAIELMGSKRLSKIAMIEAGVPCVPGYEGDRQDLEYLATQAEQIGFPIMVK 135

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSS-----SWNHGDQLLIEQYVDGIELTCGVMGDAS 186
              GG   G+ ++++   +   L  +      ++  G+ +L +  +    +   V GD  
Sbjct: 136 ASAGGGGRGMRLVQQASELFEALQTARSEAENAFGSGELILEKAVIAPRHVEIQVFGDTH 195

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRS 246
            +   +            K             +  ++ +++   A  A +A    G    
Sbjct: 196 GNYVYLFERDCSIQRRHQK----VVEEAPCPVMTPELRQKMGEAAVAAAKACAYVGAGTV 251

Query: 247 DFLFDPLSRKVFWLEINV 264
           +FL D      ++LE+N 
Sbjct: 252 EFLLDAS-GAFYFLEMNT 268


>gi|116254876|ref|YP_770712.1| putative biotin carboxylase [Rhizobium leguminosarum bv. viciae
           3841]
 gi|115259524|emb|CAK10662.1| putative biotin carboxylase [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 461

 Score = 73.2 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 38/216 (17%), Positives = 77/216 (35%), Gaps = 16/216 (7%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRF 116
           +G   E+      +E   + +      + A+  DK+ +K+ + + GVP  P     +   
Sbjct: 93  YGFLSENAAFADAVEKAGLIFIGPTASSIAIMGDKISAKRAMMAAGVPCVPGPDTALPDD 152

Query: 117 TMDSQHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG----DQLLIE 169
               + +   I  P ++K   GG   G+ V+ K   +   +  +            L +E
Sbjct: 153 AATIERIALEIGYPVIVKASGGGGGRGMRVVPKADLLHEAIALTREEARKAFGSPSLYME 212

Query: 170 QYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           ++++    +   V+ D   +   +            K           A I  DI + V 
Sbjct: 213 KFLEHPRHIEIQVICDDHGNAVWLGHRDCSMQRRHQK----VVEEAPAAGIAPDIIQPVG 268

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
                A   IG RG+   +FL+       +++E+N 
Sbjct: 269 MACVQACLQIGYRGVGTFEFLY--EDGAFYFIEMNT 302


>gi|163848951|ref|YP_001636995.1| acetyl-CoA carboxylase, biotin carboxylase [Chloroflexus
           aurantiacus J-10-fl]
 gi|222526904|ref|YP_002571375.1| acetyl-CoA carboxylase, biotin carboxylase [Chloroflexus sp.
           Y-400-fl]
 gi|163670240|gb|ABY36606.1| acetyl-CoA carboxylase, biotin carboxylase [Chloroflexus
           aurantiacus J-10-fl]
 gi|222450783|gb|ACM55049.1| acetyl-CoA carboxylase, biotin carboxylase [Chloroflexus sp.
           Y-400-fl]
          Length = 455

 Score = 73.2 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 74/221 (33%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     +    ++ +         L  DK   ++ +   GVP  P    
Sbjct: 77  AIHPGYGFLSENPYFAEMCADCKLTFIGPPPEPIRLMGDKAIGRETMRKAGVPTVPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGDQ 165
            +      +D    I  P ++KP  GG   G+ V   +  +    P    ++ +      
Sbjct: 137 EVRSLEEAIDVARQIGYPVLLKPSGGGGGRGMRVAYDEADLQRAFPTARAEAEAAFGNGA 196

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           LL+E+Y+     +   V+ D                    +          P+  +  ++
Sbjct: 197 LLLEKYLTRVRHVEIQVLADQYGHAI-----HLGERDCSAQRRHQKIVEEAPSPAVTPEL 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +   A    ++IG       +FL D      +++E+N 
Sbjct: 252 RERMGADAVRGIKSIGYVNAGTLEFLLD-QDGNYYFIEMNT 291


>gi|325105839|ref|YP_004275493.1| carbamoyl-phosphate synthase, large subunit [Pedobacter saltans DSM
           12145]
 gi|324974687|gb|ADY53671.1| carbamoyl-phosphate synthase, large subunit [Pedobacter saltans DSM
           12145]
          Length = 937

 Score = 73.2 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 57/278 (20%), Positives = 107/278 (38%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG   A +L++ G +VS I+ +                      S+  +L   K D    
Sbjct: 29  SGSQAALSLKEEGIEVSIINSNPATIMTDNVIADHVYLLPLTVDSIEQILQERKIDAVLP 88

Query: 57  VLHG----NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    N  ++   + I     +      I A   + ++   +Q++   GV V PS +
Sbjct: 89  TMGGQTALNLAKEADERGIWTKYGVRIIGVDIAAIEKTENREEFRQLMVDIGVGVAPSKI 148

Query: 113 VNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            N F    ++   I  P VI+P       G   +   +     L +  + +   ++L+EQ
Sbjct: 149 ANSFLEGKEAAQEIGFPLVIRPSYTLGGSGGGFVHSKEDFDAALTRGLTASPTHEVLVEQ 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            V G  E    ++ D++ +V  I   ++    ++       +S  V PA  +    Y+E+
Sbjct: 209 AVLGWKEFELELLRDSNDNVIIICSIEN----FDPMGIHTGDSITVAPAMTLSDRTYQEM 264

Query: 228 QRLAFLAHQAIG-CRGISRSDFLFDPLSRKVFWLEINV 264
           +  A    +AIG   G     F  +P +  +  +EIN 
Sbjct: 265 RNQAIKMMRAIGNFAGGCNVQFSVNPANDDIIAIEINP 302



 Score = 69.4 bits (169), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 26/218 (11%), Positives = 76/218 (34%), Gaps = 14/218 (6%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           L    I    +      ++ D+ R   ++    +P     +       +   + +  P +
Sbjct: 650 LHERGIKIIGTSFDNMDIAEDRGRFSDLLRDLNIPYPRYGVAESAEEALKVANEVGYPVL 709

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD--GIELTCGVMGDASL 187
           ++P       G+ ++  D+ +   +++      G+++LI+ ++D      +  +     +
Sbjct: 710 VRPSYVLGGQGMSIVINDEDLEKAVVKLLGDLPGNRVLIDHFLDRAEEAESDSIFDGEDI 769

Query: 188 DVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
            +  +         +    S  +S  + P  +  ++  +++       +A+  RG+    
Sbjct: 770 HIIGLMEHIEPAGIH----SGDSSAVLPPYTLSANVISKMEEYTEKLARALDIRGLMNIQ 825

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285
           F        V+ +E N +   T     P +A      +
Sbjct: 826 FAIKNED--VYVIEANPRASRT----VPFIAKAYDVPY 857


>gi|311103845|ref|YP_003976698.1| biotin carboxylase 1 [Achromobacter xylosoxidans A8]
 gi|310758534|gb|ADP13983.1| biotin carboxylase 1 [Achromobacter xylosoxidans A8]
          Length = 448

 Score = 73.2 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 34/222 (15%), Positives = 82/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         L  DK+ +K+ +   GVPV P    
Sbjct: 77  AIHPGYGFLSENADFADRVEKSGFVFIGPRPDTIRLMGDKVSAKRAMIEAGVPVVPGSEG 136

Query: 112 LVNRFTMD---SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
            +     +       +  P +IK   GG   G+ V+  + ++   +     ++ +  +  
Sbjct: 137 ALPDDPQEIIRIAREVGYPVIIKAAGGGGGRGMRVVYTEAALLNAVTMTRSEAGAAFNNP 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
           ++ +E++++    +   V+ D   +   +            K          PA  +   
Sbjct: 197 EVYMEKFLENPRHIEIQVLADGGRNAVWLGERDCSMQRRHQK-----VIEEAPAPGVARR 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + + +      A + +G RG    +FL+   + + +++E+N 
Sbjct: 252 LIERIGDRCADACRKMGYRGAGTFEFLY--ENGEFYFIEMNT 291


>gi|311277781|ref|YP_003940012.1| acetyl-CoA carboxylase, biotin carboxylase [Enterobacter cloacae
           SCF1]
 gi|308746976|gb|ADO46728.1| acetyl-CoA carboxylase, biotin carboxylase [Enterobacter cloacae
           SCF1]
          Length = 449

 Score = 73.2 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 42/222 (18%), Positives = 80/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         L  DK+ +   +   GVP  P    
Sbjct: 77  AIHPGYGFLSENANFAEQVERSGFIFIGPKADTIRLMGDKVSAITAMKKAGVPTVPGSDG 136

Query: 112 -LVNRFTMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
            L +    +  H   I  P +IK   GG   G+ V++ D  +   +     ++ +    D
Sbjct: 137 PLTDDMDANRAHAKRIGYPVIIKASGGGGGRGMRVVRSDAELAQSISMTKAEAKAAFSND 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+Y++    +   V+ D       +A           K          PA  I  +
Sbjct: 197 MVYMEKYLENPRHIEIQVLADGQGHAIYLAERDCSMQRRHQK-----VVEEAPAPGITPE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + + +      A   IG RG    +FLF   + + +++E+N 
Sbjct: 252 LRRYIGERCSKACIDIGYRGAGTFEFLF--ENGEFYFIEMNT 291


>gi|297584562|ref|YP_003700342.1| acetyl-CoA carboxylase, biotin carboxylase [Bacillus
           selenitireducens MLS10]
 gi|297143019|gb|ADH99776.1| acetyl-CoA carboxylase, biotin carboxylase [Bacillus
           selenitireducens MLS10]
          Length = 453

 Score = 73.2 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 37/215 (17%), Positives = 79/215 (36%), Gaps = 13/215 (6%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVN 114
           +G   E+     I E   I +      A +    K  ++  +   GVPV P     +   
Sbjct: 82  YGFLAENADFAEICEACNITFIGPSAWAISQMGTKDVARTTMKQAGVPVVPGSDGIVETV 141

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGDQLLIEQ 170
              ++    I  P +IK   GG   GI V + +  +   +     ++ +    + + +E+
Sbjct: 142 DAGVEVAESIGYPVIIKATAGGGGKGIRVARNESELRKGISVTQKEAKANFGNEGVYLEK 201

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           Y++    +   VM D   +V  +            K             +   + +++ +
Sbjct: 202 YIEDFRHVEIQVMADRFGNVIHLGERDCTIQRRLQK----LVEETPSPAVSKAVREKMGQ 257

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            A  A  A+   G    +F+FD  + + +++E+N 
Sbjct: 258 AAVKAAAAVDYTGAGTIEFIFDHNTDEFYFMEMNT 292


>gi|238499611|ref|XP_002381040.1| hypothetical protein AFLA_092200 [Aspergillus flavus NRRL3357]
 gi|220692793|gb|EED49139.1| hypothetical protein AFLA_092200 [Aspergillus flavus NRRL3357]
          Length = 100

 Score = 73.2 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 37/92 (40%), Gaps = 3/92 (3%)

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF--DPLSRKVFWLEINVQPGMT 269
               P  +     K   ++A  A +++GCR   R D  F  D        LE+N   G+ 
Sbjct: 4   VRHDPGLMAEPQVKVACQVALDAWRSLGCRDAGRVDIRFSSDEHDAVPNVLELNPISGLL 63

Query: 270 P-VSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           P  S  P  A   G  ++ LL  +++ A   +
Sbjct: 64  PGHSPLPSSAEENGLPYKRLLAAIIQSALTRK 95


>gi|193078420|gb|ABO13406.2| putative geranyl-CoA carboxylase alpha subunit [Acinetobacter
           baumannii ATCC 17978]
          Length = 646

 Score = 73.2 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 34/198 (17%), Positives = 69/198 (34%), Gaps = 14/198 (7%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD----SQHLISPPYVIK 131
           +I +      A  L   K  SK  +   GVP  P    +R  ++        I  P ++K
Sbjct: 100 QITFIGPTASAIELMGSKRLSKIAMIEAGVPCVPGYEGDRQDLEYLATQAEQIGFPIMVK 159

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSS-----SWNHGDQLLIEQYVDGIELTCGVMGDAS 186
              GG   G+ ++++   +   L  +      ++  G+ +L +  +    +   V GD  
Sbjct: 160 ASAGGGGRGMRLVQQASELFEALQTARSEAENAFGSGELILEKAVIAPRHVEIQVFGDTH 219

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRS 246
            +   +            K             +  ++ +++   A  A +A    G    
Sbjct: 220 GNYVYLFERDCSIQRRHQK----VVEEAPCPVMTPELRQKMGEAAVAAAKACAYVGAGTV 275

Query: 247 DFLFDPLSRKVFWLEINV 264
           +FL D      ++LE+N 
Sbjct: 276 EFLLDAS-GAFYFLEMNT 292


>gi|70733441|ref|YP_263216.1| pyruvate carboxylase subunit A [Pseudomonas fluorescens Pf-5]
 gi|68347740|gb|AAY95346.1| acetyl-CoA carboxylase, biotin carboxylase [Pseudomonas fluorescens
           Pf-5]
          Length = 471

 Score = 73.2 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 76/221 (34%), Gaps = 20/221 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            LH  +G   E+  +  I     I +            DK  +++ +   GVPV P    
Sbjct: 76  ALHPGYGFLSENAELADICAERGIKFIGPSAEVIRRMGDKTEARRSMIKAGVPVTPGTEG 135

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGD 164
            +      +     I  P ++K   GG   GI      + +           + ++   +
Sbjct: 136 NVADIHEALSEGDRIGYPVMLKATSGGGGRGIRRCNSREELEQAFPRVISEATKAFGSAE 195

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDI 223
             L +  V+   +   ++GD+  +V  +            K        + P  ++  + 
Sbjct: 196 VFLEKCIVNPKHIEAQILGDSFGNVVHLFERDCSIQRRNQKL-----IEIAPSPQLTPEQ 250

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              +  L+  A +A+G       +FL      +V+++E+N 
Sbjct: 251 RAYIGDLSVRAAKAVGYENAGTVEFLL--AEGEVYFMEMNT 289


>gi|217423125|ref|ZP_03454627.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Burkholderia
           pseudomallei 576]
 gi|217394033|gb|EEC34053.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Burkholderia
           pseudomallei 576]
          Length = 484

 Score = 73.2 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 77/220 (35%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+    A +E   + +        A   DK R+++     GVP  P    
Sbjct: 95  AIHPGYGFLSENADFAAQVEAAGLIFVGPPARVIATMGDKARARETARRAGVPTVPGSEG 154

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK----DQSIPLDLLQSSSWNHGDQ 165
            +       +    I  P +IK   GG   GI V          +PL   ++ +      
Sbjct: 155 VVASLDGAHEVAARIGYPVMIKAAAGGGGRGIRVAHDAAQLAAQLPLAQREAQAAFGDGG 214

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+++     +   ++GD   +V  +   +        K             +   + 
Sbjct: 215 VYLERFIARARHIEVQILGDGE-NVIHLFERECSLQRRRQKIL----EEAPSPSLTPALR 269

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +   A    + +G RG    ++LFD    + +++E+N 
Sbjct: 270 DALCASATRLARQVGYRGAGTLEYLFDDARGEFYFIEMNT 309


>gi|149378054|ref|ZP_01895777.1| acetyl-CoA carboxylase, biotin carboxylase [Marinobacter algicola
           DG893]
 gi|149357664|gb|EDM46163.1| acetyl-CoA carboxylase, biotin carboxylase [Marinobacter algicola
           DG893]
          Length = 473

 Score = 73.2 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 79/221 (35%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            LH  +G   E+  + AI +   + +      A +   DK +++Q   + GVPV P    
Sbjct: 77  ALHPGYGFLSENAELAAICQQRGVTFIGPSAEAISAMGDKTQARQTAIAAGVPVTPGSEG 136

Query: 114 NRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGD 164
           N   ++        +  P ++K   GG   GI     ++ +  +        + ++   +
Sbjct: 137 NLDDVEDAVRQAEDVGYPVMLKATSGGGGRGIRRCDNEKELRQNYERVISEATKAFGSAE 196

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDI 223
             L +  ++   +   V+ D   +V  +            K        V P  ++  + 
Sbjct: 197 VFLEKCIIEPRHIEVQVLADHHGNVVHLYERDCSIQRRNQKL-----IEVAPSPQLSEEQ 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +  LA    +  G       +FL D      +++E+N 
Sbjct: 252 RETIGELAIQVTRQCGYVNAGTVEFLLD-HDDSFYFMEMNT 291


>gi|148668300|gb|EDL00630.1| propionyl-Coenzyme A carboxylase, alpha polypeptide, isoform CRA_a
           [Mus musculus]
          Length = 699

 Score = 73.2 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 74/221 (33%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      L   ++ +      A     DK+ SK +     V   P    
Sbjct: 134 AVHPGYGFLSENKEFAKRLAAEDVTFIGPDTHAIQAMGDKIESKLLAKRAKVNTIPGFDG 193

Query: 112 LVNRFTMDS--QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGD 164
           +V            I  P +IK   GG   G+ +   D+             +SS+   D
Sbjct: 194 VVKDADEAVRIAREIGYPVMIKASAGGGGKGMRIAWDDEETRDGFRFSSQEAASSFG-DD 252

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           +LLIE+++D    +   V+GD   +   +   +        K             +  + 
Sbjct: 253 RLLIEKFIDNPRHIEIQVLGDKHGNALWLNERECSIQRRNQK----VVEEAPSIFLDPET 308

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +   A    +A+        +FL D      ++LE+N 
Sbjct: 309 RQAMGEQAVALAKAVKYSSAGTVEFLVDSQKN-FYFLEMNT 348


>gi|28379200|ref|NP_786092.1| carbamoyl phosphate synthase large subunit [Lactobacillus plantarum
           WCFS1]
 gi|29337221|sp|P77886|CARB_LACPL RecName: Full=Carbamoyl-phosphate synthase pyrimidine-specific
           large chain; AltName: Full=Carbamoyl-phosphate
           synthetase ammonia chain
 gi|28272038|emb|CAD64943.1| carbamoyl-phosphate synthase, pyrimidine-specific, large chain
           [Lactobacillus plantarum WCFS1]
          Length = 1058

 Score = 73.2 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 49/286 (17%), Positives = 103/286 (36%), Gaps = 33/286 (11%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQID-------VDRSVG--------------LV 45
           G ++E + S   G     AL++  ++V  ++        D+ +                +
Sbjct: 21  GQAAEFDYS---GTQACLALKELDYEVVLVNSNPATIMTDKEIADQVYLEPITLEFVSQI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           L    PD     L G  G +  ++     IL+ L I    + + A   + D+ + K ++ 
Sbjct: 78  LRKEHPDAILPTLGGQQGLNMAMELSKSGILDELHIELLGTKLSAIDQAEDREQFKALME 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G PV  S +       +        P +++P       G  + +  Q +        +
Sbjct: 138 ELGEPVPASGIARTVDEALAFAKQAGYPVIVRPAFTMGGTGGGIAETPQQLHDITENGLA 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   Q+LIEQ + G  E+   VM DA+ +   + V   + +     ++  +  +     
Sbjct: 198 LSPVTQVLIEQSIAGYKEIEFEVMRDAADNA--MVVCNMENFDPVGIHTGDSIVYAPVQT 255

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +     + ++  A    +A+   G        DP S   + +E+N 
Sbjct: 256 LADREVQLLRDAALKIIRALKIEGGCNVQLALDPNSFNYYIIEVNP 301



 Score = 69.8 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 24/192 (12%), Positives = 66/192 (34%), Gaps = 9/192 (4%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQHLISPPYVIKPL 133
            I    + +     + D+    +V+ +  +P       +     +     +  P +++P 
Sbjct: 650 GIKILGTSVADVNRAEDRDEFDKVIKALAIPQPAGDTASDEATALAIADKLGYPVLVRPS 709

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
                  + ++KK   +   +  +   +H   +L++ Y+ G E     + D    +    
Sbjct: 710 YVLGGRAMEIVKKRTDLDYYMHNAVKVSHDHPVLVDSYLVGKECEVDAICDGQTVLIPGI 769

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
           +   +           +S  V P + +   +  ++         A+ C G+    F+   
Sbjct: 770 MEHIERAGVHS----GDSMAVYPPQSLSAAVQAQIVDYTEKLAIALNCVGMMNIQFVIH- 824

Query: 253 LSRKVFWLEINV 264
              +V+ +E+N 
Sbjct: 825 -DDQVYVIEVNP 835


>gi|127514146|ref|YP_001095343.1| carbamoyl-phosphate synthase L chain, ATP-binding [Shewanella loihica
            PV-4]
 gi|126639441|gb|ABO25084.1| Carbamoyl-phosphate synthase L chain, ATP-binding [Shewanella loihica
            PV-4]
          Length = 1516

 Score = 73.2 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 86/221 (38%), Gaps = 18/221 (8%)

Query: 57   VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
             LH   G   E     A+     + +    + +     +K  + +   S  VPV P    
Sbjct: 1018 ALHPGIGFLSESPQFAALCVNNGVNFVGPSVHSMTTMGNKSNAIKTSQSQNVPVVPGSHG 1077

Query: 111  -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI-----PLDLLQSSSWNHGD 164
             +      ++  + I  P ++K ++GG   GI V+++ + +           ++++ +GD
Sbjct: 1078 ILTNAEQAVNVANEIGYPVLLKAVQGGGGKGIQVVQRPEDMISLFQKTSTEAAAAFGNGD 1137

Query: 165  QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
              L E+YV     +   ++ D   +   + +          K    + + +    +P ++
Sbjct: 1138 LYL-EKYVTSLRHIEVQLLRDKFGNTKVLGLRDCSVQRNNQKVIEESGSTM----LPEEL 1192

Query: 224  YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             ++V         A    G    +F+++  + +V+++E+N 
Sbjct: 1193 KQQVMEYTRALGDATDYMGAGTVEFIYNLDANEVYFMEMNT 1233


>gi|57168907|ref|ZP_00368037.1| carbamoyl-phosphate synthase, large subunit [Campylobacter coli
           RM2228]
 gi|305431942|ref|ZP_07401109.1| acetyl-CoA carboxylase, biotin carboxylase [Campylobacter coli
           JV20]
 gi|57019743|gb|EAL56429.1| carbamoyl-phosphate synthase, large subunit [Campylobacter coli
           RM2228]
 gi|304445026|gb|EFM37672.1| acetyl-CoA carboxylase, biotin carboxylase [Campylobacter coli
           JV20]
          Length = 480

 Score = 73.2 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 91/222 (40%), Gaps = 20/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H  +G   E+       E   I +            +K  ++++++  G+P+ P    
Sbjct: 78  AIHPGYGFLSENYDFAKACEEAGIIFIGPKSEVIHKMGNKNIARKLMAQNGIPIVPGTEK 137

Query: 113 VNRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGD 164
           +N ++MD        I  P ++K   GG   GI V+ K++ +         ++ ++ + D
Sbjct: 138 LNAYSMDEIKVFAEKIGYPVILKASGGGGGRGIRVVHKEEELENAFDSCKREALTYFNND 197

Query: 165 QLLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
           ++ +E+Y V+   +   ++GD   ++  +            K        + P   I  +
Sbjct: 198 EVFMEKYVVNPRHIEFQILGDNYGNIIHLCERDCSIQRRHQK-----VIEIAPCPGISDN 252

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + K +   A  A +A+G       +FL D  +R  +++E+N 
Sbjct: 253 LRKTMGVTAVAAAKAVGYTNAGTIEFLLDDYNR-FYFMEMNT 293


>gi|327404012|ref|YP_004344850.1| 5-(carboxyamino)imidazole ribonucleotide synthase [Fluviicola
           taffensis DSM 16823]
 gi|327319520|gb|AEA44012.1| 5-(carboxyamino)imidazole ribonucleotide synthase [Fluviicola
           taffensis DSM 16823]
          Length = 368

 Score = 73.2 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 45/203 (22%), Positives = 74/203 (36%), Gaps = 18/203 (8%)

Query: 68  VQAI--LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS 125
           VQA+  LE   I          A+  DK   K+     G+P     L++         + 
Sbjct: 70  VQALHELEGRGIK-VFPQPAVLAIVQDKGLQKEFYQKNGLPTADFRLISGKEELLAKNLP 128

Query: 126 PPYVIKPLKGG-SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMG 183
            PYV+K  KGG    G+ +IK    +                LIEQ V    EL   V  
Sbjct: 129 FPYVLKWRKGGYDGKGVQIIKSTTDLEN--------LIDTPFLIEQLVPFTKELAVIVAR 180

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           + + +       + +F        +L      PA++  ++ KE + +A    Q++   GI
Sbjct: 181 NETGESVVYPTVECEFSPE----INLVEFLFAPAEVSQEVEKEAREIALKVIQSLNMVGI 236

Query: 244 SRSDFLFDPLSRKVFWLEINVQP 266
              +F       ++   EI  +P
Sbjct: 237 LAVEFFLTK-ENQLLINEIAPRP 258


>gi|169153848|emb|CAQ15408.1| propionyl-Coenzyme A carboxylase, alpha polypeptide [Danio rerio]
 gi|169158758|emb|CAQ15187.1| propionyl-Coenzyme A carboxylase, alpha polypeptide [Danio rerio]
          Length = 720

 Score = 73.2 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 74/221 (33%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      L    + +      A     DK+ SK +  +  V   P    
Sbjct: 130 AVHPGYGFLSENKEFAKRLAAEGVTFIGPDTHAIQAMGDKIESKLIAKAAKVNTIPGFDG 189

Query: 112 LVNRFTMDS--QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGD 164
           +V            I  P +IK   GG   G+ +   D+             +SS+   D
Sbjct: 190 VVKDAEEAVKIAGEIGYPVMIKASAGGGGKGMRIAWNDEETREGFRFSSQEAASSFG-DD 248

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           +LLIE+++D    +   V+ D   +   +   +        K             +  D 
Sbjct: 249 RLLIEKFIDNPRHIEIQVLADKHGNALWLNERECSIQRRNQK----VVEEAPSTFLDPDT 304

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +++   A    +A+        +FL D      ++LE+N 
Sbjct: 305 RRKMGEQAVSLAKAVKYSSAGTVEFLVDSKKN-FYFLEMNT 344


>gi|120609552|ref|YP_969230.1| acetyl-CoA carboxylase, biotin carboxylase [Acidovorax citrulli
           AAC00-1]
 gi|120588016|gb|ABM31456.1| acetyl-CoA carboxylase, biotin carboxylase [Acidovorax citrulli
           AAC00-1]
          Length = 449

 Score = 73.2 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 37/226 (16%), Positives = 82/226 (36%), Gaps = 29/226 (12%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+      +E     +      +     DK+ +KQ +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAERVEKSGFQFIGPTPESIRTMGDKVSAKQAMIRAGVPCVPGSDG 136

Query: 111 ------ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSW 160
                 + + R        +  P +IK   GG   G+ V+  + ++   +     ++ + 
Sbjct: 137 ELPDDPVQIRR----IARSVGYPVIIKAAGGGGGRGMRVVHTEAALVNAVQMTKAEAQAA 192

Query: 161 NHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK- 218
                + +E+++ +   +   V+ D   +   +            K          PA  
Sbjct: 193 FGNPAVYMEKFLQNPRHIEIQVLADKFRNAVYLGERDCSMQRRHQK-----VIEEAPAPG 247

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           IP  + +++      A + IG RG    +FL+   + + +++E+N 
Sbjct: 248 IPRKLIEKIGERCVAACKKIGYRGAGTFEFLY--ENGEFYFIEMNT 291


>gi|71022335|ref|XP_761397.1| hypothetical protein UM05250.1 [Ustilago maydis 521]
 gi|46101266|gb|EAK86499.1| hypothetical protein UM05250.1 [Ustilago maydis 521]
          Length = 853

 Score = 73.2 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 47/265 (17%), Positives = 100/265 (37%), Gaps = 24/265 (9%)

Query: 18  SGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFN----VLHGNFG---EDGLVQ- 69
           S +  A A       V  +  D +  L +  L  ++A +     +H  +G   E+     
Sbjct: 65  SAEFVAHA--TTAINVGPMTTDDNPYLNIKKL-IEVALSHQCDAIHPGYGYLSENADFAD 121

Query: 70  AILELLEIPYTHSGILASALSMDKMRSKQVVS-----SCGVPVCPSILVNRFTMDSQHLI 124
           A+     I +            +K RSKQ++         + V          ++    I
Sbjct: 122 AVAATGRITFLGPRGDVMRSIGEKSRSKQLLQEKLGDDAHL-VPGYHGTAEINLEMAGKI 180

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD----QLLIEQYVDG-IELTC 179
             P +IK   GG   G+ ++++   +  ++ ++ S    +    +LL E+Y++G   +  
Sbjct: 181 GYPLMIKASSGGGGRGMRIVREPNQLASEIARARSEAQRNFGSSELLFERYIEGGKHIEV 240

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
            + GD   +V  +            K    +      A    ++ K + + A      + 
Sbjct: 241 QIFGDNHGNVYALGERDCSVQRRHQKIIEESPAVDCEA--DPELRKRIHKSAVTIGSLLS 298

Query: 240 CRGISRSDFLFDPLSRKVFWLEINV 264
            +G    +++FDP +++ F+LE+N 
Sbjct: 299 YQGAGTVEYIFDPKTKEFFFLEVNT 323


>gi|229593433|ref|YP_002875552.1| pyruvate carboxylase subunit A [Pseudomonas fluorescens SBW25]
 gi|229365299|emb|CAY53647.1| biotin carboxylase [Pseudomonas fluorescens SBW25]
          Length = 471

 Score = 73.2 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 76/221 (34%), Gaps = 20/221 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            LH  +G   E+  +  I     I +            DK  +++ +   GVPV P    
Sbjct: 76  ALHPGYGFLSENAELADICAERGIKFIGPSAEVIRRMGDKTEARRSMIKAGVPVTPGTEG 135

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGD 164
            +      +     I  P ++K   GG   GI      + +           + ++   +
Sbjct: 136 NVADIAEALTEGDRIGYPVMLKATSGGGGRGIRRCNSREELEQAFPRVISEATKAFGSAE 195

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDI 223
             L +  V+   +   ++GD+  +V  +            K        + P  ++  + 
Sbjct: 196 VFLEKCIVNPKHIEAQILGDSFGNVVHLFERDCSIQRRNQKL-----IEIAPSPQLTPEQ 250

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              +  L+  A +A+G       +FL      +V+++E+N 
Sbjct: 251 RAYIGDLSVRAAKAVGYENAGTVEFLL--AEGEVYFMEMNT 289


>gi|170759037|ref|YP_001787167.1| carbamoyl phosphate synthase large subunit [Clostridium botulinum
           A3 str. Loch Maree]
 gi|226700926|sp|B1KT07|CARB_CLOBM RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|169406026|gb|ACA54437.1| carbamoyl-phosphate synthase, large subunit [Clostridium botulinum
           A3 str. Loch Maree]
          Length = 1068

 Score = 73.2 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 42/280 (15%), Positives = 97/280 (34%), Gaps = 31/280 (11%)

Query: 22  CASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ--- 69
           C  AL+  G +   +         D D S  L    L  +   N++        ++Q   
Sbjct: 580 CVKALKKLGIETIIVNNNPETVSTDFDVSDKLYFEPLTEEDVLNIVEKEKPNGIILQFGG 639

Query: 70  -------AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV--PVCPSILVNRFTMDS 120
                    L+   IP   +      ++ D+ +  +++    +  P    I      ++ 
Sbjct: 640 QTAIKLAKFLKEKNIPILGTTAGQIDMAEDREKFDELLEKLQISRPKGKGIWSVEDGLEE 699

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P +++P       G+ +   ++ +   L  +   N  + +LI++Y+ G E+   
Sbjct: 700 TKKLGFPVLVRPSYVLGGQGMEITHDEKELVYYLSNAFQKNKKNPILIDKYLMGREIEVD 759

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
            + D    +    +   +       +S  + T      +  DI +++          IG 
Sbjct: 760 AISDGEDVLIPGIMEHLERAGV---HSGDSITMYPTQNVSKDIKEKILEYTKKLALGIGI 816

Query: 241 RGISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFP 275
           +G+    F+       ++ +E+N       P ++ VS  P
Sbjct: 817 KGMINIQFI--EFEGNLYVIEVNPRASRTVPYISKVSKVP 854



 Score = 47.0 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 58/291 (19%), Positives = 111/291 (38%), Gaps = 43/291 (14%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQID-------VDRSVGL--------------V 45
           G ++E + S   G      +++ G +V  I+        D+ V                V
Sbjct: 21  GQAAEFDYS---GTQACEGVKEEGVEVVLINSNPATIMTDKEVADKVYLEPLTVEFVEKV 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLV-------QAILELLEIPYTHSGILASALSMDKMRSKQ 98
           +A  +PD   ++L G  G+ GL        + IL+   +    + I +     D+   + 
Sbjct: 78  IAKERPD---SLLAGMGGQTGLNLAVELYDKGILKKCGVNVIGTSIESIKEGEDRELFRN 134

Query: 99  VVSSCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
           V+S    PV  S +V          + I  P +++P       G  + + ++ +   L  
Sbjct: 135 VMSRINEPVIQSEIVTDIENGKAFANKIGYPVIVRPAYTLGGTGGGIAESEEELDEILAL 194

Query: 157 SSSWNHGDQLLIEQYVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHV 214
               +   Q+L+E+ V G  E+   VM D+  + VT   +   D           +S  V
Sbjct: 195 GLQVSSIGQVLLEKSVKGWKEIEYEVMRDSRGNCVTVCNMENIDPVGIHT----GDSIVV 250

Query: 215 LPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            P++ +    Y+ ++  +     +IG +G     F  +P S +   +EIN 
Sbjct: 251 APSQTLSDKEYQMLRSASINIINSIGIKGGCNVQFALNPNSFEYAVIEINP 301


>gi|121998554|ref|YP_001003341.1| carbamoyl-phosphate synthase large subunit [Halorhodospira
           halophila SL1]
 gi|121589959|gb|ABM62539.1| carbamoyl-phosphate synthase large subunit [Halorhodospira
           halophila SL1]
          Length = 1073

 Score = 73.2 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 42/278 (15%), Positives = 100/278 (35%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D +            ++V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPETADAVYIEPVEWQTVSRIIEREQPDAVLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      +LE   +    +   A   + ++   +  ++  G+    + L
Sbjct: 89  TMGGQTALNCALDLVKHGVLERYGVEMIGASREAIDKAEEREAFRAAMARIGLETPRAEL 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                    +Q  +  P +I+P       G  +    +     + +    ++ +++L+E+
Sbjct: 149 ARSMAEAQAAQARMGFPVIIRPSYTLGGSGGGIAYNREEFNEIVERGLDLSYTNEVLLEE 208

Query: 171 YVDG-IELTCGVMGDASL-DVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            V G  E    V+ D     +   ++   D           +ST + PA+ +    Y+ +
Sbjct: 209 SVLGWKEYEMEVVRDRHDNAIIVCSIENLDPMGVHT----GDSTTIAPAQTLTDKEYQLM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RDASLAVLREIGVETGGSNVQFAINPDNGRMVIIEMNP 302



 Score = 62.8 bits (152), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 30/196 (15%), Positives = 78/196 (39%), Gaps = 8/196 (4%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ--HLISPPYV 129
           LE    P   +   +  L+ D+ R ++++    +   P+      T   Q    I  P V
Sbjct: 653 LEAAGTPIIGTSPDSIDLAEDRERFQELIGRIDLMQPPNRTARTETEALQLAAEIGYPLV 712

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++ ++  +   + ++   +H   +L+++++ D +E+    + D    
Sbjct: 713 VRPSYVLGGRAMEIVYEESELRQYMNEAVRVSHNSPVLLDRFLDDAVEVDVDAVSDGDQV 772

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           V    +   +       +S  ++  + P  +  D+   ++    L  + +G  G+    F
Sbjct: 773 VIGGIMQHIEQAGV---HSGDSACSIPPYTLGQDVQDRIREQVRLLARELGVVGLMNVQF 829

Query: 249 LFDPLSRKVFWLEINV 264
                 +++F LE+N 
Sbjct: 830 AI--QGQRIFLLEVNP 843


>gi|332519396|ref|ZP_08395863.1| acetyl-CoA carboxylase, biotin carboxylase [Lacinutrix algicola
           5H-3-7-4]
 gi|332045244|gb|EGI81437.1| acetyl-CoA carboxylase, biotin carboxylase [Lacinutrix algicola
           5H-3-7-4]
          Length = 450

 Score = 73.2 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 78/221 (35%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     I    +I +  +         DK  +K  + + GVP  P    
Sbjct: 77  AIHPGYGFLSENAKFSKICAEHDIKFIGASPDMIDKMGDKANAKSTMIAAGVPCVPGSEG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS-----SSWNHGD 164
            I               P ++K   GG   G+  + K + +      +     +++ + D
Sbjct: 137 VIETFEDCKKIAKETGYPVMLKASAGGGGKGMRAVWKPEDLQEAWESARQESKAAFGNDD 196

Query: 165 QLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
             + E+ ++    +   ++GD++     ++           K     +  V    +   +
Sbjct: 197 MYM-EKLIEEPRHIEIQIVGDSNGKACHLSERDCSVQRRHQK----LTEEVPSPFMTPAL 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            K++   A  A + I   G    +FL D   R  +++E+N 
Sbjct: 252 RKKMGEAAVKAAEYIKYEGAGTVEFLVDKH-RNFYFMEMNT 291


>gi|313672200|ref|YP_004050311.1| biotin carboxylase; acetyl-CoA carboxylase carboxyltransferase
           subunit alpha [Calditerrivibrio nitroreducens DSM 19672]
 gi|312938956|gb|ADR18148.1| biotin carboxylase; acetyl-CoA carboxylase carboxyltransferase
           subunit alpha [Calditerrivibrio nitroreducens DSM 19672]
          Length = 445

 Score = 73.2 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 74/220 (33%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     I E     +         L  +K  +K+ +   GVPV P    
Sbjct: 77  AIHPGYGFLAENATFAKICEECGFTFIGPSPEHIDLMGNKSNAKETMKKLGVPVVPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD----QSIPLDLLQSSSWNHGDQ 165
            I   +  +     I  P +IK   GG   G+ +   D    ++     +++ +    D+
Sbjct: 137 PIKDAKEALSFAKKIGFPVMIKASAGGGGKGMRMAHNDITFLKNFETAKMEAKNAFGNDE 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+ + D   +   V GD +         +        K             I     
Sbjct: 197 VYIEKLIEDPRHIEIQVFGDGNGKGLHFFERECSIQRRHQKLL----EEAPSIAIDDATR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K +  ++  A   +  +     ++L D      +++E+N 
Sbjct: 253 KRMGEVSANAIAQLKYKNAGTIEYLLDKHGN-FYFMEMNT 291


>gi|310658734|ref|YP_003936455.1| hypothetical protein CLOST_1430 [Clostridium sticklandii DSM 519]
 gi|308825512|emb|CBH21550.1| protein of unknown function [Clostridium sticklandii]
          Length = 408

 Score = 73.2 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 45/224 (20%), Positives = 94/224 (41%), Gaps = 24/224 (10%)

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ-HLISPPYVIK 131
           E L +P+    +  +    +K + KQ+     +P      +++  M+ +   ++PPYVIK
Sbjct: 81  EELGLPF-CIDVETAVNVTNKSKMKQIFEKNNIPTAKFRFISKNFMEEELSNLNPPYVIK 139

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC-GVMGDASLDVT 190
           P+      G+  +   + I  D+    +++  +  LIE+Y +  E+T  G + +  L + 
Sbjct: 140 PIDSQGQRGVYKLNTIEEIKTDIDSVLTFSRDNIALIEEYYESDEITVSGWVYNKKLKIL 199

Query: 191 EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR-GISRSDFL 249
            I   ++ F S   K+  +  +HV P+K     YKE+  ++     A     G     + 
Sbjct: 200 TI-TDRNTFSS--GKHIGICKSHVFPSKYYDKYYKEIHDISERITTAFNIENGPIY--YQ 254

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
               +R +   EI               AA  G ++ ++ + ++
Sbjct: 255 LLIGNRGIIVNEI---------------AARIGGAYEDIFIPII 283


>gi|295107546|emb|CBL05089.1| carbamoyl-phosphate synthase large subunit [Gordonibacter pamelaeae
           7-10-1-b]
          Length = 1074

 Score = 73.2 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 46/278 (16%), Positives = 92/278 (33%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG      L+  G++V  +         D                V  V+   +PD    
Sbjct: 29  SGAQACKVLKADGYRVVLVNSNPATIMTDPGLADRTYVEPITPEFVEQVIVKERPDALLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G  G +  V      IL+   +      + A     D+    + ++  G+    S  
Sbjct: 89  TLGGQTGLNTAVDLARAGILDKYGVEMIGCDLAAIERGEDRKLFNECMAELGIETSRSGY 148

Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                        +  P V++P       G  +      +   + Q    +   ++L+E+
Sbjct: 149 AYSLADAEAIVAELGYPVVLRPSFTLGGAGGGIAHDQAELHEIVGQGLELSPAGEVLVEE 208

Query: 171 YVDG-IELTCGVMGDASL-DVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            ++G  E    VM D +   +   ++   D           +S  V PA+ +    Y+ +
Sbjct: 209 SIEGWKEYEMEVMRDHAGNGIIVCSIENFDAMGVHT----GDSITVAPAQTLSDVEYQRM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RAASLAILEKIGVETGGSNVQFAVNPDNGRMIVIEMNP 302



 Score = 53.6 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 26/224 (11%), Positives = 79/224 (35%), Gaps = 12/224 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGV--PVCPSILVNRFTMDSQHLISPPYV 129
           L    +P   +   A  L+ D+ R   ++    +  P        +        I  P +
Sbjct: 653 LAEAGVPIMGTSPEAIDLAEDRDRFSAILDEMAITYPAAGMASTYQEACVVADQIGFPLL 712

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLD 188
           ++P       G+ ++     +   + +++  +    + ++++++G +E+    + D S  
Sbjct: 713 VRPSYVLGGRGMGIVYDGAQLEKYMAEAAKISPDHPVYLDRFLEGAVEVDLDALCDGSQV 772

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                +   +       +S  ++    P  +   +  +++ +A      +G  G+    F
Sbjct: 773 YVGGVLEHIEMAGI---HSGDSACCTPPFALSEALVSQLRSVARDLALRLGVVGLINIQF 829

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
                 + ++ +E N +   T     P ++   G    ++   +
Sbjct: 830 AI--KDQVIYIIEANPRASRT----VPFVSKATGVPLAKMAARI 867


>gi|255262145|ref|ZP_05341487.1| methylcrotonoyl-CoA carboxylase subunit alpha [Thalassiobium sp.
           R2A62]
 gi|255104480|gb|EET47154.1| methylcrotonoyl-CoA carboxylase subunit alpha [Thalassiobium sp.
           R2A62]
          Length = 663

 Score = 73.2 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 77/221 (34%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      L    + +    + A     DK+ SK++    GV   P  + 
Sbjct: 77  AVHPGYGFLSENSKFAEALAAEGVAFIGPPVGAIEAMGDKITSKKLAQEAGVSTVPGYMG 136

Query: 114 NRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGD 164
                D      + +  P +IK   GG   G+ +   DQ             ++S+   D
Sbjct: 137 LIEDADDAVKISNEVGYPVMIKASAGGGGKGMRIAWSDQEAREGFQSSKNEAANSFG-DD 195

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           ++ IE++V     +   V+ D+  +   +   +        K             +  + 
Sbjct: 196 RIFIEKFVTQPRHIEIQVLADSHGNTIYLNERECSIQRRNQK----VVEEAPSPFLDEET 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + + + +     A+G       +F+ D   R  ++LE+N 
Sbjct: 252 RQAMGKQSCDLAAAVGYTSAGTVEFIVDG-DRNFYFLEMNT 291


>gi|225010288|ref|ZP_03700760.1| acetyl-CoA carboxylase, biotin carboxylase [Flavobacteria bacterium
           MS024-3C]
 gi|225005767|gb|EEG43717.1| acetyl-CoA carboxylase, biotin carboxylase [Flavobacteria bacterium
           MS024-3C]
          Length = 448

 Score = 73.2 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 81/220 (36%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---S 110
            +H  +G   E+     I     I +  +         DK  +K+ +   GVP  P    
Sbjct: 77  AIHPGYGFLSENAKFSRICAEHGIKFIGASGDQIDKMGDKATAKETMKKAGVPCVPGSAG 136

Query: 111 ILVN-RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS----IPLDLLQSSSWNHGDQ 165
           IL + +  + +   +  P +IK   GG   G+  + K++         + ++++      
Sbjct: 137 ILKDVKDAIATAKKVGYPVMIKATAGGGGKGMRAVWKEEDMTKLFESAVQEATAAFGNGG 196

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+ ++    +   V+GD       ++           K     +       +   + 
Sbjct: 197 MYMEKLIEEPRHIEIQVVGDQFGKACHLSERDCSVQRRHQK----LTEETPSPFMTDKLR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +E+   A  A + I   G    +FL D   RK +++E+N 
Sbjct: 253 EEMGNAAVKAAEFIKYEGAGTIEFLVDKH-RKFYFMEMNT 291


>gi|169335520|ref|ZP_02862713.1| hypothetical protein ANASTE_01934 [Anaerofustis stercorihominis DSM
           17244]
 gi|169258258|gb|EDS72224.1| hypothetical protein ANASTE_01934 [Anaerofustis stercorihominis DSM
           17244]
          Length = 1074

 Score = 73.2 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 49/287 (17%), Positives = 104/287 (36%), Gaps = 35/287 (12%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQIDVD---------------------RSVGLV 45
           G ++E + S   G     A+ + GF+V  I+ +                      SV  +
Sbjct: 21  GQAAEFDYS---GTQACEAIREEGFEVVLINSNPATIMTDKQTADKVYIEPITLESVVKI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   +PD     + G    +  ++     IL+   I    + +       D+   ++++ 
Sbjct: 78  IEKERPDAIIGGMGGQTALNMTMELHNKGILDKYGIKVIGTSVEGIMKGEDRDEFRKLMQ 137

Query: 102 SCGVPVCPSILVNRFTMDSQHLI--SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G P+  S +VN      +  +    P V++P       G  ++  +  +        S
Sbjct: 138 EIGQPIIESRIVNTLEDAKKAALDIGYPVVVRPAYTLGGTGGGIVNNEDELLKIAESGLS 197

Query: 160 WNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   Q+LIE+ +    E+   VM D++     I   ++      +   + +S  V P +
Sbjct: 198 LSMTTQILIEKSIKNWKEIEYEVMRDSNGTCITICNMEN---IDPVGIHTGDSIVVAPTQ 254

Query: 219 -IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +     + ++  +    +A+G  G     F   P S +   +EIN 
Sbjct: 255 TLSDKECQMLRSASLDIIEAVGIEGGCNVQFALHPDSMEYAIIEINP 301



 Score = 70.2 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 31/210 (14%), Positives = 79/210 (37%), Gaps = 14/210 (6%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTMDSQHLISPPYVIKPL 133
            IP   +   +   + D+ R + ++S  GV       +       +    I  P +++P 
Sbjct: 653 NIPILGTSPDSIDKAEDRERFEAMLSKLGVKQPKGKGVFTVEEGKEIAQKIGYPVLVRPS 712

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC-GVMGDASLDVTEI 192
                 G+++   ++S+   L  +   +  + +LI++Y+ G+E+    V     + V  I
Sbjct: 713 YVLGGRGMMICHDEESLIKYLTNAIKEDGKNPVLIDKYLFGLEVEVDAVCDGVDVFVPGI 772

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
                +       +S  ++T      +   I + +          +  +G+    F+   
Sbjct: 773 ----MEHLDRAGVHSGDSATLYPTRHVSDKIKETLYDYTRKIALELNVKGMINIQFIVFK 828

Query: 253 LSRKVFWLEIN-----VQPGMTPVSIFPEM 277
              +++ +E+N       P +T ++  P +
Sbjct: 829 --DELYVIEVNPRSSRTVPYITKITNVPIL 856


>gi|126338768|ref|XP_001364528.1| PREDICTED: similar to pyruvate carboxylase [Monodelphis domestica]
          Length = 1175

 Score = 73.2 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 32/205 (15%), Positives = 74/205 (36%), Gaps = 17/205 (8%)

Query: 69  QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI---- 124
           QA L+   I +            DK+R++ +  + GVPV P       ++   H      
Sbjct: 127 QACLD-AGIKFIGPSPEVVRKMGDKVRARPIPIAAGVPVVPGTDTPISSLHEAHEFSKTY 185

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPL----DLLQSSSWNHGDQLLIEQYVD-GIELTC 179
             P + K   GG   G+ V++  + +         ++ +      L +E++++    +  
Sbjct: 186 GLPIIFKAAYGGGGRGMRVVQNFEELDENFNRAYSEALAAFGDGTLFVEKFIENPRHIEV 245

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAI 238
            ++GD   ++  +            K        + PA  +   +   +   +    + +
Sbjct: 246 QILGDQHGNIVHLYERDCSIQRRHQK-----VVEIAPATLLDTQLRNRLTSDSVKLGKQV 300

Query: 239 GCRGISRSDFLFDPLSRKVFWLEIN 263
           G       +FL D   +  +++E+N
Sbjct: 301 GYENAGTVEFLIDKHGKH-YFIEVN 324


>gi|167036382|ref|YP_001671613.1| pyruvate carboxylase subunit A [Pseudomonas putida GB-1]
 gi|166862870|gb|ABZ01278.1| acetyl-CoA carboxylase, biotin carboxylase [Pseudomonas putida
           GB-1]
          Length = 471

 Score = 73.2 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 77/221 (34%), Gaps = 20/221 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            LH  +G   E+  +  I     I +            DK  +++ + + GVPV P    
Sbjct: 76  ALHPGYGFLSENAELAEICAERGIKFIGPAADVIRRMGDKTEARRTMIAAGVPVTPGTEG 135

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGD 164
            +      +     I  P ++K   GG   GI      + +  +        + ++   +
Sbjct: 136 NVADIHEALSEGERIGYPVMLKATSGGGGRGIRRCNSREELEQNFPRVISEATKAFGSAE 195

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDI 223
             L +  V+   +   ++GD+  +V  +            K        + P  ++  + 
Sbjct: 196 VFLEKCIVNPKHIEAQILGDSFGNVVHLFERDCSIQRRNQKL-----IEIAPSPQLTPEQ 250

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              +  LA  A +A+        +FL      +V+++E+N 
Sbjct: 251 RAYIGDLAVRAAKAVNYENAGTVEFLL--ADGEVYFMEMNT 289


>gi|90407817|ref|ZP_01215994.1| 5'-phosphoribosylglycinamide transformylase [Psychromonas sp.
           CNPT3]
 gi|90311082|gb|EAS39190.1| 5'-phosphoribosylglycinamide transformylase [Psychromonas sp.
           CNPT3]
          Length = 396

 Score = 73.2 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 51/244 (20%), Positives = 96/244 (39%), Gaps = 24/244 (9%)

Query: 31  FKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
           + VS +D  + +  ++ H KPD     +      D LVQ  LE            A+ L+
Sbjct: 59  YVVSMLDAAK-LEEIIRHEKPDFIIPEVEAI-ATDTLVQ--LEQQGFNVI-PSARATKLT 113

Query: 91  MDKM-RSKQVVSSCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147
           MD+    + V     +P  P I V+     +D+   I  P VIKP+   S  G  VI+  
Sbjct: 114 MDREGIRRLVAEQLLIPTTPYIFVDNKAQFIDAIDNIGLPCVIKPVMSSSGKGQSVIRTH 173

Query: 148 QSIPLDLL--QSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP---KSDFYSY 202
             +       Q +  +   ++++E ++D  +    ++   ++D      P   + +   Y
Sbjct: 174 ADVDNAWQHSQEAGRSGAGRVILEGFID-FDYEITLLTICAVDGIHFCAPIGHRQEKGDY 232

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
              +         P K+P    K+ Q +A      +G  G+   +F        V++ E+
Sbjct: 233 RESW--------QPQKMPEQALKKAQDIARKVVTELGGYGLFGMEFFI--KGEHVYFNEV 282

Query: 263 NVQP 266
           + +P
Sbjct: 283 SPRP 286


>gi|291563076|emb|CBL41892.1| carbamoyl-phosphate synthase, large subunit [butyrate-producing
           bacterium SS3/4]
          Length = 1066

 Score = 73.2 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 39/225 (17%), Positives = 84/225 (37%), Gaps = 13/225 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTMDSQHLISPPYV 129
           L  + +P   +       + D+    +++  C +P      V        + + +  P +
Sbjct: 649 LMKMGVPILGTAAEDVDAAEDRELFDEILEQCQIPRAKGQTVFTAEEAKKAANELGYPVL 708

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           ++P       G+ +   D+ I   +   +       +L+++Y+ G E+    + D     
Sbjct: 709 VRPSYVLGGQGMQIAICDEDIDEFIGIINRIAQEHPILVDKYIMGKEIEVDAICDG---- 764

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           T+I +P    +       S +S  V PAK I  D  K +        +A+  +G+    F
Sbjct: 765 TDILIPGIMEHIERTGIHSGDSISVYPAKSITEDNKKTIVEYTEKLARALHVKGMINIQF 824

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           + +     VF +E+N +   T     P ++   G     L   ++
Sbjct: 825 IVNDEG--VFIIEVNPRSSRT----VPYISKVTGIPIVPLATQII 863



 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 50/286 (17%), Positives = 100/286 (34%), Gaps = 33/286 (11%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI-----------DV----------DRSVGLV 45
           G ++E + +   G     +L++ G +V  +           D+             V  +
Sbjct: 21  GQAAEFDYA---GTQACRSLKEEGIEVVLLNSNPATIMTDKDIADRVYIEPLTTEVVEQL 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   KPD     L G  G +  ++     IL+   +    +  L    + D+   K+ + 
Sbjct: 78  IKKEKPDSVLPTLGGQAGLNLAMELEEAGILKANNVRLIGTTALTIKKAEDREMFKETME 137

Query: 102 SCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G PV PS +V      +     I  P V++P       G  +   ++     L     
Sbjct: 138 KIGEPVAPSEIVEDVNTGLAVAKEIGYPVVLRPAYTLGGSGGGIAYNEEQCAEILENGLR 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   Q+L+E+ + G  E+   VM D + +V  I V   +       ++  +        
Sbjct: 198 LSRVGQVLVERCIAGWKEIEYEVMRDGAGNV--ITVCNMENIDPVGVHTGDSIVVAPSQT 255

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +    Y+ ++  A      +G  G     +   P S +   +E+N 
Sbjct: 256 LGDKEYQMLRTSALKIITELGITGGCNVQYALHPESFEYCVIEVNP 301


>gi|227486985|ref|ZP_03917301.1| acyl coenzyme A carboxylase [Corynebacterium glucuronolyticum ATCC
           51867]
 gi|227093059|gb|EEI28371.1| acyl coenzyme A carboxylase [Corynebacterium glucuronolyticum ATCC
           51867]
          Length = 600

 Score = 73.2 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 35/222 (15%), Positives = 71/222 (31%), Gaps = 19/222 (8%)

Query: 56  NVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
           N +H  +G   E+G     +    + +      +     DK+ ++ +      P+ P   
Sbjct: 89  NAIHPGYGFLSENGDFAEAVINAGLIWIGPSPQSIRDLGDKVTARHIAERANAPMAPGTK 148

Query: 113 VNRFTMDS----QHLISPPYVIKPLKGGSSLGIIVI----KKDQSIPLDLLQSSSWNHGD 164
                 D           P  IK   GG   G+ V     +          ++++     
Sbjct: 149 DPVKDADEVVKFAEEHGLPIAIKAAFGGGGRGMKVAYTMDEVKDQFESATREATTAFGRG 208

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
           +  +E+Y+D    + C V+GD   +V  +           L+          PA  +  +
Sbjct: 209 ECFVERYLDRARHVECQVLGDQHGNVVVVGT-----RDCSLQRRFQKVVEEAPAPYLTDE 263

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
               +   A    +  G  G    ++L       + +LE+N 
Sbjct: 264 QRTRLHESAKAICKEAGYYGAGTVEYLV-GSDGLISFLEVNT 304


>gi|149050264|gb|EDM02588.1| rCG36968, isoform CRA_c [Rattus norvegicus]
          Length = 698

 Score = 73.2 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 74/221 (33%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      L   ++ +      A     DK+ SK +     V   P    
Sbjct: 133 AVHPGYGFLSENKEFAKCLAAEDVTFIGPDTHAIQAMGDKIESKLLAKRAKVNTIPGFDG 192

Query: 112 LVNRFTMDS--QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGD 164
           +V            I  P +IK   GG   G+ +   D+             +SS+   D
Sbjct: 193 VVKDADEAVRIAREIGYPVMIKASAGGGGKGMRIAWDDEETRDGFRFSSQEAASSFG-DD 251

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           +LLIE+++D    +   V+GD   +   +   +        K             +  + 
Sbjct: 252 RLLIEKFIDNPRHIEIQVLGDKHGNALWLNERECSIQRRNQK----VVEEAPSIFLDPET 307

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +   A    +A+        +FL D      ++LE+N 
Sbjct: 308 RRAMGEQAVALAKAVKYSSAGTVEFLVDSQKN-FYFLEMNT 347


>gi|306781169|ref|ZP_07419506.1| pyruvate carboxylase pca [Mycobacterium tuberculosis SUMu002]
 gi|308326005|gb|EFP14856.1| pyruvate carboxylase pca [Mycobacterium tuberculosis SUMu002]
          Length = 1125

 Score = 73.2 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 38/247 (15%), Positives = 82/247 (33%), Gaps = 18/247 (7%)

Query: 28  DAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87
           D G  V        +         D  +   +G   E+  + A      I +        
Sbjct: 53  DIGHPVHAYLSVDEIVATARRAGADAIYPG-YGFLSENPDLAAACAAAGISFVGPSAEVL 111

Query: 88  ALSMDKMRSKQVVSSCGVPV----CPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIV 143
            L+ +K R+       G+PV     PS  V+   +     +  P  +K + GG   G+  
Sbjct: 112 ELAGNKSRAIAAAREAGLPVLMSSAPSASVDEL-LSVAAGMPFPLFVKAVAGGGGRGMRR 170

Query: 144 IKKDQSIPLDLLQS-----SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD 198
           +    ++P  +  +     S++      L +  ++   +   ++ D   DV  +      
Sbjct: 171 VGDIAALPEAIEAASREAESAFGDPTVYLEQAVINPRHIEVQILADNLGDVIHLYE---- 226

Query: 199 FYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
                ++        + PA  +  ++  ++   A    + IG       +FL D    + 
Sbjct: 227 -RDCSVQRRHQKVIELAPAPHLDAELRYKMCVDAVAFARHIGYSCAGTVEFLLDER-GEY 284

Query: 258 FWLEINV 264
            ++E+N 
Sbjct: 285 VFIEMNP 291


>gi|144897959|emb|CAM74823.1| carbamoyl-phosphate synthase, large chain [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 1083

 Score = 73.2 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 36/224 (16%), Positives = 84/224 (37%), Gaps = 12/224 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--QHLISPPYV 129
           LE   IP   +   +  L+ D+ R + ++   G+   P+               I  P V
Sbjct: 663 LEDAGIPILGTSPDSIDLAEDRERFQGLLHDLGLKQPPNGTARSLDEAKAVADRIGYPVV 722

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLD 188
           I+P        + ++   +++   + ++   +  D +LI+ Y+   IE+    + D +  
Sbjct: 723 IRPSFVLGGRAMQIVYDHEALERYMKEAVVVSGKDPVLIDFYLKNAIEVDVDALADGTDV 782

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                +   +       +S  ++  + P  +  D   E++R      +A+  RG+   + 
Sbjct: 783 FVAGIMQHIEEAGI---HSGDSACSLPPYSLDDDTIAELERQTVALAKALNVRGL--MNV 837

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
            +      ++ LE+N +   T     P +A   G    ++   +
Sbjct: 838 QYAVQDGVIYILEVNPRASRT----VPFVAKATGIPIAKIAARI 877



 Score = 55.9 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 45/278 (16%), Positives = 99/278 (35%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G++V  +         D                V  ++A  +PD    
Sbjct: 29  SGVQACKALKEEGYRVILVNSNPATIMTDPGLADATYIEPITPEVVAKIIAKERPDALLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  ++      LE   +    +     A + D++  +  +   G+    S +
Sbjct: 89  TMGGQTALNTAMKLADDGTLEKYGVEMIAAKRDVIAKAEDRLLFRDAMDKIGLDSPKSRV 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           V   +   +S   +  P +I+P    +  G  +    +     +    + +   ++L+E+
Sbjct: 149 VRTLQEARESLDFVGLPAIIRPSFTLAGTGGGIAYNIEEYENIVSGGLAASPVHEVLVEE 208

Query: 171 YVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEV 227
            V G  E    V+ D   + +   ++   D           +S  V PA  +    Y+ +
Sbjct: 209 SVLGWKEYEMEVVRDKKDNCIIICSIENVDPMGVHT----GDSITVAPALTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RNASLAVLREIGVDTGGSNVQFAVNPKNGRMTVIEMNP 302


>gi|313201202|ref|YP_004039860.1| acetyl-CoA carboxylase, biotin carboxylase [Methylovorus sp. MP688]
 gi|312440518|gb|ADQ84624.1| acetyl-CoA carboxylase, biotin carboxylase [Methylovorus sp. MP688]
          Length = 449

 Score = 73.2 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 45/250 (18%), Positives = 91/250 (36%), Gaps = 23/250 (9%)

Query: 32  KVSQIDVDRSVGLVLAHLKPDLAF----NVLHGNFG---EDGLVQAILELLEIPYTHSGI 84
           +   I  D  VG + AH   +LA     + LH  +G   E+  +  I     I +     
Sbjct: 24  EAYNIGSDPVVGYLNAHNIVNLAVASGCDALHPGYGFLSENPELAEICARRGIKFIGPDA 83

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSLG 140
                  DK++++  +   G+P  P    N   ++        I  P ++K   GG   G
Sbjct: 84  KVIRQMGDKIQARNAMIKAGIPCVPGSNGNLADLEEARTLARKIGYPVMLKATNGGGGRG 143

Query: 141 IIVIKKDQSIPLDL-----LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195
           I     ++ +  +        S ++   +  L +  V+   +   +M D+  +V  +   
Sbjct: 144 IRRCNDEKELLSNYDRVISEASKAFGKPEVFLEKCVVNPKHIEVQIMADSHGNVIHLFER 203

Query: 196 KSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
                    K        + P  ++     + + +LA  A +A+G +     +FL D   
Sbjct: 204 DCSIQRRNQKL-----IEIAPSPQLSNAQREYIGKLAVKAAKAVGYKNAGTVEFLLD-SD 257

Query: 255 RKVFWLEINV 264
              +++E+N 
Sbjct: 258 NSFYFMEMNT 267


>gi|298490305|ref|YP_003720482.1| phosphoribosylglycinamide formyltransferase 2 ['Nostoc azollae'
           0708]
 gi|298232223|gb|ADI63359.1| phosphoribosylglycinamide formyltransferase 2 ['Nostoc azollae'
           0708]
          Length = 389

 Score = 73.2 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 42/240 (17%), Positives = 82/240 (34%), Gaps = 25/240 (10%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
             +  V+   +PD     +     E   +Q   E   I        A+  +M++   +++
Sbjct: 61  DDLETVVTKHQPDFIIPEIEAIRTE--KLQE-FEQRGI-IVIPTATATNYTMNRDIIREL 116

Query: 100 V-SSCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD--L 154
                GV              +     I  P V+KP+   S  G  V++    +      
Sbjct: 117 AHQELGVRTAEYRYAFTLEELITVSDEIGFPNVVKPVMSSSGKGQSVVQDRTEVEKAWSY 176

Query: 155 LQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKS--DFYSYELKYSSLNS 211
             S+S     ++++E++++  IE+T   +                 +   Y+  +     
Sbjct: 177 AISNSRGDSQKIIVEEFINFEIEITLLTIKQWDAPTIFCPPIGHSQERGDYQESW----- 231

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP---GM 268
               PA I  D     Q +A     A+G  GI   +F       +V + E++ +P   GM
Sbjct: 232 ---QPANISEDKILASQEIAKKVTDALGGAGIFGVEFFITK--DEVIFSELSPRPHDTGM 286


>gi|167722153|ref|ZP_02405389.1| acetyl-CoA carboxylase biotin carboxylase subunit [Burkholderia
           pseudomallei DM98]
          Length = 481

 Score = 73.2 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 77/220 (35%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+    A +E   + +        A   DK R+++     GVP  P    
Sbjct: 92  AIHPGYGFLSENADFAAQVEAAGLIFVGPPARVIATMGDKARARETARRAGVPTVPGSEG 151

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK----DQSIPLDLLQSSSWNHGDQ 165
            +       +    I  P +IK   GG   GI V          +PL   ++ +      
Sbjct: 152 VVASLDGAHEVAARIGYPVMIKAAAGGGGRGIRVAHDAAQLAAQLPLAQREAQAAFGDGG 211

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+++     +   ++GD   +V  +   +        K             +   + 
Sbjct: 212 VYLERFIARARHIEVQILGDGE-NVIHLFERECSLQRRRQKIL----EEAPSPSLTPALR 266

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +   A    + +G RG    ++LFD    + +++E+N 
Sbjct: 267 DALCASATRLARQVGYRGAGTLEYLFDDARGEFYFIEMNT 306


>gi|170724909|ref|YP_001758935.1| acetyl-CoA carboxylase, biotin carboxylase [Shewanella woodyi ATCC
           51908]
 gi|169810256|gb|ACA84840.1| acetyl-CoA carboxylase, biotin carboxylase [Shewanella woodyi ATCC
           51908]
          Length = 452

 Score = 73.2 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 74/221 (33%), Gaps = 21/221 (9%)

Query: 58  LHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS---- 110
           +H  +G   E+      ++     +            DK+ +   +   GVP  P     
Sbjct: 82  IHPGYGFLSENADFAEQVQRSGFTFIGPNADVIRKMGDKVSAISAMKKVGVPTVPGSDGV 141

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGDQ 165
               N+        I  P ++K   GG   G+ V+     +   +     ++ +      
Sbjct: 142 LTQDNKLNQQIAEKIGYPIIVKATAGGGGKGMRVVHHSDELIQAIELTQAEAKAAFANGD 201

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDI 223
           L +E+Y+     +   V+ D   +   +            K          PA +I    
Sbjct: 202 LYMEKYLQHPRHIEIQVLSDGQGNAIHLGERDCSMQRRHQK-----VLEEAPALEIDSAT 256

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             ++ +L   A   IG RG    +FLF+    + +++E+N 
Sbjct: 257 RSKIGKLCANACIEIGYRGAGTFEFLFEA--GEFYFIEMNT 295


>gi|116330483|ref|YP_800201.1| carbamoyl phosphate synthase large subunit [Leptospira
           borgpetersenii serovar Hardjo-bovis JB197]
 gi|116124172|gb|ABJ75443.1| Carbamoyl-phosphate synthase (glutamine- hydrolyzing), large
           subunit [Leptospira borgpetersenii serovar Hardjo-bovis
           JB197]
          Length = 1106

 Score = 73.2 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 55/278 (19%), Positives = 104/278 (37%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG   A AL++ G +V  +         D D              V  +L   KPD    
Sbjct: 29  SGTQAAKALKEKGIRVILLNSNPATIMTDPDLADATYVEPMTVPVVQKILEKEKPDAILP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      +LE   +    + + A   + D+   K+ +   GV V  S L
Sbjct: 89  TVGGQTALNLALACNGAGLLEKYNVELIGAKVDAIKKAEDRELFKKAMEKIGVRVPASGL 148

Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            N  T  ++    +  P +++P       G  +   +++    + +    +   Q+L+E+
Sbjct: 149 ANNLTDAAEIKKKLGLPLIVRPAFTLGGTGGGIAYTEETFEEVVSKGLKASPISQVLLEE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            V G  E    VM D + +V  I   ++ D           +S  V P + +    Y+ +
Sbjct: 209 SVLGWKEFELEVMRDLADNVVIICSIENIDPMGVHT----GDSITVAPQQTLSDKEYQNL 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           + ++    + IG   G S   F  +P +  V  +E+N 
Sbjct: 265 RDMSIAIIREIGVETGGSNIQFAVNPANEDVIVIEMNP 302



 Score = 47.8 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/198 (13%), Positives = 77/198 (38%), Gaps = 12/198 (6%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYV 129
           LE   +    +   +   + D+ R  +V+    +    S +        +    +  P +
Sbjct: 682 LERKGVKILGTSPDSIDRAEDRKRFVEVLEKLKLRSPESGIATSMEEAREIAQNVKYPIL 741

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTC-GVMGDASL 187
           ++P        +++I +++ +   + ++   +    LLI+ ++ D +E+    +     +
Sbjct: 742 VRPSYVLGGRAMLIINEEKELDRYMEKAEEISKDRPLLIDSFLEDAVEVDVDALCDGKEV 801

Query: 188 DVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRS 246
            VT I       +  E    S +S  +LP + +  ++  E+++        +  +G+   
Sbjct: 802 FVTGIME-----HIEEAGIHSGDSACILPPQTLSKNMMDEIRKATVDLALELQVKGLINI 856

Query: 247 DFLFDPLSRKVFWLEINV 264
            +     +  ++ +E+N 
Sbjct: 857 QYAV--KNEILYVIEVNP 872


>gi|327478859|gb|AEA82169.1| acetyl-CoA carboxylase subunit A [Pseudomonas stutzeri DSM 4166]
          Length = 471

 Score = 73.2 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 73/221 (33%), Gaps = 20/221 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            LH  +G   E+  +  I     I +            DK  +++ +   GVPV P    
Sbjct: 76  ALHPGYGFLSENAELAEICAERGIKFVGPSADVIRRMGDKTEARRSMIKAGVPVTPGTEG 135

Query: 114 N----RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGD 164
           N       +     I  P ++K   GG   GI        +           + ++   +
Sbjct: 136 NVKDLAEALREAERIGYPVMLKATSGGGGRGIRRCNSQAELESAYPRVISEATKAFGSAE 195

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDI 223
             L +  V+   +   V+ D     +             ++  +     + P  ++  + 
Sbjct: 196 VFLEKCIVEPKHIEAQVLAD-----SFGNTVHLFERDCSIQRRNQKLIEIAPSPQLTPEQ 250

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              +  LA  A +A+G       +FL      +V+++E+N 
Sbjct: 251 RAYIGDLAVRAAKAVGYENAGTVEFLL--ADGEVYFMEMNT 289


>gi|226227329|ref|YP_002761435.1| acetyl-CoA carboxylase biotin carboxylase [Gemmatimonas aurantiaca
           T-27]
 gi|226090520|dbj|BAH38965.1| acetyl-CoA carboxylase biotin carboxylase [Gemmatimonas aurantiaca
           T-27]
          Length = 452

 Score = 73.2 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 33/220 (15%), Positives = 72/220 (32%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+           I +            DK  +++ +   GVP+ P    
Sbjct: 77  AIHPGYGFLAENAEFAETCRASGITFIGPTPDQIRTMGDKASARRAMQDVGVPIVPGSPG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS----IPLDLLQSSSWNHGDQ 165
            +      ++    I  P +IK   GG   G+ V +          L   ++ S      
Sbjct: 137 PVEDPEEALEFARTIGFPVIIKAAAGGGGKGMRVARDPDDFLRSFQLARSEALSAFGNGD 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E++++    +   ++GD   +V  +            K             +  ++ 
Sbjct: 197 VYVEKFLERPRHVEFQILGDTHGNVMHLGERDCSVQRRHQK----LIEEAPCPVMTPELR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +   A    +AI   G    + L D      +++E+N 
Sbjct: 253 ERMGEAAVRGAKAINYVGAGTIEMLLDE-DGSFYFMEMNT 291


>gi|93355848|gb|ABF09937.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Cupriavidus
           metallidurans CH34]
          Length = 477

 Score = 73.2 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 36/222 (16%), Positives = 80/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H  +G   E+      +E     +         L  DK+ +KQ +   GVP  P    
Sbjct: 99  AIHPGYGFLSENADFAERVEKSGFVFIGPTSENIRLMGDKVSAKQAMIKSGVPCVPGSDG 158

Query: 113 ----VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
                 +  + +   +  P +IK   GG   G+ V+  + ++   +     ++       
Sbjct: 159 ALPDDPKEILATARRVGYPVIIKAAGGGGGRGMRVVHTEAALLNAVNMTREEAGRAFGNP 218

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
           ++ +E++++    +   ++ D       +            K          PA  IP  
Sbjct: 219 EVYMEKFLENPRHVEIQILADQHRQAIWLGERDCSMQRRHQK-----VIEEAPAPHIPRR 273

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + + +      A + IG RG    +FL+   + + +++E+N 
Sbjct: 274 LIERIGDRCAEACKKIGYRGAGTFEFLY--ENNEFYFIEMNT 313


>gi|22537201|ref|NP_688052.1| carbamoyl phosphate synthase large subunit [Streptococcus
           agalactiae 2603V/R]
 gi|76798077|ref|ZP_00780333.1| carbamoyl-phosphate synthase, large subunit [Streptococcus
           agalactiae 18RS21]
 gi|60389784|sp|Q8DZQ7|CARB_STRA5 RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|22534066|gb|AAM99924.1|AE014239_16 carbamoyl-phosphate synthase, large subunit [Streptococcus
           agalactiae 2603V/R]
 gi|76586582|gb|EAO63084.1| carbamoyl-phosphate synthase, large subunit [Streptococcus
           agalactiae 18RS21]
          Length = 1060

 Score = 73.2 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 28/217 (12%), Positives = 78/217 (35%), Gaps = 20/217 (9%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           L    +    + +     + ++ + +  + +  +P  P          +++   I  P +
Sbjct: 646 LNKAGVKILGTQLEDLDRAENRKQFEATLQALNIPQPPGFTATTEEEAVNAAQKIGYPVL 705

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS--- 186
           ++P        + +++ ++ +   +  +   +    +LI+ Y+ G E     + D     
Sbjct: 706 VRPSYVLGGRAMKIVENEEDLRHYMTTAVKASPDHPVLIDAYLIGKECEVDAISDGQNIL 765

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISR 245
           +      + +S  +S        +S  V P + +   I + +          + C G+  
Sbjct: 766 IPGIMEHIERSGVHS-------GDSMAVYPPQTLSETIIETIVDYTKRLAIGLNCIGMMN 818

Query: 246 SDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277
             F+     +KV+ +E+N       P ++ V+  P  
Sbjct: 819 IQFVI--KDQKVYVIEVNPRASRTLPFLSKVTHIPMA 853



 Score = 73.2 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 58/315 (18%), Positives = 119/315 (37%), Gaps = 39/315 (12%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQID-------VDRSVGL--------------V 45
           G ++E + S   G     +L++ G++V  ++        D+ +                +
Sbjct: 21  GQAAEFDYS---GTQACLSLKEEGYQVVLVNSNPATIMTDKDIADKVYIEPITLEFVTRI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           L   +PD     L G  G +  +      ILE L +    + + A   + D+   KQ++ 
Sbjct: 78  LRKERPDALLPTLGGQTGLNMAMALSKNGILEELNVELLGTKLSAIDKAEDRDLFKQLME 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
               P+  S +VN     +     I  P +++P       G  +    + +     +   
Sbjct: 138 ELNQPIPESEIVNSVEEAIQFAEQIGYPLIVRPAFTLGGTGGGMCDNQEQLVDITTKGLK 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   Q LIE+ + G  E+   VM DA+ +   + V   + +   +   + +S    PA+
Sbjct: 198 LSPVTQCLIERSIAGFKEIEYEVMRDAADNA--LVVCNMENFD-PVGIHTGDSIVFAPAQ 254

Query: 219 IPLDIYKE-VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
              D+  + ++  +    +A+   G        DP S K + +E+N  P ++  S     
Sbjct: 255 TLSDVENQLLRDASLDIIRALKIEGGCNVQLALDPNSFKYYVIEVN--PRVSRSS--ALA 310

Query: 278 AAYAGYSFRELLLWM 292
           +   GY   +L   +
Sbjct: 311 SKATGYPIAKLAAKI 325


>gi|288922868|ref|ZP_06417032.1| Carbamoyl-phosphate synthase L chain ATP-binding [Frankia sp.
           EUN1f]
 gi|288345794|gb|EFC80159.1| Carbamoyl-phosphate synthase L chain ATP-binding [Frankia sp.
           EUN1f]
          Length = 735

 Score = 73.2 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 38/216 (17%), Positives = 79/216 (36%), Gaps = 14/216 (6%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
           +G   E+           + +         L  +K+ +K+ V++ GVPV P  +    T 
Sbjct: 82  YGFLAENPAFAQACAAAGVVFVGPSPEVVDLMGNKIAAKRTVAAAGVPVVPGRIEPGMTD 141

Query: 119 D----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGDQLLIEQ 170
           D    +   I  P ++KP  GG   G+ +++    +P  L     ++++    D L +E+
Sbjct: 142 DDLVSASAEIGYPVLVKPAAGGGGKGMRLVRDRADLPEALRSARREAAASFGDDTLFVER 201

Query: 171 YVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           +VD    +   ++ D   +V  +   +        K             +       +  
Sbjct: 202 FVDIPRHIEVQILADTHGNVIHLGERECSLQRRHQKI----VEEAPSVLLDAATRARIGG 257

Query: 230 LAFLAHQAIGCRGISRSDFLF-DPLSRKVFWLEINV 264
            A     A+G  G    +F+       + F++E+N 
Sbjct: 258 AAVDVAAAVGYVGAGTVEFVVGTERPDEFFFMEMNT 293


>gi|224823860|ref|ZP_03696969.1| carbamoyl-phosphate synthase, large subunit [Lutiella nitroferrum
           2002]
 gi|224604315|gb|EEG10489.1| carbamoyl-phosphate synthase, large subunit [Lutiella nitroferrum
           2002]
          Length = 1070

 Score = 73.2 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 41/262 (15%), Positives = 95/262 (36%), Gaps = 27/262 (10%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH-----GNFGEDG---- 66
           AL ++GF+   +         D D S  L    L  +    + H     G   + G    
Sbjct: 582 ALRESGFETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEICHVEKPFGVIVQYGGQTP 641

Query: 67  -LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHL 123
             +   LE   +P   +       + D+ R ++++   G+   P+         M     
Sbjct: 642 LKLARALEANGVPIIGTTPDMIDCAEDRERFQKMLQELGLKQPPNRTARTPADAMRLAEE 701

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVM 182
           I  P V++P        + ++ +   +   + ++   ++   +L+++++ D IE+    +
Sbjct: 702 IGYPLVVRPSYVLGGRAMEIVHEPADLERYMREAVKVSNDSPVLLDRFLNDAIEVDVDAV 761

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D  L V    +   +       +S  ++  + P  +   +  E++R      +A+   G
Sbjct: 762 SDGELVVIGGIMQHVEQAGV---HSGDSACSLPPYSLFPAVQDEIRRQTVAMAKALNVVG 818

Query: 243 ISRSDFLFDPLSRKVFWLEINV 264
           +    F        ++ LE+N 
Sbjct: 819 LMNVQFAI--QGDTIYVLEVNP 838



 Score = 64.8 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 51/278 (18%), Positives = 105/278 (37%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +         D D            + V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYKVILVNSNPATIMTDPDMADVTYIEPINWQVVEKIIAKERPDAILP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      +LE  ++    +   A   + D+ R K+ ++  G+    S +
Sbjct: 89  TMGGQTALNCALDLARNGVLEKYKVELIGATEDAIDKAEDRGRFKEAMAKIGLSCPLSFV 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +    ++ +Q  +  P +I+P       G  +    +       +    +   +LLIEQ
Sbjct: 149 CHTMEESLAAQAKVGFPTLIRPSFTMGGSGGGIAYNKEEFLAICERGFEASPTHELLIEQ 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            V G  E    V+ D + +   I   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SVLGWKEYEMEVVRDRNDNCIIICSIEN----FDPMGVHTGDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RNASLAVLREIGVDTGGSNVQFATNPDTGEMIVIEMNP 302


>gi|56419330|ref|YP_146648.1| carbamoyl phosphate synthase large subunit [Geobacillus
           kaustophilus HTA426]
 gi|56379172|dbj|BAD75080.1| carbamoyl-phosphate synthase(arginine-specific) large chain
           [Geobacillus kaustophilus HTA426]
          Length = 1042

 Score = 73.2 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 59/287 (20%), Positives = 109/287 (37%), Gaps = 35/287 (12%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI----------DVD-----------RSVGLV 45
           G ++E + S   G     AL++ G++V  +          DV             +V  +
Sbjct: 21  GQAAEFDYS---GTQACIALKEEGYRVILVNNNPATIMTDDVHADAVYFEPLTVEAVEAI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +A  +PD       G  G +   Q     +LE   +    + I A     D+   + ++ 
Sbjct: 78  IAKERPDGLLATFGGQTGLNLAFQLHEAGVLEKYGVRLLGTPIEAIKRGEDREAFRALMH 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G PV  S +V      +     I  P +I+P       G  + +  +     + +  +
Sbjct: 138 ELGEPVPESEIVTSVEEAVAFAEQIGFPIIIRPAYTLGGTGGGIAENMEQFLALVEKGLN 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   Q LIE+ V G  E+   VM D     T I V   +     +   + +S  V P++
Sbjct: 198 ESPIHQCLIERSVAGFKEIEYEVMRDQ--SNTCITVCNMENVD-PVGIHTGDSIVVAPSQ 254

Query: 219 -IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +  + Y+ ++  A     A+G  G     F  DP S++ + +E+N 
Sbjct: 255 TLTDEEYQMLRSSAVKIISALGIIGGCNIQFALDPNSKQYYLIEVNP 301



 Score = 70.5 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 41/228 (17%), Positives = 87/228 (38%), Gaps = 22/228 (9%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL--ISPPYV 129
           LE   +P             D+ R  Q++    +P  P ++ N     +     I  P +
Sbjct: 650 LEEAGVPLLGVTYDMIDQLEDRDRFYQLLEELDIPHVPGLVANNAEELAAKAAEIGCPVL 709

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA---S 186
           ++P       G+ ++  +  +   L++     +   +LI+ Y+DG E    ++ D     
Sbjct: 710 LRPSYVIGGRGMFIVHSEAQL-AALIEQGELTY--PILIDAYLDGKEAEADIVTDGTDIV 766

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISR 245
           L V    V K+  +S        +S   LPA+ +  +   ++   A    + +G +GI  
Sbjct: 767 LPVIIEHVEKAGIHS-------GDSYAWLPAQTLTGEEKAKIIDYAGRIAKKLGFKGIMN 819

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
             ++       V+ LE+N +   T     P ++   G    ++   ++
Sbjct: 820 IQYVI--ADGNVYVLEVNPRASRT----VPIVSKTTGVPLAQIATKLL 861


>gi|304392629|ref|ZP_07374569.1| pyruvate carboxylase [Ahrensia sp. R2A130]
 gi|303295259|gb|EFL89619.1| pyruvate carboxylase [Ahrensia sp. R2A130]
          Length = 1158

 Score = 73.2 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 31/205 (15%), Positives = 69/205 (33%), Gaps = 20/205 (9%)

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL---------VNRFTMDSQHLIS 125
             + +            +K+ ++ +    GVPV P+             +        + 
Sbjct: 106 AGLTFIGPKADTMRRLGNKVAARNLAVEAGVPVVPASPPLPDAGSDGYAKTIRKMADEVG 165

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQLLIEQYVD-GIELTCG 180
            P ++K   GG   G+  I+ +  +  ++L++          D++ +E+ V+    +   
Sbjct: 166 YPIMLKASWGGGGRGMRTIRSEDELENEVLEARREAAAAFGKDEVYLERLVERARHVEVQ 225

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIG 239
           V+GD                   ++  +       PA  +  +   E+   A        
Sbjct: 226 VLGDGQGTAV-----HLFERDCSVQRRNQKVVERAPAPYLSQEKRDELCGYALQIANETN 280

Query: 240 CRGISRSDFLFDPLSRKVFWLEINV 264
             G    +FL D  S + F++E+N 
Sbjct: 281 YLGAGTIEFLMDIDSEEFFFIEVNP 305


>gi|284990282|ref|YP_003408836.1| pyruvate carboxylase [Geodermatophilus obscurus DSM 43160]
 gi|284063527|gb|ADB74465.1| pyruvate carboxylase [Geodermatophilus obscurus DSM 43160]
          Length = 1124

 Score = 73.2 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 40/216 (18%), Positives = 75/216 (34%), Gaps = 17/216 (7%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
           +G   E+  + A  E   I +         L+ +K R+       G+PV  S       +
Sbjct: 83  YGFLSENPELAAACEREGITFVGPPASVLELTGNKARAIAAAREAGLPVLAS-TAPSDDL 141

Query: 119 D----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGDQLLIEQ 170
           D    S   +  P  +K + GG   G+  ++    +       + ++ S      + +EQ
Sbjct: 142 DTVLASTADMPFPVFVKAVAGGGGRGMRRVEDPAELAGAVQAAMREAESAFGDATVFVEQ 201

Query: 171 Y-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQ 228
             V+   +   V+ D   +V              ++        + PA  +   + + + 
Sbjct: 202 AVVEPRHIEVQVLADGQGNVV-----HLFERDCSVQRRHQKVIELAPAPNLDPHLRERIC 256

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             A    +AIG       +FL D   R VF  E+N 
Sbjct: 257 ADAVAFARAIGYVNAGTVEFLLDREGRHVFI-EMNP 291


>gi|184201922|ref|YP_001856129.1| acyl-CoA carboxylase alpha chain [Kocuria rhizophila DC2201]
 gi|183582152|dbj|BAG30623.1| acyl-CoA carboxylase alpha chain [Kocuria rhizophila DC2201]
          Length = 689

 Score = 73.2 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 40/196 (20%), Positives = 71/196 (36%), Gaps = 14/196 (7%)

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSI----LVNRFTMDSQHLISPPYVIKPLK 134
           +      A  +  DK+ SK  V+  GVP+   +    L +   + +   +  P +IKP  
Sbjct: 102 FIGPRECALEIMGDKIASKLQVAEHGVPLVQGVSEPGLTDEQLVAAAADMPFPVLIKPSA 161

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQLLIEQYV-DGIELTCGVMGDASLDV 189
           GG   G+ V+++ + +   L  +          D LLIEQ V     +   V+ D    V
Sbjct: 162 GGGGKGMHVVERYEDLAEALPAARRVAKQSFGDDTLLIEQLVATPRHIEVQVLADTHGHV 221

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
             +   +        K           A +       +   A  A +A+   G    +FL
Sbjct: 222 IHLGERECSLQRRHQK----VIEEAPSALLDAATRARIGEAAVAAAKAVDYVGAGTVEFL 277

Query: 250 F-DPLSRKVFWLEINV 264
             D      +++E+N 
Sbjct: 278 VSDREPDTFYFMEMNT 293


>gi|156603544|ref|XP_001618853.1| hypothetical protein NEMVEDRAFT_v1g224753 [Nematostella vectensis]
 gi|156200653|gb|EDO26753.1| predicted protein [Nematostella vectensis]
          Length = 471

 Score = 73.2 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 44/256 (17%), Positives = 89/256 (34%), Gaps = 36/256 (14%)

Query: 30  GFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
           GF+V  +    ++  ++A  +PD     +     E           +       ++ SA 
Sbjct: 127 GFEVINMLDGAALDSIIAKHQPDFIVPEIEAIRTE--------RFYDYEKQGITVVPSAK 178

Query: 90  SMD-----KMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGII 142
           + +     K          G+           +    +   +  P V+KPL   S  G  
Sbjct: 179 AANFTMNRKAIRDLAAKELGLRTANYRYATSAKELQKAVAEVGKPCVVKPLMSSSGKGQS 238

Query: 143 VIKKDQSIPLDLLQSSSWNHGD--QLLIEQYVDGIELTCGVM---GDASLDVTEIAV--P 195
            IK D+ I      +   + GD  ++++E +V+       ++    +  L     A    
Sbjct: 239 TIKTDEDISKAWNYAVEGSRGDVVEVIVEAFVN-FHSEITLLTVTQNNDLPTLFCAPIGH 297

Query: 196 KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255
           + +   Y+  +         PA+I      E Q +A    +A+G  G+   +F       
Sbjct: 298 RQERGDYQESW--------QPARISDTALFEAQDMAEKVTEALGGAGLFGVEFFLTDEG- 348

Query: 256 KVFWLEINVQP---GM 268
            V++ E++ +P   GM
Sbjct: 349 -VYFSELSPRPHDTGM 363


>gi|126661942|ref|ZP_01732941.1| acetyl-CoA carboxylase, biotin carboxylase [Flavobacteria bacterium
           BAL38]
 gi|126625321|gb|EAZ96010.1| acetyl-CoA carboxylase, biotin carboxylase [Flavobacteria bacterium
           BAL38]
          Length = 482

 Score = 73.2 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 40/225 (17%), Positives = 82/225 (36%), Gaps = 17/225 (7%)

Query: 52  DLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
           DL  + +H  +G   E+       E   I +      A  +   K+ +K+ V    +P+ 
Sbjct: 74  DLGVDAVHPGYGFLSENSAFAEACEKNNIIFIGPKSKAIEMMGSKLAAKEAVMKYDIPMV 133

Query: 109 PSILVNRFTMDSQHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSW 160
           P +      ++        +  P +IK   GG   G+ V+++++         + +++S 
Sbjct: 134 PGVDHAIIDVEEAKKTAKAVGFPILIKASAGGGGKGMRVVEREEDFESQMNRAISEATSA 193

Query: 161 NHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI 219
                + IE+YV     +   +M D+  +V  +   +        K             +
Sbjct: 194 FGDGSVFIEKYVTKPRHIEIQIMADSHGNVLYVFERECSIQRRHQK----VVEEAPSCIL 249

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +  KE+   A    +A    G    +FL D      ++LE+N 
Sbjct: 250 TPEKRKEMGEAAVKVARACDYLGAGTVEFLMDA-DHNFYFLEMNT 293


>gi|86360235|ref|YP_472124.1| acetyl-CoA carboxylase, biotin carboxylase protein [Rhizobium etli
           CFN 42]
 gi|86284337|gb|ABC93397.1| acetyl-CoA carboxylase, biotin carboxylase protein [Rhizobium etli
           CFN 42]
          Length = 464

 Score = 73.2 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 82/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--I 111
            +H  +G   E+ +    +E   + +      + A   DK+ +K+ + + GVP  P    
Sbjct: 90  AIHPGYGFLSENAIFADTVEKAGLVFIGPTASSIATMGDKIAAKRAMMAAGVPCVPGPDT 149

Query: 112 LVNRFTMDSQHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG----D 164
            +       + L   I  P +IK   GG   G+ V+ K   +   +  +           
Sbjct: 150 ALPDDPASVERLALEIGYPVIIKASGGGGGRGMRVVPKADQLHEAIALTREEARKAFGSP 209

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            L +E+++     +   V+ D   +   +           ++          PA  I  D
Sbjct: 210 SLYMEKFLQHPRHIEIQVLCDDYGNAVWL-----GHRDCSMQRRHQKVVEEAPAPGIAPD 264

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           I + V      A + IG RG+   +FL+   +   +++E+N 
Sbjct: 265 IIRPVGMACVEACRQIGYRGVGTFEFLY--ENGAFYFIEMNT 304


>gi|326498821|dbj|BAK02396.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 726

 Score = 73.2 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 37/223 (16%), Positives = 79/223 (35%), Gaps = 23/223 (10%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      L    + +      +     DK+ SK +     + + P    
Sbjct: 132 AVHPGYGFLSENTKFAKKLADHNVEFIGPSSKSIEAMGDKIHSKIIARKANISMIPGY-- 189

Query: 114 NRFTMDSQHL------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNH 162
           +    D +        I  P +IK   GG   G+ V   D+    +        +SS+  
Sbjct: 190 DGEVKDEEECVRVSNDIGYPVMIKASAGGGGKGMRVAWNDKEARENFRLSKGEAASSFG- 248

Query: 163 GDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL 221
            D++L+E+++D    +   ++GD   ++  +   +        K             +  
Sbjct: 249 DDRMLVEKFIDNPRHIEFQILGDKHGNIVYLNERECSIQRRNQK----VIEEAPSVFLDP 304

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +  +++   A     A+G       +F+ D   R  ++LE+N 
Sbjct: 305 ETRRKMGEEAVQLAHAVGYYSAGTVEFMVDSK-RNFYFLEMNT 346


>gi|75675945|ref|YP_318366.1| acetyl-CoA carboxylase biotin carboxylase subunit [Nitrobacter
           winogradskyi Nb-255]
 gi|74420815|gb|ABA05014.1| acetyl-CoA carboxylase carboxyltransferase subunit alpha
           [Nitrobacter winogradskyi Nb-255]
          Length = 451

 Score = 73.2 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 80/220 (36%), Gaps = 18/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---- 109
            +H  +G   E+     IL    + +         L  DK+ +K+     G+PV P    
Sbjct: 77  AVHPGYGFLSENARFAEILADHRLHFIGPKAEHIRLMGDKIEAKKTAKRLGIPVVPGSDG 136

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
            I  +   M     I  P ++K   GG   G+ ++K    + + +     ++ +      
Sbjct: 137 GIGPDDNAMAIAKAIGFPVLVKAAAGGGGRGMKIVKTPDDLMMAISAAGNEARAAFGDAS 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+Y+     +   V+GD       +        S + ++  +      PA +     
Sbjct: 197 VYLEKYLQKPRHIEIQVLGDGRGGAIHLGERD---CSLQRRHQKVWEEGPSPA-LTAAAR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            ++      A   I   G+   +FL+     + +++E+N 
Sbjct: 253 NKIGETVAKAMSEIKYLGVGTVEFLY--EDGRFYFIEMNT 290


>gi|327398982|ref|YP_004339851.1| acetyl-CoA carboxylase, biotin carboxylase [Hippea maritima DSM
           10411]
 gi|327181611|gb|AEA33792.1| acetyl-CoA carboxylase, biotin carboxylase [Hippea maritima DSM
           10411]
          Length = 517

 Score = 73.2 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 75/220 (34%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+       E   I +      +  +  DK RS+Q +   GVPV P    
Sbjct: 81  AVHPGYGFLAENSEFVKACEAAGITFIGPNTESMYILGDKTRSRQKMIEAGVPVVPGTKD 140

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSWNHGDQ 165
            +      +     +  P + K   GG   G+ +I   +       L   ++ S    D+
Sbjct: 141 PVESLEEALKVAEEVGYPIMFKASAGGGGKGMRLINSAEEFKEVYDLAKGEALSAFGDDR 200

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+ +     +   +  D   +       +        K    + +      I  ++ 
Sbjct: 201 MYIEKAIVKPRHVEIQIAVDKHGNAVHFYERECSIQRRHQKVIEESPSMA----INDEVR 256

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            ++   A  A +A     +   +FL D      ++LE+N 
Sbjct: 257 HKMGEAAIKAVKAANYDSVGTVEFLVDK-DMNFYFLEVNT 295


>gi|312135338|ref|YP_004002676.1| carbamoyl-phosphate synthase, large subunit [Caldicellulosiruptor
           owensensis OL]
 gi|311775389|gb|ADQ04876.1| carbamoyl-phosphate synthase, large subunit [Caldicellulosiruptor
           owensensis OL]
          Length = 1077

 Score = 73.2 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 27/232 (11%), Positives = 81/232 (34%), Gaps = 18/232 (7%)

Query: 68  VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTMDSQHLIS 125
           + + L    +    + + +   + D+ +   ++ +  +P  P          +     I 
Sbjct: 646 MASYLAKNGVKILGTSMESIDTAEDRDKFLNLLKNLNIPYPPGGAAYSLEDAVKVAEKIG 705

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            P +++P        + ++     +   +  +   +    +LI++Y+ G E     + D 
Sbjct: 706 YPVLVRPSYVLGGRAMEIVFSRDELEKYIKAAIEISIKHPILIDKYILGKEAEVDGISDG 765

Query: 186 S---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCR 241
               +      + ++  +S        +S  V P   +   + +++        +A+   
Sbjct: 766 EDVLIPGIMEHIERAGVHS-------GDSMAVFPPHTLTEKVKEKIVDYTIKLARALKVV 818

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           G+    F+ D     V+ +E+N +   T     P ++   G    ++   ++
Sbjct: 819 GLFNIQFVIDKDEN-VYVIEVNPRASRT----VPILSKVTGIPMIKIATKLI 865



 Score = 65.1 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 49/288 (17%), Positives = 108/288 (37%), Gaps = 37/288 (12%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFN---------- 56
           G ++E + S   G     AL++ G +V  ++ + +  +    +  D  +           
Sbjct: 21  GQAAEFDYS---GTQACRALKEEGIEVVLVNSNPATIMTDTEI-ADRVYIEPISVDYIEE 76

Query: 57  ---------VLHGNFGEDG-------LVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
                    +L G  G+             ILE   +    + +     + D+   K+ +
Sbjct: 77  IIKKERPQGLLAGLGGQTALNMAFELAEAGILEKYGVFLLGTSLETIKKAEDRELFKKTM 136

Query: 101 SSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS 158
              G PV  SI+ +  +  +D    +  P +++P       G  +   ++ +     +  
Sbjct: 137 IEIGEPVPKSIIAHSVQEAIDFAREVGYPVIVRPAYTLGGTGGGIAYNEEELKYIASKGL 196

Query: 159 SWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
             +   Q+LIEQ V G  E+   VM D++ +   I V   +     +   + +S  V P+
Sbjct: 197 KLSLIHQVLIEQSVLGWKEIEYEVMRDSNDN--CITVCNMENID-PVGIHTGDSIVVAPS 253

Query: 218 K-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +    Y+ ++  +    +++   G     F  +P S +   +E+N 
Sbjct: 254 QTLSDKEYQILRSASLNIIRSLKIEGGCNVQFALNPNSMEYVVIEVNP 301


>gi|15667251|gb|AAL02364.1| propionyl CoA-carboxylase alpha-subunit [Mus musculus]
          Length = 724

 Score = 73.2 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 74/221 (33%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      L   ++ +      A     DK+ SK +     V   P    
Sbjct: 134 AVHPGYGFLSENKEFAKRLAAEDVTFIGPDTHAIQAMGDKIESKLLAKRAKVNTIPGFDG 193

Query: 112 LVNRFTMDS--QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGD 164
           +V            I  P +IK   GG   G+ +   D+             +SS+   D
Sbjct: 194 VVKDADEAVRIAREIGYPVMIKASAGGGGKGMRIAWDDEETRDGFRFSSQEAASSFG-DD 252

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           +LLIE+++D    +   V+GD   +   +   +        K             +  + 
Sbjct: 253 RLLIEKFIDNPRHIEIQVLGDKHGNALWLNERECSIQRRNQK----VVEEAPSIFLDPET 308

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +   A    +A+        +FL D      ++LE+N 
Sbjct: 309 RQAMGEQAVALAKAVKYSSAGTVEFLVDSQKN-FYFLEMNT 348


>gi|332526555|ref|ZP_08402667.1| putative biotin carboxylase protein [Rubrivivax benzoatilyticus
           JA2]
 gi|332110823|gb|EGJ11000.1| putative biotin carboxylase protein [Rubrivivax benzoatilyticus
           JA2]
          Length = 449

 Score = 73.2 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 78/221 (35%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +      A  +  DK+ +KQ +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAERVEKSGFVFIGPTPEAIRMMGDKVSAKQAMLRAGVPCVPGTDG 136

Query: 112 ---LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGD 164
                 +  +     I  P +IK   GG   G+ V+  + ++   +     ++ +     
Sbjct: 137 ALPEDPKEIIRQARAIGYPVIIKAAGGGGGRGMRVVHTEAALLNAVQTTRTEAGAAFGNP 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            + +E++++    +   V+ D   +   +            K             IP  I
Sbjct: 197 AVYMEKFLENPRHVEIQVLADNYRNAVWLGERDCSMQRRHQK----VIEEAPAPNIPRRI 252

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              V      A + IG RG    +FL+   + + F++E+N 
Sbjct: 253 VDRVGERCAAACKKIGYRGAGTFEFLY--ENGEFFFIEMNT 291


>gi|300088016|ref|YP_003758538.1| carbamoyl-phosphate synthase large subunit [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
 gi|299527749|gb|ADJ26217.1| carbamoyl-phosphate synthase, large subunit [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
          Length = 1073

 Score = 73.2 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 34/194 (17%), Positives = 67/194 (34%), Gaps = 9/194 (4%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQHLISPPYVIKPL 133
             P   S      L+ D+ R +  +S   +P  P   V      +    LI  P V++P 
Sbjct: 652 GNPIIGSSSDTIDLAEDRKRFEAFLSELDIPQAPGAGVTTLDEGLKIADLIGYPVVVRPS 711

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
                  + ++     +   +  + +   G  +LI++Y+ G E+    + D       + 
Sbjct: 712 YVLGGQAMEIVNDAGELVRFMKNAMALQTGHPVLIDKYLIGKEVEVDAIADGE----RVL 767

Query: 194 VPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
           +P    +       S +S  V P   +  +    +          +  RG+    F+   
Sbjct: 768 IPGIMEHIERAGVHSGDSMAVYPGLNLSREETDTIIDYTTRIGLKLDIRGLMNIQFVITR 827

Query: 253 LSR--KVFWLEINV 264
                KV+ LE+N 
Sbjct: 828 EEGQSKVYILEVNP 841



 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 46/247 (18%), Positives = 91/247 (36%), Gaps = 11/247 (4%)

Query: 27  EDAGFKVSQIDV--DRSVGLVLAHLKPDLAFNVLHGNFGEDGLV----QAILELLEIPYT 80
           ++    V  I+     +V  ++   +PD     L G  G +  V      +LE   +   
Sbjct: 54  DEEIADVVYIEPLTVEAVTRIIERERPDGLLPTLGGQTGLNLAVDLDNAGVLEKYNVKVL 113

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSS 138
            + I     + D+   KQ++ S    +CPS  V+      D    +  P +I+P      
Sbjct: 114 GTSIDTIRKAEDRELFKQLLLSIDEHICPSHTVDSLEKARDVAFELGLPLIIRPAYTLGG 173

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKS 197
            G  +               + +   Q+L+E+ V G  E+   VM DA+ +   I V   
Sbjct: 174 TGGGIATNMDEFDDIAASGIAASPIRQILVEKSVAGWKEIEYEVMRDAADN--CITVCNM 231

Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
           + +     ++  +        +    Y+ ++  +    +A+G  G     +  DP S   
Sbjct: 232 ENFDPVGVHTGDSIVIAPSQTLTNKEYQMLRTASINIIRALGIEGGCNIQYALDPESATY 291

Query: 258 FWLEINV 264
           + +E+N 
Sbjct: 292 YVIEVNP 298


>gi|198275723|ref|ZP_03208254.1| hypothetical protein BACPLE_01898 [Bacteroides plebeius DSM 17135]
 gi|198271352|gb|EDY95622.1| hypothetical protein BACPLE_01898 [Bacteroides plebeius DSM 17135]
          Length = 503

 Score = 73.2 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 80/220 (36%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+           I +            DK+ +++ + + GVPV P    
Sbjct: 77  AIHPGYGFLSENSEFARRCRQEGIIFIGPDPETMDAMGDKISARKHMIAAGVPVVPGTEQ 136

Query: 114 N----RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
                    +  + I  P ++K   GG   G+ +I  +  +      + S +      D 
Sbjct: 137 PLQSVEEAKEICNKIGYPVMLKASMGGGGKGMRLIHSEDEVEEAYNTARSESMSSFGDDT 196

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E++V+    +   ++GD   +   +   +        K             +  ++ 
Sbjct: 197 VYLEKFVEEPHHIEFQILGDNFGNAVHLFERECSIQRRNQKI----VEETPSPFVTPELR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +++   A  A +A+  +G    +FL D   R  ++LE+N 
Sbjct: 253 QKMGEAAVAAAKAVHYKGAGTIEFLVDKH-RNFYFLEMNT 291


>gi|169628166|ref|YP_001701815.1| acetyl-/propionyl-CoA carboxylase alpha subunit AccA2
           [Mycobacterium abscessus ATCC 19977]
 gi|169240133|emb|CAM61161.1| Probable acetyl-/propionyl-CoA carboxylase alpha subunit AccA2
           [Mycobacterium abscessus]
          Length = 692

 Score = 73.2 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 39/219 (17%), Positives = 83/219 (37%), Gaps = 24/219 (10%)

Query: 58  LHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
           +H  +G   E+      +    + +    + A      K+ SK+++ + GVPV     + 
Sbjct: 88  IHPGYGFLSENADFARAVADAGLTWIGPPVAAIESMGSKIESKKLMDAAGVPV-----LG 142

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS-----SSWNHGDQLLIE 169
           +   ++      P ++K   GG   G+ ++ +   +P ++  +     S++     +  E
Sbjct: 143 QLDPETVTTAQLPVLVKASAGGGGRGMRIVSELDKLPAEIAAAQREAQSAFG-DPTVFCE 201

Query: 170 QYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI---YK 225
           +Y+  G  +   VM DA   V  +   +        K          P+ +   I    +
Sbjct: 202 RYLGTGRHIEVQVMADAHGTVWAVGERECSIQRRHQK-----VIEEAPSPLVTRIDGMRE 256

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + + +  A  AIG  G    +F       + F+LE+N 
Sbjct: 257 RLFQASRTAAAAIGYVGAGTMEF-LATEDGEFFFLEMNT 294


>gi|168701256|ref|ZP_02733533.1| pyruvate carboxylase [Gemmata obscuriglobus UQM 2246]
          Length = 1155

 Score = 73.2 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 35/223 (15%), Positives = 82/223 (36%), Gaps = 22/223 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV-----C 108
            +H  +G   E+           I +            DK+ ++ +     VPV      
Sbjct: 85  AIHPGYGFLSENAQFARACAAAGITFVGPRPEVLEQLGDKVTARGIAKKAQVPVLSGGET 144

Query: 109 PSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS-----SSWNHG 163
           P  L++     ++  +  P ++K   GG   G+ V+     +   +  +     +++   
Sbjct: 145 PLALIDEAHALAEK-LGYPVIVKASMGGGGRGMRVVHTADKLQEAVESAQREAGAAFGIA 203

Query: 164 DQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPL 221
           D + +E++V     +   ++GD    +              ++        + PA  +P 
Sbjct: 204 D-VFLEKFVQRAKHIEVQLLGDRHGGLV-----HLFERDCSVQRRHQKVVELAPAPNLPA 257

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           D+   +   A    +A G    S  +FL+D  +++ +++E+N 
Sbjct: 258 DVRHGILDAALAVGRACGIDNASTVEFLYDTDAQRFYFIEVNP 300


>gi|119471965|ref|ZP_01614250.1| urea carboxylase (alpha subunit) [Alteromonadales bacterium TW-7]
 gi|119445223|gb|EAW26514.1| urea carboxylase (alpha subunit) [Alteromonadales bacterium TW-7]
          Length = 663

 Score = 73.2 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 43/237 (18%), Positives = 81/237 (34%), Gaps = 18/237 (7%)

Query: 38  VDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSK 97
           V   +  V  +   D      +G   E+       E   I +      +      K R+K
Sbjct: 66  VTDKILQVAKNSGADCIHPG-YGFLSENSEFAKACEANNIAFIGPLASSIEAMGSKTRAK 124

Query: 98  QVVSSCGVPVCPSILVNRFT----MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153
           ++++   VP+ P    +             I  P +IK   GG   G+ V+++ +     
Sbjct: 125 EIMAKANVPLVPGYYGDNQDPAFLQSEAEKIGYPVLIKAAFGGGGKGMRVVEQAKDFMSA 184

Query: 154 LL----QSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS 208
           L     ++ +    D +L+E+YV+    +   V  D   +   +           L+   
Sbjct: 185 LEGAQREAIAGFGNDLVLLERYVNQPRHVEVQVFADNHGNCVYL-----GDRDCSLQRRH 239

Query: 209 LNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
                  PA  +   + KE+   A     AI   G    +FL      + F++E+N 
Sbjct: 240 QKVIEEAPAPGLSDTLRKEMGEAAVRCALAINYHGAGTVEFLL--CGDEFFFMEMNT 294


>gi|57526509|ref|NP_001002746.1| propionyl-CoA carboxylase alpha chain, mitochondrial [Danio rerio]
 gi|49901428|gb|AAH76408.1| Propionyl-Coenzyme A carboxylase, alpha polypeptide [Danio rerio]
 gi|161612218|gb|AAI55773.1| Propionyl-Coenzyme A carboxylase, alpha polypeptide [Danio rerio]
          Length = 709

 Score = 73.2 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 74/221 (33%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      L    + +      A     DK+ SK +  +  V   P    
Sbjct: 119 AVHPGYGFLSENKEFAKRLAAEGVTFIGPDTHAIQAMGDKIESKLIAKAAKVNTIPGFDG 178

Query: 112 LVNRFTMDS--QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGD 164
           +V            I  P +IK   GG   G+ +   D+             +SS+   D
Sbjct: 179 VVKDAEEAVKIAGEIGYPVMIKASAGGGGKGMRIAWNDEETREGFRFSSQEAASSFG-DD 237

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           +LLIE+++D    +   V+ D   +   +   +        K             +  D 
Sbjct: 238 RLLIEKFIDNPRHIEIQVLADKHGNALWLNERECSIQRRNQK----VVEEAPSTFLDPDT 293

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +++   A    +A+        +FL D      ++LE+N 
Sbjct: 294 RRKMGEQAVSLAKAVKYSSAGTVEFLVDSKKN-FYFLEMNT 333


>gi|296188911|ref|XP_002742552.1| PREDICTED: propionyl-CoA carboxylase alpha chain, mitochondrial
           isoform 3 [Callithrix jacchus]
          Length = 681

 Score = 73.2 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 74/220 (33%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      L    + +      A     DK+ SK +     V   P    
Sbjct: 138 AVHPGYGFLSENKEFARCLAAEGVIFIGPDTHAIQAMGDKIESKLLAKKAKVNTIPGFDG 197

Query: 112 LVNRFTMDS--QHLISPPYVIKPLKGGSSLGIIVIKKDQS----IPLDLLQSSSWNHGDQ 165
           +V            I  P +IK   GG   G+ +   D+       L   +++S    D+
Sbjct: 198 VVKDAEEAVRIAREIGYPVMIKASAGGGGKGMRIAWDDEETRDGFRLSSQEAASSFGDDR 257

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           LLIE+++D    +   V+GD   +   +   +        K             +  +  
Sbjct: 258 LLIEKFIDNPRHIEIQVLGDKHGNALWLNERECSIQRRNQK----VVEEAPSIFLDAETR 313

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +   A    +A+        +FL D      ++LE+N 
Sbjct: 314 RAMGEQAVALAKAVKYSSAGTIEFLVDSKKN-FYFLEMNT 352


>gi|285019229|ref|YP_003376940.1| carbamoyl-phosphate synthase, cpsase [Xanthomonas albilineans GPE
           PC73]
 gi|283474447|emb|CBA16948.1| putative carbamoyl-phosphate synthase, cpsase protein [Xanthomonas
           albilineans]
          Length = 423

 Score = 73.2 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 46/203 (22%), Positives = 84/203 (41%), Gaps = 20/203 (9%)

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTMDSQHLISPPYVI 130
           E+LE+P   S ++    + DK   +    S GVP         ++  +     I  P V+
Sbjct: 101 EMLELPTVGSNVV--RTTRDKYLMRLASCSAGVPTPQFGIAATHQEALAIAQRIGYPVVV 158

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ-------LLIEQYVDGIELTC-GVM 182
           KP    +S  + +   D  +       + +    +        LIE+++DG E++   V 
Sbjct: 159 KPTDMSASAFVALAMTDAELLSATDAVTCYRQNARGQDLNAVALIEEFLDGQEVSVETVT 218

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR- 241
            + +  V  IAV     YS  L    + + H++PA +  +  + V  LA  A +A+G   
Sbjct: 219 VNGATQV--IAVTDKSLYSDTL---FIETGHMVPAILDPETVRAVGDLAEAALRAVGYSH 273

Query: 242 GISRSDFLFDPLSRKVFWLEINV 264
           G++ ++        +V   EIN 
Sbjct: 274 GVAHTEIKLTSRGPRVV--EINP 294


>gi|255954463|ref|XP_002567984.1| Pc21g09450 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211589695|emb|CAP95842.1| Pc21g09450 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 800

 Score = 73.2 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 34/222 (15%), Positives = 80/222 (36%), Gaps = 20/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPSI 111
            +H  +G   E+      +    + +      A +   DK  SK+ +      VP+ P  
Sbjct: 114 AIHPGYGYLSENADFANTVRKAGLIFVGPSASAMSTLGDKRSSKEYLRQQAPDVPLIPGF 173

Query: 112 LVNRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD--- 164
             +    D+       I  P ++K   GG   G+ ++++   +  +L ++ S        
Sbjct: 174 SGSSQDEDALKQAAQEIGFPVMLKASAGGGGKGMRIVREAGELKQELARAQSEAQRSFGS 233

Query: 165 -QLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPL 221
              ++E+Y++    +   ++GD+  +V              ++          P   +  
Sbjct: 234 SDCILEKYIESSKHVEIQILGDSHGEVI-----SFFDRDCSVQRRHQKVIEETPCTFLTD 288

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
           +  + +   A    + IG       +F+ D  +   ++LE+N
Sbjct: 289 ETRQNMSNTAVRIAKLIGYENAGTVEFIVDIKTNHFYFLEVN 330


>gi|313113050|ref|ZP_07798687.1| ATP-grasp domain protein [Faecalibacterium cf. prausnitzii KLE1255]
 gi|310624642|gb|EFQ07960.1| ATP-grasp domain protein [Faecalibacterium cf. prausnitzii KLE1255]
          Length = 442

 Score = 73.2 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 34/192 (17%), Positives = 75/192 (39%), Gaps = 20/192 (10%)

Query: 93  KMRSKQVVSSCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150
           K + K+     G+      +V+ +         +  P V+KP  G  +     +  D+ +
Sbjct: 115 KSKMKEYYQKAGIATARYHMVDDYEGCRKFIDEVGYPVVVKPDNGVGASDTHKLSSDEDL 174

Query: 151 PLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLN 210
              L+Q ++ +   + ++E++V     +   + DA+ +    A   S     ++   + N
Sbjct: 175 KKFLVQKTAHHPDVEYIMEEFVRAEVNSYDAIIDANGNPIFEAGNVSPMSIMDIVNDNDN 234

Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR---SDFLFDPLS-------RKVFWL 260
           S + +   +P D     +  A  +    G +  SR    +F     +        ++  L
Sbjct: 235 SIYYIIKDLPEDTRAAGRA-AVKSF---GVK--SRFIHFEFFRMTENQASMGKKGQIVAL 288

Query: 261 EINVQP--GMTP 270
           E+N++P  G TP
Sbjct: 289 EVNMRPCGGFTP 300


>gi|303326749|ref|ZP_07357191.1| putative pyruvate carboxylase [Desulfovibrio sp. 3_1_syn3]
 gi|302862737|gb|EFL85669.1| putative pyruvate carboxylase [Desulfovibrio sp. 3_1_syn3]
          Length = 1233

 Score = 73.2 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 83/221 (37%), Gaps = 20/221 (9%)

Query: 58  LHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---SI 111
           +H  +G   ED       +   I +  +   A  L  +K+++++V    G+PV P     
Sbjct: 90  IHPGWGFASEDTRFPQRCKEAGITFIGATAEAMNLLGNKVQAREVARKLGIPVVPGSDGA 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQLL 167
           +           I  P ++K   GG   GI  I  +  +     ++SS         +L 
Sbjct: 150 VDISTARRLISEIGLPIMLKAEGGGGGRGIFAIHNEAELEDAFFKASSMAQASFGNPRLF 209

Query: 168 IEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP---AKIPLDI 223
           +E+++ G   +   V+ D   +V        D     ++ +      + P     +  ++
Sbjct: 210 VEKFLSGVRHIEIQVIADMYGNVFAF-----DERDCTVQRNHQKLIEITPSPWPGVTREL 264

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + ++  +    +A+G   ++  +FL        + +E+N 
Sbjct: 265 RERLKDYSRRLVRAVGYHSLATVEFLVTA-EGTPYLIEVNT 304


>gi|156972540|ref|YP_001443447.1| acetyl-CoA carboxylase biotin carboxylase subunit [Vibrio harveyi
           ATCC BAA-1116]
 gi|269962460|ref|ZP_06176809.1| acetyl-CoA carboxylase, biotin carboxylase [Vibrio harveyi 1DA3]
 gi|156524134|gb|ABU69220.1| hypothetical protein VIBHAR_00172 [Vibrio harveyi ATCC BAA-1116]
 gi|269832756|gb|EEZ86866.1| acetyl-CoA carboxylase, biotin carboxylase [Vibrio harveyi 1DA3]
          Length = 447

 Score = 73.2 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 39/223 (17%), Positives = 80/223 (35%), Gaps = 21/223 (9%)

Query: 56  NVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111
             +H  +G   E+      +E     +         +  DK+ +   +   GVP  P   
Sbjct: 76  IAIHPGYGFLSENADFAEQVERSGFIFVGPKADTIRMMGDKVSAINAMKKAGVPCVPGSD 135

Query: 112 --LVNRFTMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHG 163
             L N    +  H   I  P +IK   GG   G+ V++ +  +   +     ++ +  + 
Sbjct: 136 GPLDNDEDKNKAHAKRIGYPVIIKASGGGGGRGMRVVRSEAELVQAIAMTRAEAKAAFNN 195

Query: 164 DQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPL 221
           D + +E++++    +   V+ D       +            K          PA  I  
Sbjct: 196 DMVYMEKFLENPRHVEVQVIADGQGGAIHLGERDCSMQRRHQK-----VVEEAPAPGITE 250

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           ++ K +      A   IG RG    +FL+   + + +++E+N 
Sbjct: 251 EMRKYIGERCTRACLEIGYRGAGTFEFLY--ENGEFYFIEMNT 291


>gi|121535612|ref|ZP_01667418.1| carbamoyl-phosphate synthase, large subunit [Thermosinus
           carboxydivorans Nor1]
 gi|121305782|gb|EAX46718.1| carbamoyl-phosphate synthase, large subunit [Thermosinus
           carboxydivorans Nor1]
          Length = 1073

 Score = 73.2 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 47/231 (20%), Positives = 95/231 (41%), Gaps = 11/231 (4%)

Query: 42  VGLVLAHLKPDLAFNVLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSK 97
           +  ++A  +PD     L G  G +  V    Q +L    +    + + A   + D+   K
Sbjct: 74  LEEIIAKERPDGLLATLGGQVGLNLAVELAKQGVLAKYGVELLGTPLTAIKKAEDRELFK 133

Query: 98  QVVSSCGVPVCPSILVNR--FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
             +   G PV  S +V+           I  P +++P       G  ++  +  +   + 
Sbjct: 134 LTMEEIGQPVPESTIVSDVASARSFAETIGYPLIVRPAYTLGGTGGGIVYNEAELVDVVT 193

Query: 156 QSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHV 214
           +   ++   Q+L+E+ V G  E+   VM DA+ +   I V   + +   +   + +S  V
Sbjct: 194 RGLKYSLIGQVLLERSVAGWKEIEYEVMRDAADN--CITVCNMENFD-PVGIHTGDSIVV 250

Query: 215 LPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            P++ +    Y+ ++  A    +++G  G     F  DP S K + +E+N 
Sbjct: 251 APSQTLNDYEYQMLRSAALKIIRSLGIEGGCNVQFALDPNSSKYYVIEVNP 301



 Score = 72.1 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 41/262 (15%), Positives = 83/262 (31%), Gaps = 28/262 (10%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ------ 69
           AL + G +   I         D D S  L    L  +   NVL     E  +VQ      
Sbjct: 580 ALREMGIESVIINNNPETVSTDFDTSDRLYFEPLTVEDVLNVLDKEKCEGVIVQFGGQTA 639

Query: 70  ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHL 123
                 L    +    + +     + D+ +  Q++    +P      V            
Sbjct: 640 INLAGPLAKAGVKILGTSVEDIDRAEDREKFDQLLEKLNIPRPRGASVTSVDQAITKARE 699

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  +  +   +  +   +    +LI++Y+ GIE+    + 
Sbjct: 700 IGYPVVVRPSYVLGGRAMEIVDNETELIEYMNHAVKASAAHPVLIDRYMQGIEIEVDAIA 759

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRG 242
           D         +   +           +S  V P K +  ++   V          +  RG
Sbjct: 760 DGQDVFIPGIMEHIERAGVHS----GDSIAVYPPKSLSNEMIDTVVDYTRRLALGLNVRG 815

Query: 243 ISRSDFLFDPLSRKVFWLEINV 264
           +    ++       ++ LE+N 
Sbjct: 816 LINIQYVI--SGGMLYVLEVNP 835


>gi|104784391|ref|YP_610889.1| pyruvate carboxylase subunit A [Pseudomonas entomophila L48]
 gi|95113378|emb|CAK18106.1| biotin carboxylase (A subunit of acetyl-CoA carboxylase)
           [Pseudomonas entomophila L48]
          Length = 471

 Score = 73.2 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 77/221 (34%), Gaps = 20/221 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            LH  +G   E+  +  I     I +            DK  +++ + + GVPV P    
Sbjct: 76  ALHPGYGFLSENAELAEICAERGIKFIGPAADVIRRMGDKTEARRTMIAAGVPVTPGTEG 135

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGD 164
            +      +     I  P ++K   GG   GI      + +  +        + ++   +
Sbjct: 136 NVADIHEALQEGDRIGYPVMLKATSGGGGRGIRRCNSREELEQNFPRVISEATKAFGSAE 195

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDI 223
             L +  V+   +   ++GD+  +V  +            K        + P  ++  + 
Sbjct: 196 VFLEKCIVNPKHIEAQILGDSFGNVVHLFERDCSIQRRNQKL-----IEIAPSPQLTPEQ 250

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              +  LA  A +A+        +FL      +V+++E+N 
Sbjct: 251 RAYIGDLAVRAAKAVNYENAGTVEFLL--ADGEVYFMEMNT 289


>gi|33519755|ref|NP_878587.1| acetyl CoA carboxylase, biotin carboxylase subunit [Candidatus
           Blochmannia floridanus]
 gi|33504100|emb|CAD83362.1| acetyl CoA carboxylase, biotin carboxylase subunit [Candidatus
           Blochmannia floridanus]
          Length = 450

 Score = 73.2 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 38/224 (16%), Positives = 78/224 (34%), Gaps = 24/224 (10%)

Query: 58  LHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV-PVCPSILV 113
           +H  +G   E+      +E     +         L  +K+ +  V+   GV P+      
Sbjct: 78  IHPGYGFLSENADFAEQVERSGFIFIGPSPETIRLMGNKISAISVMKKSGVKPIPGWNYE 137

Query: 114 NRFTMDSQHL-------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNH 162
           N   +++          I+ P +IK   GG   G+ ++     +   +    ++S    +
Sbjct: 138 NNKKINNIDFCNNHNININYPVIIKSAYGGGGHGMRIVTNKSDLKNAIQTTQIESKKIFN 197

Query: 163 GDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIP 220
            D + IEQY+     +   ++ D   +   +            K          PA  I 
Sbjct: 198 NDTIYIEQYLTQSRHIEIQILSDGKGNAIYLTERDCSIQRRHQK-----IIEETPAWGIT 252

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            ++   +        Q I  RG+   +FL+   +   F++E+N 
Sbjct: 253 PEMRTFIGECCVKVCQEINYRGVGTFEFLY--ENGNFFFIEMNT 294


>gi|332526111|ref|ZP_08402249.1| carbamoyl-phosphate synthase large subunit [Rubrivivax
           benzoatilyticus JA2]
 gi|332109954|gb|EGJ10582.1| carbamoyl-phosphate synthase large subunit [Rubrivivax
           benzoatilyticus JA2]
          Length = 1081

 Score = 73.2 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 32/198 (16%), Positives = 83/198 (41%), Gaps = 7/198 (3%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQHLISPPYV 129
           LE   +P   +   +  ++ D+ R ++++   G+   P+         +   H I  P V
Sbjct: 656 LERAGVPIIGTTPDSIDIAEDRERFQKLLHELGLKQPPNRTARTEEQALALAHEIGYPLV 715

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  D+ +   + ++   +    +L+++++ D +E+    + DA+  
Sbjct: 716 VRPSYVLGGRAMEIVHGDKDLERYMREAVKVSDKSPVLLDRFLDDAVEVDVDCIADATGK 775

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           V    + +    +    +S  ++  + P  +   +  E++R A    +A+G  G+  + F
Sbjct: 776 VLIGGIMEHVEAAGI--HSGDSACSLPPYSLSPALQDEMRRQAAAMAKALGVVGLMNTQF 833

Query: 249 LFDPLSRK--VFWLEINV 264
                     V+ LE+N 
Sbjct: 834 AVQGEGDDAVVYVLEVNP 851



 Score = 65.5 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 50/285 (17%), Positives = 99/285 (34%), Gaps = 42/285 (14%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +              DV        + V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYKVILVNSNPATIMTDPEMADVTYIEPITWQVVEKIIAKERPDAILP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G    +  +      +L    +    +   A   + D+M+ K  +++ G+    S  
Sbjct: 89  TMGGQTALNCALDLHRHGVLAKYGVEMIGANEHAIEKAEDRMKFKDAMTAIGLESAKSGI 148

Query: 111 -------ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
                  + V R           P VI+P       G  +    +       +    +  
Sbjct: 149 AHSMEEALAVQRRIQSEIGGTGFPMVIRPSFTMGGTGGGIAYNPEEFEEICKRGLDLSPT 208

Query: 164 DQLLIEQYVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IP 220
            +LLIE+ + G  E    V+ D + + +   ++   D           +S  V PA+ + 
Sbjct: 209 KELLIEESLIGWKEYEMEVVRDRADNCIIVCSIENLDPMGIHT----GDSITVAPAQTLT 264

Query: 221 LDIYKEVQRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
              Y+ ++  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 DKEYQLMRNASIAILREIGVDTGGSNVQFSVNPNNGRLIVIEMNP 309


>gi|229822746|ref|ZP_04448816.1| hypothetical protein GCWU000282_00034 [Catonella morbi ATCC 51271]
 gi|229787559|gb|EEP23673.1| hypothetical protein GCWU000282_00034 [Catonella morbi ATCC 51271]
          Length = 1059

 Score = 73.2 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 53/274 (19%), Positives = 106/274 (38%), Gaps = 33/274 (12%)

Query: 20  KACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNVL 58
           +AC S L++ G++V  ++        DR +                ++   +PD     L
Sbjct: 32  QACLS-LKEEGYQVILVNSNPATIMTDRQIADKVYMEPLTLEFVSKIIRKERPDALLPTL 90

Query: 59  HGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
            G  G +  VQ     +L+   +    + + +   + D+   +Q++   G PV  S +V 
Sbjct: 91  GGQVGLNLAVQLHRQGVLDQYGVELLGTKLASIEQAEDRQLFRQLMQELGEPVPESEIVT 150

Query: 115 RFTM--DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                 D    I  P +++P       G  +   DQ +   +     ++   Q L+E+ +
Sbjct: 151 NLDQARDFVAQIGYPVIVRPAFTMGGTGGGICYNDQDLDEIVSSGLHYSPVTQCLLEKSI 210

Query: 173 DG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRL 230
            G  E+   VM DA+   T I V   +     +   + +S  V P++ +    Y  ++ +
Sbjct: 211 AGYKEIEYEVMRDAND--TAIVVCNMENID-PVGIHTGDSVVVAPSQTLTDREYHMLRDV 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +    +A+   G        DP S   + +E+N 
Sbjct: 268 SLKIIRALKIEGGCNVQLALDPDSFNYYIIEVNP 301



 Score = 59.8 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 24/229 (10%), Positives = 79/229 (34%), Gaps = 18/229 (7%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC--PSILVNRFTMDSQHLISPPYV 129
           L+   +    + +     + ++ + +Q++    +P     +       + +   I  P +
Sbjct: 646 LQRHGVKILGTSLEEIDKAENRDKFEQLLHELDIPQPLGKTASDTETAVANAASIGYPVL 705

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           ++P        + ++ ++  +   +  +   +    +L ++Y+ G E+    + D    V
Sbjct: 706 VRPSYVLGGRAMEIVYEEADLRRYMETAVRVSPEHPVLTDRYLIGQEIEVDAICDGQTVV 765

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               +   +           +S  V P + +     +++        + +   G+    +
Sbjct: 766 IPGIMEHIERAGVHS----GDSIAVYPPQTLSQAQKEQLVDYTIRLAKGLNIVGLLNIQY 821

Query: 249 LFDPLSRKVFWLEIN-----VQPGMTPVSIFPEMAAYA----GYSFREL 288
           +      +++ LE+N       P ++ ++  P          G S  +L
Sbjct: 822 VLSK--GELYVLEVNPRSSRTVPFLSKITGVPMAQLAMQAILGQSLSDL 868


>gi|184200978|ref|YP_001855185.1| carbamoyl phosphate synthase large subunit [Kocuria rhizophila
           DC2201]
 gi|226700929|sp|B2GI87|CARB_KOCRD RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|183581208|dbj|BAG29679.1| carbamoyl-phosphate synthase large chain [Kocuria rhizophila
           DC2201]
          Length = 1106

 Score = 73.2 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 53/289 (18%), Positives = 104/289 (35%), Gaps = 38/289 (13%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI---------DVD------------RSVGLV 45
           G ++E + S   G      L+D G +V  +         D +             +V  +
Sbjct: 21  GQAAEFDYS---GTQALRVLKDEGLRVILVNSNPATIMTDPEFADATYVEPITPETVEKI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +A  +PD     L G    +  +       LE   +    + + A  L  D+   K VV 
Sbjct: 78  IAKERPDAVLPTLGGQTALNTALALDANGALEKYGVELIGADVDAINLGEDREAFKGVVE 137

Query: 102 SCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
            CG     S++V+     + +   +  P V++P      LG  +   +  +         
Sbjct: 138 RCGAESARSVIVHSMDEALAAAEQLGYPMVVRPSFTMGGLGSGLAYNETDLHRIAGAGIQ 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGD-ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
           ++   ++L+E+ + G  E    +M D     V   ++   D           +S  V PA
Sbjct: 198 YSPTSEVLLEESILGWKEYELEMMRDAKDNVVVVCSIENVDPVGVHT----GDSVTVAPA 253

Query: 218 -KIPLDIYKEVQRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
             +    Y+ ++ +A    + +G   G     F  +P + +V  +E+N 
Sbjct: 254 LTLTDREYQRMRDIAIAVIREVGVDTGGCNIQFAVEPDTGRVVVIEMNP 302



 Score = 57.8 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 33/197 (16%), Positives = 76/197 (38%), Gaps = 10/197 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--QHLISPPYV 129
           L+   +P   +   A  L+ D+    +V++  G+    +   + F   S   H I  P +
Sbjct: 656 LKAAGVPILGTSPEAIDLAEDRGEFARVLTEAGLRQPKNGTAHDFEEASRIAHEIGYPVL 715

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTC-GVMGDASL 187
           ++P       G+ ++  + S+   L  ++  +     LI++++ D IE+    +      
Sbjct: 716 VRPSYVLGGRGMEIVYDEASLKTYLDNATEVSPSRPALIDKFLEDAIEIDVDALFDGRDC 775

Query: 188 DVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
            V  I     +   +    S  ++  + P  +  D+   V+       + +G +G+    
Sbjct: 776 YVGGIMEHIEEAGIH----SGDSACVLPPITLAPDVVTRVREATEAIARGVGVKGLINLQ 831

Query: 248 FLFDPLSRKVFWLEINV 264
           F     S  ++ +E N 
Sbjct: 832 FAL--ASDVLYVIEANP 846


>gi|258592883|emb|CBE69192.1| carbamoyl phosphate synthase, large subunit [NC10 bacterium 'Dutch
           sediment']
          Length = 1099

 Score = 73.2 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 58/278 (20%), Positives = 98/278 (35%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQID------------VDRS---------VGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++             DR+         V  ++A  +PD    
Sbjct: 29  SGTQACKALREEGYRVILVNSNPATIMTDPEIADRTYVEPLTVSVVEQIIARERPDALLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            L G  G +  V    + IL+   +    + + A   + D+   KQ +   GV V  S  
Sbjct: 89  TLGGQTGLNLAVALAEEGILDRYGVEMIGAKLQAIKKAEDRDLFKQAMQKIGVEVPESGH 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
              +         I  P +I+P       G  +          +    S +   Q+LIE 
Sbjct: 149 AYSHEEARSIVERIGYPAIIRPSFTLGGAGGSIAYNRDEFDEQVQWGLSMSPVHQVLIEA 208

Query: 171 YVDG-IELTCGVMGD-ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            V G  E    VM D     V   ++   D           +S  V PA+ +    Y+ +
Sbjct: 209 SVIGWKEFELEVMRDLKDNVVIICSIENFDPMGVHT----GDSITVAPAQTLSDKEYQLM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  A    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RDAAIAIIREIGVETGGSNIQFAVNPRNGQMLAIEMNP 302



 Score = 64.0 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 37/230 (16%), Positives = 86/230 (37%), Gaps = 19/230 (8%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--SILVNRFTMDSQHLISPPYV 129
           LE   +    +   A   + D+ R KQV+    +   P  + +     +     I  P +
Sbjct: 675 LERAGVKILGTPPDAIDRAEDRERFKQVLQRLDLNQPPNGTAVSVSEALRIARQIGYPVL 734

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  + S+   + ++   +    +L+++++ D IE+    + D    
Sbjct: 735 VRPSYVLGGRAMEIVYNESSLQEYMARAVQASLDHPVLVDKFLEDAIEMDVDALCDGREV 794

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           V    +   +       +S  ++  + P  +P  +  +++         +G  G+    F
Sbjct: 795 VIGGIMEHIEAAGV---HSGDSACSLPPRSVPQSLLDQIRAQTKAMALELGVIGLINIQF 851

Query: 249 LFDPLSRKVFWLEIN-----VQPGMTPVSI---FPEMAAY--AGYSFREL 288
                   V+ LE+N       P     ++     ++AA   AG S +EL
Sbjct: 852 AI--KDGIVYVLEVNPRASRTVP-FVSKAVGVPLAKLAAKVMAGMSLKEL 898


>gi|260770655|ref|ZP_05879586.1| biotin carboxylase of acetyl-CoA carboxylase [Vibrio furnissii CIP
           102972]
 gi|260614381|gb|EEX39569.1| biotin carboxylase of acetyl-CoA carboxylase [Vibrio furnissii CIP
           102972]
 gi|315178393|gb|ADT85307.1| acetyl-CoA carboxylase biotin carboxylase subunit [Vibrio furnissii
           NCTC 11218]
          Length = 447

 Score = 73.2 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 80/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         L  DK+ +   +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAEQVERSGFIFVGPKADTIRLMGDKVSAITAMKKAGVPCVPGSDG 136

Query: 112 LVNRFTMDS---QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
            ++   + +      I  P +IK   GG   G+ V++ +  +   +     ++ +  + D
Sbjct: 137 PLDNDEVKNRAHAKRIGYPVIIKASGGGGGRGMRVVRSEAELVNAISMTRAEAKAAFNND 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+Y++    +   V+ D       +            K          PA  I  +
Sbjct: 197 MVYMEKYLENPRHVEVQVLADGQGSAIHLGERDCSMQRRHQK-----VVEEAPAPGITEE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + K +      A   IG RG    +FL+   + + +++E+N 
Sbjct: 252 MRKYIGERCTRACIEIGYRGAGTFEFLY--ENGEFYFIEMNT 291


>gi|85859418|ref|YP_461620.1| pyruvate carboxylase biotin carboxylase subunit [Syntrophus
           aciditrophicus SB]
 gi|85722509|gb|ABC77452.1| pyruvate carboxylase biotin carboxylase subunit [Syntrophus
           aciditrophicus SB]
          Length = 486

 Score = 73.2 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 36/245 (14%), Positives = 82/245 (33%), Gaps = 25/245 (10%)

Query: 35  QIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSM 91
            +D+D+ +         D     +H  +G   E     A      I +            
Sbjct: 65  YLDIDK-IIWAARKSGAD----AIHPGYGFLSEIPEFSAECARAGIVFIGPPPDVIRNLG 119

Query: 92  DKMRSKQVVSSCGVPVCPSI-------LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
           +K+ ++ ++    +P  P            R  +        P ++K   GG   GI  +
Sbjct: 120 NKVVARDIIEKANLPFIPGTKDLFRGDAGLREAIAFGRRYGYPVMLKASSGGGGRGIRKV 179

Query: 145 KKDQ----SIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDF 199
             +      +P    ++ S    + + +E+ ++    +   ++ D+  +V  +       
Sbjct: 180 INEADLEIQLPQARAEALSAFGDENVYVEKCIEAPRHVEIQILADSYGNVIHLGSRDCSI 239

Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
                K        + PA +P D+   +   A  A +  G       +FL D  + + ++
Sbjct: 240 QRRHQKLL-----EIAPADLPPDVLNAMYGAAIEAARVAGYVNAGTVEFLVDSRTNEFWF 294

Query: 260 LEINV 264
           +E+N 
Sbjct: 295 MEMNT 299


>gi|87303373|ref|ZP_01086161.1| carbamoyl-phosphate synthase, large subunit [Synechococcus sp. WH
           5701]
 gi|87282021|gb|EAQ73983.1| carbamoyl-phosphate synthase, large subunit [Synechococcus sp. WH
           5701]
          Length = 1101

 Score = 73.2 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 57/283 (20%), Positives = 98/283 (34%), Gaps = 44/283 (15%)

Query: 18  SGKACASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLA------------FN 56
           SG     AL D G++V  +         D + +    +  L PD+               
Sbjct: 29  SGTQACKALRDEGYEVVLVNSNPASIMTDPEMADRTYIEPLTPDVVRQVIELERPDALLP 88

Query: 57  VLHGN--------FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
            + G           EDG     LE   +    + + A   + D+   K+ +   GV VC
Sbjct: 89  TMGGQTALNLAVALAEDGT----LERFGVELIGANLQAIQKAEDRRLFKEAMERIGVAVC 144

Query: 109 PSIL---VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
           PS +   +       + + + P +I+P       G  +    +            +   Q
Sbjct: 145 PSGIASSLEEAERVGEEIGTYPRIIRPAFTLGGSGGGIAYNPEEFQAFCKSGLEASPVSQ 204

Query: 166 LLIEQYVDG-IELTCGVMGD-ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
           +LIEQ + G  E    VM D A   V   ++   D           +S  V PA+ +   
Sbjct: 205 ILIEQSLIGWKEFELEVMRDLADNVVIICSIENLDPMGVHT----GDSITVAPAQTLTDR 260

Query: 223 IYKEVQRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
            Y+ ++  +    + IG   G S   F  +P +  V  +E+N 
Sbjct: 261 EYQRLRDQSIAIIREIGVETGGSNIQFAINPANGDVVVIEMNP 303



 Score = 49.7 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 30/212 (14%), Positives = 73/212 (34%), Gaps = 13/212 (6%)

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ--HLISPPYVIKPLKGGSS 138
            +   +   + D+ + + ++    +    + L             +  P V++P      
Sbjct: 687 GTSPESIDQAEDREQFEAILRQLNIRQPRNGLARSEAEARAVADRVGYPVVVRPSYVLGG 746

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKS 197
             + V+  +  +   ++++        +LI+QY++  IE+    + D    V    + + 
Sbjct: 747 RAMEVVFDEAELNRYMVEAVQVEPDHPVLIDQYLENAIEVDVDALADRQGMVVIGGLME- 805

Query: 198 DFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256
             +       S +S   LPA  +       +++       A+   G+    F       +
Sbjct: 806 --HIEPAGIHSGDSACALPAVSLSQQALATIRQWTEALALALDVSGLINLQFAVQAE--R 861

Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           VF +E N +   T     P +A   G    ++
Sbjct: 862 VFIIEANPRASRT----VPFVAKATGVPLAKI 889


>gi|77406311|ref|ZP_00783376.1| carbamoyl-phosphate synthase, large subunit [Streptococcus
           agalactiae H36B]
 gi|77175087|gb|EAO77891.1| carbamoyl-phosphate synthase, large subunit [Streptococcus
           agalactiae H36B]
          Length = 1060

 Score = 73.2 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 58/315 (18%), Positives = 119/315 (37%), Gaps = 39/315 (12%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQID-------VDRSVGL--------------V 45
           G ++E + S   G     +L++ G++V  ++        D+ +                +
Sbjct: 21  GQAAEFDYS---GTQACLSLKEEGYQVVLVNSNPATIMTDKDIADKVYIEPITLEFVTRI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           L   +PD     L G  G +  +      ILE L +    + + A   + D+   KQ++ 
Sbjct: 78  LRKERPDALLPTLGGQTGLNMAMALSKNGILEELNVELLGTKLSAIDKAEDRDLFKQLME 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
               P+  S +VN     +     I  P +++P       G  +    + +     +   
Sbjct: 138 ELNQPIPESEIVNSVEEAIQFAEQIGYPLIVRPAFTLGGTGGGMCDNQEQLVDITTKGLK 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   Q LIE+ + G  E+   VM DA+ +   + V   + +   +   + +S    PA+
Sbjct: 198 LSPVTQCLIERSIAGFKEIEYEVMRDAADNA--LVVCNMENFD-PVGIHTGDSIVFAPAQ 254

Query: 219 IPLDIYKE-VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
              D+  + ++  +    +A+   G        DP S K + +E+N  P ++  S     
Sbjct: 255 TLSDVENQLLRDASLDIIRALKIEGGCNVQLALDPNSFKYYVIEVN--PRVSRSS--ALA 310

Query: 278 AAYAGYSFRELLLWM 292
           +   GY   +L   +
Sbjct: 311 SKATGYPIAKLAAKI 325



 Score = 67.5 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/214 (13%), Positives = 75/214 (35%), Gaps = 14/214 (6%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           L    +    + +     + ++ + +  + +  +P  P          +++   I  P +
Sbjct: 646 LNKAGVKILGTQLEDLDRAENRKQFEATLQALNIPQPPGFTATTEEEAVNAAQKIGYPVL 705

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           ++P        + +++ ++ +   +  +   +    +LI+ Y+   E     + D     
Sbjct: 706 VRPSYVLGGRAMKIVENEEDLRHYMTTAVKASPDHPVLIDAYLISKECEVDAISDGQ--- 762

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
             I +P    +       S +S  V P +     I + +          + C G+    F
Sbjct: 763 -NILIPGIMEHIERAGVHSGDSMAVYPPQTXSXTIIETIVDYTKRLAIGLNCIGMMNIQF 821

Query: 249 LFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277
           +     +KV+ +E+N       P ++ V+  P  
Sbjct: 822 VI--KDQKVYVIEVNPRASRTLPFLSKVTHIPMA 853


>gi|27380378|ref|NP_771907.1| propionyl-coenzyme A carboxylase alpha polypeptide [Bradyrhizobium
           japonicum USDA 110]
 gi|27353542|dbj|BAC50532.1| propionyl-coenzyme A carboxylase alpha polypeptide [Bradyrhizobium
           japonicum USDA 110]
          Length = 671

 Score = 73.2 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 75/220 (34%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E       LE   + +      A A   DK+ SK+  +   V   P    
Sbjct: 77  AVHPGYGFLSEREAFPRALEAAGLVFIGPNPGAIAAMGDKIESKKAAAKAKVSTVPGHLG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSWNHGDQ 165
            I  ++  +     I  P +IK   GG   G+ +      +     L   ++ +    D+
Sbjct: 137 VIEDDKHAVRIADEIGYPVMIKASAGGGGKGMRIANSKSEVAEGFNLAKAEAKASFGDDR 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+++ D   +   V+GD   +V  +   +        K             +     
Sbjct: 197 VFVEKFIVDPRHIEIQVLGDKHGNVIYLGERECSIQRRNQK----VIEEAPSPLLDEATR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +++   A    +A+        +F      +  ++LE+N 
Sbjct: 253 RKMGEQAVALAKAVNYDSAGTVEF-VAGQDKSFYFLEMNT 291


>gi|302388641|ref|YP_003824462.1| cyanophycin synthetase [Thermosediminibacter oceani DSM 16646]
 gi|302199269|gb|ADL06839.1| cyanophycin synthetase [Thermosediminibacter oceani DSM 16646]
          Length = 875

 Score = 73.2 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 20/110 (18%), Positives = 46/110 (41%), Gaps = 3/110 (2%)

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYVIKPLKGGSSLGIIVIKK 146
           ++ DK  +K++++  G+PV    +V        +   +  P VIKP+ G    G+ +   
Sbjct: 210 IACDKTLTKKMLTLAGIPVPEGTVVCSEEEAVRAARELGFPVVIKPVDGNQGNGVSL-NL 268

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK 196
           +    +      +  +  ++++E+Y+ G      V+G   +   E     
Sbjct: 269 ENEAEVAEAFRLAAGYSPRVIVEKYIRGRHYRVLVVGGKFVCAAERIPAH 318


>gi|560527|gb|AAA50948.1| pyc [Mycobacterium tuberculosis]
          Length = 1124

 Score = 73.2 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 38/247 (15%), Positives = 82/247 (33%), Gaps = 18/247 (7%)

Query: 28  DAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87
           D G  V        +         D  +   +G   E+  + A      I +        
Sbjct: 53  DIGHPVHAYLSVDEIVATARRAGADAIYPG-YGFLSENPDLAAACAAAGISFVGPSAEVL 111

Query: 88  ALSMDKMRSKQVVSSCGVPV----CPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIV 143
            L+ +K R+       G+PV     PS  V+   +     +  P  +K + GG   G+  
Sbjct: 112 ELAGNKSRAIAAAREAGLPVLMSSAPSASVDEL-LSVAAGMPFPLFVKAVAGGGGRGMRR 170

Query: 144 IKKDQSIPLDLLQS-----SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD 198
           +    ++P  +  +     S++      L +  ++   +   ++ D   DV  +      
Sbjct: 171 VGDIAALPEAIEAASREAESAFGDPTVYLEQAVINPRHIEVQILADNLGDVIHLYE---- 226

Query: 199 FYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
                ++        + PA  +  ++  ++   A    + IG       +FL D    + 
Sbjct: 227 -RDCSVQRRHQKVIELAPAPHLDAELRYKMCVDAVAFARHIGYSCAGTVEFLLDER-GEY 284

Query: 258 FWLEINV 264
            ++E+N 
Sbjct: 285 VFIEMNP 291


>gi|124004234|ref|ZP_01689080.1| pyruvate carboxylase subunit A [Microscilla marina ATCC 23134]
 gi|123990304|gb|EAY29803.1| pyruvate carboxylase subunit A [Microscilla marina ATCC 23134]
          Length = 514

 Score = 73.2 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 78/220 (35%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP----VCP 109
            +H  +G   E+      +   +I +      A  +   K+ +K+ VS   +P       
Sbjct: 85  AIHPGYGFLSENATFARRVTEADIIFIGPSPEAIEVMGSKLAAKEAVSKYDIPMVPGTPK 144

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK----DQSIPLDLLQSSSWNHGDQ 165
           +I            I  P +IK   GG   G+ V++     ++ +   + ++ S      
Sbjct: 145 AITDIEAAKVKAKEIGYPILIKASAGGGGKGMRVVENPADFEEQMNRAVSEAVSAFGDGA 204

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+Y+     +   V+GD   +V  +   +        K           A +  +I 
Sbjct: 205 VFIEKYITSPKHIEIQVLGDTQGNVIHLFERECSIQRRHQK----VIEEAPSAVVTPEIR 260

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +   A    +A    G    +F+ D      ++LE+N 
Sbjct: 261 QAMGEAAVNVAKACNYYGAGTVEFIADEHLN-FYFLEMNT 299


>gi|90076918|dbj|BAE88139.1| unnamed protein product [Macaca fascicularis]
          Length = 525

 Score = 73.2 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 75/220 (34%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      L   ++ +      A     DK+ SK +     V   P    
Sbjct: 138 AVHPGYGFLSENKEFARCLAAEDVIFIGPDTHAIQAMGDKIESKLLAKKAEVNTIPGFDG 197

Query: 112 LVNRFTMDS--QHLISPPYVIKPLKGGSSLGIIVIKKDQS----IPLDLLQSSSWNHGDQ 165
           +V            I  P +IK   GG   G+ +   D+       L   +++S    D+
Sbjct: 198 VVKDAEEAVRIAREIGYPVMIKASAGGGGKGMRIAWDDEETRDGFRLSSQEAASSFGDDR 257

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           LLIE+++D    +   V+GD   +   +   +        K             +  +  
Sbjct: 258 LLIEKFIDNPRHIEVQVLGDKHGNALWLNERECSIQRRNQK----VVEEAPSIFLDAETR 313

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +   A    +A+        +FL D      ++LE+N 
Sbjct: 314 RAMGEQAVALARAVKYSSAGTVEFLVDSKKN-FYFLEMNT 352


>gi|159900720|ref|YP_001546967.1| acetyl-CoA carboxylase, biotin carboxylase [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159893759|gb|ABX06839.1| acetyl-CoA carboxylase, biotin carboxylase [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 588

 Score = 73.2 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 72/220 (32%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       +   I +      A  L   K+ ++QV     VP+ P    
Sbjct: 78  AIHPGYGFLSENTDFVRTCDAAGIAFIGPTADAMDLMGGKIHARQVALRAHVPLVPGTTE 137

Query: 114 N----RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
                   ++       P  IK   GG   G+ V  + + +         ++ +     +
Sbjct: 138 AVESVAEALELGEQYGYPIAIKASAGGGGRGLKVAYQPEEVEFAFESARREAEAAFKNGE 197

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           L +E+YV D   +   ++ D   +V  +            K             +  ++ 
Sbjct: 198 LFVEKYVLDPRHIEIQILADQYGNVVYLGERDCSVQRRHQK----LIEETPSPAVSPELR 253

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +   A    +     G    +FL  P   + ++LE+N 
Sbjct: 254 RTMGECALRLCRETSYVGAGTLEFLLAP-DGQFYFLEMNT 292


>gi|15669414|ref|NP_248224.1| pyruvate carboxylase subunit A [Methanocaldococcus jannaschii DSM
           2661]
 gi|2493313|sp|Q58626|PYCA_METJA RecName: Full=Pyruvate carboxylase subunit A; AltName: Full=Pyruvic
           carboxylase A
 gi|1591860|gb|AAB99232.1| biotin carboxylase (accC) [Methanocaldococcus jannaschii DSM 2661]
          Length = 501

 Score = 73.2 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 78/220 (35%), Gaps = 18/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+      ++     +      A      K+ +K+++   GVP+ P    
Sbjct: 77  AIHPGYGFLAENAEFARAVKKAGFEFIGPNPDAIEAMGSKINAKKIMKKAGVPLIPGSEG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGDQ 165
            I      ++    I  P V+K   GG  +G+ V    + +          + S      
Sbjct: 137 AIEDIDEAIEIAEAIGFPVVVKASAGGGGMGMSVAYSKEELKEVIESARNIAKSAFGDPT 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+Y++    +   ++GD   ++  +   +        K             +  ++ 
Sbjct: 197 VFIEKYLENPRHIEIQLLGDKHGNIIHLGDRECSIQRRHQK----LIEEAPSPIMTEELR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +   A  A +AI        +FL+   +   ++LE+N 
Sbjct: 253 ERMGEAAIKAGKAINYDSAGTVEFLY--ENGNFYFLEMNT 290


>gi|298370002|ref|ZP_06981318.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Neisseria sp.
           oral taxon 014 str. F0314]
 gi|298281462|gb|EFI22951.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Neisseria sp.
           oral taxon 014 str. F0314]
          Length = 456

 Score = 72.8 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 37/217 (17%), Positives = 80/217 (36%), Gaps = 18/217 (8%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI--LVNRF 116
           +G   E+      +E     +         L  DK+ +K  +   GVP  P     +   
Sbjct: 82  YGFLAENANFAEQVEQSGFTFIGPRAETIRLMGDKVSAKHAMIEAGVPCVPGSDGALPDD 141

Query: 117 TMD---SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQLLIE 169
             +   +   +  P +IK   GG   G+ V+++ + +   +     ++ +      + +E
Sbjct: 142 PAEILKTADKVGYPVIIKASGGGGGRGMRVVERKEDLIKSVEMTKTEAGAAFGNPMVYME 201

Query: 170 QYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
           +Y+     +   V+ D   +   +A          L+          PA  I  +  +++
Sbjct: 202 RYLQRPRHVEIQVLADEHGNAIYLAE-----RDCSLQRRHQKVIEEAPAPFITAEQREKI 256

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +    A + IG RG    +FL+     + F++E+N 
Sbjct: 257 GQACADACKRIGYRGAGTFEFLY--EDGEFFFIEMNT 291


>gi|289192333|ref|YP_003458274.1| acetyl-CoA carboxylase, biotin carboxylase [Methanocaldococcus sp.
           FS406-22]
 gi|288938783|gb|ADC69538.1| acetyl-CoA carboxylase, biotin carboxylase [Methanocaldococcus sp.
           FS406-22]
          Length = 501

 Score = 72.8 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 78/220 (35%), Gaps = 18/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+      ++     +      A      K+ +K+++   GVP+ P    
Sbjct: 77  AIHPGYGFLAENAEFARAVKKAGFEFIGPNPDAIEAMGSKINAKKIMKKAGVPLIPGSEG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGDQ 165
            I      ++    I  P V+K   GG  +G+ V    + +          + S      
Sbjct: 137 AIEDIDEAVEIAEAIGFPVVVKASAGGGGMGMSVAYSKEELKEVIESARNIAKSAFGDPT 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+Y++    +   ++GD   ++  +   +        K             +  ++ 
Sbjct: 197 VFIEKYLENPRHIEIQLLGDRHGNIIHLGDRECSIQRRHQK----LIEEAPSPIMTEELR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +   A  A +AI        +FL+   +   ++LE+N 
Sbjct: 253 ERMGEAAIKAGKAINYDSAGTVEFLY--ENGNFYFLEMNT 290


>gi|126662565|ref|ZP_01733564.1| biotin carboxylase, subunit of acetyl CoA carboxylase
           [Flavobacteria bacterium BAL38]
 gi|126625944|gb|EAZ96633.1| biotin carboxylase, subunit of acetyl CoA carboxylase
           [Flavobacteria bacterium BAL38]
          Length = 449

 Score = 72.8 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 80/221 (36%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-SIL 112
            +H  +G   E+     I +   I +  +         DK  +K  +   GVP  P S+ 
Sbjct: 77  AIHPGYGFLSENAKFSKICQEHGIKFIGASPEMIDRMGDKASAKSTMIEAGVPCVPGSVG 136

Query: 113 VNRFTMDSQHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGD 164
           +     +++ L      P ++K   GG   G+  + K + +           ++++ +  
Sbjct: 137 ILDSYEEAEKLADEFGYPVMLKATAGGGGKGMRAVWKKEDLLKAWEGARQESAAAFGNDG 196

Query: 165 QLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
             L E+ ++    +   V+GD+      ++           K     +       +  ++
Sbjct: 197 MYL-EKLIEEPRHIEIQVVGDSYGKACHLSERDCSVQRRHQK----LTEETPSPFMTDEL 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +   A  A + I   G    +FL D   R  +++E+N 
Sbjct: 252 REAMGTAAVKAAEYIKYEGAGTVEFLVDKH-RNFYFMEMNT 291


>gi|320647436|gb|EFX16231.1| carbamoyl phosphate synthase large subunit [Escherichia coli
           O157:H- str. 493-89]
 gi|320652770|gb|EFX21008.1| carbamoyl phosphate synthase large subunit [Escherichia coli
           O157:H- str. H 2687]
          Length = 1073

 Score = 72.8 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 98/278 (35%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D +              V  ++   +PD+   
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDVVLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +    Q +LE   +    +   A   + D+ R    +   G+    S +
Sbjct: 89  TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGI 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     +     +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHTMEEALAVAADVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + +   +   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIEN----FDAMGIHTGDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RNASMAVLREIGVETGGSNVQFAVNPKNGRLIVIEMNP 302



 Score = 60.1 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 30/197 (15%), Positives = 74/197 (37%), Gaps = 10/197 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYV 129
           LE   +P   +   A   + D+ R +  V    +    +  V    M  +    I  P V
Sbjct: 654 LEAAGVPVIGTSPDAIDRAEDRERFQHAVDRLKLKQPANATVTAIEMAVEKAKEIGYPLV 713

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  +  +      + S ++   +L++ ++ D +E+    + D  + 
Sbjct: 714 VRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDDAVEVDVDAICDGEMV 773

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           +    +   +    +    S +S   LPA  +  +I   +++        +  RG+    
Sbjct: 774 LIGGIMEHIE----QAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRGLMNVQ 829

Query: 248 FLFDPLSRKVFWLEINV 264
           F     + +V+ +E+N 
Sbjct: 830 FAV--KNNEVYLIEVNP 844


>gi|313237544|emb|CBY12692.1| unnamed protein product [Oikopleura dioica]
          Length = 691

 Score = 72.8 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 47/221 (21%), Positives = 80/221 (36%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      L+   I +      A     DK+ SK V    GV V P    
Sbjct: 108 AVHPGYGFLSENAEFATKLKENGITFIGPPNGAIISMGDKIESKVVAEKAGVNVIPGFNG 167

Query: 112 LVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGD 164
           +V      ++  + I  P +IK   GG   G+ V   D              +SS+   D
Sbjct: 168 VVKDLDHAIEISNDIGYPVMIKASAGGGGKGMRVAWNDAEAKEGYYLSKQEAASSFG-DD 226

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           +LLIE++VD    +   ++ D   +V  +   +        K             I  ++
Sbjct: 227 RLLIEKFVDSPRHIELQILADKHGNVVYLNERECSVQRRNQK----VVEEAPSVFIDPEL 282

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              + + A    +A+G       +FL D      ++LE+N 
Sbjct: 283 RARMGKQACELARAVGYNSAGTVEFLVDSEKN-FYFLEMNT 322


>gi|291460417|ref|ZP_06599807.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Oribacterium
           sp. oral taxon 078 str. F0262]
 gi|291416984|gb|EFE90703.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Oribacterium
           sp. oral taxon 078 str. F0262]
          Length = 457

 Score = 72.8 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 32/220 (14%), Positives = 71/220 (32%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+       E   I +            +K  ++  +   GVPV P    
Sbjct: 77  AIHPGYGFLSENSAFARSCEENGILFVGPKAEVIDEMGNKSAARSRMEKAGVPVVPGTKE 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGD 164
            +      ++    I  P +IK   GG   G+     ++    +        ++++    
Sbjct: 137 PVYDAEKALERAREIGFPIMIKASSGGGGKGMRECLSEEDFEAEFNTAQRESANAFGDDS 196

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             L +  +    +   +MGD+  +V  +            K             +     
Sbjct: 197 MYLEKLILHPRHVEVQIMGDSFGNVVSLGERDCSVQRNHQK----LIEESPSPAVSDGTR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +++   A  A +A+   G    +F+ D      +++E+N 
Sbjct: 253 RKMMEAAVRAAKAVHYTGAGTIEFIMD-QGGAFYFMEMNT 291


>gi|253999101|ref|YP_003051164.1| pyruvate carboxylase subunit A [Methylovorus sp. SIP3-4]
 gi|253985780|gb|ACT50637.1| acetyl-CoA carboxylase, biotin carboxylase [Methylovorus sp.
           SIP3-4]
          Length = 472

 Score = 72.8 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 45/250 (18%), Positives = 91/250 (36%), Gaps = 23/250 (9%)

Query: 32  KVSQIDVDRSVGLVLAHLKPDLAF----NVLHGNFG---EDGLVQAILELLEIPYTHSGI 84
           +   I  D  VG + AH   +LA     + LH  +G   E+  +  I     I +     
Sbjct: 47  EAYNIGSDPVVGYLNAHNIVNLAVASGCDALHPGYGFLSENPELAEICARRGIKFIGPDA 106

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSLG 140
                  DK++++  +   G+P  P    N   ++        I  P ++K   GG   G
Sbjct: 107 KVIRQMGDKIQARNAMIKAGIPCVPGSNGNLADLEEARTLARKIGYPVMLKATNGGGGRG 166

Query: 141 IIVIKKDQSIPLDL-----LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195
           I     ++ +  +        S ++   +  L +  V+   +   +M D+  +V  +   
Sbjct: 167 IRRCNDEKELLSNYDRVISEASKAFGKPEVFLEKCVVNPKHIEVQIMADSHGNVIHLFER 226

Query: 196 KSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
                    K        + P  ++     + + +LA  A +A+G +     +FL D   
Sbjct: 227 DCSIQRRNQKL-----IEIAPSPQLSNAQREYIGKLAVKAAKAVGYKNAGTVEFLLD-SD 280

Query: 255 RKVFWLEINV 264
              +++E+N 
Sbjct: 281 NSFYFMEMNT 290


>gi|126459988|ref|YP_001056266.1| L-2-aminoadipate N-acetyltransferase [Pyrobaculum calidifontis JCM
           11548]
 gi|126249709|gb|ABO08800.1| L-2-aminoadipate N-acetyltransferase [Pyrobaculum calidifontis JCM
           11548]
          Length = 267

 Score = 72.8 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 49/261 (18%), Positives = 94/261 (36%), Gaps = 41/261 (15%)

Query: 20  KACASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQA 70
           K   +AL+ AG  V  +         DV +   + LA         V H      GL   
Sbjct: 7   KLLINALQAAGLSVRVLHAESFLAPDDVGQVGVIRLAARS--RVVPVAHTYEARGGL--- 61

Query: 71  ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPY 128
                    + +   +  +S DK  +   +   GVP   + L         +   +  P 
Sbjct: 62  ---------SINTAQSLEVSHDKYLTYLRLRDAGVPTPRTFLAFGLEGAKAAAEKLGYPV 112

Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQL-LIEQYVD--GIELTCGVMGDA 185
           ++KP  G     + + K  + +   + Q  +   G  L L+++Y++  G ++   V+G+ 
Sbjct: 113 IVKPTDGSWGRFVSLAKSPEDLEAIVAQRLAMESGLHLYLVQEYLEKPGRDIRVTVVGER 172

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
           ++             S + + ++       P KI  ++ +    +A  A++A+G    S 
Sbjct: 173 AVAAIY------RINSADWRTNTARGGKAEPVKIDPELEE----VAVKANKAVGTF-YSG 221

Query: 246 SDFLFDPLSRKVFWLEINVQP 266
            D       R    LE+N  P
Sbjct: 222 VD--VVETPRGYVVLEVNGVP 240


>gi|22095501|sp|Q8RSS3|CARB_HALER RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|18958215|emb|CAD24315.1| carbamoylphosphate synthetase large subunit [Halomonas eurihalina]
          Length = 1076

 Score = 72.8 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 48/278 (17%), Positives = 98/278 (35%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + GF+V  +              D         ++V  ++   +PD    
Sbjct: 29  SGAQACKALREEGFRVILVNSNPATIMTDPVMADATYIEPITWQAVEKIIEAERPDAVLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      +LE   +    +   A  ++ D+    Q +   G+    + +
Sbjct: 89  TMGGQTALNCALDLDKHGVLEKFGVEMIGANADAINMAEDRDLFDQAMKRIGLECPKAKV 148

Query: 113 VNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +        Q  +  P +I+P       G  V    +       +    ++  +LLI++
Sbjct: 149 AHSMDEAWQIQSELGFPVIIRPSYTMGGSGGGVAYNKEEFEEICTRGFELSNNHELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + + +   A+   D           +S  V PA+ +    Y+ +
Sbjct: 209 SLLGWKEYEMEVVRDKNDNCIIVCAIENFDPMGVHT----GDSITVAPAQTLTDKEYQNM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  DP + +V  +E+N 
Sbjct: 265 RDASLAVLREIGVETGGSNVQFGVDPDTGRVVVIEMNP 302



 Score = 62.4 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 34/239 (14%), Positives = 83/239 (34%), Gaps = 25/239 (10%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--FTMDSQHLISPPYV 129
           LE   +P   +   A   + D+ R + +V   G+    +               I  P V
Sbjct: 653 LEAAGVPIIGTTPDAIDRAEDRERFQHMVDKLGLKQPANATARSXEEAFAKAEAIGYPXV 712

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           ++P        + ++     +   +  +   ++   +L++ ++        V  DA  D 
Sbjct: 713 VRPSYVLGGXAMEIVYDASELENYMTHAVKVSNDSPVLLDHFL---NCAIEVDIDAVSDG 769

Query: 190 TEIAVPKSDFYSYELK-YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
            ++ +     +  +   +S  ++  + P  +P ++  E++         +G +G+   + 
Sbjct: 770 HQVVIGGIMQHIEQAGVHSGDSACALPPYSLPAEVQDEMRDQVKRMAVELGVKGL--MNV 827

Query: 249 LFDPLSRKVFWLEIN-----VQP------GMTPVSIFPEMAA-YAGYSFRE--LLLWMV 293
                  +++ +E+N       P      G    S+    A   AG S  E   +  +V
Sbjct: 828 QLAWQDGEIYVIEVNPRASRTVPFVSKCVG---TSLAQVAARCMAGISLAEQGFVEEIV 883


>gi|312622240|ref|YP_004023853.1| carbamoyl-phosphate synthase, large subunit [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312202707|gb|ADQ46034.1| carbamoyl-phosphate synthase, large subunit [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 1077

 Score = 72.8 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 27/232 (11%), Positives = 82/232 (35%), Gaps = 18/232 (7%)

Query: 68  VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTMDSQHLIS 125
           + + L    +    + + +   + D+ +   ++ +  +P  P          +     I 
Sbjct: 646 MASYLAKNGVKILGTSMESIDTAEDRDKFLNLLKNLNIPYPPGGAAYSLEDAVKVAQQIG 705

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            P +++P        + ++   + +   +  +   +    +LI++Y+ G E     + D 
Sbjct: 706 YPVLVRPSYVLGGRAMEIVYSREELEKYIKAAIEISIKHPILIDKYILGKEAEVDGISDG 765

Query: 186 S---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCR 241
               +      + ++  +S        +S  V P   +   + +++        +A+   
Sbjct: 766 EDVLIPGIMEHIERAGVHS-------GDSMAVFPPHTLSEKVKEKIIDYTIKLARALRVV 818

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           G+    F+ D     V+ +E+N +   T     P ++   G    ++   ++
Sbjct: 819 GLFNIQFVIDKDEN-VYVIEVNPRASRT----VPILSKVTGIPMIKIATKLI 865



 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 47/288 (16%), Positives = 108/288 (37%), Gaps = 37/288 (12%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFN---------- 56
           G ++E + S   G     AL++ G +V  ++ + +  +    +  D  +           
Sbjct: 21  GQAAEFDYS---GTQACRALKEEGIEVVLVNSNPATIMTDTEI-ADRVYIEPISVDYIEE 76

Query: 57  ---------VLHGNFGEDG-------LVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
                    +L G  G+             ILE   +    + +     + D+   K+ +
Sbjct: 77  IIKKERPQGLLAGLGGQTALNMAFELAEAGILEKYGVCLLGTSLETIKKAEDRELFKKTM 136

Query: 101 SSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS 158
              G PV  SI+ +  +  ++    +  P +++P       G  +   ++ +     +  
Sbjct: 137 IEIGEPVPKSIIAHSVQEAIEFAREVGYPVIVRPAYTLGGTGGGIAYNEEELRYIASKGL 196

Query: 159 SWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
             +   Q+LIEQ V G  E+   VM D++ +   I V   +     +   + +S  V P+
Sbjct: 197 KLSLIHQVLIEQSVLGWKEIEYEVMRDSNDN--CITVCNMENID-PVGIHTGDSIVVAPS 253

Query: 218 K-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +    Y+ ++  +    +++   G     F  +P + +   +E+N 
Sbjct: 254 QTLSDKEYQMLRSASLNIIRSLKIEGGCNVQFALNPNNMEYVVIEVNP 301


>gi|308752486|gb|ADO45969.1| Carbamoyl-phosphate synthase L chain ATP-binding protein
           [Hydrogenobacter thermophilus TK-6]
          Length = 476

 Score = 72.8 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 43/241 (17%), Positives = 95/241 (39%), Gaps = 21/241 (8%)

Query: 33  VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
           V  +D+ +SVG    H          +G   E+       +   I +         +  D
Sbjct: 64  VRIVDLAKSVGADAVHPG--------YGFLAENAEFARFCQKRGITFIGPKPEHIEMFGD 115

Query: 93  KMRSKQVVSSCGVPVCPSILV----NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQ 148
           K+++K+++   G+P  P +          +     I  P ++K   GG   G+ V+K ++
Sbjct: 116 KVKAKKMMKKLGIPTVPGVEEPLKDPTDALHYAKEIGFPIILKSAYGGGGRGMRVVKSEK 175

Query: 149 SIPL----DLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYE 203
            +P        ++ ++     L IE+Y++    +   ++GD   +V  +        S +
Sbjct: 176 ELPQLFESGYREAETFFGKGDLFIEKYLENPKHIEVQILGDKYGNVVHLGERD---CSIQ 232

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            K+  +      P  +P ++  ++  L+  A   +G       +FL D    + +++E+N
Sbjct: 233 RKHQKVLEVTPCPV-LPKEMRNKMLGLSVRAMMQVGYESAGTLEFLVDIKKGEFYFIEMN 291

Query: 264 V 264
            
Sbjct: 292 T 292


>gi|308270123|emb|CBX26735.1| Carbamoyl-phosphate synthase large chain [uncultured
           Desulfobacterium sp.]
          Length = 1073

 Score = 72.8 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 49/278 (17%), Positives = 102/278 (36%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G++V  +         D D              V +++    PD    
Sbjct: 29  SGTQACKALKEDGYEVVLVNSNPATIMTDPDMAHRTYIEPVTPEIVAMIIEKEHPDALLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G  G +  ++     +LE   +    + I +   + D+   ++ ++  G+ +  S +
Sbjct: 89  TLGGQTGLNTAIEVAKMGVLEKFGVEMIGASIESINKAEDRDLFRKAMNRIGLRIPESGI 148

Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                M  +    I  P +++P       G  V    + + +        +   Q+++E+
Sbjct: 149 ATNMEMAIKIVDTIGFPVIVRPSFTLGGTGGGVAYNFEDLEIIAKSGFDASLIGQIMLEE 208

Query: 171 YVDG-IELTCGVMGDA-SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            V G  E    VM D     V   ++   D           +S  V PA+ +    Y+++
Sbjct: 209 SVLGWKEYELEVMRDKNDNVVIICSIENMDPMGIHT----GDSITVAPAQTLTDAEYQKM 264

Query: 228 QRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P++  +  +E+N 
Sbjct: 265 RNASLAIMREIGVDTGGSNVQFAVNPVNGDMIVVEMNP 302



 Score = 55.1 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/217 (11%), Positives = 76/217 (35%), Gaps = 12/217 (5%)

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-SILVN-RFTMDSQHLISPPYVIKP 132
             +P   +   +   + ++   K ++   G+        +N +        I  P +++P
Sbjct: 659 AGVPIIGTQPESIDNAENRELFKVMLKKLGLVQPENGTALNIKEATIIAESIGYPVILRP 718

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTE 191
                   + ++   + +      +   +    +LI+++++  +E+    + D    +  
Sbjct: 719 SFVLGGRAMKIVYNRKDLENFTRIAIEASPVHPVLIDKFLEEAVEVDVDAISDGKATIIC 778

Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
             +   +       +S  ++  + P  I  DI  ++          +   G+   +  + 
Sbjct: 779 GIMEHIEAAGV---HSGDSACVLPPHSISKDIIDQITSATKAMATELKVIGL--MNVQYA 833

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
               K++ LE+N +   T     P ++   G  F +L
Sbjct: 834 IKGDKLYILEVNPRASRT----IPFVSKATGIPFAKL 866


>gi|193084131|gb|ACF09797.1| carbamoyl-phosphate synthase large chain [uncultured marine group
           III euryarchaeote SAT1000-53-B3]
          Length = 1062

 Score = 72.8 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 50/288 (17%), Positives = 108/288 (37%), Gaps = 37/288 (12%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI---------DVD------------RSVGLV 45
           G ++E + S   G  C SAL +AG  V  +         D +             S+  +
Sbjct: 14  GQAAEFDYS---GSQCCSALREAGHTVVLVNSNPATIQTDPETADIVYIEPMTVESLTRI 70

Query: 46  LAHLKPDLAFNVLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   KPD     + G  G +  +      +L+   +    + + +  ++ D+   ++ + 
Sbjct: 71  IEKEKPDAIIPGMGGQTGLNLTIDLHKAGVLQKHGMKILGTSLKSIEMAEDRNLFRKKMI 130

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G PV  S +      ++     +  P V++P       G  +   +  + +   +  +
Sbjct: 131 EIGEPVAESGIAQTINQSLKLAEKLDYPVVVRPAFTLGGTGGGIAYNENELEIIAGRGLT 190

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
            +   QLLIE+ + G +E    V+ D   + +   ++   D            S  V PA
Sbjct: 191 LSPVKQLLIEESILGWLEFEFEVLRDEDDNAIIVCSMENLDPMGVHT----GESIVVAPA 246

Query: 218 -KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +P   Y++++  A    +++G  G     F ++  +     +E+N 
Sbjct: 247 LTLPDTAYQKLRTSALKVVRSLGIVGGCNVQFAYNSKTEDYILIEVNP 294



 Score = 63.6 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 44/270 (16%), Positives = 95/270 (35%), Gaps = 35/270 (12%)

Query: 24  SALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHG--NFG----EDGLV 68
            A+  AG++   +         D D S  L    L  +  F +L     +G      G  
Sbjct: 574 QAVRKAGYEAVVVNNNPETVSTDFDASDRLYFEPLDAESVFEILDAEKPYGIILQLGGQT 633

Query: 69  QAIL----------ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT- 117
              L          E L+     + +     + D+ +  +++   G+ +    +      
Sbjct: 634 AVNLASEVEAHIKKEKLKTRILGTKVRDMDAAEDRGKCGELMRKAGIKMPKWAIAKSSDE 693

Query: 118 -MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-I 175
            +     I  P +++P       G+ ++  D+ +   L   S       +L++++++G I
Sbjct: 694 VITRAEEIGFPVLVRPSFVLGGRGMEIVHNDKQLKKYLRLESHATPKRPVLVDKFLEGAI 753

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLA 234
           EL   ++ D    V    + + +           +S  V+P + I   +  EV +++   
Sbjct: 754 ELDVDLISDGKKVVIGAIMEQIEMAGVHS----GDSACVMPPQSISKKLEDEVIKISKKV 809

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +   G +  +         VF LEIN 
Sbjct: 810 AKKMKIIGAA--NLQLAIKDSNVFLLEINP 837


>gi|313199800|ref|YP_004038458.1| acetyl-CoA carboxylase, biotin carboxylase [Methylovorus sp. MP688]
 gi|312439116|gb|ADQ83222.1| acetyl-CoA carboxylase, biotin carboxylase [Methylovorus sp. MP688]
          Length = 449

 Score = 72.8 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 33/221 (14%), Positives = 77/221 (34%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H  +G   E+      +E     +         L  DK+ +K  + + GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAERVEQSGFVFIGPRAETIRLMGDKVSAKDAMKAAGVPCVPGSEG 136

Query: 113 ----VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
                    + +   I  P +IK   GG   G+ V+  + ++   +     ++ +     
Sbjct: 137 ALPDDPDAILRAAKEIGYPVIIKAAGGGGGRGMRVVHTEAALLNSVSMTKAEAGAAFGNP 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            + +E++++    +   V+ D   +   +            K             I   +
Sbjct: 197 TVYMEKFLEQPRHIEIQVLSDEHGNAVYLGERDCSMQRRHQKVL----EEAPAPGITQKM 252

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +++      A + I  RG    +FL+   + + +++E+N 
Sbjct: 253 REKIGERCADACRRINYRGAGTFEFLY--ENGEFYFIEMNT 291


>gi|289749500|ref|ZP_06508878.1| acyl-CoA dehydrogenase fadE12 [Mycobacterium tuberculosis T92]
 gi|289690087|gb|EFD57516.1| acyl-CoA dehydrogenase fadE12 [Mycobacterium tuberculosis T92]
          Length = 1589

 Score = 72.8 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 41/217 (18%), Positives = 82/217 (37%), Gaps = 21/217 (9%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
           +G   E+    A ++   + +    + A      K+ SK+++++ GVPV     +     
Sbjct: 614 YGFLSENAEFAAAVQEAGLTWVGPPVDAVRAMGSKIESKKLMAAAGVPV-----LEELDP 668

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQLLIEQYV-D 173
           D+      P ++K   GG   G+ V+ +  ++P ++  +            +  E+Y+  
Sbjct: 669 DAVTTAQLPVLVKASAGGGGRGMRVVHELSALPAEVEAARREAQSAFGDPTVFCERYLPT 728

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI---YKEVQRL 230
           G  +   VM D    V  +   +        K          P+ +   +     ++   
Sbjct: 729 GHHVEVQVMADTHGTVWAVGERECSIQRRHQK-----IIEEAPSPLVERVPGMRAKLFDA 783

Query: 231 AFLAHQAIGCRGISRSDFLFDPL---SRKVFWLEINV 264
           A LA  AIG  G    +FL D       + ++LE+N 
Sbjct: 784 ARLAASAIGYTGAGTVEFLADDSPGREGEFYFLEMNT 820


>gi|167628414|ref|YP_001678913.1| acetyl-CoA carboxylase, biotin carboxylase [Heliobacterium
           modesticaldum Ice1]
 gi|167591154|gb|ABZ82902.1| acetyl-CoA carboxylase, biotin carboxylase [Heliobacterium
           modesticaldum Ice1]
          Length = 454

 Score = 72.8 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 75/220 (34%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  FG   E+     I E  +I +   G  A      K  +++ +   GV V P    
Sbjct: 83  AIHPGFGFLSENAYFAEICETCKIKFIGPGSKAIESMGSKAVARETMIKAGVRVVPGSES 142

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
            +            I  P +IK   GG   G+ +   ++ +   L  + +          
Sbjct: 143 IVTSEEEAEKIAEEIGYPVMIKASAGGGGRGMRIAHSEKDLFNALQTAQAEAEAAFGNKA 202

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE++++    +   +M D   +   +            K             +  ++ 
Sbjct: 203 VYIEKFIEEPRHIEFQIMADQFGNTVYLGERDCSIQRRNQKLL----EEAPSPALSPELR 258

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           KE+   A LA +++        +FL D      +++E+N 
Sbjct: 259 KEMGEQAVLAAKSVNYVNAGTVEFLLDKH-GHYYFIEMNT 297


>gi|327267929|ref|XP_003218751.1| PREDICTED: propionyl-CoA carboxylase alpha chain,
           mitochondrial-like [Anolis carolinensis]
          Length = 709

 Score = 72.8 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 41/221 (18%), Positives = 76/221 (34%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      LE  +I +    + A     DK+ SK +  +  V   P    
Sbjct: 119 AVHPGYGFLSENKEFSKRLESEDIAFIGPDMHAIQAMGDKIESKILAKNAKVNTIPGYDG 178

Query: 112 LVNRFTMDS--QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGD 164
           +V            I  P +IK   GG   G+ +   D+             +SS+   D
Sbjct: 179 VVKDADEAVRIAREIGYPVMIKASAGGGGKGMRIAWDDEETREGFRFSSQEAASSFG-DD 237

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           +LLIE+++D    +   V+ D   +   +   +        K             +  + 
Sbjct: 238 RLLIEKFIDNPRHIEIQVLADKHGNALWLNERECSIQRRNQK----VIEEAPSTFLDPET 293

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +   A    +A+        +FL D      ++LE+N 
Sbjct: 294 RRAMGEQAVALAKAVKYSSAGTVEFLVDSKKN-FYFLEMNT 333


>gi|269303057|gb|ACZ33157.1| acetyl-CoA carboxylase, biotin carboxylase [Chlamydophila
           pneumoniae LPCoLN]
          Length = 454

 Score = 72.8 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 84/220 (38%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---S 110
            +H  +G   E+    +I E   + +      + A+  DK+ +K +      PV P    
Sbjct: 76  AVHPGYGFLSENANFASICESCGLTFIGPSSESIAMMGDKIAAKSLAKKIKCPVIPGSEG 135

Query: 111 ILVNRFT-MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSWNHGDQ 165
           I+ +    +     I  P VIK + GG   GI ++K+             ++ +  +   
Sbjct: 136 IIEDESEGLKIAEKIGFPIVIKAVAGGGGRGIRIVKEKDEFYRAFSAARAEAEAGFNNPN 195

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE++++    L   V+GD   +   +            K             +  +I 
Sbjct: 196 VYIEKFIENPRHLEIQVIGDTHGNYVHLGERDCTIQRRRQK----LIEETPSPILNAEIR 251

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +V ++A    ++ G   +   +FL D   +K +++E+N 
Sbjct: 252 AKVGKVAVDLARSAGYFSVGTVEFLLDK-DKKFYFMEMNT 290


>gi|268611000|ref|ZP_06144727.1| urea carboxylase [Ruminococcus flavefaciens FD-1]
          Length = 990

 Score = 72.8 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 38/257 (14%), Positives = 92/257 (35%), Gaps = 32/257 (12%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       +   I +         L   K  ++++    GVP+     +
Sbjct: 77  AVHPGYGFLSENTDFAQKCKENGIVFIGPAPEQIKLFGLKHSARELAEKAGVPLLSGSGL 136

Query: 114 NRFTMDS---QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQL 166
              + D+      I  P ++K   GG  +GI + +  + +          + +  +   +
Sbjct: 137 LENSADALKEAERIGYPVMLKSTAGGGGIGIRICENAEELEDSFDNVRHLAENNFNDGGV 196

Query: 167 LIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIY 224
            +E+Y+     +   + G+   +   I           ++  +       PA  +   + 
Sbjct: 197 FVEKYIKIARHVEVQIFGNEYGETAVIGE-----RDCSVQRRNQKVVEECPAPCLSESVR 251

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
           +++ R A    +  G R     +FL+D    K ++LE+N             +    G +
Sbjct: 252 QDMFRAAKSLAKTSGYRNAGTVEFLYDASCEKFYFLEVNT-----------RLQVEHGIT 300

Query: 285 ---FR-ELLLWMVEDAS 297
              +  +L+  M+++A+
Sbjct: 301 EEVYGVDLVEMMIKEAA 317


>gi|253576313|ref|ZP_04853643.1| acetyl-CoA carboxylase, biotin carboxylase [Paenibacillus sp. oral
           taxon 786 str. D14]
 gi|251844206|gb|EES72224.1| acetyl-CoA carboxylase, biotin carboxylase [Paenibacillus sp. oral
           taxon 786 str. D14]
          Length = 447

 Score = 72.8 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 77/221 (34%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     I     I +      A     DK  +KQ +    VPV P    
Sbjct: 78  AIHPGYGFLAENADFAEICGSCNITFIGPSPEAITRMGDKAMAKQTMKEANVPVIPGSDG 137

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS-----SSWNHGD 164
            I      +     I  P +IK   GG   GI + + ++S+   +  +      ++ +  
Sbjct: 138 LIEDLEEAVMVARDIGYPVIIKATAGGGGKGIRIAEDEESLIKQITTAQQEAQKAFGNAG 197

Query: 165 QLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            + +E+Y+ G   +   ++ D   +   +            K             +  + 
Sbjct: 198 -VYLEKYLTGMKHVEIQIIADKHGNAVYLGERDCSVQRRRQKLL----EEAPCPVLSPEK 252

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +E+   A  A  A+   G    +FL  P   + +++E+N 
Sbjct: 253 RQEMGEAAVRAALAVNYSGAGTLEFLLGP-DGQFYFMEMNT 292


>gi|145251636|ref|XP_001397331.1| hypothetical protein ANI_1_1300144 [Aspergillus niger CBS 513.88]
 gi|134082867|emb|CAK42697.1| unnamed protein product [Aspergillus niger]
          Length = 376

 Score = 72.8 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 45/225 (20%), Positives = 79/225 (35%), Gaps = 22/225 (9%)

Query: 92  DKMRSKQVVSSCGVPVCPSILV---NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQ 148
           DK      +   G    PS  +     F+     + S P V KP++G  S G+ V     
Sbjct: 141 DKAYLNDKLRELGRYTLPSSWLVSPKDFSEVINKINSYPIVGKPIRGRGSHGVKVCHDKT 200

Query: 149 SIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM---GDASLDVTEIAVPKSDFYSYELK 205
            +   +      +    +++E ++ G E T  VM    D     + + V + +       
Sbjct: 201 QLQQHIQTLL--HESPLVMLEGFLAGEEATITVMPPTRDRPQHWSMLPVTRFNHAEGIAP 258

Query: 206 YS-----SLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260
           Y+     + NS  + P ++    Y +V R        IG     R D             
Sbjct: 259 YNGVVAVTANSRAISPNELKDPAYGKVMRECESVAALIGATAPIRVDVRRFAEGSDFALF 318

Query: 261 EINVQPGMT---------PVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +IN++P MT           S+    A+  G+ +  LL  ++  A
Sbjct: 319 DINMKPNMTGPGRPGRQDQASLTAIAASAMGWDYSTLLQNILMGA 363


>gi|170724282|ref|YP_001751970.1| pyruvate carboxylase subunit A [Pseudomonas putida W619]
 gi|169762285|gb|ACA75601.1| acetyl-CoA carboxylase, biotin carboxylase [Pseudomonas putida
           W619]
          Length = 471

 Score = 72.8 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 76/221 (34%), Gaps = 20/221 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            LH  +G   E+  +  I     I +            DK  +++ +   GVPV P    
Sbjct: 76  ALHPGYGFLSENAELAEICAERGIKFIGPAAEVIRRMGDKTEARRTMIQAGVPVTPGTEG 135

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGD 164
            +      +     I  P ++K   GG   GI      + +  +        + ++   +
Sbjct: 136 NVADIHEALSEGERIGYPVMLKATSGGGGRGIRRCNSREELEQNFPRVISEATKAFGSAE 195

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDI 223
             L +  V+   +   ++GD+  +V  +            K        + P  ++  + 
Sbjct: 196 VFLEKCIVNPKHIEAQILGDSFGNVVHLFERDCSIQRRNQKL-----IEIAPSPQLTPEQ 250

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              +  LA  A +A+        +FL      +V+++E+N 
Sbjct: 251 RAYIGDLAVRAAKAVNYENAGTVEFLL--ADGEVYFMEMNT 289


>gi|323450616|gb|EGB06496.1| hypothetical protein AURANDRAFT_65502 [Aureococcus anophagefferens]
          Length = 1200

 Score = 72.8 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 43/232 (18%), Positives = 84/232 (36%), Gaps = 33/232 (14%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H  +G   E+     + E   I +            DK  ++Q+    GVPV P    
Sbjct: 109 AIHPGYGFLSENVHFARLCEANGIAFVGPESSVLNKFGDKTLARQLAVDTGVPVVPGTPG 168

Query: 113 -------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS-----SSW 160
                  V  F       +  P ++K   GG   G+ V++    +  +L ++     S++
Sbjct: 169 ECNTLEEVRAFVEGGDDPVGYPVIVKAAHGGGGRGMRVVRDASELEENLARAQSEALSAF 228

Query: 161 NHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AK 218
                + +E+YVD    +   ++ D    V              ++        + P   
Sbjct: 229 G-NAAVFVERYVDSPRHVEVQILSDGESTV------HLYDRDCSVQRRFQKVVEIAPSVG 281

Query: 219 IPLDIYKEVQRLAFLA-----HQ-AIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +P D+   +   A        ++ A+ C G    +FL DP + K +++E+N 
Sbjct: 282 LPDDLRAALLADAVRLTSAAGYRCALCCAGT--VEFLVDPATWKHYFIEVNP 331


>gi|299745259|ref|XP_001831593.2| pyruvate carboxylase [Coprinopsis cinerea okayama7#130]
 gi|298406506|gb|EAU90126.2| pyruvate carboxylase [Coprinopsis cinerea okayama7#130]
          Length = 1149

 Score = 72.8 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 82/221 (37%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
           ++H  +G   E+      +E   I +            DK +++ + +  GVPV P    
Sbjct: 73  MIHPGYGFLSENAEFARKVEQAGIAFVGPAPEVIDELGDKTKARTLATRVGVPVVPGTPG 132

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
            +               P +IK   GG   G+ V+++             ++ +      
Sbjct: 133 PVASYSEGEAFIKEYGFPVIIKAAMGGGGRGMRVVREQSDFKAAFERAVSEAKAAFGDGT 192

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDI 223
           + IE++++    +   ++ DA  +               ++        V PA  +P ++
Sbjct: 193 VFIERFLERPRHIEVQILADAVGNTI-----HLFERDCSVQRRHQKVVEVAPATHLPEEV 247

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +   A    +++G R    ++FL D + R  +++EIN 
Sbjct: 248 RQAILSDAIKLAKSVGYRNAGTAEFLVDQMGRH-YFIEINP 287


>gi|146340230|ref|YP_001205278.1| putative acyl-CoA carboxylase biotin-carrying subunit/subunit alpha
           [Bradyrhizobium sp. ORS278]
 gi|146193036|emb|CAL77046.1| putative acyl-CoA carboxylase biotin-carrying subunit; alpha chain
           [Bradyrhizobium sp. ORS278]
          Length = 687

 Score = 72.8 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 76/220 (34%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H  +G   E       L+   I +      A A   DK+ SK+  +   V   P  L 
Sbjct: 93  AVHPGYGFLSEREAFPRALQENGIVFIGPNPGAIAAMGDKIESKKAAAKAKVSTVPGFLG 152

Query: 113 ---VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSWNHGDQ 165
               ++  +     I  P +IK   GG   G+ +      +     L   ++ +    D+
Sbjct: 153 VIEDDKHAVRIADDIGYPVMIKASAGGGGKGMRIAHSTAEVAEGFNLAKAEAKASFGDDR 212

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+++ D   +   V+GD   +V  +   +        K             +  +  
Sbjct: 213 VFIEKFITDPRHIEIQVLGDKHGNVIYLGERECSIQRRNQK----VIEEAPSPLLDEETR 268

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +E+   A    +A+        +F      +  ++LE+N 
Sbjct: 269 REMGEQAVALAKAVNYDSAGTVEF-VAGQDKSFYFLEMNT 307


>gi|288818899|ref|YP_003433247.1| pyruvate carboxylase small subunit [Hydrogenobacter thermophilus
           TK-6]
 gi|116234998|dbj|BAF34937.1| pyruvate carboxylase small subunit [Hydrogenobacter thermophilus]
 gi|288788299|dbj|BAI70046.1| pyruvate carboxylase small subunit [Hydrogenobacter thermophilus
           TK-6]
          Length = 475

 Score = 72.8 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 43/241 (17%), Positives = 95/241 (39%), Gaps = 21/241 (8%)

Query: 33  VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
           V  +D+ +SVG    H          +G   E+       +   I +         +  D
Sbjct: 63  VRIVDLAKSVGADAVHPG--------YGFLAENAEFARFCQKRGITFIGPKPEHIEMFGD 114

Query: 93  KMRSKQVVSSCGVPVCPSILV----NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQ 148
           K+++K+++   G+P  P +          +     I  P ++K   GG   G+ V+K ++
Sbjct: 115 KVKAKKMMKKLGIPTVPGVEEPLKDPTDALHYAKEIGFPIILKSAYGGGGRGMRVVKSEK 174

Query: 149 SIPL----DLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYE 203
            +P        ++ ++     L IE+Y++    +   ++GD   +V  +        S +
Sbjct: 175 ELPQLFESGYREAETFFGKGDLFIEKYLENPKHIEVQILGDKYGNVVHLGERD---CSIQ 231

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            K+  +      P  +P ++  ++  L+  A   +G       +FL D    + +++E+N
Sbjct: 232 RKHQKVLEVTPCPV-LPKEMRNKMLGLSVRAMMQVGYESAGTLEFLVDIKKGEFYFIEMN 290

Query: 264 V 264
            
Sbjct: 291 T 291


>gi|84516746|ref|ZP_01004104.1| Methylcrotonyl-CoA carboxylase alpha chain [Loktanella
           vestfoldensis SKA53]
 gi|84509214|gb|EAQ05673.1| Methylcrotonyl-CoA carboxylase alpha chain [Loktanella
           vestfoldensis SKA53]
          Length = 636

 Score = 72.8 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 37/204 (18%), Positives = 67/204 (32%), Gaps = 20/204 (9%)

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT----MDSQHLISPPYVI 130
             + +      A      K  +K ++   GVPV P                  I  P +I
Sbjct: 98  AGLVFIGPSAQAIRAMGLKDAAKALMVKAGVPVVPGYHGADQDGAFLAREAAKIGYPVLI 157

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQLLIEQYV-DGIELTCGVMGDA 185
           K + GG   G+ ++         L  + +          +LIE+Y+     +   V GD 
Sbjct: 158 KAVAGGGGKGMRLVDGPAQFAEHLASAQAEARNAFGNPAVLIEKYITTPRHIEVQVFGDG 217

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGIS 244
           +  V              L+          PA  + + +   + + A  A +AIG  G  
Sbjct: 218 TDAV------HLFERDCSLQRRHQKVIEEAPAPGMTVALRDAMGQAAVTAAKAIGYAGAG 271

Query: 245 RSDFLFDPLSR----KVFWLEINV 264
             +F+ D          +++E+N 
Sbjct: 272 TVEFIVDGAGGLRPDGFWFMEMNT 295


>gi|15600629|ref|NP_254123.1| acetyl-CoA carboxylase subunit A [Pseudomonas aeruginosa PAO1]
 gi|107104538|ref|ZP_01368456.1| hypothetical protein PaerPA_01005616 [Pseudomonas aeruginosa PACS2]
 gi|116053584|ref|YP_793911.1| acetyl-CoA carboxylase subunit A [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|218894539|ref|YP_002443409.1| acetyl-CoA carboxylase subunit A [Pseudomonas aeruginosa LESB58]
 gi|254237879|ref|ZP_04931202.1| hypothetical protein PACG_03981 [Pseudomonas aeruginosa C3719]
 gi|254242988|ref|ZP_04936310.1| hypothetical protein PA2G_03775 [Pseudomonas aeruginosa 2192]
 gi|313111628|ref|ZP_07797426.1| putative biotin carboxylase subunit of a transcarboxylase
           [Pseudomonas aeruginosa 39016]
 gi|9951765|gb|AAG08821.1|AE004956_5 probable biotin carboxylase subunit of a transcarboxylase
           [Pseudomonas aeruginosa PAO1]
 gi|115588805|gb|ABJ14820.1| putative biotin carboxylase subunit of a transcarboxylase
           [Pseudomonas aeruginosa UCBPP-PA14]
 gi|126169810|gb|EAZ55321.1| hypothetical protein PACG_03981 [Pseudomonas aeruginosa C3719]
 gi|126196366|gb|EAZ60429.1| hypothetical protein PA2G_03775 [Pseudomonas aeruginosa 2192]
 gi|218774768|emb|CAW30585.1| probable biotin carboxylase subunit of a transcarboxylase
           [Pseudomonas aeruginosa LESB58]
 gi|310883928|gb|EFQ42522.1| putative biotin carboxylase subunit of a transcarboxylase
           [Pseudomonas aeruginosa 39016]
          Length = 471

 Score = 72.8 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 33/221 (14%), Positives = 74/221 (33%), Gaps = 20/221 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            LH  +G   E+  +  I     I +            DK  +++ + + GVP  P    
Sbjct: 76  ALHPGYGFLSENAELAEICAERGIKFIGPSAQVIRRMGDKTEARRSMIAAGVPCTPGTEG 135

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGD 164
            +      +     I  P ++K   GG   GI      + +           + ++   +
Sbjct: 136 NVADLAEALREAERIGYPVMLKATSGGGGRGIRRCNSREELEQAFPRVISEATKAFGSAE 195

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDI 223
             L +  V+   +   ++ D     +             ++  +     + P  ++  + 
Sbjct: 196 VFLEKCIVNPKHIEAQILAD-----SFGNTVHLFERDCSIQRRNQKLIEIAPSPQLTPEQ 250

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              +  LA  A +A+G       +FL      +V+++E+N 
Sbjct: 251 RAYIGDLAVRAAKAVGYENAGTVEFLL--ADGEVYFMEMNT 289


>gi|300703810|ref|YP_003745412.1| carbamoyl-phosphate synthase large chain (carbamoyl-phosphate
           synthetase ammonia chain) [Ralstonia solanacearum
           CFBP2957]
 gi|299071473|emb|CBJ42793.1| Carbamoyl-phosphate synthase large chain (Carbamoyl-phosphate
           synthetase ammonia chain) [Ralstonia solanacearum
           CFBP2957]
          Length = 1081

 Score = 72.8 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 31/222 (13%), Positives = 82/222 (36%), Gaps = 12/222 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQHLISPPYV 129
           LE   +P   +       + D+ R ++++   G+   P+         +     I  P V
Sbjct: 658 LEANGVPIIGTTPDMIDAAEDRERFQKLLHELGLRQPPNRTARAEDEALKLAEEIGYPLV 717

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++ + + +   + ++   ++   +L+++++ D IE     + D    
Sbjct: 718 VRPSYVLGGRAMEIVHEPRDLERYMREAVKVSNDSPVLLDRFLNDAIECDVDCLSDGKRV 777

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                +   +       +S  ++  + P  +      E++R      +A+   G+    F
Sbjct: 778 FIGGVMEHIEQAGV---HSGDSACSLPPYSLSQATVDELKRQTAAMARALNVVGLMNVQF 834

Query: 249 LFDPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
                  +  V+ LE+N +   T     P ++   G S  ++
Sbjct: 835 AIQQKGGEDIVYVLEVNPRASRT----VPYVSKATGISLAKV 872



 Score = 60.1 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 49/285 (17%), Positives = 95/285 (33%), Gaps = 42/285 (14%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + GFKV  +              DV          V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGFKVVLVNSNPATIMTDPSTADVTYIEPITWEVVERIIAKERPDAILP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G    +  +      +L+   +    +   A   + D+ + K  ++  G+    S  
Sbjct: 89  TMGGQTALNCALDLHRHGVLQKYNVELIGASPEAIDKAEDRQKFKDAMTKIGLGSAKSGI 148

Query: 111 -------ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
                  + V             P VI+P       G  +    +       +    +  
Sbjct: 149 AHSLEEALAVQAQIARETGTSGYPIVIRPSFTLGGTGGGIAYNREEFEDICKRGLDLSPT 208

Query: 164 DQLLIEQYVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IP 220
           ++LLIE+ + G  E    V+ D   + +   ++   D           +S  V PA+ + 
Sbjct: 209 NELLIEESLLGWKEYEMEVVRDKKDNCIIVCSIENLDPMGIHT----GDSITVAPAQTLT 264

Query: 221 LDIYKEVQRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
              Y+ ++  +    + IG   G S   F  +P   ++  +E+N 
Sbjct: 265 DKEYQILRNASLAVLREIGVDTGGSNVQFSINPQDGRMIVIEMNP 309


>gi|296188907|ref|XP_002742550.1| PREDICTED: propionyl-CoA carboxylase alpha chain, mitochondrial
           isoform 1 [Callithrix jacchus]
          Length = 728

 Score = 72.8 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 74/220 (33%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      L    + +      A     DK+ SK +     V   P    
Sbjct: 138 AVHPGYGFLSENKEFARCLAAEGVIFIGPDTHAIQAMGDKIESKLLAKKAKVNTIPGFDG 197

Query: 112 LVNRFTMDS--QHLISPPYVIKPLKGGSSLGIIVIKKDQS----IPLDLLQSSSWNHGDQ 165
           +V            I  P +IK   GG   G+ +   D+       L   +++S    D+
Sbjct: 198 VVKDAEEAVRIAREIGYPVMIKASAGGGGKGMRIAWDDEETRDGFRLSSQEAASSFGDDR 257

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           LLIE+++D    +   V+GD   +   +   +        K             +  +  
Sbjct: 258 LLIEKFIDNPRHIEIQVLGDKHGNALWLNERECSIQRRNQK----VVEEAPSIFLDAETR 313

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +   A    +A+        +FL D      ++LE+N 
Sbjct: 314 RAMGEQAVALAKAVKYSSAGTIEFLVDSKKN-FYFLEMNT 352


>gi|240143309|ref|ZP_04741910.1| carbamoyl-phosphate synthase, large subunit [Roseburia intestinalis
           L1-82]
 gi|257204679|gb|EEV02964.1| carbamoyl-phosphate synthase, large subunit [Roseburia intestinalis
           L1-82]
          Length = 1068

 Score = 72.8 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 35/225 (15%), Positives = 82/225 (36%), Gaps = 13/225 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTMDSQHLISPPYV 129
           L  + +    +       + D+    +++    +P      +       +  + +  P +
Sbjct: 647 LMKMGVKILGTKAEDVDAAEDRELFDEILEKTQIPRAAGGTVYTAEEAKEVANRLGYPVL 706

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           ++P       G+ +   D  I   +   +       +L+++Y+ G E+      DA  D 
Sbjct: 707 VRPSYVLGGQGMKIAFNDDEIEEFIGIINRIAQDHPILVDKYLQGKEIEV----DAVCDG 762

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           T+I +P    +       S +S  V PA  I   + + +        QA+   G+    F
Sbjct: 763 TDILIPGIMEHIERTGVHSGDSISVYPAPTISDHVKETIVEYTKRLAQALHVIGLINIQF 822

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +   +  +V+ +E+N +   T     P ++   G    +L   ++
Sbjct: 823 I--AMDEQVYVIEVNPRSSRT----VPYISKVTGIPIVDLATKVI 861



 Score = 60.1 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 46/286 (16%), Positives = 100/286 (34%), Gaps = 33/286 (11%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQID-------VDRSVGLV-------------- 45
           G ++E + +   G     +L++ G +V  ++        D+ +                 
Sbjct: 21  GQAAEFDYA---GTQACRSLKEEGVEVVLVNSNPATIMTDKDIADQVYIEPLTVSVLEKI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +A  KPD     L G  G +  ++     ILE   +    +       + D+   K  + 
Sbjct: 78  IAKEKPDSVLPTLGGQAGLNLGMELEEKGILEKYNVRLIGTTAETIFKAEDRQAFKDTME 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G P   S +V+  +  +   + I  P V++P       G  +   +  +   L     
Sbjct: 138 KIGEPCAASQVVHNVQDGIKFTNTIGYPVVLRPAYTLGGSGGGIAHNETELVEILTNGLR 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   ++L+E+ + G  E+   VM DA+ +   I V   +       ++  +        
Sbjct: 198 LSRVGEVLVERCIAGWKEIEYEVMRDANGN--CITVCNMENIDPVGVHTGDSIVVAPSQT 255

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +    Y+ ++  A      +   G     +  +P S +   +E+N 
Sbjct: 256 LGDKEYQMLRTSALNIISELNITGGCNVQYALNPDSFEYCVIEVNP 301


>gi|283783818|ref|YP_003363683.1| carbamoyl-phosphate synthase large chain [Citrobacter rodentium
           ICC168]
 gi|282947272|emb|CBG86817.1| carbamoyl-phosphate synthase large chain [Citrobacter rodentium
           ICC168]
          Length = 1074

 Score = 72.8 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 97/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D +              V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +    Q +LE   +    +   A   + D+ R    +   G+    S +
Sbjct: 89  TMGGQTALNCALELERQGVLEEFGVTMIGATAYAIDKAEDRRRFDIAMKKIGLETARSGI 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     +     +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHTMEEALAVAADVGYPCIIRPSFTMGGTGGGIAYNREEFEEICARGLDLSPTKELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + +   +   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIEN----FDAMGIHTGDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RNASMAVLREIGVETGGSNVQFAVNPKNGRLIVIEMNP 302



 Score = 60.9 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/197 (15%), Positives = 75/197 (38%), Gaps = 10/197 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           LE   +P   +   A   + D+ R +  V    +    +  V      ++    IS P V
Sbjct: 654 LEAAGVPVIGTSPDAIDRAEDRERFQHAVDRLKLKQPANATVTTIEQAVEKAKEISYPLV 713

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  +  +      + S ++   +L+++++ D +E+    + D  + 
Sbjct: 714 VRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDRFLDDAVEVDVDAICDGEMV 773

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           +    +   +    +    S +S   LPA  +  +I   +++        +  RG+    
Sbjct: 774 LIGGIMEHIE----QAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRGLMNVQ 829

Query: 248 FLFDPLSRKVFWLEINV 264
           F       +V+ +E+N 
Sbjct: 830 FAV--KDNEVYLIEVNP 844


>gi|152989073|ref|YP_001351535.1| acetyl-CoA carboxylase subunit A [Pseudomonas aeruginosa PA7]
 gi|150964231|gb|ABR86256.1| acetyl-CoA carboxylase, biotin carboxylase [Pseudomonas aeruginosa
           PA7]
          Length = 471

 Score = 72.8 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 33/221 (14%), Positives = 74/221 (33%), Gaps = 20/221 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            LH  +G   E+  +  I     I +            DK  +++ + + GVP  P    
Sbjct: 76  ALHPGYGFLSENAELAEICAERGIKFIGPSAQVIRRMGDKTEARRSMIAAGVPCTPGTEG 135

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGD 164
            +      +     I  P ++K   GG   GI      + +           + ++   +
Sbjct: 136 NVADLAEALREAERIGYPVMLKATSGGGGRGIRRCNSREELEQAFPRVISEATKAFGSAE 195

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDI 223
             L +  V+   +   ++ D     +             ++  +     + P  ++  + 
Sbjct: 196 VFLEKCIVNPKHIEAQILAD-----SFGNTVHLFERDCSIQRRNQKLIEIAPSPQLTPEQ 250

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              +  LA  A +A+G       +FL      +V+++E+N 
Sbjct: 251 RAYIGDLAVRAAKAVGYENAGTVEFLL--ADGEVYFMEMNT 289


>gi|332288950|ref|YP_004419802.1| carbamoyl phosphate synthase large subunit [Gallibacterium anatis
           UMN179]
 gi|330431846|gb|AEC16905.1| carbamoyl phosphate synthase large subunit [Gallibacterium anatis
           UMN179]
          Length = 1062

 Score = 72.8 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 52/278 (18%), Positives = 103/278 (37%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +              DV        ++V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYKVILVNSNPATIMTDPNMADVTYIEPIRWQTVEQIIAKERPDAILP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      IL+   +    +   A   + D+ R K+ ++  G+    S +
Sbjct: 89  TMGGQTALNCALDLSKNGILQKYNVELIGATEDAIDKAEDRGRFKEAMAKIGLHTPKSFV 148

Query: 113 VNRF--TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            + F     +Q  +  P +I+P       G  +    +       +    +   +LLIEQ
Sbjct: 149 CHTFAEAWQAQEQVGFPTLIRPSFTMGGSGGGIAYNREEFQAICERGFDASPTHELLIEQ 208

Query: 171 YVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            V G  E    V+ D + + +   ++   D           +S  V PA+ +    Y+ +
Sbjct: 209 SVLGWKEYEMEVVRDKADNCIIVCSIENLDPMGVHT----GDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RNASLAVLREIGVDTGGSNVQFAINPENGEMIVIEMNP 302



 Score = 54.4 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 42/266 (15%), Positives = 93/266 (34%), Gaps = 35/266 (13%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGED--GLV----- 68
           AL ++GF+   +         D D S  L    L  +    ++H    E+  G++     
Sbjct: 582 ALRESGFETIMVNCNPETVSTDFDTSDRLYFEPLTLEDVLEIIHI---ENPYGVIVHYGG 638

Query: 69  QAILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-- 120
           Q  L+L        +    +   +   + D+ R +Q+++   +    +            
Sbjct: 639 QTPLKLANKLQENGVNIIGTSADSIDAAEDRQRFQQILNDLKLKQPSNRTAKNAEEAVKL 698

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTC 179
              +  P V++P        + ++     +   + ++   +    +L++ ++D  IE+  
Sbjct: 699 ADEVGYPLVVRPSYVLGGRAMQIVYNVDELNKYMREAVQVSEDSPILLDHFLDNAIEVDV 758

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAI 238
             + D    V    +   +    +    S +S   LPA  +   I  E++R       A+
Sbjct: 759 DCICDGKQVVIGGIMQHVE----QAGIHSGDSACSLPAYSLSQQIQDEIRRQTTEMAFAL 814

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINV 264
              G+    F        V+ LE+N 
Sbjct: 815 KVVGLMNVQFAV--KGDTVYVLEVNP 838


>gi|317403174|gb|EFV83698.1| biotin carboxylase [Achromobacter xylosoxidans C54]
          Length = 462

 Score = 72.8 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 80/221 (36%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLV-QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            +H  +G   E+    QA+ +   + +            DK  ++    + GVP  P   
Sbjct: 87  AIHPGYGFLAENADFSQAVTD-AGLLFVGPDAHTIRSMGDKAAARACAKAAGVPTVPGSE 145

Query: 111 --ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
             +      +     I  P +IK   GG   GI V   +  +   +     ++ +     
Sbjct: 146 GVVGSLDEALSHAAQIGYPLMIKASAGGGGRGIRVAADEAQLREAIPMAQAEARAAFGDG 205

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            + +E+Y+     +   V+GD    V           S + +   +      PA +   +
Sbjct: 206 GVYLERYLPRARHIEVQVLGDGERAVHLFE----RECSLQRRRQKVFEEAPSPA-LSPAL 260

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +   A    +++G RG    ++L+D    + +++E+N 
Sbjct: 261 RQALCESALRLTESVGYRGAGTLEYLYDETRGEFYFIEMNT 301


>gi|313680221|ref|YP_004057960.1| carbamoyl-phosphate synthase large subunit [Oceanithermus profundus
           DSM 14977]
 gi|313152936|gb|ADR36787.1| carbamoyl-phosphate synthase large subunit [Oceanithermus profundus
           DSM 14977]
          Length = 1024

 Score = 72.8 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 37/229 (16%), Positives = 84/229 (36%), Gaps = 11/229 (4%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
             V  +L   +PD     L G       +   LE    P   +   +   + D+    ++
Sbjct: 622 EDVLEILERERPDGVIVQLGGQTPL--KLARALEEAGQPIWGTSPASIHAAEDREAFNRL 679

Query: 100 VSSCGVPVCPSILV--NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
            +  G+P     +       ++    +  P +++P        + V+K +  +   L Q 
Sbjct: 680 AAELGIPQPAGAVAADEPEALEHARRLGYPLMVRPSYVLGGRAMQVVKNEDELKAYLSQV 739

Query: 158 SS-WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215
            +       +L++ Y+DG IE+    + D    V    +   +       +S  ++T + 
Sbjct: 740 YAELAARPTILLDAYLDGAIEIDVDALADGERVVVAGVMEHVERAGV---HSGDSATVLP 796

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           P  +P +  + V+       +A+  +G+   +  +     +V+ LE N 
Sbjct: 797 PVTLPAEAVETVRDYTRKLARALEVKGL--LNVQYAYKDGQVYVLEANP 843



 Score = 69.0 bits (168), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 50/289 (17%), Positives = 105/289 (36%), Gaps = 38/289 (13%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQIDVDRS---------------------VGLV 45
           G ++E + S   G     AL   G++V  ++ + +                     +  +
Sbjct: 21  GQAAEFDYS---GTQAVKALRREGYRVVLVNSNPATIMTDPRLADATYIEPLRLDFLEKI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +A  +PD     L G    +  ++     +LE   +    +   A     D+ + +  + 
Sbjct: 78  IARERPDALLPTLGGQTALNLAMELYEAGVLERYGVELIGANYAAIKKGEDREQFQAAMK 137

Query: 102 SCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G+ V    +V+     +     +  P +++P       G  V   + ++   L +   
Sbjct: 138 KIGLDVPRGRMVSSLEDGLAFAREVGYPVIVRPSFTLGGTGGGVAADEAALRELLGRGLR 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEI-AVPKSDFYSYELKYSSLNSTHVLPA 217
            +     L+E+ + G  E    VM D +  V  I ++   D           +S  V PA
Sbjct: 198 LSPAHTALVEESIVGWKEYELEVMRDHADTVVIITSIENVDPMGVHT----GDSITVAPA 253

Query: 218 K-IPLDIYKEVQRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
           + +    Y++++  A    + IG   G S   F  DP + ++  +E+N 
Sbjct: 254 QTLTDVEYQKMRDAAKDIIREIGVDTGGSNIQFAVDPKTGRLVVIEMNP 302


>gi|222099199|ref|YP_002533767.1| Phosphoribosylaminoimidazole carboxylase [Thermotoga neapolitana
           DSM 4359]
 gi|221571589|gb|ACM22401.1| Phosphoribosylaminoimidazole carboxylase [Thermotoga neapolitana
           DSM 4359]
          Length = 380

 Score = 72.8 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 40/202 (19%), Positives = 77/202 (38%), Gaps = 17/202 (8%)

Query: 68  VQAILELLEIPY-THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP 126
           VQ +  L +  Y  H       +  DK+  K+ +   G+PV    LV     D +     
Sbjct: 75  VQTLKRLYDEGYRIHPSPHILEIIQDKLIQKEFLRKKGIPVPRYKLVRDLENDVRD-FGF 133

Query: 127 PYVIKPLKGG-SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGD 184
           P V K  KGG    G+ +IK ++ +   L          +  +E++V+   EL   V  +
Sbjct: 134 PVVQKARKGGYDGRGVFIIKNEKDLENAL--------SGETYLEEFVEIEKELAVMVARN 185

Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244
              ++    V +  ++  +    ++    + PA+I     K  + +A    + +   GI 
Sbjct: 186 EKGEIACYPVVEM-YFDEDA---NICDVVIAPARIEEKETKIARDIAVSVVEVLEGVGIF 241

Query: 245 RSDFLFDPLSRKVFWLEINVQP 266
             +        ++   EI  +P
Sbjct: 242 GIEMFLTKQ-GEILVNEIAPRP 262


>gi|167921411|ref|ZP_02508502.1| acetyl-CoA carboxylase biotin carboxylase subunit [Burkholderia
           pseudomallei BCC215]
          Length = 481

 Score = 72.8 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 77/220 (35%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+    A +E   + +        A   DK R+++     GVP  P    
Sbjct: 92  AIHPGYGFLSENADFAAQVEAAGLIFVGPPARVIATMGDKARARETARRAGVPTVPGSEG 151

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK----DQSIPLDLLQSSSWNHGDQ 165
            +       +    I  P +IK   GG   GI V          +PL   ++ +      
Sbjct: 152 VVASLDGAHEVAARIGYPVMIKAAAGGGGRGIRVAHDAAQLAAQLPLAQREAQAAFGDGG 211

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+++     +   ++GD   +V  +   +        K             +   + 
Sbjct: 212 VYLERFIARARHIEVQILGDGE-NVIHLFERECSLQRRRQKIL----EEAPSPSLTPALR 266

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +   A    + +G RG    ++LFD    + +++E+N 
Sbjct: 267 DTLCASATRLARQVGYRGAGTLEYLFDDARGEFYFIEMNT 306


>gi|26992023|ref|NP_747448.1| pyruvate carboxylase subunit A [Pseudomonas putida KT2440]
 gi|148550456|ref|YP_001270558.1| pyruvate carboxylase subunit A [Pseudomonas putida F1]
 gi|24987158|gb|AAN70912.1|AE016735_5 acetyl-CoA carboxylase, biotin carboxylase [Pseudomonas putida
           KT2440]
 gi|148514514|gb|ABQ81374.1| acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha /
           biotin carboxylase [Pseudomonas putida F1]
 gi|313496361|gb|ADR57727.1| AccC [Pseudomonas putida BIRD-1]
          Length = 471

 Score = 72.8 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 77/221 (34%), Gaps = 20/221 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            LH  +G   E+  +  I     I +            DK  +++ + + GVPV P    
Sbjct: 76  ALHPGYGFLSENAELAEICAERGIKFIGPAADVIRRMGDKTEARRTMIAAGVPVTPGTEG 135

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGD 164
            +      +     I  P ++K   GG   GI      + +  +        + ++   +
Sbjct: 136 NVADIHEALSEGDRIGYPVMLKATSGGGGRGIRRCNSREELEQNFPRVISEATKAFGSAE 195

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDI 223
             L +  V+   +   ++GD+  +V  +            K        + P  ++  + 
Sbjct: 196 VFLEKCIVNPKHIEAQILGDSFGNVVHLFERDCSIQRRNQKL-----IEIAPSPQLTPEQ 250

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              +  LA  A +A+        +FL      +V+++E+N 
Sbjct: 251 RAYIGDLAVRAAKAVNYENAGTVEFLL--ADGEVYFMEMNT 289


>gi|325125763|gb|ADY85093.1| Carbamoyl-phosphate synthase, large subunit, glutamine-dependent
           [Lactobacillus delbrueckii subsp. bulgaricus 2038]
 gi|325125814|gb|ADY85144.1| Carbamoyl-phosphate synthase, large subunit, glutamine-dependent
           [Lactobacillus delbrueckii subsp. bulgaricus 2038]
          Length = 824

 Score = 72.8 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 46/258 (17%), Positives = 93/258 (36%), Gaps = 13/258 (5%)

Query: 42  VGLVLAHLKPDLAFNVLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSK 97
           V  ++   KPD     + G    +  +    +  LE   +    +      ++ D++  K
Sbjct: 20  VKQLIEKEKPDALLPTMGGQNALNIAMALADEGFLEKHHVKTIGTDTDTIKMAEDRLEFK 79

Query: 98  QVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
            ++   G PV  S++VN     +     I  P V++P       G  +   +Q +     
Sbjct: 80  NLMERIGEPVAKSVVVNYVEDAIAFAKEIGYPVVVRPAYTLGGTGGGIAHNEQELHEICS 139

Query: 156 QSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHV 214
                +   + LIEQ + G  E+   VM D + +   I V   +       ++  +    
Sbjct: 140 NGLRLSRVTECLIEQSIAGWKEVEYEVMRDGAGN--CITVCNMENMDPVGVHTGDSIVVA 197

Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274
               +    Y+ ++  A     A+  +G     F  +P S +   +E+N  P ++  S  
Sbjct: 198 PSQTLSDKDYQMLRSSALNIITALNIKGGCNVQFALNPDSFEYCVIEVN--PRVSRSS-- 253

Query: 275 PEMAAYAGYSFRELLLWM 292
              +   GY   +L   +
Sbjct: 254 ALASKATGYPIAKLATKI 271



 Score = 58.2 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/181 (14%), Positives = 70/181 (38%), Gaps = 11/181 (6%)

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL-QSSSWNH-GDQLLIEQYV 172
              + + + +  P +++P       G+ +   D  +   +   +S +N     +LI++Y+
Sbjct: 450 EEALKAANELGYPVLVRPSYVLGGAGMEIALNDGDLKRFIDHITSQFNIEDHPILIDKYL 509

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G E     + D    +    +   +       +S  + +   P KI  ++ + +   + 
Sbjct: 510 AGKECEVDAICDDEGILIPGIMEHVERAGV---HSGDSISIYPPQKISQEMKERIVEYSK 566

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
              +A+  +G+    F+      KV+ +E+N +   T     P ++   G    ++   +
Sbjct: 567 RLAKALKVKGLMNIQFIV--YENKVYVIEVNPRSSRT----IPYISKVTGIPLVDVATNV 620

Query: 293 V 293
           +
Sbjct: 621 I 621


>gi|261402992|ref|YP_003247216.1| acetyl-CoA carboxylase, biotin carboxylase [Methanocaldococcus
           vulcanius M7]
 gi|261369985|gb|ACX72734.1| acetyl-CoA carboxylase, biotin carboxylase [Methanocaldococcus
           vulcanius M7]
          Length = 501

 Score = 72.8 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 79/220 (35%), Gaps = 18/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+      ++     +      A      K+ +K+++   GVP+ P    
Sbjct: 77  AIHPGYGFLAENAKFARAVKKAGFEFIGPNPEAIEAMGSKINAKKIMKKAGVPLIPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGDQ 165
            I      ++    I  P V+K   GG  +G+ V    + +          + S      
Sbjct: 137 AIEDIDEAIEIAEQIGFPVVVKASAGGGGMGMSVAYSKEELREVIESARNIAKSAFGDPT 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+Y++    +   ++GD   ++  +   +        K             +  ++ 
Sbjct: 197 VFIEKYLENPRHIEIQLLGDKHGNIIHLGDRECSIQRRHQK----LIEEAPSPIMTEELR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + + + A  A +AI        +FL+   +   ++LE+N 
Sbjct: 253 ERMGKAAIKAGKAINYDSAGTVEFLY--ENGNFYFLEMNT 290


>gi|296109112|ref|YP_003616061.1| acetyl-CoA carboxylase, biotin carboxylase [Methanocaldococcus
           infernus ME]
 gi|295433926|gb|ADG13097.1| acetyl-CoA carboxylase, biotin carboxylase [Methanocaldococcus
           infernus ME]
          Length = 506

 Score = 72.8 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 37/238 (15%), Positives = 84/238 (35%), Gaps = 24/238 (10%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRS 96
            ++  V    K D     +H  +G   E+      ++     +      A      K+ +
Sbjct: 64  DAILHVAEKAKVD----AIHPGYGFLAENANFARAVKKAGFEFIGPHPDAIEAMGSKINA 119

Query: 97  KQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152
           K+++   GVP+ P     +      ++    I  P V+K   GG  +G+ V    + +  
Sbjct: 120 KKIMKKAGVPLLPGSDGPVEDVDEAIEIAEAIGFPVVVKASAGGGGMGMSVAYSKEELEK 179

Query: 153 -----DLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
                 L+  +++     + IE+Y++    +   ++GD    +  +   +        K 
Sbjct: 180 VIESTKLIAQNAFG-DSTIFIEKYLENPRHIEIQILGDRFGKIIHLGDRECSIQRRHQK- 237

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
                       +  ++ + +   A  A +AI        +FL+       ++LE+N 
Sbjct: 238 ---LIEEAPSPIMTEELRERMGESAIKAGKAINYDSAGTVEFLY--QDGNFYFLEMNT 290


>gi|170723768|ref|YP_001751456.1| acetyl-CoA carboxylase biotin carboxylase subunit [Pseudomonas
           putida W619]
 gi|169761771|gb|ACA75087.1| acetyl-CoA carboxylase, biotin carboxylase [Pseudomonas putida
           W619]
          Length = 451

 Score = 72.8 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 77/222 (34%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         L  DK+ +K  +   GVP  P    
Sbjct: 80  AIHPGYGFLAENADFAEQVEKSGFAFIGPRADTIRLMGDKVSAKDAMIKTGVPTVPGSDG 139

Query: 112 LVNRFTMDS---QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGD 164
            +      +      +  P +IK   GG   G+ V+ K++ +         ++ +     
Sbjct: 140 PLPEDEEVALAIARDVGYPVIIKAAGGGGGRGMRVVHKEEDLIASAKLTRTEAGAAFGNP 199

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+++     +   V+ D   +               L+          PA  I   
Sbjct: 200 MVYLEKFLTNPRHVEVQVLSDGQGNAI-----HLGDRDCSLQRRHQKVLEEAPAPGIDEK 254

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +EV +    A   IG RG    +FL+   + + +++E+N 
Sbjct: 255 ARQEVFKRCVDACVEIGYRGAGTFEFLY--ENGRFYFIEMNT 294


>gi|115898546|ref|XP_787409.2| PREDICTED: similar to Propionyl-Coenzyme A carboxylase, alpha
           polypeptide, partial [Strongylocentrotus purpuratus]
 gi|115934994|ref|XP_001192254.1| PREDICTED: similar to Propionyl-Coenzyme A carboxylase, alpha
           polypeptide, partial [Strongylocentrotus purpuratus]
          Length = 659

 Score = 72.8 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 79/220 (35%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+      L   ++ +   G  A     DK+ SK +     V   P    
Sbjct: 69  AVHPGYGFLSENMEFAKRLADADVAFIGPGSRAIQAMGDKIESKLLAKDAKVNTIPGYDG 128

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS----IPLDLLQSSSWNHGDQ 165
            +      ++  + I  P ++K   GG   G+ +   D        L   ++++    D+
Sbjct: 129 VVETPAQAVEVANDIGYPVMLKASAGGGGKGMRIAWNDDETREGFRLSSQEAAASFGDDR 188

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           LL+E+++D    +   V+ D+  +   +   +        K             +     
Sbjct: 189 LLVEKFIDNPRHIEIQVLADSHGNAIYLNERECSIQRRNQK----VIEEAPSTFLDESTR 244

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +   A L  +A+  +     +FL D   R  ++LE+N 
Sbjct: 245 QAMGNQAVLLARAVDYKSAGTVEFLVD-SERNFYFLEMNT 283


>gi|114771040|ref|ZP_01448480.1| Propionyl-CoA carboxylase alpha subunit [alpha proteobacterium
           HTCC2255]
 gi|114548322|gb|EAU51208.1| Propionyl-CoA carboxylase alpha subunit [alpha proteobacterium
           HTCC2255]
          Length = 627

 Score = 72.8 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 75/221 (33%), Gaps = 17/221 (7%)

Query: 56  NVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
           N +H  +G   E       L    I +    + A     DK+ SK++     V   P   
Sbjct: 76  NAVHPGYGFLSERAEFCERLAAENIIFVGPPVKAIEAMGDKITSKKIAQDANVSTVPGHM 135

Query: 111 --ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGD 164
             I   +  +   + I  P +IK   GG   G+ +   D+           +++S    D
Sbjct: 136 GLIDDAQHAVAISNKIGYPVMIKASAGGGGKGMRIAWNDEEALEGFARSKSEAASSFGDD 195

Query: 165 QLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           ++ IE+++ +   +   V+ D   +   +   +        K             +    
Sbjct: 196 RIFIEKFIVEPRHIEIQVLADQHGNCVYLGERECSIQRRNQK----VIEEAPSPFLDEKT 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              +   +    QA+G       +F+ D   R  ++LE+N 
Sbjct: 252 RAAMGEQSCALAQAVGYTSAGTVEFIVDK-ERNFYFLEMNT 291


>gi|22095485|sp|O50302|CARB_BACST RecName: Full=Carbamoyl-phosphate synthase pyrimidine-specific
           large chain; AltName: Full=Carbamoyl-phosphate
           synthetase ammonia chain
 gi|2661433|emb|CAA05020.1| carbomylphosphate synthetase large subunit [Geobacillus
           stearothermophilus]
          Length = 1064

 Score = 72.8 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 30/218 (13%), Positives = 78/218 (35%), Gaps = 14/218 (6%)

Query: 68  VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC--PSILVNRFTMDSQHLIS 125
           + A LE   +    + +     + D+ + +Q +S  G+P     + +     +     I 
Sbjct: 642 LAAELEARGVRLLGTTLEDLDRAEDRDKFEQALSELGIPKPAGKTAVSVEEAVAIAEEIG 701

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            P +++P        + ++   + +   +  +   N    +L+++Y+ G E+    + D 
Sbjct: 702 YPVLVRPSYVLGGRAMEIVYNREELLHYMEHAVRVNPQHPVLVDRYITGKEVEVDAIADG 761

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGIS 244
              V    +   +           +S  V P + +  D+  ++        + +   G+ 
Sbjct: 762 ETVVIPGIMEHIERAGVHS----GDSIAVYPPQTLSDDVIAKITDYTVKLARGLHIVGLL 817

Query: 245 RSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277
              F+       V+ LE+N       P ++ ++  P  
Sbjct: 818 NIQFVV--AGSDVYVLEVNPRSSRTVPFLSKITGVPMA 853



 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 51/297 (17%), Positives = 115/297 (38%), Gaps = 36/297 (12%)

Query: 25  ALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFNVLHGNFG 63
           AL++ G+KV  ++ + +                     V  ++   +PD     L G  G
Sbjct: 36  ALKEEGYKVILVNSNPATIMTDTEIADKVYMEPLTLDFVARIIRKERPDAILPTLGGQTG 95

Query: 64  EDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
            +  V+     +LE   +    + + A   + D+ + + +++  G PV  S +++     
Sbjct: 96  LNLAVELAKAGVLEECGVEILGTKLEAIEKAEDREQFRALMNELGEPVPESAIIHSLEEA 155

Query: 120 SQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IE 176
                 I  P +++P       G  +   ++ +   +      +   Q L+E+ + G  +
Sbjct: 156 YAFVEQIGYPVIVRPAFTLGGTGGGICTNEEELVEIVSTGLKLSPVHQCLLERSIAGYNQ 215

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAH 235
           +   VM DA+ +   I V   +     +   + +S  V P++ +    Y+ ++  +    
Sbjct: 216 IEYEVMRDANDNA--IVVCNMENID-PVGIHTGDSIVVAPSQTLSDREYQLLRNASLKII 272

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +A+G  G        DP S + + +E+N  P ++  S     +   GY   +L   +
Sbjct: 273 RALGIEGGCNVQLALDPDSFRYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAKI 325


>gi|307104173|gb|EFN52428.1| hypothetical protein CHLNCDRAFT_138936 [Chlorella variabilis]
          Length = 1204

 Score = 72.8 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 36/233 (15%), Positives = 78/233 (33%), Gaps = 17/233 (7%)

Query: 42  VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +  V      D+     +G   E+       +   I +            DK  ++++  
Sbjct: 77  IVEVAKRQGVDVVHPG-YGFLSENAAFARECQRQGITFVGPLPETIEAMGDKTVARRLAQ 135

Query: 102 SCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP----LD 153
            CGVPV P     +               P ++K   GG   G+ V++ +  +       
Sbjct: 136 ECGVPVVPGTDDALASAEEAKVFAAAAGYPVILKARSGGGGRGMRVVRAEDEMEDLFARA 195

Query: 154 LLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212
             ++ +      +  E+YV D   +   ++ D    V  +           ++       
Sbjct: 196 SNEAKAAFGDGGMFCEKYVEDPRHIEVQILADNHGGVVHLYE-----RDCSVQRRHQKVV 250

Query: 213 HVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + PA  +  ++ +++   A    + IG R     +F+ D      ++LE+N 
Sbjct: 251 EMAPAPGLAAEVKEKLYEAAVKLARHIGYRNAGTVEFMVDKQ-GAFYFLEVNP 302


>gi|302384482|ref|YP_003820304.1| acetyl-CoA carboxylase, biotin carboxylase [Clostridium
           saccharolyticum WM1]
 gi|302195110|gb|ADL02681.1| acetyl-CoA carboxylase, biotin carboxylase [Clostridium
           saccharolyticum WM1]
          Length = 450

 Score = 72.8 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 41/226 (18%), Positives = 75/226 (33%), Gaps = 15/226 (6%)

Query: 48  HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV 107
            +K D       G   E+     + E   I +            +K  +++ +   GVPV
Sbjct: 72  AMKADAVHPGF-GFLSENERFAELCEKCNITFIGPSSAVIGKMGNKSEARKTMIEAGVPV 130

Query: 108 CPS--ILVNRFTMDS--QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL----DLLQSSS 159
            P     V +          I  P +IK   GG   G+ + +  +          ++S  
Sbjct: 131 VPGGKEAVRQVNEAKSMAERIGFPVMIKASSGGGGKGMRISRCLEDFEANFKNAQMESVK 190

Query: 160 WNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
               D + IE+Y++    +   +M D   +V  +            K           A 
Sbjct: 191 GFSDDTMYIEKYIEKPRHIEFQIMADKFGNVVHLGERDCSIQRRHQKVL----EESPSAA 246

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           I  D+   +   A  A +A+G       +FL D      +++E+N 
Sbjct: 247 ISQDLRIRMGETAVRAAKAVGYENAGTIEFLLDNQKN-FYFMEMNT 291


>gi|254510661|ref|ZP_05122728.1| carbamoyl-phosphate synthase, large subunit [Rhodobacteraceae
           bacterium KLH11]
 gi|221534372|gb|EEE37360.1| carbamoyl-phosphate synthase, large subunit [Rhodobacteraceae
           bacterium KLH11]
          Length = 1114

 Score = 72.8 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 47/267 (17%), Positives = 103/267 (38%), Gaps = 33/267 (12%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAI---- 71
           AL +AG++   I         D D S  L    L  +    +L     E+G +  +    
Sbjct: 611 ALTEAGYETIMINCNPETVSTDYDTSDRLYFEPLTFEHVMEILT-KEQENGTLHGVIVQF 669

Query: 72  -----------LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTM 118
                      LE   IP   +   A  L+ D+ R + +V+  G+    + +   +   +
Sbjct: 670 GGQTPLKLANALEAEGIPILGTTPDAIDLAEDRERFQALVNDLGLKQPKNGIASTDEQAL 729

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           +    I  P VI+P        + +++    +   + ++   +    +L++ Y+ G    
Sbjct: 730 EIAGDIGFPLVIRPSYVLGGRAMEIVRDMDQLKRYINEAVVVSGDSPVLLDSYLAG---A 786

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELK-YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
             +  DA  D T++ V     +  E   +S  ++  + P  +  +I ++++  AF   +A
Sbjct: 787 VELDVDALCDGTDVHVAGIMQHIEEAGVHSGDSACSLPPYSLSKEIIEQIKDQAFKLAKA 846

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINV 264
           +   G+    F       +++ +E+N 
Sbjct: 847 LNVVGLMNVQFAIKE--DEIYLIEVNP 871



 Score = 52.8 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 44/291 (15%), Positives = 95/291 (32%), Gaps = 48/291 (16%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D                V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPGLADATYIEPITPEVVAKIIEKERPDALLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV--PVCPS 110
            + G  G +  +      +L+   +    +   A  ++ D+   ++ +   G+  P    
Sbjct: 89  TMGGQTGLNTSLALEEMGVLDKFGVEMIGAKRDAIEMAEDRALFREAMDRLGIENPKAEI 148

Query: 111 ILVNRFTMDSQHL-------------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
           +   +   D + L             +  P +I+P       G  V    +         
Sbjct: 149 VTAPKDDTDKKDLEAGVALALDTLETVGLPAIIRPAFTLGGTGGGVAYNREDYIHICRSG 208

Query: 158 SSWNHGDQLLIEQYVDG-IELTCGVMGDASL-DVTEIAVPKSDFYSYELKYSSLNSTHVL 215
              +   Q+LI++ + G  E    V+ D +   +   ++   D           +S  V 
Sbjct: 209 MDASPVGQILIDESLLGWKEYEMEVVRDTADNAIIVCSIENVDPMGVHT----GDSITVA 264

Query: 216 PA-KIPLDIYKEVQRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           PA  +    Y+ ++  +    + IG   G S   +  +P   ++  +E+N 
Sbjct: 265 PALTLTDKEYQIMRNHSIAVLREIGVETGGSNVQWAINPDDGRMVVIEMNP 315


>gi|161621299|ref|YP_585206.2| acetyl-CoA carboxylase biotin carboxylase subunit [Cupriavidus
           metallidurans CH34]
          Length = 455

 Score = 72.8 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 36/222 (16%), Positives = 80/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H  +G   E+      +E     +         L  DK+ +KQ +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAERVEKSGFVFIGPTSENIRLMGDKVSAKQAMIKSGVPCVPGSDG 136

Query: 113 ----VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
                 +  + +   +  P +IK   GG   G+ V+  + ++   +     ++       
Sbjct: 137 ALPDDPKEILATARRVGYPVIIKAAGGGGGRGMRVVHTEAALLNAVNMTREEAGRAFGNP 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
           ++ +E++++    +   ++ D       +            K          PA  IP  
Sbjct: 197 EVYMEKFLENPRHVEIQILADQHRQAIWLGERDCSMQRRHQK-----VIEEAPAPHIPRR 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + + +      A + IG RG    +FL+   + + +++E+N 
Sbjct: 252 LIERIGDRCAEACKKIGYRGAGTFEFLY--ENNEFYFIEMNT 291


>gi|154331261|ref|XP_001561449.1| carboxylase [Leishmania braziliensis MHOM/BR/75/M2904]
 gi|134058766|emb|CAM36436.1| putative carboxylase [Leishmania braziliensis MHOM/BR/75/M2904]
          Length = 665

 Score = 72.8 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 40/256 (15%), Positives = 92/256 (35%), Gaps = 30/256 (11%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H  +G   E+G +Q+ L+   I +      +     DK+ SK++    GV   P  + 
Sbjct: 81  AVHPGYGFLSENGELQSALQKNNIVFVGPDAHSIEAMGDKIESKRLARDAGVTCIPGFIG 140

Query: 113 ---VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGDQ 165
               +   +     +  P +IK   GG   G+ V   D+           ++ +  + D+
Sbjct: 141 EVRTHEDVLRFAREVGYPVMIKASGGGGGKGMRVAYNDEQCVEYYDMCKEEAKAAFNNDK 200

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           +L+E++++    +   V+ D   +   +   +        K             +     
Sbjct: 201 MLVEKFIENPRHIEIQVIADRKGNTLYLPERECSIQRRNQK----VIEEAPSVLLDAKTR 256

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI---FPEMAAYA 281
           K +   A    +A+        + + +P  ++ ++LE+N +       +    P      
Sbjct: 257 KAMGEEAVAMARAVQYVSAGTVENVVNPQ-KQFYFLEMNTR-------LQVEHPITEEIT 308

Query: 282 GYSFRELLLWMVEDAS 297
           G    +L+  M+  A+
Sbjct: 309 GI---DLVEQMLRAAA 321


>gi|313241967|emb|CBY43799.1| unnamed protein product [Oikopleura dioica]
          Length = 691

 Score = 72.8 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 47/221 (21%), Positives = 80/221 (36%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      L+   I +      A     DK+ SK V    GV V P    
Sbjct: 108 AVHPGYGFLSENAEFATKLKENGITFIGPPNGAIISMGDKIESKVVAEKAGVNVIPGFNG 167

Query: 112 LVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGD 164
           +V      ++  + I  P +IK   GG   G+ V   D              +SS+   D
Sbjct: 168 VVKDLDHAIEISNDIGYPVMIKASAGGGGKGMRVAWNDAEAKEGYYLSKQEAASSFG-DD 226

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           +LLIE++VD    +   ++ D   +V  +   +        K             I  ++
Sbjct: 227 RLLIEKFVDSPRHIELQILADKHGNVVYLNERECSVQRRNQK----VVEEAPSVFIDPEL 282

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              + + A    +A+G       +FL D      ++LE+N 
Sbjct: 283 RARMGKQACELARAVGYNSAGTVEFLVDSEKN-FYFLEMNT 322


>gi|304315759|ref|YP_003850904.1| carbamoyl-phosphate synthase, large subunit [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302777261|gb|ADL67820.1| carbamoyl-phosphate synthase, large subunit [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 1073

 Score = 72.8 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 47/287 (16%), Positives = 111/287 (38%), Gaps = 35/287 (12%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQIDVDRS---------------------VGLV 45
           G ++E + S   G     +L++ G KV  ++ + +                     +  +
Sbjct: 21  GQAAEFDYS---GTQACKSLKEEGLKVILVNNNPATIMTDTEIADIVYMENPEVDVLEAI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   +PD     + G  G + +V+     I++   I    + I +   + D+   K+ + 
Sbjct: 78  IDKERPDGILGTIGGQTGLNVVVKLKESGIIDKYGIKVLGTSIDSIKTAEDRELFKKKME 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G P+  S  VN     +        P +++P       G  ++  ++ + +       
Sbjct: 138 EIGEPIAESTTVNNVEDAVKFAEKCGYPLIVRPAFTLGGTGGGIVNNEEELRVVTDMGLK 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   ++LIE+ + G  E+   VM D++ +   I     + +     ++  +S  V P++
Sbjct: 198 KSMAHEVLIEKSLYGYKEIEYEVMRDSNDNCITIC--NMENFDPVGVHT-GDSIVVAPSQ 254

Query: 219 -IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +    Y+ ++  +    +A+   G     F  DP S + + +E+N 
Sbjct: 255 TLTDYEYQMLRTASLKIIKALKIEGGCNIQFALDPNSHQYYVIEVNP 301



 Score = 63.6 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 34/227 (14%), Positives = 79/227 (34%), Gaps = 14/227 (6%)

Query: 69  QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--SILVNRFTMDSQHLISP 126
           Q +     +    +   +   S D+ +  +++    +        L      D    +  
Sbjct: 645 QGLY-SSGVNILGTSFESIDTSEDREKFSKLLKKLNINQPKGGYALSVGDAKDVALTLGF 703

Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186
           P +++P        +  +   Q I   +  +   + G  +LI++YV+G E+      DA 
Sbjct: 704 PLLVRPSYVIGGQSMEKVNTLQEIIDYVSNAIKVSPGKPILIDKYVEGREVEV----DAV 759

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISR 245
            D  ++ +P    +       S +S  + PA+ +       +          +  +G+  
Sbjct: 760 SDGVDVLIPGIMEHIERAGVHSGDSFSMYPARNLSEHEIFTIIDYTKKISNVLNVKGLIN 819

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
             F+       V+ LE+N +   T     P M+   G    ++ + +
Sbjct: 820 IQFVV--KDGVVYVLEVNPRASRT----VPVMSKATGVPMIDIAVKI 860


>gi|239826269|ref|YP_002948893.1| carbamoyl phosphate synthase large subunit [Geobacillus sp. WCH70]
 gi|239806562|gb|ACS23627.1| carbamoyl-phosphate synthase, large subunit [Geobacillus sp. WCH70]
          Length = 1040

 Score = 72.8 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 58/308 (18%), Positives = 116/308 (37%), Gaps = 44/308 (14%)

Query: 11  EREVSLSSGKACASALEDAGFKVSQ-------IDVDRSVGLVLAHLKPDL--AFNVLHGN 61
           E + S  S  +   AL++ G++          +  D +V   L      L    NV+   
Sbjct: 572 EFDYS--SVHSVY-ALQEEGYETVLMNNNPETVSTDFAVADRLYFEPLTLEEVLNVIEAE 628

Query: 62  FGEDGLVQ----------AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
             +  +VQ            LE   I              D+ R  Q++    +P  P +
Sbjct: 629 QIKKVIVQFGGQTAINLVKGLEEANITLLGVTYDVIDQLEDRDRFYQLLEELDIPHVPGM 688

Query: 112 LVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
           + N     + +   I  P +++P       G+ ++K +Q +   LL+     +   +LI+
Sbjct: 689 MANNEEELISNAKKIGYPILLRPSYVIGGRGMFIVKNEQQL-CALLEQRIITY--PVLID 745

Query: 170 QYVDGIELTCGVMGDAS---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYK 225
            Y+DG E    V+ D +   L      V K+  +S        +S  +LPA+ I  +   
Sbjct: 746 AYLDGKEAEVDVVADGNDILLPTIIEHVEKAGVHS-------GDSYAMLPAQTITDEEQS 798

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285
           ++   A    + +  +GI    ++    + +V+ LE+N +   T     P ++   G   
Sbjct: 799 KIITYAEKIVKKLQFKGIMNIQYVI--ANDQVYVLEVNPRASRT----VPIVSKATGIPL 852

Query: 286 RELLLWMV 293
            ++   ++
Sbjct: 853 AQIATKLL 860



 Score = 70.2 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 57/287 (19%), Positives = 110/287 (38%), Gaps = 35/287 (12%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQIDVD---------------------RSVGLV 45
           G ++E + S   G     AL++ G++V  ++ +                      SV  +
Sbjct: 21  GQAAEFDYS---GTQACIALKEEGYRVILVNNNPATIMTDEVHADAVYFEPLTVDSVEAI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +A  +PD       G  G +   Q     ILE   +    + I A     D+   + ++ 
Sbjct: 78  IAKERPDGLLATFGGQTGLNLAFQLHEEGILEKYGVKLLGTPIEAIKRGEDREAFRALMY 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G PV  S ++      +     I  P +I+P       G  + +  +     + +  +
Sbjct: 138 ELGEPVPESEIITSVDEAVAFAEKIGFPIIIRPAYTLGGTGGGIAETMEQFIDLVEKGLA 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   Q L+E+ V G  E+   VM D +   T I V   +     +   + +S  V P++
Sbjct: 198 ESPITQCLVERSVAGYKEIEYEVMRDHT--NTCITVCNMENVD-PVGIHTGDSIVVAPSQ 254

Query: 219 -IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +  + Y+ ++  A     A+G  G     F  DP S++ + +E+N 
Sbjct: 255 TLTDEEYQMLRSSAIKIISALGIIGGCNIQFALDPFSKRYYLIEVNP 301


>gi|138895969|ref|YP_001126422.1| acetyl-CoA carboxylase biotin carboxylase subunit [Geobacillus
           thermodenitrificans NG80-2]
 gi|196248861|ref|ZP_03147561.1| acetyl-CoA carboxylase, biotin carboxylase [Geobacillus sp.
           G11MC16]
 gi|134267482|gb|ABO67677.1| AccC, acetyl-CoA carboxylase subunit, biotin carboxylase subunit
           [Geobacillus thermodenitrificans NG80-2]
 gi|196211737|gb|EDY06496.1| acetyl-CoA carboxylase, biotin carboxylase [Geobacillus sp.
           G11MC16]
          Length = 451

 Score = 72.8 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 80/221 (36%), Gaps = 18/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     +     + +      A      K  +++ +   GVP+ P    
Sbjct: 77  AIHPGYGFLAENEAFAELCRECNVTFIGPSPEAITKMGIKDIARETMREAGVPIVPGSRG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGD 164
            I            I  P +IK   GG   GI V + ++ +   +       ++++    
Sbjct: 137 VIESIDEARAIAAEIGYPVIIKATAGGGGKGIRVARNEEELIKGINITQQEAATAFG-NP 195

Query: 165 QLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            + IE+Y++    +   V+ D+  +   +            K             +  +I
Sbjct: 196 GVYIEKYIEDFRHVEIQVLADSYGNTIHLGERDCTIQRRLQK----LVEEAPSPALDDEI 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +++   A  A +A+   G    +F+FD  + + +++E+N 
Sbjct: 252 RQKMGEAAVKAAKAVNYTGAGTVEFIFDHRNNEFYFMEMNT 292


>gi|126669076|ref|ZP_01740008.1| acetyl-CoA carboxylase [Marinobacter sp. ELB17]
 gi|126626454|gb|EAZ97119.1| acetyl-CoA carboxylase [Marinobacter sp. ELB17]
          Length = 471

 Score = 72.8 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 34/221 (15%), Positives = 78/221 (35%), Gaps = 20/221 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+     + E   + +            DK +++  + + G+P+ P    
Sbjct: 76  AIHPGYGFLSENANFARLCEQKGMAFIGPKSDVVHKMGDKTQARNSMRAAGIPITPGSDG 135

Query: 114 NRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGD 164
           N   +D      + I  P ++K   GG   GI      Q +           + ++   +
Sbjct: 136 NLADLDEALKLANEIGYPVMVKATSGGGGRGIRRCDTPQELTAQYPRVISEATKAFGSAE 195

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDI 223
             + +  V+   +   ++ D+  +V  +            K        + P  ++  + 
Sbjct: 196 VFMEKCIVNPRHIEVQILADSHGNVIHLFERDCSIQRRNQKL-----IEIAPSPQLTPEQ 250

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +  LA  A +A+G       +FL      +V ++E+N 
Sbjct: 251 RQYIGALAVRAAEAVGYENAGTVEFLL--AGNEVHFMEMNT 289


>gi|323127932|gb|ADX25229.1| acetyl-CoA carboxylase biotin carboxylase subunit [Streptococcus
           dysgalactiae subsp. equisimilis ATCC 12394]
          Length = 454

 Score = 72.8 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 78/220 (35%), Gaps = 16/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  FG   E+     + E + I +            DK+ ++  +   GVPV P    
Sbjct: 77  AIHPGFGFLSENSKFATMCEEMNIKFIGPSASVMDKMGDKINARTEMIKAGVPVIPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG----DQ 165
            +   +  +   + I  P ++K   GG   GI  ++ +  +      +S    G      
Sbjct: 137 EVYNAQEALAIANKIGYPVMLKASAGGGGKGIRKVETEADLEAAFNAASQEALGAFGNGA 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+ +     +   ++GDA   +  +            K             I   + 
Sbjct: 197 MYLEKVIYPARHIEVQILGDAHGTIIHLGERDCSLQRNNQKVL----EESPSIAIGNTLR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +E+   A  A +A+        +FL D  S + +++E+N 
Sbjct: 253 QEMGEAAVRAAKAVAYENAGTIEFLLDEDSGEFYFMEMNT 292


>gi|251783205|ref|YP_002997510.1| acetyl-CoA carboxylase biotin carboxylase subunit [Streptococcus
           dysgalactiae subsp. equisimilis GGS_124]
 gi|242391837|dbj|BAH82296.1| acetyl-CoA carboxylase [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
          Length = 454

 Score = 72.8 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 78/220 (35%), Gaps = 16/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  FG   E+     + E + I +            DK+ ++  +   GVPV P    
Sbjct: 77  AIHPGFGFLSENSKFATMCEEMNIKFIGPSASVMDKMGDKINARTEMIKAGVPVIPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG----DQ 165
            +   +  +   + I  P ++K   GG   GI  ++ +  +      +S    G      
Sbjct: 137 EVYNAQEALAIANKIGYPVMLKASAGGGGKGIRKVETEADLEAAFNAASQEALGAFGNGA 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+ +     +   ++GDA   +  +            K             I   + 
Sbjct: 197 MYLEKVIYPARHIEVQILGDAHGTIIHLGERDCSLQRNNQKVL----EESPSIAIGNTLR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +E+   A  A +A+        +FL D  S + +++E+N 
Sbjct: 253 QEMGEAAVRAAKAVAYENAGTIEFLLDEDSGEFYFMEMNT 292


>gi|22095542|sp|Q9ZB63|CARY_BACST RecName: Full=Carbamoyl-phosphate synthase arginine-specific large
           chain; AltName: Full=Carbamoyl-phosphate synthetase
           ammonia chain
 gi|3912935|gb|AAC78719.1| carbamoylphosphate synthetase heavy subunit [Geobacillus
           stearothermophilus]
          Length = 1043

 Score = 72.8 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 41/228 (17%), Positives = 87/228 (38%), Gaps = 22/228 (9%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL--ISPPYV 129
           LE   +P             D+ R  Q++    +P  P ++ N     +     I  P +
Sbjct: 651 LEEAGVPLLGVTYDMIDQLEDRDRFYQLLEELDIPHVPGLVANNAEELAAKAAEIGYPVL 710

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA---S 186
           ++P       G+ ++  +  +   L++     +   +LI+ Y+DG E    ++ D     
Sbjct: 711 LRPSYVIGGCGMFIVHSEAQL-AALIEQGELTY--PILIDAYLDGKEAEADIVTDGTDIV 767

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISR 245
           L V    V K+  +S        +S   LPA+ +  +   ++   A    + +G +GI  
Sbjct: 768 LPVIIEHVEKAGVHS-------GDSYAWLPAQTLTGEEKAKIIDYAGRIAKKLGFKGIMN 820

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
             ++       V+ LE+N +   T     P ++   G    ++   ++
Sbjct: 821 IQYVI--ADGNVYVLEVNPRASRT----VPIVSKTTGVPLAQIATKLL 862



 Score = 58.6 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 54/279 (19%), Positives = 102/279 (36%), Gaps = 37/279 (13%)

Query: 18  SGKACASALEDAGFKVSQI----------DVD-----------RSVGLVLAHLKPDLAFN 56
           SG     A ++ G++V  +          DV             +V  ++A   PD    
Sbjct: 29  SGTQACIAFKEEGYRVILVNNNPATIMTDDVHADAVYFEPLTVEAVEAIIAKETPDGLLA 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDK---MRSKQVVSSCGVPVCP 109
              G  G +   Q     +L+   +    + I   A+   +      + ++   G PV  
Sbjct: 89  TFGGQTGLNLAFQLHEAGVLKKYGVRLLGTPIE--AIKRPRGGPRTFRALMHELGEPVPE 146

Query: 110 SILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL 167
           S +V      +     I  P +I+P       G  + +  +     + +  + +   Q L
Sbjct: 147 SEIVTSVEEAVAFAEQIGFPIIIRPAYTLGGTGGGIAENMEQFLALVEKGLNESPIHQCL 206

Query: 168 IEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYK 225
           IE+ V G  E+   VM D     T I V   +     +   + +S  V P++ +  + Y+
Sbjct: 207 IERSVAGFKEIEYEVMRDQ--SNTCITVCNMENVD-PVGIHTGDSIVVAPSQTLTDEEYQ 263

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            ++  A     A+G  G     F  DP S++ + +E+N 
Sbjct: 264 MLRSSAVKIISALGIIGGCNIQFALDPNSKQYYLIEVNP 302


>gi|242242880|ref|ZP_04797325.1| acetyl-CoA carboxylase [Staphylococcus epidermidis W23144]
 gi|242233655|gb|EES35967.1| acetyl-CoA carboxylase [Staphylococcus epidermidis W23144]
          Length = 452

 Score = 72.8 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 79/220 (35%), Gaps = 18/220 (8%)

Query: 56  NVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
           N +H  +G   E       +E   I +         +  DK+ ++Q V   GVPV P   
Sbjct: 75  NAIHPGYGFLSESTNFAKAVEDNHIHFIGPSKTTMEMMGDKITARQTVKQAGVPVIPGSN 134

Query: 113 VNRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS----WNHGD 164
               ++D        I  P V+K   GG   GI ++K+   +   L ++ S    + + D
Sbjct: 135 DAVQSVDEIKLLAKEIGFPVVLKAASGGGGKGIRIVKEASQLDQALKEAKSEGQKYFNDD 194

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           ++ +E ++     +   ++GD   +   +            + +         A +    
Sbjct: 195 RVYVEAFIPVAKHVEVQIIGDGKNNYVHLGERDCSV----QRKNQKLIEEAPCAALTEQR 250

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
              +   A    QA   R     +FL    +   +++E+N
Sbjct: 251 RTRICSDAVKVAQASRYRSAGTIEFLVTEDAH--YFIEMN 288


>gi|291295303|ref|YP_003506701.1| carbamoyl-phosphate synthase large subunit [Meiothermus ruber DSM
           1279]
 gi|290470262|gb|ADD27681.1| carbamoyl-phosphate synthase, large subunit [Meiothermus ruber DSM
           1279]
          Length = 1038

 Score = 72.8 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 56/290 (19%), Positives = 104/290 (35%), Gaps = 39/290 (13%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI---------DVD------------RSVGLV 45
           G ++E + S   G     AL   G++V  +         D +              +  +
Sbjct: 21  GQAAEFDYS---GTQAVKALRSVGYQVVLVNSNPATIMTDPELAEGTYLEPLTVEFLEKI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +A  +PD     L G    +  +    Q ILE   +    +   A     D+   ++ + 
Sbjct: 78  IAAERPDALLPTLGGQTALNLSMALYEQGILEKYGVELIGANAAAIKKGEDREEFQKAML 137

Query: 102 SCGVPVCPSILVNRFTMD---SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS 158
             GV V    +V+        ++ +   P V++P       G  + + +      L +  
Sbjct: 138 KIGVDVPRGKMVHSLEEGLAFAREVTGYPVVVRPSFTLGGTGGGIAENEAEFVEILSRGL 197

Query: 159 SWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKS-DFYSYELKYSSLNSTHVLP 216
           S +     L+E+ + G  E    VM D +  V  I   ++ D           +S  V P
Sbjct: 198 SLSPTHSALVEESIVGWKEYELEVMRDKNDTVVIITSIENLDPMGVHT----GDSITVAP 253

Query: 217 AK-IPLDIYKEVQRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           A+ +    Y+ ++  A    + IG   G S   F  DP S ++  +E+N 
Sbjct: 254 AQTLSDVEYQRMRDAAIAIIREIGVETGGSNIQFAIDPKSGRMIVIEMNP 303



 Score = 62.8 bits (152), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 30/197 (15%), Positives = 71/197 (36%), Gaps = 9/197 (4%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           L    +P   +   A   + D+    Q+ ++ G+P     +       +     +  P +
Sbjct: 667 LAEAGVPLLGTSWEAIHKAEDRAEFNQLCAALGIPQPKGAVARTPEEALKLAETLGYPLM 726

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLL-QSSSWNHGDQLLIEQYVD-GIELTCGVMGDASL 187
            +P        + V++  + +   L    ++      +L++QY++  +EL    + D   
Sbjct: 727 ARPSYVLGGRAMQVVRNPEELRWYLSGIYAALAERPSILLDQYLENALELDVDALCDGKQ 786

Query: 188 DVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
            V    +   +       +S  ++T + P  +  +  + V+        A+G RG+    
Sbjct: 787 VVVAGIMEHIERAGV---HSGDSATILPPISLTPEQLETVKAYTRKLALAVGVRGLINVQ 843

Query: 248 FLFDPLSRKVFWLEINV 264
           +        V+ LE N 
Sbjct: 844 YAI--KDGVVYILEANP 858


>gi|225028429|ref|ZP_03717621.1| hypothetical protein EUBHAL_02703 [Eubacterium hallii DSM 3353]
 gi|224954273|gb|EEG35482.1| hypothetical protein EUBHAL_02703 [Eubacterium hallii DSM 3353]
          Length = 1077

 Score = 72.8 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 83/220 (37%), Gaps = 13/220 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTMDSQHLISPPYV 129
           L  + +P   +       + D+    +++  C +P      +      + + + I  P +
Sbjct: 648 LNKIGVPILGTSAENVDAAEDRELFDEILEQCCIPRPKGGTVFTKEEAIKTANEIGYPVL 707

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           I+P       G+ +   D+ I   +     +     +LI++Y+ G+E+    + D     
Sbjct: 708 IRPSYVLGGQGMQIAISDEDISEFMDVIQRYAQEHPILIDKYLMGVEVEVDAVCDGE--- 764

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
            EI +P    +       S +S  V PA  +   I K +     L  +A+   G+    F
Sbjct: 765 -EIVIPGIMQHVERAGIHSGDSISVYPARDLSPKIKKVIGHYTKLLAKALHVIGLINIQF 823

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           +      +V+ +E+N +   T     P ++   G    +L
Sbjct: 824 IV--YQDEVYVIEVNPRSSRT----VPYISKVTGIPIVDL 857



 Score = 59.0 bits (142), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 32/198 (16%), Positives = 70/198 (35%), Gaps = 5/198 (2%)

Query: 70  AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQHLISPP 127
             L+  ++    +       + D+   K+ +   G P+ PS +V      ++    I  P
Sbjct: 106 GFLKEHKVKLIGTTGKTIRKAEDREEFKETMEKIGEPIAPSQIVTNVEDGLEYAQKIGYP 165

Query: 128 YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDAS 186
            V++P       G  +   ++     +      +   Q+L+E+ + G  E+   VM D +
Sbjct: 166 VVLRPAYTLGGSGGGIADNEEEFVEIIQNGLRLSRVGQVLVEKSIAGWKEIEYEVMRDGN 225

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRS 246
              T I V   +       ++  +        +    Y+ ++  A      +G  G    
Sbjct: 226 G--TCITVCNMENLDPVGVHTGDSIVVAPSQTLGDKEYQMLRNSALNIIDELGVEGGCNV 283

Query: 247 DFLFDPLSRKVFWLEINV 264
            F  +P +     +E+N 
Sbjct: 284 QFALNPDTFDYCVIEVNP 301


>gi|134280790|ref|ZP_01767500.1| acetyl-CoA carboxylase, biotin carboxylase [Burkholderia
           pseudomallei 305]
 gi|134247812|gb|EBA47896.1| acetyl-CoA carboxylase, biotin carboxylase [Burkholderia
           pseudomallei 305]
          Length = 481

 Score = 72.8 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 77/220 (35%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+    A +E   + +        A   DK R+++     GVP  P    
Sbjct: 92  AIHPGYGFLSENADFSAQVEAAGLIFVGPPARVIATMGDKARARETARRAGVPTVPGSEG 151

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK----DQSIPLDLLQSSSWNHGDQ 165
            +       +    I  P +IK   GG   GI V          +PL   ++ +      
Sbjct: 152 VVASLDGAHEVAARIGYPVMIKAAAGGGGRGIRVAHDAAQLAAQLPLAQREAQAAFGDGG 211

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+++     +   ++GD   +V  +   +        K             +   + 
Sbjct: 212 VYLERFIARARHIEVQILGDGE-NVIHLFERECSLQRRRQKIL----EEAPSPSLTPALR 266

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +   A    + +G RG    ++LFD    + +++E+N 
Sbjct: 267 DALCASATRLARQVGYRGAGTLEYLFDDARGEFYFIEMNT 306


>gi|126465052|ref|YP_001040161.1| pyruvate carboxylase subunit A [Staphylothermus marinus F1]
 gi|126013875|gb|ABN69253.1| pyruvate carboxylase subunit A [Staphylothermus marinus F1]
          Length = 514

 Score = 72.8 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 42/238 (17%), Positives = 92/238 (38%), Gaps = 16/238 (6%)

Query: 34  SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDK 93
           S +D+D  V   +  L  D      +G   E+ L    +      +         L+ DK
Sbjct: 53  SYLDIDEIVNAAI-ELGADAVHPG-YGFLSENPLFSKRIIKKGFIFIGPPPEIMELAGDK 110

Query: 94  MRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS-- 149
           +R+K++ +  GVP  P ++V+  +  ++       P ++K   GG  +GI ++++ +   
Sbjct: 111 VRAKEMAAKAGVPTLPWMIVDDPKEVLEFGREHGFPVILKAAGGGGGMGIRIVERKEDVE 170

Query: 150 --IPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
                   ++ +     +L +E Y++    +   ++GD    V              ++ 
Sbjct: 171 RLFEQARKEAENAFKDPRLYVEPYIENPKHIEVQILGDGDNYVHLYE------RDCSIQR 224

Query: 207 SSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
                    P+  +  ++ K +   A      I        + LFD  ++K +++EIN
Sbjct: 225 RHQKIVEEAPSPVLNNNLRKTITEDAVKLASHIKYINAGTVEMLFDMKTKKHYFMEIN 282


>gi|67906776|gb|AAY82839.1| predicted propionyl-CoA carboxylase alpha subunit [uncultured
           bacterium MedeBAC46A06]
          Length = 659

 Score = 72.8 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 35/194 (18%), Positives = 71/194 (36%), Gaps = 14/194 (7%)

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD----SQHLISPPYVIKPLKG 135
              G  A A+  DK+ SK + +  GV   P        +D    +   I  P ++K   G
Sbjct: 103 IGPGTEAIAVMGDKIESKALATKSGVSTVPGTEGEVSDVDVGLKAAAEIGYPVMVKASAG 162

Query: 136 GSSLGIIVIKKDQSIP----LDLLQSSSWNHGDQLLIEQY-VDGIELTCGVMGDASLDVT 190
           G   G+ VI+    +P      + ++ +     ++ IE++ V    +   ++ D   ++ 
Sbjct: 163 GGGKGMRVIETADDLPDGMRAAMSEAQTAFGDSRVFIEKFVVQPRHIEIQLLADQHGNIV 222

Query: 191 EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
            +   +        K             I  +   E+ R A    +A+  R     +F+ 
Sbjct: 223 YVGERECSIQRRHQK----VVEEAPSPFISPETRAEMGRQAVELARAVNYRSAGTVEFIV 278

Query: 251 DPLSRKVFWLEINV 264
               +  ++LE+N 
Sbjct: 279 -GADQDFYFLEMNT 291


>gi|82775435|ref|YP_401782.1| carbamoyl phosphate synthase large subunit [Shigella dysenteriae
           Sd197]
 gi|309787312|ref|ZP_07681924.1| carbamoyl-phosphate synthase large chain [Shigella dysenteriae
           1617]
 gi|81239583|gb|ABB60293.1| carbamoyl-phosphate synthase large subunit [Shigella dysenteriae
           Sd197]
 gi|308924890|gb|EFP70385.1| carbamoyl-phosphate synthase large chain [Shigella dysenteriae
           1617]
          Length = 1073

 Score = 72.8 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 97/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D +              V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +    Q +LE   +        A   + D+ R    +   G+    S +
Sbjct: 89  TMGGQTALNCALELERQGVLEEFGVTMIGVTADAIDKAEDRRRFDVAMKKIGLETARSGI 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     +     +  P +I+P       G  +    +       +  + +   +LLI++
Sbjct: 149 AHTMEEALAVAADVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLALSPTKELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + +   +   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIEN----FDAMGIHTGDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RNASMAVLREIGVETGGSNVQFAVNPKNGRLIVIEMNP 302



 Score = 60.1 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 30/197 (15%), Positives = 74/197 (37%), Gaps = 10/197 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYV 129
           LE   +P   +   A   + D+ R +  V    +    +  V    M  +    I  P V
Sbjct: 654 LEAAGVPVIGTSPDAIDRAEDRERFQHAVDRLKLKQPANATVTAIEMAVEKAKEIGYPLV 713

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  +  +      + S ++   +L++ ++ D +E+    + D  + 
Sbjct: 714 VRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDDAVEVDVDAICDGEMV 773

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           +    +   +    +    S +S   LPA  +  +I   +++        +  RG+    
Sbjct: 774 LIGGIMEHIE----QAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRGLMNVQ 829

Query: 248 FLFDPLSRKVFWLEINV 264
           F     + +V+ +E+N 
Sbjct: 830 FAV--KNNEVYLIEVNP 844


>gi|76788839|ref|YP_327925.1| acetyl-CoA carboxylase biotin carboxylase subunit [Chlamydia
           trachomatis A/HAR-13]
 gi|76167369|gb|AAX50377.1| biotin carboxylase [Chlamydia trachomatis A/HAR-13]
          Length = 457

 Score = 72.8 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 83/220 (37%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---S 110
            +H  +G   E+    +I E   + +      + A   DK+ +KQ+      PV P    
Sbjct: 76  AVHPGYGFLSENANFASICESCGLTFIGPSAESIATMGDKVAAKQLAKKIKCPVIPGSEG 135

Query: 111 ILVNRFT-MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSWNHGDQ 165
           ++ +    +     I  P VIK + GG   GI ++++             ++ +  +   
Sbjct: 136 VVKDEVEGIRIAEKIGFPIVIKAIAGGGGRGIRIVREKDEFYRAFTAARAEAEAGFNNPD 195

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE++++    L   V+GD   +   +            K             +  ++ 
Sbjct: 196 VYIEKFIENPRHLEVQVIGDKHGNYVYLGERDCTVQRRRQK----LIEETPSPILTPEMR 251

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +V ++A    ++ G   +   +FL D   R  +++E+N 
Sbjct: 252 AKVGKVAVDLARSAGYFSVGTVEFLLDKEKR-FYFMEMNT 290


>gi|325297960|ref|YP_004257877.1| acetyl-CoA carboxylase, biotin carboxylase [Bacteroides
           salanitronis DSM 18170]
 gi|324317513|gb|ADY35404.1| acetyl-CoA carboxylase, biotin carboxylase [Bacteroides
           salanitronis DSM 18170]
          Length = 503

 Score = 72.8 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 81/220 (36%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+           I +            DK+ +++ + + GVPV P    
Sbjct: 77  AIHPGYGFLSENSEFARRCREEGITFIGPDPETMDAMGDKISARKHMIAAGVPVVPGTEQ 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
            +       +  + I  P ++K   GG   G+ +I  +  +      + S +      D 
Sbjct: 137 PLQSVEEAKEICNRIGYPVMLKASMGGGGKGMRLIHSEDEVEEAYNTARSESMSSFGDDT 196

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E++V+    +   ++GD   +   +   +        K             +  ++ 
Sbjct: 197 VYLEKFVEEPHHIEFQILGDNYGNAVHLFERECSIQRRNQKI----VEETPSPFVTPELR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +++   A  A +A+  +G    +FL D   R  ++LE+N 
Sbjct: 253 QKMGEAAVAAAKAVRYKGAGTIEFLVDKH-RNFYFLEMNT 291


>gi|297537253|ref|YP_003673022.1| acetyl-CoA carboxylase, biotin carboxylase [Methylotenera sp. 301]
 gi|297256600|gb|ADI28445.1| acetyl-CoA carboxylase, biotin carboxylase [Methylotenera sp. 301]
          Length = 451

 Score = 72.8 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 34/222 (15%), Positives = 77/222 (34%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         L  DK+ +K  +   GVP  P    
Sbjct: 79  AIHPGYGFLSENADFAERVEQSGFVFIGPRAETIRLMGDKVSAKDAMKKAGVPCVPGSDG 138

Query: 112 LVNRFTMD---SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
            +     +       +  P +IK   GG   G+ V+  + ++   +     ++ +     
Sbjct: 139 ALPDDPAEIIKIAKKVGYPVIIKAAGGGGGRGMRVVHTEAALIASVNMTKAEAQAAFGNP 198

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+Y++    +   V+ D   +   +            K          PA  +   
Sbjct: 199 VVYMEKYLEKPRHIEIQVLADQHGNAVFLGERDCSMQRRHQK-----ILEEAPAPLLNPR 253

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +  ++      A + I  RG    +FL+   + + +++E+N 
Sbjct: 254 LRDKIGERCAEACRKIKYRGAGTFEFLY--ENNEFYFIEMNT 293


>gi|189218381|ref|YP_001939022.1| Biotin carboxylase [Methylacidiphilum infernorum V4]
 gi|189185239|gb|ACD82424.1| Biotin carboxylase [Methylacidiphilum infernorum V4]
          Length = 458

 Score = 72.8 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 33/219 (15%), Positives = 75/219 (34%), Gaps = 17/219 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     I     I +            +K+ ++      GVPV P    
Sbjct: 81  AIHPGYGFLAENPHFAEICANCNIKFIGPKAATLKKMGNKVMARFHARKAGVPVVPGSEG 140

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD----QSIPLDLLQSSSWNHGDQ 165
            +   +  +   H I  P +IK + GG   G+ +   D    Q      L++        
Sbjct: 141 VVESEKEALKISHQIGYPVIIKAVAGGGGRGMRIAHNDVSLVQGFVAARLEAEKSFGDGS 200

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+ + D   +   ++ D    +  +            K             +   + 
Sbjct: 201 IYIEKLIEDPRHVEFQIIADTKGKIFHVGERDCSVQRRNQK----LVEESPSPVVDPILR 256

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
           K++ +++    +++   G+   ++L D      +++E+N
Sbjct: 257 KKMGKISVRLAESVDYEGVGTIEYLVDKFGN-FYFIEMN 294


>gi|307083497|ref|ZP_07492610.1| acetyl-/propionyl-CoA carboxylase alpha subunit accA2
           [Mycobacterium tuberculosis SUMu012]
 gi|308366911|gb|EFP55762.1| acetyl-/propionyl-CoA carboxylase alpha subunit accA2
           [Mycobacterium tuberculosis SUMu012]
          Length = 660

 Score = 72.8 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 41/217 (18%), Positives = 82/217 (37%), Gaps = 21/217 (9%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
           +G   E+    A ++   + +    + A      K+ SK+++++ GVPV     +     
Sbjct: 73  YGFLSENAEFAAAVQEAGLTWVGPPVDAVRAMGSKIESKKLMAAAGVPV-----LEELDP 127

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQLLIEQYV-D 173
           D+      P ++K   GG   G+ V+ +  ++P ++  +            +  E+Y+  
Sbjct: 128 DAVTTAQLPVLVKASAGGGGRGMRVVHELSALPAEVEAARREAQSAFGDPTVFCERYLPT 187

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI---YKEVQRL 230
           G  +   VM D    V  +   +        K          P+ +   +     ++   
Sbjct: 188 GHHVEVQVMADTHGTVWAVGERECSIQRRHQK-----IIEEAPSPLVERVPGMRAKLFDA 242

Query: 231 AFLAHQAIGCRGISRSDFLFDPL---SRKVFWLEINV 264
           A LA  AIG  G    +FL D       + ++LE+N 
Sbjct: 243 ARLAASAIGYTGAGTVEFLADDSPGREGEFYFLEMNT 279


>gi|294993947|ref|ZP_06799638.1| pyruvate carboxylase [Mycobacterium tuberculosis 210]
          Length = 1128

 Score = 72.8 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 38/247 (15%), Positives = 82/247 (33%), Gaps = 18/247 (7%)

Query: 28  DAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87
           D G  V        +         D  +   +G   E+  + A      I +        
Sbjct: 53  DIGHPVHAYLSVDEIVATARRAGADAIYPG-YGFLSENPDLAAACAAAGISFVGPSAEVL 111

Query: 88  ALSMDKMRSKQVVSSCGVPV----CPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIV 143
            L+ +K R+       G+PV     PS  V+   +     +  P  +K + GG   G+  
Sbjct: 112 ELAGNKSRAIAAAREAGLPVLMSSAPSASVDEL-LSVAAGMPFPLFVKAVAGGGGRGMRR 170

Query: 144 IKKDQSIPLDLLQS-----SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD 198
           +    ++P  +  +     S++      L +  ++   +   ++ D   DV  +      
Sbjct: 171 VGDIAALPEAIEAASREAESAFGDPTVYLEQAVINPRHIEVQILADNLGDVIHLYE---- 226

Query: 199 FYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
                ++        + PA  +  ++  ++   A    + IG       +FL D    + 
Sbjct: 227 -RDCSVQRRHQKVIELAPAPHLDAELRYKMCVDAVAFARHIGYSCAGTVEFLLDER-GEY 284

Query: 258 FWLEINV 264
            ++E+N 
Sbjct: 285 VFIEMNP 291


>gi|198432073|ref|XP_002131318.1| PREDICTED: similar to propionyl-Coenzyme A carboxylase, alpha
           polypeptide isoform 2 [Ciona intestinalis]
          Length = 685

 Score = 72.8 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 76/220 (34%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      L    + +      A     DK++SK +    GV   P    
Sbjct: 117 AVHPGYGFLSENKEFAKTLAANNVAFIGPDTFAIDAMGDKIKSKLIAKEAGVNTIPGYDG 176

Query: 112 LVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
           +V      +     I  P +IK   GG   G+ +   ++           ++++    D+
Sbjct: 177 VVENVEDAVKIAEEIGYPVMIKASAGGGGKGMRIAWNEKETREGFRFSSQEAAASFGDDR 236

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           LLIE+++D    +   V+ D   +   +   +        K             +     
Sbjct: 237 LLIEKFIDTPRHIEMQVLADGYGNTLWLNERECSIQRRNQK----VVEEAPSIYLDPTTR 292

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + + + A    +A+  +     +FL D      ++LE+N 
Sbjct: 293 EAMGKQAVALAEAVQYKSAGTVEFLVDSKKN-FYFLEMNT 331


>gi|15597208|ref|NP_250702.1| methylcrotonyl-CoA carboxylase, alpha-subunit (biotin-containing)
           [Pseudomonas aeruginosa PAO1]
 gi|9948015|gb|AAG05400.1|AE004627_8 methylcrotonyl-CoA carboxylase, alpha-subunit (biotin-containing)
           [Pseudomonas aeruginosa PAO1]
          Length = 655

 Score = 72.8 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 79/220 (35%), Gaps = 19/220 (8%)

Query: 58  LHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
           +H  +G   E+       E   + +      A      K  +K ++   GVP+ P     
Sbjct: 84  IHPGYGFLSENADFARACEEAGLLFLGPPAAAIDAMGSKSAAKALMEEAGVPLVPGYHGE 143

Query: 115 RFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGDQL 166
              ++        I  P ++K   GG   G+ V++++  +   L     ++ +     ++
Sbjct: 144 AQDLETFRREAGRIGYPVLLKAAAGGGGKGMKVVEREAELAEALSSAQREAKAAFGDARM 203

Query: 167 LIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIY 224
           L+E+Y +    +   V  D       +            K          PA  +  ++ 
Sbjct: 204 LVEKYLLKPRHVEIQVFADRHGHCLYLNERDCSIQRRHQK-----VVEEAPAPGLGAELR 258

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +   A  A QAIG  G    +FL D    + F++E+N 
Sbjct: 259 RAMGEAAVRAAQAIGYVGAGTVEFLLDER-GQFFFMEMNT 297


>gi|71005070|ref|XP_757201.1| hypothetical protein UM01054.1 [Ustilago maydis 521]
 gi|46096563|gb|EAK81796.1| hypothetical protein UM01054.1 [Ustilago maydis 521]
          Length = 1208

 Score = 72.8 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 44/237 (18%), Positives = 86/237 (36%), Gaps = 18/237 (7%)

Query: 38  VDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSK 97
           +D  V + L H K D+     +G   E+      +E   I +            DK +++
Sbjct: 118 IDDIVRIALEH-KVDMIHPG-YGFLSENPHFAKKVEEAGIAFIGPRPETIDGLGDKTKAR 175

Query: 98  QVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS---- 149
            +     VP+ P     I            +  P +IK   GG   G+ V++K +     
Sbjct: 176 DLARKANVPIVPGTPGPIASYEEAKPFVEEVGFPVIIKAAMGGGGRGMRVVRKMEEFKES 235

Query: 150 IPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS 208
               + ++ S      + IE+++D    +   ++ D   +V              ++   
Sbjct: 236 FERAVSEAKSAFGDPTVFIERFLDRPRHIEVQLLADGEGNVV-----HLFERDCSVQRRH 290

Query: 209 LNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
                V PA  +  D+ + +   A    +  G R    ++FL D  +R  +++EIN 
Sbjct: 291 QKVVEVAPAPNLRDDVRQAILSDAVRLAKTAGYRNAGTAEFLVDQQNR-YYFIEINP 346


>gi|225572646|ref|ZP_03781401.1| hypothetical protein RUMHYD_00834 [Blautia hydrogenotrophica DSM
           10507]
 gi|225040000|gb|EEG50246.1| hypothetical protein RUMHYD_00834 [Blautia hydrogenotrophica DSM
           10507]
          Length = 1106

 Score = 72.8 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 52/276 (18%), Positives = 106/276 (38%), Gaps = 32/276 (11%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL   G+++  +              DV          +  ++A  +PD    
Sbjct: 63  SGTQACKALRQLGYEIVLVNSNPATIMTDPGIADVTYIEPLNVERLEEIIAKERPDAILP 122

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G  G +   +     IL+  ++      + A     D++  K  ++S G+ +  S +
Sbjct: 123 NLGGQSGLNLCSELSKMGILDKYQVKVIGVQVDAIERGEDRIEFKNTMNSLGIEMARSEV 182

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     +  P V++P       G  ++   + +     +    +   Q+L+E+
Sbjct: 183 AYSVDEALAIADKLGYPVVLRPAYTMGGAGGGLVYNVEELKTVCARGLQASLVGQVLVEE 242

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQ 228
            + G  EL   V+ D+  ++  +   ++      L   + +S    P   I  ++ KE+Q
Sbjct: 243 SILGWEELELEVVRDSKNNMITVCFIEN---IDPLGVHTGDSFCSAPMLTISEEVQKELQ 299

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           R A+   +AI   G +   F  DP+S ++  +EIN 
Sbjct: 300 RQAYKIVEAIEVIGGTNVQFAHDPVSGRIIVIEINP 335



 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/217 (13%), Positives = 78/217 (35%), Gaps = 16/217 (7%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-SILVN-RFTMDSQHLISPPYV 129
           LE   +    +      ++ D+   + ++    +P+    + VN    +     I  P +
Sbjct: 681 LEKYGVKILGTPPAVIDMAEDRDLFRAMMDKLEIPMPEAGMAVNVEEALQIAEKIGYPVM 740

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLD 188
           ++P       G+ V+ + +S+   +  +        +LI++++   +E     + D +  
Sbjct: 741 VRPSYVLGGRGMEVVYEPESMKAYMAAAVGVTPDRPILIDRFLRHAMECEADAISDGTHA 800

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                +   +       +S  ++  +  A I  +  K ++       + +  RG+   + 
Sbjct: 801 YVPAVMEHIELAGV---HSGDSACIIPSANISEENLKTIKEYTKKIAEEMHVRGL--MNM 855

Query: 249 LFDPLSRKVFWLEINVQPGMT--------PVSIFPEM 277
            +     KV+ LE N +   T         +S+ P  
Sbjct: 856 QYAIEDGKVYVLEANPRASRTVPLVSKVCNISMVPLA 892


>gi|149174998|ref|ZP_01853622.1| carbamoyl-phosphate synthase (glutamine-hydrolyzing) large chain
           [Planctomyces maris DSM 8797]
 gi|148846335|gb|EDL60674.1| carbamoyl-phosphate synthase (glutamine-hydrolyzing) large chain
           [Planctomyces maris DSM 8797]
          Length = 1084

 Score = 72.8 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 49/278 (17%), Positives = 105/278 (37%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVDRS------------VGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D + +            +  V+   KPD    
Sbjct: 29  SGTQACKALREDGYEVVLVNSNPATIMTDPETAHRTYIEPITWQYIQKVIEIEKPDALLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G  G +  +    + IL+ L +    +     A +  + + K+ ++  G+    S +
Sbjct: 89  TLGGQTGLNAAMDLARRGILDQLGVELIGAKEAVIAKAESRDQFKEAMTKIGLDCPRSAV 148

Query: 113 VNRFTMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           V+     +  +  I  P +I+        G  V    +     +    + +  +++L+E+
Sbjct: 149 VHNMEEANAAVKDIGLPIIIRASYTLGGTGGGVAYNREEFVEKVRSGLALSPVNEVLLEE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            + G  E    VM D + +V  I   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SILGWKEYEMEVMRDQADNVVIICAIEN----FDPMGVHTGDSITVAPAQTLTDKEYQRM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +       + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RDATIACMREIGVETGGSNVQFAVNPDTGRMTIIEMNP 302



 Score = 62.4 bits (151), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 44/288 (15%), Positives = 102/288 (35%), Gaps = 35/288 (12%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAI---- 71
           AL++ G +   +         D D S  L    L  +   N+       DG++       
Sbjct: 593 ALQELGIESIMVNSNPETVSTDYDTSDHLFFEPLTTEDVLNICD-RMKPDGVIVQFGGQT 651

Query: 72  -------LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQH 122
                  LE   +    +       + D+ R + ++    +   P+ +        +   
Sbjct: 652 PLNLARGLEAAGVNIIGTSPEMIDAAEDRERFQAILEKLELHQPPNGIATDTESARNVAS 711

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGV 181
            I  P +++P        + +   ++S+   + ++ + +    +L+++++ D IE+    
Sbjct: 712 KIGYPILVRPSYVLGGRAMEICYDEESLVRYMNEAVNASPDHPVLVDRFLEDAIEVDVDA 771

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGC 240
           + D    +    +   +    E    S +S  VLP   +P  +  E++R      + +  
Sbjct: 772 ISDGITTLVGGVMEHIE----EAGVHSGDSACVLPPHSLPESVINEIKRATHALARELKV 827

Query: 241 RGISRSDFLFDPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           +G+    F       +  V+ LE+N +   T     P ++   G S  
Sbjct: 828 KGLMNIQFAVKQTDDEYKVYILEVNPRASRTS----PFVSKATGISLP 871


>gi|187929113|ref|YP_001899600.1| carbamoyl phosphate synthase large subunit [Ralstonia pickettii
           12J]
 gi|187726003|gb|ACD27168.1| carbamoyl-phosphate synthase, large subunit [Ralstonia pickettii
           12J]
          Length = 1081

 Score = 72.8 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 30/222 (13%), Positives = 82/222 (36%), Gaps = 12/222 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQHLISPPYV 129
           LE   +P   +       + D+ R ++++ + G+   P+         +     I  P V
Sbjct: 658 LEANGVPIIGTSPDMIDAAEDRERFQKLLHALGLRQPPNRTARAEDEALKLAEEIGYPLV 717

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++ + + +   + ++   ++   +L+++++ D IE     + D    
Sbjct: 718 VRPSYVLGGRAMEIVHEPRDLERYMREAVKVSNDSPVLLDRFLNDAIECDVDCLSDGKRV 777

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                +   +       +S  ++  + P  +      E++R      +A+   G+    F
Sbjct: 778 FIGGVMEHIEQAGV---HSGDSACSLPPYSLSQATVDELKRQTAAMAKALNVVGLMNVQF 834

Query: 249 LFDPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
                  +  V+ LE+N +   T     P ++   G    ++
Sbjct: 835 AIQQKGGEDIVYVLEVNPRASRT----VPYVSKATGIPLAKV 872



 Score = 63.2 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 49/285 (17%), Positives = 96/285 (33%), Gaps = 42/285 (14%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + GFKV  +              DV          V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGFKVVLVNSNPATIMTDPNTADVTYIEPITWEVVERIIAKERPDAILP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G    +  +      +L+   +    +   A   + D+ + K  ++  G+    S  
Sbjct: 89  TMGGQTALNCALDLHRHGVLKKYNVELIGASPEAIDKAEDRQKFKDAMTKIGLGSAKSGI 148

Query: 111 -------ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
                  + V             P VI+P       G  +    +       +    +  
Sbjct: 149 AHSMDEAVAVQSQIAKETGTSGYPIVIRPSFTLGGTGGGIAYNREEFEEICKRGLDLSPT 208

Query: 164 DQLLIEQYVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IP 220
           ++LLIE+ + G  E    V+ D + + +   ++   D           +S  V PA+ + 
Sbjct: 209 NELLIEESLLGWKEYEMEVVRDKADNCIIVCSIENLDPMGIHT----GDSITVAPAQTLT 264

Query: 221 LDIYKEVQRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
              Y+ ++  +    + IG   G S   F  +P   ++  +E+N 
Sbjct: 265 DKEYQILRNASLAVLREIGVDTGGSNVQFSINPQDGRMIVIEMNP 309


>gi|119475591|ref|ZP_01615944.1| Acetyl/propionyl-CoA carboxylase, alpha subunit [marine gamma
           proteobacterium HTCC2143]
 gi|119451794|gb|EAW33027.1| Acetyl/propionyl-CoA carboxylase, alpha subunit [marine gamma
           proteobacterium HTCC2143]
          Length = 669

 Score = 72.8 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 69/220 (31%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+           I +      A  L  +K  +K  +   GVP  P    
Sbjct: 77  AIHPGYGFLSENAEFAKACTDAGIIFIGPSPEAIDLMGNKRIAKNRMIDAGVPCIPGYQG 136

Query: 112 --LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS-----SWNHGD 164
               N   ++    I  P ++K   GG   G+        +   +  +      ++   +
Sbjct: 137 ADQSNAVLLEKAQSIGYPLMVKAAAGGGGRGMRFQMSADGLEDAIKSARTEALNAFGSDE 196

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
            +L    ++G  +   V  DAS     +            K             +   + 
Sbjct: 197 LILERAVINGRHIEIQVAADASGQAVYLGERDCSIQRRHQK----VIEEAPSPFVDEKLR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             + + A  A  A   +G+   +FL D      F+LE+N 
Sbjct: 253 HLMGQAAVNAASACHYQGVGTVEFLVDA-DGSFFFLEMNT 291


>gi|254182780|ref|ZP_04889373.1| acetyl-CoA carboxylase, biotin carboxylase [Burkholderia
           pseudomallei 1655]
 gi|184213314|gb|EDU10357.1| acetyl-CoA carboxylase, biotin carboxylase [Burkholderia
           pseudomallei 1655]
          Length = 481

 Score = 72.8 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 78/220 (35%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+    A +E   + +        A   DK R+++     GVP  P    
Sbjct: 92  AIHPGYGFLSENADFAAQVEAAGLIFVGPPARVIATMGDKARARETARRAGVPTVPGSEG 151

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK----DQSIPLDLLQSSSWNHGDQ 165
            +       +    I  P +IK   GG   GI V          +PL   ++ +      
Sbjct: 152 VVASLDGAHEVAARIGYPVMIKAAAGGGGRGIRVAHDAAQLAAQLPLAQREAQAAFGDGG 211

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+++     +   ++GD   +V  +   +        K             +   + 
Sbjct: 212 VYLERFIARARHIEVQILGDGE-NVIHLFERECSLQRRRQKIL----EEAPSPSLTPALR 266

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +   A    + +G RG    ++LFD    +++++E+N 
Sbjct: 267 DALCASATRLARQVGYRGAGTLEYLFDDARGELYFIEMNT 306


>gi|310816338|ref|YP_003964302.1| acetyl-CoA carboxylase biotin carboxylase subunit
           [Ketogulonicigenium vulgare Y25]
 gi|308755073|gb|ADO43002.1| acetyl-CoA carboxylase biotin carboxylase subunit
           [Ketogulonicigenium vulgare Y25]
          Length = 451

 Score = 72.8 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 37/207 (17%), Positives = 76/207 (36%), Gaps = 19/207 (9%)

Query: 69  QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---SILVNRFTMDSQ--HL 123
           QA+ E   +           +  DK+ +K+ + + GVP  P   S+L +     +Q    
Sbjct: 92  QAVAE-AGLILVGPPADVMRMMGDKVLAKRAMLAAGVPCVPGPSSVLPDDPEQIAQLADD 150

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQLLIEQYV-DGIELT 178
           I  P ++K   GG   G+ +++    +P   +    ++  +     + +E+++     + 
Sbjct: 151 IGYPVILKAAGGGGGRGMRIVRTPADLPEAFMLTRQEAQRFFGNPDIYMEKFLQRPRHVE 210

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQA 237
             V+ D   +   +            K          PA  I  D+   +      A Q 
Sbjct: 211 IQVIADHFGNALWLGERDCSMQRRHQK-----VIEEAPAPHIDRDLIAAIGARCAKACQD 265

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINV 264
           IG  G    +FL+       +++E+N 
Sbjct: 266 IGYTGAGTFEFLY--EDGAFYFIEMNT 290


>gi|219128321|ref|XP_002184364.1| precursor of carboxylase pyruvate carboxylase [Phaeodactylum
           tricornutum CCAP 1055/1]
 gi|217404165|gb|EEC44113.1| precursor of carboxylase pyruvate carboxylase [Phaeodactylum
           tricornutum CCAP 1055/1]
          Length = 1252

 Score = 72.8 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 41/247 (16%), Positives = 91/247 (36%), Gaps = 24/247 (9%)

Query: 33  VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
              +D+D+ V + + + K        +G   E+      L+   I +    +       D
Sbjct: 147 AQYLDIDKIVDICVKN-KVQAVHPG-YGFLSENETFAKKLDNAGIIFVGPTVQNLQAFGD 204

Query: 93  KMRSKQVVSSCGVPVCPS--------ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
           K  ++ +  +C VPV              + +  D  +    P ++K L GG   GI ++
Sbjct: 205 KTAARNMAIACNVPVVAGSHDAFATAKEASAWINDPANQCDYPVIVKALMGGGGRGIRIV 264

Query: 145 KKDQSI-----PLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSD 198
             ++ +           +S++    +  +E+YV+    +    +GD + +V  +      
Sbjct: 265 PTEKDLNAMFQQASNEAASAFG-DGRCFVEKYVEKPRHVEVQCLGDGTGNVIHLW----- 318

Query: 199 FYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
                ++        + PA+ +  D   ++   A    Q    R     +FL D  + K 
Sbjct: 319 DRDCSVQRRHQKVVELAPAEGLSEDGRNQILNDAVRLLQNANYRNAGTVEFLVDK-NGKH 377

Query: 258 FWLEINV 264
           +++E+N 
Sbjct: 378 YFMEVNP 384


>gi|196250536|ref|ZP_03149227.1| phosphoribosylaminoimidazole carboxylase, ATPase subunit
           [Geobacillus sp. G11MC16]
 gi|196210026|gb|EDY04794.1| phosphoribosylaminoimidazole carboxylase, ATPase subunit
           [Geobacillus sp. G11MC16]
          Length = 385

 Score = 72.8 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 34/191 (17%), Positives = 72/191 (37%), Gaps = 13/191 (6%)

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL--ISPPYVIKPLKGG 136
           Y   G    A++ D+   K  +   G+PV P   VN +    Q +  I  P V+K  +GG
Sbjct: 97  YVPQGSRLLAVTQDRALEKAAIVEAGLPVAPYAEVNGWDELEQAVRTIGFPCVLKTRRGG 156

Query: 137 -SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195
               G  V++ ++ +      +  ++ G  +L        E++  V  +   +     V 
Sbjct: 157 YDGKGQYVLRGERDLAKA---AELFDFGPCILEGWVSFVKEMSVIVARNGDGETAVFPVA 213

Query: 196 KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255
           ++          ++    ++PA+IP  + +   R A     +    G    +        
Sbjct: 214 ENIHV------ENILHQTIVPARIPEHVEERAIRYAKTLATSFSLVGTLAVEMFLTE-DG 266

Query: 256 KVFWLEINVQP 266
           +++  E+  +P
Sbjct: 267 EIYINELAPRP 277


>gi|189463098|ref|ZP_03011883.1| hypothetical protein BACCOP_03800 [Bacteroides coprocola DSM 17136]
 gi|189430077|gb|EDU99061.1| hypothetical protein BACCOP_03800 [Bacteroides coprocola DSM 17136]
          Length = 503

 Score = 72.8 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 80/220 (36%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+           I +            DK+ +++ + + GVPV P    
Sbjct: 77  AIHPGYGFLSENSEFARRCREEGIIFIGPDPETMDAMGDKISARKHMIAAGVPVVPGTEQ 136

Query: 114 N----RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
                    +  + I  P ++K   GG   G+ +I  +  +      + S +      D 
Sbjct: 137 PLQSVEEAKEICNRIGYPVMLKASMGGGGKGMRLIHSESEVEEAYNTARSESMSSFGDDT 196

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E++V+    +   ++GD   +   +   +        K             +  ++ 
Sbjct: 197 VYLEKFVEEPHHIEFQILGDNYGNAVHLFERECSIQRRNQKI----VEETPSPFVTPELR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +++   A  A +A+  +G    +FL D   R  ++LE+N 
Sbjct: 253 QKMGEAAVAAAKAVNYKGAGTIEFLVDKH-RNFYFLEMNT 291


>gi|89094594|ref|ZP_01167532.1| biotin carboxylase [Oceanospirillum sp. MED92]
 gi|89081193|gb|EAR60427.1| biotin carboxylase [Oceanospirillum sp. MED92]
          Length = 446

 Score = 72.8 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 36/217 (16%), Positives = 78/217 (35%), Gaps = 18/217 (8%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI--LVNRF 116
           +G   E+      +E     +         L  DK+ + + +   GVP  P     +   
Sbjct: 82  YGFLAENADFAEQVERSGFTFIGPKADTIRLMGDKVSAIEAMKKAGVPTVPGSDGALPED 141

Query: 117 TM---DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGDQLLIE 169
                +    I  P +IK   GG   G+ V+  + S+   +     ++++    D + +E
Sbjct: 142 PEKVHEIARRIGYPVIIKAAAGGGGRGMRVVHSEASLISSIHVTQSEAAAAFGDDTVYME 201

Query: 170 QYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
           ++++    +   V+ D   +   +           ++          PA  +  D   +V
Sbjct: 202 KFLENPRHVEVQVLADGQGNAIHLY-----DRDCSMQRRHQKVVEEAPAPHLDPDARAQV 256

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +    A   IG RG    +FL+   +   +++E+N 
Sbjct: 257 LQACVDACIEIGYRGAGTFEFLY--ENGGFYFIEMNT 291


>gi|325275100|ref|ZP_08141078.1| pyruvate carboxylase subunit A [Pseudomonas sp. TJI-51]
 gi|324099765|gb|EGB97633.1| pyruvate carboxylase subunit A [Pseudomonas sp. TJI-51]
          Length = 471

 Score = 72.8 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 77/221 (34%), Gaps = 20/221 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            LH  +G   E+  +  I     I +            DK  +++ + + GVPV P    
Sbjct: 76  ALHPGYGFLSENAELAEICAERGIKFIGPAADVIRRMGDKTEARRTMIAAGVPVTPGTEG 135

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGD 164
            +      +     I  P ++K   GG   GI      + +  +        + ++   +
Sbjct: 136 NVADIHEALSEGDRIGYPVMLKATSGGGGRGIRRCNSREELEQNFPRVISEATKAFGSAE 195

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDI 223
             L +  V+   +   ++GD+  +V  +            K        + P  ++  + 
Sbjct: 196 VFLEKCIVNPKHIEAQILGDSFGNVVHLFERDCSIQRRNQKL-----IEIAPSPQLTPEQ 250

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              +  LA  A +A+        +FL      +V+++E+N 
Sbjct: 251 RAYIGDLAVRAAKAVDYENAGTVEFLL--ADGEVYFMEMNT 289


>gi|257452284|ref|ZP_05617583.1| acetyl-CoA carboxylase, biotin carboxylase [Fusobacterium sp.
           3_1_5R]
 gi|317058827|ref|ZP_07923312.1| biotin carboxylase [Fusobacterium sp. 3_1_5R]
 gi|313684503|gb|EFS21338.1| biotin carboxylase [Fusobacterium sp. 3_1_5R]
          Length = 447

 Score = 72.8 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 38/219 (17%), Positives = 78/219 (35%), Gaps = 17/219 (7%)

Query: 58  LHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
           +H  +G   E+     I    EI +    I       DK  ++    +  VPV     + 
Sbjct: 78  IHPGYGFLSENAKFAEICMSHEITFIGPRIDCIQNMGDKATARATAIANEVPVSRGTGIV 137

Query: 115 RFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSWNHGDQL 166
           +   ++    +  I  P +IK   GG   G+ +   ++ +         ++ +      +
Sbjct: 138 QDVEEAVKRVEEEIQYPVMIKATAGGGGKGMRIAFSEEELRENMVAAQQEALAAFGNGDV 197

Query: 167 LIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
            IE+Y++    +   V+GD   +V  ++           K             +P  I  
Sbjct: 198 YIEKYIEEPRHVEVQVLGDNYGNVIHLSTRDCSIQRRHQKMI----EEAPAFSVPFKIQN 253

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           E+   A    +AI        +FL D  + + +++E+N 
Sbjct: 254 EMGEAAVRLAKAIQYNSAGTLEFLVDK-NNQYYFMEMNT 291


>gi|254672651|emb|CBA06462.1| Biotin carboxylase [Neisseria meningitidis alpha275]
          Length = 454

 Score = 72.8 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 81/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---S 110
            +H  +G   E+      +E     +         L  DK+ +K  + + GVP  P    
Sbjct: 77  AVHPGYGFLAENADFAEQVEQSGFTFIGPKPDTIRLMGDKVSAKHAMIAAGVPCVPGSDG 136

Query: 111 ILVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
            L +     +     +  P +IK   GG   G+ V++K + +   +     ++ +     
Sbjct: 137 ALPDDGEEILKIADKVGYPVIIKASGGGGGRGMRVVEKKEDLLQSVEMTKAEAGAAFGNP 196

Query: 165 QLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+Y+     +   V+ D   +   +A          L+          PA  I  +
Sbjct: 197 MVYMERYLQRPRHVEIQVIADEHGNAVYLAE-----RDCSLQRRHQKVIEEAPAPFITEE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              ++      A + IG RG    +FL+     + F++E+N 
Sbjct: 252 ERAKIGNACADACKRIGYRGAGTFEFLY--EDGEFFFIEMNT 291


>gi|15805695|ref|NP_294391.1| carbamoyl phosphate synthase large subunit [Deinococcus radiodurans
           R1]
 gi|22095540|sp|Q9RWK0|CARB_DEIRA RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|6458373|gb|AAF10248.1|AE001924_1 carbamoyl-phosphate synthase, large subunit [Deinococcus
           radiodurans R1]
          Length = 1024

 Score = 72.8 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 53/289 (18%), Positives = 103/289 (35%), Gaps = 38/289 (13%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI---------DVD------------RSVGLV 45
           G ++E + S   G     AL++ G++V  +         D +              V  +
Sbjct: 21  GQAAEFDYS---GTQALKALKNEGYRVILVNSNPATIMTDPELADATYLEPLTPEFVEKI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   KPD     L G    +  +    +  LE   +    +G+ A     D+   +  + 
Sbjct: 78  IEKEKPDAILPTLGGQTALNLAMELHERGSLEKYGVELIGAGVEAIKKGEDRELFQAAMK 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             GV      +V+     ++ Q  I  P VI+P       G  +    +           
Sbjct: 138 KIGVETARGKMVHSMEEAVEYQKEIGLPIVIRPSFTLGGTGGGIAHTYEEFLAITEGGLR 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPA 217
            +    +L+E+ + G  E    VM D +  V  I   ++    ++       +S  V PA
Sbjct: 198 DSPVTSVLLEESILGWKEYELEVMRDTADTVIIITSIEN----FDPMGVHTGDSITVAPA 253

Query: 218 K-IPLDIYKEVQRLAFLAHQAIG-CRGISRSDFLFDPLSRKVFWLEINV 264
           + +    Y+ ++  +    + IG   G S   F  +P + +V  +E+N 
Sbjct: 254 QTLSDVEYQRLRDQSLAIIREIGVATGGSNIQFAVNPDNGRVIVIEMNP 302


>gi|291459951|ref|ZP_06599341.1| carbamoyl-phosphate synthase, large subunit [Oribacterium sp. oral
           taxon 078 str. F0262]
 gi|291417292|gb|EFE91011.1| carbamoyl-phosphate synthase, large subunit [Oribacterium sp. oral
           taxon 078 str. F0262]
          Length = 1067

 Score = 72.8 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 36/227 (15%), Positives = 79/227 (34%), Gaps = 13/227 (5%)

Query: 70  AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPP 127
             L  + +    +       + D+    +++   G+       V        +   +  P
Sbjct: 648 GALREMGVSILGTSPEDVDRAEDRELFDEILEKNGIRRPEGRSVRTMEEAKHAASELGYP 707

Query: 128 YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL 187
            +++P       G+ +   D  +   +L          +LI++YV G EL      DA  
Sbjct: 708 VLVRPSYVLGGQGMRIAISDSDLEEYILAIDESAKEHPILIDKYVRGKELEV----DAVY 763

Query: 188 DVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRS 246
           D +EI +P    +       S +S  V P + +     K +        +A+  RG+   
Sbjct: 764 DGSEILIPGIMEHIERSGIHSGDSISVYPPRGLRPLARKRLLEATEKLARALCVRGLINI 823

Query: 247 DFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            F+      +++ +E+N +   T     P ++   G     +   ++
Sbjct: 824 QFI--AREDEIYVIEVNPRSSRT----VPYLSKVTGIPIVSIAARIL 864



 Score = 68.2 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 50/286 (17%), Positives = 102/286 (35%), Gaps = 33/286 (11%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQID-------VDRSVGL--------------V 45
           G ++E + +   G     +L + G +V  ++        DR +                +
Sbjct: 20  GQAAEFDYA---GTQACRSLREEGVEVVLLNSNPATIMTDREIADHVYIEPLCTEVVEKL 76

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   +PD     L G  G +  V       LE   +    +  L    + D++  K+ + 
Sbjct: 77  IERERPDSILPTLGGQAGLNLAVALSESGFLESHSVRLIGTTELTIRKAEDRLLFKETME 136

Query: 102 SCGVPVCPSILVNRFTMD--SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G PV PS +V   +    +   I  P V++P       G  + ++ +     L     
Sbjct: 137 RIGEPVAPSRIVRSVSEGLLAAEEIGYPVVLRPAYTLGGSGGGIAQEREQCREILENGLR 196

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   ++L+EQ + G  E+   +M D++ +   I     +       ++  +        
Sbjct: 197 LSRVHEVLVEQSIAGWKEIEYELMRDSAGNAVSIC--NMENLDPVGVHTGDSIVCAPSQT 254

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +    Y+ ++  A      +G  G     F  DP S + F +E+N 
Sbjct: 255 LSDREYQLLRSSALRIVTELGITGGCNVQFALDPESFRYFVIEVNP 300


>gi|253997736|ref|YP_003049799.1| acetyl-CoA carboxylase, biotin carboxylase [Methylovorus sp.
           SIP3-4]
 gi|253984415|gb|ACT49272.1| acetyl-CoA carboxylase, biotin carboxylase [Methylovorus sp.
           SIP3-4]
          Length = 449

 Score = 72.8 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 78/221 (35%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-SIL 112
            +H  +G   E+      +E     +         L  DK+ +K  + + GVP  P S  
Sbjct: 77  AIHPGYGFLSENADFAERVEQSGFVFIGPRAETIRLMGDKVSAKDAMKAAGVPCVPGSEG 136

Query: 113 VNRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
                 D+       I  P +IK   GG   G+ V+  + ++   +     ++ +     
Sbjct: 137 ALPDDPDAILRTAKEIGYPVIIKAAGGGGGRGMRVVHTEAALLNSVSMTKAEAGAAFGNP 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            + +E++++    +   V+ D   +   +            K             I   +
Sbjct: 197 TVYMEKFLEQPRHIEIQVLSDEHGNAVYLGERDCSMQRRHQKVL----EEAPAPGITQKM 252

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +++      A + I  RG    +FL+   + + +++E+N 
Sbjct: 253 REKIGERCADACRRINYRGAGTFEFLY--ENGEFYFIEMNT 291


>gi|221633596|ref|YP_002522822.1| acetyl-CoA carboxylase, biotin carboxylase [Thermomicrobium roseum
           DSM 5159]
 gi|221156568|gb|ACM05695.1| acetyl-CoA carboxylase, biotin carboxylase [Thermomicrobium roseum
           DSM 5159]
          Length = 450

 Score = 72.8 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 36/219 (16%), Positives = 82/219 (37%), Gaps = 17/219 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-SIL 112
            LH  +G   E+ L+  I E   I +            DK  +++++   G+P+ P S  
Sbjct: 77  ALHPGYGFLAENALLAEICEECGITFIGPRPQTLRALGDKAEARRLMQRAGLPIVPGSET 136

Query: 113 VNRFTMDS---QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
             R   ++      +  P ++K   GG   G+ ++++++ +   L  +            
Sbjct: 137 PVRDASEARRIARKLGYPVLVKAAAGGGGRGMRIVREERELATALQVAQQEAQAAFGDPS 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+Y++    +   ++ D   ++  +        S + +Y  L         +   + 
Sbjct: 197 VYLERYLERPRHVEVQILADQHGNIVAVGERD---CSIQRRYQKL-IEEAPAPDLSARVR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
             +   A    +A+G  G    +FL D      ++ E N
Sbjct: 253 DALHEAAVRGARAVGYVGAGTFEFLVD-REGHFYFTEAN 290


>gi|138893914|ref|YP_001124367.1| phosphoribosylaminoimidazole carboxylase ATPase subunit
           [Geobacillus thermodenitrificans NG80-2]
 gi|134265427|gb|ABO65622.1| Phosphoribosylaminoimidazole carboxylase ATPasesubunit [Geobacillus
           thermodenitrificans NG80-2]
          Length = 382

 Score = 72.8 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 34/191 (17%), Positives = 72/191 (37%), Gaps = 13/191 (6%)

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL--ISPPYVIKPLKGG 136
           Y   G    A++ D+   K  +   G+PV P   VN +    Q +  I  P V+K  +GG
Sbjct: 94  YVPQGSRLLAVTQDRALEKAAIVEAGLPVAPYAEVNGWDELEQAVRTIGFPCVLKTRRGG 153

Query: 137 -SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195
               G  V++ ++ +      +  ++ G  +L        E++  V  +   +     V 
Sbjct: 154 YDGKGQYVLRGERDLAKA---AELFDFGPCILEGWVSFVKEMSVIVARNGDGETAVFPVA 210

Query: 196 KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255
           ++          ++    ++PA+IP  + +   R A     +    G    +        
Sbjct: 211 ENIHV------ENILHQTIVPARIPEHVEERAIRYAKTLATSFSLVGTLAVEMFLTE-DG 263

Query: 256 KVFWLEINVQP 266
           +++  E+  +P
Sbjct: 264 EIYINELAPRP 274


>gi|296188909|ref|XP_002742551.1| PREDICTED: propionyl-CoA carboxylase alpha chain, mitochondrial
           isoform 2 [Callithrix jacchus]
          Length = 702

 Score = 72.8 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 74/220 (33%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      L    + +      A     DK+ SK +     V   P    
Sbjct: 112 AVHPGYGFLSENKEFARCLAAEGVIFIGPDTHAIQAMGDKIESKLLAKKAKVNTIPGFDG 171

Query: 112 LVNRFTMDS--QHLISPPYVIKPLKGGSSLGIIVIKKDQS----IPLDLLQSSSWNHGDQ 165
           +V            I  P +IK   GG   G+ +   D+       L   +++S    D+
Sbjct: 172 VVKDAEEAVRIAREIGYPVMIKASAGGGGKGMRIAWDDEETRDGFRLSSQEAASSFGDDR 231

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           LLIE+++D    +   V+GD   +   +   +        K             +  +  
Sbjct: 232 LLIEKFIDNPRHIEIQVLGDKHGNALWLNERECSIQRRNQK----VVEEAPSIFLDAETR 287

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +   A    +A+        +FL D      ++LE+N 
Sbjct: 288 RAMGEQAVALAKAVKYSSAGTIEFLVDSKKN-FYFLEMNT 326


>gi|238896763|ref|YP_002921508.1| acetyl-CoA carboxylase biotin carboxylase subunit [Klebsiella
           pneumoniae NTUH-K2044]
 gi|238549090|dbj|BAH65441.1| acetyl-CoA carboxylase [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
          Length = 449

 Score = 72.8 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 42/222 (18%), Positives = 82/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         L  DK+ +   +   GVP  P    
Sbjct: 77  AIHPGYGFLSENANFAEQVERSGFIFIGPKADTIRLMGDKVSAITAMKKAGVPTVPGSDG 136

Query: 112 -LVNRFTMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
            L +    +  H   I  P +IK   GG   G+ V++ D  +   +     ++ +  + D
Sbjct: 137 PLTDDMDANRAHAKRIGYPVIIKASGGGGGRGMRVVRSDAELAQSISMTKAEAKAAFNND 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+Y++    +   V+ D   +   +A           K          PA  I  +
Sbjct: 197 MVYMEKYLENPRHIEIQVLADGQGNAIYLAERDCSMQRRHQK-----VVEEAPAPGITPE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + + +      A   IG RG    +FLF   + + +++E+N 
Sbjct: 252 LRRYIGERCAKACVDIGYRGAGTFEFLF--ENGEFYFIEMNT 291


>gi|257465916|ref|ZP_05630227.1| acetyl-CoA carboxylase, biotin carboxylase [Fusobacterium
           gonidiaformans ATCC 25563]
 gi|315917072|ref|ZP_07913312.1| biotin carboxylase [Fusobacterium gonidiaformans ATCC 25563]
 gi|313690947|gb|EFS27782.1| biotin carboxylase [Fusobacterium gonidiaformans ATCC 25563]
          Length = 447

 Score = 72.8 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 38/219 (17%), Positives = 78/219 (35%), Gaps = 17/219 (7%)

Query: 58  LHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
           +H  +G   E+     I    EI +    I       DK  ++    +  VPV     + 
Sbjct: 78  IHPGYGFLSENAKFAEICMSHEITFIGPRIDCIQNMGDKATARATAIANEVPVSRGTGIV 137

Query: 115 RFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSWNHGDQL 166
           +   ++    +  I  P +IK   GG   G+ +   ++ +         ++ +      +
Sbjct: 138 QDVEEAVKRVEEEIQYPVMIKATAGGGGKGMRIAFSEEELRENMVAAQQEALAAFGNGDV 197

Query: 167 LIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
            IE+Y++    +   V+GD   +V  ++           K             +P  I  
Sbjct: 198 YIEKYIEEPRHVEVQVLGDNYGNVIHLSTRDCSIQRRHQKMI----EEAPAFSVPFKIQN 253

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           E+   A    +AI        +FL D  + + +++E+N 
Sbjct: 254 EMGEAAVRLAKAIQYNSAGTLEFLVDK-NNQYYFMEMNT 291


>gi|256832530|ref|YP_003161257.1| pyruvate carboxylase [Jonesia denitrificans DSM 20603]
 gi|256686061|gb|ACV08954.1| pyruvate carboxylase [Jonesia denitrificans DSM 20603]
          Length = 1132

 Score = 72.8 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 36/237 (15%), Positives = 79/237 (33%), Gaps = 18/237 (7%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
             +  V      D  +   +G   E+           + +         L+ +K+ + + 
Sbjct: 65  EEIIRVAELAGADAVYPG-YGFLSENPQFARACRDKGLTFVGPPAEVLELAGNKVAALKA 123

Query: 100 VSSCGVPVCPSILVN---RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS----IPL 152
               G+PV  S   +    + M + H I  P   K + GG   G+  + + +     +  
Sbjct: 124 AREAGIPVLASSEPSSDIEYLMSAAHEIGFPVFCKAVAGGGGRGMRRVDRPEDLQQSLES 183

Query: 153 DLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
            + ++        + +EQ V     +   ++ D   +V              ++      
Sbjct: 184 AMREAEGAFGDPTMFVEQAVLRPRHIEVQILADGQGNVV-----HLFERDCSVQRRHQKV 238

Query: 212 THVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS---RKVFWLEINV 264
             + PA  +  DI   + R A    ++IG +     +FL D       +  ++E+N 
Sbjct: 239 IEIAPAPNLDPDIRDALCRDAVKFAKSIGYQNAGTVEFLVDTAGERAGQHVFIEMNP 295


>gi|297197884|ref|ZP_06915281.1| pyruvate carboxylase [Streptomyces sviceus ATCC 29083]
 gi|197717618|gb|EDY61652.1| pyruvate carboxylase [Streptomyces sviceus ATCC 29083]
          Length = 1124

 Score = 72.8 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 40/247 (16%), Positives = 82/247 (33%), Gaps = 18/247 (7%)

Query: 28  DAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87
           + G  V        +         D  +   +G   E+  +    E   I +        
Sbjct: 53  EPGHPVRAYLSVEEIIRAARKAGADAVYPG-YGFLSENPELARACEEAGITFVGPSADIL 111

Query: 88  ALSMDKMRSKQVVSSCGVPV----CPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIV 143
            L+ +K R+     + GVPV     PS  V+   + +   +  P  +K + GG   G+  
Sbjct: 112 ELTGNKARAVAAARAAGVPVLGSSAPSSDVDEL-VRAADEVGFPLFVKAVAGGGGRGMRR 170

Query: 144 IKKDQSIPLDLLQSSSWNH----GDQLLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSD 198
           ++    +   +  ++           + +E+  V+   +   ++ D   +V  +      
Sbjct: 171 VEDPAQLRESIEAAAREAASAFGDSTVFLEKAVVEPRHIEVQILADGQGNVIHLYE---- 226

Query: 199 FYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
                ++        + PA  +  D+   +   A    + IG R     +FL D     V
Sbjct: 227 -RDCSVQRRHQKVIELAPAPNLDPDLRDRICADAVRFAREIGYRNAGTVEFLLDRDGNHV 285

Query: 258 FWLEINV 264
           F  E+N 
Sbjct: 286 FI-EMNP 291


>gi|116252304|ref|YP_768142.1| propionyl-CoA carboxylase alpha subunit [Rhizobium leguminosarum
           bv. viciae 3841]
 gi|115256952|emb|CAK08046.1| putative propionyl-CoA carboxylase alpha subunit [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 673

 Score = 72.8 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 37/202 (18%), Positives = 70/202 (34%), Gaps = 14/202 (6%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL----ISPP 127
           LE   I +      A     DK+ SK+  ++ GV   P  L          +    I  P
Sbjct: 95  LEKQGIIFIGPKPKAIMAMGDKIESKKFANAAGVSTVPGHLGIIEDAAHAEVISAGIGYP 154

Query: 128 YVIKPLKGGSSLGIIVIKKDQS----IPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182
            +IK   GG   G+ +                ++ S    D++ IE++ V+   +   V+
Sbjct: 155 VMIKASAGGGGKGMRIAWNQAEVRDGFERARSEAKSSFGDDRVFIEKFVVEPRHIEIQVL 214

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            DA  +V  +   +        K     +       +     K +   +    +A+  + 
Sbjct: 215 ADAHGNVVYLGERECSIQRRNQK----VAEEAPSPFLDEATRKAMGEQSVALAKAVDYQS 270

Query: 243 ISRSDFLFDPLSRKVFWLEINV 264
               +F+ D   R  ++LE+N 
Sbjct: 271 AGTVEFIVD-RDRNFYFLEMNT 291


>gi|207723991|ref|YP_002254389.1| carbamoyl-phosphate synthase large chain (carbamoyl-phosphate
           synthetase ammonia chain) protein [Ralstonia
           solanacearum MolK2]
 gi|207742901|ref|YP_002259293.1| carbamoyl-phosphate synthase large chain (carbamoyl-phosphate
           synthetase ammonia chain) protein [Ralstonia
           solanacearum IPO1609]
 gi|206589199|emb|CAQ36161.1| carbamoyl-phosphate synthase large chain (carbamoyl-phosphate
           synthetase ammonia chain) protein [Ralstonia
           solanacearum MolK2]
 gi|206594296|emb|CAQ61223.1| carbamoyl-phosphate synthase large chain (carbamoyl-phosphate
           synthetase ammonia chain) protein [Ralstonia
           solanacearum IPO1609]
          Length = 1081

 Score = 72.8 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 31/222 (13%), Positives = 82/222 (36%), Gaps = 12/222 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQHLISPPYV 129
           LE   +P   +       + D+ R ++++   G+   P+         +     I  P V
Sbjct: 658 LEANGVPIIGTTPDMIDAAEDRERFQKLLHELGLRQPPNRTARAEDEALKLAEEIGYPLV 717

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++ + + +   + ++   ++   +L+++++ D IE     + D    
Sbjct: 718 VRPSYVLGGRAMEIVHEPRDLERYMREAVKVSNDSPVLLDRFLNDAIECDVDCLSDGKRV 777

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                +   +       +S  ++  + P  +      E++R      +A+   G+    F
Sbjct: 778 FIGGVMEHIEQAGV---HSGDSACSLPPYSLSQATVDELKRQTAAMAKALNVVGLMNVQF 834

Query: 249 LFDPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
                  +  V+ LE+N +   T     P ++   G S  ++
Sbjct: 835 AIQQKGGEDIVYVLEVNPRASRT----VPYVSKATGISLAKV 872



 Score = 60.1 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 49/285 (17%), Positives = 95/285 (33%), Gaps = 42/285 (14%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + GFKV  +              DV          V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGFKVVLVNSNPATIMTDPSTADVTYIEPITWEVVERIIAKERPDAILP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G    +  +      +L+   +    +   A   + D+ + K  ++  G+    S  
Sbjct: 89  TMGGQTALNCALDLHRHGVLQKYNVELIGASPEAIDKAEDRQKFKDAMTKIGLGSAKSGI 148

Query: 111 -------ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
                  + V             P VI+P       G  +    +       +    +  
Sbjct: 149 AHSLEEALAVQAQIARETGTSGYPIVIRPSFTLGGTGGGIAYNREEFEDICKRGLDLSPT 208

Query: 164 DQLLIEQYVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IP 220
           ++LLIE+ + G  E    V+ D   + +   ++   D           +S  V PA+ + 
Sbjct: 209 NELLIEESLLGWKEYEMEVVRDKKDNCIIVCSIENLDPMGIHT----GDSITVAPAQTLT 264

Query: 221 LDIYKEVQRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
              Y+ ++  +    + IG   G S   F  +P   ++  +E+N 
Sbjct: 265 DKEYQILRNASLAVLREIGVDTGGSNVQFSINPQDGRMIVIEMNP 309


>gi|159125032|gb|EDP50149.1| pyruvate carboxylase, putative [Aspergillus fumigatus A1163]
          Length = 1193

 Score = 72.8 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 84/221 (38%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
           ++H  +G   E+      +E   I +            DK+ ++Q+   CGVPV P    
Sbjct: 120 LIHPGYGFLSENAEFARKVENAGIVFVGPTPETIEALGDKVSARQLAIKCGVPVVPGTPG 179

Query: 112 LVNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
            V R+            P +IK   GG   G+ V++    +     +++S          
Sbjct: 180 PVERYEEVKAFTDTYGFPIIIKAAFGGGGRGMRVVRDQADLRDAFERATSEARSAFGNGT 239

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDI 223
           + +E+++D    +   ++GD   +V              ++        + PA  +P D+
Sbjct: 240 VFVERFLDRPKHIEVQLLGDNHGNVI-----HLFERDCSVQRRHQKVVEIAPAKDLPNDV 294

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              +   A    + +  R    ++FL D  +R  +++EIN 
Sbjct: 295 RDRILADAVKLAKTVNYRNAGTAEFLVDQQNR-YYFIEINP 334


>gi|145298890|ref|YP_001141731.1| methylcrotonoyl-CoA carboxylase alpha chain [Aeromonas salmonicida
           subsp. salmonicida A449]
 gi|142851662|gb|ABO89983.1| methylcrotonoyl-CoA carboxylase alpha chain [Aeromonas salmonicida
           subsp. salmonicida A449]
          Length = 661

 Score = 72.8 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 82/221 (37%), Gaps = 20/221 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+       E   + +      A     DK  +K ++ + GVPV P    
Sbjct: 82  AIHPGYGFLSENSDFATACEQRGVRFIGPSGAAILAMGDKSGAKSLMQAAGVPVLPGYHG 141

Query: 112 LVNRFTMDSQHLI--SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
              R  +  +  +    P +IK   GG   G+ ++++       L     ++      D 
Sbjct: 142 TDQRLELLREQALLTGLPLLIKAASGGGGKGMRLVEQIDEFDEALAAVKREALGAFGDDS 201

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDI 223
           +L+E+Y+     +   V  D+  +   +           L+          PA  IP  +
Sbjct: 202 VLLERYLPKARHVEVQVFADSLGNAIYL-----GDRDCSLQRRHQKVIEEAPAPDIPPSL 256

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + + + A  A +AI  RG    +FL      + F++E+N 
Sbjct: 257 RQAMGQAAVAAAKAIDYRGAGTIEFLL--CGDEFFFMEMNT 295


>gi|70994553|ref|XP_752054.1| pyruvate carboxylase [Aspergillus fumigatus Af293]
 gi|66849688|gb|EAL90016.1| pyruvate carboxylase, putative [Aspergillus fumigatus Af293]
          Length = 1193

 Score = 72.8 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 84/221 (38%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
           ++H  +G   E+      +E   I +            DK+ ++Q+   CGVPV P    
Sbjct: 120 LIHPGYGFLSENAEFARKVENAGIVFVGPTPETIEALGDKVSARQLAIKCGVPVVPGTPG 179

Query: 112 LVNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
            V R+            P +IK   GG   G+ V++    +     +++S          
Sbjct: 180 PVERYEEVKAFTDTYGFPIIIKAAFGGGGRGMRVVRDQADLRDAFERATSEARSAFGNGT 239

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDI 223
           + +E+++D    +   ++GD   +V              ++        + PA  +P D+
Sbjct: 240 VFVERFLDRPKHIEVQLLGDNHGNVI-----HLFERDCSVQRRHQKVVEIAPAKDLPNDV 294

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              +   A    + +  R    ++FL D  +R  +++EIN 
Sbjct: 295 RDRILADAVKLAKTVNYRNAGTAEFLVDQQNR-YYFIEINP 334


>gi|294632621|ref|ZP_06711181.1| lysine biosynthesis enzyme LysX [Streptomyces sp. e14]
 gi|292835954|gb|EFF94303.1| lysine biosynthesis enzyme LysX [Streptomyces sp. e14]
          Length = 289

 Score = 72.8 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 53/285 (18%), Positives = 107/285 (37%), Gaps = 33/285 (11%)

Query: 22  CASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQA--ILELLEIP- 78
             +ALE  G   + +D DR++   L    P     VL+        V A  + E      
Sbjct: 25  IFTALERRGVPYAAVD-DRTLISDLQAPPPVRYRGVLNRIMSHTRSVYATRLFESTGHRV 83

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTMDSQHLISPPYVIKPLKGG 136
           +  SG++   +  DK+ +   + + G+P   +++       + +   I  P V+KP  G 
Sbjct: 84  FNPSGVIE--VCGDKILTSLALVAAGLPTPRTVVAVTPDAALGAIEEIGYPAVVKPAVGS 141

Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWN--HGDQLLIEQYVD--GIELTCGVMGDASLDVTEI 192
               +  +    +    +    +          +++ +D  G ++   V+GD    V   
Sbjct: 142 WGRLMSKVNDRDAAETLVEHKQALRSPSHSVFYVQELIDKPGRDIRAIVLGDQ---VVAA 198

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
              +S+ +      ++       P +I  ++ K    LA  A +A+G   ++  D + + 
Sbjct: 199 VYRRSEHWIT----NTARGATTEPCEITPELAK----LALRAAEAVGGGMLA-VDLI-ER 248

Query: 253 LSRKVFWLEIN-VQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              +V   E+N           F  +AA  G    +LL+  V +A
Sbjct: 249 SDGEVLVTEVNHTM-------EFHGLAAATGLDIADLLVSHVLEA 286


>gi|229586965|ref|YP_002845466.1| Acetyl-CoA carboxylase, biotin carboxylase [Rickettsia africae
           ESF-5]
 gi|228022015|gb|ACP53723.1| Acetyl-CoA carboxylase, biotin carboxylase [Rickettsia africae
           ESF-5]
          Length = 665

 Score = 72.8 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 82/221 (37%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+     IL+   +              DK+ +K++    GV   P  + 
Sbjct: 81  AVHPGYGFLSENPNFANILKREGVVLIGPSAGTIKKMGDKIEAKKIAIEAGVSTVPGYMG 140

Query: 114 N----RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD-----LLQSSSWNHGD 164
                +  +D    I  P ++K   GG   G+ V+     +        L  ++S++  D
Sbjct: 141 TINDVKQAIDIAKEIGFPVIVKATAGGGGRGMRVVNNPAEMANAFESAKLEAANSFS-DD 199

Query: 165 QLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           +L IE+ +     +   ++ D   ++  +   +     +  K           + I  DI
Sbjct: 200 RLFIEKLIQTPRHIEIQLIADQYGNIVCLGERECSIQRHHQK----VIEEAPSSFITEDI 255

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +E+ R      Q +G       +F+ D  ++  ++LE+N 
Sbjct: 256 RQEMYRQVISLSQKVGYYSAGTVEFIVD-SNKNFYFLEMNT 295


>gi|153808133|ref|ZP_01960801.1| hypothetical protein BACCAC_02419 [Bacteroides caccae ATCC 43185]
 gi|149129036|gb|EDM20252.1| hypothetical protein BACCAC_02419 [Bacteroides caccae ATCC 43185]
          Length = 503

 Score = 72.8 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 82/220 (37%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       E   + +   G    A    K  +++++   G+P+ P    
Sbjct: 76  AIHPGYGFLSENADFARRCEEEGVIFIGPGADIIAKMGIKTEARKIMREAGLPIVPGTEA 135

Query: 114 N----RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN----HGDQ 165
                         +  P ++K L GG   G+ +++ ++ +   L  S S        D 
Sbjct: 136 PVQGIEEVKKVAKEVGYPIMLKALAGGGGKGMRLVRSEEEVEAALRLSQSEAGTSFGNDA 195

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+Y++    +   +MGD   +V  +   +        K             +  D  
Sbjct: 196 VYIEKYIENPHHIEVQIMGDKYGNVVHLGERECSIQRRNQK----VIEESPSPFVKEDTR 251

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K++ ++A  A + IG       +F+ D   +  ++LE+N 
Sbjct: 252 KKMLKVAVEACKRIGYYSAGTLEFMMDK-DQNFYFLEMNT 290


>gi|268610484|ref|ZP_06144211.1| carbamoyl phosphate synthase large subunit [Ruminococcus
           flavefaciens FD-1]
          Length = 1073

 Score = 72.8 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 50/277 (18%), Positives = 99/277 (35%), Gaps = 34/277 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL   G+++  +         D D              +  ++   +PD    
Sbjct: 29  SGTQACKALRQLGYEIVLVNSNPATIMTDPDVADITYIEPLNLERLTQIIEKERPDALLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G  G +   +     +L+   +      + A     D++  K  +S  G+ +  S +
Sbjct: 89  NLGGQSGLNLCSELDQAGVLKKYNVQVIGVQVDAIERGEDRIEFKNAMSELGIGMPKSEV 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     +  P V++P       G  ++     + +   +    +   Q+L+E+
Sbjct: 149 AYTVDEAVKIAEKLRYPVVLRPAYTMGGAGGGMVYNVDELKVVCARGLQASLVGQVLVEE 208

Query: 171 YVDG-IELTCGVMGDASL-DVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEV 227
            + G  EL   V+ DA    +T   +   D           +S    P   IP D+ KE+
Sbjct: 209 CIFGWEELELEVVRDAENNKITVCFIENIDPIGVHT----GDSFCSAPMLTIPEDVQKEL 264

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           Q +++   ++I   G     F  DP + ++  +EIN 
Sbjct: 265 QEMSYKIIESIEVIGGCNCQFARDPETGRIVVIEINP 301



 Score = 59.4 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 25/197 (12%), Positives = 69/197 (35%), Gaps = 10/197 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-SILVNRFTMDS-QHLISPPYV 129
           L+   +    +      L+ D+   + ++   G+P+    + VN     +  + I  P +
Sbjct: 648 LKKYGVNILGTTPETIDLAEDRDHFRAMMDKLGIPMPEAGMAVNADEAIAIANKIGYPVM 707

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLD 188
           ++P       G+ ++  D+ + + +  +        +LI+++++   E     + D +  
Sbjct: 708 VRPSYVLGGRGMEIVHDDEMMRVYMNAAVGVTPDRPILIDRFLNHATECEADAISDGTNC 767

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
                +   +           +S  +LPA  +       ++         +   G+   +
Sbjct: 768 FVPCVMEHIELAGVHS----GDSACILPAKNLTDKQVATIKEYTKKIAVEMNVCGL--MN 821

Query: 248 FLFDPLSRKVFWLEINV 264
             +      V+ LE N 
Sbjct: 822 MQYAIEGDTVYVLEANP 838


>gi|219556839|ref|ZP_03535915.1| acetyl-/propionyl-coenzyme A carboxylase subunit alpha
           [Mycobacterium tuberculosis T17]
 gi|260199994|ref|ZP_05767485.1| acetyl-/propionyl-CoA carboxylase alpha subunit accA2
           [Mycobacterium tuberculosis T46]
 gi|289442390|ref|ZP_06432134.1| acetyl-/propionyl-CoA carboxylase alpha subunit accA2
           [Mycobacterium tuberculosis T46]
 gi|289568946|ref|ZP_06449173.1| acetyl-/propionyl-CoA carboxylase alpha subunit accA2
           [Mycobacterium tuberculosis T17]
 gi|289415309|gb|EFD12549.1| acetyl-/propionyl-CoA carboxylase alpha subunit accA2
           [Mycobacterium tuberculosis T46]
 gi|289542700|gb|EFD46348.1| acetyl-/propionyl-CoA carboxylase alpha subunit accA2
           [Mycobacterium tuberculosis T17]
          Length = 667

 Score = 72.8 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 41/217 (18%), Positives = 82/217 (37%), Gaps = 21/217 (9%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
           +G   E+    A ++   + +    + A      K+ SK+++++ GVPV     +     
Sbjct: 80  YGFLSENAEFAAAVQEAGLTWVGPPVDAVRAMGSKIESKKLMAAAGVPV-----LEELDP 134

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQLLIEQYV-D 173
           D+      P ++K   GG   G+ V+ +  ++P ++  +            +  E+Y+  
Sbjct: 135 DAVTTAQLPVLVKASAGGGGRGMRVVHELSALPAEVEAARREAQSAFGDPTVFCERYLPT 194

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI---YKEVQRL 230
           G  +   VM D    V  +   +        K          P+ +   +     ++   
Sbjct: 195 GHHVEVQVMADTHGTVWAVGERECSIQRRHQK-----IIEEAPSPLVERVPGMRAKLFDA 249

Query: 231 AFLAHQAIGCRGISRSDFLFDPL---SRKVFWLEINV 264
           A LA  AIG  G    +FL D       + ++LE+N 
Sbjct: 250 ARLAASAIGYTGAGTVEFLADDSPGREGEFYFLEMNT 286


>gi|325678886|ref|ZP_08158484.1| diaminopimelate epimerase [Ruminococcus albus 8]
 gi|324109390|gb|EGC03608.1| diaminopimelate epimerase [Ruminococcus albus 8]
          Length = 1351

 Score = 72.8 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 50/288 (17%), Positives = 101/288 (35%), Gaps = 35/288 (12%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQIDVD---------------------RSVGLV 45
           G ++E + +   G     AL+  G +V  I+ +                      +V  V
Sbjct: 21  GQAAEFDYA---GTQACRALKQQGLEVILINSNPATIMTDNAMADKIYIEPLTLETVKRV 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   +PD   + L G  G    +Q      LE   +    +       + D+   K  + 
Sbjct: 78  IIKERPDSLLSTLGGQTGLTLSMQLAKEGFLEKYNVKLLGANPETIDKAEDRQLFKDTME 137

Query: 102 SCGVPVCPSILVNRFT----MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
           S G P  PS +VN         ++  I  P +I+P       G  ++  ++ +       
Sbjct: 138 SIGQPCIPSKVVNTVEDAVAFANEEGIGYPLIIRPAFTLGGTGGGIVNNEEELIEITRNG 197

Query: 158 SSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216
              +   Q+L+E+ + G  E+   VM D+  +V  I V   + +     ++  +      
Sbjct: 198 LYLSPITQVLVEKCIAGWKEIEFEVMRDSKGNV--ITVCSMENFDPVGVHTGDSIVIAPA 255

Query: 217 AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +    Y+ ++  A      +   G     F  +P + +   +E+N 
Sbjct: 256 VTLADKEYQMLRSAALKIIDTLKVEGGCNCQFALNPETFEYAVIEVNP 303



 Score = 61.3 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 41/289 (14%), Positives = 99/289 (34%), Gaps = 38/289 (13%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH---------GNFGEDG 66
           AL++ G+ V  +         D D +  L    L  +   N++             G+  
Sbjct: 580 ALKEHGYDVVIVNNNPETVSTDFDTADRLYFEPLTDEDVMNIIRVEKPAGVVVAFGGQTA 639

Query: 67  -LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHL 123
             +   L    +    +   +   + D+ R  +++    +       V      ++    
Sbjct: 640 IKLTKHLNENGVKILGTPPDSIDAAEDRERFDELLEELHIKRPEGFTVMTCEEALEVADR 699

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        +I+   +  I   +         + +LI++Y+ GIEL    + 
Sbjct: 700 IGYPVLMRPSYVLGGQNMIIAFNEADIKEYMAIILDQGIENPVLIDKYLMGIELEIDAIC 759

Query: 184 DAS---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIG 239
           D     +      + ++  +S        +S  V PA  +   +  +V   +     ++ 
Sbjct: 760 DGEDILIPGIMEHIERTGIHS-------GDSIAVYPAWNVSDRLIDKVVDCSKRLALSLK 812

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
            +G+    +L      +++ +E+N +   T     P ++   G    +L
Sbjct: 813 TKGLVNIQYLI--YEDELYVIEVNPRSSRT----IPYISKVTGVPMVDL 855


>gi|255036238|ref|YP_003086859.1| carbamoyl phosphate synthase large subunit [Dyadobacter fermentans
           DSM 18053]
 gi|254948994|gb|ACT93694.1| carbamoyl-phosphate synthase, large subunit [Dyadobacter fermentans
           DSM 18053]
          Length = 947

 Score = 72.8 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 42/291 (14%), Positives = 96/291 (32%), Gaps = 60/291 (20%)

Query: 11  EREVSLSSGKACASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGN 61
           E + S        +A ++AG++   +         D D S  L    +  +  F+++   
Sbjct: 583 EFDYSCV--HGVLAA-KEAGYETIMVNCNPETVSTDPDISDKLYFEPVFWEHVFDIIEHE 639

Query: 62  FGEDGLVQ-----AI-----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
             E  +VQ     A+     LE   I    +   +   + D+ R   ++   G+P     
Sbjct: 640 KPEGVIVQLGGQTALKMAEKLEKYGIKIIGTDFHSLDWAEDRGRFSSLLEELGIPFPKFG 699

Query: 112 LVNRFTMDSQ--HLISPPYVIKPLK--GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL 167
            V       +    +  P +++P    GG S+ I++   ++ +   +++       + +L
Sbjct: 700 TVRSSDAAVELSRSLGFPLLVRPSYVLGGQSMKIVI--NEKELEQHVVKILHDIPDNNIL 757

Query: 168 IEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA---------- 217
           ++ +++G                 +          E  Y      H+ PA          
Sbjct: 758 LDHFLEG----------------ALEAEADAICDGEDAYIIGVMEHIEPAGIHSGDSHAA 801

Query: 218 ----KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
                +  D  ++++        A+  +G+    F        V+ +E N 
Sbjct: 802 LPPFDLTADEIRQIEEHTRKIALAMNVKGLINVQFAV--KDGVVYVIEANP 850



 Score = 64.4 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 60/320 (18%), Positives = 105/320 (32%), Gaps = 49/320 (15%)

Query: 18  SGKACASALEDAGFKVS------------QIDVDRSVGLVLAH--------------LKP 51
           SG   A +L + G +V              I  D    L L                   
Sbjct: 29  SGSQAARSLREEGIEVVLINSNPATIMTDPISADHVYLLPLEKKYIVEILEKHKAMGRPI 88

Query: 52  DLAFNVLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV 107
           D     + G    +  +      I +  ++      I A   + D+ + +  +   GV V
Sbjct: 89  DAVLPTMGGQTALNLAIDCDKAGIWKKYDVDIIGVDIKAIETTEDREKFRLKMLELGVNV 148

Query: 108 CPSILVNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
           C       F    +    I  P VI+P       G   + K++     L      +   +
Sbjct: 149 CQGRTARSFLEGKEIAQEIGFPLVIRPSFTLGGTGGGFVDKEEDFDKALNYGLHASPVHE 208

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLD 222
           +L+EQ V G  E    ++ D+  +   I   ++    ++       +S  V PA  +P  
Sbjct: 209 VLVEQSVMGWKEYELELLRDSKGNFIIICSIEN----FDPMGVHTGDSITVAPAMTLPDT 264

Query: 223 IYKEVQRLAFLAHQAIG-CRGISRSDFLFDPLSRKVFWLEINV-------QPGMTPVSIF 274
           +Y++++ LA      IG   G     F  +P   K+  +EIN                  
Sbjct: 265 LYQQMRDLAIKMMNGIGKFAGGCNVQFSVNPADDKIIAIEINPRVSRSSALASKATGYPI 324

Query: 275 PEMAA--YAGYSFRELLLWM 292
            ++AA    GY   EL+  +
Sbjct: 325 AKIAAKMAIGYDLDELINPI 344


>gi|118470447|ref|YP_890857.1| pyruvate carboxylase [Mycobacterium smegmatis str. MC2 155]
 gi|118171734|gb|ABK72630.1| pyruvate carboxylase [Mycobacterium smegmatis str. MC2 155]
          Length = 1131

 Score = 72.8 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 37/247 (14%), Positives = 79/247 (31%), Gaps = 18/247 (7%)

Query: 28  DAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87
           + G  V        +  V  H   D  +   +G   E+  + A      I +        
Sbjct: 57  ETGHPVRAYLSVDEIIRVAKHSGADAIYPG-YGFLSENPELAAACHQAGIVFVGPRAHVL 115

Query: 88  ALSMDKMRSKQVVSSCGVPV----CPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIV 143
            L+ +K ++       G+PV     PS  V    + +   +  P  +K + GG   G+  
Sbjct: 116 ELTGNKFKAITAAREAGLPVLASSAPSANVAEL-VSAAEAMDFPLFVKAVSGGGGRGMRR 174

Query: 144 IKKDQSIPLDLLQS-----SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD 198
           + +  ++   +  +     S++      L +  ++   +   V+ D + ++         
Sbjct: 175 VTEPAALAESIEAASREAESAFGDPMVYLEQAVLNPRHIEVQVLADRTGEII-----HLF 229

Query: 199 FYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
                ++        + PA  +     + +   A    + I        +FL D     V
Sbjct: 230 ERDCSMQRRHQKVIELAPAPNLSDTQRQRICADAVSFARQIDYFCAGTVEFLLDERGHHV 289

Query: 258 FWLEINV 264
           F  E N 
Sbjct: 290 FI-ECNP 295


>gi|146305748|ref|YP_001186213.1| acetyl-CoA carboxylase biotin carboxylase subunit [Pseudomonas
           mendocina ymp]
 gi|145573949|gb|ABP83481.1| acetyl-CoA carboxylase, biotin carboxylase [Pseudomonas mendocina
           ymp]
          Length = 451

 Score = 72.8 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 79/222 (35%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         L  DK+ +K  +   GVPV P    
Sbjct: 79  AIHPGYGFLAENADFAEQVENSGFAFIGPKADVIRLMGDKVSAKDAMIKSGVPVVPGSDG 138

Query: 112 LVNRFTMDS---QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGD 164
            +     ++      +  P +IK   GG   G+ V+ K++ +         ++ +     
Sbjct: 139 PLPEDEEEALRIAREVGYPVIIKAAGGGGGRGMRVVHKEEDLIKSAKLTRTEAGAAFGNP 198

Query: 165 QLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLD 222
            + +E+++ +   +   V+ D   +   +           L+          PA +    
Sbjct: 199 MVYLEKFLGNPRHVEVQVLSDGQGNAIHLY-----DRDCSLQRRHQKVIEEAPAPLIDEK 253

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              EV +    A   IG RG    +FL+     + +++E+N 
Sbjct: 254 ARAEVLKRCVDACVEIGYRGAGTFEFLY--EDGRFYFIEMNT 293


>gi|94310580|ref|YP_583790.1| pyruvate carboxylase [Cupriavidus metallidurans CH34]
 gi|93354432|gb|ABF08521.1| pyruvate carboxylase [Cupriavidus metallidurans CH34]
          Length = 1167

 Score = 72.8 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 42/246 (17%), Positives = 89/246 (36%), Gaps = 25/246 (10%)

Query: 33  VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLV-QAILELLEIPYTHSGILASA 88
            + +D+   V  +    K D     +H  +G   E+    QA+++   I +         
Sbjct: 63  AAYLDI-EDVLRIARQAKVD----AIHPGYGFLSENPDFAQAVID-AGIRWIGPSPEVMR 116

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSLGIIVI 144
           +  +K+ ++    + GVPV P+       +         I  P ++K   GG   G+ V+
Sbjct: 117 MLGNKVAARNAAIAAGVPVMPATDPLPLDLAECKRLAAGIGYPLMLKASWGGGGRGMRVL 176

Query: 145 KKDQSIPLDLLQSSSWNH----GDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDF 199
           + +Q +   L  +          D++ +E+ V     +   ++GD     T   +     
Sbjct: 177 ESEQDLEPSLAAARREALAAFGNDEVYLEKLVRNARHVEVQILGD-----THGNLVHLHE 231

Query: 200 YSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
               ++  +       PA  +       +   A     A+G       +FL D  + K +
Sbjct: 232 RDCTVQRRNQKVIERAPAPYMDAAGRASLCDAALRLMGAVGYSHAGTVEFLMDADTNKFY 291

Query: 259 WLEINV 264
           ++E+N 
Sbjct: 292 FIEVNP 297


>gi|289773786|ref|ZP_06533164.1| pyruvate carboxylase [Streptomyces lividans TK24]
 gi|289703985|gb|EFD71414.1| pyruvate carboxylase [Streptomyces lividans TK24]
          Length = 1031

 Score = 72.8 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 38/216 (17%), Positives = 75/216 (34%), Gaps = 17/216 (7%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV----CPSILVN 114
           +G   E+  +    E   I +         L+ +K R+       GVPV     PS  V+
Sbjct: 95  YGFLSENPELARACEEAGITFVGPSARILELTGNKARAVAAAREAGVPVLGSSAPSTDVD 154

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQLLIEQ 170
              + +   +  P  +K + GG   G+  +++   +   +  +S           + +E+
Sbjct: 155 EL-VRAADDVGFPVFVKAVAGGGGRGMRRVEEPAQLREAIEAASREAASAFGDSTVFLEK 213

Query: 171 Y-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQ 228
             V+   +   ++ D   DV              ++        + PA  +   + + + 
Sbjct: 214 AVVEPRHIEVQILADCEGDVI-----HLFERDCSVQRRHQKVIELAPAPNLDPALRERIC 268

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             A    + IG R     +FL D     VF  E+N 
Sbjct: 269 ADAVNFARQIGYRNAGTVEFLVDRDGNHVFI-EMNP 303


>gi|254470106|ref|ZP_05083510.1| propionyl-CoA carboxylase alpha chain [Pseudovibrio sp. JE062]
 gi|211960417|gb|EEA95613.1| propionyl-CoA carboxylase alpha chain [Pseudovibrio sp. JE062]
          Length = 672

 Score = 72.8 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 32/202 (15%), Positives = 67/202 (33%), Gaps = 14/202 (6%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL----VNRFTMDSQHLISPP 127
           L+   I +      A  +  DK+ SK+  +   V   P  +               I  P
Sbjct: 97  LKQEGIVFIGPNPKAIEVMGDKITSKRFAADANVSTVPGYMGLIETPEDAKRIASEIGYP 156

Query: 128 YVIKPLKGGSSLGIIVIKKDQS----IPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVM 182
            +IK   GG   G+ +   D+           ++ S    D++ IE++++    +   VM
Sbjct: 157 VMIKASAGGGGKGMRIAWNDEEAMDGFDRAKSEAVSSFGDDRIFIEKFIENPRHIEIQVM 216

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
           GD   +   +   +        K             +  +  +++   A    +A+    
Sbjct: 217 GDKHGNAIYLGERECSIQRRNQK----VIEEAPSPLLDEETRRKMGEQAVALAKAVDYDS 272

Query: 243 ISRSDFLFDPLSRKVFWLEINV 264
               +F      +  ++LE+N 
Sbjct: 273 AGTVEF-VAGQDKSFYFLEMNT 293


>gi|83747767|ref|ZP_00944801.1| Carbamoyl-phosphate synthase large chain [Ralstonia solanacearum
           UW551]
 gi|83725539|gb|EAP72683.1| Carbamoyl-phosphate synthase large chain [Ralstonia solanacearum
           UW551]
          Length = 1038

 Score = 72.8 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 31/222 (13%), Positives = 82/222 (36%), Gaps = 12/222 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQHLISPPYV 129
           LE   +P   +       + D+ R ++++   G+   P+         +     I  P V
Sbjct: 615 LEANGVPIIGTTPDMIDAAEDRERFQKLLHELGLRQPPNRTARAEDEALKLAEEIGYPLV 674

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++ + + +   + ++   ++   +L+++++ D IE     + D    
Sbjct: 675 VRPSYVLGGRAMEIVHEPRDLERYMREAVKVSNDSPVLLDRFLNDAIECDVDCLSDGKRV 734

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                +   +       +S  ++  + P  +      E++R      +A+   G+    F
Sbjct: 735 FIGGVMEHIEQAGV---HSGDSACSLPPYSLSQATVDELKRQTAAMAKALNVVGLMNVQF 791

Query: 249 LFDPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
                  +  V+ LE+N +   T     P ++   G S  ++
Sbjct: 792 AIQQKGGEDIVYVLEVNPRASRT----VPYVSKATGISLAKV 829



 Score = 52.0 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 41/252 (16%), Positives = 87/252 (34%), Gaps = 23/252 (9%)

Query: 32  KVSQIDVD--RSVGLVLAHLKPDLAFNVLHGNFGEDGLV----QAILELLEIPYTHSGIL 85
            V+ I+      V  ++A  +PD     + G    +  +      +L+   +    +   
Sbjct: 19  DVTYIEPITWEVVERIIAKERPDAILPTMGGQTALNCALDLHRHGVLQKYNVELIGASPE 78

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPS---------ILVNRFTMDSQHLISPPYVIKPLKGG 136
           A   + D+ + K  ++  G+    S         + V             P VI+P    
Sbjct: 79  AIDKAEDRQKFKDAMTKIGLGSAKSGIAHSLEEALAVQAQIARETGTSGYPIVIRPSFTL 138

Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLD-VTEIAV 194
              G  +    +       +    +  ++LLIE+ + G  E    V+ D   + +   ++
Sbjct: 139 GGTGGGIAYNREEFEDICKRGLDLSPTNELLIEESLLGWKEYEMEVVRDKKDNCIIVCSI 198

Query: 195 PKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGC-RGISRSDFLFDP 252
              D           +S  V PA+ +    Y+ ++  +    + IG   G S   F  +P
Sbjct: 199 ENLDPMGIHT----GDSITVAPAQTLTDKEYQILRNASLAVLREIGVDTGGSNVQFSINP 254

Query: 253 LSRKVFWLEINV 264
              ++  +E+N 
Sbjct: 255 QDGRMIVIEMNP 266


>gi|257064024|ref|YP_003143696.1| carbamoyl-phosphate synthase large subunit [Slackia
           heliotrinireducens DSM 20476]
 gi|256791677|gb|ACV22347.1| carbamoyl-phosphate synthase large subunit [Slackia
           heliotrinireducens DSM 20476]
          Length = 1093

 Score = 72.8 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 49/319 (15%), Positives = 108/319 (33%), Gaps = 52/319 (16%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG      L++ G++V  +         D                V  ++A  +PD    
Sbjct: 29  SGTQACKVLQEEGYEVVLVNSNPATIMTDPQLADRTYVEPITPEFVEKIIAKERPDALLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--S 110
            + G  G +  V+     +L+   +      + A     D+    + +   G+       
Sbjct: 89  TIGGQTGLNTAVELAKSGVLDKYGVEMIGCDLDAIERGEDRKLFAEAMEEIGLECARSGY 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  ++    I  P V++P       G  +   ++ +   + Q    +  +++L+E+
Sbjct: 149 AYSVEDAVELSKSIGFPLVLRPSFTLGGAGGGIAYDEKQLREIVAQGLELSPANEVLVEE 208

Query: 171 YVDG-IELTCGVMGDASL-DVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            + G  E    VM D +   +   ++   D           +S  V PA+ +    Y+ +
Sbjct: 209 SIIGWKEYEMEVMRDRAGNGIIVCSIENFDAMGVHT----GDSITVAPAQTLSDVEYQRM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV-----------QPGMTPVSIFP 275
           +  +    + +G   G S   F  +P + ++  +E+N              G        
Sbjct: 265 RVASLAILEKVGVETGGSNVQFALNPDNGRLIVIEMNPRVSRSSALASKATGF----PIA 320

Query: 276 EMAA--YAGYSFRELLLWM 292
           + AA    GY+  E++  +
Sbjct: 321 KAAARLAVGYTLDEIINDI 339



 Score = 50.1 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 23/192 (11%), Positives = 66/192 (34%), Gaps = 8/192 (4%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGV--PVCPSILVNRFTMDSQHLISPPYVIKPL 133
            +P   +   A  L+ D+ R   ++    +  P           +     I  P +++P 
Sbjct: 667 GVPIMGTQPEAIDLAEDRERFSAILDELKIIYPAAGMATSYEEALKVASRIGFPLLVRPS 726

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEI 192
                 G+ +    Q++   + ++   +    + ++ Y++ G E     + D        
Sbjct: 727 YVLGGRGMFISYNPQTLETYMAEAMRVSPDHPVYLDHYLEGGYECDVDALCDGEDVYIGG 786

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            +   +       +S  ++T + P      I  +++ +       +G +G+    +    
Sbjct: 787 VLEHIEEAGI---HSGDSATCIPPFSFSDRIVNQLRSITRQLALRLGVKGLINVQYAI-- 841

Query: 253 LSRKVFWLEINV 264
            +  ++ +E N 
Sbjct: 842 KNDTIYVIEANP 853


>gi|108803106|ref|YP_643043.1| phosphoribosylaminoimidazole carboxylase [Rubrobacter xylanophilus
           DSM 9941]
 gi|108764349|gb|ABG03231.1| phosphoribosylaminoimidazole carboxylase [Rubrobacter xylanophilus
           DSM 9941]
          Length = 388

 Score = 72.8 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 44/209 (21%), Positives = 84/209 (40%), Gaps = 21/209 (10%)

Query: 65  DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL- 123
           D  V  +LE     Y   G      +  ++R K+ V   GV V P   V         L 
Sbjct: 81  DAGVAGMLE--REAYVPQGSRLLHTTQHRLREKRAVEEAGVRVAPYEPVRDGEDLRAALR 138

Query: 124 -ISPPYVIKPLKGG-SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
            +  P V+K   GG    G  VI+ +   P  L + S    G +L++E++V         
Sbjct: 139 RLGTPCVLKTATGGYDGRGQRVIRSEDEAPAALSELS--GEGTELVLERFVR-------- 188

Query: 182 MGDASLDVTEIAVPKSDFYSYE-LKYSSLNSTH---VLPAKIPLDIYKEVQRLAFLAHQA 237
             +  L V     P  +  ++   +   +++     ++PA+IP ++ +E +R+A    + 
Sbjct: 189 -FEKELSVIAARTPGGEVRTFPPAENVHVDNILHLSIVPARIPREVQEEARRMAVRVAEG 247

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQP 266
           +G  G+   +  +      ++  E+  +P
Sbjct: 248 LGVVGLVAVEMFWAGGDG-LYVNELAPRP 275


>gi|15610104|ref|NP_217483.1| pyruvate carboxylase [Mycobacterium tuberculosis H37Rv]
 gi|15842520|ref|NP_337557.1| pyruvate carboxylase [Mycobacterium tuberculosis CDC1551]
 gi|31794143|ref|NP_856636.1| pyruvate carboxylase [Mycobacterium bovis AF2122/97]
 gi|121638848|ref|YP_979072.1| pyruvate carboxylase [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|148662815|ref|YP_001284338.1| pyruvate carboxylase [Mycobacterium tuberculosis H37Ra]
 gi|148824157|ref|YP_001288911.1| pyruvate carboxylase [Mycobacterium tuberculosis F11]
 gi|215404942|ref|ZP_03417123.1| pyruvate carboxylase [Mycobacterium tuberculosis 02_1987]
 gi|215428417|ref|ZP_03426336.1| pyruvate carboxylase [Mycobacterium tuberculosis T92]
 gi|215431916|ref|ZP_03429835.1| pyruvate carboxylase [Mycobacterium tuberculosis EAS054]
 gi|215447234|ref|ZP_03433986.1| pyruvate carboxylase [Mycobacterium tuberculosis T85]
 gi|218754727|ref|ZP_03533523.1| pyruvate carboxylase [Mycobacterium tuberculosis GM 1503]
 gi|219558997|ref|ZP_03538073.1| pyruvate carboxylase [Mycobacterium tuberculosis T17]
 gi|224991340|ref|YP_002646029.1| pyruvate carboxylase [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253797941|ref|YP_003030942.1| pyruvate carboxylase pca [Mycobacterium tuberculosis KZN 1435]
 gi|254233054|ref|ZP_04926381.1| pyruvate carboxylase pca [Mycobacterium tuberculosis C]
 gi|254365604|ref|ZP_04981649.1| pyruvate carboxylase pca [Mycobacterium tuberculosis str. Haarlem]
 gi|254552044|ref|ZP_05142491.1| pyruvate carboxylase [Mycobacterium tuberculosis '98-R604
           INH-RIF-EM']
 gi|260202108|ref|ZP_05769599.1| pyruvate carboxylase [Mycobacterium tuberculosis T46]
 gi|260206290|ref|ZP_05773781.1| pyruvate carboxylase [Mycobacterium tuberculosis K85]
 gi|289444530|ref|ZP_06434274.1| pyruvate carboxylase [Mycobacterium tuberculosis T46]
 gi|289553243|ref|ZP_06442453.1| pyruvate carboxylase pca [Mycobacterium tuberculosis KZN 605]
 gi|289571164|ref|ZP_06451391.1| pyruvate carboxylase pca [Mycobacterium tuberculosis T17]
 gi|289575674|ref|ZP_06455901.1| pyruvate carboxylase pca [Mycobacterium tuberculosis K85]
 gi|289746765|ref|ZP_06506143.1| pyruvate carboxylase [Mycobacterium tuberculosis 02_1987]
 gi|289751643|ref|ZP_06511021.1| pyruvate carboxylase pca [Mycobacterium tuberculosis T92]
 gi|289755083|ref|ZP_06514461.1| pyruvate carboxylase pca [Mycobacterium tuberculosis EAS054]
 gi|289759092|ref|ZP_06518470.1| pyruvate carboxylase [Mycobacterium tuberculosis T85]
 gi|289763146|ref|ZP_06522524.1| pyruvate carboxylase pca [Mycobacterium tuberculosis GM 1503]
 gi|297635590|ref|ZP_06953370.1| pyruvate carboxylase [Mycobacterium tuberculosis KZN 4207]
 gi|297732588|ref|ZP_06961706.1| pyruvate carboxylase [Mycobacterium tuberculosis KZN R506]
 gi|306777258|ref|ZP_07415595.1| pyruvate carboxylase pca [Mycobacterium tuberculosis SUMu001]
 gi|306785807|ref|ZP_07424129.1| pyruvate carboxylase pca [Mycobacterium tuberculosis SUMu003]
 gi|306794659|ref|ZP_07432961.1| pyruvate carboxylase pca [Mycobacterium tuberculosis SUMu005]
 gi|306808941|ref|ZP_07445609.1| pyruvate carboxylase pca [Mycobacterium tuberculosis SUMu007]
 gi|306969039|ref|ZP_07481700.1| pyruvate carboxylase pca [Mycobacterium tuberculosis SUMu009]
 gi|306973376|ref|ZP_07486037.1| pyruvate carboxylase pca [Mycobacterium tuberculosis SUMu010]
 gi|307081084|ref|ZP_07490254.1| pyruvate carboxylase pca [Mycobacterium tuberculosis SUMu011]
 gi|307085686|ref|ZP_07494799.1| pyruvate carboxylase pca [Mycobacterium tuberculosis SUMu012]
 gi|313659920|ref|ZP_07816800.1| pyruvate carboxylase [Mycobacterium tuberculosis KZN V2475]
 gi|1694864|emb|CAB05410.1| PROBABLE PYRUVATE CARBOXYLASE PCA (PYRUVIC CARBOXYLASE)
           [Mycobacterium tuberculosis H37Rv]
 gi|13882829|gb|AAK47371.1| pyruvate carboxylase [Mycobacterium tuberculosis CDC1551]
 gi|31619738|emb|CAD96678.1| PROBABLE PYRUVATE CARBOXYLASE PCA (PYRUVIC CARBOXYLASE)
           [Mycobacterium bovis AF2122/97]
 gi|121494496|emb|CAL72977.1| Probable pyruvate carboxylase pca [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|124602113|gb|EAY61123.1| pyruvate carboxylase pca [Mycobacterium tuberculosis C]
 gi|134151117|gb|EBA43162.1| pyruvate carboxylase pca [Mycobacterium tuberculosis str. Haarlem]
 gi|148506967|gb|ABQ74776.1| pyruvate carboxylase [Mycobacterium tuberculosis H37Ra]
 gi|148722684|gb|ABR07309.1| pyruvate carboxylase pca [Mycobacterium tuberculosis F11]
 gi|224774455|dbj|BAH27261.1| pyruvate carboxylase [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253319444|gb|ACT24047.1| pyruvate carboxylase pca [Mycobacterium tuberculosis KZN 1435]
 gi|289417449|gb|EFD14689.1| pyruvate carboxylase [Mycobacterium tuberculosis T46]
 gi|289437875|gb|EFD20368.1| pyruvate carboxylase pca [Mycobacterium tuberculosis KZN 605]
 gi|289540105|gb|EFD44683.1| pyruvate carboxylase pca [Mycobacterium tuberculosis K85]
 gi|289544918|gb|EFD48566.1| pyruvate carboxylase pca [Mycobacterium tuberculosis T17]
 gi|289687293|gb|EFD54781.1| pyruvate carboxylase [Mycobacterium tuberculosis 02_1987]
 gi|289692230|gb|EFD59659.1| pyruvate carboxylase pca [Mycobacterium tuberculosis T92]
 gi|289695670|gb|EFD63099.1| pyruvate carboxylase pca [Mycobacterium tuberculosis EAS054]
 gi|289710652|gb|EFD74668.1| pyruvate carboxylase pca [Mycobacterium tuberculosis GM 1503]
 gi|289714656|gb|EFD78668.1| pyruvate carboxylase [Mycobacterium tuberculosis T85]
 gi|308214404|gb|EFO73803.1| pyruvate carboxylase pca [Mycobacterium tuberculosis SUMu001]
 gi|308329583|gb|EFP18434.1| pyruvate carboxylase pca [Mycobacterium tuberculosis SUMu003]
 gi|308337072|gb|EFP25923.1| pyruvate carboxylase pca [Mycobacterium tuberculosis SUMu005]
 gi|308344721|gb|EFP33572.1| pyruvate carboxylase pca [Mycobacterium tuberculosis SUMu007]
 gi|308353397|gb|EFP42248.1| pyruvate carboxylase pca [Mycobacterium tuberculosis SUMu009]
 gi|308357273|gb|EFP46124.1| pyruvate carboxylase pca [Mycobacterium tuberculosis SUMu010]
 gi|308361286|gb|EFP50137.1| pyruvate carboxylase pca [Mycobacterium tuberculosis SUMu011]
 gi|308364803|gb|EFP53654.1| pyruvate carboxylase pca [Mycobacterium tuberculosis SUMu012]
 gi|323718440|gb|EGB27613.1| pyruvate carboxylase pca [Mycobacterium tuberculosis CDC1551A]
 gi|326904581|gb|EGE51514.1| pyruvate carboxylase pca [Mycobacterium tuberculosis W-148]
 gi|328457716|gb|AEB03139.1| pyruvate carboxylase pca [Mycobacterium tuberculosis KZN 4207]
          Length = 1127

 Score = 72.8 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 38/247 (15%), Positives = 82/247 (33%), Gaps = 18/247 (7%)

Query: 28  DAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87
           D G  V        +         D  +   +G   E+  + A      I +        
Sbjct: 53  DIGHPVHAYLSVDEIVATARRAGADAIYPG-YGFLSENPDLAAACAAAGISFVGPSAEVL 111

Query: 88  ALSMDKMRSKQVVSSCGVPV----CPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIV 143
            L+ +K R+       G+PV     PS  V+   +     +  P  +K + GG   G+  
Sbjct: 112 ELAGNKSRAIAAAREAGLPVLMSSAPSASVDEL-LSVAAGMPFPLFVKAVAGGGGRGMRR 170

Query: 144 IKKDQSIPLDLLQS-----SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD 198
           +    ++P  +  +     S++      L +  ++   +   ++ D   DV  +      
Sbjct: 171 VGDIAALPEAIEAASREAESAFGDPTVYLEQAVINPRHIEVQILADNLGDVIHLYE---- 226

Query: 199 FYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
                ++        + PA  +  ++  ++   A    + IG       +FL D    + 
Sbjct: 227 -RDCSVQRRHQKVIELAPAPHLDAELRYKMCVDAVAFARHIGYSCAGTVEFLLDER-GEY 284

Query: 258 FWLEINV 264
            ++E+N 
Sbjct: 285 VFIEMNP 291


>gi|322513756|ref|ZP_08066844.1| acetyl-CoA carboxylase, biotin carboxylase [Actinobacillus ureae
           ATCC 25976]
 gi|322120429|gb|EFX92352.1| acetyl-CoA carboxylase, biotin carboxylase [Actinobacillus ureae
           ATCC 25976]
          Length = 447

 Score = 72.8 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 39/222 (17%), Positives = 80/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         L  DK+ +   +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAEQVENSGFTFIGPTADVIRLMGDKVSAINAMKKAGVPCVPGSDG 136

Query: 112 ---LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
                     +    I  P +IK   GG   G+ V+  ++ +   +     ++ +  + +
Sbjct: 137 PVGNDPVKNKEIAKRIGYPVIIKASGGGGGRGMRVVYNEKDLEESIAMTKAEAKAAFNNN 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+Y++    +   V+ D   +   +A           K          PA  I  +
Sbjct: 197 MVYMEKYLENPRHIEIQVLADTHGNAVYLAERDCSMQRRHQK-----VVEEAPAPGITPE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + K +      A + IG RG    +FLF   + + +++E+N 
Sbjct: 252 LRKFIGERCANACREIGYRGAGTFEFLF--ENGEFYFIEMNT 291


>gi|306789847|ref|ZP_07428169.1| putative pyruvate carboxylase [Mycobacterium tuberculosis SUMu004]
 gi|308333674|gb|EFP22525.1| putative pyruvate carboxylase [Mycobacterium tuberculosis SUMu004]
          Length = 757

 Score = 72.5 bits (177), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 38/247 (15%), Positives = 82/247 (33%), Gaps = 18/247 (7%)

Query: 28  DAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87
           D G  V        +         D  +   +G   E+  + A      I +        
Sbjct: 53  DIGHPVHAYLSVDEIVATARRAGADAIYPG-YGFLSENPDLAAACAAAGISFVGPSAEVL 111

Query: 88  ALSMDKMRSKQVVSSCGVPV----CPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIV 143
            L+ +K R+       G+PV     PS  V+   +     +  P  +K + GG   G+  
Sbjct: 112 ELAGNKSRAIAAAREAGLPVLMSSAPSASVDEL-LSVAAGMPFPLFVKAVAGGGGRGMRR 170

Query: 144 IKKDQSIPLDLLQS-----SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD 198
           +    ++P  +  +     S++      L +  ++   +   ++ D   DV  +      
Sbjct: 171 VGDIAALPEAIEAASREAESAFGDPTVYLEQAVINPRHIEVQILADNLGDVIHLYE---- 226

Query: 199 FYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
                ++        + PA  +  ++  ++   A    + IG       +FL D    + 
Sbjct: 227 -RDCSVQRRHQKVIELAPAPHLDAELRYKMCVDAVAFARHIGYSCAGTVEFLLDER-GEY 284

Query: 258 FWLEINV 264
            ++E+N 
Sbjct: 285 VFIEMNP 291


>gi|300173172|ref|YP_003772338.1| carbamoyl-phosphate synthase pyrimidine-specific large subunit
           [Leuconostoc gasicomitatum LMG 18811]
 gi|299887551|emb|CBL91519.1| Carbamoyl-phosphate synthase pyrimidine-specific large chain
           [Leuconostoc gasicomitatum LMG 18811]
          Length = 1059

 Score = 72.5 bits (177), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 48/286 (16%), Positives = 102/286 (35%), Gaps = 33/286 (11%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQIDVDRS---------------------VGLV 45
           G ++E + S   G   A +L++ G+ V  ++ + +                     +  +
Sbjct: 21  GQAAEFDYS---GTQAALSLKEEGYYVILVNSNPATIMTDAEIADKVYIEPLSIDFIERI 77

Query: 46  LAHLKPDLAFNVLHGNFG----EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           L   +PD     L G  G    +D     IL+ L I    + + A   + D+   K ++ 
Sbjct: 78  LRKERPDAILPTLGGQTGLNMAKDLSEAGILDDLNIELLGTKLSAIEEAEDREEFKALME 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
               P+  S +       ++     S P +++P       G  + +  + +         
Sbjct: 138 RLNEPIPESTIATTLEEALEFADTHSYPVIVRPAYTLGGTGGGIAETHEELTEIAANGLE 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   Q+LIE+ + G  E+   VM DA  +   + V   + +     ++  +        
Sbjct: 198 LSPVTQVLIERSIAGYKEIEFEVMRDAHDNA--LVVASMENFDPVGIHTGDSIVTAPVQT 255

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +     + ++  A    +A+   G        DP S K + +E+N 
Sbjct: 256 LSDREVQMMRDAALKIIRALKIEGGVNIQMALDPNSYKYYIIEVNP 301



 Score = 64.4 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/192 (14%), Positives = 67/192 (34%), Gaps = 9/192 (4%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--FTMDSQHLISPPYVIKPL 133
            +    + +     + D+    QV+    +P             + +   I  P +I+P 
Sbjct: 650 GVHILGTTVEDLNRAEDREAFDQVIKQLKLPQPIGKTATTVPGALAAAQEIGYPVLIRPS 709

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
                  + ++  D+ +   + ++   ++   +LI+ Y+ G E    V+ D    V    
Sbjct: 710 YVLGGRAMEIVTSDEELNDYMQRAVKVSNDHPVLIDSYLVGQEAEVDVLSDGETVVIPGI 769

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
           +   +           +S  V P + +   +  E+ + A    QA+   G+    F+   
Sbjct: 770 MEHIERAGVHS----GDSMSVYPPQYLSQKVQDEMTQAAINLAQAMNTIGLMNVQFVIHE 825

Query: 253 LSRKVFWLEINV 264
                + +E+N 
Sbjct: 826 --NTAYVIEVNP 835


>gi|226324796|ref|ZP_03800314.1| hypothetical protein COPCOM_02583 [Coprococcus comes ATCC 27758]
 gi|225207244|gb|EEG89598.1| hypothetical protein COPCOM_02583 [Coprococcus comes ATCC 27758]
          Length = 1066

 Score = 72.5 bits (177), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 36/225 (16%), Positives = 83/225 (36%), Gaps = 13/225 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTMDSQHLISPPYV 129
           L  + +P   +       + D+    ++++ C +P      +       +  + +  P +
Sbjct: 647 LMKMGVPILGTSAEDVDAAEDRELFDEILAQCNIPRPKGDTVFTAEEAKEVANRLGYPVL 706

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           ++P       G+ +   D  I   +   +       +L+++Y+ G E+      DA  D 
Sbjct: 707 VRPSYVLGGQGMQIAINDHDIDEFIGIINRIAQDHPILVDKYLVGKEIEV----DAVCDG 762

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           T+I +P    +       S +S  V PA+ I     ++++       +A+   G+    F
Sbjct: 763 TDILIPGIMEHIERAGIHSGDSISVYPAQSISEVTKRKIEEYTKRLAKALHVIGMINIQF 822

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +       V+ +E+N +   T     P ++   G     L    +
Sbjct: 823 IV--CGEDVYVIEVNPRSSRT----VPYISKVTGIPIVPLATRAI 861



 Score = 59.0 bits (142), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 44/286 (15%), Positives = 98/286 (34%), Gaps = 33/286 (11%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQID-------VDRSVG--------------LV 45
           G ++E + +   G     +L++ G +V  ++        D+ +                +
Sbjct: 21  GQAAEFDYA---GTQACRSLKEEGLEVVLLNSNPATIMTDKDIADRVYIEPLTVEVVEQL 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   KPD     L G  G +  ++      L+   +    +       + D++  K  + 
Sbjct: 78  ILKEKPDSVLPTLGGQAGLNLAMELEEAGFLKEHNVRLIGTTAETIKKAEDRLEFKDTME 137

Query: 102 SCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G PV  S++V      +     I  P V++P       G  +    + +   L     
Sbjct: 138 KIGEPVAASLVVENIEDGVAFADKIGYPVVLRPAYTLGGSGGGIAHDQEQLEEILENGLR 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   Q+L+E+ + G  E+   VM D++ +   I V   +       ++  +        
Sbjct: 198 LSRVGQVLVERCIAGWKEIEYEVMRDSAGN--CITVCNMENIDPVGVHTGDSIVVAPSQT 255

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +    Y+ ++  A      +   G     +   P S +   +E+N 
Sbjct: 256 LGDKEYQMLRTSALNIITELNITGGCNVQYALHPDSFEYCVIEVNP 301


>gi|215412810|ref|ZP_03421522.1| pyruvate carboxylase [Mycobacterium tuberculosis 94_M4241A]
 gi|298526437|ref|ZP_07013846.1| pyruvate carboxylase [Mycobacterium tuberculosis 94_M4241A]
 gi|298496231|gb|EFI31525.1| pyruvate carboxylase [Mycobacterium tuberculosis 94_M4241A]
          Length = 1127

 Score = 72.5 bits (177), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 38/247 (15%), Positives = 82/247 (33%), Gaps = 18/247 (7%)

Query: 28  DAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87
           D G  V        +         D  +   +G   E+  + A      I +        
Sbjct: 53  DIGHPVHAYLSVDEIVATARRAGADAIYPG-YGFLSENPDLAAACAAAGISFVGPSAEVL 111

Query: 88  ALSMDKMRSKQVVSSCGVPV----CPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIV 143
            L+ +K R+       G+PV     PS  V+   +     +  P  +K + GG   G+  
Sbjct: 112 ELAGNKSRAIAAAREAGLPVLMSSAPSASVDEL-LSVAAGMPFPLFVKAVAGGGGRGMRR 170

Query: 144 IKKDQSIPLDLLQS-----SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD 198
           +    ++P  +  +     S++      L +  ++   +   ++ D   DV  +      
Sbjct: 171 VGDIAALPEAIEAASREAESAFGDPTVYLEQAVINPRHIEVQILADNLGDVIHLYE---- 226

Query: 199 FYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
                ++        + PA  +  ++  ++   A    + IG       +FL D    + 
Sbjct: 227 -RDCSVQRRHQKVIELAPAPHLDAELRYKMCVDAVAFARHIGYSCAGTVEFLLDER-GEY 284

Query: 258 FWLEINV 264
            ++E+N 
Sbjct: 285 VFIEMNP 291


>gi|294146568|ref|YP_003559234.1| putative allophanate hydrolase subunit 2/urea carboxylase
           [Sphingobium japonicum UT26S]
 gi|292676985|dbj|BAI98502.1| putative allophanate hydrolase subunit 2/urea carboxylase
           [Sphingobium japonicum UT26S]
          Length = 1198

 Score = 72.5 bits (177), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 76/220 (34%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+           I +             K  ++ + ++ GVP+ P    
Sbjct: 78  AIHPGYGFLAENVEFAEACAAAGIVFIGPTPDNIRTFGLKHSARALAAAHGVPLAPGTDL 137

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQL 166
           +        +   I  P ++K   GG  +G+ + + +  +       +           +
Sbjct: 138 LTDEEEAAAAARAIGFPVILKATAGGGGIGMRICEDEGDVREGFAAVARQGQSNFGDAGI 197

Query: 167 LIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIY 224
            +E+Y+     +   + GD    V  +           L+  +       PA + P  + 
Sbjct: 198 FLERYIRRARHIEVQLFGDGEGRVMPLGE-----RDCSLQRRNQKVVEESPAPLLPPAVR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +++   A    QA   R     +FL+D   ++ F+LE+N 
Sbjct: 253 RDLIAAATRLGQAARYRSAGTVEFLYDAERQQFFFLEMNT 292


>gi|215402776|ref|ZP_03414957.1| acetyl-/propionyl-coenzyme A carboxylase subunit alpha
           [Mycobacterium tuberculosis 02_1987]
 gi|289744704|ref|ZP_06504082.1| biotin carboxylase + biotin carboxyl carrier protein [Mycobacterium
           tuberculosis 02_1987]
 gi|289685232|gb|EFD52720.1| biotin carboxylase + biotin carboxyl carrier protein [Mycobacterium
           tuberculosis 02_1987]
          Length = 667

 Score = 72.5 bits (177), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 41/217 (18%), Positives = 82/217 (37%), Gaps = 21/217 (9%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
           +G   E+    A ++   + +    + A      K+ SK+++++ GVPV     +     
Sbjct: 80  YGFLSENAEFAAAVQEAGLTWVGPPVDAVRAMGSKIESKKLMAAAGVPV-----LEELDP 134

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQLLIEQYV-D 173
           D+      P ++K   GG   G+ V+ +  ++P ++  +            +  E+Y+  
Sbjct: 135 DAVTTAQLPVLVKASAGGGGRGMRVVHELSALPAEVEAARREAQSAFGDPTVFCERYLPT 194

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI---YKEVQRL 230
           G  +   VM D    V  +   +        K          P+ +   +     ++   
Sbjct: 195 GHHVEVQVMADTHGTVWAVGERECSIQRRHQK-----IIEEAPSPLVERVPGMRAKLFDA 249

Query: 231 AFLAHQAIGCRGISRSDFLFDPL---SRKVFWLEINV 264
           A LA  AIG  G    +FL D       + ++LE+N 
Sbjct: 250 ARLAASAIGYTGAGTVEFLADDSPGREGEFYFLEMNT 286


>gi|145589096|ref|YP_001155693.1| acetyl-CoA carboxylase, biotin carboxylase [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
 gi|145047502|gb|ABP34129.1| acetyl-CoA carboxylase, biotin carboxylase [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
          Length = 678

 Score = 72.5 bits (177), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 72/220 (32%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+       E   I +      + A   DK+ SK++     V   P    
Sbjct: 81  AVHPGYGFLSENEQFAKRCEEEGIVFIGPKHQSIAAMGDKIASKKLALEAKVNTIPGYNE 140

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
            I      +     I  P +IK   GG   G+ V   D+          +        D+
Sbjct: 141 AIDTTEEAVKIAQGIGYPVMIKASAGGGGKGLRVAFNDKEAAEGFAACKTEAMNSFGDDR 200

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE++V+G   +   V+GD+  +V  +            K             I     
Sbjct: 201 IFIEKFVEGPRHIEIQVLGDSQGNVVYLNERDCSIQRRHQK----VIEEAPSPFIDPATR 256

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K +   A    +A+  +     +F      +  ++LE+N 
Sbjct: 257 KAMGEQAVALAKAVNYQSAGTVEF-VVGKDKSFYFLEMNT 295


>gi|319902021|ref|YP_004161749.1| formate-dependent phosphoribosylglycinamide formyltransferase
           [Bacteroides helcogenes P 36-108]
 gi|319417052|gb|ADV44163.1| formate-dependent phosphoribosylglycinamide formyltransferase
           [Bacteroides helcogenes P 36-108]
          Length = 388

 Score = 72.5 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 48/253 (18%), Positives = 86/253 (33%), Gaps = 37/253 (14%)

Query: 33  VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
            S +D D ++  V+   +PD+    +     E         L +       ++ SA +++
Sbjct: 48  FSMLDGD-ALDRVVRRHRPDIIVPEIEAIRTE--------RLYDFEKEGIQVVPSARAVN 98

Query: 93  -----KMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVIK 145
                K          G+                +   I  P V+KPL   S  G  ++K
Sbjct: 99  FTMNRKEIRDLAAKELGLKTAKYFYAKSLDELKSAAGKIGFPCVVKPLMSSSGKGQSLVK 158

Query: 146 KDQSIPLDLLQSSSWNHGD--QLLIEQYVDGIE----LTCGVMGDASLDVTEIA-VPKSD 198
               +        + + GD  +L+IE+++        LT       +L    I  V K  
Sbjct: 159 SADELEHAWEYGCNGSRGDIKELIIEEFIKFDSEITLLTVTQKNGPTLFCPPIGHVQKGG 218

Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
            Y               PA I     KE Q +A    +A+   G+   +F     +  V+
Sbjct: 219 DY----------RESFQPAHIDSAHLKEAQGMAEKVTRALTGAGLWGVEFFLSHENG-VY 267

Query: 259 WLEINVQP---GM 268
           + E++ +P   GM
Sbjct: 268 FSELSPRPHDTGM 280


>gi|256789905|ref|ZP_05528336.1| pyruvate carboxylase [Streptomyces lividans TK24]
          Length = 1019

 Score = 72.5 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 38/216 (17%), Positives = 75/216 (34%), Gaps = 17/216 (7%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV----CPSILVN 114
           +G   E+  +    E   I +         L+ +K R+       GVPV     PS  V+
Sbjct: 83  YGFLSENPELARACEEAGITFVGPSARILELTGNKARAVAAAREAGVPVLGSSAPSTDVD 142

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQLLIEQ 170
              + +   +  P  +K + GG   G+  +++   +   +  +S           + +E+
Sbjct: 143 EL-VRAADDVGFPVFVKAVAGGGGRGMRRVEEPAQLREAIEAASREAASAFGDSTVFLEK 201

Query: 171 Y-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQ 228
             V+   +   ++ D   DV              ++        + PA  +   + + + 
Sbjct: 202 AVVEPRHIEVQILADCEGDVI-----HLFERDCSVQRRHQKVIELAPAPNLDPALRERIC 256

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             A    + IG R     +FL D     VF  E+N 
Sbjct: 257 ADAVNFARQIGYRNAGTVEFLVDRDGNHVFI-EMNP 291


>gi|167629522|ref|YP_001680021.1| carbamoyl-phosphate synthase, large subunit [Heliobacterium
           modesticaldum Ice1]
 gi|167592262|gb|ABZ84010.1| carbamoyl-phosphate synthase, large subunit [Heliobacterium
           modesticaldum Ice1]
          Length = 1084

 Score = 72.5 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 28/200 (14%), Positives = 73/200 (36%), Gaps = 8/200 (4%)

Query: 68  VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ--HLIS 125
           + A L    +P   + +     + D+ + + ++   G+P                   + 
Sbjct: 642 LAAGLHEHGVPILGTSLEGIDAAEDRKKFEALLKRLGIPQSEGRSATSADEAKAIAEELG 701

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            P +++P        + V++  + +   +  +   +    +L+++Y+ G E+    + D 
Sbjct: 702 FPVLVRPSYVIGGRAMEVVENVKDLASYMETAVRISPKHPILVDKYIRGREVEVDAISDG 761

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGIS 244
           +  +     P    +       S +S  V P + +  +    +        +A+G  G+ 
Sbjct: 762 NDTLI----PGIFEHIERAGVHSGDSMAVYPPQSLKREERDTIVDYTMRIAKALGVIGLL 817

Query: 245 RSDFLFDPLSRKVFWLEINV 264
              ++ D    KV+ LE+N 
Sbjct: 818 NIQYVVDGQ-GKVYVLEVNP 836



 Score = 64.0 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 50/288 (17%), Positives = 103/288 (35%), Gaps = 37/288 (12%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVS----------------------QIDVDRSVGL 44
           G ++E + +   G     AL++ G +V                        +DV  S+  
Sbjct: 21  GQAAEFDYA---GTQACKALKEEGIEVVLVNSNPATIMTDANMADHVYIEPLDV-PSLTK 76

Query: 45  VLAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVV 100
           ++A  +PD     L G  G +  V      +L+   +    + +     + D+   K+ +
Sbjct: 77  IIAQERPDGLLPTLGGQTGLNLAVALSQAGVLDQYNVRLLGTSLETIKKAEDRELFKKTM 136

Query: 101 SSCGVPVCPSILVNRFTMD--SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS 158
              G P+  S +V+              P +I+P       G  +   +  +     +  
Sbjct: 137 QEIGEPIPLSEIVSNLDQAVAFARQAGFPLIIRPAYTLGGTGGGIAHTEAELLTICDRGL 196

Query: 159 SWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
             +   Q+L+EQ V G  E+   VM D++ +   I     +     +   + +S  V P+
Sbjct: 197 KKSMIGQVLLEQSVAGWKEIEYEVMRDSNDNCITIC--NMENLD-PVGIHTGDSIVVAPS 253

Query: 218 K-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +    Y+ ++  +    +A+   G     F   P S     +E+N 
Sbjct: 254 QTLTDKEYQMLRSASLKIIRALKVEGGCNVQFALHPESDSYIVIEVNP 301


>gi|152988409|ref|YP_001348637.1| alpha subunit of geranoyl-CoA carboxylase, GnyA [Pseudomonas
           aeruginosa PA7]
 gi|150963567|gb|ABR85592.1| probable acyl-CoA carboxylase alpha chain [Pseudomonas aeruginosa
           PA7]
          Length = 655

 Score = 72.5 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 79/220 (35%), Gaps = 19/220 (8%)

Query: 58  LHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
           +H  +G   E+       E   + +      A      K  +K ++   GVP+ P     
Sbjct: 84  IHPGYGFLSENAGFARACEEAGLLFLGPPAAAIDAMGSKSAAKALMEDAGVPLVPGYHGE 143

Query: 115 RFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGDQL 166
              ++        I  P ++K   GG   G+ V++++  +   L     ++ +     ++
Sbjct: 144 AQDLETFRREAGRIGYPVLLKAAAGGGGKGMKVVEREAELAEALSSAQREAKAAFGDARM 203

Query: 167 LIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIY 224
           L+E+Y +    +   V  D       +            K          PA  +  ++ 
Sbjct: 204 LVEKYLLKPRHVEIQVFADRHGHCLYLNERDCSIQRRHQK-----VVEEAPAPGLGAELR 258

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +   A  A QAIG  G    +FL D    + F++E+N 
Sbjct: 259 RAMGEAAVRAAQAIGYVGAGTVEFLLDER-GQFFFMEMNT 297


>gi|332981995|ref|YP_004463436.1| carbamoyl-phosphate synthase large subunit [Mahella australiensis
           50-1 BON]
 gi|332699673|gb|AEE96614.1| carbamoyl-phosphate synthase large subunit [Mahella australiensis
           50-1 BON]
          Length = 1080

 Score = 72.5 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 36/225 (16%), Positives = 83/225 (36%), Gaps = 19/225 (8%)

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKP 132
           + +P   +  L   ++ D+    ++++   +P      V   +  MD+ + +  P +++P
Sbjct: 652 MGMPIIGTQPLYIDMAEDREEFDKLLNELNIPRPAGATVFTVQEAMDAANKLGYPVLVRP 711

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS---LDV 189
                  G+ +   D+ I   +   +       +L+++Y+ G EL    + D     +  
Sbjct: 712 SYVLGGQGMEIAHSDKDIEEYIGIVNRVKQEHPILVDKYLMGKELEVDAICDGQDILIPG 771

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               V ++  +S        +S  V PA  I       +    +   +A+   G+    F
Sbjct: 772 IMEHVERAGVHS-------GDSISVYPAQNISAKHQDIIVDYTYKLAKALHVIGLVNIQF 824

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    +  V+ +E+N +   T     P ++   G     L    V
Sbjct: 825 IV--YNDDVYIIEVNPRSSRT----VPYISKVTGIPMVNLATRAV 863



 Score = 63.6 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 43/287 (14%), Positives = 104/287 (36%), Gaps = 35/287 (12%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQIDVDRS---------------------VGLV 45
           G ++E + +   G     AL+  G +   ++ + +                     +  +
Sbjct: 21  GQAAEFDYA---GTQACQALKAEGIETVLVNSNPATIMTDTNMADNVYIEPLTVDMIEAI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +    PD     L G  G +  ++     IL+   I    +   +   + D+   ++ + 
Sbjct: 78  IQREHPDSLLPTLGGQTGLNLAMELAEKGILDKYNIKLLGTSAQSIRKAEDREAFRETMK 137

Query: 102 SCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
           + G P+  +++ N     +     +  P +++P       G  + + +  +         
Sbjct: 138 AIGEPIVDNVIANDLDTALAFARKVGYPVIVRPAYTLGGTGGGIARDEYELRRIASDGLR 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   Q+++E  + G  E+   VM D++ +   I V   +     +   + +S  V P++
Sbjct: 198 LSRVHQVIVEPSIAGWKEIEYEVMRDSNGN--CITVCNMENID-PVGIHTGDSIVVAPSQ 254

Query: 219 -IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +    Y+ ++  +     A+   G     F  DP S   F +E+N 
Sbjct: 255 TLSDKEYQMLRSASINIINALEIEGGCNVQFALDPNSMDYFVIEVNP 301


>gi|304407050|ref|ZP_07388704.1| acetyl-CoA carboxylase, biotin carboxylase [Paenibacillus
           curdlanolyticus YK9]
 gi|304344037|gb|EFM09877.1| acetyl-CoA carboxylase, biotin carboxylase [Paenibacillus
           curdlanolyticus YK9]
          Length = 457

 Score = 72.5 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 78/221 (35%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     I E   + +      A +   DK  +KQ +    VPV P    
Sbjct: 78  AIHPGYGFLAENADFAEICESCNVTFIGPSPTAISKMGDKAVAKQTMKDANVPVIPGSDG 137

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS-----SSWNHGD 164
            I      +     I  P +IK   GG   GI +   ++S+   +  +      ++ +  
Sbjct: 138 LIEDMDDAIRIAREIGYPVIIKATAGGGGKGIRIADNEESLISQITTAQQEAQKAFGNAG 197

Query: 165 QLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            + +E+Y+ G   +   +M D   +   +            K             +   I
Sbjct: 198 -VYLEKYLTGMKHVEIQIMADKHGNAVHLFERDCSVQRRRQK----LVEEAPCPVLDPVI 252

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +++ + A  A  A+   G    +FL  P     +++E+N 
Sbjct: 253 REKMGQAAVRAALAVEYSGAGTLEFLLGP-DGNFYFMEMNT 292


>gi|210624199|ref|ZP_03294254.1| hypothetical protein CLOHIR_02210 [Clostridium hiranonis DSM 13275]
 gi|210153186|gb|EEA84192.1| hypothetical protein CLOHIR_02210 [Clostridium hiranonis DSM 13275]
          Length = 1069

 Score = 72.5 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 40/289 (13%), Positives = 95/289 (32%), Gaps = 32/289 (11%)

Query: 22  CASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLV---- 68
           C  +L   G +   I         D D S  L    L  +   N++      DG++    
Sbjct: 580 CVKSLRKQGIETIIINNNPETVSTDFDTSDKLYFEPLTEEEVLNIIE-KENPDGVILQFG 638

Query: 69  -------QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MD 119
                     L    IP   +       + D+ +  +++    +       V      ++
Sbjct: 639 GQTAIKLAKFLHEKHIPILGTDFEDIDAAEDREKFDELLERLDINRPKGRGVWTVEEGLE 698

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
             H +  P +++P       G+ +   +  +   L  +   +  + +LI++Y+ G E+  
Sbjct: 699 VAHNLGFPVLVRPSYVLGGQGMEITYDEARLVQYLEAAFERDSKNPVLIDKYLTGREIEV 758

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
             + D    +    +   +       +S  + T      I   I +++          + 
Sbjct: 759 DAICDKEDILIPGIMEHLERAGV---HSGDSITMYPSQNISDRIKEKILDYTKKIALDLN 815

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
             G+    F+      +++ +E+N +   T     P ++  +G    +L
Sbjct: 816 VIGMVNIQFI--EFQNELYIIEVNPRASRT----VPYISKVSGVPIVDL 858



 Score = 65.9 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 48/289 (16%), Positives = 105/289 (36%), Gaps = 39/289 (13%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQID-------VDRSVGL--------------V 45
           G ++E + S   G     AL++ G +V  I+        D+ +                +
Sbjct: 21  GQAAEFDYS---GTQACQALKEEGIEVVLINSNPATIMTDKEIADKIYIEPLTLEFIEKI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGL-------VQAILELLEIPYTHSGILASALSMDKMRSKQ 98
           +   +PD   ++L G  G+ GL          IL+   +    + + +     D+   ++
Sbjct: 78  IEKERPD---SLLAGMGGQTGLNLAVELYESGILDKYGVKVIGTSVESIKKGEDRDIFRE 134

Query: 99  VVSSCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
           V+     PV  S +V      +   + I  P V++P       G  + + ++ +   L+ 
Sbjct: 135 VMREINQPVIESDIVTTLEDGLAYANKIGYPLVVRPAYTLGGTGGGIAENEEELKEILVH 194

Query: 157 SSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215
               +   Q+L+E+ + G  E+   VM D+  +   I     +       ++  +     
Sbjct: 195 GLQLSPVSQVLLEKSIKGWKEIEYEVMRDSIGNSIVIC--NMENVDPVGVHTGDSIVVAP 252

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              +       +++ +     A+  +G     F  +P S +   +EIN 
Sbjct: 253 TQTLSAKECAMLKKASLDILNAVEVQGGCNVQFALNPDSFEYAVIEINP 301


>gi|254420982|ref|ZP_05034706.1| RimK-like ATP-grasp domain family [Brevundimonas sp. BAL3]
 gi|196187159|gb|EDX82135.1| RimK-like ATP-grasp domain family [Brevundimonas sp. BAL3]
          Length = 659

 Score = 72.5 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 74/220 (33%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  FG   E+      L    I +      A     DK+ SK++ +  GV   P    
Sbjct: 77  AVHPGFGFLSENAGFARRLRDEGIAFIGPNPEAIEAMGDKISSKKLAAEAGVSTVPGHMG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL--DLLQSSSWNH--GDQ 165
            I      +   + I  P +IK   GG   GI V   D  +      +++ + N    D+
Sbjct: 137 LIETPDEAVKIANQIGYPIMIKASAGGGGKGIRVAHSDADMAEGFAAVKAEALNAFGDDR 196

Query: 166 LLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E++ +D   +   V+GD    V  +   +        K             +     
Sbjct: 197 VFLEKFIIDPRHIEIQVLGDKHGHVVHLFERECSIQRRNQK----VIEEAPSPLLDEATR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +   A    +A+        +F      +  ++LE+N 
Sbjct: 253 AAMGAQAVALARAVNYDSAGTVEF-VAGQDKSFYFLEMNT 291


>gi|121611488|ref|YP_999295.1| carbamoyl-phosphate synthase L chain, ATP-binding
           [Verminephrobacter eiseniae EF01-2]
 gi|121556128|gb|ABM60277.1| Carbamoyl-phosphate synthase L chain, ATP-binding
           [Verminephrobacter eiseniae EF01-2]
          Length = 453

 Score = 72.5 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 72/220 (32%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+      +    + +   G  A     DK  ++      GV   P    
Sbjct: 80  AIHPGYGFLSENAAFAEAVTAAGLVFVGPGAAAIRTMGDKAAARLAAQRAGVATVPGSAG 139

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGDQ 165
            +      +     I  P +IK   GG   GI +      +  +L     Q+ +      
Sbjct: 140 AVDGIEEALRIAGDIGYPVLIKASAGGGGRGIHIAGDASELRQELGRAQAQAKAAFGDAA 199

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+++     +   ++GD    V      +        K           A I     
Sbjct: 200 VYLERFIRQARHIEVQILGDGK-RVVHCFERECSLQRRRQKI----WEEAPCAAIDAATR 254

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +   A    +A+   G    ++L+D  +R  F++E+N 
Sbjct: 255 QALCDSALALARAVDYSGAGTLEYLYDEDTRAFFFIEMNT 294


>gi|327311766|ref|YP_004338663.1| carbamoyl phosphate synthase large subunit [Thermoproteus
           uzoniensis 768-20]
 gi|326948245|gb|AEA13351.1| carbamoyl phosphate synthase large subunit [Thermoproteus
           uzoniensis 768-20]
          Length = 1022

 Score = 72.5 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 32/221 (14%), Positives = 86/221 (38%), Gaps = 11/221 (4%)

Query: 70  AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPP 127
            +L    +    + +     ++ +   ++ +   GVP+ PS         + +   +  P
Sbjct: 102 GVLSKYGVRVVGTPVEGIRRALSRELFQKAMREAGVPIPPSRSARSPDEALAAAEELGYP 161

Query: 128 YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDAS 186
            +++        G    +    +   + ++ + +   ++L+E+Y++G  E+   V+ D+ 
Sbjct: 162 VMVRVSFNLGGAGAFKARNRAELESRIYKAFAQSAIGEVLVEKYLEGWKEIEFEVVRDSH 221

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISR 245
            +V  +   ++      + Y + +S  V P + +  D Y+  + ++    +AIG  G   
Sbjct: 222 DNVAAVVCMEN---IDPMGYHTGDSIVVAPCQTLTDDEYQTARDISIAVERAIGLIGEGN 278

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
                +    + + +E    P M+  S     +  +GY   
Sbjct: 279 VQVAVNYAGPEQYAIE--TNPRMSRSS--ALASKASGYPLA 315



 Score = 65.9 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 34/222 (15%), Positives = 86/222 (38%), Gaps = 18/222 (8%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--QHLISPPYV 129
           LE L +    +   +  L+ D+ +  +++   G+   P                +  P +
Sbjct: 637 LEGLGVKIGGTRASSIDLAEDRSKFSRLLDKLGIRQPPWFYARSIEEAEKLAEDLGYPVL 696

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTC-GVMGDASL 187
           ++P        + V +    +   L +++  +    +++ +++  G+E     V     +
Sbjct: 697 LRPSYVLGGTYMAVARNRGELAEFLTKAARVSGEYPVVVSKFMPMGVEAEVDAVSDGRRV 756

Query: 188 DVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRS 246
            VT I   +           S +ST V+P  + P    +++  +A++  + +  RG    
Sbjct: 757 VVTPIEHVEPPGV------HSGDSTMVMPPRRAPEAAVRKMAEIAYMIARELDVRGPLNV 810

Query: 247 DFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
            F+    +  V+ +E N++      S+ P ++   G ++  L
Sbjct: 811 QFIV---ADDVYVIEANLR---ASRSM-PFVSKATGVNYMSL 845


>gi|260187990|ref|ZP_05765464.1| pyruvate carboxylase [Mycobacterium tuberculosis CPHL_A]
 gi|289448638|ref|ZP_06438382.1| pyruvate carboxylase pca [Mycobacterium tuberculosis CPHL_A]
 gi|289421596|gb|EFD18797.1| pyruvate carboxylase pca [Mycobacterium tuberculosis CPHL_A]
          Length = 1127

 Score = 72.5 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 38/247 (15%), Positives = 82/247 (33%), Gaps = 18/247 (7%)

Query: 28  DAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87
           D G  V        +         D  +   +G   E+  + A      I +        
Sbjct: 53  DIGHPVHAYLSVDEIVATARRAGADAIYPG-YGFLSENPDLAAACAAAGISFVGPSAEVL 111

Query: 88  ALSMDKMRSKQVVSSCGVPV----CPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIV 143
            L+ +K R+       G+PV     PS  V+   +     +  P  +K + GG   G+  
Sbjct: 112 ELAGNKSRAIAAAREAGLPVLMSSAPSASVDEL-LSVAAGMPFPLFVKAVAGGGGRGMRR 170

Query: 144 IKKDQSIPLDLLQS-----SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD 198
           +    ++P  +  +     S++      L +  ++   +   ++ D   DV  +      
Sbjct: 171 VGDIAALPEAIEAASREAESAFGDPTVYLEQAVINPRHIEVQILADNLGDVIHLYE---- 226

Query: 199 FYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
                ++        + PA  +  ++  ++   A    + IG       +FL D    + 
Sbjct: 227 -RDCSVQRRHQKVIELAPAPHLDAELRYKMCVDAVAFARHIGYSCAGTVEFLLDER-GEY 284

Query: 258 FWLEINV 264
            ++E+N 
Sbjct: 285 VFIEMNP 291


>gi|254231278|ref|ZP_04924605.1| acetyl-/propionyl-coenzyme A carboxylase alpha chain (alpha
           subunit) accA2 : biotin carboxylase + biotin carboxyl
           carrier protein [Mycobacterium tuberculosis C]
 gi|308231686|ref|ZP_07413442.2| acetyl-/propionyl-CoA carboxylase alpha subunit accA2
           [Mycobacterium tuberculosis SUMu001]
 gi|308370111|ref|ZP_07420317.2| acetyl-/propionyl-CoA carboxylase alpha subunit accA2
           [Mycobacterium tuberculosis SUMu002]
 gi|308370551|ref|ZP_07421978.2| acetyl-/propionyl-CoA carboxylase alpha subunit accA2
           [Mycobacterium tuberculosis SUMu003]
 gi|308371815|ref|ZP_07426341.2| acetyl-/propionyl-CoA carboxylase alpha subunit accA2
           [Mycobacterium tuberculosis SUMu004]
 gi|308372984|ref|ZP_07430658.2| acetyl-/propionyl-CoA carboxylase alpha subunit accA2
           [Mycobacterium tuberculosis SUMu005]
 gi|308374151|ref|ZP_07667723.1| putative carbamoyl-phosphate synthase L chain, ATP binding domain
           protein [Mycobacterium tuberculosis SUMu006]
 gi|308375307|ref|ZP_07443490.2| acetyl-/propionyl-CoA carboxylase alpha subunit accA2
           [Mycobacterium tuberculosis SUMu007]
 gi|308376567|ref|ZP_07439310.2| acetyl-/propionyl-CoA carboxylase alpha subunit accA2
           [Mycobacterium tuberculosis SUMu008]
 gi|308377567|ref|ZP_07479681.2| acetyl-/propionyl-CoA carboxylase alpha subunit accA2
           [Mycobacterium tuberculosis SUMu009]
 gi|308378778|ref|ZP_07483872.2| acetyl-/propionyl-CoA carboxylase alpha subunit accA2
           [Mycobacterium tuberculosis SUMu010]
 gi|308379921|ref|ZP_07669073.1| acetyl-/propionyl-CoA carboxylase alpha subunit accA2
           [Mycobacterium tuberculosis SUMu011]
 gi|124600337|gb|EAY59347.1| acetyl-/propionyl-coenzyme A carboxylase alpha chain (alpha
           subunit) accA2 : biotin carboxylase + biotin carboxyl
           carrier protein [Mycobacterium tuberculosis C]
 gi|308216451|gb|EFO75850.1| acetyl-/propionyl-CoA carboxylase alpha subunit accA2
           [Mycobacterium tuberculosis SUMu001]
 gi|308325301|gb|EFP14152.1| acetyl-/propionyl-CoA carboxylase alpha subunit accA2
           [Mycobacterium tuberculosis SUMu002]
 gi|308331569|gb|EFP20420.1| acetyl-/propionyl-CoA carboxylase alpha subunit accA2
           [Mycobacterium tuberculosis SUMu003]
 gi|308335364|gb|EFP24215.1| acetyl-/propionyl-CoA carboxylase alpha subunit accA2
           [Mycobacterium tuberculosis SUMu004]
 gi|308339166|gb|EFP28017.1| acetyl-/propionyl-CoA carboxylase alpha subunit accA2
           [Mycobacterium tuberculosis SUMu005]
 gi|308342833|gb|EFP31684.1| putative carbamoyl-phosphate synthase L chain, ATP binding domain
           protein [Mycobacterium tuberculosis SUMu006]
 gi|308346728|gb|EFP35579.1| acetyl-/propionyl-CoA carboxylase alpha subunit accA2
           [Mycobacterium tuberculosis SUMu007]
 gi|308350641|gb|EFP39492.1| acetyl-/propionyl-CoA carboxylase alpha subunit accA2
           [Mycobacterium tuberculosis SUMu008]
 gi|308355301|gb|EFP44152.1| acetyl-/propionyl-CoA carboxylase alpha subunit accA2
           [Mycobacterium tuberculosis SUMu009]
 gi|308359346|gb|EFP48197.1| acetyl-/propionyl-CoA carboxylase alpha subunit accA2
           [Mycobacterium tuberculosis SUMu010]
 gi|308363253|gb|EFP52104.1| acetyl-/propionyl-CoA carboxylase alpha subunit accA2
           [Mycobacterium tuberculosis SUMu011]
          Length = 669

 Score = 72.5 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 41/217 (18%), Positives = 82/217 (37%), Gaps = 21/217 (9%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
           +G   E+    A ++   + +    + A      K+ SK+++++ GVPV     +     
Sbjct: 82  YGFLSENAEFAAAVQEAGLTWVGPPVDAVRAMGSKIESKKLMAAAGVPV-----LEELDP 136

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQLLIEQYV-D 173
           D+      P ++K   GG   G+ V+ +  ++P ++  +            +  E+Y+  
Sbjct: 137 DAVTTAQLPVLVKASAGGGGRGMRVVHELSALPAEVEAARREAQSAFGDPTVFCERYLPT 196

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI---YKEVQRL 230
           G  +   VM D    V  +   +        K          P+ +   +     ++   
Sbjct: 197 GHHVEVQVMADTHGTVWAVGERECSIQRRHQK-----IIEEAPSPLVERVPGMRAKLFDA 251

Query: 231 AFLAHQAIGCRGISRSDFLFDPL---SRKVFWLEINV 264
           A LA  AIG  G    +FL D       + ++LE+N 
Sbjct: 252 ARLAASAIGYTGAGTVEFLADDSPGREGEFYFLEMNT 288


>gi|294498135|ref|YP_003561835.1| pyruvate carboxylase [Bacillus megaterium QM B1551]
 gi|294348072|gb|ADE68401.1| pyruvate carboxylase [Bacillus megaterium QM B1551]
          Length = 1149

 Score = 72.5 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 32/221 (14%), Positives = 74/221 (33%), Gaps = 20/221 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       E   I +         +  DK++++       +PV P    
Sbjct: 84  AIHPGYGFLSENIQFAKRCEEEGIIFIGPKSKHLDMFGDKVKARHQAIQADIPVIPGTDG 143

Query: 114 NRFTMDSQHLI----SPPYVIKPLKGGSSLGIIVIKKDQSIPL----DLLQSSSWNHGDQ 165
              ++D           P +IK   GG   G+ +++   S+         ++ +    D+
Sbjct: 144 PIDSIDEAKEFANQHGYPLMIKAALGGGGRGMRIVRDADSLNESYDRAKSEAKAAFGNDE 203

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDI 223
           + +E+ V+    +   ++GD   +V  +           ++        V P   I   +
Sbjct: 204 VYVEKLVENPKHIEVQILGDEQGNVVHLYE-----RDCSVQRRHQKVVEVAPSVSIDEGL 258

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              +   A    + +        +FL        +++E+N 
Sbjct: 259 RLRICEAAVQLMEKVQYINAGTVEFLV--SGNDFYFIEVNP 297


>gi|215429831|ref|ZP_03427750.1| acetyl-/propionyl-coenzyme A carboxylase subunit alpha
           [Mycobacterium tuberculosis EAS054]
 gi|289753029|ref|ZP_06512407.1| biotin carboxylase + biotin carboxyl carrier protein [Mycobacterium
           tuberculosis EAS054]
 gi|289693616|gb|EFD61045.1| biotin carboxylase + biotin carboxyl carrier protein [Mycobacterium
           tuberculosis EAS054]
          Length = 667

 Score = 72.5 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 41/217 (18%), Positives = 82/217 (37%), Gaps = 21/217 (9%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
           +G   E+    A ++   + +    + A      K+ SK+++++ GVPV     +     
Sbjct: 80  YGFLSENAEFAAAVQEAGLTWVGPPVDAVRAMGSKIESKKLMAAAGVPV-----LEELDP 134

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQLLIEQYV-D 173
           D+      P ++K   GG   G+ V+ +  ++P ++  +            +  E+Y+  
Sbjct: 135 DAVTTAQLPVLVKASAGGGGRGMRVVHELSALPAEVEAARREAQSAFGDPTVFCERYLPT 194

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI---YKEVQRL 230
           G  +   VM D    V  +   +        K          P+ +   +     ++   
Sbjct: 195 GHHVEVQVMADTHGTVWAVGERECSIQRRHQK-----IIEEAPSPLVERVPGMRAKLFDA 249

Query: 231 AFLAHQAIGCRGISRSDFLFDPL---SRKVFWLEINV 264
           A LA  AIG  G    +FL D       + ++LE+N 
Sbjct: 250 ARLAASAIGYTGAGTVEFLADDSPGREGEFYFLEMNT 286


>gi|198432075|ref|XP_002131306.1| PREDICTED: similar to propionyl-Coenzyme A carboxylase, alpha
           polypeptide isoform 1 [Ciona intestinalis]
          Length = 708

 Score = 72.5 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 76/220 (34%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      L    + +      A     DK++SK +    GV   P    
Sbjct: 117 AVHPGYGFLSENKEFAKTLAANNVAFIGPDTFAIDAMGDKIKSKLIAKEAGVNTIPGYDG 176

Query: 112 LVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
           +V      +     I  P +IK   GG   G+ +   ++           ++++    D+
Sbjct: 177 VVENVEDAVKIAEEIGYPVMIKASAGGGGKGMRIAWNEKETREGFRFSSQEAAASFGDDR 236

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           LLIE+++D    +   V+ D   +   +   +        K             +     
Sbjct: 237 LLIEKFIDTPRHIEMQVLADGYGNTLWLNERECSIQRRNQK----VVEEAPSIYLDPTTR 292

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + + + A    +A+  +     +FL D      ++LE+N 
Sbjct: 293 EAMGKQAVALAEAVQYKSAGTVEFLVDSKKN-FYFLEMNT 331


>gi|15608113|ref|NP_215488.1| acetyl-/propionyl-coenzyme A carboxylase subunit alpha
           [Mycobacterium tuberculosis H37Rv]
 gi|15840399|ref|NP_335436.1| acetyl/propionyl-CoA carboxylase, alpha subunit [Mycobacterium
           tuberculosis CDC1551]
 gi|148660753|ref|YP_001282276.1| acetyl-/propionyl-coenzyme A carboxylase subunit alpha
           [Mycobacterium tuberculosis H37Ra]
 gi|148822182|ref|YP_001286936.1| acetyl-/propionyl-coenzyme A carboxylase subunit alpha
           [Mycobacterium tuberculosis F11]
 gi|167967748|ref|ZP_02550025.1| acetyl-/propionyl-coenzyme A carboxylase alpha subunit accA2 :
           biotin carboxylase + biotin carboxyl carrier protein
           [Mycobacterium tuberculosis H37Ra]
 gi|215410565|ref|ZP_03419373.1| acetyl-/propionyl-coenzyme A carboxylase subunit alpha
           [Mycobacterium tuberculosis 94_M4241A]
 gi|215445121|ref|ZP_03431873.1| acetyl-/propionyl-coenzyme A carboxylase subunit alpha
           [Mycobacterium tuberculosis T85]
 gi|218752641|ref|ZP_03531437.1| acetyl-/propionyl-coenzyme A carboxylase subunit alpha
           [Mycobacterium tuberculosis GM 1503]
 gi|253799999|ref|YP_003033000.1| acetyl-/propionyl-CoA carboxylase alpha subunit accA2
           [Mycobacterium tuberculosis KZN 1435]
 gi|254363897|ref|ZP_04979943.1| acetyl-/propionyl-coenzyme A carboxylase alpha chain (alpha
           subunit) accA2 : biotin carboxylase + biotin carboxyl
           carrier protein [Mycobacterium tuberculosis str.
           Haarlem]
 gi|254549955|ref|ZP_05140402.1| acetyl-/propionyl-CoA carboxylase alpha subunit accA2
           [Mycobacterium tuberculosis '98-R604 INH-RIF-EM']
 gi|260185878|ref|ZP_05763352.1| acetyl-/propionyl-CoA carboxylase alpha subunit accA2
           [Mycobacterium tuberculosis CPHL_A]
 gi|260204181|ref|ZP_05771672.1| acetyl-/propionyl-CoA carboxylase alpha subunit accA2
           [Mycobacterium tuberculosis K85]
 gi|289446548|ref|ZP_06436292.1| acetyl-/propionyl-CoA carboxylase alpha subunit accA2
           [Mycobacterium tuberculosis CPHL_A]
 gi|289555245|ref|ZP_06444455.1| acetyl-/propionyl-CoA carboxylase alpha subunit accA2
           [Mycobacterium tuberculosis KZN 605]
 gi|289573604|ref|ZP_06453831.1| acetyl-/propionyl-CoA carboxylase alpha subunit accA2
           [Mycobacterium tuberculosis K85]
 gi|289757058|ref|ZP_06516436.1| biotin carboxylase + biotin carboxyl carrier protein [Mycobacterium
           tuberculosis T85]
 gi|289761108|ref|ZP_06520486.1| biotin carboxylase [Mycobacterium tuberculosis GM 1503]
 gi|294996463|ref|ZP_06802154.1| acetyl-/propionyl-CoA carboxylase alpha subunit accA2
           [Mycobacterium tuberculosis 210]
 gi|297633497|ref|ZP_06951277.1| acetyl-/propionyl-CoA carboxylase alpha subunit accA2
           [Mycobacterium tuberculosis KZN 4207]
 gi|297730482|ref|ZP_06959600.1| acetyl-/propionyl-CoA carboxylase alpha subunit accA2
           [Mycobacterium tuberculosis KZN R506]
 gi|298524466|ref|ZP_07011875.1| biotin carboxylase [Mycobacterium tuberculosis 94_M4241A]
 gi|313657810|ref|ZP_07814690.1| acetyl-/propionyl-CoA carboxylase alpha subunit accA2
           [Mycobacterium tuberculosis KZN V2475]
 gi|3261631|emb|CAB02010.1| PROBABLE ACETYL-/PROPIONYL-COENZYME A CARBOXYLASE ALPHA CHAIN
           (ALPHA SUBUNIT) ACCA2: BIOTIN CARBOXYLASE + BIOTIN
           CARBOXYL CARRIER PROTEIN (BCCP) [Mycobacterium
           tuberculosis H37Rv]
 gi|13880567|gb|AAK45250.1| acetyl/propionyl-CoA carboxylase, alpha subunit [Mycobacterium
           tuberculosis CDC1551]
 gi|134149411|gb|EBA41456.1| acetyl-/propionyl-coenzyme A carboxylase alpha chain (alpha
           subunit) accA2 : biotin carboxylase + biotin carboxyl
           carrier protein [Mycobacterium tuberculosis str.
           Haarlem]
 gi|148504905|gb|ABQ72714.1| acetyl-/propionyl-coenzyme A carboxylase alpha chain AccA2 : biotin
           carboxylase + biotin carboxyl carrier protein
           [Mycobacterium tuberculosis H37Ra]
 gi|148720709|gb|ABR05334.1| acetyl-/propionyl-coenzyme A carboxylase alpha subunit accA2 :
           biotin carboxylase + biotin carboxyl carrier protein
           [Mycobacterium tuberculosis F11]
 gi|253321502|gb|ACT26105.1| acetyl-/propionyl-CoA carboxylase alpha subunit accA2
           [Mycobacterium tuberculosis KZN 1435]
 gi|289419506|gb|EFD16707.1| acetyl-/propionyl-CoA carboxylase alpha subunit accA2
           [Mycobacterium tuberculosis CPHL_A]
 gi|289439877|gb|EFD22370.1| acetyl-/propionyl-CoA carboxylase alpha subunit accA2
           [Mycobacterium tuberculosis KZN 605]
 gi|289538035|gb|EFD42613.1| acetyl-/propionyl-CoA carboxylase alpha subunit accA2
           [Mycobacterium tuberculosis K85]
 gi|289708614|gb|EFD72630.1| biotin carboxylase [Mycobacterium tuberculosis GM 1503]
 gi|289712622|gb|EFD76634.1| biotin carboxylase + biotin carboxyl carrier protein [Mycobacterium
           tuberculosis T85]
 gi|298494260|gb|EFI29554.1| biotin carboxylase [Mycobacterium tuberculosis 94_M4241A]
 gi|326904801|gb|EGE51734.1| acetyl-/propionyl-CoA carboxylase alpha subunit accA2
           [Mycobacterium tuberculosis W-148]
 gi|328459741|gb|AEB05164.1| acetyl-/propionyl-CoA carboxylase alpha subunit accA2
           [Mycobacterium tuberculosis KZN 4207]
          Length = 667

 Score = 72.5 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 41/217 (18%), Positives = 82/217 (37%), Gaps = 21/217 (9%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
           +G   E+    A ++   + +    + A      K+ SK+++++ GVPV     +     
Sbjct: 80  YGFLSENAEFAAAVQEAGLTWVGPPVDAVRAMGSKIESKKLMAAAGVPV-----LEELDP 134

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQLLIEQYV-D 173
           D+      P ++K   GG   G+ V+ +  ++P ++  +            +  E+Y+  
Sbjct: 135 DAVTTAQLPVLVKASAGGGGRGMRVVHELSALPAEVEAARREAQSAFGDPTVFCERYLPT 194

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI---YKEVQRL 230
           G  +   VM D    V  +   +        K          P+ +   +     ++   
Sbjct: 195 GHHVEVQVMADTHGTVWAVGERECSIQRRHQK-----IIEEAPSPLVERVPGMRAKLFDA 249

Query: 231 AFLAHQAIGCRGISRSDFLFDPL---SRKVFWLEINV 264
           A LA  AIG  G    +FL D       + ++LE+N 
Sbjct: 250 ARLAASAIGYTGAGTVEFLADDSPGREGEFYFLEMNT 286


>gi|291532573|emb|CBL05686.1| biotin carboxylase /acetyl-CoA carboxylase carboxyltransferase
           subunit alpha [Megamonas hypermegale ART12/1]
          Length = 474

 Score = 72.5 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 33/215 (15%), Positives = 74/215 (34%), Gaps = 13/215 (6%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   ED     ++    + +            DK  ++  +   G+P+      
Sbjct: 77  AVHPGYGFLSEDADFAEMVTKAGMTWIGPWADTIRKVGDKDEARAAMIPSGIPMSKGSTP 136

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      ++    +  P ++KP+ GG   G+++   +  +   L       +  +   E 
Sbjct: 137 LTSVEDAVEQAKDVGYPIILKPVAGGGGKGMLIANSEDDLRNILTIIDI--NKVKYYFEH 194

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           Y++    +   ++ D    V  +   +        K             +  D   EV  
Sbjct: 195 YIEHSRHIEVQIVADNYGHVIHLGERECSLQRRNQKLL----EESPSIALTPDRRAEVGA 250

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           LA  A +++    I   +FL D  + +  ++EIN 
Sbjct: 251 LAIKAAKSVHYNNIGTVEFLLDLKTNQFNFMEINP 285


>gi|189463607|ref|ZP_03012392.1| hypothetical protein BACCOP_04331 [Bacteroides coprocola DSM 17136]
 gi|189429710|gb|EDU98694.1| hypothetical protein BACCOP_04331 [Bacteroides coprocola DSM 17136]
          Length = 389

 Score = 72.5 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 50/253 (19%), Positives = 86/253 (33%), Gaps = 37/253 (14%)

Query: 33  VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
            S +D D ++  V+    PD+    +     E         L  +      ++ SA +++
Sbjct: 49  FSMLDGD-ALDRVVEKYHPDIIVPEIEAIRTE--------RLYHLEKEGIQVVPSARAVN 99

Query: 93  -----KMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVIK 145
                K          G+          F    ++   I  P VIKPL   S  G  V K
Sbjct: 100 FTMNRKAIRDLAAKELGLKTAKYYYAKSFDELKEAAEKIGYPCVIKPLMSSSGKGQSVAK 159

Query: 146 KDQSIPLDLLQSSSWNHGD--QLLIEQYVDGIE----LTCGVMGDASLDVTEIA-VPKSD 198
             + +          + GD  +L++E++V        LT       +L    I  V K  
Sbjct: 160 GPEDLEYSWAYGCEGSRGDIKELIVEEFVKFDSEITLLTVTQKNGPTLFCPPIGHVQKGG 219

Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
            Y               PA I  +   E Q++A    +A+   G+   +F        V+
Sbjct: 220 DY----------RESFQPAHIAPEHLAEAQKMAAKVTEALTGYGLWGVEFFLS-HDNGVY 268

Query: 259 WLEINVQP---GM 268
           + E++ +P   GM
Sbjct: 269 FSELSPRPHDTGM 281


>gi|126649768|ref|ZP_01722004.1| pyruvate carboxylase [Bacillus sp. B14905]
 gi|126593487|gb|EAZ87432.1| pyruvate carboxylase [Bacillus sp. B14905]
          Length = 1144

 Score = 72.5 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 34/243 (13%), Positives = 86/243 (35%), Gaps = 21/243 (8%)

Query: 35  QIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSM 91
            ID    +  ++A  K D   + +H  +G   E+       E   I +         +  
Sbjct: 59  PIDAYLDIEGIIAIAK-DADVDAIHPGYGFLSENVEFARRCEEEGIIFIGPTSQHLDMFG 117

Query: 92  DKMRSKQVVSSCGVPVCPSI---LVNRFTMDS-QHLISPPYVIKPLKGGSSLGIIVIKKD 147
           DK++++    +  +PV P     + N   +++    +  P +IK   GG   G+ ++   
Sbjct: 118 DKVKARSQAIAADIPVIPGTDGPVANLAEVEAFASTVGYPVMIKAALGGGGRGMRLVHAA 177

Query: 148 QSIPLDLL----QSSSWNHGDQLLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSY 202
           + +         ++ +    D++ +E+  +    +   ++GD   ++  +          
Sbjct: 178 EELASAYERAKSEAKAAFGSDEVYVEKAIIKPKHIEVQIIGDQQGNIVHLYERDCSIQRR 237

Query: 203 ELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
             K        + P+  I  ++   +   A    + +        +FL        +++E
Sbjct: 238 HQK-----VVEIAPSHSISEELRNRICTAAVKIMKNVSYINAGTVEFLV--AGNDFYFIE 290

Query: 262 INV 264
           +N 
Sbjct: 291 VNP 293


>gi|323720684|gb|EGB29762.1| acetyl-/propionyl-CoA carboxylase alpha subunit accA2
           [Mycobacterium tuberculosis CDC1551A]
          Length = 670

 Score = 72.5 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 41/217 (18%), Positives = 82/217 (37%), Gaps = 21/217 (9%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
           +G   E+    A ++   + +    + A      K+ SK+++++ GVPV     +     
Sbjct: 83  YGFLSENAEFAAAVQEAGLTWVGPPVDAVRAMGSKIESKKLMAAAGVPV-----LEELDP 137

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQLLIEQYV-D 173
           D+      P ++K   GG   G+ V+ +  ++P ++  +            +  E+Y+  
Sbjct: 138 DAVTTAQLPVLVKASAGGGGRGMRVVHELSALPAEVEAARREAQSAFGDPTVFCERYLPT 197

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI---YKEVQRL 230
           G  +   VM D    V  +   +        K          P+ +   +     ++   
Sbjct: 198 GHHVEVQVMADTHGTVWAVGERECSIQRRHQK-----IIEEAPSPLVERVPGMRAKLFDA 252

Query: 231 AFLAHQAIGCRGISRSDFLFDPL---SRKVFWLEINV 264
           A LA  AIG  G    +FL D       + ++LE+N 
Sbjct: 253 ARLAASAIGYTGAGTVEFLADDSPGREGEFYFLEMNT 289


>gi|307721669|ref|YP_003892809.1| RimK domain-containing protein ATP-grasp [Sulfurimonas autotrophica
           DSM 16294]
 gi|306979762|gb|ADN09797.1| RimK domain protein ATP-grasp [Sulfurimonas autotrophica DSM 16294]
          Length = 304

 Score = 72.5 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 41/218 (18%), Positives = 81/218 (37%), Gaps = 27/218 (12%)

Query: 88  ALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPY---VIKPLKGGSSLGIIVI 144
           AL+ DK  +  V+ + G+      L +R        I   +   V KP  G   +G+  I
Sbjct: 101 ALTEDKFHTSFVLRNNGIKTADYKLCHRDDGHELKKIIKKWDKMVYKPTDGWGGVGLTKI 160

Query: 145 KKDQSIPLDLLQSSSWNHGDQL-LIEQYV--DGIELTCGVMGDASLDVTEIAVPKSDFYS 201
           + + ++  D+L         +   +E+++  D  +    ++             K+    
Sbjct: 161 ESEANL--DMLMPFLNQMDLRYFYVEKFINYDNTDFRVDIVDGK---FVACYGRKASGTD 215

Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
           +    +S  S  +  A        EV  +A  A +A G   I   D ++D  + +   LE
Sbjct: 216 WRTNVTSGGSVFIREAN------DEVVNIAKKACKATGV-DIGGVDIIYDRDTEEYIVLE 268

Query: 262 INVQPGMTPVSIFPEMAAYAGYSFR----ELLLWMVED 295
           +N  P        PE     G +F     +L++ +++ 
Sbjct: 269 VNGIPAFAT----PEQ-EKMGLNFNNKKIDLIVDLIDR 301


>gi|209168853|gb|ABF74732.1| acetyl-CoA carboxylase [Elaeis guineensis]
          Length = 536

 Score = 72.5 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 80/221 (36%), Gaps = 18/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
           +LH  +G   E+     I +   I +      +  +  DK  +++ +   GVP  P    
Sbjct: 144 MLHPGYGFLAENAGFVDICKEHGINFIGPNPDSIRVMGDKSTARETMKKAGVPTVPGSDG 203

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS----IPLDLLQSSSWNHGDQ 165
            +      +   H +  P +IK   GG   G+ +  + +     +     ++++    D 
Sbjct: 204 LLQSTEEAVKLAHEVGFPVMIKATAGGGGRGMRLAYEPEQFVKLLQQAKSEAAAAFGNDG 263

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+Y+ +   +   V+ D   +V               K             +  ++ 
Sbjct: 264 VYLEKYIQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLL----EEAPSPALTPELR 319

Query: 225 KEVQRLAFLAHQAIG-CRGISRSDFLFDPLSRKVFWLEINV 264
           K +   A  A  +IG   G +  +FL D      +++E+N 
Sbjct: 320 KAMGDAAVAAAASIGYIGGWNCGNFLLDER-GSFYFMEMNT 359


>gi|259418646|ref|ZP_05742563.1| carbamoyl-phosphate synthase, large subunit [Silicibacter sp.
           TrichCH4B]
 gi|259344868|gb|EEW56722.1| carbamoyl-phosphate synthase, large subunit [Silicibacter sp.
           TrichCH4B]
          Length = 1120

 Score = 72.5 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 46/267 (17%), Positives = 101/267 (37%), Gaps = 33/267 (12%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAI---- 71
           AL DAG++   +         D D S  L    L  +    +L     E+G +  +    
Sbjct: 613 ALTDAGYETIMVNCNPETVSTDYDTSDRLYFEPLTMEHVMEILRVEQ-ENGTLHGVIVQF 671

Query: 72  -----------LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTM 118
                      LE   IP   +   A  L+ D+ R + +V+  G+    + +   +   +
Sbjct: 672 GGQTPLKLANALEAEGIPILGTTPDAIDLAEDRERFQALVNELGLKQPKNGIASTDEQAL 731

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                I  P VI+P        + +++    +   + ++   +    +L++ Y+ G    
Sbjct: 732 KIAEEIGFPLVIRPSYVLGGRAMEIVRDMDQLKRYIKEAVVVSGDSPVLLDSYLSG---A 788

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELK-YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
             +  DA  D T++ V     +  E   +S  ++  + P  +  D+ + ++  +F   +A
Sbjct: 789 VELDVDAICDGTDVHVAGIMQHIEEAGVHSGDSACSLPPYSLDKDVIERIKEQSFALAKA 848

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINV 264
           +   G+    F       +++ +E+N 
Sbjct: 849 LNVVGLMNVQFAI--KDNEIYLIEVNP 873



 Score = 53.2 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 43/291 (14%), Positives = 97/291 (33%), Gaps = 48/291 (16%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D                V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPGLADATYIEPITPEVVAKIIEKERPDALLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G  G +  +      +LE   +    +   A  ++ D+   ++ +   G+    + +
Sbjct: 89  TMGGQTGLNTSLALEEMGVLEKYNVEMIGAKREAIEMAEDRKLFREAMDRLGLENPRATI 148

Query: 113 VN---------------RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
           V                +  +++   I  P +I+P       G  V    +         
Sbjct: 149 VTAPKKDNGSADLEAGVQIALEALEDIGLPAIIRPAFTLGGTGGGVAYNREDYIHYCRSG 208

Query: 158 SSWNHGDQLLIEQYVDG-IELTCGVMGDASL-DVTEIAVPKSDFYSYELKYSSLNSTHVL 215
              +  +Q+L+++ + G  E    V+ D +   +   ++   D           +S  V 
Sbjct: 209 MDASPVNQILVDESLLGWKEYEMEVVRDKADNAIIVCSIENVDPMGVHT----GDSITVA 264

Query: 216 PA-KIPLDIYKEVQRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           PA  +    Y+ ++  +    + IG   G S   +  +P   ++  +E+N 
Sbjct: 265 PALTLTDKEYQIMRTASIAVLREIGVETGGSNVQWAVNPDDGRMVVIEMNP 315


>gi|241895144|ref|ZP_04782440.1| carbamoyl-phosphate synthase large subunit [Weissella
           paramesenteroides ATCC 33313]
 gi|241871640|gb|EER75391.1| carbamoyl-phosphate synthase large subunit [Weissella
           paramesenteroides ATCC 33313]
          Length = 1058

 Score = 72.5 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 51/287 (17%), Positives = 104/287 (36%), Gaps = 35/287 (12%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQIDVD---------------------RSVGLV 45
           G ++E + S   G   A +L++ G++V  ++ +                       +  +
Sbjct: 21  GQAAEFDYS---GTQAAMSLKEEGYEVVLVNSNPATIMTDSEIADEVYIEPLSVEFLSRI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           L   +PD     L G  G +   Q     IL+ L I    + + A   + D+   K +++
Sbjct: 78  LRKERPDAILPTLGGQTGLNMAKQLAETGILDELGIILLGTKLSAIEEAEDREAFKNLMT 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
               PV  S++       +        P +++P       G  +   +  +         
Sbjct: 138 RLNEPVPESMIAVTVAQALSFAETNGYPVIVRPAYTLGGTGGGIANNEAELQTIAANGLE 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   Q+LIEQ + G  E+   VM DA+ +   + V   + +   +   + +S  V P +
Sbjct: 198 LSPVTQVLIEQSIAGYKEIEFEVMRDAADNA--LIVASMENFD-PVGIHTGDSIVVAPVQ 254

Query: 219 -IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +     + ++  A    +A+   G        DP S     +E+N 
Sbjct: 255 TLSDRELQMMRDAALKIIRALKIEGGVNIQMALDPNSFNYDIIEVNP 301



 Score = 60.5 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 23/193 (11%), Positives = 69/193 (35%), Gaps = 9/193 (4%)

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGV--PVCPSILVNRFTMDSQHLISPPYVIKP 132
             +    + +     + D+    QV+    +  P+  +       + +   +  P +++P
Sbjct: 649 AGVNILGTSVANLNRAEDREEFDQVIKQLALAQPMGKTATTIAEALHAAETVGYPVLVRP 708

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192
                   + ++  +  +   + ++   +H   +LI+ Y+ G E    V+ D    V   
Sbjct: 709 SYVLGGRAMEIVNNEVELQDYMGRAVQVSHDHPVLIDSYLVGSEAEVDVLSDGETVVIPG 768

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
            +   +           +S  V P + +   + +E+   +    +++   G+    F+  
Sbjct: 769 IMEHIERAGVHS----GDSMSVYPTQTLSDKVKQEIITASIALAKSLDTIGLMNVQFVIH 824

Query: 252 PLSRKVFWLEINV 264
             +   + +E+N 
Sbjct: 825 EDTA--YVIEVNP 835


>gi|327191842|gb|EGE58839.1| putative carbamoyl-phosphate-synthetase protein [Rhizobium etli
           CNPAF512]
          Length = 397

 Score = 72.5 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 28/204 (13%), Positives = 77/204 (37%), Gaps = 14/204 (6%)

Query: 93  KMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152
           K   +       +P   S+ ++  +      +  P ++KP    S  G+  +     +  
Sbjct: 109 KQAFRNFTEQNDIPAPRSVRLHDDSPVETGALRYPLLVKPSDSFSGRGVTKVFDRTELAD 168

Query: 153 DLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
            +  +   +   +++IE++++G +      + +  +          D Y     Y   +S
Sbjct: 169 AIADARRNSRAAEIVIEEFIEGSLHSHSAFIKNQEIVFDVFV----DEYCTVYPYQVDSS 224

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLE-INVQPGMT 269
            H  P+++   +  + + +     + +G + G+  + FL       V+ +E +   PG  
Sbjct: 225 NH--PSRLSETVRSKTRTIMARVIKLLGLQDGLIHTQFL--SNDDDVWIVECMRRCPGDL 280

Query: 270 PVSIFPEMAAYAGYSFRELLLWMV 293
             S+        G  + +L++ ++
Sbjct: 281 YGSLVDLSL---GIDYADLVITLL 301


>gi|315162367|gb|EFU06384.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecalis
           TX0645]
          Length = 1066

 Score = 72.5 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 49/296 (16%), Positives = 108/296 (36%), Gaps = 34/296 (11%)

Query: 25  ALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNVLHGNFG 63
           AL++ G++V  ++        D+ +                +L   +PD     L G  G
Sbjct: 42  ALKEEGYEVVLVNSNPATIMTDKEIADHVYIEPITLEFVSRILRKERPDALLPTLGGQTG 101

Query: 64  EDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFT 117
            +  ++     IL+ L +    + + A   + D+   KQ++     P+  S +VN     
Sbjct: 102 LNMAMELSESGILDELNVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIVNTVEQA 161

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IE 176
           +     I  P +++P       G  +   ++ +          +   Q LIE+ + G  E
Sbjct: 162 VAFAKRIGYPIIVRPAFTLGGTGGGMCDTEEELRQIAENGLKLSPVTQCLIEKSIAGFKE 221

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +   VM D++ +   I V   + +     ++  +        +    Y+ ++  +    +
Sbjct: 222 IEYEVMRDSADNA--IVVCNMENFDPVGIHTGDSIVFAPSQTLSDYEYQMLRDASLKIIR 279

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           ++   G        DP S   + +E+N  P ++  S     +   GY   +L   +
Sbjct: 280 SLKIEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAKI 331



 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/221 (11%), Positives = 71/221 (32%), Gaps = 13/221 (5%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--QHLISPPYVIKPL 133
            +    + I     + ++   +Q +    +P  P                I  P +++P 
Sbjct: 656 GVKILGTTIEDLDRAENRDLFEQALQELAIPQPPGDTATSAEEAVVIADRIGYPVLVRPS 715

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
                  + +++  + +   +  +   +    +L++ Y+ G E     + D    +    
Sbjct: 716 YVLGGRAMEIVENQKDLEDYMRHAVKASPEHPVLVDSYLLGQECEVDAICDGETVLIPGI 775

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
           +   +           +S  V P + +  +I   +          + C G+    F+   
Sbjct: 776 MEHIERAGVHS----GDSMAVYPPQYLSQEIQATIADYTKKLALGLNCVGMMNIQFVIHE 831

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
              +V+ +E+N +   T     P ++   G    ++    +
Sbjct: 832 --NRVYVIEVNPRASRT----VPFLSKITGIPMAQVATKAI 866


>gi|302524240|ref|ZP_07276582.1| acetyl-CoA carboxylase, biotin carboxylase [Streptomyces sp. AA4]
 gi|302433135|gb|EFL04951.1| acetyl-CoA carboxylase, biotin carboxylase [Streptomyces sp. AA4]
          Length = 598

 Score = 72.5 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 32/205 (15%), Positives = 65/205 (31%), Gaps = 15/205 (7%)

Query: 69  QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLI 124
           QA+L+   + +      +     DK+ ++ +    G P+ P         D         
Sbjct: 105 QAVLD-AGLTWIGPSPQSIRDLGDKVTARHIAMRAGAPLVPGTKEPVKDADEIIAFADEH 163

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPL----DLLQSSSWNHGDQLLIEQYVD-GIELTC 179
             P  IK   GG   G+ V +  + IP        ++ +     +  +E+Y+D    +  
Sbjct: 164 GLPVAIKAAFGGGGRGLKVARTREEIPELFESATREAVAAFGRGECFVERYLDKPRHVEA 223

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
            V+ D   +   +            K             +  D    +   A    +  G
Sbjct: 224 QVLADQHGNAIVVGTRDCSLQRRHQK----LVEEAPAPYLSDDQRARIHESAKAICKEAG 279

Query: 240 CRGISRSDFLFDPLSRKVFWLEINV 264
             G    ++L   +   + +LE+N 
Sbjct: 280 YYGAGTVEYLV-AVDGTISFLEVNT 303


>gi|294790943|ref|ZP_06756101.1| carbamoyl-phosphate synthase, large subunit [Scardovia inopinata
           F0304]
 gi|294458840|gb|EFG27193.1| carbamoyl-phosphate synthase, large subunit [Scardovia inopinata
           F0304]
          Length = 1071

 Score = 72.5 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 52/287 (18%), Positives = 106/287 (36%), Gaps = 35/287 (12%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQID------------VDRSVGLVLA------- 47
           G ++E + S   G     +L + G++V  I+             DR     L        
Sbjct: 21  GQAAEFDYS---GSQACQSLREEGYEVVLINSNPATIMTDASIADRVYIEPLTVDFAKRV 77

Query: 48  --HLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
               +PD     L G  G + +V+     IL+ + +    + + A   + D+   + +++
Sbjct: 78  IYKERPDAILGTLGGQTGLNLVVELHQNGILDSMGVEILGTDLEAINKAEDRELFRSLMN 137

Query: 102 SCGVPVCPSILVNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G PV  S +V+      Q    +  P V++P       G   +  ++ +         
Sbjct: 138 DLGEPVPESDIVHSVEAAVQFASQLGYPLVVRPAYTLGGTGGGFVHNEKELRHIADAGLK 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   Q LIE+ + G  E+   VM DAS +   +   ++      +   + +S  V P +
Sbjct: 198 MSPVHQCLIERSIAGFKEIEYEVMRDASDNAIVVCAMEN---IDPVGIHTGDSVVVAPVQ 254

Query: 219 -IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +     + ++  +    +A+   G        DP S   + +E+N 
Sbjct: 255 TLTDRENQMLRDASLRIIRALKICGGCNVQLALDPQSFSYYVIEVNP 301



 Score = 72.5 bits (177), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 43/284 (15%), Positives = 99/284 (34%), Gaps = 33/284 (11%)

Query: 22  CASALEDAGFKVSQID-------VDRSVGLVLAHLKP---DL--AFNVLH------GNFG 63
           C   L+  G++   I+        D S+   L        D+    N+ H         G
Sbjct: 577 CVETLKKEGYEAIVINNNPETVSTDFSISDKLYFEPLTTEDVMNVINLEHPLGVIVQFGG 636

Query: 64  EDGL-VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC--PSILVNRFTMDS 120
           +  + + A L+   +    + +     + D+   +  +   G+P     + +     +  
Sbjct: 637 QTAINIAASLQERGVKILGTSLKNIDKAEDRHEFETALQELGIPQPQGDTAVTVDQALVI 696

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW-NHGDQLLIEQYVDGIELTC 179
            + I  P +++P        + ++  D  + + +  +    +H   +L+++YV G EL  
Sbjct: 697 ANQIGYPVLVRPSYVLGGRAMEIVHNDDELKVYMSTAVKEISHDAPILVDRYVVGKELET 756

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAI 238
             + D         +   +           +S  V P +I    + + +   A    +  
Sbjct: 757 DAIADGENVYIPGVMEHIERAGIHS----GDSISVYPTQIISDQVKETIIDYAERIGRGF 812

Query: 239 GCRGISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277
              G+    F+ D  + KV+ LE+N       P ++ ++  P  
Sbjct: 813 HFIGLYNIQFIVDK-NNKVYVLEVNPRSSRTVPFLSKITSVPMS 855


>gi|256419971|ref|YP_003120624.1| carbamoyl phosphate synthase large subunit [Chitinophaga pinensis
           DSM 2588]
 gi|256034879|gb|ACU58423.1| carbamoyl-phosphate synthase, large subunit [Chitinophaga pinensis
           DSM 2588]
          Length = 939

 Score = 72.5 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 53/279 (18%), Positives = 102/279 (36%), Gaps = 37/279 (13%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG   A +L + G +V  I+ +                      S+  +L   + D    
Sbjct: 29  SGSQAARSLREEGIRVVLINSNPATIMTDPMMADKVYLLPLTVESIEQILEEQQIDAVLP 88

Query: 57  VLHGNFG-----EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
            + G        E   +  I E   +      I A   + D+ + +Q +   GVPV P+ 
Sbjct: 89  TMGGQTALNLCKEVDEL-GIWEKFNVRLIGVDIKAIDKAEDREQFRQWMIRLGVPVAPAK 147

Query: 112 LVNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
             N F    +    I  P VI+P       G   +   + +   L +    +   ++L+E
Sbjct: 148 TANSFLEGKEFAQEIGFPLVIRPSFTLGGTGGGFVHSKEDLDEALQRGLQASPIHEVLVE 207

Query: 170 QYVDG-IELTCGVMGDASLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPAK-IPLDIYKE 226
           + V G  E    ++ D + +V  I   ++ D           +S  V PA  +    +++
Sbjct: 208 KAVLGWKEFELELLRDKNDNVVIICTVENLDPMGVHT----GDSITVAPAMTLSDTAFQD 263

Query: 227 VQRLAFLAHQAIG-CRGISRSDFLFDPLSRKVFWLEINV 264
           ++  A +  + +G   G     F  +P + ++  +EIN 
Sbjct: 264 MRNKAIMMMRDLGNFAGGCNVQFSLNPENEELIAIEINP 302



 Score = 67.5 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/198 (14%), Positives = 70/198 (35%), Gaps = 12/198 (6%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTMDSQHLISPPYV 129
           LE   I    +      ++ D+ R  +++    +P             ++    +  P +
Sbjct: 651 LEENGIRIIGTSFDNMDIAEDRGRFSELLEDLKIPFPKYGTAYNTDDAIEVAKEVGYPVL 710

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC--GVMGDASL 187
           ++P        + ++  ++ +   +L       G+++LI+ ++D  +     G+    + 
Sbjct: 711 VRPSYVLGGQRMRIVINEEELESSVLSLLKHLPGNKILIDHFLDRCQEAEIDGIFDGENF 770

Query: 188 DVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRS 246
            V  +         +       +S  VLPA  +       ++  A    +A+  RG+   
Sbjct: 771 HVMGVMEHIEPAGIHS-----GDSNAVLPAFNLSPMEVTTMEYYAEKIARALDIRGLINI 825

Query: 247 DFLFDPLSRKVFWLEINV 264
            F       +VF +E N 
Sbjct: 826 QFAI--KGGQVFVIEANP 841


>gi|190894038|ref|YP_001984332.1| putative D-alanine-D-alanine ligase protein [Rhizobium etli CIAT
           652]
 gi|190699699|gb|ACE93782.1| putative D-alanine-D-alanine ligase protein [Rhizobium etli CIAT
           652]
          Length = 126

 Score = 72.5 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 27/110 (24%), Positives = 51/110 (46%), Gaps = 7/110 (6%)

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           ++GD  L    I      FY   LK  S++  H +P  +     + ++      ++ + C
Sbjct: 6   IIGDVVLFDLPIGW---RFYDDRLKQRSVD-EHAIPKILQGPAAERIRDDVLRLYKQLDC 61

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +G+ R DF+++       +LE+N  PG+ P S  P     + +SF +L+ 
Sbjct: 62  KGLVRFDFIYN--DGAPVYLEVNTIPGLLPESNAPLSFQ-SRFSFEDLIT 108


>gi|114650522|ref|XP_001148084.1| PREDICTED: propionyl-Coenzyme A carboxylase, alpha polypeptide
           isoform 2 [Pan troglodytes]
          Length = 640

 Score = 72.5 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 75/220 (34%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      L   ++ +      A     DK+ SK +     V   P    
Sbjct: 138 AVHPGYGFLSENKEFARCLAAEDVVFIGPDTHAIQAMGDKIESKLLAKKAEVNTIPGFDG 197

Query: 112 LVNRFTMDS--QHLISPPYVIKPLKGGSSLGIIVIKKDQS----IPLDLLQSSSWNHGDQ 165
           +V            I  P +IK   GG   G+ +   D+       L   +++S    D+
Sbjct: 198 VVKDAEEAVRIAREIGYPVMIKASAGGGGKGMRIAWDDEETRDGFRLSSQEAASSFGDDR 257

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           LLIE+++D    +   V+GD   +   +   +        K             +  +  
Sbjct: 258 LLIEKFIDNPRHIEIQVLGDKHGNALWLNERECSIQRRNQK----VVEEAPSIFLDAETR 313

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +   A    +A+        +FL D      ++LE+N 
Sbjct: 314 RAMGEQAVALARAVKYSSAGTVEFLVDSKKN-FYFLEMNT 352


>gi|291536829|emb|CBL09941.1| carbamoyl-phosphate synthase, large subunit [Roseburia intestinalis
           M50/1]
 gi|291539132|emb|CBL12243.1| carbamoyl-phosphate synthase, large subunit [Roseburia intestinalis
           XB6B4]
          Length = 1068

 Score = 72.5 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 35/225 (15%), Positives = 82/225 (36%), Gaps = 13/225 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTMDSQHLISPPYV 129
           L  + +    +       + D+    +++    +P      +       +  + +  P +
Sbjct: 647 LMKMGVKILGTKAEDVDAAEDRELFDEILEKTQIPRAAGGTVFTAEEAKEVANRLGYPVL 706

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           ++P       G+ +   D  I   +   +       +L+++Y+ G E+      DA  D 
Sbjct: 707 VRPSYVLGGQGMKIAFNDDEIEEFIGIINRIAQDHPILVDKYLQGKEIEV----DAVCDG 762

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           T+I +P    +       S +S  V PA  I   + + +        QA+   G+    F
Sbjct: 763 TDILIPGIMEHIERTGVHSGDSISVYPAPTISDHVKETIVEYTKRLAQALHVIGLINIQF 822

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +   +  +V+ +E+N +   T     P ++   G    +L   ++
Sbjct: 823 I--AMDEQVYVIEVNPRSSRT----VPYISKVTGIPIVDLATKVI 861



 Score = 60.1 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 46/286 (16%), Positives = 100/286 (34%), Gaps = 33/286 (11%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQID-------VDRSVGLV-------------- 45
           G ++E + +   G     +L++ G +V  ++        D+ +                 
Sbjct: 21  GQAAEFDYA---GTQACRSLKEEGVEVVLVNSNPATIMTDKDIADQVYIEPLTVSVLEKI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +A  KPD     L G  G +  ++     ILE   +    +       + D+   K  + 
Sbjct: 78  IAKEKPDSVLPTLGGQAGLNLGMELEEKGILEKYNVRLIGTTAETIFKAEDRQAFKDTME 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G P   S +V+  +  +   + I  P V++P       G  +   +  +   L     
Sbjct: 138 KIGEPCAASQVVHNVQDGIKFTNTIGYPVVLRPAYTLGGSGGGIAHNETELVEILTNGLR 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   ++L+E+ + G  E+   VM DA+ +   I V   +       ++  +        
Sbjct: 198 LSRVGEVLVERCIAGWKEIEYEVMRDANGN--CITVCNMENIDPVGVHTGDSIVVAPSQT 255

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +    Y+ ++  A      +   G     +  +P S +   +E+N 
Sbjct: 256 LGDKEYQMLRTSALNIISELNITGGCNVQYALNPDSFEYCVIEVNP 301


>gi|291279663|ref|YP_003496498.1| pyruvate carboxylase [Deferribacter desulfuricans SSM1]
 gi|290754365|dbj|BAI80742.1| pyruvate carboxylase [Deferribacter desulfuricans SSM1]
          Length = 1144

 Score = 72.5 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 36/198 (18%), Positives = 76/198 (38%), Gaps = 15/198 (7%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---ISPPYVIKP 132
            I +         +  DK  +K +   CGVPV     +     +++ L   I  P +IK 
Sbjct: 101 GIKFIGPSPETIKIFGDKKIAKDLAKECGVPVIEGSDIINSLEEAKSLAKSIGYPLMIKA 160

Query: 133 LKGGSSLGIIVIKKDQSIPL--DLLQSSSWN--HGDQLLIEQYVD-GIELTCGVMGDASL 187
             GG   GI ++  ++ +    D  +S ++     D +++E+Y++    +   ++ D   
Sbjct: 161 TAGGGGRGIRIVHNEKELAENFDSAKSEAFKAFANDDVILEKYIEKPKHIEVQLLADKYG 220

Query: 188 DVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRS 246
           ++  +            K        + PA  IP  +  ++   A    +       +  
Sbjct: 221 NIVHLYERDCSIQRRHQKL-----IEIAPAFTIPEKVLNQMYEAAIEIGKKSHLVSAATV 275

Query: 247 DFLFDPLSRKVFWLEINV 264
           +FL D  +   ++LE+N 
Sbjct: 276 EFLVDK-NNNFYFLEVNP 292


>gi|45357999|ref|NP_987556.1| RimK domain-containing protein [Methanococcus maripaludis S2]
 gi|44920756|emb|CAF29992.1| putative SSU ribosomal protein S6 modification protein
           [Methanococcus maripaludis S2]
          Length = 316

 Score = 72.5 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 32/223 (14%), Positives = 83/223 (37%), Gaps = 34/223 (15%)

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIKPLKGGSSLGII 142
           +  DK+     +    VP+  +  + +   + ++L      I  P ++K      S+ + 
Sbjct: 88  ICADKINMYLHMMKNNVPLPKTKFLRKSENNFENLKSIVEEIGLPLILKEPSTSFSMRVE 147

Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLI-EQYVDGI-ELTCGVMGDASLDVTEIAVPKSDF- 199
            +   +        +S +     +L+ +++++   +   G++    +   +  +PK  F 
Sbjct: 148 KVNSLEEFS---KVASRFLRLSDVLVAQEFIETRFDWRVGILNGEVIYACKYLIPKDTFK 204

Query: 200 ----YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255
                     Y  + S          ++ KEV + A  A  A+G       D        
Sbjct: 205 IQDCVDGHRVYCMVESVMY------DEVPKEVIKTALKAANAVGTGLYG-VD--LKEKDG 255

Query: 256 KVFWLEINVQPGM--TPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            ++ +E+N  P +  T    +PE        + +++ ++++D+
Sbjct: 256 SIYVIEVNDNPSLETTEDEFYPEA-------YSKIVSYIMDDS 291


>gi|268580197|ref|XP_002645081.1| C. briggsae CBR-PCCA-1 protein [Caenorhabditis briggsae]
 gi|74846243|sp|Q612F5|PCCA_CAEBR RecName: Full=Propionyl-CoA carboxylase alpha chain, mitochondrial;
           Short=PCCase subunit alpha; AltName:
           Full=Propanoyl-CoA:carbon dioxide ligase subunit alpha;
           Flags: Precursor
 gi|187026171|emb|CAP34639.1| CBR-PCCA-1 protein [Caenorhabditis briggsae AF16]
          Length = 738

 Score = 72.5 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 84/221 (38%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+    A LE     +      A     DK+ SK++ ++  V + P    
Sbjct: 138 AVHPGYGFLSENTKFAAELEKAGAKFIGPNSKAILDMGDKIHSKKIATAARVSMIPGYDG 197

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGD 164
            I    F +     I  P +IK   GG   G+ V   D+             +SS+   D
Sbjct: 198 EIPEEDFCVKVSREIGYPVMIKASAGGGGKGMRVAWNDKQAREGYRLSKQEAASSFG-DD 256

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           ++L+E+++D    +   ++ D   +   +   +        K           + +P ++
Sbjct: 257 RMLVEKFIDNPRHIEMQILCDKHGNALWLNERECSIQRRNQK----VIEEAPSSFVPPEM 312

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +++   A    +A+G       +FL D   R  ++LE+N 
Sbjct: 313 RRKMGEQAVQLAKAVGYDSAGTVEFLVDSQ-RNFYFLEMNT 352


>gi|302037857|ref|YP_003798179.1| carbamoyl-phosphate synthase large subunit [Candidatus Nitrospira
           defluvii]
 gi|300605921|emb|CBK42254.1| Carbamoyl-phosphate synthase, large subunit [Candidatus Nitrospira
           defluvii]
          Length = 1089

 Score = 72.5 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 55/278 (19%), Positives = 99/278 (35%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVDRS------------VGLVLAHLKPDLAFN 56
           SG     AL++ G++V  I         D D +            V  V+   +PD    
Sbjct: 29  SGTQACKALKEEGYRVILINSNPATIMTDPDFADRTYIEPITLDVVEKVIECERPDALLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +    + +LE   +    + I A   + D+   +Q +   G+ V  S +
Sbjct: 89  TMGGQTALNTAIGLAKRGVLEKYGVRLIGASIAAIHKAEDRDAFRQAMWKIGLRVPDSGV 148

Query: 113 VNRFTMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                   + L  I  P +++P       G  +    +     +    S +   Q+LIEQ
Sbjct: 149 ATSLAEAERELERIRFPAIVRPSFTMGGTGGNIAYNIEEFRTQVEWGLSMSPVRQVLIEQ 208

Query: 171 YVDG-IELTCGVMGD-ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEV 227
            V G  E    VM D     V    +   D           +S  V PA  +    Y+ +
Sbjct: 209 SVIGWKEFELEVMRDLKDNVVIICPIENLDPMGVHT----GDSITVAPALTLTDKEYQML 264

Query: 228 QRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
           +  A    + IG   G +   F  +P++ ++  +E+N 
Sbjct: 265 RDAAVRIIREIGVDTGGANIQFGLNPVNGEMVVIEMNP 302



 Score = 49.7 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 31/196 (15%), Positives = 74/196 (37%), Gaps = 8/196 (4%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           L    +    +   A   + D+ R ++++   G+    S + +     +     I+ P +
Sbjct: 669 LSRAGVRILGTSPDAIDRAEDRARFRELLDKLGLRQAESGMAHSVEEALTIAAEITYPVM 728

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           ++P        + ++  +  +   +  +   +    +LI++Y+        +  DA  D 
Sbjct: 729 VRPSYVLGGRSMQIVYDEAGLLHYMNTAVKASEKHPVLIDKYL---RDAIEIDADAISDG 785

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           T + V     +  E    S +S   LP   +   I +E++R        +G  G+  + F
Sbjct: 786 TTVVVAGIMEHIEEAGVHSGDSACSLPPYTLDATIIEEIRRQMTALALELGVIGLMNAQF 845

Query: 249 LFDPLSRKVFWLEINV 264
                 + ++ LE+N 
Sbjct: 846 AV--KDQTIYVLEVNP 859


>gi|256825106|ref|YP_003149066.1| carbamoyl-phosphate synthase large subunit [Kytococcus sedentarius
           DSM 20547]
 gi|256688499|gb|ACV06301.1| carbamoyl-phosphate synthase large subunit [Kytococcus sedentarius
           DSM 20547]
          Length = 1118

 Score = 72.5 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 53/278 (19%), Positives = 96/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG      L + G +V  I         D +              V  ++A  +PD    
Sbjct: 29  SGTQACRVLREEGLRVILINSNPATIMTDPEFADATYVEPITPEVVERIIAAERPDAVLA 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G    +  +      +LE    P   + + A  L  D+   K VV  CG  V  S++
Sbjct: 89  TLGGQTALNCAIDLHEAGVLEKYGCPLIGANVEAIQLGEDRQLFKGVVERCGADVARSVI 148

Query: 113 VNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     +     +  P V++P      LG      +  +          +   ++L+E+
Sbjct: 149 CHTMDELLAGAEELGYPLVLRPSFTMGGLGSGFAHNEDELRRMGQAGLRDSPTTEVLLEE 208

Query: 171 YVDG-IELTCGVMGDASL-DVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEV 227
            + G  E    VM D +   V   ++   D           +S  V PA  +    Y+++
Sbjct: 209 SILGWKEYELEVMRDRADNVVVVCSIENLDPMGVHT----GDSITVAPALTLTDREYQKL 264

Query: 228 QRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
           + +A    + +G   G     F  +P   +V  +E+N 
Sbjct: 265 RDVAIKVIREVGVDTGGCNIQFAVNPADGRVIVIEMNP 302



 Score = 61.3 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 44/270 (16%), Positives = 94/270 (34%), Gaps = 39/270 (14%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH---------------G 60
           AL +AG+    +         D D S  L    L  +    V H               G
Sbjct: 589 ALREAGYDTVMVNCNPETVSTDYDTSSRLYFEPLTLEDVLEVYHAEAAAGPIAGVIVQLG 648

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
                GL QA+ +   +P   +   A   + D+    +V++  G+               
Sbjct: 649 GQTPLGLAQALAD-AGLPVVGTSPEAIDRAEDRGHFGRVLAEAGLVAPRFGTAFSADEAV 707

Query: 121 Q--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIEL 177
                I  P +++P       G+ ++  D+S+   + +++  +    +L+++++D  IE+
Sbjct: 708 AISQDIGYPVLVRPSYVLGGRGMEIVYDDESLRGYVERAALVSPDRPILVDRFLDEAIEI 767

Query: 178 TCGVMGDAS---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
               + D +   L      + ++  +S        ++  + P  +  +    V+      
Sbjct: 768 DVDALYDGTDLYLGGIMEHIEEAGIHS------GDSACVIPPVTLGTEELDRVRAATRRL 821

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + IG RG+    F        ++ LE N 
Sbjct: 822 AEGIGVRGLLNVQFAL--AQGVLYVLEANP 849


>gi|222529530|ref|YP_002573412.1| carbamoyl-phosphate synthase large subunit [Caldicellulosiruptor
           bescii DSM 6725]
 gi|222456377|gb|ACM60639.1| carbamoyl-phosphate synthase, large subunit [Caldicellulosiruptor
           bescii DSM 6725]
          Length = 1077

 Score = 72.5 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 27/232 (11%), Positives = 82/232 (35%), Gaps = 18/232 (7%)

Query: 68  VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTMDSQHLIS 125
           + + L    +    + + +   + D+ +   ++ +  +P  P          +     I 
Sbjct: 646 MASYLAKNGVKILGTSMESIDTAEDRDKFLNLLKNLNIPYPPGGAAYSLEDAVKVAQQIG 705

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            P +++P        + ++   + +   +  +   +    +LI++Y+ G E     + D 
Sbjct: 706 YPVLVRPSYVLGGRAMEIVYSREELEKYIKAAIEISIKHPILIDKYILGKEAEVDGISDG 765

Query: 186 S---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCR 241
               +      + ++  +S        +S  V P   +   + +++        +A+   
Sbjct: 766 EDVLIPGIMEHIERAGVHS-------GDSMAVFPPHTLSERVKEKIVDYTIKLARALRVV 818

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           G+    F+ D     V+ +E+N +   T     P ++   G    ++   ++
Sbjct: 819 GLFNIQFVIDKDEN-VYVIEVNPRASRT----VPILSKVTGIPMIKIATKLI 865



 Score = 65.9 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 48/288 (16%), Positives = 108/288 (37%), Gaps = 37/288 (12%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFN---------- 56
           G ++E + S   G     AL++ G +V  ++ + +  +    +  D  +           
Sbjct: 21  GQAAEFDYS---GTQACRALKEEGIEVVLVNSNPATIMTDTEI-ADRVYIEPISVDYIEE 76

Query: 57  ---------VLHGNFGEDG-------LVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
                    +L G  G+             ILE   +    + +     + D+   K+ +
Sbjct: 77  IIKKERPQGLLAGLGGQTALNMAFELAEAGILEKYGVCLLGTSLETIKKAEDRELFKKTM 136

Query: 101 SSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS 158
              G PV  SI+ +  +  ++    +  P +++P       G  +   ++ +     +  
Sbjct: 137 IEIGEPVPKSIIAHSVQEAIEFAREVGYPVIVRPAYTLGGTGGGIAYNEEELRYIASKGL 196

Query: 159 SWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
             +   Q+LIEQ V G  E+   VM D++ +   I V   +     +   + +S  V P+
Sbjct: 197 KLSLIHQVLIEQSVLGWKEIEYEVMRDSNDN--CITVCNMENID-PVGIHTGDSIVVAPS 253

Query: 218 K-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +    Y+ ++  +    +++   G     F  +P S +   +E+N 
Sbjct: 254 QTLSDKEYQMLRSASLNIIRSLKIEGGCNVQFALNPNSMEYVVIEVNP 301


>gi|315612922|ref|ZP_07887833.1| carbamoyl-phosphate synthase, large subunit [Streptococcus
           sanguinis ATCC 49296]
 gi|315315032|gb|EFU63073.1| carbamoyl-phosphate synthase, large subunit [Streptococcus
           sanguinis ATCC 49296]
          Length = 1058

 Score = 72.5 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 26/228 (11%), Positives = 77/228 (33%), Gaps = 19/228 (8%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYV 129
           L    +    + +     + D+   +Q +    +P  P            +   I  P +
Sbjct: 646 LAKAGVTILGTQVADLDRAEDRDLFEQALKDLDIPQPPGQTATNEEEAVLAARKIGFPVL 705

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS--- 186
           ++P        + +++ ++ +   +  +   +    +L++ Y+ G E     + D     
Sbjct: 706 VRPSYVLGGRAMEIVENEKDLRSYMGTAVKASPDHPVLVDSYIVGQECEVDAISDGKNVL 765

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISR 245
           +      + ++  +S        +S  V P + +   + + +          + C G+  
Sbjct: 766 IPGIMEHIERAGVHS-------GDSMAVYPPQTLSQKVQETIADYTKRLAIGLNCLGMMN 818

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
             F+      KV+ +E+N +   T     P ++        ++   ++
Sbjct: 819 IQFVI--KDEKVYVIEVNPRASRT----VPFLSKVTNIPMAQVATKLI 860



 Score = 70.2 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 54/302 (17%), Positives = 115/302 (38%), Gaps = 37/302 (12%)

Query: 20  KACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNVL 58
           +AC S L++ G++V  ++        D+ +                +L   +PD     L
Sbjct: 32  QACLS-LKEEGYEVVLVNSNPATIMTDKEIADKVYIEPITLEFVTRILRKERPDALLPTL 90

Query: 59  HGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
            G  G +  ++     IL+ L +    + + A   + D+   KQ++     P+  S +VN
Sbjct: 91  GGQTGLNMAMELSKNGILDELGVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIVN 150

Query: 115 --RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                +     I  P +++P       G  +   ++ +          +   Q LIE+ +
Sbjct: 151 TVEEAVAFAASIGYPVIVRPAFTLGGTGGGMCANEEELREIAENGLKLSPVTQCLIERSI 210

Query: 173 DG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRL 230
            G  E+   VM D++ +   + V   + +   +   + +S    PA+ +     + ++  
Sbjct: 211 AGFKEIEYEVMRDSADNA--LVVCNMENFD-PVGIHTGDSIVFAPAQTMSDYENQMLRDA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    +A+   G        DP S K + +E+N  P ++  S     +   GY   +L  
Sbjct: 268 SLSIIRALKIEGGCNVQLALDPHSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325


>gi|312127411|ref|YP_003992285.1| carbamoyl-phosphate synthase, large subunit [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311777430|gb|ADQ06916.1| carbamoyl-phosphate synthase, large subunit [Caldicellulosiruptor
           hydrothermalis 108]
          Length = 1077

 Score = 72.5 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 27/232 (11%), Positives = 82/232 (35%), Gaps = 18/232 (7%)

Query: 68  VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTMDSQHLIS 125
           + + L    +    + + +   + D+ +   ++ +  +P  P          +     I 
Sbjct: 646 MASYLAKNGVKILGTSMESIDTAEDRDKFLNLLKNLNIPYPPGGAAYSLEDAVRVAEKIG 705

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            P +++P        + ++   + +   +  +   +    +LI++Y+ G E     + D 
Sbjct: 706 YPVLVRPSYVLGGRAMEIVYSREELEKYIKAAIEISIKHPILIDKYILGKEAEVDGISDG 765

Query: 186 S---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCR 241
               +      + ++  +S        +S  V P   +   + +++        +A+   
Sbjct: 766 EDVLIPGIMEHIERAGVHS-------GDSMAVFPPHTLSERVKEKIVDYTIKLARALRVV 818

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           G+    F+ D     V+ +E+N +   T     P ++   G    ++   ++
Sbjct: 819 GLFNIQFVIDKDEN-VYVIEVNPRASRT----VPILSKVTGIPMIKIATKLI 865



 Score = 65.5 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 48/288 (16%), Positives = 108/288 (37%), Gaps = 37/288 (12%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFN---------- 56
           G ++E + S   G     AL++ G +V  ++ + +  +    +  D  +           
Sbjct: 21  GQAAEFDYS---GTQACRALKEEGIEVVLVNSNPATIMTDTEI-ADRVYIEPISVDYIEE 76

Query: 57  ---------VLHGNFGEDG-------LVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
                    +L G  G+             ILE   +    + +     + D+   K+ +
Sbjct: 77  IIKKERPQGLLAGLGGQTALNMAFELAEAGILEKYGVSLLGTSLETIKKAEDRELFKKTM 136

Query: 101 SSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS 158
              G PV  SI+ +  +  ++    +  P +++P       G  +   ++ +     +  
Sbjct: 137 IEIGEPVPKSIIAHSVQEAIEFAREVGYPVIVRPAYTLGGTGGGIAYNEEELRYIASKGL 196

Query: 159 SWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
             +   Q+LIEQ V G  E+   VM D++ +   I V   +     +   + +S  V P+
Sbjct: 197 KLSLIHQVLIEQSVLGWKEIEYEVMRDSNDN--CITVCNMENID-PVGIHTGDSIVVAPS 253

Query: 218 K-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +    Y+ ++  +    +++   G     F  +P S +   +E+N 
Sbjct: 254 QTLSDKEYQMLRSASLNIIRSLKIEGGCNVQFALNPNSMEYVVIEVNP 301


>gi|121533983|ref|ZP_01665809.1| pyruvate carboxylase [Thermosinus carboxydivorans Nor1]
 gi|121307494|gb|EAX48410.1| pyruvate carboxylase [Thermosinus carboxydivorans Nor1]
          Length = 1146

 Score = 72.5 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 46/279 (16%), Positives = 103/279 (36%), Gaps = 30/279 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQ--IDVDRSVGLVLAHLKPDLAFNVL 58
           +AV     S E  +SL   KA  + L   G    +  +D+D S+  V      D     +
Sbjct: 31  VAV----YSKEDNLSLHRYKADEAYLIGEGKSPVEAYLDID-SIINVAKKNNVD----AI 81

Query: 59  HGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR 115
           H  +G   E+  +        + +    +    +  DK++++    + G+P+ P      
Sbjct: 82  HPGYGFLAENMDLAKRCAEEGLIFIGPRLEHLNMFGDKIKARNQAITAGLPIIPGTDGPV 141

Query: 116 FTMDSQHLI----SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQLL 167
            ++D           P +IK   GG   G+ +++  +S+     ++ S        D++ 
Sbjct: 142 QSIDEVKAFAMKHGFPIIIKASAGGGGRGMRIVRGPESLSEAYHRAKSEAKTSFGNDEIY 201

Query: 168 IEQYVDGI-ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYK 225
           +E+ ++    +   ++GDA  ++  +           ++        + P       + +
Sbjct: 202 VEKLLENTKHIEVQILGDAEGNIVHLYE-----RDCSVQRRHQKMVEIAPSIAFSDSLRQ 256

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            V   A    + +        +FL  P   K +++E+N 
Sbjct: 257 AVCDAAVKLMKHVNYLSAGTVEFLVTP-DEKFYFIEVNP 294


>gi|157826017|ref|YP_001493737.1| propionyl-CoA carboxylase alpha chain precursor [Rickettsia akari
           str. Hartford]
 gi|157799975|gb|ABV75229.1| propionyl-CoA carboxylase alpha chain precursor [Rickettsia akari
           str. Hartford]
          Length = 665

 Score = 72.5 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 41/221 (18%), Positives = 81/221 (36%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+     IL+   +              DK+ +K++    GV   P  + 
Sbjct: 81  AVHPGYGFLSENPNFANILKRDGVVLIGPSAGTIKKMGDKIEAKKIAIEAGVSTVPGYMG 140

Query: 114 N----RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD-----LLQSSSWNHGD 164
                +  +D    I  P ++K   GG   G+ V+     +        L  ++S++  D
Sbjct: 141 TINDVKQAVDIAKEIGFPVIVKAAAGGGGRGMRVVNNPAEMANAFESAKLEAANSFS-DD 199

Query: 165 QLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           +L IE+ +     +   ++ D   +   +   +     +  K           A I  DI
Sbjct: 200 RLFIEKLIQTPRHIEIQLIADQYGNSVCLGERECSIQRHHQK----VIEEAPSAFITEDI 255

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +E+ R      Q +G       +F+ D  +R  ++LE+N 
Sbjct: 256 RQEMYRQVISLSQKVGYYSAGTVEFIVD-SNRNFYFLEMNT 295


>gi|262281599|ref|ZP_06059377.1| acetyl-/propionyl-coenzyme A carboxylase subunit alpha
           [Acinetobacter calcoaceticus RUH2202]
 gi|262256975|gb|EEY75715.1| acetyl-/propionyl-coenzyme A carboxylase subunit alpha
           [Acinetobacter calcoaceticus RUH2202]
          Length = 646

 Score = 72.5 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 33/198 (16%), Positives = 69/198 (34%), Gaps = 14/198 (7%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD----SQHLISPPYVIK 131
           +I +      A  L   K  SK  +   GVP  P    +R  ++        I  P ++K
Sbjct: 100 QITFIGPTASAIELMGSKRLSKIAMIEAGVPCVPGYEGDRQDLEYLATQAEQIGYPLMVK 159

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSS-----SWNHGDQLLIEQYVDGIELTCGVMGDAS 186
              GG   G+ ++++   +   L  +      ++  G+ +L +  +    +   V  D  
Sbjct: 160 ASAGGGGRGMRLVEQSSQLVEALQTARSEAENAFGSGELILEKAVIAPRHVEIQVFCDTH 219

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRS 246
            +   +            K             +  ++ +++   A  A +A    G    
Sbjct: 220 GNYVYLFERDCSIQRRHQK----VVEEAPCPVMTPELRQKMGEAAVAAAKACAYVGAGTV 275

Query: 247 DFLFDPLSRKVFWLEINV 264
           +FL D    + ++LE+N 
Sbjct: 276 EFLLDAS-GEFYFLEMNT 292


>gi|296104972|ref|YP_003615118.1| acetyl-CoA carboxylase biotin carboxylase subunit [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
 gi|295059431|gb|ADF64169.1| acetyl-CoA carboxylase biotin carboxylase subunit [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
          Length = 449

 Score = 72.5 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 42/222 (18%), Positives = 81/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         L  DK+ +   +   GVP  P    
Sbjct: 77  AIHPGYGFLSENANFAEQVERSGFIFIGPKADTIRLMGDKVSAITAMKKAGVPTVPGSDG 136

Query: 112 -LVNRFTMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
            L +    +  H   I  P +IK   GG   G+ V++ D  +   +     ++ +    D
Sbjct: 137 PLTDDMDANRAHAKRIGYPVIIKASGGGGGRGMRVVRSDAELAQSISMTKAEAKAAFSND 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+Y++    +   V+ D   +   +A           K          PA  I  +
Sbjct: 197 MVYMEKYLENPRHIEIQVLADGQGNAIYLAERDCSMQRRHQK-----VVEEAPAPGITPE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + + +      A   IG RG    +FLF   + + +++E+N 
Sbjct: 252 LRRYIGERCAKACVDIGYRGAGTFEFLF--ENGEFYFIEMNT 291


>gi|256810529|ref|YP_003127898.1| acetyl-CoA carboxylase, biotin carboxylase [Methanocaldococcus
           fervens AG86]
 gi|256793729|gb|ACV24398.1| acetyl-CoA carboxylase, biotin carboxylase [Methanocaldococcus
           fervens AG86]
          Length = 501

 Score = 72.5 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 78/220 (35%), Gaps = 18/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+      ++     +      A      K+ +K+++   GVP+ P    
Sbjct: 77  AIHPGYGFLAENAEFARAVKKAGFEFIGPNPKAIEAMGSKINAKKIMKKAGVPLIPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGDQ 165
            +      ++    I  P V+K   GG  +G+ V    + +          + S      
Sbjct: 137 AVEDVDEAIEIAEAIGFPVVVKASAGGGGMGMSVAYSKEELKDVIESAKNIAKSAFGDPT 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+Y++    +   ++GD   ++  +   +        K             +  ++ 
Sbjct: 197 VFIEKYLENPRHIEIQLLGDKHGNIIHLGDRECSIQRRHQK----LIEEAPSPIMTEELR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +   A  A +AI        +FL+   +   ++LE+N 
Sbjct: 253 ERMGEAAIKAGKAINYDSAGTVEFLY--ENGNFYFLEMNT 290


>gi|226940889|ref|YP_002795963.1| cyanophycin synthetase [Laribacter hongkongensis HLHK9]
 gi|226715816|gb|ACO74954.1| ATP-grasp enzyme-like D-alanine-D-alanine ligase [Laribacter
           hongkongensis HLHK9]
          Length = 856

 Score = 72.5 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 25/111 (22%), Positives = 49/111 (44%), Gaps = 5/111 (4%)

Query: 88  ALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIV-I 144
           A++ DK  +K+++++ GVPV    +V+       +   I  P VIKP  G    G+ V +
Sbjct: 201 AIAQDKDLTKELLAAAGVPVPEGRIVSDGDAAWTAAEAIGLPVVIKPRDGNQGKGVAVNL 260

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195
                +      +   +    +++E+Y+ G +    V+GD  +       P
Sbjct: 261 TSRDEVLAAFAVAC--DICSDVIVERYLPGQDYRVLVVGDKMVAAARREPP 309


>gi|332982136|ref|YP_004463577.1| hypothetical protein Mahau_1566 [Mahella australiensis 50-1 BON]
 gi|332699814|gb|AEE96755.1| protein of unknown function DUF201 [Mahella australiensis 50-1 BON]
          Length = 329

 Score = 72.5 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 52/272 (19%), Positives = 95/272 (34%), Gaps = 39/272 (14%)

Query: 25  ALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAI--LELLEIPYTHS 82
              DAG+    +D+ R+ G+ L     +  FNVL         +Q     E        S
Sbjct: 61  NFNDAGYVDVLLDICRNEGVSLLIPLHEGEFNVL---------LQNRRRFEDAGCRLLLS 111

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGII 142
                ++  DK  +       GV    +IL              P  IKP  G  S    
Sbjct: 112 SEEVISICQDKYNTFLFFQQNGVNTPATILPEEIEY---RKTEFPLFIKPRNGMGSRYAY 168

Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSY 202
            I  ++ +           +    ++++++DG E T  V+ D    V    VP+      
Sbjct: 169 RITDERQL------RFFIEYVPCPIVQEFIDGTEYTVDVLCDMEGQVIS-TVPRERIEVK 221

Query: 203 ELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
           + + S   +       K   ++ ++++ +           G      + D     +F++E
Sbjct: 222 DGEISKGRTVKDWRIIKATTEVAEKLKAI-----------GPLTIQCIIDKNDN-IFFIE 269

Query: 262 INVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           IN + G       P +A  AG ++ +LL  M+
Sbjct: 270 INPRFG----GGVP-LAIEAGVNYPDLLAKML 296


>gi|329725353|gb|EGG61836.1| putative acetyl-CoA carboxylase, biotin carboxylase subunit
           [Staphylococcus epidermidis VCU144]
          Length = 453

 Score = 72.5 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 79/220 (35%), Gaps = 18/220 (8%)

Query: 56  NVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
           N +H  +G   E       +E   I +         +  DK+ ++Q V   GVPV P   
Sbjct: 76  NAIHPGYGFLSESTNFAKAVEDNHIHFIGPSKTTMEMMGDKITARQTVKQAGVPVIPGSN 135

Query: 113 VNRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS----WNHGD 164
               ++D        I  P V+K   GG   GI ++K+   +   L ++ S    + + D
Sbjct: 136 DAVQSVDEIKLLAKEIGFPVVLKAASGGGGKGIRIVKEASQLDQALKEAKSEGQKYFNDD 195

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           ++ +E ++     +   ++GD   +   +            + +         A +    
Sbjct: 196 RVYVEAFIPVAKHVEVQIIGDGKNNYVHLGERDCSV----QRKNQKLIEEAPCAALTEQR 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
              +   A    QA   R     +FL    +   +++E+N
Sbjct: 252 RTRICGDAVKVAQASRYRSAGTIEFLVTEDAH--YFIEMN 289


>gi|166032066|ref|ZP_02234895.1| hypothetical protein DORFOR_01769 [Dorea formicigenerans ATCC
           27755]
 gi|166027789|gb|EDR46546.1| hypothetical protein DORFOR_01769 [Dorea formicigenerans ATCC
           27755]
          Length = 448

 Score = 72.5 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 41/221 (18%), Positives = 80/221 (36%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  FG   E+     + E   I +            +K  +++ +   GVPV P    
Sbjct: 77  AIHPGFGFLSENSDFVRLCEEHGITFIGPSADVIDSMGNKSHARKTMMEAGVPVVPGTKD 136

Query: 114 NRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIP-----LDLLQSSSWNHGD 164
             + +++       I  P +IK   GG   G+ V +                ++++   D
Sbjct: 137 PVYDVETGEKLADEIGYPVMIKASSGGGGKGMRVSRSKDDFEFNFNMAQRESANAFG-DD 195

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            + IE+Y++    +   +M D   +V  +            K    +     PA I  + 
Sbjct: 196 TMYIEKYIENPRHVEIQIMADTHGNVVALGERDCSVQRNHQKLIEESP---SPA-ITANT 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              +   A LA +A+G       +F+ D  S   +++E+N 
Sbjct: 252 RASMNHDAVLAAKAVGYTNAGTIEFILD-QSGTYYFMEMNT 291


>gi|329119131|ref|ZP_08247822.1| acetyl-CoA carboxylase, biotin carboxylase [Neisseria bacilliformis
           ATCC BAA-1200]
 gi|327464762|gb|EGF11056.1| acetyl-CoA carboxylase, biotin carboxylase [Neisseria bacilliformis
           ATCC BAA-1200]
          Length = 455

 Score = 72.5 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 78/222 (35%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         L  DK+ +K  +   GVP  P    
Sbjct: 77  AVHPGYGFLAENASFAEQVEQSGFVFIGPHADTIRLMGDKVSAKHAMLEAGVPCVPGSDG 136

Query: 112 ---LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
                    + +   +  P +IK   GG   G+ V++K + +   +     ++ +     
Sbjct: 137 ALPDDPEAILKTAEKVGYPVIIKASGGGGGRGMRVVEKKEDLIKSVEMTKAEAGAAFGNP 196

Query: 165 QLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+Y+     +   V+ D   +   +            K          PA  I   
Sbjct: 197 MVYMERYLQRPRHVEIQVLADEHGNAIYLGERDCSMQRRHQK-----VIEEAPAPGITAK 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +++ +    A + IG RG    +FL+     + F++E+N 
Sbjct: 252 EREKIGKACVEACKRIGYRGAGTFEFLY--EDGEFFFIEMNT 291


>gi|294633961|ref|ZP_06712517.1| conserved hypothetical protein [Streptomyces sp. e14]
 gi|292829957|gb|EFF88310.1| conserved hypothetical protein [Streptomyces sp. e14]
          Length = 414

 Score = 72.5 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 39/201 (19%), Positives = 78/201 (38%), Gaps = 21/201 (10%)

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTMDSQHLISPPYVIKP 132
           L +P     +       DK R++  + +  VP   S+LV      + +   I  P V+KP
Sbjct: 96  LGLP--GGDLRCVERCRDKHRTRSALDAARVPQPRSVLVSGRAQALTAAEDIGYPVVVKP 153

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWN--------HGDQLLIEQYVDGIELTC-GVMG 183
                S G++      ++   +  + +          H   +L+E++  G E++   V+ 
Sbjct: 154 RALAGSFGVVRADSPTALVAAVEFTEASGAWAPDLPTHERNVLVEEFARGPEISVDSVVH 213

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR-G 242
             ++    +A  +  F           + HV+    PL     +  +   AH A+G   G
Sbjct: 214 RGTVTSVCLARKEVGFAPC-----FEETGHVVDPDDPLWSDATLMDVVVRAHGALGFTDG 268

Query: 243 ISRSDFLFDPLSRKVFWLEIN 263
           ++ ++    P   KV  +E+N
Sbjct: 269 VTHTEIRLTPAGPKV--IEVN 287


>gi|237808601|ref|YP_002893041.1| pyruvate carboxylase subunit A [Tolumonas auensis DSM 9187]
 gi|237500862|gb|ACQ93455.1| acetyl-CoA carboxylase, biotin carboxylase [Tolumonas auensis DSM
           9187]
          Length = 471

 Score = 72.5 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 34/221 (15%), Positives = 76/221 (34%), Gaps = 20/221 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            LH  +G   E+ L+  + +   I +            DK  +++ + + GVP  P    
Sbjct: 76  ALHPGYGFLSENPLLADLCDQHGIKFIGPSAEVIRRMGDKTEARRSMIAAGVPCTPGTEG 135

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGD 164
           N   +         I  P ++K   GG   GI      + +           + ++   +
Sbjct: 136 NLADLAEAISEAERIGYPIMLKATSGGGGRGIRRCNSREELEQAYPRVISEATKAFGSAE 195

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDI 223
             L +  V+   +   ++ D+  +   +            K        + P  ++  + 
Sbjct: 196 VFLEKCIVNPKHIEAQILADSFGNTVHLYERDCSIQRRNQKL-----IEIAPSPQLTPEQ 250

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              +  L+  A +A+G       +FL      +V+++E+N 
Sbjct: 251 RAYIGELSVRAAKAVGYENAGTVEFLLT--GDEVYFMEMNT 289


>gi|242797346|ref|XP_002482993.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
 gi|218719581|gb|EED19001.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
          Length = 389

 Score = 72.5 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 46/226 (20%), Positives = 83/226 (36%), Gaps = 23/226 (10%)

Query: 92  DKMRSKQVVSSCGVPVCP--SILVNRFTMDS--QHLISPPYVIKPLKGGSSLGIIVIKKD 147
           DK      +   G    P   +  N  T++     +   P V KP++G  S G+ +    
Sbjct: 153 DKAYLNGKLKELGGYTLPQSWLASNPATLEKCISSITKLPVVGKPVRGRGSHGVKLCHNP 212

Query: 148 QSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV---TEIAVPKSDFYSYEL 204
           + +   +L  S       ++IE+Y+ G E T  VM  +S      +   V + +      
Sbjct: 213 EELREHVL--SLLQESPLVMIEEYLAGEEATITVMPPSSEMPDYWSLPPVTRFNHADGVA 270

Query: 205 KYS-----SLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
            Y+     S NS  V  +++    Y +V        + I      R D        +   
Sbjct: 271 PYNGAVAVSANSRVVTESELRDLAYGKVINECVQVARLIRATAPIRIDARRFSEGSEFAL 330

Query: 260 LEINVQPGMT---------PVSIFPEMAAYAGYSFRELLLWMVEDA 296
            +IN++P MT           S+    A+  G+ +  LL+ ++  A
Sbjct: 331 FDINMKPNMTGPGRPGREDQASLTAIAASALGWDYGSLLMKILATA 376


>gi|71987519|ref|NP_501777.2| hypothetical protein F32B6.2 [Caenorhabditis elegans]
 gi|34555862|emb|CAB03038.2| C. elegans protein F32B6.2, partially confirmed by transcript
           evidence [Caenorhabditis elegans]
          Length = 671

 Score = 72.5 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 76/221 (34%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H  +G   E+           + +      A      K  SKQ++    VPV      
Sbjct: 94  AIHPGYGFLSENAGFAEKCAQAGLVFIGPPAQAIRDMGAKNVSKQIMEDAKVPVVKGFHG 153

Query: 113 ---VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
               +         I  P ++K + GG   G+ +   +      L  + +        D+
Sbjct: 154 EDQSDANLKKKSAEIGYPVMLKAVYGGGGKGMRIAWNEAEFEEKLASARNEAKKSFGNDE 213

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDI 223
           +L+E++V+    +   V GD   +   +           ++          PA  +  D 
Sbjct: 214 MLVEKFVEKPRHVEVQVFGDHHGNYVHLWE-----RDCSVQRRHQKIIEEAPAPNMEHDT 268

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             ++   A  A  A+G  G    +F+ DP   + +++E+N 
Sbjct: 269 RVKLGESAVRAAAAVGYVGAGTVEFIMDPR-GEFYFMEMNT 308


>gi|148260514|ref|YP_001234641.1| carbamoyl-phosphate synthase L chain, ATP-binding [Acidiphilium
           cryptum JF-5]
 gi|326403706|ref|YP_004283788.1| methylcrotonoyl-CoA carboxylase alpha subunit [Acidiphilium
           multivorum AIU301]
 gi|146402195|gb|ABQ30722.1| 3-methylcrotonoyl-CoA carboxylase, alpha subunit [Acidiphilium
           cryptum JF-5]
 gi|325050568|dbj|BAJ80906.1| methylcrotonoyl-CoA carboxylase alpha subunit [Acidiphilium
           multivorum AIU301]
          Length = 662

 Score = 72.5 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 74/221 (33%), Gaps = 20/221 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+           + +      A      K  +K ++   GVP+ P    
Sbjct: 77  AIHPGYGFLSENADFAEACAAAGLVFVGPPAEAIRAMGSKSAAKALMEQAGVPLVPGYHG 136

Query: 114 NRFT----MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
                     +   I  P +IK   GG   G+ V++       +L     ++ +    D+
Sbjct: 137 ADQDPAALARAAAEIGYPVLIKASAGGGGKGMRVVRAAADFAAELDRAKGEARAAFGDDR 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDI 223
           +L+E+Y+     +   V  D   +V  +            K          PA +    +
Sbjct: 197 VLVEKYLTKPRHIEIQVFADTHGNVVSLHERDCSIQRRHQK-----IVEEAPAPLIDEAM 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              + + A  A +AIG  G    +F+         ++E+N 
Sbjct: 252 RAAMGKTACDAARAIGYVGAGTVEFI--AEDGAFHFMEMNT 290


>gi|114563895|ref|YP_751409.1| carbamoyl-phosphate synthase L chain, ATP-binding [Shewanella
           frigidimarina NCIMB 400]
 gi|114335188|gb|ABI72570.1| 3-methylcrotonoyl-CoA carboxylase, alpha subunit [Shewanella
           frigidimarina NCIMB 400]
          Length = 676

 Score = 72.5 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 80/221 (36%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       E   I +   G  A      K  +K+++S   VP+ P    
Sbjct: 77  AIHPGYGFLSENAEFARKCEQNGIAFVGPGSDAIDAMGSKSAAKEIMSKANVPLVPGYHG 136

Query: 114 NRFT----MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
           +  T    +     +  P +IK   GG   G+ +++ D  I   +  +          D+
Sbjct: 137 DDQTDATLIAEAKAVGFPLLIKAAYGGGGKGMRIVENDGEILEAIKSARREASSSFGNDK 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           LL+E+Y+     +   V  D   +   ++           K          PA  +  ++
Sbjct: 197 LLMERYLRQPRHVEVQVFADTQGNAIYLSDRDCSIQRRHQK-----VVEEAPAPGLSDEL 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             ++   A  A +AI   G    +FL D      +++E+N 
Sbjct: 252 RAQMGNAAVAAAKAIDYVGAGTVEFLLDT-DNSFYFMEMNT 291


>gi|325854373|ref|ZP_08171572.1| phosphoribosylglycinamide formyltransferase 2 [Prevotella denticola
           CRIS 18C-A]
 gi|325484167|gb|EGC87101.1| phosphoribosylglycinamide formyltransferase 2 [Prevotella denticola
           CRIS 18C-A]
          Length = 393

 Score = 72.5 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 51/282 (18%), Positives = 92/282 (32%), Gaps = 46/282 (16%)

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD-----KMR 95
           ++  V+   +PDL    +     E         L++       I  SA +++     +  
Sbjct: 55  ALDAVVGFHEPDLIIPEIEAIRTE--------RLVDYERQGIQIAPSARAVNFTMNRRAI 106

Query: 96  SKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153
                S  G+          +    ++   I  P V+KPL   S  G   +  D  +   
Sbjct: 107 RDLAASELGLRTAKYFYAKTYEEFKEAADEIGFPCVVKPLMSSSGHGQSYVHNDDELQEA 166

Query: 154 LLQSSSWNHGD--QLLIEQYVDGIE----LTCGVMGDASLDVTEIA-VPKSDFYSYELKY 206
              +     GD  +++IE+++D       LT       +L    I  V K   Y      
Sbjct: 167 FKNAMEGARGDVKEVIIEEFIDFDSEFTLLTVTQKNGPTLFCPPIGHVQKGGDY------ 220

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
                    P  I  +  ++ + +A    +A+   GI   +F       +V + E++ +P
Sbjct: 221 ----RESWQPYTISDEALQQAEHMADEVTRALTGYGIWGVEFFLTKS-GEVIFSELSPRP 275

Query: 267 ---GM------TPVSIFPEMAAY-AGYSFRELLLWMVEDASC 298
              GM      T  S F        G     +    +E A C
Sbjct: 276 HDTGMVTLAHTTNFSEFELHFRAVMGLPIPAI---HLEHAGC 314


>gi|297526674|ref|YP_003668698.1| Carbamoyl-phosphate synthase L chain ATP-binding protein
           [Staphylothermus hellenicus DSM 12710]
 gi|297255590|gb|ADI31799.1| Carbamoyl-phosphate synthase L chain ATP-binding protein
           [Staphylothermus hellenicus DSM 12710]
          Length = 515

 Score = 72.5 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 44/238 (18%), Positives = 91/238 (38%), Gaps = 16/238 (6%)

Query: 34  SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDK 93
           S +D+D  V   +  L  D      +G   E+ L    +      +         L+ DK
Sbjct: 53  SYLDIDEIVDAAI-ELGSDAVHPG-YGFLSENPLFSKRIIEKGFIFIGPPPEIMELAGDK 110

Query: 94  MRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS-- 149
           +R+K++ +  GVP  P ++V+  +  ++       P ++K   GG  +GI ++K+ +   
Sbjct: 111 VRAKEMAAKAGVPTLPWMVVDDPKEVLEFGKEHGFPVILKAAGGGGGMGIRIVKRKEDVE 170

Query: 150 --IPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
                   ++ +     +L +E Y++    +   ++GD    V              L+ 
Sbjct: 171 RLFEQARKEAENAFKDQRLYVEPYIENPKHIEVQILGDGDNYVHLYE------RDCSLQR 224

Query: 207 SSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
                    P+  +   + K +   A      I        + LFD  ++K +++EIN
Sbjct: 225 RHQKIVEEAPSPILNNSLRKTITGDAVKLASFIKYVNAGTVEMLFDMKTKKHYFMEIN 282


>gi|196011792|ref|XP_002115759.1| hypothetical protein TRIADDRAFT_30016 [Trichoplax adhaerens]
 gi|190581535|gb|EDV21611.1| hypothetical protein TRIADDRAFT_30016 [Trichoplax adhaerens]
          Length = 1188

 Score = 72.5 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 45/253 (17%), Positives = 86/253 (33%), Gaps = 28/253 (11%)

Query: 22  CASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81
            A+ L  +      IDV +   +    + P   F   H +F      QA ++  +I +  
Sbjct: 97  VAAYLNSS----EIIDVAKQNNV--DAIHPGYGFLSEHVDFA-----QACVD-ADIKFIG 144

Query: 82  SGILASALSMDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGS 137
                     +K  ++    + GVPV P     I       +       P ++K   GG 
Sbjct: 145 PSPSIINKMGNKTEARNTAIAAGVPVVPGSKDAISSYEEAYEFCEEHGFPVILKAAFGGG 204

Query: 138 SLGIIVIKKDQSIPL----DLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEI 192
             G+ V+     +P        ++ +      L IE+Y++    +   ++GD        
Sbjct: 205 GRGMRVVTAADELPKLFETATSEAQTAFGNGSLFIEKYIEQPRHIEVQILGD-----LYN 259

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
            V         ++        V PA  +  D+ + +   A    Q +        +FL D
Sbjct: 260 NVVHLYERDCSVQRRHQKIIEVAPAFNLDPDLRERLTSDAVRLCQYVNYENAGTVEFLID 319

Query: 252 PLSRKVFWLEINV 264
              R  +++E+N 
Sbjct: 320 KDQRH-YFIEVNP 331


>gi|325276658|ref|ZP_08142388.1| acetyl-CoA carboxylase biotin carboxylase subunit [Pseudomonas sp.
           TJI-51]
 gi|324098202|gb|EGB96318.1| acetyl-CoA carboxylase biotin carboxylase subunit [Pseudomonas sp.
           TJI-51]
          Length = 451

 Score = 72.5 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 77/222 (34%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         L  DK+ +K  +   GVP  P    
Sbjct: 80  AIHPGYGFLAENADFAEQVEKSGFAFIGPKADTIRLMGDKVSAKDAMIKSGVPTVPGSDG 139

Query: 112 LVNRFTMDS---QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGD 164
            +      +      +  P +IK   GG   G+ V+ K++ +         ++ +     
Sbjct: 140 PLPEDEEVALAIARDVGYPVIIKAAGGGGGRGMRVVHKEEDLIASAKLTRTEAGAAFGNP 199

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+++     +   V+ D   +               L+          PA  I   
Sbjct: 200 MVYLEKFLTNPRHVEVQVLSDGQGNAI-----HLGDRDCSLQRRHQKVLEEAPAPGIDEK 254

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +EV +    A   IG RG    +FL+   + + +++E+N 
Sbjct: 255 ARQEVFKRCVDACIEIGYRGAGTFEFLY--ENGRFYFIEMNT 294


>gi|294787841|ref|ZP_06753085.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Simonsiella
           muelleri ATCC 29453]
 gi|294484134|gb|EFG31817.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Simonsiella
           muelleri ATCC 29453]
          Length = 456

 Score = 72.5 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 36/222 (16%), Positives = 80/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---S 110
            +H  +G   E+      +E     +         L  DK+ +K+ + + GVP  P    
Sbjct: 77  AIHPGYGFLAENANFAEQVEQSGFIFIGPKADTIRLMGDKVSAKKAMIASGVPCVPGSDG 136

Query: 111 ILVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
            L +     +     +  P ++K   GG   G+ V++K + +   +     ++ +     
Sbjct: 137 ALPDDSDEILKIAEKVGFPVIVKASGGGGGRGMRVVEKKEDLIQSVEMTKAEAQAAFGNP 196

Query: 165 QLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+++     +   ++ D   +   +            K          PA  I  +
Sbjct: 197 MVYMERFLQRPRHIEIQILADEHGNAIYLGERDCSMQRRHQK-----IIEEAPAPFITPE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              ++      A + IG RG    +FL+     + F++E+N 
Sbjct: 252 ERAKIGMACAEACKRIGYRGAGTFEFLY--EDGEFFFIEMNT 291


>gi|257057682|ref|YP_003135514.1| biotin carboxylase [Saccharomonospora viridis DSM 43017]
 gi|256587554|gb|ACU98687.1| biotin carboxylase [Saccharomonospora viridis DSM 43017]
          Length = 405

 Score = 72.5 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 33/177 (18%), Positives = 75/177 (42%), Gaps = 10/177 (5%)

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVIKKD 147
           S+DK   + V    GVP   S+  +      ++   +  P ++KP+    S G++     
Sbjct: 97  SVDKPVFRSVCERAGVPTYRSVSGSSGEELVEAARHLRFPALVKPVDSSGSRGVVSCADP 156

Query: 148 QSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV-TEIAVPKSDFYSYELKY 206
             +   + +S +++H  ++++E+++DG  LT       +L V  EI        +     
Sbjct: 157 GKLRSAVAESLTFSHRGRVVVEEHLDGRHLTI-----EALVVDGEIVFHAVTERTITPPP 211

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEI 262
             + + H++P ++P ++   +  +       +G R G    D        K++ +E+
Sbjct: 212 LFVTTAHLMPVELPAEVAAALPDMLAAVCAELGYRTGPLTFDA-VLGRDGKLYLIEM 267


>gi|237786109|ref|YP_002906814.1| acyl-CoA carboxylase subunit alpha [Corynebacterium kroppenstedtii
           DSM 44385]
 gi|237759021|gb|ACR18271.1| acyl-CoA carboxylase, alpha subunit [Corynebacterium kroppenstedtii
           DSM 44385]
          Length = 597

 Score = 72.5 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 34/222 (15%), Positives = 73/222 (32%), Gaps = 19/222 (8%)

Query: 56  NVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
           N +H  +G   E+G     +E   + +      +     DK+ ++ +  +   P+ P   
Sbjct: 87  NAIHPGYGFLSENGDFAEAVENAGLIWIGPSPDSIRKLGDKVTARHIALAANAPMAPGTK 146

Query: 113 VNRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQS----IPLDLLQSSSWNHGD 164
                 D           P  IK   GG   G+ V              + +S +     
Sbjct: 147 EPVKDADEVVEFAKEHGLPIAIKAAFGGGGRGMKVAHSLDEVRDLYDSAVRESMAAFGRS 206

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
           +  +E+Y+D    + C V+ D   +   ++          L+          PA  +  +
Sbjct: 207 ECFVERYLDKARHVECQVVADMHGNYVVVST-----RDCSLQRRFQKLVEEAPAPFLTDE 261

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             + + + A    +  G  G    +++       + +LE+N 
Sbjct: 262 QNERLHQSAKDICREAGYYGAGTVEYMV-ADDGLISFLEVNT 302


>gi|150391900|ref|YP_001321949.1| carbamoyl phosphate synthase large subunit [Alkaliphilus
           metalliredigens QYMF]
 gi|149951762|gb|ABR50290.1| carbamoyl-phosphate synthase, large subunit [Alkaliphilus
           metalliredigens QYMF]
          Length = 1070

 Score = 72.5 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 27/201 (13%), Positives = 75/201 (37%), Gaps = 9/201 (4%)

Query: 67  LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQHLI 124
            +      + IP   +      ++ D+ + + ++    +       V      +     +
Sbjct: 644 KLAKFFREMNIPILGTQPEQIDVAEDREKFEALMEELNIDRPKGKAVWSLEEGLVVAETL 703

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
             P +++P       G+ +  +++ +   L  S   +    +LI++Y+ G E+    + D
Sbjct: 704 GYPVLVRPSYVLGGQGMEITYEEKELIRYLGDSFERDKKTPVLIDRYLIGTEIEVDALCD 763

Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGI 243
                 EI +P    +       S +S  + P+  +  +I +++         A+  +G+
Sbjct: 764 GE----EILIPGIMEHLERAGIHSGDSISMYPSQNVSEEIKEKIIDYTKRIALALRVQGM 819

Query: 244 SRSDFLFDPLSRKVFWLEINV 264
               F+      +++ +E+N 
Sbjct: 820 INIQFI--EYENELYIIEVNP 838



 Score = 58.2 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 47/287 (16%), Positives = 98/287 (34%), Gaps = 35/287 (12%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFN---------- 56
           G ++E + +   G     AL++ G +V  ++ + +  +    +  D  +           
Sbjct: 21  GQAAEFDYA---GTQACQALKEEGVEVVLVNSNPATIMTDREM-ADKIYIEPLKVEIIEK 76

Query: 57  ---------VLHGNFGEDG-------LVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
                    ++ G  G+ G         Q IL    +    + I +     D+   K ++
Sbjct: 77  IIEKERPDSLIAGMGGQTGLNLAVELHDQGILNKYGVRVIGTSIESIKKGEDRELFKNLM 136

Query: 101 SSCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS 158
                P   S ++ +    +     I  P +++P       G  +    +++   L    
Sbjct: 137 EKIQQPSIESEIITKLEDGLSFAEEIGYPVIVRPAYTLGGAGGGIADDPEALKTILTAGL 196

Query: 159 SWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
             +   Q+L+E+ + G  E+   VM D S +   I V   +       ++  +       
Sbjct: 197 HLSPVGQVLLERSIKGWKEIEYEVMRDGSGN--CITVCNMENIDPVGVHTGDSIVVAPSQ 254

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +    Y+ ++  +     AIG  G     F  DP S     +EIN 
Sbjct: 255 TLSDKEYQMLRSASIDIINAIGIEGGCNVQFALDPHSFAYVVIEINP 301


>gi|283788102|ref|YP_003367967.1| biotin carboxylase (acetyl-CoA carboxylase subunit A) [Citrobacter
           rodentium ICC168]
 gi|282951556|emb|CBG91255.1| biotin carboxylase (acetyl-CoA carboxylase subunit A) [Citrobacter
           rodentium ICC168]
          Length = 449

 Score = 72.5 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 42/222 (18%), Positives = 81/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         L  DK+ +   +   GVP  P    
Sbjct: 77  AIHPGYGFLSENANFAEQVERSGFIFIGPKADTIRLMGDKVSAITAMKKAGVPTVPGSDG 136

Query: 112 -LVNRFTMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
            L +    +  H   I  P +IK   GG   G+ V++ D  +   +     ++ +    D
Sbjct: 137 PLTDDMDANRAHAKRIGYPVIIKASGGGGGRGMRVVRSDAELAQSISMTKAEAKAAFSND 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+Y++    +   V+ D   +   +A           K          PA  I  +
Sbjct: 197 MVYMEKYLENPRHIEIQVLADGQGNAIYLAERDCSMQRRHQK-----VVEEAPAPGITPE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + + +      A   IG RG    +FLF   + + +++E+N 
Sbjct: 252 LRRYIGERCAKACVDIGYRGAGTFEFLF--ENGEFYFIEMNT 291


>gi|328849180|gb|EGF98365.1| hypothetical protein MELLADRAFT_46050 [Melampsora larici-populina
           98AG31]
 gi|328857953|gb|EGG07067.1| hypothetical protein MELLADRAFT_43264 [Melampsora larici-populina
           98AG31]
          Length = 1204

 Score = 72.5 bits (177), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 37/216 (17%), Positives = 81/216 (37%), Gaps = 16/216 (7%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
           +G   E+      +E   + +            DK++++ +   CGVPV P       + 
Sbjct: 133 YGFLAENAEFAKKVEEAGLAFIGPQPEVIDGLGDKVKARTLAMKCGVPVVPGTEGAIASY 192

Query: 119 DSQHLI----SPPYVIKPLKGGSSLGIIVIKKDQS----IPLDLLQSSSWNHGDQLLIEQ 170
           D           P +IK   GG   G+ V++  +         + ++ +      + IE+
Sbjct: 193 DLADAFIKEHGFPVIIKAAMGGGGRGMRVVRAAEEFKESFERAVSEAKAAFGDGTVFIER 252

Query: 171 YVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQ 228
           ++D    +   ++GD++ +V              ++        + PA ++  ++  ++ 
Sbjct: 253 FLDKPRHIEVQLLGDSAGNVI-----HLFERDCSVQRRHQKVVELAPASELTDEVRSKIL 307

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             A     A+  R    ++FL D   R   ++EIN 
Sbjct: 308 EDAKKLASAVNYRNAGTAEFLVDQQGRH-HFIEINP 342


>gi|324991001|gb|EGC22935.1| carbamoyl-phosphate synthase, large subunit [Streptococcus
           sanguinis SK353]
          Length = 1059

 Score = 72.5 bits (177), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 23/224 (10%), Positives = 72/224 (32%), Gaps = 11/224 (4%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYV 129
           L    +    + +     + D+   +Q +    +P  P           ++   I  P +
Sbjct: 646 LSKAGVKILGTQVAGLDRAEDRDLFEQALKELDIPQPPGQTATNEEEAVEAARKIGFPVL 705

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           ++P        + +++ +  +   +  +   +    +L++ Y+ G E     + D    +
Sbjct: 706 VRPSYVLGGRAMEIVENEADLRSYMRTAVKASPDHPVLVDSYIVGDECEVDAISDGCQVL 765

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
               +   +       +S  +     P  +   +   +          + C G+    F+
Sbjct: 766 IPGIMEHIERAGV---HSGDSMAAYPPQTLSQKVKDTIADYTKRLALGLNCIGMMNIQFV 822

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
                 +V+ +E+N +   T     P ++        ++   ++
Sbjct: 823 I--KDEQVYVIEVNPRASRT----VPFLSKVTDIPMAQVATRLI 860



 Score = 65.9 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 37/206 (17%), Positives = 78/206 (37%), Gaps = 9/206 (4%)

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147
           + D+   KQ++   G P+  S +VN     ++    I  P +++P       G  +   +
Sbjct: 126 AEDRDLFKQLMEELGQPIPESEIVNTVDEALEFAAGIGYPVIVRPAFTLGGTGGGICSNE 185

Query: 148 QSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
           + +          +   Q LIE+ + G  E+   VM D + +   + V   + +     +
Sbjct: 186 EELQEIAENGLKLSPVTQCLIERSIAGFKEIEYEVMRDGADNA--LVVCNMENFDPVGIH 243

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
           +  +        I    Y+ ++  +    +A+   G        DP S K + +E+N  P
Sbjct: 244 TGDSIVFAPSQTISDYEYQMLRDASLKIIRALKIEGGCNVQLALDPHSFKYYVIEVN--P 301

Query: 267 GMTPVSIFPEMAAYAGYSFRELLLWM 292
            ++  S     +   GY   +L   +
Sbjct: 302 RVSRSS--ALASKATGYPIAKLAAKI 325


>gi|227488281|ref|ZP_03918597.1| phosphoribosylglycinamide synthetase [Corynebacterium
           glucuronolyticum ATCC 51867]
 gi|227091851|gb|EEI27163.1| phosphoribosylglycinamide synthetase [Corynebacterium
           glucuronolyticum ATCC 51867]
          Length = 393

 Score = 72.5 bits (177), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 38/171 (22%), Positives = 76/171 (44%), Gaps = 13/171 (7%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN-RFTMDSQHLISPPYVI 130
            E L++P        + L  DK    Q    C V      L+     +DS  + S P V 
Sbjct: 85  CEALQLPSI--SYRTARLCTDKFLMIQEFQRCDVAAPWFRLIQAEEDIDSISIPSYPCVT 142

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM---GDASL 187
           KP+    S G+ V++  + +   +  SS  +    +L+E+++DG E++  ++   G A +
Sbjct: 143 KPVDSSGSRGVQVVENFEQLKNAIDYSSKQSRLGMVLVEEFLDGPEVSVEMLVIDGHAHV 202

Query: 188 DVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
            V    V            + + S H  P+++  +I +++++L+  A +A+
Sbjct: 203 LVITDKVTSGPP-------NFVESAHFQPSQLEPEIKEKIEQLSKQAVEAL 246


>gi|212695979|ref|ZP_03304107.1| hypothetical protein ANHYDRO_00512 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212677102|gb|EEB36709.1| hypothetical protein ANHYDRO_00512 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 400

 Score = 72.5 bits (177), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 34/190 (17%), Positives = 71/190 (37%), Gaps = 19/190 (10%)

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTMDSQHLISPPYVIKPLKGGS 137
                 A+ +  DK + K+      V      +V   +   ++   +  P ++K      
Sbjct: 94  VGLNEEAAIMCGDKYKMKEAFKKHNVNTASHFVVKNEKELKNALDDLQLPVIVKATDLQG 153

Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDVTEIAVP 195
           S GI + K  +       Q+ +    D  ++E++++G E      V  +  L V    +P
Sbjct: 154 SKGIYIAKNGEEAINGFKQTMNLTKRDYCIVEEFIEGYEFGAQAFVYENEVLFV----MP 209

Query: 196 KSDFYSYELKYSSLNST---HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS-RSDFLFD 251
             D       Y S  +    H +P  +  D+ K+ +     A +A+G    +   D +  
Sbjct: 210 HGD-----ETYMSHTAVPIGHYVPLDVKDDVIKKTKIEVKKAIKALGLNNCAVNVDMIL- 263

Query: 252 PLSRKVFWLE 261
             + +V+ +E
Sbjct: 264 -KNDEVYIIE 272


>gi|116618307|ref|YP_818678.1| carbamoyl-phosphate synthase large subunit [Leuconostoc
           mesenteroides subsp. mesenteroides ATCC 8293]
 gi|122271493|sp|Q03WW7|CARB_LEUMM RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|116097154|gb|ABJ62305.1| carbamoyl-phosphate synthase large subunit [Leuconostoc
           mesenteroides subsp. mesenteroides ATCC 8293]
          Length = 1059

 Score = 72.5 bits (177), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 48/286 (16%), Positives = 104/286 (36%), Gaps = 33/286 (11%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQIDVDRS---------------------VGLV 45
           G ++E + S   G   A +L++ G+ V  ++ + +                     +  +
Sbjct: 21  GQAAEFDYS---GTQAALSLKEEGYHVILVNSNPATIMTDAEIADKVYIEPLSIDFIERI 77

Query: 46  LAHLKPDLAFNVLHGNFG----EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           L   +PD     L G  G    +D     IL+ L I    + + A   + D+   K ++ 
Sbjct: 78  LRKERPDAILPTLGGQTGLNMAKDLSEAGILDELNIELLGTKLSAIEEAEDREEFKALME 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
               P+  SI+      +++       P +++P       G  + +  + +         
Sbjct: 138 RLNEPIPESIIATTLEESLNFADTHGYPVIVRPAYTLGGTGGGIAQTHEELSEITANGLE 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   Q+LIE+ + G  E+   VM DA+ +   + V   + +     ++  +        
Sbjct: 198 LSPVTQVLIERSIAGYKEIEFEVMRDANDNA--LVVASMENFDPVGIHTGDSIVTAPVQT 255

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +     + ++  A    +A+   G        DP S K + +E+N 
Sbjct: 256 LSDREVQMMRDAALKIIRALKIEGGVNIQMALDPDSYKYYIIEVNP 301



 Score = 64.4 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/199 (14%), Positives = 70/199 (35%), Gaps = 10/199 (5%)

Query: 69  QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISP 126
           Q +L+   +    + +     + D+    QV+    +P             + +   I  
Sbjct: 644 QPLLDN-GVNILGTSVEDLNRAEDREAFDQVIKELALPQPVGKTATTVDCALAAAQSIGY 702

Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186
           P +I+P        + ++  D  +   + ++   ++   +LI+ Y+ G E    V+ D  
Sbjct: 703 PVLIRPSYVLGGRAMEIVSSDDELQDYMQRAVKVSNDHPVLIDSYLVGQEAEVDVLSDGE 762

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISR 245
             V    +   +           +S  V P + +   +  E+ + +    +A+   G+  
Sbjct: 763 TAVIPGIMEHIERAGVHS----GDSMSVYPPQYLSQKVQDEMVQASINLAKAMNTIGLMN 818

Query: 246 SDFLFDPLSRKVFWLEINV 264
             F+        + +E+N 
Sbjct: 819 VQFVIHE--NTAYVIEVNP 835


>gi|300691214|ref|YP_003752209.1| carbamoyl-phosphate synthase large chain (carbamoyl-phosphate
           synthetase ammonia chain) [Ralstonia solanacearum PSI07]
 gi|299078274|emb|CBJ50922.1| Carbamoyl-phosphate synthase large chain (Carbamoyl-phosphate
           synthetase ammonia chain) [Ralstonia solanacearum PSI07]
          Length = 1081

 Score = 72.5 bits (177), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 31/222 (13%), Positives = 82/222 (36%), Gaps = 12/222 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQHLISPPYV 129
           LE   +P   +       + D+ R ++++   G+   P+         +     I  P V
Sbjct: 658 LEANGVPIIGTTPDMIDAAEDRERFQKLLQDLGLRQPPNRTARAEDEALKLADEIGYPLV 717

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++ + + +   + ++   ++   +L+++++ D IE     + D    
Sbjct: 718 VRPSYVLGGRAMEIVHEPRDLERYMREAVKVSNDSPVLLDRFLNDAIECDVDALSDGKRV 777

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                +   +       +S  ++  + P  +      E++R      +A+   G+    F
Sbjct: 778 FIGGVMEHIEQAGV---HSGDSACSLPPYSLSQATVDELKRQTAAMARALNVVGLMNVQF 834

Query: 249 LFDPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
                  +  V+ LE+N +   T     P ++   G S  ++
Sbjct: 835 AIQQKGGEDIVYVLEVNPRASRT----VPYVSKATGISLAKV 872



 Score = 60.1 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 49/285 (17%), Positives = 95/285 (33%), Gaps = 42/285 (14%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + GFKV  +              DV          V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGFKVVLVNSNPATIMTDPSTADVTYIEPITWEVVERIIAKERPDAILP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G    +  +      +L+   +    +   A   + D+ + K  ++  G+    S  
Sbjct: 89  TMGGQTALNCALDLHRHGVLKKYNVELIGASPEAIDKAEDRQKFKDAMTKIGLGSAKSGI 148

Query: 111 -------ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
                  + V             P VI+P       G  +    +       +    +  
Sbjct: 149 AHSLEEALAVQSQIARETGTSGYPIVIRPSFTLGGTGGGIAYNREEFEDICKRGLDLSPT 208

Query: 164 DQLLIEQYVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IP 220
           ++LLIE+ + G  E    V+ D   + +   ++   D           +S  V PA+ + 
Sbjct: 209 NELLIEESLLGWKEYEMEVVRDKKDNCIIVCSIENLDPMGIHT----GDSITVAPAQTLT 264

Query: 221 LDIYKEVQRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
              Y+ ++  +    + IG   G S   F  +P   ++  +E+N 
Sbjct: 265 DKEYQILRNASLAVLREIGVDTGGSNVQFSINPQDGRMIVIEMNP 309


>gi|114650510|ref|XP_001148442.1| PREDICTED: propionyl-Coenzyme A carboxylase, alpha polypeptide
           isoform 4 [Pan troglodytes]
          Length = 744

 Score = 72.5 bits (177), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 75/220 (34%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      L   ++ +      A     DK+ SK +     V   P    
Sbjct: 138 AVHPGYGFLSENKEFARCLAAEDVVFIGPDTHAIQAMGDKIESKLLAKKAEVNTIPGFDG 197

Query: 112 LVNRFTMDS--QHLISPPYVIKPLKGGSSLGIIVIKKDQS----IPLDLLQSSSWNHGDQ 165
           +V            I  P +IK   GG   G+ +   D+       L   +++S    D+
Sbjct: 198 VVKDAEEAVRIAREIGYPVMIKASAGGGGKGMRIAWDDEETRDGFRLSSQEAASSFGDDR 257

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           LLIE+++D    +   V+GD   +   +   +        K             +  +  
Sbjct: 258 LLIEKFIDNPRHIEIQVLGDKHGNALWLNERECSIQRRNQK----VVEEAPSIFLDAETR 313

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +   A    +A+        +FL D      ++LE+N 
Sbjct: 314 RAMGEQAVALARAVKYSSAGTVEFLVDSKKN-FYFLEMNT 352


>gi|114650518|ref|XP_001148157.1| PREDICTED: propionyl-CoA carboxylase alpha chain, mitochondrial
           isoform 3 [Pan troglodytes]
          Length = 681

 Score = 72.5 bits (177), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 75/220 (34%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      L   ++ +      A     DK+ SK +     V   P    
Sbjct: 138 AVHPGYGFLSENKEFARCLAAEDVVFIGPDTHAIQAMGDKIESKLLAKKAEVNTIPGFDG 197

Query: 112 LVNRFTMDS--QHLISPPYVIKPLKGGSSLGIIVIKKDQS----IPLDLLQSSSWNHGDQ 165
           +V            I  P +IK   GG   G+ +   D+       L   +++S    D+
Sbjct: 198 VVKDAEEAVRIAREIGYPVMIKASAGGGGKGMRIAWDDEETRDGFRLSSQEAASSFGDDR 257

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           LLIE+++D    +   V+GD   +   +   +        K             +  +  
Sbjct: 258 LLIEKFIDNPRHIEIQVLGDKHGNALWLNERECSIQRRNQK----VVEEAPSIFLDAETR 313

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +   A    +A+        +FL D      ++LE+N 
Sbjct: 314 RAMGEQAVALARAVKYSSAGTVEFLVDSKKN-FYFLEMNT 352


>gi|313672969|ref|YP_004051080.1| carbamoyl-phosphate synthase large subunit [Calditerrivibrio
           nitroreducens DSM 19672]
 gi|312939725|gb|ADR18917.1| carbamoyl-phosphate synthase large subunit [Calditerrivibrio
           nitroreducens DSM 19672]
          Length = 1077

 Score = 72.5 bits (177), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 53/278 (19%), Positives = 97/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVDRSVGL------------VLAHLKPDLAFN 56
           SG     AL++ G+KV  I         D + +               ++   +PD    
Sbjct: 29  SGTQALKALKEEGYKVVLINSNPATIMTDPEFADATYIEPLTVECAEKIIEKERPDAILP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      +L+   +    + + A   + D+   K  +   G+ +  S  
Sbjct: 89  TVGGQTALNLALDLHKHGVLDRYNVELIGAKVDAIKKAEDRELFKAAMYKIGLEMPKSAY 148

Query: 113 VNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           V  F   MD+   I  P +I+P       G  V    +     L      +   ++L+E+
Sbjct: 149 VKSFEEGMDAIVNIGFPAIIRPSFTLGGTGGNVAYNMEEYKRYLEWGLEASPVGEVLVEE 208

Query: 171 YVDG-IELTCGVMGD-ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            + G  E    VM D     V   ++   D           +S  V PA+ +    Y+ +
Sbjct: 209 SILGWKEYELEVMRDLKDNVVIICSIENFDPMGVHT----GDSITVAPAQTLTDKEYQYM 264

Query: 228 QRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
           +  A    + IG   G S   F  DP + +   +E+N 
Sbjct: 265 RDAAIKIMREIGVDTGGSNVQFATDPKTGRQVVIEMNP 302



 Score = 57.4 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/196 (15%), Positives = 72/196 (36%), Gaps = 8/196 (4%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           LE   +    +   +  ++ D+ R K++V   G+    + +             I  P V
Sbjct: 655 LEKAGVRILGTSPDSIDIAEDRERFKKLVEKLGILQPNNGIARNPEEAFKIAEEIGYPVV 714

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLD 188
           ++P        + ++   +++   +  +   +    +LI++++D  IEL    + D    
Sbjct: 715 VRPSYVLGGRAMEIVYDSEALANYMKFAVEASEKHPVLIDKFLDNAIELDVDAISDGETV 774

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           V    +   +       +S  ++  + P  I  DI  +V ++       +   G+    F
Sbjct: 775 VVAGIMQHIEEAGI---HSGDSACSIPPRTISEDIKIKVIKITKQLAYELKVLGLMNIQF 831

Query: 249 LFDPLSRKVFWLEINV 264
                   ++ LE+N 
Sbjct: 832 AI--KDNDIYILEVNP 845


>gi|296011192|gb|ADG65259.1| pyruvate carboxylase [Rhizopus oryzae]
          Length = 1179

 Score = 72.5 bits (177), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 85/221 (38%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
           ++H  +G   E+      +E   I +    +       DK +++ +   C VPV P    
Sbjct: 102 MIHPGYGFLSENAEFARKVEAAGITFIGPSLDVIESLGDKTKARTIAMKCEVPVVPGTPG 161

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGDQ 165
            +   +  ++       P +IK   GG   G+ V++ + S+         ++ +      
Sbjct: 162 PVSEYKEALNFIKEYGFPIIIKAAMGGGGRGMRVVRDEASLEDAFTRAKSEALAAFGDGT 221

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDI 223
           + IE+++D    +   ++ D + +V              ++        + PA  +   +
Sbjct: 222 VFIERFLDKPRHIEVQLLADRAGNVV-----HLFERDCSVQRRHQKVVEIAPAKNLDNKV 276

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +   A    +A+  +    ++FL D  +R  +++EIN 
Sbjct: 277 REAILNDAIKIAKAVKYKNAGTAEFLVDNQNRH-YFIEINP 316


>gi|225387905|ref|ZP_03757669.1| hypothetical protein CLOSTASPAR_01675 [Clostridium asparagiforme
           DSM 15981]
 gi|225045990|gb|EEG56236.1| hypothetical protein CLOSTASPAR_01675 [Clostridium asparagiforme
           DSM 15981]
          Length = 839

 Score = 72.5 bits (177), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 37/225 (16%), Positives = 81/225 (36%), Gaps = 13/225 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTMDSQHLISPPYV 129
           L  + +P   +       + D+ R   ++  C +P      V        + + +  P +
Sbjct: 419 LMKMGVPILGTAAEDVDAAEDRERFDAILEQCDIPRPAGHTVFTAEEAKKAANDLGYPVL 478

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           ++P       G+ +   D+ I   +   +       +L+++Y+ G E+    + D     
Sbjct: 479 VRPSYVLGGQGMQIAICDEDIDEFIGIINQIAQEHPILVDKYIMGKEIEVDAICDG---- 534

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           T+I +P    +       S +S  V PA  I       +        +A+  +G+    F
Sbjct: 535 TDILIPGIMQHIERTGIHSGDSISVYPAQDITQKNVDTLVEYTEKLARALHVKGMINIQF 594

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           + D     V+ +E+N +   T     P ++   G     L   ++
Sbjct: 595 IVD--GDDVYIIEVNPRSSRT----VPYISKVTGIPIVPLATQII 633


>gi|119500988|ref|XP_001267251.1| pyruvate carboxylase, putative [Neosartorya fischeri NRRL 181]
 gi|119415416|gb|EAW25354.1| pyruvate carboxylase, putative [Neosartorya fischeri NRRL 181]
          Length = 1193

 Score = 72.5 bits (177), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 85/221 (38%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
           ++H  +G   E+      +E   I +            DK+ ++Q+   CGVPV P    
Sbjct: 120 LIHPGYGFLSENAEFARKVEKAGIVFVGPTPETIEALGDKVSARQLAIKCGVPVVPGTPG 179

Query: 112 LVNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
            V R+            P +IK   GG   G+ V++    +     +++S          
Sbjct: 180 PVERYEEVKAFTDTYGFPIIIKAAFGGGGRGMRVVRDQADLRDAFERATSEARSAFGNGT 239

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDI 223
           + +E+++D    +   ++GD   +V              ++        + PA  +P D+
Sbjct: 240 VFVERFLDRPKHIEVQLLGDNHGNVI-----HLFERDCSVQRRHQKVVEIAPAKDLPNDV 294

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              +   A    +++  R    ++FL D  +R  +++EIN 
Sbjct: 295 RDRILADAVKLAKSVNYRNAGTAEFLVDQQNR-YYFIEINP 334


>gi|89092353|ref|ZP_01165307.1| methylcrotonyl-CoA carboxylase, alpha subunit [Oceanospirillum sp.
           MED92]
 gi|89083441|gb|EAR62659.1| methylcrotonyl-CoA carboxylase, alpha subunit [Oceanospirillum sp.
           MED92]
          Length = 664

 Score = 72.5 bits (177), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 41/221 (18%), Positives = 78/221 (35%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      LE   I +      A A    K  +K+++S   VP+ P    
Sbjct: 77  AVHPGYGFLSENTEFAEALEANGITFIGPPSSAIAAMGSKSAAKEIMSHANVPLVPGYHG 136

Query: 114 NRFT----MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
                            P ++K + GG   G+ V++  +     L+ +            
Sbjct: 137 EDQDPALLKAESEKCGYPQLLKAVAGGGGKGMRVVESLEEFDEALVSACREAQNAFGNPD 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           +LIE+Y+     +   V  D   +   +A          ++          PA  +  ++
Sbjct: 197 MLIERYLTQPRHVEIQVFCDKHGNGIYLAE-----RDCSVQRRHQKVIEEAPAPGLSDEV 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              +   A  A QAI   G    +FL+D +    +++E+N 
Sbjct: 252 RVAMGEAAVRAAQAIDYVGAGTVEFLYD-VDGSFYFMEMNT 291


>gi|328951022|ref|YP_004368357.1| carbamoyl-phosphate synthase, large subunit [Marinithermus
           hydrothermalis DSM 14884]
 gi|328451346|gb|AEB12247.1| carbamoyl-phosphate synthase, large subunit [Marinithermus
           hydrothermalis DSM 14884]
          Length = 1030

 Score = 72.5 bits (177), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 43/265 (16%), Positives = 97/265 (36%), Gaps = 32/265 (12%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVL-HGNFGEDGLVQAI--- 71
           AL++AGF+   +         D D +  L    L  +   N++ H      G++ ++   
Sbjct: 587 ALQEAGFETIMVNSNPETVSTDYDTADRLYFEPLTFEDVLNLVEHETP--VGVILSLGGQ 644

Query: 72  --------LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--FTMDSQ 121
                   L    +P   +   A   + ++    ++  S G+P     +        +  
Sbjct: 645 TPLKLAKRLAEAGVPILGTPPEAIHTAEEREAFNRLTQSLGIPQPKGAVARDPLHAQELA 704

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS-SWNHGDQLLIEQYVDGI-ELTC 179
             +  P +++P        + V++  + +   L +   +      +L++QY++G  EL  
Sbjct: 705 ETLGYPLMVRPSYVLGGRAMQVVRTPEELRRYLAEVYGALAEKPSILLDQYLEGALELDV 764

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
             + D    V    +   +       +S  ++T + P  +   + + V+       QA+G
Sbjct: 765 DAIADGERVVVAGIMEHVERAGV---HSGDSATLLPPTSLTPQLLETVKDYTRRLAQALG 821

Query: 240 CRGISRSDFLFDPLSRKVFWLEINV 264
            RG+   +  +      V+ LE N 
Sbjct: 822 VRGL--LNVQYAVKDDTVYVLEANP 844



 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 53/289 (18%), Positives = 99/289 (34%), Gaps = 38/289 (13%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI---------DVD------------RSVGLV 45
           G ++E + S   G     AL +AG++V  +         D +              +  +
Sbjct: 21  GQAAEFDYS---GTQAVKALRNAGYQVVLVNSNPATIMTDPELAEATYIEPLTPEFIERI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +A  +PD     L G    +         +LE   +    +   A     D+   +  + 
Sbjct: 78  IAKERPDALLPTLGGQTALNLATALWEAGVLERYGVELIGANHEAIKKGEDREAFQAAMR 137

Query: 102 SCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             GV V    +V+     +     +  P V++P       G      ++     L     
Sbjct: 138 KIGVEVPRGKMVHSLEEGLAFAREVGYPVVVRPSFTLGGTGGGFAHSEEEFIRVLTAGLQ 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPA 217
            +     L+E+ + G  E    VM D +  V  I   ++ D           +S  V PA
Sbjct: 198 QSPVHTALVEESILGWKEYELEVMRDHADTVVIITSIENLDPMGVHT----GDSITVAPA 253

Query: 218 K-IPLDIYKEVQRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
           + +    Y+ ++  A    + IG   G S   F  DP + ++  +E+N 
Sbjct: 254 QTLTDVEYQRMRDAARAIIREIGVDTGGSNIQFAVDPKTGRMVVIEMNP 302


>gi|269836409|ref|YP_003318637.1| acetyl-CoA carboxylase, biotin carboxylase [Sphaerobacter
           thermophilus DSM 20745]
 gi|269785672|gb|ACZ37815.1| acetyl-CoA carboxylase, biotin carboxylase [Sphaerobacter
           thermophilus DSM 20745]
          Length = 457

 Score = 72.5 bits (177), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 37/219 (16%), Positives = 81/219 (36%), Gaps = 17/219 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            LH  +G   E   +  I     + +        A   +K  ++ ++   G+P+ P +  
Sbjct: 77  ALHPGYGFLAESPSLAEICRECNLTFIGPSPDVIAQMGNKATARAMMRKAGLPIIPGVEE 136

Query: 114 NRFT----MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGDQ 165
                    +    I  P +IK + GG   G+ + + ++ +    P+   ++ +      
Sbjct: 137 PVHDTTAAREVAKRIGYPVLIKAVAGGGGRGMRIAQDERELIRVFPVAQSEAQAAFGNGA 196

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+Y++    +   V+ D    V  +        S + +Y  L         +   + 
Sbjct: 197 VYIERYLEEPRHVEVQVLADHHGHVVALGERD---CSLQRRYQKL-VEESPAPNLSNKVR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
           + + + A  A +AIG       +FL D    + ++ E N
Sbjct: 253 ENLAKAAVKAAKAIGYTNAGTFEFLVDK-DGRFYFTEAN 290


>gi|325681229|ref|ZP_08160759.1| carbamoyl-phosphate synthase, large subunit [Ruminococcus albus 8]
 gi|324107151|gb|EGC01437.1| carbamoyl-phosphate synthase, large subunit [Ruminococcus albus 8]
          Length = 1074

 Score = 72.5 bits (177), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 47/277 (16%), Positives = 97/277 (35%), Gaps = 34/277 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+++  +         D D              +  ++   +PD    
Sbjct: 29  SGTQACKALRNLGYEIVLVNSNPATIMTDPDVADITYIEPLNLDRLTQIIDKERPDALLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G  G +   +     +L+   +      + A     D++  K  +   G+ +  S +
Sbjct: 89  NLGGQSGLNLCSELDKAGVLKKYGVQVIGVQVDAIERGEDRIEFKNAMKELGIGMPKSQV 148

Query: 113 VNRFTMDS--QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                        +  P V++P       G  ++     + +   +    +   Q+L+E+
Sbjct: 149 AYSVDEAVKIAEELKYPVVLRPAYTMGGAGGGMVYNVDELKVVCARGLQASLVGQVLVEE 208

Query: 171 YVDG-IELTCGVMGD-ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEV 227
            + G  EL   V+ D  +  +T   +   D           +S    P   IP D+ KE+
Sbjct: 209 CIFGWEELELEVVRDAKNNKITVCFIENIDPIGVHT----GDSFCSAPMLTIPEDVQKEL 264

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           Q +++   ++I   G     F  +P   ++  +EIN 
Sbjct: 265 QEMSYRIIESIEVIGGCNCQFARNPEDGRIVVIEINP 301



 Score = 60.5 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 25/197 (12%), Positives = 71/197 (36%), Gaps = 10/197 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-SILVN-RFTMDSQHLISPPYV 129
           L+   +    +      L+ D+   + ++   G+P+    + VN    +   + I  P +
Sbjct: 648 LKKYGVNILGTTPETIDLAEDRDHFRAMMDKLGIPMPEAGMAVNVDEALAIANKIGYPVM 707

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLD 188
           ++P       G+ ++  D+ + + +  +        +LI+++++   E     + D    
Sbjct: 708 VRPSYVLGGRGMEIVHDDEMMKVYMSAAVGVTPDRPILIDRFLNHATECEADAISDGEHC 767

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
                +   +           +S  +LP+  +  +I   ++         +  +G+   +
Sbjct: 768 FVPAVMEHIELAGVHS----GDSACILPSKNLSPEIVATIKEYTKKIAVEMNVKGL--MN 821

Query: 248 FLFDPLSRKVFWLEINV 264
             +      V+ LE N 
Sbjct: 822 MQYAIEGDTVYVLEANP 838


>gi|56609589|gb|AAW03322.1| hypothetical protein [Cystobacter fuscus]
          Length = 1075

 Score = 72.5 bits (177), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 52/289 (17%), Positives = 100/289 (34%), Gaps = 38/289 (13%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI---------DVD------------RSVGLV 45
           G +SE + S   G     AL + G +V  +         D +                 +
Sbjct: 21  GQASEFDYS---GTQAIKALREEGVEVVLLNSNPATVMTDPEFAHRTYIEPITVEVAERI 77

Query: 46  LAHLKPDLAFNVLHGNFGED----GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           LA  +PD     + G    +       Q IL+   +    + + A   + D+   K  + 
Sbjct: 78  LAQERPDSVLPTMGGQTALNLAKALAEQGILDKYGVRLIGASLEAINKAEDRQLFKAAMQ 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             GV +  S   +  +  +     I  P +I+P       G  +    +           
Sbjct: 138 KIGVALPRSGYASNMQEALALIDDIGFPTIIRPSFTLGGTGGGIAYNREEFEAICRSGLK 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPA 217
            +    +L+E+ V G  E    V+ D++ +V  I   ++ D           +S  V PA
Sbjct: 198 ASPNSTILVEESVLGWKEYELEVVRDSADNVIIICSIENLDPMGVHT----GDSITVAPA 253

Query: 218 K-IPLDIYKEVQRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
           + +    Y+ ++  +    + IG   G S   F  +P   ++  +E+N 
Sbjct: 254 QTLTDREYQRLREASLRIIREIGVDTGGSNIQFGVNPADGRIVVIEMNP 302



 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 36/228 (15%), Positives = 82/228 (35%), Gaps = 27/228 (11%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYV 129
           LE   +P   +   A   + D+ R  Q++   G+    + +             I  P +
Sbjct: 654 LEKAGLPILGTSPDAIDRAEDRERFAQLIEKLGLTQPENGVARSHEEAYRVAQRIGYPVM 713

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG---------IELTCG 180
           ++P        + V+   QS+   + ++ S +    +LI++++            + T  
Sbjct: 714 VRPSYVLGGRAMEVVYDQQSLERYMREAVSASPEHPVLIDRFLKEAIEVDLDLVADRTGA 773

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V+    L+  E A   S             +  + P  +  D+ + ++  A    + +G 
Sbjct: 774 VLVGGVLEHVEEAGVHSG----------DAACTLPPHSLSPDLVERMKDQAMALAKELGV 823

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
            G+    F      +K++ LE+N +   T     P ++   G    ++
Sbjct: 824 VGLMNVQFAI--QGKKIYILEVNPRASRT----VPFISKATGMPLAKI 865


>gi|332710439|ref|ZP_08430386.1| carbamoyl-phosphate synthase large subunit [Lyngbya majuscula 3L]
 gi|332350770|gb|EGJ30363.1| carbamoyl-phosphate synthase large subunit [Lyngbya majuscula 3L]
          Length = 1085

 Score = 72.5 bits (177), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 55/279 (19%), Positives = 102/279 (36%), Gaps = 36/279 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLA------------FN 56
           SG     AL + G++V  +         D + +    +  L P++               
Sbjct: 29  SGTQACKALREEGYEVVLVNSNPASIMTDPETADRTYIEPLTPEIVEKVIEKEQPCALLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  V      +LE   +    + + A   + D++  K+ +   GV VCPS +
Sbjct: 89  TMGGQTALNIAVDLAKNGVLEKHGVELIGAKLEAIEKAEDRLLFKEAMERIGVGVCPSGI 148

Query: 113 VN---RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            N        +Q + S P +I+P       G  +    +            +   Q+L+E
Sbjct: 149 ANNLKEAKAIAQKIGSYPLIIRPAFTLGGSGGGIAYNKEEYETMAQGGLDASPVSQILVE 208

Query: 170 QYVDG-IELTCGVMGD-ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKE 226
           Q + G  E    VM D A   V   ++   D           +S  V PA+ +    Y+ 
Sbjct: 209 QSLLGWKEYELEVMRDLADNVVIICSIENVDPMGIHT----GDSITVAPAQTLTDKEYQR 264

Query: 227 VQRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           ++  +    + IG   G S   F  +P++ +V  +E+N 
Sbjct: 265 LRDYSIKIIREIGVETGGSNIQFAVNPINGQVIVIEMNP 303



 Score = 50.5 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 29/212 (13%), Positives = 80/212 (37%), Gaps = 13/212 (6%)

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF--TMDSQHLISPPYVIKPLKGGSS 138
            +   +  ++ D+ R ++++    +   P+ +   +   ++    IS P V++P      
Sbjct: 674 GTSPDSIDVAEDRERFEKILRKLDIKQPPNGIARSYGEALEVAKRISYPVVVRPSYVLGG 733

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKS 197
             + ++  D+ +   +  +        +LI+++++  +E+    + D +  V    + + 
Sbjct: 734 RAMEIVYSDEDLKRYMKFAVQVEPEHPILIDKFLENAVEVDVDAIADHTGRVVIGGIME- 792

Query: 198 DFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256
             +  +    S +S   LP   +     + ++   +   +A+   G+    F        
Sbjct: 793 --HIEQAGIHSGDSACSLPHTSLTPVALETMRTWTYQLAKALKVVGLMNIQFAV--QGET 848

Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           V+ LE N +   T     P ++   G     L
Sbjct: 849 VYILEANPRASRT----IPYVSKATGVPLAGL 876


>gi|260220382|emb|CBA27866.1| Cyanophycin synthetase [Curvibacter putative symbiont of Hydra
           magnipapillata]
          Length = 602

 Score = 72.5 bits (177), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 28/112 (25%), Positives = 52/112 (46%), Gaps = 5/112 (4%)

Query: 88  ALSMDKMRSKQVVSSCGVPVC--PSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIV-I 144
           A++ DK  +K+++S+ GVPV    S++       +   I  P V+KP  G    G+ V I
Sbjct: 187 AIAQDKELTKKLLSAAGVPVPGGRSVIDAEDAWAAAQEIGLPVVVKPNDGNQGKGVTVNI 246

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK 196
              + +      +  +   D +L+E+++ G +    V+GD  +       PK
Sbjct: 247 TSKEQLLKAFAVAKEFR--DDILVERFMPGNDFRLLVVGDKLVAAARRDPPK 296


>gi|257062862|ref|YP_003142534.1| acetyl/propionyl-CoA carboxylase, alpha subunit [Slackia
           heliotrinireducens DSM 20476]
 gi|256790515|gb|ACV21185.1| acetyl/propionyl-CoA carboxylase, alpha subunit [Slackia
           heliotrinireducens DSM 20476]
          Length = 435

 Score = 72.5 bits (177), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 40/218 (18%), Positives = 86/218 (39%), Gaps = 16/218 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H  +G   E+    ++ +   I +            DK   K++++S G+ V P  + 
Sbjct: 77  AIHPGYGFLSENAHFASLCQQNGIVFIGPDPQRMEQVGDKATLKELMASHGLQVIPGAVE 136

Query: 113 --VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS--SSWNH--GDQL 166
                    +   I  P ++K   GG   GI +++  + +  +  Q+   ++N      L
Sbjct: 137 LHSLEEARAAADRIGYPVMLKARLGGGGRGIRLVQTPKDLEENWQQATTEAFNSFGDGGL 196

Query: 167 LIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
            +E+Y+     +   ++ D   +V  +        S + ++  L      PA +  +  +
Sbjct: 197 YLEKYIHPARHVELQILADEQGNVVCLGERD---CSLQRRHQKLVEESPSPA-VSPEQRE 252

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            +   A  A +AIG  G    +FL D      +++E+N
Sbjct: 253 RIMAQAVKAVKAIGYVGAGTLEFLLDE-EGTFWFMEMN 289


>gi|330995689|ref|ZP_08319587.1| phosphoribosylglycinamide formyltransferase 2 [Paraprevotella
           xylaniphila YIT 11841]
 gi|329574748|gb|EGG56309.1| phosphoribosylglycinamide formyltransferase 2 [Paraprevotella
           xylaniphila YIT 11841]
          Length = 389

 Score = 72.5 bits (177), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 37/236 (15%), Positives = 80/236 (33%), Gaps = 25/236 (10%)

Query: 33  VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
              +D D ++  V+   KPD+    +     E        +L +       ++ SA +++
Sbjct: 49  FHMLDGD-ALMAVVEKHKPDIIVPEIEAIRTE--------KLYDCEKMGIQVVPSARAVN 99

Query: 93  -----KMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVIK 145
                K   +   +  G+          +     +  +I  P +IKPL   S  G   + 
Sbjct: 100 FTMNRKEIRELAHTELGLKTADYRYAKTYDELKAAADVIGFPCIIKPLMSSSGHGQSKVD 159

Query: 146 KDQSIPLDLLQSSSWNHGD--QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSY 202
               +      + +   GD  ++++EQ++    E+T   +   +                
Sbjct: 160 SPADLAHAWEYACAGARGDVKEVIVEQFIPFDSEITLLTVTQQNGPTLFCQPIG------ 213

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
            ++          PA I  ++ K+ Q +A    +A+   GI   +F        +F
Sbjct: 214 HVQKGGDYRESFQPAAISPEMLKDAQDMAEKITRALTGAGIWGVEFFLSHKEGVIF 269


>gi|328543406|ref|YP_004303515.1| Propionyl-CoA carboxylase alpha chain [polymorphum gilvum
           SL003B-26A1]
 gi|326413151|gb|ADZ70214.1| Propionyl-CoA carboxylase alpha chain [Polymorphum gilvum
           SL003B-26A1]
          Length = 670

 Score = 72.5 bits (177), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 71/220 (32%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H  +G   E       L    I +      A     DK+ SK+  ++  V   P  L 
Sbjct: 77  AVHPGYGFLSERAAFPTALAAEGIVFIGPNPRAIEAMGDKIESKKFANAAKVSTVPGYLG 136

Query: 113 ---VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
                   ++    I  P +IK   GG   G+ +      +         +++S    D+
Sbjct: 137 IIETPEQAVEIAEEIGYPVMIKASAGGGGKGMRIAWNAAEVHEGFARSKSEAASSFGDDR 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+++ +   +   V+GD   +   +   +        K             +     
Sbjct: 197 VFIEKFIQNPRHIEIQVLGDKHGNAIYLGERECSIQRRNQK----VIEEAPSPLLDEATR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +   A    +A+        +F      R  F+LE+N 
Sbjct: 253 RAMGEQAVALARAVDYDSAGTVEF-VAGQDRSFFFLEMNT 291


>gi|321265812|ref|XP_003197622.1| pyruvate carboxylase [Cryptococcus gattii WM276]
 gi|317464102|gb|ADV25835.1| Pyruvate carboxylase, putative [Cryptococcus gattii WM276]
          Length = 1143

 Score = 72.5 bits (177), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 36/233 (15%), Positives = 78/233 (33%), Gaps = 23/233 (9%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVN 114
           +G   E+      +E L + +             K  ++ V    GVPV P     +   
Sbjct: 86  YGFLSENAAFATAVEALGVTFLGPTPTQMTSMGLKHEARAVAIKAGVPVVPGSEGAVNTL 145

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN----HGDQLLIEQ 170
              +     I  P ++K   GG  +G+ + + +Q +  +   + +          + IE+
Sbjct: 146 ENAVKIAGDIGYPILVKASGGGGGMGMQICRDEQDLIDNFDATKAKGQNLFKDPTVFIEK 205

Query: 171 Y-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           + +    +   + G+    V  +   +        K        +L + +  D+ K +  
Sbjct: 206 FIIHARHVEVQIFGNGEGHVVHMGERECSVQRRHQKVIEEAPCVLLGSDMGKDVRKRMCE 265

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRK--VFWLEIN------------VQPGM 268
            A    + +  R     +F+ D  S     ++LE+N              PG+
Sbjct: 266 AAVKLGELMNYRSAGTVEFVLDVDSPHYDFYFLELNARIQVEHAITEVTHPGL 318


>gi|284929083|ref|YP_003421605.1| carbamoyl-phosphate synthase large subunit [cyanobacterium UCYN-A]
 gi|284809542|gb|ADB95247.1| carbamoyl-phosphate synthase large subunit [cyanobacterium UCYN-A]
          Length = 1081

 Score = 72.5 bits (177), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 57/279 (20%), Positives = 106/279 (37%), Gaps = 36/279 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVDRS------------VGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D + S            V  ++A  +PD    
Sbjct: 29  SGTQACKALREEGYEVILVNSNPASIMTDPEMSDRTYIEPLVPDIVEKIIAKERPDALLA 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  V      +LE   +    + + A   + D+   K+ + S GVPVCPS +
Sbjct: 89  TMGGQTALNIAVSLAKSGVLEKYNVELIGARLSAIEKAEDRELFKKAMDSIGVPVCPSGI 148

Query: 113 VNRFTMDSQHLI---SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            N      +  I   S P +I+P       G  +    +     +      +   Q+L+E
Sbjct: 149 ANTLKEAREIAINIGSYPLIIRPAFTLGGTGGGIAYHQEEFEDIVQTGLDASPMSQILVE 208

Query: 170 QYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKE 226
           Q + G  E    VM D + +V  I   ++    ++       +S  V PA+ +    Y++
Sbjct: 209 QSLLGWKEYELEVMRDLADNVVIICSIEN----FDPMGVHTGDSITVAPAQTLTDKEYQK 264

Query: 227 VQRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           ++  +    + IG   G +   F  +P +     +E+N 
Sbjct: 265 LRDYSKSIIREIGVETGGANIQFSVNPANGDTIVIEMNP 303



 Score = 46.7 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 24/188 (12%), Positives = 70/188 (37%), Gaps = 9/188 (4%)

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGSS 138
            +   +  L+ D+ R ++++    +   P  +   F   +     I  P V++P      
Sbjct: 670 GTPPDSIDLAEDRERFEKILCDLQIKKPPGGIARSFEQSLSIASNIGYPVVVRPSYVLGG 729

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKS 197
             + ++  D+ +   +  +        +LI++++ D +E+    + D +  V    + + 
Sbjct: 730 RAMRIVYSDKELKHYMDYAIQVEPDHPILIDKFLEDAVEVDVDALCDKTGMVVIGGIME- 788

Query: 198 DFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256
             +  +    S +S   +P   +   +   +++       ++   G+    +       +
Sbjct: 789 --HIEQAGVHSGDSACSIPFTTLSEKVLDIIRKWTSQLANSLQVIGLINIQYAV--QQEE 844

Query: 257 VFWLEINV 264
           V+ LE N 
Sbjct: 845 VYILEANP 852


>gi|282896367|ref|ZP_06304388.1| Carbamoyl-phosphate synthase, large subunit, glutamine-dependent
           [Raphidiopsis brookii D9]
 gi|281198655|gb|EFA73535.1| Carbamoyl-phosphate synthase, large subunit, glutamine-dependent
           [Raphidiopsis brookii D9]
          Length = 1083

 Score = 72.5 bits (177), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 59/279 (21%), Positives = 102/279 (36%), Gaps = 36/279 (12%)

Query: 18  SGKACASALEDAGFKVSQID------------VDRS---------VGLVLAHLKPDLAFN 56
           SG     AL + GF+V  ++             DR+         V  V+A  +PD    
Sbjct: 29  SGTQACKALREEGFEVVLVNSNPATIMTDPETADRTYIEPLTPEMVAKVIAKERPDALLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G    +  V      +LE   +    + + A   + D+      +   GV VCPS  
Sbjct: 89  TMGGQTALNIAVALAKNGVLEEYNVELIGAKLPAIEKAEDRKLFNDAMEKIGVSVCPSGT 148

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
              +      +Q + S P +I+P       G  +    +   +        +   Q+LI+
Sbjct: 149 ASTLEESKAIAQRIGSYPLIIRPAFTMGGTGGGIAYNKEEFEVMAQVGIDASPVSQILID 208

Query: 170 QYVDG-IELTCGVMGD-ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKE 226
           Q + G  E    VM D A   V   ++   D           +S  V PA+ +    Y+ 
Sbjct: 209 QSLLGWKEYELEVMRDLADNVVIICSIENLDPMGIHT----GDSITVAPAQTLTDKEYQR 264

Query: 227 VQRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           ++ +A    + IG   G S   F  +P++  V  +E+N 
Sbjct: 265 LRDMAIKIIREIGVETGGSNIQFAVNPVNGDVVVIEMNP 303



 Score = 47.4 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/215 (13%), Positives = 77/215 (35%), Gaps = 14/215 (6%)

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGSS 138
            +   +  ++ ++ R ++++    +    + +   +   +     I  P V++P      
Sbjct: 668 GTSPDSIDMAENRERFEKILEELKIAQPANGIARSYEDALIVAKRIGYPVVVRPSYVLGG 727

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKS 197
             + ++  D  +   +  +        +LI+++++  IE+    + D    V    + + 
Sbjct: 728 RAMEIVYSDSELERYMSFAVQVEPEHPILIDKFLENAIEVDVDAIADHQGRVVIGGIME- 786

Query: 198 DFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR- 255
             +  +    S +S   LP   +   +  +++       +A+   G+    F     S  
Sbjct: 787 --HIEQAGIHSGDSACSLPSISLSPAVLNQIRTWTVELAKALSVVGLMNIQFAVVGASSY 844

Query: 256 --KVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
             +V+ LE N +   T     P ++   G     L
Sbjct: 845 SPQVYILEANPRASRT----VPFVSKATGVPLARL 875


>gi|295821183|ref|NP_001171475.1| propionyl-CoA carboxylase alpha chain, mitochondrial isoform c
           precursor [Homo sapiens]
          Length = 681

 Score = 72.5 bits (177), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 75/220 (34%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      L   ++ +      A     DK+ SK +     V   P    
Sbjct: 138 AVHPGYGFLSENKEFARCLAAEDVVFIGPDTHAIQAMGDKIESKLLAKKAEVNTIPGFDG 197

Query: 112 LVNRFTMDS--QHLISPPYVIKPLKGGSSLGIIVIKKDQS----IPLDLLQSSSWNHGDQ 165
           +V            I  P +IK   GG   G+ +   D+       L   +++S    D+
Sbjct: 198 VVKDAEEAVRIAREIGYPVMIKASAGGGGKGMRIAWDDEETRDGFRLSSQEAASSFGDDR 257

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           LLIE+++D    +   V+GD   +   +   +        K             +  +  
Sbjct: 258 LLIEKFIDNPRHIEIQVLGDKHGNALWLNERECSIQRRNQK----VVEEAPSIFLDAETR 313

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +   A    +A+        +FL D      ++LE+N 
Sbjct: 314 RAMGEQAVALARAVKYSSAGTVEFLVDSKKN-FYFLEMNT 352


>gi|114650526|ref|XP_001148007.1| PREDICTED: propionyl-Coenzyme A carboxylase, alpha polypeptide
           isoform 1 [Pan troglodytes]
          Length = 615

 Score = 72.5 bits (177), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 75/220 (34%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      L   ++ +      A     DK+ SK +     V   P    
Sbjct: 138 AVHPGYGFLSENKEFARCLAAEDVVFIGPDTHAIQAMGDKIESKLLAKKAEVNTIPGFDG 197

Query: 112 LVNRFTMDS--QHLISPPYVIKPLKGGSSLGIIVIKKDQS----IPLDLLQSSSWNHGDQ 165
           +V            I  P +IK   GG   G+ +   D+       L   +++S    D+
Sbjct: 198 VVKDAEEAVRIAREIGYPVMIKASAGGGGKGMRIAWDDEETRDGFRLSSQEAASSFGDDR 257

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           LLIE+++D    +   V+GD   +   +   +        K             +  +  
Sbjct: 258 LLIEKFIDNPRHIEIQVLGDKHGNALWLNERECSIQRRNQK----VVEEAPSIFLDAETR 313

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +   A    +A+        +FL D      ++LE+N 
Sbjct: 314 RAMGEQAVALARAVKYSSAGTVEFLVDSKKN-FYFLEMNT 352


>gi|21673886|ref|NP_661951.1| phosphoribosylglycinamide formyltransferase 2 [Chlorobium tepidum
           TLS]
 gi|81791308|sp|Q8KDJ0|PURT_CHLTE RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|21647023|gb|AAM72293.1| phosphoribosylglycinamide formyltransferase 2 [Chlorobium tepidum
           TLS]
          Length = 392

 Score = 72.5 bits (177), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 48/280 (17%), Positives = 94/280 (33%), Gaps = 42/280 (15%)

Query: 32  KVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSM 91
           +V  +   R++  ++A  +PD+    +     E           +       ++ SA + 
Sbjct: 47  EVIDMLDGRALDAIVAKHRPDIIVPEIEAIRTE--------RFYDYEKQGIQVVPSARAA 98

Query: 92  D-----KMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVI 144
           +     K          G+        +       +   +  P V+KPL   S  G   +
Sbjct: 99  NFTMNRKAIRDLAARDLGLRTANYRYASSLEELRSAVGEVGLPCVVKPLMSSSGKGQSTV 158

Query: 145 KKDQSIPLDLLQSSSWNHGD--QLLIEQYVDGIE----LTCGVMGDASLDVTEIAVPKSD 198
           + +  I      S S   GD  ++++E +V        LT       +L    I   + +
Sbjct: 159 RSEAEIEAAWSYSQSGKRGDIAEVIVEAFVPFHTEITLLTVTQKNGPTLFCPPIG-HRQE 217

Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
              Y+  +         P +I  +  +E Q +A    +A+   GI   +F        V+
Sbjct: 218 RGDYQESW--------QPCRISPEQLEEAQNIAGKVTEALTGAGIWGVEFFL--ADDGVY 267

Query: 259 WLEINVQP---GM-----TPV-SIFPEMAAYA-GYSFREL 288
           + E++ +P   GM     T   S F   A    G    ++
Sbjct: 268 FSELSPRPHDTGMVTLAGTQNLSEFELHARAVLGLPVPDI 307


>gi|325000475|ref|ZP_08121587.1| pyruvate carboxylase [Pseudonocardia sp. P1]
          Length = 1126

 Score = 72.5 bits (177), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 39/246 (15%), Positives = 83/246 (33%), Gaps = 16/246 (6%)

Query: 28  DAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87
           + G  V        V         D  +   +G   E+  +        I +        
Sbjct: 53  EQGHPVRAYLSVDEVVRAAKKAGADAVYPG-YGFMSENPDLARACREEGITFVGPPTEVL 111

Query: 88  ALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD---SQHLISPPYVIKPLKGGSSLGIIVI 144
            L+ +K R+       GVPV  S   +    +   +   I  P  +K + GG   G+  +
Sbjct: 112 HLTGNKFRAVAAAREAGVPVLESSDPSSDVDELLAASENIDFPIFVKAVAGGGGRGMRRV 171

Query: 145 KK----DQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDF 199
           ++     ++I   + ++ S      + +EQ  V+   +   ++ DA  +V  +       
Sbjct: 172 QEPGALREAIEAAMREAESAFGDPTVFLEQAVVNPRHIEVQILADADGNVVHLYE----- 226

Query: 200 YSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
               ++        + PA  +  ++   +   A    + IG       +FL D   +   
Sbjct: 227 RDCSVQRRHQKVVEIAPAPNLDPEVRDAICADAVNFARQIGYVNAGTVEFLLDERGKH-H 285

Query: 259 WLEINV 264
           ++E+N 
Sbjct: 286 FIEMNP 291


>gi|260779559|ref|ZP_05888449.1| biotin carboxylase of acetyl-CoA carboxylase [Vibrio
           coralliilyticus ATCC BAA-450]
 gi|260604368|gb|EEX30672.1| biotin carboxylase of acetyl-CoA carboxylase [Vibrio
           coralliilyticus ATCC BAA-450]
          Length = 447

 Score = 72.5 bits (177), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 37/223 (16%), Positives = 80/223 (35%), Gaps = 21/223 (9%)

Query: 56  NVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111
             +H  +G   E+      +E     +         +  DK+ +   +   GVP  P   
Sbjct: 76  IAIHPGYGFLSENADFAEQVERSGFIFVGPKAETIRIMGDKVSAITAMKKAGVPCVPGSD 135

Query: 112 -LVNRFTMDSQH---LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHG 163
             +N     ++     I  P +IK   GG   G+ V++ +  +   +     ++ +  + 
Sbjct: 136 GPLNDDEATNKAHAKRIGYPVIIKASGGGGGRGMRVVRSEAELVEAIAMTRAEAKAAFNN 195

Query: 164 DQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPL 221
           D + +E++++    +   V+ D       +            K          PA  I  
Sbjct: 196 DMVYMEKFLENPRHVEVQVIADGQGGAIHLGERDCSMQRRHQK-----VVEEAPAPGITA 250

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           ++ K +      A   IG RG    +FL+   + + +++E+N 
Sbjct: 251 EMRKYIGERCTRACLEIGYRGAGTFEFLY--ENGEFYFIEMNT 291


>gi|17546240|ref|NP_519642.1| carbamoyl phosphate synthase large subunit [Ralstonia solanacearum
           GMI1000]
 gi|22095509|sp|Q8XZ83|CARB_RALSO RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|17428537|emb|CAD15223.1| probable carbamoyl-phosphate synthase large chain
           (carbamoyl-phosphate synthetase ammonia chain) protein
           [Ralstonia solanacearum GMI1000]
          Length = 1081

 Score = 72.5 bits (177), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 31/222 (13%), Positives = 82/222 (36%), Gaps = 12/222 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQHLISPPYV 129
           LE   +P   +       + D+ R ++++   G+   P+         +     I  P V
Sbjct: 658 LEANGVPIIGTTPDMIDAAEDRERFQKLLHDLGLRQPPNRTARAEDEALKLADEIGYPLV 717

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++ + + +   + ++   ++   +L+++++ D IE     + D    
Sbjct: 718 VRPSYVLGGRAMEIVHEPRDLERYMREAVKVSNDSPVLLDRFLNDAIECDVDCLSDGKRV 777

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                +   +       +S  ++  + P  +      E++R      +A+   G+    F
Sbjct: 778 FIGGVMEHIEQAGV---HSGDSACSLPPYSLSQATVDELKRQTAAMARALNVIGLMNVQF 834

Query: 249 LFDPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
                  +  V+ LE+N +   T     P ++   G S  ++
Sbjct: 835 AIQQKGGEDIVYVLEVNPRASRT----VPYVSKATGISLAKV 872



 Score = 62.4 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 50/285 (17%), Positives = 96/285 (33%), Gaps = 42/285 (14%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + GFKV  +              DV          V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGFKVVLVNSNPATIMTDPSTADVTYIEPITWEVVERIIAKERPDAILP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G    +  +      +LE   +    +   A   + D+ + K+ ++  G+    S  
Sbjct: 89  TMGGQTALNCALDLHRHGVLEKYNVELIGASPEAIDKAEDRQKFKEAMTKIGLGSAKSGI 148

Query: 111 -------ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
                  + V             P VI+P       G  +    +       +    +  
Sbjct: 149 AHSLEEALAVQAQIARETSSGGYPIVIRPSFTLGGTGGGIAYNREEFEDICKRGLDLSPT 208

Query: 164 DQLLIEQYVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IP 220
           ++LLIE+ + G  E    V+ D   + +   ++   D           +S  V PA+ + 
Sbjct: 209 NELLIEESLLGWKEYEMEVVRDKKDNCIIVCSIENLDPMGIHT----GDSITVAPAQTLT 264

Query: 221 LDIYKEVQRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
              Y+ ++  +    + IG   G S   F  +P   ++  +E+N 
Sbjct: 265 DKEYQILRNASLAVLREIGVDTGGSNVQFSINPEDGRMIVIEMNP 309


>gi|298208832|ref|YP_003717011.1| biotin carboxylase (accC) [Croceibacter atlanticus HTCC2559]
 gi|83848759|gb|EAP86628.1| biotin carboxylase (accC) [Croceibacter atlanticus HTCC2559]
          Length = 480

 Score = 72.5 bits (177), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 78/220 (35%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      ++   I +      A  +   K+ +K+ V S  +P+ P I  
Sbjct: 76  AIHPGYGFLSENAGFAKKVKESGIVWIGPDTHAIEVMGSKLAAKEAVKSYDIPMVPGIDE 135

Query: 114 NRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSWNHGDQ 165
               +D        I  P +IK   GG   G+ V++K+  +       + ++ S      
Sbjct: 136 AIEDVDKATSIAKEIGFPILIKASAGGGGKGMRVVEKETELESQMKRAISEAKSAFGDGS 195

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+Y+     +   V+ D   +   +   +        K           + +   + 
Sbjct: 196 VFIEKYIASPRHIEIQVLADKHGNTVHLFERECSIQRRHQK----VVEEAPSSVLSETLR 251

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +   A    +A    G    +FL D      ++LE+N 
Sbjct: 252 ENMGAAAVRVAKACDYVGAGTVEFLID-DDHNFYFLEMNT 290


>gi|156540073|ref|XP_001600219.1| PREDICTED: similar to pyruvate carboxylase [Nasonia vitripennis]
          Length = 1196

 Score = 72.5 bits (177), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 30/205 (14%), Positives = 77/205 (37%), Gaps = 17/205 (8%)

Query: 69  QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLI 124
           Q++++   I +            DK+ +++     GVP+ P     +  +   M+     
Sbjct: 129 QSVID-AGIRFIGPKPSVVQQMGDKVAARKAAIESGVPIVPGTDGPVTTSDEAMEFCTKY 187

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPL----DLLQSSSWNHGDQLLIEQYVD-GIELTC 179
             P + K   GG   G+ V+K+ + +         ++ +      + IE++++    +  
Sbjct: 188 GLPVIFKAAYGGGGRGMRVVKQMEEVREMFDRASSEAKAAFGDGAMFIEKFIERPRHIEV 247

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAI 238
            ++GD + +V  +           ++        + PA  +   +  ++   A    + +
Sbjct: 248 QLLGDHAGNVVHLYE-----RDCSVQRRHQKVVEIAPAPTLNPTVRDKMTEHAIRLAKHV 302

Query: 239 GCRGISRSDFLFDPLSRKVFWLEIN 263
           G       +FL D      +++E+N
Sbjct: 303 GYGNAGTVEFLVDETGN-FYFIEVN 326


>gi|107101440|ref|ZP_01365358.1| hypothetical protein PaerPA_01002480 [Pseudomonas aeruginosa PACS2]
 gi|254235094|ref|ZP_04928417.1| alpha subunit of geranoyl-CoA carboxylase, GnyA [Pseudomonas
           aeruginosa C3719]
 gi|126167025|gb|EAZ52536.1| alpha subunit of geranoyl-CoA carboxylase, GnyA [Pseudomonas
           aeruginosa C3719]
          Length = 655

 Score = 72.5 bits (177), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 79/220 (35%), Gaps = 19/220 (8%)

Query: 58  LHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
           +H  +G   E+       E   + +      A      K  +K ++   GVP+ P     
Sbjct: 84  IHPGYGFLSENADFARACEEAGLLFLGPPAAAIDAMGSKSAAKALMEEAGVPLVPGYHGE 143

Query: 115 RFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGDQL 166
              ++        I  P ++K   GG   G+ V++ +  +   L     ++ +     ++
Sbjct: 144 AQDLETFRREAGRIGYPVLLKAAAGGGGKGMKVVEHEAELAEALSSAQREAKAAFGDARM 203

Query: 167 LIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIY 224
           L+E+Y +    +   V  D+      +            K          PA  +  ++ 
Sbjct: 204 LVEKYLLKPRHVEIQVFADSHGHCLYLNERDCSIQRRHQK-----VVEEAPAPGLGAELR 258

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +   A  A QAIG  G    +FL D    + F++E+N 
Sbjct: 259 RAMGEAAVRAAQAIGYVGAGTVEFLLDER-GQFFFMEMNT 297


>gi|325282763|ref|YP_004255304.1| carbamoyl-phosphate synthase, large subunit [Deinococcus
           proteolyticus MRP]
 gi|324314572|gb|ADY25687.1| carbamoyl-phosphate synthase, large subunit [Deinococcus
           proteolyticus MRP]
          Length = 1023

 Score = 72.5 bits (177), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 54/293 (18%), Positives = 100/293 (34%), Gaps = 46/293 (15%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI---------DVD------------RSVGLV 45
           G ++E + S   G     AL+  G++V  +         D D              V  V
Sbjct: 21  GQAAEFDYS---GTQALKALKSEGYRVILVNSNPATIMTDPDLADATYLEPLTPEFVRRV 77

Query: 46  LAHLKPDLAFNVLHGNFG--------EDGLVQAILELLEIPYTHSGILASALSMDKMRSK 97
           +   +PD     L G           E+G     LE   +    +   A     D+   +
Sbjct: 78  IEKERPDAVLPTLGGQTALNLAMELHENGT----LEEFGVELIGANAEAIHKGEDREAFQ 133

Query: 98  QVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
             +   GV      +V+     ++ Q  +  P VI+P       G  +    +       
Sbjct: 134 AAMQKIGVETARGKMVHSMEEAIEYQKELGLPVVIRPSFTLGGTGGGIAHTYEDFLKITE 193

Query: 156 QSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTH 213
                +    +L+E+ + G  E    VM D +  V  I   ++    ++       +S  
Sbjct: 194 GGLRDSPVTSVLLEESILGWKEYELEVMRDTADTVVIITSIEN----FDPMGVHTGDSIT 249

Query: 214 VLPAK-IPLDIYKEVQRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
           V PA+ +    Y+E++  +    + IG   G S   +  +P   +V  +E+N 
Sbjct: 250 VAPAQTLSDVEYQELRDQSLKIIREIGVDTGGSNIQYAVNPEDGRVIVIEMNP 302



 Score = 56.7 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 36/266 (13%), Positives = 90/266 (33%), Gaps = 34/266 (12%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVL-HGNFGEDGLV------ 68
           AL++AG++   +         D D +  L    L  +   N++ H      G++      
Sbjct: 580 ALQEAGYETIMVNSNPETVSTDYDTADRLYFEPLTFEDVMNIIEHEKP--VGVIVQLGGQ 637

Query: 69  ------QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-- 120
                 Q + +    P   +       + D+    ++    G+P     +    T     
Sbjct: 638 TPLKLAQRLAD-AGAPIIGTSPETIHQAEDRASFNELCERLGIPQPLGKVAATPTQAERL 696

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS-SSWNHGDQLLIEQYVDGI-ELT 178
              +  P + +P        +  ++    +   L +  ++      +L++Q+++G  EL 
Sbjct: 697 AEELGFPLMARPSYVLGGRAMRTVRSMPELKTYLKEVYAAVEGQPSILLDQFLEGALELD 756

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              + D    V    +   +       +S  ++  + P  +  ++ + V++        +
Sbjct: 757 VDCLCDGQSAVVAGIMEHIEAAGV---HSGDSACIIPPVSLSAELLETVKKTTERLALEL 813

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINV 264
           G RG+   +  +       + LE N 
Sbjct: 814 GVRGL--MNVQYAVKDGVPYILEANP 837


>gi|297530689|ref|YP_003671964.1| carbamoyl-phosphate synthase, large subunit [Geobacillus sp.
           C56-T3]
 gi|297253941|gb|ADI27387.1| carbamoyl-phosphate synthase, large subunit [Geobacillus sp.
           C56-T3]
          Length = 1065

 Score = 72.5 bits (177), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 28/214 (13%), Positives = 76/214 (35%), Gaps = 14/214 (6%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC--PSILVNRFTMDSQHLISPPYV 129
           LE   +    + +     + D+ + +Q +S  G+P     + +     +     I  P +
Sbjct: 646 LEARGVRLLGTTLEDLDRAEDRDKFEQALSELGIPKPAGKTAVSVEEAVAIAEEIGYPVL 705

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           ++P        + ++   + +   +  +   N    +L+++Y+ G E+    + D    V
Sbjct: 706 VRPSYVLGGRAMEIVYNREELLHYMEHAVRVNPQHPVLVDRYITGKEVEVDAIADGETVV 765

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               +   +           +S  V P + +  ++  ++        + +   G+    F
Sbjct: 766 IPGIMEHIERAGVHS----GDSIAVYPPQTLSAEVIDKIADYTIRLARGLHIVGLLNIQF 821

Query: 249 LFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277
           +       V+ LE+N       P ++ ++  P  
Sbjct: 822 VV--AGSDVYVLEVNPRSSRTVPFLSKITGVPMA 853



 Score = 67.5 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 52/297 (17%), Positives = 114/297 (38%), Gaps = 36/297 (12%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL++ G+KV  ++ +                       V  ++   +PD     L G  G
Sbjct: 36  ALKEEGYKVILVNSNPATIMTDTEIADKVYMEPLTLEFVARIIRKERPDAILPTLGGQTG 95

Query: 64  EDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
            +  V+     +LE   +    + + A   + D+ + + +++  G PV  S +++     
Sbjct: 96  LNLAVELAKAGVLEECGVEILGTKLEAIEKAEDREQFRALMNELGEPVPESAIIHSLEEA 155

Query: 120 SQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IE 176
                 I  P +++P       G  +   ++ +   +      +   Q L+E+ + G  E
Sbjct: 156 YAFVEQIGYPVIVRPAFTLGGTGGGICTNEEELVEIVSTGLKLSPVHQCLLERSIAGYKE 215

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAH 235
           +   VM DA+ +   I V   +     +   + +S  V P++ +    Y+ ++  +    
Sbjct: 216 IEYEVMRDANDNA--IVVCNMENID-PVGIHTGDSIVVAPSQTLSDREYQLLRNASLKII 272

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +A+G  G        DP S + + +E+N  P ++  S     +   GY   +L   +
Sbjct: 273 RALGIEGGCNVQLALDPDSFRYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAKI 325


>gi|160936933|ref|ZP_02084297.1| hypothetical protein CLOBOL_01822 [Clostridium bolteae ATCC
           BAA-613]
 gi|158440123|gb|EDP17870.1| hypothetical protein CLOBOL_01822 [Clostridium bolteae ATCC
           BAA-613]
          Length = 452

 Score = 72.5 bits (177), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 75/221 (33%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  FG   E+     +     I +            +K  +++ +   GVPV P    
Sbjct: 79  AIHPGFGFLSENARFAKLCAECNIAFIGPSAEIINKMGNKSEARKTMMEAGVPVVPGSKE 138

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS----IPLDLLQSSSWNHGDQ 165
            +      +     I  P +IK   GG   G+ + +  +          ++S      D 
Sbjct: 139 PVHAAEDGLAMAKEIGFPVMIKASSGGGGKGMRISRSPEDFTELFNAAQMESVKGFSDDT 198

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           + IE+Y++    +   +M D   +V  +            K          P   I   +
Sbjct: 199 MYIEKYIEKPRHVEFQIMADKHGNVVHLGERDCSIQRRHQK-----VLEEAPCDVISPGL 253

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            K +   A  A +A+G       +FL D   +  +++E+N 
Sbjct: 254 RKAMGDTAVKATKAVGYENAGTIEFLLDK-DKNFYFMEMNT 293


>gi|88799445|ref|ZP_01115022.1| acetyl-CoA carboxylase [Reinekea sp. MED297]
 gi|88777755|gb|EAR08953.1| acetyl-CoA carboxylase [Reinekea sp. MED297]
          Length = 448

 Score = 72.5 bits (177), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 39/223 (17%), Positives = 76/223 (34%), Gaps = 23/223 (10%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E       +E     +         L  DK+ + + +   GVP  P    
Sbjct: 77  AIHPGYGFLAERADFAEQIEKSGFKFIGPTADVIRLMGDKVSAIEAMKKAGVPTVPGSDG 136

Query: 112 LVNRF---TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHG 163
            V +      +    I  P +IK   GG   G+ V+ +++ +   +       +S++   
Sbjct: 137 PVPKDPTRCKEIAQRIGYPVIIKAAAGGGGRGMRVVHEEKDLIGSIEVTQSEAASAFG-D 195

Query: 164 DQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPL 221
             + +E+++     +   V+ D   +               L+          PA  I  
Sbjct: 196 GTVYMEKFLTNPRHVEIQVIADGQGNAI-----HLGDRDCSLQRRHQKVLEEAPAPHIDP 250

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           D   +VQ     A   I  RG    +FL+       +++E+N 
Sbjct: 251 DARAKVQEACVNACINIHYRGAGTFEFLY--EDGHFYFIEMNT 291


>gi|320539774|ref|ZP_08039435.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Serratia
           symbiotica str. Tucson]
 gi|320030177|gb|EFW12195.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Serratia
           symbiotica str. Tucson]
          Length = 446

 Score = 72.1 bits (176), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 81/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         L  DK+ +   +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAEQVERSGFIFIGPKAETIRLMGDKVSAINAMKKAGVPCVPGSDG 136

Query: 112 -LVNRFTMD--SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
            L +    +      I  P +IK   GG   G+ V+  D+ +   +     ++ +  + D
Sbjct: 137 PLTDDMDKNHAFAKRIGYPVIIKASGGGGGRGMRVVHSDKDLEQSINMTKAEAKAAFNND 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+Y++    +   V+ D   +   +A           K          PA  I  D
Sbjct: 197 MVYMEKYLENPRHIEIQVLADGQGNAIYLAERDCSMQRRHQK-----VVEEAPAPGITSD 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + + +      A   IG RG    +FL+   + + +++E+N 
Sbjct: 252 MRRYIGERCSKACVEIGYRGAGTFEFLY--ENGEFYFIEMNT 291


>gi|313111175|ref|ZP_07796998.1| alpha subunit of geranoyl-CoA carboxylase, GnyA [Pseudomonas
           aeruginosa 39016]
 gi|310883500|gb|EFQ42094.1| alpha subunit of geranoyl-CoA carboxylase, GnyA [Pseudomonas
           aeruginosa 39016]
          Length = 655

 Score = 72.1 bits (176), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 77/220 (35%), Gaps = 19/220 (8%)

Query: 58  LHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
           +H  +G   E+       E   + +      A      K  +K ++   GVP+ P     
Sbjct: 84  IHPGYGFLSENADFARACEEAGLLFLGPPAAAIDAMGSKSAAKALMEEAGVPLVPGYHGE 143

Query: 115 RFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGDQL 166
               +        I  P ++K   GG   G+ V++ +  +   L     ++ +     ++
Sbjct: 144 AQDAETFRREAGRIGYPVLLKAAAGGGGKGMKVVEHEAELAEALSSAQREAKAAFGDARM 203

Query: 167 LIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIY 224
           L+E+Y +    +   V  D       +            K          PA  +  ++ 
Sbjct: 204 LVEKYLLKPRHVEIQVFADRHGHCLYLNERDCSIQRRHQK-----VVEEAPAPGLGAELR 258

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +   A  A QAIG  G    +FL D    + F++E+N 
Sbjct: 259 RAMGEAAVRAAQAIGYVGAGTVEFLLDER-GQFFFMEMNT 297


>gi|296389578|ref|ZP_06879053.1| alpha subunit of geranoyl-CoA carboxylase, GnyA [Pseudomonas
           aeruginosa PAb1]
          Length = 655

 Score = 72.1 bits (176), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 77/220 (35%), Gaps = 19/220 (8%)

Query: 58  LHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
           +H  +G   E+       E   + +      A      K  +K ++   GVP+ P     
Sbjct: 84  IHPGYGFLSENADFARACEEAGLLFLGPPAAAIDAMGSKSAAKALMEEAGVPLVPGYHGE 143

Query: 115 RFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGDQL 166
               +        I  P ++K   GG   G+ V++ +  +   L     ++ +     ++
Sbjct: 144 AQDAETFRREAGRIGYPVLLKAAAGGGGKGMKVVEHEAELAEALSSAQREAKAAFGDARM 203

Query: 167 LIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIY 224
           L+E+Y +    +   V  D       +            K          PA  +  ++ 
Sbjct: 204 LVEKYLLKPRHVEIQVFADRHGHCLYLNERDCSIQRRHQK-----VVEEAPAPGLGAELR 258

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +   A  A QAIG  G    +FL D    + F++E+N 
Sbjct: 259 RAMGEAAVRAAQAIGYVGAGTVEFLLDER-GQFFFMEMNT 297


>gi|282860660|ref|ZP_06269726.1| Carbamoyl-phosphate synthase L chain ATP-binding [Streptomyces sp.
           ACTE]
 gi|282564396|gb|EFB69932.1| Carbamoyl-phosphate synthase L chain ATP-binding [Streptomyces sp.
           ACTE]
          Length = 658

 Score = 72.1 bits (176), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 39/196 (19%), Positives = 76/196 (38%), Gaps = 17/196 (8%)

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLK 134
             + +    + A  L   K R+K+++++ GVP     L+      +      P ++K   
Sbjct: 99  AGLTWVGPPVKAIELMASKTRAKELMAAAGVP-----LLAPVDPAAATAEDLPLLLKASA 153

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQLLIEQYVD-GIELTCGVMGDASLDV 189
           GG   G+ ++++   +P +L  +++         ++  E YV+ G  +   VM D     
Sbjct: 154 GGGGRGMRIVREIGDLPGELTAAAAEAAAAFGDGEVFAEPYVERGRHVEVQVMADD---- 209

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               V         L+          PA  +   +   +   A  A QA+G RG    +F
Sbjct: 210 -RGTVWALGTRDCSLQRRHQKVVEEAPAPGLDDALRARLHDAAVAAAQAVGYRGAGTVEF 268

Query: 249 LFDPLSRKVFWLEINV 264
           L      + ++LE+N 
Sbjct: 269 LLSA-DGRPYFLEMNT 283


>gi|332158139|ref|YP_004423418.1| carbamoyl phosphate synthase large subunit [Pyrococcus sp. NA2]
 gi|331033602|gb|AEC51414.1| carbamoyl phosphate synthase large subunit [Pyrococcus sp. NA2]
          Length = 1059

 Score = 72.1 bits (176), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 90/222 (40%), Gaps = 19/222 (8%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           LE   +    +   +  ++ ++ +  +++   G+   P          +     +  P +
Sbjct: 636 LEQNGVRLLGTRGTSVDIAENRAKFSKLLEDLGIKQPPWTTAKSIEEVLRFTEEVGYPVM 695

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM--GDASL 187
           I+P    S   + +   ++ +   L Q++  +    +++ +++D +E     +  G   +
Sbjct: 696 IRPSYVLSGTAMKIAYNEKELKEYLSQATKVSPEHPVVVSKFLDAMEAEIDAVSDGKKVV 755

Query: 188 DVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRS 246
            VT   + K+  +S        +ST V P + +     +++Q +A     A+G +G    
Sbjct: 756 GVTLEHIEKAGVHS-------GDSTMVTPYRNLKPRQVRKMQEIALELALALGIKGPFNV 808

Query: 247 DFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
            FL       V+ LE+N++   T  S+ P  +   G +  EL
Sbjct: 809 QFLI---GDDVYVLELNLR---TSRSM-PFSSKARGVNLMEL 843



 Score = 72.1 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 53/325 (16%), Positives = 120/325 (36%), Gaps = 52/325 (16%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNV-LHGNFGE- 64
           G ++E + S   G     AL++ G +   ++ +    +  +H   D  + + L   F E 
Sbjct: 16  GEAAEFDYS---GSQALKALKEEGIETILVNPN-VATIQTSHEMADRVYLLPLDVKFVEK 71

Query: 65  -------DGLV-----------------QAILELLEIPYTHSGILASALSMDKMRSKQVV 100
                  DG++                   IL+   +    + I     ++D+ + ++ +
Sbjct: 72  VIKKEKPDGILLGFGGQSALSLGVALYESGILDKYGVKVLGTPIEGIKKALDRGKFRKTM 131

Query: 101 SSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS 158
              G+P+ PS         ++    I  P +++        G  V    +     ++++ 
Sbjct: 132 MKAGLPIPPSGAAKSVEEAIEIAEKIGFPVIVRVSFNLGGRGSFVAWNREEFENYIIRAF 191

Query: 159 SWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLP 216
           + +   ++L+E+Y+    E+   V+ D   +   +A  ++    ++       +S  + P
Sbjct: 192 AQSEIGKVLVEKYLYHWKEIEFEVVRDKKGNAVAVACLEN----FDPMGVHTGDSIVIAP 247

Query: 217 AK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI-- 273
            + +    Y+ ++  A    +AI   G        +P S + + +E    P M+  S   
Sbjct: 248 CQTLTNREYQMLRNAAIKVAEAIDLIGECNVQLALNPKSEEFYVIE--TNPRMSRSSALA 305

Query: 274 -----FPEMAAYA----GYSFRELL 289
                +P     A    GY+  ELL
Sbjct: 306 SKVTGYPLAYIAAKLALGYTLDELL 330


>gi|283954593|ref|ZP_06372112.1| acetyl-CoA carboxylase, biotin carboxylase [Campylobacter jejuni
           subsp. jejuni 414]
 gi|283793997|gb|EFC32747.1| acetyl-CoA carboxylase, biotin carboxylase [Campylobacter jejuni
           subsp. jejuni 414]
          Length = 481

 Score = 72.1 bits (176), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 45/244 (18%), Positives = 99/244 (40%), Gaps = 25/244 (10%)

Query: 35  QIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSM 91
            +DVDR +  +      D     +H  +G   E+       E   I +            
Sbjct: 61  YLDVDR-IVEIAKACGAD----AIHPGYGFLSENYEFAKACEDAGIIFIGPKSEVIHKMG 115

Query: 92  DKMRSKQVVSSCGVPVCPSIL-VNRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKK 146
           +K  ++++++  G+P+ P    +N ++++        I  P ++K   GG   GI V+ K
Sbjct: 116 NKNIARKLMAKNGIPIVPGTEKLNSYSLEEIKIFAEKIGYPIILKASGGGGGRGIRVVHK 175

Query: 147 DQSIPLDLL----QSSSWNHGDQLLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYS 201
           +Q +         ++ ++ + D++ +E+Y V+   +   ++GD   ++  +         
Sbjct: 176 EQELENAFESCKREALTYFNNDEVFMEKYVVNPRHIEFQILGDNYGNIIHLCERDCSIQR 235

Query: 202 YELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260
              K        + P   I  ++ K +   A  A +A+G       +FL D  +R  +++
Sbjct: 236 RHQK-----VIEIAPCPGISDNLRKTMGVTAVAAAKAVGYTNAGTIEFLLDDYNR-FYFM 289

Query: 261 EINV 264
           E+N 
Sbjct: 290 EMNT 293


>gi|260774376|ref|ZP_05883290.1| biotin carboxylase of acetyl-CoA carboxylase [Vibrio metschnikovii
           CIP 69.14]
 gi|260610503|gb|EEX35708.1| biotin carboxylase of acetyl-CoA carboxylase [Vibrio metschnikovii
           CIP 69.14]
          Length = 449

 Score = 72.1 bits (176), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 80/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         L  DK+ +   +   GVP  P    
Sbjct: 79  AIHPGYGFLSENADFAEQVERSGFIFVGPRAETIRLMGDKVSAINAMKKAGVPCVPGSDG 138

Query: 112 LVNRFTMDSQH---LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
            ++     ++     I  P +IK   GG   G+ V++ +  +   +     ++    + D
Sbjct: 139 PLDGDEAKNKAHAKRIGYPVIIKASGGGGGRGMRVVRSEAELITAINMTRAEAKGAFNND 198

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E++++    +   V+ D   +   +            K          PA  I  +
Sbjct: 199 MVYMEKFLENPRHIEVQVLADGQGNAIHLGERDCSMQRRHQK-----VVEEAPAPGINEE 253

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + K +      A   IG RG    +FL+   + + +++E+N 
Sbjct: 254 VRKYIGERCTRACIEIGYRGAGTFEFLY--ENGEFYFIEMNT 293


>gi|194390906|dbj|BAG60571.1| unnamed protein product [Homo sapiens]
          Length = 681

 Score = 72.1 bits (176), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 75/220 (34%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      L   ++ +      A     DK+ SK +     V   P    
Sbjct: 138 AVHPGYGFLSENKEFARCLAAEDVVFIGPDTHAIQAMGDKIESKLLAKKAEVNTIPGFDG 197

Query: 112 LVNRFTMDS--QHLISPPYVIKPLKGGSSLGIIVIKKDQS----IPLDLLQSSSWNHGDQ 165
           +V            I  P +IK   GG   G+ +   D+       L   +++S    D+
Sbjct: 198 VVKDAEEAVRIAREIGYPVMIKASAGGGGKGMRIAWDDEETRDGFRLSSQEAASSFGDDR 257

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           LLIE+++D    +   V+GD   +   +   +        K             +  +  
Sbjct: 258 LLIEKFIDNPRHIEIQVLGDKHGNALWLNERECSIQRRNQK----VVEEAPSIFLDAETR 313

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +   A    +A+        +FL D      ++LE+N 
Sbjct: 314 RAMGEQAVALARAVKYSSAGTVEFLVDSKKN-FYFLEMNT 352


>gi|322412585|gb|EFY03493.1| acetyl-CoA carboxylase biotin carboxylase subunit [Streptococcus
           dysgalactiae subsp. dysgalactiae ATCC 27957]
          Length = 454

 Score = 72.1 bits (176), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 78/220 (35%), Gaps = 16/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  FG   E+     + E + I +            DK+ ++  +   GVPV P    
Sbjct: 77  AIHPGFGFLSENSKFTTMCEEMNIKFIGPSASVMDKMGDKINARTEMIKAGVPVIPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG----DQ 165
            +   +  +   + I  P ++K   GG   GI  ++ +  +      +S    G      
Sbjct: 137 EVYNAQEALAIANKIGYPVMLKASAGGGGKGIRKVETEADLEAAFNAASQEALGAFGNGA 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+ +     +   ++GDA   +  +            K             I   + 
Sbjct: 197 MYLEKVIYPARHIEVQILGDAHGTIIHLGERDCSLQRNNQKVL----EESPSIAIGNTLR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +E+   A  A +A+        +FL D  S + +++E+N 
Sbjct: 253 QEMGEAAVRAAKAVAYENAGTIEFLLDEDSGEFYFMEMNT 292


>gi|309789977|ref|ZP_07684553.1| biotin carboxylation domain-containing protein [Oscillochloris
           trichoides DG6]
 gi|308227997|gb|EFO81649.1| biotin carboxylation domain-containing protein [Oscillochloris
           trichoides DG6]
          Length = 493

 Score = 72.1 bits (176), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 31/221 (14%), Positives = 72/221 (32%), Gaps = 21/221 (9%)

Query: 57  VLHGNFG----EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--S 110
            +H  +G      G V+A  E + I     G        +K+ + + V + G+P     S
Sbjct: 74  AIHPGYGIISEHPGFVRA-CEEIGITVIGPGSATLEQVRNKIDTLEKVRAAGIPTTRPSS 132

Query: 111 ILVNRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNH 162
              +    ++       I  P V+K   GG   G  ++   + +   +      + ++  
Sbjct: 133 RAFSPSESEAMFAEAEAIGFPLVVKAHAGGHGRGTHLVYNREMLLNVVQRSSGAAQAFYG 192

Query: 163 GDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL 221
              + +E  +     +   V+GD    +  +            K    +        +  
Sbjct: 193 DAHVYLEAAMPASRYIEVPVLGDTHGTIVHLGERDGSIQRNTRKVIGES----PAPGLSQ 248

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
           +  + +   A          G++  +F+ D   +  ++ EI
Sbjct: 249 EQREAIWASALKVAHLFNIHGVATIEFVVDQAGQH-YFTEI 288


>gi|197104744|ref|YP_002130121.1| propionyl-CoA carboxylase, alpha subunit [Phenylobacterium zucineum
           HLK1]
 gi|196478164|gb|ACG77692.1| propionyl-CoA carboxylase, alpha subunit [Phenylobacterium zucineum
           HLK1]
          Length = 657

 Score = 72.1 bits (176), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 43/220 (19%), Positives = 73/220 (33%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H  FG   E+      L    I +      A     DK+ SK+  +  GV   P  + 
Sbjct: 77  AVHPGFGFLSENASFARRLAAENIVFIGPNPQAIEAMGDKIESKKFAAKAGVSTVPGHVG 136

Query: 113 ---VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS----IPLDLLQSSSWNHGDQ 165
                   +     I  P +IK   GG   GI V    Q      P    ++ +    D+
Sbjct: 137 EIDDTGHAIRISEEIGYPVMIKASAGGGGKGIRVAWSRQDVEEGFPAVRAEAKASFGDDR 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE++++    +   V+GD   +V  +   +        K             +     
Sbjct: 197 IFIEKFIESPRHVEIQVLGDKHGNVVHLFERECSIQRRNQK----VVEEAPSPLLDEKTR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K +   A    +A+G       +F      R  F+LE+N 
Sbjct: 253 KAMGDQAVALAKAVGYDSAGTVEF-VAGQDRSFFFLEMNT 291


>gi|169826972|ref|YP_001697130.1| pyruvate carboxylase [Lysinibacillus sphaericus C3-41]
 gi|168991460|gb|ACA39000.1| Pyruvate carboxylase [Lysinibacillus sphaericus C3-41]
          Length = 1144

 Score = 72.1 bits (176), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 34/243 (13%), Positives = 85/243 (34%), Gaps = 21/243 (8%)

Query: 35  QIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSM 91
            ID    +  ++A  K D   + +H  +G   E+       E   I +         +  
Sbjct: 59  PIDAYLDIEGIIAIAK-DADVDAIHPGYGFLSENVEFARRCEEEGIIFIGPTSEHLDMFG 117

Query: 92  DKMRSKQVVSSCGVPVCPSI---LVNRFTMDS-QHLISPPYVIKPLKGGSSLGIIVIKKD 147
           DK++++    +  +PV P     + N   +++       P +IK   GG   G+ ++   
Sbjct: 118 DKVKARLQAIAADIPVIPGTDGPVANLAEVEAFASTFGYPIMIKAALGGGGRGMRLVHAA 177

Query: 148 QSIPLDLL----QSSSWNHGDQLLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSY 202
           + +         ++ +    D++ +E+  +    +   ++GD   ++  +          
Sbjct: 178 EELASAYERAKSEAKAAFGSDEVYVEKAIIKPKHIEVQIIGDQQGNIVHLYERDCSIQRR 237

Query: 203 ELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
             K        + P+  I  ++   +   A    + +        +FL        +++E
Sbjct: 238 HQK-----VVEIAPSNSISEELRNRICAAAVKIMKNVSYINAGTVEFLV--AGDDFYFIE 290

Query: 262 INV 264
           +N 
Sbjct: 291 VNP 293


>gi|114650512|ref|XP_001149000.1| PREDICTED: propionyl-CoA carboxylase alpha chain, mitochondrial
           isoform 9 [Pan troglodytes]
          Length = 728

 Score = 72.1 bits (176), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 75/220 (34%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      L   ++ +      A     DK+ SK +     V   P    
Sbjct: 138 AVHPGYGFLSENKEFARCLAAEDVVFIGPDTHAIQAMGDKIESKLLAKKAEVNTIPGFDG 197

Query: 112 LVNRFTMDS--QHLISPPYVIKPLKGGSSLGIIVIKKDQS----IPLDLLQSSSWNHGDQ 165
           +V            I  P +IK   GG   G+ +   D+       L   +++S    D+
Sbjct: 198 VVKDAEEAVRIAREIGYPVMIKASAGGGGKGMRIAWDDEETRDGFRLSSQEAASSFGDDR 257

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           LLIE+++D    +   V+GD   +   +   +        K             +  +  
Sbjct: 258 LLIEKFIDNPRHIEIQVLGDKHGNALWLNERECSIQRRNQK----VVEEAPSIFLDAETR 313

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +   A    +A+        +FL D      ++LE+N 
Sbjct: 314 RAMGEQAVALARAVKYSSAGTVEFLVDSKKN-FYFLEMNT 352


>gi|302336069|ref|YP_003801276.1| ATP-grasp protein-like protein [Olsenella uli DSM 7084]
 gi|301319909|gb|ADK68396.1| ATP-grasp protein-like protein [Olsenella uli DSM 7084]
          Length = 422

 Score = 72.1 bits (176), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 47/305 (15%), Positives = 103/305 (33%), Gaps = 60/305 (19%)

Query: 31  FKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLE--------IPY-TH 81
           + V  I++       +A  +  + F V+ G   ED ++   L  L         +P+   
Sbjct: 37  YHVKPIELGADDIKSIARSRF-VDFRVVPGIDRED-VLMGYLTRLGAELVSAGKVPFLVG 94

Query: 82  SG-ILASALSMDKMR-----------------------SKQVVSSCGVPVCPSILVNRFT 117
            G   A  +S +K                           ++    G+P   +  ++   
Sbjct: 95  CGDFYARIVSKNKPVLEEWYYVPYIDFDLLDDITQKENFYRIADEVGIPYPKTRFLDCAD 154

Query: 118 MDSQ---HLISPPYVIKPLKGGS--------SLGIIVIKKDQSIPLDLLQSSSWNHGDQL 166
             +       S P V KP    +           +  ++    +        + ++   L
Sbjct: 155 PHAAVDDSGFSYPLVAKPSNSAAYHYAEIPDKKKVFFVQDRSELEGIFRSLQASSYDKSL 214

Query: 167 LIEQYVDGIELTCGVMG---DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           ++++ + G +    ++    DA+ D   +   +     +        +    PA I  + 
Sbjct: 215 IVQELIPGEDSQERILSIYTDANSDPVFMVGGRVVLQDHAP------TAIGNPAVIIPET 268

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283
            ++V   A    + +G  G++  D  +D       + EIN +PG    S+FP +A   G 
Sbjct: 269 NRKVLEDACRFMRRVGYHGMANFDVKYDARDDSFKFFEINTRPG--RSSLFPYLA---GV 323

Query: 284 SFREL 288
           +F ++
Sbjct: 324 NFAKV 328


>gi|299066488|emb|CBJ37678.1| Carbamoyl-phosphate synthase large chain (Carbamoyl-phosphate
           synthetase ammonia chain) [Ralstonia solanacearum CMR15]
          Length = 1081

 Score = 72.1 bits (176), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 31/222 (13%), Positives = 82/222 (36%), Gaps = 12/222 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQHLISPPYV 129
           LE   +P   +       + D+ R ++++   G+   P+         +     I  P V
Sbjct: 658 LEANGVPIIGTTPDMIDAAEDRERFQKLLHDLGLRQPPNRTARAEDEALKLADEIGYPLV 717

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++ + + +   + ++   ++   +L+++++ D IE     + D    
Sbjct: 718 VRPSYVLGGRAMEIVHEPRDLERYMREAVKVSNDSPVLLDRFLNDAIECDVDCLSDGKRV 777

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                +   +       +S  ++  + P  +      E++R      +A+   G+    F
Sbjct: 778 FIGGVMEHIEQAGV---HSGDSACSLPPYSLSQATVDELKRQTAAMARALNVIGLMNVQF 834

Query: 249 LFDPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
                  +  V+ LE+N +   T     P ++   G S  ++
Sbjct: 835 AIQQRGGEDIVYVLEVNPRASRT----VPYVSKATGISLAKV 872



 Score = 65.1 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 50/285 (17%), Positives = 98/285 (34%), Gaps = 42/285 (14%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + GFKV  +              DV          V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGFKVVLVNSNPATIMTDPSTADVTYIEPITWEVVERIIAKERPDAILP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G    +  +      +LE   +    +   A   + D+ + K+ ++  G+    S  
Sbjct: 89  TMGGQTALNCALDLHRHGVLEKYNVELIGASPEAIDKAEDRQKFKEAMTKIGLGSAKSGI 148

Query: 111 -------ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
                  + V        +    P VI+P       G  +    +       +    +  
Sbjct: 149 AHSLEEALAVQAQIARETNTGGYPIVIRPSFTLGGTGGGIAYNREEFEEICKRGLDLSPT 208

Query: 164 DQLLIEQYVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IP 220
           ++LLIE+ + G  E    V+ D + + +   ++   D           +S  V PA+ + 
Sbjct: 209 NELLIEESLLGWKEYEMEVVRDKADNCIIVCSIENLDPMGIHT----GDSITVAPAQTLT 264

Query: 221 LDIYKEVQRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
              Y+ ++  +    + IG   G S   F  +P   ++  +E+N 
Sbjct: 265 DKEYQILRNASLAVLREIGVDTGGSNVQFSINPEDGRMIVIEMNP 309


>gi|294617720|ref|ZP_06697343.1| phosphoribosylaminoimidazole carboxylase, ATPase subunit
           [Enterococcus faecium E1679]
 gi|291596031|gb|EFF27301.1| phosphoribosylaminoimidazole carboxylase, ATPase subunit
           [Enterococcus faecium E1679]
          Length = 374

 Score = 72.1 bits (176), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 36/207 (17%), Positives = 84/207 (40%), Gaps = 15/207 (7%)

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTMDSQ 121
           E+  V+A+  +L + +   G    A++ D++  K  + +  + + P   +       D+ 
Sbjct: 78  ENVSVEALNAILPMSFIPQGTDLLAITQDRLLEKSFLETNNIVIAPYATIVSPTDIQDAI 137

Query: 122 HLISPPYVIKPLKGG-SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTC 179
             I  P V+K  +GG    G  V+K    +   +            ++E ++    E++ 
Sbjct: 138 DGIGYPCVLKTTRGGYDGKGQYVLKSRADLAPAMDL----LREGTCVLEAWIPFEKEISI 193

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
            V G+   D     V ++        ++++    + PA I  D+ +E +R+A +  +A+ 
Sbjct: 194 MVAGNGQGDFMTFPVVENIH------HNNILHETIAPAAIDQDVIEEAERIARVIAEAVS 247

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQP 266
             G+   +         ++  E+  +P
Sbjct: 248 LSGVLGVEMFLTKTGG-LYVNELAPRP 273


>gi|121700879|ref|XP_001268704.1| urea amidolyase, putative [Aspergillus clavatus NRRL 1]
 gi|119396847|gb|EAW07278.1| urea amidolyase, putative [Aspergillus clavatus NRRL 1]
          Length = 1250

 Score = 72.1 bits (176), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 33/276 (11%), Positives = 81/276 (29%), Gaps = 33/276 (11%)

Query: 39  DRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQ 98
              +  V    K D      +G   E+      +    + +      +      K  ++ 
Sbjct: 64  GEQIIQVATQHKVDAIIPG-YGFLSENADFARAVATAGMVFVGPSPESIEAFGLKHTARD 122

Query: 99  VVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154
           + +  G P+ P     +      +     +  P ++K   GG  +G++    +  +    
Sbjct: 123 LATKAGAPIVPGSPGLVKSEEEAVTLAKALGFPVMLKATAGGGGMGLLTCSSEAEVRKAF 182

Query: 155 LQ-----SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209
                   + + +    +   Y     +   V G+ +     I   +        K    
Sbjct: 183 ATVKSRGEALFKNAGLFIERYYPSSHHIEVQVFGNGNGKAIYIGERECSIQRRHQK---- 238

Query: 210 NSTHVLPAKI---PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
                 P+ +      + K +   A    ++I        ++L D  +   F+LE+N   
Sbjct: 239 -VIEECPSPLVSRNPGLRKALGEAAVRLAESINYGSAGTIEYLVDDETGAFFFLEMNT-- 295

Query: 267 GMTPVSIFPEMAAYAGYS---FR-ELLLWMVEDASC 298
                     +    G +   +  +L+  M++ A  
Sbjct: 296 ---------RLQVEHGITELCYGLDLVELMLKQADA 322


>gi|218289640|ref|ZP_03493860.1| acetyl-CoA carboxylase, biotin carboxylase [Alicyclobacillus
           acidocaldarius LAA1]
 gi|218240290|gb|EED07473.1| acetyl-CoA carboxylase, biotin carboxylase [Alicyclobacillus
           acidocaldarius LAA1]
          Length = 447

 Score = 72.1 bits (176), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 77/220 (35%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+       E   I +      A  L  DK  +K  +   GVP  P    
Sbjct: 77  AVHPGYGFLSENSDFAEACEACGITFIGPSPRAIELMGDKSTAKMTMRRAGVPTVPGSEG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
            +      +   + I  P +IK   GG   GI V++ +  +         ++ +      
Sbjct: 137 LVESLEEALAIANAIGYPLIIKATAGGGGRGIRVVRDEPELRKAYDAARREAEASFGNPG 196

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+Y++    +   ++ D   +V  +            K             +  +  
Sbjct: 197 IYIEKYIERMRHVEIQILADRHGNVIHLGERDCSVQRRLQK----LVEESPCPVMTEEKR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +E+   A  A +A+   G    +F++ P     +++E+N 
Sbjct: 253 QEMGEAAVRAARAVDYVGAGTVEFIYTP-DGDFYFMEMNT 291


>gi|220904820|ref|YP_002480132.1| pyruvate carboxylase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
 gi|219869119|gb|ACL49454.1| Carbamoyl-phosphate synthase L chain ATP-binding [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
          Length = 1233

 Score = 72.1 bits (176), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 39/224 (17%), Positives = 87/224 (38%), Gaps = 26/224 (11%)

Query: 58  LHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
           +H  +G   ED    A  +   I +  +   A  L  +K+++++V    G+PV P    +
Sbjct: 90  IHPGWGFASEDTRFPARCKEAGITFIGATAEAMNLLGNKVQAREVARKLGIPVVPG---S 146

Query: 115 RFTMDSQHL------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GD 164
              +D          I  P ++K   GG   GI  I  +  +     ++S+         
Sbjct: 147 DGAVDIPTARQLISEIGLPIMLKAEGGGGGRGIFAIHNEAELEDAFFKASTMAQASFGNP 206

Query: 165 QLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP---AKIP 220
           +L +E+++ D   +   V+ D   +V        D     ++ +      + P     + 
Sbjct: 207 RLFVEKFLADVRHIEIQVIADMYGNVFAF-----DERDCTVQRNHQKLIEITPSPWPGMT 261

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            ++ + ++  +    +A+G   ++  +FL  P     + +E+N 
Sbjct: 262 RNLRERLKDYSRRLVRAVGYHSLATVEFLVTP-DGTPYLIEVNT 304


>gi|157736312|ref|YP_001488995.1| biotin carboxylase [Arcobacter butzleri RM4018]
 gi|315635444|ref|ZP_07890710.1| acetyl-CoA carboxylase, biotin carboxylase [Arcobacter butzleri
           JV22]
 gi|157698166|gb|ABV66326.1| acetyl CoA carboxylase, biotin carboxylase subunit [Arcobacter
           butzleri RM4018]
 gi|315480202|gb|EFU70869.1| acetyl-CoA carboxylase, biotin carboxylase [Arcobacter butzleri
           JV22]
          Length = 450

 Score = 72.1 bits (176), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 41/225 (18%), Positives = 84/225 (37%), Gaps = 17/225 (7%)

Query: 50  KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109
             D  F   +G   E+     I +L  I +    +       DK ++K+ +   GVPV P
Sbjct: 76  GCDAIFPG-YGFLSENQDFVEICKLHNIKFIGPSVEVMEKMADKSKAKEEMIKAGVPVVP 134

Query: 110 ----SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH--- 162
               S+            I  P + K   GG   G+ +IK ++    + + ++S      
Sbjct: 135 GSKGSVKTLEEGRTIAREIGYPIMAKAAAGGGGRGMRLIKTEEEFDQNFMAAASEALAAF 194

Query: 163 -GDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KI 219
               + +E+++ +   +   V+GD+  +   I           L+          PA  +
Sbjct: 195 GDGTMYLERFINNPRHIEVQVVGDSHGNAIHIGE-----RDCSLQRRHQKVIEESPAILL 249

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +   ++  +A  A + +   G    +FL D     ++++E+N 
Sbjct: 250 NDETRAKLHEVAVKATKYLKYEGAGTFEFLADDKQN-IYFMEMNT 293


>gi|149182327|ref|ZP_01860805.1| carbamoyl-phosphate synthase large subunit [Bacillus sp. SG-1]
 gi|148849946|gb|EDL64118.1| carbamoyl-phosphate synthase large subunit [Bacillus sp. SG-1]
          Length = 906

 Score = 72.1 bits (176), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 49/297 (16%), Positives = 113/297 (38%), Gaps = 36/297 (12%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL++ G+KV  ++ +                       V  ++   +PD     L G  G
Sbjct: 36  ALKEEGYKVILVNSNPATIMTDSEIADKVYIEPITLEFVSRIIRKERPDALLPTLGGQTG 95

Query: 64  EDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
            +  V+     +L+   +    + + A   + D+   +++++    PV  S ++      
Sbjct: 96  LNMAVELANAGVLDECNVEILGTKLSAIEQAEDRDLFRKLMNELNEPVPKSEIIRSVDEA 155

Query: 120 SQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IE 176
            Q    +  P +++P       G  +    + +   +     ++   Q L+E+ + G  E
Sbjct: 156 FQFVEEVGYPVIVRPAYTLGGTGGGICHNREELIEIVSSGLKYSPVTQCLLEKSIAGFKE 215

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAH 235
           +   VM D++     I V   + +   +   + +S  V P++ +    Y+ ++  +    
Sbjct: 216 IEYEVMRDSNDSA--IVVCNMENFD-PVGIHTGDSIVVAPSQTLSDREYQMLRNCSLKII 272

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +A+G  G        DP S + + +E+N  P ++  S     +   GY   +L   +
Sbjct: 273 RALGIEGGCNVQLALDPDSFQYYIIEVN--PRVSRSS--ALASKATGYPIAKLAAKI 325



 Score = 64.4 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/220 (11%), Positives = 76/220 (34%), Gaps = 11/220 (5%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTMDSQHLISPPYVIKPL 133
            +    + +     + ++ + +  + S G+P       +     ++    I  P +++P 
Sbjct: 650 GVRILGTSLEDLDRAENRDKFEYTLQSLGIPQPEGKTAVTVEGAVEIADSIGYPVLVRPS 709

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
                  + ++ +   +   +  +   N    +LI++Y+ G E+    + D    V    
Sbjct: 710 YVLGGRAMEIVYEQSELLQYMKNAVKVNPEHPVLIDRYLIGKEIEVDAISDGKGVVIPGI 769

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
           +   +       +S  +     P ++  D  + +        + +   G+    ++    
Sbjct: 770 MEHIERAGV---HSGDSIAVYPPQQLTRDQKERIIEYTTKLARGLNIIGLLNIQYVISK- 825

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
             +V+ LE+N +   T     P ++   G     L   ++
Sbjct: 826 -NEVYVLEVNPRSSRT----VPFLSKITGVPMANLATKVI 860


>gi|65506442|ref|NP_000273.2| propionyl-CoA carboxylase alpha chain, mitochondrial isoform a
           precursor [Homo sapiens]
 gi|308153661|sp|P05165|PCCA_HUMAN RecName: Full=Propionyl-CoA carboxylase alpha chain, mitochondrial;
           Short=PCCase subunit alpha; AltName:
           Full=Propanoyl-CoA:carbon dioxide ligase subunit alpha;
           Flags: Precursor
 gi|18252315|gb|AAL66189.1|AF385926_1 propionyl-CoA carboxylase alpha subunit [Homo sapiens]
 gi|119629439|gb|EAX09034.1| propionyl Coenzyme A carboxylase, alpha polypeptide, isoform CRA_c
           [Homo sapiens]
 gi|122889297|emb|CAH70370.2| propionyl Coenzyme A carboxylase, alpha polypeptide [Homo sapiens]
 gi|122890711|emb|CAI39557.2| propionyl Coenzyme A carboxylase, alpha polypeptide [Homo sapiens]
 gi|123218103|emb|CAH72681.2| propionyl Coenzyme A carboxylase, alpha polypeptide [Homo sapiens]
 gi|123289714|emb|CAI40434.2| propionyl Coenzyme A carboxylase, alpha polypeptide [Homo sapiens]
          Length = 728

 Score = 72.1 bits (176), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 75/220 (34%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      L   ++ +      A     DK+ SK +     V   P    
Sbjct: 138 AVHPGYGFLSENKEFARCLAAEDVVFIGPDTHAIQAMGDKIESKLLAKKAEVNTIPGFDG 197

Query: 112 LVNRFTMDS--QHLISPPYVIKPLKGGSSLGIIVIKKDQS----IPLDLLQSSSWNHGDQ 165
           +V            I  P +IK   GG   G+ +   D+       L   +++S    D+
Sbjct: 198 VVKDAEEAVRIAREIGYPVMIKASAGGGGKGMRIAWDDEETRDGFRLSSQEAASSFGDDR 257

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           LLIE+++D    +   V+GD   +   +   +        K             +  +  
Sbjct: 258 LLIEKFIDNPRHIEIQVLGDKHGNALWLNERECSIQRRNQK----VVEEAPSIFLDAETR 313

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +   A    +A+        +FL D      ++LE+N 
Sbjct: 314 RAMGEQAVALARAVKYSSAGTVEFLVDSKKN-FYFLEMNT 352


>gi|116049963|ref|YP_791227.1| alpha subunit of geranoyl-CoA carboxylase, GnyA [Pseudomonas
           aeruginosa UCBPP-PA14]
 gi|115585184|gb|ABJ11199.1| alpha subunit of geranoyl-CoA carboxylase, GnyA [Pseudomonas
           aeruginosa UCBPP-PA14]
          Length = 655

 Score = 72.1 bits (176), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 77/220 (35%), Gaps = 19/220 (8%)

Query: 58  LHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
           +H  +G   E+       E   + +      A      K  +K ++   GVP+ P     
Sbjct: 84  IHPGYGFLSENADFARACEEAGLLFLGPPAAAIDAMGSKSAAKALMEEAGVPLVPGYHGE 143

Query: 115 RFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGDQL 166
               +        I  P ++K   GG   G+ V++ +  +   L     ++ +     ++
Sbjct: 144 AQDAETFRREAGRIGYPVLLKAAAGGGGKGMKVVEHEAELAEALSSAQREAKAAFGDARM 203

Query: 167 LIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIY 224
           L+E+Y +    +   V  D       +            K          PA  +  ++ 
Sbjct: 204 LVEKYLLKPRHVEIQVFADRHGHCLYLNERDCSIQRRHQK-----VVEEAPAPGLGAELR 258

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +   A  A QAIG  G    +FL D    + F++E+N 
Sbjct: 259 RAMGEAAVRAAQAIGYVGAGTVEFLLDER-GQFFFMEMNT 297


>gi|330501714|ref|YP_004378583.1| acetyl-CoA carboxylase biotin carboxylase subunit [Pseudomonas
           mendocina NK-01]
 gi|328916000|gb|AEB56831.1| acetyl-CoA carboxylase biotin carboxylase subunit [Pseudomonas
           mendocina NK-01]
          Length = 451

 Score = 72.1 bits (176), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 37/217 (17%), Positives = 77/217 (35%), Gaps = 18/217 (8%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI--LVNRF 116
           +G   E+      +E     +         L  DK+ +K  +   GVPV P     +   
Sbjct: 84  YGFLAENADFAEQVENSGFAFIGPTASVIRLMGDKVSAKDAMIKSGVPVVPGSDGPLPED 143

Query: 117 TMDS---QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQLLIE 169
             ++      +  P +IK   GG   G+ V+ K++ +         ++ +      + +E
Sbjct: 144 EEEALRIAREVGYPVIIKAAGGGGGRGMRVVHKEEDLIKSAKLTRTEAGAAFGNPMVYLE 203

Query: 170 QYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEV 227
           +++ +   +   V+ D   +   +           L+          PA +       EV
Sbjct: 204 KFLGNPRHVEVQVLSDGQGNAIHLY-----DRDCSLQRRHQKVIEEAPAPLIDEKARAEV 258

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +    A   IG RG    +FL+     + +++E+N 
Sbjct: 259 LKRCVDACIEIGYRGAGTFEFLY--EDGRFYFIEMNT 293


>gi|149923959|ref|ZP_01912345.1| acetyl-CoA carboxylase, biotin carboxylase [Plesiocystis pacifica
           SIR-1]
 gi|149815191|gb|EDM74740.1| acetyl-CoA carboxylase, biotin carboxylase [Plesiocystis pacifica
           SIR-1]
          Length = 457

 Score = 72.1 bits (176), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 30/198 (15%), Positives = 69/198 (34%), Gaps = 16/198 (8%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD---SQHLISPPYVIKP 132
            + +            DK+ +++ +   GVPV     V     +   +   I  P ++K 
Sbjct: 101 GMTFIGPDPEHMRTMGDKVMARETMKKAGVPVLEGTTVLESGEEARAAAERIGLPVILKA 160

Query: 133 LKGGSSLGIIVIKKDQS----IPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASL 187
             GG   G+ ++         +     ++ +      +  E+Y+     +   ++ D   
Sbjct: 161 SAGGGGRGMKIVWDLDEVAPTLQTAQAEALAAFGCGDMYCERYITSPRHIEIQIVADQHG 220

Query: 188 DVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRS 246
           +V ++   +        K          PA      + +E+   A  A +AI    +   
Sbjct: 221 NVIDLLERECSVQRRHQK-----VIEEAPASNYSEKLRREMGEAAIAAARAINYNSLGTV 275

Query: 247 DFLFDPLSRKVFWLEINV 264
           +FL D    + +++E+N 
Sbjct: 276 EFLLD--GDRFYFMEMNT 291


>gi|145588397|ref|YP_001154994.1| acetyl-CoA carboxylase, biotin carboxylase [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
 gi|145046803|gb|ABP33430.1| acetyl-CoA carboxylase, biotin carboxylase [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
          Length = 454

 Score = 72.1 bits (176), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 35/222 (15%), Positives = 81/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      +E     +      +  L  DK+ +K+ +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAERVEKSGFAFIGPTAASIRLMGDKVSAKRAMIKAGVPCVPGSEG 136

Query: 114 -----NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
                 +  + +   +  P +IK   GG   G+ V+  + ++   +     ++       
Sbjct: 137 ALPDNPKEIIATAKKVGYPVIIKAAGGGGGRGMRVVHTEAALLNAVNMTKEEAGRAFGNP 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
           ++ +E++++    +   ++ D   +   +            K          PA  I   
Sbjct: 197 EVYMEKFLEKPRHVEIQILADTHGNAIWLGERDCSMQRRHQK-----VIEEAPAPGIDRR 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +  ++      A + IG RG    +FL+   + + F++E+N 
Sbjct: 252 LIAKIGERCAEACRKIGYRGAGTFEFLY--ENNEFFFIEMNT 291


>gi|330892511|gb|EGH25172.1| pyruvate carboxylase subunit A [Pseudomonas syringae pv. mori str.
           301020]
          Length = 434

 Score = 72.1 bits (176), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 77/220 (35%), Gaps = 20/220 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            LH  +G   E+  +  I     I +            DK  +++ +   GVPV P    
Sbjct: 76  ALHPGYGFLSENAELADICAERGIKFIGPSAEVIRRMGDKTEARRSMIKAGVPVTPGTEG 135

Query: 114 NRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGD 164
           N   +D        I  P ++K   GG   GI      + +           + ++   +
Sbjct: 136 NVADIDEALVEGERIGYPVMLKATSGGGGRGIRRCNSREELEQAFPRVISEATKAFGSAE 195

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDI 223
             L +  V+   +   ++GD+  +V  +            K        + P  ++  + 
Sbjct: 196 VFLEKCIVNPKHIEAQILGDSFGNVVHLFERDCSIQRRNQKL-----IEIAPSPQLTPEQ 250

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
              +  L+  A +A+G       +FL      +V+++E+N
Sbjct: 251 RAYIGDLSVRAAKAVGYENAGTVEFLL--AEGEVYFMEMN 288


>gi|325201499|gb|ADY96953.1| acetyl-CoA carboxylase, biotin carboxylase [Neisseria meningitidis
           M01-240149]
          Length = 453

 Score = 72.1 bits (176), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 81/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---S 110
            +H  +G   E+      +E     +         L  DK+ +K  + + GVP  P    
Sbjct: 77  AVHPGYGFLAENADFAEQVEQSGFTFIGPKPDTIRLMGDKVSAKHAMIAAGVPCVPGSDG 136

Query: 111 ILVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
            L +     +     +  P +IK   GG   G+ V++K + +   +     ++ +     
Sbjct: 137 ALPDDGEEILKIADKVGYPVIIKASGGGGGRGMRVVEKKEDLLQSVEMTKAEAGAAFGNP 196

Query: 165 QLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+Y+     +   V+ D   +   +A          L+          PA  I  +
Sbjct: 197 MVYMERYLQRPRHVEIQVIADEHGNAVYLAE-----RDCSLQRRHQKVIEEAPAPFITEE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              ++      A + IG RG    +FL+     + F++E+N 
Sbjct: 252 ERAKIGNACADACKRIGYRGAGTFEFLY--EDGEFFFIEMNT 291


>gi|145224777|ref|YP_001135455.1| pyruvate carboxylase [Mycobacterium gilvum PYR-GCK]
 gi|315445107|ref|YP_004077986.1| pyruvate carboxylase [Mycobacterium sp. Spyr1]
 gi|145217263|gb|ABP46667.1| pyruvate carboxylase [Mycobacterium gilvum PYR-GCK]
 gi|315263410|gb|ADU00152.1| pyruvate carboxylase [Mycobacterium sp. Spyr1]
          Length = 1148

 Score = 72.1 bits (176), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 41/247 (16%), Positives = 85/247 (34%), Gaps = 18/247 (7%)

Query: 28  DAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87
           D G  V        +  V      D  +   +G   E+  + A      I +        
Sbjct: 56  DVGHPVRAYLSVDEIMRVALDAGCDAVYPG-YGFLSENPELAAACASAGITFVGPSAHVL 114

Query: 88  ALSMDKMRSKQVVSSCGVPVC----PSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIV 143
            L+ +K R+     S G+PV     PS  V    +++   +  P  +K + GG   G+  
Sbjct: 115 ELTGNKARAIAAARSAGLPVLASSEPSASVEEL-VEAARTMEFPLFVKAVSGGGGRGMRR 173

Query: 144 IKKDQSIPLDLLQS-----SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD 198
           + + + +   +  +     S++      L +  ++   +   ++ D+  +V         
Sbjct: 174 VAEPEGLAEAVEAASREAESAFGDPSVYLEQAVLNPRHIEVQILADSRGNVM-----HLF 228

Query: 199 FYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
                ++        + PA  +P ++ +++   A    + IG       +FL D     V
Sbjct: 229 ERDCSVQRRHQKVIELAPAPNLPEELRQQICADAVAYAREIGYTCAGTVEFLLDERGHHV 288

Query: 258 FWLEINV 264
           F  E N 
Sbjct: 289 FI-ECNP 294


>gi|226288933|gb|EEH44445.1| acetyl-/propionyl-coenzyme A carboxylase alpha chain
           [Paracoccidioides brasiliensis Pb18]
          Length = 1244

 Score = 72.1 bits (176), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 27/218 (12%), Positives = 71/218 (32%), Gaps = 17/218 (7%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVN 114
           +G   E+     + +   I +      +      K R++++    GVP+ P     +   
Sbjct: 84  YGFLSENTDFARMAKEAGIAFAGPSPESIEAFGLKHRARELAIDAGVPIVPGTQSLVKDE 143

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-----SSSWNHGDQLLIE 169
              +++   +  P ++K   GG  +G++    ++ +            + + +G   +  
Sbjct: 144 EEAVNASKKLGFPVMLKATAGGGGMGLLTCHSEEEVRESFTTVKSRGEALFKNGGMFIER 203

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI---PLDIYKE 226
            Y     +   V G+           +        K          P+       ++ ++
Sbjct: 204 YYPSSHHIEVQVFGNGLGKAIHFGERECSIQRRHQK-----VVEECPSPFVTKHPELRQK 258

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +   A    ++         ++L D  +   F+LE+N 
Sbjct: 259 LCDAAVRLAESTKYASAGTIEYLVDDDTGDFFFLEMNT 296


>gi|229818278|ref|ZP_04448559.1| hypothetical protein BIFANG_03577 [Bifidobacterium angulatum DSM
           20098]
 gi|229784377|gb|EEP20491.1| hypothetical protein BIFANG_03577 [Bifidobacterium angulatum DSM
           20098]
          Length = 615

 Score = 72.1 bits (176), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 37/219 (16%), Positives = 73/219 (33%), Gaps = 15/219 (6%)

Query: 56  NVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
           N +H  +G   E     + +      +      A     DK+ +++V +   VP  P + 
Sbjct: 79  NAVHPGYGFLSEVPSFASKVAQSGAIWVGPSPEALIELGDKISARRVAARAKVPPVPGLS 138

Query: 113 VN----RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD--QL 166
                 R  +D  H    P ++K   GG   GI V+  D+ +        S   GD    
Sbjct: 139 EPVSSVRKLLDFAHTYGYPVMMKRTDGGGGHGITVVNDDEELRRFFASHDSLQGGDLNAY 198

Query: 167 LIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
            +E++V     +      D+  + T  +           K             +   +  
Sbjct: 199 FVEKFVRAARHVETQCGRDSHGNFTVYSTRDCSLQRRNQK----LVEEAPAPFLSDAVID 254

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +   +    + +   G+   +F+      KV++LE+N 
Sbjct: 255 TLGEYSRRLFETVDYVGLGTCEFMVTEQ-GKVYFLEVNP 292


>gi|254509950|ref|ZP_05122017.1| biotin carboxylase [Rhodobacteraceae bacterium KLH11]
 gi|221533661|gb|EEE36649.1| biotin carboxylase [Rhodobacteraceae bacterium KLH11]
          Length = 461

 Score = 72.1 bits (176), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 76/220 (34%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+      +    + +            DK  ++Q  +  GVP  P    
Sbjct: 78  AIHPGYGFLAENADFADAVVAAGLIFIGPDGNTIRKMGDKASARQAAADAGVPTVPGSDG 137

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGDQ 165
            +      +D  H I  P +IK   GG   GI +    +      P    ++ +      
Sbjct: 138 VLTDLGRAVDIAHQIGFPVMIKATAGGGGRGIRIAHTAEEFAQLAPQAATEAEAAFGDGG 197

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           L +E+ +     +   ++GD     T          S + +   +         +  +  
Sbjct: 198 LYLEKLIARSRHIEVQILGDG----TRFVHCHERECSLQRRRQKVW-EEAPATSLSDETR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            E+   A     ++G RG    +FL+D  S + +++E+N 
Sbjct: 253 AELCDAAVALAASVGYRGAGTVEFLYDEASGEFYFIEMNT 292


>gi|254427682|ref|ZP_05041389.1| acetyl-CoA carboxylase, biotin carboxylase [Alcanivorax sp. DG881]
 gi|196193851|gb|EDX88810.1| acetyl-CoA carboxylase, biotin carboxylase [Alcanivorax sp. DG881]
          Length = 448

 Score = 72.1 bits (176), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 37/217 (17%), Positives = 74/217 (34%), Gaps = 18/217 (8%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
           +G   E+      +E     +         L  +K+ + + +   GVP  P         
Sbjct: 82  YGFLAENADFAESVERSGFTFIGPKADTIRLMGNKVAAIEAMKKAGVPTVPGSDGPIGDD 141

Query: 119 DS-----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQLLIE 169
           D         I  P +IK   GG   G+ V+++ + +   +  + S          + +E
Sbjct: 142 DDASLAMAEQIGYPVIIKAAAGGGGRGMRVVEEAKHLLNAITLTRSEAKNAFGDATVYME 201

Query: 170 QYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
           +++     +   V+ D +                 L+          PA  IP  +  EV
Sbjct: 202 KFLQKPRHVEVQVLADGAGHAI-----HLGDRDCSLQRRHQKVVEEAPAPGIPQHLKDEV 256

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +    A + I  RG    +FL+     + +++E+N 
Sbjct: 257 AQRCVDACKTINYRGAGTFEFLY--EDERFYFIEMNT 291


>gi|163757959|ref|ZP_02165048.1| putative propionyl-CoA carboxylase alpha subunit [Hoeflea
           phototrophica DFL-43]
 gi|162285461|gb|EDQ35743.1| putative propionyl-CoA carboxylase alpha subunit [Hoeflea
           phototrophica DFL-43]
          Length = 668

 Score = 72.1 bits (176), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 76/221 (34%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E       LE   I +    + A     DK+ SK++ +  GV   P    
Sbjct: 77  AVHPGYGFLSERASFCDALEKEGIAFIGPKVKAIEAMGDKITSKKIAAEAGVSTVPGHMG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGD 164
            I            I  P +IK   GG   G+ +   D              +SS+   D
Sbjct: 137 LIDDEAHAAKIAAEIGYPVMIKASAGGGGKGMRIAWNDAEAREGFSRSKSEAASSFG-DD 195

Query: 165 QLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           ++ IE++V+    +   ++ D+  +   +   +        K             +    
Sbjct: 196 RIFIEKFVEEPRHIEIQLIADSHGNAIYLGERECSIQRRNQK----VVEEAPSPFLDEAT 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            K +   +    +A+  +     +F+ D   RK ++LE+N 
Sbjct: 252 RKAMGEQSVALAKAVDYQSAGTVEFIVDKH-RKFYFLEMNT 291


>gi|291616228|ref|YP_003518970.1| CarB [Pantoea ananatis LMG 20103]
 gi|291151258|gb|ADD75842.1| CarB [Pantoea ananatis LMG 20103]
          Length = 1090

 Score = 72.1 bits (176), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 44/278 (15%), Positives = 99/278 (35%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D +              V  ++   +PD    
Sbjct: 43  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 102

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +    Q +LE   +    +   A   + D+ R    + S G+    S +
Sbjct: 103 TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKSIGLDTARSGI 162

Query: 113 VNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     +     +  P +I+P       G  +    +       +    +  ++LLI++
Sbjct: 163 AHTMDEALAVAADVGFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTNELLIDE 222

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + +   +   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 223 SLIGWKEYEMEVVRDKNDNCIIVCSIEN----FDAMGIHTGDSITVAPAQTLTDKEYQIM 278

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 279 RNASLAVLREIGVETGGSNVQFAVNPKNGRLIVIEMNP 316



 Score = 60.1 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 74/197 (37%), Gaps = 10/197 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           LE   +P   +   A   + D+ R +Q V    +    +  V      ++    I  P V
Sbjct: 668 LEAAGVPVIGTSPDAIDRAEDRERFQQAVDRLNLKQPANATVATLEQAVEKAAGIGYPLV 727

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  +  +      + S ++   +L+++++ D +E+    + D    
Sbjct: 728 VRPSYVLGGRAMEIVYDEIDLKRYFQTAVSVSNDAPVLLDRFLDDAVEVDVDAICDGERV 787

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           +    +   +    +    S +S   LPA  +  DI   +++        +  RG+    
Sbjct: 788 LIGGIMEHIE----QAGVHSGDSACSLPAYTLSQDIQNVMRQQVEKLAFELNVRGLMNVQ 843

Query: 248 FLFDPLSRKVFWLEINV 264
           F       +V+ +E+N 
Sbjct: 844 FAV--KDNEVYLIEVNP 858


>gi|254476153|ref|ZP_05089539.1| carbamoyl-phosphate synthase, large subunit [Ruegeria sp. R11]
 gi|214030396|gb|EEB71231.1| carbamoyl-phosphate synthase, large subunit [Ruegeria sp. R11]
          Length = 1119

 Score = 72.1 bits (176), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 50/270 (18%), Positives = 101/270 (37%), Gaps = 34/270 (12%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAI---- 71
           AL DAG++   I         D D S  L    L  +    +L     E+G +  +    
Sbjct: 607 ALTDAGYETIMINCNPETVSTDYDTSDRLYFEPLTFEHVMEILT-TEQENGTLHGVIVQF 665

Query: 72  -----------LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTM 118
                      LE   IP   +   A  L+ D+ R + +V+  G+    + +   +   +
Sbjct: 666 GGQTPLKLANALEAEGIPILGTSPDAIDLAEDRERFQALVNQLGLKQPKNGIASTDAQAL 725

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           +    I  P VI+P        + +++    +   + ++   +    +L++ Y+ G    
Sbjct: 726 EIAGEIGFPLVIRPSYVLGGRAMEIVRDMDQLKRYIAEAVVVSGDSPVLLDSYLAG---A 782

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELK-YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
             +  DA  D TE+ V     +  E   +S  ++  + P  +  +I  E++       +A
Sbjct: 783 VELDVDAICDGTEVHVAGIMQHIEEAGVHSGDSACSLPPYSLSKEIIAEIKIQTEALAKA 842

Query: 238 IGCRGISRSDFLF---DPLSRKVFWLEINV 264
           +   G+    F     D    ++F +E+N 
Sbjct: 843 LNVVGLMNIQFAIKANDEGKDEIFLIEVNP 872



 Score = 51.7 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 43/291 (14%), Positives = 97/291 (33%), Gaps = 48/291 (16%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D                V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPGLADATYIEPITPEVVAKIIEKERPDALLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G  G +  +      +LE  ++    +   A  ++ D+   ++ +   G+    + +
Sbjct: 89  TMGGQTGLNTALALEEMGVLEKFDVEMIGAKREAIEMAEDRKLFREAMDRLGLENPRATI 148

Query: 113 VN---------------RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
           +                +  +D    I  P +I+P       G  V    +         
Sbjct: 149 ITAPNKADGSADLDAGVQMALDELEDIGLPAIIRPAFTLGGTGGGVAYNREDYIHYCRSG 208

Query: 158 SSWNHGDQLLIEQYVDG-IELTCGVMGDASL-DVTEIAVPKSDFYSYELKYSSLNSTHVL 215
              +  +Q+L+++ + G  E    V+ D +   +   ++   D           +S  V 
Sbjct: 209 MDASPVNQILVDESLLGWKEYEMEVVRDTADNAIIVCSIENVDPMGVHT----GDSITVA 264

Query: 216 PA-KIPLDIYKEVQRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           PA  +    Y+ ++  +    + IG   G S   +  +P   ++  +E+N 
Sbjct: 265 PALTLTDKEYQMMRSASIAVLREIGVETGGSNVQWAVNPADGRMVVIEMNP 315


>gi|171184739|ref|YP_001793658.1| lysine biosynthesis enzyme LysX [Thermoproteus neutrophilus V24Sta]
 gi|170933951|gb|ACB39212.1| lysine biosynthesis enzyme LysX [Thermoproteus neutrophilus V24Sta]
          Length = 283

 Score = 72.1 bits (176), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 35/190 (18%), Positives = 71/190 (37%), Gaps = 18/190 (9%)

Query: 82  SGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSL 139
           +   +  LS DK  +   +   GVP   + L         +   +S P ++KP  G    
Sbjct: 80  NSAQSLVLSHDKYLTYLRLREYGVPTPRTYLAFGLEAARAAAEKLSYPVIVKPTDGSWGR 139

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQL-LIEQYVD--GIELTCGVMGDASLDVTEIAVPK 196
            + ++K  + +   ++   +      + L+++YV+  G ++   V+GD ++         
Sbjct: 140 YVSMVKSAEDLETVVMHRQAMESDLHIYLVQEYVEKPGRDIRVTVVGDRAVAAIYRIASA 199

Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256
                +    +        P KI  ++ +    +A  A +A+G    S  D       R 
Sbjct: 200 ----DWRTNTARGGRAE--PVKIDPELEE----VAVRASKAVG-TYYSGVD--VVETPRG 246

Query: 257 VFWLEINVQP 266
              LE+N  P
Sbjct: 247 YLVLEVNGVP 256


>gi|332798387|ref|YP_004459886.1| phosphoribosylaminoimidazole carboxylase, ATPase subunit
           [Tepidanaerobacter sp. Re1]
 gi|332696122|gb|AEE90579.1| phosphoribosylaminoimidazole carboxylase, ATPase subunit
           [Tepidanaerobacter sp. Re1]
          Length = 380

 Score = 72.1 bits (176), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 47/188 (25%), Positives = 72/188 (38%), Gaps = 13/188 (6%)

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGG-SS 138
                    +  DK + KQ++   G+P    ++VN    D+      P V K  KGG   
Sbjct: 93  IFPSPHVLEIIQDKSKQKQMLDKNGIPTARWVMVNDDLSDAIENFGLPAVQKACKGGYDG 152

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD 198
            G+ VI+K + I   L         D  L E      EL   V  + + ++    V +  
Sbjct: 153 RGVYVIEKPEDISNALK-------CDSFLEELIPIEKELAVMVARNTNKEIKCYPVVEMT 205

Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
           F   +      N+  V PA+I   I K+   LA    +A+   GI   +    P  +KV 
Sbjct: 206 FD--QRANICDNT--VAPARIEESIKKQALDLAMRCVEALDGVGIFGIEMFLTP-DKKVL 260

Query: 259 WLEINVQP 266
             EI  +P
Sbjct: 261 VNEIAPRP 268


>gi|186472402|ref|YP_001859744.1| carbamoyl-phosphate synthase L chain ATP-binding [Burkholderia
           phymatum STM815]
 gi|184194734|gb|ACC72698.1| Carbamoyl-phosphate synthase L chain ATP-binding [Burkholderia
           phymatum STM815]
          Length = 670

 Score = 72.1 bits (176), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 82/221 (37%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       E   I +    + A A    K  +K ++ S  VP+ P    
Sbjct: 77  AVHPGYGFLSENEDFAHACEKAGIAFIGPPVEAIAAMGSKAAAKALMHSAAVPLVPGYHG 136

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
           +  + D        I+ P ++K   GG   G+ V+++ +     L     +++S    D+
Sbjct: 137 DDQSADLLHRQADQIAYPVLLKASAGGGGKGMRVVERTEDFAAALASCKREAASSFGNDR 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           +LIE+Y+     +   V  D       +           ++          PA  +   +
Sbjct: 197 VLIEKYLTRPRHVEVQVFADKHGGAVYL-----FDRDCSVQRRHQKVLEEAPAPGLQPHV 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +   A  A +A+   G    +F+      + +++E+N 
Sbjct: 252 RRAMGEAAVAAARAVNYVGAGTVEFIMTE-GGEFYFMEMNT 291


>gi|114650524|ref|XP_001148773.1| PREDICTED: propionyl-Coenzyme A carboxylase, alpha polypeptide
           isoform 6 [Pan troglodytes]
          Length = 663

 Score = 72.1 bits (176), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 75/220 (34%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      L   ++ +      A     DK+ SK +     V   P    
Sbjct: 73  AVHPGYGFLSENKEFARCLAAEDVVFIGPDTHAIQAMGDKIESKLLAKKAEVNTIPGFDG 132

Query: 112 LVNRFTMDS--QHLISPPYVIKPLKGGSSLGIIVIKKDQS----IPLDLLQSSSWNHGDQ 165
           +V            I  P +IK   GG   G+ +   D+       L   +++S    D+
Sbjct: 133 VVKDAEEAVRIAREIGYPVMIKASAGGGGKGMRIAWDDEETRDGFRLSSQEAASSFGDDR 192

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           LLIE+++D    +   V+GD   +   +   +        K             +  +  
Sbjct: 193 LLIEKFIDNPRHIEIQVLGDKHGNALWLNERECSIQRRNQK----VVEEAPSIFLDAETR 248

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +   A    +A+        +FL D      ++LE+N 
Sbjct: 249 RAMGEQAVALARAVKYSSAGTVEFLVDSKKN-FYFLEMNT 287


>gi|156935775|ref|YP_001439691.1| acetyl-CoA carboxylase biotin carboxylase subunit [Cronobacter
           sakazakii ATCC BAA-894]
 gi|156534029|gb|ABU78855.1| hypothetical protein ESA_03645 [Cronobacter sakazakii ATCC BAA-894]
          Length = 449

 Score = 72.1 bits (176), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 42/222 (18%), Positives = 82/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         L  DK+ +   +   GVP  P    
Sbjct: 77  AIHPGYGFLSENANFAEQVEQSGFIFIGPKADTIRLMGDKVSAITAMKKAGVPTVPGSDG 136

Query: 112 -LVNRFTMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
            L +    +  H   I  P +IK   GG   G+ V++ D  +   +     ++ +  + D
Sbjct: 137 PLGDDMDKNRAHAKRIGYPVIIKASGGGGGRGMRVVRSDAELAQSISMTKAEAKAAFNND 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+Y++    +   V+ D   +   +A           K          PA  I  +
Sbjct: 197 MVYMEKYLENPRHIEIQVLADGQGNAIYLAERDCSMQRRHQK-----VVEEAPAPGITPE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + + +      A   IG RG    +FLF   + + +++E+N 
Sbjct: 252 LRRYIGERCAKACVDIGYRGAGTFEFLF--ENGEFYFIEMNT 291


>gi|221065163|ref|ZP_03541268.1| acetyl-CoA carboxylase, biotin carboxylase [Comamonas testosteroni
           KF-1]
 gi|220710186|gb|EED65554.1| acetyl-CoA carboxylase, biotin carboxylase [Comamonas testosteroni
           KF-1]
          Length = 452

 Score = 72.1 bits (176), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 40/226 (17%), Positives = 81/226 (35%), Gaps = 29/226 (12%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+      +E     +            DK+ +KQ +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAERVEKSGFTFIGPTPENIRTMGDKVSAKQAMIKAGVPCVPGSDG 136

Query: 111 ------ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSW 160
                  L+ R        I  P +IK   GG   G+ V+  + ++   +     ++ + 
Sbjct: 137 ELPDDPALIKR----IAKTIGYPVIIKASGGGGGRGMRVVHTEAALINAVQMTKAEAGAA 192

Query: 161 NHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK- 218
                + +E+Y+ +   +   V+ D   +   +            K          PA  
Sbjct: 193 FGNPAVYMEKYLQNPRHVEIQVLADTHKNAVYLGERDCSMQRRHQK-----VIEEAPAPG 247

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           IP  + +++      A + IG RG    +FL+   + + +++E+N 
Sbjct: 248 IPRRLIEKIGERCAAACKKIGYRGAGTFEFLY--ENGEFYFIEMNT 291


>gi|124008606|ref|ZP_01693297.1| pyruvate carboxylase [Microscilla marina ATCC 23134]
 gi|123985850|gb|EAY25714.1| pyruvate carboxylase [Microscilla marina ATCC 23134]
          Length = 1156

 Score = 72.1 bits (176), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 33/222 (14%), Positives = 75/222 (33%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+           I +            DK+ +K +     VPV      
Sbjct: 84  AIHPGYGFLSENVNFARRCREEGIIFVGPTPEVMENLGDKVSAKLIAKKANVPVINDSQQ 143

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS-----SWNHGD 164
            +      +     I  P ++K   GG   G+ V+K D  +     ++      ++   D
Sbjct: 144 KLTSVDIALSEAQHIGYPIMVKASAGGGGRGMRVVKNDAELTKAYKEARSEALKAFG-DD 202

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLD 222
            + +E+YV+    +   +M D   ++              ++        + P   +   
Sbjct: 203 TVFLEKYVENPKHIEVQIMADNHGNMV-----HLFERDCSVQRRFQKVVEIAPCITLSQA 257

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              ++ + A    Q++    +   +FL D     ++++E+N 
Sbjct: 258 AKDKLYQYALSICQSVNYNNVGTVEFLVDSDEN-IYFIEVNP 298


>gi|161525949|ref|YP_001580961.1| acetyl-CoA carboxylase biotin carboxylase subunit [Burkholderia
           multivorans ATCC 17616]
 gi|189349332|ref|YP_001944960.1| acetyl-CoA carboxylase biotin carboxylase subunit [Burkholderia
           multivorans ATCC 17616]
 gi|221213231|ref|ZP_03586206.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Burkholderia
           multivorans CGD1]
 gi|160343378|gb|ABX16464.1| acetyl-CoA carboxylase, biotin carboxylase [Burkholderia
           multivorans ATCC 17616]
 gi|189333354|dbj|BAG42424.1| acetyl-CoA carboxylase [Burkholderia multivorans ATCC 17616]
 gi|221166683|gb|EED99154.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Burkholderia
           multivorans CGD1]
          Length = 455

 Score = 72.1 bits (176), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 79/222 (35%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         L  DK+ +KQ +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAERVEQSGFTFIGPRPETIRLMGDKVTAKQTMIKTGVPCVPGSEG 136

Query: 112 ---LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
                 +  +     I  P +IK   GG   G+ V+  + ++   +     ++       
Sbjct: 137 ALPEDPKEIVKIARAIGYPVIIKAAGGGGGRGMRVVHTEAALVNAVNMTREEAGRAFGNP 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
           Q+ +E++++    +   V+ DA  +   +            K          PA  IP  
Sbjct: 197 QVYMEKFLENPRHIEIQVLSDAHKNAIWLGERDCSMQRRHQK-----VIEEAPAPGIPRR 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +   +      A + +G  G    +FL+   + + +++E+N 
Sbjct: 252 LIDRIGDRCADACKKMGYLGAGTFEFLY--ENGEFYFIEMNT 291


>gi|325298460|ref|YP_004258377.1| Phosphoribosylglycinamide formyltransferase 2 [Bacteroides
           salanitronis DSM 18170]
 gi|324318013|gb|ADY35904.1| Phosphoribosylglycinamide formyltransferase 2 [Bacteroides
           salanitronis DSM 18170]
          Length = 389

 Score = 72.1 bits (176), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 51/250 (20%), Positives = 87/250 (34%), Gaps = 37/250 (14%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD--- 92
           +D D ++  V+    PD+    +     E         L  +      ++ SA +++   
Sbjct: 52  LDGD-ALDRVVEKYHPDIIVPEIEAIRTE--------RLYHLEKEGIQVVPSARAVNFTM 102

Query: 93  --KMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVIKKDQ 148
             K          G+          F    ++   I  P VIKPL   S  G  V K  +
Sbjct: 103 NRKAIRDLAAKELGLKTAKYFYAKSFDELKEAAEKIGFPCVIKPLMSSSGKGQSVAKGPE 162

Query: 149 SIPLDLLQSSSWNHGD--QLLIEQYV----DGIELTCGVMGDASLDVTEIA-VPKSDFYS 201
            +          + GD  +L+IE+++    +   LT       +L    I  V K   Y 
Sbjct: 163 DLEHAWHYGCEGSRGDIKELIIEEFIQFDSEITLLTVTQKNGPTLFCPPIGHVQKGGDY- 221

Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
                         PA I  +   E QR+A    +A+   GI   +F     +  V++ E
Sbjct: 222 ---------RESFQPAHIAPEHLAEAQRMAAKVTEALTGYGIWGVEFFLSHENG-VYFSE 271

Query: 262 INVQP---GM 268
           ++ +P   GM
Sbjct: 272 LSPRPHDTGM 281


>gi|284041705|ref|YP_003392045.1| carbamoyl-phosphate synthase L chain ATP- binding protein
           [Conexibacter woesei DSM 14684]
 gi|283945926|gb|ADB48670.1| Carbamoyl-phosphate synthase L chain ATP- binding protein
           [Conexibacter woesei DSM 14684]
          Length = 691

 Score = 72.1 bits (176), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 47/210 (22%), Positives = 78/210 (37%), Gaps = 19/210 (9%)

Query: 69  QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI----LVNRFTMDSQHLI 124
           QA+++   + +      A  L  DK R+KQ+    GVPV P I    L            
Sbjct: 98  QAVID-AGLTWIGPPPPAIELMGDKARAKQLAREAGVPVVPGIDGADLTYEQIDAFAAEH 156

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQLLIEQYVD-GIELTC 179
             P V+K + GG   G+ V++    +   L  +          D++L+E+Y++    +  
Sbjct: 157 GFPVVVKAVAGGGGKGMRVVRAATELRGALDAARREAAAAFGDDRVLVERYLERPRHIEV 216

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
            V+ DA   V  +   +        K             +  D   E+   A    QA G
Sbjct: 217 QVLADAHGAVVHLGERECSLQRRHQK----VVEEAPSPVVDPDWRAEMGAAAVRLAQACG 272

Query: 240 CRGISRSDFLF-----DPLSRKVFWLEINV 264
             G    + +      D LS + F+LE+N 
Sbjct: 273 YAGAGTVELIVPGGSGDVLSGEFFFLEMNT 302


>gi|260642205|ref|ZP_05414861.2| acetyl-CoA carboxylase, biotin carboxylase subunit [Bacteroides
           finegoldii DSM 17565]
 gi|260623094|gb|EEX45965.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Bacteroides
           finegoldii DSM 17565]
          Length = 510

 Score = 72.1 bits (176), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 82/220 (37%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       +   I +            DK+ ++  +   GVPV P    
Sbjct: 84  AIHPGYGFLSENATFARRCQEEGIIFIGPNPETMEAMGDKIAARIKMIEAGVPVVPGTQD 143

Query: 114 NRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
           N  +++      + I  P ++K   GG   G+ +I   + +      + S +      D 
Sbjct: 144 NLKSVEEAIELCNKIGYPVMLKASMGGGGKGMRLIHNAEEVEEAYTTAKSESLSSFGDDT 203

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E++V+    +   ++GD   +V  +   +        K             +  ++ 
Sbjct: 204 VYLEKFVEEPHHIEFQILGDKHGNVIHLCERECSVQRRNQKI----VEETPSVFVTPELR 259

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K++   A  A +A+   G    +FL D   R  ++LE+N 
Sbjct: 260 KDMGEKAVAAAKAVNYIGAGTIEFLVDKH-RNYYFLEMNT 298


>gi|87125678|ref|ZP_01081522.1| carbamoyl-phosphate synthase, large subunit [Synechococcus sp.
           RS9917]
 gi|86166654|gb|EAQ67917.1| carbamoyl-phosphate synthase, large subunit [Synechococcus sp.
           RS9917]
          Length = 1107

 Score = 72.1 bits (176), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 61/283 (21%), Positives = 97/283 (34%), Gaps = 44/283 (15%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL   GF+V  +         D D              V  V+   +PD    
Sbjct: 29  SGTQACKALRADGFEVVLVNSNPASIMTDPDMADRTYVEPLTPEVVTRVIEQERPDALLP 88

Query: 57  VLHGNFG--------EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
            + G           E+G     LE   +    + + A   + D++  KQ +   GV VC
Sbjct: 89  TMGGQTALNLAVALSENGT----LERYGVELIGADLQAIQKAEDRLLFKQAMERIGVKVC 144

Query: 109 PSIL---VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
           PS +   +         + S P +I+P       G  +    +            +   Q
Sbjct: 145 PSGIASSLEEADAVGAAIGSFPRIIRPAFTLGGSGGGIAYNPEDYAAICKSGLDASPVSQ 204

Query: 166 LLIEQYVDG-IELTCGVMGD-ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
           +LIEQ + G  E    VM D A   V   ++   D           +S  V PA+ +   
Sbjct: 205 ILIEQSLLGWKEFELEVMRDLADNVVIVCSIENLDPMGVHT----GDSITVAPAQTLTDR 260

Query: 223 IYKEVQRLAFLAHQAIG-CRGISRSDFLFDPLSRKVFWLEINV 264
            Y+ ++  A    + IG   G S   F  +P+   V  +E+N 
Sbjct: 261 EYQRLRDQAIAIIREIGVATGGSNIQFAINPVDGDVVVIEMNP 303



 Score = 48.6 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/219 (14%), Positives = 78/219 (35%), Gaps = 14/219 (6%)

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI--SPPYVIKPLKGGSS 138
            +   +   + D+ + + ++    +    + L        +       P V++P      
Sbjct: 687 GTSPESIDRAEDREQFEAILRQLDIRQPRNGLARSEAEAREVAAAVGYPVVVRPSYVLGG 746

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKS 197
             + V+   + +   + ++        +LI+QY++   E+    + DAS  V    + + 
Sbjct: 747 RAMEVVFDQEELDRYMAEAVQVEPDHPVLIDQYLENATEVDVDALCDASGTVVIGGLME- 805

Query: 198 DFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF--DPLS 254
             +       S +S   LPA  +  +    ++R +     A+  +G+    F    D   
Sbjct: 806 --HIEPAGIHSGDSACCLPAVSLGAEALATIRRWSKALALALKVQGLINLQFAVQRDTSG 863

Query: 255 RK-VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           ++ V+ +E N +   T     P +A   G     +   +
Sbjct: 864 KEVVYIIEANPRASRT----VPFVAKATGQPLARIATRL 898


>gi|254253298|ref|ZP_04946616.1| Biotin carboxylase [Burkholderia dolosa AUO158]
 gi|124895907|gb|EAY69787.1| Biotin carboxylase [Burkholderia dolosa AUO158]
          Length = 455

 Score = 72.1 bits (176), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 79/222 (35%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H  +G   E+      +E     +         L  DK+ +KQ +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAERVEQSGFTFIGPRPETIRLMGDKVTAKQTMIKTGVPCVPGSEG 136

Query: 113 ----VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
                 +  +     I  P +IK   GG   G+ V+  + ++   +     ++       
Sbjct: 137 ALPDDPKEIVKIARAIGYPVIIKAAGGGGGRGMRVVHTEAALVNAVNMTREEAGRAFGNP 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
           Q+ +E++++    +   V+ DA  +   +            K          PA  IP  
Sbjct: 197 QVYMEKFLENPRHIEIQVLSDAHKNAIWLGERDCSMQRRHQK-----VIEEAPAPGIPRR 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +   +      A + +G  G    +FL+   + + +++E+N 
Sbjct: 252 LIDRIGDRCADACKKMGYLGAGTFEFLY--ENGEFYFIEMNT 291


>gi|46108670|ref|XP_381393.1| hypothetical protein FG01217.1 [Gibberella zeae PH-1]
          Length = 1170

 Score = 72.1 bits (176), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 54/289 (18%), Positives = 105/289 (36%), Gaps = 37/289 (12%)

Query: 4   LMGGISSEREVSLSSGKACASALEDAGF--------------------KVSQIDVDRS-V 42
           L  G + E + S   G     AL++AG                     +V  + V    V
Sbjct: 104 LAIGQAGEFDYS---GAQALKALKEAGVASVLINPNIATIQTNHSLADEVYYLPVTPEYV 160

Query: 43  GLVLAHLKPDLAFNVLHG----NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQ 98
             V+   KPD  F    G    N G +     + E   +    + +    LS D+    +
Sbjct: 161 SYVIEKEKPDGIFLSFGGQTALNLGVEMQRLGLFEKYGVKVLGTSVRTLELSEDRDLFAR 220

Query: 99  VVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
            +    +P+  SI V      +++   +  P +++       LG      ++ +    + 
Sbjct: 221 ALEEINIPIAKSIAVGTVEEALEAAETVGYPIIVRAAYALGGLGSGFANNEEELR--NMA 278

Query: 157 SSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215
           + S     Q+L+E+ + G  EL   V+ DA+ +   I V   + +   L   + +S  V 
Sbjct: 279 ARSLTLSPQILVEKSLKGWKELEYEVVRDANNN--CITVCNMENFD-PLGIHTGDSIVVA 335

Query: 216 PAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
           P++ +  + Y  ++  A    + +G  G     +   P       +E+N
Sbjct: 336 PSQTLSDEEYHMLRSAAIKIVRHLGVVGECNVQYALQPDGLDYRVIEVN 384



 Score = 55.1 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/176 (14%), Positives = 61/176 (34%), Gaps = 12/176 (6%)

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVI 130
           E        +       + D+ +  +++ S GV       +   +        +  P ++
Sbjct: 732 ETGGANVLGTDPRDIDKAEDRQKFSEILDSIGVDQPAWKELTSVKDAEKFAEEVGYPVLV 791

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL----TCGVMGDAS 186
           +P    S   + VI     +   L  +S+ +    ++I ++++G +          G+  
Sbjct: 792 RPSYVLSGAAMTVISSKADLKDKLEAASNVSPDHPVVISKFIEGAQEIDVDGVSANGELI 851

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
           L      V ++  +S +       +  + PA +     + V+ +A    QA    G
Sbjct: 852 LHAVSEHVEQAGVHSGDA------TLVLPPANLDSTTMERVKEIAKKVAQAWKISG 901


>gi|221202425|ref|ZP_03575457.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Burkholderia
           multivorans CGD2M]
 gi|221208115|ref|ZP_03581120.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Burkholderia
           multivorans CGD2]
 gi|221172018|gb|EEE04460.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Burkholderia
           multivorans CGD2]
 gi|221177702|gb|EEE10117.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Burkholderia
           multivorans CGD2M]
          Length = 455

 Score = 72.1 bits (176), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 79/222 (35%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H  +G   E+      +E     +         L  DK+ +KQ +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAERVEQSGFTFIGPRPETIRLMGDKVTAKQTMIKTGVPCVPGSEG 136

Query: 113 ----VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
                 +  +     I  P +IK   GG   G+ V+  + ++   +     ++       
Sbjct: 137 ALPDDPKEIVKIARAIGYPVIIKAAGGGGGRGMRVVHTEAALVNAVNMTREEAGRAFGNP 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
           Q+ +E++++    +   V+ DA  +   +            K          PA  IP  
Sbjct: 197 QVYMEKFLENPRHIEIQVLSDAHKNAIWLGERDCSMQRRHQK-----VIEEAPAPGIPRR 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +   +      A + +G  G    +FL+   + + +++E+N 
Sbjct: 252 LIDRIGDRCADACKKMGYLGAGTFEFLY--ENGEFYFIEMNT 291


>gi|189095269|ref|NP_001121164.1| propionyl-CoA carboxylase alpha chain, mitochondrial isoform b
           [Homo sapiens]
          Length = 702

 Score = 72.1 bits (176), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 75/220 (34%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      L   ++ +      A     DK+ SK +     V   P    
Sbjct: 112 AVHPGYGFLSENKEFARCLAAEDVVFIGPDTHAIQAMGDKIESKLLAKKAEVNTIPGFDG 171

Query: 112 LVNRFTMDS--QHLISPPYVIKPLKGGSSLGIIVIKKDQS----IPLDLLQSSSWNHGDQ 165
           +V            I  P +IK   GG   G+ +   D+       L   +++S    D+
Sbjct: 172 VVKDAEEAVRIAREIGYPVMIKASAGGGGKGMRIAWDDEETRDGFRLSSQEAASSFGDDR 231

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           LLIE+++D    +   V+GD   +   +   +        K             +  +  
Sbjct: 232 LLIEKFIDNPRHIEIQVLGDKHGNALWLNERECSIQRRNQK----VVEEAPSIFLDAETR 287

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +   A    +A+        +FL D      ++LE+N 
Sbjct: 288 RAMGEQAVALARAVKYSSAGTVEFLVDSKKN-FYFLEMNT 326


>gi|78221881|ref|YP_383628.1| carbamoyl phosphate synthase large subunit [Geobacter
           metallireducens GS-15]
 gi|78193136|gb|ABB30903.1| carbamoyl-phosphate synthase large subunit [Geobacter
           metallireducens GS-15]
          Length = 1066

 Score = 72.1 bits (176), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 59/313 (18%), Positives = 105/313 (33%), Gaps = 49/313 (15%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL   G+++  +         D               ++  ++   +PD    
Sbjct: 29  SGTQACKALRKLGYRIVLVNSNPATIMTDPGMADATYIEPLNVDTLTEIIRKERPDALLP 88

Query: 57  VLHGNFGED---GLVQ-AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G  G +    L Q  +L+   +      + A     D+   K+ ++  G+    S +
Sbjct: 89  NLGGQTGLNLSSALAQAGVLDRYGVRVIGVNLDAIKRGEDRETFKETMTRLGIETARSEI 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +D    I  P VI+P       G       +     + +  + +   Q+L+E+
Sbjct: 149 ATTMEGALDVVSRIGLPVVIRPAYTMGGTGGGFAYNMEEFRTIVARGLAASPVSQILVEE 208

Query: 171 YVDG-IELTCGVMGD-ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEV 227
            V G  EL   V+ D  +  +T   +   D           +S    P   I  ++   +
Sbjct: 209 SVLGWEELELEVVRDAKNQKITVCFIENVDAMGVHT----GDSYCTAPMLTISSELQARL 264

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI--------FPEMA- 278
           Q  A+    AI   G +   F  DP + +V  +EIN +   T  S         FP    
Sbjct: 265 QDYAYRIVDAIEVIGGTNVQFAHDPKTGRVVVIEINPR---TSRSSALASKATGFPIAMV 321

Query: 279 ---AYAGYSFREL 288
                AG +  E+
Sbjct: 322 SSLLAAGLTLDEI 334



 Score = 60.1 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 41/263 (15%), Positives = 93/263 (35%), Gaps = 29/263 (11%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAI---- 71
           AL +AG++   +         D D S  L    L  +   + +H     +G+V       
Sbjct: 580 ALREAGYETIMVNCNPETVSTDYDTSDKLYFEPLTVEDVLS-IHAKEKPEGVVVQFGGQT 638

Query: 72  -------LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQH 122
                  LE   +    +      L+ D+ R  +V++  G+P   S + +     +    
Sbjct: 639 PLNIAVELEAAGVRIIGTTPETIDLAEDRQRFARVMTELGIPQPESGMASTLDEALAVAG 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGV 181
            I  P +++P        + V+  ++ +   + ++   +    +LI+++++  IE     
Sbjct: 699 RIDYPLMVRPSYVLGGRAMEVVHDEEMLREYVTKAVDVSPERPILIDRFLENAIEAEADA 758

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241
           + D +       +   +       +S  ++  + P  IP      +         A+G  
Sbjct: 759 ISDGTDAFVPAVMEHIELAGV---HSGDSACVIPPVSIPQKHIDTIDEYTRKIAVAMGVV 815

Query: 242 GISRSDFLFDPLSRKVFWLEINV 264
           G+   +  +      V+ LE N 
Sbjct: 816 GL--MNIQYAIADNTVYILEANP 836


>gi|296366|emb|CAA32763.1| propionyl-CoA carboxylase [Homo sapiens]
 gi|12652777|gb|AAH00140.1| PCCA protein [Homo sapiens]
 gi|21425221|gb|AAK61392.1| propionyl-CoA carboxylase alpha polypeptide precursor [Homo
           sapiens]
          Length = 703

 Score = 72.1 bits (176), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 75/220 (34%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      L   ++ +      A     DK+ SK +     V   P    
Sbjct: 113 AVHPGYGFLSENKEFARCLAAEDVVFIGPDTHAIQAMGDKIESKLLAKKAEVNTIPGFDG 172

Query: 112 LVNRFTMDS--QHLISPPYVIKPLKGGSSLGIIVIKKDQS----IPLDLLQSSSWNHGDQ 165
           +V            I  P +IK   GG   G+ +   D+       L   +++S    D+
Sbjct: 173 VVKDAEEAVRIAREIGYPVMIKASAGGGGKGMRIAWDDEETRDGFRLSSQEAASSFGDDR 232

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           LLIE+++D    +   V+GD   +   +   +        K             +  +  
Sbjct: 233 LLIEKFIDNPRHIEIQVLGDKHGNALWLNERECSIQRRNQK----VVEEAPSIFLDAETR 288

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +   A    +A+        +FL D      ++LE+N 
Sbjct: 289 RAMGEQAVALARAVKYSSAGTVEFLVDSKKN-FYFLEMNT 327


>gi|315640850|ref|ZP_07895949.1| carbamoyl-phosphate synthase, large subunit [Enterococcus italicus
           DSM 15952]
 gi|315483389|gb|EFU73886.1| carbamoyl-phosphate synthase, large subunit [Enterococcus italicus
           DSM 15952]
          Length = 1049

 Score = 72.1 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 49/296 (16%), Positives = 107/296 (36%), Gaps = 34/296 (11%)

Query: 25  ALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNVLHGNFG 63
           AL++ G++V  ++        DR +                +L    PD     L G  G
Sbjct: 26  ALKEEGYEVVLVNSNPATIMTDREIADRVYIEPITYEFVSRILRKEMPDAILPTLGGQTG 85

Query: 64  EDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
            +  ++     IL+ L+I    + + A   + D+   K+++     P+  S ++      
Sbjct: 86  LNMAMELSKAGILDELKIELLGTKLSAIDQAEDRDLFKKLMEELAQPIPESDIITTVEQA 145

Query: 120 --SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IE 176
                 I  P +++P       G  +   ++ +          +   Q LIE+ + G  E
Sbjct: 146 VVFAKKIGYPVIVRPAFTLGGTGGGMCANEEELRQIAENGLKLSPVTQCLIERSIAGFKE 205

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +   VM D++ +   I V   + +     ++  +        +    Y+ ++  +    +
Sbjct: 206 IEYEVMRDSADNA--IVVCNMENFDPVGIHTGDSIVFAPSQTLSDYEYQMLRDASLTIIR 263

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           A+   G        DP S + + +E+N  P ++  S     +   GY   +L   +
Sbjct: 264 ALKIEGGCNVQLALDPESFQYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAKI 315



 Score = 66.3 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 23/222 (10%), Positives = 71/222 (31%), Gaps = 13/222 (5%)

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKP 132
             +    + I     + ++   +Q +    +P             +     I  P +++P
Sbjct: 639 AGVKILGTTIEDLDRAENRDLFEQALKELEIPQPEGDTATNKEDAVAIAKRIGFPVLVRP 698

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192
                   + +++ +  +   +  +   +    +L+++Y+ G E     + D  + +   
Sbjct: 699 SYVLGGRAMEIVENETDLRDYMEHAVKASPEHPVLVDRYLVGKECEVDAICDGKIVLIPG 758

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
            +   +           +S  V P + +     + +          + C G+    F+  
Sbjct: 759 IMEHIERAGVHS----GDSMAVYPPQTLSEKTKQTIIDYTKKLALGLNCIGMMNIQFVIH 814

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
                V+ +E+N +   T     P ++   G    ++    +
Sbjct: 815 --DETVYVIEVNPRASRT----VPFLSKVTGIPMAQIATKAI 850


>gi|237730173|ref|ZP_04560654.1| acetyl CoA carboxylase [Citrobacter sp. 30_2]
 gi|226908779|gb|EEH94697.1| acetyl CoA carboxylase [Citrobacter sp. 30_2]
          Length = 462

 Score = 72.1 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 42/222 (18%), Positives = 82/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         L  DK+ +   +   GVP  P    
Sbjct: 90  AIHPGYGFLSENANFAEQVERSGFIFIGPKADTIRLMGDKVSAITAMKKAGVPTVPGSDG 149

Query: 112 -LVNRFTMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
            L +    +  H   I  P +IK   GG   G+ V++ D  +   +     ++ +  + D
Sbjct: 150 PLGDDMDANRAHAKRIGYPVIIKASGGGGGRGMRVVRSDAELAQSISMTKAEAKAAFNND 209

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+Y++    +   V+ D   +   +A           K          PA  I  +
Sbjct: 210 MVYMEKYLENPRHIEIQVLADGQGNAIYLAERDCSMQRRHQK-----VVEEAPAPGITPE 264

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + + +      A   IG RG    +FLF   + + +++E+N 
Sbjct: 265 LRRYIGERCAKACVDIGYRGAGTFEFLF--ENGEFYFIEMNT 304


>gi|225175359|ref|ZP_03729354.1| carbamoyl-phosphate synthase, large subunit [Dethiobacter
           alkaliphilus AHT 1]
 gi|225169111|gb|EEG77910.1| carbamoyl-phosphate synthase, large subunit [Dethiobacter
           alkaliphilus AHT 1]
          Length = 1086

 Score = 72.1 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 53/278 (19%), Positives = 102/278 (36%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL + G+K+  ++ + +                     + +++   KPD    
Sbjct: 29  SGTQACKALREEGYKIVLVNSNPATIMTDPEMADAVYIEPLNTDILEMIIDKEKPDAILP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  V+     IL+   +    +GI A   + D+   +  +   G+ V  S  
Sbjct: 89  TIGGQTALNLTVELAEKGILDKYRVELIGAGIDAIKKAEDRELFRAAIQKVGLDVPQSFA 148

Query: 113 VNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           V+     +D    I  P +++P       G  +    Q     L +    +   Q+L+E+
Sbjct: 149 VSSLAEGLDVIGEIGFPAILRPAFTLGGTGGGIAYNIQEYREILEKGLDLSPTKQVLVEE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            V G  E    VM D   +V  I   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SVLGWKEFELEVMRDKKDNVVIICSIEN----FDPMGIHTGDSITVAPAQTLTDKEYQRM 264

Query: 228 QRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
           +  A    + IG   G S   F   P   ++  +E+N 
Sbjct: 265 RDAAIAIIREIGVDTGGSNIQFGISPQDGRLVVIEMNP 302



 Score = 61.7 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 32/222 (14%), Positives = 87/222 (39%), Gaps = 12/222 (5%)

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKP 132
             +    +   +   + D+ R K+++    +    S+        + +   I  P +++P
Sbjct: 666 AGVKILGTSPDSVDRAEDRKRFKELLDKLELKQPESVTAVSVEEALAAVQNIGYPVIVRP 725

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTE 191
                   + +I  D ++   + ++   +    +LI++Y++G IE+    + D +  +  
Sbjct: 726 SYVLGGRAMEIIYSDDNLLDYMNRAMVASPEHPVLIDKYLEGAIEVDVDAVSDGTNTLIA 785

Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
             +   +       +S  ++  + P  I  DI +E++         +G  G+   +  + 
Sbjct: 786 GIMEHIEEAGI---HSGDSACSLPPYSISSDIIEEIRVQTKALATELGVCGL--MNIQYA 840

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
             +  ++ LE+N +   T     P ++   G  F +L   ++
Sbjct: 841 VKNGDIYILEVNPRASRT----IPFVSKVTGIPFAKLATRVI 878


>gi|293571980|ref|ZP_06682994.1| phosphoribosylaminoimidazole carboxylase, ATPase subunit
           [Enterococcus faecium E980]
 gi|291607998|gb|EFF37306.1| phosphoribosylaminoimidazole carboxylase, ATPase subunit
           [Enterococcus faecium E980]
          Length = 370

 Score = 72.1 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 37/207 (17%), Positives = 83/207 (40%), Gaps = 15/207 (7%)

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTMDSQ 121
           E+  V+A+  +L + +   G    A++ D++  K  + +  + + P   +       D+ 
Sbjct: 74  ENVSVEALNAILPMSFIPQGTDLLAITQDRLLEKSFLETNNIVIAPYATIVSPTDIQDAI 133

Query: 122 HLISPPYVIKPLKGG-SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTC 179
             I  P V+K  +GG    G  V+K    +   +            ++E ++    E++ 
Sbjct: 134 DGIGYPCVLKTTRGGYDGKGQYVLKSRADLAPAMDL----LREGTCVLEAWIPFEKEISI 189

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
            V G+   D T   V ++         +++    + PA I  D+ +E +R+A +  +A+ 
Sbjct: 190 MVAGNGQGDFTTFPVVENIHR------NNILHETIAPAAIDQDVIEEAERIARVIAEAVS 243

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQP 266
             G    +         ++  E+  +P
Sbjct: 244 LSGALGVEMFLTKTGG-LYVNELAPRP 269


>gi|257887629|ref|ZP_05667282.1| phosphoribosylaminoimidazole carboxylase [Enterococcus faecium
           1,141,733]
 gi|257896124|ref|ZP_05675777.1| phosphoribosylaminoimidazole carboxylase [Enterococcus faecium
           Com12]
 gi|257823683|gb|EEV50615.1| phosphoribosylaminoimidazole carboxylase [Enterococcus faecium
           1,141,733]
 gi|257832689|gb|EEV59110.1| phosphoribosylaminoimidazole carboxylase [Enterococcus faecium
           Com12]
          Length = 374

 Score = 72.1 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 37/207 (17%), Positives = 83/207 (40%), Gaps = 15/207 (7%)

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTMDSQ 121
           E+  V+A+  +L + +   G    A++ D++  K  + +  + + P   +       D+ 
Sbjct: 78  ENVSVEALNAILPMSFIPQGTDLLAITQDRLLEKSFLETNNIVIAPYATIVSPTDIQDAI 137

Query: 122 HLISPPYVIKPLKGG-SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTC 179
             I  P V+K  +GG    G  V+K    +   +            ++E ++    E++ 
Sbjct: 138 DGIGYPCVLKTTRGGYDGKGQYVLKSRADLAPAMDL----LREGTCVLEAWIPFEKEISI 193

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
            V G+   D T   V ++         +++    + PA I  D+ +E +R+A +  +A+ 
Sbjct: 194 MVAGNGQGDFTTFPVVENIHR------NNILHETIAPAAIDQDVIEEAERIARVIAEAVS 247

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQP 266
             G    +         ++  E+  +P
Sbjct: 248 LSGALGVEMFLTKTGG-LYVNELAPRP 273


>gi|261403460|ref|YP_003247684.1| Carbamoyl-phosphate synthase L chain ATP-binding protein
           [Methanocaldococcus vulcanius M7]
 gi|261370453|gb|ACX73202.1| Carbamoyl-phosphate synthase L chain ATP-binding protein
           [Methanocaldococcus vulcanius M7]
          Length = 480

 Score = 72.1 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 45/277 (16%), Positives = 94/277 (33%), Gaps = 34/277 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G     +         D D            + V  ++   +PD    
Sbjct: 26  SGSQACKALKEEGIYTILVNSNPATIQTDTDMADKVYLEPLHPKIVEKIIEKERPDAILP 85

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G  G +  +    + +L+   I    S I    ++ D+    + ++     V     
Sbjct: 86  TMGGQTGLNLALELHRRGVLDKYGIKLLGSNIKTIEIAEDRELFAEAMAEINEAVTKCKA 145

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           VN     ++    I  P +++P       G  +    + +     +   ++  +Q+LI++
Sbjct: 146 VNSVDEAVEFAEEIGYPVIVRPAFTLGGTGGGIAHNKEELIDITSKGLKYSIINQVLIDE 205

Query: 171 YVDG-IELTCGVMGD-ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            V G  E    VM D     +    +   D            S  V P + +P + Y+++
Sbjct: 206 SVLGWKEFELEVMRDRKDTCIIVCGMENIDPMGIHT----GESIVVSPIQTLPDEFYQKL 261

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +  A    + +G  G     F  +    +   +E+N 
Sbjct: 262 RNAAIKIIRHLGIEGGCNIQFAVNKEMTEYRVIEVNP 298


>gi|227551254|ref|ZP_03981303.1| phosphoribosylaminoimidazole carboxylase [Enterococcus faecium
           TX1330]
 gi|227179594|gb|EEI60566.1| phosphoribosylaminoimidazole carboxylase [Enterococcus faecium
           TX1330]
          Length = 377

 Score = 72.1 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 37/207 (17%), Positives = 83/207 (40%), Gaps = 15/207 (7%)

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTMDSQ 121
           E+  V+A+  +L + +   G    A++ D++  K  + +  + + P   +       D+ 
Sbjct: 81  ENVSVEALNAILPMSFIPQGTDLLAITQDRLLEKSFLETNNIVIAPYATIVSPTDIQDAI 140

Query: 122 HLISPPYVIKPLKGG-SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTC 179
             I  P V+K  +GG    G  V+K    +   +            ++E ++    E++ 
Sbjct: 141 DGIGYPCVLKTTRGGYDGKGQYVLKSRADLAPAMDL----LREGTCVLEAWIPFEKEISI 196

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
            V G+   D T   V ++         +++    + PA I  D+ +E +R+A +  +A+ 
Sbjct: 197 MVAGNGQGDFTTFPVVENIHR------NNILHETIAPAAIDQDVIEEAERIARVIAEAVS 250

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQP 266
             G    +         ++  E+  +P
Sbjct: 251 LSGALGVEMFLTKTGG-LYVNELAPRP 276


>gi|163796863|ref|ZP_02190820.1| Biotin/lipoyl attachment:Carbamoyl-phosphate synthase L chain,
           ATP-binding:Carbamoyl-phosphate synthetase large [alpha
           proteobacterium BAL199]
 gi|159177852|gb|EDP62401.1| Biotin/lipoyl attachment:Carbamoyl-phosphate synthase L chain,
           ATP-binding:Carbamoyl-phosphate synthetase large [alpha
           proteobacterium BAL199]
          Length = 673

 Score = 72.1 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 76/221 (34%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       E   + +      A      K  +K ++   GVP+ P    
Sbjct: 80  AVHPGYGFLSENAGFARACEAAGVIFVGPPASAIDAMGSKAGAKTLMEKAGVPLVPGYHG 139

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
           +         +   I  P ++K   GG   G+ V++ +  +P  +  +          D+
Sbjct: 140 DDQAPAILSQAALAIGFPVLLKASAGGGGKGMRVVRSEDELPAAIDSAKREGKASFGDDR 199

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           L++E+Y++    +   V  D   +                +          PA  +   I
Sbjct: 200 LIVEKYLERPRHVEVQVFADRHGNTV-----HLFERDCSAQRRHQKILEEAPAPGLDPAI 254

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              + R A  A +A+G  G    +F+ D       ++E+N 
Sbjct: 255 RDAMGRAAVAAAEAVGYVGAGTVEFILDAS-GTFHFMEMNT 294


>gi|148239765|ref|YP_001225152.1| carbamoyl phosphate synthase large subunit [Synechococcus sp. WH
           7803]
 gi|147848304|emb|CAK23855.1| Carbamoylphosphate synthase large subunit [Synechococcus sp. WH
           7803]
          Length = 1107

 Score = 72.1 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 58/283 (20%), Positives = 96/283 (33%), Gaps = 44/283 (15%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL   G++V  +         D +              V  V+   +PD    
Sbjct: 29  SGTQACKALRAEGYEVVLVNSNPASIMTDPEMADRTYVEPLTPEVVTRVIERERPDALLP 88

Query: 57  VLHGN--------FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
            + G           E+G     LE   I    + + A   + D+   KQ +   GV VC
Sbjct: 89  TMGGQTALNLAVALAENGT----LERFGIELIGADLKAIRKAEDRQLFKQAMERIGVKVC 144

Query: 109 PSILVNRFTMDSQ---HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
           PS + +           + S P +I+P       G  +    +            +   Q
Sbjct: 145 PSGIASSMDEAKAVGDSIGSFPRIIRPAFTLGGSGGGIAYNPEEFDAICKSGLDASPVSQ 204

Query: 166 LLIEQYVDG-IELTCGVMGD-ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
           +LIE+ + G  E    VM D A   V   ++   D           +S  V PA+ +   
Sbjct: 205 ILIEKSLIGWKEFELEVMRDLADNVVIVCSIENLDPMGVHT----GDSITVAPAQTLTDR 260

Query: 223 IYKEVQRLAFLAHQAIG-CRGISRSDFLFDPLSRKVFWLEINV 264
            Y+ ++  +    + IG   G S   F  +P   +V  +E+N 
Sbjct: 261 EYQRLRDQSIAIIREIGVATGGSNIQFAINPADGEVVVIEMNP 303



 Score = 49.3 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 33/227 (14%), Positives = 77/227 (33%), Gaps = 14/227 (6%)

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--QHLISPPYVIKPLKGGSS 138
            +   +  L+ D+ + + ++    +    + L             +  P V++P      
Sbjct: 687 GTTPESIDLAEDREQFEAILRQLDIRQPRNGLARSEEEARTVAETVGYPVVVRPSYVLGG 746

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKS 197
             + V+  +  +   + ++        +LI+QY+ + IE+    + D    V    + + 
Sbjct: 747 RAMEVVYDEHELNRYMNEAVQVEPDHPVLIDQYLQNAIEVDVDALCDHEGTVVIGGLME- 805

Query: 198 DFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF---LFDPL 253
             +       S +S   LP   +  +    ++         +  RG+    F     +  
Sbjct: 806 --HIEPAGIHSGDSACCLPSVSLGTEALNTIKTWTKALALRLNVRGLINLQFAVQRAETG 863

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           + KVF +E N +   T     P +A   G     +   ++   S  R
Sbjct: 864 TEKVFIIEANPRASRT----VPFVAKATGVPLARIATRLMAGESLSR 906


>gi|114650516|ref|XP_001148854.1| PREDICTED: propionyl-CoA carboxylase alpha chain, mitochondrial
           isoform 7 [Pan troglodytes]
          Length = 702

 Score = 72.1 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 75/220 (34%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      L   ++ +      A     DK+ SK +     V   P    
Sbjct: 112 AVHPGYGFLSENKEFARCLAAEDVVFIGPDTHAIQAMGDKIESKLLAKKAEVNTIPGFDG 171

Query: 112 LVNRFTMDS--QHLISPPYVIKPLKGGSSLGIIVIKKDQS----IPLDLLQSSSWNHGDQ 165
           +V            I  P +IK   GG   G+ +   D+       L   +++S    D+
Sbjct: 172 VVKDAEEAVRIAREIGYPVMIKASAGGGGKGMRIAWDDEETRDGFRLSSQEAASSFGDDR 231

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           LLIE+++D    +   V+GD   +   +   +        K             +  +  
Sbjct: 232 LLIEKFIDNPRHIEIQVLGDKHGNALWLNERECSIQRRNQK----VVEEAPSIFLDAETR 287

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +   A    +A+        +FL D      ++LE+N 
Sbjct: 288 RAMGEQAVALARAVKYSSAGTVEFLVDSKKN-FYFLEMNT 326


>gi|257386723|ref|YP_003176496.1| RimK domain protein ATP-grasp [Halomicrobium mukohataei DSM 12286]
 gi|257169030|gb|ACV46789.1| RimK domain protein ATP-grasp [Halomicrobium mukohataei DSM 12286]
          Length = 288

 Score = 72.1 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 50/257 (19%), Positives = 90/257 (35%), Gaps = 31/257 (12%)

Query: 26  LEDAGFKVSQIDVDRSVGLVLAHLKPD-----LAFNVLHGNFGEDGLVQAILELLEIPYT 80
           L   G +VS +  D    + +A    D       F        E G+  A+L    +P+ 
Sbjct: 20  LAQRGIEVSHVRTDER-TIAIADSPFDEYDAGFVFPP---RLAEGGVADALL---GVPWV 72

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ-----HLISPPYVIKPLKG 135
            +G  A   S  K  +   +S  GVP   +++V+    ++          PP V+KP   
Sbjct: 73  -NGREAILRSRHKGEALAHLSQAGVPTPETVVVSDPVDEADLRAAFEQFDPPVVVKPNAT 131

Query: 136 GSSLGIIVIKKDQSIP-----LDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDV 189
              +G+       S       LDL+           L+++Y+ G  +    V+    +  
Sbjct: 132 TRGVGVAKAHDLDSFLGVCDYLDLVHDYRATGDQSFLVQEYLPGARDYRAMVVDGEYVGA 191

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
            E  +P+    S + K++           +  D  + V+R A     A+    +   D L
Sbjct: 192 VERRLPEDALASGQWKHNVHRGAEATGVTLAPDERELVRRAAA----ALEIDYLG-VDLL 246

Query: 250 FDPLSRKVFWLEINVQP 266
                 +    E N +P
Sbjct: 247 VT--DDRTVVNETNARP 261


>gi|189054903|dbj|BAG37887.1| unnamed protein product [Homo sapiens]
          Length = 703

 Score = 72.1 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 75/220 (34%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      L   ++ +      A     DK+ SK +     V   P    
Sbjct: 113 AVHPGYGFLSENKEFARCLAAEDVVFIGPDTHAIQAMGDKIESKLLAKKAEVNTIPGFDG 172

Query: 112 LVNRFTMDS--QHLISPPYVIKPLKGGSSLGIIVIKKDQS----IPLDLLQSSSWNHGDQ 165
           +V            I  P +IK   GG   G+ +   D+       L   +++S    D+
Sbjct: 173 VVKDAEEAVRIAREIGYPVMIKASAGGGGKGMRIAWDDEETRDGFRLSSQEAASSFGDDR 232

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           LLIE+++D    +   V+GD   +   +   +        K             +  +  
Sbjct: 233 LLIEKFIDNPRHIEIQVLGDKHGNALWLNERECSIQRRNQK----VVEEAPSIFLDAETR 288

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +   A    +A+        +FL D      ++LE+N 
Sbjct: 289 RAMGEQAVALARAVKYSSAGTVEFLVDSKKN-FYFLEMNT 327


>gi|90020458|ref|YP_526285.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Saccharophagus degradans 2-40]
 gi|89950058|gb|ABD80073.1| acetyl-CoA carboxylase, biotin carboxylase [Saccharophagus
           degradans 2-40]
          Length = 446

 Score = 72.1 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 81/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+      ++     +         +  DK+ + + +   GVP  P    
Sbjct: 77  AVHPGYGFLAENADFAEQVQKSGFTFIGPDPDVIRMMGDKVCAIEAMKKAGVPTVPGSGG 136

Query: 111 -ILVNRFT-MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGD 164
            +  +R   +   + I  P +IK   GG   G+ V+  + ++     L   ++ +    D
Sbjct: 137 ALPDDREECIRIGNRIGFPVIIKAAAGGGGRGMRVVHTESALWNSIQLTKAEAGAAFGDD 196

Query: 165 QLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+Y+ +   +   VM D   +               L+          PA  I + 
Sbjct: 197 TVYMEKYLQNPRHVEVQVMSDGQGNAV-----HFFDRDCSLQRRHQKVLEEAPAPGIDMA 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           I +EV      A   IG RG    +FL+       +++E+N 
Sbjct: 252 IREEVYAACVKACIEIGYRGAGTFEFLY--EDGNFYFIEMNT 291


>gi|325915492|ref|ZP_08177805.1| carbamoyl-phosphate synthase large subunit [Xanthomonas vesicatoria
           ATCC 35937]
 gi|325538293|gb|EGD09976.1| carbamoyl-phosphate synthase large subunit [Xanthomonas vesicatoria
           ATCC 35937]
          Length = 1080

 Score = 72.1 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 49/278 (17%), Positives = 102/278 (36%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL D G++V  +         D D            ++V  ++A  KPD    
Sbjct: 29  SGAQACKALRDEGYRVVLVNSNPATIMTDPDMADAVYIEPINWQTVEKIIAKEKPDALLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      +LE   +    +   A  ++ D+   +  +   G+    + +
Sbjct: 89  TMGGQTALNCALDLADNGVLEKYNVELIGAKREAIRMAEDRELFRVAMGEIGLDCPKAEV 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     +D Q  +  P +I+P       G  +    + +   + +    +   ++L+E+
Sbjct: 149 AHTLEEALDIQTRVGYPTIIRPSFTLGGSGGGIAYNREELIEIVGRGLELSPTTEVLVEE 208

Query: 171 YVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            V G  E    V+ D + + +   A+   D           +S  V PA+ +    Y+ +
Sbjct: 209 SVLGWKEFEMEVVRDTADNCIIVCAIENLDPMGVHT----GDSITVAPAQTLTDKEYQRL 264

Query: 228 QRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F   P + +V  +E+N 
Sbjct: 265 RDASIAVLRKIGVDTGGSNVQFGISPTTGRVVVIEMNP 302



 Score = 61.7 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 34/223 (15%), Positives = 87/223 (39%), Gaps = 12/223 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           LE   +P   +   +  L+ D+ R +Q+V   G+   P+ +       +     I  P V
Sbjct: 654 LEANGVPVIGTSPDSIDLAEDRERFQQLVDKLGLKQPPNRIARNAEEALVLAREIGYPLV 713

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLD 188
           ++P        + ++  +  +   +  +   ++   +L+++++D  +E+   ++ D   +
Sbjct: 714 VRPSYVLGGRAMEIVYGESDLARYVRDAVKVSNDSPVLLDRFLDNAVEVDVDIIADKDGN 773

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           V    +   +       +S  +S  + P  +      E++R   +  + +   G+  + F
Sbjct: 774 VLIGGL--MEHIEEAGVHSGDSSCSLPPYSLSPKTQAELRRQVVMLAEGLNVVGLMNTQF 831

Query: 249 LF---DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
                +     VF LE+N +   T     P ++   G    ++
Sbjct: 832 AVQVNEAGDDVVFLLEVNPRASRT----VPFVSKAIGMPLAKI 870


>gi|323359988|ref|YP_004226384.1| carbamoylphosphate synthase large subunit [Microbacterium testaceum
           StLB037]
 gi|323276359|dbj|BAJ76504.1| carbamoylphosphate synthase large subunit [Microbacterium testaceum
           StLB037]
          Length = 1095

 Score = 72.1 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 51/281 (18%), Positives = 99/281 (35%), Gaps = 41/281 (14%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG      L + G +V  +         D D              +  ++A  KPD    
Sbjct: 29  SGTQACRVLREEGVRVILVNSNPATIMTDPDFADATYIEPITPEVIESIIAKEKPDAVLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G    +  +Q     ILE  ++    +   A     D+   K++V   G  V  S++
Sbjct: 89  TLGGQTALNAAIQLHKRGILEKYDVELIGADFDAINRGEDRQIFKELVIEAGADVAASVI 148

Query: 113 VNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG---DQLL 167
            +     +     +  P V++P      LG      ++ +        +  H    +++L
Sbjct: 149 CHSMDELLAGAEKLGYPLVVRPSFTMGGLGSGFAYDEEDLRR---IGGAGLHDSPTNEVL 205

Query: 168 IEQYVDG-IELTCGVMGDASL-DVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIY 224
           +E+ + G  E    +M D +   V   ++   D           +S  V PA  +    Y
Sbjct: 206 LEESILGWKEYELELMRDTADNTVVVCSIENVDPVGVHT----GDSITVAPALTLTDREY 261

Query: 225 KEVQRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
           + ++ +     +A+G   G     F  DP + ++  +E+N 
Sbjct: 262 QRLRDIGIDIIRAVGVDTGGCNIQFAVDPATGRIIVIEMNP 302



 Score = 43.6 bits (102), Expect = 0.032,   Method: Composition-based stats.
 Identities = 40/270 (14%), Positives = 90/270 (33%), Gaps = 36/270 (13%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAI---- 71
           AL DAG++   +         D D S  L    L  +    VLH    + G +  +    
Sbjct: 581 ALSDAGYETVMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEVLHAES-QSGTILGVVCQL 639

Query: 72  -----------LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTM 118
                      +E        +   A  L+ ++    +++   G+    +         +
Sbjct: 640 GGQTPLGLAKGIEAAGYTILGTSPEAIDLAEERELFSRLLDDAGLVAPRNGTAIDVEGAV 699

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP---LDLLQSSSWNHGDQLLIEQYV-DG 174
                I  P +++P       G+ ++   +++    + +   +    G  LL+++++ D 
Sbjct: 700 TVAEEIGYPVLVRPSFVLGGRGMEIVYSTEALRDYFVRVADQAIIGPGLPLLVDRFLDDA 759

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
           IEL    + D +       +   +       +S  +S  + P  +       V+      
Sbjct: 760 IELDVDALFDGTDLYIGGVMEHLEEAGI---HSGDSSCTLPPVSLGRTEVDRVREATLAI 816

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +G RG+    F        ++ +E N 
Sbjct: 817 AKGVGVRGLLNVQFAISA--GVLYVIEANP 844


>gi|253826206|gb|ACT36390.1| carbamoyl phosphate synthase large subunit [uncultured bacterium
           L11E10]
          Length = 1080

 Score = 72.1 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 101/278 (36%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D +            ++V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYRVVLVNSNPATIMTDPEMADAVYIEPINWQTVEKIIAKERPDALLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      +L+   +    +   A  ++ D+   +  ++  G+    + +
Sbjct: 89  TMGGQTALNCALDLADHGVLDKYNVELIGARREAIMMAEDRELFRVAMAEIGLECPKAAV 148

Query: 113 VNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
              F    + Q  +  P +I+P       G  +    +     + +    +   ++L+E+
Sbjct: 149 ARSFEQAVEIQATVGYPTIIRPSFTLGGSGGGIAYNREEFEDIIKRGLELSPVHEVLVEE 208

Query: 171 YVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            V G  E    V+ D + + +   ++   D           +S  V PA+ +    Y+ +
Sbjct: 209 SVLGWKEFEMEVVRDTADNCIIVCSIENLDPMGVHT----GDSITVAPAQTLTDKEYQRL 264

Query: 228 QRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +  + +V  +E+N 
Sbjct: 265 RDASIAVLRKIGVDTGGSNVQFGINAQTGRVVVIEMNP 302



 Score = 65.5 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 31/199 (15%), Positives = 75/199 (37%), Gaps = 8/199 (4%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYV 129
           LE   +P   +   +  L+ D+ R + +V   G+   P+ +             I  P V
Sbjct: 654 LEANGVPVIGTSPDSIDLAEDRERFQGLVDRLGLKQPPNRIARNDQQALLLAREIGYPLV 713

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLD 188
           ++P        + ++  +  +   +  +   ++   +L+++++D  +E+   ++ D    
Sbjct: 714 VRPSYVLGGRAMEIVYGESDLARYVRDAVKVSNDSPVLLDRFLDNAVEVDVDIIADKDGQ 773

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           V    V   +       +S  +S  + P  +      E++R      +A+   G+  + F
Sbjct: 774 VLIGGV--MEHIEEAGVHSGDSSCSLPPYSLSAQTQAELRRQVVELARALNVVGLMNTQF 831

Query: 249 LFDPLSRK---VFWLEINV 264
                      V+ LE+N 
Sbjct: 832 AIQAGDDGQDIVYLLEVNP 850


>gi|110680653|ref|YP_683660.1| carbamoyl phosphate synthase large subunit [Roseobacter
           denitrificans OCh 114]
 gi|109456769|gb|ABG32974.1| carbamoyl-phosphate synthase, large subunit [Roseobacter
           denitrificans OCh 114]
          Length = 1119

 Score = 72.1 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 51/268 (19%), Positives = 103/268 (38%), Gaps = 35/268 (13%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAI---- 71
           AL +AG++   I         D D S  L    L  +    ++     E+G +  +    
Sbjct: 612 ALTEAGYETIMINCNPETVSTDYDTSDRLYFEPLTFEHVMEIMRVEQ-ENGTLHGVIVQF 670

Query: 72  -----------LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTM 118
                      LE   IP   +   A  L+ D+ R +Q+V S G+    + +   +   +
Sbjct: 671 GGQTPLKLANALEEAGIPILGTTPDAIDLAEDRERFQQLVQSLGLKQPKNGIAHSDAEAL 730

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IEL 177
           +    I  P VI+P        + +++   S+   + Q+   +    +L++ Y+ G +EL
Sbjct: 731 EIAQDIGFPLVIRPSYVLGGRAMEIVRDQASLERYISQAVVVSGDSPVLLDSYLTGAVEL 790

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELK-YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
               + D     T++ V     +  E   +S  ++  + P  +  +I +EV        +
Sbjct: 791 DVDALSDG----TDVHVAGVMQHIEEAGVHSGDSACSLPPYSLKPEIIEEVTEQTHALAK 846

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINV 264
           A+   G+    F       +V+ +E+N 
Sbjct: 847 ALNVVGLMNIQFAV--KDDEVYLIEVNP 872



 Score = 55.9 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 43/291 (14%), Positives = 98/291 (33%), Gaps = 48/291 (16%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G++V  +         D +              V  ++   +PD    
Sbjct: 29  SGAQACKALKEEGYRVILVNSNPATIMTDPELADATYIEPITPEMVAKIIEKERPDALLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G  G +  +      +L+   +    +   A  ++ D+   ++ +   G+    + +
Sbjct: 89  TMGGQTGLNTSLALEEMGVLDKFNVEMIGAKREAIEMAEDRKLFREAMDRLGIENPKAAI 148

Query: 113 VN---------------RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
           V                R  +D+   +  P +I+P       G  V              
Sbjct: 149 VTAPKDANGKKDLAEGVRLALDTLEEVGLPAIIRPAFTMGGTGGGVAYNRDDYEAICRSG 208

Query: 158 SSWNHGDQLLIEQYVDG-IELTCGVMGDASL-DVTEIAVPKSDFYSYELKYSSLNSTHVL 215
              +   Q+L+++ + G  E    V+ D +   +   ++   D           +S  V 
Sbjct: 209 MDASPVGQILVDESLLGWKEFEMEVVRDTADNAIIVCSIENVDPMGVHT----GDSITVA 264

Query: 216 PA-KIPLDIYKEVQRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           PA  +    Y+ ++  +    + IG   G S   +  +P+  ++  +E+N 
Sbjct: 265 PALTLTDKEYQIMRNHSIAVLREIGVETGGSNVQWAVNPVDGRMVVIEMNP 315


>gi|9971929|gb|AAG10491.1|AF279106_53 predicted acetyl-CoA carboxylase, biotin carboxylase [uncultured
           marine gamma proteobacterium EBAC31A08]
          Length = 447

 Score = 72.1 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 31/217 (14%), Positives = 70/217 (32%), Gaps = 18/217 (8%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-----LV 113
           +G   ED     + E     +            DK+ +K +    G+ + P         
Sbjct: 82  YGFLAEDHNFAEMCEKSGFKFIGPTSETIQKMGDKITAKTLAEKSGIQIVPGYKDEIPSD 141

Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQLLIE 169
           N         I  P +IK   GG   G+ V+++++ +      +          + + +E
Sbjct: 142 NDEFKKIARDIGYPIMIKATAGGGGRGMRVVEREEDLIGHAEITMQEAKNGFGNETIYLE 201

Query: 170 QYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEV 227
           +++ +   +   ++GD       +            K          PA  I  +   + 
Sbjct: 202 KFIGNPRHIEVQIVGDGKGKAIHLGTRDCSMQRRHQK-----IIEEAPALNINQEALNKT 256

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
                   + I   G+   +FL+     + +++E+N 
Sbjct: 257 LIACVNLCEEINYEGVGTIEFLY--EDNQFYFIEMNT 291


>gi|218458182|ref|ZP_03498273.1| pyruvate carboxylase [Rhizobium etli Kim 5]
          Length = 370

 Score = 72.1 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 33/183 (18%), Positives = 70/183 (38%), Gaps = 15/183 (8%)

Query: 92  DKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKD 147
           +K+ ++ +  S GVPV P+       M         I  P ++K   GG   G+  I+  
Sbjct: 2   NKVAARNLAISVGVPVVPATEPLPDDMAEVAKMAEEIGYPVMLKASWGGGGRGMRAIRDP 61

Query: 148 QSIPLDLLQSSSWNH----GDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSY 202
           + +  ++ ++          D++ +E+ V+    +   V+GD     T   V        
Sbjct: 62  KDLAREVTEAKREAMAAFGKDEVYLEKLVERARHVESQVLGD-----THSNVVHLFERDC 116

Query: 203 ELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
            ++  +       PA  +     +E+   +     A    G    ++L D  + K +++E
Sbjct: 117 SIQRRNQKVVERAPAPYLSEAQRQELAAYSLKIAAATNYIGAGTVEYLMDADTGKFYFIE 176

Query: 262 INV 264
           +N 
Sbjct: 177 VNP 179


>gi|57867080|ref|YP_188745.1| acetyl-CoA carboxylase, biotin carboxylase [Staphylococcus
           epidermidis RP62A]
 gi|293366438|ref|ZP_06613115.1| acetyl-CoA carboxylase [Staphylococcus epidermidis M23864:W2(grey)]
 gi|57637738|gb|AAW54526.1| acetyl-CoA carboxylase, biotin carboxylase, putative
           [Staphylococcus epidermidis RP62A]
 gi|291319207|gb|EFE59576.1| acetyl-CoA carboxylase [Staphylococcus epidermidis M23864:W2(grey)]
 gi|329735326|gb|EGG71618.1| putative acetyl-CoA carboxylase, biotin carboxylase subunit
           [Staphylococcus epidermidis VCU045]
 gi|329737187|gb|EGG73441.1| putative acetyl-CoA carboxylase, biotin carboxylase subunit
           [Staphylococcus epidermidis VCU028]
          Length = 453

 Score = 72.1 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 41/220 (18%), Positives = 82/220 (37%), Gaps = 18/220 (8%)

Query: 56  NVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
           NV+H  +G   E       +E   I +         +  DK+ ++Q V   GVPV P   
Sbjct: 76  NVIHPGYGFLSESTNFAKAVEDNHIHFIGPSKTTMEMMGDKITARQTVKQAGVPVIPGSN 135

Query: 113 VNRFTMDSQHLI----SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS----WNHGD 164
               ++D   L+      P V+K   GG   GI ++K+   +   L ++ S    + + D
Sbjct: 136 DAVQSVDEIKLLSKEIGFPVVLKAASGGGGKGIRIVKEASHLDQALKEAKSEGQKYFNDD 195

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           ++ +E ++     +   ++GD   +   +            + +         A +  + 
Sbjct: 196 RVYVEAFIPVAKHVEVQIIGDGKNNYVHLGERDCSV----QRKNQKLIEEAPCAALTEER 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
              +   A    QA   R     +FL    +   +++E+N
Sbjct: 252 RTRICGDAVKVAQASRYRSAGTIEFLVTEDAH--YFIEMN 289


>gi|326913924|ref|XP_003203281.1| PREDICTED: propionyl-CoA carboxylase alpha chain,
           mitochondrial-like [Meleagris gallopavo]
          Length = 782

 Score = 72.1 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 73/221 (33%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      L    + +      A     DK+ SK +  +  V   P    
Sbjct: 192 AVHPGYGFLSENKEFARRLAAEGVTFIGPDTHAIQAMGDKIESKLLAKNAKVNTIPGFDG 251

Query: 112 LVNRFTMDS--QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGD 164
           +V            I  P +IK   GG   G+ +   D+             +SS+   D
Sbjct: 252 VVKDADEAVRIAREIGYPVMIKASAGGGGKGMRIAWDDEETREGFRFSSQEAASSFG-DD 310

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           +LLIE+++D    +   V+ D   +   +   +        K             +  + 
Sbjct: 311 RLLIEKFIDNPRHIEIQVLADKHGNALWLNERECSIQRRNQK----VVEEAPSTFLDPET 366

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +   A    +A+        +FL D      ++LE+N 
Sbjct: 367 RRAMGEQAVALAKAVKYSSAGTVEFLVDSSKN-FYFLEMNT 406


>gi|293377001|ref|ZP_06623212.1| phosphoribosylaminoimidazole carboxylase, ATPase subunit
           [Enterococcus faecium PC4.1]
 gi|292644370|gb|EFF62469.1| phosphoribosylaminoimidazole carboxylase, ATPase subunit
           [Enterococcus faecium PC4.1]
          Length = 370

 Score = 72.1 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 37/207 (17%), Positives = 83/207 (40%), Gaps = 15/207 (7%)

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTMDSQ 121
           E+  V+A+  +L + +   G    A++ D++  K  + +  + + P   +       D+ 
Sbjct: 74  ENVSVEALNAILPMSFIPQGTDLLAITQDRLLEKSFLETNNIVIAPYATIVSPTDIQDAI 133

Query: 122 HLISPPYVIKPLKGG-SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTC 179
             I  P V+K  +GG    G  V+K    +   +            ++E ++    E++ 
Sbjct: 134 DGIGYPCVLKTTRGGYDGKGQYVLKSRADLAPAMDL----LREGTCVLEAWIPFEKEISI 189

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
            V G+   D T   V ++         +++    + PA I  D+ +E +R+A +  +A+ 
Sbjct: 190 MVAGNGQGDFTTFPVVENIHR------NNILHETIAPAAIDQDVIEEAERIARVIAEAVS 243

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQP 266
             G    +         ++  E+  +P
Sbjct: 244 LSGALGVEMFLTKTGG-LYVNELAPRP 269


>gi|125811309|ref|XP_001361830.1| GA13539 [Drosophila pseudoobscura pseudoobscura]
 gi|195170426|ref|XP_002026014.1| GL10237 [Drosophila persimilis]
 gi|54637006|gb|EAL26409.1| GA13539 [Drosophila pseudoobscura pseudoobscura]
 gi|194110878|gb|EDW32921.1| GL10237 [Drosophila persimilis]
          Length = 1197

 Score = 72.1 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 30/205 (14%), Positives = 80/205 (39%), Gaps = 17/205 (8%)

Query: 69  QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLI 124
           QA+++   + +            DK+ ++      GVP+ P     +      ++   + 
Sbjct: 131 QAVID-AGLRFIGPSPKVVQNMGDKVAARVAAIEAGVPIVPGTDGPVTTKEEALEFCKMH 189

Query: 125 SPPYVIKPLKGGSSLGIIVI----KKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTC 179
             P + K   GG   G+ V+    + ++S      ++ +      + IE++++    +  
Sbjct: 190 GLPVIFKAAYGGGGRGMRVVRKMEEVEESFQRASSEAKAAFGNGAMFIEKFIERPRHIEV 249

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAI 238
            ++GD + +V  +           ++        + PA ++P+++  ++   A    + +
Sbjct: 250 QLLGDKAGNVVHLYE-----RDCSVQRRHQKVVEIAPAPRLPIELRDKMTEAAVRLARHV 304

Query: 239 GCRGISRSDFLFDPLSRKVFWLEIN 263
           G       +FL D      +++E+N
Sbjct: 305 GYENAGTVEFLCDESGN-FYFIEVN 328


>gi|119629438|gb|EAX09033.1| propionyl Coenzyme A carboxylase, alpha polypeptide, isoform CRA_b
           [Homo sapiens]
          Length = 695

 Score = 72.1 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 75/220 (34%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      L   ++ +      A     DK+ SK +     V   P    
Sbjct: 105 AVHPGYGFLSENKEFARCLAAEDVVFIGPDTHAIQAMGDKIESKLLAKKAEVNTIPGFDG 164

Query: 112 LVNRFTMDS--QHLISPPYVIKPLKGGSSLGIIVIKKDQS----IPLDLLQSSSWNHGDQ 165
           +V            I  P +IK   GG   G+ +   D+       L   +++S    D+
Sbjct: 165 VVKDAEEAVRIAREIGYPVMIKASAGGGGKGMRIAWDDEETRDGFRLSSQEAASSFGDDR 224

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           LLIE+++D    +   V+GD   +   +   +        K             +  +  
Sbjct: 225 LLIEKFIDNPRHIEIQVLGDKHGNALWLNERECSIQRRNQK----VVEEAPSIFLDAETR 280

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +   A    +A+        +FL D      ++LE+N 
Sbjct: 281 RAMGEQAVALARAVKYSSAGTVEFLVDSKKN-FYFLEMNT 319


>gi|119629437|gb|EAX09032.1| propionyl Coenzyme A carboxylase, alpha polypeptide, isoform CRA_a
           [Homo sapiens]
          Length = 501

 Score = 72.1 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 75/220 (34%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      L   ++ +      A     DK+ SK +     V   P    
Sbjct: 138 AVHPGYGFLSENKEFARCLAAEDVVFIGPDTHAIQAMGDKIESKLLAKKAEVNTIPGFDG 197

Query: 112 LVNRFTMDS--QHLISPPYVIKPLKGGSSLGIIVIKKDQS----IPLDLLQSSSWNHGDQ 165
           +V            I  P +IK   GG   G+ +   D+       L   +++S    D+
Sbjct: 198 VVKDAEEAVRIAREIGYPVMIKASAGGGGKGMRIAWDDEETRDGFRLSSQEAASSFGDDR 257

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           LLIE+++D    +   V+GD   +   +   +        K             +  +  
Sbjct: 258 LLIEKFIDNPRHIEIQVLGDKHGNALWLNERECSIQRRNQK----VVEEAPSIFLDAETR 313

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +   A    +A+        +FL D      ++LE+N 
Sbjct: 314 RAMGEQAVALARAVKYSSAGTVEFLVDSKKN-FYFLEMNT 352


>gi|72382342|ref|YP_291697.1| phosphoribosylglycinamide formyltransferase 2 [Prochlorococcus
           marinus str. NATL2A]
 gi|123773790|sp|Q46KI4|PURT_PROMT RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|72002192|gb|AAZ57994.1| formate-dependent phosphoribosylglycinamide formyltransferase
           [Prochlorococcus marinus str. NATL2A]
          Length = 387

 Score = 72.1 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 40/246 (16%), Positives = 96/246 (39%), Gaps = 27/246 (10%)

Query: 31  FKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
           F V  ++    +  V+    PD+    +         V  + E+ +         A+A++
Sbjct: 49  FNVFNMNNGSELKEVIYKCNPDIIIPEIEAL-----AVDVLKEIEQKITVIPNSRATAIT 103

Query: 91  MDKMRSKQVVSS-CGVPVCPS-ILVNRFTMD-SQHLISPPYVIKPLKGGSSLGIIVIKKD 147
           M++ + + + S+   +        VN+  +D     I  P +IKP+   S  G  ++K  
Sbjct: 104 MNRDKIRDLASNELNIRTAKFSYAVNQSELDLHAETIGYPLLIKPVMSSSGKGQSLVKNK 163

Query: 148 QSIPLD--LLQSSSWNHGDQLLIEQYVDGIELTCGVM-----GDASLDVTEIAVPKSDFY 200
             +     L    S    +++++E+++D  +L   ++        +L    I   +    
Sbjct: 164 NDLAQAWNLAIEKSRGKSNKIILEEFID-FDLEITLLTIRQSNGKTLFCAPIG-HEQKNG 221

Query: 201 SYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260
            Y+  +         PA++   + ++ Q++A      +G  G+   +F       +V + 
Sbjct: 222 DYQCSW--------QPAELTESVLEKAQQIAKRVTDNLGGVGLFGVEFFI--KGEEVIFS 271

Query: 261 EINVQP 266
           E++ +P
Sbjct: 272 ELSPRP 277


>gi|134294691|ref|YP_001118426.1| acetyl-CoA carboxylase biotin carboxylase subunit [Burkholderia
           vietnamiensis G4]
 gi|134137848|gb|ABO53591.1| acetyl-CoA carboxylase, biotin carboxylase [Burkholderia
           vietnamiensis G4]
          Length = 455

 Score = 72.1 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 79/222 (35%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H  +G   E+      +E     +         L  DK+ +KQ +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAERVEQSGFTFIGPRPDTIRLMGDKVTAKQTMIKTGVPCVPGSEG 136

Query: 113 ----VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
                 +  +     I  P +IK   GG   G+ V+  + ++   +     ++       
Sbjct: 137 ALPDDPKEIVKIARAIGYPVIIKAAGGGGGRGMRVVHTEAALVNAVNMTREEAGRAFGNP 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
           Q+ +E++++    +   V+ DA  +   +            K          PA  IP  
Sbjct: 197 QVYMEKFLENPRHIEIQVLSDAHKNAIWLGERDCSMQRRHQK-----VIEEAPAPGIPRR 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +   +      A + +G  G    +FL+   + + +++E+N 
Sbjct: 252 LIDRIGDRCADACKKMGYLGAGTFEFLY--ENNEFYFIEMNT 291


>gi|258616422|ref|ZP_05714192.1| phosphoribosylaminoimidazole carboxylase, ATPase subunit
           [Enterococcus faecium DO]
          Length = 284

 Score = 72.1 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 33/192 (17%), Positives = 76/192 (39%), Gaps = 15/192 (7%)

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTMDSQHLISPPYVIKPLKGG 136
           +   G    A++ D++  K  + +  + + P   +       D+   I  P V+K  +GG
Sbjct: 3   FIPQGTDLLAITQDRLLEKSFLETNNIVIAPYATIVSPTDIQDAIDGIGYPCVLKTTRGG 62

Query: 137 -SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAV 194
               G  V+K    +   +            ++E ++    E++  V G+   D T   V
Sbjct: 63  YDGKGQYVLKSRADLAPAMDL----LREGTCVLEAWIPFEKEISIMVAGNGQGDFTTFPV 118

Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
            ++        ++++    + PA I  D+ +E +R+A +  +A+   G+   +       
Sbjct: 119 VENIH------HNNILHETIAPAAIDQDVIEEAERIARVIAEAVSLSGVLGVEMFLTKTG 172

Query: 255 RKVFWLEINVQP 266
             ++  E+  +P
Sbjct: 173 G-LYVNELAPRP 183


>gi|126727459|ref|ZP_01743293.1| propionyl-CoA carboxylase, alpha subunit [Rhodobacterales bacterium
           HTCC2150]
 gi|126703239|gb|EBA02338.1| propionyl-CoA carboxylase, alpha subunit [Rhodobacterales bacterium
           HTCC2150]
          Length = 666

 Score = 72.1 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 72/220 (32%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      L    + +    + A     DK+ SK++    GV   P  + 
Sbjct: 77  AVHPGYGFLSENSKFAEALSAEGVAFIGPPVGAIEKMGDKITSKKIAMDAGVSTVPGYMG 136

Query: 114 NRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
                D      + I  P ++K   GG   G+ +   D            +++     D+
Sbjct: 137 LIADADEAVKISNEIGYPVMLKASAGGGGKGMRIAWNDTEAREGFQSSKNEAAKSFGDDR 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE++V     +   V+ D+  +   +   +        K             +     
Sbjct: 197 IFIEKFVTQPRHIEIQVLADSHGNCIYLGERECSIQRRNQK----VIEEAPSPFLDEATR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K +   A     A+        +F+ D   R  ++LE+N 
Sbjct: 253 KAMGEEACSLASAVDYTSAGTVEFIVDG-DRNFYFLEMNT 291


>gi|27468206|ref|NP_764843.1| acetyl-CoA carboxylase (biotin carboxylase subunit) [Staphylococcus
           epidermidis ATCC 12228]
 gi|27315752|gb|AAO04887.1|AE016748_121 acetyl-CoA carboxylase (biotin carboxylase subunit) [Staphylococcus
           epidermidis ATCC 12228]
          Length = 452

 Score = 72.1 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 41/220 (18%), Positives = 82/220 (37%), Gaps = 18/220 (8%)

Query: 56  NVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
           NV+H  +G   E       +E   I +         +  DK+ ++Q V   GVPV P   
Sbjct: 75  NVIHPGYGFLSESTNFAKAVEDNHIHFIGPSKTTMEMMGDKITARQTVKQAGVPVIPGSN 134

Query: 113 VNRFTMDSQHLI----SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS----WNHGD 164
               ++D   L+      P V+K   GG   GI ++K+   +   L ++ S    + + D
Sbjct: 135 DAVQSVDEIKLLSKEIGFPVVLKAASGGGGKGIRIVKEASHLDQALKEAKSEGQKYFNDD 194

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           ++ +E ++     +   ++GD   +   +            + +         A +  + 
Sbjct: 195 RVYVEAFIPVAKHVEVQIIGDGKNNYVHLGERDCSV----QRKNQKLIEEAPCAALTEER 250

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
              +   A    QA   R     +FL    +   +++E+N
Sbjct: 251 RTRICGDAVKVAQASRYRSAGTIEFLVTEDAH--YFIEMN 288


>gi|295836736|ref|ZP_06823669.1| acetyl/propionyl-CoA carboxylase, alpha subunit [Streptomyces sp.
           SPB74]
 gi|295826182|gb|EDY44540.2| acetyl/propionyl-CoA carboxylase, alpha subunit [Streptomyces sp.
           SPB74]
          Length = 668

 Score = 72.1 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 41/229 (17%), Positives = 79/229 (34%), Gaps = 25/229 (10%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---- 109
            +H  +G   E+           + +      A  L  DK+R+K+ V   GVPV P    
Sbjct: 82  AVHPGYGFLAENAAFARACADAGLVFIGPPADAVDLMGDKIRAKETVRLAGVPVVPGSSG 141

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
           S L +    D+   I  P ++KP  GG   G+ ++ ++  +  ++  +          D 
Sbjct: 142 SGLDDEELADAAREIGMPVLLKPSAGGGGKGMRLVHEEALLAEEIAAARREARSSFGDDT 201

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           LL+E++V     +   V  D   +V  +   +        K             +     
Sbjct: 202 LLVERWVQRPRHIEIQVFADRHGNVIHLGERECSLQRRHQK----LIEEAPSVLLDEATR 257

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLS---------RKVFWLEINV 264
             +   A  A ++ G  G    +F+                 +++E+N 
Sbjct: 258 TAMGEAAVRAARSCGYEGAGTVEFIVPGPDPDAPAGTAPEAYYFMEMNT 306


>gi|632808|gb|AAB31500.1| pyruvate carboxylase [Homo sapiens]
          Length = 1178

 Score = 72.1 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 31/233 (13%), Positives = 74/233 (31%), Gaps = 17/233 (7%)

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
            +  V      D      +G   E        +   + +            DK+ ++ + 
Sbjct: 101 DIIKVAKENNVDAVHPG-YGFLSERADFAQACQDAGVRFIGPSPEVVRKMGDKVEARAIA 159

Query: 101 SSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL---- 152
            + GVPV P     I       +  +    P + K   GG   G+ V+   + +      
Sbjct: 160 IAAGVPVVPGTDAPITSLHEAHEFSNTYGFPIIFKAAYGGGGRGMRVVHSYEELEENYTR 219

Query: 153 DLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
              ++        L +E++++    +   ++GD   ++  +            K      
Sbjct: 220 AYSEAWPAFGNGALFVEKFIEKPRHIEVQILGDQYGNILHLYERDCSIQRRHQK-----V 274

Query: 212 THVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
             + P A +   +   +   +    + +G       +FL D   +  +++E+N
Sbjct: 275 VEIAPAAHLDPQLRTRLTSDSVKLAKQVGYENAGTVEFLVDRHGKH-YFIEVN 326


>gi|266624707|ref|ZP_06117642.1| carbamoyl-phosphate synthase, large subunit [Clostridium hathewayi
           DSM 13479]
 gi|288863423|gb|EFC95721.1| carbamoyl-phosphate synthase, large subunit [Clostridium hathewayi
           DSM 13479]
          Length = 1075

 Score = 72.1 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 53/312 (16%), Positives = 112/312 (35%), Gaps = 37/312 (11%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL   G+++  +              DV          +  ++A  +PD    
Sbjct: 29  SGTQACKALRKLGYEIVLVNSNPATIMTDPETADVTYIEPLNVERLEQIIAKERPDALLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G  G +   +     ILE   +      + A     D++  K+ ++  G+ +  S +
Sbjct: 89  NLGGQSGLNLCSELNKAGILEKYNVKVIGVQVDAIERGEDRVEFKKAMNELGIEMARSEV 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     +  P V++P       G  ++     +     +    +   Q+L+E+
Sbjct: 149 AYSVDEALKIADQLGYPVVLRPAYTMGGAGGGLVYNRDELKTVCARGLQASLVGQVLVEE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQ 228
            + G  EL   ++ D+   +  +   ++      L   + +S    P   I  +  K +Q
Sbjct: 209 SILGWEELELEIVRDSEGRMITVCFIEN---IDPLGVHTGDSFCSAPMLTISPECQKRLQ 265

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
             A+   +++   G +   F  DP+S ++  +EIN +   T  S     +   G+    L
Sbjct: 266 EQAYKIVESVQVIGGTNVQFAHDPVSDRIIVIEINPR---TSRSS-ALASKATGFPIA-L 320

Query: 289 LLWMVEDASCLR 300
           +  M+     L+
Sbjct: 321 VSAMLATGLTLK 332



 Score = 57.1 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 27/197 (13%), Positives = 74/197 (37%), Gaps = 10/197 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-ILVN-RFTMDSQHLISPPYV 129
           LE   +    +      L+ D+   + ++    +P+  S + VN    +     I  P +
Sbjct: 647 LEKNGVKILGTPPSVIDLAEDRDLFRAMMEKLEIPMPESGMAVNVEEALAIAAKIGYPVM 706

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLD 188
           ++P       G+ V+  D+S+   +  +        +LI+++++  +E     + D +  
Sbjct: 707 VRPSYVLGGRGMEVVYDDESMIGYMKAAVGVTPDRPILIDRFLNHAMECEADAISDGTHA 766

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
                +   +           +S  ++P  +I  +  + ++       + +   G+   +
Sbjct: 767 FVPAVMEHIELAGVHS----GDSACIIPSVQISPENVETIKEYTRKIAEEMHVVGL--MN 820

Query: 248 FLFDPLSRKVFWLEINV 264
             +   + +V+ LE N 
Sbjct: 821 MQYAIENDRVYVLEANP 837


>gi|290962484|ref|YP_003493666.1| pyruvate carboxylase [Streptomyces scabiei 87.22]
 gi|260652010|emb|CBG75142.1| pyruvate carboxylase [Streptomyces scabiei 87.22]
          Length = 1126

 Score = 72.1 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 43/247 (17%), Positives = 82/247 (33%), Gaps = 18/247 (7%)

Query: 28  DAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87
           + G  V        V         D  +   +G   E+  +    E   I +        
Sbjct: 53  EPGHPVRAYLSVEEVMRAARLAGADAVYPG-YGFLSENPELARACEEAGITFVGPSAHIL 111

Query: 88  ALSMDKMRSKQVVSSCGVPVC----PSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIV 143
            L+ +K R+     + GVPV     PS  V+   + +   I  P  +K + GG   G+  
Sbjct: 112 ELTGNKARAVAAARAAGVPVLGSSEPSTDVDEL-VRAADGIGFPIFVKAVAGGGGRGMRR 170

Query: 144 IKKDQSIPLDLLQSSSWNH----GDQLLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSD 198
           ++   ++   +  +S           + +E+  V+   +   ++ D   +V         
Sbjct: 171 VEDPAALRESIEAASREAASAFGDPTVFLEKAVVEPRHIEVQILADGHGNVI-----HLF 225

Query: 199 FYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
                ++        + PA  +  D+   +   A    + IG R     +FL D     V
Sbjct: 226 ERDCSVQRRHQKVIELAPAPNLDPDLRDRICADAVRFAREIGYRNAGTVEFLLDRDGNHV 285

Query: 258 FWLEINV 264
           F  E+N 
Sbjct: 286 FI-EMNP 291


>gi|148273061|ref|YP_001222622.1| pyruvate carboxylase [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
 gi|147830991|emb|CAN01936.1| putative pyruvate carboxylase [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
          Length = 1133

 Score = 72.1 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 41/251 (16%), Positives = 89/251 (35%), Gaps = 22/251 (8%)

Query: 28  DAGFKVS-QIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           + G  V   +DVD  + + L     D  +   +G   E+  +        I +       
Sbjct: 53  EEGHPVRAYLDVDEIIRVAL-QCGADAIYPG-YGFLSENPDLARAAADNGIVFIGPSAGV 110

Query: 87  SALSMDKMRSKQVVSSCGVPV----CPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGII 142
             ++ +K+ +K+  ++ GVPV     PS  V    ++    I  P   K + GG   G+ 
Sbjct: 111 LEMAGNKVTAKEHATAAGVPVLASTPPSTDV-ELLLEQAEGIGFPIFAKAVAGGGGRGMR 169

Query: 143 VIKKDQSIPLDLLQS-----SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKS 197
            +++ + +   L  +     S++      L +  +    +   ++ DA+ +         
Sbjct: 170 RVERAEDLEDALRAAMREADSAFGDPTMFLEQAVLRPRHIEVQILADATGETV-----HL 224

Query: 198 DFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS-- 254
                 ++        + PA  +   I   +   A    ++IG       +FL D     
Sbjct: 225 FERDCSVQRRHQKVVEIAPAPNLDPVIRDAMHAHAIAFARSIGYVNAGTVEFLLDTDGPR 284

Query: 255 -RKVFWLEINV 264
             +  ++E+N 
Sbjct: 285 AGQHVFIEMNP 295


>gi|78044442|ref|YP_360331.1| carbamoyl-phosphate synthase large subunit [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|77996557|gb|ABB15456.1| carbamoyl-phosphate synthase, large subunit [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 1064

 Score = 72.1 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 44/278 (15%), Positives = 102/278 (36%), Gaps = 33/278 (11%)

Query: 26  LEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ------- 69
           L + G+K   I         D D S  L    L  +   N++     E  +VQ       
Sbjct: 578 LREEGYKAVIINNNPETVSTDFDTSDRLYFDPLTFEDVKNIIDHEKPEGVVVQFGGQTAI 637

Query: 70  ---AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV--PVCPSILVNRFTMDSQHLI 124
                L    I    S + A   + D+ +    ++S G+  P    +      + +   I
Sbjct: 638 NLAKPLAQAGIKLFGSSVEAIDTAEDRQKFDAFLNSLGLKRPAGKGVFAISEAVQTAKEI 697

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
             P V++P        + ++  ++ +   +  ++  +    +LI++Y++G+E+    + D
Sbjct: 698 GYPVVVRPSYVLGGRAMEIVYNEEELKNYMKWATQISPEHPVLIDRYLEGLEIEVDALAD 757

Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGI 243
                 E+ +P    +       S +S  V P   +  ++  ++          +G +G+
Sbjct: 758 GK----EVFIPGIMEHIERAGVHSGDSIAVYPTLHLDAEMIDKIYEYTCKIALGLGIKGL 813

Query: 244 SRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPE 276
               ++      +++ LE+N       P ++ ++  P 
Sbjct: 814 LNIQYVV--YENELYVLEVNPRASRTIPFLSKITGVPM 849



 Score = 66.3 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 50/287 (17%), Positives = 105/287 (36%), Gaps = 35/287 (12%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFN---------- 56
           G ++E + +   G     AL++ G++V  ++ + +  +  A++  D  +           
Sbjct: 21  GQAAEFDYA---GTQACRALKEEGYEVVLVNSNPATIMTDANI-ADRVYIEPLTVEFLEK 76

Query: 57  ------------VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVV 100
                        L G  G +  V    + IL+   +    + + A   + D+   K+ +
Sbjct: 77  VIIQEKPQGIVATLGGQAGLNLTVELFERGILQRESVQVLGTPLEAIKKAEDRELFKETM 136

Query: 101 SSCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS 158
            + G PV  S +V      +     I  P +I+P       G  +   D+       +  
Sbjct: 137 LAIGEPVPESTIVTNVEDGLSFARSIGYPVIIRPAYTLGGSGGGIAHNDEEFKEICQRGL 196

Query: 159 SWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
             +   Q+L+E+ V G  E+   V+ DA  +   I V   +       ++  +       
Sbjct: 197 KQSLIQQVLVEKSVAGWKEIEYEVLRDAMDNA--IIVCNMENIDPVGVHTGDSIVVAPSQ 254

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +    Y+ ++  +    +A+   G     F  DP S K + +E+N 
Sbjct: 255 TLSDKEYQLLRNASLKIIRALKIEGGCNVQFALDPKSFKYYVIEVNP 301


>gi|186685843|ref|YP_001869039.1| carbamoyl phosphate synthase large subunit [Nostoc punctiforme PCC
           73102]
 gi|186468295|gb|ACC84096.1| carbamoyl-phosphate synthase, large subunit [Nostoc punctiforme PCC
           73102]
          Length = 1087

 Score = 72.1 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 57/279 (20%), Positives = 102/279 (36%), Gaps = 36/279 (12%)

Query: 18  SGKACASALEDAGFKVSQID------------VDRS---------VGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++             DR+         V  V+   +PD    
Sbjct: 29  SGTQACKALREEGYEVVLVNSNPATIMTDPETADRTYIEPLTPELVEKVIEKERPDALLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G    +  V      +LE   +    + + A   + D+    + ++  GV VCPS  
Sbjct: 89  TMGGQTALNLAVALAKNGVLEKYGVELIGAKLPAIEKAEDRKLFGEAMARIGVAVCPSDT 148

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
              +      ++ + S P +I+P       G  +    +            +   Q+LI+
Sbjct: 149 AETLEEAKAVARQIGSYPLIIRPAFTMGGSGGGIAYNQEEFEEMAQVGIDASPVSQILID 208

Query: 170 QYVDG-IELTCGVMGD-ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKE 226
           Q + G  E    VM D A   V   ++   D           +S  V PA+ +    Y+ 
Sbjct: 209 QSLLGWKEYELEVMRDLADNVVIICSIENLDPMGIHT----GDSITVAPAQTLTDKEYQR 264

Query: 227 VQRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           ++ +A    + IG   G S   F  +PL+  V  +E+N 
Sbjct: 265 LRDMAIKIIREIGVETGGSNIQFAVNPLNGDVVVIEMNP 303



 Score = 50.5 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/191 (13%), Positives = 72/191 (37%), Gaps = 10/191 (5%)

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGSS 138
            +   +  ++ ++ R ++++    +   P+ +   +   +     I  P V++P      
Sbjct: 669 GTSPDSIDMAENRERFEKILQELNIAQPPNGIARSYEDALIVAKRIGYPVVVRPSYVLGG 728

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKS 197
             + ++  D  +   +  +        +LI+++++  IE+    + D +  V    + + 
Sbjct: 729 RAMEIVYSDAELERYMSFAVLIEPEHPILIDKFLENAIEVDVDAIADHTGRVVIGGIME- 787

Query: 198 DFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR- 255
             +  +    S +S   LP   +   +  +++       QA+   G+    F     S  
Sbjct: 788 --HIEQAGIHSGDSACSLPSISLSPAVLNQIRTWTVQLAQALSVVGLMNIQFAVVGASSY 845

Query: 256 --KVFWLEINV 264
             +V+ LE N 
Sbjct: 846 SPQVYILEANP 856


>gi|321315317|ref|YP_004207604.1| carbamoyl phosphate synthase large subunit [Bacillus subtilis BSn5]
 gi|320021591|gb|ADV96577.1| carbamoyl phosphate synthase large subunit [Bacillus subtilis BSn5]
          Length = 1071

 Score = 72.1 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 33/225 (14%), Positives = 79/225 (35%), Gaps = 13/225 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--QHLISPPYV 129
           L    +    + +     + D+ + +Q +   GVP                   I  P +
Sbjct: 646 LSARGVKILGTSLEDLDRAEDRDKFEQALGELGVPQPLGKTATSVDQAVSIASDIGYPVL 705

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           ++P        + ++  ++ +   +  +   N    +LI++Y+ G E+    + D    V
Sbjct: 706 VRPSYVLGGRAMEIVYHEEELLHYMKNAVKINPQHPVLIDRYLTGKEIEVDAVSDGETVV 765

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               +   +           +S  V P + +  DI K++++      + +   G+    F
Sbjct: 766 IPGIMEHIERAGVHS----GDSIAVYPPQSLTEDIKKKIEQYTIALAKGLNIVGLLNIQF 821

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +      +V+ LE+N +   T     P ++   G     L   ++
Sbjct: 822 VLSQ--GEVYVLEVNPRSSRT----VPFLSKITGIPMANLATKII 860



 Score = 66.3 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 47/297 (15%), Positives = 110/297 (37%), Gaps = 36/297 (12%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL++ G++V  ++ +                       +  ++   +PD     L G  G
Sbjct: 36  ALKEEGYEVILVNSNPATIMTDTEMADRVYIEPLTPEFLTRIIRKERPDAILPTLGGQTG 95

Query: 64  EDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
            +  V    + +L    +    + + A   + D+   + +++    PV  S +++     
Sbjct: 96  LNLAVELSERGVLAECGVEVLGTKLSAIQQAEDRDLFRTLMNELNEPVPESEIIHSLEEA 155

Query: 120 SQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IE 176
            +    I  P +++P       G  +   +  +   +      +   Q L+E+ + G  E
Sbjct: 156 EKFVSQIGFPVIVRPAYTLGGTGGGICSNETELKEIVENGLKLSPVHQCLLEKSIAGYKE 215

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAH 235
           +   VM D+      I V   +     +   + +S  V P++ +    Y+ ++ ++    
Sbjct: 216 IEYEVMRDSQDHA--IVVCNMENID-PVGIHTGDSIVVAPSQTLSDREYQLLRNVSLKLI 272

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +A+G  G        DP S + + +E+N  P ++  S     +   GY   +L   +
Sbjct: 273 RALGIEGGCNVQLALDPDSFQYYIIEVN--PRVSRSS--ALASKATGYPIAKLAAKI 325


>gi|255659175|ref|ZP_05404584.1| pyruvate carboxylase [Mitsuokella multacida DSM 20544]
 gi|260848626|gb|EEX68633.1| pyruvate carboxylase [Mitsuokella multacida DSM 20544]
          Length = 1141

 Score = 72.1 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 44/278 (15%), Positives = 95/278 (34%), Gaps = 27/278 (9%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59
           +AV     S E  +SL   +A  + L   G K     +D   +  +      D     +H
Sbjct: 31  VAV----YSKEDVLSLHRSRADEAYLVGKGKKPVDAYLDIEDIIRICKEHDVD----AIH 82

Query: 60  GNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI--LVN 114
             +G   E+  +    E   I +    +    +  DK+ ++       +P+ P     V 
Sbjct: 83  PGYGFLSENAQLAKRCEEEGIIFIGPKVEHLQMFGDKVNARIQAEKAEIPMIPGTNGAVK 142

Query: 115 RFTM--DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGDQLLI 168
            F         +  P +IK + GG   G+  + + + +         ++      + + +
Sbjct: 143 DFAEVKAFAERVGLPVMIKAINGGGGRGMRRVDRMEDLKESYEEARSEAKRAFGDEDVYV 202

Query: 169 EQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKE 226
           E+ + +   +   +MGD   +V  +            K        + PA  +P  + + 
Sbjct: 203 EKCILNPKHIEVQIMGDEHGNVIHLNERDCSIQRRHQK-----VIEMAPAWSLPKKLRQN 257

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +   A    + +        +FL D      +++E+N 
Sbjct: 258 ICAAALKIMKNVCYVNAGTVEFLADQDEEHFYFIEVNP 295


>gi|289208772|ref|YP_003460838.1| acetyl-CoA carboxylase, biotin carboxylase [Thioalkalivibrio sp.
           K90mix]
 gi|288944403|gb|ADC72102.1| acetyl-CoA carboxylase, biotin carboxylase [Thioalkalivibrio sp.
           K90mix]
          Length = 472

 Score = 72.1 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 36/251 (14%), Positives = 82/251 (32%), Gaps = 25/251 (9%)

Query: 32  KVSQIDVD--------RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
           +   I  D          +  V      D      +G   E+    A      + +    
Sbjct: 47  EAYAIGPDSMGGYLSIHRLISVARAAGCDAVHPG-YGFLSENADFAAACAARGLIWVGPD 105

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSL 139
                   DK+ ++Q +   GVPV P     +      +++   I  P ++K   GG   
Sbjct: 106 ASVIRRMGDKVAARQAMIEAGVPVTPGSEGNLETLEAALEAAEAIGYPVMLKATSGGGGR 165

Query: 140 GIIVIKKDQSIPLDL-----LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194
           GI + +   ++  +        + ++   +  L +  V+   +   ++ D   +   +  
Sbjct: 166 GIRLCEDPDALRRNFDRVRSEATRAFGSTEIFLEKAVVNPRHIEVQILADTHGNAVHLYE 225

Query: 195 PKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
                    ++        + P  ++     + +  LA  A Q +G +     +FL D  
Sbjct: 226 -----RDCSVQRRHQKLIEIAPSPQLNEAQRERLGALAVTAAQTVGYQNAGTVEFLMDG- 279

Query: 254 SRKVFWLEINV 264
               +++E+N 
Sbjct: 280 DDTFYFMEMNT 290


>gi|327392679|dbj|BAK10101.1| carbamoyl-phosphate synthase large chain CarB [Pantoea ananatis
           AJ13355]
          Length = 1076

 Score = 72.1 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 44/278 (15%), Positives = 99/278 (35%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D +              V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +    Q +LE   +    +   A   + D+ R    + S G+    S +
Sbjct: 89  TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKSIGLDTARSGI 148

Query: 113 VNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     +     +  P +I+P       G  +    +       +    +  ++LLI++
Sbjct: 149 AHTMDEALAVAADVGFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTNELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + +   +   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIEN----FDAMGIHTGDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RNASLAVLREIGVETGGSNVQFAVNPKNGRLIVIEMNP 302



 Score = 59.8 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 74/197 (37%), Gaps = 10/197 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           LE   +P   +   A   + D+ R +Q V    +    +  V      ++    I  P V
Sbjct: 654 LEAAGVPVIGTSPDAIDRAEDRERFQQAVDRLNLKQPANATVATLEQAVEKAAGIGYPLV 713

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  +  +      + S ++   +L+++++ D +E+    + D    
Sbjct: 714 VRPSYVLGGRAMEIVYDEIDLKRYFQTAVSVSNDAPVLLDRFLDDAVEVDVDAICDGERV 773

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           +    +   +    +    S +S   LPA  +  DI   +++        +  RG+    
Sbjct: 774 LIGGIMEHIE----QAGVHSGDSACSLPAYTLSQDIQNVMRQQVEKLAFELNVRGLMNVQ 829

Query: 248 FLFDPLSRKVFWLEINV 264
           F       +V+ +E+N 
Sbjct: 830 FAV--KDNEVYLIEVNP 844


>gi|325922458|ref|ZP_08184225.1| carbamoyl-phosphate synthase large subunit [Xanthomonas gardneri
           ATCC 19865]
 gi|325547078|gb|EGD18165.1| carbamoyl-phosphate synthase large subunit [Xanthomonas gardneri
           ATCC 19865]
          Length = 1080

 Score = 72.1 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 49/278 (17%), Positives = 102/278 (36%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL D G++V  +         D D            ++V  ++A  KPD    
Sbjct: 29  SGAQACKALRDEGYRVVLVNSNPATIMTDPDMADAVYIEPINWQTVEKIIAKEKPDALLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      +LE   +    +   A  ++ D+   +  +   G+    + +
Sbjct: 89  TMGGQTALNCALDLADHGVLEKYNVELIGAKREAIRMAEDRELFRVAMGEIGLDCPRAEV 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     +D Q  +  P +I+P       G  +    + +   + +    +   ++L+E+
Sbjct: 149 AHTLEEALDIQTRVGYPTIIRPSFTLGGSGGGIAYNREELIDIVGRGLELSPTTEVLVEE 208

Query: 171 YVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            V G  E    V+ D + + +   A+   D           +S  V PA+ +    Y+ +
Sbjct: 209 SVLGWKEFEMEVVRDTADNCIIVCAIENLDPMGVHT----GDSITVAPAQTLTDKEYQRL 264

Query: 228 QRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F   P + +V  +E+N 
Sbjct: 265 RDASIAVLRKIGVDTGGSNVQFGISPTNGRVVVIEMNP 302



 Score = 62.1 bits (150), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 34/223 (15%), Positives = 86/223 (38%), Gaps = 12/223 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYV 129
           LE   +P   +   +  L+ D+ R +Q+V   G+   P+ +             I  P V
Sbjct: 654 LEANGVPVIGTSPDSIDLAEDRERFQQLVDKLGLKQPPNRIARNSEEALVLAREIGYPLV 713

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLD 188
           ++P        + ++  +  +   +  +   ++   +L+++++D  +E+   ++ D   +
Sbjct: 714 VRPSYVLGGRAMEIVYGESDLARYVRDAVKVSNDSPVLLDRFLDNAVEVDVDIIADKDGN 773

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           V    +   +       +S  +S  + P  +      E++R   +  + +   G+  + F
Sbjct: 774 VLIGGL--MEHIEEAGVHSGDSSCSLPPYSLSPKTQAELRRQVVMLAEGLNVVGLMNTQF 831

Query: 249 LF---DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
                +     VF LE+N +   T     P ++   G    ++
Sbjct: 832 AVQVDEAGDDVVFLLEVNPRASRT----VPFVSKATGMPLAKI 870


>gi|302671895|ref|YP_003831855.1| hypothetical protein bpr_I2540 [Butyrivibrio proteoclasticus B316]
 gi|302396368|gb|ADL35273.1| hypothetical protein bpr_I2540 [Butyrivibrio proteoclasticus B316]
          Length = 329

 Score = 72.1 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 43/227 (18%), Positives = 92/227 (40%), Gaps = 28/227 (12%)

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-SILVNRFTMD-SQHLISPPYVIKP 132
           + +    S       S+DK +  +++   G+P     + +  F    S   +S P  +KP
Sbjct: 96  IGVTPIVSSYELCETSLDKYQMYEMLVKLGIPTAKCYLSIEDFENAMSAGEVSYPVFVKP 155

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA-SLDVTE 191
            +G +S+ I  ++  +     +L +   ++ D L+I++Y+ G E    V  D  S   T 
Sbjct: 156 RRGSASININAVESKE-----MLIALFHDYDD-LIIQEYMQGQEYGADVYIDMISGKCTS 209

Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
           I      F   ++K  +  +   +  K      + +        + +G RG+   D  +D
Sbjct: 210 I------FLKEKIKMRAGETDKSVSVKD-----ERLFEQIVSFVETVGYRGMIDIDLFYD 258

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR-ELLLWM--VED 295
             +   +  E+N + G      +P  A   G +F  +++  +  +E+
Sbjct: 259 NATDTWYLSEVNPRFG----GGYPH-AYACGVNFPRQIINNLKGIEN 300


>gi|227872121|ref|ZP_03990493.1| acetyl-CoA carboxylase [Oribacterium sinus F0268]
 gi|227842039|gb|EEJ52297.1| acetyl-CoA carboxylase [Oribacterium sinus F0268]
          Length = 449

 Score = 72.1 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 81/221 (36%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+          +I +            +K +++  +   GVPV P  L 
Sbjct: 77  AIHPGYGFLSENAQFAEKCRENDICFIGPSPEVIDGMGNKSQARAKMREAGVPVVPGSLK 136

Query: 114 N----RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP-----LDLLQSSSWNHGD 164
                +  ++    +  P +IK   GG   G+     +              +++++  D
Sbjct: 137 ALYDVKEALEEAKAMGFPVMIKASSGGGGKGMRECYSEGDFENEFLTAQRESANAFS-DD 195

Query: 165 QLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            + +E+ + +   +   +MGD+  +V  +            K    + + ++ A    + 
Sbjct: 196 AMYLEKLILEPRHVEVQIMGDSFGNVIALGERDCSIQRNHQKLVEESPSPIVTA----ES 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            K +   A  A +A+   G    +F+ D    K +++E+N 
Sbjct: 252 RKAMMEAAVNAAKAVSYVGAGTIEFIVD-QEGKFYFMEMNT 291


>gi|194383984|dbj|BAG59350.1| unnamed protein product [Homo sapiens]
          Length = 702

 Score = 72.1 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 75/220 (34%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      L   ++ +      A     DK+ SK +     V   P    
Sbjct: 112 AVHPGYGFLSENKEFARCLAAEDVVFIGPDTHAIQAMGDKIESKLLAKKAEVNTIPGFDG 171

Query: 112 LVNRFTMDS--QHLISPPYVIKPLKGGSSLGIIVIKKDQS----IPLDLLQSSSWNHGDQ 165
           +V            I  P +IK   GG   G+ +   D+       L   +++S    D+
Sbjct: 172 VVKDAEEAVRIAREIGYPVMIKASAGGGGKGMRIAWDDEETRDGFRLSSQEAASSFGDDR 231

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           LLIE+++D    +   V+GD   +   +   +        K             +  +  
Sbjct: 232 LLIEKFIDNPRHIEIQVLGDKHGNALWLNERECSIQRRNQK----VVEEAPSIFLDAETR 287

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +   A    +A+        +FL D      ++LE+N 
Sbjct: 288 RAMGEQAVALARAVKYSSAGTVEFLVDSKKN-FYFLEMNT 326


>gi|262275381|ref|ZP_06053191.1| methylcrotonyl-CoA carboxylase biotin-containing subunit [Grimontia
           hollisae CIP 101886]
 gi|262220626|gb|EEY71941.1| methylcrotonyl-CoA carboxylase biotin-containing subunit [Grimontia
           hollisae CIP 101886]
          Length = 469

 Score = 72.1 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 38/219 (17%), Positives = 80/219 (36%), Gaps = 16/219 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      +   +I +            DK R+++   + GVPV P    
Sbjct: 78  AIHPGYGFLSENARFSDDVRAADIIFVGPSGQTMTKMADKARARETAVAAGVPVVPGNAP 137

Query: 114 NRFT---MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQL 166
                  +     I  P +IK   GG   GI VI+++        Q+S+          L
Sbjct: 138 AANPDAALKQARQIGFPVMIKASAGGGGRGIRVIEQEGEFLTQYHQASAEAQSAFGDGTL 197

Query: 167 LIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
            +E+++     +   ++ D   +   +   +        K           A +P  + +
Sbjct: 198 YLEKFIRQSRHVEVQILADGE-NAVHLFERECSLQRRRQK----VWEEAPCAVLPDRVRE 252

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + + A    +++  +G    +FL+D  S   +++E+N 
Sbjct: 253 AMCQSAVSLAKSVNYKGAGTIEFLYDEESESFYFIEMNT 291


>gi|194014423|ref|ZP_03053040.1| carbamoyl-phosphate synthase, large subunit [Bacillus pumilus ATCC
           7061]
 gi|194013449|gb|EDW23014.1| carbamoyl-phosphate synthase, large subunit [Bacillus pumilus ATCC
           7061]
          Length = 1071

 Score = 72.1 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 30/221 (13%), Positives = 78/221 (35%), Gaps = 13/221 (5%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--FTMDSQHLISPPYVIKPL 133
            +    + +     + ++ + +Q + + GVP             +   + I  P +++P 
Sbjct: 650 GVKILGTSLEDLDRAENRDKFEQTLEALGVPQPKGKTATSVPEAVAIANQIGYPVLVRPS 709

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
                  + ++ ++  +   +  +   N    +LI++Y+ G E+    + D    V    
Sbjct: 710 YVLGGRAMEIVYQEAELLHYMENAVKVNPQHPVLIDKYLTGKEIEVDAVSDGETVVIPGI 769

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
           +   +           +S  V P + +  +I  ++        + +   G+    F+   
Sbjct: 770 MEHIERAGVHS----GDSIAVYPPQTLSEEIKAKIAEYTIKLAKGLNIIGLLNIQFVLSK 825

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
              +VF LE+N +   T     P ++   G     L   ++
Sbjct: 826 --GEVFVLEVNPRSSRT----VPFLSKITGIPMANLATKVI 860



 Score = 69.0 bits (168), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 49/297 (16%), Positives = 113/297 (38%), Gaps = 36/297 (12%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL++ G++V  ++ +                       +  ++   +PD     L G  G
Sbjct: 36  ALKEEGYEVVLVNSNPATIMTDTEMADKVYIEPLTPEFLTRIIRKERPDAILPTLGGQTG 95

Query: 64  EDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFT 117
            +  V+     +L    +    + + A   + D+   + +++    PV  S +++     
Sbjct: 96  LNLAVELSDLGVLAECGVEVLGTKLSAIQKAEDRDLFRNLMNELNEPVPESEIIHNLEEA 155

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IE 176
           M   + I  P +++P       G  +   +Q +   +      +   Q L+E+ + G  E
Sbjct: 156 MAFTNQIGFPVIVRPAYTLGGTGGGICTNEQELKEIVENGLKLSPVTQCLLEKSIAGFKE 215

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAH 235
           +   VM D+      I V   + +   +   + +S  V P++ +    Y+ ++ ++    
Sbjct: 216 IEYEVMRDSGDHA--IVVCNMENFD-PVGIHTGDSIVVAPSQTLSDREYQLLRNVSLKLI 272

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +A+G  G        DP S + + +E+N  P ++  S     +   GY   +L   +
Sbjct: 273 RALGIEGGCNVQLAIDPDSFQYYIIEVN--PRVSRSS--ALASKATGYPIAKLAAKI 325


>gi|326941656|gb|AEA17552.1| carbamoyl phosphate synthase large subunit [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 1072

 Score = 72.1 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 50/314 (15%), Positives = 113/314 (35%), Gaps = 37/314 (11%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQIDVD---------------------RSVGLV 45
           G ++E + S   G     +L + G+KV  ++ +                       V  +
Sbjct: 21  GQAAEFDYS---GTQACQSLREEGYKVILVNSNPATIMTDTATADKVYIEPLTLEFVSRI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   +PD     L G  G +  V+     ILE   +    + + A   + D+   + ++ 
Sbjct: 78  IRKERPDAILPTLGGQTGLNMAVELAKSGILEECGVEILGTKLSAIEQAEDRDLFRTLMQ 137

Query: 102 SCGVPVCPSILVNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
               P+  S +++      +    I  P +++P       G  +   ++ +   +     
Sbjct: 138 DLNEPIPSSTIIHTLEEAHEFVKEIGYPVIVRPAFTMGGTGGGICSNEEELIEIVSGGLK 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   Q L+E+ + G  E+   VM D++ +   I V   +       ++  +        
Sbjct: 198 HSPVTQCLLEKSIAGCKEIEYEVMRDSNDNA--IVVCNMENIDPVGVHTGDSIVVAPSQT 255

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278
           +    Y+ ++  +    +A+G  G        DP S + + +E+N  P ++  S     +
Sbjct: 256 LSDREYQMLRNTSLRIIRALGIEGGCNVQLALDPHSFQYYVIEVN--PRVSRSS--ALAS 311

Query: 279 AYAGYSFRELLLWM 292
              GY   +L   +
Sbjct: 312 KATGYPIAKLAAKI 325



 Score = 65.9 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 26/221 (11%), Positives = 80/221 (36%), Gaps = 20/221 (9%)

Query: 68  VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLIS 125
           + A LE   +    + +     + D+ + +  ++  G+P             +     I 
Sbjct: 642 LAAKLEAHGVKILGTSLEDLDRAEDRDKFEAALTKLGIPQPVGKTATTVEQAVAIAEEIG 701

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            P +++P        + ++ + + +   +  +   +    +LI++Y+ G E+    + D 
Sbjct: 702 YPVLVRPSYVLGGRAMEIVYRQEELLHYMKNAVKVHADHPVLIDRYMVGKEIEVDAISDG 761

Query: 186 S---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCR 241
               +      + ++  +S        +S  V P + +   + +++        + +   
Sbjct: 762 ENVFIPGIMEHIERAGVHS-------GDSIGVYPPQSLSEKLKEQIIEHTIALGKGLNIV 814

Query: 242 GISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277
           G+    F+      +V+ +E+N       P ++ ++  P  
Sbjct: 815 GLLNIQFVVFK--DQVYVIEVNPRASRTVPFLSKITGVPMA 853


>gi|325687612|gb|EGD29633.1| carbamoyl-phosphate synthase, large subunit [Streptococcus
           sanguinis SK72]
          Length = 1059

 Score = 72.1 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 23/224 (10%), Positives = 72/224 (32%), Gaps = 11/224 (4%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYV 129
           L    +    + +     + D+   +Q +    +P  P           ++   I  P +
Sbjct: 646 LSKAGVKILGTQVADLDRAEDRDLFEQALKELDIPQPPGQTATNEEEAVEAARKIGFPVL 705

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           ++P        + +++ +  +   +  +   +    +L++ Y+ G E     + D    +
Sbjct: 706 VRPSYVLGGRAMEIVENEADLRSYMRTAVKASPDHPVLVDSYIVGDECEVDAISDGCQVL 765

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
               +   +       +S  +     P  +   +   +          + C G+    F+
Sbjct: 766 IPGIMEHIERAGV---HSGDSMAAYPPQTLSQKVKDTIADYTKRLALGLNCIGMMNIQFV 822

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
                 +V+ +E+N +   T     P ++        ++   ++
Sbjct: 823 I--KDEQVYVIEVNPRASRT----VPFLSKVTDIPMAQVATRLI 860



 Score = 65.9 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 37/206 (17%), Positives = 78/206 (37%), Gaps = 9/206 (4%)

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147
           + D+   KQ++   G P+  S +VN     ++    I  P +++P       G  +   +
Sbjct: 126 AEDRDLFKQLMEELGQPIPESEIVNTVDEALEFAAGIGYPVIVRPAFTLGGTGGGICSNE 185

Query: 148 QSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
           + +          +   Q LIE+ + G  E+   VM D + +   + V   + +     +
Sbjct: 186 EELQEIAENGLKLSPVTQCLIERSIAGFKEIEYEVMRDGADNA--LVVCNMENFDPVGIH 243

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
           +  +        I    Y+ ++  +    +A+   G        DP S K + +E+N  P
Sbjct: 244 TGDSIVFAPSQTISDYEYQMLRDASLKIIRALKIEGGCNVQLALDPHSFKYYVIEVN--P 301

Query: 267 GMTPVSIFPEMAAYAGYSFRELLLWM 292
            ++  S     +   GY   +L   +
Sbjct: 302 RVSRSS--ALASKATGYPIAKLAAKI 325


>gi|324992755|gb|EGC24675.1| carbamoyl-phosphate synthase, large subunit [Streptococcus
           sanguinis SK405]
 gi|324994599|gb|EGC26512.1| carbamoyl-phosphate synthase, large subunit [Streptococcus
           sanguinis SK678]
          Length = 1059

 Score = 72.1 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 23/224 (10%), Positives = 72/224 (32%), Gaps = 11/224 (4%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYV 129
           L    +    + +     + D+   +Q +    +P  P           ++   I  P +
Sbjct: 646 LSKAGVKILGTQVADLDRAEDRDLFEQALKELDIPQPPGQTATNEEEAVEAARKIGFPVL 705

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           ++P        + +++ +  +   +  +   +    +L++ Y+ G E     + D    +
Sbjct: 706 VRPSYVLGGRAMEIVENEADLRSYMRTAVKASPDHPVLVDSYIVGDECEVDAISDGCQVL 765

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
               +   +       +S  +     P  +   +   +          + C G+    F+
Sbjct: 766 IPGIMEHIERAGV---HSGDSMAAYPPQTLSQKVKDTIADYTKRLALGLNCIGMMNIQFV 822

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
                 +V+ +E+N +   T     P ++        ++   ++
Sbjct: 823 I--KDEQVYVIEVNPRASRT----VPFLSKVTDIPMAQVATRLI 860



 Score = 65.9 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 37/206 (17%), Positives = 78/206 (37%), Gaps = 9/206 (4%)

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147
           + D+   KQ++   G P+  S +VN     ++    I  P +++P       G  +   +
Sbjct: 126 AEDRDLFKQLMEELGQPIPESEIVNTVDEALEFAAGIGYPVIVRPAFTLGGTGGGICSNE 185

Query: 148 QSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
           + +          +   Q LIE+ + G  E+   VM D + +   + V   + +     +
Sbjct: 186 EELQEIAENGLKLSPVTQCLIERSIAGFKEIEYEVMRDGADNA--LVVCNMENFDPVGIH 243

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
           +  +        I    Y+ ++  +    +A+   G        DP S K + +E+N  P
Sbjct: 244 TGDSIVFAPSQTISDYEYQMLRDASLKIIRALKIEGGCNVQLALDPHSFKYYVIEVN--P 301

Query: 267 GMTPVSIFPEMAAYAGYSFRELLLWM 292
            ++  S     +   GY   +L   +
Sbjct: 302 RVSRSS--ALASKATGYPIAKLAAKI 325


>gi|313669082|ref|YP_004049366.1| acetyl-CoA carboxylase biotin carboxylase component [Neisseria
           lactamica ST-640]
 gi|309379476|emb|CBX21842.1| acetyl-CoA carboxylase, biotin carboxylase [Neisseria lactamica
           Y92-1009]
 gi|313006544|emb|CBN88008.1| putative acetyl-CoA carboxylase biotin carboxylase component
           [Neisseria lactamica 020-06]
          Length = 453

 Score = 72.1 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 39/222 (17%), Positives = 79/222 (35%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         L  DK+ +K  + + GVP  P    
Sbjct: 77  AVHPGYGFLAENADFAEQVEQSGFTFIGPKPDTIRLMGDKVSAKHAMIAAGVPCVPGSDG 136

Query: 112 LVNRFTMD---SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
            +     +       +  P +IK   GG   G+ V++K + +   +     ++ +     
Sbjct: 137 ALPDNDAEILKIADKVGYPVIIKASGGGGGRGMRVVEKKEDLLQSVEMTKAEAGAAFGNP 196

Query: 165 QLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+Y+     +   V+ D   +   +A           K          PA  I   
Sbjct: 197 MVYMERYLQRPRHVEIQVIADEHGNAVYLAERDCSMQRRHQK-----VIEEAPAPFITEK 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              ++ +    A + IG RG    +FL+     + F++E+N 
Sbjct: 252 ERAKIGKACADACKRIGYRGAGTFEFLY--EDGEFFFIEMNT 291


>gi|303245119|ref|ZP_07331436.1| phosphoribosylglycinamide formyltransferase 2 [Methanothermococcus
           okinawensis IH1]
 gi|302484528|gb|EFL47475.1| phosphoribosylglycinamide formyltransferase 2 [Methanothermococcus
           okinawensis IH1]
          Length = 389

 Score = 72.1 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 36/248 (14%), Positives = 88/248 (35%), Gaps = 22/248 (8%)

Query: 31  FKVSQIDVDR--SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
            +   +D+    ++  ++    PD     +     E   +  + E   I        A+ 
Sbjct: 53  HRSYIVDMKDGDALREIIEKEVPDYIIPEIEAINTE--TLIEMEEFGNI--VVPNASATK 108

Query: 89  LSMDKMRSKQVVSS-CGVPVCPSILVNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVIK 145
           ++MD+   +++ +    +               D+   I  P V+KP+   S  G  ++K
Sbjct: 109 ITMDREAIRRLAAEKLNLKTAKYEFAESLDELKDAVSKIGMPCVVKPIMSSSGKGQSIVK 168

Query: 146 KDQSIPLDL--LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYE 203
            ++ I        SS+   G ++++E++++  +    ++   + +  +   P        
Sbjct: 169 SEKDIEKAWNHATSSARGIGTKVIVEEFIE-FDYEITLLTAKTEEGIKFCPPIGHIQI-- 225

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
                       P  +  +     Q +A+     +G RGI   +        +V + E++
Sbjct: 226 ---DGDYHESWQPHPMSEETLIRAQDMAYKITSMLGGRGIFGVELFV--KGDEVIFSEVS 280

Query: 264 VQP---GM 268
            +P   GM
Sbjct: 281 PRPHDTGM 288


>gi|261884723|ref|ZP_06008762.1| biotin carboxylase [Campylobacter fetus subsp. venerealis str.
           Azul-94]
          Length = 257

 Score = 72.1 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 37/181 (20%), Positives = 73/181 (40%), Gaps = 10/181 (5%)

Query: 50  KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109
           + D  F   +G   E+     I     I +    + A AL  DK ++KQV+   G+PV P
Sbjct: 76  EADAIFPG-YGFLSENQNFVEICSKHNIKFIGPSVAAMALMSDKSKAKQVMMRAGIPVVP 134

Query: 110 SILVNRFTMDSQHLI----SPPYVIKPLKGGSSLGIIVIKKDQSIPL----DLLQSSSWN 161
               +   +D+   +      P ++K   GG   G+ V+++++ +         ++ S  
Sbjct: 135 GSDGSIQDIDAAKKLAREIGYPIIVKAAAGGGGRGMRVVEREEDLEKSFWSAESEAMSAF 194

Query: 162 HGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
               + +E+Y+ +   +   V+GD   +V  I   +  +     K     S  +L  K+ 
Sbjct: 195 GDGTMYMEKYILNPRHIEVQVLGDEHWNVVHIGRTRLFYAXTSSKTYRRESCRILDDKLE 254

Query: 221 L 221
            
Sbjct: 255 P 255


>gi|221108184|ref|XP_002162620.1| PREDICTED: similar to Methylcrotonoyl-Coenzyme A carboxylase 1
           (alpha), partial [Hydra magnipapillata]
          Length = 619

 Score = 72.1 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 42/222 (18%), Positives = 82/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H  +G   E      + E  E+ +      A      K  SK+++ S GVP+      
Sbjct: 249 AIHPGYGFLSEKPEFANLCEKNEVIFIGPPSSAIRDMGIKSTSKEIMGSAGVPLIKGYHG 308

Query: 113 ---VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS-----SWNHGD 164
               N F  +    I  P ++K ++GG   G+ ++         L  +      ++    
Sbjct: 309 DNQSNEFLKEQALKIGYPVMLKAVRGGGGKGMRIVTNPSDFETSLQSARNESLKAFG-DS 367

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            +LIEQ++     +   V  D   +   +           ++          PA  +  +
Sbjct: 368 NMLIEQFIKKPRHVEVQVFADKYGNTVYL-----FERDCSVQRRHQKIIEEAPAPHMSEE 422

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           I K++   A  A +A+G  G    +F+FD      +++E+N 
Sbjct: 423 IRKKLGDAAVKAAKAVGYVGAGTVEFIFDEEGN-FYFMEMNT 463


>gi|264680220|ref|YP_003280130.1| acetyl-CoA carboxylase, biotin carboxylase [Comamonas testosteroni
           CNB-2]
 gi|299533093|ref|ZP_07046478.1| acetyl-CoA carboxylase, biotin carboxylase [Comamonas testosteroni
           S44]
 gi|262210736|gb|ACY34834.1| acetyl-CoA carboxylase, biotin carboxylase [Comamonas testosteroni
           CNB-2]
 gi|298718870|gb|EFI59842.1| acetyl-CoA carboxylase, biotin carboxylase [Comamonas testosteroni
           S44]
          Length = 452

 Score = 71.7 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 40/226 (17%), Positives = 81/226 (35%), Gaps = 29/226 (12%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+      +E     +            DK+ +KQ +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAERVEKSGFTFIGPTPENIRTMGDKVSAKQAMIKAGVPCVPGSDG 136

Query: 111 ------ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSW 160
                  L+ R        I  P +IK   GG   G+ V+  + ++   +     ++ + 
Sbjct: 137 ELPDDPALIKR----IAKTIGYPVIIKASGGGGGRGMRVVHTEAALINAVQMTKAEAGAA 192

Query: 161 NHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK- 218
                + +E+Y+ +   +   V+ D   +   +            K          PA  
Sbjct: 193 FGNPAVYMEKYLQNPRHVEIQVLADTHKNAVYLGERDCSMQRRHQK-----VIEEAPAPG 247

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           IP  + +++      A + IG RG    +FL+   + + +++E+N 
Sbjct: 248 IPRRLIEKIGERCAAACKKIGYRGAGTFEFLY--ENGEFYFIEMNT 291


>gi|222086079|ref|YP_002544611.1| acetyl-CoA carboxylase, biotin carboxylase [Agrobacterium
           radiobacter K84]
 gi|221723527|gb|ACM26683.1| acetyl-CoA carboxylase, biotin carboxylase [Agrobacterium
           radiobacter K84]
          Length = 674

 Score = 71.7 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 73/220 (33%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E       LE   I +      A     DK+ SK+  ++  V   P  L 
Sbjct: 82  AVHPGYGFLSERASFCEALEKEGIIFIGPKPKAIKAMGDKIESKKFANAAKVSTVPGYLG 141

Query: 114 NRFTMDSQHL----ISPPYVIKPLKGGSSLGIIVIKKDQS----IPLDLLQSSSWNHGDQ 165
                D        I  P +IK   GG   G+ +                ++ S    D+
Sbjct: 142 VIDDADHAEKIAGEIGYPVMIKASAGGGGKGMRIAWSKDEVRDGFDRARSEAKSSFGDDR 201

Query: 166 LLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE++ VD   +   V+ D   +V  +   +        K     +       +     
Sbjct: 202 VFIEKFVVDPRHIEIQVLADGHGNVVYLGERECSIQRRNQK----VAEEAPSPFLDEATR 257

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K +   +    +A+  +     +F+ D   R  ++LE+N 
Sbjct: 258 KAMGEQSVALAKAVDYQSAGTVEFIVD-RDRNFYFLEMNT 296


>gi|159488654|ref|XP_001702320.1| hypothetical protein CHLREDRAFT_194764 [Chlamydomonas reinhardtii]
 gi|158271225|gb|EDO97050.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 894

 Score = 71.7 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 37/208 (17%), Positives = 63/208 (30%), Gaps = 57/208 (27%)

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-----------DSQH 122
           +L +PYT + +        K+  K      GV V   + +                 S  
Sbjct: 6   VLNLPYTGANLPF--YEPSKIEMKMAAQYYGVQVPAWVHIESAEDMEAGLAEVLAPPSMG 63

Query: 123 LISPPYVIKPLKGGSSLGI---IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
            +  P ++K   G  S+G+     +  +Q +   +            LIE+++ G E T 
Sbjct: 64  GLGFPLIVKHPSGYGSVGMTKDSKVTNEQQLREQVSLLV--QQFGGALIEEFISGREFTV 121

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
                          P  DF  ++LK++   S    P                       
Sbjct: 122 LCAFG----------PGEDFKHFDLKWNDYESLSWRP----------------------- 148

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPG 267
                  DF  D  + ++  LEIN   G
Sbjct: 149 ------CDFRVDGATGEIHLLEINPNCG 170


>gi|138894679|ref|YP_001125132.1| carbamoyl phosphate synthase large subunit [Geobacillus
           thermodenitrificans NG80-2]
 gi|134266192|gb|ABO66387.1| Carbamoyl-phosphate synthase, large subunit [Geobacillus
           thermodenitrificans NG80-2]
          Length = 1065

 Score = 71.7 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 32/218 (14%), Positives = 80/218 (36%), Gaps = 14/218 (6%)

Query: 68  VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC--PSILVNRFTMDSQHLIS 125
           + A LE   +    + +     + D+ + +QV+S  G+P     + +     +     I 
Sbjct: 642 LAAELEARGVRLLGTTLEDLDRAEDRDKFEQVLSELGIPKPAGKTAVSVEEAVAIAEEIG 701

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            P +++P        + ++   + +   +  +   N    +LI++Y+ G E+    + D 
Sbjct: 702 YPVLVRPSYVLGGRAMEIVYGQEELLHYMEHAVRVNPQHPVLIDRYITGKEVEVDAISDG 761

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGIS 244
              V    +   +           +S  V P + +  D+ +++        + +   G+ 
Sbjct: 762 ETVVIPGIMEHIERAGVHS----GDSIAVYPPQTLSADVIEKIVDYTVKLARGLRIVGLL 817

Query: 245 RSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277
              F+       V+ LE+N       P ++ ++  P  
Sbjct: 818 NIQFVISDSD--VYVLEVNPRSSRTVPFLSKITGVPMA 853



 Score = 70.2 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 54/297 (18%), Positives = 115/297 (38%), Gaps = 36/297 (12%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL++ G+KV  ++ +                       V  ++   +PD     L G  G
Sbjct: 36  ALKEEGYKVILVNSNPATIMTDTEIADKVYMEPLTFEFVARIIRKERPDAILPTLGGQTG 95

Query: 64  EDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFT 117
            +  VQ     +LE   +    + + A   + D+ + + +++  G PV  S +V+     
Sbjct: 96  LNLAVQLAKAGVLEECGVEILGTKLEAIEKAEDREQFRALMNELGEPVPESAIVHSLEEA 155

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IE 176
            +    I  P +++P       G  +   ++ +   +      +   Q L+E+ + G  E
Sbjct: 156 YEFVQQIGYPVIVRPAFTLGGTGGGICTNEEELIDIVSTGLKMSPVHQCLLERSIAGYKE 215

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAH 235
           +   VM DA+ +   I V   +     +   + +S  V P++ +    Y+ ++  +    
Sbjct: 216 IEYEVMRDANDNA--IVVCNMENID-PVGIHTGDSIVVAPSQTLSDREYQLLRNASLNII 272

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +A+G  G        DP S + + +E+N  P ++  S     +   GY   +L   +
Sbjct: 273 RALGIEGGCNVQLALDPDSFRYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAKI 325


>gi|17231301|ref|NP_487849.1| carbamoyl phosphate synthase large subunit [Nostoc sp. PCC 7120]
 gi|22095512|sp|Q8YQL2|CARB_ANASP RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|17132943|dbj|BAB75508.1| carbamoyl phosphate synthetase large chain [Nostoc sp. PCC 7120]
          Length = 1104

 Score = 71.7 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 55/279 (19%), Positives = 105/279 (37%), Gaps = 36/279 (12%)

Query: 18  SGKACASALEDAGFKVSQID------------VDRS---------VGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++             DR+         V  V+A  +PD    
Sbjct: 29  SGTQACKALREEGYEVVLVNSNPATIMTDPETADRTYIEPLTPELVEKVIARERPDALLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  V      +L+   +    + + A   + D+    + +   GV VCPS  
Sbjct: 89  TMGGQTALNIAVALAKNGVLDQYNVELIGAKLPAIEKAEDRKLFNEAMDKIGVKVCPSGT 148

Query: 113 ---VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
              ++     ++ + + P +I+P       G  +    +            +   Q+LI+
Sbjct: 149 ASSLDESKAIARRIGTYPLIIRPAFTMGGTGGGIAYNQEEFEEMAQVGIDASPVSQILID 208

Query: 170 QYVDG-IELTCGVMGDASLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPAK-IPLDIYKE 226
           Q + G  E    VM D + +V  I   ++ D           +S  V PA+ +    Y+ 
Sbjct: 209 QSLLGWKEYELEVMRDLADNVVIICSIENIDPMGIHT----GDSITVAPAQTLTDKEYQR 264

Query: 227 VQRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           ++ +A    + IG   G S   F  +P++  V  +E+N 
Sbjct: 265 LRDMAIKIIREIGVETGGSNIQFAVNPVNGDVVVIEMNP 303



 Score = 47.8 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/215 (14%), Positives = 79/215 (36%), Gaps = 14/215 (6%)

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGSS 138
            +   +   + D+ R ++++    +   P+ +   +   +     I  P V++P      
Sbjct: 687 GTSPDSIDSAEDRERFEKILQKLNISQPPNGIARSYEDALIVAKRIGYPVVVRPSYVLGG 746

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKS 197
             + ++  D  +   +  +        +LI+++++  IE+    + D +  V    + + 
Sbjct: 747 RAMEIVYSDTELERYMTFAVQVEPEHPILIDKFLENAIEVDVDAIADHTGRVVIGGIME- 805

Query: 198 DFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF---DPL 253
             +  +    S +S   LP   +P  +  +++       Q +   G+    F        
Sbjct: 806 --HIEQAGIHSGDSACSLPSISLPPAVLNQIRTWTVQLAQELSVVGLMNIQFAVIGASSY 863

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           S +V+ LE N +   T     P ++   G    +L
Sbjct: 864 SPQVYILEANPRASRT----VPFVSKATGVPLAKL 894


>gi|315658198|ref|ZP_07911070.1| acetyl-CoA carboxylase, biotin carboxylase [Staphylococcus
           lugdunensis M23590]
 gi|315496527|gb|EFU84850.1| acetyl-CoA carboxylase, biotin carboxylase [Staphylococcus
           lugdunensis M23590]
          Length = 452

 Score = 71.7 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 38/216 (17%), Positives = 81/216 (37%), Gaps = 15/216 (6%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-SILVNRFT 117
           +G   E+G    + E  ++ +      +      K  +K  + +  VPV P S  + +  
Sbjct: 82  YGFLAENGDFAELCEACQLKFIGPSFESIQKMGIKDVAKAEMIAANVPVVPGSEGLLQSI 141

Query: 118 MDSQHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGDQLLIE 169
            D++ +   I  P +IK   GG   GI V + DQ +            +++ +G   L E
Sbjct: 142 DDAKQIANHIGYPVIIKATAGGGGKGIRVARNDQELEKGYKMTQQEAETAFGNGGLYL-E 200

Query: 170 QYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           ++++    +   ++GD    V  +            +             +     +E+ 
Sbjct: 201 KFIENFRHIEIQIIGDQFGHVVHLGERDCTI----QRRMQKLVEESPSPILTEAKREEMG 256

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             A  A QA+        +F++D    + +++E+N 
Sbjct: 257 AAAVRAAQAVNYENAGTVEFIYDLDDDQFYFMEMNT 292


>gi|167042395|gb|ABZ07122.1| putative carbamoyl-phosphate synthase L chain, ATP binding domain
           protein [uncultured marine crenarchaeote
           HF4000_ANIW97P9]
          Length = 496

 Score = 71.7 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 82/220 (37%), Gaps = 19/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     + E  ++ +      +  L  DK + K  +    VP+ P    
Sbjct: 77  AVHPGYGFLSENSEFAGLCEKNKVTFIGPSAASMDLCGDKQQCKAAMLKAKVPIVPGSPD 136

Query: 111 ILVNRFTMDS-QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
           ++ +    +   + I  P ++K + GG   GI ++  DQ +         +S +      
Sbjct: 137 LVKDADEAEKIANEIGYPVMLKSVYGGGGRGIRIVNTDQELQDAYEIVTGESIAAVGKSA 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDI 223
           +L+E+++     +   +  D   +   I   +        K          P+ I   + 
Sbjct: 197 ILVEKFLAQTRHIEYQLARDKHGNAVHIFERECSIQRRNQKL-----IEQTPSPIVDQET 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
              + +L   A +A+    +  ++F     + + ++LEIN
Sbjct: 252 RDRIGKLVVNAAEAVDYTNLGTAEF-LRADNGEFYFLEIN 290


>gi|163803828|ref|ZP_02197678.1| acetyl-CoA carboxylase subunit A [Vibrio sp. AND4]
 gi|159172371|gb|EDP57248.1| acetyl-CoA carboxylase subunit A [Vibrio sp. AND4]
          Length = 446

 Score = 71.7 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 37/223 (16%), Positives = 79/223 (35%), Gaps = 21/223 (9%)

Query: 56  NVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111
             +H  +G   E+      +E     +         +  DK+ +   +   GVP  P   
Sbjct: 76  IAIHPGYGFLSENADFAEQVERSGFIFVGPKADTIRMMGDKVSAINAMKKAGVPCVPGSD 135

Query: 112 --LVNRFTMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHG 163
             L +    +  H   I  P +IK   GG   G+ V++ +  +   +     ++ +    
Sbjct: 136 GPLDDDEDKNKAHAKRIGYPVIIKASGGGGGRGMRVVRSEAELVEAIAMTRAEAKAAFDN 195

Query: 164 DQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPL 221
           D + +E++++    +   ++ D       +            K          PA  I  
Sbjct: 196 DMVYMEKFLENPRHVEVQIIADGQGGAIHLGERDCSMQRRHQK-----VVEEAPAPGITE 250

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           ++ K +      A   IG RG    +FL+   + + +++E+N 
Sbjct: 251 EMRKYIGERCTRACLEIGYRGAGTFEFLY--ENGEFYFIEMNT 291


>gi|11992991|gb|AAF04493.2|AF157612_1 acetyl-CoA carboxylase 1 precursor [Toxoplasma gondii]
          Length = 2564

 Score = 71.7 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 42/242 (17%), Positives = 85/242 (35%), Gaps = 29/242 (11%)

Query: 48  HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV 107
             K D  +    G+  E+  +   L  L I +        A   DK+ +  +  + GVP 
Sbjct: 421 QEKVDAVWPG-WGHASENPNLPRRLSELGITFIGPSATVMAALGDKIAANILAQTAGVPS 479

Query: 108 CPSI------------LVNRFTMDS------------QHLISPPYVIKPLKGGSSLGIIV 143
            P               + R   D                I  P +IK  +GG   GI +
Sbjct: 480 IPWSGDSLKATLDSTGAIPRDIFDQATVKSVEECEKVADRIGYPMMIKASEGGGGKGIRM 539

Query: 144 IKKDQSIPLDLLQSSSWNHGDQL-LIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSY 202
           + + + +     Q  +   G  + +++       +   ++GD       ++       S 
Sbjct: 540 VDRKEQVRGAYEQVVAEVPGSPVFMMQLCTAARHIEVQIVGDEDGQAVALS---GRDCST 596

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
           + ++  +         +P    KE+++ A    Q++G  G    ++L++    K F+LE+
Sbjct: 597 QRRFQKIFEEAPPTTVVPPHTMKEMEKAAQRLTQSLGYVGAGTVEYLYNRKDDKFFFLEL 656

Query: 263 NV 264
           N 
Sbjct: 657 NP 658


>gi|323351423|ref|ZP_08087079.1| exopolyphosphatase [Streptococcus sanguinis VMC66]
 gi|322122647|gb|EFX94358.1| exopolyphosphatase [Streptococcus sanguinis VMC66]
          Length = 1059

 Score = 71.7 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 23/224 (10%), Positives = 73/224 (32%), Gaps = 11/224 (4%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYV 129
           L    +    + +     + D+   +Q +    +P  P           ++   I  P +
Sbjct: 646 LSKAGVKILGTQVADLDRAEDRDLFEQALKELDIPQPPGQTATNEEEAVEAARKIGFPVL 705

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           ++P        + +++ + ++   +  +   +    +L++ Y+ G E     + D    +
Sbjct: 706 VRPSYVLGGRAMEIVENEAALRSYMRTAVKASPDHPVLVDSYIVGDECEVDAISDGCQVL 765

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
               +   +       +S  +     P  +   +   +          + C G+    F+
Sbjct: 766 IPGIMEHIERAGV---HSGDSMAAYPPQTLSQKVKDTIADYTKRLALGLNCIGMMNIQFV 822

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
                 +V+ +E+N +   T     P ++        ++   ++
Sbjct: 823 I--KDEQVYVIEVNPRASRT----VPFLSKVTDIPMAQVATRLI 860



 Score = 65.9 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 37/206 (17%), Positives = 78/206 (37%), Gaps = 9/206 (4%)

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147
           + D+   KQ++   G P+  S +VN     ++    I  P +++P       G  +   +
Sbjct: 126 AEDRDLFKQLMEELGQPIPESEIVNTVDEALEFAAGIGYPVIVRPAFTLGGTGGGICSNE 185

Query: 148 QSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
           + +          +   Q LIE+ + G  E+   VM D + +   + V   + +     +
Sbjct: 186 EELQEIAENGLKLSPVTQCLIERSIAGFKEIEYEVMRDGADNA--LVVCNMENFDPVGIH 243

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
           +  +        I    Y+ ++  +    +A+   G        DP S K + +E+N  P
Sbjct: 244 TGDSIVFAPSQTISDYEYQMLRDASLKIIRALKIEGGCNVQLALDPHSFKYYVIEVN--P 301

Query: 267 GMTPVSIFPEMAAYAGYSFRELLLWM 292
            ++  S     +   GY   +L   +
Sbjct: 302 RVSRSS--ALASKATGYPIAKLAAKI 325


>gi|289434638|ref|YP_003464510.1| acetyl-CoA carboxylase, biotin carboxylase [Listeria seeligeri
           serovar 1/2b str. SLCC3954]
 gi|289170882|emb|CBH27424.1| acetyl-CoA carboxylase, biotin carboxylase [Listeria seeligeri
           serovar 1/2b str. SLCC3954]
          Length = 454

 Score = 71.7 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 81/220 (36%), Gaps = 16/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     + E   I +      A +    K  +++ +   GVP+ P    
Sbjct: 77  AVHPGYGFLAENADFAELCEDCNITFIGPSAAAISQMGTKDVARETMRKAGVPIVPGSQG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
            +            I  P +IK   GG   GI V + ++ +   +     ++ +      
Sbjct: 137 IVADVEDGKKIAKKIGYPVIIKATAGGGGKGIRVAENEEKLISGIQTTQQEAEAAFGDPG 196

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+Y+     +   V+ D   +V  +            K    + +   PA I     
Sbjct: 197 VYLEKYIQDFRHVEIQVLADNHGNVIHLGERDCSIQRRLQKLIEESPS---PA-IDEKTR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +++ + A  A +A+   G    +F+FD      +++E+N 
Sbjct: 253 QKMGKAAVKAAKAVNYSGAGTIEFIFDHHENNFYFMEMNT 292


>gi|254439745|ref|ZP_05053239.1| Carbamoyl-phosphate synthase L chain, ATP binding domain protein
           [Octadecabacter antarcticus 307]
 gi|198255191|gb|EDY79505.1| Carbamoyl-phosphate synthase L chain, ATP binding domain protein
           [Octadecabacter antarcticus 307]
          Length = 644

 Score = 71.7 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 77/225 (34%), Gaps = 23/225 (10%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      +    + +      A      K R+K ++   GVPV P    
Sbjct: 77  AIHPGYGFLSENPDFVDAVTAAGLIFVGPSADAIRAMGLKDRAKALMIKAGVPVVPGYHG 136

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKK----DQSIPLDLLQSSSWNHGDQ 165
                D        I  P +IK + GG   G+ + +     D+ +     +S +    D 
Sbjct: 137 TEQDDDLLRGEADKIGYPVMIKAVAGGGGKGMRLAETALDFDEQLASARAESRNAFGNDA 196

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           +LIE+++     +   + GD    V              L+          PA  +   +
Sbjct: 197 VLIEKFITAPRHIEVQIFGDGVQAV------HLFERDCSLQRRHQKVIEEAPAPGMTDAV 250

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLS----RKVFWLEINV 264
              +   A  A +AIG  G    +F+ D          +++E+N 
Sbjct: 251 RDAMGAAAVKAAKAIGYSGAGTVEFIVDGSGPLRTDGFWFMEMNT 295


>gi|218295540|ref|ZP_03496353.1| carbamoyl-phosphate synthase, large subunit [Thermus aquaticus
           Y51MC23]
 gi|218244172|gb|EED10698.1| carbamoyl-phosphate synthase, large subunit [Thermus aquaticus
           Y51MC23]
          Length = 1030

 Score = 71.7 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 55/289 (19%), Positives = 102/289 (35%), Gaps = 38/289 (13%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI---------DVD------------RSVGLV 45
           G ++E + S   G     AL  AG++   +         D D             ++  V
Sbjct: 21  GQAAEFDYS---GTQAVKALRGAGYEAILVNSNPATIMTDPDLAERTYVEPLTLEALEKV 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +A   PD     L G    +  +    + IL+   +    +   A     D+   ++ + 
Sbjct: 78  IAKEAPDALLPTLGGQTALNLSMALHEEGILKRYGVELIGANAEAIKKGEDREAFQKAMR 137

Query: 102 SCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G+ V    +V      +     +  P V++P       G  + K +  +   L +  +
Sbjct: 138 KIGLEVPRGKMVASVEEGLHFAREVGYPVVVRPSFTLGGTGGGIAKDEGELKEVLARGLA 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEI-AVPKSDFYSYELKYSSLNSTHVLPA 217
            +     L+E+ V G  E    VM D +  V  I ++   D           +S  V PA
Sbjct: 198 LSPVHTALVEESVLGWKEFELEVMRDHADTVVIITSIENVDPMGVHT----GDSITVAPA 253

Query: 218 K-IPLDIYKEVQRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
           + +    Y+ ++  A    + IG   G S   F  DP + +   +E+N 
Sbjct: 254 QTLSDVEYQRMRDAAKAVIREIGVDTGGSNIQFAVDPKTGRQVVIEMNP 302



 Score = 63.2 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 46/290 (15%), Positives = 104/290 (35%), Gaps = 38/290 (13%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVL-HGNFGEDGLV------ 68
           AL++AG++   +         D D +  L    L  +   N++ H      G++      
Sbjct: 583 ALKEAGYETIMVNSNPETVSTDYDTADRLYFEPLTLEDVLNLVEHEKPL--GVIATLGGQ 640

Query: 69  ------QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTMDS 120
                 Q  LE   +    +   A   + D+    ++    G+P     +       ++ 
Sbjct: 641 TPLKLAQG-LEEAGVKLLGTPFQAIHQAEDREAFHRLCQRLGIPQPEGRVAKSPEEALEL 699

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS-SWNHGDQLLIEQYVDGI-ELT 178
              +  P + +P        + V+K  + +   L +          +L+++Y++G  EL 
Sbjct: 700 AKEVGFPLLARPSYVLGGRAMRVLKSQEELKRYLEEVYGPLQEKPSILLDRYLEGALELD 759

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              + D    +    +   +       +S  ++T + P  +  +  ++V+        A+
Sbjct: 760 VDALSDGEEVMIAGVMEHVERAGV---HSGDSATVLPPVHLSQEALEKVRAYTRRLALAL 816

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           G RG+   +  +  L  +V+ LE N +   T     P ++   G    +L
Sbjct: 817 GVRGL--LNVQYAVLGEEVYILEANPRASRT----VPFVSKAIGVPLAKL 860


>gi|57242105|ref|ZP_00370045.1| acetyl-CoA carboxylase, biotin carboxylase [Campylobacter
           upsaliensis RM3195]
 gi|57017297|gb|EAL54078.1| acetyl-CoA carboxylase, biotin carboxylase [Campylobacter
           upsaliensis RM3195]
          Length = 481

 Score = 71.7 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 83/222 (37%), Gaps = 20/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+       E   I +            +K  ++ +++  G+PV P    
Sbjct: 78  AIHPGYGFLSENYEFAKACEEANIIFIGPKSEVIYKMGNKNIARNLMAKNGIPVVPGTEK 137

Query: 112 ---LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGD 164
              L      +    I  P ++K   GG   GI V+ +++ +         ++ ++ + D
Sbjct: 138 LNNLSLAQLKEQAERIGYPVILKASGGGGGRGIRVVHQEEELENAFESCKREALAYFNND 197

Query: 165 QLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
           ++ +E+Y+ +   +   V+GD   ++  +            K        + P   I  +
Sbjct: 198 EVFMEKYIVNPRHIEFQVLGDNYGNIIHLCERDCSIQRRHQK-----VVEIAPCPGISEN 252

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + K +   A  A +A+        +FL D      +++E+N 
Sbjct: 253 LRKTMGVTAVAAAKAVSYTNAGTIEFLLDDY-NHFYFMEMNT 293


>gi|306842689|ref|ZP_07475332.1| biotin carboxylase [Brucella sp. BO2]
 gi|306287135|gb|EFM58637.1| biotin carboxylase [Brucella sp. BO2]
          Length = 655

 Score = 71.7 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 40/225 (17%), Positives = 74/225 (32%), Gaps = 22/225 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      +E   + +      A      K  +K ++   GVPV P    
Sbjct: 77  AIHPGYGFLSENPAFVDAVEEAGLVFIGPSAKAIRAMGLKDAAKALMEKAGVPVVPGYHG 136

Query: 114 NRFT----MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
           +             I+ P +IK   GG   G+  +         L     ++ +      
Sbjct: 137 DNQDGAFLKSEADRITYPVLIKARAGGGGKGMRRVDSAADFAAALESARREAEASFGDGA 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           +L+E+Y+     +   V GD   +               L+          PA  +  ++
Sbjct: 197 VLVEKYMAKPRHIEVQVFGDNHGNAV-----HLFERDCSLQRRHQKVIEEAPAPGMTEEM 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR----KVFWLEINV 264
              +   A  A  AIG  G    +F+ D        + F++E+N 
Sbjct: 252 RAAMGEAAVKAALAIGYSGAGTVEFIADVSEGLRPDRFFFMEMNT 296


>gi|289550702|ref|YP_003471606.1| Biotin carboxylase of acetyl-CoA carboxylase [Staphylococcus
           lugdunensis HKU09-01]
 gi|289180234|gb|ADC87479.1| Biotin carboxylase of acetyl-CoA carboxylase [Staphylococcus
           lugdunensis HKU09-01]
          Length = 451

 Score = 71.7 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 38/216 (17%), Positives = 81/216 (37%), Gaps = 15/216 (6%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-SILVNRFT 117
           +G   E+G    + E  ++ +      +      K  +K  + +  VPV P S  + +  
Sbjct: 81  YGFLAENGDFAELCEACQLKFIGPSFESIQKMGIKDVAKAEMIAANVPVVPGSEGLLQSI 140

Query: 118 MDSQHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGDQLLIE 169
            D++ +   I  P +IK   GG   GI V + DQ +            +++ +G   L E
Sbjct: 141 DDAKQIANHIGYPVIIKATAGGGGKGIRVARNDQELEKGYKMTQQEAETAFGNGGLYL-E 199

Query: 170 QYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           ++++    +   ++GD    V  +            +             +     +E+ 
Sbjct: 200 KFIENFRHIEIQIIGDQFGHVVHLGERDCTI----QRRMQKLVEESPSPILTEAKREEMG 255

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             A  A QA+        +F++D    + +++E+N 
Sbjct: 256 AAAVRAAQAVNYENAGTVEFIYDLDDDQFYFMEMNT 291


>gi|190891203|ref|YP_001977745.1| carbamoyl-phosphate-synthetase [Rhizobium etli CIAT 652]
 gi|190696482|gb|ACE90567.1| putative carbamoyl-phosphate-synthetase protein [Rhizobium etli
           CIAT 652]
          Length = 397

 Score = 71.7 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 28/204 (13%), Positives = 77/204 (37%), Gaps = 14/204 (6%)

Query: 93  KMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152
           K   +       +P   S+ ++  +      +  P ++KP    S  G+  +     +  
Sbjct: 109 KQAFRNFTEQNDIPAPRSVRLHGDSPVETGALRYPLLVKPSDSFSGRGVTKVFDRTELAD 168

Query: 153 DLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
            +  +   +   +++IE++++G +      + +  +          D Y     Y   +S
Sbjct: 169 AIADARRNSRAAEIVIEEFIEGSLHSHSAFIKNQEIVFDVFV----DEYCTVYPYQVDSS 224

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLE-INVQPGMT 269
            H  P+++   +  + + +     + +G + G+  + FL       V+ +E +   PG  
Sbjct: 225 NH--PSRLSETVRSKTRTIMARVIKLLGLQDGLIHTQFL--SNDDDVWIVECMRRCPGDL 280

Query: 270 PVSIFPEMAAYAGYSFRELLLWMV 293
             S+        G  + +L++ ++
Sbjct: 281 YGSLVDLSL---GIDYADLVITLL 301


>gi|163815179|ref|ZP_02206560.1| hypothetical protein COPEUT_01337 [Coprococcus eutactus ATCC 27759]
 gi|158449588|gb|EDP26583.1| hypothetical protein COPEUT_01337 [Coprococcus eutactus ATCC 27759]
          Length = 1075

 Score = 71.7 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 54/312 (17%), Positives = 116/312 (37%), Gaps = 37/312 (11%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL+  G+++  +              DV        + +  ++A  +PD    
Sbjct: 29  SGTQACKALKKLGYEIVLVNSNPATIMTDPETADVTYIEPLNVKRLEQIIAKERPDALLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G  G +   +     IL+   +      + A     D++  K+ +++ G+ +  S +
Sbjct: 89  NLGGQSGLNLCAELAKEGILDKYNVKVIGVQVDAIERGEDRIEFKKSMNAIGIEMARSEV 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     +  P V++P       G  ++   + +     +    +   Q+L+E+
Sbjct: 149 AYSVDEALAIADQLGYPVVLRPAYTMGGAGGGLVYNKEELKTVCARGLQASLVGQVLVEE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQ 228
            + G  EL   V+ D   ++  +   ++      L   + +S    P   I  D+ K +Q
Sbjct: 209 SILGWEELELEVVRDCEGNMITVCFIEN---IDPLGVHTGDSFCSAPMLTISEDVQKRLQ 265

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
             A+    ++   G +   F  DP+S ++  +EIN +   T  S     +   G+    L
Sbjct: 266 EQAYKIVDSVEVIGGTNVQFAHDPVSDRIIVIEINPR---TSRSS-ALASKATGFPIA-L 320

Query: 289 LLWMVEDASCLR 300
           +  M+     L+
Sbjct: 321 VSAMLATGLTLK 332



 Score = 57.4 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/196 (13%), Positives = 72/196 (36%), Gaps = 8/196 (4%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           LE   +    +      L+ D+   ++++    +P+  S +       ++  H I  P +
Sbjct: 647 LEKNGVKILGTSPAVIDLAEDRDLFREMMDKLEIPMPESGMATTVDEALEIAHKIGYPVM 706

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLD 188
           ++P       G+ V+  D+S+   +  +        +LI+++++  +E     + D +  
Sbjct: 707 VRPSYVLGGRGMEVVYDDESLDGYMRAAVGVTPDRPILIDRFLNHALECEADAISDGTHA 766

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                +   +       +S  ++  +    I  +    ++       + +   G+   + 
Sbjct: 767 FVPAVMEHIELAGV---HSGDSACIIPSVHITAENVATIKEYTKKIAEEMHVVGL--MNM 821

Query: 249 LFDPLSRKVFWLEINV 264
            +     KV+ LE N 
Sbjct: 822 QYAIEKGKVYVLEANP 837


>gi|148269613|ref|YP_001244073.1| phosphoribosylaminoimidazole carboxylase ATPase subunit [Thermotoga
           petrophila RKU-1]
 gi|147735157|gb|ABQ46497.1| phosphoribosylaminoimidazole carboxylase [Thermotoga petrophila
           RKU-1]
          Length = 380

 Score = 71.7 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 40/202 (19%), Positives = 77/202 (38%), Gaps = 17/202 (8%)

Query: 68  VQAILELLEIPY-THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP 126
           VQ + +L +  Y  H       +  DK   K+ +   G+PV     V     D +     
Sbjct: 75  VQTLKKLYDEGYRIHPSPYTLEIIQDKFIQKEFLKKNGIPVPRYKPVKDLESDVRE-FGF 133

Query: 127 PYVIKPLKGG-SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGD 184
           P V K  KGG    G+ +IK ++ +   +          +  +E++V+   EL   V  +
Sbjct: 134 PVVQKARKGGYDGRGVFIIKNEKDLENAI--------KGETYLEEFVEIEKELAVMVARN 185

Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244
              +     V +  ++  +    ++  T + PA+I     K  + +A    +A+   GI 
Sbjct: 186 EKGETACYPVVEM-YFDEDA---NICDTVIAPARIEEKHSKIAREIATSVVEALEGVGIF 241

Query: 245 RSDFLFDPLSRKVFWLEINVQP 266
             +        ++   EI  +P
Sbjct: 242 GIEMFLTKQ-GEILVNEIAPRP 262


>gi|229544083|ref|ZP_04433142.1| carbamoyl-phosphate synthase, large subunit [Bacillus coagulans
           36D1]
 gi|229325222|gb|EEN90898.1| carbamoyl-phosphate synthase, large subunit [Bacillus coagulans
           36D1]
          Length = 1067

 Score = 71.7 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 50/268 (18%), Positives = 100/268 (37%), Gaps = 30/268 (11%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL++ G +V  ++ +                      S+  +L   +PD     L G  G
Sbjct: 36  ALKEEGIEVVLVNSNPATIMTDEEMADRIYFDPLTVESIEQILQKERPDGIIGTLGGQTG 95

Query: 64  EDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT-- 117
            +  VQ     IL+   +    + + +     D+ + +Q++   G P+ PS +V      
Sbjct: 96  LNLTVQLYEAGILDKYGVQLLGTPVDSIQKGEDREKFRQLMLDIGEPIPPSKIVENMEDG 155

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IE 176
           +     I  P +I+P       G      D+ +   L +    +   Q+L+E+ + G  E
Sbjct: 156 LAFAKKIGYPVIIRPAYTLGGSGGGFAANDEELREVLQRGLDLSPIHQVLLEKSIKGWKE 215

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +   V+ DA+   T I V   +       ++  +        +    Y+ ++  +    +
Sbjct: 216 IEYEVVRDAND--TCIIVCNMENIDPVGVHTGDSIVVAPSQTLSDVQYQLLRDASLKVIR 273

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINV 264
           A+G  G     F  DP S +   +E+N 
Sbjct: 274 ALGVIGGCNIQFALDPHSDQYNIIEVNP 301



 Score = 70.5 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 47/297 (15%), Positives = 98/297 (32%), Gaps = 40/297 (13%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           S  A   AL+  G++   ++ +                       +  ++   +    F 
Sbjct: 577 SVHAVM-ALKQLGYETIVVNNNPETVSTDFSMADKLYFDPLRPEDLLHIIEKEQVAGVFT 635

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116
              G    +  V + LE   +    + +       D+    +++   G+P          
Sbjct: 636 QFGGQTAIN--VASSLEAEGVKLFGTNVEQIDQLEDRNLFYKLLDELGIPHIKGHTAYDA 693

Query: 117 TMDS--QHLISPPYVIKPLK--GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                    +S P +++P    GG S+ I    +D+          +      L+I+QY+
Sbjct: 694 EELKRGAKDLSFPVLVRPSYVIGGQSMFIF-YHEDELNAYADALKYASEKSWPLMIDQYL 752

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLA 231
            G E     + D      ++ +P    +  +    S +S  V P + +   + + + R A
Sbjct: 753 PGTECELDCICDGE----KVLIPGIFEHIEKAGVHSGDSMAVYPPQHLSPSVQETLIRYA 808

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
                    +GI+   FL       V+ LE+N +   T     P ++   G    +L
Sbjct: 809 EKICLKGKIKGIANIQFLI--YEGTVYVLEVNPRASRT----VPILSKVTGIPMIDL 859


>gi|16800462|ref|NP_470730.1| acetyl-CoA carboxylase biotin carboxylase subunit [Listeria innocua
           Clip11262]
 gi|16413867|emb|CAC96625.1| acetyl-CoA carboxylase subunit (biotin carboxylase subunit)
           [Listeria innocua Clip11262]
 gi|313619075|gb|EFR90881.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Listeria
           innocua FSL S4-378]
 gi|313623881|gb|EFR93996.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Listeria
           innocua FSL J1-023]
          Length = 454

 Score = 71.7 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 81/220 (36%), Gaps = 16/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     + E   I +      A +    K  +++ +   GVP+ P    
Sbjct: 77  AIHPGYGFLAENADFAELCEDCNITFIGPSASAISQMGTKDVARETMRKAGVPIVPGSQG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
            +            I  P +IK   GG   GI V + ++ +   +     ++ +      
Sbjct: 137 IVADVEDGKKIAKKIGYPVIIKATAGGGGKGIRVAENEEKLISGIQTTQQEAEAAFGDPG 196

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+Y+     +   V+ D   +V  +            K    + +   PA I     
Sbjct: 197 VYLEKYIQDFRHVEIQVLADNHGNVIHLGERDCSIQRRLQKLIEESPS---PA-IDEKTR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +++ + A  A +A+   G    +F+FD      +++E+N 
Sbjct: 253 QKMGKAAVKAAKAVNYSGAGTIEFIFDHHENNFYFMEMNT 292


>gi|212703300|ref|ZP_03311428.1| hypothetical protein DESPIG_01343 [Desulfovibrio piger ATCC 29098]
 gi|212673260|gb|EEB33743.1| hypothetical protein DESPIG_01343 [Desulfovibrio piger ATCC 29098]
          Length = 1233

 Score = 71.7 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 41/244 (16%), Positives = 92/244 (37%), Gaps = 25/244 (10%)

Query: 35  QIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSM 91
            +D+DR   ++    +  +    +H  +G   ED       +   I +  +   A  L  
Sbjct: 72  YLDIDR---IIDKARQRGVV--GIHPGWGFASEDTRFPQRCKEAGITFIGATAEAMNLLG 126

Query: 92  DKMRSKQVVSSCGVPVCP---SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQ 148
           +K++++ V    G+PV P     +           I  P ++K   GG   GI  I  + 
Sbjct: 127 NKVQARAVARKLGIPVVPGSDGAVDIATARQLISEIGLPIMLKAEGGGGGRGIFAIHNEA 186

Query: 149 SIPLDLLQSSSWNH----GDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYE 203
            +     ++S+         +L +E+++ D   +   V+ D   +V        D     
Sbjct: 187 ELEDAFFKASTMAQASFGNPRLFVEKFLADVRHIEIQVIADMYGNVFAF-----DERDCT 241

Query: 204 LKYSSLNSTHVLP---AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260
           ++ +      + P     +   + ++++  A    +A+G   ++  +FL  P     + +
Sbjct: 242 VQRNHQKLVEITPSPWPGMTRQLREQLKDYARRLVRAVGYHSLATVEFLVTP-DGTPYMI 300

Query: 261 EINV 264
           E+N 
Sbjct: 301 EVNT 304


>gi|156938186|ref|YP_001435982.1| carbamoyl phosphate synthase large subunit [Ignicoccus hospitalis
           KIN4/I]
 gi|156567170|gb|ABU82575.1| carbamoyl-phosphate synthase large subunit [Ignicoccus hospitalis
           KIN4/I]
          Length = 1047

 Score = 71.7 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 24/194 (12%), Positives = 74/194 (38%), Gaps = 10/194 (5%)

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ--HLISPPYVI 130
           E L +P   +   +   + D+ +   ++    +     +  +      +    +  P ++
Sbjct: 633 EALGVPLLGTPGRSVDTAEDRKKFSDLLDKLNIKQPRWVSASSMEELKKFVDEVGFPVIV 692

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDV 189
           +P    S   + V+   + +   + ++S  +    +++ ++  G  E     + D++  V
Sbjct: 693 RPSYVLSGSAMKVVWSWEELVEFVRKASEVSREHPVVVSEFFVGAREAEVDAVSDSA-SV 751

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
             + +   +           +ST V PA++  ++  ++  ++    + +  RG     FL
Sbjct: 752 VAVPLSHVEPAGVHS----GDSTMVTPARLEDEVVNKMLDISLTLARELEIRGPFNIQFL 807

Query: 250 FDPLSRKVFWLEIN 263
               +   + +E+N
Sbjct: 808 V--KNNDPYVIELN 819



 Score = 64.0 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 45/314 (14%), Positives = 106/314 (33%), Gaps = 49/314 (15%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQIDVD---------------------RSVGLV 45
           G ++E + S S       AL + G +   ++ +                       +  +
Sbjct: 18  GEAAEFDYSTSQA---LKALREEGIETILVNPNVATVQTTKEMSDKLYFVPLRRDILEKI 74

Query: 46  LAHLKPDLAFNVLHGNFG--------EDGLVQAILELLEIPYTHSGILASALSMDKMRSK 97
           +   +PD       G           E G++Q       +    + I     + DK    
Sbjct: 75  IEAERPDGILIGFGGQTALTLGVELWESGVLQKY----GVKVIGTPIEGIKKATDKTLFA 130

Query: 98  QVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
           + +   G+P+ PS   +     ++    +  P +++        G  +    + +   ++
Sbjct: 131 KTMKENGIPMPPSEAASNVDEALEIAERLGYPVIVRIAFTLGGKGSFIAWNRRELEKWVV 190

Query: 156 QSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKS-DFYSYELKYSSLNSTH 213
           ++ + +   ++L+E+Y+    E+   V+ DA  +   +A  ++ D           +S  
Sbjct: 191 RAFAQSAVGRVLVEKYLHHWKEIEFEVVRDAYNNSVAVACLENLDPMGVHT----GDSVV 246

Query: 214 VLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
           + P + +    Y+ ++  +    + IG  G        DP     + +E    P M+  S
Sbjct: 247 IAPCQTLTNREYQILRDASIRVAEVIGLVGEGNVQLALDPRGETYYVIE--TNPRMSRSS 304

Query: 273 IFPEMAAYAGYSFR 286
                +   GY   
Sbjct: 305 --ALASKATGYPLA 316


>gi|27262158|gb|AAN87360.1| Carbamoyl-phosphate synthase large chain [Heliobacillus mobilis]
          Length = 1083

 Score = 71.7 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 48/295 (16%), Positives = 102/295 (34%), Gaps = 36/295 (12%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ------ 69
           AL D G +   I         D D +  L    L  +   N++     E  +VQ      
Sbjct: 580 ALRDCGVESIIINNNPETVSTDFDTADKLFFEPLALEDVLNIVEKEKPEGVVVQFGGQTA 639

Query: 70  ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL-- 123
               A L    +    + +     + D+ + + ++ S G+P                   
Sbjct: 640 INLAAGLSEHGVKILGTSLEGIDAAEDRKKFEALLKSLGIPQSEGKTATSAAEAKAIAEE 699

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           +  P +++P        + V++  + +   +  +   +    +L+++Y+ G E+    + 
Sbjct: 700 LGFPVLVRPSYIIGGRAMEVVENVKDLESYMETAVRISPKHPILVDKYIRGKEVEVDAIS 759

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRG 242
           D     T+  +P    +       S +S  V P + +     + +        +A+   G
Sbjct: 760 DG----TDTLIPGIFEHIERAGVHSGDSMAVYPPQTLTTAERETIVDYTLRIAKALQVVG 815

Query: 243 ISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEMAAYA----GYSFREL 288
           +    ++ D    KV+ LE+N       P ++ V+  P +        G S  EL
Sbjct: 816 LLNIQYVVDNQ-GKVYVLEVNPRASRTVPILSKVTGVPMIKVAVQIMLGKSLAEL 869



 Score = 59.4 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 51/287 (17%), Positives = 103/287 (35%), Gaps = 35/287 (12%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI---------DVD------------RSVGLV 45
           G ++E + +   G     AL++ G +V  +         D +             S+  +
Sbjct: 21  GQAAEFDYA---GTQACKALKEEGLEVVLVNSNPATIMTDANIADHVYIEPLNVPSLTRI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   +PD     L G  G +  V      +LE  ++    + I A   + D+   KQ + 
Sbjct: 78  IDQERPDGLLPTLGGQTGLNLAVALSQAGVLEKYQVRLLGTSIEAIKKAEDRELFKQTMQ 137

Query: 102 SCGVPVCPSILVNRFTMD--SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
               P+  S +V+         +    P +I+P       G  +   +  +         
Sbjct: 138 DLNEPIPLSDIVSSLDQAVAFANKTGYPLIIRPAYTLGGTGGGIAHNETELLTICDMGLK 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   Q+L+EQ V G  E+   VM DA+ +   I     + +   +   + +S  V P++
Sbjct: 198 KSMIGQVLLEQSVAGWKEIEYEVMRDANNNCITIC--NMENFD-PVGIHTGDSIVVAPSQ 254

Query: 219 -IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +    Y+ ++  A    + +   G     F   P   +   +E+N 
Sbjct: 255 TLTDKEYQMLRTAALKIIRELKVEGGCNVQFALHPFKCEYIVIEVNP 301


>gi|322435919|ref|YP_004218131.1| urea carboxylase [Acidobacterium sp. MP5ACTX9]
 gi|321163646|gb|ADW69351.1| urea carboxylase [Acidobacterium sp. MP5ACTX9]
          Length = 1227

 Score = 71.7 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 43/256 (16%), Positives = 85/256 (33%), Gaps = 32/256 (12%)

Query: 58  LHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
           +H  +G   E+           + +             K  ++     CGVP+ P   + 
Sbjct: 78  IHPGYGFLSENIAFARECTARGLVFIGPTPANIDAFALKHTARATAKQCGVPLLPGTGLL 137

Query: 115 RFTMDS---QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD----LLQSSSWNHGDQLL 167
               D+      +  P ++K   GG  +G+ V      +       L  S +      + 
Sbjct: 138 ADKQDALTQAETLRYPVMLKSSGGGGGIGMKVCHSAPELEEAYDSVLRLSKANFGDSGVY 197

Query: 168 IEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYK 225
           +E+YV     +   + GD   +V  +            +          PA  +     K
Sbjct: 198 LEKYVARARHIEVQIFGDGQGNVIALGE-----RDCSAQRRHQKVLEETPAPGLSAATRK 252

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYA 281
            +   A L  +A+        +F++D  +   ++LE+N +     G+T            
Sbjct: 253 HLYDSAVLLGKAVDYANAGTVEFIYDEDTTDFYFLEVNTRLQVEHGVTE--------QVT 304

Query: 282 GYSFRELLLWMVEDAS 297
           G    +L+ WMV+ A+
Sbjct: 305 GI---DLVEWMVQQAA 317


>gi|256379967|ref|YP_003103627.1| pyruvate carboxylase [Actinosynnema mirum DSM 43827]
 gi|255924270|gb|ACU39781.1| pyruvate carboxylase [Actinosynnema mirum DSM 43827]
          Length = 1125

 Score = 71.7 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 42/247 (17%), Positives = 80/247 (32%), Gaps = 18/247 (7%)

Query: 28  DAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87
           + G  V        V         D  +   +G   E+  +        I +        
Sbjct: 53  EPGHPVRAYLSVDEVIKAARKAGADAVYPG-YGFLSENPGLAKACADAGITFVGPPTEVL 111

Query: 88  ALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSLGIIV 143
            L+ +K  +     + G+PV  S       +D+       I  P  +K + GG   G+  
Sbjct: 112 ELTGNKASAIAAARAAGLPVLKS-SDPSSDVDALLAAADDIGFPVFVKAVAGGGGRGMRR 170

Query: 144 IKK----DQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSD 198
           ++      +SI     ++ S      + +EQ  V+   +   ++ D    V         
Sbjct: 171 VEDPAALRESIEAASREAESAFGDPTVFLEQAVVEPRHIEVQILADGQGGVI-----HLF 225

Query: 199 FYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
                ++        + PA  +  ++ + +   A    + IG R     +FL DP    V
Sbjct: 226 ERDCSVQRRHQKVIEIAPAPNLSPELRERICGDAVRFAEHIGYRNAGTVEFLLDPRGNYV 285

Query: 258 FWLEINV 264
           F  E+N 
Sbjct: 286 FI-EMNP 291


>gi|220934153|ref|YP_002513052.1| carbamoyl-phosphate synthase, large subunit [Thioalkalivibrio sp.
           HL-EbGR7]
 gi|219995463|gb|ACL72065.1| carbamoyl-phosphate synthase, large subunit [Thioalkalivibrio sp.
           HL-EbGR7]
          Length = 1072

 Score = 71.7 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 46/278 (16%), Positives = 102/278 (36%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D +            ++V  ++   KPD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADAVYIEPVEWKTVARIIEREKPDAILP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      +L+   +    +   A  ++ D+ R +  ++  G+    + +
Sbjct: 89  TMGGQTALNCALDLAKHGVLKKHNVELIGASEDAIDMAEDRERFRDAMTEIGLESPMAFV 148

Query: 113 VNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           VN +    + Q  I  P +I+P       G  +          + +    +  +++ +E+
Sbjct: 149 VNTWDEAQEVQPKIGFPVIIRPSFTMGGSGGGIAYNRDEYEEIVKRGLDLSPTNEVQVEE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            V G  E    V+ D + +   I   ++ D           +S  V PA+ +    Y+ +
Sbjct: 209 SVLGWKEYEMEVVRDKADNCIIICSIENLDPMGIHT----GDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P   ++  +E+N 
Sbjct: 265 RNASIAVLRKIGVDTGGSNVQFAVNPDDGRLVIIEMNP 302



 Score = 60.5 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 28/196 (14%), Positives = 75/196 (38%), Gaps = 8/196 (4%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           LE   +P   +   +  L+ D+ R +Q++    +   P+         +     I  P V
Sbjct: 653 LEAAGVPIIGTTPDSIDLAEDRERFQQLIDRLELVQPPNRTARSVEDAISKAEEIGYPVV 712

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  ++ +   +  +   ++   +L+++++ D +E+    + D    
Sbjct: 713 VRPSYVLGGRAMEIVYNEEDLRRYMRSAVQVSNDAPVLLDRFLDDAVEVDVDAICDGEEV 772

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           +    +   +       +S  ++  + P  +   I  E++        A G + +   + 
Sbjct: 773 LIGGVMQHIEQAGV---HSGDSACSLPPYSLDKKIQDELREQVRKM--AFGLKVVGLMNT 827

Query: 249 LFDPLSRKVFWLEINV 264
            F     KV+ LE+N 
Sbjct: 828 QFAVQGDKVYVLEVNP 843


>gi|19921944|ref|NP_610527.1| CG1516, isoform E [Drosophila melanogaster]
 gi|24652210|ref|NP_724837.1| CG1516, isoform A [Drosophila melanogaster]
 gi|24652212|ref|NP_724838.1| CG1516, isoform B [Drosophila melanogaster]
 gi|24652214|ref|NP_724839.1| CG1516, isoform D [Drosophila melanogaster]
 gi|24652216|ref|NP_724840.1| CG1516, isoform G [Drosophila melanogaster]
 gi|320543723|ref|NP_001188898.1| CG1516, isoform P [Drosophila melanogaster]
 gi|4972690|gb|AAD34740.1| unknown [Drosophila melanogaster]
 gi|7303838|gb|AAF58885.1| CG1516, isoform A [Drosophila melanogaster]
 gi|7303839|gb|AAF58886.1| CG1516, isoform D [Drosophila melanogaster]
 gi|7303840|gb|AAF58887.1| CG1516, isoform B [Drosophila melanogaster]
 gi|21645484|gb|AAM71030.1| CG1516, isoform E [Drosophila melanogaster]
 gi|21645485|gb|AAM71031.1| CG1516, isoform G [Drosophila melanogaster]
 gi|318068558|gb|ADV37146.1| CG1516, isoform P [Drosophila melanogaster]
          Length = 1181

 Score = 71.7 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 32/205 (15%), Positives = 80/205 (39%), Gaps = 17/205 (8%)

Query: 69  QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLI 124
           QA+++   + +            DK+ ++      GVP+ P     +      ++     
Sbjct: 131 QAVID-AGLRFIGPSPEVVQKMGDKVAARVAAIEAGVPIVPGTDGPVTTKEEALEFCKKH 189

Query: 125 SPPYVIKPLKGGSSLGIIVIKK----DQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTC 179
             P + K   GG   G+ V++K    ++S      ++ +      + IE++++    +  
Sbjct: 190 GLPVIFKAAYGGGGRGMRVVRKMEDVEESFQRASSEAKAAFGNGAMFIEKFIERPRHIEV 249

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAI 238
            ++GD + +V  +           ++        + PA ++P++I  ++   A    + +
Sbjct: 250 QLLGDKAGNVVHLYE-----RDCSVQRRHQKVVEIAPAPRLPIEIRDKMTEAAVRLARHV 304

Query: 239 GCRGISRSDFLFDPLSRKVFWLEIN 263
           G       +FL D      +++E+N
Sbjct: 305 GYENAGTVEFLCDESGN-FYFIEVN 328


>gi|327313557|ref|YP_004328994.1| phosphoribosylglycinamide formyltransferase 2 [Prevotella denticola
           F0289]
 gi|326944331|gb|AEA20216.1| phosphoribosylglycinamide formyltransferase 2 [Prevotella denticola
           F0289]
          Length = 393

 Score = 71.7 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 52/282 (18%), Positives = 93/282 (32%), Gaps = 46/282 (16%)

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD-----KMR 95
           ++  V+   +PDL    +     E         L++       I  SA +++     +  
Sbjct: 55  ALDAVVGFHEPDLIIPEIEAIRTE--------RLVDYERQGIQIAPSARAVNFTMNRRAI 106

Query: 96  SKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153
                S  G+          +    ++   I  P V+KPL   S  G   +  D  +   
Sbjct: 107 RDLAASELGLRTAKYFYAKTYEEFKEAADEIGFPCVVKPLMSSSGHGQSYVHNDDELQEA 166

Query: 154 LLQSSSWNHGD--QLLIEQYVDGIE----LTCGVMGDASLDVTEIA-VPKSDFYSYELKY 206
              +     GD  +++IE+++D       LT       +L    I  V K   Y      
Sbjct: 167 FKNAMEGARGDVKEVIIEEFIDFDSEFTLLTVTQKNGPTLFCPPIGHVQKGGDY------ 220

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
                    P  I  +  ++ + +A    +A+   GI   +F     S +V + E++ +P
Sbjct: 221 ----RESWQPYTISDEALQQAEHMADEVTRALTGYGIWGVEFFLT-RSGEVIFSELSPRP 275

Query: 267 ---GM------TPVSIFPEMAAY-AGYSFRELLLWMVEDASC 298
              GM      T  S F        G     +    +E A C
Sbjct: 276 HDTGMVTLAHTTNFSEFELHFRAVMGLPIPAI---HLEHAGC 314


>gi|317057027|ref|YP_004105494.1| carbamoyl-phosphate synthase large subunit [Ruminococcus albus 7]
 gi|315449296|gb|ADU22860.1| carbamoyl-phosphate synthase, large subunit [Ruminococcus albus 7]
          Length = 1351

 Score = 71.7 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 49/288 (17%), Positives = 100/288 (34%), Gaps = 35/288 (12%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQIDVD---------------------RSVGLV 45
           G ++E + +   G     AL+  G +V  I+ +                      +V  V
Sbjct: 21  GQAAEFDYA---GTQACRALKQQGLEVILINSNPATIMTDNAMADKIYIEPLTLETVKRV 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   +PD   + L G  G    +Q      L+   +    +       + D+   K  + 
Sbjct: 78  IIKERPDSLLSTLGGQTGLTLSMQLAKEGFLDEYNVKLLGANPETIDKAEDRQLFKDTME 137

Query: 102 SCGVPVCPSILVNRFT----MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
           S G P  PS +VN          +  I  P +I+P       G  ++  ++ +       
Sbjct: 138 SIGQPCIPSKVVNTVEDAVAFSKEEGIGFPLIIRPAFTLGGTGGGIVNNEEELIEITRNG 197

Query: 158 SSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216
              +   Q+L+E+ + G  E+   VM D+  +V  I V   + +     ++  +      
Sbjct: 198 LYLSPITQVLVEKCIAGWKEIEFEVMRDSKGNV--ITVCSMENFDPVGVHTGDSIVIAPA 255

Query: 217 AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +    Y+ ++  A      +   G     F  +P + +   +E+N 
Sbjct: 256 VTLADKEYQMLRSAALKIIDTLKVEGGCNCQFALNPETFEYAVIEVNP 303



 Score = 65.9 bits (160), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 45/286 (15%), Positives = 99/286 (34%), Gaps = 32/286 (11%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH---------GNFGEDG 66
           AL++ G+ V  +         D D +  L    L  +   N++             G+  
Sbjct: 580 ALKEHGYDVVIVNNNPETVSTDFDTADRLYFEPLTNEDVMNIIRVEKPVGVVVAFGGQTA 639

Query: 67  -LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHL 123
             +   L    +    +   +   + D+ R  +++    +       V      +D    
Sbjct: 640 IKLTKYLSENGVKILGTPPDSIDAAEDRERFDELLEDLHIKRPEGFTVMTCEEALDVADK 699

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        +I+   +  I   +         + +LI++Y+ GIEL    + 
Sbjct: 700 IGYPVLMRPSYVLGGQNMIIAFNEADIKEYMAIILDQGIENPVLIDKYLMGIELEIDAIC 759

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRG 242
           D      EI +P    +       S +S  V PA  +   +  +V   +     ++  +G
Sbjct: 760 DGE----EILIPGIMEHIERTGIHSGDSIAVYPAWNVSDRLIDKVVDCSKRLALSLKTKG 815

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           +    +L      +++ +E+N +   T     P ++   G    +L
Sbjct: 816 LVNIQYLI--YDDELYVIEVNPRSSRT----IPYISKVTGVPMVDL 855


>gi|296314312|ref|ZP_06864253.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Neisseria
           polysaccharea ATCC 43768]
 gi|296838973|gb|EFH22911.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Neisseria
           polysaccharea ATCC 43768]
          Length = 453

 Score = 71.7 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 39/222 (17%), Positives = 79/222 (35%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         L  DK+ +K  + + GVP  P    
Sbjct: 77  AIHPGYGFLAENANFAEQVEQSGFIFIGPKADTIRLMGDKVSAKHAMIAAGVPCVPGSDG 136

Query: 112 LVNRFTMD---SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
            +     +       +  P +IK   GG   G+ V++K + +   +     ++ +     
Sbjct: 137 ALPDDDAEILKIADKVGYPVIIKASGGGGGRGMRVVEKKEDLLQSVEMTKAEAGAAFGNP 196

Query: 165 QLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+Y+     +   V+ D   +   +A           K          PA  I   
Sbjct: 197 MVYMERYLQRPRHVEIQVIADEHGNAIYLAERDCSMQRRHQK-----VIEEAPAPFITEK 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              ++ +    A + IG RG    +FL+     + F++E+N 
Sbjct: 252 ERAKIGKACADACKRIGYRGAGTFEFLY--EDGEFFFIEMNT 291


>gi|194222019|ref|XP_001493941.2| PREDICTED: similar to propionyl-Coenzyme A carboxylase, alpha
           polypeptide [Equus caballus]
          Length = 747

 Score = 71.7 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 74/221 (33%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      L   ++ +      A     DK+ SK +     V   P    
Sbjct: 155 AVHPGYGFLSENREFAKCLAEEDVIFIGPDTHAIQAMGDKIESKLLAKKAKVNTIPGFDG 214

Query: 112 LVNRFTMDS--QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGD 164
           +V            I  P +IK   GG   G+ +   D+             +SS+   D
Sbjct: 215 VVKDADEAVRIAREIGYPVMIKASAGGGGKGMRIAWDDEETRDGFRFSSQEAASSFG-DD 273

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           +LLIE+++D    +   V+GD   +   +   +        K             +  + 
Sbjct: 274 RLLIEKFIDNPRHIEIQVLGDKHGNALWLNERECSIQRRNQK----VVEEAPSIFLDSET 329

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +   A    +A+        +FL D      ++LE+N 
Sbjct: 330 RRAMGEQAVALAKAVKYSSAGTVEFLVDSKKN-FYFLEMNT 369


>gi|332534291|ref|ZP_08410135.1| ribosomal protein S6 glutaminyl transferase like protein
           [Pseudoalteromonas haloplanktis ANT/505]
 gi|332036287|gb|EGI72759.1| ribosomal protein S6 glutaminyl transferase like protein
           [Pseudoalteromonas haloplanktis ANT/505]
          Length = 464

 Score = 71.7 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 32/185 (17%), Positives = 71/185 (38%), Gaps = 15/185 (8%)

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSLGIIVI 144
              +K+      +   VP   +++V     ++    +   + P V+K  +G  S G+  +
Sbjct: 255 RCCNKVYLHDAFNYQKVPSLKTLVVADQANETLEQLEEAFTYPLVLKMPEGSFSKGVFKV 314

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKS--DFYS 201
                +   L  +  + +   +L ++Y+    +   GV+   ++      + ++    Y+
Sbjct: 315 SNRDELVAKL--TELFEYSALVLAQEYMYTEYDWRVGVLNGRAIYACRYLMARNHWQIYN 372

Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
           ++ K         LP     ++ K V   A  A + +G RG+   D        K + LE
Sbjct: 373 HDAKRFFSGGFETLP---TFELPKAVLDAALKACKTVG-RGLYGVD--VKEHQGKAYVLE 426

Query: 262 INVQP 266
           +N  P
Sbjct: 427 VNDNP 431


>gi|313889246|ref|ZP_07822900.1| carbamoyl-phosphate synthase, large subunit [Peptoniphilus harei
           ACS-146-V-Sch2b]
 gi|312844800|gb|EFR32207.1| carbamoyl-phosphate synthase, large subunit [Peptoniphilus harei
           ACS-146-V-Sch2b]
          Length = 1067

 Score = 71.7 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 27/225 (12%), Positives = 82/225 (36%), Gaps = 13/225 (5%)

Query: 67  LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTMDSQHLI 124
            +   L   ++    +       + D+ +  +++    +       +   +  +++   +
Sbjct: 642 KLAKYLHEQKVNIFGTDFEDIDRAEDREKFDEMLEELKINRPKGHGVFTIKEGLETAKEL 701

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
           S P +++P       G+ +   + S+   L  +   +  + +LI++Y+ G E+    + D
Sbjct: 702 SYPLLVRPSYVLGGQGMQITYDENSLMTYLKSAFERDAINPVLIDKYLVGREIEVDAISD 761

Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGI 243
               +    +   +           +S  + P   I  +I  ++        +A+  +G+
Sbjct: 762 GEDVLIPGIMEHLERAGVHS----GDSITIYPSINISSEIKDKILDYTKKIAKALHVKGM 817

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
               F+       ++ +E+N +   T     P ++  +G    +L
Sbjct: 818 INIQFI--EYKNDLYIIEVNPRASRT----VPYISKVSGVPIVDL 856



 Score = 56.3 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 46/288 (15%), Positives = 103/288 (35%), Gaps = 37/288 (12%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQID-------VDRSVGLVLAHLKPDLAFN--- 56
           G ++E + S   G      L++ G +   ++        D+ V   +      ++F    
Sbjct: 21  GQAAEFDYS---GTQACETLKNNGVETVLVNSNPATIMTDKGVADKIYIEPITISFIEKI 77

Query: 57  --------VLHGNFGEDGL-------VQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
                   ++ G  G+ GL        + IL+   I    + I A     D+   ++ + 
Sbjct: 78  IEKERPDSLIAGMGGQTGLNMTLELDKRGILDKYGIKVIGTDIDAIKKGEDRDIFRKTMQ 137

Query: 102 SCGVPVCPSILVNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G P+  S +        +    I  P V++P       G      ++ +   L    S
Sbjct: 138 EIGEPIIESEIATSLEEGKELAKKIGYPLVVRPAYTLGGTGGGFAYDEEELVEVLSHGLS 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
            +  ++ L+E+ + G +E+   V+ D++ + +    +   D           +S  V P 
Sbjct: 198 LSPVNECLLEKSIRGWMEIEFEVIRDSAGEKIIVCDMENVDPVGVHT----GDSIVVAPC 253

Query: 218 K-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +  D+ ++++  A    + +   G        +P +     +EIN 
Sbjct: 254 QSLDKDVLQKLKNSALNIVENVNVVGACNVQLALNPETLDYAVIEINP 301


>gi|294500996|ref|YP_003564696.1| carbamoyl-phosphate synthase, large subunit [Bacillus megaterium QM
           B1551]
 gi|294350933|gb|ADE71262.1| carbamoyl-phosphate synthase, large subunit [Bacillus megaterium QM
           B1551]
          Length = 1070

 Score = 71.7 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 35/229 (15%), Positives = 81/229 (35%), Gaps = 18/229 (7%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           LE   +    + + +   + D+ + +  ++   VP      V      +     I  P +
Sbjct: 646 LEARGVKILGTSLESLDAAEDRKKFEATLARLEVPQPLGKTVTSVEEAVIVAKEIGYPVL 705

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           ++P        + ++ K++ +   +  +   +    +LI++Y+ G E+    + D    V
Sbjct: 706 VRPSYVLGGRAMEIVYKEEELLHYMKHAVKVHADHPVLIDRYLTGKEIEVDAISDGETVV 765

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               +   +           +S  V P + +  D+   +        + +   G+    F
Sbjct: 766 IPGIMEHVERAGVHS----GDSIAVYPPQTLSQDVKDTIIDYTTRIAKGLNIIGLLNIQF 821

Query: 249 LFDPLSRKVFWLEIN-----VQPGMTPVSIFPEMAAYA----GYSFREL 288
           +      +VF LE+N       P ++ ++  P          G S REL
Sbjct: 822 VLSK--GEVFVLEVNPRSSRTVPFLSKITRIPMANVATKVILGTSLREL 868



 Score = 64.8 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 53/303 (17%), Positives = 117/303 (38%), Gaps = 37/303 (12%)

Query: 19  GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57
            +AC  AL++ G+KV  ++ +                       V  ++   +PD     
Sbjct: 31  AQACI-ALKEEGYKVILVNSNPATIMTDSEMADKVYIEPLTVEFVSSIIRKERPDALLPT 89

Query: 58  LHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
           L G  G +  V+     ILE   +    + + A   + D+ + + +++    PV  S ++
Sbjct: 90  LGGQTGLNLAVELHETGILEEFNVEILGTKLSAIEQAEDREQFRSLMNELNQPVPASEII 149

Query: 114 NRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
           +           ++ P +++P       G  +   +Q +   +      +   Q L+E+ 
Sbjct: 150 HSLDEAYAFVEQVNYPVIVRPAYTLGGTGGGICNNEQELIEIVTSGLKHSPVTQCLLEKS 209

Query: 172 VDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQR 229
           + G  E+   VM DA+ +   I V   + +   +   + +S  V P++ +    Y+ ++ 
Sbjct: 210 IAGFKEIEYEVMRDANDNA--IVVCNMENFD-PVGIHTGDSIVVAPSQTLSDREYQLLRN 266

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
            +    +A+   G        DP S + + +E+N  P ++  S     +   GY   +L 
Sbjct: 267 ASLTIIRALKIEGGCNVQLALDPESFQYYVIEVN--PRVSRSS--ALASKATGYPIAKLA 322

Query: 290 LWM 292
             +
Sbjct: 323 AKI 325


>gi|291546566|emb|CBL19674.1| acetyl-CoA carboxylase, biotin carboxylase [Ruminococcus sp. SR1/5]
          Length = 454

 Score = 71.7 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 78/220 (35%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  FG   E+     + E   I +         +  +K  ++  + + GVPV P    
Sbjct: 77  AIHPGFGFLSENARFAELCEKCGITFVGPPSKVIRMLGNKKIARSTMIAAGVPVVPGSEG 136

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
           +   ++        I  P +IK   GG   G+ V    +  P     +   +        
Sbjct: 137 DVEDIETGLKEAERIGYPVIIKAALGGGGKGMRVANTPEEFPEAYATARKESEIAFGDGT 196

Query: 166 LLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE + V+   +   ++ D+  +V  +            K           A +  ++ 
Sbjct: 197 MYIEHFVVNPRHIEFQILADSFGNVIHLGERDCSIQRNHQKMI----EESPSAAVSPELR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +++   A  A +A G       +FL +P   K +++E+N 
Sbjct: 253 EKMGHAAVTAAKAAGYVNAGTIEFLLEP-DGKFWFMEMNT 291


>gi|270290262|ref|ZP_06196487.1| carbamoyl-phosphate synthase large subunit [Pediococcus
           acidilactici 7_4]
 gi|270281043|gb|EFA26876.1| carbamoyl-phosphate synthase large subunit [Pediococcus
           acidilactici 7_4]
          Length = 819

 Score = 71.7 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 51/298 (17%), Positives = 108/298 (36%), Gaps = 45/298 (15%)

Query: 19  GKACASALE-DAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ-------- 69
             +    L+    F V+++ V+ ++  +L   + D+   V+    G  G +Q        
Sbjct: 50  ANSVIPQLDVPINFIVTELTVN-NLIQILREHEIDVILPVV----GNTGGLQLAEQLNES 104

Query: 70  AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPP 127
            IL+ L I              +     +V+     P+ P+ +V   +  +     +  P
Sbjct: 105 GILKELNIRTMGVTTTTIHNINNPELMNKVLRHIKEPIIPTTVVENEKNAVMFAKRVGFP 164

Query: 128 YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN--HGDQLLIEQYVDG---IELTC--- 179
            +IKP+   S      IK D    L  +  +++     +Q+ +E+ V G   IE+T    
Sbjct: 165 VLIKPIA--SLTKTNRIKCDNEHQLQEVLETAFKVSTTNQVAVEKSVVGYKEIEMTVIRD 222

Query: 180 ----GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
                ++ + + D+  I V   D   +    +  ++             +E++  A    
Sbjct: 223 AEGSKLLINGAEDLNPIGVHSGDSIIFSPTQTLTDTEF-----------QELRASALKIT 271

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           + +  +G+    +  DP + K F   IN        + F   A   GY    ++  ++
Sbjct: 272 EVLKIKGVCHVQYALDPTNGKYFVTRINPF--FDRTTAF--AARATGYPVATVVAEIL 325


>gi|254468615|ref|ZP_05082021.1| carbamoyl-phosphate synthase, large subunit [beta proteobacterium
           KB13]
 gi|207087425|gb|EDZ64708.1| carbamoyl-phosphate synthase, large subunit [beta proteobacterium
           KB13]
          Length = 1064

 Score = 71.7 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 37/263 (14%), Positives = 96/263 (36%), Gaps = 29/263 (11%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAI---- 71
           AL++ G++   +         D D S  L    +  +    ++H     DG++       
Sbjct: 582 ALKEEGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIIHIEN-PDGVIVQYGGQT 640

Query: 72  -------LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ--H 122
                  LE   +    +      ++ D+ R ++++   G+   P+          Q   
Sbjct: 641 PLKLAKGLEAAGVKIVGTTPEDIDVAEDRERFQKILVDLGLNQPPNRTARTPEEAIQLAA 700

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGV 181
            I  P V++P        + ++ ++  +   + ++   +H   +L+++++ D  E+    
Sbjct: 701 EIGYPLVVRPSYVLGGRAMEIVHEESDLQRYMTEAVKVSHESPVLLDRFLNDAQEIDVDA 760

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241
           + D    V    +   +       +S  ++  + P  +   I K++ +   +  +A+   
Sbjct: 761 ISDGEDVVVGGIMQHIEQAGV---HSGDSACSLPPFDLSETIQKDLIKQTKMLAKALKVN 817

Query: 242 GISRSDFLFDPLSRKVFWLEINV 264
           G+    F        ++ LE+N 
Sbjct: 818 GLMNIQFAI--QGDTIYILEVNP 838



 Score = 65.5 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 47/278 (16%), Positives = 98/278 (35%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFN 56
           SG     AL++ G++V  ++        D ++                ++A   PD    
Sbjct: 29  SGAQACKALKEEGYRVILVNSNPATIMTDPNLADATYIEPIQWDIVEKIIAKENPDAILP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      ILE   +    +   A   + D+   K+ ++  G+    S +
Sbjct: 89  TMGGQTALNCALDLDRHGILEKYNVELIGASKQAIDKAEDRQLFKEAMNKIGLSSARSAI 148

Query: 113 VNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +        Q  I  P +I+P       G  +            +    +  ++LLIE+
Sbjct: 149 AHSMEEAHQVQASIGYPVIIRPSFTMGGSGGGIAYNKDEFIEICERGLDASPTNELLIEE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + +   I   ++ D           +S  + PA+ +    Y+ +
Sbjct: 209 SLLGWKEYEMEVVRDKNDNCIIICSIENLDPMGVHT----GDSITIAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P   ++  +E+N 
Sbjct: 265 RSASIAVLREIGVDTGGSNVQFAINPSDGRMVVIEMNP 302


>gi|116670107|ref|YP_831040.1| pyruvate carboxylase [Arthrobacter sp. FB24]
 gi|116610216|gb|ABK02940.1| pyruvate carboxylase [Arthrobacter sp. FB24]
          Length = 1131

 Score = 71.7 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 42/250 (16%), Positives = 89/250 (35%), Gaps = 20/250 (8%)

Query: 28  DAGFKVS-QIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           + G  V   +DVD  V  V      D  +   +G   E+  +    +   I +       
Sbjct: 53  EEGHPVRAYLDVDE-VVRVAKESGADAIYPG-YGFLSENPRLARAAKEAGITFVGPPAEV 110

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD---SQHLISPPYVIKPLKGGSSLGIIV 143
             L+ +K+ + +   + GVPV  S   ++   +   +   I  P   K + GG   G+  
Sbjct: 111 LELAGNKVAALEAARAAGVPVLKSSQPSKDLDELIAAADEIGFPIFAKAVAGGGGRGMRR 170

Query: 144 IKKDQSIPLDLLQS-----SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD 198
           +   +++P  L  +     +++      L +  +    +   ++ DA  +V  +      
Sbjct: 171 VDTREALPEALQAAMREADAAFGDPTMFLEQAVLRPRHIEVQILADAEGNVMHLFERDCS 230

Query: 199 FYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS--- 254
                 K        + PA  +   I + + R A    +A+        +FL D +    
Sbjct: 231 IQRRHQK-----VIEIAPAPNLDEGIRQALYRDAVKFAKALNYVNAGTVEFLVDTVGERA 285

Query: 255 RKVFWLEINV 264
            +  ++E+N 
Sbjct: 286 GQHVFIEMNP 295


>gi|221504452|gb|EEE30125.1| acetyl-CoA carboxylase, putative [Toxoplasma gondii VEG]
          Length = 2612

 Score = 71.7 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 42/242 (17%), Positives = 85/242 (35%), Gaps = 29/242 (11%)

Query: 48  HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV 107
             K D  +    G+  E+  +   L  L I +        A   DK+ +  +  + GVP 
Sbjct: 421 QEKVDAVWPG-WGHASENPNLPRRLSELGITFIGPSATVMAALGDKIAANILAQTAGVPS 479

Query: 108 CPSI------------LVNRFTMDS------------QHLISPPYVIKPLKGGSSLGIIV 143
            P               + R   D                I  P +IK  +GG   GI +
Sbjct: 480 IPWSGDSLKATLDSTGAIPRDIFDQATVKSVEECEKVADRIGYPMMIKASEGGGGKGIRM 539

Query: 144 IKKDQSIPLDLLQSSSWNHGDQL-LIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSY 202
           + + + +     Q  +   G  + +++       +   ++GD       ++       S 
Sbjct: 540 VDRKEQVRGAYEQVVAEVPGSPVFMMQLCTAARHIEVQIVGDEDGQAVALS---GRDCST 596

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
           + ++  +         +P    KE+++ A    Q++G  G    ++L++    K F+LE+
Sbjct: 597 QRRFQKIFEEAPPTTVVPPHTMKEMEKAAQRLTQSLGYVGAGTVEYLYNRKDDKFFFLEL 656

Query: 263 NV 264
           N 
Sbjct: 657 NP 658


>gi|56476247|ref|YP_157836.1| acetyl-CoA carboxylase biotin carboxylase subunit [Aromatoleum
           aromaticum EbN1]
 gi|56312290|emb|CAI06935.1| putative biotin carboxylase protein [Aromatoleum aromaticum EbN1]
          Length = 454

 Score = 71.7 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 36/222 (16%), Positives = 77/222 (34%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         L  DK+ +K  + + GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAERVEQSGFVFIGPRSDTIRLMGDKVSAKDAMKAAGVPCVPGSEG 136

Query: 112 ---LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GD 164
                 +  +     +  P +IK   GG   G+ V+  + ++   +  + +         
Sbjct: 137 ALPEEPKEIVKIARTVGYPVIIKAAGGGGGRGMRVVHTEAALLNAVATTRAEAEAAFGNP 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E++++    +   V+ D   +   +            K          PA  I   
Sbjct: 197 IVYMEKFLENPRHIEIQVLADEHGNAVYLGERDCSMQRRHQK-----VIEEAPAPGIDRK 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              +V      A + IG RG    +FL+   + + +++E+N 
Sbjct: 252 AIAKVGERCAEACRTIGYRGAGTFEFLY--ENDEFYFIEMNT 291


>gi|258542083|ref|YP_003187516.1| carbamoyl phosphate synthase large subunit [Acetobacter
           pasteurianus IFO 3283-01]
 gi|256633161|dbj|BAH99136.1| carbamoyl-phosphate synthase large subunit [Acetobacter
           pasteurianus IFO 3283-01]
 gi|256636218|dbj|BAI02187.1| carbamoyl-phosphate synthase large subunit [Acetobacter
           pasteurianus IFO 3283-03]
 gi|256639273|dbj|BAI05235.1| carbamoyl-phosphate synthase large subunit [Acetobacter
           pasteurianus IFO 3283-07]
 gi|256642327|dbj|BAI08282.1| carbamoyl-phosphate synthase large subunit [Acetobacter
           pasteurianus IFO 3283-22]
 gi|256645382|dbj|BAI11330.1| carbamoyl-phosphate synthase large subunit [Acetobacter
           pasteurianus IFO 3283-26]
 gi|256648437|dbj|BAI14378.1| carbamoyl-phosphate synthase large subunit [Acetobacter
           pasteurianus IFO 3283-32]
 gi|256651490|dbj|BAI17424.1| carbamoyl-phosphate synthase large subunit [Acetobacter
           pasteurianus IFO 3283-01-42C]
 gi|256654481|dbj|BAI20408.1| carbamoyl-phosphate synthase large subunit [Acetobacter
           pasteurianus IFO 3283-12]
          Length = 1084

 Score = 71.7 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 46/278 (16%), Positives = 95/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D                V  ++   KPD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPGLADATYVEPITPEVVERIILKEKPDAVLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +       L    +    +       + D+ + ++ + + G+    S +
Sbjct: 89  TMGGQTALNTAMALHASGFLTKHNVELIGADAEVIDRAEDRQKFRETMDAIGIESPRSFI 148

Query: 113 VNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +      D+   I  P +I+P       G  +    +     +L     +   ++L+E+
Sbjct: 149 AHTLAEAHDALKQIGFPSIIRPSFTMGGSGGGIAYNREEFDQIVLSGLDASPTTEVLVEE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPA-KIPLDIYKEV 227
            V G  E    V+ D + +   I   ++ D           +S  V PA  +    Y+ +
Sbjct: 209 SVLGWKEYEMEVVRDKADNCIIICSIENIDPMGVHT----GDSITVAPALTLTDKEYQRM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    +AIG   G S   F  +P   ++  +E+N 
Sbjct: 265 RDASIACLRAIGVETGGSNVQFGINPKDGRMVVIEMNP 302



 Score = 52.4 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 32/220 (14%), Positives = 79/220 (35%), Gaps = 16/220 (7%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           LE   IP   +   A   + D+ R + ++   G+    + +             +  P V
Sbjct: 659 LEAAGIPLLGTPADAIDRAEDRERFQTMLHKLGLRQPENGIARTPEEAEAVAEKVGYPVV 718

Query: 130 IKPLKGGSSLGIIVIKKDQSIP---LDLLQSSSWNH-GDQLLIEQYV-DGIELTCGVMGD 184
           ++P        + ++     +     D+L  +  +     +L+++Y+ + IE     + D
Sbjct: 719 VRPSYVLGGRAMEIVYDRNGLQRYMRDVLTMAGHDISSGPILLDRYLNEAIEADVDCIAD 778

Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244
            +       +   +       +S  ++  + P  +   I  E++       + +G  G+ 
Sbjct: 779 GTDVYVAGVMEHIEEAGI---HSGDSACALPPYTLSPAIVTELKAQTEAMARELGIVGL- 834

Query: 245 RSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
             +  +    +++F LE+N +   T     P +A   G  
Sbjct: 835 -MNVQYAIKDQEIFVLEVNPRASRT----VPFVAKATGVP 869


>gi|325981089|ref|YP_004293491.1| acetyl-CoA carboxylase, biotin carboxylase [Nitrosomonas sp. AL212]
 gi|325530608|gb|ADZ25329.1| acetyl-CoA carboxylase, biotin carboxylase [Nitrosomonas sp. AL212]
          Length = 453

 Score = 71.7 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 79/222 (35%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-SIL 112
            +H  +G   E+      +E     +         L  DK+ +K  + S GVP  P S  
Sbjct: 77  AIHPGYGFLSENADFAERVEKSGFVFIGPRSETIRLMGDKVSAKNAMKSAGVPCVPGSEG 136

Query: 113 VNRFTMDSQHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGD 164
                +D        I  P ++K   GG   G+ V+  + ++   ++    ++ S     
Sbjct: 137 ALPEDLDEIRKIVKEIGYPVILKAAGGGGGRGMRVVHTEAALSNAVVMTRNEAQSAFGNP 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            +  E++++    +   ++ D                   L+          PA  I   
Sbjct: 197 TVYAEKFLENPRHIEFQLLIDEHGHAV-----HLGERDCSLQRRHQKILEEAPAPGISEK 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +  ++      A + I  RG+   +FLF   + + +++E+N 
Sbjct: 252 LRNKIGERCADACRRIKYRGVGTFEFLF--ENNEFYFIEMNT 291


>gi|237841327|ref|XP_002369961.1| acetyl-CoA carboxylase, putative [Toxoplasma gondii ME49]
 gi|211967625|gb|EEB02821.1| acetyl-CoA carboxylase, putative [Toxoplasma gondii ME49]
          Length = 2599

 Score = 71.7 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 42/242 (17%), Positives = 85/242 (35%), Gaps = 29/242 (11%)

Query: 48  HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV 107
             K D  +    G+  E+  +   L  L I +        A   DK+ +  +  + GVP 
Sbjct: 421 QEKVDAVWPG-WGHASENPNLPRRLSELGITFIGPSATVMAALGDKIAANILAQTAGVPS 479

Query: 108 CPSI------------LVNRFTMDS------------QHLISPPYVIKPLKGGSSLGIIV 143
            P               + R   D                I  P +IK  +GG   GI +
Sbjct: 480 IPWSGDSLKATLDSTGAIPRDIFDQATVKSVEECEKVADRIGYPMMIKASEGGGGKGIRM 539

Query: 144 IKKDQSIPLDLLQSSSWNHGDQL-LIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSY 202
           + + + +     Q  +   G  + +++       +   ++GD       ++       S 
Sbjct: 540 VDRKEQVRGAYEQVVAEVPGSPVFMMQLCTAARHIEVQIVGDEDGQAVALS---GRDCST 596

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
           + ++  +         +P    KE+++ A    Q++G  G    ++L++    K F+LE+
Sbjct: 597 QRRFQKIFEEAPPTTVVPPHTMKEMEKAAQRLTQSLGYVGAGTVEYLYNRKDDKFFFLEL 656

Query: 263 NV 264
           N 
Sbjct: 657 NP 658


>gi|294809687|ref|ZP_06768376.1| biotin carboxylase [Bacteroides xylanisolvens SD CC 1b]
 gi|294443111|gb|EFG11889.1| biotin carboxylase [Bacteroides xylanisolvens SD CC 1b]
          Length = 537

 Score = 71.7 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 82/220 (37%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       +   I +            DK+ ++  +   GVPV P    
Sbjct: 110 AIHPGYGFLSENATFARRCQEEGIIFIGPNPETMEAMGDKIAARIKMIEAGVPVVPGTQD 169

Query: 114 NRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
           N  +++      + I  P ++K   GG   G+ +I   + +      + S +      D 
Sbjct: 170 NLKSVEEAVELCNKIGYPVMLKASMGGGGKGMRLIHSAEEVEEAYTTAKSESLSSFGDDT 229

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E++V+    +   ++GD   +V  +   +        K             +  ++ 
Sbjct: 230 VYLEKFVEEPHHIEFQILGDKHGNVIHLCERECSVQRRNQKI----VEETPSVFVTPELR 285

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K++   A  A +A+   G    +FL D   R  ++LE+N 
Sbjct: 286 KDMGEKAVAAAKAVNYIGAGTIEFLVDKH-RNYYFLEMNT 324


>gi|212637172|ref|YP_002313697.1| ATP-binding:carbamoyl-phosphate synthetase large subunit [Shewanella
            piezotolerans WP3]
 gi|212558656|gb|ACJ31110.1| Carbamoyl-phosphate synthase L chain, ATP-binding:Carbamoyl-phosphate
            synthetase large chain, Biotin carboxylase [Shewanella
            piezotolerans WP3]
          Length = 1517

 Score = 71.7 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 34/221 (15%), Positives = 84/221 (38%), Gaps = 18/221 (8%)

Query: 57   VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
             LH   G   E     A+     + +    + +     +K  + +      VPV P    
Sbjct: 1018 ALHPGIGFLSESPQFAALCVNNGVNFVGPSVHSMTTMGNKSNAIKTSQDQDVPVVPGSHG 1077

Query: 111  -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL-----DLLQSSSWNHGD 164
             +      ++    I  P ++K ++GG   GI V+++ + +           ++++ +GD
Sbjct: 1078 ILTNAEQAVNVATEIGYPVLLKAVQGGGGKGIQVVERPEDMIELFQKTSTEAAAAFGNGD 1137

Query: 165  QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
              L E+YV     +   ++ D   +   + +          K    + + +    +P ++
Sbjct: 1138 LYL-EKYVTSLRHIEVQLLRDQFGNTKVLGLRDCSVQRNNQKVVEESGSTM----LPDEL 1192

Query: 224  YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             ++V         A    G    +F+++  + +V+++E+N 
Sbjct: 1193 KQKVMEYTRALGDATDYMGAGTVEFIYNLDANEVYFMEMNT 1233


>gi|295706345|ref|YP_003599420.1| carbamoyl-phosphate synthase large subunit [Bacillus megaterium DSM
           319]
 gi|294804004|gb|ADF41070.1| carbamoyl-phosphate synthase, large subunit [Bacillus megaterium
           DSM 319]
          Length = 1070

 Score = 71.7 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 35/229 (15%), Positives = 81/229 (35%), Gaps = 18/229 (7%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           LE   +    + + +   + D+ + +  ++   VP      V      +     I  P +
Sbjct: 646 LEARGVKILGTSLESLDAAEDRKKFEATLARLEVPQPLGKTVTSVEEAVVVAKEIGYPVL 705

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           ++P        + ++ K++ +   +  +   +    +LI++Y+ G E+    + D    V
Sbjct: 706 VRPSYVLGGRAMEIVYKEEELLHYMEHAVKVHADHPVLIDRYLTGKEIEVDAISDGETVV 765

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               +   +           +S  V P + +  D+   +        + +   G+    F
Sbjct: 766 IPGIMEHVERAGVHS----GDSIAVYPPQTLSQDVKDTIIDYTTRIAKGLNIIGLLNIQF 821

Query: 249 LFDPLSRKVFWLEIN-----VQPGMTPVSIFPEMAAYA----GYSFREL 288
           +      +VF LE+N       P ++ ++  P          G S REL
Sbjct: 822 VLSK--GEVFVLEVNPRSSRTVPFLSKITRIPMANVATKVILGTSLREL 868



 Score = 64.8 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 53/303 (17%), Positives = 117/303 (38%), Gaps = 37/303 (12%)

Query: 19  GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57
            +AC  AL++ G+KV  ++ +                       V  ++   +PD     
Sbjct: 31  AQACI-ALKEEGYKVILVNSNPATIMTDSEMADKVYIEPLTVEFVSSIIRKERPDALLPT 89

Query: 58  LHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
           L G  G +  V+     ILE   +    + + A   + D+ + + +++    PV  S ++
Sbjct: 90  LGGQTGLNLAVELHETGILEEFNVEILGTKLSAIEQAEDREQFRSLMNELNQPVPASEII 149

Query: 114 NRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
           +           ++ P +++P       G  +   +Q +   +      +   Q L+E+ 
Sbjct: 150 HSLDEAYAFVEQVNYPVIVRPAYTLGGTGGGICNNEQELIEIVTSGLKHSPVTQCLLEKS 209

Query: 172 VDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQR 229
           + G  E+   VM DA+ +   I V   + +   +   + +S  V P++ +    Y+ ++ 
Sbjct: 210 IAGFKEIEYEVMRDANDNA--IVVCNMENFD-PVGIHTGDSIVVAPSQTLSDREYQLLRN 266

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
            +    +A+   G        DP S + + +E+N  P ++  S     +   GY   +L 
Sbjct: 267 ASLTIIRALKIEGGCNVQLALDPESFQYYVIEVN--PRVSRSS--ALASKATGYPIAKLA 322

Query: 290 LWM 292
             +
Sbjct: 323 AKI 325


>gi|269958656|ref|YP_003328443.1| propionyl-CoA carboxylase alpha chain [Anaplasma centrale str.
           Israel]
 gi|269848485|gb|ACZ49129.1| propionyl-CoA carboxylase alpha chain [Anaplasma centrale str.
           Israel]
          Length = 659

 Score = 71.7 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 40/240 (16%), Positives = 85/240 (35%), Gaps = 16/240 (6%)

Query: 34  SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDK 93
           S +D+ + +  V      D      +G   E+      L    I +      +  +  DK
Sbjct: 59  SYLDIGK-ICTVAEETGVDAVHPG-YGFLSENAEFPDRLSECGIGFIGPAPSSMRMMSDK 116

Query: 94  MRSKQVVSSCGVPVCPSIL-VNRFTMDSQHL---ISPPYVIKPLKGGSSLGIIVIKKDQS 149
           + SK+V    GV V P  + V     D++ +   I  P +IK   GG   G+ V+K  + 
Sbjct: 117 VVSKRVAQDAGVAVVPGYMGVVESPADAKKIAESIGFPVMIKAAAGGGGKGMRVVKSAKE 176

Query: 150 IPLDLL----QSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYEL 204
           +    +    ++S      ++ IE+Y++    +   ++ D   +V  +   +        
Sbjct: 177 MEQAFVSATNEASKSFSDGRIFIEKYIEFPRHIEVQIVADKHGNVVCLGERECSIQRNNQ 236

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K             +     + +        + +    +   +F+ D      ++LE+N 
Sbjct: 237 K----VIEETPSPFLDKKTRQSMYAQCVNLVKRVNYFSVGTVEFVVDAEKN-FYFLEMNT 291


>gi|269103645|ref|ZP_06156342.1| biotin carboxylase of acetyl-CoA carboxylase [Photobacterium
           damselae subsp. damselae CIP 102761]
 gi|268163543|gb|EEZ42039.1| biotin carboxylase of acetyl-CoA carboxylase [Photobacterium
           damselae subsp. damselae CIP 102761]
          Length = 447

 Score = 71.7 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 81/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         L  DK+ +   +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAEQVERSGFIFVGPKAETIRLMGDKVSAINAMKKAGVPCVPGSDG 136

Query: 112 -LVNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
            L N    +      I  P +IK   GG   G+ V++ ++ I   +     ++ +  + D
Sbjct: 137 PLGNDEDKNKAIAKRIGYPVIIKASGGGGGRGMRVVRNEKEIVEAIAMTRAEAKACFNND 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+Y++    +   V+ D   +   +            K          PA  I  +
Sbjct: 197 MVYMEKYLENPRHIEVQVLADGQGNAIHLGERDCSMQRRHQK-----VVEEAPAPGITEE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + K +      A   IG RG    +FL+   + + +++E+N 
Sbjct: 252 MRKYIGERCTRACIEIGYRGAGTFEFLY--ENGEFYFIEMNT 291


>gi|261198318|ref|XP_002625561.1| carbamoyl-phosphate synthase large subunit [Ajellomyces
           dermatitidis SLH14081]
 gi|239595524|gb|EEQ78105.1| carbamoyl-phosphate synthase large subunit [Ajellomyces
           dermatitidis SLH14081]
          Length = 1182

 Score = 71.7 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 56/291 (19%), Positives = 107/291 (36%), Gaps = 41/291 (14%)

Query: 6   GGIS----SEREVSLSSGKACASALEDAGF--------------------KVSQIDVDRS 41
           GG+S     E + S   G     AL++AG                     +V  + V   
Sbjct: 114 GGLSIGQAGEFDYS---GSQALKALKEAGVKSVLINPNIATIQTDHKLADEVYYLPVTPE 170

Query: 42  -VGLVLAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRS 96
            V  V+   +PD  F    G    +  VQ     I +   +    + I    +S D+   
Sbjct: 171 YVTHVIERERPDGIFLTFGGQTALNLGVQMNRMGIFDRYGVKVLGTSIRTLEVSEDRDLF 230

Query: 97  KQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154
            + ++   +P+  S+ VN     +++   I  P +++       LG       + +    
Sbjct: 231 SKALNEINIPIAESVAVNSVDEALEAAEKIGYPIIVRSAYALGGLGSGFANNAEELK--N 288

Query: 155 LQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTH 213
           L S S     Q+L+E+ + G  E+   V+ DA+ +   I V   + +   L   + +S  
Sbjct: 289 LSSRSLTLAPQILVEKSLKGWKEVEYEVVRDAANN--CITVCNMENFD-PLGIHTGDSIV 345

Query: 214 VLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
           V P++ +  + Y  ++  A    + +G  G     +   P       +E+N
Sbjct: 346 VAPSQTLSDEEYHMLRTAAIKIVRHLGVVGECNVQYALQPDGLDYRVIEVN 396



 Score = 57.1 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/168 (16%), Positives = 63/168 (37%), Gaps = 6/168 (3%)

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVI 130
           E        +       + D+ +  Q++ S GV       ++           +  P ++
Sbjct: 744 ETGGAKVLGTDPKDIDKAEDRHKFSQILDSIGVDQPAWKELSSVAEAEAFADSVGYPVLV 803

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190
           +P    S   + VI+    +   L+ +S+ +    ++I Q+++G +    +  DA     
Sbjct: 804 RPSYVLSGAAMSVIRSHDELKDKLISASAVSPDHPVVITQFIEGAQE---IDVDAVASAG 860

Query: 191 EIAVPKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQA 237
           ++ V     +       S ++T V  PA +   I   V+ +A    +A
Sbjct: 861 KLIVHAVSEHVEAAGVHSGDATLVLPPANLEPAIIARVKEIAEKVAKA 908


>gi|24652218|ref|NP_724841.1| CG1516, isoform I [Drosophila melanogaster]
 gi|24652220|ref|NP_724842.1| CG1516, isoform J [Drosophila melanogaster]
 gi|24652222|ref|NP_724843.1| CG1516, isoform K [Drosophila melanogaster]
 gi|24652224|ref|NP_724844.1| CG1516, isoform L [Drosophila melanogaster]
 gi|281363050|ref|NP_001163103.1| CG1516, isoform M [Drosophila melanogaster]
 gi|21645486|gb|AAG22289.2| CG1516, isoform I [Drosophila melanogaster]
 gi|21645487|gb|AAM71032.1| CG1516, isoform J [Drosophila melanogaster]
 gi|21645488|gb|AAM71033.1| CG1516, isoform K [Drosophila melanogaster]
 gi|21645489|gb|AAM71034.1| CG1516, isoform L [Drosophila melanogaster]
 gi|272432417|gb|ACZ94380.1| CG1516, isoform M [Drosophila melanogaster]
          Length = 1197

 Score = 71.7 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 32/205 (15%), Positives = 80/205 (39%), Gaps = 17/205 (8%)

Query: 69  QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLI 124
           QA+++   + +            DK+ ++      GVP+ P     +      ++     
Sbjct: 131 QAVID-AGLRFIGPSPEVVQKMGDKVAARVAAIEAGVPIVPGTDGPVTTKEEALEFCKKH 189

Query: 125 SPPYVIKPLKGGSSLGIIVIKK----DQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTC 179
             P + K   GG   G+ V++K    ++S      ++ +      + IE++++    +  
Sbjct: 190 GLPVIFKAAYGGGGRGMRVVRKMEDVEESFQRASSEAKAAFGNGAMFIEKFIERPRHIEV 249

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAI 238
            ++GD + +V  +           ++        + PA ++P++I  ++   A    + +
Sbjct: 250 QLLGDKAGNVVHLYE-----RDCSVQRRHQKVVEIAPAPRLPIEIRDKMTEAAVRLARHV 304

Query: 239 GCRGISRSDFLFDPLSRKVFWLEIN 263
           G       +FL D      +++E+N
Sbjct: 305 GYENAGTVEFLCDESGN-FYFIEVN 328


>gi|115350560|ref|YP_772399.1| acetyl-CoA carboxylase biotin carboxylase subunit [Burkholderia
           ambifaria AMMD]
 gi|170699983|ref|ZP_02891010.1| acetyl-CoA carboxylase, biotin carboxylase [Burkholderia ambifaria
           IOP40-10]
 gi|172059591|ref|YP_001807243.1| acetyl-CoA carboxylase biotin carboxylase subunit [Burkholderia
           ambifaria MC40-6]
 gi|115280548|gb|ABI86065.1| acetyl-CoA carboxylase, biotin carboxylase [Burkholderia ambifaria
           AMMD]
 gi|170135131|gb|EDT03432.1| acetyl-CoA carboxylase, biotin carboxylase [Burkholderia ambifaria
           IOP40-10]
 gi|171992108|gb|ACB63027.1| acetyl-CoA carboxylase, biotin carboxylase [Burkholderia ambifaria
           MC40-6]
          Length = 455

 Score = 71.7 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 80/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H  +G   E+      +E     +         +  DK+ +KQ +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAERVEQSGFTFIGPRPETIRMMGDKVTAKQTMIKTGVPCVPGSEG 136

Query: 113 ----VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
                 +  +     I  P +IK   GG   G+ V+  + ++   +     ++       
Sbjct: 137 ALPDDPKEIVKIARTIGYPVIIKAAGGGGGRGMRVVHTEAALVNAVNMTREEAGRAFGNP 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
           Q+ +E++++    +   V+ DA  +   +            K          PA  IP  
Sbjct: 197 QVYMEKFLENPRHIEIQVLSDAHKNAIWLGERDCSMQRRHQK-----VIEEAPAPGIPRR 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + + +      A + +G  G    +FL+   + + +++E+N 
Sbjct: 252 LIERIGDRCADACKKMGYLGAGTFEFLY--ENNEFYFIEMNT 291


>gi|296108893|ref|YP_003615842.1| phosphoribosylglycinamide formyltransferase 2 [Methanocaldococcus
           infernus ME]
 gi|295433707|gb|ADG12878.1| phosphoribosylglycinamide formyltransferase 2 [Methanocaldococcus
           infernus ME]
          Length = 385

 Score = 71.7 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 34/237 (14%), Positives = 91/237 (38%), Gaps = 22/237 (9%)

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPY-THSGILASALSMDKMRSKQV 99
           S+  ++   +PD     +         ++A+ +   + Y       A  ++M++   +++
Sbjct: 63  SLMAIIEREEPDYIVPEIEAIN-----IEALKDAESLGYKVIPNSEAVEITMNRELIRRL 117

Query: 100 VSS-CGVPVCPSILVNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD--L 154
            +    V        +      ++   +  P V+KP+   S  G  V++K++ I     +
Sbjct: 118 AAEKLKVKTARYSFASNLEELKEAVEKLGFPCVVKPIMSSSGKGQSVVRKEEDIEKAYRI 177

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHV 214
            +  +   GD++++E++++  +    ++   ++  T    P           S       
Sbjct: 178 AREGARGRGDRVIVEEFIN-FDYELTILTARTVYGTYCCQPIGHVQE-----SGDYIESW 231

Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP---GM 268
            P  +  ++ K+ + +A      +G  GI   +        +V + E++ +P   GM
Sbjct: 232 QPHSVSEEVRKKAEEIAKKVVDKLGGYGIFGVELFV--KGDEVIFSEVSPRPHDTGM 286


>gi|260596124|ref|YP_003208695.1| acetyl-CoA carboxylase biotin carboxylase subunit [Cronobacter
           turicensis z3032]
 gi|260215301|emb|CBA27247.1| Biotin carboxylase [Cronobacter turicensis z3032]
          Length = 449

 Score = 71.7 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 42/222 (18%), Positives = 81/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         L  DK+ +   +   GVP  P    
Sbjct: 77  AIHPGYGFLSENANFAEQVERSGFIFIGPKADTIRLMGDKVSAITAMKKAGVPTVPGSDG 136

Query: 112 -LVNRFTMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
            L +    +  H   I  P +IK   GG   G+ V++ D  +   +     ++ +    D
Sbjct: 137 PLGDDMDKNRAHAKRIGYPVIIKASGGGGGRGMRVVRSDAELAQSISMTKAEAKAAFSND 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+Y++    +   V+ D   +   +A           K          PA  I  +
Sbjct: 197 MVYMEKYLENPRHIEIQVLADGQGNAIYLAERDCSMQRRHQK-----VVEEAPAPGITPE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + + +      A   IG RG    +FLF   + + +++E+N 
Sbjct: 252 LRRYIGERCAKACVDIGYRGAGTFEFLF--ENGEFYFIEMNT 291


>gi|239607851|gb|EEQ84838.1| carbamoyl-phosphate synthase large subunit [Ajellomyces
           dermatitidis ER-3]
 gi|327355792|gb|EGE84649.1| carbamoyl-phosphate synthase subunit arginine-specific large
           [Ajellomyces dermatitidis ATCC 18188]
          Length = 1182

 Score = 71.7 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 56/291 (19%), Positives = 107/291 (36%), Gaps = 41/291 (14%)

Query: 6   GGIS----SEREVSLSSGKACASALEDAGF--------------------KVSQIDVDRS 41
           GG+S     E + S   G     AL++AG                     +V  + V   
Sbjct: 114 GGLSIGQAGEFDYS---GSQALKALKEAGVKSVLINPNIATIQTDHKLADEVYYLPVTPE 170

Query: 42  -VGLVLAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRS 96
            V  V+   +PD  F    G    +  VQ     I +   +    + I    +S D+   
Sbjct: 171 YVTHVIERERPDGIFLTFGGQTALNLGVQMNRMGIFDRYGVKVLGTSIRTLEVSEDRDLF 230

Query: 97  KQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154
            + ++   +P+  S+ VN     +++   I  P +++       LG       + +    
Sbjct: 231 SKALNEINIPIAESVAVNSVDEALEAAEKIGYPIIVRSAYALGGLGSGFANNAEELK--N 288

Query: 155 LQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTH 213
           L S S     Q+L+E+ + G  E+   V+ DA+ +   I V   + +   L   + +S  
Sbjct: 289 LSSRSLTLAPQILVEKSLKGWKEVEYEVVRDAANN--CITVCNMENFD-PLGIHTGDSIV 345

Query: 214 VLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
           V P++ +  + Y  ++  A    + +G  G     +   P       +E+N
Sbjct: 346 VAPSQTLSDEEYHMLRTAAIKIVRHLGVVGECNVQYALQPDGLDYRVIEVN 396



 Score = 57.1 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/168 (16%), Positives = 63/168 (37%), Gaps = 6/168 (3%)

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVI 130
           E        +       + D+ +  Q++ S GV       ++           +  P ++
Sbjct: 744 ETGGAKVLGTDPKDIDKAEDRHKFSQILDSIGVDQPAWKELSSVAEAEAFADSVGYPVLV 803

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190
           +P    S   + VI+    +   L+ +S+ +    ++I Q+++G +    +  DA     
Sbjct: 804 RPSYVLSGAAMSVIRSHDELKDKLISASAVSPDHPVVITQFIEGAQE---IDVDAVASAG 860

Query: 191 EIAVPKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQA 237
           ++ V     +       S ++T V  PA +   I   V+ +A    +A
Sbjct: 861 KLIVHAVSEHVEAAGVHSGDATLVLPPANLEPAIIARVKEIAEKVAKA 908


>gi|58390932|ref|XP_318078.2| AGAP004742-PB [Anopheles gambiae str. PEST]
 gi|55236884|gb|EAA13216.3| AGAP004742-PB [Anopheles gambiae str. PEST]
          Length = 1180

 Score = 71.7 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 30/205 (14%), Positives = 79/205 (38%), Gaps = 17/205 (8%)

Query: 69  QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLI 124
           QA+++   + +            DK+ +++     GVP+ P     +      ++     
Sbjct: 130 QAVID-AGLRFIGPSPKVVQQMGDKVAARKAAIEAGVPIVPGTDGPVTTKEEAVEFCRKH 188

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSWNHGDQLLIEQYVD-GIELTC 179
             P + K   GG   G+ V++K   +         ++ +      + IE++++    +  
Sbjct: 189 GLPVIFKAAYGGGGRGMRVVRKMDEVEDNFMRASSEAKAAFGNGAMFIEKFIERPRHIEV 248

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAI 238
            ++GD + +V  +           ++        + PA ++P+++  ++   A    + +
Sbjct: 249 QLLGDKAGNVVHLYE-----RDCSVQRRHQKVVEIAPAPRLPIEVRDKMTEYAVRLARHV 303

Query: 239 GCRGISRSDFLFDPLSRKVFWLEIN 263
           G       +FL D      +++E+N
Sbjct: 304 GYENAGTVEFLCDESGN-FYFIEVN 327


>gi|330505737|ref|YP_004382606.1| pyruvate carboxylase subunit A [Pseudomonas mendocina NK-01]
 gi|328920023|gb|AEB60854.1| pyruvate carboxylase subunit A [Pseudomonas mendocina NK-01]
          Length = 471

 Score = 71.7 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 74/221 (33%), Gaps = 20/221 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            LH  +G   E+  +  I     I +            DK  +++ + + GVP  P    
Sbjct: 76  ALHPGYGFLSENAELAEICAERGIKFIGPSAEVIRRMGDKTEARRSMMAAGVPCTPGTEG 135

Query: 114 NRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGD 164
           N   +         I  P ++K   GG   GI      + +           + ++   +
Sbjct: 136 NVADLAEALREGERIGYPVMLKATSGGGGRGIRRCNSREELEQAYPRVISEATKAFGSAE 195

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDI 223
             L +  V+   +   ++ D+  +   +            K        + P  ++  + 
Sbjct: 196 VFLEKCIVNPKHIEAQILADSFGNTVHLYERDCSIQRRNQKL-----IEIAPSPQLTPEQ 250

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              +  LA  A QA+G       +FL      +V+++E+N 
Sbjct: 251 RAYIGDLAVRAAQAVGYENAGTVEFLL--AEGEVYFMEMNT 289


>gi|329114164|ref|ZP_08242926.1| Carbamoyl-phosphate synthase large chain [Acetobacter pomorum
           DM001]
 gi|326696240|gb|EGE47919.1| Carbamoyl-phosphate synthase large chain [Acetobacter pomorum
           DM001]
          Length = 1084

 Score = 71.7 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 46/278 (16%), Positives = 95/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D                V  ++   KPD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPGLADATYVEPITPEVVERIILKEKPDAVLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +       L    +    +       + D+ + ++ + + G+    S +
Sbjct: 89  TMGGQTALNTAMALHASGFLTKHNVELIGADAEVIDRAEDRQKFRETMDAIGIESPRSFI 148

Query: 113 VNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +      D+   I  P +I+P       G  +    +     +L     +   ++L+E+
Sbjct: 149 AHTLAEAHDALKQIGFPSIIRPSFTMGGSGGGIAYNREEFDQIVLSGLDASPTTEVLVEE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPA-KIPLDIYKEV 227
            V G  E    V+ D + +   I   ++ D           +S  V PA  +    Y+ +
Sbjct: 209 SVLGWKEYEMEVVRDKADNCIIICSIENIDPMGVHT----GDSITVAPALTLTDKEYQRM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    +AIG   G S   F  +P   ++  +E+N 
Sbjct: 265 RDASIACLRAIGVETGGSNVQFGINPKDGRMVVIEMNP 302



 Score = 52.4 bits (125), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 32/220 (14%), Positives = 79/220 (35%), Gaps = 16/220 (7%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           LE   IP   +   A   + D+ R + ++   G+    + +             +  P V
Sbjct: 659 LEAAGIPLLGTPADAIDRAEDRERFQTMLHKLGLRQPENGIARTPEEAEAVAEKVGYPVV 718

Query: 130 IKPLKGGSSLGIIVIKKDQSIP---LDLLQSSSWNH-GDQLLIEQYV-DGIELTCGVMGD 184
           ++P        + ++     +     D+L  +  +     +L+++Y+ + IE     + D
Sbjct: 719 VRPSYVLGGRAMEIVYDRNGLQRYMRDVLTMAGHDISSGPILLDRYLNEAIEADVDCIAD 778

Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244
            +       +   +       +S  ++  + P  +   I  E++       + +G  G+ 
Sbjct: 779 GTDVYVAGVMEHIEEAGI---HSGDSACALPPYTLSPAIVTELKAQTEAMARELGIVGL- 834

Query: 245 RSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
             +  +    +++F LE+N +   T     P +A   G  
Sbjct: 835 -MNVQYAIKDQEIFVLEVNPRASRT----VPFVAKATGVP 869


>gi|302670200|ref|YP_003830160.1| carbamoyl-phosphate synthase large subunit CarB1 [Butyrivibrio
           proteoclasticus B316]
 gi|302394673|gb|ADL33578.1| carbamoyl-phosphate synthase large subunit CarB1 [Butyrivibrio
           proteoclasticus B316]
          Length = 1088

 Score = 71.7 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 31/220 (14%), Positives = 79/220 (35%), Gaps = 13/220 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYV 129
           L  + +    +       + D+    Q++    +       V       +  + +  P +
Sbjct: 669 LMKMGVKIYGTDAKDVDAAEDREIFDQILEETQIKRAQGATVYTAEEAKEVANRLGYPVL 728

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           ++P       G+ +   D+ I   +   + +     +L+++Y+ G+E     + D     
Sbjct: 729 VRPSYVLGGQGMQIALSDEEIEEFMNIINRYAQDHPILVDKYLQGVETEVDAVCDGE--- 785

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
            +I +P    +       S +S  V PA+ +   + + +        +A+   G+    F
Sbjct: 786 -DIVIPGIMEHIERSGIHSGDSISVYPAQSLSDKVKETIAEYTKRLAKALHVIGLINVQF 844

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           +   +  +V+ +E N +   T     P ++   G    +L
Sbjct: 845 I--AVGDEVYIIEANPRSSRT----VPYISKVTGIPIVDL 878



 Score = 60.1 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 44/287 (15%), Positives = 97/287 (33%), Gaps = 35/287 (12%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI-----------DVD----------RSVGLV 45
           G ++E + +   G     +L++ G +V  +           D+           + +  +
Sbjct: 21  GQAAEFDYA---GTQACRSLKEEGIEVVLVNSNPATIMTDKDIADEVYIEPLTVKVLEQI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   KPD     L G  G +  ++      L+   +    +       + D+   K  + 
Sbjct: 78  IEKEKPDSILPTLGGQAGLNLGMELDESGFLKSHGVKLLGTTAETIRKAEDRQEFKDTME 137

Query: 102 SCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G P   S++V+     +     I  P V++P       G  +          L     
Sbjct: 138 KIGEPCAASLVVHNVEDGISFAGKIGYPVVLRPAFTLGGSGGGIAYNAAQCREILENGLR 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +  +++L+E+ + G  E+   VM D    +       +      +   + +S  V P++
Sbjct: 198 LSRANEVLVERCIAGWKEIEYEVMRD---SLGNCITVCNMENIDPVGVHTGDSIVVAPSQ 254

Query: 219 -IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +    Y+ ++  A      +   G     F   P S +   +E+N 
Sbjct: 255 TLSDKEYQMLRSAALNIIDELKITGGCNVQFALHPTSFEYCVIEVNP 301


>gi|328948049|ref|YP_004365386.1| ATP-grasp fold domain protein, DUF201-type [Treponema
           succinifaciens DSM 2489]
 gi|328448373|gb|AEB14089.1| ATP-grasp fold domain protein, DUF201-type [Treponema
           succinifaciens DSM 2489]
          Length = 522

 Score = 71.7 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 39/256 (15%), Positives = 94/256 (36%), Gaps = 29/256 (11%)

Query: 23  ASALEDAGFKVSQIDV----------DRSVGLVLAHLKPDLAFNVLHGNF-------GED 65
             A ++ G+K   ID           DR   + L      + F++  G         G D
Sbjct: 19  IEAAKELGYKALVIDANPDAVCVPFADRFEKIDLKDTNAIVDFSLSLGKNLCAVFTAGTD 78

Query: 66  GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-----LVNRFTMDS 120
                 L   +  +      ++  + +K+  ++      +P           +N F  + 
Sbjct: 79  FSAPVSLACQKCGFVSHSFESAMNASNKILMRECFKKNKIPSPDFFEADENYINLFQKNK 138

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC- 179
              I  P V+KP+    + G  +++        L  +  ++   + ++E +++G E +  
Sbjct: 139 TPEIHFPKVVKPVDNMGARGCRLVRNKDEFLPALKDAVCFSRTKKAIVEDFMEGPEFSID 198

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
            ++ +  + +   A     F  Y ++       H +P++I  +  +E+ ++   A  A+G
Sbjct: 199 ALVVNGKVIIAGFADRHIFFEPYFVELG-----HSMPSEISENKKQEIVKVFTDAVHALG 253

Query: 240 C-RGISRSDFLFDPLS 254
              G+++ D  +    
Sbjct: 254 LTNGVAKGDVKYTKQG 269


>gi|327460200|gb|EGF06537.1| carbamoyl-phosphate synthase, large subunit [Streptococcus
           sanguinis SK1057]
          Length = 1059

 Score = 71.7 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 23/224 (10%), Positives = 72/224 (32%), Gaps = 11/224 (4%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYV 129
           L    +    + +     + D+   +Q +    +P  P           ++   I  P +
Sbjct: 646 LSKAGVKILGTQVADLDRAEDRDLFEQALKELDIPQPPGQTATNEEEAVEAARKIGFPVL 705

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           ++P        + +++ +  +   +  +   +    +L++ Y+ G E     + D    +
Sbjct: 706 VRPSYVLGGRAMEIVENEADLRSYMRTAVKASPDHPVLVDSYIVGDECEVDAISDGRQVL 765

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
               +   +       +S  +     P  +   +   +          + C G+    F+
Sbjct: 766 IPGIMEHIERAGV---HSGDSMAAYPPQTLSHKVKDTIAEYTKRLALGLNCIGMMNIQFV 822

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
                 +V+ +E+N +   T     P ++        ++   ++
Sbjct: 823 I--KDEQVYVIEVNPRASRT----VPFLSKVTDIPMAQVATRLI 860



 Score = 66.3 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 37/206 (17%), Positives = 78/206 (37%), Gaps = 9/206 (4%)

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147
           + D+   KQ++   G P+  S +VN     ++    I  P +++P       G  +   +
Sbjct: 126 AEDRDLFKQLMEELGQPIPESEIVNTVDEALEFAAEIGYPVIVRPAFTLGGTGGGICSNE 185

Query: 148 QSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
           + +          +   Q LIE+ + G  E+   VM D + +   + V   + +     +
Sbjct: 186 EELQEIAENGLKLSPVTQCLIERSIAGFKEIEYEVMRDGADNA--LVVCNMENFDPVGIH 243

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
           +  +        I    Y+ ++  +    +A+   G        DP S K + +E+N  P
Sbjct: 244 TGDSIVFAPSQTISDYEYQMLRDASLKIIRALKIEGGCNVQLALDPHSFKYYVIEVN--P 301

Query: 267 GMTPVSIFPEMAAYAGYSFRELLLWM 292
            ++  S     +   GY   +L   +
Sbjct: 302 RVSRSS--ALASKATGYPIAKLAAKI 325


>gi|226939529|ref|YP_002794602.1| acetyl-CoA carboxylase biotin carboxylase subunit [Laribacter
           hongkongensis HLHK9]
 gi|226714455|gb|ACO73593.1| AccC [Laribacter hongkongensis HLHK9]
          Length = 450

 Score = 71.7 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 77/222 (34%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         L  DK+ +KQ +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAERVEQSGFVFIGPRAETIRLMGDKVSAKQAMIEAGVPCVPGSGG 136

Query: 112 LVNRFTMDS---QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
            +     +       I  P +IK   GG   G+ V+  + ++   +     ++ +     
Sbjct: 137 ALTDDPAEITKMAREIGYPVIIKAAGGGGGRGMRVVHSEAALINSVNMTKTEAQAAFGNP 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E++++    +   ++ D       +            K          PA  I   
Sbjct: 197 TVYMEKFLETPRHVEIQILADEYGHAIYLGERDCSMQRRHQK-----VIEEAPAPGITQK 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              +V      A + IG RG    +FL+   + + +++E+N 
Sbjct: 252 QRDKVGHACAEACRRIGYRGAGTFEFLY--ENGEFYFIEMNT 291


>gi|195475162|ref|XP_002089853.1| GE21984 [Drosophila yakuba]
 gi|194175954|gb|EDW89565.1| GE21984 [Drosophila yakuba]
          Length = 1197

 Score = 71.7 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 32/205 (15%), Positives = 80/205 (39%), Gaps = 17/205 (8%)

Query: 69  QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLI 124
           QA+++   + +            DK+ ++      GVP+ P     +      ++     
Sbjct: 131 QAVID-AGLRFIGPSPEVVQKMGDKVAARVAAIEAGVPIVPGTDGPVTTKEEALEFCKKH 189

Query: 125 SPPYVIKPLKGGSSLGIIVIKK----DQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTC 179
             P + K   GG   G+ V++K    ++S      ++ +      + IE++++    +  
Sbjct: 190 GLPVIFKAAYGGGGRGMRVVRKMEDVEESFQRASSEAKAAFGNGAMFIEKFIERPRHIEV 249

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAI 238
            ++GD + +V  +           ++        + PA ++P++I  ++   A    + +
Sbjct: 250 QLLGDKAGNVVHLYE-----RDCSVQRRHQKVVEIAPAPRLPIEIRDKMTEAAVRLARHV 304

Query: 239 GCRGISRSDFLFDPLSRKVFWLEIN 263
           G       +FL D      +++E+N
Sbjct: 305 GYENAGTVEFLCDESGN-FYFIEVN 328


>gi|218899040|ref|YP_002447451.1| carbamoyl-phosphate synthase, large subunit [Bacillus cereus G9842]
 gi|226700919|sp|B7IUP6|CARB_BACC2 RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|218541911|gb|ACK94305.1| carbamoyl-phosphate synthase, large subunit [Bacillus cereus G9842]
          Length = 1072

 Score = 71.7 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 53/315 (16%), Positives = 118/315 (37%), Gaps = 39/315 (12%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQIDVD---------------------RSVGLV 45
           G ++E + S   G     +L + G+KV  ++ +                       V  +
Sbjct: 21  GQAAEFDYS---GTQACQSLREEGYKVILVNSNPATIMTDTATADKVYIEPLTLEFVSRI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   +PD     L G  G +  V+     ILE   +    + + A   + D+   + ++ 
Sbjct: 78  IRKERPDAILPTLGGQTGLNMAVELAKSGILEECGVEILGTKLSAIEQAEDRDLFRTLMQ 137

Query: 102 SCGVPVCPSILVNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
               P+  S +++      +    I  P +++P       G  +   ++ +   +     
Sbjct: 138 ELNEPIPSSTIIHTLEEAHEFVKEIGYPVIVRPAFTMGGTGGGICSNEEELIEIVSGGLK 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   Q L+E+ + G  E+   VM D++ +   I V   +       ++  +S  V P++
Sbjct: 198 HSPVTQCLLEKSIAGCKEIEYEVMRDSNDNA--IVVCNMENIDPVGVHT-GDSIVVAPSQ 254

Query: 219 -IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
            +    Y+ ++  +    +A+G  G        DP S + + +E+N  P ++  S     
Sbjct: 255 TLSDREYQMLRNTSLRIIRALGIEGGCNVQLALDPHSFQYYVIEVN--PRVSRSS--ALA 310

Query: 278 AAYAGYSFRELLLWM 292
           +   GY   +L   +
Sbjct: 311 SKATGYPIAKLAAKI 325



 Score = 64.4 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/221 (11%), Positives = 80/221 (36%), Gaps = 20/221 (9%)

Query: 68  VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLIS 125
           + A LE   +    + +     + D+ + +  ++  G+P             +     I 
Sbjct: 642 LAAKLEEHGVKILGTSLEDLDRAEDRDKFEAALTQLGIPQPVGKTATTVEQAVAIAEEIG 701

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            P +++P        + ++ + + +   +  +   +    +LI++Y+ G E+    + D 
Sbjct: 702 YPVLVRPSYVLGGRAMEIVYRQEELLHYMKNAVKVHAEHPVLIDRYMVGKEIEVDAISDG 761

Query: 186 S---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCR 241
               +      + ++  +S        +S  V P + +   + +++        + +   
Sbjct: 762 ENVFIPGIMEHIERAGVHS-------GDSIGVYPPQSLSEKLKEQIIEHTIALGKGLNIV 814

Query: 242 GISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277
           G+    F+      +V+ +E+N       P ++ ++  P  
Sbjct: 815 GLLNIQFVVFK--DQVYVIEVNPRASRTVPFLSKITGVPMA 853


>gi|152997923|ref|YP_001342758.1| pyruvate carboxylase subunit A [Marinomonas sp. MWYL1]
 gi|150838847|gb|ABR72823.1| Carbamoyl-phosphate synthase L chain ATP-binding [Marinomonas sp.
           MWYL1]
          Length = 471

 Score = 71.7 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 31/221 (14%), Positives = 79/221 (35%), Gaps = 20/221 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     + E   + +            DK +++  + + G+P+ P    
Sbjct: 76  AIHPGYGFLSENAHFAELCEQKGVTFIGPHSSVIHKMGDKTQARDSMRAAGIPITPGSEG 135

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGDQ 165
            +      +     +  P +IK   GG   GI      + +    P  + +++      +
Sbjct: 136 NLANLEEALALAGRVGYPVMIKATSGGGGRGIRRCDTPEELTSQYPRVISEATKAFGSAE 195

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDI 223
           + +E+ + D   +   ++ D+  +   +            K        + P  ++  + 
Sbjct: 196 VFLEKCIVDPCHIEVQILADSHGNAIHLYERDCSIQRRNQKL-----IEIAPSPQLTPEQ 250

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +  LA  A +A+        +FL      +V+++E+N 
Sbjct: 251 RQYICDLAVRAAKAVDYVNAGTVEFLL--SGNEVYFMEMNT 289


>gi|46578579|ref|YP_009387.1| carbamoyl-phosphate synthase large subunit [Desulfovibrio vulgaris
           str. Hildenborough]
 gi|120603844|ref|YP_968244.1| carbamoyl-phosphate synthase, large subunit [Desulfovibrio vulgaris
           DP4]
 gi|46447990|gb|AAS94646.1| carbamoyl-phosphate synthase, large subunit [Desulfovibrio vulgaris
           str. Hildenborough]
 gi|120564073|gb|ABM29817.1| carbamoyl-phosphate synthase large subunit [Desulfovibrio vulgaris
           DP4]
 gi|311232504|gb|ADP85358.1| carbamoyl-phosphate synthase, large subunit [Desulfovibrio vulgaris
           RCH1]
          Length = 1077

 Score = 71.7 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 45/278 (16%), Positives = 98/278 (35%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G++V  +         D               +V  ++   +PD    
Sbjct: 29  SGTQAVKALKEEGYEVVLVNSNPATIMTDPGLADRTYIEPIEPETVAAIIRKERPDALLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G  G +  +      +L+   +    +       +  +   +  +++ G+ V  S +
Sbjct: 89  TLGGQTGLNTALALAASGVLDECGVELIGANRAVIEKAESRELFRLAMANIGLKVPASGI 148

Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                   +    +  P +I+P       G  +    + +     +  + +   +++IEQ
Sbjct: 149 ARSMDDVRRLGTEMPFPLIIRPAFTMGGTGGGIAYNMEDLEEIASRGLTASITSEVMIEQ 208

Query: 171 YVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            V G  E    VM D + + V   ++   D           +S  V PA+ +    Y+ +
Sbjct: 209 SVLGWKEYEMEVMRDKADNCVIICSIENFDPMGVHT----GDSITVAPAQTLTDVEYQMM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P +  +  +E+N 
Sbjct: 265 RDASIAIMREIGVETGGSNVQFGINPDNGDMVVIEMNP 302



 Score = 52.0 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 33/228 (14%), Positives = 79/228 (34%), Gaps = 10/228 (4%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
             V  ++   KPD       G    +  V   L+   +P   +   A   + D+ R + +
Sbjct: 628 EDVMHIIEAEKPDGVIVQFGGQTPLNLAVP--LQRAGVPILGTSPDAIDRAEDRERFQAL 685

Query: 100 VSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
           +    +    +  V   R  +   + I  P V++P        + ++  ++ +      S
Sbjct: 686 IHKLDLRQPANATVMNLRQAIAGANSIGYPVVVRPSYVLGGRAMEIVYDEEQLTSYFQNS 745

Query: 158 SSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216
                   +L++++++   E+    + D +       +   +       +S  ++  + P
Sbjct: 746 VGEAPEHPILLDKFLENATEVDVDALSDGTDVYVAGIMEHIEEAGI---HSGDSACSIPP 802

Query: 217 AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +P  I  E+ R      + +   G+    F        +F LE+N 
Sbjct: 803 YSLPSSITDEISRQTVALAKELRVVGLMNIQFAV--KDGVIFILEVNP 848


>gi|298714850|emb|CBJ25749.1| propionyl-CoA carboxylase, alpha subunit [Ectocarpus siliculosus]
          Length = 596

 Score = 71.7 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 46/262 (17%), Positives = 88/262 (33%), Gaps = 32/262 (12%)

Query: 19  GKACA----SALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAI 71
           G+A       AL+        +D D+ +   L           +H  +G   E+      
Sbjct: 98  GEAVCIGPPEALKS------YLDADKILDAALRTGAQ-----AIHPGYGFLSENASFAEA 146

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI--LVNRFTMDS--QHLISPP 127
            E   I +      A     DK+ SK++ +  GV   P    ++            I  P
Sbjct: 147 CEQAGIAFVGPPSGAIESMGDKIESKKIAAEAGVHTIPGFKGIIESGDEAVRIAEEIGYP 206

Query: 128 YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQLLIEQYV-DGIELTCGVM 182
            +IK   GG   G+ +    +       +S++         ++L+E+Y+ DG  +   V+
Sbjct: 207 VMIKASAGGGGKGMRIAYDAEDARSGFERSTAEAISSFGDGRMLVEKYIEDGHHIEIQVL 266

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D+  +V      +        K             I  ++   +Q  A +  +A G R 
Sbjct: 267 ADSHGNVAAFPERECSVQRRNQKVL----EESPSCLITPEVRAAMQEQAIMLSKATGYRS 322

Query: 243 ISRSDFLFDPLSRKVFWLEINV 264
               + +        ++LE+N 
Sbjct: 323 AGTVEMIC-ASDLSFYFLEMNT 343


>gi|258570823|ref|XP_002544215.1| methylcrotonoyl-CoA carboxylase subunit alpha [Uncinocarpus reesii
           1704]
 gi|237904485|gb|EEP78886.1| methylcrotonoyl-CoA carboxylase subunit alpha [Uncinocarpus reesii
           1704]
          Length = 551

 Score = 71.7 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 37/174 (21%), Positives = 66/174 (37%), Gaps = 13/174 (7%)

Query: 100 VSSCGVPVCPSILVNRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
           +++ GVP  P         D        I  P +IK +KGG   G+ +    ++    L+
Sbjct: 1   MTAAGVPCVPGYHGANQDPDFLQQEADKIGYPVLIKAIKGGGGKGMRICSSKETFQDQLM 60

Query: 156 QSSSWNH----GDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLN 210
            + S +      DQ+LIE+Y+     +   V  D   +   +            K     
Sbjct: 61  SAKSESRNSFGDDQVLIEKYITTPRHIEVQVFADKHGNCVALGERDCSIQRRHQKIL--- 117

Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
                   +P    K++   A  A  A+G  G    +F+FD  + + F++E+N 
Sbjct: 118 -EESPAPHLPQATRKDIWEKARAAALAVGYEGAGTVEFIFDNDTGEFFFMEMNT 170


>gi|329962904|ref|ZP_08300769.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Bacteroides
           fluxus YIT 12057]
 gi|328529319|gb|EGF56235.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Bacteroides
           fluxus YIT 12057]
          Length = 503

 Score = 71.7 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 86/223 (38%), Gaps = 23/223 (10%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+       +   I +            DK+ ++Q + + GVPV P    
Sbjct: 77  AIHPGYGFLSENAEFARRCKEEGIVFIGPSAETMEAMGDKIAARQRMIAAGVPVVPGTEQ 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
            +      M   + I  P ++K   GG   G+ +I  +  +      + S +      D 
Sbjct: 137 PLQSAGEAMRICNEIGYPVMLKASMGGGGKGMRLIHHEDEVVEAYNTARSESMSSFGDDT 196

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK---IPL 221
           + +E++V+    +   ++GD   +V  +       +  E      N   V  +    +  
Sbjct: 197 VYLEKFVEEPHHIEFQILGDNYGNVIHL-------FDRECSVQRRNQKIVEESPSPFLTP 249

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           ++ KE+   A  A +A+   G    +FL D  +R  ++LE+N 
Sbjct: 250 ELRKEMGEKAVAAAKAVNYSGAGTIEFLVDK-NRNFYFLEMNT 291


>gi|306839981|ref|ZP_07472775.1| acetyl-CoA carboxylase alpha chain / propionyl-CoA carboxylase
           alpha chain [Brucella sp. NF 2653]
 gi|306404945|gb|EFM61230.1| acetyl-CoA carboxylase alpha chain / propionyl-CoA carboxylase
           alpha chain [Brucella sp. NF 2653]
          Length = 612

 Score = 71.7 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 40/225 (17%), Positives = 74/225 (32%), Gaps = 22/225 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      +E   + +      A      K  +K ++   GVPV P    
Sbjct: 34  AIHPGYGFLSENPAFVDAVEEAGLIFIGPSAKAIRAMGLKDAAKALMEKAGVPVVPGYHG 93

Query: 114 NRFT----MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
           +             I+ P +IK   GG   G+  +         L     ++ +      
Sbjct: 94  DNQDGAFLKSEADRITYPVLIKARAGGGGKGMRRVDSAADFAAALESARREAEASFGDGA 153

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           +L+E+Y+     +   V GD   +               L+          PA  +  ++
Sbjct: 154 VLVEKYMAKPRHIEVQVFGDNHGNAV-----HLFERDCSLQRRHQKVIEEAPAPGMTEEM 208

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR----KVFWLEINV 264
              +   A  A  AIG  G    +F+ D        + F++E+N 
Sbjct: 209 RAAMGEAAVKAALAIGYSGAGTVEFIADVSEGLRPDRFFFMEMNT 253


>gi|285016970|ref|YP_003374681.1| acetyl-CoA carboxylase subunit A [Xanthomonas albilineans GPE PC73]
 gi|283472188|emb|CBA14695.1| probable biotin carboxylase, acetyl-coa carboxylase subunit a
           protein [Xanthomonas albilineans]
          Length = 669

 Score = 71.7 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 77/221 (34%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+           I +      A     +K  +K ++ +  VP+ P    
Sbjct: 84  AIHPGYGFLSENATFAEHCARRGIVFIGPPPAAIRAMGNKSAAKALMQAAAVPLTPGYHG 143

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
            R  M+        I  P +IK   GG   G+  +  +      L+    ++ +      
Sbjct: 144 ERQEMEFLRTQADAIGYPVLIKASAGGGGKGMRRVDHNADFATALVACQREAQAAFGNAH 203

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           +L+E+YV     +   V GD   +   +           ++          PA  +  + 
Sbjct: 204 VLVEKYVLRPRHIEIQVFGDQHGEFVYL-----FERDCSVQRRHQKVLEEAPAPGMREEQ 258

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              + + A  A +A+G  G    +F+  P     +++E+N 
Sbjct: 259 RAAMGQAAVEAARAVGYVGAGTVEFIVAP-DGAFYFMEMNT 298


>gi|254994165|ref|ZP_05276355.1| acetyl-CoA carboxylase biotin carboxylase subunit [Listeria
           monocytogenes FSL J2-064]
          Length = 413

 Score = 71.7 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 83/220 (37%), Gaps = 16/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     + E   I +      A +    K  +++ +   GVP+ P    
Sbjct: 36  AIHPGYGFLAENADFAELCEDCNITFIGPSASAISQMGTKDVARETMRKAGVPIVPGSQG 95

Query: 111 ILVN-RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
           I+ +          I  P +IK   GG   GI V + ++ +   +     ++ +      
Sbjct: 96  IVKDVEDGKKIAKKIGYPVIIKATAGGGGKGIRVAENEEKLISGIQTTQQEAEAAFGDPG 155

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+Y+     +   V+ D   +V  +            K    + +   PA I     
Sbjct: 156 VYLEKYIQDFRHVEIQVLADNHGNVIHLGERDCSIQRRLQKLIEESPS---PA-IDEKTR 211

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +++ + A  A +A+   G    +F+FD      +++E+N 
Sbjct: 212 QKMGKAAVKAAKAVNYSGAGTIEFIFDHHENNFYFMEMNT 251


>gi|195359264|ref|XP_002045332.1| GM24372 [Drosophila sechellia]
 gi|194127362|gb|EDW49405.1| GM24372 [Drosophila sechellia]
          Length = 1197

 Score = 71.7 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 32/205 (15%), Positives = 80/205 (39%), Gaps = 17/205 (8%)

Query: 69  QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLI 124
           QA+++   + +            DK+ ++      GVP+ P     +      ++     
Sbjct: 131 QAVID-AGLRFIGPSPEVVQKMGDKVAARVAAIEAGVPIVPGTDGPVTTKEEALEFCKKH 189

Query: 125 SPPYVIKPLKGGSSLGIIVIKK----DQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTC 179
             P + K   GG   G+ V++K    ++S      ++ +      + IE++++    +  
Sbjct: 190 GLPVIFKAAYGGGGRGMRVVRKMEDVEESFQRASSEAKAAFGNGAMFIEKFIERPRHIEV 249

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAI 238
            ++GD + +V  +           ++        + PA ++P++I  ++   A    + +
Sbjct: 250 QLLGDKAGNVVHLYE-----RDCSVQRRHQKVVEIAPAPRLPIEIRDKMTEAAVRLARHV 304

Query: 239 GCRGISRSDFLFDPLSRKVFWLEIN 263
           G       +FL D      +++E+N
Sbjct: 305 GYENAGTVEFLCDESGN-FYFIEVN 328


>gi|171463027|ref|YP_001797140.1| acetyl-CoA carboxylase, biotin carboxylase [Polynucleobacter
           necessarius subsp. necessarius STIR1]
 gi|171192565|gb|ACB43526.1| acetyl-CoA carboxylase, biotin carboxylase [Polynucleobacter
           necessarius subsp. necessarius STIR1]
          Length = 454

 Score = 71.7 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 36/222 (16%), Positives = 80/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      +E     +      +  L  DK+ +K+ +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAERVEKSGFAFIGPTAASIHLMGDKVSAKRAMIKAGVPCVPGSEG 136

Query: 114 -----NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
                 +  + +   +  P +IK   GG   G+ V+  +  +   +     ++       
Sbjct: 137 APPDNPKEIIAAAKKVGYPVIIKAAGGGGGRGMRVVHTEAHLINAVNMTREEAGRAFGNP 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
           ++ +E++++    +   V+ D   +   +            K          PA  I   
Sbjct: 197 EVYMEKFLEKPRHVEIQVLADTHGNAIWLGERDCSMQRRHQK-----VIEEAPAPGIDRR 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +  ++      A + IG RG    +FL+   + + F++E+N 
Sbjct: 252 LIAKIGERCAEACRKIGYRGAGTFEFLY--ENGEFFFIEMNT 291


>gi|15835717|ref|NP_300241.1| acetyl-CoA carboxylase biotin carboxylase subunit [Chlamydophila
           pneumoniae J138]
 gi|16752859|ref|NP_445129.1| acetyl-CoA carboxylase biotin carboxylase subunit [Chlamydophila
           pneumoniae AR39]
 gi|7189499|gb|AAF38404.1| acetyl-coenzyme A carboxylase, biotin carboxylase [Chlamydophila
           pneumoniae AR39]
 gi|8978555|dbj|BAA98392.1| biotin carboxylase [Chlamydophila pneumoniae J138]
          Length = 454

 Score = 71.7 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 84/220 (38%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---S 110
            +H  +G   E+    +I E   + +      + A+  DK+ +K +      PV P    
Sbjct: 76  AVHPGYGFLSENANFASICESCGLTFIGPSSESIAMMGDKIAAKSLAKKIKCPVIPGSEG 135

Query: 111 ILVNRFT-MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSWNHGDQ 165
           I+ +    +     I  P VIK + GG   GI ++K+             ++ +  +   
Sbjct: 136 IIEDESEGLKIAEKIGFPIVIKAVAGGGGRGIRIVKEKDEFYRAFSAARAEAEAGFNNPN 195

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE++++    L   V+GD   +   +            K             +  +I 
Sbjct: 196 VYIEKFIENPRHLEIQVIGDTHGNYVHLGERDCTIQRRRQK----LIEETPSPILNAEIR 251

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +V ++A    ++ G   +   +FL D   +K +++E+N 
Sbjct: 252 VKVGKIAVDLARSAGYFSVGTVEFLLDK-DKKFYFMEMNT 290


>gi|124266455|ref|YP_001020459.1| carbamoyl-phosphate synthase large subunit [Methylibium
           petroleiphilum PM1]
 gi|124259230|gb|ABM94224.1| carbamoyl-phosphate synthase large subunit [Methylibium
           petroleiphilum PM1]
          Length = 1090

 Score = 71.7 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/198 (14%), Positives = 77/198 (38%), Gaps = 8/198 (4%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ--HLISPPYV 129
           LE   +P   +   +  ++ D+ R +Q++   G+   P+          Q    I  P V
Sbjct: 661 LERAGVPIVGTSPDSIDIAEDRERFQQLLHKLGLKQPPNRTARTEEAALQLAQEIGYPLV 720

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  D+ +   + ++   +    +L+++++ D +E+    + D    
Sbjct: 721 VRPSYVLGGRAMEIVHGDKDLERYMREAVRVSEKSPVLLDRFLDDAVEVDVDCISDGHDV 780

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           +    +   +       +S  ++  + P  +   +  E++R      +A+   G+    F
Sbjct: 781 MIGAIMEHIEQAGV---HSGDSACSLPPYALSPALQDELRRQTAAMAKALQVVGLMNVQF 837

Query: 249 LFDPLSRK--VFWLEINV 264
                  +  V+ LE+N 
Sbjct: 838 AIQGEGDEAVVYVLEVNP 855



 Score = 53.6 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 43/291 (14%), Positives = 94/291 (32%), Gaps = 48/291 (16%)

Query: 18  SGKACASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLA-------------- 54
           SG     AL + G++V  +         D + +    +  +   +               
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPITWSVVEKIIAKERQTHPDE 88

Query: 55  ----FNVLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP 106
                  + G    +  +      +L    +    +   A   + D+++ K  ++  G+ 
Sbjct: 89  KMAILPTMGGQTALNCALDLHKHGVLSKYGVEMIGANEHAIEKAEDRLKFKDAMTGIGLH 148

Query: 107 VCPS---------ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
              S         + V R           P VI+P       G  +    +       + 
Sbjct: 149 SAKSGIAHSMEEALAVQRRITSDIGGTGFPMVIRPSFTLGGTGGGIAYNPEEFEEICKRG 208

Query: 158 SSWNHGDQLLIEQYVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVL 215
              +   +LLIE+ + G  E    V+ D + + +   ++   D           +S  V 
Sbjct: 209 LDLSPTKELLIEESLIGWKEYEMEVVRDKADNCIIVCSIENLDPMGIHT----GDSITVA 264

Query: 216 PAK-IPLDIYKEVQRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
           PA+ +    Y+ ++  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 PAQTLTDKEYQLLRNASIAILREIGVDTGGSNVQFSINPDNGRMVVIEMNP 315


>gi|299148114|ref|ZP_07041177.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Bacteroides sp.
           3_1_23]
 gi|298514297|gb|EFI38183.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Bacteroides sp.
           3_1_23]
          Length = 511

 Score = 71.7 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 82/220 (37%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       +   I +            DK+ ++  +   GVPV P    
Sbjct: 84  AIHPGYGFLSENATFARRCQEEGIIFIGPNPETMEAMGDKIAARIKMIEAGVPVVPGTQD 143

Query: 114 NRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
           N  +++      + I  P ++K   GG   G+ +I   + +      + S +      D 
Sbjct: 144 NLKSVEEAIELCNKIGYPVMLKASMGGGGKGMRLIHSAEEVEEAYTTAKSESLSSFGDDT 203

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E++V+    +   ++GD   +V  +   +        K             +  ++ 
Sbjct: 204 VYLEKFVEEPHHIEFQILGDKHGNVIHLCERECSVQRRNQKI----VEETPSVFVTPELR 259

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K++   A  A +A+   G    +FL D   R  ++LE+N 
Sbjct: 260 KDMGEKAVAAAKAVNYIGAGTIEFLVDKH-RNYYFLEMNT 298


>gi|326790915|ref|YP_004308736.1| carbamoyl-phosphate synthase, large subunit [Clostridium
           lentocellum DSM 5427]
 gi|326541679|gb|ADZ83538.1| carbamoyl-phosphate synthase, large subunit [Clostridium
           lentocellum DSM 5427]
          Length = 1081

 Score = 71.7 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 24/204 (11%), Positives = 74/204 (36%), Gaps = 15/204 (7%)

Query: 67  LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQHLI 124
            +    E + IP   +       + D+ +  +++    +       +      +     +
Sbjct: 644 KLAKFCEKMNIPVLGTHPKHMDEAEDREKFDEILEKLHIKRPKGKAIWSVEEGLKVAEEL 703

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
             P +++P       G+ +  +   +   L+ +   +  + +LI++Y+ G E+    + D
Sbjct: 704 EYPVLVRPSYVLGGQGMEITYEAHQLERYLINAFDRDPENPVLIDRYLMGREIEVDALSD 763

Query: 185 AS---LDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGC 240
                +      + ++  +S        +ST + P   IP  I +++     +  + +  
Sbjct: 764 GENILIPGIMEHLERAGIHS-------GDSTTLYPSVNIPDHIKEKIITCTQMLAKELKV 816

Query: 241 RGISRSDFLFDPLSRKVFWLEINV 264
            G+    ++       ++ +E+N 
Sbjct: 817 LGMINIQYI--EYKNDLYIIEVNP 838



 Score = 57.1 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 52/287 (18%), Positives = 99/287 (34%), Gaps = 35/287 (12%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQIDVD---------------------RSVGLV 45
           G ++E + S   G     A+ + G +V  ++ +                       +  V
Sbjct: 21  GQAAEFDYS---GTQACQAIREEGIEVVLVNSNPATIMTDEEIADKIYIEPLTVEFLEKV 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +A  +PD     + G    +  V+     ILE   +    + I A     D+   + ++ 
Sbjct: 78  IAKERPDSVLAGVGGQTALNLAVELNDKGILEKYNVRVIGTQISAIKEGEDRELFRALMK 137

Query: 102 SCGVPVCPSILVNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
               P   S +V            I  P V++P       G  + + ++ +         
Sbjct: 138 RINQPCIESEIVETVEAAVAFSRKIGYPVVVRPAYTLGGTGGGIAETEEELREICASGLH 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   Q+LIE+ + G  E+   VM D     T I V   +     +   + +S  V P++
Sbjct: 198 LSRVHQVLIEKCIKGWKEIEYEVMRDNYG--TAITVCNMENID-PVGIHTGDSIVVAPSQ 254

Query: 219 -IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +    Y+ ++R +     A   RG         P S +   +EIN 
Sbjct: 255 TLSDREYQMLRRASLDIISACDIRGGCNVQLALHPDSFEYAVIEINP 301


>gi|255281292|ref|ZP_05345847.1| carbamoyl-phosphate synthase, large subunit [Bryantella
           formatexigens DSM 14469]
 gi|255268249|gb|EET61454.1| carbamoyl-phosphate synthase, large subunit [Bryantella
           formatexigens DSM 14469]
          Length = 1075

 Score = 71.7 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 45/278 (16%), Positives = 99/278 (35%), Gaps = 36/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL+  G+++  +              DV          +  ++   +PD    
Sbjct: 29  SGTQACKALKKLGYEIVLVNSNPATIMTDPETADVTYIEPLNVERLEQIIQKERPDALLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G  G +   +     IL+   +      + A     D++  K+ +++ G+ +  S +
Sbjct: 89  NLGGQSGLNLCAELYKAGILDKYGVKVIGVQVDAIERGEDRIEFKKAMNALGIEMARSEV 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     +  P V++P       G  ++   + +     +    +   Q+L+E+
Sbjct: 149 AYSVEEALAIADNLGYPVVLRPAYTMGGAGGGLVYNREELKTVCARGLQASLVGQVLVEE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK---IPLDIYKE 226
            + G  EL   V+ DA  ++  +   ++                   A    I  +  K 
Sbjct: 209 SIIGWEELELEVVRDADNNMITVCFIENI-----DPMGVHTGDSFCSAPMLTISEECQKR 263

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +Q  A+   +++   G +   F  DP+S ++  +EIN 
Sbjct: 264 LQEQAYKIVESVQVIGGTNVQFAHDPVSDRIIVIEINP 301



 Score = 58.2 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/196 (13%), Positives = 74/196 (37%), Gaps = 8/196 (4%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-ILVN-RFTMDSQHLISPPYV 129
           LE   +    +      L+ D+ + ++++    +P+  S + VN    +     I  P +
Sbjct: 647 LEKNGVKILGTSPSVIDLAEDRDQFREMMEKLEIPMPESGMAVNVEEALSIAKQIGYPVM 706

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLD 188
           ++P       G+ V+  D+S+   +  +        +LI+++++   E     + D +  
Sbjct: 707 VRPSYVLGGRGMEVVYDDESMTEYMKAAVGVTPDRPILIDRFLNHATECEADAISDGTHA 766

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                +   +       +S  ++  +    I  +  + ++       + +  +G+   + 
Sbjct: 767 FVPAVMEHIELAGV---HSGDSACIIPSVHISAENVETIKEYTRKIAEEMHVKGL--MNM 821

Query: 249 LFDPLSRKVFWLEINV 264
            +     KV+ LE N 
Sbjct: 822 QYAIEKGKVYVLEANP 837


>gi|153207476|ref|ZP_01946176.1| carbamoyl-phosphate synthase, large subunit [Coxiella burnetii 'MSU
           Goat Q177']
 gi|165918965|ref|ZP_02219051.1| carbamoyl-phosphate synthase, large subunit [Coxiella burnetii RSA
           334]
 gi|212218697|ref|YP_002305484.1| carbamoyl-phosphate synthase large chain [Coxiella burnetii
           CbuK_Q154]
 gi|120576607|gb|EAX33231.1| carbamoyl-phosphate synthase, large subunit [Coxiella burnetii 'MSU
           Goat Q177']
 gi|165917362|gb|EDR35966.1| carbamoyl-phosphate synthase, large subunit [Coxiella burnetii RSA
           334]
 gi|212012959|gb|ACJ20339.1| carbamoyl-phosphate synthase large chain [Coxiella burnetii
           CbuK_Q154]
          Length = 1073

 Score = 71.7 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 46/278 (16%), Positives = 97/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D D              +  ++   KPD    
Sbjct: 29  SGTQACRALREEGYRVILVNSNPATIMTDPDLADATYIEPVHWEVIAKIIEKEKPDALLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G  G +  +    + ILE   +    +   A   + D+   ++ +   G+    S L
Sbjct: 89  TMGGQTGLNCALDLVREGILEKYGVELIGASREAIDKAEDRSLFQKAMLKIGLQTPRSGL 148

Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +      +    +  P +I+P       G  +    +       +    +   ++LI++
Sbjct: 149 AHSMEDAWKILEQVGFPAIIRPSFTLGGSGGGIAYNREEFLAICTRGLELSPTTEILIDE 208

Query: 171 YVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + + +   ++   D           +S  V PA+ +    Y+ +
Sbjct: 209 SIAGWKEFELEVVRDKNDNCIIVCSIENFDPMGIHT----GDSITVAPAQTLTDKEYQRM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  A    + IG   G S   F  +P   ++  +E+N 
Sbjct: 265 RDAAIAILREIGVETGGSNVQFGINPDDGRMIVIEMNP 302



 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 39/232 (16%), Positives = 85/232 (36%), Gaps = 26/232 (11%)

Query: 67  LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQHLI 124
            + + L    +P   +   A   + D+ R + ++   G+   P+  V      +    + 
Sbjct: 654 KLASALAKAGVPIVGTTPDAIDRAEDRERFQALIQGVGLRQPPNGTVRSVEEGLRLAKVF 713

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL--------IEQYVDGIE 176
           + P +++P        + VI  ++ +   + +    + G+ LL        IE  VD I 
Sbjct: 714 AYPLIVRPSYVLGGRAMKVIYSEKELTRYMTKDVIVSEGEPLLLDRFLDDAIEVDVDAIC 773

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
               V+    L+  E A   S            +S    P  +  +I ++++    L  +
Sbjct: 774 DGENVLIGGILEHIEQAGVHSG----------DSSCAFPPHSLSPEIQEQLREQVRLIAK 823

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
            +G  G+  + F       +++ LE+N +   T     P +A   G    ++
Sbjct: 824 ELGVVGLINTQFAI--QENEIYVLEVNPRASRT----VPFLAKATGMPLAKI 869


>gi|118084650|ref|XP_416970.2| PREDICTED: similar to Propionyl-Coenzyme A carboxylase, alpha
           polypeptide [Gallus gallus]
          Length = 713

 Score = 71.7 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 73/221 (33%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      L    + +      A     DK+ SK +  +  V   P    
Sbjct: 123 AVHPGYGFLSENKEFARRLAAEGVTFIGPDTHAIQAMGDKIESKLLAKNAKVNTIPGFDG 182

Query: 112 LVNRFTMDS--QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGD 164
           +V            I  P +IK   GG   G+ +   D+             +SS+   D
Sbjct: 183 VVKDADEAVRIAREIGYPVMIKASAGGGGKGMRIAWDDEETREGFRFSSQEAASSFG-DD 241

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           +LLIE+++D    +   V+ D   +   +   +        K             +  + 
Sbjct: 242 RLLIEKFIDNPRHIEIQVLADKHGNALWLNERECSIQRRNQK----VVEEAPSTFLDPET 297

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +   A    +A+        +FL D      ++LE+N 
Sbjct: 298 RRAMGEQAVALAKAVKYSSAGTVEFLVDSSKN-FYFLEMNT 337


>gi|319789203|ref|YP_004150836.1| acetyl-CoA carboxylase, biotin carboxylase [Thermovibrio
           ammonificans HB-1]
 gi|317113705|gb|ADU96195.1| acetyl-CoA carboxylase, biotin carboxylase [Thermovibrio
           ammonificans HB-1]
          Length = 448

 Score = 71.7 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 37/219 (16%), Positives = 82/219 (37%), Gaps = 16/219 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+     I +   I +         L  DK ++++V    GVPV P   V
Sbjct: 77  AVHPGYGFLSENPGFAEICQACGIKFIGPSPETMLLMGDKAKAREVAKKAGVPVVPGSGV 136

Query: 114 NRFTMDS---QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQL 166
            +   ++      I  P ++K   GG   G+ +I+  +     +  + +         ++
Sbjct: 137 VKTVQEALREAERIGFPVLVKAAHGGGGRGMRLIESARDAETQIATAMAEAEAAFGSGEV 196

Query: 167 LIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
            +E++V+    +   V+ D+  +V  +   +        K             +  ++ +
Sbjct: 197 YVEKFVENPRHIEVQVIADSKGNVFTLFERECSLQRRHQK----VVEEAPSPFVTPELRR 252

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           E+ + A    + I   G    +FL D      +++E+N 
Sbjct: 253 ELSKAAASIARYINYEGAGTVEFLVDGKGN-FYFIEMNT 290


>gi|306843618|ref|ZP_07476219.1| biotin carboxylase [Brucella sp. BO1]
 gi|306276309|gb|EFM58009.1| biotin carboxylase [Brucella sp. BO1]
          Length = 655

 Score = 71.7 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 40/225 (17%), Positives = 74/225 (32%), Gaps = 22/225 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      +E   + +      A      K  +K ++   GVPV P    
Sbjct: 77  AIHPGYGFLSENPAFVDAVEEAGLIFIGPSAKAIRAMGLKDAAKALMEKAGVPVVPGYHG 136

Query: 114 NRFT----MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
           +             I+ P +IK   GG   G+  +         L     ++ +      
Sbjct: 137 DNQDGAFLKSEADRITYPVLIKARAGGGGKGMRRVDSAADFAAALESARREAEASFGDGA 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           +L+E+Y+     +   V GD   +               L+          PA  +  ++
Sbjct: 197 VLVEKYMAKPRHIEVQVFGDNHGNAV-----HLFERDCSLQRRHQKVIEEAPAPGMTEEM 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR----KVFWLEINV 264
              +   A  A  AIG  G    +F+ D        + F++E+N 
Sbjct: 252 RAAMGEAAVKAALAIGYSGAGTVEFIADVSEGLRPDRFFFMEMNT 296


>gi|301758106|ref|XP_002914903.1| PREDICTED: propionyl-CoA carboxylase alpha chain,
           mitochondrial-like, partial [Ailuropoda melanoleuca]
          Length = 704

 Score = 71.7 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 72/221 (32%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      L    + +      A     DK+ SK +     V   P    
Sbjct: 112 AVHPGYGFLSENKEFAKCLAAEGVIFIGPDTHAIQAMGDKIESKLLAKKAKVNTIPGFDG 171

Query: 112 LVNRFTMDS--QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGD 164
           +V            I  P +IK   GG   G+ +   D+             +SS+   D
Sbjct: 172 VVKDADEAVRIAREIGYPVMIKASAGGGGKGMRIAWDDEETRDGFRFSSQEAASSFG-DD 230

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           +LLIE+++D    +   V+GD   +   +   +        K             +    
Sbjct: 231 RLLIEKFIDNPRHIEIQVLGDKHGNAVWLNERECSIQRRNQK----VVEEAPSIFLDSKT 286

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +   A    +A+        +FL D      ++LE+N 
Sbjct: 287 RRAMGEQAVALAKAVKYSSAGTVEFLVDSKKN-FYFLEMNT 326


>gi|281411669|ref|YP_003345748.1| phosphoribosylaminoimidazole carboxylase, ATPase subunit
           [Thermotoga naphthophila RKU-10]
 gi|281372772|gb|ADA66334.1| phosphoribosylaminoimidazole carboxylase, ATPase subunit
           [Thermotoga naphthophila RKU-10]
          Length = 380

 Score = 71.7 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 40/202 (19%), Positives = 77/202 (38%), Gaps = 17/202 (8%)

Query: 68  VQAILELLEIPY-THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP 126
           VQ + +L +  Y  H       +  DK   K+ +   G+PV     V     D +     
Sbjct: 75  VQTLKKLYDEGYRIHPSPYTLEIIQDKFIQKEFLKKNGIPVPRYKPVKDLESDVRE-FGF 133

Query: 127 PYVIKPLKGG-SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGD 184
           P V K  KGG    G+ +IK ++ +   +          +  +E++V+   EL   V  +
Sbjct: 134 PVVQKARKGGYDGRGVFIIKNEKDLENAI--------KGETYLEEFVEIEKELAVMVARN 185

Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244
              +     V +  ++  +    ++  T + PA+I     K  + +A    +A+   GI 
Sbjct: 186 EKGETACYPVVEM-YFDEDA---NICDTVIAPARIEEKHSKIAREIATSVVEALEGVGIF 241

Query: 245 RSDFLFDPLSRKVFWLEINVQP 266
             +        ++   EI  +P
Sbjct: 242 GIEMFLTKQ-GEILVNEIAPRP 262


>gi|149190658|ref|ZP_01868926.1| acetyl-CoA carboxylase subunit A [Vibrio shilonii AK1]
 gi|148835541|gb|EDL52510.1| acetyl-CoA carboxylase subunit A [Vibrio shilonii AK1]
          Length = 447

 Score = 71.7 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 82/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         L  DK+ +   + + GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAEQVERSGFIFVGPKAETIRLMGDKVSAINSMKNAGVPCVPGSDG 136

Query: 112 -LVNRFTMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
            L +  T +  H   I  P +IK   GG   G+ V++ +  +   +     ++ +  + D
Sbjct: 137 PLDDDETKNKAHAKRIGYPVIIKASGGGGGRGMRVVRSEGELIEAIAMTRAEAKAAFNND 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E++++    +   V+ D       +            K          PA  I  +
Sbjct: 197 MVYMEKFLENPRHVEVQVIADGQGGAIHLGERDCSMQRRHQK-----VVEEAPAPGITEE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + K +      A   IG RG    +FL+   + + +++E+N 
Sbjct: 252 MRKYIGERCTRACIEIGYRGAGTFEFLY--ENGEFYFIEMNT 291


>gi|86605337|ref|YP_474100.1| phosphoribosylamine--glycine ligase [Synechococcus sp. JA-3-3Ab]
 gi|86553879|gb|ABC98837.1| phosphoribosylamine--glycine ligase [Synechococcus sp. JA-3-3Ab]
          Length = 431

 Score = 71.7 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 41/203 (20%), Positives = 76/203 (37%), Gaps = 13/203 (6%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL--ISPPYV 129
            +   +P       A+ L   K+ +KQ++   G+P  P++     +    HL   S P V
Sbjct: 84  FQAAGLPIFGPSRAAAQLEGSKLWAKQLMQEAGIPTAPAVGFADLSEALAHLNSRSYPVV 143

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           IK     +  G+ V +  +     L  + +   GDQ+LIE+++ G E++   + D  + V
Sbjct: 144 IKKDGLAAGKGVTVAQNREEAVQALEAALA-KPGDQVLIEEFIPGQEVSVLALTDGQICV 202

Query: 190 TEIAVPKSDFYSY-ELKYSSLNSTHVLPAK--IPLDIYKEVQRL----AFLAHQAIGCR- 241
                         +   ++       PA   +  +    +Q         A Q  G R 
Sbjct: 203 PLPPAQDYKRLGEGDTGPNTGGMGAHAPADHLVTPEGLARIQTQILDPTLEALQRRGIRY 262

Query: 242 -GISRSDFLFDPLSRKVFWLEIN 263
            G+  +  +  P     + LE N
Sbjct: 263 QGVIYAGLMITPS-GDPYVLEYN 284


>gi|255528292|ref|ZP_05395105.1| carbamoyl-phosphate synthase, large subunit [Clostridium
           carboxidivorans P7]
 gi|255508010|gb|EET84437.1| carbamoyl-phosphate synthase, large subunit [Clostridium
           carboxidivorans P7]
          Length = 1068

 Score = 71.7 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 30/216 (13%), Positives = 78/216 (36%), Gaps = 12/216 (5%)

Query: 67  LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV--PVCPSILVNRFTMDSQHLI 124
            +   L+   I    +      ++ D+ R  +++   G+  P    I      ++    +
Sbjct: 644 KLAKFLKEKNILTLGTTADQIDMAEDRERFDELLEKLGISRPKGKGIWNTEEGLEEAKKL 703

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
             P +++P       G+ +   ++ +   L  +   +  + +LI++Y+ G E+    + D
Sbjct: 704 GFPVLVRPSYVIGGQGMEITHDEKELIYYLSNAFEKDKKNPILIDKYLMGREIEVDAISD 763

Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244
               +    +   +       +S  + T      I  ++  ++          IG +G+ 
Sbjct: 764 GKDVLIPGIMEHLERAGV---HSGDSITMYPSQNISAEMKGKILDYTKKIALEIGIKGMI 820

Query: 245 RSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFP 275
              F+       ++ +E+N       P ++ VS  P
Sbjct: 821 NIQFI--EFEGNLYVIEVNPRASRTVPYISKVSKVP 854



 Score = 53.2 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 53/290 (18%), Positives = 105/290 (36%), Gaps = 41/290 (14%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQIDVD---------------------RSVGLV 45
           G ++E + S   G     AL + G +V  I+ +                       V  V
Sbjct: 21  GQAAEFDYS---GTQACEALREEGIEVVLINSNPATIMTDKETADKVYLEPLTLEFVEKV 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLV-------QAILELLEIPYTHSGILASALSMDKMRSKQ 98
           +   +PD   ++L G  G+ GL        + IL+   +    + I +     D+   + 
Sbjct: 78  IKEERPD---SLLAGMGGQTGLNLAVELYDKGILDKYNVKVIGTSIESIKEGEDRELFRN 134

Query: 99  VVSSCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
           +++  G PV  S ++      M     I  P +++P       G  + + ++ +   L  
Sbjct: 135 MMNRIGQPVIESEIITDMESGMAFASKIGYPVIVRPAYTLGGTGGGIAENEEELEEILES 194

Query: 157 SSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215
               +   Q+L+E+ V G  E+   VM D            +      +   + +S  V 
Sbjct: 195 GLQLSSIGQVLLEKSVKGWKEIEYEVMRD---SFGNCITVCNMENIDPVGIHTGDSIVVA 251

Query: 216 PAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           P++ +    Y+ ++  +     A+G  G        +P S +   +EIN 
Sbjct: 252 PSQTLSDKEYQMLRSASIDIINAVGIEGGCNVQLALNPHSFEYAVIEINP 301


>gi|171318513|ref|ZP_02907665.1| acetyl-CoA carboxylase, biotin carboxylase [Burkholderia ambifaria
           MEX-5]
 gi|171096299|gb|EDT41205.1| acetyl-CoA carboxylase, biotin carboxylase [Burkholderia ambifaria
           MEX-5]
          Length = 455

 Score = 71.7 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 80/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H  +G   E+      +E     +         +  DK+ +KQ +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAERVEQSGFTFIGPRPETIRMMGDKVTAKQTMIKTGVPCVPGSEG 136

Query: 113 ----VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
                 +  +     I  P +IK   GG   G+ V+  + ++   +     ++       
Sbjct: 137 ALPDDPKEIVKIARTIGYPVIIKAAGGGGGRGMRVVHTEAALVNAVNMTREEAGRAFGNP 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
           Q+ +E++++    +   V+ DA  +   +            K          PA  IP  
Sbjct: 197 QVYMEKFLENPRHIEIQVLSDAHKNAIWLGERDCSMQRRHQK-----VIEEAPAPGIPRR 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + + +      A + +G  G    +FL+   + + +++E+N 
Sbjct: 252 LIERIGDRCADACKKMGYLGAGTFEFLY--ENNEFYFIEMNT 291


>gi|158297962|ref|XP_001689096.1| AGAP004742-PA [Anopheles gambiae str. PEST]
 gi|157014579|gb|EDO63513.1| AGAP004742-PA [Anopheles gambiae str. PEST]
          Length = 1196

 Score = 71.7 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 30/205 (14%), Positives = 79/205 (38%), Gaps = 17/205 (8%)

Query: 69  QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLI 124
           QA+++   + +            DK+ +++     GVP+ P     +      ++     
Sbjct: 130 QAVID-AGLRFIGPSPKVVQQMGDKVAARKAAIEAGVPIVPGTDGPVTTKEEAVEFCRKH 188

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSWNHGDQLLIEQYVD-GIELTC 179
             P + K   GG   G+ V++K   +         ++ +      + IE++++    +  
Sbjct: 189 GLPVIFKAAYGGGGRGMRVVRKMDEVEDNFMRASSEAKAAFGNGAMFIEKFIERPRHIEV 248

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAI 238
            ++GD + +V  +           ++        + PA ++P+++  ++   A    + +
Sbjct: 249 QLLGDKAGNVVHLYE-----RDCSVQRRHQKVVEIAPAPRLPIEVRDKMTEYAVRLARHV 303

Query: 239 GCRGISRSDFLFDPLSRKVFWLEIN 263
           G       +FL D      +++E+N
Sbjct: 304 GYENAGTVEFLCDESGN-FYFIEVN 327


>gi|251779748|ref|ZP_04822668.1| carbamoyl-phosphate synthase, large subunit [Clostridium botulinum
           E1 str. 'BoNT E Beluga']
 gi|243084063|gb|EES49953.1| carbamoyl-phosphate synthase, large subunit [Clostridium botulinum
           E1 str. 'BoNT E Beluga']
          Length = 1069

 Score = 71.7 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/216 (13%), Positives = 79/216 (36%), Gaps = 12/216 (5%)

Query: 67  LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV--PVCPSILVNRFTMDSQHLI 124
            +   L+   I    +      ++ D+ +  +++    +  P    I      ++    +
Sbjct: 644 KLANFLKEKNIKTLGTTADQIDMAEDREKFDELLEKLDISRPKGKGIWSVEEGLEEARKL 703

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
             P +++P       G+ +   ++ +   L  + + +  + +LI++Y+ G E+    + D
Sbjct: 704 GFPVLVRPSYVIGGQGMEITHDEEELTFYLTNAFAKDKKNPILIDKYLMGREIEVDAISD 763

Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244
               +    +   +       +S  + T      +  +I  ++         AIG +G+ 
Sbjct: 764 GENILIPGIMEHLERAGV---HSGDSVTMYPSQNVCDEIKGKILEYTKKLALAIGIKGMI 820

Query: 245 RSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFP 275
              F+       ++ +E+N       P ++ VS  P
Sbjct: 821 NIQFI--EFEGNLYVIEVNPRASRTVPYISKVSGVP 854



 Score = 67.5 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 61/318 (19%), Positives = 117/318 (36%), Gaps = 45/318 (14%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQID-------VDRSVGL--------------V 45
           G ++E + S   G     AL+  G +V  I+        D+ V                V
Sbjct: 21  GQAAEFDYS---GTQACEALKSEGVEVILINSNPATIMTDKEVADKVYLEPLTLEFIEKV 77

Query: 46  LAHLKPDLAFNVLHGNFGEDG-------LVQAILELLEIPYTHSGILASALSMDKMRSKQ 98
           +A  KPD   ++L G  G+ G           IL+   +    + I +     D+   + 
Sbjct: 78  IAKEKPD---SLLAGMGGQTGLNLAVELHDAGILDKYNVKVIGTSIESIKEGEDRELFRD 134

Query: 99  VVSSCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
           +++  G PV  S +V      +D  + I  P +++P       G  +   ++ +   L  
Sbjct: 135 MMNRIGEPVIKSEIVTDLQAGIDFANKIGYPVIVRPAYTLGGSGGGIADDEEELRTILES 194

Query: 157 SSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215
               +   Q+L+E+ V G  E+   VM D            +      +   + +S  V 
Sbjct: 195 GLQLSTIGQVLLEKSVKGWKEIEYEVMRD---SYGNCITVCNMENIDPVGIHTGDSIVVA 251

Query: 216 PAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274
           P++ +    Y+ ++  +     A+G  G     F  +P + +   +EIN  P ++  S  
Sbjct: 252 PSQTLSDKEYQMLRTASINIINAVGIEGGCNVQFSLNPNTFEYAVIEIN--PRVSRSS-- 307

Query: 275 PEMAAYAGYSFRELLLWM 292
              +   GY   +L   +
Sbjct: 308 ALASKATGYPIAKLAAKI 325


>gi|150401430|ref|YP_001325196.1| pyruvate carboxylase subunit A [Methanococcus aeolicus Nankai-3]
 gi|150014133|gb|ABR56584.1| acetyl-CoA carboxylase, biotin carboxylase [Methanococcus aeolicus
           Nankai-3]
          Length = 509

 Score = 71.7 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 82/220 (37%), Gaps = 18/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+       E   I +      A      K+ +K+++ +  VPV P    
Sbjct: 77  AIHPGYGFLSENLEFAKACENNGIVFIGPPSEAIDAMGSKINAKKIMKNANVPVLPGREE 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
            I      ++    I  P +IK   GG  +G+ V    Q +   +      + S      
Sbjct: 137 PIEDPEEVVEIAEEIGYPVIIKASAGGGGMGMAVAYNKQELKEVVESTKSIAQSAFGDST 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+Y++    +   V+GD   +V  +   +        K             +  ++ 
Sbjct: 197 VFIEKYLENPRHIEIQVLGDKYGNVVHLGDRECSIQRRHQK----LIEEAPSPIMTEELR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K++   A  A +AI        +FL+D  + + ++LE+N 
Sbjct: 253 KKMGDAAISAAKAINYYSAGTVEFLYD--NGEFYFLEMNT 290


>gi|300823896|ref|ZP_07104019.1| biotin carboxylase [Escherichia coli MS 119-7]
 gi|300523528|gb|EFK44597.1| biotin carboxylase [Escherichia coli MS 119-7]
          Length = 447

 Score = 71.7 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 42/253 (16%), Positives = 87/253 (34%), Gaps = 27/253 (10%)

Query: 32  KVSQIDVDRSVGLVLAHLKP-DLAFN----VLHGNFG---EDGLV-QAILELLEIPYTHS 82
           +V  I   R+    L   K  D A       +H  +G   E+    +A+L+   + +   
Sbjct: 42  EVIVIGKSRADDSYLDGKKIIDAALQSGAQAIHPGYGFLSENASFARAVLD-AGLIFVGP 100

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPS-----ILVNRFTMDSQHLISPPYVIKPLKGGS 137
                    DK  ++      GVPV P      I        +  +   P +IK   GG 
Sbjct: 101 SPQIIEQMGDKAIARDCAIKAGVPVVPGSNGEVISPEEALSVASDITGYPLLIKASAGGG 160

Query: 138 SLGIIVIKKDQSIP-----LDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTE 191
             GI ++   + +            +++ H   + +E+Y+ +   +   ++GD    V  
Sbjct: 161 GKGIRIVHSPEQLVHEYTVARAEAKAAFGHDG-VYLERYIPEARHVEVQILGDGKNIVHL 219

Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
                    S + K     +       +   + + + + A    + +        ++L D
Sbjct: 220 FE----RECSLQRK-RQKVTEEAPSPSVSASLREALCQSALNLARMLNYSSAGTIEYLVD 274

Query: 252 PLSRKVFWLEINV 264
             S + F++E+N 
Sbjct: 275 DRSGEFFFIEMNT 287


>gi|121608461|ref|YP_996268.1| acetyl-CoA carboxylase, biotin carboxylase [Verminephrobacter
           eiseniae EF01-2]
 gi|121553101|gb|ABM57250.1| acetyl-CoA carboxylase, biotin carboxylase [Verminephrobacter
           eiseniae EF01-2]
          Length = 449

 Score = 71.7 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 37/226 (16%), Positives = 81/226 (35%), Gaps = 29/226 (12%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+      +E     +      +     DK+ +KQ +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAERVEKSGFQFIGPTPESIRSMGDKVSAKQAMIRAGVPCVPGSEG 136

Query: 111 ------ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSW 160
                 + V R        +  P +IK   GG   G+ V+  + ++   +     ++ + 
Sbjct: 137 ELPDDPVQVRR----IAKAVGYPVIIKAAGGGGGRGMRVVHTEAALVNAVQMTKAEAGAA 192

Query: 161 NHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK- 218
                + +E+++ +   +   V+ D   +   +            K          PA  
Sbjct: 193 FGNPAVYMEKFLQNPRHIEIQVLADKHRNAVYLGERDCSMQRRHQK-----VIEEAPAPG 247

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           I   + +++      A + IG RG    +FL+   + + +++E+N 
Sbjct: 248 IARKLIEKIGERCVAACKKIGYRGAGTFEFLY--ENEEFYFIEMNT 291


>gi|75908114|ref|YP_322410.1| carbamoyl phosphate synthase large subunit [Anabaena variabilis
           ATCC 29413]
 gi|75701839|gb|ABA21515.1| carbamoyl-phosphate synthase large subunit [Anabaena variabilis
           ATCC 29413]
          Length = 1097

 Score = 71.7 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 55/279 (19%), Positives = 105/279 (37%), Gaps = 36/279 (12%)

Query: 18  SGKACASALEDAGFKVSQID------------VDRS---------VGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++             DR+         V  V+A  +PD    
Sbjct: 29  SGTQACKALREEGYEVVLVNSNPATIMTDPETADRTYIEPLTPELVEKVIARERPDALLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  V      +L+   +    + + A   + D+    + +   GV VCPS  
Sbjct: 89  TMGGQTALNIAVALAKNGVLDQYNVELIGAKLPAIEKAEDRKLFNEAMDKIGVKVCPSGT 148

Query: 113 ---VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
              ++     ++ + + P +I+P       G  +    +            +   Q+LI+
Sbjct: 149 ASSLDEAKAIARRIGTYPLIIRPAFTMGGTGGGIAYNQEEFEEMAQVGIDASPVSQILID 208

Query: 170 QYVDG-IELTCGVMGDASLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPAK-IPLDIYKE 226
           Q + G  E    VM D + +V  I   ++ D           +S  V PA+ +    Y+ 
Sbjct: 209 QSLLGWKEYELEVMRDLADNVVIICSIENIDPMGIHT----GDSITVAPAQTLTDKEYQR 264

Query: 227 VQRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           ++ +A    + IG   G S   F  +P++  V  +E+N 
Sbjct: 265 LRDMAIKIIREIGVETGGSNIQFAVNPVNGDVVVIEMNP 303



 Score = 54.7 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 33/215 (15%), Positives = 81/215 (37%), Gaps = 14/215 (6%)

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGSS 138
            +   +   + D+ R ++++    +   P+ +   +   +     I  P V++P      
Sbjct: 680 GTSPDSIDSAEDRERFEKILQQLNISQPPNGIARSYEDALIVAKRIGYPVVVRPSYVLGG 739

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKS 197
             + ++  D  +   +  +        +LI+++++  IE+    + D +  V    + + 
Sbjct: 740 RAMEIVYSDAELERYMTFAVQVEPEHPILIDKFLENAIEVDVDAIADHTGRVVIGGIME- 798

Query: 198 DFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR- 255
             +  +    S +S   LP   +P  +  +++       QA+   G+    F     S  
Sbjct: 799 --HIEQAGIHSGDSACSLPSISLPPAVLNQIRSWTVQLAQALSVVGLMNIQFAVVGASSY 856

Query: 256 --KVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
             +V+ LE N +   T     P ++   G S  +L
Sbjct: 857 SPQVYILEANPRASRT----VPFVSKATGISLAKL 887


>gi|288936968|ref|YP_003441027.1| acetyl-CoA carboxylase, biotin carboxylase [Klebsiella variicola
           At-22]
 gi|330005636|ref|ZP_08305314.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Klebsiella sp.
           MS 92-3]
 gi|288891677|gb|ADC59995.1| acetyl-CoA carboxylase, biotin carboxylase [Klebsiella variicola
           At-22]
 gi|328536202|gb|EGF62583.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Klebsiella sp.
           MS 92-3]
          Length = 448

 Score = 71.7 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 40/225 (17%), Positives = 83/225 (36%), Gaps = 27/225 (12%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      +E     +         L  DK+ + Q +   GVP  P    
Sbjct: 77  AIHPGYGFLAENADFAEQVERSGFVFIGPKAETIRLMGDKVSAIQAMKQAGVPCVPG--- 133

Query: 114 NRFTMDSQHL--------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWN 161
           +   +D  H         I  P ++K   GG   G+ V+++++ +   +     ++ +  
Sbjct: 134 SDGPLDDNHEKNRRLAAGIGYPIIVKASGGGGGRGMRVVREEKELAQAIDMTRAEAKAAF 193

Query: 162 HGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-I 219
           + D + +E+Y++    +   ++ D       +A           K          PA  I
Sbjct: 194 NNDMVYMEKYLENPRHIEIQILADGQGQAIYLAERDCSMQRRHQK-----VVEEAPAPGI 248

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +I + +      A   IG RG    +FL+     + +++E+N 
Sbjct: 249 TAEIRQAIGERCAKACLDIGYRGAGTFEFLY--QQGEFYFIEMNT 291


>gi|300023326|ref|YP_003755937.1| carbamoyl-phosphate synthase, large subunit [Hyphomicrobium
           denitrificans ATCC 51888]
 gi|299525147|gb|ADJ23616.1| carbamoyl-phosphate synthase, large subunit [Hyphomicrobium
           denitrificans ATCC 51888]
          Length = 1091

 Score = 71.7 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 48/278 (17%), Positives = 98/278 (35%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+++  +         D D              V  ++A  KPD    
Sbjct: 29  SGTQACKALREEGYRIILVNSNPATIMTDPDLADATYIEPITPEVVAKIIAKEKPDAILP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +    Q IL+   +    +   A   + D+   ++ + + G+    S L
Sbjct: 89  TMGGQTALNTALALHQQGILQRHGVELIGANAAAIDKAEDRQLFREAMKTIGLETPRSKL 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +      D+   +  P +I+P       G  +    +       +    +   Q+L+E+
Sbjct: 149 AHTREEAADALEHVGLPAIIRPSFTLGGTGGGIAYNREEFFEIAERGLDASPTTQILVEE 208

Query: 171 YVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEV 227
            V G  E    V+ D + + +   ++   D           +S  V PA  +    Y+ +
Sbjct: 209 SVLGWKEFEMEVVRDKADNCIIICSIENVDPMGVHT----GDSITVAPALTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P   ++  +E+N 
Sbjct: 265 RDASIAVLREIGVETGGSNVQFAVNPADGRLVVIEMNP 302



 Score = 56.3 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 38/238 (15%), Positives = 81/238 (34%), Gaps = 21/238 (8%)

Query: 67  LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--FTMDSQHLI 124
            + + LE   +P   +   A  L+ D+ R K ++    +    S +             I
Sbjct: 659 KLASALEEAGVPILGTSPDAIDLAEDRDRFKALIEKLNLKQPKSGIAKTPGEARAVAETI 718

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-WNHGDQLLIEQY---------VDG 174
             P VI+P        + ++     +   + + S+  +   +L++ +           D 
Sbjct: 719 GYPVVIRPSYVLGGRAMEIVHDGSEVDRYVTRLSATLDRPSELVVSERRPLLIDSYLTDA 778

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
           +E+    + D         +   +       +S  ++  + P  +  DI  E++R A   
Sbjct: 779 VEVDVDCLSDGKDTFVAGIMEHIEEAGI---HSGDSACSLPPHSLSADIITELERQAREL 835

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
             A+   G+    F       +VF LE+N +   T     P +A   G     +   +
Sbjct: 836 ALALRVVGLMNIQFAI--KDGEVFILEVNPRASRT----VPFVAKVIGLPIASIASRI 887


>gi|290580681|ref|YP_003485073.1| carbamoylphosphate synthetase large subunit [Streptococcus mutans
           NN2025]
 gi|254997580|dbj|BAH88181.1| carbamoylphosphate synthetase large subunit [Streptococcus mutans
           NN2025]
          Length = 1059

 Score = 71.7 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 27/217 (12%), Positives = 72/217 (33%), Gaps = 20/217 (9%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYV 129
           L    +    + +     + D+   +Q +    +P  P            S   I  P +
Sbjct: 646 LSHAGVTILGTQVADLDRAEDRDLFEQALKDLNIPQPPGQTATNEEEAIVSARKIGFPVL 705

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS--- 186
           ++P        + +++ +  +   +  +   +    +L++ Y+ G E     + D     
Sbjct: 706 VRPSYVLGGRAMEIVENENDLRSYMRTAVKASPDHPVLVDSYLVGSECEVDAISDGKDVL 765

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISR 245
           +      + ++  +S        +S  V P + +  ++   +          + C G+  
Sbjct: 766 IPGIMEHIERAGVHS-------GDSMAVYPPQTLSKEVQATIADYTKRLAIGLNCIGMMN 818

Query: 246 SDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277
             F+       V+ +E+N       P ++ V+  P  
Sbjct: 819 IQFVI--KDETVYVIEVNPRASRTVPFLSKVTDIPMA 853



 Score = 70.5 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 49/296 (16%), Positives = 107/296 (36%), Gaps = 34/296 (11%)

Query: 25  ALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNVLHGNFG 63
           AL++ G+ V  ++        D+ +                +L   +PD     L G  G
Sbjct: 36  ALKEEGYSVVLVNSNPATIMTDKEIADKVYIEPITIEFVTRILRKERPDAILPTLGGQTG 95

Query: 64  EDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFT 117
            +  ++     IL+ L +    + + A   + D+   KQ++     P+  S +VN     
Sbjct: 96  LNMAMELSRAGILDELGVELLGTKLSAIDQAEDRDLFKQLMEDLEQPIPESDIVNSVDEA 155

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IE 176
           +     I  P +++P       G  +   ++ +          +   Q LIE+ + G  E
Sbjct: 156 VAFAAKIGYPVIVRPAFTLGGTGGGMCADEKELREIAENGLKLSPVTQCLIERSIAGFKE 215

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +   VM D++ +   + V   + +     ++  +        +     + ++  +    +
Sbjct: 216 IEYEVMRDSADNA--LVVCNMENFDPVGIHTGDSIVFAPTQTLSDIENQMLRDASLKIIR 273

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           A+   G        DP S K + +E+N  P ++  S     +   GY   +L   +
Sbjct: 274 ALKIEGGCNVQLALDPHSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAKI 325


>gi|255283885|ref|ZP_05348440.1| carbamoyl-phosphate synthase, large subunit [Bryantella
           formatexigens DSM 14469]
 gi|255265606|gb|EET58811.1| carbamoyl-phosphate synthase, large subunit [Bryantella
           formatexigens DSM 14469]
          Length = 1065

 Score = 71.7 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 38/228 (16%), Positives = 85/228 (37%), Gaps = 13/228 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTMDSQHLISPPYV 129
           L  + +P   +       + D+     ++  CG+P      V        + + +  P +
Sbjct: 647 LMKMGVPILGTSAENVDAAEDRELFDGILEKCGIPRPAGHTVFTAEEAKKAANELGYPVL 706

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           ++P       G+ +   D+ +   +   +       +L+++Y+ G E+      DA  D 
Sbjct: 707 VRPSYVLGGQGMQIAISDEDVDEFIGIINRIAQEHPILVDKYLVGKEIEV----DAVCDG 762

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           T+I +P    +       S +S  V PA+ I   +   ++       Q++   G+    F
Sbjct: 763 TDILIPGIMEHIERAGIHSGDSISVYPAQSIDAKVKATIEDYTRKLAQSLHVIGLINIQF 822

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +      +V+ +E+N +   T     P ++   G     L   ++  A
Sbjct: 823 IV--CGEEVYVIEVNPRSSRT----VPYISKVTGIPIVPLATKVILGA 864



 Score = 57.1 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 43/286 (15%), Positives = 97/286 (33%), Gaps = 33/286 (11%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQID-------VDRSVG--------------LV 45
           G ++E + +   G     +L++ G +V  ++        D+ +                +
Sbjct: 21  GQAAEFDYA---GTQACRSLKEEGIEVVLLNSNPATIMTDKDIADRVYIEPLTVEVVEQL 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   KPD     L G  G +  +    +  L+   +    +       + D+   K  + 
Sbjct: 78  ILKEKPDSVLPTLGGQAGLNLAMELEERGFLKENNVRLIGTTAETIKKAEDRQEFKNTME 137

Query: 102 SCGVPVCPSILVNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G P+  S +V          + I  P V++P       G  +    + +   L     
Sbjct: 138 KIGEPIAASKVVETIEEGVAFTNTIGYPVVLRPAYTLGGSGGGIAHNYEELTEILANGLR 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   Q+L+E+ + G  E+   VM D++ +   I V   +       ++  +        
Sbjct: 198 LSRVGQVLVERCIAGWKEIEYEVMRDSAGN--CITVCNMENIDPVGVHTGDSIVVAPSQT 255

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +    Y+ ++  A      +   G     +  +P S +   +E+N 
Sbjct: 256 LGDKEYQMLRTSALNIISELNITGGCNVQYALNPDSFEYCVIEVNP 301


>gi|157150233|ref|YP_001450393.1| carbamoyl phosphate synthase large subunit [Streptococcus gordonii
           str. Challis substr. CH1]
 gi|189081836|sp|A8AX83|CARB_STRGC RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|157075027|gb|ABV09710.1| carbamoyl-phosphate synthase, large subunit [Streptococcus gordonii
           str. Challis substr. CH1]
          Length = 1059

 Score = 71.7 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 23/224 (10%), Positives = 73/224 (32%), Gaps = 11/224 (4%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQHLISPPYV 129
           L    +    + +     + D+   +Q +    +P  P          +++   I  P +
Sbjct: 646 LSKAGVKILGTQVADLDRAEDRDLFEQALKELDIPQPPGQTATNEEEAIEAARKIGFPVL 705

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           ++P        + +++ +  +   +  +   +    +L++ Y+ G E     + D    +
Sbjct: 706 VRPSYVLGGRAMEIVENEADLRSYMRTAVKASPDHPVLVDSYIVGDECEVDAISDGRQVL 765

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
               +   +       +S  +     P  +   +   +          + C G+    F+
Sbjct: 766 IPGIMEHIERAGV---HSGDSMAAYPPQTLSQKVKDTIADYTKRLALGLNCIGMMNIQFV 822

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
                 +V+ +E+N +   T     P ++        ++   ++
Sbjct: 823 I--KDEQVYVIEVNPRASRT----VPFLSKVTDIPMAQVATRLI 860



 Score = 63.6 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 37/206 (17%), Positives = 77/206 (37%), Gaps = 9/206 (4%)

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147
           + D+   KQ++   G P+  S +VN     ++    I  P +++P       G  +   +
Sbjct: 126 AEDRDLFKQLMEELGQPIPESEIVNTVDEALEFAAGIGYPVIVRPAFTLGGTGGGICSNE 185

Query: 148 QSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
             +          +   Q LIE+ + G  E+   VM D + +   + V   + +     +
Sbjct: 186 GELQEIAENGLKISPVTQCLIERSIAGFKEIEYEVMRDGADNA--LVVCNMENFDPVGIH 243

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
           +  +        I    Y+ ++  +    +A+   G        DP S K + +E+N  P
Sbjct: 244 TGDSIVFAPSQTISDYEYQMLRDASLKIIRALKIEGGCNVQLALDPNSFKYYVIEVN--P 301

Query: 267 GMTPVSIFPEMAAYAGYSFRELLLWM 292
            ++  S     +   GY   +L   +
Sbjct: 302 RVSRSS--ALASKATGYPIAKLAAKI 325


>gi|294011688|ref|YP_003545148.1| propionyl-CoA carboxylase alpha chain [Sphingobium japonicum UT26S]
 gi|292675018|dbj|BAI96536.1| propionyl-CoA carboxylase alpha chain [Sphingobium japonicum UT26S]
          Length = 661

 Score = 71.7 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 34/223 (15%), Positives = 78/223 (34%), Gaps = 19/223 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H  +G   E    +  L+   I +      A A   DK+ SK++    GV V P  + 
Sbjct: 78  AVHPGYGFLSERESFRKALDEAGIVFIGPPANAIAAMGDKIESKKLAKEAGVNVVPGYVG 137

Query: 113 ---VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
                   +   + I  P ++K   GG   G+ +   +Q +      +          D+
Sbjct: 138 VIEDTEHAVRISNEIGYPVMMKASAGGGGKGMRLAYSEQDVREGFEATKREGLNSFGDDR 197

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE++++    +   ++GD   ++  +   +        K             +  ++ 
Sbjct: 198 VFIEKFIESPRHIEIQILGDQHGNILYLNERECSIQRRHQK----VVEEAPSPFVSPEMR 253

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLF---DPLSRKVFWLEINV 264
           +++        +A+G       + +    D      ++LE+N 
Sbjct: 254 RKMGEQCVALARAVGYFSAGTVELIVSGADKTGDGFYFLEMNT 296


>gi|260914713|ref|ZP_05921178.1| carbamoyl-phosphate synthase [Pasteurella dagmatis ATCC 43325]
 gi|260631217|gb|EEX49403.1| carbamoyl-phosphate synthase [Pasteurella dagmatis ATCC 43325]
          Length = 1071

 Score = 71.7 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 51/278 (18%), Positives = 100/278 (35%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +              DV        R+V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYKVVLVNSNPATIMTDPNMADVTYIEPIEWRTVEKIIEKERPDAILP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      +L+   +    +   A   + D+ R K+ +   G+    S +
Sbjct: 89  TMGGQTALNCALDLSKNGVLKKYNVELIGATEDAIDKAEDRGRFKEAMEKIGLSTPKSFV 148

Query: 113 VNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            + F     +Q  +  P +I+P       G  +            +    +   +LLIEQ
Sbjct: 149 CHTFDEAWAAQAEVGFPTLIRPSFTMGGSGGGIAYNKDEFYAICERGFDASPTHELLIEQ 208

Query: 171 YVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            V G  E    V+ D + + +   ++   D           +S  V PA+ +    Y+ +
Sbjct: 209 SVLGWKEYEMEVVRDKADNCIIVCSIENFDPMGVHT----GDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RNASLAVLREIGVDTGGSNVQFAINPQNGEMIVIEMNP 302



 Score = 62.8 bits (152), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 38/263 (14%), Positives = 94/263 (35%), Gaps = 29/263 (11%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH-----GNFGEDGLVQA 70
           AL ++GF+   +         D D S  L    L  +    ++H     G     G  Q 
Sbjct: 582 ALRESGFETIMVNCNPETVSTDFDTSDRLYFEPLTLEDVLEIIHVEKPYGVIVHYGG-QT 640

Query: 71  ILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--QH 122
            L+L        +    +   +   + D+ R +Q++    +    +              
Sbjct: 641 PLKLANDLYANGVNIIGTSADSIDAAEDRERFQQILHKLNLKQPTNRTARNAEEAVKLAE 700

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGV 181
            +  P V++P        + ++   + +   + ++ S ++   +L++ ++ + IE+    
Sbjct: 701 EVGYPLVVRPSYVLGGRAMQIVYNVEELKRYMREAVSVSNDSPILLDHFLNNAIEVDVDC 760

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241
           + D    V    +   +       +S  ++  + P  +  ++  E++R       A+G +
Sbjct: 761 ICDGEDVVIGGIMQHIEQAGI---HSGDSACSLPPYSLSQEVQDEIRRQTADMAFALGVK 817

Query: 242 GISRSDFLFDPLSRKVFWLEINV 264
           G+    F        ++ LE+N 
Sbjct: 818 GLMNVQFAV--QDGVIYVLEVNP 838


>gi|262042813|ref|ZP_06015966.1| acetyl-CoA carboxylase [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259039880|gb|EEW40998.1| acetyl-CoA carboxylase [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 449

 Score = 71.7 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 42/222 (18%), Positives = 82/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         L  DK+ +   +   GVP  P    
Sbjct: 77  AIHPGYGFLSENANFAEQVERSGFIFIGPKADTIRLMGDKVSAITAMKKAGVPTVPGSDG 136

Query: 112 -LVNRFTMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
            L +    +  H   I  P +IK   GG   G+ V++ D  +   +     ++ +  + D
Sbjct: 137 PLGDDMDANRAHAKRIGYPVIIKASGGGGGRGMRVVRSDAELAQSISMTKAEAKAAFNND 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+Y++    +   V+ D   +   +A           K          PA  I  +
Sbjct: 197 MVYMEKYLENPRHIEIQVLADGQGNAIYLAERDCSMQRRHQK-----VVEEAPAPGITPE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + + +      A   IG RG    +FLF   + + +++E+N 
Sbjct: 252 LRRYIGERCAKACVDIGYRGAGTFEFLF--ENGEFYFIEMNT 291


>gi|229918518|ref|YP_002887164.1| pyruvate carboxylase [Exiguobacterium sp. AT1b]
 gi|229469947|gb|ACQ71719.1| pyruvate carboxylase [Exiguobacterium sp. AT1b]
          Length = 1144

 Score = 71.7 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 48/280 (17%), Positives = 90/280 (32%), Gaps = 32/280 (11%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---DRSVGLVLAHLKPDLAFNV 57
           +AV     S E   SL   KA  + L   G     ID       V  +      D     
Sbjct: 31  VAV----YSQEDSGSLHRFKADEAYL--IGVDKKPIDAYLDIEDVIRIAKESGSD----A 80

Query: 58  LHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS---- 110
           +H  +G   E+  +        I +            DK+R++Q   + G+PV P     
Sbjct: 81  IHPGYGFLSENIELARRCREEGIIFVGPHESHLHAFGDKVRARQSAIAAGLPVIPGSDGP 140

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS----IPLDLLQSSSWNHGDQL 166
           +          +    P ++K   GG   G+ VI+ +      I     ++      D++
Sbjct: 141 LTSYEDAEAFANEHGFPLMVKASMGGGGRGMRVIRTEAEMKDLIERAKSEAKQAFGSDEV 200

Query: 167 LIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIY 224
            IE+ V+    +   ++GD    +              ++        V P   +     
Sbjct: 201 YIEKLVERPKHIEVQILGDEHGHII-----HLFERDCSVQRRHQKVVEVAPCVTLSDASR 255

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +   A    + +G       +FL        +++E+N 
Sbjct: 256 QAICDAAVQLMRHVGYVNAGTVEFLVTE-DESFYFIEVNP 294


>gi|330829887|ref|YP_004392839.1| methylcrotonoyl-CoA carboxylase alpha chain [Aeromonas veronii
           B565]
 gi|328805023|gb|AEB50222.1| Methylcrotonoyl-CoA carboxylase alpha chain [Aeromonas veronii
           B565]
          Length = 656

 Score = 71.7 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 48/244 (19%), Positives = 90/244 (36%), Gaps = 25/244 (10%)

Query: 34  SQIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALS 90
           S +D  + + +     + D     +H  +G   E+       E   + +      A    
Sbjct: 64  SYLDTGKVLKIA-KEARAD----AIHPGYGFLSENSDFATACEQRGLRFVGPSGAAILAM 118

Query: 91  MDKMRSKQVVSSCGVPVCPSIL----VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            DK  +K ++ + GVPV P          F  D    I  P +IK   GG   G+  + +
Sbjct: 119 GDKSGAKALMQAAGVPVLPGYHGTDQRPDFLRDQASQIGFPLLIKAASGGGGKGMRRVDQ 178

Query: 147 ----DQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYS 201
               D+S+     ++ +    D +L+E+Y+     +   V  D+  +   +         
Sbjct: 179 LADFDESLAAVKREAKAAFGDDLVLLERYLTQARHVEVQVFADSLGNAIYL-----GDRD 233

Query: 202 YELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260
             L+          PA  IP  + + +   A  A +AI  +G    +FL      + F++
Sbjct: 234 CSLQRRHQKVIEEAPAPDIPPALRRAMGDAAVAAAKAIHYQGAGTIEFLLCK--DEFFFM 291

Query: 261 EINV 264
           E+N 
Sbjct: 292 EMNT 295


>gi|330816547|ref|YP_004360252.1| argininosuccinate lyase [Burkholderia gladioli BSR3]
 gi|327368940|gb|AEA60296.1| argininosuccinate lyase [Burkholderia gladioli BSR3]
          Length = 894

 Score = 71.7 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 49/232 (21%), Positives = 88/232 (37%), Gaps = 33/232 (14%)

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYVIKPLKGGS 137
             +   A     DK R    +   GV    + +V   +   D    +S P V+KP  G  
Sbjct: 94  AGASPEAIRTCRDKARLAACLQRAGVGAAHTEVVPDLSALRDLALGLSYPRVLKPSFGSG 153

Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQ-------LLIEQYVDGIELTCGVMGDAS---- 186
           S+G+ +++ +  +     Q  +    ++       LL++ +V+G E +  V+G  +    
Sbjct: 154 SVGVRLVRSEAELLEHGAQILAARSNERGLAVVPQLLVQAFVEGAEFSVEVVGLGAGRGY 213

Query: 187 --LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR-GI 243
             L VT   + +  F+        + S H  PA IP      +      A  A G R G 
Sbjct: 214 RVLGVTGKHLGELPFF--------VESGHDFPAPIPAAQRDALVAETLRALDATGHRFGP 265

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYA-GYSFRELLLWMVE 294
           +  +        +V  +EIN +       + P+    A G    ++L  MV+
Sbjct: 266 AHVECRI--AEGRVVIIEINPR---LAGGMIPQAIEAATGI---DVLGAMVD 309


>gi|315645233|ref|ZP_07898358.1| phosphoribosylaminoimidazole carboxylase, ATPase subunit
           [Paenibacillus vortex V453]
 gi|315279275|gb|EFU42581.1| phosphoribosylaminoimidazole carboxylase, ATPase subunit
           [Paenibacillus vortex V453]
          Length = 395

 Score = 71.7 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 40/207 (19%), Positives = 82/207 (39%), Gaps = 17/207 (8%)

Query: 65  DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQH 122
           D  V  +LE  E  Y   G      +  ++R K  + + GVPV P   +   T    +  
Sbjct: 91  DAGVAKLLE--EQSYVPQGSKLLYTTQHRLREKAAIEAAGVPVAPYREITSLTDLQSAAT 148

Query: 123 LISPPYVIKPLKGG-SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
            +  P V+K   GG    G  V++ +  +     + ++   G +L++E++V        V
Sbjct: 149 ELGLPCVLKTATGGYDGKGQAVLRSEDELESAYRELAA--SGTELVLEKFVK-FACEISV 205

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTH--VLPAKIPLDIYKEVQRLAFLAHQAIG 239
           +   +      + P ++           N  H  V+PA++  D+ +   +LA    + +G
Sbjct: 206 IAARTPSGIVKSFPPAENV------HVNNILHLSVVPARVQSDVQRRACQLAERVAEGLG 259

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQP 266
             G+   +        +++  E+  +P
Sbjct: 260 AVGLLAVEMFVTE-DGELYVNELAPRP 285


>gi|312127766|ref|YP_003992640.1| phosphoribosylaminoimidazole carboxylase, atpase subunit
           [Caldicellulosiruptor hydrothermalis 108]
 gi|311777785|gb|ADQ07271.1| phosphoribosylaminoimidazole carboxylase, ATPase subunit
           [Caldicellulosiruptor hydrothermalis 108]
          Length = 403

 Score = 71.7 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 40/196 (20%), Positives = 75/196 (38%), Gaps = 14/196 (7%)

Query: 73  ELLEIPY-THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIK 131
           +L +  Y  +       +  DK + KQ+  S  +PV     V    +        P V K
Sbjct: 108 DLYDKGYHIYPSPYCLEVIQDKYKQKQMFKSANLPVPRFEKVTHLDVSFFEKFGFPCVQK 167

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVT 190
             KGG     +V+  D+     +L++ S+       +E+ VD   EL   V  +   DV 
Sbjct: 168 ASKGGYDGRGVVVINDKEDLNKVLETESF-------VEELVDIKKELAVMVARNKRGDVK 220

Query: 191 EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
              V +  F     + +++    V PA+I   I +  + +A    +A+   G+   +   
Sbjct: 221 SYPVVEMVF----EQSANILDFLVAPARIDEKIAQRAREVAIKVVEALDGVGVFGVELFL 276

Query: 251 DPLSRKVFWLEINVQP 266
                ++   E+  +P
Sbjct: 277 TK-DDEILINEVAPRP 291


>gi|260891339|ref|ZP_05902602.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Leptotrichia
           hofstadii F0254]
 gi|260858722|gb|EEX73222.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Leptotrichia
           hofstadii F0254]
          Length = 451

 Score = 71.7 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 75/220 (34%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     I +   I +        ++  DK  +++      VP+      
Sbjct: 77  AIHPGYGFLAENQRFAEICDKNGIVFIGPKPELISMMGDKATARETAIKHKVPITKGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGDQ 165
            +            I+ P +IK   GG   G+ +   ++ +         ++ +      
Sbjct: 137 IVPTVEEAKKVAEWITYPVMIKATAGGGGKGMRIAHNEKELVENYIAAQNEAKAAFGNPD 196

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+YV+    +   V+GD   +V  +            K           A I     
Sbjct: 197 VYIEKYVEEPRHVEIQVVGDKFGNVVHLGERDCSIQRRHQK----LIEESPSAGIDAKTR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +++ + A    + IG   +   +FL D      +++E+N 
Sbjct: 253 EKMGKFAAKLAKGIGYDSVGTLEFLVDKNMN-FYFMEMNT 291


>gi|302883132|ref|XP_003040468.1| hypothetical protein NECHADRAFT_44732 [Nectria haematococca mpVI
           77-13-4]
 gi|256721352|gb|EEU34755.1| hypothetical protein NECHADRAFT_44732 [Nectria haematococca mpVI
           77-13-4]
          Length = 1231

 Score = 71.7 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 32/237 (13%), Positives = 75/237 (31%), Gaps = 18/237 (7%)

Query: 39  DRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQ 98
             ++  +      D      +G   E+     ++    I +      +      K  ++ 
Sbjct: 65  GEAILDICKRTGADAIIPG-YGFLSENVEFADMVAAAGITFAGPSSKSIKAMGLKHEARA 123

Query: 99  VVSSCGVPVCPSILV---NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
           +  +  VPV P   +   +    D+   +  P ++K   GG  +G+ +   +  +     
Sbjct: 124 IAEAANVPVIPGTTLLASSEEATDAARRLGFPIMLKATGGGGGMGLQICHTEDEVEKAFA 183

Query: 156 QSSS-----WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLN 210
              S     + +    L + Y     +   V G+         V         L+     
Sbjct: 184 MVESRASTLFKNSGVFLEKYYPRSRHVEVQVAGNGE------VVVAFGERECSLQRRHQK 237

Query: 211 STHVLP---AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
                P    +    + +++ + A      +  + +   +FL D  + K F+LE+N 
Sbjct: 238 VIEECPSPFVERHPGLREKMLQAAIDYASQLNYKSVGTVEFLVDDETAKFFFLEMNT 294


>gi|300778662|ref|ZP_07088520.1| carbamoyl-phosphate synthase (glutamine-hydrolyzing) large subunit
           [Chryseobacterium gleum ATCC 35910]
 gi|300504172|gb|EFK35312.1| carbamoyl-phosphate synthase (glutamine-hydrolyzing) large subunit
           [Chryseobacterium gleum ATCC 35910]
          Length = 1060

 Score = 71.7 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 52/273 (19%), Positives = 101/273 (36%), Gaps = 31/273 (11%)

Query: 20  KACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58
           +AC S L++ G+KV  I         DV+            + V  ++   +PD     L
Sbjct: 32  QACLS-LKEEGYKVILINSNPATIMTDVEIADKVYIEPISLQFVSHIIRKERPDALLPTL 90

Query: 59  HGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
            G  G +  V+     ILE  ++    + + A   + D+   ++++     PV  S +VN
Sbjct: 91  GGQTGLNMAVELEKSGILEECKVEVLGTKLSAINRAEDRDLFRELMRELNEPVPESDIVN 150

Query: 115 --RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                +     I  P +++P       G  +   +  +          +   Q LIE+ +
Sbjct: 151 TVEGALAFADEIGYPVIVRPAFTMGGTGGGIASTEAELKEIAELGLKHSPVTQCLIEKSI 210

Query: 173 DG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
            G  E+   VM DA+ +   I V   +       ++  +        +    Y+ ++  +
Sbjct: 211 AGFKEIEYEVMRDANDNA--IVVCNMENIDPVGVHTGDSIVVAPSQTLSDREYQLLRNAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
               +A+G  G        DP S   + +E+N 
Sbjct: 269 LKIIRALGIEGGCNVQLALDPHSFNYYIIEVNP 301



 Score = 62.4 bits (151), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 21/213 (9%), Positives = 69/213 (32%), Gaps = 12/213 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           L    +    + +     + ++ + ++ +   G+P             +   + I  P +
Sbjct: 648 LASHGVQILGTSLEDLDRAENRDKFEKALQELGIPQPKGRTSTSKEEAIKIANEIGYPVL 707

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           ++P        + ++  +  +   +  +   +    +L+++Y+ G E+    + D    V
Sbjct: 708 VRPSYVLGGRAMEIVYAESELAHYMEHAVDASPEHPVLVDKYMVGKEIEVDAICDGETVV 767

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
               +   +       +S  +     P  I       +        + +   G+    ++
Sbjct: 768 IPGIMEHIERAGV---HSGDSIAVYPPQNISQIEIDTLVDYTKRLAKGLNVIGLMNIQYV 824

Query: 250 FDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277
                  V+ +E+N       P ++ ++  P  
Sbjct: 825 L--FEGNVYVIEVNPRSSRTVPFLSKITDVPMA 855


>gi|332524815|ref|ZP_08401007.1| propionyl-CoA carboxylase subunit alpha [Rubrivivax benzoatilyticus
           JA2]
 gi|332108116|gb|EGJ09340.1| propionyl-CoA carboxylase subunit alpha [Rubrivivax benzoatilyticus
           JA2]
          Length = 676

 Score = 71.7 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 41/220 (18%), Positives = 78/220 (35%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+      +E   I +      + A   DK+ SK++ +  GV   P    
Sbjct: 77  AIHPGYGFLSENEDFARRVEEEGIVFIGPKHYSIAAMGDKIASKKLANEAGVSTIPGWNE 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
            I      ++    I  P +IK   GG   G+ V   D+           ++ +    D+
Sbjct: 137 AIESPEQAVEIARGIGYPVMIKASAGGGGKGLRVAFNDKEAHEGFASCRNEAKNSFGDDR 196

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE++V+    +   V+GDA  +V  +   +        K             I     
Sbjct: 197 VFIEKFVEEPRHIEIQVLGDAHGNVVYLHERECSIQRRHQK----VIEEAPSPFISDATR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K +   A    +A+  +     +F      +  ++LE+N 
Sbjct: 253 KAMGEQAVALAKAVKYQSAGTVEF-VVGKDQSFYFLEMNT 291


>gi|307546738|ref|YP_003899217.1| carbamoyl phosphate synthase, large subunit [Halomonas elongata DSM
           2581]
 gi|307218762|emb|CBV44032.1| carbamoyl phosphate synthase, large subunit [Halomonas elongata DSM
           2581]
          Length = 1076

 Score = 71.7 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 48/278 (17%), Positives = 97/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + GF+V  +              D         ++V  ++   +PD    
Sbjct: 29  SGAQACKALREEGFRVILVNSNPATIMTDPVMADATYIEPITWQAVEKIIEAERPDAVLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      +LE   +    +   A   + D+    Q +   G+    + +
Sbjct: 89  TMGGQTALNCALDLDKHGVLEKFGVEMIGANADAINKAEDRDLFDQAMKRIGLECPKAKV 148

Query: 113 VNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +        Q  +  P +I+P       G  V    +       +    ++  +LLI++
Sbjct: 149 AHSMDEAWQIQGELGFPVIIRPSYTMGGSGGGVAYNKEEFEEICTRGFELSNNHELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + + +   A+   D           +S  V PA+ +    Y+ +
Sbjct: 209 SLLGWKEYEMEVVRDKNDNCIIVCAIENFDPMGVHT----GDSITVAPAQTLTDKEYQNM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  DP + +V  +E+N 
Sbjct: 265 RDASLAVLREIGVETGGSNVQFGVDPDTGRVVVIEMNP 302



 Score = 67.5 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/203 (14%), Positives = 70/203 (34%), Gaps = 22/203 (10%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQHLISPPYV 129
           LE   +P   +   A   + D+ R +Q++   G+   P+     F         I  P V
Sbjct: 653 LEAAGVPIIGTTPDAIDRAEDRERFQQMIDKLGLKQPPNATARSFEDAFAKAEAIGYPLV 712

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL--------IEQYVDGIELTCGV 181
           ++P        + ++     +   +  +   ++   +L        IE  +D +     V
Sbjct: 713 VRPSYVLGGRAMEIVYDATELENYMTHAVKVSNDSPVLLDHFLNAAIEVDIDAVSDGRQV 772

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241
           +    +   E A   S            ++  + P  +P D+  E++         +G +
Sbjct: 773 VIGGIMQHIEQAGVHSG----------DSACALPPYSLPADVQDEMRDQVKRMAVELGVK 822

Query: 242 GISRSDFLFDPLSRKVFWLEINV 264
           G+   +        +++ +E+N 
Sbjct: 823 GL--MNVQLAWQDGEIYVIEVNP 843


>gi|300984136|ref|ZP_07176887.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli MS
           200-1]
 gi|300306761|gb|EFJ61281.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli MS
           200-1]
          Length = 617

 Score = 71.7 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 97/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D +              V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +    Q +LE   +    +   A   + D+ R    +   G+    S +
Sbjct: 89  TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGI 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     +     +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHSMEEALAVAAEVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + +   +   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIEN----FDAMGIHTGDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RNASMAVLREIGVETGGSNVQFAVNPKNGRLIVIEMNP 302


>gi|170288289|ref|YP_001738527.1| phosphoribosylaminoimidazole carboxylase, ATPase subunit
           [Thermotoga sp. RQ2]
 gi|170175792|gb|ACB08844.1| phosphoribosylaminoimidazole carboxylase, ATPase subunit
           [Thermotoga sp. RQ2]
          Length = 380

 Score = 71.7 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 40/202 (19%), Positives = 77/202 (38%), Gaps = 17/202 (8%)

Query: 68  VQAILELLEIPY-THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP 126
           VQ + +L +  Y  H       +  DK   K+ +   G+PV     V     D +     
Sbjct: 75  VQTLKKLYDEGYKIHPSPYTLEIIQDKFIQKEFLKKNGIPVPRYKPVKDLESDVRE-FGF 133

Query: 127 PYVIKPLKGG-SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGD 184
           P V K  KGG    G+ +IK ++ +   +          +  +E++V+   EL   V  +
Sbjct: 134 PVVQKARKGGYDGRGVFIIKNEKDLENAI--------KGETYLEEFVEIEKELAVMVARN 185

Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244
              +     V +  ++  +    ++  T + PA+I     K  + +A    +A+   GI 
Sbjct: 186 EKGETACYPVVEM-YFDEDA---NICDTVIAPARIEEKHSKIAREIATSVVEALEGVGIF 241

Query: 245 RSDFLFDPLSRKVFWLEINVQP 266
             +        ++   EI  +P
Sbjct: 242 GIEMFLTKQ-GEILVNEIAPRP 262


>gi|42524926|ref|NP_970306.1| pyruvate carboxylase [Bdellovibrio bacteriovorus HD100]
 gi|39577137|emb|CAE80960.1| pyruvate carboxylase [Bdellovibrio bacteriovorus HD100]
          Length = 492

 Score = 71.7 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 38/223 (17%), Positives = 77/223 (34%), Gaps = 24/223 (10%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  FG   E+      +    + +      A     DK+  K++    G+P+ P    
Sbjct: 79  AVHPGFGFLSENADFAEAVNKAGLTFIGPSPEAIRALGDKVHCKELAKQAGLPLVPGYQG 138

Query: 114 NRFT----MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS----IPLDLLQSSSWNHGDQ 165
                   +     I  P ++K   GG   G+ ++K        I     ++ S     +
Sbjct: 139 ENQDVAHLITQAEKIGYPVIVKAAAGGGGRGMKLLKSSAEAHELIESAQREAQSAFGSPK 198

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA---KIPL 221
           + +E+Y+D    +   V GD++ +V         F+  E      +   +  A    +  
Sbjct: 199 VFLEKYLDRAKHIEFQVFGDSTGNV-------QHFFDRECSVQRRHQKIIEEATSPSLTD 251

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           D+ + +   A         +G    +FL      + + LE+N 
Sbjct: 252 DLRRRMGEAACAIATLGKYKGAGTVEFLL--QDGEFYLLEVNT 292


>gi|326406894|gb|ADZ63965.1| carbamoyl-phosphate synthase large subunit [Lactococcus lactis
           subsp. lactis CV56]
          Length = 1064

 Score = 71.7 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 46/268 (17%), Positives = 100/268 (37%), Gaps = 30/268 (11%)

Query: 25  ALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNVLHGNFG 63
           AL++ G++V  ++        DR +                +L   +PD     L G  G
Sbjct: 36  ALKEEGYEVVLVNSNPATIMTDREIADTVYIEPITLEFVSKILRKERPDALLPTLGGQTG 95

Query: 64  EDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFT 117
            +  ++     ILE L +    + + A   + D+   K++    G P+C S +       
Sbjct: 96  LNMAMELSKIGILEELNVELLGTKLSAIDQAEDRELFKELCERIGEPLCASDIATTVDEA 155

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IE 176
           ++    I  P +++P       G  +   ++ +   +      +   Q LIE+ + G  E
Sbjct: 156 VEIADKIGYPIIVRPAFTMGGTGGGICDTEEELREIVANGLKLSPVTQCLIEESIAGYKE 215

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +   VM D++ +   I V   + +     ++  +        +  + Y+ ++  +    +
Sbjct: 216 IEYEVMRDSADNA--IVVCNMENFDPVGVHTGDSIVFAPSQTLSDNEYQMLRDASLNIIR 273

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINV 264
           A+   G        DP S +   +E+N 
Sbjct: 274 ALKIEGGCNVQLALDPHSYEYRVIEVNP 301



 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 44/294 (14%), Positives = 97/294 (32%), Gaps = 32/294 (10%)

Query: 22  CASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ--- 69
           C  AL+  G +   I         D   S  L    L  +   N++     E  +VQ   
Sbjct: 577 CVKALQALGKEAIVINSNPETVSTDFSISDKLYFEPLTFEDVMNIIDLEQPEGVIVQFGG 636

Query: 70  -------AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--S 120
                    L    +    + +     + D+   ++ +    +P  P            +
Sbjct: 637 QTAINLAEPLSKAGVKILGTQVEDLDRAEDRDLFEKALQDLEIPQPPGATATNEEEAVAN 696

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            + I  P +I+P        + +I  ++ +   + ++   +    +L++ Y+ G E    
Sbjct: 697 ANKIGYPVLIRPSFVLGGRAMEIINNEKDLRDYMNRAVKASPEHPVLVDSYLQGRECEVD 756

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIG 239
            + D     TE+ +P    +       S +S  V P +    ++   +          + 
Sbjct: 757 AICDG----TEVLLPGIMEHIERAGVHSGDSMAVYPPQTFSQEVIDTIVDYTKRLAIGLN 812

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           C G+    F+      +V+ +E+N +   T     P ++        +L   M+
Sbjct: 813 CIGMMNIQFVI--FEEQVYVIEVNPRASRT----VPFLSKVTNIPMAQLATQMI 860


>gi|324012354|gb|EGB81573.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli MS
           60-1]
          Length = 616

 Score = 71.7 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 97/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D +              V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +    Q +LE   +    +   A   + D+ R    +   G+    S +
Sbjct: 89  TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGI 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     +     +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHSMEEALAVAAEVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + +   +   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIEN----FDAMGIHTGDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RNASMAVLREIGVETGGSNVQFAVNPKNGRLIVIEMNP 302


>gi|302871664|ref|YP_003840300.1| carbamoyl-phosphate synthase, large subunit [Caldicellulosiruptor
           obsidiansis OB47]
 gi|302574523|gb|ADL42314.1| carbamoyl-phosphate synthase, large subunit [Caldicellulosiruptor
           obsidiansis OB47]
          Length = 1077

 Score = 71.7 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 27/232 (11%), Positives = 80/232 (34%), Gaps = 18/232 (7%)

Query: 68  VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTMDSQHLIS 125
           + + L    +    + + +   + D+ +   ++    +P  P          +     I 
Sbjct: 646 MASYLAKNSVKILGTSMESIDAAEDRDKFLNLLKDLNIPYPPGGAAYSLEDAIKVAEKIG 705

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            P +++P        + ++     +   +  +   +    +LI++Y+ G E     + D 
Sbjct: 706 YPVLVRPSYVLGGRAMEIVYSRDELEKYIKAAIEISIKHPILIDKYILGKEAEVDGISDG 765

Query: 186 S---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCR 241
               +      + ++  +S        +S  V P   +   + +++        +A+   
Sbjct: 766 EDVLIPGIMEHIERAGVHS-------GDSMAVFPPHTLSEKVKEKIVDYTIKLARALRVV 818

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           G+    F+ D     V+ +E+N +   T     P ++   G    ++   ++
Sbjct: 819 GLFNIQFVIDKDEN-VYVIEVNPRASRT----VPILSKVTGIPMIKIATKLI 865



 Score = 65.9 bits (160), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 48/288 (16%), Positives = 108/288 (37%), Gaps = 37/288 (12%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFN---------- 56
           G ++E + S   G     AL++ G +V  ++ + +  +    +  D  +           
Sbjct: 21  GQAAEFDYS---GTQACRALKEEGIEVVLVNSNPATIMTDTEI-ADRVYIEPISVDYIEE 76

Query: 57  ---------VLHGNFGEDG-------LVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
                    +L G  G+             ILE   +    + +     + D+   K+ +
Sbjct: 77  IIKKEKPQGLLAGLGGQTALNMAFELAEAGILEKYGVCLLGTSLETIKKAEDRELFKKTM 136

Query: 101 SSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS 158
              G PV  SI+ +  +  ++    +  P +++P       G  +   ++ +     +  
Sbjct: 137 IEIGEPVPKSIIAHSVQEAIEFAREVGYPVIVRPAYTLGGTGGGIAYNEEELRYIASKGL 196

Query: 159 SWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
             +   Q+LIEQ V G  E+   VM D++ +   I V   +     +   + +S  V P+
Sbjct: 197 KLSLIHQVLIEQSVLGWKEIEYEVMRDSNDN--CITVCNMENID-PVGIHTGDSIVVAPS 253

Query: 218 K-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +    Y+ ++  +    +++   G     F  +P S +   +E+N 
Sbjct: 254 QTLSDKEYQMLRSASLNIIRSLKIEGGCNVQFALNPNSMEYVVIEVNP 301


>gi|297694350|ref|XP_002824442.1| PREDICTED: propionyl-CoA carboxylase alpha chain,
           mitochondrial-like isoform 3 [Pongo abelii]
          Length = 681

 Score = 71.7 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 76/220 (34%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      L   ++ +      A     DK+ SK +     V   P    
Sbjct: 138 AVHPGYGFLSENKEFARCLAAEDVIFIGPDTHAIQAMGDKIESKLLAKKAEVNTIPGFDG 197

Query: 112 LVNRFTMDS--QHLISPPYVIKPLKGGSSLGIIVIKKDQS----IPLDLLQSSSWNHGDQ 165
           +V            I  P +IK   GG   G+ +   D+       L   +++S    D+
Sbjct: 198 VVKDAEEAVRIAREIGYPVMIKASAGGGGKGMRIAWDDEETRDGFRLSSQEAASSFGDDR 257

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           LLIE+++D    +   V+GD   +   +   +        K             + ++  
Sbjct: 258 LLIEKFIDNPRHIEIQVLGDKHGNALWLNERECSIQRRNQK----VVEEAPSIFLDVETR 313

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +   A    +A+        +FL D      ++LE+N 
Sbjct: 314 RAMGEQAVALARAVKYSSAGTVEFLVDSKKN-FYFLEMNT 352


>gi|261819608|ref|YP_003257714.1| acetyl-CoA carboxylase biotin carboxylase subunit [Pectobacterium
           wasabiae WPP163]
 gi|261603621|gb|ACX86107.1| acetyl-CoA carboxylase, biotin carboxylase [Pectobacterium wasabiae
           WPP163]
          Length = 447

 Score = 71.7 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 39/222 (17%), Positives = 81/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         L  DK+ +   +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAEQVERSGFIFIGPRAETIRLMGDKVSAITAMKKAGVPTVPGSDG 136

Query: 112 -LVNRFTMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
            L +    +  H   I  P +IK   GG   G+ V++ D+ +   +     ++ +  + D
Sbjct: 137 PLTDDMDANRVHAKRIGYPVIIKASGGGGGRGMRVVRSDKELEQSINMTRAEAKAAFNND 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+Y++    +   ++ D       +A           K          PA  I  +
Sbjct: 197 MVYMEKYLENPRHVEIQILADGQGHAVYLAERDCSMQRRHQK-----VVEEAPAPGITDE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + + +      A   I  RG    +FL+   + + +++E+N 
Sbjct: 252 LRRNIGDRCAKACIDINYRGAGTFEFLY--ENGEFYFIEMNT 291


>gi|237720267|ref|ZP_04550748.1| pyruvate carboxylase subunit A [Bacteroides sp. 2_2_4]
 gi|229450819|gb|EEO56610.1| pyruvate carboxylase subunit A [Bacteroides sp. 2_2_4]
          Length = 504

 Score = 71.7 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 82/220 (37%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       +   I +            DK+ ++  +   GVPV P    
Sbjct: 77  AIHPGYGFLSENATFARRCQEEGIIFIGPNPETMEAMGDKIAARIKMIEAGVPVVPGTQD 136

Query: 114 NRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
           N  +++      + I  P ++K   GG   G+ +I   + +      + S +      D 
Sbjct: 137 NLKSVEEAIELCNKIGYPVMLKASMGGGGKGMRLIHSAEEVEEAYTTAKSESLSSFGDDT 196

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E++V+    +   ++GD   +V  +   +        K             +  ++ 
Sbjct: 197 VYLEKFVEEPHHIEFQILGDKHGNVIHLCERECSVQRRNQKI----VEETPSVFVTPELR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K++   A  A +A+   G    +FL D   R  ++LE+N 
Sbjct: 253 KDMGEKAVAAAKAVNYIGAGTIEFLVDKH-RNYYFLEMNT 291


>gi|77919553|ref|YP_357368.1| pyruvate carboxylase [Pelobacter carbinolicus DSM 2380]
 gi|77545636|gb|ABA89198.1| pyruvate carboxylase [Pelobacter carbinolicus DSM 2380]
          Length = 1148

 Score = 71.7 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 50/287 (17%), Positives = 96/287 (33%), Gaps = 46/287 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKV--------SQIDVDRSVGLVLAHLKPD 52
           +A+     S E  VSL        A  D  +KV        + + +D  +  +      D
Sbjct: 33  VAI----YSEEDRVSLHR----YKA--DESYKVGKGKGPIEAYLGIDE-IIDLAKKKDVD 81

Query: 53  LAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109
                +H  +G   E+       E   I     G        DK+ +++V     VPV P
Sbjct: 82  ----AIHPGYGFLSENPEFAEACEKAGIALIGPGATIQRQLGDKVAARKVAIEAAVPVVP 137

Query: 110 S----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWN 161
                +      +        P +IK   GG   G+ + +  Q +   L     ++ +  
Sbjct: 138 GTDKPVTSEEEALLFAAKCGYPIMIKAAAGGGGRGMRIARNRQELAEGLRSASSEAKAAF 197

Query: 162 HGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYE--LKYSSLNSTHVLP-A 217
               + +E+Y++    +   +MGD   +V         FY  +  ++        + P  
Sbjct: 198 GNPSVFLEKYLENPKHVEVQIMGDKYGNVVH-------FYDRDCSIQRRHQKVIEIAPSP 250

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +     +E+   A      +G       +FL D      +++E+N 
Sbjct: 251 NLSAAKRQELCDYALRIANHVGYVNAGTVEFLMDA-DGNFYFIEVNT 296


>gi|15673345|ref|NP_267519.1| carbamoyl phosphate synthase large subunit [Lactococcus lactis
           subsp. lactis Il1403]
 gi|22095527|sp|Q9CFV2|CARB_LACLA RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|12724347|gb|AAK05461.1|AE006368_5 carbamoylphosphate synthetase [Lactococcus lactis subsp. lactis
           Il1403]
          Length = 1064

 Score = 71.7 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 46/268 (17%), Positives = 100/268 (37%), Gaps = 30/268 (11%)

Query: 25  ALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNVLHGNFG 63
           AL++ G++V  ++        DR +                +L   +PD     L G  G
Sbjct: 36  ALKEEGYEVVLVNSNPATIMTDREIADTVYIEPITLEFVSKILRKERPDALLPTLGGQTG 95

Query: 64  EDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFT 117
            +  ++     ILE L +    + + A   + D+   K++    G P+C S +       
Sbjct: 96  LNMAMELSKIGILEELNVELLGTKLSAIDQAEDRELFKELCERIGEPLCASDIATTVDEA 155

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IE 176
           ++    I  P +++P       G  +   ++ +   +      +   Q LIE+ + G  E
Sbjct: 156 VEIADKIGYPIIVRPAFTMGGTGGGICDTEEELREIVANGLKLSPVTQCLIEESIAGYKE 215

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +   VM D++ +   I V   + +     ++  +        +  + Y+ ++  +    +
Sbjct: 216 IEYEVMRDSADNA--IVVCNMENFDPVGVHTGDSIVFAPSQTLSDNEYQMLRDASLNIIR 273

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINV 264
           A+   G        DP S +   +E+N 
Sbjct: 274 ALKIEGGCNVQLALDPHSYEYRVIEVNP 301



 Score = 68.6 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 45/294 (15%), Positives = 97/294 (32%), Gaps = 32/294 (10%)

Query: 22  CASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ--- 69
           C  AL+  G +   I         D   S  L    L  +   N++     E  +VQ   
Sbjct: 577 CVKALQALGKEAIVINSNPETVSTDFSISDKLYFEPLTFEDVMNIIDLEQPEGVIVQFGG 636

Query: 70  -------AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--S 120
                    L    +    + +     + D+   ++ +    +P  P            +
Sbjct: 637 QTAINLAEPLSKAGVKILGTQVEDLDRAEDRDLFEKALQDLEIPQPPGATATNEEEAVAN 696

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            + I  P +I+P        + +I  ++ +   + ++   +    +L++ Y+ G E    
Sbjct: 697 ANKIGYPVLIRPSFVLGGRAMEIINNEKDLRDYMNRAVKASPEHPVLVDSYLQGRECEVD 756

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIG 239
            + D     TE+ +P    +       S +S  V P +    +I   +          + 
Sbjct: 757 AICDG----TEVLLPGIMEHIERAGVHSGDSMAVYPPQTFSQEIIDTIVDYTKRLAIGLN 812

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           C G+    F+      +V+ +E+N +   T     P ++        +L   M+
Sbjct: 813 CIGMMNIQFVI--FEEQVYVIEVNPRASRT----VPFLSKVTNIPMAQLATQMI 860


>gi|281491906|ref|YP_003353886.1| carbamoyl-phosphate synthase, large chain [Lactococcus lactis
           subsp. lactis KF147]
 gi|281375615|gb|ADA65119.1| Carbamoyl-phosphate synthase, large chain [Lactococcus lactis
           subsp. lactis KF147]
          Length = 1064

 Score = 71.7 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 46/268 (17%), Positives = 100/268 (37%), Gaps = 30/268 (11%)

Query: 25  ALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNVLHGNFG 63
           AL++ G++V  ++        DR +                +L   +PD     L G  G
Sbjct: 36  ALKEEGYEVVLVNSNPATIMTDREIADTVYIEPITLEFVSKILRKERPDALLPTLGGQTG 95

Query: 64  EDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFT 117
            +  ++     ILE L +    + + A   + D+   K++    G P+C S +       
Sbjct: 96  LNMAMELSKIGILEELNVELLGTKLSAIDQAEDRELFKELCERIGEPLCASDIATTVDEA 155

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IE 176
           ++    I  P +++P       G  +   ++ +   +      +   Q LIE+ + G  E
Sbjct: 156 VEIADKIGYPIIVRPAFTMGGTGGGICDTEEELREIVANGLKLSPVTQCLIEESIAGYKE 215

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +   VM D++ +   I V   + +     ++  +        +  + Y+ ++  +    +
Sbjct: 216 IEYEVMRDSADNA--IVVCNMENFDPVGVHTGDSIVFAPSQTLSDNEYQMLRDASLNIIR 273

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINV 264
           A+   G        DP S +   +E+N 
Sbjct: 274 ALKIEGGCNVQLALDPHSYEYRVIEVNP 301



 Score = 68.6 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 45/294 (15%), Positives = 97/294 (32%), Gaps = 32/294 (10%)

Query: 22  CASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ--- 69
           C  AL+  G +   I         D   S  L    L  +   N++     E  +VQ   
Sbjct: 577 CVKALQALGKEAIVINSNPETVSTDFSISDKLYFEPLTFEDVMNIIDLEQPEGVIVQFGG 636

Query: 70  -------AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--S 120
                    L    +    + +     + D+   ++ +    +P  P            +
Sbjct: 637 QTAINLAEPLSKAGVKILGTQVEDLDRAEDRDLFEKALQDLEIPQPPGATATNEEEAVAN 696

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            + I  P +I+P        + +I  ++ +   + ++   +    +L++ Y+ G E    
Sbjct: 697 ANKIGYPVLIRPSFVLGGRAMEIINNEKDLRDYMNRAVKASPEHPVLVDSYLQGRECEVD 756

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIG 239
            + D     TE+ +P    +       S +S  V P +    +I   +          + 
Sbjct: 757 AICDG----TEVLLPGIMEHIERAGVHSGDSMAVYPPQTFSQEIIDTIVDYTKRLAIGLN 812

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           C G+    F+      +V+ +E+N +   T     P ++        +L   M+
Sbjct: 813 CIGMMNIQFVI--FEEQVYVIEVNPRASRT----VPFLSKVTNIPMAQLATQMI 860


>gi|89075349|ref|ZP_01161771.1| acetyl-CoA carboxylase [Photobacterium sp. SKA34]
 gi|89048898|gb|EAR54467.1| acetyl-CoA carboxylase [Photobacterium sp. SKA34]
          Length = 447

 Score = 71.7 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 78/222 (35%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      +E     +         L  DK+ +   +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAEQVERSGFIFVGPKADTIRLMGDKVSAITAMKKAGVPCVPGSDG 136

Query: 114 NRFTMDSQHL-----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GD 164
                ++++      I  P +IK   GG   G+ V++ ++ +   +  + +        D
Sbjct: 137 PLDDDEAKNKSFAKRIGYPVIIKASGGGGGRGMRVVRSEEELTEAIAMTRAEAKSCFNND 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+Y++    +   V+ D       +            K          PA  I  +
Sbjct: 197 MVYMEKYLENPRHIEVQVLADGQGGAIHLGERDCSMQRRHQK-----VVEEAPAPGITEE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + K +      A   I  RG    +FL+   + + +++E+N 
Sbjct: 252 MRKYIGERCTRACLEINYRGAGTFEFLY--ENGEFYFIEMNT 291


>gi|331695398|ref|YP_004331637.1| Biotin carboxylase [Pseudonocardia dioxanivorans CB1190]
 gi|326950087|gb|AEA23784.1| Biotin carboxylase [Pseudonocardia dioxanivorans CB1190]
          Length = 465

 Score = 71.7 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 42/241 (17%), Positives = 83/241 (34%), Gaps = 16/241 (6%)

Query: 33  VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
            S +DV   +   L     D      +G   E   +        I +      +     D
Sbjct: 58  ASYLDVGAVISAALL-TGCDAVHPG-YGFLSEQPELVEQCARHGITFVGPSAESIRRGGD 115

Query: 93  KMRSKQVVSSCGVPVC---PSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS 149
           K+ ++++     +P+     +I       D    +  P ++K   GG   G+  +     
Sbjct: 116 KIAARELARGLDIPLGAGSDAIDTVEEAADLAARVGYPVLLKAAAGGGGRGMRRVDAPAQ 175

Query: 150 IPLDLLQSSSWNH----GDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYEL 204
           +   ++++ +         +L IE YV+    +   V+ DA      +        SY+ 
Sbjct: 176 LADAVVRARAEAQSAFGDGRLYIEHYVEHARHVEVQVLADALGTTVHLG---DRDCSYQR 232

Query: 205 KYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
           +Y  L      PA  +P ++ + +   A     A+   G    +FL D       +LE+N
Sbjct: 233 RYQKL--VEEAPASAVPEELRRRIGEAAVALISALDYVGAGTVEFLVDVDRDTFSFLEVN 290

Query: 264 V 264
            
Sbjct: 291 T 291


>gi|262273278|ref|ZP_06051093.1| biotin carboxylase of acetyl-CoA carboxylase [Grimontia hollisae
           CIP 101886]
 gi|262222651|gb|EEY73961.1| biotin carboxylase of acetyl-CoA carboxylase [Grimontia hollisae
           CIP 101886]
          Length = 448

 Score = 71.7 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 78/222 (35%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         L  DK+ +   +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAEQVEQSGFIFVGPRAETIRLMGDKVSAINAMKKAGVPCVPGSDG 136

Query: 112 LVNRFTM---DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
            ++            I  P +IK   GG   G+ V++ +  +   +     ++ +  + D
Sbjct: 137 PLDDDAAKNKAFAKRIGYPVIIKASGGGGGRGMRVVRSEAELTDAIAMTRAEAKAAFNND 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E++++    +   V+ D       +            K          PA  I  +
Sbjct: 197 MVYMEKFLENPRHVEVQVLADGQGGAIHLGERDCSMQRRHQK-----VVEEAPAPGITAE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + K +      A   IG RG    +FL+   + + +++E+N 
Sbjct: 252 MRKYIGERCCRACIEIGYRGAGTFEFLY--ENGEFYFIEMNT 291


>gi|160883496|ref|ZP_02064499.1| hypothetical protein BACOVA_01465 [Bacteroides ovatus ATCC 8483]
 gi|156111216|gb|EDO12961.1| hypothetical protein BACOVA_01465 [Bacteroides ovatus ATCC 8483]
          Length = 511

 Score = 71.7 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 82/220 (37%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       +   I +            DK+ ++  +   GVPV P    
Sbjct: 84  AIHPGYGFLSENATFARRCQEEGIIFIGPNPETMEAMGDKIAARIKMIEAGVPVVPGTQD 143

Query: 114 NRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
           N  +++      + I  P ++K   GG   G+ +I   + +      + S +      D 
Sbjct: 144 NLKSVEEAIELCNKIGYPVMLKASMGGGGKGMRLIHSAEEVEEAYTTAKSESLSSFGDDT 203

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E++V+    +   ++GD   +V  +   +        K             +  ++ 
Sbjct: 204 VYLEKFVEEPHHIEFQILGDKHGNVIHLCERECSVQRRNQKI----VEETPSVFVTPELR 259

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K++   A  A +A+   G    +FL D   R  ++LE+N 
Sbjct: 260 KDMGEKAVAAAKAVNYIGAGTIEFLVDKH-RNYYFLEMNT 298


>gi|91209092|ref|YP_539078.1| carbamoyl phosphate synthase large subunit [Escherichia coli UTI89]
 gi|117622323|ref|YP_851236.1| carbamoyl phosphate synthase large subunit [Escherichia coli APEC
           O1]
 gi|218556971|ref|YP_002389884.1| carbamoyl phosphate synthase large subunit [Escherichia coli S88]
 gi|237704175|ref|ZP_04534656.1| carbamoyl-phosphate synthase subunit large [Escherichia sp.
           3_2_53FAA]
 gi|91070666|gb|ABE05547.1| Carbamoyl-phosphate synthase large chain [Escherichia coli UTI89]
 gi|115511447|gb|ABI99521.1| carbamoyl-phosphate synthase large subunit [Escherichia coli APEC
           O1]
 gi|218363740|emb|CAR01400.1| carbamoyl-phosphate synthase large subunit [Escherichia coli S88]
 gi|226902087|gb|EEH88346.1| carbamoyl-phosphate synthase subunit large [Escherichia sp.
           3_2_53FAA]
 gi|294490354|gb|ADE89110.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli
           IHE3034]
 gi|307629605|gb|ADN73909.1| carbamoyl phosphate synthase large subunit [Escherichia coli UM146]
 gi|315285004|gb|EFU44449.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli MS
           110-3]
 gi|315298450|gb|EFU57705.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli MS
           16-3]
 gi|323950478|gb|EGB46356.1| carbamoyl-phosphate synthase [Escherichia coli H252]
 gi|323955229|gb|EGB51002.1| carbamoyl-phosphate synthase [Escherichia coli H263]
          Length = 1073

 Score = 71.7 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 97/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D +              V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +    Q +LE   +    +   A   + D+ R    +   G+    S +
Sbjct: 89  TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGI 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     +     +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHSMEEALAVAAEVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + +   +   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIEN----FDAMGIHTGDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RNASMAVLREIGVETGGSNVQFAVNPKNGRLIVIEMNP 302



 Score = 60.5 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 29/197 (14%), Positives = 74/197 (37%), Gaps = 10/197 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           LE   +P   +   A   + D+ R +  V    +    +  V      ++    I  P V
Sbjct: 654 LEAAGVPVIGTSPDAIDRAEDRERFQHAVERLKLKQPANATVTTIEMAVEKAKEIGYPLV 713

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  +  +      + S ++   +L++ ++ D +E+    + D  + 
Sbjct: 714 VRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDDAVEVDVDAICDGEMV 773

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           +    +   +    +    S +S   LPA  +  +I   +++        +  RG+    
Sbjct: 774 LIGGIMEHIE----QAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRGLMNVQ 829

Query: 248 FLFDPLSRKVFWLEINV 264
           F     + +V+ +E+N 
Sbjct: 830 FAV--KNNEVYLIEVNP 844


>gi|331270309|ref|YP_004396801.1| carbamoyl-phosphate synthase, large subunit [Clostridium botulinum
           BKT015925]
 gi|329126859|gb|AEB76804.1| carbamoyl-phosphate synthase, large subunit [Clostridium botulinum
           BKT015925]
          Length = 1063

 Score = 71.7 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 40/265 (15%), Positives = 100/265 (37%), Gaps = 34/265 (12%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ------ 69
           A+ +AG++   +         D D S  L    L  D   NV+     +  ++Q      
Sbjct: 580 AINNAGYESIMVNNNPETVSTDFDTSDKLYFESLYIDDVMNVIRKENPKGVILQFGGQTS 639

Query: 70  -AILELL---EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHL 123
             + E L    +    +   +  L+ D+ + ++++ S  +       V   +        
Sbjct: 640 INLAEKLAKRGVNILGTSFKSIDLAEDREKFRELLESLDIKTPTGRPVTCIKEAYKVVEK 699

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           +  P +++P        + VI  D+++   + ++ S +    +++++YV G E+    + 
Sbjct: 700 LGYPVIVRPSYVIGGRAMEVIYDDKALEKYMKEAVSLSTEHTIIVDKYVRGTEIEVDAIC 759

Query: 184 DAS---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIG 239
           D     +      + ++  +S        +S  V P   +  D+  ++        +A+ 
Sbjct: 760 DGEDVLMPGIMEHIERTGVHS-------GDSITVYPYMTLKEDVIDKLVDNTKKIAKALK 812

Query: 240 CRGISRSDFLFDPLSRKVFWLEINV 264
             G+    ++FD     ++ +E+N 
Sbjct: 813 IVGLMNIQYVFDGKD--IYVIEVNP 835



 Score = 51.3 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 37/199 (18%), Positives = 73/199 (36%), Gaps = 7/199 (3%)

Query: 70  AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-ILVN-RFTMDSQHLISPP 127
            +LE   +        +   + D+   K ++   G P+  S I VN     +       P
Sbjct: 106 GVLEKYNVKLLGINGESIKKAEDREEFKDLMLQIGEPIPESTIAVNIEECKEFVEKHGLP 165

Query: 128 YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDAS 186
            +I+P       G  +    +            +  +Q+L+E+ V G  EL   V+ D  
Sbjct: 166 IIIRPAYTLGGTGGGIANTMEEYLQICDLGLKMSPINQILLERSVAGWKELEYEVIRDKK 225

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISR 245
            +   I   ++      +   + +S  V P++ +    Y  ++  A    +++   G   
Sbjct: 226 DNCIIICNMEN---IDPVGVHTGDSIVVAPSQTLTDKEYHMLRNSALKIIRSLKIEGGCN 282

Query: 246 SDFLFDPLSRKVFWLEINV 264
             F  DP+S K   +E+N 
Sbjct: 283 IQFALDPISNKYIVIEVNP 301


>gi|323964869|gb|EGB60336.1| carbamoyl-phosphate synthase [Escherichia coli M863]
 gi|323975800|gb|EGB70896.1| carbamoyl-phosphate synthase [Escherichia coli TW10509]
 gi|327255008|gb|EGE66611.1| carbamoyl-phosphate synthase large chain [Escherichia coli STEC_7v]
          Length = 1072

 Score = 71.7 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 97/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D +              V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +    Q +LE   +    +   A   + D+ R    +   G+    S +
Sbjct: 89  TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGI 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     +     +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHTMEEALAVAAEVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + +   +   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIEN----FDAMGIHTGDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RNASMAVLREIGVETGGSNVQFAVNPKNGRLIVIEMNP 302



 Score = 60.1 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 30/197 (15%), Positives = 74/197 (37%), Gaps = 10/197 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYV 129
           LE   +P   +   A   + D+ R +  V    +    +  V    M  +    I  P V
Sbjct: 653 LEAAGVPVIGTSPDAIDRAEDRERFQHAVDRLKLKQPANATVTAIEMAVEKAKEIGYPLV 712

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  +  +      + S ++   +L++ ++ D +E+    + D  + 
Sbjct: 713 VRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDDAVEVDVDAICDGEMV 772

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           +    +   +    +    S +S   LPA  +  +I   +++        +  RG+    
Sbjct: 773 LIGGIMEHIE----QAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRGLMNVQ 828

Query: 248 FLFDPLSRKVFWLEINV 264
           F     + +V+ +E+N 
Sbjct: 829 FAV--KNNEVYLIEVNP 843


>gi|300948636|ref|ZP_07162720.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli MS
           116-1]
 gi|300956962|ref|ZP_07169214.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli MS
           175-1]
 gi|301024778|ref|ZP_07188416.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli MS
           196-1]
 gi|331650924|ref|ZP_08351952.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli M718]
 gi|299880268|gb|EFI88479.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli MS
           196-1]
 gi|300316252|gb|EFJ66036.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli MS
           175-1]
 gi|300451862|gb|EFK15482.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli MS
           116-1]
 gi|323939747|gb|EGB35949.1| carbamoyl-phosphate synthase [Escherichia coli E482]
 gi|331051378|gb|EGI23427.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli M718]
          Length = 1072

 Score = 71.7 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 97/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D +              V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +    Q +LE   +    +   A   + D+ R    +   G+    S +
Sbjct: 89  TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGI 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     +     +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHSMEEALAVAAEVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + +   +   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIEN----FDAMGIHTGDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RNASMAVLREIGVETGGSNVQFAVNPKNGRLIVIEMNP 302



 Score = 60.1 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 30/197 (15%), Positives = 74/197 (37%), Gaps = 10/197 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYV 129
           LE   +P   +   A   + D+ R +  V    +    +  V    M  +    I  P V
Sbjct: 653 LEAAGVPVIGTSPDAIDRAEDRERFQHAVDRLKLKQPANATVTAIEMAVEKAKEIGYPLV 712

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  +  +      + S ++   +L++ ++ D +E+    + D  + 
Sbjct: 713 VRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDDAVEVDVDAICDGEMV 772

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           +    +   +    +    S +S   LPA  +  +I   +++        +  RG+    
Sbjct: 773 LIGGIMEHIE----QAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRGLMNVQ 828

Query: 248 FLFDPLSRKVFWLEINV 264
           F     + +V+ +E+N 
Sbjct: 829 FAV--KNNEVYLIEVNP 843


>gi|299069331|emb|CBJ40597.1| Biotin carboxylase (Acetyl-CoA carboxylase subunit A) (ACC)
           [Ralstonia solanacearum CMR15]
          Length = 463

 Score = 71.7 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 78/222 (35%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--I 111
            +H  +G   E+    A +    + +            DK+ +K+ +   GVP  P    
Sbjct: 85  AIHPGYGFLSENAGFVARVADAGLTFIGPSADCIRTMGDKVSAKRAMREAGVPCVPGPDT 144

Query: 112 LVNRFTMDS---QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
            +     +     H I  P ++K   GG   G+ V+ +  ++   L     ++       
Sbjct: 145 SLPEDPAEVLAIAHGIGFPVIVKAAGGGGGRGMRVVHEASALADALALTREEARRAFGNP 204

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
           ++ IE+++     +   V+ D       +           L+          PA  I   
Sbjct: 205 EVYIEKFLTHPRHVEIQVLADRYGHAVWL-----GSRDCSLQRRHQKVIEEAPAPGIDAA 259

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +  EV      A + IG  G+   +FL+   +   +++E+N 
Sbjct: 260 LIAEVGERCAAACRQIGYCGVGTFEFLY--ENGAFYFIEMNT 299


>gi|299533490|ref|ZP_07046870.1| carbamoyl-phosphate synthase L chain [Comamonas testosteroni S44]
 gi|298718547|gb|EFI59524.1| carbamoyl-phosphate synthase L chain [Comamonas testosteroni S44]
          Length = 657

 Score = 71.7 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 43/216 (19%), Positives = 81/216 (37%), Gaps = 17/216 (7%)

Query: 59  HGNFGED-GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI----LV 113
           +G   ED G  QA+ E   + +      A      K  +KQ+  + GVP  P        
Sbjct: 81  YGFLSEDAGFAQAVQE-AGLIWIGPPPAAIRQLGSKAAAKQLAKAHGVPCLPGYEGDDQC 139

Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGDQLLIE 169
           +    D   +I  P ++K + GG   G+ +++  Q +   L     ++ +      LL+E
Sbjct: 140 DARFADEAAMIGYPVMVKAVAGGGGRGMRLVESAQQLHAALNSARSEALAGFGNGDLLVE 199

Query: 170 QYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           + V     +   V  D    V  +            K    +     PA + +++ +++ 
Sbjct: 200 RAVMHPRHVEVQVFADGHGHVIHLGERDCSVQRRHQKIIEESP---SPA-VNVELREQMG 255

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             A    +A G  G    +FL     R+ + +E+N 
Sbjct: 256 NCAVALAKAAGYVGAGTVEFLV--EGRQFYLMEMNT 289


>gi|254718240|ref|ZP_05180051.1| acetyl-CoA carboxylase alpha chain / propionyl-CoA carboxylase
           alpha chain [Brucella sp. 83/13]
 gi|265983199|ref|ZP_06095934.1| carbamoyl-phosphate synthase subunit L ATP-binding protein
           [Brucella sp. 83/13]
 gi|264661791|gb|EEZ32052.1| carbamoyl-phosphate synthase subunit L ATP-binding protein
           [Brucella sp. 83/13]
          Length = 627

 Score = 71.7 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 40/225 (17%), Positives = 74/225 (32%), Gaps = 22/225 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      +E   + +      A      K  +K ++   GVPV P    
Sbjct: 49  AIHPGYGFLSENPAFVDAVEEAGLIFIGPSAKAIRAMGLKDAAKALMEKAGVPVVPGYHG 108

Query: 114 NRFT----MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
           +             I+ P +IK   GG   G+  +         L     ++ +      
Sbjct: 109 DNQDGAFLKSEADRITYPVLIKARAGGGGKGMRRVDSAADFAAALESARREAEASFGDGA 168

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           +L+E+Y+     +   V GD   +               L+          PA  +  ++
Sbjct: 169 VLVEKYMAKPRHIEVQVFGDNHGNAV-----HLFERDCSLQRRHQKVIEEAPAPGMTEEM 223

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR----KVFWLEINV 264
              +   A  A  AIG  G    +F+ D        + F++E+N 
Sbjct: 224 RAAMGEAAVKAALAIGYSGAGTVEFIADVSEGLRPDRFFFMEMNT 268


>gi|218687908|ref|YP_002396120.1| carbamoyl phosphate synthase large subunit [Escherichia coli ED1a]
 gi|218425472|emb|CAR06254.1| carbamoyl-phosphate synthase large subunit [Escherichia coli ED1a]
          Length = 1073

 Score = 71.7 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 97/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D +              V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +    Q +LE   +    +   A   + D+ R    +   G+    S +
Sbjct: 89  TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGI 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     +     +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHSMEEALAVAAEVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + +   +   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIEN----FDAMGIHTGDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RNASMAVLREIGVETGGSNVQFAVNPKNGRLIVIEMNP 302



 Score = 60.5 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 29/197 (14%), Positives = 74/197 (37%), Gaps = 10/197 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           LE   +P   +   A   + D+ R +  V    +    +  V      ++    I  P V
Sbjct: 654 LEAAGVPVIGTSPDAIDRAEDRERFQHAVERLKLKQPANATVTTIEMAVEKAKEIGYPLV 713

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  +  +      + S ++   +L++ ++ D +E+    + D  + 
Sbjct: 714 VRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDDAVEVDVDAICDGEMV 773

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           +    +   +    +    S +S   LPA  +  +I   +++        +  RG+    
Sbjct: 774 LIGGIMEHIE----QAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRGLMNVQ 829

Query: 248 FLFDPLSRKVFWLEINV 264
           F     + +V+ +E+N 
Sbjct: 830 FAV--KNNEVYLIEVNP 844


>gi|254446703|ref|ZP_05060178.1| urea carboxylase [Verrucomicrobiae bacterium DG1235]
 gi|198256128|gb|EDY80437.1| urea carboxylase [Verrucomicrobiae bacterium DG1235]
          Length = 1194

 Score = 71.7 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 47/259 (18%), Positives = 90/259 (34%), Gaps = 36/259 (13%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       E   I +             K  S+Q+  +  VP+ P   +
Sbjct: 77  AIHPGYGLLSENADFATACETAGIAFIGPTPKQITEFGLKHTSRQIAIANDVPLLPGTEL 136

Query: 114 NRFTMDSQHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL-QSSSWNHG---DQL 166
                D+Q     I  P ++K   GG  +GI +   DQ +            H      +
Sbjct: 137 LDTYEDAQAAASEIGYPIMLKSTGGGGGIGIRLCWNDQELHESFDSIKRLCEHNFGNSGV 196

Query: 167 LIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIY 224
            IE++V     +   + GD +  V  +           ++  +       PA  +  +  
Sbjct: 197 FIEKFVQRARHIEAQIFGDGNGKVIALGE-----RDCSVQRRNQKVIEETPAPALSSEQR 251

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY---- 280
            ++   A    QA+  R     +F++D   +K ++LE+N +              +    
Sbjct: 252 ADLLNTAVRLSQAVKYRSAGTVEFVYDVDEKKFYFLEVNTR----------LQVEHCVTE 301

Query: 281 --AGYSFRELLLWMVEDAS 297
              G    +L+ WMV+ A+
Sbjct: 302 EVTGV---DLVEWMVKQAA 317


>gi|170768490|ref|ZP_02902943.1| carbamoyl-phosphate synthase, large subunit [Escherichia albertii
           TW07627]
 gi|170122594|gb|EDS91525.1| carbamoyl-phosphate synthase, large subunit [Escherichia albertii
           TW07627]
          Length = 1073

 Score = 71.7 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 97/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D +              V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +    Q +LE   +    +   A   + D+ R    +   G+    S +
Sbjct: 89  TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGI 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     +     +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHSMEEALAVAAEVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + +   +   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIEN----FDAMGIHTGDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RNASMAVLREIGVETGGSNVQFAVNPKNGRLIVIEMNP 302



 Score = 59.8 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 29/197 (14%), Positives = 74/197 (37%), Gaps = 10/197 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           LE   +P   +   A   + D+ R +  V    +    +  V      ++    I  P V
Sbjct: 654 LEAAGVPVIGTSPDAIDRAEDRERFQHAVDRLKLKQPANATVTTIEMAVEKAKEIGYPLV 713

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  +  +      + S ++   +L++ ++ D +E+    + D  + 
Sbjct: 714 VRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDDAVEVDVDAICDGEMV 773

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           +    +   +    +    S +S   LPA  +  +I   +++        +  RG+    
Sbjct: 774 LIGGIMEHIE----QAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRGLMNVQ 829

Query: 248 FLFDPLSRKVFWLEINV 264
           F     + +V+ +E+N 
Sbjct: 830 FAV--KNNEVYLIEVNP 844


>gi|170680299|ref|YP_001742150.1| carbamoyl phosphate synthase large subunit [Escherichia coli
           SMS-3-5]
 gi|170518017|gb|ACB16195.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli
           SMS-3-5]
          Length = 1073

 Score = 71.7 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 97/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D +              V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +    Q +LE   +    +   A   + D+ R    +   G+    S +
Sbjct: 89  TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGI 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     +     +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHTMEEALAVAAEVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + +   +   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIEN----FDAMGIHTGDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RNASMAVLREIGVETGGSNVQFAVNPKNGRLIVIEMNP 302



 Score = 60.5 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 29/197 (14%), Positives = 74/197 (37%), Gaps = 10/197 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           LE   +P   +   A   + D+ R +  V    +    +  V      ++    I  P V
Sbjct: 654 LEAAGVPVIGTSPDAIDRAEDRERFQHAVERLKLKQPANATVTTIEMAVEKAKEIGYPLV 713

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  +  +      + S ++   +L++ ++ D +E+    + D  + 
Sbjct: 714 VRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDDAVEVDVDAICDGEMV 773

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           +    +   +    +    S +S   LPA  +  +I   +++        +  RG+    
Sbjct: 774 LIGGIMEHIE----QAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRGLMNVQ 829

Query: 248 FLFDPLSRKVFWLEINV 264
           F     + +V+ +E+N 
Sbjct: 830 FAV--KNNEVYLIEVNP 844


>gi|162139870|ref|YP_746109.2| carbamoyl phosphate synthase large subunit [Granulibacter
           bethesdensis CGDNIH1]
          Length = 1092

 Score = 71.7 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 49/278 (17%), Positives = 98/278 (35%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D D              V  ++A  KPD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPDLADATYIEPITPDVVERIIAKEKPDAILP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +Q      LE   +    +       + D+++ +  +   G+    S++
Sbjct: 89  TMGGQTALNTAMQLHASGALERHGVELIGAKADVIDRAEDRLKFRDAMDEIGIESPRSVI 148

Query: 113 VNRFTMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +      + L  +  P VI+P       G  +    +     +      +   ++LIE+
Sbjct: 149 AHTLEEAREGLAHVGLPAVIRPSFTLGGTGGGIAYNKEEFEQIVTSGLDASPTTEVLIEE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPA-KIPLDIYKEV 227
            V G  E    V+ D++ +   I   ++ D           +S  V PA  +    Y+ +
Sbjct: 209 SVLGWKEYEMEVVRDSADNCIIICSIENIDPMGVHT----GDSVTVAPALTLTDREYQRM 264

Query: 228 QRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P   ++  +E+N 
Sbjct: 265 RDASIACLRKIGVDTGGSNVQFGVNPADGRMVVIEMNP 302



 Score = 53.6 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 43/289 (14%), Positives = 97/289 (33%), Gaps = 38/289 (13%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQA----- 70
           AL +AGF+   +         D D S  L    L  +   N++     + G V       
Sbjct: 596 ALREAGFETIMVNCNPETVSTDYDTSDRLYFEPLTAEDVINLIR-REQQSGTVLGCIVQY 654

Query: 71  ----------ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
                      L    IP   + + A   + D+ R + +++   +    + +        
Sbjct: 655 GGQTPLKLSHALSRAGIPILGTSVDAIDAAEDRERFQALLNGLSLLQPENGIARSAQEAE 714

Query: 121 Q--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIEL 177
                I  P VI+P        + ++     +   + ++   +  + +LI++Y+ D IE+
Sbjct: 715 AITARIGYPVVIRPSYVLGGRAMEIVYDHAGLNRYMREAVRVSGDNPVLIDRYLNDAIEV 774

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
               + D         +   +       +S  ++  + P  +   +  E++       + 
Sbjct: 775 DVDCIADGERVYVAGVMEHIEEAGI---HSGDSACSLPPYSLSPALVDELRAQTEALARG 831

Query: 238 IGCRGISRSDF-LFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGY 283
           +   G+    F +        +++ LE+N +   T     P +A   G 
Sbjct: 832 LQVIGLMNVQFAIKREADGSDRIYVLEVNPRASRT----VPFVAKATGV 876


>gi|94311131|ref|YP_584341.1| carbamoyl phosphate synthase large subunit [Cupriavidus
           metallidurans CH34]
 gi|93354983|gb|ABF09072.1| carbamoyl-phosphate synthase large subunit [Cupriavidus
           metallidurans CH34]
          Length = 1082

 Score = 71.7 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 31/222 (13%), Positives = 83/222 (37%), Gaps = 12/222 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYV 129
           LE   +P   +       + D+ R ++++   G+   P+               I  P V
Sbjct: 658 LEANGVPIIGTSPDMIDAAEDRERFQKLLQDLGLRQPPNRTARAEDEALRLAEEIGYPLV 717

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++ + + +   + ++   ++   +L+++++ D IE     + D +  
Sbjct: 718 VRPSYVLGGRAMEIVHEPRDLERYMREAVKVSNDSPVLLDRFLNDAIECDVDALCDGTRV 777

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                +   +       +S  ++  + P  +      E++R      +A+   G+    F
Sbjct: 778 FIGGVMEHIEQAGV---HSGDSACSLPPYSLSQATVDELKRQTAAMAKALNVVGLMNVQF 834

Query: 249 LFDPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
                + +  V+ LE+N +   T     P ++   G S  ++
Sbjct: 835 AIQQRNGEDIVYVLEVNPRASRT----VPYVSKATGLSLAKI 872



 Score = 63.2 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 49/285 (17%), Positives = 95/285 (33%), Gaps = 42/285 (14%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + GFKV  +              DV          V  ++   +PD    
Sbjct: 29  SGAQACKALREEGFKVILVNSNPATIMTDPNTADVTYIEPITWEVVERIIEKERPDAILP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G    +  +      +L+  ++    +   A   + D+ + K  ++  G+    S  
Sbjct: 89  TMGGQTALNCALDLHRHGVLDKYKVELIGASPEAIDKAEDRQKFKDAMTKIGLGSAKSGI 148

Query: 111 -------ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
                  + V             P VI+P       G  +    +       +    +  
Sbjct: 149 AHSMDEAVAVQSRIAQETGTAGYPIVIRPSFTLGGTGGGIAYNREEFEEICKRGLDLSPT 208

Query: 164 DQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPAK-IP 220
            +LLIE+ + G  E    V+ D + +   I   ++ D           +S  V PA+ + 
Sbjct: 209 RELLIEESLLGWKEYEMEVVRDKADNCIIICSIENLDPMGIHT----GDSITVAPAQTLT 264

Query: 221 LDIYKEVQRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
              Y+ ++  +    + IG   G S   F  +P   ++  +E+N 
Sbjct: 265 DKEYQILRNASLAVLREIGVDTGGSNVQFSINPTDGRMIVIEMNP 309


>gi|16803397|ref|NP_464882.1| acetyl-CoA carboxylase biotin carboxylase subunit [Listeria
           monocytogenes EGD-e]
 gi|47095940|ref|ZP_00233543.1| acetyl-CoA carboxylase, biotin carboxylase [Listeria monocytogenes
           str. 1/2a F6854]
 gi|224499937|ref|ZP_03668286.1| acetyl-CoA carboxylase biotin carboxylase subunit [Listeria
           monocytogenes Finland 1988]
 gi|224501700|ref|ZP_03670007.1| acetyl-CoA carboxylase biotin carboxylase subunit [Listeria
           monocytogenes FSL R2-561]
 gi|254827618|ref|ZP_05232305.1| acetyl-CoA carboxylase [Listeria monocytogenes FSL N3-165]
 gi|254829886|ref|ZP_05234541.1| acetyl-CoA carboxylase biotin carboxylase subunit [Listeria
           monocytogenes 10403S]
 gi|254898478|ref|ZP_05258402.1| acetyl-CoA carboxylase biotin carboxylase subunit [Listeria
           monocytogenes J0161]
 gi|254912031|ref|ZP_05262043.1| acetyl-CoA carboxylase [Listeria monocytogenes J2818]
 gi|254936358|ref|ZP_05268055.1| acetyl-CoA carboxylase [Listeria monocytogenes F6900]
 gi|284801742|ref|YP_003413607.1| acetyl-CoA carboxylase biotin carboxylase subunit [Listeria
           monocytogenes 08-5578]
 gi|284994884|ref|YP_003416652.1| acetyl-CoA carboxylase biotin carboxylase subunit [Listeria
           monocytogenes 08-5923]
 gi|16410773|emb|CAC99435.1| acetyl-CoA carboxylase subunit (biotin carboxylase subunit)
           [Listeria monocytogenes EGD-e]
 gi|47015686|gb|EAL06616.1| acetyl-CoA carboxylase, biotin carboxylase [Listeria monocytogenes
           str. 1/2a F6854]
 gi|258599996|gb|EEW13321.1| acetyl-CoA carboxylase [Listeria monocytogenes FSL N3-165]
 gi|258608949|gb|EEW21557.1| acetyl-CoA carboxylase [Listeria monocytogenes F6900]
 gi|284057304|gb|ADB68245.1| acetyl-CoA carboxylase biotin carboxylase subunit [Listeria
           monocytogenes 08-5578]
 gi|284060351|gb|ADB71290.1| acetyl-CoA carboxylase biotin carboxylase subunit [Listeria
           monocytogenes 08-5923]
 gi|293589997|gb|EFF98331.1| acetyl-CoA carboxylase [Listeria monocytogenes J2818]
          Length = 454

 Score = 71.7 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 81/220 (36%), Gaps = 16/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     + E   I +      A +    K  +++ +   GVP+ P    
Sbjct: 77  AIHPGYGFLAENADFAELCEDCNITFIGPSASAISQMGTKDVARETMRKAGVPIVPGSQG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGDQ 165
            +            I  P +IK   GG   GI V + ++ +   +     ++ +      
Sbjct: 137 IVADVEDGKKIAKKIGYPVIIKATAGGGGKGIRVAENEEKLISGIHTTQQEAEAAFGDPG 196

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+Y+     +   V+ D   +V  +            K    + +   PA I     
Sbjct: 197 VYLEKYIQDFRHVEIQVLADNHGNVIHLGERDCSIQRRLQKLIEESPS---PA-IDEKTR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +++ + A  A +A+   G    +F++D      +++E+N 
Sbjct: 253 QKMGKAAVKAAKAVNYSGAGTIEFIYDHHENNFYFMEMNT 292


>gi|332969172|gb|EGK08204.1| acetyl-CoA carboxylase, biotin carboxylase [Kingella kingae ATCC
           23330]
          Length = 453

 Score = 71.7 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 79/222 (35%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+      +E     +         L  DK+ +K  + + GVP  P    
Sbjct: 77  AIHPGYGFLAENANFAEQVEKSGFIFIGPKADTIRLMGDKVSAKHAMIAAGVPCVPGSDG 136

Query: 111 -ILVNRFT-MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
            +  N    +     +  P +IK   GG   G+ V++K + +   +     ++ +     
Sbjct: 137 ALPDNPDEILKIADKVGFPVIIKASGGGGGRGMRVVEKKEDLLKSVEMTKAEAEAAFGNP 196

Query: 165 QLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+++     +   V+ D   +   +            K          PA  I   
Sbjct: 197 MVYMERFLQRPRHVEIQVLADEHGNAIYLGERDCSMQRRHQK-----IIEEAPAPFITPT 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +++      A + IG RG    +FL+     + F++E+N 
Sbjct: 252 EREKIGTACADACKRIGYRGAGTFEFLY--EDGEFFFIEMNT 291


>gi|324503941|gb|ADY41700.1| Propionyl-CoA carboxylase alpha chain [Ascaris suum]
          Length = 743

 Score = 71.7 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 41/220 (18%), Positives = 80/220 (36%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+    A LE     +      A     DK+ SK++ +   V + P    
Sbjct: 136 AVHPGYGFLSENTTFAAQLEEAGAKFVGPNSKAILAMGDKIHSKRIATEARVNMIPGYDG 195

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGDQ 165
            I      +   + I  P +IK   GG   G+ +   D+       L   ++ S    D+
Sbjct: 196 EINDEEECVKVANDIGYPVMIKASAGGGGKGMRIAWNDKEARDGYRLSKQEAKSSFGDDR 255

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           +L+E+++D    +   V+ D   +   +   +        K           + +  ++ 
Sbjct: 256 MLVEKFIDNPRHIEMQVLCDKHGNAIWLNERECSIQRRNQK----VIEEAPSSFVDPEMR 311

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K++   A     A+G       +FL D      ++LE+N 
Sbjct: 312 KKMGAQATQLALAVGYDSAGTVEFLVDSKKN-FYFLEMNT 350


>gi|324112566|gb|EGC06543.1| carbamoyl-phosphate synthase [Escherichia fergusonii B253]
 gi|325495963|gb|EGC93822.1| carbamoyl phosphate synthase large subunit [Escherichia fergusonii
           ECD227]
          Length = 1074

 Score = 71.7 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 97/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D +              V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +    Q +LE   +    +   A   + D+ R    +   G+    S +
Sbjct: 89  TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGI 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     +     +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHTMEEALAVAAEVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + +   +   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIEN----FDAMGIHTGDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RNASMAVLREIGVETGGSNVQFAVNPKNGRLIVIEMNP 302



 Score = 60.1 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 30/197 (15%), Positives = 74/197 (37%), Gaps = 10/197 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYV 129
           LE   +P   +   A   + D+ R +  V    +    +  V    M  +    I  P V
Sbjct: 654 LEAAGVPVIGTSPDAIDRAEDRERFQHAVDRLKLKQPANATVTAIEMAVEKAKEIGYPLV 713

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  +  +      + S ++   +L++ ++ D +E+    + D  + 
Sbjct: 714 VRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDDAVEVDVDAICDGEMV 773

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           +    +   +    +    S +S   LPA  +  +I   +++        +  RG+    
Sbjct: 774 LIGGIMEHIE----QAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRGLMNVQ 829

Query: 248 FLFDPLSRKVFWLEINV 264
           F     + +V+ +E+N 
Sbjct: 830 FAV--KNNEVYLIEVNP 844


>gi|320197524|gb|EFW72138.1| Carbamoyl-phosphate synthase large chain [Escherichia coli
           WV_060327]
          Length = 1073

 Score = 71.7 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 97/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D +              V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +    Q +LE   +    +   A   + D+ R    +   G+    S +
Sbjct: 89  TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGI 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     +     +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHSMEEALAVAAEVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + +   +   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIEN----FDAMGIHTGDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RNASMAVLREIGVETGGSNVQFAVNPKNGRLIVIEMNP 302



 Score = 60.5 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 29/197 (14%), Positives = 74/197 (37%), Gaps = 10/197 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           LE   +P   +   A   + D+ R +  V    +    +  V      ++    I  P V
Sbjct: 654 LEAAGVPVIGTSPDAIDRAEDRERFQHAVERLKLKQPANATVTTIEMAVEKAKEIGYPLV 713

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  +  +      + S ++   +L++ ++ D +E+    + D  + 
Sbjct: 714 VRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDDAVEVDVDAICDGEMV 773

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           +    +   +    +    S +S   LPA  +  +I   +++        +  RG+    
Sbjct: 774 LIGGIMEHIE----QAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRGLMNVQ 829

Query: 248 FLFDPLSRKVFWLEINV 264
           F     + +V+ +E+N 
Sbjct: 830 FAV--KNNEVYLIEVNP 844


>gi|331645139|ref|ZP_08346250.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli M605]
 gi|281177246|dbj|BAI53576.1| carbamoyl-phosphate synthase large subunit [Escherichia coli SE15]
 gi|330909882|gb|EGH38392.1| carbamoyl-phosphate synthase large chain [Escherichia coli AA86]
 gi|331045896|gb|EGI18015.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli M605]
          Length = 1073

 Score = 71.7 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 97/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D +              V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +    Q +LE   +    +   A   + D+ R    +   G+    S +
Sbjct: 89  TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGI 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     +     +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHSMEEALAVAAEVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + +   +   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIEN----FDAMGIHTGDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RNASMAVLREIGVETGGSNVQFAVNPKNGRLIVIEMNP 302



 Score = 59.8 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 29/197 (14%), Positives = 74/197 (37%), Gaps = 10/197 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           LE   +P   +   A   + D+ R +  V    +    +  V      ++    I  P V
Sbjct: 654 LEAAGVPVIGTSPDAIDRAEDRERFQHAVDRLKLKQPANATVTTIEMAVEKAKEIGYPLV 713

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  +  +      + S ++   +L++ ++ D +E+    + D  + 
Sbjct: 714 VRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDDAVEVDVDAICDGEMV 773

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           +    +   +    +    S +S   LPA  +  +I   +++        +  RG+    
Sbjct: 774 LIGGIMEHIE----QAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRGLMNVQ 829

Query: 248 FLFDPLSRKVFWLEINV 264
           F     + +V+ +E+N 
Sbjct: 830 FAV--KNNEVYLIEVNP 844


>gi|218547480|ref|YP_002381271.1| carbamoyl phosphate synthase large subunit [Escherichia fergusonii
           ATCC 35469]
 gi|218355021|emb|CAQ87627.1| carbamoyl-phosphate synthase large subunit [Escherichia fergusonii
           ATCC 35469]
          Length = 1073

 Score = 71.7 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 97/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D +              V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +    Q +LE   +    +   A   + D+ R    +   G+    S +
Sbjct: 89  TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGI 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     +     +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHTMEEALAVAAEVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + +   +   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIEN----FDAMGIHTGDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RNASMAVLREIGVETGGSNVQFAVNPKNGRLIVIEMNP 302



 Score = 60.1 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 30/197 (15%), Positives = 74/197 (37%), Gaps = 10/197 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYV 129
           LE   +P   +   A   + D+ R +  V    +    +  V    M  +    I  P V
Sbjct: 653 LEAAGVPVIGTSPDAIDRAEDRERFQHAVDRLKLKQPANATVTAIEMAVEKAKEIGYPLV 712

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  +  +      + S ++   +L++ ++ D +E+    + D  + 
Sbjct: 713 VRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDDAVEVDVDAICDGEMV 772

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           +    +   +    +    S +S   LPA  +  +I   +++        +  RG+    
Sbjct: 773 LIGGIMEHIE----QAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRGLMNVQ 828

Query: 248 FLFDPLSRKVFWLEINV 264
           F     + +V+ +E+N 
Sbjct: 829 FAV--KNNEVYLIEVNP 843


>gi|215485194|ref|YP_002327625.1| carbamoyl phosphate synthase large subunit [Escherichia coli
           O127:H6 str. E2348/69]
 gi|306815369|ref|ZP_07449518.1| carbamoyl phosphate synthase large subunit [Escherichia coli NC101]
 gi|312966153|ref|ZP_07780379.1| carbamoyl-phosphate synthase large chain [Escherichia coli 2362-75]
 gi|331661071|ref|ZP_08362003.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli
           TA206]
 gi|215263266|emb|CAS07581.1| carbamoyl-phosphate synthase large subunit [Escherichia coli
           O127:H6 str. E2348/69]
 gi|305851031|gb|EFM51486.1| carbamoyl phosphate synthase large subunit [Escherichia coli NC101]
 gi|312289396|gb|EFR17290.1| carbamoyl-phosphate synthase large chain [Escherichia coli 2362-75]
 gi|323190287|gb|EFZ75563.1| carbamoyl-phosphate synthase large chain [Escherichia coli RN587/1]
 gi|324008377|gb|EGB77596.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli MS
           57-2]
 gi|331052113|gb|EGI24152.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli
           TA206]
          Length = 1073

 Score = 71.7 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 97/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D +              V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +    Q +LE   +    +   A   + D+ R    +   G+    S +
Sbjct: 89  TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGI 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     +     +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHSMEEALAVAAEVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + +   +   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIEN----FDAMGIHTGDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RNASMAVLREIGVETGGSNVQFAVNPKNGRLIVIEMNP 302



 Score = 60.5 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 29/197 (14%), Positives = 74/197 (37%), Gaps = 10/197 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           LE   +P   +   A   + D+ R +  V    +    +  V      ++    I  P V
Sbjct: 654 LEAAGVPVIGTSPDAIDRAEDRERFQHAVERLKLKQPANATVTTIEMAVEKAKEIGYPLV 713

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  +  +      + S ++   +L++ ++ D +E+    + D  + 
Sbjct: 714 VRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDDAVEVDVDAICDGEMV 773

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           +    +   +    +    S +S   LPA  +  +I   +++        +  RG+    
Sbjct: 774 LIGGIMEHIE----QAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRGLMNVQ 829

Query: 248 FLFDPLSRKVFWLEINV 264
           F     + +V+ +E+N 
Sbjct: 830 FAV--KNNEVYLIEVNP 844


>gi|156935438|ref|YP_001439354.1| carbamoyl phosphate synthase large subunit [Cronobacter sakazakii
           ATCC BAA-894]
 gi|156533692|gb|ABU78518.1| hypothetical protein ESA_03297 [Cronobacter sakazakii ATCC BAA-894]
          Length = 1074

 Score = 71.7 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 97/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D +              V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +    Q +LE   +    +   A   + D+ R    +   G+    S +
Sbjct: 89  TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLDTARSGI 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     +     +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHNMEEALAVAADVGYPCIIRPSFTMGGTGGGIAYNREEFEEICARGLDLSPTKELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + +   +   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIEN----FDAMGIHTGDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RNASMAVLREIGVETGGSNVQFAVNPKNGRLIVIEMNP 302



 Score = 62.1 bits (150), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 30/197 (15%), Positives = 75/197 (38%), Gaps = 10/197 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           LE   +P   +   A   + D+ R +Q V    +    +  V      ++    I  P V
Sbjct: 654 LEAAGVPVIGTSPDAIDRAEDRERFQQAVDRLKLKQPANATVTAIEQAVEKAKEIGYPLV 713

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  +  +      + S ++   +L+++++ D +E+    + D  + 
Sbjct: 714 VRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDRFLDDAVEVDVDAICDGEMV 773

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           +    +   +    +    S +S   LPA  +  +I   +++        +  RG+    
Sbjct: 774 LIGGIMEHIE----QAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRGLMNVQ 829

Query: 248 FLFDPLSRKVFWLEINV 264
           F       +V+ +E+N 
Sbjct: 830 FAV--KDNEVYLIEVNP 844


>gi|194367421|ref|YP_002030031.1| acetyl-CoA carboxylase biotin carboxylase subunit [Stenotrophomonas
           maltophilia R551-3]
 gi|194350225|gb|ACF53348.1| acetyl-CoA carboxylase, biotin carboxylase [Stenotrophomonas
           maltophilia R551-3]
          Length = 455

 Score = 71.7 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 38/225 (16%), Positives = 82/225 (36%), Gaps = 27/225 (12%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+      +E     +         +  DK+ + + + S GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAERVEESGFIFIGPKADTIRMMGDKVEAIRAMKSAGVPCVPGSGG 136

Query: 111 -----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWN 161
                I+ N         I  P +IK   GG   G+ V+  + S+   +     ++ +  
Sbjct: 137 PLGDDIVAN---TKIAREIGYPVIIKAAGGGGGRGMRVVHAEASLKTSIETTKSEAKAAF 193

Query: 162 HGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-I 219
              ++ +E++++    +   V+ D   +   +            K          PA  I
Sbjct: 194 GNGEVYMEKFLENPRHVEIQVLADGQGNAIHLGERDCSMQRRHQK-----VVEEAPAPGI 248

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +  +++ ++   A   IG RG    +FL+     + +++E+N 
Sbjct: 249 SAEQREQIGKVCTEACVRIGYRGAGTFEFLY--EDGRFYFIEMNT 291


>gi|113953868|ref|YP_732122.1| phosphoribosylglycinamide formyltransferase 2 [Synechococcus sp.
           CC9311]
 gi|113881219|gb|ABI46177.1| phosphoribosylglycinamide formyltransferase 2 [Synechococcus sp.
           CC9311]
          Length = 393

 Score = 71.7 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 39/231 (16%), Positives = 87/231 (37%), Gaps = 16/231 (6%)

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           ++  V+   +PD+    +     +   +QA LE   I        A+A++M++ R + + 
Sbjct: 63  ALKTVVNKHQPDVLIPEIEALAVD--ALQA-LEDTGI-CVIPTARATAVTMNRDRIRNLA 118

Query: 101 SS-CGVPVCPSILVNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD--LL 155
           +   G+        +       +   +  P V+KP+   S  G  V+     +     + 
Sbjct: 119 AGELGLRTARFAYASDAQELQRAAAPLGWPVVVKPVMSSSGKGQSVVHSAAELDKAWEIA 178

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215
            + +     Q+++E+++D  +L   ++     D T +  P          Y         
Sbjct: 179 MAGARGSSAQVIVEEFLD-FDLEITLLTIRQHDGTTLFCPPIGHQQANGDYQCSW----Q 233

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
           PA I     ++ Q +A      +G  G+   +F       +V + E++ +P
Sbjct: 234 PASISPSQLQQAQTMARTVTDNLGGAGLFGVEFFL--CGDEVVFSELSPRP 282


>gi|110640245|ref|YP_667973.1| carbamoyl phosphate synthase large subunit [Escherichia coli 536]
 gi|191174098|ref|ZP_03035612.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli F11]
 gi|110341837|gb|ABG68074.1| carbamoyl-phosphate synthase large chain [Escherichia coli 536]
 gi|190905592|gb|EDV65217.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli F11]
          Length = 1072

 Score = 71.7 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 97/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D +              V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +    Q +LE   +    +   A   + D+ R    +   G+    S +
Sbjct: 89  TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGI 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     +     +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHSMEEALAVAAEVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + +   +   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIEN----FDAMGIHTGDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RNASMAVLREIGVETGGSNVQFAVNPKNGRLIVIEMNP 302



 Score = 60.5 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 29/197 (14%), Positives = 74/197 (37%), Gaps = 10/197 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           LE   +P   +   A   + D+ R +  V    +    +  V      ++    I  P V
Sbjct: 653 LEAAGVPVIGTSPDAIDRAEDRERFQHAVERLKLKQPANATVTTIEMAVEKAKEIGYPLV 712

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  +  +      + S ++   +L++ ++ D +E+    + D  + 
Sbjct: 713 VRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDDAVEVDVDAICDGEMV 772

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           +    +   +    +    S +S   LPA  +  +I   +++        +  RG+    
Sbjct: 773 LIGGIMEHIE----QAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRGLMNVQ 828

Query: 248 FLFDPLSRKVFWLEINV 264
           F     + +V+ +E+N 
Sbjct: 829 FAV--KNNEVYLIEVNP 843


>gi|290995973|ref|XP_002680557.1| predicted protein [Naegleria gruberi]
 gi|284094178|gb|EFC47813.1| predicted protein [Naegleria gruberi]
          Length = 422

 Score = 71.3 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 45/286 (15%), Positives = 100/286 (34%), Gaps = 61/286 (21%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV-NRFTMDSQHLISP---- 126
           L+L  + +            DK  + Q++    +PV  S++V  R  ++   L+      
Sbjct: 135 LDLRGVEFVGQHPKLVQQFDDKFDTNQMLKKENLPVANSLIVSTREKLEEMKLLGFYKEG 194

Query: 127 -------------------PYVIKPLKGGSSLGIIVIKKDQSIPL----------DLLQS 157
                              P +IKP++G  S G+  +    S              +   
Sbjct: 195 IKILEELSEESLRENGIEFPLIIKPVRGRGSEGVEKVDNFDSFVEKSTQLINQTIQVNNK 254

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK-SDFYSYELKYSSLNSTHVLP 216
               +G   ++E++++G ELT  VM   +  + +I   + S+ ++        +   V P
Sbjct: 255 PVPKYGYYFIVEEFLNGDELTLTVMPPGNYIMYDIQEMEFSNHWALPPVKRFNHQNGVAP 314

Query: 217 AK---------------IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR--KVFW 259
                               +  +++ +    A + +  +   R D      S   +   
Sbjct: 315 YNGIVAVVNNSVVLKDFDSDEAIQKIIKACEKAAELVQAKAPIRIDCRSHQTSDSVEFKM 374

Query: 260 LEINVQPGMT---------PVSIFPEMAAYAGYSFRELLLWMVEDA 296
            ++N++P MT           S+    A   G+++++LLL ++  +
Sbjct: 375 FDLNMKPNMTGPGRDNRDNQDSLSAIAAREIGWNYQDLLLMILNQS 420


>gi|221482403|gb|EEE20751.1| acetyl-CoA carboxylase, putative [Toxoplasma gondii GT1]
          Length = 2252

 Score = 71.3 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 42/242 (17%), Positives = 85/242 (35%), Gaps = 29/242 (11%)

Query: 48  HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV 107
             K D  +    G+  E+  +   L  L I +        A   DK+ +  +  + GVP 
Sbjct: 72  QEKVDAVWPG-WGHASENPNLPRRLSELGITFIGPSATVMAALGDKIAANILAQTAGVPS 130

Query: 108 CPSI------------LVNRFTMDS------------QHLISPPYVIKPLKGGSSLGIIV 143
            P               + R   D                I  P +IK  +GG   GI +
Sbjct: 131 IPWSGDSLKATLDSTGAIPRDIFDQATVKSVEECEKVADRIGYPMMIKASEGGGGKGIRM 190

Query: 144 IKKDQSIPLDLLQSSSWNHGDQL-LIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSY 202
           + + + +     Q  +   G  + +++       +   ++GD       ++       S 
Sbjct: 191 VDRKEQVRGAYEQVVAEVPGSPVFMMQLCTAARHIEVQIVGDEDGQAVALS---GRDCST 247

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
           + ++  +         +P    KE+++ A    Q++G  G    ++L++    K F+LE+
Sbjct: 248 QRRFQKIFEEAPPTTVVPPHTMKEMEKAAQRLTQSLGYVGAGTVEYLYNRKDDKFFFLEL 307

Query: 263 NV 264
           N 
Sbjct: 308 NP 309


>gi|254506522|ref|ZP_05118664.1| acetyl-CoA carboxylase, biotin carboxylase [Vibrio parahaemolyticus
           16]
 gi|219550696|gb|EED27679.1| acetyl-CoA carboxylase, biotin carboxylase [Vibrio parahaemolyticus
           16]
          Length = 447

 Score = 71.3 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 36/222 (16%), Positives = 81/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         +  DK+ +   +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAEQVERSGFIFVGPKANTIRMMGDKVSAITAMKKAGVPCVPGSDG 136

Query: 112 LVNRFTMDSQH---LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
            ++   + ++     I  P +IK   GG   G+ V++ +  +   +     ++ +  + D
Sbjct: 137 PLDNDEVKNKAHAKRIGYPVIIKASGGGGGRGMRVVRSEAELVEAIAMTRAEAKAAFNND 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E++++    +   V+ D       +            K          PA  I  +
Sbjct: 197 MVYMEKFLENPRHVEVQVIADGQGGAIHLGERDCSMQRRHQK-----VVEEAPAPGITEE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + K +      A   IG RG    +FL+   + + +++E+N 
Sbjct: 252 MRKYIGERCTRACLEIGYRGAGTFEFLY--ENGEFYFIEMNT 291


>gi|195382416|ref|XP_002049926.1| GJ20478 [Drosophila virilis]
 gi|194144723|gb|EDW61119.1| GJ20478 [Drosophila virilis]
          Length = 1197

 Score = 71.3 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 30/205 (14%), Positives = 78/205 (38%), Gaps = 17/205 (8%)

Query: 69  QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLI 124
           QA+++   + +            DK+ ++      GVP+ P     +      +      
Sbjct: 131 QAVID-AGLRFIGPSPKVVQNMGDKVAARVAAIEAGVPIVPGTDGPVTSKEEALSFCQKH 189

Query: 125 SPPYVIKPLKGGSSLGIIVI----KKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTC 179
             P + K   GG   G+ V+    + +++      ++ +      + IE++++    +  
Sbjct: 190 GLPVIFKAAYGGGGRGMRVVRKMEEVEENFERASSEAKAAFGNGAMFIEKFIERPRHIEV 249

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAI 238
            ++GD + +V  +           ++        + PA ++P++I  ++   A    + +
Sbjct: 250 QLLGDKAGNVVHLYE-----RDCSVQRRHQKVVEIAPAPRLPIEIRDKMTEAAVRLARHV 304

Query: 239 GCRGISRSDFLFDPLSRKVFWLEIN 263
           G       +FL D      +++E+N
Sbjct: 305 GYENAGTVEFLCDESGN-FYFIEVN 328


>gi|26245956|ref|NP_751995.1| carbamoyl phosphate synthase large subunit [Escherichia coli
           CFT073]
 gi|227885069|ref|ZP_04002874.1| carbamoyl phosphate synthase large subunit [Escherichia coli 83972]
 gi|300981005|ref|ZP_07175282.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli MS
           45-1]
 gi|301048415|ref|ZP_07195442.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli MS
           185-1]
 gi|33301028|sp|Q8FLB0|CARB_ECOL6 RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|26106353|gb|AAN78539.1|AE016755_39 Carbamoyl-phosphate synthase large chain [Escherichia coli CFT073]
 gi|222031865|emb|CAP74603.1| Carbamoyl-phosphate synthase large chain [Escherichia coli LF82]
 gi|227837898|gb|EEJ48364.1| carbamoyl phosphate synthase large subunit [Escherichia coli 83972]
 gi|300299708|gb|EFJ56093.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli MS
           185-1]
 gi|300409041|gb|EFJ92579.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli MS
           45-1]
 gi|307551877|gb|ADN44652.1| carbamoyl phosphate synthase, large subunit [Escherichia coli ABU
           83972]
 gi|312944639|gb|ADR25466.1| carbamoyl phosphate synthase large subunit [Escherichia coli O83:H1
           str. NRG 857C]
          Length = 1073

 Score = 71.3 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 97/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D +              V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +    Q +LE   +    +   A   + D+ R    +   G+    S +
Sbjct: 89  TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGI 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     +     +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHSMEEALAVAAEVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + +   +   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIEN----FDAMGIHTGDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RNASMAVLREIGVETGGSNVQFAVNPKNGRLIVIEMNP 302



 Score = 60.5 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 29/197 (14%), Positives = 74/197 (37%), Gaps = 10/197 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           LE   +P   +   A   + D+ R +  V    +    +  V      ++    I  P V
Sbjct: 654 LEAAGVPVIGTSPDAIDRAEDRERFQHAVERLKLKQPANATVTTIEMAVEKAKEIGYPLV 713

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  +  +      + S ++   +L++ ++ D +E+    + D  + 
Sbjct: 714 VRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDDAVEVDVDAICDGEVV 773

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           +    +   +    +    S +S   LPA  +  +I   +++        +  RG+    
Sbjct: 774 LIGGIMEHIE----QAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRGLMNVQ 829

Query: 248 FLFDPLSRKVFWLEINV 264
           F     + +V+ +E+N 
Sbjct: 830 FAV--KNNEVYLIEVNP 844


>gi|312136984|ref|YP_004004321.1| hypothetical protein Mfer_0760 [Methanothermus fervidus DSM 2088]
 gi|311224703|gb|ADP77559.1| protein of unknown function DUF201 [Methanothermus fervidus DSM
           2088]
          Length = 367

 Score = 71.3 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 44/220 (20%), Positives = 92/220 (41%), Gaps = 17/220 (7%)

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLK 134
             IP   S + A+++++DK ++K       +      ++     +    ++ P V+K  K
Sbjct: 89  YGIPVVASNLHATSIAVDKFKTKIFFKKMNIRTPKYKII----KEPPSEVTKPVVLKNKK 144

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194
           G +  G++V      I   L +         +L+E++++GIE++  V+      +  + V
Sbjct: 145 GQAGTGVVVTNSKDEITEYLKK------YGVVLMEEFINGIEISVEVLRWEGKSLALVVV 198

Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
            K    + E  +         PA+I     ++V   + +   ++   G +  D +FD   
Sbjct: 199 DKGRT-TLEAVHPLYKIKK-APAQIKGLDNEKVLLFSRMIVNSLNAEGNTDIDMIFDEKL 256

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGY-SFRELLLWMV 293
           RKV+ +E+N +P  T        AA  G     +L+   +
Sbjct: 257 RKVYAIELNTRPSGTRY----ISAAATGIHPLHQLVDMAI 292


>gi|237807862|ref|YP_002892302.1| phosphoribosylglycinamide formyltransferase 2 [Tolumonas auensis
           DSM 9187]
 gi|259547265|sp|C4LDC0|PURT_TOLAT RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|237500123|gb|ACQ92716.1| phosphoribosylglycinamide formyltransferase 2 [Tolumonas auensis
           DSM 9187]
          Length = 394

 Score = 71.3 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 48/281 (17%), Positives = 97/281 (34%), Gaps = 46/281 (16%)

Query: 19  GKACASALEDAGFKVSQID--------------------VDRSVGLVLAHLKPDLAFNVL 58
           GK  A  L+  G +V  +D                       ++  ++   KP      +
Sbjct: 24  GKEVAIELQRLGVEVIAVDRYANAPAMQVAHRSHVISMLDGEALSQLVQQEKPHFIIPEI 83

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKM-RSKQVVSSCGVPVCPSILVNRFT 117
                E   +Q  LE           LA+ L+MD+    +    +  +P  P        
Sbjct: 84  EAIATE--TLQK-LEQEGFNVV-PTALATRLTMDREGIRRLAAETLKLPTSPYFFAETEA 139

Query: 118 MDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD--LLQSSSWNHGDQLLIEQYVD 173
              Q    I  P VIKP+   S  G  V++K   + +     Q        ++++E +V 
Sbjct: 140 EYQQAVEQIGFPCVIKPVMSSSGKGQSVVRKADQVAVAWQYAQEGGRAGRGRVIVEGFVP 199

Query: 174 GIELTCGVMGDASLDVTEIAVP---KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
             +    ++  +++D      P   + +   Y   +         P  +   + ++ Q +
Sbjct: 200 -FDYEITLLTVSAVDGIHFCAPIGHRQEDGDYRESW--------QPQVMSDALLEKSQHV 250

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP---GM 268
           A    +A+G  G+   +        +V++ E++ +P   GM
Sbjct: 251 AREVVKALGGYGLFGVELFI--KGDEVYFSEVSPRPHDTGM 289


>gi|197287430|ref|YP_002153302.1| biotin carboxylase [Proteus mirabilis HI4320]
 gi|227358308|ref|ZP_03842649.1| biotin carboxylase [Proteus mirabilis ATCC 29906]
 gi|194684917|emb|CAR47087.1| biotin carboxylase [Proteus mirabilis HI4320]
 gi|227161644|gb|EEI46681.1| biotin carboxylase [Proteus mirabilis ATCC 29906]
          Length = 449

 Score = 71.3 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 81/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         L  DK+ + + +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAEQVERSGFIFIGPKAETIRLMGDKVSAIEAMKKAGVPCVPGSDG 136

Query: 112 ---LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
                    ++    I  P +IK   GG   G+ V++ ++ +   +     ++ +    D
Sbjct: 137 PLGNDTAKNIEIAKRIGYPVIIKASGGGGGRGMRVVRSEKDLAQAISMTRAEAKAAFSND 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+Y++    +   VM D   +   +A           K          PA  I  +
Sbjct: 197 MVYMEKYLENPRHVEIQVMADGQGNAIYLAERDCSMQRRHQK-----VVEEAPAPGITPE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           I K +      A   IG RG    +FL+   + + +++E+N 
Sbjct: 252 IRKNIGERCANACIEIGYRGAGTFEFLY--ENGEFYFIEMNT 291


>gi|125718157|ref|YP_001035290.1| carbamoyl phosphate synthase large subunit [Streptococcus sanguinis
           SK36]
 gi|167006451|sp|A3CNI5|CARB_STRSV RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|125498074|gb|ABN44740.1| Carbamoyl-phosphate synthase large chain, putative [Streptococcus
           sanguinis SK36]
          Length = 1059

 Score = 71.3 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 23/224 (10%), Positives = 72/224 (32%), Gaps = 11/224 (4%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYV 129
           L    +    + +     + D+   +Q +    +P  P           ++   I  P +
Sbjct: 646 LSKAGVKILGTQVADLDRAEDRDLFEQALKELDIPQPPGQTATNEEEAVEAARKIGFPVL 705

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           ++P        + +++ +  +   +  +   +    +L++ Y+ G E     + D    +
Sbjct: 706 VRPSYVLGGRAMEIVENEADLRSYMRTAVKASPDHPVLVDSYIVGDECEVDAISDGRQVL 765

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
               +   +       +S  +     P  +   +   +          + C G+    F+
Sbjct: 766 IPGIMEHIERAGV---HSGDSMAAYPPQTLSQKVKDTIADYTKRLALGLNCIGMMNIQFV 822

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
                 +V+ +E+N +   T     P ++        ++   ++
Sbjct: 823 I--KDEQVYVIEVNPRASRT----VPFLSKVTDIPMAQVATRLI 860



 Score = 65.9 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 37/206 (17%), Positives = 78/206 (37%), Gaps = 9/206 (4%)

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147
           + D+   KQ++   G P+  S +VN     ++    I  P +++P       G  +   +
Sbjct: 126 AEDRDLFKQLMEELGQPIPESEIVNTVDEALEFAAGIGYPVIVRPAFTLGGTGGGICSNE 185

Query: 148 QSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
           + +          +   Q LIE+ + G  E+   VM D + +   + V   + +     +
Sbjct: 186 EELQEIAENGLKLSPVTQCLIERSIAGFKEIEYEVMRDGADNA--LVVCNMENFDPVGIH 243

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
           +  +        I    Y+ ++  +    +A+   G        DP S K + +E+N  P
Sbjct: 244 TGDSIVFAPSQTISDYEYQMLRDASLKIIRALKIEGGCNVQLALDPHSFKYYVIEVN--P 301

Query: 267 GMTPVSIFPEMAAYAGYSFRELLLWM 292
            ++  S     +   GY   +L   +
Sbjct: 302 RVSRSS--ALASKATGYPIAKLAAKI 325


>gi|114317126|gb|ABI63186.1| carbamoyl-phosphate synthase large chain [Granulibacter
           bethesdensis CGDNIH1]
          Length = 1101

 Score = 71.3 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 49/278 (17%), Positives = 98/278 (35%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D D              V  ++A  KPD    
Sbjct: 38  SGAQACKALREEGYRVILVNSNPATIMTDPDLADATYIEPITPDVVERIIAKEKPDAILP 97

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +Q      LE   +    +       + D+++ +  +   G+    S++
Sbjct: 98  TMGGQTALNTAMQLHASGALERHGVELIGAKADVIDRAEDRLKFRDAMDEIGIESPRSVI 157

Query: 113 VNRFTMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +      + L  +  P VI+P       G  +    +     +      +   ++LIE+
Sbjct: 158 AHTLEEAREGLAHVGLPAVIRPSFTLGGTGGGIAYNKEEFEQIVTSGLDASPTTEVLIEE 217

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPA-KIPLDIYKEV 227
            V G  E    V+ D++ +   I   ++ D           +S  V PA  +    Y+ +
Sbjct: 218 SVLGWKEYEMEVVRDSADNCIIICSIENIDPMGVHT----GDSVTVAPALTLTDREYQRM 273

Query: 228 QRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P   ++  +E+N 
Sbjct: 274 RDASIACLRKIGVDTGGSNVQFGVNPADGRMVVIEMNP 311



 Score = 53.6 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 43/289 (14%), Positives = 97/289 (33%), Gaps = 38/289 (13%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQA----- 70
           AL +AGF+   +         D D S  L    L  +   N++     + G V       
Sbjct: 605 ALREAGFETIMVNCNPETVSTDYDTSDRLYFEPLTAEDVINLIR-REQQSGTVLGCIVQY 663

Query: 71  ----------ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
                      L    IP   + + A   + D+ R + +++   +    + +        
Sbjct: 664 GGQTPLKLSHALSRAGIPILGTSVDAIDAAEDRERFQALLNGLSLLQPENGIARSAQEAE 723

Query: 121 Q--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIEL 177
                I  P VI+P        + ++     +   + ++   +  + +LI++Y+ D IE+
Sbjct: 724 AITARIGYPVVIRPSYVLGGRAMEIVYDHAGLNRYMREAVRVSGDNPVLIDRYLNDAIEV 783

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
               + D         +   +       +S  ++  + P  +   +  E++       + 
Sbjct: 784 DVDCIADGERVYVAGVMEHIEEAGI---HSGDSACSLPPYSLSPALVDELRAQTEALARG 840

Query: 238 IGCRGISRSDF-LFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGY 283
           +   G+    F +        +++ LE+N +   T     P +A   G 
Sbjct: 841 LQVIGLMNVQFAIKREADGSDRIYVLEVNPRASRT----VPFVAKATGV 885


>gi|91783050|ref|YP_558256.1| putative biotin carboxylase subunit of acetyl-CoA carboxylase
           [Burkholderia xenovorans LB400]
 gi|91687004|gb|ABE30204.1| biotin carboxylase / biotin carboxyl carrier protein [Burkholderia
           xenovorans LB400]
          Length = 681

 Score = 71.3 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 73/220 (33%), Gaps = 16/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E   +        I +             K+ SK++ +  GVP  P    
Sbjct: 77  AIHPGYGFLSESTQLVNRCAEHGIAWIGPRGDVIERMGSKIESKRIAADAGVPCVPGYHG 136

Query: 114 N----RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGDQ 165
           +       ++    I  P +IK   GG   G+  +         L     ++      D+
Sbjct: 137 DNQKLEHLLEQARAIGAPLLIKASAGGGGKGMRRVDDLDDFAAQLSMAKQEALRAFGDDR 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           +LIE+ +     L   + GD   ++  +   +        K            ++   + 
Sbjct: 197 VLIEKLILRPRHLEVQLAGDRHGNLVHLFERECSIQRNYQKVF----EEAPAPRLAPAVR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +++   A     AIG   +   +F+    +   ++LE+N 
Sbjct: 253 EKLLDAALKLGNAIGYDSLGTVEFVLAEDADTPYFLEMNT 292


>gi|1303913|dbj|BAA12569.1| YqhX [Bacillus subtilis]
          Length = 450

 Score = 71.3 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 91/220 (41%), Gaps = 16/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     + E + + +      A +    K  +++ +   GVP+ P    
Sbjct: 77  AIHPGYGFLAENADFAELCEEVNVTFVGPSPDAISKMGTKDVARETMKQAGVPIVPGSQG 136

Query: 111 ILVNRFTMDS-QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
           I+ N     S  + I  P +IK   GG   GI V + ++ +   +     ++++      
Sbjct: 137 IIENVEEAVSLANEIGYPVIIKATAGGGGKGIRVARTEEELINGIKITQQEAATAFRNPG 196

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+Y++    +   V+ D   +   +            K    + +   PA +  +I 
Sbjct: 197 VYIEKYIEDFRHVEIQVLADNYGNTIHLGERDCSIQRRLQKLLEESPS---PA-LDSEIR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +++   A  A +A+G  G    +F++D   ++ +++E+N 
Sbjct: 253 EQMGDAAVKAAKAVGYTGAGTVEFIYDYNEQRYYFMEMNT 292


>gi|330813929|ref|YP_004358168.1| biotin carboxylase of acetyl-CoA carboxylase [Candidatus
           Pelagibacter sp. IMCC9063]
 gi|327487024|gb|AEA81429.1| biotin carboxylase of acetyl-CoA carboxylase [Candidatus
           Pelagibacter sp. IMCC9063]
          Length = 447

 Score = 71.3 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 82/220 (37%), Gaps = 18/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC----P 109
            +H  +G   E+     ILE  +I +            DK+++K++    G+PV      
Sbjct: 77  AIHPGYGFLSENYNFVKILEDHKIKFIGPSSALINKMGDKIQAKKIAKELGLPVIKGSEK 136

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
            +       +  + I  P +IK   GG   G+ +++KD  +  +L     ++  + + D+
Sbjct: 137 GVSEINEAKEIANKIGYPVLIKAAGGGGGKGMKIVEKDSELLENLQIAKNEAKKFFNNDE 196

Query: 166 LLIEQ-YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+ + +   +   ++ D   +   +            K             I     
Sbjct: 197 VFIEKYFKNPRHIEVQILSDGKDNTVHLGERDCTIQRRHQK----VIEESPSPVITAKQR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +++      +   +G  G    +F++     + F+LE+N 
Sbjct: 253 EDLLNTCVQSISQLGYEGAGTLEFIY--EDGEFFFLEMNT 290


>gi|317047518|ref|YP_004115166.1| alpha-L-glutamate ligase, RimK family [Pantoea sp. At-9b]
 gi|316949135|gb|ADU68610.1| alpha-L-glutamate ligase, RimK family [Pantoea sp. At-9b]
          Length = 300

 Score = 71.3 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 59/282 (20%), Positives = 109/282 (38%), Gaps = 47/282 (16%)

Query: 12  REVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGE-----DG 66
           R+ SL S K    A E  G +V  ID       +  ++  + A   +H   GE     D 
Sbjct: 8   RDGSLYSCKRLREAAEARGHQVQIIDP------LSCYMNINPASPAVH-YRGEPLGHFDA 60

Query: 67  LVQAI--------------LELLEIPYTHSGILASALSMDKMRSKQVVSSCGV--PVCPS 110
           ++  I               EL    Y  +  +A   + DK+RS Q+++  G+  PV   
Sbjct: 61  VIPRIGSAITFYGTAVLRQFELCG-SYPLNESVAITRARDKLRSLQLLAREGIDMPVTGF 119

Query: 111 ILVNRFTMDSQHLISP-PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
                 T D   ++   P V+K ++G   +G+++ +  Q+     +  +       +L++
Sbjct: 120 ASSPDDTDDLITMVGGAPLVVKLVEGTQGIGVVLAETRQAAES--VIDAFRGLNAHILVQ 177

Query: 170 QYVD---GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE 226
           +++    G ++ C V+GD  +   E A  + DF S   +          P +I       
Sbjct: 178 EFIKEAQGRDIRCLVIGDEVVAAIERAAKEGDFRSNLHRGGKA-----YPVRITDQE--- 229

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268
            + +A  A   +G       D      +R    +E+N  PG+
Sbjct: 230 -REIAVKAASTLGLEVAG-VD--ILRANRGPLVMEVNASPGL 267


>gi|254522476|ref|ZP_05134531.1| acetyl-CoA carboxylase, biotin carboxylase [Stenotrophomonas sp.
           SKA14]
 gi|219720067|gb|EED38592.1| acetyl-CoA carboxylase, biotin carboxylase [Stenotrophomonas sp.
           SKA14]
          Length = 455

 Score = 71.3 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 38/225 (16%), Positives = 82/225 (36%), Gaps = 27/225 (12%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+      +E     +         +  DK+ + + + S GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAERVEESGFIFIGPKADTIRMMGDKVEAIRAMKSAGVPCVPGSGG 136

Query: 111 -----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWN 161
                I+ N         I  P +IK   GG   G+ V+  + S+   +     ++ +  
Sbjct: 137 PLGEDIVAN---TKIAREIGYPVIIKAAGGGGGRGMRVVHAEASLKTSIETTKSEAKAAF 193

Query: 162 HGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-I 219
              ++ +E++++    +   V+ D   +   +            K          PA  I
Sbjct: 194 GNGEVYMEKFLENPRHVEIQVLADGQGNAIHLGERDCSMQRRHQK-----VVEEAPAPGI 248

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +  +++ ++   A   IG RG    +FL+     + +++E+N 
Sbjct: 249 SAEQREQIGKVCTEACVRIGYRGAGTFEFLY--EDGRFYFIEMNT 291


>gi|152972178|ref|YP_001337324.1| acetyl-CoA carboxylase biotin carboxylase subunit [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
 gi|150957027|gb|ABR79057.1| acetyl-CoA carboxylase [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
          Length = 449

 Score = 71.3 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 42/222 (18%), Positives = 82/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         L  DK+ +   +   GVP  P    
Sbjct: 77  AIHPGYGFLSENANFAEQVERSGFIFIGPKADTIRLMGDKVSAITAMKKAGVPTVPGSDG 136

Query: 112 -LVNRFTMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
            L +    +  H   I  P +IK   GG   G+ V++ D  +   +     ++ +  + D
Sbjct: 137 PLGDDMDANRAHAKRIGYPVIIKASGGGGGRGMRVVRSDAELAQSISMTKAEAKAAFNND 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+Y++    +   V+ D   +   +A           K          PA  I  +
Sbjct: 197 MVYMEKYLENPRHIEIQVLADGQGNAIYLAERDCSMQRRHQK-----VVEEAPAPGITPE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + + +      A   IG RG    +FLF   + + +++E+N 
Sbjct: 252 LRRYIGERCAKACVDIGYRGAGTFEFLF--ENGEFYFIEMNT 291


>gi|329926153|ref|ZP_08280744.1| phosphoribosylaminoimidazole carboxylase, ATPase subunit
           [Paenibacillus sp. HGF5]
 gi|328939427|gb|EGG35781.1| phosphoribosylaminoimidazole carboxylase, ATPase subunit
           [Paenibacillus sp. HGF5]
          Length = 395

 Score = 71.3 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 39/207 (18%), Positives = 84/207 (40%), Gaps = 17/207 (8%)

Query: 65  DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQH 122
           D  V  +LE  E  Y   G      +  ++R K  + + GVPV P   +      + +  
Sbjct: 91  DAGVARLLE--EQSYVPQGSKLLYTTQHRLREKAAIEAAGVPVAPYREITSLEDLLSAAS 148

Query: 123 LISPPYVIKPLKGG-SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
            +  P V+K   GG    G  V++ +  +     + ++   G +L++E++V        V
Sbjct: 149 ELGLPCVLKTATGGYDGKGQAVLRSEDELESAYKELAA--SGTELVLEKFVK-FACEISV 205

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTH--VLPAKIPLDIYKEVQRLAFLAHQAIG 239
           +   +      + P ++           N  H  ++PA++P ++ ++  +LA    + +G
Sbjct: 206 IAARTPSGIVKSFPPAENV------HVNNILHLSIVPARVPSEVKRKACQLAERVAEGLG 259

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQP 266
             G+   +        ++F  E+  +P
Sbjct: 260 AVGLLAVEMFVTE-EGELFVNELAPRP 285


>gi|327474346|gb|EGF19752.1| carbamoyl-phosphate synthase, large subunit [Streptococcus
           sanguinis SK408]
          Length = 1059

 Score = 71.3 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 23/224 (10%), Positives = 72/224 (32%), Gaps = 11/224 (4%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYV 129
           L    +    + +     + D+   +Q +    +P  P           ++   I  P +
Sbjct: 646 LSKAGVKILGTQVADLDRAEDRDLFEQALKELDIPQPPGQTATNEEEAVEAARKIGFPVL 705

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           ++P        + +++ +  +   +  +   +    +L++ Y+ G E     + D    +
Sbjct: 706 VRPSYVLGGRAMEIVENEADLRSYMRTAVKASPDHPVLVDSYIVGDECEVDAISDGRQVL 765

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
               +   +       +S  +     P  +   +   +          + C G+    F+
Sbjct: 766 IPGIMEHIERAGV---HSGDSMAAYPPQTLSKKVKDTIADYTKRLALGLNCIGMMNIQFV 822

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
                 +V+ +E+N +   T     P ++        ++   ++
Sbjct: 823 I--KDEQVYVIEVNPRASRT----VPFLSKVTDIPMAQVATRLI 860



 Score = 65.9 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 37/206 (17%), Positives = 78/206 (37%), Gaps = 9/206 (4%)

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147
           + D+   KQ++   G P+  S +VN     ++    I  P +++P       G  +   +
Sbjct: 126 AEDRDLFKQLMEELGQPIPESEIVNTVDEALEFAAGIGYPVIVRPAFTLGGTGGGICSNE 185

Query: 148 QSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
           + +          +   Q LIE+ + G  E+   VM D + +   + V   + +     +
Sbjct: 186 EELQEIAENGLKLSPVTQCLIERSIAGFKEIEYEVMRDGADNA--LVVCNMENFDPVGIH 243

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
           +  +        I    Y+ ++  +    +A+   G        DP S K + +E+N  P
Sbjct: 244 TGDSIVFAPSQTISDYEYQMLRDASLKIIRALKIEGGCNVQLALDPHSFKYYVIEVN--P 301

Query: 267 GMTPVSIFPEMAAYAGYSFRELLLWM 292
            ++  S     +   GY   +L   +
Sbjct: 302 RVSRSS--ALASKATGYPIAKLAAKI 325


>gi|237748686|ref|ZP_04579166.1| carbamoyl phosphate synthase [Oxalobacter formigenes OXCC13]
 gi|229380048|gb|EEO30139.1| carbamoyl phosphate synthase [Oxalobacter formigenes OXCC13]
          Length = 1076

 Score = 71.3 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 47/278 (16%), Positives = 100/278 (35%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +              DV        + V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYKVILVNSNPATIMTDPETADVTFIEPITWKVVERIIEQERPDAILP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      +LE   +    +   A   + D+ + K+ ++  G+    S +
Sbjct: 89  TMGGQTALNCALDLYRNGVLEKYNVELIGASPEAIDKAEDRAKFKEAMTKIGLSSARSGI 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +      D Q  +  P +I+P       G  +   ++       +    +  ++LLIE+
Sbjct: 149 AHTLEEAWDVQKQLGFPVIIRPSFTLGGTGGGIAYNEEEFETICRRGLEASPTNELLIEE 208

Query: 171 YVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D   + +   ++   D           +S  V P++ +    Y+ +
Sbjct: 209 SLIGWKEFEMEVVRDRVDNCIIVCSIENLDPMGVHT----GDSITVAPSQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P   ++  +E+N 
Sbjct: 265 RNASIAILREIGVDTGGSNVQFAINPKDGRMIVIEMNP 302



 Score = 60.9 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/202 (13%), Positives = 72/202 (35%), Gaps = 12/202 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           LE   +P   +       + D+ R ++++    +   P+         +     I  P V
Sbjct: 648 LEANGVPIVGTSPDMIDAAEDRERFQKLLKDLDLRQPPNRTARTEEEALKLAEEIGYPIV 707

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++    S+   + ++   ++   +L+++++ D IE+    + D    
Sbjct: 708 VRPSYVLGGRAMEIVHDQASLERYMREAVKVSNDSPVLLDRFLNDAIEVDVDCLSDGERT 767

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                +   +       +S  ++  + P  +     +E++R   L  + +   G+    F
Sbjct: 768 FIGGVMEHIEQAGV---HSGDSACSLPPYSLSKATIEELKRQTTLMAKGLNVVGLMNVQF 824

Query: 249 LFDPLS------RKVFWLEINV 264
                         V+ LE+N 
Sbjct: 825 AIQHQEVNGKLQDVVYVLEVNP 846


>gi|160946929|ref|ZP_02094132.1| hypothetical protein PEPMIC_00890 [Parvimonas micra ATCC 33270]
 gi|158447313|gb|EDP24308.1| hypothetical protein PEPMIC_00890 [Parvimonas micra ATCC 33270]
          Length = 455

 Score = 71.3 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 80/220 (36%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  FG   E+     ++E   + +        ++  DK  ++  + + GVPV P    
Sbjct: 77  AIHPGFGFLSENPKFAKLVEECGLIFVGPNHKLISMLGDKNEARLQMINIGVPVIPGTKN 136

Query: 112 LVNRFTMD--SQHLISPPYVIKPLKGGSSLGIIVIKKD----QSIPLDLLQSSSWNHGDQ 165
           ++            I  P +IK   GG   G+ ++       ++      ++    + D+
Sbjct: 137 VIENVEEGLLEAEKIGYPVIIKASSGGGGKGMRIVWDSSDFIENFNTAKSEAKVSFNDDR 196

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+Y++    +   ++GD   +V  +            K       HV    +   I 
Sbjct: 197 VYIEKYIELPKHIEVQILGDMFGNVIHLYERDCSMQRKNQKILEEAPCHV----LDKKIR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +++   A    + +        +FL D      +++E+N 
Sbjct: 253 EKLITDAVKICKHLKYYSAGTIEFLVDKSGN-YYFMEMNT 291


>gi|150403353|ref|YP_001330647.1| RimK domain-containing protein [Methanococcus maripaludis C7]
 gi|150034383|gb|ABR66496.1| RimK domain protein ATP-grasp [Methanococcus maripaludis C7]
          Length = 316

 Score = 71.3 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 41/260 (15%), Positives = 96/260 (36%), Gaps = 47/260 (18%)

Query: 65  DGL-VQAILELLEIPYTHSGILAS------------ALSMDKMRSKQVVSSCGVPVCPSI 111
           DGL +++  + + I Y  S I                +  DK+     +    VP+  + 
Sbjct: 51  DGLFIRSKTDPMNISYVASRIAELNGVRVIDDSKSIQICADKINMYLHMMKNDVPIPKTK 110

Query: 112 LVNRFTMDSQHL------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
            + +   + ++L      I  P ++K      S+ +  +   +        +S +     
Sbjct: 111 FLKKSENNIENLKSITEEIGLPLIVKEPSTSFSMRVEKVTSLEEFS---KVASRFLRLSD 167

Query: 166 LLI-EQYVDGI-ELTCGVMGDASLDVTEIAVPKSDF-----YSYELKYSSLNSTHVLPAK 218
           +L+ +++++   +   G++    +   +  +PK  F           Y  + S       
Sbjct: 168 ILVAQEFIESRFDWRVGILNGEVIYACKYLIPKETFKIQDCVDGHRVYCMVESVMY---- 223

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM--TPVSIFPE 276
              ++ K+V   A  A  A+G       D      S KV+ +E+N  P +  T    +PE
Sbjct: 224 --DEVPKKVINTALKAANAVGTGLYG-VD--LKENSGKVYVIEVNDNPSLETTEDEFYPE 278

Query: 277 MAAYAGYSFRELLLWMVEDA 296
                   + +++ ++++D+
Sbjct: 279 A-------YSKIVSYIMDDS 291


>gi|117621084|ref|YP_856605.1| methylcrotonoyl-CoA carboxylase alpha chain [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
 gi|117562491|gb|ABK39439.1| methylcrotonoyl-CoA carboxylase alpha chain [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
          Length = 654

 Score = 71.3 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 81/221 (36%), Gaps = 20/221 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H  +G   E+       E   + +      A     DK  +K ++ + GVPV P    
Sbjct: 82  AIHPGYGFLSENSDFATACEQRGVRFIGPSGAAILAMGDKSGAKALMQAAGVPVLPGYHG 141

Query: 113 ---VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK----DQSIPLDLLQSSSWNHGDQ 165
                 F  D   L+  P +IK   GG   G+  + +    D ++     ++S+    D 
Sbjct: 142 ADQHPDFLRDQASLVGFPLLIKAASGGGGKGMRRVDQLADFDDALAAVKREASAAFGDDH 201

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDI 223
           +L+E+Y+     +   V  D   +   +           L+          PA  I   +
Sbjct: 202 VLLERYLARARHVEVQVFADTLGNAIYL-----GDRDCSLQRRHQKVIEEAPAPDIAPAL 256

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +   A  A +AI  RG    +FL      + F++E+N 
Sbjct: 257 RRAMGEAAVAAARAITYRGAGTIEFLL--CGEEFFFMEMNT 295


>gi|206971153|ref|ZP_03232104.1| carbamoyl-phosphate synthase, large subunit [Bacillus cereus
           AH1134]
 gi|206733925|gb|EDZ51096.1| carbamoyl-phosphate synthase, large subunit [Bacillus cereus
           AH1134]
          Length = 1072

 Score = 71.3 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 53/315 (16%), Positives = 118/315 (37%), Gaps = 39/315 (12%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQIDVD---------------------RSVGLV 45
           G ++E + S   G     +L + G+KV  ++ +                       V  +
Sbjct: 21  GQAAEFDYS---GTQACQSLREEGYKVILVNSNPATIMTDTATADKVYIEPLTLEFVSRI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   +PD     L G  G +  V+     ILE   +    + + A   + D+   + ++ 
Sbjct: 78  IRKERPDAILPTLGGQTGLNMAVELAKSGILEECGVEILGTKLSAIEQAEDRDLFRSLMQ 137

Query: 102 SCGVPVCPSILVNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
               P+  S +++      +    I  P +++P       G  +   ++ +   +     
Sbjct: 138 ELNEPIPSSTIIHTLEEAHEFVKEIGYPVIVRPAFTMGGTGGGICSNEEELIEIVSGGLK 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   Q L+E+ + G  E+   VM D++ +   I V   +       ++  +S  V P++
Sbjct: 198 HSPVTQCLLEKSIAGCKEIEYEVMRDSNDNA--IVVCNMENIDPVGVHT-GDSIVVAPSQ 254

Query: 219 -IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
            +    Y+ ++  +    +A+G  G        DP S + + +E+N  P ++  S     
Sbjct: 255 TLSDREYQMLRNTSLRIIRALGIEGGCNVQLALDPYSFQYYVIEVN--PRVSRSS--ALA 310

Query: 278 AAYAGYSFRELLLWM 292
           +   GY   +L   +
Sbjct: 311 SKATGYPIAKLAAKI 325



 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 26/221 (11%), Positives = 80/221 (36%), Gaps = 20/221 (9%)

Query: 68  VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLIS 125
           + A LE   +    + +     + D+ + +  ++  G+P             +     I 
Sbjct: 642 LAAKLEAHGVKILGTSLEDLDRAEDRDKFEAALTQLGIPQPVGKTATTVEQAVAIADKIG 701

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            P +++P        + ++ + + +   +  +   +    +LI++Y+ G E+    + D 
Sbjct: 702 YPVLVRPSYVLGGRAMEIVYRQEELLHYMKNAVKVHADHPVLIDRYMVGKEIEVDAISDG 761

Query: 186 S---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCR 241
               +      + ++  +S        +S  V P + +   + +++        + +   
Sbjct: 762 ENVFIPGIMEHIERAGVHS-------GDSIGVYPPQSLSDKLKEQIIEHTIALGKGLNIV 814

Query: 242 GISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277
           G+    F+      +V+ +E+N       P ++ ++  P  
Sbjct: 815 GLLNIQFVV--FEDQVYVIEVNPRASRTVPFLSKITGVPMA 853


>gi|37525394|ref|NP_928738.1| hypothetical protein plu1440 [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36784821|emb|CAE13733.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 417

 Score = 71.3 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 46/218 (21%), Positives = 82/218 (37%), Gaps = 32/218 (14%)

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--QHLISPPYVIKPLKGGSSLGIIVIKK 146
           L+ +K   ++   + G+ V      N     +        P V+KP   G S G+  +  
Sbjct: 107 LTRNKFEMRKAAHAGGLNVPKFARFNHLEQLATLAEDFPFPAVVKPTNAGGSEGVTYVAS 166

Query: 147 DQSIPLDLLQSSSWNH---------GDQLLIEQYVDGI-ELTCGVM----GDASLDVTEI 192
              +                      +   IEQ+VD   EL+  V+    G   L VT+ 
Sbjct: 167 KDDLASAFANLRRVTENYGSEFGIADNDYQIEQFVDARIELSVEVLNTKTGRRVLAVTDK 226

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR-GISRSDFLFD 251
            +     +        +   H LP+    +  + +++ A  A + +    GI+  +F+ D
Sbjct: 227 ELTPLPHF--------VEIGHSLPSIESDN--EALKQAALKACEVLDVEHGIAHVEFMID 276

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAY-AGYSFREL 288
             S K++ LE+N +   TP    PE+    AG +  EL
Sbjct: 277 -HSGKIYLLELNAR---TPGGGIPEIFEKIAGVNMLEL 310


>gi|329965083|ref|ZP_08302052.1| hypothetical protein HMPREF9446_03669 [Bacteroides fluxus YIT
           12057]
 gi|328523911|gb|EGF50989.1| hypothetical protein HMPREF9446_03669 [Bacteroides fluxus YIT
           12057]
          Length = 394

 Score = 71.3 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 34/199 (17%), Positives = 68/199 (34%), Gaps = 21/199 (10%)

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKP 132
           E+L +P   +         +K   +Q +   G  V  +I   R           P ++KP
Sbjct: 85  EVLGLP--GNTFDNICRFGEKHLWRQFLRENGFNVPKAIPYQRAEDIDVTDWRFPVMVKP 142

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD--GIELTC-GVMGDASLDV 189
           +    S GI  +     +      + S++    +LIE++++  G ++   G  G   L+ 
Sbjct: 143 VDSSGSKGITKVTSALDLESAFDYALSYSRLKIVLIEEFIERVGSQIGGDGFYGKDKLEF 202

Query: 190 TEIA--VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI---- 243
                 V       Y             PA +   + + +        +AIG  G+    
Sbjct: 203 ICYGEQVVDEKINGYVP------CGMKFPALLSSSLEQRITH---DIERAIGLSGLHDLS 253

Query: 244 SRSDFLFDPLSRKVFWLEI 262
              + + D     ++ +EI
Sbjct: 254 FNLEVMIDEAEN-IYLMEI 271


>gi|283836196|ref|ZP_06355937.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Citrobacter
           youngae ATCC 29220]
 gi|291067548|gb|EFE05657.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Citrobacter
           youngae ATCC 29220]
          Length = 449

 Score = 71.3 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 42/222 (18%), Positives = 82/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         L  DK+ +   +   GVP  P    
Sbjct: 77  AIHPGYGFLSENANFAEQVERSGFIFIGPKADTIRLMGDKVSAITAMKKAGVPTVPGSDG 136

Query: 112 -LVNRFTMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
            L +    +  H   I  P +IK   GG   G+ V++ D  +   +     ++ +  + D
Sbjct: 137 PLGDDMDANRAHAKRIGYPVIIKASGGGGGRGMRVVRSDAELAQSISMTKAEAKAAFNND 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+Y++    +   V+ D   +   +A           K          PA  I  +
Sbjct: 197 MVYMEKYLENPRHIEIQVLADGQGNAIYLAERDCSMQRRHQK-----VVEEAPAPGITPE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + + +      A   IG RG    +FLF   + + +++E+N 
Sbjct: 252 LRRYIGERCAKACVDIGYRGAGTFEFLF--ENGEFYFIEMNT 291


>gi|262407193|ref|ZP_06083742.1| acetyl-CoA carboxylase, biotin carboxylase [Bacteroides sp. 2_1_22]
 gi|262355896|gb|EEZ04987.1| acetyl-CoA carboxylase, biotin carboxylase [Bacteroides sp. 2_1_22]
          Length = 511

 Score = 71.3 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 82/220 (37%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       +   I +            DK+ ++  +   GVPV P    
Sbjct: 84  AIHPGYGFLSENATFARRCQEEGIIFIGPNPETMEAMGDKIAARIKMIEAGVPVVPGTQD 143

Query: 114 NRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
           N  +++      + I  P ++K   GG   G+ +I   + +      + S +      D 
Sbjct: 144 NLKSVEEAVELCNKIGYPVMLKASMGGGGKGMRLIHSAEEVEEAYTTAKSESLSSFGDDT 203

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E++V+    +   ++GD   +V  +   +        K             +  ++ 
Sbjct: 204 VYLEKFVEEPHHIEFQILGDKHGNVIHLCERECSVQRRNQKI----VEETPSVFVTPELR 259

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K++   A  A +A+   G    +FL D   R  ++LE+N 
Sbjct: 260 KDMGEKAVAAAKAVNYIGAGTIEFLVDKH-RNYYFLEMNT 298


>gi|237714144|ref|ZP_04544625.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|294646939|ref|ZP_06724558.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Bacteroides
           ovatus SD CC 2a]
 gi|229445968|gb|EEO51759.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|292637709|gb|EFF56108.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Bacteroides
           ovatus SD CC 2a]
          Length = 504

 Score = 71.3 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 82/220 (37%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       +   I +            DK+ ++  +   GVPV P    
Sbjct: 77  AIHPGYGFLSENATFARRCQEEGIIFIGPNPETMEAMGDKIAARIKMIEAGVPVVPGTQD 136

Query: 114 NRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
           N  +++      + I  P ++K   GG   G+ +I   + +      + S +      D 
Sbjct: 137 NLKSVEEAVELCNKIGYPVMLKASMGGGGKGMRLIHSAEEVEEAYTTAKSESLSSFGDDT 196

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E++V+    +   ++GD   +V  +   +        K             +  ++ 
Sbjct: 197 VYLEKFVEEPHHIEFQILGDKHGNVIHLCERECSVQRRNQKI----VEETPSVFVTPELR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K++   A  A +A+   G    +FL D   R  ++LE+N 
Sbjct: 253 KDMGEKAVAAAKAVNYIGAGTIEFLVDKH-RNYYFLEMNT 291


>gi|195028269|ref|XP_001986999.1| GH20214 [Drosophila grimshawi]
 gi|193902999|gb|EDW01866.1| GH20214 [Drosophila grimshawi]
          Length = 1197

 Score = 71.3 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 30/205 (14%), Positives = 78/205 (38%), Gaps = 17/205 (8%)

Query: 69  QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLI 124
           QA+++   + +            DK+ ++      GVP+ P     +      +      
Sbjct: 131 QAVID-AGLRFIGPTPKVVQNMGDKVAARIAAIEAGVPIVPGTDGPVTTKEDALAFCQKH 189

Query: 125 SPPYVIKPLKGGSSLGIIVI----KKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTC 179
             P + K   GG   G+ V+    + +++      ++ +      + IE++++    +  
Sbjct: 190 GLPVIFKAAYGGGGRGMRVVRKMEEVEENFQRASSEAKAAFGNGAMFIEKFIERPRHIEV 249

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAI 238
            ++GD + +V  +           ++        + PA ++P++I  ++   A    + +
Sbjct: 250 QLLGDKAGNVVHLYE-----RDCSVQRRHQKVVEIAPAPRLPIEIRDKMTEAAVRLAKHV 304

Query: 239 GCRGISRSDFLFDPLSRKVFWLEIN 263
           G       +FL D      +++E+N
Sbjct: 305 GYENAGTVEFLCDESGN-FYFIEVN 328


>gi|124025937|ref|YP_001015053.1| phosphoribosylglycinamide formyltransferase 2 [Prochlorococcus
           marinus str. NATL1A]
 gi|171769739|sp|A2C2S8|PURT_PROM1 RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|123961005|gb|ABM75788.1| Formate-dependent phosphoribosylglycinamide [Prochlorococcus
           marinus str. NATL1A]
          Length = 387

 Score = 71.3 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 40/246 (16%), Positives = 95/246 (38%), Gaps = 27/246 (10%)

Query: 31  FKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
           F V  ++    +  V+    PD+    +         V  + E+ +         A+A +
Sbjct: 49  FNVFNMNNGSELKEVIYKCNPDIIIPEIEAL-----AVDVLKEIEQKITVIPNSRATATT 103

Query: 91  MDKMRSKQVVSS-CGVPVCPS-ILVNRFTMD-SQHLISPPYVIKPLKGGSSLGIIVIKKD 147
           M++ + + + S+   +        VN+  +D     I  P +IKP+   S  G  ++K  
Sbjct: 104 MNRDKIRDLASNELNIRTAKFSYAVNQSELDLHAETIGYPLLIKPVMSSSGKGQSLVKNK 163

Query: 148 QSIPLD--LLQSSSWNHGDQLLIEQYVDGIELTCGVM-----GDASLDVTEIAVPKSDFY 200
             +     L    S    +++++E+++D  +L   ++        +L    I   +    
Sbjct: 164 NELAQAWNLAIEKSRGKSNKIILEEFID-FDLEITLLTIRQSNGKTLFCAPIG-HEQKNG 221

Query: 201 SYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260
            Y+  +         PA++   + ++ Q++A      +G  G+   +F       +V + 
Sbjct: 222 DYQCSW--------QPAELTESVLEKAQQIAKRVTDNLGGVGLFGVEFFI--KGEEVIFS 271

Query: 261 EINVQP 266
           E++ +P
Sbjct: 272 ELSPRP 277


>gi|17567343|ref|NP_509293.1| Propionyl Coenzyme A Carboxylase Alpha subunit family member
           (pcca-1) [Caenorhabditis elegans]
 gi|74964123|sp|Q19842|PCCA_CAEEL RecName: Full=Propionyl-CoA carboxylase alpha chain, mitochondrial;
           Short=PCCase subunit alpha; AltName:
           Full=Propanoyl-CoA:carbon dioxide ligase subunit alpha;
           Flags: Precursor
 gi|1203927|gb|AAA93384.1| Propionyl coenzyme a carboxylase alpha subunit protein 1, confirmed
           by transcript evidence [Caenorhabditis elegans]
          Length = 724

 Score = 71.3 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 82/221 (37%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+    A LE     +      A     DK+ SK++ ++  V + P    
Sbjct: 124 AVHPGYGFLSENTKFAAELEKAGAKFIGPNSKAILDMGDKIHSKKIATAARVSMIPGYDG 183

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGD 164
                D        I  P +IK   GG   G+ V   D+             +SS+   D
Sbjct: 184 EIADEDMCVKVSRDIGYPVMIKASAGGGGKGMRVAWNDKQAREGYRLSKQEAASSFG-DD 242

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           ++L+E+++D    +   V+ D   +   +   +        K           + +P ++
Sbjct: 243 RMLVEKFIDNPRHIEMQVLCDKHGNALWLNERECSIQRRNQK----VIEEAPSSFVPPEM 298

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +++   A    +A+G       +FL D   R  ++LE+N 
Sbjct: 299 RRKMGEQAVQLAKAVGYDSAGTVEFLVDSQ-RNFYFLEMNT 338


>gi|301330201|ref|ZP_07222861.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli MS
           78-1]
 gi|300843763|gb|EFK71523.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli MS
           78-1]
          Length = 618

 Score = 71.3 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 97/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D +              V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +    Q +LE   +    +   A   + D+ R    +   G+    S +
Sbjct: 89  TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGI 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     +     +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHTMEEALAVAADVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + +   +   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIEN----FDAMGIHTGDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RNASMAVLREIGVETGGSNVQFAVNPKNGRLIVIEMNP 302


>gi|300900947|ref|ZP_07119081.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli MS
           198-1]
 gi|300355574|gb|EFJ71444.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli MS
           198-1]
          Length = 618

 Score = 71.3 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 97/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D +              V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +    Q +LE   +    +   A   + D+ R    +   G+    S +
Sbjct: 89  TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGI 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     +     +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHTMEEALAVAADVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + +   +   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIEN----FDAMGIHTGDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RNASMAVLREIGVETGGSNVQFAVNPKNGRLIVIEMNP 302


>gi|298479589|ref|ZP_06997789.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Bacteroides sp.
           D22]
 gi|295085016|emb|CBK66539.1| biotin carboxylase [Bacteroides xylanisolvens XB1A]
 gi|298273979|gb|EFI15540.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Bacteroides sp.
           D22]
          Length = 511

 Score = 71.3 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 82/220 (37%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       +   I +            DK+ ++  +   GVPV P    
Sbjct: 84  AIHPGYGFLSENATFARRCQEEGIIFIGPNPETMEAMGDKIAARIKMIEAGVPVVPGTQD 143

Query: 114 NRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
           N  +++      + I  P ++K   GG   G+ +I   + +      + S +      D 
Sbjct: 144 NLKSVEEAIELCNKIGYPVMLKASMGGGGKGMRLIHSAEEVEEAYTTAKSESLSSFGDDT 203

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E++V+    +   ++GD   +V  +   +        K             +  ++ 
Sbjct: 204 VYLEKFVEEPHHIEFQILGDKHGNVIHLCERECSVQRRNQKI----VEETPSVFVTPELR 259

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K++   A  A +A+   G    +FL D   R  ++LE+N 
Sbjct: 260 KDMGEKAVAAAKAVNYIGAGTIEFLVDKH-RNYYFLEMNT 298


>gi|285018123|ref|YP_003375834.1| carbamoyl-phosphate synthetase large chain protein [Xanthomonas
           albilineans GPE PC73]
 gi|283473341|emb|CBA15846.1| probable carbamoyl-phosphate synthetase large chain protein
           [Xanthomonas albilineans]
          Length = 1080

 Score = 71.3 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 46/278 (16%), Positives = 101/278 (36%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL D G++V  +         D +            ++V  ++A  KPD    
Sbjct: 29  SGAQACKALRDEGYRVVLVNSNPATIMTDPNMADAVYIEPINWQTVEKIIAKEKPDALLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      +LE   +    +   A  ++ D+   +  +   G+    + +
Sbjct: 89  TMGGQTALNCALDLADHGVLEKYGVELIGAKREAIRMAEDRELFRVAMGEIGLECPKAAV 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  ++ Q  +  P +I+P       G  +    + +   + +    +   ++L+E+
Sbjct: 149 ARTLEEALEIQTRVGYPTIIRPSFTLGGSGGGIAYNREELIEIVGRGLELSPTSEVLVEE 208

Query: 171 YVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            V G  E    V+ D + + +   A+   D           +S  V PA+ +    Y+ +
Sbjct: 209 SVLGWKEFEMEVVRDTADNCIIVCAIENLDPMGVHT----GDSITVAPAQTLTDKEYQRL 264

Query: 228 QRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +  + +V  +E+N 
Sbjct: 265 RDASIAVLRKIGVDTGGSNVQFGINAQTGRVVVIEMNP 302



 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 33/199 (16%), Positives = 78/199 (39%), Gaps = 8/199 (4%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           LE   +P   +   +  L+ D+ R +Q+V   G+   P+ +       +     I  P V
Sbjct: 654 LEANGVPVIGTSPDSIDLAEDRERFQQLVDQLGLKQPPNRIARNAEEALVLAREIGYPLV 713

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLD 188
           ++P        + ++  +  +   +  +   ++   +L+++++D  +E+   ++ D    
Sbjct: 714 VRPSYVLGGRAMEIVYGESDLARYVRDAVKVSNESPVLLDRFLDNAVEVDVDIIADKDGK 773

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           V    V   +       +S  +S  + P  +      E++R      +A+   G+  + F
Sbjct: 774 VLIGGV--MEHIEEAGVHSGDSSCSLPPYSLSPATQAELRRQVVELAKALHVVGLMNTQF 831

Query: 249 LF---DPLSRKVFWLEINV 264
                D     V+ LE+N 
Sbjct: 832 AVQVNDAGDDIVYLLEVNP 850


>gi|290962494|ref|YP_003493676.1| bifunctional protein (ligase and argininosuccinate lyase)
           [Streptomyces scabiei 87.22]
 gi|260652020|emb|CBG75152.1| putative bifunctional protein (ligase and argininosuccinate lyase)
           [Streptomyces scabiei 87.22]
          Length = 418

 Score = 71.3 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 40/230 (17%), Positives = 88/230 (38%), Gaps = 29/230 (12%)

Query: 58  LHGNFGEDGLVQA----------ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV 107
           LHG FG DG++ +          I   L +P    G  A   +  K  +++V+    VP 
Sbjct: 75  LHGVFGFDGVISSCDYYLPTVARIAGRLGLP--GPGPRAVEDACRKDATRRVLDDADVPG 132

Query: 108 CPSILVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
               L   +     +   I  P V+KP+   + + +  +  +  +   +   + +    +
Sbjct: 133 PRFALHEEWADLARAAREIGYPLVVKPVDLCAGMFVRRVDDEAELAAAVRSLADFPLNAR 192

Query: 166 -------LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
                  +L+E+ + G E++     +       + V      S     + + + H+ PA 
Sbjct: 193 GQRRVPGVLLEELLTGPEVSV----ETVSHAGAVHVVGVTDKSVGGAPAFIETGHMFPAA 248

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRG--ISRSDFLFDPLSRKVFWLEINVQP 266
           +     +  ++ A  A +A+G     ++ ++    P   +V   E+N +P
Sbjct: 249 LTGADTEAAEQTALSALKALGLTDGLVAHTEIKLTPAGPRVV--EVNPRP 296


>gi|160914208|ref|ZP_02076429.1| hypothetical protein EUBDOL_00216 [Eubacterium dolichum DSM 3991]
 gi|158433835|gb|EDP12124.1| hypothetical protein EUBDOL_00216 [Eubacterium dolichum DSM 3991]
          Length = 1065

 Score = 71.3 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 30/211 (14%), Positives = 75/211 (35%), Gaps = 14/211 (6%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQHLISPPYVIKPL 133
            +    + + A   + D+   +Q++    +P             ++  + I+ P +++P 
Sbjct: 650 GVKILGTSLEAIDRAEDRHEFEQMLRKLDIPQPTGDTAYEVEKAIEIANRITYPVLVRPS 709

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSW-NHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192
                  + ++  D+ + + +  +    +H   +L+++YV G E+    + D        
Sbjct: 710 YVLGGRAMEIVHNDEDLRVYMATAVQEISHDAPILVDKYVIGKEMEVDAICDGEHVFIPG 769

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
            +   +           +S  V PA      +   +   A    +     G+    F+ D
Sbjct: 770 IMEHIERAGVHS----GDSISVYPAPTASQKVKDTIVDYAIRIGKGFHFVGLFNIQFIVD 825

Query: 252 PLSRKVFWLEIN-----VQPGMTPVSIFPEM 277
               KV+ LE+N       P ++ ++  P  
Sbjct: 826 K-DEKVYVLEVNPRSSRTVPFLSKITGVPMS 855



 Score = 59.8 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 53/287 (18%), Positives = 107/287 (37%), Gaps = 35/287 (12%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQID------------VDRSVGLVLA------- 47
           G ++E + +   G    ++L + G++V  I+             DR     L        
Sbjct: 21  GQAAEFDYA---GTQACTSLREEGYEVILINSNPATIMTDSVIADRVYIEPLTLEFASRI 77

Query: 48  --HLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
               +PD     L G  G + +V+     IL+   +    + + A   + D+ + ++++ 
Sbjct: 78  IYKERPDAVLGSLGGQTGLNLVVELAESGILDECGVEILGTELDAIEKAEDRDKFRELMY 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G PV  S++V+     ++  +    P V++P       G       + + +       
Sbjct: 138 ELGEPVPESVIVHSVEEAVEFANTNGYPVVVRPAFTLGGTGGGFANNLEELEVICENGLK 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   Q LIEQ + G  E+   VM D + +   I V   +     +   + +S  V P +
Sbjct: 198 LSPVHQCLIEQSIAGYKEIEYEVMRDNADNA--IVVCNMENVD-PVGIHTGDSIVVAPTQ 254

Query: 219 -IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +       ++  A    +A+   G        DP S K + +E+N 
Sbjct: 255 TLTDRECGMMRAAALKIIRALKICGGCNVQLALDPNSFKYYVIEVNP 301


>gi|315293394|gb|EFU52746.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli MS
           153-1]
          Length = 1073

 Score = 71.3 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 97/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D +              V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +    Q +LE   +    +   A   + D+ R    +   G+    S +
Sbjct: 89  TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGI 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     +     +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHSMEEALAVAAEVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + +   +   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIEN----FDAMGIHTGDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RNASMAVLREIGVETGGSNVQFAVNPKNGRLIVIEMNP 302



 Score = 60.5 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 29/197 (14%), Positives = 74/197 (37%), Gaps = 10/197 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           LE   +P   +   A   + D+ R +  V    +    +  V      ++    I  P V
Sbjct: 654 LEAAGVPVIGTSPDAIDRAEDRERFQHAVERLKLKQPANATVTTIEMAVEKAKEIGYPLV 713

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  +  +      + S ++   +L++ ++ D +E+    + D  + 
Sbjct: 714 VRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDDAVEVDVDAICDGEVV 773

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           +    +   +    +    S +S   LPA  +  +I   +++        +  RG+    
Sbjct: 774 LIGGIMEHIE----QAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRGLMNVQ 829

Query: 248 FLFDPLSRKVFWLEINV 264
           F     + +V+ +E+N 
Sbjct: 830 FAV--KNNEVYLIEVNP 844


>gi|304396527|ref|ZP_07378408.1| carbamoyl-phosphate synthase, large subunit [Pantoea sp. aB]
 gi|304356036|gb|EFM20402.1| carbamoyl-phosphate synthase, large subunit [Pantoea sp. aB]
          Length = 1075

 Score = 71.3 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 97/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D +              V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      +LE   +    +   A   + D+ R    + S G+    S +
Sbjct: 89  TMGGQTALNCALELERHGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKSIGLDTARSGI 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     +     +  P +I+P       G  +    +       +    +  ++LLI++
Sbjct: 149 AHTMEEALAVAEDVGFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTNELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + +   +   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIEN----FDAMGIHTGDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P   ++  +E+N 
Sbjct: 265 RNASLAVLREIGVETGGSNVQFSVNPKDGRLIVIEMNP 302



 Score = 60.1 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 28/197 (14%), Positives = 74/197 (37%), Gaps = 10/197 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           LE   +P   +   +   + D+ R +Q V    +    +  V      ++    +  P V
Sbjct: 654 LEAAGVPVIGTSPDSIDRAEDRERFQQAVDRLNLKQPANATVATLEQAVEKAAGLGYPLV 713

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  +  +      + S ++   +L+++++ D +E+    + D    
Sbjct: 714 VRPSYVLGGRAMEIVYDEIDLKRYFQTAVSVSNDAPVLLDRFLDDAVEVDVDAICDGERV 773

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           +    +   +    +    S +S   LPA  +  +I   +++        +  RG+    
Sbjct: 774 LIGGIMEHIE----QAGVHSGDSACSLPAYTLSQEIQNVMRQQVEKLAFELNVRGLMNVQ 829

Query: 248 FLFDPLSRKVFWLEINV 264
           F       +V+ +E+N 
Sbjct: 830 FAV--KDNEVYLIEVNP 844


>gi|293369891|ref|ZP_06616464.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Bacteroides
           ovatus SD CMC 3f]
 gi|292635068|gb|EFF53587.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Bacteroides
           ovatus SD CMC 3f]
          Length = 504

 Score = 71.3 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 82/220 (37%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       +   I +            DK+ ++  +   GVPV P    
Sbjct: 77  AIHPGYGFLSENATFARRCQEEGIIFIGPNPETMEAMGDKIAARIKMIEAGVPVVPGTQD 136

Query: 114 NRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
           N  +++      + I  P ++K   GG   G+ +I   + +      + S +      D 
Sbjct: 137 NLKSVEEAIELCNKIGYPVMLKASMGGGGKGMRLIHSAEEVEEAYTTAKSESLSSFGDDT 196

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E++V+    +   ++GD   +V  +   +        K             +  ++ 
Sbjct: 197 VYLEKFVEEPHHIEFQILGDKHGNVIHLCERECSVQRRNQKI----VEETPSVFVTPELR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K++   A  A +A+   G    +FL D   R  ++LE+N 
Sbjct: 253 KDMGEKAVAAAKAVNYIGAGTIEFLVDKH-RNYYFLEMNT 291


>gi|225868427|ref|YP_002744375.1| carbamoyl-phosphate synthase large chain [Streptococcus equi subsp.
           zooepidemicus]
 gi|259585684|sp|C0MEH1|CARB_STRS7 RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|225701703|emb|CAW99044.1| carbamoyl-phosphate synthase large chain [Streptococcus equi subsp.
           zooepidemicus]
          Length = 1058

 Score = 71.3 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 45/268 (16%), Positives = 100/268 (37%), Gaps = 30/268 (11%)

Query: 25  ALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNVLHGNFG 63
           AL++ G++V  ++        D+ V                +L   +PD     L G  G
Sbjct: 36  ALKEEGYQVVLVNSNPATIMTDKEVADKVYIEPLTLAFVSRILRKERPDALLPTLGGQTG 95

Query: 64  EDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFT 117
            +  ++     IL+ L +    + + A   + D+   KQ++   G P+  S +V      
Sbjct: 96  LNLAMELSKAGILQELGVELLGTPLSAIDQAEDRDLFKQLMKELGEPIPESEIVTTVEGA 155

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IE 176
           +   + I  P +++P       G  +   ++++   +      +   Q LIE+ + G  E
Sbjct: 156 ISFANAIGYPVIVRPAFTLGGTGGGICTNEEALRDIVENGLKLSPVTQCLIERSIAGFKE 215

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +   VM DA+ +   + V   + +     ++  +        +     + ++  +    +
Sbjct: 216 IEYEVMRDAADNA--LVVCSMENFDPVGIHTGDSIVFAPTQTLSDVENQLLRDASLRIIR 273

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINV 264
           A+   G        DP S   + +E+N 
Sbjct: 274 ALKIEGGCNVQLALDPNSFSYYVIEVNP 301



 Score = 71.3 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 26/225 (11%), Positives = 76/225 (33%), Gaps = 13/225 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL--ISPPYV 129
           L    +P   + +     + D+   ++ +   G+P  P           +    I  P +
Sbjct: 646 LTKAGVPILGTQLEDLDRAEDRKLFEKALKDLGIPQPPGKTATNEAEALEAARAIGFPVL 705

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           ++P        + +++ +  +   +  +   +    +LI+ Y+ G E     + D    +
Sbjct: 706 VRPSYVLGGRAMEIVENEDDLRSYMKTAVKASPEHPVLIDSYILGKECEVDAISDGQSVL 765

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               +   +           +S  V P + +   +  ++          + C G+    F
Sbjct: 766 IPGIMEHIERAGVHS----GDSMAVYPPQHLSKQVQDKIVDYTKRLAIGLNCIGMMNIQF 821

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    + +V+ +E+N +   T     P ++        ++   ++
Sbjct: 822 VI--QNEQVYVIEVNPRASRT----VPFLSKVTNIPMAQVATKLI 860


>gi|78184411|ref|YP_376846.1| carbamoyl phosphate synthase large subunit [Synechococcus sp.
           CC9902]
 gi|78168705|gb|ABB25802.1| carbamoyl-phosphate synthase large subunit [Synechococcus sp.
           CC9902]
          Length = 1106

 Score = 71.3 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 58/283 (20%), Positives = 95/283 (33%), Gaps = 44/283 (15%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL   GF+V  +         D                V  V+   +PD    
Sbjct: 29  SGTQACKALRAEGFEVVLVNSNPASIMTDPGMADRTYIEPLTPEVVTQVIEKERPDALLP 88

Query: 57  VLHG--------NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
            + G           E+G     L+   +    + + A   + D++  KQ +   GV VC
Sbjct: 89  TMGGQTALNLAVTLAENGT----LDRFGVELIGADLQAIQKAEDRLLFKQAMERIGVSVC 144

Query: 109 PS---ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
           PS     +         + S P +I+P       G  +    +            +   Q
Sbjct: 145 PSGIASTLEEADAVGAEISSFPRIIRPAFTLGGSGGGIAYNPEEFAAICKSGLEASPVSQ 204

Query: 166 LLIEQYVDG-IELTCGVMGD-ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
           +LIEQ + G  E    VM D A   V   ++   D           +S  V PA+ +   
Sbjct: 205 ILIEQSLLGWKEFELEVMRDLADNVVIVCSIENLDPMGVHT----GDSITVAPAQTLTDR 260

Query: 223 IYKEVQRLAFLAHQAIG-CRGISRSDFLFDPLSRKVFWLEINV 264
            Y+ ++  +    + IG   G S   F  +P +  V  +E+N 
Sbjct: 261 EYQRLRDQSIAIIREIGVATGGSNIQFAINPDNGDVVVIEMNP 303



 Score = 47.8 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/219 (13%), Positives = 75/219 (34%), Gaps = 14/219 (6%)

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--QHLISPPYVIKPLKGGSS 138
            +   +   + D+ + + ++    +    + L            ++  P V++P      
Sbjct: 688 GTSPESIDRAEDREQFEAILRELDIRQPRNGLARSEEEARSIATVVGYPVVVRPSYVLGG 747

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKS 197
             + V+  +Q +   + ++        +LI+QY++  +E+    + D   +V    + + 
Sbjct: 748 RAMEVVFDEQELNRYMREAVQVEPDHPVLIDQYLENAVEVDVDALSDQDGNVVIGGLME- 806

Query: 198 DFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF-DPLSR 255
             +       S +S   LP   +       ++  +     ++  +G+    F        
Sbjct: 807 --HIEPAGIHSGDSACCLPTVSLGESALHTIREWSKALAISLKVKGLINLQFAVQRDSDG 864

Query: 256 K--VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +  VF +E N +   T     P +A   G     L   +
Sbjct: 865 EEVVFIIEANPRASRT----VPFVAKATGKPLARLATRL 899


>gi|322834465|ref|YP_004214492.1| carbamoyl-phosphate synthase, large subunit [Rahnella sp. Y9602]
 gi|321169666|gb|ADW75365.1| carbamoyl-phosphate synthase, large subunit [Rahnella sp. Y9602]
          Length = 1074

 Score = 71.3 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 97/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D +              V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +    Q +LE   +    +   A   + D+ R    +   G+    S +
Sbjct: 89  TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLDTARSGI 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     +     +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHTMEEALAVAADVGFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTKELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + +   +   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIEN----FDAMGIHTGDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RNASMAVLREIGVETGGSNVQFSVNPKNGRLIVIEMNP 302



 Score = 58.6 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/197 (15%), Positives = 76/197 (38%), Gaps = 10/197 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           LE   +P   +   A   + D+ R +Q V+  G+    +  V      ++    I  P V
Sbjct: 654 LEAAGVPIIGTSPDAIDRAEDRERFQQAVNRLGLKQPANATVATIEQAVEKAAGIGYPLV 713

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  +  +      + S ++   +L+++++ D +E+    + D    
Sbjct: 714 VRPSYVLGGRAMEIVYDEIDLRRYFQNAVSVSNDAPVLLDRFLDDAVEVDVDAICDGERV 773

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           +    +   +    +    S +S   LP   +  +I   +++        +  RG+    
Sbjct: 774 LIGGIMEHIE----QAGVHSGDSACSLPCYTLSKEIQDVMRQQVEKLAFELSVRGLMNVQ 829

Query: 248 FLFDPLSRKVFWLEINV 264
           F     + +V+ +E+N 
Sbjct: 830 FAV--KNNEVYLIEVNP 844


>gi|308185623|ref|YP_003929754.1| carbamoyl-phosphate synthase large chain [Pantoea vagans C9-1]
 gi|308056133|gb|ADO08305.1| carbamoyl-phosphate synthase large chain [Pantoea vagans C9-1]
          Length = 1075

 Score = 71.3 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 97/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D +              V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      +LE   +    +   A   + D+ R    + S G+    S +
Sbjct: 89  TMGGQTALNCALELERHGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKSIGLDTARSGI 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     +     +  P +I+P       G  +    +       +    +  ++LLI++
Sbjct: 149 AHTMEEALAVAEDVGFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTNELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + +   +   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIEN----FDAMGIHTGDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P   ++  +E+N 
Sbjct: 265 RNASLAVLREIGVETGGSNVQFSVNPKDGRLIVIEMNP 302



 Score = 57.8 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/197 (14%), Positives = 74/197 (37%), Gaps = 10/197 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           LE   +P   +   +   + D+ R +Q V    +    +  V      ++    +  P V
Sbjct: 654 LEAAGVPVIGTSPDSIDRAEDRERFQQAVDRLKLKQPANATVATLEQAVEKAAGLGYPLV 713

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  +  +      + S ++   +L+++++ D +E+    + D    
Sbjct: 714 VRPSYVLGGRAMEIVYDEIDLRRYFQTAVSVSNDAPVLLDRFLDDAVEVDVDAICDGERV 773

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           +    +   +    +    S +S   LPA  +  +I   +++        +  RG+    
Sbjct: 774 LIGGIMEHIE----QAGVHSGDSACSLPAYTLNQEIQNVMRQQVEKLAFELNVRGLMNVQ 829

Query: 248 FLFDPLSRKVFWLEINV 264
           F       +V+ +E+N 
Sbjct: 830 FAV--KDNEVYLIEVNP 844


>gi|300716042|ref|YP_003740845.1| ribosomal protein S6 modification protein [Erwinia billingiae
           Eb661]
 gi|299061878|emb|CAX58994.1| Ribosomal protein S6 modification protein [Erwinia billingiae
           Eb661]
          Length = 300

 Score = 71.3 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 58/293 (19%), Positives = 108/293 (36%), Gaps = 53/293 (18%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-------------DRSVGLVLA 47
           +A+L       R+ SL S K    A    G  V  ID                  G  LA
Sbjct: 3   IAILS------RDGSLYSCKRLLEAARKRGHSVEVIDPLSCYMNINPGSSAIHYRGKQLA 56

Query: 48  HLKPDLAFN------VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           H   D            +G       V    E+    Y  +  +A   + DK+RS Q+++
Sbjct: 57  H--FDAVIPRIGSAITFYGT-----AVLRQFEVCG-SYPLNESVAITRARDKLRSLQLLA 108

Query: 102 SCGV--PVCPSILVNRFTMDSQHLISP-PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS 158
             G+  PV         T D   ++   P V+K ++G   +G+++ +  Q+     +  +
Sbjct: 109 RQGIDMPVTGFAHSPDDTSDLIKMVGGAPLVVKLVEGTQGIGVVLAETRQAAES--VIDA 166

Query: 159 SWNHGDQLLIEQYV---DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215
                  +L+++++   +G ++ C V+G   +   E +  + DF S   +  +  S    
Sbjct: 167 FRGLNAHILVQEFIKEAEGRDIRCLVIGGEVVAAIERSAKEGDFRSNLHRGGTARSI--- 223

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268
                 +I    + +A  A   +G   ++  D       R    +E+N  PG+
Sbjct: 224 ------EITGREREMAINAASTLGL-DVAGVD--ILRAKRGPLVMEVNASPGL 267


>gi|297694346|ref|XP_002824440.1| PREDICTED: propionyl-CoA carboxylase alpha chain,
           mitochondrial-like isoform 1 [Pongo abelii]
          Length = 728

 Score = 71.3 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 76/220 (34%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      L   ++ +      A     DK+ SK +     V   P    
Sbjct: 138 AVHPGYGFLSENKEFARCLAAEDVIFIGPDTHAIQAMGDKIESKLLAKKAEVNTIPGFDG 197

Query: 112 LVNRFTMDS--QHLISPPYVIKPLKGGSSLGIIVIKKDQS----IPLDLLQSSSWNHGDQ 165
           +V            I  P +IK   GG   G+ +   D+       L   +++S    D+
Sbjct: 198 VVKDAEEAVRIAREIGYPVMIKASAGGGGKGMRIAWDDEETRDGFRLSSQEAASSFGDDR 257

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           LLIE+++D    +   V+GD   +   +   +        K             + ++  
Sbjct: 258 LLIEKFIDNPRHIEIQVLGDKHGNALWLNERECSIQRRNQK----VVEEAPSIFLDVETR 313

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +   A    +A+        +FL D      ++LE+N 
Sbjct: 314 RAMGEQAVALARAVKYSSAGTVEFLVDSKKN-FYFLEMNT 352


>gi|172044618|sp|Q0I600|PURT_SYNS3 RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
          Length = 389

 Score = 71.3 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 39/231 (16%), Positives = 87/231 (37%), Gaps = 16/231 (6%)

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           ++  V+   +PD+    +     +   +QA LE   I        A+A++M++ R + + 
Sbjct: 59  ALKTVVNKHQPDVLIPEIEALAVD--ALQA-LEDTGI-CVIPTARATAVTMNRDRIRNLA 114

Query: 101 SS-CGVPVCPSILVNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD--LL 155
           +   G+        +       +   +  P V+KP+   S  G  V+     +     + 
Sbjct: 115 AGELGLRTARFAYASDAQELQRAAAPLGWPVVVKPVMSSSGKGQSVVHSAAELDKAWEIA 174

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215
            + +     Q+++E+++D  +L   ++     D T +  P          Y         
Sbjct: 175 MAGARGSSAQVIVEEFLD-FDLEITLLTIRQHDGTTLFCPPIGHQQANGDYQCSW----Q 229

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
           PA I     ++ Q +A      +G  G+   +F       +V + E++ +P
Sbjct: 230 PASISPSQLQQAQTMARTVTDNLGGAGLFGVEFFL--CGDEVVFSELSPRP 278


>gi|91791077|ref|YP_552027.1| carbamoyl-phosphate synthase L chain, ATP-binding [Polaromonas sp.
           JS666]
 gi|91700958|gb|ABE47129.1| Carbamoyl-phosphate synthase L chain, ATP-binding [Polaromonas sp.
           JS666]
          Length = 665

 Score = 71.3 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 32/220 (14%), Positives = 75/220 (34%), Gaps = 18/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---- 109
            +H  +G   E+      L+   + +             K  +K+  +  GVPV P    
Sbjct: 77  AVHPGYGFVSENAAFVRALDAAGLTFIGPTADTIERIGGKASAKREAARLGVPVIPGSEG 136

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGDQ 165
            +      +     ++ P ++K + GG   G+ V++  + +       + ++       +
Sbjct: 137 GMTDPTEVLRLVRGMTLPVLLKAVAGGGGRGMAVVETLEGLEGRIESAMREAEKSFGNGE 196

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           L++E+Y+     L   V GD       +   +        K           + +   + 
Sbjct: 197 LIVERYLPQVRHLEVQVAGDGQGHAIHLFERECTLQRRHQK----VIEEAPSSGLSPKLR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +   A      +  RG+   +F+      + ++LE+N 
Sbjct: 253 AAILADAVKLAAGVNYRGLGTVEFVVT--GGEHYFLEVNP 290


>gi|226942847|ref|YP_002797920.1| acetyl-CoA carboxylase biotin carboxylase subunit [Azotobacter
           vinelandii DJ]
 gi|226717774|gb|ACO76945.1| acetyl-CoA carboxylase, biotin carboxylase [Azotobacter vinelandii
           DJ]
          Length = 449

 Score = 71.3 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 37/217 (17%), Positives = 75/217 (34%), Gaps = 18/217 (8%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI--LVNRF 116
           +G   E+      +E     +         L  DK+ +K  +   GVP  P     +   
Sbjct: 82  YGFLAENADFAEQVEKSGFAFIGPTAEVIRLMGDKVSAKDAMKRTGVPTVPGSDGPLPEN 141

Query: 117 TMDS---QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQLLIE 169
             ++      +  P +IK   GG   G+ V++K++ +         ++ +      + +E
Sbjct: 142 EEEALAIAREVGYPVIIKAAGGGGGRGMRVVRKEEDLIKSARLTRTEAEAAFGNGMVYLE 201

Query: 170 QYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEV 227
           ++++    +   V+ D   +               L+          PA  I      EV
Sbjct: 202 KFLENPRHVEVQVLSDGKGNAI-----HLGDRDCSLQRRHQKVLEEAPAPNIDPQARAEV 256

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
                 A   IG RG    +FL+     + +++E+N 
Sbjct: 257 LDRCVRACIEIGYRGAGTFEFLY--EDGRFYFIEMNT 291


>gi|328946394|gb|EGG40535.1| carbamoyl-phosphate synthase, large subunit [Streptococcus
           sanguinis SK1087]
          Length = 1059

 Score = 71.3 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 23/224 (10%), Positives = 72/224 (32%), Gaps = 11/224 (4%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYV 129
           L    +    + +     + D+   +Q +    +P  P           ++   I  P +
Sbjct: 646 LSKAGVKILGTQVADLDRAEDRDLFEQALKELDIPQPPGQTATNEEEAVEAARKIGFPVL 705

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           ++P        + +++ +  +   +  +   +    +L++ Y+ G E     + D    +
Sbjct: 706 VRPSYVLGGRAMEIVENEADLRSYMRTAVKASPDHPVLVDSYIVGDECEVDAISDGRQVL 765

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
               +   +       +S  +     P  +   +   +          + C G+    F+
Sbjct: 766 IPGIMEHIERAGV---HSGDSMAAYPPQTLSQKVKDTIADYTKRLALGLNCIGMMNIQFV 822

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
                 +V+ +E+N +   T     P ++        ++   ++
Sbjct: 823 I--KDEQVYVIEVNPRASRT----VPFLSKVTDIPMAQVATRLI 860



 Score = 65.9 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 37/206 (17%), Positives = 78/206 (37%), Gaps = 9/206 (4%)

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147
           + D+   KQ++   G P+  S +VN     ++    I  P +++P       G  +   +
Sbjct: 126 AEDRDLFKQLMEELGQPIPESEIVNTVDEALEFAADIGYPVIVRPAFTLGGTGGGICSNE 185

Query: 148 QSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
           + +          +   Q LIE+ + G  E+   VM D + +   + V   + +     +
Sbjct: 186 EELQEIAENGLKLSPVTQCLIERSIAGFKEIEYEVMRDGADNA--LVVCNMENFDPVGIH 243

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
           +  +        I    Y+ ++  +    +A+   G        DP S K + +E+N  P
Sbjct: 244 TGDSIVFAPSQTISDYEYQMLRDASLKIIRALKIEGGCNVQLALDPHSFKYYVIEVN--P 301

Query: 267 GMTPVSIFPEMAAYAGYSFRELLLWM 292
            ++  S     +   GY   +L   +
Sbjct: 302 RVSRSS--ALASKATGYPIAKLAAKI 325


>gi|239787394|emb|CAX83870.1| Acetyl-/propionyl-coenzyme A carboxylase alpha chain [uncultured
           bacterium]
          Length = 668

 Score = 71.3 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 76/220 (34%), Gaps = 19/220 (8%)

Query: 58  LHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL-- 112
           +H  +G   E+           + +      A      K  SK++++  GVP+ P     
Sbjct: 79  IHPGYGFLSENADFAEAAIKAGLAFVGPTPHAMRAMGSKSESKRLMAKAGVPLVPGYHGT 138

Query: 113 --VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQL 166
              N         I  P +IK   GG   G+ ++ +   +   +     ++ +    D L
Sbjct: 139 DQSNAAIEREAGRIGFPVLIKASAGGGGKGMRIVTQQSELEPAIASARREAKASFGDDTL 198

Query: 167 LIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIY 224
           L+E+Y+     +   V  D   +   +           L+          PA  +   + 
Sbjct: 199 LVEKYLSRPRHVEIQVFADMQGNAVYL-----FERDCSLQRRHQKVIEEAPAPGLDPALR 253

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +   A  A +A+G  G    +FL D      +++E+N 
Sbjct: 254 ARMGEAAVAAAKAVGYLGAGTVEFLLDE-DGGFYFIEMNT 292


>gi|15606766|ref|NP_214146.1| biotin carboxylase [Aquifex aeolicus VF5]
 gi|2983981|gb|AAC07527.1| biotin carboxylase [Aquifex aeolicus VF5]
          Length = 444

 Score = 71.3 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 48/238 (20%), Positives = 88/238 (36%), Gaps = 15/238 (6%)

Query: 34  SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDK 93
           S +D+ R +   L   K D  +   +G   E+     I+E     +        A   DK
Sbjct: 59  SYLDIPR-IMSALEVSKADAVYPG-YGFLSENPKFAEIVEKSGAKFIGPRSEVLAKIGDK 116

Query: 94  MRSKQVVSSCGVPVCPSI---LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150
           + +K+V    G+P+ P     L     +     I  P VIK   GG   GI +I+ ++ +
Sbjct: 117 VLAKKVAKEVGLPLVPGSDEPLEFSEAVKLASKIGYPVVIKAAAGGGGRGIRIIRDEKEL 176

Query: 151 ----PLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205
               PL   ++ S     +L IE+Y ++   +   V+ D   +V  +   +        K
Sbjct: 177 REKFPLAKKEAESAFGDGRLYIEKYVINPKHIEFQVIADEHGNVYVLGERECSIQRRHQK 236

Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
                        +  +  KE+        + +G       +FL D      +++E+N
Sbjct: 237 ----LIEEAPSVSVSEEKRKEISEKVAEFCKRLGYTSAGTVEFLMDEEGN-FYFMEMN 289


>gi|332366727|gb|EGJ44468.1| carbamoyl-phosphate synthase, large subunit [Streptococcus
           sanguinis SK1059]
          Length = 1059

 Score = 71.3 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 23/224 (10%), Positives = 72/224 (32%), Gaps = 11/224 (4%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYV 129
           L    +    + +     + D+   +Q +    +P  P           ++   I  P +
Sbjct: 646 LSKAGVKILGTQVADLDRAEDRDLFEQALKELDIPQPPGQTATNEEEAVEAARKIGFPVL 705

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           ++P        + +++ +  +   +  +   +    +L++ Y+ G E     + D    +
Sbjct: 706 VRPSYVLGGRAMEIVENEADLRSYMRTAVKASPDHPVLVDSYIVGDECEVDAISDGRQVL 765

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
               +   +       +S  +     P  +   +   +          + C G+    F+
Sbjct: 766 IPGIMEHIERAGV---HSGDSMAAYPPQTLSQKVKDTIADYTKRLALGLNCIGMMNIQFV 822

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
                 +V+ +E+N +   T     P ++        ++   ++
Sbjct: 823 I--KDEQVYVIEVNPRASRT----VPFLSKVTDIPMAQVATRLI 860



 Score = 65.9 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 37/206 (17%), Positives = 78/206 (37%), Gaps = 9/206 (4%)

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147
           + D+   KQ++   G P+  S +VN     ++    I  P +++P       G  +   +
Sbjct: 126 AEDRDLFKQLMEELGQPIPESEIVNTVDEALEFAAGIGYPVIVRPAFTLGGTGGGICSNE 185

Query: 148 QSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
           + +          +   Q LIE+ + G  E+   VM D + +   + V   + +     +
Sbjct: 186 EELQEIAENGLKLSPVTQCLIERSIAGFKEIEYEVMRDGADNA--LVVCNMENFDPVGIH 243

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
           +  +        I    Y+ ++  +    +A+   G        DP S K + +E+N  P
Sbjct: 244 TGDSIVFAPSQTISDYEYQMLRDASLKIIRALKIEGGCNVQLALDPHSFKYYVIEVN--P 301

Query: 267 GMTPVSIFPEMAAYAGYSFRELLLWM 292
            ++  S     +   GY   +L   +
Sbjct: 302 RVSRSS--ALASKATGYPIAKLAAKI 325


>gi|332359676|gb|EGJ37493.1| carbamoyl-phosphate synthase, large subunit [Streptococcus
           sanguinis SK355]
          Length = 1059

 Score = 71.3 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 23/224 (10%), Positives = 72/224 (32%), Gaps = 11/224 (4%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYV 129
           L    +    + +     + D+   +Q +    +P  P           ++   I  P +
Sbjct: 646 LSKAGVKILGTQVADLDRAEDRDLFEQALKELDIPQPPGQTATNEEEAVEAARKIGFPVL 705

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           ++P        + +++ +  +   +  +   +    +L++ Y+ G E     + D    +
Sbjct: 706 VRPSYVLGGRAMEIVENEADLRSYMRTAVKASPDHPVLVDSYIVGDECEVDAISDGRQVL 765

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
               +   +       +S  +     P  +   +   +          + C G+    F+
Sbjct: 766 IPGIMEHIERAGV---HSGDSMAAYPPQTLSQKVKDTIADYTKRLALGLNCIGMMNIQFV 822

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
                 +V+ +E+N +   T     P ++        ++   ++
Sbjct: 823 I--KDEQVYVIEVNPRASRT----VPFLSKVTDIPMAQVATRLI 860



 Score = 65.9 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 37/206 (17%), Positives = 78/206 (37%), Gaps = 9/206 (4%)

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147
           + D+   KQ++   G P+  S +VN     ++    I  P +++P       G  +   +
Sbjct: 126 AEDRDLFKQLMEELGQPIPESEIVNTVDEALEFAAGIGYPVIVRPAFTLGGTGGGICSNE 185

Query: 148 QSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
           + +          +   Q LIE+ + G  E+   VM D + +   + V   + +     +
Sbjct: 186 EELQEIAENGLKLSPVTQCLIERSIAGFKEIEYEVMRDGADNA--LVVCNMENFDPVGIH 243

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
           +  +        I    Y+ ++  +    +A+   G        DP S K + +E+N  P
Sbjct: 244 TGDSIVFAPSQTISDYEYQMLRDASLKIIRALKIEGGCNVQLALDPHSFKYYVIEVN--P 301

Query: 267 GMTPVSIFPEMAAYAGYSFRELLLWM 292
            ++  S     +   GY   +L   +
Sbjct: 302 RVSRSS--ALASKATGYPIAKLAAKI 325


>gi|325690585|gb|EGD32588.1| carbamoyl-phosphate synthase, large subunit [Streptococcus
           sanguinis SK115]
          Length = 1059

 Score = 71.3 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 23/224 (10%), Positives = 72/224 (32%), Gaps = 11/224 (4%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYV 129
           L    +    + +     + D+   +Q +    +P  P           ++   I  P +
Sbjct: 646 LSKAGVKILGTQVADLDRAEDRDLFEQALKELDIPQPPGQTATNEEEAVEAARKIGFPVL 705

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           ++P        + +++ +  +   +  +   +    +L++ Y+ G E     + D    +
Sbjct: 706 VRPSYVLGGRAMEIVENEADLRSYMRTAVKASPDHPVLVDSYIVGDECEVDAISDGRQVL 765

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
               +   +       +S  +     P  +   +   +          + C G+    F+
Sbjct: 766 IPGIMEHIERAGV---HSGDSMAAYPPQTLSQKVKDTIADYTKRLALGLNCIGMMNIQFV 822

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
                 +V+ +E+N +   T     P ++        ++   ++
Sbjct: 823 I--KDEQVYVIEVNPRASRT----VPFLSKVTDIPMAQVATRLI 860



 Score = 65.9 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 37/206 (17%), Positives = 78/206 (37%), Gaps = 9/206 (4%)

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147
           + D+   KQ++   G P+  S +VN     ++    I  P +++P       G  +   +
Sbjct: 126 AEDRDLFKQLMEELGQPIPESEIVNTVDEALEFAAGIGYPVIVRPAFTLGGTGGGICSNE 185

Query: 148 QSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
           + +          +   Q LIE+ + G  E+   VM D + +   + V   + +     +
Sbjct: 186 EELQEIAENGLKLSPVTQCLIERSIAGFKEIEYEVMRDGADNA--LVVCNMENFDPVGIH 243

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
           +  +        I    Y+ ++  +    +A+   G        DP S K + +E+N  P
Sbjct: 244 TGDSIVFAPSQTISDYEYQMLRDASLKIIRALKIEGGCNVQLALDPHSFKYYVIEVN--P 301

Query: 267 GMTPVSIFPEMAAYAGYSFRELLLWM 292
            ++  S     +   GY   +L   +
Sbjct: 302 RVSRSS--ALASKATGYPIAKLAAKI 325


>gi|325135640|gb|EGC58257.1| acetyl-CoA carboxylase, biotin carboxylase [Neisseria meningitidis
           M0579]
          Length = 481

 Score = 71.3 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 79/222 (35%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---S 110
            +H  +G   E+      +E     +         L  DK+ +K  + + GVP  P    
Sbjct: 105 AVHPGYGFLAENADFAEQVEQSGFTFIGPKPDTIRLMGDKVSAKHAMIAAGVPCVPGSDG 164

Query: 111 ILVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
            L +     +     +  P +IK   GG   G+ V++K + +   +     ++ +     
Sbjct: 165 ALPDDGEEILKIADKVGYPVIIKASGGGGGRGMRVVEKKEDLLQSVEMTKAEAGAAFGNP 224

Query: 165 QLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+Y+     +   V+ D   +   +A           K          PA  I   
Sbjct: 225 MVYMERYLQRPRHVEIQVIADEHGNAIYLAERDCSMQRRHQK-----VIEEAPAPFITEK 279

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              ++      A + IG RG    +FL+     + F++E+N 
Sbjct: 280 ERAKIGNACADACKRIGYRGAGTFEFLY--EDGEFFFIEMNT 319


>gi|317140322|ref|XP_001818122.2| urea carboxylase [Aspergillus oryzae RIB40]
          Length = 1237

 Score = 71.3 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 30/239 (12%), Positives = 70/239 (29%), Gaps = 17/239 (7%)

Query: 38  VDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSK 97
           +D    + LA      A    +G   E+      +    + +             K  ++
Sbjct: 62  IDGDQIIKLAKRNHVDAIIPGYGFLSENADFARAIAKAGMVFAGPSPECIEAFGLKHTAR 121

Query: 98  QVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153
            + +  GVP+ P     +      +     +  P ++K   GG  +G++    +  +   
Sbjct: 122 DLATKAGVPIVPGSTGLVTSEEDAVKVAKDLGFPVMLKATAGGGGMGLLTCSSEDEVRES 181

Query: 154 LLQ-----SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS 208
                    + + +    +   Y     +   V G+       I   +        K   
Sbjct: 182 FATVRSRGEALFKNAGLFIERYYPSSHHIEVQVFGNGDGKAIAIGERECSIQRRHQK--- 238

Query: 209 LNSTHVLPAKI---PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
                  P+        + + +   A    ++I        ++L D  +   F+LE+N 
Sbjct: 239 --IIEECPSPFVTRNPGLRESLGDAAVRLAESIKYGSAGTIEYLVDDETGAFFFLEMNT 295


>gi|322419241|ref|YP_004198464.1| carbamoyl-phosphate synthase large subunit [Geobacter sp. M18]
 gi|320125628|gb|ADW13188.1| carbamoyl-phosphate synthase, large subunit [Geobacter sp. M18]
          Length = 1082

 Score = 71.3 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 50/278 (17%), Positives = 104/278 (37%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ GF+V  +         D D              +  ++   +PD    
Sbjct: 29  SGTQACKALKEEGFQVVLLNSNPATIMTDPDFADATYIEPVTPEVLAAIIEKERPDAVLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G    +  V       LE   +    + + A  ++ D+   K+ +   G+ +  S L
Sbjct: 89  TLGGQTALNTAVAVAENGTLEKFGVELIGAKLPAIKMAEDRTLFKEAMVRIGLDIPRSGL 148

Query: 113 VNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            + +   MD    +  P +I+P       G  +    +      +     +  D++L+E+
Sbjct: 149 AHNYQESMDVIKHVGFPAIIRPSFTLGGTGGGIAYNMEEYERMSMAGIEASPTDEILVEE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            + G  E    VM D + +V  +   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYELEVMRDTADNVVIVCSIEN----FDAMGVHTGDSITVAPAQTLTDKEYQIL 264

Query: 228 QRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RDASLKIIREIGVDTGGSNIQFGINPKNGRLIVIEMNP 302



 Score = 61.7 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 38/262 (14%), Positives = 96/262 (36%), Gaps = 27/262 (10%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH-----GNFGEDG---- 66
           AL + G++   +         D D S  L    L  +   N++      G   + G    
Sbjct: 598 ALSEDGYETIMVNCNPETVSTDYDTSDRLYFEPLTFEDVLNIVDVEKPTGVIVQFGGQTP 657

Query: 67  -LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ--HL 123
             +   LE   +P   +   A   + D+ R ++++    +    +     F         
Sbjct: 658 LKLAVALEKAGVPIIGTSPDAIDRAEDRERFQEMLQKLKLRQPENGTARSFEEAEAVAER 717

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVM 182
           I  P V++P        + ++    ++   +  +   +    +LI++++D  IE+    +
Sbjct: 718 IGYPVVVRPSYVLGGRAMEIVYDVDNLRRYMHTAVQASPEHPILIDKFLDEAIEIDVDAL 777

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D  + V    +   +       +S  ++  + P  I  +I +E++R   +    +  +G
Sbjct: 778 CDGKVAVIGGIMEHIEEAGI---HSGDSACSLPPYSISPEIVEEIRRQTKVMALELNVKG 834

Query: 243 ISRSDFLFDPLSRKVFWLEINV 264
           +   +  +   +  ++ +E+N 
Sbjct: 835 L--MNVQYAVKNDDIYIIEVNP 854


>gi|195978244|ref|YP_002123488.1| carbamoyl phosphate synthase large subunit [Streptococcus equi
           subsp. zooepidemicus MGCS10565]
 gi|195974949|gb|ACG62475.1| carbamoyl-phosphate synthase large chain CarB [Streptococcus equi
           subsp. zooepidemicus MGCS10565]
          Length = 1067

 Score = 71.3 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 26/225 (11%), Positives = 76/225 (33%), Gaps = 13/225 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL--ISPPYV 129
           L    +P   + +     + D+   ++ +   G+P  P           +    I  P +
Sbjct: 655 LTKAGVPILGTQLEDLDRAEDRKLFEKALKDLGIPQPPGKTATNEAEALEAARAIGFPVL 714

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           ++P        + +++ +  +   +  +   +    +LI+ Y+ G E     + D    +
Sbjct: 715 VRPSYVLGGRAMEIVENEDDLRSYMKTAVKASPEHPVLIDSYILGKECEVDAISDGQSVL 774

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               +   +           +S  V P + +   +  ++          + C G+    F
Sbjct: 775 IPGIMEHIERAGVHS----GDSMAVYPPQHLSKQVQDKIVDYTKRLAIGLNCIGMMNIQF 830

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    + +V+ +E+N +   T     P ++        ++   ++
Sbjct: 831 VI--QNEQVYVIEVNPRASRT----VPFLSKVTNIPMAQVATKLI 869



 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 45/268 (16%), Positives = 100/268 (37%), Gaps = 30/268 (11%)

Query: 25  ALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNVLHGNFG 63
           AL++ G++V  ++        D+ V                +L   +PD     L G  G
Sbjct: 45  ALKEEGYQVILVNSNPATIMTDKEVADKVYIEPLTLAFVSRILRKERPDALLPTLGGQTG 104

Query: 64  EDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFT 117
            +  ++     IL+ L +    + + A   + D+   KQ++   G P+  S +V      
Sbjct: 105 LNLAMELSKAGILQELGVELLGTTLSAIDQAEDRDLFKQLMKELGEPIPESEIVTTVEGA 164

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IE 176
           +   + I  P +++P       G  +   ++++   +      +   Q LIE+ + G  E
Sbjct: 165 ISFANAIGYPVIVRPAFTLGGTGGGICTNEEALRDIVENGLKLSPVTQCLIERSIAGFKE 224

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +   VM DA+ +   + V   + +     ++  +        +     + ++  +    +
Sbjct: 225 IEYEVMRDAADNA--LVVCSMENFDPVGIHTGDSIVFAPTQTLSDVENQLLRDASLRIIR 282

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINV 264
           A+   G        DP S   + +E+N 
Sbjct: 283 ALKIEGGCNVQLALDPNSFSYYVIEVNP 310


>gi|153003156|ref|YP_001377481.1| acetyl-CoA carboxylase, biotin carboxylase [Anaeromyxobacter sp.
           Fw109-5]
 gi|152026729|gb|ABS24497.1| acetyl-CoA carboxylase, biotin carboxylase [Anaeromyxobacter sp.
           Fw109-5]
          Length = 510

 Score = 71.3 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 40/219 (18%), Positives = 83/219 (37%), Gaps = 17/219 (7%)

Query: 58  LHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS---- 110
           +H  +G   E   +    E   I +      +      K  +++ +++ GVP  P     
Sbjct: 83  IHPGYGFLSEKAELARACEAAGITFVGPSAASMDAMGVKTTARRNMNAAGVPTVPGSEGP 142

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGDQL 166
           I   +        I  P +IK   GG   G+  ++++            +S++    D+L
Sbjct: 143 IADEQEAKAFADAIGYPVMIKAAAGGGGKGMKKVEREADFLSLWASARRESAAAFGDDRL 202

Query: 167 LIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
            +E+++D    +   V  D   +V  +   +      + K             +   + +
Sbjct: 203 YLEKFLDRPRHVEIQVFADEHGNVIHLGERECSIQRRQQK----VVEESPSCVLDERMRE 258

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + ++A  A +A+G RG    +FL D   R  ++LE+N 
Sbjct: 259 AMGQVAVRAAKAVGYRGAGTVEFLVDAQ-RDFYFLEMNT 296


>gi|58045578|gb|AAW65097.1| vancomycin resistance protein [Enterococcus casseliflavus]
          Length = 93

 Score = 71.3 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 23/89 (25%), Positives = 46/89 (51%), Gaps = 4/89 (4%)

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
             P   KP + GSS GI  +   + I   L ++ +  +   +L+++ + G+E+ CG++G+
Sbjct: 7   GFPVFFKPNEAGSSKGITKVTCVEEIAPALKEAFA--YCSAVLLQKNIAGVEIGCGILGN 64

Query: 185 ASLDVTEIAVPK--SDFYSYELKYSSLNS 211
            SL V         + F+ +E KY  +++
Sbjct: 65  DSLTVGACDAISLVNGFFDFEEKYQLISA 93


>gi|327489732|gb|EGF21522.1| carbamoyl-phosphate synthase, large subunit [Streptococcus
           sanguinis SK1058]
          Length = 1059

 Score = 71.3 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 23/224 (10%), Positives = 72/224 (32%), Gaps = 11/224 (4%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYV 129
           L    +    + +     + D+   +Q +    +P  P           ++   I  P +
Sbjct: 646 LSKAGVKILGTQVADLDRAEDRDLFEQALKELDIPQPPGQTATNEEEAVEAARKIGFPVL 705

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           ++P        + +++ +  +   +  +   +    +L++ Y+ G E     + D    +
Sbjct: 706 VRPSYVLGGRAMEIVENEADLRSYMRTAVKASPDHPVLVDSYIVGDECEVDAISDGRQVL 765

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
               +   +       +S  +     P  +   +   +          + C G+    F+
Sbjct: 766 IPGIMEHIERAGV---HSGDSMAAYPPQTLSQKVKDTIADYTKRLALGLNCIGMMNIQFV 822

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
                 +V+ +E+N +   T     P ++        ++   ++
Sbjct: 823 I--KDEQVYVIEVNPRASRT----VPFLSKVTDIPMAQVATRLI 860



 Score = 66.3 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 37/206 (17%), Positives = 78/206 (37%), Gaps = 9/206 (4%)

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147
           + D+   KQ++   G P+  S +VN     ++    I  P +++P       G  +   +
Sbjct: 126 AEDRDLFKQLMEELGQPIPESEIVNTVDEALEFAAEIGYPVIVRPAFTLGGTGGGICSNE 185

Query: 148 QSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
           + +          +   Q LIE+ + G  E+   VM D + +   + V   + +     +
Sbjct: 186 EELQEIAENGLKLSPVTQCLIERSIAGFKEIEYEVMRDGADNA--LVVCNMENFDPVGIH 243

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
           +  +        I    Y+ ++  +    +A+   G        DP S K + +E+N  P
Sbjct: 244 TGDSIVFAPSQTISDYEYQMLRDASLKIIRALKIEGGCNVQLALDPHSFKYYVIEVN--P 301

Query: 267 GMTPVSIFPEMAAYAGYSFRELLLWM 292
            ++  S     +   GY   +L   +
Sbjct: 302 RVSRSS--ALASKATGYPIAKLAAKI 325


>gi|327470856|gb|EGF16312.1| carbamoyl-phosphate synthase, large subunit [Streptococcus
           sanguinis SK330]
          Length = 1059

 Score = 71.3 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 23/224 (10%), Positives = 72/224 (32%), Gaps = 11/224 (4%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYV 129
           L    +    + +     + D+   +Q +    +P  P           ++   I  P +
Sbjct: 646 LSKAGVKILGTQVADLDRAEDRDLFEQALKELDIPQPPGQTATNEEEAVEAARKIGFPVL 705

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           ++P        + +++ +  +   +  +   +    +L++ Y+ G E     + D    +
Sbjct: 706 VRPSYVLGGRAMEIVENEADLRSYMRTAVKASPDHPVLVDSYIVGDECEVDAISDGRQVL 765

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
               +   +       +S  +     P  +   +   +          + C G+    F+
Sbjct: 766 IPGIMEHIERAGV---HSGDSMAAYPPQTLSQKVKDTIADYTKRLALGLNCIGMMNIQFV 822

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
                 +V+ +E+N +   T     P ++        ++   ++
Sbjct: 823 I--KDEQVYVIEVNPRASRT----VPFLSKVTDIPMAQVATRLI 860



 Score = 66.3 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 37/206 (17%), Positives = 78/206 (37%), Gaps = 9/206 (4%)

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147
           + D+   KQ++   G P+  S +VN     ++    I  P +++P       G  +   +
Sbjct: 126 AEDRDLFKQLMEELGQPIPESEIVNTVDEALEFAAEIGYPVIVRPAFTLGGTGGGICSNE 185

Query: 148 QSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
           + +          +   Q LIE+ + G  E+   VM D + +   + V   + +     +
Sbjct: 186 EELQEIAENGLKLSPVTQCLIERSIAGFKEIEYEVMRDGADNA--LVVCNMENFDPVGIH 243

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
           +  +        I    Y+ ++  +    +A+   G        DP S K + +E+N  P
Sbjct: 244 TGDSIVFAPSQTISDYEYQMLRDASLKIIRALKIEGGCNVQLALDPHSFKYYVIEVN--P 301

Query: 267 GMTPVSIFPEMAAYAGYSFRELLLWM 292
            ++  S     +   GY   +L   +
Sbjct: 302 RVSRSS--ALASKATGYPIAKLAAKI 325


>gi|301019783|ref|ZP_07183927.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli MS
           69-1]
 gi|300399070|gb|EFJ82608.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli MS
           69-1]
          Length = 623

 Score = 71.3 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 97/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D +              V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +    Q +LE   +    +   A   + D+ R    +   G+    S +
Sbjct: 89  TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGI 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     +     +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHTMEEALAVAADVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + +   +   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIEN----FDAMGIHTGDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RNASMAVLREIGVETGGSNVQFAVNPKNGRLIVIEMNP 302


>gi|167766419|ref|ZP_02438472.1| hypothetical protein CLOSS21_00924 [Clostridium sp. SS2/1]
 gi|317498303|ref|ZP_07956601.1| acetyl-CoA carboxylase [Lachnospiraceae bacterium 5_1_63FAA]
 gi|167711828|gb|EDS22407.1| hypothetical protein CLOSS21_00924 [Clostridium sp. SS2/1]
 gi|291560859|emb|CBL39659.1| biotin carboxylase /acetyl-CoA carboxylase carboxyltransferase
           subunit alpha [butyrate-producing bacterium SSC/2]
 gi|316894379|gb|EFV16563.1| acetyl-CoA carboxylase [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 448

 Score = 71.3 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 41/221 (18%), Positives = 79/221 (35%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  FG   E+     + +   I +            +K  +++ +   GVPV P    
Sbjct: 77  AIHPGFGFLSENADFVRLCKENGIAFIGPSAEVIDSMGNKSNARKTMMEAGVPVVPGTKE 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP-----LDLLQSSSWNHGD 164
            +            I  P +IK   GG   G+ V +  +             ++++   D
Sbjct: 137 PVYDAATGEKLADEIGYPVMIKASSGGGGKGMRVSRSKEDFEFNFNTAQRESANAFG-DD 195

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            + IE++++    +   +M D   +V  +            K    +     PA I   I
Sbjct: 196 TMYIEKFIENPRHVEIQIMADGHGNVVALGERDCSVQRNHQKLIEESP---SPA-ITEKI 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            K +   A LA +A+G       +F+ DP     +++E+N 
Sbjct: 252 RKSMNHDAILAAKAVGYTNAGTIEFILDPK-GTYYFMEMNT 291


>gi|187919396|ref|YP_001888427.1| carbamoyl-phosphate synthase L chain ATP-binding [Burkholderia
           phytofirmans PsJN]
 gi|187717834|gb|ACD19057.1| Carbamoyl-phosphate synthase L chain ATP-binding [Burkholderia
           phytofirmans PsJN]
          Length = 692

 Score = 71.3 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 81/221 (36%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       E   I +    + A A    K  +K ++ +  VP+ P    
Sbjct: 77  AVHPGYGFLSENEDFAHACEAAGIVFIGPPVEAIAAMGSKAAAKALMHTAAVPLVPGYHG 136

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
           +             I  P ++K   GG   G+ V+++ +     L     +++S    D+
Sbjct: 137 DDQDAQLLHREADAIGYPVLLKASAGGGGKGMRVVERSEDFEAALASCKREAASSFGNDR 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           +LIE+Y+     +   V  D       +           ++          PA  +  +I
Sbjct: 197 VLIEKYLTRPRHVEVQVFADRHGGAVYL-----FDRDCSVQRRHQKVLEEAPAPGLAAEI 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +E+   A  A +A+   G    +F+    +   +++E+N 
Sbjct: 252 KREMGDAAVAAARAVNYVGAGTVEFIMTG-TGDFYFMEMNT 291


>gi|29347325|ref|NP_810828.1| pyruvate carboxylase subunit A [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|253570427|ref|ZP_04847835.1| pyruvate carboxylase subunit A [Bacteroides sp. 1_1_6]
 gi|298385179|ref|ZP_06994738.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Bacteroides sp.
           1_1_14]
 gi|29339224|gb|AAO77022.1| pyruvate carboxylase subunit A [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|251839376|gb|EES67459.1| pyruvate carboxylase subunit A [Bacteroides sp. 1_1_6]
 gi|298262323|gb|EFI05188.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Bacteroides sp.
           1_1_14]
          Length = 503

 Score = 71.3 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 82/220 (37%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       +   I +            DK+ ++  +   GVPV P    
Sbjct: 77  AIHPGYGFLSENATFARRCQEENIIFIGPDPETMEAMGDKISARIKMIEAGVPVVPGTQE 136

Query: 114 NRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
           N  +++      + I  P ++K   GG   G+ +I   + +      + S +      D 
Sbjct: 137 NLKSVEEAVELCNKIGYPVMLKASMGGGGKGMRLIHSAEEVEEAYTTAKSESLSSFGDDT 196

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E++V+    +   ++GD   +V  +   +        K             +  ++ 
Sbjct: 197 VYLEKFVEEPHHIEFQILGDKHGNVIHLCERECSVQRRNQKI----VEETPSVFVTPELR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K++   A  A +A+   G    +FL D   R  ++LE+N 
Sbjct: 253 KDMGEKAVAAAKAVNYIGAGTIEFLVDKH-RNYYFLEMNT 291


>gi|332362145|gb|EGJ39947.1| carbamoyl-phosphate synthase, large subunit [Streptococcus
           sanguinis SK49]
          Length = 1059

 Score = 71.3 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 23/224 (10%), Positives = 72/224 (32%), Gaps = 11/224 (4%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYV 129
           L    +    + +     + D+   +Q +    +P  P           ++   I  P +
Sbjct: 646 LSKAGVKILGTQVADLDRAEDRDLFEQALKELDIPQPPGQTATNEEEAVEAARKIGFPVL 705

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           ++P        + +++ +  +   +  +   +    +L++ Y+ G E     + D    +
Sbjct: 706 VRPSYVLGGRAMEIVENEADLRSYMRTAVKASPDHPVLVDSYIVGDECEVDAISDGRQVL 765

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
               +   +       +S  +     P  +   +   +          + C G+    F+
Sbjct: 766 IPGIMEHIERAGV---HSGDSMAAYPPQTLSQKVKDTIADYTKRLALGLNCIGMMNIQFV 822

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
                 +V+ +E+N +   T     P ++        ++   ++
Sbjct: 823 I--KDEQVYVIEVNPRASRT----VPFLSKVTDIPMAQVATRLI 860



 Score = 66.3 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 37/206 (17%), Positives = 78/206 (37%), Gaps = 9/206 (4%)

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147
           + D+   KQ++   G P+  S +VN     ++    I  P +++P       G  +   +
Sbjct: 126 AEDRDLFKQLMEELGQPIPESEIVNTVDEALEFAAEIGYPVIVRPAFTLGGTGGGICSNE 185

Query: 148 QSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
           + +          +   Q LIE+ + G  E+   VM D + +   + V   + +     +
Sbjct: 186 EELQEIAENGLKLSPVTQCLIERSIAGFKEIEYEVMRDGADNA--LVVCNMENFDPVGIH 243

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
           +  +        I    Y+ ++  +    +A+   G        DP S K + +E+N  P
Sbjct: 244 TGDSIVFAPSQTISDYEYQMLRDASLKIIRALKIEGGCNVQLALDPHSFKYYVIEVN--P 301

Query: 267 GMTPVSIFPEMAAYAGYSFRELLLWM 292
            ++  S     +   GY   +L   +
Sbjct: 302 RVSRSS--ALASKATGYPIAKLAAKI 325


>gi|304384924|ref|ZP_07367270.1| carbamoyl-phosphate synthase large subunit [Pediococcus
           acidilactici DSM 20284]
 gi|304329118|gb|EFL96338.1| carbamoyl-phosphate synthase large subunit [Pediococcus
           acidilactici DSM 20284]
          Length = 819

 Score = 71.3 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 51/298 (17%), Positives = 108/298 (36%), Gaps = 45/298 (15%)

Query: 19  GKACASALE-DAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ-------- 69
             +    L+    F V+++ V+ ++  +L   + D+   V+    G  G +Q        
Sbjct: 50  ANSVIPQLDVPINFIVTELTVN-NLIQILREHEIDVILPVV----GNTGGLQLAEQLNES 104

Query: 70  AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPP 127
            IL+ L I              +     +V+     P+ P+ +V   +  +     +  P
Sbjct: 105 GILKELNIRTMGVTTTTIHNINNPELMNKVLRHIKEPIIPTTVVENEKNAVMFAKRVGFP 164

Query: 128 YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN--HGDQLLIEQYVDG---IELTC--- 179
            +IKP+   S      IK D    L  +  +++     +Q+ +E+ V G   IE+T    
Sbjct: 165 ILIKPIA--SLTKTNRIKCDNEHQLQEVLETAFKVSTTNQVAVEKSVVGYKEIEMTVIRD 222

Query: 180 ----GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
                ++ + + D+  I V   D   +    +  ++             +E++  A    
Sbjct: 223 AEGSKLLINGAEDLNPIGVHSGDSIIFSPTQTLTDTEF-----------QELRASALKIT 271

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           + +  +G+    +  DP + K F   IN        + F   A   GY    ++  ++
Sbjct: 272 EVLKIKGVCHVQYALDPTNGKYFVTRINPF--FDRTTAF--AARATGYPVATVVAEIL 325


>gi|218703293|ref|YP_002410812.1| carbamoyl phosphate synthase large subunit [Escherichia coli
           UMN026]
 gi|293403106|ref|ZP_06647203.1| carB [Escherichia coli FVEC1412]
 gi|298378634|ref|ZP_06988518.1| carbamoyl-phosphate synthase large subunit [Escherichia coli
           FVEC1302]
 gi|218430390|emb|CAR11257.1| carbamoyl-phosphate synthase large subunit [Escherichia coli
           UMN026]
 gi|291430021|gb|EFF03035.1| carB [Escherichia coli FVEC1412]
 gi|298280968|gb|EFI22469.1| carbamoyl-phosphate synthase large subunit [Escherichia coli
           FVEC1302]
          Length = 1072

 Score = 71.3 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 97/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D +              V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +    Q +LE   +    +   A   + D+ R    +   G+    S +
Sbjct: 89  TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGI 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     +     +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHTMEEALAVAADVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + +   +   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIEN----FDAMGIHTGDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RNASMAVLREIGVETGGSNVQFAVNPKNGRLIVIEMNP 302



 Score = 60.5 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 29/197 (14%), Positives = 74/197 (37%), Gaps = 10/197 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           LE   +P   +   A   + D+ R +  V    +    +  V      ++    I  P V
Sbjct: 653 LEAAGVPVIGTSPDAIDRAEDRERFQHAVERLKLKQPANATVTTIEMAVEKAKEIGYPLV 712

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  +  +      + S ++   +L++ ++ D +E+    + D  + 
Sbjct: 713 VRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDDAVEVDVDAICDGEMV 772

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           +    +   +    +    S +S   LPA  +  +I   +++        +  RG+    
Sbjct: 773 LIGGIMEHIE----QAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRGLMNVQ 828

Query: 248 FLFDPLSRKVFWLEINV 264
           F     + +V+ +E+N 
Sbjct: 829 FAV--KNNEVYLIEVNP 843


>gi|261404802|ref|YP_003241043.1| phosphoribosylaminoimidazole carboxylase, ATPase subunit
           [Paenibacillus sp. Y412MC10]
 gi|261281265|gb|ACX63236.1| phosphoribosylaminoimidazole carboxylase, ATPase subunit
           [Paenibacillus sp. Y412MC10]
          Length = 395

 Score = 71.3 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 39/207 (18%), Positives = 84/207 (40%), Gaps = 17/207 (8%)

Query: 65  DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQH 122
           D  V  +LE  E  Y   G      +  ++R K  + + GVPV P   +      + +  
Sbjct: 91  DAGVAQLLE--EQSYVPQGSKLLYTTQHRLREKAAIEAAGVPVAPYREITSLEDLLSAAS 148

Query: 123 LISPPYVIKPLKGG-SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
            +  P V+K   GG    G  V++ +  +     + ++   G +L++E++V        V
Sbjct: 149 ELGLPCVLKTATGGYDGKGQAVLRSEDELESAYKELAA--SGTELVLEKFVK-FACEISV 205

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTH--VLPAKIPLDIYKEVQRLAFLAHQAIG 239
           +   +      + P ++           N  H  ++PA++P ++ ++  +LA    + +G
Sbjct: 206 IAARTPSGIVKSFPPAENV------HVNNILHLSIVPARVPSEVKRKACQLAERVAEGLG 259

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQP 266
             G+   +        ++F  E+  +P
Sbjct: 260 AVGLLAVEMFVTE-EGELFVNELAPRP 285


>gi|220917010|ref|YP_002492314.1| phosphoribosylglycinamide formyltransferase 2 [Anaeromyxobacter
           dehalogenans 2CP-1]
 gi|219954864|gb|ACL65248.1| phosphoribosylglycinamide formyltransferase 2 [Anaeromyxobacter
           dehalogenans 2CP-1]
          Length = 387

 Score = 71.3 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 45/247 (18%), Positives = 92/247 (37%), Gaps = 26/247 (10%)

Query: 33  VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
           VS +D   ++  ++A  +PD+    +     E   +QA  E   +    S   A+     
Sbjct: 49  VSMLD-GAALDALVAKHRPDVIVPEIEAIRTE--RLQAY-EAQGVQVVPSARAAAVTMNR 104

Query: 93  KMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150
           +          G+        +       +   I  P V+KPL   S  G  V++ +  +
Sbjct: 105 RAIRDLAARELGLATARYAYASTPEAFRTAVREIGLPCVVKPLMSSSGKGQSVVRAEGDM 164

Query: 151 PLDLLQSSSWNHGD--QLLIEQYVDGIE----LTCGVMGDASLDVTEIAVPKSDFYSYEL 204
                 + S   GD  ++++E+++        LT       +L    I   + +   Y+ 
Sbjct: 165 EAAWAYAMSGTRGDLREVIVEEFISFESEITLLTVTQRRGETLFCPPIG-HRQERGDYQE 223

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +         P  +P  + +E +R+A    +A+G  GI   +        +V++ E++ 
Sbjct: 224 SW--------QPHPVPAPLLEEARRMAAAVTRALGGAGIFGVELFLGK--DRVWFSELSP 273

Query: 265 QP---GM 268
           +P   GM
Sbjct: 274 RPHDTGM 280


>gi|124024704|ref|YP_001019011.1| phosphoribosylglycinamide formyltransferase 2 [Prochlorococcus
           marinus str. MIT 9303]
 gi|123964990|gb|ABM79746.1| GAR transformylase 2 [Prochlorococcus marinus str. MIT 9303]
          Length = 393

 Score = 71.3 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 38/246 (15%), Positives = 93/246 (37%), Gaps = 28/246 (11%)

Query: 32  KVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAI--LELLEIPYTHSGILASAL 89
           +V  ++   ++  ++ H +PD+    +         V A+  LE   I        A+A+
Sbjct: 51  EVLDMNNSEALTAIIRHHQPDVVIPEIEAL-----AVNALAELENEGITVI-PTARATAV 104

Query: 90  SMDKMRSKQVV-SSCGVPVCPSILVNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           +M++ R + +      +                +   +  P V+KP+   S  G  V+  
Sbjct: 105 TMNRDRIRDLASEELALLTPKFAYAGSAEELRHAAEPLGWPVVVKPVMSSSGKGQSVVSN 164

Query: 147 DQSIPLD--LLQSSSWNHGDQLLIEQYVDGIELTCGVM----GDASLDVTEIAVPKSDFY 200
            + +        + S  +  ++++E+++   +L   ++     D S    E    +    
Sbjct: 165 PEGLRQAWQAAMAGSRGNSPRVIVEEFLH-FDLEITLLTIRQEDGSTLFCEPIGHEQIGG 223

Query: 201 SYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260
            Y+  +         PA++  +  K+ Q +A    + +G  G+   +F       +V + 
Sbjct: 224 DYQCSW--------QPAELSTEQLKQAQSMALSITENLGGVGLFGVEFFL--CGNEVIFS 273

Query: 261 EINVQP 266
           E++ +P
Sbjct: 274 ELSPRP 279


>gi|83952245|ref|ZP_00960977.1| propionyl-CoA carboxylase, alpha subunit [Roseovarius nubinhibens
           ISM]
 gi|83837251|gb|EAP76548.1| propionyl-CoA carboxylase, alpha subunit [Roseovarius nubinhibens
           ISM]
          Length = 681

 Score = 71.3 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 73/221 (33%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      L    + +    + A     DK+ SK++     V   P  + 
Sbjct: 77  AVHPGYGFLSENSKFAEALAAEGVAFVGPPVGAIESMGDKITSKKIAQEADVSTVPGYMG 136

Query: 114 NRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGD 164
                D        I  P +IK   GG   G+ +   D+             ++S+   D
Sbjct: 137 LIADADEAVKISGEIGYPVMIKASAGGGGKGMRIAWNDEEAREGFQSSKNEAANSFG-DD 195

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           ++ IE++V     +   V+ D+  +   +   +        K             +    
Sbjct: 196 RIFIEKFVTQPRHIEIQVLCDSHGNGIYLGERECSIQRRNQK----VIEEAPSPFLDEAT 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +   A     A+G       +F+ D   +  ++LE+N 
Sbjct: 252 RRAMGEQAVALAHAVGYASAGTVEFIVDG-DKNFYFLEMNT 291


>gi|332686079|ref|YP_004455853.1| biotin carboxylase of acetyl-CoA carboxylase [Melissococcus
           plutonius ATCC 35311]
 gi|332370088|dbj|BAK21044.1| biotin carboxylase of acetyl-CoA carboxylase [Melissococcus
           plutonius ATCC 35311]
          Length = 459

 Score = 71.3 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 80/220 (36%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  FG   E+    ++ E   I +            +K  +++++    VPV P    
Sbjct: 77  AIHPGFGFLSENSQFASMCEECNITFIGPKAETIDAMGNKTNARRLMIEADVPVTPGSKG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSS-SWNHGD 164
            I      +     I  P ++K  +GG   GI  I  ++ +    P    ++  S+++ D
Sbjct: 137 TIHSTEEALKVAKDIGYPVMLKAAEGGGGKGIRRIYSEEDLIQHFPAAQQEARVSFDNDD 196

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             L +       +   ++GD   +V  +            K    + + +    I     
Sbjct: 197 MYLEKIIYPARHIEVQILGDKYGNVIHLGERDCSLQRNNQKVLEESPSPI----ISQKER 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + + + A  A +A+        +FL D   +  +++E+N 
Sbjct: 253 EILGKTAVKAAKAVHYGSTGTIEFLMDT-DKNFYFMEMNT 291


>gi|171769888|sp|A2CE36|PURT_PROM3 RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
          Length = 392

 Score = 71.3 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 38/246 (15%), Positives = 93/246 (37%), Gaps = 28/246 (11%)

Query: 32  KVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAI--LELLEIPYTHSGILASAL 89
           +V  ++   ++  ++ H +PD+    +         V A+  LE   I        A+A+
Sbjct: 50  EVLDMNNSEALTAIIRHHQPDVVIPEIEAL-----AVNALAELENEGITVI-PTARATAV 103

Query: 90  SMDKMRSKQVV-SSCGVPVCPSILVNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           +M++ R + +      +                +   +  P V+KP+   S  G  V+  
Sbjct: 104 TMNRDRIRDLASEELALLTPKFAYAGSAEELRHAAEPLGWPVVVKPVMSSSGKGQSVVSN 163

Query: 147 DQSIPLD--LLQSSSWNHGDQLLIEQYVDGIELTCGVM----GDASLDVTEIAVPKSDFY 200
            + +        + S  +  ++++E+++   +L   ++     D S    E    +    
Sbjct: 164 PEGLRQAWQAAMAGSRGNSPRVIVEEFLH-FDLEITLLTIRQEDGSTLFCEPIGHEQIGG 222

Query: 201 SYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260
            Y+  +         PA++  +  K+ Q +A    + +G  G+   +F       +V + 
Sbjct: 223 DYQCSW--------QPAELSTEQLKQAQSMALSITENLGGVGLFGVEFFL--CGNEVIFS 272

Query: 261 EINVQP 266
           E++ +P
Sbjct: 273 ELSPRP 278


>gi|315282222|ref|ZP_07870676.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Listeria
           marthii FSL S4-120]
 gi|313614124|gb|EFR87814.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Listeria
           marthii FSL S4-120]
          Length = 454

 Score = 71.3 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 81/220 (36%), Gaps = 16/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     + E   I +      A +    K  +++ +   GVP+ P    
Sbjct: 77  AIHPGYGFLAENADFAELCEDCNITFIGPSAAAISQMGTKDVARETMRKAGVPIVPGSQG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGDQ 165
            +            I  P +IK   GG   GI V + ++ +   +     ++ +      
Sbjct: 137 IVADVEDGKKIAKKIGYPVIIKATAGGGGKGIRVAENEEKLVSGIHTTQQEAEAAFGDPG 196

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+Y+     +   V+ D   +V  +            K    + +   PA I     
Sbjct: 197 VYLEKYIQDFRHVEIQVLADNHGNVIHLGERDCSIQRRLQKLIEESPS---PA-IDEKTR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +++ + A  A +A+   G    +F++D      +++E+N 
Sbjct: 253 QKMGKAAVKAAKAVNYSGAGTIEFIYDHHENNFYFMEMNT 292


>gi|167573905|ref|ZP_02366779.1| carbamoyl-phosphate synthase L chain/biotin carboxylase
           [Burkholderia oklahomensis C6786]
          Length = 668

 Score = 71.3 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 83/220 (37%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      +    + +      A     DK R+++ +++ G+PV P    
Sbjct: 81  AIHPGYGFLSENAAFARRVADAGLVFVGPRADAIDAMGDKARARRRMAAAGIPVVPGYDG 140

Query: 114 NRFT----MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
           +       +     I  P ++K   GG   G+  +    ++P  L  + S         +
Sbjct: 141 DDQNEARILAEAERIGFPVMLKASAGGGGRGMRRVDTRDALPAALKLAVSEAQKAFGDGR 200

Query: 166 LLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           +++E+  ++   +   +  DA   V  +        S + ++  +      PA +   + 
Sbjct: 201 MIVERAVIEPRHVEVQIFADAHGHVVHLGERD---CSVQRRHQKIVEEAPSPA-VDAALR 256

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +   A  A + IG  G    +FL D    + +++E+N 
Sbjct: 257 ARLGATAVAAAREIGYVGAGTVEFLLD-RDGQFYFMEMNT 295


>gi|167566835|ref|ZP_02359751.1| carbamoyl-phosphate synthase L chain/biotin carboxylase
           [Burkholderia oklahomensis EO147]
          Length = 668

 Score = 71.3 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 83/220 (37%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      +    + +      A     DK R+++ +++ G+PV P    
Sbjct: 81  AIHPGYGFLSENAAFARRVADAGLVFVGPRADAIDAMGDKARARRRMAAAGIPVVPGYDG 140

Query: 114 NRFT----MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
           +       +     I  P ++K   GG   G+  +    ++P  L  + S         +
Sbjct: 141 DDQNEARILAEAERIGFPVMLKASAGGGGRGMRRVDTRDALPAALKLAVSEAQKAFGDGR 200

Query: 166 LLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           +++E+  ++   +   +  DA   V  +        S + ++  +      PA +   + 
Sbjct: 201 MIVERAVIEPRHVEVQIFADAHGHVVHLGERD---CSVQRRHQKIVEEAPSPA-VDAALR 256

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +   A  A + IG  G    +FL D    + +++E+N 
Sbjct: 257 ARLGATAVAAAREIGYVGAGTVEFLLD-RDGQFYFMEMNT 295


>gi|52549390|gb|AAU83239.1| carbamoyl-phosphate synthase large subunit [uncultured archaeon
           GZfos27B6]
          Length = 1090

 Score = 71.3 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 63/314 (20%), Positives = 113/314 (35%), Gaps = 51/314 (16%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G++V  +         D               +V  ++A  +PD    
Sbjct: 50  SGTQACKALKEEGYEVVLVNSNPATIMTDPGMADQTYIEPLTVENVEEIIAKERPDALLP 109

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC---P 109
            L G  G +       + IL    +        A     D++  K+ ++   + +    P
Sbjct: 110 NLGGQTGLNLSAELSKRGILAKYGVELIGVEADAIERGEDRIVFKETMTKLDISMPESSP 169

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
           +  V      +Q  +  P VI+P       G  ++   + +   + +  S +   Q+L+E
Sbjct: 170 AYSVEEAEEIAQE-LGYPVVIRPAYTMGGTGGGIVYNVEELKTIVTRGISASLIGQVLVE 228

Query: 170 QYVDG-IELTCGVMGDASL-DVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKE 226
           + V G  EL   V+ D     +T   +   D           +S  V P   I  ++ ++
Sbjct: 229 ESVLGWEELELEVIRDKKGNKITVCFIENVDPMGVHT----GDSFCVAPMLTIGEELQRK 284

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI--------FPEM- 277
           +Q L++    AIG  G +   F  +P   +V  +EIN +   T  S         FP   
Sbjct: 285 LQELSYRIVDAIGVLGGTNIQFAHNPEDGRVVVIEINPR---TSRSSALASKATGFPIAR 341

Query: 278 --AA-YAGYSFREL 288
             A    G +  EL
Sbjct: 342 ISAKLAVGITLDEL 355



 Score = 54.0 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 24/196 (12%), Positives = 68/196 (34%), Gaps = 8/196 (4%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           L    +    +   +  L+ D+   ++++    +P             +     I  P +
Sbjct: 668 LHEAGVKILGTSPDSIHLAEDRELFREMMIKLSIPQPEGGTARSVEEALAVARKIGFPVM 727

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLD 188
           ++P       G+ ++  ++ +      +   +    +LI+++++  IE     + D S  
Sbjct: 728 VRPSFVLGGRGMEIVYDEKMLLDYAKAAVDVSPEYPMLIDKFLEHAIETEVDAIADGSDV 787

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                +   +       +S  ++  + P  I      +++        A+   G+   + 
Sbjct: 788 YIAAVMEHIELAGV---HSGDSACVIPPRNISKGNLAKIEDYTKKIADALEVVGL--MNI 842

Query: 249 LFDPLSRKVFWLEINV 264
            +   + KV+ LE N 
Sbjct: 843 QYAIANGKVYILEANP 858


>gi|17549161|ref|NP_522501.1| acetyl-CoA carboxylase biotin carboxylase subunit [Ralstonia
           solanacearum GMI1000]
 gi|17431412|emb|CAD18091.1| putative biotin carboxylase protein [Ralstonia solanacearum
           GMI1000]
          Length = 455

 Score = 71.3 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 78/222 (35%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--I 111
            +H  +G   E+    A +    + +            DK+ +K+ +   GVP  P    
Sbjct: 77  AIHPGYGFLSENAGFVARVTDAGLTFIGPSADCIRTMGDKVSAKRAMREAGVPCVPGPDT 136

Query: 112 LVNRFTMDS---QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
            +     +     H I  P ++K   GG   G+ V+ +  ++   L     ++       
Sbjct: 137 SLPEDPAEVLAIAHGIGFPVIVKAAGGGGGRGMRVVHEASALADALALTREEARRAFGNP 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
           ++ IE+++     +   V+ D       +           L+          PA  I   
Sbjct: 197 EVYIEKFLTHPRHVEIQVLADRYGHAVWL-----GSRDCSLQRRHQKVIEEAPAPGIDAS 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +  EV      A + IG  G+   +FL+   +   +++E+N 
Sbjct: 252 LIAEVGERCAAACRQIGYCGVGTFEFLY--ENGAFYFIEMNT 291


>gi|332762592|gb|EGJ92857.1| carbamoyl-phosphate synthase large chain [Shigella flexneri
           4343-70]
          Length = 1073

 Score = 71.3 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 97/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D +              V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +    Q +LE   +    +   A   + D+ R    +   G+    S +
Sbjct: 89  TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGI 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     +     +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHTMEEALAVAADVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + +   +   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIEN----FDAMGIHTGDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RNASMAVLREIGVETGGSNVQFAVNPKNGRLIVIEMNP 302



 Score = 60.1 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 30/197 (15%), Positives = 74/197 (37%), Gaps = 10/197 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYV 129
           LE   +P   +   A   + D+ R +  V    +    +  V    M  +    I  P V
Sbjct: 654 LEAAGVPVIGTSPDAIDRAEDRERFQHAVDRLKLKQPANATVTAIEMAVEKAKEIGYPLV 713

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  +  +      + S ++   +L++ ++ D +E+    + D  + 
Sbjct: 714 VRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDDAVEVDVDAICDGEMV 773

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           +    +   +    +    S +S   LPA  +  +I   +++        +  RG+    
Sbjct: 774 LIGGIMEHIE----QAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRGLMNVQ 829

Query: 248 FLFDPLSRKVFWLEINV 264
           F     + +V+ +E+N 
Sbjct: 830 FAV--KNNEVYLIEVNP 844


>gi|309782464|ref|ZP_07677188.1| carbamoyl-phosphate synthase, large subunit [Ralstonia sp.
           5_7_47FAA]
 gi|308918801|gb|EFP64474.1| carbamoyl-phosphate synthase, large subunit [Ralstonia sp.
           5_7_47FAA]
          Length = 1081

 Score = 71.3 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 28/198 (14%), Positives = 74/198 (37%), Gaps = 8/198 (4%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQHLISPPYV 129
           LE   +P   +       + D+ R ++++ S G+   P+         +     I  P V
Sbjct: 658 LEANGVPIIGTSPDMIDAAEDRERFQKLLHSLGLRQPPNRTARAEDEALKLAEEIGYPLV 717

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++ + + +   + ++   ++   +L+++++ D IE     + D    
Sbjct: 718 VRPSYVLGGRAMEIVHEPRDLERYMREAVKVSNDSPVLLDRFLNDAIECDVDCLSDGKRV 777

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                +   +       +S  ++  + P  +      E++R      +A+   G+    F
Sbjct: 778 FIGGVMEHIEQAGV---HSGDSACSLPPYSLSQATVDELKRQTAAMAKALNVVGLMNVQF 834

Query: 249 LFDPLSRK--VFWLEINV 264
                  +  V+ LE+N 
Sbjct: 835 AIQQKGGEDIVYVLEVNP 852



 Score = 62.8 bits (152), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 49/285 (17%), Positives = 96/285 (33%), Gaps = 42/285 (14%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + GFKV  +              DV          V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGFKVVLVNSNPATIMTDPNTADVTYIEPITWEVVERIIAKERPDAILP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G    +  +      +L+   +    +   A   + D+ + K  ++  G+    S  
Sbjct: 89  TMGGQTALNCALDLHRHGVLKKYNVELIGASPEAIDKAEDRQKFKDAMTKIGLGSAKSGI 148

Query: 111 -------ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
                  + V             P VI+P       G  +    +       +    +  
Sbjct: 149 AHSMDEAVAVQSQIAKETGTSGYPIVIRPSFTLGGTGGGIAYNREEFEEICKRGLDLSPT 208

Query: 164 DQLLIEQYVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IP 220
           ++LLIE+ + G  E    V+ D + + +   ++   D           +S  V PA+ + 
Sbjct: 209 NELLIEESLLGWKEYEMEVVRDRADNCIIVCSIENLDPMGIHT----GDSITVAPAQTLT 264

Query: 221 LDIYKEVQRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
              Y+ ++  +    + IG   G S   F  +P   ++  +E+N 
Sbjct: 265 DKEYQILRNASLAVLREIGVDTGGSNVQFSINPKDGRMIVIEMNP 309


>gi|290968205|ref|ZP_06559748.1| carbamoyl-phosphate synthase, large subunit [Megasphaera genomosp.
           type_1 str. 28L]
 gi|290781687|gb|EFD94272.1| carbamoyl-phosphate synthase, large subunit [Megasphaera genomosp.
           type_1 str. 28L]
          Length = 1068

 Score = 71.3 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 47/286 (16%), Positives = 103/286 (36%), Gaps = 33/286 (11%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQID-------VDRSVG--------------LV 45
           G ++E + +   G     AL++ G +V  I+        D  +                V
Sbjct: 19  GQAAEFDYA---GTQACRALKEEGVEVVLINSNPATIMTDEDIADRVYVEPISLEYVTAV 75

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   +PD     L G  G +  V+     +L+  ++    + + A   + D+   K+ + 
Sbjct: 76  IKKERPDGLLATLGGQVGLNMAVELSRAGVLKTYDVTLLGTDLAAIQEAEDRELFKKAMK 135

Query: 102 SCGVPVCPSILVNR--FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
               PV  S +V      +D    I  P +++P       G  +   ++ +     +   
Sbjct: 136 DIDQPVAESDIVEDVSSALDFARTIGYPIIVRPAYTLGGTGGGIAYTEEELAAIAARGIK 195

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   Q+L+E+ V G  E+   VM D + +   I V   +       ++  +        
Sbjct: 196 LSPIHQILVERSVAGWKEIEYEVMRDKADN--CIIVCNMENIDPVGVHTGDSIVVAPSQT 253

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +    Y+ ++  +    + +   G     +  DP S + + +E+N 
Sbjct: 254 LNDLQYQMLRTASLKIIRRLKIEGGCNVQYALDPKSNRYYVIEVNP 299



 Score = 66.3 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 23/195 (11%), Positives = 72/195 (36%), Gaps = 15/195 (7%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYVIKPL 133
            +    + +     + D+ R  ++++   +P     +    T        +  P +++P 
Sbjct: 648 GVAILGTSVDGMDRAEDRERFDELLAKLHIPRPDGRIATSDTEAMRVAKELQFPLIVRPS 707

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS---LDVT 190
                  + ++  +  +   L ++   +    +LI++Y+ G E+    + D +   +   
Sbjct: 708 YVLGGRAMEIVYNESELERYLREAVIASPDHPILIDEYMVGREIEVDAVADGTDVYIPGI 767

Query: 191 EIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
              V ++  +S        +S  V P + +  ++  ++          +  +G    +  
Sbjct: 768 MEQVERAGVHS-------GDSIAVYPPQHVTQEMTAQIVDYTTRIALELQVKGA--VNMQ 818

Query: 250 FDPLSRKVFWLEINV 264
           F   + K++ +E+N 
Sbjct: 819 FVVAAGKLYVIEVNP 833


>gi|259418294|ref|ZP_05742212.1| biotin carboxylase [Silicibacter sp. TrichCH4B]
 gi|259345689|gb|EEW57533.1| biotin carboxylase [Silicibacter sp. TrichCH4B]
          Length = 435

 Score = 71.3 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 79/220 (35%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E       +E   + +            DK+ ++Q   + GVPV P    
Sbjct: 78  AIHPGYGFLSESPAFVRAVEASGLIFVGPSADTIERMGDKVAARQAAEAAGVPVVPGSDG 137

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGDQ 165
            +      +     I  P +IK   GG   GI V K  + +    P    ++ +      
Sbjct: 138 RVESVAEAVTIAEQIGFPVMIKAAAGGGGRGIRVAKTVEELKSLAPQAKAEAEAAFGDGG 197

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           L +E+ +     +   ++GD    V       S     +  +    +T      +  +  
Sbjct: 198 LYVERAILSPRHIEVQILGDGETAVHCFERECSLQRRRQKVWEEAGAT-----CLDEETR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +   A    +A+  RG    ++LFD  + + F++E+N 
Sbjct: 253 EALCASAVALAKAVNYRGAGTLEYLFDEAANEFFFIEMNT 292


>gi|302557830|ref|ZP_07310172.1| ATP-grasp domain-containing protein [Streptomyces griseoflavus
           Tu4000]
 gi|302475448|gb|EFL38541.1| ATP-grasp domain-containing protein [Streptomyces griseoflavus
           Tu4000]
          Length = 418

 Score = 71.3 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 36/228 (15%), Positives = 87/228 (38%), Gaps = 25/228 (10%)

Query: 58  LHGNFGEDGLVQA--------ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109
           LH   G DG++ +         L    +        A   +  K  +++V++  GVP   
Sbjct: 75  LHAVLGFDGVLTSCDYYLPTVALTAARLGLPGPPPEAVGNACRKDATRRVLADAGVPGPR 134

Query: 110 SILVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW------- 160
             +   ++    +   I  P V+KP+   + + +  +  ++ +   +   + +       
Sbjct: 135 FAVHEEWSRIAAAAREIGYPLVVKPVDLCAGMFVRRVDDEEQLASCVAALAGFPVNARGQ 194

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
                +L+E+ +DG E++     +       + V      S     + + + H+ PA +P
Sbjct: 195 RRAPAVLLEELLDGPEVSV----ETVSHAGAVQVVGVTDKSVGGAPAFIETGHMFPAALP 250

Query: 221 LDIYKEVQRLAFLAHQAIGCRG--ISRSDFLFDPLSRKVFWLEINVQP 266
               +  ++ A  A +A+G     ++ ++        +V   E+N +P
Sbjct: 251 AGDAEAAEQTALGALKALGLTDGVVAHTEIKLTSAGPRVV--EVNPRP 296


>gi|255021067|ref|ZP_05293120.1| Phosphoribosylglycinamide formyltransferase 2 [Acidithiobacillus
           caldus ATCC 51756]
 gi|254969481|gb|EET26990.1| Phosphoribosylglycinamide formyltransferase 2 [Acidithiobacillus
           caldus ATCC 51756]
          Length = 395

 Score = 71.3 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 28/177 (15%), Positives = 63/177 (35%), Gaps = 18/177 (10%)

Query: 97  KQVVSSCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154
           +      G+P  P    +       +   +  P V+KP+   S  G  V+     + +  
Sbjct: 121 RLAAEDLGLPTSPYAFADSREGLQAAADALGFPCVVKPVMSSSGKGQSVVHSAADLAVAW 180

Query: 155 LQSSSWNH--GDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP---KSDFYSYELKYSSL 209
             + +     G ++++E +V+  +    ++   S   T    P   + +   Y   +   
Sbjct: 181 ETARAAGRVAGQRVIVEAFVE-FDFEITLLTIRSASGTHFCPPIGHRQEAGDYVESW--- 236

Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
                 P  +  +  K  Q +A      +G RG+   +F       +V + E++ +P
Sbjct: 237 -----QPQAMSPEALKRAQEMARAVTDDLGGRGLFGVEFFVR--GDEVLFSELSPRP 286


>gi|254037449|ref|ZP_04871526.1| carbamoyl-phosphate synthase large subunit [Escherichia sp. 1_1_43]
 gi|226840555|gb|EEH72557.1| carbamoyl-phosphate synthase large subunit [Escherichia sp. 1_1_43]
          Length = 1073

 Score = 71.3 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 97/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D +              V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +    Q +LE   +    +   A   + D+ R    +   G+    S +
Sbjct: 89  TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGI 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     +     +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHTMEEALAVAADVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + +   +   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIEN----FDAMGIHTGDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RNASMAVLREIGVETGGSNVQFAVNPKNGRLIVIEMNP 302



 Score = 60.5 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 30/197 (15%), Positives = 74/197 (37%), Gaps = 10/197 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYV 129
           LE   +P   +   A   + D+ R +  V    +    +  V    M  +    I  P V
Sbjct: 654 LEAAGVPVIGTSPDAIDRAEDRERFQHAVERLKLKQPANATVTAIEMAVEKAKEIGYPLV 713

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  +  +      + S ++   +L++ ++ D +E+    + D  + 
Sbjct: 714 VRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDDAVEVDVDAICDGEMV 773

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           +    +   +    +    S +S   LPA  +  +I   +++        +  RG+    
Sbjct: 774 LIGGIMEHIE----QAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRGLMNVQ 829

Query: 248 FLFDPLSRKVFWLEINV 264
           F     + +V+ +E+N 
Sbjct: 830 FAV--KNNEVYLIEVNP 844


>gi|194858260|ref|XP_001969139.1| GG25254 [Drosophila erecta]
 gi|190661006|gb|EDV58198.1| GG25254 [Drosophila erecta]
          Length = 1197

 Score = 71.3 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 32/205 (15%), Positives = 80/205 (39%), Gaps = 17/205 (8%)

Query: 69  QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLI 124
           QA+++   + +            DK+ ++      GVP+ P     +      ++     
Sbjct: 131 QAVID-AGLRFIGPSPEVVQKMGDKVAARVAAIEAGVPIVPGTDGPVTTKEEAVEFCKKH 189

Query: 125 SPPYVIKPLKGGSSLGIIVIKK----DQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTC 179
             P + K   GG   G+ V++K    ++S      ++ +      + IE++++    +  
Sbjct: 190 GLPVIFKAAYGGGGRGMRVVRKMEDVEESFQRASSEAKAAFGNGAMFIEKFIERPRHIEV 249

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAI 238
            ++GD + +V  +           ++        + PA ++P++I  ++   A    + +
Sbjct: 250 QLLGDKAGNVVHLYE-----RDCSVQRRHQKVVEIAPAPRLPIEIRDKMTEAAVRLARHV 304

Query: 239 GCRGISRSDFLFDPLSRKVFWLEIN 263
           G       +FL D      +++E+N
Sbjct: 305 GYENAGTVEFLCDESGN-FYFIEVN 328


>gi|89894788|ref|YP_518275.1| hypothetical protein DSY2042 [Desulfitobacterium hafniense Y51]
 gi|89334236|dbj|BAE83831.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 1079

 Score = 71.3 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 55/287 (19%), Positives = 107/287 (37%), Gaps = 35/287 (12%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQIDVD---------------------RSVGLV 45
           G ++E + +   G     AL + G +V  ++ +                     +++  +
Sbjct: 21  GQAAEFDYA---GTQACKALREVGIEVILVNSNPATIMTDEQMADRIYLEPLLPQNLEGI 77

Query: 46  LAHLKPDLAFNVLHGNFGED--GLVQ--AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           LA  +PD     L G  G +    +Q   ILE   +            + D+   K+ + 
Sbjct: 78  LAQERPDALLPTLGGQTGLNLAMKLQEEGILERYGVALIGCNAETIYKAEDREAFKETML 137

Query: 102 SCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G P+  S +V      +        P +++P       G    K ++ +   L +   
Sbjct: 138 EIGEPLAESAIVTSLEEGLAFTARRGYPVIVRPAYTLGGTGGGFAKNEKELLEVLHRGLQ 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   Q L+E+ V G  E+   VM DA  +   I V   +     +   + +S  V P++
Sbjct: 198 ASPIHQCLLERSVAGWKEIEYEVMRDAMDN--CITVCNMENID-PVGIHTGDSIVVAPSQ 254

Query: 219 -IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +    Y+ ++  +    +A+G  G     F  DP SR+   +E+N 
Sbjct: 255 TLTDGEYQMLRSSSLKIIRALGVNGGCNVQFALDPESREYVVIEVNP 301



 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 83/220 (37%), Gaps = 13/220 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--QHLISPPYV 129
           L+   +    S + A   + D+ R  Q++   G+P          +        +  P +
Sbjct: 646 LQKAGVRILGSQVDAIDKAEDRERFAQLLLELGIPQSEGCAATSVSQARTIAEELGFPVL 705

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           ++P        + V++    +   L Q+ + +    +L+++Y++G E+    + D  + V
Sbjct: 706 VRPSYVIGGRAMQVVENFAELESYLTQAITLSPEHPILVDRYLEGKEVEVDAVADGEITV 765

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               +   +           +S  V P + +     +++Q       + +  RG+    F
Sbjct: 766 IPGIMEHIERAGVHS----GDSLAVYPTQSLTPAEIQQIQDYTCRIAKGMEVRGLLNIQF 821

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           +   ++ KV+ +E+N +   T     P ++   G     L
Sbjct: 822 VV--VNGKVYVIEVNPRASRT----VPILSKVTGIPLVAL 855


>gi|333011414|gb|EGK30828.1| carbamoyl-phosphate synthase large chain [Shigella flexneri K-272]
 gi|333021653|gb|EGK40902.1| carbamoyl-phosphate synthase large chain [Shigella flexneri K-227]
          Length = 1073

 Score = 71.3 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 97/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D +              V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +    Q +LE   +    +   A   + D+ R    +   G+    S +
Sbjct: 89  TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGI 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     +     +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHTMEEALAVAADVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + +   +   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIEN----FDAMGIHTGDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RNASMAVLREIGVETGGSNVQFAVNPKNGRLIVIEMNP 302



 Score = 60.1 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 30/197 (15%), Positives = 74/197 (37%), Gaps = 10/197 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYV 129
           LE   +P   +   A   + D+ R +  V    +    +  V    M  +    I  P V
Sbjct: 654 LEAAGVPVIGTSPDAIDRAEDRERFQHAVDRLKLKQPANATVTAIEMAVEKAKEIGYPLV 713

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  +  +      + S ++   +L++ ++ D +E+    + D  + 
Sbjct: 714 VRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDVPVLLDHFLDDAVEVDVDAICDGEMV 773

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           +    +   +    +    S +S   LPA  +  +I   +++        +  RG+    
Sbjct: 774 LIGGIMEHIE----QAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRGLMNVQ 829

Query: 248 FLFDPLSRKVFWLEINV 264
           F     + +V+ +E+N 
Sbjct: 830 FAV--KNNEVYLIEVNP 844


>gi|331661399|ref|ZP_08362323.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli
           TA143]
 gi|331061314|gb|EGI33277.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli
           TA143]
          Length = 1072

 Score = 71.3 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 97/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D +              V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +    Q +LE   +    +   A   + D+ R    +   G+    S +
Sbjct: 89  TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGI 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     +     +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHTMEEALAVAADVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + +   +   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIEN----FDAMGIHTGDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RNASMAVLREIGVETGGSNVQFAVNPKNGRLIVIEMNP 302



 Score = 60.5 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 29/197 (14%), Positives = 74/197 (37%), Gaps = 10/197 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           LE   +P   +   A   + D+ R +  V    +    +  V      ++    I  P V
Sbjct: 653 LEAAGVPVIGTSPDAIDRAEDRERFQHAVERLKLKQPANATVTTIEMAVEKAKEIGYPLV 712

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  +  +      + S ++   +L++ ++ D +E+    + D  + 
Sbjct: 713 VRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDDAVEVDVDAICDGEMV 772

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           +    +   +    +    S +S   LPA  +  +I   +++        +  RG+    
Sbjct: 773 LIGGIMEHIE----QAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRGLMNVQ 828

Query: 248 FLFDPLSRKVFWLEINV 264
           F     + +V+ +E+N 
Sbjct: 829 FAV--KNNEVYLIEVNP 843


>gi|284919814|emb|CBG32869.1| carbamoyl-phosphate synthase large chain [Escherichia coli 042]
          Length = 1073

 Score = 71.3 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 97/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D +              V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +    Q +LE   +    +   A   + D+ R    +   G+    S +
Sbjct: 89  TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGI 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     +     +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHTMEEALAVAADVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + +   +   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIEN----FDAMGIHTGDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RNASMAVLREIGVETGGSNVQFAVNPKNGRLIVIEMNP 302



 Score = 60.1 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 30/197 (15%), Positives = 74/197 (37%), Gaps = 10/197 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYV 129
           LE   +P   +   A   + D+ R +  V    +    +  V    M  +    I  P V
Sbjct: 654 LEAAGVPVIGTSPDAIDRAEDRERFQHAVDRLKLKQPANATVTAIEMAVEKAKEIGYPLV 713

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  +  +      + S ++   +L++ ++ D +E+    + D  + 
Sbjct: 714 VRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDDAVEVDVDAICDGEMV 773

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           +    +   +    +    S +S   LPA  +  +I   +++        +  RG+    
Sbjct: 774 LIGGIMEHIE----QAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRGLMNVQ 829

Query: 248 FLFDPLSRKVFWLEINV 264
           F     + +V+ +E+N 
Sbjct: 830 FAV--KNNEVYLIEVNP 844


>gi|260866183|ref|YP_003232585.1| carbamoyl-phosphate synthase large subunit [Escherichia coli
           O111:H- str. 11128]
 gi|257762539|dbj|BAI34034.1| carbamoyl-phosphate synthase large subunit [Escherichia coli
           O111:H- str. 11128]
 gi|323176339|gb|EFZ61931.1| carbamoyl-phosphate synthase large chain [Escherichia coli 1180]
          Length = 1073

 Score = 71.3 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 97/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D +              V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +    Q +LE   +    +   A   + D+ R    +   G+    S +
Sbjct: 89  TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGI 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     +     +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHTMEEALAVAADVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + +   +   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIEN----FDAMGIHTGDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RNASMAVLREIGVETGGSNVQFAVNPKNGRLIVIEMNP 302



 Score = 60.5 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 30/197 (15%), Positives = 74/197 (37%), Gaps = 10/197 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYV 129
           LE   +P   +   A   + D+ R +  V    +    +  V    M  +    I  P V
Sbjct: 654 LEAAGVPVIGTSPDAIDRAEDRERFQHAVERLKLKQPANATVTAIEMAVEKAKEIGYPLV 713

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  +  +      + S ++   +L++ ++ D +E+    + D  + 
Sbjct: 714 VRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDDAVEVDVDAICDGEMV 773

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           +    +   +    +    S +S   LPA  +  +I   +++        +  RG+    
Sbjct: 774 LIGGIMEHIE----QAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRGLMNVQ 829

Query: 248 FLFDPLSRKVFWLEINV 264
           F     + +V+ +E+N 
Sbjct: 830 FAV--KNNEVYLIEVNP 844


>gi|126727136|ref|ZP_01742973.1| Carbamoyl-phosphate synthase L chain, ATP-binding protein
           [Rhodobacterales bacterium HTCC2150]
 gi|126703564|gb|EBA02660.1| Carbamoyl-phosphate synthase L chain, ATP-binding protein
           [Rhodobacterales bacterium HTCC2150]
          Length = 645

 Score = 71.3 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 44/225 (19%), Positives = 82/225 (36%), Gaps = 23/225 (10%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      +E   + +      A      K  +K ++ + GVPV P    
Sbjct: 77  AIHPGYGFLSENPEFVEAVEAAGLVFIGPSSQAIRAMGLKDAAKALMQAAGVPVVPGYHG 136

Query: 114 NRFT----MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
                    D    I  P +IK + GG   G+ ++K        L     ++++      
Sbjct: 137 ADQDAAVLADEAGKIGYPVLIKAVAGGGGKGMRLVKDAADFTTALASAQREATAAFGNGD 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           +L+E++VD    +   V GD S  V              L+          PA  +  ++
Sbjct: 197 VLVEKFVDHPRHIEVQVFGDGSKAV------HLFERDCSLQRRHQKVIEEAPAPSMTQEM 250

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR----KVFWLEINV 264
            + +   A  A  A+G  G    +F+ D  +     K +++E+N 
Sbjct: 251 RQAMGEAAVRAAAAVGYAGAGTVEFIVDASNGLKVDKFYFMEMNT 295


>gi|221133545|ref|ZP_03559850.1| acetyl-CoA carboxylase [Glaciecola sp. HTCC2999]
          Length = 447

 Score = 71.3 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 35/222 (15%), Positives = 79/222 (35%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E       +E     +         L  DK+ +   + + GVP  P    
Sbjct: 77  AIHPGYGFLAESAEFAEAVEKSGFIFIGPKAETINLMGDKVSAISSMKAAGVPCVPGSDG 136

Query: 112 -LVNRFTMDS--QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGD 164
            L +    +      I  P ++K   GG   G+ V++ +  +   +     ++ +  + D
Sbjct: 137 PLTDDAERNKSIAKRIGYPIIVKAAGGGGGRGMRVVRSEAELNEAIAMTKSEAGAAFNND 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E++++    +   V+ D       +            K          PA  +   
Sbjct: 197 VVYMEKFLENPRHVEIQVLADGQGGAIHLGERDCSMQRRHQK-----VVEEAPAPGVSDQ 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +++      A   IG RG    +FL+   + + +++E+N 
Sbjct: 252 MREKIGERCRKACIEIGYRGAGTFEFLY--ENGEFYFIEMNT 291


>gi|87200245|ref|YP_497502.1| carbamoyl phosphate synthase large subunit [Novosphingobium
           aromaticivorans DSM 12444]
 gi|87135926|gb|ABD26668.1| carbamoyl-phosphate synthase large subunit [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 1107

 Score = 71.3 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 41/225 (18%), Positives = 85/225 (37%), Gaps = 14/225 (6%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ--HLISPPYV 129
           L+   IP   +   +  L+ D+ R   +V+  G+    + +             I  P +
Sbjct: 690 LQDAGIPILGTSPDSIDLAEDRERFAALVARLGLKQPANGIARSRDEAVAVASRIGYPVL 749

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           I+P        + ++     +   +  +   +    +LI+QY+ D IE     + D    
Sbjct: 750 IRPSYVLGGRAMEIVDSQAQLDDYIATAVQVSGDSPVLIDQYLRDAIECDVDALADGD-- 807

Query: 189 VTEIAVPKSDFYSYELK-YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
             E+ V     +  E   +S  ++  + P  +P +I  E++R A L  + +  RG+    
Sbjct: 808 --EVTVAGVMQHIEEAGIHSGDSACTLPPYSLPAEIVAEMERQAVLLARGLDVRGLMNIQ 865

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           F       +V+ +E+N +   T     P +A   G    +    +
Sbjct: 866 FAV--KDGEVYLIEVNPRASRT----VPFVAKAVGQPIAKFAARI 904



 Score = 56.7 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 44/278 (15%), Positives = 94/278 (33%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G+++  +         D D              V  ++   +PD    
Sbjct: 29  SGTQAVKALKEEGYRIILVNSNPATIMTDPDMAHATYVEPITPEVVARIIEKERPDALLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +       LE   +    +   A   + D+ R ++ +   G+    S +
Sbjct: 89  TMGGQTALNTALALFNDGTLEKYGVQMIGANADAIDKAEDRQRFREAMDKIGLESARSGV 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     ++       P +I+P       G  +    +     +      +   ++LIE+
Sbjct: 149 AHTIDEALEVLERTGLPSIIRPSFTMGGTGGGIAYNKEEFVKIVKGGLEASPTTEVLIEE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPA-KIPLDIYKEV 227
            + G  E    V+ D   +   I   ++ D           +S  V PA  +    Y+ +
Sbjct: 209 SLLGWKEYEMEVVRDRKDNAIIICSIENVDPMGVHT----GDSITVAPALTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P   ++  +E+N 
Sbjct: 265 RNASIAVLREIGVETGGSNVQFAVNPADGRLIVIEMNP 302


>gi|15799715|ref|NP_285727.1| carbamoyl phosphate synthase large subunit [Escherichia coli
           O157:H7 EDL933]
 gi|15829290|ref|NP_308063.1| carbamoyl phosphate synthase large subunit [Escherichia coli
           O157:H7 str. Sakai]
 gi|24111479|ref|NP_705989.1| carbamoyl phosphate synthase large subunit [Shigella flexneri 2a
           str. 301]
 gi|30061601|ref|NP_835772.1| carbamoyl phosphate synthase large subunit [Shigella flexneri 2a
           str. 2457T]
 gi|110804100|ref|YP_687620.1| carbamoyl phosphate synthase large subunit [Shigella flexneri 5
           str. 8401]
 gi|168751711|ref|ZP_02776733.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli
           O157:H7 str. EC4113]
 gi|168756859|ref|ZP_02781866.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli
           O157:H7 str. EC4401]
 gi|168762795|ref|ZP_02787802.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli
           O157:H7 str. EC4501]
 gi|168766723|ref|ZP_02791730.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli
           O157:H7 str. EC4486]
 gi|168776951|ref|ZP_02801958.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli
           O157:H7 str. EC4196]
 gi|168781732|ref|ZP_02806739.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli
           O157:H7 str. EC4076]
 gi|168785086|ref|ZP_02810093.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli
           O157:H7 str. EC869]
 gi|168801916|ref|ZP_02826923.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli
           O157:H7 str. EC508]
 gi|195937706|ref|ZP_03083088.1| carbamoyl phosphate synthase large subunit [Escherichia coli
           O157:H7 str. EC4024]
 gi|208806580|ref|ZP_03248917.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli
           O157:H7 str. EC4206]
 gi|208812930|ref|ZP_03254259.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli
           O157:H7 str. EC4045]
 gi|208818860|ref|ZP_03259180.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli
           O157:H7 str. EC4042]
 gi|209396701|ref|YP_002268640.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli
           O157:H7 str. EC4115]
 gi|217324642|ref|ZP_03440726.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli
           O157:H7 str. TW14588]
 gi|254791169|ref|YP_003076006.1| carbamoyl phosphate synthase large subunit [Escherichia coli
           O157:H7 str. TW14359]
 gi|256025350|ref|ZP_05439215.1| carbamoyl phosphate synthase large subunit [Escherichia sp.
           4_1_40B]
 gi|261226791|ref|ZP_05941072.1| carbamoyl-phosphate synthase large subunit [Escherichia coli
           O157:H7 str. FRIK2000]
 gi|261255194|ref|ZP_05947727.1| carbamoyl-phosphate synthase large subunit [Escherichia coli
           O157:H7 str. FRIK966]
 gi|291280856|ref|YP_003497674.1| Carbamoyl-phosphate synthase large chain [Escherichia coli O55:H7
           str. CB9615]
 gi|293417908|ref|ZP_06660530.1| carbamoyl-phosphate synthase [Escherichia coli B185]
 gi|54036830|sp|P63738|CARB_SHIFL RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|54040878|sp|P63737|CARB_ECO57 RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|12512719|gb|AAG54335.1|AE005180_2 carbamoyl-phosphate synthase large subunit [Escherichia coli
           O157:H7 str. EDL933]
 gi|13359492|dbj|BAB33459.1| carbamoyl-phosphate synthase large subunit [Escherichia coli
           O157:H7 str. Sakai]
 gi|24050230|gb|AAN41696.1| carbamoyl-phosphate synthase large subunit [Shigella flexneri 2a
           str. 301]
 gi|30039843|gb|AAP15577.1| carbamoyl-phosphate synthase large subunit [Shigella flexneri 2a
           str. 2457T]
 gi|110613648|gb|ABF02315.1| carbamoyl-phosphate synthase large subunit [Shigella flexneri 5
           str. 8401]
 gi|187767704|gb|EDU31548.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli
           O157:H7 str. EC4196]
 gi|188014318|gb|EDU52440.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli
           O157:H7 str. EC4113]
 gi|189000773|gb|EDU69759.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli
           O157:H7 str. EC4076]
 gi|189356056|gb|EDU74475.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli
           O157:H7 str. EC4401]
 gi|189364139|gb|EDU82558.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli
           O157:H7 str. EC4486]
 gi|189366979|gb|EDU85395.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli
           O157:H7 str. EC4501]
 gi|189375070|gb|EDU93486.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli
           O157:H7 str. EC869]
 gi|189376018|gb|EDU94434.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli
           O157:H7 str. EC508]
 gi|208726381|gb|EDZ75982.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli
           O157:H7 str. EC4206]
 gi|208734207|gb|EDZ82894.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli
           O157:H7 str. EC4045]
 gi|208738983|gb|EDZ86665.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli
           O157:H7 str. EC4042]
 gi|209158101|gb|ACI35534.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli
           O157:H7 str. EC4115]
 gi|209748710|gb|ACI72662.1| carbamoyl-phosphate synthase large subunit [Escherichia coli]
 gi|209748712|gb|ACI72663.1| carbamoyl-phosphate synthase large subunit [Escherichia coli]
 gi|209748714|gb|ACI72664.1| carbamoyl-phosphate synthase large subunit [Escherichia coli]
 gi|217320863|gb|EEC29287.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli
           O157:H7 str. TW14588]
 gi|254590569|gb|ACT69930.1| carbamoyl-phosphate synthase large subunit [Escherichia coli
           O157:H7 str. TW14359]
 gi|281599394|gb|ADA72378.1| Carbamoyl-phosphate synthase large chain [Shigella flexneri
           2002017]
 gi|290760729|gb|ADD54690.1| Carbamoyl-phosphate synthase large chain [Escherichia coli O55:H7
           str. CB9615]
 gi|291430626|gb|EFF03624.1| carbamoyl-phosphate synthase [Escherichia coli B185]
 gi|313646591|gb|EFS11052.1| carbamoyl-phosphate synthase large chain [Shigella flexneri 2a str.
           2457T]
 gi|320190447|gb|EFW65097.1| Carbamoyl-phosphate synthase large chain [Escherichia coli O157:H7
           str. EC1212]
 gi|320642073|gb|EFX11424.1| carbamoyl phosphate synthase large subunit [Escherichia coli
           O157:H7 str. G5101]
 gi|320658159|gb|EFX25888.1| carbamoyl phosphate synthase large subunit [Escherichia coli O55:H7
           str. 3256-97 TW 07815]
 gi|320663468|gb|EFX30752.1| carbamoyl phosphate synthase large subunit [Escherichia coli O55:H7
           str. USDA 5905]
 gi|320668780|gb|EFX35575.1| carbamoyl phosphate synthase large subunit [Escherichia coli
           O157:H7 str. LSU-61]
 gi|326345250|gb|EGD68993.1| Carbamoyl-phosphate synthase large chain [Escherichia coli O157:H7
           str. 1125]
 gi|326346897|gb|EGD70631.1| Carbamoyl-phosphate synthase large chain [Escherichia coli O157:H7
           str. 1044]
 gi|332762315|gb|EGJ92582.1| carbamoyl-phosphate synthase large chain [Shigella flexneri
           2747-71]
 gi|332764874|gb|EGJ95102.1| carbamoyl-phosphate synthase large chain [Shigella flexneri K-671]
 gi|332768820|gb|EGJ98999.1| carB [Shigella flexneri 2930-71]
 gi|333009202|gb|EGK28658.1| carbamoyl-phosphate synthase large chain [Shigella flexneri K-218]
 gi|333010524|gb|EGK29957.1| carbamoyl-phosphate synthase large chain [Shigella flexneri VA-6]
 gi|333022398|gb|EGK41636.1| carbamoyl-phosphate synthase large chain [Shigella flexneri K-304]
          Length = 1073

 Score = 71.3 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 97/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D +              V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +    Q +LE   +    +   A   + D+ R    +   G+    S +
Sbjct: 89  TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGI 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     +     +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHTMEEALAVAADVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + +   +   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIEN----FDAMGIHTGDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RNASMAVLREIGVETGGSNVQFAVNPKNGRLIVIEMNP 302



 Score = 60.1 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 30/197 (15%), Positives = 74/197 (37%), Gaps = 10/197 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYV 129
           LE   +P   +   A   + D+ R +  V    +    +  V    M  +    I  P V
Sbjct: 654 LEAAGVPVIGTSPDAIDRAEDRERFQHAVDRLKLKQPANATVTAIEMAVEKAKEIGYPLV 713

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  +  +      + S ++   +L++ ++ D +E+    + D  + 
Sbjct: 714 VRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDDAVEVDVDAICDGEMV 773

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           +    +   +    +    S +S   LPA  +  +I   +++        +  RG+    
Sbjct: 774 LIGGIMEHIE----QAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRGLMNVQ 829

Query: 248 FLFDPLSRKVFWLEINV 264
           F     + +V+ +E+N 
Sbjct: 830 FAV--KNNEVYLIEVNP 844


>gi|188493701|ref|ZP_03000971.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli
           53638]
 gi|188488900|gb|EDU64003.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli
           53638]
          Length = 1073

 Score = 71.3 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 97/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D +              V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +    Q +LE   +    +   A   + D+ R    +   G+    S +
Sbjct: 89  TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGI 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     +     +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHTMEEALAVAADVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + +   +   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIEN----FDAMGIHTGDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RNASMAVLREIGVETGGSNVQFAVNPKNGRLIVIEMNP 302



 Score = 60.5 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 30/197 (15%), Positives = 74/197 (37%), Gaps = 10/197 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYV 129
           LE   +P   +   A   + D+ R +  V    +    +  V    M  +    I  P V
Sbjct: 654 LEAAGVPVIGTSPDAIDRAEDRERFQHAVERLKLKQPANATVTAIEMAVEKAKEIGYPLV 713

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  +  +      + S ++   +L++ ++ D +E+    + D  + 
Sbjct: 714 VRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDDAVEVDVDAICDGEMV 773

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           +    +   +    +    S +S   LPA  +  +I   +++        +  RG+    
Sbjct: 774 LIGGIMEHIE----QAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRGLMNVQ 829

Query: 248 FLFDPLSRKVFWLEINV 264
           F     + +V+ +E+N 
Sbjct: 830 FAV--KNNEVYLIEVNP 844


>gi|74310651|ref|YP_309070.1| carbamoyl phosphate synthase large subunit [Shigella sonnei Ss046]
 gi|82542649|ref|YP_406596.1| carbamoyl phosphate synthase large subunit [Shigella boydii Sb227]
 gi|157159012|ref|YP_001461202.1| carbamoyl phosphate synthase large subunit [Escherichia coli
           E24377A]
 gi|157159501|ref|YP_001456819.1| carbamoyl phosphate synthase large subunit [Escherichia coli HS]
 gi|191168899|ref|ZP_03030670.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli B7A]
 gi|193066203|ref|ZP_03047256.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli E22]
 gi|193070991|ref|ZP_03051920.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli
           E110019]
 gi|194429873|ref|ZP_03062385.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli B171]
 gi|194439699|ref|ZP_03071769.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli
           101-1]
 gi|209917224|ref|YP_002291308.1| carbamoyl phosphate synthase large subunit [Escherichia coli SE11]
 gi|218552617|ref|YP_002385530.1| carbamoyl phosphate synthase large subunit [Escherichia coli IAI1]
 gi|218693504|ref|YP_002401171.1| carbamoyl phosphate synthase large subunit [Escherichia coli 55989]
 gi|253774934|ref|YP_003037765.1| carbamoyl phosphate synthase large subunit [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254160159|ref|YP_003043267.1| carbamoyl phosphate synthase large subunit [Escherichia coli B str.
           REL606]
 gi|256020127|ref|ZP_05433992.1| carbamoyl phosphate synthase large subunit [Shigella sp. D9]
 gi|260842270|ref|YP_003220048.1| carbamoyl-phosphate synthase large subunit [Escherichia coli
           O103:H2 str. 12009]
 gi|260853243|ref|YP_003227134.1| carbamoyl-phosphate synthase large subunit [Escherichia coli
           O26:H11 str. 11368]
 gi|293476696|ref|ZP_06665104.1| carbamoyl-phosphate synthase [Escherichia coli B088]
 gi|300816067|ref|ZP_07096290.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli MS
           107-1]
 gi|300821963|ref|ZP_07102107.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli MS
           119-7]
 gi|300905435|ref|ZP_07123202.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli MS
           84-1]
 gi|300919583|ref|ZP_07136075.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli MS
           115-1]
 gi|300924019|ref|ZP_07140019.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli MS
           182-1]
 gi|300928670|ref|ZP_07144189.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli MS
           187-1]
 gi|301305077|ref|ZP_07211178.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli MS
           124-1]
 gi|307311514|ref|ZP_07591156.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli W]
 gi|309797799|ref|ZP_07692183.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli MS
           145-7]
 gi|331666266|ref|ZP_08367147.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli
           TA271]
 gi|331680603|ref|ZP_08381262.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli H591]
 gi|332281281|ref|ZP_08393694.1| carbamoyl-phosphate synthase large subunit [Shigella sp. D9]
 gi|73854128|gb|AAZ86835.1| carbamoyl-phosphate synthase large subunit [Shigella sonnei Ss046]
 gi|81244060|gb|ABB64768.1| carbamoyl-phosphate synthase large subunit [Shigella boydii Sb227]
 gi|157065181|gb|ABV04436.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli HS]
 gi|157081042|gb|ABV20750.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli
           E24377A]
 gi|190901065|gb|EDV60843.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli B7A]
 gi|192926128|gb|EDV80769.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli E22]
 gi|192955721|gb|EDV86195.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli
           E110019]
 gi|194412092|gb|EDX28402.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli B171]
 gi|194421384|gb|EDX37401.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli
           101-1]
 gi|209910483|dbj|BAG75557.1| carbamoyl-phosphate synthase large subunit [Escherichia coli SE11]
 gi|218350236|emb|CAU95919.1| carbamoyl-phosphate synthase large subunit [Escherichia coli 55989]
 gi|218359385|emb|CAQ96924.1| carbamoyl-phosphate synthase large subunit [Escherichia coli IAI1]
 gi|242375873|emb|CAQ30553.1| carB, subunit of carbamoyl phosphate synthetase [Escherichia coli
           BL21(DE3)]
 gi|253325978|gb|ACT30580.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253972060|gb|ACT37731.1| carbamoyl-phosphate synthase large subunit [Escherichia coli B str.
           REL606]
 gi|253976269|gb|ACT41939.1| carbamoyl-phosphate synthase large subunit [Escherichia coli
           BL21(DE3)]
 gi|257751892|dbj|BAI23394.1| carbamoyl-phosphate synthase large subunit [Escherichia coli
           O26:H11 str. 11368]
 gi|257757417|dbj|BAI28914.1| carbamoyl-phosphate synthase large subunit [Escherichia coli
           O103:H2 str. 12009]
 gi|291321149|gb|EFE60591.1| carbamoyl-phosphate synthase [Escherichia coli B088]
 gi|300402713|gb|EFJ86251.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli MS
           84-1]
 gi|300413329|gb|EFJ96639.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli MS
           115-1]
 gi|300419743|gb|EFK03054.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli MS
           182-1]
 gi|300463339|gb|EFK26832.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli MS
           187-1]
 gi|300525563|gb|EFK46632.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli MS
           119-7]
 gi|300531274|gb|EFK52336.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli MS
           107-1]
 gi|300839684|gb|EFK67444.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli MS
           124-1]
 gi|306908493|gb|EFN38991.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli W]
 gi|308118628|gb|EFO55890.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli MS
           145-7]
 gi|315059258|gb|ADT73585.1| carbamoyl-phosphate synthase large subunit [Escherichia coli W]
 gi|315255693|gb|EFU35661.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli MS
           85-1]
 gi|320186145|gb|EFW60887.1| Carbamoyl-phosphate synthase large chain [Shigella flexneri CDC
           796-83]
 gi|320200450|gb|EFW75036.1| Carbamoyl-phosphate synthase large chain [Escherichia coli EC4100B]
 gi|323157908|gb|EFZ44011.1| carbamoyl-phosphate synthase large chain [Escherichia coli EPECa14]
 gi|323160049|gb|EFZ46012.1| carbamoyl-phosphate synthase large chain [Escherichia coli E128010]
 gi|323166081|gb|EFZ51860.1| carbamoyl-phosphate synthase large chain [Shigella sonnei 53G]
 gi|323171452|gb|EFZ57099.1| carbamoyl-phosphate synthase large chain [Escherichia coli LT-68]
 gi|323181729|gb|EFZ67142.1| carbamoyl-phosphate synthase large chain [Escherichia coli 1357]
 gi|323380185|gb|ADX52453.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli KO11]
 gi|323945770|gb|EGB41817.1| carbamoyl-phosphate synthase [Escherichia coli H120]
 gi|323959981|gb|EGB55627.1| carbamoyl-phosphate synthase [Escherichia coli H489]
 gi|323970706|gb|EGB65960.1| carbamoyl-phosphate synthase [Escherichia coli TA007]
 gi|324017700|gb|EGB86919.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli MS
           117-3]
 gi|331066477|gb|EGI38354.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli
           TA271]
 gi|331072066|gb|EGI43402.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli H591]
 gi|332090537|gb|EGI95635.1| carbamoyl-phosphate synthase large chain [Shigella boydii 3594-74]
 gi|332103633|gb|EGJ06979.1| carbamoyl-phosphate synthase large subunit [Shigella sp. D9]
          Length = 1073

 Score = 71.3 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 97/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D +              V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +    Q +LE   +    +   A   + D+ R    +   G+    S +
Sbjct: 89  TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGI 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     +     +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHTMEEALAVAADVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + +   +   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIEN----FDAMGIHTGDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RNASMAVLREIGVETGGSNVQFAVNPKNGRLIVIEMNP 302



 Score = 60.5 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 30/197 (15%), Positives = 74/197 (37%), Gaps = 10/197 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYV 129
           LE   +P   +   A   + D+ R +  V    +    +  V    M  +    I  P V
Sbjct: 654 LEAAGVPVIGTSPDAIDRAEDRERFQHAVERLKLKQPANATVTAIEMAVEKAKEIGYPLV 713

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  +  +      + S ++   +L++ ++ D +E+    + D  + 
Sbjct: 714 VRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDDAVEVDVDAICDGEMV 773

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           +    +   +    +    S +S   LPA  +  +I   +++        +  RG+    
Sbjct: 774 LIGGIMEHIE----QAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRGLMNVQ 829

Query: 248 FLFDPLSRKVFWLEINV 264
           F     + +V+ +E+N 
Sbjct: 830 FAV--KNNEVYLIEVNP 844


>gi|320173371|gb|EFW48573.1| Carbamoyl-phosphate synthase large chain [Shigella dysenteriae CDC
           74-1112]
          Length = 1073

 Score = 71.3 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 97/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D +              V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +    Q +LE   +    +   A   + D+ R    +   G+    S +
Sbjct: 89  TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGI 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     +     +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHTMEEALAVAADVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + +   +   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIEN----FDAMGIHTGDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RNASMAVLREIGVETGGSNVQFAVNPKNGRLIVIEMNP 302



 Score = 60.5 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 30/197 (15%), Positives = 74/197 (37%), Gaps = 10/197 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYV 129
           LE   +P   +   A   + D+ R +  V    +    +  V    M  +    I  P V
Sbjct: 654 LEAAGVPVIGTSPDAIDRAEDRERFQHAVERLKLKQPANATVTAIEMAVEKAKEIGYPLV 713

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  +  +      + S ++   +L++ ++ D +E+    + D  + 
Sbjct: 714 VRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDDAVEVDVDAICDGEMV 773

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           +    +   +    +    S +S   LPA  +  +I   +++        +  RG+    
Sbjct: 774 LIGGIMEHIE----QAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRGLMNVQ 829

Query: 248 FLFDPLSRKVFWLEINV 264
           F     + +V+ +E+N 
Sbjct: 830 FAV--KNNEVYLIEVNP 844


>gi|309775911|ref|ZP_07670904.1| acetyl-CoA carboxylase, biotin carboxylase subunit
           [Erysipelotrichaceae bacterium 3_1_53]
 gi|308916333|gb|EFP62080.1| acetyl-CoA carboxylase, biotin carboxylase subunit
           [Erysipelotrichaceae bacterium 3_1_53]
          Length = 455

 Score = 71.3 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 77/220 (35%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  FG   E+     ++    + +            DK  ++Q +   GVPV P    
Sbjct: 77  AIHPGFGFLSENAKFARLVMQCGLIFVGPNPDVIEQMGDKNNARQCMMEAGVPVIPGSKD 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
            +   +  +     I  P +IK   GG   G+      + +      + +        D 
Sbjct: 137 LLETAQDALAMAETIGYPVLIKASNGGGGRGMRRADCAEELENAFDTAKAEARANFGDDA 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+++ +   +   +M D   +V  +            K       H+    +  DI 
Sbjct: 197 VYMEKFIVEPKHVEVQLMADKHGNVVHLFERDCSCQRRNQKLLEEAPCHI----LKEDIR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K +   A  A Q++G   +   +FL D      +++E+N 
Sbjct: 253 KNLLADAVRAAQSVGYDSVGTIEFLLDAR-GDYYFMEMNT 291


>gi|307946338|ref|ZP_07661673.1| propionyl-CoA carboxylase alpha chain [Roseibium sp. TrichSKD4]
 gi|307770002|gb|EFO29228.1| propionyl-CoA carboxylase alpha chain [Roseibium sp. TrichSKD4]
          Length = 670

 Score = 71.3 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 73/221 (33%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H  +G   E       L+   I +      A     DK+ SK+  +   V   P  L 
Sbjct: 77  AVHPGYGFLSERASFPEALKKEGIVFIGPNPRAIEAMGDKIESKKFANDAKVSTVPGYLG 136

Query: 113 ---VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGD 164
                   ++    I  P +IK   GG   G+ +   D+             +SS+   D
Sbjct: 137 VIESPDQAVEIAKDIGYPVMIKASAGGGGKGMRIAWNDEETRDGYTRSKSEAASSFG-DD 195

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           ++ IE++++    +   V+GD   +   +   +        K             +  + 
Sbjct: 196 RVFIEKFIENPRHIEIQVLGDKHGNAIYLGERECSIQRRNQK----VIEEAPSPLLDEET 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +   A    +A+        +F      +  ++LE+N 
Sbjct: 252 RRAMGEQAVALAKAVDYDSAGTVEF-VAGQDKSFYFLEMNT 291


>gi|331681416|ref|ZP_08382053.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli H299]
 gi|331081637|gb|EGI52798.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli H299]
          Length = 1073

 Score = 71.3 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 97/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D +              V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +    Q +LE   +    +   A   + D+ R    +   G+    S +
Sbjct: 89  TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGI 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     +     +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHTMEEALAVAADVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + +   +   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIEN----FDAMGIHTGDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RNASMAVLREIGVETGGSNVQFAVNPKNGRLIVIEMNP 302



 Score = 60.5 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 29/197 (14%), Positives = 74/197 (37%), Gaps = 10/197 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           LE   +P   +   A   + D+ R +  V    +    +  V      ++    I  P V
Sbjct: 654 LEAAGVPVIGTSPDAIDRAEDRERFQHAVERLKLKQPANATVTTIEMAVEKAKEIGYPLV 713

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  +  +      + S ++   +L++ ++ D +E+    + D  + 
Sbjct: 714 VRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDDAVEVDVDAICDGEMV 773

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           +    +   +    +    S +S   LPA  +  +I   +++        +  RG+    
Sbjct: 774 LIGGIMEHIE----QAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRGLMNVQ 829

Query: 248 FLFDPLSRKVFWLEINV 264
           F     + +V+ +E+N 
Sbjct: 830 FAV--KNNEVYLIEVNP 844


>gi|331671552|ref|ZP_08372350.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli
           TA280]
 gi|331071397|gb|EGI42754.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli
           TA280]
          Length = 1072

 Score = 71.3 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 97/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D +              V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +    Q +LE   +    +   A   + D+ R    +   G+    S +
Sbjct: 89  TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGI 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     +     +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHTMEEALAVAADVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + +   +   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIEN----FDAMGIHTGDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RNASMAVLREIGVETGGSNVQFAVNPKNGRLIVIEMNP 302



 Score = 60.1 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 30/197 (15%), Positives = 74/197 (37%), Gaps = 10/197 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYV 129
           LE   +P   +   A   + D+ R +  V    +    +  V    M  +    I  P V
Sbjct: 653 LEAAGVPVIGTSPDAIDRAEDRERFQHAVDRLKLKQPANATVTAIEMAVEKAKEIGYPLV 712

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  +  +      + S ++   +L++ ++ D +E+    + D  + 
Sbjct: 713 VRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDDAVEVDVDAICDGEMV 772

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           +    +   +    +    S +S   LPA  +  +I   +++        +  RG+    
Sbjct: 773 LIGGIMEHIE----QAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRGLMNVQ 828

Query: 248 FLFDPLSRKVFWLEINV 264
           F     + +V+ +E+N 
Sbjct: 829 FAV--KNNEVYLIEVNP 843


>gi|298246458|ref|ZP_06970264.1| acetyl-CoA carboxylase, biotin carboxylase [Ktedonobacter racemifer
           DSM 44963]
 gi|297553939|gb|EFH87804.1| acetyl-CoA carboxylase, biotin carboxylase [Ktedonobacter racemifer
           DSM 44963]
          Length = 450

 Score = 71.3 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 43/220 (19%), Positives = 87/220 (39%), Gaps = 18/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+     I + + I +        ++  DK+ +++ +   G+P  P   V
Sbjct: 77  AIHPGYGFLSENTSFAEICKDVNITFIGPSASVMSVMGDKVSAREAMIKAGLPTLPGTPV 136

Query: 114 NR---FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP-----LDLLQSSSWNHGDQ 165
            R      D+   IS P ++K + GG   GI +I K +               ++   D 
Sbjct: 137 LRTLSEAQDAAREISFPLMLKAVAGGGGRGIRLINKPEEFDRVFTVAQNEVREAF-RDDG 195

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+YV     +   V+ D       +            K    + + +    +P ++ 
Sbjct: 196 IYLERYVAKARHVEIQVLVDNYGHGVHLGERNCSCQRRNQKVLEESPSPI----LPRELC 251

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +E+ + A  A Q +G R     +FL D  +R  +++E+N 
Sbjct: 252 EEMGQKAIRAVQEVGYRNAGTLEFLVDEQNR-YYFMEMNT 290


>gi|293408125|ref|ZP_06651965.1| carbamoyl-phosphate synthase [Escherichia coli B354]
 gi|291472376|gb|EFF14858.1| carbamoyl-phosphate synthase [Escherichia coli B354]
          Length = 1072

 Score = 71.3 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 97/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D +              V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +    Q +LE   +    +   A   + D+ R    +   G+    S +
Sbjct: 89  TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGI 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     +     +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHTMEEALAVAADVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + +   +   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIEN----FDAMGIHTGDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RNASMAVLREIGVETGGSNVQFAVNPKNGRLIVIEMNP 302



 Score = 60.1 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 30/197 (15%), Positives = 74/197 (37%), Gaps = 10/197 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYV 129
           LE   +P   +   A   + D+ R +  V    +    +  V    M  +    I  P V
Sbjct: 653 LEAAGVPVIGTSPDAIDRAEDRERFQHAVDRLKLKQPANATVTAIEMAVEKAKEIGYPLV 712

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  +  +      + S ++   +L++ ++ D +E+    + D  + 
Sbjct: 713 VRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDDAVEVDVDAICDGEMV 772

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           +    +   +    +    S +S   LPA  +  +I   +++        +  RG+    
Sbjct: 773 LIGGIMEHIE----QAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRGLMNVQ 828

Query: 248 FLFDPLSRKVFWLEINV 264
           F     + +V+ +E+N 
Sbjct: 829 FAV--KNNEVYLIEVNP 843


>gi|218698453|ref|YP_002406082.1| carbamoyl phosphate synthase large subunit [Escherichia coli IAI39]
 gi|218368439|emb|CAR16175.1| carbamoyl-phosphate synthase large subunit [Escherichia coli IAI39]
          Length = 1073

 Score = 71.3 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 97/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D +              V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +    Q +LE   +    +   A   + D+ R    +   G+    S +
Sbjct: 89  TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGI 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     +     +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHTMEEALAVAADVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + +   +   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIEN----FDAMGIHTGDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RNASMAVLREIGVETGGSNVQFAVNPKNGRLIVIEMNP 302



 Score = 60.5 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 29/197 (14%), Positives = 74/197 (37%), Gaps = 10/197 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           LE   +P   +   A   + D+ R +  V    +    +  V      ++    I  P V
Sbjct: 654 LEAAGVPVIGTSPDAIDRAEDRERFQHAVERLKLKQPANATVTTIEMAVEKAKEIGYPLV 713

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  +  +      + S ++   +L++ ++ D +E+    + D  + 
Sbjct: 714 VRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDDAVEVDVDAICDGEMV 773

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           +    +   +    +    S +S   LPA  +  +I   +++        +  RG+    
Sbjct: 774 LIGGIMEHIE----QAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRGLMNVQ 829

Query: 248 FLFDPLSRKVFWLEINV 264
           F     + +V+ +E+N 
Sbjct: 830 FAV--KNNEVYLIEVNP 844


>gi|212212332|ref|YP_002303268.1| carbamoyl-phosphate synthase large chain [Coxiella burnetii
           CbuG_Q212]
 gi|212010742|gb|ACJ18123.1| carbamoyl-phosphate synthase large chain [Coxiella burnetii
           CbuG_Q212]
          Length = 1073

 Score = 71.3 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 46/278 (16%), Positives = 96/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D D              +  ++   KPD    
Sbjct: 29  SGTQACRALREEGYRVILVNSNPATIMTDPDLADATYIEPVHWEVIAKIIEKEKPDALLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G  G +  +    + ILE   +    +   A   + D+   ++ +   G+    S L
Sbjct: 89  TMGGQTGLNCALDLVREGILEKYGVELIGASREAIDKAEDRSLFQKAMLKIGLQTPRSGL 148

Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +      +    +  P +I+P       G  +            +    +   ++LI++
Sbjct: 149 AHSMEDAWKILEQVGFPAIIRPSFTLGGSGGGIAYNRDEFLAICTRGLELSPTTEILIDE 208

Query: 171 YVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + + +   ++   D           +S  V PA+ +    Y+ +
Sbjct: 209 SIAGWKEFELEVVRDKNDNCIIVCSIENFDPMGIHT----GDSITVAPAQTLTDKEYQRM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  A    + IG   G S   F  +P   ++  +E+N 
Sbjct: 265 RDAAIAILREIGVETGGSNVQFGINPDDGRMIVIEMNP 302



 Score = 64.8 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 39/232 (16%), Positives = 84/232 (36%), Gaps = 26/232 (11%)

Query: 67  LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQHLI 124
            + + L    +P   +   A     D+ R + ++   G+   P+  V      +    + 
Sbjct: 654 KLASALAKAGVPIVGTTPDAIDRVEDRERFQALIQGVGLRQPPNGTVRSVEEGLRLAKVF 713

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL--------IEQYVDGIE 176
           + P +++P        + VI  ++ +   + +    + G+ LL        IE  VD I 
Sbjct: 714 AYPLIVRPSYVLGGRAMKVIYSEKELTRYMTKDVIVSEGEPLLLDRFLDDAIEVDVDAIC 773

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
               V+    L+  E A   S            +S    P  +  +I ++++    L  +
Sbjct: 774 DGENVLIGGILEHIEQAGVHSG----------DSSCAFPPHSLSPEIQEQLREQVRLIAK 823

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
            +G  G+  + F       +++ LE+N +   T     P +A   G    ++
Sbjct: 824 ELGVVGLINTQFAI--QENEIYVLEVNPRASRT----VPFLAKATGMPLAKI 869


>gi|149211275|ref|XP_001523012.1| hypothetical protein MG10320.4 [Magnaporthe oryzae 70-15]
          Length = 722

 Score = 71.3 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 43/235 (18%), Positives = 81/235 (34%), Gaps = 41/235 (17%)

Query: 35  QIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKM 94
            +D DR   L    L P +A +  +G   E+     +     + +      A A   DK 
Sbjct: 109 YLDGDRISRLAADKLGPGVALHPGYGFLSENAAFARLCADRGVNFVGPPASAMADMGDKA 168

Query: 95  RSKQVVSSCGVPVCPSILVNR----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150
           RSK ++S+ GVP  P          F  +    I  P ++K +KGG   G          
Sbjct: 169 RSKHIMSAAGVPCVPGYHGEEQSAAFLAEKAAEIEYPVLLKSVKGGGWKG---------- 218

Query: 151 PLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLN 210
                  +    G ++  +         C  +G+                   ++     
Sbjct: 219 ------DAHRRVGGRVFAD-----RHGGCVALGER---------------DCSIQRRHQK 252

Query: 211 STHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
                PA  +  ++ +++   A  A  A+G  G    +F+ D  + + +++E+N 
Sbjct: 253 VIEESPAPGLSEELRQDLWAKARTAALAVGYVGAGTVEFILDRDTDRFYFMEMNT 307


>gi|170021609|ref|YP_001726563.1| carbamoyl phosphate synthase large subunit [Escherichia coli ATCC
           8739]
 gi|301648401|ref|ZP_07248137.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli MS
           146-1]
 gi|307136636|ref|ZP_07495992.1| carbamoyl phosphate synthase large subunit [Escherichia coli H736]
 gi|331640482|ref|ZP_08341630.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli H736]
 gi|169756537|gb|ACA79236.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli ATCC
           8739]
 gi|301073536|gb|EFK88342.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli MS
           146-1]
 gi|309700246|emb|CBI99534.1| carbamoyl-phosphate synthase large chain [Escherichia coli ETEC
           H10407]
 gi|315616190|gb|EFU96809.1| carbamoyl-phosphate synthase large chain [Escherichia coli 3431]
 gi|323935085|gb|EGB31452.1| carbamoyl-phosphate synthase [Escherichia coli E1520]
 gi|331040228|gb|EGI12435.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli H736]
 gi|332341364|gb|AEE54698.1| carbamoyl-phosphate synthase, large subunit CarB [Escherichia coli
           UMNK88]
          Length = 1073

 Score = 71.3 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 97/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D +              V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +    Q +LE   +    +   A   + D+ R    +   G+    S +
Sbjct: 89  TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGI 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     +     +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHTMEEALAVAADVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + +   +   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIEN----FDAMGIHTGDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RNASMAVLREIGVETGGSNVQFAVNPKNGRLIVIEMNP 302



 Score = 60.1 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 30/197 (15%), Positives = 74/197 (37%), Gaps = 10/197 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYV 129
           LE   +P   +   A   + D+ R +  V    +    +  V    M  +    I  P V
Sbjct: 654 LEAAGVPVIGTSPDAIDRAEDRERFQHAVDRLKLKQPANATVTAIEMAVEKAKEIGYPLV 713

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  +  +      + S ++   +L++ ++ D +E+    + D  + 
Sbjct: 714 VRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDDAVEVDVDAICDGEMV 773

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           +    +   +    +    S +S   LPA  +  +I   +++        +  RG+    
Sbjct: 774 LIGGIMEHIE----QAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRGLMNVQ 829

Query: 248 FLFDPLSRKVFWLEINV 264
           F     + +V+ +E+N 
Sbjct: 830 FAV--KNNEVYLIEVNP 844


>gi|27902663|gb|AAO24624.1| propionyl-CoA carboxylase alpha subunit [Methylobacterium
           extorquens]
          Length = 667

 Score = 71.3 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 74/220 (33%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H  +G   E       L    I +      A A   DK+ SK+  ++  V   P  L 
Sbjct: 77  AVHPGYGFLSERESFPKALAEAGIVFIGPNPGAIAAMGDKIESKKAAAAAEVSTVPGFLG 136

Query: 113 ---VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
                   +     I  P +IK   GG   G+ + +    +     ++ S        D+
Sbjct: 137 VIESPEHAVTIADEIGYPVMIKASAGGGGKGMRIAESADEVAEGFARAKSEASSSFGDDR 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+++ D   +   V+GD   +V  +   +        K             +  +  
Sbjct: 197 VFVEKFITDPRHIEIQVIGDKHGNVIYLGERECSIQRRNQK----VIEEAPSPLLDEETR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +++   A    +A+        +F      +  ++LE+N 
Sbjct: 253 RKMGEQAVALAKAVNYDSAGTVEF-VAGQDKSFYFLEMNT 291


>gi|16128027|ref|NP_414574.1| carbamoyl-phosphate synthase large subunit [Escherichia coli str.
           K-12 substr. MG1655]
 gi|89106917|ref|AP_000697.1| carbamoyl-phosphate synthase large subunit [Escherichia coli str.
           K-12 substr. W3110]
 gi|170079696|ref|YP_001729016.1| carbamoyl-phosphate synthase large subunit [Escherichia coli str.
           K-12 substr. DH10B]
 gi|238899438|ref|YP_002925234.1| carbamoyl-phosphate synthase large subunit [Escherichia coli
           BW2952]
 gi|312970126|ref|ZP_07784308.1| carbamoyl-phosphate synthase large chain [Escherichia coli 1827-70]
 gi|115627|sp|P00968|CARB_ECOLI RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|3318817|pdb|1JDB|B Chain B, Carbamoyl Phosphate Synthetase From Escherichia Coli
 gi|3318821|pdb|1JDB|E Chain E, Carbamoyl Phosphate Synthetase From Escherichia Coli
 gi|3318825|pdb|1JDB|H Chain H, Carbamoyl Phosphate Synthetase From Escherichia Coli
 gi|3318829|pdb|1JDB|K Chain K, Carbamoyl Phosphate Synthetase From Escherichia Coli
 gi|4929935|pdb|1BXR|A Chain A, Structure Of Carbamoyl Phosphate Synthetase Complexed With
           The Atp Analog Amppnp
 gi|4929937|pdb|1BXR|C Chain C, Structure Of Carbamoyl Phosphate Synthetase Complexed With
           The Atp Analog Amppnp
 gi|4929939|pdb|1BXR|E Chain E, Structure Of Carbamoyl Phosphate Synthetase Complexed With
           The Atp Analog Amppnp
 gi|4929941|pdb|1BXR|G Chain G, Structure Of Carbamoyl Phosphate Synthetase Complexed With
           The Atp Analog Amppnp
 gi|6730116|pdb|1C30|A Chain A, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small
           Subunit Mutation C269s
 gi|6730118|pdb|1C30|C Chain C, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small
           Subunit Mutation C269s
 gi|6730120|pdb|1C30|E Chain E, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small
           Subunit Mutation C269s
 gi|6730122|pdb|1C30|G Chain G, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small
           Subunit Mutation C269s
 gi|6730126|pdb|1C3O|A Chain A, Crystal Structure Of The Carbamoyl Phosphate Synthetase:
           Small Subunit Mutant C269s With Bound Glutamine
 gi|6730128|pdb|1C3O|C Chain C, Crystal Structure Of The Carbamoyl Phosphate Synthetase:
           Small Subunit Mutant C269s With Bound Glutamine
 gi|6730130|pdb|1C3O|E Chain E, Crystal Structure Of The Carbamoyl Phosphate Synthetase:
           Small Subunit Mutant C269s With Bound Glutamine
 gi|6730132|pdb|1C3O|G Chain G, Crystal Structure Of The Carbamoyl Phosphate Synthetase:
           Small Subunit Mutant C269s With Bound Glutamine
 gi|6730187|pdb|1CS0|A Chain A, Crystal Structure Of Carbamoyl Phosphate Synthetase
           Complexed At Cys269 In The Small Subunit With The
           Tetrahedral Mimic L-Glutamate Gamma-Semialdehyde
 gi|6730189|pdb|1CS0|C Chain C, Crystal Structure Of Carbamoyl Phosphate Synthetase
           Complexed At Cys269 In The Small Subunit With The
           Tetrahedral Mimic L-Glutamate Gamma-Semialdehyde
 gi|6730191|pdb|1CS0|E Chain E, Crystal Structure Of Carbamoyl Phosphate Synthetase
           Complexed At Cys269 In The Small Subunit With The
           Tetrahedral Mimic L-Glutamate Gamma-Semialdehyde
 gi|6730193|pdb|1CS0|G Chain G, Crystal Structure Of Carbamoyl Phosphate Synthetase
           Complexed At Cys269 In The Small Subunit With The
           Tetrahedral Mimic L-Glutamate Gamma-Semialdehyde
 gi|18158903|pdb|1KEE|A Chain A, Inactivation Of The Amidotransferase Activity Of Carbamoyl
           Phosphate Synthetase By The Antibiotic Acivicin
 gi|18158905|pdb|1KEE|C Chain C, Inactivation Of The Amidotransferase Activity Of Carbamoyl
           Phosphate Synthetase By The Antibiotic Acivicin
 gi|18158907|pdb|1KEE|E Chain E, Inactivation Of The Amidotransferase Activity Of Carbamoyl
           Phosphate Synthetase By The Antibiotic Acivicin
 gi|18158909|pdb|1KEE|G Chain G, Inactivation Of The Amidotransferase Activity Of Carbamoyl
           Phosphate Synthetase By The Antibiotic Acivicin
 gi|55669821|pdb|1T36|A Chain A, Crystal Structure Of E. Coli Carbamoyl Phosphate
           Synthetase Small Subunit Mutant C248d Complexed With
           Uridine 5'- Monophosphate
 gi|55669823|pdb|1T36|C Chain C, Crystal Structure Of E. Coli Carbamoyl Phosphate
           Synthetase Small Subunit Mutant C248d Complexed With
           Uridine 5'- Monophosphate
 gi|55669825|pdb|1T36|E Chain E, Crystal Structure Of E. Coli Carbamoyl Phosphate
           Synthetase Small Subunit Mutant C248d Complexed With
           Uridine 5'- Monophosphate
 gi|55669827|pdb|1T36|G Chain G, Crystal Structure Of E. Coli Carbamoyl Phosphate
           Synthetase Small Subunit Mutant C248d Complexed With
           Uridine 5'- Monophosphate
 gi|41079|emb|CAA24744.1| unnamed protein product [Escherichia coli K-12]
 gi|145464|gb|AAA23539.1| carbamoyl-phosphate synthetase subunit B [Escherichia coli]
 gi|1786216|gb|AAC73144.1| carbamoyl-phosphate synthase large subunit [Escherichia coli str.
           K-12 substr. MG1655]
 gi|21321915|dbj|BAB96602.1| carbamoyl-phosphate synthase large subunit [Escherichia coli str.
           K12 substr. W3110]
 gi|169887531|gb|ACB01238.1| carbamoyl-phosphate synthase large subunit [Escherichia coli str.
           K-12 substr. DH10B]
 gi|238860105|gb|ACR62103.1| carbamoyl-phosphate synthase large subunit [Escherichia coli
           BW2952]
 gi|260450758|gb|ACX41180.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli DH1]
 gi|310337624|gb|EFQ02735.1| carbamoyl-phosphate synthase large chain [Escherichia coli 1827-70]
 gi|315134728|dbj|BAJ41887.1| carbamoyl phosphate synthase large subunit [Escherichia coli DH1]
          Length = 1073

 Score = 71.3 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 97/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D +              V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +    Q +LE   +    +   A   + D+ R    +   G+    S +
Sbjct: 89  TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGI 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     +     +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHTMEEALAVAADVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + +   +   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIEN----FDAMGIHTGDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RNASMAVLREIGVETGGSNVQFAVNPKNGRLIVIEMNP 302



 Score = 60.5 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 30/197 (15%), Positives = 74/197 (37%), Gaps = 10/197 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYV 129
           LE   +P   +   A   + D+ R +  V    +    +  V    M  +    I  P V
Sbjct: 654 LEAAGVPVIGTSPDAIDRAEDRERFQHAVERLKLKQPANATVTAIEMAVEKAKEIGYPLV 713

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  +  +      + S ++   +L++ ++ D +E+    + D  + 
Sbjct: 714 VRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDDAVEVDVDAICDGEMV 773

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           +    +   +    +    S +S   LPA  +  +I   +++        +  RG+    
Sbjct: 774 LIGGIMEHIE----QAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRGLMNVQ 829

Query: 248 FLFDPLSRKVFWLEINV 264
           F     + +V+ +E+N 
Sbjct: 830 FAV--KNNEVYLIEVNP 844


>gi|328950193|ref|YP_004367528.1| lysine biosynthesis enzyme LysX [Marinithermus hydrothermalis DSM
           14884]
 gi|328450517|gb|AEB11418.1| lysine biosynthesis enzyme LysX [Marinithermus hydrothermalis DSM
           14884]
          Length = 281

 Score = 71.3 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 49/238 (20%), Positives = 85/238 (35%), Gaps = 35/238 (14%)

Query: 71  ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF--TMDSQHLISPPY 128
            L+ L IP   +      +  DK  +   +++ GVP   + L      T++       P 
Sbjct: 68  YLQALGIPVV-NRPEVIEVCGDKWATSCALAAAGVPQPRTALTLEAETTLEVLEAWGYPV 126

Query: 129 VIKPLKGGSSLGIIVIK-KDQSIPLDLLQSSSW---NHGDQLLIEQY-VDGIELTCGVMG 183
           V+KP+ G  S G +V +  D+     LL+  ++    H    L E     G ++   V+G
Sbjct: 127 VMKPVVG--SWGRMVARVNDRDAAEALLEHKAFMGYQHQLHYLQEYVEKPGRDIRAFVVG 184

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D ++     + P      +    +   +    P      +  E+ RLA  A QA+G   +
Sbjct: 185 DRTIAAIYRSAPH-----WITNTARGGTASNCP------VTPELDRLAVKAAQAVGGGVV 233

Query: 244 SRSDFLFDPLSRKVFWLEIN-VQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           +  D    P    +   E+N           F       G         ++E A  LR
Sbjct: 234 A-VDLFETP--NGLVVNEVNHTM-------EFKNSVDTTGVDIP---RKILEYALALR 278


>gi|254562161|ref|YP_003069256.1| propionyl-CoA carboxylase subunit alpha [Methylobacterium
           extorquens DM4]
 gi|254269439|emb|CAX25405.1| propionyl-CoA carboxylase alpha subunit [Methylobacterium
           extorquens DM4]
          Length = 667

 Score = 71.3 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 74/220 (33%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H  +G   E       L    I +      A A   DK+ SK+  ++  V   P  L 
Sbjct: 77  AVHPGYGFLSERESFPKALAEAGIVFIGPNPGAIAAMGDKIESKKAAAAAEVSTVPGFLG 136

Query: 113 ---VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
                   +     I  P +IK   GG   G+ + +    +     ++ S        D+
Sbjct: 137 VIESPEHAVTIADEIGYPVMIKASAGGGGKGMRIAESADEVAEGFARAKSEASSSFGDDR 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+++ D   +   V+GD   +V  +   +        K             +  +  
Sbjct: 197 VFVEKFITDPRHIEIQVIGDKHGNVIYLGERECSIQRRNQK----VIEEAPSPLLDEETR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +++   A    +A+        +F      +  ++LE+N 
Sbjct: 253 RKMGEQAVALAKAVNYDSAGTVEF-VAGQDKSFYFLEMNT 291


>gi|253686649|ref|YP_003015839.1| acetyl-CoA carboxylase, biotin carboxylase [Pectobacterium
           carotovorum subsp. carotovorum PC1]
 gi|251753227|gb|ACT11303.1| acetyl-CoA carboxylase, biotin carboxylase [Pectobacterium
           carotovorum subsp. carotovorum PC1]
          Length = 447

 Score = 71.3 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 39/222 (17%), Positives = 81/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         L  DK+ +   +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAEQVERSGFIFIGPRAETIRLMGDKVSAITAMKKAGVPTVPGSDG 136

Query: 112 -LVNRFTMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
            L +    +  H   I  P +IK   GG   G+ V++ D+ +   +     ++ +  + D
Sbjct: 137 PLTDDMDANRVHAKRIGYPVIIKASGGGGGRGMRVVRSDKELEQSINMTRAEAKAAFNND 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+Y++    +   ++ D       +A           K          PA  I  +
Sbjct: 197 MVYMEKYLENPRHVEIQILADGQGHAVYLAERDCSMQRRHQK-----VVEEAPAPGITDE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + + +      A   I  RG    +FL+   + + +++E+N 
Sbjct: 252 LRRNIGDRCAKACIDINYRGAGTFEFLY--ENGEFYFIEMNT 291


>gi|240139750|ref|YP_002964227.1| propionyl-CoA carboxylase alpha subunit [Methylobacterium
           extorquens AM1]
 gi|240009724|gb|ACS40950.1| propionyl-CoA carboxylase alpha subunit [Methylobacterium
           extorquens AM1]
          Length = 667

 Score = 71.3 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 74/220 (33%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H  +G   E       L    I +      A A   DK+ SK+  ++  V   P  L 
Sbjct: 77  AVHPGYGFLSERESFPKALAEAGIVFIGPNPGAIAAMGDKIESKKAAAAAEVSTVPGFLG 136

Query: 113 ---VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
                   +     I  P +IK   GG   G+ + +    +     ++ S        D+
Sbjct: 137 VIESPEHAVTIADEIGYPVMIKASAGGGGKGMRIAESADEVAEGFARAKSEASSSFGDDR 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+++ D   +   V+GD   +V  +   +        K             +  +  
Sbjct: 197 VFVEKFITDPRHIEIQVIGDKHGNVIYLGERECSIQRRNQK----VIEEAPSPLLDEETR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +++   A    +A+        +F      +  ++LE+N 
Sbjct: 253 RKMGEQAVALAKAVNYDSAGTVEF-VAGQDKSFYFLEMNT 291


>gi|217964497|ref|YP_002350175.1| acetyl-CoA carboxylase, biotin carboxylase [Listeria monocytogenes
           HCC23]
 gi|217333767|gb|ACK39561.1| acetyl-CoA carboxylase, biotin carboxylase [Listeria monocytogenes
           HCC23]
 gi|307570939|emb|CAR84118.1| acetyl-CoA carboxylase, biotin carboxylase [Listeria monocytogenes
           L99]
          Length = 454

 Score = 71.3 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 83/220 (37%), Gaps = 16/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     + E   I +      A +    K  +++ +   GVP+ P    
Sbjct: 77  AIHPGYGFLAENADFAELCEDCNITFIGPSASAISQMGTKDVARETMRKAGVPIVPGSQG 136

Query: 111 ILVN-RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
           I+ +          I  P +IK   GG   GI V + ++ +   +     ++ +      
Sbjct: 137 IVKDVEDGKKIAKKIGYPVIIKATAGGGGKGIRVAENEEKLISGIQTTQQEAEAAFGDPG 196

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+Y+     +   V+ D   +V  +            K    + +   PA I     
Sbjct: 197 VYLEKYIQDFRHVEIQVLADNHGNVIHLGERDCSIQRRLQKLIEESPS---PA-IDEKTR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +++ + A  A +A+   G    +F+FD      +++E+N 
Sbjct: 253 QKMGKAAVKAAKAVNYSGAGTIEFIFDHHENNFYFMEMNT 292


>gi|153820045|ref|ZP_01972712.1| carbamoyl-phosphate synthase, large subunit [Vibrio cholerae NCTC
           8457]
 gi|126509415|gb|EAZ72009.1| carbamoyl-phosphate synthase, large subunit [Vibrio cholerae NCTC
           8457]
          Length = 859

 Score = 71.3 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 34/197 (17%), Positives = 77/197 (39%), Gaps = 10/197 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           LE   +P   +   A   + D+ R +Q V   G+    +  V      ++    I  P V
Sbjct: 436 LEAAGVPVIGTSPDAIDRAEDRERFQQAVQRLGLKQPDNATVTAIEQAIEKSREIGFPLV 495

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  +Q +     ++ S ++   +L+++++ D  E+    + D    
Sbjct: 496 VRPSYVLGGRAMEIVYDEQDLRRYFNEAVSVSNESPVLLDRFLDDATEVDVDAICDGERV 555

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           V    +   +    +    S +S   LPA  +  +I  +++         +G RG+    
Sbjct: 556 VIGGIMEHIE----QAGVHSGDSACSLPAYTLSQEIQDKMREQVEKLAFELGVRGLMNIQ 611

Query: 248 FLFDPLSRKVFWLEINV 264
           F       +V+ +E+N 
Sbjct: 612 FAV--KDNEVYLIEVNP 626


>gi|46578904|ref|YP_009712.1| phosphoribosylamine--glycine ligase [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120603496|ref|YP_967896.1| phosphoribosylamine--glycine ligase [Desulfovibrio vulgaris DP4]
 gi|46448316|gb|AAS94971.1| phosphoribosylamine--glycine ligase [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120563725|gb|ABM29469.1| phosphoribosylamine--glycine ligase [Desulfovibrio vulgaris DP4]
 gi|311232762|gb|ADP85616.1| phosphoribosylamine/glycine ligase [Desulfovibrio vulgaris RCH1]
          Length = 424

 Score = 71.3 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 43/217 (19%), Positives = 76/217 (35%), Gaps = 17/217 (7%)

Query: 29  AGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELL---EIPYTHSGI 84
            G  V   D D  ++       K DL      G   E  LV  + E L    IP      
Sbjct: 40  EGTNVPIADDDLPALVAFAREQKIDLVVP---GP--ELPLVLGLKEALVRENIPCFGPNA 94

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI--SPPYVIKPLKGGSSLGII 142
            A+ L   K  +K V+   GVP     + +       +++    P V+K     +  G++
Sbjct: 95  YAAQLEGSKAFAKNVMRDAGVPTADFAVFDEPADARAYVLEKGAPLVVKADGLAAGKGVV 154

Query: 143 VIKKDQSIPLDLLQ---SSSWNH-GDQLLIEQYVDGIELT--CGVMGDASLDVTEIAVPK 196
           V    +     L +     ++   GD +++E+ + G E +  C   GD  L +      K
Sbjct: 155 VASTTEEAVAALDEIMGRKAYGRAGDHVVVEECLIGEEASFLCFCDGDTVLPLPSAQDHK 214

Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           + F   +   +     +     +P   Y E+  +   
Sbjct: 215 AVFDGDKGPNTGGMGAYSPAPVLPASRYDEIIEMVIR 251


>gi|50121070|ref|YP_050237.1| urea amidolyase [Pectobacterium atrosepticum SCRI1043]
 gi|49611596|emb|CAG75044.1| urea amidolyase [Pectobacterium atrosepticum SCRI1043]
          Length = 1204

 Score = 71.3 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 33/204 (16%), Positives = 68/204 (33%), Gaps = 14/204 (6%)

Query: 70  AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---QHLISP 126
           A  E   I +             K R++++ ++ GVP+ P   +     D+      I  
Sbjct: 93  AACEKAGIAFVGPTAQQIGEFGLKHRARELAAAAGVPMTPGTPLLASLEDALVAADEIGY 152

Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQLLIEQYVD-GIELTCGV 181
           P ++K   GG  +G+       ++             +     + +E+ +D    +   +
Sbjct: 153 PVMLKSTAGGGGIGLTRCADAAALHAAWESVRRLGEQFFSDAGVFLERCIDRARHVEVQI 212

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGC 240
            GD    V  +           L+  +       PA  +P      +   A    + +  
Sbjct: 213 FGDGKGRVVALGE-----RDCSLQRRNQKVVEETPAPHLPETTRAALLAAAVKLGELVSY 267

Query: 241 RGISRSDFLFDPLSRKVFWLEINV 264
           R     +F++D      F+LE+N 
Sbjct: 268 RSAGTVEFIYDAERDAFFFLEVNT 291


>gi|327537941|gb|EGF24638.1| carbamoyl-phosphate synthase, large subunit [Rhodopirellula baltica
           WH47]
          Length = 1083

 Score = 71.3 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 51/278 (18%), Positives = 101/278 (36%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ + +                     V  V+A  +PD    
Sbjct: 29  SGTQACKALREEGYEVVLVNSNPATIMTDPATADATYIEPLTWQIVEKVIAKERPDALLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G  G +  +      +LE   +    +     A + ++ + KQ +   G+ VC    
Sbjct: 89  TLGGQTGLNVAMDLDANGVLEKYGVEMIAANAKVIAKAEEREQFKQAMDKIGLDVCKGFT 148

Query: 113 VNRFTMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           V       + L  +  P V++P       G  +          +      +   ++LIE+
Sbjct: 149 VRTLADARKALAEVGLPAVVRPSFTMGGSGSAIAYNKDDFDSLVQNGLDQSPVTEVLIEE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            + G  E    VM D   +V  I   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SIIGWKEYEMEVMRDCDDNVVIICAIEN----FDPMGVHTGDSITVAPAQTLSDKEYQRM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RDASLAVIREIGVETGGSNIQFAIEPDTGRMIVIEMNP 302



 Score = 61.7 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 41/289 (14%), Positives = 91/289 (31%), Gaps = 33/289 (11%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAI---- 71
           AL++ G +   +         D D S  L    L  +   N+       DG++       
Sbjct: 592 ALQEMGIESIMVNSNPETVSTDYDTSDILFFEPLTIEDVLNICDAMQ-PDGVIVQFGGQT 650

Query: 72  -------LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQH 122
                  LE   +P   + +     + D+     ++   G+   PS +            
Sbjct: 651 PLNLARGLEQAGVPIIGTSVDTIDTAEDRELFSSLIDELGLRQPPSGIARNMDEARVEAK 710

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGV 181
            I  P +++P        + +          + ++     G  +LI++++ D  E+    
Sbjct: 711 RIGYPALVRPSFVLGGRAMEICYDHSQFARYVAEAFIVADGQPVLIDRFLEDATEVDVDA 770

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241
           + D +  V    +   +       +S  ++  + P  +   +  E++         +   
Sbjct: 771 ISDGNNCVIMGIMEHIEEAGV---HSGDSACCIPPFSLTQPVLAEIRDATRKLAARLNVV 827

Query: 242 GISRSDFLFDPLSRKV--FWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           G+    F       +   + LE+N +   T     P +A   G     L
Sbjct: 828 GLMNIQFAVKMEGTQPTLYILEVNPRASRT----VPFVAKATGVPVANL 872


>gi|198428375|ref|XP_002119231.1| PREDICTED: similar to MGC81895 protein, partial [Ciona
           intestinalis]
          Length = 727

 Score = 71.3 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 41/221 (18%), Positives = 80/221 (36%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+     +     + +      A      K  SK+++S+  VP+      
Sbjct: 122 AIHPGYGFLSENAEFAELCSSNGVIFVGPPPSAIRDMGIKSTSKRIMSAANVPIIEGYHG 181

Query: 114 NRFT----MDSQHLISPPYVIKPLKGGSSLGIIVIKKD----QSIPLDLLQSSSWNHGDQ 165
              +    ++  H I  P +IK ++GG   G+ +        + +     ++      D 
Sbjct: 182 EEQSDSRLLEEAHGIGFPVMIKAVRGGGGKGMRIATSRDVFLEQLSSARSEAIKSFGDDV 241

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           +L+E+YVD    +   V GD   +               ++          PA  I L  
Sbjct: 242 MLVEKYVDRPRHVEVQVFGDHHGNAV-----HLFERDCSVQRRHQKVIEESPAPGISLRT 296

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              +   A  A +A+G  G    +F+ DP     +++E+N 
Sbjct: 297 RTNLGEAAVRAARAVGYVGAGTVEFVMDPQQN-FYFMEMNT 336


>gi|29840313|ref|NP_829419.1| acetyl-CoA carboxylase biotin carboxylase subunit [Chlamydophila
           caviae GPIC]
 gi|29834662|gb|AAP05297.1| acetyl-CoA carboxylase, biotin carboxylase [Chlamydophila caviae
           GPIC]
          Length = 451

 Score = 71.3 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 83/220 (37%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+    +I E   + +      + A   DK+ +KQ+      PV P    
Sbjct: 76  AVHPGYGFLSENPNFASICESCGLTFIGPSSESIATMGDKIAAKQLAKKIKCPVIPGSEG 135

Query: 111 ILVNRFT-MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS----IPLDLLQSSSWNHGDQ 165
           I+ +    +     I  P VIK + GG   GI ++++             ++ +  +   
Sbjct: 136 IIKDEAEGLKIAEKIGFPIVIKAVAGGGGRGIRIVREKDEFFRAFSAAKAEAEAGFNNPD 195

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE++++    L   V+GD   +   +            K             +  ++ 
Sbjct: 196 VYIEKFIENPRHLEVQVLGDKHGNYVHLGERDCTVQRRRQK----LIEETPSPILTPELR 251

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +V ++A    ++     +   +FL D   +K +++E+N 
Sbjct: 252 TKVGKVAVDLARSANYHSVGTVEFLLDK-DKKFYFMEMNT 290


>gi|254671002|emb|CBA07763.1| acetyl-CoA carboxylase, biotin carboxylase [Neisseria meningitidis
           alpha153]
 gi|308389960|gb|ADO32280.1| putative acetyl-CoA carboxylase biotin carboxylase component
           [Neisseria meningitidis alpha710]
          Length = 453

 Score = 71.3 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 79/222 (35%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---S 110
            +H  +G   E+      +E     +         L  DK+ +K  + + GVP  P    
Sbjct: 77  AVHPGYGFLAENADFAEQVEQSGFTFIGPKPDTIRLMGDKVSAKHAMIAAGVPCVPGSDG 136

Query: 111 ILVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
            L +     +     +  P +IK   GG   G+ V++K + +   +     ++ +     
Sbjct: 137 ALPDDGEEILKIADKVGYPVIIKASGGGGGRGMRVVEKKEDLLQSVEMTKAEAGAAFGNP 196

Query: 165 QLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+Y+     +   V+ D   +   +A           K          PA  I   
Sbjct: 197 MVYMERYLQRPRHVEIQVIADEHGNAIYLAERDCSMQRRHQK-----VIEEAPAPFITEK 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              ++      A + IG RG    +FL+     + F++E+N 
Sbjct: 252 ERAKIGNACADACKRIGYRGAGTFEFLY--EDGEFFFIEMNT 291


>gi|126337501|ref|XP_001376722.1| PREDICTED: similar to propionyl-CoA carboxylase alpha subunit
           [Monodelphis domestica]
          Length = 728

 Score = 71.3 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 73/221 (33%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      L    + +      A     DK+ SK +  +  V   P    
Sbjct: 138 AVHPGYGFLSENKEFAKCLAAEGVTFIGPDTHAIQAMGDKIESKLLAKNAKVNTIPGFDG 197

Query: 112 LVNRFTMDS--QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGD 164
           +V            I  P +IK   GG   G+ +   D+             +SS+   D
Sbjct: 198 VVKDADEAVRIAREIGYPVMIKASAGGGGKGMRIAWDDEETRDGFRFSSQEAASSFG-DD 256

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           +LLIE+++D    +   V+ D   +   +   +        K             +  + 
Sbjct: 257 RLLIEKFIDNPRHVEIQVLCDKKGNALWLNERECSIQRRNQK----VVEEAPSTFLDPET 312

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +   A    +A+        +FL D      ++LE+N 
Sbjct: 313 RRAMGEQAVALARAVKYSSAGTVEFLVDSRKN-FYFLEMNT 352


>gi|77461860|ref|YP_351367.1| acetyl-CoA carboxylase subunit A [Pseudomonas fluorescens Pf0-1]
 gi|77385863|gb|ABA77376.1| acetyl-CoA carboxylase carboxyltransferase subunit alpha
           [Pseudomonas fluorescens Pf0-1]
          Length = 481

 Score = 71.3 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 77/221 (34%), Gaps = 20/221 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            LH  +G   E+  +  I     I +            DK  +++ +   GVPV P    
Sbjct: 86  ALHPGYGFLSENAELADICAERGIKFIGPSAEVIRRMGDKTEARRSMIKAGVPVTPGTEG 145

Query: 114 N----RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGD 164
           N       +     I  P ++K   GG   GI      + +  +        + ++   +
Sbjct: 146 NVSGIEEALSEGDRIGYPVMLKATSGGGGRGIRRCNSREELEQNFPRVISEATKAFGSAE 205

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDI 223
             L +  V+   +   ++GD+  +V  +            K        + P  ++  + 
Sbjct: 206 VFLEKCIVNPKHIEAQILGDSFGNVVHLFERDCSIQRRNQKL-----IEIAPSPQLTPEQ 260

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              +  L+  A +A+G       +FL      +V+++E+N 
Sbjct: 261 RAYIGDLSVRAAKAVGYENAGTVEFLL--AEGEVYFMEMNT 299


>gi|29654582|ref|NP_820274.1| carbamoyl-phosphate synthase large chain [Coxiella burnetii RSA
           493]
 gi|161830009|ref|YP_001597134.1| carbamoyl-phosphate synthase, large subunit [Coxiella burnetii RSA
           331]
 gi|29541850|gb|AAO90788.1| carbamoyl-phosphate synthase large chain [Coxiella burnetii RSA
           493]
 gi|161761876|gb|ABX77518.1| carbamoyl-phosphate synthase, large subunit [Coxiella burnetii RSA
           331]
          Length = 1073

 Score = 71.3 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 46/278 (16%), Positives = 96/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D D              +  ++   KPD    
Sbjct: 29  SGTQACRALREEGYRVILVNSNPATIMTDPDLADATYIEPVHWEVIAKIIEKEKPDALLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G  G +  +    + ILE   +    +   A   + D+   ++ +   G+    S L
Sbjct: 89  TMGGQTGLNCALDLVREGILEKYGVELIGASREAIDKAEDRSLFQKAMLKIGLQTPRSGL 148

Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +      +    +  P +I+P       G  +            +    +   ++LI++
Sbjct: 149 AHSMEDAWKILEQVGFPAIIRPSFTLGGSGGGIAYNRDEFLAICTRGLELSPTTEILIDE 208

Query: 171 YVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + + +   ++   D           +S  V PA+ +    Y+ +
Sbjct: 209 SIAGWKEFELEVVRDKNDNCIIVCSIENFDPMGIHT----GDSITVAPAQTLTDKEYQRM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  A    + IG   G S   F  +P   ++  +E+N 
Sbjct: 265 RDAAIAILREIGVETGGSNVQFGINPDDGRMIVIEMNP 302



 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 39/232 (16%), Positives = 85/232 (36%), Gaps = 26/232 (11%)

Query: 67  LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQHLI 124
            + + L    +P   +   A   + D+ R + ++   G+   P+  V      +    + 
Sbjct: 654 KLASALAKAGVPIVGTTPDAIDRAEDRERFQALIQGVGLRQPPNGTVRSVEEGLRLAKVF 713

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL--------IEQYVDGIE 176
           + P +++P        + VI  ++ +   + +    + G+ LL        IE  VD I 
Sbjct: 714 AYPLIVRPSYVLGGRAMKVIYSEKELTRYMTKDVIVSEGEPLLLDRFLDDAIEVDVDAIC 773

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
               V+    L+  E A   S            +S    P  +  +I ++++    L  +
Sbjct: 774 DGENVLIGGILEHIEQAGVHSG----------DSSCAFPPHSLSPEIQEQLREQVRLIAK 823

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
            +G  G+  + F       +++ LE+N +   T     P +A   G    ++
Sbjct: 824 ELGVVGLINTQFAI--QENEIYVLEVNPRASRT----VPFLAKATGMPLAKI 869


>gi|62181888|ref|YP_218305.1| acetyl-CoA carboxylase biotin carboxylase subunit [Salmonella
           enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
 gi|62129521|gb|AAX67224.1| acetyl CoA carboxylase, biotin carboxylase subunit [Salmonella
           enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
 gi|322716378|gb|EFZ07949.1| acetyl-CoA carboxylase biotin carboxylase subunit [Salmonella
           enterica subsp. enterica serovar Choleraesuis str. A50]
          Length = 449

 Score = 71.3 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 42/222 (18%), Positives = 81/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         L  DK+ +   +   GVP  P    
Sbjct: 77  AIHPGYGFLSENANFAEQVERSGFIFIGPKADTIRLMGDKVSAITAMKKAGVPTVPGSDG 136

Query: 112 -LVNRFTMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
            L +    +  H   I  P +IK   GG   G+ V++ D  +   +     ++ +    D
Sbjct: 137 PLGDDMNANRAHAKRIGYPVIIKASGGGGGRGMRVVRSDAELAQSISMTKAEAKAAFSND 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+Y++    +   V+ D   +   +A           K          PA  I  +
Sbjct: 197 MVYMEKYLENPRHIEIQVLADGQGNAIYLAERDCSMQRRHQK-----VVEEAPAPGITPE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + + +      A   IG RG    +FLF   + + +++E+N 
Sbjct: 252 LRRYIGEHCAKACVDIGYRGAGTFEFLF--ENGEFYFIEMNT 291


>gi|53803859|ref|YP_114289.1| carbamoyl-phosphate synthase, large subunit [Methylococcus
           capsulatus str. Bath]
 gi|53757620|gb|AAU91911.1| carbamoyl-phosphate synthase, large subunit [Methylococcus
           capsulatus str. Bath]
          Length = 1072

 Score = 71.3 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 51/286 (17%), Positives = 109/286 (38%), Gaps = 31/286 (10%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH-----GNFGEDG---- 66
           AL + GF+   I         D D S  L    L  +    V+H     G   + G    
Sbjct: 587 ALREDGFETIMINCNPETVSTDFDTSDRLYFEPLTLEDVLEVVHLEKPKGVIVQYGGQTP 646

Query: 67  -LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHL 123
             +   LE   +P   +   +  L+ D+ R ++++    +   P+         +     
Sbjct: 647 LKLARALEAAGVPIIGTSPDSIDLAEDRERFQKLIDRLNLKQPPNRTARSLEEALRGAQE 706

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVM 182
           I  P V++P        + ++  D  +   +L++ S ++   +L+++++ D IE+    +
Sbjct: 707 IGYPLVVRPSYVLGGRAMEIVFNDDDLKRYMLEAVSVSNESPVLLDRFLSDAIEMDVDAV 766

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  ++  + P  +  DI   V+    L  +A+G  G
Sbjct: 767 ADGQRVMIGGLMQHIEQAGV---HSGDSACSIPPYDLRADIQDRVREQVRLLAEALGVVG 823

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           +  + F       ++F LE+N +   T     P ++   GY   ++
Sbjct: 824 LMNTQFAI--QDDEIFVLEVNPRASRT----VPFVSKATGYPLAKV 863



 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 47/279 (16%), Positives = 102/279 (36%), Gaps = 37/279 (13%)

Query: 18  SGKACASALEDAGFKV----------------------SQIDVDRSVGLVLAHLKPDLAF 55
           SG     AL++ G++V                        ID  ++V  ++   +PD   
Sbjct: 29  SGAQACKALKEEGYRVILVNSNPATIMTDPEMADATYIEPIDW-QTVARIIEKERPDALL 87

Query: 56  NVLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
             + G    +  +    + +LE   +    +   A A + D+ + ++ +   G+ V  S 
Sbjct: 88  PTMGGQTALNCALDLDREGVLERFGVEMIGASREAIAKAEDRDQFRKAMIKIGLSVPKSE 147

Query: 112 LVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
           + +     +    ++  P +I+P       G  +    +       +    +   +LLIE
Sbjct: 148 VAHSLEEALSVLDMVGYPAIIRPSFTLGGSGGGIAYNREEFVEICERGLELSPTHELLIE 207

Query: 170 QYVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKE 226
           + V G  E    V+ D + + +   ++   D           +S  V PA+ +    Y+ 
Sbjct: 208 ESVLGWKEYEMEVVRDRADNCIIVCSIENLDPMGVHT----GDSITVAPAQTLTDKEYQI 263

Query: 227 VQRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
           ++  +    + IG   G S   F  +P   ++  +E+N 
Sbjct: 264 MRDASIAVLREIGVDTGGSNVQFAVNPRDGRLIVIEMNP 302


>gi|32477331|ref|NP_870325.1| carbamoyl-phosphate synthase (glutamine-hydrolyzing) large chain
           [Rhodopirellula baltica SH 1]
 gi|81835273|sp|Q7UJ58|CARB_RHOBA RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|32447882|emb|CAD77400.1| carbamoyl-phosphate synthase (glutamine-hydrolyzing) large chain
           [Rhodopirellula baltica SH 1]
          Length = 1083

 Score = 71.3 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 51/278 (18%), Positives = 101/278 (36%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ + +                     V  V+A  +PD    
Sbjct: 29  SGTQACKALREEGYEVVLVNSNPATIMTDPATADATYIEPLTWQIVEKVIAKERPDALLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G  G +  +      +LE   +    +     A + ++ + KQ +   G+ VC    
Sbjct: 89  TLGGQTGLNVAMDLDANGVLEKYGVEMIAANAKVIAKAEEREQFKQAMDKIGLDVCKGFT 148

Query: 113 VNRFTMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           V       + L  +  P V++P       G  +          +      +   ++LIE+
Sbjct: 149 VRTLADARKALAEVGLPAVVRPSFTMGGSGSAIAYNKDDFDSLVQNGLDQSPVTEVLIEE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            + G  E    VM D   +V  I   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SIIGWKEYEMEVMRDCDDNVVIICAIEN----FDPMGVHTGDSITVAPAQTLSDKEYQRM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RDASLAVIREIGVETGGSNIQFAIEPDTGRMIVIEMNP 302



 Score = 61.7 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 41/289 (14%), Positives = 91/289 (31%), Gaps = 33/289 (11%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAI---- 71
           AL++ G +   +         D D S  L    L  +   N+       DG++       
Sbjct: 592 ALQEMGIESIMVNSNPETVSTDYDTSDILFFEPLTIEDVLNICDAMQ-PDGVIVQFGGQT 650

Query: 72  -------LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQH 122
                  LE   +P   + +     + D+     ++   G+   PS +            
Sbjct: 651 PLNLARGLEQAGVPIIGTSVDTIDTAEDRELFSSLIDELGLRQPPSGIARNMDEARVEAK 710

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGV 181
            I  P +++P        + +          + ++     G  +LI++++ D  E+    
Sbjct: 711 RIGYPALVRPSFVLGGRAMEICYDHSQFARYVAEAFIVADGQPVLIDRFLEDATEVDVDA 770

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241
           + D +  V    +   +       +S  ++  + P  +   +  E++         +   
Sbjct: 771 ISDGNDCVIMGIMEHIEEAGV---HSGDSACCIPPFSLTQPVLAEIRDATRKLAARLNVV 827

Query: 242 GISRSDFLFDPLSRKV--FWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           G+    F       +   + LE+N +   T     P +A   G     L
Sbjct: 828 GLMNIQFAVKMEGTQPTLYILEVNPRASRT----VPFVAKATGVPVANL 872


>gi|317055158|ref|YP_004103625.1| ATP-dependent carboxylate-amine ligase domain-containing protein
           [Ruminococcus albus 7]
 gi|315447427|gb|ADU20991.1| ATP-dependent carboxylate-amine ligase domain protein ATP-grasp
           [Ruminococcus albus 7]
          Length = 420

 Score = 71.3 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 36/150 (24%), Positives = 62/150 (41%), Gaps = 2/150 (1%)

Query: 91  MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ-HLISPPYVIKPLKGGSSLGIIVIKKDQS 149
            DK ++K ++ S GV V  + ++N+   D     +S P V+KP     S GI V+   + 
Sbjct: 103 RDKKQAKDLLRSLGVSVPENRIINKDFSDEDIKGLSFPLVVKPSNAWGSKGIYVVNNSEE 162

Query: 150 IPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209
           + L   +S+  +H +++L+E+Y  G E        A   V  I+    +    E K    
Sbjct: 163 LRLYAEKSAEISHSEKVLVEEYSKGGEYNITSF-VAEGKVYVISCGDREKTRCEDKSIPR 221

Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
            S          DI +  +        A+G
Sbjct: 222 LSRIFYNTSRHDDIIEAARVTLQKFADAVG 251


>gi|297694348|ref|XP_002824441.1| PREDICTED: propionyl-CoA carboxylase alpha chain,
           mitochondrial-like isoform 2 [Pongo abelii]
          Length = 702

 Score = 71.3 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 76/220 (34%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      L   ++ +      A     DK+ SK +     V   P    
Sbjct: 112 AVHPGYGFLSENKEFARCLAAEDVIFIGPDTHAIQAMGDKIESKLLAKKAEVNTIPGFDG 171

Query: 112 LVNRFTMDS--QHLISPPYVIKPLKGGSSLGIIVIKKDQS----IPLDLLQSSSWNHGDQ 165
           +V            I  P +IK   GG   G+ +   D+       L   +++S    D+
Sbjct: 172 VVKDAEEAVRIAREIGYPVMIKASAGGGGKGMRIAWDDEETRDGFRLSSQEAASSFGDDR 231

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           LLIE+++D    +   V+GD   +   +   +        K             + ++  
Sbjct: 232 LLIEKFIDNPRHIEIQVLGDKHGNALWLNERECSIQRRNQK----VVEEAPSIFLDVETR 287

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +   A    +A+        +FL D      ++LE+N 
Sbjct: 288 RAMGEQAVALARAVKYSSAGTVEFLVDSKKN-FYFLEMNT 326


>gi|293552837|ref|ZP_06673495.1| phosphoribosylaminoimidazole carboxylase, ATPase subunit
           [Enterococcus faecium E1039]
 gi|291602971|gb|EFF33165.1| phosphoribosylaminoimidazole carboxylase, ATPase subunit
           [Enterococcus faecium E1039]
          Length = 377

 Score = 71.3 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 37/207 (17%), Positives = 84/207 (40%), Gaps = 15/207 (7%)

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTMDSQ 121
           E+  V+A+  +L + +   G    A++ D++  K  + +  + + P   +       D+ 
Sbjct: 81  ENVSVEALNAILPMSFIPQGTDLLAITQDRLLEKSFLETNNIVIAPYATIVSPTDIQDAI 140

Query: 122 HLISPPYVIKPLKGG-SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTC 179
             I  P V+K  +GG    G  V+K    +   +            ++E ++    E++ 
Sbjct: 141 DGIGYPCVLKTTRGGYDGKGQYVLKSRVDLAPAMDL----LREGTCVLEAWIPFEKEISI 196

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
            V G+   D T   V ++        ++++    + PA I  D+ +E +R+A +  +A+ 
Sbjct: 197 MVAGNGQGDFTTFPVVENIH------HNNILHETIAPAAIDQDVIEEAERIARVIAEAVS 250

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQP 266
             G    +         ++  E+  +P
Sbjct: 251 LSGALGVEMFLTKTGG-LYVNELAPRP 276


>gi|227114023|ref|ZP_03827679.1| acetyl-CoA carboxylase biotin carboxylase subunit [Pectobacterium
           carotovorum subsp. brasiliensis PBR1692]
          Length = 447

 Score = 71.3 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 39/222 (17%), Positives = 81/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         L  DK+ +   +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAEQVERSGFIFIGPRAETIRLMGDKVSAITAMKKAGVPTVPGSDG 136

Query: 112 -LVNRFTMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
            L +    +  H   I  P +IK   GG   G+ V++ D+ +   +     ++ +  + D
Sbjct: 137 PLTDDMDANRVHAKRIGYPVIIKASGGGGGRGMRVVRSDKELEQSINMTRAEAKAAFNND 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+Y++    +   ++ D       +A           K          PA  I  +
Sbjct: 197 MVYMEKYLENPRHVEIQILADGQGHAVYLAERDCSMQRRHQK-----VVEEAPAPGITDE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + + +      A   I  RG    +FL+   + + +++E+N 
Sbjct: 252 LRRNIGDRCAKACIDINYRGAGTFEFLY--ENGEFYFIEMNT 291


>gi|255654333|ref|ZP_05399742.1| Dehydrogenase [Clostridium difficile QCD-23m63]
 gi|296452622|ref|ZP_06894316.1| phosphoribosylamine-glycine ligase [Clostridium difficile NAP08]
 gi|296880966|ref|ZP_06904912.1| phosphoribosylamine-glycine ligase [Clostridium difficile NAP07]
 gi|296258583|gb|EFH05484.1| phosphoribosylamine-glycine ligase [Clostridium difficile NAP08]
 gi|296427987|gb|EFH13888.1| phosphoribosylamine-glycine ligase [Clostridium difficile NAP07]
          Length = 410

 Score = 71.3 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 38/206 (18%), Positives = 66/206 (32%), Gaps = 36/206 (17%)

Query: 34  SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYT------------H 81
             IDVD      +  +  D            DG++    + L  PY              
Sbjct: 44  EAIDVDVFDFDKIKSIAIDKKI---------DGILTGFTDSLMKPYVYVANELNLPCVIS 94

Query: 82  SGILASALSMDKMRSKQVVSSCGVPVCPSILVNR-FTMDSQHLISPPYVIKPLKGGSSLG 140
              L S    +K   K+   + G+P     +V     ++    ++ P VIKP+ G  S G
Sbjct: 95  CNQLESV--TNKAVMKKYFKNNGIPTTDYCIVESLKDLEKIQELNFPLVIKPVDGYGSRG 152

Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL-----------TCGVMGDASLDV 189
           +  +   + +      S   +   Q++IE++ +  E+               +GD  L  
Sbjct: 153 VYFVSNIEELIEKFEYSKEVSQDGQVIIEEFYESEEIQGLAWVHNGESHVFYIGDRELVN 212

Query: 190 TEIA-VPKSDFYSYELKYSSLNSTHV 214
                  K D   Y  KY       +
Sbjct: 213 IHTGRAGKPDRLIYPSKYCFQYEEEI 238


>gi|169630348|ref|YP_001703997.1| pyruvate carboxylase [Mycobacterium abscessus ATCC 19977]
 gi|169242315|emb|CAM63343.1| Probable pyruvate carboxylase PCA [Mycobacterium abscessus]
          Length = 1127

 Score = 71.3 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 39/247 (15%), Positives = 84/247 (34%), Gaps = 18/247 (7%)

Query: 28  DAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87
           + G  V        V     +   D  +   +G   E+  + A      I +        
Sbjct: 53  EKGHPVRAYLSVSEVVNAARNAGADAIYPG-YGFLSENPDLAAACAEAGITFVGPPADVL 111

Query: 88  ALSMDKMRSKQVVSSCGVPVC----PSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIV 143
            L+ +K R+       G+PV     PS  V    + +   +  P  +K + GG   G+  
Sbjct: 112 ELTGNKARAIAAAREAGLPVLASSEPSASVEEL-LAAAESMEFPVFVKAVAGGGGRGMRR 170

Query: 144 IKKDQSIPLDLLQS-----SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD 198
           + +   +   +  +     S++      L +  ++   +   ++ D + +V  +      
Sbjct: 171 VAERDQLREAIEAASREAESAFGDPTVFLEQAVINPRHIEVQILADTAGNVIHLYE---- 226

Query: 199 FYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
                ++        + PA  +P ++ +++   A    + IG       +FL D     V
Sbjct: 227 -RDCSVQRRHQKVIELAPAPNLPPELREKICSDAVAFARHIGYSCAGTVEFLLDERGHHV 285

Query: 258 FWLEINV 264
           F  E+N 
Sbjct: 286 FI-EMNP 291


>gi|77360320|ref|YP_339895.1| hypothetical protein PSHAa1377 [Pseudoalteromonas haloplanktis
           TAC125]
 gi|76875231|emb|CAI86452.1| conserved protein of unknown function [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 464

 Score = 71.3 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 31/185 (16%), Positives = 71/185 (38%), Gaps = 15/185 (8%)

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSLGIIVI 144
              +K+      +   VP   +++V   + D+    +   + P V+K  +G  S G+  +
Sbjct: 255 RCCNKVYLHDAFNYQKVPSLKTVVVADQSSDTLEQLEAAFTYPLVLKMPEGSFSKGVYKV 314

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKS--DFYS 201
                +   L  +  +     +L ++Y+    +   GV+   ++      + ++    Y+
Sbjct: 315 TNRAELEAKL--TELFEFSALVLAQEYMYTEYDWRVGVLNGRAIYACRYLMARNHWQIYN 372

Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
           ++ K         LP     ++ K V   A  A + +G +G+   D        + + LE
Sbjct: 373 HDAKRFFSGGFETLP---TFELPKAVLDAALKACKTVG-KGLYGVD--VKEHQGRAYVLE 426

Query: 262 INVQP 266
           +N  P
Sbjct: 427 VNDNP 431


>gi|16078616|ref|NP_389435.1| carbamoyl phosphate synthase large subunit [Bacillus subtilis
           subsp. subtilis str. 168]
 gi|221309426|ref|ZP_03591273.1| carbamoyl phosphate synthase large subunit [Bacillus subtilis
           subsp. subtilis str. 168]
 gi|221313751|ref|ZP_03595556.1| carbamoyl phosphate synthase large subunit [Bacillus subtilis
           subsp. subtilis str. NCIB 3610]
 gi|221318675|ref|ZP_03599969.1| carbamoyl phosphate synthase large subunit [Bacillus subtilis
           subsp. subtilis str. JH642]
 gi|221322947|ref|ZP_03604241.1| carbamoyl phosphate synthase large subunit [Bacillus subtilis
           subsp. subtilis str. SMY]
 gi|115626|sp|P25994|CARB_BACSU RecName: Full=Carbamoyl-phosphate synthase pyrimidine-specific
           large chain; AltName: Full=Carbamoyl-phosphate
           synthetase ammonia chain
 gi|143390|gb|AAA21270.1| carbamyl phosphate synthetase [Bacillus subtilis]
 gi|2633925|emb|CAB13426.1| pyrimidine-specific carbamoyl-phosphate synthetase (large subunit)
           [Bacillus subtilis subsp. subtilis str. 168]
          Length = 1071

 Score = 71.3 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 33/225 (14%), Positives = 79/225 (35%), Gaps = 13/225 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--QHLISPPYV 129
           L    +    + +     + D+ + +Q +   GVP                   I  P +
Sbjct: 646 LSARGVKILGTSLEDLDRAEDRDKFEQALGELGVPQPLGKTATSVNQAVSIASDIGYPVL 705

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           ++P        + ++  ++ +   +  +   N    +LI++Y+ G E+    + D    V
Sbjct: 706 VRPSYVLGGRAMEIVYHEEELLHYMKNAVKINPQHPVLIDRYLTGKEIEVDAVSDGETVV 765

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               +   +           +S  V P + +  DI K++++      + +   G+    F
Sbjct: 766 IPGIMEHIERAGVHS----GDSIAVYPPQSLTEDIKKKIEQYTIALAKGLNIVGLLNIQF 821

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +      +V+ LE+N +   T     P ++   G     L   ++
Sbjct: 822 VLSQ--GEVYVLEVNPRSSRT----VPFLSKITGIPMANLATKII 860



 Score = 66.3 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 47/297 (15%), Positives = 110/297 (37%), Gaps = 36/297 (12%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL++ G++V  ++ +                       +  ++   +PD     L G  G
Sbjct: 36  ALKEEGYEVILVNSNPATIMTDTEMADRVYIEPLTPEFLTRIIRKERPDAILPTLGGQTG 95

Query: 64  EDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
            +  V    + +L    +    + + A   + D+   + +++    PV  S +++     
Sbjct: 96  LNLAVELSERGVLAECGVEVLGTKLSAIQQAEDRDLFRTLMNELNEPVPESEIIHSLEEA 155

Query: 120 SQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IE 176
            +    I  P +++P       G  +   +  +   +      +   Q L+E+ + G  E
Sbjct: 156 EKFVSQIGFPVIVRPAYTLGGTGGGICSNETELKEIVENGLKLSPVHQCLLEKSIAGYKE 215

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAH 235
           +   VM D+      I V   +     +   + +S  V P++ +    Y+ ++ ++    
Sbjct: 216 IEYEVMRDSQDHA--IVVCNMENID-PVGIHTGDSIVVAPSQTLSDREYQLLRNVSLKLI 272

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +A+G  G        DP S + + +E+N  P ++  S     +   GY   +L   +
Sbjct: 273 RALGIEGGCNVQLALDPDSFQYYIIEVN--PRVSRSS--ALASKATGYPIAKLAAKI 325


>gi|312884761|ref|ZP_07744462.1| acetyl-CoA carboxylase biotin carboxylase subunit [Vibrio
           caribbenthicus ATCC BAA-2122]
 gi|309367674|gb|EFP95225.1| acetyl-CoA carboxylase biotin carboxylase subunit [Vibrio
           caribbenthicus ATCC BAA-2122]
          Length = 447

 Score = 71.3 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 81/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         +  DK+ +   +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAEQVERSGFIFVGPKAETIRIMGDKVSAINSMKKAGVPCVPGSDG 136

Query: 112 LVNRFTMDSQH---LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
            +N     ++     I  P +IK   GG   G+ V++ +  +   +     ++ +  + D
Sbjct: 137 PLNDDDQANKAHAKRIGYPVIIKASGGGGGRGMRVVRSESELVEAIAMTRAEAKAAFNND 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E++++    +   V+ D   +   +            K          PA  I  +
Sbjct: 197 MVYMEKFLENPRHVEVQVIADGQGNAIHLGERDCSMQRRHQK-----VVEEAPAPGITEE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + K +      A   IG RG    +FL+   + + +++E+N 
Sbjct: 252 MRKYIGERCTRACIEIGYRGAGTFEFLY--ENGEFYFIEMNT 291


>gi|300715268|ref|YP_003740071.1| carbamoyl-phosphate synthase large chain [Erwinia billingiae Eb661]
 gi|299061104|emb|CAX58211.1| Carbamoyl-phosphate synthase large chain [Erwinia billingiae Eb661]
          Length = 1074

 Score = 71.3 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 44/278 (15%), Positives = 98/278 (35%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D +              V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +    Q +LE   +    +   A   + D+ R  + + S G+    S  
Sbjct: 89  TMGGQTALNCALELERQGVLEEFGVAMIGATADAIDKAEDRQRFDKAMKSIGLDTARSGF 148

Query: 113 VNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +           +  P +I+P       G  +    +       +    +  ++LLI++
Sbjct: 149 AHNMEEAYAVAADVGFPCIIRPSFTMGGSGGGIAYNREEFEEICERGLDLSPTNELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + +   +   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIEN----FDAMGIHTGDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RNASMAVLREIGVETGGSNVQFSVNPANGRLIIIEMNP 302



 Score = 64.0 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 76/197 (38%), Gaps = 10/197 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           LE   +P   +   A   + D+ R +Q V   G+    +  V      ++   +I  P V
Sbjct: 654 LEAAGVPIIGTSPDAIDRAEDRERFQQAVERLGLKQPANSTVTAIEQAVEKAAVIGYPLV 713

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  D  +      + + ++   +L+++++ D +E+    + D    
Sbjct: 714 VRPSYVLGGRAMEIVYDDIDLKRYFQNAVAVSNDAPVLLDRFLDDAVEVDVDAICDGERV 773

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           +    +   +    +    S +S   LPA  +  +I   +++        +  RG+    
Sbjct: 774 LIGGIMEHIE----QAGVHSGDSACSLPAYTLSKEIQDVMRQQVEKLAFELCVRGLMNVQ 829

Query: 248 FLFDPLSRKVFWLEINV 264
           F       +V+ +E+N 
Sbjct: 830 FAV--KDNEVYLIEVNP 844


>gi|46907583|ref|YP_013972.1| acetyl-CoA carboxylase biotin carboxylase subunit [Listeria
           monocytogenes serotype 4b str. F2365]
 gi|226223958|ref|YP_002758065.1| acetyl-CoA carboxylase subunit (biotin carboxylase subunit)
           [Listeria monocytogenes Clip81459]
 gi|254824584|ref|ZP_05229585.1| acetyl-CoA carboxylase [Listeria monocytogenes FSL J1-194]
 gi|254852595|ref|ZP_05241943.1| acetyl-CoA carboxylase [Listeria monocytogenes FSL R2-503]
 gi|254932328|ref|ZP_05265687.1| acetyl-CoA carboxylase [Listeria monocytogenes HPB2262]
 gi|255520787|ref|ZP_05388024.1| acetyl-CoA carboxylase biotin carboxylase subunit [Listeria
           monocytogenes FSL J1-175]
 gi|290893534|ref|ZP_06556517.1| acetyl-CoA carboxylase [Listeria monocytogenes FSL J2-071]
 gi|300765403|ref|ZP_07075385.1| acetyl-CoA carboxylase, biotin carboxylase [Listeria monocytogenes
           FSL N1-017]
 gi|46880851|gb|AAT04149.1| acetyl-CoA carboxylase, biotin carboxylase [Listeria monocytogenes
           serotype 4b str. F2365]
 gi|225876420|emb|CAS05129.1| acetyl-CoA carboxylase subunit (biotin carboxylase subunit)
           [Listeria monocytogenes serotype 4b str. CLIP 80459]
 gi|258605908|gb|EEW18516.1| acetyl-CoA carboxylase [Listeria monocytogenes FSL R2-503]
 gi|290556879|gb|EFD90410.1| acetyl-CoA carboxylase [Listeria monocytogenes FSL J2-071]
 gi|293583884|gb|EFF95916.1| acetyl-CoA carboxylase [Listeria monocytogenes HPB2262]
 gi|293593822|gb|EFG01583.1| acetyl-CoA carboxylase [Listeria monocytogenes FSL J1-194]
 gi|300513840|gb|EFK40905.1| acetyl-CoA carboxylase, biotin carboxylase [Listeria monocytogenes
           FSL N1-017]
 gi|313608938|gb|EFR84690.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Listeria
           monocytogenes FSL F2-208]
 gi|328467495|gb|EGF38564.1| acetyl-CoA carboxylase biotin carboxylase subunit [Listeria
           monocytogenes 1816]
 gi|328475071|gb|EGF45859.1| acetyl-CoA carboxylase biotin carboxylase subunit [Listeria
           monocytogenes 220]
 gi|332311798|gb|EGJ24893.1| Biotin carboxylase 1 [Listeria monocytogenes str. Scott A]
          Length = 454

 Score = 71.3 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 83/220 (37%), Gaps = 16/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     + E   I +      A +    K  +++ +   GVP+ P    
Sbjct: 77  AIHPGYGFLAENADFAELCEDCNITFIGPSASAISQMGTKDVARETMRKAGVPIVPGSQG 136

Query: 111 ILVN-RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
           I+ +          I  P +IK   GG   GI V + ++ +   +     ++ +      
Sbjct: 137 IVKDVEDGKKIAKKIGYPVIIKATAGGGGKGIRVAENEEKLISGIQTTQQEAEAAFGDPG 196

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+Y+     +   V+ D   +V  +            K    + +   PA I     
Sbjct: 197 VYLEKYIQDFRHVEIQVLADNHGNVIHLGERDCSIQRRLQKLIEESPS---PA-IDEKTR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +++ + A  A +A+   G    +F+FD      +++E+N 
Sbjct: 253 QKMGKAAVKAAKAVNYSGAGTIEFIFDHHENNFYFMEMNT 292


>gi|88801929|ref|ZP_01117457.1| Acetyl-CoA carboxylase, biotin carboxylase [Polaribacter irgensii
           23-P]
 gi|88782587|gb|EAR13764.1| Acetyl-CoA carboxylase, biotin carboxylase [Polaribacter irgensii
           23-P]
          Length = 445

 Score = 71.3 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 80/221 (36%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     + E   I +  +         DK  +K  + + GVP  P    
Sbjct: 77  AIHPGYGFLSENAKFSKLCEEHHIKFIGATGEMIDKMGDKANAKATMKAAGVPCVPGSEG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS-----SSWNHGD 164
            IL  +  +        P ++K   GG   G+  + K + +      +     +++ + D
Sbjct: 137 IILDFKDCIKVALETGYPVMLKASAGGGGKGMRAVWKAEDLKDAWDSARQESKAAFGNDD 196

Query: 165 QLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
             + E+ ++    +   V+GD+      ++           K     +       +   +
Sbjct: 197 MYM-EKLIEEPRHIEIQVIGDSFGKACHLSERDCSVQRRHQK----LTEETPSPFMTDVL 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +++   A LA + I   G    +FL D   R  F++E+N 
Sbjct: 252 REKMGNAAVLAAEFIKYEGAGTVEFLVDKH-RNFFFMEMNT 291


>gi|328772297|gb|EGF82335.1| hypothetical protein BATDEDRAFT_9370 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 1195

 Score = 71.3 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 82/221 (37%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+     ++E   I +            +K +++ +    GVPV P    
Sbjct: 109 AIHPGYGFLAENAQFAEMVEDAGIAFVGPPPKVIDACGNKTKARDLAIKAGVPVVPGSDG 168

Query: 114 NRFTMDSQHLI----SPPYVIKPLKGGSSLGIIVIKKDQS----IPLDLLQSSSWNHGDQ 165
              T++           P +IK + GG   G+ V++  +S          ++ +      
Sbjct: 169 PVETVEQAQAFIKKYGLPVIIKAVMGGGGRGMRVVRDIESVPNLFERARSEALAAFGDGT 228

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDI 223
             +E++++    +   ++ D     T   V         ++        + PA  IP  +
Sbjct: 229 CFLERFIERPRHIEVQLLAD-----TYGNVVHLFERDCSVQRRHQKVVEMGPASDIPESL 283

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +   A    +++G R    ++FL D  +   +++EIN 
Sbjct: 284 RQTILNDAVKLAKSVGYRNAGTAEFLVDAQNNH-YFIEINP 323


>gi|218777877|ref|YP_002429195.1| carbamoyl phosphate synthase large subunit [Desulfatibacillum
           alkenivorans AK-01]
 gi|218759261|gb|ACL01727.1| Carbamoyl phosphate synthetase, large subunit [Desulfatibacillum
           alkenivorans AK-01]
          Length = 1066

 Score = 71.3 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 50/277 (18%), Positives = 98/277 (35%), Gaps = 34/277 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL   G+++  +         D               S+  ++   +PD    
Sbjct: 29  SGTQACKALRQVGYEIVLVNSNPATIMTDPGMADATYIEPLNVESLTRIIEKERPDALLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G  G +       Q +L+   +        A     D+   K  ++  G+ +  + +
Sbjct: 89  NLGGQSGLNLSSELAQQGVLKKYGVKIIGVQESAIKRGEDRDEFKATMNKLGIEMPKNTV 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           V        +   +  P V++P       G  ++   + + +   +  S +   Q+LIE+
Sbjct: 149 VTTVEDAQKAAAELGFPVVVRPAYTMGGTGGGMVFNREELDVIASRGLSASRVGQVLIEE 208

Query: 171 YVDG-IELTCGVMGD-ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEV 227
            V G  EL   V+ D  +  +T   +   D           +S    P   I  ++   +
Sbjct: 209 SVLGWEELELEVVRDAKNQRITVCFIENVDAMGVHT----GDSYCTAPMLTISQELQDRL 264

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           Q+ ++   +AI   G +   F  DP + +V  +EIN 
Sbjct: 265 QKYSYDIVEAIEVIGGTNVQFAHDPETGRVVVIEINP 301



 Score = 61.7 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/200 (13%), Positives = 74/200 (37%), Gaps = 8/200 (4%)

Query: 68  VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLIS 125
           +   L    +P   +   +  L+ D+ R   +++   +P+  + + +     +     I 
Sbjct: 642 IAGELAKAGVPILGTQPESIDLAEDRDRFASMMAELNIPMPEAGMASNLDDALQVAAKIG 701

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGD 184
            P +++P       G+ V+  ++ +   + ++        +LI++++   IE     + D
Sbjct: 702 YPLMVRPSYVLGGRGMEVVHDEEMLKHYVGKAVGVTPERPILIDKFLPHAIEAEADALSD 761

Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244
                    +   +       +S  ++  + P  IP    + ++       +A+   G+ 
Sbjct: 762 GVDVFVPAVMEHIELAGI---HSGDSACVIPPISIPAKHLETIKEYTKKIAKALNVVGL- 817

Query: 245 RSDFLFDPLSRKVFWLEINV 264
             +  +     +V+ LE N 
Sbjct: 818 -MNIQYAICEDRVYVLEANP 836


>gi|167031619|ref|YP_001666850.1| acetyl-CoA carboxylase biotin carboxylase subunit [Pseudomonas
           putida GB-1]
 gi|166858107|gb|ABY96514.1| acetyl-CoA carboxylase, biotin carboxylase [Pseudomonas putida
           GB-1]
          Length = 451

 Score = 71.3 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 77/222 (34%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         L  DK+ +K  +   GVP  P    
Sbjct: 80  AIHPGYGFLAENADFAEQVEKSGFAFIGPKADTIRLMGDKVSAKDAMIKSGVPTVPGSDG 139

Query: 112 LVNRFTMDS---QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGD 164
            +      +      +  P +IK   GG   G+ V+ K++ +         ++ +     
Sbjct: 140 PLPEDEEVALAIARDVGYPVIIKAAGGGGGRGMRVVHKEEDLISSAKLTRTEAGAAFGNP 199

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+++     +   V+ D   +               L+          PA  I   
Sbjct: 200 MVYLEKFLTNPRHVEVQVLSDGQGNAI-----HLGDRDCSLQRRHQKVLEEAPAPGIDEK 254

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +EV +    A   IG RG    +FL+   + + +++E+N 
Sbjct: 255 ARQEVFKRCVDACIEIGYRGAGTFEFLY--ENGRFYFIEMNT 294


>gi|26987296|ref|NP_742721.1| acetyl-CoA carboxylase biotin carboxylase subunit [Pseudomonas
           putida KT2440]
 gi|148545847|ref|YP_001265949.1| acetyl-CoA carboxylase biotin carboxylase subunit [Pseudomonas
           putida F1]
 gi|24981942|gb|AAN66185.1|AE016246_2 acetyl-CoA carboxylase, biotin carboxylase [Pseudomonas putida
           KT2440]
 gi|148509905|gb|ABQ76765.1| biotin carboxylase / acetyl-coenzyme A carboxylase carboxyl
           transferase subunit alpha [Pseudomonas putida F1]
 gi|313496932|gb|ADR58298.1| AccC_2 [Pseudomonas putida BIRD-1]
          Length = 451

 Score = 71.3 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 77/222 (34%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         L  DK+ +K  +   GVP  P    
Sbjct: 80  AIHPGYGFLAENADFAEQVEKSGFAFIGPKADTIRLMGDKVSAKDAMIKSGVPTVPGSDG 139

Query: 112 LVNRFTMDS---QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGD 164
            +      +      +  P +IK   GG   G+ V+ K++ +         ++ +     
Sbjct: 140 PLPEDEEVALAIARDVGYPVIIKAAGGGGGRGMRVVHKEEDLISSAKLTRTEAGAAFGNP 199

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+++     +   V+ D   +               L+          PA  I   
Sbjct: 200 MVYLEKFLTNPRHVEVQVLSDGQGNAI-----HLGDRDCSLQRRHQKVLEEAPAPGIDEK 254

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +EV +    A   IG RG    +FL+   + + +++E+N 
Sbjct: 255 ARQEVFKRCVDACIEIGYRGAGTFEFLY--ENGRFYFIEMNT 294


>gi|296101206|ref|YP_003611352.1| carbamoyl-phosphate synthase, large subunit [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
 gi|295055665|gb|ADF60403.1| carbamoyl-phosphate synthase, large subunit [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
          Length = 1074

 Score = 71.3 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 97/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D +              V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +    Q +LE   +    +   A   + D+ R    +   G+    S +
Sbjct: 89  TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLDTARSGI 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     +     +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHNMEEALAVAAEVGYPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTKELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + +   +   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIEN----FDAMGIHTGDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RNASMAVLREIGVETGGSNVQFSVNPKTGRLIVIEMNP 302



 Score = 62.4 bits (151), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 33/221 (14%), Positives = 83/221 (37%), Gaps = 14/221 (6%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           LE   +P   +   A   + D+ R +Q V    +    +  V      ++    I  P V
Sbjct: 654 LEAAGVPVIGTSPDAIDRAEDRERFQQAVDRLKLKQPANATVTAIEQAVEKAKEIGYPLV 713

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  +  +      + S ++   +L+++++ D +E+    + D  + 
Sbjct: 714 VRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDRFLDDAVEVDVDAICDGEMV 773

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           +    +   +    +    S +S   LPA  +  +I   +++        +  RG+    
Sbjct: 774 LIGGIMEHIE----QAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRGLMNVQ 829

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           F       +V+ +E+N +   T     P ++   G    ++
Sbjct: 830 FAV--KDNEVYLIEVNPRAART----VPFVSKATGIPLAKV 864


>gi|251811018|ref|ZP_04825491.1| acetyl-CoA carboxylase [Staphylococcus epidermidis BCM-HMP0060]
 gi|251805528|gb|EES58185.1| acetyl-CoA carboxylase [Staphylococcus epidermidis BCM-HMP0060]
          Length = 453

 Score = 71.3 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 82/220 (37%), Gaps = 18/220 (8%)

Query: 56  NVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
           NV+H  +G   E       +E   I +         +  DK+ ++Q V   GVPV P   
Sbjct: 76  NVIHPGYGFLSESTNFAKAVEDNHIHFIGPSKTTMEMMGDKITARQTVKQAGVPVIPGSN 135

Query: 113 VNRFTMDSQHLI----SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS----WNHGD 164
               ++D   L+      P V+K   GG   GI ++K+   +   L ++ S    + + +
Sbjct: 136 DAVQSVDEIKLLSKEIGFPVVLKAASGGGGKGIRIVKEASHLDQALKEAKSEGQKYFNDE 195

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           ++ +E ++     +   ++GD   +   +            + +         A +  + 
Sbjct: 196 RVYVEAFIPVAKHVEVQIIGDGKNNYVHLGERDCSV----QRKNQKLIEEAPCAALTEER 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
              +   A    QA   R     +FL    +   +++E+N
Sbjct: 252 RTRICGDAVKVAQASRYRSAGTIEFLVTEDAH--YFIEMN 289


>gi|239906311|ref|YP_002953052.1| phosphoribosylamine--glycine ligase [Desulfovibrio magneticus RS-1]
 gi|239796177|dbj|BAH75166.1| phosphoribosylamine--glycine ligase [Desulfovibrio magneticus RS-1]
          Length = 428

 Score = 71.3 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 49/252 (19%), Positives = 90/252 (35%), Gaps = 26/252 (10%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--QHLISPPYV 129
           LE   +P       A+ L   K  +K V+++ GVP                   +  P V
Sbjct: 82  LETASVPCFGPDAYAAQLEGSKAFAKDVMTAAGVPTAAYASFTDAAKARAYAQDLGRPVV 141

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQS---SSW-NHGDQLLIEQYVDGIELT--CGVMG 183
           +K     +  G+ V  +       + ++    ++   G  +++E+ + G E +      G
Sbjct: 142 VKADGLAAGKGVTVCTQTAQALAAIDEAMVDKAFGAAGGTVVVEEMLVGEEASFLAFCDG 201

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF------LAHQA 237
           + ++ +T     K+ F   +   +     +     +P   Y E+  L        +A + 
Sbjct: 202 ETAVPMTACQDHKAVFDGDQGPNTGGMGAYCPAPVLPPARYAEMMDLVIHPILKEMAKRG 261

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPG--------MTPVSIFP--EMAAYAGYSFRE 287
               GI  +  +      KV  LE NV+ G        M   S  P   +A  AG    E
Sbjct: 262 HPFTGILYAGLMMTEAGPKV--LEYNVRFGDPECQPLLMRLASDLPAIMLACRAGKLSPE 319

Query: 288 LLLWMVEDASCL 299
           L+ W  + A C+
Sbjct: 320 LVRWSDKSALCV 331


>gi|255099408|ref|ZP_05328385.1| putative carbamoyl-phosphate synthase large chain [Clostridium
           difficile QCD-63q42]
          Length = 410

 Score = 71.3 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 37/206 (17%), Positives = 66/206 (32%), Gaps = 36/206 (17%)

Query: 34  SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYT------------H 81
             IDVD      + ++  D            DG++    + L  PY              
Sbjct: 44  EAIDVDVFDFDKIKNIAIDKKI---------DGILTGFTDSLMKPYVYIANELNLPCVIS 94

Query: 82  SGILASALSMDKMRSKQVVSSCGVPVCPSILVNR-FTMDSQHLISPPYVIKPLKGGSSLG 140
              L S    +K   K    + G+P     ++     ++    ++ P VIKP+ G  S G
Sbjct: 95  CNQLESV--TNKAVMKNYFKNNGIPTTDYCIIESLKDLEKIQGLNFPLVIKPVDGYGSRG 152

Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL-----------TCGVMGDASLDV 189
           +  +   + +      S   +   Q++IE++ +  E+               +GD  L  
Sbjct: 153 VYFVSNIEELIEKFEYSKEASQDGQVIIEEFYESEEIQGLAWVHNGESHVFYIGDRELVN 212

Query: 190 TEIA-VPKSDFYSYELKYSSLNSTHV 214
                  K D   Y  KY       +
Sbjct: 213 IHTGRAGKPDRLIYPSKYCFQYEEEI 238


>gi|224477523|ref|YP_002635129.1| putative acetyl-CoA carboxylase (biotin carboxylase subunit), accC
           [Staphylococcus carnosus subsp. carnosus TM300]
 gi|222422130|emb|CAL28944.1| putative acetyl-CoA carboxylase (biotin carboxylase subunit), accC
           [Staphylococcus carnosus subsp. carnosus TM300]
          Length = 452

 Score = 71.3 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 80/220 (36%), Gaps = 18/220 (8%)

Query: 56  NVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
           N +H  +G   E       +E  +I +         +  DK+ ++Q V + GVP+ P   
Sbjct: 75  NAIHPGYGFLSESPTFAQKVEENDIYFIGPTRRTMEMMGDKITARQTVDNAGVPIIPGST 134

Query: 111 --ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS----SSWNHGD 164
             +       +    I  P V+K   GG   GI ++K+ + +     ++      + + D
Sbjct: 135 GAVNSVEEIKEIAKEIGYPVVLKAASGGGGKGIRIVKEPEDLAKSFKEAQSEGKKYFNDD 194

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           ++ +E ++     +   V+GD   +   +            + +         A +  + 
Sbjct: 195 RIYVEAFIPVAKHVEVQVIGDGKENYVHLGERDCSV----QRKNQKLIEESPCAALTDER 250

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            + +   A    +A   R     +FL        +++E+N
Sbjct: 251 RRAICEDAVKVARASNYRSAGTIEFLVTE--DAYYFIEMN 288


>gi|161869354|ref|YP_001598521.1| acetyl-CoA carboxylase biotin carboxylase component [Neisseria
           meningitidis 053442]
 gi|161594907|gb|ABX72567.1| acetyl-CoA carboxylase biotin carboxylase component [Neisseria
           meningitidis 053442]
          Length = 430

 Score = 71.3 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 80/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---S 110
            +H  +G   E+      +E     +         L  DK+ +K  + + GVP  P    
Sbjct: 54  AVHPGYGFLAENADFAEQVEQSGFTFIGPKPDTIRLMGDKVSAKHAMIAAGVPCVPGSDG 113

Query: 111 ILVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
            L +     +     +  P +IK   GG   G+ V++K + +   +     ++ +     
Sbjct: 114 ALPDDGEEILKIADKVGYPVIIKASGGGGGRGMRVVEKKEDLLQSVEMTKAEAGAAFGNP 173

Query: 165 QLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+Y+     +   V+ D   +   +A          L+          PA  I   
Sbjct: 174 MVYMERYLQRPRHVEIQVIADEHGNAIYLAE-----RDCSLQRRHQKVIEEAPAPFITEK 228

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              ++      A + IG RG    +FL+     + F++E+N 
Sbjct: 229 ERAKIGNACADACKRIGYRGAGTFEFLY--EDGEFFFIEMNT 268


>gi|90581286|ref|ZP_01237083.1| acetyl-CoA carboxylase [Vibrio angustum S14]
 gi|90437525|gb|EAS62719.1| acetyl-CoA carboxylase [Vibrio angustum S14]
          Length = 447

 Score = 71.3 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 78/222 (35%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      +E     +         L  DK+ +   +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAEQVERSGFIFVGPKADTIRLMGDKVSAITAMKKAGVPCVPGSDG 136

Query: 114 NRFTMDSQHL-----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GD 164
                ++++      I  P +IK   GG   G+ V++ ++ +   +  + +        D
Sbjct: 137 PLDDDEAKNKSFAKRIGYPVIIKASGGGGGRGMRVVRSEEELTEAIAMTRAEAKSCFNND 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+Y++    +   V+ D       +            K          PA  I  +
Sbjct: 197 MVYMEKYLENPRHIEVQVLADGQGGAIHLGERDCSMQRRHQK-----VVEEAPAPGITEE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + K +      A   I  RG    +FL+   + + +++E+N 
Sbjct: 252 MRKYIGERCTRACLEINYRGAGTFEFLY--ENGEFYFIEMNT 291


>gi|187733854|ref|YP_001878857.1| carbamoyl phosphate synthase large subunit [Shigella boydii CDC
           3083-94]
 gi|187430846|gb|ACD10120.1| carbamoyl-phosphate synthase, large subunit [Shigella boydii CDC
           3083-94]
          Length = 1073

 Score = 71.3 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 97/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D +              V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +    Q +LE   +    +   A   + D+ R    +   G+    S +
Sbjct: 89  TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGI 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     +     +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHTMEEALAVAADVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + +   +   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIEN----FDAMGIHTGDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RNASMAVLREIGVETGGSNVQFAVNPKNGRLIVIEMNP 302



 Score = 60.5 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 30/197 (15%), Positives = 74/197 (37%), Gaps = 10/197 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYV 129
           LE   +P   +   A   + D+ R +  V    +    +  V    M  +    I  P V
Sbjct: 654 LEAAGVPVIGTSPDAIDRAEDRERFQHAVERLKLKQPANATVTAIEMAVEKAKEIGYPLV 713

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  +  +      + S ++   +L++ ++ D +E+    + D  + 
Sbjct: 714 VRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDDAVEVDVDAICDGEMV 773

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           +    +   +    +    S +S   LPA  +  +I   +++        +  RG+    
Sbjct: 774 LIGGIMEHIE----QAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRGLMNVQ 829

Query: 248 FLFDPLSRKVFWLEINV 264
           F     + +V+ +E+N 
Sbjct: 830 FAV--KNNEVYLIEVNP 844


>gi|282875970|ref|ZP_06284837.1| biotin carboxylase [Staphylococcus epidermidis SK135]
 gi|281294995|gb|EFA87522.1| biotin carboxylase [Staphylococcus epidermidis SK135]
          Length = 453

 Score = 71.3 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 82/220 (37%), Gaps = 18/220 (8%)

Query: 56  NVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
           NV+H  +G   E       +E   I +         +  DK+ ++Q V   GVPV P   
Sbjct: 76  NVIHPGYGFLSESTNFAKAVEDNHIHFIGPSKTTMEMMGDKITARQTVKQAGVPVIPGSN 135

Query: 113 VNRFTMDSQHLI----SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS----WNHGD 164
               ++D   L+      P V+K   GG   GI ++K+   +   L ++ S    + + +
Sbjct: 136 DAVQSVDEIKLLSKEIGFPVVLKAASGGGGKGIRIVKEASHLDQALKEAKSEGQKYFNDE 195

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           ++ +E ++     +   ++GD   +   +            + +         A +  + 
Sbjct: 196 RVYVEAFIPVAKHVEVQIIGDGKNNYVHLGERDCSV----QRKNQKLIEEAPCAALTEER 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
              +   A    QA   R     +FL    +   +++E+N
Sbjct: 252 RTRICGDAVKVAQASRYRSAGTIEFLVTEDAH--YFIEMN 289


>gi|261393201|emb|CAX50820.1| biotin carboxylase (A subunit of acetyl-CoA carboxylase; ACC)
           [Neisseria meningitidis 8013]
          Length = 453

 Score = 71.3 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 80/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---S 110
            +H  +G   E+      +E     +         L  DK+ +K  + + GVP  P    
Sbjct: 77  AVHPGYGFLAENADFAEQVEQSGFTFIGPKPDTIRLMGDKVSAKHAMIAAGVPCVPGSDG 136

Query: 111 ILVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
            L +     +     +  P +IK   GG   G+ V++K + +   +     ++ +     
Sbjct: 137 ALPDDGEEILKIADKVGYPVIIKASGGGGGRGMRVVEKKEDLLQSVEMTKAEAGAAFGNP 196

Query: 165 QLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+Y+     +   V+ D   +   +A          L+          PA  I   
Sbjct: 197 MVYMERYLQRPRHVEIQVIADEHGNAIYLAE-----RDCSLQRRHQKVIEEAPAPFITEK 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              ++      A + IG RG    +FL+     + F++E+N 
Sbjct: 252 ERAKIGNACADACKRIGYRGAGTFEFLY--EDGEFFFIEMNT 291


>gi|218531171|ref|YP_002421987.1| carbamoyl-phosphate synthase L chain ATP-binding [Methylobacterium
           chloromethanicum CM4]
 gi|218523474|gb|ACK84059.1| Carbamoyl-phosphate synthase L chain ATP-binding [Methylobacterium
           chloromethanicum CM4]
          Length = 667

 Score = 71.3 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 75/220 (34%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H  +G   E       L    I +      A A   DK+ SK+  ++  V   P  L 
Sbjct: 77  AVHPGYGFLSERESFPKALAEAGIVFIGPNPGAIAAMGDKIESKKAAAAAEVSTVPGFLG 136

Query: 113 ---VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
                   +   + I  P +IK   GG   G+ + +    +     ++ S        D+
Sbjct: 137 VIESPEHAVTIANEIGYPVMIKASAGGGGKGMRIAESADEVAEGFARAKSEASSSFGDDR 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+++ D   +   V+GD   +V  +   +        K             +  +  
Sbjct: 197 VFVEKFITDPRHIEIQVIGDKHGNVIYLGERECSIQRRNQK----VIEEAPSPLLDEETR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +++   A    +A+        +F      +  ++LE+N 
Sbjct: 253 RKMGEQAVALAKAVNYDSAGTVEF-VAGQDKSFYFLEMNT 291


>gi|171463552|ref|YP_001797665.1| carbamoyl-phosphate synthase, large subunit [Polynucleobacter
           necessarius subsp. necessarius STIR1]
 gi|171193090|gb|ACB44051.1| carbamoyl-phosphate synthase, large subunit [Polynucleobacter
           necessarius subsp. necessarius STIR1]
          Length = 1087

 Score = 71.3 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 28/198 (14%), Positives = 74/198 (37%), Gaps = 8/198 (4%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           LE   +P   +       + D+ R ++++   G+   P+         +     I  P V
Sbjct: 658 LEHNGVPIIGTPPDMIDAAEDRERFQKLLKDLGLRQPPNRTARTEEEALKLAEEIGYPLV 717

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++   + +   + ++   +H   +L+++++ D IE     + D    
Sbjct: 718 VRPSYVLGGRAMEIVHDGRDLERYMREAVKVSHDSPVLLDRFLNDAIECDVDCISDGEKV 777

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                +   +       +S  ++  + P  +     +E++RL     + +   G+    F
Sbjct: 778 FIGGVMEHIEQAGV---HSGDSACSLPPYSLSDATVEEIKRLTAAMAKGLNVVGLMNVQF 834

Query: 249 LFDPLSRK--VFWLEINV 264
               +  K  ++ LE+N 
Sbjct: 835 AIQNVDGKDIIYVLEVNP 852



 Score = 64.4 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 53/288 (18%), Positives = 101/288 (35%), Gaps = 48/288 (16%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL D G+KV  +              DV          V  ++A  KPD+   
Sbjct: 29  SGAQACKALRDEGYKVILVNSNPATIMTDPEMADVTYIEPITWEVVERIIATEKPDVILP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      +LE        +   A   + D+ + K+ ++  G+    S +
Sbjct: 89  TMGGQTALNCALDLHRHGVLEKYGCKLIGASPEAIDKAEDRQKFKEAMTKIGLGSAKSGI 148

Query: 113 VNRFTMDSQHLI-----------SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN 161
               +MD  H +             P VI+P       G  +    +       +    +
Sbjct: 149 A--HSMDEAHEVQQRIQHETGSSGFPVVIRPSFTMGGSGGGIAYNREEFEEICKRGLDLS 206

Query: 162 HGDQLLIEQYVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK- 218
              +LLIE+ + G  E    V+ D + + +   ++   D           +S  V PA+ 
Sbjct: 207 PTRELLIEESLLGWKEFEMEVVRDRNDNCIIVCSIENLDPMGVHT----GDSITVAPAQT 262

Query: 219 IPLDIYKEVQRLAFLAHQAIGC--RGISRSDFLFDPLSRKVFWLEINV 264
           +    Y+ ++  +    + I C   G S   F  +P+  ++  +E+N 
Sbjct: 263 LTDKEYQIMRNASIAVLREI-CVDTGGSNVQFSINPVDGRMIVIEMNP 309


>gi|307824219|ref|ZP_07654445.1| acetyl-CoA carboxylase, biotin carboxylase [Methylobacter
           tundripaludum SV96]
 gi|307734599|gb|EFO05450.1| acetyl-CoA carboxylase, biotin carboxylase [Methylobacter
           tundripaludum SV96]
          Length = 447

 Score = 71.3 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 47/291 (16%), Positives = 95/291 (32%), Gaps = 50/291 (17%)

Query: 13  EVSLSSGKACASALEDAGFKVSQI--DVDRSVGLVLAHLK---------PDLAFN----- 56
           E++L        A  + G KV  +  + DR +  V    +          D   N     
Sbjct: 12  EIALR----ILRACRELGVKVVAVHSEADRDLKHVRLADESVCIGPASSADSYLNIPAII 67

Query: 57  ---------VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCG 104
                     +H  +G   E+      ++     +         +  DK+ +K+ +   G
Sbjct: 68  SAAEVTDAEAIHPGYGFLSENADFSEKVKQSGFVFIGPNAETIRMMGDKISAKKAMLEAG 127

Query: 105 VPVCPSILV-----NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
           +P  P         N+  +   H I  P +IK   GG   G+  +  + ++   +  + +
Sbjct: 128 IPCVPGNNDPLSDDNKKNLKLAHEIGYPVIIKAAGGGGGRGMRTVHTEAALLNAIAMTKA 187

Query: 160 WN----HGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHV 214
                     + +E+++ D   +   VM D+  +   +            K         
Sbjct: 188 EAGTAFGNPTVYMEKFLEDPRHIEFQVMADSHGNAIHLGERDCSMQRRHQK-----VVEE 242

Query: 215 LPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            PA  I     K +      A   IG  G    +FL++    + +++E+N 
Sbjct: 243 APAPGITEAQRKAIGERCAKACVDIGYLGAGTFEFLYEK--GEFYFIEMNT 291


>gi|258575591|ref|XP_002541977.1| carbamoyl-phosphate synthase, large subunit [Uncinocarpus reesii
           1704]
 gi|237902243|gb|EEP76644.1| carbamoyl-phosphate synthase, large subunit [Uncinocarpus reesii
           1704]
          Length = 1174

 Score = 71.3 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 59/291 (20%), Positives = 106/291 (36%), Gaps = 41/291 (14%)

Query: 6   GGIS----SEREVSLSSGKACASALEDAGF--------------------KVSQIDVDRS 41
           GG+S     E + S   G     AL++AG                     +V  + V   
Sbjct: 105 GGLSIGQAGEFDYS---GSQALKALKEAGVKSVLINPNIATIQTDHKLADEVYYLPVTPE 161

Query: 42  -VGLVLAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRS 96
            V  V+   KPD  F    G    +  VQ     I E   +    + +     S D+   
Sbjct: 162 YVTHVIEKEKPDGIFLSFGGQTALNLGVQMNRLGIFEKYGVKVLGTSVRTLETSEDRDLF 221

Query: 97  KQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154
            + ++   +P+  SI V+     +D+   I  P +++       LG       + +    
Sbjct: 222 AKALNEINIPIAESIAVSTVDEALDAADKIGYPIIVRSAYALGGLGSGFANNAEELK--N 279

Query: 155 LQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTH 213
           L S S     Q+L+E+ + G  E+   V+ DAS +   I V   + +   L   + +S  
Sbjct: 280 LSSRSLTLAPQILVEKSLKGWKEVEYEVVRDASNN--CITVCNMENFD-PLGIHTGDSIV 336

Query: 214 VLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
           V P++ +  + Y  ++  A    + +G  G     +   P       +E+N
Sbjct: 337 VAPSQTLSDEEYHMLRTAAIKIVRHLGVVGECNVQYALQPDGLDYRVIEVN 387



 Score = 53.2 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 25/176 (14%), Positives = 57/176 (32%), Gaps = 12/176 (6%)

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVI 130
           E        +       + D+ +  Q + S GV       +            +  P ++
Sbjct: 735 ETGGAHVLGTDPKDIDRAEDRHKFSQTLDSIGVDQPAWKELTSVAEAEAFAESVGYPVLV 794

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL----TCGVMGDAS 186
           +P    S   + VI+    +   L+ +S  +    ++I ++++G +          G   
Sbjct: 795 RPSYVLSGAAMSVIRSQDELHDKLISASDVSPDHPVVITKFIEGAQEIDVDAVASGGKLL 854

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
           L      V  +  +S +       +  + P  +   I   V+ +A    +A    G
Sbjct: 855 LHAVSEHVEAAGVHSGDA------TLVLPPVNLDESIMSRVKEIAEKVAKAFSITG 904


>gi|154707556|ref|YP_001424722.1| carbamoyl-phosphate synthase large chain [Coxiella burnetii Dugway
           5J108-111]
 gi|154356842|gb|ABS78304.1| carbamoyl-phosphate synthase large chain [Coxiella burnetii Dugway
           5J108-111]
          Length = 1073

 Score = 71.3 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 46/278 (16%), Positives = 96/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D D              +  ++   KPD    
Sbjct: 29  SGTQACRALREEGYRVILVNSNPATIMTDPDLADATYIEPVHWEVIAKIIEKEKPDALLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G  G +  +    + ILE   +    +   A   + D+   ++ +   G+    S L
Sbjct: 89  TMGGQTGLNCALDLVREGILEKYGVELIGASREAIDKAEDRSLFQKAMLKIGLQTPRSGL 148

Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +      +    +  P +I+P       G  +            +    +   ++LI++
Sbjct: 149 AHSMEDAWKILEQVGFPAIIRPSFTLGGSGGGIAYNRDEFLAICTRGLELSPTTEILIDE 208

Query: 171 YVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + + +   ++   D           +S  V PA+ +    Y+ +
Sbjct: 209 SIAGWKEFELEVVRDKNDNCIIVCSIENFDPMGIHT----GDSITVAPAQTLTDKEYQRM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  A    + IG   G S   F  +P   ++  +E+N 
Sbjct: 265 RDAAIAILREIGVETGGSNVQFGINPDDGRMIVIEMNP 302



 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 39/232 (16%), Positives = 85/232 (36%), Gaps = 26/232 (11%)

Query: 67  LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQHLI 124
            + + L    +P   +   A   + D+ R + ++   G+   P+  V      +    + 
Sbjct: 654 KLASALAKAGVPIVGTTPDAIDRAEDRERFQALIQGVGLRQPPNGTVRSVEEGLRLAKVF 713

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL--------IEQYVDGIE 176
           + P +++P        + VI  ++ +   + +    + G+ LL        IE  VD I 
Sbjct: 714 AYPLIVRPSYVLGGRAMKVIYSEKELTRYMTKDVIVSEGEPLLLDRFLDDAIEVDVDAIC 773

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
               V+    L+  E A   S            +S    P  +  +I ++++    L  +
Sbjct: 774 DGENVLIGGILEHIEQAGVHSG----------DSSCAFPPHSLSPEIQEQLREQVRLIAK 823

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
            +G  G+  + F       +++ LE+N +   T     P +A   G    ++
Sbjct: 824 ELGVVGLINTQFAI--QENEIYVLEVNPRASRT----VPFLAKATGMPLAKI 869


>gi|295098559|emb|CBK87649.1| carbamoyl-phosphate synthase large subunit [Enterobacter cloacae
           subsp. cloacae NCTC 9394]
          Length = 1074

 Score = 71.3 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 97/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D +              V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +    Q +LE   +    +   A   + D+ R    +   G+    S +
Sbjct: 89  TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLDTARSGI 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     +     +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHNMEEALAVAAEVGYPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTKELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + +   +   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIEN----FDAMGIHTGDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RNASMAVLREIGVETGGSNVQFSVNPKTGRLIVIEMNP 302



 Score = 61.3 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 81/220 (36%), Gaps = 12/220 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYV 129
           LE   +P   +   A   + D+ R +Q V    +    +  V    M  +    I  P V
Sbjct: 654 LEAAGVPVIGTSPDAIDRAEDRERFQQAVDRLKLKQPANATVTAIEMAVEKAKEIGYPLV 713

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           ++P        + ++  +  +      + S ++   +L+++++D       V  DA  D 
Sbjct: 714 VRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDRFLD---DAVEVDVDAVCDG 770

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
             + +     +  +    S +S   LPA  +  +I   +++        +  RG+    F
Sbjct: 771 ERVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRGLMNVQF 830

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
                  +V+ +E+N +   T     P ++   G    ++
Sbjct: 831 AV--KDNEVYLIEVNPRAART----VPFVSKATGIPLAKV 864


>gi|254804315|ref|YP_003082536.1| Biotin carboxylase [Neisseria meningitidis alpha14]
 gi|304388399|ref|ZP_07370508.1| acetyl-CoA carboxylase subunit A [Neisseria meningitidis ATCC
           13091]
 gi|254667857|emb|CBA03904.1| Biotin carboxylase [Neisseria meningitidis alpha14]
 gi|304337611|gb|EFM03771.1| acetyl-CoA carboxylase subunit A [Neisseria meningitidis ATCC
           13091]
 gi|325204817|gb|ADZ00271.1| acetyl-CoA carboxylase, biotin carboxylase [Neisseria meningitidis
           M01-240355]
 gi|325207479|gb|ADZ02931.1| acetyl-CoA carboxylase, biotin carboxylase [Neisseria meningitidis
           NZ-05/33]
          Length = 453

 Score = 71.3 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 80/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---S 110
            +H  +G   E+      +E     +         L  DK+ +K  + + GVP  P    
Sbjct: 77  AVHPGYGFLAENADFAEQVEQSGFTFIGPKPDTIRLMGDKVSAKHAMIAAGVPCVPGSDG 136

Query: 111 ILVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
            L +     +     +  P +IK   GG   G+ V++K + +   +     ++ +     
Sbjct: 137 ALPDDGEEILKIADKVGYPVIIKASGGGGGRGMRVVEKKEDLLQSVEMTKAEAGAAFGNP 196

Query: 165 QLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+Y+     +   V+ D   +   +A          L+          PA  I   
Sbjct: 197 MVYMERYLQRPRHVEIQVIADEHGNAIYLAE-----RDCSLQRRHQKVIEEAPAPFITEK 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              ++      A + IG RG    +FL+     + F++E+N 
Sbjct: 252 ERAKIGNACADACKRIGYRGAGTFEFLY--EDGEFFFIEMNT 291


>gi|313125885|ref|YP_004036155.1| acetyl/propionyl-CoA carboxylase, alpha subunit [Halogeometricum
           borinquense DSM 11551]
 gi|312292250|gb|ADQ66710.1| acetyl/propionyl-CoA carboxylase, alpha subunit [Halogeometricum
           borinquense DSM 11551]
          Length = 597

 Score = 71.3 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 34/236 (14%), Positives = 75/236 (31%), Gaps = 18/236 (7%)

Query: 39  DRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQ 98
             +V         D      +G   E+    A +E  E+ +      A     +K +++ 
Sbjct: 63  HEAVIEAGEKAGADAVHPG-YGFLAENAEFAAKVEESEMTWVGPSAAAMERLGEKTKARA 121

Query: 99  VVSSCGVPVCPSILVN----RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154
           ++    VPV P             +       P  IK   GG   G+ V+  +  +   L
Sbjct: 122 LMQKADVPVVPGTTEPVESAEEVKEIADEYGYPVAIKAEGGGGGRGLKVVHNEDEVEDQL 181

Query: 155 LQS----SSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209
             +     ++     + +E+Y++    +   ++ D   +     V         L+    
Sbjct: 182 ETAQREGEAYFDNASVYVEKYLEAPRHIEVQILADKHGN-----VRHLGERDCSLQRRHQ 236

Query: 210 NSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
                 P+  +  D+ + +   A     A         +FL      + +++E+N 
Sbjct: 237 KVIEEAPSPALDDDLRERIGEAARRGVDAADYTNAGTVEFLV--EDGEFYFMEVNT 290


>gi|224535699|ref|ZP_03676238.1| hypothetical protein BACCELL_00563 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224522679|gb|EEF91784.1| hypothetical protein BACCELL_00563 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 503

 Score = 71.3 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 41/223 (18%), Positives = 84/223 (37%), Gaps = 23/223 (10%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       +   I +            DK+ +++ + + GVPV P    
Sbjct: 77  AIHPGYGFLSENADFARRCKEEGIIFIGPSAETMEAMGDKISARKHMIAAGVPVVPGTEQ 136

Query: 114 NRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
              +        + I  P ++K   GG   G+ +I  +  +      + S +      D 
Sbjct: 137 PLQSAGEAVMICNKIGYPVMLKASMGGGGKGMRLIHSEDEVVEAYNTARSESMSAFGDDT 196

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK---IPL 221
           + +E++V+    +   V+GD   +V  +       +  E      N   V  +    +  
Sbjct: 197 VYLEKFVEEPHHIEFQVLGDNHGNVIHL-------FDRECSVQRRNQKIVEESPSPFLTP 249

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           ++ +E+   A  A +A+   G    +FL D   R  ++LE+N 
Sbjct: 250 ELRREMGEKAVAAAKAVNYSGAGTIEFLVDKH-RHFYFLEMNT 291


>gi|209515154|ref|ZP_03264022.1| Carbamoyl-phosphate synthase L chain ATP-binding [Burkholderia sp.
           H160]
 gi|209504408|gb|EEA04396.1| Carbamoyl-phosphate synthase L chain ATP-binding [Burkholderia sp.
           H160]
          Length = 689

 Score = 71.3 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 82/221 (37%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       E   I +    + A A    K  +K ++ +  VP+ P    
Sbjct: 77  AVHPGYGFLSENEDFAHACEAAGIVFIGPPVEAIAAMGSKAAAKALMHAAAVPLVPGYHG 136

Query: 114 NRFT----MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
           +             I  P ++K   GG   G+ V+++       LL    +++S    D+
Sbjct: 137 DDQDPQLLQREADAIGYPVLLKASAGGGGKGMRVVERSADFAAALLSCKREAASSFGNDR 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           +LIE+Y+     +   V  D       +           ++          PA  +  ++
Sbjct: 197 VLIEKYLTRPRHVEVQVFADQHGGAVYL-----FDRDCSVQRRHQKVLEEAPAPGLSAEV 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +   A  A +A+   G    +F+  P + + +++E+N 
Sbjct: 252 KRAMGESAVAAARAVNYVGAGTVEFIMTP-TGEFYFMEMNT 291


>gi|218767558|ref|YP_002342070.1| putative acetyl-CoA carboxylase biotin carboxylase component
           [Neisseria meningitidis Z2491]
 gi|121051566|emb|CAM07864.1| putative acetyl-CoA carboxylase biotin carboxylase component
           [Neisseria meningitidis Z2491]
 gi|319409822|emb|CBY90130.1| biotin carboxylase (A subunit of acetyl-CoA carboxylase; ACC)
           [Neisseria meningitidis WUE 2594]
          Length = 453

 Score = 71.3 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 81/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---S 110
            +H  +G   E+      +E     +         L  DK+ +K  + + GVP  P    
Sbjct: 77  AVHPGYGFLAENADFAEQVEQSGFTFIGPKPDTIRLMGDKVSAKHAMIAAGVPCVPGSDG 136

Query: 111 ILVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
            L +     +     I  P +IK   GG   G+ V++K + +   +     ++ +     
Sbjct: 137 ALPDDGEEILKIADKIGYPVIIKASGGGGGRGMRVVEKKEDLLQSVEMTKAEAGAAFGNP 196

Query: 165 QLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+Y+     +   V+ D   +   +A          L+          PA  I   
Sbjct: 197 MVYMERYLQRPRHVEIQVIADEHGNAVYLAE-----RDCSLQRRHQKVIEEAPAPFITEK 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              ++ +    A + IG RG    +FL+     + F++E+N 
Sbjct: 252 ERAKIGKACADACKRIGYRGAGTFEFLY--EDGEFFFIEMNT 291


>gi|121727498|ref|ZP_01680616.1| carbamoyl-phosphate synthase, large subunit [Vibrio cholerae V52]
 gi|121630166|gb|EAX62568.1| carbamoyl-phosphate synthase, large subunit [Vibrio cholerae V52]
          Length = 1076

 Score = 71.3 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 34/197 (17%), Positives = 76/197 (38%), Gaps = 10/197 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH--LISPPYV 129
           LE   +P   +   A   + D+ R +Q V   G+    +  V       +    I  P V
Sbjct: 653 LEAAGVPVIGTSPDAIDRAEDRERFQQAVQRLGLKQPDNATVTAIEQAVEKSREIGFPLV 712

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  +Q +     ++ S ++   +L+++++ D  E+    + D    
Sbjct: 713 VRPSYVLGGRAMEIVYDEQDLRRYFNEAVSVSNESPVLLDRFLDDATEVDVDAICDGERV 772

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           V    +   +    +    S +S   LPA  +  +I  +++         +G RG+    
Sbjct: 773 VIGGIMEHIE----QAGVHSGDSACSLPAYTLSQEIQDKMREQVEKLAFELGVRGLMNIQ 828

Query: 248 FLFDPLSRKVFWLEINV 264
           F       +V+ +E+N 
Sbjct: 829 FAV--KDNEVYLIEVNP 843



 Score = 59.4 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 44/278 (15%), Positives = 95/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D +              V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAILP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV--PVCPS 110
            + G    +  +      +L    +    +   A   + D+ R  + + S G+  P   +
Sbjct: 89  TMGGQTALNCALALEKHGVLAEFGVEMIGATADAIDKAEDRSRFDKAMKSIGLECPRADT 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                       ++  P +I+P       G  +    +       +    +  ++LLI++
Sbjct: 149 AKSMEEAYKVLDMVGFPCIIRPSFTMGGSGGGIAYNREEFEEICTRGLDLSPTNELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + + +   A+   D           +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCAIENFDPMGIHT----GDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P   ++  +E+N 
Sbjct: 265 RNASLAVLREIGVETGGSNVQFGINPKDGRMVIIEMNP 302


>gi|325294322|ref|YP_004280836.1| carbamoyl-phosphate synthase, large subunit [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325064770|gb|ADY72777.1| carbamoyl-phosphate synthase, large subunit [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 1071

 Score = 71.3 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 57/289 (19%), Positives = 104/289 (35%), Gaps = 38/289 (13%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI---------DVD------------RSVGLV 45
           G ++E + S   G     AL++ G++V  +         D D              +  +
Sbjct: 21  GQAAEFDYS---GTQACKALKEEGYQVVLVNSNPATIMTDPDIADRTYIEPLTVEVLEKI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   +PD     + G    +  V+     ILE   +    + I A   + D+   K+ + 
Sbjct: 78  IEKERPDALLPTVGGQTALNLAVELYEAGILEKYGVELIGAKIEAIKKAEDRELFKEAML 137

Query: 102 SCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G+ V  S L       M+    +  P +I+P       G  V    +       +   
Sbjct: 138 KIGLEVPKSGLARSLDEAMEVVKEVGLPAIIRPAFTLGGEGGGVAYNIEEFKEIAKRGLD 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGD-ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
            +  +++LIE+ V G  E    VM D     V   ++   D           +S  V PA
Sbjct: 198 ASPINEILIEESVLGWKEYELEVMRDLNDNVVIICSIENIDPMGVHT----GDSITVAPA 253

Query: 218 K-IPLDIYKEVQRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           + +    Y+ ++  A    + IG   G S   F  +P + +V  +E+N 
Sbjct: 254 QTLTDKEYQVLRDAAIAIIREIGVETGGSNVQFAVNPENGRVIVIEMNP 302



 Score = 65.5 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 45/287 (15%), Positives = 104/287 (36%), Gaps = 33/287 (11%)

Query: 25  ALEDAGFKVSQ---------IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ------ 69
           AL + G++             D D S  L    L  + A N++     E  +VQ      
Sbjct: 584 ALRELGYEAHMANCNPETVSTDYDTSDKLFFEPLTLEDALNIVEKEKPEGVIVQFGGQTP 643

Query: 70  ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--FTMDSQHL 123
                 LE   +    +   +  ++ D+ R + +++  G+   PS +             
Sbjct: 644 LKLSVPLEKEGVKILGTSSESIDIAEDRERFRTLLNKLGLKQPPSGIARSLEEAEKIAEE 703

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVM 182
           I  P +++P        + ++     +   + ++   +    +LI++++ D +E     +
Sbjct: 704 IGFPVLMRPSYVLGGRAMRIVYDINELRTYMTEAVEVSEDRPVLIDKFLEDAVEFDVDAV 763

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCR 241
            D    V    +   +    E    S +S  VLP   +P +I +E++ +       +  +
Sbjct: 764 CDGKRVVIGGVMEHIE----EAGIHSGDSACVLPTFSVPKEIVEEIKEITRKIALELNVK 819

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           G+    F       +++ +E+N +   T     P ++   G    ++
Sbjct: 820 GLINIQFAV--KDGEIYIIEVNPRASRT----VPFVSKATGIPLAKV 860


>gi|256848119|ref|ZP_05553563.1| pyruvate carboxylase [Lactobacillus coleohominis 101-4-CHN]
 gi|256715179|gb|EEU30156.1| pyruvate carboxylase [Lactobacillus coleohominis 101-4-CHN]
          Length = 1146

 Score = 71.3 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 39/243 (16%), Positives = 85/243 (34%), Gaps = 25/243 (10%)

Query: 35  QIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSM 91
            +D+D  +  V      D     +H  +G   E+           I +    +    +  
Sbjct: 60  YLDMD-DIIRVAKQTGAD----AIHPGYGFLAENEEFAEKCAQNGITFIGPTVEQLKIFG 114

Query: 92  DKMRSKQVVSSCGVPVCPSILVN----RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147
           DK+ +K+V    G+   P I       +   D  H    P +IK   GG   G+ ++K D
Sbjct: 115 DKITAKEVAEKNGLQTIPGINEPVKSMQEMADFAHTHGYPIMIKAAMGGGGRGMRIVKDD 174

Query: 148 QSIPLDL----LQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSY 202
           + +         ++ +    D+L +E+Y++    +   ++ D    V             
Sbjct: 175 EDLKTAYNRARSEAKASFGDDELYVEKYLENPKHIEVQILADEHGHVM-----HLFERDC 229

Query: 203 ELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
            ++  +       P+  +     KE+   A    + +  +     +FL    +   +++E
Sbjct: 230 SVQRRNQKVIEFAPSLALDSQRRKEICDAAVRLMKGVHYQNAGTVEFLVTKDN--FYFIE 287

Query: 262 INV 264
           +N 
Sbjct: 288 VNP 290


>gi|15677696|ref|NP_274857.1| acetyl-CoA carboxylase, biotin carboxylase [Neisseria meningitidis
           MC58]
 gi|7227118|gb|AAF42195.1| acetyl-CoA carboxylase, biotin carboxylase [Neisseria meningitidis
           MC58]
 gi|316985470|gb|EFV64417.1| acetyl-CoA carboxylase, biotin carboxylase [Neisseria meningitidis
           H44/76]
 gi|325133506|gb|EGC56169.1| acetyl-CoA carboxylase, biotin carboxylase [Neisseria meningitidis
           M13399]
 gi|325139521|gb|EGC62061.1| acetyl-CoA carboxylase, biotin carboxylase [Neisseria meningitidis
           CU385]
 gi|325143756|gb|EGC66073.1| acetyl-CoA carboxylase, biotin carboxylase [Neisseria meningitidis
           M01-240013]
 gi|325200919|gb|ADY96374.1| acetyl-CoA carboxylase, biotin carboxylase [Neisseria meningitidis
           H44/76]
 gi|325206773|gb|ADZ02226.1| acetyl-CoA carboxylase, biotin carboxylase [Neisseria meningitidis
           M04-240196]
          Length = 453

 Score = 71.3 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 80/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---S 110
            +H  +G   E+      +E     +         L  DK+ +K  + + GVP  P    
Sbjct: 77  AVHPGYGFLAENADFAEQVEQSGFTFIGPKPDTIRLMGDKVSAKHAMIAAGVPCVPGSDG 136

Query: 111 ILVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
            L +     +     +  P +IK   GG   G+ V++K + +   +     ++ +     
Sbjct: 137 ALPDDGEEILKIADKVGYPVIIKASGGGGGRGMRVVEKKEDLLQSVEMTKAEAGAAFGNP 196

Query: 165 QLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+Y+     +   V+ D   +   +A          L+          PA  I   
Sbjct: 197 MVYMERYLQRPRHVEIQVIADEHGNAIYLAE-----RDCSLQRRHQKVIEEAPAPFITEK 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              ++      A + IG RG    +FL+     + F++E+N 
Sbjct: 252 ERAKIGNACADACKRIGYRGAGTFEFLY--EDGEFFFIEMNT 291


>gi|154686698|ref|YP_001421859.1| acetyl-CoA carboxylase biotin carboxylase subunit [Bacillus
           amyloliquefaciens FZB42]
 gi|154352549|gb|ABS74628.1| AccC [Bacillus amyloliquefaciens FZB42]
          Length = 450

 Score = 71.3 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 87/221 (39%), Gaps = 18/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     + E L + +      A +    K  ++  +   GVP+ P    
Sbjct: 77  AIHPGYGFLAENADFAELCEELNVTFVGPTADAISKMGTKDIARDTMQLAGVPIVPGSKG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-----SSSWNHGD 164
            I      +     I  P +IK   GG   GI V + ++ +   +       ++++    
Sbjct: 137 IIKNTEEAVSLAGEIGYPVIIKATAGGGGKGIRVARTEEELIKGIEITQQEAATAFG-NP 195

Query: 165 QLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            + IE+Y++    +   V+ D   +   +            K    + +   PA +  +I
Sbjct: 196 GVYIEKYIEDFRHVEIQVLADNYGNTIHLGERDCSIQRRLQKLLEESPS---PA-LDSEI 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +++   A  A +A+G  G    +F++D   ++ +++E+N 
Sbjct: 252 REQMGEAAVKAAKAVGYTGAGTVEFIYDYREQRYYFMEMNT 292


>gi|120612620|ref|YP_972298.1| cyanophycin synthetase [Acidovorax citrulli AAC00-1]
 gi|120591084|gb|ABM34524.1| cyanophycin synthetase [Acidovorax citrulli AAC00-1]
          Length = 861

 Score = 71.3 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 22/112 (19%), Positives = 49/112 (43%), Gaps = 5/112 (4%)

Query: 88  ALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIV-I 144
           +++ DK  +K+++ + GVPV     V            +  P V+KP  G    G+ V I
Sbjct: 200 SIAQDKDLTKRLLHAAGVPVPLGRPVADLEDAWKVAEEVGLPVVVKPQDGNQGKGVTVNI 259

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK 196
                +      + ++   D++++E+++ G +    V+G+  +       P+
Sbjct: 260 TTRAQLEAAYATARAF--SDEVMVERFLPGHDFRLLVVGNQLVAAARREPPQ 309


>gi|86607545|ref|YP_476307.1| phosphoribosylamine--glycine ligase [Synechococcus sp.
           JA-2-3B'a(2-13)]
 gi|86556087|gb|ABD01044.1| phosphoribosylamine--glycine ligase [Synechococcus sp.
           JA-2-3B'a(2-13)]
          Length = 431

 Score = 71.3 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 45/215 (20%), Positives = 80/215 (37%), Gaps = 26/215 (12%)

Query: 68  VQAI---LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI 124
           VQ I    +   +P       A+ L   K+ +KQ++   G+P   +      +    +L 
Sbjct: 77  VQGIVDAFQAAGLPIFGPSRAAAQLEGSKLWAKQLMQEAGIPTARATGFAELSAAVAYLD 136

Query: 125 --SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
             S P VIK     +  G+ V +  +     L  + +   GDQ+LIE+++ G E++   +
Sbjct: 137 SQSFPVVIKKDGLAAGKGVTVAQNREEAVQALEAALA-KPGDQVLIEEFIPGQEVSVLAL 195

Query: 183 GDASLDVTEIAVPKSDFYSY------ELKYSSLNSTHVLPAK--IPLDIYKEVQRL---- 230
            D       I VP      Y      +   ++       PA   +  ++   +Q      
Sbjct: 196 TDGQ-----ICVPLPPAQDYKRLGEGDTGPNTGGMGAHAPADHLVTPELLARIQAQILDP 250

Query: 231 AFLAHQAIGCR--GISRSDFLFDPLSRKVFWLEIN 263
              A Q  G R  G+  +  +  P     + LE N
Sbjct: 251 TLEALQRRGIRYQGVIYAGLMITPS-GDPYVLEYN 284


>gi|15618106|ref|NP_224391.1| acetyl-CoA carboxylase biotin carboxylase subunit [Chlamydophila
           pneumoniae CWL029]
 gi|33241520|ref|NP_876461.1| acetyl-CoA carboxylase biotin carboxylase subunit [Chlamydophila
           pneumoniae TW-183]
 gi|4376451|gb|AAD18335.1| Biotin Carboxylase [Chlamydophila pneumoniae CWL029]
 gi|33236028|gb|AAP98118.1| biotin carboxylase [Chlamydophila pneumoniae TW-183]
          Length = 454

 Score = 71.3 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 84/220 (38%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---S 110
            +H  +G   E+    +I E   + +      + A+  DK+ +K +      PV P    
Sbjct: 76  AVHPGYGFLSENANFASICESCGLTFIGPSSESIAMMGDKIAAKSLAKKIKCPVIPGSEG 135

Query: 111 ILVNRFT-MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSWNHGDQ 165
           I+ +    +     I  P VIK + GG   GI ++K+             ++ +  +   
Sbjct: 136 IIEDESEGLKIAEKIGFPIVIKAVAGGGGRGIRIVKEKDEFYRAFSAARAEAEAGFNNPN 195

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE++++    L   V+GD   +   +            K             +  +I 
Sbjct: 196 VYIEKFIENPRHLEIQVIGDTHGNYVHLGERDCTIQRRRQK----LIEETPSPILNAEIR 251

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +V ++A    ++ G   +   +FL D   +K +++E+N 
Sbjct: 252 VKVGKVAVDLARSAGYFSVGTVEFLLDK-DKKFYFMEMNT 290


>gi|219669223|ref|YP_002459658.1| carbamoyl-phosphate synthase, large subunit [Desulfitobacterium
           hafniense DCB-2]
 gi|219539483|gb|ACL21222.1| carbamoyl-phosphate synthase, large subunit [Desulfitobacterium
           hafniense DCB-2]
          Length = 1079

 Score = 71.3 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 55/287 (19%), Positives = 107/287 (37%), Gaps = 35/287 (12%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQIDVD---------------------RSVGLV 45
           G ++E + +   G     AL + G +V  ++ +                     +++  +
Sbjct: 21  GQAAEFDYA---GTQACKALREVGIEVILVNSNPATIMTDEQMADRIYLEPLLPQNLEGI 77

Query: 46  LAHLKPDLAFNVLHGNFGED--GLVQ--AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           LA  +PD     L G  G +    +Q   ILE   +            + D+   K+ + 
Sbjct: 78  LAQERPDALLPTLGGQTGLNLAMKLQEEGILERYGVALIGCNAETIYKAEDREAFKETML 137

Query: 102 SCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G P+  S +V      +        P +++P       G    K ++ +   L +   
Sbjct: 138 EIGEPLAESAIVTSLEEGLAFTARRGYPVIVRPAYTLGGTGGGFAKNEKELLEVLHRGLQ 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   Q L+E+ V G  E+   VM DA  +   I V   +     +   + +S  V P++
Sbjct: 198 ASPIHQCLLERSVAGWKEIEYEVMRDAMDN--CITVCNMENID-PVGIHTGDSIVVAPSQ 254

Query: 219 -IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +    Y+ ++  +    +A+G  G     F  DP SR+   +E+N 
Sbjct: 255 TLTDGEYQMLRSSSLKIIRALGVNGGCNVQFALDPESREYVVIEVNP 301



 Score = 67.5 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 33/220 (15%), Positives = 83/220 (37%), Gaps = 13/220 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ--HLISPPYV 129
           L+   +    S + A   + D+ R  Q++   G+P          +        +  P +
Sbjct: 646 LQKAGVRILGSQVDAIDKAEDRERFAQLLLELGIPQSEGCAATSVSQARAIAGELGFPVL 705

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           ++P        + V++    +   L ++ + +    +L+++Y++G E+    + D  + V
Sbjct: 706 VRPSYVIGGRAMQVVEDLAELEGYLTRAITLSPEHPILVDRYLEGKEVEVDAIADGEITV 765

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               +   +           +S  V P + +     +++Q       + +  RG+    F
Sbjct: 766 IPGIMEHIERAGVHS----GDSLAVYPTQSLTPAEIQQIQDYTCRIAKGMEVRGLLNIQF 821

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           +   ++ KV+ +E+N +   T     P ++   G     L
Sbjct: 822 VV--VNGKVYVIEVNPRASRT----VPILSKVTGIPLVAL 855


>gi|308511379|ref|XP_003117872.1| CRE-PCCA-1 protein [Caenorhabditis remanei]
 gi|308238518|gb|EFO82470.1| CRE-PCCA-1 protein [Caenorhabditis remanei]
          Length = 726

 Score = 71.3 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 82/221 (37%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+    A LE     +      A     DK+ SK++ ++  V + P    
Sbjct: 125 AVHPGYGFLSENTKFAAELEKAGAKFIGPNSKAILDMGDKIHSKKIATAARVSMIPGFDG 184

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGD 164
                D        I  P +IK   GG   G+ V   D+             +SS+   D
Sbjct: 185 EIADEDMCVKVSRDIGYPVMIKASAGGGGKGMRVAWNDKQAREGYRLSKQEAASSFG-DD 243

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           ++L+E+++D    +   ++ D   +   +   +        K           + +P ++
Sbjct: 244 RMLVEKFIDNPRHIEMQILCDKHGNALWLNERECSIQRRNQK----VIEEAPSSFVPPEM 299

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +++   A    +A+G       +FL D   R  ++LE+N 
Sbjct: 300 RRKMGEQAVQLAKAVGYDSAGTVEFLVDSQ-RNFYFLEMNT 339


>gi|294892193|ref|XP_002773941.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
 gi|239879145|gb|EER05757.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
          Length = 542

 Score = 71.3 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 40/223 (17%), Positives = 87/223 (39%), Gaps = 37/223 (16%)

Query: 71  ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ--HLISPPY 128
           + E   +P     ++ +A   DK ++++ +   G+P     L++           +  P 
Sbjct: 189 LTEAFGLPGPGPHVVEAAR--DKYKTREALERHGLPRTTHFLISCEDDIEPAGDFVGYPA 246

Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDL---------------------------LQSSSWN 161
           V+KP+ G +SLG+  +   + +                                 +++  
Sbjct: 247 VMKPVSGAASLGVKKVNSHEELLAVYRETQQLLSELVVSSGALERKNEHSDPDAVAAAGR 306

Query: 162 HGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL 221
               +++E+Y+DG E+   V+    L  T   V  +     +  Y S  +  V+P+ +P 
Sbjct: 307 ISTVVILEEYLDGQEVDVDVVLSPGLGCTFAVVTDNAP--TKEPYFSE-TWGVIPSALPR 363

Query: 222 DIYKEVQRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEIN 263
           D   ++  LA  + +A+G   G+   +  +   SR    +E+N
Sbjct: 364 DRCDQLVDLAVSSVKALGFDSGVFHVEAKYT--SRGPRLIEVN 404


>gi|239907096|ref|YP_002953837.1| hypothetical protein DMR_24600 [Desulfovibrio magneticus RS-1]
 gi|239796962|dbj|BAH75951.1| hypothetical protein [Desulfovibrio magneticus RS-1]
          Length = 405

 Score = 71.3 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 34/192 (17%), Positives = 67/192 (34%), Gaps = 10/192 (5%)

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD---SQHLISPPYVIK 131
           L +P     +  + +   K+  + +    G+  CP   +     D          P +IK
Sbjct: 83  LGLP--GPSLRDAQIGNSKLLQRTLGWQAGL-TCPRFTLCLDAQDVLRFGREHGYPLIIK 139

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P+    S G+  + ++  +      +   +H   +L E ++ G  LT        L    
Sbjct: 140 PVDNRGSFGVNRVDRESDVLPAFYDALIHSHSRGVLAETFIQGRHLTVDGYVFQGLGPRT 199

Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR-GISRSDFLF 250
           +AV          K S ++     P ++P  +Y +          A+G   G    +F+ 
Sbjct: 200 LAVATKTKLP--QKQSIIDGEITYPGELPPALYDKASAALERTAAALGFGFGFLHGEFIL 257

Query: 251 DPLSRKVFWLEI 262
                +V+  EI
Sbjct: 258 TDA-GEVYLTEI 268


>gi|325996351|gb|ADZ51756.1| Biotin carboxylase of acetyl-CoA carboxylase [Helicobacter pylori
           2018]
          Length = 455

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 37/225 (16%), Positives = 77/225 (34%), Gaps = 14/225 (6%)

Query: 49  LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
            + D  F   +G   E+     I     + +        AL  DK ++K V+   G+PV 
Sbjct: 84  FEADAIFPG-YGFLSENQNFVEICSHHSLEFIGPSAKVMALMSDKSKAKSVMKEAGMPVI 142

Query: 109 PS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSW 160
                 +   +   +    I  P +I+   GG   G+ V+     +         ++ S 
Sbjct: 143 EGSEGLLKSYQEAEEIADKIGYPVIIRAAAGGGGRGMRVVGDKSKLKNLYLAAETEALST 202

Query: 161 NHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI 219
                + +E+++     +   ++ D   +V  +          + K             +
Sbjct: 203 FGDGSVYLEKFINKPKHVEVQILADKHGNVIHVGERDCSVQRRQQKLI----EETPAVVL 258

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              + K +   A  A + IG  G    +FL D   +  +++E+N 
Sbjct: 259 EEGVRKRLLETAIKAAKYIGYVGAGTFEFLLDSNMKDFYFMEMNT 303


>gi|294892195|ref|XP_002773942.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
 gi|239879146|gb|EER05758.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
          Length = 542

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 40/223 (17%), Positives = 87/223 (39%), Gaps = 37/223 (16%)

Query: 71  ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ--HLISPPY 128
           + E   +P     ++ +A   DK ++++ +   G+P     L++           +  P 
Sbjct: 189 LTEAFGLPGPGPHVVEAAR--DKYKTREALERHGLPRTTHFLISCEDDIEPAGDFVGYPA 246

Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDL---------------------------LQSSSWN 161
           V+KP+ G +SLG+  +   + +                                 +++  
Sbjct: 247 VMKPVSGAASLGVKKVNSHEELLAVYRETQQLLSELVVSSGALERKNEHSDPDAVAAAGR 306

Query: 162 HGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL 221
               +++E+Y+DG E+   V+    L  T   V  +     +  Y S  +  V+P+ +P 
Sbjct: 307 ISTVVILEEYLDGQEVDVDVVLSPGLGCTFAVVTDNAP--TKEPYFSE-TWGVIPSALPR 363

Query: 222 DIYKEVQRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEIN 263
           D   ++  LA  + +A+G   G+   +  +   SR    +E+N
Sbjct: 364 DRCDQLVDLAVSSVKALGFDSGVFHVEAKYT--SRGPRLIEVN 404


>gi|299822516|ref|ZP_07054402.1| pyruvate carboxylase [Listeria grayi DSM 20601]
 gi|299816045|gb|EFI83283.1| pyruvate carboxylase [Listeria grayi DSM 20601]
          Length = 1182

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 35/243 (14%), Positives = 81/243 (33%), Gaps = 25/243 (10%)

Query: 35  QIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSM 91
            +D+D ++  +      D     +H  +G   E+       E   I +         +  
Sbjct: 99  YLDID-NIIEIAKESNAD----AIHPGYGFLSENIEFAKRCEQEGIIFIGPKSKHLDMFG 153

Query: 92  DKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147
           DK+++K+     G+PV P     +               P +IK   GG   G+ V+   
Sbjct: 154 DKIKAKEQALLAGIPVIPGSNGPVSGVEEVEAFGEKNGYPLMIKASLGGGGRGMRVVNSK 213

Query: 148 QS----IPLDLLQSSSWNHGDQLLIEQ-YVDGIELTCGVMGDASLDVTEIAVPKSDFYSY 202
                       ++ +    D++ +E+  ++   +   ++ D   ++  +          
Sbjct: 214 AEVKDSYERAASEAKAAFGNDEVYVEKCVINPKHIEVQILADKHGNIVHLFERDCSIQRR 273

Query: 203 ELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
             K        V P + I  D+ + +   A    + +        +FL      + +++E
Sbjct: 274 HQK-----VVEVAPCQAITEDLRERICNAAVKLMENVQYVNAGTVEFLV--EGEEFYFIE 326

Query: 262 INV 264
           +N 
Sbjct: 327 VNP 329


>gi|114764713|ref|ZP_01443898.1| methylcrotonyl-CoA carboxylase, alpha subunit [Pelagibaca
           bermudensis HTCC2601]
 gi|114542913|gb|EAU45934.1| methylcrotonyl-CoA carboxylase, alpha subunit [Roseovarius sp.
           HTCC2601]
          Length = 648

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 45/225 (20%), Positives = 86/225 (38%), Gaps = 23/225 (10%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      +E   + +   G  A      K  +K+++   GVPV P    
Sbjct: 77  AIHPGYGFLSENPDFVEAVEAAGLVFVGPGAAAIRAMGLKDAAKRLMHEAGVPVVPGYHG 136

Query: 114 N----RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG----DQ 165
                RF       I  P +IK + GG   G+ ++++ ++    L  + +   G    + 
Sbjct: 137 EAQDARFLAGEAEAIGYPVLIKAVAGGGGKGMRLVERAEAFADALKSAQAEARGAFGNEA 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           +LIE++V     +   V GD +  V              L+          PA  +  ++
Sbjct: 197 VLIEKFVSKPRHIEVQVFGDGTRAV------HLFERDCSLQRRHQKVIEEAPAPGMTQEM 250

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR----KVFWLEINV 264
            + +   A  A +AIG +G    +F+ D          +++E+N 
Sbjct: 251 RQAMGAAAVRAAEAIGYKGAGTIEFIVDGSRGLRPDGFWFMEMNT 295


>gi|299535895|ref|ZP_07049215.1| carbamoyl-phosphate synthase pyrimidine-specific large chain
           [Lysinibacillus fusiformis ZC1]
 gi|298728647|gb|EFI69202.1| carbamoyl-phosphate synthase pyrimidine-specific large chain
           [Lysinibacillus fusiformis ZC1]
          Length = 1065

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 56/302 (18%), Positives = 116/302 (38%), Gaps = 37/302 (12%)

Query: 20  KACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFNVL 58
           +AC S L++ G++V  I+ + +                     V  +L   +PD     L
Sbjct: 32  QACLS-LKEEGYRVILINSNPATIMTDTEIADKVYIEPITLDFVSRILRKERPDAILPTL 90

Query: 59  HGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
            G  G +  ++     IL+ L I    + + A   + D+   + ++   G PV  S +++
Sbjct: 91  GGQTGLNMAIELDKSGILDELGIEILGTKLDAIHKAEDRDLFRNLMYELGAPVPESDIIH 150

Query: 115 RFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                 +    I  P +++P       G  +   DQ +   +     ++   Q L+E+ +
Sbjct: 151 NLDEAKRFVAKIGYPVIVRPAFTLGGTGGGICYNDQDLEEIVTSGLKYSPVTQCLLEKSI 210

Query: 173 DG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRL 230
            G  E+   VM DA+ +   I V   +     +   + +S  V P + +     + ++ +
Sbjct: 211 AGYKEIEYEVMRDAADNA--IVVCNMENVD-PVGIHTGDSIVVAPTQTLSDRENQMLRNI 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    +A+   G        DP S   + +E+N  P ++  S     +   GY   +L  
Sbjct: 268 SLDIIRALKIEGGCNVQLALDPYSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325



 Score = 60.9 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 22/217 (10%), Positives = 75/217 (34%), Gaps = 20/217 (9%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC--PSILVNRFTMDSQHLISPPYV 129
           L    +    + +     + ++ + +Q +    +P     + +     +     +  P +
Sbjct: 646 LAANGVKILGTSLEDIDRAENRDKFEQALRELDIPQPQGETAVSTEEALVIGERLGFPVL 705

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS--- 186
           ++P        + ++   + +   +  +   +    +L+++Y+ G E+    + D     
Sbjct: 706 VRPSYVLGGRAMEIVYNQEELQHYMENAVEASPDHPVLVDRYLTGQEIEVDAICDGENVL 765

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISR 245
           +      + ++  +S        +S  V P + +       +        + +G  G+  
Sbjct: 766 IPGIMEHIERAGVHS-------GDSISVYPPQKLTQAQKDTLVDYTTRLAKGLGIIGLMN 818

Query: 246 SDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277
             ++      +VF +E+N       P ++ ++  P  
Sbjct: 819 IQYVISQ--NEVFVIEVNPRSSRTVPFLSKITNIPMA 853


>gi|297622731|ref|YP_003704165.1| carbamoyl-phosphate synthase large subunit [Truepera radiovictrix
           DSM 17093]
 gi|297163911|gb|ADI13622.1| carbamoyl-phosphate synthase, large subunit [Truepera radiovictrix
           DSM 17093]
          Length = 1027

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 50/292 (17%), Positives = 107/292 (36%), Gaps = 35/292 (11%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH-----GNFGEDG---- 66
           AL++AG++   I         D D +  L    L  +   NV+      G   + G    
Sbjct: 580 ALKEAGYETIMINSNPETVSTDYDTADRLYFEPLTFEDVLNVIEREEPAGVIVQLGGQTP 639

Query: 67  -LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--FTMDSQHL 123
             + A LE   +P   +   A A + D+    ++ +  GVP     +  R    +     
Sbjct: 640 LKLAAPLEAAGVPIWGTPARAIAEAEDRDAFHRLCARLGVPQPAGGVAQRPAEALTLAAS 699

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ-LLIEQYVDG-IELTCGV 181
           +  P +++P        + V++ + ++   L +  +   G   +L++ +V G  E+    
Sbjct: 700 LGYPLMVRPSFVLGGRAMQVVEDEGALERYLREVYAELPGSPSILLDAFVAGAQEVDVDA 759

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241
           + D    V    +   +       +S  ++    P  +  ++   +   +    +AIG R
Sbjct: 760 LADGERVVVAGIMEHIEGAGV---HSGDSACITPPVSLSDEVIATLHDYSTRLARAIGVR 816

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS---FRELLL 290
           G+    F+      +V  +E N +   T     P ++   G+    +  L+ 
Sbjct: 817 GLINLQFVV--KGGEVLVIEANPRASRT----VPYLSKAIGHPLAKYAALIA 862



 Score = 68.2 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 58/293 (19%), Positives = 97/293 (33%), Gaps = 46/293 (15%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQIDVD---------------------RSVGLV 45
           G ++E + S   G     AL  AGF+V  I+ +                          V
Sbjct: 21  GQAAEFDYS---GTQACKALRAAGFEVVLINANPATIMTDPEVADRTYIEPLTPEVAERV 77

Query: 46  LAHLKPDLAFNVLHGNFG--------EDGLVQAILELLEIPYTHSGILASALSMDKMRSK 97
           +A  +PD     L G           E G    +LE   +    +   A     D+   +
Sbjct: 78  IAQERPDALLPTLGGQTALNLAKALYETG----VLERYGVELIGANYEAINKGEDRELFQ 133

Query: 98  QVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
             +   G+      +V      +D    I  P +I+P       G  V   +      + 
Sbjct: 134 AAMRKIGIKTPAGKMVGSLEEALDFVATIGYPAIIRPSFTLGGTGGGVAYDEAEFRQIVR 193

Query: 156 QSSSWNHGDQLLIEQYVDG-IELTCGVMGD-ASLDVTEIAVPKSDFYSYELKYSSLNSTH 213
           +    +    +L+EQ V G  E    VM D     V   ++   D           +S  
Sbjct: 194 RGLHDSPVHTVLVEQSVLGWKEYELEVMRDHNDTVVIICSIENVDPMGVHT----GDSIT 249

Query: 214 VLPAK-IPLDIYKEVQRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
           V PA+ +    Y+ ++  A    + IG   G S   F  +P + +V  +E+N 
Sbjct: 250 VAPAQTLSDKEYQRLRDDAIAIIREIGVDTGGSNIQFAVNPRNGEVMVIEMNP 302


>gi|212639971|ref|YP_002316491.1| carbamoyl phosphate synthase large subunit [Anoxybacillus
           flavithermus WK1]
 gi|212561451|gb|ACJ34506.1| Carbamoylphosphate synthase large subunit [Anoxybacillus
           flavithermus WK1]
          Length = 1034

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 49/279 (17%), Positives = 95/279 (34%), Gaps = 41/279 (14%)

Query: 11  EREVSLSSGKACASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGN 61
           E + S  S      AL+ AG++   I         D   +  L    L  +   NV+   
Sbjct: 572 EFDYS--SVHCVY-ALQQAGYEAILINNNPETVSTDFTVADRLYFEPLTVEDVLNVVEAE 628

Query: 62  FGEDGLVQ----------AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
             E  +VQ          + LE   +              D+ R   ++ S  +P     
Sbjct: 629 NVEAVIVQFGGQTAINLASKLEAYGVSIIGMNSDTIDQLEDRERFYTLLQSLDIPHVKGA 688

Query: 112 LVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
           + N  T        I  P +++P       G+ ++   Q +   + Q   +     +LI+
Sbjct: 689 MANDETELWRKVEEIGYPLLLRPSYVIGGRGMHIVHDKQQLSALVEQGIVY----PVLID 744

Query: 170 QYVDGIELTCGVMGDAS---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYK 225
           +YV   E     + D     +      V K+  +S        +S  +LPA+    +  +
Sbjct: 745 EYVRAKEGELDAICDGYDAFVPTIIEHVEKTGVHS-------GDSYALLPAQSFTKEEKE 797

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           ++        + +  +G+    F+      +V+ LE+N 
Sbjct: 798 KMIDYTKRITKKLYFKGLMNVQFIVR--DGEVYVLEVNP 834



 Score = 60.1 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 60/321 (18%), Positives = 115/321 (35%), Gaps = 44/321 (13%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVS------------QIDVD---------RSVGLV 45
           G ++E + S   G     AL++ G++V             ++  D          S+  +
Sbjct: 21  GQAAEFDYS---GTQGCLALKEEGYRVILANNNPATIMTDEVHADAVYFEPLTVESIEKI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +A  +PD     L G  G +       + IL+   +    + I +     D+   + ++ 
Sbjct: 78  IAKERPDGLLATLGGQTGLNLAFALHERGILQKYNVRLLGTPIESIQRGEDREAFRALMY 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
               PV  S +V      +     I  P +++P       G  + +    +   + +   
Sbjct: 138 ELNEPVPESEIVTTVEEAVQFAKQIGFPIIVRPAYTLGGTGGGIAETMDELVDIVTKGLQ 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   Q L+E+ V G  E+   VM D +     I   ++      +   + +S  V P++
Sbjct: 198 ESPITQCLVERSVAGFKEIEYEVMRDHTNTCITICNMEN---IDPVGIHTGDSIVVAPSQ 254

Query: 219 -IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV-------QPGMTP 270
            +    Y  ++  A     A+G  G     F  DP S+K + +E+N              
Sbjct: 255 TLTDVEYHMLRSAAIKIISALGVVGGCNIQFALDPKSKKYYLIEVNPRVSRSSALASKAT 314

Query: 271 VSIFPEMAA--YAGYSFRELL 289
                 MAA    GY+  EL+
Sbjct: 315 GYPIARMAAKLAVGYTLAELI 335


>gi|108757446|ref|YP_633904.1| acetyl-CoA carboxylase biotin carboxylase subunit [Myxococcus
           xanthus DK 1622]
 gi|108461326|gb|ABF86511.1| acetyl-CoA carboxylase, biotin carboxylase [Myxococcus xanthus DK
           1622]
          Length = 461

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 32/220 (14%), Positives = 82/220 (37%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     + E  +I +         L  +K+R++Q     G+P+ P    
Sbjct: 77  AIHPGYGFLSENAEFAEVCENCKIRFIGPRPEMLRLMGNKVRARQAAREAGLPLLPGSPG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGDQ 165
            +   R        I  P ++K   GG   G+ ++++  ++         ++ +      
Sbjct: 137 TVKDPREAEAFAREIGFPVILKAAAGGGGKGMKIVREPGALAQAFSTAQAEAVASFSNGD 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           L IE+YV+    +   ++ D   ++  +   +        K             +  ++ 
Sbjct: 197 LYIERYVEKPRHIEIQIVADEHGNIVHLNERECSVQRRHQK----LIEESPSPALTPELR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K +  ++  A + +    +   ++L D    + +++E+N 
Sbjct: 253 KRMGEVSVNAMRRLAYNNVGTIEYLLDER-GEFYFMEMNT 291


>gi|332981725|ref|YP_004463166.1| cyanophycin synthetase [Mahella australiensis 50-1 BON]
 gi|332699403|gb|AEE96344.1| cyanophycin synthetase [Mahella australiensis 50-1 BON]
          Length = 879

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 24/110 (21%), Positives = 51/110 (46%), Gaps = 5/110 (4%)

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--QHLISPPYVIKPLKGGSSLGIIV-IK 145
           ++ DKM +K +++  G+PV      +           I  P V+KP  G    G+ + + 
Sbjct: 211 IACDKMITKSILADIGIPVPIGQSCSEADEAISIAESIGYPVVVKPKGGNQGKGVWLELN 270

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195
             +++      +S +    ++++E+Y+ G +    V+GD  + V+E   P
Sbjct: 271 NPEAVKQAFKSASLF--DQEIIVEKYIKGRDYRVLVVGDKIIAVSEKIPP 318


>gi|319944202|ref|ZP_08018478.1| carbamoyl-phosphate synthase, large subunit [Lautropia mirabilis
           ATCC 51599]
 gi|319742497|gb|EFV94908.1| carbamoyl-phosphate synthase, large subunit [Lautropia mirabilis
           ATCC 51599]
          Length = 1088

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 46/278 (16%), Positives = 97/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL   G++V  +         D D            + +  ++   +P     
Sbjct: 29  SGAQACKALRQEGYRVVLVNSNPATIMTDPDMADVTYIEPITWQVLERIIEKERPSAILP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      +L+   +    +   A   + D+ + KQ + S G+    S +
Sbjct: 89  TMGGQTALNCALDLHRHGVLDKYGVELIGARPEAIEKAEDRQKFKQAMESIGLGSARSAI 148

Query: 113 VNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +      ++Q  I  P +I+P       G  +    +            +  ++LLIE+
Sbjct: 149 AHSMDEAWEAQRDIGFPVIIRPSFTLGGTGGGIAYNAEEFETICKTGLELSPTNELLIEE 208

Query: 171 YVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D   + +   ++   D           +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEFEMEVVRDREDNCIIVCSIENLDPMGVHT----GDSITVAPAQTLTDKEYQLM 264

Query: 228 QRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F   P + ++  +E+N 
Sbjct: 265 RNASIAVLREIGVDTGGSNVQFAIHPETGRMIVIEMNP 302



 Score = 68.2 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 31/205 (15%), Positives = 84/205 (40%), Gaps = 15/205 (7%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--FTMDSQHLISPPYV 129
           LE   +P   +   +  ++ D+ R +++++  G+   P+         +   + I  P V
Sbjct: 648 LEAAGVPIIGTSPDSIDVAEDRERFQKLLTRLGLLQPPNRTARTEGEAIQLANEIGYPLV 707

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++   + +   + ++   ++   +L+++++ D IE+    + D    
Sbjct: 708 VRPSYVLGGRAMEIVHDQRDLERYMREAVKVSNDSPVLLDRFLNDAIEVDVDCLCDGERV 767

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           V    +   +       +S  ++  + P  +   + +E++R   L  +A+  RG+    F
Sbjct: 768 VIGGVMEHIEQAGV---HSGDSACSLPPYSLSPVLVEEIKRQTVLMAKALKVRGLMNVQF 824

Query: 249 LF---------DPLSRKVFWLEINV 264
                       P + +V+ LE+N 
Sbjct: 825 AIQREPAEQEGQPPTERVYVLEVNP 849


>gi|298364402|gb|ADI79337.1| chloroplast biotin carboxylase [Brassica rapa]
          Length = 535

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 79/220 (35%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
           +LH  +G   E+ L   +     I +      +  +  DK  +++ + +  VP  P    
Sbjct: 147 MLHPGYGFLAENALFVEMCREHRINFIGLNPDSIRVMGDKSTARETMKNASVPTVPGSDG 206

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS----IPLDLLQSSSWNHGDQ 165
            +      +   + I  P +IK   GG   G+ +  +       +     ++++    D 
Sbjct: 207 LLQSTEEGVRLANEIGYPVMIKATAGGGGRGMRLANEPSEFVKLLQQAKSEAAAAFGNDG 266

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+YV +   +   ++ D   +V               K             +  ++ 
Sbjct: 267 VYLEKYVQNPRHIEFQILADKFGNVVHFGERDCSIQRRNQKLL----EEAPSPALTPELR 322

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K +   A  A  +IG  G+   +FL D      +++E+N 
Sbjct: 323 KAMGDAAVAAAASIGYIGVGTVEFLLDER-GSFYFMEMNT 361


>gi|170032630|ref|XP_001844183.1| pyruvate carboxylase, mitochondrial [Culex quinquefasciatus]
 gi|167873013|gb|EDS36396.1| pyruvate carboxylase, mitochondrial [Culex quinquefasciatus]
          Length = 1198

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 30/205 (14%), Positives = 77/205 (37%), Gaps = 17/205 (8%)

Query: 69  QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLI 124
           QA+++   + +            DK+ +++     GVP+ P     +      +D     
Sbjct: 130 QAVID-AGLRFIGPSPKVVQQMGDKVAARKAAIEAGVPIVPGTDGPVTTKEEALDFCKKH 188

Query: 125 SPPYVIKPLKGGSSLGIIVI----KKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTC 179
             P + K   GG   G+ V+    + + +      ++ +      + IE++++    +  
Sbjct: 189 GLPVIFKAAYGGGGRGMRVVRKMEEVEDNFQRASSEAKAAFGNGAMFIERFIERPRHIEV 248

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAI 238
            ++GD + +V  +           ++        + PA ++  ++  ++   A    + +
Sbjct: 249 QLLGDKAGNVVHLYE-----RDCSVQRRHQKVVEIAPAPRLAREVRDKMTEYAVKLARHV 303

Query: 239 GCRGISRSDFLFDPLSRKVFWLEIN 263
           G       +FL D      F++E+N
Sbjct: 304 GYENAGTVEFLCDETGN-FFFIEVN 327


>gi|148256245|ref|YP_001240830.1| putative acyl-CoA carboxylase biotin-carrying subunit
           [Bradyrhizobium sp. BTAi1]
 gi|146408418|gb|ABQ36924.1| biotin carboxylase / biotin carboxyl carrier protein
           [Bradyrhizobium sp. BTAi1]
          Length = 671

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 74/220 (33%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H  +G   E       L    I +      A A   DK+ SK+  +   V   P  L 
Sbjct: 77  AVHPGYGFLSEREAFPRALAENGIVFIGPNPGAIAAMGDKIESKKAAAKAKVSTVPGFLG 136

Query: 113 ---VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS----IPLDLLQSSSWNHGDQ 165
               ++  +     I  P +IK   GG   G+ +            L   ++ +    D+
Sbjct: 137 VIEDDKHAVRIADEIGYPVMIKASAGGGGKGMRIAHSTAEVTEGFNLAKAEAKASFGDDR 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+++ D   +   V+GD   +V  +   +        K             +  +  
Sbjct: 197 VFIEKFIVDPRHIEIQVLGDKHGNVIYLGERECSIQRRNQK----VIEEAPSPLLDEETR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +++   A    +A+        +F      +  ++LE+N 
Sbjct: 253 RKMGEQAVALAKAVNYDSAGTVEF-VAGQDKSFYFLEMNT 291


>gi|41407009|ref|NP_959845.1| hypothetical protein MAP0911c [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|41395360|gb|AAS03228.1| AccA2 [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 663

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 42/218 (19%), Positives = 82/218 (37%), Gaps = 22/218 (10%)

Query: 58  LHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
           LH  +G   E+      +    + +    + A      K+ SK+++++ GVPV     ++
Sbjct: 76  LHPGYGFLSENADFATAVADAGLTWVGPPVDAVRAMGSKIESKKLMAAAGVPV-----LD 130

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK----DQSIPLDLLQSSSWNHGDQLLIEQ 170
               D+      P ++K   GG   G+ V+ +       +     ++ S      +  E+
Sbjct: 131 ELDPDTVTEAQLPVLVKASAGGGGRGMRVVHELSALRGEVEAARREAQSAFGDPTVFCER 190

Query: 171 YV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI---PLDIYKE 226
           Y+  G  +   V+ DA   V  +   +        K          P+ +      +  +
Sbjct: 191 YLPTGHHVEVQVLADAHGTVWAVGERECSIQRRHQK-----IIEEAPSPLVERTPGMRAK 245

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +   A LA  AIG  G    +FL D    + ++LE+N 
Sbjct: 246 LFEAARLAAGAIGYTGAGTVEFLAD-DDGEFYFLEMNT 282


>gi|301159929|emb|CBW19448.1| biotin carboxylase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. SL1344]
          Length = 419

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 42/222 (18%), Positives = 81/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         L  DK+ +   +   GVP  P    
Sbjct: 47  AIHPGYGFLSENANFAEQVERSGFIFIGPKADTIRLMGDKVSAITAMKKAGVPTVPGSDG 106

Query: 112 -LVNRFTMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
            L +    +  H   I  P +IK   GG   G+ V++ D  +   +     ++ +    D
Sbjct: 107 PLGDDMNANRAHAKRIGYPVIIKASGGGGGRGMRVVRSDAELAQSISMTKAEAKAAFSND 166

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+Y++    +   V+ D   +   +A           K          PA  I  +
Sbjct: 167 MVYMEKYLENPRHIEIQVLADGQGNAIYLAERDCSMQRRHQK-----VVEEAPAPGITPE 221

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + + +      A   IG RG    +FLF   + + +++E+N 
Sbjct: 222 LRRYIGERCAKACVDIGYRGAGTFEFLF--ENGEFYFIEMNT 261


>gi|293402139|ref|ZP_06646278.1| acetyl-CoA carboxylase, biotin carboxylase subunit
           [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291304531|gb|EFE45781.1| acetyl-CoA carboxylase, biotin carboxylase subunit
           [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 455

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 80/220 (36%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  FG   E+     +++   + +            DK  ++QV+   GVPV P    
Sbjct: 77  AIHPGFGFLSENAKFARLVQQCGLIFIGPSPDIIDKMGDKNHARQVMIKAGVPVIPGSKD 136

Query: 111 ILVNRFTMDS-QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
           IL  +    +    I  P +IK   GG   G+      + +      + +        D 
Sbjct: 137 ILKTKEDALAMAESIGYPVLIKAANGGGGRGMRRADCAEEVMDAYETARAEAKVCFGDDA 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+++ +   +   +MGD   +V  +            K       H     +  +  
Sbjct: 197 VYMEKFIVEPKHVEVQLMGDHFGNVLHLYERDCSCQRRNQKLLEEAQCHT----LDANTR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             + + A  A +A+G   +   +FL D    + +++E+N 
Sbjct: 253 NHLLQDAVNACKAVGYDSVGTIEFLLDAR-GQYYFMEMNT 291


>gi|259906963|ref|YP_002647319.1| acetyl-CoA carboxylase biotin carboxylase subunit [Erwinia
           pyrifoliae Ep1/96]
 gi|224962585|emb|CAX54040.1| Acetyl CoA carboxylase, biotin carboxylase subunit [Erwinia
           pyrifoliae Ep1/96]
 gi|283476757|emb|CAY72595.1| acetyl-CoA carboxylase biotin carboxylase subunit [Erwinia
           pyrifoliae DSM 12163]
 gi|310766178|gb|ADP11128.1| acetyl-CoA carboxylase biotin carboxylase subunit [Erwinia sp.
           Ejp617]
          Length = 449

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 39/222 (17%), Positives = 79/222 (35%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+      +E     +         L  DK+ +   +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAEQVERSGFIFIGPKADTIRLMGDKVSAITAMKKAGVPTVPGSDG 136

Query: 111 --ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
                          I  P +IK   GG   G+ V++ D+ +   +     ++ +  + D
Sbjct: 137 PLTEDMDKNRAFAKRIGYPVIIKASGGGGGRGMRVVRSDKELEQSINMTKAEAKAAFNND 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+Y++    +   V+ D   +   +A           K          PA  I  +
Sbjct: 197 MVYMEKYLENPRHIEIQVLADGQGNAIYLAERDCSMQRRHQK-----VVEEAPAPGITEE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + + +      A   IG RG    +FL+   + + +++E+N 
Sbjct: 252 MRRYIGERCSKACIDIGYRGAGTFEFLY--ENGEFYFIEMNT 291


>gi|153825895|ref|ZP_01978562.1| carbamoyl-phosphate synthase, large subunit [Vibrio cholerae MZO-2]
 gi|149740393|gb|EDM54524.1| carbamoyl-phosphate synthase, large subunit [Vibrio cholerae MZO-2]
          Length = 1076

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 34/197 (17%), Positives = 77/197 (39%), Gaps = 10/197 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           LE   +P   +   A   + D+ R +Q V   G+    +  V      ++    I  P V
Sbjct: 653 LEAAGVPVIGTSPDAIDRAEDRERFQQAVQRLGLKQPDNATVTAIEQAIEKSREIGFPLV 712

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  +Q +     ++ S ++   +L+++++ D  E+    + D    
Sbjct: 713 VRPSYVLGGRAMEIVYDEQDLRRYFNEAVSVSNESPVLLDRFLDDATEVDVDAICDGERV 772

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           V    +   +    +    S +S   LPA  +  +I  +++         +G RG+    
Sbjct: 773 VIGGIMEHIE----QAGVHSGDSACSLPAYTLSQEIQDKMREQVEKLAFELGVRGLMNIQ 828

Query: 248 FLFDPLSRKVFWLEINV 264
           F       +V+ +E+N 
Sbjct: 829 FAV--KDNEVYLIEVNP 843



 Score = 59.4 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 44/278 (15%), Positives = 95/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D +              V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAILP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV--PVCPS 110
            + G    +  +      +L    +    +   A   + D+ R  + + S G+  P   +
Sbjct: 89  TMGGQTALNCALALEKHGVLAEFGVEMIGATADAIDKAEDRSRFDKAMKSIGLECPRADT 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                       ++  P +I+P       G  +    +       +    +  ++LLI++
Sbjct: 149 AKSMEEAYKVLDMVGFPCIIRPSFTMGGSGGGIAYNREEFEEICTRGLDLSPTNELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + + +   A+   D           +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCAIENFDPMGIHT----GDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P   ++  +E+N 
Sbjct: 265 RNASLAVLREIGVETGGSNVQFGINPKDGRMVIIEMNP 302


>gi|298207058|ref|YP_003715237.1| acetyl-CoA carboxylase, biotin carboxylase [Croceibacter atlanticus
           HTCC2559]
 gi|83849692|gb|EAP87560.1| acetyl-CoA carboxylase, biotin carboxylase [Croceibacter atlanticus
           HTCC2559]
          Length = 458

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 80/221 (36%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+     I E  +I +  +         DK  ++  + + GVP  P    
Sbjct: 88  AIHPGYGFLAENSKFSKICEEHDIKFIGASPDMIDKMGDKASARATMQAAGVPCIPGSDG 147

Query: 112 LVNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS-----SSWNHGD 164
           L+  F         +  P ++K   GG   G+  + K + +      +     +++ +  
Sbjct: 148 LLKDFAECKKVAKDMGYPVMLKATAGGGGKGMRAVWKPEDLEDAWDSARQEAGAAFGNDG 207

Query: 165 QLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
             + E+ ++    +   V+GD++     ++           K     +       +   +
Sbjct: 208 MYM-EKLIEEPRHIEIQVVGDSTGKACHLSERDCSVQRRHQK----LTEETPSPFMTTAL 262

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            K++   A  A + I   G    +FL D   R  +++E+N 
Sbjct: 263 RKKMGEAAVKAAEYIKYEGAGTVEFLVDKH-RNFYFMEMNT 302


>gi|15642386|ref|NP_232019.1| carbamoyl phosphate synthase large subunit [Vibrio cholerae O1
           biovar El Tor str. N16961]
 gi|121591079|ref|ZP_01678391.1| carbamoyl-phosphate synthase, large subunit [Vibrio cholerae
           2740-80]
 gi|147673654|ref|YP_001217891.1| carbamoyl phosphate synthase large subunit [Vibrio cholerae O395]
 gi|153217328|ref|ZP_01951079.1| carbamoyl-phosphate synthase, large subunit [Vibrio cholerae 1587]
 gi|153802029|ref|ZP_01956615.1| carbamoyl-phosphate synthase, large subunit [Vibrio cholerae MZO-3]
 gi|153823336|ref|ZP_01976003.1| carbamoyl-phosphate synthase, large subunit [Vibrio cholerae B33]
 gi|153828839|ref|ZP_01981506.1| carbamoyl-phosphate synthase, large subunit [Vibrio cholerae
           623-39]
 gi|227082512|ref|YP_002811063.1| carbamoyl-phosphate synthase, large subunit [Vibrio cholerae M66-2]
 gi|229507548|ref|ZP_04397053.1| carbamoyl-phosphate synthase large chain [Vibrio cholerae BX
           330286]
 gi|229512256|ref|ZP_04401735.1| carbamoyl-phosphate synthase large chain [Vibrio cholerae B33]
 gi|229519392|ref|ZP_04408835.1| carbamoyl-phosphate synthase large chain [Vibrio cholerae RC9]
 gi|229521221|ref|ZP_04410641.1| carbamoyl-phosphate synthase large chain [Vibrio cholerae TM
           11079-80]
 gi|229528623|ref|ZP_04418013.1| carbamoyl-phosphate synthase large chain [Vibrio cholerae 12129(1)]
 gi|229607054|ref|YP_002877702.1| carbamoyl phosphate synthase large subunit [Vibrio cholerae
           MJ-1236]
 gi|254849511|ref|ZP_05238861.1| carbamoyl-phosphate synthase [Vibrio cholerae MO10]
 gi|255746936|ref|ZP_05420881.1| carbamoyl-phosphate synthase large chain [Vibrio cholera CIRS 101]
 gi|262161521|ref|ZP_06030631.1| carbamoyl-phosphate synthase large chain [Vibrio cholerae INDRE
           91/1]
 gi|262168373|ref|ZP_06036070.1| carbamoyl-phosphate synthase large chain [Vibrio cholerae RC27]
 gi|298500250|ref|ZP_07010055.1| carbamoyl-phosphate synthase, large subunit [Vibrio cholerae MAK
           757]
 gi|22095535|sp|Q9KPH9|CARB_VIBCH RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|9656961|gb|AAF95532.1| carbamoyl-phosphate synthase, large subunit [Vibrio cholerae O1
           biovar El Tor str. N16961]
 gi|121547084|gb|EAX57220.1| carbamoyl-phosphate synthase, large subunit [Vibrio cholerae
           2740-80]
 gi|124113657|gb|EAY32477.1| carbamoyl-phosphate synthase, large subunit [Vibrio cholerae 1587]
 gi|124122439|gb|EAY41182.1| carbamoyl-phosphate synthase, large subunit [Vibrio cholerae MZO-3]
 gi|126519143|gb|EAZ76366.1| carbamoyl-phosphate synthase, large subunit [Vibrio cholerae B33]
 gi|146315537|gb|ABQ20076.1| carbamoyl-phosphate synthase, large subunit [Vibrio cholerae O395]
 gi|148875715|gb|EDL73850.1| carbamoyl-phosphate synthase, large subunit [Vibrio cholerae
           623-39]
 gi|227010400|gb|ACP06612.1| carbamoyl-phosphate synthase, large subunit [Vibrio cholerae M66-2]
 gi|227014283|gb|ACP10493.1| carbamoyl-phosphate synthase, large subunit [Vibrio cholerae O395]
 gi|229332397|gb|EEN97883.1| carbamoyl-phosphate synthase large chain [Vibrio cholerae 12129(1)]
 gi|229341753|gb|EEO06755.1| carbamoyl-phosphate synthase large chain [Vibrio cholerae TM
           11079-80]
 gi|229344081|gb|EEO09056.1| carbamoyl-phosphate synthase large chain [Vibrio cholerae RC9]
 gi|229352221|gb|EEO17162.1| carbamoyl-phosphate synthase large chain [Vibrio cholerae B33]
 gi|229355053|gb|EEO19974.1| carbamoyl-phosphate synthase large chain [Vibrio cholerae BX
           330286]
 gi|229369709|gb|ACQ60132.1| carbamoyl-phosphate synthase large chain [Vibrio cholerae MJ-1236]
 gi|254845216|gb|EET23630.1| carbamoyl-phosphate synthase [Vibrio cholerae MO10]
 gi|255735338|gb|EET90738.1| carbamoyl-phosphate synthase large chain [Vibrio cholera CIRS 101]
 gi|262023265|gb|EEY41969.1| carbamoyl-phosphate synthase large chain [Vibrio cholerae RC27]
 gi|262028832|gb|EEY47486.1| carbamoyl-phosphate synthase large chain [Vibrio cholerae INDRE
           91/1]
 gi|297540943|gb|EFH76997.1| carbamoyl-phosphate synthase, large subunit [Vibrio cholerae MAK
           757]
 gi|327484885|gb|AEA79292.1| Carbamoyl-phosphate synthase large chain [Vibrio cholerae
           LMA3894-4]
          Length = 1076

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 34/197 (17%), Positives = 77/197 (39%), Gaps = 10/197 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           LE   +P   +   A   + D+ R +Q V   G+    +  V      ++    I  P V
Sbjct: 653 LEAAGVPVIGTSPDAIDRAEDRERFQQAVQRLGLKQPDNATVTAIEQAIEKSREIGFPLV 712

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  +Q +     ++ S ++   +L+++++ D  E+    + D    
Sbjct: 713 VRPSYVLGGRAMEIVYDEQDLRRYFNEAVSVSNESPVLLDRFLDDATEVDVDAICDGERV 772

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           V    +   +    +    S +S   LPA  +  +I  +++         +G RG+    
Sbjct: 773 VIGGIMEHIE----QAGVHSGDSACSLPAYTLSQEIQDKMREQVEKLAFELGVRGLMNIQ 828

Query: 248 FLFDPLSRKVFWLEINV 264
           F       +V+ +E+N 
Sbjct: 829 FAV--KDNEVYLIEVNP 843



 Score = 59.4 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 44/278 (15%), Positives = 95/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D +              V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAILP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV--PVCPS 110
            + G    +  +      +L    +    +   A   + D+ R  + + S G+  P   +
Sbjct: 89  TMGGQTALNCALALEKHGVLAEFGVEMIGATADAIDKAEDRSRFDKAMKSIGLECPRADT 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                       ++  P +I+P       G  +    +       +    +  ++LLI++
Sbjct: 149 AKSMEEAYKVLDMVGFPCIIRPSFTMGGSGGGIAYNREEFEEICTRGLDLSPTNELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + + +   A+   D           +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCAIENFDPMGIHT----GDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P   ++  +E+N 
Sbjct: 265 RNASLAVLREIGVETGGSNVQFGINPKDGRMVIIEMNP 302


>gi|332993528|gb|AEF03583.1| methylcrotonyl-CoA carboxylase, alpha subunit [Alteromonas sp. SN2]
          Length = 696

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 78/221 (35%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+          +I +      A      K  +K+++   GVP+ P    
Sbjct: 77  AIHPGYGFLSENAEFAKACAAHDIIFVGPPASAIEAMGSKSAAKKIMEDAGVPLVPGYHG 136

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
           +         +   +  P ++K   GG   G+  + K+      L  +   +      + 
Sbjct: 137 DDQDEATLKQASDAMGYPVLLKAAAGGGGKGMRQVWKESEFSAALSAAKRESMASFGDEH 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDI 223
           +L+E+Y+     +   V  D   +   +           ++          PA   P +I
Sbjct: 197 MLVEKYLTRPRHVEIQVFCDTHGNGVYL-----FERDCSVQRRHQKVIEEAPAPNFPANI 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +++   A  A +AI   G    +FL+D      +++E+N 
Sbjct: 252 RQQMGEAALQAAKAINYVGAGTVEFLYDE-DGSFYFMEMNT 291


>gi|282162854|ref|YP_003355239.1| putative pyruvate carboxylase subunit A [Methanocella paludicola
           SANAE]
 gi|282155168|dbj|BAI60256.1| putative pyruvate carboxylase subunit A [Methanocella paludicola
           SANAE]
          Length = 723

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 35/234 (14%), Positives = 77/234 (32%), Gaps = 15/234 (6%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
            ++  V A    D      +G   E+      +      +            DK  ++  
Sbjct: 64  DALLEVAADSGCDAVHPG-YGFLSENAPFAESVRKAGATFIGPPPSVIKKLGDKTVARST 122

Query: 100 VSSCGVPVCPSILVNRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
           +   G+P+ P       + D      +    P +IK   GG   G+ ++  D  +P  L 
Sbjct: 123 MKKAGLPLIPGSTGTLRSADEAIELANRFGYPCIIKAAGGGGGRGMRLVFSDAEVPDALE 182

Query: 156 ----QSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLN 210
               ++ ++     + IE+Y+ D   +   ++ D S +V  +            K     
Sbjct: 183 SAKREAEAFFSNGDVYIEKYLEDPRHIEFQILADKSGNVIHLGERDCSIQRRHQKLL--- 239

Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
                  ++   + + +   A    +A+        +FL D      +++E+N 
Sbjct: 240 -EEAPSPRMTPVLRETMGNAAVQGAKAVKYENAGTFEFLLDKYGN-FYFMEVNT 291


>gi|270296970|ref|ZP_06203169.1| acetyl-CoA carboxylase, biotin carboxylase [Bacteroides sp. D20]
 gi|270272957|gb|EFA18820.1| acetyl-CoA carboxylase, biotin carboxylase [Bacteroides sp. D20]
          Length = 503

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 84/220 (38%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       +   I +            DK+ +++ + + GVPV P    
Sbjct: 77  AIHPGYGFLSENSEFARRCKEEGIIFIGPAAETMEAMGDKIAARKRMIAAGVPVVPGTEQ 136

Query: 114 NRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
              + +      + I  P ++K   GG   G+ +I  +  +      + S +      D 
Sbjct: 137 PLQSAEEAVRICNEIGYPVMLKASMGGGGKGMRLIHNESEVVEAYNTARSESMSSFGDDT 196

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E++V+    +   ++GD   +V  +   +        K             +  ++ 
Sbjct: 197 VYLEKFVEEPHHIEFQILGDNHGNVIHLFDRECSVQRRNQK----VVEESPSPFLTPELR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +E+   A  A +A+   G    +FL D  +R+ ++LE+N 
Sbjct: 253 REMGEKAVAAAKAVNYSGAGTIEFLVDK-NRRFYFLEMNT 291


>gi|296136808|ref|YP_003644050.1| acetyl-CoA carboxylase, biotin carboxylase [Thiomonas intermedia
           K12]
 gi|294340977|emb|CAZ89372.1| Biotin carboxylase (Acetyl-CoA carboxylase subunit A) (ACC)
           [Thiomonas sp. 3As]
 gi|295796930|gb|ADG31720.1| acetyl-CoA carboxylase, biotin carboxylase [Thiomonas intermedia
           K12]
          Length = 450

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 77/221 (34%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H  +G   E+      +E     +      +  L  DK+ +KQ +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAERVEKSGFAFIGPRPDSIRLMGDKVSAKQAMIRSGVPCVPGSEG 136

Query: 113 ----VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
                 R        I  P +IK   GG   G+ V+  + ++   +     ++ +     
Sbjct: 137 ALPDDPREITRIARSIGYPVIIKAAGGGGGRGMRVVHTEAALLNAVTMTRSEAGAAFGNP 196

Query: 165 QLLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            + +E++ +    +   V+ D   +   +            K             IP  +
Sbjct: 197 AVYMEKFLLQPRHIEIQVLADTHGNALWLGERDCSMQRRHQKIL----EEAPAPGIPRRL 252

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +      A + IG RG    +FL+   + + +++E+N 
Sbjct: 253 IERIGARCADACKKIGYRGAGTFEFLY--ENGEFYFIEMNT 291


>gi|261342708|ref|ZP_05970566.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Enterobacter
           cancerogenus ATCC 35316]
 gi|288315360|gb|EFC54298.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Enterobacter
           cancerogenus ATCC 35316]
          Length = 449

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 42/222 (18%), Positives = 82/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         L  DK+ +   +   GVP  P    
Sbjct: 77  AIHPGYGFLSENANFAEQVERSGFIFIGPKADTIRLMGDKVSAITAMKKAGVPTVPGSDG 136

Query: 112 -LVNRFTMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
            L +   ++  H   I  P +IK   GG   G+ V++ D  +   +     ++ +    D
Sbjct: 137 PLGDDMDVNRAHAKRIGYPVIIKASGGGGGRGMRVVRSDAELAQSIAMTKAEAKAAFSND 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+Y++    +   V+ D   +   +A           K          PA  I  +
Sbjct: 197 MVYMEKYLENPRHIEIQVLADGQGNAIYLAERDCSMQRRHQK-----VVEEAPAPGITPE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + + +      A   IG RG    +FLF   + + +++E+N 
Sbjct: 252 LRRYIGERCSKACVDIGYRGAGTFEFLF--ENGEFYFIEMNT 291


>gi|67517221|ref|XP_658491.1| hypothetical protein AN0887.2 [Aspergillus nidulans FGSC A4]
 gi|238054299|sp|P38095|LAMA_EMENI RecName: Full=Putative urea carboxylase; AltName: Full=Lactam
           utilization protein lamA; AltName: Full=Urea amidolyase
 gi|40746760|gb|EAA65916.1| hypothetical protein AN0887.2 [Aspergillus nidulans FGSC A4]
 gi|259488827|tpe|CBF88588.1| TPA: Putative urea carboxylase (EC 6.3.4.6)(Urea amidolyase)(Lactam
           utilization protein lamA)
           [Source:UniProtKB/Swiss-Prot;Acc:P38095] [Aspergillus
           nidulans FGSC A4]
          Length = 1241

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 33/239 (13%), Positives = 76/239 (31%), Gaps = 17/239 (7%)

Query: 38  VDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSK 97
           +D    + +A  K   A    +G   E+      +    + +      +      K  ++
Sbjct: 62  IDGDQIIDIAKRKGADAIIPGYGFLSENSNFARDVASAGLAFVGPSPESIEAFGLKHTAR 121

Query: 98  QVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153
           ++ +  GVP+ P     +      +     +  P ++K   GG  +G++    ++ +   
Sbjct: 122 ELATKAGVPIVPGSQGLVTSEDEAVKIAQSLGFPVMLKATAGGGGMGLLTCNTEKEVRES 181

Query: 154 LLQ-----SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS 208
                    + + +    +   Y     +   V G+       I   +        K   
Sbjct: 182 FQTVQSRGEALFKNAGLFIERYYPSSHHIEVQVFGNGQGKAISIGERECSIQRRHQK--- 238

Query: 209 LNSTHVLPAKI---PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
                  P+       ++ K +   A    ++I        ++L D  S K F+LE+N 
Sbjct: 239 --VIEECPSPFVTRNPELRKGLCDAAVRLAESIDYGSAGTIEYLVDDESGKFFFLEMNT 295


>gi|258623841|ref|ZP_05718795.1| carbamoyl-phosphate synthase large subunit [Vibrio mimicus VM603]
 gi|258583830|gb|EEW08625.1| carbamoyl-phosphate synthase large subunit [Vibrio mimicus VM603]
          Length = 1076

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 34/197 (17%), Positives = 77/197 (39%), Gaps = 10/197 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           LE   +P   +   A   + D+ R +Q V   G+    +  V      ++    I  P V
Sbjct: 653 LEAAGVPVIGTSPDAIDRAEDRERFQQAVQRLGLKQPDNATVTAIEQAIEKSREIGFPLV 712

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  +Q +     ++ S ++   +L+++++ D  E+    + D    
Sbjct: 713 VRPSYVLGGRAMEIVYDEQDLRRYFNEAVSVSNESPVLLDRFLDDATEVDVDAICDGERV 772

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           V    +   +    +    S +S   LPA  +  +I  +++         +G RG+    
Sbjct: 773 VIGGIMEHIE----QAGVHSGDSACSLPAYTLSQEIQDKMREQVEKLAFELGVRGLMNIQ 828

Query: 248 FLFDPLSRKVFWLEINV 264
           F       +V+ +E+N 
Sbjct: 829 FAV--KDNEVYLIEVNP 843



 Score = 57.1 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 44/278 (15%), Positives = 95/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D +              V  ++   +PD    
Sbjct: 29  SGVQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAILP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV--PVCPS 110
            + G    +  +      +L    +    +   A   + D+ R  + + S G+  P   +
Sbjct: 89  TMGGQTALNCALALEKHGVLAEFGVEMIGATADAIDKAEDRSRFDKAMKSIGLECPRADT 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                       ++  P +I+P       G  +    +       +    +  ++LLI++
Sbjct: 149 AKSMEEAYKVLDMVGFPCIIRPSFTMGGSGGGIAYNREEFEEICTRGLDLSPTNELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + + +   A+   D           +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCAIENFDPMGIHT----GDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P   ++  +E+N 
Sbjct: 265 RNASLAVLREIGVETGGSNVQFGINPKDGRMVIIEMNP 302


>gi|195122835|ref|XP_002005916.1| GI20741 [Drosophila mojavensis]
 gi|193910984|gb|EDW09851.1| GI20741 [Drosophila mojavensis]
          Length = 1197

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/205 (14%), Positives = 77/205 (37%), Gaps = 17/205 (8%)

Query: 69  QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLI 124
           QA+++   + +            DK+ ++      GVP+ P     +      +      
Sbjct: 131 QAVID-AGLRFIGPSPKVVQNMGDKVAARIAAIEAGVPIVPGTDGPVTSKEEALAFCQKH 189

Query: 125 SPPYVIKPLKGGSSLGIIVI----KKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTC 179
             P + K   GG   G+ V+    + +++      ++ +      + IE++++    +  
Sbjct: 190 GLPVIFKAAYGGGGRGMRVVRKMEEVEENFERASSEAKAAFGNGAMFIEKFIERPRHIEV 249

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAI 238
            ++GD + +V  +           ++        + PA ++P++   ++   A    + +
Sbjct: 250 QLLGDKAGNVVHLYE-----RDCSVQRRHQKVVEIAPAPRLPVETRDKMTEAAVRLAKHV 304

Query: 239 GCRGISRSDFLFDPLSRKVFWLEIN 263
           G       +FL D      +++E+N
Sbjct: 305 GYENAGTVEFLCDESGN-FYFIEVN 328


>gi|229514020|ref|ZP_04403482.1| carbamoyl-phosphate synthase large chain [Vibrio cholerae TMA 21]
 gi|229524376|ref|ZP_04413781.1| carbamoyl-phosphate synthase large chain [Vibrio cholerae bv.
           albensis VL426]
 gi|254285956|ref|ZP_04960917.1| carbamoyl-phosphate synthase, large subunit [Vibrio cholerae
           AM-19226]
 gi|150423866|gb|EDN15806.1| carbamoyl-phosphate synthase, large subunit [Vibrio cholerae
           AM-19226]
 gi|229337957|gb|EEO02974.1| carbamoyl-phosphate synthase large chain [Vibrio cholerae bv.
           albensis VL426]
 gi|229349201|gb|EEO14158.1| carbamoyl-phosphate synthase large chain [Vibrio cholerae TMA 21]
          Length = 1076

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 34/197 (17%), Positives = 76/197 (38%), Gaps = 10/197 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH--LISPPYV 129
           LE   +P   +   A   + D+ R +Q V   G+    +  V       +    I  P V
Sbjct: 653 LEAAGVPVIGTSPDAIDRAEDRERFQQAVQRLGLKQPDNATVTAIEQAVEKSREIGFPLV 712

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  +Q +     ++ S ++   +L+++++ D  E+    + D    
Sbjct: 713 VRPSYVLGGRAMEIVYDEQDLRRYFNEAVSVSNESPVLLDRFLDDATEVDVDAICDGERV 772

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           V    +   +    +    S +S   LPA  +  +I  +++         +G RG+    
Sbjct: 773 VIGGIMEHIE----QAGVHSGDSACSLPAYTLSQEIQDKMREQVEKLAFELGVRGLMNIQ 828

Query: 248 FLFDPLSRKVFWLEINV 264
           F       +V+ +E+N 
Sbjct: 829 FAV--KDNEVYLIEVNP 843



 Score = 59.4 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 44/278 (15%), Positives = 95/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D +              V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAILP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV--PVCPS 110
            + G    +  +      +L    +    +   A   + D+ R  + + S G+  P   +
Sbjct: 89  TMGGQTALNCALALEKHGVLAEFGVEMIGATADAIDKAEDRSRFDKAMKSIGLECPRADT 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                       ++  P +I+P       G  +    +       +    +  ++LLI++
Sbjct: 149 AKSMEEAYKVLDMVGFPCIIRPSFTMGGSGGGIAYNREEFEEICTRGLDLSPTNELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + + +   A+   D           +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCAIENFDPMGIHT----GDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P   ++  +E+N 
Sbjct: 265 RNASLAVLREIGVETGGSNVQFGINPKDGRMVIIEMNP 302


>gi|170727565|ref|YP_001761591.1| carbamoyl-phosphate synthase L chain ATP-binding [Shewanella woodyi
           ATCC 51908]
 gi|169812912|gb|ACA87496.1| Carbamoyl-phosphate synthase L chain ATP-binding [Shewanella woodyi
           ATCC 51908]
          Length = 709

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 81/221 (36%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+     + E  +I +      A      K  +K+++ +  VP+ P    
Sbjct: 92  AIHPGYGFLSENADFARLCEQSDIAFVGPSAAAIDSMGSKSAAKEIMGAAKVPLVPGYHG 151

Query: 114 NRFT----MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
           +       +     +  P +IK   GG   G+ +++ +  +   +  +          D+
Sbjct: 152 DEQEDALLVSEAKKMGFPLLIKAAFGGGGKGMRIVENETEVLDAIHSARREAISSFGNDK 211

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           LL+E+Y+     +   V  D   +   ++           K          PA  +  ++
Sbjct: 212 LLMERYLRQPRHVEVQVFADNHGNCIYLSDRDCSIQRRHQK-----VVEEAPAPGLSDEL 266

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             ++   A  A +AI  +G    +FL D      +++E+N 
Sbjct: 267 RVKMGEAAVAAAKAIDYQGAGTVEFLLDT-DNSFYFMEMNT 306


>gi|89902121|ref|YP_524592.1| acetyl-CoA carboxylase, biotin carboxylase [Rhodoferax
           ferrireducens T118]
 gi|89346858|gb|ABD71061.1| acetyl-CoA carboxylase, biotin carboxylase [Rhodoferax
           ferrireducens T118]
          Length = 449

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 34/225 (15%), Positives = 78/225 (34%), Gaps = 27/225 (12%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+      +E     +      +  +  DK+ +KQ +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAERVEKSGFQFIGPTPESIRMMGDKVSAKQAMIKAGVPCVPGSEG 136

Query: 111 ------ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSW 160
                 + V R        +  P +IK   GG   G+ V+  + ++   +     ++ + 
Sbjct: 137 ELPDDPVQVRR----IAKAVGYPVIIKAAGGGGGRGMRVVHTEAALLNAVTMTKAEAGAA 192

Query: 161 NHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI 219
                + +E+++ +   +   ++ D   +   +            K             I
Sbjct: 193 FGNPAVYLEKFLQNPRHIEIQILADKYRNAVYLGERDCSMQRRHQKVL----EEAPAPGI 248

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              + + +      A + IG RG    +FL+     + +++E+N 
Sbjct: 249 ARKLIERLGDRCVSACKKIGYRGAGTFEFLY--EDGEFYFIEMNT 291


>gi|26522954|dbj|BAC44871.1| methylcrotonoyl-Coenzyme A carboxylase 1 (alpha) [Pagrus major]
 gi|27877105|dbj|BAC55878.1| 3-methylcrotonyl CoA carboxylase biotin containing subunit [Pagrus
           major]
          Length = 717

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 81/221 (36%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H  +G   E+       +   + +      A      K  SK ++S+ GVP+      
Sbjct: 113 AVHPGYGFLSENTEFAEACKQEGVIFIGPPSSAIRDMGIKSTSKHIMSAAGVPIIGGYHG 172

Query: 113 ---VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD----QSIPLDLLQSSSWNHGDQ 165
               N         I  P +IK ++GG   G+ + + D    + +     ++    + D 
Sbjct: 173 EDQSNERLQAEAAKIGYPVMIKAVRGGGGKGMRIARSDSDFLEQLESARREARKSFNDDV 232

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDI 223
           +L+E++V D   +   V GD   +   +           ++          P   I  ++
Sbjct: 233 MLVEKFVEDPRHVEAQVFGDMHGNAVYL-----FERDCSVQRRHQKIIEEAPGPGISPEV 287

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +++   A  A +A+   G    +F+ D      +++E+N 
Sbjct: 288 RRKLGEAAVKAAKAVNYVGAGTVEFIMDAQHN-FYFMEMNT 327


>gi|300939445|ref|ZP_07154107.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli MS
           21-1]
 gi|300455666|gb|EFK19159.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli MS
           21-1]
          Length = 1073

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 97/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D +              V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRNIIEKERPDAVLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +    Q +LE   +    +   A   + D+ R    +   G+    S +
Sbjct: 89  TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGI 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     +     +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHSMEEALAVAAEVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + +   +   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIEN----FDAMGIHTGDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RNASMAVLREIGVETGGSNVQFAVNPKNGRLIVIEMNP 302



 Score = 60.5 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 29/197 (14%), Positives = 74/197 (37%), Gaps = 10/197 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           LE   +P   +   A   + D+ R +  V    +    +  V      ++    I  P V
Sbjct: 654 LEAAGVPVIGTSPDAIDRAEDRERFQHAVERLKLKQPANATVTTIEMAVEKAKEIGYPLV 713

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  +  +      + S ++   +L++ ++ D +E+    + D  + 
Sbjct: 714 VRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDDAVEVDVDAICDGEMV 773

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           +    +   +    +    S +S   LPA  +  +I   +++        +  RG+    
Sbjct: 774 LIGGIMEHIE----QAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRGLMNVQ 829

Query: 248 FLFDPLSRKVFWLEINV 264
           F     + +V+ +E+N 
Sbjct: 830 FAV--KNNEVYLIEVNP 844


>gi|225076140|ref|ZP_03719339.1| hypothetical protein NEIFLAOT_01172 [Neisseria flavescens
           NRL30031/H210]
 gi|224952483|gb|EEG33692.1| hypothetical protein NEIFLAOT_01172 [Neisseria flavescens
           NRL30031/H210]
          Length = 453

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 39/217 (17%), Positives = 78/217 (35%), Gaps = 18/217 (8%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---SILVNR 115
           +G   E+      +E     +         L  DK+ +K  +   GVP  P     L + 
Sbjct: 82  YGFLAENANFAEQVEQSGFVFIGPKADTIRLMGDKVSAKHAMIEAGVPCVPGSEGALPDD 141

Query: 116 FT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGDQLLIE 169
               +     +  P +IK   GG   G+ V++K + +   +     ++ +      + +E
Sbjct: 142 GDEILKIADKVGYPVIIKASGGGGGRGMRVVEKKEDLLQSVEMTKAEAGAAFGNPMVYME 201

Query: 170 QYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
           +Y+     +   V+ D   +   +A           K          PA  I  +   ++
Sbjct: 202 RYLQRPRHVEIQVIADEHGNAIYLAERDCSMQRRHQK-----VIEEAPAPFITEEERAKI 256

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +    A + IG RG    +FL+     + F++E+N 
Sbjct: 257 GKACADACKRIGYRGAGTFEFLY--EDGEFFFIEMNT 291


>gi|198412161|ref|XP_002128368.1| PREDICTED: similar to MGC81895 protein [Ciona intestinalis]
          Length = 667

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 80/221 (36%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+     +     + +      A      K  SK+++S+  VP+      
Sbjct: 57  AIHPGYGFLSENAEFAELCSSNGVIFVGPPPSAIRDMGIKSTSKRIMSAANVPIIEGYHG 116

Query: 114 NRFT----MDSQHLISPPYVIKPLKGGSSLGIIVIKKD----QSIPLDLLQSSSWNHGDQ 165
           +  +    ++    I  P +IK ++GG   G+ +        + +     ++      D 
Sbjct: 117 DEQSDSRLLEEADRIGFPVMIKAVRGGGGKGMRIATSRDVFLEQLSSARSEAIKSFGDDV 176

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           +L+E+YVD    +   V GD   +               ++          PA  I L  
Sbjct: 177 MLVEKYVDRPRHVEVQVFGDHHGNAV-----HLFERDCSVQRRHQKVIEESPAPGISLRT 231

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              +   A  A +A+G  G    +F+ DP     +++E+N 
Sbjct: 232 RTNLGEAAVRAARAVGYVGAGTVEFVMDPQQN-FYFMEMNT 271


>gi|124515275|gb|EAY56785.1| Carbamoyl-phosphate synthase, large subunit [Leptospirillum
           rubarum]
          Length = 1080

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 50/278 (17%), Positives = 100/278 (35%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G++VS +         D               +V  VL   +PD    
Sbjct: 29  SGTQAVRALKEEGYRVSLVNSNPATIMTDPQLSDATYMVPLTAEAVTRVLEKERPDAILP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  V    + +L+ L I    + +     + D+   K+ + S G+    S +
Sbjct: 89  TMGGQTALNLAVELSDRGVLKRLGIELVGTSVETIRKAEDRGLFKKAMESIGLASPRSFV 148

Query: 113 VNRFTMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +        L  +S P +I+P       G  V+   +     +      +   ++L+E+
Sbjct: 149 AHSMAEARSALGELSFPIMIRPSFTLGGSGGGVVFNLEEFEQRVQVGLEMSPVREVLVEE 208

Query: 171 YVDG-IELTCGVMGDASL-DVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEV 227
            + G  E    V+ D +   +   ++   D           +S  V P   +P   Y+ +
Sbjct: 209 SLLGWKEFELEVVRDKADNAIIVCSIENLDPMGVHT----GDSITVAPQMTLPDREYQYL 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + +G   G S   F   P + +V  +E+N 
Sbjct: 265 RNASIAILREVGVETGGSNVQFAVHPETGRVVVIEMNP 302



 Score = 63.6 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 47/229 (20%), Positives = 91/229 (39%), Gaps = 12/229 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--FTMDSQHLISPPYV 129
           L    IP   +    + L+ D+ R + V+   G+    S L +    T      I  P +
Sbjct: 654 LAEAGIPILGTSPDMTDLAEDRERFRAVIEKLGLRQPASALAHTIGETAGLVREIGFPVL 713

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           ++P        + V+  ++ +   L +  S +    LLI+ ++ G      V  DA  D 
Sbjct: 714 VRPSYVLGGEAMEVLFDEEGLEEYLKRVQSLDFRFPLLIDSFI-GQATEVDV--DALCDQ 770

Query: 190 TEIAVPKSDFYSYELK-YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           TE+ V     +  E   +S  +S  + P  +   +  E++R       A+G RG+    F
Sbjct: 771 TEVFVAGILEHIEEAGIHSGDSSCFLPPMSLSTGVLSEIRRQTRQLGLALGVRGLMNIQF 830

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
                +  V+ LE+N +   T     P ++   G    ++ + ++  A+
Sbjct: 831 AV--QNETVYVLEVNPRASRT----VPFVSKSIGVPLAKMAMRILLGAT 873


>gi|187927216|ref|YP_001897703.1| Carbamoyl-phosphate synthase L chain ATP-binding [Ralstonia
           pickettii 12J]
 gi|309780085|ref|ZP_07674837.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Ralstonia sp.
           5_7_47FAA]
 gi|187724106|gb|ACD25271.1| Carbamoyl-phosphate synthase L chain ATP-binding [Ralstonia
           pickettii 12J]
 gi|308921117|gb|EFP66762.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Ralstonia sp.
           5_7_47FAA]
          Length = 664

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 76/220 (34%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E            + +      A     +K  +K+++ + GVP  P    
Sbjct: 83  AVHPGYGFLAESDAFAGACADAGLVFIGPPAGAIRAMGNKAGAKRLMEAAGVPCVPGYQG 142

Query: 114 NRFTM----DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGD 164
              +     D    I  P +IK   GG   G+  + + ++    L        +++  G+
Sbjct: 143 EDQSATRMADEAARIGYPVMIKAAAGGGGRGMRRVDRPEAFAAALQSARSEAENAFGSGE 202

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
            +L +  V+   +   V  DA  +V  +            K             +  ++ 
Sbjct: 203 LILEKAIVEPRHIEIQVFADAHGNVVHLGERDCSVQRRHQK----VIEESPSPAVSPELR 258

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +  ++  A +AIG  G    +FL  P     +++E+N 
Sbjct: 259 ARMGAVSVAAARAIGYVGAGTLEFLLAP-DGAFYFMEMNT 297


>gi|104783795|ref|YP_610293.1| acetyl-CoA carboxylase biotin carboxylase subunit [Pseudomonas
           entomophila L48]
 gi|95112782|emb|CAK17510.1| biotin carboxylase (A subunit of acetyl-CoA carboxylase)
           [Pseudomonas entomophila L48]
          Length = 451

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 77/222 (34%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         L  DK+ +K  +   GVP  P    
Sbjct: 80  AIHPGYGFLAENADFAEQVEKSGFAFIGPKADTIRLMGDKVSAKDAMIKSGVPTVPGSDG 139

Query: 112 LVNRFTMDS---QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGD 164
            +      +      +  P +IK   GG   G+ V+ K++ +         ++ +     
Sbjct: 140 PLPEDEEVALAIARDVGYPVIIKAAGGGGGRGMRVVHKEEDLIESAKLTRTEAGAAFGNP 199

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+++     +   V+ D   +               L+          PA  I   
Sbjct: 200 MVYLEKFLTNPRHVEVQVLSDGQGNAV-----HLGDRDCSLQRRHQKVLEEAPAPGIDEK 254

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +EV +    A   IG RG    +FL+   + + +++E+N 
Sbjct: 255 ARQEVFKRCVDACIEIGYRGAGTFEFLY--ENGRFYFIEMNT 294


>gi|121727064|ref|ZP_01680255.1| acetyl-CoA carboxylase, biotin carboxylase [Vibrio cholerae V52]
 gi|121630575|gb|EAX62965.1| acetyl-CoA carboxylase, biotin carboxylase [Vibrio cholerae V52]
          Length = 408

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 82/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         L  DK+ +   +   GVP  P    
Sbjct: 38  AIHPGYGFLSENADFAEQVERSGFIFVGPRAETIRLMGDKVSAINAMKKAGVPCVPGSDG 97

Query: 112 -LVNRFTMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
            L N    +  H   I  P +IK   GG   G+ V++ +  +   +     ++ +  + D
Sbjct: 98  PLDNDEAKNKAHAKRIGYPVIIKASGGGGGRGMRVVRNEAELTKSIQMTRAEAKAAFNND 157

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E++++    +   V+ D   +   +A           K          PA  I  +
Sbjct: 158 MVYMEKFLENPRHVEVQVIADGQGNAIHLAERDCSMQRRHQK-----VVEEAPAPGITEE 212

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + K +      A   IG RG    +FL+   + + +++E+N 
Sbjct: 213 MRKFIGERCTRACIEIGYRGAGTFEFLY--ENGEFYFIEMNT 252


>gi|322692970|gb|EFY84850.1| acetyl-/propionyl-coenzyme A carboxylase alpha chain [Metarhizium
           acridum CQMa 102]
          Length = 1238

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 32/235 (13%), Positives = 77/235 (32%), Gaps = 14/235 (5%)

Query: 39  DRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQ 98
             ++  +      D  F   +G   E+      +   +I +      +      K  ++ 
Sbjct: 72  GEAILEICKKTGVDAVFPG-YGFLSENADFANAVSSADIIFVGPSSASIKAMGLKHEARA 130

Query: 99  VVSSCGVPVCPSILVNRFTMD---SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
           +  +  VPV P   +    ++   +   +  P ++K   GG  +G+     +  +     
Sbjct: 131 IAEAANVPVVPGTQLLSSAVEVVKAARNLGFPVMLKATGGGGGMGLQACNTELEVEKAFA 190

Query: 156 QSSS-----WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLN 210
              S     + +    L + Y     +   V+G+  + V           S + +Y  + 
Sbjct: 191 VVESRASKLFQNSGVYLEKYYPRSRHIEVQVVGNGEIVVAF----GERECSLQRRYQKVI 246

Query: 211 STHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
                P  +    + + +   A      +  + +   +FL D  +   F+LE+N 
Sbjct: 247 EECPSPFVERHPGLRERMLEAATNYAAQLKYKSVGTVEFLVDDETANFFFLEMNT 301


>gi|261210420|ref|ZP_05924714.1| biotin carboxylase of acetyl-CoA carboxylase [Vibrio sp. RC341]
 gi|260840478|gb|EEX67044.1| biotin carboxylase of acetyl-CoA carboxylase [Vibrio sp. RC341]
          Length = 447

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 81/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         L  DK+ +   +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAEQVERSGFIFVGPKAETIRLMGDKVSAINAMKKAGVPCVPGSDG 136

Query: 112 -LVNRFTMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
            L N    +  H   I  P +IK   GG   G+ V++ +  +   +     ++ +  + D
Sbjct: 137 PLDNDEAKNKAHAKRIGYPVIIKASGGGGGRGMRVVRNEAELTKSIQMTRAEAKAAFNND 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E++++    +   V+ D   +   +            K          PA  I  D
Sbjct: 197 MVYMEKFLENPRHVEVQVIADGQGNAIHLGERDCSMQRRHQK-----VVEEAPAPGITED 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + K +      A   IG RG    +FL+   + + +++E+N 
Sbjct: 252 LRKFIGERCTRACIEIGYRGAGTFEFLY--ENGEFYFIEMNT 291


>gi|254773969|ref|ZP_05215485.1| carbamoyl-phosphate synthase L subunit [Mycobacterium avium subsp.
           avium ATCC 25291]
          Length = 663

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 42/218 (19%), Positives = 82/218 (37%), Gaps = 22/218 (10%)

Query: 58  LHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
           LH  +G   E+      +    + +    + A      K+ SK+++++ GVPV     ++
Sbjct: 76  LHPGYGFLSENADFATAVADAGLTWVGPPVDAVRAMGSKIESKKLMAAAGVPV-----LD 130

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK----DQSIPLDLLQSSSWNHGDQLLIEQ 170
               D+      P ++K   GG   G+ V+ +       +     ++ S      +  E+
Sbjct: 131 ELDPDTVTEAQLPVLVKASAGGGGRGMRVVHELSALRGEVEAARREAQSAFGDPTVFCER 190

Query: 171 YV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI---PLDIYKE 226
           Y+  G  +   V+ DA   V  +   +        K          P+ +      +  +
Sbjct: 191 YLPTGHHVEVQVLADAHGTVWAVGERECSIQRRHQK-----IIEEAPSPLVERTPGMRAK 245

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +   A LA  AIG  G    +FL D    + ++LE+N 
Sbjct: 246 LFEAARLAAGAIGYTGAGTVEFLAD-DDGEFYFLEMNT 282


>gi|253572320|ref|ZP_04849723.1| biotin carboxylase [Bacteroides sp. 1_1_6]
 gi|251838095|gb|EES66183.1| biotin carboxylase [Bacteroides sp. 1_1_6]
          Length = 503

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 81/220 (36%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       E   + +   G    A    K  +++++   G+P+ P    
Sbjct: 76  AIHPGYGFLSENADFARRCEEEGVIFIGPGADIIAKMGIKTEARKIMREAGLPIVPGTET 135

Query: 114 N----RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN----HGDQ 165
                         +  P ++K L GG   G+ +++ ++     L  S S        D 
Sbjct: 136 PVQGIEEVKKVAKEVGYPIMLKALAGGGGKGMRLVRSEEEAETALRLSQSEAGTSFGNDA 195

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+Y++    +   +MGD   +V  +   +        K             +  +  
Sbjct: 196 VYIEKYIENPHHIEVQIMGDKYGNVVHLGERECSIQRRNQK----VIEESPSPFVKDETR 251

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K++ ++A  A + IG       +F+ D   +  ++LE+N 
Sbjct: 252 KKMLKVAVEACKRIGYYSAGTLEFMMDK-DQNFYFLEMNT 290


>gi|238922175|ref|YP_002935689.1| carbamoyl-phosphate synthase [Eubacterium eligens ATCC 27750]
 gi|238873847|gb|ACR73555.1| carbamoyl-phosphate synthase [Eubacterium eligens ATCC 27750]
          Length = 1072

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 34/225 (15%), Positives = 85/225 (37%), Gaps = 13/225 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           L  + +P   +       + D+    +++    +P      V      + + + +  P +
Sbjct: 647 LMKMGVPILGTKAEDVDAAEDRELFDEILEQTQIPRAKGQTVFTVDEALKAANELGYPVL 706

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           ++P       G+ +   D+ +   +   +       +L+++Y+ G E+    + D     
Sbjct: 707 VRPSYVLGGQGMQIAVSDEDVVEFMNIINRIKQDHPILVDKYLMGKEIEVDAVCDGQ--- 763

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
            +I +P    +       S +S  V PAK I   I   ++       +A+  +G+    F
Sbjct: 764 -DILIPGIMEHIERAGIHSGDSISVYPAKSISPKIVDMIEDYTGRLARALHVKGMINIQF 822

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    + +V+ +E+N +   T     P ++   G    +L   ++
Sbjct: 823 IV--YNDQVYVIEVNPRSSRT----VPYISKVTGIPIVKLATQVI 861



 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 50/287 (17%), Positives = 105/287 (36%), Gaps = 35/287 (12%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI-----------DVD----------RSVGLV 45
           G ++E + +   G     +L++ G +V  +           D+            ++  +
Sbjct: 21  GQAAEFDYA---GTQACRSLKEEGIEVVLVNSNPATIMTDKDIADEVYIEPLTVEALKQI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   KPD     L G  G +  ++      LE   +    +  L    + D++  K+ + 
Sbjct: 78  ILKEKPDSILPTLGGQAGLNLAMEIAETGFLEEHNVKLIGTTALTIKKAEDRLMFKETME 137

Query: 102 SCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G P  PS++VN           I  P V++P       G  +    Q +   L     
Sbjct: 138 KIGEPCAPSLVVNNVEDGEAFAAKIGYPVVLRPAYTLGGSGGGIANNVQELREILENGLR 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   ++L+E+ + G  E+   VM D++     I   ++      +   + +S  V P++
Sbjct: 198 LSRVGEVLVERCIAGWKEIEYEVMRDSNGTCITICNMEN---IDPVGVHTGDSIVVAPSQ 254

Query: 219 -IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +    Y+ ++  A      +G  G     +   P S +   +E+N 
Sbjct: 255 TLSDKEYQMLRTSALRIIDELGITGGCNVQYALHPDSFEYCVIEVNP 301


>gi|126657692|ref|ZP_01728846.1| phosphoribosylaminoimidazole carboxylase ATPase subunit [Cyanothece
           sp. CCY0110]
 gi|126620909|gb|EAZ91624.1| phosphoribosylaminoimidazole carboxylase ATPase subunit [Cyanothece
           sp. CCY0110]
          Length = 375

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 50/241 (20%), Positives = 89/241 (36%), Gaps = 34/241 (14%)

Query: 31  FKVSQIDVDRSVGLVLAHLKPDLA-----FNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
            +V    +D +        K D+      F  L         +Q  LE   I +      
Sbjct: 45  HEVILAPIDDANATQKLAEKCDIITFENEFINLE-------ALQK-LESKGISF---RPK 93

Query: 86  ASAL--SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGG-SSLGII 142
            S L   +DK + +  + +  +PV     +      S +    P VIK  + G    G  
Sbjct: 94  LSTLYPLLDKYKQRSYLKNINIPVPKFTTLEEL---SSNHFDFPLVIKARRHGYDGQGTF 150

Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYS 201
           +IK  + +   L Q++       L++E+Y+    EL   V  +A  ++   +V +    +
Sbjct: 151 IIKNTEELNPVLKQAN----NRLLMVEEYIRFQQELALMVARNAKGEIVTYSVVE----T 202

Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
           Y+ +        + PA I   + KE Q++A      +   GI   +F   P   K+   E
Sbjct: 203 YQKEQVCHWV--IAPANISETVQKEAQKIAEHLVTELDVIGIFGIEFFLTP-EGKLLVNE 259

Query: 262 I 262
           I
Sbjct: 260 I 260


>gi|319639464|ref|ZP_07994213.1| acetyl-CoA carboxylase [Neisseria mucosa C102]
 gi|317399230|gb|EFV79902.1| acetyl-CoA carboxylase [Neisseria mucosa C102]
          Length = 453

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 39/217 (17%), Positives = 78/217 (35%), Gaps = 18/217 (8%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---SILVNR 115
           +G   E+      +E     +         L  DK+ +K  +   GVP  P     L + 
Sbjct: 82  YGFLAENANFAEQVEQSGFVFIGPKADTIRLMGDKVSAKHAMIEAGVPCVPGSDGALPDD 141

Query: 116 FT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGDQLLIE 169
               +     +  P +IK   GG   G+ V++K + +   +     ++ +      + +E
Sbjct: 142 GEEILKIADKVGYPVIIKASGGGGGRGMRVVEKKEDLLQSVEMTKAEAGAAFGNPMVYME 201

Query: 170 QYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
           +Y+     +   V+ D   +   +A           K          PA  I  +   ++
Sbjct: 202 RYLQRPRHVEIQVIADEHGNAIYLAERDCSMQRRHQK-----VIEEAPAPFITEEERAKI 256

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +    A + IG RG    +FL+     + F++E+N 
Sbjct: 257 GKACADACKRIGYRGAGTFEFLY--EDGEFFFIEMNT 291


>gi|262170662|ref|ZP_06038340.1| carbamoyl-phosphate synthase large chain [Vibrio mimicus MB-451]
 gi|261891738|gb|EEY37724.1| carbamoyl-phosphate synthase large chain [Vibrio mimicus MB-451]
          Length = 1076

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 34/197 (17%), Positives = 77/197 (39%), Gaps = 10/197 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           LE   +P   +   A   + D+ R +Q V   G+    +  V      ++    I  P V
Sbjct: 653 LEAAGVPVIGTSPDAIDRAEDRERFQQAVQRLGLKQPDNATVTAIEQAIEKSREIGFPLV 712

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  +Q +     ++ S ++   +L+++++ D  E+    + D    
Sbjct: 713 VRPSYVLGGRAMEIVYDEQDLRRYFNEAVSVSNESPVLLDRFLDDATEVDVDAICDGERV 772

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           V    +   +    +    S +S   LPA  +  +I  +++         +G RG+    
Sbjct: 773 VIGGIMEHIE----QAGVHSGDSACSLPAYTLSQEIQDKMREQVEKLAFELGVRGLMNIQ 828

Query: 248 FLFDPLSRKVFWLEINV 264
           F       +V+ +E+N 
Sbjct: 829 FAV--KDNEVYLIEVNP 843



 Score = 59.4 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 44/278 (15%), Positives = 95/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D +              V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAILP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV--PVCPS 110
            + G    +  +      +L    +    +   A   + D+ R  + + S G+  P   +
Sbjct: 89  TMGGQTALNCALALEKHGVLAEFGVEMIGATADAIDKAEDRSRFDKAMKSIGLECPRADT 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                       ++  P +I+P       G  +    +       +    +  ++LLI++
Sbjct: 149 AKSMEEAYKVLDMVGFPCIIRPSFTMGGSGGGIAYNREEFEEICTRGLDLSPTNELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + + +   A+   D           +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCAIENFDPMGIHT----GDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P   ++  +E+N 
Sbjct: 265 RNASLAVLREIGVETGGSNVQFGINPKDGRMVIIEMNP 302


>gi|271967626|ref|YP_003341822.1| carbamoyl-phosphate synthase L chain ATP- binding protein
           [Streptosporangium roseum DSM 43021]
 gi|270510801|gb|ACZ89079.1| carbamoyl-phosphate synthase L chain ATP- binding protein
           [Streptosporangium roseum DSM 43021]
          Length = 667

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 39/233 (16%), Positives = 79/233 (33%), Gaps = 32/233 (13%)

Query: 57  VLHGNFG---EDGLV-QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            +H  +G   E+    +A+L+   + +      A A    K+ +K +++  GVPV P   
Sbjct: 77  AVHPGYGFLSENAAFARAVLD-AGLTWVGPSPEAIAAMGSKIGAKALMAEAGVPVLPGFT 135

Query: 113 VNRFTMDSQHLISP----------------PYVIKPLKGGSSLGIIVIKKDQSIPLDLL- 155
               +  ++                     P ++K   GG   G+ +++    +P  +  
Sbjct: 136 AAPGSSAAELEQGLAGMSAPAGGSAPSRRTPLLVKASAGGGGRGMRIVEPTGDLPGAVES 195

Query: 156 ---QSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
              ++ S      + +E  + D   +   ++ D    V  +   +        K      
Sbjct: 196 ARREAESAFGDGTVFVEPLLEDARHIEVQILADRHGTVWTLGERECSIQRRHQK----VI 251

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
                  I   +   +   A  A +AIG  G    +FL       V +LE+N 
Sbjct: 252 EETPSPAISPAMRARLCDAAVRAAEAIGYAGAGTVEFLV--KDDTVAFLEMNT 302


>gi|160890469|ref|ZP_02071472.1| hypothetical protein BACUNI_02911 [Bacteroides uniformis ATCC 8492]
 gi|156860201|gb|EDO53632.1| hypothetical protein BACUNI_02911 [Bacteroides uniformis ATCC 8492]
          Length = 503

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 84/220 (38%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       +   I +            DK+ +++ + + GVPV P    
Sbjct: 77  AIHPGYGFLSENSEFARRCKEEGIIFIGPAAETMEAMGDKIAARKRMIAAGVPVVPGTEQ 136

Query: 114 NRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
              + +      + I  P ++K   GG   G+ +I  +  +      + S +      D 
Sbjct: 137 PLQSAEEAVRICNEIGYPVMLKASMGGGGKGMRLIHNESEVVEAYNTARSESMSSFGDDT 196

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E++V+    +   ++GD   +V  +   +        K             +  ++ 
Sbjct: 197 VYLEKFVEEPHHIEFQILGDNHGNVIHLFDRECSVQRRNQK----VVEESPSPFLTPELR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +E+   A  A +A+   G    +FL D  +R+ ++LE+N 
Sbjct: 253 REMGEKAVAAAKAVNYSGAGTIEFLVDK-NRRFYFLEMNT 291


>gi|116747460|ref|YP_844147.1| carbamoyl phosphate synthase large subunit [Syntrophobacter
           fumaroxidans MPOB]
 gi|116696524|gb|ABK15712.1| carbamoyl-phosphate synthase large subunit [Syntrophobacter
           fumaroxidans MPOB]
          Length = 1080

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 47/278 (16%), Positives = 93/278 (33%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+++  I         D +             +V  V+   +PD    
Sbjct: 29  SGTQACKALREEGYEIVLINSNPATIMTDPETADRTYIEPITPEAVAKVIERERPDALLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G    +  V+     +LE   +    + +     + D+   +  +   G+ V  S +
Sbjct: 89  TLGGQTALNVAVRVAETGVLERFGVALIGASVEVIKKAEDRELFRDAMKRIGLRVPASGI 148

Query: 113 VNRFTMDS--QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
               +        I  P +++P       G  V    + +          +    +++E+
Sbjct: 149 ARSMSEVESIAREIGFPIIVRPSFTLGGTGGGVAYNREELKELAQSGLDASFIHTVMLEE 208

Query: 171 YVDG-IELTCGVMGD-ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            V G  E    VM D     V   ++   D           +S  V PA+ +    Y+ +
Sbjct: 209 SVLGWKEFELEVMRDCMDNVVIICSIENMDAMGVHT----GDSITVAPAQTLTDREYQLL 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P   ++  +E+N 
Sbjct: 265 RDASIAILREIGVETGGSNVQFAINPADGEMVVIEMNP 302



 Score = 61.7 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 88/224 (39%), Gaps = 12/224 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           LE        +   A   + D+ R ++++   G+    +      R   ++   I  P V
Sbjct: 655 LEKAGARILGTSPDAIDRAEDRKRFQKLLQKLGLKQPRNATAFTLREAAEAAGRIGYPVV 714

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++     +   +  +   + G  +LI+Q++ D +E+    + D ++ 
Sbjct: 715 VRPSYVLGGRAMEIVFDAAMLESFMKTAVHVSPGHPILIDQFLEDAVEIDVDAISDGTVT 774

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           V    +   +       +S  ++  + P  I   I +E++R   L  + +G  G+    F
Sbjct: 775 VVGGIMEHIEQAGI---HSGDSACVLPPMSISRSIQEEIRRQTRLLAKELGVVGLMNIQF 831

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
                + ++F LE+N +   T     P ++   G+   +L   +
Sbjct: 832 AL--QNGEIFILEVNPRASRT----IPFVSKAIGFPLAKLATRV 869


>gi|262404705|ref|ZP_06081260.1| carbamoyl-phosphate synthase large chain [Vibrio sp. RC586]
 gi|262349737|gb|EEY98875.1| carbamoyl-phosphate synthase large chain [Vibrio sp. RC586]
          Length = 1076

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 34/197 (17%), Positives = 77/197 (39%), Gaps = 10/197 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           LE   +P   +   A   + D+ R +Q V   G+    +  V      ++    I  P V
Sbjct: 653 LEAAGVPVIGTSPDAIDRAEDRERFQQAVQRLGLKQPDNATVTAIEQAIEKSREIGFPLV 712

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  +Q +     ++ S ++   +L+++++ D  E+    + D    
Sbjct: 713 VRPSYVLGGRAMEIVYDEQDLRRYFNEAVSVSNESPVLLDRFLDDATEVDVDAICDGERV 772

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           V    +   +    +    S +S   LPA  +  +I  +++         +G RG+    
Sbjct: 773 VIGGIMEHIE----QAGVHSGDSACSLPAYTLSQEIQDKMREQVEKLAFELGVRGLMNIQ 828

Query: 248 FLFDPLSRKVFWLEINV 264
           F       +V+ +E+N 
Sbjct: 829 FAV--KDNEVYLIEVNP 843



 Score = 59.4 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 44/278 (15%), Positives = 95/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D +              V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAILP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV--PVCPS 110
            + G    +  +      +L    +    +   A   + D+ R  + + S G+  P   +
Sbjct: 89  TMGGQTALNCALALEKHGVLAEFGVEMIGATADAIDKAEDRSRFDKAMKSIGLECPRADT 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                       ++  P +I+P       G  +    +       +    +  ++LLI++
Sbjct: 149 AKSMEEAYKVLDMVGFPCIIRPSFTMGGSGGGIAYNREEFEEICTRGLDLSPTNELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + + +   A+   D           +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCAIENFDPMGIHT----GDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P   ++  +E+N 
Sbjct: 265 RNASLAVLREIGVETGGSNVQFGINPKDGRMVIIEMNP 302


>gi|240277805|gb|EER41313.1| 3-methylcrotonyl-CoA carboxylase biotin-containing subunit
           [Ajellomyces capsulatus H143]
          Length = 1251

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 47/283 (16%), Positives = 86/283 (30%), Gaps = 59/283 (20%)

Query: 13  EVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNV--------------- 57
           E++L  G+  +      G +V+ +  D       A   P  AFN+               
Sbjct: 607 EIALRVGRTASQH----GIRVTTLYTDPDARAQHALSSP-FAFNLGETSAYLDGDRIIEI 661

Query: 58  --------LHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP 106
                   +H  +G   E+           + +      A     DK             
Sbjct: 662 AQKEGCQGIHPGYGFLSENSAFAQKCTQAGLVFIGPPPKAIEAMGDKSM----------- 710

Query: 107 VCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH---- 162
                    F          P +IK +KGG   G+ +    ++    L+ + S       
Sbjct: 711 --------EFLEAEAEKTKFPVLIKAVKGGGGKGMRIASSKETFRDQLISAKSEAMNSFG 762

Query: 163 GDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL 221
            D +L+E+Y+     +   V  D   +   +            K             +P 
Sbjct: 763 DDTMLVEKYITTPRHIEVQVFADKHGNCVALGERDCSIQRRHQKIL----EESPAPHLPE 818

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              K++   A  A  A+G  G    +F+FD  + + F++E+N 
Sbjct: 819 ATRKDIWDKARAAALAVGYEGAGTVEFIFDNDTGEFFFMEMNT 861


>gi|261381307|ref|ZP_05985880.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Neisseria
           subflava NJ9703]
 gi|284795794|gb|EFC51141.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Neisseria
           subflava NJ9703]
          Length = 453

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 39/217 (17%), Positives = 78/217 (35%), Gaps = 18/217 (8%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---SILVNR 115
           +G   E+      +E     +         L  DK+ +K  +   GVP  P     L + 
Sbjct: 82  YGFLAENANFAEQVEQSGFVFIGPKADTIRLMGDKVSAKHAMIEAGVPCVPGSDGALPDD 141

Query: 116 FT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGDQLLIE 169
               +     +  P +IK   GG   G+ V++K + +   +     ++ +      + +E
Sbjct: 142 GEEILKIADKVGYPVIIKASGGGGGRGMRVVEKKEDLLQSVEMTKAEAGAAFGNPMVYME 201

Query: 170 QYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
           +Y+     +   V+ D   +   +A           K          PA  I  +   ++
Sbjct: 202 RYLQRPRHVEIQVIADEHGNAIYLAERDCSMQRRHQK-----VIEEAPAPFITEEERAKI 256

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +    A + IG RG    +FL+     + F++E+N 
Sbjct: 257 GKACADACKRIGYRGAGTFEFLY--EDGEFFFIEMNT 291


>gi|261364175|ref|ZP_05977058.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Neisseria
           mucosa ATCC 25996]
 gi|288567780|gb|EFC89340.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Neisseria
           mucosa ATCC 25996]
          Length = 453

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 39/222 (17%), Positives = 82/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         L  DK+ +K  +   GVP  P    
Sbjct: 77  AIHPGYGFLAENANFAEQVEQSGFIFIGPKAETIRLMGDKVSAKHAMIEAGVPCVPGSDG 136

Query: 112 LVNRFTMD---SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
            ++    +   +   +  P +IK   GG   G+ V++K + +   +     ++ +     
Sbjct: 137 ALSDDPAEILKTADKVGYPVIIKASGGGGGRGMRVVEKKEDLIKSVEMTKAEAGAAFGNP 196

Query: 165 QLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+Y+     +   V+ D   +   +A           K          PA  I   
Sbjct: 197 MVYMERYLQRPRHVEIQVLADEHGNAIYLAERDCSMQRRHQK-----VIEEAPAPFIDEK 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +++ +    A + IG RG    +FL+   + + F++E+N 
Sbjct: 252 AREKIGKACTDACKRIGYRGAGTFEFLY--ENGEFFFIEMNT 291


>gi|87120517|ref|ZP_01076411.1| acetyl-CoA carboxylase [Marinomonas sp. MED121]
 gi|86164160|gb|EAQ65431.1| acetyl-CoA carboxylase [Marinomonas sp. MED121]
          Length = 446

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 35/222 (15%), Positives = 76/222 (34%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         L  DK+ +   +   GVP  P    
Sbjct: 77  AIHPGYGFLAENADFAEQVENSGFAFIGPKAETIRLMGDKVSAIVAMRKAGVPTVPGSNG 136

Query: 112 LVNRFTMDSQHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
            V     + + +   I  P ++K   GG   G+ V+  + S+   +     ++ S+    
Sbjct: 137 PVPSDENECKRIALEIGYPIIVKAAAGGGGRGMRVVHDEDSLLKSISITQSEAGSYFGDS 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+++     +   V+ D   +   +           L+          PA  +  +
Sbjct: 197 TVYMEKFLTNPRHVEVQVLADGQGNAVHLY-----DRDCSLQRRHQKVLEEAPAPHLDPE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
                 +    A   I  RG    +FL+     + +++E+N 
Sbjct: 252 SRAACLQACVDACIEINYRGAGTFEFLY--EDGRFYFIEMNT 291


>gi|86147888|ref|ZP_01066193.1| acetyl-CoA carboxylase [Vibrio sp. MED222]
 gi|218710861|ref|YP_002418482.1| acetyl-CoA carboxylase biotin carboxylase subunit [Vibrio
           splendidus LGP32]
 gi|85834315|gb|EAQ52468.1| acetyl-CoA carboxylase [Vibrio sp. MED222]
 gi|218323880|emb|CAV20241.1| Biotin carboxylase [Vibrio splendidus LGP32]
          Length = 447

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 36/222 (16%), Positives = 82/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      +E     +         +  DK+ +   +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAEQVERSGFIFVGPKAETIRMMGDKVSAITSMKKAGVPCVPGSDG 136

Query: 114 NRFTMDSQHL-----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
                ++++      I  P +IK   GG   G+ V++ ++ +   +     ++ +  + D
Sbjct: 137 PLDDDEAKNKAHAKRIGFPVIIKASGGGGGRGMRVVRTEKELTEAIAMTRAEAKACFNND 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E++++    +   V+ D   +   +            K          PA  I  +
Sbjct: 197 MVYMEKFLENPRHIEVQVLADGQGNAIHLGERDCSMQRRHQK-----VVEEAPAPGITEE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + K +      A   IG RG    +FL+   + + +++E+N 
Sbjct: 252 MRKYIGDRCTRACLEIGYRGAGTFEFLY--ENGEFYFIEMNT 291


>gi|47569514|ref|ZP_00240194.1| carbamoyl-phosphate synthase, large subunit [Bacillus cereus G9241]
 gi|47553843|gb|EAL12214.1| carbamoyl-phosphate synthase, large subunit [Bacillus cereus G9241]
          Length = 1072

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 50/314 (15%), Positives = 114/314 (36%), Gaps = 37/314 (11%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQIDVD---------------------RSVGLV 45
           G ++E + S   G     +L++ G+KV  ++ +                       V  +
Sbjct: 21  GQAAEFDYS---GTQACQSLKEEGYKVILVNSNPATIMTDTATADKVYIEPLTLEFVSRI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   +PD     L G  G +  V+     ILE   +    + + A   + D+   + ++ 
Sbjct: 78  IRKERPDAILPTLGGQTGLNMAVELAKSGILEECGVEILGTKLSAIEQAEDRDLFRSLMQ 137

Query: 102 SCGVPVCPSILVNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
               P+  S +++      +    I  P +++P       G  +   ++ +   +     
Sbjct: 138 ELNEPIPSSTIIHTLEEAHEFVKEIGYPVIVRPAFTMGGTGGGICSNEEELIEIVSGGLK 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   Q L+E+ + G  E+   VM D++ +   I V   +       ++  +        
Sbjct: 198 HSPVTQCLLEKSIAGCKEIEYEVMRDSNDNA--IVVCNMENIDPVGVHTGDSIVVAPSQT 255

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278
           +    Y+ ++  +    +A+G  G        DP S + + +E+N  P ++  S     +
Sbjct: 256 LSDREYQMLRNTSLRIIRALGIEGGCNVQLALDPHSFQYYVIEVN--PRVSRSS--ALAS 311

Query: 279 AYAGYSFRELLLWM 292
              GY   +L   +
Sbjct: 312 KATGYPIAKLAAKI 325



 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 26/221 (11%), Positives = 80/221 (36%), Gaps = 20/221 (9%)

Query: 68  VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLIS 125
           + A LE   +    + +     + D+ + +  ++  G+P             +     I 
Sbjct: 642 LAAKLEAHGVKILGTSLEDLDRAEDRDKFEAALTQLGIPQPVGKTATTVEQAVAIADKIG 701

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            P +++P        + ++ + + +   +  +   +    +LI++Y+ G E+    + D 
Sbjct: 702 YPVLVRPSYVLGGRAMEIVYRQEELLHYMKNAVKVHADHPVLIDRYMVGKEIEVDAISDG 761

Query: 186 S---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCR 241
               +      + ++  +S        +S  V P + +   + +++        + +   
Sbjct: 762 ENVFIPGIMEHIERAGVHS-------GDSIGVYPPQSLSDKLKEQIIEHTIALGKGLNIV 814

Query: 242 GISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277
           G+    F+      +V+ +E+N       P ++ ++  P  
Sbjct: 815 GLLNIQFVV--FEDQVYVIEVNPRASRTVPFLSKITGVPMA 853


>gi|328946949|ref|YP_004364286.1| Diaminopimelate epimerase [Treponema succinifaciens DSM 2489]
 gi|328447273|gb|AEB12989.1| Diaminopimelate epimerase [Treponema succinifaciens DSM 2489]
          Length = 1411

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 40/265 (15%), Positives = 97/265 (36%), Gaps = 34/265 (12%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH---------GNFGEDG 66
           AL+  G+ V  I         D D S  L    L P+   +V++            G+  
Sbjct: 611 ALKRLGYDVVTINNNPETVSTDFDTSDRLYFEPLTPEDVMSVVNTEKPVGVVVAFGGQTA 670

Query: 67  -LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTMDSQHL 123
             +   L+   I    +   +  L+ D+ R +++     +     + +      +++   
Sbjct: 671 IKLTKFLDSQGIRILGTSADSIDLAEDRERFEELCEKLHINRPKGLTIFTEEEALEATQK 730

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           +  P +++P        +I+   D  +   +    +    + +LI+QY+ G EL    + 
Sbjct: 731 LGYPVLLRPSYVLGGQNMIIAFNDDDVKEYMKIILAQGIENPVLIDQYMMGTELEVDAIC 790

Query: 184 DAS---LDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIG 239
           D     +      + ++  +S        +S  V P   +   + +++   +     A+G
Sbjct: 791 DGKDILIPGIMEHIERTGIHS-------GDSIAVYPSWNLNDILREKIINQSRELALALG 843

Query: 240 CRGISRSDFLFDPLSRKVFWLEINV 264
            +G+    +L    +  ++ +E+N 
Sbjct: 844 TKGLVNIQYLI--YNNDLYIIEVNP 866



 Score = 68.2 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 47/287 (16%), Positives = 105/287 (36%), Gaps = 34/287 (11%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQID---------------------VDRSVGLV 45
           G ++E + +   G     AL++ G +V  ++                     +  ++  +
Sbjct: 21  GQAAEFDYA---GSQACKALKEQGLEVVLVNSNPATLMTDHTMADQIYIEPLIPETIQRI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   KPD   + L G  G    ++      LE   +    +       + D+   K  + 
Sbjct: 78  IEKEKPDSLLSTLGGQTGLTLSMELAKSGFLENHGVKLLGAKPETIDKAEDRQMFKDTML 137

Query: 102 SCGVPVCPSILVNRFTMD---SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS 158
           + G P  PS +V  +       ++ I  P +I+P       G  ++  D+ +        
Sbjct: 138 AIGEPCIPSKVVTTYEDALDFVKNEIGYPAIIRPAFTLGGTGGGIVHNDEEMDEIAHNGL 197

Query: 159 SWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
             +   Q+L+E+ + G  E+   VM D++ +V  + V   + +     ++  +       
Sbjct: 198 HRSPIHQILVEKCISGWKEIEFEVMRDSAGNV--LTVCSMENFDPVGVHTGDSIVIAPTV 255

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +    Y+ ++  A     ++G  G     F  +P S +   +E+N 
Sbjct: 256 TLSDKEYQMLRSAALNIISSLGMEGGCNCQFALNPNSFEYAVIEVNP 302


>gi|327441130|dbj|BAK17495.1| carbamoylphosphate synthase large subunit [Solibacillus silvestris
           StLB046]
          Length = 1065

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 58/302 (19%), Positives = 117/302 (38%), Gaps = 37/302 (12%)

Query: 20  KACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58
           +AC S L++ G+KV  I         D +              V  +L   +PD   + L
Sbjct: 32  QACLS-LKEEGYKVILINSNPATIMTDTEIADKVYIEPISLEFVSRILRKERPDAILSTL 90

Query: 59  HGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
            G  G +  ++     IL+ L I    + + A   + D+   + ++   G PV  S +++
Sbjct: 91  GGQTGLNMAIELDESGILDELGIEILGTKLDAIHKAEDRDLFRNLMYELGAPVPESDIIH 150

Query: 115 RFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                      I  P +++P       G  +   DQ +   +     ++   Q L+E+ +
Sbjct: 151 NMEEAKAFVAKIGYPVIVRPAFTLGGTGGGICYNDQDLQEIVTSGLKYSPVTQCLLEKSI 210

Query: 173 DG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRL 230
            G  E+   VM DA+ +   I V   + +   +   + +S  V P + +     + ++ +
Sbjct: 211 AGFKEIEYEVMRDAADNA--IVVCNMENFD-PVGIHTGDSIVVAPTQTLSDRENQMLRNI 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    +A+   G        DP S + + +E+N  P ++  S     +   GY   +L  
Sbjct: 268 SLDIIRALKIEGGCNVQLALDPYSFQYYVIEVN--PRVSRSS--ALASKATGYPIAKLAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325



 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 23/217 (10%), Positives = 75/217 (34%), Gaps = 20/217 (9%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQHLISPPYV 129
           LE   +    + +     + ++ + +  +    +P  P          M     +  P +
Sbjct: 646 LEANGVKILGTTLEDIDRAENRNKFETALQELKIPQPPGDTATSAEGAMKIAEGLGFPVL 705

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS--- 186
           ++P        + ++   + +   +  +   +    +L+++Y+ G E+    + D     
Sbjct: 706 VRPSYVLGGRAMEIVYNMEELAHYMTNAVEASPDHPVLVDRYLTGQEIEVDAICDGENVL 765

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISR 245
           +      V ++  +S        +S  V P + +     + +        + +G  G+  
Sbjct: 766 IPGIMEHVERAGVHS-------GDSISVYPPQKLTDAQKEILVDYTTRLAKGLGIVGLMN 818

Query: 246 SDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277
             ++      +++ +E+N       P ++ ++  P  
Sbjct: 819 IQYVMSE--GEIYVIEVNPRSSRTVPFLSKITNIPMA 853


>gi|309792429|ref|ZP_07686895.1| carbamoyl-phosphate synthase, large subunit [Oscillochloris
           trichoides DG6]
 gi|308225539|gb|EFO79301.1| carbamoyl-phosphate synthase, large subunit [Oscillochloris
           trichoides DG6]
          Length = 1076

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 48/278 (17%), Positives = 97/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D               S+  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYRVVLVNSNPATIMTDPGLADATYIEPLTVPSLERIIAKERPDAILP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      +L+   +    + + A  ++ D+   K  +   G+ V  S  
Sbjct: 89  TVGGQTALNLAIDLHEAGVLQRYSVELIGASVNAVRVAEDRQLFKDKMLEIGLSVARSGT 148

Query: 113 VNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     +        P +I+P       G  +    +     + +    +   Q+LIE+
Sbjct: 149 AHSLDEALTIVGETGFPAIIRPSFTLGGAGGGIAYNIEEFREIVERGLDASPVTQVLIEE 208

Query: 171 YVDG-IELTCGVMGDA-SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            V G  E    VM D     V   ++   D           +S  V PA  +    Y+++
Sbjct: 209 SVLGWKEFEMEVMRDRMDNGVIICSIENIDPMGVHT----GDSITVAPAMTLTDREYQQM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    +A+G   G S   F  +P   +++ +E+N 
Sbjct: 265 RDQSIAVLRAVGVETGGSNVQFAVNPHDGRIYVIEMNP 302



 Score = 62.4 bits (151), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 30/197 (15%), Positives = 76/197 (38%), Gaps = 10/197 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYV 129
           LE   +P   +   A  L+ D+ R   ++   G+P         +     +   I  P V
Sbjct: 658 LEAAGVPIWGTPPDAIDLAEDRDRFGALLDRLGIPAPAHGSATSWEEARAAAEQIGYPVV 717

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  + S+   + ++ + +    +LI++++ D  E+    + D S  
Sbjct: 718 VRPSYVLGGRAMAIVYDETSLERYMREAVAASPEHPILIDRFLEDAFEMDVDAVSDGSSV 777

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           +    + + +           +S  V+P  +   +  + ++R      + +G  G+   +
Sbjct: 778 IVAGIMEQIELAGVHS----GDSACVIPTYMVAPEHVETLRRYTEQLARELGVVGL--MN 831

Query: 248 FLFDPLSRKVFWLEINV 264
             +      V+ LE+N 
Sbjct: 832 IQYAMKDDIVYVLEVNP 848


>gi|297581017|ref|ZP_06942942.1| carbamoyl-phosphate synthase [Vibrio cholerae RC385]
 gi|297534843|gb|EFH73679.1| carbamoyl-phosphate synthase [Vibrio cholerae RC385]
          Length = 699

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 34/197 (17%), Positives = 77/197 (39%), Gaps = 10/197 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           LE   +P   +   A   + D+ R +Q V   G+    +  V      ++    I  P V
Sbjct: 276 LEAAGVPVIGTSPDAIDRAEDRERFQQAVQRLGLKQPDNATVTAIEQAIEKSREIGFPLV 335

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  +Q +     ++ S ++   +L+++++ D  E+    + D    
Sbjct: 336 VRPSYVLGGRAMEIVYDEQDLRRYFNEAVSVSNESPVLLDRFLDDATEVDVDAICDGERV 395

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           V    +   +    +    S +S   LPA  +  +I  +++         +G RG+    
Sbjct: 396 VIGGIMEHIE----QAGVHSGDSACSLPAYTLSQEIQDKMREQVEKLAFELGVRGLMNIQ 451

Query: 248 FLFDPLSRKVFWLEINV 264
           F       +V+ +E+N 
Sbjct: 452 FAV--KDNEVYLIEVNP 466


>gi|296283599|ref|ZP_06861597.1| hypothetical protein CbatJ_08259 [Citromicrobium bathyomarinum
           JL354]
          Length = 676

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 36/223 (16%), Positives = 77/223 (34%), Gaps = 19/223 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H  +G   E       LE   I +    + A A   DK+ SK +    GV V P  + 
Sbjct: 77  AVHPGYGFLSERASFVEALEKEGIAFIGPPVNAIAAMGDKIESKMIAKEAGVNVVPGFVG 136

Query: 113 ---VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
                   ++  + I+ P ++K   GG   G+ +   ++ +      +          D+
Sbjct: 137 EIRDTEHAVEIANEITYPVMMKASAGGGGKGMRLAYSEKDVREGFEATKREGLNSFGDDR 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE++++    +   ++GD   +V  +   +        K             +   + 
Sbjct: 197 VFIEKFIENPRHIEIQILGDKHGNVIYLNERECSIQRRHQK----VVEEAPSPFVTAKMR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLF---DPLSRKVFWLEINV 264
           K +        +A+        + +    DP     ++LE+N 
Sbjct: 253 KAMGEQCVALSKAVNYHSAGTVELIVSGADPTGESFYFLEMNT 295


>gi|261211488|ref|ZP_05925776.1| carbamoyl-phosphate synthase large chain [Vibrio sp. RC341]
 gi|260839443|gb|EEX66069.1| carbamoyl-phosphate synthase large chain [Vibrio sp. RC341]
          Length = 1076

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 34/197 (17%), Positives = 77/197 (39%), Gaps = 10/197 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           LE   +P   +   A   + D+ R +Q V   G+    +  V      ++    I  P V
Sbjct: 653 LEAAGVPVIGTSPDAIDRAEDRERFQQAVQRLGLKQPDNATVTAIEQAIEKSREIGFPLV 712

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  +Q +     ++ S ++   +L+++++ D  E+    + D    
Sbjct: 713 VRPSYVLGGRAMEIVYDEQDLRRYFNEAVSVSNESPVLLDRFLDDATEVDVDAICDGERV 772

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           V    +   +    +    S +S   LPA  +  +I  +++         +G RG+    
Sbjct: 773 VIGGIMEHIE----QAGVHSGDSACSLPAYTLSQEIQDKMREQVEKLAFELGVRGLMNIQ 828

Query: 248 FLFDPLSRKVFWLEINV 264
           F       +V+ +E+N 
Sbjct: 829 FAV--KDNEVYLIEVNP 843



 Score = 60.5 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 44/278 (15%), Positives = 95/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D +              V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAILP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV--PVCPS 110
            + G    +  +      +L    +    +   A   + D+ R  + + S G+  P   +
Sbjct: 89  TMGGQTALNCALALEKHGVLAEFGVEMIGATADAIDKAEDRSRFDKAMKSIGLECPRADT 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                       ++  P +I+P       G  +    +       +    +  ++LLI++
Sbjct: 149 AKSMEEAYKVLDMVGFPCIIRPSFTMGGSGGGIAYNREEFEEICERGLDLSPTNELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + + +   A+   D           +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCAIENFDPMGIHT----GDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P   ++  +E+N 
Sbjct: 265 RNASLAVLREIGVETGGSNVQFGINPKDGRMVIIEMNP 302


>gi|290957731|ref|YP_003488913.1| ATP-binding biosynthetic protein [Streptomyces scabiei 87.22]
 gi|260647257|emb|CBG70362.1| putative ATP-binding biosynthetic enzyme [Streptomyces scabiei
           87.22]
          Length = 393

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 25/106 (23%), Positives = 49/106 (46%), Gaps = 6/106 (5%)

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGS 137
           T + +       +K  ++ + +  GVP   S+     R    +   +  P VIKP     
Sbjct: 73  TANSVEVMRACRNKATARTLFARHGVPSAASMTARTLREAERATRTLGFPAVIKPAAAAG 132

Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQ----LLIEQYVDGIELTC 179
           S+G+I I + + +P     +S+  H  +    +L+E+Y+DG E++ 
Sbjct: 133 SIGVIRIDRPEELPAAFEFASAGAHRSREDSGVLVEEYLDGPEVSV 178


>gi|255066138|ref|ZP_05317993.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Neisseria sicca
           ATCC 29256]
 gi|255049683|gb|EET45147.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Neisseria sicca
           ATCC 29256]
          Length = 453

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 39/222 (17%), Positives = 82/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         L  DK+ +K  +   GVP  P    
Sbjct: 77  AIHPGYGFLAENANFAEQVEQSGFIFIGPKAETIRLMGDKVSAKHAMIEAGVPCVPGSDG 136

Query: 112 LVNRFTMD---SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
            ++    +   +   +  P +IK   GG   G+ V++K + +   +     ++ +     
Sbjct: 137 ALSDDPAEILKTADKVGYPVIIKASGGGGGRGMRVVEKKEDLIKSVEMTKAEAGAAFGNP 196

Query: 165 QLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+Y+     +   V+ D   +   +A           K          PA  I   
Sbjct: 197 MVYMERYLQRPRHVEIQVLADEHGNAIYLAERDCSMQRRHQK-----VIEEAPAPFIDEK 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +++ +    A + IG RG    +FL+   + + F++E+N 
Sbjct: 252 AREKIGKACTDACKRIGYRGAGTFEFLY--ENGEFFFIEMNT 291


>gi|253680897|ref|ZP_04861700.1| carbamoyl-phosphate synthase, large subunit [Clostridium botulinum
           D str. 1873]
 gi|253562746|gb|EES92192.1| carbamoyl-phosphate synthase, large subunit [Clostridium botulinum
           D str. 1873]
          Length = 1063

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 40/265 (15%), Positives = 99/265 (37%), Gaps = 34/265 (12%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ------ 69
           A+ +AG++   +         D D S  L    L  D   NV+     +  ++Q      
Sbjct: 580 AINNAGYESIMVNNNPETVSTDFDISNKLYFESLYIDDVMNVIRKENPKGVILQFGGQTS 639

Query: 70  -AILELL---EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--FTMDSQHL 123
             + E L    +    +   +  L+ D+ + ++++ S  +       V            
Sbjct: 640 INLAEKLSKRGVNILGTSFESIDLAEDREKFRELLESLNIKTPTGRPVTCIYEAYKVVEK 699

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           +  P +++P        + VI  D+++   + ++ S +    +++++YV G E+    + 
Sbjct: 700 LGYPVIVRPSYVIGGRAMEVIYDDKALEKYMKEAVSLSSEHTIIVDKYVRGTEIEVDAIC 759

Query: 184 DAS---LDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIG 239
           D     +      + ++  +S        +S  V P   +  D+  ++        +A+ 
Sbjct: 760 DGEDVLMPGIMEHIERTGVHS-------GDSITVYPYITLNEDVIDKLVENTKKIAKALK 812

Query: 240 CRGISRSDFLFDPLSRKVFWLEINV 264
             G+    ++FD     ++ +E+N 
Sbjct: 813 IVGLMNIQYVFDGKD--IYVIEVNP 835



 Score = 47.8 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 38/199 (19%), Positives = 75/199 (37%), Gaps = 7/199 (3%)

Query: 70  AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-ILVN-RFTMDSQHLISPP 127
            +L+   +        A   + D+   K ++   G P+  S I VN +   +       P
Sbjct: 106 GVLKKYNVKLLGINGEAIKKAEDREEFKDLMLQIGEPIPESTIAVNIQECKEFVEKHGLP 165

Query: 128 YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDAS 186
            +I+P       G  + +  +            +  +Q+L+EQ V G  EL   V+ D  
Sbjct: 166 IIIRPAYTLGGTGGGIAETMEEYLKICNLGLKMSPINQILLEQSVAGWKELEYEVIRDKK 225

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISR 245
            +   I   ++      +   + +S  V P++ +    Y  ++  A    +++   G   
Sbjct: 226 DNCIIICNMEN---IDPVGVHTGDSIVVAPSQTLTDREYHMLRNSALKIIRSLKIEGGCN 282

Query: 246 SDFLFDPLSRKVFWLEINV 264
             F  DP+S K   +E+N 
Sbjct: 283 IQFALDPISNKYIVIEVNP 301


>gi|299823001|ref|ZP_07054887.1| acetyl-CoA carboxylase subunit A [Listeria grayi DSM 20601]
 gi|299816530|gb|EFI83768.1| acetyl-CoA carboxylase subunit A [Listeria grayi DSM 20601]
          Length = 455

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 41/220 (18%), Positives = 83/220 (37%), Gaps = 16/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     + E   I +      A A    K  +++ +   GVP+ P    
Sbjct: 77  AVHPGYGFLSENPDFAELCEDCNITFIGPSAAAIAQMGTKDVARETMRKAGVPIVPGSQG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
            I            I  P +IK   GG   GI V + ++ +   +     ++ +      
Sbjct: 137 IIATVEDGKKIAKKIGYPVIIKATAGGGGKGIRVAEDEEKLVSGIQMTQQEAEAAFGDPG 196

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+Y+     +   V+ D   +V  +            K    + +   PA I   + 
Sbjct: 197 VYIEKYIQDFRHVEIQVLADNHGNVIHLGERDCSVQRRLQKLIEESPS---PA-IDEKMR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +++ + A  A +A+   G    +F++D    K +++E+N 
Sbjct: 253 QKMGKAAVKAAKAVDYSGAGTIEFIYDHHEHKFYFMEMNT 292


>gi|332361057|gb|EGJ38861.1| carbamoyl-phosphate synthase, large subunit [Streptococcus
           sanguinis SK1056]
          Length = 1059

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 23/224 (10%), Positives = 72/224 (32%), Gaps = 11/224 (4%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYV 129
           L    +    + +     + D+   +Q +    +P  P           ++   I  P +
Sbjct: 646 LSKAGVMILGTQVADLDRAEDRDLFEQALKELDIPQPPGQTATNEEEAVEAARKIGFPVL 705

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           ++P        + +++ +  +   +  +   +    +L++ Y+ G E     + D    +
Sbjct: 706 VRPSYVLGGRAMEIVENEADLRSYMRTAVKASPDHPVLVDSYIVGDECEVDAISDGRQVL 765

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
               +   +       +S  +     P  +   +   +          + C G+    F+
Sbjct: 766 IPGIMEHIERAGV---HSGDSMAAYPPQTLSQKVKDTIAEYTKRLALGLNCIGMMNIQFV 822

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
                 +V+ +E+N +   T     P ++        ++   ++
Sbjct: 823 I--KDEQVYVIEVNPRASRT----VPFLSKVTDIPMAQVATRLI 860



 Score = 65.9 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 37/206 (17%), Positives = 78/206 (37%), Gaps = 9/206 (4%)

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147
           + D+   KQ++   G P+  S +VN     ++    I  P +++P       G  +   +
Sbjct: 126 AEDRDLFKQLMEELGQPIPESEIVNTVDEALEFAAGIGYPVIVRPAFTLGGTGGGICSNE 185

Query: 148 QSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
           + +          +   Q LIE+ + G  E+   VM D + +   + V   + +     +
Sbjct: 186 EELQEIAENGLKLSPVTQCLIERSIAGFKEIEYEVMRDGADNA--LVVCNMENFDPVGIH 243

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
           +  +        I    Y+ ++  +    +A+   G        DP S K + +E+N  P
Sbjct: 244 TGDSIVFAPSQTISDYEYQMLRDASLKIIRALKIEGGCNVQLALDPHSFKYYVIEVN--P 301

Query: 267 GMTPVSIFPEMAAYAGYSFRELLLWM 292
            ++  S     +   GY   +L   +
Sbjct: 302 RVSRSS--ALASKATGYPIAKLAAKI 325


>gi|313225487|emb|CBY06961.1| unnamed protein product [Oikopleura dioica]
          Length = 1170

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 40/241 (16%), Positives = 79/241 (32%), Gaps = 18/241 (7%)

Query: 33  VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
            + +DV   +  +      D      +G   E            I +            D
Sbjct: 82  AAYLDV-PDIIRICKEQNVDAVHPG-YGFLSERADFAQACTDNGIKFIGPKPDIVHKMGD 139

Query: 93  KMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQ 148
           K+ ++ +  + GVPV P     I  N            P ++K   GG   G+ +I+ D 
Sbjct: 140 KVEARAIAIAAGVPVVPGTDNPIENNSEIRKFIESHGLPVIVKAAYGGGGKGMRIIRNDS 199

Query: 149 SI----PLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYE 203
            I     L   +++       L +E Y++    +   ++GD   ++  +           
Sbjct: 200 EIDSQFELAKSEAARAFGNGSLFVEAYLEKPRHIEVQILGDEHGNIVHLYERDCSIQRRH 259

Query: 204 LKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
            K        + P   +   + + +   A      +G +     +FL D   R  F++E+
Sbjct: 260 QK-----VVEIAPGHLLDPVVRQNMLDDAVKLCNYVGYQNAGTVEFLLDSEGRH-FFIEV 313

Query: 263 N 263
           N
Sbjct: 314 N 314


>gi|303256680|ref|ZP_07342694.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Burkholderiales
           bacterium 1_1_47]
 gi|302860171|gb|EFL83248.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Burkholderiales
           bacterium 1_1_47]
          Length = 452

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 81/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+      +E     +         L  DK+ +KQ +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAERVESSGFVFIGPRPETIRLMGDKVSAKQAMIDAGVPCVPGSGG 136

Query: 111 -ILVNRFTMDS-QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
            +  +   +      +  P +IK   GG   G+ V+  + ++   +     ++ +    D
Sbjct: 137 ALPDDPSEIIKIARSVGYPVIIKASGGGGGRGMKVVHTEAALINAVNTTKQEAKAAFGND 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLD 222
            + +E++++    +   V+ D   +   +            K          PA  IP  
Sbjct: 197 TVYLEKFLENPRHIEIQVLADNFRNAIWLGERDCSMQRRNQK-----VIEESPAIGIPRR 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +++        + IG RG    +FL+   + + +++E+N 
Sbjct: 252 AIEKIGERCAEGCRKIGYRGAGTFEFLY--ENGEFYFIEMNT 291


>gi|296481629|gb|DAA23744.1| propionyl-CoA carboxylase alpha chain, mitochondrial [Bos taurus]
          Length = 715

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 74/221 (33%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      L   ++ +      A     DK+ SK +     V   P    
Sbjct: 138 AVHPGYGFLSENKEFAKRLAAEDVIFIGPDTHAIQAMGDKIESKLLAKKAKVNTIPGFDG 197

Query: 112 LVNRFTMDS--QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGD 164
           +V            I  P +IK   GG   G+ +   D+             +SS+   D
Sbjct: 198 VVKDADEAVRIAREIGYPVMIKASAGGGGKGMRIAWDDEETRDGFRFSSQEAASSFG-DD 256

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           +LLIE+++D    +   V+GD   +   +   +        K             +  + 
Sbjct: 257 RLLIEKFIDNPRHIEIQVLGDKHGNALWLNERECSIQRRNQK----VVEEAPSIFLDSET 312

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +   A    +A+        +FL D      ++LE+N 
Sbjct: 313 RRAMGEQAVALAKAVNYSSAGTVEFLVDSKKN-FYFLEMNT 352


>gi|258620887|ref|ZP_05715921.1| carbamoyl-phosphate synthase large subunit [Vibrio mimicus VM573]
 gi|262166435|ref|ZP_06034172.1| carbamoyl-phosphate synthase large chain [Vibrio mimicus VM223]
 gi|258586275|gb|EEW10990.1| carbamoyl-phosphate synthase large subunit [Vibrio mimicus VM573]
 gi|262026151|gb|EEY44819.1| carbamoyl-phosphate synthase large chain [Vibrio mimicus VM223]
          Length = 1076

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 34/197 (17%), Positives = 77/197 (39%), Gaps = 10/197 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           LE   +P   +   A   + D+ R +Q V   G+    +  V      ++    I  P V
Sbjct: 653 LEAAGVPVIGTSPDAIDRAEDRERFQQAVQRLGLKQPDNATVTAIEQAIEKSREIGFPLV 712

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  +Q +     ++ S ++   +L+++++ D  E+    + D    
Sbjct: 713 VRPSYVLGGRAMEIVYDEQDLRRYFNEAVSVSNESPVLLDRFLDDATEVDVDAICDGERV 772

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           V    +   +    +    S +S   LPA  +  +I  +++         +G RG+    
Sbjct: 773 VIGGIMEHIE----QAGVHSGDSACSLPAYTLSQEIQDKMREQVEKLAFELGVRGLMNIQ 828

Query: 248 FLFDPLSRKVFWLEINV 264
           F       +V+ +E+N 
Sbjct: 829 FAV--KDNEVYLIEVNP 843



 Score = 59.4 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 44/278 (15%), Positives = 95/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D +              V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAILP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV--PVCPS 110
            + G    +  +      +L    +    +   A   + D+ R  + + S G+  P   +
Sbjct: 89  TMGGQTALNCALALEKHGVLAEFGVEMIGATADAIDKAEDRSRFDKAMKSIGLECPRADT 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                       ++  P +I+P       G  +    +       +    +  ++LLI++
Sbjct: 149 AKSMEEAYKVLDMVGFPCIIRPSFTMGGSGGGIAYNREEFEEICTRGLDLSPTNELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + + +   A+   D           +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCAIENFDPMGIHT----GDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P   ++  +E+N 
Sbjct: 265 RNASLAVLREIGVETGGSNVQFGINPKDGRMVIIEMNP 302


>gi|91793600|ref|YP_563251.1| carbamoyl-phosphate synthase L chain, ATP-binding [Shewanella
           denitrificans OS217]
 gi|91715602|gb|ABE55528.1| 3-methylcrotonoyl-CoA carboxylase, alpha subunit [Shewanella
           denitrificans OS217]
          Length = 697

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 44/225 (19%), Positives = 81/225 (36%), Gaps = 22/225 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       E   I +   G  A      K  +K+++    VP+ P    
Sbjct: 77  AIHPGYGFLSENAEFARKCEQNGIAFVGPGSEAIEAMGSKSAAKEIMGKANVPLVPGYHG 136

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
           +  T D       LI  P +IK   GG   G+ +++ +  I   +  +          D+
Sbjct: 137 DDQTDDNLVQQAKLIGFPLLIKAAYGGGGKGMRIVENEGEILAAVKSARREATSSFGNDK 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           LL+E+Y+     +   V  D   +   ++           K          PA  +   +
Sbjct: 197 LLMERYLRQPRHVEVQVFADTHGNAIYLSDRDCSIQRRHQK-----VVEEAPAPGLSDAL 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFD----PLSRKVFWLEINV 264
             ++ + A  A +AI   G    +FL D      S   +++E+N 
Sbjct: 252 RAQMGQAAVAAAKAIDYVGAGTVEFLLDTLATDESSSFYFMEMNT 296


>gi|254226144|ref|ZP_04919740.1| carbamoyl-phosphate synthase, large subunit [Vibrio cholerae V51]
 gi|125621312|gb|EAZ49650.1| carbamoyl-phosphate synthase, large subunit [Vibrio cholerae V51]
          Length = 978

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 34/197 (17%), Positives = 77/197 (39%), Gaps = 10/197 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           LE   +P   +   A   + D+ R +Q V   G+    +  V      ++    I  P V
Sbjct: 555 LEAAGVPVIGTSPDAIDRAEDRERFQQAVQRLGLKQPDNATVTAIEQAIEKSREIGFPLV 614

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  +Q +     ++ S ++   +L+++++ D  E+    + D    
Sbjct: 615 VRPSYVLGGRAMEIVYDEQDLRRYFNEAVSVSNESPVLLDRFLDDATEVDVDAICDGERV 674

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           V    +   +    +    S +S   LPA  +  +I  +++         +G RG+    
Sbjct: 675 VIGGIMEHIE----QAGVHSGDSACSLPAYTLSQEIQDKMREQVEKLAFELGVRGLMNIQ 730

Query: 248 FLFDPLSRKVFWLEINV 264
           F       +V+ +E+N 
Sbjct: 731 FAV--KDNEVYLIEVNP 745



 Score = 46.3 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 33/201 (16%), Positives = 73/201 (36%), Gaps = 10/201 (4%)

Query: 70  AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV--PVCPSILVNRFTMDSQHLISPP 127
            +L    +    +   A   + D+ R  + + S G+  P   +            ++  P
Sbjct: 8   GVLAEFGVEMIGATADAIDKAEDRSRFDKAMKSIGLECPRADTAKSMEEAYKVLDMVGFP 67

Query: 128 YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDAS 186
            +I+P       G  +    +       +    +  ++LLI++ + G  E    V+ D +
Sbjct: 68  CIIRPSFTMGGSGGGIAYNREEFEEICTRGLDLSPTNELLIDESLIGWKEYEMEVVRDKN 127

Query: 187 LD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCR-GI 243
            + +   A+   D           +S  V PA+ +    Y+ ++  +    + IG   G 
Sbjct: 128 DNCIIVCAIENFDPMGIHT----GDSITVAPAQTLTDKEYQIMRNASLAVLREIGVETGG 183

Query: 244 SRSDFLFDPLSRKVFWLEINV 264
           S   F  +P   ++  +E+N 
Sbjct: 184 SNVQFGINPKDGRMVIIEMNP 204


>gi|16759060|ref|NP_454677.1| carbamoyl phosphate synthase large subunit [Salmonella enterica
           subsp. enterica serovar Typhi str. CT18]
 gi|29140610|ref|NP_803952.1| carbamoyl phosphate synthase large subunit [Salmonella enterica
           subsp. enterica serovar Typhi str. Ty2]
 gi|213163014|ref|ZP_03348724.1| carbamoyl phosphate synthase large subunit [Salmonella enterica
           subsp. enterica serovar Typhi str. E00-7866]
 gi|289826208|ref|ZP_06545320.1| carbamoyl phosphate synthase large subunit [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-3139]
 gi|22095513|sp|Q8Z9L7|CARB_SALTI RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|25293883|pir||AE0510 carbamoyl-phosphate synthase large chain [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16501350|emb|CAD01221.1| carbamoyl-phosphate synthase large chain [Salmonella enterica
           subsp. enterica serovar Typhi]
 gi|29136234|gb|AAO67801.1| carbamoyl-phosphate synthase large chain [Salmonella enterica
           subsp. enterica serovar Typhi str. Ty2]
          Length = 1075

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 98/278 (35%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D +              V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +    Q +LE   +    +   A   + D+ R    +   G+    S +
Sbjct: 89  TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDIAMKKIGLDTARSGI 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     +     +  P +I+P       G  +    +       +    +  ++LLI++
Sbjct: 149 AHTMEEALAVAADVGFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTNELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + +   +   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIEN----FDAMGIHTGDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RNASMAVLREIGVETGGSNVQFAVNPKNGRLIVIEMNP 302



 Score = 61.7 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/197 (14%), Positives = 74/197 (37%), Gaps = 10/197 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           LE   +P   +   A   + D+ R +  V    +    +  V      ++    I  P V
Sbjct: 654 LEAAGVPVIGTSPDAIDRAEDRERFQHAVDRLKLKQPANATVTAIEQAVEKAKEIGYPLV 713

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  +  +      + S ++   +L+++++ D +E+    + D  + 
Sbjct: 714 VRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDRFLDDAVEVDVDAICDGEMV 773

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           +    +   +    +    S +S   LPA  +  +I   +++        +  RG+    
Sbjct: 774 LIGGIMEHIE----QAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRGLMNVQ 829

Query: 248 FLFDPLSRKVFWLEINV 264
           F       +V+ +E+N 
Sbjct: 830 FAV--KDNEVYLIEVNP 844


>gi|254243588|ref|ZP_04936910.1| hypothetical protein PA2G_04411 [Pseudomonas aeruginosa 2192]
 gi|126196966|gb|EAZ61029.1| hypothetical protein PA2G_04411 [Pseudomonas aeruginosa 2192]
          Length = 458

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 36/223 (16%), Positives = 81/223 (36%), Gaps = 25/223 (11%)

Query: 58  LHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
           +H  +G   E+      ++   + +            DK  +++   +  VPV P     
Sbjct: 81  IHPGYGFLSENPAFAEAVQAAGLVFVGPEAQTIRRMGDKAEARRTAMAAEVPVVPGSPGE 140

Query: 115 RFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGDQL 166
              +D+       +  P ++K   GG   GI +      +    P+   ++ +      +
Sbjct: 141 LGDLDAALACAEEVGYPLLVKASAGGGGRGIRIAHDADELRREFPIAQREAQAAFGSPAV 200

Query: 167 LIEQYVD-GIELTCGVMGDASLDVT----EIAVPKSDFYSYELKYSSLNSTHVLPAKIPL 221
            +E+++     +   ++GD    V     E ++ +     +E             A +  
Sbjct: 201 YLERFIRQARHIEVQILGDGERAVHLFERECSLQRRRQKVFE---------EAPSAALDG 251

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              + +   A    Q++G RG    ++LFD  S + F++E+N 
Sbjct: 252 AQRQALCESAVRLAQSLGYRGAGTLEYLFDAHSGEFFFIEMNT 294


>gi|261338962|ref|ZP_05966820.1| hypothetical protein ENTCAN_05164 [Enterobacter cancerogenus ATCC
           35316]
 gi|288318790|gb|EFC57728.1| carbamoyl-phosphate synthase, large subunit [Enterobacter
           cancerogenus ATCC 35316]
          Length = 1074

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 97/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D +              V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +    Q +LE   +    +   A   + D+ R    +   G+    S +
Sbjct: 89  TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLDTARSGI 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     +     +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHNMEEALAVAADVGYPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTKELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + +   +   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIEN----FDAMGIHTGDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RNASMAVLREIGVETGGSNVQFSVNPKTGRLIVIEMNP 302



 Score = 62.8 bits (152), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 34/221 (15%), Positives = 83/221 (37%), Gaps = 14/221 (6%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYV 129
           LE   +P   +   A   + D+ R +Q V    +    +  V    M  +    I  P V
Sbjct: 654 LEAAGVPVIGTSPDAIDRAEDRERFQQAVDRLKLKQPANATVTAIEMAVEKAKEIGYPLV 713

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  +  +      + S ++   +L+++++ D +E+    + D  + 
Sbjct: 714 VRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDRFLDDAVEVDVDAICDGEMV 773

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           +    +   +    +    S +S   LPA  +  +I   +++        +  RG+    
Sbjct: 774 LIGGIMEHIE----QAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRGLMNVQ 829

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           F       +V+ +E+N +   T     P ++   G    ++
Sbjct: 830 FAV--KDNEVYLIEVNPRAART----VPFVSKATGIPLAKV 864


>gi|168243534|ref|ZP_02668466.1| carbamoyl-phosphate synthase, large subunit [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL486]
 gi|194447884|ref|YP_002044034.1| carbamoyl phosphate synthase large subunit [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL476]
 gi|194406188|gb|ACF66407.1| carbamoyl-phosphate synthase, large subunit [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL476]
 gi|205337398|gb|EDZ24162.1| carbamoyl-phosphate synthase, large subunit [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL486]
          Length = 1075

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 98/278 (35%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D +              V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +    Q +LE   +    +   A   + D+ R    +   G+    S +
Sbjct: 89  TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDIAMKKIGLDTARSGI 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     +     +  P +I+P       G  +    +       +    +  ++LLI++
Sbjct: 149 AHTMEEALAVAADVGFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTNELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + +   +   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIEN----FDAMGIHTGDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RNASMAVLREIGVETGGSNVQFAVNPKNGRLIVIEMNP 302



 Score = 61.7 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/197 (14%), Positives = 74/197 (37%), Gaps = 10/197 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           LE   +P   +   A   + D+ R +  V    +    +  V      ++    I  P V
Sbjct: 654 LEAAGVPVIGTSPDAIDRAEDRERFQHAVDRLKLKQPANATVTAIEQAVEKAKEIGYPLV 713

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  +  +      + S ++   +L+++++ D +E+    + D  + 
Sbjct: 714 VRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDRFLDDAVEVDVDAICDGEMV 773

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           +    +   +    +    S +S   LPA  +  +I   +++        +  RG+    
Sbjct: 774 LIGGIMEHIE----QAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRGLMNVQ 829

Query: 248 FLFDPLSRKVFWLEINV 264
           F       +V+ +E+N 
Sbjct: 830 FAV--KDNEVYLIEVNP 844


>gi|168820960|ref|ZP_02832960.1| carbamoyl-phosphate synthase, large subunit [Salmonella enterica
           subsp. enterica serovar Weltevreden str. HI_N05-537]
 gi|197250511|ref|YP_002145050.1| carbamoyl phosphate synthase large subunit [Salmonella enterica
           subsp. enterica serovar Agona str. SL483]
 gi|197214214|gb|ACH51611.1| carbamoyl-phosphate synthase, large subunit [Salmonella enterica
           subsp. enterica serovar Agona str. SL483]
 gi|205342414|gb|EDZ29178.1| carbamoyl-phosphate synthase, large subunit [Salmonella enterica
           subsp. enterica serovar Weltevreden str. HI_N05-537]
 gi|320084305|emb|CBY94098.1| carbamoyl-phosphate synthase, large subunit [Salmonella enterica
           subsp. enterica serovar Weltevreden str. 2007-60-3289-1]
          Length = 1075

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 98/278 (35%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D +              V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +    Q +LE   +    +   A   + D+ R    +   G+    S +
Sbjct: 89  TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDIAMKKIGLDTARSGI 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     +     +  P +I+P       G  +    +       +    +  ++LLI++
Sbjct: 149 AHTMEEALAVAADVGFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTNELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + +   +   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIEN----FDAMGIHTGDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RNASMAVLREIGVETGGSNVQFAVNPKNGRLIVIEMNP 302



 Score = 61.7 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/197 (14%), Positives = 74/197 (37%), Gaps = 10/197 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           LE   +P   +   A   + D+ R +  V    +    +  V      ++    I  P V
Sbjct: 654 LEAAGVPVIGTSPDAIDRAEDRERFQHAVDRLKLKQPANATVTAIEQAVEKAKEIGYPLV 713

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  +  +      + S ++   +L+++++ D +E+    + D  + 
Sbjct: 714 VRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDRFLDDAVEVDVDAICDGEMV 773

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           +    +   +    +    S +S   LPA  +  +I   +++        +  RG+    
Sbjct: 774 LIGGIMEHIE----QAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRGLMNVQ 829

Query: 248 FLFDPLSRKVFWLEINV 264
           F       +V+ +E+N 
Sbjct: 830 FAV--KDNEVYLIEVNP 844


>gi|168230330|ref|ZP_02655388.1| carbamoyl-phosphate synthase, large subunit [Salmonella enterica
           subsp. enterica serovar Kentucky str. CDC 191]
 gi|194472177|ref|ZP_03078161.1| carbamoyl-phosphate synthase, large subunit [Salmonella enterica
           subsp. enterica serovar Kentucky str. CVM29188]
 gi|194458541|gb|EDX47380.1| carbamoyl-phosphate synthase, large subunit [Salmonella enterica
           subsp. enterica serovar Kentucky str. CVM29188]
 gi|205334983|gb|EDZ21747.1| carbamoyl-phosphate synthase, large subunit [Salmonella enterica
           subsp. enterica serovar Kentucky str. CDC 191]
          Length = 1075

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 98/278 (35%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D +              V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +    Q +LE   +    +   A   + D+ R    +   G+    S +
Sbjct: 89  TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDIAMKKIGLDTARSGI 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     +     +  P +I+P       G  +    +       +    +  ++LLI++
Sbjct: 149 AHTMEEALAVAADVGFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTNELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + +   +   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIEN----FDAMGIHTGDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RNASMAVLREIGVETGGSNVQFAVNPKNGRLIVIEMNP 302



 Score = 61.7 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/197 (14%), Positives = 74/197 (37%), Gaps = 10/197 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           LE   +P   +   A   + D+ R +  V    +    +  V      ++    I  P V
Sbjct: 654 LEAAGVPVIGTSPDAIDRAEDRERFQHAVDRLKLKQPANATVTAIEQAVEKAKEIGYPLV 713

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  +  +      + S ++   +L+++++ D +E+    + D  + 
Sbjct: 714 VRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDRFLDDAVEVDVDAICDGEMV 773

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           +    +   +    +    S +S   LPA  +  +I   +++        +  RG+    
Sbjct: 774 LIGGIMEHIE----QAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRGLMNVQ 829

Query: 248 FLFDPLSRKVFWLEINV 264
           F       +V+ +E+N 
Sbjct: 830 FAV--KDNEVYLIEVNP 844


>gi|167550756|ref|ZP_02344513.1| carbamoyl-phosphate synthase, large subunit [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA29]
 gi|205324441|gb|EDZ12280.1| carbamoyl-phosphate synthase, large subunit [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA29]
          Length = 1075

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 98/278 (35%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D +              V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +    Q +LE   +    +   A   + D+ R    +   G+    S +
Sbjct: 89  TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDIAMKKIGLDTARSGI 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     +     +  P +I+P       G  +    +       +    +  ++LLI++
Sbjct: 149 AHTMEEALAVAADVGFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTNELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + +   +   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIEN----FDAMGIHTGDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RNASMAVLREIGVETGGSNVQFAVNPKNGRLIVIEMNP 302



 Score = 61.7 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/197 (14%), Positives = 74/197 (37%), Gaps = 10/197 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           LE   +P   +   A   + D+ R +  V    +    +  V      ++    I  P V
Sbjct: 654 LEAAGVPVIGTSPDAIDRAEDRERFQHAVDRLKLKQPANATVTAIEQAVEKAKEIGYPLV 713

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  +  +      + S ++   +L+++++ D +E+    + D  + 
Sbjct: 714 VRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDRFLDDAVEVDVDAICDGEMV 773

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           +    +   +    +    S +S   LPA  +  +I   +++        +  RG+    
Sbjct: 774 LIGGIMEHIE----QAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRGLMNVQ 829

Query: 248 FLFDPLSRKVFWLEINV 264
           F       +V+ +E+N 
Sbjct: 830 FAV--KDNEVYLIEVNP 844


>gi|326406157|gb|ADZ63228.1| pyruvate carboxylase subunit A [Lactococcus lactis subsp. lactis
           CV56]
          Length = 1137

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 28/167 (16%), Positives = 63/167 (37%), Gaps = 13/167 (7%)

Query: 104 GVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
           G+P     +     ++       P +IK   GG   G+ V + D  +     ++ S   G
Sbjct: 130 GIPGTNGAVDIEGALEFAKTYGYPVMIKAALGGGGRGMRVARNDAEMHDGYARAKSEAIG 189

Query: 164 ----DQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA- 217
                ++ +E+Y++    +   ++GD+  ++              ++  +     + PA 
Sbjct: 190 AFGSGEIYVEKYIENPKHIEVQILGDSHGNII-----HLHERDCSVQRRNQKVIEIAPAV 244

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + LD   E+   A    + +G       +FL      K +++E+N 
Sbjct: 245 GLSLDFRNEICEAAVKLCKNVGYVNAGTVEFLV--KDDKFYFIEVNP 289


>gi|309389735|gb|ADO77615.1| carbamoyl-phosphate synthase large subunit [Halanaerobium
           praevalens DSM 2228]
          Length = 1071

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 27/219 (12%), Positives = 82/219 (37%), Gaps = 11/219 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--QHLISPPYV 129
           L    +    + + +  L+ D+ R   +++   +PV    +             I+ P +
Sbjct: 650 LAEAGVNILGTSVDSIDLAEDRDRFIGLLNKLKIPVPAGKVAANLNEAEKIAAEIAYPVL 709

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           ++P        + V+  +Q +   +  +   +    +L+++Y+ G E+    + D    +
Sbjct: 710 VRPSYVLGGRAMEVVYNEQELADYMKNAVKVSPDRPVLVDKYLTGTEIEIDAVSDGETVI 769

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
               +   +       +S  +     P ++  ++  +  +      +A+  +G+    ++
Sbjct: 770 VPGIMEHVERAGV---HSGDSIAVYPPHRLGEELKAKAVKYTEKIARALKIKGVINIQYV 826

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
               + ++F +E+N +   T     P ++   G    +L
Sbjct: 827 V--SNGEIFVIEVNPRSSRT----IPYLSKVTGVPMVDL 859



 Score = 66.7 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 52/286 (18%), Positives = 102/286 (35%), Gaps = 33/286 (11%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQID------------VDR---------SVGLV 45
           G ++E + S   G     AL++ G +V  ++             DR         S+  +
Sbjct: 21  GQAAEFDYS---GSQACRALKEEGLEVVLVNSNPATIMTDENMADRVYIEPLTVASIIEI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           L    PD     L G    +  +      IL+ L I    + I     + D+   K++++
Sbjct: 78  LKQENPDGIIPTLGGQIALNLAIDLAKTNILKELNIELLGTPIETIKRAEDRNTFKELMN 137

Query: 102 SCGVPVCPSILVNRFTMDSQHLI--SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G P+  S         +        P +++P       G  V    + +     +   
Sbjct: 138 EIGEPILASKTAENIEEAAAIAADIGYPVIVRPAYTMGGTGGGVANNLEELKEITARGFK 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   Q+LIE+ + G  E+   VM DA+ +   I V   + +     ++  +        
Sbjct: 198 HSLIGQVLIERSIKGWKEIEYEVMRDANNN--CIVVCNMENFDPVGVHTGDSIVVAPSQT 255

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +    Y+  +  A    +A+G  G     +  DP S + + +E+N 
Sbjct: 256 LTDKEYQMFRSSALKIIRALGIEGGCNVQYALDPESFQYYIIEVNP 301


>gi|293607215|ref|ZP_06689556.1| urea carboxylase [Achromobacter piechaudii ATCC 43553]
 gi|292814307|gb|EFF73447.1| urea carboxylase [Achromobacter piechaudii ATCC 43553]
          Length = 1215

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 33/198 (16%), Positives = 67/198 (33%), Gaps = 14/198 (7%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF---TMDSQHLISPPYVIKP 132
            I +     L       K RS+++    GVP+ P   +       +     I  P ++K 
Sbjct: 99  GIAFVGPTPLQIREFGLKHRSRELAGQAGVPMTPGTGLLASLGEALSQAERIGYPVMLKS 158

Query: 133 LKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQLLIEQYVD-GIELTCGVMGDASL 187
             GG  +G+   + +  + +           +       IE+YVD    +   + GD + 
Sbjct: 159 TAGGGGIGLSRCENEAELTVAFDSVQRMGEHFFRDGGAFIERYVDNARHVEVQIFGDGAG 218

Query: 188 DVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA-FLAHQAIGCRGISRS 246
                 V         ++  +       PA +     +     A     +++  R     
Sbjct: 219 -----RVLALGERDCSVQRRNQKVIEETPAPLLPAATRAALLAAAVQLGESVNYRSAGTV 273

Query: 247 DFLFDPLSRKVFWLEINV 264
           +F++DP     ++LE+N 
Sbjct: 274 EFIYDPARDSFYFLEVNT 291


>gi|238911126|ref|ZP_04654963.1| carbamoyl phosphate synthase large subunit [Salmonella enterica
           subsp. enterica serovar Tennessee str. CDC07-0191]
          Length = 1075

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 98/278 (35%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D +              V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +    Q +LE   +    +   A   + D+ R    +   G+    S +
Sbjct: 89  TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDIAMKKIGLDTARSGI 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     +     +  P +I+P       G  +    +       +    +  ++LLI++
Sbjct: 149 AHTMEEALAVAADVGFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTNELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + +   +   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIEN----FDAMGIHTGDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RNASMAVLREIGVETGGSNVQFAVNPKNGRLIVIEMNP 302



 Score = 61.7 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/197 (14%), Positives = 74/197 (37%), Gaps = 10/197 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           LE   +P   +   A   + D+ R +  V    +    +  V      ++    I  P V
Sbjct: 654 LEAAGVPVIGTSPDAIDRAEDRERFQHAVDRLKLKQPANATVTAIEQAVEKAKEIGYPLV 713

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  +  +      + S ++   +L+++++ D +E+    + D  + 
Sbjct: 714 VRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDRFLDDAVEVDVDAICDGEMV 773

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           +    +   +    +    S +S   LPA  +  +I   +++        +  RG+    
Sbjct: 774 LIGGIMEHIE----QAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRGLMNVQ 829

Query: 248 FLFDPLSRKVFWLEINV 264
           F       +V+ +E+N 
Sbjct: 830 FAV--KDNEVYLIEVNP 844


>gi|224581907|ref|YP_002635705.1| carbamoyl phosphate synthase large subunit [Salmonella enterica
           subsp. enterica serovar Paratyphi C strain RKS4594]
 gi|224466434|gb|ACN44264.1| carbamoyl-phosphate synthase large subunit [Salmonella enterica
           subsp. enterica serovar Paratyphi C strain RKS4594]
          Length = 1075

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 98/278 (35%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D +              V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +    Q +LE   +    +   A   + D+ R    +   G+    S +
Sbjct: 89  TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDIAMKKIGLDTARSGI 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     +     +  P +I+P       G  +    +       +    +  ++LLI++
Sbjct: 149 AHTMEEALAVAADVGFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTNELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + +   +   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIEN----FDAMGIHTGDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RNASMAVLREIGVETGGSNVQFAVNPKNGRLIVIEMNP 302



 Score = 61.7 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/197 (14%), Positives = 74/197 (37%), Gaps = 10/197 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           LE   +P   +   A   + D+ R +  V    +    +  V      ++    I  P V
Sbjct: 654 LEAAGVPVIGTSPDAIDRAEDRERFQHAVDRLKLKQPANATVTAIEQAVEKAKEIGYPLV 713

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  +  +      + S ++   +L+++++ D +E+    + D  + 
Sbjct: 714 VRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDRFLDDAVEVDVDAICDGEMV 773

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           +    +   +    +    S +S   LPA  +  +I   +++        +  RG+    
Sbjct: 774 LIGGIMEHIE----QAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRGLMNVQ 829

Query: 248 FLFDPLSRKVFWLEINV 264
           F       +V+ +E+N 
Sbjct: 830 FAV--KDNEVYLIEVNP 844


>gi|161612394|ref|YP_001586359.1| carbamoyl phosphate synthase large subunit [Salmonella enterica
           subsp. enterica serovar Paratyphi B str. SPB7]
 gi|168234815|ref|ZP_02659873.1| carbamoyl-phosphate synthase, large subunit [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. SL480]
 gi|168262261|ref|ZP_02684234.1| carbamoyl-phosphate synthase, large subunit [Salmonella enterica
           subsp. enterica serovar Hadar str. RI_05P066]
 gi|168464396|ref|ZP_02698299.1| carbamoyl-phosphate synthase, large subunit [Salmonella enterica
           subsp. enterica serovar Newport str. SL317]
 gi|194735374|ref|YP_002113082.1| carbamoyl phosphate synthase large subunit [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|205351409|ref|YP_002225210.1| carbamoyl phosphate synthase large subunit [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 287/91]
 gi|207855581|ref|YP_002242232.1| carbamoyl phosphate synthase large subunit [Salmonella enterica
           subsp. enterica serovar Enteritidis str. P125109]
 gi|161361758|gb|ABX65526.1| hypothetical protein SPAB_00083 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194710876|gb|ACF90097.1| carbamoyl-phosphate synthase, large subunit [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|195632923|gb|EDX51377.1| carbamoyl-phosphate synthase, large subunit [Salmonella enterica
           subsp. enterica serovar Newport str. SL317]
 gi|197291819|gb|EDY31169.1| carbamoyl-phosphate synthase, large subunit [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. SL480]
 gi|205271190|emb|CAR35977.1| carbamoyl-phosphate synthase large chain [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 287/91]
 gi|205348866|gb|EDZ35497.1| carbamoyl-phosphate synthase, large subunit [Salmonella enterica
           subsp. enterica serovar Hadar str. RI_05P066]
 gi|206707384|emb|CAR31657.1| carbamoyl-phosphate synthase large chain [Salmonella enterica
           subsp. enterica serovar Enteritidis str. P125109]
 gi|322615889|gb|EFY12806.1| carbamoyl phosphate synthase large subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315996572]
 gi|322620674|gb|EFY17534.1| carbamoyl phosphate synthase large subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-1]
 gi|322623975|gb|EFY20812.1| carbamoyl phosphate synthase large subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-3]
 gi|322627423|gb|EFY24214.1| carbamoyl phosphate synthase large subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-4]
 gi|322630730|gb|EFY27494.1| carbamoyl phosphate synthase large subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-1]
 gi|322638050|gb|EFY34751.1| carbamoyl phosphate synthase large subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-2]
 gi|322640534|gb|EFY37185.1| carbamoyl phosphate synthase large subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. 531954]
 gi|322647674|gb|EFY44159.1| carbamoyl phosphate synthase large subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           NC_MB110209-0054]
 gi|322648381|gb|EFY44836.1| carbamoyl phosphate synthase large subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. OH_2009072675]
 gi|322656942|gb|EFY53228.1| carbamoyl phosphate synthase large subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           CASC_09SCPH15965]
 gi|322657347|gb|EFY53619.1| carbamoyl phosphate synthase large subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. 19N]
 gi|322663667|gb|EFY59867.1| carbamoyl phosphate synthase large subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. 81038-01]
 gi|322666500|gb|EFY62678.1| carbamoyl phosphate synthase large subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. MD_MDA09249507]
 gi|322672341|gb|EFY68453.1| carbamoyl phosphate synthase large subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. 414877]
 gi|322676347|gb|EFY72418.1| carbamoyl phosphate synthase large subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. 366867]
 gi|322679560|gb|EFY75605.1| carbamoyl phosphate synthase large subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. 413180]
 gi|322686111|gb|EFY82095.1| carbamoyl phosphate synthase large subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. 446600]
 gi|323194955|gb|EFZ80141.1| carbamoyl phosphate synthase large subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609458-1]
 gi|323200136|gb|EFZ85223.1| carbamoyl phosphate synthase large subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556150-1]
 gi|323201043|gb|EFZ86112.1| carbamoyl phosphate synthase large subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609460]
 gi|323209440|gb|EFZ94373.1| carbamoyl phosphate synthase large subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. 507440-20]
 gi|323212308|gb|EFZ97132.1| carbamoyl phosphate synthase large subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556152]
 gi|323216613|gb|EGA01339.1| carbamoyl phosphate synthase large subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB101509-0077]
 gi|323219343|gb|EGA03829.1| carbamoyl phosphate synthase large subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB102109-0047]
 gi|323225759|gb|EGA09979.1| carbamoyl phosphate synthase large subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB110209-0055]
 gi|323228700|gb|EGA12829.1| carbamoyl phosphate synthase large subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB111609-0052]
 gi|323236686|gb|EGA20762.1| carbamoyl phosphate synthase large subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009083312]
 gi|323239813|gb|EGA23860.1| carbamoyl phosphate synthase large subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009085258]
 gi|323242139|gb|EGA26168.1| carbamoyl phosphate synthase large subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315731156]
 gi|323249436|gb|EGA33352.1| carbamoyl phosphate synthase large subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2009159199]
 gi|323252229|gb|EGA36080.1| carbamoyl phosphate synthase large subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008282]
 gi|323256680|gb|EGA40410.1| carbamoyl phosphate synthase large subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008283]
 gi|323261286|gb|EGA44873.1| carbamoyl phosphate synthase large subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008284]
 gi|323265534|gb|EGA49030.1| carbamoyl phosphate synthase large subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008285]
 gi|323271678|gb|EGA55096.1| carbamoyl phosphate synthase large subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008287]
 gi|326626431|gb|EGE32774.1| carbamoyl phosphate synthase large subunit [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 9]
          Length = 1075

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 98/278 (35%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D +              V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +    Q +LE   +    +   A   + D+ R    +   G+    S +
Sbjct: 89  TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDIAMKKIGLDTARSGI 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     +     +  P +I+P       G  +    +       +    +  ++LLI++
Sbjct: 149 AHTMEEALAVAADVGFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTNELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + +   +   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIEN----FDAMGIHTGDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RNASMAVLREIGVETGGSNVQFAVNPKNGRLIVIEMNP 302



 Score = 61.7 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/197 (14%), Positives = 74/197 (37%), Gaps = 10/197 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           LE   +P   +   A   + D+ R +  V    +    +  V      ++    I  P V
Sbjct: 654 LEAAGVPVIGTSPDAIDRAEDRERFQHAVDRLKLKQPANATVTAIEQAVEKAKEIGYPLV 713

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  +  +      + S ++   +L+++++ D +E+    + D  + 
Sbjct: 714 VRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDRFLDDAVEVDVDAICDGEMV 773

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           +    +   +    +    S +S   LPA  +  +I   +++        +  RG+    
Sbjct: 774 LIGGIMEHIE----QAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRGLMNVQ 829

Query: 248 FLFDPLSRKVFWLEINV 264
           F       +V+ +E+N 
Sbjct: 830 FAV--KDNEVYLIEVNP 844


>gi|134085958|ref|NP_001076978.1| propionyl-CoA carboxylase alpha chain, mitochondrial [Bos taurus]
 gi|133778161|gb|AAI23877.1| PCCA protein [Bos taurus]
          Length = 741

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 74/221 (33%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      L   ++ +      A     DK+ SK +     V   P    
Sbjct: 138 AVHPGYGFLSENKEFAKRLAAEDVIFIGPDTHAIQAMGDKIESKLLAKKAKVNTIPGFDG 197

Query: 112 LVNRFTMDS--QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGD 164
           +V            I  P +IK   GG   G+ +   D+             +SS+   D
Sbjct: 198 VVKDADEAVRIAREIGYPVMIKASAGGGGKGMRIAWDDEETRDGFRFSSQEAASSFG-DD 256

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           +LLIE+++D    +   V+GD   +   +   +        K             +  + 
Sbjct: 257 RLLIEKFIDNPRHIEIQVLGDKHGNALWLNERECSIQRRNQK----VVEEAPSIFLDSET 312

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +   A    +A+        +FL D      ++LE+N 
Sbjct: 313 RRAMGEQAVALAKAVNYSSAGTVEFLVDSKKN-FYFLEMNT 352


>gi|110668803|ref|YP_658614.1| biotin carboxylase 1, acyl-CoA carboxylase, alpha subunit 2
           [Haloquadratum walsbyi DSM 16790]
 gi|109626550|emb|CAJ53013.1| biotin carboxylase 1, acyl-CoA carboxylase, alpha subunit 2
           [Haloquadratum walsbyi DSM 16790]
          Length = 614

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 80/221 (36%), Gaps = 20/221 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+    A +E  ++ +      A A   +K +++ ++ S  VPV P    
Sbjct: 77  AIHPGYGFLAENATFAAAVESTDMTWIGPSSDAMAQLGEKTKARSLMQSADVPVVPGTTD 136

Query: 114 NRFTMDSQHLI----SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS----SSWNHGDQ 165
              +      I      P  IK   GG   G+ V+++   +   L  +     ++   D 
Sbjct: 137 PVESASEVESIAAEYGYPVAIKAEGGGGGRGLQVVRETDDVESKLETAQREGEAYFDNDS 196

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           + +E+Y+D    +   ++ D   +     V         L+          P+  +  D+
Sbjct: 197 VYVEKYLDEPRHIEVQIIADHHGN-----VRHLGERDCSLQRRHQKVIEEAPSPALSPDL 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             E+   A    QA         +FL      + +++E+N 
Sbjct: 252 RDEIGEAARRGVQAAAYTNAGTVEFLV--EDGEFYFMEVNT 290


>gi|91205284|ref|YP_537639.1| Acetyl-CoA carboxylase, biotin carboxylase [Rickettsia bellii
           RML369-C]
 gi|157827366|ref|YP_001496430.1| Acetyl-CoA carboxylase, biotin carboxylase [Rickettsia bellii OSU
           85-389]
 gi|91068828|gb|ABE04550.1| Acetyl-CoA carboxylase, biotin carboxylase [Rickettsia bellii
           RML369-C]
 gi|157802670|gb|ABV79393.1| Acetyl-CoA carboxylase, biotin carboxylase [Rickettsia bellii OSU
           85-389]
          Length = 665

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 34/221 (15%), Positives = 75/221 (33%), Gaps = 17/221 (7%)

Query: 56  NVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
           N +H  +G   E+     +L+   +              DK+ +K++    GV   P  +
Sbjct: 80  NAVHPGYGFLSENPNFANVLKREGVVLIGPNAATIKKMGDKIEAKKIAIEAGVSTVPGYM 139

Query: 113 VN----RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN----HGD 164
                 +  +D    I  P ++K   GG   G+ ++     +      +          D
Sbjct: 140 GTINDVKQAIDIAKEIGFPVIVKAAAGGGGRGMRMVNNPSEMANAFESAKLEAGNSFSDD 199

Query: 165 QLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           +L IE+ +     +   ++ D   +   +   +     +  K           + I  +I
Sbjct: 200 RLFIEKLIQRPRHIEIQLLADQYGNSVCLGERECSIQRHHQK----VIEEAPSSFITEEI 255

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +E+ R      + +G       +F+ D      ++LE+N 
Sbjct: 256 RQEMYRQVISLSKKVGYYSAGTVEFIVDSEKN-FYFLEMNT 295


>gi|62178631|ref|YP_215048.1| carbamoyl phosphate synthase large subunit [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|62126264|gb|AAX63967.1| carbamoyl-phosphate synthase, large subunit [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|322713083|gb|EFZ04654.1| carbamoyl phosphate synthase large subunit [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. A50]
          Length = 1075

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 98/278 (35%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D +              V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +    Q +LE   +    +   A   + D+ R    +   G+    S +
Sbjct: 89  TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDIAMKKIGLDTARSGI 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     +     +  P +I+P       G  +    +       +    +  ++LLI++
Sbjct: 149 AHTMEEALAVAADVGFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTNELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + +   +   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIEN----FDAMGIHTGDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RNASMAVLREIGVETGGSNVQFAVNPKNGRLIVIEMNP 302



 Score = 60.9 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/197 (14%), Positives = 74/197 (37%), Gaps = 10/197 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           LE   +P   +   A   + D+ R +  V    +    +  V      ++    I  P V
Sbjct: 654 LEAAGVPVIGTSPDAIDRAEDRERFQHAVDRLKLKQPANATVTAIEQAVEKAKEIGYPLV 713

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  +  +      + S ++   +L+++++ D +E+    + D  + 
Sbjct: 714 VRPSYVLGGRAMEIVYDEADLCRYFQTAVSVSNDAPVLLDRFLDDAVEVDVDAICDGEMV 773

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           +    +   +    +    S +S   LPA  +  +I   +++        +  RG+    
Sbjct: 774 LIGGIMEHIE----QAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRGLMNVQ 829

Query: 248 FLFDPLSRKVFWLEINV 264
           F       +V+ +E+N 
Sbjct: 830 FAV--KDNEVYLIEVNP 844


>gi|56412339|ref|YP_149414.1| carbamoyl phosphate synthase large subunit [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. ATCC 9150]
 gi|197361276|ref|YP_002140911.1| carbamoyl phosphate synthase large subunit [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. AKU_12601]
 gi|56126596|gb|AAV76102.1| carbamoyl-phosphate synthase large chain [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. ATCC 9150]
 gi|197092751|emb|CAR58175.1| carbamoyl-phosphate synthase large chain [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. AKU_12601]
          Length = 1075

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 98/278 (35%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D +              V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +    Q +LE   +    +   A   + D+ R    +   G+    S +
Sbjct: 89  TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDIAMKKIGLDTARSGI 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     +     +  P +I+P       G  +    +       +    +  ++LLI++
Sbjct: 149 AHTMEEALAVAADVGFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTNELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + +   +   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIEN----FDAMGIHTGDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RNASMAVLREIGVETGGSNVQFAVNPKNGRLIVIEMNP 302



 Score = 61.7 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/197 (14%), Positives = 74/197 (37%), Gaps = 10/197 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           LE   +P   +   A   + D+ R +  V    +    +  V      ++    I  P V
Sbjct: 654 LEAAGVPVIGTSPDAIDRAEDRERFQHAVDRLKLKQPANATVTAIEQAVEKAKEIGYPLV 713

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  +  +      + S ++   +L+++++ D +E+    + D  + 
Sbjct: 714 VRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDRFLDDAVEVDVDAICDGEMV 773

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           +    +   +    +    S +S   LPA  +  +I   +++        +  RG+    
Sbjct: 774 LIGGIMEHIE----QAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRGLMNVQ 829

Query: 248 FLFDPLSRKVFWLEINV 264
           F       +V+ +E+N 
Sbjct: 830 FAV--KDNEVYLIEVNP 844


>gi|16763457|ref|NP_459072.1| carbamoyl phosphate synthase large subunit [Salmonella enterica
           subsp. enterica serovar Typhimurium str. LT2]
 gi|167989925|ref|ZP_02571025.1| carbamoyl-phosphate synthase, large subunit [Salmonella enterica
           subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|197262871|ref|ZP_03162945.1| carbamoyl-phosphate synthase, large subunit [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA23]
 gi|20143903|sp|P14846|CARB_SALTY RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|16418563|gb|AAL19031.1| carbamoyl-phosphate synthase, large subunit [Salmonella enterica
           subsp. enterica serovar Typhimurium str. LT2]
 gi|197241126|gb|EDY23746.1| carbamoyl-phosphate synthase, large subunit [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA23]
 gi|205331328|gb|EDZ18092.1| carbamoyl-phosphate synthase, large subunit [Salmonella enterica
           subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|261245300|emb|CBG23086.1| carbamoyl-phosphate synthase large chain [Salmonella enterica
           subsp. enterica serovar Typhimurium str. D23580]
 gi|267991730|gb|ACY86615.1| carbamoyl phosphate synthase large subunit [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 14028S]
 gi|301156698|emb|CBW16169.1| carbamoyl-phosphate synthase large chain [Salmonella enterica
           subsp. enterica serovar Typhimurium str. SL1344]
 gi|312911037|dbj|BAJ35011.1| carbamoyl phosphate synthase large subunit [Salmonella enterica
           subsp. enterica serovar Typhimurium str. T000240]
 gi|321222364|gb|EFX47436.1| Carbamoyl-phosphate synthase large chain [Salmonella enterica
           subsp. enterica serovar Typhimurium str. TN061786]
 gi|323128385|gb|ADX15815.1| carbamoyl phosphate synthase large subunit [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 4/74]
 gi|332987019|gb|AEF06002.1| carbamoyl phosphate synthase large subunit [Salmonella enterica
           subsp. enterica serovar Typhimurium str. UK-1]
          Length = 1075

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 98/278 (35%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D +              V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +    Q +LE   +    +   A   + D+ R    +   G+    S +
Sbjct: 89  TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDIAMKKIGLDTARSGI 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     +     +  P +I+P       G  +    +       +    +  ++LLI++
Sbjct: 149 AHTMEEALAVAADVGFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTNELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + +   +   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIEN----FDAMGIHTGDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RNASMAVLREIGVETGGSNVQFAVNPKNGRLIVIEMNP 302



 Score = 61.7 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/197 (14%), Positives = 74/197 (37%), Gaps = 10/197 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           LE   +P   +   A   + D+ R +  V    +    +  V      ++    I  P V
Sbjct: 654 LEAAGVPVIGTSPDAIDRAEDRERFQHAVDRLKLKQPANATVTAIEQAVEKAKEIGYPLV 713

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  +  +      + S ++   +L+++++ D +E+    + D  + 
Sbjct: 714 VRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDRFLDDAVEVDVDAICDGEMV 773

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           +    +   +    +    S +S   LPA  +  +I   +++        +  RG+    
Sbjct: 774 LIGGIMEHIE----QAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRGLMNVQ 829

Query: 248 FLFDPLSRKVFWLEINV 264
           F       +V+ +E+N 
Sbjct: 830 FAV--KDNEVYLIEVNP 844


>gi|126175036|ref|YP_001051185.1| carbamoyl-phosphate synthase L chain ATP-binding [Shewanella
           baltica OS155]
 gi|125998241|gb|ABN62316.1| 3-methylcrotonoyl-CoA carboxylase, alpha subunit [Shewanella
           baltica OS155]
          Length = 680

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 43/222 (19%), Positives = 81/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       E   I +   G  A      K  +K ++++  VP+ P    
Sbjct: 82  AIHPGYGFLSENADFARKCEAAGIAFVGPGSDAIDAMGSKSAAKSIMTAANVPLVPGYHG 141

Query: 114 NRFTM----DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGD 164
           +  T          I  P +IK   GG   G+ +++ +  I   +       +SS+   D
Sbjct: 142 DDQTDATLKAEALKIGFPMLIKAAYGGGGKGMRIVENEGEIMEAVNSARREAASSFG-ND 200

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
           +LL+E+Y+     +   V  D   +   ++           K          PA  +   
Sbjct: 201 KLLMERYLRQPRHVEVQVFADTFGNAIYLSDRDCSIQRRHQK-----VVEEAPAPGLSDA 255

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +  ++   A  A +AI   G    +FL D      +++E+N 
Sbjct: 256 LRAQMGEAAVAAAKAIDYVGAGTVEFLLDT-DNSFYFMEMNT 296


>gi|226942368|ref|YP_002797441.1| pyruvate carboxylase subunit A [Azotobacter vinelandii DJ]
 gi|226717295|gb|ACO76466.1| pyruvate carboxylase subunit A [Azotobacter vinelandii DJ]
          Length = 471

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 34/221 (15%), Positives = 73/221 (33%), Gaps = 20/221 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            LH  +G   E+  +  I     I +            DK  +++ + + GVP  P    
Sbjct: 76  ALHPGYGFLSENAELAEICAERGIKFIGPSASVIRRMGDKTEARRSMIAAGVPCTPGTEG 135

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGD 164
            +      +     I  P ++K   GG   GI        +           + ++   +
Sbjct: 136 NVADLAEALLEAERIGYPVMLKATSGGGGRGIRRCNSAAELENAYPRVISEATKAFGSAE 195

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDI 223
             L +  V+   +   V+ D     +             ++  +     + P  ++  + 
Sbjct: 196 VFLEKCIVNPKHIEAQVLAD-----SFGNTVHLFERDCSIQRRNQKLIEIAPSPQLTPEQ 250

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              +  LA  A +A+G       +FL      +V+++E+N 
Sbjct: 251 RAYIGDLAVRAARAVGYENAGTVEFLL--ADGEVYFMEMNT 289


>gi|330444967|ref|ZP_08308621.1| acetyl-CoA carboxylase, biotin carboxylase [Photobacterium
           leiognathi subsp. mandapamensis svers.1.1.]
 gi|328493085|dbj|GAA03118.1| acetyl-CoA carboxylase, biotin carboxylase [Photobacterium
           leiognathi subsp. mandapamensis svers.1.1.]
          Length = 447

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 78/222 (35%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      +E     +         L  DK+ +   +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAEQVERSGFIFVGPKAETIRLMGDKVSAITAMKKAGVPCVPGSDG 136

Query: 114 NRFTMDSQHL-----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GD 164
                ++++      I  P +IK   GG   G+ V++ +  +   +  + +        D
Sbjct: 137 PLDDDEAKNKSFAKRIGYPVIIKASGGGGGRGMRVVRGENELTEAIAMTRAEAKSCFNND 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+Y++    +   V+ D       +            K          PA  I  +
Sbjct: 197 MVYMEKYLENPRHIEVQVLADGQGGAIHLGERDCSMQRRHQK-----VVEEAPAPGITEE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + K +      A   IG RG    +FL+   + + +++E+N 
Sbjct: 252 MRKYIGERCTRACIEIGYRGAGTFEFLY--ENGEFYFIEMNT 291


>gi|328472222|gb|EGF43092.1| acetyl-CoA carboxylase biotin carboxylase subunit [Vibrio
           parahaemolyticus 10329]
          Length = 447

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 39/222 (17%), Positives = 81/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         +  DK+ +   +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAEQVERSGFIFVGPKADTIRMMGDKVSAITAMKKAGVPCVPGSDG 136

Query: 112 -LVNRFTMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
            L N    +  H   I  P +IK   GG   G+ V++ ++ +   +     ++ +  + D
Sbjct: 137 PLDNDEDKNKAHAKRIGYPVIIKASGGGGGRGMRVVRAEKDLVQAIAMTRAEAKAAFNND 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E++++    +   V+ D       +            K          PA  I  +
Sbjct: 197 MVYMEKFLENPRHVEVQVIADGQGGAIHLGERDCSMQRRHQK-----VVEEAPAPGITEE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + K +      A   IG RG    +FL+   + + +++E+N 
Sbjct: 252 MRKYIGERCTRACVEIGYRGAGTFEFLY--ENGEFYFIEMNT 291


>gi|241765124|ref|ZP_04763113.1| Carbamoyl-phosphate synthase L chain ATP-binding [Acidovorax
           delafieldii 2AN]
 gi|241365241|gb|EER60081.1| Carbamoyl-phosphate synthase L chain ATP-binding [Acidovorax
           delafieldii 2AN]
          Length = 684

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 76/220 (34%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+       E   I +      + A   DK+ SK++ +   V   P    
Sbjct: 77  AVHPGYGFLSENEAFAKRCEDEGIAFIGPKAYSIAAMGDKIASKKLANEAKVNTIPGYND 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
            I      ++    I  P +IK   GG   G+ V   D+           ++ +    D+
Sbjct: 137 AIAGPEQAVEIAKGIGYPVMIKASAGGGGKGLRVAFNDKEAFEGFASCQNEARNSFGDDR 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE++V +   +   V+GD+  +V  +   +        K             I     
Sbjct: 197 IFIEKFVQEPRHIEIQVLGDSHGNVIYLNERECSIQRRHQK----VIEEAPSPFISDATR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K +   A    +A+  +     +F      +  ++LE+N 
Sbjct: 253 KAMGEQAVALAKAVKYQSAGTVEF-VVGKDQDFYFLEMNT 291


>gi|204927019|ref|ZP_03218221.1| carbamoyl-phosphate synthase, large subunit [Salmonella enterica
           subsp. enterica serovar Javiana str. GA_MM04042433]
 gi|204323684|gb|EDZ08879.1| carbamoyl-phosphate synthase, large subunit [Salmonella enterica
           subsp. enterica serovar Javiana str. GA_MM04042433]
          Length = 1075

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 98/278 (35%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D +              V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +    Q +LE   +    +   A   + D+ R    +   G+    S +
Sbjct: 89  TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDIAMKKIGLDTARSGI 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     +     +  P +I+P       G  +    +       +    +  ++LLI++
Sbjct: 149 AHTMEEALAVAADVGFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTNELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + +   +   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIEN----FDAMGIHTGDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RNASMAVLREIGVETGGSNVQFAVNPKNGRLIVIEMNP 302



 Score = 61.7 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/197 (14%), Positives = 74/197 (37%), Gaps = 10/197 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           LE   +P   +   A   + D+ R +  V    +    +  V      ++    I  P V
Sbjct: 654 LEAAGVPVIGTSPDAIDRAEDRERFQHAVDRLKLKQPANATVTAIEQAVEKAKEIGYPLV 713

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  +  +      + S ++   +L+++++ D +E+    + D  + 
Sbjct: 714 VRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDRFLDDAVEVDVDAICDGEMV 773

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           +    +   +    +    S +S   LPA  +  +I   +++        +  RG+    
Sbjct: 774 LIGGIMEHIE----QAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRGLMNVQ 829

Query: 248 FLFDPLSRKVFWLEINV 264
           F       +V+ +E+N 
Sbjct: 830 FAV--KDNEVYLIEVNP 844


>gi|229541175|ref|ZP_04430235.1| carbamoyl-phosphate synthase, large subunit [Bacillus coagulans
           36D1]
 gi|229325595|gb|EEN91270.1| carbamoyl-phosphate synthase, large subunit [Bacillus coagulans
           36D1]
          Length = 1066

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 41/268 (15%), Positives = 100/268 (37%), Gaps = 30/268 (11%)

Query: 25  ALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFNVLHGNFG 63
           AL++ G+ V  ++ + +                     V  ++   +PD     L G  G
Sbjct: 36  ALKEEGYHVVLVNSNPATIMTDTEMADKIYIEPLTPAFVARIIRKERPDALLPTLGGQTG 95

Query: 64  EDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
            +  ++     IL+   +    + + A   + D+   ++++   G PV  S++++     
Sbjct: 96  LNIAMELAKSGILDEYGVEVLGTRLGAIEQAEDREAFRELMGKLGEPVPDSMIIHTLEEA 155

Query: 120 SQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IE 176
            +       P +++P       G  + + ++ +   +      +   Q L+E+ + G  E
Sbjct: 156 YRFIEKAGYPVIVRPAYTLGGTGGGICRNEEELIETVSGGLRQSPVHQCLLEKSIAGFKE 215

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +   VM D+      I V   +       ++  +        +    Y+ ++ ++    +
Sbjct: 216 IEYEVMRDSEDHA--IVVCNMENIDPVGVHTGDSIVVAPSQTLSDKEYQMLRNVSLKIIR 273

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINV 264
           A+G  G     F  DP S + + +E+N 
Sbjct: 274 ALGIEGGCNVQFALDPDSFQYYVIEVNP 301



 Score = 69.8 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 29/218 (13%), Positives = 78/218 (35%), Gaps = 14/218 (6%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGV--PVCPSILVNRFTMDSQHLISPPYV 129
           L    +    + +     + D+ +   +++  G+  P+  +       +     I  P +
Sbjct: 644 LANRGVRILGTSLENLDRAEDRDKFDHLLNRLGIKRPLGKTGTSAEEAVRIAAEIGYPVL 703

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           ++P        + ++  ++ +   +  +   +    +LI++YV G E    V+ D     
Sbjct: 704 VRPSFVLGGRAMEIVYHEEDLRQYMKHAVKVSPNQPVLIDRYVTGQEFEVDVIADGR--- 760

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
            +I +P    +       S +S  V P  ++   +  E+          +  +G+    F
Sbjct: 761 -DILIPGIVEHIERAGVHSGDSIAVYPPQRLSEALKAEMVETCRKLASELEIKGLMNIQF 819

Query: 249 LFDPLSRKVFWLEIN-----VQPGMTPVSIFPEMAAYA 281
           +      ++F +E+N       P ++ ++  P      
Sbjct: 820 IVSH--NELFVIEVNPRSSRTVPFLSKITDVPMAKLAM 855


>gi|256828679|ref|YP_003157407.1| carbamoyl-phosphate synthase L chain ATP- binding [Desulfomicrobium
           baculatum DSM 4028]
 gi|256577855|gb|ACU88991.1| Carbamoyl-phosphate synthase L chain ATP- binding [Desulfomicrobium
           baculatum DSM 4028]
          Length = 1230

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 39/244 (15%), Positives = 88/244 (36%), Gaps = 25/244 (10%)

Query: 35  QIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSM 91
            +D+D+ + L  A          +H  +G   ED           I +      A  L  
Sbjct: 75  YLDIDKIISLAKARGVA-----AIHPGWGFASEDDSFPLKCAAAGIIFIGPTSEAMRLLG 129

Query: 92  DKMRSKQVVSSCGVPVCP---SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQ 148
           +K++ + +    G+PV P     +           I  P ++K   GG   GI  +  + 
Sbjct: 130 NKVQVRILAQKLGIPVVPGSEGAVSVEEAKVVATEIGLPVMLKAEGGGGGRGIYEVFSED 189

Query: 149 SIPLDLLQSSSWNH----GDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYE 203
            +    +++S+         +L +E+ +     +   V+ D   +V        D     
Sbjct: 190 QLADAFIKASTLAQASFGNPRLYVERLLTSIRHIEIQVIADKYGNVFAF-----DERDCT 244

Query: 204 LKYSSLNSTHVLP---AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260
           ++ +      + P     +  ++ ++++  +    +A+G   +   +FL D   R  + +
Sbjct: 245 VQRNHQKLVEITPSPWPGMTEELREQLKEYSRQLVRAVGYHSLCTVEFLVDAEGRA-YLI 303

Query: 261 EINV 264
           E+N 
Sbjct: 304 EVNT 307


>gi|227537657|ref|ZP_03967706.1| carbamoyl-phosphate synthase [Sphingobacterium spiritivorum ATCC
           33300]
 gi|227242488|gb|EEI92503.1| carbamoyl-phosphate synthase [Sphingobacterium spiritivorum ATCC
           33300]
          Length = 938

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 28/218 (12%), Positives = 78/218 (35%), Gaps = 14/218 (6%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYV 129
           LE + +    +      L+ D+ R   ++ S  +P     +           + +  P +
Sbjct: 651 LEAIGVKIIGTSFQDMDLAEDRGRFSDLLKSLDIPYPKYGVAESAEEAIVVANQVGYPVL 710

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD--GIELTCGVMGDASL 187
           ++P       G+ ++  D+ +   ++       G+++LI+ ++D      +  +     +
Sbjct: 711 VRPSYVLGGQGMSIVINDEDLEKAVVNLLKNLPGNRVLIDHFLDRAEEAESDSICDGEEV 770

Query: 188 DVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
            +  +         +    S  +S  + P  +  ++  +++  +    +A+  +G+    
Sbjct: 771 HIIGMMEHIEPAGIH----SGDSSAVLPPFSLSQNVQDKMEEYSKKLAKALNVKGLLNIQ 826

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285
           F        VF +E N +   T     P +A      +
Sbjct: 827 FAV--KDENVFVIEANPRASRT----VPFIAKAYDVPY 858



 Score = 60.9 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 50/252 (19%), Positives = 97/252 (38%), Gaps = 34/252 (13%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG   A +L++ G +VS I+ +                      S+  VL     D    
Sbjct: 29  SGSQAALSLKEEGIEVSIINSNPATIMTDKVVADNVYLLPLTCESIEEVLQKHNIDAVLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +    + I E  +I      + A   + ++   +Q++   GV V  S +
Sbjct: 89  TMGGQTALNLCIEASERGIWEKYDIKVIGVDVAAIEKTENREAFRQLMVDIGVGVATSKI 148

Query: 113 VNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            N F    ++   I  P VI+P    +  G   + K +     L +    +   ++L+EQ
Sbjct: 149 ANSFLEGKEAAQEIGYPLVIRPSYTLAGTGGGFVHKKEDFDAALNRGLHASPTHEVLVEQ 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            V G  E    ++ DA+ +V  I   ++    ++       +S  V PA  +    Y+++
Sbjct: 209 AVLGWKEFELELLRDANDNVIIICTIEN----FDPMGIHTGDSITVAPAMTLSDRCYQDM 264

Query: 228 QRLAFLAHQAIG 239
           +  A    ++IG
Sbjct: 265 RNQAIKMMRSIG 276


>gi|213647014|ref|ZP_03377067.1| acetyl-CoA carboxylase biotin carboxylase subunit [Salmonella
           enterica subsp. enterica serovar Typhi str. J185]
          Length = 449

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 42/222 (18%), Positives = 81/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         L  DK+ +   +   GVP  P    
Sbjct: 77  AIHPGYGFLSENANFAEQVERSGFIFIGPKADTIRLMGDKVSAITAMKKAGVPTVPGSDG 136

Query: 112 -LVNRFTMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
            L +    +  H   I  P +IK   GG   G+ V++ D  +   +     ++ +    D
Sbjct: 137 PLGDDMNANRAHAKRIGYPVIIKASGGGGGRGMRVVRSDAELAQSISMTKAEAKAAFSND 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+Y++    +   V+ D   +   +A           K          PA  I  +
Sbjct: 197 MVYMEKYLENPRHIEIQVLADGQGNAIYLAERDCSMQRRHQK-----VVEEAPAPGITPE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + + +      A   IG RG    +FLF   + + +++E+N 
Sbjct: 252 LRRYIGERCAKACVDIGYRGAGTFEFLF--ENGEFYFIEMNT 291


>gi|190576068|ref|YP_001973913.1| acetyl-CoA carboxylase biotin carboxylase subunit [Stenotrophomonas
           maltophilia K279a]
 gi|190013990|emb|CAQ47630.1| putative biotin carboxylase [Stenotrophomonas maltophilia K279a]
          Length = 455

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 38/225 (16%), Positives = 82/225 (36%), Gaps = 27/225 (12%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+      +E     +         +  DK+ + + + S GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAERVEESGFIFIGPKADTIRMMGDKVEAIRAMKSAGVPCVPGSGG 136

Query: 111 -----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWN 161
                I+ N         I  P +IK   GG   G+ V+  + S+   +     ++ +  
Sbjct: 137 PLGDDIVAN---TKIAREIGYPVIIKAAGGGGGRGMRVVHAEASLKTSIETTKSEAKAAF 193

Query: 162 HGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-I 219
              ++ +E++++    +   V+ D   +   +            K          PA  I
Sbjct: 194 GNGEVYMEKFLENPRHVEIQVLADGQGNAIHLGERDCSMQRRHQK-----VVEEAPAPGI 248

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +  +++ ++   A   IG RG    +FL+     + +++E+N 
Sbjct: 249 TAEQREQIGKVCTEACVRIGYRGAGTFEFLY--EDGRFYFIEMNT 291


>gi|168186112|ref|ZP_02620747.1| carbamoyl-phosphate synthase, large subunit [Clostridium botulinum
           C str. Eklund]
 gi|169295903|gb|EDS78036.1| carbamoyl-phosphate synthase, large subunit [Clostridium botulinum
           C str. Eklund]
          Length = 1063

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 41/265 (15%), Positives = 99/265 (37%), Gaps = 34/265 (12%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ------ 69
           A+ +AG++   +         D D S  L    L  D   NV+     +  ++Q      
Sbjct: 580 AINNAGYESIMVNNNPETVSTDFDTSDKLYFESLFIDDVMNVIRKENPKGVILQFGGQTS 639

Query: 70  -AILELL---EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ--HL 123
             + E L    +    +   +  L+ D+ + ++++    +       V       +    
Sbjct: 640 VNLAEKLSQRGVNILGTKFESIDLAEDREKFRELLEELNIKTPTGNAVTSIEEAHKVVEK 699

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           +  P +++P        + VI  D+++   + ++ S +    +++++YV G E+    + 
Sbjct: 700 LGYPVIVRPSYVIGGRAMEVIYDDKALEKYMKEAVSLSSEHTIIVDKYVRGTEIEVDAIC 759

Query: 184 DAS---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIG 239
           D     +      + ++  +S        +S  V P   +  D  KE+ +       A+ 
Sbjct: 760 DGEDILMPGIMEHIERTGVHS-------GDSITVYPYMTLSEDTIKELVKNTKKIATALK 812

Query: 240 CRGISRSDFLFDPLSRKVFWLEINV 264
             G+    ++FD     ++ +E+N 
Sbjct: 813 IVGLVNIQYVFDGKD--IYVIEVNP 835



 Score = 47.0 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 34/199 (17%), Positives = 72/199 (36%), Gaps = 7/199 (3%)

Query: 70  AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTMDSQHLISPP 127
            +LE   +        +   + D+   K+++   G P+  S +                P
Sbjct: 106 GVLERNNVKLLGINGESIKKAEDREEFKELMLEIGEPIPESTIAVNMEECKAFVKRHGLP 165

Query: 128 YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDAS 186
            +I+P       G  + +  +            +   Q+L+EQ V G  EL   V+ D  
Sbjct: 166 IIIRPAYTLGGTGGGIAETMEQYLDICELGLKMSPIHQILLEQSVAGWKELEYEVIRDKK 225

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISR 245
            +   I   ++      +   + +S  V P++ +    ++ ++  A    +++   G   
Sbjct: 226 DNCIIICNMEN---IDPVGVHTGDSIVVAPSQTLTDKEHQMLRNSALKIIRSLKIEGGCN 282

Query: 246 SDFLFDPLSRKVFWLEINV 264
             F  DP+S K   +E+N 
Sbjct: 283 IQFALDPISNKYIVIEVNP 301


>gi|28899655|ref|NP_799260.1| acetyl-CoA carboxylase biotin carboxylase subunit [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|153839618|ref|ZP_01992285.1| acetyl-CoA carboxylase, biotin carboxylase [Vibrio parahaemolyticus
           AQ3810]
 gi|260361498|ref|ZP_05774545.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Vibrio
           parahaemolyticus K5030]
 gi|260895469|ref|ZP_05903965.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Vibrio
           parahaemolyticus Peru-466]
 gi|260903323|ref|ZP_05911718.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Vibrio
           parahaemolyticus AQ4037]
 gi|28807907|dbj|BAC61144.1| acetyl-CoA carboxylase, biotin carboxylase [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|149746857|gb|EDM57845.1| acetyl-CoA carboxylase, biotin carboxylase [Vibrio parahaemolyticus
           AQ3810]
 gi|308088071|gb|EFO37766.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Vibrio
           parahaemolyticus Peru-466]
 gi|308109551|gb|EFO47091.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Vibrio
           parahaemolyticus AQ4037]
 gi|308112843|gb|EFO50383.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Vibrio
           parahaemolyticus K5030]
          Length = 447

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 39/222 (17%), Positives = 81/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         +  DK+ +   +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAEQVERSGFIFVGPKADTIRMMGDKVSAITAMKKAGVPCVPGSDG 136

Query: 112 -LVNRFTMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
            L N    +  H   I  P +IK   GG   G+ V++ ++ +   +     ++ +  + D
Sbjct: 137 PLDNDEDKNKAHAKRIGYPVIIKASGGGGGRGMRVVRAEKDLVQAIAMTRAEAKAAFNND 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E++++    +   V+ D       +            K          PA  I  +
Sbjct: 197 IVYMEKFLENPRHVEVQVIADGQGGAIHLGERDCSMQRRHQK-----VVEEAPAPGITEE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + K +      A   IG RG    +FL+   + + +++E+N 
Sbjct: 252 MRKYIGERCTRACVEIGYRGAGTFEFLY--ENGEFYFIEMNT 291


>gi|325475077|gb|EGC78263.1| CarB family protein [Treponema denticola F0402]
          Length = 558

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 51/267 (19%), Positives = 103/267 (38%), Gaps = 36/267 (13%)

Query: 16  LSSGKACASALEDAGFKVSQID----------VDRSVGLVLAHLK--PDLAF----NVLH 59
           L  G A  +A ++   +V  +D           D+   + L  +    DLA     N LH
Sbjct: 15  LMQGPAIRAA-KELDCEVIAVDGNPNAVCAKEADKFFPIDLKDIPALIDLAKSLKENGLH 73

Query: 60  GNF--GEDGLV--QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR 115
           G F    D  V   A+ E   +P     + A+  + DK+  ++     GVP      + +
Sbjct: 74  GVFTAATDFSVSVAAVAESCSLP--GHSLEAARRASDKVLMRECFEKHGVPSPKFTHIFK 131

Query: 116 FTMDS------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
             ++       Q  I  P  +KP     + G  ++     +   L  + +++   + + E
Sbjct: 132 NEINEALQILKQKAIPFPLTVKPADNMGARGCRLVYSQDELRPALEDAVNFSRSGKAIAE 191

Query: 170 QYVDGIELTC-GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           +++DG E +   ++ +  + +  +A     F  Y ++       H +P+    +   E+ 
Sbjct: 192 EFIDGEEFSLEALVINGEIFLNALADRHIFFPPYFVEMG-----HTIPSIKGKEECDELI 246

Query: 229 RLAFLAHQAIGC-RGISRSDFLFDPLS 254
           R+ FL  +A+G   G ++ D       
Sbjct: 247 RVFFLGIKALGLTNGAAKGDIFLRKAD 273


>gi|307565960|ref|ZP_07628419.1| phosphoribosylamine--glycine ligase [Prevotella amnii CRIS 21A-A]
 gi|307345388|gb|EFN90766.1| phosphoribosylamine--glycine ligase [Prevotella amnii CRIS 21A-A]
          Length = 402

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 28/193 (14%), Positives = 72/193 (37%), Gaps = 5/193 (2%)

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGV--PVCPSILVNRFTMDSQHLISPPYVI 130
           E +++P+      A+ +  +K   +Q ++  G   P           ++     S P ++
Sbjct: 87  EKMQLPFQ-CSYKAATILQNKHLFRQFLAENGFNSPKAKGYNNVNEALEDVDFFSWPVIV 145

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190
           KP+    S G+  +++ + +   +  + S  H    +IE++++    + G+      +  
Sbjct: 146 KPVDSAGSKGVSKVERKEDLSEAISYALSEAHNGYFIIEEFLEKEGNSSGIEAYIQGEQV 205

Query: 191 EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR-GISRSDFL 249
                    +          S  + P+ +PL+   E++         +  R GI   +  
Sbjct: 206 LCNDLYDQLFDDNAVNPFTPSAEIWPSSMPLNYQCEIKEELKRLFILLNVRTGIFNVECR 265

Query: 250 FDPLSRKVFWLEI 262
               + K + +E+
Sbjct: 266 VST-NGKAYLMEV 277


>gi|219871954|ref|YP_002476329.1| carbamoyl phosphate synthase large subunit [Haemophilus parasuis
           SH0165]
 gi|219692158|gb|ACL33381.1| carbamoyl phosphate synthase large subunit [Haemophilus parasuis
           SH0165]
          Length = 1066

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 51/278 (18%), Positives = 99/278 (35%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +              DV        R+V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYKVVLVNSNPATIMTDPNMADVTYIEPIEWRTVAKIIEKERPDAILP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      +L+   +    +   A   + D+ R KQ +   G+    S +
Sbjct: 89  TMGGQTALNCALDLSRNGVLKQFNVELIGASEDAIDKAEDRGRFKQAMEKIGLSCPKSFI 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     + +Q  +  P +I+P       G  +            +    +   +LLIEQ
Sbjct: 149 AHTLEEALKAQEAVGFPTLIRPSFTMGGSGGGIAYNRDEFLAICERGFEASPTHELLIEQ 208

Query: 171 YVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            V G  E    V+ D   + +   ++   D           +S  V PA+ +    Y+ +
Sbjct: 209 SVLGWKEYEMEVVRDKEDNCIIVCSIENFDPMGVHT----GDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RNASLAVLREIGVDTGGSNVQFAINPENGEMIVIEMNP 302



 Score = 60.5 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 28/193 (14%), Positives = 77/193 (39%), Gaps = 10/193 (5%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPL 133
            +    +   +   + D+ R ++++    +    +      +  +   + +  P V++P 
Sbjct: 652 GVNIIGTSADSIDAAEDRERFQKILHDLNLKQPANRTARNAQEAVAVANEVGYPLVVRPS 711

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEI 192
                  + ++  D+ +   + ++ S ++   +L++ ++ + IE+    + D    V   
Sbjct: 712 YVLGGRAMQIVYNDEELNKYMREAVSVSNDSPILLDHFLNNAIEVDVDCICDGENMVIGG 771

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
            +   +    +    S +S   LPA  +  +I  E++R       A+G +G+    F   
Sbjct: 772 IMQHVE----QAGIHSGDSACSLPAYSLSGEILDEIRRQTKEMAFALGVKGLMNVQFAV- 826

Query: 252 PLSRKVFWLEINV 264
             +  V+ LE+N 
Sbjct: 827 -QNDVVYVLEVNP 838


>gi|200388769|ref|ZP_03215381.1| carbamoyl-phosphate synthase, large subunit [Salmonella enterica
           subsp. enterica serovar Virchow str. SL491]
 gi|199605867|gb|EDZ04412.1| carbamoyl-phosphate synthase, large subunit [Salmonella enterica
           subsp. enterica serovar Virchow str. SL491]
          Length = 1075

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 98/278 (35%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D +              V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +    Q +LE   +    +   A   + D+ R    +   G+    S +
Sbjct: 89  TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDIAMKKIGLDTARSGI 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     +     +  P +I+P       G  +    +       +    +  ++LLI++
Sbjct: 149 AHTMEEALAVAADVGFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTNELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + +   +   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIEN----FDAMGIHTGDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RNASMAVLREIGVETGGSNVQFAVNPKNGRLIVIEMNP 302



 Score = 61.7 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/197 (14%), Positives = 74/197 (37%), Gaps = 10/197 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           LE   +P   +   A   + D+ R +  V    +    +  V      ++    I  P V
Sbjct: 654 LEAAGVPVIGTSPDAIDRAEDRERFQHAVDRLKLKQPANATVTAIEQAVEKAKEIGYPLV 713

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  +  +      + S ++   +L+++++ D +E+    + D  + 
Sbjct: 714 VRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDRFLDDAVEVDVDAICDGEMV 773

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           +    +   +    +    S +S   LPA  +  +I   +++        +  RG+    
Sbjct: 774 LIGGIMEHIE----QAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRGLMNVQ 829

Query: 248 FLFDPLSRKVFWLEINV 264
           F       +V+ +E+N 
Sbjct: 830 FAV--KDNEVYLIEVNP 844


>gi|56419687|ref|YP_147005.1| carbamoyl phosphate synthase large subunit [Geobacillus
           kaustophilus HTA426]
 gi|56379529|dbj|BAD75437.1| carbamoyl-phosphate synthase(glutamine-hydrolyzing) large chain
           [Geobacillus kaustophilus HTA426]
          Length = 1065

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/218 (13%), Positives = 77/218 (35%), Gaps = 14/218 (6%)

Query: 68  VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC--PSILVNRFTMDSQHLIS 125
           + A LE   +    + +     + D+ + +Q +S  G+P     + +     +     I 
Sbjct: 642 LAAELEARGVRLLGTTLEDLDRAEDRDKFEQALSELGIPKPAGKTAVSVEEAVAIAEEIG 701

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            P +++P        + ++     +   +  +   N    +L+++Y+ G E+    + D 
Sbjct: 702 YPVLVRPSYVLGGRAMEIVYNRGELLHYMEHAVRVNPQHPVLVDRYITGKEVEVDAIADG 761

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGIS 244
              V    +   +           +S  V P + +  ++  ++        + +   G+ 
Sbjct: 762 ETVVIPGIMEHIERAGVHS----GDSIAVYPPQTLSAEVIDKIADYTIRLARGLHIVGLL 817

Query: 245 RSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277
              F+       V+ LE+N       P ++ ++  P  
Sbjct: 818 NIQFVVSGSD--VYVLEVNPRSSRTVPFLSKITGVPMA 853



 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 52/297 (17%), Positives = 115/297 (38%), Gaps = 36/297 (12%)

Query: 25  ALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFNVLHGNFG 63
           AL++ G+KV  ++ + +                     V  ++   +PD     L G  G
Sbjct: 36  ALKEEGYKVILVNSNPATIMTDTEIADKVYMEPLTLDFVARIIRKERPDAILPTLGGQTG 95

Query: 64  EDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
            +  V+     +LE   +    + + A   + D+ + + +++  G PV  S +++     
Sbjct: 96  LNLAVELAKAGVLEECGVEILGTKLEAIEKAEDREQFRALMNELGEPVPESAIIHSLEEA 155

Query: 120 SQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IE 176
                 I  P +++P       G  +   ++ +   +      +   Q L+E+ + G  E
Sbjct: 156 YAFVEQIGYPVIVRPAFTLGGTGGGICTNEEELVEIVSTGLKMSPVHQCLLERSIAGYKE 215

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAH 235
           +   VM DA+ +   I V   +     +   + +S  V P++ +    Y+ ++  +    
Sbjct: 216 IEYEVMRDANDNA--IVVCNMENID-PVGIHTGDSIVVAPSQTLSDREYQLLRNASLKII 272

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +A+G  G        DP S + + +E+N  P ++  S     +   GY   +L   +
Sbjct: 273 RALGIEGGCNVQLALDPDSFRYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAKI 325


>gi|87308406|ref|ZP_01090547.1| carbamoyl-phosphate synthase (glutamine-hydrolyzing) large chain
           [Blastopirellula marina DSM 3645]
 gi|87288963|gb|EAQ80856.1| carbamoyl-phosphate synthase (glutamine-hydrolyzing) large chain
           [Blastopirellula marina DSM 3645]
          Length = 1088

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 52/277 (18%), Positives = 100/277 (36%), Gaps = 33/277 (11%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D D              +  ++A  +PD    
Sbjct: 29  SGTQACKALREEGYEVVLVNSNPATIMTDPDMADRTYIEPLSWEIIEKIIAKERPDALLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G    +  +      +LE   +    +     A + ++ + K  +   G+ VC    
Sbjct: 89  TLGGQTALNLAMELEKHGVLEKYGVEMIGANAAVIAKAEEREQFKAAMEKIGLEVCRGGT 148

Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           V+           I  P V++P       G  +    +     +      +  +++LIE+
Sbjct: 149 VHTIQEARAVLDEIGLPAVVRPSFTMGGSGSAIAYNREEFDSLVRNGLDQSPVNEVLIEE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQ 228
            V G  E    VM D + +V  I   ++      +   + +S  V PA+ +    Y+ ++
Sbjct: 209 SVIGWKEYEMEVMRDVADNVVIICTIENFD---PVGVHTGDSITVAPAQTLSDKEYQRMR 265

Query: 229 RLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
             +    + IG   G S   F  DP S ++  +E+N 
Sbjct: 266 DASLAVIREIGVETGGSNIQFANDPHSDRMIVIEMNP 302



 Score = 65.9 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 34/235 (14%), Positives = 83/235 (35%), Gaps = 25/235 (10%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH--LISPPYV 129
           L    +P   + +     + D+ + +++++  G+    + +    T        +  P +
Sbjct: 659 LATAGVPIIGTSVDTIEAAEDREKFQKLLNQLGLKQPANAIARTMTQARTESAKVGYPSL 718

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + +   D+     + ++     G  +LI++++ D  E+    + D    
Sbjct: 719 VRPSFVLGGRAMEICYDDKQFERYVAEAFLVAQGQPVLIDRFLEDATEVDVDCISDGENV 778

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           V    +   +       +S  ++  + P  +P  +  E++       + +   G+    F
Sbjct: 779 VVAGIMEHIEEAGV---HSGDSACSIPPYSLPGPVVNEIREATVAMARKLKVIGLMNVQF 835

Query: 249 LFDPLSRK--VFWLEIN-----VQP------GMTPVSIFPEMAAYA--GYSFREL 288
                  K  V+ LE+N       P      GM       ++AA    G +  EL
Sbjct: 836 AVKQEDGKMNVYVLEVNPRASRTVPFVAKATGM----QVAKIAAKVMTGMTLPEL 886


>gi|330999320|ref|ZP_08323037.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Parasutterella
           excrementihominis YIT 11859]
 gi|329575178|gb|EGG56729.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Parasutterella
           excrementihominis YIT 11859]
          Length = 452

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 81/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+      +E     +         L  DK+ +KQ +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAERVESSGFVFIGPRPETIRLMGDKVSAKQAMIDAGVPCVPGSGG 136

Query: 111 -ILVNRFTMDS-QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
            +  +   +      +  P +IK   GG   G+ V+  + ++   +     ++ +    D
Sbjct: 137 ALPDDPSEIIKIARSVGYPVIIKASGGGGGRGMKVVHTEAALINAVNTTKQEAKAAFGND 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLD 222
            + +E++++    +   V+ D   +   +            K          PA  IP  
Sbjct: 197 TVYLEKFLENPRHIEIQVLADNFRNAIWLGERDCSMQRRNQK-----VIEESPAIGIPRR 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +++        + IG RG    +FL+   + + +++E+N 
Sbjct: 252 AIEKIGERCAEGCRKIGYRGAGTFEFLY--ENGEFYFIEMNT 291


>gi|300779700|ref|ZP_07089556.1| pyruvate carboxylase [Corynebacterium genitalium ATCC 33030]
 gi|300533810|gb|EFK54869.1| pyruvate carboxylase [Corynebacterium genitalium ATCC 33030]
          Length = 1152

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 38/239 (15%), Positives = 78/239 (32%), Gaps = 17/239 (7%)

Query: 35  QIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKM 94
            +D+  S+         D  +   +G   E   +        I +         L+ DK 
Sbjct: 77  YLDI-ESIIDAAKQTGADAIYPG-YGFLSERAELARRCREEGIKFIGPSAETLDLTGDKA 134

Query: 95  RSKQVVSSCGVPVCPSILVNRFTMDSQHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
            + Q     G+P       +    + +        P  +K + GG   G+  ++K + + 
Sbjct: 135 AAVQAAERAGLPTLKDSEPSSDPAELEKFAGDFEFPVFVKAVAGGGGRGMRFVEKREDLA 194

Query: 152 LDLLQSSSWNH----GDQLLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
               ++S           + IE+  ++   +   +M DA  +V              ++ 
Sbjct: 195 ALAAEASREAEAAFGDPDVYIERAVINPQHIEVQIMADAHGNVV-----HLFERDCSVQR 249

Query: 207 SSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
                  + PA+ I  +  + + + A    + I   G    +FL D     VF  E+N 
Sbjct: 250 RHQKVVEIAPAQHITEEQRQRICQDAVNFSKEINYEGAGTVEFLVDEAGNHVFI-EMNP 307


>gi|298386494|ref|ZP_06996050.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Bacteroides sp.
           1_1_14]
 gi|298260871|gb|EFI03739.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Bacteroides sp.
           1_1_14]
          Length = 503

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 81/220 (36%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       E   + +   G    A    K  +++++   G+P+ P    
Sbjct: 76  AIHPGYGFLSENADFARRCEEEGVIFIGPGADIIAKMGIKTEARKIMREAGLPIVPGTET 135

Query: 114 N----RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN----HGDQ 165
                         +  P ++K L GG   G+ +++ ++     L  S S        D 
Sbjct: 136 PVQGIEEVKKVAKEVGYPIMLKALAGGGGKGMRLVRSEEEAETALRLSQSEAGTSFGNDA 195

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+Y++    +   +MGD   +V  +   +        K             +  +  
Sbjct: 196 VYIEKYIENPHHIEVQIMGDKYGNVVHLGERECSIQRRNQK----VIEESPSPFVKDETR 251

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K++ ++A  A + IG       +F+ D   +  ++LE+N 
Sbjct: 252 KKMLKVAVEACKRIGYYSAGTLEFMMDK-DQNFYFLEMNT 290


>gi|257054651|ref|YP_003132483.1| acetyl/propionyl-CoA carboxylase, alpha subunit [Saccharomonospora
           viridis DSM 43017]
 gi|256584523|gb|ACU95656.1| acetyl/propionyl-CoA carboxylase, alpha subunit [Saccharomonospora
           viridis DSM 43017]
          Length = 591

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 37/223 (16%), Positives = 78/223 (34%), Gaps = 21/223 (9%)

Query: 56  NVLHGNFG---EDGLV-QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS- 110
           N +H  +G   E+    QA+++   + +      A     DK+ ++ +    G P+ P  
Sbjct: 81  NAVHPGYGFLSENADFAQAVID-AGLIWIGPSPQAIRDLGDKVTARHIAMKAGAPLVPGT 139

Query: 111 ---ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL----DLLQSSSWNHG 163
              +      ++       P  IK   GG   G+ V +  + IP        ++ +    
Sbjct: 140 KDPVSGADEIVEFAKEHGLPVAIKAAFGGGGRGLKVARTFEEIPELFESATREAVAAFGR 199

Query: 164 DQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPL 221
            +  +E+Y+D    +   V+ D   +V  +           L+          PA  +  
Sbjct: 200 GECFVERYLDKPRHVEAQVLADKHGNVIVVGT-----RDCSLQRRHQKLVEEAPAPFLTD 254

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +  + +   A    +  G  G    ++L       + +LE+N 
Sbjct: 255 EQREIIHSSAKAICREAGYSGAGTVEYLV-GSDGTISFLEVNT 296


>gi|307594347|ref|YP_003900664.1| lysine biosynthesis enzyme LysX [Vulcanisaeta distributa DSM 14429]
 gi|307549548|gb|ADN49613.1| lysine biosynthesis enzyme LysX [Vulcanisaeta distributa DSM 14429]
          Length = 285

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 28/185 (15%), Positives = 75/185 (40%), Gaps = 18/185 (9%)

Query: 88  ALSMDKMRSKQVVSSCGVPVCPSILV--NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145
            +  +K  +  +++  G+P+  +++   +   + +  ++  P +IKP+ G     + ++ 
Sbjct: 85  MIGNNKAITLAILNRLGIPIPNTVVALSSESAIKALGVVGYPAIIKPVHGSWGRLVSLVG 144

Query: 146 KDQSIPLDLLQSSSWN--HGDQLLIEQYV--DGIELTCGVMGDASLDVTEIAVPKSDFYS 201
            ++ + L     SS      +  L+++++   G ++   V+GD ++          D+ +
Sbjct: 145 SNEDLTLLARHRSSMENPQYETYLVQEFIRKPGRDIRVTVVGDEAVAAIYRYAVGDDWRT 204

Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
              +     +  + P         E++ ++  A +AIG    +  D            LE
Sbjct: 205 NTARGGKAEAVRIDP---------ELEDISVKATKAIGAY-YAGVD--VVESDGGYKVLE 252

Query: 262 INVQP 266
           +N  P
Sbjct: 253 VNTVP 257


>gi|307306778|ref|ZP_07586519.1| Carbamoyl-phosphate synthase L chain ATP-binding [Sinorhizobium
           meliloti BL225C]
 gi|306902069|gb|EFN32667.1| Carbamoyl-phosphate synthase L chain ATP-binding [Sinorhizobium
           meliloti BL225C]
          Length = 662

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 40/225 (17%), Positives = 78/225 (34%), Gaps = 22/225 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      +    + +      A      K  +K ++   GVPV P    
Sbjct: 77  AIHPGYGFLSENADFAEAVAEAGMIFVGPPPAAIRAMGLKDAAKALMERSGVPVVPGYHG 136

Query: 114 NRFTM----DSQHLISPPYVIKPLKGGSSLGIIVIKKDQS----IPLDLLQSSSWNHGDQ 165
                    D    I  P +IK   GG   G+  +++ +     +     ++ S      
Sbjct: 137 EEQDASFLADRAREIGYPVLIKARAGGGGKGMRRVERQEDFGPALEAARREAESAFGDGS 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           +L+E+Y+     +   V GD   ++              L+          PA  +  ++
Sbjct: 197 VLLERYLTKPRHIEMQVFGDRHGNIV-----HLFERDCSLQRRHQKVIEEAPAPGMTAEV 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR----KVFWLEINV 264
            + +   A  A QAIG  G    +F+ D  +       +++E+N 
Sbjct: 252 RRAMGDAAVRAAQAIGYVGAGTVEFIADVTNGLWPDHFYFMEMNT 296


>gi|283835095|ref|ZP_06354836.1| carbamoyl-phosphate synthase, large subunit [Citrobacter youngae
           ATCC 29220]
 gi|291069392|gb|EFE07501.1| carbamoyl-phosphate synthase, large subunit [Citrobacter youngae
           ATCC 29220]
          Length = 1074

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 98/278 (35%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D +              V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +    Q +LE   +    +   A   + D+ R    +   G+    S +
Sbjct: 89  TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDIAMKKIGLDTARSGI 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     +     +  P +I+P       G  +    +       +    +  ++LLI++
Sbjct: 149 AHTMEEALAVAADVGFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTNELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + +   +   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIEN----FDAMGIHTGDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RNASMAVLREIGVETGGSNVQFAVNPKNGRLIVIEMNP 302



 Score = 61.3 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/197 (15%), Positives = 76/197 (38%), Gaps = 10/197 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           LE   +P   +   A   + D+ R +Q V    +    +  V      ++    I  P V
Sbjct: 654 LEAAGVPVIGTSPDAIDRAEDRERFQQAVDRLKLKQPANATVTAIEQAVEKAKEIGYPLV 713

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  +  +      + S ++   +L+++++ D +E+    + D  + 
Sbjct: 714 VRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDRFLDDAVEVDVDAICDGEMV 773

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           +    +   +    +    S +S   LPA  +  +I   +++        +  RG+    
Sbjct: 774 LIGGIMEHIE----QAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRGLMNVQ 829

Query: 248 FLFDPLSRKVFWLEINV 264
           F     + +V+ +E+N 
Sbjct: 830 FAV--KNNEVYLIEVNP 844


>gi|225871824|ref|YP_002753278.1| acetyl-CoA carboxylase, biotin carboxylase [Acidobacterium
           capsulatum ATCC 51196]
 gi|225794218|gb|ACO34308.1| acetyl-CoA carboxylase, biotin carboxylase [Acidobacterium
           capsulatum ATCC 51196]
          Length = 456

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 84/220 (38%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     +     I +       + L  +K +++Q +    VP+ P    
Sbjct: 77  AIHPGYGLLSENANFAEVCRASNIKFIGPPPEVTRLMGEKEKARQAMKKAKVPILPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL---DLLQSSSWNHG-DQ 165
            I      ++    +  P ++K   GG   G+ VI+    +P         ++   G  +
Sbjct: 137 IIASEDEALEWAKSVGYPVILKAKAGGGGRGMRVIRSAAELPALYQAASTEAANAFGNGE 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           L +E++++    +   V+ D   +V  +   +        K            ++   + 
Sbjct: 197 LYMEKFIERPRHIEFQVLADEHGNVMSLGERECSIQRRHQK----LIEEAPSLQVTPKMR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +E+ +    + +A+G +     +FL D    K++++E+N 
Sbjct: 253 EEIGKTLKKSLEAVGYQNAGTVEFLMDE-DGKLYFIEMNT 291


>gi|225870647|ref|YP_002746594.1| carbamoyl-phosphate synthase large chain [Streptococcus equi subsp.
           equi 4047]
 gi|254813603|sp|C0M756|CARB_STRE4 RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|225700051|emb|CAW94096.1| carbamoyl-phosphate synthase large chain [Streptococcus equi subsp.
           equi 4047]
          Length = 1058

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 45/268 (16%), Positives = 99/268 (36%), Gaps = 30/268 (11%)

Query: 25  ALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNVLHGNFG 63
           AL++ G++V  ++        D+ V                +L   +PD     L G  G
Sbjct: 36  ALKEEGYQVVLVNSNPATIMTDKEVADKVYIEPLTLAFVSRILRKERPDALLPTLGGQTG 95

Query: 64  EDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFT 117
            +  ++     IL+ L +    + + A   + D+   KQ++   G P+  S +V      
Sbjct: 96  LNMAMELSKAGILQELGVELLGTTLSAIDQAEDRDLFKQLMKELGEPIPESEIVTTVEAA 155

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IE 176
           +   + I  P +++P       G  +   ++ +   +      +   Q LIE+ + G  E
Sbjct: 156 IGFANAIGYPVIVRPAFTLGGTGGGICSNEEVLRDIVENGLKLSPVTQCLIERSIAGFKE 215

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +   VM DA+ +   + V   + +     ++  +        +     + ++  +    +
Sbjct: 216 IEYEVMRDAADNA--LVVCSMENFDPVGIHTGDSIVFAPTQTLSDVENQLLRDASLRIIR 273

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINV 264
           A+   G        DP S   + +E+N 
Sbjct: 274 ALKIEGGCNVQLALDPNSFSYYVIEVNP 301



 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 26/225 (11%), Positives = 76/225 (33%), Gaps = 13/225 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL--ISPPYV 129
           L    +P   + +     + D+   ++ +   G+P  P           +    I  P +
Sbjct: 646 LTKAGVPILGTQLEDLDCAEDRELFEKALKELGIPQPPGKTATNEAEALEAARAIGFPVL 705

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           ++P        + +++ +  +   +  +   +    +LI+ Y+ G E     + D    +
Sbjct: 706 VRPSYVLGGRAMEIVENENDLRSYMKTAVKASPEHPVLIDSYILGKECEVDAISDGQSVL 765

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               +   +           +S  V P + +   +  ++          + C G+    F
Sbjct: 766 IPGIMEHIERAGVHS----GDSMAVYPPQHLSKQVQDKIVDYTKRLAIGLNCIGMMNIQF 821

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    + +V+ +E+N +   T     P ++        ++   ++
Sbjct: 822 VI--QNEQVYVIEVNPRASRT----VPFLSKVTNIPMAQVATKLI 860


>gi|261419341|ref|YP_003253023.1| carbamoyl phosphate synthase large subunit [Geobacillus sp.
           Y412MC61]
 gi|319766157|ref|YP_004131658.1| carbamoyl-phosphate synthase, large subunit [Geobacillus sp.
           Y412MC52]
 gi|261375798|gb|ACX78541.1| carbamoyl-phosphate synthase, large subunit [Geobacillus sp.
           Y412MC61]
 gi|317111023|gb|ADU93515.1| carbamoyl-phosphate synthase, large subunit [Geobacillus sp.
           Y412MC52]
          Length = 1065

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/218 (13%), Positives = 77/218 (35%), Gaps = 14/218 (6%)

Query: 68  VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC--PSILVNRFTMDSQHLIS 125
           + A LE   +    + +     + D+ + +Q +S  G+P     + +     +     I 
Sbjct: 642 LAAELEARGVRLLGTTLEDLDRAEDRDKFEQALSELGIPKPAGKTAVSVEEAVAIAEEIG 701

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            P +++P        + ++     +   +  +   N    +L+++Y+ G E+    + D 
Sbjct: 702 YPVLVRPSYVLGGRAMEIVYNRGELLHYMEHAVRVNPQHPVLVDRYITGKEVEVDAIADG 761

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGIS 244
              V    +   +           +S  V P + +  ++  ++        + +   G+ 
Sbjct: 762 ETVVIPGIMEHIERAGVHS----GDSIAVYPPQTLSAEVIDKIADYTIRLARGLHIVGLL 817

Query: 245 RSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277
              F+       V+ LE+N       P ++ ++  P  
Sbjct: 818 NIQFVVSGSD--VYVLEVNPRSSRTVPFLSKITGVPMA 853



 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 52/297 (17%), Positives = 115/297 (38%), Gaps = 36/297 (12%)

Query: 25  ALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFNVLHGNFG 63
           AL++ G+KV  ++ + +                     V  ++   +PD     L G  G
Sbjct: 36  ALKEEGYKVILVNSNPATIMTDTEIADKVYMEPLTLDFVARIIRKERPDAILPTLGGQTG 95

Query: 64  EDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
            +  V+     +LE   +    + + A   + D+ + + +++  G PV  S +++     
Sbjct: 96  LNLAVELAKAGVLEECGVEILGTKLEAIEKAEDREQFRALMNELGEPVPESAIIHSLEEA 155

Query: 120 SQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IE 176
                 I  P +++P       G  +   ++ +   +      +   Q L+E+ + G  E
Sbjct: 156 YAFVEQIGYPVIVRPAFTLGGTGGGICTNEEELIEIVSTGLKMSPVHQCLLERSIAGYKE 215

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAH 235
           +   VM DA+ +   I V   +     +   + +S  V P++ +    Y+ ++  +    
Sbjct: 216 IEYEVMRDANDNA--IVVCNMENID-PVGIHTGDSIVVAPSQTLSDREYQLLRNASLKII 272

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +A+G  G        DP S + + +E+N  P ++  S     +   GY   +L   +
Sbjct: 273 RALGIEGGCNVQLALDPDSFRYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAKI 325


>gi|24379315|ref|NP_721270.1| carbamoyl phosphate synthase large subunit [Streptococcus mutans
           UA159]
 gi|81845295|sp|Q8DUP3|CARB_STRMU RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|24377237|gb|AAN58576.1|AE014927_5 carbamoylphosphate synthetase, large subunit [Streptococcus mutans
           UA159]
          Length = 1059

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 27/217 (12%), Positives = 72/217 (33%), Gaps = 20/217 (9%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYV 129
           L    +    + +     + D+   +Q +    +P  P            S   I  P +
Sbjct: 646 LSHAGVTILGTQVADLDRAEDRDLFEQALKDLNIPQPPGQTATNEEEAVASARKIGFPVL 705

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS--- 186
           ++P        + +++ +  +   +  +   +    +L++ Y+ G E     + D     
Sbjct: 706 VRPSYVLGGRAMEIVESENDLRSYMRTAVKASPDHPVLVDSYLVGSECEVDAISDGKDVL 765

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISR 245
           +      + ++  +S        +S  V P + +  ++   +          + C G+  
Sbjct: 766 IPGIMEHIERAGVHS-------GDSMAVYPPQTLSKEVQATIADYTKRLAIGLNCIGMMN 818

Query: 246 SDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277
             F+       V+ +E+N       P ++ V+  P  
Sbjct: 819 IQFVI--KDETVYVIEVNPRASRTVPFLSKVTDIPMA 853



 Score = 70.5 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 49/296 (16%), Positives = 107/296 (36%), Gaps = 34/296 (11%)

Query: 25  ALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNVLHGNFG 63
           AL++ G+ V  ++        D+ +                +L   +PD     L G  G
Sbjct: 36  ALKEEGYSVVLVNSNPATIMTDKEIADKVYIEPITIEFVTRILRKERPDAILPTLGGQTG 95

Query: 64  EDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFT 117
            +  ++     IL+ L +    + + A   + D+   KQ++     P+  S +VN     
Sbjct: 96  LNMAMELSRAGILDELGVELLGTKLSAIDQAEDRDLFKQLMEDLEQPIPESDIVNSVDEA 155

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IE 176
           +     I  P +++P       G  +   ++ +          +   Q LIE+ + G  E
Sbjct: 156 VAFAAKIGYPVIVRPAFTLGGTGGGMCADEKELREIAENGLKLSPVTQCLIERSIAGFKE 215

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +   VM D++ +   + V   + +     ++  +        +     + ++  +    +
Sbjct: 216 IEYEVMRDSADNA--LVVCNMENFDPVGIHTGDSIVFAPTQTLSDIENQMLRDASLKIIR 273

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           A+   G        DP S K + +E+N  P ++  S     +   GY   +L   +
Sbjct: 274 ALKIEGGCNVQLALDPHSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAKI 325


>gi|16264451|ref|NP_437243.1| putative methylcrotonoyl-CoA carboxylase biotinylated subunit
           protein [Sinorhizobium meliloti 1021]
 gi|15140588|emb|CAC49103.1| putative methylcrotonoyl-CoA carboxylase biotinylated subunit
           protein [Sinorhizobium meliloti 1021]
          Length = 662

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 40/225 (17%), Positives = 78/225 (34%), Gaps = 22/225 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      +    + +      A      K  +K ++   GVPV P    
Sbjct: 77  AIHPGYGFLSENADFAEAVAEAGMIFVGPPPAAIRAMGLKDAAKALMERSGVPVVPGYHG 136

Query: 114 NRFTM----DSQHLISPPYVIKPLKGGSSLGIIVIKKDQS----IPLDLLQSSSWNHGDQ 165
                    D    I  P +IK   GG   G+  +++ +     +     ++ S      
Sbjct: 137 EEQDASFLADRAREIGYPVLIKARAGGGGKGMRRVERQEDFGPALEAARREAESAFGDGS 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           +L+E+Y+     +   V GD   ++              L+          PA  +  ++
Sbjct: 197 VLLERYLTKPRHIEMQVFGDRHGNIV-----HLFERDCSLQRRHQKVIEEAPAPGMTAEV 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR----KVFWLEINV 264
            + +   A  A QAIG  G    +F+ D  +       +++E+N 
Sbjct: 252 RRAMGDAAVRAAQAIGYVGAGTVEFIADVTNGLWPDHFYFMEMNT 296


>gi|327538397|gb|EGF25069.1| Acetyl-CoA carboxylase, biotin carboxylase [Rhodopirellula baltica
           WH47]
          Length = 450

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 33/219 (15%), Positives = 69/219 (31%), Gaps = 17/219 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+             +      A     DK  ++ +  +  VPV P    
Sbjct: 77  AIHPGYGFLAENAQFNEQCRSSGFEFIGPSPTAMDKLGDKNTARSMAIAQNVPVVPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQ----SIPLDLLQSSSWNHGDQ 165
            I      +D+   I  P +IK   GG   G+ V + +      +     ++ +      
Sbjct: 137 LIADFDRAIDTAKEIGFPVLIKATAGGGGKGMRVAETEDVLKSQLEAARNEAIAAFGNGG 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+++     +   V+ D   +V  +            K             +P D  
Sbjct: 197 VYLEKFIQQPRHIEVQVIADTHGNVCHLFERDCSVQRRHQK----LVEEAPSPDLPADRR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
           + +   A          G    +F+ D      +++E+N
Sbjct: 253 EAICDAAVRMIAGADYSGAGTVEFIVDK-DYNFYFIEVN 290


>gi|221136030|ref|XP_002156927.1| PREDICTED: similar to methylcrotonyl-CoA carboxylase, partial
           [Hydra magnipapillata]
          Length = 297

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 38/219 (17%), Positives = 77/219 (35%), Gaps = 17/219 (7%)

Query: 58  LHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS---- 110
           +H  +G   E+     + E   I +      A  +   K+ +K+ V +  +P+ P     
Sbjct: 77  IHPGYGFLSENSDFAELAEKNNITFIGPKSKAMKVMGSKLAAKEAVKAFDIPMVPGLDEA 136

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQL 166
           I            I  P +IK   GG   G+ +++ +      + ++ S          +
Sbjct: 137 ITDIALAKKVAGEIGFPILIKASAGGGGKGMRIVENEAEFESQMDRAISEATNAFGDGSV 196

Query: 167 LIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
            IE+YV     +   +M D+  ++  +   +        K           + +  +I K
Sbjct: 197 FIEKYVGSPRHIEIQIMADSHGNILYLFERECSIQRRHQK----VVEEAPSSVLTPEIRK 252

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +   A    Q+    G    +FL D      ++LE+N 
Sbjct: 253 AMGEAAVKVAQSCDYLGAGTVEFLLDENKN-FYFLEMNT 290


>gi|159904863|ref|YP_001548525.1| RimK domain-containing protein [Methanococcus maripaludis C6]
 gi|159886356|gb|ABX01293.1| RimK domain protein ATP-grasp [Methanococcus maripaludis C6]
          Length = 316

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 39/260 (15%), Positives = 95/260 (36%), Gaps = 47/260 (18%)

Query: 65  DGL-VQAILELLEIPYTHSGILAS------------ALSMDKMRSKQVVSSCGVPVCPSI 111
           DGL +++  + + I Y  S I                +  DK+     +    VP+  + 
Sbjct: 51  DGLFIRSKTDPMNISYVASRIAELNCVKVIDDSKSIQICADKINMYLHMIKNDVPIPKTK 110

Query: 112 LVNRFTMDSQHL------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
            + +   + ++L      I  P ++K      S+ +  +   +        +S +     
Sbjct: 111 FLRKSENNLENLKCIVEEIGLPLIVKEPSTSFSMRVEKVNSLEEFS---KVASRFLRLSD 167

Query: 166 LLI-EQYVDGI-ELTCGVMGDASLDVTEIAVPKSDF-----YSYELKYSSLNSTHVLPAK 218
           +L+ +++++   +   G++    + V +  +PK  F           Y  + S       
Sbjct: 168 ILVAQEFIETRFDWRVGILNGEVIYVCKYLIPKESFKIQDCVDGHRVYCMVESVMF---- 223

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM--TPVSIFPE 276
              ++ KE+   A  A  A+G       D         ++ +E+N  P +  T    +PE
Sbjct: 224 --DEVPKEIINTALNAANAVGTGLYG-ID--LKEKDGSIYVIEVNDNPSLETTEDEFYPE 278

Query: 277 MAAYAGYSFRELLLWMVEDA 296
                   + +++ ++++D+
Sbjct: 279 A-------YSKIVSYIMDDS 291


>gi|86741613|ref|YP_482013.1| carbamoyl-phosphate synthase L chain, ATP-binding [Frankia sp.
           CcI3]
 gi|86568475|gb|ABD12284.1| Carbamoyl-phosphate synthase L chain, ATP-binding [Frankia sp.
           CcI3]
          Length = 450

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 36/219 (16%), Positives = 76/219 (34%), Gaps = 17/219 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+     + E   I +            DK  ++ ++ + G+P+ P    
Sbjct: 77  AIHPGYGFLSENADFAEVCESEGITFVGPPASVMEKLGDKAVARSLMVAAGLPLLPGSHT 136

Query: 114 NRFTMDSQHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGDQ 165
                D   +    I  P +IK   GG   G+ ++++ +            + +     +
Sbjct: 137 AIDHADEAEVFADRIGYPVIIKAAAGGGGRGMRIVEQPEEFLRAYTETRAGAQAVFGDGR 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+Y+     +   V+ D   +   +            K             +P D+ 
Sbjct: 197 VYVERYLPSARHVEIQVLCDQYGNGVYLGARDCSVQRRHQK----LIEETPAPCLPADLI 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
           +E+ R A       G  G    +FL DP     +++E+N
Sbjct: 253 EEMGRAALRGVATAGYVGAGTVEFLVDPA-GAYYFMEVN 290


>gi|78214189|ref|YP_382968.1| phosphoribosylglycinamide formyltransferase 2 [Synechococcus sp.
           CC9605]
 gi|123756826|sp|Q3AG69|PURT_SYNSC RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|78198648|gb|ABB36413.1| phosphoribosylglycinamide formyltransferase 2 [Synechococcus sp.
           CC9605]
          Length = 392

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 37/247 (14%), Positives = 89/247 (36%), Gaps = 30/247 (12%)

Query: 32  KVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAI--LELLEIPYTHSGILASAL 89
           +V  +    ++  V+   +PD+    +         V A+  LE   I        A+A+
Sbjct: 50  EVLPMTDADALLEVVRRHQPDVVIPEIEAL-----AVHALAELEQEGITVI-PTARATAV 103

Query: 90  SMDKMRSKQVVSS-CGVPVCPSILVNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           +M++ R + + +    +        +           +  P V+KP+   S  G  V+  
Sbjct: 104 TMNRDRIRDLAAGELNLRTARFAYASSAEELKAVAEPLGWPVVVKPVMSSSGKGQSVVDC 163

Query: 147 DQSIPLD--LLQSSSWNHGDQLLIEQYVDGIELTCGVM-----GDASLDVTEIAVPKSDF 199
              +P       + +     Q+++E+++   +L   ++        +L    I   + + 
Sbjct: 164 ADDLPKAWEAAMAGARGTSTQVIVEEFLH-FDLEITLLTIRQRNGETLFCAPIG-HEQEG 221

Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
             Y+  +         PA++      + Q +A      +G  G+   +F       +V +
Sbjct: 222 GDYQCSW--------QPAQLTDQQLHQAQAMAKTVTDNLGGAGLFGVEFFL--CDDEVIF 271

Query: 260 LEINVQP 266
            E++ +P
Sbjct: 272 SELSPRP 278


>gi|32475435|ref|NP_868429.1| biotin carboxylase [Rhodopirellula baltica SH 1]
 gi|32445976|emb|CAD78707.1| biotin carboxylase [Rhodopirellula baltica SH 1]
          Length = 450

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 33/219 (15%), Positives = 69/219 (31%), Gaps = 17/219 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+             +      A     DK  ++ +  +  VPV P    
Sbjct: 77  AIHPGYGFLAENAQFNEQCRSSGFEFIGPSPTAMDKLGDKNTARSMAIAQNVPVVPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQ----SIPLDLLQSSSWNHGDQ 165
            I      +D+   I  P +IK   GG   G+ V + +      +     ++ +      
Sbjct: 137 LIADFDRAIDTAKEIGFPVLIKATAGGGGKGMRVAETEDVLKSQLEAARNEAIAAFGNGG 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+++     +   V+ D   +V  +            K             +P D  
Sbjct: 197 VYLEKFIQQPRHIEVQVIADTHGNVCHLFERDCSVQRRHQK----LVEEAPSPDLPADRR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
           + +   A          G    +F+ D      +++E+N
Sbjct: 253 EAICDAAVRMIAGADYSGAGTVEFIVDK-DYNFYFIEVN 290


>gi|1168772|sp|P46537|CARB_BACCL RecName: Full=Carbamoyl-phosphate synthase pyrimidine-specific
           large chain; AltName: Full=Carbamoyl-phosphate
           synthetase ammonia chain
 gi|312443|emb|CAA51739.1| carbamoyl-phosphate synthase (glutamine-hydrolysing) [Bacillus
           caldolyticus]
          Length = 1065

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/218 (13%), Positives = 77/218 (35%), Gaps = 14/218 (6%)

Query: 68  VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC--PSILVNRFTMDSQHLIS 125
           + A LE   +    + +     + D+ + +Q +S  G+P     + +     +     I 
Sbjct: 642 LAAELEARGVRLLGTTLEDLDRAEDRDKFEQALSELGIPKPAGKTAVSVEEAVAIAEEIG 701

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            P +++P        + ++     +   +  +   N    +L+++Y+ G E+    + D 
Sbjct: 702 YPVLVRPSYVLGGRAMEIVYNRGELLHYMEHAVRVNPQHPVLVDRYITGKEVEVDAIADG 761

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGIS 244
              V    +   +           +S  V P + +  ++  ++        + +   G+ 
Sbjct: 762 ETVVIPGIMEHIERAGVHS----GDSIAVYPPQTLSAEVIDKIADYTIRLARGLHIVGLL 817

Query: 245 RSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277
              F+       V+ LE+N       P ++ ++  P  
Sbjct: 818 NIQFVVSGSD--VYVLEVNPRSSRTVPFLSKITGVPMA 853



 Score = 67.5 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 52/297 (17%), Positives = 115/297 (38%), Gaps = 36/297 (12%)

Query: 25  ALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFNVLHGNFG 63
           AL++ G+KV  ++ + +                     V  ++   +PD     L G  G
Sbjct: 36  ALKEEGYKVILVNSNPATIMTDTEIADKVYMEPLTLDFVARIIRKERPDAILPTLGGQTG 95

Query: 64  EDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
            +  V+     +LE   +    + + A   + D+ + + +++  G PV  S +++     
Sbjct: 96  LNLAVELAKAGVLEECGVEILGTKLEAIEKAEDREQFRALMNELGEPVPESAIIHSLEEA 155

Query: 120 SQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IE 176
                 I  P +++P       G  +   ++ +   +      +   Q L+E+ + G  E
Sbjct: 156 YAFVEQIGYPVIVRPAFTLGGTGGGICTNEEELVEIVSTGLKLSPVHQCLLERSIAGYKE 215

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAH 235
           +   VM DA+ +   I V   +     +   + +S  V P++ +    Y+ ++  +    
Sbjct: 216 IEYEVMRDANDNA--IVVCNMENID-PVGIHTGDSIVVAPSQTLSDREYQLLRNASLKII 272

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +A+G  G        DP S + + +E+N  P ++  S     +   GY   +L   +
Sbjct: 273 RALGIEGGCNVQLALDPDSFRYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAKI 325


>gi|88811325|ref|ZP_01126580.1| acetyl-CoA carboxylase [Nitrococcus mobilis Nb-231]
 gi|88791214|gb|EAR22326.1| acetyl-CoA carboxylase [Nitrococcus mobilis Nb-231]
          Length = 447

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 76/221 (34%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      +E     +         L  DK+ + + +   G+P  P    
Sbjct: 77  AIHPGYGFLAENAGFVERVESSGFVFIGPRAETIQLMGDKVSAIRAMQDAGIPCVPGSDG 136

Query: 114 NRFTMDSQHL-----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
                   +L     I  P +IK   GG   G+ V+  + S+   +     ++ +    D
Sbjct: 137 PVGDDAEANLRLAAEIGYPVIIKAAAGGGGRGMRVVHSEASLLHAIAVTRAEARAAFGSD 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            + +E++++    +   V+ D   +   +            K     +       I  + 
Sbjct: 197 TVYMEKFLERPRHIEIQVLADQYGNAIHLGERDCSMQRRHQK----VAEESPAPGITAEQ 252

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + + +    A Q IG  G    +FL+       F++E+N 
Sbjct: 253 RQAIGQRCADACQEIGYCGAGTFEFLY--QDGNFFFIEMNT 291


>gi|198241932|ref|YP_002214022.1| carbamoyl phosphate synthase large subunit [Salmonella enterica
           subsp. enterica serovar Dublin str. CT_02021853]
 gi|197936448|gb|ACH73781.1| carbamoyl-phosphate synthase, large subunit [Salmonella enterica
           subsp. enterica serovar Dublin str. CT_02021853]
 gi|326621766|gb|EGE28111.1| carbamoyl-phosphate synthase, large subunit [Salmonella enterica
           subsp. enterica serovar Dublin str. 3246]
          Length = 1075

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 98/278 (35%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D +              V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +    Q +LE   +    +   A   + D+ R    +   G+    S +
Sbjct: 89  TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDIAMKKIGLDTARSGI 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     +     +  P +I+P       G  +    +       +    +  ++LLI++
Sbjct: 149 AHTMEEALAVAADVGFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTNELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + +   +   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIEN----FDAMGIHTGDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RNASMAVLREIGVETGGSNVQFAVNPKNGRLIVIEMNP 302



 Score = 61.7 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/197 (14%), Positives = 74/197 (37%), Gaps = 10/197 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           LE   +P   +   A   + D+ R +  V    +    +  V      ++    I  P V
Sbjct: 654 LEAAGVPVIGTSPDAIDRAEDRERFQHAVDRLKLKQPANATVTAIEQAVEKAKEIGYPLV 713

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  +  +      + S ++   +L+++++ D +E+    + D  + 
Sbjct: 714 VRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDRFLDDAVEVDVDAICDGEMV 773

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           +    +   +    +    S +S   LPA  +  +I   +++        +  RG+    
Sbjct: 774 LIGGIMEHIE----QAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRGLMNVQ 829

Query: 248 FLFDPLSRKVFWLEINV 264
           F       +V+ +E+N 
Sbjct: 830 FAV--KDNEVYLIEVNP 844


>gi|29346859|ref|NP_810362.1| biotin carboxylase [Bacteroides thetaiotaomicron VPI-5482]
 gi|29338756|gb|AAO76556.1| biotin carboxylase [Bacteroides thetaiotaomicron VPI-5482]
          Length = 503

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 81/220 (36%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       E   + +   G    A    K  +++++   G+P+ P    
Sbjct: 76  AIHPGYGFLSENADFARRCEEEGVIFIGPGADIIAKMGIKTEARKIMREAGLPIVPGTET 135

Query: 114 N----RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN----HGDQ 165
                         +  P ++K L GG   G+ +++ ++     L  S S        D 
Sbjct: 136 PVQGIEEVKKVAKEVGYPIMLKALAGGGGKGMRLVRSEEEAETALRLSQSEAGTSFGNDA 195

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+Y++    +   +MGD   +V  +   +        K             +  +  
Sbjct: 196 VYIEKYIENPHHIEVQIMGDKYGNVVHLGERECSIQRRNQK----VIEESPSPFVKDETR 251

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K++ ++A  A + IG       +F+ D   +  ++LE+N 
Sbjct: 252 KKMLKVAVEACKRIGYYSAGTLEFMMDK-DQNFYFLEMNT 290


>gi|255505351|ref|ZP_05345624.3| ATP-grasp domain protein [Bryantella formatexigens DSM 14469]
 gi|255268517|gb|EET61722.1| ATP-grasp domain protein [Bryantella formatexigens DSM 14469]
          Length = 431

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 28/183 (15%), Positives = 72/183 (39%), Gaps = 21/183 (11%)

Query: 88  ALSMDKMRSKQVVSSCGVPVC-PSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           A + DK R K+   + G+ V     +   +T +    IS P ++KP+   +  G+ +   
Sbjct: 112 ACARDKARFKEHCMAVGLDVPQRYFVKKPYTQEMFAKISYPVIVKPVDACAQRGLTLCGS 171

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV-------TEIAVPKSDF 199
           ++ +     ++  ++   ++++E++++G E++          V         ++V     
Sbjct: 172 EEELITAYEKALQYSQKKEVIVEEFIEGEEVSMEYFFLDGHPVFCRINDLLPVSVNNRPI 231

Query: 200 YSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
           + +  + S     ++   A     +++ +Q     A      + I R          K +
Sbjct: 232 FCFIWQQSRHKEKYLRDTADKTDALFQRMQCYLGAAF----LQAIYR--------DGKYY 279

Query: 259 WLE 261
           +LE
Sbjct: 280 FLE 282


>gi|182416339|ref|YP_001821405.1| carbamoyl phosphate synthase large subunit [Opitutus terrae PB90-1]
 gi|177843553|gb|ACB77805.1| carbamoyl-phosphate synthase, large subunit [Opitutus terrae
           PB90-1]
          Length = 1067

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 52/277 (18%), Positives = 101/277 (36%), Gaps = 34/277 (12%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL   G+++  +              DV         S+  ++A  +PD    
Sbjct: 29  SGTQACKALRALGYQIVLVNSNPATIMTDPGTADVTYIEPLTVPSLTEIIAKERPDALLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV---PVCP 109
            L G  G +   Q     +L    +        A     D++  K+ +   G+      P
Sbjct: 89  NLGGQTGLNLSSQLAKAGVLARFGVRIIGVEADAIEKGEDRIIFKETMKRLGIDMPRSAP 148

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
           +  V      +   +  P VI+P       G   +   + + +   +  + +  +Q+L+E
Sbjct: 149 AFSVEEAEKVATE-LGYPVVIRPAYTLGGTGGGHVYNVEELRVVASRGLAASMVNQILVE 207

Query: 170 QYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEV 227
           + V G  EL   V+ DA   +  +   ++      +   + +S  V P   I   +   +
Sbjct: 208 ESVLGWEELELEVVRDAKNHLITVCFIENVD---AMGVHTGDSYCVAPMLTIEPKLQARL 264

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           Q  A+   ++IG  G +   F  DP + ++  +EIN 
Sbjct: 265 QEYAYRIVESIGVIGGTNVQFAHDPETDRIVVIEINP 301



 Score = 63.2 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 42/262 (16%), Positives = 93/262 (35%), Gaps = 27/262 (10%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ------ 69
           AL DAG++   +         D D S  L    L  +   ++      E  +VQ      
Sbjct: 580 ALRDAGYETIMVNCNPETVSTDYDTSDKLYFEPLTIEDVLSIYAKEKPEGVVVQFGGQTP 639

Query: 70  ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--QHL 123
                 LE   +    +      L+ D+ R +Q++   G+P+  S + + F         
Sbjct: 640 LNIAKELEAAGVKVLGTSPDTIDLAEDRDRFRQMMEKMGIPMPESGMASTFEEARAVAAR 699

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVM 182
           I  P +++P        + V+  +  +   L ++   +    +LI+++++   E     +
Sbjct: 700 IGYPVMVRPSFVLGGRAMEVVHDEAMLKDYLARAIDVSPERPILIDRFLENATEAEADAL 759

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D +       +   +F      +S  ++  + P  +P      ++       + +   G
Sbjct: 760 ADGTDAFVPAVMEHIEFAGI---HSGDSACAIPPVSLPKKHLATIEAYTLRIGRELKVAG 816

Query: 243 ISRSDFLFDPLSRKVFWLEINV 264
           +   +  +     KV+ LE N 
Sbjct: 817 V--MNIQYAICQDKVYVLEANP 836


>gi|254195242|ref|ZP_04901670.1| acetyl-CoA carboxylase, biotin carboxylase [Burkholderia
           pseudomallei S13]
 gi|254299572|ref|ZP_04967021.1| acetyl-CoA carboxylase, biotin carboxylase [Burkholderia
           pseudomallei 406e]
 gi|157809357|gb|EDO86527.1| acetyl-CoA carboxylase, biotin carboxylase [Burkholderia
           pseudomallei 406e]
 gi|169651989|gb|EDS84682.1| acetyl-CoA carboxylase, biotin carboxylase [Burkholderia
           pseudomallei S13]
          Length = 484

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 77/220 (35%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+    A +E   + +        A   DK R+++     GVP  P    
Sbjct: 95  AIHPGYGFLSENADFAAQVEAAGLIFVGPPARVIATMGDKARARETARRAGVPTVPGSEG 154

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK----DQSIPLDLLQSSSWNHGDQ 165
            +       +    I  P +IK   GG   GI V          +PL   ++ +      
Sbjct: 155 VVASLDGAREVAARIGYPVMIKAAAGGGGRGIRVAHDAAQLAAQLPLAQREAQAAFGDGG 214

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+++     +   ++GD   +V  +   +        K             +   + 
Sbjct: 215 VYLERFIARARHIEVQILGDGE-NVIHLFERECSLQRRRQKIL----EEAPSPSLTPALR 269

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +   A    + +  RG    ++LFD    +++++E+N 
Sbjct: 270 DALCASATRLARQVSYRGAGTLEYLFDDARGELYFIEMNT 309


>gi|84502599|ref|ZP_01000718.1| methylcrotonyl-CoA carboxylase, alpha subunit [Oceanicola batsensis
           HTCC2597]
 gi|84388994|gb|EAQ01792.1| methylcrotonyl-CoA carboxylase, alpha subunit [Oceanicola batsensis
           HTCC2597]
          Length = 645

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 42/224 (18%), Positives = 82/224 (36%), Gaps = 23/224 (10%)

Query: 58  LHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL-- 112
           +H  +G   E+      +E   + +      A      K  +K ++   GVPV P     
Sbjct: 78  IHPGYGFLSENPDFVEAVEAAGLTFIGPSARAIRAMGLKDAAKALMEEAGVPVVPGYHGA 137

Query: 113 --VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQL 166
              +R    +   I  P +IK + GG   G+ ++++  +    L  + S          +
Sbjct: 138 DQSDRTLSKAAEEIGYPVLIKAVAGGGGKGMRLVERAGAFAEALESARSEARTAFGNPDV 197

Query: 167 LIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIY 224
           L+E++V+    +   V GD +  V              L+          PA  +  ++ 
Sbjct: 198 LVERFVEKPRHIEVQVFGDGTRAV------HLFERDCSLQRRHQKVIEEAPAPGMTEEMR 251

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSR----KVFWLEINV 264
           + +   A  A +AIG  G    +F+ D          +++E+N 
Sbjct: 252 EAMGAAAVRAAEAIGYAGAGTIEFIVDGSDGLRPDGFWFMEMNT 295


>gi|116668664|ref|YP_829597.1| carbamoyl-phosphate synthase L chain, ATP-binding [Arthrobacter sp.
           FB24]
 gi|116608773|gb|ABK01497.1| biotin carboxylase / biotin carboxyl carrier protein [Arthrobacter
           sp. FB24]
          Length = 587

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 73/221 (33%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLV-QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            +H  +G   E+    QA+L+   + +      A     +K+ ++++    G P+     
Sbjct: 76  AVHPGYGFLSENADFAQAVLD-AGLAWIGPAPEAIRQLGNKITAREIAVRAGAPLVAGSD 134

Query: 111 --ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL----DLLQSSSWNHGD 164
             +               P  IK   GG   G+ V++    I       + ++ +     
Sbjct: 135 GPVDSAAEARAFAEQHGLPIAIKAAFGGGGRGLKVVRNMDEIEESFDSAVREAVAAFGRG 194

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           +  +E+Y+D    +   V+ D   +V  +            K             +  D 
Sbjct: 195 ECFVERYLDRPRHVEAQVLADTHGNVVVVGTRDCSLQRRHQK----LVEEAPAPFLSDDQ 250

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +++   A    +  G  G    +FL       V +LE+N 
Sbjct: 251 RQQICSAAKAVCREAGYSGAGTVEFLV-AADGTVAFLEVNT 290


>gi|317055757|ref|YP_004104224.1| carbamoyl-phosphate synthase large subunit [Ruminococcus albus 7]
 gi|315448026|gb|ADU21590.1| carbamoyl-phosphate synthase, large subunit [Ruminococcus albus 7]
          Length = 1074

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 48/277 (17%), Positives = 99/277 (35%), Gaps = 34/277 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+++  +         D D              +  ++   +PD    
Sbjct: 29  SGTQACKALRNLGYEIVLVNSNPATIMTDPDVADITYIEPLNLDRLTQIIDKERPDALLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G  G +   +     +L+   +      + A     D++  K  ++  G+ +  S +
Sbjct: 89  NLGGQSGLNLCSELDKAGVLKKYGVQVIGVQVDAIERGEDRIEFKNAMNELGIGMPKSQV 148

Query: 113 VNRFTMDS--QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                        +  P V++P       G  ++     + +   +    +   Q+L+E+
Sbjct: 149 AYSVDEAVKIAEELKYPVVLRPAYTMGGAGGGMVYNVDELKVVCARGLQASLVGQVLVEE 208

Query: 171 YVDG-IELTCGVMGDASL-DVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEV 227
            + G  EL   V+ DA+   +T   +   D           +S    P   IP D+ KE+
Sbjct: 209 CIFGWEELELEVVRDANNNKITVCFIENIDPIGVHT----GDSFCSAPMLTIPEDVQKEL 264

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           Q +++   ++I   G     F  +P   ++  +EIN 
Sbjct: 265 QDMSYRIIESIEVIGGCNCQFARNPEDGRIVVIEINP 301



 Score = 59.4 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 24/197 (12%), Positives = 70/197 (35%), Gaps = 10/197 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-SILVN-RFTMDSQHLISPPYV 129
           L+   +    +      L+ D+   + ++   G+P+    + VN    ++  + I  P +
Sbjct: 648 LKKYGVNILGTTPETIDLAEDRDHFRAMMDKLGIPMPEAGMAVNVDEALEIANRIGYPVM 707

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLD 188
           ++P       G+ ++  D+ + + +  +        +LI+++++   E     + D    
Sbjct: 708 VRPSYVLGGRGMEIVHDDEMMRVYMSAAVGVTPDRPILIDRFLNHATECEADAISDGEHC 767

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
                +   +           +S  +LP+  +       ++         +  +G+   +
Sbjct: 768 FVPAVMEHIELAGVHS----GDSACILPSKNLSEKQVATIKEYTKKIAVEMNVKGL--MN 821

Query: 248 FLFDPLSRKVFWLEINV 264
             +      V+ LE N 
Sbjct: 822 MQYAIEGDTVYVLEANP 838


>gi|300784541|ref|YP_003764832.1| UreA amidolyase [Amycolatopsis mediterranei U32]
 gi|299794055|gb|ADJ44430.1| UreA amidolyase [Amycolatopsis mediterranei U32]
          Length = 1182

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 72/220 (32%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   ED       E   I +         +   K  +++   + GVP+     +
Sbjct: 75  AIHPGYGFLSEDAAFARACEDAGIAFAGPAPEHLEVFGSKHTAREAAIAAGVPLLAGTGL 134

Query: 114 NRFTMDS---QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGDQ 165
                D+      I  P ++K   GG  +G+        +         + + S+     
Sbjct: 135 LSDVDDALARAEDIGYPVMLKATGGGGGIGMRACASPDELRAAWDTVRSVAAKSFASSGV 194

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIY 224
            L         +   V GD   +V  +           L+  +       PA  +P D+ 
Sbjct: 195 FLERLVTRARHVEVQVFGDGFGEVLALGT-----RDCSLQRRNQKVVEECPAPDLPEDVR 249

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K +   A     ++  R     ++++DP   +  +LE+N 
Sbjct: 250 KHLVESAVALCSSVRYRSAGTVEYVYDPERGEAAFLEVNT 289


>gi|261337962|ref|ZP_05965846.1| carbamoyl-phosphate synthase, large subunit [Bifidobacterium
           gallicum DSM 20093]
 gi|270277457|gb|EFA23311.1| carbamoyl-phosphate synthase, large subunit [Bifidobacterium
           gallicum DSM 20093]
          Length = 1122

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 49/289 (16%), Positives = 102/289 (35%), Gaps = 38/289 (13%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKV----------------------SQIDVDRSVGL 44
           G ++E + S   G      L + G +V                        IDV   +  
Sbjct: 21  GQAAEFDYS---GTQACRVLREEGIRVILVNSNPATIMTDPEMADATYIEPIDV-PILEQ 76

Query: 45  VLAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVV 100
           ++A  +PD     L G    +  V      +L+   +    + + A     D+   K+VV
Sbjct: 77  IIAKERPDAILPTLGGQTALNAAVALGEAGVLDKYNVELIGASLEAIDRGEDRESFKKVV 136

Query: 101 SSCGVPVCPSILVNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS 158
              G     S + +              P V++P      LG  +    + +        
Sbjct: 137 EEAGAESARSEIAHTLEEVDAIAEEFGFPLVVRPSFTMGGLGSGIAHDTEELHRIAGAGI 196

Query: 159 SWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
            ++  D++LIE+ ++G  E    +M D + +V  +   ++      +   + +S  V PA
Sbjct: 197 HYSPTDEVLIEEGIEGWKEYELELMRDRNDNVVVVCPIENVD---PVGVHTGDSITVAPA 253

Query: 218 K-IPLDIYKEVQRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
             +    Y++++ +     + +G   G     F   P + ++  +E+N 
Sbjct: 254 FTLTDREYQKLRDIGIAIIRGVGVDTGGCNIQFAVHPDTGRIIVIEMNP 302



 Score = 54.4 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 35/233 (15%), Positives = 76/233 (32%), Gaps = 29/233 (12%)

Query: 67  LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTMDSQHLI 124
            + A L+   +P   +   A  L+ ++    +V+    +        L     +D+ H I
Sbjct: 651 SLAARLKAAGVPILGTTPEAIDLAENRELFGEVLRKEHMNAPRFGTALSLEEALDAAHSI 710

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
             P +++P       G+ ++  D  +   + ++ +    D +     V G   +  ++  
Sbjct: 711 GYPVLVRPSYVLGGRGMEIVYDDAQLEKYVNRALNEAMADTV-----VSGRLPSPLLIDK 765

Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK--------------IPLDIYKEVQRL 230
              D  EI V     +  E  Y      H+  A               +  D  + ++  
Sbjct: 766 FLQDAIEIDV--DALFDGEELYIGGIMEHIEEAGVHSGDAACTLPPSTLSDDQIRRLREG 823

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283
                +  G RG+    + F      ++ +E N +   T     P  +   G 
Sbjct: 824 TRAIAEGCGVRGLINVQYAFMA--NTLYVIEANPRASRT----VPFASKATGV 870


>gi|167855248|ref|ZP_02478017.1| carbamoyl-phosphate synthase large subunit [Haemophilus parasuis
           29755]
 gi|167853612|gb|EDS24857.1| carbamoyl-phosphate synthase large subunit [Haemophilus parasuis
           29755]
          Length = 1066

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 51/278 (18%), Positives = 99/278 (35%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +              DV        R+V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYKVVLVNSNPATIMTDPNMADVTYIEPIEWRTVAKIIEKERPDAILP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      +L+   +    +   A   + D+ R KQ +   G+    S +
Sbjct: 89  TMGGQTALNCALDLSRNGVLKQFNVELIGASEDAIDKAEDRGRFKQAMEKIGLSCPKSFI 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     + +Q  +  P +I+P       G  +            +    +   +LLIEQ
Sbjct: 149 AHTLEEALKAQEAVGFPTLIRPSFTMGGSGGGIAYNRDEFLAICERGFEASPTHELLIEQ 208

Query: 171 YVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            V G  E    V+ D   + +   ++   D           +S  V PA+ +    Y+ +
Sbjct: 209 SVLGWKEYEMEVVRDKEDNCIIVCSIENFDPMGVHT----GDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RNASLAVLREIGVDTGGSNVQFAINPENGEMIVIEMNP 302



 Score = 60.1 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 28/193 (14%), Positives = 77/193 (39%), Gaps = 10/193 (5%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPL 133
            +    +   +   + D+ R ++++    +    +      +  +   + +  P V++P 
Sbjct: 652 GVNIIGTSADSIDAAEDRERFQKILHDLNLKQPANRTARNAQEAVALANEVGYPLVVRPS 711

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEI 192
                  + ++  D+ +   + ++ S ++   +L++ ++ + IE+    + D    V   
Sbjct: 712 YVLGGRAMQIVYNDEELNKYMREAVSVSNDSPILLDHFLNNAIEVDVDCICDGENMVIGG 771

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
            +   +    +    S +S   LPA  +  +I  E++R       A+G +G+    F   
Sbjct: 772 IMQHVE----QAGIHSGDSACSLPAYSLSGEILDEIRRQTKEMAFALGVKGLMNVQFAV- 826

Query: 252 PLSRKVFWLEINV 264
             +  V+ LE+N 
Sbjct: 827 -QNDVVYVLEVNP 838


>gi|126179586|ref|YP_001047551.1| pyruvate carboxylase subunit A [Methanoculleus marisnigri JR1]
 gi|125862380|gb|ABN57569.1| pyruvate carboxylase subunit A [Methanoculleus marisnigri JR1]
          Length = 491

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 34/224 (15%), Positives = 80/224 (35%), Gaps = 26/224 (11%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV----CP 109
            +H  +G   E+     ++E   + +             K+ SK+++   GVPV      
Sbjct: 79  AIHPGYGFLAENAGFAKLVEEEGLTFIGPSWKTIEALGSKIGSKKMMREAGVPVLPGTPE 138

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGD 164
            +            I  P ++K   GG  +G+ + + +  +   L     +  S++    
Sbjct: 139 GVTSVEEAKKVAAEIGYPVIVKASAGGGGIGMHIAENEGELEEALDAGMRIAQSAFG-DP 197

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK---IP 220
            + +E+Y+     +   V+ DA      +       Y  E      +   +  A    + 
Sbjct: 198 TIFVEKYLTKPRHIEIQVLADAKGHTVHL-------YDRECSIQRRHQKLLEEAPCPIMT 250

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             + +++   A  A +A   +     +FL+   +   +++E+N 
Sbjct: 251 PALREQMTVSAIAAAKAANYKNAGTVEFLY--ANGNYYFMEVNT 292


>gi|55980581|ref|YP_143878.1| carbamoyl phosphate synthase large subunit [Thermus thermophilus
           HB8]
 gi|81821888|sp|Q5SKN1|CARB_THET8 RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|55771994|dbj|BAD70435.1| carbamoyl-phosphate synthase large chain [Thermus thermophilus HB8]
          Length = 1028

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 57/293 (19%), Positives = 102/293 (34%), Gaps = 46/293 (15%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI---------DVD------------RSVGLV 45
           G ++E + S   G     AL  AG++V  +         D +              +  +
Sbjct: 21  GQAAEFDYS---GTQAVKALRGAGYRVVLVNSNPATIMTDPELAERTYIEPLDLEHLEGI 77

Query: 46  LAHLKPDLAFNVLHGNFG--------EDGLVQAILELLEIPYTHSGILASALSMDKMRSK 97
           LA   PD     L G  G        E+G++Q       +    +   A     D+   +
Sbjct: 78  LAREAPDALLPTLGGQTGLNLAMALHEEGILQKY----GVELIGAKAEAIRKGEDREAFQ 133

Query: 98  QVVSSCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
           + +   G+ V    LV      +     +  P V++P       G  +   +  +   L 
Sbjct: 134 EAMQRIGLEVPRGQLVGSVEEGLHFAREVGFPVVVRPSFTLGGTGGGIAHDEAELVEVLS 193

Query: 156 QSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEI-AVPKSDFYSYELKYSSLNSTH 213
           +  + +     L+E+ V G  E    VM D +  V  I ++   D           +S  
Sbjct: 194 RGLTLSPVHTALVEESVLGWKEFELEVMRDHADTVVIITSIENVDPMGVHT----GDSIT 249

Query: 214 VLPAK-IPLDIYKEVQRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           V PA+ +    Y+ ++  A    + IG   G S   F  DP + +   +E+N 
Sbjct: 250 VAPAQTLSDVEYQRMRDAAKAIIREIGVETGGSNIQFAVDPKTGRQVVIEMNP 302



 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 44/289 (15%), Positives = 106/289 (36%), Gaps = 36/289 (12%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVL-HGNFGEDGLVQAI--- 71
           AL++AG++   +         D D +  L    L  +   N++ H      G++  +   
Sbjct: 583 ALKEAGYETIMVNSNPETVSTDYDTADRLYFEPLTLEDVLNIVEHEKP--IGVIATLGGQ 640

Query: 72  --------LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTMDSQ 121
                   LE   +    +   A   + D+     +    G+P     +       +   
Sbjct: 641 TPLKLAKGLEEAGVRLLGTPFSAIHQAEDREAFHALCQRLGIPQPEGRVAQSPEEALRLA 700

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-WNHGDQLLIEQYVDG-IELTC 179
             +  P +++P        + V++ +  +   L +  +       +L++++++G +EL  
Sbjct: 701 PEVGFPLLVRPSYVLGGRAMQVVRDEGELKRYLEEVYAPLEERPSILLDRFLEGAVELDV 760

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
             + D    +    +   +       +S  ++T + P  +P +  K+V+        A+G
Sbjct: 761 DALSDGQEVMVAGIMEHVERAGV---HSGDSATLLPPVHVPEEALKKVRDYTRRLALALG 817

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
            RG+   +  +  +  +V+ LE N +   T     P ++   G    +L
Sbjct: 818 VRGL--LNVQYAVVGEEVYVLEANPRASRT----VPFVSKAIGVPLAKL 860


>gi|85709264|ref|ZP_01040329.1| acetyl/propionyl-CoA carboxylase, alpha subunit [Erythrobacter sp.
           NAP1]
 gi|85687974|gb|EAQ27978.1| acetyl/propionyl-CoA carboxylase, alpha subunit [Erythrobacter sp.
           NAP1]
          Length = 622

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 45/227 (19%), Positives = 89/227 (39%), Gaps = 26/227 (11%)

Query: 57  VLHGNFG---ED-GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            +H  +G   E+ G  QA+++   + +      +      K  +K+ + + GVPV P  L
Sbjct: 77  AIHPGYGFLSENAGFAQAVID-AGLIWVGPKPESIEAMGLKDAAKERMIAAGVPVTPGYL 135

Query: 113 -----VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHG 163
                V R T ++   I  P +IK + GG   G+  +         L     ++ +    
Sbjct: 136 GEDQSVERLTKEAGD-IGYPVLIKAVAGGGGKGMRKVDAAADFEAALESCRREAKASFSN 194

Query: 164 DQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPL 221
           D++L+E+++     +   V GD+  +V              L+          PA  +  
Sbjct: 195 DEVLLEKWITSPRHIEVQVFGDSHGNVV-----HLFERDCSLQRRHQKVIEEAPAPGMDE 249

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR----KVFWLEINV 264
              +E+   A  A +A+   G    +F+ D        ++F++E+N 
Sbjct: 250 ATREEICAAAVRAAKAVDYEGAGTIEFIADASEGLRADRIFFMEMNT 296


>gi|219670027|ref|YP_002460462.1| carbamoyl-phosphate synthase, large subunit [Desulfitobacterium
           hafniense DCB-2]
 gi|219540287|gb|ACL22026.1| carbamoyl-phosphate synthase, large subunit [Desulfitobacterium
           hafniense DCB-2]
          Length = 1065

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 48/315 (15%), Positives = 113/315 (35%), Gaps = 39/315 (12%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQIDVD---------------------RSVGLV 45
           G ++E + +   G     AL++ G +V  ++ +                       +  +
Sbjct: 27  GQAAEFDYA---GTQACRALQEEGVEVVLVNSNPATIMTDQEVADRIYIEPLTVEFLERI 83

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   +PD     + G  G +   Q     IL+   +    + + +   + D+   + ++ 
Sbjct: 84  IERERPDGIIATMGGQTGLNLAFQLAEKGILQRCGVQLMGTSLDSITKAEDREHFRSLMR 143

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G PV PS++V+     +     I  P +++P       G  +    + +         
Sbjct: 144 ELGEPVPPSVIVSDLEEALSFGEEIGYPVIVRPAYTLGGTGGGIAHNREQLKEIAKSGLQ 203

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +  DQ+L+E+ V G  E+   V+ D+  +   I     +       ++  +S  V P +
Sbjct: 204 ASLIDQILVEKSVAGWKEIEYEVLRDSQGNCITIC--NMENMDPVGVHT-GDSMVVAPCQ 260

Query: 219 -IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
            +     + ++  +     A+G  G     +   P   +   +E+N  P ++  S     
Sbjct: 261 TLTDREVQALRTSSRKIVAALGIEGGCNVQYALHPERLEYVVIEVN--PRLSRSS--ALA 316

Query: 278 AAYAGYSFRELLLWM 292
           +   GY   ++   +
Sbjct: 317 SKATGYPIAKVAAKI 331



 Score = 45.5 bits (107), Expect = 0.009,   Method: Composition-based stats.
 Identities = 31/219 (14%), Positives = 83/219 (37%), Gaps = 19/219 (8%)

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSS 138
            +GI     + ++ +  +V+ + G         +     ++    I  P +I+P      
Sbjct: 661 GTGIEDIDRAEERGQFDEVLHTIGAKRPKGGQASSLAEAVEVAARIGYPLMIRPSFVLGG 720

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA---SLDVTEIAVP 195
             + ++     +   + ++ +   G +L ++QY+ G E+    + D    SL      + 
Sbjct: 721 RAMEIVYSASELENVVNRAMADFPGQELWMDQYLVGKEVEVDAISDGKNVSLPGIMEHLE 780

Query: 196 KSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
           ++  +S        +S  V P + +   + + +  L     +A+   G+    ++     
Sbjct: 781 RAGVHS-------GDSIAVYPPQTLSEPLIQRITLLTTEIARALNVIGLLNIQYVI--FQ 831

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            +V+ +E+N +   T     P ++   G S  +    ++
Sbjct: 832 DEVYVIEVNPRSSRT----VPFISKVTGLSIVDYATEVI 866


>gi|329997549|ref|ZP_08302825.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Klebsiella sp.
           MS 92-3]
 gi|328539009|gb|EGF65055.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Klebsiella sp.
           MS 92-3]
          Length = 449

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 42/222 (18%), Positives = 82/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         L  DK+ +   +   GVP  P    
Sbjct: 77  AIHPGYGFLSENANFAEQVERSGFIFIGPKADTIRLMGDKVPAITAMKKAGVPTVPGSDG 136

Query: 112 -LVNRFTMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
            L +    +  H   I  P +IK   GG   G+ V++ D  +   +     ++ +  + D
Sbjct: 137 PLGDDMDANRAHAKRIGYPVIIKASGGGGGRGMRVVRSDAELAQSISMTKAEAKAAFNND 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+Y++    +   V+ D   +   +A           K          PA  I  +
Sbjct: 197 MVYMEKYLENPRHIEIQVLADGQGNAIYLAERDCSMQRRHQK-----VVEEAPAPGITPE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + + +      A   IG RG    +FLF   + + +++E+N 
Sbjct: 252 LRRYIGERCAKACVDIGYRGAGTFEFLF--ENGEFYFIEMNT 291


>gi|319952883|ref|YP_004164150.1| acetyl-CoA carboxylase, biotin carboxylase [Cellulophaga algicola
           DSM 14237]
 gi|319421543|gb|ADV48652.1| acetyl-CoA carboxylase, biotin carboxylase [Cellulophaga algicola
           DSM 14237]
          Length = 449

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 78/220 (35%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-SIL 112
            +H  +G   E+     I    +I +  +         DK  +K  +   GVP  P S  
Sbjct: 77  AIHPGYGFLSENSKFSRICAEHDIKFIGASGDQIDKMGDKATAKITMKEAGVPCVPGSDG 136

Query: 113 VNRFTMDSQHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSWNHGDQ 165
           + +   D++ +   +  P +IK   GG   G+  +  +  +       + ++ +      
Sbjct: 137 LLKDVADAKKIAKKMGYPVMIKATAGGGGKGMRAVWSEDKLEDLYNSAVQEAKAAFGNGG 196

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+ ++    +   ++GD       ++           K     +       +   + 
Sbjct: 197 MYMEKLIEEPRHIEIQIVGDQYGKACHLSERDCSIQRRHQK----LTEETPSPFMTDKLR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            E+   A  A + I   G    +FL D   R  +++E+N 
Sbjct: 253 DEMGAAAVKAAEFIKYEGAGTIEFLVDKH-RNFYFMEMNT 291


>gi|257865884|ref|ZP_05645537.1| acetyl-CoA carboxylase biotin carboxylase subunit [Enterococcus
           casseliflavus EC30]
 gi|257872218|ref|ZP_05651871.1| acetyl-CoA carboxylase biotin carboxylase subunit [Enterococcus
           casseliflavus EC10]
 gi|257875511|ref|ZP_05655164.1| acetyl-CoA carboxylase biotin carboxylase subunit [Enterococcus
           casseliflavus EC20]
 gi|257799818|gb|EEV28870.1| acetyl-CoA carboxylase biotin carboxylase subunit [Enterococcus
           casseliflavus EC30]
 gi|257806382|gb|EEV35204.1| acetyl-CoA carboxylase biotin carboxylase subunit [Enterococcus
           casseliflavus EC10]
 gi|257809677|gb|EEV38497.1| acetyl-CoA carboxylase biotin carboxylase subunit [Enterococcus
           casseliflavus EC20]
          Length = 454

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 80/220 (36%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  FG   E+    A+ E   I +            +K+ +++++    VPV P    
Sbjct: 77  AIHPGFGFLSENSRFAAMCEECNIVFIGPKSETIDAMGNKINARRLMIEAEVPVIPGSKG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSWNHGDQ 165
            I      +     I  P ++K   GG   GI  +   +++P        ++ +    D+
Sbjct: 137 AISDVEEALTIAEEIGYPVMLKAAAGGGGKGIRKVADKEALPHHFASAQQEAKAAFGNDE 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+ +     +   V+GD+  ++  +            K             I     
Sbjct: 197 MYIEKIIYPARHIEVQVLGDSFGNIIHLGERDCSLQRNNQKVL----EESPSVVISESKR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            E+   A  A QA+G R     +FL    + + +++E+N 
Sbjct: 253 AELGEAAVRAAQAVGYRNAGTIEFLM-ADTGEFYFMEMNT 291


>gi|256616679|ref|ZP_05473525.1| acetyl-CoA carboxylase [Enterococcus faecalis ATCC 4200]
 gi|256596206|gb|EEU15382.1| acetyl-CoA carboxylase [Enterococcus faecalis ATCC 4200]
          Length = 456

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 75/220 (34%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  FG   E+    ++ E   I +            +K+ ++Q++    VPV P    
Sbjct: 77  AIHPGFGFLSENSQFASMCEECNITFVGPKAETIDAMGNKINARQLMQKAKVPVIPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL----DLLQSSSWNHGDQ 165
            I      +     I  P ++K   GG   GI  +   + +P        ++ +    D 
Sbjct: 137 VIDSVEEALTIAEEIGYPVMLKAAAGGGGKGIRKVLSKEELPKHFTSAQQEAKAAFGNDD 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+ +     +   ++GD    V  +            K             I  +  
Sbjct: 197 MYLEKIIYPARHIEVQILGDQYGHVIHLGERDCSLQRNNQKVL----EESPSIAISEEKR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +   A  A QA+        +FL DP     +++E+N 
Sbjct: 253 QMLGETAVRAAQAVHYENAGTIEFLMDPA-GDFYFMEMNT 291


>gi|86357157|ref|YP_469049.1| putative carbamoyl-phosphate-synthetase protein [Rhizobium etli CFN
           42]
 gi|86281259|gb|ABC90322.1| putative carbamoyl-phosphate-synthetase protein [Rhizobium etli CFN
           42]
          Length = 397

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 32/224 (14%), Positives = 84/224 (37%), Gaps = 15/224 (6%)

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKP 132
           E L  P   S +  + +   K   +       +P   S+ ++  +      +  P ++KP
Sbjct: 90  EKLGFPRFDS-METATIIHTKQAFRNFTEQYNIPAPRSVRLHGDSPVETGALRYPLLVKP 148

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTE 191
                  G+  +     +   +  +   +   +++IE++++G +      + D  +    
Sbjct: 149 SDSFGGRGVTKVFDRTELTDAVADARRNSRAAEIVIEEFIEGSLHSHSAFIKDQEIVFDV 208

Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR-GISRSDFLF 250
                 D Y     Y   +S H  P+++   +  + + +     + +G + G+  + FL 
Sbjct: 209 FV----DEYCTVYPYQVDSSNH--PSRLSETVRSKTRAIMARVVKLLGLQDGLIHTQFL- 261

Query: 251 DPLSRKVFWLE-INVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
                 V+ +E +   PG    S+  +     G  + +L++ ++
Sbjct: 262 -SHDDDVWIVECMRRCPGDLYGSLVDQSL---GIDYADLVVTLL 301


>gi|16762139|ref|NP_457756.1| acetyl-CoA carboxylase biotin carboxylase subunit [Salmonella
           enterica subsp. enterica serovar Typhi str. CT18]
 gi|16766675|ref|NP_462290.1| acetyl-CoA carboxylase biotin carboxylase subunit [Salmonella
           enterica subsp. enterica serovar Typhimurium str. LT2]
 gi|29143628|ref|NP_806970.1| acetyl-CoA carboxylase biotin carboxylase subunit [Salmonella
           enterica subsp. enterica serovar Typhi str. Ty2]
 gi|56415307|ref|YP_152382.1| acetyl-CoA carboxylase biotin carboxylase subunit [Salmonella
           enterica subsp. enterica serovar Paratyphi A str. ATCC
           9150]
 gi|161506066|ref|YP_001573178.1| acetyl-CoA carboxylase biotin carboxylase subunit [Salmonella
           enterica subsp. arizonae serovar 62:z4,z23:-- str.
           RSK2980]
 gi|161616402|ref|YP_001590367.1| acetyl-CoA carboxylase biotin carboxylase subunit [Salmonella
           enterica subsp. enterica serovar Paratyphi B str. SPB7]
 gi|167552912|ref|ZP_02346663.1| acetyl-CoA carboxylase, biotin carboxylase [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA29]
 gi|167993967|ref|ZP_02575060.1| acetyl-CoA carboxylase, biotin carboxylase [Salmonella enterica
           subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168233966|ref|ZP_02659024.1| acetyl-CoA carboxylase, biotin carboxylase [Salmonella enterica
           subsp. enterica serovar Kentucky str. CDC 191]
 gi|168239408|ref|ZP_02664466.1| acetyl-CoA carboxylase, biotin carboxylase [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. SL480]
 gi|168245217|ref|ZP_02670149.1| acetyl-CoA carboxylase, biotin carboxylase [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL486]
 gi|168262596|ref|ZP_02684569.1| acetyl-CoA carboxylase, biotin carboxylase [Salmonella enterica
           subsp. enterica serovar Hadar str. RI_05P066]
 gi|168463383|ref|ZP_02697300.1| acetyl-CoA carboxylase, biotin carboxylase [Salmonella enterica
           subsp. enterica serovar Newport str. SL317]
 gi|168822721|ref|ZP_02834721.1| acetyl-CoA carboxylase, biotin carboxylase [Salmonella enterica
           subsp. enterica serovar Weltevreden str. HI_N05-537]
 gi|194444408|ref|YP_002042635.1| acetyl-CoA carboxylase biotin carboxylase subunit [Salmonella
           enterica subsp. enterica serovar Newport str. SL254]
 gi|194447902|ref|YP_002047408.1| acetyl-CoA carboxylase biotin carboxylase subunit [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL476]
 gi|194471592|ref|ZP_03077576.1| acetyl-CoA carboxylase, biotin carboxylase [Salmonella enterica
           subsp. enterica serovar Kentucky str. CVM29188]
 gi|194737082|ref|YP_002116328.1| acetyl-CoA carboxylase biotin carboxylase subunit [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           CVM19633]
 gi|197249296|ref|YP_002148304.1| acetyl-CoA carboxylase biotin carboxylase subunit [Salmonella
           enterica subsp. enterica serovar Agona str. SL483]
 gi|197263196|ref|ZP_03163270.1| acetyl-CoA carboxylase, biotin carboxylase [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA23]
 gi|197364237|ref|YP_002143874.1| acetyl-CoA carboxylase biotin carboxylase subunit [Salmonella
           enterica subsp. enterica serovar Paratyphi A str.
           AKU_12601]
 gi|198243570|ref|YP_002217349.1| acetyl-CoA carboxylase biotin carboxylase subunit [Salmonella
           enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|200388475|ref|ZP_03215087.1| acetyl-CoA carboxylase, biotin carboxylase [Salmonella enterica
           subsp. enterica serovar Virchow str. SL491]
 gi|204931207|ref|ZP_03222001.1| acetyl-CoA carboxylase, biotin carboxylase [Salmonella enterica
           subsp. enterica serovar Javiana str. GA_MM04042433]
 gi|205354281|ref|YP_002228082.1| acetyl-CoA carboxylase biotin carboxylase subunit [Salmonella
           enterica subsp. enterica serovar Gallinarum str. 287/91]
 gi|207858628|ref|YP_002245279.1| acetyl-CoA carboxylase biotin carboxylase subunit [Salmonella
           enterica subsp. enterica serovar Enteritidis str.
           P125109]
 gi|213051967|ref|ZP_03344845.1| acetyl-CoA carboxylase biotin carboxylase subunit [Salmonella
           enterica subsp. enterica serovar Typhi str. E00-7866]
 gi|213419161|ref|ZP_03352227.1| acetyl-CoA carboxylase biotin carboxylase subunit [Salmonella
           enterica subsp. enterica serovar Typhi str. E01-6750]
 gi|213428303|ref|ZP_03361053.1| acetyl-CoA carboxylase biotin carboxylase subunit [Salmonella
           enterica subsp. enterica serovar Typhi str. E02-1180]
 gi|213584323|ref|ZP_03366149.1| acetyl-CoA carboxylase biotin carboxylase subunit [Salmonella
           enterica subsp. enterica serovar Typhi str. E98-0664]
 gi|213618704|ref|ZP_03372530.1| acetyl-CoA carboxylase biotin carboxylase subunit [Salmonella
           enterica subsp. enterica serovar Typhi str. E98-2068]
 gi|213853019|ref|ZP_03382551.1| acetyl-CoA carboxylase biotin carboxylase subunit [Salmonella
           enterica subsp. enterica serovar Typhi str. M223]
 gi|238913540|ref|ZP_04657377.1| acetyl-CoA carboxylase biotin carboxylase subunit [Salmonella
           enterica subsp. enterica serovar Tennessee str.
           CDC07-0191]
 gi|289829144|ref|ZP_06546799.1| acetyl-CoA carboxylase biotin carboxylase subunit [Salmonella
           enterica subsp. enterica serovar Typhi str. E98-3139]
 gi|25293952|pir||AI0912 biotin carboxylase [imported] - Salmonella enterica subsp. enterica
           serovar Typhi (strain CT18)
 gi|16421941|gb|AAL22249.1| acetyl CoA carboxylase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|16504442|emb|CAD07895.1| biotin carboxylase [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|29139263|gb|AAO70830.1| biotin carboxylase [Salmonella enterica subsp. enterica serovar
           Typhi str. Ty2]
 gi|56129564|gb|AAV79070.1| biotin carboxylase [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|160867413|gb|ABX24036.1| hypothetical protein SARI_04253 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
 gi|161365766|gb|ABX69534.1| hypothetical protein SPAB_04211 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194403071|gb|ACF63293.1| acetyl-CoA carboxylase, biotin carboxylase [Salmonella enterica
           subsp. enterica serovar Newport str. SL254]
 gi|194406206|gb|ACF66425.1| acetyl-CoA carboxylase, biotin carboxylase [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL476]
 gi|194457956|gb|EDX46795.1| acetyl-CoA carboxylase, biotin carboxylase [Salmonella enterica
           subsp. enterica serovar Kentucky str. CVM29188]
 gi|194712584|gb|ACF91805.1| acetyl-CoA carboxylase, biotin carboxylase [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|195633274|gb|EDX51688.1| acetyl-CoA carboxylase, biotin carboxylase [Salmonella enterica
           subsp. enterica serovar Newport str. SL317]
 gi|197095714|emb|CAR61283.1| biotin carboxylase [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|197212999|gb|ACH50396.1| acetyl-CoA carboxylase, biotin carboxylase [Salmonella enterica
           subsp. enterica serovar Agona str. SL483]
 gi|197241451|gb|EDY24071.1| acetyl-CoA carboxylase, biotin carboxylase [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA23]
 gi|197287884|gb|EDY27272.1| acetyl-CoA carboxylase, biotin carboxylase [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. SL480]
 gi|197938086|gb|ACH75419.1| acetyl-CoA carboxylase, biotin carboxylase [Salmonella enterica
           subsp. enterica serovar Dublin str. CT_02021853]
 gi|199605573|gb|EDZ04118.1| acetyl-CoA carboxylase, biotin carboxylase [Salmonella enterica
           subsp. enterica serovar Virchow str. SL491]
 gi|204319974|gb|EDZ05180.1| acetyl-CoA carboxylase, biotin carboxylase [Salmonella enterica
           subsp. enterica serovar Javiana str. GA_MM04042433]
 gi|205274062|emb|CAR39068.1| biotin carboxylase [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|205322505|gb|EDZ10344.1| acetyl-CoA carboxylase, biotin carboxylase [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA29]
 gi|205328113|gb|EDZ14877.1| acetyl-CoA carboxylase, biotin carboxylase [Salmonella enterica
           subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205332015|gb|EDZ18779.1| acetyl-CoA carboxylase, biotin carboxylase [Salmonella enterica
           subsp. enterica serovar Kentucky str. CDC 191]
 gi|205336040|gb|EDZ22804.1| acetyl-CoA carboxylase, biotin carboxylase [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL486]
 gi|205340891|gb|EDZ27655.1| acetyl-CoA carboxylase, biotin carboxylase [Salmonella enterica
           subsp. enterica serovar Weltevreden str. HI_N05-537]
 gi|205348440|gb|EDZ35071.1| acetyl-CoA carboxylase, biotin carboxylase [Salmonella enterica
           subsp. enterica serovar Hadar str. RI_05P066]
 gi|206710431|emb|CAR34789.1| biotin carboxylase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|261248543|emb|CBG26381.1| biotin carboxylase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. D23580]
 gi|267995588|gb|ACY90473.1| acetyl-CoA carboxylase biotin carboxylase subunit [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           14028S]
 gi|312914408|dbj|BAJ38382.1| acetyl-CoA carboxylase biotin carboxylase subunit [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           T000240]
 gi|320087828|emb|CBY97592.1| acetyl-CoA carboxylase, biotin carboxylase [Salmonella enterica
           subsp. enterica serovar Weltevreden str. 2007-60-3289-1]
 gi|321225198|gb|EFX50257.1| Biotin carboxylase of acetyl-CoA carboxylase [Salmonella enterica
           subsp. enterica serovar Typhimurium str. TN061786]
 gi|322614521|gb|EFY11451.1| acetyl-CoA carboxylase biotin carboxylase subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           315996572]
 gi|322618257|gb|EFY15148.1| acetyl-CoA carboxylase biotin carboxylase subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           495297-1]
 gi|322625970|gb|EFY22784.1| acetyl-CoA carboxylase biotin carboxylase subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           495297-3]
 gi|322626740|gb|EFY23537.1| acetyl-CoA carboxylase biotin carboxylase subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           495297-4]
 gi|322631308|gb|EFY28068.1| acetyl-CoA carboxylase biotin carboxylase subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           515920-1]
 gi|322635425|gb|EFY32139.1| acetyl-CoA carboxylase biotin carboxylase subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           515920-2]
 gi|322643425|gb|EFY39989.1| acetyl-CoA carboxylase biotin carboxylase subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str. 531954]
 gi|322647271|gb|EFY43769.1| acetyl-CoA carboxylase biotin carboxylase subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           NC_MB110209-0054]
 gi|322649735|gb|EFY46162.1| acetyl-CoA carboxylase biotin carboxylase subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           OH_2009072675]
 gi|322655591|gb|EFY51897.1| acetyl-CoA carboxylase biotin carboxylase subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           CASC_09SCPH15965]
 gi|322658379|gb|EFY54644.1| acetyl-CoA carboxylase biotin carboxylase subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str. 19N]
 gi|322664397|gb|EFY60593.1| acetyl-CoA carboxylase biotin carboxylase subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           81038-01]
 gi|322667383|gb|EFY63545.1| acetyl-CoA carboxylase biotin carboxylase subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MD_MDA09249507]
 gi|322674631|gb|EFY70723.1| acetyl-CoA carboxylase biotin carboxylase subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str. 414877]
 gi|322675738|gb|EFY71811.1| acetyl-CoA carboxylase biotin carboxylase subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str. 366867]
 gi|322682374|gb|EFY78397.1| acetyl-CoA carboxylase biotin carboxylase subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str. 413180]
 gi|322684761|gb|EFY80762.1| acetyl-CoA carboxylase biotin carboxylase subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str. 446600]
 gi|323131742|gb|ADX19172.1| acetyl-CoA carboxylase biotin carboxylase subunit [Salmonella
           enterica subsp. enterica serovar Typhimurium str. 4/74]
 gi|323196161|gb|EFZ81321.1| acetyl-CoA carboxylase biotin carboxylase subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           609458-1]
 gi|323196727|gb|EFZ81872.1| acetyl-CoA carboxylase biotin carboxylase subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           556150-1]
 gi|323204364|gb|EFZ89373.1| acetyl-CoA carboxylase biotin carboxylase subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str. 609460]
 gi|323207712|gb|EFZ92659.1| acetyl-CoA carboxylase biotin carboxylase subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           507440-20]
 gi|323209998|gb|EFZ94903.1| acetyl-CoA carboxylase biotin carboxylase subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str. 556152]
 gi|323214287|gb|EFZ99040.1| acetyl-CoA carboxylase biotin carboxylase subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB101509-0077]
 gi|323219036|gb|EGA03542.1| acetyl-CoA carboxylase biotin carboxylase subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB102109-0047]
 gi|323225042|gb|EGA09295.1| acetyl-CoA carboxylase biotin carboxylase subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB110209-0055]
 gi|323230394|gb|EGA14513.1| acetyl-CoA carboxylase biotin carboxylase subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB111609-0052]
 gi|323233370|gb|EGA17464.1| acetyl-CoA carboxylase biotin carboxylase subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           2009083312]
 gi|323239407|gb|EGA23457.1| acetyl-CoA carboxylase biotin carboxylase subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           2009085258]
 gi|323242342|gb|EGA26368.1| acetyl-CoA carboxylase biotin carboxylase subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           315731156]
 gi|323247304|gb|EGA31269.1| acetyl-CoA carboxylase biotin carboxylase subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2009159199]
 gi|323250394|gb|EGA34278.1| acetyl-CoA carboxylase biotin carboxylase subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008282]
 gi|323256842|gb|EGA40557.1| acetyl-CoA carboxylase biotin carboxylase subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008283]
 gi|323263874|gb|EGA47393.1| acetyl-CoA carboxylase biotin carboxylase subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008284]
 gi|323264105|gb|EGA47613.1| acetyl-CoA carboxylase biotin carboxylase subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008285]
 gi|323271636|gb|EGA55055.1| acetyl-CoA carboxylase biotin carboxylase subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008287]
 gi|326625128|gb|EGE31473.1| acetyl-CoA carboxylase biotin carboxylase subunit [Salmonella
           enterica subsp. enterica serovar Dublin str. 3246]
 gi|326629404|gb|EGE35747.1| acetyl-CoA carboxylase biotin carboxylase subunit [Salmonella
           enterica subsp. enterica serovar Gallinarum str. 9]
 gi|332990238|gb|AEF09221.1| acetyl-CoA carboxylase biotin carboxylase subunit [Salmonella
           enterica subsp. enterica serovar Typhimurium str. UK-1]
          Length = 449

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 42/222 (18%), Positives = 81/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         L  DK+ +   +   GVP  P    
Sbjct: 77  AIHPGYGFLSENANFAEQVERSGFIFIGPKADTIRLMGDKVSAITAMKKAGVPTVPGSDG 136

Query: 112 -LVNRFTMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
            L +    +  H   I  P +IK   GG   G+ V++ D  +   +     ++ +    D
Sbjct: 137 PLGDDMNANRAHAKRIGYPVIIKASGGGGGRGMRVVRSDAELAQSISMTKAEAKAAFSND 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+Y++    +   V+ D   +   +A           K          PA  I  +
Sbjct: 197 MVYMEKYLENPRHIEIQVLADGQGNAIYLAERDCSMQRRHQK-----VVEEAPAPGITPE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + + +      A   IG RG    +FLF   + + +++E+N 
Sbjct: 252 LRRYIGERCAKACVDIGYRGAGTFEFLF--ENGEFYFIEMNT 291


>gi|15603370|ref|NP_246444.1| carbamoyl phosphate synthase large subunit [Pasteurella multocida
           subsp. multocida str. Pm70]
 gi|22095528|sp|Q9CKV0|CARB_PASMU RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|12721891|gb|AAK03589.1| CarB [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 1068

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 50/278 (17%), Positives = 99/278 (35%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +         D D            R+V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYKVVLVNSNPATIMTDPDMADVTYIEPIEWRTVEKIIEKERPDAILP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      +L+   +    +   A   + D+ R K+ +   G+    S +
Sbjct: 89  TMGGQTALNCALDLSKNGVLKKYNVELIGAKEDAIDKAEDRGRFKEAMEKIGLSTPKSFV 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +       +Q  +  P +I+P       G  +            +    +   +LLIEQ
Sbjct: 149 CHTLEEAWAAQSEVGFPTLIRPSFTMGGSGGGIAYNKDEFYAICERGFDASPTHELLIEQ 208

Query: 171 YVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            V G  E    V+ D + + +   ++   D           +S  V PA+ +    Y+ +
Sbjct: 209 SVLGWKEYEMEVVRDKADNCIIVCSIENFDPMGVHT----GDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RNASIAVLREIGVDTGGSNVQFAINPENGEMIVIEMNP 302



 Score = 62.8 bits (152), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 37/262 (14%), Positives = 92/262 (35%), Gaps = 27/262 (10%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH-----GNFGEDG---- 66
           AL +AGF+   +         D D S  L    L  +    ++H     G     G    
Sbjct: 582 ALREAGFETIMVNCNPETVSTDFDTSDRLYFEPLTLEDVLEIIHVEKPHGVIVHYGGQTP 641

Query: 67  -LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--QHL 123
             +   L    +    +   +   + D+ R +Q++    +    +               
Sbjct: 642 LKLANDLHANGVNIIGTSADSIDAAEDRERFQQILHKLHLKQPTNRTARNAEEAVKLAEE 701

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVM 182
           +  P V++P        + ++     +   + ++ S ++   +L++ ++ + IE+    +
Sbjct: 702 VGYPLVVRPSYVLGGRAMQIVYNVDELQRYMREAVSVSNDSPILLDHFLNNAIEVDVDCI 761

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D +  V    +   +       +S  ++  + P  +  ++  E++R       A+G +G
Sbjct: 762 CDGAEVVIGGIMQHIEQAGI---HSGDSACSLPPYSLSQEVQDEIRRQTAEMAFALGVKG 818

Query: 243 ISRSDFLFDPLSRKVFWLEINV 264
           +    F        ++ LE+N 
Sbjct: 819 LMNVQFAV--QDGVIYVLEVNP 838


>gi|126455667|ref|YP_001074315.1| acetyl-CoA carboxylase biotin carboxylase subunit [Burkholderia
           pseudomallei 1106a]
 gi|167826715|ref|ZP_02458186.1| acetyl-CoA carboxylase biotin carboxylase subunit [Burkholderia
           pseudomallei 9]
 gi|167848232|ref|ZP_02473740.1| acetyl-CoA carboxylase biotin carboxylase subunit [Burkholderia
           pseudomallei B7210]
 gi|167913473|ref|ZP_02500564.1| acetyl-CoA carboxylase biotin carboxylase subunit [Burkholderia
           pseudomallei 112]
 gi|226194703|ref|ZP_03790297.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Burkholderia
           pseudomallei Pakistan 9]
 gi|242313390|ref|ZP_04812407.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Burkholderia
           pseudomallei 1106b]
 gi|126229435|gb|ABN92848.1| acetyl-CoA carboxylase, biotin carboxylase [Burkholderia
           pseudomallei 1106a]
 gi|225933269|gb|EEH29262.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Burkholderia
           pseudomallei Pakistan 9]
 gi|242136629|gb|EES23032.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Burkholderia
           pseudomallei 1106b]
          Length = 481

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 77/220 (35%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+    A +E   + +        A   DK R+++     GVP  P    
Sbjct: 92  AIHPGYGFLSENADFAAQVEAAGLIFVGPPARVIATMGDKARARETARRAGVPTVPGSEG 151

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK----DQSIPLDLLQSSSWNHGDQ 165
            +       +    I  P +IK   GG   GI V          +PL   ++ +      
Sbjct: 152 VVASLDGAREVAARIGYPVMIKAAAGGGGRGIRVAHDAAQLAAQLPLAQREAQAAFGDGG 211

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+++     +   ++GD   +V  +   +        K             +   + 
Sbjct: 212 VYLERFIARARHIEVQILGDGE-NVIHLFERECSLQRRRQKIL----EEAPSPSLTPALR 266

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +   A    + +  RG    ++LFD    +++++E+N 
Sbjct: 267 DALCASATRLARQVSYRGAGTLEYLFDDARGELYFIEMNT 306


>gi|327462491|gb|EGF08815.1| carbamoyl-phosphate synthase, large subunit [Streptococcus
           sanguinis SK1]
          Length = 1059

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 23/224 (10%), Positives = 72/224 (32%), Gaps = 11/224 (4%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYV 129
           L    +    + +     + D+   +Q +    +P  P           ++   I  P +
Sbjct: 646 LSKAGVKILGTQVADLDRAEDRDLFEQALKELDIPQPPGQTATNEEEAVEAARKIGFPVL 705

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           ++P        + +++ +  +   +  +   +    +L++ Y+ G E     + D    +
Sbjct: 706 VRPSYVLGGRAMEIVENEADLRSYMRTAVKASPDHPVLVDSYIVGDECEVDAISDGRQVL 765

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
               +   +       +S  +     P  +   +   +          + C G+    F+
Sbjct: 766 IPGIMEHIERAGV---HSGDSMAAYPPQTLSQKVKDIIADYTKRLALGLNCIGMMNIQFV 822

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
                 +V+ +E+N +   T     P ++        ++   ++
Sbjct: 823 I--KDEQVYVIEVNPRASRT----VPFLSKVTDIPMAQVATRLI 860



 Score = 65.9 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 37/206 (17%), Positives = 78/206 (37%), Gaps = 9/206 (4%)

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147
           + D+   KQ++   G P+  S +VN     ++    I  P +++P       G  +   +
Sbjct: 126 AEDRDLFKQLMEELGQPIPESEIVNTVDEALEFAAGIGYPVIVRPAFTLGGTGGGICSNE 185

Query: 148 QSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
           + +          +   Q LIE+ + G  E+   VM D + +   + V   + +     +
Sbjct: 186 EELQEIAENGLKLSPVTQCLIERSIAGFKEIEYEVMRDGADNA--LVVCNMENFDPVGIH 243

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
           +  +        I    Y+ ++  +    +A+   G        DP S K + +E+N  P
Sbjct: 244 TGDSIVFAPSQTISDYEYQMLRDASLKIIRALKIEGGCNVQLALDPHSFKYYVIEVN--P 301

Query: 267 GMTPVSIFPEMAAYAGYSFRELLLWM 292
            ++  S     +   GY   +L   +
Sbjct: 302 RVSRSS--ALASKATGYPIAKLAAKI 325


>gi|309364826|emb|CAP24358.2| hypothetical protein CBG_03464 [Caenorhabditis briggsae AF16]
          Length = 686

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 77/221 (34%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H  +G   E+           + +      A      K  SKQ++    VPV      
Sbjct: 94  AIHPGYGFLSENAGFAERCAQAGLVFIGPPAQAIRDMGAKNVSKQIMEDAKVPVVKGFHG 153

Query: 113 ---VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
               +         I  P ++K + GG   G+ +   ++     L  + +        D+
Sbjct: 154 EDQSDANLKKKSQEIGYPVMLKAVYGGGGKGMRIAWNEEEFDEKLASARNEAKKSFGNDE 213

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDI 223
           +L+E++V+    +   V GD   +   +           ++          PA  +  + 
Sbjct: 214 MLVEKFVERPRHVEVQVFGDHHGNYVHLWE-----RDCSVQRRHQKIIEEAPAPNMTHEN 268

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             ++   A  A  A+G  G    +F+ DP   + +++E+N 
Sbjct: 269 RLKLGESAVRAAAAVGYVGAGTVEFIMDPR-GEFYFMEMNT 308


>gi|224585178|ref|YP_002638977.1| acetyl-CoA carboxylase biotin carboxylase subunit [Salmonella
           enterica subsp. enterica serovar Paratyphi C strain
           RKS4594]
 gi|224469706|gb|ACN47536.1| acetyl-CoA carboxylase [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
          Length = 449

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 42/222 (18%), Positives = 81/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         L  DK+ +   +   GVP  P    
Sbjct: 77  AIHPGYGFLSENANFAEQVERSGFIFIGPKADTIRLMGDKVSAITAMKKAGVPTVPGSDG 136

Query: 112 -LVNRFTMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
            L +    +  H   I  P +IK   GG   G+ V++ D  +   +     ++ +    D
Sbjct: 137 PLGDDMNANRAHAKRIGYPVIIKASGGGGGRGMRVVRSDAELAQSISMTKAEAKAAFSND 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+Y++    +   V+ D   +   +A           K          PA  I  +
Sbjct: 197 MVYMEKYLENPRHIEIQVLADGQGNAIYLAERDCSMQRRHQK-----VVEEAPAPGITPE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + + +      A   IG RG    +FLF   + + +++E+N 
Sbjct: 252 LRRYIGERCAKACVDIGYRGAGTFEFLF--ENGEFYFIEMNT 291


>gi|254483025|ref|ZP_05096260.1| Carbamoyl-phosphate synthase L chain, ATP binding domain protein
           [marine gamma proteobacterium HTCC2148]
 gi|214036710|gb|EEB77382.1| Carbamoyl-phosphate synthase L chain, ATP binding domain protein
           [marine gamma proteobacterium HTCC2148]
          Length = 664

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 75/221 (33%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+       E   + +      A  L  +K  +K+ +    VP  P    
Sbjct: 79  AVHPGYGFLSENADFACACEAAGLIFIGPSPDAIRLMGNKAEAKRRMLDAKVPCVPGYEG 138

Query: 112 --LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGDQ 165
               +R  +     IS P ++K   GG   G+ ++     +     L   ++ S     +
Sbjct: 139 ADQSDRALIAEGEKISAPLMVKAAAGGGGRGMRLVNDMAELVNAIKLARAEAESAFGNGE 198

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           L++E+ +     +   V  D   +               ++          P   +   +
Sbjct: 199 LILEKAIVRPRHVEVQVFADTQGNTI-----HLGERDCSVQRRHQKVVEEAPCPVMTDTL 253

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             E+   A  A ++I  RG    +FL D      ++LE+N 
Sbjct: 254 RAEMGAAAVAAAKSIHYRGAGTVEFLLDEK-GTFYFLEMNT 293


>gi|196247705|ref|ZP_03146407.1| carbamoyl-phosphate synthase, large subunit [Geobacillus sp.
           G11MC16]
 gi|196212489|gb|EDY07246.1| carbamoyl-phosphate synthase, large subunit [Geobacillus sp.
           G11MC16]
          Length = 1065

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 32/218 (14%), Positives = 80/218 (36%), Gaps = 14/218 (6%)

Query: 68  VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC--PSILVNRFTMDSQHLIS 125
           + A LE   +    + +     + D+ + +QV+S  G+P     + +     +     I 
Sbjct: 642 LAAELEARGVRLLGTTLEDVDRAEDRDKFEQVLSELGIPKPAGKTAVSVEEAVAIAEEIG 701

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            P +++P        + ++   + +   +  +   N    +LI++Y+ G E+    + D 
Sbjct: 702 YPVLVRPSYVLGGRAMEIVYGQEELLHYMEHAVRVNPQHPVLIDRYITGKEVEVDAISDG 761

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGIS 244
              V    +   +           +S  V P + +  D+ +++        + +   G+ 
Sbjct: 762 ETVVIPGIMEHIERAGVHS----GDSIAVYPPQTLSADVIEKIVDYTVKLARGLRIVGLL 817

Query: 245 RSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277
              F+       V+ LE+N       P ++ ++  P  
Sbjct: 818 NIQFVISDSD--VYVLEVNPRSSRTVPFLSKITGVPMA 853



 Score = 70.2 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 54/297 (18%), Positives = 115/297 (38%), Gaps = 36/297 (12%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL++ G+KV  ++ +                       V  ++   +PD     L G  G
Sbjct: 36  ALKEEGYKVILVNSNPATIMTDTEIADKVYMEPLTFEFVARIIRKERPDAILPTLGGQTG 95

Query: 64  EDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFT 117
            +  VQ     +LE   +    + + A   + D+ + + +++  G PV  S +V+     
Sbjct: 96  LNLAVQLAKAGVLEECGVEILGTKLEAIEKAEDREQFRALMNELGEPVPESAIVHSLEEA 155

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IE 176
            +    I  P +++P       G  +   ++ +   +      +   Q L+E+ + G  E
Sbjct: 156 YEFVQQIGYPVIVRPAFTLGGTGGGICTNEEELIDIVSTGLKMSPVHQCLLERSIAGYKE 215

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAH 235
           +   VM DA+ +   I V   +     +   + +S  V P++ +    Y+ ++  +    
Sbjct: 216 IEYEVMRDANDNA--IVVCNMENID-PVGIHTGDSIVVAPSQTLSDREYQLLRNASLNII 272

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +A+G  G        DP S + + +E+N  P ++  S     +   GY   +L   +
Sbjct: 273 RALGIEGGCNVQLALDPDSFRYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAKI 325


>gi|32267348|ref|NP_861380.1| acetyl-CoA carboxylase subunit A [Helicobacter hepaticus ATCC
           51449]
 gi|32263401|gb|AAP78446.1| conserved hypothetical protein [Helicobacter hepaticus ATCC 51449]
          Length = 474

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 87/222 (39%), Gaps = 20/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-L 112
            +H  +G   E+      ++   I +     L  A   DK  ++ ++   G+P+ P    
Sbjct: 76  AIHPGYGFLSENATFAKKVQEAGITWIGPDALTIAKMGDKNAARAIMEKNGIPIVPGTQP 135

Query: 113 VNRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGD 164
           +N+ ++         I  P ++K   GG   GI V++K++ +         ++ ++   D
Sbjct: 136 LNKHSISDIAKYAQKIGYPVILKASSGGGGRGIRVVEKEEDLIESFEACKREAMAFFKND 195

Query: 165 QLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLD 222
            + +E+Y+ +   +   ++ D   +V  +            K        + P+ +   D
Sbjct: 196 DVFMEKYIVNPRHIEFQILADNYGNVIHLLERDCSIQRRHQKL-----VEIAPSPLISDD 250

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + + +   A  A +A         +FL D  +   +++E+N 
Sbjct: 251 LRRRMGAAAVAAAKAAQYTNAGTVEFLLDE-NNTFYFMEMNT 291


>gi|308173088|ref|YP_003919793.1| arginine-specific carbamoyl-phosphate synthetase large subunit
           [Bacillus amyloliquefaciens DSM 7]
 gi|307605952|emb|CBI42323.1| arginine-specific carbamoyl-phosphate synthetase (large subunit)
           [Bacillus amyloliquefaciens DSM 7]
 gi|328554070|gb|AEB24562.1| carbamoyl phosphate synthase large subunit [Bacillus
           amyloliquefaciens TA208]
 gi|328911149|gb|AEB62745.1| arginine-specific carbamoyl-phosphate synthetase (large subunit)
           [Bacillus amyloliquefaciens LL3]
          Length = 1031

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 85/229 (37%), Gaps = 14/229 (6%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTMDSQHLISPPYV 129
           LE   IP   +         D+    +++    +               +    I  P +
Sbjct: 650 LEKAGIPLLGTSFETLDALEDRDLFYKLLDDLDLKHAKGETAYTKEEAAEKASRIGYPVL 709

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           I+P      +G+I+++ +  I   L   +   +   +LI+QY+ G E+   ++ D     
Sbjct: 710 IRPSYVIGGMGMIIVESEAQISELLENEAGMPY--PILIDQYITGKEVEIDLISDGH--- 764

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
            E+ VP    +       S +S  +LP   +  ++ +E++  A      +  +GI    F
Sbjct: 765 -EVFVPTCTEHIERAGVHSGDSFAILPGPSVTPEMQRELKEAAEKIAVKLAFKGIMNIQF 823

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           + D     +  LE+N +   T     P ++   G     L   ++  AS
Sbjct: 824 VIDEK-GDILVLEVNPRASRT----VPVVSKVMGVPMIPLAARLLAGAS 867



 Score = 65.1 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 47/286 (16%), Positives = 104/286 (36%), Gaps = 33/286 (11%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQIDVD---------------------RSVGLV 45
           G ++E + S   G     AL++ G++V  ++ +                      S+  +
Sbjct: 21  GQAAEFDYS---GTQGCMALKEEGYRVILVNNNPATIMTDEAFADEIYFEPLTPESIEAI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   KPD     L G    +  V      +L+   +    + +       D+ + + ++ 
Sbjct: 78  IEKEKPDGLLANLGGQTALNLAVKLEEAGVLKKHHVKLLGTSVETIQKGEDREQFRALMK 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
               PV  S +V+     +     I  P +++P       G  + K  ++    + Q+  
Sbjct: 138 ELDQPVPESEIVDNEEDALRFAESIGFPVILRPAYTLGGKGGGIAKTKEAFQTLIKQALL 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   Q L+E+ + G  E+   VM D +   T I V   +       ++  +        
Sbjct: 198 ASPISQCLVEKSIAGFKEIEYEVMRDKNH--TCITVCNMENIDPVGVHTGDSIVVAPSQT 255

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +  + Y+ ++  +     A+   G     F  DP S++ + +E+N 
Sbjct: 256 LTDEEYQMLRSASLAIISALDVVGGCNIQFALDPFSKQYYVIEVNP 301


>gi|229524745|ref|ZP_04414150.1| biotin carboxylase of acetyl-CoA carboxylase [Vibrio cholerae bv.
           albensis VL426]
 gi|229338326|gb|EEO03343.1| biotin carboxylase of acetyl-CoA carboxylase [Vibrio cholerae bv.
           albensis VL426]
          Length = 447

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 81/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         L  DK+ +   +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAEQVERSGFIFVGPRAETIRLMGDKVSAINAMKKAGVPCVPGSDG 136

Query: 112 -LVNRFTMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
            L N    +  H   I  P +IK   GG   G+ V++ +  +   +     ++ +  + D
Sbjct: 137 PLDNDEAKNKAHAKRIGYPVIIKASGGGGGRGMRVVRNEAELTKSIQMTRAEAKAAFNND 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E++++    +   V+ D   +   +            K          PA  I  +
Sbjct: 197 MVYMEKFLENPRHVEVQVIADGQGNAIHLGERDCSMQRRHQK-----VVEEAPAPGITEE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + K +      A   IG RG    +FL+   + + +++E+N 
Sbjct: 252 MRKFIGERCTRACIEIGYRGAGTFEFLY--ENGEFYFIEMNT 291


>gi|254361688|ref|ZP_04977825.1| carbamoyl-phosphate synthase (glutamine-hydrolyzing) [Mannheimia
           haemolytica PHL213]
 gi|261491742|ref|ZP_05988322.1| carbamoyl phosphate synthase large subunit [Mannheimia haemolytica
           serotype A2 str. BOVINE]
 gi|261495508|ref|ZP_05991955.1| carbamoyl phosphate synthase large subunit [Mannheimia haemolytica
           serotype A2 str. OVINE]
 gi|153093210|gb|EDN74221.1| carbamoyl-phosphate synthase (glutamine-hydrolyzing) [Mannheimia
           haemolytica PHL213]
 gi|261308842|gb|EEY10098.1| carbamoyl phosphate synthase large subunit [Mannheimia haemolytica
           serotype A2 str. OVINE]
 gi|261312581|gb|EEY13704.1| carbamoyl phosphate synthase large subunit [Mannheimia haemolytica
           serotype A2 str. BOVINE]
          Length = 1068

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 50/278 (17%), Positives = 102/278 (36%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +              DV        ++V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYKVVLVNSNPATIMTDPNMADVTYIEPIEWKTVEKIIEKERPDAILP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      +L+   +    +   A   + D+ R K+ ++  G+    S +
Sbjct: 89  TMGGQTALNCALDLSKNGVLKKYNVELIGATEDAIDKAEDRGRFKEAMTKIGLNTPKSFV 148

Query: 113 VNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            + F   + +Q  +  P +I+P       G  +            +    +   +LLIEQ
Sbjct: 149 CHSFEEALAAQEQVGFPTLIRPSFTMGGSGGGIAYNRDEFIAICERGFEASPTHELLIEQ 208

Query: 171 YVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            V G  E    V+ D + + +   ++   D           +S  V PA+ +    Y+ +
Sbjct: 209 SVLGWKEYEMEVVRDRADNCIIVCSIENFDPMGVHT----GDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RNASLAVLREIGVDTGGSNVQFAINPANGEMIVIEMNP 302



 Score = 56.7 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 27/194 (13%), Positives = 78/194 (40%), Gaps = 10/194 (5%)

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--FTMDSQHLISPPYVIKP 132
             +    +   +   + D+ R +Q++++ G+    +         +   + +  P V++P
Sbjct: 651 AGVNIIGTSADSIDAAEDRERFQQILNTLGLKQPANRTARNALEAVALANEVGYPLVVRP 710

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTE 191
                   + ++  D+ +   + ++ S ++   +L++ ++ + IE+    + D    +  
Sbjct: 711 SYVLGGRAMQIVYNDEELNRYMREAVSVSNDSPILLDHFLNNAIEVDVDCICDGENVLIG 770

Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
             +   +    +    S +S   LPA  +   +  E+++       A+G +G+    F  
Sbjct: 771 GIMQHVE----QAGIHSGDSACSLPAYSLSGHVLDEIRKQTNAMAFALGVKGLMNVQFAV 826

Query: 251 DPLSRKVFWLEINV 264
              +  V+ LE+N 
Sbjct: 827 --QNEVVYVLEVNP 838


>gi|323705536|ref|ZP_08117110.1| carbamoyl-phosphate synthase, large subunit [Thermoanaerobacterium
           xylanolyticum LX-11]
 gi|323535013|gb|EGB24790.1| carbamoyl-phosphate synthase, large subunit [Thermoanaerobacterium
           xylanolyticum LX-11]
          Length = 1073

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 43/286 (15%), Positives = 105/286 (36%), Gaps = 33/286 (11%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQIDVDRS---------------------VGLV 45
           G ++E + S   G     +L++ G KV  ++ + +                     +  +
Sbjct: 21  GQAAEFDYS---GTQACKSLKEEGLKVILVNNNPATIMTDTEIADVVYIENPEVDVLEAI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   +PD     + G  G + +V+     I++   +    + I +   + D+   K+ + 
Sbjct: 78  IDKERPDGILGTIGGQTGLNVVVKLKESGIIDKYNLKVLGTSIESIKTAEDRELFKKKME 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G P+  S  VN     +        P +++P       G  +   +  + + +     
Sbjct: 138 EIGEPIAESATVNNVDDAIKFAEKCGYPLIVRPAFTLGGTGGGIANNEDELKVIVDLGLK 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   ++LIE+ + G  E+   VM D++ +   I     + +     ++  +        
Sbjct: 198 KSMAHEVLIEKSLYGYKEIEYEVMRDSNDNCITIC--NMENFDPVGVHTGDSIVVAPSQT 255

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +    Y+ ++  +    +A+   G     F  DP S + + +E+N 
Sbjct: 256 LTDYEYQMLRTASLKIIKALKIEGGCNVQFALDPNSHQYYVIEVNP 301



 Score = 65.5 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 33/227 (14%), Positives = 81/227 (35%), Gaps = 14/227 (6%)

Query: 69  QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--SILVNRFTMDSQHLISP 126
           Q + +   +    +   +   S D+ +  +++    +        L      D    I  
Sbjct: 645 QGLSDN-GVNILGTSFESIDDSEDREKFSKLLKKLNINQPKGGYALSVGDAKDVALTIGF 703

Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186
           P +++P        +  +   Q I   +  +   + G  +LI++Y++G E+    + D  
Sbjct: 704 PLLVRPSYVIGGQSMEKVNTLQEIIDYVSNAMKVSPGKPVLIDKYIEGREVEVDAISDG- 762

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISR 245
              T++ +P    +       S +S  + PA+ +       +         A+  +G+  
Sbjct: 763 ---TDVLIPGIMEHIERAGVHSGDSFSMYPARNLSDHEISTIVEYTKKISCALKVKGLIN 819

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
             F+       V+ LE+N +   T     P ++   G    ++ + +
Sbjct: 820 IQFVV--KDGVVYVLEVNPRASRT----VPVISKATGVPMIDIAVKI 860


>gi|320537413|ref|ZP_08037363.1| ATP-grasp domain protein [Treponema phagedenis F0421]
 gi|320145739|gb|EFW37405.1| ATP-grasp domain protein [Treponema phagedenis F0421]
          Length = 529

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 41/244 (16%), Positives = 86/244 (35%), Gaps = 24/244 (9%)

Query: 32  KVSQIDVDRSVGLVL------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
           +   ID+  +  L+       A  + D  F            V AI E   +P     + 
Sbjct: 33  EFLPIDLKDTDSLIKYALGLKADSRLDAVFTAATDFSA---SVAAIAEACHLP--GHSLE 87

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI------SPPYVIKPLKGGSSL 139
           A+  + DK R +    + G+       ++    +S   I      S P V+KP+    + 
Sbjct: 88  AALNATDKGRMRSCFKAAGIASPLFAEIHESEKESALAIYTGNGASFPAVVKPVDNMGAR 147

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDF 199
           G  ++   + +   L  +  ++   + ++E+++ G E +   +     +        +D 
Sbjct: 148 GCKLVTCAEELAFALDDALRYSRTRRAVVEEFIQGPEFS---LEGLVFNGKTCITAVADR 204

Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR-GISRSDFLFDPLSRKVF 258
           + +   Y      H +P++       E+  +     +A+G R G  + D        K  
Sbjct: 205 HIFFPPYFIELG-HTIPSQYEKKDTDELIAVFTEGARALGLRHGAIKGDIFLKE--GKAV 261

Query: 259 WLEI 262
             EI
Sbjct: 262 VGEI 265


>gi|315231798|ref|YP_004072234.1| Phosphoribosylglycinamide formyltransferase 2 [Thermococcus
           barophilus MP]
 gi|315184826|gb|ADT85011.1| Phosphoribosylglycinamide formyltransferase 2 [Thermococcus
           barophilus MP]
          Length = 429

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 50/283 (17%), Positives = 98/283 (34%), Gaps = 45/283 (15%)

Query: 19  GKACASALEDAGFKVSQID--------------------VDRSVGLVLAHLKPDLAFNVL 58
           GK  A   +  G +V  +D                        +  ++   KPD     +
Sbjct: 28  GKEIAIEAQRLGVEVIAVDRYPNAPAMQVAHKSYVGNMKDKDFLWSIVEREKPDAIIPEI 87

Query: 59  HGNFGEDGLVQAILELLEIPY-THSGILASALSMDKMRSKQ-VVSSCGVPVCPSILVNRF 116
                    + A+ E  +  Y       A+ ++M + R+++ +     VP          
Sbjct: 88  EAIN-----LDALFEFEKEGYFVVPNARATWIAMHRERTRETLAKEAKVPTSRYRYATTL 142

Query: 117 TM--DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG--DQLLIEQYV 172
               D+   I  P   K +   S  G   +K  + +P    ++     G  D++++E+++
Sbjct: 143 DELYDACEKIGYPCHTKAIMSSSGKGSYFVKGPEDVPKAWEEAKKKARGSADKIIVEEHI 202

Query: 173 D----GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           D      EL    + +    VT    P      Y++K    +S    PA+I     ++V 
Sbjct: 203 DFEVEITELAVRHLDENGKVVTTFPKPVGH---YQIKGDYHSSW--QPAEISEKAERKVY 257

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP---GM 268
            +A      +G  G+   +        KV+  E++ +P   GM
Sbjct: 258 EIAKKITDVLGGLGLFGVEMFV--KGDKVWANEVSPRPHDTGM 298


>gi|220927591|ref|YP_002504500.1| cyanophycin synthetase [Clostridium cellulolyticum H10]
 gi|219997919|gb|ACL74520.1| cyanophycin synthetase [Clostridium cellulolyticum H10]
          Length = 893

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 56/119 (47%), Gaps = 5/119 (4%)

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSS 138
            S  +A  ++ DK  +K+++    VPV   I+V   +   ++  ++  P VIKP+     
Sbjct: 203 GSSCIAVDIASDKQMTKKLLMDNNVPVPCGIVVRTEQEAFEAVEMVGYPLVIKPIDSNQG 262

Query: 139 LGIIV-IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK 196
            G+ V I  +  I      S +  +  ++++E+YV G +    V+GD    V E   P+
Sbjct: 263 KGVTVNISTEDKIRAAY--SEARKYSRKVIVEKYVCGKDYRVLVVGDKVCAVAERRPPR 319


>gi|78185881|ref|YP_378315.1| phosphoribosylglycinamide formyltransferase 2 [Synechococcus sp.
           CC9902]
 gi|78170175|gb|ABB27272.1| phosphoribosylglycinamide formyltransferase 2 [Synechococcus sp.
           CC9902]
          Length = 398

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 38/245 (15%), Positives = 94/245 (38%), Gaps = 26/245 (10%)

Query: 32  KVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSM 91
           +V Q+    ++  V+   +PD+    +     E     A LE   I        A+A +M
Sbjct: 56  EVFQMTDATALKEVVQRHRPDVVIPEIEALAVE---ALAELEQDGITVI-PTARATAFTM 111

Query: 92  DKMRSKQVVSS-CGVPVCPSILVNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVIKKDQ 148
           ++ + + + S   G+        +           +  P V+KP+   S  G  V++  +
Sbjct: 112 NRDQIRDLASGELGLHTARFAYASNAAELKKVAAPLGWPVVVKPVMSSSGKGQSVVQTPE 171

Query: 149 SIPLD--LLQSSSWNHGDQLLIEQYVDGIELTCGVM-----GDASLDVTEIAVPKSDFYS 201
            +        +++    +Q+++E++++  +L   ++        +L    I   + +   
Sbjct: 172 QLDQAWEAAMANARGTSNQVIVEEFLE-FDLEITLLTIRQRNGETLFCPPIG-HEQERGD 229

Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
           Y+  +         PA++     ++ Q +A      +G  G+   +F       +V + E
Sbjct: 230 YQCSW--------QPAQMSDAQLQQAQTMARTVTDNLGGAGLFGVEFFL--CGNEVIFSE 279

Query: 262 INVQP 266
           ++ +P
Sbjct: 280 LSPRP 284


>gi|148227451|ref|NP_001089298.1| propionyl CoA carboxylase, alpha polypeptide [Xenopus laevis]
 gi|59862015|gb|AAH90253.1| Pcca protein [Xenopus laevis]
          Length = 710

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 74/221 (33%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      L    + +      A     DK+ SK +  +  V   P    
Sbjct: 120 AVHPGYGFLSENKEFARRLAAESVTFIGPDTHAIHAMGDKIESKLLAKNAKVNTIPGFDG 179

Query: 112 LVNRFTMDS--QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGD 164
           +V            I  P +IK   GG   G+ +   D+             +SS+   D
Sbjct: 180 VVKDADEAVRIAREIGYPVMIKASAGGGGKGMRIAWDDEETREGFRFSSQEAASSFG-DD 238

Query: 165 QLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           +LLIE+++ D   +   V+ D   +   +   +        K             +  + 
Sbjct: 239 RLLIEKFIDDPRHIEIQVLADKHGNALWLNERECSIQRRNQK----VVEEAPSTFLDPET 294

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +   A    +A+        +FL D   R  ++LE+N 
Sbjct: 295 RRAMGEQAVALAKAVKYSSAGTVEFLVDSK-RNFYFLEMNT 334


>gi|258620657|ref|ZP_05715694.1| acetyl-CoA carboxylase, biotin carboxylase [Vibrio mimicus VM573]
 gi|262163832|ref|ZP_06031572.1| biotin carboxylase of acetyl-CoA carboxylase [Vibrio mimicus VM223]
 gi|262172602|ref|ZP_06040280.1| biotin carboxylase of acetyl-CoA carboxylase [Vibrio mimicus
           MB-451]
 gi|262405019|ref|ZP_06081571.1| biotin carboxylase of acetyl-CoA carboxylase [Vibrio sp. RC586]
 gi|258587172|gb|EEW11884.1| acetyl-CoA carboxylase, biotin carboxylase [Vibrio mimicus VM573]
 gi|261893678|gb|EEY39664.1| biotin carboxylase of acetyl-CoA carboxylase [Vibrio mimicus
           MB-451]
 gi|262027812|gb|EEY46477.1| biotin carboxylase of acetyl-CoA carboxylase [Vibrio mimicus VM223]
 gi|262348858|gb|EEY97999.1| biotin carboxylase of acetyl-CoA carboxylase [Vibrio sp. RC586]
          Length = 447

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 81/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         L  DK+ +   +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAEQVERSGFIFVGPKAETIRLMGDKVSAINAMKKAGVPCVPGSDG 136

Query: 112 -LVNRFTMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
            L N    +  H   I  P +IK   GG   G+ V++ +  +   +     ++ +  + D
Sbjct: 137 PLDNDEAKNKAHAKRIGYPVIIKASGGGGGRGMRVVRNEAELTKSIQMTRAEAKAAFNND 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E++++    +   V+ D   +   +            K          PA  I  +
Sbjct: 197 MVYMEKFLENPRHVEVQVIADGQGNAIHLGERDCSMQRRHQK-----VVEEAPAPGITEE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + K +      A   IG RG    +FL+   + + +++E+N 
Sbjct: 252 LRKFIGERCTRACIEIGYRGAGTFEFLY--ENGEFYFIEMNT 291


>gi|187934720|ref|YP_001884325.1| carbamoyl phosphate synthase large subunit [Clostridium botulinum B
           str. Eklund 17B]
 gi|226700925|sp|B2THH3|CARB_CLOBB RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|187722873|gb|ACD24094.1| carbamoyl-phosphate synthase, large subunit [Clostridium botulinum
           B str. Eklund 17B]
          Length = 1069

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/216 (13%), Positives = 78/216 (36%), Gaps = 12/216 (5%)

Query: 67  LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV--PVCPSILVNRFTMDSQHLI 124
            +   L+   I    +      ++ D+ +  +++    +  P    I      ++    +
Sbjct: 644 KLANFLKEKNIKTLGTTADQIDMAEDREKFDELLERLDISRPKGKGIWSVEEGLEEAERL 703

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
             P +++P       G+ +   ++ +   L  +   +  + +LI++Y+ G E+    + D
Sbjct: 704 GFPVLVRPSYVIGGQGMEITHDEEELIFYLTNAFVKDKKNPILIDKYLMGREIEVDAISD 763

Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244
               +    +   +       +S  + T      +  +I  ++         AIG +G+ 
Sbjct: 764 GENILIPGIMEHLERAGV---HSGDSVTMYPSQNVCDEIKGKILEYTKKLALAIGIKGMI 820

Query: 245 RSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFP 275
              F+       ++ +E+N       P ++ VS  P
Sbjct: 821 NIQFI--EFEGNLYVIEVNPRASRTVPYISKVSKVP 854



 Score = 64.4 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 59/318 (18%), Positives = 118/318 (37%), Gaps = 45/318 (14%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQID-------VDRSVGL--------------V 45
           G ++E + S   G     AL+  G +V  I+        D+ V                V
Sbjct: 21  GQAAEFDYS---GTQACEALKSEGIEVVLINSNPATIMTDKEVADKVYLEPLTLEFIEKV 77

Query: 46  LAHLKPDLAFNVLHGNFGEDG-------LVQAILELLEIPYTHSGILASALSMDKMRSKQ 98
           +   +PD   ++L G  G+ G           ILE  ++    + I +     D+   + 
Sbjct: 78  IVKERPD---SLLAGMGGQTGLNLAVELHDSGILEKYDVKVIGTSIESIKEGEDRELFRD 134

Query: 99  VVSSCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
           +++  G PV  S +V      +D  + I  P +++P       G  +   ++ + + L  
Sbjct: 135 MMNRIGEPVIKSEIVTDLQSGIDFANKIGYPVIVRPAYTLGGSGGGIADDEEELRIILES 194

Query: 157 SSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215
               +   Q+L+E+ V G  E+   VM D            +      +   + +S  V 
Sbjct: 195 GLQLSTIGQVLLEKSVKGWKEIEYEVMRD---SYGNCITVCNMENIDPVGIHTGDSIVVA 251

Query: 216 PAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274
           P++ +    Y+ ++  +     ++G  G     F  +P + +   +EIN  P ++  S  
Sbjct: 252 PSQTLSDKEYQMLRTASINIINSVGIEGGCNVQFSLNPNTFEYAVIEIN--PRVSRSS-- 307

Query: 275 PEMAAYAGYSFRELLLWM 292
              +   GY   +L   +
Sbjct: 308 ALASKATGYPIAKLAAKI 325


>gi|145595030|ref|YP_001159327.1| carbamoyl-phosphate synthase L chain, ATP-binding [Salinispora
           tropica CNB-440]
 gi|145304367|gb|ABP54949.1| acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha /
           biotin carboxylase [Salinispora tropica CNB-440]
          Length = 458

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 76/221 (34%), Gaps = 21/221 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   ED     I     + +        A   DK  ++ ++S  G+P+ P    
Sbjct: 77  AVHPGYGFLSEDADFAEICADNGLVFVGPPPQVVAALADKSSARALMSRAGLPLPPGSIA 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS-----SWNHGD 164
            +            +  P ++K   GG   G+ V+     +P    ++      ++   D
Sbjct: 137 PVPSAADAARVAAEVGYPVIVKAAAGGGGRGMTVVSAPAELPRAYARTRAAAQVAFG-DD 195

Query: 165 QLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
           ++ +EQY+ +   +   V+ DA  +               ++          PA  +   
Sbjct: 196 RVYVEQYLGNARHVEVQVLCDAHGNGV-----HLGTRDCSVQRRHQKLVEEAPAPALSAT 250

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
               V   A      +G  G    +FL DP   +  +LEIN
Sbjct: 251 TLAAVADSALRGALEVGFTGAGTVEFLVDPAE-QFHFLEIN 290


>gi|39945042|ref|XP_362058.1| hypothetical protein MGG_04503 [Magnaporthe oryzae 70-15]
 gi|145011390|gb|EDJ96046.1| hypothetical protein MGG_04503 [Magnaporthe oryzae 70-15]
          Length = 1179

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 55/289 (19%), Positives = 104/289 (35%), Gaps = 37/289 (12%)

Query: 4   LMGGISSEREVSLSSGKACASALEDAGF--------------------KVSQIDVDRSV- 42
           L  G + E + S   G     AL++AG                     +V  + V     
Sbjct: 105 LAIGQAGEFDYS---GSQALKALKEAGIASVLLNPNIATIQTNHSLADEVYYLPVTAEYC 161

Query: 43  GLVLAHLKPDLAFNVLHG----NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQ 98
             V    +PD  F    G    N G +   + ILE   +    + +    LS D+    +
Sbjct: 162 AYVFERERPDGIFLAYGGQTALNLGVELKRKGILEKYGVKVLGTSVQTLELSEDRDLFAR 221

Query: 99  VVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
            +    +P+  SI VN     +D+   +  P +++       LG       + +    + 
Sbjct: 222 ALDEINIPIAKSIAVNSVDEALDAAEKVGYPIIVRAAYALGGLGSGFANNREELKQ--MA 279

Query: 157 SSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215
           + S     Q+L+E+ + G  E+   V+ DA  +   I V   + +   L   + +S  V 
Sbjct: 280 ARSLTLSPQILVEKSLKGWKEVEYEVVRDAENN--CITVCNMENFD-PLGIHTGDSIVVA 336

Query: 216 PAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
           P++ +  + Y  ++  A    + +G  G     +   P       +E+N
Sbjct: 337 PSQTLSDEEYHMLRSAAIKIVRHLGVVGECNVQYALQPDGLDYRVIEVN 385



 Score = 51.7 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/165 (15%), Positives = 63/165 (38%), Gaps = 6/165 (3%)

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYVIKPLKGGSS 138
            +       + D+ +  +++ S GV       +            +S P +++P    S 
Sbjct: 751 GTNPQDIDKAEDRKKFSEILDSIGVDQPEWAELKSVDEARAFADKVSYPVLVRPSYVLSG 810

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD 198
             + VI+  + +   L  ++S +    ++I ++++G      +  D      ++ V    
Sbjct: 811 AAMTVIRSPEELAEKLEAAASVSPEHPVVISKFIEG---AAEIDVDGVAHQGKLLVHAVS 867

Query: 199 FYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRG 242
            +  +    S ++T VLP + +     + V+ +A    +A    G
Sbjct: 868 EHVEQAGVHSGDATLVLPPQKLDEQTMERVKDIAQKVAKAWNITG 912


>gi|282862433|ref|ZP_06271495.1| pyruvate carboxylase [Streptomyces sp. ACTE]
 gi|282562772|gb|EFB68312.1| pyruvate carboxylase [Streptomyces sp. ACTE]
          Length = 1124

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 39/247 (15%), Positives = 78/247 (31%), Gaps = 18/247 (7%)

Query: 28  DAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87
           + G  V        V         D  +   +G   E+  + A      I +        
Sbjct: 53  EPGHPVRAYLSVDEVIKAARKAGADAVYPG-YGFMSENPELAAACSRAGITFVGPPASVL 111

Query: 88  ALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD----SQHLISPPYVIKPLKGGSSLGIIV 143
            L+ +K R+       GVPV  S       +D    +   I  P  +K + GG   G+  
Sbjct: 112 NLTGNKARAVAAAREAGVPVLKS-SEPSDDVDTLVAASEDIGFPVFVKAVAGGGGRGMRR 170

Query: 144 IKKDQSIPLDLLQS-----SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD 198
           + +   +   +  +     S++      L +  ++   +   ++ DA   V  +      
Sbjct: 171 VAEAAQLREAIDAAMREARSAFGDATVFLEQAVINPRHIEVQILADAEGGVVHLYE---- 226

Query: 199 FYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
                ++        + PA  +  ++ + +   A    + I        +FL D     V
Sbjct: 227 -RDCSVQRRHQKVVEIAPAPNLDPELRERICADAVAFARHIDYVNAGTVEFLVDERGNHV 285

Query: 258 FWLEINV 264
           F  E+N 
Sbjct: 286 FI-EMNP 291


>gi|289192033|ref|YP_003457974.1| MGS domain protein [Methanocaldococcus sp. FS406-22]
 gi|288938483|gb|ADC69238.1| MGS domain protein [Methanocaldococcus sp. FS406-22]
          Length = 619

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 43/309 (13%), Positives = 103/309 (33%), Gaps = 40/309 (12%)

Query: 11  EREVSLSSGKACASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGN 61
           E + S  S  A   AL++ G +   I         D D S  L    +  +   N+    
Sbjct: 103 EFDYS--SVHAVL-ALKEMGIEAIIINNNPETVSTDYDTSDKLYFEPITFEDVLNIAE-R 158

Query: 62  FGEDGLVQAI---------------LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP 106
             E G +  +               L+   +    +      ++ D+    +++    +P
Sbjct: 159 EKEKGELLGVIVQFGGQTAINLAMKLKKAGVNILGTTPENINVAEDREEFSKLLKKLNIP 218

Query: 107 VCPS--ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164
                        ++    I  P +++P        + ++  +  +   + ++   +   
Sbjct: 219 QAEGGTAFTKEEALEIAKRIGYPVLVRPSYVLGGRAMQIVYSEDELIEYMEEAVRVSEEH 278

Query: 165 QLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            +LI++++ D +EL    + D    +    +   +       +S  ++T + P  +P +I
Sbjct: 279 PVLIDKFLEDAVELDVDAVCDGESVLIGAIMEHIEEAGV---HSGDSATVIPPQTLPKEI 335

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283
              V        +A+   G+   +  +      V+ LE N +   T     P ++   G 
Sbjct: 336 IDTVIDYTAKLARALNIVGL--LNVQYAVKDGVVYVLEANPRASRT----VPYVSKSVGI 389

Query: 284 SFRELLLWM 292
              +L   +
Sbjct: 390 PLAKLATKI 398


>gi|258623768|ref|ZP_05718726.1| acetyl-CoA carboxylase, biotin carboxylase [Vibrio mimicus VM603]
 gi|258583965|gb|EEW08756.1| acetyl-CoA carboxylase, biotin carboxylase [Vibrio mimicus VM603]
          Length = 447

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 81/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         L  DK+ +   +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAEQVERSGFIFVGPKAETIRLMGDKVSAINAMKKAGVPCVPGSDG 136

Query: 112 -LVNRFTMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
            L N    +  H   I  P +IK   GG   G+ V++ +  +   +     ++ +  + D
Sbjct: 137 PLDNDEAKNKAHAKRIGYPVIIKASGGGGGRGMRVVRNEAELTKSIQMTRAEAKAAFNND 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E++++    +   V+ D   +   +            K          PA  I  +
Sbjct: 197 MVYMEKFLENPRHVEVQVIADGQGNAIHLGERDCSMQRRHQK-----VVEEAPAPGITEE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + K +      A   IG RG    +FL+   + + +++E+N 
Sbjct: 252 LRKFIGERCTRACIEIGYRGAGTFEFLY--ENGEFYFIEMNT 291


>gi|229520985|ref|ZP_04410406.1| biotin carboxylase of acetyl-CoA carboxylase [Vibrio cholerae TM
           11079-80]
 gi|229341870|gb|EEO06871.1| biotin carboxylase of acetyl-CoA carboxylase [Vibrio cholerae TM
           11079-80]
          Length = 447

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 82/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         L  DK+ +   +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAEQVERSGFIFVGPRAETIRLMGDKVSAINAMKKAGVPCVPGSDG 136

Query: 112 -LVNRFTMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
            L N    +  H   I  P +IK   GG   G+ V++ +  +   +     ++ +  + D
Sbjct: 137 PLDNDEAKNKAHAKRIGYPVIIKASGGGGGRGMRVVRNEAELTKSIQMTRAEAKAAFNND 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E++++    +   V+ D   +   +A           K          PA  I  +
Sbjct: 197 MVYMEKFLENPRHVEVQVIADGQGNAIHLAERDCSMQRRHQK-----VVEEAPAPGITEE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + K +      A   IG RG    +FL+   + + +++E+N 
Sbjct: 252 MRKFIGERCTRACIEIGYRGAGTFEFLY--ENGEFYFIEMNT 291


>gi|167749373|ref|ZP_02421500.1| hypothetical protein EUBSIR_00325 [Eubacterium siraeum DSM 15702]
 gi|167657654|gb|EDS01784.1| hypothetical protein EUBSIR_00325 [Eubacterium siraeum DSM 15702]
          Length = 1068

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 50/286 (17%), Positives = 98/286 (34%), Gaps = 33/286 (11%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------------- 49
           G ++E + +   G     AL+  G +V  I+ + +  +   H+                 
Sbjct: 21  GQAAEFDYA---GTQACRALKAEGLEVVLINSNPATIMTDKHMADKIYIEPLTLDVVKKI 77

Query: 50  ----KPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
               KPD   + L G  G    +Q      L    +    +       + D+   K  + 
Sbjct: 78  IKIEKPDSILSTLGGQTGLTLSMQLAEEGFLAENGVKLLGANPETIHKAEDRQAFKDTME 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
           + G P  PS +V      +D   +I  P +++P       G  +      +         
Sbjct: 138 AIGEPCIPSKVVETVEDALDFAEVIHYPVIVRPAFTLGGTGGGIAYSKDELHEIATNGLR 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   Q+L+E+ + G  E+   V+ DA  +V  I V   + +     ++  +        
Sbjct: 198 LSPITQILVEKCISGWKEIEFEVIRDAKGNV--ITVCSMENFDPVGVHTGDSIVIAPAVT 255

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +    Y+ ++  A    QA+   G     F   P S +   +E+N 
Sbjct: 256 LADKEYQMLRTAALNIIQALKVEGGCNCQFALKPDSFEYSVIEVNP 301



 Score = 60.5 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 28/196 (14%), Positives = 76/196 (38%), Gaps = 9/196 (4%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTMDSQHLISPPYV 129
           L+   +    +   +   + D+ +  +++  C +P      V      + + + +  P +
Sbjct: 648 LQESGVRILGTSAESIDDAEDREKFDELLEKCKIPRPKGHTVFTTEEALKAANELGYPVL 707

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           ++P        +I+   D  +   +   ++    + +LI++Y+ G E+    + D     
Sbjct: 708 LRPSYVLGGQNMIIAHCDSDVTEYMTIITATELENPVLIDKYLMGTEVEVDAICDG---- 763

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           T+  +P    +       S +S  V PA+ +   I   +        +A+   G+   + 
Sbjct: 764 TDFLIPGIMEHIERAGVHSGDSISVYPAQTLSDKIKSTIVTYTERLAKALNVIGL--VNI 821

Query: 249 LFDPLSRKVFWLEINV 264
            +   + +V+ +E+N 
Sbjct: 822 QYVVYNNEVYVIEVNP 837


>gi|218779265|ref|YP_002430583.1| hypothetical protein Dalk_1415 [Desulfatibacillum alkenivorans
           AK-01]
 gi|218760649|gb|ACL03115.1| protein of unknown function DUF201 [Desulfatibacillum alkenivorans
           AK-01]
          Length = 415

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 37/213 (17%), Positives = 76/213 (35%), Gaps = 20/213 (9%)

Query: 82  SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI---SPPYVIKPLKGGSS 138
               A+A   +K R+K + ++ G+P  P   +      ++  +   +PP+V+KP+ G  S
Sbjct: 101 PSSQAAANCRNKFRAKTLWAAAGLPT-PGFCLAEGPAQAEAFMAGHNPPWVVKPVDGSGS 159

Query: 139 LGIIVIKKDQSIPLDLLQSSSW--------NHGDQLLIEQYVDGIELTCGVMGDASLDVT 190
             +  +   +     +  + S+             +LIE+   G E +   +        
Sbjct: 160 SLVFKMDSREDWTKAVAAAESFFVRQSKDPQEAWPMLIEEIALGREYSADFLVVGCQARI 219

Query: 191 EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG-ISRSDFL 249
                K    S    +    +  +            ++ L   A +A+G +  I   DF+
Sbjct: 220 LRLTAKHRLTSGH--FGITQAYELRDGLFSPKETAALEGLFAEAARAVGVKACICMVDFI 277

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAG 282
            +      + LE+  +PG       P +   AG
Sbjct: 278 LNE--NGPWLLEMAPRPG---GDCLPLLLRNAG 305


>gi|291556260|emb|CBL33377.1| carbamoyl-phosphate synthase large subunit [Eubacterium siraeum
           V10Sc8a]
          Length = 1068

 Score = 70.5 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 50/286 (17%), Positives = 98/286 (34%), Gaps = 33/286 (11%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------------- 49
           G ++E + +   G     AL+  G +V  I+ + +  +   H+                 
Sbjct: 21  GQAAEFDYA---GTQACRALKAEGLEVVLINSNPATIMTDKHMADKIYIEPLTLDVVKKI 77

Query: 50  ----KPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
               KPD   + L G  G    +Q      L    +    +       + D+   K  + 
Sbjct: 78  IKIEKPDSILSTLGGQTGLTLSMQLAEEGFLAENGVKLLGANPETIHKAEDRQAFKDTME 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
           + G P  PS +V      +D   +I  P +++P       G  +      +         
Sbjct: 138 AIGEPCIPSKVVETVEDALDFAEVIHYPVIVRPAFTLGGTGGGIAYSKDELHEIATNGLR 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   Q+L+E+ + G  E+   V+ DA  +V  I V   + +     ++  +        
Sbjct: 198 LSPITQILVEKCISGWKEIEFEVIRDAKGNV--ITVCSMENFDPVGVHTGDSIVIAPAVT 255

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +    Y+ ++  A    QA+   G     F   P S +   +E+N 
Sbjct: 256 LADKEYQMLRTAALNIIQALKVEGGCNCQFALKPDSFEYSVIEVNP 301



 Score = 60.1 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 28/196 (14%), Positives = 76/196 (38%), Gaps = 9/196 (4%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTMDSQHLISPPYV 129
           L+   +    +   +   + D+ +  +++  C +P      V      + + + +  P +
Sbjct: 648 LQESGVRILGTSAESIDDAEDREKFDELLEKCKIPRPKGHTVFTTEEALKAANELGYPVL 707

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           ++P        +I+   D  +   +   ++    + +LI++Y+ G E+    + D     
Sbjct: 708 LRPSYVLGGQNMIIAHCDSDVTEYMTIITATELENPVLIDKYLMGTEVEVDAICDG---- 763

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           T+  +P    +       S +S  V PA+ +   I   +        +A+   G+   + 
Sbjct: 764 TDFLIPGIMEHIERAGVHSGDSISVYPAQTLSDKIKSTIVTYTERLAKALNVIGL--VNI 821

Query: 249 LFDPLSRKVFWLEINV 264
            +   + +V+ +E+N 
Sbjct: 822 QYVVYNNEVYVIEVNP 837


>gi|310796196|gb|EFQ31657.1| urea carboxylase [Glomerella graminicola M1.001]
          Length = 1823

 Score = 70.5 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 26/147 (17%), Positives = 59/147 (40%), Gaps = 11/147 (7%)

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQLLIEQYVD-GIELT 178
           I  P ++K   GG  +G+       S+          + +      + +E +++    + 
Sbjct: 767 IQYPVMLKSTAGGGGIGLERCNDSASLVEAFDSVQRLAQANFGDAGVFVEHFIENARHIE 826

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQA 237
             V+GD   +VT      +      L+  +       PA  +P D+   +++ A     A
Sbjct: 827 VQVIGDGCGNVT-----SAGERDCSLQRRNQKVIEESPATFVPPDVRSRMRQAAVDLASA 881

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINV 264
           +  R +   +F++D  + + ++LE+N 
Sbjct: 882 VKYRNVGTVEFIYDVDTSEFYFLEVNT 908


>gi|310827198|ref|YP_003959555.1| hypothetical protein ELI_1606 [Eubacterium limosum KIST612]
 gi|308738932|gb|ADO36592.1| hypothetical protein ELI_1606 [Eubacterium limosum KIST612]
          Length = 454

 Score = 70.5 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 37/219 (16%), Positives = 78/219 (35%), Gaps = 16/219 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---S 110
            +H  FG   E+     ++E   + +         +  +K R+K+ +   GVPV P    
Sbjct: 77  AIHPGFGFLSENPAFARLVEQCGLIFIGPDADVIEMMGNKARAKETMIEAGVPVIPGSRG 136

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQL 166
           ++           I  P +IK   GG   G+ + + ++        + +        D +
Sbjct: 137 VVELDEAFQVARDIGFPVLIKARSGGGGRGMRIAESEEDFIDAYTTARAEARTAFGDDGV 196

Query: 167 LIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
            +E+ V     +   ++ D   +V  +            K             +P  I +
Sbjct: 197 YVEKVVQSAKHIEVQLLADHYGNVLHLFERDCSLQRRNQKI----VEEAPCCCLPEKIRE 252

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +   A  A + +G   +   +FL+D   R  +++E+N 
Sbjct: 253 AMTADAVKASRYVGYNSVGTIEFLWDGAER-YYFMEMNT 290


>gi|299537756|ref|ZP_07051045.1| acetyl-CoA carboxylase biotin carboxylase subunit [Lysinibacillus
           fusiformis ZC1]
 gi|298726735|gb|EFI67321.1| acetyl-CoA carboxylase biotin carboxylase subunit [Lysinibacillus
           fusiformis ZC1]
          Length = 455

 Score = 70.5 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 37/218 (16%), Positives = 82/218 (37%), Gaps = 15/218 (6%)

Query: 58  LHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS---I 111
           +H  +G   E+       E   I +      +  +   K  ++  + + GVP+ P    +
Sbjct: 77  IHPGYGFVSENADFAEACENAGIKFIGPSSDSIKIMGIKDVARTTMEAAGVPLVPGTGIV 136

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQLL 167
                  +    I  P +IK   GG   GI V + ++ +   +     ++++      + 
Sbjct: 137 PDIETGKEWAAKIGYPVIIKATAGGGGKGIRVARTEEDLVKGIEITQKEAAAAFGNPGVY 196

Query: 168 IEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE 226
           +E++++        V+ D   +V  +        + + +   L      PA +  +   E
Sbjct: 197 LEKFIEYFRHCEIQVLADGYGNVVHLGERD---CTVQRRMQKLVEEAPSPA-LSSERRAE 252

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +   A  A QA    G    +F++D    K +++E+N 
Sbjct: 253 MGAAAVKAAQACNYEGAGTIEFIYDYQEDKFYFMEMNT 290


>gi|161504813|ref|YP_001571925.1| carbamoyl phosphate synthase large subunit [Salmonella enterica
           subsp. arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160866160|gb|ABX22783.1| hypothetical protein SARI_02937 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 1074

 Score = 70.5 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 42/278 (15%), Positives = 98/278 (35%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D +              V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +    Q +L+   +    +   A   + D+ R    +   G+    S +
Sbjct: 89  TMGGQTALNCALELERQGVLKAFGVTMIGATADAIDKAEDRRRFDIAMKKIGLETARSGI 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     +     +  P +I+P       G  +    +       +    +  ++LLI++
Sbjct: 149 AHTMEEALAVAADVGYPCIIRPSFTMGGTGGGIAYNREEFEEICARGLDLSPTNELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + +   +   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIEN----FDAMGIHTGDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RNASMAVLREIGVETGGSNVQFAVNPKNGRLIVIEMNP 302



 Score = 59.4 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 29/197 (14%), Positives = 73/197 (37%), Gaps = 10/197 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           LE   +P   +   A   + D+ R +  V    +    +  V      ++    I  P V
Sbjct: 654 LEDAGVPVIGTSPDAIDRAEDRERFQHAVDRLKLKQPANATVTAIEQAVEKAKEIGYPLV 713

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  +  +      + S ++   +L++ ++ D +E+    + D  + 
Sbjct: 714 VRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDDAVEVDVDAICDGEMV 773

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           +    +   +    +    S +S   LPA  +  +I   +++        +  RG+    
Sbjct: 774 LIGGIMEHIE----QAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRGLMNVQ 829

Query: 248 FLFDPLSRKVFWLEINV 264
           F       +V+ +E+N 
Sbjct: 830 FAV--KDNEVYLIEVNP 844


>gi|15640323|ref|NP_229950.1| acetyl-CoA carboxylase biotin carboxylase subunit [Vibrio cholerae
           O1 biovar El Tor str. N16961]
 gi|147673889|ref|YP_001218566.1| acetyl-CoA carboxylase biotin carboxylase subunit [Vibrio cholerae
           O395]
 gi|153822830|ref|ZP_01975497.1| acetyl-CoA carboxylase, biotin carboxylase [Vibrio cholerae B33]
 gi|153827375|ref|ZP_01980042.1| acetyl-CoA carboxylase, biotin carboxylase [Vibrio cholerae MZO-2]
 gi|227080509|ref|YP_002809060.1| acetyl-CoA carboxylase, biotin carboxylase [Vibrio cholerae M66-2]
 gi|229506907|ref|ZP_04396415.1| biotin carboxylase of acetyl-CoA carboxylase [Vibrio cholerae BX
           330286]
 gi|229509280|ref|ZP_04398763.1| biotin carboxylase of acetyl-CoA carboxylase [Vibrio cholerae B33]
 gi|229512696|ref|ZP_04402164.1| biotin carboxylase of acetyl-CoA carboxylase [Vibrio cholerae TMA
           21]
 gi|229516224|ref|ZP_04405672.1| biotin carboxylase of acetyl-CoA carboxylase [Vibrio cholerae RC9]
 gi|229527209|ref|ZP_04416602.1| biotin carboxylase of acetyl-CoA carboxylase [Vibrio cholerae
           12129(1)]
 gi|229606420|ref|YP_002877068.1| acetyl-CoA carboxylase biotin carboxylase subunit [Vibrio cholerae
           MJ-1236]
 gi|254286233|ref|ZP_04961192.1| acetyl-CoA carboxylase, biotin carboxylase [Vibrio cholerae
           AM-19226]
 gi|254851430|ref|ZP_05240780.1| acetyl-CoA carboxylase biotin carboxylase subunit [Vibrio cholerae
           MO10]
 gi|262161986|ref|ZP_06031003.1| biotin carboxylase of acetyl-CoA carboxylase [Vibrio cholerae INDRE
           91/1]
 gi|262167983|ref|ZP_06035682.1| biotin carboxylase of acetyl-CoA carboxylase [Vibrio cholerae RC27]
 gi|262192557|ref|ZP_06050707.1| biotin carboxylase of acetyl-CoA carboxylase [Vibrio cholerae CT
           5369-93]
 gi|297581757|ref|ZP_06943679.1| acetyl-CoA carboxylase biotin carboxylase subunit [Vibrio cholerae
           RC385]
 gi|298500927|ref|ZP_07010729.1| acetyl-CoA carboxylase, biotin carboxylase [Vibrio cholerae MAK
           757]
 gi|9654706|gb|AAF93469.1| acetyl-CoA carboxylase, biotin carboxylase [Vibrio cholerae O1
           biovar El Tor str. N16961]
 gi|126519648|gb|EAZ76871.1| acetyl-CoA carboxylase, biotin carboxylase [Vibrio cholerae B33]
 gi|146315772|gb|ABQ20311.1| acetyl-CoA carboxylase, biotin carboxylase [Vibrio cholerae O395]
 gi|149738705|gb|EDM53047.1| acetyl-CoA carboxylase, biotin carboxylase [Vibrio cholerae MZO-2]
 gi|150423648|gb|EDN15590.1| acetyl-CoA carboxylase, biotin carboxylase [Vibrio cholerae
           AM-19226]
 gi|227008397|gb|ACP04609.1| acetyl-CoA carboxylase, biotin carboxylase [Vibrio cholerae M66-2]
 gi|227012154|gb|ACP08364.1| acetyl-CoA carboxylase, biotin carboxylase [Vibrio cholerae O395]
 gi|229335217|gb|EEO00701.1| biotin carboxylase of acetyl-CoA carboxylase [Vibrio cholerae
           12129(1)]
 gi|229346650|gb|EEO11620.1| biotin carboxylase of acetyl-CoA carboxylase [Vibrio cholerae RC9]
 gi|229350206|gb|EEO15158.1| biotin carboxylase of acetyl-CoA carboxylase [Vibrio cholerae TMA
           21]
 gi|229353595|gb|EEO18532.1| biotin carboxylase of acetyl-CoA carboxylase [Vibrio cholerae B33]
 gi|229356012|gb|EEO20931.1| biotin carboxylase of acetyl-CoA carboxylase [Vibrio cholerae BX
           330286]
 gi|229369075|gb|ACQ59498.1| biotin carboxylase of acetyl-CoA carboxylase [Vibrio cholerae
           MJ-1236]
 gi|254847135|gb|EET25549.1| acetyl-CoA carboxylase biotin carboxylase subunit [Vibrio cholerae
           MO10]
 gi|262023516|gb|EEY42218.1| biotin carboxylase of acetyl-CoA carboxylase [Vibrio cholerae RC27]
 gi|262028364|gb|EEY47020.1| biotin carboxylase of acetyl-CoA carboxylase [Vibrio cholerae INDRE
           91/1]
 gi|262031602|gb|EEY50190.1| biotin carboxylase of acetyl-CoA carboxylase [Vibrio cholerae CT
           5369-93]
 gi|297534164|gb|EFH73003.1| acetyl-CoA carboxylase biotin carboxylase subunit [Vibrio cholerae
           RC385]
 gi|297540431|gb|EFH76490.1| acetyl-CoA carboxylase, biotin carboxylase [Vibrio cholerae MAK
           757]
          Length = 447

 Score = 70.5 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 82/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         L  DK+ +   +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAEQVERSGFIFVGPRAETIRLMGDKVSAINAMKKAGVPCVPGSDG 136

Query: 112 -LVNRFTMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
            L N    +  H   I  P +IK   GG   G+ V++ +  +   +     ++ +  + D
Sbjct: 137 PLDNDEAKNKAHAKRIGYPVIIKASGGGGGRGMRVVRNEAELTKSIQMTRAEAKAAFNND 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E++++    +   V+ D   +   +A           K          PA  I  +
Sbjct: 197 MVYMEKFLENPRHVEVQVIADGQGNAIHLAERDCSMQRRHQK-----VVEEAPAPGITEE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + K +      A   IG RG    +FL+   + + +++E+N 
Sbjct: 252 MRKFIGERCTRACIEIGYRGAGTFEFLY--ENGEFYFIEMNT 291


>gi|226329364|ref|ZP_03804882.1| hypothetical protein PROPEN_03269 [Proteus penneri ATCC 35198]
 gi|225202550|gb|EEG84904.1| hypothetical protein PROPEN_03269 [Proteus penneri ATCC 35198]
          Length = 449

 Score = 70.5 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 81/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         L  DK+ + + +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAEQVERSGFIFVGPKAETIRLMGDKVSAIEAMKKAGVPCVPGSDG 136

Query: 112 ---LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
                    ++    I  P +IK   GG   G+ V++ ++ +   +     ++ +    D
Sbjct: 137 PLGNDTAKNIEIAKRIGYPVIIKASGGGGGRGMRVVRSEKELEQSITMTRAEAKAAFSND 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+Y++    +   VM D   +   +A           K          PA  I  +
Sbjct: 197 MVYMEKYLENPRHVEIQVMADGQGNAIYLAERDCSMQRRHQK-----VVEEAPAPGITPE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           I K +      A   IG RG    +FL+   + + +++E+N 
Sbjct: 252 IRKNIGERCANACIEIGYRGAGTFEFLY--ENGEFYFIEMNT 291


>gi|149002646|ref|ZP_01827578.1| carbamoyl phosphate synthase large subunit [Streptococcus
           pneumoniae SP14-BS69]
 gi|147759257|gb|EDK66250.1| carbamoyl phosphate synthase large subunit [Streptococcus
           pneumoniae SP14-BS69]
          Length = 714

 Score = 70.5 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 25/228 (10%), Positives = 76/228 (33%), Gaps = 19/228 (8%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--QHLISPPYV 129
           L    +    + +     + D+   +Q +    +   P          +     I  P +
Sbjct: 302 LAKAGVTILGTQVADLDRAEDRDLFEQALKELDISQPPGQTATNEEEAALAARKIGFPVL 361

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS--- 186
           ++P        + +++ ++ +   +  +   +    +L++ Y+ G E     + D     
Sbjct: 362 VRPSYVLGGRAMEIVENEEDLRSYMRTAVKASPDHPVLVDSYIVGQECEVDAISDGKNVL 421

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISR 245
           +      + ++  +S        +S  V P + +   + + +          + C G+  
Sbjct: 422 IPGIMEHIERAGVHS-------GDSMAVYPPQTLSQKVQETIADYTKRLAIGLHCLGMMN 474

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
             F+      KV+ +E+N +   T     P ++        ++   ++
Sbjct: 475 IQFVI--KDEKVYVIEVNPRASRT----VPFLSKVTNIPMAQVATKLI 516


>gi|154253229|ref|YP_001414053.1| carbamoyl-phosphate synthase L chain ATP-binding [Parvibaculum
           lavamentivorans DS-1]
 gi|154157179|gb|ABS64396.1| Carbamoyl-phosphate synthase L chain ATP-binding [Parvibaculum
           lavamentivorans DS-1]
          Length = 673

 Score = 70.5 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 81/226 (35%), Gaps = 24/226 (10%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       E   + +      A      K  +K ++    VP+ P    
Sbjct: 77  AVHPGYGFLSENAGFAEACEKAGLIFVGPPASAIRAMGLKDAAKALMEKADVPIVPGYHG 136

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS-----SSWNHGD 164
           +    D        I  P +IK + GG   G+  +    S   +L  +     S++   +
Sbjct: 137 DNQDADFLGEQAEKIGYPVLIKAVAGGGGKGMRRVDDPASFAKELKSAQREAGSAFG-DE 195

Query: 165 QLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
           ++L+E+YV     +   V  D+      +           L+          PA  +P +
Sbjct: 196 RVLVEKYVARPRHIEIQVFADSHGQAVSLHE-----RDCSLQRRHQKVIEEAPAPGMPPE 250

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR----KVFWLEINV 264
           + K +   A  A +AIG RG    +F+ D          +++E+N 
Sbjct: 251 MRKAMGEAAVAAAKAIGYRGAGTVEFIADASDGLKPDGFWFMEMNT 296


>gi|268537276|ref|XP_002633774.1| Hypothetical protein CBG03464 [Caenorhabditis briggsae]
          Length = 671

 Score = 70.5 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 77/221 (34%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H  +G   E+           + +      A      K  SKQ++    VPV      
Sbjct: 94  AIHPGYGFLSENAGFAERCAQAGLVFIGPPAQAIRDMGAKNVSKQIMEDAKVPVVKGFHG 153

Query: 113 ---VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
               +         I  P ++K + GG   G+ +   ++     L  + +        D+
Sbjct: 154 EDQSDANLKKKSQEIGYPVMLKAVYGGGGKGMRIAWNEEEFDEKLASARNEAKKSFGNDE 213

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDI 223
           +L+E++V+    +   V GD   +   +           ++          PA  +  + 
Sbjct: 214 MLVEKFVERPRHVEVQVFGDHHGNYVHLWE-----RDCSVQRRHQKIIEEAPAPNMTHEN 268

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             ++   A  A  A+G  G    +F+ DP   + +++E+N 
Sbjct: 269 RLKLGESAVRAAAAVGYVGAGTVEFIMDPR-GEFYFMEMNT 308


>gi|327483166|gb|AEA77573.1| Biotin carboxylase of acetyl-CoA carboxylase [Vibrio cholerae
           LMA3894-4]
          Length = 447

 Score = 70.5 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 82/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         L  DK+ +   +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAEQVERSGFIFVGPRAETIRLMGDKVSAINAMKKAGVPCVPGSDG 136

Query: 112 -LVNRFTMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
            L N    +  H   I  P +IK   GG   G+ V++ +  +   +     ++ +  + D
Sbjct: 137 PLDNDEAKNKAHAKRIGYPVIIKASGGGGGRGMRVVRNEAELTKSIQMTRAEAKAAFNND 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E++++    +   V+ D   +   +A           K          PA  I  +
Sbjct: 197 MVYMEKFLENPRHVEVQVIADGQGNAIHLAERDCSMQRRHQK-----VVEEAPAPGITEE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + K +      A   IG RG    +FL+   + + +++E+N 
Sbjct: 252 MRKFIGERCTRACIEIGYRGAGTFEFLY--ENGEFYFIEMNT 291


>gi|317405244|gb|EFV85580.1| urea amidolyase subunit 2 [Achromobacter xylosoxidans C54]
          Length = 1211

 Score = 70.5 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 34/198 (17%), Positives = 68/198 (34%), Gaps = 14/198 (7%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF---TMDSQHLISPPYVIKP 132
            I +     L       K RS+++ +  GVP+ P   +       +     I  P ++K 
Sbjct: 99  GIAFVGPTPLQIREFGLKHRSRELAAEAGVPMTPGTGLLASLGEALTQAERIGYPVMLKS 158

Query: 133 LKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQLLIEQYVD-GIELTCGVMGDASL 187
             GG  +G+     +  + +           +       IE+YVD    +   + GD + 
Sbjct: 159 TAGGGGIGLSRCDNEAELTVAFDSVQRMGEHFFRDGGAFIERYVDNARHVEVQIFGDGAG 218

Query: 188 DVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRS 246
                 V         ++  +       PA  +P      +   A    +++  R     
Sbjct: 219 -----RVLALGERDCSVQRRNQKVIEETPAPHLPAATRAALLAAAVKLGESVAYRSAGTV 273

Query: 247 DFLFDPLSRKVFWLEINV 264
           +F++DP     ++LE+N 
Sbjct: 274 EFIYDPARDSFYFLEVNT 291


>gi|296119019|ref|ZP_06837592.1| phosphoribosylglycinamide formyltransferase 2 [Corynebacterium
           ammoniagenes DSM 20306]
 gi|295968117|gb|EFG81369.1| phosphoribosylglycinamide formyltransferase 2 [Corynebacterium
           ammoniagenes DSM 20306]
          Length = 415

 Score = 70.5 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 44/266 (16%), Positives = 94/266 (35%), Gaps = 33/266 (12%)

Query: 19  GKACASALEDAGFKVSQ--------------------IDVDRSVGLVLAHLKPDLAFNVL 58
            K    A ++ G +V                      ID +++V  ++ HLKP      +
Sbjct: 8   AKGLVGAFQNLGLEVHVVDRYEGSPAQQVAHFSYTADIDNEKAVLDLVEHLKPQYVVPEI 67

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT- 117
            G   E   + A+ +            A  L+ D+ + ++V  S G+P     +V  F  
Sbjct: 68  EGVAVE--ALHALHDDSSTTVV-PTARACELTSDRKKLREVAESLGLPTTAYKVVENFAD 124

Query: 118 -MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
              +   +  P ++KP    S  G +++K    +               ++ E++VD  +
Sbjct: 125 LEAAVEELGLPCIVKPDVATSGRGHVLVKDHDQLKDAWDNVRRGKKNSWVVAERFVD-FD 183

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHV---LPAKIPLDIYKEVQRLAFL 233
               +M   S+D     +  + ++S  + Y       V    P ++    ++  + +A  
Sbjct: 184 YEVIIMAVRSIDPETGKL--ATWFSEPIGYEHAQGNLVDCWQPKRMSQRAFENARSVAAR 241

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFW 259
               +G RGI   +         +++
Sbjct: 242 ISNELGGRGIFAVELFV--AGDDIYF 265


>gi|256826651|ref|YP_003150610.1| biotin carboxylase /acetyl-coenzyme A carboxylase carboxyl
           transferase subunit alpha [Cryptobacterium curtum DSM
           15641]
 gi|256582794|gb|ACU93928.1| biotin carboxylase /acetyl-coenzyme A carboxylase carboxyl
           transferase subunit alpha [Cryptobacterium curtum DSM
           15641]
          Length = 449

 Score = 70.5 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 74/221 (33%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+     +     + +            +K  +++ +   GVPV P    
Sbjct: 77  AIHPGYGFLSENSTFAKLCRENGLVFIGPSPEVIDRMGNKSAARRTMMKAGVPVVPGTKR 136

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS-----SWNHGD 164
                D    +   I  P +IK   GG   G+ V + +         +      ++    
Sbjct: 137 ALHEADEALAAARDIGWPIMIKASSGGGGKGMRVSESEDDFAEMFAIAQRESVNAFGDNS 196

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
             L    V+   +   ++ D+  +V              ++ S        P+  I  D+
Sbjct: 197 MYLERAIVNPRHIEVQIIADSHGNVI-----SLGDRDCSVQRSHQKMIEESPSPFIDNDV 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +   A  A QA+G       +FL D   R  +++E+N 
Sbjct: 252 RQHLFDDAVRAAQAVGYVNAGTIEFLVDE-DRNYYFMEMNT 291


>gi|225626566|ref|ZP_03784605.1| acetyl-CoA carboxylase alpha chain / propionyl-CoA carboxylase
           alpha chain [Brucella ceti str. Cudo]
 gi|225618223|gb|EEH15266.1| acetyl-CoA carboxylase alpha chain / propionyl-CoA carboxylase
           alpha chain [Brucella ceti str. Cudo]
          Length = 679

 Score = 70.5 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 39/225 (17%), Positives = 73/225 (32%), Gaps = 22/225 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      +E   + +      A      K  +K ++   GVPV P    
Sbjct: 100 AIHPGYGFLSENPAFVDAVEEAGLIFIGPSAKAIRAMGLKDAAKALMEKAGVPVVPGYHG 159

Query: 114 NRFT----MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
           +             I+ P +IK   GG   G+  +         L     ++ +      
Sbjct: 160 DNQDGAFLKSEADRITYPVLIKARAGGGGKGMRRVDSAADFAAALESARREAEASFGDGA 219

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           +L+E+Y+     +   V GD   +               L+          PA  +  ++
Sbjct: 220 VLVEKYMAKPRHIEVQVFGDNHGNAV-----HLFERDCSLQRRHQKVIEEAPAPGMTEEM 274

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR----KVFWLEINV 264
              +   A  A   IG  G    +F+ D        + F++E+N 
Sbjct: 275 RAAMGEAAVKAALTIGYSGAGTVEFIADVSEGLRPDRFFFMEMNT 319


>gi|194290927|ref|YP_002006834.1| acetyl/propionyl-CoA/pyruvate/biotin carboxylase, alpha subunit
           [Cupriavidus taiwanensis LMG 19424]
 gi|193224762|emb|CAQ70773.1| Acetyl/propionyl-CoA/pyruvate/biotin carboxylase, alpha subunit
           [Cupriavidus taiwanensis LMG 19424]
          Length = 495

 Score = 70.5 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 41/223 (18%), Positives = 76/223 (34%), Gaps = 21/223 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  FG   E+      L+   I +   G  A     DK+R+K++    GV   P    
Sbjct: 79  AVHPGFGFLSENAAFARALDAAGIRFIGPGADAIDAMGDKIRAKRIAQQAGVNTIPGYDG 138

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS-------SWNH 162
            I       D    I  P ++K   GG   G+ VI+                    ++  
Sbjct: 139 EIRSAGHAFDVASAIGFPVILKASAGGGGKGMRVIRDADPEACRAAFERTTSEAQGAFG- 197

Query: 163 GDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL 221
             ++ +E+Y++    +   V+GD   +V  +   +        K             +  
Sbjct: 198 DARVFLEKYIERPRHIEIQVLGDRYGNVVHLGERECSIQRRHQK----VIEEAPSPFVDA 253

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + + +   A    Q +G       +F+ DP     ++LE+N 
Sbjct: 254 ALREAMGAQAVALAQQVGYASAGTVEFVVDPS-GAFYFLEMNT 295


>gi|118444928|ref|YP_878874.1| carbamoyl phosphate synthase large subunit [Clostridium novyi NT]
 gi|118135384|gb|ABK62428.1| carbamoyl-phosphate synthase, large subunit [Clostridium novyi NT]
          Length = 1063

 Score = 70.5 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 40/265 (15%), Positives = 98/265 (36%), Gaps = 34/265 (12%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ------ 69
           A+ +AG++   +         D D S  L    L  D   NV+     +  ++Q      
Sbjct: 580 AINNAGYESIMVNNNPETVSTDFDTSDKLYFESLFIDDVMNVVRKENPKGVILQFGGQTS 639

Query: 70  -AILELL---EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ--HL 123
             + E L    +    +   +  L+ D+ + ++++    +       V       +    
Sbjct: 640 VNLAEKLSQRGVNILGTKFESIDLAEDREKFRELLEELNIKTPTGNAVTSIEEAYKVVEN 699

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           +  P +++P        + VI  D+++   + ++ S +    +++++YV G E+    + 
Sbjct: 700 LGYPVIVRPSYVIGGRAMEVIYDDKALEKYMKEAVSLSSEHTIIVDKYVRGTEIEVDAIC 759

Query: 184 DAS---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIG 239
           D     +      + ++  +S        +S  V P   +  D  K++         A+ 
Sbjct: 760 DGEDILMPGIMEHIERTGVHS-------GDSITVYPYMTLSEDTVKKLVENTKKIATALN 812

Query: 240 CRGISRSDFLFDPLSRKVFWLEINV 264
             G+    ++FD     ++ +E+N 
Sbjct: 813 IVGLVNIQYVFDGKD--IYVIEVNP 835



 Score = 48.2 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 42/242 (17%), Positives = 86/242 (35%), Gaps = 16/242 (6%)

Query: 70  AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTMDSQHLISPP 127
            +LE   +        +   + D+   K+++   G P+  S +                P
Sbjct: 106 GVLEKNNVKLLGINGESIKKAEDREEFKELMLEIGEPIPESTIAVNMEECKAFVERHGLP 165

Query: 128 YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDAS 186
            +I+P       G  + +  +            +   Q+L+EQ V G  EL   V+ D  
Sbjct: 166 IIIRPAYTLGGTGGGIAETMEQYLDICELGLKMSPIHQILLEQSVAGWKELEYEVIRDKK 225

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISR 245
            +   I   ++      +   + +S  V P++ +    ++ ++  A    +++   G   
Sbjct: 226 DNCIIICNMEN---IDPVGVHTGDSIVVAPSQTLTDKEHQMLRNSALKIIRSLKIEGGCN 282

Query: 246 SDFLFDPLSRKVFWLEINV-------QPGMTPVSIFPEMAA--YAGYSFRELLLWMVEDA 296
             F  DP+S K   +E+N                   ++A+    GYS  EL  ++ E +
Sbjct: 283 IQFALDPISNKYIVIEVNPRVSRSSALASKAAGYPIAKIASKIAIGYSLDELKNYVTETS 342

Query: 297 SC 298
           S 
Sbjct: 343 SA 344


>gi|322799637|gb|EFZ20909.1| hypothetical protein SINV_13812 [Solenopsis invicta]
          Length = 1141

 Score = 70.5 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 32/220 (14%), Positives = 79/220 (35%), Gaps = 19/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E       +    I +            DK+ ++Q     GVP+ P    
Sbjct: 57  AIHPGYGFLSERADFAQAITNAGIRFIGPSPKVVQQMGDKVAARQAAIQAGVPIVPGTDG 116

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL----DLLQSSSWNHGDQ 165
            +  +   M+       P + K   GG   G+ V+++ + +         ++++      
Sbjct: 117 PVTSSDEAMEFCMKHGLPVIFKAAYGGGGRGMRVVRQMEEVREMFDRASSEAAAAFGNGA 176

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           + IE++++    +   ++GD + +V              ++        + PA  +   +
Sbjct: 177 MFIEKFIERPRHIEVQLLGDHAGNVV-----HLFERDCSVQRRHQKVVEIAPAPALSPKV 231

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            +++   A    + +G       +FL D      +++E+N
Sbjct: 232 REKMTDYAVKLAKHVGYSNAGTVEFLVDESGN-FYFIEVN 270


>gi|257456523|ref|ZP_05621719.1| biotin carboxylase [Treponema vincentii ATCC 35580]
 gi|257446183|gb|EEV21230.1| biotin carboxylase [Treponema vincentii ATCC 35580]
          Length = 440

 Score = 70.5 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 38/224 (16%), Positives = 81/224 (36%), Gaps = 18/224 (8%)

Query: 50  KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109
             D     + G   E+      +E   + +         +  DK+R+++     G+P+ P
Sbjct: 74  GCDAVHPGV-GFLSENADFAREVEKSRMFWIGPKPDTIEMLGDKVRARETAQKSGLPITP 132

Query: 110 S----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH--- 162
                I       ++      P +IK   GG   G+ +I K+  +  +L  +SS      
Sbjct: 133 GSKGAITTKEQAAETAKECGYPVIIKAASGGGGKGMRIIWKEADLAENLAIASSEAEANF 192

Query: 163 -GDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-I 219
               + IE+Y+ D   +   V+GD +  V  +           ++ +        P++ +
Sbjct: 193 ADGTVYIEKYLSDPRHVELQVIGDGAGGVAILGE-----RDCSVQRNHQKLIEESPSQAV 247

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
              +Y  +   A      +   G    +FL      + +++E+N
Sbjct: 248 SDAMYDAMCAGAKKLFSTLKYCGAGTIEFLV--SGDQFYFMEVN 289


>gi|148977180|ref|ZP_01813807.1| acetyl-CoA carboxylase subunit A [Vibrionales bacterium SWAT-3]
 gi|145963462|gb|EDK28725.1| acetyl-CoA carboxylase subunit A [Vibrionales bacterium SWAT-3]
          Length = 447

 Score = 70.5 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 80/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         +  DK+ +   +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAEQVEQSGFIFVGPKAETIRIMGDKVSAITAMKKAGVPCVPGSDG 136

Query: 112 LVNRFTMDSQH---LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
            +N     ++     I  P +IK   GG   G+ V++ +  +   +     ++ +  + D
Sbjct: 137 PLNDDEAANKAHAKRIGYPVIIKASGGGGGRGMRVVRTEGELTEAIAMTRAEAKACFNND 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E++++    +   V+ D       +            K          PA  I  +
Sbjct: 197 MVYMEKFLENPRHVEVQVIADGQGGAIHLGERDCSMQRRHQK-----VVEEAPAPGITEE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + K +      A   IG RG    +FL+   + + +++E+N 
Sbjct: 252 MRKYIGERCTRACLEIGYRGAGTFEFLY--ENGEFYFIEMNT 291


>gi|150400093|ref|YP_001323860.1| pyruvate carboxylase subunit A [Methanococcus vannielii SB]
 gi|150012796|gb|ABR55248.1| acetyl-CoA carboxylase, biotin carboxylase [Methanococcus vannielii
           SB]
          Length = 506

 Score = 70.5 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 80/221 (36%), Gaps = 20/221 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+           I +      A  +   K+ +K+ +   GVPV P    
Sbjct: 77  AIHPGYGFLSENVKFAEACAKKGIEFIGPPTNAIDVMGSKINAKKAMKDAGVPVLPGREE 136

Query: 114 NRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGD 164
                +        I  P +IK   GG  +G+ V+   + +   +     +  S++    
Sbjct: 137 PIENEEDAILVAEEIGYPVIIKASAGGGGIGMNVVYNKEELVDTINSTKSIAQSAFG-DS 195

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            + IE+Y++    +   V+ D   ++  +   +        K             +  ++
Sbjct: 196 TVFIEKYLEKPRHIEIQVVADKFGNIIHLGDRECSIQRRHQK----LIEEAPSPIMTEEL 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             ++   A  A +AI    +   +FL+   + + ++LE+N 
Sbjct: 252 RAKMGEAAIKAAKAIDYHSVGTVEFLY--SNGEFYFLEMNT 290


>gi|260591002|ref|ZP_05856460.1| phosphoribosylglycinamide formyltransferase 2 [Prevotella veroralis
           F0319]
 gi|260536867|gb|EEX19484.1| phosphoribosylglycinamide formyltransferase 2 [Prevotella veroralis
           F0319]
          Length = 394

 Score = 70.5 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 41/244 (16%), Positives = 77/244 (31%), Gaps = 34/244 (13%)

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD-----KMR 95
           ++  V+    PD+    +     E         L         I  SA +++     +  
Sbjct: 55  ALDAVVDFHSPDIIVPEIEAIRTE--------RLFNYEQQGIQIAPSARAVNFTMNRRAI 106

Query: 96  SKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153
                   G+          +     +   I  P V+KPL   S  G   +  D  +   
Sbjct: 107 RDLAARELGLRTAKYFYAKTYEEFKTAADEIGFPCVVKPLMSSSGHGQSYVHNDAELEEA 166

Query: 154 LLQSSSWNHGD--QLLIEQYVDGIE----LTCGVMGDASLDVTEIAVPKSDFYSYELKYS 207
              +     GD  +++IE+++D       LT       +L    I   +     Y   + 
Sbjct: 167 FKNAMEGARGDVKEVIIEEFIDFDSEFTLLTVTQKNGPTLFCPPIGHIQKGG-DYRESW- 224

Query: 208 SLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP- 266
                   P  I  D  ++ + +A     A+   GI   +F       +V + E++ +P 
Sbjct: 225 -------QPYAISEDALRQAEHIAKKVTNALTGYGIWGVEFFLTKQ-GEVIFSELSPRPH 276

Query: 267 --GM 268
             GM
Sbjct: 277 DTGM 280


>gi|110638024|ref|YP_678231.1| biotin carboxylase subunit of acetyl CoA carboxylase [Cytophaga
           hutchinsonii ATCC 33406]
 gi|110280705|gb|ABG58891.1| biotin carboxylase, subunit of acetyl CoA carboxylase [Cytophaga
           hutchinsonii ATCC 33406]
          Length = 448

 Score = 70.5 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 77/221 (34%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     + E   I +  +         DK  +K  +   GVP  P    
Sbjct: 77  AIHPGYGFLSENAKFSQVCEDYGIKFIGASAAMINSMGDKASAKDTMKKAGVPCIPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS-----SSWNHGD 164
            +      +   + +  P ++K   GG   G+ +I+ D+      + +     +S+ +  
Sbjct: 137 LLGSIEEGIKLANKVKYPVILKATAGGGGRGMRIIRSDREFEKAWVDAKQEAGASFGNDG 196

Query: 165 QLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
             L E++++    +   ++GD    V  ++           K             I   +
Sbjct: 197 LYL-EKFIEEPRHIEVQLLGDKFGTVVHLSERDCSIQRRHQK----LIEETPSPIITERL 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             ++   A    ++I   G    +FL D      +++E+N 
Sbjct: 252 RTKMGEAAVKGAKSIKYEGAGTIEFLVDKH-GDFYFMEMNT 291


>gi|323498780|ref|ZP_08103766.1| acetyl-CoA carboxylase biotin carboxylase subunit [Vibrio
           sinaloensis DSM 21326]
 gi|323316142|gb|EGA69167.1| acetyl-CoA carboxylase biotin carboxylase subunit [Vibrio
           sinaloensis DSM 21326]
          Length = 447

 Score = 70.5 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 80/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         +  DK+ +   +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAEQVERSGFIFVGPKAETIRIMGDKVSAITAMKKAGVPCVPGSDG 136

Query: 112 -LVNRFTMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
            L +    +  H   I  P +IK   GG   G+ V++ +  +   +     ++ +  + D
Sbjct: 137 PLDDDEHANKAHAKRIGYPVIIKASGGGGGRGMRVVRSEGELIEAIAMTRAEAKAAFNND 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E++++    +   V+ D       +            K          PA  I  +
Sbjct: 197 MVYMEKFLENPRHVEVQVIADGQGGAIHLGERDCSMQRRHQK-----VVEEAPAPGITEE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + K +      A   IG RG    +FL+   + + +++E+N 
Sbjct: 252 MRKYIGERCTRACLEIGYRGAGTFEFLY--ENGEFYFIEMNT 291


>gi|297154847|gb|ADI04559.1| urea amidolyase [Streptomyces bingchenggensis BCW-1]
          Length = 1194

 Score = 70.5 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 74/220 (33%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   ED       E   I +         L   K  ++      GVP+ P   +
Sbjct: 81  AIHPGYGFLSEDAEFARRCEAAGIVFVGPSPEQLELFGAKHTARAAAERAGVPLAPGTGL 140

Query: 114 NRF---TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ----SSSWNHGDQL 166
                    +   I  P ++K   GG  +G+        +     +    +S+      +
Sbjct: 141 LPDLPAAHAAAERIGYPVMLKATGGGGGIGMGACHGPDELADAWERVQRVASASFSSHGV 200

Query: 167 LIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIY 224
            +E+ V+    +   V GD    V  +           L+  +       PA  +P  + 
Sbjct: 201 FLERLVEQARHVEVQVFGDGLGRVVVL-----GDRDCSLQRRNQKVLEEAPAPGLPDAVR 255

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +   A     ++G R     +F++D   ++ ++LE+N 
Sbjct: 256 ASLAASARDLCASVGYRSAGTVEFVYDAARQEAYFLEVNT 295


>gi|220933554|ref|YP_002512453.1| acetyl-CoA carboxylase, biotin carboxylase [Thioalkalivibrio sp.
           HL-EbGR7]
 gi|219994864|gb|ACL71466.1| acetyl-CoA carboxylase, biotin carboxylase [Thioalkalivibrio sp.
           HL-EbGR7]
          Length = 448

 Score = 70.5 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 79/221 (35%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      +E     +         L  DK+ +K  +   GVP  P    
Sbjct: 77  AIHPGYGFLAENADFAERVESSGFVFIGPRAATIRLMGDKVCAKDAMLKAGVPCVPGSGG 136

Query: 114 NRFTMDSQHL-----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGD 164
                  ++L     I  P +IK   GG   G+ V+  + ++   +     ++ +  + D
Sbjct: 137 ALGDDPDENLRTAREIGYPVIIKAAGGGGGRGMRVVHSEGALLSSISLTRNEARNAFNND 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            + +E++++    +   ++ D   +   +            K             I  + 
Sbjct: 197 TVYMEKFLEHPRHIEFQILADEHGNAVHLGERDCSMQRRHQKVL----EEAPAPGITEEQ 252

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +      A + IG RG    +FL++    + +++E+N 
Sbjct: 253 RRRIGERCAQACRDIGYRGAGTFEFLYEK--GEFYFIEMNT 291


>gi|156309395|ref|XP_001617702.1| hypothetical protein NEMVEDRAFT_v1g156960 [Nematostella vectensis]
 gi|156195349|gb|EDO25602.1| predicted protein [Nematostella vectensis]
          Length = 378

 Score = 70.5 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 41/249 (16%), Positives = 86/249 (34%), Gaps = 17/249 (6%)

Query: 25  ALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84
           AL  +G     +D+D+ +  +      D      +G   E+       +   + +     
Sbjct: 56  ALNGSGVAAY-LDMDQ-LIAIAQAQGCDAVHPG-YGFLAENAEFARRCQAAGLCFVGPSS 112

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP--PYVIKPLKGGSSLGII 142
               L  DK  ++++   C VP+   I       ++    +     ++K L GG   G+ 
Sbjct: 113 EVLQLFGDKAAARELAERCAVPLVAGINRPISLAEAHGFFAEHGAVMLKALAGGGGRGMR 172

Query: 143 VIKKDQSIPLDLL----QSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKS 197
            +     +         ++ +    D L IEQ ++    +   V+GDA+  V+ +     
Sbjct: 173 PVFAASELDEAFARCQSEARAAFGNDALYIEQLINQARHIEIQVLGDATGAVSHVWERDC 232

Query: 198 DFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS-R 255
                + K        + P   +P      +   A     A   +G+   +FL D     
Sbjct: 233 SLQRRQQKL-----VEIAPSPDLPAATLDRMIACALKLAGAAKYQGLGTFEFLLDAEQPE 287

Query: 256 KVFWLEINV 264
           + +++E N 
Sbjct: 288 RFYFMEANP 296


>gi|34496440|ref|NP_900655.1| acetyl-CoA carboxylase biotin carboxylase subunit [Chromobacterium
           violaceum ATCC 12472]
 gi|34102293|gb|AAQ58659.1| biotin carboxylase protein [Chromobacterium violaceum ATCC 12472]
          Length = 451

 Score = 70.5 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 34/222 (15%), Positives = 78/222 (35%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         +  DK+ +K  +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAERVEQSGFVFIGPRPDTIRMMGDKVSAKHAMIEAGVPCVPGSDG 136

Query: 112 LVNRFTMD---SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGD 164
            +     +       I  P +IK   GG   G+ V+  + ++   +     ++ +     
Sbjct: 137 ALPDDPAEIVKIAKKIGFPVIIKAAGGGGGRGMRVVHTEGALINSVQMTRTEAGAAFGNP 196

Query: 165 QLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E++++    +   ++ D   +   +            K          PA  I   
Sbjct: 197 TVYMEKFLELPRHIEIQILADEYGNAIYLGERDCSMQRRHQK-----IIEEAPAPGITDK 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +++      A + IG RG    +FL+   + + +++E+N 
Sbjct: 252 QRQKIGEACAEACRRIGYRGAGTFEFLY--ENGEFYFIEMNT 291


>gi|315922173|ref|ZP_07918413.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313696048|gb|EFS32883.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 511

 Score = 70.5 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 84/221 (38%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       +   I +            DK+ ++  +   GVPV P    
Sbjct: 84  AIHPGYGFLSENATFARRCQEEGIIFIGPNPETMEAMGDKIAARIKMIEAGVPVVPGTQD 143

Query: 114 NRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
           N  +++      + I  P ++K   GG   G+ +I   + +      + S +      D 
Sbjct: 144 NLKSVEEAIELCNKIGYPVMLKASMGGGGKGMRLIHSAEEVEEAYTTAKSESLSSFGDDT 203

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLN-STHVLPAKIPLDI 223
           + +E++V+    +   ++GD   +V  +   +        K      S  V PA     +
Sbjct: 204 VYLEKFVEEPHHIEFQILGDKHGNVIHLCERECSVQRRNQKIVEETPSVFVTPA-----L 258

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            K++   A  A +A+   G    +FL D   R  ++LE+N 
Sbjct: 259 RKDMGEKAVAAAKAVNYIGAGTIEFLVDKH-RNYYFLEMNT 298


>gi|160876086|ref|YP_001555402.1| carbamoyl-phosphate synthase L chain ATP-binding [Shewanella
           baltica OS195]
 gi|160861608|gb|ABX50142.1| Carbamoyl-phosphate synthase L chain ATP-binding [Shewanella
           baltica OS195]
 gi|315268282|gb|ADT95135.1| Carbamoyl-phosphate synthase L chain ATP-binding protein
           [Shewanella baltica OS678]
          Length = 680

 Score = 70.5 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 43/222 (19%), Positives = 81/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       E   I +   G  A      K  +K ++++  VP+ P    
Sbjct: 82  AIHPGYGFLSENADFARKCEAAGIAFVGPGSDAIDAMGSKSAAKSIMTAANVPLVPGYHG 141

Query: 114 NRFTM----DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGD 164
           +  T          I  P +IK   GG   G+ +++ +  I   +       +SS+   D
Sbjct: 142 DDQTDATLKAEALKIGFPMLIKAAYGGGGKGMRIVENEGEIMEAVNSARREAASSFG-ND 200

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
           +LL+E+Y+     +   V  D   +   ++           K          PA  +   
Sbjct: 201 KLLMERYLRQPRHVEVQVFADTFGNAIYLSDRDCSIQRRHQK-----VVEEAPAPGLSDA 255

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +  ++   A  A +AI   G    +FL D      +++E+N 
Sbjct: 256 LRAQMGDAAVAAAKAIDYVGAGTVEFLLDT-DNSFYFMEMNT 296


>gi|91228892|ref|ZP_01262794.1| acetyl-CoA carboxylase [Vibrio alginolyticus 12G01]
 gi|269966804|ref|ZP_06180877.1| acetyl-CoA carboxylase, biotin carboxylase [Vibrio alginolyticus
           40B]
 gi|91187557|gb|EAS73887.1| acetyl-CoA carboxylase [Vibrio alginolyticus 12G01]
 gi|269828471|gb|EEZ82732.1| acetyl-CoA carboxylase, biotin carboxylase [Vibrio alginolyticus
           40B]
          Length = 447

 Score = 70.5 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 79/222 (35%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         L  DK+ +   +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAEQVERSGFIFVGPKADTIRLMGDKVSAINAMKKAGVPCVPGSDG 136

Query: 112 LVNRFTM---DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
            ++            I  P +IK   GG   G+ V++ ++ +   +     ++ +  + D
Sbjct: 137 PLDNDEEKNKAFAKRIGYPVIIKASGGGGGRGMRVVRAEKDLIQAIAMTRAEAKAAFNND 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E++++    +   V+ D       +            K          PA  I  +
Sbjct: 197 MVYMEKFLENPRHVEVQVIADGQGGAIHLGERDCSMQRRHQK-----VVEEAPAPGITEE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + K +      A   IG RG    +FL+   + + +++E+N 
Sbjct: 252 MRKYIGERCTRACIEIGYRGAGTFEFLY--ENGEFYFIEMNT 291


>gi|88706209|ref|ZP_01103916.1| phosphoribosylglycinamide formyltransferase 2 [Congregibacter
           litoralis KT71]
 gi|88699603|gb|EAQ96715.1| phosphoribosylglycinamide formyltransferase 2 [Congregibacter
           litoralis KT71]
          Length = 393

 Score = 70.5 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 46/283 (16%), Positives = 101/283 (35%), Gaps = 50/283 (17%)

Query: 19  GKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIP 78
           GK  A  L+  G +V   D   +   +    +    F +L G       ++A +E+ +  
Sbjct: 24  GKEVAIELQRLGIEVIACDRYANAPAMQVADR-SYVFPMLDGE-----RLRAAIEMEKPD 77

Query: 79  YT------------------HSGILASA----LSMDKM-RSKQVVSSCGVPVCPSILVNR 115
           +                      ++ SA    L+M++    + V  S  +   P    + 
Sbjct: 78  FIVPEIEAIDTDTLAKLEDEGFNVVPSARAAQLTMNREGIRRLVAESLDIATSPYRFADT 137

Query: 116 FTM--DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL--QSSSWNHGDQLLIEQY 171
                 +   I  P V+KP+   S  G  V++  + I       Q        +L++E +
Sbjct: 138 REAFETAIDEIGMPCVVKPIMSSSGKGQSVVRSREDIQAAWDFGQEGGRAGAGRLIVEGF 197

Query: 172 VDGIELTCGVMGDASLDVTEIAVP---KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           VD  +    ++    +       P   + +   Y   +         P  +  ++ ++ +
Sbjct: 198 VD-FDYEITLLTVQHISGVSFCAPIGHRQEDGDYRESW--------QPHVMDPEVLQQCE 248

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP---GM 268
            +A     A+G +G+   +F      ++V++ E++ +P   GM
Sbjct: 249 DIAARVTGALGGKGLFGVEFFIR--GKEVYFSEVSPRPHDTGM 289


>gi|326430749|gb|EGD76319.1| carbamylphosphate synthetase 1 [Salpingoeca sp. ATCC 50818]
          Length = 1560

 Score = 70.5 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 50/310 (16%), Positives = 99/310 (31%), Gaps = 47/310 (15%)

Query: 7    GISSEREVSLSSGKACASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNV 57
            G S E + S      C   L   G K   +         D D S  L    L  +   ++
Sbjct: 1000 GSSVEFDYS---AVQCVRTLRSLGHKTIMVNYNPETVSTDYDESDRLYFEELSLERVLDI 1056

Query: 58   LHGNFGE---------DGLVQAILEL----LEIPYTHSGILASALSMDKMRSKQVVSSCG 104
                  E          G +   L L      +P   +       + D+ +   ++   G
Sbjct: 1057 ---YDKELPTGTVVSVGGQIPNNLSLSLHDAGVPVVGTDPREIDRAEDRHKYSSLMDQVG 1113

Query: 105  VPVCPSILVNRF--TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
            +       ++ F    +  + +  P +++P    S   + V++  + +   L +++  + 
Sbjct: 1114 IDQPAWRELSSFGDAEEFCNQVGYPVLVRPSYVLSGAAMNVVRTKEQLQRYLKEAADVSK 1173

Query: 163  GDQLLIEQYV-DGIELT---CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA- 217
               ++I +++ D  E+        G   +      V  +  +S        ++T VLPA 
Sbjct: 1174 DHPVVISKFIEDAREIELDAVAQEGRLVVHAIAEHVENAGVHS-------GDATLVLPAQ 1226

Query: 218  KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
             +  + Y  V        QA+   G     FL       +  +E N    +      P  
Sbjct: 1227 NLTSEEYNGVLASGKAIAQALNISGPFNCQFLLTK-DGAIKVIETN----LRASRSLPFC 1281

Query: 278  AAYAGYSFRE 287
            +   G  F E
Sbjct: 1282 SKVLGVDFAE 1291



 Score = 57.1 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 49/299 (16%), Positives = 102/299 (34%), Gaps = 40/299 (13%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G K   ++ +                       V  ++A  +PD  F 
Sbjct: 465 SGSQAIKALKEKGIKSVLVNPNIATVQTAEGLADQVYLMPIEPEFVQEIIAKERPDGIFL 524

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCG--VPVCPS 110
              G    +  V+     +L    +    + + +   + D+    Q +   G  +    +
Sbjct: 525 QFGGQTALNCGVELDRNGVLAQYGVRVLGTSVNSIIATEDREIFAQKLLDIGESIATSVA 584

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  + +   I  P +++       LG      ++ +    L S +++   Q+L+E+
Sbjct: 585 ATSTDAAIQAAREIGYPVIVRAAFSLGGLGSGFAHDEEQLRR--LCSRAFSQCPQVLVEK 642

Query: 171 YVDG-IELTCGVMGDA-SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            + G  E+   V+ D     VT   +   D           +S  + P++ +    Y  +
Sbjct: 643 SLKGWKEIEYEVVRDQYDNCVTVCNMENFDPLGIHT----GDSIVIAPSQTLSDQDYHML 698

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           +  +    + +G  G     F  DP SR+   +E N  P ++  S     +   GY   
Sbjct: 699 RSASIRVARTLGIVGECNVQFALDPNSREYCIIEAN--PRLSRSS--ALASKATGYPLA 753


>gi|307110157|gb|EFN58393.1| hypothetical protein CHLNCDRAFT_55993 [Chlorella variabilis]
          Length = 633

 Score = 70.5 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 40/231 (17%), Positives = 80/231 (34%), Gaps = 30/231 (12%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      +E     +      A     DK+ SK++ ++  V   P    
Sbjct: 60  AVHPGYGFLSENSHFVEAVEAAGATFVGPPTHAVEKMGDKVESKKIAAAAKVNTIPGWAG 119

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSL---------GIIVIKKDQSIPLDLLQ---- 156
                D        I  P +IK   GG            G+ V   ++ +          
Sbjct: 120 VTENADHAISVAREIGFPVMIKASAGGGGKATRRRVLVQGMRVAWNEKELLEGYELCTQE 179

Query: 157 -SSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHV 214
            +S++    ++LIE++++    +   V+GD   +V      +        K         
Sbjct: 180 AASAFG-DARMLIEKFIEQPRHVEIQVLGDKWGNVIYFPERECSIQRRNQK-----VIEE 233

Query: 215 LPAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            P+ +    + + +   A    +A+G       +FL +P  R+  +LE+N 
Sbjct: 234 APSPLVTPAMRRAMGEQAVALCKAVGYHSAGTVEFLANPQ-REFHFLEMNT 283


>gi|262392970|ref|YP_003284824.1| biotin carboxylase of acetyl-CoA carboxylase [Vibrio sp. Ex25]
 gi|262336564|gb|ACY50359.1| biotin carboxylase of acetyl-CoA carboxylase [Vibrio sp. Ex25]
          Length = 447

 Score = 70.5 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 79/222 (35%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         L  DK+ +   +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAEQVERSGFIFVGPKADTIRLMGDKVSAINAMKKAGVPCVPGSDG 136

Query: 112 LVNRFTM---DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
            ++            I  P +IK   GG   G+ V++ ++ +   +     ++ +  + D
Sbjct: 137 PLDNDEEKNKAFAKRIGYPVIIKASGGGGGRGMRVVRAEKDLIQAIAMTRAEAKAAFNND 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E++++    +   V+ D       +            K          PA  I  +
Sbjct: 197 MVYMEKFLENPRHVEVQVIADGQGGAIHLGERDCSMQRRHQK-----VVEEAPAPGITEE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + K +      A   IG RG    +FL+   + + +++E+N 
Sbjct: 252 MRKYIGERCTRACIEIGYRGAGTFEFLY--ENGEFYFIEMNT 291


>gi|260173908|ref|ZP_05760320.1| pyruvate carboxylase subunit A [Bacteroides sp. D2]
          Length = 504

 Score = 70.5 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 84/221 (38%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       +   I +            DK+ ++  +   GVPV P    
Sbjct: 77  AIHPGYGFLSENATFARRCQEEGIIFIGPNPETMEAMGDKIAARIKMIEAGVPVVPGTQD 136

Query: 114 NRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
           N  +++      + I  P ++K   GG   G+ +I   + +      + S +      D 
Sbjct: 137 NLKSVEEAIELCNKIGYPVMLKASMGGGGKGMRLIHSAEEVEEAYTTAKSESLSSFGDDT 196

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLN-STHVLPAKIPLDI 223
           + +E++V+    +   ++GD   +V  +   +        K      S  V PA     +
Sbjct: 197 VYLEKFVEEPHHIEFQILGDKHGNVIHLCERECSVQRRNQKIVEETPSVFVTPA-----L 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            K++   A  A +A+   G    +FL D   R  ++LE+N 
Sbjct: 252 RKDMGEKAVAAAKAVNYIGAGTIEFLVDKH-RNYYFLEMNT 291


>gi|254441537|ref|ZP_05055030.1| Carbamoyl-phosphate synthase L chain, ATP binding domain protein
           [Octadecabacter antarcticus 307]
 gi|198251615|gb|EDY75930.1| Carbamoyl-phosphate synthase L chain, ATP binding domain protein
           [Octadecabacter antarcticus 307]
          Length = 461

 Score = 70.5 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 74/220 (33%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E       +E   I +            DK+ +++   + GVPV P    
Sbjct: 78  AVHPGYGFLSESPEFAHAIESAGITFVGPTAATIERMGDKVEARKAAEAAGVPVVPGSKG 137

Query: 114 NRFTMDSQHLI----SPPYVIKPLKGGSSLGIIVIKKDQSI-----PLDLLQSSSWNHGD 164
              T+D    I      P +IK   GG   GI V   +  +            +++  G 
Sbjct: 138 RIETVDDAAQIASDIGYPVMIKAAAGGGGRGIRVADNEGELRSLAPQAQAEAEAAFGDGG 197

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             L         +   ++GD + +       +        K             +  +  
Sbjct: 198 LYLERAVRSPRHIEVQILGDGT-NAVHCFERECSIQRRRQK----VWEEAGAVCLDEETR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + + + A    +A+  RG    ++L+D  + + F++E+N 
Sbjct: 253 QTLCKSAVALAKAVNYRGAGTLEYLYDEATNEFFFIEMNT 292


>gi|172046631|sp|Q3AUF2|PURT_SYNS9 RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
          Length = 392

 Score = 70.5 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 38/245 (15%), Positives = 94/245 (38%), Gaps = 26/245 (10%)

Query: 32  KVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSM 91
           +V Q+    ++  V+   +PD+    +     E     A LE   I        A+A +M
Sbjct: 50  EVFQMTDATALKEVVQRHRPDVVIPEIEALAVE---ALAELEQDGITVI-PTARATAFTM 105

Query: 92  DKMRSKQVVSS-CGVPVCPSILVNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVIKKDQ 148
           ++ + + + S   G+        +           +  P V+KP+   S  G  V++  +
Sbjct: 106 NRDQIRDLASGELGLHTARFAYASNAAELKKVAAPLGWPVVVKPVMSSSGKGQSVVQTPE 165

Query: 149 SIPLD--LLQSSSWNHGDQLLIEQYVDGIELTCGVM-----GDASLDVTEIAVPKSDFYS 201
            +        +++    +Q+++E++++  +L   ++        +L    I   + +   
Sbjct: 166 QLDQAWEAAMANARGTSNQVIVEEFLE-FDLEITLLTIRQRNGETLFCPPIG-HEQERGD 223

Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
           Y+  +         PA++     ++ Q +A      +G  G+   +F       +V + E
Sbjct: 224 YQCSW--------QPAQMSDAQLQQAQTMARTVTDNLGGAGLFGVEFFL--CGNEVIFSE 273

Query: 262 INVQP 266
           ++ +P
Sbjct: 274 LSPRP 278


>gi|158321131|ref|YP_001513638.1| cyanophycin synthetase [Alkaliphilus oremlandii OhILAs]
 gi|158141330|gb|ABW19642.1| cyanophycin synthetase [Alkaliphilus oremlandii OhILAs]
          Length = 882

 Score = 70.5 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 49/111 (44%), Gaps = 5/111 (4%)

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIV-IK 145
           ++ DK  + +++ + GVPV    + N      +    + PP V+KP  G    G+ + + 
Sbjct: 211 IACDKELTNRILRNHGVPVPEGRISNTLEEVFEIVERLKPPIVVKPYNGNQGKGVSLNLY 270

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK 196
             + I      +  +   D++LIE++++G      V+G   +  +E     
Sbjct: 271 TKEEIIRAFHIAKQF--SDKVLIEKFIEGKHYRITVVGGKVVAASERIAAH 319


>gi|157960434|ref|YP_001500468.1| carbamoyl-phosphate synthase L chain ATP-binding [Shewanella pealeana
            ATCC 700345]
 gi|157845434|gb|ABV85933.1| Carbamoyl-phosphate synthase L chain ATP-binding [Shewanella pealeana
            ATCC 700345]
          Length = 1517

 Score = 70.5 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 84/221 (38%), Gaps = 18/221 (8%)

Query: 57   VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
             LH   G   E     A+     + +    + +     +K  + +   +  VPV P    
Sbjct: 1018 ALHPGIGFLSESPQFAALCVNNGVNFVGPSVHSMTTMGNKSNAIKTSQAQNVPVVPGSHG 1077

Query: 111  -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI-----PLDLLQSSSWNHGD 164
             +      ++    I  P ++K ++GG   GI V+++   +           ++++ +GD
Sbjct: 1078 ILTNAEQAVNVASEIGYPVLLKAVQGGGGKGIQVVERPGDMISLFQKTSTEAAAAFGNGD 1137

Query: 165  QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
              L E+YV     +   ++ D   +   + +          K    + + +    +P ++
Sbjct: 1138 LYL-EKYVTSLRHIEVQLLRDQFGNTKVLGLRDCSVQRNNQKVVEESGSTM----LPDEL 1192

Query: 224  YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             + V     L   A    G    +F+++  + +V+++E+N 
Sbjct: 1193 KQRVMEYTRLLGDATDYMGAGTVEFIYNLDANEVYFMEMNT 1233


>gi|288957916|ref|YP_003448257.1| biotin carboxylase [Azospirillum sp. B510]
 gi|288910224|dbj|BAI71713.1| biotin carboxylase [Azospirillum sp. B510]
          Length = 446

 Score = 70.5 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 77/221 (34%), Gaps = 20/221 (9%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+     ++E     +         +  DK+ +K+ V   G+PV P    
Sbjct: 77  AIHPGIGFLSENAQFAEMVEEHGFTFIGPTPEHIRIMGDKVTAKKTVMEQGLPVVPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
            +          H    P +IK   GG   G+ V +    +      + +        D+
Sbjct: 137 PVSTLEEAEKVAHETGYPVLIKAAAGGGGKGMKVARNPDQLKEAYQFARAEARAAFGNDE 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           + +E+Y+     +   ++GD     T             ++          P+  +  + 
Sbjct: 197 VYLEKYLGRPRHIEIQLLGD-----THGTCVHFGERDCSVQRRHQKVIEEAPSPALNTEQ 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              +  LA     AIG RG+   +FL+     + +++E+N 
Sbjct: 252 RAYIGELAAKTAAAIGYRGVGTMEFLY--EDGQFYFIEMNT 290


>gi|297560125|ref|YP_003679099.1| pyruvate carboxylase [Nocardiopsis dassonvillei subsp. dassonvillei
           DSM 43111]
 gi|296844573|gb|ADH66593.1| pyruvate carboxylase [Nocardiopsis dassonvillei subsp. dassonvillei
           DSM 43111]
          Length = 1126

 Score = 70.5 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 37/215 (17%), Positives = 74/215 (34%), Gaps = 15/215 (6%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
           +G   E+  +    E   I +         L+ +K  +       GVPV  S   +    
Sbjct: 83  YGFLSENPELARACERAGITFVGPPADVLELTGNKASAVAAAREAGVPVLESSEPSDDVE 142

Query: 119 ---DSQHLISPPYVIKPLKGGSSLGIIVIKK----DQSIPLDLLQSSSWNHGDQLLIEQY 171
               +   I  P  +K + GG   G+  +++     +++   + ++S+      + +E+ 
Sbjct: 143 ALVAAAERIGFPLFVKAVAGGGGRGMRRVQEPERLREAVEAAMREASAAFGDATVFLERA 202

Query: 172 -VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQR 229
            VD   +   ++ D    V  +           L+        + PA  +  D+   +  
Sbjct: 203 VVDPRHIEVQILADGEGGVVHLYE-----RDCSLQRRHQKVIELAPAPNLDPDLRDRICA 257

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            A    + IG R     +FL       VF  E+N 
Sbjct: 258 DAVRFARRIGYRNAGTVEFLVGADGSHVFI-EMNP 291


>gi|187929492|ref|YP_001899979.1| Carbamoyl-phosphate synthase L chain ATP-binding [Ralstonia
           pickettii 12J]
 gi|309781732|ref|ZP_07676465.1| methylmalonyl-CoA carboxyltransferase 12S subunit [Ralstonia sp.
           5_7_47FAA]
 gi|187726382|gb|ACD27547.1| Carbamoyl-phosphate synthase L chain ATP-binding [Ralstonia
           pickettii 12J]
 gi|308919373|gb|EFP65037.1| methylmalonyl-CoA carboxyltransferase 12S subunit [Ralstonia sp.
           5_7_47FAA]
          Length = 1103

 Score = 70.5 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 75/220 (34%), Gaps = 19/220 (8%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
           +G   E+           + +         L  DK R++ +    G+PV           
Sbjct: 82  YGFLSENAAFARQCAQAGVQFIGPSPRVLDLFGDKARARALAHEAGIPVVSGTQGATTLE 141

Query: 119 DSQHLIS--PP---YVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQLLIE 169
           +++   +  PP    +IK + GG   G+  +   Q+I         ++++   G  + +E
Sbjct: 142 EARAFFAALPPSHGMMIKAVSGGGGRGMRAVHDAQAIADAYARCVSEATAAGGGSDVYVE 201

Query: 170 QYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
             V     +   ++ DA   VT +   +        K        + P+  +   +   +
Sbjct: 202 ALVPAPRHIEIQIVADAHGHVTHLGERECSLQRRHQKL-----IEIAPSPALDDALRARI 256

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRK---VFWLEINV 264
              A    +A G  GI   +FL +         +++E N 
Sbjct: 257 AEAAVTLAKAAGYSGIGTFEFLVEGAGTPHATFYFMEANP 296


>gi|146313328|ref|YP_001178402.1| acetyl-CoA carboxylase biotin carboxylase subunit [Enterobacter sp.
           638]
 gi|145320204|gb|ABP62351.1| acetyl-CoA carboxylase carboxyltransferase subunit alpha
           [Enterobacter sp. 638]
          Length = 449

 Score = 70.5 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 42/222 (18%), Positives = 81/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         L  DK+ +   +   GVP  P    
Sbjct: 77  AIHPGYGFLSENANFAEQVERSGFIFIGPKADTIRLMGDKVSAITAMKKAGVPTVPGSDG 136

Query: 112 -LVNRFTMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
            L +    +  H   I  P +IK   GG   G+ V++ D  +   +     ++ +    D
Sbjct: 137 PLTDDMDANRAHAKRIGYPVIIKASGGGGGRGMRVVRSDTDLAQSIAMTKAEAKAAFSND 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+Y++    +   V+ D   +   +A           K          PA  I  +
Sbjct: 197 MVYMEKYLENPRHIEIQVLADGQGNAIYLAERDCSMQRRHQK-----VVEEAPAPGITPE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + + +      A   IG RG    +FLF   + + +++E+N 
Sbjct: 252 LRRYIGERCSKACVDIGYRGAGTFEFLF--ENGEFYFIEMNT 291


>gi|304311953|ref|YP_003811551.1| Carbamoyl-phosphate synthase large chain [gamma proteobacterium
           HdN1]
 gi|301797686|emb|CBL45908.1| Carbamoyl-phosphate synthase large chain [gamma proteobacterium
           HdN1]
          Length = 1073

 Score = 70.5 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 36/232 (15%), Positives = 88/232 (37%), Gaps = 12/232 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--QHLISPPYV 129
           LE   +P   +   A   + D+ R +Q+++  G+   P+               I  P V
Sbjct: 653 LEAAGVPIIGTSPDAIDRAEDRERFQQMINRLGLLQPPNRTARSEEEAVRYAEEIGYPLV 712

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  +  +   + ++   ++   +L++ ++ D IE+   ++ D    
Sbjct: 713 VRPSYVLGGRAMEIVYSESELRRYMREAVQVSNDCPVLLDHFLDDAIEVDLDLVSDGRTS 772

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           V    +   +       +S  ++  + P  +  D+ + ++  A      +G  G+    F
Sbjct: 773 VIGGILQHIEQAGI---HSGDSACSLPPYSLSADLQETMREQARRMAAELGVVGLMNVQF 829

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
                   V+ LE+N +   T     P ++   G S  ++    +E  S  +
Sbjct: 830 AVKK--NDVYVLEVNPRASRT----VPFISKCIGISLAKIAARCMEGTSLEK 875



 Score = 63.2 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 44/278 (15%), Positives = 99/278 (35%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D              ++V  V+   +PD    
Sbjct: 29  SGAQACKALREEGYRVVLVNSNPATIMTDPAMADSTYIEPVNWQTVAKVIEKERPDAILP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      +L+   +    +   A   + D+ R  + + S G+    S +
Sbjct: 89  TMGGQTALNCALDLAKHGVLKEFGVELIGANADAIDKAEDRERFDRAMKSIGLETPRSAI 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     +  Q  +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHSLEEALQVQDRLGFPCIIRPSFTLGGSGGGIAYNREEFVEICNRGLDLSPTSELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + + +   ++   D           +S  V P++ +    Y+ +
Sbjct: 209 SLIGWKEFEMEVVRDRNDNCIIVCSIENFDPMGVHT----GDSITVAPSQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P+  ++  +E+N 
Sbjct: 265 RDASIAVLREIGVETGGSNVQFGINPVDGRMVVIEMNP 302


>gi|256809978|ref|YP_003127347.1| MGS domain protein [Methanocaldococcus fervens AG86]
 gi|256793178|gb|ACV23847.1| MGS domain protein [Methanocaldococcus fervens AG86]
          Length = 618

 Score = 70.5 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 46/321 (14%), Positives = 108/321 (33%), Gaps = 49/321 (15%)

Query: 11  EREVSLSSGKACASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGN 61
           E + S  S  A   AL++ G +   I         D D S  L    +  +   N+    
Sbjct: 102 EFDYS--SVHAVL-ALKEMGIEAIIINNNPETVSTDYDTSDKLYFEPITFEDVLNIAE-R 157

Query: 62  FGEDGLVQAI---------------LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP 106
             E+G +  +               L+   +    +      ++ D+    +++    +P
Sbjct: 158 EKENGELLGVIVQFGGQTAINLAMKLKKAGVNILGTTPEDINVAEDREEFSKLLKKLNIP 217

Query: 107 VCPS--ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164
                        ++    I  P +++P        + ++  +  +   + ++   +   
Sbjct: 218 QAEGGTAFTKEEALEIAKRIGYPVLVRPSYVLGGRAMQIVYSEDELIEYMEEAVKVSEEH 277

Query: 165 QLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            +LI++++ D IEL    + D    +    +   +       +S  ++T + P  +P +I
Sbjct: 278 PVLIDKFLEDAIELDVDAVCDGESVLIGAIMEHIEEAGV---HSGDSATVIPPQTLPKEI 334

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283
              V        +A+   G+   +  +      V+ LE N +   T     P ++   G 
Sbjct: 335 IDTVIDYTAKLARALNIVGL--LNVQYAVKDGVVYVLEANPRASRT----VPYVSKSVGI 388

Query: 284 SFREL---------LLWMVED 295
              +L         L  +++D
Sbjct: 389 PLAKLATKVMLGKKLEELIKD 409


>gi|226226917|ref|YP_002761023.1| hypothetical protein GAU_1511 [Gemmatimonas aurantiaca T-27]
 gi|226090108|dbj|BAH38553.1| hypothetical protein [Gemmatimonas aurantiaca T-27]
          Length = 405

 Score = 70.5 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 86/223 (38%), Gaps = 23/223 (10%)

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI---SPPYV 129
           E L I        A+    DK R K V+ + GVPV    L+    +D++H +     P V
Sbjct: 96  ERLGI--AGLPSHAAHQFRDKARMKDVLRAAGVPVARHALIT-SALDARHFVAQVGYPIV 152

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL---TCGVMGDAS 186
           +KP  G  +     ++ D  +   L +  + +  D +L E+++ G E    T  + G A 
Sbjct: 153 VKPPAGAGARSTERVRDDAELESMLAR-FAPSAADPMLGEEFLQGTEHSLETVSIGGRAV 211

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC-RGISR 245
                   P        L+   +  T +LP ++    Y +++ +   A  A+G   G+S 
Sbjct: 212 WHSLTRYTPTPL---EVLENPWIQWTVLLPREVDDAQYDDIRAVGDEALTALGMTTGVSH 268

Query: 246 SDFLFDPLSRKVFWLEINVQP---GMTPVSIFPEMAAYAGYSF 285
            ++        +   EI  +P    MT       M+      F
Sbjct: 269 CEWF-RRTDGTLAISEIAARPPGANMT-----TMMSRANDMDF 305


>gi|325091289|gb|EGC44599.1| carbamoyl-phosphate synthase [Ajellomyces capsulatus H88]
          Length = 1215

 Score = 70.5 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 55/291 (18%), Positives = 107/291 (36%), Gaps = 41/291 (14%)

Query: 6   GGIS----SEREVSLSSGKACASALEDAGFK--------------------VSQIDVDRS 41
           GG+S     E + S   G     AL++AG +                    V  + V   
Sbjct: 147 GGLSIGQAGEFDYS---GSQALKALKEAGVESVLINPNIATIQTDHKLADEVYYLPVTPE 203

Query: 42  -VGLVLAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRS 96
            V  V+   +PD  F    G    +  VQ     + +   +    + I    +S D+   
Sbjct: 204 YVTHVIEREQPDGIFLTFGGQTALNLGVQMNRMGVFDRYGVKVLGTSIRTLEVSEDRDLF 263

Query: 97  KQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154
            + ++   +P+  S+ VN     +++   I  P +++       LG       + +    
Sbjct: 264 AKALNEINIPIAESVAVNSVDEALEAAEKIGYPIIVRSAYALGGLGSGFANNAEELK--N 321

Query: 155 LQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTH 213
           L S S     Q+L+E+ + G  E+   V+ DA+ +   I V   + +   L   + +S  
Sbjct: 322 LSSRSLTLAPQILVEKSLKGWKEVEYEVVRDAANN--CITVCNMENFD-PLGIHTGDSIV 378

Query: 214 VLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
           V P++ +  + Y  ++  A    + +G  G     +   P       +E+N
Sbjct: 379 VAPSQTLSDEEYHMLRTAAIKIVRHLGVVGECNVQYALQPDGLDYRVIEVN 429



 Score = 55.5 bits (133), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 27/168 (16%), Positives = 61/168 (36%), Gaps = 6/168 (3%)

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVI 130
           E        +       + D+ +  Q++ S GV       ++           +  P ++
Sbjct: 777 ETGGAKVLGTDPKDIDKAEDRHKFSQILDSIGVDQPAWKELSSVAEAEAFADSVGYPVLV 836

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190
           +P    S   + VI     +   LL +S+ +    ++I ++++G +    +  DA     
Sbjct: 837 RPSYVLSGAAMSVIHSRDELKDKLLSASAVSPDHPVVITKFIEGAQE---IDVDAVASAG 893

Query: 191 EIAVPKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQA 237
           ++ V     +       S ++T V  P  +   I   V+ +A    +A
Sbjct: 894 KLIVHAVSEHVEAAGVHSGDATLVLPPVNLEAPIMARVKEIAEKVAKA 941


>gi|297538522|ref|YP_003674291.1| acetyl-CoA carboxylase, biotin carboxylase [Methylotenera sp. 301]
 gi|297257869|gb|ADI29714.1| acetyl-CoA carboxylase, biotin carboxylase [Methylotenera sp. 301]
          Length = 472

 Score = 70.5 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 44/250 (17%), Positives = 88/250 (35%), Gaps = 23/250 (9%)

Query: 32  KVSQIDVDRSVGLVLAHLKPDLAF----NVLHGNFG---EDGLVQAILELLEIPYTHSGI 84
           +   I  D   G + AH   +LA     + LH  +G   E+  +  I     I +     
Sbjct: 47  EAYNIGADPVAGYLNAHNIVNLAVASGCDALHPGYGFLSENPELAEICARRGIKFIGPNA 106

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSLG 140
                  DK++++  ++S G+P  P    N   ++        I  P ++K   GG   G
Sbjct: 107 AVIRQMGDKIQARNAMTSAGIPCTPGSDGNLEDLNEAIALAAKIGYPVMLKATNGGGGRG 166

Query: 141 IIVIKKDQSIPLDL-----LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195
           I     ++ +  +        S ++   +  L +  V    +   ++ D+  +V  +   
Sbjct: 167 IRRCDSEKELLGNYDRVISEASKAFGKPEVFLEKCVVSPRHIEVQILADSQGNVIHLFER 226

Query: 196 KSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
                    K        + P  ++       +  LA  A +A+G       +FL D   
Sbjct: 227 DCSIQRRNQKL-----IEIAPSPQLTQAQRDYIGGLAVKAAKAVGYENAGTVEFLLD-SD 280

Query: 255 RKVFWLEINV 264
              +++E+N 
Sbjct: 281 NTFYFMEMNT 290


>gi|167622646|ref|YP_001672940.1| carbamoyl-phosphate synthase L chain ATP-binding [Shewanella
            halifaxensis HAW-EB4]
 gi|167352668|gb|ABZ75281.1| Carbamoyl-phosphate synthase L chain ATP-binding [Shewanella
            halifaxensis HAW-EB4]
          Length = 1517

 Score = 70.5 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 84/221 (38%), Gaps = 18/221 (8%)

Query: 57   VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
             LH   G   E     A+     + +    + +     +K  + +   +  VPV P    
Sbjct: 1018 ALHPGIGFLSESPQFAALCVNNGVNFVGPSVHSMTTMGNKSNAIKTSQAQNVPVVPGSHG 1077

Query: 111  -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI-----PLDLLQSSSWNHGD 164
             +      ++    I  P ++K ++GG   GI V+++   +           ++++ +GD
Sbjct: 1078 ILTNAEQAVNVASEIGYPVLLKAVQGGGGKGIQVVERPGDMISLFQKTSTEAAAAFGNGD 1137

Query: 165  QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
              L E+YV     +   ++ D   +   + +          K    + + +    +P ++
Sbjct: 1138 LYL-EKYVTSLRHIEVQLLRDQFGNTKVLGLRDCSVQRNNQKVVEESGSTM----LPDEL 1192

Query: 224  YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             + V     L   A    G    +F+++  + +V+++E+N 
Sbjct: 1193 KQRVMEYTRLLGDATDYMGAGTVEFIYNLDANEVYFMEMNT 1233


>gi|90417871|ref|ZP_01225783.1| methylcrotonyl-CoA carboxylase, alpha subunit [Aurantimonas
           manganoxydans SI85-9A1]
 gi|90337543|gb|EAS51194.1| methylcrotonyl-CoA carboxylase, alpha subunit [Aurantimonas
           manganoxydans SI85-9A1]
          Length = 669

 Score = 70.5 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 77/225 (34%), Gaps = 22/225 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      +    + +      A      K  +K++++  GVPV P    
Sbjct: 77  AIHPGYGFLSENPDFVDAVTAAGLIFVGPSASAIRAMGLKDAAKRLMNEAGVPVVPGYHG 136

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
           +    D        I  P +IK   GG   G+  ++        L  +            
Sbjct: 137 DGQDPDFLASEADQIGYPVLIKARAGGGGKGMRRVEDPGEFRAALDGARREGQASFGDPH 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
            LIE+YV+    +   V GD+  +               L+          PA  +P ++
Sbjct: 197 CLIEKYVEKPRHIEIQVFGDSHGNAV-----HLFERDCSLQRRHQKVIEEAPAPGMPAEM 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR----KVFWLEINV 264
              +   A  A +AIG  G    +F+ D        + +++E+N 
Sbjct: 252 RAAMGEAAVTAAKAIGYAGAGTIEFIVDASDGLRPDRFWFMEMNT 296


>gi|325963375|ref|YP_004241281.1| carbamoyl-phosphate synthase large subunit [Arthrobacter
           phenanthrenivorans Sphe3]
 gi|323469462|gb|ADX73147.1| carbamoyl-phosphate synthase large subunit [Arthrobacter
           phenanthrenivorans Sphe3]
          Length = 1104

 Score = 70.5 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 52/288 (18%), Positives = 110/288 (38%), Gaps = 36/288 (12%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI---------DVD------------RSVGLV 45
           G ++E + S   G      L++ G +V  +         D +              V  +
Sbjct: 21  GQAAEFDYS---GTQALRVLKEEGLRVILVNSNPATIMTDPEFADATYIEPITPEVVEKI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +A  +PD     L G    +  +      +LE   +    + I A  L  D+ + K VV 
Sbjct: 78  IAKERPDAVLPTLGGQTALNTAIALDKNGVLEKYNVELIGANIAAIELGEDREKFKGVVE 137

Query: 102 SCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
            CG     S +++     + +   +  P V++P      LG  +   +  +   + Q   
Sbjct: 138 RCGAESARSHIIHSMDEALKAAEDLGYPMVVRPSFTMGGLGSGLAYNEDDLRRIVGQGLQ 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA- 217
           ++   ++L+E+ + G  E    +M D + +V  +   ++      +   + +S  V PA 
Sbjct: 198 YSPTSEVLLEESILGWKEYELEMMRDKNDNVVVVCSIENFD---PVGVHTGDSITVAPAL 254

Query: 218 KIPLDIYKEVQRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
            +    Y+ ++ ++    + +G   G     F  DP + +V  +E+N 
Sbjct: 255 TLTDREYQRLRDISIAVIREVGVDTGGCNIQFAIDPATGRVVVIEMNP 302



 Score = 52.4 bits (125), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 29/199 (14%), Positives = 74/199 (37%), Gaps = 14/199 (7%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--QHLISPPYV 129
           L    +P   +   A  L+  +    QV+   G+    +     F         I  P +
Sbjct: 652 LADAGVPILGTSPEAIDLAEHRGAFAQVLDKAGLISPKNGTAVSFEDAKKIADEIGYPVL 711

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDAS-- 186
           ++P       G+ ++  + ++   +  ++       +LI++++ D +E+    + D +  
Sbjct: 712 VRPSYVLGGRGMEIVYDEPNLSRYIANATEITPDHPVLIDRFLEDAVEIDVDALFDGTDL 771

Query: 187 -LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
            L      + ++  +S        ++  + P  +  ++ + V+       + +G RG+  
Sbjct: 772 YLGGIMEHIEEAGIHS------GDSACVLPPITLGTNVLERVRTATRAIAEGVGVRGLIN 825

Query: 246 SDFLFDPLSRKVFWLEINV 264
             F     S  ++ LE N 
Sbjct: 826 IQFAL--ASDVLYVLEANP 842


>gi|315127886|ref|YP_004069889.1| acetyl-CoA carboxylase biotin carboxylase subunit
           [Pseudoalteromonas sp. SM9913]
 gi|315016400|gb|ADT69738.1| acetyl-CoA carboxylase biotin carboxylase subunit
           [Pseudoalteromonas sp. SM9913]
          Length = 446

 Score = 70.5 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 80/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+      +E     +         L  DK+ + + +   GVP  P    
Sbjct: 77  AIHPGYGFLAENADFADQVEQSGFVFIGPRGDTIRLMGDKVSAIEAMRKAGVPCVPGSDG 136

Query: 111 -ILVNRF-TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGD 164
            +  ++   M     I  P +IK   GG   G+ V++ +  +   +     ++  +    
Sbjct: 137 PVSDDKERNMQIAKRIGYPVIIKAAGGGGGRGMRVVRNEAELINSIALTQQEAKQFFGNS 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E++++    +   V+ D   +   +            K          PA  I  +
Sbjct: 197 MVYMEKFLENPRHIEVQVLADGQGNAVHLGERDCSMQRRHQK-----VVEEAPAPGITAE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + K +      A   IG RG    +FL+   + + +++E+N 
Sbjct: 252 VRKFIGERCTRACIEIGYRGAGTFEFLY--ENGEFYFIEMNT 291


>gi|301615335|ref|XP_002937132.1| PREDICTED: propionyl-CoA carboxylase alpha chain,
           mitochondrial-like [Xenopus (Silurana) tropicalis]
          Length = 710

 Score = 70.5 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 73/221 (33%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      L    + +      A     DK+ SK +  +  V   P    
Sbjct: 120 AVHPGYGFLSENKEFARRLAAESVTFIGPDTHAIQAMGDKIESKLLAKNAKVNTIPGFDG 179

Query: 112 LVNRFTMDS--QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL-----DLLQSSSWNHGD 164
           +V            I  P +IK   GG   G+ +   D+             +SS+   D
Sbjct: 180 VVKDADEAVRIAREIGYPVMIKASAGGGGKGMRIAWDDEETREGFRFSAQEAASSFG-DD 238

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           +LLIE+++D    +   V+ D   +   +   +        K             +  + 
Sbjct: 239 RLLIEKFIDNPRHIEIQVLADKHGNALWLNERECSIQRRNQK----VVEEAPSTFLDPET 294

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +   A    +A+        +FL D      F+LE+N 
Sbjct: 295 RRAMGEQAVALAKAVKYSSAGTVEFLVDSKKN-FFFLEMNT 334


>gi|225017616|ref|ZP_03706808.1| hypothetical protein CLOSTMETH_01545 [Clostridium methylpentosum
           DSM 5476]
 gi|224949581|gb|EEG30790.1| hypothetical protein CLOSTMETH_01545 [Clostridium methylpentosum
           DSM 5476]
          Length = 1067

 Score = 70.5 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 34/227 (14%), Positives = 89/227 (39%), Gaps = 19/227 (8%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTMDSQHLISPPYV 129
           L+ + +    +   +   + D+ R  +++  CG+P      V      + + + +  P +
Sbjct: 644 LQEMGVRILGTSADSIDAAEDRERFDELLEKCGIPRPAGTTVFTAEEAVKAANELEYPVL 703

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS--- 186
           ++P        +I+   D+ I   +   +S N  + +L+++Y+ G+E+    + D     
Sbjct: 704 LRPSYVLGGQNMIIAHSDKDIEEYMAIITSHNIENPVLVDKYMMGVEVEVDAICDGEDYL 763

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISR 245
           +      + ++  +S        +S  V P   +   I + +         A+  RG+  
Sbjct: 764 IPGIMEHIERAGVHS-------GDSISVYPCQNLSKSIRETIIDYTAKLALALDVRGLLN 816

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
             ++    + +V+ +E+N +   T     P ++   G    +L   +
Sbjct: 817 IQYVV--YNDEVYVIEVNPRSSRT----VPYISKVTGVPMVDLATKI 857



 Score = 56.3 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 46/286 (16%), Positives = 95/286 (33%), Gaps = 33/286 (11%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQIDVD---------------------RSVGLV 45
           G ++E + +   G     AL++ G +V  ++ +                      +V  +
Sbjct: 21  GQAAEFDYA---GTQACRALKEEGLEVVLVNSNPATIMTDKAMADHIYIEPLTLETVKRI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   KPD   + L G  G    +Q      L    +    +       + D+   K  + 
Sbjct: 78  IEIEKPDSLLSTLGGQTGLTLSMQLAKDGFLAEHGVKLLGARPETIDKAEDRQEFKDTME 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G P  PS +V      +   + I  P +I+P       G  + +  +           
Sbjct: 138 KIGQPCIPSKVVENIDDAVAFANEIGLPLIIRPAFTLGGTGGGIAETMEEFIEIATNGLR 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   Q+L+E+ + G  E+   V+ D+  +V  I V   +       ++  +        
Sbjct: 198 LSPITQILVEKCISGWKEIEFEVIRDSKGNV--ITVCSMENVDPVGVHTGDSIVVAPAVT 255

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +    Y+ ++  A      +   G     F   P S +   +E+N 
Sbjct: 256 LTDKEYQMLRTAALDIISELEVEGGCNCQFALHPESFEYAVIEVNP 301


>gi|73669860|ref|YP_305875.1| carbamoyl phosphate synthase large subunit [Methanosarcina barkeri
           str. Fusaro]
 gi|121697017|sp|Q469Z7|CARB_METBF RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|72397022|gb|AAZ71295.1| carbamoyl-phosphate synthase large subunit [Methanosarcina barkeri
           str. Fusaro]
          Length = 1071

 Score = 70.5 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 45/307 (14%), Positives = 102/307 (33%), Gaps = 53/307 (17%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLV------- 68
           AL + G +   I         D D S  L    L  +   NV+      DG++       
Sbjct: 575 ALREEGIETHIINNNPETVSTDFDTSDKLFFEPLTLEYVMNVIE-REKPDGVLVQFGGQT 633

Query: 69  ---------QAILEL--LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--SILVNR 115
                    Q +     L      +      L+ D+ +   ++   GVP         ++
Sbjct: 634 SVNLAIPLKQELKRRTDLNTVILGTDPDDMDLAEDREKFYILMKELGVPQPEGGYATSHK 693

Query: 116 FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175
             ++    I  P +++P        + ++  +  +   + ++   +H   +LI+ +++  
Sbjct: 694 EAIEVAKRIGFPVLVRPSYVLGGRAMEIVYDEIDLERYMKEAVRVSHEHPILIDDFLEAA 753

Query: 176 EL----TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
                       D  +      + ++  +S        ++  + P  +  ++  +V+   
Sbjct: 754 SEIDVDAVCDQKDVIIGAIMEHIEEAGVHS------GDSACVIPPQSLSPEVLDQVRDYT 807

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSI---FPEMAAY--A 281
                A+  +G+   +        KV+ LE N       P     S+     ++AA   A
Sbjct: 808 RKIALALKVKGL--INIQMAEKCGKVYVLEANPRSSRTIP-FVSKSVGIPLAKIAAKVIA 864

Query: 282 GYSFREL 288
           G+S + L
Sbjct: 865 GHSLKSL 871



 Score = 55.5 bits (133), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 42/275 (15%), Positives = 95/275 (34%), Gaps = 32/275 (11%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     +L++ G KV  +         D +            + V  ++   +PD    
Sbjct: 29  SGSQACRSLKEEGIKVVLVNSNPATIMTDPEMADSVYIEPLDAKIVEKIIEKERPDGIIA 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G  G +   +     + E   +    + + A   + D+   K+ +   G  V  S  
Sbjct: 89  GIGGQTGLNITSELAEKGVFEKYGVEILGTPVEAIKNTEDRELFKETMLRIGEKVPLSRA 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           VN  +   D    +  P +++P       G  + +  + +     +    +  +Q+LIE+
Sbjct: 149 VNSLKEAEDVVDELGLPLIVRPAYTLGGAGGGIARTKEELLEITERGLRRSRINQVLIEE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
            V G  E+   VM D +   T I +   +       ++  ++       +    ++ ++ 
Sbjct: 209 SVLGWAEIEYEVMRDEND--TCIVICNMENIDPMGVHTGESAVVAPSQTLSDAEHQMLRS 266

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +    +A+   G     +       +V   E+N 
Sbjct: 267 ASIKIIRALKIEGGCNIQYALKEGDYRVV--EVNP 299


>gi|254486053|ref|ZP_05099258.1| carboxylase/ CoA carboxylase [Roseobacter sp. GAI101]
 gi|214042922|gb|EEB83560.1| carboxylase/ CoA carboxylase [Roseobacter sp. GAI101]
          Length = 1075

 Score = 70.5 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 35/199 (17%), Positives = 71/199 (35%), Gaps = 17/199 (8%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD----SQHLISPPYVIK 131
            + +         L  DK+ ++ +  + GVPV     +   + D     +     P +IK
Sbjct: 98  GLVFVGPDAATLRLQGDKVSARTLAENAGVPVLRGSDLLETSADLHAFFEAQGGAPLMIK 157

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQLLIEQYVDG-IELTCGVMGDAS 186
            + GG   G+ +++    I     Q+ +        DQL  E+++     +   ++GD  
Sbjct: 158 AVNGGGGRGMRMVQDAGEIDAAFAQARAETLSAFGDDQLYAERFLQSVRHIEVQIVGDG- 216

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISR 245
                  V         ++        + PA  +       + + A    +A G RG+  
Sbjct: 217 -----RNVTHLWERDCSVQRRHQKVIELAPAPNLDDATRDALLKAAVAIGEACGYRGLGT 271

Query: 246 SDFLFDPLSRKVFWLEINV 264
            +FL    S   +++E N 
Sbjct: 272 VEFLV-EDSGAFYFIETNP 289


>gi|116872788|ref|YP_849569.1| acetyl-CoA carboxylase biotin carboxylase subunit [Listeria
           welshimeri serovar 6b str. SLCC5334]
 gi|116741666|emb|CAK20790.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Listeria
           welshimeri serovar 6b str. SLCC5334]
          Length = 454

 Score = 70.5 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 81/220 (36%), Gaps = 16/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     + E   I +      A +    K  +++ +   GVP+ P    
Sbjct: 77  AIHPGYGFLAENADFAELCEDCNITFIGPSASAISQMGTKDVARETMRKAGVPIVPGSQG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
            +            I  P +IK   GG   GI V + ++ +   +     ++ +      
Sbjct: 137 IVADVEDGKKIAKKIGYPVIIKATAGGGGKGIRVAETEEKLISGIQTTQQEAEAAFGDPG 196

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+Y+     +   V+ D   +V  +            K    + +   PA I     
Sbjct: 197 VYLEKYIQDFRHVEIQVLADNHGNVIHLGERDCSIQRRLQKLIEESPS---PA-IDEKTR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +++ + A  A +A+   G    +F++D      +++E+N 
Sbjct: 253 QKMGKAAVKAAKAVNYSGAGTIEFIYDHHENNFYFMEMNT 292


>gi|78222036|ref|YP_383783.1| pyruvate carboxylase [Geobacter metallireducens GS-15]
 gi|78193291|gb|ABB31058.1| Pyruvate carboxylase [Geobacter metallireducens GS-15]
          Length = 1148

 Score = 70.5 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 49/278 (17%), Positives = 97/278 (34%), Gaps = 28/278 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLA-HLKPDLAFNVLH 59
           +A+     S E ++SL   KA  + L   G     ID    +  ++A   K D+  + +H
Sbjct: 33  VAI----YSEEDKLSLHRYKADEAYLVGKGKN--PIDAYLGIDEIIAIAKKYDV--DAIH 84

Query: 60  GNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----IL 112
             +G   E+       E   I +            DK+ +++V  + GV   P     I 
Sbjct: 85  PGYGFLSENAEFAEKCEASGIAFIGPTAEMQRALGDKVSARKVAMAAGVTTVPGTEDPIE 144

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSWNHGDQLLI 168
                +        P +IK   GG   G+ V +  + +         ++ +      + +
Sbjct: 145 HEEEALIFAKNYGYPIIIKAAAGGGGRGMRVARTKKELLEGLVAARSEAKAAFGNPAVFL 204

Query: 169 EQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKE 226
           E+Y++    +   V+GD   ++              ++          PA  +  +  + 
Sbjct: 205 ERYIENPKHIEVQVLGDMHGNLV-----HFFERDCSIQRRHQKVVEFAPALCLSQETREA 259

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +   A      +G R     +FL D      F++E+N 
Sbjct: 260 ICAAALKIAGQVGYRNAGTVEFLLDQEGN-FFFIEMNP 296


>gi|83765977|dbj|BAE56120.1| unnamed protein product [Aspergillus oryzae]
          Length = 684

 Score = 70.5 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 30/239 (12%), Positives = 70/239 (29%), Gaps = 17/239 (7%)

Query: 38  VDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSK 97
           +D    + LA      A    +G   E+      +    + +             K  ++
Sbjct: 62  IDGDQIIKLAKRNHVDAIIPGYGFLSENADFARAIAKAGMVFAGPSPECIEAFGLKHTAR 121

Query: 98  QVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153
            + +  GVP+ P     +      +     +  P ++K   GG  +G++    +  +   
Sbjct: 122 DLATKAGVPIVPGSTGLVTSEEDAVKVAKDLGFPVMLKATAGGGGMGLLTCSSEDEVRES 181

Query: 154 LLQ-----SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS 208
                    + + +    +   Y     +   V G+       I   +        K   
Sbjct: 182 FATVRSRGEALFKNAGLFIERYYPSSHHIEVQVFGNGDGKAIAIGERECSIQRRHQK--- 238

Query: 209 LNSTHVLPAKI---PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
                  P+        + + +   A    ++I        ++L D  +   F+LE+N 
Sbjct: 239 --IIEECPSPFVTRNPGLRESLGDAAVRLAESIKYGSAGTIEYLVDDETGAFFFLEMNT 295


>gi|257081570|ref|ZP_05575931.1| acetyl-CoA carboxylase [Enterococcus faecalis E1Sol]
 gi|256989600|gb|EEU76902.1| acetyl-CoA carboxylase [Enterococcus faecalis E1Sol]
          Length = 456

 Score = 70.5 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 75/220 (34%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  FG   E+    ++ E   I +            +K+ ++Q++    VPV P    
Sbjct: 77  AIHPGFGFLSENSQFASMCEECNITFIGPKAETIDAMGNKINARQLMQKAKVPVIPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL----DLLQSSSWNHGDQ 165
            I      +     I  P ++K   GG   GI  +   + +P        ++ +    D 
Sbjct: 137 VIDSVEEALTIAEKIGYPVMLKAAAGGGGKGIRKVLSKEELPKHFTSAQQEAKAAFGNDD 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+ +     +   ++GD    V  +            K             I  +  
Sbjct: 197 MYLEKIIYPARHIEVQILGDQYGHVIHLGERDCSLQRNNQKVL----EESPSIAISEEKR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +   A  A QA+        +FL DP     +++E+N 
Sbjct: 253 QMLGETAVRAAQAVHYENAGTIEFLMDPA-GDFYFMEMNT 291


>gi|240275452|gb|EER38966.1| carbamoyl-phosphate synthase [Ajellomyces capsulatus H143]
          Length = 1182

 Score = 70.5 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 55/291 (18%), Positives = 107/291 (36%), Gaps = 41/291 (14%)

Query: 6   GGIS----SEREVSLSSGKACASALEDAGFK--------------------VSQIDVDRS 41
           GG+S     E + S   G     AL++AG +                    V  + V   
Sbjct: 114 GGLSIGQAGEFDYS---GSQALKALKEAGVESVLINPNIATIQTDHKLADEVYYLPVTPE 170

Query: 42  -VGLVLAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRS 96
            V  V+   +PD  F    G    +  VQ     + +   +    + I    +S D+   
Sbjct: 171 YVTHVIEREQPDGIFLTFGGQTALNLGVQMNRMGVFDRYGVKVLGTSIRTLEVSEDRDLF 230

Query: 97  KQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154
            + ++   +P+  S+ VN     +++   I  P +++       LG       + +    
Sbjct: 231 AKALNEINIPIAESVAVNSVDEALEAAEKIGYPIIVRSAYALGGLGSGFANNAEELK--N 288

Query: 155 LQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTH 213
           L S S     Q+L+E+ + G  E+   V+ DA+ +   I V   + +   L   + +S  
Sbjct: 289 LSSRSLTLAPQILVEKSLKGWKEVEYEVVRDAANN--CITVCNMENFD-PLGIHTGDSIV 345

Query: 214 VLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
           V P++ +  + Y  ++  A    + +G  G     +   P       +E+N
Sbjct: 346 VAPSQTLSDEEYHMLRTAAIKIVRHLGVVGECNVQYALQPDGLDYRVIEVN 396



 Score = 55.5 bits (133), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 27/168 (16%), Positives = 61/168 (36%), Gaps = 6/168 (3%)

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVI 130
           E        +       + D+ +  Q++ S GV       ++           +  P ++
Sbjct: 744 ETGGAKVLGTDPKDIDKAEDRHKFSQILDSIGVDQPAWKELSSVAEAEAFADSVGYPVLV 803

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190
           +P    S   + VI     +   LL +S+ +    ++I ++++G +    +  DA     
Sbjct: 804 RPSYVLSGAAMSVIHSRDELKDKLLSASAVSPDHPVVITKFIEGAQE---IDVDAVASAG 860

Query: 191 EIAVPKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQA 237
           ++ V     +       S ++T V  P  +   I   V+ +A    +A
Sbjct: 861 KLIVHAVSEHVEAAGVHSGDATLVLPPVNLEAPIMARVKEIAEKVAKA 908


>gi|225561845|gb|EEH10125.1| carbamoyl-phosphate synthase [Ajellomyces capsulatus G186AR]
          Length = 1182

 Score = 70.5 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 55/291 (18%), Positives = 107/291 (36%), Gaps = 41/291 (14%)

Query: 6   GGIS----SEREVSLSSGKACASALEDAGFK--------------------VSQIDVDRS 41
           GG+S     E + S   G     AL++AG +                    V  + V   
Sbjct: 114 GGLSIGQAGEFDYS---GSQALKALKEAGVESVLINPNIATIQTDHKLADEVYYLPVTPE 170

Query: 42  -VGLVLAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRS 96
            V  V+   +PD  F    G    +  VQ     + +   +    + I    +S D+   
Sbjct: 171 YVTHVIEREQPDGIFLTFGGQTALNLGVQMNRMGVFDRYGVKVLGTSIRTLEVSEDRDLF 230

Query: 97  KQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154
            + ++   +P+  S+ VN     +++   I  P +++       LG       + +    
Sbjct: 231 AKALNEINIPIAESVAVNSVDEALEAAEKIGYPIIVRSAYALGGLGSGFANNAEELK--N 288

Query: 155 LQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTH 213
           L S S     Q+L+E+ + G  E+   V+ DA+ +   I V   + +   L   + +S  
Sbjct: 289 LSSRSLTLAPQILVEKSLKGWKEVEYEVVRDAANN--CITVCNMENFD-PLGIHTGDSIV 345

Query: 214 VLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
           V P++ +  + Y  ++  A    + +G  G     +   P       +E+N
Sbjct: 346 VAPSQTLSDEEYHMLRTAAIKIVRHLGVVGECNVQYALQPDGLDYRVIEVN 396



 Score = 56.7 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 27/168 (16%), Positives = 61/168 (36%), Gaps = 6/168 (3%)

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVI 130
           E        +       + D+ +  Q++ S GV       ++           +  P ++
Sbjct: 744 ETGGAKVLGTDPKDIDKAEDRHKFSQILDSIGVDQPAWKELSSVAEAEAFADSVGYPVLV 803

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190
           +P    S   + VI     +   LL +S+ +    ++I ++++G +    +  DA     
Sbjct: 804 RPSYVLSGAAMSVIHSRDELKEKLLSASAVSPDHPVVITKFIEGAQE---IDVDAVASAG 860

Query: 191 EIAVPKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQA 237
           ++ V     +       S ++T V  P  +   I   V+ +A    +A
Sbjct: 861 KLIVHAVSEHVEAAGVHSGDATLVLPPVNLEAPIMARVKEIAEKVAKA 908


>gi|238484153|ref|XP_002373315.1| urea amidolyase, putative [Aspergillus flavus NRRL3357]
 gi|220701365|gb|EED57703.1| urea amidolyase, putative [Aspergillus flavus NRRL3357]
          Length = 684

 Score = 70.5 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 30/239 (12%), Positives = 70/239 (29%), Gaps = 17/239 (7%)

Query: 38  VDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSK 97
           +D    + LA      A    +G   E+      +    + +             K  ++
Sbjct: 62  IDGDQIIKLAKRNHVDAIIPGYGFLSENADFARAIAKAGMVFAGPSPECIEAFGLKHTAR 121

Query: 98  QVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153
            + +  GVP+ P     +      +     +  P ++K   GG  +G++    +  +   
Sbjct: 122 DLATKAGVPIVPGSTGLVTSEEDAVKVAKDLGFPVMLKATAGGGGMGLLTCSSEDEVRES 181

Query: 154 LLQ-----SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS 208
                    + + +    +   Y     +   V G+       I   +        K   
Sbjct: 182 FATVRSRGEALFKNAGLFIERYYPSSHHIEVQVFGNGDGKAIAIGERECSIQRRHQK--- 238

Query: 209 LNSTHVLPAKI---PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
                  P+        + + +   A    ++I        ++L D  +   F+LE+N 
Sbjct: 239 --IIEECPSPFITRNPGLRESLGDAAVRLAESIKYGSAGTIEYLVDDETGAFFFLEMNT 295


>gi|254189518|ref|ZP_04896028.1| acetyl-CoA carboxylase, biotin carboxylase [Burkholderia
           pseudomallei Pasteur 52237]
 gi|157937196|gb|EDO92866.1| acetyl-CoA carboxylase, biotin carboxylase [Burkholderia
           pseudomallei Pasteur 52237]
          Length = 484

 Score = 70.5 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 76/220 (34%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+    A +E   + +        A   DK R+++     GVP  P    
Sbjct: 95  AIHPGYGFLSENADFAAQVEAAGLIFVGPPARVIATMGDKARARETARRAGVPTVPGSEG 154

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK----DQSIPLDLLQSSSWNHGDQ 165
            +       +    I  P +IK   GG   GI V          +PL   ++ +      
Sbjct: 155 VVASLDGAHEVAARIGYPVMIKAAAGGGGRGIRVAHDAAQLAAQLPLAQREAQAAFGDGG 214

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+++     +   ++GD   +V  +   +        K             +   + 
Sbjct: 215 VYLERFIARARHIEVQILGDGE-NVIHLFERECSLQRRRQKIL----EEAPSPSLTPALR 269

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +   A    + +  RG    ++LFD    + +++E+N 
Sbjct: 270 DTLCASATRLARQVSYRGAGTLEYLFDDARGEFYFIEMNT 309


>gi|156717908|ref|NP_001096495.1| pyruvate carboxylase, gene 2 [Xenopus (Silurana) tropicalis]
 gi|134254218|gb|AAI35599.1| LOC100125118 protein [Xenopus (Silurana) tropicalis]
          Length = 401

 Score = 70.5 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 34/233 (14%), Positives = 77/233 (33%), Gaps = 17/233 (7%)

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
            +  V    + D      +G   E            + +            DK+ ++ + 
Sbjct: 101 DIIKVAKENEVDAVHPG-YGFLSERSDFAQACTDAGVRFIGPSPEVVRKMGDKVEARAIA 159

Query: 101 SSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL---- 152
            S GVPV P     I       +  +    P + K   GG   G+ V++  + +      
Sbjct: 160 ISAGVPVVPGTDSPISCLTEAKEFSNKYGFPIIFKAAYGGGGRGMRVVRSYEELEENYTR 219

Query: 153 DLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
              ++ S      L +E++++    +   ++GD   +V  +            K      
Sbjct: 220 AYSEALSAFGNGALFVEKFIEKPRHIEVQILGDKFGNVIHLYERDCSIQRRHQK-----V 274

Query: 212 THVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
             + P A++   +   +   +    + +G       +FL D   +  +++E+N
Sbjct: 275 VEIAPAAQLDPQLRDRLTHDSVKLAKQVGYENAGTVEFLVDKHGKH-YFIEVN 326


>gi|321260368|ref|XP_003194904.1| pyruvate carboxylase [Cryptococcus gattii WM276]
 gi|317461376|gb|ADV23117.1| Pyruvate carboxylase, putative [Cryptococcus gattii WM276]
          Length = 1149

 Score = 70.5 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 80/221 (36%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
           ++H  +G   E+      +E   I +            DK +++ +    GVPV P    
Sbjct: 130 MIHPGYGFLSENAEFAKKVEDAGIAFIGPRPETIDALGDKTKARTLAIKTGVPVVPGTPG 189

Query: 114 NRFTMDSQHLI----SPPYVIKPLKGGSSLGIIVIKK----DQSIPLDLLQSSSWNHGDQ 165
              + D           P +IK   GG   G+ V++      +S    + ++ S      
Sbjct: 190 PVESYDKAAAFIEKYGFPVIIKAAMGGGGRGMRVVRDQESFKESFERAVSEAKSAFGDGT 249

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           + IE+++D    +   ++ D   +               ++        V PA  +   +
Sbjct: 250 VFIERFLDRPRHIEVQLLADGEGNCV-----HLFERDCSVQRRHQKVVEVAPAPHLEESV 304

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +   A    +A+  R    ++FL D  +R  +++EIN 
Sbjct: 305 RQAILSDALKLAEAVKYRNAGTAEFLVDQQNRH-YFIEINP 344


>gi|300710620|ref|YP_003736434.1| carbamoyl phosphate synthase large subunit [Halalkalicoccus
           jeotgali B3]
 gi|299124303|gb|ADJ14642.1| carbamoyl phosphate synthase large subunit [Halalkalicoccus
           jeotgali B3]
          Length = 1045

 Score = 70.5 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 46/303 (15%), Positives = 107/303 (35%), Gaps = 39/303 (12%)

Query: 24  SALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLV-----Q 69
            AL + G +   +         D D S GL    +  +   +V+    G DG +     Q
Sbjct: 593 QALRENGIEAHVVNNNPETVSTDYDTSDGLFFEPITAEEVADVIEAT-GADGAMIQFGGQ 651

Query: 70  AILEL------------LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--R 115
             +++            L+     + + A  L+ D+ R   ++   G+            
Sbjct: 652 TSVDIGEPLEQEIERRGLDCEIMGTAVDAMDLAEDRDRFNGLMDELGIAQPEGGTATSEA 711

Query: 116 FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-G 174
             +D  H I  P +++P        + V+  D  +   + ++        +L++++++ G
Sbjct: 712 EALDLAHEIGYPVLVRPSYVLGGRAMEVVHSDSELEEYIEEAVRVAPDKPILVDKFLEGG 771

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
           +EL    + D    +    +   +       +S  ++  + P  +  D    ++ +    
Sbjct: 772 VELDVDAVSDGERVLIGGIMEHVESAGV---HSGDSACMIPPRWLEADAMGRIREVVEQI 828

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            +A+   G+   +        +V+ LE N +   T     P ++   G    +L   ++ 
Sbjct: 829 ARALDTVGL--LNVQLAVYEGEVYVLEANPRSSRT----VPFVSKATGVPIAKLAARVMA 882

Query: 295 DAS 297
            AS
Sbjct: 883 GAS 885



 Score = 58.6 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 46/292 (15%), Positives = 107/292 (36%), Gaps = 41/292 (14%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQID---------------------VDRSVGLV 45
           G ++E + S   G     AL++ G +V  ++                        ++  +
Sbjct: 25  GQAAEFDYS---GAQACRALQEEGVRVVLVNSNPATIMTDPEMADKVYIEPITTEAIAEI 81

Query: 46  LAHLKPDLAFNVLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   +PD     L G  G +       + +LE  ++    + +     + D+ + ++ + 
Sbjct: 82  IEKERPDGVIAGLGGQTGLNVTAELAEEGVLEEFDVEIMGTPLETIYATEDRDQFRERME 141

Query: 102 SCGVPVCPSILVN---RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS 158
             G P+  S  +          + +   P +++        G  V+++   +   + +  
Sbjct: 142 EIGQPMPRSRTIESVGEVEDAVEAVGGLPVIMRTTYTLGGSGSGVVEEMDELKESVRRGL 201

Query: 159 SWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKS-DFYSYELKYSSLNSTHVLP 216
             +   ++LI + + G +EL   VM DA      I   ++ D            ST V P
Sbjct: 202 RLSRNGEVLITESISGWVELEYEVMRDADDSCIIICNMENIDPMGIHT----GESTVVTP 257

Query: 217 AK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL---SRKVFWLEINV 264
           ++ IP + ++E++  A    + +G +G     F +        +   +E+N 
Sbjct: 258 SQVIPDEGHQEMRSAALEVIRDLGIQGGCNIQFAWHDDGTPGGEYRVVEVNP 309


>gi|281491131|ref|YP_003353111.1| pyruvate carboxylase [Lactococcus lactis subsp. lactis KF147]
 gi|281374881|gb|ADA64400.1| Pyruvate carboxylase [Lactococcus lactis subsp. lactis KF147]
          Length = 1137

 Score = 70.5 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 28/167 (16%), Positives = 63/167 (37%), Gaps = 13/167 (7%)

Query: 104 GVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
           G+P     +     ++       P +IK   GG   G+ V + D  +     ++ S   G
Sbjct: 130 GIPGTNGAVDIDGALEFAKTYGYPVMIKAALGGGGRGMRVARNDAEMHDGYARAKSEAIG 189

Query: 164 ----DQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA- 217
                ++ +E+Y++    +   ++GD+  ++              ++  +     + PA 
Sbjct: 190 AFGSGEIYVEKYIENPKHIEVQILGDSHGNII-----HLHERDCSVQRRNQKVIEIAPAV 244

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + LD   E+   A    + +G       +FL      K +++E+N 
Sbjct: 245 GLSLDFRNEICEAAVKLCKNVGYVNAGTVEFLV--KDDKFYFIEVNP 289


>gi|163868591|ref|YP_001609800.1| hypothetical protein Btr_1449 [Bartonella tribocorum CIP 105476]
 gi|161018247|emb|CAK01805.1| hypothetical protein BT_1449 [Bartonella tribocorum CIP 105476]
          Length = 421

 Score = 70.5 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 45/226 (19%), Positives = 91/226 (40%), Gaps = 29/226 (12%)

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILV-NRFTMDSQHLISPPYVIKPLKGGSSLGII 142
              +AL+ +K   +Q  S  G+     + + N   +   H +  P VIKP+ G +S G++
Sbjct: 102 PEVAALTRNKYLMRQAFSKAGLRTPRFLYIDNPEDLSQTHGLDYPLVIKPVSGWASTGVM 161

Query: 143 VIKKDQSIPLDLLQS---------SSWNHGDQ---LLIEQYVDGIELTCGVMGDAS---- 186
           + K    +P  L+++         + +N  ++   L++EQY+ G E       D +    
Sbjct: 162 LAKNSAELP-GLIKAVWNVQHKDMARFNDKNKPIGLVVEQYLPGKEFVVECFVDTAGVHV 220

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR-GISR 245
           L V +   P+  ++          + +         +   +  +A    +A+G   G + 
Sbjct: 221 LAVGDKGQPEGPWF--------EETIYRQRCDRDDPLIIALCEVACSGVKALGINMGAAH 272

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
            +   D      + +EI  + G + VS F  +    G SF +L + 
Sbjct: 273 VELRLDAH-NLPYIIEIGARIGGSGVSHF-IVEQGTGVSFAKLCMK 316


>gi|322689606|ref|YP_004209340.1| carbamoyl phosphate synthase large subunit [Bifidobacterium longum
           subsp. infantis 157F]
 gi|320460942|dbj|BAJ71562.1| carbamoyl phosphate synthase large subunit [Bifidobacterium longum
           subsp. infantis 157F]
          Length = 1127

 Score = 70.5 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 45/288 (15%), Positives = 103/288 (35%), Gaps = 36/288 (12%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQIDVDRS---------------------VGLV 45
           G ++E + S   G      L + G +V  ++ + +                     +  +
Sbjct: 21  GQAAEFDYS---GTQACRVLREEGIRVILVNSNPATIMTDPEMADATYIEPIATPILEQI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +A  +PD     L G    +  +      +LE   +    + + A     D+   K+VV 
Sbjct: 78  IAKERPDALLPTLGGQTALNAAMALGEAGVLEKYNVELIGASLEAIDRGEDRELFKKVVD 137

Query: 102 SCGVPVCPSILVNRFTMDS--QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G     S + +              P V++P      LG  +   ++ +         
Sbjct: 138 EAGAESARSDIAHSIEEVDKIAEKFGYPLVVRPSFTMGGLGSGIAHNEEELHRIAGAGIH 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
           ++  D++LIE+ ++G  E    +M D + +V  +   ++      +   + +S  V P  
Sbjct: 198 YSPTDEVLIEEGIEGWKEFELELMRDRNDNVVVVCPIENVD---PVGVHTGDSITVAPCF 254

Query: 219 -IPLDIYKEVQRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
            +    Y++++ +     + +G   G     F   P + ++  +E+N 
Sbjct: 255 TLTDREYQKLRDIGIAIIRGVGVDTGGCNIQFAVHPDTGRIIVIEMNP 302



 Score = 51.3 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/233 (13%), Positives = 76/233 (32%), Gaps = 29/233 (12%)

Query: 67  LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTMDSQHLI 124
            + A L+   +P   +   +  L+ ++    +V+    +        L      ++ H I
Sbjct: 651 SLAARLKSAGVPILGTTPESIDLAENRELFGEVLKKAEMNAPRYGTALSLEEAKEAAHRI 710

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
             P +++P       G+ ++  D+ +   + ++ +    D +     V G   +  ++  
Sbjct: 711 GYPVLVRPSYVLGGRGMEIVYDDKQLNKYVDRALAEAKADTV-----VSGRLPSPLLIDK 765

Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK--------------IPLDIYKEVQRL 230
              D  EI V     +  E  Y      HV  A               +  D  + ++  
Sbjct: 766 FLQDAIEIDV--DALFDGEELYIGGIMEHVEEAGVHSGDAACTLPPSTLSDDQIRRLREG 823

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283
            +   +    +G+    + F      ++ +E N +   T     P  +   G 
Sbjct: 824 TYAIAKGCHVQGLINVQYAFMA--NTLYVIEANPRASRT----VPFASKATGV 870


>gi|304409876|ref|ZP_07391495.1| Carbamoyl-phosphate synthase L chain ATP-binding [Shewanella
           baltica OS183]
 gi|307302417|ref|ZP_07582175.1| Carbamoyl-phosphate synthase L chain ATP-binding [Shewanella
           baltica BA175]
 gi|304351285|gb|EFM15684.1| Carbamoyl-phosphate synthase L chain ATP-binding [Shewanella
           baltica OS183]
 gi|306914455|gb|EFN44876.1| Carbamoyl-phosphate synthase L chain ATP-binding [Shewanella
           baltica BA175]
          Length = 686

 Score = 70.5 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 43/222 (19%), Positives = 81/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       E   I +   G  A      K  +K ++++  VP+ P    
Sbjct: 82  AIHPGYGFLSENADFARKCEAAGIAFVGPGSDAIDAMGSKSAAKSIMTAANVPLVPGYHG 141

Query: 114 NRFTM----DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGD 164
           +  T          I  P +IK   GG   G+ +++ +  I   +       +SS+   D
Sbjct: 142 DDQTDATLKAEALKIGFPMLIKAAYGGGGKGMRIVENEGEIMEAVNSARREAASSFG-ND 200

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
           +LL+E+Y+     +   V  D   +   ++           K          PA  +   
Sbjct: 201 KLLMERYLRQPRHVEVQVFADTFGNAIYLSDRDCSIQRRHQK-----VVEEAPAPGLSDA 255

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +  ++   A  A +AI   G    +FL D      +++E+N 
Sbjct: 256 LRAQMGDAAVAAAKAIDYVGAGTVEFLLDT-DNSFYFMEMNT 296


>gi|206601579|gb|EDZ38062.1| Carbamoyl-phosphate synthase, large subunit [Leptospirillum sp.
           Group II '5-way CG']
          Length = 1080

 Score = 70.5 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 50/278 (17%), Positives = 100/278 (35%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G++VS +         D               +V  VL   +PD    
Sbjct: 29  SGTQAVRALKEEGYRVSLVNSNPATIMTDPQLSDATYMVPLTVEAVTRVLEKERPDAILP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  V    + +L+ L I    + +     + D+   K+ + S G+    S +
Sbjct: 89  TMGGQTALNLAVELSDRGVLKRLGIELIGTSVETIRKAEDRGLFKKAMESIGLASPRSFV 148

Query: 113 VNRFTMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +        L  +S P +I+P       G  V+   +     +      +   ++L+E+
Sbjct: 149 AHSMAEARSALGELSFPIMIRPSFTLGGSGGGVVFNLEEFEQRVQVGLEMSPVREVLVEE 208

Query: 171 YVDG-IELTCGVMGDASL-DVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEV 227
            + G  E    V+ D +   +   ++   D           +S  V P   +P   Y+ +
Sbjct: 209 SLLGWKEFELEVVRDKADNAIIVCSIENLDPMGVHT----GDSITVAPQMTLPDREYQYL 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + +G   G S   F   P + +V  +E+N 
Sbjct: 265 RNASIAILREVGVETGGSNVQFAVHPETGRVVVIEMNP 302



 Score = 65.9 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 47/229 (20%), Positives = 91/229 (39%), Gaps = 12/229 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--FTMDSQHLISPPYV 129
           L    IP   +    + L+ D+ R + V+   G+    S L +    T      I  P +
Sbjct: 654 LAEAGIPILGTSPDMTDLAEDRERFRAVIEKLGLRQPASALAHTIGETAGLVREIGFPVL 713

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           ++P        + V+  ++ +   L +  S +    LLI+ ++ G      V  DA  D 
Sbjct: 714 VRPSYVLGGEAMEVLFDEEGLDEYLKRVQSLDFRFPLLIDSFI-GQATEVDV--DALCDQ 770

Query: 190 TEIAVPKSDFYSYELK-YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           TE+ V     +  E   +S  +S  + P  +  D+  E++        A+G RG+    F
Sbjct: 771 TEVFVAGILEHIEEAGIHSGDSSCFLPPMSLSADVLSEIRHQTRQLGLALGVRGLMNIQF 830

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
                +  V+ LE+N +   T     P ++   G    ++ + ++  A+
Sbjct: 831 AV--QNETVYVLEVNPRASRT----VPFVSKSIGIPLAKMAMRILLGAT 873


>gi|323449008|gb|EGB04900.1| hypothetical protein AURANDRAFT_31774 [Aureococcus anophagefferens]
          Length = 336

 Score = 70.5 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 38/197 (19%), Positives = 72/197 (36%), Gaps = 12/197 (6%)

Query: 71  ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQHLISPPY 128
           + E L +P       A   + DK +++  + + G+P      V        +   +  P 
Sbjct: 19  LAEALGLP--GPSSKAVDTARDKHKTRGAMRAAGLPSPECFKVECADDLAAAAQKVGFPA 76

Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-WNHGDQLLIEQYVDGIELTCGVMGDASL 187
           V+KPL G +SLG+  +  +  +     +     +     L E+Y+DG E+   V+     
Sbjct: 77  VLKPLNGAASLGVKKVASENELKRSYDEVRKEMDETVDFLFEEYLDGPEVDVDVVMARGR 136

Query: 188 DVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR-GISRS 246
                 V          +     +  + P+ +       +++LA  A  A G   G+   
Sbjct: 137 PAYAKVVDNGPT----AEPYFAETWGLCPSLLKEADQAALEQLAVDALAACGFEVGVFHV 192

Query: 247 DFLFDPLSRKVFWLEIN 263
           +      SR    +EIN
Sbjct: 193 ECKLT--SRGPRLIEIN 207


>gi|220912753|ref|YP_002488062.1| carbamoyl phosphate synthase large subunit [Arthrobacter
           chlorophenolicus A6]
 gi|254813554|sp|B8H8U5|CARB_ARTCA RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|219859631|gb|ACL39973.1| carbamoyl-phosphate synthase, large subunit [Arthrobacter
           chlorophenolicus A6]
          Length = 1109

 Score = 70.5 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 52/288 (18%), Positives = 112/288 (38%), Gaps = 36/288 (12%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI---------DVD------------RSVGLV 45
           G ++E + S   G      L++ G +V  +         D +              V  +
Sbjct: 21  GQAAEFDYS---GTQALRVLKEEGLRVILVNSNPATIMTDPEFADATYIEPITPEVVEKI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +A  +PD     L G    +  +      +LE   +    + I A  L  D+ + K VV 
Sbjct: 78  IAKERPDAVLPTLGGQTALNTAIALDKNGVLEKYNVELIGANIAAIELGEDREKFKGVVE 137

Query: 102 SCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
            CG     S +++     +++   +  P V++P      LG  +   +  +   + Q   
Sbjct: 138 RCGAESARSHIIHTMDEALEAAKDLGYPMVVRPSFTMGGLGSGLAYNEDDLRRIVGQGLQ 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA- 217
           ++   ++L+E+ + G  E    +M D + +V  +   ++      +   + +S  V PA 
Sbjct: 198 YSPTSEVLLEESILGWKEYELEMMRDKNDNVVVVCSIENFD---PVGVHTGDSITVAPAL 254

Query: 218 KIPLDIYKEVQRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
            +    Y++++ ++    + +G   G     F  DP + +V  +E+N 
Sbjct: 255 TLTDREYQKLRDVSIAVIREVGVDTGGCNIQFAIDPATGRVVVIEMNP 302



 Score = 51.7 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/199 (14%), Positives = 74/199 (37%), Gaps = 14/199 (7%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--QHLISPPYV 129
           L    +P   +   A  L+  +    +V+   G+    +     F         I  P +
Sbjct: 652 LADAGVPILGTSPEAIDLAEHRGAFSRVLDKAGLVSPKNGTAVSFEDAKKIADEIGYPVL 711

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDAS-- 186
           ++P       G+ ++  + ++   +  ++       +LI++++ D +E+    + D +  
Sbjct: 712 VRPSYVLGGRGMEIVYDEPNLSRYIANATEITPDHPVLIDRFLEDAVEIDVDALFDGTDM 771

Query: 187 -LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
            L      + ++  +S        ++  + P  +  ++ + V+       + +G RG+  
Sbjct: 772 YLGGIMEHIEEAGIHS------GDSACVLPPITLGSNVVERVRTATRAIAEGVGVRGLIN 825

Query: 246 SDFLFDPLSRKVFWLEINV 264
             F     S  ++ LE N 
Sbjct: 826 IQFAL--ASDVLYVLEANP 842


>gi|254462434|ref|ZP_05075850.1| carbamoyl-phosphate synthase, large subunit [Rhodobacterales
           bacterium HTCC2083]
 gi|206679023|gb|EDZ43510.1| carbamoyl-phosphate synthase, large subunit [Rhodobacteraceae
           bacterium HTCC2083]
          Length = 1101

 Score = 70.5 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 46/268 (17%), Positives = 95/268 (35%), Gaps = 35/268 (13%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAI---- 71
           AL DAG++   I         D D S  L    L  +    +L     EDG +  +    
Sbjct: 593 ALTDAGYETIMINCNPETVSTDYDTSDRLYFEPLTFEHVMEILRVEM-EDGTLHGVIVQF 651

Query: 72  -----------LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTM 118
                      LE   IP   +   A  L+ D+ R + +V+   +    + +   +   +
Sbjct: 652 GGQTPLKLANALEAEGIPILGTTPDAIDLAEDRERFQALVNQLNLKQPKNGIASTDAEAL 711

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IEL 177
                I  P VI+P        + +++    +   + ++   +    +L++ Y+ G +EL
Sbjct: 712 SIAEEIGFPLVIRPSYVLGGRAMEIVRDMAQLERYIAEAVVVSGDSPVLLDSYLSGAVEL 771

Query: 178 TC-GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
               +     + VT I             +S  ++  + P  +  D+ K ++        
Sbjct: 772 DVDALCDGKEVHVTGI----MQHIEEAGVHSGDSACSLPPYSLADDVIKRIEEQTHALAL 827

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINV 264
           A+   G+    F       +++ +E+N 
Sbjct: 828 ALNVVGLMNVQFAI--KDDEIYLIEVNP 853



 Score = 57.8 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 46/291 (15%), Positives = 96/291 (32%), Gaps = 48/291 (16%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D                V  ++   +PD    
Sbjct: 19  SGAQACKALREEGYRVILVNSNPATIMTDPGLADATYIEPITPEIVAKIIEKERPDALLP 78

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G  G +  +      +LE   +    +   A  ++ D+   ++ +   G+    + +
Sbjct: 79  TMGGQTGLNTSLALEEMGVLEKFNVEMIGAKREAIEMAEDRKLFREAMDRLGIENPKATI 138

Query: 113 VN---------------RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
           V                R  ++    I  P +I+P       G  V    +         
Sbjct: 139 VTAPTDENGKADLNEGVRLALEDLEQIGLPAIIRPAFTMGGTGGGVAYNREDYEFFCRSG 198

Query: 158 SSWNHGDQLLIEQYVDG-IELTCGVMGDASL-DVTEIAVPKSDFYSYELKYSSLNSTHVL 215
              +  +Q+L++Q + G  E    V+ D +   +   A+   D           +S  V 
Sbjct: 199 MDASPVNQILVDQSLLGWKEFEMEVVRDTADNAIIVCAIENIDPMGVHT----GDSITVA 254

Query: 216 PA-KIPLDIYKEVQRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           PA  +    Y+ ++  +    + IG   G S   +  +P   ++  +E+N 
Sbjct: 255 PALTLTDKEYQVMRNHSIAVLREIGVETGGSNVQWAVNPADGRIVVIEMNP 305


>gi|34497217|ref|NP_901432.1| acyl-CoA carboxylase subunit [Chromobacterium violaceum ATCC 12472]
 gi|34103073|gb|AAQ59436.1| probable acyl-coA carboxylase subunit [Chromobacterium violaceum
           ATCC 12472]
          Length = 651

 Score = 70.5 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 35/196 (17%), Positives = 72/196 (36%), Gaps = 15/196 (7%)

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT----MDSQHLISPPYVIKPLK 134
           +      A A    K  +K ++   GVP+ P    +             I  P +IK   
Sbjct: 102 FIGPPASAIAAMGSKSAAKALMEKAGVPLVPGYHGDEQDPALLQQQADAIGYPVLIKASA 161

Query: 135 GGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDV 189
           GG   G+ ++++       L     ++ +    D++L+E+Y+     +   V  D     
Sbjct: 162 GGGGKGMRIVEQAGDFSAALASCQREARASFGDDKVLVEKYLTRPRHVEIQVFADKLGGC 221

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
             +           ++          PA  +P    + + + A  A +A+G  G    +F
Sbjct: 222 VYL-----FERDCSVQRRHQKVLEEAPAPHLPQATREAMGQAAVAAARAVGYVGAGTVEF 276

Query: 249 LFDPLSRKVFWLEINV 264
           + D  + K +++E+N 
Sbjct: 277 IMDVDTGKFYFMEMNT 292


>gi|30249625|ref|NP_841695.1| xarbamoyl-phosphate synthase [Nitrosomonas europaea ATCC 19718]
 gi|30138988|emb|CAD85572.1| Carbamoyl-phosphate synthase:Methylglyoxal synthase-like domain
           [Nitrosomonas europaea ATCC 19718]
          Length = 1065

 Score = 70.5 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 30/203 (14%), Positives = 70/203 (34%), Gaps = 22/203 (10%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQHLISPPYV 129
           LE   +P   +       + D+ R + ++   G+    +         + +   I  P V
Sbjct: 648 LETNGVPIIGTSPDMIDCAEDRERFQAMLQGLGLKQPSNFTARTAETALAAADKIGYPLV 707

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL--------IEQYVDGIELTCGV 181
           ++P        + ++ + + +   + ++   ++   +L        IE  VD I     V
Sbjct: 708 VRPSYVLGGRAMEIVHEARDLERYIQEAVKVSNDSPVLLDHYLNNAIEVDVDAISDGKAV 767

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241
           +    ++  E A   S            ++  + P  +   + +E++R       A+   
Sbjct: 768 LIGGIMEHIEQAGVHSG----------DSACSLPPFSLSASLQEELRRQTEAMAYALNVN 817

Query: 242 GISRSDFLFDPLSRKVFWLEINV 264
           G+    F        V+ LE+N 
Sbjct: 818 GLMNIQFAI--QDDTVYVLEVNP 838



 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 51/278 (18%), Positives = 101/278 (36%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  I         D +            ++V  ++   +PD    
Sbjct: 29  SGVQACRALREEGYRVILINSNPATIMTDPELTDATYIEPITWQAVEKIIEIERPDALLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      +LE   +    +   A   + D+ + KQ ++  G+    S +
Sbjct: 89  TMGGQTALNCALDLVRHGVLEKYGVVLIGASREAIDKAEDREKFKQAMTRIGLQSARSAM 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     M +Q +I  P +I+P       G  +    +       +    +   +LLIE+
Sbjct: 149 AHSMEEAMQAQAMIGYPAIIRPSFTLGGSGGGIAYNREEFIEICERGLEASPTRELLIEE 208

Query: 171 YVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            V G  E    V+ D   + +   A+   D           +S  V PA+ +    Y+ +
Sbjct: 209 SVIGWKEYEMEVIRDKQDNCIIVCAIENVDPMGVHT----GDSITVAPAQTLTDKEYQRM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P +  +  +E+N 
Sbjct: 265 RDASIAVLREIGVETGGSNVQFAINPENGNMLVIEMNP 302


>gi|76818864|ref|YP_336878.1| acetyl-CoA carboxylase biotin carboxylase subunit [Burkholderia
           pseudomallei 1710b]
 gi|254264403|ref|ZP_04955268.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Burkholderia
           pseudomallei 1710a]
 gi|76583337|gb|ABA52811.1| acetyl-CoA carboxylase, biotin carboxylase [Burkholderia
           pseudomallei 1710b]
 gi|254215405|gb|EET04790.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Burkholderia
           pseudomallei 1710a]
          Length = 481

 Score = 70.5 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 76/220 (34%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+    A +E   + +        A   DK R+++     GVP  P    
Sbjct: 92  AIHPGYGFLSENADFAAQVEAAGLIFVGPPARVIATMGDKARARETARRAGVPTVPGSEG 151

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK----DQSIPLDLLQSSSWNHGDQ 165
            +       +    I  P +IK   GG   GI V          +PL   ++ +      
Sbjct: 152 VVASLDGAHEVAARIGYPVMIKAAAGGGGRGIRVAHDAAQLAAQLPLAQREAQAAFGDGG 211

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+++     +   ++GD   +V  +   +        K             +   + 
Sbjct: 212 VYLERFIARARHIEVQILGDGE-NVIHLFERECSLQRRRQKIL----EEAPSPSLTPALR 266

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +   A    + +  RG    ++LFD    + +++E+N 
Sbjct: 267 DTLCASATRLARQVSYRGAGTLEYLFDDARGEFYFIEMNT 306


>gi|321463584|gb|EFX74599.1| carboxylase:pyruvate/acetyl-coa/propionyl-CoA [Daphnia pulex]
          Length = 1195

 Score = 70.5 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 31/198 (15%), Positives = 70/198 (35%), Gaps = 16/198 (8%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIK 131
            I +            DK+ ++Q      VP+ P     +      ++       P + K
Sbjct: 148 GIRFIGPSPRVVHQMGDKVAARQAAIEANVPIVPGTPGPVTTTEEAVNFCREYGLPVIFK 207

Query: 132 PLKGGSSLGIIVIKKDQSIPL----DLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDAS 186
              GG   G+ V++K + +         ++ +      + IE++V+    +   ++GD +
Sbjct: 208 AAYGGGGRGMRVVRKMEEVEELFQRATSEALAAFGNGAMFIEKFVERPRHIEVQILGDRA 267

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISR 245
            +V              ++        + PA  +   + + +   A    Q +G      
Sbjct: 268 GNVV-----HLFERDCSVQRRHQKVVEIAPAPNLDPAVRERMTIDAVRLCQHVGYENAGT 322

Query: 246 SDFLFDPLSRKVFWLEIN 263
            +FL D   R  +++E+N
Sbjct: 323 VEFLVDEAGRH-YFIEVN 339


>gi|83309338|ref|YP_419602.1| pyruvate carboxylase [Magnetospirillum magneticum AMB-1]
 gi|82944179|dbj|BAE49043.1| Pyruvate carboxylase [Magnetospirillum magneticum AMB-1]
          Length = 1154

 Score = 70.5 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 32/228 (14%), Positives = 77/228 (33%), Gaps = 16/228 (7%)

Query: 47  AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP 106
                D      +G   E+      +    + +         L  +K+ ++ +    GVP
Sbjct: 81  KEAGCDAVHPG-YGFLSENPDFADAVRAAGMAFVGPSSDVMRLLGNKVAARALAEKAGVP 139

Query: 107 VCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL----DLLQSS 158
           V P+       +         +  P ++K   GG   G+ VI+ +  +         ++ 
Sbjct: 140 VMPATGPLPADLVECKRQAAAVGYPLMLKASWGGGGRGMRVIEAETELEELLAVARREAK 199

Query: 159 SWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
           +    D++ +E+ V     +   ++GD+  ++  +           ++  +       PA
Sbjct: 200 AAFGNDEVYLEKLVRRARHVEVQILGDSQGNLVHLYE-----RDCSVQRRNQKVVERAPA 254

Query: 218 K-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +      E+   A    +A         +FL D  +   +++E+N 
Sbjct: 255 PYLDGRQRSELCETAVRLARAAAYENAGTVEFLMDMETGAFYFIEVNP 302


>gi|326803919|ref|YP_004321737.1| pyruvate carboxylase [Aerococcus urinae ACS-120-V-Col10a]
 gi|326650896|gb|AEA01079.1| pyruvate carboxylase [Aerococcus urinae ACS-120-V-Col10a]
          Length = 1144

 Score = 70.5 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 33/242 (13%), Positives = 81/242 (33%), Gaps = 23/242 (9%)

Query: 35  QIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSM 91
            +D+   +  +    + D     +H  +G   E+    +      I +         +  
Sbjct: 61  YLDI-EDIIRIAKETQAD----AIHPGYGFLSENQEFASRCREEGIIFIGPNTDTLDMFG 115

Query: 92  DKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKD 147
           DK+++K      G+   P    +  +++        +  P ++K   GG   G+ V++ D
Sbjct: 116 DKIKAKAAAHQAGIQEVPGTEGDVESVEEVKAFAKEVGYPIMVKAALGGGGRGMRVVRSD 175

Query: 148 QSIPLDLLQSSSWNH----GDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSY 202
             +      + S        D++  E+Y++    +   ++GD + +V  +          
Sbjct: 176 DEVEEAYKTAKSEAKTAFGSDEIYAEKYIENPKHIEVQILGDQAGNVVHLWERDCSIQRR 235

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
             K             +  D+   +   A    + +G       +FL        +++E+
Sbjct: 236 HQK----VVEMAPSVSLDHDLRLRICEAARQLMENVGYVNAGTVEFLV--SGDDFYFIEV 289

Query: 263 NV 264
           N 
Sbjct: 290 NP 291


>gi|265766617|ref|ZP_06094446.1| acetyl-CoA carboxylase, biotin carboxylase [Bacteroides sp. 2_1_16]
 gi|263252994|gb|EEZ24470.1| acetyl-CoA carboxylase, biotin carboxylase [Bacteroides sp. 2_1_16]
          Length = 506

 Score = 70.5 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 80/220 (36%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+           I +            DK+ ++  +   GVPV P    
Sbjct: 79  AIHPGYGFLSENATFARRCREEGITFIGPDPETMEAMGDKISARIKMIEAGVPVVPGTQD 138

Query: 114 NRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
           N  +++      + I  P ++K   GG   G+ +I     +      + S +      D 
Sbjct: 139 NLKSVEEAVELCNQIGYPVMLKASMGGGGKGMRLIHHADEVAEAYTTAKSESLSSFGDDT 198

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E++V+    +   ++GD   +V  +   +        K             I  ++ 
Sbjct: 199 VYLEKFVEEPHHIEFQILGDKHGNVIHLCERECSVQRRNQKI----VEESPSVFITPELR 254

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +++   A  A +A+   G    +FL D   R  ++LE+N 
Sbjct: 255 RDMGEKAVAAAKAVNYIGAGTIEFLVDKH-RNYYFLEMNT 293


>gi|192358837|ref|YP_001983200.1| acetyl-CoA carboxylase, biotin carboxylase [Cellvibrio japonicus
           Ueda107]
 gi|190685002|gb|ACE82680.1| acetyl-CoA carboxylase, biotin carboxylase [Cellvibrio japonicus
           Ueda107]
          Length = 446

 Score = 70.5 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 33/222 (14%), Positives = 76/222 (34%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      ++     +         +  DK+ + + +   GVP  P    
Sbjct: 77  AVHPGYGFLAENADFAERVQKSGFTFIGPDPDVIRMMGDKVEAIKAMKKAGVPTVPGSDG 136

Query: 112 ---LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGD 164
                    +     I  P +IK   GG   G+ V+  + ++   +     ++ +     
Sbjct: 137 PLPEDPEECLKIAKRIGYPVIIKAAAGGGGRGMRVVHTEAALINSIHVTQGEAKAAFGDG 196

Query: 165 QLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+++ +   +   V+ D   +               L+          PA  IP +
Sbjct: 197 TVYMEKFLQNPRHVEVQVLSDGQGNAI-----HLGDRDCSLQRRHQKVLEEAPAPGIPQE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +        A   IG +G    +FL+     + +++E+N 
Sbjct: 252 VREATYASCVKACIDIGYKGAGTFEFLY--EDGRFYFIEMNT 291


>gi|163782970|ref|ZP_02177965.1| ketol-acid reductoisomerase [Hydrogenivirga sp. 128-5-R1-1]
 gi|159881650|gb|EDP75159.1| ketol-acid reductoisomerase [Hydrogenivirga sp. 128-5-R1-1]
          Length = 556

 Score = 70.5 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 47/289 (16%), Positives = 106/289 (36%), Gaps = 38/289 (13%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQID---------------------VDRSVGLV 45
           G ++E + S   G     AL   G++V  ++                      +  +  V
Sbjct: 21  GQAAEFDYS---GTQACKALRQEGYEVVLVNSNPATIMTDPEVADRTYIEPLTEEILEEV 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   +PD     L G    +  V    + IL+   +    +   A     D+   ++ ++
Sbjct: 78  IRRERPDALLPTLGGQTALNLSVKLYEEKILDAYGVEMIGANYEAIKRGEDRELFREAMN 137

Query: 102 SCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
           + G+ V  S +V+     + +   I  P +++P       G  +    +     L  +  
Sbjct: 138 NIGLKVPESAVVSSEEEGLRAVEEIGFPVILRPAFTLGGTGGSIAYNVEEFKHKLEVALK 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPA 217
            +   Q+L+++ + G  E    V+ D + +V  +   ++    ++       +S  V PA
Sbjct: 198 TSPIHQVLLDKSLIGWKEFEFEVIRDKADNVIIVCSIEN----FDPMGVHTGDSITVAPA 253

Query: 218 K-IPLDIYKEVQRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
           + +    Y+ ++  +    + IG   G S   F   P +   + +E+N 
Sbjct: 254 QTLTDKEYQILRDASIAVIREIGVDTGGSNIQFAVSPENGDFYVIEMNP 302


>gi|325695911|gb|EGD37802.1| carbamoyl-phosphate synthase, large subunit [Streptococcus
           sanguinis SK160]
          Length = 1059

 Score = 70.5 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 23/224 (10%), Positives = 72/224 (32%), Gaps = 11/224 (4%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYV 129
           L    +    + +     + D+   +Q +    +P  P           ++   I  P +
Sbjct: 646 LSKAGVKILGTQVADLDRAEDRDLFEQALKELHIPQPPGQTATNEEEAVEAARKIGFPVL 705

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           ++P        + +++ +  +   +  +   +    +L++ Y+ G E     + D    +
Sbjct: 706 VRPSYVLGGRAMEIVENEADLRSYMRTAVKASPDHPILVDSYILGDECEVDAISDGRQVL 765

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
               +   +       +S  +     P  +   +   +          + C G+    F+
Sbjct: 766 IPGIMEHIERAGV---HSGDSMAAYPPQTLSQKVKDTIADYTKRLALGLNCIGMMNIQFV 822

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
                 +V+ +E+N +   T     P ++        ++   ++
Sbjct: 823 I--KDEQVYVIEVNPRASRT----VPFLSKVTDIPMAQVATRLI 860



 Score = 65.1 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 36/206 (17%), Positives = 78/206 (37%), Gaps = 9/206 (4%)

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147
           + D+   KQ++   G P+  S +VN     ++    I  P +++P       G  +   +
Sbjct: 126 AEDRDLFKQLMEELGQPIPESEIVNTVDEALEFAAGIGYPVIVRPAFTLGGTGGGICSNE 185

Query: 148 QSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
           + +          +   Q LIE+ + G  E+   VM D + +   + V   + +     +
Sbjct: 186 EELQEIAENGLKLSPVTQCLIERSIAGFKEIEYEVMRDGADNA--LVVCNMENFDPVGIH 243

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
           +  +        I    Y+ ++  +    +A+   G        DP S + + +E+N  P
Sbjct: 244 TGDSIVFAPSQTISDYEYQMLRDASLKIIRALKIEGGCNVQLALDPHSFRYYVIEVN--P 301

Query: 267 GMTPVSIFPEMAAYAGYSFRELLLWM 292
            ++  S     +   GY   +L   +
Sbjct: 302 RVSRSS--ALASKATGYPIAKLAAKI 325


>gi|315636749|ref|ZP_07891978.1| ATP-grasp domain protein [Arcobacter butzleri JV22]
 gi|315478966|gb|EFU69670.1| ATP-grasp domain protein [Arcobacter butzleri JV22]
          Length = 350

 Score = 70.5 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 22/174 (12%), Positives = 69/174 (39%), Gaps = 8/174 (4%)

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQ 148
           L+ +K+  K+ +    +P     +      + +   + P +IKP+      G+  +   +
Sbjct: 82  LTTNKLLMKEALVKSSIPTANYKV--ESVSNFKEPQNFPIIIKPIDSSGGRGLSFVNSKE 139

Query: 149 SIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS 208
            +   + + S ++  ++ L+E+Y+ G + +   +         IA+    F       + 
Sbjct: 140 ELNQAIKKISKYSKEEKFLVEEYIQGEQYSIETISCKGHHSI-IAITHEFF---REVPNI 195

Query: 209 LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLE 261
           +   H +PA +  ++ + + ++      +   + G    +      + +++ +E
Sbjct: 196 IEKKHYIPASLNTNLKERISKIVENILNSFKIKFGACHIELKIT-SNNEIYIIE 248


>gi|310790816|gb|EFQ26349.1| carbamoyl-phosphate synthase [Glomerella graminicola M1.001]
          Length = 1167

 Score = 70.5 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 61/325 (18%), Positives = 114/325 (35%), Gaps = 50/325 (15%)

Query: 4   LMGGISSEREVSLSSGKACASALEDAGF--------------------KVSQIDVDRS-V 42
           L  G + E + S   G     AL++ G                     +V  + V    V
Sbjct: 102 LAIGQAGEFDYS---GSQALKALKEEGVKSVLINPNIATIQTNHSLADEVYYLPVTPEYV 158

Query: 43  GLVLAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQ 98
             V+   KPD  F    G    +  VQ     + E   +    + +     S D+    +
Sbjct: 159 TYVIEKEKPDGIFLSFGGQTALNLGVQMQRMGLFEKYGVKVLGTSVKTLETSEDRDLFAR 218

Query: 99  VVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
            +    +P+  SI V      +D+   +  P +++       LG       + +    + 
Sbjct: 219 ALDEIDIPIAKSIAVGTVEEALDAAEKVGYPIIVRAAYALGGLGSGFANNQEELR--NMA 276

Query: 157 SSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215
           + S     Q+L+E+ + G  EL   V+ DA+ +   I V   + +   L   + +S  V 
Sbjct: 277 ARSLTLSPQILVEKSLKGWKELEYEVVRDANNN--CITVCNMENFD-PLGIHTGDSIVVA 333

Query: 216 PAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI- 273
           P++ +  + Y  ++  A    + +G  G     +   P       +E+N +  ++  S  
Sbjct: 334 PSQTLSDEEYHMLRSAAIKIVRHLGVVGECNVQYALQPDGLDYRVIEVNAR--LSRSSAL 391

Query: 274 ------FPEMAAYA----GYSFREL 288
                 +P     A    GYS  EL
Sbjct: 392 ASKATGYPLAYTAAKIGLGYSLPEL 416



 Score = 54.7 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/176 (11%), Positives = 61/176 (34%), Gaps = 12/176 (6%)

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVI 130
           E        +  +    + D+ +  +++ S G+       +   +        +  P ++
Sbjct: 730 ETGGAKVLGTDPIDIDKAEDRQKFSEILDSIGIDQPAWKELTSVQEAEAFADQVGYPVLV 789

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL----TCGVMGDAS 186
           +P    S   + VI+  + +   L  +S+ +    ++I ++++G +          G+  
Sbjct: 790 RPSYVLSGAAMTVIRGREDLKEKLEAASNVSPDHPVVISKFIEGAQEIDVDAVASKGNLI 849

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
           L      V ++  +S +       +  + P  +        + +A    +A    G
Sbjct: 850 LHAVSEHVEQAGVHSGDA------TLVLPPVNLDQTTLDRCKDIAERVAKAWNITG 899


>gi|295690190|ref|YP_003593883.1| carbamoyl-phosphate synthase subunit L [Caulobacter segnis ATCC
           21756]
 gi|295432093|gb|ADG11265.1| Carbamoyl-phosphate synthase L chain ATP-binding protein
           [Caulobacter segnis ATCC 21756]
          Length = 652

 Score = 70.5 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 45/226 (19%), Positives = 86/226 (38%), Gaps = 24/226 (10%)

Query: 57  VLHGNFG---EDGLV-QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            +H  +G   E+    Q++++   + +      A      K  +K V+   GVP  P  L
Sbjct: 77  AIHPGYGFLSENADFAQSVID-AGLTWIGPPPSAIRAMGLKDAAKAVMIEAGVPTTPGYL 135

Query: 113 VNRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
               +          I  P +IK + GG   G+  +++ +     L     ++S+    D
Sbjct: 136 GEDQSAPRLAAEADKIGYPVLIKAVAGGGGKGMRKVERAEDFEAALGSCRREASAAFGDD 195

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
           ++L+E+YV     +   V GD+  DV              L+          PA  +   
Sbjct: 196 RVLLEKYVTRPRHIEVQVFGDSHGDVV-----HLFERDCSLQRRHQKVIEEAPAPGMDEK 250

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR----KVFWLEINV 264
             + V   A  A +A+G  G    +F+ D        +++++E+N 
Sbjct: 251 TREAVCAAAVKAAKAVGYVGAGTVEFIADASEGLRADRIWFMEMNT 296


>gi|206561758|ref|YP_002232523.1| acetyl-CoA carboxylase biotin carboxylase subunit [Burkholderia
           cenocepacia J2315]
 gi|198037800|emb|CAR53744.1| biotin carboxylase [Burkholderia cenocepacia J2315]
          Length = 455

 Score = 70.5 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 79/222 (35%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H  +G   E+      +E     +         +  DK+ +KQ +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAERVEQSGFTFIGPRPETIRMMGDKVTAKQTMIKTGVPCVPGSEG 136

Query: 113 ----VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
                 +  +     I  P +IK   GG   G+ V+  + ++   +     ++       
Sbjct: 137 ALPDDPKEIVKIARTIGYPVIIKAAGGGGGRGMRVVHTEAALVNAVNMTREEAGRAFGNP 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
           Q+ +E++++    +   V+ DA  +   +            K          PA  IP  
Sbjct: 197 QVYMEKFLENPRHIEIQVLSDAYKNAIWLGERDCSMQRRHQK-----VIEEAPAPGIPRR 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +   +      A + +G  G    +FL+   + + +++E+N 
Sbjct: 252 LIDRIGDRCADACKKMGYLGAGTFEFLY--ENGEFYFIEMNT 291


>gi|163941626|ref|YP_001646510.1| carbamoyl phosphate synthase large subunit [Bacillus
           weihenstephanensis KBAB4]
 gi|226700922|sp|A9VTC6|CARB_BACWK RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|163863823|gb|ABY44882.1| carbamoyl-phosphate synthase, large subunit [Bacillus
           weihenstephanensis KBAB4]
          Length = 1072

 Score = 70.5 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 50/314 (15%), Positives = 113/314 (35%), Gaps = 37/314 (11%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQIDVD---------------------RSVGLV 45
           G ++E + S   G     +L + G+KV  ++ +                       V  +
Sbjct: 21  GQAAEFDYS---GTQACQSLREEGYKVILVNSNPATIMTDTATADKVYIEPLTLEFVSRI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   +PD     L G  G +  V+     ILE   +    + + A   + D+   + ++ 
Sbjct: 78  IRKERPDALLPTLGGQTGLNMAVELAKSGILEECGVEILGTKLSAIEQAEDRDLFRTLMQ 137

Query: 102 SCGVPVCPSILVNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
               P+  S +++      +    I  P +++P       G  +   ++ +   +     
Sbjct: 138 ELNEPIPSSTIIHTLEEAHEFVKEIGYPVIVRPAFTMGGTGGGICNNEEELIEIVSGGLK 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   Q L+E+ + G  E+   VM D++ +   I V   +       ++  +        
Sbjct: 198 HSPVTQCLLEKSIAGCKEIEYEVMRDSNDNA--IVVCNMENIDPVGVHTGDSIVVAPSQT 255

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278
           +    Y+ ++  +    +A+G  G        DP S + + +E+N  P ++  S     +
Sbjct: 256 LSDREYQMLRNTSLRIIRALGIEGGCNVQLALDPHSFQYYVIEVN--PRVSRSS--ALAS 311

Query: 279 AYAGYSFRELLLWM 292
              GY   +L   +
Sbjct: 312 KATGYPIAKLAAKI 325



 Score = 65.5 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 26/221 (11%), Positives = 80/221 (36%), Gaps = 20/221 (9%)

Query: 68  VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLIS 125
           + A LE   +    + +     + D+ + +  ++  G+P             +     I 
Sbjct: 642 LAAKLEAHGVKILGTSLEDLDRAEDRDKFEAALTKLGIPQPVGKTATTVEQAVAIADKIG 701

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            P +++P        + ++ + + +   +  +   +    +LI++Y+ G E+    + D 
Sbjct: 702 YPVLVRPSYVLGGRAMEIVYRQEELLHYMKNAVKVHADHPVLIDRYMVGKEIEVDAISDG 761

Query: 186 S---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCR 241
               +      + ++  +S        +S  V P + +   + +++        + +   
Sbjct: 762 ENVFIPGIMEHIERAGVHS-------GDSIGVYPPQSLSEKLKEQIIEHTIGLGKGLNIV 814

Query: 242 GISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277
           G+    F+      +V+ +E+N       P ++ ++  P  
Sbjct: 815 GLLNIQFVVFK--DEVYVIEVNPRASRTVPFLSKITGVPMA 853


>gi|317481637|ref|ZP_07940672.1| carbamoyl-phosphate synthase [Bifidobacterium sp. 12_1_47BFAA]
 gi|322691567|ref|YP_004221137.1| carbamoyl phosphate synthase large subunit [Bifidobacterium longum
           subsp. longum JCM 1217]
 gi|316916927|gb|EFV38314.1| carbamoyl-phosphate synthase [Bifidobacterium sp. 12_1_47BFAA]
 gi|320456423|dbj|BAJ67045.1| carbamoyl phosphate synthase large subunit [Bifidobacterium longum
           subsp. longum JCM 1217]
          Length = 1127

 Score = 70.5 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 45/288 (15%), Positives = 103/288 (35%), Gaps = 36/288 (12%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQIDVDRS---------------------VGLV 45
           G ++E + S   G      L + G +V  ++ + +                     +  +
Sbjct: 21  GQAAEFDYS---GTQACRVLREEGIRVILVNSNPATIMTDPEMADATYIEPIATPILEQI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +A  +PD     L G    +  +      +LE   +    + + A     D+   K+VV 
Sbjct: 78  IAKERPDALLPTLGGQTALNAAMALGEAGVLEKYNVELIGASLEAIDRGEDRELFKKVVD 137

Query: 102 SCGVPVCPSILVNRFTMDS--QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G     S + +              P V++P      LG  +   ++ +         
Sbjct: 138 EAGAESARSDIAHSIEEVDKIAEKFGYPLVVRPSFTMGGLGSGIAHNEEELHRIAGAGIH 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
           ++  D++LIE+ ++G  E    +M D + +V  +   ++      +   + +S  V P  
Sbjct: 198 YSPTDEVLIEEGIEGWKEFELELMRDRNDNVVVVCPIENVD---PVGVHTGDSITVAPCF 254

Query: 219 -IPLDIYKEVQRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
            +    Y++++ +     + +G   G     F   P + ++  +E+N 
Sbjct: 255 TLTDREYQKLRDIGIAIIRGVGVDTGGCNIQFAVHPDTGRIIVIEMNP 302



 Score = 51.7 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/233 (13%), Positives = 76/233 (32%), Gaps = 29/233 (12%)

Query: 67  LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTMDSQHLI 124
            + A L+   +P   +   +  L+ ++    +V+    +        L      ++ H I
Sbjct: 651 SLAARLKAAGVPILGTTPESIDLAENRELFGEVLKKAEMNAPRYGTALSLEEAKEAAHRI 710

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
             P +++P       G+ ++  D+ +   + ++ +    D +     V G   +  ++  
Sbjct: 711 GYPVLVRPSYVLGGRGMEIVYDDKQLNKYVDRALAEAKADTV-----VSGRLPSPLLIDK 765

Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK--------------IPLDIYKEVQRL 230
              D  EI V     +  E  Y      HV  A               +  D  + ++  
Sbjct: 766 FLQDAIEIDV--DALFDGEELYIGGIMEHVEEAGVHSGDAACTLPPSTLSDDQIRRLREG 823

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283
            +   +    +G+    + F      ++ +E N +   T     P  +   G 
Sbjct: 824 TYAIAKGCHVQGLINVQYAFMA--NTLYVIEANPRASRT----VPFASKATGV 870


>gi|313900008|ref|ZP_07833508.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Clostridium sp.
           HGF2]
 gi|312955060|gb|EFR36728.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Clostridium sp.
           HGF2]
          Length = 455

 Score = 70.5 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 78/220 (35%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  FG   E+     ++    + +            DK  +++ +   GVPV P    
Sbjct: 77  AIHPGFGFLSENAKFARLVLQCGLIFVGPNPDVIEQMGDKNNARRCMMEAGVPVIPGSKD 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
            +   +        I  P +IK   GG   G+      + +      + +        D 
Sbjct: 137 LLETVQDAAAMAEKIGYPVLIKASSGGGGRGMRRADCAEELADAFDTAKAEARANFGDDA 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+++ +   +   +M D   +V  +            K       H+    +  D+ 
Sbjct: 197 VYMEKFIVEPKHVEVQLMADKHGNVVHLYERDCSCQRRNQKLLEEAPCHI----LEEDVR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + + R A  A +++G   +   +FL D    + +++E+N 
Sbjct: 253 EHLLRDAVRAAESVGYDSVGTIEFLLDAR-GEYYFMEMNT 291


>gi|257898759|ref|ZP_05678412.1| phosphoribosylaminoimidazole carboxylase [Enterococcus faecium
           Com15]
 gi|257836671|gb|EEV61745.1| phosphoribosylaminoimidazole carboxylase [Enterococcus faecium
           Com15]
          Length = 374

 Score = 70.5 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 37/207 (17%), Positives = 83/207 (40%), Gaps = 15/207 (7%)

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTMDSQ 121
           E+  V+A+  +L + +   G    A++ D++  K  + +  + + P   +       D+ 
Sbjct: 78  ENVSVEALNAILPMSFIPQGTDLLAITQDRLLEKSFLETNNIVIAPYATIVSPTDIQDAI 137

Query: 122 HLISPPYVIKPLKGG-SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTC 179
             I  P V+K  +GG    G  V+K    +   +            ++E ++    E++ 
Sbjct: 138 DGIGYPCVLKTTRGGYDGKGQYVLKSRADLAPAMDL----LREGTCVLEAWIPFEKEISI 193

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
            V G+   D T   V ++         +++    + PA I  D+ +E +R+A +  +A+ 
Sbjct: 194 MVAGNGQGDFTTFPVVENIHR------NNILHETIAPAAIAQDVIEEAERIARVIAEAVS 247

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQP 266
             G    +         ++  E+  +P
Sbjct: 248 LSGALGVEMFLTKTGG-LYVNELAPRP 273


>gi|53721231|ref|YP_110216.1| acetyl-CoA carboxylase biotin carboxylase subunit [Burkholderia
           pseudomallei K96243]
 gi|52211645|emb|CAH37641.1| biotin carboxylase [Burkholderia pseudomallei K96243]
          Length = 481

 Score = 70.5 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 77/220 (35%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+    A +E   + +        A   DK R+++     GVP  P    
Sbjct: 92  AIHPGYGFLSENADFAAQVEAAGLIFVGPPARVIATMGDKARARETARRAGVPTVPGSEG 151

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK----DQSIPLDLLQSSSWNHGDQ 165
            +       +    I  P +IK   GG   GI V          +PL   ++ +      
Sbjct: 152 VVASLDGAREVAARIGYPVMIKAAAGGGGRGIRVAHDAAQLAAQLPLAQREAQAAFGDGG 211

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+++     +   ++GD   +V  +   +        K             +   + 
Sbjct: 212 VYLERFIARARHIEVQILGDGE-NVIHLFERECSLQRRRQKIL----EEAPSPSLTPALR 266

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +   A    + +  RG    ++LFD    +++++E+N 
Sbjct: 267 DTLCASATRLARQVSYRGAGTLEYLFDDARGELYFIEMNT 306


>gi|305665866|ref|YP_003862153.1| acetyl-CoA carboxylase, biotin carboxylase [Maribacter sp.
           HTCC2170]
 gi|88710641|gb|EAR02873.1| Acetyl-CoA carboxylase, biotin carboxylase [Maribacter sp.
           HTCC2170]
          Length = 450

 Score = 70.5 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 33/220 (15%), Positives = 82/220 (37%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H  +G   E+     I    EI +  +         DK  +K+ +   GVP  P    
Sbjct: 77  AIHPGYGFLSENSKFSKICAEHEIKFIGASGEHIDRMGDKASAKETMKKAGVPTVPGSAG 136

Query: 113 VNRFTMDSQHL---ISPPYVIKPLKGGSSLGIIVIKKDQS----IPLDLLQSSSWNHGDQ 165
           + +  ++++ +   +  P +IK   GG   G+  +  + +        + ++++      
Sbjct: 137 LLKDVVEAKKVAKKMGYPVMIKATAGGGGKGMRAVWSEDAMEDLFESAVQEATAAFGNGG 196

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+ ++    +   ++GD       ++           K     +       +   + 
Sbjct: 197 MYMEKLIEEPRHIEIQIVGDQYGKACHLSERDCSIQRRHQK----LTEETPSPFMTDKLR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +++ + A  A + I   G    +FL D   R  +++E+N 
Sbjct: 253 EDMGKAAVKAAEFIKYEGAGTIEFLVDKH-RNFYFMEMNT 291


>gi|99080473|ref|YP_612627.1| carbamoyl phosphate synthase large subunit [Ruegeria sp. TM1040]
 gi|99036753|gb|ABF63365.1| carbamoyl-phosphate synthase large subunit [Ruegeria sp. TM1040]
          Length = 1120

 Score = 70.5 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 43/268 (16%), Positives = 98/268 (36%), Gaps = 35/268 (13%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAI---- 71
           AL DAG++   +         D D S  L    L  +    +L     E+G +  +    
Sbjct: 613 ALTDAGYETIMVNCNPETVSTDYDTSDRLYFEPLTMEHVMEILRVEQ-ENGTLHGVIVQF 671

Query: 72  -----------LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--M 118
                      LE   IP   +   A  L+ D+ R + +V+  G+    + + +     +
Sbjct: 672 GGQTPLKLANALEAEGIPILGTTPDAIDLAEDRERFQALVNELGLKQPKNGIASTGEQAL 731

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IEL 177
                I  P VI+P        + +++    +   + ++   +    +L++ Y+ G +EL
Sbjct: 732 KIAEEIGFPLVIRPSYVLGGRAMEIVRDMDQLKRYINEAVVVSGDSPVLLDSYLSGAVEL 791

Query: 178 TC-GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
               +     + V  I             +S  ++  + P  +  ++ + ++  +F   +
Sbjct: 792 DVDAICDGKDVHVAGI----MQHIEEAGVHSGDSACSLPPYSLDKEVIERIKEQSFALAK 847

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINV 264
           A+   G+    F       +++ +E+N 
Sbjct: 848 ALNVVGLMNVQFAI--KDNEIYLIEVNP 873



 Score = 52.8 bits (126), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 43/291 (14%), Positives = 96/291 (32%), Gaps = 48/291 (16%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D                V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPGLADATYIEPITPEVVAKIIEKERPDALLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G  G +  +      +LE   +    +   A  ++ D+   ++ +   G+    + +
Sbjct: 89  TMGGQTGLNTSLALEEMGVLEKFNVEMIGAKREAIEMAEDRKLFREAMDRLGLENPRATI 148

Query: 113 VN---------------RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
           V                   +++   I  P +I+P       G  V    +         
Sbjct: 149 VTAPKKDNGNADLEAGVALALEALEDIGLPAIIRPAFTLGGTGGGVAYNREDYIHYCRSG 208

Query: 158 SSWNHGDQLLIEQYVDG-IELTCGVMGDASL-DVTEIAVPKSDFYSYELKYSSLNSTHVL 215
              +  +Q+L+++ + G  E    V+ D +   +   ++   D           +S  V 
Sbjct: 209 MDASPVNQILVDESLLGWKEYEMEVVRDKADNAIIVCSIENVDPMGVHT----GDSITVA 264

Query: 216 PA-KIPLDIYKEVQRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           PA  +    Y+ ++  +    + IG   G S   +  +P   ++  +E+N 
Sbjct: 265 PALTLTDKEYQMMRTASIAVLREIGVETGGSNVQWAVNPADGRMVVIEMNP 315


>gi|296417048|ref|XP_002838177.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295634091|emb|CAZ82368.1| unnamed protein product [Tuber melanosporum]
          Length = 1167

 Score = 70.5 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 58/291 (19%), Positives = 108/291 (37%), Gaps = 41/291 (14%)

Query: 6   GGIS----SEREVSLSSGKACASALEDAGF--------------------KVSQIDVDRS 41
           GG+S     E + S   G     AL++AG                     +V  + V   
Sbjct: 104 GGLSIGQAGEFDYS---GSQAIKALKEAGKKSILINPNIATIQTSHFLADEVYYLPVTPE 160

Query: 42  -VGLVLAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRS 96
            V  V+   +PD  F    G  G +  VQ     I + + +    + I     S D+   
Sbjct: 161 YVSHVIERERPDGIFLTFGGQTGLNVGVQMDKMGIFDRMGVKVLGTPIKTLETSEDRDLF 220

Query: 97  KQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154
            + ++   +P+  SI VN     +D+   I  P +++       LG       + +    
Sbjct: 221 AKALNEIEIPIAESIAVNSVDEALDAAEKIGYPIIVRSAYALGGLGSGFANDREELH--D 278

Query: 155 LQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTH 213
           L + S +   Q+L+E+ + G  E+   V+ D S +   I V   + +   L   + +S  
Sbjct: 279 LSARSLSLSPQILVEKSLKGWKEVEYEVVRDGSNN--CITVCNMENFD-PLGIHTGDSIV 335

Query: 214 VLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
           V P++ +  + Y  ++  A    + +G  G     +   P       +E+N
Sbjct: 336 VAPSQTLSDEEYHMLRSAAIKIVRHLGVVGECNVQYALQPDGLDYRVIEVN 386



 Score = 56.3 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 25/160 (15%), Positives = 61/160 (38%), Gaps = 6/160 (3%)

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSS 138
            +       + D+ +  +++ S G+       +            +S P +++P    S 
Sbjct: 741 GTNPEDIDRAEDRHKFSKILDSIGIDQPAWKELTSVEEARTFAEEVSYPVLVRPSYVLSG 800

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD 198
             + VI+ +  +   LL +SS +    ++I ++++G      +  DA      + V    
Sbjct: 801 AAMSVIRNEAELEAKLLNASSVSPDHPVVITKFIEG---AMEIDVDAVASNGNLIVHAVS 857

Query: 199 FYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQA 237
            +       S ++T V  P  +  +    V+++A    +A
Sbjct: 858 EHIEPAGVHSGDATLVLPPVTLDEETMSRVKQIAEKVAKA 897


>gi|253995528|ref|YP_003047592.1| acetyl-CoA carboxylase, biotin carboxylase [Methylotenera mobilis
           JLW8]
 gi|253982207|gb|ACT47065.1| acetyl-CoA carboxylase, biotin carboxylase [Methylotenera mobilis
           JLW8]
          Length = 451

 Score = 70.5 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 35/222 (15%), Positives = 78/222 (35%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+      +E     +         L  DK+ +K  +   GVP  P    
Sbjct: 79  AIHPGYGFLSENADFAERVEQSGFVFIGPRAETIRLMGDKVSAKDAMRKAGVPCVPGSEG 138

Query: 111 -ILVNRFTMDS-QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
            +  +   +      I  P +IK   GG   G+ V+  + ++   +     ++ +     
Sbjct: 139 ALPDDPSEIIKIAKQIGYPVIIKAAGGGGGRGMRVVHTEAALLTSVNMTKAEAQAAFGNP 198

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+Y++    +   V+ D   +   +            K          PA  +   
Sbjct: 199 MVYMEKYLEKPRHIEIQVLADQHGNAVFLGERDCSMQRRHQK-----ILEEAPAPLLNAR 253

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +  ++      A + I  RG    +FL+   + + +++E+N 
Sbjct: 254 LRDKIGERCAEACRKIKYRGAGTFEFLY--ENGEFYFIEMNT 293


>gi|167896789|ref|ZP_02484191.1| acetyl-CoA carboxylase biotin carboxylase subunit [Burkholderia
           pseudomallei 7894]
          Length = 481

 Score = 70.5 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 77/220 (35%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+    A +E   + +        A   DK R+++     GVP  P    
Sbjct: 92  AIHPGYGFLSENADFAAQVEAAGLIFVGPPARVIATMGDKARARETARRAGVPTVPGSEG 151

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK----DQSIPLDLLQSSSWNHGDQ 165
            +       +    I  P +IK   GG   GI V          +PL   ++ +      
Sbjct: 152 VVASLDGAHEVAARIGYPVMIKAAAGGGGRGIRVAHDAAQLAAQLPLAQREAQAAFGDGG 211

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+++     +   ++GD   +V  +   +        K             +   + 
Sbjct: 212 VYLERFIARARHIEVQILGDGE-NVIHLFERECSLQRRRQKIL----EEAPSPSLTPALR 266

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +   A    + +  RG    ++LFD    +++++E+N 
Sbjct: 267 DALCASATRLARQVSYRGAGTLEYLFDDARGELYFIEMNT 306


>gi|134102555|ref|YP_001108216.1| pyruvate carboxylase [Saccharopolyspora erythraea NRRL 2338]
 gi|133915178|emb|CAM05291.1| pyruvate carboxylase [Saccharopolyspora erythraea NRRL 2338]
          Length = 1125

 Score = 70.5 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 36/216 (16%), Positives = 80/216 (37%), Gaps = 17/216 (7%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV----CPSILVN 114
           +G   E+  +        I +         ++ +K  +       GVPV     PS  ++
Sbjct: 83  YGFLSENPELAKACHEAGITFVGPSHEILQMTGNKATAVAAAREAGVPVLDSSAPSSDID 142

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK----DQSIPLDLLQSSSWNHGDQLLIEQ 170
               ++++ +  P  +K + GG   G+  + +     +S+   + ++ S      + +EQ
Sbjct: 143 ALMSEAEN-MEFPVFVKAVAGGGGRGMRRVNELGALRESLEAAMREAESAFGDPTVFLEQ 201

Query: 171 Y-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQ 228
             V+   +   ++ DA+ +V  +           ++        + PA  +   + + + 
Sbjct: 202 AVVNPRHIEVQILADAAGNVIHLYE-----RDCSVQRRHQKVIEIAPAPNLDPQLRERIC 256

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             A    + IG       +FL D   R VF  E+N 
Sbjct: 257 NDAVAFARKIGYVNAGTVEFLVDERGRHVFI-EMNP 291


>gi|78065163|ref|YP_367932.1| acetyl-CoA carboxylase biotin carboxylase subunit [Burkholderia sp.
           383]
 gi|77965908|gb|ABB07288.1| Acetyl-CoA carboxylase, biotin carboxylase [Burkholderia sp. 383]
          Length = 455

 Score = 70.5 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 79/222 (35%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H  +G   E+      +E     +         +  DK+ +KQ +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAERVEQSGFTFIGPRPETIRMMGDKVTAKQTMIKTGVPCVPGSEG 136

Query: 113 ----VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
                 +  +     I  P +IK   GG   G+ V+  + ++   +     ++       
Sbjct: 137 ALPDDPKEIVKIARAIGYPVIIKAAGGGGGRGMRVVHTEAALVNAVNMTREEAGRAFGNP 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
           Q+ +E++++    +   V+ DA  +   +            K          PA  IP  
Sbjct: 197 QVYMEKFLENPRHIEIQVLSDAYKNAIWLGERDCSMQRRHQK-----VIEEAPAPGIPRR 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +   +      A + +G  G    +FL+   + + +++E+N 
Sbjct: 252 LIDRIGDRCADACKKMGYLGAGTFEFLY--ENNEFYFIEMNT 291


>gi|15669571|ref|NP_248384.1| carbamoyl-phosphate synthase subunit CarB2 [Methanocaldococcus
           jannaschii DSM 2661]
 gi|22095497|sp|Q58776|CARB2_METJA RecName: Full=Carbamoyl-phosphate synthase large chain, C-terminal
           section; AltName: Full=Carbamoyl-phosphate synthetase
           ammonia chain
 gi|1592027|gb|AAB99391.1| carbamoyl-phosphate synthase, large subunit (carB2)
           [Methanocaldococcus jannaschii DSM 2661]
          Length = 618

 Score = 70.5 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 44/309 (14%), Positives = 102/309 (33%), Gaps = 40/309 (12%)

Query: 11  EREVSLSSGKACASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGN 61
           E + S  S  A   AL++ G +   I         D D S  L    +  +   N+    
Sbjct: 102 EFDYS--SVHAVL-ALKEMGIEAIIINNNPETVSTDYDTSDKLYFEPITFEEVLNIAE-R 157

Query: 62  FGEDGLVQAI---------------LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP 106
             E G +  +               L+   +    +       + D+    +++    +P
Sbjct: 158 EKEKGELLGVIVQFGGQTAINLAMKLKNAGVNILGTTPENINAAEDREEFSKLLKKLNIP 217

Query: 107 VCPS--ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164
                        ++    I  P +++P        + ++  +  +   + ++   +   
Sbjct: 218 QAEGGTAYTKEEALEIAKRIGYPVLVRPSYVLGGRAMQIVYSEDELIEYMEEAVKVSEEH 277

Query: 165 QLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            +LI++++ D IEL    + D    +    +   +       +S  ++T + P  +P +I
Sbjct: 278 PVLIDKFLEDAIELDVDAVCDGESVLIGAIMEHIEEAGV---HSGDSATVIPPQTLPKEI 334

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283
              V        +A+   G+   +  +      V+ LE N +   T     P ++   G 
Sbjct: 335 IDTVIDYTAKLARALNIVGL--LNVQYAVKDGVVYVLEANPRASRT----VPYVSKSVGI 388

Query: 284 SFRELLLWM 292
              +L   +
Sbjct: 389 PLAKLATKI 397


>gi|295397393|ref|ZP_06807482.1| pyruvate carboxylase [Aerococcus viridans ATCC 11563]
 gi|294974357|gb|EFG50095.1| pyruvate carboxylase [Aerococcus viridans ATCC 11563]
          Length = 1142

 Score = 70.5 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 46/277 (16%), Positives = 100/277 (36%), Gaps = 27/277 (9%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AV     S E EVS+   KA  S L     K  +  +D    + +A    D+  + +H 
Sbjct: 29  VAV----YSQEDEVSVHRFKADESYLLSKDKKAVEAYLDIESIIQIAK---DVNADAIHP 81

Query: 61  NFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILV 113
            +G   E+       E   I +         +  DK+++++      +P+ P     +  
Sbjct: 82  GYGFLSENTEFARRCEEEGIKFIGPSHEILDMFGDKVKAREAAKKANIPLIPGSDGPVES 141

Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSWNHGDQLLIE 169
                +       P +IK   GG   G+ V++ +  +     L + +++      +  +E
Sbjct: 142 LEEVFEFGKTAGYPIIIKAALGGGGRGMRVVRSEDEVAEQYRLAVSEATKAFGSGEAYVE 201

Query: 170 QYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEV 227
           +YV+G   +   +M D   +   +           ++        V P   + +++   +
Sbjct: 202 KYVEGPKHIEVQIMADEQGNTMHLWE-----RDCSVQRRHQKVVEVAPTVNMSMELRNRI 256

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              A     ++        +FL D      +++E+N 
Sbjct: 257 CNSARDFLDSVDYANAGTVEFLLD--GDDFYFIEVNP 291


>gi|224043097|ref|XP_002196217.1| PREDICTED: propionyl Coenzyme A carboxylase, alpha polypeptide
           [Taeniopygia guttata]
          Length = 677

 Score = 70.5 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 35/199 (17%), Positives = 66/199 (33%), Gaps = 16/199 (8%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI--LVNRFTMDS--QHLISPPYVIK 131
            + +      A     DK+ SK +  +  V   P    +V            I  P +IK
Sbjct: 109 GVTFIGPDTHAIQAMGDKIESKLLAKNAKVNTIPGFDGVVKDADEAVRIAREIGYPVMIK 168

Query: 132 PLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGDQLLIEQYVD-GIELTCGVMGDA 185
              GG   G+ +   D+             +SS+   D+LLIE+++D    +   V+ D 
Sbjct: 169 ASAGGGGKGMRIAWDDEETREGFRFSSQEAASSFG-DDRLLIEKFIDNPRHIEIQVLADK 227

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
             +   +   +        K             +  +  + +   A    +A+       
Sbjct: 228 HGNALWLNERECSIQRRNQK----VVEEAPSTFLDPETRRAMGEQAVALAKAVNYSSAGT 283

Query: 246 SDFLFDPLSRKVFWLEINV 264
            +FL D      ++LE+N 
Sbjct: 284 VEFLVDSSKN-FYFLEMNT 301


>gi|15615350|ref|NP_243653.1| acetyl-CoA carboxylase biotin carboxylase subunit [Bacillus
           halodurans C-125]
 gi|10175408|dbj|BAB06506.1| acetyl-CoA carboxylase biotin carboxylase subunit [Bacillus
           halodurans C-125]
          Length = 452

 Score = 70.5 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 78/221 (35%), Gaps = 18/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     I     I +      A +    K  +++ +   GVP+ P    
Sbjct: 77  AIHPGYGFLAENADFAEICGECNITFVGPSADAISKMGTKDVARETMKRAGVPIVPGSEG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGD 164
            I      +     I  P +IK   GG   GI V + ++ +   +       ++++    
Sbjct: 137 IIESVEDGLAVAEQIGYPVIIKATAGGGGKGIRVARNEEELRKGINITQQEAATAFG-NP 195

Query: 165 QLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            + +E+Y++    +   V+ D    V  +            K             I    
Sbjct: 196 GVYLEKYIEDFRHVEIQVLADNHGHVIHLGERDCSIQRRLQKLL----EETPSPAITEKK 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            KE+   A  A +A+   G    +F++D  +   +++E+N 
Sbjct: 252 RKEMGEAAVAAAKAVNYSGAGTVEFIYDHNNGDFYFMEMNT 292


>gi|325129517|gb|EGC52344.1| acetyl-CoA carboxylase, biotin carboxylase [Neisseria meningitidis
           OX99.30304]
          Length = 453

 Score = 70.5 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 80/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---S 110
            +H  +G   E+      +E     +         L  DK+ +K  + + GVP  P    
Sbjct: 77  AVHPGYGFLAENADFAEQVEQSGFTFIGPKPDTIRLMGDKVSAKHAMIAAGVPCVPGSDG 136

Query: 111 ILVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
            L +     +     +  P +IK   GG   G+ V++K + +   +     ++ +     
Sbjct: 137 ALPDDGEEILKIADKVGYPVIIKASGGGGGRGMRVVEKKEDLLQSVEMTKAEAGAAFGNP 196

Query: 165 QLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+Y+     +   V+ D   +   +A          L+          PA  I   
Sbjct: 197 MVYMERYLQRPRHVEIQVIADEHGNAVYLAE-----RDCSLQRRHQKVIEEAPAPFITEK 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              ++      A + IG RG    +FL+     + F++E+N 
Sbjct: 252 ERAKIGNACADACKRIGYRGAGTFEFLY--EDGEFFFIEMNT 291


>gi|328875482|gb|EGG23846.1| dihydroorotase [Dictyostelium fasciculatum]
          Length = 2221

 Score = 70.5 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 46/322 (14%), Positives = 110/322 (34%), Gaps = 51/322 (15%)

Query: 7    GISSERE---VSLSSGKACASALEDAG-------FKVSQI--DVDRSVGLVLAHLKPDLA 54
            G S E +   VS      C   L   G       F    +  D D    L    L  +  
Sbjct: 954  GSSVEFDWCAVS------CIRTLRKLGQKSIMINFNPETVSTDYDECDYLFFEELSLERV 1007

Query: 55   FNVLH--GNFGEDGLVQAI-----------LELLEIPYTHSGILASALSMDKMRSKQVVS 101
             ++    G    +G++ ++           L    +    +   +   + ++ +  +++ 
Sbjct: 1008 MDIYEVGGPDSNNGVILSVGGQIPNNLAIPLSRCNVKVLGTHPDSIDSAENRYKFSRMLD 1067

Query: 102  SCGV--PVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
            + G+  P+   +     T +    +  P +++P    S   + V+     +   L ++++
Sbjct: 1068 AIGIDQPLWKELTSVDDTKEFCETVGFPCLVRPSYVLSGAAMNVVNSSSELEAFLTEAAA 1127

Query: 160  WNHGDQLLIEQYVDGIEL----TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215
             +    ++I +++   +          G   L      V  +  +S        ++T V 
Sbjct: 1128 VSRDYPVVISKFIQEAKEIEIDAVADNGQIVLFAISEHVENAGVHS-------GDATIVC 1180

Query: 216  PA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274
            PA  +  +   +++  A     A+   G     F+    + ++  +E N++      S F
Sbjct: 1181 PAQDLDANTIAKIEETARKIAAALAVSGPFNIQFI--AKNNEIKVIECNLRC---SRS-F 1234

Query: 275  PEMAAYAGYSFRELLLWMVEDA 296
            P ++      F EL   ++  A
Sbjct: 1235 PFVSKTLNVDFIELATKIIIQA 1256



 Score = 58.6 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 53/291 (18%), Positives = 107/291 (36%), Gaps = 41/291 (14%)

Query: 6   GGIS----SEREVSLSSGKACASALEDAGFKVSQIDVD---------------------R 40
           GG+S     E + S   G     AL++ G K   I+ +                      
Sbjct: 408 GGLSIGQAGEFDYS---GSQAIKALKEEGIKTVLINPNIATVQTSPGLADKVYFLPVNAA 464

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRS 96
           SV  V+ + KPD       G    +  ++     ILE   +    + I     + D+   
Sbjct: 465 SVTKVIINEKPDGILVTFGGQTALNCGIELYKSGILEKYNVKVMGTPIDTIISTEDRGIF 524

Query: 97  KQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154
            + ++     + PS   N    +++S   I  P +++       LG       + +    
Sbjct: 525 AEKLAEINERIAPSEACNTMEESLESAKKIGYPVIVRAAYCLGGLGSGFANNPEELTA-- 582

Query: 155 LQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTH 213
           L + +     Q+LIE+ + G  E+   V+ D+  +   I V   + +   L   +  S  
Sbjct: 583 LVTEALATSTQVLIEKSLKGWKEIEYEVLRDSHDN--CITVCNMENFD-PLGIHTGESIV 639

Query: 214 VLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
           V P++ +    Y+ ++ +A    + +G  G     +  +P + +   +E+N
Sbjct: 640 VAPSQTLTDREYQMLREVAIKTVRHLGVVGECNIQYALNPDNEEYCIIEVN 690


>gi|325127519|gb|EGC50445.1| acetyl-CoA carboxylase, biotin carboxylase [Neisseria meningitidis
           N1568]
          Length = 453

 Score = 70.5 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 80/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---S 110
            +H  +G   E+      +E     +         L  DK+ +K  + + GVP  P    
Sbjct: 77  AVHPGYGFLAENADFAEQVEQSGFTFIGPKPDTIRLMGDKVSAKHAMIAAGVPCVPGSDG 136

Query: 111 ILVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
            L +     +     +  P +IK   GG   G+ V++K + +   +     ++ +     
Sbjct: 137 ALPDDGEEILKIADKVGYPVIIKASGGGGGRGMRVVEKKEDLLQSVEMTKAEAGAAFGNP 196

Query: 165 QLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+Y+     +   V+ D   +   +A          L+          PA  I   
Sbjct: 197 MVYMERYLQRPRHVEIQVIADEHGNAVYLAE-----RDCSLQRRHQKVIEEAPAPFITEK 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              ++      A + IG RG    +FL+     + F++E+N 
Sbjct: 252 ERAKIGNACADACKRIGYRGAGTFEFLY--EDGEFFFIEMNT 291


>gi|302872000|ref|YP_003840636.1| phosphoribosylaminoimidazole carboxylase, ATPase subunit
           [Caldicellulosiruptor obsidiansis OB47]
 gi|302574859|gb|ADL42650.1| phosphoribosylaminoimidazole carboxylase, ATPase subunit
           [Caldicellulosiruptor obsidiansis OB47]
          Length = 403

 Score = 70.5 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 41/197 (20%), Positives = 73/197 (37%), Gaps = 16/197 (8%)

Query: 73  ELLEIPY-THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIK 131
           +L +  Y  +       +  DK + KQ+  +  +PV     V             P V K
Sbjct: 108 DLYDKGYHIYPSPYCLEIIQDKFKQKQMFKNANLPVPRFEKVTHLNASFFEKFGFPCVQK 167

Query: 132 PLKGG-SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDV 189
             KGG    G++VIK  + +   L   S         +E+ VD   EL   V  +   DV
Sbjct: 168 ASKGGYDGRGVVVIKSKEDLNKVLETES--------FVEELVDIKKELAVMVARNKRGDV 219

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
               V +  F     + +++    V PA+I   I +  + +A    +A+   G+   +  
Sbjct: 220 KSYPVVEMVF----EQSANILDFLVAPARIDEKIAQRAREIAIKVVEALDGVGVFGVELF 275

Query: 250 FDPLSRKVFWLEINVQP 266
                 ++   E+  +P
Sbjct: 276 LTK-DDEILINEVAPRP 291


>gi|291613525|ref|YP_003523682.1| carbamoyl-phosphate synthase, large subunit [Sideroxydans
           lithotrophicus ES-1]
 gi|291583637|gb|ADE11295.1| carbamoyl-phosphate synthase, large subunit [Sideroxydans
           lithotrophicus ES-1]
          Length = 1072

 Score = 70.5 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 48/278 (17%), Positives = 101/278 (36%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVDRSVGL------------VLAHLKPDLAFN 56
           SG     AL + G++V  +         D + +               ++A  KPD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPNMADATYIEPITWQMVEKIIAKEKPDAILP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      +LE   +    +   A  ++ D+ + KQ ++  G+    S +
Sbjct: 89  TMGGQTALNCALDLAKHGVLEKYNVEMIGASRDAIDMAEDREKFKQAMTRIGLASARSAI 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     +  Q ++  P +I+P       G  +    +       +    +   +LLIE+
Sbjct: 149 AHSMEEALQVQQVMGFPTIIRPSFTMGGSGGGIAYNREEFVEICERGLEASPTRELLIEE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + +   I   ++ D           +S  V PA+ +    Y+ +
Sbjct: 209 SLLGWKEYEMEVVRDRNDNCIIICSIENLDPMGVHT----GDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P   ++  +E+N 
Sbjct: 265 RDASLAVLREIGVETGGSNVQFSINPDDGRMVVIEMNP 302



 Score = 52.8 bits (126), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 25/196 (12%), Positives = 69/196 (35%), Gaps = 12/196 (6%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQHLISPPYVIKPL 133
            +P   +      ++ D+ R + ++    +   P+   +     +     I  P V++P 
Sbjct: 652 GVPIIGTTPDMIDMAEDRARFQAMLRELNLKQPPNRTASNVADGVAGAAEIGYPLVMRPS 711

Query: 134 KGGSSLGIIVIKKDQSIPL----DLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
                  + +I     +          S ++     +L+++++ D IE+    + D    
Sbjct: 712 NVLGGRAMEIIHAQSDLERYMRDAEEMSKTYPERMPILLDRFLNDAIEVDVDAVSDGKQV 771

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           +    +   +       +S  ++  + P  +   +  E++R      +++   G+    F
Sbjct: 772 IIGGIMEHIEQAGV---HSGDSACSLPPYSLSAKLQDELRRQTVAMAKSLNVVGLMNVQF 828

Query: 249 LFDPLSRKVFWLEINV 264
                   V+ LE+N 
Sbjct: 829 AI--QGETVYVLEVNP 842


>gi|226290917|gb|EEH46345.1| carbamoyl-phosphate synthase arginine-specific large chain
           [Paracoccidioides brasiliensis Pb18]
          Length = 1181

 Score = 70.5 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 56/291 (19%), Positives = 107/291 (36%), Gaps = 41/291 (14%)

Query: 6   GGIS----SEREVSLSSGKACASALEDAGF--------------------KVSQIDVDRS 41
           GG+S     E + S   G     AL++AG                     +V  + V   
Sbjct: 113 GGLSIGQAGEFDYS---GSQALKALKEAGVKSVLINPNIATIQTDHKLADEVYYLPVTPE 169

Query: 42  -VGLVLAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRS 96
            V  V+   +PD  F    G    +  VQ     + E   +    + I    +S D+   
Sbjct: 170 YVTHVIEREQPDGIFLTFGGQTALNLGVQLNRMGVFERHGVKVLGTSIRTLEVSEDRDLF 229

Query: 97  KQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154
            + ++   +P+  S+ VN     +++   I  P +++       LG       + +    
Sbjct: 230 SKALNEINIPIAESVAVNSVDEALEAADKIGYPIIVRSAYALGGLGSGFASNAEELK--N 287

Query: 155 LQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTH 213
           L S S     Q+L+E+ + G  E+   V+ DA+ +   I V   + +   L   + +S  
Sbjct: 288 LSSRSLTLAPQILVEKSLKGWKEVEYEVVRDAANN--CITVCNMENFD-PLGIHTGDSIV 344

Query: 214 VLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
           V P++ +  + Y  ++  A    + +G  G     +   P       +E+N
Sbjct: 345 VAPSQTLSDEEYHMLRTAAIKIVRHLGVVGECNVQYALQPDGLDYRVIEVN 395



 Score = 56.7 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 27/173 (15%), Positives = 63/173 (36%), Gaps = 6/173 (3%)

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVI 130
           E        +       + D+ +  Q++ S GV       ++           +  P ++
Sbjct: 743 ETGGAKVLGTDPKDIDKAEDRHKFSQILDSIGVDQPAWKELSSVADAEAFADSVGYPVLV 802

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190
           +P    S   + VI+    +   L+ +S+ +    ++I ++++G E    +  DA     
Sbjct: 803 RPSYVLSGAAMSVIRSHDELNEKLVSASAVSPDHPVVITKFIEGAEE---IDVDAVASAG 859

Query: 191 EIAVPKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
           ++ +     +       S ++T V  P  +   I   V+ +A    +A    G
Sbjct: 860 KLIIHAVSEHVEAAGVHSGDATLVLPPVNLDEQIMARVKDIAEKVAKAWNITG 912


>gi|295665210|ref|XP_002793156.1| carbamoyl-phosphate synthase arginine-specific large chain
           [Paracoccidioides brasiliensis Pb01]
 gi|226278070|gb|EEH33636.1| carbamoyl-phosphate synthase arginine-specific large chain
           [Paracoccidioides brasiliensis Pb01]
          Length = 1181

 Score = 70.5 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 56/291 (19%), Positives = 107/291 (36%), Gaps = 41/291 (14%)

Query: 6   GGIS----SEREVSLSSGKACASALEDAGF--------------------KVSQIDVDRS 41
           GG+S     E + S   G     AL++AG                     +V  + V   
Sbjct: 113 GGLSIGQAGEFDYS---GSQALKALKEAGVKSVLINPNIATIQTDHKLADEVYYLPVTPE 169

Query: 42  -VGLVLAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRS 96
            V  V+   +PD  F    G    +  VQ     + E   +    + I    +S D+   
Sbjct: 170 YVTHVIEREQPDGIFLTFGGQTALNLGVQMNRMGVFERHGVKVLGTSIRTLEVSEDRDLF 229

Query: 97  KQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154
            + ++   +P+  S+ VN     +++   I  P +++       LG       + +    
Sbjct: 230 SKALNEINIPIAESVAVNSVDEALEAADKIGYPIIVRSAYALGGLGSGFASNAEELK--N 287

Query: 155 LQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTH 213
           L S S     Q+L+E+ + G  E+   V+ DA+ +   I V   + +   L   + +S  
Sbjct: 288 LSSRSLTLAPQILVEKSLKGWKEVEYEVVRDAANN--CITVCNMENFD-PLGIHTGDSIV 344

Query: 214 VLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
           V P++ +  + Y  ++  A    + +G  G     +   P       +E+N
Sbjct: 345 VAPSQTLSDEEYHMLRTAAIKIVRHLGVVGECNVQYALQPDGLDYRVIEVN 395



 Score = 56.3 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 31/201 (15%), Positives = 70/201 (34%), Gaps = 16/201 (7%)

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVI 130
           E        +       + ++ +  Q++ S GV       ++           +  P ++
Sbjct: 743 ETGGAKVLGTDPKDIDKAENRHKFSQILDSIGVDQPAWKELSSVADAEAFADSVGYPVLV 802

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190
           +P    S   + VI+    +   L+ +S+ +    ++I ++++G E    +  DA     
Sbjct: 803 RPSYVLSGAAMSVIRSHDELNEKLVSASAVSPDHPVVITKFIEGAEE---IDVDAVASAG 859

Query: 191 EIAVPKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRG-----IS 244
           ++ +     +       S ++T V  P  +   I   V+ +A    +A    G     I 
Sbjct: 860 KLIIHAVSEHVEAAGVHSGDATLVLPPVNLDEQIMARVKDIAEKVAKAWNITGPFNMQII 919

Query: 245 RSDFLFDPLSRKVFW--LEIN 263
           + D   D          +E N
Sbjct: 920 KVD---DLEGGDPQLKVIECN 937


>gi|225679204|gb|EEH17488.1| carbamoyl-phosphate synthase arginine-specific large chain
           [Paracoccidioides brasiliensis Pb03]
          Length = 1181

 Score = 70.5 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 56/291 (19%), Positives = 107/291 (36%), Gaps = 41/291 (14%)

Query: 6   GGIS----SEREVSLSSGKACASALEDAGF--------------------KVSQIDVDRS 41
           GG+S     E + S   G     AL++AG                     +V  + V   
Sbjct: 113 GGLSIGQAGEFDYS---GSQALKALKEAGVKSVLINPNIATIQTDHKLADEVYYLPVTPE 169

Query: 42  -VGLVLAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRS 96
            V  V+   +PD  F    G    +  VQ     + E   +    + I    +S D+   
Sbjct: 170 YVTHVIEREQPDGIFLTFGGQTALNLGVQLNRMGVFERHGVKVLGTSIRTLEVSEDRDLF 229

Query: 97  KQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154
            + ++   +P+  S+ VN     +++   I  P +++       LG       + +    
Sbjct: 230 SKALNEINIPIAESVAVNSVDEALEAADKIGYPIIVRSAYALGGLGSGFASNAEELK--N 287

Query: 155 LQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTH 213
           L S S     Q+L+E+ + G  E+   V+ DA+ +   I V   + +   L   + +S  
Sbjct: 288 LSSRSLTLAPQILVEKSLKGWKEVEYEVVRDAANN--CITVCNMENFD-PLGIHTGDSIV 344

Query: 214 VLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
           V P++ +  + Y  ++  A    + +G  G     +   P       +E+N
Sbjct: 345 VAPSQTLSDEEYHMLRTAAIKIVRHLGVVGECNVQYALQPDGLDYRVIEVN 395



 Score = 56.7 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 27/173 (15%), Positives = 63/173 (36%), Gaps = 6/173 (3%)

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVI 130
           E        +       + D+ +  Q++ S GV       ++           +  P ++
Sbjct: 743 ETGGAKVLGTDPKDIDKAEDRHKFSQILDSIGVDQPAWKELSSVADAEAFADSVGYPVLV 802

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190
           +P    S   + VI+    +   L+ +S+ +    ++I ++++G E    +  DA     
Sbjct: 803 RPSYVLSGAAMSVIRSHDELNEKLVSASAVSPDHPVVITKFIEGAEE---IDVDAVASAG 859

Query: 191 EIAVPKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
           ++ +     +       S ++T V  P  +   I   V+ +A    +A    G
Sbjct: 860 KLIIHAVSEHVEAAGVHSGDATLVLPPVNLDEQIMARVKDIAEKVAKAWNITG 912


>gi|58268652|ref|XP_571482.1| pyruvate carboxylase [Cryptococcus neoformans var. neoformans
           JEC21]
 gi|57227717|gb|AAW44175.1| pyruvate carboxylase, putative [Cryptococcus neoformans var.
           neoformans JEC21]
          Length = 1103

 Score = 70.5 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 79/221 (35%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
           ++H  +G   E+      +E   I +            DK +++ +    GVPV P    
Sbjct: 130 MIHPGYGFLSENAEFAKKVEDAGIAFIGPRPETIDALGDKTKARTLAIKTGVPVVPGTPG 189

Query: 114 NRFTMDSQHLI----SPPYVIKPLKGGSSLGIIVIKK----DQSIPLDLLQSSSWNHGDQ 165
              + D           P +IK   GG   G+ V++      +S    + ++ S      
Sbjct: 190 PVESYDKAAAFIEKYGFPVIIKAAMGGGGRGMRVVRDQESFKESFERAVSEAKSAFGDGT 249

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           + IE+++D    +   ++ D   +               ++        V PA  +   +
Sbjct: 250 VFIERFLDRPRHIEVQLLADGEGNCV-----HLFERDCSVQRRHQKVVEVAPAPHLEESV 304

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +   A     A+  R    ++FL D  +R  +++EIN 
Sbjct: 305 RQAILSDALKLADAVKYRNAGTAEFLVDQQNRH-YFIEINP 344


>gi|226941819|ref|YP_002796893.1| CarB [Laribacter hongkongensis HLHK9]
 gi|226716746|gb|ACO75884.1| CarB [Laribacter hongkongensis HLHK9]
          Length = 1068

 Score = 70.5 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 28/196 (14%), Positives = 77/196 (39%), Gaps = 8/196 (4%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           LE   +P   +       + D+ R +++++  G+   P+      +  +     I  P V
Sbjct: 648 LEANGVPIIGTTPDMIDAAEDRERFQKLLNELGLKQPPNRTARAPQEALQLAEEIGYPLV 707

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++ +   +   + ++   ++   +L+++++ D IE+    + D +  
Sbjct: 708 VRPSYVLGGRAMEIVHERADLERYMREAVKVSNDSPVLLDRFLNDAIEVDVDAISDGTDV 767

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           V    +   +       +S  ++  + P  +   I  E++R      +A+   G+    F
Sbjct: 768 VIGGIMQHVEQAGV---HSGDSACSLPPYSLFPAIQDEIRRQTVAMARALNVVGLMNVQF 824

Query: 249 LFDPLSRKVFWLEINV 264
                   ++ LE+N 
Sbjct: 825 AV--QGDTIYVLEVNP 838



 Score = 69.8 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 46/278 (16%), Positives = 99/278 (35%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +              DV        + V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYKVILVNSNPATIMTDPNMADVTYIEPITWQMVAKIIEKERPDAVLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      +L+   +    + + A   + D+ + K  +   G+    S +
Sbjct: 89  TMGGQTALNCALDLARHGVLDQFGVELIGASVEAIDKAEDRDKFKLAMQKIGLECSRSKV 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     +  Q  +  P +I+P       G  +    +       +    +   +LLIE+
Sbjct: 149 AHSMEEALTIQAEVGFPTIIRPSFTMGGSGGGIAYNREEFLAICERGFEASPTHELLIEE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + +   I   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SMLGWKEYEMEVVRDRNDNCIIICSIEN----FDPMGVHTGDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F   P + ++  +E+N 
Sbjct: 265 RNASLAVLREIGVDTGGSNVQFAVQPDTGRLIVIEMNP 302


>gi|159045179|ref|YP_001533973.1| carbamoyl phosphate synthase large subunit [Dinoroseobacter shibae
           DFL 12]
 gi|157912939|gb|ABV94372.1| carbamoyl-phosphate synthase large chain [Dinoroseobacter shibae
           DFL 12]
          Length = 1105

 Score = 70.5 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 42/268 (15%), Positives = 97/268 (36%), Gaps = 35/268 (13%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAI---- 71
           AL +AG++   +         D D S  L    L  +    +L     E+G +  +    
Sbjct: 598 ALTEAGYETIMVNCNPETVSTDYDTSDRLYFEPLTFEHVMEILRAEQ-ENGTLHGVIVQF 656

Query: 72  -----------LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTM 118
                      LE   IP   +   A  L+ D+ R + +V+  G+    + +   +    
Sbjct: 657 GGQTPLKLANALEAEGIPILGTTPDAIDLAEDRERFQALVNDLGLKQPHNAIASTDAEAF 716

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IEL 177
            +   I  P VI+P        + +++    +   + ++   +    +L++ Y+ G +EL
Sbjct: 717 AAAGDIGFPLVIRPSYVLGGRAMEIVRDMGQLERYIAEAVVVSGDSPVLLDSYLAGAVEL 776

Query: 178 TC-GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
               +    ++ V  I             +S  ++  + P  +  D+   ++       +
Sbjct: 777 DVDALCDGENVHVAGI----MQHIEEAGVHSGDSACSLPPYSLSDDVLARIRVQTEALAR 832

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINV 264
           A+  +G+    F       +++ +E+N 
Sbjct: 833 ALRVKGLMNVQFAI--KDDEIYLIEVNP 858



 Score = 54.0 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 44/278 (15%), Positives = 92/278 (33%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D                V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPGLADATYIEPITPEIVAKIIEKERPDALLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G  G +  +      +L    +    +   A  ++ D+   ++ +   G+    + +
Sbjct: 89  TMGGQTGLNTSLALEEMGVLAKYGVEMIGAKREAIEMAEDRKLFREAMDRLGIENPRATI 148

Query: 113 VNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  M +   I  P +I+P       G  V                 +  +Q+LI++
Sbjct: 149 ATTMDECMAALDDIGLPAIIRPAFTLGGTGGGVAYNRDDYEHFCKSGLDASPVNQILIDE 208

Query: 171 YVDG-IELTCGVMGDASL-DVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEV 227
            + G  E    V+ D +   +   A+   D           +S  V PA  +    Y+ +
Sbjct: 209 SLLGWKEFEMEVVRDKADNAIIVCAIENVDPMGVHT----GDSITVAPALTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   +  +P   ++  +E+N 
Sbjct: 265 RNGSIAVLREIGVETGGSNVQWAVNPADGRMVVIEMNP 302


>gi|327403182|ref|YP_004344020.1| formate-dependent phosphoribosylglycinamide formyltransferase
           [Fluviicola taffensis DSM 16823]
 gi|327318690|gb|AEA43182.1| formate-dependent phosphoribosylglycinamide formyltransferase
           [Fluviicola taffensis DSM 16823]
          Length = 388

 Score = 70.5 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 49/286 (17%), Positives = 95/286 (33%), Gaps = 55/286 (19%)

Query: 19  GKACASALEDAGFKVSQIDVDRS--------------------VGLVLAHLKPDLAFNVL 58
           GK    AL+  G  V  +D   +                    +  ++A  +PDL    +
Sbjct: 14  GKELVIALQRLGQTVIAVDSYENAPAMQVADSFEVINMLDAVSLDAIVAKHQPDLIVPEI 73

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMD-----KMRSKQVVSSCGVPVCPSILV 113
                E           E       ++ SA + +     K          GV     +  
Sbjct: 74  EAIRTE--------RFYEYEKMGIQVIPSAKAANFTMNRKAIRDLAAKDLGVKTANYLYA 125

Query: 114 NRFTMDSQHLI--SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD--QLLIE 169
                  + ++    P V+KPL   S  G  VI+  + I      +   + GD  ++++E
Sbjct: 126 KTGEEFEKAVLDIGIPCVVKPLMSSSGKGQSVIRSKEEISKAWTYAIEGSRGDLKEVIVE 185

Query: 170 QYV----DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
           +++    +   LT       +L    I   + +   Y+  +         P  +  +  K
Sbjct: 186 EFIPFDYEITLLTVTQNNGETLFCAPIG-HRQERGDYQESW--------QPMPMNSEHLK 236

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP---GM 268
           E Q +A    +A+G  G+   +F         ++ E++ +P   GM
Sbjct: 237 EAQEMAAKVTKALGGSGLWGVEFFITKEGA--YFSELSPRPHDTGM 280


>gi|323492071|ref|ZP_08097233.1| acetyl-CoA carboxylase biotin carboxylase subunit [Vibrio
           brasiliensis LMG 20546]
 gi|323313632|gb|EGA66734.1| acetyl-CoA carboxylase biotin carboxylase subunit [Vibrio
           brasiliensis LMG 20546]
          Length = 447

 Score = 70.5 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 36/222 (16%), Positives = 80/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      +E     +         +  DK+ +   +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAEQVERSGFIFVGPKADTIRMMGDKVSAITAMKKAGVPCVPGSDG 136

Query: 114 NRFTMDSQHL-----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
                ++++      I  P +IK   GG   G+ V++ +  +   +     ++ +  + D
Sbjct: 137 PLDDDEAKNKAHAKRIGYPVIIKASGGGGGRGMRVVRSEGELVEAIAMTRAEAKAAFNND 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E++++    +   V+ D       +            K          PA  I  +
Sbjct: 197 MVYMEKFLENPRHVEVQVIADGQGGAIHLGERDCSMQRRHQK-----VVEEAPAPGITEE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + K +      A   IG RG    +FL+   + + +++E+N 
Sbjct: 252 MRKYIGERCTRACLEIGYRGAGTFEFLY--ENGEFYFIEMNT 291


>gi|288926330|ref|ZP_06420254.1| phosphoribosylglycinamide formyltransferase 2 [Prevotella buccae
           D17]
 gi|288336935|gb|EFC75297.1| phosphoribosylglycinamide formyltransferase 2 [Prevotella buccae
           D17]
          Length = 387

 Score = 70.5 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 40/246 (16%), Positives = 77/246 (31%), Gaps = 23/246 (9%)

Query: 33  VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGE---DGLVQAILELLEIPYTHSGILASAL 89
            S +D D ++  V+   +PD+    +     E   D       E   I    S    +  
Sbjct: 42  FSMLDGD-ALEAVVRKHRPDIIVPEIEAIRTERLFD------FEKAGIQVVPSARAVNYT 94

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVIKKD 147
              +           +          F     +   I  P V+KPL   S  G   +  D
Sbjct: 95  MNRRAIRDLAAKELRLRTAKYFYAKTFDEFRKAADEIGFPCVVKPLMSSSGHGQSYVHGD 154

Query: 148 QSIPLDLLQSSSWNHGD--QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205
             +      +   + GD  +++IE+++D       +        T    P          
Sbjct: 155 GELEQAFRDAMEGSRGDVKEIIIEEFIDFDSEFTLLTVTQKQGPTLFCPPIGHIQ----- 209

Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                     P ++P +  K  + +A    +A+   G+   +F       +V + E++ +
Sbjct: 210 KGGDYRESWQPFRLPDEALKAAEDMARKVTEALTGCGLWGVEFFLSRQ-GEVIFSELSPR 268

Query: 266 P---GM 268
           P   GM
Sbjct: 269 PHDTGM 274


>gi|301107684|ref|XP_002902924.1| propionyl coenzyme A carboxylase (Pi-PCC1) [Phytophthora infestans
           T30-4]
 gi|262098042|gb|EEY56094.1| propionyl coenzyme A carboxylase (Pi-PCC1) [Phytophthora infestans
           T30-4]
          Length = 764

 Score = 70.5 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 44/220 (20%), Positives = 82/220 (37%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      LE + + +   G  A     DK+ SKQ+    GV   P  L 
Sbjct: 109 AVHPGYGFLSENKDFCEALEAIGVAFIGPGHEAIQAMGDKIESKQLAMDAGVNTIPGFLG 168

Query: 114 NRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQS----IPLDLLQSSSWNHGDQ 165
              T D      H I  P +IK   GG   G+ V   D+       L   +++S    D+
Sbjct: 169 EIDTPDEAVKVAHEIGYPVMIKASAGGGGKGMRVAYNDEEVRMGYRLSKEEAASSFGDDR 228

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+++ D   +   ++ D+  +V  +   +        K             +  +  
Sbjct: 229 MFLEKFIEDPRHIEIQLIADSHGNVVALPERECSIQRRNQK----VVEEAPSVLLDPETR 284

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             + + A +  + +G       +FL D      ++LE+N 
Sbjct: 285 LAMGKQAAMLARKVGYVSAGTVEFLCDKHKN-FYFLEMNT 323


>gi|107021681|ref|YP_620008.1| acetyl-CoA carboxylase biotin carboxylase subunit [Burkholderia
           cenocepacia AU 1054]
 gi|116688627|ref|YP_834250.1| acetyl-CoA carboxylase biotin carboxylase subunit [Burkholderia
           cenocepacia HI2424]
 gi|170731926|ref|YP_001763873.1| acetyl-CoA carboxylase biotin carboxylase subunit [Burkholderia
           cenocepacia MC0-3]
 gi|105891870|gb|ABF75035.1| acetyl-CoA carboxylase, biotin carboxylase [Burkholderia
           cenocepacia AU 1054]
 gi|116646716|gb|ABK07357.1| acetyl-CoA carboxylase, biotin carboxylase [Burkholderia
           cenocepacia HI2424]
 gi|169815168|gb|ACA89751.1| acetyl-CoA carboxylase, biotin carboxylase [Burkholderia
           cenocepacia MC0-3]
          Length = 455

 Score = 70.5 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 79/222 (35%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H  +G   E+      +E     +         +  DK+ +KQ +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAERVEQSGFTFIGPRPETIRMMGDKVTAKQTMIKTGVPCVPGSEG 136

Query: 113 ----VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
                 +  +     I  P +IK   GG   G+ V+  + ++   +     ++       
Sbjct: 137 ALPDDPKEIVKIARTIGYPVIIKAAGGGGGRGMRVVHTEAALVNAVNMTREEAGRAFGNP 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
           Q+ +E++++    +   V+ DA  +   +            K          PA  IP  
Sbjct: 197 QVYMEKFLENPRHIEIQVLSDAYKNAIWLGERDCSMQRRHQK-----VIEEAPAPGIPRR 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +   +      A + +G  G    +FL+   + + +++E+N 
Sbjct: 252 LIDRIGDRCADACKKMGYLGAGTFEFLY--ENGEFYFIEMNT 291


>gi|302893675|ref|XP_003045718.1| hypothetical protein NECHADRAFT_34114 [Nectria haematococca mpVI
           77-13-4]
 gi|256726645|gb|EEU40005.1| hypothetical protein NECHADRAFT_34114 [Nectria haematococca mpVI
           77-13-4]
          Length = 488

 Score = 70.5 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 45/273 (16%), Positives = 93/273 (34%), Gaps = 30/273 (10%)

Query: 11  EREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNV----LHGNFG--- 63
           E  VS    +  + A  D    +  +D       +   L  D A N     +H  +G   
Sbjct: 59  EDAVS----RHVSEA--DEAINLGSMDNTDGNPFLNIQLLVDTALNAGADAIHPGYGYLS 112

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPSILVNRFTMDSQ 121
           E+      +    + +      A     DK  +K+ +S     VP+ P    +   +  +
Sbjct: 113 ENSRFADAVRAAGMIFIGPSSSAINTLGDKREAKEYLSEHEPSVPLIPGFTGSSSGIQLE 172

Query: 122 HL------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD----QLLIEQY 171
            L      I  P +IK   GG   G+ +++   ++  +  ++ S           ++E+Y
Sbjct: 173 DLQVQAERIGLPVMIKASAGGGGKGLRIVRDMSALESEFNRAQSEAQRSFGLSDCIMEKY 232

Query: 172 VD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
           ++ G  +   +MGD+   V  +            K             +     + +   
Sbjct: 233 IEAGKHVEVQIMGDSHGKVISLWERDCSVQRRHQK----VVEESPCPWLNQSQREAMCAE 288

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
           A    + +   G    +F+ D  +   ++LE+N
Sbjct: 289 AVKIGELLKYEGAGTVEFILDVATGNFYFLEVN 321


>gi|125623920|ref|YP_001032403.1| carbamoyl phosphate synthase large subunit [Lactococcus lactis
           subsp. cremoris MG1363]
 gi|146345385|sp|O32771|CARB_LACLM RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|124492728|emb|CAL97683.1| carbamoyl-phosphate synthase, large subunit [Lactococcus lactis
           subsp. cremoris MG1363]
 gi|300070694|gb|ADJ60094.1| carbamoyl phosphate synthase large subunit [Lactococcus lactis
           subsp. cremoris NZ9000]
          Length = 1064

 Score = 70.5 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 46/268 (17%), Positives = 100/268 (37%), Gaps = 30/268 (11%)

Query: 25  ALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNVLHGNFG 63
           AL++ G++V  ++        DR +                +L   +PD     L G  G
Sbjct: 36  ALKEEGYEVVLVNSNPATIMTDREIADTVYIEPITLEFVSKILRKERPDALLPTLGGQTG 95

Query: 64  EDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFT 117
            +  ++     ILE L +    + + A   + D+   K++  S   P+C S +       
Sbjct: 96  LNMAMELSKTGILEELNVELLGTKLSAIDQAEDRELFKELCESINEPLCASDIATTVEEA 155

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IE 176
           ++    I  P +++P       G  +   ++ +   +      +   Q LIE+ + G  E
Sbjct: 156 INIADKIGYPIIVRPAFTMGGTGGGICDTEEELREIVANGLKLSPVTQCLIEESIAGYKE 215

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +   VM D++ +   I V   + +     ++  +        +  + Y+ ++  +    +
Sbjct: 216 IEYEVMRDSADNA--IVVCNMENFDPVGVHTGDSIVFAPSQTLSDNEYQMLRDASLNIIR 273

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINV 264
           A+   G        DP S +   +E+N 
Sbjct: 274 ALKIEGGCNVQLALDPNSYEYRVIEVNP 301



 Score = 66.3 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 30/228 (13%), Positives = 76/228 (33%), Gaps = 19/228 (8%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYV 129
           L    +    + +     + D+   ++ +    +P  P            + + I  P +
Sbjct: 646 LSKAGVKILGTQVEDLDRAEDRDLFEKALQDLDIPQPPGATATNEEEAVANANKIGYPVL 705

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS--- 186
           I+P        + +I  ++ +   + ++   +    +L++ Y+ G E     + D     
Sbjct: 706 IRPSFVLGGRAMEIINNEKDLRDYMNRAVKASPEHPVLVDSYLQGQECEVDAICDGKEVL 765

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISR 245
           L      + ++  +S        +S  V P   +   I   +          + C G+  
Sbjct: 766 LPGIMEHIERAGVHS-------GDSMAVYPPQNLSQAIIDTIVDYTKRLAIGLNCIGMMN 818

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
             F+      +V+ +E+N +   T     P ++        +L   M+
Sbjct: 819 IQFVI--YEEQVYVIEVNPRASRT----VPFLSKVTNIPMAQLATQMI 860


>gi|86147368|ref|ZP_01065681.1| carbamoyl-phosphate synthase large subunit [Vibrio sp. MED222]
 gi|85834796|gb|EAQ52941.1| carbamoyl-phosphate synthase large subunit [Vibrio sp. MED222]
          Length = 1076

 Score = 70.5 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 48/278 (17%), Positives = 98/278 (35%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D D              V  ++A  KPD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPDMADATYIEPIQWEVVRNIIAKEKPDAVLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV--PVCPS 110
            + G    +  +      +LE   +    +   A   + D+ R  + + + G+  P   +
Sbjct: 89  TMGGQTALNCALDLEKYGVLEEFGVEMIGATADAIDKAEDRSRFDKAMKAIGLECPTADT 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                     Q ++  P +I+P       G  +    +       +    +  ++LLI++
Sbjct: 149 AKTMEEAYKVQEMVGFPCIIRPSFTMGGTGGGIAYNKEEFEEICRRGLDLSPTNELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + + +   A+   D           +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCAIENFDPMGIHT----GDSITVAPAQTLTDKEYQLM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P   ++  +E+N 
Sbjct: 265 RNASLAVLREIGVETGGSNVQFGINPKDGRMVIIEMNP 302



 Score = 61.7 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 33/197 (16%), Positives = 76/197 (38%), Gaps = 10/197 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH--LISPPYV 129
           LE   +P   +   A   + D+ R +  V   G+    +  V       +    I  P V
Sbjct: 653 LEAAGVPIIGTSPDAIDRAEDRERFQVAVDRLGLLQPENATVTTMEQAVEKSREIGFPLV 712

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  +Q +     ++ S ++   +L++ ++ D +E+    + D    
Sbjct: 713 VRPSYVLGGRAMEIVYDEQDLRRYFNEAVSVSNESPVLLDSFLDDAVEVDVDAICDGERV 772

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           V    +   +    +    S +S   LPA  +  +I   ++         +G RG+  + 
Sbjct: 773 VIAGIMEHIE----QAGVHSGDSACSLPAYTLSQEIQDVMREQVEKLAFELGVRGLMNTQ 828

Query: 248 FLFDPLSRKVFWLEINV 264
           F     + +V+ +E+N 
Sbjct: 829 FAV--KNNQVYLIEVNP 843


>gi|260462352|ref|ZP_05810560.1| Carbamoyl-phosphate synthase L chain ATP-binding [Mesorhizobium
           opportunistum WSM2075]
 gi|259031846|gb|EEW33114.1| Carbamoyl-phosphate synthase L chain ATP-binding [Mesorhizobium
           opportunistum WSM2075]
          Length = 654

 Score = 70.5 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 36/204 (17%), Positives = 70/204 (34%), Gaps = 19/204 (9%)

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM----DSQHLISPPYVI 130
             + +      +      K  +K+++   GVPV P        +         I  P +I
Sbjct: 98  AGLIFIGPSAASIRAMGLKDAAKRLMEKAGVPVVPGYHGEAQEIVLLASKAREIGYPVLI 157

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGDQLLIEQYVD-GIELTCGVMGDA 185
           K   GG   G+  ++        L     ++ +    D++L+E+YVD    +   V GD 
Sbjct: 158 KARAGGGGKGMRRVEHPDDFSEALSSARREAKAAFGDDRVLVEKYVDKPRHIEVQVFGDN 217

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGIS 244
             +   +            +          PA  +   + K +   A  A +AI   G  
Sbjct: 218 FGNAVHLYE-----RDCSAQRRHQKVIEEAPAPGMTPALRKAMTDAAVKAAKAISYSGAG 272

Query: 245 RSDFLFDPLSR----KVFWLEINV 264
             +F+ D        + +++E+N 
Sbjct: 273 TIEFIVDASQGLQADRFWFMEMNT 296


>gi|228949279|ref|ZP_04111543.1| hypothetical protein bthur0007_53960 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228810405|gb|EEM56762.1| hypothetical protein bthur0007_53960 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
          Length = 399

 Score = 70.5 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 44/242 (18%), Positives = 99/242 (40%), Gaps = 30/242 (12%)

Query: 34  SQIDVDRSVGLVLAHLK--PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSM 91
            +++   +   +L       D    +  G   E   V+ + E L I         +    
Sbjct: 47  IKVEPIETTVHMLKKDGYSFDRIITIQEGYLEE---VEILCEKLNIKNIM--FETAKNFR 101

Query: 92  DKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI- 150
           DK   K++     +P     L+    +  +++IS P V+KPL G  S+G+  ++    + 
Sbjct: 102 DKYFMKKLFIENSIPTPKMELLELKPL-QENIISFPCVVKPLSGFGSIGVKKVESIDELN 160

Query: 151 -------PLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKS---DFY 200
                   +D +   ++N   ++L+E+Y+ G+E    ++      +T +   K      Y
Sbjct: 161 NIIKIHSLIDKVSLKNFNPKHKVLVEEYISGVEYAVDIIWQNRKPLTTVVTCKGVMKGPY 220

Query: 201 SYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG-CRGISRSDFLFDPLSRKVFW 259
            Y+ +Y  ++           D+Y E+++ A   ++ +G   G + ++  FD    +++ 
Sbjct: 221 FYDREYILVSPK--------EDLYTELEKAAVRVNKCLGIINGATHTELKFDK--DQIYC 270

Query: 260 LE 261
           +E
Sbjct: 271 IE 272


>gi|289549279|ref|YP_003474267.1| carbamoyl-phosphate synthase L chain ATP- binding protein
           [Thermocrinis albus DSM 14484]
 gi|289182896|gb|ADC90140.1| Carbamoyl-phosphate synthase L chain ATP- binding protein
           [Thermocrinis albus DSM 14484]
          Length = 557

 Score = 70.2 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 49/289 (16%), Positives = 106/289 (36%), Gaps = 38/289 (13%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQIDVDRS---------------------VGLV 45
           G ++E + S   G     AL + G++V  ++ + +                     +  +
Sbjct: 21  GQAAEFDYS---GTQACKALVEEGYQVVLVNSNPATIMTDPGMAHRTYIEPLTVDILEEI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   +PD     L G    +  V    + +LE   +    +   A     D+   K+ + 
Sbjct: 78  IKVERPDALLPTLGGQTALNLAVKLYEEGVLERYGVELLGASYTAIKKGEDRQLFKKSME 137

Query: 102 SCGVPVCPSILVNRFTMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G+ V PS +V+      Q +  I  P +++P       G  +    +     L  +  
Sbjct: 138 RIGLKVPPSAVVSSLEEALQAIKEIGFPAILRPAFTLGGTGGAIAYNMEEFVERLQIALK 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPA 217
            +   Q+LI++ + G  E    V+ D   +V  +   ++    ++       +S  V PA
Sbjct: 198 TSPIHQVLIDKSLIGWKEYEFEVVRDRKDNVIIVCSIEN----FDPMGVHTGDSITVAPA 253

Query: 218 K-IPLDIYKEVQRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
           + +    Y+ ++       + +G   G S   F  +P +   + +E+N 
Sbjct: 254 QTLTDKEYQILRDACIQIMREVGVDTGGSNIQFAVNPENGDFYVIEMNP 302


>gi|261250465|ref|ZP_05943040.1| biotin carboxylase of acetyl-CoA carboxylase [Vibrio orientalis CIP
           102891]
 gi|260939034|gb|EEX95021.1| biotin carboxylase of acetyl-CoA carboxylase [Vibrio orientalis CIP
           102891]
          Length = 447

 Score = 70.2 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 36/222 (16%), Positives = 79/222 (35%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      +E     +         +  DK+ +   +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAEQVERSGFIFVGPKAETIRIMGDKVSAITAMKKAGVPCVPGSDG 136

Query: 114 NRFTMDSQHL-----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GD 164
                ++++      I  P +IK   GG   G+ V++ ++ +   +  + +        D
Sbjct: 137 PLDDDEAKNKAHAKRIGYPVIIKASGGGGGRGMRVVRSEKELTEAIAMTRAEAKSCFNND 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E++++    +   V+ D       +            K          PA  I  +
Sbjct: 197 MVYMEKFLENPRHVEVQVIADGQGGAIHLGERDCSMQRRHQK-----VVEEAPAPGITEE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + K +      A   IG RG    +FL+   + + +++E+N 
Sbjct: 252 MRKYIGERCTRACLEIGYRGAGTFEFLY--ENGEFYFIEMNT 291


>gi|303279222|ref|XP_003058904.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226460064|gb|EEH57359.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 1107

 Score = 70.2 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 53/284 (18%), Positives = 98/284 (34%), Gaps = 46/284 (16%)

Query: 18  SGKACASALEDAGFKVSQI---------DVDRS------------VGLVLAHLKPDLAFN 56
           SG     AL   G++V  +         D + +            V  +L   KPD    
Sbjct: 47  SGTQACKALRSEGYEVVLLNSNPATIMTDPETASRTYVGPMTPELVEEILKKEKPDALLP 106

Query: 57  VLHG--------NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
            + G           E G    ILE   +    + + A   + D+   K  ++  G+   
Sbjct: 107 TMGGQTALNLTKTLAETG----ILEKYNVELIGAKLDAINKAEDRQLFKDAMTKIGLKTP 162

Query: 109 PSILVNRFTMD---SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
           PS   N +       + + + P +I+P       G  +    +     +    + +   Q
Sbjct: 163 PSGTANTWEEALKIQEEIGNFPLIIRPAFTLGGSGGGIAYNMEEYENIVTGGLNASSTTQ 222

Query: 166 LLIEQYVDG-IELTCGVMGD-ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
           +LIE+ + G  E    VM D A   V   ++   D           +S  + PA+ +   
Sbjct: 223 VLIEKSLLGWKEYELEVMRDLADNVVIVCSIENLDPMGVHT----GDSITIAPAQTLTDK 278

Query: 223 IYKEVQRLAFLAHQAIG--CRGISRSDFLFDPLSRKVFWLEINV 264
            Y+ ++  +    + IG  C G S      +P   ++  +E+N 
Sbjct: 279 EYQRLRDASVDIIREIGVECGG-SNVQMAVNPEDGELMIIEMNP 321



 Score = 54.4 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/215 (13%), Positives = 79/215 (36%), Gaps = 13/215 (6%)

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSS 138
            +   +   + D+ R + ++    +   P  +       + + + I  P +++P      
Sbjct: 695 GTPPDSIDAAEDRERWQAILEELKITQPPGGVARSEAEALVAANNIGYPVMVRPSFVLGG 754

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKS 197
             + ++  D  +   +  +   +    +L+++Y+ +  EL    + DA  +V    + + 
Sbjct: 755 RAMEIVSSDADLKRYITTAVEVDPEKPVLVDKYLANATELDVDALCDAEGNVVICGIMEH 814

Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
              +    +S  ++  + P  I       ++       + +G  G+    +   P   +V
Sbjct: 815 IEQAGV--HSGDSACSIPPQTISEKSLAIIRDWTPKVAKRLGVIGLINIQWAVTPND-EV 871

Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYS---FRELL 289
           + +E N +   T     P +A   G+    +  L+
Sbjct: 872 YIIEANPRASRT----VPFVAKAIGHPLAKYASLV 902


>gi|119513297|ref|ZP_01632337.1| carbamoyl-phosphate synthase large subunit [Nodularia spumigena
           CCY9414]
 gi|119462060|gb|EAW43057.1| carbamoyl-phosphate synthase large subunit [Nodularia spumigena
           CCY9414]
          Length = 1088

 Score = 70.2 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 52/279 (18%), Positives = 97/279 (34%), Gaps = 36/279 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLA------------FN 56
           SG     AL + G++V  +         D + +    +  L PD                
Sbjct: 29  SGTQACKALREEGYEVVLVNSNPATIMTDPETADRTYIEPLTPDFVEKVIAKERPDALLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  V       L+   +    + + A   + D+    + ++  GV VCPS  
Sbjct: 89  TMGGQTALNLAVALAKNGALDKYNVELIGAKLPAIEKAEDRKLFNEAMAKIGVAVCPSGT 148

Query: 113 ---VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
              +      +  + + P +I+P       G  +    +            +   Q+LI+
Sbjct: 149 ASSLAESKEIAAKIGTYPLIIRPAFTMGGTGGGIAYNKEEFEEMAQVGIDASPVSQILID 208

Query: 170 QYVDG-IELTCGVMGD-ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKE 226
           Q + G  E    VM D A   V   ++   D           +S  V PA+ +    Y+ 
Sbjct: 209 QSLLGWKEYELEVMRDLADNVVIICSIENLDPMGIHT----GDSITVAPAQTLTDKEYQR 264

Query: 227 VQRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           ++ +A    + IG   G S   F  +P++  V  +E+N 
Sbjct: 265 LRDMAIKIIREIGVETGGSNIQFAVNPVTGDVVVIEMNP 303



 Score = 50.1 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 25/191 (13%), Positives = 73/191 (38%), Gaps = 10/191 (5%)

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGSS 138
            +   +  ++ ++ R +++++   +   P+ +   +   +     I  P V++P      
Sbjct: 668 GTSPDSIDMAENRERFEKILNELNIAQPPNGIARSYDDALIVAKRIGYPVVVRPSYVLGG 727

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKS 197
             + ++  D  +   +  +        +LI+++++  IE+    + D +  V    + + 
Sbjct: 728 RAMEIVYSDTDLERYMTFAVLVEPEHPILIDKFLENAIEVDVDAIADHTGRVVIGGIME- 786

Query: 198 DFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR- 255
             +  +    S +S   LP   +   + ++++       QA+   G+    F        
Sbjct: 787 --HIEQAGIHSGDSACSLPSISLSPAVLQQIRTWTVQLAQALSVVGLMNIQFAVVGAQGY 844

Query: 256 --KVFWLEINV 264
             +V+ LE N 
Sbjct: 845 SPQVYILEANP 855


>gi|320155030|ref|YP_004187409.1| biotin carboxylase of acetyl-CoA carboxylase [Vibrio vulnificus
           MO6-24/O]
 gi|319930342|gb|ADV85206.1| biotin carboxylase of acetyl-CoA carboxylase [Vibrio vulnificus
           MO6-24/O]
          Length = 448

 Score = 70.2 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 81/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         +  DK+ +   +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAEQVERSGFIFVGPKADTIRMMGDKVSAITAMKKAGVPCVPGSDG 136

Query: 112 LVNRFTMDS---QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
            ++   + +      I  P +IK   GG   G+ V++K+  +   +     ++ +  + D
Sbjct: 137 PLDNDEVKNRAHAKRIGYPVIIKASGGGGGRGMRVVRKEADLVQAIAMTRAEAKAAFNND 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E++++    +   V+ D       +            K          PA  I  +
Sbjct: 197 MVYMEKFLENPRHVEVQVIADGQGGAIHLGERDCSMQRRHQK-----VVEEAPAPGITEE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + K +      A   IG RG    +FL+   + + +++E+N 
Sbjct: 252 MRKYIGERCTRACVEIGYRGAGTFEFLY--ENGEFYFIEMNT 291


>gi|319790183|ref|YP_004151816.1| phosphoribosylglycinamide formyltransferase 2 [Thermovibrio
           ammonificans HB-1]
 gi|317114685|gb|ADU97175.1| phosphoribosylglycinamide formyltransferase 2 [Thermovibrio
           ammonificans HB-1]
          Length = 394

 Score = 70.2 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 39/262 (14%), Positives = 89/262 (33%), Gaps = 28/262 (10%)

Query: 31  FKVSQIDV--DRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
            +   ID+   R +  ++   KPD     +      D  +   LE            A+ 
Sbjct: 53  HRYYVIDMRDGRQIRNIVYREKPDFIVPEIEAI---DTDMLVELEKEGFTVVPC-ARATK 108

Query: 89  LSMDKM-RSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVIK 145
           L+MD++   +      G+          F     +   +  P V+KP+   S  G  V++
Sbjct: 109 LTMDRIGIRRLAAEELGLKTSAYRFAETFEEFKRAVEELGYPVVVKPVMSSSGKGQSVVR 168

Query: 146 KDQSIPLD--LLQSSSWNHGDQLLIEQYVDGIELTCGVM----GDASLDVTEIAVPKSDF 199
           +   +       + ++   G+ L+IE++++  +    ++     +      E    +   
Sbjct: 169 EPSQLEWAFRYAKENARGKGNALIIEEFIN-FDFEITLLTVRTRNQGTLFCEPIGHRQVD 227

Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
             Y   +         P  +     K+ + +A     A+G  GI   +F       +V++
Sbjct: 228 GDYHESW--------QPQPMSEAALKKAKEMAKAVTDALGGYGIFGCEFFV--KGDEVWF 277

Query: 260 LEINVQPGMTPVSIFPEMAAYA 281
            E++ +P      +    +   
Sbjct: 278 SEVSPRP--HDTGMVTMASQNM 297


>gi|292489399|ref|YP_003532286.1| carbamoyl-phosphate synthase large chain [Erwinia amylovora
           CFBP1430]
 gi|292898382|ref|YP_003537751.1| carbamoyl-phosphate synthase large chain [Erwinia amylovora ATCC
           49946]
 gi|291198230|emb|CBJ45336.1| carbamoyl-phosphate synthase large chain [Erwinia amylovora ATCC
           49946]
 gi|291554833|emb|CBA22698.1| carbamoyl-phosphate synthase large chain [Erwinia amylovora
           CFBP1430]
 gi|312173564|emb|CBX81818.1| carbamoyl-phosphate synthase large chain [Erwinia amylovora ATCC
           BAA-2158]
          Length = 1074

 Score = 70.2 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 50/319 (15%), Positives = 110/319 (34%), Gaps = 52/319 (16%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D +              V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +    Q +L    +    +   A   + D+ R  + +   G+    S +
Sbjct: 89  TMGGQTALNCALELERQGVLAEFGVTMIGATADAIDKAEDRQRFDKAMKKIGLDTARSGI 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     +     +  P +I+P       G  +    +       +    +  ++LLI++
Sbjct: 149 AHTMEEALAVAADVGFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTNELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + +   +   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIEN----FDAMGIHTGDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV-----------QPGMTPVSIFP 275
           +  +    + IG   G S   F  +P + ++  +E+N              G        
Sbjct: 265 RNASMAVLREIGVETGGSNVQFSVNPENGRLIIIEMNPRVSRSSALASKATGF----PIA 320

Query: 276 EMAA--YAGYSFRELLLWM 292
           ++AA    GY+  ELL  +
Sbjct: 321 KIAAKLAVGYTLDELLNDI 339



 Score = 68.6 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 85/221 (38%), Gaps = 14/221 (6%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYV 129
           LE   +P   +   A   + D+ R +Q V   G+    +  V    M  +   +I  P V
Sbjct: 654 LEAAGVPVIGTSPDAIDRAEDRERFQQAVERLGLKQPANATVTAIDMAVEKAAIIGYPLV 713

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  +  +      + S ++   +L+++++ D +E+    + D    
Sbjct: 714 VRPSYVLGGRAMEIVYDETDLKRYFNTAVSVSNDAPVLLDRFLDDAVEVDVDAICDGEQV 773

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           +    +   +    +    S +S   LPA  +  +I   +++        +G RG+    
Sbjct: 774 LIGGIMEHIE----QAGVHSGDSACSLPAYTLSAEIQDVMRQQVEKLAFELGVRGLMNVQ 829

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           F       +V+ +E+N +   T     P ++   G    ++
Sbjct: 830 FAV--KDNEVYLIEVNPRAART----VPFVSKATGMPLAKV 864


>gi|53714814|ref|YP_100806.1| pyruvate carboxylase subunit A [Bacteroides fragilis YCH46]
 gi|60682804|ref|YP_212948.1| putative biotin carboxylase 2 [Bacteroides fragilis NCTC 9343]
 gi|52217679|dbj|BAD50272.1| pyruvate carboxylase subunit A [Bacteroides fragilis YCH46]
 gi|60494238|emb|CAH09031.1| putative biotin carboxylase 2 [Bacteroides fragilis NCTC 9343]
 gi|301164273|emb|CBW23831.1| putative biotin carboxylase 2 [Bacteroides fragilis 638R]
          Length = 504

 Score = 70.2 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 80/220 (36%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+           I +            DK+ ++  +   GVPV P    
Sbjct: 77  AIHPGYGFLSENATFARRCREEGITFIGPDPETMEAMGDKISARIKMIEAGVPVVPGTQD 136

Query: 114 NRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
           N  +++      + I  P ++K   GG   G+ +I     +      + S +      D 
Sbjct: 137 NLKSVEEAVELCNQIGYPVMLKASMGGGGKGMRLIHHADEVAEAYTTAKSESLSSFGDDT 196

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E++V+    +   ++GD   +V  +   +        K             I  ++ 
Sbjct: 197 VYLEKFVEEPHHIEFQILGDKHGNVIHLCERECSVQRRNQKI----VEESPSVFITPELR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +++   A  A +A+   G    +FL D   R  ++LE+N 
Sbjct: 253 RDMGEKAVAAAKAVNYIGAGTIEFLVDKH-RNYYFLEMNT 291


>gi|84393066|ref|ZP_00991832.1| acetyl-CoA carboxylase [Vibrio splendidus 12B01]
 gi|84376318|gb|EAP93200.1| acetyl-CoA carboxylase [Vibrio splendidus 12B01]
          Length = 447

 Score = 70.2 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 36/222 (16%), Positives = 83/222 (37%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         +  DK+ +   +   GVP  P    
Sbjct: 77  AVHPGYGFLSENADFAEQVERSGFIFVGPKAETIRMMGDKVSAITSMKKAGVPCVPGSDG 136

Query: 112 LVNRFTMDSQH---LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
            ++   + ++     I  P +IK   GG   G+ V++ ++ +   +     ++ +  + D
Sbjct: 137 PLDDDEVKNKAHAKRIGFPVIIKASGGGGGRGMRVVRTEKELTEAIAMTRAEAKACFNND 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E++++    +   V+ D   +   +            K          PA  I  +
Sbjct: 197 MVYMEKFLENPRHIEVQVLADGQGNAIHLGERDCSMQRRHQK-----VVEEAPAPGITEE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + K +      A   IG RG    +FL+   + + +++E+N 
Sbjct: 252 MRKYIGDRCTRACLEIGYRGAGTFEFLY--ENGEFYFIEMNT 291


>gi|134113398|ref|XP_774724.1| hypothetical protein CNBF4030 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50257368|gb|EAL20077.1| hypothetical protein CNBF4030 [Cryptococcus neoformans var.
           neoformans B-3501A]
          Length = 1203

 Score = 70.2 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 79/221 (35%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
           ++H  +G   E+      +E   I +            DK +++ +    GVPV P    
Sbjct: 130 MIHPGYGFLSENAEFAKKVEDAGIAFIGPRPETIDALGDKTKARTLAIKTGVPVVPGTPG 189

Query: 114 NRFTMDSQHLI----SPPYVIKPLKGGSSLGIIVIKK----DQSIPLDLLQSSSWNHGDQ 165
              + D           P +IK   GG   G+ V++      +S    + ++ S      
Sbjct: 190 PVESYDKAAAFIEKYGFPVIIKAAMGGGGRGMRVVRDQESFKESFERAVSEAKSAFGDGT 249

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           + IE+++D    +   ++ D   +               ++        V PA  +   +
Sbjct: 250 VFIERFLDRPRHIEVQLLADGEGNCV-----HLFERDCSVQRRHQKVVEVAPAPHLEESV 304

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +   A     A+  R    ++FL D  +R  +++EIN 
Sbjct: 305 RQAILSDALKLADAVKYRNAGTAEFLVDQQNRH-YFIEINP 344


>gi|313203630|ref|YP_004042287.1| hypothetical protein Palpr_1155 [Paludibacter propionicigenes WB4]
 gi|312442946|gb|ADQ79302.1| protein of unknown function DUF201 [Paludibacter propionicigenes
           WB4]
          Length = 369

 Score = 70.2 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 30/174 (17%), Positives = 65/174 (37%), Gaps = 8/174 (4%)

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS 149
           + DK   ++  +   V     ++ +            P ++KP     S G+  I+    
Sbjct: 100 ATDKYMMRRRFADFSVSSPRFVIADENYTV--ENFRYPLIVKPTDRSGSRGVKKIEDPAD 157

Query: 150 IPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209
           +P  + ++   +     ++E+YV G E++   +             K    + E  Y   
Sbjct: 158 LPEAIKRAQKESFTHHAIVEEYVSGSEVSVESISWEGKHYILAITDKV---TTEEPYFVE 214

Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEI 262
              H  P+ +  +I K+++     A  A+    G S ++F       +VF +E+
Sbjct: 215 L-EHHQPSLLSPEIQKKIKSETLKALAALKINYGASHAEFKITSA-GEVFAIEV 266


>gi|294499242|ref|YP_003562942.1| acetyl-CoA carboxylase, biotin carboxylase [Bacillus megaterium QM
           B1551]
 gi|294349179|gb|ADE69508.1| acetyl-CoA carboxylase, biotin carboxylase [Bacillus megaterium QM
           B1551]
          Length = 454

 Score = 70.2 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 38/238 (15%), Positives = 89/238 (37%), Gaps = 23/238 (9%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRS 96
           R++  V    K D     +H  +G   E+     + E  +I +      A      K  +
Sbjct: 64  RNLLTVAQVTKAD----AIHPGYGFLAENADFAEMCESYDITFIGPKAEAIRKMGAKAVA 119

Query: 97  KQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152
           +  +   GVP+ P     I  +   +     I  P ++K   GG   G+ +   ++ +  
Sbjct: 120 RDTMKQAGVPIVPGTEGLIEDSSTAIPVAREIGYPIIVKATAGGGGKGMRLAHSEEELEK 179

Query: 153 DLLQS-----SSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
            + Q+     +++ +G  + +E+Y++    +   ++ D   +V  +            K 
Sbjct: 180 AIRQAQHEAETAFGNGG-VYLEKYLEEPKHIEIQIIADEEGNVVHLGERDCSIQRRHQK- 237

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
                       +  ++  ++ + A  A +A+   G+   +FL D      +++E+N 
Sbjct: 238 ---LVEEAPSPAVDENLRAKMGKAAVSAAKAVDYTGVGTVEFLLDKH-GHFYFMEMNT 291


>gi|260436465|ref|ZP_05790435.1| carbamoyl-phosphate synthase, large subunit [Synechococcus sp. WH
           8109]
 gi|260414339|gb|EEX07635.1| carbamoyl-phosphate synthase, large subunit [Synechococcus sp. WH
           8109]
          Length = 1107

 Score = 70.2 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 59/283 (20%), Positives = 96/283 (33%), Gaps = 44/283 (15%)

Query: 18  SGKACASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLA------------FN 56
           SG     AL   GF+V  I         D + +    +  L PD+               
Sbjct: 29  SGTQAIKALRAEGFEVILINSNPASIMTDPEMADRTYIEPLTPDVVTRVIEKERPDALLP 88

Query: 57  VLHG--------NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
            + G           E+G     LE   +    + + A   + D++  KQ +   GV VC
Sbjct: 89  TMGGQTALNLAVTLAENGT----LERFGVELIGADLKAIQKAEDRLLFKQAMERIGVKVC 144

Query: 109 PSILV---NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
           PS +             + S P +I+P       G  +    +            +   Q
Sbjct: 145 PSGIASSQEEAEAVGAAIGSFPRIIRPAFTLGGSGGGIAYNPEEYAAICKSGLEASPVSQ 204

Query: 166 LLIEQYVDG-IELTCGVMGD-ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
           +LIEQ + G  E    VM D A   V   ++   D           +S  V PA+ +   
Sbjct: 205 ILIEQSLLGWKEFELEVMRDLADNVVIVCSIENLDPMGVHT----GDSITVAPAQTLTDR 260

Query: 223 IYKEVQRLAFLAHQAIG-CRGISRSDFLFDPLSRKVFWLEINV 264
            Y+ ++  +    + IG   G S   F  +P +  V  +E+N 
Sbjct: 261 EYQRLRDQSIAIIREIGVATGGSNIQFAINPDNGDVVVIEMNP 303



 Score = 52.8 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 30/219 (13%), Positives = 76/219 (34%), Gaps = 14/219 (6%)

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ--HLISPPYVIKPLKGGSS 138
            +   +   + D+ + + ++ +  +    + L             +  P V++P      
Sbjct: 688 GTSPESIDQAEDREQFEAILRNLNIRQPRNGLARSEEEARAVATRVGYPVVVRPSYVLGG 747

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKS 197
             + V+  ++ +   + ++        +LI+QY++  +E+    + D +  V    + + 
Sbjct: 748 RAMEVVFDEEELNRYMREAVQVEPDHPVLIDQYLENAVEVDVDALCDHTGAVIVGGLME- 806

Query: 198 DFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256
             +       S +S   LPA  +       ++  +    Q +  RG+    F     +  
Sbjct: 807 --HIEPAGIHSGDSACCLPAVSLGEAALNTIRDWSRSLAQTLEVRGLINLQFAVQRNTDG 864

Query: 257 ---VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
              V+ +E N +   T     P +A   G     L   +
Sbjct: 865 SEVVYIIEANPRASRT----VPFVAKATGQPLARLATRL 899


>gi|227519399|ref|ZP_03949448.1| acetyl-CoA carboxylase biotin carboxylase subunit [Enterococcus
           faecalis TX0104]
 gi|256963925|ref|ZP_05568096.1| acetyl-CoA carboxylase [Enterococcus faecalis HIP11704]
 gi|257084219|ref|ZP_05578580.1| acetyl-CoA carboxylase [Enterococcus faecalis Fly1]
 gi|257417048|ref|ZP_05594042.1| acetyl-CoA carboxylase [Enterococcus faecalis AR01/DG]
 gi|307272116|ref|ZP_07553379.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Enterococcus
           faecalis TX0855]
 gi|307286835|ref|ZP_07566917.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Enterococcus
           faecalis TX0109]
 gi|307289805|ref|ZP_07569741.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Enterococcus
           faecalis TX0411]
 gi|227073153|gb|EEI11116.1| acetyl-CoA carboxylase biotin carboxylase subunit [Enterococcus
           faecalis TX0104]
 gi|256954421|gb|EEU71053.1| acetyl-CoA carboxylase [Enterococcus faecalis HIP11704]
 gi|256992249|gb|EEU79551.1| acetyl-CoA carboxylase [Enterococcus faecalis Fly1]
 gi|257158876|gb|EEU88836.1| acetyl-CoA carboxylase [Enterococcus faecalis ARO1/DG]
 gi|306499139|gb|EFM68618.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Enterococcus
           faecalis TX0411]
 gi|306502050|gb|EFM71336.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Enterococcus
           faecalis TX0109]
 gi|306511232|gb|EFM80239.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Enterococcus
           faecalis TX0855]
 gi|315166307|gb|EFU10324.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Enterococcus
           faecalis TX1302]
 gi|315171890|gb|EFU15907.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Enterococcus
           faecalis TX1342]
 gi|315173924|gb|EFU17941.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Enterococcus
           faecalis TX1346]
          Length = 456

 Score = 70.2 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 75/220 (34%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  FG   E+    ++ E   I +            +K+ ++Q++    VPV P    
Sbjct: 77  AIHPGFGFLSENSQFASMCEECNITFIGPKAETIDAMGNKINARQLMQKAKVPVIPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL----DLLQSSSWNHGDQ 165
            I      +     I  P ++K   GG   GI  +   + +P        ++ +    D 
Sbjct: 137 VIDSVEEALTIAEEIGYPVMLKAAAGGGGKGIRKVLSKEELPKHFTSAQQEAKAAFGNDD 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+ +     +   ++GD    V  +            K             I  +  
Sbjct: 197 MYLEKIIYPARHIEVQILGDQYGHVIHLGERDCSLQRNNQKVL----EESPSIAISEEKR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +   A  A QA+        +FL DP     +++E+N 
Sbjct: 253 QMLGETAVRAAQAVHYENAGTIEFLMDPA-GDFYFMEMNT 291


>gi|145590409|ref|YP_001152411.1| carbamoyl phosphate synthase large subunit [Pyrobaculum arsenaticum
           DSM 13514]
 gi|145282177|gb|ABP49759.1| carbamoyl-phosphate synthase large subunit [Pyrobaculum arsenaticum
           DSM 13514]
          Length = 1025

 Score = 70.2 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 44/302 (14%), Positives = 109/302 (36%), Gaps = 46/302 (15%)

Query: 21  ACASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGED------ 65
             A  L D G++V+ +         D D    L    +  +   +++    G D      
Sbjct: 565 NLAKELRDRGYRVAILNYNPETVSTDWDVVDKLYFDEITAERVLDIVE-KEGRDVVVVLY 623

Query: 66  --GLV-QAI---LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFT 117
             G + Q +   LE   +    +   +   + D+ +  +++   G+   P +  +     
Sbjct: 624 AGGQIGQRLYAPLEKAGVKIGGTKARSIDAAEDRSKFSKLLDRLGIKQPPWLYASSVEEA 683

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIE 176
           +     +  P +++P        + V    + +   L +++  +    ++I ++   GIE
Sbjct: 684 VKLAEDLGYPVLVRPSYVLGGTYMAVANNAEELRSFLAKAAKVSGEHPVVISKFMPRGIE 743

Query: 177 LTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY-KEVQRLA 231
                + D     +  +  +  P            S +ST VLP +   +   + +  +A
Sbjct: 744 AEVDAVSDGVGIVATPIEHVEPPGIH---------SGDSTMVLPPRRLEEWAVRRMIDIA 794

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
            +  + +  +G     FL       V+ +E N++      S+ P ++   G ++  L+  
Sbjct: 795 HIIARELEVKGPMNVQFLVQDD---VYVIEANLR---ASRSM-PLVSKATGVNYMSLVAD 847

Query: 292 MV 293
           ++
Sbjct: 848 VL 849



 Score = 62.1 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 33/226 (14%), Positives = 86/226 (38%), Gaps = 21/226 (9%)

Query: 70  AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTMDSQHLISPP 127
            IL    +    + +     ++ +   ++ +   G+PV PS         ++    +  P
Sbjct: 103 GILSKYGVRVIGTPVRGIKRALSRDLFQKAMKEAGIPVPPSSPAKSPEEALEIARGLGYP 162

Query: 128 YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGD-- 184
            V++        G  V + ++++   + ++ + +   ++L+E+Y++G  E+   V+ D  
Sbjct: 163 IVVRVSFNLGGAGAFVARSEEALRARIYKAFAQSAIGEVLVEKYLEGWKEVEFEVVRDAY 222

Query: 185 ---ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGC 240
              A++   E   P            + +S  V P   +  + Y++ + ++    ++I  
Sbjct: 223 DNVAAVVCMENVDPMGVH--------TGDSIVVAPCLTLTDEEYQKARDISIGVARSIEL 274

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
            G        +    + + +E    P M+  S     +  +GY   
Sbjct: 275 VGEGNVQVAVNYAGPEQYAIE--TNPRMSRSS--ALASKASGYPLA 316


>gi|254787027|ref|YP_003074456.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Teredinibacter
           turnerae T7901]
 gi|237685735|gb|ACR12999.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Teredinibacter
           turnerae T7901]
          Length = 446

 Score = 70.2 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 81/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H  +G   E+      ++     +         L  DK+ + + +   GVP  P    
Sbjct: 77  AVHPGYGFLAENADFAERVQKSGFVFIGPDADVIRLMGDKVSAIEAMKKAGVPTVPGSGG 136

Query: 113 ----VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGD 164
                    ++    I  P +IK   GG   G+ V+  + S+   +     ++ +    D
Sbjct: 137 PLPGDPETCIEIARRIGFPVIIKAAAGGGGRGMRVVHTEASLWNSIQVTKSEAKAAFGDD 196

Query: 165 QLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+++ +   +   ++ D   +               L+          PA  IP +
Sbjct: 197 TVYMEKFLQNPRHVEVQIISDGQGNTV-----HLFDRDCSLQRRHQKVLEEAPAPGIPEE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +EV +    A   IG RG    +FL+     + +++E+N 
Sbjct: 252 VRQEVYQSCVHACNEIGYRGAGTFEFLY--EDGRFYFIEMNT 291


>gi|194446768|ref|YP_002039297.1| carbamoyl phosphate synthase large subunit [Salmonella enterica
           subsp. enterica serovar Newport str. SL254]
 gi|194405431|gb|ACF65653.1| carbamoyl-phosphate synthase, large subunit [Salmonella enterica
           subsp. enterica serovar Newport str. SL254]
          Length = 1075

 Score = 70.2 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 98/278 (35%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D +              V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILLNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +    Q +LE   +    +   A   + D+ R    +   G+    S +
Sbjct: 89  TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDIAMKKIGLDTARSGI 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     +     +  P +I+P       G  +    +       +    +  ++LLI++
Sbjct: 149 AHTMEEALAVAADVGFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTNELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + +   +   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIEN----FDAMGIHTGDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RNASMAVLREIGVETGGSNVQFAVNPKNGRLIVIEMNP 302



 Score = 61.7 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/197 (14%), Positives = 74/197 (37%), Gaps = 10/197 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           LE   +P   +   A   + D+ R +  V    +    +  V      ++    I  P V
Sbjct: 654 LEAAGVPVIGTSPDAIDRAEDRERFQHAVDRLKLKQPANATVTAIEQAVEKAKEIGYPLV 713

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  +  +      + S ++   +L+++++ D +E+    + D  + 
Sbjct: 714 VRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDRFLDDAVEVDVDAICDGEMV 773

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           +    +   +    +    S +S   LPA  +  +I   +++        +  RG+    
Sbjct: 774 LIGGIMEHIE----QAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRGLMNVQ 829

Query: 248 FLFDPLSRKVFWLEINV 264
           F       +V+ +E+N 
Sbjct: 830 FAV--KDNEVYLIEVNP 844


>gi|150026407|ref|YP_001297233.1| biotin carboxylase [Flavobacterium psychrophilum JIP02/86]
 gi|149772948|emb|CAL44432.1| Biotin carboxylase [Flavobacterium psychrophilum JIP02/86]
          Length = 448

 Score = 70.2 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 34/221 (15%), Positives = 76/221 (34%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H  +G   E+     I     I +  +         DK  +K  +   GVP  P  + 
Sbjct: 77  AIHPGYGFLSENAKFSKICHEHNIKFIGASPEMIDRMGDKASAKSTMIEAGVPCVPGSVG 136

Query: 113 -VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGD 164
            +  +    Q       P ++K   GG   G+  + K + +           ++++ +  
Sbjct: 137 ILESYEQAEQLAAEFGYPVMLKATAGGGGKGMRAVWKQEDLLKAWEGARQESAAAFGNDG 196

Query: 165 QLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
             L E+ ++    +   ++GD+      ++           K     +       +  ++
Sbjct: 197 MYL-EKLIEEPRHIEIQIVGDSFGKACHLSERDCSVQRRHQK----LTEETPSPFMTDEL 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             ++   A  A + I   G    +FL D   R  +++E+N 
Sbjct: 252 RDKMGLAAVKAAEYIKYEGAGTVEFLVDKH-RNFYFMEMNT 291


>gi|217972704|ref|YP_002357455.1| carbamoyl-phosphate synthase L chain ATP-binding [Shewanella
           baltica OS223]
 gi|217497839|gb|ACK46032.1| Carbamoyl-phosphate synthase L chain ATP-binding [Shewanella
           baltica OS223]
          Length = 685

 Score = 70.2 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 81/221 (36%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       E   I +   G  A      K  +K ++++  VP+ P    
Sbjct: 87  AIHPGYGFLSENADFARKCEAAGIAFVGPGSDAIDAMGSKSAAKSIMTAANVPLVPGYHG 146

Query: 114 NRFTM----DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGDQ 165
           +  T          I  P +IK   GG   G+ +++ +  I   +     ++SS    D+
Sbjct: 147 DDQTDATLKAEALKIGFPMLIKAAYGGGGKGMRIVENEGEIMEAVNSARREASSSFGNDK 206

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           LL+E+Y+     +   V  D   +   ++           K          PA  +   +
Sbjct: 207 LLMERYLRQPRHVEVQVFADTFGNAIYLSDRDCSIQRRHQK-----VVEEAPAPGLSDAL 261

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             ++   A  A +AI   G    +FL D      +++E+N 
Sbjct: 262 RAQMGDAAVAAAKAIDYVGAGTVEFLLDT-DNSFYFMEMNT 301


>gi|312901416|ref|ZP_07760693.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Enterococcus
           faecalis TX0470]
 gi|311291492|gb|EFQ70048.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Enterococcus
           faecalis TX0470]
 gi|315033127|gb|EFT45059.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Enterococcus
           faecalis TX0017]
 gi|315145755|gb|EFT89771.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Enterococcus
           faecalis TX2141]
 gi|315169164|gb|EFU13181.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Enterococcus
           faecalis TX1341]
          Length = 456

 Score = 70.2 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 75/220 (34%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  FG   E+    ++ E   I +            +K+ ++Q++    VPV P    
Sbjct: 77  AIHPGFGFLSENSQFASMCEECNITFIGPKAETIDAMGNKINARQLMQKAKVPVIPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL----DLLQSSSWNHGDQ 165
            I      +     I  P ++K   GG   GI  +   + +P        ++ +    D 
Sbjct: 137 VIDSVEEALTIAEEIGYPVMLKAAAGGGGKGIRKVLSKEELPKHFTSAQQEAKAAFGNDD 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+ +     +   ++GD    V  +            K             I  +  
Sbjct: 197 MYLEKIIYPARHIEVQILGDQYGHVIHLGERDCSLQRNNQKVL----EESPSIAISEEKR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +   A  A QA+        +FL DP     +++E+N 
Sbjct: 253 QMLGETAVRAAQAVHYENAGTIEFLMDPA-GDFYFMEMNT 291


>gi|300724594|ref|YP_003713919.1| carbamoyl phosphate synthase large subunit [Xenorhabdus nematophila
           ATCC 19061]
 gi|297631136|emb|CBJ91827.1| carbamoyl phosphate synthase, large subunit [Xenorhabdus
           nematophila ATCC 19061]
          Length = 1074

 Score = 70.2 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 50/319 (15%), Positives = 110/319 (34%), Gaps = 52/319 (16%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D +              V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +    Q +L+   +    +   A   + D+ R  + +   G+    S +
Sbjct: 89  TMGGQTALNCALELERQGVLDEFGVTMIGATADAIDKAEDRQRFDKAMKKIGLDTARSGI 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     +     +  P +I+P       G  +    +       +    +  ++LLI++
Sbjct: 149 AHTMEEALAVAEDVGFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTNELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + + +   ++   D           +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDPMGIHT----GDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV-----------QPGMTPVSIFP 275
           +  +    + IG   G S   F  +P + ++  +E+N              G        
Sbjct: 265 RNASMAVLREIGVETGGSNVQFAVNPKNGRLIVIEMNPRVSRSSALASKATGF----PIA 320

Query: 276 EMAA--YAGYSFRELLLWM 292
           ++AA    GY+  EL+  +
Sbjct: 321 KIAAKLAVGYTLDELMNDI 339



 Score = 64.0 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 32/197 (16%), Positives = 78/197 (39%), Gaps = 10/197 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           LE   +P   +   A   + D+ R +Q V+  G+    ++ V      ++    I  P V
Sbjct: 654 LEAAGVPIIGTSPDAIDRAEDRERFQQAVNRLGLKQPANVTVTTIEQAVEKGKAIGYPLV 713

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  +  +      + S ++   +L+++++ D IE+    + D    
Sbjct: 714 VRPSYVLGGRAMEIVYDETDLRRYFQTAVSVSNDAPVLLDRFLDDAIEVDVDAICDGERV 773

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           +    +   +    +    S +S   LPA  +  +I   +++        +  RG+    
Sbjct: 774 LIGGIMEHIE----QAGVHSGDSACSLPAYTLSQEIQDVMRQQVEKLAFELRVRGLMNVQ 829

Query: 248 FLFDPLSRKVFWLEINV 264
           F     + +V+ +E+N 
Sbjct: 830 FAV--KNNEVYLIEVNP 844


>gi|271500954|ref|YP_003333979.1| carbamoyl-phosphate synthase ATP-binding protein [Dickeya dadantii
           Ech586]
 gi|270344509|gb|ACZ77274.1| Carbamoyl-phosphate synthase L chain ATP-binding protein [Dickeya
           dadantii Ech586]
          Length = 462

 Score = 70.2 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 42/236 (17%), Positives = 87/236 (36%), Gaps = 24/236 (10%)

Query: 44  LVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
             L +   D A + +H  +G   E+      +E   + +         L  DK  +++  
Sbjct: 67  AALLNAARDCAADAVHPGYGFLSENAAFADAVEQAGLVFVGPTADTIRLMGDKAAARRTA 126

Query: 101 SSCGVPVCPS---ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQ----SIPLD 153
            + GVPV P    +      + +   I  P +IK   GG   GI V+  +      +P+ 
Sbjct: 127 QAAGVPVVPGSGVLSSLEAALQAATEIGYPLLIKAAAGGGGRGIRVVNNEDDLKRELPIA 186

Query: 154 LLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVT----EIAVPKSDFYSYELKYSS 208
             ++ +      + +E ++     +   ++GD    V     E ++ +     +E   SS
Sbjct: 187 QSEAKAAFGCGDVYLELFIRHARHIEVQILGDGERAVHLYERECSLQRRRQKVFEEAPSS 246

Query: 209 LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
                     +  +    + R A    Q +  R     ++LFD    + +++E+N 
Sbjct: 247 A---------LSPEQRDALCRSALQLAQQLRYRSAGTLEYLFDTEREQFYFIEMNT 293


>gi|239997108|ref|ZP_04717632.1| acetyl-CoA carboxylase [Alteromonas macleodii ATCC 27126]
          Length = 304

 Score = 70.2 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 35/223 (15%), Positives = 77/223 (34%), Gaps = 21/223 (9%)

Query: 56  NVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111
             +H  +G   E+      +E     +         L  DK+ +   +   GVP  P   
Sbjct: 76  IAIHPGYGFLAENADFAEAVEKSGFIFIGPKAETINLMGDKVSAINAMKKAGVPCVPGSD 135

Query: 112 --LVNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHG 163
             L +    +      I  P ++K   GG   G+ V++ +  +   +     ++ +    
Sbjct: 136 GPLTDDVERNKAIAKRIGYPIIVKAAGGGGGRGMRVVRSEAELIKAIETTQAEAGAAFGN 195

Query: 164 DQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPL 221
             + +E++++    +   V+ D   +   +            K          PA  I  
Sbjct: 196 STVYMEKFLENPRHVEIQVLADGQGNAIHLGERDCSMQRRHQK-----VVEEAPAPGISE 250

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +  ++      A   IG RG    +FL+   + + +++E+N 
Sbjct: 251 QMRTKIGDRCRRACIEIGYRGAGTFEFLY--ENGEFYFIEMNT 291


>gi|223984193|ref|ZP_03634342.1| hypothetical protein HOLDEFILI_01635 [Holdemania filiformis DSM
           12042]
 gi|223963851|gb|EEF68214.1| hypothetical protein HOLDEFILI_01635 [Holdemania filiformis DSM
           12042]
          Length = 330

 Score = 70.2 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 46/269 (17%), Positives = 94/269 (34%), Gaps = 32/269 (11%)

Query: 25  ALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++V  I+ + +                     V  ++   +PD     L G  G
Sbjct: 36  ALREEGYEVILINSNPATIMTDTNIADKVYMEPLTLEYVSRIIRKERPDAILPTLGGQTG 95

Query: 64  EDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFT 117
            +  +Q     +LE        +   +   + D+ R K +    G P   S +       
Sbjct: 96  LNMAMQLAKKGVLEECRCEILGTDFESIDQAEDRQRFKDLCLRIGQPCLESYVARTIEEV 155

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IE 176
           ++  + I  P V++P       G      D  +      +   +   ++L+E+ + G  E
Sbjct: 156 VEYANKIGYPVVLRPAFTLGGTGGGFAYDDAEVIALGKNALKLSPVSEVLVEKSIKGYKE 215

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAH 235
           +   VM D +     I   ++      +   + +S  V P + +    Y+ ++  A    
Sbjct: 216 IEFEVMRDHNDTAIVICSMEN---IDPVGVHTGDSMVVAPCQTLSNKEYQLLRNAALTLI 272

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +   G     F  DP S   + +E+N 
Sbjct: 273 RELKIEGGCNVQFALDPFSFDYYVIEVNP 301


>gi|297204798|ref|ZP_06922195.1| conserved hypothetical protein [Streptomyces sviceus ATCC 29083]
 gi|197712508|gb|EDY56542.1| conserved hypothetical protein [Streptomyces sviceus ATCC 29083]
          Length = 420

 Score = 70.2 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 43/202 (21%), Positives = 73/202 (36%), Gaps = 24/202 (11%)

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGSS 138
                    + +K   KQ   + GV    S LV      +D+   +  P VIKP   G S
Sbjct: 100 GLDATTVTNARNKYAMKQAFLAAGVQAPDSRLVQSEQELLDAIESVGLPVVIKPYDFGGS 159

Query: 139 LGIIVIKKDQSIPLDLLQSSS--------WNH-GDQLLIEQYVDGIELTCGVMGDASLDV 189
            G+++    +     L +S +        +N  GD+ L+EQ++D          D     
Sbjct: 160 GGVVLATTREEAVAGLAESKAVIAQYGSSFNILGDKYLVEQFIDS--------DDEVSVE 211

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK---EVQRLAFLAHQAIGC-RGISR 245
                 ++   +   KY S        A +          +  LA  A  A+G  RG++ 
Sbjct: 212 VLCGAGRAQVLAVTEKYLSPRPWFAEVAHLVPSHRTGDPVLTDLAVRACTALGIDRGLAH 271

Query: 246 SDFLFDPLSRKVFWLEINVQPG 267
            +  FD      + +E+  +PG
Sbjct: 272 VEIKFDA-DGTAWVIEVAARPG 292


>gi|169828996|ref|YP_001699154.1| acetyl-CoA carboxylase biotin carboxylase subunit [Lysinibacillus
           sphaericus C3-41]
 gi|168993484|gb|ACA41024.1| Biotin carboxylase [Lysinibacillus sphaericus C3-41]
          Length = 452

 Score = 70.2 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 36/218 (16%), Positives = 82/218 (37%), Gaps = 15/218 (6%)

Query: 58  LHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS---I 111
           +H  +G   E+       E   I +      +  +   K  ++  + + GVP+ P    +
Sbjct: 77  IHPGYGFVSENADFAEACENAGIKFIGPSSDSIKIMGIKDVARTTMEAAGVPLVPGTGIV 136

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQLL 167
                  +    I  P +IK   GG   GI V + ++ +   +     ++++      + 
Sbjct: 137 PDIETGKEWAAKIGYPVIIKATAGGGGKGIRVARTEEDLVKGIDITQKEAAAAFGNPGVY 196

Query: 168 IEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE 226
           +E++++        ++ D   +V  +        + + +   L      PA +  +   E
Sbjct: 197 LEKFIEYFRHCEIQILADGYGNVVHLGERD---CTVQRRMQKLVEEAPSPA-LSSERRAE 252

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +   A  A QA    G    +F++D    K +++E+N 
Sbjct: 253 MGAAAVKAAQACDYEGAGTIEFIYDYQEDKFYFMEMNT 290


>gi|1750392|gb|AAB39256.1| carbamoylphosphate synthetase large subunit [Salmonella enterica
           subsp. enterica serovar Typhimurium]
          Length = 1075

 Score = 70.2 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 98/278 (35%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D +              V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +    Q +LE   +    +   A   + D+ R    +   G+    S +
Sbjct: 89  TMGGQTALNCALELERQGVLEEFGVTMIGATADAGDKAEDRRRFDIAMKKIGLDTARSGI 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     +     +  P +I+P       G  +    +       +    +  ++LLI++
Sbjct: 149 AHTMEEALAVAADVGFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTNELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + +   +   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIEN----FDAMGIHTGDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RNASMAVLREIGVETGGSNVQFAVNPKNGRLIVIEMNP 302



 Score = 61.7 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/197 (14%), Positives = 74/197 (37%), Gaps = 10/197 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           LE   +P   +   A   + D+ R +  V    +    +  V      ++    I  P V
Sbjct: 654 LEAAGVPVIGTSPDAIDRAEDRERFQHAVDRLKLKQPANATVTAIEQAVEKAKEIGYPLV 713

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  +  +      + S ++   +L+++++ D +E+    + D  + 
Sbjct: 714 VRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDRFLDDAVEVDVDAICDGEMV 773

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           +    +   +    +    S +S   LPA  +  +I   +++        +  RG+    
Sbjct: 774 LIGGIMEHIE----QAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRGLMNVQ 829

Query: 248 FLFDPLSRKVFWLEINV 264
           F       +V+ +E+N 
Sbjct: 830 FAV--KDNEVYLIEVNP 844


>gi|57237923|ref|YP_179171.1| acetyl-CoA carboxylase [Campylobacter jejuni RM1221]
 gi|86153141|ref|ZP_01071346.1| acetyl-CoA carboxylase, biotin carboxylase [Campylobacter jejuni
           subsp. jejuni HB93-13]
 gi|88596421|ref|ZP_01099658.1| acetyl-CoA carboxylase, biotin carboxylase [Campylobacter jejuni
           subsp. jejuni 84-25]
 gi|121613650|ref|YP_001000716.1| acetyl-CoA carboxylase subunit A [Campylobacter jejuni subsp.
           jejuni 81-176]
 gi|157415294|ref|YP_001482550.1| acetyl-CoA carboxylase [Campylobacter jejuni subsp. jejuni 81116]
 gi|167005637|ref|ZP_02271395.1| pyruvate carboxylase subunit A [Campylobacter jejuni subsp. jejuni
           81-176]
 gi|218562653|ref|YP_002344432.1| acetyl-CoA carboxylase subunit A [Campylobacter jejuni subsp.
           jejuni NCTC 11168]
 gi|283956433|ref|ZP_06373913.1| acetyl-CoA carboxylase, biotin carboxylase [Campylobacter jejuni
           subsp. jejuni 1336]
 gi|57166727|gb|AAW35506.1| acetyl-CoA carboxylase, biotin carboxylase [Campylobacter jejuni
           RM1221]
 gi|85844026|gb|EAQ61236.1| acetyl-CoA carboxylase, biotin carboxylase [Campylobacter jejuni
           subsp. jejuni HB93-13]
 gi|87249292|gb|EAQ72253.1| acetyl-CoA carboxylase, biotin carboxylase [Campylobacter jejuni
           subsp. jejuni 81-176]
 gi|88191262|gb|EAQ95234.1| acetyl-CoA carboxylase, biotin carboxylase [Campylobacter jejuni
           subsp. jejuni 84-25]
 gi|112360359|emb|CAL35155.1| pyruvate carboxylase A subunit [Campylobacter jejuni subsp. jejuni
           NCTC 11168]
 gi|157386258|gb|ABV52573.1| pyruvate carboxylase subunit A [Campylobacter jejuni subsp. jejuni
           81116]
 gi|283792153|gb|EFC30942.1| acetyl-CoA carboxylase, biotin carboxylase [Campylobacter jejuni
           subsp. jejuni 1336]
 gi|307747937|gb|ADN91207.1| Acetyl-CoA carboxylase, biotin carboxylase [Campylobacter jejuni
           subsp. jejuni M1]
 gi|315058480|gb|ADT72809.1| acetyl-CoA carboxylase [Campylobacter jejuni subsp. jejuni S3]
 gi|315927956|gb|EFV07278.1| acetyl-CoA carboxylase, biotin carboxylase [Campylobacter jejuni
           subsp. jejuni DFVF1099]
 gi|315930370|gb|EFV09447.1| acetyl-CoA carboxylase, biotin carboxylase [Campylobacter jejuni
           subsp. jejuni 305]
 gi|315932168|gb|EFV11111.1| Acetyl-CoA carboxylase [Campylobacter jejuni subsp. jejuni 327]
          Length = 481

 Score = 70.2 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 91/222 (40%), Gaps = 20/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H  +G   E+       E   I +            +K  ++++++  G+P+ P    
Sbjct: 78  AIHPGYGFLSENYEFAKACEDAGIIFIGPKSEVIHKMGNKNIARKLMAKNGIPIVPGTEK 137

Query: 113 VNRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGD 164
           +N ++M+        I  P ++K   GG   GI V+ K+Q +         ++ ++ + D
Sbjct: 138 LNSYSMEEIKIFAEKIGYPVILKASGGGGGRGIRVVHKEQDLENAFESCKREALTYFNND 197

Query: 165 QLLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
           ++ +E+Y V+   +   ++GD   ++  +            K        + P   I  +
Sbjct: 198 EVFMEKYVVNPRHIEFQILGDNYGNIIHLCERDCSIQRRHQK-----VIEIAPCPGISDN 252

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + K +   A  A +A+G       +FL D  +R  +++E+N 
Sbjct: 253 LRKTMGVTAVAAAKAVGYTNAGTIEFLLDDYNR-FYFMEMNT 293


>gi|326318672|ref|YP_004236344.1| cyanophycin synthetase [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323375508|gb|ADX47777.1| cyanophycin synthetase [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 861

 Score = 70.2 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 22/112 (19%), Positives = 49/112 (43%), Gaps = 5/112 (4%)

Query: 88  ALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIV-I 144
           +++ DK  +K+++ + GVPV     V            +  P V+KP  G    G+ V I
Sbjct: 200 SIAQDKDLTKRLLHAAGVPVPLGRPVADLEDAWKVAEEVGLPVVVKPQDGNQGKGVTVNI 259

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK 196
                +      + ++   D++++E+++ G +    V+G+  +       P+
Sbjct: 260 TTRAQLEAAYATAQAF--SDEVMVERFLPGHDFRLLVVGNQLVAAARREPPQ 309


>gi|167586070|ref|ZP_02378458.1| acetyl-CoA carboxylase biotin carboxylase subunit [Burkholderia
           ubonensis Bu]
          Length = 455

 Score = 70.2 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 79/222 (35%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H  +G   E+      +E     +         L  DK+ +KQ +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAERVEQSGFTFIGPRPETIRLMGDKVTAKQTMIKTGVPCVPGSEG 136

Query: 113 ----VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
                 +  +     I  P +IK   GG   G+ V+  + ++   +     ++       
Sbjct: 137 ALPDDPKEIVKIARAIGYPVIIKAAGGGGGRGMRVVHTEAALVNAVNMTREEAGRAFGNP 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
           Q+ +E++++    +   V+ DA  +   +            K          PA  IP  
Sbjct: 197 QVYMEKFLENPRHIEIQVLSDAHKNALWLGERDCSMQRRHQK-----VIEEAPAPGIPRR 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +   +      A + +G  G    +FL+   + + +++E+N 
Sbjct: 252 LIDRIGDRCADACKKMGYLGAGTFEFLY--ENGEFYFIEMNT 291


>gi|332143315|ref|YP_004429053.1| acetyl-CoA carboxylase [Alteromonas macleodii str. 'Deep ecotype']
 gi|327553337|gb|AEB00056.1| acetyl-CoA carboxylase [Alteromonas macleodii str. 'Deep ecotype']
          Length = 447

 Score = 70.2 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 35/223 (15%), Positives = 77/223 (34%), Gaps = 21/223 (9%)

Query: 56  NVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111
             +H  +G   E+      +E     +         L  DK+ +   +   GVP  P   
Sbjct: 76  IAIHPGYGFLAENADFAEAVEKSGFIFIGPKAETINLMGDKVSAINAMKKAGVPCVPGSD 135

Query: 112 --LVNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHG 163
             L +    +      I  P ++K   GG   G+ V++ +  +   +     ++ +    
Sbjct: 136 GPLTDDAERNRAIAKRIGYPIIVKAAGGGGGRGMRVVRSESELVKAIETTQAEAGAAFGN 195

Query: 164 DQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPL 221
             + +E++++    +   V+ D   +   +            K          PA  I  
Sbjct: 196 ATVYMEKFLENPRHVEIQVLADGQGNAIHLGERDCSMQRRHQK-----VVEEAPAPGISE 250

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +  ++      A   IG RG    +FL+   + + +++E+N 
Sbjct: 251 QMRAKIGDRCRRACIEIGYRGAGTFEFLY--ENGEFYFIEMNT 291


>gi|332975313|gb|EGK12211.1| ATP-grasp domain protein [Desmospora sp. 8437]
          Length = 453

 Score = 70.2 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 42/244 (17%), Positives = 85/244 (34%), Gaps = 38/244 (15%)

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGSSLG 140
            +     S +K  ++  +   G+      L    T  ++    I  P ++KP+ G +S  
Sbjct: 117 SVDGLYRSNNKYLTRDALRHAGLQTVDFGLATEETSLIEHARRIGYPVILKPINGCASQL 176

Query: 141 IIVIKKDQSIPLDLLQSSS--------------------------WNHGDQLLIEQYVDG 174
           +I  + +Q +      +                            ++    +L+E+Y++G
Sbjct: 177 VIKCENEQELLQGYRSALKKLPRSIYRDLYACTHRFADKKGNQIIFDPLRTMLVEKYIEG 236

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
            E +  ++   S DV  + V      S   +    +   V P +   +  + ++R A   
Sbjct: 237 PEASIEIVATES-DVIPLLVHDKVLVSEGDRVVYEHLLVVPPVRFTQEELENIRRYAVEV 295

Query: 235 HQAIGCR-GISRSDFLFDPLSRKVFWLEINV-QPGMTPVSIFPEMAAYAGYSFRELLLWM 292
            +A G +  +   +  +D  S     LEIN    GM    +  +        F  L   M
Sbjct: 296 AKATGIKNSLCHVEIRYDKHSGPQ-LLEINPRVGGM----LVTKSLETM-IGFHAL-DAM 348

Query: 293 VEDA 296
           V+ A
Sbjct: 349 VDLA 352


>gi|315124526|ref|YP_004066530.1| acetyl-CoA carboxylase, biotin carboxylase [Campylobacter jejuni
           subsp. jejuni ICDCCJ07001]
 gi|315018248|gb|ADT66341.1| acetyl-CoA carboxylase, biotin carboxylase [Campylobacter jejuni
           subsp. jejuni ICDCCJ07001]
          Length = 482

 Score = 70.2 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 91/222 (40%), Gaps = 20/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H  +G   E+       E   I +            +K  ++++++  G+P+ P    
Sbjct: 78  AIHPGYGFLSENYEFAKACEDAGIIFIGPKSEVIHKMGNKNIARKLMAKNGIPIVPGTEK 137

Query: 113 VNRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGD 164
           +N ++M+        I  P ++K   GG   GI V+ K+Q +         ++ ++ + D
Sbjct: 138 LNSYSMEEIKIFAEKIGYPVILKASGGGGGRGIRVVHKEQDLENAFESCKREALTYFNND 197

Query: 165 QLLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
           ++ +E+Y V+   +   ++GD   ++  +            K        + P   I  +
Sbjct: 198 EVFMEKYVVNPRHIEFQILGDNYGNIIHLCERDCSIQRRHQK-----VIEIAPCPGISDN 252

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + K +   A  A +A+G       +FL D  +R  +++E+N 
Sbjct: 253 LRKTMGVTAVAAAKAVGYTNAGTIEFLLDDYNR-FYFMEMNT 293


>gi|306826792|ref|ZP_07460094.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus pyogenes
           ATCC 10782]
 gi|304431081|gb|EFM34088.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus pyogenes
           ATCC 10782]
          Length = 468

 Score = 70.2 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 80/220 (36%), Gaps = 16/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  FG   E+     + E + I +            DK+ ++  +   GVPV P    
Sbjct: 91  AIHPGFGFLSENSKFATMCEEMNIKFIGPSASVMDKMGDKINARSEMIKAGVPVIPGSDG 150

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG----DQ 165
            +   +  +   + I  P ++K   GG   GI  ++ +  +      +S    G      
Sbjct: 151 EVYNAQEALAIANKIGYPVMLKASAGGGGKGIRKVETEADLEAAFNAASQEALGAFGNGA 210

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+ +     +   ++GDA  ++  +         +  K             I   + 
Sbjct: 211 MYLEKVIYPARHIEVQILGDAYGNIIHLGERDCSLQRHNQKVL----EESPSIAIGNTLR 266

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            E+ + A  A +A+        +FL D  S K +++E+N 
Sbjct: 267 HEMGQAAVRAAKAVAYENAGTIEFLLDEDSEKFYFMEMNT 306


>gi|221128007|ref|XP_002154086.1| PREDICTED: similar to GH14119 [Hydra magnipapillata]
 gi|260222360|emb|CBA31846.1| Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial
           [Curvibacter putative symbiont of Hydra magnipapillata]
          Length = 678

 Score = 70.2 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 40/228 (17%), Positives = 73/228 (32%), Gaps = 25/228 (10%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+           + +      A      K  SKQ++   GVP+ P    
Sbjct: 77  AIHPGYGFLSENEEFANACAAAGLVFIGPPASAIQAMGLKAESKQLMEKAGVPLVPGYHG 136

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
                         I  P +IK   GG   G+  + K +     L             D 
Sbjct: 137 KDQDATLLQREADRIGYPVLIKASAGGGGKGMRAVDKAEGFAAALASCKREAINSFGDDA 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           +LIE+YV     +   V GD   +   +           ++          PA  +   +
Sbjct: 197 VLIEKYVQRPRHIEIQVFGDTQGNYVYL-----FERDCSVQRRHQKVLEEAPAPGMTPAL 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR-------KVFWLEINV 264
             ++ + A  A +A+   G    +F+ +           K +++E+N 
Sbjct: 252 RAQMGQAAVEAARAVNYVGAGTVEFIVEQPGGYEHPEAMKFYFMEMNT 299


>gi|17988208|ref|NP_540842.1| acetyl-CoA carboxylase alpha chain / propionyl-CoA carboxylase
           alpha chain [Brucella melitensis bv. 1 str. 16M]
 gi|17983972|gb|AAL53106.1| acetyl-CoA carboxylase alpha chain / propionyl-CoA carboxylase
           alpha chain [Brucella melitensis bv. 1 str. 16M]
          Length = 678

 Score = 70.2 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 39/225 (17%), Positives = 73/225 (32%), Gaps = 22/225 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      +E   + +      A      K  +K ++   GVPV P    
Sbjct: 100 AIHPGYGFLSENPAFVDAVEEAGLIFIGPSAKAIRAMGLKDAAKALMEKAGVPVVPGYHG 159

Query: 114 NRFT----MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
           +             I+ P +IK   GG   G+  +         L     ++ +      
Sbjct: 160 DNQDGAFLKSEADRITYPVLIKARAGGGGKGMRRVDSAADFAAALESARREAEASFGDGA 219

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           +L+E+Y+     +   V GD   +               L+          PA  +  ++
Sbjct: 220 VLVEKYMAKPRHIEVQVFGDNHGNAV-----HLFERDCSLQRRHQKVIEEAPAPGMTEEM 274

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR----KVFWLEINV 264
              +   A  A   IG  G    +F+ D        + F++E+N 
Sbjct: 275 RAAMGEAAVKAALTIGYSGAGTVEFIADVSEGLRPDRFFFMEMNT 319


>gi|86151145|ref|ZP_01069361.1| acetyl-CoA carboxylase, biotin carboxylase [Campylobacter jejuni
           subsp. jejuni 260.94]
 gi|85842315|gb|EAQ59561.1| acetyl-CoA carboxylase, biotin carboxylase [Campylobacter jejuni
           subsp. jejuni 260.94]
          Length = 481

 Score = 70.2 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 91/222 (40%), Gaps = 20/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H  +G   E+       E   I +            +K  ++++++  G+P+ P    
Sbjct: 78  AIHPGYGFLSENYEFAKACEDAGIIFIGPKSEVIHKMGNKNIARKLMAKNGIPIVPGTEK 137

Query: 113 VNRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGD 164
           +N ++M+        I  P ++K   GG   GI V+ K+Q +         ++ ++ + D
Sbjct: 138 LNSYSMEEIKIFAEKIGYPVILKASGGGGGRGIRVVHKEQDLENAFESCKREALTYFNND 197

Query: 165 QLLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
           ++ +E+Y V+   +   ++GD   ++  +            K        + P   I  +
Sbjct: 198 EVFMEKYVVNPRHIEFQILGDNYGNIIHLCERDCSIQRRHQK-----VIEIAPCPGISDN 252

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + K +   A  A +A+G       +FL D  +R  +++E+N 
Sbjct: 253 LRKTMGVTAVAAAKAVGYTNAGTIEFLLDDYNR-FYFMEMNT 293


>gi|86150487|ref|ZP_01068712.1| acetyl-CoA carboxylase, biotin carboxylase [Campylobacter jejuni
           subsp. jejuni CF93-6]
 gi|85839082|gb|EAQ56346.1| acetyl-CoA carboxylase, biotin carboxylase [Campylobacter jejuni
           subsp. jejuni CF93-6]
 gi|284926267|gb|ADC28619.1| acetyl-CoA carboxylase subunit A [Campylobacter jejuni subsp.
           jejuni IA3902]
          Length = 481

 Score = 70.2 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 91/222 (40%), Gaps = 20/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H  +G   E+       E   I +            +K  ++++++  G+P+ P    
Sbjct: 78  AIHPGYGFLSENYEFAKACEDAGIIFIGPKSEVIHKMGNKNIARKLMAKNGIPIVPGTEK 137

Query: 113 VNRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGD 164
           +N ++M+        I  P ++K   GG   GI V+ K+Q +         ++ ++ + D
Sbjct: 138 LNSYSMEEIKIFAEKIGYPVILKASGGGGGRGIRVVHKEQDLENAFESCKREALTYFNND 197

Query: 165 QLLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
           ++ +E+Y V+   +   ++GD   ++  +            K        + P   I  +
Sbjct: 198 EVFMEKYVVNPRHIEFQILGDNYGNIIHLCERDCSIQRRHQK-----VIEIAPCPGISDN 252

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + K +   A  A +A+G       +FL D  +R  +++E+N 
Sbjct: 253 LRKTMGVTAVAAAKAVGYTNAGTIEFLLDDYNR-FYFMEMNT 293


>gi|331006279|ref|ZP_08329596.1| Biotin carboxylase of acetyl-CoA carboxylase [gamma proteobacterium
           IMCC1989]
 gi|330419900|gb|EGG94249.1| Biotin carboxylase of acetyl-CoA carboxylase [gamma proteobacterium
           IMCC1989]
          Length = 446

 Score = 70.2 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 80/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+      ++     +         +  DK+ + + +   GVP  P    
Sbjct: 77  AVHPGYGFLAENADFAEQVQKSGFIFVGPDADVIRMMGDKVCAIEAMKKAGVPTVPGSDG 136

Query: 111 -ILVNRFT-MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
            +  ++   M     I  P +IK   GG   G+ V+  + ++   +     ++ +    D
Sbjct: 137 ELPEDKEECMRIAKRIGYPIIIKAAAGGGGRGMRVVHTESALINSIHVTKSEAGAAFGDD 196

Query: 165 QLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+++ +   +   ++ D   +               ++          PA  IP D
Sbjct: 197 TVYMEKFLQNPRHVEIQIISDGQGNTI-----HLGDRDCSMQRRHQKVIEEAPAPGIPDD 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           I + V      A   IG RG    +FL+       +++E+N 
Sbjct: 252 IREGVYASCIKACNDIGYRGAGTFEFLY--EDGGFYFIEMNT 291


>gi|319649717|ref|ZP_08003873.1| pyruvate carboxylase [Bacillus sp. 2_A_57_CT2]
 gi|317398879|gb|EFV79561.1| pyruvate carboxylase [Bacillus sp. 2_A_57_CT2]
          Length = 1146

 Score = 70.2 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 28/221 (12%), Positives = 77/221 (34%), Gaps = 20/221 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+       E   I +         +  DK++++       +PV P    
Sbjct: 81  AIHPGYGFLSENIEFAKRCEEEGIIFIGPTSKHLDMFGDKVKARTQAQLAEIPVIPGSDG 140

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK----DQSIPLDLLQSSSWNHGDQ 165
            +      +        P +IK   GG   G+ +++      +S      ++ +    D+
Sbjct: 141 PVESLDEVISFGKNHGFPIIIKASLGGGGRGMRIVRSLEDVKESYERAKSEAKAAFGNDE 200

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDI 223
           + +E++++    +   ++GD   ++  +           ++        V P   +   +
Sbjct: 201 VYVERFIERPKHIEVQIIGDNEGNIVHLYE-----RDCSVQRRHQKVVEVAPCVSLSKKL 255

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             ++ + A    + +        +FL      + +++E+N 
Sbjct: 256 RDDICQAAVNLMKNVDYINAGTVEFLV--SGDQFYFIEVNP 294


>gi|294851425|ref|ZP_06792098.1| 3-methylcrotonyl-CoA carboxylase alpha subunit [Brucella sp. NVSL
           07-0026]
 gi|294820014|gb|EFG37013.1| 3-methylcrotonyl-CoA carboxylase alpha subunit [Brucella sp. NVSL
           07-0026]
          Length = 655

 Score = 70.2 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 39/225 (17%), Positives = 73/225 (32%), Gaps = 22/225 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      +E   + +      A      K  +K ++   GVPV P    
Sbjct: 77  AIHPGYGFLSENPAFVNAVEEAGLIFIGPSAKAIRAMGLKDAAKALMEKAGVPVVPGYHG 136

Query: 114 NRFT----MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
           +             I+ P +IK   GG   G+  +         L     ++ +      
Sbjct: 137 DNQDGAFLKSEADRITYPVLIKARAGGGGKGMRRVDSAADFAAALESARREAEASFGDGA 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           +L+E+Y+     +   V GD   +               L+          PA  +  ++
Sbjct: 197 VLVEKYMAKPRHIEVQVFGDNHGNAV-----HLFERDCSLQRRHQKVIEEAPAPGMTEEM 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR----KVFWLEINV 264
              +   A  A   IG  G    +F+ D        + F++E+N 
Sbjct: 252 RAAMGEAAVKAALTIGYSGAGTVEFIADVSEGLRPDRFFFMEMNT 296


>gi|291231876|ref|XP_002735883.1| PREDICTED: CG1516-like [Saccoglossus kowalevskii]
          Length = 1208

 Score = 70.2 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 30/198 (15%), Positives = 73/198 (36%), Gaps = 16/198 (8%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIK 131
            I +            DK+ ++Q+  +  VPV P     +  +   +        P ++K
Sbjct: 150 NIRFIGPTPEVVRKMGDKVIARQMAIAANVPVVPGTDGPVTTSEEVLKFCEQFGMPIMLK 209

Query: 132 PLKGGSSLGIIVIKKDQSIPL----DLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDAS 186
              GG   G+ V++  + +         ++ +      + IE++++    +   ++GD +
Sbjct: 210 AAYGGGGRGMRVVRNIEDVEESFVRASSEALAAFGDGSMFIEKFIERPRHIEVQILGDKT 269

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISR 245
            +V  +           ++        + PA  +   I K +   A    + +G +    
Sbjct: 270 GNVVHLWE-----RDCSVQRRHQKLVEIAPAPNLDPAIRKIMTDDAVKLAKHVGYQNAGT 324

Query: 246 SDFLFDPLSRKVFWLEIN 263
            +FL D      +++E+N
Sbjct: 325 VEFLMDEKGNH-YFIEVN 341


>gi|237814497|ref|ZP_04593495.1| acetyl-CoA carboxylase alpha chain / propionyl-CoA carboxylase
           alpha chain [Brucella abortus str. 2308 A]
 gi|237789334|gb|EEP63544.1| acetyl-CoA carboxylase alpha chain / propionyl-CoA carboxylase
           alpha chain [Brucella abortus str. 2308 A]
          Length = 678

 Score = 70.2 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 39/225 (17%), Positives = 73/225 (32%), Gaps = 22/225 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      +E   + +      A      K  +K ++   GVPV P    
Sbjct: 100 AIHPGYGFLSENPAFVDAVEEAGLIFIGPSAKAIRAMGLKDAAKALMEKAGVPVVPGYHG 159

Query: 114 NRFT----MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
           +             I+ P +IK   GG   G+  +         L     ++ +      
Sbjct: 160 DNQDGAFLKSEADRITYPVLIKARAGGGGKGMRRVDSAADFAAALESARREAEASFGDGA 219

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           +L+E+Y+     +   V GD   +               L+          PA  +  ++
Sbjct: 220 VLVEKYMAKPRHIEVQVFGDNHGNAV-----HLFERDCSLQRRHQKVIEEAPAPGMTEEM 274

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR----KVFWLEINV 264
              +   A  A   IG  G    +F+ D        + F++E+N 
Sbjct: 275 RAAMGEAAVKAALTIGYSGAGTVEFIADVSEGLRPDRFFFMEMNT 319


>gi|224825718|ref|ZP_03698822.1| Carbamoyl-phosphate synthase L chain ATP-binding [Lutiella
           nitroferrum 2002]
 gi|224601942|gb|EEG08121.1| Carbamoyl-phosphate synthase L chain ATP-binding [Lutiella
           nitroferrum 2002]
          Length = 694

 Score = 70.2 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 37/196 (18%), Positives = 74/196 (37%), Gaps = 15/196 (7%)

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD----SQHLISPPYVIKPLK 134
           +      A A    K  +K ++    VP+ P    +    D        I  P +IK   
Sbjct: 141 FIGPPASAIAAMGSKSAAKALMEKAKVPLVPGYHGDNQEPDFLKRQADAIGYPVLIKASA 200

Query: 135 GGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDV 189
           GG   G+ +++K       L     ++ +    D++L+E+Y+     +   V  D+  D 
Sbjct: 201 GGGGKGMRIVEKSDDFLAALASCQREARASFGDDKVLVEKYLTRPRHVEIQVFADSLGDC 260

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
             +           ++          PA  +P +  + +   A  A +A+G  G    +F
Sbjct: 261 VYL-----FERDCSVQRRHQKVLEEAPAPHLPTETRQAMGEAAVAAARAVGYVGAGTVEF 315

Query: 249 LFDPLSRKVFWLEINV 264
           + D  S + +++E+N 
Sbjct: 316 IMDVDSGRFYFMEMNT 331


>gi|241663321|ref|YP_002981681.1| carbamoyl phosphate synthase large subunit [Ralstonia pickettii
           12D]
 gi|240865348|gb|ACS63009.1| carbamoyl-phosphate synthase, large subunit [Ralstonia pickettii
           12D]
          Length = 1081

 Score = 70.2 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 27/198 (13%), Positives = 73/198 (36%), Gaps = 8/198 (4%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQHLISPPYV 129
           LE   +P   +       + D+ R ++++   G+   P+         +     I  P V
Sbjct: 658 LEANGVPIIGTSPDMIDAAEDRERFQKLLHELGLRQPPNRTARAEDEALKLAEEIGYPLV 717

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++ + + +   + ++   ++   +L+++++ D IE     + D    
Sbjct: 718 VRPSYVLGGRAMEIVHEPRDLERYMREAVKVSNDSPVLLDRFLNDAIECDVDCLSDGKRV 777

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                +   +       +S  ++  + P  +      E++R      +A+   G+    F
Sbjct: 778 FIGGVMEHIEQAGV---HSGDSACSLPPYSLSQATVDELKRQTAAMAKALNVIGLMNVQF 834

Query: 249 LFDPLSRK--VFWLEINV 264
                  +  V+ LE+N 
Sbjct: 835 AIQQKGGEDIVYVLEVNP 852



 Score = 62.8 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 49/285 (17%), Positives = 96/285 (33%), Gaps = 42/285 (14%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + GFKV  +              DV          V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGFKVVLVNSNPATIMTDPNTADVTYIEPITWEVVERIIAKERPDAILP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G    +  +      +L+   +    +   A   + D+ + K  ++  G+    S  
Sbjct: 89  TMGGQTALNCALDLHRHGVLKKYNVELIGASPEAIDKAEDRQKFKDAMTKIGLGSAKSGI 148

Query: 111 -------ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
                  + V             P VI+P       G  +    +       +    +  
Sbjct: 149 AHSMDEAVAVQSQIAKETGTSGYPIVIRPSFTLGGTGGGIAYNREEFEEICKRGLDLSPT 208

Query: 164 DQLLIEQYVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IP 220
           ++LLIE+ + G  E    V+ D + + +   ++   D           +S  V PA+ + 
Sbjct: 209 NELLIEESLLGWKEYEMEVVRDRADNCIIVCSIENLDPMGIHT----GDSITVAPAQTLT 264

Query: 221 LDIYKEVQRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
              Y+ ++  +    + IG   G S   F  +P   ++  +E+N 
Sbjct: 265 DKEYQILRNASLAVLREIGVDTGGSNVQFSINPQDGRMIVIEMNP 309


>gi|126739914|ref|ZP_01755605.1| carbamoyl-phosphate synthase large subunit [Roseobacter sp.
           SK209-2-6]
 gi|126719146|gb|EBA15857.1| carbamoyl-phosphate synthase large subunit [Roseobacter sp.
           SK209-2-6]
          Length = 1108

 Score = 70.2 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 46/268 (17%), Positives = 98/268 (36%), Gaps = 35/268 (13%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAI---- 71
           AL DAG++   I         D D S  L    L  +    +L     E+G +  +    
Sbjct: 601 ALTDAGYETIMINCNPETVSTDYDTSDRLYFEPLTFEHVMEILR-TEQENGTLHGVIVQF 659

Query: 72  -----------LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTM 118
                      LE   IP   +   A  L+ D+ R +++V++ G+    + +   +   +
Sbjct: 660 GGQTPLKLANSLEEHGIPILGTSPDAIDLAEDRERFQELVNNLGLKQPHNGIASTDEEAL 719

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IEL 177
                I  P VI+P        + +++    +   + ++   +    +L++ Y+ G +EL
Sbjct: 720 AIAEEIGFPLVIRPSYVLGGRAMEIVRDMDQLKRYIAEAVVVSGDSPVLLDSYLSGAVEL 779

Query: 178 TC-GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
               +     + V  I             +S  ++  + P  +  ++ +EV+       +
Sbjct: 780 DVDAICDGDQVHVAGI----MQHIEEAGVHSGDSACSLPPYSLSDEVLEEVKAQTHALAK 835

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINV 264
           A+   G+    F        +F +E+N 
Sbjct: 836 ALNVVGLMNIQFAI--KDGVIFLIEVNP 861



 Score = 55.5 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 44/291 (15%), Positives = 98/291 (33%), Gaps = 48/291 (16%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G++V  +         D                V  ++   +PD    
Sbjct: 19  SGAQACKALKEEGYRVILVNSNPATIMTDPGLADATYIEPITPEVVAKIIEKERPDALLP 78

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G  G +  +      +LE  ++    +   A  ++ D+   +  +   G+    + +
Sbjct: 79  TMGGQTGLNTSLALEEMGVLEKFDVEMIGATRDAIEMAEDRKLFRDAMDRLGIENPRATI 138

Query: 113 VN---------------RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
           V                R  +++   I  P +I+P       G  V    +         
Sbjct: 139 VTAPKNEDGSADLTEGVRIALEALEDIGLPAIIRPAFTMGGTGGGVAYNREDYEHFCRTG 198

Query: 158 SSWNHGDQLLIEQYVDG-IELTCGVMGDASL-DVTEIAVPKSDFYSYELKYSSLNSTHVL 215
              +  +Q+L+++ + G  E    V+ D +   +   ++   D           +S  V 
Sbjct: 199 MDASPVNQILVDESLLGWKEYEMEVVRDKADNAIIVCSIENIDPMGVHT----GDSITVA 254

Query: 216 PA-KIPLDIYKEVQRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           PA  +    Y+ ++  +    + IG   G S   +  +P   ++  +E+N 
Sbjct: 255 PALTLTDKEYQIMRTHSINVLREIGVETGGSNVQWAVNPDDGRMVVIEMNP 305


>gi|27364636|ref|NP_760164.1| acetyl-CoA carboxylase biotin carboxylase subunit [Vibrio
           vulnificus CMCP6]
 gi|37681320|ref|NP_935929.1| acetyl-CoA carboxylase biotin carboxylase subunit [Vibrio
           vulnificus YJ016]
 gi|27360781|gb|AAO09691.1| acetyl-CoA carboxylase, biotin carboxylase [Vibrio vulnificus
           CMCP6]
 gi|37200071|dbj|BAC95900.1| biotin carboxylase [Vibrio vulnificus YJ016]
          Length = 448

 Score = 70.2 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 81/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         +  DK+ +   +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAEQVERSGFIFVGPKADTIRMMGDKVSAITAMKKAGVPCVPGSDG 136

Query: 112 LVNRFTMDS---QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
            ++   + +      I  P +IK   GG   G+ V++K+  +   +     ++ +  + D
Sbjct: 137 PLDNDEVKNRAHAKRIGYPVIIKASGGGGGRGMRVVRKEADLVQAIAMTRAEAKAAFNND 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E++++    +   V+ D       +            K          PA  I  +
Sbjct: 197 MVYMEKFLENPRHVEVQVIADGQGGAIHLGERDCSMQRRHQK-----VVEEAPAPGITEE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + K +      A   IG RG    +FL+   + + +++E+N 
Sbjct: 252 MRKYIGERCTRACLEIGYRGAGTFEFLY--ENGEFYFIEMNT 291


>gi|116669832|ref|YP_830765.1| carbamoyl-phosphate synthase L chain, ATP-binding [Arthrobacter sp.
           FB24]
 gi|116609941|gb|ABK02665.1| biotin carboxyl carrier protein / biotin carboxylase [Arthrobacter
           sp. FB24]
          Length = 617

 Score = 70.2 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 75/220 (34%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+    A++    I +      A +   DK++++ +    G P  P    
Sbjct: 105 AIHPGYGFLAENAQFAAMVIGAGITWIGPSPEAISALGDKVQARHIAEKVGAPQVPGTAD 164

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL----DLLQSSSWNHGDQ 165
            +      ++       P  IK   GG   GI V +  + IP      + ++ +     +
Sbjct: 165 PVESAEEILEFVDKFGLPVAIKAAFGGGGRGIKVARTREEIPELFESAVREAVAAFGRGE 224

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             IE+++D    +    + DA  +V  ++           K             +  +  
Sbjct: 225 CFIERFLDAPRHVETQCLADAYGNVVVVSTRDCSLQRRNQK----LVEEAPAPFLTEEQN 280

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +   +    +  G  G    +FL       + +LE+N 
Sbjct: 281 RRLYESSKAILKEAGYLGAGTCEFLV-GQDGTISFLEVNT 319


>gi|238917647|ref|YP_002931164.1| biotin carboxylase [Eubacterium eligens ATCC 27750]
 gi|238873007|gb|ACR72717.1| biotin carboxylase [Eubacterium eligens ATCC 27750]
          Length = 428

 Score = 70.2 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 33/220 (15%), Positives = 72/220 (32%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+       E   + +        +   DK  ++Q++  CGVPV P    
Sbjct: 54  AVHPGYGFLSENAAFARKCEENNLIFIGPSADIISSMGDKQSARQLMIECGVPVVPGSDG 113

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS-----SSWNHGD 164
            +            I  P +IK   GG   G+      + I      +     +++ + D
Sbjct: 114 LVATAEEAAHIAEKIGYPVLIKASAGGGGKGMRKAFSREDIENAFETAKSEAKAAFGNDD 173

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             + +  ++   +   ++ D   +   +            K           A++  D  
Sbjct: 174 MYIEKLIINPRHIEIQILADKYGNTIYLGERDCSIQRNNQKLL----EEAPSARLCKDQR 229

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +   A  A +A G       +F+ +      +++E+N 
Sbjct: 230 TVMGETAVRAAKAAGYYSAGTVEFVVNEQ-GDYYFIEMNT 268


>gi|157838095|pdb|1A9X|A Chain A, Carbamoyl Phosphate Synthetase: Caught In The Act Of
           Glutamine Hydrolysis
 gi|157838096|pdb|1A9X|C Chain C, Carbamoyl Phosphate Synthetase: Caught In The Act Of
           Glutamine Hydrolysis
 gi|157838097|pdb|1A9X|E Chain E, Carbamoyl Phosphate Synthetase: Caught In The Act Of
           Glutamine Hydrolysis
 gi|157838098|pdb|1A9X|G Chain G, Carbamoyl Phosphate Synthetase: Caught In The Act Of
           Glutamine Hydrolysis
          Length = 1073

 Score = 70.2 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 97/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D +              V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVINVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +    Q +LE   +    +   A   + D+ R    +   G+    S +
Sbjct: 89  TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGI 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     +     +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHTMEEALAVAADVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + +   +   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIEN----FDAMGIHTGDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RNASMAVLREIGVETGGSNVQFAVNPKNGRLIVIEMNP 302



 Score = 57.1 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 29/197 (14%), Positives = 73/197 (37%), Gaps = 10/197 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYV 129
           LE   +P   +   A   + D+ R +  V    +    +  V    M  +    I  P V
Sbjct: 654 LEAAGVPVIGTSPDAIDRAEDRERFQHAVERLKLKQPANATVTAIEMAVEKAKEIGYPLV 713

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++         + ++  +  +      + S ++   +L++ ++ D +E+    + D  + 
Sbjct: 714 VRASYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDDAVEVDVDAICDGEMV 773

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           +    +   +    +    S +S   LPA  +  +I   +++        +  RG+    
Sbjct: 774 LIGGIMEHIE----QAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRGLMNVQ 829

Query: 248 FLFDPLSRKVFWLEINV 264
           F     + +V+ +E+N 
Sbjct: 830 FAV--KNNEVYLIEVNP 844


>gi|149910016|ref|ZP_01898664.1| biotin carboxylase (A subunit of acetyl-CoA carboxylase)(ACC)
           [Moritella sp. PE36]
 gi|149806884|gb|EDM66845.1| biotin carboxylase (A subunit of acetyl-CoA carboxylase)(ACC)
           [Moritella sp. PE36]
          Length = 452

 Score = 70.2 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 36/222 (16%), Positives = 79/222 (35%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         L  DK+ +   +   GVP  P    
Sbjct: 77  AIHPGYGFLAENADFAEQVEQSGFIFIGPKAETIRLMGDKVSAIAAMKKAGVPCVPGSDG 136

Query: 112 ---LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGD 164
                 +   +    I  P +IK   GG   G+ V+ ++  +   +     ++ ++   D
Sbjct: 137 PLDTDAQRNKNIAKRIGYPIIIKAAGGGGGRGMRVVHEESKLLDSIALTRNEAGTFFGND 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E++++    +   ++ D   +   +           L+          PA  I  D
Sbjct: 197 MVYMEKFLENPRHVEVQILADGQGNAIYLGE-----RDCSLQRRHQKVVEEAPAPGITAD 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           I + +      A   I  RG    +FL+   + + +++E+N 
Sbjct: 252 IRRHIGERCSRACVDINYRGAGTFEFLY--ENGEFYFIEMNT 291


>gi|121706890|ref|XP_001271664.1| pyruvate carboxylase, putative [Aspergillus clavatus NRRL 1]
 gi|119399812|gb|EAW10238.1| pyruvate carboxylase, putative [Aspergillus clavatus NRRL 1]
          Length = 1193

 Score = 70.2 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 85/221 (38%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
           ++H  +G   E+      +E   I +            DK+ ++Q+   CGVPV P    
Sbjct: 120 LIHPGYGFLSENSEFARKVEQAGIVFVGPTPETIEALGDKVSARQLAIKCGVPVVPGTPG 179

Query: 112 LVNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGDQ 165
            V R+    +       P +IK   GG   G+ V++    +         ++ S      
Sbjct: 180 PVERYEEVKEFTDKYGFPIIIKAAFGGGGRGMRVVRDQADLRDSFERATSEARSAFGNGT 239

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDI 223
           + +E+++D    +   ++GD   +V              ++        + PA  +P D+
Sbjct: 240 VFVERFLDRPKHIEVQLLGDNHGNVV-----HLFERDCSVQRRHQKVVEIAPAKDLPADV 294

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              +   A    +++  R    ++FL D  +R  +++EIN 
Sbjct: 295 RDRLLADAVKLAKSVSYRNAGTAEFLVDQQNR-YYFIEINP 334


>gi|325192942|emb|CCA27327.1| unnamed protein product [Albugo laibachii Nc14]
          Length = 1182

 Score = 70.2 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 36/222 (16%), Positives = 76/222 (34%), Gaps = 20/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+        L  I +            DK  ++ +     VPV P    
Sbjct: 106 AIHPGYGFLSENVEFAKQCALHNIIFVGPTPENLKRFGDKTAARAMAIKNNVPVIPGTDG 165

Query: 111 --ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL----DLLQSSSWNHGD 164
               + +        ++ P +IK   GG   G+ V+ +++ +         ++ +     
Sbjct: 166 PVRSLEQARQFIDSGVNYPIIIKASMGGGGRGMRVVMREEELEESFHRASSEALAAFGDG 225

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLD 222
            + IE+Y++    +   ++GD + +V              ++          PA  +P D
Sbjct: 226 TIFIERYLEKPRHIEVQILGDGNGNVV-----HLHHRDCSVQRRHQKVLETAPAVGLPSD 280

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             K +   A    +A         +FL D      +++E+N 
Sbjct: 281 TEKALMEDAVRLTKASNYLNAGTVEFLVDEKGNH-YFIEVNP 321


>gi|301620693|ref|XP_002939702.1| PREDICTED: LOW QUALITY PROTEIN: acetyl-CoA carboxylase-like
           [Xenopus (Silurana) tropicalis]
          Length = 2298

 Score = 70.2 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 35/211 (16%), Positives = 74/211 (35%), Gaps = 12/211 (5%)

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVNR 115
           G+  E+  +  +L    I +      A     DK+ S  V  + G+P  P          
Sbjct: 210 GHASENPKLPELLLKNGIAFMGPPSQAMWALGDKIASSIVAQTAGIPTLPWSGSGEETLS 269

Query: 116 FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ-YVDG 174
           +  D+  ++  P +IK  +GG   GI  +   +  P    Q  +   G  + + +     
Sbjct: 270 YEQDAAEVVGYPVMIKASEGGGGKGIRKVNNAEDFPNLFRQVQAEVPGSPIFVMRLAKQS 329

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFL 233
             L   ++ D   +               ++          PA I    I++++++ A  
Sbjct: 330 RHLEVQILSDQYGNAI-----SLFGRDCSVQRRHQKIIEEAPASIATATIFEQMEQCAVK 384

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             + +G       ++L+       ++LE+N 
Sbjct: 385 LAKMVGYVSAGTVEYLYS-QDGSFYFLELNP 414


>gi|162149109|ref|YP_001603570.1| carbamoyl phosphate synthase large subunit [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209545147|ref|YP_002277376.1| carbamoyl phosphate synthase large subunit [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|161787686|emb|CAP57282.1| putative carbamoyl-phosphate synthase large chain
           [Gluconacetobacter diazotrophicus PAl 5]
 gi|209532824|gb|ACI52761.1| carbamoyl-phosphate synthase, large subunit [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 1084

 Score = 70.2 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 45/278 (16%), Positives = 96/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D                V  ++   KPD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPGLADATYVEPITPEFVERIILREKPDAILP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +       L+   +    +       + D+ + ++ + + G+    S++
Sbjct: 89  TMGGQTALNTAMALDKSGFLKEHGVELIGADAEVIDRAEDRQKFREAMDAIGIESPRSVI 148

Query: 113 VNRFTMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +        L  +  P VI+P       G  +    +     +      +   ++LIE+
Sbjct: 149 AHTLDEARAALEQVGLPAVIRPSFTMGGSGGGIAYNREEFDQIVASGLDASPTTEVLIEE 208

Query: 171 YVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEV 227
            V G  E    V+ D++ + +   ++   D           +S  V PA  +    Y+ +
Sbjct: 209 SVLGWKEFEMEVVRDSADNCIIVCSIENIDPMGVHT----GDSITVAPALTLTDKEYQRM 264

Query: 228 QRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
           +  +    +AIG   G S   F  +P   ++  +E+N 
Sbjct: 265 RDASLACLRAIGVDTGGSNVQFGVNPADGRMVVIEMNP 302



 Score = 59.4 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 76/220 (34%), Gaps = 16/220 (7%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           LE   IP   +   A   + D+ R + ++   G+    + +        D    I  P V
Sbjct: 659 LEAAGIPLLGTPADAIDRAEDRERFQAMLHKLGLRQPDNGIARTAAEAEDVAERIGYPVV 718

Query: 130 IKPLKGGSSLGIIVIKKDQSIPL----DLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGD 184
           I+P        + ++    S+       L  +        +LI++Y+ D IE     + D
Sbjct: 719 IRPSYVLGGRAMEIVHDRASLQRYMRVALQLAGHDIASGPVLIDRYLNDAIEADVDCISD 778

Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244
                    +   +       +S  ++  + P  +   I  E++       + +G  G+ 
Sbjct: 779 GHTVYVAGVMEHIEEAGI---HSGDSACSLPPYTLSPAIVTELKEQTEAMARELGIVGL- 834

Query: 245 RSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
             +  +    + +F LE+N +   T     P +A   G  
Sbjct: 835 -MNVQYAIKDQDIFVLEVNPRASRT----VPFVAKATGVP 869


>gi|5821976|pdb|1CE8|A Chain A, Carbamoyl Phosphate Synthetase From Escherichis Coli With
           Complexed With The Allosteric Ligand Imp
 gi|5821978|pdb|1CE8|C Chain C, Carbamoyl Phosphate Synthetase From Escherichis Coli With
           Complexed With The Allosteric Ligand Imp
 gi|5821980|pdb|1CE8|E Chain E, Carbamoyl Phosphate Synthetase From Escherichis Coli With
           Complexed With The Allosteric Ligand Imp
 gi|5821982|pdb|1CE8|G Chain G, Carbamoyl Phosphate Synthetase From Escherichis Coli With
           Complexed With The Allosteric Ligand Imp
 gi|22219401|pdb|1M6V|A Chain A, Crystal Structure Of The G359f (Small Subunit) Point
           Mutant Of Carbamoyl Phosphate Synthetase
 gi|22219403|pdb|1M6V|C Chain C, Crystal Structure Of The G359f (Small Subunit) Point
           Mutant Of Carbamoyl Phosphate Synthetase
 gi|22219405|pdb|1M6V|E Chain E, Crystal Structure Of The G359f (Small Subunit) Point
           Mutant Of Carbamoyl Phosphate Synthetase
 gi|22219407|pdb|1M6V|G Chain G, Crystal Structure Of The G359f (Small Subunit) Point
           Mutant Of Carbamoyl Phosphate Synthetase
          Length = 1073

 Score = 70.2 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 97/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D +              V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVINVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +    Q +LE   +    +   A   + D+ R    +   G+    S +
Sbjct: 89  TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGI 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     +     +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHTMEEALAVAADVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + +   +   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIEN----FDAMGIHTGDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RNASMAVLREIGVETGGSNVQFAVNPKNGRLIVIEMNP 302



 Score = 60.5 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 30/197 (15%), Positives = 74/197 (37%), Gaps = 10/197 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYV 129
           LE   +P   +   A   + D+ R +  V    +    +  V    M  +    I  P V
Sbjct: 654 LEAAGVPVIGTSPDAIDRAEDRERFQHAVERLKLKQPANATVTAIEMAVEKAKEIGYPLV 713

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  +  +      + S ++   +L++ ++ D +E+    + D  + 
Sbjct: 714 VRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDDAVEVDVDAICDGEMV 773

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           +    +   +    +    S +S   LPA  +  +I   +++        +  RG+    
Sbjct: 774 LIGGIMEHIE----QAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRGLMNVQ 829

Query: 248 FLFDPLSRKVFWLEINV 264
           F     + +V+ +E+N 
Sbjct: 830 FAV--KNNEVYLIEVNP 844


>gi|145220244|ref|YP_001130953.1| carbamoyl-phosphate synthase large subunit [Prosthecochloris
           vibrioformis DSM 265]
 gi|145206408|gb|ABP37451.1| carbamoyl-phosphate synthase large subunit [Chlorobium
           phaeovibrioides DSM 265]
          Length = 492

 Score = 70.2 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 47/278 (16%), Positives = 99/278 (35%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G++V  +         D+D              V  ++   KPD    
Sbjct: 29  SGTQACRALKEDGYRVILVNSNPATIMTDIDLADATYIEPITPEYVQKIIEKEKPDALLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  V      ILE   +    + + A   + ++      +   G+ +     
Sbjct: 89  TMGGQTALNTAVSLAESGILERNGVELIGAKLRAIRKAENRELFSDAMKKLGLEMAKGFF 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           V   +   ++   I  P +I+P       G    +        +    + +   ++L+E+
Sbjct: 149 VRNEKEAREALEEIGLPIIIRPSFTLGGTGGGFAETKAEYYDAVRHGLAESPIGEVLVEE 208

Query: 171 YVDG-IELTCGVMGDASLDV-TEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + +V    ++   D           +S  V PA+ +    Y+E+
Sbjct: 209 CLFGWKEYELEVIRDLADNVIIVCSIENVDPMGVHT----GDSITVAPAQTLSDRQYQEL 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RDASVRIIREIGVETGGSNIQFAINPENGRIVIIEMNP 302


>gi|126439288|ref|YP_001058237.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia
           pseudomallei 668]
 gi|171855115|sp|A3N7B6|PURT_BURP6 RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|126218781|gb|ABN82287.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia
           pseudomallei 668]
          Length = 404

 Score = 70.2 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 48/277 (17%), Positives = 92/277 (33%), Gaps = 38/277 (13%)

Query: 19  GKACASALEDAGFKVSQID----------------VDRSVGLVLAHL----KPDLAFNVL 58
           GK    AL+  G +V  +D                +D +    L  L    +P L    +
Sbjct: 27  GKEVIIALQRLGVEVIAVDRYPNAPGHQVAHRAHVIDMTDPDALRALVDAERPHLVVPEI 86

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKM-RSKQVVSSCGVPVCPSILVNRFT 117
                 D L  A +E   +        A+ L+M++    +      G+P  P      F 
Sbjct: 87  EAI-ATDAL--AAIEAAGVCEVIPTARATQLTMNREGIRRLAAEELGLPTSPYAFAQSFD 143

Query: 118 MDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH--GDQLLIEQYV- 172
             +  +  I  P V+KP+   S  G  V++ +  I      + +       ++++E ++ 
Sbjct: 144 EFAAAVARIGFPCVVKPVMSSSGKGQSVVRSEADIEPAWRYAMAGGRVNHGRVIVEGFIR 203

Query: 173 ---DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
              +  +LT   +  AS                   Y         P  +     +  + 
Sbjct: 204 FDYEITQLTVRAIDPASGQTRTSFCAPIGHLQVAGDY----VESWQPQPMSAKALERARD 259

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
           +A     A+G RGI   +         V++ E++ +P
Sbjct: 260 IAHRVTSALGGRGIFGVELFVR--GDDVWFSEVSPRP 294


>gi|46125395|ref|XP_387251.1| hypothetical protein FG07075.1 [Gibberella zeae PH-1]
          Length = 1552

 Score = 70.2 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 88/221 (39%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
           ++H  +G   E+      +E   + +            DK+ ++++ ++  VPV P    
Sbjct: 107 MIHPGYGFLSENAEFARKVEKAGLIFVGPSPEVIDSLGDKVSARKLANAANVPVVPGTQG 166

Query: 112 LVNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGDQ 165
            V R+    D       P +IK   GG   G+ V+++ +S+         ++ +      
Sbjct: 167 AVERYEEVKDFTDKYGFPIIIKAAFGGGGRGMRVVREQESLKESFERATSEAKTAFGNGT 226

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDI 223
           + +E+++D    +   ++GD   ++  +           ++        + PA  +P ++
Sbjct: 227 VFVERFLDKPKHIEVQLLGDNHGNIVHLYE-----RDCSVQRRHQKVVEIAPAKDLPSEV 281

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              +   A    +  G R    ++FL D  +R  +++EIN 
Sbjct: 282 RDNILSDAVRLAKTAGYRNAGTAEFLVDQQNRH-YFIEINP 321


>gi|324501365|gb|ADY40611.1| Pyruvate carboxylase 1 [Ascaris suum]
          Length = 1189

 Score = 70.2 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 77/220 (35%), Gaps = 19/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E        E   I +        A   DK+ ++Q     GV V P    
Sbjct: 122 AIHPGYGFLSERSDFAQACEDAGIVFIGPAPKVMARMGDKVAARQAALESGVKVVPGTPG 181

Query: 114 NRFTMDSQHLI----SPPYVIKPLKGGSSLGIIVIKKD----QSIPLDLLQSSSWNHGDQ 165
              T++           P ++K   GG   G+  +  +    +S      ++ S      
Sbjct: 182 PVTTVEEVRAFVKEHGTPIILKAAYGGGGRGMRRVDNEKDVKESFERAFSEALSSFGDGS 241

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           L +E++++    +   + GD   ++  +           ++        + PA  +P  +
Sbjct: 242 LFVEKFIERPRHIEVQIFGDNYGNIVHLYE-----RDCSVQRRHQKVVEIAPAPALPPGV 296

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            + +   A    + +G       +FL D  + K +++E+N
Sbjct: 297 RENILNDALKIARHVGYNNAGTVEFLVD-RNGKHYFIEVN 335


>gi|323144118|ref|ZP_08078757.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Succinatimonas
           hippei YIT 12066]
 gi|322416095|gb|EFY06790.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Succinatimonas
           hippei YIT 12066]
          Length = 460

 Score = 70.2 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 83/221 (37%), Gaps = 21/221 (9%)

Query: 58  LHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI--L 112
           +H  +G   E+     ++E     +         L  DK+ +K+ +   GVP  P     
Sbjct: 79  IHPGYGFLSENADFAEMVEKSGFIFIGPTADTIRLMGDKVSAKKAMQRAGVPCVPGSEGA 138

Query: 113 VNRFTMDSQHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
           +   + ++  L   I  P +IK   GG   G+ V++ D  +   +     ++  + +   
Sbjct: 139 LGDDSKENHRLANEIGYPIIIKAAGGGGGRGMRVVRSDAELDDAIALTRREADMFFNNPA 198

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           + +E++++    +   V+ D   +   +            K          PA  I  + 
Sbjct: 199 VYMEKFLENPRHIEFQVLSDTHGNAVYLGERDCSMQRRNQK-----VLEEAPAPFITAEQ 253

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            K +      A   IG RG    +FL+   + + +++E+N 
Sbjct: 254 RKSIGERCAKACVDIGYRGAGTFEFLY--ENGEFYFIEMNT 292


>gi|269926748|ref|YP_003323371.1| acetyl-CoA carboxylase, biotin carboxylase [Thermobaculum terrenum
           ATCC BAA-798]
 gi|269790408|gb|ACZ42549.1| acetyl-CoA carboxylase, biotin carboxylase [Thermobaculum terrenum
           ATCC BAA-798]
          Length = 453

 Score = 70.2 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 78/220 (35%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+  +  I E + I +      A     DK  ++Q +   GVP+ P    
Sbjct: 77  AIHPGYGFLSENTYLCEICERIGITFIGPPRHAIEQMSDKAMARQAMKEAGVPIIPGTEE 136

Query: 114 NRFTMDSQHL----ISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGDQ 165
               ++        I  P ++K + GG   G+ V+   + +     +   ++ +     +
Sbjct: 137 PVSNLERAARIARDIGYPVLLKAVAGGGGRGMRVVHTPEELASTFEVASSEADAAFKDGR 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           L IE+Y+D    +   ++ D    V  +            K             +     
Sbjct: 197 LYIEKYLDRPRHVEVQIIADKYGKVLHLGERDCSVQRRHQK----LIEESPAPNLSNRTR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + + + A    + I    +   +FL D    K +++E+N 
Sbjct: 253 EAIHKAAIKGAKHIRFHNVGTFEFLVDQQE-KFYFIEVNT 291


>gi|239827673|ref|YP_002950297.1| acetyl-CoA carboxylase biotin carboxylase subunit [Geobacillus sp.
           WCH70]
 gi|239807966|gb|ACS25031.1| acetyl-CoA carboxylase, biotin carboxylase [Geobacillus sp. WCH70]
          Length = 450

 Score = 70.2 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 83/221 (37%), Gaps = 18/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     +     I +      A      K  +++ +   GVP+ P    
Sbjct: 77  AIHPGYGFLAENAAFAELCRECNITFIGPSPEAITKMGIKDVARETMREAGVPIVPGSKG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGD 164
            I      +   + I  P +IK   GG   GI V + +Q +   +       ++++    
Sbjct: 137 IIESVDEAIALANEIGYPVIIKATAGGGGKGIRVARNEQELVKGINITQQEAATAFG-NP 195

Query: 165 QLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            + IE+Y++    +   V+ D+  ++  +            K             +  + 
Sbjct: 196 GVYIEKYIEDFRHVEIQVLADSYGNIIHLGERDCSIQRRLQK----LVEEAPSPALDEET 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +++ + A  A +A+   G    +F++D   +K +++E+N 
Sbjct: 252 RQKMGQAAVQAARAVNYTGAGTVEFIYDHNEKKFYFMEMNT 292


>gi|163794417|ref|ZP_02188388.1| Carbamoylphosphate synthase large subunit [alpha proteobacterium
           BAL199]
 gi|159180141|gb|EDP64664.1| Carbamoylphosphate synthase large subunit [alpha proteobacterium
           BAL199]
          Length = 1089

 Score = 70.2 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 48/282 (17%), Positives = 99/282 (35%), Gaps = 43/282 (15%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D                V  V+   +PD    
Sbjct: 29  SGTQACKALREEGYRVILVNSNPATIMTDPGMADATYIEPITPEMVRRVIERERPDALLP 88

Query: 57  VLHGN--------FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
            + G            DG     LE   +    + + A   + D+ + +  + + G+   
Sbjct: 89  TMGGQTALNIARALARDGT----LEEFGVELIGADLAAIEKAEDRQQFRVAMDAIGLDTP 144

Query: 109 PSILVNRFTMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQL 166
            S ++ +F   ++ L  +  P +I+P       G  +    +     +      +  +++
Sbjct: 145 RSRMIGKFEEAAEALDHVGLPAIIRPSYTMGGQGGGIAYNREEFEQIVQNGLRLSPSNEV 204

Query: 167 LIEQYVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDI 223
           L+E+ V G  E    V+ D + + +   ++   D           +S  V PA  +    
Sbjct: 205 LVEESVLGWKEFEMEVIRDRADNCIIVCSIENIDPMGIHT----GDSMTVAPALTLTDKE 260

Query: 224 YKEVQRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
           Y+ ++  +    + IG   G S   F  DP + +   +E+N 
Sbjct: 261 YQRMRNASIAVLREIGVDTGGSNVQFAVDPATGRQIVIEMNP 302



 Score = 59.0 bits (142), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 52/292 (17%), Positives = 101/292 (34%), Gaps = 39/292 (13%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHG--NFGE--------D 65
           AL DAGF+   +         D D S  L    L  +    ++ G    GE         
Sbjct: 599 ALSDAGFETIMVNCNPETVSTDYDTSDRLYFEPLTIEDVIELVDGERANGEVLGVIVQFG 658

Query: 66  GL----VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS- 120
           G     + A LE  +IP   +   A  L+ D+ R ++++    +    +           
Sbjct: 659 GQTPLKLAAALEKAQIPILGTSPDAIDLAEDRERFQKLLHKLKLRQPENGTATSTEQAEK 718

Query: 121 -QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV---DGIE 176
               I  P VI+P        + ++   + +   +  +   +  + +LI+ ++     I+
Sbjct: 719 VADTIGYPVVIRPSYVLGGRAMEIVHDIEGLRRYMSNAVVVSGKNPVLIDSFLRSATEID 778

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +     G        +   +         +S  ++  + P  +P  I  EV+R   +   
Sbjct: 779 VDAVCDGTDVFIAGVMEHIEEAGI-----HSGDSACSLPPVSLPDSIIAEVKRQTTMLAH 833

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
            +G  G+    F       +VF LE+N +   T     P +A   G    ++
Sbjct: 834 GLGVVGLMNVQFAV--KDGEVFILEVNPRASRT----VPFVAKATGVPIAKI 879


>gi|16126407|ref|NP_420971.1| acetyl/propionyl-CoA carboxylase subunit alpha [Caulobacter
           crescentus CB15]
 gi|221235187|ref|YP_002517623.1| methylcrotonyl-CoA carboxylase biotin-containing subunit
           [Caulobacter crescentus NA1000]
 gi|13423663|gb|AAK24139.1| acetyl/propionyl-CoA carboxylase, alpha subunit [Caulobacter
           crescentus CB15]
 gi|220964359|gb|ACL95715.1| methylcrotonyl-CoA carboxylase biotin-containing subunit
           [Caulobacter crescentus NA1000]
          Length = 654

 Score = 70.2 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 90/227 (39%), Gaps = 26/227 (11%)

Query: 57  VLHGNFG---EDGLV-QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            +H  +G   E+    Q++++   + +      A      K  +K V+   GVP  P  L
Sbjct: 77  AIHPGYGFLSENAEFAQSVID-AGLVWIGPPPSAIRAMGLKDAAKAVMIKAGVPTTPGYL 135

Query: 113 -----VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHG 163
                V R T+++   I  P +IK + GG   G+  +++ +     L     ++S+    
Sbjct: 136 GEDQSVERLTVEAAK-IGYPVLIKAVAGGGGKGMRKVERAEDFEAALGSCRREASAAFGD 194

Query: 164 DQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPL 221
           D++L+E+YV     +   V GD+  +V              L+          PA  +  
Sbjct: 195 DRVLLEKYVTRPRHIEVQVFGDSHGNVV-----HLFERDCSLQRRHQKVIEEAPAPGMDE 249

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR----KVFWLEINV 264
              + V   A  A QA+   G    +F+ D        +++++E+N 
Sbjct: 250 ATREAVCAAAVKAAQAVNYVGAGTVEFIADASEGLRADRIWFMEMNT 296


>gi|291531168|emb|CBK96753.1| carbamoyl-phosphate synthase large subunit [Eubacterium siraeum
           70/3]
          Length = 1075

 Score = 70.2 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 48/277 (17%), Positives = 99/277 (35%), Gaps = 34/277 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL+  G+++  +         D D              +  ++   +PD    
Sbjct: 32  SGTQACKALKKLGYEIVLVNSNPATIMTDPDVADITYIEPLNLDRLTQIIEQERPDALLP 91

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G  G +   +     +L+   +      + A     D++  K  +   G+ +  S +
Sbjct: 92  NLGGQSGLNLCSELDKAGVLKKFNVQVIGVQVDAIERGEDRIEFKNAMKDLGIGMPRSEV 151

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     +  P V++P       G  ++     + +   +    +   Q+L+E+
Sbjct: 152 AYTIDEAVKIAEELKYPVVLRPAYTMGGAGGGMVYNVDELKVVCERGLQASLVGQVLVEE 211

Query: 171 YVDG-IELTCGVMGDASL-DVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEV 227
            + G  EL   V+ DA    +T   +   D           +S    P   IP D+ KE+
Sbjct: 212 CIFGWEELELEVVRDADNNKITVCFIENIDPIGVHT----GDSFCSAPMLTIPEDVQKEL 267

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           Q +++   ++I   G     F  +P + ++  +EIN 
Sbjct: 268 QEMSYRIIESIEVIGGCNCQFARNPETGRIVVIEINP 304



 Score = 57.4 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/226 (13%), Positives = 81/226 (35%), Gaps = 14/226 (6%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-ILVN-RFTMDSQHLISPPYV 129
           L+   +    +      L+ D+   + ++   G+P+  S + VN    ++  + I  P +
Sbjct: 650 LKKYGVNILGTTPETIDLAEDRDHFRAMMDKLGIPMPESGMAVNVDEALEIANRIGYPVM 709

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P       G+ ++  D+ + + +  +        +LI++++    E     + D    
Sbjct: 710 VRPSYVLGGRGMEIVHDDEMMKVYMSAAVGVTPDRPILIDRFLHHATECEADAISDGK-- 767

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
                VP    +       S +S  +LP+  +       ++         +   G+   +
Sbjct: 768 --NCFVPAVMEHIELAGVHSGDSACILPSLNLTEKQVTTIKDYTKKIAVEMNVCGL--MN 823

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
             +      V+ LE N +   T     P ++     +  +L   ++
Sbjct: 824 MQYAIEDDTVYVLEANPRASRT----VPLVSKVCNINMVQLATQII 865


>gi|218892030|ref|YP_002440897.1| methylcrotonyl-CoA carboxylase, alpha-subunit (biotin-containing)
           [Pseudomonas aeruginosa LESB58]
 gi|218772256|emb|CAW28038.1| methylcrotonyl-CoA carboxylase, alpha-subunit (biotin-containing)
           [Pseudomonas aeruginosa LESB58]
          Length = 655

 Score = 70.2 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 77/220 (35%), Gaps = 19/220 (8%)

Query: 58  LHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
           +H  +G   E+       E   + +      A      K  +K ++   GVP+ P     
Sbjct: 84  IHPGYGFLSENADFARACEEASLLFLGPPAAAIDAMGSKSAAKALMEEAGVPLVPGYHGE 143

Query: 115 RFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGDQL 166
               +        I  P ++K   GG   G+ V++ +  +   L     ++ +     ++
Sbjct: 144 AQDAETFRREAGRIGYPVLLKAAAGGGGKGMKVVEHEAELAEALSSAQREAKAAFGDARM 203

Query: 167 LIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIY 224
           L+E+Y +    +   V  D       +            K          PA  +  ++ 
Sbjct: 204 LVEKYLLKPRHVEIQVFADRHGHCLYLNERDCSIQRRHQK-----VVEEAPAPGLGAELR 258

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +   A  A QAIG  G    +FL D    + F++E+N 
Sbjct: 259 RAMGEAAVRAAQAIGYVGAGTVEFLLDER-GQFFFMEMNT 297


>gi|28200301|gb|AAO27903.1| pyruvate carboxylase [Bos taurus]
          Length = 1178

 Score = 70.2 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 30/233 (12%), Positives = 74/233 (31%), Gaps = 17/233 (7%)

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
            +  V      D      +G   E        +   + +            DK+ ++ + 
Sbjct: 101 DIIKVAKENNVDAVHPG-YGFLSERADFAQACQDAGVRFIGPSPEVVRKIGDKVEARTIA 159

Query: 101 SSCGVPVCPSILVNRFTMDSQHLI----SPPYVIKPLKGGSSLGIIVIKKDQSIPL---- 152
            +  VPV P       ++   H        P + K   GG   G+ V+   + +      
Sbjct: 160 IAADVPVVPGTNAPITSLHEAHEFSNTYGFPIIFKAAYGGGGRGMRVVHSYEELEENYTR 219

Query: 153 DLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
              ++ +      L +E++++    +   ++GD   ++  +            K      
Sbjct: 220 AYSEALAAFGNGALFVEKFIEKPRHIEVQILGDQYGNILHLYERDCSIQRRHQK-----V 274

Query: 212 THVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
             + P A +   +   +   +    + +G       +FL D   +  +++E+N
Sbjct: 275 VEIAPAAHLDPQLRTRLTSDSVKLAKQVGYENAGTVEFLVDRHGKH-YFIEVN 326


>gi|56964318|ref|YP_176049.1| carbamoyl phosphate synthase large subunit [Bacillus clausii
           KSM-K16]
 gi|56910561|dbj|BAD65088.1| arginine-specific carbamoyl-phosphate synthase large chain
           [Bacillus clausii KSM-K16]
          Length = 1049

 Score = 70.2 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 51/287 (17%), Positives = 107/287 (37%), Gaps = 35/287 (12%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQIDVD---------------------RSVGLV 45
           G ++E + S   G     AL++ G +V  ++ +                      +V  +
Sbjct: 20  GQAAEFDYS---GTQGCLALKEEGIRVVLLNPNPATVMTDDSCADTVYFEPLSVETVVNI 76

Query: 46  LAHLKPDLAFNVLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
               KPD     L G  G +  +    Q +L    +    + I +     D+ + + ++ 
Sbjct: 77  FEREKPDGLLATLGGQTGLNLALKLHEQGLLAAYGVELLGTPIESIQKGEDREQFRALMH 136

Query: 102 SCGVPVCPSILVNR--FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
               PV  S +V+     +        P +++P       G  +   ++ +   +    +
Sbjct: 137 QLNEPVPDSEIVHSASEALRFAEQAGYPIIVRPAYTLGGAGGGIADCEKELKAIIENGLA 196

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   Q LIE+ + G  E+   VM D +   T I V   +     +   + +S  V P++
Sbjct: 197 QSPISQCLIEKSIAGFKEIEYEVMRDEND--TCITVCNMENID-PVGIHTGDSIVVAPSQ 253

Query: 219 -IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +    Y+ ++  +    +A+G  G     F  DP S + + +E+N 
Sbjct: 254 TLTDKDYQMLRAASLKIIRALGIIGGCNIQFALDPNSDRYYLIEVNP 300



 Score = 65.5 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 42/219 (19%), Positives = 82/219 (37%), Gaps = 14/219 (6%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYV 129
           LE   +P          +  D+ R    +++ GVP  P    N              P +
Sbjct: 648 LEEAGLPVLGVSADTIDMLEDRQRFYAFMNNIGVPHIPGETANDLEDACCRAKATGYPVL 707

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           ++P       G+ ++  +  +    LQ+  ++    LLI+ +++GIE+   V+ D     
Sbjct: 708 LRPSYVIGGQGMALVSSENELTS-YLQNHEYSGLFPLLIDHFIEGIEIDVDVLTDGK--- 763

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
             I +     +  +    S +ST V P   +   +  +++  A      I  RG+    F
Sbjct: 764 -SIRIAGMFEHVEKAGVHSGDSTAVTPPHTLSASMLAQLEEAAKKIATGIHFRGLFNIQF 822

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287
           +      + + +E+N +   T     P +A   G  F E
Sbjct: 823 VV--AGDRYYVIEVNPRASRT----VPLLAKIYGEPFVE 855


>gi|116492708|ref|YP_804443.1| carbamoyl-phosphate synthase large subunit [Pediococcus pentosaceus
           ATCC 25745]
 gi|116102858|gb|ABJ68001.1| carbamoyl-phosphate synthase large subunit [Pediococcus pentosaceus
           ATCC 25745]
          Length = 818

 Score = 70.2 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 53/285 (18%), Positives = 97/285 (34%), Gaps = 30/285 (10%)

Query: 26  LEDAGFKVSQIDVD---RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ--------AILEL 74
           +      V  I+ +    S+  +L   + D+   V     G    +Q         IL+ 
Sbjct: 54  IPRLDVDVKFIEAELTVNSLIQILRENEIDVILPVA----GNTVALQLSEQLNESGILKE 109

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQHLISPPYVIKP 132
           L +              +     +V+     P  P+ +V   T  +     +  P +IKP
Sbjct: 110 LNVRTMGVTTTTIHNINNPELMNRVLKHIKEPTIPTTVVENVTDALRFAKRVGFPVLIKP 169

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWN--HGDQLLIEQYVDG-IELTCGVMGDASLDV 189
           +   S      IK D    L  +  S++     +Q+ +E+ V G  E+   V+ DA    
Sbjct: 170 IA--SLTKTNRIKCDNEHQLMEMLESAFKVSITNQVAVEKSVVGYKEIEMIVIRDAEGSK 227

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY-KEVQRLAFLAHQAIGCRGISRSDF 248
             I   ++          S +S    P +   D+  + ++  A    + +  +G+    F
Sbjct: 228 LLINGGENFNPIGVH---SGDSIIFSPTQTLTDVEFQSLRTAALKIAEILKIKGVCHVQF 284

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
             DP   K F   IN        S F   A   GY    ++  ++
Sbjct: 285 ALDPTDGKHFITRINPF--FDRSSAF--AARATGYPIANVVAKIL 325


>gi|312793358|ref|YP_004026281.1| phosphoribosylaminoimidazole carboxylase, atpase subunit
           [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312180498|gb|ADQ40668.1| phosphoribosylaminoimidazole carboxylase, ATPase subunit
           [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 403

 Score = 70.2 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 41/201 (20%), Positives = 76/201 (37%), Gaps = 16/201 (7%)

Query: 69  QAILELLEIPY-THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPP 127
           Q + +L +  Y  +       +  DK + KQ+  +  +PV     V    +        P
Sbjct: 104 QVLRDLYDKGYQIYPSPYCLEIIQDKYKQKQMFKNANLPVPRFEKVTHLDVSFFEKFGFP 163

Query: 128 YVIKPLKGG-SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDA 185
            V K  KGG    G++VIK  + +   L   S         +E+ VD   EL   V  + 
Sbjct: 164 CVQKSSKGGYDGRGVVVIKGKEDLNKVLKTES--------FVEELVDIKKELAVMVARNK 215

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
             DV    V +  F     + +++    V PA+I   I ++ + +A    + +   G+  
Sbjct: 216 RGDVKSYPVVEMVF----EQSANILDFLVAPARIDEKIAQKAKEIAIKVVEVLDGVGVFG 271

Query: 246 SDFLFDPLSRKVFWLEINVQP 266
            +        ++   E+  +P
Sbjct: 272 VELFLTK-DDEILINEVAPRP 291


>gi|239943854|ref|ZP_04695791.1| hypothetical protein SrosN15_22846 [Streptomyces roseosporus NRRL
           15998]
 gi|291447318|ref|ZP_06586708.1| predicted protein [Streptomyces roseosporus NRRL 15998]
 gi|291350265|gb|EFE77169.1| predicted protein [Streptomyces roseosporus NRRL 15998]
          Length = 431

 Score = 70.2 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 40/216 (18%), Positives = 74/216 (34%), Gaps = 22/216 (10%)

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD---- 119
            D +V+  L    IP   +G+  S L  DK  +K++++  G+   P +LV+   +     
Sbjct: 93  RDAVVKEKLARYGIPMVSNGLEPSRLLADKWETKKILADHGLDTPPGMLVDGTLLKNGAA 152

Query: 120 -----------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168
                          I  P + K + G S  GI  I+    +   L      + G+ +L 
Sbjct: 153 EVPVYADIIRLKAEEIGYPLLTKAVWGSSGNGIRFIRDRAELEEYLATP---DEGNHVL- 208

Query: 169 EQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           E+ + G   T  ++G A  +     +  +        ++        P       ++ V 
Sbjct: 209 ERCITGELCTVEIVG-ADGEYAVQPLCFTGPTGGRPTFAFWELRSSAPRPADDAAFEPVA 267

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
                    +G  G+   D +          LEIN 
Sbjct: 268 EKLKKLCTTLGITGVINLDII--HSGGTYHILEINP 301


>gi|159038262|ref|YP_001537515.1| carbamoyl-phosphate synthase L chain ATP-binding [Salinispora
           arenicola CNS-205]
 gi|157917097|gb|ABV98524.1| Carbamoyl-phosphate synthase L chain ATP-binding [Salinispora
           arenicola CNS-205]
          Length = 458

 Score = 70.2 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 74/221 (33%), Gaps = 21/221 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   ED     I     + +        A   DK  ++ ++S  G+P+ P    
Sbjct: 77  AVHPGYGFLSEDADFAEICADNGLVFVGPPPQVMAALADKSSARALMSRAGLPLPPGSVA 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS-----SWNHGD 164
            +            +  P ++K   GG   G+ V+     +P    ++      ++   D
Sbjct: 137 PVPTAADAARVAAEVGYPVIVKAAAGGGGRGMTVVSTPTELPRAYARTRAAAQIAFG-DD 195

Query: 165 QLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
           ++ +E+Y+     +   V+ DA  +               ++          PA  +   
Sbjct: 196 RVYVERYLGSARHVEVQVLCDAHGNGV-----HLGTRDCSVQRRHQKLVEEAPAPALSAA 250

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
               +   A      +G  G    +FL D    +  +LEIN
Sbjct: 251 TLDAIASGALRGALDVGFTGAGTVEFLVDSAE-QFHFLEIN 290


>gi|119472676|ref|ZP_01614646.1| hypothetical protein ATW7_07304 [Alteromonadales bacterium TW-7]
 gi|119444801|gb|EAW26103.1| hypothetical protein ATW7_07304 [Alteromonadales bacterium TW-7]
          Length = 464

 Score = 70.2 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 31/185 (16%), Positives = 70/185 (37%), Gaps = 15/185 (8%)

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSLGIIVI 144
              +K+      +   VP   +++V      +    +   + P V+K  +G  S G+  +
Sbjct: 255 RCCNKVYLHDAFNYQKVPSLKTVVVADQAAQTLEQLEEAFTYPLVLKMPEGSFSKGVFKV 314

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKS--DFYS 201
                +   L  +  + +   +L ++Y+    +   GV+   ++      + ++    Y+
Sbjct: 315 ANRSELEAKL--TELFEYSALVLAQEYMYTEYDWRVGVLNGRAIYACRYLMARNHWQIYN 372

Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
           ++ K         LP     ++ K V   A  A + +G +G+   D        K + LE
Sbjct: 373 HDAKRFFSGGFETLP---TFELPKAVLDAALKACKTVG-KGLYGVD--VKEHQGKAYVLE 426

Query: 262 INVQP 266
           +N  P
Sbjct: 427 VNDNP 431


>gi|50903900|gb|AAT87615.1| Biotin carboxylase [Streptococcus pyogenes MGAS10394]
 gi|94542626|gb|ABF32675.1| biotin carboxylase [Streptococcus pyogenes MGAS9429]
 gi|94546518|gb|ABF36565.1| Biotin carboxylase [Streptococcus pyogenes MGAS2096]
          Length = 470

 Score = 70.2 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 80/220 (36%), Gaps = 16/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  FG   E+     + E + I +            DK+ ++  +   GVPV P    
Sbjct: 93  AIHPGFGFLSENSKFATMCEEMNIKFIGPSASVMDKMGDKINARSEMIKAGVPVIPGSDG 152

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG----DQ 165
            +   +  +   + I  P ++K   GG   GI  ++ +  +      +S    G      
Sbjct: 153 EVYNAQEALAIANKIGYPVMLKASAGGGGKGIRKVETEADLEAAFNAASQEALGAFGNGA 212

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+ +     +   ++GDA  ++  +         +  K             I   + 
Sbjct: 213 MYLEKVIYPARHIEVQILGDAYGNIIHLGERDCSLQRHNQKVL----EESPSIAIGNTLR 268

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            E+ + A  A +A+        +FL D  S K +++E+N 
Sbjct: 269 HEMGQAAVRAAKAVAYENAGTIEFLLDEDSEKFYFMEMNT 308


>gi|28871976|ref|NP_794595.1| acetyl-CoA carboxylase, biotin carboxylase [Pseudomonas syringae
           pv. tomato str. DC3000]
 gi|213968006|ref|ZP_03396152.1| acetyl-CoA carboxylase, biotin carboxylase [Pseudomonas syringae
           pv. tomato T1]
 gi|301383678|ref|ZP_07232096.1| acetyl-CoA carboxylase biotin carboxylase subunit [Pseudomonas
           syringae pv. tomato Max13]
 gi|302059953|ref|ZP_07251494.1| acetyl-CoA carboxylase biotin carboxylase subunit [Pseudomonas
           syringae pv. tomato K40]
 gi|302131619|ref|ZP_07257609.1| acetyl-CoA carboxylase biotin carboxylase subunit [Pseudomonas
           syringae pv. tomato NCPPB 1108]
 gi|28855229|gb|AAO58290.1| acetyl-CoA carboxylase, biotin carboxylase [Pseudomonas syringae
           pv. tomato str. DC3000]
 gi|213927349|gb|EEB60898.1| acetyl-CoA carboxylase, biotin carboxylase [Pseudomonas syringae
           pv. tomato T1]
          Length = 447

 Score = 70.2 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 76/222 (34%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         L  DK+ +K  +    VP  P    
Sbjct: 77  AIHPGYGFLAENADFAEQVEKSGFAFIGPKADTIRLMGDKVSAKDAMKLANVPTVPGSDG 136

Query: 112 LVNRFTMDSQHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPL----DLLQSSSWNHGD 164
            +      +  +   +  P +IK   GG   G+ V+ +++ +         ++++W    
Sbjct: 137 PLPEDEAIALRIGREVGYPVIIKAAGGGGGRGMRVVHREEDLIEAAAQTRAEAAAWFSNP 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+Y+     +   V+ D                   L+          PA  I   
Sbjct: 197 MVYLEKYLTNPRHVEVQVISDGQGQAI-----HLGDRDCSLQRRHQKVLEEAPAPFIDEQ 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              +V      A   IG RG    +FL+   + + +++E+N 
Sbjct: 252 ARADVLAACVKACIDIGYRGAGTFEFLY--ENGRFYFIEMNT 291


>gi|33151744|ref|NP_873097.1| phosphoribosylglycinamide formyltransferase 2 [Haemophilus ducreyi
           35000HP]
 gi|81836065|sp|Q7VNI4|PURT_HAEDU RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|33147965|gb|AAP95486.1| phosphoribosylglycinamide formyltransferase 2 [Haemophilus ducreyi
           35000HP]
          Length = 393

 Score = 70.2 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 48/286 (16%), Positives = 98/286 (34%), Gaps = 43/286 (15%)

Query: 19  GKACASALEDAGFKVSQID--------------------VDRSVGLVLAHLKPDLAFNVL 58
           GK     L+  G +V  +D                     D ++  V+   KPD     +
Sbjct: 24  GKEVVIELQRLGVEVIAVDRYANAPAQQVAHRAYTISMLDDDALRAVVEQEKPDFIVPEV 83

Query: 59  HGNFGEDGLVQAILELLEIPY-THSGILASALSMDKM-RSKQVVSSCGVPVCPSILVNRF 116
                E      ++EL +  Y       A+ L+M++    +      G+P  P   V+ F
Sbjct: 84  EAIATET-----LVELEQKGYQVVPTAKATQLTMNREGIRRLAAEELGLPTSPYRFVDNF 138

Query: 117 TMDSQHLI--SPPYVIKPLKGGSSLGIIVIKKDQSIPLD--LLQSSSWNHGDQLLIEQYV 172
               Q ++    P V+KP+   S  G  +IK    I       Q+     G ++++E ++
Sbjct: 139 ADFQQAVLAVGVPCVVKPIMSSSGHGQSIIKSLDQIQQAWDYSQAGGRAGGGRVIVEGFI 198

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLA 231
              +    ++    ++ T    P         +  + +      P  +     ++ Q++A
Sbjct: 199 K-FDYEITLLTVRHINGTSFLAPIG------HRQQNGDYRESWQPQAMSEVALQKAQQIA 251

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
                A+G RGI   +         + + E++ +P      +    
Sbjct: 252 ERITTALGGRGIFGVELFV--CGDDIIFNEVSPRP--HDTGMVTMA 293


>gi|29377343|ref|NP_816497.1| acetyl-CoA carboxylase biotin carboxylase subunit [Enterococcus
           faecalis V583]
 gi|227554300|ref|ZP_03984347.1| acetyl-CoA carboxylase biotin carboxylase subunit [Enterococcus
           faecalis HH22]
 gi|229544800|ref|ZP_04433525.1| acetyl-CoA carboxylase biotin carboxylase subunit [Enterococcus
           faecalis TX1322]
 gi|256854165|ref|ZP_05559530.1| acetyl-CoA carboxylase biotin carboxylase subunit [Enterococcus
           faecalis T8]
 gi|29344810|gb|AAO82567.1| acetyl-CoA carboxylase, biotin carboxylase [Enterococcus faecalis
           V583]
 gi|227176590|gb|EEI57562.1| acetyl-CoA carboxylase biotin carboxylase subunit [Enterococcus
           faecalis HH22]
 gi|229310072|gb|EEN76059.1| acetyl-CoA carboxylase biotin carboxylase subunit [Enterococcus
           faecalis TX1322]
 gi|256711108|gb|EEU26151.1| acetyl-CoA carboxylase biotin carboxylase subunit [Enterococcus
           faecalis T8]
 gi|315030781|gb|EFT42713.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Enterococcus
           faecalis TX4000]
 gi|315575228|gb|EFU87419.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Enterococcus
           faecalis TX0309B]
 gi|315582412|gb|EFU94603.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Enterococcus
           faecalis TX0309A]
          Length = 456

 Score = 70.2 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 75/220 (34%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  FG   E+    ++ E   I +            +K+ ++Q++    VPV P    
Sbjct: 77  AIHPGFGFLSENSQFASMCEECNITFIGPKAETIDAMGNKINARQLMQKAKVPVIPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL----DLLQSSSWNHGDQ 165
            I      +     I  P ++K   GG   GI  +   + +P        ++ +    D 
Sbjct: 137 VIDSVEEALTIAEEIGYPVMLKAAAGGGGKGIRKVLSKEELPKHFTSAQQEAKAAFGNDD 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+ +     +   ++GD    V  +            K             I  +  
Sbjct: 197 MYLEKIIYPARHIEVQILGDQYGHVIHLGERDCSLQRNNQKVL----EESPSIAISEEKR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +   A  A QA+        +FL DP     +++E+N 
Sbjct: 253 QMLGETAVRAAQAVHYENAGTIEFLMDPA-GDFYFMEMNT 291


>gi|158315833|ref|YP_001508341.1| carbamoyl-phosphate synthase L chain ATP-binding [Frankia sp.
           EAN1pec]
 gi|158111238|gb|ABW13435.1| Carbamoyl-phosphate synthase L chain ATP-binding [Frankia sp.
           EAN1pec]
          Length = 700

 Score = 70.2 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 35/216 (16%), Positives = 81/216 (37%), Gaps = 14/216 (6%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL----VN 114
           +G   E+ +         + +         L  +K+ +K+ V++ GVPV P  +     +
Sbjct: 82  YGFLAENPVFAQACADAGVVFVGPSARVVELMGNKIAAKRTVAAAGVPVVPGRVEPGMSD 141

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGDQLLIEQ 170
              + +   I  P ++KP  GG   G+ ++++  ++   L     ++++    D L +E+
Sbjct: 142 ADLVAASTEIGYPVLVKPAAGGGGKGMRLVREPAALAEALRSARREAAASFGDDTLFVER 201

Query: 171 YVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           +VD    +   ++ D   +V  +   +        K             +       +  
Sbjct: 202 FVDTPRHIEVQILADTHGNVIHLGERECSLQRRHQKI----VEEAPSVLLDAATRARIGG 257

Query: 230 LAFLAHQAIGCRGISRSDFLF-DPLSRKVFWLEINV 264
            A     A+G  G    +F+       + F++E+N 
Sbjct: 258 AAVDVAAAVGYVGAGTVEFVVGTDRPDEFFFMEMNT 293


>gi|330820637|ref|YP_004349499.1| Acetyl/propionyl-CoA carboxylase, alpha subunit [Burkholderia
           gladioli BSR3]
 gi|327372632|gb|AEA63987.1| Acetyl/propionyl-CoA carboxylase, alpha subunit [Burkholderia
           gladioli BSR3]
          Length = 681

 Score = 70.2 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 81/221 (36%), Gaps = 20/221 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+           I +    + A A    K  +K ++   GVP+ P    
Sbjct: 77  AIHPGYGFLSENEDFAEACAAAGIVFIGPPVAAIAAMGSKAAAKALMHEAGVPLVPGYHG 136

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
           +             I  P ++K   GG   G+ V+++    P  L     +++S    D+
Sbjct: 137 DDQDPALLHREADAIGYPVLLKASAGGGGKGMRVVERSADFPAALASCQREAASSFGNDR 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           +LIE+Y+     +   V GD   ++  +           ++          PA  +    
Sbjct: 197 VLIEKYLQRPRHVEVQVFGDTLGNIVYL-----FDRDCSVQRRHQKVLEEAPAPGLSDAQ 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +   A  A +A+G  G    +F+      + +++E+N 
Sbjct: 252 RRAMGDAAVAAARAVGYVGAGTVEFIVT--GEQFYFMEMNT 290


>gi|301058692|ref|ZP_07199693.1| carbamoyl-phosphate synthase, large subunit [delta proteobacterium
           NaphS2]
 gi|300447256|gb|EFK11020.1| carbamoyl-phosphate synthase, large subunit [delta proteobacterium
           NaphS2]
          Length = 1078

 Score = 70.2 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 47/278 (16%), Positives = 97/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + GF++  I         D               +V  ++   +P     
Sbjct: 29  SGTQACKALMEEGFEIVLINSNPATIMTDPGTAHRTYIEPITAEAVSRIIERERPQAILP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G  G +  V+     ILE L +    + +     + D+ + +  +   G+ V  + +
Sbjct: 89  TLGGQTGLNTAVEVAESGILEKLGVEMLGASLPVIQKAEDREQFRNAMKKIGLKVPDNFI 148

Query: 113 VNRFTMD--SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                    +   I  P +I+       +G  V      +          +   ++++E+
Sbjct: 149 ARNMDEARYAAEQIGYPIIIRASYTLGGIGSGVAYNRDEMEEIAKAGLDASMISEVIMER 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            + G  E    VM D   +V  I   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SLLGWKEYELEVMRDFKDNVVIICSIEN----FDPMGVHTGDSITVAPAQTLSDYEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F   P + ++  +E+N 
Sbjct: 265 RDASLAIIREIGVETGGSNIQFAVHPDTGEMVVIEMNP 302



 Score = 58.6 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 32/222 (14%), Positives = 81/222 (36%), Gaps = 14/222 (6%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-SILVN-RFTMDSQHLISPPYVIKPL 133
            +    +   +   + D+ R + ++   G+      I VN R  +     I  P V++P 
Sbjct: 663 GVKILGTSPDSIDQAEDRERFQVMLKKLGILQPENGIAVNQRQAIHIADRIGYPVVVRPS 722

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEI 192
                  + ++   + +   +  +   + G  +LI++++DG +E+    + D    V   
Sbjct: 723 FVLGGRAMEIVYDQKDLEYYMETAVQVSPGKPVLIDRFLDGAVEIDVDAISDGQTTVIGG 782

Query: 193 AVPKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
            +   +    E    S +S  V  P  +  DI + +        + +   G+    +   
Sbjct: 783 IMEHIE----EAGIHSGDSACVLPPVSLEPDILETIMEHTRALARELSVVGLMNIQYAVK 838

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
                ++ +E+N +   T     P ++   G    ++   ++
Sbjct: 839 A--GIIYVIEVNPRASRT----VPFVSKATGVPLAKMATQVI 874


>gi|296110381|ref|YP_003620762.1| carbamoyl-phosphate synthase large subunit [Leuconostoc kimchii
           IMSNU 11154]
 gi|295831912|gb|ADG39793.1| carbamoyl-phosphate synthase large subunit [Leuconostoc kimchii
           IMSNU 11154]
          Length = 1059

 Score = 70.2 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 48/286 (16%), Positives = 99/286 (34%), Gaps = 33/286 (11%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQIDVDRS---------------------VGLV 45
           G ++E + S   G   A +L++ G+ V  ++ + +                     +  +
Sbjct: 21  GQAAEFDYS---GTQAALSLKEEGYYVILVNSNPATIMTDAEIADKVYIEPLSIDFIERI 77

Query: 46  LAHLKPDLAFNVLHGNFG----EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           L   +PD     L G  G    +D     IL+ L I    + + A   + D+   K ++ 
Sbjct: 78  LRKERPDAILPTLGGQTGLNMAKDLSEAGILDDLSIELLGTKLSAIEEAEDREEFKALME 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
               P+  S +       +D       P +++P       G  +      +         
Sbjct: 138 RLHEPIPESTIATTLEEALDFADTHGYPVIVRPAYTLGGTGGGIANNHAELSDIAANGLD 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   Q+LIE+ + G  E+   VM DA  +   + V   + +     ++  +        
Sbjct: 198 LSPVTQVLIERSIAGYKEIEFEVMRDAHDNA--LVVASMENFDPVGIHTGDSIVTAPVQT 255

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +     + ++  A    +A+   G        DP S K + +E+N 
Sbjct: 256 LSDREVQMMRDAALKIIRALKIEGGVNIQMALDPHSYKYYIIEVNP 301



 Score = 68.6 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 29/192 (15%), Positives = 69/192 (35%), Gaps = 9/192 (4%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPL 133
            +P   + +     + D+    QV+    +P             + +  LI  P +I+P 
Sbjct: 650 GVPILGTTVADLNRAEDREAFDQVIKQLQLPQPVGKTATTVADALSAAQLIGYPVLIRPS 709

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
                  + ++  D+ +   + ++   ++   +LI+ Y+ G E    V+ D    V    
Sbjct: 710 YVLGGRAMEIVSSDEELQDYMQRAVKVSNDHPVLIDSYLVGQEAEVDVLSDGETAVIPGI 769

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
           +   +           +S  V P + +   +  E+ + A    +A+   G+    F+   
Sbjct: 770 MEHIERAGVHS----GDSMSVYPPQYLSQKVQDEMSQAAINLAKAMHTIGLMNVQFVIHE 825

Query: 253 LSRKVFWLEINV 264
                + +E+N 
Sbjct: 826 --NTAYVIEVNP 835


>gi|257087779|ref|ZP_05582140.1| acetyl-CoA carboxylase [Enterococcus faecalis D6]
 gi|257421572|ref|ZP_05598562.1| acetyl-CoA carboxylase biotin carboxylase subunit [Enterococcus
           faecalis X98]
 gi|256995809|gb|EEU83111.1| acetyl-CoA carboxylase [Enterococcus faecalis D6]
 gi|257163396|gb|EEU93356.1| acetyl-CoA carboxylase biotin carboxylase subunit [Enterococcus
           faecalis X98]
 gi|315026554|gb|EFT38486.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Enterococcus
           faecalis TX2137]
 gi|315156467|gb|EFU00484.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Enterococcus
           faecalis TX0043]
          Length = 456

 Score = 70.2 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 75/220 (34%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  FG   E+    ++ E   I +            +K+ ++Q++    VPV P    
Sbjct: 77  AIHPGFGFLSENSQFASMCEECNITFIGPKAETIDAMGNKINARQLMQKAKVPVIPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL----DLLQSSSWNHGDQ 165
            I      +     I  P ++K   GG   GI  +   + +P        ++ +    D 
Sbjct: 137 VIDSVEEALTIAEEIGYPVMLKAAAGGGGKGIRKVLSKEELPKHFTSAQQEAKAAFGNDD 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+ +     +   ++GD    V  +            K             I  +  
Sbjct: 197 MYLEKIIYPARHIEVQILGDQYGHVIHLGERDCSLQRNNQKVL----EESPSIAISEEKR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +   A  A QA+        +FL DP     +++E+N 
Sbjct: 253 QMLGETAVRAAQAVHYENAGTIEFLMDPA-GDFYFMEMNT 291


>gi|256763439|ref|ZP_05504019.1| acetyl-CoA carboxylase [Enterococcus faecalis T3]
 gi|256684690|gb|EEU24385.1| acetyl-CoA carboxylase [Enterococcus faecalis T3]
          Length = 456

 Score = 70.2 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 75/220 (34%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  FG   E+    ++ E   I +            +K+ ++Q++    VPV P    
Sbjct: 77  AIHPGFGFLSENSQFASMCEECNITFIGPKAETIDAMGNKINARQLMQKAKVPVIPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL----DLLQSSSWNHGDQ 165
            I      +     I  P ++K   GG   GI  +   + +P        ++ +    D 
Sbjct: 137 VIDSVEEALTIAEEIGYPVMLKAAAGGGGKGIRKVLSKEELPKHFTSAQQEAKAAFGNDD 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+ +     +   ++GD    V  +            K             I  +  
Sbjct: 197 MYLEKIIYPARHIEVQILGDQYGHVIHLGERDCSLQRNNQKVL----EESPSIAISEEKR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +   A  A QA+        +FL DP     +++E+N 
Sbjct: 253 QMLGETAVRAAQAVHYENAGTIEFLMDPA-GDFYFMEMNT 291


>gi|255974782|ref|ZP_05425368.1| acetyl-CoA carboxylase [Enterococcus faecalis T2]
 gi|256960936|ref|ZP_05565107.1| acetyl-CoA carboxylase [Enterococcus faecalis Merz96]
 gi|257420201|ref|ZP_05597195.1| acetyl-CoA carboxylase, biotin carboxylase [Enterococcus faecalis
           T11]
 gi|293382475|ref|ZP_06628410.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Enterococcus
           faecalis R712]
 gi|293387141|ref|ZP_06631702.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Enterococcus
           faecalis S613]
 gi|307280572|ref|ZP_07561620.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Enterococcus
           faecalis TX0860]
 gi|312906530|ref|ZP_07765532.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Enterococcus
           faecalis DAPTO 512]
 gi|312910475|ref|ZP_07769321.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Enterococcus
           faecalis DAPTO 516]
 gi|255967654|gb|EET98276.1| acetyl-CoA carboxylase [Enterococcus faecalis T2]
 gi|256951432|gb|EEU68064.1| acetyl-CoA carboxylase [Enterococcus faecalis Merz96]
 gi|257162029|gb|EEU91989.1| acetyl-CoA carboxylase, biotin carboxylase [Enterococcus faecalis
           T11]
 gi|291080159|gb|EFE17523.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Enterococcus
           faecalis R712]
 gi|291083412|gb|EFE20375.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Enterococcus
           faecalis S613]
 gi|306503938|gb|EFM73155.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Enterococcus
           faecalis TX0860]
 gi|310627473|gb|EFQ10756.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Enterococcus
           faecalis DAPTO 512]
 gi|311289247|gb|EFQ67803.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Enterococcus
           faecalis DAPTO 516]
 gi|315151736|gb|EFT95752.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Enterococcus
           faecalis TX0012]
          Length = 456

 Score = 70.2 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 75/220 (34%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  FG   E+    ++ E   I +            +K+ ++Q++    VPV P    
Sbjct: 77  AIHPGFGFLSENSQFASMCEECNITFIGPKAETIDAMGNKINARQLMQKAKVPVIPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL----DLLQSSSWNHGDQ 165
            I      +     I  P ++K   GG   GI  +   + +P        ++ +    D 
Sbjct: 137 VIDSVEEALTIAEEIGYPVMLKAAAGGGGKGIRKVLSKEELPKHFTSAQQEAKAAFGNDD 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+ +     +   ++GD    V  +            K             I  +  
Sbjct: 197 MYLEKIIYPARHIEVQILGDQYGHVIHLGERDCSLQRNNQKVL----EESPSIAISEEKR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +   A  A QA+        +FL DP     +++E+N 
Sbjct: 253 QMLGETAVRAAQAVHYENAGTIEFLMDPA-GDFYFMEMNT 291


>gi|239990310|ref|ZP_04710974.1| hypothetical protein SrosN1_23588 [Streptomyces roseosporus NRRL
           11379]
          Length = 431

 Score = 70.2 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 40/216 (18%), Positives = 74/216 (34%), Gaps = 22/216 (10%)

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD---- 119
            D +V+  L    IP   +G+  S L  DK  +K++++  G+   P +LV+   +     
Sbjct: 93  RDAVVKEKLARYGIPMVSNGLEPSRLLADKWETKKILADHGLDTPPGMLVDGTLLKNGAA 152

Query: 120 -----------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168
                          I  P + K + G S  GI  I+    +   L      + G+ +L 
Sbjct: 153 EVPVYADIIRLKAEEIGYPLLTKAVWGSSGNGIRFIRDRAELEEYLATP---DEGNHVL- 208

Query: 169 EQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           E+ + G   T  ++G A  +     +  +        ++        P       ++ V 
Sbjct: 209 ERCITGELCTVEIVG-ADGEYAVQPLCFTGPTGGRPTFAFWELRSSAPRPADDAAFEPVA 267

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
                    +G  G+   D +          LEIN 
Sbjct: 268 EKLKKLCTTLGITGVINLDII--HSGGTYHILEINP 301


>gi|229549015|ref|ZP_04437740.1| acetyl-CoA carboxylase biotin carboxylase subunit [Enterococcus
           faecalis ATCC 29200]
 gi|255971784|ref|ZP_05422370.1| acetyl-CoA carboxylase [Enterococcus faecalis T1]
 gi|256958098|ref|ZP_05562269.1| acetyl-CoA carboxylase [Enterococcus faecalis DS5]
 gi|257079986|ref|ZP_05574347.1| acetyl-CoA carboxylase [Enterococcus faecalis JH1]
 gi|257091101|ref|ZP_05585462.1| acetyl-CoA carboxylase biotin carboxylase [Enterococcus faecalis
           CH188]
 gi|294779510|ref|ZP_06744905.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Enterococcus
           faecalis PC1.1]
 gi|300861157|ref|ZP_07107244.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Enterococcus
           faecalis TUSoD Ef11]
 gi|307268314|ref|ZP_07549695.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Enterococcus
           faecalis TX4248]
 gi|307276176|ref|ZP_07557307.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Enterococcus
           faecalis TX2134]
 gi|312904371|ref|ZP_07763532.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Enterococcus
           faecalis TX0635]
 gi|312951130|ref|ZP_07770035.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Enterococcus
           faecalis TX0102]
 gi|229305808|gb|EEN71804.1| acetyl-CoA carboxylase biotin carboxylase subunit [Enterococcus
           faecalis ATCC 29200]
 gi|255962802|gb|EET95278.1| acetyl-CoA carboxylase [Enterococcus faecalis T1]
 gi|256948594|gb|EEU65226.1| acetyl-CoA carboxylase [Enterococcus faecalis DS5]
 gi|256988016|gb|EEU75318.1| acetyl-CoA carboxylase [Enterococcus faecalis JH1]
 gi|256999913|gb|EEU86433.1| acetyl-CoA carboxylase biotin carboxylase [Enterococcus faecalis
           CH188]
 gi|294453389|gb|EFG21796.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Enterococcus
           faecalis PC1.1]
 gi|295113747|emb|CBL32384.1| biotin carboxylase /acetyl-CoA carboxylase carboxyltransferase
           subunit alpha [Enterococcus sp. 7L76]
 gi|300850196|gb|EFK77946.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Enterococcus
           faecalis TUSoD Ef11]
 gi|306507170|gb|EFM76309.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Enterococcus
           faecalis TX2134]
 gi|306515340|gb|EFM83874.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Enterococcus
           faecalis TX4248]
 gi|310630906|gb|EFQ14189.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Enterococcus
           faecalis TX0102]
 gi|310632270|gb|EFQ15553.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Enterococcus
           faecalis TX0635]
 gi|315036283|gb|EFT48215.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Enterococcus
           faecalis TX0027]
 gi|315148840|gb|EFT92856.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Enterococcus
           faecalis TX4244]
 gi|315154130|gb|EFT98146.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Enterococcus
           faecalis TX0031]
 gi|315159007|gb|EFU03024.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Enterococcus
           faecalis TX0312]
 gi|315162822|gb|EFU06839.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Enterococcus
           faecalis TX0645]
 gi|315576868|gb|EFU89059.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Enterococcus
           faecalis TX0630]
 gi|323481742|gb|ADX81181.1| acetyl-CoA carboxylase, biotin carboxylase [Enterococcus faecalis
           62]
 gi|327536033|gb|AEA94867.1| acetyl-CoA carboxylase subunit A [Enterococcus faecalis OG1RF]
 gi|329577185|gb|EGG58655.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Enterococcus
           faecalis TX1467]
          Length = 456

 Score = 70.2 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 75/220 (34%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  FG   E+    ++ E   I +            +K+ ++Q++    VPV P    
Sbjct: 77  AIHPGFGFLSENSQFASMCEECNITFIGPKAETIDAMGNKINARQLMQKAKVPVIPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL----DLLQSSSWNHGDQ 165
            I      +     I  P ++K   GG   GI  +   + +P        ++ +    D 
Sbjct: 137 VIDSVEEALTIAEEIGYPVMLKAAAGGGGKGIRKVLSKEELPKHFTSAQQEAKAAFGNDD 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+ +     +   ++GD    V  +            K             I  +  
Sbjct: 197 MYLEKIIYPARHIEVQILGDQYGHVIHLGERDCSLQRNNQKVL----EESPSIAISEEKR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +   A  A QA+        +FL DP     +++E+N 
Sbjct: 253 QMLGETAVRAAQAVHYENAGTIEFLMDPA-GDFYFMEMNT 291


>gi|205355794|ref|ZP_03222563.1| putative pyruvate carboxylase A subunit [Campylobacter jejuni
           subsp. jejuni CG8421]
 gi|205346228|gb|EDZ32862.1| putative pyruvate carboxylase A subunit [Campylobacter jejuni
           subsp. jejuni CG8421]
          Length = 465

 Score = 70.2 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 91/222 (40%), Gaps = 20/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H  +G   E+       E   I +            +K  ++++++  G+P+ P    
Sbjct: 78  AIHPGYGFLSENYEFAKACEDAGIIFIGPKSEVIHKMGNKNIARKLMAKNGIPIVPGTEK 137

Query: 113 VNRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGD 164
           +N ++M+        I  P ++K   GG   GI V+ K+Q +         ++ ++ + D
Sbjct: 138 LNSYSMEEIKIFAEKIGYPVILKASGGGGGRGIRVVHKEQDLENAFESCKREALTYFNND 197

Query: 165 QLLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
           ++ +E+Y V+   +   ++GD   ++  +            K        + P   I  +
Sbjct: 198 EVFMEKYVVNPRHIEFQILGDNYGNIIHLCERDCSIQRRHQK-----VIEIAPCPGISDN 252

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + K +   A  A +A+G       +FL D  +R  +++E+N 
Sbjct: 253 LRKTMGVTAVAAAKAVGYTNAGTIEFLLDDYNR-FYFMEMNT 293


>gi|163782877|ref|ZP_02177873.1| biotin carboxylase [Hydrogenivirga sp. 128-5-R1-1]
 gi|159881998|gb|EDP75506.1| biotin carboxylase [Hydrogenivirga sp. 128-5-R1-1]
          Length = 444

 Score = 70.2 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 33/220 (15%), Positives = 82/220 (37%), Gaps = 14/220 (6%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-- 109
           D  +   +G   E+     I+    + +         L  DK+++K++    G+P+ P  
Sbjct: 76  DAVYPG-YGFLAENPKFAEIVTKSGVKFVGPAPSTLELIGDKIKTKEIAGRVGIPLVPGS 134

Query: 110 -SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGD 164
                    ++    I  P V+K   GG   GI ++  ++ +    P+ + ++       
Sbjct: 135 SGATDLEKAIEIASEIGYPVVLKASAGGGGRGIRIVFNEKELREKFPVAVQEAEVSFGDG 194

Query: 165 QLLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           ++ +E++ ++   +   V+ D+  ++  +   +        K           A +    
Sbjct: 195 RVYVEKFIINPKHIEFQVLADSHGNIAVLGERECSIQRRHQK----LIEEAPSASVEDRK 250

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            K+++       + I   G    +FL D      +++E+N
Sbjct: 251 RKQIEEAVVEFCREINYEGAGTVEFLMDEEGN-FYFMEMN 289


>gi|163795173|ref|ZP_02189141.1| Biotin carboxylase [alpha proteobacterium BAL199]
 gi|159179571|gb|EDP64100.1| Biotin carboxylase [alpha proteobacterium BAL199]
          Length = 448

 Score = 70.2 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 73/221 (33%), Gaps = 20/221 (9%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+     I+E   I +            DK+ +K+ +   GVP  P    
Sbjct: 79  AIHPGVGFLSENAAFAEIVEAHGITFIGPSPAHIQAMGDKITAKRTMVELGVPCVPGSEG 138

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGD 164
            +            I  P ++K   GG   G+ V +  +++           ++++   D
Sbjct: 139 EVKTLETARAEAKRIGYPILVKAAAGGGGRGMKVAEGPENLEEAFHMARRESAAAFG-ND 197

Query: 165 QLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            + +E+Y+     +   +  D    V               K             +    
Sbjct: 198 AVYMERYLSRPRHIEIQIAADNHGSVVHFGERDCSIQRRHQK----VVEEAPSPALNAAE 253

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + + R A  A   +G R +   +FL+     + F++E+N 
Sbjct: 254 RERIGRRAVDAISRMGYRSLGTFEFLY--EDGEFFFIEMNT 292


>gi|94969224|ref|YP_591272.1| carbamoyl-phosphate synthase large subunit [Candidatus Koribacter
           versatilis Ellin345]
 gi|166991300|sp|Q1IPK2|CARB_ACIBL RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|94551274|gb|ABF41198.1| carbamoyl-phosphate synthase large subunit [Candidatus Koribacter
           versatilis Ellin345]
          Length = 1102

 Score = 70.2 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 33/225 (14%), Positives = 87/225 (38%), Gaps = 14/225 (6%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           L+   +P   +   +  L+ D+ R  +++    +P  P          + + + I  P +
Sbjct: 663 LKASGVPVIGTSPESIDLAEDRKRFNKLLEELDIPQPPGSTATSLEEAVANANKIGYPVL 722

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        +++  + + +   + Q+  ++    +LI+ ++ +  E+    + D    
Sbjct: 723 VRPSYVLGGRAMMICYEQEEVERYMRQAVEYSQERPVLIDHFLEEATEVDVDCLSDGEDC 782

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           V    +   +    E    S +S+ VLP   +   + K ++   F   +A+   G+    
Sbjct: 783 VIGGIMQHIE----EAGIHSGDSSCVLPSVDLSEQVLKTIREYTFKLARALKVIGLMNVQ 838

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +       KV+ +E+N +   T     P ++   G    ++   +
Sbjct: 839 YAIQRE--KVYVIEVNPRASRT----VPYVSKATGVPMAKIAARL 877



 Score = 60.9 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 54/297 (18%), Positives = 111/297 (37%), Gaps = 46/297 (15%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQ---------IDVDRSVGLVLAHLKPDLA--- 54
           G S+E + S   G     AL+  G++V            D + +    +  L P+     
Sbjct: 21  GQSAEFDYS---GAQACKALKAEGYEVVLANSNPATIMTDPEMADRTYIEPLTPEFLEEI 77

Query: 55  --------------FNVLHGNFGE-------DGLVQAILELLEIPYTHSGILASALSMDK 93
                         F +L    G+       D     +L+   +    + + A   + D+
Sbjct: 78  IRIEAAMMPAGAGKFALLPTVGGQTALNLAVDLADSGVLDKYSVILIGAQLGAIKKAEDR 137

Query: 94  MRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
           +  K  ++  G+ V  S L+N  +  ++    I  P V++P       G  +    + + 
Sbjct: 138 LLFKDAMAKIGLDVPRSALINNLKDGLEFSGKIGFPLVLRPSFTLGGSGGGIAYNREELM 197

Query: 152 LDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-L 209
             L +    +   ++L+E+ V G  E    +M D + +V  I   ++    ++       
Sbjct: 198 DLLGKGLDLSPVHEVLLEESVLGWKEYELELMRDLADNVIVICSIEN----FDPMGVHTG 253

Query: 210 NSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +S  V PA+ +    Y+ ++  A    + IG   G S   F  +P + ++  +E+N 
Sbjct: 254 DSITVAPAQTLSDREYQIMRDAAIKVIREIGVETGGSNIQFATNPENGRMIVIEMNP 310


>gi|23500933|ref|NP_697060.1| biotin carboxylase [Brucella suis 1330]
 gi|163842296|ref|YP_001626700.1| biotin carboxylase [Brucella suis ATCC 23445]
 gi|23346787|gb|AAN28975.1| biotin carboxylase [Brucella suis 1330]
 gi|163673019|gb|ABY37130.1| biotin carboxylase [Brucella suis ATCC 23445]
          Length = 673

 Score = 70.2 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 39/225 (17%), Positives = 73/225 (32%), Gaps = 22/225 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      +E   + +      A      K  +K ++   GVPV P    
Sbjct: 95  AIHPGYGFLSENPAFVDAVEEAGLIFIGPSAKAIRAMGLKDAAKALMEKAGVPVVPGYHG 154

Query: 114 NRFT----MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
           +             I+ P +IK   GG   G+  +         L     ++ +      
Sbjct: 155 DNQDGAFLKSEADRITYPVLIKARAGGGGKGMRRVDSAADFAAALESARREAEASFGDGA 214

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           +L+E+Y+     +   V GD   +               L+          PA  +  ++
Sbjct: 215 VLVEKYMAKPRHIEVQVFGDNHGNAV-----HLFERDCSLQRRHQKVIEEAPAPGMTEEM 269

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR----KVFWLEINV 264
              +   A  A   IG  G    +F+ D        + F++E+N 
Sbjct: 270 RAAMGEAAVKAALTIGYSGAGTVEFIADVSEGLRPDRFFFMEMNT 314


>gi|291619125|ref|YP_003521867.1| AccC [Pantoea ananatis LMG 20103]
 gi|291154155|gb|ADD78739.1| AccC [Pantoea ananatis LMG 20103]
 gi|327395455|dbj|BAK12877.1| biotin carboxylase AccC [Pantoea ananatis AJ13355]
          Length = 449

 Score = 70.2 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 39/222 (17%), Positives = 80/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---S 110
            +H  +G   E+      +E     +         L  DK+ +   +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAEQVERSGFIFVGPKADTIRLMGDKVSAITAMKKAGVPTVPGSDG 136

Query: 111 ILVNRFTMD--SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
            L +    +      I  P +IK   GG   G+ V++ D+ +   +     ++ +  + D
Sbjct: 137 SLTDDMEKNRAFAKRIGYPVIIKASGGGGGRGMRVVRSDKDLEQSINMTKAEAKAAFNND 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+Y++    +   V+ D   +   +            K          PA  I  +
Sbjct: 197 MVYMEKYLENPRHIEIQVLADGQGNAIYLGERDCSMQRRHQK-----VVEEAPAPGITPE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +   +      A   IG RG    +FL+   + + +++E+N 
Sbjct: 252 LRSFIGERCTRACIDIGYRGAGTFEFLY--ENGEFYFIEMNT 291


>gi|298527784|ref|ZP_07015188.1| Carbamoyl-phosphate synthase L chain ATP-binding
           [Desulfonatronospira thiodismutans ASO3-1]
 gi|298511436|gb|EFI35338.1| Carbamoyl-phosphate synthase L chain ATP-binding
           [Desulfonatronospira thiodismutans ASO3-1]
          Length = 1227

 Score = 70.2 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 33/223 (14%), Positives = 78/223 (34%), Gaps = 20/223 (8%)

Query: 56  NVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
             +H  +G   ED    +      + +         +  +K+  + +     VPV P   
Sbjct: 88  IAIHPGWGFISEDFSFPSQCRKSGLVFIGPEDRPMEILGNKVAVRDLAKRVDVPVVPGSE 147

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
             +     +D  + I  P ++K   GG   GI  + +++ +     ++S+         +
Sbjct: 148 GAVTVEQALDMAYEIGFPVMLKAEGGGGGRGIYEVFREEELERAYAKASALAQASFGNPR 207

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK---IPL 221
           L +E+ +     +   V  D   +V        D     L+ +      + P+    +  
Sbjct: 208 LYVEKLLTSVRHIEIQVAADRHGNVFAF-----DERDCTLQRNHQKLVEITPSPWPVMNE 262

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           D+  +++  +      +G   +   +FL D      + +E+N 
Sbjct: 263 DLRAKLKEYSRRLVSEVGYHSLCTVEFLVDREGN-PYLIEVNT 304


>gi|19746702|ref|NP_607838.1| acetyl-CoA carboxylase biotin carboxylase subunit [Streptococcus
           pyogenes MGAS8232]
 gi|139473234|ref|YP_001127949.1| acetyl-CoA carboxylase biotin carboxylase subunit [Streptococcus
           pyogenes str. Manfredo]
 gi|161761304|ref|YP_060798.2| acetyl-CoA carboxylase biotin carboxylase subunit [Streptococcus
           pyogenes MGAS10394]
 gi|162139077|ref|YP_597219.2| acetyl-CoA carboxylase biotin carboxylase subunit [Streptococcus
           pyogenes MGAS9429]
 gi|162139126|ref|YP_601109.2| acetyl-CoA carboxylase biotin carboxylase subunit [Streptococcus
           pyogenes MGAS2096]
 gi|19748926|gb|AAL98337.1| putative acetyl-CoA carboxylase biotin carboxylase subunit
           [Streptococcus pyogenes MGAS8232]
 gi|134271480|emb|CAM29701.1| biotin carboxylase subunit of acetyl-CoA carboxylase [Streptococcus
           pyogenes str. Manfredo]
          Length = 454

 Score = 70.2 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 80/220 (36%), Gaps = 16/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  FG   E+     + E + I +            DK+ ++  +   GVPV P    
Sbjct: 77  AIHPGFGFLSENSKFATMCEEMNIKFIGPSASVMDKMGDKINARSEMIKAGVPVIPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG----DQ 165
            +   +  +   + I  P ++K   GG   GI  ++ +  +      +S    G      
Sbjct: 137 EVYNAQEALAIANKIGYPVMLKASAGGGGKGIRKVETEADLEAAFNAASQEALGAFGNGA 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+ +     +   ++GDA  ++  +         +  K             I   + 
Sbjct: 197 MYLEKVIYPARHIEVQILGDAYGNIIHLGERDCSLQRHNQKVL----EESPSIAIGNTLR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            E+ + A  A +A+        +FL D  S K +++E+N 
Sbjct: 253 HEMGQAAVRAAKAVAYENAGTIEFLLDEDSEKFYFMEMNT 292


>gi|289643814|ref|ZP_06475921.1| pyruvate carboxylase [Frankia symbiont of Datisca glomerata]
 gi|289506367|gb|EFD27359.1| pyruvate carboxylase [Frankia symbiont of Datisca glomerata]
          Length = 1158

 Score = 70.2 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 41/250 (16%), Positives = 89/250 (35%), Gaps = 24/250 (9%)

Query: 28  DAGFKVS-QIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSG 83
             G  V   +D+D ++  V   +  D     LH  +G   E   +    EL  + +    
Sbjct: 80  KPGHPVRGYLDID-ALLAVAKRVGAD----ALHPGYGFLSESEALAHACELAGVTFVGPP 134

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPS---ILVNRFTMDSQHLISPPYVIKPLKGGSSLG 140
                L+ DK+ +++   + G+PV  +   +      + +   +  P  +K   GG   G
Sbjct: 135 PPVLRLTGDKVAAREAAVAAGLPVLRASAPVTEPAAALAAAEAVGFPLFVKASAGGGGRG 194

Query: 141 IIVIKKDQSIP----LDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVP 195
           +  +   + +       + ++++      + +EQ +D    +   V+GDA+ +V  +   
Sbjct: 195 LRRVNYPEDLEDAVTSAIREAAAAFGDGTIFLEQALDRPRHIEVQVLGDATGEVVHLYE- 253

Query: 196 KSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
                   ++        V PA  +   +   +   A    + +G       +FL     
Sbjct: 254 ----RDCSVQRRHQKVVEVAPAPLLDAAVRDRLCADALAFARHVGYVNAGTVEFLVAADG 309

Query: 255 RKVFWLEINV 264
              F  E+N 
Sbjct: 310 SHTFM-EMNP 318


>gi|88808802|ref|ZP_01124312.1| carbamoyl-phosphate synthase, large subunit [Synechococcus sp. WH
           7805]
 gi|88787790|gb|EAR18947.1| carbamoyl-phosphate synthase, large subunit [Synechococcus sp. WH
           7805]
          Length = 1107

 Score = 70.2 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 56/283 (19%), Positives = 96/283 (33%), Gaps = 44/283 (15%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL+  G++V  +         D +              V  V+   +PD    
Sbjct: 29  SGTQACKALKAEGYEVVLVNSNPASIMTDPEMADRTYVEPLTPEVVTRVIERERPDALLP 88

Query: 57  VLHGN--------FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
            + G           EDG     L+   I    + + A   + D+   K+ +   GV VC
Sbjct: 89  TMGGQTALNLAVALAEDGT----LDRFGIELIGADLKAIRKAEDRQLFKEAMERIGVKVC 144

Query: 109 PSILVNRFTMDS---QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
           PS + +           + + P +I+P       G  +    +            +   Q
Sbjct: 145 PSGIASSMDEAKDVGASIGTFPRIIRPAFTLGGSGGGIAYNPEEFDAICKSGLDASPVSQ 204

Query: 166 LLIEQYVDG-IELTCGVMGD-ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
           +LIE+ + G  E    VM D A   V   ++   D           +S  V PA+ +   
Sbjct: 205 ILIEKSLLGWKEFELEVMRDLADNVVIVCSIENLDPMGVHT----GDSITVAPAQTLTDR 260

Query: 223 IYKEVQRLAFLAHQAIG-CRGISRSDFLFDPLSRKVFWLEINV 264
            Y+ ++  +    + IG   G S   F  +P    V  +E+N 
Sbjct: 261 EYQRLRDQSIAIIREIGVATGGSNIQFAINPQDGDVVVIEMNP 303



 Score = 45.9 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 30/219 (13%), Positives = 71/219 (32%), Gaps = 14/219 (6%)

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF--TMDSQHLISPPYVIKPLKGGSS 138
            +   +  L+ D+ + + ++    +    + L             +  P V++P      
Sbjct: 687 GTSPESIDLAEDREQFEAILRELEIRQPRNGLARSDGEARAVAETVGYPVVVRPSYVLGG 746

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKS 197
             + V+  +  +   + ++        +LI+QY+ + IE+    + D    V    + + 
Sbjct: 747 RAMEVVYDESELNRYMNEAVQVEPDHPVLIDQYLQNAIEVDVDALCDQEGTVVIGGLME- 805

Query: 198 DFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256
             +       S +S   LP   +  +    ++         +  RG+    F        
Sbjct: 806 --HIEPAGIHSGDSACCLPSISLGAEALNTIKAWTKALALRLNVRGLINLQFAVQRAENG 863

Query: 257 ---VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
              VF +E N +   T     P +A   G     +   +
Sbjct: 864 EERVFIIEANPRASRT----VPFVAKATGVPLARIATRV 898


>gi|309792063|ref|ZP_07686537.1| lysine biosynthesis enzyme LysX [Oscillochloris trichoides DG6]
 gi|308225870|gb|EFO79624.1| lysine biosynthesis enzyme LysX [Oscillochloris trichoides DG6]
          Length = 280

 Score = 70.2 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 47/281 (16%), Positives = 94/281 (33%), Gaps = 51/281 (18%)

Query: 1   MAVLMGGISSEREVSLSSGKA--CASALEDAGFKVSQIDVDRSVGLVL--AHLKPDLAFN 56
           +AVL          S    +     + LE  G    +ID DR     L       D+   
Sbjct: 3   IAVLA---------SRVRAEEKLIFAELERRGLDYVKID-DREEIFDLHQREYPFDVVL- 51

Query: 57  VLHGNFGEDGLVQ--------AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
                   +  +Q         I     +P  ++    ++   DK  + Q +   GVP  
Sbjct: 52  --------ERCIQHSRALYMLKIFNDAGVPTVNT-YHVASTCGDKFLTTQALVHAGVPTP 102

Query: 109 PSILV--NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ- 165
            ++L       +++   +  P V+KP+ G     +  I    +    L       +    
Sbjct: 103 RNLLAFTPESALEAMEQLGYPVVLKPVVGSWGRMVSKINDRDAAEAILEHRDVLGNYQHS 162

Query: 166 -LLIEQYVD--GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD 222
              I++Y+   G ++   V+GD  +     A     + +   +    ++  + P      
Sbjct: 163 IFYIQEYIKKPGRDIRSFVVGDDCIGAIYRA--SEHWITNTARGGQASNCPITP------ 214

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
              E+  L+  A  A+G   ++  D L +    ++   E+N
Sbjct: 215 ---ELADLSVRAAHAVGGGVVA-VD-LLENEDGQLLVNEVN 250


>gi|259907380|ref|YP_002647736.1| carbamoyl phosphate synthase large subunit [Erwinia pyrifoliae
           Ep1/96]
 gi|224963002|emb|CAX54485.1| Carbamoyl-phosphate synthase large chain [Erwinia pyrifoliae
           Ep1/96]
 gi|283477213|emb|CAY73120.1| carbamoyl-phosphate synthase large chain [Erwinia pyrifoliae DSM
           12163]
          Length = 1084

 Score = 70.2 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 50/319 (15%), Positives = 110/319 (34%), Gaps = 52/319 (16%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D +              V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +    Q +L    +    +   A   + D+ R    + S G+    S +
Sbjct: 89  TMGGQTALNCALELERQGVLAEFGVTMIGATADAIDKAEDRRRFDVAMKSIGLDTARSGI 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     +     +  P +I+P       G  +    +       +    +  ++LLI++
Sbjct: 149 AHTMEEALAVAADVGFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTNELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + +   +   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIEN----FDAMGIHTGDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV-----------QPGMTPVSIFP 275
           +  +    + IG   G S   F  +P + ++  +E+N              G        
Sbjct: 265 RNASMAVLREIGVETGGSNVQFSVNPENGRLIIIEMNPRVSRSSALASKATGF----PIA 320

Query: 276 EMAA--YAGYSFRELLLWM 292
           ++AA    GY+  EL+  +
Sbjct: 321 KIAAKLAVGYTLDELMNDI 339



 Score = 65.5 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 85/221 (38%), Gaps = 14/221 (6%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYV 129
           LE   +P   +   A   + D+ R +Q V   G+    +  V    M  +   +I  P V
Sbjct: 654 LEAAGVPVIGTSPDAIDRAEDRERFQQAVERLGLKQPANATVTAIDMAVEKAAMIGYPLV 713

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  +  +      + S ++   +L+++++ D +E+    + D    
Sbjct: 714 VRPSYVLGGRAMEIVYDEIDLKRYFNTAVSVSNDAPVLLDRFLDDAVEVDVDAICDGEQV 773

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           +    +   +    +    S +S   LPA  +  +I   +++        +G RG+    
Sbjct: 774 LIGGIMEHIE----QAGVHSGDSACSLPAYTLSAEIQNVMRQQVEKLAFELGVRGLMNVQ 829

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           F       +V+ +E+N +   T     P ++   G    ++
Sbjct: 830 FAV--KDNEVYLIEVNPRAART----VPFVSKATGMPLAKV 864


>gi|62289008|ref|YP_220801.1| biotin carboxylase [Brucella abortus bv. 1 str. 9-941]
 gi|82698949|ref|YP_413523.1| carbamoyl-phosphate synthase subunit L [Brucella melitensis biovar
           Abortus 2308]
 gi|297247427|ref|ZP_06931145.1| 3-methylcrotonyl-CoA carboxylase alpha subunit [Brucella abortus
           bv. 5 str. B3196]
 gi|62195140|gb|AAX73440.1| biotin carboxylase [Brucella abortus bv. 1 str. 9-941]
 gi|82615050|emb|CAJ09974.1| Biotin/lipoyl attachment:Biotin-requiring enzyme, attachment
           site:Carbamoyl-phosphate synthase L chain,
           ATP-binding:Carbamoyl [Brucella melitensis biovar
           Abortus 2308]
 gi|297174596|gb|EFH33943.1| 3-methylcrotonyl-CoA carboxylase alpha subunit [Brucella abortus
           bv. 5 str. B3196]
          Length = 673

 Score = 70.2 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 39/225 (17%), Positives = 73/225 (32%), Gaps = 22/225 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      +E   + +      A      K  +K ++   GVPV P    
Sbjct: 95  AIHPGYGFLSENPAFVDAVEEAGLIFIGPSAKAIRAMGLKDAAKALMEKAGVPVVPGYHG 154

Query: 114 NRFT----MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
           +             I+ P +IK   GG   G+  +         L     ++ +      
Sbjct: 155 DNQDGAFLKSEADRITYPVLIKARAGGGGKGMRRVDSAADFAAALESARREAEASFGDGA 214

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           +L+E+Y+     +   V GD   +               L+          PA  +  ++
Sbjct: 215 VLVEKYMAKPRHIEVQVFGDNHGNAV-----HLFERDCSLQRRHQKVIEEAPAPGMTEEM 269

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR----KVFWLEINV 264
              +   A  A   IG  G    +F+ D        + F++E+N 
Sbjct: 270 RAAMGEAAVKAALTIGYSGAGTVEFIADVSEGLRPDRFFFMEMNT 314


>gi|302879461|ref|YP_003848025.1| carbamoyl-phosphate synthase, large subunit [Gallionella
           capsiferriformans ES-2]
 gi|302582250|gb|ADL56261.1| carbamoyl-phosphate synthase, large subunit [Gallionella
           capsiferriformans ES-2]
          Length = 1075

 Score = 70.2 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 49/278 (17%), Positives = 100/278 (35%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVDRSVGL------------VLAHLKPDLAFN 56
           SG     AL + G++V  +         D D +               ++A  +PD    
Sbjct: 29  SGAQACKALREEGYRVVLVNSNPATIMTDPDMADATYIEPITWQIVEKIIAKERPDAILP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      +LE   +    +   A  ++ D+ + KQ ++  G+    S +
Sbjct: 89  TMGGQTALNCALDLAHHGVLEKYNVEMIGASREAIDMAEDREKFKQAMTRIGLASARSAI 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     +  Q ++  P VI+P       G  +    +       +    +   +LLIE+
Sbjct: 149 AHSMEEALQVQQVMGFPTVIRPSFTMGGSGGGIAYNREEFLEICERGLEASPTSELLIEE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPA-KIPLDIYKEV 227
            + G  E    V+ D + +   I   ++ D           +S  V PA  +    Y+ +
Sbjct: 209 SLLGWKEYEMEVVRDRNDNCIIICSIENLDPMGVHT----GDSITVAPALTLTDKEYQIL 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P   ++  +E+N 
Sbjct: 265 RDASLAVLREIGVETGGSNVQFSINPDDGRMVVIEMNP 302



 Score = 55.9 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 34/207 (16%), Positives = 72/207 (34%), Gaps = 26/207 (12%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQHLISPPYV 129
           LE   +P   +       + D+ R KQ++ +  +   P+   +     +     I  P V
Sbjct: 648 LEKNGVPIIGTTPDMIDCAEDRERFKQMLMALELKQPPNRTASTVAEGLAGAAAIGYPLV 707

Query: 130 IKPLKGGSSLGIIVIKKDQSIPL----DLLQSSSWNHGDQLL--------IEQYVDGIEL 177
           ++P        + +I +   +        + S ++     +L        IE  VD +  
Sbjct: 708 MRPSNVLGGRAMEIIHEQVDLERYMRDAEIMSKTYPERLPILLDRFLNDAIEVDVDAVSD 767

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
              V+    ++  E A   S            ++  + P  +P+ +  E++R      +A
Sbjct: 768 GVDVIIGGIMEHIEEAGVHSG----------DSACSLPPFSLPVAMQNELRRQTVAMARA 817

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINV 264
           +   G+    F        V+ LE+N 
Sbjct: 818 LNVVGLMNVQFAI--QGETVYVLEVNP 842


>gi|148559969|ref|YP_001258064.1| biotin carboxylase [Brucella ovis ATCC 25840]
 gi|148371226|gb|ABQ61205.1| biotin carboxylase [Brucella ovis ATCC 25840]
          Length = 673

 Score = 70.2 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 39/225 (17%), Positives = 73/225 (32%), Gaps = 22/225 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      +E   + +      A      K  +K ++   GVPV P    
Sbjct: 95  AIHPGYGFLSENPAFVDAVEEAGLIFIGPSAKAIRAMGLKDAAKALMEKAGVPVVPGYHG 154

Query: 114 NRFT----MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
           +             I+ P +IK   GG   G+  +         L     ++ +      
Sbjct: 155 DNQDGAFLKSEADRITYPVLIKARAGGGGKGMRRVDSAADFAAALESARREAEASFGDGA 214

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           +L+E+Y+     +   V GD   +               L+          PA  +  ++
Sbjct: 215 VLVEKYMAKPRHIEVQVFGDNHGNAV-----HLFERDCSLQRRHQKVIEEAPAPGMTEEM 269

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR----KVFWLEINV 264
              +   A  A   IG  G    +F+ D        + F++E+N 
Sbjct: 270 RAAMGEAAVKAALTIGYSGAGTVEFIADVSEGLRPDRFFFMEMNT 314


>gi|116621513|ref|YP_823669.1| carbamoyl-phosphate synthase large subunit [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116224675|gb|ABJ83384.1| carbamoyl-phosphate synthase large subunit [Candidatus Solibacter
           usitatus Ellin6076]
          Length = 1070

 Score = 70.2 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 49/278 (17%), Positives = 106/278 (38%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQID------------VDRS---------VGLVLAHLKPDLAFN 56
           SG   A AL   GF+V  ++             D++         +  ++   +PD   +
Sbjct: 29  SGTQAAKALRADGFEVILVNSNPATIMTDPNLADKTYVEPLTRPYLEEIIRRERPDALLS 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G  G +  V+     +L+   +    + I A   + D++  K  +   G+    S L
Sbjct: 89  TVGGQTGLNLSVELAEAGVLDKYGVELIGAKIDAIKKAEDRLLFKDAMRKIGLATPQSQL 148

Query: 113 VNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           ++     ++    I  P +++P       G  +    + +   L +  + +   ++L+E+
Sbjct: 149 ISTVAAGLEFAEKIGYPNILRPSFTMGGTGGGIAYNKEELVEILERGIALSPVHEVLMEE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
              G  E    VM D + +   I   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SALGWKEYELEVMRDLADNCIIICSIEN----FDPMGVHTGDSITVAPAQTLTDREYQMM 264

Query: 228 QRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
           +  A    + IG   G S   F  +P   ++  +E+N 
Sbjct: 265 RDGALRCLREIGVDTGGSNVQFAINPDDGRMVIIEMNP 302



 Score = 65.5 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 30/221 (13%), Positives = 88/221 (39%), Gaps = 14/221 (6%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYV 129
           L+ L +P   +      L+ D+    +++    +P   +               +  P +
Sbjct: 646 LKRLGVPIIGTDPENIDLAEDRKLFGKLLDDLKIPCPANGTATSVEEACAVAARVGYPVL 705

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        +++   ++ +   + ++ +++    +L+++++ D  E+    +GD +  
Sbjct: 706 VRPSYVLGGRAMVIAYDEEMVRQYMREAVTFSQERPVLVDRFLEDATEVDVDALGDGTDV 765

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           +    +   +    E    S +S+ VLPA+ +  +I   ++       +A+   G+   +
Sbjct: 766 LIAGIMEHIE----EAGVHSGDSSCVLPAQSLSREILDTIEDYTVRLAKALKVIGL--MN 819

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
             +   +  V+ LE+N +   T     P ++   G    ++
Sbjct: 820 VQYAIQNGVVYVLEVNPRASRT----VPYVSKATGVPLPKI 856


>gi|108803832|ref|YP_643769.1| phosphoribosylamine--glycine ligase [Rubrobacter xylanophilus DSM
           9941]
 gi|108765075|gb|ABG03957.1| phosphoribosylamine--glycine ligase [Rubrobacter xylanophilus DSM
           9941]
          Length = 425

 Score = 70.2 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 49/128 (38%), Gaps = 7/128 (5%)

Query: 66  GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF----TMDSQ 121
           G ++   E   +        A+ +   K+ +K+V+   GVP     + +R          
Sbjct: 76  GGIRECFEEAGLRVFGPSRAAARIEGSKVFAKEVMRHAGVPTARFEVFDREYRALDYLRS 135

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH---GDQLLIEQYVDGIELT 178
                P V+K     +  G+ V +        +  +        G++++IE+Y++G E +
Sbjct: 136 REAEFPIVVKADGAAAGKGVTVARDRSEAESAVRAAFGGKFGKAGERIVIEEYLEGREAS 195

Query: 179 CGVMGDAS 186
             V+ D  
Sbjct: 196 VFVITDGH 203


>gi|326408028|gb|ADZ65093.1| biotin carboxylase [Brucella melitensis M28]
 gi|326537746|gb|ADZ85961.1| carbamoyl-phosphate synthase L chain ATP-binding protein [Brucella
           melitensis M5-90]
          Length = 673

 Score = 70.2 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 39/225 (17%), Positives = 73/225 (32%), Gaps = 22/225 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      +E   + +      A      K  +K ++   GVPV P    
Sbjct: 95  AIHPGYGFLSENPAFVDAVEEAGLIFIGPSAKAIRAMGLKDAAKALMEKAGVPVVPGYHG 154

Query: 114 NRFT----MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
           +             I+ P +IK   GG   G+  +         L     ++ +      
Sbjct: 155 DNQDGAFLKSEADRITYPVLIKARAGGGGKGMRRVDSAADFAAALESARREAEASFGDGA 214

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           +L+E+Y+     +   V GD   +               L+          PA  +  ++
Sbjct: 215 VLVEKYMAKPRHIEVQVFGDNHGNAV-----HLFERDCSLQRRHQKVIEEAPAPGMTEEM 269

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR----KVFWLEINV 264
              +   A  A   IG  G    +F+ D        + F++E+N 
Sbjct: 270 RAAMGEAAVKAALTIGYSGAGTVEFIADVSEGLRPDRFFFMEMNT 314


>gi|256368483|ref|YP_003105989.1| biotin carboxylase [Brucella microti CCM 4915]
 gi|255998641|gb|ACU47040.1| biotin carboxylase [Brucella microti CCM 4915]
          Length = 673

 Score = 70.2 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 39/225 (17%), Positives = 73/225 (32%), Gaps = 22/225 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      +E   + +      A      K  +K ++   GVPV P    
Sbjct: 95  AIHPGYGFLSENPAFVDAVEEAGLIFIGPSAKAIRAMGLKDAAKALMEKAGVPVVPGYHG 154

Query: 114 NRFT----MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
           +             I+ P +IK   GG   G+  +         L     ++ +      
Sbjct: 155 DNQDGAFLKSEADRITYPVLIKARAGGGGKGMRRVDSAADFAAALESARREAEASFGDGA 214

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           +L+E+Y+     +   V GD   +               L+          PA  +  ++
Sbjct: 215 VLVEKYMAKPRHIEVQVFGDNHGNAV-----HLFERDCSLQRRHQKVIEEAPAPGMTEEM 269

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR----KVFWLEINV 264
              +   A  A   IG  G    +F+ D        + F++E+N 
Sbjct: 270 RAAMGEAAVKAALTIGYSGAGTVEFIADVSEGLRPDRFFFMEMNT 314


>gi|237804471|ref|YP_002888625.1| acetyl-CoA carboxylase biotin carboxylase subunit [Chlamydia
           trachomatis B/TZ1A828/OT]
 gi|231272771|emb|CAX09677.1| biotin carboxylase [Chlamydia trachomatis B/TZ1A828/OT]
          Length = 457

 Score = 70.2 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 82/220 (37%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---S 110
            +H  +G   E+    +I E   + +      + A   DK+ +KQ+      PV P    
Sbjct: 76  AVHPGYGFLSENANFASICESCGLTFIGPSAESIATMGDKVAAKQLAKKIKCPVIPGSEG 135

Query: 111 ILVNRFT-MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSWNHGDQ 165
           ++ +    +     I  P VIK + GG   GI ++++             ++ +  +   
Sbjct: 136 VVKDEVEGIRIAEKIGFPIVIKAVAGGGGRGIRIVREKDEFYRAFTAARAEAEAGFNNPD 195

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE++++    L   V+GD   +   +            K             +  ++ 
Sbjct: 196 VYIEKFIENPRHLEVQVIGDKHGNYVYLGERDCTVQRRRQK----LIEETPSPILTPEMR 251

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +V ++A    ++ G   +   +FL D      +++E+N 
Sbjct: 252 AKVGKVAVDLARSAGYFSVGTVEFLLDKEKG-FYFMEMNT 290


>gi|221211658|ref|ZP_03584637.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia
           multivorans CGD1]
 gi|221169019|gb|EEE01487.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia
           multivorans CGD1]
          Length = 404

 Score = 70.2 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 50/278 (17%), Positives = 101/278 (36%), Gaps = 40/278 (14%)

Query: 19  GKACASALEDAGFKVSQID----------------VDRSVGLVLAHL----KPDLAFNVL 58
           GK    AL+  G +V  +D                +D + G  L  L    +P L    +
Sbjct: 27  GKEVVIALQRLGVEVIAVDRYPDAPGHQVAHRAHVIDMTDGAALRALVEAERPHLIVPEI 86

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKM-RSKQVVSSCGVPVCPSILVNRFT 117
                 D L Q  +E   +        A+ L+M++    +    + G+P  P      F 
Sbjct: 87  EAI-ATDALAQ--IEAAGLAEVIPTARATQLTMNREGIRRLAAETLGLPTSPYAFAESFD 143

Query: 118 MDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH--GDQLLIEQYVD 173
             +  +  I  P V+KP+   S  G  V++ +  +      + +       ++++E ++D
Sbjct: 144 EFAAAVAQIGMPCVVKPVMSSSGKGQSVVRTEADVKPAWDYAMAGGRVNHGRVIVEGFID 203

Query: 174 ----GIELTCGVMGDASLDV-TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
                 +LT   +  A+LD  T    P           +        P  +     ++ +
Sbjct: 204 FEYEITQLTVRAIDPATLDTRTWFCEPIGHVQV-----AGDYVESWQPQPMRAAALEKSR 258

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
            +A    +A+G RG+   +        +V++ E++ +P
Sbjct: 259 EIAHKVTEALGGRGLFGVELFVR--GDEVWFSEVSPRP 294


>gi|157692232|ref|YP_001486694.1| carbamoyl phosphate synthase large subunit [Bacillus pumilus
           SAFR-032]
 gi|157680990|gb|ABV62134.1| carbamoyl-phosphate synthase (glutamine-hydrolyzing) large subunit
           [Bacillus pumilus SAFR-032]
          Length = 1071

 Score = 70.2 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 30/221 (13%), Positives = 78/221 (35%), Gaps = 13/221 (5%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--FTMDSQHLISPPYVIKPL 133
            +    + +     + ++ + +Q + + GVP             +   + I  P +++P 
Sbjct: 650 GVKILGTSLEDLDRAENRDKFEQTLETLGVPQPKGKTATSVPEAVAIANQIGYPVLVRPS 709

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
                  + ++ ++  +   +  +   N    +LI++Y+ G E+    + D    V    
Sbjct: 710 YVLGGRAMEIVYQETELLHYMENAVKVNPQHPVLIDKYLTGKEIEVDAVSDGETVVIPGI 769

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
           +   +           +S  V P + +  +I  ++        + +   G+    F+   
Sbjct: 770 MEHIERAGVHS----GDSIAVYPPQTLSEEIKAKIAEYTIKLAKGLNIIGLLNIQFVLSK 825

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
              +VF LE+N +   T     P ++   G     L   ++
Sbjct: 826 --GEVFVLEVNPRSSRT----VPFLSKITGIPMANLATKVI 860



 Score = 69.0 bits (168), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 50/297 (16%), Positives = 113/297 (38%), Gaps = 36/297 (12%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL++ G++V  +         D +              +  ++   +PD     L G  G
Sbjct: 36  ALKEEGYEVVLVNSNPATIMTDTEMADKVYIEPLTPEFLTRIIRKERPDAILPTLGGQTG 95

Query: 64  EDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFT 117
            +  V+     +L    +    + + A   + D+   + +++    PV  S +++     
Sbjct: 96  LNLAVELSDLGVLAECGVEVLGTKLSAIQKAEDRDLFRNLMNELNEPVPESEIIHNLEEA 155

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IE 176
           M   + I  P +++P       G  +   +Q +   +      +   Q L+E+ + G  E
Sbjct: 156 MAFTNQIGFPVIVRPAYTLGGTGGGICTNEQELKEIVENGLKLSPVTQCLLEKSIAGFKE 215

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAH 235
           +   VM D+      I V   + +   +   + +S  V P++ +    Y+ ++ ++    
Sbjct: 216 IEYEVMRDSGDHA--IVVCNMENFD-PVGIHTGDSIVVAPSQTLSDREYQLLRNVSLKLI 272

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +A+G  G        DP S + + +E+N  P ++  S     +   GY   +L   +
Sbjct: 273 RALGIEGGCNVQLAIDPDSFQYYIIEVN--PRVSRSS--ALASKATGYPIAKLAAKI 325


>gi|312886483|ref|ZP_07746092.1| acetyl-CoA carboxylase, biotin carboxylase [Mucilaginibacter
           paludis DSM 18603]
 gi|311301111|gb|EFQ78171.1| acetyl-CoA carboxylase, biotin carboxylase [Mucilaginibacter
           paludis DSM 18603]
          Length = 494

 Score = 70.2 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 34/221 (15%), Positives = 82/221 (37%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     ++    +        A  +  +K+ +K       +P+ P    
Sbjct: 76  AIHPGYGFLSENAAFARMVREAGLILVGPSPEAMEVMGNKLSAKAAALKYHIPMVPGTEE 135

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK----DQSIPLDLLQSSSWNHGDQ 165
            I       D    +  P +IK   GG   G+ +++     ++ + L + +++S      
Sbjct: 136 AITDVNDARDRAVEVGFPILIKAAAGGGGKGMRIVENVDEFEEQMQLAVSEATSAFGDGS 195

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           + IE+YV     +   V+GD   ++              ++          P+  +  +I
Sbjct: 196 VFIERYVSSPRHIEIQVLGDTHGNIV-----HLFERDCSVQRRHQKVIEEAPSSVLTPEI 250

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +++ + A    +++   G    +F+ D      ++LE+N 
Sbjct: 251 RQQMGKCAVDVARSVNYTGAGTVEFIMD-DDLNFYFLEMNT 290


>gi|237798370|ref|ZP_04586831.1| acetyl-CoA carboxylase biotin carboxylase subunit [Pseudomonas
           syringae pv. oryzae str. 1_6]
 gi|331021222|gb|EGI01279.1| acetyl-CoA carboxylase biotin carboxylase subunit [Pseudomonas
           syringae pv. oryzae str. 1_6]
          Length = 447

 Score = 70.2 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 76/222 (34%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         L  DK+ +K  +    VP  P    
Sbjct: 77  AIHPGYGFLAENADFAEQVEKSGFAFIGPKAETIRLMGDKVSAKDAMKLANVPTVPGSDG 136

Query: 112 LVNRFTMDSQHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPL----DLLQSSSWNHGD 164
            +      +  +   +  P +IK   GG   G+ V+ +++ +         ++++W    
Sbjct: 137 PLPEDEEIALRIGREVGYPVIIKAAGGGGGRGMRVVHREEDLIEAAAQTRAEAAAWFSNP 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+Y+     +   V+ D                   L+          PA  I   
Sbjct: 197 MVYLEKYLTNPRHVEVQVISDGQGQAI-----HLGDRDCSLQRRHQKVLEEAPAPFIDEQ 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              +V      A   IG RG    +FL+   + + +++E+N 
Sbjct: 252 ARADVLAACVKACVDIGYRGAGTFEFLY--ENGRFYFIEMNT 291


>gi|189237354|ref|XP_969475.2| PREDICTED: similar to GA15253-PA [Tribolium castaneum]
          Length = 700

 Score = 70.2 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 83/221 (37%), Gaps = 18/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H  +G   E+       E  +I +      A      K +SK+++S  GVP+      
Sbjct: 104 AIHPGYGFLSENVEFAENCEKNKIIFMGPPASAIRDMGIKSKSKEIMSKAGVPIIGGYHG 163

Query: 113 --VNRFTMDSQHL-ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
              +R  + ++ L I  P +IK ++GG   G+ +   +      L  + S          
Sbjct: 164 EDQDRAKLKAEALKIGFPVMIKAVRGGGGKGMRIALTESEFEEALESAKSEAQKAFGDSV 223

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           +L+E++V +   +   V  D   +               ++          PA  I  ++
Sbjct: 224 VLLEKFVQEPRHVEVQVFADMHGNAV-----HLFERDCSVQRRHQKIIEEAPAPGISEEL 278

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             E+   A  A +A+G  G    +F+ D  S    ++E+N 
Sbjct: 279 RAELGAAAVRAAKAVGYVGAGTVEFILDRKSHNFHFMEMNT 319


>gi|153001365|ref|YP_001367046.1| carbamoyl-phosphate synthase L chain ATP-binding [Shewanella
           baltica OS185]
 gi|151365983|gb|ABS08983.1| Carbamoyl-phosphate synthase L chain ATP-binding [Shewanella
           baltica OS185]
          Length = 686

 Score = 70.2 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 43/222 (19%), Positives = 81/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       E   I +   G  A      K  +K ++++  VP+ P    
Sbjct: 82  AIHPGYGFLSENADFARKCEAAGIVFVGPGSDAIDAMGSKSAAKSIMTAANVPLVPGYHG 141

Query: 114 NRFTM----DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGD 164
           +  T          I  P +IK   GG   G+ +++ +  I   +       +SS+   D
Sbjct: 142 DDQTDATLKAEALKIGFPMLIKAAYGGGGKGMRIVENEGEIMEAVNSARREAASSFG-ND 200

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
           +LL+E+Y+     +   V  D   +   ++           K          PA  +   
Sbjct: 201 KLLMERYLRQPRHVEVQVFADTFGNAIYLSDRDCSIQRRHQK-----VVEEAPAPGLSDA 255

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +  ++   A  A +AI   G    +FL D      +++E+N 
Sbjct: 256 LRAQMGDAAVAAAKAIDYVGAGTVEFLLDT-DNSFYFMEMNT 296


>gi|161524134|ref|YP_001579146.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia
           multivorans ATCC 17616]
 gi|189351109|ref|YP_001946737.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia
           multivorans ATCC 17616]
 gi|160341563|gb|ABX14649.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia
           multivorans ATCC 17616]
 gi|189335131|dbj|BAG44201.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia
           multivorans ATCC 17616]
          Length = 404

 Score = 70.2 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 50/278 (17%), Positives = 101/278 (36%), Gaps = 40/278 (14%)

Query: 19  GKACASALEDAGFKVSQID----------------VDRSVGLVLAHL----KPDLAFNVL 58
           GK    AL+  G +V  +D                +D + G  L  L    +P L    +
Sbjct: 27  GKEVVIALQRLGVEVIAVDRYPDAPGHQVAHRAHVIDMTDGAALRALVEAERPHLIVPEI 86

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKM-RSKQVVSSCGVPVCPSILVNRFT 117
                 D L Q  +E   +        A+ L+M++    +    + G+P  P      F 
Sbjct: 87  EAI-ATDALAQ--IEAAGLAEVIPTARATQLTMNREGIRRLAAETLGLPTSPYAFAESFD 143

Query: 118 MDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH--GDQLLIEQYVD 173
             +  +  I  P V+KP+   S  G  V++ +  +      + +       ++++E ++D
Sbjct: 144 EFAAAVAQIGMPCVVKPVMSSSGKGQSVVRTEADVKPAWDYAMAGGRVNHGRVIVEGFID 203

Query: 174 ----GIELTCGVMGDASLDV-TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
                 +LT   +  A+LD  T    P           +        P  +     ++ +
Sbjct: 204 FEYEITQLTVRAIDPATLDTRTWFCEPIGHVQV-----AGDYVESWQPQPMRAAALEKSR 258

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
            +A    +A+G RG+   +        +V++ E++ +P
Sbjct: 259 EIAHKVTEALGGRGLFGVELFVR--GDEVWFSEVSPRP 294


>gi|86158154|ref|YP_464939.1| carbamoyl phosphate synthase large subunit [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85774665|gb|ABC81502.1| carbamoyl-phosphate synthase large subunit [Anaeromyxobacter
           dehalogenans 2CP-C]
          Length = 1077

 Score = 70.2 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 51/278 (18%), Positives = 97/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G++V  +         D               +  L+LA  KPD+   
Sbjct: 29  SGTQACKALKEEGYEVVLLNSNPATIMTDPGFADRTYVEPITPETAELILAREKPDVLLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G    +  V       L    +    + + A   + D++  K+ +   GV +  S  
Sbjct: 89  TLGGQTALNLAVALARNGALARHGVELIGASLEAIEKAEDRLLFKEAMERVGVELPKSGY 148

Query: 113 VNRFTMDS--QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
              +         I  P +I+P       G  V    +       ++ + +    +L E+
Sbjct: 149 ATSWEEARAIARDIGFPIIIRPSFTMGGEGGGVAYNLEEFEPLARRALTLSPTHTILCEE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            + G  E    VM D   +V  I   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SIIGWKEYELEVMRDRKDNVVIICSIEN----FDPMGVHTGDSITVAPAQTLTDKEYQRM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +       + IG   G S   F   P + ++  +E+N 
Sbjct: 265 REAGLRIIREIGVETGGSNIQFGVHPQTGRMVVIEMNP 302



 Score = 57.4 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/207 (14%), Positives = 74/207 (35%), Gaps = 30/207 (14%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ--HLISPPYV 129
           L  L +P   +   A   + D+ R   ++   G+    + +             I  P +
Sbjct: 655 LHALGVPIFGTAPDAIDRAEDRERFAALIEKLGLRQPRNGVARSADEAFAVARRIGYPAM 714

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV------------DGIEL 177
           ++P        + V+  D+ +   L ++   ++   +LI++++            DG ++
Sbjct: 715 VRPSYVLGGRAMEVVYDDRDLETYLREAVQASNERPVLIDRFLKDAAEVDVDVVSDGRDV 774

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           T G      ++  E A   S            ++  + P  +  +   E++R +    + 
Sbjct: 775 TVG----GVMEHIEEAGIHSG----------DSACALPPYSLRPEHVAEIERQSVAMARE 820

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINV 264
           +G  G+    F        ++ LE+N 
Sbjct: 821 LGVIGLMNVQFAI--QGDDIYVLEVNP 845


>gi|190574173|ref|YP_001972018.1| carbamoyl phosphate synthase large subunit [Stenotrophomonas
           maltophilia K279a]
 gi|190012095|emb|CAQ45717.1| putative carbamoyl-phosphate synthase large chain [Stenotrophomonas
           maltophilia K279a]
          Length = 1080

 Score = 70.2 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 35/223 (15%), Positives = 90/223 (40%), Gaps = 12/223 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTMDSQHLISPPYV 129
           LE   +P   +   +  L+ D+ R +Q+V   G+   P+ +   ++  +     I  P V
Sbjct: 654 LEANGVPVIGTSPDSIDLAEDRERFQQLVDKLGLKQPPNRIARNDQEALLLAREIGYPLV 713

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLD 188
           ++P        + ++  +  +   +  +   ++   +L+++++D  +E    ++ D   +
Sbjct: 714 VRPSYVLGGRAMEIVYGEADLARYVRDAVKVSNDSPVLLDRFLDNAVECDVDIIADKEGN 773

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           V    V   +       +S  +S  + P  +  +   E++R      +A+   G+  + F
Sbjct: 774 VLIGGV--MEHIEEAGVHSGDSSCSLPPYSLSAETQAELRRQVVELAKALNVVGLMNTQF 831

Query: 249 LF---DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
                D  +  ++ LE+N +   T     P ++   G    ++
Sbjct: 832 AIQTSDEGADTIYLLEVNPRASRT----VPFVSKATGMPLAKI 870



 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 47/278 (16%), Positives = 101/278 (36%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL D G++V  +         D +            ++V  ++A  KPD    
Sbjct: 29  SGAQACKALRDEGYRVVLVNSNPATIMTDPEMADAVYIEPINWQTVEKIIAKEKPDALLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV--PVCPS 110
            + G    +  +      +LE   +    +   A  ++ D+   +  +   G+  P    
Sbjct: 89  TMGGQTALNCALDLADNGVLEKYNVELIGAKREAIRMAEDRELFRVAMGEIGLECPTAAV 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  ++ Q  +  P +I+P       G  +    + +   + +    +   ++L+E+
Sbjct: 149 AHTLDEALEIQTRVGYPTIIRPSFTLGGSGGGIAYNREELVEIVSRGLELSPTTEVLVEE 208

Query: 171 YVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            V G  E    V+ D + + +   ++   D           +S  V PA+ +    Y+ +
Sbjct: 209 SVLGWKEFEMEVVRDTADNCIIVCSIENLDPMGVHT----GDSITVAPAQTLTDKEYQRL 264

Query: 228 QRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + +V  +E+N 
Sbjct: 265 RDASIAVLRKIGVDTGGSNVQFGINPKTGRVVVIEMNP 302


>gi|167750864|ref|ZP_02422991.1| hypothetical protein EUBSIR_01847 [Eubacterium siraeum DSM 15702]
 gi|167656043|gb|EDS00173.1| hypothetical protein EUBSIR_01847 [Eubacterium siraeum DSM 15702]
          Length = 1072

 Score = 70.2 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 48/277 (17%), Positives = 99/277 (35%), Gaps = 34/277 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL+  G+++  +         D D              +  ++   +PD    
Sbjct: 29  SGTQACKALKKLGYEIVLVNSNPATIMTDPDVADITYIEPLNLDRLTQIIEQERPDALLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G  G +   +     +L+   +      + A     D++  K  +   G+ +  S +
Sbjct: 89  NLGGQSGLNLCSELDKAGVLKKFNVQVIGVQVDAIERGEDRIEFKNAMKDLGIGMPRSEV 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     +  P V++P       G  ++     + +   +    +   Q+L+E+
Sbjct: 149 AYTIDEAVKIAEELKYPVVLRPAYTMGGAGGGMVYNVDELKVVCERGLQASLVGQVLVEE 208

Query: 171 YVDG-IELTCGVMGDASL-DVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEV 227
            + G  EL   V+ DA    +T   +   D           +S    P   IP D+ KE+
Sbjct: 209 CIFGWEELELEVVRDADNNKITVCFIENIDPIGVHT----GDSFCSAPMLTIPEDVQKEL 264

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           Q +++   ++I   G     F  +P + ++  +EIN 
Sbjct: 265 QEMSYRIIESIEVIGGCNCQFARNPETGRIVVIEINP 301



 Score = 56.3 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 31/226 (13%), Positives = 80/226 (35%), Gaps = 14/226 (6%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-ILVN-RFTMDSQHLISPPYV 129
           L+   +    +      L+ D+   + ++   G+P+  S + VN    +   + I  P +
Sbjct: 647 LKKYGVNILGTTPETIDLAEDRDHFRAMMDKLGIPMPESGMAVNVDEALKIANRIGYPVM 706

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P       G+ ++  D+ + + +  +        +LI++++    E     + D    
Sbjct: 707 VRPSYVLGGRGMEIVHDDEMMKVYMSAAVGVTPDRPILIDRFLHHATECEADAISDGK-- 764

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
                VP    +       S +S  +LP+  +       ++         +   G+   +
Sbjct: 765 --NCFVPAVMEHIELAGVHSGDSACILPSMNLTEKQVATIKDYTKKIAVEMNVCGL--MN 820

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
             +      V+ LE N +   T     P ++     +  +L   ++
Sbjct: 821 MQYAIEDDTVYVLEANPRASRT----VPLVSKVCDINMVQLATQII 862


>gi|118603020|ref|YP_904235.1| acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha /
           biotin carboxylase [Candidatus Ruthia magnifica str. Cm
           (Calyptogena magnifica)]
 gi|118567959|gb|ABL02764.1| acetyl-CoA carboxylase carboxyltransferase subunit alpha
           [Candidatus Ruthia magnifica str. Cm (Calyptogena
           magnifica)]
          Length = 454

 Score = 70.2 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 85/222 (38%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E       +E     +         +  +K+ + + +   GVP  P    
Sbjct: 82  AIHPGYGFLSESADFAQQVEKSGFIFIGPHADNIRVMGNKVAAIKTMQKSGVPCVPGSNA 141

Query: 114 NRFTMDSQHL-----ISPPYVIKPLKGGSSLGIIVIKKD----QSIPLDLLQSSSWNHGD 164
                 +Q+      I  P +IK   GG   G+ V++K+     SI L  +++ ++ +  
Sbjct: 142 GLTEDAAQNTKLARNIGFPIIIKASGGGGGRGMRVVEKETNLLDSIELSKIEALNFFNNS 201

Query: 165 QLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
           ++ +E+++     +   ++ D   +V  +            K          PA  I  +
Sbjct: 202 EVYMEKFLTTPRHIEIQILADEHGNVVHLGERDCSMQRRHQK-----VVEEAPAPGITSE 256

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +++      A + I  RG    +FLF   + + +++E+N 
Sbjct: 257 LRQKIGSACTDACKTINYRGAGTFEFLF--ENDEFYFIEMNT 296


>gi|153951249|ref|YP_001397881.1| acetyl-CoA carboxylase [Campylobacter jejuni subsp. doylei 269.97]
 gi|152938695|gb|ABS43436.1| acetyl-CoA carboxylase, biotin carboxylase [Campylobacter jejuni
           subsp. doylei 269.97]
          Length = 481

 Score = 70.2 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 39/222 (17%), Positives = 86/222 (38%), Gaps = 20/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+       E   I +            +K  ++++++  G+P+ P    
Sbjct: 78  AIHPGYGFLSENYEFAKACEDAGIIFIGPKSEVIYKMGNKNIARKLMAENGIPIVPGTEK 137

Query: 112 ---LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGD 164
                 +        I  P ++K   GG   GI V+ K+Q +         ++ ++ + D
Sbjct: 138 LNSYTLKEIKIFAEKIGYPVILKASGGGGGRGIRVVHKEQDLENAFESCKREALTYFNND 197

Query: 165 QLLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
           ++ +E+Y V+   +   ++GD   ++  +            K        + P   I  +
Sbjct: 198 EVFMEKYVVNPRHIEFQILGDNYGNIIHLCERDCSIQRRHQKM-----IEIAPCPGISDN 252

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + K +   A  A +A+G       +FL D  +R  +++E+N 
Sbjct: 253 LRKTMGVTAVAAAKAVGYTNAGTIEFLLDDYNR-FYFMEMNT 293


>gi|84393222|ref|ZP_00991984.1| carbamoyl-phosphate synthase large subunit [Vibrio splendidus
           12B01]
 gi|84376128|gb|EAP93014.1| carbamoyl-phosphate synthase large subunit [Vibrio splendidus
           12B01]
          Length = 1076

 Score = 70.2 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 49/278 (17%), Positives = 98/278 (35%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D D              V  ++A  KPD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPDMADATYIEPIQWEVVRNIIAKEKPDAVLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV--PVCPS 110
            + G    +  +      +LE   +    +   A   + D+ R  + + S G+  P   +
Sbjct: 89  TMGGQTALNCALDLEKYGVLEEFGVEMIGATADAIDKAEDRSRFDKAMKSIGLECPTADT 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                     Q ++  P +I+P       G  +    +       +    +  ++LLI++
Sbjct: 149 AKTMEEAYKVQEMVGFPCIIRPSFTMGGTGGGIAYNKEEFEEICRRGLDLSPTNELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + + +   A+   D           +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCAIENFDPMGIHT----GDSITVAPAQTLTDKEYQLM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P   ++  +E+N 
Sbjct: 265 RNASLAVLREIGVETGGSNVQFGINPKDGRMVIIEMNP 302



 Score = 62.8 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 34/197 (17%), Positives = 76/197 (38%), Gaps = 10/197 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH--LISPPYV 129
           LE   +P   +   A   + D+ R +  V   G+    +  V       +    I  P V
Sbjct: 653 LEAAGVPIIGTSPDAIDRAEDRERFQVAVDRLGLLQPENATVTTMEQAVEKSREIGFPLV 712

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  +Q +     ++ S ++   +L++ ++ D IE+    + D    
Sbjct: 713 VRPSYVLGGRAMEIVYDEQDLRRYFNEAVSVSNESPVLLDSFLDDAIEVDVDAICDGERV 772

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           V    +   +    +    S +S   LPA  +  +I   ++         +G RG+  + 
Sbjct: 773 VIAGIMEHIE----QAGVHSGDSACSLPAYTLSQEIQDVMREQVEKLAFELGVRGLMNTQ 828

Query: 248 FLFDPLSRKVFWLEINV 264
           F     + +V+ +E+N 
Sbjct: 829 FAV--KNNEVYLIEVNP 843


>gi|291484104|dbj|BAI85179.1| carbamoyl phosphate synthase large subunit [Bacillus subtilis
           subsp. natto BEST195]
          Length = 1071

 Score = 70.2 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 33/225 (14%), Positives = 79/225 (35%), Gaps = 13/225 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--QHLISPPYV 129
           L    +    + +     + D+ + +Q +   GVP                   I  P +
Sbjct: 646 LSARGVKILGTSLEDLDRAEDRDKFEQALGELGVPQPLGKTATSVDQAVSIASDIGYPVL 705

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           ++P        + ++  ++ +   +  +   N    +LI++Y+ G E+    + D    V
Sbjct: 706 VRPSYVLGGRAMEIVYHEEELLHYMKNAVKINPQHPVLIDRYLTGKEIEVDAVSDGETVV 765

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               +   +           +S  V P + +  DI K++++      + +   G+    F
Sbjct: 766 IPGIMEHIERAGVHS----GDSIAVYPPQSLTEDIKKKIEQYTIALAKGLNIVGLLNIQF 821

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +      +V+ LE+N +   T     P ++   G     L   ++
Sbjct: 822 VLSQC--EVYVLEVNPRSSRT----VPFLSKITGIPMANLATKII 860



 Score = 66.3 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 47/297 (15%), Positives = 110/297 (37%), Gaps = 36/297 (12%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL++ G++V  ++ +                       +  ++   +PD     L G  G
Sbjct: 36  ALKEEGYEVILVNSNPATIMTDTEMADRVYIEPLTPEFLTRIIRKERPDAILPTLGGQTG 95

Query: 64  EDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
            +  V    + +L    +    + + A   + D+   + +++    PV  S +++     
Sbjct: 96  LNLAVELSERGVLAECGVEVLGTKLSAIQQAEDRDLFRTLMNELNEPVPESEIIHSLEEA 155

Query: 120 SQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IE 176
            +    I  P +++P       G  +   +  +   +      +   Q L+E+ + G  E
Sbjct: 156 EKFVSQIGFPVIVRPAYTLGGTGGGICSNETELKEIVENGLKLSPVHQCLLEKSIAGYKE 215

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAH 235
           +   VM D+      I V   +     +   + +S  V P++ +    Y+ ++ ++    
Sbjct: 216 IEYEVMRDSQDHA--IVVCNMENID-PVGIHTGDSIVVAPSQTLSDREYQLLRNVSLKLI 272

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +A+G  G        DP S + + +E+N  P ++  S     +   GY   +L   +
Sbjct: 273 RALGIEGGCNVQLALDPDSFQYYIIEVN--PRVSRSS--ALASKATGYPIAKLAAKI 325


>gi|229828251|ref|ZP_04454320.1| hypothetical protein GCWU000342_00308 [Shuttleworthia satelles DSM
           14600]
 gi|229792845|gb|EEP28959.1| hypothetical protein GCWU000342_00308 [Shuttleworthia satelles DSM
           14600]
          Length = 435

 Score = 70.2 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 39/218 (17%), Positives = 77/218 (35%), Gaps = 16/218 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     +     I +      +     DK   K++V   G+PV P    
Sbjct: 77  AIHPGYGFLSENAHFAGLCRENGIVFIGPDPESMEKFADKAILKELVDDAGLPVIPGTEA 136

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGDQL 166
           +      +   + I  P ++K   GG   GI +I+ D+ +    P    ++ +      L
Sbjct: 137 VPTLAEAITLANKIGYPVMLKACSGGGGRGIRLIRSDEELTRAFPEATQEAVTAFGDGAL 196

Query: 167 LIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
            +E+Y+     +   ++ D    V  +            K             +      
Sbjct: 197 YLEKYIFPARHIELQILADEQGHVVCLGERDCSLQRRNQKLL----EETPSPAVSDKQRA 252

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
           ++ RL   A + IG  G    +FL+D      +++E+N
Sbjct: 253 KMIRLVTRAAKKIGYVGAGTMEFLYDTK-GSFWFMEMN 289


>gi|188532866|ref|YP_001906663.1| carbamoyl phosphate synthase large subunit [Erwinia tasmaniensis
           Et1/99]
 gi|188027908|emb|CAO95765.1| Carbamoyl-phosphate synthase large chain [Erwinia tasmaniensis
           Et1/99]
          Length = 1074

 Score = 70.2 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 98/278 (35%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D +              V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +    Q +L    +    +   A   + D+ R    + S G+    S +
Sbjct: 89  TMGGQTALNCALELERQGVLAEFGVTMIGATADAIDKAEDRRRFDVAMKSIGLDTARSGI 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     +     +  P +I+P       G  +    +       +    +  ++LLI++
Sbjct: 149 AHTMEEALAVAADVGFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTNELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + +   +   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIEN----FDAMGIHTGDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RNASMAVLREIGVETGGSNVQFSVNPENGRLIIIEMNP 302



 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 84/221 (38%), Gaps = 14/221 (6%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYV 129
           LE   +P   +   A   + D+ R +Q V   G+    +  V    M  +   +I  P V
Sbjct: 654 LEAAGVPVIGTSPDAIDRAEDRERFQQAVERLGLKQPANATVTAIEMAVEKAAIIGYPLV 713

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  +  +      + S ++   +L+++++ D +E+    + D    
Sbjct: 714 VRPSYVLGGRAMEIVYDEIDLKRYFNTAVSVSNDAPVLLDRFLDDAVEVDVDAICDGEQV 773

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           +    +   +    +    S +S   LPA  +  +I   ++         +G RG+    
Sbjct: 774 LIGGIMEHIE----QAGVHSGDSACSLPAYTLSAEIQDVMREQVKKLAFELGVRGLMNVQ 829

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           F       +V+ +E+N +   T     P ++   G    ++
Sbjct: 830 FAV--KDNEVYLIEVNPRAART----VPFVSKATGMPLAKV 864


>gi|270007092|gb|EFA03540.1| hypothetical protein TcasGA2_TC013543 [Tribolium castaneum]
          Length = 703

 Score = 70.2 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 83/221 (37%), Gaps = 18/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H  +G   E+       E  +I +      A      K +SK+++S  GVP+      
Sbjct: 104 AIHPGYGFLSENVEFAENCEKNKIIFMGPPASAIRDMGIKSKSKEIMSKAGVPIIGGYHG 163

Query: 113 --VNRFTMDSQHL-ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
              +R  + ++ L I  P +IK ++GG   G+ +   +      L  + S          
Sbjct: 164 EDQDRAKLKAEALKIGFPVMIKAVRGGGGKGMRIALTESEFEEALESAKSEAQKAFGDSV 223

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           +L+E++V +   +   V  D   +               ++          PA  I  ++
Sbjct: 224 VLLEKFVQEPRHVEVQVFADMHGNAV-----HLFERDCSVQRRHQKIIEEAPAPGISEEL 278

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             E+   A  A +A+G  G    +F+ D  S    ++E+N 
Sbjct: 279 RAELGAAAVRAAKAVGYVGAGTVEFILDRKSHNFHFMEMNT 319


>gi|187479842|ref|YP_787867.1| methylcrotonyl-CoA carboxylase subunit alpha [Bordetella avium
           197N]
 gi|115424429|emb|CAJ50982.1| methylcrotonyl-CoA carboxylase alpha chain [Bordetella avium 197N]
          Length = 668

 Score = 70.2 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 77/221 (34%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+           I +      A A    K  +K ++   GVP+ P    
Sbjct: 77  AIHPGYGFLSENEAFAQAAAQAGIVFVGPPASAIAAMGSKSAAKALMERAGVPLVPGYHG 136

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
            R   +        I  P +IK   GG   G+ V++   +    L     ++ +    D+
Sbjct: 137 ERQDPEFLRAEADKIGYPVLIKASAGGGGKGMRVVESSAAFLEALASCQREARASFGDDR 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           +LIE+Y+     +   V  D+      +           ++          PA  +  + 
Sbjct: 197 VLIERYLQKPRHIEIQVFADSHGQCVYL-----FERDCSVQRRHQKVIEEAPAPGMTPER 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +   A  A +A+   G    +F+      + +++E+N 
Sbjct: 252 RQAMGEAAVAAARAVDYVGAGTVEFIV-ESDGRFYFMEMNT 291


>gi|288553333|ref|YP_003425268.1| acetyl-CoA carboxylase biotin carboxylase subunit [Bacillus
           pseudofirmus OF4]
 gi|288544493|gb|ADC48376.1| acetyl-CoA carboxylase biotin carboxylase subunit [Bacillus
           pseudofirmus OF4]
          Length = 455

 Score = 70.2 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 80/221 (36%), Gaps = 18/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     I    ++ +      A      K  +++ ++  GVP+ P    
Sbjct: 77  AIHPGYGFLAENADFAEICAACKVTFVGPSPQAINKMGTKDVARETMAQAGVPIVPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGD 164
            +      M     I  P +IK   GG   GI V +  + +   +       ++++    
Sbjct: 137 IVEDAEAGMKVAEEIGFPVIIKATAGGGGKGIRVARTPEELKKGMNITQQEAATAFG-NP 195

Query: 165 QLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            + IE+Y++    +   V+ D   +V  +            K             I  + 
Sbjct: 196 GVYIEKYIEDFRHVEIQVLADNHGNVVHLGERDCSIQRRLQKLL----EETPSPAITPEK 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             E+   A  A +A+   G    +F+FD  + + +++E+N 
Sbjct: 252 RAEMGAAAVAAAKAVNYSGAGTVEFIFDHNTGEFYFMEMNT 292


>gi|289581788|ref|YP_003480254.1| carbamoyl-phosphate synthase L chain ATP-binding protein [Natrialba
           magadii ATCC 43099]
 gi|289531341|gb|ADD05692.1| Carbamoyl-phosphate synthase L chain ATP-binding protein [Natrialba
           magadii ATCC 43099]
          Length = 592

 Score = 70.2 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 33/222 (14%), Positives = 74/222 (33%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELL-EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            +H  +G   E+    A +E    + +      A     +K  ++QV+    VPV P   
Sbjct: 77  AIHPGYGFLAENATFAARVEDAEGVTWVGPPSEAMEALGEKTTARQVMQEADVPVVPGTT 136

Query: 113 VNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS----SSWNHGD 164
               + D    +      P  IK   GG   G+ +++  +        +     ++   D
Sbjct: 137 DPVDSADEVRELGEEYGYPVAIKAAGGGGGRGMKIVRSAEEADDAFESAKREGEAYFDDD 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+Y++    +   ++ D         V         L+          P+  +   
Sbjct: 197 TVYVEKYLESPKHVEVQILADE-----HDTVLHLGERDCSLQRRHQKVIEEAPSPALDDS 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + + +   A    +  G       +FL      + +++E+N 
Sbjct: 252 LRESIGEAARRGVREAGYTNAGTVEFLV--EDGEFYFMEVNT 291


>gi|84368336|dbj|BAE69494.1| carbamoyl-phosphate synthase large chain [Xanthomonas oryzae pv.
           oryzae MAFF 311018]
          Length = 1090

 Score = 70.2 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 46/278 (16%), Positives = 103/278 (37%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL D G++V  +         D +            ++V  +++  KPD    
Sbjct: 39  SGAQACKALRDEGYRVVLVNSNPATIMTDPNMADAVYIEPINWQTVEKIISKEKPDALLP 98

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      +LE   +    +   A  ++ D+   +  +   G+    + +
Sbjct: 99  TMGGQTALNCALDLADHGVLEKYNVELIGAKREAIRMAEDRELFRVAMGEIGLDCPKAAV 158

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     ++ Q  +  P +I+P       G  +    + +   + +    +   ++L+E+
Sbjct: 159 AHTLEEALEIQTRVGYPTIIRPSFTLGGSGGGIAYNREELIEIVGRGLELSPTTEVLVEE 218

Query: 171 YVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            V G  E    V+ D + + +   A+   D           +S  V PA+ +   +Y+ +
Sbjct: 219 SVLGWKEFEMEVVRDTADNCIIVCAIENLDPMGVHT----GDSITVAPAQTLTDKVYQRL 274

Query: 228 QRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F   P + +V  +E+N 
Sbjct: 275 RDASIAVLRKIGVDTGGSNVQFGISPTTGRVVVIEMNP 312



 Score = 64.4 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/223 (15%), Positives = 88/223 (39%), Gaps = 12/223 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           LE   +P   +   +  L+ D+ R +Q+V + G+   P+ +       +     I  P V
Sbjct: 664 LEANGVPVIGTSPDSIDLAEDRERFQQLVDTLGLKQPPNRIARNAEEALVLAREIGYPLV 723

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLD 188
           ++P        + ++  +  +   +  +   ++   +L+++++D  +E+   ++ D   +
Sbjct: 724 VRPSYVLGGRAMEIVYGESDLARYVRDAVKVSNDSPVLLDRFLDNAVEVDVDIIADKDGN 783

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           V    V   +       +S  +S  + P  +      E++R   +  + +   G+  + F
Sbjct: 784 VLIGGV--MEHIEEAGVHSGDSSCSLPPYSLSPQTQAELRRQVVMLAEGLNVVGLMNTQF 841

Query: 249 LF---DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
                +     V+ LE+N +   T     P ++   G    ++
Sbjct: 842 AVQVNEAGDDIVYLLEVNPRASRT----VPFVSKAIGMPLAKI 880


>gi|114332421|ref|YP_748643.1| urea amidolyase related protein [Nitrosomonas eutropha C91]
 gi|114309435|gb|ABI60678.1| urea amidolyase related protein [Nitrosomonas eutropha C91]
          Length = 1206

 Score = 70.2 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 31/220 (14%), Positives = 70/220 (31%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+           I +         +   K  ++ +     VP+ P   +
Sbjct: 77  AIHPGYGFLSENARFAEQCATQGICFLGPTPEQMRIFGLKHTARMLAQQLDVPMLPGTGL 136

Query: 114 NRFTMDS---QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQL 166
                 +      I  P ++K   GG  +G+ +      +          + S      L
Sbjct: 137 LESIKIACQEALRIGYPVMLKSTAGGGGIGMRLCHSQPELVDAYESVRNLAQSNFSNAGL 196

Query: 167 LIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIY 224
            +E+Y+D    +   + GD    V  +            K          PA  +     
Sbjct: 197 FLEKYIDQARHVEVQIFGDGRGKVVALGERDCSMQRRNQK-----VIEETPAPGLSPVTR 251

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +Q  A    +++  +     ++++D  + + ++LE+N 
Sbjct: 252 TALQETAVRLGESVQYQSAGTVEYVYDAAADQFYFLEVNT 291


>gi|332188543|ref|ZP_08390263.1| carbamoyl-phosphate synthase L chain, N-terminal domain protein
           [Sphingomonas sp. S17]
 gi|332011448|gb|EGI53533.1| carbamoyl-phosphate synthase L chain, N-terminal domain protein
           [Sphingomonas sp. S17]
          Length = 665

 Score = 70.2 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 32/202 (15%), Positives = 70/202 (34%), Gaps = 16/202 (7%)

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVI 130
             + +      A A   DK+ SK++  + GV V P  L      +        I  P ++
Sbjct: 98  AGVAFIGPPPNAIAAMGDKIESKKLAKAAGVNVVPGYLGEIADTEEAVRIASDIGFPVMM 157

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQLLIEQYVD-GIELTCGVMGDA 185
           K   GG   G+ +   +  +      +          D++ IE++++    +   V+GD 
Sbjct: 158 KASAGGGGKGMRLAWSEADVREGFEATKREGLASFGDDRVFIEKFIESPRHIEIQVLGDQ 217

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
             ++  +   +        K             +  ++ + +   A    +A+G      
Sbjct: 218 HGNIVYLGERECSIQRRHQK----VVEEAPSPFVTPEMRRAMGEQAVALARAVGYYSAGT 273

Query: 246 SDFLF---DPLSRKVFWLEINV 264
            + +    DP     ++LE+N 
Sbjct: 274 VELIVSGADPSGESFYFLEMNT 295


>gi|332289528|ref|YP_004420380.1| acetyl-CoA carboxylase biotin carboxylase subunit [Gallibacterium
           anatis UMN179]
 gi|330432424|gb|AEC17483.1| acetyl-CoA carboxylase biotin carboxylase subunit [Gallibacterium
           anatis UMN179]
          Length = 448

 Score = 70.2 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 39/223 (17%), Positives = 86/223 (38%), Gaps = 23/223 (10%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+      +E     +         L  DK+ + + +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAEQVEHSGFVFIGPTADVIRLMGDKVSAIEAMKKAGVPCVPGSDG 136

Query: 111 ---ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHG 163
                +N+   +    I  P +IK   GG   G+ V++++ ++   +     ++ +  + 
Sbjct: 137 PLGRDINK-NKEIAKRIGYPIIIKASGGGGGRGMRVVRQESALEEAIAMTKAEAKAAFNN 195

Query: 164 DQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPL 221
           D + +E+Y++    +   V+ D   +   +A           K          PA  I  
Sbjct: 196 DMVYMEKYLENPRHIEIQVLADTHGNAIYLAERDCSMQRRHQK-----VVEEAPAPGITE 250

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           ++ + +      A + IG RG    +FL+   + + +++E+N 
Sbjct: 251 EMRRHIGERCANACKEIGYRGAGTFEFLY--ENGEFYFIEMNT 291


>gi|294142452|ref|YP_003558430.1| acetyl-CoA carboxylase multifunctional enzyme accADC, carboxyl
            transferase subunit alpha/carboxyl transferase subunit
            beta/biotin carboxylase [Shewanella violacea DSS12]
 gi|293328921|dbj|BAJ03652.1| acetyl-CoA carboxylase multifunctional enzyme accADC, carboxyl
            transferase subunit alpha/carboxyl transferase subunit
            beta/biotin carboxylase [Shewanella violacea DSS12]
          Length = 1518

 Score = 70.2 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 39/226 (17%), Positives = 90/226 (39%), Gaps = 28/226 (12%)

Query: 57   VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
             LH   G   E     A+     + +    + +     +K  + +     GVPV P    
Sbjct: 1018 ALHPGIGFLSESPQFAALCVNNGVNFVGPSVHSMTTMGNKSNAIKTSQDNGVPVVPGSHG 1077

Query: 111  -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI-----PLDLLQSSSWNHGD 164
             +      ++  + I  P ++K ++GG   GI V+++   +           ++++ +GD
Sbjct: 1078 ILSNAEQAVNVANEIGYPVLLKAVQGGGGKGIQVVERQGDMISLFQQTATEAAAAFGNGD 1137

Query: 165  QLLIEQYVD-GIELTCGVMGDA-----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
              L E+YV     +   ++ D       L + + +V +++    E       ST      
Sbjct: 1138 LYL-EKYVTSLRHIEVQLLRDKFGNTKVLGIRDCSVQRNNQKVVEE----SGSTM----- 1187

Query: 219  IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +P ++ ++V +       A    G    +F+++  + +V+++E+N 
Sbjct: 1188 LPPELKEKVLQYTLDLGNATDYMGAGTVEFIYNLDTNEVYFMEMNT 1233


>gi|253565916|ref|ZP_04843370.1| pyruvate carboxylase subunit A [Bacteroides sp. 3_2_5]
 gi|251945020|gb|EES85458.1| pyruvate carboxylase subunit A [Bacteroides sp. 3_2_5]
          Length = 506

 Score = 70.2 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 80/220 (36%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+           I +            DK+ ++  +   GVPV P    
Sbjct: 79  AIHPGYGFLSENATFARRCREEGITFIGPDPETMEAMGDKISARIKMIEAGVPVVPGTQD 138

Query: 114 NRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
           N  +++      + I  P ++K   GG   G+ +I     +      + S +      D 
Sbjct: 139 NLKSVEEAVELCNQIGYPVMLKASMGGGGKGMRLIHHADEVAEAYTTAKSESLSSFGDDT 198

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E++V+    +   ++GD   ++  +   +        K             I  ++ 
Sbjct: 199 VYLEKFVEEPHHIEFQILGDKHGNIIHLCERECSVQRRNQKI----VEESPSVFITPELR 254

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +++   A  A +A+   G    +FL D   R  ++LE+N 
Sbjct: 255 RDMGEKAVAAAKAVNYIGAGTIEFLVDKH-RNYYFLEMNT 293


>gi|14388188|gb|AAK60339.1| biotin carboxylase [Brassica napus]
          Length = 535

 Score = 70.2 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 80/220 (36%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
           +LH  +G   E+ L   +     I +      +  +  DK  +++ + + GVP  P    
Sbjct: 147 MLHPGYGFHSENALFVEMCREHRINFIGPNPDSIRVMGDKSTARETMKNAGVPTVPGSDG 206

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS----IPLDLLQSSSWNHGDQ 165
            +      +   + I  P +IK   GG   G+ +  +       +     ++++    D 
Sbjct: 207 LLKSTEEGVKLANEIGFPVMIKATAGGGGRGMRLANEPSEFVKLLQAAKSEAAAAFGNDG 266

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+YV +   +   ++ D   +V               K             +  ++ 
Sbjct: 267 VYLEKYVQNPRHIEFQILADKFGNVVHFGERDCSIQRRNQKLL----EEAPSPALTPELR 322

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K +   A  A  +IG  G+   +FL D      +++E+N 
Sbjct: 323 KAMGDAAVAAAASIGYVGVGTVEFLLDER-GSFYFMEMNT 361


>gi|254240448|ref|ZP_04933770.1| alpha subunit of geranoyl-CoA carboxylase, GnyA [Pseudomonas
           aeruginosa 2192]
 gi|126193826|gb|EAZ57889.1| alpha subunit of geranoyl-CoA carboxylase, GnyA [Pseudomonas
           aeruginosa 2192]
          Length = 655

 Score = 70.2 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 77/220 (35%), Gaps = 19/220 (8%)

Query: 58  LHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
           +H  +G   E+       E   + +      A      K  +K ++   GVP+ P     
Sbjct: 84  IHPGYGFLSENADFARACEEASLLFLGPPAAAIDAMGSKSAAKALMEEAGVPLVPGYHGE 143

Query: 115 RFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGDQL 166
               +        I  P ++K   GG   G+ V++ +  +   L     ++ +     ++
Sbjct: 144 AQDAETFRREAGRIGYPVLLKAAAGGGGKGMKVVEHEAELAEALSSAQREAKAAFGDARM 203

Query: 167 LIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIY 224
           L+E+Y +    +   V  D       +            K          PA  +  ++ 
Sbjct: 204 LVEKYLLKPRHVEIQVFADRHGHCLYLNERDCSIQRRHQK-----VVEEAPAPGLGAELR 258

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +   A  A QAIG  G    +FL D    + F++E+N 
Sbjct: 259 RAMGEAAVRAAQAIGYVGAGTVEFLLDER-GQFFFMEMNT 297


>gi|326789392|ref|YP_004307213.1| carbamoyl-phosphate synthase, large subunit [Clostridium
           lentocellum DSM 5427]
 gi|326540156|gb|ADZ82015.1| carbamoyl-phosphate synthase, large subunit [Clostridium
           lentocellum DSM 5427]
          Length = 1068

 Score = 70.2 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 50/276 (18%), Positives = 100/276 (36%), Gaps = 32/276 (11%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL   G ++  +              D+          +  ++A  +PD    
Sbjct: 25  SGTQACKALRKLGHQIILVNSNPATIMTDPGIADITYIEPLNAERLEEIIAKERPDWLLP 84

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G  G +   +     IL+   +      + A     D++  K+ + S G+ +  S +
Sbjct: 85  NLGGQSGLNLCSELNQLGILKKYNVEVIGVQVDAIERGEDRVEFKKTMDSLGIEMARSEV 144

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     +  P V++P       G  ++     +     +    +   Q+L+E+
Sbjct: 145 AYTVEEALAIAEQLGYPVVLRPAYTMGGAGGGLVYNTDELKTVCARGLQASLVGQVLVEE 204

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQ 228
            + G  EL   V+ DA  ++  +   ++      L   + +S    P   I  D+ KE+Q
Sbjct: 205 SILGWEELELEVVRDAKGNMITVCFIEN---IDPLGVHTGDSFCSAPMLTISEDVQKELQ 261

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           R A+   +AI   G +   F     + ++  +EIN 
Sbjct: 262 RQAYKIVEAIEVIGGTNVQFARHTETGRIIVIEINP 297



 Score = 62.1 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/197 (14%), Positives = 72/197 (36%), Gaps = 10/197 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-ILVN-RFTMDSQHLISPPYV 129
           L+   +    +       + D+   + ++    +P+  S + VN    +     I  P +
Sbjct: 643 LKKAGVNILGTSPETIDFAEDRDLFRAMMEKLEIPMPESGMAVNVEEALAIAKRIGYPVM 702

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P       G+ V+   +S+ + +  +        +LI++++ + +E     + D    
Sbjct: 703 VRPSYVLGGRGMEVVHDAESLEVYMKAAVGVTPDRPILIDRFLHNAMECEADAISDGENV 762

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
                +   +           +S  +LP+  I  +    ++       + +G RG+   +
Sbjct: 763 FVPAVMEHIELAGIHS----GDSACILPSLNISEENVAIIKDYTKRIAKEMGVRGL--MN 816

Query: 248 FLFDPLSRKVFWLEINV 264
             +     KV+ LE N 
Sbjct: 817 MQYAIEDNKVYVLEANP 833


>gi|300934238|ref|ZP_07149494.1| phosphoribosylglycinamide formyltransferase 2 [Corynebacterium
           resistens DSM 45100]
          Length = 418

 Score = 70.2 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 46/293 (15%), Positives = 98/293 (33%), Gaps = 50/293 (17%)

Query: 19  GKACASALEDAGFKVSQID--------------------VDRSVGLVLAHLKPDLAFNVL 58
           GK  A A +  G +V   D                       S+  ++ H++PD     +
Sbjct: 33  GKEVAIAFQRLGVEVHAADRYAGAPAHHVANRAHVLNLTDAASIRDLVEHVRPDFIVPEI 92

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV-SSCGVPVCPSILVNRFT 117
                ++  +Q I E   +        A+ L+M++   + +     G+P       + F 
Sbjct: 93  EAIATDE--LQRI-EEEGLATVVPTARATRLTMNREGIRTLASEELGLPTSAHSFASTFE 149

Query: 118 --MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD--LLQSSSWNHGDQLLIEQYVD 173
               +   I  P V+KP+   S  G   +     +     +  SS+  +  ++++EQY+ 
Sbjct: 150 ELALAAEDIGYPCVVKPIMSSSGKGQTFVAGPDELEEAWNVAISSARVNTHRVIVEQYIP 209

Query: 174 GIELTCGVM---------GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             +    ++         G  +    E    + D   Y   +         PA++  +  
Sbjct: 210 -FDYEVTILTVRSVDPQTGAEATWFCEPIGHRQDRGDYVESW--------QPAEMSAEAL 260

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
                +A     A+G RG+   +         V++ E++ +P      +    
Sbjct: 261 DNAHSVAARVTNALGGRGVYGVELFV--KGDDVYFSEVSPRP--HDTGMVTMA 309


>gi|260662659|ref|ZP_05863553.1| biotin carboxylase [Lactobacillus fermentum 28-3-CHN]
 gi|260552740|gb|EEX25739.1| biotin carboxylase [Lactobacillus fermentum 28-3-CHN]
          Length = 462

 Score = 70.2 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 28/198 (14%), Positives = 72/198 (36%), Gaps = 14/198 (7%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD----SQHLISPPYVIK 131
           ++ +        AL  DK  ++  +   G+P+          +         +  P ++K
Sbjct: 114 DLTFIGPSPETIALLGDKEAARLTMRRAGLPLVKGSQEPLHDLATALAQAEEVGYPVMLK 173

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQLLIEQYV-DGIELTCGVMGDAS 186
              GG   G+ +I+  + +         ++ +  + D++ +EQY+     +   V+GD  
Sbjct: 174 AAAGGGGKGMRIIRNAEEMEAKFAVAQDEARASFNDDRMYLEQYLAHPRHIEVQVIGDQY 233

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRS 246
            +   +        +   K           A +P  + + +   +  A   +   G+   
Sbjct: 234 GNALALGERDCTIQARHQK----VIEEAPAAVLPAPVREAMLAQSEQAAAQLKYEGLGTI 289

Query: 247 DFLFDPLSRKVFWLEINV 264
           +FL++      +++E+N 
Sbjct: 290 EFLYNE-DGSYYFMEMNT 306


>gi|157964762|ref|YP_001499586.1| Acetyl-CoA carboxylase, biotin carboxylase [Rickettsia massiliae
           MTU5]
 gi|157844538|gb|ABV85039.1| Acetyl-CoA carboxylase, biotin carboxylase [Rickettsia massiliae
           MTU5]
          Length = 686

 Score = 70.2 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 81/221 (36%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+     IL+   +              DK+ +K++    GV   P  + 
Sbjct: 102 AVHPGYGFLSENPNFANILKREGVVLIGPSAGTIKKMGDKIEAKKIAIEAGVSTVPGYMG 161

Query: 114 N----RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD-----LLQSSSWNHGD 164
                +  +D    I  P ++K   GG   G+ V+     +        L  ++S++  D
Sbjct: 162 TINDVKQAIDIAKEIGFPVIVKAAAGGGGRGMRVVNNPAEMANAFESAKLEAANSFS-DD 220

Query: 165 QLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           +L IE+ +     +   ++ D   +   +   +     +  K           + I  DI
Sbjct: 221 RLFIEKLIQTPRHIEIQLIADQYGNSVCLGERECSIQRHHQK----VIEEAPSSFITEDI 276

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +E+ R      Q +G       +F+ D  ++  ++LE+N 
Sbjct: 277 RQEMYRQVISLSQKVGYYSAGTVEFIVD-SNKNFYFLEMNT 316


>gi|325291025|ref|YP_004267206.1| pyruvate carboxylase [Syntrophobotulus glycolicus DSM 8271]
 gi|324966426|gb|ADY57205.1| pyruvate carboxylase [Syntrophobotulus glycolicus DSM 8271]
          Length = 1146

 Score = 70.2 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 38/223 (17%), Positives = 76/223 (34%), Gaps = 23/223 (10%)

Query: 57  VLHGNFG---EDGLV-QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            +H  +G   E+    Q   E   I +    + +     DK++SK +    GVP  P I 
Sbjct: 81  AIHPGYGFLSENPEFAQKCFE-AGIEFIGPSVHSMVNMGDKIKSKLLAHKVGVPTVPGID 139

Query: 113 VN----RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS-----SSWNHG 163
                 R  +        P ++K   GG   G+ V+   + +  +   +      ++   
Sbjct: 140 KPMQSVREAILFAEDYGYPVILKAAAGGGGRGMRVVYSQKDLEREFYSAQNESRKAFGID 199

Query: 164 DQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPL 221
            ++ IE+Y+D    +   ++ D    +  +            K          PA  I  
Sbjct: 200 -EIFIEKYLDRPKHIEVQILADKHGQIVHLYERDCSIQRRHQK-----ILEFAPAIAISA 253

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + + +   A    +A         +FL D      +++E+N 
Sbjct: 254 ALRERLCNDALKIARAAEYINAGTIEFLVDKNENH-YFIEMNP 295


>gi|167585892|ref|ZP_02378280.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia
           ubonensis Bu]
          Length = 381

 Score = 70.2 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 48/279 (17%), Positives = 95/279 (34%), Gaps = 42/279 (15%)

Query: 19  GKACASALEDAGFKVSQID----------------VDRSVGLVLAHL----KPDLAFNVL 58
           GK    AL+  G +V  +D                +D +    L  L    +P L    +
Sbjct: 27  GKEVIIALQRLGIEVIAVDRYPDAPGHQVAHRAHMIDMTDADALRALVEAERPHLIVPEI 86

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKM-RSKQVVSSCGVPVCPSILVNRFT 117
                 D L  A +E   +        A+ L+M++    +      G+P  P      F 
Sbjct: 87  EAI-ATDAL--AAIEAAGVAEVIPTARATQLTMNREGIRRLAAEELGLPTSPYAFAQSFD 143

Query: 118 M--DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH--GDQLLIEQYVD 173
               +   I  P V+KP+   S  G  V++ +  +      + +       ++++E +VD
Sbjct: 144 EFRAAVAKIGMPCVVKPVMSSSGKGQSVVRSEADVEPAWQYALAGGRVNHGRVIVEGFVD 203

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSY------ELKYSSLNSTHVLPAKIPLDIYKEV 227
             +          L V  I     D  +Y       ++ +        P  +        
Sbjct: 204 -FDYEI-----TQLTVRAIDPASGDTRTYFCEPVGHVQVAGDYVESWQPQPMSAAALARS 257

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
           + +A    +A+G RG+   +        +V++ E++ +P
Sbjct: 258 REIAHKVTEALGGRGLFGVELFVR--GDEVWFSEVSPRP 294


>gi|51473797|ref|YP_067554.1| PCCase. [Rickettsia typhi str. Wilmington]
 gi|51460109|gb|AAU04072.1| PCCase [Rickettsia typhi str. Wilmington]
          Length = 665

 Score = 70.2 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 81/221 (36%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+     IL+   +              DK+ +K++    GV   P  + 
Sbjct: 81  AVHPGYGFLSENPNFANILKREGVVLIGPSAGTIKKMGDKIEAKKIAIEAGVSTVPGYMG 140

Query: 114 N----RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD-----LLQSSSWNHGD 164
                +  +D    I  P ++K   GG   G+ V+     +        L  ++S++  D
Sbjct: 141 TIKDVKQAIDIAKEIGFPVIVKATAGGGGRGMRVVNNPAEMANAFESAKLEAANSFS-DD 199

Query: 165 QLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           +L IE+ +     +   ++ D   +   +   +     +  K           + I  +I
Sbjct: 200 RLFIEKLIQTPRHIEIQLIADQYGNSVCLGERECSIQRHHQK----VIEEAPSSFITENI 255

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +E+ R      Q +G       +F+ D  ++  ++LE+N 
Sbjct: 256 RQEMYRQVISLSQKVGYYSAGTVEFIVD-SNKNFYFLEMNT 295


>gi|23016533|ref|ZP_00056288.1| COG1038: Pyruvate carboxylase [Magnetospirillum magnetotacticum
           MS-1]
          Length = 1154

 Score = 70.2 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 32/221 (14%), Positives = 78/221 (35%), Gaps = 18/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      +    + +         L  +K+ ++ +    GVPV P+   
Sbjct: 87  AVHPGYGFLSENPDFADAVRAAGMVFVGPSSDVMRLLGNKVAARALAEKAGVPVMPATGP 146

Query: 114 NRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL----DLLQSSSWNHGDQ 165
               +         +  P ++K   GG   G+ VI+ +  +         ++ +    D+
Sbjct: 147 LPADLAECKRLAAAVGYPLMLKASWGGGGRGMRVIEAENELEELLAVARREAKAAFGNDE 206

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           + +E+ V     +   ++GD+  ++  +           ++  +       PA  +    
Sbjct: 207 VYLEKLVRRARHVEVQILGDSQGNLVHLYE-----RDCSVQRRNQKVVERAPAPYLGGQQ 261

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             E+   A    +A         +FL D  +   +++E+N 
Sbjct: 262 RLELCETAVRLARAAHYENAGTVEFLMDMETGSFYFIEVNP 302


>gi|330873651|gb|EGH07800.1| acetyl-CoA carboxylase biotin carboxylase subunit [Pseudomonas
           syringae pv. morsprunorum str. M302280PT]
          Length = 447

 Score = 70.2 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 76/222 (34%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         L  DK+ +K  +    VP  P    
Sbjct: 77  AIHPGYGFLAENADFAEQVEKSGFAFIGPKADTIRLMGDKVSAKDAMKLANVPTVPGSDG 136

Query: 112 LVNRFTMDSQHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPL----DLLQSSSWNHGD 164
            +      +  +   +  P +IK   GG   G+ V+ +++ +         ++++W    
Sbjct: 137 PLPEDETIALRIGREVGYPVIIKAAGGGGGRGMRVVHREEDLIEAAAQTRAEAAAWFSNP 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+Y+     +   V+ D                   L+          PA  I   
Sbjct: 197 MVYLEKYLTNPRHVEVQVISDGQGQAI-----HLGDRDCSLQRRHQKVLEEAPAPFIDEQ 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              +V      A   IG RG    +FL+   + + +++E+N 
Sbjct: 252 ARADVLAACVKACIDIGYRGAGTFEFLY--ENGRFYFIEMNT 291


>gi|319902054|ref|YP_004161782.1| biotin carboxylase [Bacteroides helcogenes P 36-108]
 gi|319417085|gb|ADV44196.1| biotin carboxylase [Bacteroides helcogenes P 36-108]
          Length = 503

 Score = 70.2 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 41/223 (18%), Positives = 86/223 (38%), Gaps = 23/223 (10%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       +   + +            DK+ ++Q + + GVPV P    
Sbjct: 77  AIHPGYGFLSENAEFARRCKEEGVIFIGPAAETMEAMGDKIAARQRMIAAGVPVVPGTEQ 136

Query: 114 NRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
              + +      + I  P ++K   GG   G+ +I  +  +      + S +      D 
Sbjct: 137 PLKSAEEAIRICNDIGYPVMLKASMGGGGKGMRLIHHEDEVVEAYNTARSESMSSFGDDT 196

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK---IPL 221
           + +E++V+    +   ++GD   +V  +       +  E      N   V  +    +  
Sbjct: 197 VYLEKFVEEPHHIEFQILGDNHGNVIHL-------FDRECSVQRRNQKIVEESPSPFLTP 249

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           ++ KE+   A  A +A+   G    +FL D  +R  ++LE+N 
Sbjct: 250 ELRKEMGEKAVAAAKAVNYLGAGTIEFLVDK-NRNFYFLEMNT 291


>gi|319787725|ref|YP_004147200.1| phosphoribosylglycinamide formyltransferase 2 [Pseudoxanthomonas
           suwonensis 11-1]
 gi|317466237|gb|ADV27969.1| phosphoribosylglycinamide formyltransferase 2 [Pseudoxanthomonas
           suwonensis 11-1]
          Length = 395

 Score = 70.2 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 45/278 (16%), Positives = 95/278 (34%), Gaps = 46/278 (16%)

Query: 19  GKACASALEDAGFKVSQID--------------------VDRSVGLVLAHLKPDLAFNVL 58
           GK  A  L+  G +V   D                       ++  ++A  KPDL    +
Sbjct: 24  GKEVAIELQRLGAEVIAADRYADAPAMQVAHRSHVLDMLDTFALRELIAKEKPDLVVPEI 83

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKM-RSKQVVSSCGVPVCPSILVNRFT 117
                E  LVQ  LE            A+ L+MD+    +    + G+P  P   V+   
Sbjct: 84  EAIHTET-LVQ--LETEHGQKVVPTARAARLTMDREGIRRLAAETLGLPTSPYRFVDTLE 140

Query: 118 M--DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD--LLQSSSWNHGDQLLIEQYVD 173
              ++  ++  P V+KP+   S  G   ++++  +       Q+       + ++E ++ 
Sbjct: 141 EYREAIAVVGLPCVVKPVMSSSGKGQSTVREESQVEAAWEYAQTGGRAGAGRCIVEGFI- 199

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSY-----ELKYSSLNSTHVLPAKIPLDIYKEVQ 228
                     D   ++T + V  +    +      L+          P  +     +  +
Sbjct: 200 ----------DFDYEITLLTVRHAGGTDFCEPVGHLQRDGDYRESWQPQPMSPRALERAR 249

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
            +A      +G  G+   +        +V++ E++ +P
Sbjct: 250 EIARTITDDLGGWGVFGVELFV--KGDEVWFSEVSPRP 285


>gi|288942316|ref|YP_003444556.1| phosphoribosylaminoimidazole carboxylase, ATPase subunit
           [Allochromatium vinosum DSM 180]
 gi|288897688|gb|ADC63524.1| phosphoribosylaminoimidazole carboxylase, ATPase subunit
           [Allochromatium vinosum DSM 180]
          Length = 384

 Score = 70.2 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 39/185 (21%), Positives = 67/185 (36%), Gaps = 15/185 (8%)

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGG-SS 138
            H      AL  DK+  KQ +++ G+P    + +   T +       P V K  +GG   
Sbjct: 95  IHPSPRVLALIQDKLTQKQALAAAGIPTAEFVPMPEPTPEDFAAFGYPLVQKARRGGYDG 154

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKS 197
            G+ ++K  +  P  L   S        L+E++V    EL   V      D     V + 
Sbjct: 155 RGVSILKSAEDYPRHLPVPS--------LLERFVPAAKELAVVVARGHDGDCRCYPVVEM 206

Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
            F   E          + PA+I  +  +    LA    + +G  GI   +      + ++
Sbjct: 207 VFRPGENVLDL----LLAPARIAPETAEAAVALAVRTVETLGGVGIFGVELFLTE-TGEL 261

Query: 258 FWLEI 262
              E+
Sbjct: 262 LVNEV 266


>gi|258652099|ref|YP_003201255.1| pyruvate carboxylase [Nakamurella multipartita DSM 44233]
 gi|258555324|gb|ACV78266.1| pyruvate carboxylase [Nakamurella multipartita DSM 44233]
          Length = 1138

 Score = 70.2 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 38/250 (15%), Positives = 81/250 (32%), Gaps = 15/250 (6%)

Query: 28  DAGFKVS-QIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           + G  V   +DVD S+         D  +   +G   E+  +        I +       
Sbjct: 53  ERGHPVRAYLDVD-SIVRTAVAAGADAVYPG-YGFLSENPDLAQACADAGITFIGPSAAV 110

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFT---MDSQHLISPPYVIKPLKGGSSLGIIV 143
             ++ +K  +    ++ GVPV PS   +      + +   I  P  +K + GG   G+  
Sbjct: 111 LEMAGNKATAVAAATAAGVPVLPSSAPSSDVPTLIAAAEEIGFPVFVKAVAGGGGRGMRR 170

Query: 144 IKKDQSIPLDLLQS-----SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI-AVPKS 197
           +     +P  L  +     S++      L    ++   +   ++ D      +       
Sbjct: 171 VNTPAELPEALATAMREADSAFGDPTVFLERAVIEPRHIEVQILADHRGPQGDPAGTIHL 230

Query: 198 DFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL--S 254
                 ++        V PA  +   +   +   A    + IG       +FL +     
Sbjct: 231 FERDCSVQRRHQKVIEVAPAVGLDPGLRDRICADAVAFARHIGYVNAGTVEFLVEGSGPD 290

Query: 255 RKVFWLEINV 264
            +  ++E+N 
Sbjct: 291 ARYHFIEMNP 300


>gi|258511751|ref|YP_003185185.1| acetyl-CoA carboxylase, biotin carboxylase [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257478477|gb|ACV58796.1| acetyl-CoA carboxylase, biotin carboxylase [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 447

 Score = 70.2 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 76/220 (34%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+       E   I +      A  L  DK  +K  +   GVP  P    
Sbjct: 77  AVHPGYGFLSENSDFAEACEACGITFIGPSPRAIELMGDKSTAKMTMRRAGVPTVPGSEG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
            +      +   + I  P +IK   GG   GI V++ +  +     Q+            
Sbjct: 137 LVESLEEALAIANAIGYPLIIKATAGGGGRGIRVVRDEPELRKAYDQARREAEASFGNPG 196

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+Y++    +   ++ D   +V  +            K             +  +  
Sbjct: 197 IYIEKYIERMRHVEIQILADRHGNVIHLGERDCSVQRRLQK----LVEESPCPVMTEEKR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +E+   A  A +A+   G    +F++ P     +++E+N 
Sbjct: 253 QEMGDAAVRAARAVDYVGAGTVEFIYTP-DGDFYFMEMNT 291


>gi|156938203|ref|YP_001435999.1| phosphoribosylglycinamide formyltransferase 2 [Ignicoccus
           hospitalis KIN4/I]
 gi|172044474|sp|A8ACE0|PURT_IGNH4 RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|156567187|gb|ABU82592.1| phosphoribosylglycinamide formyltransferase 2 [Ignicoccus
           hospitalis KIN4/I]
          Length = 402

 Score = 70.2 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 53/299 (17%), Positives = 104/299 (34%), Gaps = 56/299 (18%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQID----------------VD----RS 41
           A+L+G  S E    L  GK     L+  G +V  +D                +D      
Sbjct: 16  ALLLG--SGE----L--GKEVVIELQRLGVEVVAVDRYDRAPAMHVAHRRYVIDMLDYDQ 67

Query: 42  VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           V  V+   +PD+    +      D LV   LE     +      A  ++M+++  +++ +
Sbjct: 68  VVDVVRRERPDVIIPEVEAINT-DALVD--LEKEGY-FVVPNARAVKITMNRIELRRLAA 123

Query: 102 S-CGVPVCPSILVNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL--LQ 156
              GVP       +     ++    +  P +IKP    S  G  +    +          
Sbjct: 124 EKVGVPTTRYAFAHNEDEAAEACEKVGYPCLIKPEMSSSGHGHTLASSPEEAREGFKRAL 183

Query: 157 SSSWNHGDQLLIEQYVDG---------IELTCGVMGDASLDVTEIAVPKSDFYSYELKYS 207
             +    ++ ++E++V+             T   +    L   E   PK  +Y YE    
Sbjct: 184 KEARGKSERAIVEEFVEIDRELTALTYRHDTGNGIETVPLPPVEHKRPKGIYYYYESW-- 241

Query: 208 SLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
                   PA +  ++ K+ + +A      +G  GI   + +      +V + E++ +P
Sbjct: 242 -------HPATVNDEVVKKAKDIAVKVVNELGGLGIFGVE-ILVTKDGRVLFSEVSPRP 292


>gi|88606799|ref|YP_504971.1| propionyl-CoA carboxylase, alpha subunit [Anaplasma phagocytophilum
           HZ]
 gi|88597862|gb|ABD43332.1| propionyl-CoA carboxylase, alpha subunit [Anaplasma phagocytophilum
           HZ]
          Length = 659

 Score = 70.2 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 35/240 (14%), Positives = 82/240 (34%), Gaps = 16/240 (6%)

Query: 34  SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDK 93
           S +D+D+ +  V      D      +G   E+      L    I +      +  +  DK
Sbjct: 59  SYLDIDK-ICNVAVATGADAVHPG-YGFLSENAEFPDRLSESGIGFIGPSSASMRMMADK 116

Query: 94  MRSKQVVSSCGVPVCPSIL----VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS 149
           + SK++    GV V P  +         +     +  P +IK   GG   G+ +++    
Sbjct: 117 VVSKKIAKDAGVAVVPGYMGVVESAAEALSIAESMGFPVMIKAAAGGGGKGMRIVRSVGE 176

Query: 150 IPLDLL----QSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYEL 204
           +    +    ++       ++ IE+Y++    +   ++ D   +V  +   +        
Sbjct: 177 MEQAFVSATNEAEKSFSDCRIFIEKYIESPRHIEIQIIADKHGNVVCLGERECSIQRNNQ 236

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K             +     + +        + +G       +F+ +   R+ ++LE+N 
Sbjct: 237 K----VIEETPSPFLDEKTRRAMYAQCVSLAEKVGYFSAGTVEFIVNA-EREFYFLEMNT 291


>gi|298364390|gb|ADI79331.1| chloroplast biotin carboxylase [Brassica oleracea]
          Length = 535

 Score = 70.2 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 80/220 (36%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
           +LH  +G   E+ L   +     I +      +  +  DK  +++ + + GVP  P    
Sbjct: 147 MLHPGYGFLSENALFVEMCREHRINFIGPNPDSIRVMGDKSTARETMKNAGVPTVPGSDG 206

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS----IPLDLLQSSSWNHGDQ 165
            +      +   + I  P +IK   GG   G+ +  +       +     ++++    D 
Sbjct: 207 LLKSTEEGVKLANEIGFPVMIKATAGGGGRGMRLANEPSEFVKLLQAAKSEAAAAFGNDG 266

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+YV +   +   ++ D   +V               K             +  ++ 
Sbjct: 267 VYLEKYVQNPRHIEFQILADKFGNVVHFGERDCSIQRRNQKLL----EEAPSPALTPELR 322

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K +   A  A  +IG  G+   +FL D      +++E+N 
Sbjct: 323 KAMGDAAVAAAASIGYVGVGTVEFLLDER-GSFYFMEMNT 361


>gi|162319798|ref|YP_451768.2| carbamoyl phosphate synthase large subunit [Xanthomonas oryzae pv.
           oryzae MAFF 311018]
          Length = 1080

 Score = 70.2 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 46/278 (16%), Positives = 103/278 (37%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL D G++V  +         D +            ++V  +++  KPD    
Sbjct: 29  SGAQACKALRDEGYRVVLVNSNPATIMTDPNMADAVYIEPINWQTVEKIISKEKPDALLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      +LE   +    +   A  ++ D+   +  +   G+    + +
Sbjct: 89  TMGGQTALNCALDLADHGVLEKYNVELIGAKREAIRMAEDRELFRVAMGEIGLDCPKAAV 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     ++ Q  +  P +I+P       G  +    + +   + +    +   ++L+E+
Sbjct: 149 AHTLEEALEIQTRVGYPTIIRPSFTLGGSGGGIAYNREELIEIVGRGLELSPTTEVLVEE 208

Query: 171 YVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            V G  E    V+ D + + +   A+   D           +S  V PA+ +   +Y+ +
Sbjct: 209 SVLGWKEFEMEVVRDTADNCIIVCAIENLDPMGVHT----GDSITVAPAQTLTDKVYQRL 264

Query: 228 QRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F   P + +V  +E+N 
Sbjct: 265 RDASIAVLRKIGVDTGGSNVQFGISPTTGRVVVIEMNP 302



 Score = 64.0 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/223 (15%), Positives = 88/223 (39%), Gaps = 12/223 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           LE   +P   +   +  L+ D+ R +Q+V + G+   P+ +       +     I  P V
Sbjct: 654 LEANGVPVIGTSPDSIDLAEDRERFQQLVDTLGLKQPPNRIARNAEEALVLAREIGYPLV 713

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLD 188
           ++P        + ++  +  +   +  +   ++   +L+++++D  +E+   ++ D   +
Sbjct: 714 VRPSYVLGGRAMEIVYGESDLARYVRDAVKVSNDSPVLLDRFLDNAVEVDVDIIADKDGN 773

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           V    V   +       +S  +S  + P  +      E++R   +  + +   G+  + F
Sbjct: 774 VLIGGV--MEHIEEAGVHSGDSSCSLPPYSLSPQTQAELRRQVVMLAEGLNVVGLMNTQF 831

Query: 249 LF---DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
                +     V+ LE+N +   T     P ++   G    ++
Sbjct: 832 AVQVNEAGDDIVYLLEVNPRASRT----VPFVSKAIGMPLAKI 870


>gi|219849134|ref|YP_002463567.1| phosphoribosylglycinamide synthetase [Chloroflexus aggregans DSM
           9485]
 gi|219543393|gb|ACL25131.1| phosphoribosylglycinamide synthetase [Chloroflexus aggregans DSM
           9485]
          Length = 418

 Score = 70.2 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 36/175 (20%), Positives = 62/175 (35%), Gaps = 13/175 (7%)

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYVIKP 132
           L +P+  +   A+A + DK   +Q+ +  GVP     L             I  P V+KP
Sbjct: 95  LGLPF--NRPEAAAAARDKHLMRQLFARAGVPSPAFRLCTTADDLTTVAQSIPFPCVVKP 152

Query: 133 LKGGSSLGIIVIKKDQSIPL------DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186
           L+   S G+I                 LL         + L+E++V G E+    + D  
Sbjct: 153 LRLNGSRGVIRADNPDQFVAATRRLTALLDRVEGPRTHEFLVEEFVPGFEVALEGLIDRG 212

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241
                    K D            + +V P+++P      +  +   A +A+G  
Sbjct: 213 QVQVLALFDKPDPLDGP---FFEETIYVTPSRLPTATQAAICDVTAAAARAVGLE 264


>gi|172057952|ref|YP_001814412.1| carbamoyl-phosphate synthase, large subunit [Exiguobacterium
           sibiricum 255-15]
 gi|226700928|sp|B1YIR9|CARB_EXIS2 RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|171990473|gb|ACB61395.1| carbamoyl-phosphate synthase, large subunit [Exiguobacterium
           sibiricum 255-15]
          Length = 1070

 Score = 70.2 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 35/226 (15%), Positives = 88/226 (38%), Gaps = 15/226 (6%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS---ILVNRFTMDSQHLISPPY 128
           LE   +    + +     + D+ + +  ++   +P  P    + V   T  +   +  P 
Sbjct: 646 LEAEGVKILGTSLEDLDRAEDRKQFEAALTQLDIPQPPGKTAVTVTEATA-AASELGYPV 704

Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD 188
           +++P        + ++  +Q +   +  +   +    +L+++Y+ G+EL    + D    
Sbjct: 705 LVRPSYVLGGRAMEIVYGEQELEHYMKHAVIASPERPVLVDRYLTGMELEVDAICDG--- 761

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
            T++ +P    +       S +S  V P  ++P  I + +        +A   +G+    
Sbjct: 762 -TDVVIPGIMEHIERAGIHSGDSIGVYPPQRVPQAIKELIVDYTTRIAKAFRIKGLLNIQ 820

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           F+F     +++ LE+N +   T     P ++   G     L   ++
Sbjct: 821 FVF--ADGELYVLEVNPRASRT----VPFISKVTGLPVARLATNVI 860



 Score = 61.7 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 53/314 (16%), Positives = 113/314 (35%), Gaps = 37/314 (11%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI---------DVD------------RSVGLV 45
           G ++E + +   G     AL++ G++V  +         D                V  +
Sbjct: 21  GQAAEFDYA---GTQACQALKEEGYEVVLVNSNPATIMTDPTVADRVYIEPLQAEFVARI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   +PD     L G  G +  V+     +L    +    + + A   + D+   ++++ 
Sbjct: 78  IRKERPDALLATLGGQTGLNLAVELDRLGVLAEYGVELLGTKLTAIEEAEDRDLFRKLMF 137

Query: 102 SCGVPVCPSILVNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G  V  S +V+      Q    I  P +I+P       G  + +        +     
Sbjct: 138 KLGHGVPESEIVHTVEEAEQFCAKIGLPIIIRPAYTLGGTGGGIAETMDEFIRIVEGGLK 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   Q+L+E+ + G  E+   VM DA+     I V   + +     ++  +        
Sbjct: 198 ASPATQVLLEKSIAGMKEVEFEVMRDATNQA--IIVCAMENFDPVGVHTGDSIVFAPTQT 255

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278
           +    Y+ ++ ++    + +G  G     F  DP+S   + +E+N  P ++  S     +
Sbjct: 256 LSDRDYQMMRNVSLDIIRVLGIEGGCNIQFALDPVSFTYYVIEVN--PRVSRSS--ALAS 311

Query: 279 AYAGYSFRELLLWM 292
              GY   +L   +
Sbjct: 312 KATGYPIAKLAAKI 325


>gi|322384094|ref|ZP_08057812.1| carbamoyl phosphate synthase large subunit-like protein
           [Paenibacillus larvae subsp. larvae B-3650]
 gi|321151174|gb|EFX44483.1| carbamoyl phosphate synthase large subunit-like protein
           [Paenibacillus larvae subsp. larvae B-3650]
          Length = 1069

 Score = 70.2 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 46/286 (16%), Positives = 103/286 (36%), Gaps = 33/286 (11%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI---------DVD------------RSVGLV 45
           G ++E + +   G     AL++ G +V  I         D +              +  +
Sbjct: 21  GQAAEFDYA---GTQACEALKEEGMEVVLINSNPATIMTDTNMADKVYIEPITPEFITQI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   +PD     L G  G +  V+     +LE   +    + + A   + D+   ++++ 
Sbjct: 78  IRQEQPDGLLPTLGGQTGLNMAVELAKMGVLERENVRLLGTQLDAIERAEDRDLFRELMK 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
               PV  S +V      ++    I  P +++P       G  +   ++ +   +     
Sbjct: 138 ELEQPVPESTIVTTVEEAVNFAGEIGYPIIVRPAYTLGGTGGGICGTEEELMEVVSSGIR 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
           ++   Q L+E+ + G  E+   VM D   +   I V   +       ++  +        
Sbjct: 198 YSPIGQCLVEKSIAGMKEVEYEVMRDKHDN--CIVVCNMENLDPVGVHTGDSIVVAPSQT 255

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +    Y+ ++  +    +A+   G     F  DP S + + +E+N 
Sbjct: 256 LSDREYQMLRSASLKIIRALNIEGGCNVQFALDPQSYQYYVIEVNP 301



 Score = 61.3 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/196 (12%), Positives = 70/196 (35%), Gaps = 9/196 (4%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYV 129
           L    +    + +     + ++   + ++++  +   P   V        +      P +
Sbjct: 653 LAKAGVRILGTDLKNIDRAENRKEFEALLTALDIAQPPGGTVTNVDEAVGTASQFGYPVL 712

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           ++P        + ++  D+ +   +  +   N    +LI++Y+ G E+    + D    +
Sbjct: 713 VRPSYVLGGRAMEIVYSDEELLSYMEYAVKINPEHPVLIDRYMLGKEVEVDAICDKETVL 772

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               +   +           +S  V P + +  DI +++  +     + +   G+    F
Sbjct: 773 IPGIMEHVERAGVHS----GDSIAVYPPQTLSDDIKRKIVEITTKIAKGLEIVGLVNIQF 828

Query: 249 LFDPLSRKVFWLEINV 264
           +      KV+ +E+N 
Sbjct: 829 VI--FQDKVYVIEVNP 842


>gi|302671038|ref|YP_003830998.1| carbamoyl-phosphate synthase large subunit CarB2 [Butyrivibrio
           proteoclasticus B316]
 gi|302395511|gb|ADL34416.1| carbamoyl-phosphate synthase large subunit CarB2 [Butyrivibrio
           proteoclasticus B316]
          Length = 1082

 Score = 70.2 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 52/276 (18%), Positives = 100/276 (36%), Gaps = 32/276 (11%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL   G+++  +         D +              V  V+   +PD    
Sbjct: 29  SGTQACKALRSLGYEIVLVNSNPATIMTDPEMADKTYIEPLNVERVAAVIEKERPDALLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            L G  G +   +     IL+   +      + A     D+   K+ +   G+ +  S  
Sbjct: 89  NLGGQSGLNLCSELYKAGILDKFNVKVIGVQVDAIERGEDRTEFKKTMDMLGIEMARSKA 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     +  P V++P       G  ++   + +     +    +   Q+L+E+
Sbjct: 149 CYSIEEALAEADELGYPVVLRPAYTMGGAGGGLVYNKEELQTVCARGLQASIIHQVLVEE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQ 228
            + G  EL   V+ D   ++  +   ++      +   + +S    P   I  D+ KE+Q
Sbjct: 209 SILGWEELELEVVRDKDNNMITVCFIENVD---PVGVHTGDSFCTAPMLTISEDLQKELQ 265

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           R A+   + IG  G +   F  DP+S +V  +EIN 
Sbjct: 266 RQAYKIVEHIGVIGGTNVQFAHDPVSGRVIVIEINP 301



 Score = 55.5 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 29/237 (12%), Positives = 82/237 (34%), Gaps = 14/237 (5%)

Query: 68  VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLIS 125
           + A L+   +    +      L+ D+ + + ++   G+P+  + + +      +    I 
Sbjct: 649 LAAKLKEEGVNILGTTPEVIDLAEDRDQFRMMMEKLGIPMAEAGMASDVEEAKEIAARIG 708

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGD 184
            P +++P       G+ +++  + +   +  +        +LI++++ + +E     + D
Sbjct: 709 YPVMVRPSFVLGGRGMEIVRSKEQMEEYMRAAVGVTPDRPILIDRFLHNALECEADAISD 768

Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGI 243
                    +   +           +S  ++P+K I     K ++         +   G+
Sbjct: 769 GEHAFVPAVMEHIELAGIHS----GDSACIIPSKHISDKHLKTIEEYTRKIAVEMNVVGL 824

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
              +  +      V+ LE N +   T     P ++   G     L   ++      R
Sbjct: 825 --MNMQYAIEDDTVYVLEANPRASRT----VPLVSKVCGIRMVPLATDIITAELTGR 875


>gi|302685858|ref|XP_003032609.1| hypothetical protein SCHCODRAFT_75872 [Schizophyllum commune H4-8]
 gi|300106303|gb|EFI97706.1| hypothetical protein SCHCODRAFT_75872 [Schizophyllum commune H4-8]
          Length = 1197

 Score = 70.2 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 88/222 (39%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
           ++H  +G   E+      +E   I +            DK +++ +   CGVPV P    
Sbjct: 121 MIHPGYGFLSENAEFARKVEQAGIAFVGPSPEVIDGLGDKTKARTLAMRCGVPVVPGTPG 180

Query: 112 LVNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS-----SSWNHGD 164
            V+ +T           P +IK   GG   G+ V+++        +++     S++    
Sbjct: 181 PVDSYTDGDAFIKEYGFPVIIKAAMGGGGRGMRVVREQSDFKDAFMRAVSEAKSAFG-DG 239

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLD 222
            + IE++++    +   ++ DA  +               ++        V PA  +P +
Sbjct: 240 TVFIERFLERPRHIEVQLLADAQGNTI-----HLFERDCSVQRRHQKVVEVAPATHLPDE 294

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + + +   A    +++G R    ++FL D + R  +++EIN 
Sbjct: 295 VRQAILSDAIKLAKSVGYRNAGTAEFLVDQMGRH-YFIEINP 335


>gi|222529168|ref|YP_002573050.1| phosphoribosylaminoimidazole carboxylase ATPase subunit
           [Caldicellulosiruptor bescii DSM 6725]
 gi|222456015|gb|ACM60277.1| phosphoribosylaminoimidazole carboxylase, ATPase subunit
           [Caldicellulosiruptor bescii DSM 6725]
          Length = 403

 Score = 70.2 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 41/197 (20%), Positives = 73/197 (37%), Gaps = 16/197 (8%)

Query: 73  ELLEIPY-THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIK 131
           +L +  Y  +       +  DK + KQ+  S  +PV     V    +        P V K
Sbjct: 108 DLYDKGYQIYPSPYCLEVIQDKYKQKQMFKSANLPVPRFEKVTHLDVSFFKKFGFPCVQK 167

Query: 132 PLKGG-SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDV 189
             KGG    G++VIK  + +   L   S         +E+ VD   EL   V  +   DV
Sbjct: 168 ASKGGYDGRGVVVIKDKEDLNKVLETES--------FVEELVDIKKELAVMVARNKKGDV 219

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
               V +  F     + +++    V PA+I   I +  + +A    + +   G+   +  
Sbjct: 220 KSYPVVEMVF----EQSANILDFLVAPARIDEKIAQRAREVAIKVVEVLDGVGVFGVELF 275

Query: 250 FDPLSRKVFWLEINVQP 266
                 ++   E+  +P
Sbjct: 276 LTK-DDEILINEVAPRP 291


>gi|88860981|ref|ZP_01135616.1| acetyl-CoA carboxylase [Pseudoalteromonas tunicata D2]
 gi|88816909|gb|EAR26729.1| acetyl-CoA carboxylase [Pseudoalteromonas tunicata D2]
          Length = 446

 Score = 70.2 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 36/222 (16%), Positives = 77/222 (34%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+      +E     +         +  DK+ + + +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFADQVEKSGFIFIGPRGDTIRIMGDKVAAIEAMRKAGVPCVPGSDG 136

Query: 111 --ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGD 164
                N         I  P +IK   GG   G+ V++ +  +   +     ++  +    
Sbjct: 137 PLTADNERNKQIAKRIGFPVIIKAAGGGGGRGMRVVRSESELIDSIALTQQEAKQFFGNG 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E++++    +   V+ D   +   +            K          PA  I  +
Sbjct: 197 MVYMEKFLENPRHIEVQVLADGQGNAVHLGERDCSMQRRHQK-----VVEEAPAPGITAE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + K +      A   IG RG    +FL+   + + +++E+N 
Sbjct: 252 MRKFIGERCTRACIEIGYRGAGTFEFLY--ENGEFYFIEMNT 291


>gi|307320826|ref|ZP_07600236.1| Carbamoyl-phosphate synthase L chain ATP-binding [Sinorhizobium
           meliloti AK83]
 gi|306893536|gb|EFN24312.1| Carbamoyl-phosphate synthase L chain ATP-binding [Sinorhizobium
           meliloti AK83]
          Length = 662

 Score = 69.8 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 39/225 (17%), Positives = 77/225 (34%), Gaps = 22/225 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      +    + +      A      K  +K ++   GVPV P    
Sbjct: 77  AIHPGYGFLSENADFAEAVAEAGMIFVGPPPAAIRAMGLKDAAKALMERSGVPVVPGYHG 136

Query: 114 NRFTM----DSQHLISPPYVIKPLKGGSSLGIIVIKKDQS----IPLDLLQSSSWNHGDQ 165
                    D    I  P +IK   GG   G+  +++ +     +     ++ S      
Sbjct: 137 EEQDASFLADRAREIGYPVLIKARAGGGGKGMRRVERQEDFGPALEAARREAESAFGDGS 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           +L+E+Y+     +   V GD   ++              L+          PA  +  ++
Sbjct: 197 VLLERYLTKPRHIEMQVFGDRHGNIV-----HLFERDCSLQRRHQKVIEEAPAPGMTAEV 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR----KVFWLEINV 264
            + +   A  A  AIG  G    +F+ D  +       +++E+N 
Sbjct: 252 RRAMGDAAVRAAHAIGYVGAGTVEFIADVTNGLWPDHFYFMEMNT 296


>gi|300782864|ref|YP_003763155.1| acetyl/propionyl-CoA carboxylase, biotin carboxylase subunit fused
           with biotin carboxyl carrier subunit [Amycolatopsis
           mediterranei U32]
 gi|299792378|gb|ADJ42753.1| acetyl/propionyl-CoA carboxylase, biotin carboxylase subunit fused
           with biotin carboxyl carrier subunit [Amycolatopsis
           mediterranei U32]
          Length = 599

 Score = 69.8 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 32/205 (15%), Positives = 65/205 (31%), Gaps = 15/205 (7%)

Query: 69  QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLI 124
           QA+L+   + +      A     DK+ ++ +    G P+ P     +      +      
Sbjct: 104 QAVLD-AGLTWIGPSPQAIRDLGDKVTARHIAMRAGAPLVPGTKEPVKDASEIVAFADEH 162

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPL----DLLQSSSWNHGDQLLIEQYVD-GIELTC 179
             P  IK   GG   G+ V +  + IP        ++ +     +  +E+Y+D    +  
Sbjct: 163 GLPVAIKAAFGGGGRGLKVARTREEIPELFESATREAVAAFGRGECFVERYLDKPRHVEA 222

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
            V+ D       +            K             +  +  K +   A    +  G
Sbjct: 223 QVLADMHGTAIVVGTRDCSLQRRHQK----LVEEAPAPFLNDEQRKRIHESAKAICKEAG 278

Query: 240 CRGISRSDFLFDPLSRKVFWLEINV 264
             G    ++L       + +LE+N 
Sbjct: 279 YYGAGTVEYLV-ATDGTISFLEVNT 302


>gi|302922225|ref|XP_003053421.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256734362|gb|EEU47708.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 1174

 Score = 69.8 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 54/289 (18%), Positives = 105/289 (36%), Gaps = 37/289 (12%)

Query: 4   LMGGISSEREVSLSSGKACASALEDAGF--------------------KVSQIDVDRS-V 42
           L  G + E + S   G     AL++AG                     +V  + V    V
Sbjct: 103 LAIGQAGEFDYS---GSQALKALKEAGVASVLINPNIATIQTNHSLADEVYYLPVTPEYV 159

Query: 43  GLVLAHLKPDLAFNVLHG----NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQ 98
             V+   KPD  F    G    N G +     + E   +    + +    LS D+    +
Sbjct: 160 TYVIEKEKPDGIFLSFGGQTALNLGVEMQRLGLFEKYGVKVLGTSVRTLELSEDRDLFAK 219

Query: 99  VVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
            +    +P+  SI V      +D+   +  P +++       LG      ++ +    + 
Sbjct: 220 ALEEIEIPIAKSIAVGTIEEALDAAEKVGYPIIVRAAYALGGLGSGFANNEEELR--NMA 277

Query: 157 SSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215
           + S     Q+L+E+ + G  E+   V+ DA+ +   I V   + +   L   + +S  V 
Sbjct: 278 ARSLTLSPQILVEKSLKGWKEVEYEVVRDANNN--CITVCNMENFD-PLGIHTGDSIVVA 334

Query: 216 PAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
           P++ +  + Y  ++  A    + +G  G     +   P       +E+N
Sbjct: 335 PSQTLSDEEYHMLRSAAIKIVRHLGVVGECNVQYALQPDGLDYRVIEVN 383



 Score = 54.4 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/168 (14%), Positives = 64/168 (38%), Gaps = 6/168 (3%)

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVI 130
           E        +       + D+ +  +++ S GV       +   +   +    +  P ++
Sbjct: 736 ETGGAKVLGTDPKDIDKAEDRQKFSEILDSIGVDQPAWKELTSVKAAEEFADEVGYPVLV 795

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190
           +P    S   + VI+  + +   L  +S+ +    ++I ++++G +    +  D      
Sbjct: 796 RPSYVLSGAAMTVIRSQEDLKDKLEAASNVSPDHPVVITKFIEGAQE---IDVDGVASKG 852

Query: 191 EIAVPKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQA 237
           ++ V     +  +    S ++T V  PA +     + V+ +A    +A
Sbjct: 853 KLVVHAVSEHVEQAGVHSGDATLVLPPATLDSTTMERVKEIAEKVAEA 900


>gi|262203691|ref|YP_003274899.1| carbamoyl-phosphate synthase L chain ATP--binding protein [Gordonia
           bronchialis DSM 43247]
 gi|262087038|gb|ACY23006.1| Carbamoyl-phosphate synthase L chain ATP- binding protein [Gordonia
           bronchialis DSM 43247]
          Length = 672

 Score = 69.8 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 44/220 (20%), Positives = 81/220 (36%), Gaps = 25/220 (11%)

Query: 58  LHGNFG---EDGLV-QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
           +H  +G   E+    QA+++   + +      A A    K+ +K++++  GVPV     +
Sbjct: 79  IHPGYGFLSENAEFAQAVID-AGLTWIGPPPAAIASMGSKVNAKKLMADAGVPV-----L 132

Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQLLIE 169
                 +      P +IK   GG   G+ +++    +   +  ++           +  E
Sbjct: 133 GDIDPAAVRADDLPLLIKASAGGGGRGMRIVRSLDELDAAISAAAREAESAFGDPTVFCE 192

Query: 170 QYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL----DIY 224
            YV+ G  +   +M DA   V  +   +        K          PA +      D+ 
Sbjct: 193 PYVESGHHIEVQIMADAHGAVWAVGERECSIQRRHQK-----IIEEAPAPLVERIGGDLR 247

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +   A  A   IG  G    +FL D   R  F+LE N 
Sbjct: 248 ERLFAAARTAASTIGYTGAGTVEFLADASGR-FFFLETNT 286


>gi|91217905|ref|ZP_01254859.1| acetyl-CoA carboxylase, biotin carboxylase [Psychroflexus torquis
           ATCC 700755]
 gi|91183998|gb|EAS70387.1| acetyl-CoA carboxylase, biotin carboxylase [Psychroflexus torquis
           ATCC 700755]
          Length = 400

 Score = 69.8 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 37/219 (16%), Positives = 85/219 (38%), Gaps = 17/219 (7%)

Query: 58  LHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS---- 110
           +H  +G   E+      +E  EI +      A  +  DK+ +K+ V +  +P+ P     
Sbjct: 77  IHPGYGFLSENADFAEKVEQNEIAFIGPKSHAIRIMGDKLSAKETVKNYDIPMVPGIDEA 136

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL----DLLQSSSWNHGDQL 166
           +      ++  + I  P +IK   GG   G+ V++++  +       + ++ S      +
Sbjct: 137 VTNTAKAIEIANEIGYPILIKASAGGGGKGMRVVEEEAKLEEQMKRAISEAESAFGNGAV 196

Query: 167 LIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
            IE+YV     +   ++ D   +V  +   +        K      + +    +   + +
Sbjct: 197 FIEKYVSSPRHIEIQILADTHGNVLHLFERECSVQRRHQKVVEEAPSTI----LTPQLRE 252

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           ++ + A    ++    G    +FL D      ++LE+N 
Sbjct: 253 KMGQAAIDVAKSCDYVGAGTVEFLMDEKKN-FYFLEMNT 290


>gi|55380291|ref|YP_138140.1| carbamoyl phosphate synthase L chain [Haloarcula marismortui ATCC
           43049]
 gi|55233016|gb|AAV48434.1| carbamoyl phosphate synthase L chain [Haloarcula marismortui ATCC
           43049]
          Length = 594

 Score = 69.8 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 35/222 (15%), Positives = 76/222 (34%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELL-EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            +H  +G   E+      +E    + +      A     +K +++ V+   GVPV P   
Sbjct: 77  AIHPGYGFLAENAEFAGRVEAADGLTWVGPPSDAMETLGEKTKARTVMQEAGVPVVPGTT 136

Query: 113 VNRFTMDSQHLI----SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS----SSWNHGD 164
                 D    +      P  IK   GG   G+ +++ +  +   L  +     ++   D
Sbjct: 137 DLVSEPDEVRELGAKYGYPIAIKAEGGGGGRGMKIVRSEAEVAEALKSAKREGEAYFGND 196

Query: 165 QLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+Y++    +   V+ D   +     V         L+          P+  +  +
Sbjct: 197 SVYVEKYLEAPKHVEVQVLADEHGN-----VRHLGERDCSLQRRHQKVIEEAPSPALDAE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +  E+   A       G       +FL      + +++E+N 
Sbjct: 252 LRTEIGAAARRGVSEAGYTNAGTVEFLV--EDGEFYFMEVNT 291


>gi|291557307|emb|CBL34424.1| carbamoyl-phosphate synthase large subunit [Eubacterium siraeum
           V10Sc8a]
          Length = 1092

 Score = 69.8 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 48/277 (17%), Positives = 99/277 (35%), Gaps = 34/277 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL+  G+++  +         D D              +  ++   +PD    
Sbjct: 49  SGTQACKALKKLGYEIVLVNSNPATIMTDPDVADITYIEPLNLDRLTQIIEQERPDALLP 108

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G  G +   +     +L+   +      + A     D++  K  +   G+ +  S +
Sbjct: 109 NLGGQSGLNLCSELDKAGVLKKFNVQVIGVQVDAIERGEDRIEFKNAMKDLGIGMPRSEV 168

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     +  P V++P       G  ++     + +   +    +   Q+L+E+
Sbjct: 169 AYTIDEAVKIAEELKYPVVLRPAYTMGGAGGGMVYNVDELKVVCERGLQASLVGQVLVEE 228

Query: 171 YVDG-IELTCGVMGDASL-DVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEV 227
            + G  EL   V+ DA    +T   +   D           +S    P   IP D+ KE+
Sbjct: 229 CIFGWEELELEVVRDADNNKITVCFIENIDPIGVHT----GDSFCSAPMLTIPEDVQKEL 284

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           Q +++   ++I   G     F  +P + ++  +EIN 
Sbjct: 285 QDMSYRIIESIEVIGGCNCQFARNPETGRIVVIEINP 321



 Score = 54.7 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/226 (13%), Positives = 80/226 (35%), Gaps = 14/226 (6%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-ILVN-RFTMDSQHLISPPYV 129
           L+   +    +      L+ D+   + ++    +P+  S + VN    ++  + I  P +
Sbjct: 667 LKKYGVNILGTTPETIDLAEDRDHFRAMMDKLKIPMPESGMAVNVDEALEIANRIGYPVM 726

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P       G+ ++  D+ + + +  +        +LI++++    E     + D    
Sbjct: 727 VRPSYVLGGRGMEIVHDDEMMKVYMSAAVGVTPDRPILIDRFLHHATECEADAISDGK-- 784

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
                VP    +       S +S  +LP+  +       ++         +   G+   +
Sbjct: 785 --NCFVPAVMEHIELAGVHSGDSACILPSMNLTEKQVATIKDYTKKIAVEMNVCGL--MN 840

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
             +      V+ LE N +   T     P ++     +  +L   ++
Sbjct: 841 MQYAIEDDTVYVLEANPRASRT----VPLVSKVCDINMVQLATQII 882


>gi|257464968|ref|ZP_05629339.1| phosphoribosylglycinamide formyltransferase 2 [Actinobacillus minor
           202]
 gi|257450628|gb|EEV24671.1| phosphoribosylglycinamide formyltransferase 2 [Actinobacillus minor
           202]
          Length = 393

 Score = 69.8 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 56/311 (18%), Positives = 107/311 (34%), Gaps = 60/311 (19%)

Query: 19  GKACASALEDAGFKVSQID--------------------VDRSVGLVLAHLKPDLAFNVL 58
           GK     L+  G +V  +D                       ++  ++   KPD     +
Sbjct: 24  GKEVVIELQRLGVEVIAVDRYENAPAQQVAHRAYTISMLDGAALRALVEQEKPDFIVPEV 83

Query: 59  HGNFGEDGLVQAILELLEIPY-THSGILASALSMDKM-RSKQVVSSCGVPVCPSILVNRF 116
                E      ++EL +  Y       A+ L+M++    +      G+   P   V+ F
Sbjct: 84  -----EAIATATLVELEQEGYCVIPTAKATQLTMNREGIRRLAAEELGLKTSPYRFVDNF 138

Query: 117 T--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD--LLQSSSWNHGDQLLIEQYV 172
                +   I  P V+KP+   S  G  +IK  + I       Q      G ++++E ++
Sbjct: 139 EDFQSAIKEIGIPCVVKPIMSSSGHGQSIIKSAEQIQQAWDYSQEGGRAGGGRVIVEGFI 198

Query: 173 ----DGIELTCGVMGDASL--DVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE 226
               +  +LT   +   S    +  I +       Y   +         P  +     ++
Sbjct: 199 QFDYEITQLTVRHIHGTSFLAPIGHIQIDG----DYRESW--------QPQVMSEKAQQK 246

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP---GM-TPVSI-FPEMAAYA 281
            Q +A     A+G RGI   +        ++ + E++ +P   GM T +S    + A +A
Sbjct: 247 AQEVAEKITSALGGRGIFGVELFV--CGDEIIFNEVSPRPHDTGMVTMISQELSQFALHA 304

Query: 282 ----GYSFREL 288
               G    E+
Sbjct: 305 RAILGLPIPEI 315


>gi|153852698|ref|ZP_01994135.1| hypothetical protein DORLON_00117 [Dorea longicatena DSM 13814]
 gi|149754340|gb|EDM64271.1| hypothetical protein DORLON_00117 [Dorea longicatena DSM 13814]
          Length = 444

 Score = 69.8 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 73/221 (33%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  FG   E+     + E   I +        A   +K  ++  + + GVPV P    
Sbjct: 77  AIHPGFGFLSENSKFAELCEQCNITFIGPDSKVIASLGNKQVARNTMMAAGVPVIPGSKE 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS-----SSWNHGD 164
            +   +   +    I  P +IK   GG   G+      +        +      ++    
Sbjct: 137 PVYDAKTGAELAREIGYPVIIKAALGGGGKGMRTAWTPEEFESAFQTAQKETEMAFA-DS 195

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            + IE +V+    +   ++ D   +V  +            K             +  ++
Sbjct: 196 TMYIEHFVENPRHIEFQILADKYGNVIHLGERDCSIQRNHQK----LIEESPSVALSDEL 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            K++   A  A +A G       +FL +      +++E+N 
Sbjct: 252 RKKMGDAAVKAAKAAGYENAGTIEFLLEKSGN-FYFMEMNT 291


>gi|15672651|ref|NP_266825.1| pyruvate carboxylase [Lactococcus lactis subsp. lactis Il1403]
 gi|12723576|gb|AAK04767.1|AE006300_2 pyruvate carboxylase [Lactococcus lactis subsp. lactis Il1403]
          Length = 1137

 Score = 69.8 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 28/167 (16%), Positives = 62/167 (37%), Gaps = 13/167 (7%)

Query: 104 GVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
           G+P     +     ++       P +IK   GG   G+ V   D  +     ++ S   G
Sbjct: 130 GIPGTNGAVDIDGALEFAKTYGYPVMIKAALGGGGRGMRVASNDAEMHDGYARAKSEAIG 189

Query: 164 ----DQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA- 217
                ++ +E+Y++    +   ++GD+  ++              ++  +     + PA 
Sbjct: 190 AFGSGEIYVEKYIENPKHIEVQILGDSHGNII-----HLHERDCSVQRRNQKVIEIAPAV 244

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + LD   E+   A    + +G       +FL      K +++E+N 
Sbjct: 245 GLSLDFRNEICEAAVKLCKNVGYVNAGTVEFLV--KDDKFYFIEVNP 289


>gi|298364400|gb|ADI79336.1| chloroplast biotin carboxylase [Brassica rapa]
          Length = 536

 Score = 69.8 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 80/220 (36%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
           +LH  +G   E+ L   +     I +      +  +  DK  +++ + + GVP  P    
Sbjct: 148 MLHPGYGFLSENALFVEMCREHRINFIGPNPDSIRVMGDKSTARETMKNAGVPTVPGSDG 207

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS----IPLDLLQSSSWNHGDQ 165
            +      +   + I  P +IK   GG   G+ +  +       +     ++++    D 
Sbjct: 208 LLKSTEEGVKLANEIGFPVMIKATAGGGGRGMRLANEPSEFVKLLQAAKSEAAAAFGNDG 267

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+YV +   +   ++ D   +V               K             +  ++ 
Sbjct: 268 VYLEKYVQNPRHIEFQILADKFGNVVHFGERDCSIQRRNQKLL----EEAPSPALTPELR 323

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K +   A  A  +IG  G+   +FL D      +++E+N 
Sbjct: 324 KAMGDAAVAAAASIGYVGVGTVEFLLDER-GSFYFMEMNT 362


>gi|291523189|emb|CBK81482.1| Phosphoribosylamine-glycine ligase [Coprococcus catus GD/7]
          Length = 397

 Score = 69.8 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 36/192 (18%), Positives = 69/192 (35%), Gaps = 23/192 (11%)

Query: 93  KMRSKQVVSSCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150
           K + K   +  G+P     LV   T  +     +  P ++KP  G  +     +K +  +
Sbjct: 114 KSKMKPYYAKAGIPTARYHLVTDLTESLAFVEKVGYPVIVKPDNGVGATTTYKLKSEDEL 173

Query: 151 PLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLN 210
                +     HG Q ++E++V G   +   + ++  +        +     +   +  +
Sbjct: 174 RAFHEEDF---HGVQFIMEEFVPGEIYSYDAIMNSKGEPIFETGNHTPISIMDSVNNHDD 230

Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR---SDFLFDPLS-------RKVFWL 260
           S       I   I  +V+     A ++ G +  SR    +F              KV  L
Sbjct: 231 SVFY----IEKHIADDVRAAGRAAVKSFGVK--SRFVHFEFFRLTEDHDYLGKKGKVIGL 284

Query: 261 EINVQP--GMTP 270
           E+N +P  G TP
Sbjct: 285 EVNYRPSGGFTP 296


>gi|224372451|ref|YP_002606823.1| phosphoribosylglycinamide formyltransferase 2 [Nautilia
           profundicola AmH]
 gi|223588764|gb|ACM92500.1| phosphoribosylglycinamide formyltransferase 2 [Nautilia
           profundicola AmH]
          Length = 389

 Score = 69.8 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 34/241 (14%), Positives = 80/241 (33%), Gaps = 21/241 (8%)

Query: 34  SQIDVD--RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAIL--ELLEIPYTHSGILASAL 89
             ID+     V  V+   KPD     +         + A+   E   I    +    +  
Sbjct: 56  YVIDMKNKEQVLDVIRREKPDYVLPEIEAIN-----IDALFTAEKEGIHVIPNAEAVNKT 110

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVIKKD 147
              K          G+       V+ +    ++   +  P V+KP+   S  G  ++K  
Sbjct: 111 MNRKNIRVFAAEELGLKTSKYEFVSTYEDLKEACDRLGYPVVVKPIMSSSGHGQSIVKSP 170

Query: 148 QSIPLD--LLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205
           + +       +  +    D+L++E+++   +    ++   + +      P     S    
Sbjct: 171 EEVITAWEFAKEDARGSADELIVEEFIH-FDYEITLLTAKNDNEIVFCPPIGHIQSG-GD 228

Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           Y           ++      + + +A    + +G RGI   +        +V++ E++ +
Sbjct: 229 YIFSWQEM----EMSETALNKAKEIARKIVEGLGGRGIFGVELFV--KGDEVYFSEVSPR 282

Query: 266 P 266
           P
Sbjct: 283 P 283


>gi|189023283|ref|YP_001934051.1| Biotin-requiring enzyme [Brucella abortus S19]
 gi|225851563|ref|YP_002731796.1| carbamoyl-phosphate synthase subunit L [Brucella melitensis ATCC
           23457]
 gi|254690333|ref|ZP_05153587.1| carbamoyl-phosphate synthase subunit L [Brucella abortus bv. 6 str.
           870]
 gi|254694822|ref|ZP_05156650.1| carbamoyl-phosphate synthase subunit L [Brucella abortus bv. 3 str.
           Tulya]
 gi|254696450|ref|ZP_05158278.1| carbamoyl-phosphate synthase subunit L [Brucella abortus bv. 2 str.
           86/8/59]
 gi|254709178|ref|ZP_05170989.1| carbamoyl-phosphate synthase subunit L [Brucella pinnipedialis
           B2/94]
 gi|254713398|ref|ZP_05175209.1| carbamoyl-phosphate synthase subunit L [Brucella ceti M644/93/1]
 gi|254716245|ref|ZP_05178056.1| carbamoyl-phosphate synthase subunit L [Brucella ceti M13/05/1]
 gi|254731361|ref|ZP_05189939.1| carbamoyl-phosphate synthase subunit L [Brucella abortus bv. 4 str.
           292]
 gi|256030702|ref|ZP_05444316.1| carbamoyl-phosphate synthase subunit L [Brucella pinnipedialis
           M292/94/1]
 gi|256045806|ref|ZP_05448684.1| carbamoyl-phosphate synthase subunit L [Brucella melitensis bv. 1
           str. Rev.1]
 gi|256158705|ref|ZP_05456584.1| carbamoyl-phosphate synthase subunit L [Brucella ceti M490/95/1]
 gi|256254107|ref|ZP_05459643.1| carbamoyl-phosphate synthase subunit L [Brucella ceti B1/94]
 gi|256258587|ref|ZP_05464123.1| carbamoyl-phosphate synthase subunit L [Brucella abortus bv. 9 str.
           C68]
 gi|256264928|ref|ZP_05467460.1| biotin-requiring enzyme [Brucella melitensis bv. 2 str. 63/9]
 gi|260169605|ref|ZP_05756416.1| carbamoyl-phosphate synthase subunit L [Brucella sp. F5/99]
 gi|260546300|ref|ZP_05822040.1| biotin-requiring enzyme [Brucella abortus NCTC 8038]
 gi|260563099|ref|ZP_05833585.1| biotin-requiring enzyme [Brucella melitensis bv. 1 str. 16M]
 gi|260755874|ref|ZP_05868222.1| carbamoyl-phosphate synthase subunit L ATP-binding protein
           [Brucella abortus bv. 6 str. 870]
 gi|260759097|ref|ZP_05871445.1| carbamoyl-phosphate synthase subunit L ATP-binding protein
           [Brucella abortus bv. 4 str. 292]
 gi|260760823|ref|ZP_05873166.1| carbamoyl-phosphate synthase subunit L ATP-binding protein
           [Brucella abortus bv. 2 str. 86/8/59]
 gi|260884898|ref|ZP_05896512.1| carbamoyl-phosphate synthase subunit L [Brucella abortus bv. 9 str.
           C68]
 gi|261215149|ref|ZP_05929430.1| carbamoyl-phosphate synthase subunit L ATP-binding protein
           [Brucella abortus bv. 3 str. Tulya]
 gi|261218021|ref|ZP_05932302.1| carbamoyl-phosphate synthase subunit L ATP-binding protein
           [Brucella ceti M13/05/1]
 gi|261221248|ref|ZP_05935529.1| carbamoyl-phosphate synthase subunit L [Brucella ceti B1/94]
 gi|261316678|ref|ZP_05955875.1| carbamoyl-phosphate synthase subunit L ATP-binding protein
           [Brucella pinnipedialis B2/94]
 gi|261321130|ref|ZP_05960327.1| carbamoyl-phosphate synthase subunit L ATP-binding protein
           [Brucella ceti M644/93/1]
 gi|261759133|ref|ZP_06002842.1| biotin-requiring enzyme [Brucella sp. F5/99]
 gi|265987748|ref|ZP_06100305.1| carbamoyl-phosphate synthase subunit L ATP-binding protein
           [Brucella pinnipedialis M292/94/1]
 gi|265992223|ref|ZP_06104780.1| carbamoyl-phosphate synthase subunit L [Brucella melitensis bv. 1
           str. Rev.1]
 gi|265997209|ref|ZP_06109766.1| carbamoyl-phosphate synthase subunit L [Brucella ceti M490/95/1]
 gi|189018855|gb|ACD71577.1| Biotin-requiring enzyme [Brucella abortus S19]
 gi|225639928|gb|ACN99841.1| Carbamoyl-phosphate synthase L chain ATP-binding [Brucella
           melitensis ATCC 23457]
 gi|260096407|gb|EEW80283.1| biotin-requiring enzyme [Brucella abortus NCTC 8038]
 gi|260153115|gb|EEW88207.1| biotin-requiring enzyme [Brucella melitensis bv. 1 str. 16M]
 gi|260669415|gb|EEX56355.1| carbamoyl-phosphate synthase subunit L ATP-binding protein
           [Brucella abortus bv. 4 str. 292]
 gi|260671255|gb|EEX58076.1| carbamoyl-phosphate synthase subunit L ATP-binding protein
           [Brucella abortus bv. 2 str. 86/8/59]
 gi|260675982|gb|EEX62803.1| carbamoyl-phosphate synthase subunit L ATP-binding protein
           [Brucella abortus bv. 6 str. 870]
 gi|260874426|gb|EEX81495.1| carbamoyl-phosphate synthase subunit L [Brucella abortus bv. 9 str.
           C68]
 gi|260916756|gb|EEX83617.1| carbamoyl-phosphate synthase subunit L ATP-binding protein
           [Brucella abortus bv. 3 str. Tulya]
 gi|260919832|gb|EEX86485.1| carbamoyl-phosphate synthase subunit L [Brucella ceti B1/94]
 gi|260923110|gb|EEX89678.1| carbamoyl-phosphate synthase subunit L ATP-binding protein
           [Brucella ceti M13/05/1]
 gi|261293820|gb|EEX97316.1| carbamoyl-phosphate synthase subunit L ATP-binding protein
           [Brucella ceti M644/93/1]
 gi|261295901|gb|EEX99397.1| carbamoyl-phosphate synthase subunit L ATP-binding protein
           [Brucella pinnipedialis B2/94]
 gi|261739117|gb|EEY27113.1| biotin-requiring enzyme [Brucella sp. F5/99]
 gi|262551677|gb|EEZ07667.1| carbamoyl-phosphate synthase subunit L [Brucella ceti M490/95/1]
 gi|263003289|gb|EEZ15582.1| carbamoyl-phosphate synthase subunit L [Brucella melitensis bv. 1
           str. Rev.1]
 gi|263095412|gb|EEZ19013.1| biotin-requiring enzyme [Brucella melitensis bv. 2 str. 63/9]
 gi|264659945|gb|EEZ30206.1| carbamoyl-phosphate synthase subunit L ATP-binding protein
           [Brucella pinnipedialis M292/94/1]
          Length = 655

 Score = 69.8 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 39/225 (17%), Positives = 73/225 (32%), Gaps = 22/225 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      +E   + +      A      K  +K ++   GVPV P    
Sbjct: 77  AIHPGYGFLSENPAFVDAVEEAGLIFIGPSAKAIRAMGLKDAAKALMEKAGVPVVPGYHG 136

Query: 114 NRFT----MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
           +             I+ P +IK   GG   G+  +         L     ++ +      
Sbjct: 137 DNQDGAFLKSEADRITYPVLIKARAGGGGKGMRRVDSAADFAAALESARREAEASFGDGA 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           +L+E+Y+     +   V GD   +               L+          PA  +  ++
Sbjct: 197 VLVEKYMAKPRHIEVQVFGDNHGNAV-----HLFERDCSLQRRHQKVIEEAPAPGMTEEM 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR----KVFWLEINV 264
              +   A  A   IG  G    +F+ D        + F++E+N 
Sbjct: 252 RAAMGEAAVKAALTIGYSGAGTVEFIADVSEGLRPDRFFFMEMNT 296


>gi|167761104|ref|ZP_02433231.1| hypothetical protein CLOSCI_03502 [Clostridium scindens ATCC 35704]
 gi|167661338|gb|EDS05468.1| hypothetical protein CLOSCI_03502 [Clostridium scindens ATCC 35704]
          Length = 1075

 Score = 69.8 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 54/312 (17%), Positives = 113/312 (36%), Gaps = 37/312 (11%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL   G+++  +              DV          +  ++A  +PD    
Sbjct: 29  SGTQACKALRKLGYEIVLVNSNPATIMTDPETADVTYIEPLNVERLEQIIAKERPDALLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G  G +   +     ILE   +      + A     D++  K+ + + G+ +  S +
Sbjct: 89  NLGGQSGLNLCSELAKAGILEKYNVQVIGVQVNAIERGEDRIEFKKSMDALGIEMARSEV 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     +  P V++P       G  ++     +     +    +   Q+L+E+
Sbjct: 149 AYTVEEALAIADDLGYPVVLRPAYTMGGAGGGLVYNKDELKTVCARGLQASLVGQVLVEE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQ 228
            + G  EL   ++ DA  ++  +   ++      L   + +S    P   I  +  K +Q
Sbjct: 209 SILGWEELELEIVRDADNNMITVCFIEN---IDPLGVHTGDSFCSAPMLTISEECQKRLQ 265

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
             A+   +++   G +   F  DP+S ++  +EIN +   T  S     +   G+    L
Sbjct: 266 EQAYKIVESVQVIGGTNVQFAHDPVSDRIVVIEINPR---TSRSS-ALASKATGFPIA-L 320

Query: 289 LLWMVEDASCLR 300
           +  M+     L+
Sbjct: 321 VSAMLATGLTLK 332



 Score = 60.9 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/196 (12%), Positives = 73/196 (37%), Gaps = 8/196 (4%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           LE   +    +      L+ D+   ++++    +P+  S +       +     I  P +
Sbjct: 647 LEKNGVKILGTSPSVIDLAEDRDLFREMMEKLEIPMPESGMATTVEEALAIAREIGYPVM 706

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLD 188
           ++P       G+ V+  D+S+   +  +        +LI+++++  +E     + D +  
Sbjct: 707 VRPSYVLGGRGMEVVYDDESMEGYMKAAVGVTPDRPILIDRFLNHALECEADAISDGTHA 766

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                +   +       +S  ++  +    I  +  + ++       + +  +G+   + 
Sbjct: 767 FVPAVMEHIELAGV---HSGDSACIIPSVHISEENVRTIKEYTRKIAEEMHVKGL--MNM 821

Query: 249 LFDPLSRKVFWLEINV 264
            +   + KV+ LE N 
Sbjct: 822 QYAIENGKVYVLEANP 837


>gi|126653051|ref|ZP_01725186.1| acetyl-CoA carboxylase [Bacillus sp. B14905]
 gi|126590152|gb|EAZ84276.1| acetyl-CoA carboxylase [Bacillus sp. B14905]
          Length = 455

 Score = 69.8 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 36/218 (16%), Positives = 82/218 (37%), Gaps = 15/218 (6%)

Query: 58  LHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS---I 111
           +H  +G   E+       E   I +      +  +   K  ++  + + GVP+ P    +
Sbjct: 77  IHPGYGFVSENADFAEACENAGIKFIGPSSDSIKIMGIKDVARTTMEAAGVPLVPGTGIV 136

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQLL 167
                  +    I  P +IK   GG   GI V + ++ +   +     ++++      + 
Sbjct: 137 PDIETGKEWAAKIGYPVIIKATAGGGGKGIRVARTEEDLVKGIDITQKEAAAAFGNPGVY 196

Query: 168 IEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE 226
           +E++++        ++ D   +V  +        + + +   L      PA +  +   E
Sbjct: 197 LEKFIEYFRHCEIQILADGYGNVVHLGERD---CTVQRRMQKLVEEAPSPA-LSSERRAE 252

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +   A  A QA    G    +F++D    K +++E+N 
Sbjct: 253 MGAAAVKAAQACDYEGAGTIEFIYDYQEDKFYFMEMNT 290


>gi|310780278|ref|YP_003968610.1| pyruvate carboxylase [Ilyobacter polytropus DSM 2926]
 gi|309749601|gb|ADO84262.1| pyruvate carboxylase [Ilyobacter polytropus DSM 2926]
          Length = 1145

 Score = 69.8 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 82/224 (36%), Gaps = 25/224 (11%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       +   I +            DK++SK V +  GVP  P   V
Sbjct: 81  AIHPGYGFLSENPEFARKCDEAGIEFIGPTAEMMESLGDKIKSKIVSAKVGVPTIPG--V 138

Query: 114 NRFTMDSQHLI------SPPYVIKPLKGGSSLGIIVIKKDQSIP-----LDLLQSSSWNH 162
           ++     + L+        P ++K   GG   G+ +++    +             ++  
Sbjct: 139 DKPIKSEEDLLSFSETCGYPIMLKAAAGGGGRGMRIVRTHSELIDSYRSAKNEAMKAFGI 198

Query: 163 GDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIP 220
            D + +E+YV+    +   ++GD S ++  +           ++        + PA  + 
Sbjct: 199 DD-IFVEKYVENPKHIEVQILGDKSGNIVHLYE-----RDCSVQRRHQKVVEITPAITLS 252

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +  K +   A    +++  R     +FL D      +++E+N 
Sbjct: 253 EEKRKVICADAIKIAKSVNYRNAGTLEFLVDKDENH-YFIEMNP 295


>gi|298364396|gb|ADI79334.1| chloroplast biotin carboxylase [Brassica napus]
          Length = 536

 Score = 69.8 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 80/220 (36%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
           +LH  +G   E+ L   +     I +      +  +  DK  +++ + + GVP  P    
Sbjct: 148 MLHPGYGFLSENALFVEMCREHRINFIGPNPDSIRVMGDKSTARETMKNAGVPTVPGSDG 207

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS----IPLDLLQSSSWNHGDQ 165
            +      +   + I  P +IK   GG   G+ +  +       +     ++++    D 
Sbjct: 208 LLKSTEEGVKLANEIGFPVMIKATAGGGGRGMRLANEPSEFVKLLQAAKSEAAAAFGNDG 267

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+YV +   +   ++ D   +V               K             +  ++ 
Sbjct: 268 VYLEKYVQNPRHIEFQILADKFGNVVHFGERDCSIQRRNQKLL----EEAPSPALTPELR 323

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K +   A  A  +IG  G+   +FL D      +++E+N 
Sbjct: 324 KAMGDAAVAAAASIGYVGVGTVEFLLDER-GSFYFMEMNT 362


>gi|256060161|ref|ZP_05450343.1| carbamoyl-phosphate synthase subunit L [Brucella neotomae 5K33]
 gi|261324139|ref|ZP_05963336.1| carbamoyl-phosphate synthase subunit L [Brucella neotomae 5K33]
 gi|261300119|gb|EEY03616.1| carbamoyl-phosphate synthase subunit L [Brucella neotomae 5K33]
          Length = 655

 Score = 69.8 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 39/225 (17%), Positives = 73/225 (32%), Gaps = 22/225 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      +E   + +      A      K  +K ++   GVPV P    
Sbjct: 77  AIHPGYGFLSENPAFVDAVEEAGLIFIGPSAKAIRAMGLKDAAKALMEKAGVPVVPGYHG 136

Query: 114 NRFT----MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
           +             I+ P +IK   GG   G+  +         L     ++ +      
Sbjct: 137 DNQDGAFLKSEADRITYPVLIKARAGGGGKGMRRVDSAADFAAALESARREAEASFGDGA 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           +L+E+Y+     +   V GD   +               L+          PA  +  ++
Sbjct: 197 VLVEKYMAKPRHIEVQVFGDNHGNAV-----HLFERDCSLQRRHQKVIEEAPAPGMTEEM 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR----KVFWLEINV 264
              +   A  A   IG  G    +F+ D        + F++E+N 
Sbjct: 252 RAAMGEAAVKAALTIGYSGAGTVEFIADVSEGLRPDRFFFMEMNT 296


>gi|254445945|ref|ZP_05059421.1| carbamoyl-phosphate synthase, large subunit [Verrucomicrobiae
           bacterium DG1235]
 gi|198260253|gb|EDY84561.1| carbamoyl-phosphate synthase, large subunit [Verrucomicrobiae
           bacterium DG1235]
          Length = 1079

 Score = 69.8 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 29/224 (12%), Positives = 87/224 (38%), Gaps = 12/224 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTMDSQHLISPPYV 129
           L+   +    +   +   + D+   KQ++   G+    +  V   +   +   ++  P +
Sbjct: 655 LKANGVNIIGTSPESIDAAEDRELFKQILDETGLKQPDNKTVLNEKEAYEMADVVGFPLL 714

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P       G+ ++     +   + ++   +    +L+++++ D IEL    + D    
Sbjct: 715 LRPSFVLGGRGMFIVHTMDEMKAVIREAFDASPDKPVLLDKFLEDAIELDVDCISDGETS 774

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           +    +   +   Y   +S   +  + P  +  ++ + V++ +F   +A+   G+    F
Sbjct: 775 IIGGMLEHIE---YAGVHSGDAAMVLPPHTLGKEMIETVRQASFRLAKALKVVGLMNIQF 831

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
                  +++ LE+N +   T     P ++   G    ++   +
Sbjct: 832 AI--KDDELYVLEVNPRASRT----VPFVSKAIGVPLAKVAAKI 869



 Score = 66.3 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 50/279 (17%), Positives = 98/279 (35%), Gaps = 36/279 (12%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G++V  +              DV         +V  ++A  +PD    
Sbjct: 29  SGTQACKALKEEGYRVILVNSNPATIMTDPEFADVTYIEPLTIDAVEKIIAKERPDALLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G    +  ++     IL    +    +   A     D+   K+ +   G+ V  S  
Sbjct: 89  TLGGQTALNLSLELEAAGILHEYGVEMIGAKPDAIKKGEDRELFKEAMLKIGLDVAHSRT 148

Query: 113 VNRFTM---DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
           VN        ++ +   P +I+P       G  +    +     +      +   ++L+E
Sbjct: 149 VNSLEEARSAAKEIGGFPLIIRPSFTMGGSGGGIAYNREEFEDIVSNGLELSPVHEVLVE 208

Query: 170 QYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKE 226
           + + G  E    VM D       I   ++    ++       +S  V PA  +    Y+ 
Sbjct: 209 ECLLGWKEYEMEVMRDRKDQCVVICSIEN----FDPMGVHTGDSITVAPAMTLSDREYQA 264

Query: 227 VQRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           ++  +F   + IG   G S   F   P + ++  +E+N 
Sbjct: 265 MRDASFAVIREIGVETGGSNIQFSLCPDTGRMVVIEMNP 303


>gi|254190637|ref|ZP_04897144.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia
           pseudomallei Pasteur 52237]
 gi|157938312|gb|EDO93982.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia
           pseudomallei Pasteur 52237]
          Length = 464

 Score = 69.8 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 48/277 (17%), Positives = 92/277 (33%), Gaps = 38/277 (13%)

Query: 19  GKACASALEDAGFKVSQID----------------VDRSVGLVLAHL----KPDLAFNVL 58
           GK    AL+  G +V  +D                +D +    L  L    +P L    +
Sbjct: 87  GKEVIIALQRLGVEVIAVDRYPNAPGHQVAHRAHVIDMTDPDALRALVDAERPHLVVPEI 146

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKM-RSKQVVSSCGVPVCPSILVNRFT 117
                 D L  A +E   +        A+ L+M++    +      G+P  P      F 
Sbjct: 147 EAI-ATDAL--AAIEAAGVCEVIPTARATQLTMNREGIRRLAAEELGLPTSPYAFAQSFD 203

Query: 118 MDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH--GDQLLIEQYV- 172
             +  +  I  P V+KP+   S  G  V++ +  I      + +       ++++E ++ 
Sbjct: 204 EFAAAVARIGFPCVVKPVMSSSGKGQSVVRSEADIEPAWRYAMAGGRVNHGRVIVEGFIR 263

Query: 173 ---DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
              +  +LT   +  AS                   Y         P  +     +  + 
Sbjct: 264 FDYEITQLTVRAIDPASGQTRTSFCAPIGHLQVAGDY----VESWQPQPMSAKALERSRD 319

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
           +A     A+G RGI   +         V++ E++ +P
Sbjct: 320 IAHRVTSALGGRGIFGVELFVR--GDDVWFSEVSPRP 354


>gi|315926045|ref|ZP_07922246.1| carbamoyl-phosphate synthase, large subunit [Pseudoramibacter
           alactolyticus ATCC 23263]
 gi|315620659|gb|EFV00639.1| carbamoyl-phosphate synthase, large subunit [Pseudoramibacter
           alactolyticus ATCC 23263]
          Length = 1081

 Score = 69.8 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 41/269 (15%), Positives = 96/269 (35%), Gaps = 36/269 (13%)

Query: 22  CASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAI- 71
           CA AL + G++   +         D D S  L    L  +    ++      DG +    
Sbjct: 593 CAWALRELGYEAIIVNNNPETVSTDFDTSDRLYFEPLTAEDVRAIVE-TEKPDGAIVQFG 651

Query: 72  ----------LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTMD 119
                     L+ + +P   +       + D+ R  ++V SCG+P      +      + 
Sbjct: 652 GQTAIKLTQHLDAIAVPILGTDPRYIDAAEDRERFDELVESCGIPRPKGDTVFKTEEAVA 711

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
               +  P +++P        +I+   D  +   +   ++    + +L+++Y+ G E+  
Sbjct: 712 VARRLGYPVLLRPSYVLGGQNMIIAHSDADVEEYMGIITAHEITNPVLVDKYLMGKEVEV 771

Query: 180 GVMGDAS---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAH 235
             + D +   +      V K+  +S        +S  V P + +   +   +        
Sbjct: 772 DAICDGTDYLIPGIMEHVEKAGVHS-------GDSISVYPPQTLSQKVRDTIVDYTGKLA 824

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +A+   G+   +  +  +   V+ +E+N 
Sbjct: 825 RALHVIGL--VNIQYVVMDETVYVIEVNP 851



 Score = 65.9 bits (160), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 54/287 (18%), Positives = 103/287 (35%), Gaps = 35/287 (12%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQIDVDRS---------------------VGLV 45
           G ++E + +   G     AL  AG +V  I+ + +                     V  V
Sbjct: 21  GQAAEFDYA---GTQACKALRQAGLEVVLINSNPATIMTDKAMADEIYIEPLTLDVVKRV 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   KPD   + L G  G +  +Q      LE   +    + +     + D+   K  + 
Sbjct: 78  IQKEKPDGLLSTLGGQTGLNLSMQLAKEGFLEANGVALLGADVTTIDKAEDRQAFKDTMR 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G P  PS +V      +D    I  P +++P       G  +    +++     +   
Sbjct: 138 EIGEPTIPSKVVESLEDALDFAGQIGYPVIVRPAFTLGGTGGGIAAAPEALDHIATRGLR 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   Q+LIE+ + G  E+   VM D   +V  I V   + +   +   + +S  V P +
Sbjct: 198 LSPIHQVLIERDISGWKEIEFEVMRDGKGNV--ITVCSMENFD-PVGIHTGDSIVVAPCQ 254

Query: 219 -IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +    Y+ ++  A      +   G     F  +P +     +E+N 
Sbjct: 255 TLSDKEYQMLRTSALKIISTLKVEGGCNCQFALNPDNFNYAVIEVNP 301


>gi|312135015|ref|YP_004002353.1| phosphoribosylaminoimidazole carboxylase, atpase subunit
           [Caldicellulosiruptor owensensis OL]
 gi|311775066|gb|ADQ04553.1| phosphoribosylaminoimidazole carboxylase, ATPase subunit
           [Caldicellulosiruptor owensensis OL]
          Length = 403

 Score = 69.8 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 41/197 (20%), Positives = 73/197 (37%), Gaps = 16/197 (8%)

Query: 73  ELLEIPY-THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIK 131
           +L +  Y  +       +  DK + KQ+  +  +PV     V             P V K
Sbjct: 108 DLYDKGYHIYPSPYCLEIIQDKFKQKQMFKNANLPVPRFEKVTHLDASFFEKFGFPCVQK 167

Query: 132 PLKGG-SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDV 189
             KGG    G++VIK  + +   L   S         +E+ VD   EL   V  +   DV
Sbjct: 168 ASKGGYDGRGVVVIKDKEDLNKVLQTES--------FVEELVDIKKELAVMVARNKRGDV 219

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
               V +  F     + +++    V PA+I   I +  + +A    +A+   G+   +  
Sbjct: 220 KSYPVVEMVF----EQSANILDFLVAPARIDEKIAQRAREVAIKVVEALDGVGVFGVELF 275

Query: 250 FDPLSRKVFWLEINVQP 266
                 ++   E+  +P
Sbjct: 276 LTK-DDEILINEVAPRP 291


>gi|166711938|ref|ZP_02243145.1| carbamoyl phosphate synthase large subunit [Xanthomonas oryzae pv.
           oryzicola BLS256]
          Length = 1080

 Score = 69.8 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 47/278 (16%), Positives = 102/278 (36%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL D G++V  +         D +            ++V  ++A  KPD    
Sbjct: 29  SGAQACKALRDEGYRVVLVNSNPATIMTDPNMADAVYIEPINWQTVEKIIAKEKPDALLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      +LE   +    +   A  ++ D+   +  +   G+    + +
Sbjct: 89  TMGGQTALNCALDLADHGVLEKYNVELIGAKREAIRMAEDRELFRVAMGEIGLDCPKAAV 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     ++ Q  +  P +I+P       G  +    + +   + +    +   ++L+E+
Sbjct: 149 AHTLEEALEIQTRVGYPTIIRPSFTLGGSGGGIAYNREELIEIVGRGLELSPTTEVLVEE 208

Query: 171 YVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            V G  E    V+ D + + +   A+   D           +S  V PA+ +    Y+ +
Sbjct: 209 SVLGWKEFEMEVVRDTADNCIIVCAIENLDPMGVHT----GDSITVAPAQTLTDKEYQRL 264

Query: 228 QRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F   P + +V  +E+N 
Sbjct: 265 RDASIAVLRKIGVDTGGSNVQFGISPTTGRVVVIEMNP 302



 Score = 64.0 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/223 (15%), Positives = 88/223 (39%), Gaps = 12/223 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           LE   +P   +   +  L+ D+ R +Q+V + G+   P+ +       +     I  P V
Sbjct: 654 LEANGVPVIGTSPDSIDLAEDRERFQQLVDTLGLKQPPNRIARNAEEALVLAREIGYPLV 713

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLD 188
           ++P        + ++  +  +   +  +   ++   +L+++++D  +E+   ++ D   +
Sbjct: 714 VRPSYVLGGRAMEIVYGESDLARYVRDAVKVSNDSPVLLDRFLDNAVEVDVDIIADKDGN 773

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           V    V   +       +S  +S  + P  +      E++R   +  + +   G+  + F
Sbjct: 774 VLIGGV--MEHIEEAGVHSGDSSCSLPPYSLSPQTQAELRRQVVMLAEGLNVVGLMNTQF 831

Query: 249 LF---DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
                +     V+ LE+N +   T     P ++   G    ++
Sbjct: 832 AVQVNEAGDDIVYLLEVNPRASRT----VPFVSKAIGMPLAKI 870


>gi|90416146|ref|ZP_01224078.1| carbamoyl-phosphate synthase, large subunit [marine gamma
           proteobacterium HTCC2207]
 gi|90331871|gb|EAS47085.1| carbamoyl-phosphate synthase, large subunit [marine gamma
           proteobacterium HTCC2207]
          Length = 1072

 Score = 69.8 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 50/278 (17%), Positives = 97/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + GF+V  +              D         R+V  ++A  KPD    
Sbjct: 29  SGAQACKALREEGFRVILVNSNPATIMTDPAMADATYIEPVEWRTVEHIIAQEKPDALLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      +LE   +    +   A   + D+ R  + + + G+    S +
Sbjct: 89  TMGGQTALNCALDLAKHGVLEKYGVEMIGANADAIDKAEDRERFDKAMKAIGLDTPNSGI 148

Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +      Q       P VI+P       G  +    +       +    +  ++LLI++
Sbjct: 149 AHSMEEAIQVSDRFGFPCVIRPSFTMGGSGGGIAYNREEFEEICRRGLDLSPTNELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D   +   I   ++ D           +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEFEMEVVRDRKDNCIIICAIENLDPMGIHT----GDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P   ++  +E+N 
Sbjct: 265 RNASIKVLREIGVETGGSNVQFAVNPEDGRLIVIEMNP 302



 Score = 64.0 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 28/196 (14%), Positives = 72/196 (36%), Gaps = 8/196 (4%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYV 129
           LE   +P   +   A   + D+ R +Q++   G+    +          +    I  P V
Sbjct: 653 LEAAGVPIVGTTPDAIDRAEDRERFQQMIQKLGLLQPQNATARSADQAVELAKEIGYPLV 712

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLD 188
           ++P        + ++ K+  +   +  +   +    +L++ ++   IE+    + D    
Sbjct: 713 VRPSYVLGGRAMEIVYKEDELRHYMKTAVQVSDDSPVLLDFFLPNAIEMDVDAVSDGEQV 772

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           V    +   +       +S  ++  + P  +  DI  E++ +       +G RG+   + 
Sbjct: 773 VIGAIMQHIEQAGI---HSGDSACSLPPYSLGEDIQNEMREVCKKMALELGVRGL--MNV 827

Query: 249 LFDPLSRKVFWLEINV 264
                   ++ +E+N 
Sbjct: 828 QLALQDGLIYVIEVNP 843


>gi|241759155|ref|ZP_04757263.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Neisseria
           flavescens SK114]
 gi|241320574|gb|EER56851.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Neisseria
           flavescens SK114]
          Length = 453

 Score = 69.8 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 39/217 (17%), Positives = 78/217 (35%), Gaps = 18/217 (8%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---SILVNR 115
           +G   E+      +E     +         L  DK+ +K  +   GVP  P     L + 
Sbjct: 82  YGFLAENANFAEQVEQSGFVFIGPKADTIRLMGDKVSAKHAMIEAGVPCVPGSEGALPDD 141

Query: 116 FT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGDQLLIE 169
               +     +  P +IK   GG   G+ V++K + +   +     ++ +      + +E
Sbjct: 142 GEEILKIADKVGYPVIIKASGGGGGRGMRVVEKKEDLLQSVEMTKAEAGAAFGNPMVYME 201

Query: 170 QYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
           +Y+     +   V+ D   +   +A           K          PA  I  +   ++
Sbjct: 202 RYLQRPRHVEIQVIADEYGNAIYLAERDCSMQRRHQK-----VIEEAPAPFITEEERAKI 256

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +    A + IG RG    +FL+     + F++E+N 
Sbjct: 257 GKACADACKRIGYRGAGTFEFLY--EDGEFFFIEMNT 291


>gi|220920922|ref|YP_002496223.1| acetyl-CoA carboxylase, biotin carboxylase [Methylobacterium
           nodulans ORS 2060]
 gi|219945528|gb|ACL55920.1| acetyl-CoA carboxylase, biotin carboxylase [Methylobacterium
           nodulans ORS 2060]
          Length = 450

 Score = 69.8 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 38/199 (19%), Positives = 75/199 (37%), Gaps = 17/199 (8%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIK 131
            + +      A  L  DK+ +K+ +   GVP  P     +  +         I  P ++K
Sbjct: 99  GLIFVGPPASAIRLMGDKVAAKRAMREAGVPCVPGGDGPLPDDAACRALAEDIGYPVIVK 158

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQLLIEQYVDG-IELTCGVMGDAS 186
              GG   G+ V++  Q +   +     ++        + +E+++     +   V+ DA 
Sbjct: 159 AAGGGGGRGMRVVRAAQDLAEAVATTREEAGRAFGNPTVYMEKFLQAPRHVEIQVLADAH 218

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISR 245
            D   +           L+          PA  +P D+   V      A + IG RG   
Sbjct: 219 GDAVWLGE-----RDCSLQRRHQKVVEEAPAPGVPRDLIAAVGARCAEACRRIGYRGAGT 273

Query: 246 SDFLFDPLSRKVFWLEINV 264
            +FL++    ++F++E+N 
Sbjct: 274 FEFLYEA--GELFFIEMNT 290


>gi|225570405|ref|ZP_03779430.1| hypothetical protein CLOHYLEM_06505 [Clostridium hylemonae DSM
           15053]
 gi|225160776|gb|EEG73395.1| hypothetical protein CLOHYLEM_06505 [Clostridium hylemonae DSM
           15053]
          Length = 1065

 Score = 69.8 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 35/225 (15%), Positives = 82/225 (36%), Gaps = 13/225 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTMDSQHLISPPYV 129
           L  + +P   +       + D+ R  +++ +C +P      +       +  + +  P +
Sbjct: 647 LMKMGVPILGTSAENVDAAEDRERFDEILEACRIPRPTGGTVYTAEEAKEVANRLGYPVL 706

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           ++P       G+ +   D  I   +   +       +L+++Y+ G E+    + D     
Sbjct: 707 VRPSYVLGGQGMQIAINDHDIDEFIGIINRIAQDHPILVDKYLQGKEIEVDAVCDGE--- 763

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
            +I +P    +       S +S  V PA+ I     K ++       Q++   G+    F
Sbjct: 764 -DILIPGIMEHIERAGIHSGDSISVYPAQSISEKTKKTIEDYTRKLAQSLHVIGLINIQF 822

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +       V+ +E+N +   T     P ++   G     L   ++
Sbjct: 823 IV--CGEDVYVIEVNPRSSRT----VPYISKVTGIPIVPLATKVI 861



 Score = 47.8 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 41/286 (14%), Positives = 94/286 (32%), Gaps = 33/286 (11%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQID-------VDRSVG--------------LV 45
           G ++E + +   G     +L++ G +V  ++        D+ +                +
Sbjct: 21  GQAAEFDYA---GTQACRSLKEEGLEVVLLNSNPATIMTDKDIADRVYIEPLTVEVVEQL 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   KPD     L G    +  ++      L    +    +       + D++  K  + 
Sbjct: 78  ILKEKPDSVLPTLGGQAALNLAMELDENGFLRRNNVRLIGTTTETIKKAEDRLEFKTTME 137

Query: 102 SCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G P   S++V      +     I  P V++P       G  +    + +   L     
Sbjct: 138 KIGEPCAASLVVEHVDDGVRFAEKIGYPVVLRPAYTLGGSGGGIAGDREQLVEILENGLR 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   Q+L+E+ + G  E+   VM D + +   I V   +       ++  +        
Sbjct: 198 LSRVGQVLVERCIAGWKEIEYEVMRDGNGN--CITVCNMENIDPVGVHTGDSIVVAPSQT 255

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +    Y+ ++  A      +   G     +   P + +   +E+N 
Sbjct: 256 LGDKEYQMLRTSALNIISELNITGGCNVQYALHPDTFEYCVIEVNP 301


>gi|76811548|ref|YP_332759.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia
           pseudomallei 1710b]
 gi|76581001|gb|ABA50476.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia
           pseudomallei 1710b]
          Length = 464

 Score = 69.8 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 48/277 (17%), Positives = 92/277 (33%), Gaps = 38/277 (13%)

Query: 19  GKACASALEDAGFKVSQID----------------VDRSVGLVLAHL----KPDLAFNVL 58
           GK    AL+  G +V  +D                +D +    L  L    +P L    +
Sbjct: 87  GKEVIIALQRLGVEVIAVDRYPNAPGHQVAHRAHVIDMTDPDALRALVDAERPHLVVPEI 146

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKM-RSKQVVSSCGVPVCPSILVNRFT 117
                 D L  A +E   +        A+ L+M++    +      G+P  P      F 
Sbjct: 147 EAI-ATDAL--AAIEAAGVCEVIPTARATQLTMNREGIRRLAAEELGLPTSPYAFAQSFD 203

Query: 118 MDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH--GDQLLIEQYV- 172
             +  +  I  P V+KP+   S  G  V++ +  I      + +       ++++E ++ 
Sbjct: 204 EFAAAVARIGFPCVVKPVMSSSGKGQSVVRSEADIEPAWRYAMAGGRVNHGRVIVEGFIR 263

Query: 173 ---DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
              +  +LT   +  AS                   Y         P  +     +  + 
Sbjct: 264 FDYEITQLTVRAIDPASGQTRTSFCAPIGHLQVAGDY----VESWQPQPMSAKALERSRD 319

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
           +A     A+G RGI   +         V++ E++ +P
Sbjct: 320 IAHRVTSALGGRGIFGVELFVR--GDDVWFSEVSPRP 354


>gi|114330475|ref|YP_746697.1| carbamoyl-phosphate synthase, large subunit [Nitrosomonas eutropha
           C91]
 gi|114307489|gb|ABI58732.1| carbamoyl-phosphate synthase large subunit [Nitrosomonas eutropha
           C91]
          Length = 1065

 Score = 69.8 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 52/278 (18%), Positives = 101/278 (36%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  I         D +            + V  V+   +PD    
Sbjct: 29  SGVQACRALREEGYRVILINSNPATIMTDPELTDATYIEPITWQVVEKVIEIERPDALLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      +LE   +    +   A  ++ D+ + KQ ++  G+    S +
Sbjct: 89  TMGGQTALNCALDLVRHGVLEKYGVVLIGASREAIDMAEDREKFKQAMTRIGLQSARSAM 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     M +Q +I  P +I+P       G  +    +       +    +   +LLIE+
Sbjct: 149 AHSMEEAMRAQAVIGYPVIIRPSFTLGGSGGGIAYNREEFVEICERGLEASPTRELLIEE 208

Query: 171 YVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            V G  E    V+ D   + +   A+   D           +S  V PA+ +    Y+ +
Sbjct: 209 SVIGWKEFEMEVIRDKQDNCIIVCAIENVDPMGVHT----GDSITVAPAQTLTDKEYQRM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P +  +  +E+N 
Sbjct: 265 RDASIAVLREIGVETGGSNVQFAINPENGNMLVIEMNP 302



 Score = 68.6 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 33/203 (16%), Positives = 73/203 (35%), Gaps = 22/203 (10%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           LE  E+P   +       + D+ R + ++   G+   P+         + +   I  P V
Sbjct: 648 LEENEVPIIGTSPDMIDCAEDRERFQAMLQGLGLKQPPNFTARTPETALAAADNIGYPLV 707

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL--------IEQYVDGIELTCGV 181
           ++P        + ++ + + +   + ++   ++   +L        IE  VD I     V
Sbjct: 708 VRPSYVLGGRAMEIVHEARDLERYMQEAVKVSNDSPVLLDHYLNNAIEVDVDAIFDGETV 767

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241
           +    ++  E A   S            ++  + P  +   +  E++R      +A+  R
Sbjct: 768 LVGGIMEHIEQAGVHSG----------DSACSLPPFSLSTSLQDELRRQTGAMARALNVR 817

Query: 242 GISRSDFLFDPLSRKVFWLEINV 264
           G+    F        V+ LE+N 
Sbjct: 818 GLMNIQFAI--QDNVVYVLEVNP 838


>gi|56416930|ref|YP_154004.1| propionyl-CoA carboxylase alpha chain precursor [Anaplasma
           marginale str. St. Maries]
 gi|56388162|gb|AAV86749.1| propionyl-CoA carboxylase alpha chain precursor [Anaplasma
           marginale str. St. Maries]
          Length = 662

 Score = 69.8 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 42/250 (16%), Positives = 87/250 (34%), Gaps = 22/250 (8%)

Query: 32  KVSQIDVDRSVGLVLAHLKP-----DLAFNVLHGNFG---EDGLVQAILELLEIPYTHSG 83
           +   I    +    L   K      D   + +H  +G   E+      L    + +    
Sbjct: 50  EAVYIGPGPASQSYLDICKICAVAKDTGVDAVHPGYGFLAENAEFPDRLSECGVGFIGPA 109

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSIL-VNRFTMDSQHL---ISPPYVIKPLKGGSSL 139
             +  +  DK+ SK+V    GV V P  + V     D++ +   I  P +IK   GG   
Sbjct: 110 PSSMRMMSDKVVSKRVAQDAGVAVVPGYMGVVESPADAKKIAESIGFPVMIKAAAGGGGK 169

Query: 140 GIIVIKKDQSIPLDLL----QSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAV 194
           G+ V+K  + +    +    ++S      ++ IE+YV+    +   ++ D   +V  +  
Sbjct: 170 GMRVVKSAKEMEQAFVSATNEASKSFSDGRIFIEKYVEFPRHIEVQIVADKHGNVVCLGE 229

Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
            +        K             +     + +        + +    +   +F+ D   
Sbjct: 230 RECSIQRNNQK----VIEETPSPFLDKKTRQNMYDQCVSLAKRVNYFSVGTVEFVIDAEK 285

Query: 255 RKVFWLEINV 264
           R  ++LE+N 
Sbjct: 286 R-FYFLEMNT 294


>gi|269856951|gb|ACZ51500.1| DUR1p [Cryptococcus heveanensis]
          Length = 1237

 Score = 69.8 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 31/237 (13%), Positives = 66/237 (27%), Gaps = 17/237 (7%)

Query: 39  DRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQ 98
              V  +             +G   E+      +E   + +             K  +++
Sbjct: 70  QEDVLEIAKKSGAHAVIPG-YGFLSENDGFAEKVEAAGLTWVGPSSEVIRKFGLKHTARE 128

Query: 99  VVSSCGVPVCPSILVNRFTMDS---QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
           +     VPV     + +   D+      I  P ++K   GG  +G+ +      I     
Sbjct: 129 LAVEAKVPVISGTDLLKSAQDALEAAEKIGYPVMLKATAGGGGMGLQICWDSSEIEAAFE 188

Query: 156 QSSSWN----HGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLN 210
              +          + +E+YV     +   V G+           +        K     
Sbjct: 189 SVHARGATLFSNTSMFMEKYVAKSRHVEVQVFGNGLGQAVHFGERECSIQRRHQK----- 243

Query: 211 STHVLPAKI---PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
                P+        + + +   A     ++G       +FL D      ++LE+N 
Sbjct: 244 VVEECPSPFVHRHPGMRERITSCAVSLASSVGYGSAGTVEFLVDDTDGAFYFLEMNT 300


>gi|269137952|ref|YP_003294652.1| carbamoylphosphate synthase large subunit [Edwardsiella tarda
           EIB202]
 gi|267983612|gb|ACY83441.1| carbamoylphosphate synthase large subunit [Edwardsiella tarda
           EIB202]
 gi|304558000|gb|ADM40664.1| Carbamoyl-phosphate synthase large chain [Edwardsiella tarda
           FL6-60]
          Length = 1073

 Score = 69.8 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 45/278 (16%), Positives = 98/278 (35%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D +              V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +    Q +L    +    +   A   + D+ R  Q +   G+    S +
Sbjct: 89  TMGGQTALNCALELERQGVLAEFGVTMIGATADAIDKAEDRRRFDQAMKKIGLDTARSGI 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +    ++     +  P +I+P       G  +    +       +    +  ++LLI++
Sbjct: 149 AHSLEESLAVAEQVGFPCIIRPSFTMGGTGGGIAYNREEFEEICARGLDLSPTNELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + + +   A+   D           +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCAIENIDPMGIHT----GDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RNASMAVLREIGVETGGSNVQFAVNPKNGRLIVIEMNP 302



 Score = 66.3 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 34/197 (17%), Positives = 76/197 (38%), Gaps = 10/197 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ--HLISPPYV 129
           LE   +P   +   A   + D+ R +Q V+  G+    +  V       +    I  P V
Sbjct: 654 LEAAGVPVIGTSPDAIDRAEDRERFQQAVNRLGLKQPANATVTAIEQAVEKGAQIGYPLV 713

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  +  +      + S ++   +L++ ++ D +E+    + D    
Sbjct: 714 VRPSYVLGGRAMEIVYDESDLRRYFQTAVSVSNDAPVLLDHFLDDAVEVDVDAICDGERV 773

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           +    +   +    +    S +S   LPA  +  +I  E++R A      +  RG+    
Sbjct: 774 LIGGIMEHIE----QAGVHSGDSACSLPAYTLSAEIQDELRRQAEKLAMELCVRGLMNVQ 829

Query: 248 FLFDPLSRKVFWLEINV 264
           F       +V+ +E+N 
Sbjct: 830 FAV--KDNQVYLIEVNP 844


>gi|300771045|ref|ZP_07080922.1| carbamoyl-phosphate synthase, large subunit [Sphingobacterium
           spiritivorum ATCC 33861]
 gi|300762318|gb|EFK59137.1| carbamoyl-phosphate synthase, large subunit [Sphingobacterium
           spiritivorum ATCC 33861]
          Length = 938

 Score = 69.8 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 28/218 (12%), Positives = 78/218 (35%), Gaps = 14/218 (6%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYV 129
           LE + +    +      L+ D+ R   ++ S  +P     +           + +  P +
Sbjct: 651 LEAIGVRIIGTSFQDMDLAEDRGRFSDLLKSLDIPYPKYGVAESAEEAIVVANQVGYPVL 710

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD--GIELTCGVMGDASL 187
           ++P       G+ ++  D+ +   ++       G+++LI+ ++D      +  +     +
Sbjct: 711 VRPSYVLGGQGMSIVINDEDLEKAVVNLLKNLPGNRVLIDHFLDRAEEAESDSICDGEDV 770

Query: 188 DVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
            +  +         +    S  +S  + P  +  ++  +++  +    +A+  +G+    
Sbjct: 771 HIIGMMEHIEPAGIH----SGDSSAVLPPFSLSQNVQDKMEEYSKKLAKALNVKGLLNIQ 826

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285
           F        VF +E N +   T     P +A      +
Sbjct: 827 FAV--KDENVFVIEANPRASRT----VPFIAKAYDVPY 858



 Score = 63.6 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 50/252 (19%), Positives = 97/252 (38%), Gaps = 34/252 (13%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG   A +L++ G +VS I+ +                      S+  VL     D    
Sbjct: 29  SGSQAALSLKEEGIEVSIINSNPATIMTDKVVADNVYLLPLTCESIEEVLQKHNIDAVLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +    + I E  +I      + A   + ++   +Q++   GV V  S +
Sbjct: 89  TMGGQTALNLCIEASERGIWEKYDIKVIGVDVAAIEKTENREAFRQLMVDIGVGVAKSKI 148

Query: 113 VNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            N F    ++   I  P VI+P    +  G   + K +     L +    +   ++L+EQ
Sbjct: 149 ANSFLEGKEAAQEIGYPLVIRPSYTLAGTGGGFVHKKEEFDAALNRGLHASPTHEVLVEQ 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            V G  E    ++ DA+ +V  I   ++    ++       +S  V PA  +    Y+++
Sbjct: 209 AVLGWKEFELELLRDANDNVIIICTIEN----FDPMGIHTGDSITVAPAMTLSDRCYQDM 264

Query: 228 QRLAFLAHQAIG 239
           +  A    ++IG
Sbjct: 265 RNQAIKMMRSIG 276


>gi|291298309|ref|YP_003509587.1| carbamoyl-phosphate synthase L chain ATP- binding protein
           [Stackebrandtia nassauensis DSM 44728]
 gi|290567529|gb|ADD40494.1| Carbamoyl-phosphate synthase L chain ATP- binding protein
           [Stackebrandtia nassauensis DSM 44728]
          Length = 582

 Score = 69.8 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 34/222 (15%), Positives = 74/222 (33%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLV-QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            +H  +G   E+    QA+++   + +      +     DK+ ++ + +  G P+ P   
Sbjct: 76  AVHPGYGFLSENADFAQAVID-AGLTWIGPTPRSIRDLGDKVTARHIAARAGAPLVPGTS 134

Query: 111 --ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSWNHGD 164
             +      +        P  IK   GG   G+ V +    I       + ++ +     
Sbjct: 135 EPVSGPDEVIAFADEHGLPIAIKAAFGGGGRGLKVARDRDEIANLYDSAVREAVASFGRG 194

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
           +  +E+Y+D    +   V+ D    V  +           L+          PA  +  +
Sbjct: 195 ECFVERYLDKPRHVEAQVLADTHGQVIVVGT-----RDCSLQRRHQKLVEEAPAPFLTDE 249

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             + +   A    +     G    +FL       + +LE+N 
Sbjct: 250 QRQRIHDSAKAICREAEYHGAGTVEFLV-GADGTISFLEVNT 290


>gi|67458811|ref|YP_246435.1| Acetyl-CoA carboxylase, biotin carboxylase [Rickettsia felis
           URRWXCal2]
 gi|67004344|gb|AAY61270.1| Acetyl-CoA carboxylase, biotin carboxylase [Rickettsia felis
           URRWXCal2]
          Length = 665

 Score = 69.8 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 82/221 (37%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+ +   IL+   +              DK+ +K++    GV   P  + 
Sbjct: 81  AVHPGYGFLSENPIFANILKREGVVLIGPSAGTIKKMGDKIEAKKIAIEAGVSTVPGYMG 140

Query: 114 N----RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD-----LLQSSSWNHGD 164
                +  +D    I  P ++K   GG   G+ V+     +        L  ++S++  D
Sbjct: 141 TINDVKQAVDIAKEIGFPVIVKAAAGGGGRGMRVVNNPAEMANAFESAKLEAANSFS-DD 199

Query: 165 QLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           +L IE+ +     +   ++ D   +   +   +     +  K           + I  DI
Sbjct: 200 RLFIEKLIQTPRHIEIQLIADQYGNSVCLGERECSIQRHHQK----VIEEAPSSFITEDI 255

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +E+ R      Q +G       +F+ D  ++  ++LE+N 
Sbjct: 256 RQEMYRQVISLSQKVGYYSAGTVEFIVD-SNKNFYFLEMNT 295


>gi|34499257|ref|NP_903472.1| carbamoyl-phosphate synthase large chain [Chromobacterium violaceum
           ATCC 12472]
 gi|34105108|gb|AAQ61464.1| carbamoyl-phosphate synthase large chain [Chromobacterium violaceum
           ATCC 12472]
          Length = 1069

 Score = 69.8 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 35/229 (15%), Positives = 83/229 (36%), Gaps = 19/229 (8%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           LE   +P   +       + D+ R +++++  G+   P+         M     I  P V
Sbjct: 648 LEANGVPIIGTTPDMIDAAEDRERFQKLLNELGLKQPPNRTARAPAEAMKLADEIGYPLV 707

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++ +   +   + ++   ++   +L+++++ D IE+    + D    
Sbjct: 708 VRPSYVLGGRAMEIVHEPADLERYMREAVKVSNDSPVLLDRFLNDAIEVDVDCVSDGEQV 767

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           V    +   +       +S  ++  + P  +   +  E++R      +A+   G+    F
Sbjct: 768 VIGGIMQHVEQAGV---HSGDSACSLPPYSLFPALQDEIRRQTEAMARALNVVGLMNVQF 824

Query: 249 LFDPLSRKVFWLEIN-----VQPGM----TPVSIFPEMAAY-AGYSFRE 287
                   ++ LE+N       P      T   +    A   AG S  E
Sbjct: 825 AI--QGDTIYVLEVNPRASRTVP-FVSKVTSAPLAKIAARAMAGISLAE 870



 Score = 65.9 bits (160), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 51/278 (18%), Positives = 105/278 (37%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +         D D              V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYKVILVNSNPATIMTDPDMADVTYIEPISWPVVEKIIAKERPDAILP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      +LE  ++    +   A   + D+ R K+ ++  G+    S +
Sbjct: 89  TMGGQTALNCALDLARNGVLEKYKVELIGATEDAIDKAEDRGRFKEAMAKIGLSCPLSFV 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +    ++++Q  +  P +I+P       G  +    +       +    +   +LLIEQ
Sbjct: 149 CHTMEESLEAQAKVGFPTLIRPSFTMGGSGGGIAYNKEEFLAICERGFEASPTHELLIEQ 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            V G  E    V+ D + +   I   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SVLGWKEYEMEVVRDKNDNCIIICSIEN----FDPMGVHTGDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RNASLAVLREIGVDTGGSNVQFATNPATGEMIVIEMNP 302


>gi|78355380|ref|YP_386829.1| carbamoyl-phosphate synthase large subunit [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
 gi|78217785|gb|ABB37134.1| carbamoyl-phosphate synthase large subunit [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
          Length = 1087

 Score = 69.8 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 46/278 (16%), Positives = 98/278 (35%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G++V  +         D               +V  ++   +P     
Sbjct: 29  SGTQAVKALKEEGYEVVLVNSNPATIMTDPGLADRTYIEPIEPETVAAIIRKERPCALLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G  G +  +      +LE   +    +       +  +   +Q +++ G+ V  S +
Sbjct: 89  TLGGQTGLNTALAVAETGVLEECGVELIGATRDVINKAESRDLFRQAMANIGLKVPASGI 148

Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                   +    +  P +++P       G  +    + +     Q  + +   ++L+EQ
Sbjct: 149 ARTMDDVRRLGAEMPFPLIVRPAFTLGGSGGGIAYNMEDLEEIASQGLAASMQSEILVEQ 208

Query: 171 YVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            V G  E    VM D + + V   ++   D           +S  V PA+ +    Y+ +
Sbjct: 209 SVLGWKEYEMEVMRDRNDNCVIVCSIENIDPMGVHT----GDSITVAPAQTLTDVEYQMM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P +  +  +E+N 
Sbjct: 265 RDASIAIMREIGVETGGSNVQFGINPENGDMVVIEMNP 302



 Score = 56.7 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 77/221 (34%), Gaps = 14/221 (6%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           L    +P   +   +   + D+ R + ++    +    +  V      + +   I  P V
Sbjct: 658 LMRAGVPILGTHPDSIDRAEDRERFQALIQKLDLLQPANDTVMSLEEALKASETIGYPVV 717

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLD 188
           ++P        + V+   + +      S        +LI+++++   E+    + D    
Sbjct: 718 VRPSYVLGGRAMEVVYDAEQLRTYFANSVGKAPEHPILIDKFLENATEVDVDALSDGCDT 777

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
                +   +    E    S +S  V+P   +P DI +E++R        +   G+    
Sbjct: 778 YVAGIMEHIE----EAGIHSGDSACVIPPHTLPADIVEEIRRQTVALATELKVVGLMNIQ 833

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           F       +VF LE+N +   T     P ++   G     L
Sbjct: 834 FAI--KDGRVFILEVNPRASRTA----PFVSKATGVPLPRL 868


>gi|332797788|ref|YP_004459288.1| biotin carboxylase subunit of acetyl-CoA carboxylase [Acidianus
           hospitalis W1]
 gi|332695523|gb|AEE94990.1| biotin carboxylase subunit of acetyl-CoA carboxylase [Acidianus
           hospitalis W1]
          Length = 513

 Score = 69.8 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 36/219 (16%), Positives = 75/219 (34%), Gaps = 16/219 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+    A +E   + +            DK+  K+V    GVP+ P    
Sbjct: 82  AVHPGYGFLSENADFAAAVEKAGMTFIGPSSDVMNKIKDKLDGKRVAKMAGVPIAPGSDG 141

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
            +      +     I  P ++K   GG  +GI  +     +     ++    +       
Sbjct: 142 PVSSLDEALKIAEKIGYPIMVKAASGGGGVGITRVDNPDQLVEVWERNKRLAYQAFGKAD 201

Query: 166 LLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           L IE+Y V+   +   ++GD   D       +        K             + ++  
Sbjct: 202 LYIEKYAVNPRHIEFQLIGDKYGDYVVAWERECTIQRRNQK----LIEEAPSPALKMEER 257

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
           +++        Q I    +   +  F  ++R+ ++LE+N
Sbjct: 258 EKMFEPIMKFGQIIHYFTMGTFETAFSDVTREFYFLELN 296


>gi|227327934|ref|ZP_03831958.1| acetyl-CoA carboxylase biotin carboxylase subunit [Pectobacterium
           carotovorum subsp. carotovorum WPP14]
          Length = 447

 Score = 69.8 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 39/222 (17%), Positives = 80/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         L  DK+ +   +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAEQVERSGFIFIGPRAETIRLMGDKVSAITAMKKAGVPTVPGSDG 136

Query: 112 -LVNRFTMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
            L      +  H   I  P +IK   GG   G+ V++ D+ +   +     ++ +  + D
Sbjct: 137 PLDGDMDANRAHAKRIGYPVIIKASGGGGGRGMRVVRSDKELEQSINMTRAEAKAAFNND 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+Y++    +   ++ D       +A           K          PA  I  +
Sbjct: 197 MVYMEKYLENPRHVEIQILADGQGHAVYLAERDCSMQRRHQK-----VVEEAPAPGITDE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + + +      A   I  RG    +FL+   + + +++E+N 
Sbjct: 252 LRRNIGDRCAKACIDINYRGAGTFEFLY--ENGEFYFIEMNT 291


>gi|224826230|ref|ZP_03699332.1| acetyl-CoA carboxylase, biotin carboxylase [Lutiella nitroferrum
           2002]
 gi|224601331|gb|EEG07512.1| acetyl-CoA carboxylase, biotin carboxylase [Lutiella nitroferrum
           2002]
          Length = 452

 Score = 69.8 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 36/222 (16%), Positives = 79/222 (35%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         L  DK+ +KQ +    VP  P    
Sbjct: 77  AIHPGYGFLSENADFAERVEQSGFVFIGPRSETIRLMGDKVSAKQAMIEAKVPTVPGSAG 136

Query: 112 LVNRFTMDS---QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
            +    ++       I  P +IK   GG   G+ V+  + ++   +     ++++     
Sbjct: 137 ALPDDPVEITKMAKKIGFPVIIKASGGGGGRGMRVVHTEAALINSVNMTRTEAAAAFGNP 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E++++    +   V+ D   +   +            K          PA  I   
Sbjct: 197 TVYMEKFLEQPRHIEIQVLSDEYGNAIYLGERDCSMQRRHQK-----IIEEAPAPGITDA 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             K++      A + I  RG    +FL+   + + +++E+N 
Sbjct: 252 QRKKIGEACADACRRISYRGAGTFEFLY--ENGEFYFIEMNT 291


>gi|255003279|ref|ZP_05278243.1| propionyl-CoA carboxylase alpha chain precursor [Anaplasma
           marginale str. Puerto Rico]
          Length = 659

 Score = 69.8 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 42/250 (16%), Positives = 87/250 (34%), Gaps = 22/250 (8%)

Query: 32  KVSQIDVDRSVGLVLAHLKP-----DLAFNVLHGNFG---EDGLVQAILELLEIPYTHSG 83
           +   I    +    L   K      D   + +H  +G   E+      L    + +    
Sbjct: 47  EAVYIGPGPASQSYLDICKICAVAKDTGVDAVHPGYGFLAENAEFPDRLSECGVGFIGPA 106

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSIL-VNRFTMDSQHL---ISPPYVIKPLKGGSSL 139
             +  +  DK+ SK+V    GV V P  + V     D++ +   I  P +IK   GG   
Sbjct: 107 PSSMRMMSDKVVSKRVAQDAGVAVVPGYMGVVESPADAKKIAESIGFPVMIKAAAGGGGK 166

Query: 140 GIIVIKKDQSIPLDLL----QSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAV 194
           G+ V+K  + +    +    ++S      ++ IE+YV+    +   ++ D   +V  +  
Sbjct: 167 GMRVVKSAKEMEQAFVSATNEASKSFSDGRIFIEKYVEFPRHIEVQIVADKHGNVVCLGE 226

Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
            +        K             +     + +        + +    +   +F+ D   
Sbjct: 227 RECSIQRNNQK----VIEETPSPFLDKKTRQNMYDQCVSLAKRVNYFSVGTVEFVIDAEK 282

Query: 255 RKVFWLEINV 264
           R  ++LE+N 
Sbjct: 283 R-FYFLEMNT 291


>gi|254995113|ref|ZP_05277303.1| propionyl-CoA carboxylase alpha chain precursor [Anaplasma
           marginale str. Mississippi]
          Length = 659

 Score = 69.8 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 42/250 (16%), Positives = 87/250 (34%), Gaps = 22/250 (8%)

Query: 32  KVSQIDVDRSVGLVLAHLKP-----DLAFNVLHGNFG---EDGLVQAILELLEIPYTHSG 83
           +   I    +    L   K      D   + +H  +G   E+      L    + +    
Sbjct: 47  EAVYIGPGPASQSYLDICKICAVAKDTGVDAVHPGYGFLAENAEFPDRLSECGVGFIGPA 106

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSIL-VNRFTMDSQHL---ISPPYVIKPLKGGSSL 139
             +  +  DK+ SK+V    GV V P  + V     D++ +   I  P +IK   GG   
Sbjct: 107 PSSMRMMSDKVVSKRVAQDAGVAVVPGYMGVVESPADAKKIAESIGFPVMIKAAAGGGGK 166

Query: 140 GIIVIKKDQSIPLDLL----QSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAV 194
           G+ V+K  + +    +    ++S      ++ IE+YV+    +   ++ D   +V  +  
Sbjct: 167 GMRVVKSAKEMEQAFVSATNEASKSFSDGRIFIEKYVEFPRHIEVQIVADKHGNVVCLGE 226

Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
            +        K             +     + +        + +    +   +F+ D   
Sbjct: 227 RECSIQRNNQK----VIEETPSPFLDKKTRQNMYDQCVSLAKRVNYFSVGTVEFVIDAEK 282

Query: 255 RKVFWLEINV 264
           R  ++LE+N 
Sbjct: 283 R-FYFLEMNT 291


>gi|222475296|ref|YP_002563713.1| propionyl-CoA carboxylase alpha chain precursor (pycA) [Anaplasma
           marginale str. Florida]
 gi|222419434|gb|ACM49457.1| propionyl-CoA carboxylase alpha chain precursor (pycA) [Anaplasma
           marginale str. Florida]
          Length = 662

 Score = 69.8 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 42/250 (16%), Positives = 87/250 (34%), Gaps = 22/250 (8%)

Query: 32  KVSQIDVDRSVGLVLAHLKP-----DLAFNVLHGNFG---EDGLVQAILELLEIPYTHSG 83
           +   I    +    L   K      D   + +H  +G   E+      L    + +    
Sbjct: 50  EAVYIGPGPASQSYLDICKICAVAKDTGVDAVHPGYGFLAENAEFPDRLSECGVGFIGPA 109

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSIL-VNRFTMDSQHL---ISPPYVIKPLKGGSSL 139
             +  +  DK+ SK+V    GV V P  + V     D++ +   I  P +IK   GG   
Sbjct: 110 PSSMRMMSDKVVSKRVAQDAGVAVVPGYMGVVESPADAKKIAESIGFPVMIKAAAGGGGK 169

Query: 140 GIIVIKKDQSIPLDLL----QSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAV 194
           G+ V+K  + +    +    ++S      ++ IE+YV+    +   ++ D   +V  +  
Sbjct: 170 GMRVVKSAKEMEQAFVSATNEASKSFSDGRIFIEKYVEFPRHIEVQIVADKHGNVVCLGE 229

Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
            +        K             +     + +        + +    +   +F+ D   
Sbjct: 230 RECSIQRNNQK----VIEETPSPFLDKKTRQNMYDQCVSLAKRVNYFSVGTVEFVIDAEK 285

Query: 255 RKVFWLEINV 264
           R  ++LE+N 
Sbjct: 286 R-FYFLEMNT 294


>gi|220912315|ref|YP_002487624.1| pyruvate carboxylase [Arthrobacter chlorophenolicus A6]
 gi|219859193|gb|ACL39535.1| pyruvate carboxylase [Arthrobacter chlorophenolicus A6]
          Length = 1132

 Score = 69.8 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 40/249 (16%), Positives = 84/249 (33%), Gaps = 18/249 (7%)

Query: 28  DAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87
           + G  V        V  V      D  +   +G   E+  +    +   I +        
Sbjct: 53  EEGHPVRAYLDVAEVVRVAKEAGADAIYPG-YGFLSENPDLARAAKEAGITFVGPPAEVL 111

Query: 88  ALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD---SQHLISPPYVIKPLKGGSSLGIIVI 144
            L+ +K+ + +   + GVPV  S   ++   +   +   I  P   K + GG   G+  +
Sbjct: 112 ELAGNKVAALKAARAAGVPVLKSSEPSKDLDELLAAADEIGFPIFAKAVAGGGGRGMRRV 171

Query: 145 KKDQSIPLDLLQS-----SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDF 199
              +++P  L  +     +++      L +  +    +   ++ DA  +V  +       
Sbjct: 172 DTREALPEALKSAMREADAAFGDPTMFLEQAVLRPRHIEVQILADAEGNVMHLFERDCSI 231

Query: 200 YSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS---R 255
                K        + PA  +   I + + R A    QA+        +FL D       
Sbjct: 232 QRRHQK-----VIEIAPAPNLDDSIRQALYRDAVKFAQALNYVNAGTVEFLVDTEGERAG 286

Query: 256 KVFWLEINV 264
           +  ++E+N 
Sbjct: 287 QHVFIEMNP 295


>gi|156367562|ref|XP_001627485.1| predicted protein [Nematostella vectensis]
 gi|156214396|gb|EDO35385.1| predicted protein [Nematostella vectensis]
          Length = 710

 Score = 69.8 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 41/217 (18%), Positives = 76/217 (35%), Gaps = 22/217 (10%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      LE   I +      A     DK+ SK +     V + P    
Sbjct: 124 AVHPGYGFLSENYRFVGRLEEEGITFIGPNAKAMHAMGDKIESKLIGKRAKVNIIPGF-- 181

Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGDQLLI 168
                +    +S P ++K   GG   G+ V   D+             +SS+   D+LL+
Sbjct: 182 -----EGVVKVSYPVMLKASAGGGGKGMRVAWNDEEAREGFRLSSQEAASSFG-DDRLLV 235

Query: 169 EQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227
           E+++D    +   V+GD   +   +   +        K             +  D+ + +
Sbjct: 236 ERFIDNPRHIEIQVIGDKHGNAVYLNERECSIQRRNQK----VIEEAPSPFVDPDMRRAM 291

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              A    +A+G       + L D      ++LE+N 
Sbjct: 292 GEQAVSLAKAVGYDSAGTVECLVDSQKN-FYFLEMNT 327


>gi|150400989|ref|YP_001324755.1| phosphoribosylglycinamide formyltransferase 2 [Methanococcus
           aeolicus Nankai-3]
 gi|171460851|sp|A6UUH1|PURT_META3 RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|150013692|gb|ABR56143.1| phosphoribosylglycinamide formyltransferase 2 [Methanococcus
           aeolicus Nankai-3]
          Length = 391

 Score = 69.8 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 38/250 (15%), Positives = 87/250 (34%), Gaps = 24/250 (9%)

Query: 31  FKVSQIDVDR--SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
            +   ID+    ++  +L    PD     +      D L++  +E            A+ 
Sbjct: 53  HRSYVIDMKDGDALKAILEKEVPDYIIPEIEAINT-DILIE--MEEFGHQVV-PTANAAK 108

Query: 89  LSMDKMRSKQVV-SSCGVPVCPSILVNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVIK 145
           ++MD+   +++      +P               +   I  P ++KP+   S  G   +K
Sbjct: 109 ITMDREGIRRLASEQLNIPTAKYEFAESLEELKKAVKKIGAPCIVKPIMSSSGKGQSTVK 168

Query: 146 K--DQSIPLD--LLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYS 201
              D+ I       Q+ +   G ++++E++++  +    ++   +   T    P      
Sbjct: 169 SEKDEDIEYAWNYAQAGARGIGKKVIVEEFIN-FDYEITLLTARTAHGTVYCPPIGHIQD 227

Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
                         P  +  ++ K+ Q +A      +G  GI   +        +V + E
Sbjct: 228 -----GGDYIESWQPHPMSEEMIKKAQEMANKITTVLGGNGIFGVELFIR--GDEVIFSE 280

Query: 262 INVQP---GM 268
           ++ +P   GM
Sbjct: 281 VSPRPHDTGM 290


>gi|313638445|gb|EFS03630.1| pyruvate carboxylase [Listeria seeligeri FSL S4-171]
          Length = 880

 Score = 69.8 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 36/243 (14%), Positives = 82/243 (33%), Gaps = 25/243 (10%)

Query: 35  QIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSM 91
            +D+  ++  +      D     +H  +G   E+       E   I +         +  
Sbjct: 63  YLDI-ENIIEIAKESGAD----AIHPGYGFLSENIEFARRCEQEGIIFVGPKSKHLDMFG 117

Query: 92  DKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK- 146
           DK+++K+     G+PV P     +   +   +       P +IK   GG   G+ V++  
Sbjct: 118 DKIKAKEQALLAGIPVIPGSDGPVAGIKEVEEFGEKNGYPLMIKASLGGGGRGMRVVESK 177

Query: 147 ---DQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSY 202
               +S      ++ +    D++ +E+ V +   +   ++GD   ++  +          
Sbjct: 178 EHVKESFERASSEAKAAFGNDEVYVEKCVMNPKHIEVQILGDTHGNIVHLFERDCSIQRR 237

Query: 203 ELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
             K        V P   I  ++   +   A      +        +FL        +++E
Sbjct: 238 HQK-----VVEVAPCNAITSELRNRICDAAVKLMNNVDYINAGTVEFLV--EGDDFYFIE 290

Query: 262 INV 264
           +N 
Sbjct: 291 VNP 293


>gi|292656608|ref|YP_003536505.1| biotin carboxylase [Haloferax volcanii DS2]
 gi|291372804|gb|ADE05031.1| biotin carboxylase [Haloferax volcanii DS2]
          Length = 599

 Score = 69.8 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 32/221 (14%), Positives = 72/221 (32%), Gaps = 20/221 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      +E  E  +      A     +K +++ ++    VPV P    
Sbjct: 77  AIHPGYGFLAENATFARKVEESEFTWVGPSADAMERLGEKTKARALMQDADVPVVPGTTE 136

Query: 114 NRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKK----DQSIPLDLLQSSSWNHGDQ 165
              +             P  IK   GG   G+ V+      D+       +  ++     
Sbjct: 137 PADSAADVKAVADEFGYPVAIKAEGGGGGRGLKVVHSEDEVDEQFETAKREGEAYFDNAS 196

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           + +E+Y++    +   ++ D   +     V         L+          P+  +  D+
Sbjct: 197 VYVEKYLEAPRHIEVQILADEHGN-----VRHLGERDCSLQRRHQKVIEEAPSPALSDDL 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +   A    +A         +FL      + +++E+N 
Sbjct: 252 RERIGEAARRGVRAADYTNAGTVEFLV--EDGEFYFMEVNT 290


>gi|260583689|ref|ZP_05851437.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Granulicatella
           elegans ATCC 700633]
 gi|260158315|gb|EEW93383.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Granulicatella
           elegans ATCC 700633]
          Length = 456

 Score = 69.8 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 81/220 (36%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  FG   E+     + E  ++ +         +  DK ++++ +   GVPV P    
Sbjct: 77  AIHPGFGFLSENPKFAKMCEECQVKFIGPSAHVIQMMGDKAQARKQMMKAGVPVIPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSWNHGDQ 165
            +      +     I  P +IK + GG   GI  ++              ++      ++
Sbjct: 137 VVPTVEEGLKIAEKIGFPLLIKAVAGGGGKGIRKVQSLDEFEKQFLAAQQEALQAFGNEE 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+ +     +   ++ D+  +V  +            + +           +  ++ 
Sbjct: 197 VYIERIIYPAKHIEFQILADSYGNVVHLGERDCSL----QRKNQKIIEEAPSPYLDDNLR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K++ + A LA  ++G       +FL D   +  +++E+N 
Sbjct: 253 KDMGQAAVLAATSVGYENAGTIEFLVD-QDKNFYFMEMNT 291


>gi|197106049|ref|YP_002131426.1| carbamoyl-phosphate synthase, large subunit [Phenylobacterium
           zucineum HLK1]
 gi|196479469|gb|ACG78997.1| carbamoyl-phosphate synthase, large subunit [Phenylobacterium
           zucineum HLK1]
          Length = 1096

 Score = 69.8 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 34/199 (17%), Positives = 76/199 (38%), Gaps = 8/199 (4%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ--HLISPPYV 129
           LE   IP   +   A  L+ D+ R +Q++    +    + +           H +  P V
Sbjct: 665 LEDAGIPILGTSPDAIDLAEDRERFQQLLHKLKIAQPVNAIARSREEAFAAVHKVGYPVV 724

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           I+P        + +++ D+ +   +  +   +    +LI+QY+    E+    + D +  
Sbjct: 725 IRPSYVLGGRAMEIVRDDEQLERYITTAVQVSGDSPVLIDQYLSRATEVDVDALCDDAGQ 784

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           V    V   +       +S  ++  + P  +  +   E++R      +A+  RG+    F
Sbjct: 785 VFVAGV--MEHIEEAGVHSGDSACSLPPYSLKAETIAELKRQTEAMARALSVRGLMNVQF 842

Query: 249 LFDPLSRK---VFWLEINV 264
             +        ++ LE+N 
Sbjct: 843 AIEDAQGPEPRIYVLEVNP 861



 Score = 58.2 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 41/278 (14%), Positives = 96/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL   G+++  ++ + +                     V  ++A  +PD    
Sbjct: 29  SGVQACKALRAEGYRIVLVNSNPATIMTDPEIADATYIEPITPEMVEKIIAKERPDALLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      +L    +    +       + D+ + +  + + G+    S +
Sbjct: 89  TMGGQTALNTALALERTGVLAKYGVEMIGARADVIDKAEDRQKFRDAMDAIGLESPRSQV 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     M     +  P +I+P    +  G  +    +     + +    +   ++LIE+
Sbjct: 149 AHTLEEAMAGLEQVGLPAIIRPSFTLAGTGGGIAYNVEEFKEIVERGLDLSPTTEVLIEE 208

Query: 171 YVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEV 227
            V G  E    V+ D + + +   ++   D           +S  V PA  +    Y+ +
Sbjct: 209 SVLGWKEYEMEVVRDRADNCIIVCSIENVDPMGVHT----GDSITVAPALTLADKEYQRM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P   ++  +E+N 
Sbjct: 265 RAASIAVLREIGVETGGSNVQFAVNPADGRMVVIEMNP 302


>gi|153809398|ref|ZP_01962066.1| hypothetical protein BACCAC_03712 [Bacteroides caccae ATCC 43185]
 gi|149127984|gb|EDM19206.1| hypothetical protein BACCAC_03712 [Bacteroides caccae ATCC 43185]
          Length = 503

 Score = 69.8 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 82/220 (37%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       +   I +            DK+ ++  +   GVPV P    
Sbjct: 77  AIHPGYGFLSENAAFARRCQEEGIIFIGPNPETMEAMGDKISARIKMIEAGVPVVPGTQE 136

Query: 114 NRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
           N  +++      + I  P ++K   GG   G+ +I   + +      + S +      D 
Sbjct: 137 NLKSVEEAVELCNKIGYPVMLKASMGGGGKGMRLIHSAEEVEEAYTTAKSESLSSFGDDT 196

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E++V+    +   ++GD   +V  +   +        K             +  ++ 
Sbjct: 197 VYLEKFVEEPHHIEFQILGDKHGNVIHLCERECSVQRRNQKI----VEETPSVFVTPELR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K++   A  A +A+   G    +FL D   R  ++LE+N 
Sbjct: 253 KDMGEKAVAAAKAVNYIGAGTIEFLVDKH-RNYYFLEMNT 291


>gi|157828812|ref|YP_001495054.1| propionyl-CoA carboxylase alpha chain precursor [Rickettsia
           rickettsii str. 'Sheila Smith']
 gi|165933538|ref|YP_001650327.1| propionyl-CoA carboxylase biotin-containing subunit [Rickettsia
           rickettsii str. Iowa]
 gi|238651072|ref|YP_002916930.1| propionyl-CoA carboxylase biotin-containing subunit [Rickettsia
           peacockii str. Rustic]
 gi|157801293|gb|ABV76546.1| propionyl-CoA carboxylase alpha chain precursor [Rickettsia
           rickettsii str. 'Sheila Smith']
 gi|165908625|gb|ABY72921.1| propionyl-CoA carboxylase biotin-containing subunit [Rickettsia
           rickettsii str. Iowa]
 gi|238625170|gb|ACR47876.1| propionyl-CoA carboxylase biotin-containing subunit [Rickettsia
           peacockii str. Rustic]
          Length = 665

 Score = 69.8 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 81/221 (36%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+     IL+   +              DK+ +K++    GV   P  + 
Sbjct: 81  AVHPGYGFLSENPNFANILKREGVVLIGPSAGTIKKMGDKIEAKKIAIEAGVSTVPGYMG 140

Query: 114 N----RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD-----LLQSSSWNHGD 164
                +  +D    I  P ++K   GG   G+ V+     +        L  ++S++  D
Sbjct: 141 TINDVKQAIDIAKEIGFPVIVKAAAGGGGRGMRVVNNPAEMANAFESAKLEAANSFS-DD 199

Query: 165 QLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           +L IE+ +     +   ++ D   +   +   +     +  K           + I  DI
Sbjct: 200 RLFIEKLIQTPRHIEIQLIADQYGNSVCLGERECSIQRHHQK----VIEEAPSSFITEDI 255

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +E+ R      Q +G       +F+ D  ++  ++LE+N 
Sbjct: 256 RQEMYRQVISLSQKVGYYSAGTVEFIVD-SNKNFYFLEMNT 295


>gi|34581416|ref|ZP_00142896.1| propionyl-CoA carboxylase alpha chain precursor [Rickettsia
           sibirica 246]
 gi|28262801|gb|EAA26305.1| propionyl-CoA carboxylase alpha chain precursor [Rickettsia
           sibirica 246]
          Length = 665

 Score = 69.8 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 81/221 (36%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+     IL+   +              DK+ +K++    GV   P  + 
Sbjct: 81  AVHPGYGFLSENPNFANILKREGVVLIGPSAGTIKKMGDKIEAKKIAIEAGVSTVPGYMG 140

Query: 114 N----RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD-----LLQSSSWNHGD 164
                +  +D    I  P ++K   GG   G+ V+     +        L  ++S++  D
Sbjct: 141 TINDVKQAIDIAKEIGFPVIVKAAAGGGGRGMRVVNNPAEMANAFESAKLEAANSFS-DD 199

Query: 165 QLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           +L IE+ +     +   ++ D   +   +   +     +  K           + I  DI
Sbjct: 200 RLFIEKLIQTPRHIEIQLIADQYGNSVCLGERECSIQRHHQK----VIEEAPSSFITEDI 255

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +E+ R      Q +G       +F+ D  ++  ++LE+N 
Sbjct: 256 RQEMYRQVISLSQKVGYYSAGTVEFIVD-SNKNFYFLEMNT 295


>gi|301309016|ref|ZP_07214961.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Bacteroides sp.
           20_3]
 gi|300833042|gb|EFK63667.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Bacteroides sp.
           20_3]
          Length = 503

 Score = 69.8 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 43/253 (16%), Positives = 88/253 (34%), Gaps = 29/253 (11%)

Query: 32  KVSQIDVDRSVGLVLAHLKPDLAF-------NVLHGNFG---EDGLVQAILELLEIPYTH 81
           +   I  D +    L   KPDL           +H  +G   E+       E   + +  
Sbjct: 47  EAYCISEDEADTSYL---KPDLILEIAKKTGAAIHPGYGFLSENADFARRCEEEGVIFIG 103

Query: 82  SGILASALSMDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGS 137
                 A    K  +++++   GVPV P     +            +  P ++K L GG 
Sbjct: 104 PSADVIAKMGIKTEARKIMKEAGVPVVPGTEKPVTDIEDAKKVAAEVGYPIMLKALAGGG 163

Query: 138 SLGIIVIKKDQSIPLDL-----LQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTE 191
             G+ ++  +  +           ++S+   D + IE+Y++    +   V+GD   +V  
Sbjct: 164 GKGMRLVHSEDEMEAAFRMSRSEAANSFG-NDAIYIEKYIENPHHIEVQVLGDKYGNVIH 222

Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
           +   +        K             +     +++  +A  A + IG       +F+ D
Sbjct: 223 LYERECSIQRRNQK----VIEEAPSPFVKEAARQKMLAVAVEACKKIGYYSAGTLEFMMD 278

Query: 252 PLSRKVFWLEINV 264
              +  ++LE+N 
Sbjct: 279 K-DQNFYFLEMNT 290


>gi|255019758|ref|ZP_05291835.1| Ribosomal protein S6 glutaminyl transferase [Acidithiobacillus
           caldus ATCC 51756]
 gi|254970826|gb|EET28311.1| Ribosomal protein S6 glutaminyl transferase [Acidithiobacillus
           caldus ATCC 51756]
          Length = 298

 Score = 69.8 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 38/191 (19%), Positives = 72/191 (37%), Gaps = 13/191 (6%)

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ--HLISPPYVIKPLKGG 136
           Y  +   A   + DK  S Q++ + G+PV  +      +        ++PP V+K L G 
Sbjct: 86  YCLNDADALLAARDKFGSLQILQAAGLPVPRTAYFAHASQKEALLDTLAPPVVVKLLSGS 145

Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI-ELTCGVMGDASLDVTEIAVP 195
             +G+ + +  +     L       H  + ++++++ G  +L   V+GD  L   E    
Sbjct: 146 QGVGVNLAESREVASALLDTLLHLQH--EAMVQEFLPGRSDLRVIVLGDRVLAAMERRAS 203

Query: 196 KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255
             DF S                 +   +  +VQ L+  A  A+     +  D +      
Sbjct: 204 AQDFRSNLH---CGGQARAWDLGV---LDAQVQELSRRASAALDL-DFAGVDLM-RAADG 255

Query: 256 KVFWLEINVQP 266
            +  LE+N  P
Sbjct: 256 SLRVLEVNPVP 266


>gi|269120361|ref|YP_003308538.1| acetyl-CoA carboxylase, biotin carboxylase [Sebaldella termitidis
           ATCC 33386]
 gi|268614239|gb|ACZ08607.1| acetyl-CoA carboxylase, biotin carboxylase [Sebaldella termitidis
           ATCC 33386]
          Length = 448

 Score = 69.8 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 77/220 (35%), Gaps = 18/220 (8%)

Query: 58  LHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS---- 110
           +H  +G   E+     I     I +        +   DK  ++    +  VP+       
Sbjct: 78  IHPGYGFLSENAGFAKICAENNIVFIGPSPEIISQMGDKATARATAIAHKVPITKGSDGI 137

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSWNHGDQ 165
              +    + ++  I+ P +IK   GG   G+ + + ++ +         ++ +      
Sbjct: 138 IKDIKEARILAKKEITYPVIIKATAGGGGKGMRIARNEKELEENMVAAQTEAQAAFGNPD 197

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+YV+    +   ++GD   +V  +            K           A I   I 
Sbjct: 198 VYIEKYVEEPRHVEIQIIGDKFGNVVHLGERDCSIQRRHQK----LIEEAPSAGINKSIR 253

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +++ + A    + I    +   +FL D      +++E+N 
Sbjct: 254 EKMGKTAVALAKGIKYDSVGTLEFLVDKSGN-FYFMEMNT 292


>gi|254430029|ref|ZP_05043736.1| Carbamoyl-phosphate synthase L chain, ATP binding domain protein
           [Alcanivorax sp. DG881]
 gi|196196198|gb|EDX91157.1| Carbamoyl-phosphate synthase L chain, ATP binding domain protein
           [Alcanivorax sp. DG881]
          Length = 1089

 Score = 69.8 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 73/221 (33%), Gaps = 18/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP----VCP 109
            +H  +G   E+           +     G     L  DK  ++ + + C VP       
Sbjct: 79  AIHPGYGFLAENAEFAEQCVRAGLTLIGPGAETLRLFGDKAEARALAAKCQVPLVQGTAQ 138

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
           ++ +         L     +IK L GG   G+  +    ++         ++ +    D 
Sbjct: 139 AVTMEEAQAFMASLDGSGVMIKALSGGGGRGMRAVTDPAALKAAFQRCQSEAKAAFGNDA 198

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           + +EQ V     +   V+GD S  V+ +            K          PA  +   +
Sbjct: 199 VYVEQLVPAARHIEVQVLGDGSGAVSHLWERDCTLQRRHQKL-----VEFAPAPGLDAAL 253

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              +   A      +   GI   +FL +P + + F++E N 
Sbjct: 254 RDRIIDSALTLAAEVNYLGIGTFEFLVEPDAGRHFFMEANP 294


>gi|150006750|ref|YP_001301493.1| putative biotin carboxylase 1 [Parabacteroides distasonis ATCC
           8503]
 gi|256842267|ref|ZP_05547771.1| acetyl-CoA carboxylase, biotin carboxylase [Parabacteroides sp.
           D13]
 gi|262384827|ref|ZP_06077959.1| acetyl-CoA carboxylase, biotin carboxylase [Bacteroides sp.
           2_1_33B]
 gi|149935174|gb|ABR41871.1| putative biotin carboxylase 1 [Parabacteroides distasonis ATCC
           8503]
 gi|256736151|gb|EEU49481.1| acetyl-CoA carboxylase, biotin carboxylase [Parabacteroides sp.
           D13]
 gi|262293543|gb|EEY81479.1| acetyl-CoA carboxylase, biotin carboxylase [Bacteroides sp.
           2_1_33B]
          Length = 503

 Score = 69.8 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 43/253 (16%), Positives = 88/253 (34%), Gaps = 29/253 (11%)

Query: 32  KVSQIDVDRSVGLVLAHLKPDLAF-------NVLHGNFG---EDGLVQAILELLEIPYTH 81
           +   I  D +    L   KPDL           +H  +G   E+       E   + +  
Sbjct: 47  EAYCISEDEADTSYL---KPDLILEIAKKTGAAIHPGYGFLSENADFARRCEEEGVIFIG 103

Query: 82  SGILASALSMDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGS 137
                 A    K  +++++   GVPV P     +            +  P ++K L GG 
Sbjct: 104 PSADVIAKMGIKTEARKIMKEAGVPVVPGTEKPVTDIEDAKKVAAEVGYPIMLKALAGGG 163

Query: 138 SLGIIVIKKDQSIPLDL-----LQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTE 191
             G+ ++  +  +           ++S+   D + IE+Y++    +   V+GD   +V  
Sbjct: 164 GKGMRLVHSEDEMEAAFRMSRSEAANSFG-NDAIYIEKYIENPHHIEVQVLGDKYGNVIH 222

Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
           +   +        K             +     +++  +A  A + IG       +F+ D
Sbjct: 223 LYERECSIQRRNQK----VIEEAPSPFVKEAARQKMLAVAVEACKKIGYYSAGTLEFMMD 278

Query: 252 PLSRKVFWLEINV 264
              +  ++LE+N 
Sbjct: 279 K-DQNFYFLEMNT 290


>gi|15892882|ref|NP_360596.1| propionyl-CoA carboxylase alpha chain precursor [Rickettsia conorii
           str. Malish 7]
 gi|15620071|gb|AAL03497.1| propionyl-CoA carboxylase alpha chain precursor [Rickettsia conorii
           str. Malish 7]
          Length = 665

 Score = 69.8 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 81/221 (36%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+     IL+   +              DK+ +K++    GV   P  + 
Sbjct: 81  AVHPGYGFLSENPNFANILKREGVVLIGPSAGTIKKMGDKIEAKKIAIEAGVSTVPGYMG 140

Query: 114 N----RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD-----LLQSSSWNHGD 164
                +  +D    I  P ++K   GG   G+ V+     +        L  ++S++  D
Sbjct: 141 TINDVKQAIDIAKEIGFPVIVKAAAGGGGRGMRVVNNPAEMANAFESAKLEAANSFS-DD 199

Query: 165 QLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           +L IE+ +     +   ++ D   +   +   +     +  K           + I  DI
Sbjct: 200 RLFIEKLIQTPRHIEIQLIADQYGNSVCLGERECSIQRHHQK----VIEEAPSSFITEDI 255

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +E+ R      Q +G       +F+ D  ++  ++LE+N 
Sbjct: 256 RQEMYRQVISLSQKVGYYSAGTVEFIVD-SNKNFYFLEMNT 295


>gi|317054177|ref|YP_004118202.1| acetyl-CoA carboxylase, biotin carboxylase [Pantoea sp. At-9b]
 gi|316952172|gb|ADU71646.1| acetyl-CoA carboxylase, biotin carboxylase [Pantoea sp. At-9b]
          Length = 449

 Score = 69.8 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 78/222 (35%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+      +E     +         L  DK+ +   +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAEQVERSGFIFIGPKADTIRLMGDKVSAITAMKKAGVPTVPGSDG 136

Query: 111 --ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
                          I  P +IK   GG   G+ V++ D+ +   +     ++ +  + D
Sbjct: 137 PLTEDMDKNRAFAKRIGYPVIIKASGGGGGRGMRVVRSDKDLEQSINMTKAEAKAAFNND 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+Y++    +   VM D   +   +A           K          PA  I  +
Sbjct: 197 MVYMEKYLENPRHIEIQVMADGQGNAIYLAERDCSMQRRHQK-----VVEEAPAPGITPE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +   +      A   IG RG    +FLF   + + +++E+N 
Sbjct: 252 LRSFIGDRCAKACVDIGYRGAGTFEFLF--ENGEFYFIEMNT 291


>gi|308453676|ref|XP_003089535.1| hypothetical protein CRE_22213 [Caenorhabditis remanei]
 gi|308239882|gb|EFO83834.1| hypothetical protein CRE_22213 [Caenorhabditis remanei]
          Length = 769

 Score = 69.8 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 76/221 (34%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H  +G   E+           + +      A      K  SKQ++    VPV      
Sbjct: 176 AIHPGYGFLSENAGFADKCAQAGLVFIGPPAQAIRDMGAKNVSKQIMEDAKVPVVKGFHG 235

Query: 113 ---VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
               +         I  P ++K + GG   G+ +   +      L  + +        D+
Sbjct: 236 EDQSDANLKKKSQEIGYPVMLKAVYGGGGKGMRIAWNEAEFDEKLASARNEAKKSFGNDE 295

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDI 223
           +L+E++V+    +   V GD   +   +           ++          PA  +  + 
Sbjct: 296 MLVEKFVEKPRHVEVQVFGDHHGNYVHLWE-----RDCSVQRRHQKIIEEAPAPNMAHET 350

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             ++   A  A  A+G  G    +F+ DP   + F++E+N 
Sbjct: 351 RLKLGESAVRAAAAVGYVGAGTVEFIMDPR-GEFFFMEMNT 390


>gi|302829048|ref|XP_002946091.1| pyruvate carboxylase [Volvox carteri f. nagariensis]
 gi|300268906|gb|EFJ53086.1| pyruvate carboxylase [Volvox carteri f. nagariensis]
          Length = 1283

 Score = 69.8 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 39/245 (15%), Positives = 88/245 (35%), Gaps = 24/245 (9%)

Query: 33  VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASAL 89
              +D+D ++  V    + D     +H  +G   E+ +         I +          
Sbjct: 148 ACYLDMD-TIIRVAKEAEVD----AIHPGYGFLSENAVFARKCADAGIVFIGPKPETIEA 202

Query: 90  SMDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145
             DK  +++    CGV V P     +       +       P ++K   GG   G+ V++
Sbjct: 203 MGDKTAARRAALECGVSVVPGTNQPLFSPDEAKEFATKYGYPVILKAAMGGGGRGMRVVR 262

Query: 146 KDQSIPLDLLQSSSWNH----GDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFY 200
            +  +    +++S+         ++ +E+YV+    +   ++ D   +V  +        
Sbjct: 263 HESEMSDAFIRASNEARSAFGDGRMFVEKYVEEPRHIEIQILADHYGNVVHLYE-----R 317

Query: 201 SYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
              ++        + PA K+P    + +   A    + +G R     +F+ D      ++
Sbjct: 318 DCSVQRRHQKVVEIAPAPKLPNKTRRALYDDAVKLARHVGYRNAGTVEFMVDKDGNH-YF 376

Query: 260 LEINV 264
           LE+N 
Sbjct: 377 LEVNP 381


>gi|298377712|ref|ZP_06987663.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Bacteroides sp.
           3_1_19]
 gi|298265415|gb|EFI07077.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Bacteroides sp.
           3_1_19]
          Length = 503

 Score = 69.8 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 43/253 (16%), Positives = 88/253 (34%), Gaps = 29/253 (11%)

Query: 32  KVSQIDVDRSVGLVLAHLKPDLAF-------NVLHGNFG---EDGLVQAILELLEIPYTH 81
           +   I  D +    L   KPDL           +H  +G   E+       E   + +  
Sbjct: 47  EAYCISEDEADTSYL---KPDLILEIAKKTGAAIHPGYGFLSENADFARRCEEEGVIFIG 103

Query: 82  SGILASALSMDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGS 137
                 A    K  +++++   GVPV P     +            +  P ++K L GG 
Sbjct: 104 PSADVIAKMGIKTEARKIMKEAGVPVVPGTEKPVTDIEDAKKVAAEVGYPIMLKALAGGG 163

Query: 138 SLGIIVIKKDQSIPLDL-----LQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTE 191
             G+ ++  +  +           ++S+   D + IE+Y++    +   V+GD   +V  
Sbjct: 164 GKGMRLVHSEDEMEAAFRMSRSEAANSFG-NDAIYIEKYIENPHHIEVQVLGDKYGNVIH 222

Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
           +   +        K             +     +++  +A  A + IG       +F+ D
Sbjct: 223 LYERECSIQRRNQK----VIEEAPSPFVKEAARQKMLAVAVEACKKIGYYSAGTLEFMMD 278

Query: 252 PLSRKVFWLEINV 264
              +  ++LE+N 
Sbjct: 279 K-DQNFYFLEMNT 290


>gi|292486764|ref|YP_003529634.1| acetyl-CoA carboxylase biotin carboxylase subunit [Erwinia
           amylovora CFBP1430]
 gi|292900836|ref|YP_003540205.1| biotin carboxylase (acetyl-CoA carboxylase subunit A) [Erwinia
           amylovora ATCC 49946]
 gi|291200684|emb|CBJ47816.1| biotin carboxylase (acetyl-CoA carboxylase subunit A) [Erwinia
           amylovora ATCC 49946]
 gi|291552181|emb|CBA19218.1| acetyl-CoA carboxylase biotin carboxylase subunit [Erwinia
           amylovora CFBP1430]
          Length = 449

 Score = 69.8 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 39/222 (17%), Positives = 79/222 (35%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+      +E     +         L  DK+ +   +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAEQVERSGFIFIGPKADTIRLMGDKVSAITAMKKAGVPTVPGSDG 136

Query: 111 --ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
                          I  P +IK   GG   G+ V++ D+ +   +     ++ +  + D
Sbjct: 137 PLTEDMDKNRAFAKRIGYPVIIKASGGGGGRGMRVVRSDKDLEQSINMTKAEAKAAFNND 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+Y++    +   V+ D   +   +A           K          PA  I  +
Sbjct: 197 MVYMEKYLENPRHIEIQVLADGQGNAIYLAERDCSMQRRHQK-----VVEEAPAPGITEE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + + +      A   IG RG    +FL+   + + +++E+N 
Sbjct: 252 MRRYIGDRCSKACIDIGYRGAGTFEFLY--ENGEFYFIEMNT 291


>gi|283458036|ref|YP_003362646.1| carbamoyl-phosphate synthase large subunit [Rothia mucilaginosa
           DY-18]
 gi|283134061|dbj|BAI64826.1| carbamoyl-phosphate synthase large subunit [Rothia mucilaginosa
           DY-18]
          Length = 1106

 Score = 69.8 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 48/288 (16%), Positives = 109/288 (37%), Gaps = 36/288 (12%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI---------DVD------------RSVGLV 45
           G ++E + S   G      L++ G +V  +         D +              +  +
Sbjct: 21  GQAAEFDYS---GTQALRVLKEEGVRVILVNSNPATIMTDPEFADATYIEPITPEVIEKI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   KPD     L G    +  +    + +L    +    + I A  L  D+   K VV 
Sbjct: 78  IEKEKPDAILPTLGGQTALNAAISLDERGVLAKYNVELIGANIEAINLGEDREAFKGVVE 137

Query: 102 SCGVPVCPSILVNR--FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G     S++V+     +++   +  P V++P      LG  +   ++ +         
Sbjct: 138 RAGGESARSVIVHSMPEALEAAKELGYPMVVRPSFTMGGLGSGMAYNEEDLYRIAGAGIQ 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA- 217
           ++   ++L+E+ + G  E    +M D + +V  +   ++      +   + +S  V PA 
Sbjct: 198 YSPTSEVLLEESILGWKEYELEMMRDTNDNVVVVCSIENFD---PVGVHTGDSITVAPAL 254

Query: 218 KIPLDIYKEVQRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
            +    +++++ +A    + +G   G     F  DP + ++  +E+N 
Sbjct: 255 TLTDREFQKLRDIAINVIREVGVDTGGCNIQFAIDPKTGRIIVIEMNP 302



 Score = 55.5 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 40/233 (17%), Positives = 85/233 (36%), Gaps = 25/233 (10%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--QHLISPPYV 129
           L+   +P   +   A  L+ D+    +V+   G+    +     F         I  P +
Sbjct: 655 LKDAGVPILGTTPEAIDLAEDRGEFSRVLEEGGLISPKNGTAFTFEGAKRIADEIGYPVL 714

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDAS-- 186
           ++P       G+ ++  + ++   L  ++  +     LI++++ D IE+    + D    
Sbjct: 715 VRPSYVLGGRGMEIVYDEANLARYLENATEVSPSQPALIDKFLEDAIEIDVDALFDGEEL 774

Query: 187 -LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
            L      + ++  +S        +S  + P  +  DI  +V+       +  G RG+  
Sbjct: 775 YLGGVMEHIEEAGIHS------GDSSCTLPPITLGPDIIAKVKDATEKIARGTGVRGLIN 828

Query: 246 SDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEMAAYA-----GYSFREL 288
             F +   +  ++ +E N       P     +   +MA  A     G S  EL
Sbjct: 829 IQFAYVSEN--LYVIEANPRASRTVP-FVSKATGVQMAKAAVLIGLGKSIAEL 878


>gi|308806706|ref|XP_003080664.1| Acetyl-CoA carboxylase (ISS) [Ostreococcus tauri]
 gi|116059125|emb|CAL54832.1| Acetyl-CoA carboxylase (ISS) [Ostreococcus tauri]
          Length = 1272

 Score = 69.8 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 77/221 (34%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       E   I              DK+ +KQ  + CG+P+ P    
Sbjct: 194 AIHPGYGLLSENATFARRCEEEGIVLIGPRSQTLTEMGDKVIAKQKATECGLPLVPGTAT 253

Query: 114 NRFT----MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
                   ++       P ++K   GG   G+ V+K+   +     ++SS         +
Sbjct: 254 ATMDVNDALEFAREFGMPIMLKAAMGGGGRGMRVVKEFDELEDAFKRASSEAQTAFGDGR 313

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDI 223
           + +E+YV+    +   ++ D   +V              ++        + PA  +   +
Sbjct: 314 MFLERYVEAPRHIEVQILADNYGNVV-----HLGERDCSVQRRHQKVVELAPAPNLDPVL 368

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              +   A    + +  R     +F+ D   R  ++LE+N 
Sbjct: 369 RDTLCNDAIKLAKHVNYRNAGTVEFMVDKEGRH-YFLEVNP 408


>gi|325141597|gb|EGC64062.1| acetyl-CoA carboxylase, biotin carboxylase [Neisseria meningitidis
           961-5945]
 gi|325197640|gb|ADY93096.1| acetyl-CoA carboxylase, biotin carboxylase [Neisseria meningitidis
           G2136]
          Length = 453

 Score = 69.8 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 79/222 (35%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---S 110
            +H  +G   E+      +E     +         L  DK+ +K  +   GVP  P    
Sbjct: 77  AVHPGYGFLAENADFAEQVEQSGFTFIGPKPDTIRLMGDKVSAKHAMIEAGVPCVPGSDG 136

Query: 111 ILVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
            L +     +     +  P +IK   GG   G+ V++K + +   +     ++ +     
Sbjct: 137 ALPDDGEEILKIADKVGYPVIIKASGGGGGRGMRVVEKKEDLLQSVEMTKAEAGAAFGNP 196

Query: 165 QLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+Y+     +   V+ D   +   +A          L+          PA  I   
Sbjct: 197 MVYMERYLQRPRHVEIQVIADEHGNAVYLAE-----RDCSLQRRHQKVIEEAPAPFITEK 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              ++      A + IG RG    +FL+     + F++E+N 
Sbjct: 252 ERAKIGNACADACKRIGYRGAGTFEFLY--EDGEFFFIEMNT 291


>gi|221199581|ref|ZP_03572625.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia
           multivorans CGD2M]
 gi|221205519|ref|ZP_03578534.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia
           multivorans CGD2]
 gi|221174357|gb|EEE06789.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia
           multivorans CGD2]
 gi|221180866|gb|EEE13269.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia
           multivorans CGD2M]
          Length = 404

 Score = 69.8 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 49/278 (17%), Positives = 100/278 (35%), Gaps = 40/278 (14%)

Query: 19  GKACASALEDAGFKVSQID----------------VDRSVGLVLAHL----KPDLAFNVL 58
           GK    AL+  G +V  +D                +D + G  L  L    +P L    +
Sbjct: 27  GKEVVIALQRLGVEVIAVDRYPDAPGHQVAHRAHVIDMTDGAALRALVEAERPHLIVPEI 86

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKM-RSKQVVSSCGVPVCPSILVNRFT 117
                 D L Q  +E   +        A+ L+M++    +    + G+P  P      F 
Sbjct: 87  EAI-ATDALAQ--IEAAGLAEVIPTARATQLTMNREGIRRLAAETLGLPTSPYAFAESFD 143

Query: 118 MDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH--GDQLLIEQYVD 173
             +  +  I  P V+KP+   S  G  V++ +  +      + +       ++++E ++D
Sbjct: 144 EFAAAVSQIGMPCVVKPVMSSSGKGQSVVRTEADVKPAWDYAMAGGRVNHGRVIVEGFID 203

Query: 174 ----GIELTCGVMGDASLDV-TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
                 +LT   +   +LD  T    P           +        P  +     ++ +
Sbjct: 204 FEYEITQLTVRAIDPVTLDTRTWFCEPIGHVQV-----AGDYVESWQPQPMRAAALEKSR 258

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
            +A    +A+G RG+   +        +V++ E++ +P
Sbjct: 259 EIAHKVTEALGGRGLFGVELFVR--GDEVWFSEVSPRP 294


>gi|121634224|ref|YP_974469.1| putative acetyl-CoA carboxylase biotin carboxylase component
           [Neisseria meningitidis FAM18]
 gi|120865930|emb|CAM09667.1| putative acetyl-CoA carboxylase biotin carboxylase component
           [Neisseria meningitidis FAM18]
 gi|325131504|gb|EGC54211.1| acetyl-CoA carboxylase, biotin carboxylase [Neisseria meningitidis
           M6190]
 gi|325137550|gb|EGC60132.1| acetyl-CoA carboxylase, biotin carboxylase [Neisseria meningitidis
           ES14902]
          Length = 453

 Score = 69.8 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 79/222 (35%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---S 110
            +H  +G   E+      +E     +         L  DK+ +K  +   GVP  P    
Sbjct: 77  AVHPGYGFLAENADFAEQVEQSGFTFIGPKPDTIRLMGDKVSAKHAMIEAGVPCVPGSDG 136

Query: 111 ILVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
            L +     +     +  P +IK   GG   G+ V++K + +   +     ++ +     
Sbjct: 137 ALPDDGEEILKIADKVGYPVIIKASGGGGGRGMRVVEKKEDLLQSVEMTKAEAGAAFGNP 196

Query: 165 QLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+Y+     +   V+ D   +   +A          L+          PA  I   
Sbjct: 197 MVYMERYLQRPRHVEIQVIADEHGNAVYLAE-----RDCSLQRRHQKVIEEAPAPFITEK 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              ++      A + IG RG    +FL+     + F++E+N 
Sbjct: 252 ERAKIGNACADACKRIGYRGAGTFEFLY--EDGEFFFIEMNT 291


>gi|22095481|sp|O27077|CARB_METTH RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
          Length = 1060

 Score = 69.8 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 43/288 (14%), Positives = 91/288 (31%), Gaps = 38/288 (13%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQIDVDRS---------------------VGLV 45
           G ++E + S   G     +L + G +   ++ + +                     V  +
Sbjct: 21  GQAAEFDYS---GSQACKSLREEGIETVLVNSNPATIQTDMEMADRVYVEPLTPEIVAKI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQAILEL---LEIPYTHSGILASALSMDKMRSKQVVSS 102
           +   KPD     + G  G +     + E+     +    S I       D+      +  
Sbjct: 78  IQKEKPDAVLPTMGGQTGLNVAT-GLAEMGALEGVRVIGSSIETIRNVEDRDLFDSFMKK 136

Query: 103 CGVPVCPSILVNRFTMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160
              PV  +  V+      + +  I  P +++P       G  V      +     +    
Sbjct: 137 LNEPVPAARAVSSVEEALEAVEEIGYPVIVRPAFTLGGTGGGVAHSRDELIEIATRGLEM 196

Query: 161 NHGDQLLIEQYVDG---IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
           +  +Q+LI+Q V G    E       + +  +    +   D            S  V PA
Sbjct: 197 SFINQVLIDQSVLGWKEFEYEVMRDRNDTCIIVLCNMENIDPMGIHT----GESVVVAPA 252

Query: 218 K-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +  +  + ++  A    +A+   G     F   P + +   +E+N 
Sbjct: 253 QTLSDEDNQRLRDAAIKIIRALKIEGGCNIQFAVHPETGEYKVIEVNP 300



 Score = 61.3 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 37/230 (16%), Positives = 84/230 (36%), Gaps = 13/230 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ--HLISPPYV 129
           L    +    +   +     D+ R  +V++  G+P  P  +   F         I  P +
Sbjct: 639 LAEAGVRILGTPHESIDRVEDRERFTEVLNKLGIPQAPYGIAKSFEDARAVAERIGYPVL 698

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  D  +   + ++   +    +L+++++ D IE+    + D +  
Sbjct: 699 VRPSYVLGGRAMEIVYDDVELEEYMREAVRVSPEHPILVDKFLEDAIEVDVDALCDGTDV 758

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
                +   +    E    S +S  V+P + IP DI   ++         +   G+    
Sbjct: 759 YIGGIMEHIE----EAGVHSGDSACVIPPQSIPEDIIDTIKEYTRKLALELEVVGLINIQ 814

Query: 248 FLFDPLSRK-VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +   P S   V+ LE N +   T     P ++   G    ++   ++  A
Sbjct: 815 YAVKPDSDPSVYILEANPRASRT----VPFVSKATGVPLAKMAARLMMGA 860


>gi|126439921|ref|YP_001059037.1| argininosuccinate lyase [Burkholderia pseudomallei 668]
 gi|237812300|ref|YP_002896751.1| argininosuccinate lyase 2 (arginosuccinase 2) (asal 2)
           [Burkholderia pseudomallei MSHR346]
 gi|254261924|ref|ZP_04952978.1| argininosuccinate lyase [Burkholderia pseudomallei 1710a]
 gi|126219414|gb|ABN82920.1| argininosuccinate lyase [Burkholderia pseudomallei 668]
 gi|237502744|gb|ACQ95062.1| argininosuccinate lyase 2 (arginosuccinase 2) (asal 2)
           [Burkholderia pseudomallei MSHR346]
 gi|254220613|gb|EET09997.1| argininosuccinate lyase [Burkholderia pseudomallei 1710a]
          Length = 900

 Score = 69.8 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 46/234 (19%), Positives = 87/234 (37%), Gaps = 29/234 (12%)

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYVIKP 132
           L +P   +   A     DK R  + +   GV V  + +V+  T   D  H  + P V+KP
Sbjct: 97  LGLP--AADPEAIRTCRDKGRLHRRLRDAGVGVADTEIVSERTQLRDLAHGATYPRVLKP 154

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ-------LLIEQYVDGIELTCGVMGDA 185
             G  S+G+ +++    +     +       ++       +L++ +VDG E +  V+G  
Sbjct: 155 AFGSGSVGVRLVRTPAEMLAHGERMLDARGNERGIALARQVLVQSFVDGPEFSVEVVGLG 214

Query: 186 S---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR- 241
           +     V  +         +      + + H  PA I       +      A  A+G R 
Sbjct: 215 AEHGHAVLGVTGKHLGPLPH-----FVEAGHDFPAPIAAAQRDAIVAETLRALDAVGHRF 269

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA-YAGYSFRELLLWMVE 294
           G +  +        KV  +EIN +       + P+      G    ++L  M++
Sbjct: 270 GPAHVECRV--SDGKVVVIEINPR---LAGGMIPQAIEWATGV---DVLGAMID 315


>gi|325002386|ref|ZP_08123498.1| carbamoyl-phosphate synthase L chain, ATP-binding protein
           [Pseudonocardia sp. P1]
          Length = 585

 Score = 69.8 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 40/245 (16%), Positives = 86/245 (35%), Gaps = 26/245 (10%)

Query: 34  SQIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLV-QAILELLEIPYTHSGILASAL 89
           S +D+D+ +G        D     +H  +G   E+    QA+++   I +      +   
Sbjct: 55  SYLDIDKVIGAA-KQAGAD----AIHPGYGFLSENADFAQAVID-AGITWIGPSPQSIRD 108

Query: 90  SMDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145
             DK+ ++ + +  G P+ P     +      +        P  IK   GG   G+ V +
Sbjct: 109 LGDKVTARHIATRAGAPLVPGTKDPVSGADEVLAFADEYGLPVAIKAAFGGGGRGMKVAR 168

Query: 146 KDQS----IPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFY 200
           +           + ++++     +  +E+Y+D    +   V+ D   +V  +        
Sbjct: 169 ERSEVAELYESAVREATAAFGRGECFVERYLDRPRHVETQVIADQHGNVVVVGT-----R 223

Query: 201 SYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
              L+          PA  +  +  K +   +    +  G  G    +FL       + +
Sbjct: 224 DCSLQRRFQKLVEEAPAPFLTEEQEKTLYDASKAICKEAGYYGAGTVEFLV-GEDGMITF 282

Query: 260 LEINV 264
           LE+N 
Sbjct: 283 LEVNT 287


>gi|303249227|ref|ZP_07335463.1| Carbamoyl-phosphate synthase L chain ATP-binding [Desulfovibrio
           fructosovorans JJ]
 gi|302489367|gb|EFL49319.1| Carbamoyl-phosphate synthase L chain ATP-binding [Desulfovibrio
           fructosovorans JJ]
          Length = 1231

 Score = 69.8 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 41/250 (16%), Positives = 89/250 (35%), Gaps = 37/250 (14%)

Query: 35  QIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSM 91
            +D+D  +    AH    +    +H  +G   ED           I +  S   A     
Sbjct: 72  YLDIDAIIKKAKAHG---VV--AIHPGWGFASEDEEFPRKCAEAGIIFIGSSAEAMKKLG 126

Query: 92  DKMRSKQVVSSCGVPVCP----SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147
           +K+  +++    GVPV P    S+ +     +    I  P ++K   GG   GI  I  +
Sbjct: 127 NKVEVRKIAMDLGVPVVPGSEGSVSIPE-AREIAAKIGFPIMLKAEGGGGGRGIYEIYSE 185

Query: 148 QSIPLDLLQSSSWNH----GDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSY 202
             +     ++S+         +L +E+ +     +   V  D             + +++
Sbjct: 186 AQLESAFSKASAMAQASFGNPRLFVEKLLTSVRHIEIQVAADK----------HGNIFAF 235

Query: 203 ELKYSSLNSTHVLPAKIPL--------DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
           + +  S+   H    +I          ++ + ++  A    +  G   ++  +FL D   
Sbjct: 236 DERDCSVQRNHQKLVEITPSPWRGMTDELRQRLKDYAERLVRETGYYSLATVEFLVDA-D 294

Query: 255 RKVFWLEINV 264
            + + +E+N 
Sbjct: 295 GEPYLIEVNT 304


>gi|300864111|ref|ZP_07109007.1| cyanophycin synthetase [Oscillatoria sp. PCC 6506]
 gi|300337877|emb|CBN54153.1| cyanophycin synthetase [Oscillatoria sp. PCC 6506]
          Length = 906

 Score = 69.8 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 26/112 (23%), Positives = 46/112 (41%), Gaps = 4/112 (3%)

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI---SPPYVIKPLKGGSSLGIIV-I 144
           L+ DK  +K+V+   GVPV    ++N        +      P VIKPL G    GI + I
Sbjct: 216 LACDKEGTKKVLRDAGVPVPKGTVINYLDELQDAIADVGGYPIVIKPLDGNHGRGITIDI 275

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK 196
              +        +S+ +    +++E++  G +    V+    + V E     
Sbjct: 276 NSWEEAEEAYDLASAASKSKSIIVERFYTGRDHRVLVVNGQVVAVAERVPAN 327


>gi|257437660|ref|ZP_05613415.1| conserved hypothetical protein [Faecalibacterium prausnitzii
           A2-165]
 gi|257199967|gb|EEU98251.1| conserved hypothetical protein [Faecalibacterium prausnitzii
           A2-165]
          Length = 457

 Score = 69.8 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 36/192 (18%), Positives = 72/192 (37%), Gaps = 20/192 (10%)

Query: 93  KMRSKQVVSSCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150
           K + K+     G+      +V+           +  P V+KP  G  +     +  D+ +
Sbjct: 115 KSKMKEYYQKAGIATARYHMVDDLEGCRKFIDEVGYPVVVKPDNGVGASDTHKLSSDEEL 174

Query: 151 PLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLN 210
              LL  S+++     ++E++V     +   + D S +    A   S     ++   S N
Sbjct: 175 KRFLLYKSTYHPDLSYIMEEFVHAEVNSYDAIIDGSGNPIFEAGNVSPVSIMDIVNDSDN 234

Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR---SDFLFDPLS-------RKVFWL 260
           S + +   +P D     +     A ++ G +  SR    +F              ++  L
Sbjct: 235 SIYYIIKDLPEDTRAAGR----AAVRSFGVK--SRFVHFEFFRMTEDQVGMGKKGQLVAL 288

Query: 261 EINVQP--GMTP 270
           E+N++P  G TP
Sbjct: 289 EVNMRPCGGFTP 300


>gi|254524347|ref|ZP_05136402.1| carbamoyl-phosphate synthase, large subunit [Stenotrophomonas sp.
           SKA14]
 gi|219721938|gb|EED40463.1| carbamoyl-phosphate synthase, large subunit [Stenotrophomonas sp.
           SKA14]
          Length = 1090

 Score = 69.8 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 47/278 (16%), Positives = 101/278 (36%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL D G++V  +         D +            ++V  ++A  KPD    
Sbjct: 39  SGAQACKALRDEGYRVVLVNSNPATIMTDPEMADAVYIEPINWQTVEKIIAKEKPDALLP 98

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV--PVCPS 110
            + G    +  +      +LE   +    +   A  ++ D+   +  +   G+  P    
Sbjct: 99  TMGGQTALNCALDLADHGVLEKYNVELIGAKREAIRMAEDRELFRVAMGEIGLECPTAAV 158

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  ++ Q  +  P +I+P       G  +    + +   + +    +   ++L+E+
Sbjct: 159 AHTLDEALEIQTRVGYPTIIRPSFTLGGSGGGIAYNREELVEIVSRGLELSPTTEVLVEE 218

Query: 171 YVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            V G  E    V+ D + + +   ++   D           +S  V PA+ +    Y+ +
Sbjct: 219 SVLGWKEFEMEVVRDTADNCIIVCSIENLDPMGVHT----GDSITVAPAQTLTDKEYQRL 274

Query: 228 QRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + +V  +E+N 
Sbjct: 275 RDASIAVLRKIGVDTGGSNVQFGINPKTGRVVVIEMNP 312



 Score = 69.8 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 35/223 (15%), Positives = 90/223 (40%), Gaps = 12/223 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTMDSQHLISPPYV 129
           LE   +P   +   +  L+ D+ R +Q+V   G+   P+ +   ++  +     I  P V
Sbjct: 664 LEANGVPVIGTSPDSIDLAEDRERFQQLVDKLGLKQPPNRIARNDQEALLLAREIGYPLV 723

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLD 188
           ++P        + ++  +  +   +  +   ++   +L+++++D  +E    ++ D   +
Sbjct: 724 VRPSYVLGGRAMEIVYGESDLARYVRDAVKVSNDSPVLLDRFLDNAVECDVDIIADKDGN 783

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           V    V   +       +S  +S  + P  +  +   E++R      +A+   G+  + F
Sbjct: 784 VLIGGV--MEHIEEAGVHSGDSSCSLPPYSLSAETQAELRRQVVELAKALNVVGLMNTQF 841

Query: 249 LF---DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
                D  +  ++ LE+N +   T     P ++   G    ++
Sbjct: 842 AIQSSDEGADTIYLLEVNPRASRT----VPFVSKATGMPLAKI 880


>gi|127513501|ref|YP_001094698.1| carbamoyl-phosphate synthase L chain, ATP-binding [Shewanella
           loihica PV-4]
 gi|126638796|gb|ABO24439.1| 3-methylcrotonoyl-CoA carboxylase, alpha subunit [Shewanella
           loihica PV-4]
          Length = 677

 Score = 69.8 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 42/226 (18%), Positives = 80/226 (35%), Gaps = 24/226 (10%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       E   I +      A      K  +K ++    VP+ P    
Sbjct: 77  AIHPGYGFLSENADFARQCEQAGIAFVGPSADAIDAMGSKSAAKIIMEQANVPLVPGYHG 136

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGD 164
           +  + +    +   I  P +IK   GG   G+ +++ +      +       +SS+   D
Sbjct: 137 DDQSDEVLLKASKEIGFPQLIKAAYGGGGKGMRIVESESEALEAINSARREAASSFG-ND 195

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
           +LLIE+Y+     +   V  D   +   ++           K          PA  +   
Sbjct: 196 KLLIERYLRQPRHVEVQVFADTQGNCIYLSDRDCSIQRRHQK-----VVEEAPAPGLSDS 250

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFD----PLSRKVFWLEINV 264
           + + +   A  A +AI   G    +FL D      S   +++E+N 
Sbjct: 251 LRRAMGEAAVAAAKAIDYVGAGTVEFLLDTHATEESNSFYFMEMNT 296


>gi|322496021|emb|CBZ31093.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 665

 Score = 69.8 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 41/256 (16%), Positives = 90/256 (35%), Gaps = 30/256 (11%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H  +G   E+G  Q+ L    I +      +     DK+ SK++  S GV   P  + 
Sbjct: 81  AVHPGYGFLSENGEFQSALHKNNIIFVGPDAHSIEAMGDKIESKRLARSAGVTCIPGFIG 140

Query: 113 ---VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGDQ 165
               +   +     +  P +IK   GG   G+ V   D            ++ +  + D+
Sbjct: 141 EVKTHEDVLKFAREVGYPVMIKASGGGGGKGMRVAYNDNQCVEYYDMCKEEAKAAFNSDK 200

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           +L+E++++    +   V+ D   +   +   +        K             +     
Sbjct: 201 MLVEKFIENPRHIEIQVIADRRGNTLYLPERECSIQRRNQK----VIEEAPSVLLDAKTR 256

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI---FPEMAAYA 281
           K +   A    +A+        + + +P  ++ ++LE+N +       +    P      
Sbjct: 257 KAMGEEAVAMARAVQYVSAGTVENVVNPQ-KQFYFLEMNTR-------LQVEHPITEEIT 308

Query: 282 GYSFRELLLWMVEDAS 297
           G    +L+  M+  A+
Sbjct: 309 GI---DLVEQMLRAAA 321


>gi|163742942|ref|ZP_02150326.1| carbamoyl-phosphate synthase large subunit [Phaeobacter
           gallaeciensis 2.10]
 gi|161383906|gb|EDQ08291.1| carbamoyl-phosphate synthase large subunit [Phaeobacter
           gallaeciensis 2.10]
          Length = 1119

 Score = 69.8 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 49/270 (18%), Positives = 101/270 (37%), Gaps = 34/270 (12%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAI---- 71
           AL DAG++   I         D D S  L    L  +    +L     E+G +  +    
Sbjct: 607 ALTDAGYETIMINCNPETVSTDYDTSDRLYFEPLTFEHVMEILTKEL-ENGTLHGVIVQF 665

Query: 72  -----------LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTM 118
                      LE   IP   +   A  L+ D+ R + +V+  G+    + +   +   +
Sbjct: 666 GGQTPLKLANALEEEGIPILGTSPDAIDLAEDRERFQALVNQLGLKQPHNGIASTDAQAL 725

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           +    I  P VI+P        + +++    +   + ++   +    +L++ Y+ G    
Sbjct: 726 EIAEEIGFPLVIRPSYVLGGRAMEIVRDMDQLRRYIAEAVVVSGDSPVLLDSYLSG---A 782

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELK-YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
             +  DA  D TE+ V     +  E   +S  ++  + P  +  ++  EV+       +A
Sbjct: 783 VELDVDAICDGTEVHVAGIMQHIEEAGVHSGDSACSLPPYSLSKEVIAEVKTQTNALAKA 842

Query: 238 IGCRGISRSDFLFDPLSRK---VFWLEINV 264
           +   G+    F   P +     ++ +E+N 
Sbjct: 843 LNVVGLMNIQFAVKPDTDGKDVIYLIEVNP 872



 Score = 49.0 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 42/291 (14%), Positives = 96/291 (32%), Gaps = 48/291 (16%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D                V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPGLADATYIEPITPEVVAKIIEKERPDALLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G  G +  +      +L   ++    +   A  ++ D+   ++ +   G+    + +
Sbjct: 89  TMGGQTGLNTALALEEMGVLAKFDVEMIGAKREAIEMAEDRKLFREAMDRLGLENPRATI 148

Query: 113 VN---------------RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
           +                +  +D    I  P +I+P       G  V    +         
Sbjct: 149 ITAPKKDNGNADLDAGVQMALDELEDIGLPAIIRPAFTLGGTGGGVAYNREDYIHFCRSG 208

Query: 158 SSWNHGDQLLIEQYVDG-IELTCGVMGDASL-DVTEIAVPKSDFYSYELKYSSLNSTHVL 215
              +  +Q+L+++ + G  E    V+ D +   +   ++   D           +S  V 
Sbjct: 209 MDASPVNQILVDESLLGWKEYEMEVVRDTADNAIIVCSIENIDPMGVHT----GDSITVA 264

Query: 216 PA-KIPLDIYKEVQRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           PA  +    Y+ ++  +    + IG   G S   +  +P   ++  +E+N 
Sbjct: 265 PALTLTDKEYQMMRSASIAVLREIGVETGGSNVQWAVNPADGRMVVIEMNP 315


>gi|76811205|ref|YP_333553.1| argininosuccinate lyase [Burkholderia pseudomallei 1710b]
 gi|76580658|gb|ABA50133.1| argininosuccinate lyase domain protein [Burkholderia pseudomallei
           1710b]
          Length = 914

 Score = 69.8 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 46/234 (19%), Positives = 87/234 (37%), Gaps = 29/234 (12%)

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYVIKP 132
           L +P   +   A     DK R  + +   GV V  + +V+  T   D  H  + P V+KP
Sbjct: 111 LGLP--AADPEAIRTCRDKGRLHRRLRDAGVGVADTEIVSERTQLRDLAHGATYPRVLKP 168

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ-------LLIEQYVDGIELTCGVMGDA 185
             G  S+G+ +++    +     +       ++       +L++ +VDG E +  V+G  
Sbjct: 169 AFGSGSVGVRLVRTPAEMLAHGERMLDARGNERGIALARQVLVQSFVDGPEFSVEVVGLG 228

Query: 186 S---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR- 241
           +     V  +         +      + + H  PA I       +      A  A+G R 
Sbjct: 229 AEHGHAVLGVTGKHLGPLPH-----FVEAGHDFPAPIAAAQRDAIVAETLRALDAVGHRF 283

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA-YAGYSFRELLLWMVE 294
           G +  +        KV  +EIN +       + P+      G    ++L  M++
Sbjct: 284 GPAHVECRV--SDGKVVVIEINPR---LAGGMIPQAIEWATGV---DVLGAMID 329


>gi|330835784|ref|YP_004410512.1| acetyl/propionyl-CoA carboxylase [Metallosphaera cuprina Ar-4]
 gi|329567923|gb|AEB96028.1| acetyl/propionyl-CoA carboxylase [Metallosphaera cuprina Ar-4]
          Length = 510

 Score = 69.8 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 32/219 (14%), Positives = 71/219 (32%), Gaps = 16/219 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+      +E   I Y            DK+  K++    GVP+ P    
Sbjct: 79  AIHPGYGFLSENADFVEAVEKAGITYIGPSADVMRKIKDKLDGKRIAVQAGVPIAPGSDG 138

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS-----SWNHGD 164
            +      +     I  P ++K   GG  +GI  I     +     ++      ++   D
Sbjct: 139 PVSSIDEALKLAERIGYPIMVKAASGGGGVGITKIDSPDQLIDAWERNKRLATQAFGKSD 198

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             + +  V+   +   ++GD   +       +        K             I ++  
Sbjct: 199 LYIEKAAVNPRHIEFQLIGDKYGNYVVAWERECTIQRRNQK----LIEEAPSPAITMEER 254

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            ++          +    +   + +F   +R+ ++LE+N
Sbjct: 255 SKMFEPIMKYGHILNYFTLGTFETVFSDATREFYFLELN 293


>gi|227496155|ref|ZP_03926461.1| biotin carboxylase [Actinomyces urogenitalis DSM 15434]
 gi|226834300|gb|EEH66683.1| biotin carboxylase [Actinomyces urogenitalis DSM 15434]
          Length = 617

 Score = 69.8 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 37/217 (17%), Positives = 80/217 (36%), Gaps = 15/217 (6%)

Query: 57  VLHGNFG----EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV-PVC--- 108
            +H  +G    +D   QA+++   + +      A     DKM ++      GV PV    
Sbjct: 85  AIHPGYGFLAEDDAFAQAVID-AGLIWVGPSPSAMRALGDKMTARATAERAGVAPVPGIT 143

Query: 109 PSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168
            S+      +   H    P  +K   GG   GI V+  D  +       ++ + G  L++
Sbjct: 144 DSVTSASVVLAFAHAHGYPVALKRTDGGGGRGITVLANDDEVRATPAFEAAASGGATLIL 203

Query: 169 EQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227
           E+++     +    + DA      ++           K             +P  +++ +
Sbjct: 204 ERFITAARHVETQCVRDARGAFAVVSTRDCTLQRRNQKLL----EEAPAPFLPAGLHERL 259

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              +     ++G  G++  +FL      ++++LE+N 
Sbjct: 260 VEDSRRLLDSVGYVGVATCEFLLTSQD-ELYFLEVNP 295


>gi|261378478|ref|ZP_05983051.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Neisseria
           cinerea ATCC 14685]
 gi|269145273|gb|EEZ71691.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Neisseria
           cinerea ATCC 14685]
          Length = 453

 Score = 69.8 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 79/222 (35%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---S 110
            +H  +G   E+      +E     +         L  DK+ +K  +   GVP  P    
Sbjct: 77  AIHPGYGFLAENANFAEQVEQSGFIFIGPKADTIRLMGDKVSAKHAMIEAGVPCVPGSDG 136

Query: 111 ILVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
            L +     +     +  P +IK   GG   G+ V++K + +   +     ++ +     
Sbjct: 137 ALPDDGEEILKIADKVGYPVIIKASGGGGGRGMRVVEKKEDLLQSVEMTKAEAGAAFGNP 196

Query: 165 QLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+Y+     +   V+ D   +   +A           K          PA  I   
Sbjct: 197 MVYMERYLQRPRHVEIQVIADEHGNAIYLAERDCSMQRRHQK-----VIEEAPAPFITEK 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              ++ +    A + IG RG    +FL+     + F++E+N 
Sbjct: 252 ERAKIGKACADACKRIGYRGAGTFEFLY--EDGEFFFIEMNT 291


>gi|73989252|ref|XP_534175.2| PREDICTED: similar to propionyl-Coenzyme A carboxylase, alpha
           polypeptide precursor isoform 2 [Canis familiaris]
          Length = 731

 Score = 69.8 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 73/221 (33%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      L   ++ +      A     DK+ SK +     V   P    
Sbjct: 138 AVHPGYGFLSENKEFAKCLAAEDVVFIGPDTHAIHAMGDKIESKLLAKKAKVNTIPGFDG 197

Query: 112 LVNRFTMDS--QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGD 164
           +V            I  P +IK   GG   G+ +   D+             +SS+   D
Sbjct: 198 VVKDADEAVRIAREIGYPVMIKASAGGGGKGMRIAWDDEETRDGFRFSSQEAASSFG-DD 256

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           +LLIE+++D    +   V+GD   +   +   +        K             +    
Sbjct: 257 RLLIEKFIDNPRHIEIQVLGDKHGNALWLNERECSIQRRNQK----VVEEAPSIFLDSKT 312

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +   A    +A+        +FL D      ++LE+N 
Sbjct: 313 RRAMGEQAVALAKAVKYSSAGTVEFLVDSKKN-FYFLEMNT 352


>gi|254432413|ref|ZP_05046116.1| carbamoyl-phosphate synthase, large subunit [Cyanobium sp. PCC
           7001]
 gi|197626866|gb|EDY39425.1| carbamoyl-phosphate synthase, large subunit [Cyanobium sp. PCC
           7001]
          Length = 1113

 Score = 69.8 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 66/324 (20%), Positives = 108/324 (33%), Gaps = 61/324 (18%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL   G++V  +         D D              V  V+A  KPD    
Sbjct: 29  SGTQACKALRAEGYEVVLVNSNPASIMTDPDMADRTYIEPLTPEVVARVIAIEKPDALLP 88

Query: 57  VLHG--------NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
            + G           E+G     L    +    + + A   + D+   KQ +   GV VC
Sbjct: 89  TMGGQTALNLAVTLAENGT----LAEFGVELIGADLEAIRKAEDRQLFKQAMEKIGVAVC 144

Query: 109 PSILVNRFTMDSQ---HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
           PS + N           + S P +I+P       G  +    +            +   Q
Sbjct: 145 PSGIANNLEEAEAVGDAIGSYPRIIRPAFTLGGSGGGIAYNPEEFRAFCKSGLEASPVSQ 204

Query: 166 LLIEQYVDG-IELTCGVMGDASL-DVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
           +LIEQ + G  E    VM D +   V   ++   D           +S  V PA+ +   
Sbjct: 205 ILIEQSLLGWKEFELEVMRDTADNVVIVCSIENLDPMGVHT----GDSITVAPAQTLTDR 260

Query: 223 IYKEVQRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV-----------QPGMTP 270
            Y+ ++  +    + IG   G S   F  +P +  V  +E+N              G   
Sbjct: 261 EYQRLRDQSIAIIREIGVDTGGSNIQFAINPANGDVVVIEMNPRVSRSSALASKATGF-- 318

Query: 271 VSIFPEMAA--YAGYSFRELLLWM 292
                ++AA    GY+  E++  +
Sbjct: 319 --PIAKLAARLAVGYTLDEIINDI 340



 Score = 52.4 bits (125), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 28/226 (12%), Positives = 73/226 (32%), Gaps = 28/226 (12%)

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGSS 138
            +   +   + D+ + + ++    +    + L       +     +  P V++P      
Sbjct: 687 GTSPQSIDTAEDREQFEAILRRLDIRQPRNGLARSEEEALAVAERVGYPVVVRPSYVLGG 746

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD---------GIELTCGVMGDASLDV 189
             + V+   Q +   + ++ +      +LI+QY++           + T  V+    ++ 
Sbjct: 747 RAMEVVFNVQELKRYMAEAVNVEPDHPVLIDQYLENAVEVDVDALCDATGTVLIGGVMEH 806

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF- 248
            E A   S            ++  +    +       ++  +     A+  RG+    F 
Sbjct: 807 IEPAGIHSG----------DSACCLPTVSLGEAGLATIRAWSKALALALDVRGLINLQFA 856

Query: 249 --LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
                    +VF +E N +   T     P +A   G    ++   +
Sbjct: 857 VQRTAEGEERVFIIEANPRASRT----VPFVAKATGVPLAKVASRL 898


>gi|146074828|ref|XP_001462618.1| carboxylase [Leishmania infantum JPCM5]
 gi|134066696|emb|CAM65156.1| putative carboxylase [Leishmania infantum JPCM5]
          Length = 665

 Score = 69.8 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 41/256 (16%), Positives = 90/256 (35%), Gaps = 30/256 (11%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H  +G   E+G  Q+ L    I +      +     DK+ SK++  S GV   P  + 
Sbjct: 81  AVHPGYGFLSENGEFQSALHKNNIIFVGPDAHSIEAMGDKIESKRLARSAGVTCIPGFIG 140

Query: 113 ---VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGDQ 165
               +   +     +  P +IK   GG   G+ V   D            ++ +  + D+
Sbjct: 141 EVKTHEDVLKFAREVGYPVMIKASGGGGGKGMRVAYNDNQCVEYYDMCKEEAKAAFNSDK 200

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           +L+E++++    +   V+ D   +   +   +        K             +     
Sbjct: 201 MLVEKFIENPRHIEIQVIADRRGNTLYLPERECSIQRRNQK----VIEEAPSVLLDAKTR 256

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI---FPEMAAYA 281
           K +   A    +A+        + + +P  ++ ++LE+N +       +    P      
Sbjct: 257 KAMGEEAVAMARAVQYVSAGTVENVVNPQ-KQFYFLEMNTR-------LQVEHPITEEIT 308

Query: 282 GYSFRELLLWMVEDAS 297
           G    +L+  M+  A+
Sbjct: 309 GI---DLVEQMLRAAA 321


>gi|113475629|ref|YP_721690.1| cyanophycin synthetase [Trichodesmium erythraeum IMS101]
 gi|110166677|gb|ABG51217.1| cyanophycin synthetase [Trichodesmium erythraeum IMS101]
          Length = 902

 Score = 69.8 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 49/118 (41%), Gaps = 4/118 (3%)

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---DSQHLISPPYVIKPLKGGSSL 139
           GIL   L+ DK  +K+++   GVPV    +   F       +++   P VIKPL G    
Sbjct: 210 GILGVELACDKEGTKRILKDAGVPVPRGTVARYFDELQDAIEYVGGYPIVIKPLDGNHGR 269

Query: 140 GIIV-IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK 196
           GI + +K  Q        +   +    +++E+Y  G +    V+    + V E     
Sbjct: 270 GITIDVKNWQEAEEAYDLARKASKTKTVIVERYYTGKDHRVLVVNGKVVAVAERVPAH 327


>gi|239830880|ref|ZP_04679209.1| carbamoyl-phosphate synthase L chain ATP-binding [Ochrobactrum
           intermedium LMG 3301]
 gi|239823147|gb|EEQ94715.1| carbamoyl-phosphate synthase L chain ATP-binding [Ochrobactrum
           intermedium LMG 3301]
          Length = 659

 Score = 69.8 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 40/225 (17%), Positives = 76/225 (33%), Gaps = 22/225 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      +E   + +      A      K  +K ++   GVPV P    
Sbjct: 77  AIHPGYGFLSENAGFVDAVEAAGLTFIGPSARAIRAMGLKDAAKALMEKAGVPVVPGYHG 136

Query: 114 NRFT----MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
           +             I+ P +IK   GG   G+  + +       L     ++ +      
Sbjct: 137 DNQDGAFLKSEADRITYPVLIKARAGGGGKGMRRVDQPDDFAAALDSARREAEASFGDGA 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           +L+E+Y+     +   V GD+  +               L+          PA  +  ++
Sbjct: 197 VLVEKYLAKPRHIEVQVFGDSHGNAV-----HLFERDCSLQRRHQKVIEEAPAPGMMPEM 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR----KVFWLEINV 264
              +   A  A  AIG  G    +F+ D        + F++E+N 
Sbjct: 252 RAAMGEAAVKAALAIGYCGAGTVEFIADVSEGLRPDRFFFMEMNT 296


>gi|226197153|ref|ZP_03792730.1| putative lyase [Burkholderia pseudomallei Pakistan 9]
 gi|225930532|gb|EEH26542.1| putative lyase [Burkholderia pseudomallei Pakistan 9]
          Length = 947

 Score = 69.8 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 46/234 (19%), Positives = 87/234 (37%), Gaps = 29/234 (12%)

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYVIKP 132
           L +P   +   A     DK R  + +   GV V  + +V+  T   D  H  + P V+KP
Sbjct: 97  LGLP--AADPEAIRTCRDKGRLHRRLRDAGVGVADTEIVSERTQLRDLAHGATYPRVLKP 154

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ-------LLIEQYVDGIELTCGVMGDA 185
             G  S+G+ +++    +     +       ++       +L++ +VDG E +  V+G  
Sbjct: 155 AFGSGSVGVRLVRTPAEMLAHGERMLDARGNERGIALARQVLVQSFVDGPEFSVEVVGLG 214

Query: 186 S---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR- 241
           +     V  +         +      + + H  PA I       +      A  A+G R 
Sbjct: 215 AEHGHAVLGVTGKHLGPLPH-----FVEAGHDFPAPIAAAQRDAIVAETLRALDAVGHRF 269

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA-YAGYSFRELLLWMVE 294
           G +  +        KV  +EIN +       + P+      G    ++L  M++
Sbjct: 270 GPAHVECRV--SGGKVVVIEINPR---LAGGMIPQAIEWATGV---DVLGAMID 315


>gi|254491827|ref|ZP_05105006.1| carbamoyl-phosphate synthase, large subunit [Methylophaga
           thiooxidans DMS010]
 gi|224463305|gb|EEF79575.1| carbamoyl-phosphate synthase, large subunit [Methylophaga
           thiooxydans DMS010]
          Length = 1072

 Score = 69.8 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 48/278 (17%), Positives = 100/278 (35%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G++V  +         D +            ++V  V+   +PD    
Sbjct: 29  SGAQACKALKEEGYRVILVNSNPATIMTDPNMADATYIEPVNWQAVSKVIEAERPDAILP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      ILE   +    +   A   + D+   +  +   G+ +  S +
Sbjct: 89  TMGGQTALNCALDLEKHGILEKFGVEMIGADSEAINKAEDRDLFRAAMRKIGLDMPKSDI 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     ++ Q     P +I+P       G  +    Q       +    +   +LLIE+
Sbjct: 149 AHTLDEALEVQGQFGFPVIIRPSFTMGGSGGGIAYNKQDFIEICQRGLYLSPTSELLIEE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D   +   I   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SIIGWKEYEMEVVRDRKDNCIIICSIEN----FDPMGVHTGDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P S ++  +E+N 
Sbjct: 265 RNASLAVLREIGVDTGGSNVQFAVNPESGRLIIIEMNP 302



 Score = 64.4 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/196 (14%), Positives = 75/196 (38%), Gaps = 8/196 (4%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ--HLISPPYV 129
           LE   +P   +   A   + D+ R +Q+V    +   P+ L +           I  P V
Sbjct: 653 LEAAGVPIIGTSPDAIDHAEDRERFQQMVDKLNLLQPPNRLAHSADTAVALASEIGYPLV 712

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  +  +   +  +   ++   +L+++++ D IE+    + D    
Sbjct: 713 VRPSYVLGGRAMEIVYNEDELQRYMQNAVKVSNDSPVLLDRFLDDAIEVDVDAICDGKEV 772

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           +    +   +       +S  ++  + P  +   I  +++         +G +G+  + F
Sbjct: 773 LIGGIMEHIEQAGV---HSGDSACAIPPYSLSNAIQDKLREQVRQMALELGVKGLMNTQF 829

Query: 249 LFDPLSRKVFWLEINV 264
                  +++ LE+N 
Sbjct: 830 AI--KGDEIYILEVNP 843


>gi|239815598|ref|YP_002944508.1| carbamoyl-phosphate synthase, large subunit [Variovorax paradoxus
           S110]
 gi|239802175|gb|ACS19242.1| carbamoyl-phosphate synthase, large subunit [Variovorax paradoxus
           S110]
          Length = 1082

 Score = 69.8 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 30/217 (13%), Positives = 83/217 (38%), Gaps = 11/217 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF--TMDSQHLISPPYV 129
           LE   +P   +       + D+ R ++++   G+   P+         ++    +  P V
Sbjct: 655 LEANGVPIIGTSPDMIDAAEDRERFQKLLHELGLRQPPNATARTEPEALEKAAALGYPLV 714

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++ + + +   + ++   ++   +L+++++ D +E     + DA   
Sbjct: 715 VRPSYVLGGRAMEIVHEQRDLERYMREAVKVSNDSPVLLDRFLNDAVECDVDCIRDAEGQ 774

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                V +    +    +S  ++  + P  +  +   E++R +     A+   G+    F
Sbjct: 775 TLIGGVMEHIEQAGV--HSGDSACSLPPYSLSAETIAELKRQSAAMAAALNVVGLMNVQF 832

Query: 249 LFDPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGY 283
                  K  ++ LE+N +   T     P ++   G 
Sbjct: 833 AIQQKDGKDVIYVLEVNPRASRT----VPYVSKATGI 865



 Score = 56.3 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 50/285 (17%), Positives = 101/285 (35%), Gaps = 42/285 (14%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  I              DV        ++V  ++A  +PD    
Sbjct: 29  SGVQACKALREEGYKVILINSNPATIMTDPATADVTYIEPITWQTVEKIIAKERPDAILP 88

Query: 57  VLHGNFGEDGLV----QAILELL-----EIPY--THSGILASALSMDKMRSKQVVSSCGV 105
            + G    +  +      +L+         P     +   A   + D+++ K  ++  G+
Sbjct: 89  TMGGQTALNCALDLWRHGVLDKYTGAATNKPVELIGATPEAIDKAEDRLKFKDAMTKIGL 148

Query: 106 PVCPSILVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
               S + +        Q  +  P VI+P       G  +    +       +    +  
Sbjct: 149 GSARSGIAHSMDEAWAVQKSVGFPTVIRPSFTLGGTGGGIAYNPEEFETICKRGIEASPT 208

Query: 164 DQLLIEQYVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IP 220
           ++LLIE+ + G  E    V+ D + + +   ++   D           +S  V PA+ + 
Sbjct: 209 NELLIEESLLGWKEYEMEVVRDKADNCIIVCSIENLDPMGVHT----GDSITVAPAQTLS 264

Query: 221 LDIYKEVQRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
              Y+ ++  +    + IG   G S   F  +P   ++  +E+N 
Sbjct: 265 DKEYQILRNASLAVLREIGVDTGGSNVQFSINPKDGRMVVIEMNP 309


>gi|27379532|ref|NP_771061.1| 3-methylcrotonyl-CoA carboxylase subunit alpha [Bradyrhizobium
           japonicum USDA 110]
 gi|27352684|dbj|BAC49686.1| 3-methylcrotonyl-CoA carboxylase alpha subunit [Bradyrhizobium
           japonicum USDA 110]
          Length = 687

 Score = 69.8 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 78/220 (35%), Gaps = 18/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+           + +             K  SK ++   GVP+ P    
Sbjct: 101 AVHPGYGFLSENAEFAHACLDAGLVFVGPTAGMMTAMGSKSGSKALMEKAGVPLVPGYHG 160

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
                     + + I  P ++K   GG   G+ +++    +   ++    ++ +    D+
Sbjct: 161 EAQDEATLAKAANQIGFPILVKASAGGGGRGMRIVRSAAELGPAIVSAKREAKAAFGDDR 220

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           +LIE+YVD    +   ++GD+  ++  +   +        K             +     
Sbjct: 221 MLIEKYVDNPRHIEVQIIGDSHGNLLSLFERECTLQRRHQK----VIEEAPSPTLNAAQR 276

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + V   A  A  A+   G    +F+ D     VF++E+N 
Sbjct: 277 ETVCAAARKAAGAVNYVGAGTIEFVSDGKD--VFFIEMNT 314


>gi|317049789|ref|YP_004117437.1| acetyl-CoA carboxylase, biotin carboxylase [Pantoea sp. At-9b]
 gi|316951406|gb|ADU70881.1| acetyl-CoA carboxylase, biotin carboxylase [Pantoea sp. At-9b]
          Length = 448

 Score = 69.8 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 78/222 (35%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+      +E     +         L  DK+ +   +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAEQVERSGFIFIGPKADTIRLMGDKVSAITAMKKAGVPTVPGSDG 136

Query: 111 --ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
                          I  P +IK   GG   G+ V++ D+ +   +     ++ +  + D
Sbjct: 137 PLTEDMDKNRAFAKRIGYPVIIKASGGGGGRGMRVVRSDKDLEQSINMTKAEAKAAFNND 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+Y++    +   VM D   +   +A           K          PA  I  +
Sbjct: 197 MVYMEKYLENPRHIEIQVMADGQGNAIYLAERDCSMQRRHQK-----VVEEAPAPGITPE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +   +      A   IG RG    +FLF   + + +++E+N 
Sbjct: 252 LRSFIGDRCAKACVDIGYRGAGTFEFLF--ENGEFYFIEMNT 291


>gi|303327367|ref|ZP_07357808.1| carbamoyl-phosphate synthase, large subunit [Desulfovibrio sp.
           3_1_syn3]
 gi|302862307|gb|EFL85240.1| carbamoyl-phosphate synthase, large subunit [Desulfovibrio sp.
           3_1_syn3]
          Length = 1080

 Score = 69.8 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 98/278 (35%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G++V  +         D               ++  ++   +PD    
Sbjct: 29  SGSQAVKALKEEGYEVVLVNSNPATIMTDPQMADATYVEPIEQDTLAAIIRKERPDALLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G    +  +      +L    +    +       +  +   ++ + + G+ +  S +
Sbjct: 89  TLGGQTALNAALGLAKSGVLSECGVELIGARAEVIEKAESRELFREAMENIGLKMPASGI 148

Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                   +  +++  P +++P       G  V    + +     +  S +   +++IEQ
Sbjct: 149 ARNLDDVRRLGNVLPFPLIVRPAFTLGGTGGGVAYNLEDLEEVAARGLSASPTSEVMIEQ 208

Query: 171 YVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            V G  E+   VM D   + V   ++   D           +S  V P + +    Y+++
Sbjct: 209 SVLGWKEIEMEVMRDQKDNCVIICSIENFDPMGVHT----GDSITVAPVQTLSDMEYQKI 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  DP +  +  +E+N 
Sbjct: 265 RDASIAIMREIGVETGGSNVQFGVDPANGDIVVIEMNP 302



 Score = 54.7 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 47/262 (17%), Positives = 88/262 (33%), Gaps = 27/262 (10%)

Query: 25  ALEDAGF---------KVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ------ 69
           AL DAG          +    D D S  L    L  +   N++     E  +VQ      
Sbjct: 592 ALRDAGIMAIMANSNPETVSTDYDTSDRLYFEPLTFEDVMNIVEKEKPEGVIVQFGGQTP 651

Query: 70  ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHL 123
                 L    +P   +   A   + D+ R + ++   G+   P+         ++    
Sbjct: 652 LNLAVPLMRAGVPILGTSPDAIDRAEDRERFQALIQKLGLLQPPNGTAMDLEEALEVAER 711

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I+ P V++P        + V+     +     +         +LI+++++       V  
Sbjct: 712 ITYPVVVRPSYVLGGRAMAVVYDAAELADYFREQVPEKPEHPILIDKFLE---HAVEVDV 768

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRG 242
           DA  D  E+ V     +  E    S +S  VLP+  +  D    +   A    + +   G
Sbjct: 769 DALSDGREVYVAGIMEHIEEAGIHSGDSACVLPSFSLSYDHVALIAAQAEALARELRVVG 828

Query: 243 ISRSDFLFDPLSRKVFWLEINV 264
           +    F        ++ LE+N 
Sbjct: 829 LMNIQFAI--KGDDIYILEVNP 848


>gi|254453078|ref|ZP_05066515.1| biotin carboxylase [Octadecabacter antarcticus 238]
 gi|198267484|gb|EDY91754.1| biotin carboxylase [Octadecabacter antarcticus 238]
          Length = 461

 Score = 69.8 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 74/220 (33%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E       +E   I +            DK+ +++   + GVPV P    
Sbjct: 78  AVHPGYGFLSESPEFAHAIESAGITFVGPTAATIERMGDKVEARKAAEAAGVPVVPGSKG 137

Query: 114 NRFTMDSQHLI----SPPYVIKPLKGGSSLGIIVIKKDQSI-----PLDLLQSSSWNHGD 164
              T+D    I      P +IK   GG   GI V   +  +            +++  G 
Sbjct: 138 RIETVDDAAQIASDIGYPVMIKAAAGGGGRGIRVADNEGELRSLAPQAQAEAEAAFGDGG 197

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             L         +   ++GD + +       +        K             +  +  
Sbjct: 198 LYLERAVRSPRHIEVQILGDGT-NAVHCFERECSLQRRRQK----VWEEAGAVCLDEETR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + + + A    +A+  RG    ++L+D  + + F++E+N 
Sbjct: 253 QTLCKSAVALAKAVNYRGAGTLEYLYDEATNEFFFIEMNT 292


>gi|167042779|gb|ABZ07498.1| putative carbamoyl-phosphate synthase L chain, ATP binding domain
           protein [uncultured marine microorganism
           HF4000_ANIW137G21]
          Length = 448

 Score = 69.8 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 40/241 (16%), Positives = 84/241 (34%), Gaps = 19/241 (7%)

Query: 33  VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
            S +D+  ++      +  D      +G   E+ +    L    I +      A  +  D
Sbjct: 61  ASYLDI-EAIVAAAKEVGADAVHPG-YGFLAENPIFAERLAAEGITFIGPSPEALRILGD 118

Query: 93  KMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQ 148
           K+ +++ +S  G+P+       I            I  P +IK   GG  +G+ V+    
Sbjct: 119 KITAREAMSRAGLPIAKGSPGPISDPEEASQIADEIGFPIIIKAAAGGGGIGMQVVNSAD 178

Query: 149 SIPLDLLQSSSWNH----GDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYE 203
                L             D++ +E++++G   +   V+GD + D               
Sbjct: 179 EFESALKLCQGRARSAFGDDRVFLEKFIEGAQHIEFQVLGDGT-DAIHFGERFCSIQRRH 237

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            K             +  +I  ++        +A+G +G++  +F     S   ++LE+N
Sbjct: 238 QKILEEG------PWLSEEIRADIGARVVAGAKAVGYKGLATFEF-LRDSSGDFYFLEVN 290

Query: 264 V 264
            
Sbjct: 291 P 291


>gi|188588895|ref|YP_001919509.1| carbamoyl phosphate synthase large subunit [Clostridium botulinum
           E3 str. Alaska E43]
 gi|226700924|sp|B2UX86|CARB_CLOBA RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|188499176|gb|ACD52312.1| carbamoyl-phosphate synthase, large subunit [Clostridium botulinum
           E3 str. Alaska E43]
          Length = 1069

 Score = 69.8 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 29/216 (13%), Positives = 78/216 (36%), Gaps = 12/216 (5%)

Query: 67  LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV--PVCPSILVNRFTMDSQHLI 124
            +   L+   I    +      ++ D+ +  +++    +  P    I      ++    +
Sbjct: 644 KLANFLKEKNIKTLGTTADQIDMAEDREKFDELLERLDISRPKGKGIWSVEEGLEEAERL 703

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
             P +++P       G+ +   ++ +   L  + + +  + +LI++Y+ G E+    + D
Sbjct: 704 GFPVLVRPSYVIGGQGMEITHDEEELTFYLTNAFAKDKKNPILIDKYLMGREIEVDAISD 763

Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244
               +    +   +       +S  + T      +   I  ++         AIG +G+ 
Sbjct: 764 GENILIPGIMEHLERAGV---HSGDSVTMYPSQNVCDKIKGKILEYTKKLALAIGIKGMI 820

Query: 245 RSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFP 275
              F+       ++ +E+N       P ++ VS  P
Sbjct: 821 NIQFI--EFEGSLYVIEVNPRASRTVPYISKVSGVP 854



 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 61/318 (19%), Positives = 117/318 (36%), Gaps = 45/318 (14%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQID-------VDRSVGL--------------V 45
           G ++E + S   G     AL+  G +V  I+        D+ V                V
Sbjct: 21  GQAAEFDYS---GTQACEALKSEGVEVVLINSNPATIMTDKEVADKVYLEPLTLEFIEKV 77

Query: 46  LAHLKPDLAFNVLHGNFGEDG-------LVQAILELLEIPYTHSGILASALSMDKMRSKQ 98
           +A  KPD   ++L G  G+ G           IL+   +    + I +     D+   + 
Sbjct: 78  IAKEKPD---SLLAGMGGQTGLNLAVELHDAGILDKYNVKVIGTSIESIKEGEDRELFRD 134

Query: 99  VVSSCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
           +++  G PV  S +V      +D  + I  P +++P       G  +   ++ +   L  
Sbjct: 135 MMNRIGEPVIKSEIVTDLQAGIDFANKIGYPVIVRPAYTLGGSGGGIADDEEELRTILES 194

Query: 157 SSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215
               +   Q+L+E+ V G  E+   VM D            +      +   + +S  V 
Sbjct: 195 GLQLSTIGQVLLEKSVKGWKEIEYEVMRD---SYGNCITVCNMENIDPVGIHTGDSIVVA 251

Query: 216 PAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274
           P++ +    Y+ ++  +     A+G  G     F  +P + +   +EIN  P ++  S  
Sbjct: 252 PSQTLSDKEYQMLRTASINIINAVGIEGGCNVQFSLNPNTFEYAVIEIN--PRVSRSS-- 307

Query: 275 PEMAAYAGYSFRELLLWM 292
              +   GY   +L   +
Sbjct: 308 ALASKATGYPIAKLAAKI 325


>gi|118466401|ref|YP_880342.1| carbamoyl-phosphate synthase L subunit [Mycobacterium avium 104]
 gi|118167688|gb|ABK68585.1| Carbamoyl-phosphate synthase L chain, ATP binding domain
           [Mycobacterium avium 104]
          Length = 663

 Score = 69.8 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 41/218 (18%), Positives = 81/218 (37%), Gaps = 22/218 (10%)

Query: 58  LHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
           LH  +G   E+      +    + +    + A      K+ SK+++++ GVPV     ++
Sbjct: 76  LHPGYGFLSENADFATAVADAGLTWVGPPVDAVRAMGSKIESKKLMAAAGVPV-----LD 130

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK----DQSIPLDLLQSSSWNHGDQLLIEQ 170
               D+      P ++K   GG   G+ V+ +       +     ++ S      +  E+
Sbjct: 131 ELDPDTVTEAQLPVLVKASAGGGGRGMRVVHELSALRGEVEAARREAQSAFGDPTVFCER 190

Query: 171 YV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI---PLDIYKE 226
           Y+  G  +   V+ DA   V  +   +        K          P+ +      +  +
Sbjct: 191 YLPTGHHVEVQVLADAHGTVWAVGERECSIQRRHQK-----IIEEAPSPLVERTPGMRAK 245

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +   A LA   IG  G    +FL D    + ++LE+N 
Sbjct: 246 LFEAARLAAGVIGYTGAGTVEFLAD-DDGEFYFLEMNT 282


>gi|325527059|gb|EGD04486.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia sp.
           TJI49]
          Length = 404

 Score = 69.8 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 52/278 (18%), Positives = 98/278 (35%), Gaps = 40/278 (14%)

Query: 19  GKACASALEDAGFKVSQID----------------VDRSVGLVLAHL----KPDLAFNVL 58
           GK    AL+  G +V  +D                +D + G  L  L    +P L    +
Sbjct: 27  GKEVIIALQRLGVEVVAVDRYPDAPGHQVAHRAHVIDMTDGAALRALVEAERPHLIVPEI 86

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKM-RSKQVVSSCGVPVCPSILVNRFT 117
                 D L  A +E   +        A+ L+M++    +      G+P  P      F 
Sbjct: 87  EAI-ATDAL--AAIEAAGLAEVIPTARATQLTMNREGIRRLAAEELGLPTSPYAFAESFD 143

Query: 118 MDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH--GDQLLIEQYVD 173
             +  +  I  P V+KP+   S  G  V++ D  I      + +       ++++E ++D
Sbjct: 144 AFAAAVAKIGMPCVVKPVMSSSGKGQSVVRTDADIKPAWDYAMAGGRVNHGRVIVEGFID 203

Query: 174 ----GIELTCGVMGDASLDV-TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
                 +LT   +  A+LD  T    P           +        P  +      + +
Sbjct: 204 FEYEITQLTVRAIDPATLDTRTWFCEPVGHVQV-----AGDYVESWQPQPMSAAALAKSR 258

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
            +A    +A+G RG+   +         V++ E++ +P
Sbjct: 259 EIAHKVTEALGGRGLFGVELFVR--GDDVWFSEVSPRP 294


>gi|291521241|emb|CBK79534.1| carbamoyl-phosphate synthase large subunit [Coprococcus catus GD/7]
          Length = 1074

 Score = 69.8 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 52/312 (16%), Positives = 112/312 (35%), Gaps = 37/312 (11%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL+  G+++  +              DV          +  ++A  +PD    
Sbjct: 29  SGTQACKALKKLGYEIVLVNSNPATIMTDPETADVTYIEPLNVERLEEIIAKERPDALLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G  G +   +     IL+   +      + A     D++  K  +   G+ +  S +
Sbjct: 89  NLGGQSGLNLCAELNKAGILDKYHVKVIGVQVDAIERGEDRIEFKHAMDKLGIEMARSEV 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     +  P V++P       G  ++   + +     +    +   Q+L+E+
Sbjct: 149 AYSVEEALAIADKLDYPVVLRPAYTMGGAGGGLVYNKEELKTVCARGLQASLVGQVLVEE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQ 228
            + G  EL   V+ D   ++  +   ++      L   + +S    P   I  +  K +Q
Sbjct: 209 SILGWEELELEVVRDKDNNMITVCFIEN---IDPLGVHTGDSFCAAPMLTISEECQKRLQ 265

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
             A+   +++   G +   F  DP++ ++  +EIN +   T  S     +   G+    L
Sbjct: 266 EQAYKIVESVEVIGGTNVQFAHDPVTDRIIVIEINPR---TSRSS-ALASKATGFPIA-L 320

Query: 289 LLWMVEDASCLR 300
           +  M+     L+
Sbjct: 321 VSAMLATGLTLK 332



 Score = 63.6 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 29/201 (14%), Positives = 74/201 (36%), Gaps = 10/201 (4%)

Query: 68  VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLIS 125
           + A LE   +    +      L+ D+   + ++    +P+  S +       ++  + I 
Sbjct: 643 LAAELEKNGVKILGTAPAVIDLAEDRDLFRAMMEKLDIPMPESGMATTVDEALEIANKIG 702

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGD 184
            P +++P       G+ V+  D+S+   +  +        +LI+++++   E     + D
Sbjct: 703 YPVMVRPSYVLGGRGMEVVYDDESMAGYMAAAVGVTPDRPILIDRFLNHATECEADAISD 762

Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGI 243
            +       +   +           +S  +LP   I  +    ++       + +  RG+
Sbjct: 763 GTHAFVPAVMEHIELAGVHS----GDSACILPSVHISPENVATIKEYTRKIAEEMHVRGL 818

Query: 244 SRSDFLFDPLSRKVFWLEINV 264
              +  +   + KV+ LE N 
Sbjct: 819 --MNMQYAIENGKVYVLEANP 837


>gi|221310357|ref|ZP_03592204.1| acetyl-CoA carboxylase biotin carboxylase subunit [Bacillus
           subtilis subsp. subtilis str. 168]
 gi|221314681|ref|ZP_03596486.1| acetyl-CoA carboxylase biotin carboxylase subunit [Bacillus
           subtilis subsp. subtilis str. NCIB 3610]
 gi|221319604|ref|ZP_03600898.1| acetyl-CoA carboxylase biotin carboxylase subunit [Bacillus
           subtilis subsp. subtilis str. JH642]
 gi|221323880|ref|ZP_03605174.1| acetyl-CoA carboxylase biotin carboxylase subunit [Bacillus
           subtilis subsp. subtilis str. SMY]
 gi|255767543|ref|NP_390314.2| acetyl-CoA carboxylase biotin carboxylase subunit [Bacillus
           subtilis subsp. subtilis str. 168]
 gi|321311918|ref|YP_004204205.1| acetyl-CoA carboxylase biotin carboxylase subunit [Bacillus
           subtilis BSn5]
 gi|251757486|sp|P49787|ACCC1_BACSU RecName: Full=Biotin carboxylase 1; AltName: Full=Acetyl-CoA
           carboxylase subunit A 1; Short=ACC 1
 gi|225185171|emb|CAB14365.2| acetyl-CoA carboxylase subunit (biotin carboxylase subunit)
           [Bacillus subtilis subsp. subtilis str. 168]
 gi|291484876|dbj|BAI85951.1| acetyl-CoA carboxylase biotin carboxylase subunit [Bacillus
           subtilis subsp. natto BEST195]
 gi|320018192|gb|ADV93178.1| acetyl-CoA carboxylase biotin carboxylase subunit [Bacillus
           subtilis BSn5]
          Length = 450

 Score = 69.8 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 91/221 (41%), Gaps = 18/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     + E + + +      A +    K  +++ +   GVP+ P    
Sbjct: 77  AIHPGYGFLAENADFAELCEEVNVTFVGPSADAISKMGTKDVARETMKQAGVPIVPGSQG 136

Query: 111 ILVNRFTMDS-QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-----SSSWNHGD 164
           I+ N     S  + I  P +IK   GG   GI V + ++ +   +       ++++    
Sbjct: 137 IIENVEEAVSLANEIGYPVIIKATAGGGGKGIRVARTEEELINGIKITQQEAATAFG-NP 195

Query: 165 QLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            + IE+Y++    +   V+ D   +   +            K    + +   PA +  +I
Sbjct: 196 GVYIEKYIEDFRHVEIQVLADNYGNTIHLGERDCSIQRRLQKLLEESPS---PA-LDSEI 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +++   A  A +A+G  G    +F++D   ++ +++E+N 
Sbjct: 252 REQMGDAAVKAAKAVGYTGAGTVEFIYDYNEQRYYFMEMNT 292


>gi|70996328|ref|XP_752919.1| urea amidolyase [Aspergillus fumigatus Af293]
 gi|66850554|gb|EAL90881.1| urea amidolyase, putative [Aspergillus fumigatus Af293]
 gi|159131673|gb|EDP56786.1| urea amidolyase, putative [Aspergillus fumigatus A1163]
          Length = 1168

 Score = 69.8 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 27/202 (13%), Positives = 63/202 (31%), Gaps = 17/202 (8%)

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVI 130
             + +      +  +   K  ++++ +  GVP+ P     I      ++    +  P ++
Sbjct: 30  AGLVFVGPSPESIEVFGLKHTARELATKAGVPIVPGSPGLINNEHDAVEVAQKLGYPVML 89

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQ-----SSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
           K   GG  +G++    D  +            + + +    +   Y     +   V G+ 
Sbjct: 90  KATAGGGGMGLLTCNSDAEVRKSFATVKSRGEALFKNAGVFIERYYPASHHIEVQVFGNG 149

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI---PLDIYKEVQRLAFLAHQAIGCRG 242
                 I   +        K          P+        + K +   A    ++I    
Sbjct: 150 DGKAIFIGERECSIQRRHQK-----VIEECPSPFVSRKPGLRKSLGEAAVRLAESIKYGS 204

Query: 243 ISRSDFLFDPLSRKVFWLEINV 264
               ++L D  +   F+LE+N 
Sbjct: 205 AGTIEYLVDDETGAFFFLEMNT 226


>gi|308174229|ref|YP_003920934.1| acetyl-CoA carboxylase subunit (biotin carboxylase subunit)
           [Bacillus amyloliquefaciens DSM 7]
 gi|307607093|emb|CBI43464.1| acetyl-CoA carboxylase subunit (biotin carboxylase subunit)
           [Bacillus amyloliquefaciens DSM 7]
 gi|328554175|gb|AEB24667.1| acetyl-CoA carboxylase biotin carboxylase subunit [Bacillus
           amyloliquefaciens TA208]
 gi|328912567|gb|AEB64163.1| acetyl-CoA carboxylase subunit (biotin carboxylase subunit)
           [Bacillus amyloliquefaciens LL3]
          Length = 450

 Score = 69.8 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 88/221 (39%), Gaps = 18/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     + E + + +      A +    K  +++ +   GVP+ P    
Sbjct: 77  AIHPGYGFLAENADFAELCEEVNVTFVGPTADAISKMGTKDIARETMQLAGVPIVPGSKG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-----SSSWNHGD 164
            I      +     I  P +IK   GG   GI V + ++ +   +       ++++    
Sbjct: 137 IIKNTEEAVSLAREIGYPVIIKATAGGGGKGIRVARTEEEMIKGIEITQQEAATAFG-NP 195

Query: 165 QLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            + IE+Y++    +   V+ D   +   +            K    + +   PA +  +I
Sbjct: 196 GVYIEKYIEDFRHVEIQVLADNYGNTIHLGERDCSIQRRLQKLLEESPS---PA-LDSEI 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +++   A  A +A+G  G    +F++D   ++ +++E+N 
Sbjct: 252 REQMGEAAVKAAKAVGYTGAGTVEFIYDYREQRYYFMEMNT 292


>gi|302876837|ref|YP_003845470.1| carbamoyl-phosphate synthase, large subunit [Clostridium
           cellulovorans 743B]
 gi|307687522|ref|ZP_07629968.1| carbamoyl-phosphate synthase, large subunit [Clostridium
           cellulovorans 743B]
 gi|302579694|gb|ADL53706.1| carbamoyl-phosphate synthase, large subunit [Clostridium
           cellulovorans 743B]
          Length = 1076

 Score = 69.8 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 37/275 (13%), Positives = 89/275 (32%), Gaps = 30/275 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G +V  ++ +                      +   ++   +P     
Sbjct: 28  SGTQGCKALREEGIEVILLNSNPATIMTDFKVADRVYIEPMTLEACEEIIKKERPQGIIA 87

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G    +   Q     ILE   +    + +    ++ D+ + K+++     P+  S +
Sbjct: 88  TLGGQTALNLACQLSESGILEKYNVKLLGTSVETIEMAEDREKFKKLMEDIKEPMAESEI 147

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           V      ++    I  P +++P       G  +   ++ +        + +   Q+L+E+
Sbjct: 148 VTTIEAALNFAKTIGYPVIVRPAYTLGGTGGGIADNEEQLKEIAHSGIALSPIGQILVEK 207

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
            + G  E+   VM D+      I     +       ++  +        +  + Y  ++ 
Sbjct: 208 SLLGYKEIEYEVMRDSVGTCITIC--NMENIDPVGVHTGDSIVVAPTQTLNDEQYHLLRT 265

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +      +   G     F   P     + +E+N 
Sbjct: 266 ASLKIIDNLKIEGGCNVQFALSPYDNSYYVIEVNP 300



 Score = 59.8 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 46/303 (15%), Positives = 110/303 (36%), Gaps = 44/303 (14%)

Query: 22  CASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH--------GNFGE 64
           CA AL++ G +   I         D D S  L    L  +   N++           FG 
Sbjct: 575 CAMALKEMGIEAIMINNNPETVSTDFDTSDKLYFEPLTLESVLNIIEVEKPMGVIAQFGG 634

Query: 65  DGLVQ--AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV--PVCPSILVNRFTMDS 120
              +   A L+   +    +   +  ++ D+   +  +   G+  P+  + +       +
Sbjct: 635 QTSLNLVAGLQHFGVNILGTSTESLDIAEDRSSFEAFLEKLGIERPMGKTAVNLEEARTA 694

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ-LLIEQYVDGIELTC 179
              I  P +I+P        +++++  +     +  +      ++ +LI++Y++G E+  
Sbjct: 695 IKEIGFPALIRPSYVIGGEAMMIVRNQEQFEHYMSTALRVVSNEEPILIDKYIEGKEVEI 754

Query: 180 GVMG-----DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
             +G       +L V  I         +    S  + T   P  +   + +++Q+ +   
Sbjct: 755 DGIGAVTEKGYALKVIGIMEHIERAGIH----SGDSMTIYPPKNLSEVVLEKIQKYSRAI 810

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
              +   G+    ++      +V+ +E+N +   T     P  +   G +       +VE
Sbjct: 811 ADGLKVIGMINIQYVV--KDEQVYVIEVNPRASRT----VPIFSKATGVN-------VVE 857

Query: 295 DAS 297
           +A+
Sbjct: 858 EAT 860


>gi|197122523|ref|YP_002134474.1| carbamoyl phosphate synthase large subunit [Anaeromyxobacter sp. K]
 gi|196172372|gb|ACG73345.1| carbamoyl-phosphate synthase, large subunit [Anaeromyxobacter sp.
           K]
          Length = 1077

 Score = 69.8 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 51/278 (18%), Positives = 97/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G++V  +         D               +  L+LA  KPD+   
Sbjct: 29  SGTQACKALKEEGYEVVLLNSNPATIMTDPGFADRTYVEPITPETAELILAREKPDVLLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G    +  V       L    +    + + A   + D++  K+ +   GV +  S  
Sbjct: 89  TLGGQTALNLAVALARNGALARHGVELIGASLEAIEKAEDRLLFKEAMERVGVELPKSGY 148

Query: 113 VNRFTMDS--QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
              +         I  P +I+P       G  V    +       ++ + +    +L E+
Sbjct: 149 ATSWEEARAIARDIGFPIIIRPSFTMGGEGGGVAYNLEEFEPLARRALTLSPTHTILCEE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            + G  E    VM D   +V  I   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SIIGWKEYELEVMRDRKDNVVIICSIEN----FDPMGVHTGDSITVAPAQTLTDKEYQRM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +       + IG   G S   F   P + ++  +E+N 
Sbjct: 265 REAGLRIIREIGVETGGSNIQFGVHPKTGRMVVIEMNP 302



 Score = 58.6 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 32/207 (15%), Positives = 74/207 (35%), Gaps = 30/207 (14%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ--HLISPPYV 129
           L  L +P   +   A   + D+ R   ++   G+    + +           H I  P +
Sbjct: 655 LHALGVPIFGTAPDAIDRAEDRERFAALIEKLGLRQPRNGVARSADEAFAVAHRIGYPAM 714

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV------------DGIEL 177
           ++P        + V+  D+ +   L ++   ++   +LI++++            DG ++
Sbjct: 715 VRPSYVLGGRAMEVVYDDRDLETYLREAVQASNERPVLIDRFLKDAAEVDVDVVSDGRDV 774

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           T G      ++  E A   S            ++  + P  +      E++R +    + 
Sbjct: 775 TVG----GVMEHIEEAGIHSG----------DSACALPPYSLSPAHVAEIERQSVAMARE 820

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINV 264
           +G  G+    F        ++ LE+N 
Sbjct: 821 LGVIGLMNVQFAI--QGDDIYVLEVNP 845


>gi|163852413|ref|YP_001640456.1| carbamoyl-phosphate synthase L chain ATP-binding [Methylobacterium
           extorquens PA1]
 gi|163664018|gb|ABY31385.1| Carbamoyl-phosphate synthase L chain ATP-binding [Methylobacterium
           extorquens PA1]
          Length = 684

 Score = 69.8 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 74/220 (33%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H  +G   E       L    I +      A A   DK+ SK+  ++  V   P  L 
Sbjct: 94  AVHPGYGFLSERESFPKALAEAGIVFIGPNPGAIAAMGDKIESKKAAAAAEVSTVPGFLG 153

Query: 113 ---VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
                   +     I  P +IK   GG   G+ + +    +     ++ S        D+
Sbjct: 154 VIESPEHAVTIADEIGYPVMIKASAGGGGKGMRIAESAGEVAEGFARAKSEASSSFGDDR 213

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+++ D   +   V+GD   +V  +   +        K             +  +  
Sbjct: 214 VFVEKFITDPRHIEIQVIGDKHGNVIYLGERECSIQRRNQK----VIEEAPSPLLDEETR 269

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +++   A    +A+        +F      +  ++LE+N 
Sbjct: 270 RKMGEQAVALAKAVNYDSAGTVEF-VAGQDKSFYFLEMNT 308


>gi|325269766|ref|ZP_08136376.1| phosphoribosylglycinamide formyltransferase 2 [Prevotella
           multiformis DSM 16608]
 gi|324987739|gb|EGC19712.1| phosphoribosylglycinamide formyltransferase 2 [Prevotella
           multiformis DSM 16608]
          Length = 393

 Score = 69.8 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 43/245 (17%), Positives = 83/245 (33%), Gaps = 36/245 (14%)

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD-----KMR 95
           ++  V+    PDL    +     E         LL+       +  SA +++     +  
Sbjct: 55  ALDAVVEFHAPDLIVPEIEAIRTE--------RLLDYEQRGIQVAPSARAVNFTMNRRAI 106

Query: 96  SKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153
                   G+          +     +  +I  P V+KPL   S  G   +  D+ +   
Sbjct: 107 RDLAALDLGLRTAKYFYAKSYDEFKTAADVIGFPCVVKPLMSSSGHGQSYVHNDEELAEA 166

Query: 154 LLQSSSWNHGD--QLLIEQYVDGIE----LTCGVMGDASLDVTEIA-VPKSDFYSYELKY 206
              +     GD  +++IE+++D       LT       +L    I  V K   Y      
Sbjct: 167 YRNAMEGARGDVKEVIIEEFIDFESEFTLLTVTQKNGPTLFCPPIGHVQKGGDY------ 220

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
                    P  +P +  ++ + +A    +A+   GI   +F       +V + E++ +P
Sbjct: 221 ----RESWQPFALPEEALRQAEHIAGEVTRALTGYGIWGVEFFLTKQ-GEVIFSELSPRP 275

Query: 267 ---GM 268
              GM
Sbjct: 276 HDTGM 280


>gi|288561047|ref|YP_003424533.1| carbamoyl-phosphate synthase large subunit CarB [Methanobrevibacter
           ruminantium M1]
 gi|288543757|gb|ADC47641.1| carbamoyl-phosphate synthase large subunit CarB [Methanobrevibacter
           ruminantium M1]
          Length = 1058

 Score = 69.8 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 42/290 (14%), Positives = 94/290 (32%), Gaps = 43/290 (14%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI---------DVD------------RSVGLV 45
           G ++E + S   G     +L + G +   +         D+D              V  +
Sbjct: 21  GQAAEFDYS---GSQACKSLREEGLETVLVNSNPATIQTDMDMADTVYTEPLTAELVAQI 77

Query: 46  LAHLKPDLAFNVLHGNFG-----EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           +     D     + G  G     E G +  +LE   I    S +   A   D+      +
Sbjct: 78  IEKENIDAILPTMGGQTGLNIATELGKL-GLLE--GIKVIGSDVQTIADVEDRDLFANFM 134

Query: 101 SSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS 158
                P+     V      +++   I  P +++P       G  +    + +        
Sbjct: 135 DRLDEPIPKCHAVESVEGALEAVEEIGYPVIVRPAFTLGGTGGGIAHNKEELIEVTTHGL 194

Query: 159 SWNHGDQLLIEQYVDG---IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215
             ++ +Q+LI++ V G   IE       + +  +            +     + +S  V 
Sbjct: 195 DMSYINQVLIDESVLGWKEIEFEVMRDKNDTCIIVCNMENVDPMGIH-----TGDSIVVA 249

Query: 216 PA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           P   +  ++ + ++  +    + +G  G     F  +P + +   +E+N 
Sbjct: 250 PIQNLNDEVCQRLRDASIKIIRNLGINGGCNIQFALNPETNEYKIIEVNP 299



 Score = 55.5 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 27/197 (13%), Positives = 72/197 (36%), Gaps = 8/197 (4%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYV 129
           L    +    +   +     D+ R  +V++   +   P  L N F    ++   I  P +
Sbjct: 638 LAKAGVKILGTPYESIDRVEDRERFTEVLNDLHIHQAPYGLANSFDEAKEAAERIGFPVL 697

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++     +   + ++   +    +L+++++ D +EL   ++ D    
Sbjct: 698 VRPSYVIGGRAMEIVYGVDELEEYMKEAVKVSPEHPILVDKFLEDAVELDVDLLCDGEDV 757

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
                +   +    E    S +S  V+P + IP  + + ++         +   G+    
Sbjct: 758 FIAGIMEHIE----EAGVHSGDSACVIPPQTIPEHLLEVIRENTRKLALELDVIGLMNIQ 813

Query: 248 FLFDPLSRKVFWLEINV 264
           +       +V+ +E N 
Sbjct: 814 YAVKLDEERVYIIEANP 830


>gi|220917308|ref|YP_002492612.1| carbamoyl-phosphate synthase, large subunit [Anaeromyxobacter
           dehalogenans 2CP-1]
 gi|219955162|gb|ACL65546.1| carbamoyl-phosphate synthase, large subunit [Anaeromyxobacter
           dehalogenans 2CP-1]
          Length = 1077

 Score = 69.8 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 51/278 (18%), Positives = 97/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G++V  +         D               +  L+LA  KPD+   
Sbjct: 29  SGTQACKALKEEGYEVVLLNSNPATIMTDPGFADRTYVEPITPETAELILAREKPDVLLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G    +  V       L    +    + + A   + D++  K+ +   GV +  S  
Sbjct: 89  TLGGQTALNLAVALARNGALARHGVELIGASLEAIEKAEDRLLFKEAMERVGVELPKSGY 148

Query: 113 VNRFTMDS--QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
              +         I  P +I+P       G  V    +       ++ + +    +L E+
Sbjct: 149 ATSWEEARAIARDIGFPIIIRPSFTMGGEGGGVAYNLEEFEPLARRALTLSPTHTILCEE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            + G  E    VM D   +V  I   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SIIGWKEYELEVMRDRKDNVVIICSIEN----FDPMGVHTGDSITVAPAQTLTDKEYQRM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +       + IG   G S   F   P + ++  +E+N 
Sbjct: 265 REAGLRIIREIGVETGGSNIQFGVHPKTGRMVVIEMNP 302



 Score = 58.6 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 32/207 (15%), Positives = 75/207 (36%), Gaps = 30/207 (14%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ--HLISPPYV 129
           L  L +P   +   A   + D+ R   ++   G+    + +           H I  P +
Sbjct: 655 LHALGVPIFGTAPDAIDRAEDRERFAALIEKLGLRQPRNGVARSADEAFAVAHRIGYPAM 714

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV------------DGIEL 177
           ++P        + V+  D+ +   L ++   ++   +LI++++            DG ++
Sbjct: 715 VRPSYVLGGRAMEVVYDDRDLETYLREAVQASNERPVLIDRFLKDAAEVDVDVVSDGRDV 774

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           T G      ++  E A   S            ++  + P  +  +   E++R +    + 
Sbjct: 775 TVG----GVMEHIEEAGIHSG----------DSACALPPYSLRPEHVAEIERQSVAMARE 820

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINV 264
           +G  G+    F        ++ LE+N 
Sbjct: 821 LGVIGLMNVQFAI--QGDDIYVLEVNP 845


>gi|157803516|ref|YP_001492065.1| acylglycerophosphoethanolamine acyltransferase [Rickettsia
           canadensis str. McKiel]
 gi|157784779|gb|ABV73280.1| acylglycerophosphoethanolamine acyltransferase [Rickettsia
           canadensis str. McKiel]
          Length = 665

 Score = 69.8 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 81/221 (36%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+     IL+   +              DK+ +K++    GV   P  + 
Sbjct: 81  AVHPGYGFLSENPNFANILKREGVVLIGPSATTIKKMGDKIEAKKIAIEAGVSTVPGYMG 140

Query: 114 N----RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD-----LLQSSSWNHGD 164
                +  +D    I  P ++K   GG   G+ V+     +        L  ++S++  D
Sbjct: 141 TIKDVKQAVDIAKEIGFPIIVKAAAGGGGRGMRVVNNPAEMANAFESAKLEAANSFS-DD 199

Query: 165 QLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           +L IE+ +     +   ++ D   +   +   +     +  K           + I  D+
Sbjct: 200 RLFIEKLIQTPRHIEIQLLADQYGNSVCLGERECSIQRHHQK----VIEEAPSSFITEDV 255

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +E+ +      Q +G       +F+ D  ++  ++LE+N 
Sbjct: 256 RQEMYKQVISLSQKVGYYSAGTVEFIVD-SNKNFYFLEMNT 295


>gi|119480925|ref|XP_001260491.1| carbamoyl-phosphate synthase, large subunit [Neosartorya fischeri
           NRRL 181]
 gi|119408645|gb|EAW18594.1| carbamoyl-phosphate synthase, large subunit [Neosartorya fischeri
           NRRL 181]
          Length = 1175

 Score = 69.8 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 58/291 (19%), Positives = 105/291 (36%), Gaps = 41/291 (14%)

Query: 6   GGIS----SEREVSLSSGKACASALEDAGF--------------------KVSQIDVDRS 41
           GG+S     E + S   G     AL++AG                     +V  + V   
Sbjct: 108 GGLSIGQAGEFDYS---GSQALKALKEAGVKSVLINPNIATIQTDHKLADEVYYLPVTPE 164

Query: 42  -VGLVLAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRS 96
            V  V+   +PD  F    G    +  VQ     I E   +    + I     S D+   
Sbjct: 165 YVTHVIERERPDGIFLSFGGQTALNLGVQMNRMGIFERYGVRVLGTSIKTLETSEDRDLF 224

Query: 97  KQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154
            Q +    +P+  SI VN     + +   +  P +++       LG    +  + +    
Sbjct: 225 AQALKEINIPIAESIAVNTVDEALKAAETVGYPIIVRSAYALGGLGSGFAENPEELK--N 282

Query: 155 LQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTH 213
           L S S     Q+L+E+ + G  E+   V+ DA+ +   I V   + +   L   + +S  
Sbjct: 283 LASRSLTLAPQILVEKSLKGWKEVEYEVVRDAANN--CITVCNMENFD-PLGIHTGDSIV 339

Query: 214 VLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
           V P++ +  + Y  ++  A    + +G  G     +   P       +E+N
Sbjct: 340 VAPSQTLSDEEYHMLRTAAIKIVRHLGVVGECNVQYALQPDGLDYRVIEVN 390



 Score = 53.6 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 26/176 (14%), Positives = 59/176 (33%), Gaps = 12/176 (6%)

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--QHLISPPYVI 130
           E        +       + D+ +  Q++ S GV       +            +  P ++
Sbjct: 738 ETGGAHVLGTDPQDIDKAEDRHKFSQILDSIGVDQPAWKELTSVAEAERFAESVGYPVLV 797

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL----TCGVMGDAS 186
           +P    S   + VI     +   LL +S+ +    ++I ++++G +          G   
Sbjct: 798 RPSYVLSGAAMSVIYSGDELKEKLLNASAVSPDHPVVITKFIEGAQEIDIDAVASNGKLL 857

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
           L      V  +  +S +       +  + PA +   +   V+ +A    +A    G
Sbjct: 858 LHAVSEHVEPAGVHSGDA------TLVLPPASLDEKVMGRVKEIAEKVAKAWNITG 907


>gi|51892342|ref|YP_075033.1| carbamoyl-phosphate synthase large subunit [Symbiobacterium
           thermophilum IAM 14863]
 gi|81826164|sp|Q67Q54|CARB_SYMTH RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|51856031|dbj|BAD40189.1| carbamoyl-phosphate synthase large subunit [Symbiobacterium
           thermophilum IAM 14863]
          Length = 1084

 Score = 69.8 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 45/327 (13%), Positives = 109/327 (33%), Gaps = 54/327 (16%)

Query: 2   AVLMG------GISSEREVSLSSGKACASA--LEDAGFKVSQI---------DVDRSVGL 44
           AV++G      G   E + S     A  +A  L+  G +   I         D D S  L
Sbjct: 554 AVVLGSGPIRIGQGIEFDYS-----AVHAAWELKAEGIQSIVINNNPETVSTDFDTSDRL 608

Query: 45  VLAHLKPDLAFNVLHGNFGEDGLVQAI---------------LELLEIPYTHSGILASAL 89
               L  +   NV+     ++G ++ +               L    +    + I     
Sbjct: 609 YFEPLTLEDVLNVVE----QEGDIEGVICQFGGQTAINLAVPLSRAGVRVLGTDIDQMDR 664

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147
           + D+ R  Q++S   +P  P          +     I  P +++P        + ++  +
Sbjct: 665 AEDRRRFDQLLSDLSIPRPPGGTATSVEEAVAVARRIGYPVLVRPSFVLGGRAMEIVHDE 724

Query: 148 QSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYS 207
             +   + ++ + +    +L+++Y  G E+    + D    +    +   +         
Sbjct: 725 AELRAYMREAIAVSSDRPVLVDRYFLGKEVEVDCVSDGEQVIIAGIMEHLERAGVHS--- 781

Query: 208 SLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
             +S  V P   +     + +   +     A+  +G+    ++      +++ +E+N + 
Sbjct: 782 -GDSIAVYPTVTLTHRQRETIVAYSTRLALALQVKGLVNIQYVIH--GGEIYVIEVNPRS 838

Query: 267 GMTPVSIFPEMAAYAGYSFRELLLWMV 293
             T     P +    G    ++   ++
Sbjct: 839 SRT----VPFLTKVTGLELAKVATQVI 861



 Score = 69.8 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 50/287 (17%), Positives = 106/287 (36%), Gaps = 35/287 (12%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQID-------VDRSVGL--------------V 45
           G ++E + +   G     AL + G +V  I+        DR V                V
Sbjct: 21  GQAAEFDYA---GTQACQALREEGLRVVLINSNPATIMTDRHVADRVYIEPITPEFVERV 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +A  +P      L G  G +  +Q     +L    +    + + A   + D+   + ++ 
Sbjct: 78  IARERPQGLLPTLGGQVGLNMAMQLEEAGVLARYGVRLLGTPLTAIRRAEDRAEFRALMK 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G PV  S +V      +     +  P +++P       G  +    + +   + +   
Sbjct: 138 EIGEPVPESAIVTTPEEALAFGEEVGYPLIVRPAYTLGGTGGGIAHDREEMRDIVTRGLK 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   Q L+E+ + G  E+   VM D + +   I   ++      +   + +S  V P++
Sbjct: 198 LSPVTQCLVERSLLGWKEIEYEVMRDGAGNAITICSMEN---IDPVGVHTGDSIVVAPSQ 254

Query: 219 -IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +    ++ ++  A     A+G  G     F  +P +R+   +E+N 
Sbjct: 255 TLTDREHQILRSAALKIIDALGIEGGCNVQFALNPHAREYMVIEVNP 301


>gi|154245799|ref|YP_001416757.1| carbamoyl-phosphate synthase L chain ATP-binding [Xanthobacter
           autotrophicus Py2]
 gi|154159884|gb|ABS67100.1| Carbamoyl-phosphate synthase L chain ATP-binding [Xanthobacter
           autotrophicus Py2]
          Length = 666

 Score = 69.8 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 41/221 (18%), Positives = 76/221 (34%), Gaps = 20/221 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       E   I +      A      K  +K ++   GVP+ P    
Sbjct: 80  AIHPGYGFLSENAAFAEACEKAGIVFVGPPASAIRAMGSKSAAKALMEKAGVPLVPGYHG 139

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
                         I  P +IK   GG   G+ V++     P  L     ++ S    D+
Sbjct: 140 EDQDAGLLAREAERIGFPVLIKASAGGGGKGMKVVRSAAEFPDALASAQREAKSAFGDDR 199

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           +L+E+Y+     +   V  D+  +   +            K          PA  +  + 
Sbjct: 200 VLVEKYLTTPRHIEVQVFADSHGNAVYLHERDCSIQRRHQK-----VVEEAPAPGMTPER 254

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              + + A  A +A+G  G    +F+    S   +++E+N 
Sbjct: 255 RAAMGKAAVDAAKAVGYVGAGTVEFI--AESENFYFMEMNT 293


>gi|299531044|ref|ZP_07044457.1| carbamoyl-phosphate synthase L chain [Comamonas testosteroni S44]
 gi|298721001|gb|EFI61945.1| carbamoyl-phosphate synthase L chain [Comamonas testosteroni S44]
          Length = 682

 Score = 69.8 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 76/220 (34%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+       E   I +      + A   DK+ SK++     V   P    
Sbjct: 77  AVHPGYGFLSENEGFAKRCEEEGIAFIGPKSHSIAAMGDKIASKKLAGEAQVNTIPGYND 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
            I      ++    I  P +IK   GG   G+ V   D+           ++ +    D+
Sbjct: 137 AIAGPEQAVEIAKGIGYPVMIKASAGGGGKGLRVAFNDKEAFEGFASCQNEARNSFGDDR 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE++V +   +   ++GD+  +V  +   +        K             I  +  
Sbjct: 197 IFIEKFVQEPRHIEIQILGDSHGNVVYLNERECSIQRRHQK----VIEEAPSPFISDETR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K +   A    +A+  +     +F      +  ++LE+N 
Sbjct: 253 KAMGEQAVALAKAVKYQSAGTVEF-VVGKDQDFYFLEMNT 291


>gi|255327149|ref|ZP_05368224.1| carbamoyl-phosphate synthase, large subunit [Rothia mucilaginosa
           ATCC 25296]
 gi|255295767|gb|EET75109.1| carbamoyl-phosphate synthase, large subunit [Rothia mucilaginosa
           ATCC 25296]
          Length = 1106

 Score = 69.8 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 48/288 (16%), Positives = 109/288 (37%), Gaps = 36/288 (12%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI---------DVD------------RSVGLV 45
           G ++E + S   G      L++ G +V  +         D +              +  +
Sbjct: 21  GQAAEFDYS---GTQALRVLKEEGVRVILVNSNPATIMTDPEFADATYIEPITPEVIEKI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   KPD     L G    +  +    + +L    +    + I A  L  D+   K VV 
Sbjct: 78  IEKEKPDAILPTLGGQTALNAAISLDERGVLSKYNVELIGANIEAINLGEDREAFKGVVE 137

Query: 102 SCGVPVCPSILVNR--FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G     S++V+     +++   +  P V++P      LG  +   ++ +         
Sbjct: 138 RAGGESARSVIVHSMPEALEAAKELGYPMVVRPSFTMGGLGSGMAYNEEDLYRIAGAGIQ 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA- 217
           ++   ++L+E+ + G  E    +M D + +V  +   ++      +   + +S  V PA 
Sbjct: 198 YSPTSEVLLEESILGWKEYELEMMRDTNDNVVVVCSIENFD---PVGVHTGDSITVAPAL 254

Query: 218 KIPLDIYKEVQRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
            +    +++++ +A    + +G   G     F  DP + ++  +E+N 
Sbjct: 255 TLTDREFQKLRDIAINVIREVGVDTGGCNIQFAIDPKTGRIIVIEMNP 302



 Score = 55.5 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 40/233 (17%), Positives = 85/233 (36%), Gaps = 25/233 (10%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--QHLISPPYV 129
           L+   +P   +   A  L+ D+    +V+   G+    +     F         I  P +
Sbjct: 655 LKDAGVPILGTTPEAIDLAEDRGEFSRVLEEGGLISPKNGTAFTFEGAKRIADEIGYPVL 714

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDAS-- 186
           ++P       G+ ++  + ++   L  ++  +     LI++++ D IE+    + D    
Sbjct: 715 VRPSYVLGGRGMEIVYDEANLARYLENATEVSPSQPALIDKFLEDAIEIDVDALFDGEEL 774

Query: 187 -LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
            L      + ++  +S        +S  + P  +  DI  +V+       +  G RG+  
Sbjct: 775 YLGGVMEHIEEAGIHS------GDSSCTLPPITLGPDIIAKVKDATEKIARGTGVRGLIN 828

Query: 246 SDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEMAAYA-----GYSFREL 288
             F +   +  ++ +E N       P     +   +MA  A     G S  EL
Sbjct: 829 IQFAYVSEN--LYVIEANPRASRTVP-FVSKATGVQMAKAAVLIGLGKSIAEL 878


>gi|258512096|ref|YP_003185530.1| phosphoribosylaminoimidazole carboxylase, ATPase subunit
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
 gi|257478822|gb|ACV59141.1| phosphoribosylaminoimidazole carboxylase, ATPase subunit
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
          Length = 395

 Score = 69.8 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 37/209 (17%), Positives = 81/209 (38%), Gaps = 22/209 (10%)

Query: 70  AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--FTMDSQHLISPP 127
           A+ E  ++P    G    A+   ++R K  ++  G+PV P   ++      ++       
Sbjct: 94  ALAETCDVPQ---GSELLAICQHRVREKSTLAQHGLPVTPFAPISSMGDLDEALERFGER 150

Query: 128 YVIKPLKGG-SSLGIIVIKKDQSIPL-DLLQSSSWNH-------GDQLLIEQYVD-GIEL 177
            V+K  +GG    G  +++  + +       + + +H          L+ E YV    EL
Sbjct: 151 MVVKTCRGGYDGKGQWMVRSREDVEKHAQDWARAMDHHRAAGFDDQPLIAEAYVPFEGEL 210

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           +  V  +   +V      ++    + L  S      ++PA+ P D+    + +A    +A
Sbjct: 211 SVIVARNRRGEVRAFPPAENIHKRHILHMS------IVPARYPEDVIARAEDIARRVAEA 264

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQP 266
           +G  G+   +        ++   E+  +P
Sbjct: 265 LGVIGLIAVEMFVT-QGGELLINELAPRP 292


>gi|217967427|ref|YP_002352933.1| acetyl-CoA carboxylase, biotin carboxylase [Dictyoglomus turgidum
           DSM 6724]
 gi|217336526|gb|ACK42319.1| acetyl-CoA carboxylase, biotin carboxylase [Dictyoglomus turgidum
           DSM 6724]
          Length = 447

 Score = 69.8 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 80/220 (36%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E      I +   I +            DK R+K+++   GVP+ P    
Sbjct: 77  AIHPGYGFLAESARFAEICQDHGIVFIGPKKEVIENLGDKARAKKLMKEAGVPLLPGSEG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGDQ 165
            I   +  +     I  P +IK   GG   G+ V    + +     L  +++        
Sbjct: 137 LIEDEKQALKVAKEIGFPVLIKATAGGGGKGMRVSYSPEELVKNIRLAKMEAEKNFGNPG 196

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE++++    +   ++GD   ++  +          + +Y  L         +   I 
Sbjct: 197 VYIEKFIEEPRHVEIQILGDQYGNIISLGERDCTI---QRRYQKL-IEESPSPVVNNRIR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + + R A      +G  G    +FL D    K +++E+N 
Sbjct: 253 EAMSRAAIRGAYKVGYVGPGTFEFLLDK-DGKFYFMEVNT 291


>gi|116070931|ref|ZP_01468200.1| Carbamoyl-phosphate synthase, large subunit, glutamine-dependent
           [Synechococcus sp. BL107]
 gi|116066336|gb|EAU72093.1| Carbamoyl-phosphate synthase, large subunit, glutamine-dependent
           [Synechococcus sp. BL107]
          Length = 1106

 Score = 69.8 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 58/283 (20%), Positives = 96/283 (33%), Gaps = 44/283 (15%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL   GF+V  +         D                V  V+   +PD    
Sbjct: 29  SGTQACKALRAEGFEVVLVNSNPASIMTDPGMADRTYIEPLTPEVVAKVIEKERPDALLP 88

Query: 57  VLHG--------NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
            + G           E+G     L+   +    + + A   + D++  KQ +   GV VC
Sbjct: 89  TMGGQTALNLAVTLAENGT----LDRFGVELIGADLQAIQKAEDRLLFKQAMERIGVSVC 144

Query: 109 PSILVNRFTMDS---QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
           PS + +           + S P +I+P       G  +    +            +   Q
Sbjct: 145 PSGIASTQEEAETVGAEIGSFPRIIRPAFTLGGSGGGIAYNPEEFAAICKSGLEASPVSQ 204

Query: 166 LLIEQYVDG-IELTCGVMGD-ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
           +LIEQ + G  E    VM D A   V   ++   D           +S  V PA+ +   
Sbjct: 205 ILIEQSLLGWKEFELEVMRDLADNVVIVCSIENLDPMGVHT----GDSITVAPAQTLTDR 260

Query: 223 IYKEVQRLAFLAHQAIG-CRGISRSDFLFDPLSRKVFWLEINV 264
            Y+ ++  +    + IG   G S   F  +P +  V  +E+N 
Sbjct: 261 EYQRLRDQSIAIIREIGVATGGSNIQFAINPANGDVVVIEMNP 303



 Score = 48.6 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/219 (13%), Positives = 75/219 (34%), Gaps = 14/219 (6%)

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ--HLISPPYVIKPLKGGSS 138
            +   +   + D+ + + ++    +    + L            ++  P V++P      
Sbjct: 688 GTSPESIDRAEDREQFEAILRDLSIRQPRNGLARSEEEARAIATVVGYPVVVRPSYVLGG 747

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKS 197
             + V+  +Q +   + ++        +LI+QY++  +E+    + D   +V    + + 
Sbjct: 748 RAMEVVFDEQELNRYMREAVQVEPDHPVLIDQYLENAVEVDVDALSDQDGNVVIGGLME- 806

Query: 198 DFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256
             +       S +S   LP   +       ++  +     ++  +G+    F     S  
Sbjct: 807 --HIEPAGIHSGDSACCLPTVSLGESALHTIREWSKALAISLKVKGLINLQFAVQRDSNG 864

Query: 257 ---VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
              VF +E N +   T     P +A   G     L   +
Sbjct: 865 QEVVFIIEANPRASRT----VPFVAKATGKPLARLATRL 899


>gi|317970260|ref|ZP_07971650.1| carbamoyl phosphate synthase large subunit [Synechococcus sp.
           CB0205]
          Length = 1097

 Score = 69.8 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 57/279 (20%), Positives = 96/279 (34%), Gaps = 36/279 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLA------------FN 56
           SG     AL   GF+V  +         D D +    +  L PD+               
Sbjct: 29  SGTQACKALRAEGFEVVLVNSNPASIMTDPDMADRTYIEPLTPDVVRRVIELERPDALLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G    +  V       LE   +    + + A   + D+   K+ +   GV VCPS  
Sbjct: 89  TMGGQTALNLAVALSKDGTLEKYGVELIGANLEAIEKAEDRDLFKRAMGRIGVGVCPSGI 148

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
              +         + S P +I+P       G  +    +      L     +  +Q+LIE
Sbjct: 149 ATTLEEAEAVGDQIGSYPRIIRPAFTLGGSGGGIAYNPEEFRAICLSGLDASPVNQILIE 208

Query: 170 QYVDG-IELTCGVMGDASL-DVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKE 226
           Q + G  E    VM D +   V   ++   D           +S  V PA+ +    Y+ 
Sbjct: 209 QSLLGWKEFELEVMRDTADNVVIVCSIENLDPMGVHT----GDSITVAPAQTLTDREYQR 264

Query: 227 VQRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
           ++  +    + IG   G S   F  +P +  V  +E+N 
Sbjct: 265 LRDQSIAIIREIGVDTGGSNIQFAINPANGDVIVIEMNP 303



 Score = 47.8 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 42/299 (14%), Positives = 99/299 (33%), Gaps = 39/299 (13%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ------ 69
           AL++ GF    +         D D S  L    L  +   NV+     E  +VQ      
Sbjct: 603 ALQEEGFATVMVNSNPETVSTDYDTSDRLYFEPLTFEDVLNVIEAEKPEGVIVQFGGQTP 662

Query: 70  -----AILELLEIPYT--------HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116
                 +L  L+ P           +   +   + D+ + + ++    +    + L    
Sbjct: 663 LKLAIPLLNWLQSPAGQATGTRIWGTSPESIDTAEDREQFEAILRRLDIRQPRNGLARSE 722

Query: 117 TMDS--QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD- 173
                    +  P V++P        + V+  +  +   + ++ +      +LI+QY++ 
Sbjct: 723 AEARVVAERVGYPVVVRPSYVLGGRAMEVVYGEDELNRYMNEAVNVEPDHPVLIDQYLEN 782

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
             E+    + DA+  V    +   +       +S  ++  +    +  +    +++ +  
Sbjct: 783 ATEVDVDALCDATGKVVIGGL--MEHIEPAGVHSGDSACALPSVSLEQEALATIRQWSEA 840

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
              A+   G+    F        V+ +E N +   T     P +A   G    ++   +
Sbjct: 841 LALALQVNGLINLQFAI--KDGLVYIIEANPRASRT----VPFVAKATGAPLAKIASRI 893


>gi|320107212|ref|YP_004182802.1| carbamoyl-phosphate synthase large subunit [Terriglobus saanensis
           SP1PR4]
 gi|319925733|gb|ADV82808.1| carbamoyl-phosphate synthase, large subunit [Terriglobus saanensis
           SP1PR4]
          Length = 1094

 Score = 69.8 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 59/299 (19%), Positives = 110/299 (36%), Gaps = 48/299 (16%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI----------------------------DV 38
           G S+E + S   G     AL+  G++V  +                            ++
Sbjct: 21  GQSAEFDYS---GTQACKALKAEGYEVVLVNSNPASIMTDPEVADRTYIEPLTPRYVEEI 77

Query: 39  DRSVGLVLAHLKPDLAFNVLHGNFGE-------DGLVQAILELLEIPYTHSGILASALSM 91
            R    +L        F VL    G+       D     ILE   +    + + A   + 
Sbjct: 78  LRVESEMLVESGKPGVFAVLPTVGGQTALNLAVDLADTGILEKYNVELIGAKLDAIKKAE 137

Query: 92  DKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS 149
           D++  K  ++  G+ +  S+LVN  R  +D    I  P VI+P       G  +    + 
Sbjct: 138 DRLLFKDAMNKIGLDMPRSVLVNNLRDGLDFTQKIGFPAVIRPSFTLGGSGGGIAYNREE 197

Query: 150 IPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS 208
           +   L +    +   + L+E+ V G  E    V+ D + +V  I   ++    ++     
Sbjct: 198 LTEILARGLDLSPVGECLLEESVLGWKEYELEVVRDLADNVIIICSIEN----FDPMGVH 253

Query: 209 -LNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
             +S  V PA+ +    Y+ ++  A    + IG   G S   F  +P + ++  +E+N 
Sbjct: 254 TGDSITVAPAQTLTDREYQCMRDAAIRVIREIGVETGGSNVQFAVNPANGRMTVIEMNP 312



 Score = 63.6 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 45/295 (15%), Positives = 107/295 (36%), Gaps = 37/295 (12%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH---GNFGEDGLVQAI- 71
           AL + G++   +         D D S  L    L  +    V H    +  E G++    
Sbjct: 594 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLAVYHHEASSGAEIGMIVQFG 653

Query: 72  ----------LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMD 119
                     L+   +P   +   +  L+ D+ R  +++   G+P     +       + 
Sbjct: 654 GQTPLNLSLPLKAAGVPIIGTSPESIDLAEDRKRFGKLIEELGIPQPQGAMATSIEEAIA 713

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELT 178
               ++ P +++P        ++++  +  +   +  +  ++    +LI+ ++ D  E+ 
Sbjct: 714 GADRVTYPVLVRPSYVLGGRAMVIVYDEAGVRNYMSTAIEYSQERPVLIDHFLEDATEVD 773

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQA 237
              + D +  V    +   +    E    S +S+ VLPA  +  ++  +++        A
Sbjct: 774 VDALCDGTDVVIAGIMQHIE----EAGIHSGDSSCVLPAVDLSKEVLDQIRVYTRKLAMA 829

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +   G+    F       KVF +E+N +   T     P ++   G    ++   +
Sbjct: 830 LSVIGLVNIQFAIQR--GKVFVIEVNPRASRT----VPYVSKATGVPLAKIASRL 878


>gi|167580309|ref|ZP_02373183.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia
           thailandensis TXDOH]
          Length = 404

 Score = 69.8 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 50/277 (18%), Positives = 93/277 (33%), Gaps = 38/277 (13%)

Query: 19  GKACASALEDAGFKVSQID----------------VDRSVGLVLAHL----KPDLAFNVL 58
           GK    AL+  G +V  +D                +D +    L  L    +P L    +
Sbjct: 27  GKEVIIALQRLGVEVIAVDRYPNAPGHQVAHRAHVIDMTDPDALRALVDAERPHLVVPEI 86

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKM-RSKQVVSSCGVPVCPSILVNRFT 117
                 D L  A +E   +        A+ L+M++    +      G+P  P      F 
Sbjct: 87  EAI-ATDAL--AEIEAAGVAEVIPTARATQLTMNREGIRRLAAEELGLPTSPYAFAQSFD 143

Query: 118 M--DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH--GDQLLIEQYV- 172
               +   I  P V+KP+   S  G  V++ D  +      + +       ++++E +V 
Sbjct: 144 AFRAAVAQIGFPCVVKPVMSSSGKGQSVVRSDADVEPAWQYAMAGGRVNHGRVIVEGFVQ 203

Query: 173 ---DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
              +  +LT   +  ASL+                 Y         P  +     +  + 
Sbjct: 204 FDYEITQLTVRAIDPASLETRTYFCEPIGHVQVAGDY----VESWQPQPMSAKALERSRD 259

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
           +A     A+G RGI   +         V++ E++ +P
Sbjct: 260 IAHRVTSALGGRGIFGVELFVR--GDDVWFSEVSPRP 294


>gi|134046228|ref|YP_001097713.1| RimK domain-containing protein [Methanococcus maripaludis C5]
 gi|132663853|gb|ABO35499.1| RimK domain protein ATP-grasp [Methanococcus maripaludis C5]
          Length = 255

 Score = 69.8 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 33/220 (15%), Positives = 83/220 (37%), Gaps = 26/220 (11%)

Query: 88  ALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIKPLKGGSSLGI 141
            +  DK+     +    V +  +  + +   + ++L      I  P ++K      S+ +
Sbjct: 26  RICADKINMYLHMMENDVSIPKTRFLRKSENNLENLKCIVEEIGLPLIVKEPSTSFSMRV 85

Query: 142 IVIKKDQSIPLDLLQSSSWNHGDQLLI-EQYVDGI-ELTCGVMGDASLDVTEIAVPKSDF 199
             +   +         S +     +L+ +++++   +   G++    + V +  +PK  F
Sbjct: 86  EKVNSIEEFS---KIVSRFLRLSDILVAQEFIETRFDWRVGILNGEVIYVCKYLIPKESF 142

Query: 200 YSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
              +      +  + +   I   ++ KEV   A  A  A+G       D        KV+
Sbjct: 143 KIQDC--VDGHRVYCMVESIMYDEVPKEVINTALKAANAVGTGLYG-ID--LKEKDGKVY 197

Query: 259 WLEINVQPGM--TPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            +E+N  P +  T    +PE        + +++  +++D+
Sbjct: 198 VIEVNDNPSLETTEDEFYPEA-------YSKIVSHIMDDS 230


>gi|85708386|ref|ZP_01039452.1| propionyl-CoA carboxylase, alpha subunit [Erythrobacter sp. NAP1]
 gi|85689920|gb|EAQ29923.1| propionyl-CoA carboxylase, alpha subunit [Erythrobacter sp. NAP1]
          Length = 678

 Score = 69.8 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 36/223 (16%), Positives = 72/223 (32%), Gaps = 19/223 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E       LE   I +    + A A   DK+ SK++    GV   P    
Sbjct: 77  AVHPGYGFLSERASFVEALEAENIAFIGPPVGAIAAMGDKIESKRLAKEAGVNTVPGSED 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
            I      +     I  P +IK   GG   G+ +   D+ +      +          D+
Sbjct: 137 AIQSTEEALKVSQDIGYPVMIKASAGGGGKGMRLAWNDKDVEEGFPATQREGLNSFGDDR 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE++++    +   ++GD    +  +   +        K             +   + 
Sbjct: 197 VFIEKFIENPRHIEIQILGDKHGTILYLNERECSIQRRHQK----VVEEAPSPFVTEKMR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLF---DPLSRKVFWLEINV 264
           K +        +A+        + +    D      ++LE+N 
Sbjct: 253 KAMGEQCVALARAVDYHSAGTVELIVSGADKTGESFYFLEMNT 295


>gi|66819073|ref|XP_643196.1| hypothetical protein DDB_G0276335 [Dictyostelium discoideum AX4]
 gi|166208504|sp|P20054|PYR1_DICDI RecName: Full=Protein PYR1-3; Includes: RecName:
            Full=Glutamine-dependent carbamoyl-phosphate synthase;
            Includes: RecName: Full=Aspartate carbamoyltransferase;
            Includes: RecName: Full=Dihydroorotase
 gi|60471286|gb|EAL69248.1| hypothetical protein DDB_G0276335 [Dictyostelium discoideum AX4]
          Length = 2225

 Score = 69.8 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 32/225 (14%), Positives = 84/225 (37%), Gaps = 20/225 (8%)

Query: 76   EIPYTHSGILASALSMDKMRSKQVVSSCGV--PVCPSILVNRFTMDSQHLISPPYVIKPL 133
             +    +       + ++ +  +++ + G+  P+   +     T D    +  P +++P 
Sbjct: 1048 NVKVLGTHPDMIDSAENRYKFSRLLDTIGIDQPLWKELTSVSDTKDFCESVGFPCLVRPS 1107

Query: 134  KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL----TCGVMGDASLDV 189
               S   + V+   Q +   L ++++ +    ++I +++   +          G   L  
Sbjct: 1108 YVLSGAAMNVVHSSQDLETFLTEAAAVSRDHPVVISKFIQEAKEIEIDAVADNGRIVLFA 1167

Query: 190  TEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                V  +  +S        ++T V PA  +      +V+  A    +A+   G     F
Sbjct: 1168 ISEHVENAGVHS-------GDATIVCPAQDLDDATILKVEETARKIAEALNVSGPFNIQF 1220

Query: 249  LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            +    + ++  +E N++      S FP ++     +F EL   ++
Sbjct: 1221 I--AKNNEIKVIECNLRC---SRS-FPFVSKTLNINFIELATKII 1259



 Score = 55.1 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 52/291 (17%), Positives = 103/291 (35%), Gaps = 41/291 (14%)

Query: 6   GGIS----SEREVSLSSGKACASALEDAGFKVSQIDVD---------------------R 40
           GG+S     E + S   G     AL++ G K   I+ +                      
Sbjct: 413 GGLSIGQAGEFDYS---GSQAIKALKEEGIKTILINPNIATVQTSPGLADKVYFLPVNAS 469

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRS 96
           SV  V+ +  PD       G    +  ++     ILE        + I     + D+   
Sbjct: 470 SVQKVIENENPDGILVTFGGQTALNCGIELYKSGILEKYNCKVLGTPIETIIATEDRGIF 529

Query: 97  KQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154
            + +S     + PS+  N    ++     I  P +++       LG       + +    
Sbjct: 530 AEKLSEINERIAPSMACNSLEESLIEAEKIGYPVIVRAAYCLGGLGSGFADNKEQLTA-- 587

Query: 155 LQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTH 213
           L + +     Q+L+E+ + G  E+   V+ D+  +   I V   + +   L   +  S  
Sbjct: 588 LVTEAMATSSQVLVEKSLKGWKEIEYEVLRDSKDN--CITVCNMENFD-PLGIHTGESIV 644

Query: 214 VLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
           V P++ +    Y+ ++  A    + +G  G     +  +P S +   +E+N
Sbjct: 645 VAPSQTLSDREYQMLRETAIKTVRHLGVIGECNIQYSLNPYSEEYCIIEVN 695


>gi|284988774|ref|YP_003407328.1| carbamoyl-phosphate synthase L chain ATP- binding protein
           [Geodermatophilus obscurus DSM 43160]
 gi|284062019|gb|ADB72957.1| Carbamoyl-phosphate synthase L chain ATP- binding protein
           [Geodermatophilus obscurus DSM 43160]
          Length = 501

 Score = 69.8 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 39/283 (13%), Positives = 89/283 (31%), Gaps = 44/283 (15%)

Query: 19  GKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFN---------------------- 56
               A A  + G +V  +         +  L  +                          
Sbjct: 10  AVRVARACRELGIEVVAVYSTSDRNSAVVDLADEAVHIGPPAPRRSYLHVANIVEAALRT 69

Query: 57  ---VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
               +H  +G   ED     I     + +            +K  ++++++  G+P+ P 
Sbjct: 70  GADAVHPGYGFLSEDPDFAEICAAEGLTFVGPPPAVMQQMGNKATARRLMADAGLPLLPG 129

Query: 111 ILVNRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNH 162
           ++    ++D        I  P +IK   GG   G+ V+++   +          + +   
Sbjct: 130 VVEPVGSVDEAREVAARIGYPLIIKAAAGGGGRGMTVVREAADLADAFTTTRATARAVFR 189

Query: 163 GDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIP 220
              + +E+++     +   ++ D   +   +            K          PA  + 
Sbjct: 190 DPAVYLERHLARARHVEVQILCDTHGNGVSLGERDCSLQRRHQKLLEEG-----PAGHLS 244

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            +   E+ RLA     ++G  G    +FL D      +++E+N
Sbjct: 245 PEQRAELGRLAVHGALSVGYTGAGTMEFLVDGS-GSAYFMEMN 286


>gi|289808020|ref|ZP_06538649.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
          serovar Typhi str. AG3]
          Length = 54

 Score = 69.8 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 27/50 (54%)

Query: 1  MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK 50
          +AVL+GG S+ER+VSL+SG A  + L + G     +D        L  + 
Sbjct: 5  IAVLLGGTSAERDVSLNSGAAVLAGLREGGIDAHPVDPQEVDVAQLKAMG 54


>gi|153813434|ref|ZP_01966102.1| hypothetical protein RUMOBE_03854 [Ruminococcus obeum ATCC 29174]
 gi|149830455|gb|EDM85547.1| hypothetical protein RUMOBE_03854 [Ruminococcus obeum ATCC 29174]
          Length = 448

 Score = 69.8 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 41/221 (18%), Positives = 73/221 (33%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  FG   E+     + E   I +        A   +K  +K  +++ GVP+ P    
Sbjct: 77  AIHPGFGFLSENSRFAELCEQCNITFIGPPSTVIASLGNKQAAKNTMANAGVPIIPGGKN 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS-----SSWNHGD 164
            I      M     I  P +IK   GG   G+ V             +      ++    
Sbjct: 137 PIYTVEEGMKEAETIGYPVIIKAALGGGGKGMRVADTPADFEESFRTAQKETQMAFG-DS 195

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            + +E +V     +   +M D   +V  +            K    +   V    I  ++
Sbjct: 196 TMYVEHFVRHPRHIEFQIMADKFGNVIHLGERDCSIQRNHQKMIEESPCEV----ISDEL 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              +   A  A +A G       +FL D   R  +++E+N 
Sbjct: 252 RARMGEAAVKAAKAAGYENAGTIEFLLDKEGR-FYFMEMNT 291


>gi|224371825|ref|YP_002605989.1| CarB2 [Desulfobacterium autotrophicum HRM2]
 gi|223694542|gb|ACN17825.1| CarB2 [Desulfobacterium autotrophicum HRM2]
          Length = 1074

 Score = 69.8 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 49/278 (17%), Positives = 102/278 (36%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G++V  +         D +             ++  ++   +PD    
Sbjct: 29  SGTQACKALKEEGYEVILVNSNPATIMTDPETADRTYIEPVTPETLAKIIEKERPDALLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-I 111
            L G  G +  V+     +LE   +    + + A   + D+   +  ++  G+ +  S  
Sbjct: 89  TLGGQTGLNTAVEAANMGVLERYNVEMIGASLEAINKAEDRELFRDAMNKIGLRIPESGF 148

Query: 112 LVNRFTMDS-QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
             N   +++    I  P +++P       G  V    + +          +   Q+++E+
Sbjct: 149 AHNMAEVETISARIGFPIIVRPSFTLGGTGGGVAYNPEELADLAKSGLDASMITQVMLEE 208

Query: 171 YVDG-IELTCGVMGDASL-DVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            V G  E    VM D +   V   ++   D           +S  V PA+ +    Y+ +
Sbjct: 209 SVLGWKEYELEVMRDHAGNVVIVCSIENIDAMGVHT----GDSLTVAPAQTLSDKEYQVL 264

Query: 228 QRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
           +  +    Q IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RDASIAIMQEIGVDTGGSNVQFAINPENGEMIIVEMNP 302



 Score = 64.0 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 80/221 (36%), Gaps = 14/221 (6%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-SILVN-RFTMDSQHLISPPYV 129
           LE   +P   +   +   + D+ R ++++   G+      I VN          I  P +
Sbjct: 653 LERAGVPIIGTSPDSIDRAEDRDRFQEMLDKLGIAQPANGIAVNIEEAYAVAEKIGYPVM 712

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++    ++      +   +    +LI+Q++ D  EL    + D    
Sbjct: 713 VRPSFVLGGRAMKIVYDRSALEEYFNLAVLASPDHPVLIDQFLEDAFELDVDAISDGENT 772

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           V    +   +    E    S +S  VLP   I      E+   A    + +  +G+    
Sbjct: 773 VIGGMMEHIE----EAGIHSGDSACVLPPYSISKVHIDEMTEAAKALAKELKVKGLMNIQ 828

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           F    +  KV+ +E+N +   T     P ++   G    +L
Sbjct: 829 FGI--MDDKVYVIEVNPRASRT----IPFVSKATGVPLAKL 863


>gi|254456005|ref|ZP_05069434.1| carbamoyl-phosphate synthase, large subunit [Candidatus
           Pelagibacter sp. HTCC7211]
 gi|207083007|gb|EDZ60433.1| carbamoyl-phosphate synthase, large subunit [Candidatus
           Pelagibacter sp. HTCC7211]
          Length = 1074

 Score = 69.8 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 55/278 (19%), Positives = 105/278 (37%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL D G+KV  I         D D              +  +L   KPD    
Sbjct: 29  SGTQACKALRDEGYKVVLINSNPATIMTDPDVADKTYIEPITLEVLEKILKKEKPDAILP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  ++     IL+  +I    +   A + + D+ + ++ +   G+ +  S +
Sbjct: 89  TMGGQTALNLAMEAEKKGILKKYKIELIGANSKAISNAEDRKKFRKNMIDIGLDLPKSEI 148

Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           VN     S+  + I  P +I+P      LG  + K  +     +      +   Q+L+E+
Sbjct: 149 VNNINQASKVLNKIGLPAIIRPAFTLGGLGGGIAKNKKDYLKIIKNGLHESPVSQVLVEE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPA-KIPLDIYKEV 227
            ++G  E    V+ D   +   I   ++ D           +S  V PA  +    Y+ +
Sbjct: 209 CLEGWKEFEMEVIRDKKDNCIIICSIENIDPMGIHT----GDSVTVAPALTLTDKEYQVM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RNASIACLRKIGVETGGSNVQFAINPKNGRMVIIEMNP 302



 Score = 62.8 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 41/267 (15%), Positives = 97/267 (36%), Gaps = 35/267 (13%)

Query: 26  LEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLE 76
           L+DAGF+   +         D D S  L    LK +  FN++     E G +  ++    
Sbjct: 588 LKDAGFETIMVNCNPETVSTDYDTSDRLYFEPLKEEYVFNII-KKEKEKGNLIGVIAQFG 646

Query: 77  ---------------IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ 121
                          +P   +   +  L+ D+ R + +++   +    S +   F    Q
Sbjct: 647 GQTPIKLAKFLNDNKLPILGTQYTSIDLAEDRDRFRDLLNKLKLKQAESGIAKTFKQAIQ 706

Query: 122 --HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELT 178
               I  P +++P        + ++ +   +   + ++      + +LI++++D  +E+ 
Sbjct: 707 IAEKIGLPLMVRPSYVLGGRAMEIVHEKSQLKNFVEEAFKAAEENPILIDKFIDHAMEVD 766

Query: 179 C-GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
              +     + V  I     +   +    S  ++  + P  I   + KE++        A
Sbjct: 767 VDAISDGKQVHVAGIMQHIEEAGIH----SGDSACSLPPVSIKPYLIKEIENQTKKLALA 822

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINV 264
           +  +G     F       +++ +E+N 
Sbjct: 823 LKVKGFMNIQFAIKK--DEIYVIEVNP 847


>gi|207742103|ref|YP_002258495.1| acetyl/propionyl-coa carboxylase, alpha subunit protein [Ralstonia
           solanacearum IPO1609]
 gi|206593490|emb|CAQ60417.1| probable acetyl/propionyl-coa carboxylase, alpha subunit protein
           [Ralstonia solanacearum IPO1609]
          Length = 689

 Score = 69.8 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 41/221 (18%), Positives = 79/221 (35%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+           + +      A      K  +K ++   GVP+ P    
Sbjct: 92  AIHPGYGFLSENETFARACAEAGLVFVGPPASAIEAMGSKSAAKALMERAGVPLVPGYHG 151

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
           +             I  P +IK   GG   G+ V++  ++    L     ++SS    D+
Sbjct: 152 DNQDAAFLRAQADRIGYPVLIKASAGGGGKGMRVVEAGEAFEAALASVKREASSSFGDDR 211

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           +LIE+Y+     +   V  D   +   +           ++          PA  + LD 
Sbjct: 212 VLIEKYLTRPRHIEIQVFADGFGNAVYL-----FERDCSVQRRHQKVLEEAPAPGMTLDR 266

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +   A  A +A+G  G    +F+ D      +++E+N 
Sbjct: 267 RRAMGEAAVAAARAVGYVGAGTVEFIVDE-DGTFYFMEMNT 306


>gi|159471359|ref|XP_001693824.1| predicted protein [Chlamydomonas reinhardtii]
 gi|158283327|gb|EDP09078.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 440

 Score = 69.8 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 39/205 (19%), Positives = 82/205 (40%), Gaps = 20/205 (9%)

Query: 71  ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPY 128
           + E L +P   +   A   + DK  ++++++  G+P      V        +   +  P 
Sbjct: 114 LAEALGLP--SNTPQAVDNARDKHATREIMAKAGLPTPRHWKVTSEADVPKAAAHVGFPA 171

Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI---------EQYVDGIELTC 179
           VIKP+ G +SLG+I    ++ +           H   +++           Y+DG E+ C
Sbjct: 172 VIKPISGAASLGVIRANNEEDLMKAFKNREGSAHAPDVVVWGRVCGSIRGAYLDGAEVDC 231

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
            ++ D    V        D +     Y +   ++  P+ +P     ++  L+  A Q++G
Sbjct: 232 DLIFDNGRPVYGAIT---DNWPTVEPYFNETGSN-CPSVLPKAAQIDLMELSVRAVQSLG 287

Query: 240 CR-GISRSDFLFDPLSRKVFWLEIN 263
            + G+   +  F     +   +E+N
Sbjct: 288 FKLGVFHVECKFTSRGAR--LIEVN 310


>gi|260893146|ref|YP_003239243.1| acetyl-CoA carboxylase, biotin carboxylase [Ammonifex degensii KC4]
 gi|260865287|gb|ACX52393.1| acetyl-CoA carboxylase, biotin carboxylase [Ammonifex degensii KC4]
          Length = 448

 Score = 69.8 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 80/220 (36%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     I     + +    + A      K  +++ V++ GVPV P    
Sbjct: 77  AIHPGYGFLAENASFAEICSTCGLTFIGPPVEALEKMGSKALARKTVAAAGVPVVPGSEE 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
            I   +  +     +  P +IK   GG   G+ V+     +   L  + S         +
Sbjct: 137 VITDVKEALRLAAELGYPVLIKASAGGGGRGMRVVHTPAELEKALAAAQSEAEAAFGSPE 196

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+Y++    +   ++GD   ++  +            K             +  ++ 
Sbjct: 197 VYLEKYLEEPRHIEFQIVGDKYGNLIYLGERDCSIQRRNQKLL----EESPSVALTPELR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +   A  A QA+G   +   +FL D      +++E+N 
Sbjct: 253 RRMGEAAVKAAQAVGYHNVGTVEFLLDKHGN-FYFIEMNT 291


>gi|300768810|ref|ZP_07078705.1| acetyl-CoA carboxylase subunit A [Lactobacillus plantarum subsp.
           plantarum ATCC 14917]
 gi|300493637|gb|EFK28810.1| acetyl-CoA carboxylase subunit A [Lactobacillus plantarum subsp.
           plantarum ATCC 14917]
          Length = 440

 Score = 69.8 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 40/226 (17%), Positives = 75/226 (33%), Gaps = 31/226 (13%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+    A+     I +         L  DK R+K       VPV     +
Sbjct: 77  AIHPGYGFLAENADFAAMCAECGIAWIGPQTEQIKLMGDKARAKDFARQQAVPVLAGQSL 136

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSWNHGDQ 165
                     +   I  P V+K   GG   GI V+     +         ++++    D 
Sbjct: 137 QGLAWPDIKHAAAKIGFPLVLKASYGGGGKGIRVLTDVHELHQQLRAARQEAAASFLNDA 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +EQ++     +   V+G  +                 L+          PA I  +  
Sbjct: 197 MYLEQFLTTARHIEVQVLGTGTKLFIL------GDRDCSLQLHKQKVLEESPASILTETQ 250

Query: 225 KEV------QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +        Q LA   +Q++G       ++LF     + +++E+N 
Sbjct: 251 RRTLYDLSRQLLAGTHYQSLGT-----IEYLF--ADGQFYFMEMNT 289


>gi|254555701|ref|YP_003062118.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Lactobacillus
           plantarum JDM1]
 gi|7416012|dbj|BAA93643.1| biotin carboxylase [Lactobacillus plantarum]
 gi|254044628|gb|ACT61421.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Lactobacillus
           plantarum JDM1]
          Length = 440

 Score = 69.8 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 40/226 (17%), Positives = 75/226 (33%), Gaps = 31/226 (13%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+    A+     I +         L  DK R+K       VPV     +
Sbjct: 77  AIHPGYGFLAENADFAAMCAECGIAWIGPQTEQIKLMGDKARAKDFARQQAVPVLAGQSL 136

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSWNHGDQ 165
                     +   I  P V+K   GG   GI V+     +         ++++    D 
Sbjct: 137 QGLAWPDIKHAAAKIGFPLVLKASYGGGGKGIRVLTDVHELHQQLRAARQEAAASFLNDA 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +EQ++     +   V+G  +                 L+          PA I  +  
Sbjct: 197 MYLEQFLTTARHIEVQVLGTGTKLFIL------GDRDCSLQLHKQKVLEESPASILTETQ 250

Query: 225 KEV------QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +        Q LA   +Q++G       ++LF     + +++E+N 
Sbjct: 251 RRTLYDLSRQLLAGTHYQSLGT-----IEYLF--ADGQFYFMEMNT 289


>gi|84496656|ref|ZP_00995510.1| carbamoylphosphate synthetase large chain [Janibacter sp. HTCC2649]
 gi|84383424|gb|EAP99305.1| carbamoylphosphate synthetase large chain [Janibacter sp. HTCC2649]
          Length = 1105

 Score = 69.8 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 49/278 (17%), Positives = 93/278 (33%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG      L + G +V  +         D +              V  ++   +PD    
Sbjct: 29  SGTQACRVLREEGVRVILVNSNPATIMTDPEFADATYIEPITPEVVEKIIEKERPDAVLA 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G    +  +      +LE    P   + + A  L  D+   K VV  CG     S++
Sbjct: 89  TLGGQTALNCAIALHENGVLEKYNCPLIGANVEAIQLGEDRQLFKGVVERCGADSARSVI 148

Query: 113 VNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     + +   +  P V++P      LG      +  +          +   ++L+E+
Sbjct: 149 AHTMDDCIAAAEELGYPMVVRPSFTMGGLGSGFAHDETELRRMAGAGLQASPTTEVLLEE 208

Query: 171 YVDG-IELTCGVMGD-ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEV 227
            + G  E    VM D     V   ++   D           +S  V PA  +    Y+ +
Sbjct: 209 SIKGWKEYELEVMRDHKDNVVVVCSIENLDPMGVHT----GDSITVAPALTLTDREYQRL 264

Query: 228 QRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
           + +     + +G   G     F  +PL  ++  +E+N 
Sbjct: 265 RDVGIAIIREVGVDTGGCNIQFAINPLDGRIIVIEMNP 302



 Score = 57.1 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 48/289 (16%), Positives = 102/289 (35%), Gaps = 43/289 (14%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAI---- 71
           AL DAG+    I         D D S  L    L  +    V H    + G +  +    
Sbjct: 584 ALRDAGYDTVMINCNPETVSTDYDTSSRLYFEPLTLEDVLEVYHAEK-QAGPIAGVIVQL 642

Query: 72  -----------LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTM 118
                      L+   +P   +   A  L+ D+    +V++   +P             +
Sbjct: 643 GGQTPLGLARALKDAGVPIVGTSPEAIDLAEDRGAFGRVLAEAKLPAPKHGTAYSASEAL 702

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIEL 177
                I  P +++P       G+ ++  D ++   + ++++ +    +L+++++ D IE+
Sbjct: 703 AVARDIGYPVLVRPSYVLGGRGMEIVYDDDTLVTYVERATTASPEHPVLVDRFLDDAIEI 762

Query: 178 TCGVMGDAS---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
              ++ D +   L      + ++  +S        ++  + PA +     + V+      
Sbjct: 763 DVDILYDGTEMYLGGVMEHIEEAGIHS------GDSACTLPPATLGNAEIELVRESTLKL 816

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283
            Q IG  G+    F        ++ LE N +   T     P +A   G 
Sbjct: 817 AQGIGVLGLMNVQFAL--AQDILYVLEANPRASRT----VPFVAKATGV 859


>gi|296331128|ref|ZP_06873602.1| carbamoyl phosphate synthase large subunit [Bacillus subtilis
           subsp. spizizenii ATCC 6633]
 gi|305674283|ref|YP_003865955.1| pyrimidine-specific carbamoyl-phosphate synthetase large subunit
           [Bacillus subtilis subsp. spizizenii str. W23]
 gi|296151772|gb|EFG92647.1| carbamoyl phosphate synthase large subunit [Bacillus subtilis
           subsp. spizizenii ATCC 6633]
 gi|305412527|gb|ADM37646.1| pyrimidine-specific carbamoyl-phosphate synthetase (large subunit)
           [Bacillus subtilis subsp. spizizenii str. W23]
          Length = 1071

 Score = 69.8 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 34/225 (15%), Positives = 80/225 (35%), Gaps = 13/225 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--QHLISPPYV 129
           L    +    + +     + D+ + +Q +   GVP                   IS P +
Sbjct: 646 LSARGVKILGTSLEDLDRAEDRDKFEQALGELGVPQPLGKTATSVDQAVSIASNISYPVL 705

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           ++P        + ++  ++ +   +  +   N    +LI++Y+ G E+    + D    V
Sbjct: 706 VRPSYVLGGRAMEIVYHEEELLHYMKNAVKINPQHPVLIDRYLTGKEIEVDAVSDGETVV 765

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               +   +           +S  V P + +  DI K++++      + +   G+    F
Sbjct: 766 IPGIMEHIERAGVHS----GDSIAVYPPQSLTEDIKKKIEQYTIALAKGLNIVGLLNIQF 821

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +      +V+ LE+N +   T     P ++   G     L   ++
Sbjct: 822 VLSQ--GEVYVLEVNPRSSRT----VPFLSKITGIPMANLATKVI 860



 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 47/297 (15%), Positives = 110/297 (37%), Gaps = 36/297 (12%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL++ G++V  ++ +                       +  ++   +PD     L G  G
Sbjct: 36  ALKEEGYEVILVNSNPATIMTDTEMADRVYIEPLTPEFLTRIIRKERPDAILPTLGGQTG 95

Query: 64  EDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFT 117
            +  V    + +L    +    + + A   + D+   + +++    PV  S +++     
Sbjct: 96  LNLAVELSERGVLAECGVEVLGTKLSAIQQAEDRDLFRTLMNDLNEPVPESEIIHSLEEA 155

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IE 176
            +    I  P +++P       G  +   +  +   +      +   Q L+E+ + G  E
Sbjct: 156 ENFVSQIGFPVIVRPAYTLGGTGGGICSNETELKEIVENGLKLSPVHQCLLEKSIAGYKE 215

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAH 235
           +   VM D+      I V   +     +   + +S  V P++ +    Y+ ++ ++    
Sbjct: 216 IEYEVMRDSQDHA--IVVCNMENID-PVGIHTGDSIVVAPSQTLSDREYQLLRNVSLKLI 272

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +A+G  G        DP S + + +E+N  P ++  S     +   GY   +L   +
Sbjct: 273 RALGIEGGCNVQLALDPDSFQYYIIEVN--PRVSRSS--ALASKATGYPIAKLAAKI 325


>gi|229002475|ref|ZP_04160564.1| Argininosuccinate lyase domain protein [Bacillus mycoides Rock3-17]
 gi|228758608|gb|EEM07742.1| Argininosuccinate lyase domain protein [Bacillus mycoides Rock3-17]
          Length = 393

 Score = 69.8 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 40/226 (17%), Positives = 89/226 (39%), Gaps = 24/226 (10%)

Query: 71  ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ--HLISPPY 128
           +     +P   + + A     +K+ ++  +    V       V   +  ++  ++I  P 
Sbjct: 75  LARKYGLP--RNSVQAIRNCRNKLETRNCLKEAKVRQPKFEEVTSISDINKSLNIIGLPC 132

Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ-------LLIEQYVDGIELTCGV 181
           ++KP+    S G+   K    +    L+  SW    +       +L+E+++D  E +  +
Sbjct: 133 IVKPVDDSGSNGVRFCKTVAEVKEQTLEILSWKKNSRGQSTVQTVLLEEFIDAPEYSVEI 192

Query: 182 MG-DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
              +       I   K   + + +++      HV PAK+P D+ +E+Q     A +A+G 
Sbjct: 193 FSFEGKGKCVGITEKKLIGFPHFVEH-----QHVFPAKLPADVTREIQNTVEDALKAVGI 247

Query: 241 -RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYA-GYS 284
             G + ++    P       +EIN +       + P++   + G  
Sbjct: 248 TNGPTHTEVKLTPQG--CAIIEINAR---LAGGMIPKLIQISTGID 288


>gi|194365589|ref|YP_002028199.1| carbamoyl phosphate synthase large subunit [Stenotrophomonas
           maltophilia R551-3]
 gi|194348393|gb|ACF51516.1| carbamoyl-phosphate synthase, large subunit [Stenotrophomonas
           maltophilia R551-3]
          Length = 1080

 Score = 69.8 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 36/223 (16%), Positives = 91/223 (40%), Gaps = 12/223 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTMDSQHLISPPYV 129
           LE   +P   +   +  L+ D+ R +Q+V + G+   P+ +   ++  +     I  P V
Sbjct: 654 LEANGVPVIGTSPDSIDLAEDRERFQQLVDNLGLKQPPNRIARNDQEALLLAREIGYPLV 713

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLD 188
           ++P        + ++  +  +   +  +   ++   +L+++++D  +E+   ++ DA  +
Sbjct: 714 VRPSYVLGGRAMEIVYGESDLARYVRDAVKVSNDSPVLLDRFLDNAVEVDVDIIADAQGN 773

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           V    V   +       +S  +S  + P  +      E++R      +A+   G+  + F
Sbjct: 774 VLIGGV--MEHIEEAGVHSGDSSCSLPPYSLSAATQAELRRQVVELAKALNVVGLMNTQF 831

Query: 249 LF---DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
                D     ++ LE+N +   T     P ++   G    ++
Sbjct: 832 AIQTSDEGDDTIYLLEVNPRASRT----VPFVSKATGMPLAKI 870



 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 47/278 (16%), Positives = 101/278 (36%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL D G++V  +         D +            ++V  ++A  KPD    
Sbjct: 29  SGAQACKALRDEGYRVVLVNSNPATIMTDPEMADAVYIEPINWQTVEKIIAKEKPDALLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV--PVCPS 110
            + G    +  +      +LE   +    +   A  ++ D+   +  +   G+  P    
Sbjct: 89  TMGGQTALNCALDLADNGVLEKYNVELIGAKREAIRMAEDRELFRVAMGEIGLECPTAAV 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  ++ Q  +  P +I+P       G  +    + +   + +    +   ++L+E+
Sbjct: 149 AHTLDEALEIQTRVGYPTIIRPSFTLGGSGGGIAYNREELVDIVSRGLELSPTTEVLVEE 208

Query: 171 YVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            V G  E    V+ D + + +   ++   D           +S  V PA+ +    Y+ +
Sbjct: 209 SVLGWKEFEMEVVRDTADNCIIVCSIENLDPMGVHT----GDSITVAPAQTLTDKEYQRL 264

Query: 228 QRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + +V  +E+N 
Sbjct: 265 RDASIAVLRKIGVDTGGSNVQFGINPDTGRVVVIEMNP 302


>gi|73989258|ref|XP_860279.1| PREDICTED: similar to propionyl-Coenzyme A carboxylase, alpha
           polypeptide precursor isoform 6 [Canis familiaris]
          Length = 557

 Score = 69.8 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 73/221 (33%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      L   ++ +      A     DK+ SK +     V   P    
Sbjct: 138 AVHPGYGFLSENKEFAKCLAAEDVVFIGPDTHAIHAMGDKIESKLLAKKAKVNTIPGFDG 197

Query: 112 LVNRFTMDS--QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGD 164
           +V            I  P +IK   GG   G+ +   D+             +SS+   D
Sbjct: 198 VVKDADEAVRIAREIGYPVMIKASAGGGGKGMRIAWDDEETRDGFRFSSQEAASSFG-DD 256

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           +LLIE+++D    +   V+GD   +   +   +        K             +    
Sbjct: 257 RLLIEKFIDNPRHIEIQVLGDKHGNALWLNERECSIQRRNQK----VVEEAPSIFLDSKT 312

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +   A    +A+        +FL D      ++LE+N 
Sbjct: 313 RRAMGEQAVALAKAVKYSSAGTVEFLVDSKKN-FYFLEMNT 352


>gi|85711851|ref|ZP_01042906.1| acetyl-CoA carboxylase [Idiomarina baltica OS145]
 gi|85694248|gb|EAQ32191.1| acetyl-CoA carboxylase [Idiomarina baltica OS145]
          Length = 449

 Score = 69.8 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 78/222 (35%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      +E     +         L  DK+ + + +   GVP  P    
Sbjct: 77  AIHPGYGFLAENADFAEQVEKSGFVFVGPTADVIRLMGDKVSAIKAMKKAGVPCVPGSDG 136

Query: 114 NRFTMDS-----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGD 164
                D         I  P +IK   GG   G+ V++++  +   +     ++ +     
Sbjct: 137 PLDDDDERNIKLAKRIGYPIIIKAAGGGGGRGMRVVRQESELLSAIRMTQNEARAAFGNP 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E++++    +   V+ D   +   +            K          PA  I  +
Sbjct: 197 VVYMEKFLENPRHVEVQVLADGQGNAVHLGERDCSMQRRHQK-----VVEEAPAPGITPE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + K +      A   IG RG    +FL+   + + +++E+N 
Sbjct: 252 MRKFIGERCAKACIEIGYRGAGTFEFLY--ENGEFYFIEMNT 291


>gi|310779981|ref|YP_003968313.1| 5-(carboxyamino)imidazole ribonucleotide synthase [Ilyobacter
           polytropus DSM 2926]
 gi|309749304|gb|ADO83965.1| 5-(carboxyamino)imidazole ribonucleotide synthase [Ilyobacter
           polytropus DSM 2926]
          Length = 375

 Score = 69.4 bits (169), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 39/198 (19%), Positives = 76/198 (38%), Gaps = 17/198 (8%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-QHLISPPYVI 130
           LE               +  DK + K+++    +P      V +  ++  +     P V 
Sbjct: 81  LEAKGKK-IFPSSRVIEIIQDKSKQKELLDEKNIPTSKWKKVTKDNLEELKKEFGFPVVQ 139

Query: 131 KPLKGG-SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLD 188
           K  KGG    G+ ++K +  I   +   S +        E++++   E+   V  + + D
Sbjct: 140 KSCKGGYDGRGVFILKDESDIEKMIQGDSFF--------EEFIECDKEIAVMVARNFNGD 191

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           +    V +  F       +++  T V PA+I  D  KE ++LA    +A+   GI   + 
Sbjct: 192 IATYPVVEMVFDD----KTNICDTVVAPARITEDQCKEAKKLALQCVEALDGVGIFGVEM 247

Query: 249 LFDPLSRKVFWLEINVQP 266
                  K+   E+  +P
Sbjct: 248 FLTK-EGKILINEVAPRP 264


>gi|301632306|ref|XP_002945230.1| PREDICTED: hypothetical protein LOC100498143 [Xenopus (Silurana)
           tropicalis]
          Length = 1123

 Score = 69.4 bits (169), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 39/227 (17%), Positives = 80/227 (35%), Gaps = 31/227 (13%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+      +E     +      +  +  DK+ +KQ +   GVP  P    
Sbjct: 77  AIHPGYGFLAENADFAERVEKSGFQFIGPTSESIRVMGDKVSAKQAMIRAGVPCVPGSDG 136

Query: 111 ------ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSS 159
                 + + R        I  P +IK   GG   G+ V+  + ++   +         +
Sbjct: 137 ELPDDPVQIRR----VAKAIGYPVIIKAAGGGGGRGMRVVHTEAALVNAVQMTKTEAGVA 192

Query: 160 WNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
           +     + +E+Y+ +   +   VM D   +   +            K          PA 
Sbjct: 193 FG-NPAVYMEKYLQNPRHIEIQVMADKFKNAVYLGERDCSMQRRHQK-----VIEEAPAP 246

Query: 219 -IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            I   + + +      A + IG RG    +FL+   + + +++E+N 
Sbjct: 247 GIARKLIERIGERCVAACKKIGYRGAGTFEFLY--ENGEFYFIEMNT 291


>gi|296333409|ref|ZP_06875862.1| acetyl-CoA carboxylase biotin carboxylase subunit [Bacillus
           subtilis subsp. spizizenii ATCC 6633]
 gi|305675085|ref|YP_003866757.1| acetyl-CoA carboxylase biotin carboxylase subunit [Bacillus
           subtilis subsp. spizizenii str. W23]
 gi|296149607|gb|EFG90503.1| acetyl-CoA carboxylase biotin carboxylase subunit [Bacillus
           subtilis subsp. spizizenii ATCC 6633]
 gi|305413329|gb|ADM38448.1| acetyl-CoA carboxylase biotin carboxylase subunit [Bacillus
           subtilis subsp. spizizenii str. W23]
          Length = 450

 Score = 69.4 bits (169), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 87/221 (39%), Gaps = 18/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     + E + + +      A +    K  +++ +   GVP+ P    
Sbjct: 77  AIHPGYGFLAENADFAELCEEVNVTFVGPSADAISKMGTKDVARETMKQAGVPIVPGSQG 136

Query: 111 ILVNRFTMDS-QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-----SSSWNHGD 164
           I+ N     S  + I  P +IK   GG   GI V + ++ +   +       ++++    
Sbjct: 137 IIENVEEAVSLANEIGYPVIIKATAGGGGKGIRVARTEEELINGIKITQQEAATAFG-NP 195

Query: 165 QLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            + IE+Y++    +   V+ D   +   +            K             +  +I
Sbjct: 196 GVYIEKYIEDFRHVEIQVLADNYGNTIHLGERDCSIQRRLQKLL----EESPSPALDSEI 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +++   A  A +A+G  G    +F++D   ++ +++E+N 
Sbjct: 252 REQMGDAAVKAAKAVGYTGAGTVEFIYDYKEQRYYFMEMNT 292


>gi|226313683|ref|YP_002773577.1| pyruvate carboxylase [Brevibacillus brevis NBRC 100599]
 gi|226096631|dbj|BAH45073.1| pyruvate carboxylase [Brevibacillus brevis NBRC 100599]
          Length = 1148

 Score = 69.4 bits (169), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 47/280 (16%), Positives = 106/280 (37%), Gaps = 32/280 (11%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAG---FKVSQIDVDRSVGLVLAHLKPDLAFNV 57
           +AV     S +  VS+   KA  S L  AG    +   +D+  S+  +      D     
Sbjct: 33  VAV----YSEQDNVSIHRFKADESYLVGAGKGPIEAY-LDI-ESIIEIAKRNDID----A 82

Query: 58  LHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
           +H  +G   E+       +   I +            DK+ ++++    G+PV P     
Sbjct: 83  IHPGYGFLAENADFAKRCQEEGIIFIGPSPELIDKFGDKVEARRLAIEAGIPVIPGTPEP 142

Query: 115 RFTMDSQHLI----SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD----QL 166
             T+    L       P +IK + GG   G+ +++  + +   L ++ S         ++
Sbjct: 143 IETLQEALLFAKEYGYPIIIKGVSGGGGRGMRIVRSQEELQDSLDRARSEARSSFGNAKV 202

Query: 167 LIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIY 224
            +E+Y++    +   ++GD   ++  +           ++        V P+  +   + 
Sbjct: 203 YLERYLEQPKHIEVQILGDNHGNIVHLYE-----RDCSVQRRHQKVVEVAPSLSLDDKLR 257

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +++ + A    +  G       +FL  P  ++ +++E+N 
Sbjct: 258 EDICQAALTLMKKAGYSNAGTVEFLLTP-DKRFYFIEVNP 296


>gi|305665705|ref|YP_003861992.1| ribosomal protein S6 modification protein [Maribacter sp. HTCC2170]
 gi|88710464|gb|EAR02696.1| ribosomal protein S6 modification protein [Maribacter sp. HTCC2170]
          Length = 296

 Score = 69.4 bits (169), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 50/277 (18%), Positives = 116/277 (41%), Gaps = 38/277 (13%)

Query: 14  VSLS--SGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAI 71
           VS++  S K  A   E  G  +  ID  +   + L   +P + +   +     D ++  I
Sbjct: 8   VSMNVYSTKRIAEEAEKLGHYIELIDHTK-CSVKLGSSRPKVYYLNENVTNAFDAIIPRI 66

Query: 72  --------------LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL-VNRF 116
                          E+  + ++ +  L+ + + +K+R+ Q++S   +P+  ++  +N  
Sbjct: 67  GAKVTRHGAAIVKQFEMNGV-FSTAKALSISRARNKVRTLQILSRKHIPIPDTLFSINPD 125

Query: 117 TMDSQHLI--SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD- 173
            +  Q  +   PP +IK  +G   LG+I+ + ++S     +  + +     +L+++Y++ 
Sbjct: 126 DIKEQIELLGGPPVIIKLQEGTQGLGVILAESEKSAKS--IIDTFYKMDTSILLQKYIEE 183

Query: 174 --GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
             G ++   V+G+  +   +   P  +F S   +        + P +         + +A
Sbjct: 184 SNGEDIRIFVVGNKVIASMKRTSPVDEFRSNVHRGGLTEGIEITPKE---------KYIA 234

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268
             A + +G  G++  D +          LE+N  PG+
Sbjct: 235 LKATEYLGL-GVAGVDLIRSKKG--PLLLEVNASPGL 268


>gi|312622581|ref|YP_004024194.1| phosphoribosylaminoimidazole carboxylase, atpase subunit
           [Caldicellulosiruptor kronotskyensis 2002]
 gi|312203048|gb|ADQ46375.1| phosphoribosylaminoimidazole carboxylase, ATPase subunit
           [Caldicellulosiruptor kronotskyensis 2002]
          Length = 403

 Score = 69.4 bits (169), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 39/196 (19%), Positives = 74/196 (37%), Gaps = 14/196 (7%)

Query: 73  ELLEIPY-THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIK 131
           +L +  Y  +       +  DK + KQ+  S  +PV     V    +        P V K
Sbjct: 108 DLYDKGYHIYPSPYCLEVIQDKYKQKQMFKSANLPVPRFEKVTHLDVSFFEKFGFPCVQK 167

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVT 190
             KGG     +V+  D+     +L++ S+       +E+ VD   EL   V  +   DV 
Sbjct: 168 ASKGGYDGRGVVVINDKEDLNKVLETESF-------VEELVDIKKELAVMVARNKRGDVK 220

Query: 191 EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
              V +  F     + +++    V PA+I   I +  + +A    + +   G+   +   
Sbjct: 221 SYPVVEMIF----EQSANILDFLVAPARIDEKIAQRAKEVAIKVVEVLDGVGVFGVELFL 276

Query: 251 DPLSRKVFWLEINVQP 266
                ++   E+  +P
Sbjct: 277 TK-DDEILINEVAPRP 291


>gi|226939548|ref|YP_002794621.1| PurT [Laribacter hongkongensis HLHK9]
 gi|226714474|gb|ACO73612.1| PurT [Laribacter hongkongensis HLHK9]
          Length = 400

 Score = 69.4 bits (169), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 44/280 (15%), Positives = 95/280 (33%), Gaps = 44/280 (15%)

Query: 19  GKACASALEDAGFKVSQID--------------------VDRSVGLVLAHLKPDLAFNVL 58
           GK  A AL+  G +V  +D                       ++  ++   +P L    +
Sbjct: 23  GKEVAIALQRLGCEVIAVDRYADAPAMQVAHRSHVIAMTDGAALRALVEAERPALIVPEI 82

Query: 59  HGNFGEDGLVQAILEL--LEIPYTHSGILASALSMDKM-RSKQVVSSCGVPVCPSIL--- 112
                E      +LE+    +        A+ L+M++    +      G+P  P      
Sbjct: 83  -----EAIATATLLEIEAAGLAEVIPTARAANLTMNREGIRRLAAEELGLPTSPYAFADS 137

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH--GDQLLIEQ 170
           ++         I  P V+KP+   S  G  V++    +      +++       ++++E 
Sbjct: 138 LDSLQAAIDAGIGYPCVVKPVMSSSGKGQSVLRSPADVKPAWDYAAAGGRVDNGRVIVEG 197

Query: 171 YVD----GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE 226
           +VD      +LT   +G           P        L+ +        P  +     + 
Sbjct: 198 FVDFDYEITQLTVRALGADGQPEIRFCEPVG-----HLQKNGDYVESWQPQPMSPLARER 252

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
            + +A    +A+G RG+   +        +V++ E++ +P
Sbjct: 253 ARDVAGRVVEALGGRGLFGVELFV--KGDEVWFSEVSPRP 290


>gi|254456054|ref|ZP_05069483.1| phosphoribosylamine--glycine ligase [Candidatus Pelagibacter sp.
           HTCC7211]
 gi|207083056|gb|EDZ60482.1| phosphoribosylamine--glycine ligase [Candidatus Pelagibacter sp.
           HTCC7211]
          Length = 421

 Score = 69.4 bits (169), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 26/171 (15%), Positives = 64/171 (37%), Gaps = 28/171 (16%)

Query: 20  KACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPY 79
           +A    L++    +  I  ++                +++G       +   LE   I  
Sbjct: 52  EAIHKFLDENKIDLVVIGPEQ---------------PLVNG-------IVDYLEKFNIKV 89

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI---SPPYVIKPLKGG 136
                +AS L   K+ +K++     +P     ++    +D++  +     P VIK     
Sbjct: 90  FGPNKIASQLEGSKIFTKKLCEDYNIPTAKFAVL-ENKLDAKKFLENSKYPNVIKADNLA 148

Query: 137 SSLGIIVIKKDQSIPLDLLQSS--SWNHGDQLLIEQYVDGIELTCGVMGDA 185
           S  G+ +   +    + + +     +     +LIE++++G E++  ++ D 
Sbjct: 149 SGKGVYICNNENESNVAIEEIFNGKFGVAKNILIEEFLEGEEMSYFIVSDG 199


>gi|159129416|gb|EDP54530.1| carbamoyl-phosphate synthase, large subunit [Aspergillus fumigatus
           A1163]
          Length = 1175

 Score = 69.4 bits (169), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 58/291 (19%), Positives = 105/291 (36%), Gaps = 41/291 (14%)

Query: 6   GGIS----SEREVSLSSGKACASALEDAGF--------------------KVSQIDVDRS 41
           GG+S     E + S   G     AL++AG                     +V  + V   
Sbjct: 108 GGLSIGQAGEFDYS---GSQALKALKEAGVKSVLINPNIATIQTDHKLADEVYYLPVTPE 164

Query: 42  -VGLVLAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRS 96
            V  V+   +PD  F    G    +  VQ     I E   +    + I     S D+   
Sbjct: 165 YVTHVIERERPDGIFLSFGGQTALNLGVQMNRMGIFERYGVRVLGTSIRTLETSEDRDLF 224

Query: 97  KQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154
            Q +    +P+  SI VN     + +   +  P +++       LG    +  + +    
Sbjct: 225 AQALKEINIPIAESIAVNTVDEALKAAESVGYPIIVRSAYALGGLGSGFAENPEELK--N 282

Query: 155 LQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTH 213
           L S S     Q+L+E+ + G  E+   V+ DA+ +   I V   + +   L   + +S  
Sbjct: 283 LASRSLTLAPQILVEKSLKGWKEVEYEVVRDAANN--CITVCNMENFD-PLGIHTGDSIV 339

Query: 214 VLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
           V P++ +  + Y  ++  A    + +G  G     +   P       +E+N
Sbjct: 340 VAPSQTLSDEEYHMLRTAAIKIVRHLGVVGECNVQYALQPDGLDYRVIEVN 390



 Score = 53.2 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 26/176 (14%), Positives = 59/176 (33%), Gaps = 12/176 (6%)

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--QHLISPPYVI 130
           E        +       + D+ +  Q++ S GV       +            +  P ++
Sbjct: 738 ETGGAHVLGTDPQDIDKAEDRHKFSQILDSIGVDQPAWKELTSVAEAERFAESVGYPVLV 797

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL----TCGVMGDAS 186
           +P    S   + VI     +   LL +S+ +    ++I ++++G +          G   
Sbjct: 798 RPSYVLSGAAMSVIYSGDELKEKLLNASAVSPDHPVVITKFIEGAQEIDIDAVASNGKLL 857

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
           L      V  +  +S +       +  + PA +   +   V+ +A    +A    G
Sbjct: 858 LHAVSEHVEPAGVHSGDA------TLVLPPASLDEKVMGRVKEIAEKVAKAWNITG 907


>gi|170733678|ref|YP_001765625.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia
           cenocepacia MC0-3]
 gi|169816920|gb|ACA91503.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia
           cenocepacia MC0-3]
          Length = 404

 Score = 69.4 bits (169), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 52/277 (18%), Positives = 97/277 (35%), Gaps = 38/277 (13%)

Query: 19  GKACASALEDAGFKVSQID----------------VDRSVGLVLAHL----KPDLAFNVL 58
           GK    AL+  G +V  +D                +D +    L  +    +P L    +
Sbjct: 27  GKEVIIALQRLGVEVIAVDRYQDAPGHQVAHRAHVIDMTDPAALRAIIEAERPHLIVPEI 86

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKM-RSKQVVSSCGVPVCPSILVNRFT 117
                 D L  A +E   +        A+ L+M++    +      G+P  P    + F 
Sbjct: 87  EAI-ATDAL--AAIETAGLAEVIPTARATQLTMNREGIRRLAAEELGLPTSPYAFADSFE 143

Query: 118 MDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH--GDQLLIEQYVD 173
             S  +  I  P V+KP+   S  G  V+K D  +      + +       ++++E +VD
Sbjct: 144 AFSAAVAKIGMPCVVKPVMSSSGKGQSVVKTDADVKPAWDYAMAGGRVNHGRVIVEGFVD 203

Query: 174 ----GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
                 +LT   +  A+LD                 Y         P  +     K+ + 
Sbjct: 204 FDYEITQLTVRAIDPATLDTRTYFCEPVGHVQVAGDY----VESWQPQPMSAAALKKSRE 259

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
           +A    +A+G RG+   +         V++ E++ +P
Sbjct: 260 IAHKVTEALGGRGLFGVELFVR--GDDVWFSEVSPRP 294


>gi|113868420|ref|YP_726909.1| carbamoyl phosphate synthase large subunit [Ralstonia eutropha H16]
 gi|113527196|emb|CAJ93541.1| carbamoylphosphate synthase, large subunit [Ralstonia eutropha H16]
          Length = 1082

 Score = 69.4 bits (169), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 27/198 (13%), Positives = 72/198 (36%), Gaps = 8/198 (4%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYV 129
           LE   +P   +       + D+ R ++++   G+   P+               I  P V
Sbjct: 658 LEANGVPIIGTSPDMIDAAEDRERFQKLLQELGLRQPPNRTARAEDEALRLAEEIGYPLV 717

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++ + + +   + ++   ++   +L+++++ D IE     + D    
Sbjct: 718 VRPSYVLGGRAMEIVHEPRDLERYMREAVKVSNDSPVLLDRFLNDAIECDVDAISDGKRV 777

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                +   +       +S  ++  + P  +  +   E++R      +A+   G+    F
Sbjct: 778 FIGGVMEHIEQAGV---HSGDSACSLPPYSLSAETVAELKRQTAAMAKALNVIGLMNVQF 834

Query: 249 LFDPLSR--KVFWLEINV 264
                     V+ LE+N 
Sbjct: 835 AIQQNDGVDTVYVLEVNP 852



 Score = 60.5 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 49/285 (17%), Positives = 94/285 (32%), Gaps = 42/285 (14%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + GFKV  +              DV          V  ++   +PD    
Sbjct: 29  SGAQACKALREEGFKVILVNSNPATIMTDPNTADVTYIEPITWEVVERIIEKERPDAILP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G    +  +      +L+  ++    +   A   + D+ + K  ++  G+    S  
Sbjct: 89  TMGGQTALNCALDLHRHGVLDKYKVELIGASPEAIDKAEDRQKFKDAMTKIGLGSAKSGI 148

Query: 111 -------ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
                  + V             P VI+P       G  +    +       +    +  
Sbjct: 149 AHSMDEAMAVQSRIAQETGTGGYPIVIRPSFTLGGSGGGIAYNREEFEEICKRGLDLSPT 208

Query: 164 DQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPAK-IP 220
            +LLIE+ + G  E    V+ D   +   I   ++ D           +S  V PA+ + 
Sbjct: 209 RELLIEESLLGWKEYEMEVVRDKKDNCIIICSIENLDPMGIHT----GDSITVAPAQTLT 264

Query: 221 LDIYKEVQRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
              Y+ ++  +    + IG   G S   F  +P   ++  +E+N 
Sbjct: 265 DKEYQILRNASLAVLREIGVDTGGSNVQFSINPKDGRMIVIEMNP 309


>gi|59712994|ref|YP_205770.1| acetyl-CoA carboxylase biotin carboxylase subunit [Vibrio fischeri
           ES114]
 gi|59481095|gb|AAW86882.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Vibrio fischeri
           ES114]
          Length = 447

 Score = 69.4 bits (169), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 82/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         +  DK+ +   +   GVP  P    
Sbjct: 77  AVHPGYGFLSENADFAEQVERSGFIFVGPKAETIRMMGDKVSAITAMKKAGVPCVPGSDG 136

Query: 112 -LVNRFTMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
            L N    +  H   I  P +IK   GG   G+ V++ ++ +   +     ++ +  + +
Sbjct: 137 PLDNDEAKNKAHAKRIGYPVIIKASGGGGGRGMRVVRAEKDLVEAIAMTRAEAKACFNNE 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E++++    +   V+ D   +   +            K          PA  I  +
Sbjct: 197 MVYMEKFLENPRHIEVQVLADGQGNAIHLGERDCSMQRRHQK-----VVEEAPAPGITEE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + K +      A   IG RG    +FL+   + + +++E+N 
Sbjct: 252 MRKYIGERCTRACLEIGYRGAGTFEFLY--ENGEFYFIEMNT 291


>gi|325294821|ref|YP_004281335.1| phosphoribosylglycinamide formyltransferase 2 [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325065269|gb|ADY73276.1| Phosphoribosylglycinamide formyltransferase 2 [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 393

 Score = 69.4 bits (169), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 52/283 (18%), Positives = 99/283 (34%), Gaps = 58/283 (20%)

Query: 23  ASALEDAGFKVSQID----------------VDRSVGLVLAHL----KPDLAFNVLHGNF 62
             AL   G +V  +D                +D   G  + ++    KPD     +    
Sbjct: 28  LEALR-LGIEVIAVDNYQFAPAQQVAQRFYVIDMKDGSQIKNIVYREKPDFIVPEIEAI- 85

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV------VSSCGVPVCPSILVNRF 116
             D  V  +LEL E       ++  A ++ K    ++          G+        +  
Sbjct: 86  --DTDV--LLELEE---EGFNVVPCAKAV-KYTMDRIGIRRLAAEELGLKTSKYRFASDL 137

Query: 117 T--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD--LLQSSSWNHGDQLLIEQYV 172
                +   I  P V+KP+   S  G  +++K++ I       Q ++   G+ ++IE+++
Sbjct: 138 ESYKKAVKEIGLPVVVKPVMSSSGKGQSIVRKEEEIDEAFFYAQRNARGKGNAVIIEEFI 197

Query: 173 D----GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           D       LT       +L    I   + D   Y+  +         P  +     K  +
Sbjct: 198 DFDFEITLLTVRTKEQGTLFCEPIGHVQVDG-DYQESW--------QPQPMTETALKRAK 248

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP---GM 268
            +A     A+G  GI   +F       +V++ E++ +P   GM
Sbjct: 249 EMAKAITDALGGYGIFGCEFFVKE--DEVWFSEVSPRPHDTGM 289


>gi|254490251|ref|ZP_05103441.1| RimK-like ATP-grasp domain family [Methylophaga thiooxidans DMS010]
 gi|224464598|gb|EEF80857.1| RimK-like ATP-grasp domain family [Methylophaga thiooxydans DMS010]
          Length = 492

 Score = 69.4 bits (169), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 32/191 (16%), Positives = 78/191 (40%), Gaps = 14/191 (7%)

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI----SPPYVIKPLKGGSS 138
              +     +K+  K+++++  +P+  S L+ R        +    + P V+K   G  S
Sbjct: 274 DPTSIIRCTNKIFLKELLAAHDLPMPESHLLYRNDQAGLDNLCETATFPLVMKIPDGAFS 333

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKS 197
           +G+I +K  + +         +     +L+++++    +   GV  + ++   +  + K 
Sbjct: 334 IGVIKVKNAEELRQQAAVF--FQQSAIILLQEFMYTDYDWRIGVFNNKAIYACQYFMSKG 391

Query: 198 --DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255
               Y++  K  + +           ++ ++V R+A  A + IG  G+   D        
Sbjct: 392 HWQIYNHNSKKGTDSGKSSAIPV--SEVPEKVIRIATKAAKLIG-DGLYGID--IKQSGN 446

Query: 256 KVFWLEINVQP 266
           ++  +EIN  P
Sbjct: 447 RIVIIEINDNP 457


>gi|218708498|ref|YP_002416119.1| carbamoyl phosphate synthase large subunit [Vibrio splendidus
           LGP32]
 gi|218321517|emb|CAV17469.1| Carbamoyl-phosphate synthase large chain [Vibrio splendidus LGP32]
          Length = 1076

 Score = 69.4 bits (169), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 47/278 (16%), Positives = 97/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D D              V  ++A  KPD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPDMADATYIEPIQWEVVRNIIAKEKPDAVLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV--PVCPS 110
            + G    +  +      +LE   +    +   A   + D+ R  + + + G+  P   +
Sbjct: 89  TMGGQTALNCALDLEKHGVLEEFGVEMIGATADAIDKAEDRSRFDKAMKAIGLECPTADT 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                       ++  P +I+P       G  +    +       +    +  ++LLI++
Sbjct: 149 AKTMEEAYKVLDMVGFPCIIRPSFTMGGTGGGIAYNKEEFEEICRRGLDLSPTNELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + + +   A+   D           +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCAIENFDPMGIHT----GDSITVAPAQTLTDKEYQLM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P   ++  +E+N 
Sbjct: 265 RNASLAVLREIGVETGGSNVQFGINPKDGRMVIIEMNP 302



 Score = 63.2 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 34/197 (17%), Positives = 76/197 (38%), Gaps = 10/197 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH--LISPPYV 129
           LE   +P   +   A   + D+ R +  V   G+    +  V       +    I  P V
Sbjct: 653 LEAAGVPIIGTSPDAIDRAEDRERFQVAVDRLGLLQPENATVTTMEQAVEKSREIGFPLV 712

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  +Q +     ++ S ++   +L++ ++ D IE+    + D    
Sbjct: 713 VRPSYVLGGRAMEIVYDEQDLRRYFNEAVSVSNESPVLLDSFLDDAIEVDVDAICDGERV 772

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           V    +   +    +    S +S   LPA  +  +I   ++         +G RG+  + 
Sbjct: 773 VIGGIMEHIE----QAGVHSGDSACSLPAYTLSQEIQDVMREQVEKLAFELGVRGLMNTQ 828

Query: 248 FLFDPLSRKVFWLEINV 264
           F     + +V+ +E+N 
Sbjct: 829 FAV--KNNEVYLIEVNP 843


>gi|29833240|ref|NP_827874.1| urea amidolyase [Streptomyces avermitilis MA-4680]
 gi|29610362|dbj|BAC74409.1| putative urea amidolyase [Streptomyces avermitilis MA-4680]
          Length = 1171

 Score = 69.4 bits (169), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 79/221 (35%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   ED       E   I +         L   K  ++    + GVP+ P    
Sbjct: 78  AIHPGYGFLSEDAAFARRCEDAGIVFVGPTPEQLELFGAKHTARAAAEAAGVPLAPGTGL 137

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL-----DLLQSSSWNHGDQ 165
           +      +D+   I  P ++K   GG  +G+   +    +         + ++S++    
Sbjct: 138 LASLDEALDAASRIGYPVMLKATGGGGGIGMSACRSAAELAESWERVRRVTAASFSSAG- 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           + +E+ V+    +   V GD    V  +           L+  +       PA  +P  +
Sbjct: 197 IFLERLVEHARHVEVQVFGDGRGRVVTL-----GDRDCSLQRRNQKVVEEAPAPGLPSHV 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              +   A     A+G R     +F++D    + ++LE+N 
Sbjct: 252 RDHLASAARDLCAAVGYRSAGTVEFVYDAAREEAYFLEVNT 292


>gi|298571704|gb|ADI87856.1| hypothetical protein AKSOIL_0348 [uncultured bacterium Ak20-3]
          Length = 302

 Score = 69.4 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 59/274 (21%), Positives = 112/274 (40%), Gaps = 39/274 (14%)

Query: 16  LSSGKACASALEDAGFKVSQID----------VDRSVGLVLAHL-KPDLAFN---VLHGN 61
           L S +    A +D G  V  ID          +  ++      L + D+        H  
Sbjct: 12  LYSTQRLVQAAKDRGCDVKVIDYLRCYMNITAMKPTIVYAGKDLGEADVIIPRIGASHTF 71

Query: 62  FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ 121
           +G    V    E + I  T +   A   S DK+RS Q++S  G+ +  +   +  T D +
Sbjct: 72  YG--AAVVRQFETMGI-VTLNRAQAITRSRDKLRSLQILSQKGIDLPVTGCAH-STKDIE 127

Query: 122 HLI----SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD---G 174
            LI     PP V+K L+G   +G+++ +  ++     +  +  +    +L+++++    G
Sbjct: 128 GLIKIAGGPPLVVKLLEGTQGIGVVLAETKKAAES--VIEAFRDLDANILVQEFIKEASG 185

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
            ++ C V+GD  +  + I   K   +   L      +          +I +E + +A  A
Sbjct: 186 TDIRCFVVGDKVV-ASMIRKAKDGEFRSNLHRGGKGTQI--------EITEEERAVALKA 236

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268
             A+G  G++  D      +R    LE+N  PG+
Sbjct: 237 VAAMGL-GVAGVD--ILRSNRGPLVLEVNSTPGL 267


>gi|326317505|ref|YP_004235177.1| acetyl-CoA carboxylase, biotin carboxylase [Acidovorax avenae
           subsp. avenae ATCC 19860]
 gi|323374341|gb|ADX46610.1| acetyl-CoA carboxylase, biotin carboxylase [Acidovorax avenae
           subsp. avenae ATCC 19860]
          Length = 682

 Score = 69.4 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 76/220 (34%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+       E   I +      + A   DK+ SK++ +   V   P    
Sbjct: 77  AIHPGYGFLSENEAFAQRCEDEGIAFIGPKAHSIAAMGDKIASKKLANEAKVNTIPGWND 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD--LLQSSSWNH--GDQ 165
            I      ++    I  P +IK   GG   G+ V   D+         Q+ + N    D+
Sbjct: 137 AIESAERAVEIARDIGYPVMIKASAGGGGKGLRVAYNDKEALEGFTACQNEARNSFGDDR 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE++V     +   V+GDA  +V  +   +        K             I     
Sbjct: 197 IFIEKFVQQPRHIEIQVLGDAHGNVIYLNERECSIQRRHQK----VIEEAPSPFISDATR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K +   A    +A+  +     +F      +  ++LE+N 
Sbjct: 253 KAMGEQAVALAKAVKYQSAGTVEF-VVGKDQDFYFLEMNT 291


>gi|218437868|ref|YP_002376197.1| cyanophycin synthetase [Cyanothece sp. PCC 7424]
 gi|218170596|gb|ACK69329.1| cyanophycin synthetase [Cyanothece sp. PCC 7424]
          Length = 879

 Score = 69.4 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 30/125 (24%), Positives = 53/125 (42%), Gaps = 5/125 (4%)

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSIL---VNRFTMDSQHLISPPYVIKPLKGGS 137
           HSGILA  L+ DK  +K ++   G+PV    +   V+      + +   P V+KPL G  
Sbjct: 208 HSGILAVELACDKEGTKTILQDAGIPVPKGTVIQYVDELAEAIEDVGGFPIVVKPLDGNH 267

Query: 138 SLGIIV-IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK 196
             GI + +   +        +S+ +    ++IE+Y  G +    V+ +  L      +P 
Sbjct: 268 GRGITIDVNSWEEAEEAYDLASTASKTRSVIIERYYRGSDHRVLVI-NGKLVAVAERIPA 326

Query: 197 SDFYS 201
                
Sbjct: 327 RVIGD 331


>gi|167844892|ref|ZP_02470400.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia
           pseudomallei B7210]
          Length = 396

 Score = 69.4 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 48/277 (17%), Positives = 92/277 (33%), Gaps = 38/277 (13%)

Query: 19  GKACASALEDAGFKVSQID----------------VDRSVGLVLAHL----KPDLAFNVL 58
           GK    AL+  G +V  +D                +D +    L  L    +P L    +
Sbjct: 27  GKEVIIALQRLGVEVIAVDRYPNAPGHQVAHRAHVIDMTDPDALRALVDAERPHLVVPEI 86

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKM-RSKQVVSSCGVPVCPSILVNRFT 117
                 D L  A +E   +        A+ L+M++    +      G+P  P      F 
Sbjct: 87  EAI-ATDAL--AAIEAAGVCEVIPTARATQLTMNREGIRRLAAEELGLPTSPYAFAQSFD 143

Query: 118 MDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH--GDQLLIEQYV- 172
             +  +  I  P V+KP+   S  G  V++ +  I      + +       ++++E ++ 
Sbjct: 144 EFAAAVARIGFPCVVKPVMSSSGKGQSVVRSEADIEPAWRYAMAGGRVNHGRVIVEGFIR 203

Query: 173 ---DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
              +  +LT   +  AS                   Y         P  +     +  + 
Sbjct: 204 FDYEITQLTVRAIDPASGQTRTSFCAPIGHLQVAGDY----VESWQPQPMSAKALERSRD 259

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
           +A     A+G RGI   +         V++ E++ +P
Sbjct: 260 IAHRVTSALGGRGIFGVELFVR--GDDVWFSEVSPRP 294


>gi|126649699|ref|ZP_01721935.1| carbamoyl-phosphate synthase large subunit [Bacillus sp. B14905]
 gi|126593418|gb|EAZ87363.1| carbamoyl-phosphate synthase large subunit [Bacillus sp. B14905]
          Length = 1065

 Score = 69.4 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 56/302 (18%), Positives = 116/302 (38%), Gaps = 37/302 (12%)

Query: 20  KACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFNVL 58
           +AC S L++ G++V  I+ + +                     V  +L   +PD     L
Sbjct: 32  QACLS-LKEEGYRVILINSNPATIMTDTEIADKVYIEPISLDFVSRILRKERPDAILPTL 90

Query: 59  HGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
            G  G +  ++     IL+ L I    + + A   + D+   + ++   G PV  S +++
Sbjct: 91  GGQTGLNMAIELDQSGILDELGIEILGTKLDAIHKAEDRDLFRNLMYELGAPVPESDIIH 150

Query: 115 RFTMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                 + +  I  P +++P       G  +   DQ +   +     ++   Q L+E+ +
Sbjct: 151 SLDEAKKFVVKIGYPVIVRPAFTLGGTGGGICYNDQDLEEIVTSGLKYSPVTQCLLEKSI 210

Query: 173 DG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRL 230
            G  E+   VM DA  +   I V   +     +   + +S  V P + +     + ++ +
Sbjct: 211 AGYKEIEYEVMRDAVDNA--IVVCNMENVD-PVGIHTGDSIVVAPTQTLSDRENQMLRNI 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    +A+   G        DP S   + +E+N  P ++  S     +   GY   +L  
Sbjct: 268 SLDIIRALKIEGGCNVQLALDPYSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325



 Score = 59.8 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 22/217 (10%), Positives = 75/217 (34%), Gaps = 20/217 (9%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC--PSILVNRFTMDSQHLISPPYV 129
           L    +    + +     + ++ + +Q +    +P     + +     +     +  P +
Sbjct: 646 LAANGVKILGTSLEDIDRAENRDKFEQALRDLDIPQPQGETAVSTVEALAIGERLGFPVL 705

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS--- 186
           ++P        + ++   + +   +  +   +    +L+++Y+ G E+    + D     
Sbjct: 706 VRPSYVLGGRAMEIVYNQEELKHYMENAVEASPDHPVLVDRYLTGQEIEVDAICDGENVL 765

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISR 245
           +      + ++  +S        +S  V P + +       +        + +G  G+  
Sbjct: 766 IPGIMEHIERAGVHS-------GDSISVYPPQKLTQHQKDTLVDYTTRLAKGLGIVGLMN 818

Query: 246 SDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277
             ++      +VF +E+N       P ++ ++  P  
Sbjct: 819 IQYVISQ--GEVFVIEVNPRSSRTVPFLSKITNIPMA 853


>gi|300310711|ref|YP_003774803.1| carbamoyl-phosphate synthase large subunit [Herbaspirillum
           seropedicae SmR1]
 gi|300073496|gb|ADJ62895.1| carbamoyl-phosphate synthase (large chain) protein [Herbaspirillum
           seropedicae SmR1]
          Length = 1077

 Score = 69.4 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 50/278 (17%), Positives = 102/278 (36%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + GFKV  +         D +            ++V  ++A  KPD    
Sbjct: 29  SGAQACKALREEGFKVILVNSNPATIMTDPEMADATYIEPITWQAVERIIAKEKPDAILP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      +LE  ++    +   A   + D+ + K+ ++  G+    S +
Sbjct: 89  TMGGQTALNCALDLHRHGVLEKYKVELIGATPEAIDKAEDRSKFKEAMTKIGLGSARSGV 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +    +   Q  I  P +I+P       G  +    +       +    +   +LLIE+
Sbjct: 149 SHTMEESWAVQKTIGFPVIIRPSFTMGGTGGGIAYNAEEFETICKRGLEASPTSELLIEE 208

Query: 171 YVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + + +   ++   D           +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKADNCIIVCSIENLDPMGVHT----GDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P   ++  +E+N 
Sbjct: 265 RNASLAVLREIGVDTGGSNVQFSVNPADGRMIVIEMNP 302



 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 30/202 (14%), Positives = 75/202 (37%), Gaps = 12/202 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           LE   +P   +       + D+ R ++++   G+   P+         +     I  P V
Sbjct: 649 LEANGVPIVGTSPDMIDAAEDRERFQKLLQDLGLRQPPNRTARTEADALQLAQEIGYPLV 708

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++ + + +   + ++   +H   +L+++++ D IE+    + D    
Sbjct: 709 VRPSYVLGGRAMEIVHEQRDLERYMREAVKVSHDSPVLLDRFLNDAIEVDVDCLSDGERT 768

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                +   +       +S  ++  + P  +  D  +E++R   L  + +   G+    F
Sbjct: 769 FIGGVMEHIEQAGV---HSGDSACSLPPYSLSKDTIEELKRQTALMAKGLNVVGLMNVQF 825

Query: 249 LFDPLS------RKVFWLEINV 264
                         VF LE+N 
Sbjct: 826 AIQQSEVDGKTVDTVFVLEVNP 847


>gi|296436563|gb|ADH18733.1| acetyl-CoA carboxylase biotin carboxylase subunit [Chlamydia
           trachomatis G/11222]
          Length = 457

 Score = 69.4 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 83/220 (37%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---S 110
            +H  +G   E+    +I E   + +      + A   DK+ +KQ+      PV P    
Sbjct: 76  AVHPGYGFLSENANFASICESCGLTFIGPSAESIATMGDKVAAKQLAKKIKCPVIPGSEG 135

Query: 111 ILVNRFT-MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSWNHGDQ 165
           ++ +    +     I  P VIK + GG   GI ++++             ++ +  +   
Sbjct: 136 VVKDEVEGIRIAEKIGFPIVIKAVAGGGGRGIRIVREKDEFYRAFTAARAEAEAGFNNPD 195

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE++++    L   V+GD   +   +            K             +  ++ 
Sbjct: 196 VYIEKFIENPRHLEVQVIGDKHGNYVYLGERDCTVQRRRQK----LIEETPSPILTPEMR 251

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +V ++A    ++ G   +   +FL D   R  +++E+N 
Sbjct: 252 AKVGKVAVDLARSAGYFSVGTVEFLLDKEKR-FYFMEMNT 290


>gi|224492462|emb|CAR53259.1| putative carbamoylphosphate synthase [Colletotrichum higginsianum]
          Length = 933

 Score = 69.4 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 52/289 (17%), Positives = 103/289 (35%), Gaps = 38/289 (13%)

Query: 4   LMGGISSEREVSLSSGKACASALEDAGF--------------------KVSQIDVDRS-V 42
           L  G + E + S         AL++AG                     +V  + V    V
Sbjct: 102 LAIGQAGEFDYS----SQALKALKEAGVQSVLINPNIATIQTDHALADEVYYLPVTPEYV 157

Query: 43  GLVLAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQ 98
             V+   KPD  F    G    +  VQ     + E   +    + +     S D+    +
Sbjct: 158 TYVIEKEKPDGIFLSFGGQTALNLGVQMQRLGLFEKYGVKVLGTSVKTLETSEDRDLFAR 217

Query: 99  VVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
            +    +P+  SI V      +D+   +  P +++       LG      ++ +    + 
Sbjct: 218 ALDEINIPIAKSIAVGTIEEALDAAEKVGYPIIVRAAYALGGLGSGFANNEEELR--NMA 275

Query: 157 SSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215
           + S     Q+L+E+ + G  E+   V+ DA+ +   I V   + +   L   + +S  V 
Sbjct: 276 ARSLTLSPQILVEKSLKGWKEVEYEVVRDANNN--CITVCNMENFD-PLGIHTGDSIVVA 332

Query: 216 PAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
           P++ +  + Y  ++  A    + +G  G     +   P       +E+N
Sbjct: 333 PSQTLSDEEYHMLRSAAIKIVRHLGVVGECNVQYALQPDGLDYRVIEVN 381



 Score = 56.7 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 21/171 (12%), Positives = 59/171 (34%), Gaps = 12/171 (7%)

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVI 130
           E        +       + D+ +  +++ S G+       +            +  P ++
Sbjct: 668 ETGGAKVLGTDPKDIDKAEDRQKFSEILDSIGIDQPAWKELTSVEEAETFADQVGYPVLV 727

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL----TCGVMGDAS 186
           +P    S   + VI   + +   L  +++ +    ++I ++++G +          G+  
Sbjct: 728 RPSYVLSGAAMTVIHSQEDLKEKLEAAANVSPDHPVVISKFIEGAQEIDVDGVASEGNLI 787

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           L      V ++  +S +       +  + PA +       V+ +A    +A
Sbjct: 788 LHAVSEHVEQAGVHSGDA------TLVLPPANLDQTTMDRVKDIAERVAKA 832


>gi|254282306|ref|ZP_04957274.1| methylcrotonyl-CoA carboxylase, alpha subunit [gamma
           proteobacterium NOR51-B]
 gi|219678509|gb|EED34858.1| methylcrotonyl-CoA carboxylase, alpha subunit [gamma
           proteobacterium NOR51-B]
          Length = 674

 Score = 69.4 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 44/248 (17%), Positives = 81/248 (32%), Gaps = 30/248 (12%)

Query: 31  FKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
           + V Q  +D ++      + P   F   +  F E            I +    + A    
Sbjct: 64  YLVYQKVIDAALKTGAQAIHPGYGFLSENPRFCE------ACRDNSIVFIGPPVAAIEAM 117

Query: 91  MDKMRSKQVVSSCGVPVCPSILVNRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKK 146
             K  +KQ++ + GVP+ P    N    D    +   I  P ++K + GG   G+  +  
Sbjct: 118 GSKSAAKQIMEAAGVPLVPGYHGNDQDRDVLKSAADDIGYPVLLKAVAGGGGKGMRQVWS 177

Query: 147 DQSIPLDLLQSSSWNH----GDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFY- 200
                  L  +          D +L+E+Y+     +   V  D            +  Y 
Sbjct: 178 SGEFDEALAAARREAMNGFGNDDMLVEKYLTQPRHVEIQVFFDGH---------DNGVYL 228

Query: 201 ---SYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256
                 ++          PA  +   +   +   A  A +AI   G    +FL D     
Sbjct: 229 FERDCSVQRRHQKVIEEAPAPGMTEALRAAMGEAALRAARAINYEGAGTVEFLLDN-DGS 287

Query: 257 VFWLEINV 264
            +++E+N 
Sbjct: 288 FYFMEMNT 295


>gi|218133233|ref|ZP_03462037.1| hypothetical protein BACPEC_01098 [Bacteroides pectinophilus ATCC
           43243]
 gi|217992106|gb|EEC58110.1| hypothetical protein BACPEC_01098 [Bacteroides pectinophilus ATCC
           43243]
          Length = 1066

 Score = 69.4 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 33/225 (14%), Positives = 84/225 (37%), Gaps = 13/225 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           L  + +P   +       + D+    +++    +P      V      + + + +  P +
Sbjct: 647 LMKMGVPILGTKAEDVDAAEDRELFDEILEKTQIPRAKGHTVYTVDEALKAANELGYPVL 706

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           ++P       G+ +   D  +   +   +       +L+++Y+ G E+    + D     
Sbjct: 707 VRPSYVLGGQGMQIAVSDTDVIEFMNIINRIKQDHPILVDKYLMGKEIEVDAVCDGD--- 763

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
            +I +P    +       S +S  V PAK +   I   ++       +A+  +G+    F
Sbjct: 764 -DILIPGIMEHIERAGIHSGDSISVYPAKSLSPKIIDMIEDYTGRLARALHVKGLINIQF 822

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    + +V+ +E+N +   T     P ++   G    +L   ++
Sbjct: 823 I--DYNDQVYVIEVNPRSSRT----VPYISKVTGIPIVKLATKVI 861



 Score = 64.8 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 47/286 (16%), Positives = 100/286 (34%), Gaps = 33/286 (11%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI-----------DV----------DRSVGLV 45
           G ++E + +   G     +L++ G +V  +           D+           +SV  +
Sbjct: 21  GQAAEFDYA---GTQACRSLKEEGIEVVLVNSNPATIMTDKDIADEVYIEPLTTKSVEQI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   KPD     L G  G +  ++      L+   +    +  L    + D++  K+ + 
Sbjct: 78  ILKEKPDSVLPTLGGQAGLNLAMELDEAGFLKEHNVRLIGTTALTIKKAEDRLMFKETME 137

Query: 102 SCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
               PV  S++V      +     I  P V++P       G  +    + +   L     
Sbjct: 138 KIHEPVAASLVVENVEDGVVFAEKIGYPVVLRPAYTLGGSGGGIAHCREELEEILENGLR 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   Q+L+E+ + G  E+   VM D++ +   I V   +       ++  +        
Sbjct: 198 LSRVGQVLVERCIAGWKEIEYEVMRDSNGN--CITVCNMENLDPVGVHTGDSIVVAPSQT 255

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +    Y+ ++  A      +   G     F   P S +   +E+N 
Sbjct: 256 LSDKEYQMLRTSALNIISELKITGGCNVQFALHPTSFEYCVIEVNP 301


>gi|15604843|ref|NP_219627.1| acetyl-CoA carboxylase biotin carboxylase subunit [Chlamydia
           trachomatis D/UW-3/CX]
 gi|3328523|gb|AAC67715.1| Biotin Carboxylase [Chlamydia trachomatis D/UW-3/CX]
 gi|297748253|gb|ADI50799.1| Biotin carboxylase [Chlamydia trachomatis D-EC]
 gi|297749133|gb|ADI51811.1| Biotin carboxylase [Chlamydia trachomatis D-LC]
          Length = 457

 Score = 69.4 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 83/220 (37%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---S 110
            +H  +G   E+    +I E   + +      + A   DK+ +KQ+      PV P    
Sbjct: 76  AVHPGYGFLSENANFASICESCGLTFIGPSAESIATMGDKVAAKQLAKKIKCPVIPGSEG 135

Query: 111 ILVNRFT-MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSWNHGDQ 165
           ++ +    +     I  P VIK + GG   GI ++++             ++ +  +   
Sbjct: 136 VVKDEVEGIRIAEKIGFPIVIKAVAGGGGRGIRIVREKDEFYRAFTAARAEAEAGFNNPD 195

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE++++    L   V+GD   +   +            K             +  ++ 
Sbjct: 196 VYIEKFIENPRHLEVQVIGDKHGNYVYLGERDCTVQRRRQK----LIEETPSPILTPEMR 251

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +V ++A    ++ G   +   +FL D   R  +++E+N 
Sbjct: 252 AKVGKVAVDLARSAGYFSVGTVEFLLDKEKR-FYFMEMNT 290


>gi|56964233|ref|YP_175964.1| acetyl-CoA carboxylase biotin carboxylase subunit [Bacillus clausii
           KSM-K16]
 gi|56910476|dbj|BAD65003.1| acetyl-CoA carboxylase [Bacillus clausii KSM-K16]
          Length = 452

 Score = 69.4 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 83/220 (37%), Gaps = 16/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     I     I +      A +    K  +++ +   GVP+ P    
Sbjct: 77  AIHPGYGFLAENADFAEICADCNITFIGPSPTAISRMGTKDVARETMEKAGVPIVPGSNG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
            +            I  P +IK   GG   GI V + ++ +   +     ++ +      
Sbjct: 137 IVETIEDAKQIARDIGYPVIIKATAGGGGKGIRVARNEKELESGIKVTQQEAETAFGNPG 196

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+Y++    +   V+ D   +V  +            K    + +   PA I  +  
Sbjct: 197 VYLEKYIEDFRHVEIQVLADNHGNVIHLGERDCSIQRRLQKLLEESPS---PA-ITEEKR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +E+ R A  A +A+   G    +F++D  +   +++E+N 
Sbjct: 253 QEMGRAAVEAARAVQYSGAGTVEFIYDHNTGDFYFMEMNT 292


>gi|331238878|ref|XP_003332093.1| pyruvate carboxylase [Puccinia graminis f. sp. tritici CRL
           75-36-700-3]
 gi|309311083|gb|EFP87674.1| pyruvate carboxylase [Puccinia graminis f. sp. tritici CRL
           75-36-700-3]
          Length = 1207

 Score = 69.4 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 39/216 (18%), Positives = 78/216 (36%), Gaps = 16/216 (7%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVN 114
           +G   E+ +    +E   + +            DK++++ +   CGVPV P     I   
Sbjct: 136 YGFLAENAVFAKKVEDAGLAFIGPQPEVIDGLGDKVKARTLAIQCGVPVVPGTEGAIASY 195

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS----IPLDLLQSSSWNHGDQLLIEQ 170
                       P +IK   GG   G+ V++  +         + ++ S      + IE+
Sbjct: 196 DLADAFIKEHGFPVIIKAAMGGGGRGMRVVRAAEDFKESFERAVSEAKSAFGDGTVFIER 255

Query: 171 YVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQ 228
           ++D    +   ++GD   +V              ++        + PA  +  ++   + 
Sbjct: 256 FLDKPRHIEVQLLGDNLGNVI-----HLFERDCSVQRRHQKVVELAPASNLSDEVRTRIL 310

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             A    QA+  R    ++FL D   R   ++EIN 
Sbjct: 311 EDAKKLAQAVKYRNAGTAEFLVDQQGRH-HFIEINP 345


>gi|166154345|ref|YP_001654463.1| acetyl-CoA carboxylase biotin carboxylase subunit [Chlamydia
           trachomatis 434/Bu]
 gi|166155220|ref|YP_001653475.1| acetyl-CoA carboxylase biotin carboxylase subunit [Chlamydia
           trachomatis L2b/UCH-1/proctitis]
 gi|301335597|ref|ZP_07223841.1| acetyl-CoA carboxylase biotin carboxylase subunit [Chlamydia
           trachomatis L2tet1]
 gi|165930333|emb|CAP03819.1| biotin carboxylase [Chlamydia trachomatis 434/Bu]
 gi|165931208|emb|CAP06773.1| biotin carboxylase [Chlamydia trachomatis L2b/UCH-1/proctitis]
          Length = 457

 Score = 69.4 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 83/220 (37%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---S 110
            +H  +G   E+    +I E   + +      + A   DK+ +KQ+      PV P    
Sbjct: 76  AVHPGYGFLSENANFASICESCGLTFIGPSAESIATMGDKVAAKQLAKKIKCPVIPGSEG 135

Query: 111 ILVNRFT-MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSWNHGDQ 165
           ++ +    +     I  P VIK + GG   GI ++++             ++ +  +   
Sbjct: 136 VVKDEVEGIRIAEKIGFPIVIKAVAGGGGRGIRIVREKDEFYRAFTAARAEAEAGFNNPD 195

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE++++    L   V+GD   +   +            K             +  ++ 
Sbjct: 196 VYIEKFIENPRHLEVQVIGDKHGNYVYLGERDCTVQRRRQK----LIEETPSPILTPEMQ 251

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +V ++A    ++ G   +   +FL D   R  +++E+N 
Sbjct: 252 AKVGKVAVDLARSAGYFSVGTVEFLLDKEKR-FYFMEMNT 290


>gi|325675376|ref|ZP_08155060.1| acetyl/propionyl-CoA carboxylase [Rhodococcus equi ATCC 33707]
 gi|325553347|gb|EGD23025.1| acetyl/propionyl-CoA carboxylase [Rhodococcus equi ATCC 33707]
          Length = 673

 Score = 69.4 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 43/214 (20%), Positives = 81/214 (37%), Gaps = 19/214 (8%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
           +G   E+      +E   + +    + +  L   K+ SK++++  GVPV     +     
Sbjct: 90  YGFLSENADFAQAVEAAGLTWIGPPVKSIELMGSKVESKRIMAEAGVPV-----LAELDP 144

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQLLIEQYVD- 173
            +      P ++K   GG   G+ V+++  ++P +L  +            +  E+Y++ 
Sbjct: 145 GAVTEADLPVLVKASAGGGGRGMRVVRELSALPRELEAARREAQSAFGDPTVFCERYLET 204

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI---YKEVQRL 230
           G  +   VM D    V  +   +        K          P+ +   I     ++   
Sbjct: 205 GRHIEVQVMADRHGTVWAVGERECSIQRRHQK-----VVEEAPSPLVERIPAMRAKLFEA 259

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           A LA  AIG  G    +FL D      F+LE+N 
Sbjct: 260 ARLAANAIGYEGAGTVEFLADEA-GDFFFLEMNT 292


>gi|311032895|ref|ZP_07710985.1| arginine specific carbamoyl-phosphate synthase large chain
           [Bacillus sp. m3-13]
          Length = 1074

 Score = 69.4 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 55/292 (18%), Positives = 113/292 (38%), Gaps = 45/292 (15%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI---------DVD------------RSVGLV 45
           G ++E + +   G     AL++ G +V  +         DVD             S+  +
Sbjct: 21  GQAAEFDYA---GTQACLALKEEGIEVVLVNNNPATIMTDVDIADHVYMEPLTVESLEKI 77

Query: 46  LAHLKPD---------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRS 96
           +   KPD          A N++    G+D     IL+   +    + + +     D+   
Sbjct: 78  IEKEKPDGIIGTLGGQTALNLIVELSGKD-----ILKKHNVSVLGTSVHSIQQGEDRELF 132

Query: 97  KQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154
           + ++     P+  S +V+  +  MD    I  P +++P       G      DQ + + L
Sbjct: 133 RTLMMELNEPIPESQIVHSIKEGMDFVKKIGYPIIVRPAYTLGGEGGGFAYNDQELHMLL 192

Query: 155 LQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTH 213
            +    +  +Q+L+E+ + G  E+   VM D +   T I V   + +     ++  +S  
Sbjct: 193 KKGLHLSPINQVLVEKSIKGWKEVEYEVMRDEND--TCIIVCNMENFDPVGVHT-GDSIV 249

Query: 214 VLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           V P++ +    Y+ ++  +    + +   G     F  DP S   + +E+N 
Sbjct: 250 VAPSQTLSDRQYQILRNASLKIIRNLKIVGGCNIQFAMDPNSDNYYIIEVNP 301



 Score = 61.7 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 46/271 (16%), Positives = 92/271 (33%), Gaps = 33/271 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           S  A   AL+ AGF+   ++ +                       +  ++   K DL F 
Sbjct: 577 SVHAV-KALKKAGFETIVVNNNPETVSTDFSVADKLYFEPITIEDIVPIIQKEKVDLIFI 635

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116
              G    +  +   L+        + I +     D+     ++ S G+P     +V + 
Sbjct: 636 QFGGQTAIN--LAEGLKEEGAIIAGTSIESIDKLEDRSHFYALLESEGIPHIEGKIVEQS 693

Query: 117 TM--DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
           +        +  P +++P        +  I  D  I   L           LL+++YV G
Sbjct: 694 SQLKAEAQALGYPVLVRPSYVIGGQSMYTIYDDGEINSFLDIHQHNESLWPLLVDRYVPG 753

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFL 233
           +E    V+ D      +I +P    +  +    S +S  VLP   +   + + +      
Sbjct: 754 LECELDVISDGE----QIYIPAIFEHIEKAGVHSGDSLAVLPSISLSTQMKERLVEYTKK 809

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
                   GI+   F+ +  +  ++ LE+N 
Sbjct: 810 ICNTAQIIGIANIQFVINRDN--IYVLEVNP 838


>gi|264678458|ref|YP_003278365.1| carbamoyl-phosphate synthase L chain [Comamonas testosteroni CNB-2]
 gi|262208971|gb|ACY33069.1| carbamoyl-phosphate synthase L chain [Comamonas testosteroni CNB-2]
          Length = 682

 Score = 69.4 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 76/220 (34%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+       E   I +      + A   DK+ SK++     V   P    
Sbjct: 77  AVHPGYGFLSENEGFARRCEEEGIAFIGPKSHSIAAMGDKIASKKLAGEAQVNTIPGYND 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
            I      ++    I  P +IK   GG   G+ V   D+           ++ +    D+
Sbjct: 137 AIAGPEQAVEIAKGIGYPVMIKASAGGGGKGLRVAFNDKEAFEGFASCQNEARNSFGDDR 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE++V +   +   ++GD+  +V  +   +        K             I  +  
Sbjct: 197 IFIEKFVQEPRHIEIQILGDSHGNVVYLNERECSIQRRHQK----VIEEAPSPFISDETR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K +   A    +A+  +     +F      +  ++LE+N 
Sbjct: 253 KAMGEQAVALAKAVKYQSAGTVEF-VVGKDQDFYFLEMNT 291


>gi|157738449|ref|YP_001491133.1| ATP-grasp domain-containing protein [Arcobacter butzleri RM4018]
 gi|157700303|gb|ABV68463.1| ATP-grasp (A) domain protein [Arcobacter butzleri RM4018]
          Length = 373

 Score = 69.4 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 22/174 (12%), Positives = 69/174 (39%), Gaps = 8/174 (4%)

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQ 148
           L+ +K+  K+ +    +P     +      + +   + P +IKP+      G+  +   +
Sbjct: 105 LTTNKLLMKETLVRSSIPTANYKI--ESVSNFKEPQNFPIIIKPIDSSGGRGLSFVNSKE 162

Query: 149 SIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS 208
            +   + + S ++  ++ L+E+Y+ G + +   +         IA+    F       + 
Sbjct: 163 ELNQAIKKISKYSKEEKFLVEEYIQGEQYSIETISCKGHHSI-IAITHEFF---REVPNI 218

Query: 209 LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLE 261
           +   H +PA +  ++ + + ++      +   + G    +      + +++ +E
Sbjct: 219 IEKKHYIPASLNTNLKERISKIVENILNSFKIKFGACHIELKIT-SNNEIYIIE 271


>gi|114650514|ref|XP_001148931.1| PREDICTED: propionyl-Coenzyme A carboxylase, alpha polypeptide
           isoform 8 [Pan troglodytes]
          Length = 730

 Score = 69.4 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 42/222 (18%), Positives = 77/222 (34%), Gaps = 19/222 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      L   ++ +      A     DK+ SK +     V   P    
Sbjct: 138 AVHPGYGFLSENKEFARCLAAEDVVFIGPDTHAIQAMGDKIESKLLAKKAEVNTIPGFDG 197

Query: 112 LVNRFTMDS--QHLISPPYVIKPLKGGSSLGIIVIKKDQS----IPLDLLQSSSWNHGDQ 165
           +V            I  P +IK   GG   G+ +   D+       L   +++S    D+
Sbjct: 198 VVKDAEEAVRIAREIGYPVMIKASAGGGGKGMRIAWDDEETRDGFRLSSQEAASSFGDDR 257

Query: 166 LLIEQYVDG---IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD 222
           LLIE+++D    IE+   V+GD   +   +   +        K             +  +
Sbjct: 258 LLIEKFIDNPRHIEIQVEVLGDKHGNALWLNERECSIQRRNQK----VVEEAPSIFLDAE 313

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             + +   A    +A+        +FL D      ++LE+N 
Sbjct: 314 TRRAMGEQAVALARAVKYSSAGTVEFLVDSKKN-FYFLEMNT 354


>gi|73541863|ref|YP_296383.1| carbamoyl phosphate synthase large subunit [Ralstonia eutropha
           JMP134]
 gi|72119276|gb|AAZ61539.1| carbamoyl-phosphate synthase large subunit [Ralstonia eutropha
           JMP134]
          Length = 1082

 Score = 69.4 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 27/198 (13%), Positives = 73/198 (36%), Gaps = 8/198 (4%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYV 129
           LE   +P   +       + D+ R ++++   G+   P+               I  P V
Sbjct: 658 LERNGVPIIGTSPDMIDAAEDRERFQKLLQDLGLRQPPNRTARAEDEALRLAEEIGYPLV 717

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++ + + +   + ++   ++   +L+++++ D IE     + D    
Sbjct: 718 VRPSYVLGGRAMEIVHEPRDLERYMREAVKVSNDSPVLLDRFLNDAIECDVDALSDGKRV 777

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                +   +       +S  ++  + P  +  +   E++R      +A+   G+    F
Sbjct: 778 FIGGVMEHIEQAGV---HSGDSACSLPPYSLSAETVAELKRQTAAMAKALNVVGLMNVQF 834

Query: 249 LFDPLSR--KVFWLEINV 264
                +    V+ LE+N 
Sbjct: 835 AIQQNNGVDTVYVLEVNP 852



 Score = 61.7 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 49/285 (17%), Positives = 95/285 (33%), Gaps = 42/285 (14%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + GFKV  +              DV          V  ++   +PD    
Sbjct: 29  SGAQACKALREEGFKVILVNSNPATIMTDPATADVTYIEPITWEVVERIIEKERPDAILP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G    +  +      +L+  ++    +   A   + D+ + K  ++  G+    S  
Sbjct: 89  TMGGQTALNCALDLHRHGVLDKYKVELIGASPEAIDKAEDRQKFKDAMTKIGLGSAKSGI 148

Query: 111 -------ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
                  + V             P VI+P       G  +    +       +    +  
Sbjct: 149 AHSMEEALAVQTRIAQDTGTSGYPIVIRPSFTLGGTGGGIAYNREEFEEICKRGLDLSPT 208

Query: 164 DQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPAK-IP 220
            +LLIE+ + G  E    V+ D + +   I   ++ D           +S  V PA+ + 
Sbjct: 209 RELLIEESLLGWKEYEMEVVRDKADNCIIICSIENLDPMGIHT----GDSITVAPAQTLT 264

Query: 221 LDIYKEVQRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
              Y+ ++  +    + IG   G S   F  +P   ++  +E+N 
Sbjct: 265 DKEYQILRNASLAVLREIGVDTGGSNVQFSINPKDGRMIVIEMNP 309


>gi|71001318|ref|XP_755340.1| carbamoyl-phosphate synthase, large subunit [Aspergillus fumigatus
           Af293]
 gi|66852978|gb|EAL93302.1| carbamoyl-phosphate synthase, large subunit [Aspergillus fumigatus
           Af293]
          Length = 1175

 Score = 69.4 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 58/291 (19%), Positives = 105/291 (36%), Gaps = 41/291 (14%)

Query: 6   GGIS----SEREVSLSSGKACASALEDAGF--------------------KVSQIDVDRS 41
           GG+S     E + S   G     AL++AG                     +V  + V   
Sbjct: 108 GGLSIGQAGEFDYS---GSQALKALKEAGVKSVLINPNIATIQTDHKLADEVYYLPVTPE 164

Query: 42  -VGLVLAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRS 96
            V  V+   +PD  F    G    +  VQ     I E   +    + I     S D+   
Sbjct: 165 YVTHVIERERPDGIFLSFGGQTALNLGVQMNRMGIFERYGVRVLGTSIRTLETSEDRDLF 224

Query: 97  KQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154
            Q +    +P+  SI VN     + +   +  P +++       LG    +  + +    
Sbjct: 225 AQALKEINIPIAESIAVNTVDEALKAAESVGYPIIVRSAYALGGLGSGFAENPEELK--N 282

Query: 155 LQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTH 213
           L S S     Q+L+E+ + G  E+   V+ DA+ +   I V   + +   L   + +S  
Sbjct: 283 LASRSLTLAPQILVEKSLKGWKEVEYEVVRDAANN--CITVCNMENFD-PLGIHTGDSIV 339

Query: 214 VLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
           V P++ +  + Y  ++  A    + +G  G     +   P       +E+N
Sbjct: 340 VAPSQTLSDEEYHMLRTAAIKIVRHLGVVGECNVQYALQPDGLDYRVIEVN 390



 Score = 53.2 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 26/176 (14%), Positives = 59/176 (33%), Gaps = 12/176 (6%)

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--QHLISPPYVI 130
           E        +       + D+ +  Q++ S GV       +            +  P ++
Sbjct: 738 ETGGAHVLGTDPQDIDKAEDRHKFSQILDSIGVDQPAWKELTSVAEAERFAESVGYPVLV 797

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL----TCGVMGDAS 186
           +P    S   + VI     +   LL +S+ +    ++I ++++G +          G   
Sbjct: 798 RPSYVLSGAAMSVIYSGDELKEKLLNASAVSPDHPVVITKFIEGAQEIDIDAVASNGKLL 857

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
           L      V  +  +S +       +  + PA +   +   V+ +A    +A    G
Sbjct: 858 LHAVSEHVEPAGVHSGDA------TLVLPPASLDEKVMGRVKEIAEKVAKAWNITG 907


>gi|53718746|ref|YP_107732.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia
           pseudomallei K96243]
 gi|126452032|ref|YP_001065475.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia
           pseudomallei 1106a]
 gi|167737742|ref|ZP_02410516.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia
           pseudomallei 14]
 gi|167814900|ref|ZP_02446580.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia
           pseudomallei 91]
 gi|167823345|ref|ZP_02454816.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia
           pseudomallei 9]
 gi|167893433|ref|ZP_02480835.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia
           pseudomallei 7894]
 gi|167910125|ref|ZP_02497216.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia
           pseudomallei 112]
 gi|167918155|ref|ZP_02505246.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia
           pseudomallei BCC215]
 gi|226195393|ref|ZP_03790982.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia
           pseudomallei Pakistan 9]
 gi|237811485|ref|YP_002895936.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia
           pseudomallei MSHR346]
 gi|242316624|ref|ZP_04815640.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia
           pseudomallei 1106b]
 gi|254181277|ref|ZP_04887874.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia
           pseudomallei 1655]
 gi|254195114|ref|ZP_04901543.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia
           pseudomallei S13]
 gi|254261804|ref|ZP_04952858.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia
           pseudomallei 1710a]
 gi|81824802|sp|Q63VY4|PURT_BURPS RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|171855120|sp|A3NT04|PURT_BURP0 RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|172046642|sp|Q3JUJ4|PURT_BURP1 RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|52209160|emb|CAH35104.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia
           pseudomallei K96243]
 gi|126225674|gb|ABN89214.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia
           pseudomallei 1106a]
 gi|169651862|gb|EDS84555.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia
           pseudomallei S13]
 gi|184211815|gb|EDU08858.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia
           pseudomallei 1655]
 gi|225932595|gb|EEH28593.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia
           pseudomallei Pakistan 9]
 gi|237506528|gb|ACQ98846.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia
           pseudomallei MSHR346]
 gi|242139863|gb|EES26265.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia
           pseudomallei 1106b]
 gi|254220493|gb|EET09877.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia
           pseudomallei 1710a]
          Length = 404

 Score = 69.4 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 48/277 (17%), Positives = 92/277 (33%), Gaps = 38/277 (13%)

Query: 19  GKACASALEDAGFKVSQID----------------VDRSVGLVLAHL----KPDLAFNVL 58
           GK    AL+  G +V  +D                +D +    L  L    +P L    +
Sbjct: 27  GKEVIIALQRLGVEVIAVDRYPNAPGHQVAHRAHVIDMTDPDALRALVDAERPHLVVPEI 86

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKM-RSKQVVSSCGVPVCPSILVNRFT 117
                 D L  A +E   +        A+ L+M++    +      G+P  P      F 
Sbjct: 87  EAI-ATDAL--AAIEAAGVCEVIPTARATQLTMNREGIRRLAAEELGLPTSPYAFAQSFD 143

Query: 118 MDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH--GDQLLIEQYV- 172
             +  +  I  P V+KP+   S  G  V++ +  I      + +       ++++E ++ 
Sbjct: 144 EFAAAVARIGFPCVVKPVMSSSGKGQSVVRSEADIEPAWRYAMAGGRVNHGRVIVEGFIR 203

Query: 173 ---DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
              +  +LT   +  AS                   Y         P  +     +  + 
Sbjct: 204 FDYEITQLTVRAIDPASGQTRTSFCAPIGHLQVAGDY----VESWQPQPMSAKALERSRD 259

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
           +A     A+G RGI   +         V++ E++ +P
Sbjct: 260 IAHRVTSALGGRGIFGVELFVR--GDDVWFSEVSPRP 294


>gi|225163608|ref|ZP_03725915.1| carbamoyl-phosphate synthase, large subunit [Opitutaceae bacterium
           TAV2]
 gi|224801776|gb|EEG20065.1| carbamoyl-phosphate synthase, large subunit [Opitutaceae bacterium
           TAV2]
          Length = 1133

 Score = 69.4 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 51/279 (18%), Positives = 96/279 (34%), Gaps = 36/279 (12%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +              DV          +  ++   KP     
Sbjct: 29  SGTQACKALREEGYRVILVNSNPATIMTDPEFADVTYIEPLTVEMLEKIIETEKPSALLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G    +  +Q     IL+   +    +   A A   D+   KQ +   G+ V  S  
Sbjct: 89  TLGGQTALNLSMQLHEKGILQKHGVEMIGAKPAAIAKGEDRELFKQAMLKIGLDVARSRT 148

Query: 113 VNRFT---MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
           V         ++ + + P +I+P       G  +    +     +      +   ++L+E
Sbjct: 149 VKSMDAARAAAEEIGNYPLIIRPSFTLGGSGGGIAYNKEEFEQIVANGLDLSPVHEVLVE 208

Query: 170 QYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKE 226
           + + G  E    VM D       I   ++    ++       +S  V PA  +    Y+ 
Sbjct: 209 ECLLGWKEYEMEVMRDHKDQCVVICSIEN----FDPMGVHTGDSITVAPAMTLTDKEYQV 264

Query: 227 VQRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           ++  +F   + IG   G S   F  DP + +   +E+N 
Sbjct: 265 MRDASFAVIREIGVETGGSNIQFSIDPKTGRQVVIEMNP 303



 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 29/229 (12%), Positives = 81/229 (35%), Gaps = 14/229 (6%)

Query: 68  VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLIS 125
           + + L+   +    +   +  ++ D+     ++    +    +      T        + 
Sbjct: 706 LASALKANGVNIIGTSPESIEIAEDRKLFAAILHKLNLQQPANRTAMNETEALVFAKEVG 765

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGD 184
            P +++P       G+ ++  +      + Q+        +LI++++ D IEL    + D
Sbjct: 766 FPVLLRPSFVLGGRGMFIVYNEDEFKAVIRQAFEVMPDKPVLIDKFLEDAIELDVDCISD 825

Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGI 243
            +  V    +   +F          +++ V+P   +   + + V++      + +   G+
Sbjct: 826 GTTSVIGGMLEHIEFAGVHS----GDASMVMPPHTLGRAMLETVRKATHALARELNVIGL 881

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
               F       +++ LE+N +   T     P +A   G    +L   +
Sbjct: 882 MNIQFAI--KDNELYVLEVNPRASRT----VPFVAKAIGVPLAKLAAKI 924


>gi|197334799|ref|YP_002157180.1| acetyl-CoA carboxylase, biotin carboxylase [Vibrio fischeri MJ11]
 gi|197316289|gb|ACH65736.1| acetyl-CoA carboxylase, biotin carboxylase [Vibrio fischeri MJ11]
          Length = 447

 Score = 69.4 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 35/222 (15%), Positives = 81/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         +  DK+ +   +   GVP  P    
Sbjct: 77  AVHPGYGFLSENADFAEQVERSGFIFVGPKAETIRMMGDKVSAITAMKKAGVPCVPGSDG 136

Query: 112 LVNRFTMDS---QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
            ++     +      I  P +IK   GG   G+ V++ ++ +   +     ++ +  + +
Sbjct: 137 PLDNDEAKNKTHAKRIGYPVIIKASGGGGGRGMRVVRAEKDLVEAIAMTRAEAKACFNNE 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E++++    +   V+ D   +   +            K          PA  I  +
Sbjct: 197 MVYMEKFLENPRHIEVQVLADGQGNAIHLGERDCSMQRRHQK-----VVEEAPAPGITEE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + K +      A   IG RG    +FL+   + + +++E+N 
Sbjct: 252 MRKYIGERCTRACLEIGYRGAGTFEFLY--ENGEFYFIEMNT 291


>gi|73542169|ref|YP_296689.1| putative carbamoyl phosphate synthase large subunit [Ralstonia
           eutropha JMP134]
 gi|72119582|gb|AAZ61845.1| conserved hypothetical protein [Ralstonia eutropha JMP134]
          Length = 354

 Score = 69.4 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 35/208 (16%), Positives = 71/208 (34%), Gaps = 26/208 (12%)

Query: 69  QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH--LISP 126
           Q + E+  +P   S      L  DK  + Q   S G+    S    +   ++     +S 
Sbjct: 89  QRLREIGTVPIV-SSPEVVHLCADKFVTSQFAESIGIATPRSYATLQSAEEALDTGEVSF 147

Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLD------LLQSSSWNHGDQ----LLIEQYVDGIE 176
           P V+KP  G +S GI  ++    +         + + S +    +    +L+++ + G E
Sbjct: 148 PLVVKPRWGSASFGIFFVENRDELRFAHAYCARIWKQSKFTRMGEADALVLVQEMIVGQE 207

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
               +  D          P       +L   +  +   +  +           +A    +
Sbjct: 208 YGLDIFND------LEGQPLGLAARLKLSMRAGETDRAITVENGP-----FSDMAARISR 256

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINV 264
           A+  R I   D        +++ LE+N 
Sbjct: 257 AL--RHIGNVDCDVIERDGRLYLLEMNP 282


>gi|325925176|ref|ZP_08186589.1| carbamoyl-phosphate synthase large subunit [Xanthomonas perforans
           91-118]
 gi|325544430|gb|EGD15800.1| carbamoyl-phosphate synthase large subunit [Xanthomonas perforans
           91-118]
          Length = 1080

 Score = 69.4 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 48/278 (17%), Positives = 100/278 (35%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL D G++V  +         D +            ++V  ++A  KPD    
Sbjct: 29  SGAQACKALRDEGYRVVLVNSNPATIMTDPNMADAVYIEPINWQTVEKIIAKEKPDALLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV--PVCPS 110
            + G    +  +      +LE   +    +   A  ++ D+   +  +   G+  P    
Sbjct: 89  TMGGQTALNCALDLADHGVLEKYNVELIGAKREAIRMAEDRELFRVAMGEIGLDCPTAAV 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  ++ Q  +  P +I+P       G  +    + +   + +    +   ++L+E+
Sbjct: 149 AHTLEEALEIQTRVGYPTIIRPSFTLGGSGGGIAYNREELIEIVGRGLELSPTTEVLVEE 208

Query: 171 YVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            V G  E    V+ D + + +   A+   D           +S  V PA+ +    Y+ +
Sbjct: 209 SVLGWKEFEMEVVRDTADNCIIVCAIENLDPMGVHT----GDSITVAPAQTLTDKEYQRL 264

Query: 228 QRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F   P + +V  +E+N 
Sbjct: 265 RDASIAVLRKIGVDTGGSNVQFGISPTTGRVVVIEMNP 302



 Score = 64.4 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/223 (15%), Positives = 87/223 (39%), Gaps = 12/223 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           LE   +P   +   +  L+ D+ R +Q+V   G+   P+ +       +     I  P V
Sbjct: 654 LEANGVPVIGTSPDSIDLAEDRERFQQLVDKLGLKQPPNRIARNAEEALVLAREIGYPLV 713

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLD 188
           ++P        + ++  +  +   +  +   ++   +L+++++D  +E+   ++ D   +
Sbjct: 714 VRPSYVLGGRAMEIVYGESDLARYVRDAVKVSNDSPVLLDRFLDNAVEVDVDIIADKDGN 773

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           V    V   +       +S  +S  + P  +      E++R   +  + +   G+  + F
Sbjct: 774 VLIGGV--MEHIEEAGVHSGDSSCSLPPYSLSPQTQAELRRQVVMLAEGLNVVGLMNTQF 831

Query: 249 LF---DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
                +     V+ LE+N +   T     P ++   G    ++
Sbjct: 832 AVQVNEAGDDIVYLLEVNPRASRT----VPFVSKAIGMPLAKI 870


>gi|21231291|ref|NP_637208.1| carbamoyl phosphate synthase large subunit [Xanthomonas campestris
           pv. campestris str. ATCC 33913]
 gi|66768657|ref|YP_243419.1| carbamoyl phosphate synthase large subunit [Xanthomonas campestris
           pv. campestris str. 8004]
 gi|188991525|ref|YP_001903535.1| carbamoyl phosphate synthase large subunit [Xanthomonas campestris
           pv. campestris str. B100]
 gi|22095492|sp|P58943|CARB_XANCP RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|21112944|gb|AAM41132.1| carbamoyl-phosphate synthase large chain [Xanthomonas campestris
           pv. campestris str. ATCC 33913]
 gi|66573989|gb|AAY49399.1| carbamoyl-phosphate synthase large chain [Xanthomonas campestris
           pv. campestris str. 8004]
 gi|167733285|emb|CAP51484.1| Carbamoyl-phosphate synthase large chain [Xanthomonas campestris
           pv. campestris]
          Length = 1080

 Score = 69.4 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 48/278 (17%), Positives = 102/278 (36%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL D G++V  +         D +            ++V  ++A  KPD    
Sbjct: 29  SGAQACKALRDEGYRVVLVNSNPATIMTDPNMADAVYIEPINWQTVEKIIAKEKPDALLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      +LE   +    +   A  ++ D+   +  +   G+    + +
Sbjct: 89  TMGGQTALNCALDLADHGVLEKYNVELIGAKREAIRMAEDRELFRVAMGEIGLDCPRAEV 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     +D Q  +  P +I+P       G  +    + +   + +    +   ++L+E+
Sbjct: 149 AHTLEEALDIQTRVGYPTIIRPSFTLGGSGGGIAYNREELIDIVGRGLELSPTTEVLVEE 208

Query: 171 YVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            V G  E    V+ D + + +   A+   D           +S  V PA+ +    Y+ +
Sbjct: 209 SVLGWKEFEMEVVRDTADNCIIVCAIENLDPMGVHT----GDSITVAPAQTLTDKEYQRL 264

Query: 228 QRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F   P + +V  +E+N 
Sbjct: 265 RDASIAVLRKIGVDTGGSNVQFGISPTTGRVVVIEMNP 302



 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 35/223 (15%), Positives = 87/223 (39%), Gaps = 12/223 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYV 129
           LE   +P   +   +  L+ D+ R +Q+V   G+   P+ +             I  P V
Sbjct: 654 LEANGVPVIGTSPDSIDLAEDRERFQQLVDKLGLKQPPNRIARNADEALVLAREIGYPLV 713

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLD 188
           ++P        + ++  +  +   +  +   ++   +L+++++D  +E+   ++ D   +
Sbjct: 714 VRPSYVLGGRAMEIVYGESDLARYVRDAVKVSNDSPVLLDRFLDNAVEVDVDIIADKDGN 773

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           V    V   +       +S  +S  + P  +  +   E++R   +  + +   G+  + F
Sbjct: 774 VLIGGV--MEHIEEAGVHSGDSSCSLPPYSLSAETQAELRRQVVMLAEGLNVVGLMNTQF 831

Query: 249 LF---DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
                D     V+ LE+N +   T     P ++   G    ++
Sbjct: 832 AVQVNDAGDDIVYLLEVNPRASRT----VPFVSKATGMPLAKI 870


>gi|331014698|gb|EGH94754.1| acetyl-CoA carboxylase biotin carboxylase subunit [Pseudomonas
           syringae pv. lachrymans str. M302278PT]
          Length = 336

 Score = 69.4 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 76/222 (34%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         L  DK+ +K  +    VP  P    
Sbjct: 77  AIHPGYGFLAENADFAEQVEKSGFAFIGPKADTIRLMGDKVSAKDAMKLANVPTVPGSDG 136

Query: 112 LVNRFTMDSQHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPL----DLLQSSSWNHGD 164
            +      +  +   +  P +IK   GG   G+ V+ +++ +         ++++W    
Sbjct: 137 PLPEDEAIALRIGREVGYPVIIKAAGGGGGRGMRVVHREEDLIEAAAQTRAEAAAWFSNP 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+Y+     +   V+ D                   L+          PA  I   
Sbjct: 197 MVYLEKYLTNPRHVEVQVISDGQGQAI-----HLGDRDCSLQRRHQKVLEEAPAPFIDEQ 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              +V      A   IG RG    +FL+   + + +++E+N 
Sbjct: 252 ARADVLAACVKACIDIGYRGAGTFEFLY--ENGRFYFIEMNT 291


>gi|330862509|emb|CBX72666.1| hypothetical protein YEW_AY05340 [Yersinia enterocolitica W22703]
          Length = 65

 Score = 69.4 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 24/44 (54%)

Query: 1  MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL 44
          + V+ GG S+E EVSL S K    A++   F V+ + +D+    
Sbjct: 6  VGVIFGGKSAEHEVSLQSAKNIVDAIDKEKFDVTLLGIDKQGKW 49


>gi|294624590|ref|ZP_06703265.1| carbamoyl-phosphate synthase large subunit [Xanthomonas fuscans
           subsp. aurantifolii str. ICPB 11122]
 gi|292601125|gb|EFF45187.1| carbamoyl-phosphate synthase large subunit [Xanthomonas fuscans
           subsp. aurantifolii str. ICPB 11122]
          Length = 1080

 Score = 69.4 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 48/278 (17%), Positives = 100/278 (35%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL D G++V  +         D +            ++V  ++A  KPD    
Sbjct: 29  SGAQACKALRDEGYRVVLVNSNPATIMTDPNMADAVYIEPINWQTVEKIIAKEKPDALLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV--PVCPS 110
            + G    +  +      +LE   +    +   A  ++ D+   +  +   G+  P    
Sbjct: 89  TMGGQTALNCALDLADHGVLEKYNVELIGAKREAIRMAEDRELFRVAMGEIGLDCPTAAV 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  ++ Q  +  P +I+P       G  +    + +   + +    +   ++L+E+
Sbjct: 149 AHTLEEALEIQTRVGYPTIIRPSFTLGGSGGGIAYNREELIEIVGRGLELSPTTEVLVEE 208

Query: 171 YVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            V G  E    V+ D + + +   A+   D           +S  V PA+ +    Y+ +
Sbjct: 209 SVLGWKEFEMEVVRDTADNCIIVCAIENLDPMGVHT----GDSITVAPAQTLTDKEYQRL 264

Query: 228 QRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F   P + +V  +E+N 
Sbjct: 265 RDASIAVLRKIGVDTGGSNVQFGISPTTGRVVVIEMNP 302



 Score = 64.4 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/223 (15%), Positives = 87/223 (39%), Gaps = 12/223 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           LE   +P   +   +  L+ D+ R +Q+V   G+   P+ +       +     I  P V
Sbjct: 654 LEANGVPVIGTSPDSIDLAEDRERFQQLVDKLGLKQPPNRIARNAEEALVLAREIGYPLV 713

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLD 188
           ++P        + ++  +  +   +  +   ++   +L+++++D  +E+   ++ D   +
Sbjct: 714 VRPSYVLGGRAMEIVYGESDLARYVRDAVKVSNDSPVLLDRFLDNAVEVDVDIIADKDGN 773

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           V    V   +       +S  +S  + P  +      E++R   +  + +   G+  + F
Sbjct: 774 VLIGGV--MEHIEEAGVHSGDSSCSLPPYSLSPQTQAELRRQVVMLAEGLNVVGLMNTQF 831

Query: 249 LF---DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
                +     V+ LE+N +   T     P ++   G    ++
Sbjct: 832 AVQVNEAGDDIVYLLEVNPRASRT----VPFVSKAIGMPLAKI 870


>gi|291514377|emb|CBK63587.1| Glutathione synthase/Ribosomal protein S6 modification enzyme
           (glutaminyl transferase) [Alistipes shahii WAL 8301]
          Length = 491

 Score = 69.4 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 32/195 (16%), Positives = 71/195 (36%), Gaps = 20/195 (10%)

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM----DSQHLISPPYVIKPLKGGSS 138
              +     +K+   ++     +P   S L+ R       +    +  P+++K   G  S
Sbjct: 273 DPESIIRCTNKVYLCELFEKARIPAPASQLLFRSNEYSFGEISERLGAPFILKIPDGSFS 332

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKS 197
           +G+  +  D+ +   L +   + H   LL ++++    +   G++    L   +  + K 
Sbjct: 333 VGMHKVASDEELRAALDEM--FRHSSVLLAQEFIPTEFDWRIGLLDGEPLFACKYYMAKG 390

Query: 198 DFYSYELKYS------SLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
            +  Y   +             V   K P    ++V   A  A  A+  +G+   D    
Sbjct: 391 HWQIYNHAHDDTGRNLCGAWETVPIYKAP----QKVLDTAVKA-AALIGKGLYGVDLKL- 444

Query: 252 PLSRKVFWLEINVQP 266
            ++ +   +EIN  P
Sbjct: 445 -INGRAVVIEINDNP 458


>gi|118475185|ref|YP_891851.1| acetyl-CoA carboxylase subunit A [Campylobacter fetus subsp. fetus
           82-40]
 gi|118414411|gb|ABK82831.1| biotin carboxylase [Campylobacter fetus subsp. fetus 82-40]
          Length = 481

 Score = 69.4 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 39/222 (17%), Positives = 88/222 (39%), Gaps = 20/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H  +G   E+      +E   + +            +K  ++ ++   G+PV P    
Sbjct: 76  AIHPGYGFLSENYEFSKEVEDAGLIFIGPNSDIIRKMGNKNIARFLMKKNGIPVVPGTEK 135

Query: 113 VNRFTMDSQH----LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGD 164
           +N  T+++       I  P ++K   GG   GI V+ K+  +         ++ ++ + D
Sbjct: 136 LNSETIEAIKNYAVRIVYPVILKASGGGGGRGIRVVWKEDELESSYESCKREAKAFFNND 195

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
           ++ +E+Y++    +   ++GD   ++  +            K        + P   I  D
Sbjct: 196 EVFMEKYIEKPRHIEFQILGDNYGNLIHLCERDCSIQRRHQK-----VIEIAPCPTISED 250

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + K +   A  A +A+G       +FL D  +   +++E+N 
Sbjct: 251 LRKRMGVAAVAAAKAVGYTNAGTIEFLLDDYNN-FYFMEMNT 291


>gi|332527676|ref|ZP_08403721.1| pyruvate carboxylase [Rubrivivax benzoatilyticus JA2]
 gi|332112078|gb|EGJ12054.1| pyruvate carboxylase [Rubrivivax benzoatilyticus JA2]
          Length = 1162

 Score = 69.4 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 30/200 (15%), Positives = 73/200 (36%), Gaps = 15/200 (7%)

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVI 130
             + +         +  +K+ ++    + GVPV P+       +D        I  P ++
Sbjct: 103 AGLQWIGPSPEVMRVLGNKVAARHAAVAAGVPVMPATPPLPREVDECRRLAEEIGFPVML 162

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQLLIEQYV-DGIELTCGVMGDA 185
           K   GG   G+ V++    +P  L     ++ +    D++  E+ +     +   ++GD 
Sbjct: 163 KASWGGGGRGMRVVESAAELPAALESARREALAAFGNDEVYFEKLIRRARHVEVQILGDR 222

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGIS 244
             ++              ++  +       PA  +      E+   A    +++G     
Sbjct: 223 HGNLV-----HLHERDCTVQRRNQKVVERAPAPYLDAAARAELCDSALRLMRSVGYTHAG 277

Query: 245 RSDFLFDPLSRKVFWLEINV 264
             +FL D  + + +++E+N 
Sbjct: 278 TVEFLMDADTGRCWFIEVNP 297


>gi|312170832|emb|CBX79092.1| acetyl-CoA carboxylase biotin carboxylase subunit [Erwinia
           amylovora ATCC BAA-2158]
          Length = 449

 Score = 69.4 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 79/222 (35%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+      +E     +         L  DK+ +   +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAEQVERSGFIFIGPKADTIRLMGDKVSAITAMKKAGVPTVPGSDG 136

Query: 111 --ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
                          I  P +IK   GG   G+ V++ ++ +   +     ++ +  + D
Sbjct: 137 PLTEDMDKNRAFAKRIGYPVIIKASGGGGGRGMRVVRSEKDLEQSINMTKAEAKAAFNND 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+Y++    +   V+ D   +   +A           K          PA  I  +
Sbjct: 197 MVYMEKYLENPRHIEIQVLADGQGNAIYLAERDCSMQRRHQK-----VVEEAPAPGITEE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + + +      A   IG RG    +FL+   + + +++E+N 
Sbjct: 252 MRRYIGDRCSKACIDIGYRGAGTFEFLY--ENGEFYFIEMNT 291


>gi|264677857|ref|YP_003277763.1| carbamoyl-phosphate synthase L chain [Comamonas testosteroni CNB-2]
 gi|262208369|gb|ACY32467.1| carbamoyl-phosphate synthase L chain [Comamonas testosteroni CNB-2]
          Length = 657

 Score = 69.4 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 38/215 (17%), Positives = 80/215 (37%), Gaps = 15/215 (6%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI----LVN 114
           +G   ED      ++   + +      A      K  +KQ+  + GVP  P        +
Sbjct: 81  YGFLSEDAGFAQTVQEAGLIWIGPPPAAIRQLGSKAAAKQLAKAHGVPCLPGYEGDDQCD 140

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGDQLLIEQ 170
               D   +I  P ++K + GG   G+ +++  + +   L     ++ +      LL+E+
Sbjct: 141 ARFADEAAMIGYPVMVKAVAGGGGRGMRLVESAKQLHAALNSARSEALAGFGNGDLLVER 200

Query: 171 YV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
            V     +   V  D    V  +        S + ++  +      PA +  ++ +++  
Sbjct: 201 AVMHPRHVEVQVFADGHGHVIHLGERD---CSVQRRHQKIIEEAPSPA-VNAELREQMGS 256

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            A    +A G  G    +FL     R+ + +E+N 
Sbjct: 257 CAVALAKAAGYVGAGTVEFLV--EGRQFYLMEMNT 289


>gi|229581463|ref|YP_002839862.1| lysine biosynthesis enzyme LysX [Sulfolobus islandicus Y.N.15.51]
 gi|228012179|gb|ACP47940.1| lysine biosynthesis enzyme LysX [Sulfolobus islandicus Y.N.15.51]
          Length = 283

 Score = 69.4 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 53/254 (20%), Positives = 104/254 (40%), Gaps = 33/254 (12%)

Query: 27  EDAGFKVSQIDV-DRSVGLVLAHLKPDL-AF---NVLHGNFGEDGLVQAIL-ELLEIPYT 80
           +  G++V+ I   D  +     +++ D+  F   N+ H       L+ + L E L  P  
Sbjct: 22  KKLGYQVTTIYSKDFVLFSNEFNIENDVNLFIQRNISHNR----ALITSFLVEQLGYPVI 77

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGSS 138
            +  +      +K+ +  +++   +P   + +    T  M+    +  P VIKP++G  S
Sbjct: 78  -NDHMTLIRCENKIFTTYILAKHNIPTPKTFIAFDKTNAMEYSKKLGYPVVIKPVEG--S 134

Query: 139 LGIIVIKKDQSIP----LDLLQSSSWNHGDQLLIEQYV--DGIELTCGVMGDASLDVTEI 192
            G +V K D        L+  + S+  + D   I+++V     ++   V+GD +  V   
Sbjct: 135 WGRMVAKADNLDILYSYLEYQEFSTQKYKDIYYIQEFVNKPNRDIRIFVIGDET-PVGIY 193

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            V ++         +   +T +     PL I +E++ LA      IG   +   D +F+ 
Sbjct: 194 RVNEN---------NWRTNTALGAKAYPLKIDEELKELALKVKDIIGGFFLG-ID-IFED 242

Query: 253 LSRKVFWLEINVQP 266
             R     E+N  P
Sbjct: 243 KDRGYLVDEVNGVP 256


>gi|118591125|ref|ZP_01548524.1| propionyl-CoA carboxylase alpha chain precursor [Stappia aggregata
           IAM 12614]
 gi|118436201|gb|EAV42843.1| propionyl-CoA carboxylase alpha chain precursor [Stappia aggregata
           IAM 12614]
          Length = 670

 Score = 69.4 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 73/220 (33%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H  +G   E       L    I +      A     DK+ SK+  +   V   P  L 
Sbjct: 77  AVHPGYGFLSERASFPEALAKEGIVWIGPNPRAIMAMGDKIESKKFANEAKVSTVPGYLG 136

Query: 113 ---VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
                   ++    I  P +IK   GG   G+ +      +    +    +++S    D+
Sbjct: 137 VIESPEQAVEIAQDIGYPVMIKASAGGGGKGMRIAWNADEVRDGYIRSKSEAASSFGDDR 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE++++    +   V+GD   +   +   +        K             +  +  
Sbjct: 197 VFIEKFIENPRHIEIQVLGDKHGNAIYLGERECSIQRRNQK----VIEEAPSPLLDEETR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +++   A    +A+        +F      +  F+LE+N 
Sbjct: 253 RKMGEQAVALAKAVDYDSAGTVEF-VAGQDKSFFFLEMNT 291


>gi|24940582|dbj|BAC23138.1| pyruvate carboxylase [Pagrus major]
          Length = 1179

 Score = 69.4 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 32/220 (14%), Positives = 75/220 (34%), Gaps = 19/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E           ++ +            DK+ ++ +  S GVPV P    
Sbjct: 113 AIHPGYGFLSERSDFAQACADADVMFIGPSPETVRKMGDKVEARSIAISAGVPVVPGTDA 172

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL----DLLQSSSWNHGDQ 165
            I               P + K   GG   G+ V+++ + +         ++ +      
Sbjct: 173 PIASLHEAQAFAQTYGFPIIFKAAYGGGGRGMRVVREYEELEENYQRAYSEALAAFGNGA 232

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDI 223
           L +E++++    +   ++GD   +V  +            K        + PA ++   +
Sbjct: 233 LFVEKFIEKPRHIEVQILGDKYGNVIHLYERDCSIQRRHQK-----VVEIAPAFQLDPHL 287

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
              +   +    + +G       +FL D   +  +++E+N
Sbjct: 288 RDRLHADSVNLAKQVGYENAGTVEFLVDKHGKH-YFIEVN 326


>gi|85119461|ref|XP_965636.1| pyruvate carboxylase [Neurospora crassa OR74A]
 gi|28927448|gb|EAA36400.1| pyruvate carboxylase [Neurospora crassa OR74A]
          Length = 1184

 Score = 69.4 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 88/221 (39%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
           ++H  +G   E+      +E   + +            DK+ ++++  + GVPV P    
Sbjct: 124 MIHPGYGFLSENADFARKVEKAGLIFIGPSPEVIDALGDKVSARKLAIAAGVPVVPGTEG 183

Query: 112 LVNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGDQ 165
            V+ F    D       P +IK   GG   G+ V++++ S+         ++ S      
Sbjct: 184 AVDTFEAVKDFTDKYGFPIIIKAAYGGGGRGMRVVREEASLRESFERATSEAKSAFGNGT 243

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDI 223
           + +E+++D    +   ++GD   ++  +           ++        + PA  +P + 
Sbjct: 244 VFVERFLDKPKHIEVQLLGDNHGNIVHLYE-----RDCSVQRRHQKVVEIAPAKDLPTET 298

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              +   A    +++  R    ++FL D  +R  +++EIN 
Sbjct: 299 RDAILADAVKLAKSVNYRNAGTAEFLVDQQNR-YYFIEINP 338


>gi|206579070|ref|YP_002240498.1| carbamoyl-phosphate synthase, large subunit [Klebsiella pneumoniae
           342]
 gi|288937198|ref|YP_003441257.1| carbamoyl-phosphate synthase, large subunit [Klebsiella variicola
           At-22]
 gi|290512619|ref|ZP_06551985.1| carbamoyl-phosphate synthase, large subunit [Klebsiella sp. 1_1_55]
 gi|206568128|gb|ACI09904.1| carbamoyl-phosphate synthase, large subunit [Klebsiella pneumoniae
           342]
 gi|288891907|gb|ADC60225.1| carbamoyl-phosphate synthase, large subunit [Klebsiella variicola
           At-22]
 gi|289774960|gb|EFD82962.1| carbamoyl-phosphate synthase, large subunit [Klebsiella sp. 1_1_55]
          Length = 1074

 Score = 69.4 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 42/278 (15%), Positives = 96/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D +              V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +    Q +L    +    +   A   + D+ R    +   G+    S +
Sbjct: 89  TMGGQTALNCALELERQGVLAEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLDTARSGI 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     +     +  P +I+P       G  +    +       +    +  ++LLI++
Sbjct: 149 AHTMEEALAVAADVGFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTNELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + +   +   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIEN----FDAMGIHTGDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P   ++  +E+N 
Sbjct: 265 RNASMAVLREIGVETGGSNVQFSVNPKDGRLIVIEMNP 302



 Score = 62.4 bits (151), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 74/197 (37%), Gaps = 10/197 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           LE   +P   +   A   + D+ R +  V    +    +  V      ++    I  P V
Sbjct: 654 LEAAGVPVIGTSPDAIDRAEDRERFQHAVDRLKLKQPANATVTAIEQAVERAKEIGYPLV 713

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  +Q +      + S ++   +L+++++ D IE+    + D  + 
Sbjct: 714 VRPSYVLGGRAMEIVYDEQDLRRYFQTAVSVSNDAPVLLDRFLDDAIEVDVDAICDGEMV 773

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           +    +   +    +    S +S   LPA  +  +I   ++         +  RG+    
Sbjct: 774 LIGGIMEHIE----QAGVHSGDSACSLPAYTLSQEIQDVMREQVQKLAFELQVRGLMNVQ 829

Query: 248 FLFDPLSRKVFWLEINV 264
           F       +V+ +E+N 
Sbjct: 830 FAV--KDNEVYLIEVNP 844


>gi|209546456|ref|YP_002278374.1| Carbamoyl-phosphate synthase L chain ATP-binding [Rhizobium
           leguminosarum bv. trifolii WSM2304]
 gi|209537700|gb|ACI57634.1| Carbamoyl-phosphate synthase L chain ATP-binding [Rhizobium
           leguminosarum bv. trifolii WSM2304]
          Length = 621

 Score = 69.4 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 43/225 (19%), Positives = 84/225 (37%), Gaps = 22/225 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      +E   I +  +   A      K  +K+++ + GVPV P  L 
Sbjct: 77  AIHPGYGFLSENAEFAEAVEKAGIVWVGAPAAAIRAMGLKDAAKELMQAAGVPVTPGYLG 136

Query: 114 NRFT----MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
              +          I  P +IK + GG   G+  + + Q     L     ++++    D+
Sbjct: 137 PDQSEARLAAEADAIGYPVLIKAVAGGGGKGMRRVDRAQDFAELLASCRREAAASFGDDR 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           +LIE+Y+ +   +   V  D S +               L+          PA  +    
Sbjct: 197 VLIERYIANPRHIEVQVFADKSGNCV-----HLFERDCSLQRRHQKVIEEAPAPGLDPAT 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR----KVFWLEINV 264
              +   A  A +A+   G    +F+ D  S     +++++E+N 
Sbjct: 252 RAAICDAAVKAAKAVNYVGAGTIEFIADASSGLHADRIWFMEMNT 296


>gi|149184265|ref|ZP_01862583.1| hypothetical protein ED21_26143 [Erythrobacter sp. SD-21]
 gi|148831585|gb|EDL50018.1| hypothetical protein ED21_26143 [Erythrobacter sp. SD-21]
          Length = 688

 Score = 69.4 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 36/223 (16%), Positives = 76/223 (34%), Gaps = 19/223 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H  +G   E       LE   I +      A A   DK+ SK++    GV V P  + 
Sbjct: 77  AVHPGYGFLSERASFVEALEAENIAFIGPPTNAIAAMGDKIESKKLAKEAGVNVVPGFVG 136

Query: 113 ---VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
                   ++  + I  P ++K   GG   G+ +   ++ +      +          D+
Sbjct: 137 EIRDTDHAVEISNDIGFPVMMKASAGGGGKGMRLAWSEKDVREGFEATKREGLNSFGDDR 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE++++    +   ++GD   +V  +   +        K             +   + 
Sbjct: 197 VFIEKFIENPRHIEIQILGDKHGNVIYLNERECSIQRRHQK----VVEEAPSPFVTPKMR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLF---DPLSRKVFWLEINV 264
           K +        +A+        + +    DP     ++LE+N 
Sbjct: 253 KAMGEQCVALSKAVNYHSAGTVELIVSGADPTGESFYFLEMNT 295


>gi|238782678|ref|ZP_04626708.1| Carbamoyl-phosphate synthase large chain [Yersinia bercovieri ATCC
           43970]
 gi|238716338|gb|EEQ08320.1| Carbamoyl-phosphate synthase large chain [Yersinia bercovieri ATCC
           43970]
          Length = 1077

 Score = 69.4 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 49/319 (15%), Positives = 108/319 (33%), Gaps = 52/319 (16%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D +              V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +    Q +L    +    +   A   + D+ R    +   G+    S +
Sbjct: 89  TMGGQTALNCALELERQGVLAEFGVTMIGATADAIDKAEDRRRFDIAMKKIGLDTARSGI 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     +     +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHNMEEALAVAADVGFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTKELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + +   +   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCAIEN----FDAMGIHTGDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV-----------QPGMTPVSIFP 275
           +  +    + IG   G S   F  +P + ++  +E+N              G        
Sbjct: 265 RNASMAVLREIGVETGGSNVQFSVNPKNGRLIVIEMNPRVSRSSALASKATGF----PIA 320

Query: 276 EMAA--YAGYSFRELLLWM 292
           ++AA    GY+  EL+  +
Sbjct: 321 KIAAKLAVGYTLDELMNDI 339



 Score = 60.5 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 33/221 (14%), Positives = 85/221 (38%), Gaps = 14/221 (6%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           LE   +P   +   A   + D+ R +Q V+  G+    +  V      ++    +  P V
Sbjct: 654 LEAAGVPVIGTSPDAIDRAEDRERFQQAVNRLGLKQPANATVATIEQAVEKATGLGYPLV 713

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  +  +      + S ++   +L+++++ D +E+    + D    
Sbjct: 714 VRPSYVLGGRAMEIVYDEVDLRRYFQNAVSVSNDAPVLLDRFLDDAVEVDVDAICDGERV 773

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           +    +   +    +    S +S   LPA  +  +I   +++        +  RG+    
Sbjct: 774 LIGGIMEHIE----QAGVHSGDSACSLPAYTLSKEIQDVMRQQVEKLAFELCVRGLMNVQ 829

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           F     + +V+ +E+N +   T     P ++   G    ++
Sbjct: 830 FAV--KNNEVYLIEVNPRAART----VPFVSKATGMPLAKI 864


>gi|319793966|ref|YP_004155606.1| carbamoyL-phosphate synthase, large subunit [Variovorax paradoxus
           EPS]
 gi|315596429|gb|ADU37495.1| carbamoyl-phosphate synthase, large subunit [Variovorax paradoxus
           EPS]
          Length = 1082

 Score = 69.4 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 31/217 (14%), Positives = 84/217 (38%), Gaps = 11/217 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--FTMDSQHLISPPYV 129
           LE   +P   +       + D+ R ++++   G+   P+         ++    +S P V
Sbjct: 655 LEANGVPIIGTSPDMIDAAEDRERFQKLLHELGLRQPPNATARTEPEALEKAAALSYPLV 714

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++ + + +   + ++   ++   +L+++++ D +E     + DA   
Sbjct: 715 VRPSYVLGGRAMEIVHEQRDLERYMREAVKVSNDSPVLLDRFLNDAVECDVDCIRDAEGG 774

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                V +    +    +S  ++  + P  +  +   E++R +     A+   G+    F
Sbjct: 775 TLIGGVMEHIEQAGV--HSGDSACSLPPYSLSAETIAELKRQSAAMAAALNVVGLMNVQF 832

Query: 249 LFDPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGY 283
                  K  ++ LE+N +   T     P ++   G 
Sbjct: 833 AIQQKDGKDVIYVLEVNPRASRT----VPYVSKATGI 865



 Score = 55.1 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 49/285 (17%), Positives = 100/285 (35%), Gaps = 42/285 (14%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  I              DV        ++V  ++A  +PD    
Sbjct: 29  SGVQACKALREEGYKVILINSNPATIMTDPATADVTYIEPITWQTVEKIIAKERPDAILP 88

Query: 57  VLHGNFGEDGLV----QAILELLE-------IPYTHSGILASALSMDKMRSKQVVSSCGV 105
            + G    +  +      +L+          +    +   A   + D+++ K  ++  G+
Sbjct: 89  TMGGQTALNCALDLWRNGVLDKYTGASTHKPVELIGATPEAIDKAEDRLKFKDAMTKIGL 148

Query: 106 PVCPSILVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
               S + +        Q  +  P VI+P       G  +            +    +  
Sbjct: 149 GSARSGIAHTMDEAWAVQKTLGFPTVIRPSFTLGGTGGGIAYNPDEFETICKRGIEASPT 208

Query: 164 DQLLIEQYVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IP 220
           ++LLIE+ + G  E    V+ D + + +   ++   D           +S  V PA+ + 
Sbjct: 209 NELLIEESLLGWKEYEMEVVRDKADNCIIVCSIENLDPMGVHT----GDSITVAPAQTLS 264

Query: 221 LDIYKEVQRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
              Y+ ++  +    + IG   G S   F  +P   ++  +E+N 
Sbjct: 265 DKEYQILRNASLAVLREIGVDTGGSNVQFSINPKDGRMVVIEMNP 309


>gi|294666705|ref|ZP_06731941.1| carbamoyl-phosphate synthase large subunit [Xanthomonas fuscans
           subsp. aurantifolii str. ICPB 10535]
 gi|292603530|gb|EFF46945.1| carbamoyl-phosphate synthase large subunit [Xanthomonas fuscans
           subsp. aurantifolii str. ICPB 10535]
          Length = 1080

 Score = 69.4 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 48/278 (17%), Positives = 100/278 (35%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL D G++V  +         D +            ++V  ++A  KPD    
Sbjct: 29  SGAQACKALRDEGYRVVLVNSNPATIMTDPNMADAVYIEPINWQTVEKIIAKEKPDALLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV--PVCPS 110
            + G    +  +      +LE   +    +   A  ++ D+   +  +   G+  P    
Sbjct: 89  TMGGQTALNCALDLADHGVLEKYNVELIGAKREAIRMAEDRELFRVAMGEIGLDCPTAAV 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  ++ Q  +  P +I+P       G  +    + +   + +    +   ++L+E+
Sbjct: 149 AHTLEEALEIQTRVGYPTIIRPSFTLGGSGGGIAYNREELIEIVGRGLELSPTTEVLVEE 208

Query: 171 YVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            V G  E    V+ D + + +   A+   D           +S  V PA+ +    Y+ +
Sbjct: 209 SVLGWKEFEMEVVRDTADNCIIVCAIENLDPMGVHT----GDSITVAPAQTLTDKEYQRL 264

Query: 228 QRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F   P + +V  +E+N 
Sbjct: 265 RDASIAVLRKIGVDTGGSNVQFGISPTTGRVVVIEMNP 302



 Score = 64.4 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/223 (15%), Positives = 87/223 (39%), Gaps = 12/223 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           LE   +P   +   +  L+ D+ R +Q+V   G+   P+ +       +     I  P V
Sbjct: 654 LEANGVPVIGTSPDSIDLAEDRERFQQLVDKLGLKQPPNRIARNAEEALVLAREIGYPLV 713

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLD 188
           ++P        + ++  +  +   +  +   ++   +L+++++D  +E+   ++ D   +
Sbjct: 714 VRPSYVLGGRAMEIVYGESDLARYVRDAVKVSNDSPVLLDRFLDNAVEVDVDIIADKDGN 773

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           V    V   +       +S  +S  + P  +      E++R   +  + +   G+  + F
Sbjct: 774 VLIGGV--MEHIEEAGVHSGDSSCSLPPYSLSPQTQAELRRQVVMLAEGLNVVGLMNTQF 831

Query: 249 LF---DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
                +     V+ LE+N +   T     P ++   G    ++
Sbjct: 832 AVQVNEAGDDIVYLLEVNPRASRT----VPFVSKAIGMPLAKI 870


>gi|159041862|ref|YP_001541114.1| alpha-L-glutamate ligase [Caldivirga maquilingensis IC-167]
 gi|157920697|gb|ABW02124.1| alpha-L-glutamate ligase, RimK family [Caldivirga maquilingensis
           IC-167]
          Length = 266

 Score = 69.4 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 51/277 (18%), Positives = 100/277 (36%), Gaps = 34/277 (12%)

Query: 11  EREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQA 70
           E EV L        A  + G  V+ +   + + +   +    L  N+ H        +  
Sbjct: 12  EEEVEL------IKAFNELGVNVNTLQSTKPLHVKELNGVF-LVRNLNHRTA---ITMAG 61

Query: 71  ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVI 130
           I+E      + +  L  +L+ +K  +  ++   G+PV  + +V    +D         +I
Sbjct: 62  IIENTG-GVSINRYLTLSLTWNKAITTALLKRIGLPVPDTYVVFEPIIDGVAGGGR--II 118

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190
           KP  G       ++   +     LL   + +H   LL E+  DG +L   V+  + +   
Sbjct: 119 KPASGSWGRLTAIVSDGE---AKLLIKHAKDHLPVLLQERIGDGSDLRIFVINGSVVASM 175

Query: 191 EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
               P+ D+ S   +             +P+ + +E++  A  A +A+G    +  D L 
Sbjct: 176 MRKPPQGDWRSNVARGGLA---------MPIKVNEELEEYAIKATEAVGAF-YAGVDVLI 225

Query: 251 DPLSRKVFWLEINVQPGMTPVSIF------PEMAAYA 281
                  +  EIN  P    +S         ++A   
Sbjct: 226 GRDG--YYISEINGIPEFKAISKVSGVRVSFKLAEAV 260


>gi|21108068|gb|AAM36724.1| carbamoyl-phosphate synthase large chain [Xanthomonas axonopodis
           pv. citri str. 306]
          Length = 1090

 Score = 69.4 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 48/278 (17%), Positives = 100/278 (35%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL D G++V  +         D +            ++V  ++A  KPD    
Sbjct: 39  SGAQACKALRDEGYRVVLVNSNPATIMTDPNMADAVYIEPINWQTVEKIIAKEKPDALLP 98

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV--PVCPS 110
            + G    +  +      +LE   +    +   A  ++ D+   +  +   G+  P    
Sbjct: 99  TMGGQTALNCALDLADHGVLEKYNVELIGAKREAIRMAEDRELFRVAMGEIGLDCPTAAV 158

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  ++ Q  +  P +I+P       G  +    + +   + +    +   ++L+E+
Sbjct: 159 AHTLEEALEIQTRVGYPTIIRPSFTLGGSGGGIAYNREELIEIVGRGLELSPTTEVLVEE 218

Query: 171 YVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            V G  E    V+ D + + +   A+   D           +S  V PA+ +    Y+ +
Sbjct: 219 SVLGWKEFEMEVVRDTADNCIIVCAIENLDPMGVHT----GDSITVAPAQTLTDKEYQRL 274

Query: 228 QRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F   P + +V  +E+N 
Sbjct: 275 RDASIAVLRKIGVDTGGSNVQFGISPTTGRVVVIEMNP 312



 Score = 64.4 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/223 (15%), Positives = 87/223 (39%), Gaps = 12/223 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           LE   +P   +   +  L+ D+ R +Q+V   G+   P+ +       +     I  P V
Sbjct: 664 LEANGVPVIGTSPDSIDLAEDRERFQQLVDKLGLKQPPNRIARNAEEALVLAREIGYPLV 723

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLD 188
           ++P        + ++  +  +   +  +   ++   +L+++++D  +E+   ++ D   +
Sbjct: 724 VRPSYVLGGRAMEIVYGESDLARYVRDAVKVSNDSPVLLDRFLDNAVEVDVDIIADKDGN 783

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           V    V   +       +S  +S  + P  +      E++R   +  + +   G+  + F
Sbjct: 784 VLIGGV--MEHIEEAGVHSGDSSCSLPPYSLSPQTQAELRRQVVMLAEGLNVVGLMNTQF 841

Query: 249 LF---DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
                +     V+ LE+N +   T     P ++   G    ++
Sbjct: 842 AVQVNEAGDDIVYLLEVNPRASRT----VPFVSKAIGMPLAKI 880


>gi|291336709|gb|ADD96250.1| hypothetical protein [uncultured organism MedDCM-OCT-S08-C1388]
          Length = 431

 Score = 69.4 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 42/247 (17%), Positives = 95/247 (38%), Gaps = 15/247 (6%)

Query: 28  DAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLV----QAILELLEIPYTHSG 83
                +  I   R++  ++A  KPD     + G    +  +      ILE   +    + 
Sbjct: 7   ADKIYIEPIHW-RNIEKIIAIEKPDAILPTMGGQTALNTTLDLNRHKILEKYNVEIIGAS 65

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGSSLGI 141
           + +  ++ D+   K  ++  G+    + +   F   +  Q  I  P +I+P       G 
Sbjct: 66  VDSIDMAEDRELFKNAMTDIGLETPRAYVAKDFDKALVIQKDIGYPIIIRPSFTLGGSGG 125

Query: 142 IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLD-VTEIAVPKSDF 199
            +    Q     + +    +  +++L+E+ V G  E    V+ D + + +   ++   D 
Sbjct: 126 GIAYNKQDFEKIVKRGLDLSPTNEVLLEESVIGWKEFEMEVVRDKNDNCIIVCSIENLDP 185

Query: 200 YSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGC-RGISRSDFLFDPLSRKV 257
                     +S  + PA+ +    Y+ ++  +    + IG   G S   F  +P + K+
Sbjct: 186 MGVHT----GDSITIAPAQTLTDKEYQNLRNQSIQVLRKIGVDTGGSNVQFAINPDNGKI 241

Query: 258 FWLEINV 264
           + +E+N 
Sbjct: 242 YVIEMNP 248


>gi|255348485|ref|ZP_05380492.1| acetyl-CoA carboxylase biotin carboxylase subunit [Chlamydia
           trachomatis 70]
 gi|255503027|ref|ZP_05381417.1| acetyl-CoA carboxylase biotin carboxylase subunit [Chlamydia
           trachomatis 70s]
 gi|255506698|ref|ZP_05382337.1| acetyl-CoA carboxylase biotin carboxylase subunit [Chlamydia
           trachomatis D(s)2923]
 gi|289525166|emb|CBJ14640.1| biotin carboxylase [Chlamydia trachomatis Sweden2]
 gi|296434712|gb|ADH16890.1| acetyl-CoA carboxylase biotin carboxylase subunit [Chlamydia
           trachomatis E/150]
 gi|296438430|gb|ADH20583.1| acetyl-CoA carboxylase biotin carboxylase subunit [Chlamydia
           trachomatis E/11023]
          Length = 457

 Score = 69.4 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 83/220 (37%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---S 110
            +H  +G   E+    +I E   + +      + A   DK+ +KQ+      PV P    
Sbjct: 76  AVHPGYGFLSENANFASICESCGLTFIGPSAESIATMGDKVAAKQLAKKIKCPVIPGSEG 135

Query: 111 ILVNRFT-MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSWNHGDQ 165
           ++ +    +     I  P VIK + GG   GI ++++             ++ +  +   
Sbjct: 136 VVKDEVEGIRIAEKIGFPIVIKAVAGGGGRGIRIVREKDEFYRAFTAARAEAEAGFNNPD 195

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE++++    L   V+GD   +   +            K             +  ++ 
Sbjct: 196 VYIEKFIENPRHLEVQVIGDKHGNYVYLGERDCTVQRRRQK----LIEETPSPILTPEMR 251

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +V ++A    ++ G   +   +FL D   R  +++E+N 
Sbjct: 252 AKVGKVAVDLARSAGYFSVGTVEFLLDKEKR-FYFMEMNT 290


>gi|238918633|ref|YP_002932147.1| carbamoyl phosphate synthase large subunit [Edwardsiella ictaluri
           93-146]
 gi|238868201|gb|ACR67912.1| carbamoyl-phosphate synthase, large subunit, putative [Edwardsiella
           ictaluri 93-146]
          Length = 1073

 Score = 69.4 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 46/278 (16%), Positives = 98/278 (35%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D +              V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVVLVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +    Q +L    +    +   A   + D+ R  Q +   G+    S +
Sbjct: 89  TMGGQTALNCALELERQGVLAEFGVTMIGATADAIDKAEDRRRFDQAMKKIGLDTARSGI 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +    ++     +  P +I+P       G  +    +       +    +  ++LLI++
Sbjct: 149 AHSMEESLAVAEQVGFPCIIRPSFTMGGTGGGIAYNREEFEEICARGLDLSPTNELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + + +   A+   D           +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCAIENIDPMGIHT----GDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P S ++  +E+N 
Sbjct: 265 RNASMAVLREIGVETGGSNVQFAVNPKSGRLIVIEMNP 302



 Score = 65.9 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 33/197 (16%), Positives = 76/197 (38%), Gaps = 10/197 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ--HLISPPYV 129
           LE   +P   +   A   + D+ R ++ V+  G+    +  V       +    I  P V
Sbjct: 654 LEAAGVPVIGTSPDAIDRAEDRERFQKAVNRLGLKQPANATVTAIEQAVEKGAQIGYPLV 713

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  +  +      + S ++   +L++ ++ D +E+    + D    
Sbjct: 714 VRPSYVLGGRAMEIVYDESDLRRYFQTAVSVSNDAPVLLDHFLDDAVEVDVDAICDGERV 773

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           +    +   +    +    S +S   LPA  +  +I  E++R A      +  RG+    
Sbjct: 774 LIGGIMEHIE----QAGVHSGDSACSLPAYTLSAEIQDELRRQAEKLAMELCVRGLMNVQ 829

Query: 248 FLFDPLSRKVFWLEINV 264
           F       +V+ +E+N 
Sbjct: 830 FAV--KDNQVYLIEVNP 844


>gi|78047465|ref|YP_363640.1| carbamoyl phosphate synthase large subunit [Xanthomonas campestris
           pv. vesicatoria str. 85-10]
 gi|78035895|emb|CAJ23586.1| carbamoyl-phosphate synthase large chain [Xanthomonas campestris
           pv. vesicatoria str. 85-10]
          Length = 1080

 Score = 69.4 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 48/278 (17%), Positives = 100/278 (35%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL D G++V  +         D +            ++V  ++A  KPD    
Sbjct: 29  SGAQACKALRDEGYRVVLVNSNPATIMTDPNMADAVYIEPINWQTVEKIIAKEKPDALLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV--PVCPS 110
            + G    +  +      +LE   +    +   A  ++ D+   +  +   G+  P    
Sbjct: 89  TMGGQTALNCALDLADHGVLEKYNVELIGAKREAIRMAEDRELFRVAMGEIGLDCPTAAV 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  ++ Q  +  P +I+P       G  +    + +   + +    +   ++L+E+
Sbjct: 149 AHTLEEALEIQTRVGYPTIIRPSFTLGGSGGGIAYNREELIEIVGRGLELSPTTEVLVEE 208

Query: 171 YVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            V G  E    V+ D + + +   A+   D           +S  V PA+ +    Y+ +
Sbjct: 209 SVLGWKEFEMEVVRDTADNCIIVCAIENLDPMGVHT----GDSITVAPAQTLTDKEYQRL 264

Query: 228 QRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F   P + +V  +E+N 
Sbjct: 265 RDASIAVLRKIGVDTGGSNVQFGISPTTGRVVVIEMNP 302



 Score = 64.4 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/223 (15%), Positives = 87/223 (39%), Gaps = 12/223 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           LE   +P   +   +  L+ D+ R +Q+V   G+   P+ +       +     I  P V
Sbjct: 654 LEANGVPVIGTSPDSIDLAEDRERFQQLVDKLGLKQPPNRIARNAEEALVLAREIGYPLV 713

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLD 188
           ++P        + ++  +  +   +  +   ++   +L+++++D  +E+   ++ D   +
Sbjct: 714 VRPSYVLGGRAMEIVYGESDLARYVRDAVKVSNDSPVLLDRFLDNAVEVDVDIIADKDGN 773

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           V    V   +       +S  +S  + P  +      E++R   +  + +   G+  + F
Sbjct: 774 VLIGGV--MEHIEEAGVHSGDSSCSLPPYSLSPQTQAELRRQVVMLAEGLNVVGLMNTQF 831

Query: 249 LF---DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
                +     V+ LE+N +   T     P ++   G    ++
Sbjct: 832 AVQVNEAGDDIVYLLEVNPRASRT----VPFVSKAIGMPLAKI 870


>gi|114331874|ref|YP_748096.1| acetyl-CoA carboxylase, biotin carboxylase [Nitrosomonas eutropha
           C91]
 gi|114308888|gb|ABI60131.1| acetyl-CoA carboxylase carboxyltransferase subunit alpha
           [Nitrosomonas eutropha C91]
          Length = 452

 Score = 69.4 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 35/222 (15%), Positives = 82/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         L  DK+ +K  +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAERVEKSGFFFIGPRPDTIRLMGDKVSAKHAMLQAGVPCVPGSEG 136

Query: 112 LVNRFTMDSQHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGD 164
            +     + + +   I  P +IK   GG   G+ V+  + ++   ++    ++ +     
Sbjct: 137 ALPDSLDEVRKIIKEIGYPVIIKAAGGGGGRGMRVVYTEAALSNAVITTRNEAQAAFGNP 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            +  E+Y++    +   ++ D   +   +            K          PA+ I + 
Sbjct: 197 VVYAEKYLENPRHIEFQILADEYGNTVHLGERDCSMQRRHQK-----IIEEAPARGISIK 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +  ++      A + I  RG+   +FL+   + + +++E+N 
Sbjct: 252 LRNQIGERCVEACKRINYRGVGTFEFLY--ENNEFYFIEMNT 291


>gi|237802554|ref|YP_002887748.1| acetyl-CoA carboxylase biotin carboxylase subunit [Chlamydia
           trachomatis B/Jali20/OT]
 gi|255310925|ref|ZP_05353495.1| acetyl-CoA carboxylase biotin carboxylase subunit [Chlamydia
           trachomatis 6276]
 gi|255317225|ref|ZP_05358471.1| acetyl-CoA carboxylase biotin carboxylase subunit [Chlamydia
           trachomatis 6276s]
 gi|231273788|emb|CAX10571.1| biotin carboxylase [Chlamydia trachomatis B/Jali20/OT]
 gi|296435640|gb|ADH17814.1| acetyl-CoA carboxylase biotin carboxylase subunit [Chlamydia
           trachomatis G/9768]
 gi|296437500|gb|ADH19661.1| acetyl-CoA carboxylase biotin carboxylase subunit [Chlamydia
           trachomatis G/11074]
 gi|297139999|gb|ADH96757.1| acetyl-CoA carboxylase biotin carboxylase subunit [Chlamydia
           trachomatis G/9301]
          Length = 457

 Score = 69.4 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 83/220 (37%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---S 110
            +H  +G   E+    +I E   + +      + A   DK+ +KQ+      PV P    
Sbjct: 76  AVHPGYGFLSENANFASICESCGLTFIGPSAESIATMGDKVAAKQLAKKIKCPVIPGSEG 135

Query: 111 ILVNRFT-MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSWNHGDQ 165
           ++ +    +     I  P VIK + GG   GI ++++             ++ +  +   
Sbjct: 136 VVKDEVEGIRIAEKIGFPIVIKAVAGGGGRGIRIVREKDEFYRAFTAARAEAEAGFNNPD 195

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE++++    L   V+GD   +   +            K             +  ++ 
Sbjct: 196 VYIEKFIENPRHLEVQVIGDKHGNYVYLGERDCTVQRRRQK----LIEETPSPILTPEMR 251

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +V ++A    ++ G   +   +FL D   R  +++E+N 
Sbjct: 252 AKVGKVAVDLARSAGYFSVGTVEFLLDKEKR-FYFMEMNT 290


>gi|269926476|ref|YP_003323099.1| carbamoyl-phosphate synthase, large subunit [Thermobaculum terrenum
           ATCC BAA-798]
 gi|269790136|gb|ACZ42277.1| carbamoyl-phosphate synthase, large subunit [Thermobaculum terrenum
           ATCC BAA-798]
          Length = 1095

 Score = 69.4 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 45/275 (16%), Positives = 101/275 (36%), Gaps = 30/275 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL + G  V  ++ + +                     +  +++  +PD    
Sbjct: 29  SGSQACKALREEGIFVVLVNSNPATIMTDEATADRVYIEPLNVDVLEKIISRERPDGILP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G  G +  V+     I++   +    + + +   + D++  KQ++   G PV  S+ 
Sbjct: 89  TLGGQTGLNLAVELASAGIVDKYGVKLLGTSLESIKQAEDRLLFKQLLQEIGEPVIESMT 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           V+  +  +   + I  P + +P       G  +      +   +  S   +   Q L+E+
Sbjct: 149 VHSVQEAIAFANQIGYPLISRPAYTLGGTGGGIAHNQGELTKLIEHSLRASPIGQTLLER 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
            ++G  E+   V+ D++ +   I V   +       ++  +        +    Y+ ++ 
Sbjct: 209 SIEGWKEIEYEVIRDSADNA--IIVCNMENIDPVGVHTGDSIVVAPSQTLTDRQYQILRD 266

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            A    +A+   G     F  DP S   + +E+N 
Sbjct: 267 SALRIVRALKIEGGCNVQFALDPKSDDYYVIEVNP 301



 Score = 67.5 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/196 (14%), Positives = 74/196 (37%), Gaps = 9/196 (4%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQHLISPPYV 129
           L         S + +  L+ D+ R   +++S G+   P          +++   I  P +
Sbjct: 668 LHRAGFKVLGSSLESIDLAEDRERFDGLLNSLGLLRPPGGTARDLDSALETATRIGYPLL 727

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           ++P        + ++  +  +   +  ++  +    +L+++Y++G E+    + D    V
Sbjct: 728 VRPSYVLGGQAMRIVYNEVELLDYIDAATEVSGDHPVLLDRYIEGTEVEVDAVSDGETVV 787

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               V   +           +S  V P   +      +++ +     +A+  +G+    F
Sbjct: 788 IPGIVEHIERAGVHS----GDSFGVYPQITLDDRDVSQIEEITVKLARAMNVKGLMNVQF 843

Query: 249 LFDPLSRKVFWLEINV 264
           +      +V+ LE+N 
Sbjct: 844 VV--QDHQVYILEVNP 857


>gi|148926055|ref|ZP_01809741.1| putative pyruvate carboxylase A subunit [Campylobacter jejuni
           subsp. jejuni CG8486]
 gi|145845534|gb|EDK22626.1| putative pyruvate carboxylase A subunit [Campylobacter jejuni
           subsp. jejuni CG8486]
          Length = 481

 Score = 69.4 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 91/222 (40%), Gaps = 20/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H  +G   E+       E   I +            +K  ++++++  G+P+ P    
Sbjct: 78  AIHPGYGFLSENYEFAKACEDTGIIFIGPKSEVIHKMGNKNIARKLMAKNGIPIVPGTEK 137

Query: 113 VNRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGD 164
           +N ++M+        I  P ++K   GG   GI V+ K+Q +         ++ ++ + D
Sbjct: 138 LNSYSMEEIKIFAEKIGYPVILKASGGGGGRGIRVVHKEQDLENAFESCKREALTYFNND 197

Query: 165 QLLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
           ++ +E+Y V+   +   ++GD   ++  +            K        + P   I  +
Sbjct: 198 EVFMEKYVVNPRHIEFQILGDNYGNIIHLCERDCSIQRRHQK-----VIEIAPCPGISDN 252

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + K +   A  A +A+G       +FL D  +R  +++E+N 
Sbjct: 253 LRKTMGVTAVAAAKAVGYTNAGTIEFLLDDYNR-FYFMEMNT 293


>gi|17544984|ref|NP_518386.1| acyl-CoA carboxylase subunit alpha [Ralstonia solanacearum GMI1000]
 gi|17427274|emb|CAD13793.1| putative acetyl/propionyl-coa carboxylase, alpha subunit protein
           [Ralstonia solanacearum GMI1000]
          Length = 712

 Score = 69.4 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 79/221 (35%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+           + +      A      K  +K ++ + GVP+ P    
Sbjct: 114 AIHPGYGFLSENEAFARACSEAGLVFVGPPASAIEAMGSKSAAKALMETAGVPLVPGYHG 173

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
           +             I  P +IK   GG   G+ V++  ++    L     ++SS    D+
Sbjct: 174 DNQDAAFLRAQADRIGYPVLIKASAGGGGKGMRVVETGEAFAAALASVKREASSSFGDDR 233

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           +LIE+Y+     +   V  D   D   +           ++          PA  +  + 
Sbjct: 234 VLIEKYLTRPRHIEIQVFADGFGDAVYL-----FERDCSVQRRHQKVLEEAPAPGMTPER 288

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +   A  A +A+G  G    +F+ D      +++E+N 
Sbjct: 289 RRAMGEAAVAAARAVGYVGAGTVEFIVDE-DGTFYFMEMNT 328


>gi|238797496|ref|ZP_04640994.1| Carbamoyl-phosphate synthase large chain [Yersinia mollaretii ATCC
           43969]
 gi|238718637|gb|EEQ10455.1| Carbamoyl-phosphate synthase large chain [Yersinia mollaretii ATCC
           43969]
          Length = 1077

 Score = 69.4 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 49/319 (15%), Positives = 108/319 (33%), Gaps = 52/319 (16%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D +              V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +    Q +L    +    +   A   + D+ R    +   G+    S +
Sbjct: 89  TMGGQTALNCALELERQGVLAEFGVTMIGATADAIDKAEDRRRFDIAMKKIGLDTARSGI 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     +     +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHNMEEALAVAADVGFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTKELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + +   +   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCAIEN----FDAMGIHTGDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV-----------QPGMTPVSIFP 275
           +  +    + IG   G S   F  +P + ++  +E+N              G        
Sbjct: 265 RNASMAVLREIGVETGGSNVQFSVNPKNGRLIVIEMNPRVSRSSALASKATGF----PIA 320

Query: 276 EMAA--YAGYSFRELLLWM 292
           ++AA    GY+  EL+  +
Sbjct: 321 KIAAKLAVGYTLDELMNDI 339



 Score = 60.5 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 33/221 (14%), Positives = 84/221 (38%), Gaps = 14/221 (6%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL--ISPPYV 129
           LE   +P   +   A   + D+ R +Q V+  G+    +  V       +    +  P V
Sbjct: 654 LEAAGVPVIGTSPDAIDRAEDRERFQQAVNRLGLKQPANATVATIDQAVEKATGLGYPLV 713

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  +  +      + S ++   +L+++++ D +E+    + D    
Sbjct: 714 VRPSYVLGGRAMEIVYDEVDLRRYFQNAVSVSNDAPVLLDRFLDDAVEVDVDAICDGERV 773

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           +    +   +    +    S +S   LPA  +  +I   +++        +  RG+    
Sbjct: 774 LIGGIMEHIE----QAGVHSGDSACSLPAYTLSKEIQDVMRQQVEKLAFELCVRGLMNVQ 829

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           F     + +V+ +E+N +   T     P ++   G    ++
Sbjct: 830 FAV--KNNEVYLIEVNPRAART----VPFVSKATGMPLAKI 864


>gi|307544770|ref|YP_003897249.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Halomonas
           elongata DSM 2581]
 gi|307216794|emb|CBV42064.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Halomonas
           elongata DSM 2581]
          Length = 446

 Score = 69.4 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 77/222 (34%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      +E     +         L  DK+ +   +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAEQVERSGFTFIGPSAETIRLMGDKVSAINAMKEAGVPTVPGSNG 136

Query: 114 NRFTMDSQ-----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GD 164
                + +       I  P +IK   GG   G+ V+  +  +   +  + +  H      
Sbjct: 137 PLGDDEGEILATARRIGYPVIIKAAAGGGGRGMRVVHAEGHLLSAVNVTRTEAHSSFGDG 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E++++    +   V+ D   +   +           L+          PA  +   
Sbjct: 197 TVYMEKFLENPRHVEVQVLADGQGNAIHLY-----DRDCSLQRRHQKVLEEAPAPGLDQQ 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             ++V +    A   IG RG    +FL+   + + F++E+N 
Sbjct: 252 AREQVFKACRDACVKIGYRGAGTFEFLY--ENGEFFFIEMNT 291


>gi|167562074|ref|ZP_02354990.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia
           oklahomensis EO147]
          Length = 393

 Score = 69.4 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 52/277 (18%), Positives = 95/277 (34%), Gaps = 38/277 (13%)

Query: 19  GKACASALEDAGFKVSQID----------------VDRSVGLVLAHL----KPDLAFNVL 58
           GK    AL+  G +V  +D                +D +    L  L    +P L    +
Sbjct: 27  GKEVIIALQRLGVEVIAVDRYPNAPGHQVAHRAHVIDMTDPDALRALVDAERPHLVVPEI 86

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKM-RSKQVVSSCGVPVCPSILVNRFT 117
                 D L  A +E   I        A+ L+M++    +    + G+P  P      F 
Sbjct: 87  EAI-ATDAL--ASIEAAGIAEVIPTARATQLTMNREGIRRLAAETLGLPTSPYAFAQSFD 143

Query: 118 M--DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH--GDQLLIEQYV- 172
               +   I  P V+KP+   S  G  V+K+D  +      + +       ++++E +V 
Sbjct: 144 EFKAAVARIGFPCVVKPVMSSSGKGQSVVKRDADVESAWQYAMAGGRVNHGRVIVEGFVQ 203

Query: 173 ---DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
              +  +LT   +  ASL+                 Y         P  +     +  + 
Sbjct: 204 FDYEITQLTVRAIDPASLETRTYFCEPIGHVQVAGDY----VESWQPQPMSAKALERSRD 259

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
           +A     A+G RGI   +         V++ E++ +P
Sbjct: 260 IAHRVTAALGGRGIFGVELFVR--GDDVWFSEVSPRP 294


>gi|103486474|ref|YP_616035.1| carbamoyl phosphate synthase large subunit [Sphingopyxis alaskensis
           RB2256]
 gi|98976551|gb|ABF52702.1| carbamoyl-phosphate synthase large subunit [Sphingopyxis alaskensis
           RB2256]
          Length = 1106

 Score = 69.4 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 57/285 (20%), Positives = 110/285 (38%), Gaps = 37/285 (12%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNF--GE-DGLV---- 68
           ALE+AG++   I         D D S  L    L  +    +LH     GE  G++    
Sbjct: 620 ALEEAGYETIMINCNPETVSTDYDTSDRLYFEPLTAEDVLEILHVEMSKGELVGVIVQFG 679

Query: 69  --------QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-SILVNRFTMD 119
                   QA+ +   IP   +   A  L+ D+ R   +V+  G+      I  +R    
Sbjct: 680 GQTPLKLAQALSD-AGIPILGTSPDAIDLAEDRERFAALVNKLGLKQPENGIARSREEAI 738

Query: 120 S-QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIEL 177
           +    I  P + +P        + ++     +   +  +   +    +LI++Y+ D IE+
Sbjct: 739 AVAARIGYPVLTRPSYVLGGRAMEIVDDQAQLENYIETAVQVSGTSPVLIDRYLRDAIEV 798

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
               + D +  V    +   +       +S  ++  + P  +P DI  E++R      +A
Sbjct: 799 DVDALCDGTDVVVAGVLQHIEEAGV---HSGDSACSIPPYSLPADIIAEIERQTDALARA 855

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAG 282
           +G RG+   +  +     +V+ +E+N +   T     P +A   G
Sbjct: 856 LGVRGL--MNVQYAVKDGEVYLIEVNPRASRT----VPFVAKAVG 894



 Score = 55.9 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 93/278 (33%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G+++  +         D D              V  ++A  +PD    
Sbjct: 29  SGTQAIKALKEEGYRIVLVNSNPATIMTDPDLADATYVEPITPEIVAKIIAKERPDAVLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +       L    +    +   A   + D+ + ++ +   G+    S +
Sbjct: 89  TMGGQTALNTALALFNDGTLAKYGVEMIGAKAEAIDKAEDRQKFREAMDRIGLESARSGI 148

Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +              P +I+P       G  +    +     +      +   ++LIE+
Sbjct: 149 AHTLEEAFAVLERTGLPSIIRPSFTLGGTGGGIAYNREEFEQIVRGGLIASPTTEVLIEE 208

Query: 171 YVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEV 227
            + G  E    V+ DA  + +   ++   D           +S  V PA  +    Y+ +
Sbjct: 209 SLLGWKEYEMEVVRDAKDNCIIICSIENVDPMGVHT----GDSITVAPALTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P   ++  +E+N 
Sbjct: 265 RSASIAVLREIGVETGGSNVQFAVNPKDGRLIVIEMNP 302


>gi|120405799|ref|YP_955628.1| carbamoyl-phosphate synthase ATP-binding subunit L [Mycobacterium
           vanbaalenii PYR-1]
 gi|119958617|gb|ABM15622.1| Carbamoyl-phosphate synthase L chain, ATP-binding protein
           [Mycobacterium vanbaalenii PYR-1]
          Length = 656

 Score = 69.4 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 43/219 (19%), Positives = 84/219 (38%), Gaps = 22/219 (10%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+    A ++   + +    + A A    K+ +K+++++ GVPV     +
Sbjct: 74  AIHPGYGFLSENPDFAAAVQDAGLRWIGPPVAAVAAMGSKIEAKKLMAAAGVPV-----L 128

Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQLLIE 169
           +    D+      P ++K   GG   G+ V++    +P  +  +            +  E
Sbjct: 129 DELDPDTVTADMLPVLVKASAGGGGRGMRVVRDLAELPAQVEAARREAQSAFGDPTVFCE 188

Query: 170 QYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY---K 225
           +Y+D G  +   VM D    V  +   +        K          P+ +   +     
Sbjct: 189 RYLDAGHHVEVQVMADVHGTVWAVGERECSIQRRHQK-----IIEEAPSPLVERVAGMRD 243

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           ++   A LA  AIG  G    +F+ D      F+LE+N 
Sbjct: 244 KLFEAARLAATAIGYSGAGTVEFMADDQ-GAFFFLEMNT 281


>gi|89895605|ref|YP_519092.1| hypothetical protein DSY2859 [Desulfitobacterium hafniense Y51]
 gi|89335053|dbj|BAE84648.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 1065

 Score = 69.4 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 48/315 (15%), Positives = 113/315 (35%), Gaps = 39/315 (12%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQIDVD---------------------RSVGLV 45
           G ++E + +   G     AL++ G +V  ++ +                       +  +
Sbjct: 27  GQAAEFDYA---GTQACRALQEEGVEVVLVNSNPATIMTDQEVADRIYIEPLTVEFLERI 83

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   +PD     + G  G +   Q     IL+   +    + + +   + D+   + ++ 
Sbjct: 84  IERERPDGIIATMGGQTGLNLAFQLAEKGILQRCGVQLMGTSLDSITKAEDREHFRSLMK 143

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G PV PS++V+     +     I  P +++P       G  +    + +         
Sbjct: 144 MLGEPVPPSVIVSDLEEALSFGEEIGYPVIVRPAYTLGGTGGGIAHNREQLREIAKSGLQ 203

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +  DQ+L+E+ V G  E+   V+ D+  +   I     +       ++  +S  V P +
Sbjct: 204 ASLIDQILVEKSVAGWKEIEYEVLRDSQGNCITIC--NMENMDPVGVHT-GDSMVVAPCQ 260

Query: 219 -IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
            +     + ++  +     A+G  G     +   P   +   +E+N  P ++  S     
Sbjct: 261 TLTDREVQALRTSSRKIVAALGIEGGCNVQYALHPERLEYVVIEVN--PRLSRSS--ALA 316

Query: 278 AAYAGYSFRELLLWM 292
           +   GY   ++   +
Sbjct: 317 SKATGYPIAKVAAKI 331



 Score = 45.5 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 27/182 (14%), Positives = 70/182 (38%), Gaps = 17/182 (9%)

Query: 116 FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175
             ++    I  P +I+P        + ++     +   + ++ +   G +L ++QY+ G 
Sbjct: 698 EAVEVAARIGYPLMIRPSFVLGGRAMEIVYSASELENVVNRAMADFPGQELWMDQYLVGK 757

Query: 176 ELTCGVMGDA---SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLA 231
           E+    + D    SL      + ++  +S        +S  V P + +   + + +  L 
Sbjct: 758 EVEVDAISDGKNVSLPGIMEHLERAGVHS-------GDSIAVYPPQTLSEPLIQRITLLT 810

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G+    ++      +V+ +E+N +   T     P ++   G S  +    
Sbjct: 811 TEIARALNVIGLLNIQYVI--FQDEVYVIEVNPRSSRT----VPFISKVTGLSIVDYATE 864

Query: 292 MV 293
           ++
Sbjct: 865 VI 866


>gi|296131892|ref|YP_003639139.1| carbamoyl-phosphate synthase, large subunit [Thermincola sp. JR]
 gi|296030470|gb|ADG81238.1| carbamoyl-phosphate synthase, large subunit [Thermincola potens JR]
          Length = 1071

 Score = 69.4 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 31/232 (13%), Positives = 83/232 (35%), Gaps = 18/232 (7%)

Query: 68  VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLIS 125
           +   L    +    + +     + D+ + ++++ +  +P          +   +    + 
Sbjct: 644 LAGDLSGAGVRVLGTPVAQIDEAEDREKFERLLRTLAIPQSEGKTAFTVKEAQEIAEKLG 703

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            P +++P        + ++     +   +  +   +    +L+++Y+ G E+    +GD 
Sbjct: 704 YPVLVRPSYVLGGRAMEIVHNTGELLKYMETAVQVSPKHPVLVDKYIRGKEVEVDAIGDG 763

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGIS 244
                 I +P    +       S +S    P + +  +  ++V        +A+   G+ 
Sbjct: 764 E----NILIPGIMEHIERAGVHSGDSIACYPVQTLTQEEQQKVIDYTTRIAKALKICGLI 819

Query: 245 RSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPE---MAAYA-GYSFRE 287
              ++      +V+ LE+N       P ++ V+  P     A    G S RE
Sbjct: 820 NIQYVVGEE--EVYVLEVNPRASRTVPVLSKVTGVPMVSVAARAMVGRSLRE 869



 Score = 64.8 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 48/287 (16%), Positives = 112/287 (39%), Gaps = 35/287 (12%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI---------DVD------------RSVGLV 45
           G ++E + +   G     AL++ G +V  +         D               SV  +
Sbjct: 21  GQAAEFDYA---GTQACKALKEEGLEVVLVNSNPATIMTDGHIADKVYIEPLTWESVAKI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   KPD     L G  G +  V+     +L+   +    + +     + D+   K+++ 
Sbjct: 78  IRLEKPDGLLPTLGGQTGLNIAVELAEKGVLQEEGVALLGTSLETIKRAEDREMFKELML 137

Query: 102 SCGVPVCPSILVNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
               P+  S++++R     +    +  P +++P       G  ++  +  +   + +  +
Sbjct: 138 EINEPIPESVIISRLDEAFEFVKRVGYPVIVRPAYTLGGTGGGIVGNEAELTEIVTKGLN 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +  +Q+L+E+ V G  E+   VM D++ +   I     +     +   + +S  V P++
Sbjct: 198 ASLINQVLLERSVAGWKEIEYEVMRDSADNCITIC--NMENLD-PVGIHTGDSIVVAPSQ 254

Query: 219 -IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +    Y+ ++  A    +A+   G     F  +P S +   +E+N 
Sbjct: 255 TLSDKEYQMLRAAALKIIRALKIEGGCNVQFALNPNSFEYVVIEVNP 301


>gi|161485715|ref|NP_642188.2| carbamoyl phosphate synthase large subunit [Xanthomonas axonopodis
           pv. citri str. 306]
 gi|22095491|sp|P58942|CARB_XANAC RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
          Length = 1080

 Score = 69.4 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 48/278 (17%), Positives = 100/278 (35%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL D G++V  +         D +            ++V  ++A  KPD    
Sbjct: 29  SGAQACKALRDEGYRVVLVNSNPATIMTDPNMADAVYIEPINWQTVEKIIAKEKPDALLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV--PVCPS 110
            + G    +  +      +LE   +    +   A  ++ D+   +  +   G+  P    
Sbjct: 89  TMGGQTALNCALDLADHGVLEKYNVELIGAKREAIRMAEDRELFRVAMGEIGLDCPTAAV 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  ++ Q  +  P +I+P       G  +    + +   + +    +   ++L+E+
Sbjct: 149 AHTLEEALEIQTRVGYPTIIRPSFTLGGSGGGIAYNREELIEIVGRGLELSPTTEVLVEE 208

Query: 171 YVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            V G  E    V+ D + + +   A+   D           +S  V PA+ +    Y+ +
Sbjct: 209 SVLGWKEFEMEVVRDTADNCIIVCAIENLDPMGVHT----GDSITVAPAQTLTDKEYQRL 264

Query: 228 QRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F   P + +V  +E+N 
Sbjct: 265 RDASIAVLRKIGVDTGGSNVQFGISPTTGRVVVIEMNP 302



 Score = 64.4 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/223 (15%), Positives = 87/223 (39%), Gaps = 12/223 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           LE   +P   +   +  L+ D+ R +Q+V   G+   P+ +       +     I  P V
Sbjct: 654 LEANGVPVIGTSPDSIDLAEDRERFQQLVDKLGLKQPPNRIARNAEEALVLAREIGYPLV 713

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLD 188
           ++P        + ++  +  +   +  +   ++   +L+++++D  +E+   ++ D   +
Sbjct: 714 VRPSYVLGGRAMEIVYGESDLARYVRDAVKVSNDSPVLLDRFLDNAVEVDVDIIADKDGN 773

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           V    V   +       +S  +S  + P  +      E++R   +  + +   G+  + F
Sbjct: 774 VLIGGV--MEHIEEAGVHSGDSSCSLPPYSLSPQTQAELRRQVVMLAEGLNVVGLMNTQF 831

Query: 249 LF---DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
                +     V+ LE+N +   T     P ++   G    ++
Sbjct: 832 AVQVNEAGDDIVYLLEVNPRASRT----VPFVSKAIGMPLAKI 870


>gi|295837391|ref|ZP_06824324.1| carboxylase [Streptomyces sp. SPB74]
 gi|295826511|gb|EDY43029.2| carboxylase [Streptomyces sp. SPB74]
          Length = 408

 Score = 69.4 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 43/195 (22%), Positives = 80/195 (41%), Gaps = 24/195 (12%)

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL--ISPPYVIKPLKGGSS 138
            + + A     DK  ++++++  GVP   SI V      +Q    I  P V+KP    +S
Sbjct: 92  GNSVEAMLACRDKGTTRRLLAEAGVPSARSIRVQSAHEAAQAAATIGYPVVLKPASHAAS 151

Query: 139 LGIIVIKKDQSIPLD--LLQSSSWNHGDQ---LLIEQYVDGIELTCGVM----GDASLDV 189
           +G+I   + +++        + +   G +   +L+E+Y+DG E++   M       +L V
Sbjct: 152 IGVIKAARSEALAEAWEFANAGAGEQGPEGHGVLVEEYLDGPEISVECMTFAGETVALAV 211

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR-GISRSDF 248
           T   V  + F+         ++       +PL     V  +A  A  A+G   GIS  + 
Sbjct: 212 TRKEVAFAPFFE-----EVGHTVERDDPLLPL-----VSPVARQALAALGVTDGISHVEM 261

Query: 249 LFDPLSRKVFWLEIN 263
                      +E+N
Sbjct: 262 RVTK--NGPRIIEVN 274


>gi|184156087|ref|YP_001844427.1| biotin carboxylase [Lactobacillus fermentum IFO 3956]
 gi|183227431|dbj|BAG27947.1| biotin carboxylase [Lactobacillus fermentum IFO 3956]
          Length = 462

 Score = 69.4 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 29/198 (14%), Positives = 72/198 (36%), Gaps = 14/198 (7%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD----SQHLISPPYVIK 131
           ++ +        AL  DK  ++  +   G+P+          +         +  P ++K
Sbjct: 114 DLTFIGPSPETIALLGDKEAARLTMRRAGLPLVKGSQEPLHDLATALAQAEEVGYPVMLK 173

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQLLIEQYV-DGIELTCGVMGDAS 186
              GG   G+ +I+  + +         ++ +  + DQ+ +EQY+     +   V+GD  
Sbjct: 174 AAAGGGGKGMRIIRNAEEMEAKFAVAQDEARASFNDDQMYLEQYLAHPRHIEVQVIGDQY 233

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRS 246
            +   +        +   K           A +P  + + +   +  A   +   G+   
Sbjct: 234 GNALALGERDCTIQARHQK----VIEEAPAAVLPAPVREAMLAQSEQAAAQLKYEGLGTI 289

Query: 247 DFLFDPLSRKVFWLEINV 264
           +FL++      +++E+N 
Sbjct: 290 EFLYNE-DGSYYFMEMNT 306


>gi|37524606|ref|NP_927950.1| carbamoyl phosphate synthase large subunit [Photorhabdus
           luminescens subsp. laumondii TTO1]
 gi|36784030|emb|CAE12899.1| carbamoylphosphate synthetase large subunit [Photorhabdus
           luminescens subsp. laumondii TTO1]
          Length = 1074

 Score = 69.4 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 50/319 (15%), Positives = 110/319 (34%), Gaps = 52/319 (16%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D +              V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVVLVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAILP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +    Q +LE   +    +   A   + D+ R    +   G+    S +
Sbjct: 89  TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRCRFDIAMKKIGLETPRSGI 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     +     +  P +I+P       G  +    +       +    +  ++LLI++
Sbjct: 149 AHSMEEALAVADQVGFPCIIRPSFTMGGSGGGIAYNREEFEEICERGLDLSPTNELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + +   +   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIEN----FDAMGIHTGDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV-----------QPGMTPVSIFP 275
           +  +    + IG   G S   F  +P + ++  +E+N              G        
Sbjct: 265 RNASMAVLREIGVETGGSNVQFAVNPKNGRLVIIEMNPRVSRSSALASKATGF----PIA 320

Query: 276 EMAA--YAGYSFRELLLWM 292
           ++AA    GY+  EL+  +
Sbjct: 321 KIAAKLAVGYTLDELMNDI 339



 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 79/197 (40%), Gaps = 10/197 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           LE+  +P   +   A   + D+ R KQ V+  G+    +  V      ++  +++  P V
Sbjct: 654 LEIAGVPIIGTSPDAIDRAEDRERFKQAVNRLGLKQPENATVTTIERAVEKANILGYPLV 713

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  +  +      + + ++   +L++ ++ D +E+    + D    
Sbjct: 714 VRPSYVLGGRAMEIVYDEVDLRRYFQTAVNVSNDAPVLLDCFLDDAVEVDVDAICDGERV 773

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           +    +   +    +    S +S   LPA  +  +I   +++        +G RG+    
Sbjct: 774 LIGGIMEHIE----QAGVHSGDSACSLPAYTLSQEIQDVMRQQVEKLAFELGVRGLMNVQ 829

Query: 248 FLFDPLSRKVFWLEINV 264
           F       +V+ +E+N 
Sbjct: 830 FAV--KDDEVYLIEVNP 844


>gi|113476462|ref|YP_722523.1| carbamoyl phosphate synthase large subunit [Trichodesmium
           erythraeum IMS101]
 gi|110167510|gb|ABG52050.1| carbamoyl-phosphate synthase large subunit [Trichodesmium
           erythraeum IMS101]
          Length = 1076

 Score = 69.4 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 54/279 (19%), Positives = 103/279 (36%), Gaps = 36/279 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + GF+V  +         D +              +  V+A  +PD    
Sbjct: 29  SGTQACKALREEGFEVVLVNSNPATIMTDPEIAECTYIEPLTPELIEKVIAKERPDALLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  V       L    +    + + A  ++ D+   K+ +   G+ VCPS +
Sbjct: 89  TMGGQTALNIAVSLAKNGTLAKYGVDLIGAKLPAIEMAEDRQLFKEAMGRIGIQVCPSGI 148

Query: 113 VNRFTMD---SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            + +      +Q + + P +I+P       G  +    +   +        +   Q+L+E
Sbjct: 149 ASNWEEAKAIAQKIGTYPLIIRPAFTLGGTGGGIAYNQEEYEVMAQGGIDASPVSQILVE 208

Query: 170 QYVDG-IELTCGVMGDASLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPAK-IPLDIYKE 226
           + + G  E    VM D + +V  I   ++ D           +S  V PA+ +    Y+ 
Sbjct: 209 KSLIGWKEYELEVMRDLADNVVIICSIENIDPMGIHT----GDSVTVAPAQTLTDKEYQR 264

Query: 227 VQRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           ++  +    + IG   G S   F   PL+  V  +E+N 
Sbjct: 265 LRDASIKIIREIGVETGGSNIQFAVHPLNGDVIVIEMNP 303



 Score = 55.1 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 36/227 (15%), Positives = 81/227 (35%), Gaps = 15/227 (6%)

Query: 68  VQAILELLE--IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQHL 123
           +Q  LE ++       +   +   + D+ R ++++    +    + L   F   +   H 
Sbjct: 652 LQKYLEQVDAQTKIWGTSPDSIDTAEDRERFEKILRDLDIRQAANGLARSFEDALTVAHT 711

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  DQ +   +  +        +LI++++        V  
Sbjct: 712 IGYPVVVRPSYVLGGRAMEIVYSDQELERYMKFAVQVEPEHPILIDKFL---NNAVEVDV 768

Query: 184 DASLDVTEIAVPKSDF-YSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCR 241
           DA  D T   V      +  E    S +S   +P + +     + +++      +A+   
Sbjct: 769 DAIADSTGRVVIGGIMEHIEEAGIHSGDSACSIPYQTLTSAAVETIRQWTVALAKALNVI 828

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           G+    F        V+ LE N +   T     P ++   G    ++
Sbjct: 829 GLMNIQFAV--QGETVYILEANPRASRT----VPFVSKAIGIPLAKI 869


>gi|330992194|ref|ZP_08316142.1| Biotin carboxylase [Gluconacetobacter sp. SXCC-1]
 gi|329760393|gb|EGG76889.1| Biotin carboxylase [Gluconacetobacter sp. SXCC-1]
          Length = 451

 Score = 69.4 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 36/222 (16%), Positives = 75/222 (33%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+      +E   + +      +  +  DK+ +K+ +   GVP  P    
Sbjct: 78  AIHPGYGFLSENADFADAVEAAGLTFIGPTGASIRMMGDKITAKRAMRDAGVPCVPGSDG 137

Query: 111 -ILVNRFTMDS-QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD----LLQSSSWNHGD 164
            +  +   + +    I  P ++K   GG   G+ V++    +         ++       
Sbjct: 138 PLPADMEEVHALAREIGFPVIVKASGGGGGRGMRVVQTPDELTQAVTLTAKEAQQAFGNP 197

Query: 165 QLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            L +E+++     +   V+ D       +           L+          PA  I  D
Sbjct: 198 TLYLERFMQKPRHVEIQVLCDTHGTALWL-----GARDCSLQRRHQKVLEEAPAPGIEPD 252

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
               +      A + IG RG    +FL+        ++E+N 
Sbjct: 253 TIARIGERCAEACRRIGYRGAGTFEFLY--EDGVFAFIEMNT 292


>gi|313633877|gb|EFS00595.1| pyruvate carboxylase [Listeria seeligeri FSL N1-067]
          Length = 1146

 Score = 69.4 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 36/243 (14%), Positives = 82/243 (33%), Gaps = 25/243 (10%)

Query: 35  QIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSM 91
            +D+  ++  +      D     +H  +G   E+       E   I +         +  
Sbjct: 63  YLDI-ENIIEIAKESGAD----AIHPGYGFLSENIEFARRCEQEGIIFVGPKSKHLDMFG 117

Query: 92  DKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK- 146
           DK+++K+     G+PV P     +   +   +       P +IK   GG   G+ V++  
Sbjct: 118 DKIKAKEQALLAGIPVIPGSDGPVAGIKEVEEFGEKNGYPLMIKASLGGGGRGMRVVESK 177

Query: 147 ---DQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSY 202
               +S      ++ +    D++ +E+ V +   +   ++GD   ++  +          
Sbjct: 178 EHVKESFERASSEAKAAFGNDEVYVEKCVMNPKHIEVQILGDTHGNIVHLFERDCSIQRR 237

Query: 203 ELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
             K        V P   I  ++   +   A      +        +FL        +++E
Sbjct: 238 HQK-----VVEVAPCNAITSELRNRICDAAVKLMNNVDYINAGTVEFLV--EGDDFYFIE 290

Query: 262 INV 264
           +N 
Sbjct: 291 VNP 293


>gi|310779987|ref|YP_003968319.1| carbamoyl-phosphate synthase large subunit [Ilyobacter polytropus
           DSM 2926]
 gi|309749310|gb|ADO83971.1| carbamoyl-phosphate synthase large subunit [Ilyobacter polytropus
           DSM 2926]
          Length = 1069

 Score = 69.4 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 39/288 (13%), Positives = 97/288 (33%), Gaps = 32/288 (11%)

Query: 23  ASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ---- 69
             AL+  G +   I         D   +  L    L  +   N++     E  ++Q    
Sbjct: 580 IKALQKMGIETIIINNNPETVSTDFSTADKLYFEPLITEDVMNIIEKEQPEGVVLQFGGQ 639

Query: 70  ------AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQ 121
                   L    +    +       + D+ R + ++    +       V +    ++  
Sbjct: 640 TAIKLANDLAAAGVKIIGTSADKIDEAEDRERFEAMMEKLDIKRPKGRAVWKIEPGIEIA 699

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
           + +  P +++P       G+ +   + ++   L  S   +  + +LI++Y++GIE+    
Sbjct: 700 NSVGYPVLVRPSYVLGGQGMEICHDEYNLVKYLEASFDRDPENPVLIDKYLNGIEIEIDA 759

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGC 240
           + D    +    +   +           +S  V P+  +      ++   A    + +  
Sbjct: 760 ICDGEDVLIPGIMEHLERAGVHS----GDSITVYPSKNLYEGTEVKILDYAKKIAKELEI 815

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
            G+    F+      +++ +E+N +   T     P ++   G    EL
Sbjct: 816 SGMMNIQFI--AFENEIYVIEVNPRSSRT----VPYISKVTGVPMIEL 857



 Score = 63.2 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 56/287 (19%), Positives = 105/287 (36%), Gaps = 35/287 (12%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQID-------VDRSVGL--------------V 45
           G ++E + S   G     AL+  G +V  I+        DR+V                V
Sbjct: 20  GQAAEFDYS---GTQACEALKQEGIEVVLINSNPATIMTDRAVADRIYIEPITIEFVEKV 76

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   +PD     + G    +  V+     IL+   +    + I +     D+   +  + 
Sbjct: 77  IKKERPDSILAGMGGQTALNIAVELYDSGILDKYNVKVIGTPIDSIKRGEDRDLFRDAMK 136

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G P   S +V   +  ++    I  P V++P       G  +    Q +   LL+   
Sbjct: 137 KIGEPTIESKIVENLKDGLEFAAQIGYPLVVRPAYTLGGSGGGIANDPQELEDILLKGLK 196

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   Q+L+E+ + G  E+   V+ D + +   I V   +     +   + +S  V P++
Sbjct: 197 LSRVGQVLVEKSILGWKEVEYEVIRDENGN--CITVCNMENID-PVGIHTGDSIVVAPSQ 253

Query: 219 -IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +    Y+ ++  +      IG  G     F   P S K   +EIN 
Sbjct: 254 TLSDKEYQMLRTSSIKIINEIGVIGGCNVQFALHPKSFKYAIIEINP 300


>gi|254468435|ref|ZP_05081841.1| acetyl-CoA carboxylase, biotin carboxylase [beta proteobacterium
           KB13]
 gi|207087245|gb|EDZ64528.1| acetyl-CoA carboxylase, biotin carboxylase [beta proteobacterium
           KB13]
          Length = 472

 Score = 69.4 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 77/221 (34%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+  + AI     I +            DK+++++ +   GVPV P    
Sbjct: 76  AIHPGYGFLSENPELAAICAKRGIKFIGPESSIIHKMGDKIQARKAMIEAGVPVTPGSDG 135

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGD 164
            I          + I  P ++K   GG   GI     D+ +  +        + ++ + +
Sbjct: 136 NINSVEEAQSLANQIGYPVMLKATNGGGGRGIRRCDNDKELVSNYDRVISEATKAFGNPE 195

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDI 223
             + +  V    +   ++ D+  +   +            K        + P  ++  + 
Sbjct: 196 LFMEKCVVSPKHIEVQILADSHGNAIHLYERDCSIQRRNQKL-----IEIAPSPQLSNEQ 250

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              +  LA  A +A+        +FL D      +++E+N 
Sbjct: 251 RDYIGSLAVKAAKAVNYENAGTVEFLLDQDDN-FYFMEMNT 290


>gi|134277479|ref|ZP_01764194.1| putative lyase [Burkholderia pseudomallei 305]
 gi|134251129|gb|EBA51208.1| putative lyase [Burkholderia pseudomallei 305]
          Length = 900

 Score = 69.4 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 46/234 (19%), Positives = 87/234 (37%), Gaps = 29/234 (12%)

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYVIKP 132
           L +P   +   A     DK R  + +   GV V  + +V+  T   D  H  + P V+KP
Sbjct: 97  LGLP--AADPEAIRTCRDKGRLHRRLRDAGVGVADTEIVSERTQLRDLAHGATYPRVLKP 154

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ-------LLIEQYVDGIELTCGVMGDA 185
             G  S+G+ +++    +     +       ++       +L++ +VDG E +  V+G  
Sbjct: 155 AFGSGSVGVRLVRTPAEMLAHGERMLDARGNERGIALARQVLVQSFVDGPEFSVEVVGLG 214

Query: 186 S---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR- 241
           +     V  +         +      + + H  PA I       +      A  A+G R 
Sbjct: 215 AEHGHAVLGVTGKHLGPLPH-----FVEAGHDFPAPIAAAQRDAIVAETLRALDAVGHRF 269

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA-YAGYSFRELLLWMVE 294
           G +  +        KV  +EIN +       + P+      G    ++L  M++
Sbjct: 270 GPAHVECRV--SGGKVVVIEINPR---LAGGMIPQAIEWATGV---DVLGAMID 315


>gi|68535304|ref|YP_250009.1| phosphoribosylglycinamide formyltransferase 2 [Corynebacterium
           jeikeium K411]
 gi|123775764|sp|Q4JXR6|PURT_CORJK RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|68262903|emb|CAI36391.1| phosphoribosylglycinamide formyltransferase 2 [Corynebacterium
           jeikeium K411]
          Length = 411

 Score = 69.4 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 45/290 (15%), Positives = 92/290 (31%), Gaps = 50/290 (17%)

Query: 19  GKACASALEDAGFKVSQ------------------IDVDRSVGL--VLAHLKPDLAFNVL 58
           G+  A AL+  G +V                    +D+     +  ++  + P       
Sbjct: 27  GRELAIALQRLGIEVHAADRYAGAPAHLVANKAHVLDIHDEDAIRQLVREVGPHFVIPDS 86

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS-CGVPVCPSILVNRFT 117
                E  ++Q I E  E+       LA+ L+M++   +       G+P       +   
Sbjct: 87  ETIPAE--VLQEI-ETNEVASVVPTALANRLTMNREGIRTFAHDKLGLPNSTFRFASTAD 143

Query: 118 M--DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD--LLQSSSWNHGDQLLIEQYVD 173
               +   I  P V+KP+   S  G   +     +          S  +  ++++EQY+ 
Sbjct: 144 ELARAAEEIGYPCVVKPVMSSSGAGQSYVGGVDELEAAWNAALKHSRTNAQRVMVEQYIP 203

Query: 174 GIELTCGVM---------GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             +    ++         G  +    E    + D   Y   +         PA +  D  
Sbjct: 204 -FDYEVTILAVRSIDPATGREATWFCEPIGHRQDRGDYVESW--------QPAHMSEDAL 254

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274
              + +A     A+G RG+   +         V++ E+   P +    + 
Sbjct: 255 DTARSIAARIATALGGRGVYGVELFV--KGDDVYFSEV--SPRLHDTGMV 300


>gi|325123532|gb|ADY83055.1| biotin carboxylase/biotin-containing subunit [Acinetobacter
           calcoaceticus PHEA-2]
          Length = 646

 Score = 69.4 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 35/199 (17%), Positives = 69/199 (34%), Gaps = 16/199 (8%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD----SQHLISPPYVIK 131
           +I +      A  L   K  SK  +   GVP  P    +R  ++        I  P ++K
Sbjct: 100 QITFIGPTASAIELMGSKRLSKIAMIEAGVPCVPGYEGDRQDLEYLATQAEQIGFPIMVK 159

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSS-----SWNHGDQLLIEQYVDGIELTCGVMGDAS 186
              GG   G+ ++++   +   L  +      ++  G+ +L +  +    +   V GD  
Sbjct: 160 ASAGGGGRGMRLVQQASELFEALQTARSEAENAFGSGELILEKAVIAPRHVEIQVFGDTH 219

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISR 245
            +   +            K          P   +   + +++   A  A +A    G   
Sbjct: 220 GNYVYLFERDCSIQRRHQK-----VVEEAPCLVMTPVLRQQMGEAAVAAAKACAYVGAGT 274

Query: 246 SDFLFDPLSRKVFWLEINV 264
            +FL D      ++LE+N 
Sbjct: 275 VEFLLDAS-GAFYFLEMNT 292


>gi|308481313|ref|XP_003102862.1| hypothetical protein CRE_29875 [Caenorhabditis remanei]
 gi|308260948|gb|EFP04901.1| hypothetical protein CRE_29875 [Caenorhabditis remanei]
          Length = 687

 Score = 69.4 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 76/221 (34%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H  +G   E+           + +      A      K  SKQ++    VPV      
Sbjct: 94  AIHPGYGFLSENAGFADRCAQAGLVFIGPPAQAIRDMGAKNVSKQIMEDAKVPVVKGFHG 153

Query: 113 ---VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
               +         I  P ++K + GG   G+ +   +      L  + +        D+
Sbjct: 154 EDQSDANLKKKSQEIGYPVMLKAVYGGGGKGMRIAWNEAEFDEKLASARNEAKKSFGNDE 213

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDI 223
           +L+E++V+    +   V GD   +   +           ++          PA  +  + 
Sbjct: 214 MLVEKFVEKPRHVEVQVFGDHHGNYVHLWE-----RDCSVQRRHQKIIEEAPAPNMAHET 268

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             ++   A  A  A+G  G    +F+ DP   + F++E+N 
Sbjct: 269 RLKLGESAVRAAAAVGYVGAGTVEFIMDPR-GEFFFMEMNT 308


>gi|260428616|ref|ZP_05782595.1| methylcrotonoyl-CoA carboxylase subunit alpha [Citreicella sp.
           SE45]
 gi|260423108|gb|EEX16359.1| methylcrotonoyl-CoA carboxylase subunit alpha [Citreicella sp.
           SE45]
          Length = 652

 Score = 69.4 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 45/225 (20%), Positives = 84/225 (37%), Gaps = 23/225 (10%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      +E   + +   G  A      K  +K+++   GVPV P    
Sbjct: 77  AIHPGYGFLSENPDFVDAVEAAGLIFVGPGAKAIRAMGLKDAAKRLMHEAGVPVVPGYHG 136

Query: 114 N----RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG----DQ 165
                RF       I  P +IK + GG   G+ ++++       L  + +   G    + 
Sbjct: 137 EEQDARFLAGEAEAIGYPVLIKAVAGGGGKGMRLVERPGEFADALKSAQAEARGAFGNEA 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           +LIE++V     +   V GD +  V              L+          PA  +  ++
Sbjct: 197 VLIEKFVSKPRHIEVQVFGDGTNAV------HLFERDCSLQRRHQKVIEEAPAPGMTAEM 250

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR----KVFWLEINV 264
            + +   A  A +AIG +G    +F+ D          +++E+N 
Sbjct: 251 RQAMGAAAVRAAEAIGYKGAGTIEFIVDGSRGLRADGFWFMEMNT 295


>gi|167894228|ref|ZP_02481630.1| argininosuccinate lyase [Burkholderia pseudomallei 7894]
          Length = 336

 Score = 69.4 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 46/234 (19%), Positives = 87/234 (37%), Gaps = 29/234 (12%)

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYVIKP 132
           L +P   +   A     DK R  + +   GV V  + +V+  T   D  H  + P V+KP
Sbjct: 97  LGLP--AADPEAIRTCRDKGRLHRRLRDAGVGVADTEIVSERTQLRDLAHGATYPRVLKP 154

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ-------LLIEQYVDGIELTCGVMGDA 185
             G  S+G+ +++    +     +       ++       +L++ +VDG E +  V+G  
Sbjct: 155 AFGSGSVGVRLVRTPAEMLAHGERMLDARGNERGIALARQVLVQSFVDGPEFSVEVVGLG 214

Query: 186 S---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR- 241
           +     V  +         +      + + H  PA I       +      A  A+G R 
Sbjct: 215 AEHGHAVLGVTGKHLGPLPH-----FVEAGHDFPAPIAAAQRDAIVAETLRALDAVGHRF 269

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA-YAGYSFRELLLWMVE 294
           G +  +        KV  +EIN +       + P+      G    ++L  M++
Sbjct: 270 GPAHVECRV--SGGKVVVIEINPR---LAGGMIPQAIEWATGV---DVLGAMID 315


>gi|116072928|ref|ZP_01470190.1| carbamoyl phosphate synthetase, large subunit [Synechococcus sp.
           RS9916]
 gi|116068233|gb|EAU73985.1| carbamoyl phosphate synthetase, large subunit [Synechococcus sp.
           RS9916]
          Length = 1107

 Score = 69.4 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 57/283 (20%), Positives = 94/283 (33%), Gaps = 44/283 (15%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL   GF+V  +         D +              V  V+   +PD    
Sbjct: 29  SGTQACKALRADGFEVVLVNSNPASIMTDPELADRTYIEPLTPEVVTRVIEQERPDALLP 88

Query: 57  VLHGN--------FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
            + G           E+G     LE   +    + + A   + D+   KQ +   GV VC
Sbjct: 89  TMGGQTALNLAVALAENGT----LERYGVELIGADLPAIQKAEDRQLFKQAMERIGVKVC 144

Query: 109 PSIL---VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
           PS +   +         + + P +I+P       G  +    +            +   Q
Sbjct: 145 PSGIASSMEEAEAVGAAIGTFPRIIRPAFTLGGSGGGIAYNPEEYAAICKSGLEASPVSQ 204

Query: 166 LLIEQYVDG-IELTCGVMGDASL-DVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
           +LIEQ + G  E    VM D     V   ++   D           +S  V PA+ +   
Sbjct: 205 ILIEQSLLGWKEFELEVMRDQVDNVVIVCSIENLDPMGVHT----GDSITVAPAQTLTDR 260

Query: 223 IYKEVQRLAFLAHQAIG-CRGISRSDFLFDPLSRKVFWLEINV 264
            Y+ ++  +    + IG   G S   F  +P    V  +E+N 
Sbjct: 261 EYQRLRDQSIAIIREIGVATGGSNIQFAINPDDGDVVVIEMNP 303



 Score = 49.0 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/219 (13%), Positives = 76/219 (34%), Gaps = 14/219 (6%)

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--QHLISPPYVIKPLKGGSS 138
            +   +   + D+ + + ++    +    + L             +  P V++P      
Sbjct: 687 GTSPESIDRAEDREQFEAILRELEIRQPRNGLARSEEEARSVAERVGYPVVVRPSYVLGG 746

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKS 197
             + V+  +Q +   ++++        +LI+QY++  +E+    + D    V    + + 
Sbjct: 747 RAMEVVFDEQELNRYMVEAVQVEPDHPVLIDQYLENAVEVDVDALCDRENTVLVGGLME- 805

Query: 198 DFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF--DPLS 254
             +       S +S   LPA  +       ++R       A+  +G+    F    D   
Sbjct: 806 --HIEPAGIHSGDSACCLPAVSLGEQALGLIRRWTEALAVALKVQGLINLQFAVQRDASG 863

Query: 255 RKV-FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
            ++ + +E N +   T     P +A   G     +   +
Sbjct: 864 EEIVYIIEANPRASRT----VPFVAKATGVPLARIATRL 898


>gi|126454180|ref|YP_001066287.1| argininosuccinate lyase [Burkholderia pseudomallei 1106a]
 gi|217421917|ref|ZP_03453421.1| putative lyase [Burkholderia pseudomallei 576]
 gi|242317593|ref|ZP_04816609.1| putative lyase [Burkholderia pseudomallei 1106b]
 gi|254197537|ref|ZP_04903959.1| Argininosuccinate lyase 2 (Arginosuccinase 2) (ASAL 2)
           [Burkholderia pseudomallei S13]
 gi|126227822|gb|ABN91362.1| putative lyase [Burkholderia pseudomallei 1106a]
 gi|169654278|gb|EDS86971.1| Argininosuccinate lyase 2 (Arginosuccinase 2) (ASAL 2)
           [Burkholderia pseudomallei S13]
 gi|217395659|gb|EEC35677.1| putative lyase [Burkholderia pseudomallei 576]
 gi|242140832|gb|EES27234.1| putative lyase [Burkholderia pseudomallei 1106b]
          Length = 900

 Score = 69.4 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 46/234 (19%), Positives = 87/234 (37%), Gaps = 29/234 (12%)

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYVIKP 132
           L +P   +   A     DK R  + +   GV V  + +V+  T   D  H  + P V+KP
Sbjct: 97  LGLP--AADPEAIRTCRDKGRLHRRLRDAGVGVADTEIVSERTQLRDLAHGATYPRVLKP 154

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ-------LLIEQYVDGIELTCGVMGDA 185
             G  S+G+ +++    +     +       ++       +L++ +VDG E +  V+G  
Sbjct: 155 AFGSGSVGVRLVRTPAEMLAHGERMLDARGNERGIALARQVLVQSFVDGPEFSVEVVGLG 214

Query: 186 S---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR- 241
           +     V  +         +      + + H  PA I       +      A  A+G R 
Sbjct: 215 AEHGHAVLGVTGKHLGPLPH-----FVEAGHDFPAPIAAAQRDAIVAETLRALDAVGHRF 269

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA-YAGYSFRELLLWMVE 294
           G +  +        KV  +EIN +       + P+      G    ++L  M++
Sbjct: 270 GPAHVECRV--SGGKVVVIEINPR---LAGGMIPQAIEWATGV---DVLGAMID 315


>gi|289434329|ref|YP_003464201.1| hypothetical protein lse_0962 [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
 gi|289170573|emb|CBH27113.1| pycA [Listeria seeligeri serovar 1/2b str. SLCC3954]
          Length = 1146

 Score = 69.4 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 36/243 (14%), Positives = 82/243 (33%), Gaps = 25/243 (10%)

Query: 35  QIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSM 91
            +D+  ++  +      D     +H  +G   E+       E   I +         +  
Sbjct: 63  YLDI-ENIIEIAKESGAD----AIHPGYGFLSENIEFARRCEQEGIIFVGPKSKHLDMFG 117

Query: 92  DKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK- 146
           DK+++K+     G+PV P     +   +   +       P +IK   GG   G+ V++  
Sbjct: 118 DKIKAKEQALLAGIPVIPGSDGPVAGIKEVEEFGEKNGYPLMIKASLGGGGRGMRVVESK 177

Query: 147 ---DQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSY 202
               +S      ++ +    D++ +E+ V +   +   ++GD   ++  +          
Sbjct: 178 EHVKESFERASSEAKAAFGNDEVYVEKCVMNPKHIEVQILGDTHGNIVHLFERDCSIQRR 237

Query: 203 ELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
             K        V P   I  ++   +   A      +        +FL        +++E
Sbjct: 238 HQK-----VVEVAPCNAITSELRNRICDAAVKLMNNVDYINAGTVEFLV--EGDDFYFIE 290

Query: 262 INV 264
           +N 
Sbjct: 291 VNP 293


>gi|53719329|ref|YP_108315.1| argininosuccinate lyase [Burkholderia pseudomallei K96243]
 gi|52209743|emb|CAH35714.1| putative bifunctional protein (ligase and argininosuccinate lyase)
           [Burkholderia pseudomallei K96243]
          Length = 894

 Score = 69.4 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 46/234 (19%), Positives = 87/234 (37%), Gaps = 29/234 (12%)

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYVIKP 132
           L +P   +   A     DK R  + +   GV V  + +V+  T   D  H  + P V+KP
Sbjct: 91  LGLP--AADPEAIRTCRDKGRLHRRLRDAGVGVADTEIVSERTQLRDLAHGAAYPRVLKP 148

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ-------LLIEQYVDGIELTCGVMGDA 185
             G  S+G+ +++    +     +       ++       +L++ +VDG E +  V+G  
Sbjct: 149 AFGSGSVGVRLVRTPAEMLAHGERMLDARGNERGIALARQVLVQSFVDGPEFSVEVVGLG 208

Query: 186 S---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR- 241
           +     V  +         +      + + H  PA I       +      A  A+G R 
Sbjct: 209 AEHGHAVLGVTGKHLGPLPH-----FVEAGHDFPAPIAAAQRDAIVAETLRALDAVGHRF 263

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA-YAGYSFRELLLWMVE 294
           G +  +        KV  +EIN +       + P+      G    ++L  M++
Sbjct: 264 GPAHVECRV--SGGKVVVIEINPR---LAGGMIPQAIEWATGV---DVLGAMID 309


>gi|210610312|ref|ZP_03288341.1| hypothetical protein CLONEX_00531 [Clostridium nexile DSM 1787]
 gi|210152542|gb|EEA83548.1| hypothetical protein CLONEX_00531 [Clostridium nexile DSM 1787]
          Length = 1057

 Score = 69.4 bits (169), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 50/269 (18%), Positives = 103/269 (38%), Gaps = 32/269 (11%)

Query: 25  ALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFNVLHGNFG 63
           AL++ G++V   + + +                     V  ++ + +PD     + G  G
Sbjct: 36  ALKEEGYEVVLCNSNPATIMTDTSIADKVYMEPLTLEYVAKIVRYERPDAILPGIGGQTG 95

Query: 64  EDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT-- 117
            +  +Q     IL         + I +   + D+   K++    G PV PS + +     
Sbjct: 96  LNLAMQLEKKGILAECRTELLGTKISSIERAEDRELFKELCEELGEPVLPSDIASSIEEG 155

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IE 176
           +     I  P V++P       G      ++ +   +  + S +   Q+LIE+ + G  E
Sbjct: 156 LKVAEKIGYPLVLRPAFTLGGTGGGFADNEEELVALMKNALSLSPVHQVLIEKSIKGYKE 215

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAH 235
           +   VM D++     I     +     +   + +S  V P++ +    Y+ ++  A    
Sbjct: 216 IEYEVMRDSNDTAITIC--NMENLD-PVGIHTGDSIVVCPSQTLTNKEYQMLRYSALKII 272

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +A+G  G     F  DP S + + +E+N 
Sbjct: 273 RALGIEGGCNVQFALDPHSFQYYLIEVNP 301



 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 48/308 (15%), Positives = 111/308 (36%), Gaps = 42/308 (13%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNV 57
           G   E + S  +  A    ++ AG++   I         D   S  L    L  +   N+
Sbjct: 562 GQGVEFDYS--TVHAV-QTIQSAGYEAIIINNNPETVSTDYTCSDKLYFEPLCVEDVMNI 618

Query: 58  LHGNFGEDGLVQAI-----------LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP 106
           +      DG++  +           L    +    +   A   + ++   +++++S  +P
Sbjct: 619 IE-LEQPDGVIATLGGQTAINLAEPLRARGVNIIGTDCDAIERAENRDSFEKLLASLHIP 677

Query: 107 VCPSILVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164
                 V      + + + I  P +++P        + ++ K++++   L  +   N   
Sbjct: 678 QPKGQAVTSIEDGIRAANEIGYPVLVRPSFVLGGRAMQIVAKEEALRNYLKTAVEINEEK 737

Query: 165 QLLIEQYVDGIELTCGVMGDAS---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IP 220
            +L+++Y+ G E+    + D     +      V ++  +S        +S  + P   I 
Sbjct: 738 PVLVDKYIRGKEVEVDAVCDGKNVFVPGIMELVERTGVHS-------GDSISIYPTHSIS 790

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280
             + + +          IG  G+    F+ D     V+ +E+N +   T     P ++  
Sbjct: 791 EKVKETILDYTQKLGLGIGIIGLFNIQFIVDEFEN-VYIIEVNPRSSRT----VPFLSKA 845

Query: 281 AGYSFREL 288
            GYS  ++
Sbjct: 846 TGYSLADI 853


>gi|121534866|ref|ZP_01666685.1| cyanophycin synthetase [Thermosinus carboxydivorans Nor1]
 gi|121306465|gb|EAX47388.1| cyanophycin synthetase [Thermosinus carboxydivorans Nor1]
          Length = 885

 Score = 69.4 bits (169), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 23/106 (21%), Positives = 50/106 (47%), Gaps = 5/106 (4%)

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRF--TMDSQHLISPPYVIKPLKGGSSLGIIV-IK 145
           L+ DK  +KQV+++ G+ V   ++V      + +      P V+KPL+G    G+ + + 
Sbjct: 211 LASDKHLTKQVLAAGGITVPQGVIVTAAGQAVKAWEQFGAPVVLKPLRGNQGKGVTLNVH 270

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
               +      +++  H  ++L+E+Y+ G +    V+    +   E
Sbjct: 271 SAAEVERAFAFAAA--HDREVLVEEYIPGRQYRLCVVNGKMVAAAE 314


>gi|169847015|ref|XP_001830220.1| carbamoyl-phosphate synthase subunit arginine-specific large
           [Coprinopsis cinerea okayama7#130]
 gi|116508696|gb|EAU91591.1| carbamoyl-phosphate synthase subunit arginine-specific large
           [Coprinopsis cinerea okayama7#130]
          Length = 1157

 Score = 69.4 bits (169), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 65/321 (20%), Positives = 117/321 (36%), Gaps = 47/321 (14%)

Query: 6   GGIS----SEREVSLSSGKACASALEDAGF--------------------KVSQIDVDRS 41
           GG+S     E + S   G     AL + G                     +V  + +   
Sbjct: 88  GGLSIGQAGEFDYS---GSQALKALNEEGVSAVLINPNIATWQTSHQLASEVYFLPITAD 144

Query: 42  -VGLVLAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRS 96
            V  VL   +PD       G    +  +      IL+ L +    + I    +S D+   
Sbjct: 145 YVAYVLEKERPDGILLTFGGQSALNVGIALDRMGILDRLGVKVLGTPIRTLEVSEDRDLF 204

Query: 97  KQVVSSCGVPVCPSILVNR--FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154
            Q +    +PV  S  V+     +++   I  P +++       LG       + +    
Sbjct: 205 VQALKEIDIPVATSTAVSSVPAALEAAEQIGYPVILRSAFTLGGLGSGFANNPEELS--N 262

Query: 155 LQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASL-DVTEIAVPKSDFYSYELKYSSLNST 212
           L + S +   Q+LIE+ + G  EL   V+ DA+   +    +   D           +S 
Sbjct: 263 LAAKSLSLSPQVLIERSMKGWKELEYEVVRDAADNTIICCNMENFDPLGTHT----GDSI 318

Query: 213 HVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271
            V P++ +P D Y  ++  A  A + +G  G     +  +P SR+   +E+N +   +  
Sbjct: 319 VVAPSQTLPDDEYHMLRSAALKAIRHLGVVGECNIQYALNPTSREYCVIEVNARALASKA 378

Query: 272 SIFPEMAAYA----GYSFREL 288
           + +P     A    GY+  EL
Sbjct: 379 TGYPLAYTAAKIALGYTLPEL 399


>gi|83749309|ref|ZP_00946307.1| Methylcrotonyl-CoA carboxylase biotin-containing subunit [Ralstonia
           solanacearum UW551]
 gi|83724040|gb|EAP71220.1| Methylcrotonyl-CoA carboxylase biotin-containing subunit [Ralstonia
           solanacearum UW551]
          Length = 674

 Score = 69.4 bits (169), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 41/221 (18%), Positives = 79/221 (35%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+           + +      A      K  +K ++   GVP+ P    
Sbjct: 77  AIHPGYGFLSENETFARACAEAGLVFVGPPASAIEAMGSKSAAKALMERAGVPLVPGYHG 136

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
           +             I  P +IK   GG   G+ V++  ++    L     ++SS    D+
Sbjct: 137 DNQDAAFLRAQADRIGYPVLIKASAGGGGKGMRVVEAGEAFEAALASVKREASSSFGDDR 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           +LIE+Y+     +   V  D   +   +           ++          PA  + LD 
Sbjct: 197 VLIEKYLTRPRHIEIQVFADGFGNAVYL-----FERDCSVQRRHQKVLEEAPAPGMTLDR 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +   A  A +A+G  G    +F+ D      +++E+N 
Sbjct: 252 RRAMGEAAVAAARAVGYVGAGTVEFIVDE-DGTFYFMEMNT 291


>gi|310765119|gb|ADP10069.1| carbamoyl phosphate synthase large subunit [Erwinia sp. Ejp617]
          Length = 1084

 Score = 69.4 bits (169), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 49/319 (15%), Positives = 110/319 (34%), Gaps = 52/319 (16%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D +              V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +    Q +L    +    +   A   + D+ R  + +   G+    S +
Sbjct: 89  TMGGQTALNCALELERQGVLAEFGVTMIGATADAIDKAEDRQRFDKAMKKIGLDTARSGI 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     +     +  P +I+P       G  +    +       +    +  ++LLI++
Sbjct: 149 AHTMEEALAVAADVGFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTNELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + +   +   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIEN----FDAMGIHTGDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV-----------QPGMTPVSIFP 275
           +  +    + IG   G S   F  +P + ++  +E+N              G        
Sbjct: 265 RNASMAVLREIGVETGGSNVQFSVNPENGRLIIIEMNPRVSRSSALASKATGF----PIA 320

Query: 276 EMAA--YAGYSFRELLLWM 292
           ++AA    GY+  EL+  +
Sbjct: 321 KIAAKLAVGYTLDELMNDI 339



 Score = 65.5 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 85/221 (38%), Gaps = 14/221 (6%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYV 129
           LE   +P   +   A   + D+ R +Q V   G+    +  V    M  +   +I  P V
Sbjct: 654 LEAAGVPVIGTSPDAIDRAEDRERFQQAVERLGLKQPANATVTAIDMAVEKAAMIGYPLV 713

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  +  +      + S ++   +L+++++ D +E+    + D    
Sbjct: 714 VRPSYVLGGRAMEIVYDEIDLKRYFNTAVSVSNDAPVLLDRFLDDAVEVDVDAICDGEQV 773

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           +    +   +    +    S +S   LPA  +  +I   +++        +G RG+    
Sbjct: 774 LIGGIMEHIE----QAGVHSGDSACSLPAYTLSAEIQNVMRQQVEKLAFELGVRGLMNVQ 829

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           F       +V+ +E+N +   T     P ++   G    ++
Sbjct: 830 FAV--KDNEVYLIEVNPRAART----VPFVSKATGMPLAKV 864


>gi|163757729|ref|ZP_02164818.1| RimK-like ATP-grasp [Hoeflea phototrophica DFL-43]
 gi|162285231|gb|EDQ35513.1| RimK-like ATP-grasp [Hoeflea phototrophica DFL-43]
          Length = 485

 Score = 69.4 bits (169), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 32/192 (16%), Positives = 69/192 (35%), Gaps = 18/192 (9%)

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTMDSQHLISPPYVIKPLKGGSSLG 140
             ++     +K+   +++++ G+PV P++++        +   +  P V+K      S G
Sbjct: 275 DPVSMIRCTNKVYLDELMAANGIPVPPTVMLIGPEDFQRAADQLGFPMVLKVPDSSFSRG 334

Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY--VDGIELTCGVMGDASLDVTEIAVPKSD 198
           +  +   + +      + +W    ++LI Q       +   GV+G   L   +  + K  
Sbjct: 335 VSKVGSMEELR---KLAGAWLADSEVLIAQAYMPTSFDWRIGVLGGKPLFAVQYLMAKKH 391

Query: 199 F----YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
           +    +    K           A++P      V      A ++IG       D       
Sbjct: 392 WQIVKHDTGGKPLEGGFKPFTLAQVPP----LVLDTGLRAARSIGDGFYG-VD--LKETD 444

Query: 255 RKVFWLEINVQP 266
             VF +E+N  P
Sbjct: 445 DGVFVIEVNDNP 456


>gi|308179681|ref|YP_003923809.1| acetyl-CoA carboxylase subunit A [Lactobacillus plantarum subsp.
           plantarum ST-III]
 gi|308045172|gb|ADN97715.1| acetyl-CoA carboxylase subunit A [Lactobacillus plantarum subsp.
           plantarum ST-III]
          Length = 440

 Score = 69.4 bits (169), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 41/226 (18%), Positives = 76/226 (33%), Gaps = 31/226 (13%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+    A+     I +         L  DK R+K       VPV     +
Sbjct: 77  AIHPGYGFLAENADFAAMCAECGIAWIGPQTEQIKLMGDKARAKDFARQQAVPVLAGQSL 136

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
                     +   I  P V+K   GG   GI V+     +   L     ++++    D 
Sbjct: 137 QGLAWPDIKHAAAKIGFPLVLKASYGGGGKGIRVLTDVHELHQQLRATRQEAAASFLNDA 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +EQ++     +   V+G  +                 L+          PA I  +  
Sbjct: 197 MYLEQFLTTARHIEVQVLGTGTKLFIL------GDRDCSLQLHKQKVLEESPASILTETQ 250

Query: 225 KEV------QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +        Q LA   +Q++G       ++LF     + +++E+N 
Sbjct: 251 RRTLYDLSRQLLAGTHYQSLGT-----IEYLF--ADGQFYFMEMNT 289


>gi|194290080|ref|YP_002005987.1| carbamoyl phosphate synthase large subunit [Cupriavidus taiwanensis
           LMG 19424]
 gi|193223915|emb|CAQ69924.1| Carbamoyl-phosphate synthase large chain (Carbamoyl-phosphate
           synthetase ammonia chain) [Cupriavidus taiwanensis LMG
           19424]
          Length = 1082

 Score = 69.4 bits (169), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 27/198 (13%), Positives = 73/198 (36%), Gaps = 8/198 (4%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYV 129
           LE   +P   +       + D+ R ++++   G+   P+               I  P V
Sbjct: 658 LERNGVPIIGTSPDMIDAAEDRERFQKLLQDLGLRQPPNRTARAEDEALRLAEEIGYPLV 717

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++ + + +   + ++   ++   +L+++++ D IE     + D    
Sbjct: 718 VRPSYVLGGRAMEIVHEPRDLERYMREAVKVSNDSPVLLDRFLNDAIECDVDALCDGKRV 777

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                +   +       +S  ++  + P  +  +   E++R      +A+   G+    F
Sbjct: 778 FIGGVMEHIEQAGV---HSGDSACSLPPYSLSAETVAELKRQTAAMAKALNVVGLMNVQF 834

Query: 249 LFDPLSR--KVFWLEINV 264
                +    V+ LE+N 
Sbjct: 835 AIQQNNGVDTVYVLEVNP 852



 Score = 61.7 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 49/285 (17%), Positives = 94/285 (32%), Gaps = 42/285 (14%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + GFKV  +              DV          V  ++   +PD    
Sbjct: 29  SGAQACKALREEGFKVILVNSNPATIMTDPATADVTYIEPITWEVVERIIEKERPDAILP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G    +  +      +L+  ++    +   A   + D+ + K  ++  G+    S  
Sbjct: 89  TMGGQTALNCALDLHRHGVLDKYKVELIGASPEAIDKAEDRQKFKDAMTKIGLGSAKSGI 148

Query: 111 -------ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
                  + V             P VI+P       G  +    +       +    +  
Sbjct: 149 AHSMDEAVAVQARIAQDTGTSGYPIVIRPSFTLGGTGGGIAYNREEFEEICKRGLDLSPT 208

Query: 164 DQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPAK-IP 220
            +LLIE+ + G  E    V+ D   +   I   ++ D           +S  V PA+ + 
Sbjct: 209 RELLIEESLLGWKEYEMEVVRDKQDNCIIICSIENLDPMGIHT----GDSITVAPAQTLT 264

Query: 221 LDIYKEVQRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
              Y+ ++  +    + IG   G S   F  +P   ++  +E+N 
Sbjct: 265 DKEYQILRNASLAVLREIGVDTGGSNVQFSINPKDGRMIVIEMNP 309


>gi|330963428|gb|EGH63688.1| acetyl-CoA carboxylase biotin carboxylase subunit [Pseudomonas
           syringae pv. actinidiae str. M302091]
          Length = 331

 Score = 69.4 bits (169), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 76/222 (34%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         L  DK+ +K  +    VP  P    
Sbjct: 77  AIHPGYGFLAENADFAEQVEKSGFAFIGPKADTIRLMGDKVSAKDAMKLANVPTVPGSDG 136

Query: 112 LVNRFTMDSQHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPL----DLLQSSSWNHGD 164
            +      +  +   +  P +IK   GG   G+ V+ +++ +         ++++W    
Sbjct: 137 PLPEDETIALRIGREVGYPVIIKAAGGGGGRGMRVVHREEDLIEAAAQTRAEAAAWFSNP 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+Y+     +   V+ D                   L+          PA  I   
Sbjct: 197 MVYLEKYLTNPRHVEVQVISDGQGQAI-----HLGDRDCSLQRRHQKVLEEAPAPFIDEQ 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              +V      A   IG RG    +FL+   + + +++E+N 
Sbjct: 252 ARADVLAACVKACIDIGYRGAGTFEFLY--ENGRFYFIEMNT 291


>gi|323485581|ref|ZP_08090925.1| hypothetical protein HMPREF9474_02676 [Clostridium symbiosum
           WAL-14163]
 gi|323692929|ref|ZP_08107151.1| carbamoyl-phosphate synthase [Clostridium symbiosum WAL-14673]
 gi|323401099|gb|EGA93453.1| hypothetical protein HMPREF9474_02676 [Clostridium symbiosum
           WAL-14163]
 gi|323503012|gb|EGB18852.1| carbamoyl-phosphate synthase [Clostridium symbiosum WAL-14673]
          Length = 1070

 Score = 69.4 bits (169), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 46/276 (16%), Positives = 101/276 (36%), Gaps = 32/276 (11%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G+++  +              DV          +  ++   +PD    
Sbjct: 28  SGTQACKALKNLGYEIVLVNSNPATIMTDPETADVTYIEPLNVERLTQIIDKERPDALLP 87

Query: 57  VLHGNFGEDGL----VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G  G +         +L+   +      + A     D++  K  + S G+ +  S +
Sbjct: 88  NLGGQSGLNLCSELAAAGVLDKYNVKVIGVQVDAIERGEDRIEFKHAMESLGIEMARSEV 147

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  ++    +  P V++P       G  ++   + +     +    +   Q+L+E+
Sbjct: 148 AYTVEHALEIADKLGYPVVLRPAYTMGGEGGGLVYNVEELKTVCARGLQASMVGQVLVEE 207

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQ 228
            + G  EL   V+ DA  ++  +   ++      L   + +S    P   I  ++ K +Q
Sbjct: 208 SILGWEELELEVVRDAKNNMITVCFIEN---IDPLGVHTGDSFCSAPMLTISEEVQKRLQ 264

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             ++   +AI   G +   +  DP + +   +EIN 
Sbjct: 265 EKSYKIVEAIEVIGGTNVQWAHDPKTDRDIVIEINP 300



 Score = 58.6 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 38/263 (14%), Positives = 94/263 (35%), Gaps = 29/263 (11%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH-----GNFGEDG---- 66
           AL++ GF+   +         D D S  L    L  +   ++ H     G   + G    
Sbjct: 579 ALKELGFETIIVNCNPETVSTDYDTSDKLYFEPLTLEDVLSIYHKEKPLGVIAQFGGQTP 638

Query: 67  -LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-ILVN-RFTMDSQHL 123
             + A L+   +    +      ++ D+   + ++    +P+  S + VN    +   + 
Sbjct: 639 LNLAADLKKYGVTILGTTPETIDMAEDRDLFRDMMDKLQIPMPESGMAVNVDEALVIANR 698

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVM 182
           I  P +++P       G+ V+  D+++   + ++        +LI++++    E     +
Sbjct: 699 IGYPVMVRPSYVLGGRGMEVVHDDEALTYYMKEAVGVTPDRPILIDRFLHHATECEADAI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCR 241
            D         +   +           +S  +LP++ +  D    ++       + +   
Sbjct: 759 SDGENVFVPAVMEHIELAGIHS----GDSACILPSRNLTKDQVDTIRDYTSRIAKEMHVV 814

Query: 242 GISRSDFLFDPLSRKVFWLEINV 264
           G+   +  +     +V+ LE N 
Sbjct: 815 GL--MNMQYAIEDGEVYVLEANP 835


>gi|310658199|ref|YP_003935920.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Clostridium
           sticklandii DSM 519]
 gi|308824977|emb|CBH21015.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Clostridium
           sticklandii]
          Length = 448

 Score = 69.4 bits (169), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 78/221 (35%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  FG   E+     + E   + +            DK R+K+++ +  +PV P    
Sbjct: 77  AIHPGFGFLSENAKFAKMCEECNLTFIGPSWQTINKMGDKSRAKEMMKAQKIPVIPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS-----SWNHGD 164
            +          + I  P +IK   GG   G+ +   ++        ++     ++   D
Sbjct: 137 IVKEISEGHKIANDIGYPVMIKAAAGGGGKGMRMATSEKDFENAFKNAATEAKNAFG-DD 195

Query: 165 QLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            L IE+ + +   +   ++ D   +V  +            + +           I  ++
Sbjct: 196 GLYIEKVIVNPKHVEVQLLADKFGNVIHLGERDCSV----QRKNQKMVEEAPCIVISDEL 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +   A  A +A+G       +FL D      +++E+N 
Sbjct: 252 REAIGNDAVAAAKAVGYENAGTIEFLLDK-DGNYYFMEMNT 291


>gi|167845660|ref|ZP_02471168.1| argininosuccinate lyase [Burkholderia pseudomallei B7210]
          Length = 850

 Score = 69.4 bits (169), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 46/234 (19%), Positives = 87/234 (37%), Gaps = 29/234 (12%)

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYVIKP 132
           L +P   +   A     DK R  + +   GV V  + +V+  T   D  H  + P V+KP
Sbjct: 97  LGLP--AADPEAIRTCRDKGRLHRRLRDAGVGVADTEIVSERTQLRDLAHGATYPRVLKP 154

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ-------LLIEQYVDGIELTCGVMGDA 185
             G  S+G+ +++    +     +       ++       +L++ +VDG E +  V+G  
Sbjct: 155 AFGSGSVGVRLVRTPAEMLAHGERMLDARGNERGIALARQVLVQSFVDGPEFSVEVVGLG 214

Query: 186 S---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR- 241
           +     V  +         +      + + H  PA I       +      A  A+G R 
Sbjct: 215 AEHGHAVLGVTGKHLGPLPH-----FVEAGHDFPAPIAAAQRDAIVAETLRALDAVGHRF 269

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA-YAGYSFRELLLWMVE 294
           G +  +        KV  +EIN +       + P+      G    ++L  M++
Sbjct: 270 GPAHVECRV--SGGKVVVIEINPR---LAGGMIPQAIEWATGV---DVLGAMID 315


>gi|119952469|ref|YP_949947.1| pyruvate carboxylase [Arthrobacter aurescens TC1]
 gi|119951599|gb|ABM10509.1| Pyruvate carboxylase [Arthrobacter aurescens TC1]
          Length = 1126

 Score = 69.4 bits (169), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 38/246 (15%), Positives = 76/246 (30%), Gaps = 16/246 (6%)

Query: 28  DAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87
           + G  V        +         D  +   +G   E+  +        + +        
Sbjct: 53  ERGHPVRAYLDPELIVGTAVAAGADAIYPG-YGFLSENPELAETCAAAGLAFIGPSSDVL 111

Query: 88  ALSMDKMRSKQVVSSCGVPVCPSILVNRFT---MDSQHLISPPYVIKPLKGGSSLGIIVI 144
            L+ +K R+     + GVP   SI  +      + +   +  P  +K + GG   G+  +
Sbjct: 112 TLTGNKARAIAAARAAGVPTLASIYPSTDVDVLIAAARDLRYPLFVKAVAGGGGRGMRRV 171

Query: 145 KKDQSIPLDLL----QSSSWNHGDQLLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDF 199
                +   L     ++        + IEQ  V    +   ++ D   +V  +       
Sbjct: 172 DNPDDLRDALETCMREAEGAFGDPTVFIEQAVVTPRHIEVQILADGEGNVVHLY-----D 226

Query: 200 YSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
               ++        + PA  +   +   +   A    + IG       +FL DP    VF
Sbjct: 227 RDCSVQRRHQKVVEIAPAPNLDSALRDRMCADAVRFAREIGYVNAGTVEFLLDPEGNYVF 286

Query: 259 WLEINV 264
             E+N 
Sbjct: 287 I-EMNP 291


>gi|152996993|ref|YP_001341828.1| acetyl-CoA carboxylase, biotin carboxylase [Marinomonas sp. MWYL1]
 gi|150837917|gb|ABR71893.1| acetyl-CoA carboxylase, biotin carboxylase [Marinomonas sp. MWYL1]
          Length = 446

 Score = 69.4 bits (169), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 34/222 (15%), Positives = 76/222 (34%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         L  DK+ + + +   GVP  P    
Sbjct: 77  AIHPGYGFLAENADFAEQVERSGFTFIGPKAETIRLMGDKVSAIKAMKEAGVPTVPGSNG 136

Query: 112 ---LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
                    +   + I  P ++K   GG   G+ V+  + S+   +     ++ S+    
Sbjct: 137 PVPSDPEECIRIANEIGFPIIVKAAAGGGGRGMRVVHNEGSLLKSISITQSEAGSYFGDS 196

Query: 165 QLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+++ +   +   V+ D   +   +           L+          PA  +  +
Sbjct: 197 TVYMEKFLQNPRHVEVQVLADGQGNAVHLY-----DRDCSLQRRHQKVLEEAPAPMLNEE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +   +    A   I  RG    +FL+       +++E+N 
Sbjct: 252 SRQACLKACVDACIKINYRGAGTFEFLY--EDGNFYFIEMNT 291


>gi|293400959|ref|ZP_06645104.1| carbamoyl-phosphate synthase, large subunit [Erysipelotrichaceae
           bacterium 5_2_54FAA]
 gi|291305985|gb|EFE47229.1| carbamoyl-phosphate synthase, large subunit [Erysipelotrichaceae
           bacterium 5_2_54FAA]
          Length = 1066

 Score = 69.4 bits (169), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 30/225 (13%), Positives = 78/225 (34%), Gaps = 18/225 (8%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVC--PSILVNRFTMDSQHLISPPYVIKPL 133
            +    + +     + D+   ++++    +P     + +     +   + I  P +++P 
Sbjct: 650 GVKILGTSLENIDRAEDRHEFEEMLHKLDIPQPMGETAVTVEEALVIANKIGYPVLVRPS 709

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSW-NHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192
                  + ++  D  + + +  +    +H   +L+++Y+ G E+    + D        
Sbjct: 710 YVLGGRAMEIVHNDDDLKIYMATAVKEISHDAPILVDKYIVGKEMEIDAICDGEHVYIPG 769

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
            +   +           +S  V PA      +   +   A    +     G+    F+ D
Sbjct: 770 IMEHIERAGVHS----GDSISVYPAPTASQQVKDTIIDYAIRIGKGFHFIGLYNIQFIVD 825

Query: 252 PLSRKVFWLEIN-----VQPGMTPVSIFPEMAAYA----GYSFRE 287
               KV+ LE+N       P ++ ++  P          G+S +E
Sbjct: 826 -RDEKVYVLEVNPRSSRTVPFLSKITGVPMSYVATRCVLGHSLKE 869



 Score = 54.4 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 53/287 (18%), Positives = 104/287 (36%), Gaps = 35/287 (12%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQID------------VDRSVGLVLA------- 47
           G ++E + +   G    ++L + G++V  I+             DR     L        
Sbjct: 21  GQAAEFDYA---GTQACTSLREEGYEVVLINSNPATIMTDSVIADRVYIEPLTLEFASRI 77

Query: 48  --HLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
               +PD     L G  G + +V+     IL+   +    + + A   + D+ + ++++ 
Sbjct: 78  IYKERPDAILGSLGGQTGLNLVVELAESGILDEYHVEVLGTALDAIEKAEDRDKFRELMY 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G PV  S++V+     +        P V++P       G      +  +         
Sbjct: 138 EIGEPVPESVIVHTIEEAVAFASDNGYPVVVRPAFTLGGTGGGFAHSEAELRTICDNGLK 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   Q LIEQ + G  E+   VM D + +   I V   +     +   + +S  V P +
Sbjct: 198 ISPVHQCLIEQSIAGYKEIEYEVMRDNADNA--IVVCNMENVD-PVGIHTGDSIVVAPTQ 254

Query: 219 -IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +       ++  A    +A+   G        DP S K + +E+N 
Sbjct: 255 TLTDRECGIMRASALKIIRALKICGGCNVQLALDPNSFKYYVIEVNP 301


>gi|229543897|ref|ZP_04432956.1| acetyl-CoA carboxylase, biotin carboxylase [Bacillus coagulans
           36D1]
 gi|229325036|gb|EEN90712.1| acetyl-CoA carboxylase, biotin carboxylase [Bacillus coagulans
           36D1]
          Length = 449

 Score = 69.4 bits (169), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 82/221 (37%), Gaps = 18/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     +     I +      A A    K  +++ +   GVP+ P    
Sbjct: 77  AIHPGYGFLAENADFAELCRECNIEFIGPSPEAIAKMGAKDVARETMKKAGVPIVPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGD 164
            +            I  P +IK   GG   GI V   ++ +   +       ++++    
Sbjct: 137 LVKDAEEAKVVAKKIGYPVIIKATAGGGGKGIRVALNEEELVKGIHITQQEAATAFG-NP 195

Query: 165 QLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            + +E+Y++    +   VM D   +V  +            K             +  ++
Sbjct: 196 GVYLEKYIEDFRHVEIQVMADKFGNVIHLGERDCTIQRRLQKLL----EESPSPALSSEM 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +E+ + A  A +A+   G    +F+FD  ++K +++E+N 
Sbjct: 252 REEMGQAAVKAAKAVDYTGAGTIEFIFDHRNQKFYFMEMNT 292


>gi|160901140|ref|YP_001566722.1| cyanophycin synthetase [Delftia acidovorans SPH-1]
 gi|160366724|gb|ABX38337.1| cyanophycin synthetase [Delftia acidovorans SPH-1]
          Length = 730

 Score = 69.4 bits (169), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 46/250 (18%), Positives = 87/250 (34%), Gaps = 65/250 (26%)

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIV-IK 145
           ++ DK  +K+++++CGVPV    +V+      +    I  P  +KP  G  + G+ + ++
Sbjct: 217 IAQDKDFTKRLLAACGVPVPEGQIVHSPEEAWEVAQDIGFPVTVKPSDGNHARGVTLDLR 276

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE-------------- 191
            +  I      +     G  +++E+++DG E    V+G   +                  
Sbjct: 277 DEADIKAAFALAQP--EGSDVIVERFIDGTEHRILVVGGKVVAACRGETVSVAGNGKSTL 334

Query: 192 ----IAVPKSDFYSYELKYSSLNSTHVLPA------------------------------ 217
                 V +      E +Y         PA                              
Sbjct: 335 RELVAVVNQDPRRGPEQEYPLDWINLEAPAVKLELKRQNVTPDTIPAQGTSVLLQRNGNM 394

Query: 218 --KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF-----WLEINVQPGMT- 269
                 +++ EV  +A LA + +G   I+  D +   +SR +       LE+N  PG+  
Sbjct: 395 AIDCTDEVHPEVAYMATLAAKIVGL-DIAGMDMILQDVSRPMKEQGGAILEVNAGPGLLM 453

Query: 270 ---PVSIFPE 276
              P S  P 
Sbjct: 454 HLKPTSGAPR 463


>gi|34557652|ref|NP_907467.1| acetyl-CoA carboxylase subunit A [Wolinella succinogenes DSM 1740]
 gi|34483369|emb|CAE10367.1| PUTATIVE PYRUVATE CARBOXYLASE A SUBUNIT [Wolinella succinogenes]
          Length = 473

 Score = 69.4 bits (169), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 91/222 (40%), Gaps = 20/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-L 112
            +H  +G   E+ L    +    + +        A   DK  +++++   G+PV P    
Sbjct: 76  AIHPGYGFLSENALFAKKVAEAGLVWIGPNSEVIAKMGDKNAAREIMQRHGIPVVPGTEP 135

Query: 113 VNRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSWNHGD 164
           +N+ +M+S       I  P ++K   GG   GI V++K++ +         ++ ++   D
Sbjct: 136 LNKESMESIKRHARRIGYPVILKASSGGGGRGIRVVQKEEELEDSFNACKREAMAFFKND 195

Query: 165 QLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+YV +   +   ++ D   +V  +            K        + P+  +  D
Sbjct: 196 DVFMEKYVQNPKHIEFQILADNYGNVIHLMERDCSIQRRHQKL-----VEIAPSPTMSED 250

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + + +  +A  A +A G       +FL D  +   +++E+N 
Sbjct: 251 LRRRMGAVAVAAAKATGYSNAGTVEFLVDDYNN-FYFMEMNT 291


>gi|312963943|ref|ZP_07778414.1| acetyl-CoA carboxylase [Pseudomonas fluorescens WH6]
 gi|311281978|gb|EFQ60588.1| acetyl-CoA carboxylase [Pseudomonas fluorescens WH6]
          Length = 471

 Score = 69.4 bits (169), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 76/221 (34%), Gaps = 20/221 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            LH  +G   E+  +  I     I    +         DK  +++ +   GVPV P    
Sbjct: 76  ALHPGYGFLSENAELADICAERGIKLIGAAAEVIRRMGDKTEARRSMIKAGVPVTPGTEG 135

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGD 164
            +      +     I  P ++K   GG   GI      + +           + ++   +
Sbjct: 136 NVADIAEALTEGDRIGYPVMLKATSGGGGRGIRRCNSREELEQAFPRVISEATKAFGSAE 195

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDI 223
             L +  V+   +   ++GD+  +V  +            K        + P  ++  + 
Sbjct: 196 VFLEKCIVNPKHIEAQILGDSFGNVVHLFERDCSIQRRNQKL-----IEIAPSPQLTPEQ 250

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              +  L+  A +A+G       +FL      +V+++E+N 
Sbjct: 251 RAYIGDLSVRAAKAVGYENAGTVEFLL--AEGEVYFMEMNT 289


>gi|255016520|ref|ZP_05288646.1| putative biotin carboxylase 1 [Bacteroides sp. 2_1_7]
          Length = 503

 Score = 69.4 bits (169), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 44/253 (17%), Positives = 88/253 (34%), Gaps = 29/253 (11%)

Query: 32  KVSQIDVDRSVGLVLAHLKPDLAF-------NVLHGNFG---EDGLVQAILELLEIPYTH 81
           +   I  D +    L   KPDL           +H  +G   E+       E   + +  
Sbjct: 47  EAYCISEDEADTSYL---KPDLILEIAKKTGAAIHPGYGFLSENADFARRCEEEGVIFIG 103

Query: 82  SGILASALSMDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGS 137
                 A    K  +++++   GVPV P     +            +  P ++K L GG 
Sbjct: 104 PSADVIAKMGIKTEARKIMKEAGVPVVPGTEKPVTDIEDAKKVAAEVGYPIMLKALAGGG 163

Query: 138 SLGIIVIKKDQSIPLDL-----LQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTE 191
             G+ ++  +  I           ++S+   D + IE+Y++    +   V+GD   +V  
Sbjct: 164 GKGMRLVHSEDEIEAAFRMSRSEAANSFG-NDAIYIEKYIENPHHIEVQVLGDKYGNVIY 222

Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
           +   +        K             +     +++  +A  A + IG       +F+ D
Sbjct: 223 LYERECSIQRRNQK----VIEEAPSPFVKEAARQKMLAVAVEACKKIGYYSAGTLEFMMD 278

Query: 252 PLSRKVFWLEINV 264
              +  ++LE+N 
Sbjct: 279 K-DQNFYFLEMNT 290


>gi|167901894|ref|ZP_02489099.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia
           pseudomallei NCTC 13177]
 gi|217419527|ref|ZP_03451033.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia
           pseudomallei 576]
 gi|217396831|gb|EEC36847.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia
           pseudomallei 576]
          Length = 404

 Score = 69.4 bits (169), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 48/277 (17%), Positives = 92/277 (33%), Gaps = 38/277 (13%)

Query: 19  GKACASALEDAGFKVSQID----------------VDRSVGLVLAHL----KPDLAFNVL 58
           GK    AL+  G +V  +D                +D +    L  L    +P L    +
Sbjct: 27  GKEVIIALQRLGVEVIAVDRYPNAPGHQVAHRAHVIDMTDPDALRALVDAERPHLVVPEI 86

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKM-RSKQVVSSCGVPVCPSILVNRFT 117
                 D L  A +E   +        A+ L+M++    +      G+P  P      F 
Sbjct: 87  EAI-ATDAL--AAIEAAGVCEVIPTARATQLTMNREGIRRLAAEELGLPTSPYAFAQSFD 143

Query: 118 MDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH--GDQLLIEQYV- 172
             +  +  I  P V+KP+   S  G  V++ +  I      + +       ++++E ++ 
Sbjct: 144 EFAAAVARIGFPCVVKPVMSSSGKGQSVVRSEADIEPAWRYAMAGGRVNHGRVIVEGFIR 203

Query: 173 ---DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
              +  +LT   +  AS                   Y         P  +     +  + 
Sbjct: 204 FDYEITQLTVRAIDSASGQTRTSFCAPIGHLQVAGDY----VESWQPQPMSAKALERSRD 259

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
           +A     A+G RGI   +         V++ E++ +P
Sbjct: 260 IAHRVTSALGGRGIFGVELFVR--GDDVWFSEVSPRP 294


>gi|54308874|ref|YP_129894.1| phosphoribosylglycinamide formyltransferase 2 [Photobacterium
           profundum SS9]
 gi|81828773|sp|Q6LRI4|PURT_PHOPR RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|46913304|emb|CAG20092.1| putative phosphoribosylglycinamide formyltransferase 2
           [Photobacterium profundum SS9]
          Length = 391

 Score = 69.4 bits (169), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 48/286 (16%), Positives = 102/286 (35%), Gaps = 56/286 (19%)

Query: 19  GKACASALEDAGFKVSQID-VDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEI 77
           GK  A   +  G +V  +D  D +  + +AH       ++L G+      ++ ++EL + 
Sbjct: 22  GKEVAIECQRLGLEVIAVDRYDNAPAMQVAHRSH--VIDMLDGD-----ALRKLIELEQP 74

Query: 78  PYTHSGILASALSMD---------------KMRSKQVVSSCGV----------PVCPSIL 112
            Y    I   A++ D                  +K  ++  G+          P  P   
Sbjct: 75  HYVVPEIE--AIATDTLVSLEAEGVNIVPTANATKLTMNREGIRRLAAEDLQIPTSPFEF 132

Query: 113 VNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL--DLLQSSSWNHGDQLLI 168
            +++   + +   +  P V+KP+   S  G  VIK    I       Q        ++++
Sbjct: 133 ADQYDDFVAAVERVGTPCVVKPIMSSSGKGQSVIKTPADIEASWQYAQEGGRAGTGRVVV 192

Query: 169 EQYVDGIELTCGVMGDASLDVTEIAVP---KSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
           E ++   +    ++   ++D      P   + +   Y   +         P ++  +  K
Sbjct: 193 EGFIK-FDYEITLLTTRAVDGIHFCAPIGHRQEEGDYRESW--------QPQQMSDEALK 243

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP---GM 268
             Q +A     A+G  G+   +        +V + E++ +P   GM
Sbjct: 244 AAQDVAEKVVNALGGYGLFGVELFVR--GNEVLFNEVSPRPHDTGM 287


>gi|89101014|ref|ZP_01173857.1| phosphoribosylaminoimidazole carboxylase [Bacillus sp. NRRL
           B-14911]
 gi|89084275|gb|EAR63433.1| phosphoribosylaminoimidazole carboxylase [Bacillus sp. NRRL
           B-14911]
          Length = 386

 Score = 69.4 bits (169), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 31/192 (16%), Positives = 71/192 (36%), Gaps = 15/192 (7%)

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--FTMDSQHLISPPYVIKPLKGG 136
           Y   G     ++ D++  K+ +   G  V P   + +     D+   +  P V+K  +GG
Sbjct: 96  YVPQGSELLRITQDRLTEKEAIERAGAKVAPYARIEKTADIYDNIEKLDFPAVLKTARGG 155

Query: 137 -SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAV 194
               G  VI+    IP               ++E+++    E++  +  +   +     V
Sbjct: 156 YDGKGQYVIRSKDDIPEAAELLEK----GICVLEKWISFQKEISVIIARNPDGETAVFPV 211

Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
            ++          ++    ++PA I     ++ + LA    +A+G  G    +       
Sbjct: 212 GENIHKD------NILHETIVPAHISESAARKAEDLAKRIGKALGLVGTLAVEMFLS-DG 264

Query: 255 RKVFWLEINVQP 266
            +++  E+  +P
Sbjct: 265 DEIYINELAPRP 276


>gi|269215538|ref|ZP_06159392.1| carbamoyl-phosphate synthase, large subunit [Slackia exigua ATCC
           700122]
 gi|269131025|gb|EEZ62100.1| carbamoyl-phosphate synthase, large subunit [Slackia exigua ATCC
           700122]
          Length = 1091

 Score = 69.4 bits (169), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 45/278 (16%), Positives = 96/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQID------------VDRS---------VGLVLAHLKPDLAFN 56
           SG      L+D G++V  ++            VDR+         +  ++   +PD    
Sbjct: 29  SGTQACKVLKDEGYEVVLVNSNPATIMTDPALVDRTYVEPITPDFIERIIEAERPDALLA 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--S 110
            + G    +  V      +LE   +      + A     D+    + ++  GV +     
Sbjct: 89  TIGGQTALNAAVSLARSGVLERFGVELIGCDLPAIETGEDRKLFAEAMADIGVEIARSGY 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     I  P V++P       G  +      +   + Q    +   ++L+E+
Sbjct: 149 AYALDDALALAESIGYPVVLRPSFTLGGAGGGIAHDANELRDIVSQGLELSPTGEVLVEE 208

Query: 171 YVDG-IELTCGVMGDASL-DVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            ++G  E    VM D +   +   ++   D           +S  V PA+ +    Y+ +
Sbjct: 209 SIEGWKEYEMEVMRDTAGNGIIVCSIENLDPMGVHT----GDSITVAPAQTLSDIEYQRM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + +G   G S   F  +P   ++  +E+N 
Sbjct: 265 RAASLAILERVGVETGGSNVQFAVNPTDGRLIVIEMNP 302



 Score = 37.0 bits (85), Expect = 3.0,   Method: Composition-based stats.
 Identities = 24/197 (12%), Positives = 66/197 (33%), Gaps = 8/197 (4%)

Query: 71  ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--QHLISPPY 128
           +L    +    +   A  L+ D+ R   V+   G     + + +           I  P 
Sbjct: 662 MLAESGVRIMGTQPEAIDLAEDRERFAAVLERIGAAYPDAGMASSLDEARTVARRIGFPL 721

Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASL 187
           +++P       G+++     S+   + Q+   +    + +++++ D  E     + D   
Sbjct: 722 LVRPSYVLGGRGMVISYDAASLSDYMDQAVRISPEHPVYLDRFLEDACECDVDALCDGQE 781

Query: 188 DVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
                 +   +       +S  +++ + P      +  +++ L       +G RG+    
Sbjct: 782 VYIGGVLEHIEEAGI---HSGDSASCIPPFSFSDRVVGQLRDLTRTLALELGVRGLINVQ 838

Query: 248 FLFDPLSRKVFWLEINV 264
           +        +  +E N 
Sbjct: 839 YAV--KGDTIHVIEANP 853


>gi|167918891|ref|ZP_02505982.1| argininosuccinate lyase [Burkholderia pseudomallei BCC215]
          Length = 849

 Score = 69.4 bits (169), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 46/234 (19%), Positives = 87/234 (37%), Gaps = 29/234 (12%)

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYVIKP 132
           L +P   +   A     DK R  + +   GV V  + +V+  T   D  H  + P V+KP
Sbjct: 97  LGLP--AADPEAIRTCRDKGRLHRRLRDAGVGVADTEIVSERTQLRDLAHGATYPRVLKP 154

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ-------LLIEQYVDGIELTCGVMGDA 185
             G  S+G+ +++    +     +       ++       +L++ +VDG E +  V+G  
Sbjct: 155 AFGSGSVGVRLVRTPAEMLAHGERMLDARGNERGIALARQVLVQSFVDGPEFSVEVVGLG 214

Query: 186 S---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR- 241
           +     V  +         +      + + H  PA I       +      A  A+G R 
Sbjct: 215 AEHGHAVLGVTGKHLGPLPH-----FVEAGHDFPAPIAAAQRDAIVAETLRALDAVGHRF 269

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA-YAGYSFRELLLWMVE 294
           G +  +        KV  +EIN +       + P+      G    ++L  M++
Sbjct: 270 GPAHVECRV--SGGKVVVIEINPR---LAGGMIPQAIEWATGV---DVLGAMID 315


>gi|167902623|ref|ZP_02489828.1| argininosuccinate lyase [Burkholderia pseudomallei NCTC 13177]
          Length = 854

 Score = 69.4 bits (169), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 46/234 (19%), Positives = 87/234 (37%), Gaps = 29/234 (12%)

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYVIKP 132
           L +P   +   A     DK R  + +   GV V  + +V+  T   D  H  + P V+KP
Sbjct: 97  LGLP--AADPEAIRTCRDKGRLHRRLRDAGVGVADTEIVSERTQLRDLAHGATYPRVLKP 154

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ-------LLIEQYVDGIELTCGVMGDA 185
             G  S+G+ +++    +     +       ++       +L++ +VDG E +  V+G  
Sbjct: 155 AFGSGSVGVRLVRTPAEMLAHGERMLDARGNERGIALARQVLVQSFVDGPEFSVEVVGLG 214

Query: 186 S---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR- 241
           +     V  +         +      + + H  PA I       +      A  A+G R 
Sbjct: 215 AEHGHAVLGVTGKHLGPLPH-----FVEAGHDFPAPIAAAQRDAIVAETLRALDAVGHRF 269

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA-YAGYSFRELLLWMVE 294
           G +  +        KV  +EIN +       + P+      G    ++L  M++
Sbjct: 270 GPAHVECRV--SGGKVVVIEINPR---LAGGMIPQAIEWATGV---DVLGAMID 315


>gi|254247595|ref|ZP_04940916.1| Formate-dependent phosphoribosylglycinamide formyltransferase
           [Burkholderia cenocepacia PC184]
 gi|124872371|gb|EAY64087.1| Formate-dependent phosphoribosylglycinamide formyltransferase
           [Burkholderia cenocepacia PC184]
          Length = 404

 Score = 69.4 bits (169), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 51/277 (18%), Positives = 96/277 (34%), Gaps = 38/277 (13%)

Query: 19  GKACASALEDAGFKVSQID----------------VDRSVGLVL----AHLKPDLAFNVL 58
           GK    AL+  G +V  +D                +D +    L       +P L    +
Sbjct: 27  GKEVIIALQRLGVEVIAVDRYPDAPGHQVAHRAHVIDMTDPAALRAVVEAERPHLIVPEI 86

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKM-RSKQVVSSCGVPVCPSILVNRFT 117
                 D L  A +E   +        A+ L+M++    +      G+P  P    + F 
Sbjct: 87  EAI-ATDAL--AAIETAGLAEVIPTARATQLTMNREGIRRLAAEELGLPTSPYAFADSFE 143

Query: 118 MDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH--GDQLLIEQYVD 173
             S  +  I  P V+KP+   S  G  V+K D  +      + +       ++++E +VD
Sbjct: 144 AFSAAVAKIGMPCVVKPVMSSSGKGQSVVKTDADVKPAWDYAMAGGRVNHGRVIVEGFVD 203

Query: 174 ----GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
                 +LT   +  A+LD                 Y         P  +     ++ + 
Sbjct: 204 FDYEITQLTVRAIDPATLDTRTYFCEPVGHVQVAGDY----VESWQPQPMSAAALEKSRE 259

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
           +A    +A+G RG+   +         V++ E++ +P
Sbjct: 260 IAHKVTEALGGRGLFGVELFVR--GDDVWFSEVSPRP 294


>gi|317124732|ref|YP_004098844.1| carbamoyl-phosphate synthase large subunit [Intrasporangium calvum
           DSM 43043]
 gi|315588820|gb|ADU48117.1| carbamoyl-phosphate synthase large subunit [Intrasporangium calvum
           DSM 43043]
          Length = 1128

 Score = 69.4 bits (169), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 51/278 (18%), Positives = 96/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG      L + G +V  +         D +              V  ++A  +PD    
Sbjct: 29  SGTQACRVLREEGIRVILVNSNPATIMTDPEFADATYIEPITPEFVEAIIAKERPDAVLA 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G    +  +      +LE    P   + + A  L  D+ + K VV  CG     S++
Sbjct: 89  TLGGQTALNCAIALHENGVLERYNCPLIGASVEAIQLGEDRQKFKGVVERCGAESARSVI 148

Query: 113 VNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     + +   +S P V++P      LG      +  +         ++   ++L+E+
Sbjct: 149 CHTMEECLAAADELSYPVVVRPSFTMGGLGSGFAYDEDDLRRIAGAGLQYSPVTEVLLEE 208

Query: 171 YVDG-IELTCGVMGD-ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEV 227
            + G  E    VM D     V   ++   D           +S  V PA  +    Y+ +
Sbjct: 209 SILGWKEYELEVMRDHRDNVVVVCSIENLDPMGVHT----GDSITVAPALTLTDREYQRL 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           + +     + +G   G     F  +P   +V  +E+N 
Sbjct: 265 RDIGIAVIREVGVETGGCNIQFAVNPADGRVIVIEMNP 302



 Score = 62.1 bits (150), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 46/270 (17%), Positives = 96/270 (35%), Gaps = 39/270 (14%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAI---- 71
           AL ++G+    +         D D S  L    L  +    V+H   G+ G +  +    
Sbjct: 583 ALRESGYDTVMVNCNPETVSTDYDTSSRLYFEPLTLEDVLEVIHAE-GQAGPIAGVIVQL 641

Query: 72  -----------LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTM 118
                      LE   +    +   A  L+ D+    QV+S  G+              +
Sbjct: 642 GGQTPLGLAQALEDEGVQIVGTSPAAIHLAEDRGAFGQVLSRAGLIAPKHGTAFSADDAL 701

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIEL 177
                I  P +++P       G++++  D S+   + +++  +    +LI++++ D IE+
Sbjct: 702 TVAREIGYPVLVRPSYVLGGRGMVIVYDDDSLVTYVEKATEASPDHPILIDRFLDDAIEI 761

Query: 178 TCGVMGDAS---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
               + D     L      V ++  +S        ++  + PA +     + V+      
Sbjct: 762 DVDALFDGEDLYLGGIMEHVEEAGIHS------GDSACTLPPATLGDAELERVRVATRKL 815

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + IG RG+    F        ++ +E N 
Sbjct: 816 AEGIGVRGLMNVQFAL--AQDILYVIEANP 843


>gi|312141263|ref|YP_004008599.1| phosphoribosylglycinamide formyltransferase purt [Rhodococcus equi
           103S]
 gi|311890602|emb|CBH49920.1| phosphoribosylglycinamide formyltransferase PurT [Rhodococcus equi
           103S]
          Length = 404

 Score = 69.4 bits (169), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 48/273 (17%), Positives = 88/273 (32%), Gaps = 36/273 (13%)

Query: 19  GKACASALEDAGFKVSQID-------------------VDRSVGLVL-AHLKPDLAFNVL 58
           GK    AL+  G +V  +D                    DR   L L    +P      +
Sbjct: 33  GKEVIIALQRLGVEVIAVDRYADAPAHQVAHRAHTVDMGDREQLLRLVEDERPHFVVPEI 92

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKM-RSKQVVSSCGVPVCPSILVNRFT 117
                E     A +E   +        A+ L+M++    +      G+P  P    +   
Sbjct: 93  EAIATE---ALAEVEERGLAVVIPTARATQLTMNREGIRRLAAEELGLPTSPYAFADSLD 149

Query: 118 M--DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL--DLLQSSSWNHGDQLLIEQYVD 173
               +   I  P VIKP+   S  G  V +    +    +   S    +  ++++E +VD
Sbjct: 150 EVRAATERIGFPCVIKPVMSSSGKGQSVARSADDLEKSWEYALSGGRVNKGRVIVEGFVD 209

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
             +    ++   ++D T    P           S        P  +        + +A  
Sbjct: 210 -FDYEITLLTVRAVDGTHFCEPIGHLQD-----SGDYIESWQPQAMSPAALAAARDVAEK 263

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
              A+G RGI   +         V++ E++ +P
Sbjct: 264 VTTALGGRGIFGVELFV--KGDDVYFSEVSPRP 294


>gi|312140987|ref|YP_004008323.1| acetyl/propionyl-CoA carboxylase alpha subunit [Rhodococcus equi
           103S]
 gi|311890326|emb|CBH49644.1| putative acetyl/propionyl-CoA carboxylase alpha subunit
           [Rhodococcus equi 103S]
          Length = 669

 Score = 69.4 bits (169), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 43/214 (20%), Positives = 81/214 (37%), Gaps = 19/214 (8%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
           +G   E+      +E   + +    + +  L   K+ SK++++  GVPV     +     
Sbjct: 86  YGFLSENADFAQAVEAAGLTWIGPPVKSIELMGSKVESKRIMAEAGVPV-----LAELDP 140

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQLLIEQYVD- 173
            +      P ++K   GG   G+ V+++  ++P +L  +            +  E+Y++ 
Sbjct: 141 GAVTETDLPVLVKASAGGGGRGMRVVRELSALPRELEAARREAQSAFGDPTVFCERYLET 200

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI---YKEVQRL 230
           G  +   VM D    V  +   +        K          P+ +   I     ++   
Sbjct: 201 GRHIEVQVMADRHGTVWAVGERECSIQRRHQK-----VVEEAPSPLVERIPAMRAKLFEA 255

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           A LA  AIG  G    +FL D      F+LE+N 
Sbjct: 256 ARLAANAIGYEGAGTVEFLADEA-GDFFFLEMNT 288


>gi|227515384|ref|ZP_03945433.1| acetyl-CoA carboxylase [Lactobacillus fermentum ATCC 14931]
 gi|227086298|gb|EEI21610.1| acetyl-CoA carboxylase [Lactobacillus fermentum ATCC 14931]
          Length = 462

 Score = 69.4 bits (169), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 29/198 (14%), Positives = 72/198 (36%), Gaps = 14/198 (7%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD----SQHLISPPYVIK 131
           ++ +        AL  DK  ++  +   G+P+          +         +  P ++K
Sbjct: 114 DLTFIGPSPETIALLGDKEAARLTMRRAGLPLVKGSQEPLHDLATALAQAEEVGYPVMLK 173

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQLLIEQYV-DGIELTCGVMGDAS 186
              GG   G+ +I+  + +         ++ +  + DQ+ +EQY+     +   V+GD  
Sbjct: 174 AAAGGGGKGMRIIRNAEEMEAKFAVAQDEARASFNDDQMYLEQYLAHPRHIEVQVIGDQY 233

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRS 246
            +   +        +   K           A +P  + + +   +  A   +   G+   
Sbjct: 234 GNALALGERDCTIQARHQK----VIEEAPAAVLPAPVREAMLAQSEQAAAQLKYEGLGTI 289

Query: 247 DFLFDPLSRKVFWLEINV 264
           +FL++      +++E+N 
Sbjct: 290 EFLYNE-DGSYYFMEMNT 306


>gi|163749092|ref|ZP_02156342.1| acetyl-CoA carboxylase multifunctional enzyme accADC, carboxyl
            transferase subunit alpha/carboxyl transferase subunit
            [Shewanella benthica KT99]
 gi|161331162|gb|EDQ02051.1| acetyl-CoA carboxylase multifunctional enzyme accADC, carboxyl
            transferase subunit alpha/carboxyl transferase subunit
            [Shewanella benthica KT99]
          Length = 1519

 Score = 69.4 bits (169), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 85/221 (38%), Gaps = 18/221 (8%)

Query: 57   VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
             LH   G   E     A+     + +    + +     +K  + +     GVPV P    
Sbjct: 1019 ALHPGIGFLSESPQFAALCVNNGVNFVGPSVHSMTTMGNKSNAIKTSQDNGVPVVPGSHG 1078

Query: 111  -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI-----PLDLLQSSSWNHGD 164
             +      ++  + I  P ++K ++GG   GI V+++   +           ++++ +GD
Sbjct: 1079 ILSNAEQAVNVANEIGYPVLLKAVQGGGGKGIQVVERQGDMISLFQQTATEAAAAFGNGD 1138

Query: 165  QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
              L E+YV     +   ++ D   +   + +          K    + + +    +P ++
Sbjct: 1139 LYL-EKYVTSLRHIEVQLLRDKFGNTKVLGIRDCSVQRNNQKVVEESGSTM----LPPEL 1193

Query: 224  YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              +V +       A    G    +F+++  + +V+++E+N 
Sbjct: 1194 KDKVLQYTLDLGNATDYMGAGTVEFIYNLDTNEVYFMEMNT 1234


>gi|91977561|ref|YP_570220.1| carbamoyl-phosphate synthase L chain, ATP-binding [Rhodopseudomonas
           palustris BisB5]
 gi|91684017|gb|ABE40319.1| Carbamoyl-phosphate synthase L chain, ATP-binding [Rhodopseudomonas
           palustris BisB5]
          Length = 691

 Score = 69.4 bits (169), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 73/220 (33%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H  +G   E       L    I +      A A   DK+ SK+  +   V   P  L 
Sbjct: 97  AVHPGYGFLSEREAFARALADAGIVFIGPNPGAIAAMGDKIESKKAAAKAKVSTVPGFLG 156

Query: 113 ---VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSWNHGDQ 165
                +  +     I  P +IK   GG   G+ +      +     L   ++ +    D+
Sbjct: 157 VIEDEKHAVKIADEIGYPVMIKASAGGGGKGMRIAHSTAEVAEGFGLAKAEAKASFGDDR 216

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+++ D   +   V+GD   +V  +   +        K             +     
Sbjct: 217 VFIEKFIVDPRHIEIQVLGDKHGNVIYLGERECSIQRRNQK----VIEEAPSPLLDEGTR 272

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +++   A    +A+        +F      +  ++LE+N 
Sbjct: 273 RKMGEQAVALAKAVNYDSAGTVEF-VAGQDKSFYFLEMNT 311


>gi|325957322|ref|YP_004292734.1| phosphoribosylaminoimidazole carboxylase ATPase subunit
           [Lactobacillus acidophilus 30SC]
 gi|325333887|gb|ADZ07795.1| phosphoribosylaminoimidazole carboxylase ATPase subunit
           [Lactobacillus acidophilus 30SC]
          Length = 362

 Score = 69.4 bits (169), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 44/208 (21%), Positives = 86/208 (41%), Gaps = 14/208 (6%)

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQ 121
           E+  +QA+ ++ +      G     ++  ++R K  + S G    P + V   T   ++ 
Sbjct: 89  ENVDLQALKDVADKVKIPQGTNLLYITKHRLREKNFLRSAGCMTAPYLPVKNMTDLKEAI 148

Query: 122 HLISPPYVIKPLKGG-SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
             I    V+K  +GG    G  V+K D  +  +         GD +L       +E +  
Sbjct: 149 KKIGYNCVLKTCEGGYDGHGQEVLKSDADLKNNAHIKEILATGDCILEGWVPFKVEASVM 208

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHV--LPAKIPLDIYKEVQRLAFLAHQAI 238
           V  +A  +VT   V ++        Y++    H+  +PA++  +IY + Q +A    +AI
Sbjct: 209 VARNAKGEVTVFPVSEN--------YNADEILHISIVPARVSKEIYAKAQAIAKQIAEAI 260

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQP 266
             RGI   +      +  ++  E+  +P
Sbjct: 261 HLRGILGVELFIL-DNGDIYVNELAPRP 287


>gi|293400953|ref|ZP_06645098.1| carbamoyl-phosphate synthase, large subunit [Erysipelotrichaceae
           bacterium 5_2_54FAA]
 gi|291305979|gb|EFE47223.1| carbamoyl-phosphate synthase, large subunit [Erysipelotrichaceae
           bacterium 5_2_54FAA]
          Length = 1070

 Score = 69.4 bits (169), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 30/228 (13%), Positives = 84/228 (36%), Gaps = 24/228 (10%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVC--PSILVNRFTMDSQHLISPPYVIKPL 133
            +    + +     + D+   ++++    +P     + +     +   + I  P +++P 
Sbjct: 650 GVKILGTSLENIDRAEDRHAFEEMLHKLDIPQPTGETAVTVEEALVIANKIGYPVLVRPS 709

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSW-NHGDQLLIEQYVDGIELTCGVMGDAS---LDV 189
                  + ++  D  + + +  +    +H   +L+++Y+ G E+    + D     +  
Sbjct: 710 YVLGGRAMEIVHNDADLKVYMATAVKEISHDAPILVDKYIVGKEMEIDAICDGEQVYIPG 769

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               + ++  +S        +S  V PA+ +   +   +   A    +     G+    F
Sbjct: 770 IMEHIERAGIHS-------GDSISVYPAQTVSQKVKDTIVDYAIRIGKGFHFIGLYNIQF 822

Query: 249 LFDPLSRKVFWLEIN-----VQPGMTPVSIFPEMAAYA----GYSFRE 287
           + D    +V+ LE+N       P ++ ++  P          G+S +E
Sbjct: 823 IIDKAE-QVYVLEVNPRSSRTVPFLSKITGVPMSHVATRCALGHSLKE 869



 Score = 62.8 bits (152), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 52/287 (18%), Positives = 107/287 (37%), Gaps = 35/287 (12%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQID------------VDRSVGLVLA------- 47
           G ++E + +   G     +L++ G++V  I+             DR     L        
Sbjct: 21  GQAAEFDYA---GSQACQSLKEEGYEVILINSNPATIMTDTAIADRVYMEPLTVEFASRI 77

Query: 48  --HLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
               +PD     L G  G + +V+     IL+   +    + + A   + D+   ++++ 
Sbjct: 78  IYKERPDAILGSLGGQTGLNLVVELANSGILDAYGVEILGTDLTAINQAEDRELFRELMY 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
               PV  S +V+     +     I  P V++P       G   +  ++ + +       
Sbjct: 138 EIKEPVPESAIVHTVEEALAFAQTIGYPLVVRPAYTLGGTGGGFVDTEEELRIITENGLK 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   Q LIE+ + G  E+   VM DA  +   I V   +     +   + +S  V P +
Sbjct: 198 LSPVQQCLIERSIAGFKEIEYEVMRDAHDNA--IVVCNMENID-PVGIHTGDSMVVAPVQ 254

Query: 219 -IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +    ++ ++  +    +A+   G        DP S K + +E+N 
Sbjct: 255 TLSDREHQMLRNASLKIIRALKICGGCNVQLALDPASFKYYIIEVNP 301


>gi|302876229|ref|YP_003844862.1| phosphoribosylaminoimidazole carboxylase, ATPase subunit
           [Clostridium cellulovorans 743B]
 gi|307686961|ref|ZP_07629407.1| phosphoribosylaminoimidazole carboxylase, ATPase subunit
           [Clostridium cellulovorans 743B]
 gi|302579086|gb|ADL53098.1| phosphoribosylaminoimidazole carboxylase, ATPase subunit
           [Clostridium cellulovorans 743B]
          Length = 391

 Score = 69.4 bits (169), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 34/179 (18%), Positives = 74/179 (41%), Gaps = 14/179 (7%)

Query: 91  MDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYVIKPLKGG-SSLGIIVIKKD 147
            +K   K ++   G+ V    LVN      +  + +    ++K  KGG    G IV+K  
Sbjct: 110 QNKYVQKSILKEAGIKVPAFYLVNSLEELRNIFYNLGEKIILKTCKGGYDGKGNIVVKNI 169

Query: 148 QSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYS 207
           + +     + S      +L++E++++  +    ++     D+T   + +++         
Sbjct: 170 KKLEDAYKEFS----DKELMVEEFINYTKEVSIIVAKNHEDITFYPIAENNHKD------ 219

Query: 208 SLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
           S+    ++PAKI  D  +++  +A    + +   G+   +F  D     V   EI  +P
Sbjct: 220 SILINSIIPAKISKDTEEKIIEVAKKVVETLDDFGVFCIEFFIDT-DLDVLVNEIAPRP 277


>gi|228916524|ref|ZP_04080090.1| Carbamoyl-phosphate synthase large chain [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228843103|gb|EEM88185.1| Carbamoyl-phosphate synthase large chain [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
          Length = 1018

 Score = 69.4 bits (169), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 42/260 (16%), Positives = 96/260 (36%), Gaps = 13/260 (5%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMR 95
             V  ++   +PD     L G  G +  V+     +LE   +    + + A   + D+  
Sbjct: 18  EFVSRIIRKERPDAILPTLGGQTGLNMAVELAKSGVLEECGVEILGTKLSAIEQAEDRDL 77

Query: 96  SKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153
            + ++     P  PS +++         + I  P +++P       G  +   ++ +   
Sbjct: 78  FRTLMQDLNEPTPPSEIIHNLDEAYGFVNEIGYPVIVRPAFTLGGTGGGICHNEEELIEI 137

Query: 154 LLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212
           +      +   Q L+E+ + G  E+   VM D++ +   I V   +       ++  +  
Sbjct: 138 VTSGLKHSPVTQCLLEKSIAGCKEIEYEVMRDSNDNA--IVVCNMENIDPVGVHTGDSIV 195

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
                 +    Y+ ++  +    +A+G  G        DP S + + +E+N  P ++  S
Sbjct: 196 VAPSQTLSDREYQMLRNTSLRIIRALGIEGGCNVQLALDPYSFQYYVIEVN--PRVSRSS 253

Query: 273 IFPEMAAYAGYSFRELLLWM 292
                +   GY   +L   +
Sbjct: 254 --ALASKATGYPIAKLAAKI 271



 Score = 65.5 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 37/283 (13%), Positives = 100/283 (35%), Gaps = 39/283 (13%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ------ 69
           A+++AG++   I         D   S  L    L  +   +++     E  +VQ      
Sbjct: 526 AIKEAGYEAIIINNNPETVSTDFSISDKLYFEPLTIEDVMHIIDLEKPEGVIVQFGGQTA 585

Query: 70  ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHL 123
               A LE   +    + +     + D+ + +  ++  G+P             +     
Sbjct: 586 INLAAKLEEHGVKILGTSLEDLDRAEDRDKFEAALTKLGIPQPVGKTATTVEQAVAIAEE 645

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + ++ + + +   +  +   +    +LI++Y+ G E+    + 
Sbjct: 646 IGYPVLVRPSYVLGGRAMEIVYRQEELLHYMKNAVKVHADHPVLIDRYMVGKEIEVDAIS 705

Query: 184 DAS---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIG 239
           D     +      + ++  +S        +S  V P + +   + +++        + + 
Sbjct: 706 DGENVFIPGIMEHIERAGVHS-------GDSIGVYPPQSLSEKLKEQIIEHTIALGKGLN 758

Query: 240 CRGISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277
             G+    F+      +V+ +E+N       P ++ ++  P  
Sbjct: 759 IVGLLNIQFVVFK--DQVYVIEVNPRASRTVPFLSKITGVPMA 799


>gi|268591317|ref|ZP_06125538.1| phosphoribosylglycinamide formyltransferase 2 [Providencia rettgeri
           DSM 1131]
 gi|291313293|gb|EFE53746.1| phosphoribosylglycinamide formyltransferase 2 [Providencia rettgeri
           DSM 1131]
          Length = 392

 Score = 69.4 bits (169), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 46/285 (16%), Positives = 98/285 (34%), Gaps = 54/285 (18%)

Query: 19  GKACASALEDAGFKVSQID--------------------VDRSVGLVLAHLKPDLAFNVL 58
           GK  A   +  G +V  +D                       ++  +++  KPD+    +
Sbjct: 24  GKEVAIECQRLGIEVIAVDRYDNAPAMHIAHRSYTINMLDGEALKQIVSREKPDIIVPEI 83

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASA----LSMDKM-RSKQVVSSCGVPVCPSILV 113
                E    Q ++EL +       ++ SA    L+MD+    +       +P      V
Sbjct: 84  -----EAIATQVLMELEQ---QGQKVVPSAKAIVLTMDREGIRRLAAEELKLPTSEYQFV 135

Query: 114 --NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG--DQLLIE 169
             N   + +   I  P ++KP+   S  G  VI+    +      S         ++++E
Sbjct: 136 DSNPDFIAAAEKIGFPCIVKPVMSSSGKGQSVIRSRAELDQAWDYSQQGGRAGQGRVIVE 195

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVP---KSDFYSYELKYSSLNSTHVLPAKIPLDIYKE 226
           + V+  +    ++  +++D      P   + +   Y   +         P  +     K+
Sbjct: 196 KMVN-FDFEITLLTVSAVDGIHFCAPIGHRQEKGDYRESW--------QPQYMSEAALKK 246

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP---GM 268
            Q +A     ++G  GI   +         + + E++ +P   GM
Sbjct: 247 AQDIAKKIVTSLGGYGIFGVELFV--CGDDIIFNEVSPRPHDTGM 289


>gi|226329196|ref|ZP_03804714.1| hypothetical protein PROPEN_03099 [Proteus penneri ATCC 35198]
 gi|225202382|gb|EEG84736.1| hypothetical protein PROPEN_03099 [Proteus penneri ATCC 35198]
          Length = 563

 Score = 69.4 bits (169), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 99/278 (35%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D +            + V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVVLVNSNPATIMTDPEMADATYIEPIHWQVVRKIIEKERPDAVLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +    Q +L    +    +   A   + D+ R  + +   G+    S +
Sbjct: 89  TMGGQTALNCALELERQGVLAEFGVTMIGATADAIDKAEDRQRFDKAMKKIGLDTARSGI 148

Query: 113 VNRFTMDS--QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +           +  P +I+P       G  +    +      ++    +  ++LLI++
Sbjct: 149 AHNLDEAFAVAEQVGFPCIIRPSFTMGGTGGGIAYNREEFEEICIRGLDLSPTNELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + +   +   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIEN----FDAMGIHTGDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  DP + ++  +E+N 
Sbjct: 265 RNASMAVLREIGVETGGSNVQFAVDPKTGRLIVIEMNP 302


>gi|167815742|ref|ZP_02447422.1| argininosuccinate lyase [Burkholderia pseudomallei 91]
          Length = 427

 Score = 69.4 bits (169), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 46/234 (19%), Positives = 87/234 (37%), Gaps = 29/234 (12%)

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYVIKP 132
           L +P   +   A     DK R  + +   GV V  + +V+  T   D  H  + P V+KP
Sbjct: 97  LGLP--AADPEAIRTCRDKGRLHRRLRDAGVGVADTEIVSERTQLRDLAHGAAYPRVLKP 154

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ-------LLIEQYVDGIELTCGVMGDA 185
             G  S+G+ +++    +     +       ++       +L++ +VDG E +  V+G  
Sbjct: 155 AFGSGSVGVRLVRTPAEMLAHGERMLDARGNERGIALARQVLVQSFVDGPEFSVEVVGLG 214

Query: 186 S---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR- 241
           +     V  +         +      + + H  PA I       +      A  A+G R 
Sbjct: 215 AEHGHAVLGVTGKHLGPLPH-----FVEAGHDFPAPIAAAQRDAIVAETLRALDAVGHRF 269

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA-YAGYSFRELLLWMVE 294
           G +  +        KV  +EIN +       + P+      G    ++L  M++
Sbjct: 270 GPAHVECRV--SGGKVVVIEINPR---LAGGMIPQAIEWATGV---DVLGAMID 315


>gi|301167681|emb|CBW27264.1| putative ribosomal protein S6 modification protein [Bacteriovorax
           marinus SJ]
          Length = 306

 Score = 69.0 bits (168), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 39/183 (21%), Positives = 76/183 (41%), Gaps = 19/183 (10%)

Query: 92  DKMRSKQVVSSCGVPVCPSILVNRFTMDSQ---HLISPPYVIKPLKGGSSLGIIVIKKDQ 148
           DK+ S Q+++   +PV  ++LV +F +D +     +  P ++K L G   +G+ + +  +
Sbjct: 108 DKLYSHQILAEYNMPVPKTMLV-KFPVDIEFIEKNLGFPVIVKTLSGSQGVGVFLCETKK 166

Query: 149 SIPLDLLQSSSWNHGDQLLIEQYV---DGIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205
           ++   +    S N    +++++++    G +L    +G   L   E    + DF     K
Sbjct: 167 NLADMMQLVESTNINANIILQEFIKSSKGRDLRVFTLGGRVLGCVERIAKEGDF-----K 221

Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            +      V   ++  +I      LA    +A     I+  D LFD         E N  
Sbjct: 222 ANFSQGGEVRAFELTPEIE----WLALEVSRAFNL-DIAGIDLLFD--GSHFKVCEANSA 274

Query: 266 PGM 268
           PG 
Sbjct: 275 PGF 277


>gi|301055377|ref|YP_003793588.1| carbamoyl-phosphate synthase large subunit [Bacillus anthracis CI]
 gi|300377546|gb|ADK06450.1| carbamoyl-phosphate synthase large subunit [Bacillus cereus biovar
           anthracis str. CI]
          Length = 1018

 Score = 69.0 bits (168), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 42/260 (16%), Positives = 96/260 (36%), Gaps = 13/260 (5%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMR 95
             V  ++   +PD     L G  G +  V+     +LE   +    + + A   + D+  
Sbjct: 18  EFVSRIIRKERPDAILPTLGGQTGLNMAVELAKSGVLEECGVEILGTKLSAIEQAEDRDL 77

Query: 96  SKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153
            + ++     P  PS +++         + I  P +++P       G  +   ++ +   
Sbjct: 78  FRTLMQDLNEPTPPSEIIHNLDEAYGFVNEIGYPVIVRPAFTLGGTGGGICHNEEELIEI 137

Query: 154 LLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212
           +      +   Q L+E+ + G  E+   VM D++ +   I V   +       ++  +  
Sbjct: 138 VTSGLKHSPVTQCLLEKSIAGCKEIEYEVMRDSNDNA--IVVCNMENIDPVGVHTGDSIV 195

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
                 +    Y+ ++  +    +A+G  G        DP S + + +E+N  P ++  S
Sbjct: 196 VAPSQTLSDREYQMLRNTSLRIIRALGIEGGCNVQLALDPYSFQYYVIEVN--PRVSRSS 253

Query: 273 IFPEMAAYAGYSFRELLLWM 292
                +   GY   +L   +
Sbjct: 254 --ALASKATGYPIAKLAAKI 271



 Score = 66.3 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 37/283 (13%), Positives = 100/283 (35%), Gaps = 39/283 (13%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ------ 69
           A+++AG++   I         D   S  L    L  +   +++     E  +VQ      
Sbjct: 526 AIKEAGYEAIIINNNPETVSTDFSISDKLYFEPLTIEDVMHIIDLEKPEGVIVQFGGQTA 585

Query: 70  ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHL 123
               A LE   +    + +     + D+ + +  ++  G+P             +     
Sbjct: 586 INLAAKLEEHGVKILGTSLEDLDRAEDRDKFEAALTKLGIPQPVGKTATTVEQAVAIAEE 645

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + ++ + + +   +  +   +    +LI++Y+ G E+    + 
Sbjct: 646 IGYPVLVRPSYVLGGRAMEIVYRQEELLHYMKNAVKVHADHPVLIDRYMVGKEIEVDAIS 705

Query: 184 DAS---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIG 239
           D     +      + ++  +S        +S  V P + +   + +++        + + 
Sbjct: 706 DGENVFIPGIMEHIERAGVHS-------GDSIGVYPPQSLSEKLKEQIIEHTIALGKGLN 758

Query: 240 CRGISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277
             G+    F+      +V+ +E+N       P ++ ++  P  
Sbjct: 759 IVGLLNIQFVV--FEDQVYVIEVNPRASRTVPFLSKITGVPMA 799


>gi|294786970|ref|ZP_06752224.1| carbamoyl-phosphate synthase, large subunit [Parascardovia
           denticolens F0305]
 gi|315226609|ref|ZP_07868397.1| carbamoyl-phosphate synthase [Parascardovia denticolens DSM 10105]
 gi|294485803|gb|EFG33437.1| carbamoyl-phosphate synthase, large subunit [Parascardovia
           denticolens F0305]
 gi|315120741|gb|EFT83873.1| carbamoyl-phosphate synthase [Parascardovia denticolens DSM 10105]
          Length = 1076

 Score = 69.0 bits (168), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 83/220 (37%), Gaps = 16/220 (7%)

Query: 68  VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS---ILVNRFTMDSQHLI 124
           + A L    +    + + A   + D+   +  + S  +P       + V+   +   + I
Sbjct: 646 IAASLATHGVKILGTSLQAIDRAEDRHEFEAALQSLEIPQPEGATAVTVDE-ALVIANRI 704

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW-NHGDQLLIEQYVDGIELTCGVMG 183
             P +++P        + ++     + + +  +    +H   +L+++YV G EL    + 
Sbjct: 705 GYPVLVRPSYVLGGRAMEIVHNGDELKVYMATAVKEISHDAPILVDRYVLGKELEIDAIC 764

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
           D       + +P    +       S +S  V P++I    + + +   A       G  G
Sbjct: 765 DGE----NVFIPGLMEHIERAGIHSGDSISVYPSQIVSDQVKQTIVDYALRIGTGFGFVG 820

Query: 243 ISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277
           +    F+ D  +R V+ LE+N       P ++ ++  P  
Sbjct: 821 LYNIQFIVDKQNR-VYVLEVNPRSSRTVPFLSKITGVPMS 859



 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 51/287 (17%), Positives = 106/287 (36%), Gaps = 35/287 (12%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQID-------VDRSVGL--------------V 45
           G ++E + S   G     +L + G++V  I+        DRS+                V
Sbjct: 21  GQAAEFDYS---GSQACQSLREEGYEVVLINSNPATIMTDRSIADKVYIEPLTVEFAKRV 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   +PD     L G  G + +V+     +L+   +    + + A   + D+   + +++
Sbjct: 78  IYKERPDAILGTLGGQTGLNMVVELHNDGVLDEYGVEILGTTLEAINKAEDRELFRSLMN 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G PV  S +V+     +     +  P V++P       G      ++ +         
Sbjct: 138 ELGEPVPESDIVHTVEDAVRFAGELGYPVVVRPAYTLGGTGGGFAHNERELRHIADAGLK 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   Q LIE+ + G  E+   VM DA  +   I V   +     +   + +S  V P +
Sbjct: 198 MSPVHQCLIERSIAGFKEIEYEVMRDAHDNA--IVVCNMENVD-PVGIHTGDSVVVAPIQ 254

Query: 219 -IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +     + ++  +    +A+   G        +P S   + +E+N 
Sbjct: 255 TLTDRENQMLRDASLRIIRALKICGGCNVQLALNPQSFNYYVIEVNP 301


>gi|289620658|emb|CBI52789.1| unnamed protein product [Sordaria macrospora]
          Length = 1153

 Score = 69.0 bits (168), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 86/221 (38%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
           ++H  +G   E+      +E   + +            DK+ ++++  + GVPV P    
Sbjct: 100 MIHPGYGFLSENAEFARKVEKAGLIFIGPSPEVIDALGDKVSARKLAIAAGVPVVPGTEG 159

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGDQ 165
            +       D       P +IK   GG   G+ V++++ S+         ++ S      
Sbjct: 160 AVETFEAVKDFTDKYGFPIIIKAAYGGGGRGMRVVREEASLKESFERATSEAKSAFGNGT 219

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDI 223
           + +E+++D    +   ++GD   ++  +           ++        + PA  +P + 
Sbjct: 220 VFVERFLDKPKHIEVQLLGDNHGNIVHLYE-----RDCSVQRRHQKVVEIAPAKDLPTET 274

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              +   A    +++  R    ++FL D  +R  +++EIN 
Sbjct: 275 RDAILADAVKLAKSVNYRNAGTAEFLVDQQNR-YYFIEINP 314


>gi|87123356|ref|ZP_01079207.1| Phosphoribosylglycinamide formyltransferase 2 [Synechococcus sp.
           RS9917]
 gi|86169076|gb|EAQ70332.1| Phosphoribosylglycinamide formyltransferase 2 [Synechococcus sp.
           RS9917]
          Length = 388

 Score = 69.0 bits (168), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 41/240 (17%), Positives = 90/240 (37%), Gaps = 16/240 (6%)

Query: 32  KVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSM 91
           +V  +    ++  V+   +PD+    +           A LE   I        A+A++M
Sbjct: 50  EVFTMTDAEALQAVVRRHQPDVVIPEIEALA---VDALAALESEGIRVI-PTARATAVTM 105

Query: 92  DKMRSKQVVS-SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQ 148
           ++ R + + + S G+        +  +   +    +  P V+KP+   S  G  V++   
Sbjct: 106 NRDRIRDLAAGSLGLRTARFAYASNLKELQEVAAPLGWPVVVKPVMSSSGKGQSVVQAAS 165

Query: 149 SIPLDL--LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
            +        S +   GD++++E+++   +L   ++    LD T +  P          Y
Sbjct: 166 DLAAAWQTAVSGARGSGDRVIVEEFLR-FDLEITLLTIRQLDGTTLFCPPIGHEQSGGDY 224

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
                    PA +     ++ Q +A      +G  G+   +F        V + E++ +P
Sbjct: 225 QCSW----QPAALSNAQLEQAQAMARAITDNLGGAGLFGVEFFL--CGDAVIFSELSPRP 278


>gi|312898980|ref|ZP_07758367.1| pyruvate carboxylase [Megasphaera micronuciformis F0359]
 gi|310619887|gb|EFQ03460.1| pyruvate carboxylase [Megasphaera micronuciformis F0359]
          Length = 1151

 Score = 69.0 bits (168), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 47/281 (16%), Positives = 102/281 (36%), Gaps = 34/281 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +A+     S E  +SL   +A  S L   G K     +D    + +AH + D+  + +H 
Sbjct: 39  VAI----YSKEDSLSLHRFRADESYLVGKGKKPVDAYLDIEDIVRIAH-EHDV--DAIHP 91

Query: 61  NFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV--------PVCP 109
            +G   E+  +    E   I +    +    +  DK+ ++      G+        PV  
Sbjct: 92  GYGFLSENAELAKRCEEEGIIFIGPKVEHLIMFGDKINARIQAKKAGIQFIPGSDGPVMN 151

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS-----SSWNHGD 164
              V RF  +    +  P ++K + GG   G+ ++ K   +     ++      ++   +
Sbjct: 152 YAEVERFAKE----VGLPIMLKAVNGGGGRGMRMVDKMADLKDAYERAKSEAKLAFGSDE 207

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDI 223
             L +  ++   +   +MGD   +V  +            K        + PA  +   +
Sbjct: 208 IYLEKCIINPKHIEVQIMGDEHGNVIHLFERDCSIQRRHQK-----VVEIAPAFSLSKKL 262

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +++   A    + +        +FL      K +++E+N 
Sbjct: 263 RQDICDAALKLMKNVNYVNAGTVEFLVT-SDEKFYFIEVNP 302


>gi|228987031|ref|ZP_04147156.1| Carbamoyl-phosphate synthase large chain [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|228772625|gb|EEM21066.1| Carbamoyl-phosphate synthase large chain [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
          Length = 1018

 Score = 69.0 bits (168), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 42/260 (16%), Positives = 96/260 (36%), Gaps = 13/260 (5%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMR 95
             V  ++   +PD     L G  G +  V+     +LE   +    + + A   + D+  
Sbjct: 18  EFVSRIIRKERPDAILPTLGGQTGLNMAVELAKSGVLEECGVEILGTKLSAIEQAEDRDL 77

Query: 96  SKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153
            + ++     P  PS +++         + I  P +++P       G  +   ++ +   
Sbjct: 78  FRTLMQDLNEPTPPSEIIHNLDEAYGFVNEIGYPVIVRPAFTLGGTGGGICHNEEELIEI 137

Query: 154 LLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212
           +      +   Q L+E+ + G  E+   VM D++ +   I V   +       ++  +  
Sbjct: 138 VTSGLKHSPVTQCLLEKSIAGCKEIEYEVMRDSNDNA--IVVCNMENIDPVGVHTGDSIV 195

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
                 +    Y+ ++  +    +A+G  G        DP S + + +E+N  P ++  S
Sbjct: 196 VAPSQTLSDREYQMLRNTSLRIIRALGIEGGCNVQLALDPYSFQYYVIEVN--PRVSRSS 253

Query: 273 IFPEMAAYAGYSFRELLLWM 292
                +   GY   +L   +
Sbjct: 254 --ALASKATGYPIAKLAAKI 271



 Score = 65.5 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 37/283 (13%), Positives = 100/283 (35%), Gaps = 39/283 (13%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ------ 69
           A+++AG++   I         D   S  L    L  +   +++     E  +VQ      
Sbjct: 526 AIKEAGYEAIIINNNPETVSTDFSISDKLYFEPLTIEDVMHIIDLEKPEGVIVQFGGQTA 585

Query: 70  ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHL 123
               A LE   +    + +     + D+ + +  ++  G+P             +     
Sbjct: 586 INLAAKLEEHGVKILGTSLEDLDRAEDRDKFEAALTKLGIPQPVGKTATTVEQAVAIAEE 645

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + ++ + + +   +  +   +    +LI++Y+ G E+    + 
Sbjct: 646 IGYPVLVRPSYVLGGRAMEIVYRQEELLHYMKNAVKVHADHPVLIDRYMVGKEIEVDAIS 705

Query: 184 DAS---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIG 239
           D     +      + ++  +S        +S  V P + +   + +++        + + 
Sbjct: 706 DGENVFIPGIMEHIERAGVHS-------GDSIGVYPPQSLSEKLKEQIIEHTIALGKGLN 758

Query: 240 CRGISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277
             G+    F+      +V+ +E+N       P ++ ++  P  
Sbjct: 759 IVGLLNIQFVVFK--DQVYVIEVNPRASRTVPFLSKITGVPMA 799


>gi|229140535|ref|ZP_04269090.1| Carbamoyl-phosphate synthase large chain [Bacillus cereus
           BDRD-ST26]
 gi|228643096|gb|EEK99372.1| Carbamoyl-phosphate synthase large chain [Bacillus cereus
           BDRD-ST26]
          Length = 1018

 Score = 69.0 bits (168), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 42/260 (16%), Positives = 96/260 (36%), Gaps = 13/260 (5%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMR 95
             V  ++   +PD     L G  G +  V+     +LE   +    + + A   + D+  
Sbjct: 18  EFVSRIIRKERPDAILPTLGGQTGLNMAVELAKSGVLEECGVEILGTKLSAIEQAEDRDL 77

Query: 96  SKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153
            + ++     P  PS +++         + I  P +++P       G  +   ++ +   
Sbjct: 78  FRTLMQDLNEPTPPSEIIHNLDEAYGFVNEIGYPVIVRPAFTLGGTGGGICHNEEELIEI 137

Query: 154 LLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212
           +      +   Q L+E+ + G  E+   VM D++ +   I V   +       ++  +  
Sbjct: 138 VTSGLKHSPVTQCLLEKSIAGCKEIEYEVMRDSNDNA--IVVCNMENIDPVGVHTGDSIV 195

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
                 +    Y+ ++  +    +A+G  G        DP S + + +E+N  P ++  S
Sbjct: 196 VAPSQTLSDREYQMLRNTSLRIIRALGIEGGCNVQLALDPYSFQYYVIEVN--PRVSRSS 253

Query: 273 IFPEMAAYAGYSFRELLLWM 292
                +   GY   +L   +
Sbjct: 254 --ALASKATGYPIAKLAAKI 271



 Score = 65.5 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 37/283 (13%), Positives = 100/283 (35%), Gaps = 39/283 (13%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ------ 69
           A+++AG++   I         D   S  L    L  +   +++     E  +VQ      
Sbjct: 526 AIKEAGYEAIIINNNPETVSTDFSISDKLYFEPLTIEDVMHIIDLEKPEGVIVQFGGQTA 585

Query: 70  ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHL 123
               A LE   +    + +     + D+ + +  ++  G+P             +     
Sbjct: 586 INLAAKLEEHGVKILGTSLEDLDRAEDRDKFEAALTKLGIPQPVGKTATTVEQAVAIAEE 645

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + ++ + + +   +  +   +    +LI++Y+ G E+    + 
Sbjct: 646 IGYPVLVRPSYVLGGRAMEIVYRQEELLHYMKNAVKVHADHPVLIDRYMVGKEIEVDAIS 705

Query: 184 DAS---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIG 239
           D     +      + ++  +S        +S  V P + +   + +++        + + 
Sbjct: 706 DGENVFIPGIMEHIERAGVHS-------GDSIGVYPPQSLSEKLKEQIIEHTIALGKGLN 758

Query: 240 CRGISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277
             G+    F+      +V+ +E+N       P ++ ++  P  
Sbjct: 759 IVGLLNIQFVVFK--DQVYVIEVNPRASRTVPFLSKITGVPMA 799


>gi|227830998|ref|YP_002832778.1| lysine biosynthesis enzyme LysX [Sulfolobus islandicus L.S.2.15]
 gi|229579878|ref|YP_002838277.1| lysine biosynthesis enzyme LysX [Sulfolobus islandicus Y.G.57.14]
 gi|238620432|ref|YP_002915258.1| lysine biosynthesis enzyme LysX [Sulfolobus islandicus M.16.4]
 gi|284998490|ref|YP_003420258.1| Lysine biosynthesis enzyme LysX [Sulfolobus islandicus L.D.8.5]
 gi|227457446|gb|ACP36133.1| lysine biosynthesis enzyme LysX [Sulfolobus islandicus L.S.2.15]
 gi|228010593|gb|ACP46355.1| lysine biosynthesis enzyme LysX [Sulfolobus islandicus Y.G.57.14]
 gi|238381502|gb|ACR42590.1| lysine biosynthesis enzyme LysX [Sulfolobus islandicus M.16.4]
 gi|284446386|gb|ADB87888.1| Lysine biosynthesis enzyme LysX [Sulfolobus islandicus L.D.8.5]
 gi|323475307|gb|ADX85913.1| lysine biosynthesis enzyme LysX [Sulfolobus islandicus REY15A]
          Length = 283

 Score = 69.0 bits (168), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 53/254 (20%), Positives = 104/254 (40%), Gaps = 33/254 (12%)

Query: 27  EDAGFKVSQIDV-DRSVGLVLAHLKPDL-AF---NVLHGNFGEDGLVQAIL-ELLEIPYT 80
           +  G++V+ I   D  +     +++ D+  F   N+ H       L+ + L E L  P  
Sbjct: 22  KKLGYQVTTIYSKDFVLFSNEFNIENDVNLFIQRNISHNR----ALITSFLVEQLGYPVI 77

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGSS 138
            +  +      +K+ +  +++   +P   + +    T  M+    +  P VIKP++G  S
Sbjct: 78  -NDHMTLIRCENKIFTTYILAKHNIPTPKTFIAFDKTNAMEYSKKLGYPVVIKPVEG--S 134

Query: 139 LGIIVIKKDQSIP----LDLLQSSSWNHGDQLLIEQYV--DGIELTCGVMGDASLDVTEI 192
            G +V K D        L+  + S+  + D   I+++V     ++   V+GD +  V   
Sbjct: 135 WGRMVAKADNLDVLYSYLEYQEFSTQKYKDIYYIQEFVNKPNRDIRIFVIGDET-PVGIY 193

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            V ++         +   +T +     PL I +E++ LA      IG   +   D +F+ 
Sbjct: 194 RVNEN---------NWRTNTALGAKAYPLKIDEELKELALKVKDIIGGFFLG-ID-IFED 242

Query: 253 LSRKVFWLEINVQP 266
             R     E+N  P
Sbjct: 243 KDRGYLVDEVNGVP 256


>gi|169350664|ref|ZP_02867602.1| hypothetical protein CLOSPI_01437 [Clostridium spiroforme DSM 1552]
 gi|169292527|gb|EDS74660.1| hypothetical protein CLOSPI_01437 [Clostridium spiroforme DSM 1552]
          Length = 1060

 Score = 69.0 bits (168), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 29/199 (14%), Positives = 70/199 (35%), Gaps = 14/199 (7%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--FTMDSQHLISPPYV 129
           L  L +    +       + ++   ++++    +P      V      ++    I  P +
Sbjct: 643 LSELGVKLIGTDCTGIERAENRDVFEKLLDKLNIPQAKGKAVTNVFDGLEVASEIGYPVL 702

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS--- 186
           ++P        + +I  D+ +   L  +   +    +L+++Y+ G E+    + D     
Sbjct: 703 VRPSFVLGGRAMQIINNDEQLKHYLKTAVEIDEDKPVLVDKYIRGKEVEVDAICDGKDVF 762

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISR 245
           +      V ++  +S        +S  V P   I   +   ++         IG  G+  
Sbjct: 763 IPGIMELVERTGIHS-------GDSISVYPTFSISEKVKNTIKEYTTKLGLGIGIIGLFN 815

Query: 246 SDFLFDPLSRKVFWLEINV 264
             F+ D     V+ +E+N 
Sbjct: 816 IQFIVDKDEN-VYIIEVNP 833



 Score = 68.6 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 46/269 (17%), Positives = 104/269 (38%), Gaps = 32/269 (11%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL++ G++V   + +                       +  ++ + +PD     + G  G
Sbjct: 36  ALKEEGYEVVLCNCNPATIMTDTTIADKVYMEPLTLEFIAKIIRYERPDAILPGIGGQTG 95

Query: 64  EDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT-- 117
            +  +Q     IL+  ++    +   +   + D+   K++ ++   PV PS + N     
Sbjct: 96  LNLAMQLEKKGILKECQVELLGTRSKSIEQAEDRELFKELCTNLNEPVLPSDIANSIEEG 155

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IE 176
           ++    I  P V++P       G      ++ +   +  + + +   Q+LIE+ + G  E
Sbjct: 156 IEVAKKIGYPVVLRPAFTLGGTGGGFADDEKELKSLIKHALTLSPTHQVLIEKSIKGYKE 215

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAH 235
           +   V+ D +     I V   +     +   + +S  V P++ +    Y  ++  A    
Sbjct: 216 IEYEVIRDKNDSA--ITVCNMENLD-PVGIHTGDSIVVCPSQTLTNKEYHMLRDSALKII 272

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +A+   G     F  DP S + + +E+N 
Sbjct: 273 RALEIEGGCNVQFALDPKSFQYYLIEVNP 301


>gi|160944594|ref|ZP_02091821.1| hypothetical protein FAEPRAM212_02107 [Faecalibacterium prausnitzii
           M21/2]
 gi|158443778|gb|EDP20782.1| hypothetical protein FAEPRAM212_02107 [Faecalibacterium prausnitzii
           M21/2]
 gi|295104397|emb|CBL01941.1| carbamoyl-phosphate synthase large subunit [Faecalibacterium
           prausnitzii SL3/3]
          Length = 1083

 Score = 69.0 bits (168), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 53/287 (18%), Positives = 99/287 (34%), Gaps = 35/287 (12%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI---------DVD------------RSVGLV 45
           G ++E + S   G     AL+  G +   +         D D              V  +
Sbjct: 21  GQAAEFDYS---GTQACRALKAEGIETVLLNSNPATIMTDPDVADHVYIEPMTLEVVERI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           L   KPD     L G  G +  ++      L+   I            + D+   K+ + 
Sbjct: 78  LDIEKPDSVLPNLGGQMGLNLSMELARSGYLDRTGIRLLACKPETIDRAEDRELFKETME 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
               P+ PS +V   +  +D    I  P +++P       G  + +  + +         
Sbjct: 138 KLHQPIIPSEVVETLQDALDCADRIGYPVIVRPAFTMGGTGGGICETREKLIEIGTNGLR 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   Q+L+E+ + G  E+   VM D   +V  I V   +     +   + +S  V P++
Sbjct: 198 LSPIHQILVEKCIAGWKEIEYEVMRDHKGNV--ITVCNMENLD-PVGIHTGDSVVVAPSQ 254

Query: 219 -IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +    Y+ ++  A      +G  G     F   P S     +E+N 
Sbjct: 255 TLTDHEYQMLRTAALDIITELGIEGGCNCQFALKPDSFDYAVIEVNP 301



 Score = 61.3 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/200 (15%), Positives = 74/200 (37%), Gaps = 16/200 (8%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQHLISPPYV 129
           ++ + +P   +   A   + D+ R  +++  C +P  P   V      + +   I  P +
Sbjct: 656 MDEIGLPILGTPADAIDEAEDRERFDELLERCNIPRAPGRTVFNLDEALAAAEEIGLPVL 715

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDL-LQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS-- 186
           ++P        +IV      I   + + +   +    +L+++Y+ G E     + D    
Sbjct: 716 MRPSYVLGGQNMIVAYNKADIIEYMGVITEHVDMDHPVLLDKYIMGTECEVDAICDGENF 775

Query: 187 -LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGIS 244
            +      V ++  +S        +S  V PA+ +  D    +        + +   G+ 
Sbjct: 776 LIPGIMEQVERTGVHS-------GDSICVYPAQHLTQDEIDTMVDYTGRFARELHVTGL- 827

Query: 245 RSDFLFDPLSRKVFWLEINV 264
             +  +     +V+ +E+N 
Sbjct: 828 -VNVQYAVSHGRVYVIEVNP 846


>gi|294340423|emb|CAZ88804.1| Carbamoyl-phosphate synthase large chain (Carbamoyl-phosphate
           synthetase ammonia chain) [Thiomonas sp. 3As]
          Length = 1074

 Score = 69.0 bits (168), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 27/198 (13%), Positives = 71/198 (35%), Gaps = 8/198 (4%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           LE   +P   +      ++ D+ R + +V   G+   P+         +     I  P V
Sbjct: 649 LEANGVPIIGTSPDMIDMAEDRERFQHLVEQLGLLQPPNRTARSEAEALTKAEEIGYPLV 708

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++ + + +   + ++   +H   +L+++++ D IE     + D +  
Sbjct: 709 VRPSYVLGGRAMEIVHEQRDLERYMREAVKVSHDSPVLLDRFLNDAIECDVDAICDGTEV 768

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                +   +       +S  ++  + P  +       ++         +   G+    F
Sbjct: 769 FIGGVMEHIEQAGV---HSGDSACSLPPYSLSAATVARIKEQTVKLAHGLKVVGLMNVQF 825

Query: 249 LFDPLSRK--VFWLEINV 264
               L  +  +F LE+N 
Sbjct: 826 AIQQLDGEDRIFLLEVNP 843



 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 48/278 (17%), Positives = 99/278 (35%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +              DV        + V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYKVILVNSNPATIMTDPETADVTYIEPITWQVVETIIEKERPDAILP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      +L    +    +   A  ++ D+ + KQ ++  G+    S +
Sbjct: 89  TMGGQTALNCALDLHHNGVLGKYGVELIGAKPAAIDMAEDRQKFKQAMTRIGLGSARSGI 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +        Q  I  P +I+P       G  +    +       +    +   +LLIE+
Sbjct: 149 AHTLEEAWGVQKTIGFPVIIRPSFTLGGTGGGIAYNPEEFETICKRGIEASPTSELLIEE 208

Query: 171 YVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D++ + +   ++   D           +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEFEMEVVRDSADNCIIVCSIENLDPMGVHT----GDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P   ++  +E+N 
Sbjct: 265 RNASIAVLREIGVDTGGSNVQFAVNPKDGRLIVIEMNP 302


>gi|296136188|ref|YP_003643430.1| carbamoyl-phosphate synthase, large subunit [Thiomonas intermedia
           K12]
 gi|295796310|gb|ADG31100.1| carbamoyl-phosphate synthase, large subunit [Thiomonas intermedia
           K12]
          Length = 1074

 Score = 69.0 bits (168), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 27/198 (13%), Positives = 71/198 (35%), Gaps = 8/198 (4%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           LE   +P   +      ++ D+ R + +V   G+   P+         +     I  P V
Sbjct: 649 LEANGVPIIGTSPDMIDMAEDRERFQHLVEQLGLLQPPNRTARSEAEALTKAEEIGYPLV 708

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++ + + +   + ++   +H   +L+++++ D IE     + D +  
Sbjct: 709 VRPSYVLGGRAMEIVHEQRDLERYMREAVKVSHDSPVLLDRFLNDAIECDVDAICDGTEV 768

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                +   +       +S  ++  + P  +       ++         +   G+    F
Sbjct: 769 FIGGVMEHIEQAGV---HSGDSACSLPPYSLSAATVARIKEQTVKLAHGLKVVGLMNVQF 825

Query: 249 LFDPLSRK--VFWLEINV 264
               L  +  +F LE+N 
Sbjct: 826 AIQQLDGEDRIFLLEVNP 843



 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 48/278 (17%), Positives = 100/278 (35%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +              DV        + V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYKVILVNSNPATIMTDPETADVTYIEPITWQVVETIIEKERPDAILP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      +L    +    +   A  ++ D+ + KQ ++  G+    S +
Sbjct: 89  TMGGQTALNCALDLHHNGVLGKYGVELIGAKPAAIDMAEDRQKFKQAMTRIGLGSARSGI 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +        Q  I  P +I+P       G  +    +       +    +  ++LLIE+
Sbjct: 149 AHTLEEAWAVQKTIGFPVIIRPSFTLGGTGGGIAYNPEEFETICKRGIEASPTNELLIEE 208

Query: 171 YVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D++ + +   ++   D           +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEFEMEVVRDSADNCIIVCSIENLDPMGVHT----GDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P   ++  +E+N 
Sbjct: 265 RNASIAVLREIGVDTGGSNVQFAVNPKDGRLIVIEMNP 302


>gi|225375971|ref|ZP_03753192.1| hypothetical protein ROSEINA2194_01608 [Roseburia inulinivorans DSM
           16841]
 gi|225212224|gb|EEG94578.1| hypothetical protein ROSEINA2194_01608 [Roseburia inulinivorans DSM
           16841]
          Length = 1068

 Score = 69.0 bits (168), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 35/225 (15%), Positives = 83/225 (36%), Gaps = 13/225 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTMDSQHLISPPYV 129
           L  + +    +       + D+    +++    +P      +       +  + +  P +
Sbjct: 647 LMKMGVKILGTKAEDVDAAEDRELFDEILEKTQIPRAAGGTVFTAEEAKEVANRLGYPVL 706

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           ++P       G+ +   D+ I   +   +       +L+++Y+ G E+      DA  D 
Sbjct: 707 VRPSYVLGGQGMKIAFNDEEIEEFIGIINRIAQDHPILVDKYLQGKEIEV----DAVCDG 762

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           T+I +P    +       S +S  V PA  I   + + +        QA+   G+    F
Sbjct: 763 TDILIPGIMEHIERTGIHSGDSISVYPAPTISEPVKEMIVEYTKRLAQALHVIGLINIQF 822

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +   +  +V+ +E+N +   T     P ++   G    +L   ++
Sbjct: 823 IV--MDEQVYVIEVNPRSSRT----VPYISKVTGIPIVDLATKVI 861



 Score = 64.0 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 42/245 (17%), Positives = 89/245 (36%), Gaps = 12/245 (4%)

Query: 27  EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLV----QAILELLEIPYTHS 82
           ++   +   +DV   +  ++A  KPD     L G  G +  +    Q +L+   +    +
Sbjct: 62  DEVYIEPLTVDV---LEKIIAKEKPDSVLPTLGGQAGLNLGMELAEQGVLDKYGVKLIGT 118

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLG 140
                  + D+   K  +   G P   S +VN  +  +   + I  P V++P       G
Sbjct: 119 TAETIFKAEDRQAFKDTMEKIGEPCAASQVVNNVQDGIKFTNTIGYPVVLRPAFTLGGSG 178

Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDF 199
             +   +Q +   L      +   ++L+E+ + G  E+   VM DA+ +   I V   + 
Sbjct: 179 GGIAHNEQELVDILTNGLRLSRVGEVLVERCIAGWKEIEYEVMRDANGN--CITVCNMEN 236

Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
                 ++  +        +    Y+ ++  A      +   G     +   P S +   
Sbjct: 237 IDPVGVHTGDSIVVAPSQTLGDKEYQMLRTSALNIISELNITGGCNVQYALHPESFEYCV 296

Query: 260 LEINV 264
           +E+N 
Sbjct: 297 IEVNP 301


>gi|116512213|ref|YP_809429.1| carbamoyl phosphate synthase large subunit [Lactococcus lactis
           subsp. cremoris SK11]
 gi|122940114|sp|Q02YG5|CARB_LACLS RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|116107867|gb|ABJ73007.1| carbamoyl-phosphate synthase large subunit [Lactococcus lactis
           subsp. cremoris SK11]
          Length = 1064

 Score = 69.0 bits (168), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 46/268 (17%), Positives = 99/268 (36%), Gaps = 30/268 (11%)

Query: 25  ALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNVLHGNFG 63
           AL++ G++V  ++        DR +                +L   +PD     L G  G
Sbjct: 36  ALKEEGYEVVLVNSNPATIMTDREIADTVYIEPITLEFVSKILRKERPDALLPTLGGQTG 95

Query: 64  EDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFT 117
            +  ++     ILE L +    + + A   + D+   K++  S   P+C S +       
Sbjct: 96  LNMAMELSKTGILEELNVELLGTKLSAIDQAEDRELFKELCESINEPLCASDIATTVEEA 155

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IE 176
           ++    I  P +++P       G  +   ++ +   +      +   Q LIE+ + G  E
Sbjct: 156 INIADKIGYPIIVRPAFTMGGTGGGICDTEEELREIVANGLKLSPVTQCLIEESIAGYKE 215

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +   VM D++ +   I V   + +     ++  +        +  + Y+ ++  +     
Sbjct: 216 IEYEVMRDSADNA--IVVCNMENFDPVGVHTGDSIVFAPSQTLSDNEYQMLRDASLNIIH 273

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINV 264
           A+   G        DP S +   +E+N 
Sbjct: 274 ALKIEGGCNVQLALDPNSYEYRVIEVNP 301



 Score = 66.3 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 30/228 (13%), Positives = 76/228 (33%), Gaps = 19/228 (8%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYV 129
           L    +    + +     + D+   ++ +    +P  P            + + I  P +
Sbjct: 646 LSKAGVKILGTQVEDLDRAEDRDLFEKALQDLDIPQPPGATATNEEEAVANANKIGYPVL 705

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS--- 186
           I+P        + +I  ++ +   + ++   +    +L++ Y+ G E     + D     
Sbjct: 706 IRPSFVLGGRAMEIINNEKDLRDYMNRAVKASPEHPVLVDSYLQGQECEVDAICDGKEVL 765

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISR 245
           L      + ++  +S        +S  V P   +   I   +          + C G+  
Sbjct: 766 LPGIMEHIERAGVHS-------GDSMAVYPPQNLSQAIIDTIVDYTKRLAIGLNCIGMMN 818

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
             F+      +V+ +E+N +   T     P ++        +L   M+
Sbjct: 819 IQFVI--YEEQVYVIEVNPRASRT----VPFLSKVTNIPMAQLATQMI 860


>gi|114327436|ref|YP_744593.1| ribosomal protein S6 modification protein [Granulibacter
           bethesdensis CGDNIH1]
 gi|114315610|gb|ABI61670.1| ribosomal protein S6 modification protein [Granulibacter
           bethesdensis CGDNIH1]
          Length = 301

 Score = 69.0 bits (168), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 39/203 (19%), Positives = 76/203 (37%), Gaps = 23/203 (11%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ----HLISPP 127
           L  + +P   + + A    +DK  +  ++   G+P  PS  V             L+   
Sbjct: 91  LHAMGVP-VWNSVGAIERCVDKSMTSFLLQHSGLPTPPSWTVPGRDAALAIAHRELVQER 149

Query: 128 YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD--GIELTCGVMGDA 185
            V+KPL G    G+ +I + + +P            D   +++++   G       +   
Sbjct: 150 LVLKPLFGSQGKGLTMIARAEDLPP------PEEVNDVYYLQRFIPAHGRGYEDYRLFVC 203

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
             +V    + ++D +   ++  ++ S     A         +  LA  A QA+G    + 
Sbjct: 204 DGEVIAAMIRRADDWITNIRQGAIPSALTPDAD--------MCDLARRAAQAVGAT-YAG 254

Query: 246 SDFLFDPLSRKVFWLEINVQPGM 268
            D + DP   +   LE+N  PG 
Sbjct: 255 VDLIRDP-DGQYLVLEVNSMPGW 276


>gi|240169353|ref|ZP_04748012.1| acetyl-/propionyl-coenzyme A carboxylase alpha chain, AccA2
           [Mycobacterium kansasii ATCC 12478]
          Length = 661

 Score = 69.0 bits (168), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 41/214 (19%), Positives = 84/214 (39%), Gaps = 19/214 (8%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
           +G   E+    A ++   + +    + A      K+ SK+++++ GVPV     ++    
Sbjct: 80  YGFLSENADFAAAVQEAGLTWVGPPVDAVRAMGSKIESKKLMAAAGVPV-----LDELDP 134

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQLLIEQYV-D 173
           D+      P ++K   GG   G+ V+++  ++P ++  +            +  E+Y+  
Sbjct: 135 DTVTQAQLPVLVKASAGGGGRGMRVVRELSALPAEVEAARREAQSAFGDPTVFCERYLPT 194

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI---YKEVQRL 230
           G  +   V+ D    V  +   +        K          P+ +   I     ++   
Sbjct: 195 GHHVEVQVLADVHGTVWAVGERECSIQRRHQK-----IIEEAPSPLVERIPGMRAKLFDA 249

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           A LA  AIG  G    +FL D    + ++LE+N 
Sbjct: 250 ARLAASAIGYAGAGTVEFLAD-DDGEFYFLEMNT 282


>gi|212711057|ref|ZP_03319185.1| hypothetical protein PROVALCAL_02126 [Providencia alcalifaciens DSM
           30120]
 gi|212686225|gb|EEB45753.1| hypothetical protein PROVALCAL_02126 [Providencia alcalifaciens DSM
           30120]
          Length = 448

 Score = 69.0 bits (168), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 78/222 (35%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         L  DK+ +   +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAEQVEQSGFIFIGPKAETIRLMGDKVSAISAMKKAGVPCVPGSDG 136

Query: 112 ---LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
                          I  P +IK   GG   G+ V++ ++ +   +     ++ +  + D
Sbjct: 137 PLGNDTEKNKAIAKRIGFPVIIKASGGGGGRGMRVVRNEKDLESSINLTRAEAKAAFNND 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E++++    +   VM D       +A           K          PA  I  +
Sbjct: 197 MVYMEKFLENPRHVEIQVMADGQGHAIYLAERDCSMQRRHQK-----VVEEAPAPGITPE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           I + +      A   IG RG    +FLF   + + +++E+N 
Sbjct: 252 IRRHIGERCANACIEIGYRGAGTFEFLF--ENGEFYFIEMNT 291


>gi|169349445|ref|ZP_02866383.1| hypothetical protein CLOSPI_00163 [Clostridium spiroforme DSM 1552]
 gi|169293520|gb|EDS75653.1| hypothetical protein CLOSPI_00163 [Clostridium spiroforme DSM 1552]
          Length = 1072

 Score = 69.0 bits (168), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 54/312 (17%), Positives = 116/312 (37%), Gaps = 47/312 (15%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G+++  +              DV        + +  ++   +PD    
Sbjct: 29  SGTQACKALKNLGYEIVLVNSNPATIMTDPETADVTYIEPLNLKRLTQIIEKERPDALLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G    +   +     IL+   +      + A     D++  K+ ++  G+ +  S +
Sbjct: 89  NLGGQSALNLCSELNQAGILDKYNVEVLGVHVDAIERGEDRLEFKKAMNELGIEMARSEV 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     +  P V++P       G  ++   + +   + +    +  +Q LIE+
Sbjct: 149 AETVEEALAIADKLGYPVVVRPAYTMGGAGGGLVYNVEELKTIVSRGLQASLVNQCLIEE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQ 228
            + G  EL   V+ DA+ ++  +   ++      L   + +S    P   I  ++   ++
Sbjct: 209 SILGWEELEVEVVRDANNNMITVCFIEN---IDPLGVHTGDSFCSAPMLTISQEVQDRLK 265

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI--------FPE---- 276
             AF   ++IG  G +   F  DP+S ++  +EIN +   T  S         FP     
Sbjct: 266 DQAFRIVESIGVIGGTNVQFAHDPVSDRIVVIEINPR---TSRSSALASKATGFPIALVS 322

Query: 277 MAAYAGYSFREL 288
               AG +  ++
Sbjct: 323 AMLAAGLTMEDI 334



 Score = 57.4 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 29/201 (14%), Positives = 77/201 (38%), Gaps = 10/201 (4%)

Query: 68  VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-ILVN-RFTMDSQHLIS 125
           + A L+   +    +      ++ D+    +++    +P+  S + V+    ++    I 
Sbjct: 643 LAAQLKENGVNILGTTPETIDMAEDRDLFNEMMEKLEIPMPESGMAVDVEEALNIAKRIG 702

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGD 184
            P +++P       G+ V+  D+S+   +  +        +LI++++ + +E     + D
Sbjct: 703 YPLMVRPSYVLGGRGMEVVYDDESLKQYMKAAVGVTPDRPILIDRFLNNAMECEADAISD 762

Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGI 243
                    +   +           +S  +LP+K I +   + ++       + +  RG+
Sbjct: 763 GENVFVPAVMEHIELAGIHS----GDSACILPSKHISIRHLETIKEYTKKIAKEMNVRGL 818

Query: 244 SRSDFLFDPLSRKVFWLEINV 264
              +  +     KV+ LE N 
Sbjct: 819 --MNMQYAIADNKVYVLEANP 837


>gi|58427104|gb|AAW76141.1| carbamoyl-phosphate synthase large chain [Xanthomonas oryzae pv.
           oryzae KACC10331]
          Length = 1090

 Score = 69.0 bits (168), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 46/278 (16%), Positives = 102/278 (36%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL D G++V  +         D +            ++V  +++  KPD    
Sbjct: 39  SGAQACKALRDEGYRVVLVNSNPATIMTDPNMADAVYIEPINWQTVEKIISKEKPDALLP 98

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      +LE   +    +   A  ++ D+   +  +   G+    + +
Sbjct: 99  TMGGQTALNCALDLADHGVLEKYNVELIGAKREAIRMAEDRELFRVAMGEIGLDCPKAAV 158

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     ++ Q  +  P +I+P       G  +    + +   + +    +   ++L+E+
Sbjct: 159 AHTLEEALEIQTRVGYPTIIRPSFTLGGSGGGIAYNREELIEIVGRGLELSPTTEVLVEE 218

Query: 171 YVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            V G  E    V+ D + + +   A+   D           +S  V PA+ +    Y+ +
Sbjct: 219 SVLGWKEFEMEVVRDTADNCIIVCAIENLDPMGVHT----GDSITVAPAQTLTDKEYQRL 274

Query: 228 QRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F   P + +V  +E+N 
Sbjct: 275 RDASIAVLRKIGVDTGGSNVQFGISPTTGRVVVIEMNP 312



 Score = 64.4 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/223 (15%), Positives = 88/223 (39%), Gaps = 12/223 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           LE   +P   +   +  L+ D+ R +Q+V + G+   P+ +       +     I  P V
Sbjct: 664 LEANGVPVIGTSPDSIDLAEDRERFQQLVDTLGLKQPPNRIARNAEEALVLAREIGYPLV 723

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLD 188
           ++P        + ++  +  +   +  +   ++   +L+++++D  +E+   ++ D   +
Sbjct: 724 VRPSYVLGGRAMEIVYGESDLARYVRDAVKVSNDSPVLLDRFLDNAVEVDVDIIADKDGN 783

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           V    V   +       +S  +S  + P  +      E++R   +  + +   G+  + F
Sbjct: 784 VLIGGV--MEHIEEAGVHSGDSSCSLPPYSLSPQTQAELRRQVVMLAEGLNVVGLMNTQF 841

Query: 249 LF---DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
                +     V+ LE+N +   T     P ++   G    ++
Sbjct: 842 AVQVNEAGDDIVYLLEVNPRASRT----VPFVSKAIGMPLAKI 880


>gi|325265118|ref|ZP_08131844.1| carbamoyl-phosphate synthase, large subunit [Clostridium sp. D5]
 gi|324029522|gb|EGB90811.1| carbamoyl-phosphate synthase, large subunit [Clostridium sp. D5]
          Length = 1072

 Score = 69.0 bits (168), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 54/312 (17%), Positives = 116/312 (37%), Gaps = 37/312 (11%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G+++  +              DV          +  ++A  +PD    
Sbjct: 29  SGTQACKALKNLGYEIVLVNSNPATIMTDPETADVTYIEPLNVDRLEQIIAKERPDALLP 88

Query: 57  VLHGNFGEDGL----VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G  G +       + IL+  ++      + A     D++  K+ ++  G+ +  S +
Sbjct: 89  NLGGQSGLNLCSELAAEGILDKYKVEVIGVQVDAIERGEDRIEFKKAMNELGIEMARSEV 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +D    +  P V++P       G  ++     +     +    +   Q+L+E+
Sbjct: 149 AYTVEEALDIADDLGYPVVLRPAYTMGGAGGGLVYNKDELKTVCARGLQASLVGQVLVEE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQ 228
            + G  EL   V+ D   ++  +   ++      L   + +S    P   I  +  K +Q
Sbjct: 209 SILGWEELELEVVRDKENNMITVCFIEN---IDPLGVHTGDSFCSAPMLTISEECQKRLQ 265

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
             A+   +++   G +   F  DP+S ++  +EIN +   T  S     +   G+    L
Sbjct: 266 DQAYRIVESVQVIGGTNVQFAHDPVSDRIIVIEINPR---TSRSS-ALASKATGFPIA-L 320

Query: 289 LLWMVEDASCLR 300
           +  M+     L+
Sbjct: 321 VSAMLATGLTLK 332



 Score = 59.0 bits (142), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 28/196 (14%), Positives = 75/196 (38%), Gaps = 8/196 (4%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-ILVN-RFTMDSQHLISPPYV 129
           LE   +    +      L+ D+   ++++    +P+  S + VN    +     I  P +
Sbjct: 647 LEKNGVKILGTAPSVIDLAEDRDLFREMMEKLQIPMPESGMAVNVEEAISIAQNIGYPVM 706

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLD 188
           ++P       G+ V+  D+S+   +  +        +LI+++++  +E     + D +  
Sbjct: 707 VRPSYVLGGRGMEVVYDDKSMANYMAAAVGVTPDRPILIDRFLNHALECEADAISDGTHA 766

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                +   +       +S  ++  +    I  +  K ++       + +  +G+   + 
Sbjct: 767 FVPAVMEHIELAGV---HSGDSACIIPSVHISEENVKTIKDYTRKIAEEMHVKGL--MNM 821

Query: 249 LFDPLSRKVFWLEINV 264
            +   + KV+ LE N 
Sbjct: 822 QYAIENGKVYVLEANP 837


>gi|296532782|ref|ZP_06895461.1| carbamoyl-phosphate synthase, large subunit [Roseomonas cervicalis
           ATCC 49957]
 gi|296266890|gb|EFH12836.1| carbamoyl-phosphate synthase, large subunit [Roseomonas cervicalis
           ATCC 49957]
          Length = 1081

 Score = 69.0 bits (168), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 46/278 (16%), Positives = 96/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL   G++V  +         D                V  ++A  +PD    
Sbjct: 29  SGAQACKALRAEGYRVILVNSNPATIMTDPGLADATYIEPITVEMVEKIIAKERPDALLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      +LE        +       + D+++ +  ++  G+    S +
Sbjct: 89  TMGGQTALNTSLKLAEAGVLEKYGCELIGAKAEVIDKAEDRLKFRDAMTKIGIESPRSAI 148

Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +          L+  P VI+P       G  +    +     +    S +  +++LIE+
Sbjct: 149 AHTMEEARAGLELVKLPCVIRPSFTLGGTGGGIAYNREEFEQIVAAGLSASMTNEVLIEE 208

Query: 171 YVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEV 227
            V G  E    V+ D++ + +   ++   D           +S  V PA  +    Y+ +
Sbjct: 209 SVLGWKEYEMEVVRDSADNCIIVCSIENVDPMGVHT----GDSVTVAPALTLTDKEYQRM 264

Query: 228 QRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P   ++  +E+N 
Sbjct: 265 RDASIACLREIGVDTGGSNVQFGINPADGRMVVIEMNP 302



 Score = 65.9 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 51/287 (17%), Positives = 104/287 (36%), Gaps = 36/287 (12%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQA----- 70
           AL +AGF+   +         D D S  L    L  +   +++     E G V       
Sbjct: 589 ALREAGFETVMVNCNPETVSTDYDTSDRLYFEPLSAEDVISLIR-KEQEKGEVLGCIVQY 647

Query: 71  ----------ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTM 118
                      L    IP   +   A  ++ D+ R +Q++ S G+    + +V      +
Sbjct: 648 GGQTPLKLSQALHKAGIPILGTSAEAIDIAEDRERFQQLLKSLGLQQPQNGIVRTLEEAV 707

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIEL 177
           +    I  P V++P        + +    + +     ++   +  + +LI+QY+ D IE+
Sbjct: 708 EEAERIGYPVVVRPSYVLGGRAMEIAYNREQLLRFGQEAVKVSGENPILIDQYLQDAIEV 767

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
               + D    V    V   +       +S  ++  + P  +   +  E++       +A
Sbjct: 768 DVDCIADEDGQVYVAGV--MEHIEEAGIHSGDSACSLPPYSLAPSVITELKAETEAMARA 825

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
           +  RG+   +  +     ++F LE+N +   T     P +A   G  
Sbjct: 826 LKVRGL--MNVQYAVKDGEIFVLEVNPRASRT----VPFVAKATGVP 866


>gi|229157465|ref|ZP_04285542.1| Carbamoyl-phosphate synthase large chain [Bacillus cereus ATCC
           4342]
 gi|228625915|gb|EEK82665.1| Carbamoyl-phosphate synthase large chain [Bacillus cereus ATCC
           4342]
          Length = 1018

 Score = 69.0 bits (168), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 42/260 (16%), Positives = 96/260 (36%), Gaps = 13/260 (5%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMR 95
             V  ++   +PD     L G  G +  V+     +LE   +    + + A   + D+  
Sbjct: 18  EFVSRIIRKERPDAILPTLGGQTGLNMAVELAKSGVLEECGVEILGTKLSAIEQAEDRDL 77

Query: 96  SKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153
            + ++     P  PS +++         + I  P +++P       G  +   ++ +   
Sbjct: 78  FRTLMQDLNEPTPPSEIIHNLDEAYGFVNEIGYPVIVRPAFTLGGTGGGICHNEEELIEI 137

Query: 154 LLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212
           +      +   Q L+E+ + G  E+   VM D++ +   I V   +       ++  +  
Sbjct: 138 VTSGLKHSPVTQCLLEKSIAGCKEIEYEVMRDSNDNA--IVVCNMENIDPVGVHTGDSIV 195

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
                 +    Y+ ++  +    +A+G  G        DP S + + +E+N  P ++  S
Sbjct: 196 VAPSQTLSDREYQMLRNTSLRIIRALGIEGGCNVQLALDPYSFQYYVIEVN--PRVSRSS 253

Query: 273 IFPEMAAYAGYSFRELLLWM 292
                +   GY   +L   +
Sbjct: 254 --ALASKATGYPIAKLAAKI 271



 Score = 65.5 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 37/283 (13%), Positives = 100/283 (35%), Gaps = 39/283 (13%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ------ 69
           A+++AG++   I         D   S  L    L  +   +++     E  +VQ      
Sbjct: 526 AIKEAGYEAIIINNNPETVSTDFSISDKLYFEPLTIEDVMHIIDLEKPEGVIVQFGGQTA 585

Query: 70  ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHL 123
               A LE   +    + +     + D+ + +  ++  G+P             +     
Sbjct: 586 INLAAKLEEHGVKILGTSLEDLDRAEDRDKFEAALTKLGIPQPVGKTATTVEQAVAIAEE 645

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + ++ + + +   +  +   +    +LI++Y+ G E+    + 
Sbjct: 646 IGYPVLVRPSYVLGGRAMEIVYRQEELLHYMKNAVKVHADHPVLIDRYMVGKEIEVDAIS 705

Query: 184 DAS---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIG 239
           D     +      + ++  +S        +S  V P + +   + +++        + + 
Sbjct: 706 DGENVFIPGIMEHIERAGVHS-------GDSIGVYPPQSLSEKLKEQIIEHTIALGKGLN 758

Query: 240 CRGISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277
             G+    F+      +V+ +E+N       P ++ ++  P  
Sbjct: 759 IVGLLNIQFVVFK--DQVYVIEVNPRASRTVPFLSKITGVPMA 799


>gi|229197998|ref|ZP_04324712.1| Carbamoyl-phosphate synthase large chain [Bacillus cereus m1293]
 gi|228585477|gb|EEK43581.1| Carbamoyl-phosphate synthase large chain [Bacillus cereus m1293]
          Length = 1018

 Score = 69.0 bits (168), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 42/260 (16%), Positives = 96/260 (36%), Gaps = 13/260 (5%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMR 95
             V  ++   +PD     L G  G +  V+     +LE   +    + + A   + D+  
Sbjct: 18  EFVSRIIRKERPDAILPTLGGQTGLNMAVELAKSGVLEECGVEILGTKLSAIEQAEDRDL 77

Query: 96  SKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153
            + ++     P  PS +++         + I  P +++P       G  +   ++ +   
Sbjct: 78  FRTLMQDLNEPTPPSEIIHNLDEAYGFVNEIGYPVIVRPAFTLGGTGGGICHNEEELIEI 137

Query: 154 LLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212
           +      +   Q L+E+ + G  E+   VM D++ +   I V   +       ++  +  
Sbjct: 138 VTSGLKHSPVTQCLLEKSIAGCKEIEYEVMRDSNDNA--IVVCNMENIDPVGVHTGDSIV 195

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
                 +    Y+ ++  +    +A+G  G        DP S + + +E+N  P ++  S
Sbjct: 196 VAPSQTLSDREYQMLRNTSLRIIRALGIEGGCNVQLALDPYSFQYYVIEVN--PRVSRSS 253

Query: 273 IFPEMAAYAGYSFRELLLWM 292
                +   GY   +L   +
Sbjct: 254 --ALASKATGYPIAKLAAKI 271



 Score = 66.3 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 37/283 (13%), Positives = 100/283 (35%), Gaps = 39/283 (13%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ------ 69
           A+++AG++   I         D   S  L    L  +   +++     E  +VQ      
Sbjct: 526 AIKEAGYEAIIINNNPETVSTDFSISDKLYFEPLTIEDVMHIIDLEKPEGVIVQFGGQTA 585

Query: 70  ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHL 123
               A LE   +    + +     + D+ + +  ++  G+P             +     
Sbjct: 586 INLAAKLEEHGVKILGTSLEDLDRAEDRDKFEAALTKLGIPQPVGKTATTVEQAVAIAEE 645

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + ++ + + +   +  +   +    +LI++Y+ G E+    + 
Sbjct: 646 IGYPVLVRPSYVLGGRAMEIVYRQEELLHYMKNAVKVHADHPVLIDRYMVGKEIEVDAIS 705

Query: 184 DAS---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIG 239
           D     +      + ++  +S        +S  V P + +   + +++        + + 
Sbjct: 706 DGENVFIPGIMEHIERAGVHS-------GDSIGVYPPQSLSEKLKEQIIEHTIALGKGLN 758

Query: 240 CRGISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277
             G+    F+      +V+ +E+N       P ++ ++  P  
Sbjct: 759 IVGLLNIQFVV--FEDQVYVIEVNPRASRTVPFLSKITGVPMA 799


>gi|220935084|ref|YP_002513983.1| acetyl-CoA carboxylase, biotin carboxylase [Thioalkalivibrio sp.
           HL-EbGR7]
 gi|219996394|gb|ACL72996.1| acetyl-CoA carboxylase, biotin carboxylase [Thioalkalivibrio sp.
           HL-EbGR7]
          Length = 472

 Score = 69.0 bits (168), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 40/250 (16%), Positives = 87/250 (34%), Gaps = 23/250 (9%)

Query: 32  KVSQIDVDRSVGLVLAHLKPDLAF----NVLHGNFG---EDGLVQAILELLEIPYTHSGI 84
           +   I  D   G +  H   ++A     + +H  +G   E+           + +     
Sbjct: 47  EAYSIGPDSLAGYLNVHRMVNVARAVGCDAIHPGYGFLSENPQFARTCAQRGVRFIGPSA 106

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSLG 140
                  DK+++++ + + GVPV P    N  ++D        I  P ++K   GG   G
Sbjct: 107 EVIHAMGDKVQARRSMIAAGVPVVPGSEGNLASVDEALALAEQIGFPVMLKATTGGGGRG 166

Query: 141 IIVIKKDQSIPLDLL----QSSSWNHGDQLLIEQY-VDGIELTCGVMGDASLDVTEIAVP 195
           I        +  +      +++      ++ +E+  ++   +   V+ D+  +   +   
Sbjct: 167 IRRCDDPAQLRSNYERVRSEATKAFGNTEIFMEKAIINPRHIEVQVLADSHGNAIHLFER 226

Query: 196 KSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
                    K        + P  ++       V  LA  A +A+G       +FL D   
Sbjct: 227 DCSIQRRHQKL-----VEIAPSPQLSDAQRAYVGELAVRAARAVGYENAGTVEFLMDHED 281

Query: 255 RKVFWLEINV 264
              +++E+N 
Sbjct: 282 N-FYFMEMNT 290


>gi|212702278|ref|ZP_03310406.1| hypothetical protein DESPIG_00289 [Desulfovibrio piger ATCC 29098]
 gi|212674271|gb|EEB34754.1| hypothetical protein DESPIG_00289 [Desulfovibrio piger ATCC 29098]
          Length = 1105

 Score = 69.0 bits (168), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 46/278 (16%), Positives = 98/278 (35%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G++V  +         D              +++  ++   +PD    
Sbjct: 54  SGSQAVKALKEEGYEVVLVNSNPATIMTDPHMADATYIEPIEQQTLAAIIRKERPDALLP 113

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G    +  +      +L    +    +       +  +   +Q + + G+ V  S +
Sbjct: 114 TLGGQTALNAALGLAKSGVLAECGVELIGARAEVIEKAESRELFRQAMENIGLKVPASGI 173

Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +          ++  P +I+P       G  +      +        S +   +++IEQ
Sbjct: 174 AHNMDEVRALGDVLPFPLIIRPAFTLGGTGGGIAYNMADLEEVAGHGLSASPVSEVMIEQ 233

Query: 171 YVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            V G  E    VM D + + V   ++   D           +S  V PA+ +    Y+ +
Sbjct: 234 SVLGWKEFEMEVMRDKNDNCVIVCSIENVDAMGVHT----GDSITVAPAQTLTDAEYQMM 289

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +F   + IG   G S   F  +P + ++  +E+N 
Sbjct: 290 RDASFAIMREIGVETGGSNVQFGINPDNGEMVVIEMNP 327



 Score = 55.1 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 47/262 (17%), Positives = 89/262 (33%), Gaps = 27/262 (10%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ------ 69
           AL DAG     +         D D S  L    L  +   N++     E  +VQ      
Sbjct: 617 ALRDAGIMAIMVNSNPETVSTDYDTSDRLYFEPLTFEDVMNIVEKEKPEGVIVQFGGQTP 676

Query: 70  ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQHL 123
                 L    +P   +   A   + D+ R + ++   G+   P+         ++    
Sbjct: 677 LNLAVPLMRAGVPILGTSPDAIDRAEDRERFQALIEKLGLLQPPNGTAMDLDQALEVAER 736

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I+ P V++P        + V+   + +     +         +LI+++++       V  
Sbjct: 737 ITYPVVVRPSYVLGGRAMAVVYDKEELVDYFREQVPEKPEHPILIDKFLE---HAVEVDV 793

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRG 242
           DA  D  E+ V     +  E    S +S  VLP+  +  D    +   A    + +   G
Sbjct: 794 DALSDGKEVYVAGIMEHIEEAGIHSGDSACVLPSFSLSYDHVALIAAQAEALARELKVVG 853

Query: 243 ISRSDFLFDPLSRKVFWLEINV 264
           +    F        ++ LE+N 
Sbjct: 854 LMNIQFAI--KGDDLYILEVNP 873


>gi|312877050|ref|ZP_07737023.1| phosphoribosylaminoimidazole carboxylase, ATPase subunit
           [Caldicellulosiruptor lactoaceticus 6A]
 gi|311796191|gb|EFR12547.1| phosphoribosylaminoimidazole carboxylase, ATPase subunit
           [Caldicellulosiruptor lactoaceticus 6A]
          Length = 403

 Score = 69.0 bits (168), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 42/208 (20%), Positives = 76/208 (36%), Gaps = 30/208 (14%)

Query: 69  QAILELLEIPY-THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPP 127
           Q + +L +  Y  +       +  DK + KQ+  +  +PV     V    +        P
Sbjct: 104 QVLKDLYDKGYQIYPSPYCLEIIQDKYKQKQMFKNANLPVPRFEKVTHLDVSFFEKFGFP 163

Query: 128 YVIKPLKGG-SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM---- 182
            V K  KGG    G++VIK  + +   L   S         +E+ VD I+    VM    
Sbjct: 164 CVQKSSKGGYDGRGVVVIKGKEDLNKVLKTES--------FVEELVD-IKNELAVMVARN 214

Query: 183 --GD-ASLDVTEIA-VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             GD  S  V E+     ++   +           V PA+I   I ++ + +A    + +
Sbjct: 215 KRGDIKSYPVVEMVFEQSANILDF----------LVAPARIDEKIAQKAKEIAIKVVEVL 264

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQP 266
              G+   +        ++   E+  +P
Sbjct: 265 DGVGVFGVELFLTK-DDEILINEVAPRP 291


>gi|296158834|ref|ZP_06841663.1| Carbamoyl-phosphate synthase L chain ATP-binding [Burkholderia sp.
           Ch1-1]
 gi|295891039|gb|EFG70828.1| Carbamoyl-phosphate synthase L chain ATP-binding [Burkholderia sp.
           Ch1-1]
          Length = 681

 Score = 69.0 bits (168), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 79/221 (35%), Gaps = 18/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E   + +      I +             K+ SK++    GVP  P    
Sbjct: 77  AIHPGYGFLSESTQLVSRCAEHGIAWIGPRGDVIERMGSKIESKRIAVDAGVPCVPGYHG 136

Query: 114 N----RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGDQ 165
           +       ++    I  P +IK   GG   G+  +         L     ++      D+
Sbjct: 137 DNQKLEHLLEQARAIGAPLLIKASAGGGGKGMRRVDDLDDFAAQLSMAKQEALRAFGDDR 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFY-SYELKYSSLNSTHVLPAKIPLDI 223
           +LIE+ +     L   + GD   ++  +   +     +Y+  +    + H+ PA     +
Sbjct: 197 VLIEKLILRPRHLEVQLAGDRHGNLVHLFERECSIQRNYQKVFEEAPAPHLAPA-----V 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +++   A     AIG   +   +F+    +   ++LE+N 
Sbjct: 252 REKLLDAATKLGNAIGYDSLGTVEFVLAEDADTPYFLEMNT 292


>gi|169827040|ref|YP_001697198.1| carbamoyl-phosphate synthase pyrimidine-specific large chain
           [Lysinibacillus sphaericus C3-41]
 gi|226700934|sp|B1HQC1|CARB_LYSSC RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|168991528|gb|ACA39068.1| Carbamoyl-phosphate synthase pyrimidine-specific large chain
           [Lysinibacillus sphaericus C3-41]
          Length = 1065

 Score = 69.0 bits (168), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 56/302 (18%), Positives = 116/302 (38%), Gaps = 37/302 (12%)

Query: 20  KACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFNVL 58
           +AC S L++ G++V  I+ + +                     V  +L   +PD     L
Sbjct: 32  QACLS-LKEEGYRVILINSNPATIMTDTEIADKVYIEPISLDFVSRILRKERPDAILPTL 90

Query: 59  HGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
            G  G +  ++     IL+ L I    + + A   + D+   + ++   G PV  S +++
Sbjct: 91  GGQTGLNMAIELDKSGILDELGIEILGTKLDAIHKAEDRDLFRNLMYELGAPVPESDIIH 150

Query: 115 RFTMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                 + +  I  P +++P       G  +   DQ +   +     ++   Q L+E+ +
Sbjct: 151 SLDEAKRFVVKIGYPVIVRPAFTLGGTGGGICYNDQDLEEIVTSGLKYSPVTQCLLEKSI 210

Query: 173 DG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRL 230
            G  E+   VM DA  +   I V   +     +   + +S  V P + +     + ++ +
Sbjct: 211 AGYKEIEYEVMRDAVDNA--IVVCNMENVD-PVGIHTGDSIVVAPTQTLSDRENQMLRNI 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    +A+   G        DP S   + +E+N  P ++  S     +   GY   +L  
Sbjct: 268 SLDIIRALKIEGGCNVQLALDPYSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325



 Score = 62.4 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 20/214 (9%), Positives = 72/214 (33%), Gaps = 14/214 (6%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC--PSILVNRFTMDSQHLISPPYV 129
           L    +    + +     + ++ + +Q +    +P     + +     +     +  P +
Sbjct: 646 LAANGVKILGTSLEDIDRAENRDKFEQALRDLNIPQPQGETAVSTVEALAIGERLGFPVL 705

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           ++P        + ++   + +   +  +   +    +L+++Y+ G E+    + D    +
Sbjct: 706 VRPSYVLGGRAMEIVYNQEELQHYMENAVEASPDHPVLVDRYLTGQEIEVDAICDGEHVL 765

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               +   +           +S  V P + +       +        + +G  G+    +
Sbjct: 766 IPGIMEHIERAGVHS----GDSISVYPPQKLTQYQKDTLVDYTTRLAKGLGIVGLMNIQY 821

Query: 249 LFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277
           +      +V+ +E+N       P ++ ++  P  
Sbjct: 822 VISQ--GEVYVIEVNPRSSRTVPFLSKITNIPMA 853


>gi|307132640|ref|YP_003884656.1| carbamoyl-phosphate synthase large subunit [Dickeya dadantii 3937]
 gi|306530169|gb|ADN00100.1| carbamoyl-phosphate synthase large subunit [Dickeya dadantii 3937]
          Length = 1074

 Score = 69.0 bits (168), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 44/278 (15%), Positives = 96/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D +              V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +    Q +LE   +    +   A   + D+ R    +   G+    S +
Sbjct: 89  TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDIAMKKIGLETARSGI 148

Query: 113 VNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     +     +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHNMDEALAVAADVGYPCIIRPSFTMGGTGGGIAYNREEFEEICTRGLDLSPTKELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + + +   ++   D           +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENLDAMGIHT----GDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RNASMAVLREIGVETGGSNVQFAVNPKTGRLIVIEMNP 302



 Score = 61.3 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 33/197 (16%), Positives = 77/197 (39%), Gaps = 10/197 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL--ISPPYV 129
           LE   +P   +   A   + D+ R +Q V+  G+    +  V+      +    I  P V
Sbjct: 654 LEAAGVPVIGTSPDAIDRAEDRERFQQAVNRLGLKQPANATVSTIDQAVEKAVGIGYPLV 713

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  +  +      + S ++   +L+++++ D +E+    + D    
Sbjct: 714 VRPSYVLGGRAMEIVYDEVDLRRYFQTAVSVSNDAPVLLDRFLDDAVEVDVDAICDGERV 773

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           +    +   +    +    S +S   LPA  +  DI   ++R        +  RG+    
Sbjct: 774 LIGGIMEHIE----QAGVHSGDSACSLPAYTLSKDIQDVMRRQVEKLAFELSVRGLMNVQ 829

Query: 248 FLFDPLSRKVFWLEINV 264
           F     + +V+ +E+N 
Sbjct: 830 FAV--KNNEVYLIEVNP 844


>gi|167824122|ref|ZP_02455593.1| argininosuccinate lyase [Burkholderia pseudomallei 9]
 gi|167910868|ref|ZP_02497959.1| argininosuccinate lyase [Burkholderia pseudomallei 112]
          Length = 424

 Score = 69.0 bits (168), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 46/234 (19%), Positives = 87/234 (37%), Gaps = 29/234 (12%)

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYVIKP 132
           L +P   +   A     DK R  + +   GV V  + +V+  T   D  H  + P V+KP
Sbjct: 97  LGLP--AADPEAIRTCRDKGRLHRRLRDAGVGVADTEIVSERTQLRDLAHGATYPRVLKP 154

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ-------LLIEQYVDGIELTCGVMGDA 185
             G  S+G+ +++    +     +       ++       +L++ +VDG E +  V+G  
Sbjct: 155 AFGSGSVGVRLVRTPAEMLAHGERMLDARGNERGIALARQVLVQSFVDGPEFSVEVVGLG 214

Query: 186 S---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR- 241
           +     V  +         +      + + H  PA I       +      A  A+G R 
Sbjct: 215 AEHGHAVLGVTGKHLGPLPH-----FVEAGHDFPAPIAAAQRDAIVAETLRALDAVGHRF 269

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA-YAGYSFRELLLWMVE 294
           G +  +        KV  +EIN +       + P+      G    ++L  M++
Sbjct: 270 GPAHVECRV--SGGKVVVIEINPR---LAGGMIPQAIEWATGV---DVLGAMID 315


>gi|156740980|ref|YP_001431109.1| carbamoyl-phosphate synthase L chain ATP-binding [Roseiflexus
           castenholzii DSM 13941]
 gi|156232308|gb|ABU57091.1| Carbamoyl-phosphate synthase L chain ATP-binding [Roseiflexus
           castenholzii DSM 13941]
          Length = 659

 Score = 69.0 bits (168), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 80/220 (36%), Gaps = 16/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E            + +      A     DK+ ++++  + GVP+ P    
Sbjct: 77  AIHPGYGFLAERATFARACRDAGLTFVGPPPEAIEALGDKIAARRLALAAGVPIAPGYHG 136

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
              + +        I  P +IK   GG   G+ ++++   +P  +     ++ +    D 
Sbjct: 137 ADQSDETLAREAERIGFPLLIKASAGGGGRGMRIVQRADDLPAAVESARREARAAFGDDT 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+ +     +   ++ D+  +   +   +        K    + + VL A+      
Sbjct: 197 IFLEKLLARPRHIEVQILADSHGNYVYLFERECSIQRRHQKIVEESPSPVLTAR----QR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +   A    +A G      ++FL+D       +LE+N 
Sbjct: 253 EMIGEAAVRLARAAGYVNAGTAEFLYDETDGSFAFLEVNT 292


>gi|229092932|ref|ZP_04224065.1| Carbamoyl-phosphate synthase large chain [Bacillus cereus Rock3-42]
 gi|228690436|gb|EEL44220.1| Carbamoyl-phosphate synthase large chain [Bacillus cereus Rock3-42]
          Length = 1018

 Score = 69.0 bits (168), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 42/260 (16%), Positives = 96/260 (36%), Gaps = 13/260 (5%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMR 95
             V  ++   +PD     L G  G +  V+     +LE   +    + + A   + D+  
Sbjct: 18  EFVSRIIRKERPDAILPTLGGQTGLNMAVELAKSGVLEECGVEILGTKLSAIEQAEDRDL 77

Query: 96  SKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153
            + ++     P  PS +++         + I  P +++P       G  +   ++ +   
Sbjct: 78  FRTLMQDLNEPTPPSEIIHNLDEAYGFVNEIGYPVIVRPAFTLGGTGGGICHNEEELIEI 137

Query: 154 LLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212
           +      +   Q L+E+ + G  E+   VM D++ +   I V   +       ++  +  
Sbjct: 138 VTSGLKHSPVTQCLLEKSIAGCKEIEYEVMRDSNDNA--IVVCNMENIDPVGVHTGDSIV 195

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
                 +    Y+ ++  +    +A+G  G        DP S + + +E+N  P ++  S
Sbjct: 196 VAPSQTLSDREYQMLRNTSLRIIRALGIEGGCNVQLALDPYSFQYYVIEVN--PRVSRSS 253

Query: 273 IFPEMAAYAGYSFRELLLWM 292
                +   GY   +L   +
Sbjct: 254 --ALASKATGYPIAKLAAKI 271



 Score = 62.8 bits (152), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 36/283 (12%), Positives = 99/283 (34%), Gaps = 39/283 (13%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ------ 69
           A+++AG++   I         D   S  L    L  +   +++     E  +VQ      
Sbjct: 526 AIKEAGYEAIIINNNPETVSTDFSISDKLYFEPLTIEDVMHIIDLEKPEGVIVQFGGQTA 585

Query: 70  ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHL 123
               A LE   +    + +     + D+ + +  ++   +P             +     
Sbjct: 586 INLAAKLEAHGVKILGTSLEDLDRAEDRDKFEAALTKLAIPQPVGKTATTVEQAVAIAEE 645

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + ++ + + +   +  +   +    +LI++Y+ G E+    + 
Sbjct: 646 IGYPVLVRPSYVLGGRAMEIVYRQEELLHYMKNAVKVHADHPVLIDRYMVGKEIEVDAIS 705

Query: 184 DAS---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIG 239
           D     +      + ++  +S        +S  V P + +   + +++        + + 
Sbjct: 706 DGENVFIPGIMEHIERAGVHS-------GDSIGVYPPQSLSEKLKEQIIEHTIALGKGLN 758

Query: 240 CRGISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277
             G+    F+      +V+ +E+N       P ++ ++  P  
Sbjct: 759 IVGLLNIQFVVFK--DQVYVIEVNPRASRTVPFLSKITGVPMA 799


>gi|261344926|ref|ZP_05972570.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Providencia
           rustigianii DSM 4541]
 gi|282567067|gb|EFB72602.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Providencia
           rustigianii DSM 4541]
          Length = 448

 Score = 69.0 bits (168), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 78/222 (35%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         L  DK+ +   +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAEQVEQSGFIFIGPRAETIRLMGDKVSAISAMKKAGVPCVPGSDG 136

Query: 112 ---LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
                     +    I  P +IK   GG   G+ V++  + +   +     ++ +  + D
Sbjct: 137 PLGNDTEKNKEIAKRIGFPVIIKASGGGGGRGMRVVRNAKDLESSINLTRAEAKAAFNND 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+Y++    +   VM D       +A           K          PA  I  +
Sbjct: 197 MVYMEKYLENPRHVEIQVMADGQGHAVYLAERDCSMQRRHQK-----VVEEAPAPGITPE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           I + +      A   IG RG    +FL+   + + +++E+N 
Sbjct: 252 IRRNIGERCANACIEIGYRGAGTFEFLY--ENGEFYFIEMNT 291


>gi|163737752|ref|ZP_02145169.1| carbamoyl-phosphate synthase, large subunit [Phaeobacter
           gallaeciensis BS107]
 gi|161389278|gb|EDQ13630.1| carbamoyl-phosphate synthase large chain [Phaeobacter gallaeciensis
           BS107]
          Length = 1119

 Score = 69.0 bits (168), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 49/270 (18%), Positives = 101/270 (37%), Gaps = 34/270 (12%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAI---- 71
           AL DAG++   I         D D S  L    L  +    +L     E+G +  +    
Sbjct: 607 ALTDAGYETIMINCNPETVSTDYDTSDRLYFEPLTFEHVMEILTKEL-ENGTLHGVIVQF 665

Query: 72  -----------LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTM 118
                      LE   IP   +   A  L+ D+ R + +V+  G+    + +   +   +
Sbjct: 666 GGQTPLKLANALEEEGIPILGTSPDAIDLAEDRERFQALVNQLGLKQPHNGIASTDAQAL 725

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           +    I  P VI+P        + +++    +   + ++   +    +L++ Y+ G    
Sbjct: 726 EIAEEIGFPLVIRPSYVLGGRAMEIVRDMDQLKRYIAEAVVVSGDSPVLLDSYLSG---A 782

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELK-YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
             +  DA  D TE+ V     +  E   +S  ++  + P  +  ++  EV+       +A
Sbjct: 783 VELDVDAICDGTEVHVAGIMQHIEEAGVHSGDSACSLPPYSLSKEVIAEVKTQTNALAKA 842

Query: 238 IGCRGISRSDFLFDPLSRK---VFWLEINV 264
           +   G+    F   P +     ++ +E+N 
Sbjct: 843 LNVVGLMNIQFAVKPDADGKDVIYLIEVNP 872



 Score = 48.6 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 42/291 (14%), Positives = 96/291 (32%), Gaps = 48/291 (16%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D                V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPGLADATYIEPITPEVVAKIIEKERPDALLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G  G +  +      +L   ++    +   A  ++ D+   ++ +   G+    + +
Sbjct: 89  TMGGQTGLNTALALEEMGVLAKFDVEMIGAKREAIEMAEDRKLFREAMDRLGLENPRATI 148

Query: 113 VN---------------RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
           +                +  +D    I  P +I+P       G  V    +         
Sbjct: 149 ITAPKKDNGNADLDAGVQMALDELEDIGLPAIIRPAFTLGGTGGGVAYNREDYIHFCRSG 208

Query: 158 SSWNHGDQLLIEQYVDG-IELTCGVMGDASL-DVTEIAVPKSDFYSYELKYSSLNSTHVL 215
              +  +Q+L+++ + G  E    V+ D +   +   ++   D           +S  V 
Sbjct: 209 MDASPVNQILVDESLLGWKEYEMEVVRDTADNAIIVCSIENIDPMGVHT----GDSITVA 264

Query: 216 PA-KIPLDIYKEVQRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           PA  +    Y+ ++  +    + IG   G S   +  +P   ++  +E+N 
Sbjct: 265 PALTLTDKEYQMMRSASIAVLREIGVETGGSNVQWAVNPADGRMVVIEMNP 315


>gi|297153655|gb|ADI03367.1| pyruvate carboxylase [Streptomyces bingchenggensis BCW-1]
          Length = 1124

 Score = 69.0 bits (168), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 41/216 (18%), Positives = 80/216 (37%), Gaps = 17/216 (7%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC----PSILVN 114
           +G   E+  +    E   I +   G     L+ +K R+     + GVPV     PS  V+
Sbjct: 83  YGFLSENPDLARACEEAGITFVGPGAEILELTGNKARAVAAARAAGVPVLGSSQPSTDVD 142

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK----DQSIPLDLLQSSSWNHGDQLLIEQ 170
                ++  +  P  +K + GG   G+  ++      +SI     +++S      + +E+
Sbjct: 143 ELVQAAEE-LGFPVFVKAVAGGGGRGMRRVEDRRTLRESIEAASREAASAFGDPTVFLEK 201

Query: 171 Y-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQ 228
             V+   +   ++ DA  +V              ++        + PA  +  ++   + 
Sbjct: 202 AVVEPRHIEVQILADAQGNVM-----HLFERDCSVQRRHQKVIELAPAPNLDPELRTRIC 256

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             A    + IG R     +FL D     VF  E+N 
Sbjct: 257 DDAVRFARQIGYRNAGTVEFLLDRAGNHVFI-EMNP 291


>gi|296127751|ref|YP_003635003.1| ATP-dependent carboxylate-amine ligase domain protein ATP-grasp
           [Brachyspira murdochii DSM 12563]
 gi|296019567|gb|ADG72804.1| ATP-dependent carboxylate-amine ligase domain protein ATP-grasp
           [Brachyspira murdochii DSM 12563]
          Length = 723

 Score = 69.0 bits (168), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 32/191 (16%), Positives = 78/191 (40%), Gaps = 9/191 (4%)

Query: 67  LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQHLI 124
            V A+   L +P   +    +  + +K+R ++      VP      V  +   +D+   +
Sbjct: 84  TVAAVANALGLP--GNRFEDAYAASNKIRMRERFKKNNVPQPNFFPVWNYDEAIDAYRHL 141

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
           + P V+KP     + G++ +  +  I     ++ S +   +++IE+++DG EL+  ++  
Sbjct: 142 NTPVVVKPADNMGARGVMKVSNENDILAAFNRAKSASPSGEVIIEEFMDGPELSIDMLIY 201

Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR-GI 243
                 EI V        E     + + H++P+ +  +   +   +     +A+  + G 
Sbjct: 202 ND----EIYVTGVADRIIEFPPFFIETGHIMPSALEKEKLDDAVNVMKAGIKALNLKIGA 257

Query: 244 SRSDFLFDPLS 254
           ++ D       
Sbjct: 258 AKGDIKVTKNG 268


>gi|161898980|ref|YP_201526.2| carbamoyl phosphate synthase large subunit [Xanthomonas oryzae pv.
           oryzae KACC10331]
 gi|188575984|ref|YP_001912913.1| carbamoyl phosphate synthase large subunit [Xanthomonas oryzae pv.
           oryzae PXO99A]
 gi|188520436|gb|ACD58381.1| carbamoyl-phosphate synthase, large subunit [Xanthomonas oryzae pv.
           oryzae PXO99A]
          Length = 1080

 Score = 69.0 bits (168), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 46/278 (16%), Positives = 102/278 (36%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL D G++V  +         D +            ++V  +++  KPD    
Sbjct: 29  SGAQACKALRDEGYRVVLVNSNPATIMTDPNMADAVYIEPINWQTVEKIISKEKPDALLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      +LE   +    +   A  ++ D+   +  +   G+    + +
Sbjct: 89  TMGGQTALNCALDLADHGVLEKYNVELIGAKREAIRMAEDRELFRVAMGEIGLDCPKAAV 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     ++ Q  +  P +I+P       G  +    + +   + +    +   ++L+E+
Sbjct: 149 AHTLEEALEIQTRVGYPTIIRPSFTLGGSGGGIAYNREELIEIVGRGLELSPTTEVLVEE 208

Query: 171 YVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            V G  E    V+ D + + +   A+   D           +S  V PA+ +    Y+ +
Sbjct: 209 SVLGWKEFEMEVVRDTADNCIIVCAIENLDPMGVHT----GDSITVAPAQTLTDKEYQRL 264

Query: 228 QRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F   P + +V  +E+N 
Sbjct: 265 RDASIAVLRKIGVDTGGSNVQFGISPTTGRVVVIEMNP 302



 Score = 64.0 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/223 (15%), Positives = 88/223 (39%), Gaps = 12/223 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           LE   +P   +   +  L+ D+ R +Q+V + G+   P+ +       +     I  P V
Sbjct: 654 LEANGVPVIGTSPDSIDLAEDRERFQQLVDTLGLKQPPNRIARNAEEALVLAREIGYPLV 713

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLD 188
           ++P        + ++  +  +   +  +   ++   +L+++++D  +E+   ++ D   +
Sbjct: 714 VRPSYVLGGRAMEIVYGESDLARYVRDAVKVSNDSPVLLDRFLDNAVEVDVDIIADKDGN 773

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           V    V   +       +S  +S  + P  +      E++R   +  + +   G+  + F
Sbjct: 774 VLIGGV--MEHIEEAGVHSGDSSCSLPPYSLSPQTQAELRRQVVMLAEGLNVVGLMNTQF 831

Query: 249 LF---DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
                +     V+ LE+N +   T     P ++   G    ++
Sbjct: 832 AVQVNEAGDDIVYLLEVNPRASRT----VPFVSKAIGMPLAKI 870


>gi|325569894|ref|ZP_08145888.1| acetyl-CoA carboxylase, biotin carboxylase [Enterococcus
           casseliflavus ATCC 12755]
 gi|325157017|gb|EGC69185.1| acetyl-CoA carboxylase, biotin carboxylase [Enterococcus
           casseliflavus ATCC 12755]
          Length = 454

 Score = 69.0 bits (168), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 79/220 (35%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  FG   E+    A+ E   I +            +K+ +++++    VPV P    
Sbjct: 77  AIHPGFGFLSENSRFAAMCEECNIVFIGPKSETIDAMGNKINARRLMIEAEVPVIPGSKG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSWNHGDQ 165
            I      +     I  P ++K   GG   GI  +   +++P        ++ +    D+
Sbjct: 137 AISDVEEALTIAEEIGYPVMLKAAAGGGGKGIRKVADKEALPHHFASAQQEAKAAFGNDE 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+ +     +   V+GD+  ++  +            K             I     
Sbjct: 197 MYIEKIIYPARHIEVQVLGDSFGNIIHLGERDCSLQRNNQKVL----EESPSVVISESKR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            E+   A  A QA+G R     +FL    +   +++E+N 
Sbjct: 253 AELGEAAVRAAQAVGYRNAGTIEFLM-ADTGAFYFMEMNT 291


>gi|301632899|ref|XP_002945517.1| PREDICTED: cyanophycin synthetase-like [Xenopus (Silurana)
           tropicalis]
          Length = 582

 Score = 69.0 bits (168), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 26/105 (24%), Positives = 51/105 (48%), Gaps = 5/105 (4%)

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIV-IK 145
           ++ DK  +K+++++CGVPV    +V       +    I  P  +KP  G  + G+ + + 
Sbjct: 294 IAQDKDFTKRLLAACGVPVPEGRVVAHAEEAWEVAQDIGGPVTVKPSDGNHARGVTLELT 353

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190
            +  I      +     G ++++EQ++DGIE    V+G   +  T
Sbjct: 354 GEAEIKAAFALAEP--EGSEVIVEQFIDGIEHRLLVVGGKVVAAT 396


>gi|295399122|ref|ZP_06809104.1| acetyl-CoA carboxylase, biotin carboxylase [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|294978588|gb|EFG54184.1| acetyl-CoA carboxylase, biotin carboxylase [Geobacillus
           thermoglucosidasius C56-YS93]
          Length = 450

 Score = 69.0 bits (168), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 84/221 (38%), Gaps = 18/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     +     I +      A      K  +++ +   GVP+ P    
Sbjct: 77  AIHPGYGFLAENAAFAELCRECNITFIGPSPEAITKMGIKDVARETMREAGVPIVPGSQG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGD 164
            I      +   + I  P +IK   GG   GI V + +Q +   +       ++++    
Sbjct: 137 IIESVDEAVALANEIGYPVIIKATAGGGGKGIRVARNEQELVKGINITQQEAATAFG-NP 195

Query: 165 QLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            + IE+Y++    +   V+ D+  +V  +            K             +  + 
Sbjct: 196 GVYIEKYIEDFRHVEIQVLADSYGNVIHLGERDCSIQRRLQK----LVEEAPSPALDEET 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +++ + A  A +A+   G    +F+FD  ++K +++E+N 
Sbjct: 252 RQKMGQAAVQAARAVNYTGAGTVEFIFDYRAKKFYFMEMNT 292


>gi|284166554|ref|YP_003404833.1| carbamoyl-phosphate synthase, large subunit [Haloterrigena
           turkmenica DSM 5511]
 gi|284016209|gb|ADB62160.1| carbamoyl-phosphate synthase, large subunit [Haloterrigena
           turkmenica DSM 5511]
          Length = 1074

 Score = 69.0 bits (168), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 44/276 (15%), Positives = 94/276 (34%), Gaps = 36/276 (13%)

Query: 18  SGKACASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLV 68
           S  A   AL D G +   +         D D S GL    +  +   +V     G DG++
Sbjct: 600 SVHAV-QALRDMGIEAHVVNNNPETVSTDYDTSDGLFFEPITAEEVADVAEAT-GADGVM 657

Query: 69  QAI---------------LELLEIPYT--HSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
                             LE   +  T   + + A  L+ D+ R   ++   G+      
Sbjct: 658 VQFGGQTSVNIGEPLEDELERRGLDCTVMGTSVEAMDLAEDRDRFNALMDDLGIAQPEGG 717

Query: 112 LVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
             +     M   H I  P +++P        + V+  D  +   + ++   +    +L++
Sbjct: 718 AAHSKEEAMQLAHEIGYPVLVRPSYVLGGRAMDVVYDDAELETYIEEAVRVSPDKPILVD 777

Query: 170 QYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
            ++ D +EL    + D    +    +   +       +S  ++  + P  +  +  + V+
Sbjct: 778 DFLEDAVELDVDAVADGEDVLIGGVMEHVEAAGV---HSGDSACMIPPRSLDDETLERVR 834

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +      A+   G+   +        +V+ LE N 
Sbjct: 835 EVTEDIATALDTVGL--LNVQLAVRDGEVYVLEANP 868



 Score = 57.1 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 48/306 (15%), Positives = 104/306 (33%), Gaps = 55/306 (17%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQID---------------------VDRSVGLV 45
           G ++E + S   G     AL++ G +V  ++                        ++  +
Sbjct: 28  GQAAEFDYS---GAQACRALQEEGARVVLVNSNPATIMTDPEMADRVYIEPITTEAIAEI 84

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   +PD     L G  G +   +     +LE  ++    + +     + D+   +Q + 
Sbjct: 85  IRKEQPDGVIAGLGGQTGLNVTAELAEEGVLEEYDVDIMGTPLDTIYATEDRDLFRQRME 144

Query: 102 SCGVPVCPSILV-----------------NRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
             G PV  S  +                  R     + +   P + +        G  V+
Sbjct: 145 KIGQPVPKSTTISLEEGEQVSELTEEDLRERVEAAVEEVGGLPVIARTTYTLGGSGSGVV 204

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKS-DFYSY 202
            +   +   + +    +   ++LI + + G +E    VM DA      I   ++ D    
Sbjct: 205 HEFDELLARVRKGLRLSRNSEVLITESIAGWVEYEYEVMRDADDSCIIICNMENIDPMGI 264

Query: 203 ELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL---SRKVF 258
                   ST V P++I P + ++E++  A    + +G +G     F +        +  
Sbjct: 265 HT----GESTVVTPSQIVPDEGHQEMRTAALDVIRELGIQGGCNIQFAWHDDGTPGGEYR 320

Query: 259 WLEINV 264
            +E+N 
Sbjct: 321 VVEVNP 326


>gi|52786343|ref|YP_092172.1| acetyl-CoA carboxylase biotin carboxylase subunit [Bacillus
           licheniformis ATCC 14580]
 gi|163119539|ref|YP_079758.2| acetyl-CoA carboxylase biotin carboxylase subunit [Bacillus
           licheniformis ATCC 14580]
 gi|319645075|ref|ZP_07999308.1| AccC protein [Bacillus sp. BT1B_CT2]
 gi|52348845|gb|AAU41479.1| AccC [Bacillus licheniformis ATCC 14580]
 gi|145903047|gb|AAU24120.2| acetyl-CoA carboxylase subunit (biotin carboxylase subunit)
           [Bacillus licheniformis ATCC 14580]
 gi|317392884|gb|EFV73678.1| AccC protein [Bacillus sp. BT1B_CT2]
          Length = 450

 Score = 69.0 bits (168), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 83/221 (37%), Gaps = 18/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     + E + + +      A +    K  +++ +   GVP+ P    
Sbjct: 77  AIHPGYGFLAENADFAELCEEVNVTFVGPTADAISKMGTKDVARETMQQAGVPIVPGSKG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-----SSSWNHGD 164
            I      +     I  P +IK   GG   GI V + ++ +   +       ++++    
Sbjct: 137 IIEDIEDAVSLARDIGYPVIIKATAGGGGKGIRVARTEEELINGIKITQQEAATAFG-NP 195

Query: 165 QLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            + IE+Y++    +   V+ D   +   +            K             +   I
Sbjct: 196 GVYIEKYIEDFRHVEIQVLADTHGNTIHLGERDCSIQRRLQKLL----EETPSPALDEGI 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +++ + A  A +A+   G    +F++D   +K +++E+N 
Sbjct: 252 REQMGQAAVKAAEAVKYTGAGTVEFIYDYREQKFYFMEMNT 292


>gi|238794623|ref|ZP_04638229.1| Biotin carboxylase [Yersinia intermedia ATCC 29909]
 gi|238726012|gb|EEQ17560.1| Biotin carboxylase [Yersinia intermedia ATCC 29909]
          Length = 449

 Score = 69.0 bits (168), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 39/222 (17%), Positives = 81/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         L  DK+ +   +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAEQVERSGFIFIGPRAETIRLMGDKVSAISAMKKAGVPCVPGSDG 136

Query: 112 LVNRFT---MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
            +   T         I  P +IK   GG   G+ V++ D+ +   +     ++ +  + D
Sbjct: 137 PLTDDTTKNKAFAKRIGYPVIIKASGGGGGRGMRVVRHDKDLEQSINMTRAEAKAAFNND 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+Y++    +   ++ D   +   +A           K          PA  I  +
Sbjct: 197 MVYMEKYLENPRHIEVQILADGQGNAIYLAERDCSMQRRHQK-----VVEEAPAPGITSE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + + +      A   IG RG    +FL+   + + +++E+N 
Sbjct: 252 LRRYIGERCAKACVEIGYRGAGTFEFLY--ENGEFYFIEMNT 291


>gi|258544515|ref|ZP_05704749.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Cardiobacterium
           hominis ATCC 15826]
 gi|258520250|gb|EEV89109.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Cardiobacterium
           hominis ATCC 15826]
          Length = 447

 Score = 69.0 bits (168), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 33/222 (14%), Positives = 76/222 (34%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         +  DK+ + + + + G+P  P    
Sbjct: 77  AIHPGYGFLSENADFAERVEQSGFTFIGPRAETIRMMGDKVEAIKAMKAAGIPCVPGSDG 136

Query: 112 ---LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGD 164
                      +   I  P +IK   GG   G+ V++    +   +     ++      D
Sbjct: 137 PLSTDPDEIRATAERIGYPVIIKAAGGGGGRGMRVVRSADEVVDAVRLTKTEARQAFGND 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E++++    +   V+ D   +               L+          PA  I  +
Sbjct: 197 MVYMEKFLETPRHIEIQVLSDKHGNAI-----HLGERDCSLQRRHQKVMEEAPAPGISEE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
               +  +   A + IG  G    +FL+   + + +++E+N 
Sbjct: 252 QRNAIGAVCVEACKRIGYHGAGTFEFLY--ENGEFYFIEMNT 291


>gi|220904368|ref|YP_002479680.1| carbamoyl-phosphate synthase, large subunit [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
 gi|219868667|gb|ACL49002.1| carbamoyl-phosphate synthase, large subunit [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
          Length = 1080

 Score = 69.0 bits (168), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 97/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DV------------DRSVGLVLAHLKPDLAFN 56
           SG     AL++ G++V  +         D               ++  V+   +PD    
Sbjct: 29  SGSQAVKALKEEGYEVVLVNSNPATIMTDPQLADATYVEPIEHDTLAAVIRKERPDALLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G    +  +      +L    +    +       +  +   ++ +   G+ +  S +
Sbjct: 89  TLGGQTALNAALGLAKSGVLAEYGVELIGAQAEVIEKAESRELFREAMEKIGLKMPASGI 148

Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                   Q  +++  P +++P       G  V      +        + +   +++IEQ
Sbjct: 149 ARTIDEVRQLGNVLPFPLIVRPAFTLGGTGGGVAYNLADLEEVAGNGLAASPTSEVMIEQ 208

Query: 171 YVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            V G  E+   VM D + + V   ++   D           +S  V P + +    Y+++
Sbjct: 209 SVLGWKEIEMEVMRDVNDNCVIICSIENLDPMGVHT----GDSITVAPVQTLSDAEYQQI 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RDASIAIMREIGVETGGSNVQFGVNPANGEIVVIEMNP 302



 Score = 47.8 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 45/262 (17%), Positives = 84/262 (32%), Gaps = 27/262 (10%)

Query: 25  ALEDAGF---------KVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ------ 69
           AL DAG          +    D D S  L    L  +   N++     E  +VQ      
Sbjct: 592 ALRDAGVMAIMANSNPETVSTDYDTSDRLYFEPLTFEDVMNIVETEKPEGVIVQFGGQTP 651

Query: 70  ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHL 123
                 L    +P   +   A   + D+ R + ++   G+   P+         +     
Sbjct: 652 LNLAVPLMRAGVPILGTSPDAIDRAEDRERFQALIQKLGLLQPPNGTAMSLEDALAVAER 711

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I+ P V++P        + V      +               +LI+++++       V  
Sbjct: 712 IAYPVVVRPSYVLGGRAMAVAYDVSELTAYFHAQVPEKPKHPILIDKFLE---HAVEVDV 768

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRG 242
           DA  D  ++ V     +  E    S +S  VLP+  +  D    +        + +   G
Sbjct: 769 DAISDGKDVYVAGIMEHIEEAGIHSGDSACVLPSYSLSYDHVALIASQTEALARELKVIG 828

Query: 243 ISRSDFLFDPLSRKVFWLEINV 264
           +    F        ++ LE+N 
Sbjct: 829 LMNIQFAI--KGDDIYILEVNP 848


>gi|159028776|emb|CAO89947.1| cphA [Microcystis aeruginosa PCC 7806]
          Length = 877

 Score = 69.0 bits (168), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 53/121 (43%), Gaps = 4/121 (3%)

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSIL---VNRFTMDSQHLISPPYVIKPLKGG 136
           + SGILA  L+ DK  +K ++   G+PV    +   ++  +   + +   P VIKPL G 
Sbjct: 207 SFSGILAVELACDKEGTKTILKDGGIPVPRGTVIQYLDELSAAIEEVGGFPIVIKPLDGN 266

Query: 137 SSLGIIV-IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195
              GI + +K  Q        +S+ +    +++E+Y  G +    V+      V E    
Sbjct: 267 HGRGISIDVKTQQEAEEAYDLASAASKTRSVIVERYYKGSDHRILVINGKVAAVAERIPA 326

Query: 196 K 196
            
Sbjct: 327 H 327


>gi|154283467|ref|XP_001542529.1| carbamoyl-phosphate synthase arginine-specific large chain
           [Ajellomyces capsulatus NAm1]
 gi|150410709|gb|EDN06097.1| carbamoyl-phosphate synthase arginine-specific large chain
           [Ajellomyces capsulatus NAm1]
          Length = 1182

 Score = 69.0 bits (168), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 55/291 (18%), Positives = 107/291 (36%), Gaps = 41/291 (14%)

Query: 6   GGIS----SEREVSLSSGKACASALEDAGFK--------------------VSQIDVDRS 41
           GG+S     E + S   G     AL++AG +                    V  + V   
Sbjct: 114 GGLSIGQAGEFDYS---GSQALKALKEAGVESVLINPNIATIQTDHKLADEVYYLPVTPE 170

Query: 42  -VGLVLAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRS 96
            V  V+   +PD  F    G    +  VQ     + +   +    + I    +S D+   
Sbjct: 171 YVTHVIEREQPDGIFLTFGGQTALNLGVQMNRMGVFDRYGVKVLGTSIRTLEVSEDRDLF 230

Query: 97  KQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154
            + ++   +P+  S+ VN     +++   I  P +++       LG       + +    
Sbjct: 231 AKALNEISIPIAESVAVNSVDEALEAAEKIGYPIIVRSAYALGGLGSGFANNAEELK--N 288

Query: 155 LQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTH 213
           L S S     Q+L+E+ + G  E+   V+ DA+ +   I V   + +   L   + +S  
Sbjct: 289 LSSRSLTLAPQILVEKSLKGWKEVEYEVVRDAANN--CITVCNMENFD-PLGIHTGDSIV 345

Query: 214 VLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
           V P++ +  + Y  ++  A    + +G  G     +   P       +E+N
Sbjct: 346 VAPSQTLSDEEYHMLRTAAIKIVRHLGVVGECNVQYALQPDGLDYRVIEVN 396



 Score = 55.5 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 32/198 (16%), Positives = 70/198 (35%), Gaps = 10/198 (5%)

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVI 130
           E        +       + D+ +  Q++ S GV       ++           +  P ++
Sbjct: 744 ETGGAKVLGTDPKDIDKAEDRHKFSQILDSIGVDQPAWKELSSVAEAEVFADSVGYPVLV 803

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190
           +P    S   + VI     +   LL +S+ +    ++I ++++G +    +  DA     
Sbjct: 804 RPSYVLSGAAMSVIHSRDELKDKLLSASAVSPDHPVVITKFIEGAQE---IDVDAVASAG 860

Query: 191 EIAVPKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
           ++ V     +       S ++T V  P  +   I   V+ +A    +A    G      +
Sbjct: 861 KLIVHAVSEHVEAAGVHSGDATLVLPPVNLEAPIMARVKEIAEKVAKAWSITGPFNMQII 920

Query: 250 F--DPLSRKVFW--LEIN 263
              +P   + F   +E N
Sbjct: 921 KAENPEGGEPFLKVIECN 938


>gi|83592457|ref|YP_426209.1| pyruvate carboxylase [Rhodospirillum rubrum ATCC 11170]
 gi|83575371|gb|ABC21922.1| Pyruvate carboxylase [Rhodospirillum rubrum ATCC 11170]
          Length = 1153

 Score = 69.0 bits (168), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 35/223 (15%), Positives = 77/223 (34%), Gaps = 22/223 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+           + +            +K+ ++ +  +  VPV P+   
Sbjct: 85  AIHPGYGFLSENPEFAEACAEAGLIFIGPPPEVMRSLGNKVSARAMAEAADVPVMPATGP 144

Query: 114 NRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGD 164
               +D        +  P ++K   GG   G+ VI     +   +        +++ +G+
Sbjct: 145 LPEEIDLIRPMAEKVGYPLMLKASWGGGGRGMRVINTPDELERQVSAGRREAEAAFGNGE 204

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
             L +  +    +   ++GD    V              ++  +       PA  +  + 
Sbjct: 205 VYLEKLVLRARHVEVQLLGDHYGTVV-----HLFERDCSVQRRNQKVVERAPAPYLTPEK 259

Query: 224 YKEVQRLAFLAHQAIG--CRGISRSDFLFDPLSRKVFWLEINV 264
            +EV   A    +A G  C G +  +FL D  +    ++E+N 
Sbjct: 260 REEVCEAALRLARAAGYVCAGTA--EFLMDADTGDFHFIEVNP 300


>gi|83776313|dbj|BAE66432.1| unnamed protein product [Aspergillus oryzae]
          Length = 574

 Score = 69.0 bits (168), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 31/206 (15%), Positives = 72/206 (34%), Gaps = 17/206 (8%)

Query: 69  QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLI 124
           QA+L+   + +            DK+ ++++    G P+       +   +  M      
Sbjct: 96  QAVLD-AGLTWIGPDPSVIEALGDKVEARRIALRVGAPLVAGSNGPVSTAKEVMAFTREH 154

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPL----DLLQSSSWNHGDQLLIEQYV-DGIELTC 179
             P VIK   GG   G+ V      +       + ++++     +  +E+++     +  
Sbjct: 155 GLPIVIKAAHGGGGRGLKVAWTMDEVTECYGSAVREATAAFGRGECFVERFLHRPRHIEA 214

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAI 238
            ++ D   +V  +           ++          PA  +  +  +++Q  A     A 
Sbjct: 215 QILADKHGNVVVVGT-----RDCSVQRRHQKLIEEAPAPLLTTEQQEKIQNAAQSICSAA 269

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINV 264
           G  G    +FL   +   + +LE+N 
Sbjct: 270 GYSGAGTVEFLL-GVDGSISFLEVNT 294


>gi|222823597|ref|YP_002575171.1| acetyl-CoA carboxylase, biotin carboxylase [Campylobacter lari
           RM2100]
 gi|222538819|gb|ACM63920.1| acetyl-CoA carboxylase, biotin carboxylase [Campylobacter lari
           RM2100]
          Length = 480

 Score = 69.0 bits (168), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 87/222 (39%), Gaps = 20/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H  +G   E+       E   I +            +K  ++ ++   G+PV P    
Sbjct: 76  AIHPGYGFLSENYEFAKECEEAGIIFIGPKSDVIRKMGNKNIARYLMKKNGIPVVPGTEK 135

Query: 113 VNRFTMDSQHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGD 164
           +N  T++   L    I  P ++K   GG   GI V+ K++ +         ++ S+   D
Sbjct: 136 LNHCTLEEIKLQALKIGYPVILKASGGGGGRGIRVVHKEEDLEKSFEACKREALSFFKND 195

Query: 165 QLLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
           ++ +E+Y ++   +   ++ D   ++  +            K        + P   I   
Sbjct: 196 EVFMEKYVINPRHIEFQILADNYGNIIHLCERDCSIQRRHQK-----IIEIAPCPSISEK 250

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + K +   A  A +A+G   +   +FL D  +R  +++E+N 
Sbjct: 251 LRKTIGVTAVAAAKAVGYTNVGTVEFLLDDYNR-FYFMEMNT 291


>gi|269468557|gb|EEZ80206.1| biotin carboxylase [uncultured SUP05 cluster bacterium]
          Length = 452

 Score = 69.0 bits (168), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 36/222 (16%), Positives = 84/222 (37%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E       +E     +         +  DK+ + + +    VP  P    
Sbjct: 81  AIHPGYGFLSESADFAQRVEESGFIFIGPRAENIRVMGDKVAAIEAMQKSSVPCVPGSDG 140

Query: 112 LVNRFTM---DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGD 164
            +   T+   +    I  P +IK   GG   G+ V++K++ +     L   ++ ++    
Sbjct: 141 ALTDNTIKTIELARNIGFPIIIKASGGGGGRGMRVVEKEEDLLSSVELTTTEALNFFGNP 200

Query: 165 QLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
           ++ +E+++     +   ++ D   +   +            K          PA  I  +
Sbjct: 201 EVYMEKFLTTPRHVEIQILADEHGNAVHLGERDCSMQRRHQK-----VVEEAPAPGITPE 255

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +  ++ ++   A +AI  RG    +FLF   + + +++E+N 
Sbjct: 256 LRNKIGKVCADACKAINYRGAGTFEFLF--ENNEFYFIEMNT 295


>gi|312110276|ref|YP_003988592.1| acetyl-CoA carboxylase, biotin carboxylase [Geobacillus sp.
           Y4.1MC1]
 gi|311215377|gb|ADP73981.1| acetyl-CoA carboxylase, biotin carboxylase [Geobacillus sp.
           Y4.1MC1]
          Length = 450

 Score = 69.0 bits (168), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 84/221 (38%), Gaps = 18/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     +     I +      A      K  +++ +   GVP+ P    
Sbjct: 77  AIHPGYGFLAENAAFAELCRECNITFIGPSPEAITKMGIKDVARETMREAGVPIVPGSQG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGD 164
            I      +   + I  P +IK   GG   GI V + +Q +   +       ++++    
Sbjct: 137 IIESVDEAVALANEIGYPVIIKATAGGGGKGIRVARNEQELVKGINITQQEAATAFG-NP 195

Query: 165 QLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            + IE+Y++    +   V+ D+  +V  +            K             +  + 
Sbjct: 196 GVYIEKYIEDFRHVEIQVLADSYGNVIHLGERDCSIQRRLQK----LVEEAPSPALDEET 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +++ + A  A +A+   G    +F+FD  ++K +++E+N 
Sbjct: 252 RQKMGQAAVQAARAVNYTGAGTVEFIFDYRAKKFYFMEMNT 292


>gi|166365487|ref|YP_001657760.1| cyanophycin synthetase [Microcystis aeruginosa NIES-843]
 gi|166087860|dbj|BAG02568.1| cyanophycin synthetase [Microcystis aeruginosa NIES-843]
          Length = 877

 Score = 69.0 bits (168), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 53/121 (43%), Gaps = 4/121 (3%)

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSIL---VNRFTMDSQHLISPPYVIKPLKGG 136
           + SGILA  L+ DK  +K ++   G+PV    +   ++  +   + +   P VIKPL G 
Sbjct: 207 SFSGILAVELACDKEGTKTILKDGGIPVPRGTVIQYLDELSAAIEEVGGFPIVIKPLDGN 266

Query: 137 SSLGIIV-IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195
              GI + +K  Q        +S+ +    +++E+Y  G +    V+      V E    
Sbjct: 267 HGRGISIDVKTQQEAEEAYDLASAASKTRSVIVERYYKGSDHRILVINGKVAAVAERIPA 326

Query: 196 K 196
            
Sbjct: 327 H 327


>gi|327441192|dbj|BAK17557.1| pyruvate carboxylase [Solibacillus silvestris StLB046]
          Length = 1144

 Score = 69.0 bits (168), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 30/221 (13%), Positives = 76/221 (34%), Gaps = 20/221 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+       E   I +         +  DK+++++   S  +PV P    
Sbjct: 80  AIHPGYGFLSENVDFARRCEEEGIQFIGPTSKHLDMFGDKVKAREQAVSAQIPVIPGTDG 139

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
            +   +           P +IK   GG   G+ ++   + +         ++ +    D+
Sbjct: 140 PVANLQEVEQFSDSYGFPIMIKAALGGGGRGMRLVNSKEELQSAYERAKSEAKAAFGSDE 199

Query: 166 LLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           + +E+  +    +   ++GD   ++  +            K        + P+  I   +
Sbjct: 200 VYVEKAIIKPKHIEVQIIGDTHGNIVHLYERDCSIQRRHQK-----VVEIAPSNSISEQL 254

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             ++   A    + +G       +FL      + +++E+N 
Sbjct: 255 RNDICDAAVKLMKNVGYINAGTVEFLV--ADNQFYFIEVNP 293


>gi|319936904|ref|ZP_08011315.1| carbamoyl-phosphate synthase large subunit [Coprobacillus sp. 29_1]
 gi|319808003|gb|EFW04578.1| carbamoyl-phosphate synthase large subunit [Coprobacillus sp. 29_1]
          Length = 1072

 Score = 69.0 bits (168), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 54/312 (17%), Positives = 114/312 (36%), Gaps = 47/312 (15%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL   G+K+  +              DV          +  ++   +PD    
Sbjct: 29  SGTQACKALRGLGYKIVLVNSNPATIMTDPETADVTYIEPLNLDRLTQIIEKERPDALLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G    +  ++     +L+   +      + A     D++  K+ ++  G+ +  S +
Sbjct: 89  NLGGQSALNLCLELQEAGVLDKYNVKVLGVQVDAIERGEDRLEFKKEMNKLGIEMAKSEI 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            N     ++    +  P V++P       G  ++   + +   + +    +   Q LIE+
Sbjct: 149 ANTVEHALEIAEDLGYPVVVRPAYTMGGAGGGLVYNVEELKTVVSRGLQASLVHQCLIEE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQ 228
            + G  EL   ++ DA  ++  +   ++      L   + +S    P   I  ++   ++
Sbjct: 209 SILGWEELEVEIVRDAKGNMITVCFIEN---IDPLGVHTGDSFCSAPMLTISQEVQDRLK 265

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI--------FPE---- 276
             AF   +++G  G +   F  DP+S ++  +EIN +   T  S         FP     
Sbjct: 266 DQAFRIVESVGVIGGTNVQFAHDPVSDRIAVIEINPR---TSRSSALASKATGFPIALVS 322

Query: 277 MAAYAGYSFREL 288
               AG +  E+
Sbjct: 323 AMLAAGLTLDEI 334



 Score = 57.8 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/201 (16%), Positives = 81/201 (40%), Gaps = 10/201 (4%)

Query: 68  VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-ILVN-RFTMDSQHLIS 125
           + A L+   +    +      ++ D+     ++    +P+  S + VN    ++    I 
Sbjct: 643 LAAQLKKNGVNILGTTPETIDMAEDRDLFNAMMEKLEIPMPESGMAVNVEEALEIAKRIG 702

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGD 184
            P +++P       G+ V+  ++S+   +  +        +LI++++ + +E     + D
Sbjct: 703 YPLMVRPSYVLGGRGMEVVYDNESLEQYMKAAVGVTPDRPILIDRFLNNAMECEADAISD 762

Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGI 243
                T + VP    +       S +S  +LP+K IP+   + ++       + +  RG+
Sbjct: 763 G----TNVFVPAVMEHIELAGIHSGDSACILPSKHIPMRHLETIKEYTKKIAKEMNVRGL 818

Query: 244 SRSDFLFDPLSRKVFWLEINV 264
              +  +     KV+ LE N 
Sbjct: 819 --MNMQYAIADDKVYVLEANP 837


>gi|260432886|ref|ZP_05786857.1| carbamoyl-phosphate synthase, large subunit [Silicibacter
           lacuscaerulensis ITI-1157]
 gi|260416714|gb|EEX09973.1| carbamoyl-phosphate synthase, large subunit [Silicibacter
           lacuscaerulensis ITI-1157]
          Length = 1117

 Score = 69.0 bits (168), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 42/268 (15%), Positives = 98/268 (36%), Gaps = 35/268 (13%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAI---- 71
           AL +AG++   +         D D S  L    L  +    +L     ++G +  +    
Sbjct: 614 ALTEAGYETIMVNCNPETVSTDYDTSDRLYFEPLTFEHVMEILR-TEQQNGTLHGVIVQF 672

Query: 72  -----------LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTM 118
                      LE   IP   +   A  L+ D+ R + +V+  G+    + +   +   +
Sbjct: 673 GGQTPLKLANALEAEGIPILGTTPDAIDLAEDRERFQALVNDLGLKQPKNGIASTDAQAL 732

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IEL 177
           +    I  P VI+P        + +++    +   + ++   +    +L++ Y+ G +EL
Sbjct: 733 EIAEKIGFPLVIRPSYVLGGRAMEIVRDMDQLKRYINEAVVVSGDSPVLLDSYLAGAVEL 792

Query: 178 TC-GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
               +     + V  I             +S  ++  + P  +  +I  E++   +   +
Sbjct: 793 DVDALCDGKDVHVAGI----MQHIEEAGVHSGDSACSLPPYSLSKEIIAEIKDQTYKLAK 848

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINV 264
           A+   G+    F       +++ +E+N 
Sbjct: 849 ALNVVGLMNVQFAI--KDGEIYLIEVNP 874



 Score = 52.8 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 44/291 (15%), Positives = 97/291 (33%), Gaps = 48/291 (16%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D                V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPGLADATYIEPITPEVVAKIIEKERPDALLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G  G +  +      +LE   +    +   A  ++ D+   ++ +   G+    + +
Sbjct: 89  TMGGQTGLNTSLALEEMGVLEKFGVEMIGAKREAIEMAEDRKLFREAMDRLGLENPKATI 148

Query: 113 VN---------------RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
           V                +  +D    I  P +I+P       G  V    +         
Sbjct: 149 VTAPKKADGSADLDAGVQMALDELENIGLPAIIRPAFTLGGTGGGVAYNREDYIHFCRSG 208

Query: 158 SSWNHGDQLLIEQYVDG-IELTCGVMGDASL-DVTEIAVPKSDFYSYELKYSSLNSTHVL 215
              +  +Q+L+++ + G  E    V+ D++   +   ++   D           +S  V 
Sbjct: 209 MDASPVNQILVDESLLGWKEYEMEVVRDSADNAIIVCSIENVDPMGVHT----GDSITVA 264

Query: 216 PA-KIPLDIYKEVQRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           PA  +    Y+ ++  +    + IG   G S   +  +P   ++  +E+N 
Sbjct: 265 PALTLTDKEYQIMRNGSIAVLREIGVETGGSNVQWAVNPADGRMVVIEMNP 315


>gi|13475023|ref|NP_106581.1| 3-methylcrotonyl-CoA carboxylase biotin-containing subunit
           [Mesorhizobium loti MAFF303099]
 gi|14025768|dbj|BAB52367.1| 3-methylcrotonyl-CoA carboxylase biotin-containing subunit
           [Mesorhizobium loti MAFF303099]
          Length = 653

 Score = 69.0 bits (168), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 36/206 (17%), Positives = 69/206 (33%), Gaps = 19/206 (9%)

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT----MDSQHLISPPY 128
           E   + +      +      K  +K+++   GVPV P                  I  P 
Sbjct: 99  EAAGLVFIGPSASSIRAMGLKDAAKRLMEITGVPVVPGYHGEAQDPALLASRAIEIGFPV 158

Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQLLIEQYVD-GIELTCGVMG 183
           +IK   GG   G+  ++        L     ++ +    D++LIE+YV+    +   V G
Sbjct: 159 LIKARAGGGGKGMRRVETAGEFADALASAQREAKASFGDDKVLIEKYVEKPRHIEVQVFG 218

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRG 242
           D   +                +          PA  +  ++   +   A  A +AI   G
Sbjct: 219 DNHGNGV-----HLFERDCSAQRRHQKVIEEAPAPGMTPEMRVAMTHAAVKAAKAINYSG 273

Query: 243 ISRSDFLFDPLSR----KVFWLEINV 264
               +F+ D        + +++E+N 
Sbjct: 274 AGTIEFIVDASEGLRADRFWFMEMNT 299


>gi|268608817|ref|ZP_06142544.1| carbamoyl phosphate synthase large subunit [Ruminococcus
           flavefaciens FD-1]
          Length = 1063

 Score = 69.0 bits (168), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 49/286 (17%), Positives = 103/286 (36%), Gaps = 33/286 (11%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQID-------VDRS--------------VGLV 45
           G ++E + +   G     AL+  G +V  ++        D++              +  +
Sbjct: 21  GQAAEFDYA---GTQACRALKQEGLEVVLVNSNPATIMTDKAMADKVYIEPLTLDVIKRI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   KPD   + L G  G    +Q      L+   +    +  L    + D+   K  + 
Sbjct: 78  IEIEKPDSLLSTLGGQTGLTLSMQLAEEGFLDSHNVKLLGADPLTIHKAEDRQAFKDTME 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G PV PS +V      +D   +I  P +++P       G  + + ++ +         
Sbjct: 138 KIGEPVIPSKVVENVEDAVDFAQVIHYPVIVRPAFTLGGTGGGIAQNEEELRDIATNGLR 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   Q+L+E+ + G  E+   V+ DA  +V  I V   + +     ++  +        
Sbjct: 198 LSPITQILVEKCISGWKEIEFEVIRDAKGNV--ITVCSMENFDPVGVHTGDSIVIAPAVT 255

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +    Y+ ++  A    + +   G     F   P S +   +E+N 
Sbjct: 256 LSDREYQMLRTAAINIIKELKVEGGCNCQFALHPTSFQYAVIEVNP 301



 Score = 65.1 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 32/228 (14%), Positives = 83/228 (36%), Gaps = 19/228 (8%)

Query: 71  ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTMDSQHLISPPY 128
            L  + +    +       + D+ R  +V+  CG+P      V      + +   +  P 
Sbjct: 643 YLSDMGVRILGTSADMIDAAEDRERFDEVLEKCGIPRPAGHTVMNTEEAIAAAEDLGYPV 702

Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS-- 186
           +++P        +I+      +   +    S N  + +LI++Y+ G E+    + D    
Sbjct: 703 LLRPSYVLGGQNMIIAHSRADVVEYMGIIMSHNIENPVLIDKYMMGTEVEVDAICDGEDF 762

Query: 187 -LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGIS 244
            +      + ++  +S        +S  + PA+ +   I + +        + +   G+ 
Sbjct: 763 LIPGIMEHIERAGVHS-------GDSISIYPAQHLSERIKRIIVEYTRKLAKELNVIGL- 814

Query: 245 RSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
             +  +   + +VF +E+N +   T     P ++   G    ++   +
Sbjct: 815 -VNIQYVVYNHEVFVIEVNTRSSRT----VPYISKVTGIPMVDIATKI 857


>gi|240949499|ref|ZP_04753839.1| phosphoribosylglycinamide formyltransferase 2 [Actinobacillus minor
           NM305]
 gi|240296072|gb|EER46733.1| phosphoribosylglycinamide formyltransferase 2 [Actinobacillus minor
           NM305]
          Length = 393

 Score = 69.0 bits (168), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 56/311 (18%), Positives = 106/311 (34%), Gaps = 60/311 (19%)

Query: 19  GKACASALEDAGFKVSQID--------------------VDRSVGLVLAHLKPDLAFNVL 58
           GK     L+  G +V  +D                       ++  ++   KPD     +
Sbjct: 24  GKEVVIELQRLGVEVIAVDRYENAPAQQVAHRAYTISMLDGAALRALVEQEKPDFIVPEV 83

Query: 59  HGNFGEDGLVQAILELLEIPY-THSGILASALSMDKM-RSKQVVSSCGVPVCPSILVNRF 116
                E      ++EL +  Y       A+ L+M++    +      G+   P   V+ F
Sbjct: 84  -----EAIATATLVELEQEGYCVIPTAKATQLTMNREGIRRLAAEELGLKTSPYRFVDNF 138

Query: 117 T--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD--LLQSSSWNHGDQLLIEQYV 172
                +   I  P V+KP+   S  G  +IK  + I       Q      G ++++E ++
Sbjct: 139 EDFQSAIKEIGIPCVVKPIMSSSGHGQSIIKSAEQIQQAWDYSQEGGRAGGGRVIVEGFI 198

Query: 173 ----DGIELTCGVMGDASL--DVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE 226
               +  +LT   +   S    +  I +       Y   +         P  +     ++
Sbjct: 199 QFDYEITQLTVRHIHGTSFLAPIGHIQIDG----DYRESW--------QPQVMSEKAQQK 246

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP---GM-TPVSI-FPEMAAYA 281
            Q +A     A+G RGI   +         + + E++ +P   GM T +S    + A +A
Sbjct: 247 AQEVAEKITSALGGRGIFGVELFV--CGDDIIFNEVSPRPHDTGMVTMISQELSQFALHA 304

Query: 282 ----GYSFREL 288
               G    E+
Sbjct: 305 RAILGLPIPEI 315


>gi|162139396|ref|YP_280940.2| acetyl-CoA carboxylase biotin carboxylase subunit [Streptococcus
           pyogenes MGAS6180]
          Length = 454

 Score = 69.0 bits (168), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 79/220 (35%), Gaps = 16/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  FG   E+     + E + I +            DK+ ++  +   GVPV P    
Sbjct: 77  AIHPGFGFLSENSKFATMCEEMNIKFIGPSASVMDKMGDKINARSEMIKAGVPVIPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG----DQ 165
            +   +  +   + I  P ++K   GG   GI  ++ +  +      +S    G      
Sbjct: 137 EVYNAQEALAIANKIGYPVMLKASAGGGGKGIRKVETEADLEAAFNAASQEALGAFGNGA 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+ +     +   ++GDA  ++  +            K             I   + 
Sbjct: 197 MYLEKVIYPARHIEVQILGDAHGNIIHLGERDCSLQRNNQKVL----EESPSIAIGNTLR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            E+ + A  A +A+        +FL D  S K +++E+N 
Sbjct: 253 HEMGQAAVRAAEAVAYENAGTIEFLLDEDSEKFYFMEMNT 292


>gi|71803232|gb|AAX72585.1| biotin carboxylase [Streptococcus pyogenes MGAS6180]
          Length = 470

 Score = 69.0 bits (168), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 79/220 (35%), Gaps = 16/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  FG   E+     + E + I +            DK+ ++  +   GVPV P    
Sbjct: 93  AIHPGFGFLSENSKFATMCEEMNIKFIGPSASVMDKMGDKINARSEMIKAGVPVIPGSDG 152

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG----DQ 165
            +   +  +   + I  P ++K   GG   GI  ++ +  +      +S    G      
Sbjct: 153 EVYNAQEALAIANKIGYPVMLKASAGGGGKGIRKVETEADLEAAFNAASQEALGAFGNGA 212

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+ +     +   ++GDA  ++  +            K             I   + 
Sbjct: 213 MYLEKVIYPARHIEVQILGDAHGNIIHLGERDCSLQRNNQKVL----EESPSIAIGNTLR 268

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            E+ + A  A +A+        +FL D  S K +++E+N 
Sbjct: 269 HEMGQAAVRAAEAVAYENAGTIEFLLDEDSEKFYFMEMNT 308


>gi|85707936|ref|ZP_01039002.1| hypothetical protein NAP1_01835 [Erythrobacter sp. NAP1]
 gi|85689470|gb|EAQ29473.1| hypothetical protein NAP1_01835 [Erythrobacter sp. NAP1]
          Length = 419

 Score = 69.0 bits (168), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 40/215 (18%), Positives = 78/215 (36%), Gaps = 31/215 (14%)

Query: 82  SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT-MDSQHLISPPYVIKPLKG----- 135
            G  A  +  DK  ++ + +S G+P+      +  T    +H    P V+KP        
Sbjct: 128 PGDEALRIFTDKRATRSLATSLGIPIAHGESADSLTTWKREHQARFPLVVKPAASYAHGS 187

Query: 136 GSSLG-IIVIKKDQSIP--LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192
           GS+   + +++ +  +    ++L   +      +++E Y+ G  +   V+  A     E+
Sbjct: 188 GSAKAPVSIVRDEAELDRCAEILGERA------VIVEDYLPGTGIGVSVL--ARHGSIEL 239

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
                   S     +  +S  +     P      +   A     A G  G++  +F  D 
Sbjct: 240 VWQHRRLASTHE--TGRSSVRLGEPPSP-----ALLEDATRMAGATGLNGVAMFEFRMDE 292

Query: 253 LSRKVFWLEINV-QPGMTPVSIFPEMAAYAGYSFR 286
            +     +E+N    G  P      +A  AGY F 
Sbjct: 293 RTGNYILVEVNPRFWGSLP------LAVAAGYDFP 321


>gi|182437271|ref|YP_001824990.1| putative lysine biosynthesis enzyme LysX [Streptomyces griseus
           subsp. griseus NBRC 13350]
 gi|178465787|dbj|BAG20307.1| putative lysine biosynthesis enzyme LysX [Streptomyces griseus
           subsp. griseus NBRC 13350]
          Length = 284

 Score = 69.0 bits (168), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 39/207 (18%), Positives = 75/207 (36%), Gaps = 17/207 (8%)

Query: 66  GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTMDSQHL 123
           GL+  + E   +P T +   A     +K   + ++ + GVPV    LV   +    +   
Sbjct: 67  GLIATLAEAAGVP-TLNTARAIHACENKAALRALLRTAGVPVPDHRLVLSRKDFDRALAD 125

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIP--LDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
           +  P V+KP+ GG    + +I+   +     D ++  +       ++E Y+ G  + C V
Sbjct: 126 LPLPLVLKPVFGGMGKRVTLIRHADTAHSVYDYVEDLAHAFEQASVVEPYLGGSSVRCLV 185

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241
           +G   +   E     SD+ +     +   +    P         +V ++       +G  
Sbjct: 186 VGRELVGAAEFESGGSDWRNNAALGNKNRALAHDP---------DVVKIVDGVVDVLGPG 236

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGM 268
                D    P        E+N  PG 
Sbjct: 237 IYG-VDLFATPDGH--VVNEVNHAPGF 260


>gi|157147550|ref|YP_001454869.1| carbamoyl phosphate synthase large subunit [Citrobacter koseri ATCC
           BAA-895]
 gi|157084755|gb|ABV14433.1| hypothetical protein CKO_03350 [Citrobacter koseri ATCC BAA-895]
          Length = 1074

 Score = 69.0 bits (168), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 42/278 (15%), Positives = 97/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D +              V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +    Q +L    +    +   A   + D+ R    +   G+    S +
Sbjct: 89  TMGGQTALNCALELERQGVLAEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLDTARSGI 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     +     +  P +I+P       G  +    +       +    +  ++LLI++
Sbjct: 149 AHTMEEALAVAADVGYPCIIRPSFTMGGTGGGIAYNREEFEEICARGLDLSPTNELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + +   +   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIEN----FDAMGIHTGDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RNASMAVLREIGVETGGSNVQFAVNPKNGRLIVIEMNP 302



 Score = 62.4 bits (151), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 30/197 (15%), Positives = 75/197 (38%), Gaps = 10/197 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           LE   +P   +   A   + D+ R +Q V    +    +  V      ++    I  P V
Sbjct: 654 LEAAGVPVIGTSPDAIDRAEDRERFQQAVDRLKLKQPANATVTAIEQAVEKAKEIGYPLV 713

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  +  +      + S ++   +L+++++ D +E+    + D  + 
Sbjct: 714 VRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDRFLDDAVEVDVDAICDGEMV 773

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           +    +   +    +    S +S   LPA  +  +I   +++        +  RG+    
Sbjct: 774 LIGGIMEHIE----QAGVHSGDSACSLPAYTLSKEIQDVMRQQVQKLAFELQVRGLMNVQ 829

Query: 248 FLFDPLSRKVFWLEINV 264
           F       +V+ +E+N 
Sbjct: 830 FAV--KDNEVYLIEVNP 844


>gi|21911055|ref|NP_665323.1| acetyl-CoA carboxylase biotin carboxylase subunit [Streptococcus
           pyogenes MGAS315]
 gi|28895259|ref|NP_801609.1| acetyl-CoA carboxylase biotin carboxylase subunit [Streptococcus
           pyogenes SSI-1]
 gi|21905264|gb|AAM80126.1| putative acetyl-CoA carboxylase biotin carboxylase subunit
           [Streptococcus pyogenes MGAS315]
 gi|28810505|dbj|BAC63442.1| putative acetyl-CoA carboxylase biotin carboxylase subunit
           [Streptococcus pyogenes SSI-1]
          Length = 454

 Score = 69.0 bits (168), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 79/220 (35%), Gaps = 16/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  FG   E+     + E + I +            DK+ ++  +   GVPV P    
Sbjct: 77  AIHPGFGFLSENSKFATMCEEMNIKFIGPSASVMDKMGDKINARSEMIKAGVPVIPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG----DQ 165
            +   +  +   + I  P ++K   GG   GI  ++ +  +      +S    G      
Sbjct: 137 EVYNAQEALAIANKIGYPVMLKASAGGGGKGIRKVETEADLEAAFNAASQEALGAFGNGA 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+ +     +   ++GDA  ++  +            K             I   + 
Sbjct: 197 MYLEKVIYPARHIEVQILGDAHGNIIHLGERDCSLQRNNQKVL----EESPSIAIGNTLR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            E+ + A  A +A+        +FL D  S K +++E+N 
Sbjct: 253 HEMGQAAVRAAKAVAYENAGTIEFLLDEDSEKFYFMEMNT 292


>gi|295704584|ref|YP_003597659.1| acetyl-CoA carboxylase biotin carboxylase [Bacillus megaterium DSM
           319]
 gi|294802243|gb|ADF39309.1| acetyl-CoA carboxylase, biotin carboxylase [Bacillus megaterium DSM
           319]
          Length = 454

 Score = 69.0 bits (168), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 37/238 (15%), Positives = 89/238 (37%), Gaps = 23/238 (9%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRS 96
           R++  V    K D     +H  +G   E+     + E  ++ +      A      K  +
Sbjct: 64  RNLLTVAQVTKAD----AIHPGYGFLAENADFVEMCESYDVTFIGPKAEAIRKMGAKAVA 119

Query: 97  KQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152
           +  +   GVP+ P     I  +   +     I  P ++K   GG   G+ +   ++ +  
Sbjct: 120 RDTMKQAGVPIVPGTEGLIKDSSSAIPVAREIGYPIIVKATAGGGGKGMRLAHSEEELEK 179

Query: 153 DLLQS-----SSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
            + Q+     +++ +G  + +E+Y++    +   ++ D   +V  +            K 
Sbjct: 180 AIRQAQQEAETAFGNGG-VYLEKYLEEPKHIEIQIIADEEGNVVHLGERDCSIQRRHQK- 237

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
                       +  ++  ++ + A  A +A+   G+   +FL D      +++E+N 
Sbjct: 238 ---LVEEAPSPAVDENLRAKMGKAAVSAAKAVDYTGVGTVEFLLDKH-GHFYFMEMNT 291


>gi|291456361|ref|ZP_06595751.1| carbamoyl-phosphate synthase, large subunit [Bifidobacterium breve
           DSM 20213]
 gi|291381638|gb|EFE89156.1| carbamoyl-phosphate synthase, large subunit [Bifidobacterium breve
           DSM 20213]
          Length = 1127

 Score = 69.0 bits (168), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 44/288 (15%), Positives = 104/288 (36%), Gaps = 36/288 (12%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQIDVDRS---------------------VGLV 45
           G ++E + S   G      L + G +V  ++ + +                     +  +
Sbjct: 21  GQAAEFDYS---GTQACRVLREEGIRVILVNSNPATIMTDPEMADATYIEPIATPILEQI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +A  +PD     L G    +  +      +L+   +    + + A     D+   K+VV 
Sbjct: 78  IAKERPDALLPTLGGQTALNAAMALGEAGVLKKYNVELIGASLEAIDRGEDRELFKKVVD 137

Query: 102 SCGVPVCPSILVNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G     S + +           +  P V++P      LG  +   ++ +         
Sbjct: 138 EAGAESARSRIAHSLEECDKIAEELGYPLVVRPSFTMGGLGSGIAHDEEELHRIAGAGIH 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
           ++  D++LIE+ ++G  E    +M D + +V  +   ++      +   + +S  V P  
Sbjct: 198 YSPTDEVLIEEGIEGWKEFELELMRDRNDNVVVVCPIENVD---PVGVHTGDSITVAPCF 254

Query: 219 -IPLDIYKEVQRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
            +    Y++++ +     + +G   G     F   P + ++  +E+N 
Sbjct: 255 TLTDREYQKLRDIGIAIIRGVGVDTGGCNIQFAIHPKTGRIIVIEMNP 302



 Score = 50.5 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 32/232 (13%), Positives = 86/232 (37%), Gaps = 27/232 (11%)

Query: 67  LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTMDSQHLI 124
            + A L+   +P   +   +  L+ ++    +V+    +        L      ++ H I
Sbjct: 651 SLAARLKAAGVPILGTTPESIDLAENRELFGEVLKKAEMNAPRYGTALSLEEAKEAAHRI 710

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQL---------LIEQYV-DG 174
             P +++P       G+ ++  D+ +   + ++ +    D +         LI++++ D 
Sbjct: 711 GYPVLVRPSYVLGGRGMEIVYDDKQLNKYVDRALAEAQADTVVSGRLPSPLLIDKFLQDA 770

Query: 175 IELTC-GVMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           IE+    +     L +  I   V ++  +S +       +  + P+ +  D  + ++   
Sbjct: 771 IEIDVDALFDGKELYIGGIMEHVEEAGVHSGDA------ACTLPPSTLSDDQIRRLREGT 824

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283
           +    A GC      +  +  ++  ++ +E N +   T     P  +   G 
Sbjct: 825 YAI--AAGCHVQGLINVQYAFMANTLYVIEANPRASRT----VPFASKATGV 870


>gi|91787311|ref|YP_548263.1| cyanophycin synthetase [Polaromonas sp. JS666]
 gi|91696536|gb|ABE43365.1| Cyanophycin synthetase [Polaromonas sp. JS666]
          Length = 743

 Score = 69.0 bits (168), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 23/102 (22%), Positives = 50/102 (49%), Gaps = 5/102 (4%)

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIV-IK 145
           ++ DK  +K ++++CGVPV    +V+      ++   I  P V+KP  G    G+ + + 
Sbjct: 220 IAHDKDLTKSLLATCGVPVPDGEIVSTAERAWEAAQDIGLPVVVKPSDGNHGRGVSLDLN 279

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL 187
             + +      +    HG ++++E+++ G E    V+G   +
Sbjct: 280 TREEVEAAFRVAEP--HGSEVMVERFIRGHEHRLLVVGGRVV 319


>gi|289435111|ref|YP_003464983.1| phosphoribosylaminoimidazole carboxylase, ATPase subunit [Listeria
           seeligeri serovar 1/2b str. SLCC3954]
 gi|289171355|emb|CBH27897.1| phosphoribosylaminoimidazole carboxylase, ATPase subunit [Listeria
           seeligeri serovar 1/2b str. SLCC3954]
          Length = 374

 Score = 69.0 bits (168), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 34/198 (17%), Positives = 83/198 (41%), Gaps = 18/198 (9%)

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-ILVNRFTMDSQ-HLISPPYVI 130
           +L+++P    G    +++ D++  K  + S  + + P  I+V++  ++++   I  P V+
Sbjct: 91  DLVDVPQ---GAELLSITQDRILEKAYLESANINIAPYAIIVDKEEIETEIKSIGYPAVL 147

Query: 131 KPLKGG-SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLD 188
           K  +GG    G +V+     I      +    +G  +L E ++    E++  V       
Sbjct: 148 KTAQGGYDGKGQVVLHDADDIERA---ARLLRYGSSVL-EAWIPFEKEISIVVARGKDGQ 203

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           V    V ++         +++  T + PA +  D+++E + +A      +   G+   + 
Sbjct: 204 VETFPVAENVHV------NNILHTTIAPADVSADVHEEAEEIAKKLADVLQLCGVLAVEM 257

Query: 249 LFDPLSRKVFWLEINVQP 266
                   ++  E+  +P
Sbjct: 258 FVTKS-GAIYVNELAPRP 274


>gi|225574638|ref|ZP_03783248.1| hypothetical protein RUMHYD_02715 [Blautia hydrogenotrophica DSM
           10507]
 gi|225038149|gb|EEG48395.1| hypothetical protein RUMHYD_02715 [Blautia hydrogenotrophica DSM
           10507]
          Length = 446

 Score = 69.0 bits (168), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 32/220 (14%), Positives = 75/220 (34%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  FG   E+       +   + +            +K  +K+ +   G+PV      
Sbjct: 77  AIHPGFGFLSENDQFAEKCQDWGVVFVGPSSELIRKMGNKSVAKETMRQAGIPVIEGSKE 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSWNHGDQ 165
            +  N+  +     I  P ++K   GG   G+ ++ +         L   ++        
Sbjct: 137 PVFDNKEALRQAEKIGFPVMVKAAFGGGGKGMRIVSEKSEFESLFRLAQQEAVRSFGDST 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+Y+ +   +   ++ D+  +V  +            K    +   V    +  +  
Sbjct: 197 MYLEKYIQNPRHVEVQIVADSFGNVICLGERDCSVQRRHQKMIEESPCTV----LEDETR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +   A  A +A+G       +FL D      +++E+N 
Sbjct: 253 LRLHEAAVEAAKAVGYESAGTVEFLCD-SDGNFYFMEMNT 291


>gi|212558853|gb|ACJ31307.1| Carbamoyl-phosphate synthase large chain, putative [Shewanella
           piezotolerans WP3]
          Length = 411

 Score = 69.0 bits (168), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 85/221 (38%), Gaps = 20/221 (9%)

Query: 51  PDLAFNVLHGNFGEDGL------VQAIL----ELLEIPYTHSGILASALSMDKMRSKQVV 100
            D+    LH     DG+      +Q +     E +++ Y       + L+ DK +++QV+
Sbjct: 58  VDIVV-ALHNCRAFDGICTYHDDIQHLAIAISEAIDVQY-GVDSRLAELAHDKYQTRQVL 115

Query: 101 SSCGVPVCPSILV--NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS 158
            +  +      L    +      + ++ P ++KP  G  S GI ++         L +  
Sbjct: 116 QAANIEQVECHLAQDEKSFDRYINQMTFPAIVKPYAGTGSSGISILYYPHQAAEALTRLK 175

Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
           +      +LIE Y+ G E +   + +       I      F  ++   + +   HV+PA+
Sbjct: 176 ACGDDFPVLIEGYLQGREFSVEAISENGQH--RIVAVTEKFIDHK---TFVEMGHVVPAR 230

Query: 219 IPLDIYKEVQRLAFLAHQAIG-CRGISRSDFLFDPLSRKVF 258
           I    ++ +         A+   +G++ ++ +      ++ 
Sbjct: 231 ITDSEHQSIDDYVSRVLTALEVIQGLTHTEVILTAKGPQII 271


>gi|167738519|ref|ZP_02411293.1| argininosuccinate lyase [Burkholderia pseudomallei 14]
          Length = 413

 Score = 69.0 bits (168), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 46/234 (19%), Positives = 87/234 (37%), Gaps = 29/234 (12%)

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYVIKP 132
           L +P   +   A     DK R  + +   GV V  + +V+  T   D  H  + P V+KP
Sbjct: 97  LGLP--AADPEAIRTCRDKGRLHRRLRDAGVGVADTEIVSERTQLRDLAHGATYPRVLKP 154

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ-------LLIEQYVDGIELTCGVMGDA 185
             G  S+G+ +++    +     +       ++       +L++ +VDG E +  V+G  
Sbjct: 155 AFGSGSVGVRLVRTPAEMLAHGERMLDARGNERGIALARQVLVQSFVDGPEFSVEVVGLG 214

Query: 186 S---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR- 241
           +     V  +         +      + + H  PA I       +      A  A+G R 
Sbjct: 215 AEHGHAVLGVTGKHLGPLPH-----FVEAGHDFPAPIAAAQRDAIVAETLRALDAVGHRF 269

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA-YAGYSFRELLLWMVE 294
           G +  +        KV  +EIN +       + P+      G    ++L  M++
Sbjct: 270 GPAHVECRV--SGGKVVVIEINPR---LAGGMIPQAIEWATGV---DVLGAMID 315


>gi|7245|emb|CAA39077.1| glutamine-dependent carbamyl phosphate synthetase [Dictyostelium
           discoideum]
          Length = 1042

 Score = 69.0 bits (168), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 32/225 (14%), Positives = 84/225 (37%), Gaps = 20/225 (8%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGV--PVCPSILVNRFTMDSQHLISPPYVIKPL 133
            +    +       + ++ +  +++ + G+  P+   +     T D    +  P +++P 
Sbjct: 643 NVKVLGTHPDMIDSAENRYKFSRLLDTIGIDQPLWKELTSVSDTKDFCESVGFPCLVRPS 702

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL----TCGVMGDASLDV 189
              S   + V+   Q +   L ++++ +    ++I +++   +          G   L  
Sbjct: 703 YVLSGAAMNVVHSSQDLETFLTEAAAVSRDHPVVISKFIQEAKEIEIDAVADNGRIVLFA 762

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               V  +  +S        ++T V PA  +      +V+  A    +A+   G     F
Sbjct: 763 ISEHVENAGVHS-------GDATIVCPAQDLDDATILKVEETARKIAEALNVSGPFNIQF 815

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    + ++  +E N++      S FP ++     +F EL   ++
Sbjct: 816 I--AKNNEIKVIECNLRC---SRS-FPFVSKTLNINFIELATKII 854



 Score = 54.4 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 52/291 (17%), Positives = 103/291 (35%), Gaps = 41/291 (14%)

Query: 6   GGIS----SEREVSLSSGKACASALEDAGFKVSQIDVD---------------------R 40
           GG+S     E + S   G     AL++ G K   I+ +                      
Sbjct: 8   GGLSIGQAGEFDYS---GSQAIKALKEEGIKTILINPNIATVQTSPGLADKVYFLPVNAS 64

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRS 96
           SV  V+ +  PD       G    +  ++     ILE        + I     + D+   
Sbjct: 65  SVQKVIENENPDGILVTFGGQTALNCGIELYKSGILEKYNCKVLGTPIETIIATEDRGIF 124

Query: 97  KQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154
            + +S     + PS+  N    ++     I  P +++       LG       + +    
Sbjct: 125 AEKLSEINERIAPSMACNSLEESLIEAEKIGYPVIVRAAYCLGGLGSGFADNKEQLTA-- 182

Query: 155 LQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTH 213
           L + +     Q+L+E+ + G  E+   V+ D+  +   I V   + +   L   +  S  
Sbjct: 183 LVTEAMATSSQVLVEKSLKGWKEIEYEVLRDSKDN--CITVCNMENFD-PLGIHTGESIV 239

Query: 214 VLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
           V P++ +    Y+ ++  A    + +G  G     +  +P S +   +E+N
Sbjct: 240 VAPSQTLSDREYQMLRETAIKTVRHLGVIGECNIQYSLNPYSEEYCIIEVN 290


>gi|298290379|ref|YP_003692318.1| methylcrotonoyl-CoA carboxylase [Starkeya novella DSM 506]
 gi|296926890|gb|ADH87699.1| Methylcrotonoyl-CoA carboxylase [Starkeya novella DSM 506]
          Length = 453

 Score = 69.0 bits (168), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 33/222 (14%), Positives = 76/222 (34%), Gaps = 19/222 (8%)

Query: 57  VLHGNFG---EDGLV-QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            +H  +G   E+    Q++++   + +            DK R++Q+  + GVPV P  +
Sbjct: 76  AIHPGYGFLSENAEFAQSVID-AGLIWIGPSPETIRQMGDKQRARQIAEAAGVPVVPGSI 134

Query: 113 -----VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----G 163
                +      +   +  P ++K   GG  +G+  +     +   ++ + S        
Sbjct: 135 RFEPGMLEGLEPAAEAVGYPLLVKAAGGGGGIGMRRVDGPDKLTDIVVATQSMAQKSFGN 194

Query: 164 DQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD 222
             + +E++V     +   V G        +            +             +P  
Sbjct: 195 GAVFLERFVPKARHVEIQVFGFGDGRAIHLFERDCSL----QRRFQKVIEEARAPGLPPH 250

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +   +   A    +A    G    +F+ D  + + F+LE+N 
Sbjct: 251 VTDAMAAAAVRLCEATRYSGAGTVEFIVDAGTFEFFFLEMNT 292


>gi|257437802|ref|ZP_05613557.1| carbamoyl-phosphate synthase, large subunit [Faecalibacterium
           prausnitzii A2-165]
 gi|257199725|gb|EEU98009.1| carbamoyl-phosphate synthase, large subunit [Faecalibacterium
           prausnitzii A2-165]
          Length = 1083

 Score = 69.0 bits (168), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 52/287 (18%), Positives = 98/287 (34%), Gaps = 35/287 (12%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI---------DVD------------RSVGLV 45
           G ++E + S   G     AL+  G +   +         D D              V  +
Sbjct: 21  GQAAEFDYS---GTQACRALKAEGIETVLLNSNPATIMTDPDVADHVYIEPMTLEVVERI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           L   KPD     L G  G +  ++      L+   I            + D+   K+ + 
Sbjct: 78  LEIEKPDSVLPNLGGQMGLNLSMELARSGYLDRTGIRLLACKPETIDRAEDRELFKETME 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
               P+ PS +V   +  +     I  P +++P       G  + +  + +         
Sbjct: 138 KLHQPIIPSEVVETLQDALACADRIGYPVIVRPAFTMGGTGGGICENKEKLIEIGTNGLR 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   Q+L+E+ + G  E+   VM D   +V  I V   +     +   + +S  V P++
Sbjct: 198 LSPIHQILVEKCIAGWKEIEYEVMRDHKGNV--ITVCNMENLD-PVGIHTGDSVVVAPSQ 254

Query: 219 -IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +    Y+ ++  A      +G  G     F   P S     +E+N 
Sbjct: 255 TLTDHEYQMLRTAALDIITELGIEGGCNCQFALKPDSYDYAVIEVNP 301



 Score = 61.3 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 35/224 (15%), Positives = 82/224 (36%), Gaps = 20/224 (8%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           ++ + +P   +   A   + D+ R  +++  C +P  P   V      + +   I  P +
Sbjct: 656 MDEIGLPILGTPADAIDEAEDRERFDELLERCKIPRAPGRTVFNLEEALAAADEIGLPVL 715

Query: 130 IKPLK-GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS-- 186
           ++P    G    I+   K   I    + +   +    +L+++Y+ G E     + D    
Sbjct: 716 MRPSYVLGGQNMIVAYTKADVIEYMGVITEHVDMDHPVLLDKYIMGTECEVDAICDGENF 775

Query: 187 -LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGIS 244
            +      V ++  +S        +S  V PA+ +       +        + +   G+ 
Sbjct: 776 LIPGIMEQVERTGVHS-------GDSICVYPAQHLTQAEIDTMVDYTGRFARELHVTGL- 827

Query: 245 RSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
             +  +   + KV+ +E+N +   T     P ++   G    +L
Sbjct: 828 -VNVQYAVSNGKVYVIEVNPRSSRT----VPYISKVTGVPMVDL 866


>gi|222869522|gb|EEF06653.1| predicted protein [Populus trichocarpa]
          Length = 393

 Score = 69.0 bits (168), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 23/109 (21%), Positives = 50/109 (45%), Gaps = 5/109 (4%)

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIV-IK 145
           ++ DK  +K+++++CGVPV    +V+      +    I  P  +KP  G  + G+ + ++
Sbjct: 217 IAQDKDFTKRLLAACGVPVPEGQIVHSPEEAWEVAQDIGFPVTVKPSDGNHARGVTLDLR 276

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194
            +  I      +     G  +++E+++DG E    V+G   +       
Sbjct: 277 DEADIKAAFALAQP--EGSDVIVERFIDGTEHRILVVGGKVVAACRGET 323


>gi|315181043|gb|ADT87957.1| ribosomal protein S6 modification protein-related protein [Vibrio
           furnissii NCTC 11218]
          Length = 483

 Score = 69.0 bits (168), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 29/182 (15%), Positives = 70/182 (38%), Gaps = 10/182 (5%)

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIK 145
             +K+   +++    +P   S++V  F  + +      +  P V+K   G  S G++ ++
Sbjct: 275 CTNKVFLTELLQRHNIPAPRSVIVQSFDPNWKSYLMEHLEFPMVLKIPDGAFSRGVVKVR 334

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYEL 204
            +Q +  +   ++ +     +L + +     +   GV+    +   +  + +  +  Y+ 
Sbjct: 335 NEQELENEA--NALFEKSALILAQAFMPTDFDWRIGVLNHQPIFACKYMMSRGHWQIYQH 392

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             S   S+          + K V  +A  A   IG       D     +  +V+ +E+N 
Sbjct: 393 HSSGRVSSGGFETLDLKQVPKHVVDVALKAANLIGGGLYG-VD--LKEIDGQVYVIEVND 449

Query: 265 QP 266
            P
Sbjct: 450 NP 451


>gi|294495632|ref|YP_003542125.1| carbamoyl-phosphate synthase large subunit [Methanohalophilus mahii
           DSM 5219]
 gi|292666631|gb|ADE36480.1| carbamoyl-phosphate synthase large subunit [Methanohalophilus mahii
           DSM 5219]
          Length = 1079

 Score = 69.0 bits (168), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 27/221 (12%), Positives = 80/221 (36%), Gaps = 17/221 (7%)

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCP--SILVNRFTMDSQHLISPPYVIKPLKGGS 137
             +      ++ D+ +  Q ++   +           +  ++    I  P +++P     
Sbjct: 661 MGTSPENMDVAEDREKFNQRLAKMNINQPDAGYATSEKEALEVADDIGYPVLVRPSYVLG 720

Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPK 196
              + ++     +   ++++   +    +LI+ +++G +E+    + D    +    +  
Sbjct: 721 GRAMEIVYDSADLERYMIEAVRVSPEHPILIDDFLEGAVEIDVDAVSDGKDVLIGAIMEH 780

Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256
            +       +S  ++  + P  +  +I + V+        A+  +G+   +        +
Sbjct: 781 IEEAGV---HSGDSACVIPPYDLSEEILETVRDYTRKIAMALEVKGL--INIQMATKDGE 835

Query: 257 VFWLEIN-----VQPGMTPVSIFPEMAAYA----GYSFREL 288
           V+ LE N       P ++  S  P     A    G+S ++L
Sbjct: 836 VYVLEANPRSSRTIPFVSKSSGIPLAKIAAQVIIGHSLKDL 876



 Score = 63.6 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 52/321 (16%), Positives = 116/321 (36%), Gaps = 45/321 (14%)

Query: 4   LMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNV-LHGNF 62
           +M G ++E + S   G     +L + GF+V  ++ + +  +    +  D  +   L    
Sbjct: 19  IMIGQAAEFDFS---GSQACRSLREEGFEVVLVNSNPATIMTDPEM-ADAVYIEPLEAPL 74

Query: 63  -GE-------DGLVQAI-----------------LELLEIPYTHSGILASALSMDKMRSK 97
            GE       DG++  +                 LE   +    + + A   + D+   K
Sbjct: 75  IGEIIEKERPDGIIAGLGGQTGLNVTSELAELGILEKYGVEMLGTPLDAITNTEDRELFK 134

Query: 98  QVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
           Q + + G  V  S  ++  +   +    +  P +++P       G  +    + +   + 
Sbjct: 135 QTMENIGEKVPRSKAISSLQEAEEVIDELGLPIIVRPAYTLGGAGGGIAHTKEELLQIVD 194

Query: 156 QSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKS-DFYSYELKYSSLNSTH 213
           +    +  +Q+L+E+ V G  E    VM D++     I   ++ D            S  
Sbjct: 195 RGIRLSRINQVLVEESVLGWKEFEYEVMRDSNDTCIVICNMENIDPMGVHT----GESIV 250

Query: 214 VLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
           V P++ +  + ++ ++  A    + +G  G     F       +   +E+N  P ++  S
Sbjct: 251 VTPSQTLNDEEHQMLRTAAIKIIRELGIEGGCNIQF--ATKDGEYRVVEVN--PRVSRSS 306

Query: 273 IFPEMAAYAGYSFRELLLWMV 293
                +   GY    +   +V
Sbjct: 307 --ALASKATGYPIARVTAKIV 325


>gi|260771462|ref|ZP_05880387.1| ribosomal protein S6 modification protein-related protein [Vibrio
           furnissii CIP 102972]
 gi|260613588|gb|EEX38782.1| ribosomal protein S6 modification protein-related protein [Vibrio
           furnissii CIP 102972]
          Length = 483

 Score = 69.0 bits (168), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 29/182 (15%), Positives = 70/182 (38%), Gaps = 10/182 (5%)

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIK 145
             +K+   +++    +P   S++V  F  + +      +  P V+K   G  S G++ ++
Sbjct: 275 CTNKVFLTELLQRHNIPAPRSVIVQSFDPNWKAYLMEHLEFPMVLKIPDGAFSRGVVKVR 334

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYEL 204
            +Q +  +   ++ +     +L + +     +   GV+    +   +  + +  +  Y+ 
Sbjct: 335 NEQELENEA--NALFEKSALILAQAFMPTDFDWRIGVLNHQPIFACKYMMSRGHWQIYQH 392

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             S   S+          + K V  +A  A   IG       D     +  +V+ +E+N 
Sbjct: 393 HSSGRVSSGGFETLDLKQVPKHVVDVALKAANLIGGGLYG-VD--LKEIDGQVYVIEVND 449

Query: 265 QP 266
            P
Sbjct: 450 NP 451


>gi|241661737|ref|YP_002980097.1| carbamoyl-phosphate synthase L chain ATP-binding [Ralstonia
           pickettii 12D]
 gi|240863764|gb|ACS61425.1| Carbamoyl-phosphate synthase L chain ATP-binding [Ralstonia
           pickettii 12D]
          Length = 664

 Score = 69.0 bits (168), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 36/219 (16%), Positives = 76/219 (34%), Gaps = 17/219 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E            + +      A     +K  +K+++ + GVP  P    
Sbjct: 83  AVHPGYGFLAESDAFAGACADAGLVFIGPPAGAIRAMGNKAGAKRLMEAAGVPCVPGYQG 142

Query: 114 NRFTM----DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGD 164
              +     D    I  P +IK   GG   G+  + + +++   L        +++  G+
Sbjct: 143 EDQSATRMADEAARIGYPVMIKAAAGGGGRGMRRVDRPEALAAALQSARSEAENAFGSGE 202

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
            +L +  V+   +   V  D   +V  +            K             +  ++ 
Sbjct: 203 LILEKAIVEPRHIEIQVFADTHGNVVHLGERDCSVQRRHQK----VIEESPSPAVSPELR 258

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
             +  ++  A +AIG  G    +FL  P     +++E+N
Sbjct: 259 ARMGAVSVAAARAIGYVGAGTLEFLLAP-DGAFYFMEMN 296


>gi|2598551|emb|CAA03928.1| carbamoylphosphate synthetase [Lactococcus lactis subsp. cremoris
           MG1363]
          Length = 1064

 Score = 69.0 bits (168), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 46/268 (17%), Positives = 99/268 (36%), Gaps = 30/268 (11%)

Query: 25  ALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNVLHGNFG 63
           AL++ G++V  ++        DR +                +L   +PD     L G  G
Sbjct: 36  ALKEEGYEVVLVNSNPATIMTDREIADTVYIEPITLEFVSKILRKERPDALLPTLGGQTG 95

Query: 64  EDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFT 117
            +  ++     ILE L +    + + A   + D+   K++  S   P+C S +       
Sbjct: 96  LNMAMELSKTGILEELNVELLGTKLSAIDQAEDRELFKELCESINEPLCASDIATTVEEA 155

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IE 176
           ++    I  P ++ P       G  +   ++ +   +      +   Q LIE+ + G  E
Sbjct: 156 INIADKIGYPIIVGPAFTMGGTGGGICDTEEELREIVANGLKLSPVTQCLIEESIAGYKE 215

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +   VM D++ +   I V   + +     ++  +        +  + Y+ ++  +    +
Sbjct: 216 IEYEVMRDSADNA--IVVCNMENFDPVGVHTGDSIVFAPSQTLSDNEYQMLRDASLNIIR 273

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINV 264
           A+   G        DP S +   +E+N 
Sbjct: 274 ALKIEGGCNVQLALDPNSYEYRVIEVNP 301



 Score = 65.9 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 30/228 (13%), Positives = 76/228 (33%), Gaps = 19/228 (8%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYV 129
           L    +    + +     + D+   ++ +    +P  P            + + I  P +
Sbjct: 646 LSKAGVKILGTQVEDLDRAEDRDLFEKALQDLDIPQPPGATATNEEEAVANANKIGYPVL 705

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS--- 186
           I+P        + +I  ++ +   + ++   +    +L++ Y+ G E     + D     
Sbjct: 706 IRPSFVLGGRAMEIINNEKDLRDYMNRAVKASPEHPVLVDSYLQGQECEVDAICDGKEVL 765

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISR 245
           L      + ++  +S        +S  V P   +   I   +          + C G+  
Sbjct: 766 LPGIMEHIERAGVHS-------GDSMAVYPPQNLSQAIIDTIVDYTKRLAIGLNCIGMMN 818

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
             F+      +V+ +E+N +   T     P ++        +L   M+
Sbjct: 819 IQFVI--YEEQVYVIEVNPRASRT----VPFLSKVTNIPMAQLATQMI 860


>gi|295104532|emb|CBL02076.1| Phosphoribosylamine-glycine ligase [Faecalibacterium prausnitzii
           SL3/3]
          Length = 423

 Score = 69.0 bits (168), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 33/192 (17%), Positives = 67/192 (34%), Gaps = 20/192 (10%)

Query: 93  KMRSKQVVSSCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150
           K + K+     G+      +V+           +  P V+KP  G  +     +  D+ +
Sbjct: 115 KSKMKEYYQKAGIATARYHMVDDLAGCKAFVEQVGYPVVVKPDNGVGASDTHRLSTDKEL 174

Query: 151 PLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLN 210
              L      +     ++E++V     +   + DA  +    A   S     ++  +  N
Sbjct: 175 EEFLAYKEKEHPDVAYIMEEFVRAEVNSYDAIIDAHGNPIFEAGNVSPVSIMDIVNNDDN 234

Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR---SDFLFDPLS-------RKVFWL 260
           S + +   +P D     +  A  +    G +  SR    +F              ++  L
Sbjct: 235 SIYYIIKDLPEDTRAAGRA-AVKSF---GVK--SRFVHFEFFRMTEDQASMGKKGQIVAL 288

Query: 261 EINVQP--GMTP 270
           E+N++P  G TP
Sbjct: 289 EVNMRPCGGFTP 300


>gi|238758985|ref|ZP_04620156.1| Carbamoyl-phosphate synthase large chain [Yersinia aldovae ATCC
           35236]
 gi|238702796|gb|EEP95342.1| Carbamoyl-phosphate synthase large chain [Yersinia aldovae ATCC
           35236]
          Length = 1077

 Score = 69.0 bits (168), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 49/319 (15%), Positives = 108/319 (33%), Gaps = 52/319 (16%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D +              V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +    Q +L    +    +   A   + D+ R    +   G+    S +
Sbjct: 89  TMGGQTALNCALELERQGVLAEFGVTMIGATADAIDKAEDRRRFDIAMKKIGLDTARSGI 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     +     +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHNMEEALAVAADVGFPCIIRPSFTMGGSGGGIAYNREEFEEICERGLDLSPTKELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + +   +   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIEN----FDAMGIHTGDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV-----------QPGMTPVSIFP 275
           +  +    + IG   G S   F  +P + ++  +E+N              G        
Sbjct: 265 RNASMAVLREIGVETGGSNVQFSVNPKNGRLIIIEMNPRVSRSSALASKATGF----PIA 320

Query: 276 EMAA--YAGYSFRELLLWM 292
           ++AA    GY+  EL+  +
Sbjct: 321 KIAAKLAVGYTLDELMNDI 339



 Score = 60.9 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 33/221 (14%), Positives = 85/221 (38%), Gaps = 14/221 (6%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           LE   +P   +   A   + D+ R +Q V+  G+    +  V      ++    +  P V
Sbjct: 654 LEAAGVPIIGTSPDAIDRAEDRERFQQAVNRLGLKQPANATVATIEQAVEKAAGLGYPLV 713

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  +  +      + S ++   +L+++++ D +E+    + D    
Sbjct: 714 VRPSYVLGGRAMEIVYDEVDLRRYFQNAVSVSNDAPVLLDRFLDDAVEVDVDAICDGERV 773

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           +    +   +    +    S +S   LPA  +  +I   +++        +  RG+    
Sbjct: 774 LIGGIMEHIE----QAGVHSGDSACSLPAYTLSKEIQDVMRQQVEKLAFELCVRGLMNVQ 829

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           F     + +V+ +E+N +   T     P ++   G    ++
Sbjct: 830 FAV--KNNEVYLIEVNPRAART----VPFVSKATGMPLAKI 864


>gi|46237527|emb|CAG14974.1| acetyl-CoA carboxylase complex, alpha-chain [Streptomyces
           antibioticus]
          Length = 572

 Score = 69.0 bits (168), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 34/221 (15%), Positives = 73/221 (33%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLV-QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP----VC 108
            +H  +G   E+    QA+L+   + +      A     DK+ ++ +    G P      
Sbjct: 78  AIHPGYGFLSENAEFAQAVLD-AGLIWIGPPPQAIRDLGDKVAARHIAQRAGAPLVAGTP 136

Query: 109 PSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL----DLLQSSSWNHGD 164
             +      +        P  IK   GG   G+ V +  + +P      + ++ +     
Sbjct: 137 DPVSGAEEVVAFAEEHGLPIAIKAAFGGGGRGLKVARTLEEVPELYESAVREAVAAFGRG 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           +  +E+Y+D    +    + D   +V  ++           K             +  + 
Sbjct: 197 ECFVERYLDRPRHVETQCLADKHGNVVVVSTRDCSLQRRHQK----LVEEAPAPFLSEEQ 252

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             E+ R +    +  G  G    +FL       + +LE+N 
Sbjct: 253 MAELYRASKAILKEAGYEGAGTCEFLV-GQDGTISFLEVNT 292


>gi|302905194|ref|XP_003049218.1| hypothetical protein NECHADRAFT_45465 [Nectria haematococca mpVI
           77-13-4]
 gi|256730153|gb|EEU43505.1| hypothetical protein NECHADRAFT_45465 [Nectria haematococca mpVI
           77-13-4]
          Length = 495

 Score = 69.0 bits (168), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 37/225 (16%), Positives = 80/225 (35%), Gaps = 26/225 (11%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS-CGVPVCPSIL 112
            +H  +G   E+    A +    + +        A   DK  +K+ +++   VP+ P   
Sbjct: 95  AIHPGYGYLSENADFAAAVGSAGLVFLGPSPQTIAALGDKREAKEFLAARSSVPLVPGYG 154

Query: 113 VNRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGD 164
                 D        I  P +IK   GG   G+ ++   +     L     ++       
Sbjct: 155 GLDQDPDLLEKEADRIGYPVMIKASAGGGGKGMRIVHSKEDFRESLQRCTSEAGRLFGSA 214

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVT----EIAVPKSDFYSYELKYSSLNSTHVLPAKI 219
             LIE+Y++ G  +   + GD    V+    E +V + +    E               +
Sbjct: 215 HCLIEKYIEAGKHVEMQIFGDGETAVSFLDRECSVQRRNQKIIE---------ESPCPWL 265

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             ++ +++   A    + +        +F+ D  + + ++LE+N 
Sbjct: 266 SAEMRQDMSNSALEIARLLKYESAGTVEFIVDIKNERYYFLEVNT 310


>gi|164658283|ref|XP_001730267.1| hypothetical protein MGL_2649 [Malassezia globosa CBS 7966]
 gi|159104162|gb|EDP43053.1| hypothetical protein MGL_2649 [Malassezia globosa CBS 7966]
          Length = 1184

 Score = 69.0 bits (168), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 35/235 (14%), Positives = 78/235 (33%), Gaps = 17/235 (7%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
             +  +    + D+     +G   E+      +E   I +            DK +++ +
Sbjct: 96  DDIIRIAKENEVDMIHPG-YGFLAENPEFARKVEDAGIAFIGPRPETIDALGDKTKARDL 154

Query: 100 VSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL--- 152
             +  VP+ P     I            +  P +IK   GG   G+ V+           
Sbjct: 155 ARAANVPIVPGTPGPISSYEAAEPFIKEVGFPVIIKAAMGGGGRGMRVVWSMNDFQASFE 214

Query: 153 -DLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLN 210
             + ++ S      + IE+++D    +   ++ D   +               ++     
Sbjct: 215 RAVSEARSAFGDPTVFIERFLDKPRHIEVQLLSDGQGNCI-----HLFERDCSVQRRHQK 269

Query: 211 STHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              V PA ++   + + +   A    +    R    ++FL D  +R  +++EIN 
Sbjct: 270 VVEVAPATQLDDSVRQAILEDAVKIARTAQYRNAGTAEFLVDQQNRH-YFIEINP 323


>gi|292572242|gb|ADE30157.1| Acetyl-CoA carboxylase, biotin carboxylase [Rickettsia prowazekii
           Rp22]
          Length = 665

 Score = 69.0 bits (168), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 84/222 (37%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+     IL+   +              DK+ +K++    GV   P  + 
Sbjct: 81  AVHPGYGFLSENPNFANILKREGVVLIGPSAGTIKKMGDKIEAKKIAIEAGVSTVPGYMG 140

Query: 114 N----RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD-----LLQSSSWNHGD 164
                +  +D    I  P ++K   GG   G+ V+     +        L  ++S++  D
Sbjct: 141 TIKDVKQAIDIAKEIGFPVIVKATAGGGGRGMRVVNNPAEMANAFESAKLEAANSFS-DD 199

Query: 165 QLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           +L IE+ +     +   ++ D   +   +   +     +  K      +  +   I  ++
Sbjct: 200 RLFIEKLIQTPRHIEIQLIADQYGNSVCLGERECSIQRHHQKVIEEAPSSFITENIRHEM 259

Query: 224 YKEVQRLAFLA-HQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           Y++V  L+    + + G       +F+ D  ++  ++LE+N 
Sbjct: 260 YRQVISLSQKVGYYSAGT-----VEFIVD-SNKNFYFLEMNT 295


>gi|294946793|ref|XP_002785169.1| Alanine-anticapsin ligase bacD, putative [Perkinsus marinus ATCC
           50983]
 gi|239898731|gb|EER16965.1| Alanine-anticapsin ligase bacD, putative [Perkinsus marinus ATCC
           50983]
          Length = 260

 Score = 69.0 bits (168), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 40/223 (17%), Positives = 87/223 (39%), Gaps = 37/223 (16%)

Query: 71  ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ--HLISPPY 128
           + E   +P     ++ +A   DK ++++ +   G+P     L++           +  P 
Sbjct: 24  LTEAFGLPGPGPHVVEAAR--DKYKTREALERHGLPRTTHFLISCEDDIEPAGDFVGYPA 81

Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDL---------------------------LQSSSWN 161
           V+KP+ G +SLG+  +   + +                                 +++  
Sbjct: 82  VMKPVSGAASLGVKKVNSHEELLAVYRETQQLLSELVVSSGALERKNEHSDPDAVAAAGR 141

Query: 162 HGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL 221
               +++E+Y+DG E+   V+    L  T   V  +     +  Y S  +  V+P+ +P 
Sbjct: 142 ISTVVILEEYLDGQEVDVDVVLSPGLGCTFAVVTDNAP--TKEPYFSE-TWGVIPSALPR 198

Query: 222 DIYKEVQRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEIN 263
           D   ++  LA  + +A+G   G+   +  +   SR    +E+N
Sbjct: 199 DRCDQLVDLAVSSVKALGFDSGVFHVEAKYT--SRGPRLIEVN 239


>gi|315445709|ref|YP_004078588.1| acetyl/propionyl-CoA carboxylase, subunit alpha [Mycobacterium sp.
           Spyr1]
 gi|315264012|gb|ADU00754.1| acetyl/propionyl-CoA carboxylase, alpha subunit [Mycobacterium sp.
           Spyr1]
          Length = 599

 Score = 69.0 bits (168), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 39/223 (17%), Positives = 76/223 (34%), Gaps = 21/223 (9%)

Query: 56  NVLHGNFG---EDGLV-QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           N +H  +G   E+    QA+L+   + +      +     DK+ ++ + +    P+ P  
Sbjct: 83  NAIHPGYGFLSENADFAQAVLD-AGLIWIGPSPQSIRDLGDKVTARHIAARANAPLVPGT 141

Query: 112 LVNRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL----DLLQSSSWNHG 163
                  D           P  IK   GG   G+ V +  + IP        ++ +    
Sbjct: 142 PDPVKDADEVVAFAKEYGVPVAIKAAFGGGGRGMKVARTIEEIPELFDSATREAVAAFGR 201

Query: 164 DQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPL 221
            +  +E+Y+D    +   V+ D   +V       +      L+          PA  +  
Sbjct: 202 GECFVERYLDKPRHVEAQVIADTHGNVVV-----AGTRDCSLQRRFQKLVEEAPAPFLTD 256

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              KE+   A    +  G  G    ++L       + +LE+N 
Sbjct: 257 AQRKEIHESAKRICKEAGYYGAGTVEYLV-GQDGLISFLEVNT 298


>gi|312178707|gb|ADQ39289.1| carbamyl-phosphate synthase large subunit [uncultured bacterium]
          Length = 356

 Score = 69.0 bits (168), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 51/280 (18%), Positives = 98/280 (35%), Gaps = 37/280 (13%)

Query: 18  SGKACASALEDAGFKVSQID---------------------VDRSVGLVLA-HLKPDLAF 55
           SG     +L + G +   I+                       +S+  +L  H + D   
Sbjct: 29  SGTQALRSLREDGIETILINSNPATIMTDPSMADHVYLKPLTTKSIIEILKDHPQIDAVL 88

Query: 56  NVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
             + G    +  ++     I E   +      I A  ++ D+ + KQ++S  GVPV P+ 
Sbjct: 89  PTMGGQTALNLCIEADEKGIWEDFNVKIIGVDIDAINITEDREKFKQLMSRIGVPVAPAH 148

Query: 112 LVNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
               F    +       P VI+P       G   +  +      L +    +   ++LI+
Sbjct: 149 TATSFLQGKEIAQEFGFPLVIRPSFTLGGTGASFVHNEDQFDELLTRGLEASPIHEVLID 208

Query: 170 QYVDG-IELTCGVMGDA-SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKE 226
           + + G  E    ++ D     V   ++   D           +S  V PA  +    +++
Sbjct: 209 KALLGWKEYELELLRDKNDNVVIICSIENMDPMGIHT----GDSITVAPAMTLSDVTFQK 264

Query: 227 VQRLAFLAHQAIG-CRGISRSDFLFDPLSRK-VFWLEINV 264
           ++ LA    ++IG   G     F   P   + +  +EIN 
Sbjct: 265 MRDLAIKMMRSIGDFAGGCNVQFAVSPDENEDIIAIEINP 304


>gi|292493677|ref|YP_003529116.1| carbamoyl-phosphate synthase, large subunit [Nitrosococcus
           halophilus Nc4]
 gi|291582272|gb|ADE16729.1| carbamoyl-phosphate synthase, large subunit [Nitrosococcus
           halophilus Nc4]
          Length = 1073

 Score = 69.0 bits (168), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 48/278 (17%), Positives = 97/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     +L+  G++V  +         D +             +V  +L   +PD    
Sbjct: 29  SGAQACKSLKAEGYRVILVNSNPATIMTDPEMADATYIEPITWETVARILEKERPDALLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +    + ILE   +    +   A   + D+   +  +   G+ V  S +
Sbjct: 89  TMGGQTALNCALDLAREGILERYGVEMIGASEDAINKAEDRDLFRLAMQKIGLDVPRSAI 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                     Q  +  P +I+P       G  +    +       +    +   +LLIE+
Sbjct: 149 AYSLEEAQQVQRDLGFPIIIRPSFTLGGSGGGIAYNREEFVEICERGLDLSPNSELLIEE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            V G  E    V+ D   +   I   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SVLGWKEFEMEVVRDCKDNCIIICAIEN----FDPMGVHTGDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
           +  A    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RDAAIAVLREIGVDTGGSNVQFAINPENGRLIIIEMNP 302



 Score = 61.3 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/196 (11%), Positives = 75/196 (38%), Gaps = 8/196 (4%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           LE    P   +   +  L+ D+ R ++++   G    P+         +     +  P V
Sbjct: 653 LEAAGAPIIGTSPDSIDLAEDRERFQRLIERLGFKQPPNRTARTQEEALRLADEVGYPLV 712

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLD 188
           ++P        + ++     +   + ++ + ++   +L+++++D  IE+    + D    
Sbjct: 713 VRPSYVLGGRAMEIVYNMDELNRYMREAVTVSNDSPVLLDRFLDEAIEVDVDAICDGERV 772

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           +    +   +       +S  ++  + P  +   +  +++   +   + +   G+  + F
Sbjct: 773 IVGGIMEHIEQAGV---HSGDSACALPPFSLSAAVQDQLREQVYKMARELKVVGLMNTQF 829

Query: 249 LFDPLSRKVFWLEINV 264
                +  ++ LE+N 
Sbjct: 830 AI--QANDIYVLEVNP 843


>gi|228935202|ref|ZP_04098028.1| Carbamoyl-phosphate synthase large chain [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228824367|gb|EEM70173.1| Carbamoyl-phosphate synthase large chain [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
          Length = 1018

 Score = 69.0 bits (168), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 42/260 (16%), Positives = 95/260 (36%), Gaps = 13/260 (5%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMR 95
             V  ++   +PD     L G  G +  V+     +LE   +    + + A   + D+  
Sbjct: 18  EFVSRIIRKERPDAILPTLGGQTGLNMAVELAKSGVLEECGVEILGTKLSAIEQAEDRDL 77

Query: 96  SKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153
            + ++     P  PS +++           I  P +++P       G  +   ++ +   
Sbjct: 78  FRTLMQELNEPTPPSEIIHNLDEAYGFVKEIGYPVIVRPAFTLGGTGGGICHNEEELIEI 137

Query: 154 LLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212
           +      +   Q L+E+ + G  E+   VM D++ +   I V   +       ++  +  
Sbjct: 138 VTSGLKHSPVTQCLLEKSIAGCKEIEYEVMRDSNDNA--IVVCNMENIDPVGVHTGDSIV 195

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
                 +    Y+ ++  +    +A+G  G        DP S + + +E+N  P ++  S
Sbjct: 196 VAPSQTLSDREYQMLRNTSLRIIRALGIEGGCNVQLALDPYSFQYYVIEVN--PRVSRSS 253

Query: 273 IFPEMAAYAGYSFRELLLWM 292
                +   GY   +L   +
Sbjct: 254 --ALASKATGYPIAKLAAKI 271



 Score = 66.3 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 37/283 (13%), Positives = 100/283 (35%), Gaps = 39/283 (13%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ------ 69
           A+++AG++   I         D   S  L    L  +   +++     E  +VQ      
Sbjct: 526 AIKEAGYEAIIINNNPETVSTDFSISDKLYFEPLTIEDVMHIIDLEKPEGVIVQFGGQTA 585

Query: 70  ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHL 123
               A LE   +    + +     + D+ + +  ++  G+P             +     
Sbjct: 586 INLAAKLEEHGVKILGTSLEDLDRAEDRDKFEAALTKLGIPQPVGKTATTVEQAVAIAEE 645

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + ++ + + +   +  +   +    +LI++Y+ G E+    + 
Sbjct: 646 IGYPVLVRPSYVLGGRAMEIVYRQEELLHYMKNAVKVHADHPVLIDRYMVGKEIEVDAIS 705

Query: 184 DAS---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIG 239
           D     +      + ++  +S        +S  V P + +   + +++        + + 
Sbjct: 706 DGENVFIPGIMEHIERAGVHS-------GDSIGVYPPQSLSEKLKEQIIEHTIALGKGLN 758

Query: 240 CRGISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277
             G+    F+      +V+ +E+N       P ++ ++  P  
Sbjct: 759 IVGLLNIQFVV--FEDQVYVIEVNPRASRTVPFLSKITGVPMA 799


>gi|228928935|ref|ZP_04091967.1| Carbamoyl-phosphate synthase large chain [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228947606|ref|ZP_04109896.1| Carbamoyl-phosphate synthase large chain [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|229123400|ref|ZP_04252604.1| Carbamoyl-phosphate synthase large chain [Bacillus cereus 95/8201]
 gi|228660176|gb|EEL15812.1| Carbamoyl-phosphate synthase large chain [Bacillus cereus 95/8201]
 gi|228812126|gb|EEM58457.1| Carbamoyl-phosphate synthase large chain [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228830742|gb|EEM76347.1| Carbamoyl-phosphate synthase large chain [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
          Length = 1018

 Score = 69.0 bits (168), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 42/260 (16%), Positives = 96/260 (36%), Gaps = 13/260 (5%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMR 95
             V  ++   +PD     L G  G +  V+     +LE   +    + + A   + D+  
Sbjct: 18  EFVSRIIRKERPDAILPTLGGQTGLNMAVELAKSGVLEECGVEILGTKLSAIEQAEDRDL 77

Query: 96  SKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153
            + ++     P  PS +++         + I  P +++P       G  +   ++ +   
Sbjct: 78  FRTLMQELNEPTPPSEIIHNLDEAYGFVNEIGYPVIVRPAFTLGGTGGGICHNEEELIEI 137

Query: 154 LLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212
           +      +   Q L+E+ + G  E+   VM D++ +   I V   +       ++  +  
Sbjct: 138 VTSGLKHSPVTQCLLEKSIAGCKEIEYEVMRDSNDNA--IVVCNMENIDPVGVHTGDSIV 195

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
                 +    Y+ ++  +    +A+G  G        DP S + + +E+N  P ++  S
Sbjct: 196 VAPSQTLSDREYQMLRNTSLRIIRALGIEGGCNVQLALDPYSFQYYVIEVN--PRVSRSS 253

Query: 273 IFPEMAAYAGYSFRELLLWM 292
                +   GY   +L   +
Sbjct: 254 --ALASKATGYPIAKLAAKI 271



 Score = 65.5 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 37/283 (13%), Positives = 100/283 (35%), Gaps = 39/283 (13%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ------ 69
           A+++AG++   I         D   S  L    L  +   +++     E  +VQ      
Sbjct: 526 AIKEAGYEAIIINNNPETVSTDFSISDKLYFEPLTIEDVMHIIDLEKPEGVIVQFGGQTA 585

Query: 70  ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHL 123
               A LE   +    + +     + D+ + +  ++  G+P             +     
Sbjct: 586 INLAAKLEEHGVKILGTSLEDLDRAEDRDKFEAALTKLGIPQPVGKTATTVEQAVAIAEE 645

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + ++ + + +   +  +   +    +LI++Y+ G E+    + 
Sbjct: 646 IGYPVLVRPSYVLGGRAMEIVYRQEELLHYMKNAVKVHADHPVLIDRYMVGKEIEVDAIS 705

Query: 184 DAS---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIG 239
           D     +      + ++  +S        +S  V P + +   + +++        + + 
Sbjct: 706 DGENVFIPGIMEHIERAGVHS-------GDSIGVYPPQSLSEKLKEQIIEHTIALGKGLN 758

Query: 240 CRGISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277
             G+    F+      +V+ +E+N       P ++ ++  P  
Sbjct: 759 IVGLLNIQFVVFK--DQVYVIEVNPRASRTVPFLSKITGVPMA 799


>gi|229186127|ref|ZP_04313296.1| Carbamoyl-phosphate synthase large chain [Bacillus cereus BGSC 6E1]
 gi|228597303|gb|EEK54954.1| Carbamoyl-phosphate synthase large chain [Bacillus cereus BGSC 6E1]
          Length = 1018

 Score = 69.0 bits (168), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 42/260 (16%), Positives = 96/260 (36%), Gaps = 13/260 (5%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMR 95
             V  ++   +PD     L G  G +  V+     +LE   +    + + A   + D+  
Sbjct: 18  EFVSRIIRKERPDAILPTLGGQTGLNMAVELAKSGVLEECGVEILGTKLSAIEQAEDRDL 77

Query: 96  SKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153
            + ++     P  PS +++         + I  P +++P       G  +   ++ +   
Sbjct: 78  FRTLMQELNEPTPPSEIIHNLDEAYGFVNEIGYPVIVRPAFTLGGTGGGICHNEEELIEI 137

Query: 154 LLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212
           +      +   Q L+E+ + G  E+   VM D++ +   I V   +       ++  +  
Sbjct: 138 VTSGLKHSPVTQCLLEKSIAGCKEIEYEVMRDSNDNA--IVVCNMENIDPVGVHTGDSIV 195

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
                 +    Y+ ++  +    +A+G  G        DP S + + +E+N  P ++  S
Sbjct: 196 VAPSQTLSDREYQMLRNTSLRIIRALGIEGGCNVQLALDPYSFQYYVIEVN--PRVSRSS 253

Query: 273 IFPEMAAYAGYSFRELLLWM 292
                +   GY   +L   +
Sbjct: 254 --ALASKATGYPIAKLAAKI 271



 Score = 65.5 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 37/283 (13%), Positives = 100/283 (35%), Gaps = 39/283 (13%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ------ 69
           A+++AG++   I         D   S  L    L  +   +++     E  +VQ      
Sbjct: 526 AIKEAGYEAIIINNNPETVSTDFSISDKLYFEPLTIEDVMHIIDLEKPEGVIVQFGGQTA 585

Query: 70  ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHL 123
               A LE   +    + +     + D+ + +  ++  G+P             +     
Sbjct: 586 INLAAKLEEHGVKILGTSLEDLDRAEDRDKFEAALTKLGIPQPVGKTATTVEQAVAIAEE 645

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + ++ + + +   +  +   +    +LI++Y+ G E+    + 
Sbjct: 646 IGYPVLVRPSYVLGGRAMEIVYRQEELLHYMKNAVKVHADHPVLIDRYMVGKEIEVDAIS 705

Query: 184 DAS---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIG 239
           D     +      + ++  +S        +S  V P + +   + +++        + + 
Sbjct: 706 DGENVFIPGIMEHIERAGVHS-------GDSIGVYPPQSLSEKLKEQIIEHTIALGKGLN 758

Query: 240 CRGISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277
             G+    F+      +V+ +E+N       P ++ ++  P  
Sbjct: 759 IVGLLNIQFVVFK--DQVYVIEVNPRASRTVPFLSKITGVPMA 799


>gi|15604467|ref|NP_220985.1| propionyl-COA carboxylase alpha chain precursor (pccA) [Rickettsia
           prowazekii str. Madrid E]
 gi|3861161|emb|CAA15061.1| PROPIONYL-COA CARBOXYLASE ALPHA CHAIN PRECURSOR (pccA) [Rickettsia
           prowazekii]
          Length = 665

 Score = 69.0 bits (168), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 84/222 (37%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+     IL+   +              DK+ +K++    GV   P  + 
Sbjct: 81  AVHPGYGFLSENPNFANILKREGVVLIGPSAGTIKKMGDKIEAKKIAIEAGVSTVPGYMG 140

Query: 114 N----RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD-----LLQSSSWNHGD 164
                +  +D    I  P ++K   GG   G+ V+     +        L  ++S++  D
Sbjct: 141 TIKDVKQAIDIAKEIGFPVIVKATAGGGGRGMRVVNNPAEMANAFESAKLEAANSFS-DD 199

Query: 165 QLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           +L IE+ +     +   ++ D   +   +   +     +  K      +  +   I  ++
Sbjct: 200 RLFIEKLIQTPRHIEIQLIADQYGNSVCLGERECSIQRHHQKVIEEAPSSFITENIRHEM 259

Query: 224 YKEVQRLAFLA-HQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           Y++V  L+    + + G       +F+ D  ++  ++LE+N 
Sbjct: 260 YRQVISLSQKVGYYSAGT-----VEFIVD-SNKNFYFLEMNT 295


>gi|226946002|ref|YP_002801075.1| phosphoribosylglycinamide formyltransferase 2 [Azotobacter
           vinelandii DJ]
 gi|259547215|sp|C1DDZ2|PURT_AZOVD RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|226720929|gb|ACO80100.1| Phosphoribosylglycinamide formyltransferase [Azotobacter vinelandii
           DJ]
          Length = 393

 Score = 69.0 bits (168), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 48/298 (16%), Positives = 103/298 (34%), Gaps = 61/298 (20%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-VDRSVGLVLAHLKPDLAFNVLHG 60
            +L G  S E    L  GK     L+  G +V  +D    +  + +AH       N+L G
Sbjct: 15  VLLCG--SGE----L--GKEVVIELQRFGVEVIAVDRYADAPAMQVAHRSH--VINMLDG 64

Query: 61  NFGEDGLVQAILELLEIPYT------------------HSGILASALSMD-----KMRSK 97
                  ++A++E     Y                      ++ SA + +     +   +
Sbjct: 65  A-----ALRALIEQERPHYIVPEIEAIATATLVELESEGFTVIPSARAANLTMNREGIRR 119

Query: 98  QVVSSCGVPVCPSILVNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD-- 153
                 G+P  P    + F     +   +  P V+KP+   S  G  ++K  + +     
Sbjct: 120 LAAEELGLPTSPYRFADSFEEYRAAAEALGFPCVVKPIMSSSGKGQSLLKGPEQLQAAWD 179

Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYEL----KYSSL 209
             Q        ++++E ++           D   ++T + V  +   ++      +    
Sbjct: 180 YAQEGGRAGKGRVIVEGFI-----------DFDYEITLLTVRHAGETTFCAPIGHRQEKG 228

Query: 210 NSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
           +      P  +      E +R+A    +A+G RG+   +        +V++ E++ +P
Sbjct: 229 DYQESWQPQAMSTTAQAESERIARTVTEALGGRGLFGVELFV--KGDQVWFSEVSPRP 284


>gi|237509123|ref|ZP_04521838.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Burkholderia
           pseudomallei MSHR346]
 gi|235001328|gb|EEP50752.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Burkholderia
           pseudomallei MSHR346]
          Length = 481

 Score = 69.0 bits (168), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 76/220 (34%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+    A +E   + +        A   DK R+++     GVP  P    
Sbjct: 92  AIHPGYGFLSENADFAAQVEAASLIFVGPPARVIATMGDKARARETARRAGVPTVPGSEG 151

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK----DQSIPLDLLQSSSWNHGDQ 165
            +       +    I  P +IK   GG   GI V          +PL   ++ +      
Sbjct: 152 VVASLDGAREVAARIGYPVMIKAAAGGGGRGIRVAHDAAQLAAQLPLAQREAQAAFGDGG 211

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+++     +   ++GD   +V  +   +        K             +   + 
Sbjct: 212 VYLERFIARARHIEVQILGDGE-NVIHLFERECSLQRRRQKIL----EEAPSPSLTPALR 266

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +   A    + +  RG    ++LFD    + +++E+N 
Sbjct: 267 DTLCASATRLARQVSYRGAGTLEYLFDDARGEFYFIEMNT 306


>gi|325206768|gb|ADZ02221.1| carbamoyl-phosphate synthase, large subunit [Neisseria meningitidis
           M04-240196]
          Length = 1071

 Score = 69.0 bits (168), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 28/192 (14%), Positives = 72/192 (37%), Gaps = 8/192 (4%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYVIKPL 133
            +    +   +   + D+ R ++V++  G+   P+ + +           I  P V++P 
Sbjct: 652 GVNIIGTSADSIDAAEDRERFQKVLNDLGLRQPPNRIAHNEEEALVKAEEIGYPLVVRPS 711

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEI 192
                  + ++   + +   + ++   +    +L++ ++ + IE+    + D    V   
Sbjct: 712 YVLGGRAMQIVHSAEELQKYMREAVQVSEDSPVLLDFFLNNAIEVDVDCVSDGKDVVIGG 771

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            +   +       +S  +   + P  +  +I  E++R       A+G  G+    F    
Sbjct: 772 IMQHVEQAGI---HSGDSGCSLPPYSLSEEIQDEIRRQTKAMAYALGVVGLMNVQFAV-- 826

Query: 253 LSRKVFWLEINV 264
               VF LE+N 
Sbjct: 827 QDGVVFVLEVNP 838



 Score = 66.3 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 50/278 (17%), Positives = 101/278 (36%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +              DV        ++V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYKVILVNSNPATIMTDPEMADVTYIEPIMWQTVEKIIAKERPDAILP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      +L    +    +   A   + D+ R K+ +   G+    S +
Sbjct: 89  TMGGQTALNCALDLARNGVLAKYNVELIGATEDAIDKAEDRGRFKEAMEKIGLSCPKSFV 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     + +Q  +  P +I+P       G  +            +    +   +LLIEQ
Sbjct: 149 CHTMNEALAAQEQVGFPTLIRPSFTMGGSGGGIAYNKDEFLAICERGFDASPTHELLIEQ 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            V G  E    V+ D + +   I   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SVLGWKEYEMEVVRDKNDNCIIICSIEN----FDPMGVHTGDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RNASLAVLREIGVNTGGSNVQFAVNPENGEMIVIEMNP 302


>gi|308049117|ref|YP_003912683.1| alpha-L-glutamate ligase, RimK family [Ferrimonas balearica DSM
           9799]
 gi|307631307|gb|ADN75609.1| alpha-L-glutamate ligase, RimK family [Ferrimonas balearica DSM
           9799]
          Length = 302

 Score = 69.0 bits (168), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 57/305 (18%), Positives = 109/305 (35%), Gaps = 48/305 (15%)

Query: 20  KACASALEDAGFKVSQIDVDRSVGLVLAHLKP------------DLAFNVLHGNFGEDGL 67
           +   +A E  G ++  I  DR   +V  HL P            D             G 
Sbjct: 22  RRIVAAAEAKGIEIDVIRPDRLEMVVGEHLAPSLYLDQEPVALPDFVLP-------RQGA 74

Query: 68  VQAILELLEIPYT---HSGILASA----LSMDKMRSKQVVSSCGVPVCPSILVNR--FTM 118
             +   L  + +       +L SA    L  DKM+S   ++  GVP+  ++L      T 
Sbjct: 75  TTSYFTLSLLRFLAQQGVKVLNSADAIALCGDKMQSAIALAHQGVPMPAAMLARFPVDTD 134

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD---GI 175
           +    +  P V+K   G    G+++++ +      +    + N   +++ ++YV    G 
Sbjct: 135 EVVRKMGMPVVLKTRSGSQGTGVMLMRNESQFKDMMQLMGNVNPKAEMMFQRYVQSSHGR 194

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
           ++   V+G   +        + +F     K +        P ++  ++ +   R+A L  
Sbjct: 195 DIRVIVVGGKVISAMVRQAAEGEF-----KANVHAGGTTTPQELTPELVELSVRVATLL- 248

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
             +   G+   DF            E N  PG          AA+   +  E+L+ +   
Sbjct: 249 -NLDIAGL---DF-LCGEDGHFLLCEANSSPGFKG-----MEAAHPELNMAEVLVEL-AI 297

Query: 296 ASCLR 300
           A+C R
Sbjct: 298 ATCQR 302


>gi|301299587|ref|ZP_07205849.1| pyruvate carboxylase [Lactobacillus salivarius ACS-116-V-Col5a]
 gi|300852806|gb|EFK80428.1| pyruvate carboxylase [Lactobacillus salivarius ACS-116-V-Col5a]
          Length = 1141

 Score = 69.0 bits (168), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 32/221 (14%), Positives = 78/221 (35%), Gaps = 20/221 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+       E   I +    +    +  DK+ ++ V +S G+   P    
Sbjct: 77  AIHPGYGFLAENEEFAQKCEENGITFIGPSVEHLRIFGDKVEARNVANSAGLHTIPGTND 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
            +   +           P +IK   GG   G+ ++K+ + +     ++ S  +     D+
Sbjct: 137 PVKSLKDVEKFADKHGYPIMIKAAMGGGGRGMRIVKRKEELREAYERARSEANQSFGDDE 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDI 223
           L +E+ + +   +   ++ D   +V              ++  +       P   +  + 
Sbjct: 197 LYVEKMIVNPKHIEVQILADKHGNVM-----HLFERDCSVQRRNQKVIEFAPSITLSQER 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            KE+   A    +++        +FL        +++E+N 
Sbjct: 252 RKEICEAAVNLAKSVNYYNAGTVEFLVTEDD--FYFVEVNP 290


>gi|261417317|ref|YP_003251000.1| carbamoyl-phosphate synthase, large subunit [Fibrobacter
           succinogenes subsp. succinogenes S85]
 gi|261373773|gb|ACX76518.1| carbamoyl-phosphate synthase, large subunit [Fibrobacter
           succinogenes subsp. succinogenes S85]
 gi|302326908|gb|ADL26109.1| carbamoyl-phosphate synthase, large subunit [Fibrobacter
           succinogenes subsp. succinogenes S85]
          Length = 1087

 Score = 69.0 bits (168), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 29/196 (14%), Positives = 80/196 (40%), Gaps = 8/196 (4%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           L+        +      L+ D+   KQ+V+  G+    S + +     +     I  P +
Sbjct: 663 LKKAGANVIGTSPEDIDLAEDRDFFKQLVTKIGIKQAESGIAHNVEEALAIVDKIGYPVL 722

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P       G++++ K++ +   + ++++   G  +LI++++ D  EL    + D    
Sbjct: 723 VRPSFVLGGRGMVIVYKEKYLRKFVEEAAAIGEGKPILIDRFLEDATELDVDCISDGKHT 782

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           V    +   +       +S  +++ + P  +  +I  +V+  A    + +   G+   + 
Sbjct: 783 VIGAIMEHVEPAGI---HSGDSASVIPPMTLSKEIQDKVREFAKEFAKELHVVGL--MNM 837

Query: 249 LFDPLSRKVFWLEINV 264
                  +++ +E+N 
Sbjct: 838 QLAVKDGELYMIEVNP 853



 Score = 61.3 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 45/279 (16%), Positives = 101/279 (36%), Gaps = 36/279 (12%)

Query: 18  SGKACASALEDAGFKVSQID------------VDRS---------VGLVLAHLKPDLAFN 56
           SG      L   G++V  ++             DR+         +  ++   +PD    
Sbjct: 29  SGVQACKVLRREGYEVVLVNSNPATIMTDPEMADRTYIEPLSVDILHEIIRRERPDALLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            L G    +  +    + IL+  ++    +   +   + D+   K+ +   G+ +  S  
Sbjct: 89  TLGGQTALNLAMELNERGILDRYQVELIGAKAESIQRAEDRHLFKEAMLKIGLDLPRSGS 148

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
              ++  T  +  + S P +I+P       G  +   ++     + +    +  +++LIE
Sbjct: 149 AHSMSEATAIAHTIGSWPLIIRPGFTLGGTGGGIAHNEEEFETIVNRGLDASLNNEVLIE 208

Query: 170 QYVDG-IELTCGVMGDASL-DVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKE 226
           + + G  E    VM D     V   ++   D           +S  V P + +    Y+ 
Sbjct: 209 ESLLGWKEFEMEVMRDKKGNAVIVCSIENLDPMGVHT----GDSITVAPIQSLDDRAYQA 264

Query: 227 VQRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           ++  +    +AIG   G S   +  +P + +   +E+N 
Sbjct: 265 MRDDSLKVMEAIGVETGGSNVQWAIEPKTGRRIIIEMNP 303


>gi|54026162|ref|YP_120404.1| pyruvate carboxylase [Nocardia farcinica IFM 10152]
 gi|54017670|dbj|BAD59040.1| putative pyruvate carboxylase [Nocardia farcinica IFM 10152]
          Length = 1133

 Score = 69.0 bits (168), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 38/247 (15%), Positives = 83/247 (33%), Gaps = 18/247 (7%)

Query: 28  DAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87
           + G  V       ++         D  +   +G   E+  + A      I +        
Sbjct: 53  EQGHPVRAYLSIDAIIDAAKTAGADAVYPG-YGFLSENPDLAAACAREGITFIGPSAEVL 111

Query: 88  ALSMDKMRSKQVVSSCGVPVC----PSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIV 143
            L+ +K R+ +   + G+PV     PS  V++  + +   +  P  +K + GG   G+  
Sbjct: 112 ELAGNKARAIEAAKAAGLPVLRSSEPSADVDQL-LAASRELEYPIFVKAVAGGGGRGMRR 170

Query: 144 IKKDQSIPLDLLQS-----SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD 198
           +   + +   +  +     S++      L +  V+   +   ++ D   +V         
Sbjct: 171 VAAPEQLREAIEAASREAESAFGDPTVFLEQAVVNPRHIEVQILADQHGNVM-----HLF 225

Query: 199 FYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
                ++        + PA  +   + + +   A    + IG       +FL D     V
Sbjct: 226 ERDCSVQRRHQKVIELAPAPNLDPALRERICADAVAFARQIGYSNAGTVEFLLDERGNHV 285

Query: 258 FWLEINV 264
           F  E+N 
Sbjct: 286 FI-EMNP 291


>gi|18978086|ref|NP_579443.1| carbamoyl phosphate synthase large subunit [Pyrococcus furiosus DSM
           3638]
 gi|22095505|sp|Q8U085|CARB_PYRFU RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|18893879|gb|AAL81838.1| carbamoyl-phosphate synthase large chain (glutamine-hydrolysing)
           [Pyrococcus furiosus DSM 3638]
          Length = 1056

 Score = 69.0 bits (168), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 86/222 (38%), Gaps = 19/222 (8%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--QHLISPPYV 129
           LE   +    +   +   + ++ +  +++   G+P    I              I  P +
Sbjct: 636 LENAGVKLLGTSGKSVDKAENRAKFSKLLEKLGIPQPEWISAESIDEAIKLAKKIEYPVI 695

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM--GDASL 187
           ++P    S   + V   ++ +   L +++S +    +LI +++ G E     +  G   +
Sbjct: 696 VRPSYVLSGTAMKVAWNEKELIDFLKEAASVSPEHPVLISKFIPGTEAEIDAVSDGKKVV 755

Query: 188 DVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRS 246
            VT   +  +  +S        +ST V P + +     K +  + +   + +  +G    
Sbjct: 756 GVTLEHIEGAGVHS-------GDSTMVTPWRTLSERNVKRIWEITYELAKELEIKGPFNV 808

Query: 247 DFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
            F+ D    K + LE+N++   T  S+ P  +   G +  EL
Sbjct: 809 QFVIDK---KPYVLELNLR---TSRSM-PFSSKSRGVNLMEL 843



 Score = 67.5 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 50/302 (16%), Positives = 106/302 (35%), Gaps = 44/302 (14%)

Query: 18  SGKACASALEDAGFKVSQIDV---------------------DRSVGLVLAHLKPDLAFN 56
           SG     AL + G +   ++                         +  V+   KPD    
Sbjct: 27  SGSQALKALREEGIESVLVNPNVATIQTSYELADKVYLLPLKTEFIEKVIEKEKPDG--- 83

Query: 57  VLHGNFGEDGLV-------QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109
           +L G  G+  L        + IL+   +    + I     ++D+ + ++ +   G+PV P
Sbjct: 84  ILVGFGGQTALSLGVSLYKKGILDKYNVKVLGTPIEGIERALDREKFQKTMKKVGLPVPP 143

Query: 110 SILV--NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL 167
           S         ++    I  P +++        G  + +  +     ++++ + +   ++L
Sbjct: 144 SDAAKTPEEAIEIAESIGFPVIVRVSFNLGGRGSFIARSREEFEKYIIRAFAQSEIRKVL 203

Query: 168 IEQYVDG-IELTCGVMGDASL-DVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIY 224
           +E+Y++G  E+   V+ D +   V  + +   D            S  V P++ +    Y
Sbjct: 204 VEKYLNGWKEIEFEVVRDKAGNSVAVVCLENVDPMGVHT----GESIVVGPSQTLTNREY 259

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
           + ++  A     AI   G         P S + + +E    P M+  S     +   GY 
Sbjct: 260 QMLRDAAIRVADAIELIGEGNVQLALSPNSEEYYVIE--TNPRMSRSS--ALASKVTGYP 315

Query: 285 FR 286
             
Sbjct: 316 LA 317


>gi|30249750|ref|NP_841820.1| hypothetical protein NE1792 [Nitrosomonas europaea ATCC 19718]
 gi|30180787|emb|CAD85703.1| hypothetical protein NE1792 [Nitrosomonas europaea ATCC 19718]
          Length = 357

 Score = 69.0 bits (168), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 33/191 (17%), Positives = 71/191 (37%), Gaps = 25/191 (13%)

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ---HLISPPYVIKPLKG 135
           +  S  +      +K    Q  +   +P+ P+IL+             +  P ++KPL+ 
Sbjct: 102 FPCSDQVILDTLHNKWSFAQTCAKYRLPIPPTILLTSSDQLDTSTLDPVGFPLIVKPLEA 161

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM--GDASLDVTEIA 193
            SS G++ +   Q++   + Q S +     L+++ Y+ G ++   ++   D  L  T  +
Sbjct: 162 ESSHGVVRLDNLQALRTYIEQDSHYAQLP-LIVQSYIPGRDIDISILAANDRILCNTVQS 220

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
             +                      +    + E+  +A    QA    G++  D   D  
Sbjct: 221 WLEDGV-------------------LEFTQHPEMHAIATRLVQAFHYEGLAHFDMRIDAR 261

Query: 254 SRKVFWLEINV 264
             K++ +E N 
Sbjct: 262 DGKLYVIECNP 272


>gi|326329303|ref|ZP_08195628.1| methylcrotonyl-CoA carboxylase alpha chain [Nocardioidaceae
           bacterium Broad-1]
 gi|325952878|gb|EGD44893.1| methylcrotonyl-CoA carboxylase alpha chain [Nocardioidaceae
           bacterium Broad-1]
          Length = 628

 Score = 69.0 bits (168), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 35/197 (17%), Positives = 69/197 (35%), Gaps = 23/197 (11%)

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLK 134
             + +             K  ++++  + GVPV P                 P ++K   
Sbjct: 92  AGLTWVGPTPEVIEQMGRKDAAREIAVAAGVPVVP----------RGEDSPYPLLVKAAA 141

Query: 135 GGSSLGIIVIKKDQSIPLDLLQS-----SSWNHGDQLLIEQYVD-GIELTCGVMGDASLD 188
           GG   G+ +++  + +      +     S++   + LLIE+YV+ G  +   V GD   +
Sbjct: 142 GGGGKGMRIVRSPEELDEARGAAAREALSAFG-DETLLIEKYVERGRHIEVQVFGDTHGN 200

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           V              ++          PA  +  +    V   A    + +   G    +
Sbjct: 201 VI-----HLFERDCSVQRRHQKVIEEAPAPTLTDEQRNLVLTSAVALARQVDYTGAGTVE 255

Query: 248 FLFDPLSRKVFWLEINV 264
           FL D  S + ++LE+N 
Sbjct: 256 FLLDEASGEAYFLEMNT 272


>gi|312879097|ref|ZP_07738897.1| carbamoyl-phosphate synthase, large subunit [Aminomonas paucivorans
           DSM 12260]
 gi|310782388|gb|EFQ22786.1| carbamoyl-phosphate synthase, large subunit [Aminomonas paucivorans
           DSM 12260]
          Length = 1044

 Score = 69.0 bits (168), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 29/199 (14%), Positives = 72/199 (36%), Gaps = 10/199 (5%)

Query: 69  QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQHLISP 126
           Q + E   +    +   A   + D+    +++S  G+   P   V      + +   +  
Sbjct: 642 QGLQEE-GVSLLGTSFEAIQAAEDRDLFSRILSDLGLSQPPGRGVRNLEEGIAAAEALGF 700

Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186
           P +++P      L +  ++  +     L ++     G  +L++++++G E     + D S
Sbjct: 701 PLMVRPSFVLGGLAMRRVRDREGFEAVLEEAFRAAPGQSVLVDRFLEGREFEVDALCDGS 760

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISR 245
             +        D           +S  + P   +  +  + V++      +A+G  G+  
Sbjct: 761 EVLIPGIFEHLDPAGIHS----GDSMALFPQLSLRPEETRFVEQAVRSLSEALGLAGLLN 816

Query: 246 SDFLFDPLSRKVFWLEINV 264
             F       +++ LE N 
Sbjct: 817 VQF--VHSRGRLWILEANP 833



 Score = 60.1 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 49/289 (16%), Positives = 106/289 (36%), Gaps = 39/289 (13%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQ-------IDVDRSVGLV--LAHLKPDLAFNV 57
           G ++E + S   G     AL++ GF+V         I  DR +  +  L  L+ ++  ++
Sbjct: 20  GQAAEFDYS---GSQACRALKERGFRVILLNSNPATIQTDRELADLVYLRPLEAEVVESL 76

Query: 58  LHGNFGEDGLVQAI-----------------LELLEIPYTHSGILASALSMDKMRSKQVV 100
           L  +  E G++ ++                 LE   +    +   A   +  +   + ++
Sbjct: 77  LELHRPE-GILASLGGQTALNLLMELEERGSLERFGVRVWGTQPGAVRTAEAREPFRDLM 135

Query: 101 SSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS 158
           ++ G PV PS  V      + +   +  P V++P       G  V       P     + 
Sbjct: 136 AAIGQPVIPSRSVGSVEEALAAADELGLPLVLRPDFTLGGTGGGVCTDGSEYPEQAAAAL 195

Query: 159 SWNHGDQLLIEQYVDG-IELTCGVMGDASLDV-TEIAVPKSDFYSYELKYSSLNSTHVLP 216
           + +   ++L+E++++G  E+   ++ D   +      +   D           +S  V P
Sbjct: 196 AASPVRRVLVERFLEGWREVELEMLRDGEGNALCVCGMENLDPMGVHT----GDSVVVAP 251

Query: 217 A-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              +    ++ ++  A    +A+  RG     F   P       +E+N 
Sbjct: 252 VLTLKDRTWQRLRTAALRIVEALDIRGACNVQFALRPDEEAYGVIEVNP 300


>gi|255020831|ref|ZP_05292887.1| Carbamoyl-phosphate synthase large chain [Acidithiobacillus caldus
           ATCC 51756]
 gi|254969622|gb|EET27128.1| Carbamoyl-phosphate synthase large chain [Acidithiobacillus caldus
           ATCC 51756]
          Length = 1076

 Score = 69.0 bits (168), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 49/278 (17%), Positives = 99/278 (35%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G +V  +         D D            ++V  ++   +PD    
Sbjct: 29  SGVQACKALREEGCRVILVNSNPATIMTDPDTADAVYIEPVEWQTVAKIIERERPDALLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +    + ILE   +    + I A   + D+ R K+ +   G+ V  S  
Sbjct: 89  TMGGQTALNCALDLHREGILERFGVELIGASIEAIQEAEDRGRFKRAMEEIGLEVARSAF 148

Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +           +  P +I+P       G  +    +       +    +   ++LIE+
Sbjct: 149 AHTLDEARAIAEDVGFPVIIRPSYTLGGSGGGIAYNREEFEDIAARGLEASPSHEILIEE 208

Query: 171 YVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            V G  E    V+ D + + +   ++   D           +S  V PA+ +    Y+ +
Sbjct: 209 SVIGWKEFEMEVVRDRADNCIIVCSIENLDPMGIHT----GDSITVAPAQTLTDREYQVM 264

Query: 228 QRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RDASLAVLRRIGVDTGGSNVQFALNPRNGRMLVIEMNP 302



 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 31/196 (15%), Positives = 81/196 (41%), Gaps = 8/196 (4%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ--HLISPPYV 129
           LE   +P   +   +  L+ D+ R +Q+++  G+    + +        Q    +  P V
Sbjct: 652 LESAGVPIIGTSPDSIDLAEDRERFQQLITRLGLRQPENAIARSADEALQLARQLGYPLV 711

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  ++ +   ++++   +    +L+++++ D +E+    + D    
Sbjct: 712 VRPSYVLGGRAMRIVYSEEDLARYMVEAVRVSEDQPILLDRFLNDALEVDVDAVADGKQV 771

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           V    +   +       +S  ++  + P  +   I  E++R A    QA+G  G+    F
Sbjct: 772 VVAGIMEHIEQAGV---HSGDSACCLPPYSLAQPIQDELRRQAECLGQALGVIGLMNCQF 828

Query: 249 LFDPLSRKVFWLEINV 264
                  +++ LE+N 
Sbjct: 829 AV--QEDRIYVLEVNP 842


>gi|150400482|ref|YP_001324248.1| carbamoyl-phosphate synthase L chain ATP-binding [Methanococcus
           aeolicus Nankai-3]
 gi|150013185|gb|ABR55636.1| Carbamoyl-phosphate synthase L chain ATP-binding [Methanococcus
           aeolicus Nankai-3]
          Length = 479

 Score = 69.0 bits (168), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 45/277 (16%), Positives = 96/277 (34%), Gaps = 34/277 (12%)

Query: 18  SGKACASALEDAGF-------KVSQIDVDRSVGL--------------VLAHLKPDLAFN 56
           SG     +L + G          + I  D+ +                ++   +PD    
Sbjct: 28  SGSQACKSLREEGIYTILVNSNPATIQTDKDIADKVYLEPLNPKIVEKIIEKERPDAILP 87

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G  G +  V      ILE   +    S +     S D+    + +   G PV  S  
Sbjct: 88  TMGGQTGLNLAVDLHRMGILEKYGVKLLGSTVDVIETSEDRELFNKAMDEIGEPVTKSYA 147

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           V      +++   +  P +++P       G  +   ++ +   + +  +++  +Q+LI++
Sbjct: 148 VESIEKALEAVEELGYPVIVRPAFTLGGTGGGIPYTEEELRDIVEKGLNYSMINQVLIDE 207

Query: 171 YVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            V G  E    VM DA  + +    +   D            S  V P++ +   +++ +
Sbjct: 208 SVLGWKEYEYEVMRDAKDNCIIVCNMENIDPMGIHT----GESIVVAPSQTLSDKMHQRL 263

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +  A    + +   G     F   P   +   +E+N 
Sbjct: 264 RNAALKIIRHLNIIGGCNVQFSVSPDDSEYRVIEVNP 300


>gi|311747297|ref|ZP_07721082.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Algoriphagus
           sp. PR1]
 gi|126579011|gb|EAZ83175.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Algoriphagus
           sp. PR1]
          Length = 497

 Score = 69.0 bits (168), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 79/220 (35%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      +    + +      A  +   K+ +KQ VS   +P+ P    
Sbjct: 79  AIHPGYGFLSENAAFAKKVTDSGLIFVGPSPEAIEVMGSKLAAKQAVSKYDIPLVPGTEE 138

Query: 114 NRFTMDSQHLI----SPPYVIKPLKGGSSLGIIVIKKDQSIPL----DLLQSSSWNHGDQ 165
               +     I      P +IK   GG   G+ +++ ++         + ++ S      
Sbjct: 139 AISDIPEAKKIAKEIGYPILIKASAGGGGKGMRIVENEKEFEEQMERAISEAVSAFGDGA 198

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+Y+     +   ++GD   ++  +   +        K      + V+ A++     
Sbjct: 199 VFIEKYITSPRHIEIQILGDQQGNIVYLFERECSIQRRHQKVIEEAPSSVVTAEM----R 254

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K +   A    +A    G    +F+ D      ++LE+N 
Sbjct: 255 KAMGEAAVGVAKACNYYGAGTVEFIVDEKLN-FYFLEMNT 293


>gi|90961635|ref|YP_535551.1| pyruvate carboxylase [Lactobacillus salivarius UCC118]
 gi|227890723|ref|ZP_04008528.1| pyruvate carboxylase [Lactobacillus salivarius ATCC 11741]
 gi|90820829|gb|ABD99468.1| Pyruvate carboxylase [Lactobacillus salivarius UCC118]
 gi|227867661|gb|EEJ75082.1| pyruvate carboxylase [Lactobacillus salivarius ATCC 11741]
          Length = 1141

 Score = 69.0 bits (168), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 32/221 (14%), Positives = 78/221 (35%), Gaps = 20/221 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+       E   I +    +    +  DK+ ++ V +S G+   P    
Sbjct: 77  AIHPGYGFLAENEEFAQKCEENGITFIGPSVEHLRIFGDKVEARNVANSAGLHTIPGTND 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
            +   +           P +IK   GG   G+ ++K+ + +     ++ S  +     D+
Sbjct: 137 PVKSLKDVEKFADKHGYPIMIKAAMGGGGRGMRIVKRKEELREAYERARSEANQSFGDDE 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDI 223
           L +E+ + +   +   ++ D   +V              ++  +       P   +  + 
Sbjct: 197 LYVEKMIVNPKHIEVQILADKHGNVM-----HLFERDCSVQRRNQKVIEFAPSITLSQER 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            KE+   A    +++        +FL        +++E+N 
Sbjct: 252 RKEICEAAVNLAKSVNYYNAGTVEFLVTEDD--FYFVEVNP 290


>gi|145225362|ref|YP_001136040.1| carbamoyl-phosphate synthase L chain, ATP-binding [Mycobacterium
           gilvum PYR-GCK]
 gi|145217848|gb|ABP47252.1| biotin carboxylase / biotin carboxyl carrier protein [Mycobacterium
           gilvum PYR-GCK]
          Length = 599

 Score = 69.0 bits (168), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 39/223 (17%), Positives = 76/223 (34%), Gaps = 21/223 (9%)

Query: 56  NVLHGNFG---EDGLV-QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           N +H  +G   E+    QA+L+   + +      +     DK+ ++ + +    P+ P  
Sbjct: 83  NAIHPGYGFLSENADFAQAVLD-AGLIWIGPSPQSIRDLGDKVTARHIAARANAPLVPGT 141

Query: 112 LVNRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL----DLLQSSSWNHG 163
                  D           P  IK   GG   G+ V +  + IP        ++ +    
Sbjct: 142 PDPVKDADEVVAFAKEYGVPVAIKAAFGGGGRGMKVARTIEEIPELFDSATREAVAAFGR 201

Query: 164 DQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPL 221
            +  +E+Y+D    +   V+ D   +V       +      L+          PA  +  
Sbjct: 202 GECFVERYLDKPRHVEAQVIADTHGNVVV-----AGTRDCSLQRRFQKLVEEAPAPFLTD 256

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              KE+   A    +  G  G    ++L       + +LE+N 
Sbjct: 257 AQRKEIHESAKRICKEAGYYGAGTVEYLV-GQDGLISFLEVNT 298


>gi|305666536|ref|YP_003862823.1| acetyl-CoA carboxylase, biotin carboxylase [Maribacter sp.
           HTCC2170]
 gi|88708803|gb|EAR01038.1| acetyl-CoA carboxylase, biotin carboxylase [Maribacter sp.
           HTCC2170]
          Length = 480

 Score = 69.0 bits (168), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 40/219 (18%), Positives = 84/219 (38%), Gaps = 17/219 (7%)

Query: 58  LHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI--- 111
           +H  +G   E+       E  +I +      A  +  DK+ +K  V    +P+ P +   
Sbjct: 77  IHPGYGFLSENADFAEEAEKNDIIFIGPRSKAIKMMGDKLAAKDAVKDYEIPMVPGVDRA 136

Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK----KDQSIPLDLLQSSSWNHGDQL 166
               +  ++    I  P +IK   GG   G+ V++     ++ +   + +++S      +
Sbjct: 137 VTDPKEAVEIAKQIGFPILIKAAAGGGGKGMRVVEQEKDVEEQMKRAISEATSAFGDGSV 196

Query: 167 LIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
            +E+YV     +   VM D+  +V      +        K           A +  ++ +
Sbjct: 197 FVEKYVTSPRHVEIQVMADSHGNVLHFFERECSVQRRHQK----VVEEAPSAVLTPELRE 252

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           E+ + A    ++    G    +FL D    K ++LE+N 
Sbjct: 253 EMGQAAINVAKSCDYLGAGTVEFLLDA-DHKFYFLEMNT 290


>gi|325127537|gb|EGC50462.1| carbamoyl-phosphate synthase, large subunit [Neisseria meningitidis
           N1568]
          Length = 1071

 Score = 69.0 bits (168), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 28/192 (14%), Positives = 72/192 (37%), Gaps = 8/192 (4%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYVIKPL 133
            +    +   +   + D+ R ++V++  G+   P+ + +           I  P V++P 
Sbjct: 652 GVNIIGTSADSIDAAEDRERFQKVLNDLGLRQPPNRIAHNEEEALVKAEEIGYPLVVRPS 711

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEI 192
                  + ++   + +   + ++   +    +L++ ++ + IE+    + D    V   
Sbjct: 712 YVLGGRAMQIVHSAEELQKYMREAVQVSEDSPVLLDFFLNNAIEVDVDCVSDGKDVVIGG 771

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            +   +       +S  +   + P  +  +I  E++R       A+G  G+    F    
Sbjct: 772 IMQHVEQAGI---HSGDSGCSLPPYSLSEEIQDEIRRQTKAMAYALGVVGLMNVQFAV-- 826

Query: 253 LSRKVFWLEINV 264
               VF LE+N 
Sbjct: 827 QDGVVFVLEVNP 838



 Score = 65.5 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 50/278 (17%), Positives = 101/278 (36%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +              DV        ++V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYKVILVNSNPATIMTDPEMADVTYIEPIMWQTVEKIIAKERPDAILP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      +L    +    +   A   + D+ R K+ +   G+    S +
Sbjct: 89  TMGGQTALNCALDLARNGVLAKYNVELIGATEDAIDKAEDRGRFKEAMEKIGLSCPKSFV 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     + +Q  +  P +I+P       G  +            +    +   +LLIEQ
Sbjct: 149 CHTMNEALAAQEQVGFPTLIRPSFTMGGSGGGIAYNKDEFLAICERGFDASPTHELLIEQ 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            V G  E    V+ D + +   I   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SVLGWKEYEMEVVRDKNDNCIIICSIEN----FDPMGVHTGDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RNSSLAVLREIGVDTGGSNVQFAVNPENGEMIVIEMNP 302


>gi|300214444|gb|ADJ78860.1| Pyruvate carboxylase [Lactobacillus salivarius CECT 5713]
          Length = 1141

 Score = 69.0 bits (168), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 32/221 (14%), Positives = 78/221 (35%), Gaps = 20/221 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+       E   I +    +    +  DK+ ++ V +S G+   P    
Sbjct: 77  AIHPGYGFLAENEEFAQKCEENGITFIGPSVEHLRIFGDKVEARNVANSAGLHTIPGTND 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
            +   +           P +IK   GG   G+ ++K+ + +     ++ S  +     D+
Sbjct: 137 PVKSLKDVEKFADKHGYPIMIKAAMGGGGRGMRIVKRKEELREAYERARSEANQSFGDDE 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDI 223
           L +E+ + +   +   ++ D   +V              ++  +       P   +  + 
Sbjct: 197 LYVEKMIVNPKHIEVQILADKHGNVM-----HLFERDCSVQRRNQKVIEFAPSITLSQER 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            KE+   A    +++        +FL        +++E+N 
Sbjct: 252 RKEICEAAVNLAKSVNYYNAGTVEFLVTEDD--FYFVEVNP 290


>gi|294788331|ref|ZP_06753574.1| carbamoyl-phosphate synthase, large subunit [Simonsiella muelleri
           ATCC 29453]
 gi|294483762|gb|EFG31446.1| carbamoyl-phosphate synthase, large subunit [Simonsiella muelleri
           ATCC 29453]
          Length = 1074

 Score = 69.0 bits (168), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 50/278 (17%), Positives = 100/278 (35%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +              DV        ++V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYKVILVNSNPATIMTDPEMADVTYIEPIMWQTVEKIIAKERPDAILP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      +L    +    +   A   + D+ R K  ++  G+    S +
Sbjct: 89  TMGGQTALNCALDLARNGVLRKYNVELIGASEDAIDKAEDRGRFKDAMAKIGLNTPKSFI 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     + +Q  +  P +I+P       G  +            +    +   +LLIEQ
Sbjct: 149 CHTMNEALRAQEEVGFPTLIRPSFTMGGSGGGIAYNKDEFLAICERGFDASPTHELLIEQ 208

Query: 171 YVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            V G  E    V+ D + + +   ++   D           +S  V PA+ +    Y+ +
Sbjct: 209 SVLGWKEYEMEVVRDKNDNCIIVCSIENFDPMGVHT----GDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RNASLAVLREIGVDTGGSNVQFAVNPANGEMIVIEMNP 302



 Score = 65.1 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 34/224 (15%), Positives = 81/224 (36%), Gaps = 17/224 (7%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--QHLISPPYVIKPL 133
            +    +   +   + D+ R ++V++  G+   P+               I  P V++P 
Sbjct: 652 GVNIIGTSADSIDAAEDRERFQKVLNDLGLRQPPNRTARAEDEALRLAEEIGYPLVVRPS 711

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEI 192
                  + V+   + +   + ++   +    +L++ ++ + IE+    + D    V   
Sbjct: 712 YVLGGRAMQVVHSPEQLQTYMREAVQVSEDSPVLLDFFLNNAIEVDVDCVSDGEEVVIGG 771

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            +   +       +S  +   + P  + ++   E++R       A+  +G+    F    
Sbjct: 772 IMQHVEQAGI---HSGDSGCSLPPYSLSIETQDEIRRQTKAMAFALNVKGLMNVQFAV-- 826

Query: 253 LSRKVFWLEIN-----VQPGMTPVSIFPEM---AAY-AGYSFRE 287
               VF LE+N       P ++  +  P     A   AG S +E
Sbjct: 827 QDGVVFVLEVNPRASRTVPFVSKATSVPLAKIGARAMAGISLKE 870


>gi|319795982|ref|YP_004157622.1| carbamoyL-phosphate synthase l chain ATP-binding protein
           [Variovorax paradoxus EPS]
 gi|315598445|gb|ADU39511.1| Carbamoyl-phosphate synthase L chain ATP-binding protein
           [Variovorax paradoxus EPS]
          Length = 666

 Score = 68.6 bits (167), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 41/224 (18%), Positives = 72/224 (32%), Gaps = 21/224 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+           + +      A      K  SKQ++   GVP+ P    
Sbjct: 77  AVHPGYGFLSENEEFAQACADAGLVFIGPPPSAIKAMGLKAESKQLMEKAGVPLVPGYHG 136

Query: 114 NRFT----MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
           +             I  P +IK   GG   G+  + K       L             D 
Sbjct: 137 HDQDPALLQREADRIGYPVLIKASAGGGGKGMRAVDKAADFEAALASCKREAINSFGDDA 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           +LIE+YV     +   V GD   +   +           ++          PA  +   +
Sbjct: 197 VLIEKYVQRPRHIEIQVFGDTHGNYVYL-----FERDCSVQRRHQKVLEEAPAPGMTEAM 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR---KVFWLEINV 264
            K++   A  A +A+   G    +F+ +         F++E+N 
Sbjct: 252 RKQMGDSAVAAARAVNYVGAGTVEFIVEQREGGEMNFFFMEMNT 295


>gi|315185545|gb|EFU19314.1| carbamoyl-phosphate synthase large subunit [Spirochaeta thermophila
           DSM 6578]
          Length = 1071

 Score = 68.6 bits (167), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 54/279 (19%), Positives = 105/279 (37%), Gaps = 37/279 (13%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL++ G++V  ++ + +                     +  ++   +PD    
Sbjct: 29  SGTQAVKALKEEGYRVILVNPNPATIMTTPGLADVVYMEPLEVPYLEEIIRKERPDALLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G  G +  V+     +L+   +    + + A   + D+ + K+VV+S G+ V  S +
Sbjct: 89  TMGGQTGLNLSVELYEAGVLDRYGVELIGANVEAIRKAEDRGKFKEVVTSIGLDVPRSAM 148

Query: 113 VNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           V            I  P VI+P       G  +    +   L L ++   +   + LIE+
Sbjct: 149 VKSLQEGRKVMEEIGLPLVIRPSFTLGGKGGSIASTPEDFELLLERALLESPVHEALIEE 208

Query: 171 YVDG-IELTCGVMGDA-SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            + G  E    VM D     V   ++   D           +S  V P + +    Y+++
Sbjct: 209 SLLGWKEFELEVMRDHMDNAVIVCSIENIDPMGVHT----GDSVTVAPIQTLSDWEYQKM 264

Query: 228 QRLAFLAHQAIG--CRGISRSDFLFDPLSRKVFWLEINV 264
           +       +AIG  C G S   F   P + ++  +E+N 
Sbjct: 265 RTAGIEVLRAIGVDCGG-SNVQFAVRPDTGRMVVIEMNP 302



 Score = 48.6 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/208 (11%), Positives = 67/208 (32%), Gaps = 12/208 (5%)

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYVIKPLKGGS 137
             + +     + D+     +V   G+    +               I  P +++P     
Sbjct: 656 VGTPVRGIKEAEDRGFFADLVRRVGLNQPANRAARTLEEVRAFAEEIGYPVLLRPSFVLG 715

Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPK 196
              + +      +   L +    +    +L++Q++ D  E     + D         +  
Sbjct: 716 GKSMFIAFSPDELEEFLRRGVEISPERPVLVDQFLEDAFEYDVDAVSDGENVYIGGIMQH 775

Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256
            +       +S  ++    P K   ++  +++       +A+G  G    +  +      
Sbjct: 776 IEAAGI---HSGDSACVFPPYKSNPEVLTQMKDATVKIARALGVEGF--LNIQYAVKDDV 830

Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYS 284
           ++ LE+N +   T     P ++  +G +
Sbjct: 831 LYVLEVNPRASRT----VPYLSKASGVN 854


>gi|269928849|ref|YP_003321170.1| lysine biosynthesis enzyme LysX [Sphaerobacter thermophilus DSM
           20745]
 gi|269788206|gb|ACZ40348.1| lysine biosynthesis enzyme LysX [Sphaerobacter thermophilus DSM
           20745]
          Length = 302

 Score = 68.6 bits (167), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 53/275 (19%), Positives = 100/275 (36%), Gaps = 39/275 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AV+ G + +E        +   +     G +V++ID DR   + L     D    +   
Sbjct: 14  VAVVHGPLRAEE-------RLLFAEFARRGIEVARID-DRRAVVDLTGQPWDYDVVI--- 62

Query: 61  NFGEDGLVQ------AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV- 113
             G     Q      AI E   IP T +     AL  DK+R+   ++  G+P    ++  
Sbjct: 63  --GRSVSQQRTLHTLAIAEGWGIP-TLNRSEVVALCNDKLRTSAAIACAGLPQPRLLVAY 119

Query: 114 -NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS---SWNHGDQLLIE 169
                +++   +  P V+KP  G     +  +    +    L       +++HG   + E
Sbjct: 120 TPEAALEAIESLGYPVVLKPPVGSWGRLLARVNNRAAAEALLEHKESLGAFHHGTFYIQE 179

Query: 170 Q-YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
                G ++   V+GD ++        +S  +       +  S  V        +  E+ 
Sbjct: 180 YVRKPGRDIRAFVVGDETICAIYR---RSGHWITNTARGAEASNCV--------VTPEIA 228

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            L     +A+G   ++  D   DP  R +   E+N
Sbjct: 229 ELCSAVARAVGGGVLA-IDLFEDP-DRGLLVNEVN 261


>gi|293381990|ref|ZP_06627951.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Lactobacillus
           crispatus 214-1]
 gi|312977043|ref|ZP_07788792.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Lactobacillus
           crispatus CTV-05]
 gi|290921446|gb|EFD98487.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Lactobacillus
           crispatus 214-1]
 gi|310896371|gb|EFQ45436.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Lactobacillus
           crispatus CTV-05]
          Length = 460

 Score = 68.6 bits (167), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 74/221 (33%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---S 110
            +H  +G   E+     + E   + +            +K  ++Q++ +  VPV P    
Sbjct: 77  AIHPGYGFLSENAEFAQMCEDCGLTFIGPKAETIDQMGNKEHARQLMMAHNVPVTPGSNG 136

Query: 111 ILVNRFTMDS-QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
           ++ N          I  P +IK   GG   GI  +     +   L  + S        D+
Sbjct: 137 VIKNAEEAKKIAAQIGYPVLIKATAGGGGKGIRQVTDPSQMAEALAAAQSEAKNDFGDDR 196

Query: 166 LLIEQYVDGI-ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDI 223
           + +E+ +  +  +   +  D                   L+ +        P  +   + 
Sbjct: 197 MYLEKVMQNVKHIEVQIFRDMYGHTVYFPE-----RDCSLQRNKQKVLEESPCDLITENE 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            KE+  +A  A +A         +FL D      +++E+N 
Sbjct: 252 RKELGEVAVKAARAANYVNTGTIEFLMD-QDHHFYFMEMNT 291


>gi|254671009|emb|CBA07784.1| carbamoyl-phosphate synthase large chain [Neisseria meningitidis
           alpha153]
          Length = 1071

 Score = 68.6 bits (167), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 28/192 (14%), Positives = 72/192 (37%), Gaps = 8/192 (4%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYVIKPL 133
            +    +   +   + D+ R ++V++  G+   P+ + +           I  P V++P 
Sbjct: 652 GVNIIGTSADSIDAAEDRERFQKVLNDLGLRQPPNRIAHNEEEALVKAEEIGYPLVVRPS 711

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEI 192
                  + ++   + +   + ++   +    +L++ ++ + IE+    + D    V   
Sbjct: 712 YVLGGRAMQIVHSAEELQKYMREAVQVSEDSPVLLDFFLNNAIEVDVDCVSDGKDVVIGG 771

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            +   +       +S  +   + P  +  +I  E++R       A+G  G+    F    
Sbjct: 772 IMQHVEQAGI---HSGDSGCSLPPYSLSEEIQDEIRRQTKAMAYALGVVGLMNVQFAV-- 826

Query: 253 LSRKVFWLEINV 264
               VF LE+N 
Sbjct: 827 QDGVVFVLEVNP 838



 Score = 66.3 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 50/278 (17%), Positives = 101/278 (36%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +              DV        ++V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYKVILVNSNPATIMTDPEMADVTYIEPIMWQTVEKIIAKERPDAILP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      +L    +    +   A   + D+ R K+ +   G+    S +
Sbjct: 89  TMGGQTALNCALDLARNGVLAKYNVELIGATEDAIDKAEDRGRFKEAMEKIGLSCPKSFV 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     + +Q  +  P +I+P       G  +            +    +   +LLIEQ
Sbjct: 149 CHTMNEALAAQEQVGFPTLIRPSFTMGGSGGGIAYNKDEFLAICERGFDASPTHELLIEQ 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            V G  E    V+ D + +   I   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SVLGWKEYEMEVVRDKNDNCIIICSIEN----FDPMGVHTGDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RNASLAVLREIGVDTGGSNVQFAVNPENGEMIVIEMNP 302


>gi|226946949|ref|YP_002802022.1| acetyl-CoA carboxylase, biotin carboxylase [Azotobacter vinelandii
           DJ]
 gi|226721876|gb|ACO81047.1| acetyl-CoA carboxylase, biotin carboxylase [Azotobacter vinelandii
           DJ]
          Length = 658

 Score = 68.6 bits (167), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 82/220 (37%), Gaps = 19/220 (8%)

Query: 58  LHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
           +H  +G   E+       E   + +      A      K  +K ++ + GVP+ P     
Sbjct: 80  IHPGYGFLSENAGFARACEAAGLIFLGPPATAIEAMGSKSAAKALMEAAGVPLVPGYHGA 139

Query: 115 RFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQL 166
               +    +   I  P ++K + GG   G+ V++++  +   L     ++ +     ++
Sbjct: 140 AQDFETFRAAAEAIGYPVLLKAVAGGGGKGMKVVEREAGLAEALDSARREAQAAFGDARM 199

Query: 167 LIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIY 224
           L+E+Y++    +   V  D   +   +            K          PA  +   + 
Sbjct: 200 LVEKYLEKPRHVEIQVFADRHGNCLYLNERDCSIQRRHQK-----VVEEAPAPGLSPALR 254

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +   A  A QAIG  G    +FL D    + F++E+N 
Sbjct: 255 RAMGEAAVRAAQAIGYVGAGTVEFLLDAR-GEFFFMEMNT 293


>gi|70734326|ref|YP_257966.1| carbamoyl phosphate synthase large subunit [Pseudomonas fluorescens
           Pf-5]
 gi|68348625|gb|AAY96231.1| carbamoyl-phosphate synthase, large subunit [Pseudomonas
           fluorescens Pf-5]
          Length = 1073

 Score = 68.6 bits (167), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 29/196 (14%), Positives = 76/196 (38%), Gaps = 8/196 (4%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYV 129
           LE   +P   +   A   + D+ R +Q+V    +   P+  V        +   I  P V
Sbjct: 653 LEAAGVPIIGTSPDAIDRAEDRERFQQMVERLNLRQPPNATVRSEDEAIRAAAKIGYPLV 712

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLD 188
           ++P        + ++ ++  +   L ++   ++   +L++ +++  IE+    + D +  
Sbjct: 713 VRPSYVLGGRAMEIVYEEDELKRYLREAVQVSNDSPVLLDHFLNCAIEMDVDAVCDGTDV 772

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           V    +   +       +S  ++  + P  +P  I  E++         +G  G+   + 
Sbjct: 773 VIGAIMQHIEQAGV---HSGDSACSLPPYSLPAHIQDEMREQVKKMALELGVVGL--MNV 827

Query: 249 LFDPLSRKVFWLEINV 264
                  +++ +E+N 
Sbjct: 828 QLALQGDQIYVIEVNP 843



 Score = 62.4 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 95/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +              D         ++V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPAMADATYIEPIKWQTVAKIIEKERPDALLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +    + +LE   +    +       + D+ R    + S G+    S +
Sbjct: 89  TMGGQTALNCALDLEREGVLEKFGVEMIGANADTIDKAEDRSRFDAAMKSIGLACPRSGI 148

Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     +     +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHSMEEANAVLDKLGFPCIIRPSFTMGGTGGGIAYNREEFEEICARGLDLSPTKELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D   + +   ++   D           +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKKDNCIIVCSIENFDPMGVHT----GDSITVAPAQTLTDKEYQIL 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F   P + ++  +E+N 
Sbjct: 265 RNASLAVLREIGVETGGSNVQFGICPNTGRMVVIEMNP 302


>gi|332160251|ref|YP_004296828.1| carbamoyl phosphate synthase large subunit [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|318607179|emb|CBY28677.1| carbamoyl-phosphate synthase large chain [Yersinia enterocolitica
           subsp. palearctica Y11]
 gi|325664481|gb|ADZ41125.1| carbamoyl phosphate synthase large subunit [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
          Length = 1077

 Score = 68.6 bits (167), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 42/278 (15%), Positives = 96/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D +              V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +    Q +L    +    +   A   + D+ R    +   G+    S +
Sbjct: 89  TMGGQTALNCALELERQGVLAEFGVTMIGATADAIDKAEDRRRFDIAMKKIGLDTARSGI 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     +     +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHNMEEALAVAADVGFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTKELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + +   +   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIEN----FDAMGIHTGDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RNASMAVLREIGVETGGSNVQFSVNPKNGRLIVIEMNP 302



 Score = 60.9 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 33/221 (14%), Positives = 85/221 (38%), Gaps = 14/221 (6%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           LE   +P   +   A   + D+ R +Q V+  G+    +  V      ++    +  P V
Sbjct: 654 LEAAGVPIIGTSPDAIDRAEDRERFQQAVNRLGLKQPANATVATIEQAVEKAAGLGYPLV 713

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  +  +      + S ++   +L+++++ D +E+    + D    
Sbjct: 714 VRPSYVLGGRAMEIVYDEVDLRRYFQNAVSVSNDAPVLLDRFLDDAVEVDVDAICDGERV 773

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           +    +   +    +    S +S   LPA  +  +I   +++        +  RG+    
Sbjct: 774 LIGGIMEHIE----QAGVHSGDSACSLPAYTLSKEIQDVMRQQVEKLAFELCVRGLMNVQ 829

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           F     + +V+ +E+N +   T     P ++   G    ++
Sbjct: 830 FAV--KNNEVYLIEVNPRAART----VPFVSKATGMPLAKV 864


>gi|269956888|ref|YP_003326677.1| carbamoyl-phosphate synthase L chain ATP- binding protein
           [Xylanimonas cellulosilytica DSM 15894]
 gi|269305569|gb|ACZ31119.1| Carbamoyl-phosphate synthase L chain ATP- binding protein
           [Xylanimonas cellulosilytica DSM 15894]
          Length = 792

 Score = 68.6 bits (167), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 87/221 (39%), Gaps = 19/221 (8%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL------ 112
           +G   E   +    E   + +         L  DK+ +K++V++ GVPV P  L      
Sbjct: 99  YGFLSESPALARACERAGLTFVGPPAEVLELMGDKLAAKRLVAAHGVPVLPGTLDGASLA 158

Query: 113 ---VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
                     +   +  P ++KP  GG   G++V++  +++P  L      +++    D 
Sbjct: 159 AGTPAETLAATARDVGFPLLVKPAAGGGGKGMVVVRSPEALPAALDSARRVAAASFGDDT 218

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           LLIE+ VD    +   V+ DA   V  +   +    + + +Y  +      PA +     
Sbjct: 219 LLIERLVDRPRHIEVQVLADAHGAVVHLGERE---CTLQRRYQKVVEEAPSPA-LDDAAR 274

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLS-RKVFWLEINV 264
             +   A    +A+G  G    +FL         +++E+N 
Sbjct: 275 ARLGAAACAVARAVGYVGAGTVEFLVPADDPSSFWFIEMNT 315


>gi|319761498|ref|YP_004125435.1| cyanophycin synthetase [Alicycliphilus denitrificans BC]
 gi|330823367|ref|YP_004386670.1| cyanophycin synthetase [Alicycliphilus denitrificans K601]
 gi|317116059|gb|ADU98547.1| cyanophycin synthetase [Alicycliphilus denitrificans BC]
 gi|329308739|gb|AEB83154.1| cyanophycin synthetase [Alicycliphilus denitrificans K601]
          Length = 726

 Score = 68.6 bits (167), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 25/105 (23%), Positives = 51/105 (48%), Gaps = 5/105 (4%)

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIV-IK 145
           ++ DK  +K+++++CGVPV    +V       +    I  P  +KP  G  + G+ + + 
Sbjct: 217 IAQDKDFTKRLLAACGVPVPEGRIVKNAEEAWEVAQEIGFPVTVKPSDGNHARGVTLELS 276

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190
           ++  I      +     G  +++E+++DGIE    V+G   +  T
Sbjct: 277 READIKAAFALAEP--EGSDVIVEKFIDGIEHRLLVVGGKVVAAT 319


>gi|238752267|ref|ZP_04613747.1| Carbamoyl-phosphate synthase large chain [Yersinia rohdei ATCC
           43380]
 gi|238709535|gb|EEQ01773.1| Carbamoyl-phosphate synthase large chain [Yersinia rohdei ATCC
           43380]
          Length = 1077

 Score = 68.6 bits (167), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 49/319 (15%), Positives = 108/319 (33%), Gaps = 52/319 (16%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D +              V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +    Q +L    +    +   A   + D+ R    +   G+    S +
Sbjct: 89  TMGGQTALNCALELERQGVLAEFGVTMIGATADAIDKAEDRRRFDIAMKKIGLDTARSGI 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     +     +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHNMEEALAVAADVGFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTKELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + +   +   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIEN----FDAMGIHTGDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV-----------QPGMTPVSIFP 275
           +  +    + IG   G S   F  +P + ++  +E+N              G        
Sbjct: 265 RNASMAVLREIGVETGGSNVQFSVNPKNGRLIVIEMNPRVSRSSALASKATGF----PIA 320

Query: 276 EMAA--YAGYSFRELLLWM 292
           ++AA    GY+  EL+  +
Sbjct: 321 KIAAKLAVGYTLDELMNDI 339



 Score = 61.3 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 34/221 (15%), Positives = 85/221 (38%), Gaps = 14/221 (6%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           LE   +P   +   A   + D+ R +Q V+  G+    +  V      +D    +  P V
Sbjct: 654 LEAAGVPIIGTSPDAIDRAEDRERFQQAVNRLGLKQPANATVATIEQAVDKAAGLGYPLV 713

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  +  +      + S ++   +L+++++ D +E+    + D    
Sbjct: 714 VRPSYVLGGRAMEIVYDEIDLRRYFQNAVSVSNDAPVLLDRFLDDAVEVDVDAICDGERV 773

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           +    +   +    +    S +S   LPA  +  +I   +++        +  RG+    
Sbjct: 774 LIGGIMEHIE----QAGVHSGDSACSLPAYTLSKEIQDVMRQQVEKLAFELCVRGLMNVQ 829

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           F     + +V+ +E+N +   T     P ++   G    ++
Sbjct: 830 FAV--KNNEVYLIEVNPRAART----VPFVSKATGMPLAKI 864


>gi|238764646|ref|ZP_04625591.1| Carbamoyl-phosphate synthase large chain [Yersinia kristensenii
           ATCC 33638]
 gi|238697138|gb|EEP89910.1| Carbamoyl-phosphate synthase large chain [Yersinia kristensenii
           ATCC 33638]
          Length = 1077

 Score = 68.6 bits (167), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 49/319 (15%), Positives = 108/319 (33%), Gaps = 52/319 (16%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D +              V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +    Q +L    +    +   A   + D+ R    +   G+    S +
Sbjct: 89  TMGGQTALNCALELERQGVLAEFGVTMIGATADAIDKAEDRRRFDIAMKKIGLDTARSGI 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     +     +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHNMEEALAVAADVGFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTKELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + +   +   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIEN----FDAMGIHTGDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV-----------QPGMTPVSIFP 275
           +  +    + IG   G S   F  +P + ++  +E+N              G        
Sbjct: 265 RNASMAVLREIGVETGGSNVQFSVNPKNGRLIVIEMNPRVSRSSALASKATGF----PIA 320

Query: 276 EMAA--YAGYSFRELLLWM 292
           ++AA    GY+  EL+  +
Sbjct: 321 KIAAKLAVGYTLDELMNDI 339



 Score = 60.9 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 33/221 (14%), Positives = 85/221 (38%), Gaps = 14/221 (6%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           LE   +P   +   A   + D+ R +Q V+  G+    +  V      ++    +  P V
Sbjct: 654 LEAAGVPIIGTSPDAIDRAEDRERFQQAVNRLGLKQPANATVATIEQAVEKAAGLGYPLV 713

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  +  +      + S ++   +L+++++ D +E+    + D    
Sbjct: 714 VRPSYVLGGRAMEIVYDEVDLRRYFQNAVSVSNDAPVLLDRFLDDAVEVDVDAICDGERV 773

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           +    +   +    +    S +S   LPA  +  +I   +++        +  RG+    
Sbjct: 774 LIGGIMEHIE----QAGVHSGDSACSLPAYTLSKEIQDVMRQQVEKLAFELCVRGLMNVQ 829

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           F     + +V+ +E+N +   T     P ++   G    ++
Sbjct: 830 FAV--KNNEVYLIEVNPRAART----VPFVSKATGMPLAKI 864


>gi|182412502|ref|YP_001817568.1| carbamoyl-phosphate synthase, large subunit [Opitutus terrae
           PB90-1]
 gi|177839716|gb|ACB73968.1| carbamoyl-phosphate synthase, large subunit [Opitutus terrae
           PB90-1]
          Length = 1095

 Score = 68.6 bits (167), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 44/288 (15%), Positives = 102/288 (35%), Gaps = 35/288 (12%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLV------- 68
           AL +AG++   +         D D S  L    L  +     ++     DG++       
Sbjct: 606 ALREAGYETVMVNSNPETVSTDYDTSDRLYFEPLTLEDV-IEIYQQEKCDGVIVQFGGQT 664

Query: 69  ----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTMDSQH 122
                A L+        +   +  ++ D+     +++  G+    +         +   H
Sbjct: 665 PLNLAAALKANGANIIGTSPESIEVAEDRKLFAAILNKIGLRQPANRTALSEAEALTFAH 724

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGV 181
            +  P +++P       G+ ++  +      + Q+     G  +LI++++ D IEL    
Sbjct: 725 EVGFPVLLRPSFVLGGRGMFIVYSEAEFKAVIRQAFDVMPGKPVLIDKFLEDAIELDVDC 784

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGC 240
           + D +  V    +   +F          ++  V+P   +P ++ + V++      + +  
Sbjct: 785 ISDGTTSVIGGMLEHIEFAGVHS----GDAAMVMPPHTLPAEMLERVRQATHALARELNV 840

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
            G+    F        ++ LE+N +   T     P +A   G    +L
Sbjct: 841 IGLMNVQFAI--KDGDLYVLEVNPRASRT----VPFVAKAIGVPLAKL 882



 Score = 63.2 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 49/279 (17%), Positives = 95/279 (34%), Gaps = 36/279 (12%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G++V  +              DV          +  ++A  +P     
Sbjct: 29  SGTQACKALKEEGYRVILVNSNPATIMTDPEFADVTYIEPLTVEVLEKIIATERPSALLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G    +  +      +L    +    +   A A   D+   KQ +   G+ V  S  
Sbjct: 89  TLGGQTALNLSMDLHRTGVLARYGVEMIGAKPEAIAKGEDRELFKQAMLKIGLDVAKSRT 148

Query: 113 VNRFTMDSQHLIS---PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
           V       +        P +I+P       G  +    +     +      +   ++L+E
Sbjct: 149 VRSMAEAREAAEELAMFPLIIRPSFTLGGSGGGIAYNKEEFERIVANGLDLSPVHEVLVE 208

Query: 170 QYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKE 226
           + + G  E    VM D       I   ++    ++       +S  V PA  +    Y+ 
Sbjct: 209 ECLLGWKEFEMEVMRDHKDQCVVICSIEN----FDPMGVHTGDSITVAPAMTLTDKEYQV 264

Query: 227 VQRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           ++  +F   + IG   G S   F  DP++ ++  +E+N 
Sbjct: 265 MRDASFAVIREIGVETGGSNIQFSVDPVTGRMVVIEMNP 303


>gi|123440986|ref|YP_001004975.1| carbamoyl phosphate synthase large subunit [Yersinia enterocolitica
           subsp. enterocolitica 8081]
 gi|122087947|emb|CAL10735.1| carbamoyl-phosphate synthase large chain [Yersinia enterocolitica
           subsp. enterocolitica 8081]
          Length = 1077

 Score = 68.6 bits (167), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 49/319 (15%), Positives = 108/319 (33%), Gaps = 52/319 (16%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D +              V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +    Q +L    +    +   A   + D+ R    +   G+    S +
Sbjct: 89  TMGGQTALNCALELERQGVLAEFGVTMIGATADAIDKAEDRRRFDIAMKKIGLDTARSGI 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     +     +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHNMEEALAVAADVGFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTKELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + +   +   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIEN----FDAMGIHTGDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV-----------QPGMTPVSIFP 275
           +  +    + IG   G S   F  +P + ++  +E+N              G        
Sbjct: 265 RNASMAVLREIGVETGGSNVQFSVNPKNGRLIVIEMNPRVSRSSALASKATGF----PIA 320

Query: 276 EMAA--YAGYSFRELLLWM 292
           ++AA    GY+  EL+  +
Sbjct: 321 KIAAKLAVGYTLDELMNDI 339



 Score = 60.9 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 33/221 (14%), Positives = 85/221 (38%), Gaps = 14/221 (6%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           LE   +P   +   A   + D+ R +Q V+  G+    +  V      ++    +  P V
Sbjct: 654 LEAAGVPIIGTSPDAIDRAEDRERFQQAVNRLGLKQPANATVATIEQAVEKAAGLGYPLV 713

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  +  +      + S ++   +L+++++ D +E+    + D    
Sbjct: 714 VRPSYVLGGRAMEIVYDEVDLRRYFQNAVSVSNDAPVLLDRFLDDAVEVDVDAICDGERV 773

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           +    +   +    +    S +S   LPA  +  +I   +++        +  RG+    
Sbjct: 774 LIGGIMEHIE----QAGVHSGDSACSLPAYTLSKEIQDVMRQQVEKLAFELCVRGLMNVQ 829

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           F     + +V+ +E+N +   T     P ++   G    ++
Sbjct: 830 FAV--KNNEVYLIEVNPRAART----VPFVSKATGMPLAKI 864


>gi|332995645|gb|AEF05700.1| acetyl-CoA carboxylase [Alteromonas sp. SN2]
          Length = 447

 Score = 68.6 bits (167), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 34/223 (15%), Positives = 75/223 (33%), Gaps = 21/223 (9%)

Query: 56  NVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
             +H  +G   E+      +E     +         L  DK+ +   +   GVP  P   
Sbjct: 76  IAIHPGYGFLAENADFAEAVEKSGFIFIGPTADTINLMGDKVSAISAMKKAGVPCVPGSD 135

Query: 111 ---ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHG 163
                 N         I  P ++K   GG   G+ V++ +  +   +     ++ +    
Sbjct: 136 GPLTGDNDKNKTIAKRIGYPIIVKAAGGGGGRGMRVVRSEAELISAIETTQAEAGAAFGN 195

Query: 164 DQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPL 221
             + +E++++    +   ++ D   +   +            K          PA  I  
Sbjct: 196 ATVYMEKFLENPRHVEIQILADGQGNAIHLGERDCSMQRRHQK-----VVEEAPAPGISE 250

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +  ++      A   IG RG    +FL+   + + +++E+N 
Sbjct: 251 LMRNKIGDRCRRACVEIGYRGAGTFEFLY--ENGEFYFIEMNT 291


>gi|313632821|gb|EFR99774.1| phosphoribosylaminoimidazole carboxylase, ATPase subunit [Listeria
           seeligeri FSL N1-067]
          Length = 377

 Score = 68.6 bits (167), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 34/198 (17%), Positives = 83/198 (41%), Gaps = 18/198 (9%)

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-ILVNRFTMDSQ-HLISPPYVI 130
           +L+++P    G    +++ D++  K  + S  + + P  I+V++  ++++   I  P V+
Sbjct: 94  DLVDVPQ---GAELLSITQDRILEKAYLESANINIAPYAIIVDKEEIETEIKSIGYPAVL 150

Query: 131 KPLKGG-SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLD 188
           K  +GG    G +V+     I      +    +G  +L E ++    E++  V       
Sbjct: 151 KTAQGGYDGKGQVVLHDADDIERA---ARLLRYGSSVL-EAWIPFEKEISIVVARGKDGQ 206

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           V    V ++         +++  T + PA +  D+++E + +A      +   G+   + 
Sbjct: 207 VETFPVAENVHV------NNILHTTIAPADVSADVHEEAEEIAKKLADVLQLCGVLAVEM 260

Query: 249 LFDPLSRKVFWLEINVQP 266
                   ++  E+  +P
Sbjct: 261 FVTKS-GAIYVNELAPRP 277


>gi|311069036|ref|YP_003973959.1| acetyl-CoA carboxylase biotin carboxylase subunit [Bacillus
           atrophaeus 1942]
 gi|310869553|gb|ADP33028.1| acetyl-CoA carboxylase biotin carboxylase subunit [Bacillus
           atrophaeus 1942]
          Length = 450

 Score = 68.6 bits (167), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 84/221 (38%), Gaps = 18/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     + E + + +      A +    K  +++ +   GVP+ P    
Sbjct: 77  AIHPGYGFLAENADFAELCEEVNVTFVGPSADAISKMGTKDVARETMKLAGVPIVPGSQG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-----SSSWNHGD 164
            I      +     I  P +IK   GG   GI V + ++ +   +       ++++    
Sbjct: 137 IINNAEEAVSLAGEIGYPVIIKATAGGGGKGIRVARTEEELINGIKITQQEAATAFG-NP 195

Query: 165 QLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            + IE+Y++    +   V+ D   +   +            K             +  +I
Sbjct: 196 GVYIEKYIEDFRHVEIQVLADNYGNTIHLGERDCSIQRRLQKLL----EETPSPALDSEI 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +++   A  A +A+G  G    +F++D   ++ +++E+N 
Sbjct: 252 REQMGDAAVKAAKAVGYTGAGTVEFIYDYREQRYYFMEMNT 292


>gi|304387665|ref|ZP_07369851.1| phosphoribosylaminoimidazole carboxylase ATPase subunit PurK
           [Neisseria meningitidis ATCC 13091]
 gi|304338330|gb|EFM04454.1| phosphoribosylaminoimidazole carboxylase ATPase subunit PurK
           [Neisseria meningitidis ATCC 13091]
          Length = 378

 Score = 68.6 bits (167), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 25/193 (12%), Positives = 69/193 (35%), Gaps = 19/193 (9%)

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP-PYVIKPLKGG-S 137
                   A++ ++++ K  +   G+   P   V +    ++      P ++K    G  
Sbjct: 94  VSPSSDCVAIAQNRIQEKAWIRKAGLQTAPYQAVCKAEDITEASTQFLPGILKTATLGYD 153

Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKS 197
             G I +K    +     +    + G   ++E+ VD             + V    +   
Sbjct: 154 GKGQIRVKTVDELKAAFAE----HGGVDCVLEKMVDLRS---------EISVIVCRLNND 200

Query: 198 DFYSYE-LKYSSLNSTH---VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
           +  +++  +    N      ++PA++  D+ ++ +++A      +   G+   +      
Sbjct: 201 NVQTFDPAENIHENGILAYSIVPARLSADVQQQARQMAKRLADELDYVGVLAVEMFVVGD 260

Query: 254 SRKVFWLEINVQP 266
           + ++   EI  +P
Sbjct: 261 THELVVNEIAPRP 273


>gi|239948247|ref|ZP_04700000.1| propionyl-CoA carboxylase alpha chain precursor [Rickettsia
           endosymbiont of Ixodes scapularis]
 gi|239922523|gb|EER22547.1| propionyl-CoA carboxylase alpha chain precursor [Rickettsia
           endosymbiont of Ixodes scapularis]
          Length = 665

 Score = 68.6 bits (167), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 81/221 (36%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+     IL+   +              DK+ +K++    GV   P  + 
Sbjct: 81  AVHPGYGFLSENPNFANILKREGVVLIGPSAGTIKKMGDKIEAKKIAIEAGVSTVPGYMG 140

Query: 114 N----RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD-----LLQSSSWNHGD 164
                +  +D    I  P ++K   GG   G+ V+     +        L  ++S++  D
Sbjct: 141 TINDVKQAVDIAKEIGFPVIVKAAAGGGGRGMRVVNNPTEMANAFESAKLEAANSFS-DD 199

Query: 165 QLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           +L IE+ +     +   ++ D   +   +   +     +  K           + I  DI
Sbjct: 200 RLFIEKLIQTPRHIEIQLIADQYGNSVCLGERECSIQRHHQK----VIEEAPSSFITEDI 255

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +E+ R      Q +G       +F+ D  ++  ++LE+N 
Sbjct: 256 RQEMYRQVISLSQKVGYYSAGTVEFIVD-SNKNFYFLEMNT 295


>gi|146311024|ref|YP_001176098.1| ribosomal protein S6 modification protein [Enterobacter sp. 638]
 gi|166977479|sp|A4W8L7|RIMK_ENT38 RecName: Full=Ribosomal protein S6 modification protein
 gi|145317900|gb|ABP60047.1| SSU ribosomal protein S6P modification protein [Enterobacter sp.
           638]
          Length = 300

 Score = 68.6 bits (167), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 62/289 (21%), Positives = 116/289 (40%), Gaps = 45/289 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV----------DRSVGLVLAHLK 50
           +A+L       R+ +L S K    A    G  V  +D             S+     HL 
Sbjct: 3   IAILS------RDGTLYSCKRLLDAANKRGHVVEILDPLSCYMNISPAASSIHYKGRHLP 56

Query: 51  -PDLAFNVLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV 105
             D     + G+    +G   L Q   E+L   Y  +  +A   + DK+RS Q+++  G+
Sbjct: 57  HFDAVIPRI-GSQMTFYGTAALRQ--FEMLG-SYPLNESVAITRARDKLRSLQLLARQGI 112

Query: 106 --PVCPSILVNRFTMDSQHLISP-PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
             P+         T D   ++   P V+K ++G   +G+++ +  Q+     +  +    
Sbjct: 113 DLPMTGIAHSPDDTSDLIAMVGGAPLVVKLVEGTQGIGVVLAETRQAAES--VIDAFRGL 170

Query: 163 GDQLLIEQYVD---GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI 219
              +L+++Y++   G ++ C V+G+  +   E      DF S   +           A+I
Sbjct: 171 NAHILVQEYIEEAKGRDIRCLVVGNEVVAAIERQAKDGDFRSNLHRGGV--------ARI 222

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268
             DI +  + +A  A Q +G   I+  D      +R    +E+N  PG+
Sbjct: 223 -ADITEREREIAITAAQTLGL-DIAGVD--ILRANRGPLVMEVNASPGL 267


>gi|145589201|ref|YP_001155798.1| carbamoyl phosphate synthase large subunit [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
 gi|145047607|gb|ABP34234.1| carbamoyl-phosphate synthase large subunit [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
          Length = 1087

 Score = 68.6 bits (167), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 26/198 (13%), Positives = 74/198 (37%), Gaps = 8/198 (4%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           LE   +P   +       + D+ R ++++   G+   P+         +     I  P V
Sbjct: 658 LERNGVPIIGTSPDMIDAAEDRERFQKLLQDLGLRQPPNRTARTEEEALKLAEEIGYPLV 717

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++   + +   + ++   +H   +L+++++ D IE     + D +  
Sbjct: 718 VRPSYVLGGRAMEIVHDGRDLERYMREAVKVSHDSPVLLDRFLNDAIECDVDCISDGTKV 777

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                +   +       +S  ++  + P  +     +E++R      + +   G+    F
Sbjct: 778 FIGGVMEHIEQAGV---HSGDSACSLPPYSLSDATVEEIKRQTAAMAKGLHVIGLMNVQF 834

Query: 249 LFDPLSRK--VFWLEINV 264
               +  +  ++ LE+N 
Sbjct: 835 AIQNVDGQDVIYVLEVNP 852



 Score = 65.1 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 53/287 (18%), Positives = 99/287 (34%), Gaps = 46/287 (16%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL D G+KV  +              DV          V  ++A  KPD    
Sbjct: 29  SGAQACKALRDEGYKVILVNSNPATIMTDPEMADVTYIEPITWEVVERIIAAEKPDAILP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      +LE        +   A   + D+ + K  ++  G+    S +
Sbjct: 89  TMGGQTALNCALDLHRHGVLEKYGCELIGASPEAIDKAEDRQKFKNAMTKIGLGSAKSGI 148

Query: 113 VNRFTMDSQHLI-----------SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN 161
               +MD  H +             P VI+P       G  +    +       +    +
Sbjct: 149 A--HSMDEAHEVQQHIQQETGSSGFPVVIRPSFTMGGSGGGIAYNREEFEEICKRGLDLS 206

Query: 162 HGDQLLIEQYVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK- 218
              +LLIE+ + G  E    V+ D + + +   ++   D           +S  V PA+ 
Sbjct: 207 PTRELLIEESLLGWKEFEMEVVRDRNDNCIIVCSIENLDPMGVHT----GDSITVAPAQT 262

Query: 219 IPLDIYKEVQRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
           +    Y+ ++  +    + IG   G S   F  +P+  ++  +E+N 
Sbjct: 263 LTDKEYQIMRNASIAVLREIGVDTGGSNVQFSINPVDGRMIVIEMNP 309


>gi|157878759|ref|XP_001687397.1| carboxylase [Leishmania major strain Friedlin]
 gi|321438056|emb|CBZ11808.1| putative carboxylase [Leishmania major strain Friedlin]
          Length = 665

 Score = 68.6 bits (167), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 42/256 (16%), Positives = 90/256 (35%), Gaps = 30/256 (11%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H  +G   E+G  QA L    I +      +     DK+ SK++  S GV   P  + 
Sbjct: 81  AVHPGYGFLSENGEFQAALHKNNIIFVGPDAHSIEAMGDKIESKRLAHSAGVTCIPGFIG 140

Query: 113 ---VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGDQ 165
               +   +     +  P +IK   GG   G+ V   D            ++ +  + D+
Sbjct: 141 EVKTHEDVLKFAREVGYPVMIKASGGGGGKGMRVAYNDSQCVEYYDMCREEAKAAFNSDK 200

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           +L+E++++    +   V+ D   +   +   +        K             +     
Sbjct: 201 MLVEKFIENPRHIEIQVIADRRGNTLYLPERECSIQRRNQK----VIEEAPSVLLDAKTR 256

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI---FPEMAAYA 281
           K +   A    +A+        + + +P  ++ ++LE+N +       +    P      
Sbjct: 257 KAMGEEAVAMARAVQYVSAGTVENVVNPQ-KQFYFLEMNTR-------LQVEHPITEEIT 308

Query: 282 GYSFRELLLWMVEDAS 297
           G    +L+  M+  A+
Sbjct: 309 GI---DLVEQMLRAAA 321


>gi|146292816|ref|YP_001183240.1| carbamoyl-phosphate synthase L chain, ATP-binding [Shewanella
           putrefaciens CN-32]
 gi|145564506|gb|ABP75441.1| 3-methylcrotonoyl-CoA carboxylase, alpha subunit [Shewanella
           putrefaciens CN-32]
          Length = 689

 Score = 68.6 bits (167), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 83/221 (37%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       E   I +   G  A      K  +K ++++  VP+ P    
Sbjct: 87  AIHPGYGFLSENADFARKCEAAGIVFVGPGSEAIDAMGSKSAAKAIMTAAQVPLVPGYHG 146

Query: 114 NRFTM----DSQHLISPPYVIKPLKGGSSLGIIVIKKD----QSIPLDLLQSSSWNHGDQ 165
           +  T          I  P +IK   GG   G+ +++ +     +I     +++S    D+
Sbjct: 147 DDQTDATLKAEALKIGFPMLIKAAYGGGGKGMRIVEHEGEIMDAINSARREAASSFGNDK 206

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           LL+E+Y+     +   V  D   +   ++           K          PA  +  ++
Sbjct: 207 LLLERYLRHPRHVEVQVFADTFGNAIYLSDRDCSIQRRHQK-----VVEEAPAPGLSDEL 261

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             ++   A  A +AI   G    +FL D    + +++E+N 
Sbjct: 262 RAQMGEAAVAAAKAIDYVGAGTVEFLLDT-DNRFYFMEMNT 301


>gi|315303656|ref|ZP_07874186.1| phosphoribosylaminoimidazole carboxylase, ATPase subunit [Listeria
           ivanovii FSL F6-596]
 gi|313627977|gb|EFR96580.1| phosphoribosylaminoimidazole carboxylase, ATPase subunit [Listeria
           ivanovii FSL F6-596]
          Length = 369

 Score = 68.6 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 36/198 (18%), Positives = 85/198 (42%), Gaps = 18/198 (9%)

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-ILVNRFTMDSQ-HLISPPYVI 130
           EL++IP    G    +++ D++  K  + S  + + P  I+V++  ++ +   I  P V+
Sbjct: 86  ELVDIPQ---GSELLSITQDRILEKAYLESANINIAPYAIIVDKEEIEREIKSIGYPAVL 142

Query: 131 KPLKGG-SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLD 188
           K  +GG    G +V++    I +    +    +G  +L E ++    E++  V       
Sbjct: 143 KTAQGGYDGKGQVVLRDANDIEMA---ARLLRYGSCVL-EAWIPFEKEISIVVARGKDGQ 198

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           V    V ++         +++  T + PA +  D+++E + +A    + +   G+   + 
Sbjct: 199 VETFPVAENVHI------NNILHTSIAPADVSADVHEEAEEIAKKLAEVLQLCGVLAVEM 252

Query: 249 LFDPLSRKVFWLEINVQP 266
                   ++  E+  +P
Sbjct: 253 FVTNS-GAIYVNELAPRP 269


>gi|291531444|emb|CBK97029.1| carbamoyl-phosphate synthase large subunit [Eubacterium siraeum
           70/3]
          Length = 1068

 Score = 68.6 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 50/286 (17%), Positives = 97/286 (33%), Gaps = 33/286 (11%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------------- 49
           G ++E + +   G     AL+  G +V  I+ + +  +   H+                 
Sbjct: 21  GQAAEFDYA---GTQACRALKAEGLEVVLINSNPATIMTDKHMADKIYIEPLTLDVVKKI 77

Query: 50  ----KPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
               KPD   + L G  G    +Q      L    +    +       + D+   K  + 
Sbjct: 78  IKIEKPDSILSTLGGQTGLTLSMQLAEEGFLAENGVKLLGANPETIHKAEDRQAFKDTME 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
           + G P  PS +V      +D   +I  P +++P       G  +      +         
Sbjct: 138 AIGEPCIPSKVVETVEDALDFAEVIHYPVIVRPAFTLGGTGGGIAYSKDELHEIATNGLR 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   Q L+E+ + G  E+   V+ DA  +V  I V   + +     ++  +        
Sbjct: 198 LSPITQTLVEKCISGWKEIEFEVIRDAKGNV--ITVCSMENFDPVGVHTGDSIVIAPAVT 255

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +    Y+ ++  A    QA+   G     F   P S +   +E+N 
Sbjct: 256 LADKEYQMLRTAALNIIQALKVEGGCNCQFALKPDSFEYSVIEVNP 301



 Score = 60.5 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 28/196 (14%), Positives = 76/196 (38%), Gaps = 9/196 (4%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTMDSQHLISPPYV 129
           L+   +    +   +   + D+ +  +++  C +P      V      + + + +  P +
Sbjct: 648 LQESGVRILGTSAESIDDAEDREKFDELLEKCKIPRPKGHTVFTTEEALKAANELGYPVL 707

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           ++P        +I+   D  +   +   ++    + +LI++Y+ G E+    + D     
Sbjct: 708 LRPSYVLGGQNMIIAHCDSDVTEYMTIITATELENPVLIDKYLMGTEVEVDAICDG---- 763

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           T+  +P    +       S +S  V PA+ +   I   +        +A+   G+   + 
Sbjct: 764 TDFLIPGIMEHIERAGVHSGDSISVYPAQTLSDKIKSTIVTYTERLAKALNVIGL--VNI 821

Query: 249 LFDPLSRKVFWLEINV 264
            +   + +V+ +E+N 
Sbjct: 822 QYVVYNNEVYVIEVNP 837


>gi|260578481|ref|ZP_05846395.1| phosphoribosylglycinamide formyltransferase 2 [Corynebacterium
           jeikeium ATCC 43734]
 gi|258603503|gb|EEW16766.1| phosphoribosylglycinamide formyltransferase 2 [Corynebacterium
           jeikeium ATCC 43734]
          Length = 411

 Score = 68.6 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 46/287 (16%), Positives = 95/287 (33%), Gaps = 51/287 (17%)

Query: 19  GKACASALEDAGFKVSQ------------------IDVDR--SVGLVLAHLKPDLAFNVL 58
           G+  A AL+  G +V                    +D+    ++  ++  + P       
Sbjct: 27  GRELAIALQRLGVEVHAADRYAGAPAHLVANKAHVLDIHDGDAIRQLVREVGPHFVVPDS 86

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS-CGVPVCPSILVNRFT 117
                +  ++Q  LE  E+       LA+ L+M++   +       G+P       +   
Sbjct: 87  ETIPAD--VLQE-LEADEVASVVPTALANRLTMNREGIRTFAHDKLGLPNSAFRFASTAD 143

Query: 118 M--DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD--LLQSSSWNHGDQLLIEQYVD 173
               +   I  P V+KP+   S  G   +     +          S  +  ++++EQY+ 
Sbjct: 144 ELARAAEEIGYPCVVKPVMSSSGAGQSYVGGVDELEAAWNAALKHSRTNAQRVMVEQYIP 203

Query: 174 GIELTCGVM---------GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             +    ++         G  +    E    + D   Y   +         PA +  D  
Sbjct: 204 -FDYEVTILAVRSIDPATGREATWFCEPIGHRQDRGDYVESW--------QPAHMSEDAL 254

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP---GM 268
              + +A     A+G RG+   +         V++ E++ +P   GM
Sbjct: 255 DTARSIAARIATALGGRGVYGVELFV--KGDDVYFSEVSPRPHDTGM 299


>gi|261378475|ref|ZP_05983048.1| carbamoyl-phosphate synthase, large subunit [Neisseria cinerea ATCC
           14685]
 gi|269145269|gb|EEZ71687.1| carbamoyl-phosphate synthase, large subunit [Neisseria cinerea ATCC
           14685]
          Length = 1071

 Score = 68.6 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 29/192 (15%), Positives = 72/192 (37%), Gaps = 8/192 (4%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYVIKPL 133
            +    +   +   + D+ R ++V++  G+   P+ + +           I  P V++P 
Sbjct: 652 GVNIIGTSADSIDAAEDRERFQKVLNDLGLRQPPNRIAHNEEEALVKAEEIGYPLVVRPS 711

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEI 192
                  + V+   + +   + ++   +    +L++ ++ + IE+    + D    V   
Sbjct: 712 YVLGGRAMQVVHSAEELQKYMREAVQVSEDSPVLLDFFLNNAIEVDVDCVSDGKDVVIGG 771

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            +   +       +S  +   + P  +  +I  E++R       A+G  G+    F    
Sbjct: 772 IMQHVEQAGI---HSGDSGCSLPPYSLSEEIQDEIRRQTKAMAYALGVVGLMNVQFAV-- 826

Query: 253 LSRKVFWLEINV 264
               VF LE+N 
Sbjct: 827 QDGVVFVLEVNP 838



 Score = 67.5 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 50/278 (17%), Positives = 101/278 (36%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +              DV        ++V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYKVILVNSNPATIMTDPEMADVTYIEPIMWQTVEKIIAKERPDAILP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      +L    +    +   A   + D+ R K+ +   G+    S +
Sbjct: 89  TMGGQTALNCALDLARNGVLAKYNVELIGATEDAIDKAEDRGRFKEAMEKIGLSCPKSFV 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     + +Q  +  P +I+P       G  +            +    +   +LLIEQ
Sbjct: 149 CHTMNEALAAQEQVGFPTLIRPSFTMGGSGGGIAYNKDEFLAICERGFDASPTHELLIEQ 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            V G  E    V+ D + +   I   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SVLGWKEYEMEVVRDKADNCIIICSIEN----FDPMGVHTGDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RNASLAVLREIGVDTGGSNVQFAVNPENGEMIVIEMNP 302


>gi|238507175|ref|XP_002384789.1| pyruvate carboxylase, putative [Aspergillus flavus NRRL3357]
 gi|220689502|gb|EED45853.1| pyruvate carboxylase, putative [Aspergillus flavus NRRL3357]
          Length = 350

 Score = 68.6 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 31/206 (15%), Positives = 72/206 (34%), Gaps = 17/206 (8%)

Query: 69  QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLI 124
           QA+L+   + +            DK+ ++++    G P+       +   +  M      
Sbjct: 96  QAVLD-AGLTWIGPDPSVIEALGDKVEARRIALRVGAPLVAGSNGPVSTAKEVMAFAREH 154

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPL----DLLQSSSWNHGDQLLIEQYV-DGIELTC 179
             P VIK   GG   G+ V      +       + ++++     +  +E+++     +  
Sbjct: 155 GLPIVIKAAHGGGGRGLKVAWTMDEVTECYGSAVREATAAFGRGECFVERFLHRPRHIEA 214

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAI 238
            ++ D   +V  +           ++          PA  +  +  +++Q  A     A 
Sbjct: 215 QILADKHGNVVVVGT-----RDCSVQRRHQKLIEEAPAPLLTTEQQEKIQNAAQSICSAA 269

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINV 264
           G  G    +FL   +   + +LE+N 
Sbjct: 270 GYSGAGTVEFLL-GVDGSISFLEVNT 294


>gi|153953287|ref|YP_001394052.1| carbamoyl phosphate synthase large subunit [Clostridium kluyveri
           DSM 555]
 gi|219853919|ref|YP_002471041.1| hypothetical protein CKR_0576 [Clostridium kluyveri NBRC 12016]
 gi|146346168|gb|EDK32704.1| CarB1 [Clostridium kluyveri DSM 555]
 gi|219567643|dbj|BAH05627.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 1068

 Score = 68.6 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 29/213 (13%), Positives = 78/213 (36%), Gaps = 14/213 (6%)

Query: 71  ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV--PVCPSILVNRFTMDSQHLISPPY 128
            L+   I    +      ++ D+ +   ++    +  P    +      ++    +  P 
Sbjct: 648 FLKEKNIVTLGTTADQIDMAEDREKFDVLLEKLNIKRPKGKGVWTIDEGLEEGRKLGFPV 707

Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD 188
           +++P       G+ +   ++ +   L  + + +  + +LI++Y+ G E+    + D    
Sbjct: 708 LVRPSYVLGGQGMEITYTEKELAYYLSMAFNKDKKNPILIDKYLMGREIEVDAICDGEDV 767

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           +    +   +           +S  + PA  +  D+ ++V          IG +G+    
Sbjct: 768 LIPGIMEHLERAGVHS----GDSITMYPAQNVNDDMREKVLEYTVKLSLGIGIKGMINIQ 823

Query: 248 FLFDPLSRKVFWLEIN-----VQPGMTPVSIFP 275
           F+       ++ +E+N       P ++ VS  P
Sbjct: 824 FI--EYEGNLYVIEVNPRASRTVPYISKVSNVP 854



 Score = 53.2 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 49/287 (17%), Positives = 99/287 (34%), Gaps = 35/287 (12%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQID-------VDRSVGL--------------V 45
           G ++E + S   G     +L + G +V  ++        DR V                V
Sbjct: 21  GQAAEFDYS---GTQACESLREEGMEVVLVNSNPATIMTDREVADKVYIEPLTVEFIEKV 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   KPD     + G    +  V+     ILE   +    + I A     D+   +  ++
Sbjct: 78  IKKEKPDSILPGMGGQTALNLTVELYDNKILEKYNVKIIGTSIEAIKKGEDRELFRDTMN 137

Query: 102 SCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
               PV  S +V      +     I  P +++P       G  + + ++ + + L     
Sbjct: 138 KINQPVVESDIVTDIESGIRFAQKIGYPVIVRPAYTLGGTGGGIAENEEELKIILESGLE 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   Q+L+E+ + G  E+   VM D            +      +   + +S  V P++
Sbjct: 198 LSSIGQVLLEKSIKGWKEIEYEVMRD---SFGNCITVCNMENIDPVGIHTGDSIVVAPSQ 254

Query: 219 -IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +    Y+ ++  +      +   G        +P S +   +EIN 
Sbjct: 255 TLSDKEYQMLRTASIDIINEVEIEGGCNVQLALNPHSFEYVVIEINP 301


>gi|91775132|ref|YP_544888.1| carbamoyl-phosphate synthase large subunit [Methylobacillus
           flagellatus KT]
 gi|91709119|gb|ABE49047.1| carbamoyl-phosphate synthase large subunit [Methylobacillus
           flagellatus KT]
          Length = 1068

 Score = 68.6 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 27/196 (13%), Positives = 74/196 (37%), Gaps = 8/196 (4%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           LE   +P   +   A   + D+ R +Q++    +   P+         +     I  P V
Sbjct: 648 LEKAGVPIIGTSPDAIDRAEDRERFQQMLQELDLKQPPNRTARTPEEAIRLAQEIGYPLV 707

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++ +   +   + ++   ++   +L+++++ D +E+    + D    
Sbjct: 708 VRPSYVLGGRAMEIVHEQAQLERYMREAVKVSNESPVLLDRFLNDALEVDVDALSDGEDV 767

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           +    +   +       +S  ++  + P  +   +  E++       +A+G  G+    F
Sbjct: 768 IIGGIMEHVEQAGV---HSGDSACSLPPYSLSPAMQDELREQTVKMAKALGVVGLMNVQF 824

Query: 249 LFDPLSRKVFWLEINV 264
                   V+ LE+N 
Sbjct: 825 AI--QGETVYVLEVNP 838



 Score = 62.8 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 48/278 (17%), Positives = 98/278 (35%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVDRSVGL------------VLAHLKPDLAFN 56
           SG     AL + G++V  +         D D +               ++A  +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPDMADATYIEPVTWQMVEKIIAIERPDALLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      +LE   +    +   A   + D+ + K  ++  G+    S +
Sbjct: 89  TMGGQTALNCALDLAKHGVLEKYHVELIGASKEAIDKAEDREKFKAAMTKIGLGSARSAV 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     +  Q  I  P +I+P       G  +    +       +    +   +LLIE+
Sbjct: 149 AHSMEEALQVQASIGYPAIIRPSFTMGGSGGGIAYNREEFMTICERGLEASPTSELLIEE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D+  +   I   ++ D           +S  V PA+ +    Y+ +
Sbjct: 209 SLLGWKEYEMEVVRDSQDNCIIICSIENLDPMGVHT----GDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P   ++  +E+N 
Sbjct: 265 RNASLAVLREIGVDTGGSNVQFAINPDDGRMIVIEMNP 302


>gi|312133156|ref|YP_004000495.1| protein [Bifidobacterium longum subsp. longum BBMN68]
 gi|311772352|gb|ADQ01840.1| Hypothetical protein BBMN68_891 [Bifidobacterium longum subsp.
           longum BBMN68]
          Length = 592

 Score = 68.6 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 31/205 (15%), Positives = 72/205 (35%), Gaps = 15/205 (7%)

Query: 69  QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN----RFTMDSQHLI 124
           QA+L+   + +         +  DK+ ++++ +  G P+ P  +V     +  +      
Sbjct: 92  QAVLD-AGLVWIGPSPHTIRILGDKVEARRIAAEVGAPMAPGTIVPVHDPKEVVRFAKEH 150

Query: 125 SPPYVIKPLKGGSSLGIIVIK----KDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTC 179
             P  IK + GG   G+ V++     +++      ++          +E+++D    +  
Sbjct: 151 GLPIAIKAVHGGGGRGLKVVRRLEDVEEAFESATREAEVAFGNGDCFLERFLDRPRHVEV 210

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
            ++ D   DV  I            K             +   I + ++R A    +  G
Sbjct: 211 QILADTHGDVKAIGTRDCSLQRRNQK----LIEEAPAPFLSDAITEHLKRTAVAICRKAG 266

Query: 240 CRGISRSDFLFDPLSRKVFWLEINV 264
                  +FL       + ++E+N 
Sbjct: 267 YVSAGTVEFLV-ADDGTMSFMEVNT 290


>gi|126458740|ref|YP_001055018.1| carbamoyl phosphate synthase large subunit [Pyrobaculum
           calidifontis JCM 11548]
 gi|126248461|gb|ABO07552.1| carbamoyl-phosphate synthase large subunit [Pyrobaculum
           calidifontis JCM 11548]
          Length = 1025

 Score = 68.6 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 47/303 (15%), Positives = 102/303 (33%), Gaps = 46/303 (15%)

Query: 18  SGKACASALEDAGFK--------------------VSQIDVDRSVGL-VLAHLKPDLAFN 56
           SG     A ++ G +                    V  I + R     VL   +PD    
Sbjct: 26  SGSQALKAFKEEGIETVLVNPNIATIQTSKILADRVYFIPIQRPFLEGVLEKERPDAVAC 85

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
              G       V+      L    +    + +     ++ +   ++ +   G+P  PS  
Sbjct: 86  GFGGQTALSACVELDESGALAKYGVRVIGTPVRGIRRALSRDLFQRAMREAGIPTPPSKP 145

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     I  P V++        G  V K ++++   + ++ + +   ++L+E+
Sbjct: 146 ARSPEEALAVAAEIGYPVVVRVSFNLGGAGAFVAKTEEALRARVYKAFAQSAIGEVLVEK 205

Query: 171 YVDG-IELTCGVMGD-----ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDI 223
           Y++G  E+   V+ D     A++   E   P            + +S  V P   +  + 
Sbjct: 206 YLEGWKEVEFEVVRDSYDNVAAVVCMENVDPMGVH--------TGDSIVVAPCLTLTDEE 257

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283
           Y++ + ++    +AI   G        +    + + +E    P M+  S     +  +GY
Sbjct: 258 YQKARDISIGVARAIELVGEGNVQVAVNYAGPEQYAIE--TNPRMSRSS--ALASKASGY 313

Query: 284 SFR 286
              
Sbjct: 314 PLA 316



 Score = 62.1 bits (150), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 44/311 (14%), Positives = 110/311 (35%), Gaps = 39/311 (12%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNV 57
           G+S E + S       A  L + G +V+ +         D D    L    +  +   +V
Sbjct: 554 GVSVEFDWSTV---NLAVELRNRGHRVAILNYNPETVSTDWDVVDKLYFDEITVERVLDV 610

Query: 58  LHGNFGE-------DGLV-QAI---LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP 106
           +    G+        G + Q +   LE   +    +   +   + D+ +  +++   G+ 
Sbjct: 611 VEKEGGDVAVVLYAGGQIGQRLYVPLERAGVKIGGTRASSIDAAEDRYKFSKLLDKLGIR 670

Query: 107 VCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164
             P          +     +  P +++P        +  +     +   L +++  +   
Sbjct: 671 QPPWFTATSIDEALKLAEELGYPVLVRPSYVLGGTYMAAVYSPGELAEFLTKAAKVSGRY 730

Query: 165 QLLIEQYVD-GIELTC-GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD 222
            +++ +++  GIE     V     L  T I   +         +S  ++  + P ++   
Sbjct: 731 PVVVSKFMPWGIEAEVDAVSDGRRLVATPIEHVEPPGV-----HSGDSTMVLPPRRLGDS 785

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAG 282
             K++  +     + +  RG     FL    +  V+ +E N++      S+ P ++   G
Sbjct: 786 AIKKMIDVVHSLARELEVRGPMNVQFLV---NDDVYVIEANLR---VSRSM-PFVSKATG 838

Query: 283 YSFRELLLWMV 293
            ++  L+  ++
Sbjct: 839 VNYMSLVADVL 849


>gi|219666420|ref|YP_002456855.1| carbamoyl phosphate synthase large subunit [Desulfitobacterium
           hafniense DCB-2]
 gi|219536680|gb|ACL18419.1| carbamoyl-phosphate synthase, large subunit [Desulfitobacterium
           hafniense DCB-2]
          Length = 1075

 Score = 68.6 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 52/288 (18%), Positives = 111/288 (38%), Gaps = 37/288 (12%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQIDVDRS---------------------VGLV 45
           G ++E + S   G     AL++ G++V  ++ + +                     +  +
Sbjct: 21  GQAAEFDYS---GTQACKALKNLGYEVVLVNSNPATIMTDAGTADATYIEPLNVQRITEI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   +PD     L G  G +   +     IL+   +      + A     D++  K+ + 
Sbjct: 78  IEKERPDALLPNLGGQSGLNLSSELAKAGILDHYGVKVIGVQLDAIERGEDRIAFKETME 137

Query: 102 SCGVPVC---PSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS 158
             G+ +    P+  V      +Q  +  P VI+P       G  ++   + +   + +  
Sbjct: 138 RLGIDMPKSSPAYTVEEAEKIAQE-LGYPVVIRPAYTLGGTGGGLVYNVEELKTIVNRGI 196

Query: 159 SWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
           S +   Q+L+E+ V G  EL   V+ D+   +  +   ++          + +S    P 
Sbjct: 197 SASMIGQVLVEESVLGWEELELEVVRDSKNQMITVCFIENIDAIGVH---TGDSFCSAPM 253

Query: 218 -KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             I  ++ + +Q+ A+   +AI   G +   F  DP + +V  +EIN 
Sbjct: 254 LTISQELQERLQKYAYSIVEAIEVIGGTNVQFAHDPKTDRVVIIEINP 301



 Score = 48.2 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/200 (11%), Positives = 74/200 (37%), Gaps = 8/200 (4%)

Query: 68  VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLIS 125
           + A L+   +    +       + D+ + ++++    +P+  + + +     + +  +I 
Sbjct: 642 IAAQLQEAGVRILGTVPEVIDQAEDRDQFRKMMEKLAIPMPQAGMASTLEEALAAAEMIG 701

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGD 184
            P +++P       G+ ++  ++ +   +  +        +LI+++++  IE     + D
Sbjct: 702 YPVMVRPSYVLGGRGMEIVFDEEQLREYVAAAVDITPERPILIDKFLENAIEAEADAVSD 761

Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244
            +       +   +       +S  ++  + P  I     + +        Q +   G+ 
Sbjct: 762 GTHAFVPAVMEHIELAGI---HSGDSACVIPPLTIADRHLRTIIDYTQRIAQELHVVGL- 817

Query: 245 RSDFLFDPLSRKVFWLEINV 264
             +  +     KV+ LE N 
Sbjct: 818 -MNIQYAIAEDKVYVLEANP 836


>gi|51594975|ref|YP_069166.1| carbamoyl phosphate synthase large subunit [Yersinia
           pseudotuberculosis IP 32953]
 gi|145600406|ref|YP_001164482.1| carbamoyl phosphate synthase large subunit [Yersinia pestis
           Pestoides F]
 gi|153947267|ref|YP_001402408.1| carbamoyl phosphate synthase large subunit [Yersinia
           pseudotuberculosis IP 31758]
 gi|170025797|ref|YP_001722302.1| carbamoyl phosphate synthase large subunit [Yersinia
           pseudotuberculosis YPIII]
 gi|186893977|ref|YP_001871089.1| carbamoyl phosphate synthase large subunit [Yersinia
           pseudotuberculosis PB1/+]
 gi|51588257|emb|CAH19864.1| carbamoyl-phosphate synthase, large subunit [Yersinia
           pseudotuberculosis IP 32953]
 gi|145212102|gb|ABP41509.1| carbamoyl-phosphate synthase large subunit [Yersinia pestis
           Pestoides F]
 gi|152958762|gb|ABS46223.1| carbamoyl-phosphate synthase, large subunit [Yersinia
           pseudotuberculosis IP 31758]
 gi|169752331|gb|ACA69849.1| carbamoyl-phosphate synthase, large subunit [Yersinia
           pseudotuberculosis YPIII]
 gi|186697003|gb|ACC87632.1| carbamoyl-phosphate synthase, large subunit [Yersinia
           pseudotuberculosis PB1/+]
          Length = 1077

 Score = 68.6 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 42/278 (15%), Positives = 96/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D +              V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +    Q +L    +    +   A   + D+ R    +   G+    S +
Sbjct: 89  TMGGQTALNCALELERQGVLAEFGVTMIGATADAIDKAEDRRRFDIAMKKIGLDTARSGI 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     +     +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHNMEEALAVAADVGFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTKELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + +   +   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIEN----FDAMGIHTGDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RNASMAVLREIGVETGGSNVQFSVNPKNGRLIVIEMNP 302



 Score = 59.8 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 33/221 (14%), Positives = 85/221 (38%), Gaps = 14/221 (6%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           LE   +P   +   A   + D+ R +Q V+  G+    +  V      ++    +  P V
Sbjct: 654 LEAAGVPIIGTSPDAIDRAEDRERFQQAVNRLGLKQPANATVATIEQAVEKATGLGYPLV 713

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  +  +      + S ++   +L+++++ D +E+    + D    
Sbjct: 714 VRPSYVLGGRAMEIVYDEIDLRRYFQNAVSVSNDAPVLLDRFLDDAVEVDVDAICDGERV 773

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           +    +   +    +    S +S   LPA  +  +I   +++        +  RG+    
Sbjct: 774 LIGGIMEHIE----QAGVHSGDSACSLPAYTLSKEIQDVMRQQVEKLAFELCVRGLMNVQ 829

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           F     + +V+ +E+N +   T     P ++   G    ++
Sbjct: 830 FAV--KNNEVYLIEVNPRAART----VPFVSKATGMPLAKI 864


>gi|326382160|ref|ZP_08203852.1| carbamoyl phosphate synthase large subunit [Gordonia neofelifaecis
           NRRL B-59395]
 gi|326198890|gb|EGD56072.1| carbamoyl phosphate synthase large subunit [Gordonia neofelifaecis
           NRRL B-59395]
          Length = 1116

 Score = 68.6 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 50/305 (16%), Positives = 107/305 (35%), Gaps = 44/305 (14%)

Query: 22  CASAL--EDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQA 70
             +AL   +AG++   +         D D +  L    L  +    V H    E G V  
Sbjct: 598 VHAALTLSEAGYETVMVNCNPETVSTDYDTADRLYFEPLTFEDVLEVYHAES-ESGTVAG 656

Query: 71  I---------------LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR 115
           +               LE   +P   +   A  L+ D+    +V+    +P         
Sbjct: 657 VIVQLGGQTPLGLAARLEAAGVPIVGTSPAAIDLAEDRGEFGEVLVKADLPAPQFGTATT 716

Query: 116 FT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
           F    D    I  P +++P       G+ ++  +Q +   +  ++  +    +L++++++
Sbjct: 717 FEGARDIASSIGYPVLVRPSYVLGGRGMQIVYDEQGLADYIANATEISDDRPVLVDRFLE 776

Query: 174 G-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
           G +E+    + D         +   +       +S  ++  + P  +  D+ + V+    
Sbjct: 777 GAVEIDVDALCDGDEVYIGGIMEHIEEAGI---HSGDSACALPPITLGPDVIERVRVSTT 833

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEMAAYA----GY 283
              + +G RG+    +     +  ++ LE N       P ++  +  P   A A    G 
Sbjct: 834 ALAKGLGVRGLMNVQYAL--ANDVLYVLEANPRASRTVPFVSKATSVPLAKACARVMLGM 891

Query: 284 SFREL 288
           S  EL
Sbjct: 892 SIAEL 896



 Score = 52.4 bits (125), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 43/242 (17%), Positives = 86/242 (35%), Gaps = 13/242 (5%)

Query: 33  VSQIDVDRSVGLVLAHLKP-DLAFNVLHGNFGEDGLV----QAILELLEIPYTHSGILAS 87
           ++   +++ +    A   P D     L G    +  V    Q IL   +I    +   A 
Sbjct: 69  ITPQYIEKVIQTEAAAGHPIDAVLATLGGQTALNAAVGLHDQGILAKYDIELIGADFDAI 128

Query: 88  ALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIK 145
               D+   K +V+  G     S + +           +  P V++P      LG  +  
Sbjct: 129 QRGEDRQMFKDIVTKVGGESARSRVCHTMDEVHATVAELGYPVVVRPSFTMGGLGSGMAY 188

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYEL 204
            +  +        + +    +LIE+ + G  E    +M D   +V  I   ++      +
Sbjct: 189 DEADLDRIAGGGLAASPTANVLIEESILGWKEFELELMRDNKDNVVVICSIENVD---PV 245

Query: 205 KYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEI 262
              + +S  V PA  +    Y+ ++ L+    + +G   G     F  DP   ++  +E+
Sbjct: 246 GVHTGDSITVAPAMTLTDREYQIMRDLSIAILREVGVDTGGCNIQFAQDPRDGRLVVIEM 305

Query: 263 NV 264
           N 
Sbjct: 306 NP 307


>gi|241563394|ref|XP_002401686.1| propionyl-coenzyme A carboxylase, alpha polypeptide, putative
           [Ixodes scapularis]
 gi|215501878|gb|EEC11372.1| propionyl-coenzyme A carboxylase, alpha polypeptide, putative
           [Ixodes scapularis]
          Length = 655

 Score = 68.6 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 81/221 (36%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+     IL+   +              DK+ +K++    GV   P  + 
Sbjct: 71  AVHPGYGFLSENPNFANILKREGVVLIGPSAGTIKKMGDKIEAKKIAIEAGVSTVPGYMG 130

Query: 114 N----RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD-----LLQSSSWNHGD 164
                +  +D    I  P ++K   GG   G+ V+     +        L  ++S++  D
Sbjct: 131 TINDVKQAVDIAKEIGFPVIVKAAAGGGGRGMRVVNNPTEMANAFESAKLEAANSFS-DD 189

Query: 165 QLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           +L IE+ +     +   ++ D   +   +   +     +  K           + I  DI
Sbjct: 190 RLFIEKLIQTPRHIEIQLIADQYGNSVCLGERECSIQRHHQK----VIEEAPSSFITEDI 245

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +E+ R      Q +G       +F+ D  ++  ++LE+N 
Sbjct: 246 RQEMYRQVISLSQKVGYYSAGTVEFIVD-SNKNFYFLEMNT 285


>gi|159898544|ref|YP_001544791.1| phosphoribosylglycinamide synthetase [Herpetosiphon aurantiacus
           ATCC 23779]
 gi|159891583|gb|ABX04663.1| phosphoribosylglycinamide synthetase [Herpetosiphon aurantiacus
           ATCC 23779]
          Length = 407

 Score = 68.6 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 38/217 (17%), Positives = 77/217 (35%), Gaps = 14/217 (6%)

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGV-PV-CPSILVNRFTMDSQHLISPPYVIKP 132
           L++PY          +  K   +QV+    + P    S+               P V+KP
Sbjct: 92  LKLPY--HSSATIHYTRQKDAMRQVLREANLDPTIAQSVETADDIKVFGERYGYPLVLKP 149

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192
             G +S+G+ +I+    I        +   G  +L+E+Y+ G E +     +        
Sbjct: 150 RDGRASMGVSIIRSAAEIATAQAWFEAGAAGHAMLVEEYLSGEEYSVEAFSEYGQHHIIC 209

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR-GISRSDFLFD 251
              K     ++   +S+ + H LPA +P     E+         A+  + G S ++ +  
Sbjct: 210 VTQK-----FKDPQTSVETGHCLPAPLPQATVAEITSFVEQVLTALDLQNGPSHTEIILT 264

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
               ++    +     +   SI   +   +G    +L
Sbjct: 265 ARGPRI----VETHARLAGDSIVELIELASGIDVDQL 297


>gi|120599113|ref|YP_963687.1| carbamoyl-phosphate synthase L chain, ATP-binding [Shewanella sp.
           W3-18-1]
 gi|120559206|gb|ABM25133.1| 3-methylcrotonoyl-CoA carboxylase, alpha subunit [Shewanella sp.
           W3-18-1]
          Length = 689

 Score = 68.6 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 83/221 (37%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       E   I +   G  A      K  +K ++++  VP+ P    
Sbjct: 87  AIHPGYGFLSENADFARKCEAAGIVFVGPGSEAIDAMGSKSAAKAIMTAAQVPLVPGYHG 146

Query: 114 NRFTM----DSQHLISPPYVIKPLKGGSSLGIIVIKKD----QSIPLDLLQSSSWNHGDQ 165
           +  T          I  P +IK   GG   G+ +++ +     +I     +++S    D+
Sbjct: 147 DDQTDATLKAEALKIGFPMLIKAAYGGGGKGMRIVEHEGEIMDAINSARREAASSFGNDK 206

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           LL+E+Y+     +   V  D   +   ++           K          PA  +  ++
Sbjct: 207 LLLERYLRHPRHVEVQVFADTFGNAIYLSDRDCSIQRRHQK-----VVEEAPAPGLSDEL 261

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             ++   A  A +AI   G    +FL D    + +++E+N 
Sbjct: 262 RAQMGEAAVAAAKAIDYVGAGTVEFLLDT-DNRFYFMEMNT 301


>gi|238786676|ref|ZP_04630477.1| Carbamoyl-phosphate synthase large chain [Yersinia frederiksenii
           ATCC 33641]
 gi|238725044|gb|EEQ16683.1| Carbamoyl-phosphate synthase large chain [Yersinia frederiksenii
           ATCC 33641]
          Length = 1077

 Score = 68.6 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 42/278 (15%), Positives = 96/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D +              V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +    Q +L    +    +   A   + D+ R    +   G+    S +
Sbjct: 89  TMGGQTALNCALELERQGVLAEFGVTMIGATADAIDKAEDRRRFDIAMKKIGLDTARSGI 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     +     +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHNMEEALAVAADVGFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTKELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + +   +   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIEN----FDAMGIHTGDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RNASMAVLREIGVETGGSNVQFSVNPKNGRLIVIEMNP 302



 Score = 60.5 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 33/221 (14%), Positives = 85/221 (38%), Gaps = 14/221 (6%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           LE   +P   +   A   + D+ R +Q V+  G+    +  V      ++    +  P V
Sbjct: 654 LEAAGVPVIGTSPDAIDRAEDRERFQQAVNRLGLKQPANATVATIEQAVEKASGLGYPLV 713

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  +  +      + S ++   +L+++++ D +E+    + D    
Sbjct: 714 VRPSYVLGGRAMEIVYDEVDLRRYFQNAVSVSNDAPVLLDRFLDDAVEVDVDAICDGERV 773

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           +    +   +    +    S +S   LPA  +  +I   +++        +  RG+    
Sbjct: 774 LIGGIMEHIE----QAGVHSGDSACSLPAYTLSKEIQDVMRQQVEKLAFELCVRGLMNVQ 829

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           F     + +V+ +E+N +   T     P ++   G    ++
Sbjct: 830 FAV--KNNEVYLIEVNPRAART----VPFVSKATGMPLAKI 864


>gi|22127566|ref|NP_670989.1| carbamoyl phosphate synthase large subunit [Yersinia pestis KIM 10]
 gi|45443429|ref|NP_994968.1| carbamoyl phosphate synthase large subunit [Yersinia pestis biovar
           Microtus str. 91001]
 gi|108810065|ref|YP_653981.1| carbamoyl phosphate synthase large subunit [Yersinia pestis
           Antiqua]
 gi|108810520|ref|YP_646287.1| carbamoyl phosphate synthase large subunit [Yersinia pestis
           Nepal516]
 gi|150260481|ref|ZP_01917209.1| carbamoyl-phosphate synthase large chain [Yersinia pestis
           CA88-4125]
 gi|162418950|ref|YP_001605358.1| carbamoyl phosphate synthase large subunit [Yersinia pestis Angola]
 gi|165927321|ref|ZP_02223153.1| carbamoyl-phosphate synthase, large subunit [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165937764|ref|ZP_02226325.1| carbamoyl-phosphate synthase, large subunit [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166008680|ref|ZP_02229578.1| carbamoyl-phosphate synthase, large subunit [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166211869|ref|ZP_02237904.1| carbamoyl-phosphate synthase, large subunit [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|167401670|ref|ZP_02307164.1| carbamoyl-phosphate synthase, large subunit [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167421983|ref|ZP_02313736.1| carbamoyl-phosphate synthase, large subunit [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167426016|ref|ZP_02317769.1| carbamoyl-phosphate synthase, large subunit [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|218927680|ref|YP_002345555.1| carbamoyl phosphate synthase large subunit [Yersinia pestis CO92]
 gi|229836935|ref|ZP_04457100.1| carbamoyl-phosphate synthase large subunit [Yersinia pestis
           Pestoides A]
 gi|229840369|ref|ZP_04460528.1| carbamoyl-phosphate synthase large subunit [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229842449|ref|ZP_04462604.1| carbamoyl-phosphate synthase large subunit [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229900708|ref|ZP_04515832.1| carbamoyl-phosphate synthase large subunit [Yersinia pestis
           Nepal516]
 gi|270487923|ref|ZP_06204997.1| carbamoyl-phosphate synthase, large subunit [Yersinia pestis KIM
           D27]
 gi|294502578|ref|YP_003566640.1| carbamoyl-phosphate synthase large subunit [Yersinia pestis
           Z176003]
 gi|22095514|sp|Q8ZIL4|CARB_YERPE RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|21960671|gb|AAM87240.1|AE013972_7 carbamoyl-phosphate synthase large subunit [Yersinia pestis KIM 10]
 gi|45438298|gb|AAS63845.1| carbamoyl-phosphate synthase large chain [Yersinia pestis biovar
           Microtus str. 91001]
 gi|108774168|gb|ABG16687.1| carbamoyl-phosphate synthase large subunit [Yersinia pestis
           Nepal516]
 gi|108781978|gb|ABG16036.1| carbamoyl-phosphate synthase large subunit [Yersinia pestis
           Antiqua]
 gi|115346291|emb|CAL19162.1| carbamoyl-phosphate synthase large chain [Yersinia pestis CO92]
 gi|149289889|gb|EDM39966.1| carbamoyl-phosphate synthase large chain [Yersinia pestis
           CA88-4125]
 gi|162351765|gb|ABX85713.1| carbamoyl-phosphate synthase, large subunit [Yersinia pestis
           Angola]
 gi|165914176|gb|EDR32792.1| carbamoyl-phosphate synthase, large subunit [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165920783|gb|EDR38031.1| carbamoyl-phosphate synthase, large subunit [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165992019|gb|EDR44320.1| carbamoyl-phosphate synthase, large subunit [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166206615|gb|EDR51095.1| carbamoyl-phosphate synthase, large subunit [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|166960120|gb|EDR56141.1| carbamoyl-phosphate synthase, large subunit [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167049052|gb|EDR60460.1| carbamoyl-phosphate synthase, large subunit [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167054939|gb|EDR64739.1| carbamoyl-phosphate synthase, large subunit [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|229682047|gb|EEO78139.1| carbamoyl-phosphate synthase large subunit [Yersinia pestis
           Nepal516]
 gi|229690759|gb|EEO82813.1| carbamoyl-phosphate synthase large subunit [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229696735|gb|EEO86782.1| carbamoyl-phosphate synthase large subunit [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229705878|gb|EEO91887.1| carbamoyl-phosphate synthase large subunit [Yersinia pestis
           Pestoides A]
 gi|262360608|gb|ACY57329.1| carbamoyl-phosphate synthase large subunit [Yersinia pestis
           D106004]
 gi|262364554|gb|ACY61111.1| carbamoyl-phosphate synthase large subunit [Yersinia pestis
           D182038]
 gi|270336427|gb|EFA47204.1| carbamoyl-phosphate synthase, large subunit [Yersinia pestis KIM
           D27]
 gi|294353037|gb|ADE63378.1| carbamoyl-phosphate synthase large subunit [Yersinia pestis
           Z176003]
 gi|320016956|gb|ADW00528.1| carbamoyl-phosphate synthase large subunit [Yersinia pestis biovar
           Medievalis str. Harbin 35]
          Length = 1077

 Score = 68.6 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 42/278 (15%), Positives = 96/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D +              V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNLATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +    Q +L    +    +   A   + D+ R    +   G+    S +
Sbjct: 89  TMGGQTALNCALELERQGVLAEFGVTMIGATADAIDKAEDRRRFDIAMKKIGLDTARSGI 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     +     +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHNMEEALAVAADVGFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTKELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + +   +   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIEN----FDAMGIHTGDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RNASMAVLREIGVETGGSNVQFSVNPKNGRLIVIEMNP 302



 Score = 59.8 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 33/221 (14%), Positives = 85/221 (38%), Gaps = 14/221 (6%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           LE   +P   +   A   + D+ R +Q V+  G+    +  V      ++    +  P V
Sbjct: 654 LEAAGVPIIGTSPDAIDRAEDRERFQQAVNRLGLKQPANATVATIEQAVEKATGLGYPLV 713

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  +  +      + S ++   +L+++++ D +E+    + D    
Sbjct: 714 VRPSYVLGGRAMEIVYDEIDLRRYFQNAVSVSNDAPVLLDRFLDDAVEVDVDAICDGERV 773

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           +    +   +    +    S +S   LPA  +  +I   +++        +  RG+    
Sbjct: 774 LIGGIMEHIE----QAGVHSGDSACSLPAYTLSKEIQDVMRQQVEKLAFELCVRGLMNVQ 829

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           F     + +V+ +E+N +   T     P ++   G    ++
Sbjct: 830 FAV--KNNEVYLIEVNPRAART----VPFVSKATGMPLAKI 864


>gi|311067614|ref|YP_003972537.1| carbamoyl phosphate synthase large subunit [Bacillus atrophaeus
           1942]
 gi|310868131|gb|ADP31606.1| carbamoyl phosphate synthase large subunit [Bacillus atrophaeus
           1942]
          Length = 1030

 Score = 68.6 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 35/196 (17%), Positives = 79/196 (40%), Gaps = 11/196 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL--ISPPYV 129
           LE   I    +         D+ +  +++   G+               Q    I  P +
Sbjct: 650 LEKAGITLLGTSFETLDALEDRDQFYKLLDELGLAHAKGETAYSKEEAVQKAKGIGYPVL 709

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           I+P      +G+++++ ++++   L   ++  +   +LI+QY+ G E+   ++ D     
Sbjct: 710 IRPSYVIGGMGMMIVESEEALSQLLDDENAMPY--PILIDQYISGKEVELDLISDGE--- 764

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
            E+ +P    +       S +S  VLP   +  +  + +++ A    Q +  +GI    F
Sbjct: 765 -EVFIPTYVEHIERAGVHSGDSFAVLPGPSLTAEQEQGMKKAARKIAQKLSFKGIMNIQF 823

Query: 249 LFDPLSRKVFWLEINV 264
           + D  +  +  LE+N 
Sbjct: 824 VID--NGNILVLEVNP 837



 Score = 62.1 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 48/286 (16%), Positives = 103/286 (36%), Gaps = 33/286 (11%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQID---------------------VDRSVGLV 45
           G ++E + S   G     AL++ G++V  ++                        S+  +
Sbjct: 21  GQAAEFDYS---GTQGCMALKEEGYRVILVNNNPATIMTDEAFADEIYFEPLTTDSLKEI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   KPD     L G    +  V+     +L+   +    + +       D+ + + ++ 
Sbjct: 78  IKKEKPDGLLANLGGQTALNLAVELEKAEVLKANGVKLLGTSVDTIEKGEDREKFRSLMK 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
               PV  S +V+     +     I  P +++P       G  +    +     + Q+  
Sbjct: 138 ELNQPVPDSEIVDNEEDALRFAEAIGFPVIVRPAYTLGGKGGGIAPSKEVFLPLIKQALL 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   Q LIE+ + G  E+   VM D+    T I V   +       ++  +        
Sbjct: 198 ASPIHQCLIEKSIAGFKEIEYEVMRDS--KNTCITVCNMENIDPVGVHTGDSIVVAPSQT 255

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +  + Y+ ++  +     A+   G     F  DPLS++ + +E+N 
Sbjct: 256 LTDEDYQMLRTASLTIISALDVVGGCNIQFALDPLSKQYYVIEVNP 301


>gi|313104207|sp|P14882|PCCA_RAT RecName: Full=Propionyl-CoA carboxylase alpha chain, mitochondrial;
           Short=PCCase subunit alpha; AltName:
           Full=Propanoyl-CoA:carbon dioxide ligase subunit alpha;
           Flags: Precursor
          Length = 737

 Score = 68.6 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 74/221 (33%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      L   ++ +      A     DK+ SK +     V   P    
Sbjct: 147 AVHPGYGFLSENKEFAKCLAAEDVTFIGPDTHAIQAMGDKIESKLLAKRAKVNTIPGFDG 206

Query: 112 LVNRFTMDS--QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGD 164
           ++            I  P +IK   GG   G+ +   D+             +SS+   D
Sbjct: 207 VLKDADEAVRIAREIGYPVMIKASAGGGGKGMRIPWDDEETRDGFRFSSQEAASSFG-DD 265

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           +LLIE+++D    +   V+GD   +   +   +        K             +  + 
Sbjct: 266 RLLIEKFIDNPRHIEIQVLGDKHGNALWLNERECSIQRRNQK----VVEEAPSIFLDPET 321

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +   A    +A+        +FL D      ++LE+N 
Sbjct: 322 RRAMGEQAVAWPKAVKYSSAGTVEFLVDSQKN-FYFLEMNT 361


>gi|187735745|ref|YP_001877857.1| carbamoyl-phosphate synthase, large subunit [Akkermansia
           muciniphila ATCC BAA-835]
 gi|187425797|gb|ACD05076.1| carbamoyl-phosphate synthase, large subunit [Akkermansia
           muciniphila ATCC BAA-835]
          Length = 1067

 Score = 68.6 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 46/297 (15%), Positives = 108/297 (36%), Gaps = 40/297 (13%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLV------- 68
           AL + G++   +         D D S  L    L  +   ++       DG++       
Sbjct: 579 ALREMGYETIIVNSNPETVSTDYDSSDKLFFEPLTLEDVLHICE-QEKPDGVIVQFGGQT 637

Query: 69  ----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQH 122
                  LE   +P   +   A  L+ D+     ++   G+    +              
Sbjct: 638 PLNLANALEAHGVPIIGTSPRAIDLAEDREHFSALLKELGLKQAEAGTATNVEDAAAIAA 697

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGV 181
            I  P +++P       G+I++ +++ +   + ++   +    +LI+++++  +E+   V
Sbjct: 698 RIGYPVLLRPSFVLGGRGMIIVYEEKELRRYMNEAVEASEERPVLIDRFLENAVEIDVDV 757

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241
           + D    V    +   +       +S  +++ +    I + ++KE+ R +      +   
Sbjct: 758 IADRERAVIGAIMQHVEPAGI---HSGDSASMIPAMGISMKMHKEITRASKELASKLNVC 814

Query: 242 GISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSI---FPEMAAY--AGYSFREL 288
           G+    F       +++ +E+N       P     SI     ++AA   AG +  EL
Sbjct: 815 GLMNIQFAV--KDEQLYVIEVNPRASRTVP-FVSKSIGKPLAKLAAQVMAGKTLAEL 868



 Score = 64.8 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 48/279 (17%), Positives = 99/279 (35%), Gaps = 36/279 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D +              V  ++   KPD    
Sbjct: 29  SGTQACKALREEGYEVVLVNSNPATIMTDPETAPRTYIEPITPEFVEKIIIREKPDALLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G    +  ++     +LE  ++    +   A     D+   K+ +   G+ V  S +
Sbjct: 89  TLGGQTALNCAMELHRSGVLEREKVRMIGANANAIDRGEDRNLFKEAMLRIGLDVPRSGI 148

Query: 113 VNRFTMD---SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            +        +  + + P +++P      +G  V            +    +   ++LIE
Sbjct: 149 AHTMEEARRVAGDIGTFPLIVRPAFTLGGMGGGVAYNKTEFEEICARGLDLSPVSEILIE 208

Query: 170 QYVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKE 226
           + + G  E    VM D + + V   ++   D           +S  V P + +    Y+ 
Sbjct: 209 ESLIGWKEFEMEVMRDRADNCVVICSIENIDPMGVHT----GDSITVAPIQTLTDREYQA 264

Query: 227 VQRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           ++  +F   + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 MRDASFAVIREIGVETGGSNIQFAINPANGRMIVIEMNP 303


>gi|160945005|ref|ZP_02092231.1| hypothetical protein FAEPRAM212_02520 [Faecalibacterium prausnitzii
           M21/2]
 gi|158442736|gb|EDP19741.1| hypothetical protein FAEPRAM212_02520 [Faecalibacterium prausnitzii
           M21/2]
          Length = 423

 Score = 68.6 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 33/192 (17%), Positives = 67/192 (34%), Gaps = 20/192 (10%)

Query: 93  KMRSKQVVSSCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150
           K + K+     G+      +V+           +  P V+KP  G  +     +  D+ +
Sbjct: 115 KSKMKEYYQKAGIATARYHMVDDLAGCKAFVAQVGYPVVVKPDNGVGASDTHRLSTDKEL 174

Query: 151 PLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLN 210
              L      +     ++E++V     +   + DA  +    A   S     ++  +  N
Sbjct: 175 EEFLAYKEKEHPDVAYIMEEFVRAEVNSYDAIIDAHGNPIFEAGNVSPVSIMDIVNNDDN 234

Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR---SDFLFDPLS-------RKVFWL 260
           S + +   +P D     +  A  +    G +  SR    +F              ++  L
Sbjct: 235 SIYYIIKDLPEDTRAAGRA-AVKSF---GVK--SRFVHFEFFRMTEDQSSMGKKGQIVAL 288

Query: 261 EINVQP--GMTP 270
           E+N++P  G TP
Sbjct: 289 EVNMRPCGGFTP 300


>gi|119468159|ref|ZP_01611285.1| acetyl-CoA carboxylase [Alteromonadales bacterium TW-7]
 gi|119448152|gb|EAW29416.1| acetyl-CoA carboxylase [Alteromonadales bacterium TW-7]
          Length = 446

 Score = 68.6 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 39/222 (17%), Positives = 76/222 (34%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+      +E     +         L  DK+ +   +   GVP  P    
Sbjct: 77  AIHPGYGFLAENADFADQVEQSGFVFIGPKGDTIRLMGDKVSAIAAMRKAGVPCVPGSDG 136

Query: 111 --ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
                N   M     I  P +IK   GG   G+ V++ +  +   +     ++  +    
Sbjct: 137 PVTDDNERNMQIAKRIGYPVIIKAAGGGGGRGMRVVRNESELVNSISLTQQEAKQFFGNG 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+Y++    +   V+ D   +   +            K          PA  I  +
Sbjct: 197 MVYMEKYLENPRHIEVQVLADGQGNAVHLGERDCSMQRRHQK-----VVEEAPAPGITAE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             K +      A   IG RG    +FL+   + + +++E+N 
Sbjct: 252 TRKFIGERCTRACIEIGYRGAGTFEFLY--ENGEFYFIEMNT 291


>gi|89893144|ref|YP_516631.1| carbamoyl phosphate synthase large subunit [Desulfitobacterium
           hafniense Y51]
 gi|89332592|dbj|BAE82187.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 1075

 Score = 68.6 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 51/288 (17%), Positives = 111/288 (38%), Gaps = 37/288 (12%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQIDVDRS---------------------VGLV 45
           G ++E + S   G     AL++ G++V  ++ + +                     +  +
Sbjct: 21  GQAAEFDYS---GTQACKALKNLGYEVVLVNSNPATIMTDAGTADATYIEPLNVQRITEI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   +PD     L G  G +   +     +L+   +      + A     D++  K+ + 
Sbjct: 78  IEKERPDALLPNLGGQSGLNLSSELAKAGVLDHYGVKVIGVQLDAIERGEDRIAFKETME 137

Query: 102 SCGVPVC---PSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS 158
             G+ +    P+  V      +Q  +  P VI+P       G  ++   + +   + +  
Sbjct: 138 RLGIDMPKSSPAYTVEEAEKIAQE-LGYPVVIRPAYTLGGTGGGLVYNVEELKTIVNRGI 196

Query: 159 SWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
           S +   Q+L+E+ V G  EL   V+ D+   +  +   ++          + +S    P 
Sbjct: 197 SASMIGQVLVEESVLGWEELELEVVRDSKNQMITVCFIENIDAIGVH---TGDSFCSAPM 253

Query: 218 -KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             I  ++ + +Q+ A+   +AI   G +   F  DP + +V  +EIN 
Sbjct: 254 LTISQELQERLQKYAYSIVEAIEVIGGTNVQFAHDPKTDRVVIIEINP 301



 Score = 48.2 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/200 (11%), Positives = 74/200 (37%), Gaps = 8/200 (4%)

Query: 68  VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLIS 125
           + A L+   +    +       + D+ + ++++    +P+  + + +     + +  +I 
Sbjct: 642 IAAQLQEAGVRILGTVPEVIDQAEDRDQFRKMMEKLAIPMPQAGMASTLEEALAAAEMIG 701

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGD 184
            P +++P       G+ ++  ++ +   +  +        +LI+++++  IE     + D
Sbjct: 702 YPVMVRPSYVLGGRGMEIVFDEEQLREYVAAAVDITPERPILIDKFLENAIEAEADAVSD 761

Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244
            +       +   +       +S  ++  + P  I     + +        Q +   G+ 
Sbjct: 762 GTHAFVPAVMEHIELAGI---HSGDSACVIPPLTIADRHLRTIIDYTQRIAQELHVVGL- 817

Query: 245 RSDFLFDPLSRKVFWLEINV 264
             +  +     KV+ LE N 
Sbjct: 818 -MNIQYAIAEDKVYVLEANP 836


>gi|15677690|ref|NP_274851.1| carbamoyl phosphate synthase large subunit [Neisseria meningitidis
           MC58]
 gi|22095532|sp|Q9JXW8|CARB_NEIMB RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|7227111|gb|AAF42189.1| carbamoyl-phosphate synthase, large subunit [Neisseria meningitidis
           MC58]
 gi|316985462|gb|EFV64409.1| carbamoyl-phosphate synthase large chain [Neisseria meningitidis
           H44/76]
 gi|325139516|gb|EGC62056.1| carbamoyl-phosphate synthase, large subunit [Neisseria meningitidis
           CU385]
 gi|325200914|gb|ADY96369.1| carbamoyl-phosphate synthase, large subunit [Neisseria meningitidis
           H44/76]
          Length = 1071

 Score = 68.6 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 29/192 (15%), Positives = 72/192 (37%), Gaps = 8/192 (4%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYVIKPL 133
            +    +   +   + D+ R ++V++  G+   P+ + +           I  P V++P 
Sbjct: 652 GVNIIGTSADSIDAAEDRERFQKVLNDLGLRQPPNRIAHNEEEALVKAEEIGYPLVVRPS 711

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEI 192
                  + V+   + +   + ++   +    +L++ ++ + IE+    + D    V   
Sbjct: 712 YVLGGRAMQVVHSAEELQKYMREAVQVSEDSPVLLDFFLNNAIEVDVDCVSDGKDVVIGG 771

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            +   +       +S  +   + P  +  +I  E++R       A+G  G+    F    
Sbjct: 772 IMQHVEQAGI---HSGDSGCSLPPYSLSEEIQDEIRRQTKAMAYALGVVGLMNVQFAV-- 826

Query: 253 LSRKVFWLEINV 264
               VF LE+N 
Sbjct: 827 QDGVVFVLEVNP 838



 Score = 65.9 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 50/278 (17%), Positives = 101/278 (36%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +              DV        ++V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYKVILVNSNPATIMTDPEMADVTYIEPIMWQTVEKIIAKERPDAILP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      +L    +    +   A   + D+ R K+ +   G+    S +
Sbjct: 89  TMGGQTALNCALDLARNGVLAKYNVELIGATEDAIDKAEDRGRFKEAMEKIGLSCPKSFV 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     + +Q  +  P +I+P       G  +            +    +   +LLIEQ
Sbjct: 149 CHTMNEALAAQEQVGFPTLIRPSFTMGGSGGGIAYNKDEFLAICERGFDASPTHELLIEQ 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            V G  E    V+ D + +   I   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SVLGWKEYEMEVVRDKNDNCIIICSIEN----FDPMGVHTGDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RNASLAVLREIGVDTGGSNVQFAVNPANGEMIVIEMNP 302


>gi|150391116|ref|YP_001321165.1| carbamoyl-phosphate synthase, large subunit [Alkaliphilus
           metalliredigens QYMF]
 gi|149950978|gb|ABR49506.1| carbamoyl-phosphate synthase, large subunit [Alkaliphilus
           metalliredigens QYMF]
          Length = 1075

 Score = 68.6 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 30/196 (15%), Positives = 78/196 (39%), Gaps = 9/196 (4%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           L    I    +      L+ D+ +  +++    +P    ++V+  +   ++  ++  P V
Sbjct: 646 LHEAGIKILGTPPSGIDLAEDREKFSKLLVELNIPQSKGVMVSDIKEVEEAAKVLGFPLV 705

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           ++P        + +++ ++ +       + +N  + +L++QY+ G E+    + D     
Sbjct: 706 VRPSYVIGGQSMEIVRDEEELLYYANHLTDFNKYNAILMDQYILGKEVEVDGISDGK--- 762

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
            EI +P    +       S +S  V P + +   + K++         A+G  G+    +
Sbjct: 763 -EILIPAIMEHIERAGVHSGDSMSVYPVQSLSEKVVKDIVDYTQKIAMALGVVGLINIQY 821

Query: 249 LFDPLSRKVFWLEINV 264
           +      +V  +E N 
Sbjct: 822 VV--KDEQVMVIEANP 835



 Score = 61.3 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 46/291 (15%), Positives = 106/291 (36%), Gaps = 43/291 (14%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQID---------------------VDRSVGLV 45
           G ++E + +   G     +L + G +V  ++                       R++ L+
Sbjct: 21  GQAAEFDYA---GTQACKSLREEGVEVVLVNSNPATIMTDENIADHVYIEPLNTRAIELI 77

Query: 46  LAHLKPDLAFNVLHGNFG--------EDGLVQAILELLEIPYTHSGILASALSMDKMRSK 97
           +   +P      L G  G        E+G++Q       +    + +     + D+   K
Sbjct: 78  IKAERPQGILPTLGGQTGLNLAVALYEEGILQKY----GVELLGTSVDTVKRAEDRQLFK 133

Query: 98  QVVSSCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
           + +   G  V  S +V +    M     +  P +++P       G  +    + +   ++
Sbjct: 134 ETMEKLGHTVPKSAIVAKVEEAMAFGEEVGYPLIVRPAYTLGGTGGGIALNQEELRGIVV 193

Query: 156 QSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHV 214
           +    +  +Q+LIEQ V +  E+   VM D + +   I     + +   +   + +S  V
Sbjct: 194 RGLRLSMINQVLIEQSVANWKEIEYEVMRDRNDNCITIC--NMENFD-PVGIHTGDSIVV 250

Query: 215 LPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            P++ +  + Y+ ++  +    + +   G     F   P S     +E+N 
Sbjct: 251 APSQTLRDEEYQMLRSASIDIIRELKVEGGCNIQFALHPESLDYVVIEVNP 301


>gi|313159312|gb|EFR58677.1| putative phosphoribosylglycinamide formyltransferase 2 [Alistipes
           sp. HGB5]
          Length = 391

 Score = 68.6 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 48/253 (18%), Positives = 88/253 (34%), Gaps = 37/253 (14%)

Query: 33  VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
              +D D ++   +   +PD+    +     E         L E       ++ SA +++
Sbjct: 48  FHMLDGD-ALAAAVGKHRPDIIVPEIEAIRTE--------RLYEFEKAGVQVVPSARAVN 98

Query: 93  -----KMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVIK 145
                K          G+          +     +   I  P V+KPL   S  G  ++K
Sbjct: 99  FTMNRKAIRDLAAKELGLKTARYFYATSYDELKQAAAKIGYPCVVKPLMSSSGKGQSLVK 158

Query: 146 KDQSIPLDLLQSSSWNHGD--QLLIEQYVDGIE----LTCGVMGDASLDVTEIA-VPKSD 198
             + +          + GD  +L+IE+++        LT       +L    I  V K  
Sbjct: 159 GPEELEHAWRYGCEGSRGDIRELIIEEFIRFDSEITLLTVTQKNGPTLFCPPIGHVQKGG 218

Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
            Y       S  S H+ P  +      E QR+A    +A+   G+   +F     +  V+
Sbjct: 219 DYR-----ESFQSPHIAPEHL-----AEAQRMAAAVTEALTGAGLWGVEFFLSHENG-VY 267

Query: 259 WLEINVQP---GM 268
           + E++ +P   GM
Sbjct: 268 FSELSPRPHDTGM 280


>gi|310780363|ref|YP_003968695.1| carbamoyl-phosphate synthase large subunit [Ilyobacter polytropus
           DSM 2926]
 gi|309749686|gb|ADO84347.1| carbamoyl-phosphate synthase large subunit [Ilyobacter polytropus
           DSM 2926]
          Length = 1061

 Score = 68.6 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 46/262 (17%), Positives = 94/262 (35%), Gaps = 28/262 (10%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ------ 69
           A+++AG++   I         D D S  L    L  D   NV+        +VQ      
Sbjct: 578 AIKEAGYQSIIINNNPETVSTDFDTSDKLYFESLYIDDVLNVIREENPYGVIVQFGGQTS 637

Query: 70  ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHL 123
                 LE   +    +   +  L+ D+ + +  +   G+             +  +   
Sbjct: 638 INLAKRLEESGVNILGTKYESIDLAEDRDKFRNFLEGLGIESPEGYAAKNLEESYAAAEK 697

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + V+   +S+   +  +   +    +LI++YV G E+    + 
Sbjct: 698 IGYPVVVRPSYVIGGRAMRVVHNKESLTEYMTHAIDMSKETTILIDKYVYGTEIEVDAIC 757

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRG 242
           D      +I +P    +  +    S +S    P   +  ++  E+          I   G
Sbjct: 758 DGE----DILIPGIMEHIEKTGVHSGDSITSYPTISLSDEVIAELVESTRKIAVNIKTLG 813

Query: 243 ISRSDFLFDPLSRKVFWLEINV 264
           I    ++FD   +K++ +E+N 
Sbjct: 814 IINIQYVFD--GKKLYIIEVNP 833



 Score = 52.4 bits (125), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 45/277 (16%), Positives = 97/277 (35%), Gaps = 34/277 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFN-------------------VL 58
           SG     A+++ G ++  ++ + +  +   ++  D  +                    +L
Sbjct: 27  SGTQACKAIKEEGIEIVLLNSNPATIMTDNNI-ADKVYIEPLTVEVAEEIIKKEKPQGIL 85

Query: 59  HGNFGEDGLV-------QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
            G  G+  L        Q IL+   +        A   + D+   K+++   G PV  S 
Sbjct: 86  AGFGGQTALNLAMELEGQGILDKYNVKLFGINSEAIRRAEDREEFKELLEKLGEPVAISG 145

Query: 112 LVNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
           + +              P +++P       G  +    +       +    +   QLL+E
Sbjct: 146 IASTMDECVKFAETNGFPIIVRPAYTMGGTGGGIADNMEDFKDICSKGLIMSPIKQLLLE 205

Query: 170 QYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
           Q V G  E+   VM D+  +   I V   + +   +   + +S  + P++ +    Y+ +
Sbjct: 206 QSVAGWKEIEYEVMRDSKGN--CITVCNMENFD-PVGIHTGDSIVIAPSQTLTNYEYQML 262

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           ++ +      +   G     F  DP S     +E+N 
Sbjct: 263 RQSSLKIIDELKIEGGCNVQFALDPHSHNYIVIEVNP 299


>gi|295102543|emb|CBL00088.1| Phosphoribosylamine-glycine ligase [Faecalibacterium prausnitzii
           L2-6]
          Length = 458

 Score = 68.6 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 33/192 (17%), Positives = 72/192 (37%), Gaps = 20/192 (10%)

Query: 93  KMRSKQVVSSCGVPVCPSILVNR--FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150
           K + K+     G+      +V+           +  P V+KP  G  +     +  D+ +
Sbjct: 115 KSKMKEYYRKAGIATARYHMVDDLNGCRAFIKQVGYPVVVKPDNGVGASDTHKLSNDEEL 174

Query: 151 PLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLN 210
              L + +  +     ++E++V     +   + DAS +    A   S     ++   + N
Sbjct: 175 KTFLARKAEDHPDVSYIMEEFVRAEVNSYDAIIDASGNPIFEAGNVSPVSIMDIVNDNDN 234

Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR---SDFLFDPLS-------RKVFWL 260
           S + +   +P D     + +     ++ G +  SR    +F     +        ++  L
Sbjct: 235 SIYYIIKDLPEDTRAAGRAVV----KSFGVK--SRFVHFEFFRMTENQASMGEKGQIVAL 288

Query: 261 EINVQP--GMTP 270
           E+N++P  G TP
Sbjct: 289 EVNMRPCGGFTP 300


>gi|290474687|ref|YP_003467567.1| hypothetical protein XBJ1_1661 [Xenorhabdus bovienii SS-2004]
 gi|289174000|emb|CBJ80787.1| conserved hypothetical protein [Xenorhabdus bovienii SS-2004]
          Length = 457

 Score = 68.6 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 37/214 (17%), Positives = 72/214 (33%), Gaps = 32/214 (14%)

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--QHLISPPYVIKPLKGGS 137
           +HS   A A+  +K   +Q++    +      L N     S   ++I  P + KP  G  
Sbjct: 111 SHSSSNAIAVCNNKYLMRQILKKHDIRSVRYALCNNEEELSYQANMIGYPLIAKPPFGAC 170

Query: 138 SLGIIVIKKDQSIPLDLLQSSS-WNH-------------------------GDQLLIEQY 171
           S+ I        + +     ++ + H                         G  LL+E+Y
Sbjct: 171 SVFIKKCNNWAELQVHYQTFTAHYEHSNYTDFMGNQQEYVTPKGEKYISIPGKSLLLEEY 230

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           +DGIE T   + +    +  + + +    + +      N     P        ++++  A
Sbjct: 231 IDGIEGTIECVINQH-TIYPVLINEKLILTEKSNTVLENLLITPPVSFSPSEQEQIKNYA 289

Query: 232 FLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
                A+G    I+  +F           +EIN 
Sbjct: 290 IACLNAVGLNNAIAHLEFRMTSEG--PVIIEINP 321


>gi|154685968|ref|YP_001421129.1| carbamoyl phosphate synthase large subunit [Bacillus
           amyloliquefaciens FZB42]
 gi|154351819|gb|ABS73898.1| PyrAB [Bacillus amyloliquefaciens FZB42]
          Length = 1071

 Score = 68.6 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 47/298 (15%), Positives = 108/298 (36%), Gaps = 38/298 (12%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL++ G++V  ++ +                       +  ++   +PD     L G  G
Sbjct: 36  ALKEEGYEVILVNSNPATIMTDTEMADRVYIEPLTPEFLTRIIRKERPDAILPTLGGQTG 95

Query: 64  EDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFT 117
            +  V+     +LE   +    + + A   + D+   + +++    PV  S ++   +  
Sbjct: 96  LNLAVELSELGVLEECGVEVLGTKLSAIQQAEDRDLFRTLMNELNEPVPESEIIRTLQEA 155

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IE 176
            +    I  P +++P       G  +   +  +   +      +   Q L+E+ + G  E
Sbjct: 156 EEFVGRIGFPVIVRPAYTLGGTGGGICSDEAELKEIVENGLKLSPVHQCLLEKSIAGYKE 215

Query: 177 LTCGVMGD-ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLA 234
           +   VM D     +    +   D           +S  V P++ +    Y+ ++ ++   
Sbjct: 216 IEYEVMRDSRDHAIVVCNMENIDPVGIHT----GDSIVVAPSQTLSDREYQLLRNVSLKL 271

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
            +A+G  G        DP S + + +E+N  P ++  S     +   GY   +L   +
Sbjct: 272 IRALGIEGGCNVQLALDPDSFQYYIIEVN--PRVSRSS--ALASKATGYPIAKLAAKI 325



 Score = 68.6 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 30/214 (14%), Positives = 79/214 (36%), Gaps = 14/214 (6%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC--PSILVNRFTMDSQHLISPPYV 129
           L    +    + +     + D+ + +Q + +  VP     + +     +     I  P +
Sbjct: 646 LSARGVKILGTSLEDLDRAEDRDKFEQALEALNVPQPLGKTAVSVNEAVKIAASIGYPVL 705

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           ++P        + ++  ++ +   +  +   N    +LI++Y+ G E+    + D    V
Sbjct: 706 VRPSYVLGGRAMEIVYHEEELLHYMKNAVKINPQHPVLIDRYLTGKEIEVDAVSDGETVV 765

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               +   +           +S  V P + +  DI K++++      + +   G+    F
Sbjct: 766 IPGIMEHIERAGVHS----GDSIAVYPPQSLSEDIKKKIEQYTVALAKGLNIIGLLNIQF 821

Query: 249 LFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277
           +      +V+ LE+N       P ++ ++  P  
Sbjct: 822 VLSQ--GEVYVLEVNPRSSRTVPFLSKITKIPMA 853


>gi|294634969|ref|ZP_06713486.1| carbamoyl-phosphate synthase, large subunit [Edwardsiella tarda
           ATCC 23685]
 gi|291091568|gb|EFE24129.1| carbamoyl-phosphate synthase, large subunit [Edwardsiella tarda
           ATCC 23685]
          Length = 1073

 Score = 68.6 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 45/278 (16%), Positives = 97/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D +              V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +    Q +L    +    +   A   + D+ R  Q +   G+    S +
Sbjct: 89  TMGGQTALNCALELERQGVLAEFGVTMIGATADAIDKAEDRRRFDQAMKKIGLDTARSGI 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     +     +  P +I+P       G  +    +       +    +  ++LLI++
Sbjct: 149 AHSMEEALAVAEQVGFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTNELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + +   I   ++ D           +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIICSIENLDPMGIHT----GDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RNASMAVLREIGVETGGSNVQFAVNPKNGRLIVIEMNP 302



 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 34/197 (17%), Positives = 76/197 (38%), Gaps = 10/197 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ--HLISPPYV 129
           LE   +P   +   A   + D+ R +Q V+  G+    +  V       +    I  P V
Sbjct: 654 LEAAGVPVIGTSPDAIDRAEDRERFQQAVNRLGLKQPANATVTAIEQAVEKGAQIGYPLV 713

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  +  +      + S ++   +L++ ++ D +E+    + D    
Sbjct: 714 VRPSYVLGGRAMEIVYDESDLRRYFQTAVSVSNDAPVLLDHFLDDAVEVDVDAICDGEQV 773

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           +    +   +    +    S +S   LPA  +  +I  E++R A      +  RG+    
Sbjct: 774 LIGGIMEHIE----QAGVHSGDSACSLPAYTLSAEIQDELRRQAEKLALELCVRGLMNVQ 829

Query: 248 FLFDPLSRKVFWLEINV 264
           F       +V+ +E+N 
Sbjct: 830 FAV--KDNEVYLIEVNP 844


>gi|260596463|ref|YP_003209034.1| carbamoyl phosphate synthase large subunit [Cronobacter turicensis
           z3032]
 gi|260215640|emb|CBA27925.1| Carbamoyl-phosphate synthase large chain [Cronobacter turicensis
           z3032]
          Length = 1074

 Score = 68.6 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 42/278 (15%), Positives = 96/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D +              V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +    Q +L    +    +   A   + D+ R    +   G+    S +
Sbjct: 89  TMGGQTALNCALELERQGVLAEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLDTARSGI 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     +     +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHNMEEALAVAADVGYPCIIRPSFTMGGTGGGIAYNREEFEEICARGLDLSPTKELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + +   +   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIEN----FDAMGIHTGDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RNASMAVLREIGVETGGSNVQFAVNPKNGRLIVIEMNP 302



 Score = 60.9 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 75/197 (38%), Gaps = 10/197 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYV 129
           LE   +P   +   A   + D+ R +Q V    +    +  V    M  +    I  P V
Sbjct: 654 LEAAGVPVIGTSPDAIDRAEDRERFQQAVDRLKLKQPANATVTAIEMAVEKAKEIGYPLV 713

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  +  +      + S ++   +L+++++ D +E+    + D  + 
Sbjct: 714 VRPSYVLGGRAMEIVYDEVDLRRYFQTAVSVSNDAPVLLDRFLDDAVEVDVDAICDGEMV 773

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           +    +   +    +    S +S   LPA  +  +I   +++        +  RG+    
Sbjct: 774 LIGGIMEHIE----QAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRGLMNVQ 829

Query: 248 FLFDPLSRKVFWLEINV 264
           F       +V+ +E+N 
Sbjct: 830 FAV--KDNEVYLIEVNP 844


>gi|270263912|ref|ZP_06192180.1| carbamoyl-phosphate synthase large chain [Serratia odorifera 4Rx13]
 gi|270042105|gb|EFA15201.1| carbamoyl-phosphate synthase large chain [Serratia odorifera 4Rx13]
          Length = 1074

 Score = 68.6 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 49/319 (15%), Positives = 108/319 (33%), Gaps = 52/319 (16%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D +              V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +    Q +L    +    +   A   + D+ R    +   G+    S +
Sbjct: 89  TMGGQTALNCALELERQGVLAEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLDTARSGI 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     +     +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHNMEEALAVAADVGFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTKELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + +   +   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIEN----FDAMGIHTGDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV-----------QPGMTPVSIFP 275
           +  +    + IG   G S   F  +P + ++  +E+N              G        
Sbjct: 265 RNASMAVLREIGVETGGSNVQFSVNPKNGRLIVIEMNPRVSRSSALASKATGF----PIA 320

Query: 276 EMAA--YAGYSFRELLLWM 292
           ++AA    GY+  EL+  +
Sbjct: 321 KIAAKLAVGYTLDELMNDI 339



 Score = 60.5 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 76/197 (38%), Gaps = 10/197 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           LE   +P   +   A   + D+ R +Q V   G+    +  V      ++    I  P V
Sbjct: 654 LEAAGVPIIGTSPDAIDRAEDRERFQQAVHRLGLKQPANATVATIEQAVEKAAGIGYPLV 713

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  +  +      + S ++   +L+++++ D +E+    + D    
Sbjct: 714 VRPSYVLGGRAMEIVYDEIDLRRYFQNAVSVSNDAPVLLDRFLDDAVEVDVDAICDGERV 773

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           +    +   +    +    S +S   LPA  +  +I   +++        +  RG+    
Sbjct: 774 LIGGIMEHIE----QAGVHSGDSACSLPAYTLSKEIQDVMRQQVEKLAFELQVRGLMNVQ 829

Query: 248 FLFDPLSRKVFWLEINV 264
           F     + +V+ +E+N 
Sbjct: 830 FAV--KNNEVYLIEVNP 844


>gi|261416446|ref|YP_003250129.1| Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain protein
           [Fibrobacter succinogenes subsp. succinogenes S85]
 gi|261372902|gb|ACX75647.1| Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain protein
           [Fibrobacter succinogenes subsp. succinogenes S85]
 gi|302327649|gb|ADL26850.1| carbamoyl-phosphate-synthetase family protein [Fibrobacter
           succinogenes subsp. succinogenes S85]
          Length = 407

 Score = 68.6 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 32/240 (13%), Positives = 79/240 (32%), Gaps = 35/240 (14%)

Query: 71  ILELLEIPYTHSGILASALS-MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ-------- 121
           + E L +P       A++L    K + + + +  G+P   +I +   + D          
Sbjct: 89  VCEKLGLP--GHDSYATSLELHHKDKYRALATKLGIPTPRAITIKVASTDFAGETEADFD 146

Query: 122 ---HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                ++ P ++KP+      GI      +        + S    D +++E++V G    
Sbjct: 147 AAIAQLTFPIIVKPVDLTGGKGIHRAANIEEARAAYKDACSRTRQDHIVVEEFVQGTNHG 206

Query: 179 -CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
              ++ +        A   ++ Y Y  KY    +    P+        +++  +    + 
Sbjct: 207 FSAMLVNGK---VAFAFADNEQY-YLNKYMVSGAN--TPSTTSAAGLAKLRDYSERIARE 260

Query: 238 IGCRGISRSDFLFD-----PLSRKVFWLEINVQPGMTPVSIFPEMAA-YAGYSFRELLLW 291
           +        D +               +EI  +P   P  ++ +      G  + + ++ 
Sbjct: 261 LHL-----VDGILHIQYIERADGTPVIIEICRRP---PGDLYIKFVKYATGIDYPKFIVM 312


>gi|288941393|ref|YP_003443633.1| acetyl-CoA carboxylase, biotin carboxylase [Allochromatium vinosum
           DSM 180]
 gi|288896765|gb|ADC62601.1| acetyl-CoA carboxylase, biotin carboxylase [Allochromatium vinosum
           DSM 180]
          Length = 472

 Score = 68.6 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 76/221 (34%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+  +        I +        A   DK  ++Q +   GVPV P    
Sbjct: 76  AVHPGYGFLSENPELALTCARRGITFIGPNAEVIARMGDKTAARQAMQKAGVPVTPGSPG 135

Query: 114 NRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGD 164
           N  ++D        I  P ++K   GG   GI       ++  +        + ++   +
Sbjct: 136 NLNSLDEALACAAEIGYPVMLKATSGGGGRGIRRCDDPAALRHNYERVISEATKAFGRAE 195

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDI 223
             L +  V+   +   V+ D       +            K        + P  ++    
Sbjct: 196 VFLEKCVVNPKHIEVQVLADHHGHCIHLFERDCSIQRRNQKL-----IEIAPSPQLDDAQ 250

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + V  LA LA +++G       +FL D    + +++E+N 
Sbjct: 251 RQYVGGLAVLAARSVGYTNAGTVEFLLD-SDGRFYFMEMNT 290


>gi|189485190|ref|YP_001956131.1| biotin carboxylase [uncultured Termite group 1 bacterium phylotype
           Rs-D17]
 gi|170287149|dbj|BAG13670.1| biotin carboxylase [uncultured Termite group 1 bacterium phylotype
           Rs-D17]
          Length = 449

 Score = 68.6 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 33/221 (14%), Positives = 83/221 (37%), Gaps = 18/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+     + E   + +      +     +K+ + +++   G+PV P    
Sbjct: 77  AIHPGYGFLAENTYFAEVCEACRLNFIGPSKESIEQMGNKITAIKLMKKSGIPVIPGSDG 136

Query: 112 ---LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSWNHGD 164
              + +    D+   I  P +IK   GG   G+ ++   +++     +   ++ +     
Sbjct: 137 PVNVDDPKIFDTAQKIGYPVIIKATAGGGGKGMRIVTSKENLKNSIVMAQTEAKAAFGNP 196

Query: 165 QLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           ++ +E+Y++    +   ++GD       +            K             I   +
Sbjct: 197 EIYMEKYIEEPHHIEFQILGDKYGKTAYLPERDCSIQRRHQK----LIEESPSPLISDTL 252

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            K++ R+A  A +A+    +   +FL D      +++E+N 
Sbjct: 253 RKKMGRVARNAAEAVKYVTVGTVEFLVDKK-GYFYFIEMNT 292


>gi|157368959|ref|YP_001476948.1| carbamoyl phosphate synthase large subunit [Serratia proteamaculans
           568]
 gi|157320723|gb|ABV39820.1| carbamoyl-phosphate synthase, large subunit [Serratia
           proteamaculans 568]
          Length = 1074

 Score = 68.6 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 42/278 (15%), Positives = 97/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D +            + V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWKVVRKIIEKERPDAVLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +    Q +L    +    +   A   + D+ R    +   G+    S +
Sbjct: 89  TMGGQTALNCALELERQGVLAEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLDTARSGI 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     +     +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHNMEEALAVAADVGFPCIIRPSFTMGGSGGGIAYNREEFEEICERGLDLSPTKELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + +   +   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIEN----FDAMGIHTGDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RNASMAVLREIGVETGGSNVQFSVNPKTGRLIVIEMNP 302



 Score = 61.7 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 32/197 (16%), Positives = 76/197 (38%), Gaps = 10/197 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           LE   +P   +   A   + D+ R +Q V   G+    +  V      ++    I  P V
Sbjct: 654 LEAAGVPIIGTSPDAIDRAEDRERFQQAVQRLGLKQPANATVATIEQAVEKAAGIGYPLV 713

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  D  +      + S ++   +L+++++ D +E+    + D    
Sbjct: 714 VRPSYVLGGRAMEIVYDDIDLRRYFQNAVSVSNDAPVLLDRFLDDAVEVDVDAICDGERV 773

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           +    +   +    +    S +S   LPA  +  +I   +++        +  RG+    
Sbjct: 774 LIGGIMEHIE----QAGVHSGDSACSLPAYTLSKEIQDVMRQQVEKLAFELQVRGLMNVQ 829

Query: 248 FLFDPLSRKVFWLEINV 264
           F     + +V+ +E+N 
Sbjct: 830 FAV--KNNEVYLIEVNP 844


>gi|134281184|ref|ZP_01767893.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia
           pseudomallei 305]
 gi|134247490|gb|EBA47575.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia
           pseudomallei 305]
          Length = 404

 Score = 68.6 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 47/277 (16%), Positives = 91/277 (32%), Gaps = 38/277 (13%)

Query: 19  GKACASALEDAGFKVSQID----------------VDRSVGLVLAHL----KPDLAFNVL 58
           GK    AL+  G +V  +D                +D +    L  L    +P L    +
Sbjct: 27  GKEVIIALQRLGVEVIAVDRYPNAPGHQVAHRAHVIDMTDPDALRALVDAERPHLVVPEI 86

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKM-RSKQVVSSCGVPVCPSILVNRFT 117
                 D L  A +E   +        A+ L+M++    +      G+P  P        
Sbjct: 87  EAI-ATDAL--AAIEAAGVCEVIPTARATQLTMNREGIRRLAAEELGLPTSPYAFAQSSD 143

Query: 118 MDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH--GDQLLIEQYV- 172
             +  +  I  P V+KP+   S  G  V++ +  I      + +       ++++E ++ 
Sbjct: 144 EFAAAVARIGFPCVVKPVMSSSGKGQSVVRSEADIEPAWRYAMAGGRVNHGRVIVEGFIR 203

Query: 173 ---DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
              +  +LT   +  AS                   Y         P  +     +  + 
Sbjct: 204 FDYEITQLTVRAIDPASGQTRTSFCAPIGHLQVAGDY----VESWQPQPMSAKALERSRD 259

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
           +A     A+G RGI   +         V++ E++ +P
Sbjct: 260 IAHRVTSALGGRGIFGVELFVR--GDDVWFSEVSPRP 294


>gi|109896421|ref|YP_659676.1| acetyl-CoA carboxylase, biotin carboxylase [Pseudoalteromonas
           atlantica T6c]
 gi|109698702|gb|ABG38622.1| acetyl-CoA carboxylase carboxyltransferase subunit alpha
           [Pseudoalteromonas atlantica T6c]
          Length = 449

 Score = 68.6 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 81/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         L  DK+ + + + + GVP  P    
Sbjct: 77  AIHPGYGFLAENADFAEAVERSGFIFIGPKAETINLMGDKVSAIKSMKAAGVPCVPGSDG 136

Query: 112 LVNRFTMDSQHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GD 164
            +N     ++ L   I  P ++K   GG   G+ V++ ++ +   +  +          D
Sbjct: 137 PLNDDEARNKKLAQGIGYPIIVKAAGGGGGRGMRVVRSEEELIGAIAATKGEAAAAFNND 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E++++    +   ++ D       +            K          PA  I  +
Sbjct: 197 VVYMEKFLENPRHVEIQILADGQGSAIHLGERDCSMQRRHQK-----VVEEAPAPGITEE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +  ++      A   IG RG    +FLF   + + +++E+N 
Sbjct: 252 MRAKIGARCCQACIDIGYRGAGTFEFLF--ENGEFYFIEMNT 291


>gi|110288964|gb|AAP53321.2| acetyl-coenzyme A carboxylase ACC1A, putative, expressed [Oryza
           sativa Japonica Group]
          Length = 2229

 Score = 68.6 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 40/230 (17%), Positives = 76/230 (33%), Gaps = 29/230 (12%)

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--------- 110
           G+  E+  +   L+   I +      A A   DK+ S  +  + GVP  P          
Sbjct: 131 GHASENPELPDALKEKGIIFLGPPSAAMAALGDKIGSSLIAQAAGVPTLPWSGSHVKIPP 190

Query: 111 ---------------ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
                          +      + S  ++  P +IK   GG   GI  +  D  +     
Sbjct: 191 ESCNSIPEEMYRSACVSTTEEAVASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFK 250

Query: 156 QSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHV 214
           Q      G  + I +       L   ++ D   +V  +            K        V
Sbjct: 251 QVQGEVPGSPIFIMKVASQSRHLEVQLLCDKHGNVAALHSRDCSVQRRHQKIIEEGPITV 310

Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            P++   ++ +  +RLA   H      G +  ++L+   + + ++LE+N 
Sbjct: 311 APSETVKELEQAARRLAKCVHYV----GAATVEYLYSMETGEYYFLELNP 356


>gi|323490998|ref|ZP_08096192.1| carbamoyl phosphate synthase large subunit [Planococcus donghaensis
           MPA1U2]
 gi|323395354|gb|EGA88206.1| carbamoyl phosphate synthase large subunit [Planococcus donghaensis
           MPA1U2]
          Length = 1031

 Score = 68.6 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 53/303 (17%), Positives = 108/303 (35%), Gaps = 47/303 (15%)

Query: 20  KACASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ- 69
            +  +A +  G++   I         D + +  L    + P+   NVL        ++Q 
Sbjct: 580 HSVMAA-QKLGYEAIMINNNPETVSTDYEVADALYFEPITPEDILNVLDFEGINQVILQF 638

Query: 70  ---------AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--M 118
                    A LE   I    S +       D+ R    + S G+P  P          +
Sbjct: 639 GGQTSLNVAAALESAGITVLGSTVDLLDQMEDRDRFYAFLESIGLPTIPGKTAQNAAEVI 698

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   +  P +++P       G+IV+  +Q +   L Q++       +L++ +V G E+ 
Sbjct: 699 PAARSLRFPVLLRPSYVIGGRGMIVLANEQELTDWLQQTT---MTFPVLVDHFVTGKEVE 755

Query: 179 CGVMGDAS---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
             ++ D     +      V  +  +S        + +   P  +  D  +E+   A    
Sbjct: 756 ADILTDGDNVWVSAIFEHVEGTGVHS------GDSISVTPPVSLSADALQELTETAKHIA 809

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEMAAYA-----GYSF 285
             +   G+    F++   + ++F +EIN       P  + ++  P +  +A     G  F
Sbjct: 810 TNMDYTGLFNIQFVY--ENNQLFVMEINPRASRTAPISSKITDVP-LVQHATALLLGIPF 866

Query: 286 REL 288
            EL
Sbjct: 867 EEL 869



 Score = 54.4 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 47/287 (16%), Positives = 107/287 (37%), Gaps = 35/287 (12%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQIDVD---------------------RSVGLV 45
           G ++E + S   G     AL++ G +V  I+ +                      SV  +
Sbjct: 21  GQAAEFDYS---GTQACVALKEEGVEVILINNNPATIMTDQSISDKVYFEPLTLDSVTAI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   +PD     + G    +  +     +IL    +    + + A   + D+ + + +++
Sbjct: 78  IEKERPDGLLATVGGQTALNLAMALSDSSILTKYGVTLLGTDMKAIKQAEDREQFRSLMN 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G PV  S ++      ++       P +++P       G  + + +++    + Q  S
Sbjct: 138 QLGEPVPDSDIIYSIEGALEFADSAGYPLIVRPAYTLGGFGGGIAQDEKTYIDLVKQGLS 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   Q L+E  + G  E+   VM DA      I     + +     ++  +S  V P++
Sbjct: 198 ASPIKQCLVEISIAGYKEIEYEVMRDADGTCITIC--NMENFDPVGVHT-GDSIVVAPSQ 254

Query: 219 -IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +    +  ++  +    +A+G  G     F   P +   + +E+N 
Sbjct: 255 TLNDKDFHMLRSSSIHIIKALGIIGACNVQFALHPETSAYYLIEVNP 301


>gi|308173514|ref|YP_003920219.1| pyrimidine-specific carbamoyl-phosphate synthetase large subunit
           [Bacillus amyloliquefaciens DSM 7]
 gi|307606378|emb|CBI42749.1| pyrimidine-specific carbamoyl-phosphate synthetase (large subunit)
           [Bacillus amyloliquefaciens DSM 7]
 gi|328553554|gb|AEB24046.1| carbamoyl phosphate synthase large subunit [Bacillus
           amyloliquefaciens TA208]
 gi|328911654|gb|AEB63250.1| pyrimidine-specific carbamoyl-phosphate synthetase (large subunit)
           [Bacillus amyloliquefaciens LL3]
          Length = 1071

 Score = 68.6 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 30/214 (14%), Positives = 79/214 (36%), Gaps = 14/214 (6%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC--PSILVNRFTMDSQHLISPPYV 129
           L    +    + +     + D+ + +Q + +  VP     + +     +     I  P +
Sbjct: 646 LSARGVKILGTSLEDLDRAEDRDKFEQALEALNVPQPLGKTAVSVSEAVKIAASIGYPVL 705

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           ++P        + ++  ++ +   +  +   N    +LI++Y+ G E+    + D    V
Sbjct: 706 VRPSYVLGGRAMEIVYHEEELLHYMKNAVKINPQHPVLIDRYLTGKEIEVDAVSDGETVV 765

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               +   +           +S  V P + +  DI K++++      + +   G+    F
Sbjct: 766 IPGIMEHIERAGVHS----GDSIAVYPPQSLSEDIKKKIEQYTVALAKGLNIIGLLNIQF 821

Query: 249 LFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277
           +      +V+ LE+N       P ++ ++  P  
Sbjct: 822 VLSQ--GEVYVLEVNPRSSRTVPFLSKITKIPMA 853



 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 46/298 (15%), Positives = 107/298 (35%), Gaps = 38/298 (12%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL++ G++V  ++ +                       +  ++   +PD     L G  G
Sbjct: 36  ALKEEGYEVILVNSNPATIMTDTEMADRVYIEPLTPEFLTRIIRKERPDAILPTLGGQTG 95

Query: 64  EDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFT 117
            +  V+     +L    +    + + A   + D+   + +++    PV  S ++   +  
Sbjct: 96  LNLAVELSDLGVLAECGVEVLGTKLSAIQQAEDRDLFRTLMNELNEPVPESEIIRTLQEA 155

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IE 176
            +    I  P +++P       G  +   +  +   +      +   Q L+E+ + G  E
Sbjct: 156 EEFVSRIGFPVIVRPAYTLGGTGGGICSNEAELKEIVENGLKLSPVHQCLLEKSIAGYKE 215

Query: 177 LTCGVMGD-ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLA 234
           +   VM D     +    +   D           +S  V P++ +    Y+ ++ ++   
Sbjct: 216 IEYEVMRDSRDHAIVVCNMENIDPVGIHT----GDSIVVAPSQTLSDREYQLLRNVSLKL 271

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
            +A+G  G        DP S + + +E+N  P ++  S     +   GY   +L   +
Sbjct: 272 IRALGIEGGCNVQLALDPDSFQYYIIEVN--PRVSRSS--ALASKATGYPIAKLAAKI 325


>gi|298374354|ref|ZP_06984312.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Bacteroides sp.
           3_1_19]
 gi|298268722|gb|EFI10377.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Bacteroides sp.
           3_1_19]
          Length = 512

 Score = 68.6 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 41/223 (18%), Positives = 83/223 (37%), Gaps = 23/223 (10%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       +   + +            DK+ +++ + +  VPV P    
Sbjct: 86  AIHPGYGFLSENADFARCCKQEGLIFIGPSAETMEAMGDKIAARKRMIAAEVPVVPGTEQ 145

Query: 114 NRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
              + +        I  P ++K   GG   G+ +I +   +      + S +      D 
Sbjct: 146 PLQSAEEALRVCEEIGFPVMLKASMGGGGKGMRLIHEKGEVVEAYHTARSESLSSFGDDT 205

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK---IPL 221
           + IE++V+    +   ++GD   +V  +       +  E      N   V  +    +  
Sbjct: 206 VYIEKFVEEPHHIEFQILGDNHGNVIHL-------FDRECSVQRRNQKIVEESPSPFLTA 258

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           D+ KE+   A  A +A+   G    +FL D   R  ++LE+N 
Sbjct: 259 DLRKEMGEKAVAAAKAVHYSGAGTIEFLVDK-DRHFYFLEMNT 300


>gi|322514109|ref|ZP_08067179.1| phosphoribosylglycinamide formyltransferase 2 [Actinobacillus ureae
           ATCC 25976]
 gi|322120039|gb|EFX92015.1| phosphoribosylglycinamide formyltransferase 2 [Actinobacillus ureae
           ATCC 25976]
          Length = 393

 Score = 68.6 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 54/310 (17%), Positives = 102/310 (32%), Gaps = 58/310 (18%)

Query: 19  GKACASALEDAGFKVSQID--------------------VDRSVGLVLAHLKPDLAFNVL 58
           GK     L+  G +V  +D                       ++  ++   KPD     +
Sbjct: 24  GKEVVIELQRLGVEVIAVDRYENPPAQQVAHRSYTISMLDGAALRALVEQEKPDFIVPEV 83

Query: 59  HGNFGEDGLVQAILELLEIPY-THSGILASALSMDKM-RSKQVVSSCGVPVCPSILVNRF 116
                E      ++EL +  Y       A+ L+M++    +      G+   P   V+ F
Sbjct: 84  -----EAIATATLVELEQEGYNVVPTAKATQLTMNREGIRRLAAEELGLKTSPYFFVDNF 138

Query: 117 TMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLD--LLQSSSWNHGDQLLIEQYV 172
               + +  I  P V+KP+   S  G  VIK +  I       Q        ++++E ++
Sbjct: 139 DDFQKAVVEIGLPCVVKPIMSSSGHGQSVIKSEDQIQQAWDYSQEGGRAGSGRVIVEGFI 198

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYEL----KYSSLNSTHVL-PAKIPLDIYKEV 227
                          ++T++ V   +  S+      +    +      P  +     K  
Sbjct: 199 K-----------FDYEITQLTVRHVNGTSFLAPIGHRQEDGDYRESWQPQAMSELALKRA 247

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP---GMT-----PVSIFPEMAA 279
           Q  A     A+G RGI   +        ++ + E++ +P   GM       +S F   A 
Sbjct: 248 QETAERITTALGGRGIFGVELFV--CGDEIIFNEVSPRPHDTGMVTMASQELSQFALHAR 305

Query: 280 YA-GYSFREL 288
              G    E+
Sbjct: 306 AILGLPIPEI 315


>gi|319639060|ref|ZP_07993817.1| carbamoyl-phosphate synthase large subunit [Neisseria mucosa C102]
 gi|317399638|gb|EFV80302.1| carbamoyl-phosphate synthase large subunit [Neisseria mucosa C102]
          Length = 1071

 Score = 68.6 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 28/192 (14%), Positives = 72/192 (37%), Gaps = 8/192 (4%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYVIKPL 133
            +    +   +   + D+ R ++V++  G+   P+ + +           I  P V++P 
Sbjct: 652 GVNIIGTSADSIDAAEDRERFQKVLNDLGLRQPPNRIAHNEEEALVKAEEIGYPLVVRPS 711

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEI 192
                  + ++   + +   + ++   +    +L++ ++ + IE+    + D    V   
Sbjct: 712 YVLGGRAMQIVHSAEELQKYMREAVQVSEDSPVLLDFFLNNAIEVDVDCVSDGQDVVIGG 771

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            +   +       +S  +   + P  +  +I  E++R       A+G  G+    F    
Sbjct: 772 IMQHVEQAGI---HSGDSGCSLPPYSLSEEIQDEIRRQTKAMAYALGVVGLMNVQFAV-- 826

Query: 253 LSRKVFWLEINV 264
               VF LE+N 
Sbjct: 827 QDGVVFVLEVNP 838



 Score = 66.3 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 50/278 (17%), Positives = 101/278 (36%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +              DV        ++V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYKVILVNSNPATIMTDPEMADVTYIEPIMWQTVEKIIAKERPDAILP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      +L    +    +   A   + D+ R K+ +   G+    S +
Sbjct: 89  TMGGQTALNCALDLARNGVLAKYNVELIGATEDAIDKAEDRGRFKEAMEKIGLSCPKSFV 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     + +Q  +  P +I+P       G  +            +    +   +LLIEQ
Sbjct: 149 CHTMNEALAAQEQVGFPTLIRPSFTMGGSGGGIAYNKDEFLAICERGFDASPTHELLIEQ 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            V G  E    V+ D + +   I   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SVLGWKEYEMEVVRDKNDNCIIICSIEN----FDPMGVHTGDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RNASLAVLREIGVDTGGSNVQFAVNPENGEMIVIEMNP 302


>gi|167516950|ref|XP_001742816.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163779440|gb|EDQ93054.1| predicted protein [Monosiga brevicollis MX1]
          Length = 1485

 Score = 68.6 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 46/308 (14%), Positives = 103/308 (33%), Gaps = 43/308 (13%)

Query: 7    GISSEREVSLSSGKACASALEDAG-------FKVSQI--DVDRSVGLVLAHLKPDLAFNV 57
            G S E + S      C   L D G       +    +  D D S  L    L  +   + 
Sbjct: 957  GSSVEFDYS---AVQCIRTLRDLGKKTIMVNYNPETVSTDYDESDRLYFEELSLERVLD- 1012

Query: 58   LHGNFGEDGLVQAI-----------LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP 106
            +H    + G+V ++           L    +    +       + D+ +  +++   GV 
Sbjct: 1013 IHDKENDSGVVVSVGGQIPNNLAMHLHEQGMQILGTHPENIDRAEDRDKFSKLMDDIGVD 1072

Query: 107  VCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164
                  +       D  + +  P +++P    S   + V++  + +   L +++  +   
Sbjct: 1073 QPAWRELTNLAEAEDFCNTVGYPVLVRPSYVLSGAAMNVVRTPEQLDRYLREAAEVSRDH 1132

Query: 165  QLLIEQYVDGIEL----TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KI 219
             ++I +++ G            G+         V ++  +S        ++T VLPA  +
Sbjct: 1133 PVVISKFIQGAREIELDAVAQKGEVVAYAIAEHVEQAGVHS-------GDATLVLPAQDL 1185

Query: 220  PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279
              +I++ +         A+   G   + F+    S  +  +E N    +      P  + 
Sbjct: 1186 EDNIFQGILESGRKIAAALQISGPFNAQFIV-EDSGAIKVIETN----LRASRSLPFCSK 1240

Query: 280  YAGYSFRE 287
              G  F +
Sbjct: 1241 VMGIDFVD 1248



 Score = 55.1 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 54/299 (18%), Positives = 102/299 (34%), Gaps = 40/299 (13%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                       V  V+   +PD  F 
Sbjct: 425 SGSQAIKALKERNVQSILINPNIATVQTAEGLADQVYLLPVIPEFVQSVIEKERPDGIFL 484

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
              G    +  ++     IL    +    + + +   + D+      ++  G  + PSI 
Sbjct: 485 QFGGQTALNCGIELDKLGILSHYGVRVLGTSVSSIIATEDRDIFAAKLTEIGERIAPSIA 544

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  + + H I  P +++       LG      D  +    L S +++   Q+L+E+
Sbjct: 545 ATSTEAAIQAAHEIGYPVIVRAAFSLGGLGSGFAHDDAQLRT--LCSRAFSSCPQVLVEK 602

Query: 171 YVDG-IELTCGVMGDA-SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            + G  E+   V+ D     VT   +   D           +S  V P++ +    Y  +
Sbjct: 603 SLKGWKEIEYEVVRDQYDNCVTVCNMENFDPLGIHT----GDSIVVAPSQTLSDKDYHLL 658

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           +  +    + +G  G     F  DPLSR    +E N  P ++  S     +   GY   
Sbjct: 659 RSASIRVARQLGIVGECNVQFALDPLSRDYCIIEAN--PRLSRSS--ALASKATGYPLA 713


>gi|20279448|gb|AAM18728.1|AC092548_6 putative acetyl-CoA carboxylase [Oryza sativa Japonica Group]
          Length = 2267

 Score = 68.6 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 40/230 (17%), Positives = 76/230 (33%), Gaps = 29/230 (12%)

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--------- 110
           G+  E+  +   L+   I +      A A   DK+ S  +  + GVP  P          
Sbjct: 131 GHASENPELPDALKEKGIIFLGPPSAAMAALGDKIGSSLIAQAAGVPTLPWSGSHVKIPP 190

Query: 111 ---------------ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
                          +      + S  ++  P +IK   GG   GI  +  D  +     
Sbjct: 191 ESCNSIPEEMYRSACVSTTEEAVASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFK 250

Query: 156 QSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHV 214
           Q      G  + I +       L   ++ D   +V  +            K        V
Sbjct: 251 QVQGEVPGSPIFIMKVASQSRHLEVQLLCDKHGNVAALHSRDCSVQRRHQKIIEEGPITV 310

Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            P++   ++ +  +RLA   H      G +  ++L+   + + ++LE+N 
Sbjct: 311 APSETVKELEQAARRLAKCVHYV----GAATVEYLYSMETGEYYFLELNP 356


>gi|311109842|ref|YP_003982693.1| acetyl-CoA carboxylase biotin carboxylase subunit 2 [Achromobacter
           xylosoxidans A8]
 gi|310764531|gb|ADP19978.1| acetyl-CoA carboxylase biotin carboxylase subunit 2 [Achromobacter
           xylosoxidans A8]
          Length = 662

 Score = 68.6 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 76/220 (34%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      +    + +      A     +K  +K+++ +  VP  P    
Sbjct: 83  AVHPGYGFLAENADFARAVRDAGLVFVGPSPEAIEAMGNKANAKRLMLAAHVPCVPGYQG 142

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS-----SWNHGD 164
              +      +   I  P ++K   GG   G+ ++ +   +P  L  +      ++   +
Sbjct: 143 EDQSDATLTAAARDIGLPVMVKAAAGGGGRGMRLVLEPGELPAALASARSEALGAFGSDE 202

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
            +L    ++   +   V  D   +V  +A           K             I   + 
Sbjct: 203 LILERAVIEPRHIEIQVFADGHGNVIHLAERDCSVQRRHQK----LIEEAPSPAIDEALR 258

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +   A  A ++IG  G    +FL D  + + +++E+N 
Sbjct: 259 ARMGAAAVAAAKSIGYVGAGTMEFLLD-RNGEFYFMEMNT 297


>gi|260554059|ref|ZP_05826322.1| acetyl/propionyl-CoA carboxylase [Acinetobacter sp. RUH2624]
 gi|260404798|gb|EEW98305.1| acetyl/propionyl-CoA carboxylase [Acinetobacter sp. RUH2624]
          Length = 646

 Score = 68.6 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 33/198 (16%), Positives = 68/198 (34%), Gaps = 14/198 (7%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD----SQHLISPPYVIK 131
           +I +      A  L   K  SK  +   GVP  P    +   ++        I  P ++K
Sbjct: 100 QITFIGPTASAIELMGSKRLSKIAMIEAGVPCVPGYEGDCQDLEYLAAQAEQIGFPIMVK 159

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSS-----SWNHGDQLLIEQYVDGIELTCGVMGDAS 186
              GG   G+ ++++   +   L  +      ++  G+ +L +  +    +   V GD  
Sbjct: 160 ASAGGGGRGMRLVQQASELVEVLQTARSEAENAFGSGELILEKAVIAPRHVEIQVFGDTH 219

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRS 246
            +   +            K             +  ++ +++   A  A +A    G    
Sbjct: 220 GNYVYLFERDCSIQRRHQK----VVEEAPCPVMTPELRQQMGEAAVAAARACAYVGAGTV 275

Query: 247 DFLFDPLSRKVFWLEINV 264
           +FL D      ++LE+N 
Sbjct: 276 EFLLDAS-GAFYFLEMNT 292


>gi|218886815|ref|YP_002436136.1| phosphoribosylamine--glycine ligase [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218757769|gb|ACL08668.1| phosphoribosylamine/glycine ligase [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 425

 Score = 68.6 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 28/167 (16%), Positives = 62/167 (37%), Gaps = 8/167 (4%)

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI--SPPYVIKP 132
             +P        + L   K  +K+V+ + GVP     + +       ++     P V+K 
Sbjct: 85  AGVPCFGPDAYGAQLEGSKAFAKEVMRAAGVPTAAFGVFDTADAARAYIRQNGAPVVVKA 144

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQ---SSSW-NHGDQLLIEQYVDGIELT--CGVMGDAS 186
               +  G++V +        +       ++ + GD++++E  + G E +  C   G+  
Sbjct: 145 DGLAAGKGVVVARTVDEALEAVDDMMVRRAFGDAGDRVVVESALAGEEASFLCLCDGETV 204

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           L +      K+ F + E   +     +     +P   Y+E+  L   
Sbjct: 205 LPLPSAQDHKAVFDNDEGPNTGGMGAYSPAPVLPETRYEEMIDLVIR 251


>gi|213864771|ref|ZP_03386890.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Typhi str. M223]
          Length = 82

 Score = 68.6 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 3/81 (3%)

Query: 176 ELTCGVMGDASLDVTEIA--VPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAF 232
           E+ C V+G+ +   +     V  SDFY+Y+ KY     +  V+PA I  +I  +++ +A 
Sbjct: 2   EIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAV 61

Query: 233 LAHQAIGCRGISRSDFLFDPL 253
            A+Q +GC G++R D    P 
Sbjct: 62  QAYQTLGCAGMARVDVFLTPE 82


>gi|330465743|ref|YP_004403486.1| carbamoyl-phosphate synthase l chain ATP-binding protein
           [Verrucosispora maris AB-18-032]
 gi|328808714|gb|AEB42886.1| carbamoyl-phosphate synthase l chain ATP-binding protein
           [Verrucosispora maris AB-18-032]
          Length = 583

 Score = 68.6 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 73/221 (33%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLV-QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            +H  +G   E+    QA+++   + +      A     DK+ ++ +    G P+ P   
Sbjct: 76  AVHPGYGFLSENADFAQAVID-AGLTWIGPTPQAIRDLGDKVTARHIAQRAGAPLVPGTA 134

Query: 113 VNRFTMDSQHLI----SPPYVIKPLKGGSSLGIIVIKKDQSIPL----DLLQSSSWNHGD 164
               + D           P  IK   GG   G+ V +  + IP        ++ +     
Sbjct: 135 DPVGSADEVMAFAVDHGLPVAIKAAFGGGGRGLKVARTMEEIPQLFESATREAVAAFGRG 194

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           +  +E+Y+D    +   V+ D   +V  +            K             +  + 
Sbjct: 195 ECFVERYLDRPRHVEAQVLADQHGNVIVVGTRDCSLQRRHQK----LVEEAPAPFLTAEQ 250

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             ++   A    +  G  G    ++L       + +LE+N 
Sbjct: 251 RAQIHDSAKAICREAGYHGAGTVEYLV-GNDGTISFLEVNT 290


>gi|298675345|ref|YP_003727095.1| carbamoyl-phosphate synthase large subunit [Methanohalobium
           evestigatum Z-7303]
 gi|298288333|gb|ADI74299.1| carbamoyl-phosphate synthase, large subunit [Methanohalobium
           evestigatum Z-7303]
          Length = 1076

 Score = 68.6 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 45/303 (14%), Positives = 105/303 (34%), Gaps = 31/303 (10%)

Query: 12  REVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLV--- 68
             VS  S +   S + +   +    D D S  L    L  +   NV+      DG++   
Sbjct: 574 HAVSAISEENIESHIINNNPETVSTDYDTSDKLFFEPLTLEDVMNVIE-KEQPDGVLVQF 632

Query: 69  ------------QAILEL---LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--SI 111
                       Q  LE    L+     +       + D+ +   ++   G+        
Sbjct: 633 GGQTSVNLSLPLQHELERRNDLKTKIFGTSPDKIDTAEDRDKFYALMKELGINQPDGRYA 692

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
           L     ++    I  P +++P        + ++  ++ +   L +S   +  + +LI+ +
Sbjct: 693 LSQGEAINFATEIGYPVLVRPSYVLGGRAMEIVYDEEELKRYLRESVCVSKDNPILIDDF 752

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRL 230
           ++G      +  DA  D   + +     +  E    S +S  V+P + +  +  + V+  
Sbjct: 753 LEG---AVEIDVDAVCDGENVLIGAIMEHIEEAGVHSGDSACVIPPQSLTEETMEIVRDY 809

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
                 ++  +G+   +        +V+ LE N +   T     P ++   G    ++  
Sbjct: 810 TRKIALSLDVKGL--INIQMAKRDGEVYVLEANPRSSRT----IPFVSKAVGIPLAKIAA 863

Query: 291 WMV 293
            ++
Sbjct: 864 QVI 866



 Score = 61.3 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 42/278 (15%), Positives = 97/278 (34%), Gaps = 38/278 (13%)

Query: 18  SGKACASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLV 68
           SG     AL + G +V  +         D + +  + +  L+P +   ++      DG++
Sbjct: 30  SGSQACRALREEGIEVVLVNSNPATIMTDPEMADSVYIEPLEPRVVEKIIE-RERPDGII 88

Query: 69  QAI-----------------LELLEIPYTHSGILASALSMDKMRSKQVVSSCG--VPVCP 109
             +                 LE   +    + + A   + D+   K+ +   G  VP   
Sbjct: 89  AGLGGQTGLNVTSELSDLGALEKYNVKLLGTPLDAITNTEDRELFKEKMGDIGEKVPQSK 148

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
           +I   +   +    +  P +++P       G  +    + +   + +    +   Q+L+E
Sbjct: 149 AISSLKEAEEMIDELGLPLIVRPAYTLGGAGGGIAHTKEQLFEIVERGLRRSRIHQVLVE 208

Query: 170 QYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKE 226
           + V G  E    VM D++     I   ++    ++        S  V P++ +  + ++ 
Sbjct: 209 ESVLGWKEFEYEVMRDSNDTCVIICNMEN----FDPMGIHTGESIVVTPSQTLSDEEHQM 264

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           ++  A    ++ G  G     F           +E+N 
Sbjct: 265 LRSSAINIIRSFGIEGGCNIQFAV--KDGDYRVVEVNP 300


>gi|253988043|ref|YP_003039399.1| carbamoyl phosphate synthase large subunit [Photorhabdus
           asymbiotica subsp. asymbiotica ATCC 43949]
 gi|253779493|emb|CAQ82654.1| carbamoyl-phosphate synthase large chain [Photorhabdus asymbiotica]
          Length = 1074

 Score = 68.6 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 32/197 (16%), Positives = 81/197 (41%), Gaps = 10/197 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           LE+  +P   +   A   + D+ R KQ V+  G+    +  V      ++  +++  P V
Sbjct: 654 LEIAGVPIIGTSPDAIDRAEDRERFKQAVNRLGLKQPANATVTTIDRAVEKGNVLGYPLV 713

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  +  +      + S ++   +L+++++ D +E+    + D    
Sbjct: 714 VRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDRFLDDAVEVDVDAICDGERV 773

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           +    +   +    +    S +S   LPA  +  +I   +++        +G RG+    
Sbjct: 774 LIGGIMEHIE----QAGVHSGDSACSLPAYTLSQEIQDVMRQQVEKLAFELGVRGLMNVQ 829

Query: 248 FLFDPLSRKVFWLEINV 264
           F     + +V+ +E+N 
Sbjct: 830 FAV--KNDEVYLIEVNP 844



 Score = 67.5 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 96/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D +              V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVVLVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAILP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +    Q +L+   +    +   A   + D+ R    +   G+    S +
Sbjct: 89  TMGGQTALNCALELECQGVLKEFGVTMIGATADAIDKAEDRRRFDIAMKKIGLETPRSGI 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     +     +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHSMEEALAVAEKVGFPCIIRPSFTMGGSGGGIAYNREEFEEICERGLDLSPTKELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + + +   ++   D           +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENLDAMGIHT----GDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RNASMAVLREIGVETGGSNVQFAVNPKNGRLVIIEMNP 302


>gi|224014656|ref|XP_002296990.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220968370|gb|EED86718.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 1291

 Score = 68.6 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 76/221 (34%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E        E   I +    +       DK +++++     V V P    
Sbjct: 157 AIHPGYGFLSESAEFAQACEDNGITFVGPSVENLVTFGDKTKARELAIKADVSVVPGTSE 216

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGDQ 165
            +      +        P +IK  KGG   G+ V+ K + +         ++ +      
Sbjct: 217 PLTTTEAAVAFVEEYGLPVIIKAAKGGGGKGMRVVNKKEDLIPLFEAASSEALASFGDGG 276

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDI 223
             +E+YV     +   V+GD   +V  +           ++        + PA    +++
Sbjct: 277 CFVERYVTNAKHVEVQVIGDGKGNVVHLWE-----RDCSVQRRHQKIVEIAPAVHHSMEV 331

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            K V   A    +A   +     +FL D   R  +++E+N 
Sbjct: 332 RKAVLEDALKITKACNYKNAGTVEFLVDDQGRH-YFMEVNP 371


>gi|53712902|ref|YP_098894.1| biotin carboxylase [Bacteroides fragilis YCH46]
 gi|52215767|dbj|BAD48360.1| biotin carboxylase [Bacteroides fragilis YCH46]
          Length = 503

 Score = 68.6 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 80/220 (36%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+       E   + +        A    K  +++++   G+P+ P    
Sbjct: 76  AIHPGYGFLSENADFARRCEEEGVIFIGPSADIIARMGIKTEARRIMREAGLPIVPGTED 135

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN----HGDQ 165
            +            +  P ++K L GG   G+ +++ ++ +   L  S S        D 
Sbjct: 136 PVKGIAEAKKVAAEVGYPIMLKALAGGGGKGMRLVRSEEEMETALRLSQSEAGTSFGNDA 195

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+Y++    +   ++GD   +V  +   +        K             +  +  
Sbjct: 196 VYIEKYIENPHHIEVQILGDKYGNVIHLYERECSIQRRNQK----VIEESPSPFVNPETR 251

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            ++ ++A  A + I        +F+ D   +  ++LE+N 
Sbjct: 252 AKMLKVAVEACKRINYYSAGTLEFMMDK-DQNFYFLEMNT 290


>gi|325981776|ref|YP_004294178.1| acetyl-CoA carboxylase, biotin carboxylase [Nitrosomonas sp. AL212]
 gi|325531295|gb|ADZ26016.1| acetyl-CoA carboxylase, biotin carboxylase [Nitrosomonas sp. AL212]
          Length = 473

 Score = 68.6 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 37/248 (14%), Positives = 85/248 (34%), Gaps = 23/248 (9%)

Query: 34  SQIDVDRSVGLVLAHLKPDLAF----NVLHGNFG---EDGLVQAILELLEIPYTHSGILA 86
             I  D     +  H   DLA     + +H  +G   E+       +   + +       
Sbjct: 50  YYIGSDPVACYLNIHALVDLALATGCDAVHPGYGFLSENAKFARACKERGLIFIGPNADV 109

Query: 87  SALSMDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGII 142
                DK  +++ + + G+PV P     +       +    I  P ++K   GG   GI 
Sbjct: 110 IHRMGDKTEARKAMKAAGLPVTPGSEGNVRSIEEAQEVAAQIGYPVMLKATSGGGGRGIR 169

Query: 143 VIKKDQSIPLDLL-----QSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKS 197
                  +  +        + ++ +    L +  V+ + +   ++ D   +V  +     
Sbjct: 170 RCDNADELKHNYARVISEATKAFGNAHVFLEKCIVNPVHIEVQILADQHGNVIHLYERDC 229

Query: 198 DFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256
                  K        + P  ++     + +  LA +A +++G       +FL D  + +
Sbjct: 230 SIQRRNQKL-----IEIAPSPQLDEAQRQYIGGLAVIAAKSVGYTNAGTVEFLLD-DNGR 283

Query: 257 VFWLEINV 264
            +++E+N 
Sbjct: 284 FYFMEMNT 291


>gi|254482851|ref|ZP_05096088.1| Carbamoyl-phosphate synthase L chain, ATP binding domain protein
           [marine gamma proteobacterium HTCC2148]
 gi|214036932|gb|EEB77602.1| Carbamoyl-phosphate synthase L chain, ATP binding domain protein
           [marine gamma proteobacterium HTCC2148]
          Length = 674

 Score = 68.6 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 79/221 (35%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       +  EI +    + A      K  +KQ++ + GVP+ P    
Sbjct: 81  AIHPGYGFLSENADFCKACKENEIVFIGPPVGAIESMGSKSAAKQIMGAAGVPLVPGYHG 140

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
           +    D    +   +  P ++K + GG   G+  +   +     L  +          D 
Sbjct: 141 DDQGRDVLKSASDDMGYPVLLKAVAGGGGKGMRQVWSPEEFDEALAAARREAMNGFGNDD 200

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           +L+E+Y+     +   V  D+  +   +           ++          PA  +  ++
Sbjct: 201 MLVEKYLTQPRHVEVQVFCDSHGNAVYL-----FERDCSVQRRHQKVIEEAPAPGMTAEL 255

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              +   A  A QAI   G    +FL D      +++E+N 
Sbjct: 256 RATMGDAAIRAAQAIDYEGAGTVEFLLD-SDGSFYFMEMNT 295


>gi|212716892|ref|ZP_03325020.1| hypothetical protein BIFCAT_01836 [Bifidobacterium catenulatum DSM
           16992]
 gi|212660177|gb|EEB20752.1| hypothetical protein BIFCAT_01836 [Bifidobacterium catenulatum DSM
           16992]
          Length = 1126

 Score = 68.6 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 44/288 (15%), Positives = 103/288 (35%), Gaps = 36/288 (12%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQIDVDRS---------------------VGLV 45
           G ++E + S   G      L + G +V  ++ + +                     +  +
Sbjct: 21  GQAAEFDYS---GTQACRVLREEGIRVILVNSNPATIMTDPEMADATYIEPISTPILEQI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +A  +PD     L G    +  +      +L+   +    + + A     D+   K+VV 
Sbjct: 78  IAKERPDALLPTLGGQTALNAAMALGEAGVLKKYNVELIGASLEAIDRGEDRELFKKVVE 137

Query: 102 SCGVPVCPSILVNRFTMDS--QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G     S + +              P V++P      LG  +   ++ +         
Sbjct: 138 EAGAESARSDIAHSLEEVDKIAEKFGYPLVVRPSFTMGGLGSGIAHDEEELHRIAGAGIH 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
           ++  D++LIE+ ++G  E    +M D   +V  +   ++      +   + +S  V P  
Sbjct: 198 YSPTDEVLIEEGIEGWKEYELELMRDKKDNVVVVCPIENVD---PVGVHTGDSITVAPVF 254

Query: 219 -IPLDIYKEVQRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
            +    Y++++ +     + +G   G     F  +P + ++  +E+N 
Sbjct: 255 TLTDREYQKLRDIGIAIIRGVGVDTGGCNIQFAINPNTGRIIVIEMNP 302



 Score = 51.3 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 33/233 (14%), Positives = 75/233 (32%), Gaps = 29/233 (12%)

Query: 67  LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTMDSQHLI 124
            + A L+   +P   +   +  L+ ++    +V+    +        L      ++ H I
Sbjct: 651 SLAARLKAAGVPILGTTPESIDLAENRELFGEVLKKAEMNAPRYGTALSLDEAREAAHNI 710

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
             P +++P       G+ ++  D  +   + ++      D +     V G   +  ++  
Sbjct: 711 GYPVLVRPSYVLGGRGMEIVYDDAQLRKYVDRALKEAQADTV-----VSGRLPSPLLIDK 765

Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK--------------IPLDIYKEVQRL 230
              D  EI V     +  E  Y      HV  A               +  D  + ++  
Sbjct: 766 FLQDAVEIDV--DALFDGEELYIGGIMEHVEEAGVHSGDAACTLPPSTLSDDQIRRLREG 823

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283
            +   +  G +G+    + F      ++ +E N +   T     P  +   G 
Sbjct: 824 TYAIAKGCGVQGLINVQYAFMA--NTLYVIEANPRASRT----VPFASKATGV 870


>gi|56478162|ref|YP_159751.1| carbamoyl phosphate synthase large subunit [Aromatoleum aromaticum
           EbN1]
 gi|56314205|emb|CAI08850.1| Carbamoyl-phosphate synthase large chain [Aromatoleum aromaticum
           EbN1]
          Length = 1075

 Score = 68.6 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 26/198 (13%), Positives = 75/198 (37%), Gaps = 8/198 (4%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--QHLISPPYV 129
           LE   +P   +       + D+ R +++++  G+   P+               I  P V
Sbjct: 648 LEDNGVPIIGTSPDMIDAAEDRERFQKLLNDLGLKQPPNRTARTPEAAVRLAAEIGYPLV 707

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++ + + +   + ++   ++   +L+++++ D  E+    + D    
Sbjct: 708 VRPSYVLGGRAMEIVHEQKDLERYMREAVKVSNESPVLLDRFLNDATEVDVDALSDGRQV 767

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           +    +   +       +S  ++  + P  +   +  E++R      +A+   G+    F
Sbjct: 768 IIGGIMEHIEQAGV---HSGDSACSLPPYTLSAKLQDELRRQTEAMARALNVCGLMNVQF 824

Query: 249 LFDPLSRK--VFWLEINV 264
                  +  V+ LE+N 
Sbjct: 825 AIQGDGDEATVYVLEVNP 842



 Score = 60.5 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 47/278 (16%), Positives = 99/278 (35%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +              DV        + V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYKVILVNSNPATIMTDPETADVTYIEPITWQVVESIIEKERPDALLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      +LE   +    +   A   + D+++ K  ++  G+    S +
Sbjct: 89  TMGGQTALNCALDLARNGVLEKYGVELIGASRDAIDKAEDRLKFKDAMTKIGLGSARSAI 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     +  Q  I  P +I+P       G  +    +       +    +   +LLIE+
Sbjct: 149 AHSMEEALQVQGGIGFPVIIRPSFTLGGTGGGIAYNMEEFDEICKRGLEASPTSELLIEE 208

Query: 171 YVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + + +   ++   D           +S  V P++ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDRADNCIIVCSIENLDPMGVHT----GDSITVAPSQTLTDKEYQIL 264

Query: 228 QRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P   ++  +E+N 
Sbjct: 265 RNASIAVLREIGVDTGGSNVQFAINPKDGRMIVIEMNP 302


>gi|89098721|ref|ZP_01171603.1| carbamoyl-phosphate synthase large subunit [Bacillus sp. NRRL
           B-14911]
 gi|89086683|gb|EAR65802.1| carbamoyl-phosphate synthase large subunit [Bacillus sp. NRRL
           B-14911]
          Length = 1070

 Score = 68.6 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 39/279 (13%), Positives = 97/279 (34%), Gaps = 31/279 (11%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ------ 69
           A+++AG++   I         D   S  L    L  +   +++     E  +VQ      
Sbjct: 580 AIKEAGYEAIIINNNPETVSTDFSISDKLYFEPLTIEDVMHIIDLEKPEGAVVQFGGQTA 639

Query: 70  ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--QHL 123
               A L    +    + +     + D+ + +  ++  G+P             +     
Sbjct: 640 INLAAELVKRGVKILGTSLENLDRAEDRDKFEMALTDLGIPQPQGKTAFSAEDAAVIAAE 699

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + ++ K++ +   +  +   N    +LI++Y+ G E+    + 
Sbjct: 700 IGYPVLVRPSYVLGGRAMEIVYKEEELLHYMKNAVRVNPEHPVLIDRYLTGKEIEVDAIS 759

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D    V    +   +       +S  +     P  +  ++  ++        + +G  G+
Sbjct: 760 DGERVVIPGIMEHIERAGV---HSGDSIAVYPPQNLTDEVKAKLAEYTEKLAKGLGIIGL 816

Query: 244 SRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277
               ++      +VF LE+N       P ++ ++  P  
Sbjct: 817 LNIQYVVAK--GEVFVLEVNPRSSRTVPFLSKITNVPMA 853



 Score = 65.5 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 46/296 (15%), Positives = 107/296 (36%), Gaps = 34/296 (11%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL++ G++V  ++ +                       V  ++   +PD     L G  G
Sbjct: 36  ALKEEGYRVILVNSNPATIMTDTEIADAVYIEPLTLEFVSRIIRKERPDAIVPTLGGQTG 95

Query: 64  EDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFT 117
            +  V+     +LE   +    + + A   + D+   + +++  G PV  S +++     
Sbjct: 96  LNLAVELSKAGVLEECGVEVLGTKLSAIEKAEDRDLFRSLMNELGEPVPESEIIHNIDEA 155

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IE 176
           +     I  P +++P       G  +   ++ +          +   Q L+E+ + G  E
Sbjct: 156 LAFAEQIGYPVIVRPAFTLGGTGGGICHDEEELLEITASGLKNSPVTQCLLEKSIAGFKE 215

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +   VM D++ +   I V   +       ++  +        +    Y+ ++ ++    +
Sbjct: 216 IEYEVMRDSNDNA--IVVCNMENIDPVGVHTGDSIVVAPSQTLSDREYQLLRNVSLKIIR 273

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           A+   G        DP S   + +E+N  P ++  S     +   GY   +L   +
Sbjct: 274 ALEIEGGCNVQLALDPYSFDYYIIEVN--PRVSRSS--ALASKATGYPIAKLAAKI 325


>gi|186682759|ref|YP_001865955.1| hypothetical protein Npun_F2451 [Nostoc punctiforme PCC 73102]
 gi|186465211|gb|ACC81012.1| protein of unknown function DUF201 [Nostoc punctiforme PCC 73102]
          Length = 392

 Score = 68.6 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 29/177 (16%), Positives = 65/177 (36%), Gaps = 18/177 (10%)

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS 149
           + DK +   ++    +P   ++L+      SQ   + P ++KP+ G     I       S
Sbjct: 127 AFDKWKLHLLLQKHNIPTPETVLLKEIENISQ--FNYPVILKPVDGSGGKNIQKF---DS 181

Query: 150 IPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209
           +  +  Q+      D  ++++YV G ++ C V+                  +Y ++    
Sbjct: 182 LEEENFQAICNYPNDVYIVQKYVPGHDIGCSVL-----------CQDGQVLAYTIQQQLG 230

Query: 210 NSTHVLPA--KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +    P   K+       V  +       +   GI+  D  ++  + ++  +EIN 
Sbjct: 231 LTEGFTPKIDKLKFVHDSAVIDIVTKTMNVLKWSGIANLDLRYNSQTGQINVIEINP 287


>gi|322487747|emb|CBZ22988.1| putative carboxylase [Leishmania mexicana MHOM/GT/2001/U1103]
          Length = 665

 Score = 68.6 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 41/256 (16%), Positives = 91/256 (35%), Gaps = 30/256 (11%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H  +G   E+G  Q+ L+   I +      +     DK+ SK++  S GV   P  + 
Sbjct: 81  AVHPGYGFLSENGEFQSALQKNNIIFVGPDAHSIEAMGDKIESKRLAHSAGVTCIPGFIG 140

Query: 113 ---VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGDQ 165
               +   +     +  P +IK   GG   G+ V   D            ++ +  + D+
Sbjct: 141 EVKTHEDVLKFAREVGYPVMIKASGGGGGKGMRVAYNDSQCVEYYDMCKEEAKAAFNSDK 200

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           +L+E++++    +   V+ D   +   +   +        K             +     
Sbjct: 201 MLVEKFIENPRHIEIQVIADRRGNTLYLPERECSIQRRNQK----VIEEAPSVLLDAKTR 256

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI---FPEMAAYA 281
           K +   A    +A+        + + +P  ++ ++LE+N +       +    P      
Sbjct: 257 KAMGEEAVAMARAVQYVSAGTVENVVNPQ-KQFYFLEMNTR-------LQVEHPITEEIT 308

Query: 282 GYSFRELLLWMVEDAS 297
           G    +L+  M+  A+
Sbjct: 309 GI---DLVEQMLRAAA 321


>gi|238024521|ref|YP_002908753.1| acetyl/propionyl-CoA carboxylase subunit alpha [Burkholderia glumae
           BGR1]
 gi|237879186|gb|ACR31518.1| Acetyl/propionyl-CoA carboxylase, alpha subunit [Burkholderia
           glumae BGR1]
          Length = 675

 Score = 68.6 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 81/220 (36%), Gaps = 25/220 (11%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI------- 111
           +G   E+           + +    + A A    K  +K ++   GVP+ P         
Sbjct: 82  YGFLSENETFAEACAAAGLVFIGPPVQAIAAMGSKAAAKALMQQAGVPLVPGYHGADQDP 141

Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQL 166
            L++R        I  P ++K   GG   G+ V+++    P  L     +++S    D++
Sbjct: 142 ALLHR----EADAIGYPVLLKASAGGGGKGMRVVERSADFPAALASCQREAASSFGNDRV 197

Query: 167 LIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIY 224
           LIE+Y +    +   V GD   +   +           ++          PA  +     
Sbjct: 198 LIEKYLLRPRHVEVQVFGDTLGNTVYL-----FDRDCSVQRRHQKVLEEAPAPGLSDAQR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +   A  A +A+G  G    +F+      + +++E+N 
Sbjct: 253 RAMGDAAVAAARAVGYVGAGTVEFIVT--GEQFYFMEMNT 290


>gi|237755382|ref|ZP_04584010.1| carbamoyl-phosphate synthase large chain, C- section
           [Sulfurihydrogenibium yellowstonense SS-5]
 gi|237692466|gb|EEP61446.1| carbamoyl-phosphate synthase large chain, C- section
           [Sulfurihydrogenibium yellowstonense SS-5]
          Length = 530

 Score = 68.6 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 26/199 (13%), Positives = 78/199 (39%), Gaps = 14/199 (7%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYV 129
           LE L IP   +   +  ++ D+ R + ++   G+    S               I  P +
Sbjct: 97  LEKLNIPILGTSPESIDIAEDRERFRDLIIKLGIKQPESATAKSKDEAVKVAQEIGFPVL 156

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG---IELTCGVMGDAS 186
           ++P        + ++   + +   + ++        +LI++++DG   +++ C   G+  
Sbjct: 157 VRPSYVLGGRAMRLVYDMEELLKYIEEAVMVTEDRPILIDKFLDGSIEVDVDCVCDGEDV 216

Query: 187 L-DVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
           L       + ++  +S        ++T +    +P ++  +++  + +  +A+   G+  
Sbjct: 217 LVGAVMEHIEEAGIHS------GDSATCIPHYTLPDEVVIKIKEQSRMLAKALNTIGLIN 270

Query: 246 SDFLFDPLSRKVFWLEINV 264
             +       +++ +E N 
Sbjct: 271 IQYAI--KDNEIYIIEANP 287


>gi|307152668|ref|YP_003888052.1| cyanophycin synthetase [Cyanothece sp. PCC 7822]
 gi|306982896|gb|ADN14777.1| cyanophycin synthetase [Cyanothece sp. PCC 7822]
          Length = 879

 Score = 68.6 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 53/121 (43%), Gaps = 4/121 (3%)

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSIL---VNRFTMDSQHLISPPYVIKPLKGG 136
           T SGILA  L+ DK  +K ++   G+PV    +   ++      + +   P VIKPL G 
Sbjct: 207 TSSGILAVELACDKEGTKTILQDAGIPVPKGTVIQYLDELEEAIKDVGGYPIVIKPLDGN 266

Query: 137 SSLGIIV-IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195
              GI + I   +        +S+ +    ++IE+Y  G +    V+    + V E    
Sbjct: 267 HGRGITIDINSWEQAEEAYDLASAASKNRSVIIERYYKGSDHRILVINGKLIAVAERIPA 326

Query: 196 K 196
           +
Sbjct: 327 R 327


>gi|319442282|ref|ZP_07991438.1| phosphoribosylglycinamide formyltransferase 2 [Corynebacterium
           variabile DSM 44702]
          Length = 403

 Score = 68.6 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 55/306 (17%), Positives = 112/306 (36%), Gaps = 63/306 (20%)

Query: 2   AVLMGGISSE--REVSLSSGKACASALEDAGFKVSQID----------------VD---- 39
            +L+G  S E  REV++        AL+  G +V  +D                +D    
Sbjct: 18  VLLLG--SGELGREVTI--------ALQRLGVEVHAVDRYTGAPAQRVADFQYTIDMTDP 67

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
           ++V  ++  ++PD     +      D L  A +E   +        A+ L+M++   + +
Sbjct: 68  QAVRALVEQVRPDFVVPEIE-ALATDAL--AEVEDAGLATVVPTARATQLTMNREGIRTL 124

Query: 100 V-SSCGVPVCPSILVNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
                G+P    +  + +    D    I  P V+KP+   S  G   I+  + I      
Sbjct: 125 ADKELGLPNSRHVFASTYEEFEDGVRQIGIPCVVKPVMSSSGKGQSYIRDSEEIAPAWEY 184

Query: 157 SSS--WNHGDQLLIEQYVDGIELTCGVM---------GDASLDVTEIAVPKSDFYSYELK 205
           + S      ++++IEQ+V   +    ++         G+ +    E    +     Y   
Sbjct: 185 AMSGGRVRSERVIIEQFVP-FDYEITLLTIRSVDPATGEDATWFCEPIGHRQQHGDYVES 243

Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +         PA++  +     + +A     A+G RG+   +         V++ E++ +
Sbjct: 244 W--------QPAQMSEEALGAARSVAARITGALGGRGVFGVELFI--KGNDVYFSEVSPR 293

Query: 266 P---GM 268
           P   GM
Sbjct: 294 PHDTGM 299


>gi|294786515|ref|ZP_06751769.1| acetyl-CoA carboxylase alpha chain [Parascardovia denticolens
           F0305]
 gi|315226092|ref|ZP_07867880.1| acetyl-coA carboxylase carboxyl transferase subunit alpha
           [Parascardovia denticolens DSM 10105]
 gi|294485348|gb|EFG32982.1| acetyl-CoA carboxylase alpha chain [Parascardovia denticolens
           F0305]
 gi|315120224|gb|EFT83356.1| acetyl-coA carboxylase carboxyl transferase subunit alpha
           [Parascardovia denticolens DSM 10105]
          Length = 620

 Score = 68.6 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 33/197 (16%), Positives = 63/197 (31%), Gaps = 12/197 (6%)

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM----DSQHLISPPYVI 130
             I +            DK+ +++V     VP  P I      +    D       P ++
Sbjct: 97  AGITWIGPKPGVLEDLGDKISARRVARVAQVPPVPGISDPVEDLHTLLDFATEHGYPVMM 156

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD--QLLIEQYVD-GIELTCGVMGDASL 187
           K   GG   GI + + +  +        S   GD  +  IE++V     +      D   
Sbjct: 157 KRTDGGGGRGITICRTEDELRAFYGAHDSLQGGDLSKYFIEKFVPHARHVETQCGRDKLG 216

Query: 188 DVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
             T  +           K             +   +   ++  +     ++G  G+   +
Sbjct: 217 SFTVYSTRDCSVQRRNQKLI----EEAPAPFLNDKVISRLETYSRRLFDSVGYEGLGTCE 272

Query: 248 FLFDPLSRKVFWLEINV 264
           F+  P S  V++LE+N 
Sbjct: 273 FMVTPTSD-VYFLEVNP 288


>gi|289668839|ref|ZP_06489914.1| carbamoyl phosphate synthase large subunit [Xanthomonas campestris
           pv. musacearum NCPPB4381]
          Length = 1080

 Score = 68.6 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 46/278 (16%), Positives = 102/278 (36%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL D G++V  +         D +            ++V  ++A  +PD    
Sbjct: 29  SGAQACKALRDEGYRVVLVNSNPATIMTDPNMADAVYIEPINWQTVEKIIAKERPDALLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      +LE   +    +   A  ++ D+   +  +   G+    + +
Sbjct: 89  TMGGQTALNCALDLADHGVLEKYNVELIGAKREAIRMAEDRELFRVAMGEIGLDCPKAAV 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     ++ Q  +  P +I+P       G  +    + +   + +    +   ++L+E+
Sbjct: 149 AHTLEEALEIQTRVGYPTIIRPSFTLGGSGGGIAYNREELIDIVGRGLELSPTTEVLVEE 208

Query: 171 YVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            V G  E    V+ D + + +   A+   D           +S  V PA+ +    Y+ +
Sbjct: 209 SVLGWKEFEMEVVRDTADNCIIVCAIENLDPMGVHT----GDSITVAPAQTLTDKEYQRL 264

Query: 228 QRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F   P + +V  +E+N 
Sbjct: 265 RDASIAVLRKIGVDTGGSNVQFGISPTTGRVVVIEMNP 302



 Score = 65.9 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 34/223 (15%), Positives = 87/223 (39%), Gaps = 12/223 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYV 129
           LE   +P   +   +  L+ D+ R +Q+V   G+   P+ +             I  P V
Sbjct: 654 LEANGVPVIGTSPDSIDLAEDRERFQQLVDKLGLKQPPNRIARNSEEALVLAREIGYPLV 713

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLD 188
           ++P        + ++  +  +   +  +   ++   +L+++++D  +E+   ++ D   +
Sbjct: 714 VRPSYVLGGRAMEIVYGESDLARYVRDAVKVSNDSPVLLDRFLDNAVEVDVDIIADKDGN 773

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           V    V   +       +S  +S  + P  +  +   E++R   +  + +   G+  + F
Sbjct: 774 VLIGGV--MEHIEEAGVHSGDSSCSLPPYSLSPETQAELRRQVVMLAEGLNVVGLMNTQF 831

Query: 249 LF---DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
                +     V+ LE+N +   T     P ++   G    ++
Sbjct: 832 AVQVNEAGDDIVYLLEVNPRASRT----VPFVSKAIGIPLAKI 870


>gi|289643059|ref|ZP_06475190.1| carbamoyl-phosphate synthase, large subunit [Frankia symbiont of
           Datisca glomerata]
 gi|289507103|gb|EFD28071.1| carbamoyl-phosphate synthase, large subunit [Frankia symbiont of
           Datisca glomerata]
          Length = 1131

 Score = 68.6 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 47/278 (16%), Positives = 94/278 (33%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG      L   G +V  +         D D             +V  ++   +PD    
Sbjct: 29  SGTQACRVLRSEGLRVVLVNSNPATIMTDPDIADATYVEPITPETVAKIIERERPDALLA 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111
            + G    +  +      +L+   +    + I A     D+   K +V++ G     S  
Sbjct: 89  TMGGQTALNTAMDLHAAGVLDRYGVRLIGANIDAIRAGEDRQAFKDIVAAVGGETARSAI 148

Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
               +  + +    S P V++P       G         +        + +   ++L+E+
Sbjct: 149 CTTPQECLAAAEEFSYPVVVRPSFTLGGAGSGFAHDADELRRMAADGIAASPSSEVLVEE 208

Query: 171 YVDG-IELTCGVMGDASL-DVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            V G  E    +M D +   V   ++   D           +S  V PA  +    Y+++
Sbjct: 209 SVLGWKEFELELMRDRADNVVVVCSIENVDPMGVHT----GDSVTVAPAMTLTDREYQQM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           + +A    +A+G   G     F  DP + ++  +E+N 
Sbjct: 265 RNMAIAVMRAVGVDAGGCNIQFAVDPATGRLVVIEMNP 302



 Score = 55.9 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 49/271 (18%), Positives = 102/271 (37%), Gaps = 32/271 (11%)

Query: 20  KACASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHG--NFGE---- 64
            A   AL DAG++   I         D D +  L +  L  +    V+H     GE    
Sbjct: 578 HAVM-ALSDAGYETIMINCNPETVSTDYDTADRLYVEPLTVEDVLEVVHAEQQAGELVGV 636

Query: 65  ----DGL----VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116
                G     + A L    +P   +   A  L+ D+    QV++  G+P  P  +   F
Sbjct: 637 IVQLGGQTPLGIAAPLAAAGVPIVGTEPRAIHLAEDRGLFGQVLARAGLPSPPHGVATFF 696

Query: 117 TMDS--QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
                    I  P +++P       G+ ++  +  +   + +++  +    +L+++++D 
Sbjct: 697 DEARAVAERIGYPVLVRPSYVLGGRGMEIVYDEAMLRGYIERATEISPQHPVLVDRFLD- 755

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELK-YSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
                 +  DA  D TE+ +     +  E   +S  ++  + P  +     + ++    L
Sbjct: 756 --DAVEIDVDALYDGTELYLGGVMEHIEEAGVHSGDSACALPPITLGRGELERIRESTRL 813

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             + +G RG+    +     +  ++ LE N 
Sbjct: 814 IAEGVGVRGLLNVQYAL--QADVLYVLEANP 842


>gi|260590035|ref|ZP_05855948.1| carbamoyl-phosphate synthase, large subunit [Blautia hansenii DSM
           20583]
 gi|260539547|gb|EEX20116.1| carbamoyl-phosphate synthase, large subunit [Blautia hansenii DSM
           20583]
          Length = 1065

 Score = 68.6 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 34/226 (15%), Positives = 82/226 (36%), Gaps = 18/226 (7%)

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYVIKP 132
           + +    +       + D+     ++  C +P      V        + + +  P +++P
Sbjct: 650 MGVKILGTSAENVDAAEDRELFDGILEECHIPRPKGHTVYTAEEAKKAANELGYPVLVRP 709

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192
                  G+ +   D+ +   +   +       +L+++Y+ G E+    + D      +I
Sbjct: 710 SYVLGGQGMQIAINDEDVEEYIGIINRIAQEHPILVDKYLQGKEIEVDAVCDGE----DI 765

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
            +P    +       S +S  V PA+ I     K ++       +++   G+    F+  
Sbjct: 766 LIPGIMEHIERAGIHSGDSISVYPARTISETAKKTIEEYTRRLAKSLHVLGMINIQFIV- 824

Query: 252 PLSRKVFWLEIN-----VQPGM---TPVSIFPEMAAYA-GYSFREL 288
               +V+ +E+N       P +   T + I P  A    G+  ++L
Sbjct: 825 -CGEEVYVIEVNPRSSRTVPYISKVTGIPIVPLAAKVILGHKLKDL 869



 Score = 61.3 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 43/286 (15%), Positives = 101/286 (35%), Gaps = 33/286 (11%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQID-------VDRSVG--------------LV 45
           G ++E + +   G     +L++ G +V  ++        D+ +                +
Sbjct: 21  GQAAEFDYA---GTQACRSLKEEGIEVVLLNSNPATIMTDKDIADKVYIEPLTVEVVEQL 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   KPD     L G  G +  +    +  L+   +    +       + D+   K  + 
Sbjct: 78  ILKEKPDSVLPTLGGQAGLNLAMELEERGFLKEHNVRLIGTTSETIKKAEDRQEFKDTME 137

Query: 102 SCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G P+  S++V      +   + I  P V++P       G  +   ++ +   L     
Sbjct: 138 KIGEPIAASLVVKNVEDGIAFSNKIGYPVVLRPAYTLGGSGGGIANNEEELVEILENGLR 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   ++L+E+ + G  E+   VM D++ +   I V   +       ++  +        
Sbjct: 198 LSRVGEVLVERCIAGWKEIEYEVMRDSAGN--CITVCNMENLDPVGVHTGDSIVVAPSQT 255

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +    Y+ ++  A      +G  G     +  +P S +   +E+N 
Sbjct: 256 LGDKEYQMLRTSALNIITELGITGGCNVQYALNPNSFEYCVIEVNP 301


>gi|241760250|ref|ZP_04758346.1| carbamoyl-phosphate synthase, large subunit [Neisseria flavescens
           SK114]
 gi|241319361|gb|EER55826.1| carbamoyl-phosphate synthase, large subunit [Neisseria flavescens
           SK114]
          Length = 1071

 Score = 68.6 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 29/192 (15%), Positives = 72/192 (37%), Gaps = 8/192 (4%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYVIKPL 133
            +    +   +   + D+ R ++V++  G+   P+ + +           I  P V++P 
Sbjct: 652 GVNIIGTSADSIDAAEDRERFQKVLNDLGLRQPPNRIAHNEEEALVKAEEIGYPLVVRPS 711

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEI 192
                  + V+   + +   + ++   +    +L++ ++ + IE+    + D    V   
Sbjct: 712 YVLGGRAMQVVHSAEELQKYMREAVQVSEDSPVLLDFFLNNAIEVDVDCVSDGKDVVIGG 771

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            +   +       +S  +   + P  +  +I  E++R       A+G  G+    F    
Sbjct: 772 IMQHVEQAGI---HSGDSGCSLPPYSLSEEIQDEIRRQTKAMAYALGVVGLMNVQFAV-- 826

Query: 253 LSRKVFWLEINV 264
               VF LE+N 
Sbjct: 827 QDGVVFVLEVNP 838



 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 50/278 (17%), Positives = 101/278 (36%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +              DV        ++V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYKVILVNSNPATIMTDPEMADVTYIEPIMWQTVEKIIAKERPDAILP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      +L    +    +   A   + D+ R K+ +   G+    S +
Sbjct: 89  TMGGQTALNCALDLARNGVLAKYNVELIGATEDAIDKAEDRGRFKEAMEKIGLSCPKSFV 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     + +Q  +  P +I+P       G  +            +    +   +LLIEQ
Sbjct: 149 CHTMNEALAAQEQVGFPTLIRPSFTMGGSGGGIAYNKDEFLAICERGFDASPTHELLIEQ 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            V G  E    V+ D + +   I   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SVLGWKEYEMEVVRDKADNCIIICSIEN----FDPMGVHTGDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RNASLAVLREIGVDTGGSNVQFAVNPENGEMIVIEMNP 302


>gi|111221775|ref|YP_712569.1| acetyl CoA carboxylase, biotin carboxylase subunit [Frankia alni
           ACN14a]
 gi|111149307|emb|CAJ60993.1| acetyl CoA carboxylase, biotin carboxylase subunit (partial match)
           [Frankia alni ACN14a]
          Length = 912

 Score = 68.6 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 76/221 (34%), Gaps = 17/221 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       E   + +    + A  +  DK+ +++ V+  GV V P    
Sbjct: 117 AVHPGYGFLAENAAFVRACENAGLFFIGPSVAAVEVMGDKIVARRTVAEVGVAVVPGRSS 176

Query: 114 NRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
              T D+       +  P ++KP  GG   G+ V++    +   L  +          D 
Sbjct: 177 PAMTDDAITEAAGQLGYPVLVKPSAGGGGKGMRVVRAPGEMAAALASARREASAAFGDDT 236

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           L +E+ +     +   V+ D    V  +   +        K             +     
Sbjct: 237 LFVERLIARPRHVEVQVLADTHGTVLHLGERECSLQRRHQKI----VEEAPSPLLDARTR 292

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLS-RKVFWLEINV 264
           + +   A     A+G  G    +F+    +  + +++E+N 
Sbjct: 293 ERLGAAAVAVAGAVGYVGAGTVEFILSADAPDEFYFMEMNT 333


>gi|53804795|ref|YP_113521.1| acetyl-CoA carboxylase, biotin carboxylase [Methylococcus
           capsulatus str. Bath]
 gi|53758556|gb|AAU92847.1| acetyl-CoA carboxylase, biotin carboxylase [Methylococcus
           capsulatus str. Bath]
          Length = 448

 Score = 68.6 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 40/249 (16%), Positives = 88/249 (35%), Gaps = 25/249 (10%)

Query: 27  EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
            D+   V  I +  +       + P   F   + +F E  ++Q+        +       
Sbjct: 57  RDSYLNVPAI-ISAAEVTDALAIHPGYGFLSENADFAEK-VIQS-----GFIFIGPRPET 109

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL-----ISPPYVIKPLKGGSSLGI 141
             +  DK+ + + +   G+P  P         + ++L     I  P +IK   GG   G+
Sbjct: 110 IRMMGDKVAAIEAMKKAGIPTLPGSDGPLGDDEEENLAIARRIGFPIIIKAAGGGGGRGM 169

Query: 142 IVIKKDQSIPLDLL----QSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPK 196
            V+  + S+   +     ++ +    D + +E++++    +   V+ D+  +V       
Sbjct: 170 RVVHSEASLAASIELTRSEAGAAFGNDMVYMEKFLENPRHIEFQVIADSHGNVV-----H 224

Query: 197 SDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255
                   +          PA  I      E+      A + IG  G    +FL+     
Sbjct: 225 LGERDCSTQRRHQKVVEEAPAPGITQAQRDEMGMRCVQACREIGYLGAGTFEFLY--QDG 282

Query: 256 KVFWLEINV 264
           + +++E+N 
Sbjct: 283 QFYFIEMNT 291


>gi|329120046|ref|ZP_08248716.1| carbamoyl-phosphate synthase, large subunit [Neisseria
           bacilliformis ATCC BAA-1200]
 gi|327463577|gb|EGF09895.1| carbamoyl-phosphate synthase, large subunit [Neisseria
           bacilliformis ATCC BAA-1200]
          Length = 1069

 Score = 68.6 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 29/192 (15%), Positives = 72/192 (37%), Gaps = 8/192 (4%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYVIKPL 133
            +    +   +   + D+ R ++V++  G+   P+ + +           I  P V++P 
Sbjct: 652 GVNIIGTSADSIDAAEDRERFQKVLNDLGLRQPPNRIAHNEEEALVKAEEIGYPLVVRPS 711

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEI 192
                  + V+   + +   + ++   +    +L++ ++ + IE+    + D    V   
Sbjct: 712 YVLGGRAMQVVHSAEELQKYMREAVQVSEDSPVLLDFFLNNAIEVDVDCVSDGQDVVIGG 771

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            +   +       +S  +   + P  +  +I  E++R       A+G  G+    F    
Sbjct: 772 IMQHVEQAGI---HSGDSGCSLPPYSLSEEIQDEIRRQTKAMAYALGVVGLMNVQFAV-- 826

Query: 253 LSRKVFWLEINV 264
               VF LE+N 
Sbjct: 827 QDGVVFVLEVNP 838



 Score = 65.9 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 50/278 (17%), Positives = 101/278 (36%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +              DV        ++V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYKVILVNSNPATIMTDPEMADVTYIEPIMWQTVEKIIAKERPDAILP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      +L    +    +   A   + D+ R K+ +   G+    S +
Sbjct: 89  TMGGQTALNCALDLARNGVLAKYNVELIGATEDAIDKAEDRGRFKEAMEKIGLSCPKSFV 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     + +Q  +  P +I+P       G  +            +    +   +LLIEQ
Sbjct: 149 CHTMNEALAAQEQVGFPTLIRPSFTMGGSGGGIAYNKDEFLAICERGFDASPTHELLIEQ 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            V G  E    V+ D + +   I   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SVLGWKEYEMEVVRDKNDNCIIICSIEN----FDPMGVHTGDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RNASLAVLREIGVDTGGSNVQFAVNPENGEMIVIEMNP 302


>gi|319651495|ref|ZP_08005623.1| acetyl-CoA carboxylase [Bacillus sp. 2_A_57_CT2]
 gi|317396810|gb|EFV77520.1| acetyl-CoA carboxylase [Bacillus sp. 2_A_57_CT2]
          Length = 450

 Score = 68.6 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 80/220 (36%), Gaps = 16/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     +     I +      A +    K  +++ +   GVP+ P    
Sbjct: 77  AIHPGYGFLAENADFAELCRECNIIFVGPTPEAISKMGTKDIARETMKEAGVPIVPGSNG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGDQ 165
            I      +     I  P +IK   GG   GI V + +Q +   +     ++ +      
Sbjct: 137 IIKDTEDAIQLAEKIEYPVIIKATAGGGGKGIRVARTEQELIKGITITQQEALTAFGNPG 196

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+Y++    +   V+ D   +   +            K             +  +  
Sbjct: 197 VYIEKYIEDFRHVEIQVLADNYGNTVHLGERDCSIQRRLQKLL----EETPSPALDGETR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +E+   A  A +A+   G    +F++D  +RK +++E+N 
Sbjct: 253 EEMGNAAVKAAKAVDYTGAGTIEFIYDYQNRKFYFMEMNT 292


>gi|311114642|ref|YP_003985863.1| carbamoyl-phosphate synthase large subunit [Gardnerella vaginalis
           ATCC 14019]
 gi|310946136|gb|ADP38840.1| carbamoyl-phosphate synthase, large subunit [Gardnerella vaginalis
           ATCC 14019]
          Length = 1131

 Score = 68.6 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 39/244 (15%), Positives = 93/244 (38%), Gaps = 14/244 (5%)

Query: 32  KVSQIDVDRS--VGLVLAHLKPDLAFNVLHGNFGEDGLV----QAILELLEIPYTHSGIL 85
             + I+   +  +  ++A  KPD     L G    +  +      IL+   +    + + 
Sbjct: 62  DATYIEPIDTAILERIIAKEKPDALLPTLGGQTALNAAMDLGRAGILKKYNVELIGASLE 121

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIV 143
           A     D+   K+VV   G     S + +      +    +  P V++P      LG  +
Sbjct: 122 AIDRGEDRELFKKVVEKAGAESAKSFIAHSIEEVDKIVETLGYPVVVRPSFTMGGLGSGI 181

Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSY 202
               + +         ++  +++LIE+ ++G  E    +M D+  +V  +   ++     
Sbjct: 182 AHNQEELHRIAGAGIHYSPTNEVLIEEGIEGWKEFELELMRDSKDNVVVVCPIENVD--- 238

Query: 203 ELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWL 260
            +   + +S  V P   +    Y++++ +     + +G   G     F  +P + ++  +
Sbjct: 239 PVGVHTGDSITVAPCFTLTDREYQKMRDIGIAIIRGVGVDTGGCNIQFAINPRTGRIIVI 298

Query: 261 EINV 264
           E+N 
Sbjct: 299 EMNP 302



 Score = 56.3 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 36/233 (15%), Positives = 73/233 (31%), Gaps = 29/233 (12%)

Query: 67  LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTMDSQHLI 124
            + A L+   +P   +   A  L+ ++    +V+   G+        L      D+ H I
Sbjct: 651 SLAARLKAAGVPILGTTPEAIDLAENRELFGEVLRQEGMNAPRYGTALSLEEAKDAAHAI 710

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
             P +++P       G+ ++  D  +   + ++      D +     V G   +  ++  
Sbjct: 711 GYPVLVRPSYVLGGRGMEIVYDDAQLAKYVDRALQEAQADTV-----VSGRLPSPLLIDK 765

Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK--------------IPLDIYKEVQRL 230
              D  EI V     Y     Y      HV  A               +  D  + ++  
Sbjct: 766 FLQDAIEIDV--DALYDGNELYIGGIMEHVEEAGVHSGDAACTLPPSTLSDDQIRRLREG 823

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283
                +    RG+    + F      ++ +E N +   T     P  +   G 
Sbjct: 824 TLSIARGCSVRGLINVQYAFMA--NTLYVIEANPRASRT----VPFASKATGV 870


>gi|225024768|ref|ZP_03713960.1| hypothetical protein EIKCOROL_01655 [Eikenella corrodens ATCC
           23834]
 gi|224942475|gb|EEG23684.1| hypothetical protein EIKCOROL_01655 [Eikenella corrodens ATCC
           23834]
          Length = 1069

 Score = 68.6 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 29/192 (15%), Positives = 72/192 (37%), Gaps = 8/192 (4%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYVIKPL 133
            +    +   +   + D+ R ++V++  G+   P+ + +           I  P V++P 
Sbjct: 652 GVNIIGTSADSIDAAEDRERFQKVLNDLGLRQPPNRIAHNEEEALVKAEEIGYPLVVRPS 711

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEI 192
                  + V+   + +   + ++   +    +L++ ++ + IE+    + D    V   
Sbjct: 712 YVLGGRAMQVVHSAEELQKYMREAVQVSEDSPVLLDFFLNNAIEVDVDCVSDGKDVVIGG 771

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            +   +       +S  +   + P  +  +I  E++R       A+G  G+    F    
Sbjct: 772 IMQHVEQAGI---HSGDSGCSLPPYSLSEEIQDEIRRQTKAMAYALGVVGLMNVQFAV-- 826

Query: 253 LSRKVFWLEINV 264
               VF LE+N 
Sbjct: 827 QDGVVFVLEVNP 838



 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 50/278 (17%), Positives = 101/278 (36%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +              DV        ++V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYKVILVNSNPATIMTDPEMADVTYIEPIMWQTVEKIIAKERPDAILP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      +L    +    +   A   + D+ R K+ +   G+    S +
Sbjct: 89  TMGGQTALNCALDLARNGVLAKYNVELIGATEDAIDKAEDRGRFKEAMEKIGLSCPKSFV 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     + +Q  +  P +I+P       G  +            +    +   +LLIEQ
Sbjct: 149 CHTMNEALAAQEQVGFPTLIRPSFTMGGSGGGIAYNKDEFLAICERGFDASPTHELLIEQ 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            V G  E    V+ D + +   I   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SVLGWKEYEMEVVRDKADNCIIICSIEN----FDPMGVHTGDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RNASLAVLREIGVDTGGSNVQFAVNPENGEMIVIEMNP 302


>gi|222612694|gb|EEE50826.1| hypothetical protein OsJ_31236 [Oryza sativa Japonica Group]
          Length = 2214

 Score = 68.6 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 40/230 (17%), Positives = 76/230 (33%), Gaps = 29/230 (12%)

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--------- 110
           G+  E+  +   L+   I +      A A   DK+ S  +  + GVP  P          
Sbjct: 131 GHASENPELPDALKEKGIIFLGPPSAAMAALGDKIGSSLIAQAAGVPTLPWSGSHVKIPP 190

Query: 111 ---------------ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
                          +      + S  ++  P +IK   GG   GI  +  D  +     
Sbjct: 191 ESCNSIPEEMYRSACVSTTEEAVASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFK 250

Query: 156 QSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHV 214
           Q      G  + I +       L   ++ D   +V  +            K        V
Sbjct: 251 QVQGEVPGSPIFIMKVASQSRHLEVQLLCDKHGNVAALHSRDCSVQRRHQKIIEEGPITV 310

Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            P++   ++ +  +RLA   H      G +  ++L+   + + ++LE+N 
Sbjct: 311 APSETVKELEQAARRLAKCVHYV----GAATVEYLYSMETGEYYFLELNP 356


>gi|188996524|ref|YP_001930775.1| MGS domain protein [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188931591|gb|ACD66221.1| MGS domain protein [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 530

 Score = 68.6 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 26/199 (13%), Positives = 79/199 (39%), Gaps = 14/199 (7%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYV 129
           LE L IP   +   +  ++ D+ R + ++   G+    S +             I  P +
Sbjct: 97  LEKLNIPILGTSPESIDIAEDRERFRDLIIKLGIKQPESAIAKSKDEAVKVAQEIGFPVL 156

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG---IELTCGVMGDAS 186
           ++P        + ++   + +   + ++        +LI++++DG   +++ C   G+  
Sbjct: 157 VRPSYVLGGRAMRLVYDMEELLKYIEEAVMVTEDRPILIDKFLDGSIEVDVDCVCDGEDV 216

Query: 187 L-DVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
           L       + ++  +S        ++T +    +P ++  +++  + +  +A+   G+  
Sbjct: 217 LVGAVMEHIEEAGIHS------GDSATCIPHYTLPDEVVIKIKEQSRMLAKALNTIGLIN 270

Query: 246 SDFLFDPLSRKVFWLEINV 264
             +       +++ +E N 
Sbjct: 271 IQYAI--KDNEIYIIEANP 287


>gi|329962782|ref|ZP_08300683.1| ATP-grasp domain protein [Bacteroides fluxus YIT 12057]
 gi|328529437|gb|EGF56345.1| ATP-grasp domain protein [Bacteroides fluxus YIT 12057]
          Length = 403

 Score = 68.6 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 27/200 (13%), Positives = 65/200 (32%), Gaps = 19/200 (9%)

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCG--VPVCPSILVNRFTMDSQHLISPPYVI 130
           E + +P          L  +K R +  ++  G  VP           +   +    P ++
Sbjct: 87  EQMGLPAFGPYESVCIL-QNKDRFRNFLTQHGFNVPKAKGFSSIEEALSETYWYPWPVIV 145

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL---TCGVMGDASL 187
           KP     S G+  +   + +   L  +   +   ++++E++++       T     D  L
Sbjct: 146 KPTDAAGSKGVTRVDCLRELKPALEYAFEHSMSKRVIVEEFIEKQGCSSDTDSFSVDGEL 205

Query: 188 DVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS--- 244
                +  +   +  +       S +  P+    +   E+        + +G R      
Sbjct: 206 KFVSYSAQR---FDADAANPYTPSAYSWPSTFTAEQEAELTSELQRLLKLLGMRTSIYNV 262

Query: 245 --RSDFLFDPLSRKVFWLEI 262
             R       L+ K + +E+
Sbjct: 263 ETRI-----GLNGKPYIMEV 277


>gi|329113284|ref|ZP_08242067.1| Biotin carboxylase [Acetobacter pomorum DM001]
 gi|326697425|gb|EGE49083.1| Biotin carboxylase [Acetobacter pomorum DM001]
          Length = 447

 Score = 68.6 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 77/220 (35%), Gaps = 18/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+      +E   + +         +  DK+ +K  +   GVP+ P    
Sbjct: 77  AIHPGYGFLSENADFAETVEAHGLTFIGPTAEHIRMMGDKITAKTTMQMLGVPLVPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSWNHGDQ 165
            +       +    +  P +IK   GG   G+ V +    +     +   ++ +    D 
Sbjct: 137 ELTSLEEAREVADKVGYPVLIKAAAGGGGRGMKVAQTADDLEDAWKMARAEARAAFGNDA 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+Y+D    +   ++GD   +V               K          PA +  +  
Sbjct: 197 VYLEKYMDRPRHIELQILGDNYGNVVHFGERDCSLQRRHQKLLEEAG---SPA-LTAEQR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             + + A  A   +G R     +FL+     +  ++E+N 
Sbjct: 253 DAIGQTATQALSKMGYRNAGTLEFLY--QDGQFCFIEMNT 290


>gi|325266826|ref|ZP_08133497.1| carbamoyl-phosphate synthase, large subunit [Kingella denitrificans
           ATCC 33394]
 gi|324981567|gb|EGC17208.1| carbamoyl-phosphate synthase, large subunit [Kingella denitrificans
           ATCC 33394]
          Length = 1071

 Score = 68.6 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 29/192 (15%), Positives = 72/192 (37%), Gaps = 8/192 (4%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYVIKPL 133
            +    +   +   + D+ R ++V++  G+   P+ + +           I  P V++P 
Sbjct: 652 GVNIIGTSADSIDAAEDRERFQKVLNDLGLRQPPNRIAHNEEEALVKAEEIGYPLVVRPS 711

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEI 192
                  + V+   + +   + ++   +    +L++ ++ + IE+    + D    V   
Sbjct: 712 YVLGGRAMQVVHSAEELQKYMREAVQVSEDSPVLLDFFLNNAIEVDVDCVSDGKDVVIGG 771

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            +   +       +S  +   + P  +  +I  E++R       A+G  G+    F    
Sbjct: 772 IMQHVEQAGI---HSGDSGCSLPPYSLSEEIQDEIRRQTKAMAYALGVVGLMNVQFAV-- 826

Query: 253 LSRKVFWLEINV 264
               VF LE+N 
Sbjct: 827 QDGVVFVLEVNP 838



 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 50/278 (17%), Positives = 101/278 (36%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +              DV        ++V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYKVILVNSNPATIMTDPEMADVTYIEPIMWQTVEKIIAKERPDAILP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      +L    +    +   A   + D+ R K+ +   G+    S +
Sbjct: 89  TMGGQTALNCALDLARNGVLAKYNVELIGATEDAIDKAEDRGRFKEAMEKIGLSCPKSFV 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     + +Q  +  P +I+P       G  +            +    +   +LLIEQ
Sbjct: 149 CHTMNEALAAQEQVGFPTLIRPSFTMGGSGGGIAYNKDEFLAICERGFDASPTHELLIEQ 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            V G  E    V+ D + +   I   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SVLGWKEYEMEVVRDKADNCIIICSIEN----FDPMGVHTGDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RNASLAVLREIGVDTGGSNVQFAVNPENGEMIVIEMNP 302


>gi|308234824|ref|ZP_07665561.1| carbamoyl-phosphate synthase large chain [Gardnerella vaginalis
           ATCC 14018]
          Length = 582

 Score = 68.6 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 39/244 (15%), Positives = 93/244 (38%), Gaps = 14/244 (5%)

Query: 32  KVSQIDVDRS--VGLVLAHLKPDLAFNVLHGNFGEDGLV----QAILELLEIPYTHSGIL 85
             + I+   +  +  ++A  KPD     L G    +  +      IL+   +    + + 
Sbjct: 62  DATYIEPIDTAILERIIAKEKPDALLPTLGGQTALNAAMDLGRAGILKKYNVELIGASLE 121

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIV 143
           A     D+   K+VV   G     S + +      +    +  P V++P      LG  +
Sbjct: 122 AIDRGEDRELFKKVVEKAGAESAKSFIAHSIEEVDKIVETLGYPVVVRPSFTMGGLGSGI 181

Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSY 202
               + +         ++  +++LIE+ ++G  E    +M D+  +V  +   ++     
Sbjct: 182 AHNQEELHRIAGAGIHYSPTNEVLIEEGIEGWKEFELELMRDSKDNVVVVCPIENVD--- 238

Query: 203 ELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWL 260
            +   + +S  V P   +    Y++++ +     + +G   G     F  +P + ++  +
Sbjct: 239 PVGVHTGDSITVAPCFTLTDREYQKMRDIGIAIIRGVGVDTGGCNIQFAINPRTGRIIVI 298

Query: 261 EINV 264
           E+N 
Sbjct: 299 EMNP 302


>gi|300113256|ref|YP_003759831.1| carbamoyl-phosphate synthase large subunit [Nitrosococcus watsonii
           C-113]
 gi|299539193|gb|ADJ27510.1| carbamoyl-phosphate synthase, large subunit [Nitrosococcus watsonii
           C-113]
          Length = 1073

 Score = 68.6 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 48/278 (17%), Positives = 100/278 (35%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     +L++ G++V  +         D              ++V  ++   +PD    
Sbjct: 29  SGAQACKSLKEEGYRVILVNSNPATIMTDPGLADATYIEPLTWKTVARIIEKERPDALLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +    + ILE   +    +   A   + D+   +Q +   G+ +  S +
Sbjct: 89  TMGGQTALNCALDLAREGILERYGVEMIGANQEAINKAEDRDLFRQAMQKIGLDMPRSAI 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +       +Q  +  P VI+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHSLEEAQQAQRDLGFPIVIRPSFTLGGSGGGIAYNREEFVEICERGLDLSPSSELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            V G  E    V+ D+  +   I   ++ D           +S  V PA+ +    Y+ +
Sbjct: 209 SVLGWKEFEMEVVRDSKDNCIIICAIENLDPMGVHT----GDSITVAPAQTLTDKEYQVM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  A    + IG   G S   F  +P   ++  +E+N 
Sbjct: 265 RDAAIAVLREIGVETGGSNVQFAVNPEDGRLIIIEMNP 302



 Score = 62.1 bits (150), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 25/197 (12%), Positives = 74/197 (37%), Gaps = 10/197 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           LE    P   +   +  L+ D+ R ++++   G+   P+         +     I  P V
Sbjct: 653 LEAAGAPIIGTSPDSIDLAEDRERFQRLIEKLGLKQPPNRTARTQEEALRLAAEIGYPLV 712

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTC-GVMGDASL 187
           ++P        + ++     +   + ++ S ++   +L+++++D   E+    +     +
Sbjct: 713 VRPSYVLGGRAMEIVYTADELARYMKEAVSVSNDSPVLLDRFLDEATEVDVDAICDGGQV 772

Query: 188 DVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
            V  I     +       +S  ++  + P  +   +   ++       + +   G+  + 
Sbjct: 773 MVGGI----MEHIEQAGVHSGDSACALPPFSLNAAVQNRLREQVCNMARELKVVGLMNTQ 828

Query: 248 FLFDPLSRKVFWLEINV 264
           F     + +++ LE+N 
Sbjct: 829 FAI--QANEIYVLEVNP 843


>gi|298370199|ref|ZP_06981515.1| carbamoyl-phosphate synthase, large subunit [Neisseria sp. oral
           taxon 014 str. F0314]
 gi|298281659|gb|EFI23148.1| carbamoyl-phosphate synthase, large subunit [Neisseria sp. oral
           taxon 014 str. F0314]
          Length = 1071

 Score = 68.6 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 29/192 (15%), Positives = 72/192 (37%), Gaps = 8/192 (4%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYVIKPL 133
            +    +   +   + D+ R ++V++  G+   P+ + +           I  P V++P 
Sbjct: 652 GVNIIGTSADSIDAAEDRERFQKVLNDLGLRQPPNRIAHNEEEALVKAEEIGYPLVVRPS 711

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEI 192
                  + V+   + +   + ++   +    +L++ ++ + IE+    + D    V   
Sbjct: 712 YVLGGRAMQVVHSAEELQKYMREAVQVSEDSPVLLDFFLNNAIEVDVDCVSDGKDVVIGG 771

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            +   +       +S  +   + P  +  +I  E++R       A+G  G+    F    
Sbjct: 772 IMQHVEQAGI---HSGDSGCSLPPYSLSEEIQDEIRRQTKAMAYALGVVGLMNVQFAV-- 826

Query: 253 LSRKVFWLEINV 264
               VF LE+N 
Sbjct: 827 QDGVVFVLEVNP 838



 Score = 65.9 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 50/278 (17%), Positives = 101/278 (36%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +              DV        ++V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYKVILVNSNPATIMTDPEMADVTYIEPIMWQTVEKIIAKERPDAILP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      +L    +    +   A   + D+ R K+ +   G+    S +
Sbjct: 89  TMGGQTALNCALDLARNGVLAKYNVELIGATEDAIDKAEDRGRFKEAMEKIGLSCPKSFV 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     + +Q  +  P +I+P       G  +            +    +   +LLIEQ
Sbjct: 149 CHTMNEALAAQEQVGFPTLIRPSFTMGGSGGGIAYNKDEFLAICERGFDASPTHELLIEQ 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            V G  E    V+ D + +   I   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SVLGWKEYEMEVVRDKNDNCIIICSIEN----FDPMGVHTGDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RNASLAVLREIGVDTGGSNVQFAVNPENGEMIVIEMNP 302


>gi|294669529|ref|ZP_06734596.1| hypothetical protein NEIELOOT_01428 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291308442|gb|EFE49685.1| hypothetical protein NEIELOOT_01428 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 1071

 Score = 68.6 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 29/192 (15%), Positives = 72/192 (37%), Gaps = 8/192 (4%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYVIKPL 133
            +    +   +   + D+ R ++V++  G+   P+ + +           I  P V++P 
Sbjct: 652 GVNIIGTSADSIDAAEDRERFQKVLNDLGLRQPPNRIAHNEEEALVKAEEIGYPLVVRPS 711

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEI 192
                  + V+   + +   + ++   +    +L++ ++ + IE+    + D    V   
Sbjct: 712 YVLGGRAMQVVHSAEELQKYMREAVQVSEDSPVLLDFFLNNAIEVDVDCVSDGKDVVIGG 771

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            +   +       +S  +   + P  +  +I  E++R       A+G  G+    F    
Sbjct: 772 IMQHVEQAGI---HSGDSGCSLPPYSLSEEIQDEIRRQTKAMAYALGVVGLMNVQFAV-- 826

Query: 253 LSRKVFWLEINV 264
               VF LE+N 
Sbjct: 827 QDGVVFVLEVNP 838



 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 50/278 (17%), Positives = 101/278 (36%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +              DV        ++V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYKVILVNSNPATIMTDPEMADVTYIEPIMWQTVEKIIAKERPDAILP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      +L    +    +   A   + D+ R K+ +   G+    S +
Sbjct: 89  TMGGQTALNCALDLARNGVLAKYNVELIGATEDAIDKAEDRGRFKEAMEKIGLSCPRSFV 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     + +Q  +  P +I+P       G  +            +    +   +LLIEQ
Sbjct: 149 CHTMNEALAAQEQVGFPTLIRPSFTMGGSGGGIAYNKDEFLAICERGFDASPTHELLIEQ 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            V G  E    V+ D + +   I   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SVLGWKEYEMEVVRDKADNCIIICSIEN----FDPMGVHTGDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RNASLAVLREIGVDTGGSNVQFAVNPENGEMIVIEMNP 302


>gi|255068592|ref|ZP_05320447.1| carbamoyl-phosphate synthase, large subunit [Neisseria sicca ATCC
           29256]
 gi|255047150|gb|EET42614.1| carbamoyl-phosphate synthase, large subunit [Neisseria sicca ATCC
           29256]
          Length = 1071

 Score = 68.6 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 29/192 (15%), Positives = 72/192 (37%), Gaps = 8/192 (4%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYVIKPL 133
            +    +   +   + D+ R ++V++  G+   P+ + +           I  P V++P 
Sbjct: 652 GVNIIGTSADSIDAAEDRERFQKVLNDLGLRQPPNRIAHNEEEALVKAEEIGYPLVVRPS 711

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEI 192
                  + V+   + +   + ++   +    +L++ ++ + IE+    + D    V   
Sbjct: 712 YVLGGRAMQVVHSAEELQKYMREAVQVSEDSPVLLDFFLNNAIEVDVDCVSDGKDVVIGG 771

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            +   +       +S  +   + P  +  +I  E++R       A+G  G+    F    
Sbjct: 772 IMQHVEQAGI---HSGDSGCSLPPYSLSEEIQDEIRRQTKAMAYALGVVGLMNVQFAV-- 826

Query: 253 LSRKVFWLEINV 264
               VF LE+N 
Sbjct: 827 QDGVVFVLEVNP 838



 Score = 65.5 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 49/278 (17%), Positives = 101/278 (36%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +              DV        +++  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYKVILVNSNPATIMTDPEMADVTYIEPIMWQTMEKIIAKERPDAILP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      +L    +    +   A   + D+ R K+ +   G+    S +
Sbjct: 89  TMGGQTALNCALDLARNGVLAKYNVELIGATEDAIDKAEDRGRFKEAMEKIGLSCPKSFV 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     + +Q  +  P +I+P       G  +            +    +   +LLIEQ
Sbjct: 149 CHTMNEALAAQEQVGFPTLIRPSFTMGGSGGGIAYNKDEFLAICERGFDASPTHELLIEQ 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            V G  E    V+ D + +   I   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SVLGWKEYEMEVVRDKNDNCIIICSIEN----FDPMGVHTGDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RNASLAVLREIGVDTGGSNVQFAVNPENGEMIVIEMNP 302


>gi|288940453|ref|YP_003442693.1| carbamoyl-phosphate synthase large subunit [Allochromatium vinosum
           DSM 180]
 gi|288895825|gb|ADC61661.1| carbamoyl-phosphate synthase, large subunit [Allochromatium vinosum
           DSM 180]
          Length = 1069

 Score = 68.6 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 34/237 (14%), Positives = 90/237 (37%), Gaps = 17/237 (7%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYV 129
           LE   +P   +   +  L+ D+ R +Q++   G+   P+          +    I  P V
Sbjct: 653 LEAAGVPIIGTTPDSIDLAEDRERFQQLIQELGLRQPPNATARSEDEAVERAAAIGYPLV 712

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  +  +   + ++   ++   +L+++++ D IE+    + D +  
Sbjct: 713 VRPSYVLGGRAMEIVYDETDLKRYMREAVRVSNESPVLLDRFLDDAIEVDVDAICDGNEV 772

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           +    +   +       +S  ++  + P  +   I   ++       +A+   G+  + F
Sbjct: 773 LIGGIMEHIEQAGV---HSGDSACSLPPYTLSPAIQDRMREQMVKMARALNVVGLMNAQF 829

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM-----VEDASCLR 300
                  ++F LE+N +   T     P ++   G    ++         +E+  C R
Sbjct: 830 AI--KGDEIFILEVNPRASRT----VPFVSKAIGVPLAKVAARCMAGRSLEEQGCRR 880



 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 48/278 (17%), Positives = 101/278 (36%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D +            R++  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPVTWRALASIIEQERPDALLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +    + +LE   +    +   A   + D+   +Q +   G+ +  S +
Sbjct: 89  TMGGQTALNCALDLVREGVLEKFGVELIGASREAIDKAEDRDLFRQAMRKIGLDMPRSAI 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     +  Q  I  P +I+P       G  +    +       +    +   +LLIE+
Sbjct: 149 AHSLEEAIQVQAPIGFPTIIRPSFTMGGSGGGIAYNQEEFEEICRRGLDLSPTKELLIEE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            V G  E    V+ D + +   I   ++ D           +S  V PA+ +    Y+ +
Sbjct: 209 SVLGWKEYEMEVVRDHADNCIIICSIENLDPMGVHT----GDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RNASIAVLREIGVDTGGSNVQFAINPENGRMIVIEMNP 302


>gi|296138760|ref|YP_003646003.1| carbamoyl-phosphate synthase L chain ATP- binding protein
           [Tsukamurella paurometabola DSM 20162]
 gi|296026894|gb|ADG77664.1| Carbamoyl-phosphate synthase L chain ATP- binding protein
           [Tsukamurella paurometabola DSM 20162]
          Length = 602

 Score = 68.6 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 72/222 (32%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLV-QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            +H  +G   E+    QA+L+   + +      +     DK+ ++ +      P+ P   
Sbjct: 84  AVHPGYGFLSENADFAQAVLD-AGLTWIGPSPSSIRDLGDKVTARHIAERANAPMAPGTK 142

Query: 113 VNRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL----DLLQSSSWNHGD 164
                 D           P  IK   GG   G+ V      IP        ++ +     
Sbjct: 143 DPVKDADEVVAFAKEYGVPVAIKAAFGGGGRGMKVAYTIDEIPELFESATREAVAAFGRG 202

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
           +  +E+Y+D    +   V+ D   +V       +      L+          PA  +  +
Sbjct: 203 ECFVERYLDKARHVEAQVIADQHGNVVV-----AGTRDCSLQRRFQKLVEEAPAPFLTDE 257

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
               + + A    +  G  G    +FL       V +LE+N 
Sbjct: 258 QRARIHQSAKDICREAGYYGAGTVEFLV-AADGLVSFLEVNT 298


>gi|224014470|ref|XP_002296897.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220968277|gb|EED86625.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 1236

 Score = 68.6 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 76/221 (34%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E        E   I +    +       DK +++++     V V P    
Sbjct: 129 AIHPGYGFLSESAEFAQACEDNGITFVGPSVENLVTFGDKTKARELAIKADVSVVPGTSE 188

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGDQ 165
            +      +        P +IK  KGG   G+ V+ K + +         ++ +      
Sbjct: 189 PLTTTEAAVAFVEEYGLPVIIKAAKGGGGKGMRVVNKKEDLIPLFEAASSEALASFGDGG 248

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDI 223
             +E+YV     +   V+GD   +V  +           ++        + PA    +++
Sbjct: 249 CFVERYVTNAKHVEVQVIGDGKGNVVHLWE-----RDCSVQRRHQKIVEIAPAVHHSMEV 303

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            K V   A    +A   +     +FL D   R  +++E+N 
Sbjct: 304 RKAVLEDALKITKACNYKNAGTVEFLVDDQGRH-YFMEVNP 343


>gi|83309801|ref|YP_420065.1| carbamoyl phosphate synthase large subunit [Magnetospirillum
           magneticum AMB-1]
 gi|82944642|dbj|BAE49506.1| Carbamoylphosphate synthase large subunit [Magnetospirillum
           magneticum AMB-1]
          Length = 1085

 Score = 68.6 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 83/220 (37%), Gaps = 12/220 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           LE   IP   +   +  L+ D+ R ++++   G+    +         +     I  P V
Sbjct: 663 LEQAGIPILGTSPDSIDLAEDRERFQKMLHQLGLKQPANGTARSLEEAIKVAEKIGYPVV 722

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           I+P        + ++   +++   ++++   +  D +LI+ Y+ D IE+    + D +  
Sbjct: 723 IRPSFVLGGRAMQIVYDHEALERYMVEAVKVSGDDPVLIDYYLKDAIEVDVDALCDGNQV 782

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                +   +       +S  ++  + P  +      E++R      +A+   G+    +
Sbjct: 783 YVAGIMQHIEEAGI---HSGDSACSLPPYSLDKATIAELERQTAAMAKALNVVGLMNCQY 839

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
                   ++ LE+N +   T     P +A   G    ++
Sbjct: 840 AI--KDGDIYILEVNPRASRT----VPFVAKATGVPIAKI 873



 Score = 54.7 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 45/278 (16%), Positives = 97/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL+D G++V  +         D                V  ++   +PD    
Sbjct: 29  SGVQACKALKDEGYRVILVNSNPATIMTDPGLADATYIEPITPEIVAKIIEKERPDALLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  ++     ILE   +    +     A + D++  +  +   G+    S +
Sbjct: 89  TMGGQTALNTAMKLADMGILEKFGVEMIAAKRDVIAKAEDRLLFRDAMDKIGLESPKSRM 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           V   +   ++   +  P +I+P    +  G  +          +    + +   ++L+E+
Sbjct: 149 VKTLQEAREALDFVGLPAIIRPSFTLAGTGGGIAYNVAEYEHIVSGGLAASPVHEVLVEE 208

Query: 171 YVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEV 227
            V G  E    V+ D   + +   ++   D           +S  V PA  +    Y+ +
Sbjct: 209 SVLGWKEYEMEVVRDKKDNCIIICSIENVDPMGVHT----GDSITVAPALTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P   ++  +E+N 
Sbjct: 265 RNASLAVLREIGVDTGGSNVQFAVNPKDGRMTVIEMNP 302


>gi|326570906|gb|EGE20930.1| carbamoyl-phosphate synthase, large subunit [Moraxella catarrhalis
           BC7]
          Length = 1078

 Score = 68.6 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 31/196 (15%), Positives = 73/196 (37%), Gaps = 8/196 (4%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYV 129
           LE   +P   +   A   + D+ R  Q+++   +    + +V            +  P V
Sbjct: 655 LEQAGVPIIGTSPDAIDRAEDRERFLQMINKLNLRQPNNSIVKSSEEGIREAAKVGYPLV 714

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  +  +   L  +   +H   +L++ ++ D IE+    + D    
Sbjct: 715 VRPSYVLGGRAMEIVYNEDELKRYLRDAVQASHEAPVLLDHFLDDAIEVDVDCVSDGKEV 774

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           V    +   +       +S  ++  + P  +  DI  +++R      + +G  G+    F
Sbjct: 775 VIGGIMQHIEQAGV---HSGDSACSIPPYSLSDDIQDDMRRQTVAMAKELGVVGLMNVQF 831

Query: 249 LFDPLSRKVFWLEINV 264
                   V+ LE+N 
Sbjct: 832 AI--KGETVYVLEVNP 845



 Score = 58.2 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 94/278 (33%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G++V  +         D              ++V  ++A  +PD    
Sbjct: 29  SGAQACKALKEEGYRVILVNSNPATIMTDPSMADATYIEPITWQTVEQIIAKERPDAILP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      +L         +   A   + D+    + +   G+    + +
Sbjct: 89  TMGGQTALNCALDLDKHGVLAKYGCELIGATKEAIEKAEDRELFDKAMKKIGLECPKAEI 148

Query: 113 VNRFTMDS--QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                     Q  +  P +I+P       G  +    +       +    +   QLLI++
Sbjct: 149 AQSMDDAFAIQAKVGFPCIIRPSFTMGGSGGGIAYNREEFIEICERGFDLSPTHQLLIDE 208

Query: 171 YVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D   + +   ++   D           +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKKDNCIIVCSIENFDPMGVHT----GDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RNASIAVLREIGVETGGSNVQFGINPKTGRMVVIEMNP 302


>gi|326562018|gb|EGE12348.1| carbamoyl-phosphate synthase, large subunit [Moraxella catarrhalis
           103P14B1]
 gi|326574513|gb|EGE24455.1| carbamoyl-phosphate synthase, large subunit [Moraxella catarrhalis
           101P30B1]
 gi|326575899|gb|EGE25822.1| carbamoyl-phosphate synthase, large subunit [Moraxella catarrhalis
           CO72]
          Length = 1078

 Score = 68.6 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 31/196 (15%), Positives = 73/196 (37%), Gaps = 8/196 (4%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYV 129
           LE   +P   +   A   + D+ R  Q+++   +    + +V            +  P V
Sbjct: 655 LEQAGVPIIGTSPDAIDRAEDRERFLQMINKLNLRQPNNSIVKSSEEGIREAAKVGYPLV 714

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  +  +   L  +   +H   +L++ ++ D IE+    + D    
Sbjct: 715 VRPSYVLGGRAMEIVYNEDELKRYLRDAVQASHEAPVLLDHFLDDAIEVDVDCVSDGKEV 774

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           V    +   +       +S  ++  + P  +  DI  +++R      + +G  G+    F
Sbjct: 775 VIGGIMQHIEQAGV---HSGDSACSIPPYSLSDDIQDDMRRQTVAMAKELGVVGLMNVQF 831

Query: 249 LFDPLSRKVFWLEINV 264
                   V+ LE+N 
Sbjct: 832 AI--KGETVYVLEVNP 845



 Score = 57.8 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 94/278 (33%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G++V  +         D              ++V  ++A  +PD    
Sbjct: 29  SGAQACKALKEEGYRVILVNSNPATIMTDPSMADATYIEPITWQTVEQIIAKERPDAILP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      +L         +   A   + D+    + +   G+    + +
Sbjct: 89  TMGGQTALNCALDLDKHGVLAKYGCELIGATKEAIEKAEDRELFDKAMKKIGLECPKAEI 148

Query: 113 VNRFTMDS--QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                     Q  +  P +I+P       G  +    +       +    +   QLLI++
Sbjct: 149 AQSMDDAFAIQAKVGFPCIIRPSFTMGGSGGGIAYNREEFIEICERGFDLSPTHQLLIDE 208

Query: 171 YVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D   + +   ++   D           +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKKDNCIIVCSIENFDPMGVHT----GDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RNASIAVLREIGVETGGSNVQFGINPKTGRMVVIEMNP 302


>gi|326559682|gb|EGE10093.1| carbamoyl-phosphate synthase, large subunit [Moraxella catarrhalis
           46P47B1]
 gi|326560323|gb|EGE10711.1| carbamoyl-phosphate synthase, large subunit [Moraxella catarrhalis
           7169]
 gi|326566358|gb|EGE16508.1| carbamoyl-phosphate synthase, large subunit [Moraxella catarrhalis
           BC1]
 gi|326570168|gb|EGE20213.1| carbamoyl-phosphate synthase, large subunit [Moraxella catarrhalis
           BC8]
          Length = 1078

 Score = 68.6 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 31/196 (15%), Positives = 73/196 (37%), Gaps = 8/196 (4%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYV 129
           LE   +P   +   A   + D+ R  Q+++   +    + +V            +  P V
Sbjct: 655 LEQAGVPIIGTSPDAIDRAEDRERFLQMINKLNLRQPNNSIVKSSEEGIREAAKVGYPLV 714

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  +  +   L  +   +H   +L++ ++ D IE+    + D    
Sbjct: 715 VRPSYVLGGRAMEIVYNEDELKRYLRDAVQASHEAPVLLDHFLDDAIEVDVDCVSDGKEV 774

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           V    +   +       +S  ++  + P  +  DI  +++R      + +G  G+    F
Sbjct: 775 VIGGIMQHIEQAGV---HSGDSACSIPPYSLSDDIQDDMRRQTVAMAKELGVVGLMNVQF 831

Query: 249 LFDPLSRKVFWLEINV 264
                   V+ LE+N 
Sbjct: 832 AI--KGETVYVLEVNP 845



 Score = 58.2 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 94/278 (33%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G++V  +         D              ++V  ++A  +PD    
Sbjct: 29  SGAQACKALKEEGYRVILVNSNPATIMTDPSMADATYIEPITWQTVEQIIAKERPDAILP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      +L         +   A   + D+    + +   G+    + +
Sbjct: 89  TMGGQTALNCALDLDKHGVLAKYGCELIGATKEAIEKAEDRELFDKAMKKIGLECPKAEI 148

Query: 113 VNRFTMDS--QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                     Q  +  P +I+P       G  +    +       +    +   QLLI++
Sbjct: 149 AQSMDDAFAIQAKVGFPCIIRPSFTMGGSGGGIAYNREEFIEICERGFDLSPTHQLLIDE 208

Query: 171 YVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D   + +   ++   D           +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKKDNCIIVCSIENFDPMGVHT----GDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RNASIAVLREIGVETGGSNVQFGINPKTGRMVVIEMNP 302


>gi|313904390|ref|ZP_07837767.1| acetyl-CoA carboxylase, biotin carboxylase [Eubacterium
           cellulosolvens 6]
 gi|313470726|gb|EFR66051.1| acetyl-CoA carboxylase, biotin carboxylase [Eubacterium
           cellulosolvens 6]
          Length = 461

 Score = 68.6 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 34/221 (15%), Positives = 71/221 (32%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+       E   I +            DK R++ ++   GVPV P    
Sbjct: 77  AIHPGYGFLSENAEFARKCEKNGIIFIGPSSRMIKGMGDKQRARALMKKYGVPVVPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGDQ 165
            +   +        +  P +IK   GG   G+        I         ++ +      
Sbjct: 137 VLEDWKEAARIAEKVGYPVLIKASAGGGGRGMRTAYDANEIQAAFENAQAEALAAFGDGS 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           + +E+ +     +   ++GD    +  +            K          PAK +    
Sbjct: 197 MYLEKLIQHPHHIEVQILGDRKGHIIHLGERDCSMQRRNQKLL-----EEAPAKILTSRQ 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + + + A  A +A+        +F+ D      +++E+N 
Sbjct: 252 REAIHKAAVRAAKAVHYVSAGTVEFVLDKEGN-FYFIEMNT 291


>gi|296113339|ref|YP_003627277.1| carbamoyl-phosphate synthase large chain [Moraxella catarrhalis
           RH4]
 gi|295921033|gb|ADG61384.1| carbamoyl-phosphate synthase large chain [Moraxella catarrhalis
           RH4]
          Length = 1078

 Score = 68.6 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 31/196 (15%), Positives = 73/196 (37%), Gaps = 8/196 (4%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYV 129
           LE   +P   +   A   + D+ R  Q+++   +    + +V            +  P V
Sbjct: 655 LEQAGVPIIGTSPDAIDRAEDRERFLQMINKLNLRQPNNSIVKSSEEGIREAAKVGYPLV 714

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  +  +   L  +   +H   +L++ ++ D IE+    + D    
Sbjct: 715 VRPSYVLGGRAMEIVYNEDELKRYLRDAVQASHEAPVLLDHFLDDAIEVDVDCVSDGKEV 774

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           V    +   +       +S  ++  + P  +  DI  +++R      + +G  G+    F
Sbjct: 775 VIGGIMQHIEQAGV---HSGDSACSIPPYSLSDDIQDDMRRQTVAMAKELGVVGLMNVQF 831

Query: 249 LFDPLSRKVFWLEINV 264
                   V+ LE+N 
Sbjct: 832 AI--KGETVYVLEVNP 845



 Score = 58.2 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 94/278 (33%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G++V  +         D              ++V  ++A  +PD    
Sbjct: 29  SGAQACKALKEEGYRVILVNSNPATIMTDPSMADATYIEPITWQTVEQIIAKERPDAILP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      +L         +   A   + D+    + +   G+    + +
Sbjct: 89  TMGGQTALNCALDLDKHGVLAKYGCELIGATKEAIEKAEDRELFDKAMKKIGLECPKAEI 148

Query: 113 VNRFTMDS--QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                     Q  +  P +I+P       G  +    +       +    +   QLLI++
Sbjct: 149 AQSMDDAFAIQAKVGFPCIIRPSFTMGGSGGGIAYNREEFIEICERGFDLSPTHQLLIDE 208

Query: 171 YVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D   + +   ++   D           +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKKDNCIIVCSIENFDPMGVHT----GDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RNASIAVLREIGVETGGSNVQFGINPKTGRMVVIEMNP 302


>gi|295107147|emb|CBL04690.1| biotin carboxylase /acetyl-CoA carboxylase carboxyltransferase
           subunit alpha [Gordonibacter pamelaeae 7-10-1-b]
          Length = 449

 Score = 68.6 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 33/220 (15%), Positives = 69/220 (31%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     +    +I +            +K ++++ +   GVPV P    
Sbjct: 77  AIHPGYGFLSENSTFAKLCRENDIVFIGPAPEVIDRMGNKSQARKTMMEAGVPVVPGTKE 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS-----SWNHGD 164
            +      +     +  P +IK   GG   G+ V   +         +      ++    
Sbjct: 137 PVHAPEEALAKARDVGWPIMIKASSGGGGKGMRVSLSEDDFCEQFSIAQRESVGAFGDNT 196

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             L    ++   +   V+ D    V  +            K             +  ++ 
Sbjct: 197 MYLERCVMNPRHVEVQVIADTYGTVVALGERDCSVQRNHQKMI----EESPSPALSEEVR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            E+   A  A QA+G       +FL D      +++E+N 
Sbjct: 253 AEMLDAAVRAAQAVGYTSAGTIEFLLDDQMN-YYFMEMNT 291


>gi|260584658|ref|ZP_05852404.1| pyruvate carboxylase [Granulicatella elegans ATCC 700633]
 gi|260157681|gb|EEW92751.1| pyruvate carboxylase [Granulicatella elegans ATCC 700633]
          Length = 1142

 Score = 68.6 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 41/265 (15%), Positives = 93/265 (35%), Gaps = 19/265 (7%)

Query: 11  EREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL-KPDLAFNVLHGNFGEDGLVQ 69
           E + SL   KA  + L   G K ++  +D    + +A     D      +G   E+    
Sbjct: 34  EDDHSLHRFKADEAYLVGEGKKPTEAYLDMDDIIRIAKRSGADAVHPG-YGFLSENIDFA 92

Query: 70  AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLIS 125
              +   + +    +    +  DK+++K      G+   P     +   +   D      
Sbjct: 93  RKCQDAGLTFVGPRLEHLDILGDKLKAKNAAHKAGLQSIPGTEGTVSSVQEIYDFGEQFG 152

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSWNHGDQLLIEQYVD-GIELTCG 180
            P +IK   GG   G+ V+ + + +       + ++       +  +E+Y++    +   
Sbjct: 153 YPIMIKAALGGGGRGMRVVYRKEDVQDSYDRAVGEAIKAFGAGECYVEKYIENPQHIEVQ 212

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIG 239
           ++GD   +V              ++        V P   +  ++  ++   A    + IG
Sbjct: 213 ILGDEHGNVV-----HLFERDCSVQRRHQKVIEVAPCVSLSEEMRSKICNAAASFMKEIG 267

Query: 240 CRGISRSDFLFDPLSRKVFWLEINV 264
                  +FL D    + +++E+N 
Sbjct: 268 YVNAGTVEFLLD--GNQFYFIEVNP 290


>gi|226361027|ref|YP_002778805.1| acyl-CoA carboxylase alpha chain [Rhodococcus opacus B4]
 gi|226239512|dbj|BAH49860.1| acyl-CoA carboxylase alpha chain [Rhodococcus opacus B4]
          Length = 659

 Score = 68.6 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 41/219 (18%), Positives = 80/219 (36%), Gaps = 22/219 (10%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      +    + +      A  +   K+ SK+++++ GVPV     +
Sbjct: 77  AVHPGYGFLSENAAFARAVHNAGLTWIGPPAPAIEMMGSKVESKKLMAAAGVPV-----L 131

Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQLLIE 169
                D+      P ++K   GG   G+ V++    +P  L  +            +  E
Sbjct: 132 AELDPDAVTEADLPVLVKASAGGGGRGMRVVRALADLPEQLEGARREAQSAFGDPTVFCE 191

Query: 170 QYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI---YK 225
           +Y++ G  +   VM D    V  +   +        K          P+ +   +    +
Sbjct: 192 RYLETGRHIEVQVMADRHGTVWAVGERECSIQRRHQK-----VVEEAPSPLVETVPGMRE 246

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +   A LA +AI   G    +FL D      ++LE+N 
Sbjct: 247 RLFEAARLAAKAIDYEGAGTVEFLADHA-GDFYFLEMNT 284


>gi|261365571|ref|ZP_05978454.1| carbamoyl-phosphate synthase, large subunit [Neisseria mucosa ATCC
           25996]
 gi|288565894|gb|EFC87454.1| carbamoyl-phosphate synthase, large subunit [Neisseria mucosa ATCC
           25996]
          Length = 1071

 Score = 68.6 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 29/192 (15%), Positives = 72/192 (37%), Gaps = 8/192 (4%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYVIKPL 133
            +    +   +   + D+ R ++V++  G+   P+ + +           I  P V++P 
Sbjct: 652 GVNIIGTSADSIDAAEDRERFQKVLNDLGLRQPPNRIAHNEEEALVKAEEIGYPLVVRPS 711

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEI 192
                  + V+   + +   + ++   +    +L++ ++ + IE+    + D    V   
Sbjct: 712 YVLGGRAMQVVHSAEELQKYMREAVQVSEDSPVLLDFFLNNAIEVDVDCVSDGKDVVIGG 771

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            +   +       +S  +   + P  +  +I  E++R       A+G  G+    F    
Sbjct: 772 IMQHVEQAGI---HSGDSGCSLPPYSLSEEIQDEIRRQTKAMAYALGVVGLMNVQFAV-- 826

Query: 253 LSRKVFWLEINV 264
               VF LE+N 
Sbjct: 827 QDGVVFVLEVNP 838



 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 50/278 (17%), Positives = 101/278 (36%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +              DV        ++V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYKVILVNSNPATIMTDPEMADVTYIEPIMWQTVEKIIAKERPDAILP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      +L    +    +   A   + D+ R K+ +   G+    S +
Sbjct: 89  TMGGQTALNCALDLARNGVLAKYNVELIGATEDAIDKAEDRGRFKEAMEKIGLSCPKSFV 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     + +Q  +  P +I+P       G  +            +    +   +LLIEQ
Sbjct: 149 CHTMNEALAAQEQVGFPTLIRPSFTMGGSGGGIAYNKDEFLAICERGFDASPTHELLIEQ 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            V G  E    V+ D + +   I   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SVLGWKEYEMEVVRDKADNCIIICSIEN----FDPMGVHTGDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RNASLAVLREIGVDTGGSNVQFAVNPENGEMIVIEMNP 302


>gi|158303308|ref|NP_062203.1| propionyl-CoA carboxylase alpha chain, mitochondrial [Rattus
           norvegicus]
          Length = 723

 Score = 68.6 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 74/221 (33%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      L   ++ +      A     DK+ SK +     V   P    
Sbjct: 133 AVHPGYGFLSENKEFAKCLAAEDVTFIGPDTHAIQAMGDKIESKLLAKRAKVNTIPGFDG 192

Query: 112 LVNRFTMDS--QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGD 164
           ++            I  P +IK   GG   G+ +   D+             +SS+   D
Sbjct: 193 VLKDADEAVRIAREIGYPVMIKASAGGGGKGMRIPWDDEETRDGFRFSSQEAASSFG-DD 251

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           +LLIE+++D    +   V+GD   +   +   +        K             +  + 
Sbjct: 252 RLLIEKFIDNPRHIEIQVLGDKHGNALWLNERECSIQRRNQK----VVEEAPSIFLDPET 307

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +   A    +A+        +FL D      ++LE+N 
Sbjct: 308 RRAMGEQAVAWPKAVKYSSAGTVEFLVDSQKN-FYFLEMNT 347


>gi|206050|gb|AAA88512.1| alpha-propionyl-CoA carboxylase (EC 6.4.1.3) [Rattus norvegicus]
          Length = 721

 Score = 68.6 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 74/221 (33%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      L   ++ +      A     DK+ SK +     V   P    
Sbjct: 131 AVHPGYGFLSENKEFAKCLAAEDVTFIGPDTHAIQAMGDKIESKLLAKRAKVNTIPGFDG 190

Query: 112 LVNRFTMDS--QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGD 164
           ++            I  P +IK   GG   G+ +   D+             +SS+   D
Sbjct: 191 VLKDADEAVRIAREIGYPVMIKASAGGGGKGMRIPWDDEETRDGFRFSSQEAASSFG-DD 249

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           +LLIE+++D    +   V+GD   +   +   +        K             +  + 
Sbjct: 250 RLLIEKFIDNPRHIEIQVLGDKHGNALWLNERECSIQRRNQK----VVEEAPSIFLDPET 305

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +   A    +A+        +FL D      ++LE+N 
Sbjct: 306 RRAMGEQAVAWPKAVKYSSAGTVEFLVDSQKN-FYFLEMNT 345


>gi|317494234|ref|ZP_07952650.1| acetyl-CoA carboxylase [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316918007|gb|EFV39350.1| acetyl-CoA carboxylase [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 449

 Score = 68.6 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 41/225 (18%), Positives = 82/225 (36%), Gaps = 27/225 (12%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+      +E     +         L  DK+ +   +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAEQIERSGFIFIGPRAETIRLMGDKVSAISAMKKAGVPCVPGSDG 136

Query: 111 -----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWN 161
                ++ N+        I  P +IK   GG   G+ V++ D+ +   +     ++ +  
Sbjct: 137 PLGDDMVKNKA---IAKRIGYPVIIKASGGGGGRGMRVVRGDKDLEQSIIMTKAEAKAAF 193

Query: 162 HGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-I 219
             D + +E+Y++    +   V+ D   +   +A           K          PA  I
Sbjct: 194 SNDMVYMEKYLENPRHIEIQVLADGQGNAIYLAERDCSMQRRHQK-----VVEEAPAPGI 248

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             ++ + +      A   IG RG    +FLF   + + +++E+N 
Sbjct: 249 TPELRRYIGERCSKACVDIGYRGAGTFEFLF--ENGEFYFIEMNT 291


>gi|307293396|ref|ZP_07573242.1| phosphoribosylglycinamide formyltransferase 2 [Sphingobium
           chlorophenolicum L-1]
 gi|306881462|gb|EFN12678.1| phosphoribosylglycinamide formyltransferase 2 [Sphingobium
           chlorophenolicum L-1]
          Length = 415

 Score = 68.6 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 37/252 (14%), Positives = 83/252 (32%), Gaps = 26/252 (10%)

Query: 28  DAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87
             G +V  +     +   +   KPD     +     E   V A  E   +        A+
Sbjct: 45  ADGHEVFSMLDADLLAKAIEKHKPDFVVPEIEAIRTE---VLADFEARGVTVV-PSARAT 100

Query: 88  ALSMDKMRSKQVVS-SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
            ++M++ R ++V +   G+              +        P VIKP+   S  G   +
Sbjct: 101 IMTMNRDRIREVAAVELGLRTSRYRYAETLEEVLAGAAHTGLPCVIKPVMSSSGKGQSTV 160

Query: 145 KKDQSIPLDLLQSSSWNHGD--QLLIEQYVDGIELTCGVM---GDASLDVTEIAVPKSDF 199
           +  + +      + +   GD  ++++E+++   +    ++       +        + + 
Sbjct: 161 RTARELEAAWTYAVANMRGDRSRVIVEEFI-AFDYEITLLTVRSREGVSFCPPIGHRQER 219

Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
             Y+  +         P  +        Q +A      +G  GI   +F        V +
Sbjct: 220 GDYQESW--------QPTPMSSAALSAAQDMARKVVDNLGGYGIFGVEFFV--KGEDVIF 269

Query: 260 LEINVQP---GM 268
            E++ +P   GM
Sbjct: 270 SELSPRPHDTGM 281


>gi|296184871|ref|ZP_06853282.1| carbamoyl-phosphate synthase, large subunit [Clostridium
           carboxidivorans P7]
 gi|296050653|gb|EFG90076.1| carbamoyl-phosphate synthase, large subunit [Clostridium
           carboxidivorans P7]
          Length = 1062

 Score = 68.6 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 41/267 (15%), Positives = 92/267 (34%), Gaps = 38/267 (14%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLV------- 68
           A+++ G K   I         D D +  L    L  D   N+++    E G++       
Sbjct: 580 AIKETGHKAIIINNNPETVSTDFDTADKLYFEPLHIDDVMNIVNREKVE-GVIVQLGGQT 638

Query: 69  -----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ-- 121
                Q + E   +    S   A  L+ D+ + ++ +    +P      V          
Sbjct: 639 SINLAQKLYEK-GVKILGSSFEAIDLAEDRDKFRKFLQKLNIPSPTGTAVISIEEAYMAV 697

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
             +  P V++P        + V+   + +   + ++   +    +LI++Y+ G E+    
Sbjct: 698 EELQYPVVVRPSYVIGGRAMEVVYDKKGLTKYMNEAVQVSTDHTILIDRYIKGTEIEVDA 757

Query: 182 MGDAS---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQA 237
           + D     +      V ++  +S        +S  V P   +  +    +        + 
Sbjct: 758 ICDGEDILMPGIMEHVERTGVHS-------GDSITVYPYMTLKEETINTLIEYTKKITKN 810

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINV 264
           +   G+    ++FD     V+ +E+N 
Sbjct: 811 MNIIGLVNIQYVFD--GNNVYVIEVNP 835



 Score = 52.0 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 45/288 (15%), Positives = 99/288 (34%), Gaps = 37/288 (12%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFN---------- 56
           G ++E + S   G     A+++ G +   I+ + +  +  +++  D  +           
Sbjct: 21  GQAAEFDYS---GTQACKAIKEEGIETILINSNPATIMTDSNM-ADKVYIEPLTLECVKE 76

Query: 57  ---------VLHGNFGEDG-------LVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
                    +L G  G+             +L+  ++        A   + D+   K+++
Sbjct: 77  IIEKERPDGILAGFGGQTALNLAMELKKHGVLDEFKVKLLGINSEAIKKAEDREEFKKLM 136

Query: 101 SSCGVPVCPSILVNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS 158
                P+  SI+        D       P +I+P       G  + +    +        
Sbjct: 137 IENNQPIPMSIIATNVDECVDFVDKYGFPVIIRPAYTLGGTGGGIAENMDQLLEICDLGI 196

Query: 159 SWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
             +   Q+L+EQ V G  EL   V+ D   +   I   ++      +   + +S  V P+
Sbjct: 197 KMSPIGQILLEQSVAGWKELEYEVIRDGKDNCIIICNMEN---IDPVGIHTGDSIVVAPS 253

Query: 218 K-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +    Y  +++ A    +++   G     F  D  S     +E+N 
Sbjct: 254 QTLRDKEYHMLRKAAIDIIRSLKIEGGCNIQFALDTESSNYVVIEVNP 301


>gi|227549960|ref|ZP_03980009.1| acyl coenzyme A carboxylase [Corynebacterium lipophiloflavum DSM
           44291]
 gi|227077976|gb|EEI15939.1| acyl coenzyme A carboxylase [Corynebacterium lipophiloflavum DSM
           44291]
          Length = 588

 Score = 68.6 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 32/200 (16%), Positives = 65/200 (32%), Gaps = 16/200 (8%)

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVI 130
             + +      A A   DK+ ++ +  +   P+ P         D           P  I
Sbjct: 100 AGLTWIGPSPEAIAALGDKVTARHIAQAADAPMAPGTKDPVADADEVLAFADEHGLPVAI 159

Query: 131 KPLKGGSSLGIIVIKKDQSIPL----DLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDA 185
           K   GG   G+ V    + IP        ++ +     +  +E+Y+D    +   V+ D 
Sbjct: 160 KAAFGGGGRGMKVAYTREEIPELFASATREAVAAFGRGECFVERYLDKARHVEAQVLADQ 219

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGIS 244
             +V  +           L+          PA  +  +  + +   A    + +G  G  
Sbjct: 220 HGNVVVVGT-----RDCSLQRRFQKLVEEAPAPFLTDEQRERIHSSAKAICREVGYYGAG 274

Query: 245 RSDFLFDPLSRKVFWLEINV 264
             ++L       + +LE+N 
Sbjct: 275 TVEYLV-GADGLISFLEVNT 293


>gi|207727703|ref|YP_002256097.1| acetyl/propionyl-coa carboxylase, alpha subunit protein [Ralstonia
           solanacearum MolK2]
 gi|206590944|emb|CAQ56556.1| acetyl/propionyl-coa carboxylase, alpha subunit protein [Ralstonia
           solanacearum MolK2]
          Length = 674

 Score = 68.6 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 41/221 (18%), Positives = 78/221 (35%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+           + +      A      K  +K ++   GVP+ P    
Sbjct: 77  AIHPGYGFLSENETFARACAEAGLVFVGPPASAIEAMGSKSAAKALMERAGVPLVPGYHG 136

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
           +             I  P +IK   GG   G+ V++  ++    L     ++SS    D+
Sbjct: 137 DNQDAAFLRAQADRIGYPVLIKASAGGGGKGMRVVEAGEAFEAALASVKREASSSFGDDR 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           +LIE+Y+     +   V  D   +   +           ++          PA  + LD 
Sbjct: 197 VLIEKYLTRPRHIEIQVFADGFGNAVYL-----FERDCSVQRRHQKVLEEAPAPGMTLDR 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              +   A  A +A+G  G    +F+ D      +++E+N 
Sbjct: 252 RHAMGEAAVAAARAVGYVGAGTVEFIVDE-DGTFYFMEMNT 291


>gi|121999113|ref|YP_001003900.1| acetyl-CoA carboxylase, biotin carboxylase [Halorhodospira
           halophila SL1]
 gi|121590518|gb|ABM63098.1| acetyl-CoA carboxylase, biotin carboxylase [Halorhodospira
           halophila SL1]
          Length = 447

 Score = 68.6 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 36/224 (16%), Positives = 79/224 (35%), Gaps = 24/224 (10%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +      +     DK+ + + +   GVP  P    
Sbjct: 76  AIHPGYGFLSENADFAERVEQSGFVFIGPRAESIRTMGDKVSAIRAMKEAGVPCVPGSNG 135

Query: 112 LVNRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNH 162
            V     D        I  P +IK   GG   G+ V++ + ++   +        +++  
Sbjct: 136 PVPDDDPDETLRIASEIGYPIMIKAASGGGGRGMRVVRSEAALLNAVSLTRGEAENAFG- 194

Query: 163 GDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IP 220
              + +E+Y++    +   V+ D   +   +            K          PA  I 
Sbjct: 195 DGTVYMEKYLEKPRHIEVQVLADHHGNAIHLGERDCSMQRRHQK-----VVEEAPAPGIT 249

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
               +++      A + +G RG    +FL+   + + +++E+N 
Sbjct: 250 EAQRRDIGERCAEACRQMGYRGAGTFEFLY--ENGEFYFIEMNT 291


>gi|326576363|gb|EGE26272.1| carbamoyl-phosphate synthase, large subunit [Moraxella catarrhalis
           O35E]
          Length = 1078

 Score = 68.6 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 31/196 (15%), Positives = 73/196 (37%), Gaps = 8/196 (4%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYV 129
           LE   +P   +   A   + D+ R  Q+++   +    + +V            +  P V
Sbjct: 655 LEQAGVPIIGTSPDAIDRAEDRERFLQMINKLNLRQPNNSIVKSSEEGIREAAKVGYPLV 714

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  +  +   L  +   +H   +L++ ++ D IE+    + D    
Sbjct: 715 VRPSYVLGGRAMEIVYNEDELKRYLRDAVQASHEAPVLLDHFLDDAIEVDVDCVSDGKEV 774

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           V    +   +       +S  ++  + P  +  DI  +++R      + +G  G+    F
Sbjct: 775 VIGGIMQHIEQAGV---HSGDSACSIPPYSLSDDIQDDMRRQTVAMAKELGVVGLMNVQF 831

Query: 249 LFDPLSRKVFWLEINV 264
                   V+ LE+N 
Sbjct: 832 AI--KGETVYVLEVNP 845



 Score = 57.8 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 94/278 (33%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G++V  +         D              ++V  ++A  +PD    
Sbjct: 29  SGAQACKALKEEGYRVILVNSNPATIMTDPSMADATYIEPITWQTVEQIIAKERPDAILP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      +L         +   A   + D+    + +   G+    + +
Sbjct: 89  TMGGQTALNCALDLDKHGVLAKYGCELIGATKEAIEKAEDRELFDKAMKKIGLECPKAEI 148

Query: 113 VNRFTMDS--QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                     Q  +  P +I+P       G  +    +       +    +   QLLI++
Sbjct: 149 AQSMDDAFAIQAKVGFPCIIRPSFTMGGSGGGIAYNREEFIEICERGFDLSPTHQLLIDE 208

Query: 171 YVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D   + +   ++   D           +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKKDNCIIVCSIENFDPMGVHT----GDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RNASIAVLREIGVETGGSNVQFGINPKTGRMVVIEMNP 302


>gi|269960252|ref|ZP_06174627.1| carbamoyl-phosphate synthase large subunit [Vibrio harveyi 1DA3]
 gi|269835059|gb|EEZ89143.1| carbamoyl-phosphate synthase large subunit [Vibrio harveyi 1DA3]
          Length = 1077

 Score = 68.6 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 48/278 (17%), Positives = 97/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D D              V  ++A  KPD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPDMADATYIEPIQWEVVRNIIAKEKPDAVLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV--PVCPS 110
            + G    +  +      +LE   +    +   A   + D+ R  + + S G+  P   +
Sbjct: 89  TMGGQTALNCALDLEKHGVLEEFGVEMIGATADAIDKAEDRSRFDKAMKSIGLECPRADT 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                       ++  P +I+P       G  +    +       +    +  ++LLI++
Sbjct: 149 AKTMEEAYAVLDMVGFPCIIRPSFTMGGTGGGIAYNKEEFEEICRRGLDLSPTNELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + + +   A+   D           +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKADNCIIVCAIENFDPMGIHT----GDSITVAPAQTLTDKEYQLM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P   ++  +E+N 
Sbjct: 265 RNASLAVLREIGVETGGSNVQFGINPKDGRMVIIEMNP 302



 Score = 62.1 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 34/196 (17%), Positives = 75/196 (38%), Gaps = 8/196 (4%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH--LISPPYV 129
           LE   +P   +   A   + D+ R +  V   G+    +  V       +    I  P V
Sbjct: 653 LEAAGVPIIGTSPDAIDRAEDRERFQVAVDRLGLLQPENATVTTMEQAVEKSREIGYPLV 712

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           ++P        + ++  +Q +     ++ S ++   +L++ ++D       V  DA  D 
Sbjct: 713 VRPSYVLGGRAMEIVYDEQDLRRYFNEAVSVSNESPVLLDSFLD---DAVEVDIDAICDG 769

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
             + +     +  +    S +S   LPA  +  +I   ++         +G RG+  + F
Sbjct: 770 ERVVIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMREQVEKLAFELGVRGLMNTQF 829

Query: 249 LFDPLSRKVFWLEINV 264
                + +V+ +E+N 
Sbjct: 830 AV--KNNQVYLIEVNP 843


>gi|225350763|ref|ZP_03741786.1| hypothetical protein BIFPSEUDO_02332 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225158219|gb|EEG71461.1| hypothetical protein BIFPSEUDO_02332 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 1126

 Score = 68.6 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 44/288 (15%), Positives = 103/288 (35%), Gaps = 36/288 (12%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQIDVDRS---------------------VGLV 45
           G ++E + S   G      L + G +V  ++ + +                     +  +
Sbjct: 21  GQAAEFDYS---GTQACRVLREEGIRVILVNSNPATIMTDPEMADATYIEPISTPILEQI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +A  +PD     L G    +  +      +L+   +    + + A     D+   K+VV 
Sbjct: 78  IAKERPDALLPTLGGQTALNAAMALGEAGVLKKYNVELIGASLEAIDRGEDRELFKKVVE 137

Query: 102 SCGVPVCPSILVNRFTMDS--QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G     S + +              P V++P      LG  +   ++ +         
Sbjct: 138 EAGAESARSDIAHSIEEVDKIAEKFGYPLVVRPSFTMGGLGSGIAHDEEELHRIAGAGIH 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
           ++  D++LIE+ ++G  E    +M D   +V  +   ++      +   + +S  V P  
Sbjct: 198 YSPTDEVLIEEGIEGWKEYELELMRDKKDNVVVVCPIENVD---PVGVHTGDSITVAPVF 254

Query: 219 -IPLDIYKEVQRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
            +    Y++++ +     + +G   G     F  +P + ++  +E+N 
Sbjct: 255 TLTDREYQKLRDIGIAIIRGVGVDTGGCNIQFAINPNTGRIIVIEMNP 302



 Score = 50.5 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 33/233 (14%), Positives = 75/233 (32%), Gaps = 29/233 (12%)

Query: 67  LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTMDSQHLI 124
            + A L+   +P   +   +  L+ ++    +V+    +        L      ++ H I
Sbjct: 651 SLAARLKAAGVPILGTTPESIDLAENRELFGEVLKKAEMNAPRYGTALSLDEAREAAHNI 710

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
             P +++P       G+ ++  D  +   + ++      D +     V G   +  ++  
Sbjct: 711 GYPVLVRPSYVLGGRGMEIVYDDAQLCKYVDRALKEAQADTV-----VSGRLPSPLLIDK 765

Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK--------------IPLDIYKEVQRL 230
              D  EI V     +  E  Y      HV  A               +  D  + ++  
Sbjct: 766 FLQDAVEIDV--DALFDGEELYIGGIMEHVEEAGVHSGDAACTLPPSTLSDDQIRRLREG 823

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283
            +   +  G +G+    + F      ++ +E N +   T     P  +   G 
Sbjct: 824 TYAIAKGCGVQGLINVQYAFMA--NTLYVIEANPRASRT----VPFASKATGV 870


>gi|212636206|ref|YP_002312731.1| biotin/lipoyl attachment:Carbamoyl-phosphate synthase L chain,
           ATP-binding:Carbamoyl-phosphate synthetase large chain
           [Shewanella piezotolerans WP3]
 gi|212557690|gb|ACJ30144.1| Biotin/lipoyl attachment:Carbamoyl-phosphate synthase L chain,
           ATP-binding:Carbamoyl-phosphate synthetase large chain
           [Shewanella piezotolerans WP3]
          Length = 685

 Score = 68.6 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 77/221 (34%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       E   I +      A      K  +K+++ +  VP+ P    
Sbjct: 77  AIHPGYGFLSENAEFALKCEQSGIAFVGPSAAAIDSMGSKSAAKEIMGAANVPLVPGYHG 136

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
           +    D      + +  P +IK   GG   G+ +++    +   +  +          D+
Sbjct: 137 DAQDDDVLVSEANEMGFPLLIKAAYGGGGKGMRIVESKDEVLEAIQSARREAISSFGNDK 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           LL+E+Y+     +   V  D+  +   ++           K          PA  +   +
Sbjct: 197 LLMERYLRQPRHVEVQVFADSFGNCIYLSDRDCSIQRRHQK-----VVEEAPAPGLSDAL 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              +   A  A +AI   G    +FL D      +++E+N 
Sbjct: 252 RVNMGEAAVAAAKAINYEGAGTVEFLLDT-DGSFYFMEMNT 291


>gi|197116560|ref|YP_002136987.1| phosphoribosylglycinamide formyltransferase 2 [Geobacter
           bemidjiensis Bem]
 gi|197085920|gb|ACH37191.1| phosphoribosylglycinamide formyltransferase, formate-dependent
           [Geobacter bemidjiensis Bem]
          Length = 392

 Score = 68.6 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 34/185 (18%), Positives = 65/185 (35%), Gaps = 18/185 (9%)

Query: 97  KQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL-- 152
           +      G+P              ++   I  P V+KP+   S  G  V++    +    
Sbjct: 117 RLAAEELGLPTAAYRFATSMDEFREAVAAIGLPCVVKPIMSSSGKGQSVLRDAADLERCF 176

Query: 153 DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212
                 +    D++++EQ++   +    ++       T    P         +    +  
Sbjct: 177 KYAMEGARGASDKVIVEQFIP-FDYEITLLTVRHAGGTSFCPPIG------HRQIDGDYH 229

Query: 213 HVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP---GM 268
               P  +   +  E QR A     A+G RGI   +F       KV++ E++ +P   GM
Sbjct: 230 ESWQPTPMVPAVLAEAQRQAEAVTGALGGRGIFGVEFFVT--GDKVWFSEVSPRPHDTGM 287

Query: 269 -TPVS 272
            T +S
Sbjct: 288 VTMIS 292


>gi|307329280|ref|ZP_07608444.1| ATP-dependent carboxylate-amine ligase domain protein ATP-grasp
           [Streptomyces violaceusniger Tu 4113]
 gi|306885069|gb|EFN16091.1| ATP-dependent carboxylate-amine ligase domain protein ATP-grasp
           [Streptomyces violaceusniger Tu 4113]
          Length = 430

 Score = 68.6 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 41/206 (19%), Positives = 77/206 (37%), Gaps = 19/206 (9%)

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYVI 130
             L +P       A+    +K+++++   + GV V     V        +   I  P V+
Sbjct: 115 RTLGLP--GLNPTAAYACRNKLQTRRAAEADGVGVPAWAWVRSEEEAVTTAERIGLPCVV 172

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG-------DQLLIEQYVDGIELTCGVMG 183
           KP+  G SL + + +  + +       +S              L+E+Y+ G E++     
Sbjct: 173 KPMTDGGSLDVKLCRTAEEVAAQYHSIASVPTDYFGGQRIPGALVEEYLVGFEVSVECF- 231

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG-CRG 242
               + T I V      ++      + +  V P+ +P  + KE+   AF A  A+G   G
Sbjct: 232 TFRGERTLIGVTDKGLGAHPY---FVEAGEVFPSLLPQSVQKELVSTAFAALDAVGHDFG 288

Query: 243 ISRSDFLFDPLSRKVFWLEINV-QPG 267
            +  +            +EIN   PG
Sbjct: 289 CAHVEVRMTASG--PKLIEINARMPG 312


>gi|90022557|ref|YP_528384.1| glutathione synthase [Saccharophagus degradans 2-40]
 gi|89952157|gb|ABD82172.1| ATP-grasp fold [Saccharophagus degradans 2-40]
          Length = 486

 Score = 68.6 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 34/191 (17%), Positives = 72/191 (37%), Gaps = 15/191 (7%)

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSS 138
             ++     +K+      S   VP   + +V     +     +   + P V+K  +G  S
Sbjct: 272 DPISILRCCNKVFLHDAFSYQKVPSPKTHIVISCDDEQLDKLEQEFAYPMVLKMPEGAFS 331

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKS 197
            G+  ++    +  +L   S +     +L+++Y+    +   GV+   ++      + ++
Sbjct: 332 KGVYKVENRAELKTNL--ESIFAESALVLVQEYLYTDFDWRIGVLNGRAIYACRYHMARN 389

Query: 198 --DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255
               Y++  K         LP     ++ K V   A  A   IG +G+   D        
Sbjct: 390 HWQIYNHGAKRFVSGGFETLP---TFEVPKAVLDAAIKASNIIG-KGLYGVD--IKQKDN 443

Query: 256 KVFWLEINVQP 266
           KV+ +E+N  P
Sbjct: 444 KVYVIEVNDNP 454


>gi|315635550|ref|ZP_07890816.1| phosphoribosylglycinamide formyltransferase 2 [Arcobacter butzleri
           JV22]
 gi|315480308|gb|EFU70975.1| phosphoribosylglycinamide formyltransferase 2 [Arcobacter butzleri
           JV22]
          Length = 389

 Score = 68.6 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 36/243 (14%), Positives = 84/243 (34%), Gaps = 37/243 (15%)

Query: 42  VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQ--- 98
           +  ++   KP      +         +QA+ +  +       ++ +A +++K  +++   
Sbjct: 66  LLDIIRREKPTYILPEVEAIN-----IQALFDAEK---EGFHVIPNADAVNKTMNRKNIR 117

Query: 99  --VVSSCGVPVCPSILVNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154
                   +P      V  F    ++  +I  P VIKP+   S  G  V + +  +    
Sbjct: 118 EFAAEQLKLPTSKYKFVTTFEALKEAASVIGFPCVIKPVMSSSGHGQSVARSEADLEKSW 177

Query: 155 LQS-SSWNHGDQLLIEQYVDGIELTCGVM-----GDASLDVTEIAVPKSDFYSYELKYSS 208
             +  +     +L++E+++   +    ++      D         + K   Y +      
Sbjct: 178 EMAKEARGDASELIVEEFIT-FDYEITMLTVRNGKDTVFCEPIGHIQKDGDYIFSW---- 232

Query: 209 LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP-- 266
                  P  +     K+ Q +A      +G RGI   +         V++ E++ +P  
Sbjct: 233 ------QPMNMSEVAVKKSQEIAKTITDGLGGRGIFGVELFV--KGDDVYFSEVSPRPHD 284

Query: 267 -GM 268
            GM
Sbjct: 285 TGM 287


>gi|294790485|ref|ZP_06755643.1| acetyl-CoA carboxylase alpha chain [Scardovia inopinata F0304]
 gi|294458382|gb|EFG26735.1| acetyl-CoA carboxylase alpha chain [Scardovia inopinata F0304]
          Length = 639

 Score = 68.6 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 37/219 (16%), Positives = 77/219 (35%), Gaps = 17/219 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E     + ++   + +            DK+ +++V     VP  P I  
Sbjct: 76  AIHPGYGFLSESDSFASAVQDAGLIWVGPNPQVLEDLGDKISARRVARVAQVPPVPGISE 135

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD--QLL 167
               +            P ++K   GG   GI VI+ +  +        S    D  +  
Sbjct: 136 PVDNVHTLVTFATDYGYPVMMKRTDGGGGRGITVIRDEDELRAFYSAHDSLQGSDLSKYF 195

Query: 168 IEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYK 225
           IE++V     +      D+  + T  +          ++  +       PA  I   +  
Sbjct: 196 IEKFVPRARHVETQCGRDSQGNFTVYST-----RDCSVQRRNQKLIEEAPAPFINEKVEA 250

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +++  +     ++G  G+   +F+  P S  V++LE+N 
Sbjct: 251 KLKTYSRRLFDSVGYVGLGTCEFMVTPTSD-VYFLEVNP 288


>gi|312197096|ref|YP_004017157.1| carbamoyl-phosphate synthase L chain ATP-binding protein [Frankia
           sp. EuI1c]
 gi|311228432|gb|ADP81287.1| Carbamoyl-phosphate synthase L chain ATP-binding protein [Frankia
           sp. EuI1c]
          Length = 682

 Score = 68.6 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 39/224 (17%), Positives = 81/224 (36%), Gaps = 22/224 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+           + +      A      K R+K ++++ GVPV P ++V
Sbjct: 79  AIHPGYGFLSENAGFARACAQAGVTFVGPSPSAIESMGSKTRAKDLMAAAGVPVLPGLVV 138

Query: 114 NRFTMD-------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWN 161
           +            +   +  P ++K + GG   G+ +++    +   +       +S++ 
Sbjct: 139 DEALAADADALVRAAADLEFPLLVKAVYGGGGRGMRIVRTGPELAEAVTGARREAASAFG 198

Query: 162 HGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
               + +E YV+    +   V+ D    V  +   +        K             + 
Sbjct: 199 -DGAVFLEHYVERPRHIEVQVLADTHGSVVHLFERECSIQRRFQKII----EEAPSVAVD 253

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +   +   A  A  AIG  G    +F+ D  S + F+LE+N 
Sbjct: 254 AQLRGRLGAAAVAAAAAIGYVGAGTVEFVLD-QSGRFFFLEVNT 296


>gi|255292095|dbj|BAH90574.1| acetyl-CoA carboxylase [uncultured bacterium]
 gi|255292180|dbj|BAH89305.1| acetyl-CoA carboxylase [uncultured bacterium]
          Length = 455

 Score = 68.6 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 32/219 (14%), Positives = 79/219 (36%), Gaps = 15/219 (6%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+       +   + +            +K+ ++ +    GVP+ P    
Sbjct: 78  AIHPGYGFLSENEAFAKACDENGLIFVGPSAENIRQMGNKLIARDIAQEVGVPLAPGSPR 137

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGDQL 166
           I       +    +  P + K   GG   GI ++++ + +         ++ +    + L
Sbjct: 138 ISDFSVAREIAEGLGMPVLFKAAAGGGGRGIRIVRRSEDLRDAFDTASAEALAAFGDNAL 197

Query: 167 LIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
            +E+Y+ +   +   ++ D    V  +        S + +Y  +         +   + +
Sbjct: 198 FLERYIGNARHVEVQILADQHGKVLHLGERD---CSLQRRYQKM-VEEAPAFGLAESLRQ 253

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            ++  A    + IG R     +F+ D    + F+LE+N 
Sbjct: 254 GMRDAAVALARHIGYRSAGTVEFIVDVERNEFFFLEMNT 292


>gi|225568839|ref|ZP_03777864.1| hypothetical protein CLOHYLEM_04918 [Clostridium hylemonae DSM
           15053]
 gi|225162338|gb|EEG74957.1| hypothetical protein CLOHYLEM_04918 [Clostridium hylemonae DSM
           15053]
          Length = 1074

 Score = 68.6 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 47/276 (17%), Positives = 101/276 (36%), Gaps = 32/276 (11%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL   G+++  +              DV          +  ++A  +PD    
Sbjct: 29  SGTQACKALRGLGYEIVLVNSNPATIMTDPETADVTYIEPLNVERLEQIIAKERPDALLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G  G +   +     +LE   +      + A     D++  K+ + S G+ +  S +
Sbjct: 89  NLGGQSGLNLCSELAKAGVLEKYNVQVIGVQVDAIERGEDRIEFKKAMDSLGIEMAKSEV 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     +  P V++P       G  ++     +     +    +   Q+L+E+
Sbjct: 149 AYSVEEALAIADELGYPVVLRPAYTMGGAGGGLVYNKDELKTVCARGLQASLVGQVLVEE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQ 228
            + G  EL   ++ D+  ++  +   ++      L   + +S    P   I  +  K +Q
Sbjct: 209 SILGWEELELEIVRDSENNMITVCFIEN---IDPLGVHTGDSFCSAPMLTISEECQKRLQ 265

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             A+   +++   G +   F  DP+S ++  +EIN 
Sbjct: 266 EQAYKIVESVQVIGGTNVQFAHDPVSDRIIVIEINP 301



 Score = 60.1 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 26/196 (13%), Positives = 72/196 (36%), Gaps = 8/196 (4%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           LE   +    +      L+ D+   ++++    +P+  S +       +     I  P +
Sbjct: 647 LEKNGVRILGTSPSVIDLAEDRDLFREMMEKLDIPMPESGMATTVDEALAIAERIGYPVM 706

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLD 188
           ++P       G+ V+  D+S+   +  +        +LI+++++   E     + D +  
Sbjct: 707 VRPSYVLGGRGMEVVYDDESMVSYMNAAVGVTPDRPILIDRFLNHATECEADAISDGTHA 766

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                +   +       +S  ++  +    I  D  + ++       + +  +G+   + 
Sbjct: 767 FVPAVMEHIELAGV---HSGDSACIIPSVHISDDNVQTIKEYTRKIAEEMHVKGL--MNM 821

Query: 249 LFDPLSRKVFWLEINV 264
            +   + KV+ LE N 
Sbjct: 822 QYAIENGKVYVLEANP 837


>gi|90417344|ref|ZP_01225270.1| acetyl-CoA carboxylase, biotin carboxylase, putative [marine gamma
           proteobacterium HTCC2207]
 gi|90330929|gb|EAS46192.1| acetyl-CoA carboxylase, biotin carboxylase, putative [marine gamma
           proteobacterium HTCC2207]
          Length = 671

 Score = 68.6 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 32/199 (16%), Positives = 72/199 (36%), Gaps = 16/199 (8%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD----SQHLISPPYVIK 131
            + +      A  +  +K  SK+ + + GVP  P    +  + +        I  P ++K
Sbjct: 101 GLVFIGPSAEAIEVMGNKAESKRRMIAAGVPCVPGYEGHDQSDETLLAEGAKIPLPLMVK 160

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQS-----SSWNHGDQLLIEQYVDGIELTCGVMGDAS 186
              GG   G+ ++     +   +  +     S++  G+ +L +  +    +   V  D  
Sbjct: 161 AAAGGGGRGMRLVYDQADLANAIKLARAEAESAFGSGELILEQAIIQPRHVEIQVFAD-- 218

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRGISR 245
              +             ++          P  I   ++ +++ R A  A +++  RG   
Sbjct: 219 ---SFGNTVHLGERDCSVQRRHQKVIEEAPCPIMTSELREQMGRSAIDAAKSVHYRGAGT 275

Query: 246 SDFLFDPLSRKVFWLEINV 264
            +FL    S   ++LE+N 
Sbjct: 276 VEFLL-ESSGAFYFLEMNT 293


>gi|85374807|ref|YP_458869.1| acetyl/propionyl-CoA carboxylase, alpha subunit [Erythrobacter
           litoralis HTCC2594]
 gi|84787890|gb|ABC64072.1| acetyl/propionyl-CoA carboxylase, alpha subunit [Erythrobacter
           litoralis HTCC2594]
          Length = 622

 Score = 68.6 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 44/227 (19%), Positives = 87/227 (38%), Gaps = 26/227 (11%)

Query: 57  VLHGNFG---ED-GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111
            +H  +G   E+ G  QA+++   + +      A      K  +K+++   GVPV P   
Sbjct: 77  AIHPGYGFLSENAGFAQAVID-AGLIWVGPPPAAIDAMGLKDAAKKLMREAGVPVTPGYE 135

Query: 112 ----LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHG 163
                V R   ++   I  P +IK + GG   G+  +         L     ++ +    
Sbjct: 136 GEDQSVERLKKEADA-IGYPVLIKAVAGGGGKGMRKVDAAADFVASLESCRREAKASFSN 194

Query: 164 DQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPL 221
           D++L+E+++     +   V GD+  +V              L+          PA  +  
Sbjct: 195 DEVLLEKWITSPRHIEVQVFGDSHGNVV-----HLFERDCSLQRRHQKVIEEAPAPGMDE 249

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR----KVFWLEINV 264
              +E+   A  A +A+   G    +F+ D        ++F++E+N 
Sbjct: 250 ATREEICAAAVRAAKAVDYEGAGTIEFIADASEGLRADRIFFMEMNT 296


>gi|298674876|ref|YP_003726626.1| hypothetical protein Metev_0936 [Methanohalobium evestigatum
           Z-7303]
 gi|298287864|gb|ADI73830.1| protein of unknown function DUF201 [Methanohalobium evestigatum
           Z-7303]
          Length = 370

 Score = 68.6 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 44/190 (23%), Positives = 78/190 (41%), Gaps = 33/190 (17%)

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGII 142
              A  +S DK +SKQ   S  +P                    P +IKPL   SS+G+ 
Sbjct: 94  DFNAYRISSDKQKSKQYFKSINIPTPKDY-----------PCKLPCIIKPLSESSSIGVS 142

Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSY 202
           +I  ++ +             +  +IE++++G  ++  V+GD     T  AV K      
Sbjct: 143 IIHDNKYLDS--------KTDELKIIEEFIEGDVVSLEVVGDG----TNFAVVKETIVHI 190

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
           + KY     T       PL+   E +++A+     +G +GI   + + +P    +  +EI
Sbjct: 191 DEKYDCHMVT-------PLEHDIEFRKIAYKLASNLGLKGIMDVEAIKNPDD--LRVIEI 241

Query: 263 NV-QPGMTPV 271
           +   P  TP+
Sbjct: 242 DARFPSQTPI 251


>gi|312196711|ref|YP_004016772.1| carbamoyl-phosphate synthase L chain ATP-binding protein [Frankia
           sp. EuI1c]
 gi|311228047|gb|ADP80902.1| Carbamoyl-phosphate synthase L chain ATP-binding protein [Frankia
           sp. EuI1c]
          Length = 645

 Score = 68.6 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 33/195 (16%), Positives = 75/195 (38%), Gaps = 13/195 (6%)

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLK 134
             + +        +   DK+ +K+   + GVP  PS             +  P ++K   
Sbjct: 93  AGLTWVGPTPEVISAMGDKLAAKRAAIAAGVPTLPS----SDDPADAAGVGYPLLVKAAA 148

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQLLIEQYV-DGIELTCGVMGDASLDV 189
           GG   G+ ++++ Q +P  +  +           ++ +E+YV     +   ++GDA  ++
Sbjct: 149 GGGGKGMRIVERAQDLPEAVAAAQREALGAFGDGRVFLERYVARSRHVEIQIVGDAHGNL 208

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
             +   +        K    + + V+  ++       +   A    + +G R     +FL
Sbjct: 209 FHLGERECSIQRRHQKIVEESPSPVVTPRL----RARMGEAALTLARTLGYRSTGTVEFL 264

Query: 250 FDPLSRKVFWLEINV 264
            D  +R  ++LE+N 
Sbjct: 265 LDDETRDFYFLEVNT 279


>gi|238062652|ref|ZP_04607361.1| carbamoyl-phosphate synthase subunit L, ATP-binding [Micromonospora
           sp. ATCC 39149]
 gi|237884463|gb|EEP73291.1| carbamoyl-phosphate synthase subunit L, ATP-binding [Micromonospora
           sp. ATCC 39149]
          Length = 582

 Score = 68.6 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 35/216 (16%), Positives = 71/216 (32%), Gaps = 16/216 (7%)

Query: 59  HGNFGEDGLV-QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117
           +G   E+    QA+L+   + +      A     DK+ ++ +    G P+ P       +
Sbjct: 81  YGFLAENADFAQAVLD-AGLTWIGPTPQAIRDLGDKVTARHIAQRAGAPLVPGTSDPVGS 139

Query: 118 MDSQHLI----SPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSWNHGDQLLIE 169
            D           P  IK   GG   G+ V +  + IP        ++ +     +  +E
Sbjct: 140 PDEVIAFAVDHGLPVAIKAAFGGGGRGLKVARTMEEIPHLFESATREAVAAFGRGECFVE 199

Query: 170 QYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           +Y+D    +   V+ D   +V  +            K             +     +++ 
Sbjct: 200 RYLDQPRHVEAQVLADQHGNVIVVGTRDCSLQRRHQK----LVEEAPAPFLTDAQRRQIH 255

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             A    +  G  G    ++L       + +LE+N 
Sbjct: 256 DSAKAICREAGYHGAGTVEYLV-GTDGTISFLEVNT 290


>gi|221633497|ref|YP_002522722.1| Lysine biosynthesis protein LysX [Thermomicrobium roseum DSM 5159]
 gi|221156389|gb|ACM05516.1| Lysine biosynthesis enzyme LysX [Thermomicrobium roseum DSM 5159]
          Length = 294

 Score = 68.6 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 57/276 (20%), Positives = 108/276 (39%), Gaps = 40/276 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK----PDLAFN 56
           + VL+   S  RE      K    AL + G +V ++  DR +   L   +     DL  +
Sbjct: 6   IGVLL---SHVREEE----KLLLRALSERGAEVVRLY-DRQLVFDLTDERSWPQVDLVLD 57

Query: 57  --VLHGNFGEDGLVQ-AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
             + H      G V   + E   +P T +   A+A++ DK+ + +++++ G+P   +++ 
Sbjct: 58  RCMAHSR----GQVALRLFESAGVP-TINRSQATAIADDKVLTTRLLAAAGIPTLRTLVA 112

Query: 114 N--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS---SWNHGDQLLI 168
                 + +   +  P VIKP+ G     +  +    +    L       S++HG   L 
Sbjct: 113 FDVESALAALERLGYPAVIKPVTGSWGRLLARVNSPAAARAVLQHKRSLGSFHHGVFYLQ 172

Query: 169 EQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227
           E     G ++   V+GD  +  +           +    +    ++  P      +  E+
Sbjct: 173 EYVDKPGRDVRVFVVGDRVVAASYRQADH-----WVTNVARGAVSYPCP------VTPEL 221

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
             LA  A Q IG   I+  D +      +V  LE+N
Sbjct: 222 ADLALRAVQTIGLE-IAGVDLVETADGLEV--LEVN 254


>gi|158423398|ref|YP_001524690.1| propionyl-coenzyme A carboxylase alpha polypeptide [Azorhizobium
           caulinodans ORS 571]
 gi|158330287|dbj|BAF87772.1| propionyl-coenzyme A carboxylase alpha polypeptide [Azorhizobium
           caulinodans ORS 571]
          Length = 675

 Score = 68.6 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 72/220 (32%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E       L    I +      A     DK+ SK+  ++  V   P  L 
Sbjct: 77  AVHPGYGFLSERAAFPRALAEAGIVFIGPNPHAIDAMGDKIESKKAAAAAKVSTVPGYLG 136

Query: 114 ----NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
                         I  P +IK   GG   G+ +      +     ++ S        D+
Sbjct: 137 VIENGEEAAKIADEIGYPVMIKASAGGGGKGMRIAYSRDEVQDGFDRAKSEAKSSFGDDR 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+++ D   +   V+GD   +V  +   +        K             +  +  
Sbjct: 197 VFVEKFIVDPRHIEIQVLGDKHGNVIYLGERECSIQRRNQK----VVEEAPSPLLDEETR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +++   A    +A+G       +F      +  ++LE+N 
Sbjct: 253 RQMGEQAVALAKAVGYDSAGTVEF-VAGQDKSFYFLEMNT 291


>gi|119494803|ref|XP_001264206.1| urea amidolyase, putative [Neosartorya fischeri NRRL 181]
 gi|119412368|gb|EAW22309.1| urea amidolyase, putative [Neosartorya fischeri NRRL 181]
          Length = 1237

 Score = 68.6 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 36/282 (12%), Positives = 86/282 (30%), Gaps = 32/282 (11%)

Query: 33  VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
            S+  +D    + +A      A    +G   E+      +    + +      +      
Sbjct: 57  ASKAYIDGDQIIQIAKQNNANAIIPGYGFLSENADFARAVAAAGLVFVGPSPESIEAFGL 116

Query: 93  KMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQ 148
           K  ++++ +  GVP+ P     I      ++    +  P ++K   GG  +G++    + 
Sbjct: 117 KHTARELATKAGVPIVPGSPGLIDNEDDAVEVAQKLGYPVMLKATAGGGGMGLLTCNSEA 176

Query: 149 SIPLDLLQ-----SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYE 203
            +            + + +    +   Y     +   V G+       I   +       
Sbjct: 177 EVRKSFATVKSRGEALFKNAGVFIERYYPASHHIEVQVFGNGDGKAIFIGERECSIQRRH 236

Query: 204 LKYSSLNSTHVLPAKI---PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260
            K          P+        + K +   A    ++I        ++L D  +   F+L
Sbjct: 237 QK-----VIEECPSPFVSRKPGLRKSLGEAAVRLAESIKYGSAGTIEYLVDDETGAFFFL 291

Query: 261 EINVQPGMTPVSIFPEMAAYAGYS---FR-ELLLWMVEDASC 298
           E+N             +    G +   +  +L+  M++ A  
Sbjct: 292 EMNT-----------RLQVEHGITELCYGMDLVELMLDQADA 322


>gi|153947962|ref|YP_001399384.1| acetyl-CoA carboxylase biotin carboxylase subunit [Yersinia
           pseudotuberculosis IP 31758]
 gi|152959457|gb|ABS46918.1| acetyl-CoA carboxylase, biotin carboxylase [Yersinia
           pseudotuberculosis IP 31758]
          Length = 449

 Score = 68.6 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 39/222 (17%), Positives = 82/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         L  DK+ +   +   GVP  P    
Sbjct: 77  AVHPGYGFLSENADFAEQVERSGFIFIGPRAETIRLMGDKVSAISAMKKAGVPCVPGSDG 136

Query: 112 LVNRFTM---DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
            ++  T         I  P +IK   GG   G+ V++ D+ +   +     ++ +  + D
Sbjct: 137 PLSDDTAKNKAFAKRIGYPVIIKASGGGGGRGMRVVRHDKDLEESINMTRAEAKAAFNND 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+Y++    +   ++ D   +   +A           K          PA  I  +
Sbjct: 197 MVYMEKYLENPRHIEVQILADGQGNAIYLAERDCSMQRRHQK-----VVEEAPAPGITSE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + + +      A   IG RG    +FL+   + + +++E+N 
Sbjct: 252 MRRYIGERCAKACMEIGYRGAGTFEFLY--ENGEFYFIEMNT 291


>gi|319649635|ref|ZP_08003791.1| carbamoyl-phosphate synthase large subunit [Bacillus sp.
           2_A_57_CT2]
 gi|317398797|gb|EFV79479.1| carbamoyl-phosphate synthase large subunit [Bacillus sp.
           2_A_57_CT2]
          Length = 1070

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 30/213 (14%), Positives = 76/213 (35%), Gaps = 20/213 (9%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ--HLISPPYVIKPL 133
            +    + +     + D+ + +Q ++  G+P+                  I  P V++P 
Sbjct: 650 GVKILGTSLENVDRAEDRDKFEQALAELGIPMPKGKTALSVEQAVAVAGEIGYPVVVRPS 709

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS---LDVT 190
                  + ++ K+  +   +  +   N    +LI++Y+ G E+    + D     +   
Sbjct: 710 YVLGGRAMEIVYKEAELLHYMENAVKVNPEHPVLIDRYLTGKEIEVDAISDGENVLIPGI 769

Query: 191 EIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
              + ++  +S        +S  V P   I   I  ++        + +G  G+    ++
Sbjct: 770 MEHIERAGVHS-------GDSIAVYPPQNISEAIKDKLVEYTEKMAKGLGIIGLLNIQYV 822

Query: 250 FDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277
                 +V+ LE+N       P ++ ++  P  
Sbjct: 823 VAK--GEVYVLEVNPRSSRTVPFLSKITNVPMA 853



 Score = 65.1 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 46/296 (15%), Positives = 109/296 (36%), Gaps = 34/296 (11%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL++ G++V  ++ +                       V  ++   +PD     L G  G
Sbjct: 36  ALKEEGYRVILVNSNPATIMTDTEIADAVYIEPLTLEFVSRIIRKERPDALVPTLGGQTG 95

Query: 64  EDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
            +  V+     +LE   +    + + A   + D+   + +++  G PV  S +++     
Sbjct: 96  LNLAVELAESGVLEECGVEILGTKLSAIQKAEDRDLFRNLMNELGEPVPESEIIHNLEEA 155

Query: 120 SQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IE 176
            +  + I  P +++P       G  +   ++ +   +      +   Q L+E+ + G  E
Sbjct: 156 YKFVNRIGYPVIVRPAFTLGGTGGGICHDEEELIEIVTSGLKNSPVTQCLLEKSIAGFKE 215

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +   VM D++ +   I V   + +     ++  +        +    Y+ ++  +    +
Sbjct: 216 IEYEVMRDSNDNA--IVVCNMENFDPVGVHTGDSIVVAPSQTLSDREYQLLRNTSLKIIR 273

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           A+   G        DP S   + +E+N  P ++  S     +   GY   +L   +
Sbjct: 274 ALEIEGGCNVQLALDPDSFNYYIIEVN--PRVSRSS--ALASKATGYPIAKLAAKI 325


>gi|296120555|ref|YP_003628333.1| hypothetical protein Plim_0283 [Planctomyces limnophilus DSM 3776]
 gi|296012895|gb|ADG66134.1| protein of unknown function DUF201 [Planctomyces limnophilus DSM
           3776]
          Length = 360

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 51/226 (22%), Positives = 82/226 (36%), Gaps = 42/226 (18%)

Query: 65  DGLVQA---ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ 121
           DG + A   + E L     +S   A  L+ DK++  + +    +P  P+ LV        
Sbjct: 103 DGTLAAIIQLCEFLGARVHNSTSAAIQLTSDKLQLAEHLEKHRIPTIPTRLVQHAEELGT 162

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
           H     YV+KP+ G  SL + V+   +  P               +++ Y+ G   +  V
Sbjct: 163 HSR---YVVKPIDGAGSLDVFVVNDWREAP---------ETETCQIVQPYLRGRSASVAV 210

Query: 182 MGDASLDVT---------------------EIAVPKSDFYSYELKYSSLNSTHVLPAK-I 219
           +  A +DV                       I  P        LKY        LPA   
Sbjct: 211 IMPALVDVENRDSSGQSSMASIVWPAASQRIIESPGEGHLPASLKYQGGA----LPADEF 266

Query: 220 PLDIYKEVQRLAFLAHQAI-GCRGISRSDFLFDPLSRKVFWLEINV 264
             +    ++ LA  A Q+I G RG +  D ++   S +   +EIN 
Sbjct: 267 SPEERATLEALALKACQSIEGLRGYTGVDLVWPEESAEPLVVEINP 312


>gi|251794896|ref|YP_003009627.1| phosphoribosylaminoimidazole carboxylase, ATPase subunit
           [Paenibacillus sp. JDR-2]
 gi|247542522|gb|ACS99540.1| phosphoribosylaminoimidazole carboxylase, ATPase subunit
           [Paenibacillus sp. JDR-2]
          Length = 388

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 41/209 (19%), Positives = 78/209 (37%), Gaps = 21/209 (10%)

Query: 65  DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQH 122
           D  V A+L  +   Y   G      +  ++R K+ + + GV V P   +        +  
Sbjct: 85  DADVAAML--MSESYVPQGSELLYTTQHRLREKRAIEAAGVRVAPYSEIRSSEELRAAAE 142

Query: 123 LISPPYVIKPLKGG-SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
               P V+K   GG    G  VI+    I       S    G +L++EQ++         
Sbjct: 143 KFGLPCVLKTAMGGYDGKGQWVIRSFDEIEEAYETLSRA--GVELVLEQFIK-------- 192

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTH----VLPAKIPLDIYKEVQRLAFLAHQA 237
             D  L V     P+ +  ++    +          ++PA+I   + +E ++LA    + 
Sbjct: 193 -FDKELSVIAARSPQGEIKAFPAAENIHVENILHLSIVPARIAESVQQEAEKLAIKIAEG 251

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQP 266
           +G  G+   +        ++F  E+  +P
Sbjct: 252 LGVVGLIAVELFLTA-DGELFVNELAPRP 279


>gi|237705996|ref|ZP_04536477.1| acetyl CoA carboxylase [Escherichia sp. 3_2_53FAA]
 gi|91074252|gb|ABE09133.1| acetyl CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli UTI89]
 gi|226899036|gb|EEH85295.1| acetyl CoA carboxylase [Escherichia sp. 3_2_53FAA]
          Length = 462

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 80/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         L  DK+ +   +   GVP  P    
Sbjct: 90  AIHPGYGFLSENANFAEQVERSGFIFIGPKAETIRLMGDKVSAIAAMKKAGVPCVPGSDG 149

Query: 112 -LVNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
            L +    +      I  P +IK   GG   G+ V++ D  +   +     ++ +    D
Sbjct: 150 PLGDDMDKNRAIAKRIGYPVIIKASGGGGGRGMRVVRSDAELAQSISMTRAEAKAAFSND 209

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+Y++    +   V+ D   +   +A           K          PA  I  +
Sbjct: 210 MVYMEKYLENPRHVEIQVLADGQGNAIYLAERDCSMQRRHQK-----VVEEAPAPGITPE 264

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + + +      A   IG RG    +FLF   + + +++E+N 
Sbjct: 265 LRRYIGERCAKACVDIGYRGAGTFEFLF--ENGEFYFIEMNT 304


>gi|27378749|ref|NP_770278.1| acetyl-CoA carboxylase biotin carboxylase subunit [Bradyrhizobium
           japonicum USDA 110]
 gi|27351898|dbj|BAC48903.1| unnamed protein product [Bradyrhizobium japonicum USDA 110]
          Length = 451

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 34/201 (16%), Positives = 75/201 (37%), Gaps = 18/201 (8%)

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVNRFTMDS-QHLISPPYV 129
             + +            DK+ +K+ +   GVP  P     +  +   + +    I  P +
Sbjct: 98  AGLAFIGPPADCIRTMGDKVAAKRAMRLAGVPCVPGPDSALPEDPSEVHAIARDIGYPVI 157

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN----HGDQLLIEQYVD-GIELTCGVMGD 184
           IK   GG   G+ +++ + ++   L  + +          + IE++++    +   V+ D
Sbjct: 158 IKAAGGGGGRGMRIVRSEGALDDALALTRAEASKAFKNAAVYIEKFLEKPRHIEIQVLCD 217

Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGI 243
              +   +           L+  +       PA  I   + + V      A + IG RG 
Sbjct: 218 QHDNHLWL-----GDRDCSLQRRNQKVVEEAPAPGIDRALIERVGASCVEACRRIGYRGA 272

Query: 244 SRSDFLFDPLSRKVFWLEINV 264
              +FL+   + + F++E+N 
Sbjct: 273 GTFEFLY--ENGQFFFIEMNT 291


>gi|283852371|ref|ZP_06369641.1| Carbamoyl-phosphate synthase L chain ATP-binding [Desulfovibrio sp.
           FW1012B]
 gi|283572219|gb|EFC20209.1| Carbamoyl-phosphate synthase L chain ATP-binding [Desulfovibrio sp.
           FW1012B]
          Length = 1231

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 39/245 (15%), Positives = 88/245 (35%), Gaps = 27/245 (11%)

Query: 35  QIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSM 91
            +D+D  +    AH    +    +H  +G   ED           I +  S   A     
Sbjct: 72  YLDIDGIIKKAKAHG---VV--AIHPGWGFASEDAEFPRKCAEAGIIFIGSSAEAMQSLG 126

Query: 92  DKMRSKQVVSSCGVPVCP----SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147
           +K+  +++    G+PV P    S+ +      +   I  P ++K   GG   GI  I  +
Sbjct: 127 NKVDVRRLAMGLGIPVVPGSEGSVTIPEARAIAAK-IGFPIMLKAEGGGGGRGIYEIYSE 185

Query: 148 QSIPLDLLQSSSWNH----GDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSY 202
             +     ++S+         +L +E+ +     +   V  D   +V        D    
Sbjct: 186 AQLESAFSKASAMAQASFGNPRLFVEKLLTSVRHIEIQVAADMHGNVFAF-----DERDC 240

Query: 203 ELKYSSLNSTHVLPAK---IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
            ++ +      + P+    +  ++ + ++  +    +  G   ++  +FL D    + + 
Sbjct: 241 SVQRNHQKLVEITPSPWRGMTDELRQRLKDYSERLVRETGYYSLATVEFLVDA-DGEPYL 299

Query: 260 LEINV 264
           +E+N 
Sbjct: 300 IEVNT 304


>gi|224541435|ref|ZP_03681974.1| hypothetical protein CATMIT_00597 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525627|gb|EEF94732.1| hypothetical protein CATMIT_00597 [Catenibacterium mitsuokai DSM
           15897]
          Length = 1065

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 54/314 (17%), Positives = 111/314 (35%), Gaps = 37/314 (11%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQID-------VDRSVGL--------------V 45
           G ++E + +   G     AL++ G +V  I+        D+ +                +
Sbjct: 21  GQAAEFDYA---GTQACRALKEEGIEVVLINSNPATIMTDKDIADHVYIEPLTVPVVKNL 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   KPD     L G    +  +    +  LE   +    +      L+ D++  K+++ 
Sbjct: 78  ILKEKPDSILPTLGGQNALNIAMALDDEGFLEAHNVRTIGTNTTTIKLAEDRLEFKELME 137

Query: 102 SCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
               PV  S +VN     ++    I  P V++P       G  + +  + +         
Sbjct: 138 RIHEPVAASTVVNHVDDALEFAEKIGYPVVVRPAYTLGGTGGGIAETPEELHDICTNGLR 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   Q LIE+ + G  E+   VM D + +   I V   +       ++  +        
Sbjct: 198 LSRVSQCLIERCIAGWKEIEYEVMRDGNGN--CITVCNMENVDPVGVHTGDSIVVAPSQT 255

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278
           +    Y+ ++  A     A+  +G     F  +P S +   +E+N  P ++  S     +
Sbjct: 256 LGDKEYQMLRSSALNIITALNIKGGCNVQFALNPNSFEYCVIEVN--PRVSRSS--ALAS 311

Query: 279 AYAGYSFRELLLWM 292
              GY   +L   +
Sbjct: 312 KATGYPIAKLAAKI 325



 Score = 63.6 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 31/206 (15%), Positives = 76/206 (36%), Gaps = 15/206 (7%)

Query: 69  QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISP 126
           Q ++++  +P   +   +   + D+ R  +V+  C +       V      ++  + +  
Sbjct: 645 QDLMDM-GVPILGTSADSVDAAEDRERFDEVLEKCEIDRPRGATVFTVDEALEVANKLGY 703

Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186
           P +++P       G+ +   D  I   +   +       +LI++Y+ G E+    + D +
Sbjct: 704 PVLVRPSYVLGGAGMEIALNDGDIKKFMKIINRQFQEHPILIDKYLSGKEVEVDAVCDEN 763

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISR 245
             +    +   +           +S  V P + I  +I K +        +A+   G+  
Sbjct: 764 GVLIPGVMEHVERAGVHS----GDSISVYPPQKIKPEIKKVICDYTQRLAKALHVIGLIN 819

Query: 246 SDFLFDPLSRKVFWLEIN-----VQP 266
             F+      +V+ +E+N       P
Sbjct: 820 IQFIV--YEDEVYVIEVNPRSSRTIP 843


>gi|262274895|ref|ZP_06052706.1| carbamoyl-phosphate synthase large chain [Grimontia hollisae CIP
           101886]
 gi|262221458|gb|EEY72772.1| carbamoyl-phosphate synthase large chain [Grimontia hollisae CIP
           101886]
          Length = 1077

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 35/197 (17%), Positives = 76/197 (38%), Gaps = 10/197 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYV 129
           LE   +P   +   A   + D+ R +  V   G+    +  V       +    I  P V
Sbjct: 653 LEAAGVPIIGTSPDAIDRAEDRERFQAAVERLGLKQPANATVTALEQAVEKAREIGYPLV 712

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  +  +     ++ S ++   +L+++++ D  E+    + D    
Sbjct: 713 VRPSYVLGGRAMEIVYDESDLRRYFNEAVSVSNESPVLLDRFLDDATEVDVDAICDGERV 772

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           V    +   +    +    S +S   LPA  +  DI  E++R        +G RG+  + 
Sbjct: 773 VIGGIMEHIE----QAGVHSGDSACSLPAYTLSQDIQDEMRRQVEKLAFELGVRGLMNTQ 828

Query: 248 FLFDPLSRKVFWLEINV 264
           F       +V+ +E+N 
Sbjct: 829 FAV--KDGEVYLIEVNP 843



 Score = 59.0 bits (142), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 96/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D +              V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIQWEVVRNIIAKERPDAVLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      +L    +    +   A   + D+ R  + + S G+    +  
Sbjct: 89  TMGGQTALNCALDLEKHGVLAEFGVEMIGATADAIDKAEDRSRFDKAMKSIGLECPRAGT 148

Query: 113 VNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                   +   ++  P +I+P       G  +    +       +    +  ++LLI++
Sbjct: 149 AKSMEEAYNVLDMVGFPCIIRPSFTMGGTGGGIAYNKEEFDEICRRGLDLSPTNELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + + +   ++   D           +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENVDAMGIHT----GDSITVAPAQTLTDKEYQLM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P   ++  +E+N 
Sbjct: 265 RNASLAVLREIGVETGGSNVQFGINPKDGRMVIIEMNP 302


>gi|260463415|ref|ZP_05811615.1| D-alanine:D-lactate ligase-like protein [Mesorhizobium
           opportunistum WSM2075]
 gi|259030740|gb|EEW32016.1| D-alanine:D-lactate ligase-like protein [Mesorhizobium
           opportunistum WSM2075]
          Length = 352

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 57/300 (19%), Positives = 105/300 (35%), Gaps = 42/300 (14%)

Query: 7   GISSEREVSLSS--------GKACASALEDA----GFKVSQIDVDRSVGLVLAHLKPD-- 52
           G +SER   ++S        G+    AL++A    G   + + +D     VLA   P   
Sbjct: 26  GHASERAAEIASYLAQSTDLGQE-FDALDEACRVRGLSFTPVLLD-DTAHVLAGEDPATT 83

Query: 53  LAFNVLHG-NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L + +  G  +   G   A+  L       +     AL  DK RS  V+ + G+PV  + 
Sbjct: 84  LVWTLTDGIAYFRGGAAPALARLGGFKTIGADDALFALCQDKFRSGAVLGALGLPVPQAG 143

Query: 112 LVNRFTMDSQHLISPP-YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS--WNHGDQLLI 168
           L        +   S   + +KP + G+ +GI    +   +   L  S      + D +++
Sbjct: 144 LARNGQWLVEPPASAAGWFVKPNRLGAKIGIWPDSRSSDLGHALELSRRVFAAYRDDVVV 203

Query: 169 EQYVDGIELTCGVMG---DASLDVTEIAVPKSDFYSYELK------YSSLNS-------- 211
           + YV G  +    +G   +  ++   I    S    ++        Y    +        
Sbjct: 204 QPYVAGRNVRASFLGLTPEVGVEALGIVFVDSGA-DFQTMADSLALYGETGAAAKAAGLY 262

Query: 212 ---THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268
                V  A +       ++ +A      +G R +   D         +  +E  V PG+
Sbjct: 263 AEPELVAVADVQPAADAGIRAIAARLMSGLGLRDVFSIDLRV-EADDTLHLIEFEVCPGL 321


>gi|218184383|gb|EEC66810.1| hypothetical protein OsI_33225 [Oryza sativa Indica Group]
          Length = 1768

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 40/230 (17%), Positives = 76/230 (33%), Gaps = 29/230 (12%)

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--------- 110
           G+  E+  +   L+   I +      A A   DK+ S  +  + GVP  P          
Sbjct: 131 GHASENPELPDALKEKGIIFLGPPSAAMAALGDKIGSSLIAQAAGVPTLPWSGSHVKIPP 190

Query: 111 ---------------ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
                          +      + S  ++  P +IK   GG   GI  +  D  +     
Sbjct: 191 ESCNSIPEEMYRSACVSTTEEAVASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFK 250

Query: 156 QSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHV 214
           Q      G  + I +       L   ++ D   +V  +            K        V
Sbjct: 251 QVQGEVPGSPIFIMKVASQSRHLEVQLLCDKHGNVAALHSRDCSVQRRHQKIIEEGPITV 310

Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            P++   ++ +  +RLA   H      G +  ++L+   + + ++LE+N 
Sbjct: 311 APSETVKELEQAARRLAKCVHYV----GAATVEYLYSMETGEYYFLELNP 356


>gi|147828391|emb|CAN70986.1| hypothetical protein VITISV_039270 [Vitis vinifera]
          Length = 222

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 29/127 (22%), Positives = 52/127 (40%), Gaps = 7/127 (5%)

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216
           +  ++L+ E +   +E+T GV+G      SL  +       D  S E K+      ++ P
Sbjct: 73  DXANRLIWEGHSRWVEVTVGVVGKRGSMHSLTPSVTVKESGDILSLEEKFQGGTGINLTP 132

Query: 217 AKIP---LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273
             +        +  ++   L    +   G SR D   +  S +V  +E+N  PGMTP ++
Sbjct: 133 PPLSIISKAALESCKQRIELIANTLQLEGFSRIDAFVNVDSGEVLIIEVNTVPGMTPSTV 192

Query: 274 FPEMAAY 280
               A  
Sbjct: 193 LIHQALA 199


>gi|148979738|ref|ZP_01815675.1| carbamoyl-phosphate synthase large subunit [Vibrionales bacterium
           SWAT-3]
 gi|145961621|gb|EDK26920.1| carbamoyl-phosphate synthase large subunit [Vibrionales bacterium
           SWAT-3]
          Length = 1076

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 48/278 (17%), Positives = 97/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D D              V  ++A  KPD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPDMADATYIEPIQWEVVRNIIAKEKPDAVLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV--PVCPS 110
            + G    +  +      +LE   +    +   A   + D+ R  + + S G+  P   +
Sbjct: 89  TMGGQTALNCALDLEKHGVLEEFGVEMIGATADAIDKAEDRSRFDKAMKSIGLECPRADT 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                       ++  P +I+P       G  +    +       +    +  ++LLI++
Sbjct: 149 AKTMEEAYGVLDMVGFPCIIRPSFTMGGTGGGIAYNKEEFEEICRRGLDLSPTNELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + + +   A+   D           +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKADNCIIVCAIENFDPMGIHT----GDSITVAPAQTLTDKEYQLM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P   ++  +E+N 
Sbjct: 265 RNASLAVLREIGVETGGSNVQFGINPKDGRMVIIEMNP 302



 Score = 62.1 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 34/196 (17%), Positives = 75/196 (38%), Gaps = 8/196 (4%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH--LISPPYV 129
           LE   +P   +   A   + D+ R +  V   G+    +  V       +    I  P V
Sbjct: 653 LEAAGVPIIGTSPDAIDRAEDRERFQVAVDRLGLLQPENATVTTMEQAVEKSREIGFPLV 712

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           ++P        + ++  +Q +     ++ S ++   +L++ ++D       V  DA  D 
Sbjct: 713 VRPSYVLGGRAMEIVYDEQDLRRYFNEAVSVSNESPVLLDSFLD---DAVEVDIDAICDG 769

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
             + +     +  +    S +S   LPA  +  +I   ++         +G RG+  + F
Sbjct: 770 ERVVIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMREQVEKLAFELGVRGLMNTQF 829

Query: 249 LFDPLSRKVFWLEINV 264
                + +V+ +E+N 
Sbjct: 830 AV--KNNQVYLIEVNP 843


>gi|88813678|ref|ZP_01128906.1| Biotin/lipoyl attachment:Carbamoyl-phosphate synthase L chain,
           ATP-binding:Carbamoyl-phosphate synthetase large
           [Nitrococcus mobilis Nb-231]
 gi|88789065|gb|EAR20204.1| Biotin/lipoyl attachment:Carbamoyl-phosphate synthase L chain,
           ATP-binding:Carbamoyl-phosphate synthetase large
           [Nitrococcus mobilis Nb-231]
          Length = 665

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 79/221 (35%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+           + +      A A    K  +K+++   GVP+ P    
Sbjct: 77  AIHPGYGFLAENADFAQACADAGLVFIGPPAAAIAAMGSKSAAKRLMGEAGVPLVPGYHG 136

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
                D    +      P +IKP  GG   G+  + +  +    L  +          D+
Sbjct: 137 EAQDPDTLAQAARETGYPVLIKPTAGGGGKGMHRVDEADAFADALAAAKREAAASFGDDR 196

Query: 166 LLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           +LIE+Y ++   +   V  D    V              ++          PA  +   +
Sbjct: 197 MLIEKYLLEPRHIEIQVFADRHGGVV-----HLFERDCSVQRRYQKVLEEAPAPGVSESL 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +E+ + A  A QAIG  G    +F+ +P     +++E+N 
Sbjct: 252 RREMGQAAVQAAQAIGYVGAGTVEFIVEP-GGAFYFMEMNT 291


>gi|329298265|ref|ZP_08255601.1| alpha-L-glutamate ligase, RimK family protein [Plautia stali
           symbiont]
          Length = 316

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 42/233 (18%), Positives = 92/233 (39%), Gaps = 27/233 (11%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGV--PVCPSILVNRFTMDSQHLISP-PY 128
            E+L   Y  +  +A   + DK+RS Q+++  G+  PV         T D   ++   P 
Sbjct: 80  FEMLG-SYPLNESVAITRARDKLRSLQLLAREGIDMPVTGFASSPDDTQDVIAMVGGAPL 138

Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD---GIELTCGVMGDA 185
           V+K ++G   +G+++ +  Q+     +  +       +L+++++    G ++ C V+GD 
Sbjct: 139 VVKLVEGTQGIGVVMAETRQAAES--VIDAFRGLNAHILVQEFIKEARGRDIRCLVIGDE 196

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
            +   E    + DF S   +  S  +  +           + + +A      +G      
Sbjct: 197 VVAAIEREAKEGDFRSNLHRGGSARAVTI---------TDQEREIAVKTATTLGLAVAG- 246

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
            D      +R    +E+N  PG+  +          G     +++  +E  +C
Sbjct: 247 VD--ILRANRGPLVMEVNASPGLEGI------EGSTGLDIAAMMIRWIEQHAC 291


>gi|301113592|ref|XP_002998566.1| pyruvate carboxylase, mitochondrial precursor [Phytophthora
           infestans T30-4]
 gi|262111867|gb|EEY69919.1| pyruvate carboxylase, mitochondrial precursor [Phytophthora
           infestans T30-4]
          Length = 657

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 72/222 (32%), Gaps = 20/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+           I +            DK  ++++     VPV P    
Sbjct: 104 AIHPGYGFLSENVGFAEQCAKNGIKFVGPTPENLQRFGDKTAAREIAIEQKVPVVPGTDG 163

Query: 114 NRFTMDSQHL-----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGD 164
               +D         +  P +IK   GG   G+ V+   + +  +      ++ +     
Sbjct: 164 PVHNLDEARAFIDSGVGYPVIIKASMGGGGRGMRVVNSAEELEENFERASSEALAAFGDG 223

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLD 222
            + IE+YVD    +   ++GD   +V  +           ++          PA  +   
Sbjct: 224 TVFIERYVDRPRHIEVQILGDGKGNVVHLY-----HRDCSVQRRHQKVLETAPAVGLDPK 278

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             K +   A     A         +FL D   R  +++E+N 
Sbjct: 279 TEKAMIDDAVRLTSAAKYLNAGTVEFLVDQQGRH-YFIEVNP 319


>gi|227546801|ref|ZP_03976850.1| carbamoyl-phosphate synthase (glutamine-hydrolyzing)
           [Bifidobacterium longum subsp. infantis ATCC 55813]
 gi|227212763|gb|EEI80644.1| carbamoyl-phosphate synthase (glutamine-hydrolyzing)
           [Bifidobacterium longum subsp. infantis ATCC 55813]
 gi|291516174|emb|CBK69790.1| carbamoyl-phosphate synthase large subunit [Bifidobacterium longum
           subsp. longum F8]
          Length = 1127

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 44/288 (15%), Positives = 103/288 (35%), Gaps = 36/288 (12%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQIDVDRS---------------------VGLV 45
           G ++E + S   G      L + G +V  ++ + +                     +  +
Sbjct: 21  GQAAEFDYS---GTQACRVLREEGIRVILVNSNPATIMTDPEMADATYIEPIATPILEQI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +A  +PD     L G    +  +      +L+   +    + + A     D+   K+VV 
Sbjct: 78  IAKERPDALLPTLGGQTALNAAMALGEAGVLKKYNVELIGASLEAIDRGEDRELFKKVVD 137

Query: 102 SCGVPVCPSILVNRFTMDS--QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G     S + +              P V++P      LG  +   ++ +         
Sbjct: 138 EAGAESARSDIAHSIEEVDKIAEKFGYPLVVRPSFTMGGLGSGIAHNEEELHRIAGAGIH 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
           ++  D++LIE+ ++G  E    +M D + +V  +   ++      +   + +S  V P  
Sbjct: 198 YSPTDEVLIEEGIEGWKEFELELMRDRNDNVVVVCPIENVD---PVGVHTGDSITVAPCF 254

Query: 219 -IPLDIYKEVQRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
            +    Y++++ +     + +G   G     F   P + ++  +E+N 
Sbjct: 255 TLTDREYQKLRDIGIAIIRGVGVDTGGCNIQFAVHPDTGRIIVIEMNP 302



 Score = 49.3 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 32/233 (13%), Positives = 76/233 (32%), Gaps = 29/233 (12%)

Query: 67  LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTMDSQHLI 124
            + A L+   +P   +   +  L+ ++    +V+    +        L      ++ H I
Sbjct: 651 SLAARLKAAGVPILGTTPESIDLAENRELFGEVLKKAEMNAPRYGTALSLEEAKEAAHRI 710

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
             P +++P       G+ ++  D+ +   + ++ +    D +     V G   +  ++  
Sbjct: 711 GYPVLVRPSYVLGGRGMEIVYDDKQLNKYVDRALTEAKADTV-----VSGRLPSPLLIDK 765

Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK--------------IPLDIYKEVQRL 230
              D  EI V     +  E  Y      HV  A               +  D  + ++  
Sbjct: 766 FLQDAIEIDV--DALFDGEELYIGGIMEHVEEAGVHSGDAACTLPPSTLSDDQIRRLREG 823

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283
            +   +    +G+    + F      ++ +E N +   T     P  +   G 
Sbjct: 824 TYAIAKGCHVQGLINVQYAFMA--NTLYVIEANPRASRT----VPFASKATGV 870


>gi|75675796|ref|YP_318217.1| carbamoyl-phosphate synthetase large chain [Nitrobacter
           winogradskyi Nb-255]
 gi|74420666|gb|ABA04865.1| Carbamoyl-phosphate synthetase large chain [Nitrobacter
           winogradskyi Nb-255]
          Length = 668

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 32/215 (14%), Positives = 74/215 (34%), Gaps = 15/215 (6%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
           +G   E+           + +             K  ++ ++    VP+ P         
Sbjct: 90  YGFLSENAGFAQACADAGLVFVGPTAAMMTAMGTKSDARALMQKADVPLVPGYHGEAQDE 149

Query: 119 ----DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQLLIEQ 170
               ++   I  P ++K   GG   G+ +++    +   ++    ++ +    +++LIE+
Sbjct: 150 ATLRNTADRIGYPVLVKASGGGGGRGMRIVRSAAELAPAIVSARREAGAAFGDERMLIEK 209

Query: 171 YVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           YV+    +   V+GD+  ++  +   +        K             +       V  
Sbjct: 210 YVENPRHIEVQVIGDSHGNLLSLFERECTLQRRHQK----VIEEAPSPTLNAAQRDRVCE 265

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            A  A   +   G    +F+ D   R VF++E+N 
Sbjct: 266 AARKAAAIVNYIGAGTVEFVSD--GRDVFFIEMNT 298


>gi|28377385|ref|NP_784277.1| hypothetical protein lp_0493 [Lactobacillus plantarum WCFS1]
 gi|28270217|emb|CAD63118.1| unknown [Lactobacillus plantarum WCFS1]
          Length = 413

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 35/198 (17%), Positives = 80/198 (40%), Gaps = 18/198 (9%)

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSS 138
            +   A+  + +K  ++   +  GVP     +       +++   I  P ++KP    SS
Sbjct: 98  GNSYFATKCARNKDLARIQYAKKGVPSAKFAVAKTIDEALEASKKIGFPLILKPTNTASS 157

Query: 139 LGIIVIKKDQSIPLDLLQSSS-------WNHGDQLLIEQYVDGIELTCG-VMGDASLDVT 190
           + +  +  +Q +    LQ S        +   ++ ++E+++ G E +    + +  +   
Sbjct: 158 IDVFYVSDEQQLRERFLQISQLKQSYMHFKVREEYILEEFMSGPEFSVELFLSNNEIAFV 217

Query: 191 EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC-RGISRSDFL 249
           E+    +    Y      +   HV P  + +   KE+   A+ A +A+G   G + ++  
Sbjct: 218 EVTEKHTTKPPY-----FVELMHVFPTTVDVAYKKEIINTAYCAVRALGFHNGPTHAEVK 272

Query: 250 FDPLSRKVFWLEINVQPG 267
                 +V   E+N +PG
Sbjct: 273 LTDAGARVV--EVNGRPG 288


>gi|71020597|ref|XP_760529.1| hypothetical protein UM04382.1 [Ustilago maydis 521]
 gi|46100424|gb|EAK85657.1| hypothetical protein UM04382.1 [Ustilago maydis 521]
          Length = 756

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 51/263 (19%), Positives = 94/263 (35%), Gaps = 36/263 (13%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
           ++H  +G   E+     +L+   I +      A      K  SK ++ +  VP  P    
Sbjct: 135 MVHPGYGFLSENASFAKLLQDSRITFIGPPPSAIDAMGSKSASKDIMLAANVPCVPGYHG 194

Query: 114 NRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL--LQSSSWNH--GDQ 165
            +   +S       I  P +IK +KGG   G+ +          L   Q  +        
Sbjct: 195 LQQDAESLASEADKIGYPVLIKAVKGGGGKGMKIACTRDEFADALSSAQREALKSFGDAT 254

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           +LIE+Y+     +   V  D   +   I+          ++          PA  +   +
Sbjct: 255 VLIEKYLTAPRHVEVQVFADTHGNAVYISE-----RDCSVQRRHQKIIEEAPAPHLDARL 309

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLS-RKVFWLEINV-----QPGMTPVSIFPEM 277
             E+   A  A +A+G  G    +F+ D    ++ +++E+N       P         EM
Sbjct: 310 RTELGEKAVAAAKAVGYVGAGTVEFILDAQRPQEFYFMEMNTRLQVEHP-------VTEM 362

Query: 278 AAYAGYSFRELLLWMVEDASCLR 300
              +G    +L+ W +E A+  R
Sbjct: 363 --VSGL---DLVEWQLEVAAGNR 380


>gi|329295750|ref|ZP_08253086.1| acetyl-CoA carboxylase biotin carboxylase subunit [Plautia stali
           symbiont]
          Length = 449

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 39/222 (17%), Positives = 82/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         L  DK+ +   +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAEQVERSGFIFIGPKADTIRLMGDKVSAINTMKKAGVPTVPGSHG 136

Query: 112 -LVNRFTMD--SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
            L +    +      I  P +IK   GG   G+ V++ D+ +   +     ++ +  + D
Sbjct: 137 SLTDDMEKNCAIAKRIGYPVIIKASGGGGGRGMRVVRSDKDLEQSINMTKAEAKAAFNND 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E++++    +   V+ D   +   +A           K          PA  I  +
Sbjct: 197 MVYMEKFLENPRHIEIQVLADGQGNAIYLAERDCSMQRRHQK-----VVEEAPAPGITPE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + + +      A   IG RG    +FL+   + + +++E+N 
Sbjct: 252 LRRYIGERCSNACVEIGYRGAGTFEFLY--ENGEFYFIEMNT 291


>gi|117956423|gb|ABK58727.1| carbamoyl-phosphate synthase [Coniothyrium minitans]
          Length = 1170

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 58/292 (19%), Positives = 104/292 (35%), Gaps = 41/292 (14%)

Query: 5   MGGIS----SEREVSLSSGKACASALEDAGFKVSQIDVD--------------------- 39
            GG+S     E + S   G     AL++AG K   I+ +                     
Sbjct: 100 AGGLSIGQAGEFDYS---GSQALKALKEAGVKSVLINPNIATIQTSHVLADEIYYLPVTP 156

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMR 95
             V  V+   KPD  F    G    +  VQ     I E   +    + I     S D+  
Sbjct: 157 EYVEYVIQKEKPDGIFLSFGGQTALNLGVQMNKKGIFEKYGVKVLGTSIKTLETSEDRDL 216

Query: 96  SKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153
             + +    +P+  SI VN     +D+   +  P +++       LG       + +   
Sbjct: 217 FARALDEIDIPIAKSIAVNSVEEALDAAEKVGYPIIVRAAYALGGLGSGFANNAEELR-- 274

Query: 154 LLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212
            L + S +   Q+L+E+ + G  E    V+ DA+ +   I V   + +   L   + +S 
Sbjct: 275 NLSARSLSLSPQILVEKSLKGWKEAEYEVVRDAADN--CITVCNMENFD-PLGVHTGDSI 331

Query: 213 HVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            V P++    D Y  ++  +    + +G  G     +   P       +E+N
Sbjct: 332 VVSPSQTFSDDEYHMLRSASIKIVRHLGVVGECNVQYCLQPDGLDYRVIEVN 383



 Score = 54.0 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/168 (15%), Positives = 60/168 (35%), Gaps = 12/168 (7%)

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ--HLISPPYVIKPLKGGSS 138
            +       + D+ +   ++ S GV       +  +    +    +  P +++P    S 
Sbjct: 743 GTDPADIDKAEDRHKFSSILDSIGVDQPAWKELTSYEDAKKFVEQVGYPVLVRPSYVLSG 802

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL----TCGVMGDASLDVTEIAV 194
             + VI+ +  +   L  +S+ +    ++I QY+DG E          G   +      V
Sbjct: 803 AAMTVIRSENELQEKLTAASNVSPDHPVVITQYIDGAEEIDCDAVASNGKVIVHAVSEHV 862

Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
             +  +S +       +  + P  +   I + V+ +A    +A    G
Sbjct: 863 ENAGVHSGDA------TLVLPPVNLDDRIKERVREIADKVAKAWNITG 904


>gi|323466072|gb|ADX69759.1| Phosphoribosylglycinamide formyltransferase 2 [Lactobacillus
           helveticus H10]
          Length = 392

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 42/208 (20%), Positives = 84/208 (40%), Gaps = 14/208 (6%)

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQ 121
           E+  +QA+ ++ +      G     ++  ++R K  + S G    P + V       ++ 
Sbjct: 90  ENVDLQALKDVADKVKIPQGTNLLYITKHRLREKNFLRSAGCMTAPYLPVKNMADLKEAI 149

Query: 122 HLISPPYVIKPLKGG-SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
             I    V+K  +GG    G  V+K D  +  +          D +L       +E +  
Sbjct: 150 KKIGYNCVLKTCEGGYDGHGQEVLKSDADLKNNAHIKEILATRDCILEGWVPFKVEASVM 209

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHV--LPAKIPLDIYKEVQRLAFLAHQAI 238
           V  +A  +VT   V ++        Y++    H+  +PA++  +IY + Q +A    +AI
Sbjct: 210 VARNAKGEVTVFPVSEN--------YNADEILHISIVPARVSKEIYAKAQAIAKQIAEAI 261

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQP 266
             RGI   +      +  ++  E+  +P
Sbjct: 262 HLRGILGVELFIL-DNGDIYVNELAPRP 288


>gi|289209403|ref|YP_003461469.1| acetyl-CoA carboxylase, biotin carboxylase [Thioalkalivibrio sp.
           K90mix]
 gi|288945034|gb|ADC72733.1| acetyl-CoA carboxylase, biotin carboxylase [Thioalkalivibrio sp.
           K90mix]
          Length = 449

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 81/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---S 110
            +H  +G   E+      +E     +         L  DK+ +KQ +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAERVESSGFAFIGPRAETIRLMGDKVSAKQAMLDAGVPCVPGSGG 136

Query: 111 ILVNRFTMD--SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGD 164
            L +    +      I  P +IK   GG   G+ V+  + ++   +     ++      D
Sbjct: 137 ALTDDADANMALAREIGYPVIIKAAAGGGGRGMRVVHTEGALLHSISLTRNEAQQGFGND 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            L +E+Y++    +   ++ D+  +   +            K          PA  I  +
Sbjct: 197 TLYMEKYLEHPRHVEFQILSDSHGNAICLGERDCSMQRRHQK-----VIEEAPAPGITDE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             + +      A Q IG RG    +FL+   + + +++E+N 
Sbjct: 252 QRQAMSERLVRACQEIGYRGAGTFEFLY--ENGEFYFIEMNT 291


>gi|239620781|ref|ZP_04663812.1| carbamoyl-phosphate synthase [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|239516357|gb|EEQ56224.1| carbamoyl-phosphate synthase [Bifidobacterium longum subsp.
           infantis CCUG 52486]
          Length = 1127

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 44/288 (15%), Positives = 103/288 (35%), Gaps = 36/288 (12%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQIDVDRS---------------------VGLV 45
           G ++E + S   G      L + G +V  ++ + +                     +  +
Sbjct: 21  GQAAEFDYS---GTQACRVLREEGIRVILVNSNPATIMTDPEMADATYIEPIATPILEQI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +A  +PD     L G    +  +      +L+   +    + + A     D+   K+VV 
Sbjct: 78  IAKERPDALLPTLGGQTALNAAMALGEAGVLKKYNVELIGASLEAIDRGEDRELFKKVVD 137

Query: 102 SCGVPVCPSILVNRFTMDS--QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G     S + +              P V++P      LG  +   ++ +         
Sbjct: 138 EAGAESARSDIAHSIEEVDKIAEKFGYPLVVRPSFTMGGLGSGIAHNEEELHRIAGAGIH 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
           ++  D++LIE+ ++G  E    +M D + +V  +   ++      +   + +S  V P  
Sbjct: 198 YSPTDEVLIEEGIEGWKEFELELMRDRNDNVVVVCPIENVD---PVGVHTGDSITVAPCF 254

Query: 219 -IPLDIYKEVQRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
            +    Y++++ +     + +G   G     F   P + ++  +E+N 
Sbjct: 255 TLTDREYQKLRDIGIAIIRGVGVDTGGCNIQFAVHPDTGRIIVIEMNP 302



 Score = 51.7 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/233 (13%), Positives = 76/233 (32%), Gaps = 29/233 (12%)

Query: 67  LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTMDSQHLI 124
            + A L+   +P   +   +  L+ ++    +V+    +        L      ++ H I
Sbjct: 651 SLAARLKAAGVPILGTTPESIDLAENRELFGEVLKKAEMNAPRYGTALSLEEAKEAAHRI 710

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
             P +++P       G+ ++  D+ +   + ++ +    D +     V G   +  ++  
Sbjct: 711 GYPVLVRPSYVLGGRGMEIVYDDKQLNKYVDRALAEAKADTV-----VSGRLPSPLLIDK 765

Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK--------------IPLDIYKEVQRL 230
              D  EI V     +  E  Y      HV  A               +  D  + ++  
Sbjct: 766 FLQDAIEIDV--DALFDGEELYIGGIMEHVEEAGVHSGDAACTLPPSTLSDDQIRRLREG 823

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283
            +   +    +G+    + F      ++ +E N +   T     P  +   G 
Sbjct: 824 TYAIAKGCHVQGLINVQYAFMA--NTLYVIEANPRASRT----VPFASKATGV 870


>gi|108757385|ref|YP_632061.1| pyruvate carboxylase [Myxococcus xanthus DK 1622]
 gi|108461265|gb|ABF86450.1| pyruvate carboxylase [Myxococcus xanthus DK 1622]
          Length = 1164

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 34/223 (15%), Positives = 77/223 (34%), Gaps = 23/223 (10%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       E   I +            DK+ +K +  +CGVPV P I +
Sbjct: 82  AIHPGYGFLSENAAFAEACERRGIRFIGPRSDVVRTMGDKVAAKHLADACGVPVVPGITL 141

Query: 114 NRFTMDSQHLI-------SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH---- 162
                               P ++K   GG   G+ V+++ +++   L  + S       
Sbjct: 142 EGDDAHVLEQARAFFAKQGGPILVKAAHGGGGRGMRVVREAKALEDALASARSEAKSAFG 201

Query: 163 GDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIP 220
              + +E++++    +   ++GD   ++              ++        + PA  + 
Sbjct: 202 SSSVFLERFLEHVRHIEVQLLGDLHGNIV-----HLHERDCSVQRRHQKVIEIAPAPNLA 256

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
             + + +   A    +  G      ++FL        +++E N
Sbjct: 257 PAVKEAICDAAVRLARKAGYTSAGTAEFLV--AGDAFYFIECN 297


>gi|169773675|ref|XP_001821306.1| pyruvate carboxylase [Aspergillus oryzae RIB40]
 gi|238491688|ref|XP_002377081.1| pyruvate carboxylase, putative [Aspergillus flavus NRRL3357]
 gi|83769167|dbj|BAE59304.1| unnamed protein product [Aspergillus oryzae]
 gi|220697494|gb|EED53835.1| pyruvate carboxylase, putative [Aspergillus flavus NRRL3357]
          Length = 1193

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 41/221 (18%), Positives = 84/221 (38%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
           ++H  +G   E+      +E   I +            DK+ ++++   C VPV P    
Sbjct: 120 LIHPGYGFLSENADFARKVENAGIVFVGPTPDTIDSLGDKVSARRLAIKCEVPVVPGTEG 179

Query: 112 LVNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGDQ 165
            V R+            P +IK   GG   G+ V++    +         ++ S      
Sbjct: 180 PVERYEEVKAFTDTYGFPIIIKAAFGGGGRGMRVVRDQAELRDSFERATSEARSAFGNGT 239

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDI 223
           + +E+++D    +   ++GD+  +V              ++        V PA  +P D+
Sbjct: 240 VFVERFLDKPKHIEVQLLGDSHGNVV-----HLFERDCSVQRRHQKVVEVAPAKDLPADV 294

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              +   A    +++  R    ++FL D  +R  +++EIN 
Sbjct: 295 RDRILADAVKLAKSVNYRNAGTAEFLVDQQNRH-YFIEINP 334


>gi|311068073|ref|YP_003972996.1| carbamoyl phosphate synthase large subunit [Bacillus atrophaeus
           1942]
 gi|310868590|gb|ADP32065.1| carbamoyl phosphate synthase large subunit [Bacillus atrophaeus
           1942]
          Length = 1071

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 49/297 (16%), Positives = 111/297 (37%), Gaps = 36/297 (12%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL++ G++V  +         D +              +  ++   +PD     L G  G
Sbjct: 36  ALKEEGYEVILVNSNPATIMTDTEMADRVYIEPLTPEFLTRIIRKERPDAILPTLGGQTG 95

Query: 64  EDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFT 117
            +  V    Q +L+   +    + + A   + D+   + +++    PV  S +++     
Sbjct: 96  LNLAVELSEQGVLQECGVEVLGTKLSAIQQAEDRDLFRTLMNDLNEPVPESDIIHSLEEA 155

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IE 176
            +    I  P +++P       G  +   +  +   +      +   Q L+E+ + G  E
Sbjct: 156 ENFVSKIGFPVIVRPAYTLGGTGGGICSNEIELKEIVENGLKLSPVHQCLLEKSIAGYKE 215

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAH 235
           +   VM D+      I V   +     +   + +S  V P++ +    Y+ ++ ++    
Sbjct: 216 IEYEVMRDSQDHA--IVVCNMENID-PVGIHTGDSIVVAPSQTLSDREYQLLRNVSLKLI 272

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +A+G  G        DP S + + +E+N  P ++  S     +   GY   +L   +
Sbjct: 273 RALGIEGGCNVQLALDPDSFQYYIIEVN--PRVSRSS--ALASKATGYPIAKLAAKI 325



 Score = 65.9 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 31/221 (14%), Positives = 78/221 (35%), Gaps = 13/221 (5%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--QHLISPPYVIKPL 133
            +    + +     + D+ + +Q + +  VP                   I  P +++P 
Sbjct: 650 GVKILGTSLEDLDRAEDRDKFEQALETLQVPQPLGKTATSVEQAVKIASDIGYPVLVRPS 709

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
                  + ++  ++ +   +  +   N    +LI++Y+ G E+    + D    V    
Sbjct: 710 YVLGGRAMEIVYHEEELLHYMKNAVKINPQHPVLIDRYLTGKEIEVDAVSDGETVVIPGI 769

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
           +   +           +S  V P + +  DI K++++      + +   G+    F+   
Sbjct: 770 MEHIERAGVHS----GDSIAVYPPQSLTGDIKKKIEQYTIALAKGLNIVGLLNIQFVLSK 825

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
              +V+ LE+N +   T     P ++   G     L   ++
Sbjct: 826 --GEVYVLEVNPRSSRT----VPFLSKITGIPMANLATKVI 860


>gi|317055114|ref|YP_004103581.1| putative carbamoyl-phosphate-synthetase [Ruminococcus albus 7]
 gi|315447383|gb|ADU20947.1| putative carbamoyl-phosphate-synthetase [Ruminococcus albus 7]
          Length = 400

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 33/232 (14%), Positives = 81/232 (34%), Gaps = 19/232 (8%)

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI----LVNRFTMDSQHLISPPY 128
           E + +P   S   +  +  +K + +  ++  G     +              + + + P 
Sbjct: 85  EKMGLP--GSPYRSVDILCNKDKFRAFLAENGFCTPKARGYEDTAPAEKDLKEGVFTFPV 142

Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD 188
           ++KP+    S G+  I   + I   L  + S++ G ++++E++V+         G +   
Sbjct: 143 IVKPVDSSGSKGVGRIDTAEEISEKLEYAMSFSRGHKIIVEEFVEKFGYQIAGDGLSIDG 202

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR-SD 247
                   +D +  + +   +  +   P  +P D+  ++          +     +   D
Sbjct: 203 KLVFRCFANDHFDPKCENPFVPVSASFPYNMPDDVQTKIHNEIQRLLTLLDMGTTTYNFD 262

Query: 248 FLFDPLSRKVFWLEI------NVQPGM----TPVSIFPEMAAYA-GYSFREL 288
              D     V+ +E+      N  P +    T V +       A G S  ++
Sbjct: 263 MRIDK-DYNVYLMEVAPRDGGNYIPDIIKYCTGVDLVECAVKAAMGMSLSDV 313


>gi|242238045|ref|YP_002986226.1| carbamoyl phosphate synthase large subunit [Dickeya dadantii
           Ech703]
 gi|242130102|gb|ACS84404.1| carbamoyl-phosphate synthase, large subunit [Dickeya dadantii
           Ech703]
          Length = 1074

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 96/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D +              V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +    Q +L    +    +   A   + D+ R    +   G+    S +
Sbjct: 89  TMGGQTALNCALELERQGVLAEFGVTMIGATADAIDKAEDRRRFDIAMKKIGLETARSGI 148

Query: 113 VNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     +     +  P +I+P       G  +    +       +    +  ++LLI++
Sbjct: 149 AHTMDEALAVAADVGYPCIIRPSFTMGGTGGGIAYNREEFEEICARGLDLSPTNELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + + +   ++   D           +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENLDAMGIHT----GDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RNASMAVLREIGVETGGSNVQFAVNPKTGRLIVIEMNP 302



 Score = 59.0 bits (142), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 30/197 (15%), Positives = 75/197 (38%), Gaps = 10/197 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYV 129
           LE   +P   +   A   + D+ R +Q V+   +    +  V+      +    I  P V
Sbjct: 654 LEAAGVPVIGTSPDAIDRAEDRERFQQAVNRLSLKQPANATVSTIDQAVEKAAAIGYPLV 713

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  +  +      + S ++   +L+++++ D +E+    + D    
Sbjct: 714 VRPSYVLGGRAMEIVYDEVDLRRYFQTAVSVSNDAPVLLDRFLDDAVEVDVDAICDGERV 773

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           +    +   +    +    S +S   LPA  +  +I   +++        +  RG+    
Sbjct: 774 LIGGIMEHIE----QAGVHSGDSACSLPAYTLSKEIQDVMRQQVEKLAFELSVRGLMNVQ 829

Query: 248 FLFDPLSRKVFWLEINV 264
           F       +V+ +E+N 
Sbjct: 830 FAV--KDNEVYLIEVNP 844


>gi|227828240|ref|YP_002830020.1| lysine biosynthesis enzyme LysX [Sulfolobus islandicus M.14.25]
 gi|229585468|ref|YP_002843970.1| lysine biosynthesis enzyme LysX [Sulfolobus islandicus M.16.27]
 gi|227460036|gb|ACP38722.1| lysine biosynthesis enzyme LysX [Sulfolobus islandicus M.14.25]
 gi|228020518|gb|ACP55925.1| lysine biosynthesis enzyme LysX [Sulfolobus islandicus M.16.27]
          Length = 283

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 53/254 (20%), Positives = 101/254 (39%), Gaps = 33/254 (12%)

Query: 27  EDAGFKVSQIDV-DRSVGLVLAHLKPDL-AF---NVLHGNFGEDGLVQAIL-ELLEIPYT 80
           +  G++V+ I   D  +     +++ D+  F   N+ H       L+ + L E L  P  
Sbjct: 22  KKLGYQVTTIYSKDFVLFSNEFNIENDVNLFIQRNISHNR----ALITSFLVEQLGYPVI 77

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGSS 138
            +  +      +K+ +  +++   +P   + +    T  M+    +  P VIKP++G  S
Sbjct: 78  -NDHMTLIRCENKIFTTYILAKHNIPTPKTFIAFDKTNAMEYSKKLGYPVVIKPVEG--S 134

Query: 139 LGIIVIKKDQSIP----LDLLQSSSWNHGDQLLIEQYV--DGIELTCGVMGDASLDVTEI 192
            G +V K D        L+  + S+  + D   I+++V     ++   V+GD +      
Sbjct: 135 WGRMVAKADNLDVLYSYLEYQEFSTQKYKDIYYIQEFVNKPNRDIRIFVIGDETP----- 189

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
                  Y +       N+     A  PL I +E++ LA      IG   +   D +F+ 
Sbjct: 190 ----VGIYRFNENNWRTNTALGAKAY-PLKIDEELKELALKVKDIIGGFFLG-ID-IFED 242

Query: 253 LSRKVFWLEINVQP 266
             R     E+N  P
Sbjct: 243 KDRGYLVDEVNGVP 256


>gi|120611184|ref|YP_970862.1| acetyl-CoA carboxylase, biotin carboxylase [Acidovorax citrulli
           AAC00-1]
 gi|120589648|gb|ABM33088.1| acetyl-CoA carboxylase, biotin carboxylase [Acidovorax citrulli
           AAC00-1]
          Length = 682

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 76/220 (34%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+       E   I +      + A   DK+ SK++ +   V   P    
Sbjct: 77  AIHPGYGFLSENEGFAQRCEDEGIAFIGPKAHSIAAMGDKIASKKLANEAKVNTIPGWND 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD--LLQSSSWNH--GDQ 165
            I      ++    I  P +IK   GG   G+ V   D+         Q+ + N    D+
Sbjct: 137 AIESADRAVEIARDIGYPVMIKASAGGGGKGLRVAYNDKEALEGFTACQNEARNSFGDDR 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE++V     +   V+GDA  +V  +   +        K             I     
Sbjct: 197 IFIEKFVQQPRHIEIQVLGDAHGNVIYLNERECSIQRRHQK----VIEEAPSPFISDATR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K +   A    +A+  +     +F      +  ++LE+N 
Sbjct: 253 KAMGEQAVALAKAVKYQSAGTVEF-VVGKDQDFYFLEMNT 291


>gi|85373966|ref|YP_458028.1| carbamoyl phosphate synthase large subunit [Erythrobacter litoralis
           HTCC2594]
 gi|84787049|gb|ABC63231.1| carbamoyl-phosphate synthase large subunit [Erythrobacter litoralis
           HTCC2594]
          Length = 1109

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 42/215 (19%), Positives = 88/215 (40%), Gaps = 14/215 (6%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-SILVNRFTMDS-QHLISPPYV 129
           LE   IP   +   A  L+ D+ R  ++V+   +      I  +R    +    I  P +
Sbjct: 690 LEDAGIPILGTSPDAIDLAEDRERFAKLVNKLKLKQPDNGIAYSRDEAAAVAARIGYPVL 749

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  +  +   +  + + +    +L++QY+ D IE    V+ D    
Sbjct: 750 LRPSYVLGGRAMEIVDSEAQLDDYIRTAVNVSGESPVLVDQYLRDAIECDVDVISDGE-- 807

Query: 189 VTEIAVPKSDFYSYELK-YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
             E+ +     +  E   +S  ++  + P  +P +I +E++R A     A+  RG+    
Sbjct: 808 --EVRIAGVMQHIEEAGVHSGDSACTLPPYSLPNEIIEEMERQAEALAIALKVRGLMNVQ 865

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAG 282
           F       +V+ +E+N +   T     P +A   G
Sbjct: 866 FAV--KDGEVYLIEVNPRASRT----VPFVAKAIG 894



 Score = 54.4 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 47/278 (16%), Positives = 96/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQID---------------------VDRSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++                     V   V  ++A  KPD    
Sbjct: 29  SGTQAIKALREEGYRVVLVNSNPATIMTDPEMADATYVEPIVPEIVAKIIAKEKPDALLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  ++     +L    +    +   A   + ++ R ++ + S G+    S +
Sbjct: 89  TMGGQTALNCALKLDEMGVLAEHGVEMIGAKADAIDKAENRQRFREAMDSIGLESARSGI 148

Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            N      +       P +I+P       G  +    Q     + +    +   ++LIE+
Sbjct: 149 ANTLEEAREVLKRTGLPSIIRPSFTLGGTGGGIAYNTQEFDRIVREGLDASPTTEVLIEE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPA-KIPLDIYKEV 227
            + G  E    V+ D   +   I   ++ D           +S  V PA  +    Y+ +
Sbjct: 209 SLLGWKEFEMEVVRDRKDNAIIICAIENVDPMGVHT----GDSITVAPALTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P   ++  +E+N 
Sbjct: 265 RTASINVLREIGVETGGSNVQFAVNPADGRLIVIEMNP 302


>gi|23336049|ref|ZP_00121278.1| COG0458: Carbamoylphosphate synthase large subunit (split gene in
           MJ) [Bifidobacterium longum DJO10A]
 gi|23464695|ref|NP_695298.1| hypothetical protein BL0068 [Bifidobacterium longum NCC2705]
 gi|189438948|ref|YP_001954029.1| carbamoylphosphate synthase large subunit [Bifidobacterium longum
           DJO10A]
 gi|81847373|sp|Q8G815|CARB_BIFLO RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|226700923|sp|B3DQ32|CARB_BIFLD RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|23325259|gb|AAN23934.1| CarB [Bifidobacterium longum NCC2705]
 gi|189427383|gb|ACD97531.1| Carbamoylphosphate synthase large subunit [Bifidobacterium longum
           DJO10A]
          Length = 1127

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 44/288 (15%), Positives = 103/288 (35%), Gaps = 36/288 (12%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQIDVDRS---------------------VGLV 45
           G ++E + S   G      L + G +V  ++ + +                     +  +
Sbjct: 21  GQAAEFDYS---GTQACRVLREEGIRVILVNSNPATIMTDPEMADATYIEPIATPILEQI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +A  +PD     L G    +  +      +L+   +    + + A     D+   K+VV 
Sbjct: 78  IAKERPDALLPTLGGQTALNAAMALGEAGVLKKYNVELIGASLEAIDRGEDRELFKKVVD 137

Query: 102 SCGVPVCPSILVNRFTMDS--QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G     S + +              P V++P      LG  +   ++ +         
Sbjct: 138 EAGAESARSDIAHSIEEVDKIAEKFGYPLVVRPSFTMGGLGSGIAHNEEELHRIAGAGIH 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
           ++  D++LIE+ ++G  E    +M D + +V  +   ++      +   + +S  V P  
Sbjct: 198 YSPTDEVLIEEGIEGWKEFELELMRDRNDNVVVVCPIENVD---PVGVHTGDSITVAPCF 254

Query: 219 -IPLDIYKEVQRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
            +    Y++++ +     + +G   G     F   P + ++  +E+N 
Sbjct: 255 TLTDREYQKLRDIGIAIIRGVGVDTGGCNIQFAVHPDTGRIIVIEMNP 302



 Score = 51.7 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/233 (13%), Positives = 76/233 (32%), Gaps = 29/233 (12%)

Query: 67  LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTMDSQHLI 124
            + A L+   +P   +   +  L+ ++    +V+    +        L      ++ H I
Sbjct: 651 SLAARLKAAGVPILGTTPESIDLAENRELFGEVLKKAEMNAPRYGTALSLEEAKEAAHRI 710

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
             P +++P       G+ ++  D+ +   + ++ +    D +     V G   +  ++  
Sbjct: 711 GYPVLVRPSYVLGGRGMEIVYDDKQLNKYVDRALAEAKADTV-----VSGRLPSPLLIDK 765

Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK--------------IPLDIYKEVQRL 230
              D  EI V     +  E  Y      HV  A               +  D  + ++  
Sbjct: 766 FLQDAIEIDV--DALFDGEELYIGGIMEHVEEAGVHSGDAACTLPPSTLSDDQIRRLREG 823

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283
            +   +    +G+    + F      ++ +E N +   T     P  +   G 
Sbjct: 824 TYAIAKGCHVQGLINVQYAFMA--NTLYVIEANPRASRT----VPFASKATGV 870


>gi|312132389|ref|YP_003999728.1| carb [Bifidobacterium longum subsp. longum BBMN68]
 gi|311772601|gb|ADQ02089.1| CarB [Bifidobacterium longum subsp. longum BBMN68]
          Length = 1127

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 44/288 (15%), Positives = 103/288 (35%), Gaps = 36/288 (12%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQIDVDRS---------------------VGLV 45
           G ++E + S   G      L + G +V  ++ + +                     +  +
Sbjct: 21  GQAAEFDYS---GTQACRVLREEGIRVILVNSNPATIMTDPEMADATYIEPIATPILEQI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +A  +PD     L G    +  +      +L+   +    + + A     D+   K+VV 
Sbjct: 78  IAKERPDALLPTLGGQTALNAAMALGEAGVLKKYNVELIGASLEAIDRGEDRELFKKVVD 137

Query: 102 SCGVPVCPSILVNRFTMDS--QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G     S + +              P V++P      LG  +   ++ +         
Sbjct: 138 EAGAESARSDIAHSIEEVDKIAEKFGYPLVVRPSFTMGGLGSGIAHNEEELHRIAGAGIH 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
           ++  D++LIE+ ++G  E    +M D + +V  +   ++      +   + +S  V P  
Sbjct: 198 YSPTDEVLIEEGIEGWKEFELELMRDRNDNVVVVCPIENVD---PVGVHTGDSITVAPCF 254

Query: 219 -IPLDIYKEVQRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
            +    Y++++ +     + +G   G     F   P + ++  +E+N 
Sbjct: 255 TLTDREYQKLRDIGIAIIRGVGVDTGGCNIQFAVHPDTGRIIVIEMNP 302



 Score = 52.8 bits (126), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 32/233 (13%), Positives = 76/233 (32%), Gaps = 29/233 (12%)

Query: 67  LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTMDSQHLI 124
            + A L+   +P   +   +  L+ ++    +V+    +        L      ++ H I
Sbjct: 651 SLAARLKAAGVPILGTTPESIDLAENRELFGEVLKKAEMNAPRYGTALSLEEAKEAAHRI 710

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
             P +++P       G+ ++  D+ +   + ++ +    D +     V G   +  ++  
Sbjct: 711 GYPVLVRPSYVLGGRGMEIVYDDKQLNKYVDRALAEAKADTV-----VSGRLPSPLLIDK 765

Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK--------------IPLDIYKEVQRL 230
              D  EI V     +  E  Y      HV  A               +  D  + ++  
Sbjct: 766 FLQDAIEIDV--DALFDGEELYIGGIMEHVEEAGVHSGDAACTLPPSTLSDDQIRRLREG 823

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283
            +   +    +G+    + F      ++ +E N +   T     P  +   G 
Sbjct: 824 TYAIAKGCHVQGLINVQYAFMA--NTLYVIEANPRASRT----VPFASKATGM 870


>gi|291297659|ref|YP_003508937.1| carbamoyl-phosphate synthase L chain ATP- binding protein
           [Stackebrandtia nassauensis DSM 44728]
 gi|290566879|gb|ADD39844.1| Carbamoyl-phosphate synthase L chain ATP- binding protein
           [Stackebrandtia nassauensis DSM 44728]
          Length = 443

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 36/199 (18%), Positives = 75/199 (37%), Gaps = 13/199 (6%)

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVI 130
             I +      A     DK+ ++ ++S+  VPV P     +      +     I  P ++
Sbjct: 98  AGIAWIGPSPEAIDAMGDKVNARNLMSANDVPVAPGGGDPVTDATAALAVAESIGFPVMV 157

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG----DQLLIEQ-YVDGIELTCGVMGDA 185
           K   GG  +G+ + +  +++     +   +         LLIE+ +     +   ++G  
Sbjct: 158 KAAAGGGGMGMAIAEDAKALEEQAEKIHGFATRLFGSGDLLIERYFPRVRHIEVQILG-- 215

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
            L    +        S + ++  L      PA +       +   +  A +A+   G   
Sbjct: 216 -LPDGRVLALGERECSVQRRHQKLVEETPSPA-LTDATRARLLEASSRAGEAVNYVGAGT 273

Query: 246 SDFLFDPLSRKVFWLEINV 264
            ++LFD  S + F+LE+N 
Sbjct: 274 VEYLFDVDSGEFFFLEMNT 292


>gi|228960104|ref|ZP_04121768.1| Carbamoyl-phosphate synthase large chain [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|229047571|ref|ZP_04193161.1| Carbamoyl-phosphate synthase large chain [Bacillus cereus AH676]
 gi|229111356|ref|ZP_04240909.1| Carbamoyl-phosphate synthase large chain [Bacillus cereus Rock1-15]
 gi|229129164|ref|ZP_04258137.1| Carbamoyl-phosphate synthase large chain [Bacillus cereus
           BDRD-Cer4]
 gi|229146458|ref|ZP_04274829.1| Carbamoyl-phosphate synthase large chain [Bacillus cereus
           BDRD-ST24]
 gi|228637091|gb|EEK93550.1| Carbamoyl-phosphate synthase large chain [Bacillus cereus
           BDRD-ST24]
 gi|228654401|gb|EEL10266.1| Carbamoyl-phosphate synthase large chain [Bacillus cereus
           BDRD-Cer4]
 gi|228672132|gb|EEL27423.1| Carbamoyl-phosphate synthase large chain [Bacillus cereus Rock1-15]
 gi|228723818|gb|EEL75173.1| Carbamoyl-phosphate synthase large chain [Bacillus cereus AH676]
 gi|228799620|gb|EEM46573.1| Carbamoyl-phosphate synthase large chain [Bacillus thuringiensis
           serovar pakistani str. T13001]
          Length = 1018

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 41/260 (15%), Positives = 96/260 (36%), Gaps = 13/260 (5%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMR 95
             V  ++   +PD     L G  G +  V+     +L+   +    + + A   + D+  
Sbjct: 18  EFVSRIIRKERPDAILPTLGGQTGLNMAVELAKSGVLDECGVEILGTKLSAIEQAEDRDL 77

Query: 96  SKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153
            + ++     P  PS +++         + I  P +++P       G  +   ++ +   
Sbjct: 78  FRTLMQDLNEPTPPSEIIHNLDEAYGFVNEIGYPVIVRPAFTLGGTGGGICHNEEELIEI 137

Query: 154 LLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212
           +      +   Q L+E+ + G  E+   VM D++ +   I V   +       ++  +  
Sbjct: 138 VTSGLKHSPVTQCLLEKSIAGCKEIEYEVMRDSNDNA--IVVCNMENIDPVGVHTGDSIV 195

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
                 +    Y+ ++  +    +A+G  G        DP S + + +E+N  P ++  S
Sbjct: 196 VAPSQTLSDREYQMLRNTSLRIIRALGIEGGCNVQLALDPYSFQYYVIEVN--PRVSRSS 253

Query: 273 IFPEMAAYAGYSFRELLLWM 292
                +   GY   +L   +
Sbjct: 254 --ALASKATGYPIAKLAAKI 271



 Score = 65.5 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 37/283 (13%), Positives = 100/283 (35%), Gaps = 39/283 (13%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ------ 69
           A+++AG++   I         D   S  L    L  +   +++     E  +VQ      
Sbjct: 526 AIKEAGYEAIIINNNPETVSTDFSISDKLYFEPLTIEDVMHIIDLEKPEGVIVQFGGQTA 585

Query: 70  ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHL 123
               A LE   +    + +     + D+ + +  ++  G+P             +     
Sbjct: 586 INLAAKLEEHGVKILGTSLEDLDRAEDRDKFEAALTKLGIPQPVGKTATTVEQAVAIAEE 645

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + ++ + + +   +  +   +    +LI++Y+ G E+    + 
Sbjct: 646 IGYPVLVRPSYVLGGRAMEIVYRQEELLHYMKNAVKVHADHPVLIDRYMVGKEIEVDAIS 705

Query: 184 DAS---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIG 239
           D     +      + ++  +S        +S  V P + +   + +++        + + 
Sbjct: 706 DGENVFIPGIMEHIERAGVHS-------GDSIGVYPPQSLSEKLKEQIIEHTIALGKGLN 758

Query: 240 CRGISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277
             G+    F+      +V+ +E+N       P ++ ++  P  
Sbjct: 759 IVGLLNIQFVVFK--DQVYVIEVNPRASRTVPFLSKITGVPMA 799


>gi|229192056|ref|ZP_04319025.1| Carbamoyl-phosphate synthase large chain [Bacillus cereus ATCC
           10876]
 gi|228591382|gb|EEK49232.1| Carbamoyl-phosphate synthase large chain [Bacillus cereus ATCC
           10876]
          Length = 1018

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 41/260 (15%), Positives = 96/260 (36%), Gaps = 13/260 (5%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMR 95
             V  ++   +PD     L G  G +  V+     +L+   +    + + A   + D+  
Sbjct: 18  EFVSRIIRKERPDAILPTLGGQTGLNMAVELAKSGVLDECGVEILGTKLSAIEQAEDRDL 77

Query: 96  SKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153
            + ++     P  PS +++         + I  P +++P       G  +   ++ +   
Sbjct: 78  FRTLMQDLNEPTPPSEIIHNLDEAYGFVNEIGYPVIVRPAFTLGGTGGGICHNEEELIEI 137

Query: 154 LLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212
           +      +   Q L+E+ + G  E+   VM D++ +   I V   +       ++  +  
Sbjct: 138 VTSGLKHSPVTQCLLEKSIAGCKEIEYEVMRDSNDNA--IVVCNMENIDPVGVHTGDSIV 195

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
                 +    Y+ ++  +    +A+G  G        DP S + + +E+N  P ++  S
Sbjct: 196 VAPSQTLSDREYQMLRNTSLRIIRALGIEGGCNVQLALDPYSFQYYVIEVN--PRVSRSS 253

Query: 273 IFPEMAAYAGYSFRELLLWM 292
                +   GY   +L   +
Sbjct: 254 --ALASKATGYPIAKLAAKI 271



 Score = 66.3 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 26/221 (11%), Positives = 80/221 (36%), Gaps = 20/221 (9%)

Query: 68  VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLIS 125
           + A LE   +    + +     + D+ + +  ++  G+P             +     I 
Sbjct: 588 LAAKLEAHGVKILGTSLEDLDRAEDRDKFEAALTQLGIPQPVGKTATTVEQAVAIADKIG 647

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            P +++P        + ++ + + +   +  +   +    +LI++Y+ G E+    + D 
Sbjct: 648 YPVLVRPSYVLGGRAMEIVYRQEELLHYMKNAVKVHADHPVLIDRYMVGKEIEVDAISDG 707

Query: 186 S---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCR 241
               +      + ++  +S        +S  V P + +   + +++        + +   
Sbjct: 708 ENVFIPGIMEHIERAGVHS-------GDSIGVYPPQSLSAKLKEQIIEHTIALGKGLNIV 760

Query: 242 GISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277
           G+    F+      +V+ +E+N       P ++ ++  P  
Sbjct: 761 GLLNIQFVVFK--DEVYVIEVNPRASRTVPFLSKITGVPMA 799


>gi|1872144|emb|CAA72256.1| carbamoyl-phosphate synthase (glutamine-hydrolysing) large subunit
           [Thermus thermophilus HB27]
          Length = 1028

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 56/293 (19%), Positives = 101/293 (34%), Gaps = 46/293 (15%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI---------DVD------------RSVGLV 45
           G ++E + S   G     AL  AG++V  +         D +              +  +
Sbjct: 21  GQAAEFDYS---GTQAVKALRGAGYRVVLVNSNPATIMTDPELAERTYIEPLDLEHLEGI 77

Query: 46  LAHLKPDLAFNVLHGNFG--------EDGLVQAILELLEIPYTHSGILASALSMDKMRSK 97
           LA   PD     L G  G        E+G++Q       +    +   A     D+   +
Sbjct: 78  LAREAPDALLPTLGGQTGLNLAMALYEEGILQKY----GVELIGAKAEAIRKGEDREAFQ 133

Query: 98  QVVSSCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
           + +    + V    LV      +     +  P V++P       G  +   +  +   L 
Sbjct: 134 EAMRRIDLEVPRGQLVGSVEEGLHFAREVGFPVVVRPSFTLGGTGGGIAHDEAELVEVLS 193

Query: 156 QSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEI-AVPKSDFYSYELKYSSLNSTH 213
           +  + +     L+E+ V G  E    VM D +  V  I ++   D           +S  
Sbjct: 194 RGLTLSPVHTALVEESVLGWKEFELEVMRDHADTVVIITSIENVDPMGVHT----GDSIT 249

Query: 214 VLPAK-IPLDIYKEVQRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           V PA+ +    Y+ ++  A    + IG   G S   F  DP + +   +E+N 
Sbjct: 250 VAPAQTLSDVEYQRMRDAAKAIIREIGVETGGSNIQFAVDPKTGRQVVIEMNP 302



 Score = 65.1 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 45/289 (15%), Positives = 106/289 (36%), Gaps = 36/289 (12%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVL-HGNFGEDGLVQAI--- 71
           AL++AGF+   +         D D +  L +  L  +   N++ H      G++  +   
Sbjct: 583 ALKEAGFETIMVNSNPETVSTDYDTADRLYVEPLTLEDVLNIVEHQKP--IGVIATLGGQ 640

Query: 72  --------LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTMDSQ 121
                   LE   +    +   A   + D+     +    G+P     +       +   
Sbjct: 641 TPLKLAKGLEEAGVRLLGTPFSAIHQAEDREAFHALCQRLGIPQPEGRVAQSPEEALRLA 700

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-WNHGDQLLIEQYVDG-IELTC 179
             +  P +++P        + V++ +  +   L +  +       +L++++++G IEL  
Sbjct: 701 PEVGFPLLVRPSYVLGGRAMQVVRDEGELKRYLEEVYAPLEERPSILLDRFLEGAIELDV 760

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
             + D    +    +   +       +S  ++T + P  +P +  K+V+         +G
Sbjct: 761 DALSDGQEVMVAGIMEHVERAGV---HSGDSATLLPPVHVPEEALKKVRDYTRRLALTLG 817

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
            RG+   +  +  +  +V+ LE N +   T     P ++   G    +L
Sbjct: 818 VRGL--LNVQYAVVGEEVYVLEANPRASRT----VPFVSKAIGVPLAKL 860


>gi|85373814|ref|YP_457876.1| hypothetical protein ELI_04935 [Erythrobacter litoralis HTCC2594]
 gi|84786897|gb|ABC63079.1| hypothetical protein ELI_04935 [Erythrobacter litoralis HTCC2594]
          Length = 678

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 35/223 (15%), Positives = 75/223 (33%), Gaps = 19/223 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H  +G   E       LE   I +      A A   DK+ SK++    GV V P  + 
Sbjct: 77  AIHPGYGFLSERASFVEALEKEGITFIGPPANAIAAMGDKIESKKLAKKAGVNVVPGFVG 136

Query: 113 ---VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
                   ++  + I  P ++K   GG   G+ +   ++ +      +          D+
Sbjct: 137 EIKDTDHAVEISNDIGYPVMMKASAGGGGKGMRLAYSEKDVREGFEATKREGLNSFGDDR 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+++ D   +   ++GD   ++  +   +        K             +   + 
Sbjct: 197 VFIEKFIEDPRHIEIQILGDKHGNILYLNERECSIQRRHQK----VVEEAPSPFVTPKMR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLF---DPLSRKVFWLEINV 264
           K +        +A+        + +    D      ++LE+N 
Sbjct: 253 KAMGEQCVALSRAVDYHSAGTVELIVSGADETGESFYFLEMNT 295


>gi|116619615|ref|YP_821771.1| ATP-dependent carboxylate-amine ligase domain-containing protein
           [Candidatus Solibacter usitatus Ellin6076]
 gi|116222777|gb|ABJ81486.1| ATP-dependent carboxylate-amine ligase domain protein, ATP-grasp
           [Candidatus Solibacter usitatus Ellin6076]
          Length = 428

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 40/226 (17%), Positives = 85/226 (37%), Gaps = 27/226 (11%)

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI--LVNRFTMDSQHLISPPYVIK 131
           +  +P+      A+   +DK  ++Q+  + G+ V       +     +       P V+K
Sbjct: 111 MFGVPF--HPAAAARACLDKNLARQLFQAAGLRVPAFFRASLADNPEELAARAPYPCVLK 168

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC-GVMGDASLDVT 190
           PL   +S G+I             + +      +L +E Y+ G E    GVM    L   
Sbjct: 169 PLGLSASRGVIRADDPGGFVAAFRRIAKMG-ERELQVESYIPGREFAVEGVMTGGKLQTI 227

Query: 191 EI----AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR-GISR 245
            I       +  F+          + +V P++    + + +   A  A  A+G + G   
Sbjct: 228 AIFDKPDPLEGPFF--------EETIYVTPSREAEHVQQALIDTARRAAGALGLQHGPVH 279

Query: 246 SDFLFDPLSRKVFWLEINVQP--GMTPVSIFPEMAAYAGYSFRELL 289
           ++  ++      + LE++ +P  G+   ++   +A   G    E++
Sbjct: 280 AELRYNSEGA--WILEVHGRPIGGLCARAL--RLAD--GIPLEEMI 319


>gi|195997897|ref|XP_002108817.1| hypothetical protein TRIADDRAFT_49717 [Trichoplax adhaerens]
 gi|190589593|gb|EDV29615.1| hypothetical protein TRIADDRAFT_49717 [Trichoplax adhaerens]
          Length = 693

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 41/221 (18%), Positives = 75/221 (33%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      L+   + +      A     DK+ SK +  +  V   P    
Sbjct: 104 AVHPGYGFLSENREFAKALKDNGVTFIGPPAKAIEAMGDKIESKLLAKNAKVNTIPGFDG 163

Query: 112 LVNRFTMDS--QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGD 164
           +V          + I  P +IK   GG   G+ +   D+             +SS+   D
Sbjct: 164 VVKDADEAVKIANDIGYPVMIKASAGGGGKGMRIAWNDEEAREGFRFSSQEAASSFG-DD 222

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           +LLIE+++D    +   V+ D   +   +   +        K             +  + 
Sbjct: 223 RLLIEKFIDNPRHIELQVLLDQHGNGVFLNERECSIQRRNQK----VIEEAPSTFLNPET 278

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              +   A     A+G       +FL D   R  ++LE+N 
Sbjct: 279 RAAMGEQALALASAVGYFSAGTVEFLVDSK-RNFYFLEMNT 318


>gi|228922639|ref|ZP_04085939.1| Carbamoyl-phosphate synthase large chain [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228837068|gb|EEM82409.1| Carbamoyl-phosphate synthase large chain [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
          Length = 1018

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 41/260 (15%), Positives = 96/260 (36%), Gaps = 13/260 (5%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMR 95
             V  ++   +PD     L G  G +  V+     +L+   +    + + A   + D+  
Sbjct: 18  EFVSRIIRKERPDAILPTLGGQTGLNMAVELAKSGVLDECGVEILGTKLSAIEQAEDRDL 77

Query: 96  SKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153
            + ++     P  PS +++         + I  P +++P       G  +   ++ +   
Sbjct: 78  FRTLMQDLNEPTPPSEIIHNLDEAYGFVNEIGYPVIVRPAFTLGGTGGGICHNEEELIEI 137

Query: 154 LLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212
           +      +   Q L+E+ + G  E+   VM D++ +   I V   +       ++  +  
Sbjct: 138 VTSGLKHSPVTQCLLEKSIAGCKEIEYEVMRDSNDNA--IVVCNMENIDPVGVHTGDSIV 195

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
                 +    Y+ ++  +    +A+G  G        DP S + + +E+N  P ++  S
Sbjct: 196 VAPSQTLSDREYQMLRNTSLRIIRALGIEGGCNVQLALDPYSFQYYVIEVN--PRVSRSS 253

Query: 273 IFPEMAAYAGYSFRELLLWM 292
                +   GY   +L   +
Sbjct: 254 --ALASKATGYPIAKLAAKI 271



 Score = 64.4 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 37/283 (13%), Positives = 100/283 (35%), Gaps = 39/283 (13%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ------ 69
           A+++AG++   I         D   S  L    L  +   +++     E  +VQ      
Sbjct: 526 AIKEAGYEAIIINNNPETVSTDFSISDKLYFEPLTIEDVMHIIDLEKPEGVIVQFGGQTA 585

Query: 70  ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHL 123
               A LE   +    + +     + D+ + +  ++  G+P             +     
Sbjct: 586 INLAAKLEEHGVKILGTSLEDLDRAEDRDKFEAALTQLGIPQPVGKTATTVEQAVAIAEE 645

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + ++ + + +   +  +   +    +LI++Y+ G E+    + 
Sbjct: 646 IGYPVLVRPSYVLGGRAMEIVYRQEELLHYMKNAVKVHAEHPVLIDRYMVGKEIEVDAIS 705

Query: 184 DAS---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIG 239
           D     +      + ++  +S        +S  V P + +   + +++        + + 
Sbjct: 706 DGENVFIPGIMEHIERAGVHS-------GDSIGVYPPQSLSEKLKEQIIEHTIALGKGLN 758

Query: 240 CRGISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277
             G+    F+      +V+ +E+N       P ++ ++  P  
Sbjct: 759 IVGLLNIQFVVFK--DQVYVIEVNPRASRTVPFLSKITGVPMA 799


>gi|228954163|ref|ZP_04116191.1| Carbamoyl-phosphate synthase large chain [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228805483|gb|EEM52074.1| Carbamoyl-phosphate synthase large chain [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
          Length = 1018

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 41/260 (15%), Positives = 96/260 (36%), Gaps = 13/260 (5%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMR 95
             V  ++   +PD     L G  G +  V+     +L+   +    + + A   + D+  
Sbjct: 18  EFVSRIIRKERPDAILPTLGGQTGLNMAVELAKSGVLDECGVEILGTKLSAIEQAEDRDL 77

Query: 96  SKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153
            + ++     P  PS +++         + I  P +++P       G  +   ++ +   
Sbjct: 78  FRTLMQDLNEPTPPSEIIHNLDEAYGFVNEIGYPVIVRPAFTLGGTGGGICHNEEELIEI 137

Query: 154 LLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212
           +      +   Q L+E+ + G  E+   VM D++ +   I V   +       ++  +  
Sbjct: 138 VTSGLKHSPVTQCLLEKSIAGCKEIEYEVMRDSNDNA--IVVCNMENIDPVGVHTGDSIV 195

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
                 +    Y+ ++  +    +A+G  G        DP S + + +E+N  P ++  S
Sbjct: 196 VAPSQTLSDREYQMLRNTSLRIIRALGIEGGCNVQLALDPYSFQYYVIEVN--PRVSRSS 253

Query: 273 IFPEMAAYAGYSFRELLLWM 292
                +   GY   +L   +
Sbjct: 254 --ALASKATGYPIAKLAAKI 271



 Score = 65.5 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 37/283 (13%), Positives = 100/283 (35%), Gaps = 39/283 (13%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ------ 69
           A+++AG++   I         D   S  L    L  +   +++     E  +VQ      
Sbjct: 526 AIKEAGYEAIIINNNPETVSTDFSISDKLYFEPLTIEDVMHIIDLEKPEGVIVQFGGQTA 585

Query: 70  ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHL 123
               A LE   +    + +     + D+ + +  ++  G+P             +     
Sbjct: 586 INLAAKLEEHGVKILGTSLEDLDRAEDRDKFEAALTKLGIPQPVGKTATTVEQAVAIAEE 645

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + ++ + + +   +  +   +    +LI++Y+ G E+    + 
Sbjct: 646 IGYPVLVRPSYVLGGRAMEIVYRQEELLHYMKNAVKVHADHPVLIDRYMVGKEIEVDAIS 705

Query: 184 DAS---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIG 239
           D     +      + ++  +S        +S  V P + +   + +++        + + 
Sbjct: 706 DGENVFIPGIMEHIERAGVHS-------GDSIGVYPPQSLSEKLKEQIIEHTIALGKGLN 758

Query: 240 CRGISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277
             G+    F+      +V+ +E+N       P ++ ++  P  
Sbjct: 759 IVGLLNIQFVVFK--DQVYVIEVNPRASRTVPFLSKITGVPMA 799


>gi|229071386|ref|ZP_04204608.1| Carbamoyl-phosphate synthase large chain [Bacillus cereus F65185]
 gi|228711677|gb|EEL63630.1| Carbamoyl-phosphate synthase large chain [Bacillus cereus F65185]
          Length = 1018

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 41/260 (15%), Positives = 96/260 (36%), Gaps = 13/260 (5%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMR 95
             V  ++   +PD     L G  G +  V+     +L+   +    + + A   + D+  
Sbjct: 18  EFVSRIIRKERPDAILPTLGGQTGLNMAVELAKSGVLDECGVEILGTKLSAIEQAEDRDL 77

Query: 96  SKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153
            + ++     P  PS +++         + I  P +++P       G  +   ++ +   
Sbjct: 78  FRTLMQDLNEPTPPSEIIHNLDEAYGFVNEIGYPVIVRPAFTLGGTGGGICHNEEELIEI 137

Query: 154 LLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212
           +      +   Q L+E+ + G  E+   VM D++ +   I V   +       ++  +  
Sbjct: 138 VTSGLKHSPVTQCLLEKSIAGCKEIEYEVMRDSNDNA--IVVCNMENIDPVGVHTGDSIV 195

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
                 +    Y+ ++  +    +A+G  G        DP S + + +E+N  P ++  S
Sbjct: 196 VAPSQTLSDREYQMLRNTSLRIIRALGIEGGCNVQLALDPYSFQYYVIEVN--PRVSRSS 253

Query: 273 IFPEMAAYAGYSFRELLLWM 292
                +   GY   +L   +
Sbjct: 254 --ALASKATGYPIAKLAAKI 271



 Score = 65.5 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 37/283 (13%), Positives = 100/283 (35%), Gaps = 39/283 (13%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ------ 69
           A+++AG++   I         D   S  L    L  +   +++     E  +VQ      
Sbjct: 526 AIKEAGYEAIIINNNPETVSTDFSISDKLYFEPLTIEDVMHIIDLEKPEGVIVQFGGQTA 585

Query: 70  ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHL 123
               A LE   +    + +     + D+ + +  ++  G+P             +     
Sbjct: 586 INLAAKLEEHGVKILGTSLEDLDRAEDRDKFEAALTKLGIPQPVGKTATTVEQAVAIAEE 645

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + ++ + + +   +  +   +    +LI++Y+ G E+    + 
Sbjct: 646 IGYPVLVRPSYVLGGRAMEIVYRQEELLHYMKNAVKVHADHPVLIDRYMVGKEIEVDAIS 705

Query: 184 DAS---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIG 239
           D     +      + ++  +S        +S  V P + +   + +++        + + 
Sbjct: 706 DGENVFIPGIMEHIERAGVHS-------GDSIGVYPPQSLSEKLKEQIIEHTIALGKGLN 758

Query: 240 CRGISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277
             G+    F+      +V+ +E+N       P ++ ++  P  
Sbjct: 759 IVGLLNIQFVVFK--DQVYVIEVNPRASRTVPFLSKITGVPMA 799


>gi|229081139|ref|ZP_04213649.1| Carbamoyl-phosphate synthase large chain [Bacillus cereus Rock4-2]
 gi|229152084|ref|ZP_04280279.1| Carbamoyl-phosphate synthase large chain [Bacillus cereus m1550]
 gi|228631433|gb|EEK88067.1| Carbamoyl-phosphate synthase large chain [Bacillus cereus m1550]
 gi|228702183|gb|EEL54659.1| Carbamoyl-phosphate synthase large chain [Bacillus cereus Rock4-2]
          Length = 1018

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 41/260 (15%), Positives = 96/260 (36%), Gaps = 13/260 (5%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMR 95
             V  ++   +PD     L G  G +  V+     +L+   +    + + A   + D+  
Sbjct: 18  EFVSRIIRKERPDAILPTLGGQTGLNMAVELAKSGVLDECGVEILGTKLSAIEQAEDRDL 77

Query: 96  SKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153
            + ++     P  PS +++         + I  P +++P       G  +   ++ +   
Sbjct: 78  FRTLMQDLNEPTPPSEIIHNLDEAYGFVNEIGYPVIVRPAFTLGGTGGGICHNEEELIEI 137

Query: 154 LLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212
           +      +   Q L+E+ + G  E+   VM D++ +   I V   +       ++  +  
Sbjct: 138 VTSGLKHSPVTQCLLEKSIAGCKEIEYEVMRDSNDNA--IVVCNMENIDPVGVHTGDSIV 195

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
                 +    Y+ ++  +    +A+G  G        DP S + + +E+N  P ++  S
Sbjct: 196 VAPSQTLSDREYQMLRNTSLRIIRALGIEGGCNVQLALDPYSFQYYVIEVN--PRVSRSS 253

Query: 273 IFPEMAAYAGYSFRELLLWM 292
                +   GY   +L   +
Sbjct: 254 --ALASKATGYPIAKLAAKI 271



 Score = 65.5 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 37/283 (13%), Positives = 100/283 (35%), Gaps = 39/283 (13%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ------ 69
           A+++AG++   I         D   S  L    L  +   +++     E  +VQ      
Sbjct: 526 AIKEAGYEAIIINNNPETVSTDFSISDKLYFEPLTIEDVMHIIDLEKPEGVIVQFGGQTA 585

Query: 70  ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHL 123
               A LE   +    + +     + D+ + +  ++  G+P             +     
Sbjct: 586 INLAAKLEEHGVKILGTSLEDLDRAEDRDKFEAALTKLGIPQPVGKTATTVEQAVAIAEE 645

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + ++ + + +   +  +   +    +LI++Y+ G E+    + 
Sbjct: 646 IGYPVLVRPSYVLGGRAMEIVYRQEELLHYMKNAVKVHADHPVLIDRYMVGKEIEVDAIS 705

Query: 184 DAS---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIG 239
           D     +      + ++  +S        +S  V P + +   + +++        + + 
Sbjct: 706 DGENVFIPGIMEHIERAGVHS-------GDSIGVYPPQSLSEKLKEQIIEHTIALGKGLN 758

Query: 240 CRGISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277
             G+    F+      +V+ +E+N       P ++ ++  P  
Sbjct: 759 IVGLLNIQFVVFK--DQVYVIEVNPRASRTVPFLSKITGVPMA 799


>gi|331084350|ref|ZP_08333454.1| carbamoyl-phosphate synthase large subunit [Lachnospiraceae
           bacterium 6_1_63FAA]
 gi|330401614|gb|EGG81195.1| carbamoyl-phosphate synthase large subunit [Lachnospiraceae
           bacterium 6_1_63FAA]
          Length = 1065

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 32/229 (13%), Positives = 82/229 (35%), Gaps = 24/229 (10%)

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYVIKP 132
           + +    +       + D+     ++  C +P      V        + + +  P +++P
Sbjct: 650 MGVKILGTSAENVDAAEDRELFDGILEECHIPRPKGHTVYTAEEAKKAANELGYPVLVRP 709

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS---LDV 189
                  G+ +   D+ +   +   +       +L+++Y+ G E+    + D     +  
Sbjct: 710 SYVLGGQGMQIAINDEDVEEYIGIINRIAQEHPILVDKYLQGKEIEVDAVCDGENILIPG 769

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               + ++  +S        +S  V PA+ I     K ++       +++   G+    F
Sbjct: 770 IMEHIERAGIHS-------GDSISVYPARTISETAKKTIEEYTRRLAKSLHVLGMINIQF 822

Query: 249 LFDPLSRKVFWLEIN-----VQPGM---TPVSIFPEMAAYA-GYSFREL 288
           +      +V+ +E+N       P +   T + I P  A    G+  ++L
Sbjct: 823 IV--CGEEVYVIEVNPRSSRTVPYISKVTGIPIVPLAAKVILGHKLKDL 869



 Score = 61.3 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 43/286 (15%), Positives = 101/286 (35%), Gaps = 33/286 (11%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQID-------VDRSVG--------------LV 45
           G ++E + +   G     +L++ G +V  ++        D+ +                +
Sbjct: 21  GQAAEFDYA---GTQACRSLKEEGIEVVLLNSNPATIMTDKDIADKVYIEPLTVEVVEQL 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   KPD     L G  G +  +    +  L+   +    +       + D+   K  + 
Sbjct: 78  ILKEKPDSVLPTLGGQAGLNLAMELEERGFLKEHNVRLIGTTSETIKKAEDRQEFKDTME 137

Query: 102 SCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G P+  S++V      +   + I  P V++P       G  +   ++ +   L     
Sbjct: 138 KIGEPIAASLVVKNVEDGIAFSNKIGYPVVLRPAYTLGGSGGGIANNEEELVEILENGLR 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   ++L+E+ + G  E+   VM D++ +   I V   +       ++  +        
Sbjct: 198 LSRVGEVLVERCIAGWKEIEYEVMRDSAGN--CITVCNMENLDPVGVHTGDSIVVAPSQT 255

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +    Y+ ++  A      +G  G     +  +P S +   +E+N 
Sbjct: 256 LGDKEYQMLRTSALNIITELGITGGCNVQYALNPNSFEYCVIEVNP 301


>gi|325694685|gb|EGD36592.1| carbamoyl-phosphate synthase, large subunit [Streptococcus
           sanguinis SK150]
          Length = 1059

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 22/224 (9%), Positives = 71/224 (31%), Gaps = 11/224 (4%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYV 129
           L    +    + +     + D+   +Q +    +   P           ++   I  P +
Sbjct: 646 LSKAGVKILGTQVADLDRAEDRDLFEQALKELDIQQPPGQTATNEEEAVEAARKIGFPVL 705

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           ++P        + +++ +  +   +  +   +    +L++ Y+ G E     + D    +
Sbjct: 706 VRPSYVLGGRAMEIVENEADLRSYMRTAVKASPDHPVLVDSYIVGDECEVDAISDGRQVL 765

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
               +   +       +S  +     P  +   +   +          + C G+    F+
Sbjct: 766 IPGIMEHIERAGV---HSGDSMAAYPPQTLSQKVKDTIADYTKRLALGLNCIGMMNIQFV 822

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
                 +V+ +E+N +   T     P ++        ++   ++
Sbjct: 823 I--KDEQVYVIEVNPRASRT----VPFLSKVTDIPMAQVATRLI 860



 Score = 65.9 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 37/206 (17%), Positives = 78/206 (37%), Gaps = 9/206 (4%)

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147
           + D+   KQ++   G P+  S +VN     ++    I  P +++P       G  +   +
Sbjct: 126 AEDRDLFKQLMEELGQPIPESEIVNTVDEALEFAAGIGYPVIVRPAFTLGGTGGGICSNE 185

Query: 148 QSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
           + +          +   Q LIE+ + G  E+   VM D + +   + V   + +     +
Sbjct: 186 EELQEIAENGLKLSPVTQCLIERSIAGFKEIEYEVMRDGADNA--LVVCNMENFDPVGIH 243

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
           +  +        I    Y+ ++  +    +A+   G        DP S K + +E+N  P
Sbjct: 244 TGDSIVFAPSQTISDYEYQMLRDASLKIIRALKIEGGCNVQLALDPHSFKYYVIEVN--P 301

Query: 267 GMTPVSIFPEMAAYAGYSFRELLLWM 292
            ++  S     +   GY   +L   +
Sbjct: 302 RVSRSS--ALASKATGYPIAKLAAKI 325


>gi|295113097|emb|CBL31734.1| Carbamoylphosphate synthase large subunit (split gene in MJ)
           [Enterococcus sp. 7L76]
          Length = 637

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/221 (11%), Positives = 71/221 (32%), Gaps = 13/221 (5%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--QHLISPPYVIKPL 133
            +    + I     + ++   +Q +    +P  P                I  P +++P 
Sbjct: 227 GVKILGTTIEDLDRAENRDLFEQALQELAIPQPPGDTATSAEEAVVIADRIGYPVLVRPS 286

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
                  + +++  + +   +  +   +    +L++ Y+ G E     + D    +    
Sbjct: 287 YVLGGRAMEIVENQKDLEDYMRHAVKASPEHPVLVDSYLLGQECEVDAICDGETVLIPGI 346

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
           +   +           +S  V P + +  +I   +          + C G+    F+   
Sbjct: 347 MEHIERAGVHS----GDSMAVYPPQYLSQEIQATIADYTKKLALGLNCVGMMNIQFVIHE 402

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
              +V+ +E+N +   T     P ++   G    ++    +
Sbjct: 403 --NRVYVIEVNPRASRT----VPFLSKITGIPMAQVATKAI 437


>gi|254458834|ref|ZP_05072258.1| RimK domain protein ATP-grasp [Campylobacterales bacterium GD 1]
 gi|207084600|gb|EDZ61888.1| RimK domain protein ATP-grasp [Campylobacterales bacterium GD 1]
          Length = 300

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 37/218 (16%), Positives = 78/218 (35%), Gaps = 27/218 (12%)

Query: 88  ALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPY---VIKPLKGGSSLGIIVI 144
           AL+ DK  +  V+ + G+      L +R        I   +   V KP  G   +G+  I
Sbjct: 96  ALTEDKFHTSFVLRNEGILTADYKLCHRDDGHQLKKIIKKWDKMVYKPTDGWGGVGLTKI 155

Query: 145 KKDQSIPLDLLQSSSWNHGDQL-LIEQYV--DGIELTCGVMGDASLDVTEIAVPKSDFYS 201
           + + ++  D+L         +   +E+++  D  +    ++    +         +    
Sbjct: 156 ESEANL--DMLLPFLNQMDLRYFYVEKFIKYDNTDFRVDIVDGEFVSCYGRKASDT---D 210

Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
           +    +S  S  +  A        E+  +A  A +  G   I   D ++D        LE
Sbjct: 211 WRTNITSGGSVFLREAN------DEIIEIAKKACKVCGV-DIGGVDIIYDLEKEAYVVLE 263

Query: 262 INVQPGMTPVSIFPEMAAYAGYSFR----ELLLWMVED 295
           +N  P        P+     G +F     +L++ +++ 
Sbjct: 264 VNGIPAFAT----PDQ-EKMGLNFNDKKIDLIVDLIDR 296


>gi|157736416|ref|YP_001489099.1| phosphoribosylglycinamide formyltransferase 2 [Arcobacter butzleri
           RM4018]
 gi|157698270|gb|ABV66430.1| phosphoribosylglycinamide formyltransferase 2 [Arcobacter butzleri
           RM4018]
          Length = 389

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 36/243 (14%), Positives = 84/243 (34%), Gaps = 37/243 (15%)

Query: 42  VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQ--- 98
           +  ++   KP      +         +QA+ +  +       ++ +A +++K  +++   
Sbjct: 66  LLDIIRREKPTYILPEVEAIN-----IQALFDAEK---EGFHVIPNADAVNKTMNRKNIR 117

Query: 99  --VVSSCGVPVCPSILVNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154
                   +P      V  F    ++  +I  P VIKP+   S  G  V + +  +    
Sbjct: 118 EFAAEQLKLPTSKYKFVTTFEALKEAASVIGFPCVIKPVMSSSGHGQSVARSEADLEKSW 177

Query: 155 LQS-SSWNHGDQLLIEQYVDGIELTCGVM-----GDASLDVTEIAVPKSDFYSYELKYSS 208
             +  +     +L++E+++   +    ++      D         + K   Y +      
Sbjct: 178 EMAKEARGDASELIVEEFIT-FDYEITMLTVRNGKDTVFCEPIGHIQKDGDYIFSW---- 232

Query: 209 LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP-- 266
                  P  +     K+ Q +A      +G RGI   +         V++ E++ +P  
Sbjct: 233 ------QPMNMSEIAVKKSQEIAKTITDGLGGRGIFGVELFV--KGDDVYFSEVSPRPHD 284

Query: 267 -GM 268
            GM
Sbjct: 285 TGM 287


>gi|154685558|ref|YP_001420719.1| carbamoyl phosphate synthase large subunit [Bacillus
           amyloliquefaciens FZB42]
 gi|154351409|gb|ABS73488.1| CarB [Bacillus amyloliquefaciens FZB42]
          Length = 1031

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 43/229 (18%), Positives = 83/229 (36%), Gaps = 14/229 (6%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYV 129
           LE   IP   +         D+    Q++    +               +    I  P +
Sbjct: 650 LEKAGIPLLGTSFETLDALEDRDLFYQLLDDLDLKHAKGETAYSKEEATEKASRIGYPVL 709

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           I+P      +G+I++  +  +   L   +   +   +LI+QY+ G EL   ++ D     
Sbjct: 710 IRPSYVIGGMGMIIVDSEAQMSELLENEAGMPY--PILIDQYITGKELEIDLISDGH--- 764

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
            E+ VP    +       S +S  +LP   +  D+ + ++  A      +  +GI    F
Sbjct: 765 -EVFVPTYTEHIERAGVHSGDSFAILPGPSVTPDMQRNIKEAAEKIAVKLAFKGIMNIQF 823

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           + D     +  LE+N +   T     P ++   G     L   ++  AS
Sbjct: 824 VIDDK-GDILVLEVNPRASRT----VPVVSKVMGVPMIPLAARLLAGAS 867



 Score = 64.8 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 47/286 (16%), Positives = 104/286 (36%), Gaps = 33/286 (11%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQID---------------------VDRSVGLV 45
           G ++E + S   G     AL++ G++V  ++                        S+  +
Sbjct: 21  GQAAEFDYS---GTQGCMALKEEGYRVILVNNNPATIMTDEAFADEIYFEPLTTDSIEAI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   KPD     L G    +  V      +L+   +    + +       D+ + + ++ 
Sbjct: 78  IEKEKPDGLLANLGGQTALNLAVKLEEAGVLKKHHVKLLGTSVETIQKGEDREQFRALMK 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
               PV  S +V+     +     I  P +++P       G  + K  ++    + Q+  
Sbjct: 138 ELDQPVPESEIVDNEEDALRFAESIGFPVILRPAYTLGGKGGGIAKTKEAFQTLIKQALL 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   Q L+E+ + G  E+   VM D++   T I V   +       ++  +        
Sbjct: 198 ASPISQCLVEKSIAGFKEIEYEVMRDSNH--TCITVCNMENIDPVGVHTGDSIVVAPSQT 255

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +  + Y+ ++  +     A+   G     F  DP S++ + +E+N 
Sbjct: 256 LTDEEYQMLRSASLAIISALDVVGGCNIQFAMDPFSKQYYVIEVNP 301


>gi|311280978|ref|YP_003943209.1| carbamoyl-phosphate synthase, large subunit [Enterobacter cloacae
           SCF1]
 gi|308750173|gb|ADO49925.1| carbamoyl-phosphate synthase, large subunit [Enterobacter cloacae
           SCF1]
          Length = 1074

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 42/278 (15%), Positives = 96/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D +              V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +    Q +L    +    +   A   + D+ R    +   G+    S +
Sbjct: 89  TMGGQTALNCALELERQGVLAEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLDTARSGI 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     +     +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHNMEEALAVAADVGYPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTKELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + +   +   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIEN----FDAMGIHTGDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RNASMAVLREIGVETGGSNVQFSVNPKTGRLIVIEMNP 302



 Score = 61.3 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/197 (15%), Positives = 75/197 (38%), Gaps = 10/197 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           LE   +P   +   A   + D+ R +Q V    +    +  V      ++    I  P V
Sbjct: 654 LEAAGVPVIGTSPDAIDRAEDRERFQQAVDRLKLKQPANATVTAIEQAVEKAKDIGYPLV 713

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  +  +      + S ++   +L+++++ D +E+    + D  + 
Sbjct: 714 VRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDRFLDDAVEVDVDAICDGEMV 773

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           +    +   +    +    S +S   LPA  +  +I   +++        +  RG+    
Sbjct: 774 LIGGIMEHIE----QAGVHSGDSACSLPAYTLSQEIQNVMRQQVQKLAFELQVRGLMNVQ 829

Query: 248 FLFDPLSRKVFWLEINV 264
           F       +V+ +E+N 
Sbjct: 830 FAV--KDNEVYLIEVNP 844


>gi|300853641|ref|YP_003778625.1| carbamoyl-phosphate synthase large chain [Clostridium ljungdahlii
           DSM 13528]
 gi|300433756|gb|ADK13523.1| carbamoyl-phosphate synthase large chain [Clostridium ljungdahlii
           DSM 13528]
          Length = 1068

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 28/215 (13%), Positives = 76/215 (35%), Gaps = 18/215 (8%)

Query: 71  ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV--PVCPSILVNRFTMDSQHLISPPY 128
            L+   I    +       + D+ +   ++    +  P    +      ++    +  P 
Sbjct: 648 FLKEKNIVTLGTTADQIDEAEDREKFDDLLERLNISRPKGKGVWSVEEGLEEARRLEFPV 707

Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS-- 186
           +++P       G+ +   ++ +   L  +   +  + +LI++Y+ G E+    + D    
Sbjct: 708 LVRPSYVLGGQGMEITYDEKELTYYLSMAFKKDRKNPILIDKYLMGREIEVDAICDGEDV 767

Query: 187 -LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
            +      + ++  +S        + T      I  ++ K++          IG +G+  
Sbjct: 768 LIPGIMEHLERAGIHS------GDSITMYPSQNISDEMKKKILDYTEKLATGIGIKGMIN 821

Query: 246 SDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFP 275
             F+       ++ +E+N       P ++ VS  P
Sbjct: 822 IQFI--EYKGNLYVIEVNPRASRTVPYISKVSGVP 854



 Score = 54.0 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 52/290 (17%), Positives = 103/290 (35%), Gaps = 41/290 (14%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQID-------VDRSVGL--------------V 45
           G ++E + S   G     +L + G +V  I+        DR V                V
Sbjct: 21  GQAAEFDYS---GTQACESLREEGLEVVLINSNPATIMTDREVADKVYIEPLTVEFVEKV 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGL-------VQAILELLEIPYTHSGILASALSMDKMRSKQ 98
           +   +PD   ++L G  G+  L        + ILE   +    + I A     D+   + 
Sbjct: 78  IKKERPD---SLLAGMGGQTALNLTVELYEKKILEKYNVNIIGTSIEAIKKGEDRELFRD 134

Query: 99  VVSSCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
            ++    PV  S ++          + I  P +++P       G  + + ++ +   L  
Sbjct: 135 TMNKINQPVVESEIITDMESGKKFANRIGYPVIVRPAYTLGGTGGGIAENEEQLETILES 194

Query: 157 SSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215
               +   Q+L+E+ + G  E+   VM D            +      +   + +S  V 
Sbjct: 195 GLELSSIGQVLLERSIKGWKEIEYEVMRD---SFGNCITVCNMENIDPVGIHTGDSIVVA 251

Query: 216 PAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           P++ +    Y+ ++  +     A+G  G        +P S +   +EIN 
Sbjct: 252 PSQTLSDKEYQMLRTASLDIINAVGIEGGCNVQLALNPKSFEYAVIEINP 301


>gi|255528110|ref|ZP_05394940.1| carbamoyl-phosphate synthase, large subunit [Clostridium
           carboxidivorans P7]
 gi|255508206|gb|EET84616.1| carbamoyl-phosphate synthase, large subunit [Clostridium
           carboxidivorans P7]
          Length = 864

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 41/267 (15%), Positives = 92/267 (34%), Gaps = 38/267 (14%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLV------- 68
           A+++ G K   I         D D +  L    L  D   N+++    E G++       
Sbjct: 580 AIKETGHKAIIINNNPETVSTDFDTADKLYFEPLHIDDVMNIVNREKVE-GVIVQLGGQT 638

Query: 69  -----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ-- 121
                Q + E   +    S   A  L+ D+ + ++ +    +P      V          
Sbjct: 639 SINLAQKLYEK-GVKILGSSFEAIDLAEDRDKFRKFLQKLNIPSPTGTAVISIEEAYMAV 697

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
             +  P V++P        + V+   + +   + ++   +    +LI++Y+ G E+    
Sbjct: 698 EELQYPVVVRPSYVIGGRAMEVVYDKKGLTKYMNEAVQVSTDHTILIDRYIKGTEIEVDA 757

Query: 182 MGDAS---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQA 237
           + D     +      V ++  +S        +S  V P   +  +    +        + 
Sbjct: 758 ICDGEDILMPGIMEHVERTGVHS-------GDSITVYPYMTLKEETINTLIEYTKKITKN 810

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINV 264
           +   G+    ++FD     V+ +E+N 
Sbjct: 811 MNIIGLVNIQYVFD--GNNVYVIEVNP 835



 Score = 51.7 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 45/288 (15%), Positives = 99/288 (34%), Gaps = 37/288 (12%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFN---------- 56
           G ++E + S   G     A+++ G +   I+ + +  +  +++  D  +           
Sbjct: 21  GQAAEFDYS---GTQACKAIKEEGIETILINSNPATIMTDSNM-ADKVYIEPLTLECVKE 76

Query: 57  ---------VLHGNFGEDG-------LVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
                    +L G  G+             +L+  ++        A   + D+   K+++
Sbjct: 77  IIEKERPDGILAGFGGQTALNLAMELKKHGVLDEFKVKLLGINSEAIKKAEDREEFKKLM 136

Query: 101 SSCGVPVCPSILVNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS 158
                P+  SI+        D       P +I+P       G  + +    +        
Sbjct: 137 IENNQPIPMSIIATNVDECVDFVDKYGFPVIIRPAYTLGGTGGGIAENMDQLLEICDLGI 196

Query: 159 SWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
             +   Q+L+EQ V G  EL   V+ D   +   I   ++      +   + +S  V P+
Sbjct: 197 KMSPIGQILLEQSVAGWKELEYEVIRDGKDNCIIICNMEN---IDPVGIHTGDSIVVAPS 253

Query: 218 K-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +    Y  +++ A    +++   G     F  D  S     +E+N 
Sbjct: 254 QTLRDKEYHMLRKAAIDIIRSLKIEGGCNIQFALDTESSNYVVIEVNP 301


>gi|256826967|ref|YP_003150926.1| biotin carboxylase /acetyl-coenzyme A carboxylase carboxyl
           transferase subunit alpha [Cryptobacterium curtum DSM
           15641]
 gi|256583110|gb|ACU94244.1| biotin carboxylase /acetyl-coenzyme A carboxylase carboxyl
           transferase subunit alpha [Cryptobacterium curtum DSM
           15641]
          Length = 450

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 70/220 (31%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+          ++ +            DK R++  + +CGVP  P    
Sbjct: 77  AIHPGYGFLSENAEFARACADNDLVWIGPAPECIERMGDKSRARDTMKACGVPTVPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS-----SSWNHGD 164
            I            +  P +IK   GG   G+  +     +      +     +++ + D
Sbjct: 137 TIESVEEARAFAESVGWPVLIKASAGGGGKGMREVHDPADLEAQFTAAKTEAQAAFGNDD 196

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             L +  +    +   V+ DA  +   +            K             +     
Sbjct: 197 VYLEKLVLRPRHVEIQVLADAFGNFAALCERDCSIQRRHQKLL----EEAPSPALDEVTR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +   A  A +A+G R     +FL D    K +++E+N 
Sbjct: 253 TAMCEAARRAVEAVGYRSAGTIEFLLD-SDNKFYFMEMNT 291


>gi|237809270|ref|YP_002893710.1| acetyl-CoA carboxylase, biotin carboxylase [Tolumonas auensis DSM
           9187]
 gi|237501531|gb|ACQ94124.1| acetyl-CoA carboxylase, biotin carboxylase [Tolumonas auensis DSM
           9187]
          Length = 446

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 76/221 (34%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         L  DK+ + + +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAEQVEKSGFIFVGPKAETIRLMGDKVSAIEAMKKAGVPCVPGSGG 136

Query: 112 ---LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGD 164
                 +        I  P +IK   GG   G+ V++ ++ +   +     ++  +   D
Sbjct: 137 PIGEDAKQNAAIAKRIGYPVIIKAAGGGGGRGMRVVRNEEELQNSVALTKSEAGQFFGND 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            + +E+Y++    +   V+ D   +   +            K             I  D+
Sbjct: 197 MVYMEKYLENPRHIEIQVLADGQGNAIYLGERDCSMQRRHQKVL----EEAPAPGITEDM 252

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +      A   I  RG    +FL+   + + +++E+N 
Sbjct: 253 RRYIGERCVRACIEINYRGAGTFEFLY--ENGEFYFIEMNT 291


>gi|153004934|ref|YP_001379259.1| carbamoyl phosphate synthase large subunit [Anaeromyxobacter sp.
           Fw109-5]
 gi|152028507|gb|ABS26275.1| carbamoyl-phosphate synthase, large subunit [Anaeromyxobacter sp.
           Fw109-5]
          Length = 1083

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 49/278 (17%), Positives = 96/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVDRSV------------GLVLAHLKPDLAFN 56
           SG     AL++ G+++  +         D   +               +LA  KPD+   
Sbjct: 29  SGTQACKALKEEGYEIVLLNSNPATIMTDPGFADRTYVEPITPAVAEQILAREKPDVLLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G    +  V       L    +    + + A   + D++  K  +   GV +  S  
Sbjct: 89  TLGGQTALNLAVALAKNGALARHGVELIGAQLEAIEKAEDRLLFKAAMERVGVELPKSGY 148

Query: 113 VNRFTMDS--QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
              +         I  P +I+P       G  V    +       ++ + +    +L E+
Sbjct: 149 ATSWEEARAIAEDIGFPIIIRPSFTMGGEGGGVAYNREEFEPLARRALTLSPTHTILCEE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            + G  E    VM D + +V  I   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SIIGWKEYELEVMRDRNDNVVIICSIEN----FDPMGVHTGDSITVAPAQTLTDKEYQRM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +       + IG   G S   F   P + ++  +E+N 
Sbjct: 265 RDAGIRIIREIGVETGGSNIQFGVHPRTGRMVVIEMNP 302



 Score = 62.1 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 47/302 (15%), Positives = 107/302 (35%), Gaps = 36/302 (11%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ------ 69
           AL  AG++   +         D D S  L    +  +    ++H    E  +VQ      
Sbjct: 589 ALSRAGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVHVEKPEGLIVQYGGQTP 648

Query: 70  ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ--HL 123
                 L  L +P   +   A   + D+ R   ++   G+    + +             
Sbjct: 649 LKLAVPLHELGVPIFGTTPDAIDRAEDRERFAALIEKLGLRQPQNGVARSADEAFAVARR 708

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVM 182
           I  P +++P        + V+  D+ +   L ++   ++   +L+++++ D  E+   V+
Sbjct: 709 IGYPVMVRPSYVLGGRAMEVVYDDKDLDTYLREAVQASNERPVLVDRFLRDAAEVDVDVV 768

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    V    +   +       +S  ++  + P  +  +   E+++ +    + +G  G
Sbjct: 769 SDGEDVVVGGVMEHIEEAGI---HSGDSACALPPFSLAPERVAEIEQQSIALAKELGVVG 825

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE-----LLLWMVEDAS 297
           +    F        V+ LE+N +   T     P +    G    +     ++   +E+A 
Sbjct: 826 LMNVQFAI--QGNDVYVLEVNPRASRT----VPFVGKATGLPLAKAGSLCMVGKSLEEAG 879

Query: 298 CL 299
            L
Sbjct: 880 AL 881


>gi|77166030|ref|YP_344555.1| carbamoyl-phosphate synthase, large subunit, glutamine-dependent
           [Nitrosococcus oceani ATCC 19707]
 gi|254436388|ref|ZP_05049894.1| carbamoyl-phosphate synthase, large subunit [Nitrosococcus oceani
           AFC27]
 gi|76884344|gb|ABA59025.1| carbamoyl-phosphate synthase large subunit [Nitrosococcus oceani
           ATCC 19707]
 gi|207088078|gb|EDZ65351.1| carbamoyl-phosphate synthase, large subunit [Nitrosococcus oceani
           AFC27]
          Length = 1073

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 49/278 (17%), Positives = 103/278 (37%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     +L++ G++V  +         D +            ++V  ++   +PD    
Sbjct: 29  SGAQACKSLKEEGYRVILVNSNPATIMTDPELADATYIEPITWKTVAKIIEKERPDALLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +    + ILE  ++    +   A   + D+   +Q +   G+ +  S +
Sbjct: 89  TMGGQTALNCALDLAREGILERYDVEMIGANQEAINKAEDRDLFRQAMQKIGLDMPRSAI 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +       +Q  +  P VI+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHSLEEAQQAQRDLGFPIVIRPSFTLGGSGGGIAYNREEFVEICERGLDLSPNSELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            V G  E    V+ D+  +   I   ++ D           +S  V PA+ +    Y+ +
Sbjct: 209 SVLGWKEFEMEVVRDSKDNCIIICTIENLDPMGVHT----GDSITVAPAQTLTDKEYQVM 264

Query: 228 QRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
           +  A    + IG   G S   F  DP + ++  +E+N 
Sbjct: 265 RDAALAVLREIGVDTGGSNVQFAVDPENGRLIIIEMNP 302



 Score = 63.2 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 25/197 (12%), Positives = 73/197 (37%), Gaps = 10/197 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--QHLISPPYV 129
           LE    P   +   +  L+ D+ R + ++   G+   P+               I  P V
Sbjct: 653 LEAAGAPIIGTSPDSIDLAEDRERFQWLIEKLGLKQPPNRTARTQEEAIRLAAEIGYPLV 712

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTC-GVMGDASL 187
           ++P        + ++     +   + ++ S ++   +L+++++D   E+    +     +
Sbjct: 713 VRPSYVLGGRAMEIVYNADELARYMKEAVSVSNDSPVLLDRFLDEATEVDVDAICDGEQV 772

Query: 188 DVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
            V  I     +       +S  ++  + P  +   +   ++   +   + +   G+  + 
Sbjct: 773 MVGGI----MEHIEQAGVHSGDSACALPPFSLSAAVQNRLREQVYNMARELKVVGLMNTQ 828

Query: 248 FLFDPLSRKVFWLEINV 264
           F     + +++ LE+N 
Sbjct: 829 FAI--QANEIYILEVNP 843


>gi|325576959|ref|ZP_08147530.1| phosphoribosylglycinamide formyltransferase 2 [Haemophilus
           parainfluenzae ATCC 33392]
 gi|325160917|gb|EGC73036.1| phosphoribosylglycinamide formyltransferase 2 [Haemophilus
           parainfluenzae ATCC 33392]
          Length = 393

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 52/307 (16%), Positives = 102/307 (33%), Gaps = 52/307 (16%)

Query: 19  GKACASALEDAGFKVSQID--------------------VDRSVGLVLAHLKPDLAFNVL 58
           GK     L+  G +V  +D                       ++  ++   +PD     +
Sbjct: 24  GKEVVIELQRLGVEVIAVDRYENAPAQQVAHRAYTISMLDGAALKALVEKERPDYIVPEV 83

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKM-RSKQVVSSCGVPVCPSILVNRFT 117
                 D L++  LE            A+ L+M++    +      G+P  P   V+ F 
Sbjct: 84  EAI-ATDTLIE--LEKAGFNVV-PTAKATKLTMNREGIRRLAAEELGLPTSPYQFVDNFA 139

Query: 118 --MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH--GDQLLIEQYVD 173
               +   I  P V+KP+   S  G  ++K    +      +         ++++E +V 
Sbjct: 140 DFQSAVEKIGIPCVVKPIMSSSGHGQSILKSKDDLQKAWDYAQQGGRAGAGRVIVEGFVK 199

Query: 174 GIELTCGVMGDASLDVTEIAVP---KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
             +    ++    ++ T    P   + +   Y   +         P  +     K+ Q +
Sbjct: 200 -FDYEITLLTVRHINGTSFLAPIGHRQEDGDYRESW--------QPQAMSDAALKKAQDV 250

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP---GMT-----PVSIFPEMAAYA- 281
           A     A+G RGI   +        +V + E++ +P   GM       +S F   A    
Sbjct: 251 AEKITTALGGRGIFGVEMFV--CGDEVIFNEVSPRPHDTGMVTLISQELSEFALHARAIL 308

Query: 282 GYSFREL 288
           G    E+
Sbjct: 309 GLPIPEI 315


>gi|297180875|gb|ADI17080.1| carbamoylphosphate synthase large subunit (split gene in mj)
           [uncultured alpha proteobacterium HF0010_30A23]
          Length = 986

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 95/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D D              V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPDLADATYVEPITPEMVAKIIEKERPDALLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G  G +  +       LE   +    +   +   + D+ + +  +   G+    S+L
Sbjct: 89  TMGGQTGLNTGLALHDDGTLEKYGVELIGARAESIEKAEDRQKFRDAMDKIGLESPRSLL 148

Query: 113 VNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           V       D+      P +++P       G  +    +     L      +   ++L+E+
Sbjct: 149 VTTMEQAEDALAKTGLPAILRPSFTLGGEGGGICYNREEFLEMLAGGLRLSPVTEVLVEE 208

Query: 171 YVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEV 227
            + G  E    V+ D + + +   ++   D           +S  V P+  +     + +
Sbjct: 209 SILGWKEFEMEVVRDHADNCIIVCSIENIDPMGVHT----GDSITVAPSLTLTDKELQIM 264

Query: 228 QRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RDASIAVLREIGVDTGGSNVQFAVNPDNGRLIVIEMNP 302



 Score = 62.8 bits (152), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 82/221 (37%), Gaps = 12/221 (5%)

Query: 67  LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL--VNRFTMDSQHLI 124
            + A LE   +P   +   A  L+ D+ R + +++  G+    + L             I
Sbjct: 616 KIAAALEKAGVPILGTSPDAIDLAEDRERFQHLLNDVGLLQPSNGLGRTPEEVEAVAEAI 675

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMG 183
             P +++P       G+ ++   Q +   + ++   +  + +LI+ Y+ D IE+    + 
Sbjct: 676 GYPVLLRPSYVLGGRGMEIVNDTQRLRKYVSEAVKVSGDNPVLIDSYLRDAIEVDVDAIC 735

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D         +   +       +S  ++  + P  +   + ++++  A     A+   G+
Sbjct: 736 DGEQVYIAGIMEHIEEAGI---HSGDSACSLPPYSLSDALVEQLKAQAEKLAVALNVHGL 792

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
               F        ++ LE+N +   T     P +A   G  
Sbjct: 793 MNVQFAV--QGEAIYVLEVNPRASRT----VPFVAKATGVP 827


>gi|218283802|ref|ZP_03489725.1| hypothetical protein EUBIFOR_02319 [Eubacterium biforme DSM 3989]
 gi|218215608|gb|EEC89146.1| hypothetical protein EUBIFOR_02319 [Eubacterium biforme DSM 3989]
          Length = 1069

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/193 (12%), Positives = 70/193 (36%), Gaps = 9/193 (4%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVC--PSILVNRFTMDSQHLISPPYVIKPL 133
            +    + + +  L+ D+   + ++    +P     + +    ++   + I  P +++P 
Sbjct: 650 GVKILGTSLHSIDLAEDRHEFEAMLHKLNIPQPQGETAVTVEESLVIANKIGYPVLVRPS 709

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSW-NHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192
                  + ++  D  + + +  +    +H   +L+++Y+ G EL    + D        
Sbjct: 710 YVLGGRAMEIVHNDDELRVYMATAVKEISHDAPILVDKYIVGKELEIDAIADGKNVYIPG 769

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
            +   +           +S  V P +I    + + +        +     G+    F+ D
Sbjct: 770 VMEHIERAGIHS----GDSISVYPTQIINEKVKETIIDYGTRIGKGFEFVGLYNIQFIVD 825

Query: 252 PLSRKVFWLEINV 264
             +  V+ LE+N 
Sbjct: 826 KENN-VYVLEVNP 837



 Score = 65.9 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 57/291 (19%), Positives = 102/291 (35%), Gaps = 43/291 (14%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQID------------VDRSVGLVLA------- 47
           G ++E + +   G     +L + G++V  I+             DR     L        
Sbjct: 21  GQAAEFDYA---GSQACQSLREEGYEVILINSNPATIMTDTAIADRVYIEPLTVDFAKRV 77

Query: 48  --HLKPDLAFNVLHGNFG--------EDGLVQAILELLEIPYTHSGILASALSMDKMRSK 97
               +PD     L G  G        EDG    IL+   +    + + A   + D+   +
Sbjct: 78  IYKERPDAILGSLGGQTGLNLVVELHEDG----ILDEFGVEILGTDLHAINRAEDRELFR 133

Query: 98  QVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
            ++     PV  S++V+     ++       P V++P       G      +  +     
Sbjct: 134 SLMQEINEPVPESMIVHTVEEAVEFAKREGYPLVVRPAYTLGGTGGGFADDEAELREICD 193

Query: 156 QSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHV 214
                +   Q LIEQ + G  E+   VM DA  +   I V   +       ++  +ST V
Sbjct: 194 SGLKASPVHQCLIEQSIAGYKEIEYEVMRDAKDNA--IVVCNMENIDPVGVHT-GDSTVV 250

Query: 215 LPAKIPLDIYKEVQRLA-FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            P +   D   ++ R A     +A+   G        +P S K + +E+N 
Sbjct: 251 APVQTLTDRENQMLRNASLKIIRALKICGGCNVQLALNPDSFKYYVIEVNP 301


>gi|320534322|ref|ZP_08034811.1| carbamoyl-phosphate synthase L chain, ATP binding domain protein
           [Actinomyces sp. oral taxon 171 str. F0337]
 gi|320133457|gb|EFW25916.1| carbamoyl-phosphate synthase L chain, ATP binding domain protein
           [Actinomyces sp. oral taxon 171 str. F0337]
          Length = 626

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 38/216 (17%), Positives = 71/216 (32%), Gaps = 13/216 (6%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV-PVC---P 109
            +H  +G   ED      +    I +      A     DKM ++       V PV     
Sbjct: 90  AIHPGYGFLSEDADFARSIIEAGITWVGPSPEAMDALGDKMSARDTAEQARVAPVPGITD 149

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
           S+      +D       P  +K   GG   GI V+  D  +       S+   G  L++E
Sbjct: 150 SVTDADTVIDFAAAHGYPVALKRTDGGGGRGITVLHNDDEVRTTPAFESAAQGGGTLILE 209

Query: 170 QYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           ++V     +      D+      ++           K             +P  ++  + 
Sbjct: 210 RFVTAARHVETQCARDSHGGFAVVSTRDCSLQRRNQKLL----EEAPAPFLPEGVHDRLV 265

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +    + +   G++  +FL  P    V++LE+N 
Sbjct: 266 EASRRLLETVDYVGVATCEFLLTPEGN-VWFLEVNP 300


>gi|307169536|gb|EFN62178.1| Pyruvate carboxylase, mitochondrial [Camponotus floridanus]
          Length = 1196

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 31/205 (15%), Positives = 77/205 (37%), Gaps = 17/205 (8%)

Query: 69  QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLI 124
           QA+ +   I +            DK+ ++Q     GVP+ P     +  +   ++     
Sbjct: 128 QAVTD-AGIRFIGPSPKVVQQMGDKVAARQAAIQAGVPIVPGTDGPVTTSDEAIEFCMKH 186

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPL----DLLQSSSWNHGDQLLIEQYVD-GIELTC 179
             P + K   GG   G+ V+++ + +         ++++      + IE++++    +  
Sbjct: 187 GLPVIFKAAYGGGGRGMRVVRQMEEVREMFDRASSEAAAAFGNGAMFIEKFIERPRHIEV 246

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAI 238
            ++GD + +V  +           ++        + PA  +   I  ++   A    + +
Sbjct: 247 QLLGDHAGNVVHLYE-----RDCSVQRRHQKVVEIAPAPSLSTKIRDKMTEYAVKLAKHV 301

Query: 239 GCRGISRSDFLFDPLSRKVFWLEIN 263
           G       +FL D      +++E+N
Sbjct: 302 GYANAGTVEFLVDESGN-FYFIEVN 325


>gi|255080392|ref|XP_002503776.1| acetyl-coa carboxylase [Micromonas sp. RCC299]
 gi|226519043|gb|ACO65034.1| acetyl-coa carboxylase [Micromonas sp. RCC299]
          Length = 2189

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 41/245 (16%), Positives = 84/245 (34%), Gaps = 27/245 (11%)

Query: 42  VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +  V    + D  +    G+  E+  + A L   +I +      +     DK+ +  +  
Sbjct: 89  IVKVARRCQADAVWPG-WGHASENPKLPAALAYHDIAFLGPSAESMDAVGDKICANILAQ 147

Query: 102 SCGVPVCPS---------ILVNRF------------TMDSQHLISPPYVIKPLKGGSSLG 140
           SC V V P          I +                 +S   +  P +IK  +GG   G
Sbjct: 148 SCDVNVIPWSGSGLTVPDISIPEDVLLAATLGDLAQAEESAKKVGFPLMIKASEGGGGKG 207

Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ-YVDGIELTCGVMGDASLDVTEIAVPKSDF 199
           I ++   + +    +Q  +   G  + I+Q   +   L   V+ D   +   +       
Sbjct: 208 IRMVSNMEELRTGFVQVQAEVPGSPVFIQQLSTNSRHLEVQVVADKHGNAISLYGRDCSV 267

Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
                K        V P ++  ++ +   RLA          G+   ++L++  + +  +
Sbjct: 268 QRRHQKIIEEGPVTVAPRELCEELERGAVRLAKKVRY----SGVGTVEYLYNITTGEYSF 323

Query: 260 LEINV 264
           LE+N 
Sbjct: 324 LEVNP 328


>gi|167569328|ref|ZP_02362202.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia
           oklahomensis C6786]
          Length = 404

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 51/277 (18%), Positives = 95/277 (34%), Gaps = 38/277 (13%)

Query: 19  GKACASALEDAGFKVSQID----------------VDRSVGLVLAHL----KPDLAFNVL 58
           GK    AL+  G +V  +D                +D +    L  L    +P L    +
Sbjct: 27  GKEVIIALQRLGVEVIAVDRYPNAPGHQVAHRAHVIDMTDPDALRALVDAERPHLVVPEI 86

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKM-RSKQVVSSCGVPVCPSILVNRFT 117
                 D L  A +E   I        A+ L+M++    +    + G+P  P      F 
Sbjct: 87  EAI-ATDAL--ASIEAAGIAEVIPTARATQLTMNREGIRRLAAETLGLPTSPYAFAQSFD 143

Query: 118 M--DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH--GDQLLIEQYV- 172
               +   I  P V+KP+   S  G  V+K+D  +      + +       ++++E +V 
Sbjct: 144 EFKAAVARIGFPCVVKPVMSSSGKGQSVVKRDADVESAWQYAMAGGRVNHGRVIVEGFVQ 203

Query: 173 ---DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
              +  +L+   +  ASL+                 Y         P  +     +  + 
Sbjct: 204 FDYEITQLSVRAIDPASLETRTYFCEPIGHVQVAGDY----VESWQPQPMSAKALERSRD 259

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
           +A     A+G RGI   +         V++ E++ +P
Sbjct: 260 IAHRVTAALGGRGIFGVELFVR--GDDVWFSEVSPRP 294


>gi|307718435|ref|YP_003873967.1| carbamoyl-phosphate synthase large chain [Spirochaeta thermophila
           DSM 6192]
 gi|306532160|gb|ADN01694.1| carbamoyl-phosphate synthase large chain [Spirochaeta thermophila
           DSM 6192]
          Length = 1071

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 54/279 (19%), Positives = 105/279 (37%), Gaps = 37/279 (13%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL++ G++V  ++ + +                     +  ++   +PD    
Sbjct: 29  SGTQAVKALKEEGYRVILVNPNPATIMTTPGLADVVYMEPLEVPYLEEIIRKERPDALLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G  G +  V+     +L+   +    + + A   + D+ + K+VV+S G+ V  S +
Sbjct: 89  TMGGQTGLNLSVELYEAGVLDRYGVELIGANVEAIRKAEDRGQFKEVVTSIGLDVPRSAM 148

Query: 113 VNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           V            I  P VI+P       G  +    +   L L ++   +   + LIE+
Sbjct: 149 VKSLQEGRKVMEEIGLPLVIRPSFTLGGKGGSIASTPEDFELLLERALLESPVHEALIEE 208

Query: 171 YVDG-IELTCGVMGDA-SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            + G  E    VM D     V   ++   D           +S  V P + +    Y+++
Sbjct: 209 SLLGWKEFELEVMRDHMDNAVIVCSIENIDPMGVHT----GDSVTVAPIQTLSDWEYQKM 264

Query: 228 QRLAFLAHQAIG--CRGISRSDFLFDPLSRKVFWLEINV 264
           +       +AIG  C G S   F   P + ++  +E+N 
Sbjct: 265 RTAGIEVLRAIGVDCGG-SNVQFAVRPDTGRMVVIEMNP 302



 Score = 48.6 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/208 (11%), Positives = 67/208 (32%), Gaps = 12/208 (5%)

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYVIKPLKGGS 137
             + +     + D+     +V   G+    +               I  P +++P     
Sbjct: 656 VGTPVRGIKEAEDRGFFADLVRRVGLNQPANRAARTLEEVRAFAEEIGYPVLLRPSFVLG 715

Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPK 196
              + +      +   L +    +    +L++Q++ D  E     + D         +  
Sbjct: 716 GKSMFIAFSPDELEEFLRRGVEISPDRPVLVDQFLEDAFEYDVDAVSDGENVYIGGIMQH 775

Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256
            +       +S  ++    P K   ++  +++       + +G +G    +  +      
Sbjct: 776 IEAAGI---HSGDSACVFPPYKSNPEVLTQMKEATVKIARELGVKGF--LNIQYAVKDDV 830

Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYS 284
           ++ LE+N +   T     P ++  +G +
Sbjct: 831 LYVLEVNPRASRT----VPYLSKASGVN 854


>gi|225574486|ref|ZP_03783096.1| hypothetical protein RUMHYD_02563 [Blautia hydrogenotrophica DSM
           10507]
 gi|225038273|gb|EEG48519.1| hypothetical protein RUMHYD_02563 [Blautia hydrogenotrophica DSM
           10507]
          Length = 1068

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 34/222 (15%), Positives = 80/222 (36%), Gaps = 13/222 (5%)

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYVIKP 132
           + +    +       + D+    Q++  C +P      V        + + +  P +++P
Sbjct: 650 MGVKILGTSAENVDAAEDRELFDQILEECEIPRPKGHTVYTAEEAKKAANELGYPVLVRP 709

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192
                  G+ +   DQ +   +   +       +L+++Y+ G E+    + D      EI
Sbjct: 710 SYVLGGQGMQIAINDQDVEEFIGIINRIAQEHPILVDKYLMGKEIEVDAVCDGE----EI 765

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
            +P    +       S +S  V PA+ I     K ++       +++   G+    F+  
Sbjct: 766 LIPGIMEHIERAGIHSGDSISVYPAQTISETAKKTIEEYTRRLAKSLHVIGMINIQFIV- 824

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
               +V+ +E+N +   T     P ++   G     L   ++
Sbjct: 825 -CGEEVYVIEVNPRSSRT----VPYISKVTGIPIVPLATKVI 861



 Score = 57.4 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 44/286 (15%), Positives = 99/286 (34%), Gaps = 33/286 (11%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQID-------VDRSVG--------------LV 45
           G ++E + +   G     +L++ G +V  ++        D+ +                +
Sbjct: 21  GQAAEFDYA---GTQACRSLKEEGLEVVLLNSNPATIMTDKDIADKVYIEPLTVEVVEQL 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   KPD     L G  G +  ++      L    +    +       + D+   K  + 
Sbjct: 78  ILKEKPDSVLPTLGGQAGLNLAMELEEAGFLREHHVRLIGTTSETIKKAEDRQEFKDTME 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G PV  S +V   +  ++  + I  P V++P       G  +   +  +   L     
Sbjct: 138 KIGEPVAASKVVTTVQEGVEFTNSIGYPVVLRPAYTLGGSGGGIANNEFELREILENGLR 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   ++L+E+ + G  E+   VM D++ +   I V   +       ++  +        
Sbjct: 198 LSRVGEVLVERCIAGWKEIEYEVMRDSAGN--CITVCNMENIDPVGVHTGDSIVVAPSQT 255

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +    Y+ ++  A      +G  G     +   P S +   +E+N 
Sbjct: 256 LGDKEYQMLRTSALNIITELGITGGCNVQYALHPESFEYCVIEVNP 301


>gi|221046244|dbj|BAH14799.1| unnamed protein product [Homo sapiens]
          Length = 201

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 30/140 (21%), Positives = 55/140 (39%), Gaps = 12/140 (8%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H   G   E+     + +   I +      A      K  SK ++++ GVPV      
Sbjct: 15  AIHPGCGFLSENMEFAELCKQEGIIFIGPPPSAIRDMGIKSTSKSIMAAAGVPVVEGYHG 74

Query: 113 ---VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
               ++   +    I  P +IK ++GG   G+ +++ +Q     L  +          D 
Sbjct: 75  EDQSDQCLKEHARRIGYPVMIKAVRGGGGKGMRIVRSEQEFQEQLESARREAKKSFNDDA 134

Query: 166 LLIEQYVD-GIELTCGVMGD 184
           +LIE++VD    +   V GD
Sbjct: 135 MLIEKFVDTPRHVEVQVFGD 154


>gi|58038910|ref|YP_190874.1| acetyl-CoA carboxylase biotin carboxylase subunit [Gluconobacter
           oxydans 621H]
 gi|58001324|gb|AAW60218.1| Acetyl-CoA carboxylase, biotin carboxylase [Gluconobacter oxydans
           621H]
          Length = 450

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 78/220 (35%), Gaps = 18/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+      +E   + +            DK+ +K  + + GVP+ P    
Sbjct: 77  AIHPGYGFLSENAEFAETVEEHGLAFIGPTAEHIRTMGDKITAKTTMRALGVPLVPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL----DLLQSSSWNHGDQ 165
            +   +   +    +  P +IK   GG   G+ V      I         ++ +    D+
Sbjct: 137 ALPDLQAAREVAEKVGYPVLIKAAAGGGGRGMKVAMTADDIEEAWSVARAEARAAFGNDE 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+Y+     +   ++GDA  +V               K          PA +     
Sbjct: 197 VYLEKYLNRPRHIELQILGDAHGNVVHFGERDCSLQRRHQKLLEEAG---SPA-LTDAER 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +E+ R A  A   +G R     +FL+     +  ++E+N 
Sbjct: 253 EEIGRTATEALSRMGYRNAGTLEFLY--QDGQFCFIEMNT 290


>gi|194333332|ref|YP_002015192.1| carbamoyl-phosphate synthase L chain ATP-binding [Prosthecochloris
           aestuarii DSM 271]
 gi|194311150|gb|ACF45545.1| Carbamoyl-phosphate synthase L chain ATP-binding [Prosthecochloris
           aestuarii DSM 271]
          Length = 495

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 47/278 (16%), Positives = 100/278 (35%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G++V  +         DV+              V  ++   KPD    
Sbjct: 29  SGTQACRALKEDGYRVILVNSNPATIMTDVEFAHSTYIEPITPEYVQKIIEKEKPDALLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  V    + ILE   +    + + A   + ++      +   G+ +     
Sbjct: 89  TMGGQTALNTAVALAERGILERNGVELIGAKLRAIRKAENRELFSDAMKKLGLEMAKGFF 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           V   +   ++   I  P VI+P       G    +        + +  + +   ++L+E+
Sbjct: 149 VRNEKEAKEALESIGLPIVIRPSFTLGGTGGGFAETKADYYDAVRRGIAESPIGEVLVEE 208

Query: 171 YVDG-IELTCGVMGDASLDV-TEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + +V    ++   D           +S  V PA+ +    Y+ +
Sbjct: 209 CLIGWKEFELEVIRDLADNVIIVCSIENVDPMGVHT----GDSITVAPAQTLSDRQYQAL 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RDASVKIIREIGVETGGSNIQFAINPDNGRIVVIEMNP 302


>gi|283779305|ref|YP_003370060.1| carbamoyl-phosphate synthase, large subunit [Pirellula staleyi DSM
           6068]
 gi|283437758|gb|ADB16200.1| carbamoyl-phosphate synthase, large subunit [Pirellula staleyi DSM
           6068]
          Length = 1095

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 50/280 (17%), Positives = 98/280 (35%), Gaps = 39/280 (13%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+ V  +         D +              V  V+   +PD    
Sbjct: 29  SGTQACKALREEGYVVVLVNSNPATIMTDPEMADRTYIEPLTWEVVSKVIEKERPDAILP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G  G +  +      +LE   +    +     A + ++ + KQ +   G+  C    
Sbjct: 89  TLGGQTGLNLAMDLAKHGVLEKYGVEMIGANAKVIAKAEEREQFKQAMEKIGLECCRGET 148

Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD--QLLI 168
           +       +   ++  P V++P       G  +         D+L     +     ++LI
Sbjct: 149 IKTVEDARRVLQMVGLPCVVRPSFTLGGSGSAIAYNQGEF--DMLVRRGLDQSPVREVLI 206

Query: 169 EQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYK 225
           E+ + G  E    VM D   +V  I   ++    ++       +S  V PA+ +    Y+
Sbjct: 207 EESIIGWKEYEMEVMRDMDDNVVIICSIEN----FDPMGVHTGDSITVAPAQTLSDKEYQ 262

Query: 226 EVQRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
            ++  +    + IG   G S   F   P + ++  +E+N 
Sbjct: 263 RMRDASLAVIREIGVETGGSNIQFAIHPQTGRMIVIEMNP 302



 Score = 60.5 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 31/218 (14%), Positives = 78/218 (35%), Gaps = 12/218 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH--LISPPYV 129
           L    +P   + + A   S D+ +  Q++S  G+    + +    +        +  P +
Sbjct: 659 LSNAGVPVIGTSVDAIEASEDREQFAQMLSRLGLKQPANGIARNMSQARTEGAKVGFPSL 718

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + +          + ++     G  +LI++++ D  E+    + D    
Sbjct: 719 VRPSFVLGGRAMEICYDQAQFERFVAEAFVVAQGQPVLIDRFLEDATEVDVDCISDGENV 778

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           V    +   +       +S  ++  + P  +P  + +E++       + +   G+    F
Sbjct: 779 VIAGIMEHIEEAGV---HSGDSACAIPPYSLPGPVIQEIREATHAMARHLKVVGLMNVQF 835

Query: 249 LFDPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGYS 284
                  +  ++ LE+N +   T     P +A   G S
Sbjct: 836 AVKKEEGRPVIYILEVNPRASRT----VPFVAKATGLS 869


>gi|113953489|ref|YP_730413.1| carbamoyl phosphate synthase large subunit [Synechococcus sp.
           CC9311]
 gi|113880840|gb|ABI45798.1| carbamoyl-phosphate synthase, large subunit [Synechococcus sp.
           CC9311]
          Length = 1107

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 55/279 (19%), Positives = 94/279 (33%), Gaps = 36/279 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLA------------FN 56
           SG     AL   G++V  I         D + +    +  L PD+               
Sbjct: 29  SGTQACKALRAEGYEVILINSNPASIMTDPEMADRTYVEPLTPDVVTRVIELERPDALLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G    +  V       L+   +    + + A   + D+   KQ +   GV VCPS  
Sbjct: 89  TMGGQTALNLAVALSKDGTLDRFGVELIGADLKAIQKAEDRQLFKQAMERIGVHVCPSGI 148

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
              +         + S P +I+P       G  +    +            +   Q+LIE
Sbjct: 149 ASTLEEAESVGASISSYPRIIRPAFTLGGSGGGIAYNPEEFSAICKTGLDASPVSQILIE 208

Query: 170 QYVDG-IELTCGVMGD-ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKE 226
           + + G  E    VM D A   V   ++   D           +S  V PA+ +    Y+ 
Sbjct: 209 KSLLGWKEFELEVMRDLADNVVIVCSIENLDPMGVHT----GDSITVAPAQTLTDREYQR 264

Query: 227 VQRLAFLAHQAIG-CRGISRSDFLFDPLSRKVFWLEINV 264
           ++  +    + IG   G S   F  +P   +V  +E+N 
Sbjct: 265 LRDQSIAIIREIGVATGGSNIQFAINPADGEVVVIEMNP 303



 Score = 51.3 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 33/220 (15%), Positives = 81/220 (36%), Gaps = 16/220 (7%)

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---ISPPYVIKPLKGGS 137
            +   +  L+ D+ + + ++    +    + L  R  ++++ +   +  P V++P     
Sbjct: 687 GTSPASIDLAEDREQFEAILRKLEIRQPRNGLA-RSEVEARSIAGNVGYPVVVRPSYVLG 745

Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPK 196
              + V+  ++ +   + ++        +LI+QY++  +E+    + D    V    + +
Sbjct: 746 GRAMEVVYDEEELNRYMKEAVQVEPDHPVLIDQYLENAVEVDVDALCDHEGTVVIGGLME 805

Query: 197 SDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF---LFDP 252
              +       S +S   LP   +  D    ++R +      +  +G+    F       
Sbjct: 806 ---HIEPAGIHSGDSACCLPSISLSEDALSLIRRWSEALAITLKVQGLINLQFAVQRAAD 862

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
              KVF +E N +   T     P +A   G     L   +
Sbjct: 863 GQEKVFIIEANPRASRT----VPFVAKATGVPLARLATRL 898


>gi|293406858|ref|ZP_06650784.1| biotin carboxylase [Escherichia coli FVEC1412]
 gi|291426864|gb|EFE99896.1| biotin carboxylase [Escherichia coli FVEC1412]
          Length = 495

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 80/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         L  DK+ +   +   GVP  P    
Sbjct: 77  AIHPGYGFLSENANFAEQVERSGFIFIGPKAETIRLMGDKVSAIAAMKKAGVPCVPGSDG 136

Query: 112 -LVNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
            L +    +      I  P +IK   GG   G+ V++ D  +   +     ++ +    D
Sbjct: 137 PLGDDMDKNRAIAKRIGYPVIIKASGGGGGRGMRVVRGDAELAQSISMTRAEAKAAFSND 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+Y++    +   V+ D   +   +A           K          PA  I  +
Sbjct: 197 MVYMEKYLENPRHVEIQVLADGQGNAIYLAERDCSMQRRHQK-----VVEEAPAPGITPE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + + +      A   IG RG    +FLF   + + +++E+N 
Sbjct: 252 LRRYIGERCAKACVDIGYRGAGTFEFLF--ENGEFYFIEMNT 291


>gi|19569292|gb|AAL92051.1|AF486580_1 acetyl CoA carboxylase BCCP subunit [Amycolatopsis mediterranei]
          Length = 598

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 34/206 (16%), Positives = 68/206 (33%), Gaps = 17/206 (8%)

Query: 69  QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLI 124
           QA+L+   + +      A     DK+ ++ +    G P+ P     +      +      
Sbjct: 104 QAVLD-AGLTWIGPSPQAIRDLGDKVTARHIAMRAGAPLVPGTKEPVKDASEIVAFADEH 162

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPL----DLLQSSSWNHGDQLLIEQYVD-GIELTC 179
             P  IK   GG   G+ V +  + IP        ++ +     +  +E+Y+D    +  
Sbjct: 163 GLPVAIKTAFGGGGRGLKVARTREEIPELFESATREAVAAFGRGECFVERYLDKPRHVKA 222

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAI 238
            V+ D       +           L+          PA  +  +  K +   A    +  
Sbjct: 223 QVLADMHGTAIVVGT-----RDCSLQRRHQKLVEEAPAPFLNDEQRKRIHESAKAICKEA 277

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINV 264
           G  G    ++L       + +LE+N 
Sbjct: 278 GYYGAGTVEYLV-ATDGTISFLEVNT 302


>gi|56460088|ref|YP_155369.1| carbamoyl phosphate synthase large subunit [Idiomarina loihiensis
           L2TR]
 gi|56179098|gb|AAV81820.1| Carbamoylphosphate synthase large subunit [Idiomarina loihiensis
           L2TR]
          Length = 1074

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 42/278 (15%), Positives = 100/278 (35%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D +              V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVEKIIERERPDAVLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      +LE  ++    +   A   + ++ R  + + + G+    + +
Sbjct: 89  TMGGQTALNCALDLDRHGVLERYKVEMIGANADAIDKAENRDRFDKAMKAIGLETPNAEM 148

Query: 113 VNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +      D    +  P +I+P       G  +    +       +    +  ++LLI++
Sbjct: 149 AHSLDEAFDVLSRLGFPCIIRPSFTMGGSGGGIAYNREEFEEICRRGLDLSPTNELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D S +   +   ++    ++       +S  V PA+ +    ++ +
Sbjct: 209 SLLGWKEYEMEVVRDKSDNCIIVCTIEN----FDPMGIHTGDSITVAPAQTLTDKEFQLM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  A    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RDAAMAVLREIGVETGGSNVQFGVNPDTGRMVIIEMNP 302



 Score = 60.9 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/196 (13%), Positives = 73/196 (37%), Gaps = 8/196 (4%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF--TMDSQHLISPPYV 129
           LE   +P   +   A   + D+ R +  V   G+    +  V  F   +     I  P V
Sbjct: 653 LEANGVPIIGTSPDAIDRAEDRARFQTAVRRLGLKQPENSTVTGFNEALTEAKRIGYPLV 712

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLD 188
           ++P        + ++  +  +   L  +   ++   +L+++++D  IE+    + D +  
Sbjct: 713 VRPSYVLGGRAMEIVYDEADLQRYLTDAVKVSNDAPVLLDRFLDNAIEVDVDAICDGTDV 772

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           +    +   +       +S  ++  + P  +   I  +++         +   G+  + F
Sbjct: 773 LIGGIMQHIEEAGV---HSGDSACSLPPYSLSDIIQAQLREQMRKLAFELNVNGLMNAQF 829

Query: 249 LFDPLSRKVFWLEINV 264
                  +++ +E+N 
Sbjct: 830 AVKE--DEIYLIEVNP 843


>gi|326692767|ref|ZP_08229772.1| carbamoyl-phosphate synthase large subunit [Leuconostoc argentinum
           KCTC 3773]
          Length = 1059

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 50/287 (17%), Positives = 99/287 (34%), Gaps = 35/287 (12%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKV----------------------SQIDVDRSVGL 44
           G ++E + S   G   A +L++ G++V                        I +D  +  
Sbjct: 21  GQAAEFDYS---GTQAALSLKEEGYQVILVNSNPATIMTDAEIADKVYVEPISIDF-IER 76

Query: 45  VLAHLKPDLAFNVLHGNFG----EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           +L   +PD     L G  G    +D     IL+ L I    + + A   + D+   K ++
Sbjct: 77  ILRKERPDAILPTLGGQTGLNMAKDLSEAGILDDLHIELLGTKLTAIEEAEDREAFKDLM 136

Query: 101 SSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS 158
                P+  S +       +        P +++P       G  +      +        
Sbjct: 137 ERLNEPIPESTIATTLEQALAFADTHGYPVIVRPAYTLGGTGGGIATTHDELVEIAANGL 196

Query: 159 SWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
             +   Q+LIE+ + G  E+   VM DAS +   + V   + +     ++  +       
Sbjct: 197 ELSPVTQVLIERSIAGYKEIEFEVMRDASDNA--LVVASMENFDPVGIHTGDSIVTAPVQ 254

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +     + ++  A    +A+   G        DP S K + +E+N 
Sbjct: 255 TLSDREVQMMRDSALKIIRALKIEGGVNIQMALDPKSYKYYIIEVNP 301



 Score = 67.5 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/199 (15%), Positives = 71/199 (35%), Gaps = 10/199 (5%)

Query: 69  QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISP 126
           Q + E   +    + +     + D+    QV+    +P             + +   I  
Sbjct: 644 QPLFEN-GVHILGTTVEDLNRAEDREAFDQVIKQLQLPQPIGKTATTVAEALAAAQEIGY 702

Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186
           P +I+P        + ++  D  +   + ++   ++   +LI+ Y+ G E    V+ D  
Sbjct: 703 PVLIRPSYVLGGRAMEIVSSDDELQDYMQRAVKVSNDHPVLIDSYLVGQEAEVDVLSDGE 762

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISR 245
             V    +   +           +S  V P + +   +  E+ + A    +A+G  G+  
Sbjct: 763 TAVIPGIMEHIERAGVHS----GDSMSVYPPQYLSQKVQDEMTQAAINLAKAMGTIGLMN 818

Query: 246 SDFLFDPLSRKVFWLEINV 264
             F+    +   + +E+N 
Sbjct: 819 VQFVIHEDTA--YVIEVNP 835


>gi|332163154|ref|YP_004299731.1| acetyl-CoA carboxylase biotin carboxylase subunit [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
 gi|318603962|emb|CBY25460.1| biotin carboxylase of acetyl-CoA carboxylase [Yersinia
           enterocolitica subsp. palearctica Y11]
 gi|325667384|gb|ADZ44028.1| acetyl-CoA carboxylase biotin carboxylase subunit [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
 gi|330862845|emb|CBX72986.1| biotin carboxylase [Yersinia enterocolitica W22703]
          Length = 449

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 82/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         L  DK+ +   +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAEQVERSGFIFIGPRAETIRLMGDKVSAINAMKKAGVPCVPGSDG 136

Query: 112 LVNRFTM---DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
            ++  T         I  P +IK   GG   G+ V++ D+ +   +     ++ +  + D
Sbjct: 137 PLDDDTAKNKAFAKRIGYPVIIKASGGGGGRGMRVVRHDKDLEQSINMTRAEAKAAFNND 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+Y++    +   V+ D   +   +A           K          PA  I  +
Sbjct: 197 MVYMEKYLENPRHIEIQVLADGQGNAIYLAERDCSMQRRHQK-----VVEEAPAPGITSE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + + +      A   IG RG    +FL+   + + +++E+N 
Sbjct: 252 MRRHIGERCAKACVEIGYRGAGTFEFLY--ENGEFYFIEMNT 291


>gi|283458567|ref|YP_003363200.1| acetyl/propionyl-CoA carboxylase subunit alpha [Rothia mucilaginosa
           DY-18]
 gi|283134615|dbj|BAI65380.1| acetyl/propionyl-CoA carboxylase, alpha subunit [Rothia
           mucilaginosa DY-18]
          Length = 606

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 33/220 (15%), Positives = 72/220 (32%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+           + +      +     DK+ ++ +    G P+ P    
Sbjct: 98  AVHPGYGFLSENAQFAQKCIDAGLTWIGPSPQSITRLGDKVAARHIAQKVGAPLVPGTKD 157

Query: 114 NRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGDQ 165
              + D           P  +K   GG   GI V +  +SI       + ++++     +
Sbjct: 158 PVKSADEVVAFADEHGLPIAVKAAFGGGGRGIKVARDRESIVEMYESAVREATAAFGRGE 217

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             IE+++D    +    + DA  +V  ++           K             +  +  
Sbjct: 218 CFIERFLDSPRHVETQCLADAHGNVVVVSTRDCSLQRRNQK----LVEEAPAPYLSEEQT 273

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K +   +    +  G +G    +FL       + +LE+N 
Sbjct: 274 KRLYEASRAILREAGYQGAGTCEFLV-GTDGTISFLEVNT 312


>gi|91201061|emb|CAJ74119.1| hypothetical protein kuste3358 [Candidatus Kuenenia
           stuttgartiensis]
          Length = 383

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 51/266 (19%), Positives = 102/266 (38%), Gaps = 38/266 (14%)

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAIL----------ELLEIPYTHSGILASALS 90
            +   L   K D+ F +       +   Q +L          +   +P+       +   
Sbjct: 60  DLEAELKAGKYDVIFPM-------EFSTQVLLTEVANRQMIEKYTRLPFA--DADLAKKG 110

Query: 91  MDKMRSKQVVSSCGVPVCPSILVNRFTMDS--QHLISPPYVIKPLKGGSSLGIIVIKKDQ 148
            DK    Q     G+ V  + +VN     +      + P +IKP     S GI+ +K+ +
Sbjct: 111 NDKAFIMQYARKRGIDVPTTYMVNDIEQLAVIAKETAYPVLIKPRNSSGSRGIVYVKEKE 170

Query: 149 SIPLDLLQSSSWNHGDQLLIEQYVDGIELT-CGVMGDASLDVTEIAVPKSDFYSYELKYS 207
            + L L       +   ++ E   DG ++   G++ +     +EI        S+  K  
Sbjct: 171 EL-LTLYLKVHKEYPFPIIQEYIPDGGDVYGVGLLFNFQ---SEIRA------SFVYKRL 220

Query: 208 SLNSTHVLPAKIPLDI-YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
             +     P+ +   +  ++++ +A L  +++   G++  +F  DP  RK   LE+N  P
Sbjct: 221 RSHPVSGGPSTLRESVKREDIREIAGLFMKSLRWTGVAHVEFKIDPRDRKPKLLEVN--P 278

Query: 267 GMTPVSIFPEMAAYAGYSFRELLLWM 292
                S+  ++A  +G  F  LL  +
Sbjct: 279 RF-WGSL--QLAVESGIDFPFLLFRL 301


>gi|23098885|ref|NP_692351.1| pyruvate carboxylase [Oceanobacillus iheyensis HTE831]
 gi|22777112|dbj|BAC13386.1| pyruvate carboxylase [Oceanobacillus iheyensis HTE831]
          Length = 1147

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 30/221 (13%), Positives = 82/221 (37%), Gaps = 20/221 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+       E   I +        ++  DK+++++   +  +P+ P    
Sbjct: 83  AIHPGYGFLSENIQFARRCEEEGIIFIGPTSKHLSMFGDKVKAREQAVAANLPIIPGSDG 142

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
            +       D       P +IK   GG   G+ V+K D  +         ++ +    D+
Sbjct: 143 PVSSLEEVQDFTQEHGYPIIIKASLGGGGRGMRVVKDDSELESAYDRAKSEAKAAFGNDE 202

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDI 223
           + +E+ ++    +   ++GD + ++  +           ++        + P+  +   +
Sbjct: 203 IYVERLIENPKHIEVQILGDNAGNIVHLYE-----RDCSVQRRHQKLIEIAPSLSLGDKL 257

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +++ + A    + +        +FL      + F++E+N 
Sbjct: 258 REDICQSAVNLMKNVDYLNAGTVEFLVT--DDEFFFIEVNP 296


>gi|317141542|ref|XP_003189380.1| hypothetical protein AOR_1_202164 [Aspergillus oryzae RIB40]
          Length = 348

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 43/234 (18%), Positives = 80/234 (34%), Gaps = 47/234 (20%)

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCP--SILVNRFTMDS--QHLISPPYVIKPLKG 135
                       DK      + + G    P   ++ +   +D     + S P V KP++G
Sbjct: 138 VGQPPGLVENCDDKAFLNDKLRALGGYTLPRSWLVTDSHNLDEFVGSMKSFPVVGKPVRG 197

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195
             S G+ +      +   +   +       +++E+Y+ G E T  VM          +  
Sbjct: 198 RGSHGVKLCHSPAQLKQHI--EALLGESPLIMVEEYLSGEEATITVM--------PPSPE 247

Query: 196 KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255
           +S+ ++Y                    + +E Q +A    + IG     R D        
Sbjct: 248 RSEHWTY------------------GKVMEECQGVA----KLIGATAPIRIDVRRFREGS 285

Query: 256 KVFWLEINVQPGMT---------PVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           +    +IN++P MT           S+    AA  G+ +  LL  ++  AS  R
Sbjct: 286 EFALFDINMKPNMTGPGRPGREDQASLTAMAAAAIGWDYGTLLQKIL--ASAQR 337


>gi|226362533|ref|YP_002780311.1| acyl-CoA carboxylase alpha chain [Rhodococcus opacus B4]
 gi|226241018|dbj|BAH51366.1| acyl-CoA carboxylase alpha chain [Rhodococcus opacus B4]
          Length = 596

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 31/222 (13%), Positives = 71/222 (31%), Gaps = 20/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+      +E   + +      A  +   K+ ++ + +   VP  P    
Sbjct: 77  AVHPGYGFLAENAAFAKAVEDAGLIFIGPPSSAIEVMGSKIAARDLAAKADVPQVPGSQG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-----SSSWNHGD 164
            I      +        P  IK   GG   G+  +                 ++++   D
Sbjct: 137 TIASAADVIAFGDEYGYPVAIKATYGGGGRGMRTVASAAEAESAFASAKQESAAAFGRDD 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+Y+     +   V  D   +   I           ++          PA  +  +
Sbjct: 197 -VYLERYLSSARHVEVQVFADTHGNAVWI-----GDRDCSVQRRHQKLIEEAPAPGLSDE 250

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + + +   +    + +G  G    +FL +      ++LE+N 
Sbjct: 251 LRRAMGEASVRLAKQVGYVGAGTVEFLVEADREAFYFLEMNT 292


>gi|149178634|ref|ZP_01857220.1| biotin carboxylase [Planctomyces maris DSM 8797]
 gi|148842560|gb|EDL56937.1| biotin carboxylase [Planctomyces maris DSM 8797]
          Length = 445

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 38/219 (17%), Positives = 79/219 (36%), Gaps = 17/219 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     +     I +      A A   DK+ ++++  +  V V P    
Sbjct: 77  AIHPGYGFLAENAHFAEVCRSCNIEFIGPPHEAMAQLGDKVSAREIAKAANVHVSPGTEG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
            +      +     I  P +IK   GG   G+ V + D S+   L  +++          
Sbjct: 137 LVTDEAEALKVAQEIGYPVLIKATAGGGGKGMRVARNDISLKAGLKAAAAEAEAAFKNSG 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+Y++    +   +M D   +V  +            K             +P  + 
Sbjct: 197 VYIEKYIENPRHVEVQIMADNHGNVLHLWERDCSLQRRHQK----LVEESPAPNLPHSVR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
           +++ + A    +A G       +FL  P   + +++E+N
Sbjct: 253 EDICKAACRLIEAAGYTNAGTVEFLVGP-DNQFYFIEVN 290


>gi|146329352|ref|YP_001209335.1| acetyl-CoA carboxylase, biotin carboxylase [Dichelobacter nodosus
           VCS1703A]
 gi|146232822|gb|ABQ13800.1| acetyl-CoA carboxylase, biotin carboxylase [Dichelobacter nodosus
           VCS1703A]
          Length = 447

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 81/221 (36%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+      +      +         +  DK+ + + + + G+P  P    
Sbjct: 77  AIHPGYGFLSENADFAERVSQSGFVFIGPRPDTIRMMGDKVEAIKAMKAAGIPCVPGSGG 136

Query: 111 ILVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGD 164
            L N     +   H I  P +IK   GG   G+ V+ KD  +   +     ++      D
Sbjct: 137 ALGNDAEKILAMAHQIGYPVIIKAAGGGGGRGMRVVHKDAELIDAVKLTKTEAKQAFGND 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            + +E+Y++    +   V+ D+  +   +A           K            +I    
Sbjct: 197 MVYMEKYLEKPRHVEIQVLADSHGNAIHLAERDCSLQRRHQK----VMEEAPAPQITAKQ 252

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + + ++   A + IG  G    +FL+   + + +++E+N 
Sbjct: 253 REIIGKICTDACKRIGYLGAGTFEFLY--ENGQFYFIEMNT 291


>gi|90022373|ref|YP_528200.1| carbamoyl phosphate synthase large subunit [Saccharophagus
           degradans 2-40]
 gi|89951973|gb|ABD81988.1| carbamoyl-phosphate synthase large subunit [Saccharophagus
           degradans 2-40]
          Length = 1077

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 45/278 (16%), Positives = 98/278 (35%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D               +V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPSMADATYIEPITWETVAKIIEKERPDAVLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      +LE   +    +   A   + D+ R  Q +   G+    + +
Sbjct: 89  TMGGQTALNCALALHKHGVLEEFGVELIGATEDAIDKAEDRNRFDQAMKKIGLECARAKI 148

Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           V+     +Q       P +I+P       G  +    +       +    +  ++LLI++
Sbjct: 149 VHTMEEANQVPKEFGFPCIIRPSFTMGGSGGGIAYNWEEFEEICTRGLDLSPTNELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + +   I   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SLLGWKEYEMEVVRDKNDNCIIICSIEN----FDPMGVHTGDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P   ++  +E+N 
Sbjct: 265 RNASIAVLREIGVETGGSNVQFAVNPEDGRLVVIEMNP 302



 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 37/267 (13%), Positives = 98/267 (36%), Gaps = 29/267 (10%)

Query: 22  CASAL--EDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ- 69
             +AL   +AG++   +         D D S  L    +  +    ++H    +  +VQ 
Sbjct: 582 VHAALASREAGYEAIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVHREKPKGVIVQF 641

Query: 70  ---------AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTM 118
                      LE   +P   +   A   + D+ R +Q++    +   P+ +V      +
Sbjct: 642 GGQTPLKLANALEAEGVPIIGTSPEAIDRAEDRERFQQMIQRLELLQPPNAIVRSTEEAI 701

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIEL 177
                +  P V++P        + ++  +  +   + ++   +    +L++ ++ + IE+
Sbjct: 702 HIAPTVGYPLVVRPSYVLGGRAMEIVYTENELRTYMREAVQASEDSPVLLDHFLNNAIEV 761

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
               + D    V    +   +       +S  ++  + P  +P D+  E++       + 
Sbjct: 762 DIDAVSDGERVVIGGIMQHIEQCGV---HSGDSACSLPPYSLPEDVQDEMREQVRKMARE 818

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINV 264
           +G  G+   +        +++ +E+N 
Sbjct: 819 LGVIGL--MNVQLAYQDGRIYVIEVNP 843


>gi|88608321|ref|YP_506687.1| propionyl-CoA carboxylase, alpha subunit [Neorickettsia sennetsu
           str. Miyayama]
 gi|88600490|gb|ABD45958.1| propionyl-CoA carboxylase, alpha subunit [Neorickettsia sennetsu
           str. Miyayama]
          Length = 652

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 30/233 (12%), Positives = 83/233 (35%), Gaps = 15/233 (6%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
            S+   +     D      +G   E+      +E     +        ++  DK+ +K++
Sbjct: 65  ESILTAVKKSGADAVHPG-YGFLSENPSFARSVEQAGFTFIGPSSECISMMSDKVMAKKI 123

Query: 100 VSSCGVPVCPSILVNRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSI----P 151
                + + P  L      +        I  P +IK   GG   G+ ++ +++ +     
Sbjct: 124 AQEASINLVPGYLGEISDYEQAVSIAKEIGFPVLIKAAAGGGGKGMRLVNREEELREAMQ 183

Query: 152 LDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLN 210
           L   ++ ++   +++ IE+Y+     +   ++ D +  V  +   +        K     
Sbjct: 184 LACHEALNFFADERIFIEKYITNPRHIEIQLIADKNGHVICLGERECSVQRRHQK----V 239

Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
                   +   + +++   +    +A G   +   +++ D   R  +++E+N
Sbjct: 240 VEEAPSLALDRGLREKMYEQSIRLARAAGYTSVGTVEYILD-QERNFYFMEMN 291


>gi|149190314|ref|ZP_01868587.1| carbamoyl-phosphate synthase large subunit [Vibrio shilonii AK1]
 gi|148835803|gb|EDL52767.1| carbamoyl-phosphate synthase large subunit [Vibrio shilonii AK1]
          Length = 1074

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 47/278 (16%), Positives = 97/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D D              V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPDMADATYIEPIQWEVVRNIIAKERPDAVLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV--PVCPS 110
            + G    +  +      +LE   +    +   A   + D+ R  + + S G+  P   +
Sbjct: 89  TMGGQTALNCALDLEKHGVLEEFGVEMIGATADAIDKAEDRSRFDKAMKSIGLECPRADT 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                       ++  P +I+P       G  +    +       +    +  ++LLI++
Sbjct: 149 AKTMEEAYAVLDMVGFPCIIRPSFTMGGTGGGIAYNKEEFEEICRRGLDLSPTNELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + + +   A+   D           +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKADNCIIVCAIENFDPMGIHT----GDSITVAPAQTLTDKEYQLM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P   ++  +E+N 
Sbjct: 265 RNASLAVLREIGVETGGSNVQFGINPKDGRMVIIEMNP 302



 Score = 62.1 bits (150), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 34/197 (17%), Positives = 76/197 (38%), Gaps = 10/197 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH--LISPPYV 129
           LE   +P   +   A   + D+ R +  V   G+    +  V       +    I  P V
Sbjct: 653 LEAAGVPIIGTSPDAIDRAEDRERFQVAVDRLGLLQPENATVTTMEQAVEKSREIGFPLV 712

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  +Q +     ++ S ++   +L++ ++ D +E+    + D    
Sbjct: 713 VRPSYVLGGRAMEIVYDEQDLRRYFNEAVSVSNESPVLLDSFLDDAVEVDIDALCDGERV 772

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           V    +   +    +    S +S   LPA  +  +I   ++         +G RG+  + 
Sbjct: 773 VIGGIMEHIE----QAGVHSGDSACSLPAYTLSQEIQDTMREQVEKLAFELGVRGLMNTQ 828

Query: 248 FLFDPLSRKVFWLEINV 264
           F     + KV+ +E+N 
Sbjct: 829 FAV--KNNKVYLIEVNP 843


>gi|197118283|ref|YP_002138710.1| carbamoyl-phosphate synthase large subunit lipoprotein [Geobacter
           bemidjiensis Bem]
 gi|197087643|gb|ACH38914.1| carbamoyl-phosphate synthase, large subunit lipoprotein,
           glutamine-dependent [Geobacter bemidjiensis Bem]
          Length = 1082

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 51/278 (18%), Positives = 104/278 (37%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVDRS------------VGLVLAHLKPDLAFN 56
           SG     AL++ GF+V  +         D D +            +  ++   +PD    
Sbjct: 29  SGTQACKALKEEGFEVVLLNSNPATIMTDPDFADFTYIEPVTPEILAAIIEKERPDALLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G    +  V       LE   +    + + A   + D+   K+ +   G+ V  S L
Sbjct: 89  TLGGQTALNTAVAVAENGTLEKFGVELIGAKLPAIKKAEDRTLFKEAMVRIGLDVPRSGL 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +  +  M+    +  P +I+P       G  +    +      +     +  D++L+E+
Sbjct: 149 AHNYQEAMEVIKFVGFPAIIRPSFTLGGTGGGIAYNMEEYERMSMAGIEASPTDEILVEE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            + G  E    VM D + +V  I   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYELEVMRDTADNVVIICSIEN----FDAMGVHTGDSITVAPAQTLTDKEYQIL 264

Query: 228 QRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RDASLKIIREIGVDTGGSNIQFGTNPKNGRLIVIEMNP 302



 Score = 64.4 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 39/262 (14%), Positives = 94/262 (35%), Gaps = 27/262 (10%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH-----GNFGEDG---- 66
           AL + G++   +         D D S  L    L  +   N++      G   + G    
Sbjct: 598 ALSEDGYETIMVNCNPETVSTDYDTSDRLYFEPLTFEDVLNIVDVEKPTGVIVQFGGQTP 657

Query: 67  -LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--QHL 123
             +   LE   +P   +   A   + D+ R ++++    +    +     F         
Sbjct: 658 LKLAVALEKAGVPIIGTSPDAIDRAEDRERFQEMLQKLKLRQPENGTARSFEESEVVAER 717

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVM 182
           I  P V++P        + ++    ++   +  +   +    +LI++++D  IE+    +
Sbjct: 718 IGYPVVVRPSYVLGGRAMEIVYDVDNLRRYMHTAVQASPEHPILIDKFLDEAIEIDVDAL 777

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D  + V    +   +       +S  ++  + P  I  +I +E++R   +    +  +G
Sbjct: 778 CDGQVAVIGGIMEHIEEAGI---HSGDSACSLPPYSISKEIVEEIRRQTKMMALELNVKG 834

Query: 243 ISRSDFLFDPLSRKVFWLEINV 264
           +    F        ++ +E+N 
Sbjct: 835 LMNVQFAV--KGNDIYIIEVNP 854


>gi|315453559|ref|YP_004073829.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Helicobacter
           felis ATCC 49179]
 gi|315132611|emb|CBY83239.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Helicobacter
           felis ATCC 49179]
          Length = 453

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 48/264 (18%), Positives = 99/264 (37%), Gaps = 32/264 (12%)

Query: 21  ACASALEDAGFKV-------SQIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQA 70
             AS L D  ++V       S +++D+ + +     + D     +H  +G   E+    A
Sbjct: 45  NLASQLADETYRVGENLAHKSYLNIDKVLEIA-KQAQVD----AIHPGYGFLSENPKFAA 99

Query: 71  ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF---TMDSQHLISPP 127
            +E   I +            DK ++ +      VP+ PS  V       ++    I  P
Sbjct: 100 RVEEAGIIFVGPSSALIETMGDKAKALEQARKSQVPIMPSSPVLDSVDMALEIASKIGYP 159

Query: 128 YVIKPLKGGSSLGIIVIKKDQSIPLDLLQS-----SSWNHGDQLLIEQYV-DGIELTCGV 181
            +IK + GG   GI  +K +  +      +     +++ +G  + +E+Y+ +   +   +
Sbjct: 160 LLIKAVAGGGGKGIRFVKDEADLRSQFDIATSEARAAFGNGG-VYLEKYLQNAKHIEVQI 218

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGC 240
           +GD         V         L+          P   +     + +   A      +G 
Sbjct: 219 LGDGE------RVIHLFDRECSLQRRRQKVLEEAPSPSLDAQTRQALCTGAARMAADVGY 272

Query: 241 RGISRSDFLFDPLSRKVFWLEINV 264
           +G    +FL+D  S++ ++LE+N 
Sbjct: 273 KGAGTLEFLYDTNSKEFYFLEMNT 296


>gi|254804321|ref|YP_003082542.1| carbamoyl-phosphate synthase large chain [Neisseria meningitidis
           alpha14]
 gi|254667863|emb|CBA03922.1| carbamoyl-phosphate synthase large chain [Neisseria meningitidis
           alpha14]
          Length = 1071

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 28/192 (14%), Positives = 72/192 (37%), Gaps = 8/192 (4%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYVIKPL 133
            +    +   +   + D+ R ++V++  G+   P+ + +           I  P V++P 
Sbjct: 652 GVNIIGTSADSIDAAEDRERFQKVLNDLGLRQPPNRIAHNEEEALVKAEEIGYPLVVRPS 711

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEI 192
                  + ++   + +   + ++   +    +L++ ++ + IE+    + D    V   
Sbjct: 712 YVLGGRAMQIVHSAEQLQKYMREAVQVSEDSPVLLDFFLNNAIEIDVDCVSDGKDVVIGG 771

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            +   +       +S  +   + P  +  +I  E++R       A+G  G+    F    
Sbjct: 772 IMQHVEQAGI---HSGDSGCSLPPYSLSEEIQDEIRRQTKAMAYALGVVGLMNVQFAV-- 826

Query: 253 LSRKVFWLEINV 264
               VF LE+N 
Sbjct: 827 QDGVVFVLEVNP 838



 Score = 66.3 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 50/278 (17%), Positives = 101/278 (36%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +              DV        ++V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYKVILVNSNPATIMTDPEMADVTYIEPIMWQTVEKIIAKERPDAILP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      +L    +    +   A   + D+ R K+ +   G+    S +
Sbjct: 89  TMGGQTALNCALDLARNGVLAKYNVELIGATEDAIDKAEDRGRFKEAMEKIGLSCPKSFV 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     + +Q  +  P +I+P       G  +            +    +   +LLIEQ
Sbjct: 149 CHTMNEALAAQEQVGFPTLIRPSFTMGGSGGGIAYNKDEFLAICERGFDASPTHELLIEQ 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            V G  E    V+ D + +   I   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SVLGWKEYEMEVVRDKNDNCIIICSIEN----FDPMGVHTGDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RNASLAVLREIGVDTGGSNVQFAVNPENGEMIVIEMNP 302


>gi|254504999|ref|ZP_05117150.1| RimK-like ATP-grasp domain family [Labrenzia alexandrii DFL-11]
 gi|222441070|gb|EEE47749.1| RimK-like ATP-grasp domain family [Labrenzia alexandrii DFL-11]
          Length = 670

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 72/221 (32%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H  +G   E       L    I +      A     DK+ SK+  ++  V   P  L 
Sbjct: 77  AVHPGYGFLSERASFPEALAKEGIVWIGPNPRAIEAMGDKIESKKFANAANVSTVPGYLG 136

Query: 113 ---VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGD 164
                   ++    I  P +IK   GG   G+ +      +           +SS+   D
Sbjct: 137 VIESPDQAVEIAADIGYPVMIKASAGGGGKGMRIAWNADEVRDGYTRSKSEAASSFG-DD 195

Query: 165 QLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           ++ IE+++ +   +   V+GD   +   +   +        K             +  D 
Sbjct: 196 RVFIEKFIQNPRHIEIQVLGDKHGNAIYLGERECSIQRRNQK----VIEEAPSPLLDEDT 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +   A    +A+        +F      +  F+LE+N 
Sbjct: 252 RRLMGEQAVALAKAVDYDSAGTVEF-VAGQDKSFFFLEMNT 291


>gi|149915879|ref|ZP_01904403.1| carbamoyl-phosphate synthase large subunit [Roseobacter sp.
           AzwK-3b]
 gi|149810202|gb|EDM70048.1| carbamoyl-phosphate synthase large subunit [Roseobacter sp.
           AzwK-3b]
          Length = 1092

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 43/268 (16%), Positives = 94/268 (35%), Gaps = 35/268 (13%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAI---- 71
           AL D G++   I         D D S  L    L  +    +L     E+G +  +    
Sbjct: 580 ALSDTGYETIMINCNPETVSTDYDTSDRLYFEPLTFEHVMEILRVEL-ENGTLHGVIVQF 638

Query: 72  -----------LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTM 118
                      LE   IP   +   A  L+ D+ R + +V+  G+    + +   ++  +
Sbjct: 639 GGQTPLKLAKALEAEGIPILGTSPDAIDLAEDRERFQALVNQLGLKQPKNGIASTDKQAL 698

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IEL 177
                I  P VI+P        + +++    +   + ++   +    +L++ Y+ G IE 
Sbjct: 699 AIADEIGFPLVIRPSYVLGGRAMEIVRDMAHLERYIAEAVVVSGDSPVLLDGYLSGAIEC 758

Query: 178 TC-GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
               +    ++ V  I             +S  ++  + P  +  +   E++       +
Sbjct: 759 DVDALCDGETVHVAGI----MQHIEEAGVHSGDSACSLPPYSLRPETIAEIKTQTEALAR 814

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINV 264
           A+   G+    F        ++ +E+N 
Sbjct: 815 ALNVVGLMNVQFAV--KGDDIYLIEVNP 840



 Score = 59.8 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 46/278 (16%), Positives = 95/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D                V  ++   +PD    
Sbjct: 19  SGAQACKALREEGYRVILVNSNPATIMTDPGLADATYIEPITPEIVAKIIEKERPDALLP 78

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G  G +  +      IL+   +    +   A  ++ D+   ++ +   G+    + +
Sbjct: 79  TMGGQTGLNTALAVADMGILDKYGVELIGANRQAIEMAEDRKLFREAMDRLGIENPAATI 138

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            N     M +   +  P +I+P       G  V                 +   Q+LI++
Sbjct: 139 ANTLDEAMAALDTVGLPAIIRPAYTLGGTGGGVAYNRDDYERICKSGLDASPVSQILIDE 198

Query: 171 YVDG-IELTCGVMGDASL-DVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEV 227
            + G  E    V+ D +   +   A+   D           +S  V PA  +    Y+ +
Sbjct: 199 SLLGWKEFEMEVVRDKADNAIIVCAIENVDPMGVHT----GDSITVAPALTLTDKEYQIM 254

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           + L+    + IG   G S   +  +P + ++  +E+N 
Sbjct: 255 RNLSIAVLREIGVETGGSNVQWAINPENGRMVVIEMNP 292


>gi|22124129|ref|NP_667552.1| acetyl-CoA carboxylase biotin carboxylase subunit [Yersinia pestis
           KIM 10]
 gi|45443617|ref|NP_995156.1| acetyl-CoA carboxylase biotin carboxylase subunit [Yersinia pestis
           biovar Microtus str. 91001]
 gi|51597863|ref|YP_072054.1| acetyl-CoA carboxylase biotin carboxylase subunit [Yersinia
           pseudotuberculosis IP 32953]
 gi|108809662|ref|YP_653578.1| acetyl-CoA carboxylase biotin carboxylase subunit [Yersinia pestis
           Antiqua]
 gi|108813673|ref|YP_649440.1| acetyl-CoA carboxylase biotin carboxylase subunit [Yersinia pestis
           Nepal516]
 gi|145597581|ref|YP_001161657.1| acetyl-CoA carboxylase biotin carboxylase subunit [Yersinia pestis
           Pestoides F]
 gi|153997403|ref|ZP_02022503.1| biotin carboxylase [Yersinia pestis CA88-4125]
 gi|162421903|ref|YP_001605746.1| acetyl-CoA carboxylase biotin carboxylase subunit [Yersinia pestis
           Angola]
 gi|165927539|ref|ZP_02223371.1| acetyl-CoA carboxylase, biotin carboxylase [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165937470|ref|ZP_02226033.1| acetyl-CoA carboxylase, biotin carboxylase [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166011300|ref|ZP_02232198.1| acetyl-CoA carboxylase, biotin carboxylase [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166214193|ref|ZP_02240228.1| acetyl-CoA carboxylase, biotin carboxylase [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|167402018|ref|ZP_02307501.1| acetyl-CoA carboxylase, biotin carboxylase [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167420593|ref|ZP_02312346.1| acetyl-CoA carboxylase, biotin carboxylase [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167425426|ref|ZP_02317179.1| acetyl-CoA carboxylase, biotin carboxylase [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|167470303|ref|ZP_02335007.1| acetyl-CoA carboxylase, biotin carboxylase [Yersinia pestis FV-1]
 gi|170022709|ref|YP_001719214.1| acetyl-CoA carboxylase biotin carboxylase subunit [Yersinia
           pseudotuberculosis YPIII]
 gi|186897057|ref|YP_001874169.1| acetyl-CoA carboxylase biotin carboxylase subunit [Yersinia
           pseudotuberculosis PB1/+]
 gi|218930669|ref|YP_002348544.1| acetyl-CoA carboxylase biotin carboxylase subunit [Yersinia pestis
           CO92]
 gi|229836805|ref|ZP_04456970.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Yersinia pestis
           Pestoides A]
 gi|229839296|ref|ZP_04459455.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Yersinia pestis
           biovar Orientalis str. PEXU2]
 gi|229899858|ref|ZP_04514999.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Yersinia pestis
           biovar Orientalis str. India 195]
 gi|229904169|ref|ZP_04519280.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Yersinia pestis
           Nepal516]
 gi|270488612|ref|ZP_06205686.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Yersinia pestis
           KIM D27]
 gi|294505251|ref|YP_003569313.1| acetyl-CoA carboxylase [Yersinia pestis Z176003]
 gi|21956883|gb|AAM83803.1|AE013621_3 acetyl CoA carboxylase, biotin carboxylase subunit [Yersinia pestis
           KIM 10]
 gi|45438487|gb|AAS64033.1| biotin carboxylase [Yersinia pestis biovar Microtus str. 91001]
 gi|51591145|emb|CAH22810.1| biotin carboxylase [Yersinia pseudotuberculosis IP 32953]
 gi|108777321|gb|ABG19840.1| biotin carboxylase [Yersinia pestis Nepal516]
 gi|108781575|gb|ABG15633.1| biotin carboxylase [Yersinia pestis Antiqua]
 gi|115349280|emb|CAL22247.1| biotin carboxylase [Yersinia pestis CO92]
 gi|145209277|gb|ABP38684.1| biotin carboxylase [Yersinia pestis Pestoides F]
 gi|149289040|gb|EDM39120.1| biotin carboxylase [Yersinia pestis CA88-4125]
 gi|162354718|gb|ABX88666.1| acetyl-CoA carboxylase, biotin carboxylase [Yersinia pestis Angola]
 gi|165914575|gb|EDR33189.1| acetyl-CoA carboxylase, biotin carboxylase [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165920433|gb|EDR37710.1| acetyl-CoA carboxylase, biotin carboxylase [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165989684|gb|EDR41985.1| acetyl-CoA carboxylase, biotin carboxylase [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166204680|gb|EDR49160.1| acetyl-CoA carboxylase, biotin carboxylase [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|166961399|gb|EDR57420.1| acetyl-CoA carboxylase, biotin carboxylase [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167048604|gb|EDR60012.1| acetyl-CoA carboxylase, biotin carboxylase [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167055440|gb|EDR65233.1| acetyl-CoA carboxylase, biotin carboxylase [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|169749243|gb|ACA66761.1| acetyl-CoA carboxylase, biotin carboxylase [Yersinia
           pseudotuberculosis YPIII]
 gi|186700083|gb|ACC90712.1| acetyl-CoA carboxylase, biotin carboxylase [Yersinia
           pseudotuberculosis PB1/+]
 gi|229678287|gb|EEO74392.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Yersinia pestis
           Nepal516]
 gi|229687350|gb|EEO79425.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Yersinia pestis
           biovar Orientalis str. India 195]
 gi|229695662|gb|EEO85709.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Yersinia pestis
           biovar Orientalis str. PEXU2]
 gi|229705748|gb|EEO91757.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Yersinia pestis
           Pestoides A]
 gi|262363314|gb|ACY60035.1| acetyl-CoA carboxylase [Yersinia pestis D106004]
 gi|262367308|gb|ACY63865.1| acetyl-CoA carboxylase [Yersinia pestis D182038]
 gi|270337116|gb|EFA47893.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Yersinia pestis
           KIM D27]
 gi|294355710|gb|ADE66051.1| acetyl-CoA carboxylase [Yersinia pestis Z176003]
 gi|320017175|gb|ADW00747.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Yersinia pestis
           biovar Medievalis str. Harbin 35]
          Length = 449

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 39/222 (17%), Positives = 82/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         L  DK+ +   +   GVP  P    
Sbjct: 77  AVHPGYGFLSENADFAEQVERSGFIFIGPRAETIRLMGDKVSAISAMKKAGVPCVPGSDG 136

Query: 112 LVNRFT---MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
            ++  T         I  P +IK   GG   G+ V++ D+ +   +     ++ +  + D
Sbjct: 137 PLSDDTTKNKAFAKRIGYPVIIKASGGGGGRGMRVVRHDKDLEESINMTRAEAKAAFNND 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+Y++    +   ++ D   +   +A           K          PA  I  +
Sbjct: 197 MVYMEKYLENPRHIEVQILADGQGNAIYLAERDCSMQRRHQK-----VVEEAPAPGITSE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + + +      A   IG RG    +FL+   + + +++E+N 
Sbjct: 252 MRRYIGERCAKACMEIGYRGAGTFEFLY--ENGEFYFIEMNT 291


>gi|317163468|gb|ADV07009.1| carbamoyl phosphate synthase large subunit [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 1071

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 50/278 (17%), Positives = 101/278 (36%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +              DV        ++V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYKVILVNSNPATIMTDPEMADVTYIEPIMWQTVEKIIAKERPDAILP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      +L    +    +   A   + D+ R K+ +   G+    S +
Sbjct: 89  TMGGQTALNCALDLARNGMLAKYNVELIGATEDAIDKAEDRGRFKEAMEKIGLSCPKSFV 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     + +Q  +  P +I+P       G  +            +    +   +LLIEQ
Sbjct: 149 CHTMNEALAAQEQVGFPTLIRPSFTMGGSGGGIAYNKDEFLAICERGFDASPTHELLIEQ 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            V G  E    V+ D + +   I   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SVLGWKEYEMEVVRDKADNCIIICSIEN----FDPMGVHTGDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RNASLAVLREIGVDTGGSNVQFAVNPENGEMIVIEMNP 302



 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/192 (14%), Positives = 73/192 (38%), Gaps = 8/192 (4%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYVIKPL 133
            +    +   +   + D+ R ++V++  G+   P+ + +           I  P V++P 
Sbjct: 652 GVNIIGTSADSIDAAEDRERFQKVLNDLGLRQPPNRIAHNEEEALVKAEEIGYPLVVRPS 711

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEI 192
                  + ++   +++   + ++   +    +L++ ++ + IE+    + D    V   
Sbjct: 712 YVLGGRAMQIVHSAEALQKYMREAVQVSEDSPVLLDFFLNNAIEVDVDCVSDGKDVVIGG 771

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            +   +       +S  +   + P  +  +I  E++R       A+G  G+    F    
Sbjct: 772 IMQHVEQAGI---HSGDSGCSLPPYSLSEEIQDEIRRQTKAMAYALGVVGLMNVQFAV-- 826

Query: 253 LSRKVFWLEINV 264
               VF LE+N 
Sbjct: 827 QDGVVFVLEVNP 838


>gi|291005700|ref|ZP_06563673.1| acetyl-CoA carboxylase [Saccharopolyspora erythraea NRRL 2338]
          Length = 451

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 82/220 (37%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   ED     I +   I           +  DK R+++V+   G+P+ P  L 
Sbjct: 79  AIHPGYGFLSEDPYFAEICQQHGITLIGPPPGVMDVLGDKARTRRVMRDAGLPLLPGTLS 138

Query: 114 NRFTMDSQH----LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN----HGDQ 165
              +          I  P +IK   GG   GI V++  +S+P  L ++ +          
Sbjct: 139 PVASAGEAERIADEIGYPVIIKASAGGGGSGITVVRDRESLPSALAETRATAQTLFKDPS 198

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+Y+     +   V+ D+      +            K            ++  D+ 
Sbjct: 199 VYLEKYLSPAHHVEIQVVCDSHGGAVHLGERDCSVQRRNQK----LVEEAPSPRVGDDLR 254

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             + R A     A G +G+  ++FL D    + +++E+N 
Sbjct: 255 ARMGRAAVDGAVAAGYQGVGTAEFLLD-DDGEFWFMEVNP 293


>gi|322417680|ref|YP_004196903.1| phosphoribosylglycinamide formyltransferase 2 [Geobacter sp. M18]
 gi|320124067|gb|ADW11627.1| phosphoribosylglycinamide formyltransferase 2 [Geobacter sp. M18]
          Length = 392

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 33/185 (17%), Positives = 66/185 (35%), Gaps = 18/185 (9%)

Query: 97  KQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL-- 152
           +      G+P              ++   I  P V+KP+   S  G  V++    +    
Sbjct: 117 RLAAEELGLPTAAYRFATSMDEFREAVAAIGLPCVVKPIMSSSGKGQSVLRDAADMERCF 176

Query: 153 DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212
                 +    +++++EQ++   +    ++    +  T    P         +    +  
Sbjct: 177 RYAIEGARGASNKVIVEQFIP-FDYEITLLTVRHVGGTSFCPPIG------HRQIDGDYH 229

Query: 213 HVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP---GM 268
               P  +   +  E QR A     A+G RGI   +F       KV++ E++ +P   GM
Sbjct: 230 ESWQPTPMAPAVLAEAQRQAEAVTGALGGRGIFGCEFFVT--GDKVWFSEVSPRPHDTGM 287

Query: 269 -TPVS 272
            T +S
Sbjct: 288 VTMIS 292


>gi|227553521|ref|ZP_03983570.1| carbamoyl phosphate synthase large subunit [Enterococcus faecalis
           HH22]
 gi|227177348|gb|EEI58320.1| carbamoyl phosphate synthase large subunit [Enterococcus faecalis
           HH22]
          Length = 922

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/221 (11%), Positives = 71/221 (32%), Gaps = 13/221 (5%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--QHLISPPYVIKPL 133
            +    + I     + ++   +Q +    +P  P                I  P +++P 
Sbjct: 512 GVKILGTTIEDLDRAENRDLFEQALQELAIPQPPGDTATSAEEAVVIADRIGYPVLVRPS 571

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
                  + +++  + +   +  +   +    +L++ Y+ G E     + D    +    
Sbjct: 572 YVLGGRAMEIVENQKDLEDYMRHAVKASPEHPVLVDSYLLGQECEVDAICDGETVLIPGI 631

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
           +   +           +S  V P + +  +I   +          + C G+    F+   
Sbjct: 632 MEHIERAGVHS----GDSMAVYPPQYLSQEIQATIADYTKKLALGLNCVGMMNIQFVIHE 687

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
              +V+ +E+N +   T     P ++   G    ++    +
Sbjct: 688 --NRVYVIEVNPRASRT----VPFLSKITGIPMAQVATKAI 722



 Score = 50.1 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 32/190 (16%), Positives = 69/190 (36%), Gaps = 9/190 (4%)

Query: 106 PVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
           P+  S +VN     +     I  P +++P       G  +   ++ +          +  
Sbjct: 4   PIPESEIVNTVEQAVAFAKRIGYPIIVRPAFTLGGTGGGMCDTEEELRQIAENGLKLSPV 63

Query: 164 DQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD 222
            Q LIE+ + G  E+   VM D++ +   I V   + +     ++  +        +   
Sbjct: 64  TQCLIEKSIAGFKEIEYEVMRDSADNA--IVVCNMENFDPVGIHTGDSIVFAPSQTLSDY 121

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAG 282
            Y+ ++  +    +A+   G        DP S   + +E+N  P ++  S     +   G
Sbjct: 122 EYQMLRDASLKIIRALKIEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATG 177

Query: 283 YSFRELLLWM 292
           Y   +L   +
Sbjct: 178 YPIAKLAAKI 187


>gi|146302932|ref|YP_001190248.1| carbamoyl-phosphate synthase L chain, ATP-binding [Metallosphaera
           sedula DSM 5348]
 gi|27462759|gb|AAO15572.1|AF461116_1 biotin carboxylase [Metallosphaera sedula]
 gi|145701182|gb|ABP94324.1| biotin carboxylase [Metallosphaera sedula DSM 5348]
          Length = 510

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 35/222 (15%), Positives = 75/222 (33%), Gaps = 22/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+      +E   + Y            DK+  K++    GVP+ P    
Sbjct: 79  AVHPGYGFLSENADFVEAVEKAGMTYIGPSAEVMRKIKDKLDGKRIAQLSGVPIAPGSDG 138

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS-----SWNHGD 164
            +      +     I  P ++K   GG  +GI  I     +     ++      ++   D
Sbjct: 139 PVESIDEALKLAEKIGYPIMVKAASGGGGVGITKIDTPDQLIDAWERNKRLATQAFGRSD 198

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             + +  V+   +   ++GD   +       +             N   +  A  P    
Sbjct: 199 LYIEKAAVNPRHIEFQLIGDKYGNYVVAWERECTI-------QRRNQKLIEEAPSPAITM 251

Query: 225 KEVQRLAFLAH---QAIGCRGISRSDFLFDPLSRKVFWLEIN 263
           +E  R+    +   + I    +   + +F   +R+ ++LE+N
Sbjct: 252 EERSRMFEPIYKYGKLINYFTLGTFETVFSDATREFYFLELN 293


>gi|227550571|ref|ZP_03980620.1| acetyl-CoA carboxylase [Enterococcus faecium TX1330]
 gi|257897026|ref|ZP_05676679.1| acetyl-CoA carboxylase [Enterococcus faecium Com12]
 gi|293378719|ref|ZP_06624877.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Enterococcus
           faecium PC4.1]
 gi|227180279|gb|EEI61251.1| acetyl-CoA carboxylase [Enterococcus faecium TX1330]
 gi|257833591|gb|EEV60012.1| acetyl-CoA carboxylase [Enterococcus faecium Com12]
 gi|292642647|gb|EFF60799.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Enterococcus
           faecium PC4.1]
          Length = 459

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 76/220 (34%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  FG   E+    ++ E   I +            +K+ ++Q++    VPV P    
Sbjct: 77  AIHPGFGFLSENSRFASMCEECNITFIGPKSATIDAMGNKINARQLMQEANVPVIPGSTG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGD 164
            +      ++    I  P ++K   GG   GI  ++  + +P          ++++ + D
Sbjct: 137 VLSTVEEALEIADRIGYPVMLKAAAGGGGKGIRKVQSKEELPQHFSSAQQEAAAAFGNDD 196

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             L +       +   ++GD   +V  +            K             I     
Sbjct: 197 MYLEKIIYPARHIEVQILGDHFGNVIHLGERDCSLQRNNQKVL----EESPSVVISQSKR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +   A  A +A+        +FL D    + +++E+N 
Sbjct: 253 EALGDAAVRAAKAVNYENAGTIEFLMDE-EGEFYFMEMNT 291


>gi|255075411|ref|XP_002501380.1| carbamoyl-phosphate synthase [Micromonas sp. RCC299]
 gi|226516644|gb|ACO62638.1| carbamoyl-phosphate synthase [Micromonas sp. RCC299]
          Length = 1078

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 53/284 (18%), Positives = 99/284 (34%), Gaps = 46/284 (16%)

Query: 18  SGKACASALEDAGFKVSQI---------DVDRS------------VGLVLAHLKPDLAFN 56
           SG     +L   G+ V  +         D + +            V  +L   KPD    
Sbjct: 19  SGTQACKSLRAEGYDVVLLNSNPATIMTDPETANRTYVGPMTPELVEQILIKEKPDALLP 78

Query: 57  VLHG--------NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
            + G           E+G    ILE   +    + + A   + D+   K+ +   G+   
Sbjct: 79  TMGGQTALNLTKTLAENG----ILEKHGVELIGAKLDAINKAEDRQLFKEAMEKIGLKTP 134

Query: 109 PSILVNRFTMDSQ---HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
           PS   N +    +   ++ S P +I+P       G  +    +     +    + +   Q
Sbjct: 135 PSGTANNWDEAVEIADYIGSFPLIIRPAFTLGGSGGGIAYNMEEFKTIVTSGLNASTTTQ 194

Query: 166 LLIEQYVDG-IELTCGVMGD-ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
           +LIE+ + G  E    VM D A   V   ++   D           +S  + PA+ +   
Sbjct: 195 VLIEKSLLGWKEYELEVMRDLADNVVIVCSIENLDPMGVHT----GDSITIAPAQTLTDK 250

Query: 223 IYKEVQRLAFLAHQAIG--CRGISRSDFLFDPLSRKVFWLEINV 264
            Y+ ++  +    + IG  C G S      +P   ++  +E+N 
Sbjct: 251 EYQRLRDASVDIIREIGVECGG-SNVQMAVNPADGELMIIEMNP 293



 Score = 50.9 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 47/304 (15%), Positives = 105/304 (34%), Gaps = 47/304 (15%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ------ 69
           AL+DAG++   +         D D S  L    L  +   NV+     E  +VQ      
Sbjct: 579 ALKDAGYETIMLNSNPETVSTDYDTSDRLYFEPLTVEDVLNVVEAERPEGIIVQFGGQTP 638

Query: 70  ----AILELL-------------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
                 LE                     +   +   + D+ R + +++   +   P  +
Sbjct: 639 LSLATRLEKALTDNPIPAASGNGNCRILGTPPDSIDAAEDRERWQAILTELDILQPPGGV 698

Query: 113 VNRF--TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  + + + I  P +++P        + ++  D  +   +  +   +    +L+++
Sbjct: 699 ARSESEALVAANNIGYPVMVRPSFVLGGRAMEIVSSDADLKRYIRTAVEVDPEKPVLVDK 758

Query: 171 YV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQ 228
           Y+ +  EL    + DA  +V    + +   +  +    S +S   +P + IP      ++
Sbjct: 759 YLNNATELDVDALCDAEGNVVIAGIME---HIEQAGVHSGDSACSIPTQTIPESSLATIR 815

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS---F 285
                  + +G  G+    +   P    V+ +E N +   T     P +A   G+    +
Sbjct: 816 DWTPKVAKRLGVVGLINIQYAVIP-DGTVYIIEANPRASRT----VPFVAKAIGHPIAKY 870

Query: 286 RELL 289
             L+
Sbjct: 871 ASLV 874


>gi|83951732|ref|ZP_00960464.1| methylcrotonyl-CoA carboxylase, alpha subunit [Roseovarius
           nubinhibens ISM]
 gi|83836738|gb|EAP76035.1| methylcrotonyl-CoA carboxylase, alpha subunit [Roseovarius
           nubinhibens ISM]
          Length = 649

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 81/226 (35%), Gaps = 25/226 (11%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      +E   + +      A      K  +K ++   GVPV P    
Sbjct: 77  AIHPGYGFLSENPDFVEAVEAAGLVFIGPSAKAIRAMGLKDAAKALMEEAGVPVVPGYHG 136

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGD 164
                D        I  P +IK + GG   G+ ++++  +    L       ++++   +
Sbjct: 137 EEQDPDFLAQQAAEIGYPVLIKAVAGGGGKGMRLVEEPGAFGEALKSAQGEAATAFG-NE 195

Query: 165 QLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLD 222
            +LIE+Y+     +   V GD    V              L+          PA  +P  
Sbjct: 196 AVLIEKYIQQPRHIEVQVFGDGERAV------HLFERDCSLQRRHQKVIEEAPAPDMPEA 249

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR----KVFWLEINV 264
           +   +   A  A +AIG +G    +F+ D          +++E+N 
Sbjct: 250 VRAAMGAAAVRAAEAIGYKGAGTVEFIVDGSDGLRADGFWFMEMNT 295


>gi|325286175|ref|YP_004261965.1| acetyl-CoA carboxylase, biotin carboxylase [Cellulophaga lytica DSM
           7489]
 gi|324321629|gb|ADY29094.1| acetyl-CoA carboxylase, biotin carboxylase [Cellulophaga lytica DSM
           7489]
          Length = 451

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 33/220 (15%), Positives = 76/220 (34%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---S 110
            +H  +G   E+     I    +I +  +         DK  +++ +   GVP  P    
Sbjct: 77  AIHPGYGFLSENSKFSKICAEHDIKFIGASGEHIDRMGDKASARETMKKAGVPTIPGSDG 136

Query: 111 ILVNRFTMDS-QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL----DLLQSSSWNHGDQ 165
           +L +          +  P +IK   GG   G+  +  +  +       + ++++      
Sbjct: 137 LLKDVAEAKKVAKKMGYPVMIKATAGGGGKGMRAVWSEDKMEALYESAVQEATAAFGNGA 196

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+ ++    +   V+GD       ++           K     +       +   + 
Sbjct: 197 MYMEKLIEEPRHIEIQVVGDQYGKACHLSERDCSIQRRHQK----LTEETPSPFMTDKLR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            ++   A  A + I   G    +FL D   R  +++E+N 
Sbjct: 253 DDMGAAAVKAAEYIKYEGAGTIEFLVDKH-RNFYFMEMNT 291


>gi|300705382|ref|YP_003746985.1| methylcrotonoyl-CoA carboxylase subunit alpha [Ralstonia
           solanacearum CFBP2957]
 gi|299073046|emb|CBJ44403.1| Methylcrotonoyl-CoA carboxylase subunit alpha [Ralstonia
           solanacearum CFBP2957]
          Length = 674

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 41/221 (18%), Positives = 79/221 (35%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+           + +      A      K  +K ++   GVP+ P    
Sbjct: 77  AIHPGYGFLSENETFARACAEAGLVFVGPPASAIEAMGSKSAAKALMERAGVPLVPGYHG 136

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
           +             I  P +IK   GG   G+ V++  ++    L     ++SS    D+
Sbjct: 137 DNQDAAFLRAQADRIGYPVLIKASAGGGGKGMRVVEAGEAFEAALASVKREASSSFGDDR 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           +LIE+Y+     +   V  D   +   +           ++          PA  + LD 
Sbjct: 197 VLIEKYLTRPRHIEIQVFADGFDNAVYL-----FERDCSVQRRHQKVLEEAPAPGMTLDR 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +   A  A +A+G  G    +F+ D      +++E+N 
Sbjct: 252 RRAMGEAAVAAARAVGYVGAGTVEFIVDE-DGTFYFMEMNT 291


>gi|259046619|ref|ZP_05737020.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Granulicatella
           adiacens ATCC 49175]
 gi|259036784|gb|EEW38039.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Granulicatella
           adiacens ATCC 49175]
          Length = 461

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 32/221 (14%), Positives = 81/221 (36%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  FG   E+     +    +I +        +   DK  +++ + +  VPV P    
Sbjct: 82  AIHPGFGFLSENAKFAKMCAECQITFIGPSSEVISQMGDKAEARKQMIAANVPVIPGSDD 141

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS-----SWNHGD 164
            +      ++    I  P +IK + GG   GI  ++  +      + +      ++ + D
Sbjct: 142 IVPTVEEGIELAKRIGFPLLIKAVAGGGGKGIRRVESVEEFEHQFVTARQEALQAFGNAD 201

Query: 165 QLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            + +E+ +     +   ++ D   +V  +            + +           +   +
Sbjct: 202 -VYMERIIYPAKHIEIQILADQHGNVVHLGERDCSL----QRKNQKIIEEAPSPSLSSQL 256

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +++   A  A +A+G +     +FL D   +  +++E+N 
Sbjct: 257 RRDMGEAAVRAAKAVGYQNAGTIEFLVDE-DKHFYFMEMNT 296


>gi|225847972|ref|YP_002728135.1| carbamoyl-phosphate synthase large subunit [Sulfurihydrogenibium
           azorense Az-Fu1]
 gi|225644525|gb|ACN99575.1| carbamoyl-phosphate synthase large chain (Carbamoyl-phosphate
           synthetase ammonia chain) [Sulfurihydrogenibium azorense
           Az-Fu1]
          Length = 528

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 38/269 (14%), Positives = 97/269 (36%), Gaps = 43/269 (15%)

Query: 26  LEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAI----- 71
           L + G++   +         D D S  L    +  +  FN++      DG+V        
Sbjct: 31  LREEGYQAIMVNCNPETVSTDYDTSDKLFFEPIVLEDVFNIIE-REKPDGVVVQFGGQTP 89

Query: 72  ------LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHL 123
                 LE L +P   +   +  ++ D+ R + ++ S G+    S +       +     
Sbjct: 90  LKLAKPLEKLNVPILGTSPESIDIAEDRERFRDLIISLGLKQPESGIARSKEEALKIAEE 149

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG--------I 175
           I  P +++P        + ++     +   + ++ +      +LI++++DG        +
Sbjct: 150 IGYPVLVRPSYVLGGRAMRLVYDTSELLQYIEEAVTVTEDKPILIDKFLDGSIEVDVDCV 209

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
                V+  A ++  E A   S            ++T +    +  +I  ++++ +    
Sbjct: 210 CDGDDVLVGAVMEHIEEAGIHSG----------DSATCIPHYTLDDEIVVKIKQQSKKLA 259

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +A+   G+    +       +++ +E N 
Sbjct: 260 KALNTIGLINIQYAI--KDGEIYVIEANP 286


>gi|120403157|ref|YP_952986.1| pyruvate carboxylase [Mycobacterium vanbaalenii PYR-1]
 gi|119955975|gb|ABM12980.1| pyruvate carboxylase [Mycobacterium vanbaalenii PYR-1]
          Length = 1145

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 39/247 (15%), Positives = 83/247 (33%), Gaps = 18/247 (7%)

Query: 28  DAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87
           + G  V        +  V      D  +   +G   E+  + A      I +        
Sbjct: 56  EIGHPVRAYLSVAEIMRVAVEAGCDAVYPG-YGFLSENPELAAACADAGITFVGPSANVL 114

Query: 88  ALSMDKMRSKQVVSSCGVPV----CPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIV 143
            L+ +K R+ Q   + G+PV     PS  V+   + +   +  P  +K + GG   G+  
Sbjct: 115 ELTGNKARAIQAARAAGLPVLTSSAPSASVDEL-VAAADGMEFPLFVKAVSGGGGRGMRR 173

Query: 144 IKKDQSIPLDL-----LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD 198
           +    ++   +        S++   +  L +  ++   +   ++ D +  V         
Sbjct: 174 VTDRAALAEAVEAASREAESAFGDPNVYLEQAVLNPRHIEVQILADTAGHVM-----HLF 228

Query: 199 FYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
                ++        + PA  +P ++ +++   A    + I        +FL D     V
Sbjct: 229 ERDCSVQRRHQKVIELAPAPNLPDELRQKICDDAVAFAKEIDYSCAGTVEFLLDERGHHV 288

Query: 258 FWLEINV 264
           F  E N 
Sbjct: 289 FI-ECNP 294


>gi|315633695|ref|ZP_07888985.1| acetyl-CoA carboxylase, biotin carboxylase [Aggregatibacter segnis
           ATCC 33393]
 gi|315477737|gb|EFU68479.1| acetyl-CoA carboxylase, biotin carboxylase [Aggregatibacter segnis
           ATCC 33393]
          Length = 448

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 82/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+      +E     +         L  DK+ +   +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAEQVESSGFTFIGPTADVIRLMGDKVSAINAMKKAGVPCVPGSDG 136

Query: 111 --ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
                     +    I  P +IK   GG   G+ V++ ++++   +     ++ +  + D
Sbjct: 137 PLTSDIAKNKEIAKRIGYPIIIKASGGGGGRGMRVVRSEEALEESIAMTKAEAKAAFNND 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+Y++    +   V+ D   +   +A           K          PA  I  +
Sbjct: 197 MVYMEKYLENPRHVEIQVLADTHGNAVYLAERDCSMQRRHQK-----VVEEAPAPGITEE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +++      A   IG RG    +FL+   + + +++E+N 
Sbjct: 252 VRRDIGSRCAKACVEIGYRGAGTFEFLY--ENGEFYFIEMNT 291


>gi|229917791|ref|YP_002886437.1| carbamoyl-phosphate synthase, large subunit [Exiguobacterium sp.
           AT1b]
 gi|229469220|gb|ACQ70992.1| carbamoyl-phosphate synthase, large subunit [Exiguobacterium sp.
           AT1b]
          Length = 1006

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 60/294 (20%), Positives = 112/294 (38%), Gaps = 47/294 (15%)

Query: 1   MAVL-MG----GISSEREVSLSSGKACASALEDAGFKVSQI---------DVDRSVGLVL 46
           +A++  G    G   E + S  S  A   AL+  G +   I         D   +  L +
Sbjct: 547 VAIIGAGPIRIGQGIEFDYS--SVHAV-WALQKLGVETIMINNNPETVSTDFSIADKLYV 603

Query: 47  AHLKPDLAFNVLHGNFGEDGLVQ-----AI-----LELLEIPYTHSGILASALSMDKMRS 96
             L  +   +VL      D L+Q      I     LE        +         D+ R 
Sbjct: 604 EPLTSEDVIHVLEAEGCRDVLIQFGGQTGIALAHELETAGYHLLGASADTIDQMEDRERF 663

Query: 97  KQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154
            Q + S  V   P   V   T   ++   +  P +++P       G+++I  ++ +  ++
Sbjct: 664 YQFLDSIEVEHIPGEEVTSPTQLQEAIQQLGYPCILRPSYVIGGKGMLLIHSEEQL-AEV 722

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS---LDVTEIAVPKSDFYSYELKYSSLNS 211
           L + ++      L++QYV G EL    + D     + V    +  +  +S        +S
Sbjct: 723 LPNLAYPT----LVDQYVAGRELEVDCVTDGETVYVPVVLEQIEAAGVHS-------GDS 771

Query: 212 THV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           T V  P +  L I ++V+ +A    +A+  +G     F+ +  +  ++ LEIN 
Sbjct: 772 TMVLPPVETSLSIQEQVESIAKRIGRALDYKGALNIQFVLEEDT--IYVLEINP 823



 Score = 52.8 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 43/286 (15%), Positives = 88/286 (30%), Gaps = 33/286 (11%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI---------DVDRSVG------------LV 45
           G ++E + S   G     AL +AG +V  +         D   +               +
Sbjct: 16  GQAAEFDYS---GTQACQALREAGCEVVLLNSNPATIMTDPGMADATYIEAMTVQKATEI 72

Query: 46  LAHLKPDLAFNVLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   +P      + G    +  +      +L    I    + +       D+ R KQ + 
Sbjct: 73  IEKERPTHVLATVGGQTALNLALDLEEAGVLTQYGIELLGTSLDTIRDGEDRERFKQKME 132

Query: 102 SCGVPVCPSILVNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
               P+  S  +               P +++P       G  +   +        +   
Sbjct: 133 LLNEPIPTSTTIETIEELTAFIETTGVPLIVRPAFTLGGTGGGIAMTEDEAYAMARRGLE 192

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   Q L+E+ + G  E    VM DA    T I V   +       ++  +        
Sbjct: 193 ASPISQCLVEKSIAGYKEFEYEVMRDAFG--TCIIVCNMENIDPVGVHTGDSVVFAPAQT 250

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +   +++ ++  AF     +G  G     F   P   + + +E+N 
Sbjct: 251 LSDQMHQTLRSAAFRIVSELGVIGGCNIQFAVHPTQSEYYVIEVNP 296


>gi|157962621|ref|YP_001502655.1| carbamoyl-phosphate synthase L chain ATP-binding [Shewanella
           pealeana ATCC 700345]
 gi|157847621|gb|ABV88120.1| Carbamoyl-phosphate synthase L chain ATP-binding [Shewanella
           pealeana ATCC 700345]
          Length = 696

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 78/221 (35%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       E   I +      A      K  +K+++ +  VP+ P    
Sbjct: 77  AIHPGYGFLSENAEFALKCEQANIAFVGPSAAAIDSMGSKSAAKEIMGAANVPLVPGYHG 136

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
           +    +      + +  P +IK   GG   G+ +++    +   +  +          D+
Sbjct: 137 DSQDDELLVAEANKMGFPLLIKAAFGGGGKGMRIVESSDEVLEAINSARREAINSFGNDK 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           LL+E+Y+     +   V  D+  +   ++           K          PA  +   +
Sbjct: 197 LLMERYLRQPRHVEVQVFADSQGNCIYLSDRDCSIQRRHQK-----VVEEAPAPGLSDAL 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             ++   A  A +AI   G    +FL D      +++E+N 
Sbjct: 252 RVKMGEAAVAAAKAINYEGAGTVEFLLDT-DDSFYFMEMNT 291


>gi|134096646|ref|YP_001102307.1| acetyl-CoA carboxylase [Saccharopolyspora erythraea NRRL 2338]
 gi|133909269|emb|CAL99381.1| acetyl-CoA carboxylase [Saccharopolyspora erythraea NRRL 2338]
          Length = 449

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 82/220 (37%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   ED     I +   I           +  DK R+++V+   G+P+ P  L 
Sbjct: 77  AIHPGYGFLSEDPYFAEICQQHGITLIGPPPGVMDVLGDKARTRRVMRDAGLPLLPGTLS 136

Query: 114 NRFTMDSQH----LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN----HGDQ 165
              +          I  P +IK   GG   GI V++  +S+P  L ++ +          
Sbjct: 137 PVASAGEAERIADEIGYPVIIKASAGGGGSGITVVRDRESLPSALAETRATAQTLFKDPS 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+Y+     +   V+ D+      +            K            ++  D+ 
Sbjct: 197 VYLEKYLSPAHHVEIQVVCDSHGGAVHLGERDCSVQRRNQK----LVEEAPSPRVGDDLR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             + R A     A G +G+  ++FL D    + +++E+N 
Sbjct: 253 ARMGRAAVDGAVAAGYQGVGTAEFLLD-DDGEFWFMEVNP 291


>gi|326434978|gb|EGD80548.1| propionyl Coenzyme A carboxylase [Salpingoeca sp. ATCC 50818]
          Length = 714

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 79/220 (35%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      L+ L + +      A  +  DK+ SK    + GV + P    
Sbjct: 117 AVHPGYGFLSENKHFAMRLQELGVAFIGPNAHAIEIMGDKIESKICAENAGVNIIPGYSG 176

Query: 112 LVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
           +VN     ++  + I  P +IK   GG   G+ V   D+           ++ +    D+
Sbjct: 177 VVNDADHAVEIANQIGYPVMIKASAGGGGKGMRVAWNDKETREGFRMSSQEAKASFGDDR 236

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           LLIE+++D    +   V+ D   +   +   +        K             +     
Sbjct: 237 LLIEKFIDEPRHIEIQVLADTHGNTVYLNERECSIQRRNQK----VIEEAPSTFLDEATR 292

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K +   A    +A+        +FL D   R  ++ E+N 
Sbjct: 293 KAMGEQACALARAVDYVSAGTVEFLVDSQ-RNFYFCEMNT 331


>gi|297243330|ref|ZP_06927264.1| acetyl/propionyl-CoA carboxylase, alpha subunit [Gardnerella
           vaginalis AMD]
 gi|296888737|gb|EFH27475.1| acetyl/propionyl-CoA carboxylase, alpha subunit [Gardnerella
           vaginalis AMD]
          Length = 634

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 36/198 (18%), Positives = 73/198 (36%), Gaps = 14/198 (7%)

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN----RFTMDSQHLISPPYVI 130
             + +      A     DK+ +++V     VP  P I       R  +        P ++
Sbjct: 101 AGVIWIGPRPEALIDLGDKITARRVAVRAKVPPVPGISEPVKDIRELLTFAQTHGYPVMM 160

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG--DQLLIEQYVD-GIELTCGVMGDASL 187
           K   GG   GI V++ D  +    +   +   G  D+  IE+++D    +      DA  
Sbjct: 161 KRTDGGGGRGITVVRNDDELRGFYMNHDALQGGDLDEYFIERFIDKARHVETQCGRDAHG 220

Query: 188 DVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRS 246
           + T  +          ++  +       PA  +  D   ++ R +    +A+   G+   
Sbjct: 221 NFTVYST-----RDCSVQRRNQKLVEEAPAPFLTDDEKDQLYRYSRNLFEAVDYVGLGTC 275

Query: 247 DFLFDPLSRKVFWLEINV 264
           +++      KV++LE+N 
Sbjct: 276 EYMVTSQ-HKVYFLEVNP 292


>gi|296270928|ref|YP_003653560.1| hypothetical protein Tbis_2969 [Thermobispora bispora DSM 43833]
 gi|296093715|gb|ADG89667.1| protein of unknown function DUF201 [Thermobispora bispora DSM
           43833]
          Length = 402

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 31/159 (19%), Positives = 63/159 (39%), Gaps = 11/159 (6%)

Query: 31  FKVSQIDVDRS---VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87
            +    DV      +  ++ H  PD+ F+       E  LV    E   +P       A 
Sbjct: 42  HEAIATDVRDPRAMIDTIIGHHPPDVIFSDSDHIQAETALVA---EYFGLP--GKDWRAC 96

Query: 88  ALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147
           A + +K   ++ +++  V    S+ +   T      +  P V+KP  G +S  + +++ +
Sbjct: 97  ATAKNKSLMRRRLAA--VEPVRSVRLPPGTAPPAD-LPYPVVVKPALGVASEDVFLVRDE 153

Query: 148 QSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186
             +   +    +    D L+ E+Y++G   T   +GD  
Sbjct: 154 AELADAIADIRTRRPDDVLVAEEYLEGPLYTLETLGDGH 192


>gi|293392912|ref|ZP_06637229.1| carbamoyl-phosphate synthase, large subunit [Serratia odorifera DSM
           4582]
 gi|291424446|gb|EFE97658.1| carbamoyl-phosphate synthase, large subunit [Serratia odorifera DSM
           4582]
          Length = 1073

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 42/278 (15%), Positives = 96/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D +              V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +    Q +L    +    +   A   + D+ R    +   G+    S +
Sbjct: 89  TMGGQTALNCALELERQGVLAEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLDTARSGI 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     +     +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHTMEEALAVAADVGFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTKELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + +   +   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIEN----FDAMGIHTGDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RNASMAVLREIGVETGGSNVQFSVNPKTGRLIVIEMNP 302



 Score = 62.4 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 75/197 (38%), Gaps = 10/197 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYV 129
           LE   +P   +   A   + D+ R +Q V+  G+    +  V       +    I  P V
Sbjct: 654 LEAAGVPIIGTSPDAIDRAEDRERFQQAVNRLGLKQPANATVTAIDQAVEKAAGIGYPLV 713

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  +  +      + S ++   +L+++++ D +E+    + D    
Sbjct: 714 VRPSYVLGGRAMEIVYDEVDLRRYFQNAVSVSNDAPVLLDRFLDDAVEVDVDAICDGERV 773

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           +    +   +    +    S +S   LPA  +  +I   +++        +  RG+    
Sbjct: 774 LIGGIMEHIE----QAGVHSGDSACSLPAYTLSKEIQDVMRQQVEKLAFELQVRGLMNVQ 829

Query: 248 FLFDPLSRKVFWLEINV 264
           F       +V+ +E+N 
Sbjct: 830 FAV--KDNEVYLIEVNP 844


>gi|206900471|ref|YP_002250759.1| acetyl-CoA carboxylase, biotin carboxylase [Dictyoglomus
           thermophilum H-6-12]
 gi|206739574|gb|ACI18632.1| acetyl-CoA carboxylase, biotin carboxylase [Dictyoglomus
           thermophilum H-6-12]
          Length = 449

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 79/220 (35%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E      I +   I +            DK R+K+++   GVP+ P    
Sbjct: 79  AIHPGYGFLAESARFAEICQDHGIVFIGPKKEVIESLGDKARAKKLMKEAGVPLLPGSEG 138

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGDQ 165
            I   +  +     I  P +IK   GG   G+ +    + +     L  +++        
Sbjct: 139 LIEDEKQALRVAKEIGFPVLIKATAGGGGKGMRISYSPEELVKNIRLAKMEAEKNFGNPG 198

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE++++    +   ++GD       I        + + +Y  L         +   I 
Sbjct: 199 VYIEKFIEEPRHVEIQILGDQ---YGNIVSLGERDCTIQRRYQKL-IEESPSPVVNNRIR 254

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + + R A      +G  G    +FL D    K +++E+N 
Sbjct: 255 EAMSRAAIKGAYKVGYVGPGTFEFLLDK-DGKFYFMEVNT 293


>gi|126179330|ref|YP_001047295.1| hypothetical protein Memar_1384 [Methanoculleus marisnigri JR1]
 gi|125862124|gb|ABN57313.1| protein of unknown function DUF201 [Methanoculleus marisnigri JR1]
          Length = 295

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 46/264 (17%), Positives = 94/264 (35%), Gaps = 45/264 (17%)

Query: 20  KACASALEDAGFKV-SQIDVDRSVGLVLAHLKPDLAFNVL--HGNFGEDGLVQAILELLE 76
            A + + E  G+ V +    D    +     + D+   +   H  F    L++ +     
Sbjct: 25  AAISESFERCGYDVVTPESPDFEGEIKRLAPECDVGMVIAPDHLLFRYTHLLEGLTHN-- 82

Query: 77  IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGG 136
                 G + +A+  +K R+  ++S  G+ V P+    R             V+KP+ G 
Sbjct: 83  ---VGCGSMNAAVCANKQRTADILSRNGIAVPPAAGEGRR------------VVKPIMGC 127

Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT------ 190
            +LG   ++     P     + ++  G+ L +      +          +  +       
Sbjct: 128 GALG---VRLTDEEPGAGEFAQAYVEGEALSVSLVGSRVTGNVCEFYTGAAPLLLAVNRQ 184

Query: 191 EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
           EIAV     + Y         T V P     D  +E+   A  A   +GC+G +  D + 
Sbjct: 185 EIAVADDGRFLY-----LGGETPVHP-----DREEEIVDAAVRAMNVLGCQGYAGIDVVV 234

Query: 251 DPLSRKVFWLEINVQPGMTPVSIF 274
                +++ +++N +P     S+ 
Sbjct: 235 ---GDRIYVVDVNPRP---TTSLV 252


>gi|46198555|ref|YP_004222.1| carbamoyl phosphate synthase large subunit [Thermus thermophilus
           HB27]
 gi|47606747|sp|P96495|CARB_THET2 RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|46196177|gb|AAS80595.1| carbamoyl-phosphate synthase large chain [Thermus thermophilus
           HB27]
          Length = 1028

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 56/293 (19%), Positives = 101/293 (34%), Gaps = 46/293 (15%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI---------DVD------------RSVGLV 45
           G ++E + S   G     AL  AG++V  +         D +              +  +
Sbjct: 21  GQAAEFDYS---GTQAVKALRGAGYRVVLVNSNPATIMTDPELAERTYIEPLDLEHLEGI 77

Query: 46  LAHLKPDLAFNVLHGNFG--------EDGLVQAILELLEIPYTHSGILASALSMDKMRSK 97
           LA   PD     L G  G        E+G++Q       +    +   A     D+   +
Sbjct: 78  LAREAPDALLPTLGGQTGLNLAMALYEEGILQKY----GVELIGAKAEAIRKGEDREAFQ 133

Query: 98  QVVSSCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
           + +    + V    LV      +     +  P V++P       G  +   +  +   L 
Sbjct: 134 EAMRRIDLEVPRGQLVGSVEEGLHFAREVGFPVVVRPSFTLGGTGGGIAHDEAELVEVLS 193

Query: 156 QSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEI-AVPKSDFYSYELKYSSLNSTH 213
           +  + +     L+E+ V G  E    VM D +  V  I ++   D           +S  
Sbjct: 194 RGLTLSPVHTALVEESVLGWKEFELEVMRDHADTVVIITSIENVDPMGVHT----GDSIT 249

Query: 214 VLPAK-IPLDIYKEVQRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           V PA+ +    Y+ ++  A    + IG   G S   F  DP + +   +E+N 
Sbjct: 250 VAPAQTLSDVEYQRMRDAAKAIIREIGVETGGSNIQFAVDPKTGRQVVIEMNP 302



 Score = 65.1 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 45/289 (15%), Positives = 105/289 (36%), Gaps = 36/289 (12%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVL-HGNFGEDGLVQAI--- 71
           AL++AGF+   +         D D +  L    L  +   N++ H      G++  +   
Sbjct: 583 ALKEAGFETIMVNSNPETVSTDYDTADRLYFEPLTLEDVLNIVEHEKP--IGVIATLGGQ 640

Query: 72  --------LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTMDSQ 121
                   LE   +    +   A   + D+     +    G+P     +       +   
Sbjct: 641 TPLKLAKGLEEAGVRLLGTPFSAIHQAEDREAFHALCQRLGIPQPEGRVAQSPEEALRLA 700

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-WNHGDQLLIEQYVDG-IELTC 179
             +  P +++P        + V++ +  +   L +  +       +L++++++G IEL  
Sbjct: 701 PEVGFPLLVRPSYVLGGRAMQVVRDEGELKRYLEEVYAPLEERPSILLDRFLEGAIELDV 760

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
             + D    +    +   +       +S  ++T + P  +P +  K+V+         +G
Sbjct: 761 DALSDGQEVMVAGIMEHVERAGV---HSGDSATLLPPVHVPEEALKKVRDYTRRLALTLG 817

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
            RG+   +  +  +  +V+ LE N +   T     P ++   G    +L
Sbjct: 818 VRGL--LNVQYAVVGEEVYVLEANPRASRT----VPFVSKAIGVPLAKL 860


>gi|330823366|ref|YP_004386669.1| cyanophycin synthetase [Alicycliphilus denitrificans K601]
 gi|329308738|gb|AEB83153.1| cyanophycin synthetase [Alicycliphilus denitrificans K601]
          Length = 863

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 23/112 (20%), Positives = 50/112 (44%), Gaps = 5/112 (4%)

Query: 88  ALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIV-I 144
           +++ DK  +K+++ + GVPV     V            +  P V+KP  G    G+ V I
Sbjct: 200 SIAQDKDLTKRLLHAAGVPVPLGRPVADVHDAWKVAEEVGLPVVVKPQDGNQGKGVTVNI 259

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK 196
                +      +++  +GD++++E+++ G +    V+G   +       P+
Sbjct: 260 TTRAQLEAAY--ATALQYGDEVMVERFLPGHDFRLLVVGHQLVAAARREPPQ 309


>gi|301162608|emb|CBW22155.1| putative biotin carboxylase 1 [Bacteroides fragilis 638R]
          Length = 503

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 80/220 (36%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+       E   + +        A    K  +++++   G+P+ P    
Sbjct: 76  AIHPGYGFLSENADFARRCEEEGVIFIGPSADIIARMGIKTEARRIMREAGLPIVPGTED 135

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN----HGDQ 165
            +            +  P ++K L GG   G+ +++ ++ +   L  S S        D 
Sbjct: 136 PVKGIAEAKKVAAEVGYPIMLKALAGGGGKGMRLVRSEEEMETALRLSRSEAGTSFGNDA 195

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+Y++    +   ++GD   +V  +   +        K             +  +  
Sbjct: 196 VYIEKYIENPHHIEVQILGDKYGNVIHLYERECSIQRRNQK----VIEESPSPFVKPETR 251

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            ++ ++A  A + I        +F+ D   +  ++LE+N 
Sbjct: 252 AKMLKVAVEACKRINYYSAGTLEFMMDK-DQNFYFLEMNT 290


>gi|299068210|emb|CBJ39429.1| Methylcrotonoyl-CoA carboxylase subunit alpha [Ralstonia
           solanacearum CMR15]
          Length = 674

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 79/221 (35%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+           + +      A      K  +K ++ + GVP+ P    
Sbjct: 77  AIHPGYGFLSENEAFARACSEAGLVFVGPPASAIEAMGSKSAAKALMETAGVPLVPGYHG 136

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
           +             I  P +IK   GG   G+ V++  ++    L     ++SS    D+
Sbjct: 137 DNQDAAFLRTQADRIGYPVLIKASAGGGGKGMRVVETGEAFAAALASVKREASSSFGDDR 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           +LIE+Y+     +   V  D   +   +           ++          PA  +  + 
Sbjct: 197 VLIEKYLTRPRHIEIQVFADGLGNAVYL-----FERDCSVQRRHQKVLEEAPAPGMTPER 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +   A  A +A+G  G    +F+ D      +++E+N 
Sbjct: 252 RRAMGEAAVAAARAVGYVGAGTVEFIVDE-DGTFYFMEMNT 291


>gi|319761497|ref|YP_004125434.1| cyanophycin synthetase [Alicycliphilus denitrificans BC]
 gi|317116058|gb|ADU98546.1| cyanophycin synthetase [Alicycliphilus denitrificans BC]
          Length = 863

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 23/112 (20%), Positives = 50/112 (44%), Gaps = 5/112 (4%)

Query: 88  ALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIV-I 144
           +++ DK  +K+++ + GVPV     V            +  P V+KP  G    G+ V I
Sbjct: 200 SIAQDKDLTKRLLHAAGVPVPLGRPVADVHDAWKVAEEVGLPVVVKPQDGNQGKGVTVNI 259

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK 196
                +      +++  +GD++++E+++ G +    V+G   +       P+
Sbjct: 260 TTRAQLEAAY--ATALQYGDEVMVERFLPGHDFRLLVVGHQLVAAARREPPQ 309


>gi|237729329|ref|ZP_04559810.1| carbamoyl-phosphate synthase large subunit [Citrobacter sp. 30_2]
 gi|226909058|gb|EEH94976.1| carbamoyl-phosphate synthase large subunit [Citrobacter sp. 30_2]
          Length = 1074

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 42/278 (15%), Positives = 97/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D +              V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +    Q +L    +    +   A   + D+ R    +   G+    S +
Sbjct: 89  TMGGQTALNCALELERQGVLAEFGVTMIGATADAIDKAEDRRRFDIAMKKIGLDTARSGI 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     +     +  P +I+P       G  +    +       +    +  ++LLI++
Sbjct: 149 AHTMEEALAVAADVGFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTNELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + +   +   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIEN----FDAMGIHTGDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RNASMAVLREIGVETGGSNVQFAVNPKNGRLIVIEMNP 302



 Score = 61.7 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/197 (15%), Positives = 76/197 (38%), Gaps = 10/197 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           LE   +P   +   A   + D+ R +Q V    +    +  V      ++    I  P V
Sbjct: 654 LEAAGVPVIGTSPDAIDRAEDRERFQQAVDRLKLKQPANATVTAIEQAVEKAKEIGYPLV 713

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  +  +      + S ++   +L+++++ D +E+    + D  + 
Sbjct: 714 VRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDRFLDDAVEVDVDAICDGEMV 773

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           +    +   +    +    S +S   LPA  +  +I   +++        +  RG+    
Sbjct: 774 LIGGIMEHIE----QAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRGLMNVQ 829

Query: 248 FLFDPLSRKVFWLEINV 264
           F     + +V+ +E+N 
Sbjct: 830 FAV--KNNEVYLIEVNP 844


>gi|222109852|ref|YP_002552116.1| cyanophycin synthetase [Acidovorax ebreus TPSY]
 gi|221729296|gb|ACM32116.1| cyanophycin synthetase [Acidovorax ebreus TPSY]
          Length = 723

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/105 (23%), Positives = 51/105 (48%), Gaps = 5/105 (4%)

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIV-IK 145
           ++ DK  +K++++SCGVPV    +V       +    I  P  +KP  G  + G+ + + 
Sbjct: 217 IAQDKDFTKRLLASCGVPVPEGQIVRNADEAWEVAQEIGFPVTVKPSDGNHARGVTLELS 276

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190
           ++  I      +     G  +++E+++DG+E    V+G   +  T
Sbjct: 277 READIKAAFALAEP--EGSDVIVEKFIDGVEHRLLVVGGKVVAAT 319


>gi|254526071|ref|ZP_05138123.1| carbamoyl-phosphate synthase, large subunit [Prochlorococcus
           marinus str. MIT 9202]
 gi|221537495|gb|EEE39948.1| carbamoyl-phosphate synthase, large subunit [Prochlorococcus
           marinus str. MIT 9202]
          Length = 1098

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 56/279 (20%), Positives = 103/279 (36%), Gaps = 36/279 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL +AG+++  I         D D              V  ++   KPD    
Sbjct: 29  SGTQACKALRNAGYEIILINSNPASIMTDPDIANKTYIEPLTSEIVSQIILKEKPDAILP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  V+      L+   I    + + A   + D+   K+ +    V VCPS +
Sbjct: 89  TMGGQTALNLAVKLSESDFLKQNNIELIGADLRAINKAEDRKLFKESMEKINVNVCPSGI 148

Query: 113 ---VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
              ++     S+ + S P +I+P      +G  +    +            +  +Q+LIE
Sbjct: 149 ASNLDEAMEVSKEISSYPLIIRPAFTLGGVGGGIAFNLEEFVELCKSGLEESPSNQILIE 208

Query: 170 QYVDG-IELTCGVMGDASL-DVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKE 226
           + + G  E    VM D +   V   ++   D           +S  V PA+ +    Y+ 
Sbjct: 209 KSLIGWKEYELEVMRDTADNVVIVCSIENLDPMGVHT----GDSITVAPAQTLTDKEYQR 264

Query: 227 VQRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           ++ L+    + +G   G S   F  +P +  V  +E+N 
Sbjct: 265 LRDLSLKIIREVGVETGGSNIQFAINPTNGDVIVIEMNP 303



 Score = 44.7 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 83/221 (37%), Gaps = 14/221 (6%)

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVC-PSILVNRFTMD-SQHLISPPYVIKPLKGGSS 138
            +  ++  L+ D+    +++    +      I  N+   +     I  P V++P      
Sbjct: 682 GTSPISIDLAEDREEFTKILEELSIRQPLNGIARNQDEAEIVAKNIGFPLVVRPSYVLGG 741

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKS 197
             + ++K +  +   + ++   +    +L++QY+ + IE+    + D+   V    + + 
Sbjct: 742 RAMEIVKDENELSRYITEAVKVSPDHPILLDQYLNNAIEIDVDALCDSKGSVVIAGLMEH 801

Query: 198 DFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS-- 254
                     S +S   LP   + L   + V++   L  Q +   G+    F     +  
Sbjct: 802 V---EPAGIHSGDSACCLPSISLSLSTIENVRKWTKLIAQRLNVVGLINLQFAVTNTNNK 858

Query: 255 -RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             K+F LE N +   T     P ++   G    +L   +++
Sbjct: 859 ENKLFILEANPRASRT----VPFVSKAIGKPIAKLATQLMQ 895


>gi|288932516|ref|YP_003436576.1| alpha-L-glutamate ligase, RimK family [Ferroglobus placidus DSM
           10642]
 gi|288894764|gb|ADC66301.1| alpha-L-glutamate ligase, RimK family [Ferroglobus placidus DSM
           10642]
          Length = 297

 Score = 68.2 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 35/204 (17%), Positives = 81/204 (39%), Gaps = 21/204 (10%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL--VNRFTMDSQHLISPPYV 129
           LE L + +  +   +   + DK+ + Q++++  +P+  ++L          +   + P +
Sbjct: 82  LEKLGV-FVLNSSQSIEAAKDKLATLQILAANNIPIPKTMLAKFPLNVDIVEKEFNYPLI 140

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQL--LIEQYV---DGIELTCGVMGD 184
           +K + G    G+ + +    +  DLL     +   ++  +I+++V    G ++   V+G 
Sbjct: 141 VKTVSGSHGKGVFLCENRAQLE-DLLGLLEISKDPKVNLIIQEFVSSSKGRDIRVFVVGG 199

Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244
            ++           F     K +  +   V P  +   +      LA  + + +G   I+
Sbjct: 200 RAIGAMLRKAKGEKF-----KANFSSGGEVSPFNLNPAVE----WLAVESAKLLGL-DIA 249

Query: 245 RSDFLFDPLSRKVFWLEINVQPGM 268
             D LF+         E+N  PG 
Sbjct: 250 GVDVLFN--GDSYMVCEVNSSPGF 271


>gi|283783640|ref|YP_003374394.1| carbamoyl-phosphate synthase L chain, ATP binding domain protein
           [Gardnerella vaginalis 409-05]
 gi|298252902|ref|ZP_06976696.1| acetyl/propionyl-CoA carboxylase, alpha subunit [Gardnerella
           vaginalis 5-1]
 gi|283441940|gb|ADB14406.1| carbamoyl-phosphate synthase L chain, ATP binding domain protein
           [Gardnerella vaginalis 409-05]
 gi|297533266|gb|EFH72150.1| acetyl/propionyl-CoA carboxylase, alpha subunit [Gardnerella
           vaginalis 5-1]
          Length = 637

 Score = 68.2 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 36/198 (18%), Positives = 73/198 (36%), Gaps = 14/198 (7%)

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN----RFTMDSQHLISPPYVI 130
             + +      A     DK+ +++V     VP  P I       R  +        P ++
Sbjct: 101 AGVIWIGPRPEALIDLGDKITARRVAVRAKVPPVPGISEPVKDIRELLTFAQTHGYPVMM 160

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG--DQLLIEQYVD-GIELTCGVMGDASL 187
           K   GG   GI V++ D  +    +   +   G  D+  IE+++D    +      DA  
Sbjct: 161 KRTDGGGGRGITVVRNDDELRGFYMNHDALQGGDLDEYFIERFIDKARHVETQCGRDAHG 220

Query: 188 DVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRS 246
           + T  +          ++  +       PA  +  D   ++ R +    +A+   G+   
Sbjct: 221 NFTVYST-----RDCSVQRRNQKLVEEAPAPFLTDDEKDQLYRYSRNLFEAVDYVGLGTC 275

Query: 247 DFLFDPLSRKVFWLEINV 264
           +++      KV++LE+N 
Sbjct: 276 EYMVTSQ-HKVYFLEVNP 292


>gi|257464131|ref|ZP_05628513.1| carbamoyl phosphate synthase large subunit [Fusobacterium sp. D12]
 gi|317061647|ref|ZP_07926132.1| carbamoyl-phosphate synthase,pyrimidine-specific [Fusobacterium sp.
           D12]
 gi|313687323|gb|EFS24158.1| carbamoyl-phosphate synthase,pyrimidine-specific [Fusobacterium sp.
           D12]
          Length = 1069

 Score = 68.2 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 31/216 (14%), Positives = 83/216 (38%), Gaps = 22/216 (10%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH------LIS 125
           LE   +    +G      + D+ + ++++ +  +         R + D +H       + 
Sbjct: 648 LEKRNVKILGTGAEKIDEAEDREKFEEMMENLDIKRPKG----RASWDVEHGIAIAKEVG 703

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            P +++P       G+ +   + ++   L  S S +    +LI++Y++GIEL    + D 
Sbjct: 704 YPVLVRPSYVLGGQGMEICHDEINLIKYLEASFSRDASSPVLIDKYLNGIELEVDAICDG 763

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGIS 244
              +    +   +           +S  + P   +     +++  +     +A+  +G+ 
Sbjct: 764 EDVLIPGVMEHLERAGVHS----GDSITIYPQQNLYPGTEEQILEITTKIARALEVKGMM 819

Query: 245 RSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFP 275
              F+      +++ +E+N       P ++ +S  P
Sbjct: 820 NIQFI--AYQNELYVIEVNPRSSRTVPYISKISGLP 853



 Score = 62.1 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 56/287 (19%), Positives = 107/287 (37%), Gaps = 35/287 (12%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQID-------VDRSVGL--------------V 45
           G ++E + S   G      L+  G +V  I+        D+++                V
Sbjct: 20  GQAAEFDYS---GTQACETLKKEGIEVVLINSNPATIMTDKAIADRIYIEPITFEFVVKV 76

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   +PD     + G    +  V+     ILE   I    + I +     D+   ++ + 
Sbjct: 77  IEKERPDSIIAGMGGQTALNMAVELSEKGILEKYGIKVIGTSIESIKRGEDRELFREAME 136

Query: 102 SCGVPVCPSILVNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G P+  S +V          + I  P V++P       G       Q +   LL+  S
Sbjct: 137 KIGEPILKSHVVESLEEGYKIANEIGYPVVVRPAYTLGGTGGGFAHNPQELEEILLKGLS 196

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   Q+LIE+ + G  E+   V+ DA+ +   +   ++      +   + +S  V P++
Sbjct: 197 LSRVGQVLIERSILGWKEIEYEVIRDANGNAITVCNMEN---IDPVGIHTGDSIVVAPSQ 253

Query: 219 -IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +    Y+ ++R +    + IG  G     F   P S +   +EIN 
Sbjct: 254 TLTDREYQMLRRASLKIVEEIGIVGGCNVQFALHPKSFEYAIIEINP 300


>gi|242241082|ref|YP_002989263.1| acetyl-CoA carboxylase, biotin carboxylase [Dickeya dadantii
           Ech703]
 gi|242133139|gb|ACS87441.1| acetyl-CoA carboxylase, biotin carboxylase [Dickeya dadantii
           Ech703]
          Length = 447

 Score = 68.2 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 80/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         L  DK+ +   +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAEQVEQSGFIFIGPRADTIRLMGDKVSAISAMKKAGVPCVPGSDG 136

Query: 112 -LVNRFTMDS--QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
            L +    +      I  P +IK   GG   G+ V++ D+ +   +     ++ +  + D
Sbjct: 137 PLGDDMDKNRSIAKRIGYPVIIKASGGGGGRGMRVVRNDKDLEQSIAMTRAEAKAAFNND 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+Y++    +   V+ D       +A           K          PA  I  +
Sbjct: 197 MVYMEKYLENPRHVEIQVLADGQGSAIYLAERDCSMQRRHQK-----VVEEAPAPGITPE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + + +      A   I  RG    +FLF   + + +++E+N 
Sbjct: 252 LRRYIGERCAKACVDISYRGAGTFEFLF--ENGEFYFIEMNT 291


>gi|50085596|ref|YP_047106.1| bifunctional biotin carboxylase/biotin carboxyl carrier protein
           [Acinetobacter sp. ADP1]
 gi|49531572|emb|CAG69284.1| Acetyl-/propionyl-coenzyme A carboxylase alpha chain [Includes:
           Biotin carboxylase ; Biotin carboxyl carrier protein
           (BCCP)] [Acinetobacter sp. ADP1]
          Length = 576

 Score = 68.2 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 34/205 (16%), Positives = 73/205 (35%), Gaps = 15/205 (7%)

Query: 69  QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN----RFTMDSQHLI 124
           QA+L+   + +      +     DK+ ++++ +S G P+   I       +  +D    +
Sbjct: 96  QAVLD-AGLIWIGPSPHSIQKLGDKIEARKIAASVGAPLVQGISEPLQNSKQALDFAKAV 154

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQS----IPLDLLQSSSWNHGDQLLIEQYVD-GIELTC 179
             P  IK   GG   G+ V+   +         + ++ +     +  +EQY+D    +  
Sbjct: 155 GLPIAIKAAYGGGGRGLKVVWTLEEVETLYESAVREAVTAFGRGECFVEQYLDKPRHIEA 214

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
            ++ D    V  +            K             I   IY+++   +    +A  
Sbjct: 215 QIIADQHGHVVVVGTRDCSLQRRNQK----LVEEAPAPFIDDTIYQQILESSRNICRAAD 270

Query: 240 CRGISRSDFLFDPLSRKVFWLEINV 264
             G    ++L      K+ +LE+N 
Sbjct: 271 YVGAGTVEYLLS-RDGKLSFLEVNT 294


>gi|15921798|ref|NP_377467.1| carbamoyl phosphate synthase large subunit [Sulfolobus tokodaii
           str. 7]
 gi|22095518|sp|Q970U7|CARB_SULTO RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|15622585|dbj|BAB66576.1| 1049aa long hypothetical carbamoyl-phosphate synthase large subunit
           [Sulfolobus tokodaii str. 7]
          Length = 1049

 Score = 68.2 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 56/299 (18%), Positives = 114/299 (38%), Gaps = 38/299 (12%)

Query: 18  SGKACASALEDAGFKVSQI------------DVDR---------SVGLVLAHLKPDLAFN 56
           SG     AL++ G +   +              D+         +V  V+   +PD    
Sbjct: 27  SGSQALKALKEEGIETILVNSNVATVQTSRKFADKLYMIPVTWWAVEKVIERERPDGIMV 86

Query: 57  VLHG----NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
              G    N G D   + IL+   +    + I     ++ + + ++ + + G+PV PS+ 
Sbjct: 87  GFGGQTALNVGVDLYNKGILQKYGVKVLGTPIEGIERALSREKFRETMINVGLPVPPSLS 146

Query: 113 VNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  ++    I  P +++        G IV   ++ +  D+ ++ S ++  ++LIE+
Sbjct: 147 ARSEEEALEKARQIGYPVMVRVSFNLGGRGSIVAWNEEELKRDIGRALSQSYIHEVLIEK 206

Query: 171 YV-DGIELTCGVMGDASLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
           Y+   IEL   VM D   +   IA  ++ D            ST + P + +    ++++
Sbjct: 207 YLHHWIELEYEVMRDKYGNSAVIACIENLDPMGVHT----GESTVISPCQTLDNKEFQDM 262

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           + ++    ++I   G     F  DP     + +E    P M+  S     +   GY   
Sbjct: 263 RFMSMDVAKSIDLVGECNVQFALDPKGYNYYVIE--TNPRMSRSS--ALASKATGYPLA 317



 Score = 54.4 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/196 (13%), Positives = 74/196 (37%), Gaps = 11/196 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ--HLISPPYV 129
           LE   I    +   +   + D+ +  +++   G+     I         +    +  P +
Sbjct: 649 LEEEGIRLLGTSGRSIDTAEDREKFSKLLDKLGIKQPEWISARSLEEVKEFISKVGYPVL 708

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           I+P    S   + ++  D  +   L +++  +    ++I +Y+ D IE      GD    
Sbjct: 709 IRPSYVLSGAAMKIVNNDLELMEYLKRATEVSPEHPVVISKYLNDAIEAEIDAAGDGKGV 768

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
              +       +  E    S ++T  +P + +  ++  +++    +  + +  +G     
Sbjct: 769 YGVVIE-----HVEEAGVHSGDATMSIPYRKLSSNVVNKMKENVHMIVRELEIKGPFNVQ 823

Query: 248 FLFDPLSRKVFWLEIN 263
           F+    + + + +E+N
Sbjct: 824 FVI--KNNEPYIIELN 837


>gi|134292568|ref|YP_001116304.1| acetyl-CoA carboxylase biotin carboxylase subunit [Burkholderia
           vietnamiensis G4]
 gi|134135725|gb|ABO56839.1| acetyl-CoA carboxylase, biotin carboxylase [Burkholderia
           vietnamiensis G4]
          Length = 487

 Score = 68.2 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 73/220 (33%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+    A +E   + +        A   DK R+++      VP  P    
Sbjct: 91  AIHPGYGFLSENAAFAAQVEAAGLIFVGPDAHVIATMGDKARARETAQRANVPTVPGSDG 150

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGDQ 165
            +            I  P +IK   GG   GI V      +  +L     ++ +      
Sbjct: 151 VVHSLEEAQAVAARIGYPLMIKAAAGGGGRGIRVSHDAAQLEAELPLVQREAQAAFGNGG 210

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+++     +   V+GD   +V  +   +        K             +     
Sbjct: 211 VYLERFIARARHIEVQVLGDGR-NVVHLFERECSLQRRRQKIL----EEAPSPSLTPAQR 265

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +   A    + +G R     ++L+D    + +++E+N 
Sbjct: 266 DALCESATRLAREVGYRSAGTLEYLYDDARGEFYFIEMNT 305


>gi|332686826|ref|YP_004456600.1| phosphoribosylaminoimidazole carboxylase ATPase subunit
           [Melissococcus plutonius ATCC 35311]
 gi|332370835|dbj|BAK21791.1| phosphoribosylaminoimidazole carboxylase ATPase subunit
           [Melissococcus plutonius ATCC 35311]
          Length = 373

 Score = 68.2 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 32/207 (15%), Positives = 80/207 (38%), Gaps = 15/207 (7%)

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTMDSQ 121
           E+  V+A+ E+ ++     G    A++ D++  K  +    + + P   +       D+ 
Sbjct: 78  ENVSVEALTEIEDLVSIPQGTDLLAITQDRLLEKSFLEDNNIIIAPYATIVSPTDIQDAI 137

Query: 122 HLISPPYVIKPLKGG-SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTC 179
             I  P ++K   GG    G  ++     +   +            ++E  +    E++ 
Sbjct: 138 DGIGYPCILKTTHGGYDGHGQYILHNPSDLVPAMEL----LRQGACVLEALIPYEKEISI 193

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
            + GD   + T   V ++         +++    + PA+I  ++ +E +R+A +  +A+ 
Sbjct: 194 LISGDGQKNYTTFPVVENIH------KNNILYETIAPARIADEVIEEAERIARVIAEAVN 247

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQP 266
             G    +         ++  E+  +P
Sbjct: 248 LAGTLAIEMFLMKSGG-IYVNELAPRP 273


>gi|254700834|ref|ZP_05162662.1| acetyl-CoA carboxylase alpha chain / propionyl-CoA carboxylase
           alpha chain [Brucella suis bv. 5 str. 513]
 gi|261751343|ref|ZP_05995052.1| carbamoyl-phosphate synthase subunit L ATP-binding protein
           [Brucella suis bv. 5 str. 513]
 gi|261741096|gb|EEY29022.1| carbamoyl-phosphate synthase subunit L ATP-binding protein
           [Brucella suis bv. 5 str. 513]
          Length = 655

 Score = 68.2 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 39/225 (17%), Positives = 73/225 (32%), Gaps = 22/225 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      +E   + +      A      K  +K ++   GVPV P    
Sbjct: 77  AIHPGYGFLSENPAFVDAVEEAGLIFIGPSAKAIRAMGLKDAAKALMEKAGVPVVPGYHG 136

Query: 114 NRFT----MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
           +             I+ P +IK   GG   G+  +         L     ++ +      
Sbjct: 137 DNQDGAFLKSEADRITYPVLIKARAGGGGKGMRRVDSAADFAAALESARREAEASFGDGA 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           +L+E+Y+     +   V GD   +               L+          PA  +  ++
Sbjct: 197 VLVEKYMAKPRHIEVQVFGDNHGNAV-----HLFERDCSLQRRHQKVIEEAPAPGMTEEM 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR----KVFWLEINV 264
              +   A  A   IG  G    +F+ D        + F++E+N 
Sbjct: 252 RAAMGEAAVKAALTIGYSGAGTVEFVADVSEGLRPDRFFFMEMNT 296


>gi|167646962|ref|YP_001684625.1| carbamoyl-phosphate synthase subunit L [Caulobacter sp. K31]
 gi|167349392|gb|ABZ72127.1| Carbamoyl-phosphate synthase L chain ATP-binding [Caulobacter sp.
           K31]
          Length = 669

 Score = 68.2 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 70/220 (31%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H  FG   E+           I +      A +   DK+ SK+     GV   P  + 
Sbjct: 77  AVHPGFGFLSENASFAQRCADEGIVFIGPNPGAISAMGDKIESKKFAQKAGVSCVPGHIG 136

Query: 113 ---VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS----IPLDLLQSSSWNHGDQ 165
                   +     +  P +IK   GG   GI V    Q      P    ++ +    D+
Sbjct: 137 EIDDTAHAVTIAEQVGYPVMIKASAGGGGKGIRVAWTRQDVEEGFPAVRAEAKASFGDDR 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE++++    +   V+GD   +V  +   +        K             +     
Sbjct: 197 IFIEKFIESPRHIEIQVLGDKHGNVVHLFERECSIQRRNQK----VIEEAPSPLLDEATR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +   A    +A+        +F      +  ++LE+N 
Sbjct: 253 AAMGAQAVALAKAVNYDSAGTVEF-VAGQDKSFYFLEMNT 291


>gi|16330482|ref|NP_441210.1| cyanophycin synthetase [Synechocystis sp. PCC 6803]
 gi|8134384|sp|P73833|CPHA_SYNY3 RecName: Full=Cyanophycin synthetase; AltName: Full=Cyanophycin
           synthase
 gi|1652973|dbj|BAA17890.1| slr2002 [Synechocystis sp. PCC 6803]
          Length = 873

 Score = 68.2 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 52/121 (42%), Gaps = 4/121 (3%)

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---ISPPYVIKPLKGG 136
           +HSGIL   L+ DK  +K ++   G+PV     +  F    + +      P VIKPL G 
Sbjct: 207 SHSGILGVELACDKEGTKTILQDAGIPVPRGTTIQYFDDLEEAINDVGGYPVVIKPLDGN 266

Query: 137 SSLGIIV-IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195
              GI + ++  +        ++  +    +++E+Y +G +    V+    + V E    
Sbjct: 267 HGRGITINVRHWEEAIAAYDLAAEESKSRSIIVERYYEGSDHRVLVVNGKLVAVAERIPA 326

Query: 196 K 196
            
Sbjct: 327 H 327


>gi|332974637|gb|EGK11554.1| carbamoyl-phosphate synthase, large subunit [Kingella kingae ATCC
           23330]
          Length = 1070

 Score = 68.2 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 87/224 (38%), Gaps = 17/224 (7%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQHLISPPYVIKPL 133
            +    +   +   + D+ R +QV++  G+   P+ +    T  +     I  P V++P 
Sbjct: 652 GVNIIGTSADSIDAAEDRERFQQVLNELGLRQPPNRIARNETEALTLAEEIGYPLVVRPS 711

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEI 192
                  + V+  ++ +   + ++   +    +L++ ++ + IE+    + D    V   
Sbjct: 712 YVLGGRAMQVVHSEEQLQRYMREAVQVSEDSPVLLDFFLNNAIEVDVDCVSDGKEVVIGG 771

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            +   +       +S  ++  + P  + ++I  E++R       A+  +G+    F    
Sbjct: 772 IMQHVEQAGI---HSGDSACSLPPYSLSVEIQDEIRRQTKAMAFALNVKGLMNVQFAV-- 826

Query: 253 LSRKVFWLEIN-----VQPGMTPVSIFPEM---AAY-AGYSFRE 287
               VF LE+N       P ++  +  P     A   AG S +E
Sbjct: 827 QDGVVFVLEVNPRASRTVPFVSKATSVPLAKIGARAMAGISLQE 870



 Score = 65.9 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 50/278 (17%), Positives = 100/278 (35%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +              DV        ++V  ++A  +PD    
Sbjct: 29  SGAQACKALCEEGYKVILVNSNPATIMTDPNIADVTYIEPIMWQTVEKIIAKERPDAILP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      +L    +    +   A   + D+ R K  ++  G+    S +
Sbjct: 89  TMGGQTALNCALDLARNGVLAKYNVELIGATEDAIDKAEDRGRFKDAMAKIGLNTPKSFI 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     + +Q  +  P +I+P       G  +            +    +   +LLIEQ
Sbjct: 149 CHTMNEALRAQEEVGFPTLIRPSFTMGGSGGGIAYNKDEFLAICERGFDASPTHELLIEQ 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            V G  E    V+ D   +   I   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SVLGWKEYEMEVVRDKKDNCIIICSIEN----FDPMGVHTGDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RNASLAVLREIGVDTGGSNVQFAVNPENGEMIVIEMNP 302


>gi|310826995|ref|YP_003959352.1| putative carbamoyl-phosphate synthase large chain [Eubacterium
           limosum KIST612]
 gi|308738729|gb|ADO36389.1| putative carbamoyl-phosphate synthase large chain [Eubacterium
           limosum KIST612]
          Length = 376

 Score = 68.2 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/188 (15%), Positives = 75/188 (39%), Gaps = 16/188 (8%)

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLG 140
            + + ++ LS +K   +    +   P+   +  +  T      ++ P ++KP     S G
Sbjct: 92  GNSMASAELSTNKYAMRCAFKAADDPIPGFMEGDATTRPQDVALTYPLIVKPTDRSGSRG 151

Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFY 200
           +  I+    +   + ++   +   +++IE++V+G E +   +    + V         F 
Sbjct: 152 VTKIEGPDGLEAAIHKALEDSFEKKVMIEEFVEGKEYSVECISYEGIHV---------FL 202

Query: 201 SYELKYSSLNST-----HVLPAKIPLDIYKEVQRLAFLAHQAIGCR-GISRSDFLFDPLS 254
           +   K ++         H+ PA++   +  ++  +   A   +  R G S S+ +    +
Sbjct: 203 ALTEKRTTGAPNFIEKGHLQPAEVTPALRNQIITIVKKALDTLQIRFGASHSEIIIQK-N 261

Query: 255 RKVFWLEI 262
             +  +EI
Sbjct: 262 GVIRIVEI 269


>gi|195952929|ref|YP_002121219.1| Carbamoyl-phosphate synthase L chain ATP-binding [Hydrogenobaculum
           sp. Y04AAS1]
 gi|195932541|gb|ACG57241.1| Carbamoyl-phosphate synthase L chain ATP-binding [Hydrogenobaculum
           sp. Y04AAS1]
          Length = 528

 Score = 68.2 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 34/233 (14%), Positives = 83/233 (35%), Gaps = 19/233 (8%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-ILVNRFTMDS-QHLISPPYV 129
                I    +   +  L+ D+ R   ++   G+      I + +         I  P +
Sbjct: 97  FREKNIQVLGTSPDSIDLAEDRGRFNALMKELGILQPEGGIAITKEEAIKVAKDIGYPVL 156

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDAS-- 186
           ++P        + ++  +  +   L Q+   ++   +LI++Y+ D IE+    + D    
Sbjct: 157 VRPSYVLGGRAMKIVYTESELLDYLEQAVDVSYQRPVLIDKYLNDSIEVDVDALSDGEDV 216

Query: 187 -LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
            +      + ++  +S        ++  + P  +  D+ KE++       +A+  +G+  
Sbjct: 217 LIGAIMEHIEEAGIHS------GDSAASIPPYTLKEDVLKEIREQTIKIAKALKVKGLIN 270

Query: 246 SDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
             F         + LE+N       P ++    +P        S  + L  +V
Sbjct: 271 LQFAI--KDNIPYVLEVNPRASRTVPYVSKSVGYPLAKIATKISLGKRLREIV 321


>gi|118579764|ref|YP_901014.1| pyruvate carboxylase [Pelobacter propionicus DSM 2379]
 gi|118502474|gb|ABK98956.1| pyruvate carboxylase [Pelobacter propionicus DSM 2379]
          Length = 1148

 Score = 68.2 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 47/280 (16%), Positives = 100/280 (35%), Gaps = 32/280 (11%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAG---FKVSQIDVDRSVGLVLAHLKPDLAFNV 57
           +A+     S E ++SL   KA  + L   G    +   + +D  + L L      +    
Sbjct: 33  VAI----YSEEDKLSLHRYKADEAYLIGKGKAPVEAY-LGIDEIIALALK-----VGVEA 82

Query: 58  LHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS---- 110
           +H  +G   E+       E   I +            DK+  +++ ++ GV V P     
Sbjct: 83  IHPGYGFLSENAEFAEKCEANGIVFIGPTGEMQRALGDKVAGRKMATAAGVNVVPGTEDP 142

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQL 166
           I      +        P ++K   GG   G+ V    + +   L+    ++ +      +
Sbjct: 143 IEREEDALKFAKQYGYPIIVKAAAGGGGRGMRVAHNQKELLEGLVAAGSEAKAAFGNAAV 202

Query: 167 LIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIY 224
            +E+Y++    +   V+GD   ++              ++          P+  I  ++ 
Sbjct: 203 FLERYLENPKHIEVQVLGDNYGNLV-----HFFERDCSVQRRHQKVVEFAPSLCITPELR 257

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +E+   A    + +  R     +FL D   R  +++E+N 
Sbjct: 258 EELCDAALKIARQVNYRNAGTVEFLVDQQGR-YYFMEMNP 296


>gi|107023257|ref|YP_621584.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia
           cenocepacia AU 1054]
 gi|116690340|ref|YP_835963.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia
           cenocepacia HI2424]
 gi|123072026|sp|Q1BUU4|PURT_BURCA RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|171855184|sp|A0K993|PURT_BURCH RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|105893446|gb|ABF76611.1| formate-dependent phosphoribosylglycinamide formyltransferase
           [Burkholderia cenocepacia AU 1054]
 gi|116648429|gb|ABK09070.1| formate-dependent phosphoribosylglycinamide formyltransferase
           [Burkholderia cenocepacia HI2424]
          Length = 404

 Score = 68.2 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 51/277 (18%), Positives = 97/277 (35%), Gaps = 38/277 (13%)

Query: 19  GKACASALEDAGFKVSQID----------------VDRSVGLVLAHL----KPDLAFNVL 58
           GK    AL+  G +V  +D                +D +    L  +    +P L    +
Sbjct: 27  GKEVIIALQRLGVEVVAVDRYPDAPGHQVAHRAHVIDMTDPAALRAIVEAERPHLIVPEI 86

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKM-RSKQVVSSCGVPVCPSILVNRFT 117
                 D L  A +E   +        A+ L+M++    +      G+P  P    + F 
Sbjct: 87  EAI-ATDAL--AAIEAAGLAEVIPTARATQLTMNREGIRRLAAEELGLPTSPYAFADSFE 143

Query: 118 MDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH--GDQLLIEQYVD 173
             S  +  I  P V+KP+   S  G  V+K D  +      + +       ++++E +VD
Sbjct: 144 AFSAAVAKIGMPCVVKPVMSSSGKGQSVVKTDADVKPAWDYAMAGGRVNHGRVIVEGFVD 203

Query: 174 ----GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
                 +LT   +  A+LD                 Y         P  +     ++ + 
Sbjct: 204 FDYEITQLTVRAIDPATLDTRTYFCEPVGHVQVAGDY----VESWQPQPMSAVALEKSRE 259

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
           +A    +A+G RG+   +         V++ E++ +P
Sbjct: 260 IAHKVTEALGGRGLFGVELFVR--GDDVWFSEVSPRP 294


>gi|284032243|ref|YP_003382174.1| carbamoyl-phosphate synthase large subunit [Kribbella flavida DSM
           17836]
 gi|283811536|gb|ADB33375.1| carbamoyl-phosphate synthase, large subunit [Kribbella flavida DSM
           17836]
          Length = 1104

 Score = 68.2 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 47/278 (16%), Positives = 98/278 (35%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG      L++ GF+V  +         D +              V  V+   +PD+   
Sbjct: 29  SGTQACRVLKEEGFRVVLVNSNPATIMTDPEFADATYVEPITPEFVEKVIEKERPDVLLA 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G    +  +      +L+   +    + + A     ++   K +V + G  V  S++
Sbjct: 89  TLGGQTALNAAIALHDNGVLDKYGVELIGASVDAIQRGENRESFKAIVETLGAEVARSVV 148

Query: 113 VNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     + +   +  P V++P      +G  +   +  +          +   ++LIE+
Sbjct: 149 CHTMDDVLGAAAEMGYPLVVRPSFTMGGVGSGMAYNELDLRRIAGAGLVASPTTEVLIEE 208

Query: 171 YVDG-IELTCGVMGDASL-DVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            + G  E    VM D +   V   ++   D           +S  V PA  +    Y+ +
Sbjct: 209 SIVGWKEYELEVMRDKADNVVIVCSIENVDPMGVHT----GDSVTVAPAMTLTDREYQTM 264

Query: 228 QRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
           + LA    + +G   G     F  +P   ++  +E+N 
Sbjct: 265 RDLAIGIIREVGVDTGGCNIQFAVNPADGRLIVIEMNP 302



 Score = 56.3 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 30/207 (14%), Positives = 77/207 (37%), Gaps = 15/207 (7%)

Query: 66  GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF--TMDSQHL 123
           GL Q + +   +P   +   A  L+ ++    +V++   +P         F    +    
Sbjct: 647 GLAQRLAD-AGVPIVGTSPQAIHLAEERGAFGKVLAEASLPAPKHGTAMSFGEAQEIAAE 705

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQLLIEQYV-DGIELT 178
           I  P +++P       G+ ++  D  +   L        + +    +LI++++ D +E+ 
Sbjct: 706 IGFPVLVRPSYVLGGRGMEIVYSDAELTAALRRLSGDQLAADWEHPVLIDRFLDDAVEID 765

Query: 179 C-GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
             G+     L +  +     +       +S  +S  + P  +     +++++      + 
Sbjct: 766 VDGLFDGEELFLGGV----MEHIEEAGVHSGDSSCALPPITLGNADIEKIRQSTEAIARG 821

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINV 264
           +G RG+    +        ++ LE N 
Sbjct: 822 VGVRGLLNVQYAL--AGDVLYVLEANP 846


>gi|154487011|ref|ZP_02028418.1| hypothetical protein BIFADO_00849 [Bifidobacterium adolescentis
           L2-32]
 gi|154084874|gb|EDN83919.1| hypothetical protein BIFADO_00849 [Bifidobacterium adolescentis
           L2-32]
          Length = 1126

 Score = 68.2 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 44/288 (15%), Positives = 102/288 (35%), Gaps = 36/288 (12%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQIDVDRS---------------------VGLV 45
           G ++E + S   G      L + G +V  ++ + +                     +  +
Sbjct: 21  GQAAEFDYS---GTQACRVLREEGIRVILVNSNPATIMTDPEMADATYIEPISTPILEQI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +A  +PD     L G    +  +      +L+   +    + + A     D+   K+VV 
Sbjct: 78  IAKERPDALLPTLGGQTALNAAMALGEAGVLKKYNVELIGASLDAIDRGEDRELFKKVVE 137

Query: 102 SCGVPVCPSILVNRFTMDS--QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G     S + +              P V++P      LG  +   +  +         
Sbjct: 138 EAGAESARSDIAHSLEEVDKIAEKFGYPLVVRPSFTMGGLGSGIAHDEDELHRIAGAGIH 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
           ++  D++LIE+ ++G  E    +M D   +V  +   ++      +   + +S  V P  
Sbjct: 198 YSPTDEVLIEEGIEGWKEYELELMRDKKDNVVVVCPIENVD---PVGVHTGDSITVAPVF 254

Query: 219 -IPLDIYKEVQRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
            +    Y++++ +     + +G   G     F  +P + ++  +E+N 
Sbjct: 255 TLTDREYQKLRDIGIAIIRGVGVDTGGCNIQFAVNPGTGRIIVIEMNP 302



 Score = 51.7 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 33/233 (14%), Positives = 75/233 (32%), Gaps = 29/233 (12%)

Query: 67  LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTMDSQHLI 124
            + A L+   +P   +   +  L+ ++    +V+    +        L      ++ H I
Sbjct: 651 SLAARLKAAGVPILGTTPESIDLAENRELFGEVLKKADMNAPRYGTALSLDEAREAAHAI 710

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
             P +++P       G+ ++  D  +   + ++      D +     V G   +  ++  
Sbjct: 711 GYPVLVRPSYVLGGRGMEIVYDDAQLRKYVDRALKEAQADTV-----VSGRLPSPLLIDK 765

Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK--------------IPLDIYKEVQRL 230
              D  EI V     +  E  Y      HV  A               +  D  + ++  
Sbjct: 766 FLQDAVEIDV--DALFDGEELYIGGIMEHVEEAGVHSGDAACTLPPSTLSDDQIRRLREG 823

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283
            +   +  G +G+    + F      ++ +E N +   T     P  +   G 
Sbjct: 824 TYAIAKGCGVQGLINVQYAFMA--NTLYVIEANPRASRT----VPFASKATGV 870


>gi|116754555|ref|YP_843673.1| carbamoyl phosphate synthase large subunit [Methanosaeta
           thermophila PT]
 gi|121694744|sp|A0B8K9|CARB_METTP RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|116666006|gb|ABK15033.1| carbamoyl-phosphate synthase large subunit [Methanosaeta
           thermophila PT]
          Length = 1074

 Score = 68.2 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 47/277 (16%), Positives = 96/277 (34%), Gaps = 36/277 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH--------- 59
           SG     +L + G +V  +         D D +  + +  L P++   ++          
Sbjct: 29  SGSQACKSLREEGVEVVLVNSNPATIMTDPDMADKVYIEPLVPEIVAKIIEKERPDGIIA 88

Query: 60  GNFGEDG-------LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
           G  G+ G           +LE   +    + + +   + D+   K+ +   G PV  SI 
Sbjct: 89  GIGGQTGLNITSELAEMGVLEKYGVEVLGTKVRSIQEAEDRDLFKKAMERIGEPVPRSIA 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           V       ++   +  P +++P       G  V +  + +          +   Q+L+E+
Sbjct: 149 VTSLEEAEEAMKELGLPLIVRPAYTLGGSGGGVARTHEELMRICEMGLKRSRIHQVLLEE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIA-VPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            V G  E+   VM D++     I  +   D            S  V P + +     + +
Sbjct: 209 SVIGWTEVEYEVMRDSNNTCITICNMENMDPMGIHT----GESIVVTPIQTLSDHEIQML 264

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +  A    +A+G  G     F     + +   +E+N 
Sbjct: 265 RSAAINIIRALGIEGGCNIQFAVR--NGEYRVIEVNP 299



 Score = 61.7 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/197 (13%), Positives = 72/197 (36%), Gaps = 19/197 (9%)

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTMDSQHLISPPYVIKPLKGGSS 138
            +   +  ++ D+ R  ++++  G+P   +               I  P +++P      
Sbjct: 658 GTSPDSIDIAEDRERFNKLLNKLGIPQPKAGIAYSPEEAKRVAKEIGYPVLVRPSYVLGG 717

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDAS---LDVTEIAV 194
             + ++  +  + L + ++   +H   +LI+ ++ + +E+    + D     +      +
Sbjct: 718 RAMEIVYDESGLELYMREAVRVSHEHPVLIDDFLQNAVEIDVDAVSDGRDVLIGAIMEHI 777

Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
            ++  +S        ++  + P  +P D+   V+        A+  +GI   +       
Sbjct: 778 EEAGIHS------GDSACMIPPQTLPEDVIATVKDYVRRIALALDVKGI--INIQMAYKD 829

Query: 255 RKVFWLEIN-----VQP 266
             V+ LE N       P
Sbjct: 830 GIVYVLEANPRSSRTIP 846


>gi|308389954|gb|ADO32274.1| carbamoyl phosphate synthase large subunit [Neisseria meningitidis
           alpha710]
          Length = 1071

 Score = 68.2 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/192 (14%), Positives = 72/192 (37%), Gaps = 8/192 (4%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYVIKPL 133
            +    +   +   + D+ R ++V++  G+   P+ + +           I  P V++P 
Sbjct: 652 GVNIIGTSADSIDAAEDRERFQKVLNDLGLRQPPNRIAHNEEEALVKAEEIGYPLVVRPS 711

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEI 192
                  + ++   + +   + ++   +    +L++ ++ + IE+    + D    V   
Sbjct: 712 YVLGGRAMQIVHSAEQLQKYMREAVQVSEDSPVLLDFFLNNAIEVDVDCVSDGKDVVIGG 771

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            +   +       +S  +   + P  +  +I  E++R       A+G  G+    F    
Sbjct: 772 IMQHVEQAGI---HSGDSGCSLPPYSLSEEIQDEIRRQTKAMAYALGVVGLMNVQFAV-- 826

Query: 253 LSRKVFWLEINV 264
               VF LE+N 
Sbjct: 827 QDGVVFVLEVNP 838



 Score = 66.3 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 50/278 (17%), Positives = 101/278 (36%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +              DV        ++V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYKVILVNSNPATIMTDPEMADVTYIEPIMWQTVEKIIAKERPDAILP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      +L    +    +   A   + D+ R K+ +   G+    S +
Sbjct: 89  TMGGQTALNCALDLARNGVLAKYNVELIGATEDAIDKAEDRGRFKEAMEKIGLSCPKSFV 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     + +Q  +  P +I+P       G  +            +    +   +LLIEQ
Sbjct: 149 CHTMNEALAAQEQVGFPTLIRPSFTMGGSGGGIAYNKDEFLAICERGFDASPTHELLIEQ 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            V G  E    V+ D + +   I   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SVLGWKEYEMEVVRDKNDNCIIICSIEN----FDPMGVHTGDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RNASLAVLREIGVDTGGSNVQFAVNPENGEMIVIEMNP 302


>gi|261393196|emb|CAX50815.1| carbamoyl-phosphate synthase large chain (carbamoyl-phosphate
           synthetase ammonia chain) [Neisseria meningitidis 8013]
          Length = 1071

 Score = 68.2 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/192 (14%), Positives = 72/192 (37%), Gaps = 8/192 (4%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYVIKPL 133
            +    +   +   + D+ R ++V++  G+   P+ + +           I  P V++P 
Sbjct: 652 GVNIIGTSADSIDAAEDRERFQKVLNDLGLRQPPNRIAHNEEEALVKAEEIGYPLVVRPS 711

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEI 192
                  + ++   + +   + ++   +    +L++ ++ + IE+    + D    V   
Sbjct: 712 YVLGGRAMQIVHSAEQLQKYMREAVQVSEDSPVLLDFFLNNAIEVDVDCVSDGKDVVIGG 771

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            +   +       +S  +   + P  +  +I  E++R       A+G  G+    F    
Sbjct: 772 IMQHVEQAGI---HSGDSGCSLPPYSLSEEIQDEIRRQTKAMAYALGVVGLMNVQFAV-- 826

Query: 253 LSRKVFWLEINV 264
               VF LE+N 
Sbjct: 827 QDGVVFVLEVNP 838



 Score = 66.3 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 50/278 (17%), Positives = 101/278 (36%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +              DV        ++V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYKVILVNSNPATIMTDPEMADVTYIEPIMWQTVEKIIAKERPDAILP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      +L    +    +   A   + D+ R K+ +   G+    S +
Sbjct: 89  TMGGQTALNCALDLARNGVLAKYNVELIGATEDAIDKAEDRGRFKEAMEKIGLSCPKSFV 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     + +Q  +  P +I+P       G  +            +    +   +LLIEQ
Sbjct: 149 CHTMNEALAAQEQVGFPTLIRPSFTMGGSGGGIAYNKDEFLAICERGFDASPTHELLIEQ 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            V G  E    V+ D + +   I   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SVLGWKEYEMEVVRDKNDNCIIICSIEN----FDPMGVHTGDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RNASLAVLREIGVNTGGSNVQFAVNPENGEMIVIEMNP 302


>gi|228998667|ref|ZP_04158254.1| Carbamoyl-phosphate synthase large chain [Bacillus mycoides
           Rock3-17]
 gi|228761135|gb|EEM10094.1| Carbamoyl-phosphate synthase large chain [Bacillus mycoides
           Rock3-17]
          Length = 1018

 Score = 68.2 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 41/260 (15%), Positives = 96/260 (36%), Gaps = 13/260 (5%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMR 95
             V  ++   +PD     L G  G +  V+     +L+   +    + + A   + D+  
Sbjct: 18  EFVSRIIRKERPDAILPTLGGQTGLNMAVELAKSGVLDECGVEILGTKLSAIEQAEDRDL 77

Query: 96  SKQVVSSCGVPVCPSILVNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153
            + ++     P  PS +++      +    I  P +++P       G  +   ++ +   
Sbjct: 78  FRTLMQELNEPTPPSEIIHTLDEAYEFVKEIGYPVIVRPAFTLGGTGGGICHNEKELIET 137

Query: 154 LLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212
           +      +   Q L+E+ + G  E+   VM D++ +   I V   +       ++  +  
Sbjct: 138 VTSGLKHSPVTQCLLEKSIAGCKEIEYEVMRDSNDNA--IVVCNMENIDPVGVHTGDSIV 195

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
                 +    Y+ ++  +    +A+G  G        DP S + + +E+N  P ++  S
Sbjct: 196 VAPSQTLSDREYQMLRNTSLRIIRALGIEGGCNVQLALDPYSFQYYVIEVN--PRVSRSS 253

Query: 273 IFPEMAAYAGYSFRELLLWM 292
                +   GY   +L   +
Sbjct: 254 --ALASKATGYPIAKLAAKI 271



 Score = 65.9 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 37/283 (13%), Positives = 100/283 (35%), Gaps = 39/283 (13%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ------ 69
           A+++AG++   I         D   S  L    L  +   +++     E  +VQ      
Sbjct: 526 AIKEAGYEAIIINNNPETVSTDFSISDKLYFEPLTIEDVMHIIDLEKPEGVIVQFGGQTA 585

Query: 70  ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHL 123
               A LE   +    + +     + D+ + +  ++  G+P             +     
Sbjct: 586 INLAAKLEEHGVKILGTSLEDLDRAEDRDKFEAALTQLGIPQPVGKTATTVEQAVAIAEE 645

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + ++ + + +   +  +   +    +LI++Y+ G E+    + 
Sbjct: 646 IGYPVLVRPSYVLGGRAMEIVYRQEELLHYMKNAVKVHADHPVLIDRYMVGKEIEVDAIS 705

Query: 184 DAS---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIG 239
           D     +      + ++  +S        +S  V P + +   + +++        + + 
Sbjct: 706 DGENVFIPGIMEHIERAGVHS-------GDSIGVYPPQSLSAKLKEQIIENTIALGRGLN 758

Query: 240 CRGISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277
             G+    F+      +V+ +E+N       P ++ ++  P  
Sbjct: 759 IVGLLNIQFVVFK--DEVYVIEVNPRASRTVPFLSKITGVPMA 799


>gi|74317146|ref|YP_314886.1| carbamoyl-phosphate synthase large subunit [Thiobacillus
           denitrificans ATCC 25259]
 gi|74056641|gb|AAZ97081.1| Carbamoyl-phosphate synthase, large subunit, glutamine-dependent
           [Thiobacillus denitrificans ATCC 25259]
          Length = 1068

 Score = 68.2 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/196 (14%), Positives = 76/196 (38%), Gaps = 8/196 (4%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           LE   +P   +       + D+ R +Q++   G+   P+         +     I  P V
Sbjct: 648 LERNGVPIIGTSPDMIDAAEDRERFQQMLHDLGLKQPPNRTARDPESALRMAAEIGYPLV 707

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + +++++  +   + ++   ++   +L+++++ D IE+    + D    
Sbjct: 708 VRPSYVLGGRAMEIVREEADLVRYMTEAVKVSNKSPVLLDRFLNDAIEVDVDALSDGEQV 767

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           V    +   +       +S  ++  + P  +   +  E++R      +A+   G+    F
Sbjct: 768 VIGGIMQHIEQAGV---HSGDSACSLPPYSLADALQDELRRQTVAMAKALKVVGLMNVQF 824

Query: 249 LFDPLSRKVFWLEINV 264
                   V+ LE+N 
Sbjct: 825 AI--QGDTVYVLEVNP 838



 Score = 65.1 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 48/278 (17%), Positives = 96/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVDRS------------VGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +         D D +            V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYKVILVNSNPATIMTDPDMADVTYIEPISWQIVEKIIAKERPDALLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      +LE   +    +   A   + D+ + K  ++  G+    S +
Sbjct: 89  TMGGQTALNCALDLAKHGVLEKYGVEMIGASKDAIDKAEDREKFKAAMTKLGLGSARSAI 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     +  Q  +  P +I+P       G  +            +    +   +LLIE+
Sbjct: 149 AHSMEEALQVQAALGFPTIIRPSFTMGGSGGGIAYNKDEFVAICERGLEASPTHELLIEE 208

Query: 171 YVDG-IELTCGVMGD-ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D     +   ++   D           +S  V PA+ +    Y+ +
Sbjct: 209 SLLGWKEYEMEVVRDSKDNCIIVCSIENFDPMGVHT----GDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P   ++  +E+N 
Sbjct: 265 RNASLAVLREIGVDTGGSNVQFAINPDDGRMVVIEMNP 302


>gi|15675594|ref|NP_269768.1| acetyl-CoA carboxylase biotin carboxylase subunit [Streptococcus
           pyogenes M1 GAS]
 gi|71911299|ref|YP_282849.1| acetyl-CoA carboxylase biotin carboxylase subunit [Streptococcus
           pyogenes MGAS5005]
 gi|209559862|ref|YP_002286334.1| acetyl-CoA carboxylase biotin carboxylase subunit [Streptococcus
           pyogenes NZ131]
 gi|13622800|gb|AAK34489.1| putative acetyl-CoA carboxylase biotin carboxylase subunit
           [Streptococcus pyogenes M1 GAS]
 gi|71854081|gb|AAZ52104.1| biotin carboxylase [Streptococcus pyogenes MGAS5005]
 gi|209541063|gb|ACI61639.1| Biotin carboxylase of acetyl-CoA carboxylase [Streptococcus
           pyogenes NZ131]
          Length = 454

 Score = 68.2 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 79/220 (35%), Gaps = 16/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  FG   E+     + E + I +            DK+ ++  +   GVPV P    
Sbjct: 77  AIHPGFGFLSENSKFATMCEEMNIKFIGPSASVMDKMGDKINARSEMIKAGVPVIPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG----DQ 165
            +   +  +   + I  P ++K   GG   GI  ++ +  +      +S    G      
Sbjct: 137 EVYNAQEALAIANKIGYPVMLKASAGGGGKGIRKVETEADLEAAFNAASQEALGAFGNGA 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+ +     +   ++GDA  ++  +            K             I   + 
Sbjct: 197 MYLEKVIYPARHIEVQILGDAYGNIIHLGERDCSLQRNNQKVL----EESPSIAIGNTLR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            E+ + A  A +A+        +FL D  S K +++E+N 
Sbjct: 253 HEMGQAAVRAAEAVAYENAGTIEFLLDEDSEKFYFMEMNT 292


>gi|56477545|ref|YP_159134.1| propionyl-CoA carboxylase, alpha subunit [Aromatoleum aromaticum
           EbN1]
 gi|56313588|emb|CAI08233.1| Propionyl-CoA carboxylase, alpha subunit [Aromatoleum aromaticum
           EbN1]
          Length = 666

 Score = 68.2 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 41/221 (18%), Positives = 75/221 (33%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H  +G   E+      LE   I +      +     DK+ SK++     V   P    
Sbjct: 77  AVHPGYGFLSENAEFSRRLEEEGIVFIGPKHYSVGQMGDKIASKKLAKEARVNTIPGYAD 136

Query: 113 ---VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGD 164
                   ++    I  P +IK   GG   G+ V   DQ              +++   D
Sbjct: 137 AIDTAEQAVEIAKGIGYPVMIKASAGGGGKGLRVAFSDQECFEGFTSCRNEAKTAFG-DD 195

Query: 165 QLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           ++LIE+YV +   +   V+GDA  +V  +   +        K             +    
Sbjct: 196 RILIEKYVLEPRHIEIQVLGDAHGNVVYLHERECSIQRRHQK----VIEEAPSPFLDPVT 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +   A    +A+  +     +F      R  ++LE+N 
Sbjct: 252 RRAMGEQAVALAKAVQYQSAGTVEF-VVGADRSFYFLEMNT 291


>gi|325143751|gb|EGC66068.1| carbamoyl-phosphate synthase, large subunit [Neisseria meningitidis
           M01-240013]
          Length = 1071

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/192 (14%), Positives = 72/192 (37%), Gaps = 8/192 (4%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYVIKPL 133
            +    +   +   + D+ R ++V++  G+   P+ + +           I  P V++P 
Sbjct: 652 GVNIIGTSADSIDAAEDRERFQKVLNDLGLRQPPNRIAHNEEEALVKAEEIGYPLVVRPS 711

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEI 192
                  + ++   + +   + ++   +    +L++ ++ + IE+    + D    V   
Sbjct: 712 YVLGGRAMQIVHSAEQLQKYMREAVQVSEDSPVLLDFFLNNAIEVDVDCVSDGKDVVIGG 771

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            +   +       +S  +   + P  +  +I  E++R       A+G  G+    F    
Sbjct: 772 IMQHVEQAGI---HSGDSGCSLPPYSLSEEIQDEIRRQTKAMAYALGVVGLMNVQFAV-- 826

Query: 253 LSRKVFWLEINV 264
               VF LE+N 
Sbjct: 827 QDGVVFVLEVNP 838



 Score = 66.3 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 50/278 (17%), Positives = 101/278 (36%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +              DV        ++V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYKVILVNSNPATIMTDPEMADVTYIEPIMWQTVEKIIAKERPDAILP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      +L    +    +   A   + D+ R K+ +   G+    S +
Sbjct: 89  TMGGQTALNCALDLARNGVLAKYNVELIGATEDAIDKAEDRGRFKEAMEKIGLSCPKSFV 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     + +Q  +  P +I+P       G  +            +    +   +LLIEQ
Sbjct: 149 CHTMNEALAAQEQVGFPTLIRPSFTMGGSGGGIAYNKDEFLAICERGFDASPTHELLIEQ 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            V G  E    V+ D + +   I   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SVLGWKEYEMEVVRDKNDNCIIICSIEN----FDPMGVHTGDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RNASLAVLREIGVDTGGSNVQFAVNPENGEMIVIEMNP 302


>gi|319409827|emb|CBY90135.1| carbamoyl-phosphate synthase large chain (carbamoyl-phosphate
           synthetase ammonia chain) [Neisseria meningitidis WUE
           2594]
          Length = 1071

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/192 (14%), Positives = 72/192 (37%), Gaps = 8/192 (4%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYVIKPL 133
            +    +   +   + D+ R ++V++  G+   P+ + +           I  P V++P 
Sbjct: 652 GVNIIGTSADSIDAAEDRERFQKVLNDLGLRQPPNRIAHNEEEALVKAEEIGYPLVVRPS 711

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEI 192
                  + ++   + +   + ++   +    +L++ ++ + IE+    + D    V   
Sbjct: 712 YVLGGRAMQIVHSAEQLQKYMREAVQVSEDSPVLLDFFLNNAIEVDVDCVSDGKDVVIGG 771

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            +   +       +S  +   + P  +  +I  E++R       A+G  G+    F    
Sbjct: 772 IMQHVEQAGI---HSGDSGCSLPPYSLSEEIQDEIRRQTKAMAYALGVVGLMNVQFAV-- 826

Query: 253 LSRKVFWLEINV 264
               VF LE+N 
Sbjct: 827 QDGVVFVLEVNP 838



 Score = 66.3 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 50/278 (17%), Positives = 101/278 (36%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +              DV        ++V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYKVILVNSNPATIMTDPEMADVTYIEPIMWQTVEKIIAKERPDAILP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      +L    +    +   A   + D+ R K+ +   G+    S +
Sbjct: 89  TMGGQTALNCALDLARNGVLAKYNVELIGATEDAIDKAEDRGRFKEAMEKIGLSCPKSFV 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     + +Q  +  P +I+P       G  +            +    +   +LLIEQ
Sbjct: 149 CHTMNEALAAQEQVGFPTLIRPSFTMGGSGGGIAYNKDEFLAICERGFDASPTHELLIEQ 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            V G  E    V+ D + +   I   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SVLGWKEYEMEVVRDKNDNCIIICSIEN----FDPMGVHTGDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RNASLAVLREIGVDTGGSNVQFAVNPENGEMIVIEMNP 302


>gi|254823452|ref|ZP_05228453.1| carbamoyl-phosphate synthase L subunit [Mycobacterium
           intracellulare ATCC 13950]
          Length = 662

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 41/214 (19%), Positives = 84/214 (39%), Gaps = 19/214 (8%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
           +G   E+    A ++   + +    + A      K+ +K++++S GVPV     ++    
Sbjct: 79  YGFLSENADFAAAVQHAGLTWIGPPVDAVRAMGSKIEAKKLMASAGVPV-----LDELDP 133

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQLLIEQYV-D 173
           D+      P ++K   GG   G+ V+++  ++P ++  +            +  E+Y+  
Sbjct: 134 DTVTQAQLPVLVKASAGGGGRGMRVVRELSALPAEVEAARREAQSAFGDPTVFCERYLPT 193

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI---PLDIYKEVQRL 230
           G  +   VM D    V  +   +        K          P+ +      +  ++   
Sbjct: 194 GHHIEVQVMADTHGTVWAVGERECSIQRRHQK-----IIEEAPSPLVERTPGMRAKLFDA 248

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           A LA  AIG  G    +FL D    + ++LE+N 
Sbjct: 249 ARLAAGAIGYTGAGTVEFLAD-DDGEFYFLEMNT 281


>gi|240079943|ref|ZP_04724486.1| carbamoyl phosphate synthase large subunit [Neisseria gonorrhoeae
           FA19]
 gi|268596082|ref|ZP_06130249.1| carbamoyl phosphate synthase large subunit [Neisseria gonorrhoeae
           FA19]
 gi|268549870|gb|EEZ44889.1| carbamoyl phosphate synthase large subunit [Neisseria gonorrhoeae
           FA19]
          Length = 1071

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/192 (14%), Positives = 72/192 (37%), Gaps = 8/192 (4%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYVIKPL 133
            +    +   +   + D+ R ++V++  G+   P+ + +           I  P V++P 
Sbjct: 652 GVNIIGTSADSIDAAEDRERFQKVLNDLGLRQPPNRIAHNEEEALVKAEEIGYPLVVRPS 711

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEI 192
                  + ++   + +   + ++   +    +L++ ++ + IE+    + D    V   
Sbjct: 712 YVLGGRAMQIVHSAEQLQKYMREAVQVSEDSPVLLDFFLNNAIEVDVDCVSDGKDVVIGG 771

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            +   +       +S  +   + P  +  +I  E++R       A+G  G+    F    
Sbjct: 772 IMQHVEQAGI---HSGDSGCSLPPYSLSEEIQDEIRRQTKAMAYALGVVGLMNVQFAV-- 826

Query: 253 LSRKVFWLEINV 264
               VF LE+N 
Sbjct: 827 QDGVVFVLEVNP 838



 Score = 67.5 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 50/278 (17%), Positives = 101/278 (36%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +              DV        ++V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYKVILVNSNPATIMTDPEMADVTYIEPIMWQTVEKIIAKERPDAILP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      +L    +    +   A   + D+ R K+ +   G+    S +
Sbjct: 89  TMGGQTALNCALDLARNGVLAKYNVELIGATEDAIDKAEDRGRFKEAMEKIGLSCPKSFV 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     + +Q  +  P +I+P       G  +            +    +   +LLIEQ
Sbjct: 149 CHTMNEALAAQEQVGFPTLIRPSFTMGGSGGGIAYNKDEFLAICERGFDASPTHELLIEQ 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            V G  E    V+ D + +   I   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SVLGWKEYEMEVVRDKADNCIIICSIEN----FDPMGVHTGDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RNASLAVLREIGVDTGGSNVQFAVNPENGEMIVIEMNP 302


>gi|240013361|ref|ZP_04720274.1| carbamoyl phosphate synthase large subunit [Neisseria gonorrhoeae
           DGI18]
 gi|240120434|ref|ZP_04733396.1| carbamoyl phosphate synthase large subunit [Neisseria gonorrhoeae
           PID24-1]
          Length = 1071

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/192 (14%), Positives = 72/192 (37%), Gaps = 8/192 (4%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYVIKPL 133
            +    +   +   + D+ R ++V++  G+   P+ + +           I  P V++P 
Sbjct: 652 GVNIIGTSADSIDAAEDRERFQKVLNDLGLRQPPNRIAHNEEEALVKAEEIGYPLVVRPS 711

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEI 192
                  + ++   + +   + ++   +    +L++ ++ + IE+    + D    V   
Sbjct: 712 YVLGGRAMQIVHSAEQLQKYMREAVQVSEDSPVLLDFFLNNAIEVDVDCVSDGKDVVIGG 771

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            +   +       +S  +   + P  +  +I  E++R       A+G  G+    F    
Sbjct: 772 IMQHVEQAGI---HSGDSGCSLPPYSLSEEIQDEIRRQTKAMAYALGVVGLMNVQFAV-- 826

Query: 253 LSRKVFWLEINV 264
               VF LE+N 
Sbjct: 827 QDGVVFVLEVNP 838



 Score = 67.5 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 50/278 (17%), Positives = 101/278 (36%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +              DV        ++V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYKVILVNSNPATIMTDPEMADVTYIEPIMWQTVEKIIAKERPDAILP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      +L    +    +   A   + D+ R K+ +   G+    S +
Sbjct: 89  TMGGQTALNCALDLARNGVLAKYNVELIGATEDAIDKAEDRGRFKEAMEKIGLSCPKSFV 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     + +Q  +  P +I+P       G  +            +    +   +LLIEQ
Sbjct: 149 CHTMNEALAAQEQVGFPTLIRPSFTMGGSGGGIAYNKDEFLAICERGFDASPTHELLIEQ 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            V G  E    V+ D + +   I   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SVLGWKEYEMEVVRDKADNCIIICSIEN----FDPMGVHTGDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RNASLAVLREIGVDTGGSNVQFAVNPENGEMIVIEMNP 302


>gi|228992621|ref|ZP_04152547.1| Carbamoyl-phosphate synthase large chain [Bacillus pseudomycoides
           DSM 12442]
 gi|228766953|gb|EEM15590.1| Carbamoyl-phosphate synthase large chain [Bacillus pseudomycoides
           DSM 12442]
          Length = 1018

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 41/260 (15%), Positives = 96/260 (36%), Gaps = 13/260 (5%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMR 95
             V  ++   +PD     L G  G +  V+     +L+   +    + + A   + D+  
Sbjct: 18  EFVSRIIRKERPDAILPTLGGQTGLNMAVELAKSGVLDECGVEILGTKLSAIEQAEDRDL 77

Query: 96  SKQVVSSCGVPVCPSILVNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153
            + ++     P  PS +++      +    I  P +++P       G  +   ++ +   
Sbjct: 78  FRTLMQELNEPTPPSEIIHTLDEAYEFVKEIGYPVIVRPAFTLGGTGGGICHNEKELIET 137

Query: 154 LLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212
           +      +   Q L+E+ + G  E+   VM D++ +   I V   +       ++  +  
Sbjct: 138 VTSGLKHSPVTQCLLEKSIAGCKEIEYEVMRDSNDNA--IVVCNMENIDPVGVHTGDSIV 195

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
                 +    Y+ ++  +    +A+G  G        DP S + + +E+N  P ++  S
Sbjct: 196 VAPSQTLSDREYQMLRNTSLRIIRALGIEGGCNVQLALDPYSFQYYVIEVN--PRVSRSS 253

Query: 273 IFPEMAAYAGYSFRELLLWM 292
                +   GY   +L   +
Sbjct: 254 --ALASKATGYPIAKLAAKI 271



 Score = 65.9 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 37/283 (13%), Positives = 100/283 (35%), Gaps = 39/283 (13%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ------ 69
           A+++AG++   I         D   S  L    L  +   +++     E  +VQ      
Sbjct: 526 AIKEAGYEAIIINNNPETVSTDFSISDKLYFEPLTIEDVMHIIDLEKPEGVIVQFGGQTA 585

Query: 70  ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHL 123
               A LE   +    + +     + D+ + +  ++  G+P             +     
Sbjct: 586 INLAAKLEEHGVKILGTSLEDLDRAEDRDKFEAALTQLGIPQPVGKTATTVEQAVAIAEE 645

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + ++ + + +   +  +   +    +LI++Y+ G E+    + 
Sbjct: 646 IGYPVLVRPSYVLGGRAMEIVYRQEELLHYMKNAVKVHADHPVLIDRYMVGKEIEVDAIS 705

Query: 184 DAS---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIG 239
           D     +      + ++  +S        +S  V P + +   + +++        + + 
Sbjct: 706 DGENVFIPGIMEHIERAGVHS-------GDSIGVYPPQSLSAKLKEQIIENTIALGRGLN 758

Query: 240 CRGISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277
             G+    F+      +V+ +E+N       P ++ ++  P  
Sbjct: 759 IVGLLNIQFVVFK--DEVYVIEVNPRASRTVPFLSKITGVPMA 799


>gi|92114406|ref|YP_574334.1| acetyl-CoA carboxylase, biotin carboxylase [Chromohalobacter
           salexigens DSM 3043]
 gi|91797496|gb|ABE59635.1| acetyl-CoA carboxylase, biotin carboxylase [Chromohalobacter
           salexigens DSM 3043]
          Length = 448

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 37/223 (16%), Positives = 78/223 (34%), Gaps = 22/223 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         +  DK+ +   +   GVP  P    
Sbjct: 77  AIHPGYGFLSENANFAEQVERSGFVFVGPRAETIRMMGDKVSAISAMKKAGVPTVPGSDG 136

Query: 112 LVNRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHG 163
            +     D+       I  P +IK   GG   G+ V+  + S+   +     ++++    
Sbjct: 137 PLPEDNDDAILATAKRIGYPVIIKAAAGGGGRGMRVVHSEGSLLSSVSVTRNEANAAFGD 196

Query: 164 DQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPL 221
             L +E++++    +   V+ D   +   +           L+          PA  +  
Sbjct: 197 GTLYMEKFLENPRHVEVQVLADGQGNAIHLY-----DRDCSLQRRHQKVLEEAPAPHLDP 251

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
               +V +    A   I  RG    +FL+   + + F++E+N 
Sbjct: 252 KARADVLQACVDACNEINYRGAGTFEFLY--ENGEFFFIEMNT 292


>gi|325673904|ref|ZP_08153594.1| phosphoribosylglycinamide formyltransferase 2 [Rhodococcus equi
           ATCC 33707]
 gi|325555169|gb|EGD24841.1| phosphoribosylglycinamide formyltransferase 2 [Rhodococcus equi
           ATCC 33707]
          Length = 404

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 48/273 (17%), Positives = 88/273 (32%), Gaps = 36/273 (13%)

Query: 19  GKACASALEDAGFKVSQID-------------------VDRSVGLVL-AHLKPDLAFNVL 58
           GK    AL+  G +V  +D                    DR   L L    +P      +
Sbjct: 33  GKEVIIALQRLGVEVIAVDRYADAPGHQVAHRAHTVDMGDREQLLRLVEDERPHFVVPEI 92

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKM-RSKQVVSSCGVPVCPSILVNRFT 117
                E     A +E   +        A+ L+M++    +      G+P  P    +   
Sbjct: 93  EAIATE---ALAEVEERGLAVVIPTARATQLTMNREGIRRLAAEELGLPTSPYAFADSLD 149

Query: 118 M--DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL--DLLQSSSWNHGDQLLIEQYVD 173
               +   I  P VIKP+   S  G  V +    +    +   S    +  ++++E +VD
Sbjct: 150 EVRAATERIGFPCVIKPVMSSSGKGQSVARSVDDLENSWEYALSGGRVNKGRVIVEGFVD 209

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
             +    ++   ++D T    P           S        P  +        + +A  
Sbjct: 210 -FDYEITLLTVRAVDGTHFCEPIGHLQD-----SGDYIESWQPQAMSPAALAAARDVAEK 263

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
              A+G RGI   +         V++ E++ +P
Sbjct: 264 VTTALGGRGIFGVELFV--KGDDVYFSEVSPRP 294


>gi|225851023|ref|YP_002731257.1| phosphoribosylglycinamide formyltransferase 2 [Persephonella marina
           EX-H1]
 gi|225646608|gb|ACO04794.1| phosphoribosylglycinamide formyltransferase 2 [Persephonella marina
           EX-H1]
          Length = 392

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 50/287 (17%), Positives = 97/287 (33%), Gaps = 64/287 (22%)

Query: 22  CASALEDAGFKVSQID----------------VDRSVGLVLAHL----KPDLAFNVLHGN 61
              AL   G +V  +D                +D      + ++    KPD     +   
Sbjct: 27  VIEALR-LGIEVIAVDSYQFAPAQQVAQKYYVIDMKNPDQIRNIVYREKPDFIVPEIEAI 85

Query: 62  FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV------VSSCGVPVCPSILVNR 115
              D  V  +LEL +  +T   ++ SA ++ K    ++          G+        + 
Sbjct: 86  ---DTDV--LLELEKEGFT---VVPSAKAV-KYTMNRIGIRRLAAEEVGLKTSAYRFASD 136

Query: 116 FT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD--LLQSSSWNHGDQLLIEQY 171
                 +   I  P V+KP+   S  G  ++++   I       Q ++   G +++IE++
Sbjct: 137 IDTYRKAIQEIGLPAVVKPVMSSSGKGQSIVREKDQIDKAWYYAQENARGKGGEVIIEEF 196

Query: 172 VD----GIELTCGVMGDASL---DVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           +D       LT       +L    +  I V       Y   +         P  +     
Sbjct: 197 IDFDFEITLLTVRTKNQGTLFCEPIGHIQVEG----DYHESW--------QPQPMSETAL 244

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP---GM 268
           +  + +A     A+G  GI   +        +V++ EI+ +P   GM
Sbjct: 245 ERAKEIATKITDALGGYGIFGCELFV--KGDQVWFNEISPRPHDTGM 289


>gi|170098412|ref|XP_001880425.1| carbamoyl-phosphate synthase [Laccaria bicolor S238N-H82]
 gi|164644863|gb|EDR09112.1| carbamoyl-phosphate synthase [Laccaria bicolor S238N-H82]
          Length = 1164

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 59/297 (19%), Positives = 108/297 (36%), Gaps = 43/297 (14%)

Query: 1   MAVLMGGIS----SEREVSLSSGKACASALEDAGF--------------------KVSQI 36
           + V  GG+S     E + S   G     AL + G                     +V  +
Sbjct: 85  VVVGSGGLSIGQAGEFDYS---GSQALKALSEEGVSAVLINPNIATWQTSHELASEVYFL 141

Query: 37  DVDRS-VGLVLAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSM 91
            +    V  VL   +PD       G    +  ++     +LE L +    + I    +S 
Sbjct: 142 PITADYVAYVLEKERPDGILLTFGGQSALNVGIELDRMGVLERLGVKVLGTPIHTLEVSE 201

Query: 92  DKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS 149
           D+    Q +    +PV  S  V+     +++  +I  P +++       LG         
Sbjct: 202 DRDLFVQALKEIDIPVAQSTAVSSVNAALEAAEVIGYPVILRSAFTLGGLGSGFANNPDE 261

Query: 150 IPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASL-DVTEIAVPKSDFYSYELKYS 207
           +  DL  +   +   Q+LIE+ + G  EL   V+ DA+   +    +   D         
Sbjct: 262 LR-DLA-AKGLSLSPQVLIERSMKGWKELEYEVVRDAADNTIICCNMENFDPLGTHT--- 316

Query: 208 SLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
             +S  V P++ +P D Y  ++  A    + +G  G     +  +P SR+   +E+N
Sbjct: 317 -GDSIVVAPSQTLPDDEYHMLRSAALKVIRHLGVVGECNIQYALNPTSREYCVIEVN 372



 Score = 50.9 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/178 (15%), Positives = 67/178 (37%), Gaps = 14/178 (7%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           L+   +    +       + D+ +   V+ S GV     +         +  + ++ P +
Sbjct: 720 LKHNGVNVLGTDPEQIDTAEDRHKFSSVLDSIGVDQPEWVEATSLEAAKEFANKVTYPVL 779

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL----TCGVMGDA 185
           I+P    S   + V+ ++ ++  +L  ++S +    ++I +++DG +          G  
Sbjct: 780 IRPSYVLSGAAMNVVYEEAALEYNLSAAASVSPLHPVVITKFIDGAQEIDIDAVAHKGKL 839

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRG 242
            +      V  +  +S        ++T VLP   +P +    ++ +A     A    G
Sbjct: 840 IVHAVSEHVENAGVHS-------GDATLVLPPFSLPPNDMARLKTIAEKVAAAFKISG 890


>gi|149002647|ref|ZP_01827579.1| carbamoyl phosphate synthase large subunit [Streptococcus
           pneumoniae SP14-BS69]
 gi|147759258|gb|EDK66251.1| carbamoyl phosphate synthase large subunit [Streptococcus
           pneumoniae SP14-BS69]
          Length = 352

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 54/302 (17%), Positives = 114/302 (37%), Gaps = 37/302 (12%)

Query: 20  KACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNVL 58
           +AC S L++ G++V  ++        D+ +                +L    PD     L
Sbjct: 32  QACLS-LKEEGYEVVLVNSNPATIMTDKEIADKVYIEPITLEFVTRILRKEGPDALLPTL 90

Query: 59  HGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
            G  G +  ++     IL+ L +    + + A   + D+   KQ++     P+  S +VN
Sbjct: 91  GGQTGLNMAMELSKNGILDELGVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIVN 150

Query: 115 --RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                +     I  P +++P       G  +   ++ +          +   Q LIE+ +
Sbjct: 151 TVEEAVAFAATIGYPVIVRPAFTLGGTGGGMCANEKELREITENGLKLSPVTQCLIERSI 210

Query: 173 DG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRL 230
            G  E+   VM D++ +   + V   + +   +   + +S    PA+ +     + ++  
Sbjct: 211 AGFKEIEYEVMRDSADNA--LVVCNMENFD-PVGIHTGDSIVFAPAQTMSDYENQMLRDA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    +A+   G        DP S K + +E+N  P ++  S     +   GY   +L  
Sbjct: 268 SLSIIRALKIEGGCNVQLALDPNSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325


>gi|114047890|ref|YP_738440.1| 3-methylcrotonoyl-CoA carboxylase subunit alpha [Shewanella sp.
           MR-7]
 gi|113889332|gb|ABI43383.1| 3-methylcrotonoyl-CoA carboxylase, alpha subunit [Shewanella sp.
           MR-7]
          Length = 679

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 82/221 (37%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       E   I +   G  A      K  +K ++++  VP+ P    
Sbjct: 82  AIHPGYGFLSENADFARKCEAAGIVFVGPGSDAIDAMGSKSAAKAIMTAAQVPLVPGYHG 141

Query: 114 NRFTM----DSQHLISPPYVIKPLKGGSSLGIIVIKKD----QSIPLDLLQSSSWNHGDQ 165
           +  T          I  P +IK   GG   G+ +++ +     +I     +++S    D+
Sbjct: 142 DDQTDATLKAEALKIGFPMLIKAAYGGGGKGMRIVEHEGEIMDAINSARREAASSFGNDK 201

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           LL+E+Y+     +   V  D   +   ++           K          PA  +  ++
Sbjct: 202 LLMERYLRQPRHVEVQVFADTFGNAIYLSDRDCSIQRRHQK-----VVEEAPAPGLSDEL 256

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             ++   A  A +AI   G    +FL D      +++E+N 
Sbjct: 257 RAQMGEAAVAAAKAIDYVGAGTVEFLLDT-DNSFYFMEMNT 296


>gi|332971694|gb|EGK10642.1| carbamoyl-phosphate synthase, large subunit [Desmospora sp. 8437]
          Length = 1070

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 46/286 (16%), Positives = 98/286 (34%), Gaps = 33/286 (11%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI---------DVD------------RSVGLV 45
           G ++E + S   G     AL++ G +V  +         D +             S+  +
Sbjct: 20  GQAAEFDYS---GTQACLALKEEGIRVILVNNNPATIMTDPETADVVYAEPLTVDSLARI 76

Query: 46  LAHLKPDLAFNVLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   +P      + G  G +  V    Q IL+   +    + + A     D+   K+++ 
Sbjct: 77  IERERPQGLLATVGGQTGLNLAVQLQEQGILDKFGVKLLGTPVEAIRRGEDRQAFKEMME 136

Query: 102 SCGVPVCPSILV--NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G PV     V      +     I  P +I+P       G    + +  +     +  +
Sbjct: 137 GIGEPVPEGKTVSTTEEALQFAESIGYPVIIRPAYTLGGFGGGTARDEAELAQVARRGLA 196

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   Q+L+E+ + G  E+   +M D++   T IAV   +       ++  +        
Sbjct: 197 ASPIGQILVEESILGWKEIEYEMMRDSAD--TCIAVCNMENIDPVGVHTGDSIVTAPTQT 254

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +     + +  +A    + +   G     F   P +     +E+N 
Sbjct: 255 LTYGQCRLLHTVACKVIRELQVIGGCNIQFAVHPDTGDYRIIEVNP 300



 Score = 60.1 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 28/204 (13%), Positives = 72/204 (35%), Gaps = 14/204 (6%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           LE  ++    +         D+ R   ++    +P  P    N  +  + +   +  P +
Sbjct: 649 LEEEDLTILGTSADIIDRVEDRHRFYDLLRELEIPHIPGKTANSLQEALQAADHLGYPLL 708

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD--QLLIEQYVDGIELTCGVMGDASL 187
           ++P       G+ V+ + + +   + +           +L++++V+G+E+    + D   
Sbjct: 709 LRPSYVIGGQGMQVVWEKEQLEAAMSRYLRTLPDQAYPILLDRFVEGMEVEVDAVTDGKD 768

Query: 188 DVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
            V    V   +       +S  + + +    +  +  + V        +A+   G+    
Sbjct: 769 LVIPTLVQHVERAGV---HSGDSLSILAAPDLSEEQRETVVDFTGRIARALSHAGLINIQ 825

Query: 248 FLFDPLSRKVFWLEIN-----VQP 266
           F+       V+ LE+N       P
Sbjct: 826 FVV--EGETVYVLEVNPRASRTIP 847


>gi|291550825|emb|CBL27087.1| carbamoyl-phosphate synthase, large subunit [Ruminococcus torques
           L2-14]
          Length = 1067

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/196 (15%), Positives = 72/196 (36%), Gaps = 8/196 (4%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTMDSQHLISPPYV 129
           L  + +P   +       + D+    +++  C +P      +       +  + +  P +
Sbjct: 647 LMKMGVPILGTSAENVDKAEDRELFDEILEECEIPRPTGGTVFTAEEAKEVANRLGYPVL 706

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           ++P       G+ +   D  I   +   +       +L+++Y+ G E+      DA  D 
Sbjct: 707 VRPSYVLGGQGMQIAINDNDIDEFIGIINRIAQDHPILVDKYLQGKEIEV----DAVCDG 762

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           T+I +P    +       S +S  V PA+ +      ++        +++   G+    F
Sbjct: 763 TDILIPGIMEHIERAGIHSGDSISVYPAQSLTEGAKAKIAEYTRRLAKSLHVIGMINIQF 822

Query: 249 LFDPLSRKVFWLEINV 264
           +       V+ +E+N 
Sbjct: 823 IVCGEDD-VYVIEVNP 837



 Score = 59.4 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 44/286 (15%), Positives = 98/286 (34%), Gaps = 33/286 (11%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQID-------VDRSVG--------------LV 45
           G ++E + +   G     +L++ G +V  ++        D+ +                +
Sbjct: 21  GQAAEFDYA---GTQACRSLKEEGIEVVLLNSNPATIMTDKDIADRVYIEPLTIEVVEQL 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   KPD     L G  G +  ++      L+   +    +       + D++  K  + 
Sbjct: 78  IKKEKPDSVLPTLGGQAGLNLAMELEEAGFLKENNVRLIGTTSETIKKAEDRLEFKATME 137

Query: 102 SCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G PV  S++V      +   + I  P V++P       G  +    Q +   L     
Sbjct: 138 KIGEPVAASLVVENVEDGLAFANKIGYPVVLRPAYTLGGSGGGIAHDSQQLVEILENGLR 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   Q+L+E+ + G  E+   VM D + +   I V   +       ++  +        
Sbjct: 198 LSRVGQVLVERCIAGWKEIEYEVMRDGAGN--CITVCNMENIDPVGVHTGDSIVVAPSQT 255

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +    Y+ ++  A      +   G     +   P + +   +E+N 
Sbjct: 256 LGDKEYQMLRTSALNIISELNITGGCNVQYALHPETFEYCVIEVNP 301


>gi|251791400|ref|YP_003006121.1| acetyl-CoA carboxylase, biotin carboxylase [Dickeya zeae Ech1591]
 gi|247540021|gb|ACT08642.1| acetyl-CoA carboxylase, biotin carboxylase [Dickeya zeae Ech1591]
          Length = 447

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 81/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         L  DK+ +   +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAEQVERSGFIFIGPRADTIRLMGDKVSAISAMKKAGVPCVPGSDG 136

Query: 112 -LVNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
            L +    +      I  P +IK   GG   G+ V++ ++ +   +     ++ +  + D
Sbjct: 137 PLGDDMDKNRAIGKRIGYPVIIKASGGGGGRGMRVVRSEKELEQSIAMTRAEAKAAFNND 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+Y++    +   V+ D   +   +A           K          PA  I  D
Sbjct: 197 MVYMEKYLENPRHVEIQVLADGQGNAIYLAERDCSMQRRHQK-----VVEEAPAPGITAD 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + + +      A   I  RG    +FLF   + + +++E+N 
Sbjct: 252 LRRYIGERCAKACVDINYRGAGTFEFLF--ENGEFYFIEMNT 291


>gi|253700925|ref|YP_003022114.1| carbamoyl-phosphate synthase, large subunit [Geobacter sp. M21]
 gi|251775775|gb|ACT18356.1| carbamoyl-phosphate synthase, large subunit [Geobacter sp. M21]
          Length = 1082

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 51/278 (18%), Positives = 105/278 (37%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVDRS------------VGLVLAHLKPDLAFN 56
           SG     AL++ GF+V  +         D D +            +  ++   +PD    
Sbjct: 29  SGTQACKALKEEGFEVVLLNSNPATIMTDPDFADFTYIEPVTPEILAAIIEKERPDALLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G    +  V       LE   +    + + A   + D+   K+ +   G+ V  S L
Sbjct: 89  TLGGQTALNTAVAVAENGTLEKFGVELIGAKLPAIKKAEDRTLFKEAMVKIGLDVPRSGL 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +  +  M+   ++  P +I+P       G  +    +      +     +  D++L+E+
Sbjct: 149 AHNYQEAMEVIKVVGFPAIIRPSFTLGGTGGGIAYNMEEYERMSMAGIEASPTDEILVEE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            + G  E    VM D + +V  I   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYELEVMRDTADNVVIICSIEN----FDAMGVHTGDSITVAPAQTLTDKEYQIL 264

Query: 228 QRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RDASLKIIREIGVDTGGSNIQFGTNPKNGRLIVIEMNP 302



 Score = 64.0 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 28/196 (14%), Positives = 74/196 (37%), Gaps = 8/196 (4%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--QHLISPPYV 129
           LE   +P   +   A   + D+ R ++++    +    +     F         I  P V
Sbjct: 664 LEKAGVPIIGTSPDAIDRAEDRERFQEMLQKLKLRQPENGTARSFEESEVVAERIGYPVV 723

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLD 188
           ++P        + ++    ++   +  +   +    +LI++++D  IE+    + D  + 
Sbjct: 724 VRPSYVLGGRAMEIVYDVDNLRRYMHTAVQASPEHPILIDKFLDEAIEIDVDALCDGQVA 783

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           V    +   +       +S  ++  + P  I  +I +E++R   +    +  +G+    F
Sbjct: 784 VIGGIMEHIEEAGI---HSGDSACSLPPYSISKEIVEEIRRQTKMMALELNVKGLMNVQF 840

Query: 249 LFDPLSRKVFWLEINV 264
                   ++ +E+N 
Sbjct: 841 AV--KGNDIYIIEVNP 854


>gi|167835961|ref|ZP_02462844.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia
           thailandensis MSMB43]
          Length = 510

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 51/277 (18%), Positives = 94/277 (33%), Gaps = 38/277 (13%)

Query: 19  GKACASALEDAGFKVSQID----------------VDRSVGLVLAHL----KPDLAFNVL 58
           GK    AL+  G +V  +D                +D +    L  L    +P L    +
Sbjct: 27  GKEVIIALQRLGVEVIAVDRYPNAPGHQLAHRAHVIDMTDPDALRALVDAERPHLVVPEI 86

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKM-RSKQVVSSCGVPVCPSILVNRFT 117
                 D L  A +E   +        A+ L+M++    +      G+P  P      F 
Sbjct: 87  EAI-ATDAL--AAIEAAGVAEVIPTARATQLTMNREGIRRLAAEELGLPTSPYAFAQSFD 143

Query: 118 M--DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH--GDQLLIEQYV- 172
               +   I  P V+KP+   S  G  V+++D  +      + +       ++++E +V 
Sbjct: 144 AFKAAVAQIGFPCVVKPVMSSSGKGQSVLRRDADVEPAWQYAMAGGRVNHGRVIVEGFVE 203

Query: 173 ---DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
              +  +LT   +  ASLD                 Y         P  +     +  + 
Sbjct: 204 FDYEITQLTVRAIDPASLDTHTYFCEPIGHVQVAGDY----VESWQPQPMSAKALERSRD 259

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
           +A     A+G RGI   +         V++ E++ +P
Sbjct: 260 IAHRVTSALGGRGIFGVELFVR--GDDVWFSEVSPRP 294


>gi|157413412|ref|YP_001484278.1| carbamoyl-phosphate synthase, large subunit [Prochlorococcus
           marinus str. MIT 9215]
 gi|157387987|gb|ABV50692.1| carbamoyl-phosphate synthase, large subunit [Prochlorococcus
           marinus str. MIT 9215]
          Length = 1098

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 56/279 (20%), Positives = 103/279 (36%), Gaps = 36/279 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL +AG+++  I         D D              V  ++   KPD    
Sbjct: 29  SGTQACKALRNAGYEIILINSNPASIMTDPDIANKTYIEPLTSEIVSQIILKEKPDAILP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  V+      L+   I    + + A   + D+   K+ +    V VCPS +
Sbjct: 89  TMGGQTALNLAVKLSESDFLKQNNIELIGADLRAINKAEDRKLFKESMEKINVNVCPSGI 148

Query: 113 ---VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
              ++     S+ + S P +I+P      +G  +    +            +  +Q+LIE
Sbjct: 149 ASDLDEAMEVSKEISSYPLIIRPAFTLGGVGGGIAFNLEEFVELCKSGLEESPSNQILIE 208

Query: 170 QYVDG-IELTCGVMGDASL-DVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKE 226
           + + G  E    VM D +   V   ++   D           +S  V PA+ +    Y+ 
Sbjct: 209 KSLIGWKEYELEVMRDTADNVVIVCSIENLDPMGVHT----GDSITVAPAQTLTDKEYQR 264

Query: 227 VQRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           ++ L+    + +G   G S   F  +P +  V  +E+N 
Sbjct: 265 LRDLSLKIIREVGVETGGSNIQFAINPTNGDVIVIEMNP 303



 Score = 44.0 bits (103), Expect = 0.024,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 84/221 (38%), Gaps = 14/221 (6%)

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVC-PSILVNRFTMD-SQHLISPPYVIKPLKGGSS 138
            +  ++  L+ D+    +++    +      I  N+   +     I  P V++P      
Sbjct: 682 GTSPISIDLAEDREEFTKILEELSIRQPLNGIARNQDEAEIVAKNIGFPLVVRPSYVLGG 741

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKS 197
             + ++K +  +   + ++   +    +L++QY+ + IE+    + D++  V    + + 
Sbjct: 742 RAMEIVKDENELSRYINEAVKVSPDHPILLDQYLNNAIEIDVDALCDSNGSVVIAGLMEH 801

Query: 198 DFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS-- 254
                     S +S   LP   + L   + V++   L  Q +   G+    F     +  
Sbjct: 802 V---EPAGIHSGDSACCLPSISLSLSTIENVRKWTKLIAQRLNVVGLINLQFAVTNTNNK 858

Query: 255 -RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             K+F LE N +   T     P ++   G    +L   +++
Sbjct: 859 ENKLFILEANPRASRT----VPFVSKAIGKPIAKLATQLMQ 895


>gi|148245088|ref|YP_001219782.1| acetyl CoA carboxylase biotin carboxylase subunit [Candidatus
           Vesicomyosocius okutanii HA]
 gi|146326915|dbj|BAF62058.1| acetyl CoA carboxylase biotin carboxylase subunit [Candidatus
           Vesicomyosocius okutanii HA]
          Length = 451

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 79/222 (35%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +            DK+ +   +   GVP  P    
Sbjct: 79  AIHPGYGFLSENADFAQRVEESGFIFIGPRADNIRTMGDKVAAINTMQKSGVPCIPGSNG 138

Query: 112 LVNRFTMDSQHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGD 164
            +      +  L   I  P +IK   GG   G+ V++K+  +   +     ++ ++    
Sbjct: 139 SLTEDAAQNTQLARDIGFPIIIKASNGGGGRGMRVVEKEADLIDSIEMTKTEALNFFGNC 198

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
           ++ IE+++     +   ++ D   +   +            K          PA  I   
Sbjct: 199 KVYIEKFLTKPRHIEIQILADEYGNAIHLGERDCSMQRRHQK-----VVEEAPAPGITPR 253

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +  ++      A +AI  RG    +FLF   + + +++E+N 
Sbjct: 254 LRDKISSACTNACKAISYRGAGTFEFLF--ENNEFYFIEMNT 293


>gi|289704976|ref|ZP_06501391.1| pyruvate carboxylase [Micrococcus luteus SK58]
 gi|289558312|gb|EFD51588.1| pyruvate carboxylase [Micrococcus luteus SK58]
          Length = 1172

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 41/251 (16%), Positives = 88/251 (35%), Gaps = 22/251 (8%)

Query: 28  DAGFKVS-QIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           D G  V   +DVD  +  V      D  +   +G   E+  +        I +       
Sbjct: 75  DEGHPVRAYLDVDE-IIRVAKDAGADAIYPG-YGFLSENAGLARAAAENGITFVGPPADV 132

Query: 87  SALSMDKMRSKQVVSSCGVPVC----PSILVNRFTMDSQHLISPPYVIKPLKGGSSLGII 142
             L+ +K+ + +     G+P      PS  V  + ++    I  P  +K + GG   G+ 
Sbjct: 133 LELTGNKVEALRAAKRAGIPTLASSDPSADV-EWLLEQAEEIGFPIFVKAVAGGGGRGMR 191

Query: 143 VIKKDQS----IPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKS 197
            +++ +     +   + ++ +      + +EQ V     +   ++ D   +V        
Sbjct: 192 RVERREDLRGSLEAAMREADTAFGDPTVFLEQAVLRPRHIEVQILADGEGNVV-----HL 246

Query: 198 DFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS-- 254
                 L+        + PA  +  +I + + R A    + +G       +FL D     
Sbjct: 247 FERDCSLQRRHQKVIEMAPAPNLDEEIRQALHRDAVAFAKEMGYVNAGTVEFLVDTAGER 306

Query: 255 -RKVFWLEINV 264
             +  ++E+N 
Sbjct: 307 AGQHVFIEMNP 317


>gi|171911340|ref|ZP_02926810.1| pyruvate carboxylase [Verrucomicrobium spinosum DSM 4136]
          Length = 1176

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 75/220 (34%), Gaps = 16/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+    A      I +         +  DK  ++ V     VP       
Sbjct: 100 AIHPGYGFLSENPDFAAACAREGIIFIGPDPKVLNMMGDKTAARNVADKLKVPTLQGTHD 159

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP--LDLLQSSSWNH--GDQ 165
            I   +  + +   I  P +IK   GG   G+ V++K + +   LD  Q+ +        
Sbjct: 160 PIDNRKEALSAAKKIGFPLIIKAAFGGGGRGMRVVQKPEELERLLDEAQTEAKRAFGNGA 219

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E++V     +   ++ D   +V  +            K      ++     I  +I 
Sbjct: 220 VFLEKFVGRAKHIEVQILADKHGNVLHLHERDCSVQRRHQKVIEQAPSY----GIDQNII 275

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +   A    + +        ++L D  +   +++E+N 
Sbjct: 276 DGLCASAVNIAREVNYSHAGTVEYLVDVDTGDWYFIEMNP 315


>gi|325141608|gb|EGC64072.1| carbamoyl-phosphate synthase, large subunit [Neisseria meningitidis
           961-5945]
 gi|325197645|gb|ADY93101.1| carbamoyl-phosphate synthase, large subunit [Neisseria meningitidis
           G2136]
          Length = 1071

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/192 (14%), Positives = 72/192 (37%), Gaps = 8/192 (4%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYVIKPL 133
            +    +   +   + D+ R ++V++  G+   P+ + +           I  P V++P 
Sbjct: 652 GVNIIGTSADSIDAAEDRERFQKVLNDLGLRQPPNRIAHNEEEALVKAEEIGYPLVVRPS 711

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEI 192
                  + ++   + +   + ++   +    +L++ ++ + IE+    + D    V   
Sbjct: 712 YVLGGRAMQIVHSAEQLQKYMREAVQVSEDSPVLLDFFLNNAIEVDVDCVSDGKDVVIGG 771

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            +   +       +S  +   + P  +  +I  E++R       A+G  G+    F    
Sbjct: 772 IMQHVEQAGI---HSGDSGCSLPPYSLSEEIQDEIRRQTKAMAYALGVVGLMNVQFAV-- 826

Query: 253 LSRKVFWLEINV 264
               VF LE+N 
Sbjct: 827 QDGVVFVLEVNP 838



 Score = 66.3 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 50/278 (17%), Positives = 101/278 (36%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +              DV        ++V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYKVILVNSNPATIMTDPEMADVTYIEPIMWQTVEKIIAKERPDAILP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      +L    +    +   A   + D+ R K+ +   G+    S +
Sbjct: 89  TMGGQTALNCALDLARNGVLAKYNVELIGATEDAIDKAEDRGRFKEAMEKIGLSCPKSFV 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     + +Q  +  P +I+P       G  +            +    +   +LLIEQ
Sbjct: 149 CHTMNEALAAQEQVGFPTLIRPSFTMGGSGGGIAYNKDEFLAICERGFDASPTHELLIEQ 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            V G  E    V+ D + +   I   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SVLGWKEYEMEVVRDKNDNCIIICSIEN----FDPMGVHTGDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RNASLAVLREIGVDTGGSNVQFAVNPENGEMIVIEMNP 302


>gi|239814065|ref|YP_002942975.1| cyanophycin synthetase [Variovorax paradoxus S110]
 gi|239800642|gb|ACS17709.1| cyanophycin synthetase [Variovorax paradoxus S110]
          Length = 855

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 56/120 (46%), Gaps = 7/120 (5%)

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGS 137
           + SG+  S ++ DK  +KQ++++ GVPV     V+       +   I  P V+KP  G  
Sbjct: 193 STSGVAES-IAQDKELTKQLLNAAGVPVPLGRPVSDAQDGWAAAMEIGLPVVVKPQDGNQ 251

Query: 138 SLGIIV-IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK 196
             G+ V I   + +      ++++    ++++E+++ G +    V+GD  +       P 
Sbjct: 252 GKGVTVNITTQEQLTAAYDSAAAY---GEVMVEKFLPGFDFRLLVVGDRLVAAARRDPPH 308


>gi|238754654|ref|ZP_04616007.1| Biotin carboxylase [Yersinia ruckeri ATCC 29473]
 gi|238707113|gb|EEP99477.1| Biotin carboxylase [Yersinia ruckeri ATCC 29473]
          Length = 449

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 82/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         L  DK+ +   +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAEQVERSGFIFIGPRAETIRLMGDKVSAINAMKKAGVPCVPGSDG 136

Query: 112 LVNRFT---MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
            ++  T         I  P +IK   GG   G+ V++ D+ +   +     ++ +  + D
Sbjct: 137 PLDDDTTQNKAFAKRIGYPVIIKASGGGGGRGMRVVRHDKDLEESINMTRAEAKAAFNND 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+Y++    +   ++ D   +   +A           K          PA  I  D
Sbjct: 197 MVYMEKYLENPRHIEIQILADGQGNAIYLAERDCSMQRRHQK-----VVEEAPAPGITSD 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + + +      A   IG RG    +FL+   + + +++E+N 
Sbjct: 252 MRRYIGERCAKACMEIGYRGAGTFEFLY--ENGEFYFIEMNT 291


>gi|218767563|ref|YP_002342075.1| carbamoyl phosphate synthase large subunit [Neisseria meningitidis
           Z2491]
 gi|22095531|sp|Q9JW02|CARB_NEIMA RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|121051571|emb|CAM07869.1| carbamoyl phosphate synthase large subunit [Neisseria meningitidis
           Z2491]
          Length = 1071

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/192 (14%), Positives = 72/192 (37%), Gaps = 8/192 (4%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYVIKPL 133
            +    +   +   + D+ R ++V++  G+   P+ + +           I  P V++P 
Sbjct: 652 GVNIIGTSADSIDAAEDRERFQKVLNDLGLRQPPNRIAHNEEEALVKAEEIGYPLVVRPS 711

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEI 192
                  + ++   + +   + ++   +    +L++ ++ + IE+    + D    V   
Sbjct: 712 YVLGGRAMQIVHSAEQLQKYMREAVQVSEDSPVLLDFFLNNAIEVDVDCVSDGKDVVIGG 771

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            +   +       +S  +   + P  +  +I  E++R       A+G  G+    F    
Sbjct: 772 IMQHVEQAGI---HSGDSGCSLPPYSLSEEIQDEIRRQTKAMAYALGVVGLMNVQFAV-- 826

Query: 253 LSRKVFWLEINV 264
               VF LE+N 
Sbjct: 827 QDGVVFVLEVNP 838



 Score = 66.3 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 50/278 (17%), Positives = 101/278 (36%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +              DV        ++V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYKVILVNSNPATIMTDPEMADVTYIEPIMWQTVEKIIAKERPDAILP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      +L    +    +   A   + D+ R K+ +   G+    S +
Sbjct: 89  TMGGQTALNCALDLARNGVLAKYNVELIGATEDAIDKAEDRGRFKEAMEKIGLSCPKSFV 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     + +Q  +  P +I+P       G  +            +    +   +LLIEQ
Sbjct: 149 CHTMNEALAAQEQVGFPTLIRPSFTMGGSGGGIAYNKDEFLAICERGFDASPTHELLIEQ 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            V G  E    V+ D + +   I   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SVLGWKEYEMEVVRDKNDNCIIICSIEN----FDPMGVHTGDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RNASLAVLREIGVDTGGSNVQFAVNPENGEMIVIEMNP 302


>gi|99078235|ref|YP_611493.1| acetyl-CoA carboxylase biotin carboxylase subunit [Ruegeria sp.
           TM1040]
 gi|99035373|gb|ABF62231.1| Carbamoyl-phosphate synthase L chain ATP-binding [Ruegeria sp.
           TM1040]
          Length = 458

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 73/220 (33%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E       +E   + +            DK+ ++Q   + GVPV P    
Sbjct: 78  AIHPGYGFLSESPTFVRAVEDAGLIFVGPSADTIERMGDKVAARQAAEAAGVPVVPGSKG 137

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGDQ 165
            +      +     I  P +IK   GG   GI V    Q +    P    ++ +      
Sbjct: 138 RVDTVAEAVAIAEEIGFPVMIKAAAGGGGRGIRVATTAQELKSLAPQAKAEAEAAFGDGG 197

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           L +E+ +     +   ++GD   +       +        K             +     
Sbjct: 198 LYVERAILSPRHIEVQILGDGE-NAVHCFERECSLQRRRQK----VWEEAGADCLDEQTR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +   A    +A+  RG    ++L+D  S + F++E+N 
Sbjct: 253 AALCASAVALAKAVNYRGAGTLEYLYDAASNEFFFIEMNT 292


>gi|296454536|ref|YP_003661679.1| carbamoyl-phosphate synthase large subunit [Bifidobacterium longum
           subsp. longum JDM301]
 gi|296183967|gb|ADH00849.1| carbamoyl-phosphate synthase, large subunit [Bifidobacterium longum
           subsp. longum JDM301]
          Length = 1127

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 44/288 (15%), Positives = 103/288 (35%), Gaps = 36/288 (12%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQIDVDRS---------------------VGLV 45
           G ++E + S   G      L + G +V  ++ + +                     +  +
Sbjct: 21  GQAAEFDYS---GTQACRVLREEGIRVILVNSNPATIMTDPEMADATYIEPIATPILEQI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +A  +PD     L G    +  +      +L+   +    + + A     D+   K+VV 
Sbjct: 78  IAKERPDALLPTLGGQTALNAAMALGEAGVLKKYNVELIGASLEAIDRGEDRELFKKVVD 137

Query: 102 SCGVPVCPSILVNRFTMDS--QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G     S + +              P V++P      LG  +   ++ +         
Sbjct: 138 EAGAESARSDIAHSIEEVDKIAEKFGYPLVVRPSFTMGGLGSGIAHNEEELHRIAGAGIH 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
           ++  D++LIE+ ++G  E    +M D + +V  +   ++      +   + +S  V P  
Sbjct: 198 YSPTDEVLIEEGIEGWKEFELELMRDRNDNVVVVCPIENVD---PVGVHTGDSITVAPCF 254

Query: 219 -IPLDIYKEVQRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
            +    Y++++ +     + +G   G     F   P + ++  +E+N 
Sbjct: 255 TLTDREYQKLRDIGIAIIRGVGVDTGGCNIQFAVHPATGRIIVIEMNP 302



 Score = 53.2 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 34/233 (14%), Positives = 77/233 (33%), Gaps = 29/233 (12%)

Query: 67  LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTMDSQHLI 124
            + A L+   +P   +   +  L+ ++    +V+    +        L     MD+ H I
Sbjct: 651 SLAARLKAAGVPILGTTPESIDLAENRELFGEVLKKAEMNAPRYGTALSLEEAMDAAHRI 710

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
             P +++P       G+ ++  D+ +   + ++ +    D +     V G   +  ++  
Sbjct: 711 GYPVLVRPSYVLGGRGMEIVYDDKQLTKYVDRALAEAKADTV-----VSGRLPSPLLIDK 765

Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK--------------IPLDIYKEVQRL 230
              D  EI V     +  E  Y      HV  A               +  D  + ++  
Sbjct: 766 FLQDAIEIDV--DALFDGEELYIGGIMEHVEEAGVHSGDAACTLPPSTLSDDQIRRLREG 823

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283
            +   +    +G+    + F      ++ +E N +   T     P  +   G 
Sbjct: 824 TYAIAKGCHVQGLINVQYAFMA--NTLYVIEANPRASRT----VPFASKATGV 870


>gi|302896784|ref|XP_003047271.1| hypothetical protein NECHADRAFT_97815 [Nectria haematococca mpVI
           77-13-4]
 gi|256728201|gb|EEU41558.1| hypothetical protein NECHADRAFT_97815 [Nectria haematococca mpVI
           77-13-4]
          Length = 549

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 48/274 (17%), Positives = 92/274 (33%), Gaps = 52/274 (18%)

Query: 23  ASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQA-----ILELLEI 77
              ++ A ++  QID            K D   N + G   ED  V         E L +
Sbjct: 36  HRFIDKANYR-QQID-------AAVAEKFDFYINFMWGQP-ED-EVAGVEATEYFESLNV 85

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCG---VPVCPSILVNRFTMDSQHLISPPYVIKPLK 134
           P+          S  K          G   VP     +     +  + +      I   +
Sbjct: 86  PFIGLRSRILRKS--KTDLYDAARKKGSPPVPSADPDVFPVIFLSDKSI----CFIAEER 139

Query: 135 GGSSLGIIVIKKDQSI---------PLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            G+     V   D  +         PL++  ++ ++  D +++++++ GI+ +  V+   
Sbjct: 140 DGA-----VANIDWQLQPGRKPPTPPLEMKPATVYDLPDDIIVQEFIPGIDYSVVVIEFG 194

Query: 186 SLDV-----------TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
              +           +E A  K  F +++LK+    S  ++       ++  +Q+LA  A
Sbjct: 195 KTPIALNPTIYNYPSSEDASNKYRFLTFDLKFHPELSESLVNRDDDPQLFDTLQKLAVEA 254

Query: 235 HQAIGCRG--ISRSDFLFDPLSRKVFWLEINVQP 266
            Q     G      D    P   K   +E+N  P
Sbjct: 255 FQVNDMAGGSWGNVDIRIKP-DGKPVVIEVNPMP 287


>gi|120402670|ref|YP_952499.1| carbamoyl-phosphate synthase ATP-binding subunit L [Mycobacterium
           vanbaalenii PYR-1]
 gi|119955488|gb|ABM12493.1| biotin carboxyl carrier protein / biotin carboxylase [Mycobacterium
           vanbaalenii PYR-1]
          Length = 600

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 39/223 (17%), Positives = 76/223 (34%), Gaps = 21/223 (9%)

Query: 56  NVLHGNFG---EDGLV-QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           N +H  +G   E+    QA+L+   + +      +     DK+ ++ + +    P+ P  
Sbjct: 83  NAIHPGYGFLSENADFAQAVLD-AGLIWIGPSPQSIRDLGDKVTARHIAARAEAPLVPGT 141

Query: 112 LVNRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL----DLLQSSSWNHG 163
                  D           P  IK   GG   G+ V +  + IP        ++ +    
Sbjct: 142 PDPVKDADEVVAFAKEYGVPVAIKAAFGGGGRGMKVARTIEEIPELFDSATREAVAAFGR 201

Query: 164 DQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPL 221
            +  +E+Y+D    +   V+ D   +V       +      L+          PA  +  
Sbjct: 202 GECFVERYLDKPRHVEAQVIADMHGNVIV-----AGTRDCSLQRRFQKLVEEAPAPFLTD 256

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              KE+   A    +  G  G    ++L       + +LE+N 
Sbjct: 257 AQRKEIHESAKRICKEAGYYGAGTVEYLV-GQDGLISFLEVNT 298


>gi|113970660|ref|YP_734453.1| 3-methylcrotonoyl-CoA carboxylase subunit alpha [Shewanella sp.
           MR-4]
 gi|113885344|gb|ABI39396.1| 3-methylcrotonoyl-CoA carboxylase, alpha subunit [Shewanella sp.
           MR-4]
          Length = 679

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 82/221 (37%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       E   I +   G  A      K  +K ++++  VP+ P    
Sbjct: 82  AIHPGYGFLSENADFARKCEAAGIVFVGPGSDAIDAMGSKSAAKAIMTAAQVPLVPGYHG 141

Query: 114 NRFTM----DSQHLISPPYVIKPLKGGSSLGIIVIKKD----QSIPLDLLQSSSWNHGDQ 165
           +  T          I  P +IK   GG   G+ +++ +     +I     +++S    D+
Sbjct: 142 DDQTDATLKAEALKIGFPMLIKAAYGGGGKGMRIVEHEGEIMDAINSARREAASSFGNDK 201

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           LL+E+Y+     +   V  D   +   ++           K          PA  +  ++
Sbjct: 202 LLMERYLRQPRHVEVQVFADTFGNAIYLSDRDCSIQRRHQK-----VVEEAPAPGLSDEL 256

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             ++   A  A +AI   G    +FL D      +++E+N 
Sbjct: 257 RAQMGEAAVAAAKAIDYVGAGTVEFLLDT-DNSFYFMEMNT 296


>gi|124266216|ref|YP_001020220.1| cyanophycin synthetase [Methylibium petroleiphilum PM1]
 gi|124258991|gb|ABM93985.1| cyanphycin synthetase [Methylibium petroleiphilum PM1]
          Length = 855

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 27/111 (24%), Positives = 48/111 (43%), Gaps = 4/111 (3%)

Query: 88  ALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIK 145
           A++ DK  +K ++ + GVPV    LV            I  P V+KP  G    G+  + 
Sbjct: 200 AIAQDKDLTKTLLRAAGVPVPIGRLVASADEAWAVALEIGLPVVVKPQDGNQGKGVT-VN 258

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK 196
                 LD+   ++   GD +++E+++ G +    V+GD  +       P 
Sbjct: 259 IVDRAHLDVAFKAAAEIGD-VMVEKFLPGSDFRLLVVGDRLVAAARREPPH 308


>gi|303242221|ref|ZP_07328709.1| carbamoyl-phosphate synthase, large subunit [Acetivibrio
           cellulolyticus CD2]
 gi|302590209|gb|EFL59969.1| carbamoyl-phosphate synthase, large subunit [Acetivibrio
           cellulolyticus CD2]
          Length = 1074

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 48/279 (17%), Positives = 99/279 (35%), Gaps = 38/279 (13%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL   G++V  +         D                +  ++   +PD    
Sbjct: 29  SGTQACKALRKLGYQVILVNSNPATIMTDPGMADATYIEPLNVPRLTEIIDKERPDAILP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC---P 109
            L G  G +   +     +L+  ++      + A     D++  K+ +   G+ +    P
Sbjct: 89  NLGGQSGLNLCSELAKAGVLDKYDVKVIGVQLDAIERGEDRIAFKETMKRLGIEMPQSEP 148

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
           +  V     +    +  P VI+P       G  ++   + + +   +  S +   Q+L+E
Sbjct: 149 AYTVEE-AKEIAKKLGFPVVIRPAYTMGGTGGGLVYNMEELEVVAGRGISASMVGQILVE 207

Query: 170 QYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK---IPLDIYK 225
           + V G  EL   V+ D+   +  +   ++                   A    I  ++ +
Sbjct: 208 ESVLGWEELELEVVRDSKNQMITVCFIENI-----DPMGVHTGDSFCSAPMLTISTELQQ 262

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +Q+ A+   +AI   G +   F  DP + +V  +EIN 
Sbjct: 263 RLQKYAYSIVEAIEVIGGTNVQFAHDPKTDRVVIIEINP 301



 Score = 49.3 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 28/194 (14%), Positives = 70/194 (36%), Gaps = 10/194 (5%)

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--QHLISPPYVIKP 132
             +    +   A  L+ D+ R + ++    +P+  S + +         + I  P +++P
Sbjct: 649 AGVKVLGTTTDAIDLAEDRDRFRIMMEKLEIPMPESGMASNMEQAVKIANRIGYPLMVRP 708

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTE 191
                  G+ VI  ++ +   +  +        +LI++++D  +E     + D       
Sbjct: 709 SYVLGGRGMEVIHDEEMLKQYVEAAVDVTPERPILIDKFLDNAVEAEADAISDGKDVFVP 768

Query: 192 IAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
             +   +           +S  V+P   IP      +++      + +   G+   +  +
Sbjct: 769 AVMEHIELAGIHS----GDSACVIPTISIPEKHLVTIRKYTEQIAKELNVIGL--MNMQY 822

Query: 251 DPLSRKVFWLEINV 264
              + KV+ LE N 
Sbjct: 823 AIANDKVYVLEANP 836


>gi|317129273|ref|YP_004095555.1| carbamoyl-phosphate synthase, large subunit [Bacillus
           cellulosilyticus DSM 2522]
 gi|315474221|gb|ADU30824.1| carbamoyl-phosphate synthase, large subunit [Bacillus
           cellulosilyticus DSM 2522]
          Length = 1070

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 59/287 (20%), Positives = 113/287 (39%), Gaps = 35/287 (12%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQID-------VDRSVGL--------------V 45
           G ++E + +   G     AL + G++V  I+        D SV                V
Sbjct: 21  GQAAEFDYA---GTQACQALMEEGYEVILINSNPATIMTDESVADRVYIEPLTVDFVSRV 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   +PD     L G  G +  V+     IL+   +    + + A   + D+   + +++
Sbjct: 78  IRQEQPDGILATLGGQTGLNLAVELSESGILDEYGVELLGTNLEAIQKAEDREMFRSLMN 137

Query: 102 SCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
               PV PS +V      M     I  P +++P       G  ++  ++ +   +L    
Sbjct: 138 ELNEPVPPSDIVQSLDGAMKFVEEIGYPVIVRPAYTLGGTGGGLVYNEEQLREIVLGGLH 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +  +Q LIE+ + G  E+   VM DA+     I V   +     +   + +S  V P++
Sbjct: 198 QSPVNQCLIEKSIAGFKEIEYEVMRDANNQA--IVVCNMENID-PVGIHTGDSIVVAPSQ 254

Query: 219 -IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +    Y+ ++  +    +A+G +G     F  DP S   F +E+N 
Sbjct: 255 TMTDREYQILRNSSLKIIRALGIQGGCNVQFALDPDSENYFIIEVNP 301



 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 36/263 (13%), Positives = 93/263 (35%), Gaps = 28/263 (10%)

Query: 24  SALEDAGFKVSQIDVDRSVGLVLAHLKPDLAF------NVLHGNFGED--GLV------- 68
            A+++AG++   I+ +         +   L F      +V+H    E+  G++       
Sbjct: 579 KAIQEAGYEAIIINNNPETVSTDFQISDKLYFEPLTVEDVMHVILQENPIGVIVQFGGQT 638

Query: 69  ----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--FTMDSQH 122
                A LE   +    + +     + ++ + +Q +    +P             +   +
Sbjct: 639 ALNLAADLEARGVKLLGTSLENMDRAENRDKFEQTLMQLEIPQPEGKTATSVNEAVTIAN 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + ++  +Q +   + ++   N    +LI++Y+ G E+    +
Sbjct: 699 GIGYPVLVRPSYVLGGRAMEIVYNEQDLLKYMDRAVKVNEKHPVLIDRYLTGKEIEVDAI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCR 241
            D    V    +   +           +S  V P+  I   + +++        +     
Sbjct: 759 SDGETVVIPGVMEHIERAGVHS----GDSIAVYPSQNISHQLKQQLIDYTIRLARGFNII 814

Query: 242 GISRSDFLFDPLSRKVFWLEINV 264
           G+    F+      +++ LE+N 
Sbjct: 815 GLLNIQFVIHR--DEIYVLEVNP 835


>gi|256838806|ref|ZP_05544316.1| acetyl-CoA carboxylase, biotin carboxylase [Parabacteroides sp.
           D13]
 gi|256739725|gb|EEU53049.1| acetyl-CoA carboxylase, biotin carboxylase [Parabacteroides sp.
           D13]
          Length = 512

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 41/223 (18%), Positives = 83/223 (37%), Gaps = 23/223 (10%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       +   + +            DK+ +++ + +  VPV P    
Sbjct: 86  AIHPGYGFLSENADFARRCKQEGLIFIGPSAETMEAMGDKIAARKRMIAAEVPVVPGTEQ 145

Query: 114 NRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
              + +        I  P ++K   GG   G+ +I +   +      + S +      D 
Sbjct: 146 PLQSAEEALRVCEEIGFPVMLKASMGGGGKGMRLIHEKGEVVEAYHTARSESLSSFGDDT 205

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK---IPL 221
           + IE++V+    +   ++GD   +V  +       +  E      N   V  +    +  
Sbjct: 206 VYIEKFVEEPHHIEFQILGDNHGNVIHL-------FDRECSVQRRNQKIVEESPSPFLTA 258

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           D+ KE+   A  A +A+   G    +FL D   R  ++LE+N 
Sbjct: 259 DLRKEMGEKAVAAAKAVHYSGAGTIEFLVDK-DRHFYFLEMNT 300


>gi|1055246|gb|AAB00183.1| biotin carboxylase [Bacillus subtilis subsp. subtilis str. 168]
          Length = 448

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 91/221 (41%), Gaps = 18/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     + E + + +      A +    K  +++ +   GVP+ P    
Sbjct: 77  AIHPGYGFLAENADFAELCEEVNVTFVGPSADAISKMGTKDVARETMKQAGVPIVPGSQG 136

Query: 111 ILVNRFTMDS-QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-----SSSWNHGD 164
           I+ N     S  + I  P +IK   GG   GI V + ++ +   +       ++++    
Sbjct: 137 IIENVEEAVSLANEIGYPVIIKATAGGGGKGIRVARTEEELINGIKITQQEAATAFG-NP 195

Query: 165 QLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            + IE+Y++    +   V+ D   +   +            K    + +   PA +  +I
Sbjct: 196 GVYIEKYIEDFRHVEIQVLADNYGNTIHLGERDCSIQRRLQKLLGESPS---PA-LGSEI 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +++   A  A +A+G  G    +F++D   ++ +++E+N 
Sbjct: 252 REQMGDAAVKAAKAVGYTGAGTVEFIYDYNEQRYYFMEMNT 292


>gi|262276862|ref|ZP_06054655.1| carbamoyl-phosphate synthase, large subunit [alpha proteobacterium
           HIMB114]
 gi|262223965|gb|EEY74424.1| carbamoyl-phosphate synthase, large subunit [alpha proteobacterium
           HIMB114]
          Length = 1069

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 48/279 (17%), Positives = 101/279 (36%), Gaps = 37/279 (13%)

Query: 18  SGKACASALEDAGFKVSQI--------------DV-------DRSVGLVLAHLKPDLAFN 56
           SG     AL   G+K+  +              D+       D+ +  ++   KPD    
Sbjct: 29  SGSQACKALRQEGYKIILVNSNPATIMTDPNVADITYIEPINDQVLEEIIKKEKPDAILP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G  G +  +    + IL+   +    +   A   + ++ + K+ ++  G+    S  
Sbjct: 89  TMGGQTGLNAAMSLDQKGILKKYNVELIGANAEAIDNAENREKFKKNMNEIGLESARS-Y 147

Query: 113 VNRFTMDSQHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
           + R   D++     I  P +I+P       G  V   +Q     +      +  +++L+E
Sbjct: 148 ICRNEEDAKEAYKNIGVPSIIRPSFTLGGTGGGVANTEQEFFQIIKNGLDLSPTNEVLVE 207

Query: 170 QYVDG-IELTCGVMGDASL-DVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKE 226
           + + G  E    V+ D     +   ++   D           +S  V PA  +    Y+ 
Sbjct: 208 ESLVGWKEFEMEVVRDKKDNAIIVCSIENLDPMGIHT----GDSITVAPALTLTDKEYQV 263

Query: 227 VQRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           ++  +    + IG   G S   F  +P   ++  +E+N 
Sbjct: 264 MRNASIACLRKIGVETGGSNVQFAINPKDGRMIVIEMNP 302



 Score = 59.0 bits (142), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 28/193 (14%), Positives = 70/193 (36%), Gaps = 10/193 (5%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ--HLISPPYVIKPL 133
             P   + + +   + D+ +  Q+VS   +    S L             I  P VI+P 
Sbjct: 658 GFPILGTQLESIDTAEDREKFNQIVSELNLKQAESGLARGKEEAKTIVEKIGYPIVIRPS 717

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTC-GVMGDASLDVTE 191
                  + ++  D+     + ++   +    +LI++++ D IE+    V     + +  
Sbjct: 718 YVLGGRAMEIVHDDEQFNTYIEEAVQVSGDSPVLIDKFLNDAIEIDVDAVCDGQDVFIAG 777

Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
           I     +   +    S  ++  + P  +   + +E+++      + +   G+    F   
Sbjct: 778 IMEHIEEAGIH----SGDSACCIPPFSLDEKLIQELKQQTTSLAKKLNVIGLINIQFAIR 833

Query: 252 PLSRKVFWLEINV 264
                ++ LE+N 
Sbjct: 834 GSD--IYILEVNP 844


>gi|255012738|ref|ZP_05284864.1| pyruvate carboxylase subunit A [Bacteroides sp. 2_1_7]
 gi|301308028|ref|ZP_07213982.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Bacteroides sp.
           20_3]
 gi|300833498|gb|EFK64114.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Bacteroides sp.
           20_3]
          Length = 503

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 41/223 (18%), Positives = 83/223 (37%), Gaps = 23/223 (10%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       +   + +            DK+ +++ + +  VPV P    
Sbjct: 77  AIHPGYGFLSENADFARRCKQEGLIFIGPSAETMEAMGDKIAARKRMIAAEVPVVPGTEQ 136

Query: 114 NRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
              + +        I  P ++K   GG   G+ +I +   +      + S +      D 
Sbjct: 137 PLQSAEEALRVCEEIGFPVMLKASMGGGGKGMRLIHEKGEVVEAYHTARSESLSSFGDDT 196

Query: 166 LLIEQYVDGIE-LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK---IPL 221
           + IE++V+    +   ++GD   +V  +       +  E      N   V  +    +  
Sbjct: 197 VYIEKFVEEPHHIEFQILGDNHGNVIHL-------FDRECSVQRRNQKIVEESPSPFLTA 249

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           D+ KE+   A  A +A+   G    +FL D   R  ++LE+N 
Sbjct: 250 DLRKEMGEKAVAAAKAVHYSGAGTIEFLVDK-DRHFYFLEMNT 291


>gi|261823075|ref|YP_003261181.1| carbamoyl phosphate synthase large subunit [Pectobacterium wasabiae
           WPP163]
 gi|261607088|gb|ACX89574.1| carbamoyl-phosphate synthase, large subunit [Pectobacterium
           wasabiae WPP163]
          Length = 1074

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 42/278 (15%), Positives = 96/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D +              V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +    Q +L    +    +   A   + D+ R    +   G+    S +
Sbjct: 89  TMGGQTALNCALELERQGVLAEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLDTARSGI 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     +     +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHNMEEALAVAADVGFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTKELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + +   +   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIEN----FDAMGIHTGDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RNASMAVLREIGVETGGSNVQFSVNPKTGRLIVIEMNP 302



 Score = 60.5 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 32/197 (16%), Positives = 77/197 (39%), Gaps = 10/197 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           LE   +P   +   A   + D+ R +Q V+  G+    +  V      ++    I  P V
Sbjct: 654 LEAAGVPVIGTSPDAIDRAEDRERFQQAVNRLGLKQPANATVATIEQAVEKARGIGYPLV 713

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  +  +      + S ++   +L+++++ D IE+    + D    
Sbjct: 714 VRPSYVLGGRAMEIVYDEIDLKRYFQNAVSVSNDAPVLLDRFLDDAIEVDVDAICDGERV 773

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           +    +   +    +    S +S   LPA  +  +I   +++        +  RG+    
Sbjct: 774 LIGGIMEHIE----QAGVHSGDSACSLPAYTLSKEIQDVMRQQVEKLAFELCVRGLMNVQ 829

Query: 248 FLFDPLSRKVFWLEINV 264
           F     + +V+ +E+N 
Sbjct: 830 FAV--KNNEVYLIEVNP 844


>gi|328951075|ref|YP_004368410.1| Phosphoribosylamine--glycine ligase [Marinithermus hydrothermalis
           DSM 14884]
 gi|328451399|gb|AEB12300.1| Phosphoribosylamine--glycine ligase [Marinithermus hydrothermalis
           DSM 14884]
          Length = 422

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 25/214 (11%), Positives = 65/214 (30%), Gaps = 19/214 (8%)

Query: 32  KVSQIDVD-RSVGLVLAHLKPDLAF-----NVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
           ++   D    ++         DL        ++ G       +  +     IP       
Sbjct: 42  EIVPWDGTIHTLADWAEREGIDLVLVGPEAPLVEG-------IADVFSARGIPVFGPLQR 94

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNR--FTMDSQHLISPPYVIKPLKGGSSLGIIV 143
           A+ +   K  +K ++   G+P     + +     ++    +  P V+K     +  G+ V
Sbjct: 95  AAMIEGSKAYAKTLMERYGIPTARYRVFHEPLEALEYIEAVGVPIVVKDSGLAAGKGVTV 154

Query: 144 IKKDQSIPLDLLQSSSW---NHGDQLLIEQYVDGIELTCGVMGDAS-LDVTEIAVPKSDF 199
                     +             ++++E+Y++G E+T   + D   +     +      
Sbjct: 155 ATDLHQAKQAVANILGHPDEAGRGEVVVEEYLEGTEVTVLALTDGETIKPLLPSQDHKRL 214

Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
              +   ++     V P  +       ++R    
Sbjct: 215 LDRDQGPNTGGMGAVCPYPLDAATLDRIEREILR 248


>gi|307261588|ref|ZP_07543256.1| Phosphoribosylglycinamide formyltransferase 2 [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|306868711|gb|EFN00520.1| Phosphoribosylglycinamide formyltransferase 2 [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
          Length = 393

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 55/310 (17%), Positives = 102/310 (32%), Gaps = 58/310 (18%)

Query: 19  GKACASALEDAGFKVSQID--------------------VDRSVGLVLAHLKPDLAFNVL 58
           GK     L+  G +V  +D                       ++  ++   KPD     +
Sbjct: 24  GKEVVIELQRLGVEVIAVDRYENAPAQQVAHRAYTISMLDGEALRALVEQEKPDFIVPEV 83

Query: 59  HGNFGEDGLVQAILELLEIPY-THSGILASALSMDKM-RSKQVVSSCGVPVCPSILVNRF 116
                E      ++EL +  Y       A+ L+M++    +      G+   P   V+  
Sbjct: 84  -----EAIATATLVELEQEGYNVVPTAKATQLTMNREGIRRLAAEELGLKTSPYRFVDNL 138

Query: 117 TMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLD--LLQSSSWNHGDQLLIEQYV 172
               Q +  I  P V+KP+   S  G  VIK +  I       Q      G ++++E ++
Sbjct: 139 EDFKQAISEIGIPCVVKPIMSSSGHGQSVIKSEDQIQQAWDYSQEGGRAGGGRVIVEGFI 198

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYEL----KYSSLNSTHVL-PAKIPLDIYKEV 227
                          ++T++ V   +  S+      +    +      P  +     K  
Sbjct: 199 K-----------FDYEITQLTVRHVNGTSFLAPIGHRQEDGDYRESWQPQAMSELALKRA 247

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP---GMT-----PVSIFPEMAA 279
           Q  A     A+G RGI   +        ++ + E++ +P   GM       +S F   A 
Sbjct: 248 QETAERITTALGGRGIFGVELFV--CGDEIIFNEVSPRPHDTGMVTMASQELSQFALHAR 305

Query: 280 YA-GYSFREL 288
              G    E+
Sbjct: 306 AILGLPIPEI 315


>gi|262044924|ref|ZP_06017966.1| carbamoyl-phosphate synthase [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259037651|gb|EEW38880.1| carbamoyl-phosphate synthase [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 1074

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 42/278 (15%), Positives = 97/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D +              V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +    Q +L    +    +   A   + D+ R    +   G+    S +
Sbjct: 89  TMGGQTALNCALELERQGVLAEFGVTMIGATADAIDKAEDRRRFDIAMKKIGLDTARSGI 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     +     +  P +I+P       G  +    +       +    +  ++LLI++
Sbjct: 149 AHTMEEALAVAADVGFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTNELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + +   +   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIEN----FDAMGIHTGDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RNASMAVLREIGVETGGSNVQFAVNPKNGRLIVIEMNP 302



 Score = 64.0 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 74/197 (37%), Gaps = 10/197 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           LE   +P   +   A   + D+ R +  V    +    +  V      ++    I  P V
Sbjct: 654 LEAAGVPVIGTSPDAIDRAEDRERFQHAVDRLNLKQPANATVTAIEQAVEKAKEIGYPLV 713

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  +Q +      + S ++   +L+++++ D IE+    + D  + 
Sbjct: 714 VRPSYVLGGRAMEIVYDEQDLRRYFQTAVSVSNDAPVLLDRFLDDAIEVDVDAICDGEMV 773

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           +    +   +    +    S +S   LPA  +  +I   ++         +  RG+    
Sbjct: 774 LIGGIMEHIE----QAGVHSGDSACSLPAYTLSKEIQDVMREQVQKLAFELQVRGLMNVQ 829

Query: 248 FLFDPLSRKVFWLEINV 264
           F       +V+ +E+N 
Sbjct: 830 FAV--KDNEVYLIEVNP 844


>gi|302553264|ref|ZP_07305606.1| conserved hypothetical protein [Streptomyces viridochromogenes DSM
           40736]
 gi|302470882|gb|EFL33975.1| conserved hypothetical protein [Streptomyces viridochromogenes DSM
           40736]
          Length = 420

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 43/202 (21%), Positives = 75/202 (37%), Gaps = 24/202 (11%)

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGSS 138
                A   + +K   K+ + + GV    S LV      +D+   I  P VIKP   G S
Sbjct: 100 GLDATAVTNARNKHAMKRALLAGGVRTPRSALVRSEPELLDAVEAIGLPVVIKPYDFGGS 159

Query: 139 LGIIVIKKDQSIPLDLLQS--------SSWNH-GDQLLIEQYVDGIELTCGVMGDASLDV 189
            G+++    +     L +S        +++   GD+ L+E++VD          D     
Sbjct: 160 GGVVLATTREEAIAGLAESKAVIAQYGAAFGILGDKYLVERFVDS--------DDEVSVE 211

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK---EVQRLAFLAHQAIGC-RGISR 245
                 ++   +   KY S        A +          +  LA  A  A+G  RG++ 
Sbjct: 212 VLCGAGRAQVLAVTEKYLSPRPWFAELAHLVPSHRTGDPVLTELAVQACVALGIDRGLAH 271

Query: 246 SDFLFDPLSRKVFWLEINVQPG 267
            +  FD      + +E+  +PG
Sbjct: 272 VEIKFDA-DGTPWVIEVAARPG 292


>gi|253690008|ref|YP_003019198.1| carbamoyl-phosphate synthase, large subunit [Pectobacterium
           carotovorum subsp. carotovorum PC1]
 gi|251756586|gb|ACT14662.1| carbamoyl-phosphate synthase, large subunit [Pectobacterium
           carotovorum subsp. carotovorum PC1]
          Length = 1074

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 42/278 (15%), Positives = 96/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D +              V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +    Q +L    +    +   A   + D+ R    +   G+    S +
Sbjct: 89  TMGGQTALNCALELERQGVLAEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLDTARSGI 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     +     +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHTMEEALAVAADVGFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTKELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + +   +   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIEN----FDAMGIHTGDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RNASMAVLREIGVETGGSNVQFSVNPKTGRLIVIEMNP 302



 Score = 60.5 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 32/197 (16%), Positives = 76/197 (38%), Gaps = 10/197 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           LE   +P   +   A   + D+ R +Q V+  G+    +  V      ++    I  P V
Sbjct: 654 LEAAGVPVIGTSPDAIDRAEDRERFQQAVNRLGLKQPANATVATIEQAVEKARGIGYPLV 713

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  +  +      + S ++   +L+++++ D IE+    + D    
Sbjct: 714 VRPSYVLGGRAMEIVYDEIDLRRYFQTAVSVSNDAPVLLDRFLDDAIEVDVDAICDGERV 773

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           +    +   +    +    S +S   LPA  +  +I   +++        +  RG+    
Sbjct: 774 LIGGIMEHIE----QAGVHSGDSACSLPAYTLSKEIQDVMRQQVEKLAFELCVRGLMNVQ 829

Query: 248 FLFDPLSRKVFWLEINV 264
           F       +V+ +E+N 
Sbjct: 830 FAV--KDNEVYLIEVNP 844


>gi|323341488|ref|ZP_08081729.1| acetyl-CoA carboxylase, biotin carboxylase [Lactobacillus ruminis
           ATCC 25644]
 gi|323091099|gb|EFZ33730.1| acetyl-CoA carboxylase, biotin carboxylase [Lactobacillus ruminis
           ATCC 25644]
          Length = 459

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 80/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---- 109
            +H  FG   E+     + E   I +        +L  +K  ++  +   GVPV P    
Sbjct: 77  AIHPGFGFLSENNRFVEMCESCGITFIGPKSETISLMGNKANARIQMQQSGVPVIPGSEG 136

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS-----SSWNHGD 164
            I       +    +  P ++K   GG   GI  +  ++ +     ++     S++    
Sbjct: 137 FIDNVEEAREIAEKVGYPVLLKAAAGGGGKGIRRVNNEEELTNAYEEARREALSAFG-DS 195

Query: 165 QLLIEQYVDGI-ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLD 222
           ++ +E+ ++ +  +   V  D                  + K    +     P  +   +
Sbjct: 196 RMYLEKIMENVKHIEVQVFRDEFGHSVYFPERDCSIQRNKQKMIEES-----PCSLVTPE 250

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             K++  +A  A  AI  R     +FL D  + + +++E+N 
Sbjct: 251 QRKQLGEIAVRAVDAIDYRNTGTIEFLMDK-NHRFYFMEMNT 291


>gi|62083577|gb|AAX62510.1| D-alanine:D-lactate ligase [Staphylococcus epidermidis]
          Length = 88

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 20/87 (22%), Positives = 40/87 (45%), Gaps = 6/87 (6%)

Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
                  ++ P  +KP + GSS G+  +   + +   +   ++  +  ++LIEQ + G E
Sbjct: 2   DKPEAGALTYPVFVKPARSGSSFGLTKVNGTEELNAAI--EAAGQYDGKILIEQAISGCE 59

Query: 177 LTCGVMGDA----SLDVTEIAVPKSDF 199
           + C VMG+       +V +I +    F
Sbjct: 60  VGCAVMGNEDDLIVGEVDQIRLSHGIF 86


>gi|302340013|ref|YP_003805219.1| carbamoyl-phosphate synthase, large subunit [Spirochaeta
           smaragdinae DSM 11293]
 gi|301637198|gb|ADK82625.1| carbamoyl-phosphate synthase, large subunit [Spirochaeta
           smaragdinae DSM 11293]
          Length = 1076

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 62/325 (19%), Positives = 120/325 (36%), Gaps = 51/325 (15%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G+ V  ++ +                      S+  ++   +PD   +
Sbjct: 29  SGNQAVRALKEEGYHVVLVNPNPATVMTTPGSADAIYLEPLSLESLTAIIERERPDALLS 88

Query: 57  VLHGNFGED--GLVQ--AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  G +    +LE   +    + + +  L+ D+ R K+VV+S G+    S+L
Sbjct: 89  TMGGQTALNLAGELARAGVLERFGVEIIGASMESIDLAEDRGRFKEVVTSLGLESPVSVL 148

Query: 113 VNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
             +    +        P +++P       G  V    + +   L +S   +     L+E+
Sbjct: 149 CRQVHEGLAFAEQAGFPLIVRPSFTLGGKGGGVANSLEELERLLAESLRESPVGTALVEE 208

Query: 171 YVDG-IELTCGVMGDASL-DVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            + G  E    VM D +   V   ++   D           +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWREFELEVMRDKADNAVVVCSIENVDPMGVHT----GDSVTVAPAQTLTEIEYQRM 264

Query: 228 QRLAFLAHQAIG--CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA------ 279
           +  A    +A+G  C G S   F       ++  +E+N  P ++  S     A       
Sbjct: 265 RTAAIDILRAVGVDCGG-SNVQFAMPKDGERMVVIEMN--PRVSRSSALASKATGFPIAR 321

Query: 280 -----YAGYSFRELLLWMV-EDASC 298
                  GY+  E+L  +  + ASC
Sbjct: 322 CSAKLAVGYTLDEVLNEITGKTASC 346



 Score = 49.7 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 27/222 (12%), Positives = 77/222 (34%), Gaps = 16/222 (7%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQHLISPPYV 129
           LE        +   + + +  +     +V   G+    +   +      D+   +  P +
Sbjct: 652 LEAAGANIIGTASSSISRAEGRGSFADLVRKLGLRQPDNRSASTAAGIRDAAADLGYPVL 711

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + +    + +   L           +L+++++ D  E     + D    
Sbjct: 712 LRPSFVLGGRSMYIAYGPEELEAFLETKPPMGASRPILVDRFLEDAFEYDLDAVSDGQSI 771

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPA--KIPLDIYKEVQRLAFLAHQAIGCRGISRS 246
                +   +           +S  V PA  ++P ++++++++ A +  + +   G    
Sbjct: 772 YIGGIMQHIEAAGVHS----GDSAAVFPAWKQLP-EMHRQMRQAALIIARELPIVGFLNI 826

Query: 247 DFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
            F       +++ LE+N +   T     P ++  +G    +L
Sbjct: 827 QFAVR--DGELYLLEVNPRASRT----VPFLSKASGVDLLDL 862


>gi|239929277|ref|ZP_04686230.1| acyl-CoA carboxylase complex A subunit [Streptomyces ghanaensis
           ATCC 14672]
 gi|291437615|ref|ZP_06577005.1| acyl-CoA carboxylase complex A subunit [Streptomyces ghanaensis
           ATCC 14672]
 gi|291340510|gb|EFE67466.1| acyl-CoA carboxylase complex A subunit [Streptomyces ghanaensis
           ATCC 14672]
          Length = 591

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 39/241 (16%), Positives = 78/241 (32%), Gaps = 18/241 (7%)

Query: 34  SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLV-QAILELLEIPYTHSGILASALSMD 92
           S +D+D+ +         D      +G   E+    QA+L+   + +      A     D
Sbjct: 58  SYLDMDKVLTAA-RESGADAVHPG-YGFLSENAAFAQAVLD-AGLIWIGPPPAAIRDLGD 114

Query: 93  KMRSKQVVSSCGVP----VCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQ 148
           K+ ++ +    G P        +      +        P  IK   GG   G+ V +  +
Sbjct: 115 KVAARHIAQRAGAPLVAGTPDPVSGAEEVLAFAEQHGLPIAIKAAFGGGGRGLKVARTRE 174

Query: 149 SIPL----DLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYE 203
            IP      + ++ +     +  +E+Y+D    +    + D   +V  ++          
Sbjct: 175 EIPELYDSAVREAVAAFGRGECFVERYLDRPRHVETQCLADTHGNVVVVSTRDCSLQRRH 234

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            K             +      E+ R +    +  G  G    +FL       V +LE+N
Sbjct: 235 QK----LVEEAPAPFLTEAQTAELYRASKAILREAGYVGAGTVEFLV-GADGTVSFLEVN 289

Query: 264 V 264
            
Sbjct: 290 T 290


>gi|163856170|ref|YP_001630468.1| cyanophycin synthetase [Bordetella petrii DSM 12804]
 gi|163259898|emb|CAP42199.1| cyanophycin synthetase [Bordetella petrii]
          Length = 857

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 54/111 (48%), Gaps = 3/111 (2%)

Query: 88  ALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145
           +++ DK  +K ++ + GVPV     V+  +   D+   +  P VIKP + GS    + + 
Sbjct: 201 SIAQDKDLTKMLLDAAGVPVPRGCSVSDPQAAWDAVRELGGPVVIKP-RDGSQGRGVAVN 259

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK 196
            +    ++    ++ +   ++++E+Y+ G +    V+GD+ +       P+
Sbjct: 260 IETREQVEAAYRAAADISGEVIVERYIPGHDFRLLVVGDSLVAAARRDPPQ 310


>gi|119774294|ref|YP_927034.1| glutathione synthase [Shewanella amazonensis SB2B]
 gi|119766794|gb|ABL99364.1| glutathione synthase [Shewanella amazonensis SB2B]
          Length = 483

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 33/189 (17%), Positives = 71/189 (37%), Gaps = 10/189 (5%)

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI----SPPYVIKPLKGGSS 138
              +     +K+   ++++S  VP   S++        Q  +      P V+K   G  S
Sbjct: 268 DPESIMKCTNKVFLSELLASHKVPAPKSMIFKASDEGWQDTLIAEIGLPAVLKVPDGAFS 327

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKS 197
           LG++ +K+   +  + +    + H   +L ++Y+    +   GV+    +      + + 
Sbjct: 328 LGVVKVKERAQLEAEAM--RIFQHSSLILAQEYLPTEFDWRIGVLNRQPIYACRYYMSRG 385

Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
            +  Y+   S   S+    A     +  +V   A  A   IG       D     ++ K 
Sbjct: 386 HWQIYQHHKSGRVSSGGFDAMDMKSVPGQVVDAAVKAANLIGSGFYG-VD--LKEVNGKA 442

Query: 258 FWLEINVQP 266
           + +E+N  P
Sbjct: 443 YVIEVNDNP 451


>gi|309380009|emb|CBX21420.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 378

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 25/193 (12%), Positives = 69/193 (35%), Gaps = 19/193 (9%)

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP-PYVIKPLKGG-S 137
                   A++ ++++ K  +   G+   P   V +    ++      P ++K    G  
Sbjct: 94  VSPSSDCVAIAQNRIQEKAWIRKAGLQTAPYQAVCKAEDITEASAQFLPGILKTATLGYD 153

Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKS 197
             G I +K    +     +    + G   ++E+ VD             + V    +   
Sbjct: 154 GKGQIRVKTVDELKAAFAE----HGGVDCVLEKMVDLR---------GEISVIVCRLNDE 200

Query: 198 DFYSYE-LKYSSLNSTH---VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
           +  +++  +    N      ++PA++  D+ ++ +++A      +   G+   +      
Sbjct: 201 NVQTFDPAENIHENGILAYSIVPARLSADVQRQARQMAQRLADELDYVGVLAVEMFVVGD 260

Query: 254 SRKVFWLEINVQP 266
           + ++   EI  +P
Sbjct: 261 THELVVNEIAPRP 273


>gi|206560774|ref|YP_002231539.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia
           cenocepacia J2315]
 gi|198036816|emb|CAR52716.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia
           cenocepacia J2315]
          Length = 404

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 51/277 (18%), Positives = 96/277 (34%), Gaps = 38/277 (13%)

Query: 19  GKACASALEDAGFKVSQID----------------VDRSVGLVLAHL----KPDLAFNVL 58
           GK    AL+  G +V  +D                +D +    L  +    +P L    +
Sbjct: 27  GKEVIIALQRLGVEVVAVDRYQDAPGHQVAHRAHVIDMTDPAALRAIVEAERPHLIVPEI 86

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKM-RSKQVVSSCGVPVCPSILVNRFT 117
                 D L  A +E   +        A+ L+M++    +      G+P  P    + F 
Sbjct: 87  EAI-ATDAL--AAIEAAGLAEVIPTARATQLTMNREGIRRLAAEELGLPTSPYAFADSFE 143

Query: 118 MDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH--GDQLLIEQYVD 173
             S  +  I  P V+KP+   S  G  V+K D  +      + +       ++++E +VD
Sbjct: 144 AFSAAVAKIGMPCVVKPVMSSSGKGQSVVKTDADVEPAWDHAMAGGRVNHGRVIVEGFVD 203

Query: 174 ----GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
                 +LT   +  A+LD                 Y         P  +      + + 
Sbjct: 204 FDYEITQLTVRAIDPATLDTRTYFCEPVGHVQVAGDY----VESWQPQPMRAAALAKSRE 259

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
           +A    +A+G RG+   +         V++ E++ +P
Sbjct: 260 IAHKVTEALGGRGMFGVELFVR--GDDVWFSEVSPRP 294


>gi|192362421|ref|YP_001983145.1| carbamoyl phosphate synthase large subunit [Cellvibrio japonicus
           Ueda107]
 gi|190688586|gb|ACE86264.1| carbamoyl-phosphate synthase, large subunit [Cellvibrio japonicus
           Ueda107]
          Length = 1072

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 98/278 (35%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +              D         ++V  ++   +PD+   
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPAMADATYIEPIEWQTVAKIIEKERPDVILP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      +LE   +    +   A   + D+    Q +   G+    + +
Sbjct: 89  TMGGQTALNCALALAKNGVLEKYNVELIGAKEEAINKAEDRNLFDQAMKRIGLECARARI 148

Query: 113 VNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           V+      +       P +I+P       G  +    +       +    +  ++LLI++
Sbjct: 149 VHSMEEAKEVPKEFGFPCIIRPSFTMGGSGGGIAYNWEEFEEICARGLDLSPTNELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + + +   ++   D           +S  V PA+ +    Y+ +
Sbjct: 209 SLLGWKEYEMEVVRDKNDNCIIVCSIENFDPMGVHT----GDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P+  ++  +E+N 
Sbjct: 265 RNASVAVLREIGVETGGSNVQFAVNPVDGRMVVIEMNP 302



 Score = 62.1 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/196 (14%), Positives = 78/196 (39%), Gaps = 8/196 (4%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           LE   +P   +   A   + D+ R +Q++   G+   P+ +V      + +   +  P V
Sbjct: 653 LEAEGVPIIGTSPDAIDKAEDRERFQQMIEKLGLLQPPNAIVRSLEEALVAADQVGYPLV 712

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++ K+  +   +  +   +    +L++ ++ + IE+    + D    
Sbjct: 713 VRPSYVLGGRAMEIVYKEDELRTYMRTAVQVSEDAPVLLDHFLNNAIEVDIDSVSDGKQV 772

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           V    +   +       +S  ++  + P  +P D+  +++ +       +G  G+   + 
Sbjct: 773 VIGGIMQHIEQCGV---HSGDSACSLPPYSLPADVQDDMREIVKKMAIELGVIGL--MNT 827

Query: 249 LFDPLSRKVFWLEINV 264
                  K++ +E+N 
Sbjct: 828 QLAYQDGKIYVIEVNP 843


>gi|303237225|ref|ZP_07323795.1| carbamoyl-phosphate synthase, large subunit [Prevotella disiens
           FB035-09AN]
 gi|302482612|gb|EFL45637.1| carbamoyl-phosphate synthase, large subunit [Prevotella disiens
           FB035-09AN]
          Length = 1074

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 34/264 (12%), Positives = 89/264 (33%), Gaps = 29/264 (10%)

Query: 23  ASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVL-----HGNFGEDG-- 66
            + +   G++   I         D D    L    L  +   +V+     HG     G  
Sbjct: 587 LNTIRKQGYRSIMINYNPETVSTDYDMCDRLYFDELTFERVMDVIDMEVPHGVIVSTGGQ 646

Query: 67  ---LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ-- 121
               +   L+   +P   +       + D+ +   +++  GV       +       +  
Sbjct: 647 IPNNLAMYLDAENVPILGTKAKDIDNAEDRAKFSAMLNEIGVNQPEWRALTSMDDIQEFV 706

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC-- 179
             +  P +++P    S   + V   +  +   L  +++ +    +++ ++++  +     
Sbjct: 707 DRVGFPVLVRPSYVLSGAAMNVCSNNDELERFLKLAANVSEDHPVVVSKFIENAKEIEMD 766

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
            V  D  +    I    S+   +   +S   +    P K+ ++  + V+R++    +A+ 
Sbjct: 767 AVARDGEIMAYAI----SEHIEFAGVHSGDATIQFPPQKLYIETVRRVKRISRQIAKALH 822

Query: 240 CRGISRSDFLFDPLSRKVFWLEIN 263
             G     F+       +  +E N
Sbjct: 823 INGPFNIQFM--ARDNDILVIECN 844



 Score = 58.6 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 49/275 (17%), Positives = 96/275 (34%), Gaps = 34/275 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL + G     I+ + +                     V  V+   +PD    
Sbjct: 28  SGSQALKALREEGVSTVLINPNIATVQTSEGVADQIYYLPVQPYFVERVIEKERPDGILL 87

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
              G    +  V+     ILE   +    + + A   + D+    Q +    V    S  
Sbjct: 88  AFGGQTALNCGVELDRLGILEKYNVKVLGTPVKAIMNTEDRELFVQQLDEIDVKTIKSEA 147

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                   ++   +  P +I+       LG      ++ +    L   +++   Q+L+E+
Sbjct: 148 CENIEEAREAAKRLGYPVIIRAAYALGGLGSGFADNEEELNK--LCEKAFSFSPQVLVEK 205

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQ 228
            + G  E+   V+ D   +   I V   + +   L   +  S  + P++ +    Y +++
Sbjct: 206 SLKGWKEIEYEVVRDQYDN--CITVCNMENFD-PLGIHTGESIVIAPSQTLTNSEYHKLR 262

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
           +LA    + IG  G     + FDP S     +E+N
Sbjct: 263 KLAIKIVRHIGIVGECNVQYAFDPKSEDYRVIEVN 297


>gi|152968622|ref|YP_001333731.1| carbamoyl phosphate synthase large subunit [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|238893017|ref|YP_002917751.1| carbamoyl phosphate synthase large subunit [Klebsiella pneumoniae
           NTUH-K2044]
 gi|330009312|ref|ZP_08306503.1| carbamoyl-phosphate synthase, large subunit [Klebsiella sp. MS
           92-3]
 gi|150953471|gb|ABR75501.1| carbamoyl-phosphate synthase large subunit [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|238545333|dbj|BAH61684.1| carbamoyl-phosphate synthase large subunit [Klebsiella pneumoniae
           subsp. pneumoniae NTUH-K2044]
 gi|238774020|dbj|BAH66517.1| carbamoyl-phosphate synthase large subunit [Klebsiella pneumoniae
           NTUH-K2044]
 gi|238774052|dbj|BAH66548.1| carbamoyl-phosphate synthase large subunit [Klebsiella pneumoniae]
 gi|328534838|gb|EGF61382.1| carbamoyl-phosphate synthase, large subunit [Klebsiella sp. MS
           92-3]
          Length = 1074

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 42/278 (15%), Positives = 97/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D +              V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +    Q +L    +    +   A   + D+ R    +   G+    S +
Sbjct: 89  TMGGQTALNCALELERQGVLAEFGVTMIGATADAIDKAEDRRRFDIAMKKIGLDTARSGI 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     +     +  P +I+P       G  +    +       +    +  ++LLI++
Sbjct: 149 AHTMEEALAVAADVGFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTNELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + +   +   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIEN----FDAMGIHTGDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RNASMAVLREIGVETGGSNVQFAVNPKNGRLIVIEMNP 302



 Score = 62.8 bits (152), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 74/197 (37%), Gaps = 10/197 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           LE   +P   +   A   + D+ R +  V    +    +  V      ++    I  P V
Sbjct: 654 LEAAGVPVIGTSPDAIDRAEDRERFQHAVDRLKLKQPANATVTAIEQAVEKAKEIGYPLV 713

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  +Q +      + S ++   +L+++++ D IE+    + D  + 
Sbjct: 714 VRPSYVLGGRAMEIVYDEQDLRRYFQTAVSVSNDAPVLLDRFLDDAIEVDVDAICDGEMV 773

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           +    +   +    +    S +S   LPA  +  +I   ++         +  RG+    
Sbjct: 774 LIGGIMEHIE----QAGVHSGDSACSLPAYTLSKEIQDVMREQVQKLAFELQVRGLMNVQ 829

Query: 248 FLFDPLSRKVFWLEINV 264
           F       +V+ +E+N 
Sbjct: 830 FAV--KDNEVYLIEVNP 844


>gi|2116977|dbj|BAA20124.1| D-alanine ligase [Clostridium perfringens]
          Length = 45

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 18/39 (46%), Positives = 25/39 (64%)

Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           + LE+N  PGMT  S+FP+ AA    SF ELL  ++E +
Sbjct: 1   YVLEVNTLPGMTKNSLFPKSAAGINMSFEELLDTIIEKS 39


>gi|300813586|ref|ZP_07093917.1| Pyruvate carboxylase subunit A [Peptoniphilus sp. oral taxon 836
           str. F0141]
 gi|300512334|gb|EFK39503.1| Pyruvate carboxylase subunit A [Peptoniphilus sp. oral taxon 836
           str. F0141]
          Length = 459

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/197 (14%), Positives = 67/197 (34%), Gaps = 14/197 (7%)

Query: 77  IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKP 132
           I +            +K  + + +   GVP  P     +      +     IS P ++K 
Sbjct: 100 IKFIGPDPETIKNMGNKSLAIKTMRENGVPTVPGSDGNVKSVEEAIKIAEKISYPLLLKA 159

Query: 133 LKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASL 187
             GG   GI  +   + +    PL  +++ +    D + +E+ ++    +   ++ D   
Sbjct: 160 SSGGGGKGIRRVDSREELVEKFPLVKMEAKASFKDDSIYMEKLIENPRHIEVQILCDDFS 219

Query: 188 DVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           ++  +            K             I   + +++   A  + +A   +     +
Sbjct: 220 NILCLGERNCSIQRENQKMI----EESPSPGISQGLREKLYDAARKSAKACAYKNAGTVE 275

Query: 248 FLFDPLSRKVFWLEINV 264
           FL D      ++LE+N 
Sbjct: 276 FLVDKDEN-FYFLEMNT 291


>gi|295101479|emb|CBK99024.1| carbamoyl-phosphate synthase large subunit [Faecalibacterium
           prausnitzii L2-6]
          Length = 1083

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 52/287 (18%), Positives = 96/287 (33%), Gaps = 35/287 (12%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI---------DVD------------RSVGLV 45
           G ++E + S   G     AL+  G +   +         D D              V  +
Sbjct: 21  GQAAEFDYS---GTQACRALKAEGIETVLLNSNPATIMTDPDVADHVYIEPMTLEVVERI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           L   KPD     L G  G +  ++      L+   I            + D+   K+ + 
Sbjct: 78  LDIEKPDSVLPNLGGQMGLNLSMELARSGYLDRTGIRLLACRPETIDRAEDRELFKETME 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
               P+ PS +V      +     I  P +++P       G  + +    +         
Sbjct: 138 KLHQPIIPSEVVETLEDALACADRIGYPVIVRPAFTMGGTGGGICENKAKLIEIGTNGLR 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   Q+L+E+ + G  E+   VM D   +V  I V   +     +   + +S  V P++
Sbjct: 198 LSPIHQILVEKCIAGWKEIEYEVMRDHKGNV--ITVCNMENLD-PVGIHTGDSVVVAPSQ 254

Query: 219 -IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +    Y+ ++  A      +G  G     F   P S     +E+N 
Sbjct: 255 TLTDHEYQMLRTAALDIITELGIEGGCNCQFALKPDSFDYAVIEVNP 301



 Score = 62.4 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 35/224 (15%), Positives = 82/224 (36%), Gaps = 20/224 (8%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           ++ + +P   +   A   + D+ R  +++  C +P  P   V      + +   I  P +
Sbjct: 656 MDEIGLPILGTPADAIDEAEDRERFDELLERCNIPRAPGRTVFNLEEALAAADEIGLPVL 715

Query: 130 IKPLK-GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS-- 186
           ++P    G    I+   K   I    + +   +    +L+++Y+ G E     + D    
Sbjct: 716 MRPSYVLGGQNMIVAYTKADVIEYMGVITEHVDMDHPVLLDKYIMGTECEVDAICDGENY 775

Query: 187 -LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGIS 244
            +      V ++  +S        +S  V PA+ +       +        + +   G+ 
Sbjct: 776 LIPGIMEQVERTGVHS-------GDSICVYPAQHLTQAEIDTMVDYTGRFARELHVTGL- 827

Query: 245 RSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
             +  +   + KV+ +E+N +   T     P ++   G    +L
Sbjct: 828 -VNVQYAVSNGKVYVIEVNPRSSRT----VPYISKVTGVPMVDL 866


>gi|253582330|ref|ZP_04859553.1| carbamoyl-phosphate synthase subunit large [Fusobacterium varium
           ATCC 27725]
 gi|251835869|gb|EES64407.1| carbamoyl-phosphate synthase subunit large [Fusobacterium varium
           ATCC 27725]
          Length = 1068

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 31/208 (14%), Positives = 78/208 (37%), Gaps = 14/208 (6%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--FTMDSQHLISPPYVIKPL 133
            I    +       + D+ R ++++ +  +       V      ++  + I  P +++P 
Sbjct: 652 GIKVIGTSADKIDEAEDRERFEEMMEALNIARPKGRAVWDISHGIEIANEIKYPVLVRPS 711

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
                 G+ +   + ++   L  S   +  + +LI++Y++GIEL    + D    +    
Sbjct: 712 YVLGGQGMEICHDEYNLVKYLEASFDRDPSNPVLIDKYLNGIELEVDAICDGEDILIPGV 771

Query: 194 VPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
           +   +           +S  + P   +      E+  +     +A+  +G+    F+   
Sbjct: 772 MEHLERAGVHS----GDSITIYPQQNLYEGTEAELLEITKKIAKALEVKGMMNIQFI--A 825

Query: 253 LSRKVFWLEIN-----VQPGMTPVSIFP 275
              K++ +E+N       P ++ VS  P
Sbjct: 826 YEHKLYVIEVNPRSSRTVPYISKVSGVP 853



 Score = 55.9 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 55/287 (19%), Positives = 103/287 (35%), Gaps = 35/287 (12%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQID-------VDRSVGL--------------V 45
           G ++E + S   G      L+  G +V  I+        D++V                V
Sbjct: 20  GQAAEFDYS---GTQACETLKKEGIEVVLINSNPATIMTDKAVADRIYIEPITADFVEKV 76

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +A  +PD     + G    +  V+     IL+   +    + I A     D+   ++ + 
Sbjct: 77  IAKERPDSILAGMGGQTALNMAVELSEKGILKKYGVKVIGTPIEAIKRGEDRELFREAME 136

Query: 102 SCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G P+  S +V            I  P V++P       G       + +   L++  +
Sbjct: 137 KIGEPIIQSKIVENLEDGFKVASEIGYPVVVRPAYTLGGTGGGFAYNPKELEDILMKGLA 196

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   Q+LIE+ + G  E+   V+ D   +   I V   +     +   + +S  V P++
Sbjct: 197 LSRVGQVLIEKSILGWKEIEYEVIRDKDGN--CITVCNMENID-PVGIHTGDSIVVAPSQ 253

Query: 219 -IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +    Y+ ++  A      IG  G     F   P S +   +EIN 
Sbjct: 254 TLSDREYQMLRTSAIKIVNEIGVIGGCNVQFSLHPKSFEYAIIEINP 300


>gi|143360658|sp|Q0CLK1|PYC_ASPTN RecName: Full=Pyruvate carboxylase; AltName: Full=Pyruvic
           carboxylase; Short=PCB
          Length = 1193

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 41/221 (18%), Positives = 83/221 (37%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
           ++H  +G   E+      +E   + +            DK+ ++Q+   C VPV P    
Sbjct: 120 LIHPGYGFLSENADFARKVEKAGMVFVGPTPDTIDSLGDKVSARQLAIRCNVPVVPGTEG 179

Query: 112 LVNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGDQ 165
            V R+            P +IK   GG   G+ V++    +         ++ S      
Sbjct: 180 PVERYEEVKAFTDTYGFPIIIKAAFGGGGRGMRVVRNQADLRDSFERATSEARSAFGNGT 239

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDI 223
           + +E+++D    +   ++GD   +V              ++        V PA  +P D+
Sbjct: 240 VFVERFLDKPKHIEVQLLGDNHGNVV-----HLFERDCSVQRRHQKVVEVAPAKDLPTDV 294

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              +   A    +++  R    ++FL D  +R  +++EIN 
Sbjct: 295 RDRILSDAVKLAKSVNYRNAGTAEFLVDQQNRH-YFIEINP 334


>gi|310287765|ref|YP_003939023.1| carbamoyl-phosphate synthase, large subunit [Bifidobacterium
           bifidum S17]
 gi|311064651|ref|YP_003971376.1| carbamoyl-phosphate synthase large chain [Bifidobacterium bifidum
           PRL2010]
 gi|309251701|gb|ADO53449.1| carbamoyl-phosphate synthase, large subunit [Bifidobacterium
           bifidum S17]
 gi|310866970|gb|ADP36339.1| CarB Carbamoyl-phosphate synthase large chain [Bifidobacterium
           bifidum PRL2010]
          Length = 1126

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 43/288 (14%), Positives = 105/288 (36%), Gaps = 36/288 (12%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQIDVDRS---------------------VGLV 45
           G ++E + S   G      L + G +V  ++ + +                     +  +
Sbjct: 21  GQAAEFDYS---GTQACRVLREEGIRVILVNSNPATIMTDPEMADATYIEPIATPILEQI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +A  +PD     L G    +  +      +L+   +    + + A     D+   K+VV 
Sbjct: 78  IAKERPDALLPTLGGQTALNAAMSLGEAGVLKKYNVELIGASLDAIDRGEDRELFKKVVD 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G     S + +  +        +  P V++P      LG  +   ++ +         
Sbjct: 138 EAGAESARSEVAHSMKEVDAVAAELGYPLVVRPSFTMGGLGSGIAHDEEELHRIAGAGLH 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
           ++  D++L+E+ ++G  E    +M D + +V  +   ++      +   + +S  V P  
Sbjct: 198 YSPTDEVLLEEGIEGWKEFELELMRDRNDNVVVVCPIENVD---PVGVHTGDSITVAPCF 254

Query: 219 -IPLDIYKEVQRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
            +    Y++++ +     + +G   G     F   P + ++  +E+N 
Sbjct: 255 TLTDREYQKLRDIGIAIIRGVGVDTGGCNIQFAVHPDTGRIIVIEMNP 302



 Score = 50.5 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 32/233 (13%), Positives = 75/233 (32%), Gaps = 29/233 (12%)

Query: 67  LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTMDSQHLI 124
            + A L+   +P   +   +  L+ ++    +V+    +        L      ++ H I
Sbjct: 651 SLAARLKAAGVPILGTTPESIDLAENRELFGEVLRREHMNAPRYGTALSLEEAREAAHNI 710

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
             P +++P       G+ ++  D  +   + ++      D +     V G   +  ++  
Sbjct: 711 GYPVLVRPSYVLGGRGMEIVYDDAQLTKYVNRALDEAKADTV-----VSGRLPSPLLIDK 765

Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK--------------IPLDIYKEVQRL 230
              D  EI V     +  E  Y      H+  A               +  D  + ++  
Sbjct: 766 FLQDAIEIDV--DALFDGEELYIGGIMEHIEEAGVHSGDAACTLPPSTLSDDQIRRLREG 823

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283
            +   +  G +G+    + F      ++ +E N +   T     P  +   G 
Sbjct: 824 TYAISKGCGVKGLINVQYAFMA--NTLYVIEANPRASRT----VPFASKATGV 870


>gi|293556689|ref|ZP_06675253.1| acetyl-CoA carboxylase, biotin carboxylase [Enterococcus faecium
           E1039]
 gi|291601151|gb|EFF31439.1| acetyl-CoA carboxylase, biotin carboxylase [Enterococcus faecium
           E1039]
          Length = 459

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 74/220 (33%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  FG   E+    ++ E   I +            +K+ ++Q++    VPV P    
Sbjct: 77  AIHPGFGFLSENSRFASMCEECNITFIGPKSATIDAMGNKINARQLMQEANVPVIPGSTG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGD 164
            +      ++    I  P ++K   GG   GI  ++  + +P          ++++ + D
Sbjct: 137 VLSTVEEALEIADRIGYPVMLKAAAGGGGKGIRKVQSKEELPQHFSSAQQEAAAAFGNDD 196

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             L +       +   ++GD    V  +            K             I     
Sbjct: 197 MYLEKIIYPARHIEVQILGDRFGHVIHLGERDCSLQRNNQKVL----EESPSVVISQTKR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +   A  A +A+        +FL D      +++E+N 
Sbjct: 253 EALGDAAVRAAKAVNYENAGTIEFLMDE-EGDFYFMEMNT 291


>gi|157692933|ref|YP_001487395.1| acetyl-CoA carboxylase biotin carboxylase subunit [Bacillus pumilus
           SAFR-032]
 gi|157681691|gb|ABV62835.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Bacillus
           pumilus SAFR-032]
          Length = 449

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 88/220 (40%), Gaps = 16/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     + E   + +      A +    K  +++ +   GVP+ P    
Sbjct: 77  AIHPGYGFLAENADFAELCEECNVIFVGPTPSAISKMGTKDVARETMKDAGVPIVPGSQG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL---LQSSSWNHGDQ- 165
            +      + +   I  P +IK   GG   GI V + ++ +   +    Q ++ N G+  
Sbjct: 137 IVKDLDDAVSTAASIGYPVIIKATAGGGGKGIRVARNEEELINGVTITQQEAAQNFGNPG 196

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E++++    +   V+ D       +        S + +   L      PA +  DI 
Sbjct: 197 VYLEKFIEDFRHVEIQVLADQHGHTIHLGERD---CSIQRRMQKLLEETPSPA-LNADIR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +++   A  A +A+   G    +F++D    K +++E+N 
Sbjct: 253 EQMGEAAVKAAEAVEYTGAGTVEFIYDYNEEKFYFMEMNT 292


>gi|110643492|ref|YP_671222.1| acetyl-CoA carboxylase biotin carboxylase subunit [Escherichia coli
           536]
 gi|117625538|ref|YP_858861.1| acetyl-CoA carboxylase biotin carboxylase subunit [Escherichia coli
           APEC O1]
 gi|162138360|ref|YP_542664.2| acetyl-CoA carboxylase biotin carboxylase subunit [Escherichia coli
           UTI89]
 gi|191173827|ref|ZP_03035348.1| acetyl-CoA carboxylase, biotin carboxylase [Escherichia coli F11]
 gi|218560318|ref|YP_002393231.1| acetyl-CoA carboxylase biotin carboxylase subunit [Escherichia coli
           S88]
 gi|218691539|ref|YP_002399751.1| acetyl-CoA carboxylase biotin carboxylase subunit [Escherichia coli
           ED1a]
 gi|300979728|ref|ZP_07174678.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli MS 200-1]
 gi|306816409|ref|ZP_07450541.1| acetyl-CoA carboxylase biotin carboxylase subunit [Escherichia coli
           NC101]
 gi|331649048|ref|ZP_08350136.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli M605]
 gi|331659535|ref|ZP_08360477.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli TA206]
 gi|110345084|gb|ABG71321.1| biotin carboxylase [Escherichia coli 536]
 gi|115514662|gb|ABJ02737.1| acetyl-CoA carboxylase [Escherichia coli APEC O1]
 gi|190905877|gb|EDV65495.1| acetyl-CoA carboxylase, biotin carboxylase [Escherichia coli F11]
 gi|218367087|emb|CAR04858.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli S88]
 gi|218429103|emb|CAR10047.2| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli ED1a]
 gi|281180290|dbj|BAI56620.1| acetyl-CoA carboxylase biotin carboxylase subunit [Escherichia coli
           SE15]
 gi|294490059|gb|ADE88815.1| acetyl-CoA carboxylase, biotin carboxylase [Escherichia coli
           IHE3034]
 gi|300307946|gb|EFJ62466.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli MS 200-1]
 gi|305849974|gb|EFM50433.1| acetyl-CoA carboxylase biotin carboxylase subunit [Escherichia coli
           NC101]
 gi|307625151|gb|ADN69455.1| acetyl-CoA carboxylase biotin carboxylase subunit [Escherichia coli
           UM146]
 gi|315289046|gb|EFU48444.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli MS 110-3]
 gi|315300910|gb|EFU60130.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli MS 16-3]
 gi|323951233|gb|EGB47108.1| acetyl-CoA carboxylase [Escherichia coli H252]
 gi|323957604|gb|EGB53318.1| acetyl-CoA carboxylase [Escherichia coli H263]
 gi|324015855|gb|EGB85074.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli MS 60-1]
 gi|330909297|gb|EGH37811.1| biotin carboxylase of acetyl-CoA carboxylase [Escherichia coli
           AA86]
 gi|331042795|gb|EGI14937.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli M605]
 gi|331054117|gb|EGI26146.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli TA206]
          Length = 449

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 80/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         L  DK+ +   +   GVP  P    
Sbjct: 77  AIHPGYGFLSENANFAEQVERSGFIFIGPKAETIRLMGDKVSAIAAMKKAGVPCVPGSDG 136

Query: 112 -LVNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
            L +    +      I  P +IK   GG   G+ V++ D  +   +     ++ +    D
Sbjct: 137 PLGDDMDKNRAIAKRIGYPVIIKASGGGGGRGMRVVRSDAELAQSISMTRAEAKAAFSND 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+Y++    +   V+ D   +   +A           K          PA  I  +
Sbjct: 197 MVYMEKYLENPRHVEIQVLADGQGNAIYLAERDCSMQRRHQK-----VVEEAPAPGITPE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + + +      A   IG RG    +FLF   + + +++E+N 
Sbjct: 252 LRRYIGERCAKACVDIGYRGAGTFEFLF--ENGEFYFIEMNT 291


>gi|288870534|ref|ZP_06114452.2| ATP-grasp domain protein [Clostridium hathewayi DSM 13479]
 gi|288866809|gb|EFC99107.1| ATP-grasp domain protein [Clostridium hathewayi DSM 13479]
          Length = 434

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 48/239 (20%), Positives = 88/239 (36%), Gaps = 29/239 (12%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILEL---LEIPYTHSGILASALSMDKMRS 96
           + +   + H++ D    V       D  ++ + E+     +P   S  + +A    K   
Sbjct: 78  QQLIESVRHVRFDGVITVC------DYYIETVCEVAKAYNVPCPFSANVKTAR--QKHLM 129

Query: 97  KQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154
           +Q V   G+     +L   +     +   I  P V+KP+   SS  + +I+    +    
Sbjct: 130 RQAVDRAGLSNPKYMLAYNWEEVEKAAQEIGYPLVLKPVDLASSAFVKLIQTSNDLQQAY 189

Query: 155 LQSSSW-------NHGDQLLIEQYVDGIELTC-GVMGDASLDVTEIAVPKSDFYSYELKY 206
               ++             LIE+Y+ G E++   V  +  + V  I    +D       Y
Sbjct: 190 RDLENFPLNFRDQERERAFLIEEYICGEEVSVETVSNNGEITVVGI----TDKSVTGSPY 245

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
              N  H+ PAK+  D+ +E+         A G   GI+ ++        KV   EIN 
Sbjct: 246 FIENG-HMFPAKLDEDVKEEIGDYVRNVLLATGYDHGIAHTEIKLTKDGPKVV--EINP 301


>gi|254487915|ref|ZP_05101120.1| acetyl-CoA carboxylase, biotin carboxylase [Roseobacter sp. GAI101]
 gi|214044784|gb|EEB85422.1| acetyl-CoA carboxylase, biotin carboxylase [Roseobacter sp. GAI101]
          Length = 450

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 75/221 (33%), Gaps = 20/221 (9%)

Query: 57  VLHGNFG---ED-GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--- 109
            +H  +G   E+ G VQ ILE   + +         +  DK+ +K  +   GVP  P   
Sbjct: 77  AIHPGYGFLSENAGFVQ-ILEDHGLTFIGPTAAHIRIMGDKITAKDTMKDLGVPCVPGSD 135

Query: 110 -SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GD 164
             +            I  P +IK   GG   G+ V +    +    + + +        D
Sbjct: 136 GGVPTLEDAKRIGEEIGYPVIIKATAGGGGKGMKVAQTAADMERAFMTARAEGKSNFGND 195

Query: 165 QLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           ++ IE+Y+     +   V GD       +            K             I  + 
Sbjct: 196 EVYIEKYLTTPRHIEIQVFGDGKGRAVHLGERDCSLQRRHQKVF----EEAPGPSITAEE 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              + ++   A   I   G    +FL+   + + +++E+N 
Sbjct: 252 RARIGKVCADAMANINYIGAGTIEFLY--ENGEFYFIEMNT 290


>gi|170766037|ref|ZP_02900848.1| acetyl-CoA carboxylase, biotin carboxylase [Escherichia albertii
           TW07627]
 gi|170125183|gb|EDS94114.1| acetyl-CoA carboxylase, biotin carboxylase [Escherichia albertii
           TW07627]
          Length = 449

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 77/222 (34%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H  +G   E+      +E     +         L  DK+ +   +   GVP  P    
Sbjct: 77  AIHPGYGFLSENANFAEQVERSGFIFIGPKAETIRLMGDKVSAIAAMKKAGVPCVPGSDG 136

Query: 113 ----VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
                          I  P +IK   GG   G+ V++ D  +   +     ++ +    D
Sbjct: 137 PLGDDMEKNRAIAKRIGYPVIIKASGGGGGRGMRVVRSDAELAQSISMTRAEAKAAFSND 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+Y++    +   V+ D   +   +A           K          PA  I  +
Sbjct: 197 MVYMEKYLENPRHVEIQVLADGQGNAIYLAERDCSMQRRHQK-----VVEEAPAPGITPE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + + +      A   IG RG    +FLF   + + +++E+N 
Sbjct: 252 LRRYIGERCAKACIDIGYRGAGTFEFLF--ENGEFYFIEMNT 291


>gi|91788540|ref|YP_549492.1| carbamoyl-phosphate synthase large subunit [Polaromonas sp. JS666]
 gi|91697765|gb|ABE44594.1| carbamoyl-phosphate synthase large subunit [Polaromonas sp. JS666]
          Length = 1076

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 27/199 (13%), Positives = 76/199 (38%), Gaps = 9/199 (4%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF--TMDSQHLISPPYV 129
           LE   +P   +       + D+ R ++++    +   P+         ++    +  P V
Sbjct: 651 LEANGVPIIGTSPDMIDAAEDRERFQKLLHELKLRQPPNATARTEPEALEKAAALGYPLV 710

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTC-GVMGDASL 187
           ++P        + ++ + + +   + ++   +H   +L+++++ D IE     +  D  +
Sbjct: 711 VRPSYVLGGRAMEIVHEQRDLERYMREAVKVSHDSPVLLDRFLNDAIECDVDCIRDDKGV 770

Query: 188 DVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
                 +   +       +S  ++  + P  +  +   E++R      QA+   G+    
Sbjct: 771 TFIGGVMEHIEQAGV---HSGDSACSLPPYSLRAETVTEIKRQTAAMAQALNVVGLMNVQ 827

Query: 248 FLFDPLSRK--VFWLEINV 264
           F    +  K  ++ LE+N 
Sbjct: 828 FAIQNIDGKDVIYVLEVNP 846



 Score = 64.0 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 50/278 (17%), Positives = 105/278 (37%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  I              DV        ++V  ++A  +PD    
Sbjct: 29  SGVQACKALREEGYKVILINSNPATIMTDPATADVTYIEPITWQTVEKIIAKERPDAILP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      +LE  ++    +   A   + D+++ K+ ++  G+    S +
Sbjct: 89  TMGGQTALNCALDLWHHGVLEKYKVELIGAKPEAIDKAEDRLKFKEAMTKIGLGSARSGI 148

Query: 113 VNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +        Q  +  P VI+P       G  +    +   +   +    +  ++LLIE+
Sbjct: 149 AHSMDEAWAVQKTVGFPTVIRPSFTLGGTGGGIAYNPEEFEVICKRGLEASPTNELLIEE 208

Query: 171 YVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + + +   ++   D           +S  V PA+ +    Y+ +
Sbjct: 209 SLLGWKEYEMEVVRDTADNCIIVCSIENLDPMGVHT----GDSITVAPAQTLTDKEYQIL 264

Query: 228 QRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P+  ++  +E+N 
Sbjct: 265 RNASLAVLREIGVDTGGSNVQFSINPVDGRMVVIEMNP 302


>gi|51701707|sp|O93918|PYC_ASPTE RecName: Full=Pyruvate carboxylase; AltName: Full=Pyruvic
           carboxylase; Short=PCB
 gi|3806120|gb|AAC69197.1| pyruvate carboxylase [Aspergillus terreus]
          Length = 1193

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 41/221 (18%), Positives = 83/221 (37%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
           ++H  +G   E+      +E   + +            DK+ ++Q+   C VPV P    
Sbjct: 120 LIHPGYGFLSENADFARKVEKAGMVFVGPTPDTIDSLGDKVSARQLAIRCNVPVVPGTEG 179

Query: 112 LVNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGDQ 165
            V R+            P +IK   GG   G+ V++    +         ++ S      
Sbjct: 180 PVERYEEVKAFTDTYGFPIIIKAAFGGGGRGMRVVRNQADLRDSFERATSEARSAFGNGT 239

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDI 223
           + +E+++D    +   ++GD   +V              ++        V PA  +P D+
Sbjct: 240 VFVERFLDKPKHIEVQLLGDNHGNVV-----HLFERDCSVQRRHQKVVEVAPAKDLPTDV 294

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              +   A    +++  R    ++FL D  +R  +++EIN 
Sbjct: 295 RDRILSDAVKLAKSVNYRNAGTAEFLVDQQNRH-YFIEINP 334


>gi|90424278|ref|YP_532648.1| carbamoyl-phosphate synthase L chain, ATP-binding [Rhodopseudomonas
           palustris BisB18]
 gi|90106292|gb|ABD88329.1| Carbamoyl-phosphate synthase L chain, ATP-binding [Rhodopseudomonas
           palustris BisB18]
          Length = 667

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 78/220 (35%), Gaps = 18/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E            I +             K  SKQ++   GVP+ P    
Sbjct: 85  AIHPGYGFLSESAEFAQACADAGIVFVGPTAAMITAMGSKSGSKQLMEQAGVPLVPGFHG 144

Query: 114 NRFTM----DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
                    D+ + I  P ++K   GG   G+ V+     +   ++    ++ +    D+
Sbjct: 145 EAQDEATLADAANSIGYPVLVKASAGGGGRGMRVVHTANELSAAIVSAKREAKAAFGDDR 204

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           +LIE+YV     +   V+GD+  ++  +   +        K             +     
Sbjct: 205 MLIERYVTNPRHIEVQVVGDSHGNLVSLFERECTLQRRHQK----VIEEAPSPTLSPAQR 260

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + V   A  A  A+   G    +F+ D   R VF++E+N 
Sbjct: 261 ETVCAAARKAAAAVNYVGAGTIEFVSD--GRDVFFIEMNT 298


>gi|264676745|ref|YP_003276651.1| cyanophycin synthetase [Comamonas testosteroni CNB-2]
 gi|262207257|gb|ACY31355.1| cyanophycin synthetase [Comamonas testosteroni CNB-2]
          Length = 856

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 25/112 (22%), Positives = 51/112 (45%), Gaps = 5/112 (4%)

Query: 88  ALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIV-I 144
           +++ DK  +K+++ + GVPV     V            +  P V+KP  G    G++V I
Sbjct: 200 SIAQDKDLTKRLLHAAGVPVPMGRPVTDVEDAWAVAQEVGLPVVVKPQDGNQGKGVVVNI 259

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK 196
              + +      +S +  GD++L+E+++ G +    V+G   +       P+
Sbjct: 260 TTREGLEAAYKTASEF--GDEILVERFLPGHDFRMLVVGGQLVAAARREPPQ 309


>gi|253579875|ref|ZP_04857143.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251848874|gb|EES76836.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 1071

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 34/225 (15%), Positives = 80/225 (35%), Gaps = 13/225 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTMDSQHLISPPYV 129
           L  + +    +       + D+    +++  C +P      V        + + +  P +
Sbjct: 650 LTKMGVKILGTSAENVDAAEDRELFDEILEKCEIPRPKGQTVFTAEEAKKAANELGYPVL 709

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           ++P       G+ +   D+ +   +   +       +L+++Y+ G E+    + D     
Sbjct: 710 VRPSYVLGGQGMRIAVSDEDVEEYIGVINQIAQEHPILVDKYLMGKEIEVDAVCDGE--- 766

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
            +I +P    +       S +S  V PAK I     + +        +A+   G+    F
Sbjct: 767 -DILIPGIMEHIERAGIHSGDSISVYPAKTISEKAKETIAEYTRRLARALHVIGMINIQF 825

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +   L   V+ +E+N +   T     P ++   G     L   ++
Sbjct: 826 IV--LGDDVYVIEVNPRSSRT----VPYISKVTGIPIVPLATKVI 864



 Score = 59.4 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 44/286 (15%), Positives = 99/286 (34%), Gaps = 33/286 (11%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQID-------VDRSVG--------------LV 45
           G ++E + +   G     +L++ G +V  ++        D+ +                +
Sbjct: 21  GQAAEFDYA---GTQACRSLKEEGIEVVLLNSNPATIMTDKDIADRVYIEPLTVEVVEQL 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   KPD     L G  G +  ++      L+   I    +       + D+   K  + 
Sbjct: 78  ILKEKPDSVLPTLGGQAGLNLAMELDEKGFLKEHNIRLIGTTAQTIKKAEDRQEFKDTME 137

Query: 102 SCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G P+  S +V      +   ++I  P V++P       G  +   +  +   L     
Sbjct: 138 KIGEPIAASKVVTTVEDGLAFTNIIGYPVVLRPAYTLGGSGGGIAHNEYELREILENGLR 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   ++L+E+ + G  E+   VM D++ +   I V   +       ++  +        
Sbjct: 198 LSRVGEVLVERCIAGWKEIEYEVMRDSAGN--CITVCNMENIDPVGVHTGDSIVVAPSQT 255

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +    Y+ ++  A      +G  G     +   P S +   +E+N 
Sbjct: 256 LGDKEYQMLRTSALNIITELGITGGCNVQYALKPDSFEYCVIEVNP 301


>gi|213691634|ref|YP_002322220.1| carbamoyl-phosphate synthase, large subunit [Bifidobacterium longum
           subsp. infantis ATCC 15697]
 gi|254813560|sp|B7GPW2|CARB_BIFLI RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|213523095|gb|ACJ51842.1| carbamoyl-phosphate synthase, large subunit [Bifidobacterium longum
           subsp. infantis ATCC 15697]
 gi|320457721|dbj|BAJ68342.1| carbamoyl phosphate synthase large subunit [Bifidobacterium longum
           subsp. infantis ATCC 15697]
          Length = 1127

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 44/288 (15%), Positives = 103/288 (35%), Gaps = 36/288 (12%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQIDVDRS---------------------VGLV 45
           G ++E + S   G      L + G +V  ++ + +                     +  +
Sbjct: 21  GQAAEFDYS---GTQACRVLREEGIRVILVNSNPATIMTDPEMADATYIEPIATPILEQI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +A  +PD     L G    +  +      +L+   +    + + A     D+   K+VV 
Sbjct: 78  IAKERPDALLPTLGGQTALNAAMALGEAGVLKKYNVELIGASLEAIDRGEDRELFKKVVD 137

Query: 102 SCGVPVCPSILVNRFTMDS--QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G     S + +              P V++P      LG  +   ++ +         
Sbjct: 138 EAGAESARSDIAHSIEEVDKIAEKFGYPLVVRPSFTMGGLGSGIAHNEEELHRIAGAGIH 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
           ++  D++LIE+ ++G  E    +M D + +V  +   ++      +   + +S  V P  
Sbjct: 198 YSPTDEVLIEEGIEGWKEFELELMRDRNDNVVVVCPIENVD---PVGVHTGDSITVAPCF 254

Query: 219 -IPLDIYKEVQRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
            +    Y++++ +     + +G   G     F   P + ++  +E+N 
Sbjct: 255 TLTDREYQKLRDIGIAIIRGVGVDTGGCNIQFAVHPKTGRIIVIEMNP 302



 Score = 52.8 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 34/233 (14%), Positives = 77/233 (33%), Gaps = 29/233 (12%)

Query: 67  LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTMDSQHLI 124
            + A L+   +P   +   +  L+ ++    +V+    +        L     MD+ H I
Sbjct: 651 SLAARLKAAGVPILGTTPESIDLAENRELFGEVLKKAEMNAPRYGTALSLEEAMDAAHRI 710

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
             P +++P       G+ ++  D+ +   + ++ +    D +     V G   +  ++  
Sbjct: 711 GYPVLVRPSYVLGGRGMEIVYDDKQLTKYVDRALAEAKADTV-----VSGRLPSPLLIDK 765

Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK--------------IPLDIYKEVQRL 230
              D  EI V     +  E  Y      HV  A               +  D  + ++  
Sbjct: 766 FLQDAIEIDV--DALFDGEELYIGGIMEHVEEAGVHSGDAACTLPPSTLSDDQIRRLREG 823

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283
            +   +    +G+    + F      ++ +E N +   T     P  +   G 
Sbjct: 824 TYAIAKGCHVQGLINVQYAFMA--NTLYVIEANPRASRT----VPFASKATGV 870


>gi|118618104|ref|YP_906436.1| bifunctional protein acetyl-/propionyl-coenzyme a carboxylase
           (alpha chain) AccA3 [Mycobacterium ulcerans Agy99]
 gi|118570214|gb|ABL04965.1| bifunctional protein acetyl-/propionyl-coenzyme a carboxylase
           (alpha chain) AccA3 [Mycobacterium ulcerans Agy99]
          Length = 597

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 79/222 (35%), Gaps = 19/222 (8%)

Query: 56  NVLHGNFG---EDGLV-QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           N +H  +G   E+    QA+++   + +      +     DK+ ++ + +    P+ P  
Sbjct: 83  NAIHPGYGFLSENADFAQAVID-AGLIWIGPSPQSIRDLGDKVTARHIAARAKAPLVPGT 141

Query: 112 LVNRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL----DLLQSSSWNHG 163
                  +           P  IK   GG   G+ V +  + IP      + ++++    
Sbjct: 142 PDPVKNAEEVVAFAQEYGLPIAIKAAFGGGGRGMKVARTVEEIPELYESAVREATAAFGR 201

Query: 164 DQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD 222
            +  +E+Y+D    +   V+ D   +V    V  +   S + +Y  L         +   
Sbjct: 202 GECFVERYLDRPRHVEAQVIADQHGNVV---VAGTRDCSLQRRYQKL-VEEAPAPFLSDA 257

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             KE+   A    +     G    ++L       + +LE+N 
Sbjct: 258 QRKEIHESAKRICKEAHYYGAGTVEYLV-GQDGLISFLEVNT 298


>gi|315126490|ref|YP_004068493.1| hypothetical protein PSM_A1409 [Pseudoalteromonas sp. SM9913]
 gi|315015004|gb|ADT68342.1| hypothetical protein PSM_A1409 [Pseudoalteromonas sp. SM9913]
          Length = 464

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 31/185 (16%), Positives = 71/185 (38%), Gaps = 15/185 (8%)

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSLGIIVI 144
              +K+      +   VP   +++V   + D+    +   + P V+K  +G  S G+  +
Sbjct: 255 RCCNKVYLHDAFNYQKVPSLKTVVVADQSKDTIEQLEASFTYPLVLKMPEGSFSKGVYKV 314

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKS--DFYS 201
                +   L +  +      +L ++Y+    +   GV+   ++      + ++    Y+
Sbjct: 315 ANRDELEAKLSELFAL--SALVLAQEYMYTEYDWRVGVLNGRAIYACRYLMARNHWQIYN 372

Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
           ++ K         LP     ++ K V   A  A + +G +G+   D        + + LE
Sbjct: 373 HDAKRFFSGGFETLP---TFELPKAVLDAALKACKTVG-KGLYGVD--VKEHQGRAYVLE 426

Query: 262 INVQP 266
           +N  P
Sbjct: 427 VNDNP 431


>gi|261253796|ref|ZP_05946369.1| carbamoyl-phosphate synthase large chain [Vibrio orientalis CIP
           102891]
 gi|260937187|gb|EEX93176.1| carbamoyl-phosphate synthase large chain [Vibrio orientalis CIP
           102891]
          Length = 1076

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 46/278 (16%), Positives = 96/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D D              V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPDMADATYIEPIQWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV--PVCPS 110
            + G    +  +      +LE   +    +   A   + D+ R  + + S G+  P   +
Sbjct: 89  TMGGQTALNCALDLEKHGVLEEFGVEMIGATADAIDKAEDRSRFDKAMKSIGLECPRADT 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                       ++  P +I+P       G  +    +       +    +  ++LLI++
Sbjct: 149 AKTMEEAYGVLDMVGFPCIIRPSFTMGGTGGGIAYNKEEFEEICRRGLDLSPTNELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + + +   A+   D           +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKADNCIIVCAIENFDPMGIHT----GDSITVAPAQTLTDKEYQLM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P   ++  +E+N 
Sbjct: 265 RNASLAVLREIGVETGGSNVQFGINPKDGRMVIIEMNP 302



 Score = 61.7 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 34/196 (17%), Positives = 76/196 (38%), Gaps = 8/196 (4%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQHLISPPYV 129
           LE   +P   +   A   + D+ R +  V   G+    +  V      ++    I  P V
Sbjct: 653 LEAAGVPIIGTSPDAIDRAEDRERFQVAVDRLGLLQPENATVTTMEQAIEKSREIGFPLV 712

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           ++P        + ++  +Q +     ++ S ++   +L++ ++D       V  DA  D 
Sbjct: 713 VRPSYVLGGRAMEIVYDEQDLRRYFNEAVSVSNESPVLLDSFLD---DAVEVDIDAICDG 769

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
             + +     +  +    S +S   LPA  +  +I   ++         +G RG+  + F
Sbjct: 770 ERVVIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMREQVEKLAFELGVRGLMNTQF 829

Query: 249 LFDPLSRKVFWLEINV 264
                + +V+ +E+N 
Sbjct: 830 AV--KNNQVYLIEVNP 843


>gi|239815122|ref|YP_002944032.1| acetyl-CoA carboxylase, biotin carboxylase [Variovorax paradoxus
           S110]
 gi|239801699|gb|ACS18766.1| acetyl-CoA carboxylase, biotin carboxylase [Variovorax paradoxus
           S110]
          Length = 682

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 77/220 (35%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+      +E   I +      + A   DK+ SK++ +   V   P    
Sbjct: 77  AVHPGYGFLSENEAFARKVEEEGIAFIGPKHYSIAAMGDKIASKKLANEAKVNTIPGWND 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
            I      ++    I  P +IK   GG   G+ V   D+           ++ S    D+
Sbjct: 137 AIETAERAVEIAKDIGYPVMIKASAGGGGKGLRVAYNDKEAFEGFTSCRNEALSSFGDDR 196

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE++V+    +   V+GD+  +V  +   +        K             I     
Sbjct: 197 VFIEKFVEEPRHIEIQVLGDSHGNVIYLNERECSIQRRHQK----VIEEAPSPFISDATR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +   A    +A+  +     +F      +  ++LE+N 
Sbjct: 253 RAMGEQAVQLAKAVKYQSAGTVEF-VVGKDQSFYFLEMNT 291


>gi|329769961|ref|ZP_08261359.1| carbamoyl-phosphate synthase large subunit [Gemella sanguinis M325]
 gi|328837565|gb|EGF87191.1| carbamoyl-phosphate synthase large subunit [Gemella sanguinis M325]
          Length = 1058

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 26/219 (11%), Positives = 75/219 (34%), Gaps = 14/219 (6%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL--ISPPYV 129
           LE   +    + +     + D+ + ++++    +P              Q+   I  P +
Sbjct: 646 LEKYGVKILGTALEEIDNAEDRDKFEELLRKLDIPQPLGKTAFDVETAVQNAKEIGYPVL 705

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           ++P        + ++ ++  +   +  +        +L ++Y+ G E+    + D    +
Sbjct: 706 VRPSYVLGGRAMEIVYEESELRRYMKTAVKLTPEHPVLTDRYLIGREIEVDAISDGETVI 765

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               +   +           +S  V P + +     +++        + +   G+    +
Sbjct: 766 IPGIMEHIERAGVHS----GDSIAVYPPQTLTEGEREKLIEYTIKLAKGLNIVGLLNIQY 821

Query: 249 LFDPLSRKVFWLEIN-----VQPGMTPVSIFPEMAAYAG 282
           +      +VF LE+N       P ++ ++  P     AG
Sbjct: 822 VISK--GEVFVLEVNPRSSRTVPFLSKITGVPMAKLAAG 858



 Score = 64.8 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 47/274 (17%), Positives = 105/274 (38%), Gaps = 33/274 (12%)

Query: 20  KACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNVL 58
           +AC S L + G++V  ++        D+ +                V+   +PD     L
Sbjct: 32  QACLS-LREEGYEVILVNSNPATIMTDKEIADKVYMEPLTLEFVSKVIRKERPDALLPTL 90

Query: 59  HGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
            G  G +  V+     +L+   +    + + +   + D+   + +++    PV  S ++ 
Sbjct: 91  GGQVGLNLAVELHKSGVLDRYGVELLGTKLSSIEQAEDRELFRNLMNELNEPVPESDIIT 150

Query: 115 --RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                 +    I  P +++P       G  +   D+ +   +     ++   Q L+E+ +
Sbjct: 151 TVEEAYEFVREIGYPVIVRPAFTMGGTGGGICYNDKDLEEIVSSGLHYSPVTQCLLEKSI 210

Query: 173 DG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRL 230
            G  E+   VM D++   T I V   +     +   + +S  V P++ +    Y  ++ +
Sbjct: 211 AGFKEIEYEVMRDSND--TAIVVCNMENID-PVGIHTGDSVVVAPSQTLTDREYHMLRDV 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +    +A+   G        DP S K + +E+N 
Sbjct: 268 SLKIIRALKIEGGCNVQLALDPESFKYYIIEVNP 301


>gi|300697538|ref|YP_003748199.1| Biotin carboxylase (acetyl-CoA carboxylase subunit A) (ACC)
           [Ralstonia solanacearum CFBP2957]
 gi|299074262|emb|CBJ53807.1| Biotin carboxylase (Acetyl-CoA carboxylase subunit A) (ACC)
           [Ralstonia solanacearum CFBP2957]
          Length = 455

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 38/223 (17%), Positives = 82/223 (36%), Gaps = 23/223 (10%)

Query: 57  VLHGNFG---ED-GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            +H  +G   E+ G V+ + +   + +            DK+ +K+ +   GVP  P   
Sbjct: 77  AIHPGYGFLSENAGFVERVTD-AGLTFIGPSADCIRTMGDKVSAKRAMREAGVPCVPGPD 135

Query: 113 VNRFTMDSQ-----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHG 163
            +     +      H I  P ++K   GG   G+ V+++  ++   L     ++      
Sbjct: 136 TSLPDDPAAVLAIAHEIGFPVIVKAAGGGGGRGMRVVQEAAALADALTLTREEARRAFGN 195

Query: 164 DQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPL 221
            ++ IE+++     +   V+ D       +           L+          PA  I  
Sbjct: 196 PEVYIEKFLTHPRHVEIQVLADRYGHAVWL-----GSRDCSLQRRHQKVLEEAPAPGIDP 250

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +  EV      A + +G  G+   +FL+   +   +++E+N 
Sbjct: 251 ALIAEVGERCAAACRQVGYCGVGTFEFLY--ENGAFYFIEMNT 291


>gi|296313298|ref|ZP_06863239.1| carbamoyl-phosphate synthase, large subunit [Neisseria
           polysaccharea ATCC 43768]
 gi|296840205|gb|EFH24143.1| carbamoyl-phosphate synthase, large subunit [Neisseria
           polysaccharea ATCC 43768]
          Length = 1071

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/192 (14%), Positives = 73/192 (38%), Gaps = 8/192 (4%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYVIKPL 133
            +    +   +   + D+ R ++V++  G+   P+ + +           I  P V++P 
Sbjct: 652 GVNIIGTSADSIDAAEDRERFQKVLNDLGLRQPPNRIAHNEEEALVKAEEIGYPLVVRPS 711

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEI 192
                  + ++   + +   + ++   +    +L++ ++ + IE+    + D+   V   
Sbjct: 712 YVLGGRAMQIVHSAEELQKYMREAVQVSEDSPVLLDFFLNNAIEVDVDCVSDSKDVVIGG 771

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            +   +       +S  +   + P  +  +I  E++R       A+G  G+    F    
Sbjct: 772 IMQHVEQAGI---HSGDSGCSLPPYSLSEEIQDEIRRQTKAMAYALGVVGLMNVQFAV-- 826

Query: 253 LSRKVFWLEINV 264
               VF LE+N 
Sbjct: 827 QDGVVFVLEVNP 838



 Score = 63.6 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 50/278 (17%), Positives = 101/278 (36%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +              DV        ++V  ++A  +PD    
Sbjct: 29  SGAQACKALHEEGYKVILVNSNPATIMTDPEMADVTYIEPIMWQTVEKIIAKERPDAILP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      +L    +    +   A   + D+ R K+ +   G+    S +
Sbjct: 89  TMGGQTALNCALDLARNGVLAKYNVELIGATEDAIDKAEDRGRFKEAMEKIGLSCPKSFV 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     + +Q  +  P +I+P       G  +            +    +   +LLIEQ
Sbjct: 149 CHTMNEALAAQEQVGFPTLIRPSFTMGGSGGGIAYNKDEFLAICERGFDASPTHELLIEQ 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            V G  E    V+ D + +   I   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SVLGWKEYEMEVVRDKNDNCIIICSIEN----FDPMGVHTGDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RNASLAVLREIGVDTGGSNVQFAVNPENGEMIVIEMNP 302


>gi|257466976|ref|ZP_05631287.1| carbamoyl phosphate synthase large subunit [Fusobacterium
           gonidiaformans ATCC 25563]
 gi|315918117|ref|ZP_07914357.1| carbamoyl-phosphate synthase subunit large [Fusobacterium
           gonidiaformans ATCC 25563]
 gi|313691992|gb|EFS28827.1| carbamoyl-phosphate synthase subunit large [Fusobacterium
           gonidiaformans ATCC 25563]
          Length = 1068

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 33/216 (15%), Positives = 82/216 (37%), Gaps = 22/216 (10%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH------LIS 125
           LE   I    +       + D+ + ++++ S  +         R + D +H       + 
Sbjct: 648 LEKRNIKILGTSAEKIDEAEDREKFEEMMESLDIKRPRG----RASWDVEHGIAIANEVG 703

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            P +++P       G+ +   + ++   L  S S +    +LI++Y++GIEL    + D 
Sbjct: 704 YPVLVRPSYVLGGQGMEICHDEVNLVKYLEASFSRDASSPVLIDKYLNGIELEVDAICDG 763

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGIS 244
              +    +   +           +S  + P   +     +E+  +     +A+  +G+ 
Sbjct: 764 EDVLIPGVMEHLERAGVHS----GDSITIYPQQNLYKGTEEEILDITRKIARALEVKGMM 819

Query: 245 RSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFP 275
              F+      +++ +E+N       P ++ +S  P
Sbjct: 820 NIQFI--AYQNELYVIEVNPRSSRTVPYISKISGLP 853



 Score = 60.1 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 56/287 (19%), Positives = 107/287 (37%), Gaps = 35/287 (12%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQID-------VDRSVGL--------------V 45
           G ++E + S   G      L+  G +V  I+        D+++                V
Sbjct: 20  GQAAEFDYS---GTQACETLKKEGIEVVLINSNPATIMTDKAIADRIYIEPITFEFVVKV 76

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   +PD     + G    +  V+     ILE   I    + I +     D+   ++ + 
Sbjct: 77  IEKERPDSIIAGMGGQTALNMAVELSEKGILEKYGIKVIGTSIESIKRGEDRELFREAME 136

Query: 102 SCGVPVCPSILVNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G P+  S +V          + I  P V++P       G       Q +   LL+  S
Sbjct: 137 KIGEPILTSHVVESLEEGYKIANEIGYPVVVRPAYTLGGTGGGFAHNPQELEEILLKGLS 196

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   Q+LIE+ + G  E+   V+ DA+ +   +   ++      +   + +S  V P++
Sbjct: 197 LSRVGQVLIERSILGWKEIEYEVIRDANGNAITVCNMEN---IDPVGIHTGDSIVVAPSQ 253

Query: 219 -IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +    Y+ ++R +    + IG  G     F   P S +   +EIN 
Sbjct: 254 TLTDREYQMLRRASLKIVEEIGIVGGCNVQFALHPKSFEYAIIEINP 300


>gi|224283412|ref|ZP_03646734.1| Carbamoylphosphate synthase large subunit [Bifidobacterium bifidum
           NCIMB 41171]
 gi|313140567|ref|ZP_07802760.1| CarB [Bifidobacterium bifidum NCIMB 41171]
 gi|313133077|gb|EFR50694.1| CarB [Bifidobacterium bifidum NCIMB 41171]
          Length = 1126

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 43/288 (14%), Positives = 105/288 (36%), Gaps = 36/288 (12%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQIDVDRS---------------------VGLV 45
           G ++E + S   G      L + G +V  ++ + +                     +  +
Sbjct: 21  GQAAEFDYS---GTQACRVLREEGIRVILVNSNPATIMTDPEMADATYIEPIATPILEQI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +A  +PD     L G    +  +      +L+   +    + + A     D+   K+VV 
Sbjct: 78  IAKERPDALLPTLGGQTALNAAMALGEAGVLKKYNVELIGASLDAIDRGEDRELFKKVVD 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G     S + +  +        +  P V++P      LG  +   ++ +         
Sbjct: 138 EAGAESARSEVAHSMKEVDAVAAELGYPLVVRPSFTMGGLGSGIAHDEEELHRIAGAGLH 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
           ++  D++L+E+ ++G  E    +M D + +V  +   ++      +   + +S  V P  
Sbjct: 198 YSPTDEVLLEEGIEGWKEFELELMRDRNDNVVVVCPIENVD---PVGVHTGDSITVAPCF 254

Query: 219 -IPLDIYKEVQRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
            +    Y++++ +     + +G   G     F   P + ++  +E+N 
Sbjct: 255 TLTDREYQKLRDIGIAIIRGVGVDTGGCNIQFAVHPDTGRIIVIEMNP 302



 Score = 50.5 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 32/233 (13%), Positives = 75/233 (32%), Gaps = 29/233 (12%)

Query: 67  LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTMDSQHLI 124
            + A L+   +P   +   +  L+ ++    +V+    +        L      ++ H I
Sbjct: 651 SLAARLKAAGVPILGTTPESIDLAENRELFGEVLRREHMNAPRYGTALSLEEAREAAHNI 710

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
             P +++P       G+ ++  D  +   + ++      D +     V G   +  ++  
Sbjct: 711 GYPVLVRPSYVLGGRGMEIVYDDAQLTKYVNRALDEAKADTV-----VSGRLPSPLLIDK 765

Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK--------------IPLDIYKEVQRL 230
              D  EI V     +  E  Y      H+  A               +  D  + ++  
Sbjct: 766 FLQDAIEIDV--DALFDGEELYIGGIMEHIEEAGVHSGDAACTLPPSTLSDDQIRRLREG 823

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283
            +   +  G +G+    + F      ++ +E N +   T     P  +   G 
Sbjct: 824 TYAISKGCGVKGLINVQYAFMA--NTLYVIEANPRASRT----VPFASKATGV 870


>gi|212709135|ref|ZP_03317263.1| hypothetical protein PROVALCAL_00168 [Providencia alcalifaciens DSM
           30120]
 gi|212688047|gb|EEB47575.1| hypothetical protein PROVALCAL_00168 [Providencia alcalifaciens DSM
           30120]
          Length = 1073

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 49/319 (15%), Positives = 108/319 (33%), Gaps = 52/319 (16%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D +              V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +    Q +L    +    +   A   + D+ R  + +   G+    S +
Sbjct: 89  TMGGQTALNCALELERQGVLAEFGVTMIGATADAIDKAEDRQRFDKAMKKIGLGTARSGI 148

Query: 113 VNRFTMDS--QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     +     +  P +I+P       G  +    +       +    +  ++LLI++
Sbjct: 149 AHTMEEANAVADDVGFPCIIRPSFTMGGSGGGIAYNREEFEEICTRGLDLSPTNELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D   +   +   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKKDNCIIVCSIEN----FDAMGIHTGDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV-----------QPGMTPVSIFP 275
           +  +    + IG   G S   F  +P   ++  +E+N              G        
Sbjct: 265 RDASMAVLREIGVETGGSNVQFAVNPKDGRLIVIEMNPRVSRSSALASKATGF----PIA 320

Query: 276 EMAA--YAGYSFRELLLWM 292
           ++AA    GY+  EL+  +
Sbjct: 321 KIAAKLAVGYTLDELMNDI 339



 Score = 58.2 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 76/197 (38%), Gaps = 10/197 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           LE   +P   +   A   + D+ R +Q V+   +    +  V      ++    I  P V
Sbjct: 654 LEAAGVPVIGTSPDAIDRAEDRERFQQAVNRLNLKQPQNATVATIEQAVEKAAGIGYPLV 713

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  +  +      + S ++   +L+++++ D IE+    + D  + 
Sbjct: 714 VRPSYVLGGRAMEIVYDEIDLRRYFQTAVSVSNDAPVLLDRFLDDAIEVDVDAICDGEMV 773

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           +    +   +    +    S +S   LPA  +  +I   ++         +  RG+    
Sbjct: 774 LIGGIMEHIE----QAGVHSGDSACSLPAYTLSQEIQDVMREQVRSLAFELRVRGLMNVQ 829

Query: 248 FLFDPLSRKVFWLEINV 264
           F     + +V+ +E+N 
Sbjct: 830 FAV--KNNEVYLIEVNP 844


>gi|220915400|ref|YP_002490704.1| Carbamoyl-phosphate synthase L chain ATP-binding [Anaeromyxobacter
           dehalogenans 2CP-1]
 gi|219953254|gb|ACL63638.1| Carbamoyl-phosphate synthase L chain ATP-binding [Anaeromyxobacter
           dehalogenans 2CP-1]
          Length = 510

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 78/220 (35%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+  +   L+   I        A      K  +++ +++ GVPV P    
Sbjct: 82  AVHPGYGFLSENAELARALDRAGIALVGPPAAAMDAMGVKTTARRNMAAAGVPVVPGSEE 141

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL----DLLQSSSWNHGDQ 165
                         I  P +IK   GG   G+    + +           ++++    D+
Sbjct: 142 PFAEEAEARAFAERIGFPVMIKAAAGGGGKGMKKCDRAEDFAALWQSARREATAAFGDDR 201

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           L +E++++    +   +  D   +   +   +      + K           A +   + 
Sbjct: 202 LYLEKFLEKPRHVEIQIFADQHGNCVWLGERECSVQRRQQK----VIEETPSAVLDDRLR 257

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +  +A  A +A+G  G    + L D   R  ++LE+N 
Sbjct: 258 EAMGEVAVRAARAVGYVGAGTVELLVDAH-RNFYFLEMNT 296


>gi|69245732|ref|ZP_00603598.1| Acetyl-CoA carboxylase, biotin carboxylase [Enterococcus faecium
           DO]
 gi|257880235|ref|ZP_05659888.1| acetyl-CoA carboxylase [Enterococcus faecium 1,230,933]
 gi|257883036|ref|ZP_05662689.1| acetyl-CoA carboxylase [Enterococcus faecium 1,231,502]
 gi|257885281|ref|ZP_05664934.1| acetyl-CoA carboxylase [Enterococcus faecium 1,231,501]
 gi|257891381|ref|ZP_05671034.1| acetyl-CoA carboxylase [Enterococcus faecium 1,231,410]
 gi|257893622|ref|ZP_05673275.1| acetyl-CoA carboxylase [Enterococcus faecium 1,231,408]
 gi|258614424|ref|ZP_05712194.1| acetyl-CoA carboxylase biotin carboxylase subunit [Enterococcus
           faecium DO]
 gi|260560467|ref|ZP_05832641.1| acetyl-CoA carboxylase [Enterococcus faecium C68]
 gi|293563285|ref|ZP_06677735.1| acetyl-CoA carboxylase, biotin carboxylase [Enterococcus faecium
           E1162]
 gi|294621387|ref|ZP_06700559.1| acetyl-CoA carboxylase, biotin carboxylase [Enterococcus faecium
           U0317]
 gi|314939223|ref|ZP_07846477.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Enterococcus
           faecium TX0133a04]
 gi|314942041|ref|ZP_07848899.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Enterococcus
           faecium TX0133C]
 gi|314948386|ref|ZP_07851775.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Enterococcus
           faecium TX0082]
 gi|314951240|ref|ZP_07854295.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Enterococcus
           faecium TX0133A]
 gi|314991663|ref|ZP_07857133.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Enterococcus
           faecium TX0133B]
 gi|314996789|ref|ZP_07861802.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Enterococcus
           faecium TX0133a01]
 gi|68195625|gb|EAN10065.1| Acetyl-CoA carboxylase, biotin carboxylase [Enterococcus faecium
           DO]
 gi|257814463|gb|EEV43221.1| acetyl-CoA carboxylase [Enterococcus faecium 1,230,933]
 gi|257818694|gb|EEV46022.1| acetyl-CoA carboxylase [Enterococcus faecium 1,231,502]
 gi|257821133|gb|EEV48267.1| acetyl-CoA carboxylase [Enterococcus faecium 1,231,501]
 gi|257827741|gb|EEV54367.1| acetyl-CoA carboxylase [Enterococcus faecium 1,231,410]
 gi|257830001|gb|EEV56608.1| acetyl-CoA carboxylase [Enterococcus faecium 1,231,408]
 gi|260073469|gb|EEW61797.1| acetyl-CoA carboxylase [Enterococcus faecium C68]
 gi|291599034|gb|EFF30079.1| acetyl-CoA carboxylase, biotin carboxylase [Enterococcus faecium
           U0317]
 gi|291604737|gb|EFF34221.1| acetyl-CoA carboxylase, biotin carboxylase [Enterococcus faecium
           E1162]
 gi|313589084|gb|EFR67929.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Enterococcus
           faecium TX0133a01]
 gi|313593754|gb|EFR72599.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Enterococcus
           faecium TX0133B]
 gi|313596592|gb|EFR75437.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Enterococcus
           faecium TX0133A]
 gi|313599167|gb|EFR78012.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Enterococcus
           faecium TX0133C]
 gi|313641474|gb|EFS06054.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Enterococcus
           faecium TX0133a04]
 gi|313645178|gb|EFS09758.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Enterococcus
           faecium TX0082]
          Length = 459

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 74/220 (33%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  FG   E+    ++ E   I +            +K+ ++Q++    VPV P    
Sbjct: 77  AIHPGFGFLSENSRFASMCEECNITFIGPKSATIDAMGNKINARQLMQEANVPVIPGSTG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGD 164
            +      ++    I  P ++K   GG   GI  ++  + +P          ++++ + D
Sbjct: 137 VLSTVEEALEIADRIGYPVMLKAAAGGGGKGIRKVQSKEELPQHFSSAQQEAAAAFGNDD 196

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             L +       +   ++GD    V  +            K             I     
Sbjct: 197 MYLEKIIYPARHIEVQILGDRFGHVIHLGERDCSLQRNNQKVL----EESPSVVISQTKR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +   A  A +A+        +FL D      +++E+N 
Sbjct: 253 EALGDAAVRAAKAVNYENAGTIEFLMDE-EGDFYFMEMNT 291


>gi|325204812|gb|ADZ00266.1| carbamoyl-phosphate synthase, large subunit [Neisseria meningitidis
           M01-240355]
          Length = 1071

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/192 (14%), Positives = 73/192 (38%), Gaps = 8/192 (4%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYVIKPL 133
            +    +   +   + D+ R ++V++  G+   P+ + +           I  P V++P 
Sbjct: 652 GVNIIGTSADSIDAAEDRERFQKVLNDLGLRQPPNRIAHNEEEALVKAEEIGYPLVVRPS 711

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEI 192
                  + ++   +++   + ++   +    +L++ ++ + IE+    + D    V   
Sbjct: 712 YVLGGRAMQIVHSAEALQKYMREAVQVSEDSPVLLDFFLNNAIEVDVDCVSDGKDVVIGG 771

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            +   +       +S  +   + P  +  +I  E++R       A+G  G+    F    
Sbjct: 772 IMQHVEQAGI---HSGDSGCSLPPYSLSEEIQDEIRRQTKAMAYALGVVGLMNVQFAV-- 826

Query: 253 LSRKVFWLEINV 264
               VF LE+N 
Sbjct: 827 QDGVVFVLEVNP 838



 Score = 65.1 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 50/278 (17%), Positives = 101/278 (36%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +              DV        ++V  ++A  +PD    
Sbjct: 29  SGTQACKALREEGYKVILVNSNPATIMTDPEMADVTYIEPIMWQTVEKIIAKERPDAILP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      +L    +    +   A   + D+ R K+ +   G+    S +
Sbjct: 89  TMGGQTALNCALDLARNGVLAKYNVELIGATEDAIDKAEDRGRFKEAMEKIGLSCPKSFV 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     + +Q  +  P +I+P       G  +            +    +   +LLIEQ
Sbjct: 149 CHTMNEALAAQEQVGFPTLIRPSFTMGGSGGGIAYNKDEFLAICERGFDASPTHELLIEQ 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            V G  E    V+ D + +   I   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SVLGWKEYEMEVVRDKNDNCIIICSIEN----FDPMGVHTGDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RNASLAVLREIGVNTGGSNVQFAVNPENGEMIVIEMNP 302


>gi|296446285|ref|ZP_06888231.1| Carbamoyl-phosphate synthase L chain ATP-binding [Methylosinus
           trichosporium OB3b]
 gi|296256186|gb|EFH03267.1| Carbamoyl-phosphate synthase L chain ATP-binding [Methylosinus
           trichosporium OB3b]
          Length = 671

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 74/220 (33%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E       L+   I +      A     DK+ SK+  S+  V V P  L 
Sbjct: 77  AVHPGYGFLSERAAFATALKEAGIVFIGPNPRAIEAMGDKIESKKFASAAKVNVVPGHLG 136

Query: 114 ----NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL----DLLQSSSWNHGDQ 165
                   +     I  P ++K   GG   G+ V  K   +         +++S    D+
Sbjct: 137 VIENGEEAVRIADAIGYPVMLKASAGGGGKGMRVAYKADEVVEGFTRARSEAASSFGDDR 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+++ +   +   V+GD   +V  +   +        K             +  +  
Sbjct: 197 VFIEKFIVNPRHIEIQVLGDKHGNVIHLNERECSIQRRNQK----VIEEAPSPLLDEETR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +   A    +A+        +F      +  ++LE+N 
Sbjct: 253 AAMGAQAVALAKAVDYDSAGTVEF-VAGQDKSFYFLEMNT 291


>gi|190338031|gb|AAI62583.1| Pc protein [Danio rerio]
          Length = 1181

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 31/220 (14%), Positives = 73/220 (33%), Gaps = 19/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E            + +            DK+ ++ +    GVPV P    
Sbjct: 115 AIHPGYGFLSERADFAQACAEAGVRFIGPSPEVVRKMGDKVEARALAIKAGVPVVPGTDA 174

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL----DLLQSSSWNHGDQ 165
            I   +   +       P + K   GG   G+ V++  + +         ++ +      
Sbjct: 175 PISCLQEAQEFAKTYDFPIIFKAAYGGGGRGMRVVRNYEELEENYQRAYSEALAAFGNGA 234

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDI 223
           L +E++++    +   ++GD   +V  +            K        + P A +   +
Sbjct: 235 LFVEKFIEKPRHIEVQILGDKYGNVIHLYERDCSIQRRHQK-----VVEIAPAAHLDSHL 289

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
              +   +    + +G       +FL D   +  +++E+N
Sbjct: 290 RDRLTLDSVNLAKQVGYENAGTVEFLVDKHGKH-YFIEVN 328


>gi|77456994|ref|YP_346499.1| carbamoyl phosphate synthase large subunit [Pseudomonas fluorescens
           Pf0-1]
 gi|77380997|gb|ABA72510.1| carbamoyl-phosphate synthase large chain [Pseudomonas fluorescens
           Pf0-1]
          Length = 1073

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 97/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D D            ++V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPDMADATYIEPIKWQTVAKIIEKERPDAVLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +    + +LE   +    +       + D+ R  + + + G+    S +
Sbjct: 89  TMGGQTALNCALDLEREGVLEKFGVEMIGANADTIDKAEDRSRFDKAMKAIGLECPRSGI 148

Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     +     +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHSMEEANAVLERLGFPCIIRPSFTMGGTGGGIAYNREEFEEICARGLDLSPTKELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D   + +   ++   D           +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKKDNCIIVCSIENFDPMGVHT----GDSITVAPAQTLTDKEYQIL 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F   P + ++  +E+N 
Sbjct: 265 RNASLAVLREIGVETGGSNVQFGICPDTGRMVVIEMNP 302



 Score = 67.5 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 78/197 (39%), Gaps = 10/197 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYV 129
           LE   +P   +   A   + D+ R +Q+V    +   P+  V        +   I  P V
Sbjct: 653 LEAAGVPIIGTSPDAIDRAEDRERFQQMVERLNLRQPPNATVRSEDEAVRAAAKIGYPLV 712

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTC-GVMGDASL 187
           ++P        + ++ K++ +   L  +   ++   +L++ +++  IE+    V     +
Sbjct: 713 VRPSYVLGGRAMEIVYKEEELKRYLRDAVQVSNDSPVLLDHFLNCAIEMDVDAVCDGKDV 772

Query: 188 DVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
            +  I         +    +     + LPA+I  ++ ++V+++A      +G  G+   +
Sbjct: 773 VIGAIMQHIEQAGVHSGDSACSLPPYSLPARIQDEMREQVKKMALE----LGVVGL--MN 826

Query: 248 FLFDPLSRKVFWLEINV 264
                    ++ +E+N 
Sbjct: 827 VQLALQGEDIYVIEVNP 843


>gi|18858695|ref|NP_571625.1| pyruvate carboxylase, mitochondrial [Danio rerio]
 gi|11545421|gb|AAG37836.1|AF295372_1 pyruvate carboxylase [Danio rerio]
          Length = 1180

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 31/220 (14%), Positives = 73/220 (33%), Gaps = 19/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E            + +            DK+ ++ +    GVPV P    
Sbjct: 115 AIHPGYGFLSERADFAQACAEAGVRFIGPSPEVVRKMGDKVEARALAIKAGVPVVPGTDA 174

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL----DLLQSSSWNHGDQ 165
            I   +   +       P + K   GG   G+ V++  + +         ++ +      
Sbjct: 175 PISCLQEAQEFAKTYDFPIIFKAAYGGGGRGMRVVRNYEELEENYQRAYSEALAAFGNGA 234

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDI 223
           L +E++++    +   ++GD   +V  +            K        + P A +   +
Sbjct: 235 LFVEKFIEKPRHIEVQILGDKYGNVIHLYERDCSIQRRHQK-----VVEIAPAAHLDSHL 289

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
              +   +    + +G       +FL D   +  +++E+N
Sbjct: 290 RDRLTLDSVNLAKQVGYENAGTVEFLVDKHGKH-YFIEVN 328


>gi|332532757|ref|ZP_08408631.1| biotin carboxylase of acetyl-CoA carboxylase [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332037784|gb|EGI74234.1| biotin carboxylase of acetyl-CoA carboxylase [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 446

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 78/222 (35%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+      +E     +         L  DK+ +   +   GVP  P    
Sbjct: 77  AIHPGYGFLAENADFADQVEQSGFVFIGPKGDTIRLMGDKVSAISAMRKAGVPCVPGSDG 136

Query: 111 -ILVNRF-TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGD 164
            +  ++   M     I  P +IK   GG   G+ V++ +  +   +     ++  +    
Sbjct: 137 PVSDDKERNMQIAKRIGYPVIIKAAGGGGGRGMRVVRSESELIDSIALTQQEAKQFFGNS 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E++++    +   V+ D   +   +            K          PA  I  +
Sbjct: 197 MVYMEKFLENPRHIEVQVLADGQGNAVHLGERDCSMQRRHQK-----VVEEAPAPGITAE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             K +      A   IG RG    +FL+   + + +++E+N 
Sbjct: 252 TRKFIGERCTRACIEIGYRGAGTFEFLY--ENGEFYFIEMNT 291


>gi|295098822|emb|CBK87911.1| carbamoyl-phosphate synthase, large subunit [Eubacterium
           cylindroides T2-87]
          Length = 725

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 54/292 (18%), Positives = 104/292 (35%), Gaps = 45/292 (15%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQIDVDRS---------------------VGLV 45
           G ++E + +   G     +L + G++V  I+ + +                        V
Sbjct: 21  GQAAEFDYA---GSQACQSLREEGYEVILINSNPATIMTDTTIADRVYIEPINLDFAKRV 77

Query: 46  LAHLKPDLAFNVLHGNFG--------EDGLVQAILELLEIPYTHSGILASALSMDKMRSK 97
           +   +PD     L G  G        EDG    IL+   +    + +LA   + D+   +
Sbjct: 78  IYKERPDAILGSLGGQTGLNLVVELHEDG----ILDEYGVEILGTDLLAINRAEDRELFR 133

Query: 98  QVVSSCGVPVCPSILVNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
           +++   G PV  S +V+      +    +  P V++P       G      ++ +     
Sbjct: 134 ELMQQIGEPVPHSRIVHTVEEAVEYCQKLGYPVVVRPAYTLGGTGGGFADNEEELRSICE 193

Query: 156 QSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVT-EIAVPKSDFYSYELKYSSLNSTH 213
                +   Q LIEQ + G  E+   V+ DA+ +     ++   D           +S  
Sbjct: 194 AGLKISPVHQCLIEQSIAGYKEIEYEVIRDANDNAIVVCSMENVDPVGIHT----GDSIV 249

Query: 214 VLPAKIPLDIYKEVQRLA-FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           V P +   D   ++ R A     +A+   G        DP S + + +E+N 
Sbjct: 250 VAPVQTLTDRENQMLRSASLKIIRALKICGGCNVQLALDPKSFRYYVIEVNP 301


>gi|260772204|ref|ZP_05881120.1| ribosomal protein S6 glutaminyl transferase [Vibrio metschnikovii
           CIP 69.14]
 gi|260611343|gb|EEX36546.1| ribosomal protein S6 glutaminyl transferase [Vibrio metschnikovii
           CIP 69.14]
          Length = 301

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 60/320 (18%), Positives = 124/320 (38%), Gaps = 49/320 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + +L       R  SL S K    A +  G +V  ID  R   + +   +P++ F     
Sbjct: 3   IGILS------RNASLYSTKRLIEACKQRGHEVKVIDALR-CYMNINSDQPEIHFKG-EE 54

Query: 61  NFGEDGLVQAI--------------LELLEIPYTHSGILASALSMDKMRSKQVVSSCGV- 105
             G D ++  I               E++ + Y  +  +A + S DK+RS Q++S  G+ 
Sbjct: 55  LGGFDAVIPRIGASVTFYGTAVLRQFEMMGV-YPANESVAISRSRDKLRSMQLLSRKGIG 113

Query: 106 -PVCPSILVNRFTMDSQHLISP-PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
            P+           D   ++   P VIK L+G   +G+++ +  ++     +  +     
Sbjct: 114 MPITGFASKPDDVKDLLDMVGGAPVVIKLLEGTQGIGVVLAETRKAAES--VIEAFMGLK 171

Query: 164 DQLLIEQYVD---GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
             +++++Y+    G ++ C V+GD  +   +    + +F S   +  + +   + P +  
Sbjct: 172 ANIMVQEYIKEAGGADIRCFVIGDKVIAAMKRQGAEGEFRSNLHRGGTASLVKITPLE-- 229

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280
                  ++ A  A + +G       D       R    +E+N  PG+  +       A 
Sbjct: 230 -------RKTAIDAAKIMGLNVAG-VD--LLRSERGPLVMEVNSSPGLEGI------EAA 273

Query: 281 AGYSFRELLLWMVEDASCLR 300
            G     L++  +E  +  R
Sbjct: 274 TGKDIASLIIEFIEKNAASR 293


>gi|271498835|ref|YP_003331860.1| acetyl-CoA carboxylase, biotin carboxylase [Dickeya dadantii
           Ech586]
 gi|270342390|gb|ACZ75155.1| acetyl-CoA carboxylase, biotin carboxylase [Dickeya dadantii
           Ech586]
          Length = 447

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 81/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         L  DK+ +   +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAEQVERSGFIFIGPRADTIRLMGDKVSAISAMKKAGVPCVPGSDG 136

Query: 112 -LVNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
            L +    +      I  P +IK   GG   G+ V++ ++ +   +     ++ +  + D
Sbjct: 137 PLGDDMDKNRAIGKRIGYPVIIKASGGGGGRGMRVVRSEKELEQSIAMTRAEAKAAFNND 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+Y++    +   V+ D   +   +A           K          PA  I  D
Sbjct: 197 MVYMEKYLENPRHVEIQVLADGQGNAIYLAERDCSMQRRHQK-----VVEEAPAPGITSD 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + + +      A   I  RG    +FLF   + + +++E+N 
Sbjct: 252 LRRYIGERCAKACVDINYRGAGTFEFLF--ENGEFYFIEMNT 291


>gi|213421203|ref|ZP_03354269.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Typhi str. E01-6750]
          Length = 104

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 18/45 (40%), Positives = 28/45 (62%)

Query: 51  PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
            D+ F ++HG  GEDG +Q +L +  +P+  S +L+SA  MDK  
Sbjct: 60  VDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLSSAACMDKDV 104


>gi|82701613|ref|YP_411179.1| carbamoyl-phosphate synthase, large subunit [Nitrosospira
           multiformis ATCC 25196]
 gi|82409678|gb|ABB73787.1| carbamoyl-phosphate synthase large subunit [Nitrosospira
           multiformis ATCC 25196]
          Length = 1075

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 35/238 (14%), Positives = 82/238 (34%), Gaps = 32/238 (13%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           LE   +P   +       + D+ R ++++   G+   P+           +   I  P V
Sbjct: 648 LEANGVPIIGTSPDMIDCAEDRERFQKMLHQLGLKQPPNRTARTAEEAFAAAEEIGYPLV 707

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL--------IEQYVDGIELTCGV 181
           ++P        + ++ +   +   + ++   +H   +L        +E  VD +     V
Sbjct: 708 VRPSYVLGGRAMEIVHEQTHLERYMKEAVKVSHDSPVLLDHFLNDAVEVDVDAVSDGENV 767

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241
           +    ++  E A   S            ++  + P  +   +  E++R      +A+   
Sbjct: 768 LIGGIMEHIEQAGVHSG----------DSACSLPPYSLSARLQDELRRQTAAMARALNVV 817

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
           G+    F     +  V+ LE+N +   T     P ++   G    ++       A C+
Sbjct: 818 GLMNVQFAI--QNDIVYVLEVNPRASRT----VPFVSKATGIPLAKI------SARCM 863



 Score = 63.2 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 48/278 (17%), Positives = 99/278 (35%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGF-------------------KVSQIDVD--RSVGLVLAHLKPDLAFN 56
           SG     AL + G+                    V+ I+      V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYRTILVNSNPATIMTDPETADVTYIEPIIWPMVEKIIAIERPDALLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      +L+   +    +   A   + D+ + KQ ++  G+    S +
Sbjct: 89  TMGGQTALNCALDLAKNGVLDKYGVELIGASREAIDKAEDREKFKQAMTRIGLGSARSAI 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     +  Q ++  P +I+P       G  +    +       +    +   +LLIE+
Sbjct: 149 AHSLEEALQVQAMVGYPAIIRPSFTLGGSGGGIAYNREEFLEICERGLEASPTKELLIEE 208

Query: 171 YVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            V G  E    V+ D + + +   A+   D           +S  V PA+ +    Y+ +
Sbjct: 209 SVIGWKEFEMEVIRDRNDNCIIVCAIENVDPMGVHT----GDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P   ++  +E+N 
Sbjct: 265 RDASIAVLREIGVETGGSNVQFAINPEDGRMLVIEMNP 302


>gi|169783542|ref|XP_001826233.1| carbamoyl-phosphate synthase (glutamine-hydrolysing) large subunit
           [Aspergillus oryzae RIB40]
 gi|238493361|ref|XP_002377917.1| carbamoyl-phosphate synthase, large subunit [Aspergillus flavus
           NRRL3357]
 gi|83774977|dbj|BAE65100.1| unnamed protein product [Aspergillus oryzae]
 gi|220696411|gb|EED52753.1| carbamoyl-phosphate synthase, large subunit [Aspergillus flavus
           NRRL3357]
          Length = 1175

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 58/291 (19%), Positives = 104/291 (35%), Gaps = 41/291 (14%)

Query: 6   GGIS----SEREVSLSSGKACASALEDAGFK--------------------VSQIDVDRS 41
           GG+S     E + S   G     AL++AG +                    V  + V   
Sbjct: 108 GGLSIGQAGEFDYS---GSQALKALKEAGVESVLINPNIATIQTDHKLADEVYYLPVTPE 164

Query: 42  -VGLVLAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRS 96
            V  V+   +PD  F    G    +  VQ     I E   +    + I     S D+   
Sbjct: 165 YVTYVIERERPDAIFLSFGGQTALNLGVQMNRMGIFERYGVRVLGTSIKTLETSEDRDLF 224

Query: 97  KQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154
            + ++   +P+  SI VN     + +   +  P +++       LG       + +    
Sbjct: 225 AKALNEINIPIAESIAVNTVDEALKAAEEVGYPIIVRSAYALGGLGSGFANNPEELR--N 282

Query: 155 LQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTH 213
           L S S     Q+L+E+ + G  E+   V+ DA  D   I V   + +   L   + +S  
Sbjct: 283 LASRSLTLAPQILVEKSLRGWKEVEYEVVRDA--DNNCITVCNMENFD-PLGIHTGDSIV 339

Query: 214 VLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
           V P++ +  + Y  ++  A    + +G  G     +   P       +E+N
Sbjct: 340 VAPSQTLSDEEYHMLRTAAIKIVRHLGVVGECNVQYALQPDGLDYRVIEVN 390



 Score = 52.0 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/176 (14%), Positives = 59/176 (33%), Gaps = 12/176 (6%)

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVI 130
           E        +  +    + D+ +   ++ S GV       +            +  P ++
Sbjct: 738 ETGGANVLGTDPVDIDKAEDRHKFSSILDSIGVDQPAWKELTSVADAERFAESVGYPVLV 797

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL----TCGVMGDAS 186
           +P    S   + VI     +   LL +S+ +    ++I ++++G +          G   
Sbjct: 798 RPSYVLSGAAMNVIYSQDELKEKLLNASAVSPDHPVVITKFIEGAQEIDVDAVASNGKLL 857

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
           L      V  +  +S +       +  + PA +   +   V+ +A    +A    G
Sbjct: 858 LHAVSEHVEPAGVHSGDA------TLVLPPAYLDESVMGRVKEIAEKVAKAWNITG 907


>gi|333029024|ref|ZP_08457087.1| putative carbamoyl-phosphate synthase large chain [Streptomyces sp.
           Tu6071]
 gi|332742232|gb|EGJ72674.1| putative carbamoyl-phosphate synthase large chain [Streptomyces sp.
           Tu6071]
          Length = 370

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 37/216 (17%), Positives = 76/216 (35%), Gaps = 27/216 (12%)

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVIKKD 147
           + DK     + +SCGV     I              +  P +IKP  G  S G+  I   
Sbjct: 69  AGDKGAFHAITASCGVSGYGWIASEDEEEVVAKAAGLRFPLMIKPTDGSGSKGVTQIDAP 128

Query: 148 QSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYS 207
           + +   +  + S++    ++ E++V G  +T  V           ++   DF        
Sbjct: 129 EELSGAVAYARSYSASRTVIAEEFVPGRPVTVDVFM-RDGRAVMTSIKDEDFID-----G 182

Query: 208 SLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV-- 264
                 +  A++     + ++  A    +A+G   G +  D +  P  ++   +E N   
Sbjct: 183 GFVLRRMRTAQLAPPAQRHLEATAERLCRALGIDNGPANFDMVLGPDGQE-HVIEANARL 241

Query: 265 ----QPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                P +        +AA  G    +++  ++  A
Sbjct: 242 GGDGIPRL--------LAAAYGI---DVVRALISLA 266


>gi|261379319|ref|ZP_05983892.1| carbamoyl-phosphate synthase, large subunit [Neisseria subflava
           NJ9703]
 gi|284797755|gb|EFC53102.1| carbamoyl-phosphate synthase, large subunit [Neisseria subflava
           NJ9703]
          Length = 1071

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/199 (14%), Positives = 73/199 (36%), Gaps = 13/199 (6%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYVIKPL 133
            +    +   +   + D+ R ++V++  G+   P+ + +           I  P V++P 
Sbjct: 652 GVNIIGTSADSIDAAEDRERFQKVLNDLGLRQPPNRIAHNEEEALVKAEEIGYPLVVRPS 711

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEI 192
                  + ++   + +   + ++   +    +L++ ++ + IE+    + D    V   
Sbjct: 712 YVLGGRAMQIVHSTEELQKYMREAVQVSEDSPVLLDFFLNNAIEVDVDCVSDGQDVVIGG 771

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            +   +       +S  +   + P  +  +I  E++R       A+G  G+    F    
Sbjct: 772 IMQHVEQAGI---HSGDSGCSLPPYSLSEEIQDEIRRQTKAMAYALGVVGLMNVQFAV-- 826

Query: 253 LSRKVFWLEIN-----VQP 266
               VF LE+N       P
Sbjct: 827 QDGVVFVLEVNPRASRTIP 845



 Score = 66.3 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 50/278 (17%), Positives = 101/278 (36%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +              DV        ++V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYKVILVNSNPATIMTDPEMADVTYIEPIMWQTVEKIIAKERPDAILP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      +L    +    +   A   + D+ R K+ +   G+    S +
Sbjct: 89  TMGGQTALNCALDLARNGVLAKYNVELIGATEDAIDKAEDRGRFKEAMEKIGLSCPKSFV 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     + +Q  +  P +I+P       G  +            +    +   +LLIEQ
Sbjct: 149 CHTMNEALAAQEQVGFPTLIRPSFTMGGSGGGIAYNKDEFLAICERGFDASPTHELLIEQ 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            V G  E    V+ D + +   I   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SVLGWKEYEMEVVRDKNDNCIIICSIEN----FDPMGVHTGDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RNASLAVLREIGVDTGGSNVQFAVNPENGEMIVIEMNP 302


>gi|139439440|ref|ZP_01772881.1| Hypothetical protein COLAER_01901 [Collinsella aerofaciens ATCC
           25986]
 gi|133775219|gb|EBA39039.1| Hypothetical protein COLAER_01901 [Collinsella aerofaciens ATCC
           25986]
          Length = 1104

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 45/278 (16%), Positives = 94/278 (33%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG      L++ GF+V  +         D                +  V+   +PD    
Sbjct: 29  SGAQACKVLKEDGFEVILVNSNPATIMTDPGLADRTYVEPITAEFIERVIKKERPDALLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--S 110
            L G  G +  V+      L+   +      + A     D+    + ++  G+ V     
Sbjct: 89  TLGGQTGLNAAVELAKDGTLDKYGVEMIGCDLAAIERGEDRKLFNEAMAEIGLEVARSGY 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                        +  P V++P       G  +    + +   + Q    +   ++L+E+
Sbjct: 149 AYSVADAEAIAERVGYPCVLRPSFTLGGAGGGIAHAHEELVSIVSQGLELSPAHEVLVEE 208

Query: 171 YVDG-IELTCGVMGDASL-DVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            ++G  E    VM D +   +   ++   D           +S  V PA+ +    Y+ +
Sbjct: 209 SIEGWKEYEMEVMRDHAGNGIIVCSIENLDPMGVHT----GDSITVAPAQTLSDLEYQRM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RVASLAILEKIGVETGGSNVQFAVNPQTGRLIVIEMNP 302



 Score = 60.1 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 29/225 (12%), Positives = 80/225 (35%), Gaps = 12/225 (5%)

Query: 71  ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ--HLISPPY 128
           +LE   +    +   A   + D+ R   ++   G+   P+     F         I  P 
Sbjct: 665 MLEESGVNIMGTKPDAIDFAEDRERFAALLDKLGIMYPPAGQATSFEEAEAVAAHIGYPL 724

Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASL 187
           +++P       G+++    + +   + +++  +    + ++++++G IE     + D   
Sbjct: 725 LVRPSYVLGGRGMMIAYDAEHLRDYMAEAARISPDYPVYLDRFLEGAIESDVDALCDGEE 784

Query: 188 DVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
                 +   +       +S  ++T + P      +  +++        A+G RG+   +
Sbjct: 785 VYIGGILEHIEEAGI---HSGDSATCIPPFSFSESLQAKLRETTRRIAMALGVRGL--VN 839

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
             +      V+ +E N +   T     P ++   G    +    +
Sbjct: 840 VQYAIKGETVYVIEANPRASRT----VPFISKATGVPLAKCAARI 880


>gi|218283816|ref|ZP_03489730.1| hypothetical protein EUBIFOR_02324 [Eubacterium biforme DSM 3989]
 gi|218215576|gb|EEC89114.1| hypothetical protein EUBIFOR_02324 [Eubacterium biforme DSM 3989]
          Length = 1067

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 25/193 (12%), Positives = 68/193 (35%), Gaps = 9/193 (4%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVC--PSILVNRFTMDSQHLISPPYVIKPL 133
            +    + + +  L+ D+   + ++    +P     + +    ++   + I  P +++P 
Sbjct: 650 GVKILGTSLHSIDLAEDRHEFEAMLHKLNIPQPQGETAVTVEESLVIANKIGYPVLVRPS 709

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSW-NHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192
                  + ++  D  + + +  +    +H   +L+++Y+ G EL    + D        
Sbjct: 710 YVLGGRAMEIVHNDDELRVYMATAVKEISHDAPILVDKYIVGKELEIDAIADGKNVYIPG 769

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
            +   +           +S  V P + I   +   +        +     G+    F+ D
Sbjct: 770 VMEHIERAGVHS----GDSISVYPTQTISQQVKDTIIDYGTRIGKGFEFVGLYNIQFIVD 825

Query: 252 PLSRKVFWLEINV 264
                V+ LE+N 
Sbjct: 826 KEDN-VYVLEVNP 837



 Score = 60.5 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 54/291 (18%), Positives = 101/291 (34%), Gaps = 43/291 (14%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQID-------VDRSVGL--------------V 45
           G ++E + +   G     +L + G++V  I+        D ++                V
Sbjct: 21  GQAAEFDYA---GSQACQSLREEGYEVILINSNPATIMTDSTIADRVYIEPINLDFAKRV 77

Query: 46  LAHLKPDLAFNVLHGNFG--------EDGLVQAILELLEIPYTHSGILASALSMDKMRSK 97
           +   +PD     L G  G        EDG    IL+   +    + +LA   + D+   +
Sbjct: 78  IYKERPDAILGSLGGQTGLNLVVELHEDG----ILDEYGVEILGTDLLAINRAEDRELFR 133

Query: 98  QVVSSCGVPVCPSILVNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
            ++     PV  S +V+           +  P V++P       G      +  +     
Sbjct: 134 SLMQDINEPVPESTIVHTVEEAVAFCETLGYPVVVRPAYTLGGTGGGFADDEAELRDICE 193

Query: 156 QSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHV 214
                +   Q LIEQ + G  E+   V+ DA+ +   I V   +       ++  +S  V
Sbjct: 194 AGLKASPVHQCLIEQSIAGYKEIEYEVIRDANDNA--IVVCSMENVDPVGVHT-GDSFVV 250

Query: 215 LPAKIPLDIYKEVQRLA-FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            P +   D    +   A     +A+   G        +P S K + +E+N 
Sbjct: 251 APVQTLTDRENAMLSSASLKIIRALKICGGCNVQLALNPDSFKYYVIEVNP 301


>gi|167912595|ref|ZP_02499686.1| acetyl-CoA carboxylase biotin carboxylase subunit [Burkholderia
           pseudomallei 112]
          Length = 427

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 34/222 (15%), Positives = 78/222 (35%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         +  DK+ +KQ +   GVP  P    
Sbjct: 49  AIHPGYGFLSENADFAERVEQSGFTFIGPRPDTIRMMGDKVTAKQTMIRTGVPCVPGSDG 108

Query: 112 ---LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
                 +  +     +  P +IK   GG   G+ V+  + ++   +     ++       
Sbjct: 109 ALPEDPKEIVKIARTVGYPVIIKAAGGGGGRGMRVVHTEAALVNAVNMTREEAGRAFGNP 168

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
           Q+ +E++++    +   V+ D+  +   +            K          PA  I   
Sbjct: 169 QVYMEKFLENPRHIEIQVLSDSHKNAVWLGERDCSMQRRHQK-----VIEEAPAPGIARR 223

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +   +      A + +G  G    +FL+   + + +++E+N 
Sbjct: 224 LIDRIGDRCADACKKMGYLGAGTFEFLY--ENNEFYFIEMNT 263


>gi|121634229|ref|YP_974474.1| carbamoyl phosphate synthase large subunit [Neisseria meningitidis
           FAM18]
 gi|161869361|ref|YP_001598528.1| carbamoyl phosphate synthase large subunit [Neisseria meningitidis
           053442]
 gi|120865935|emb|CAM09672.1| carbamoyl phosphate synthase large subunit [Neisseria meningitidis
           FAM18]
 gi|161594914|gb|ABX72574.1| carbamoyl phosphate synthase large subunit [Neisseria meningitidis
           053442]
 gi|325131499|gb|EGC54206.1| carbamoyl-phosphate synthase, large subunit [Neisseria meningitidis
           M6190]
 gi|325137545|gb|EGC60127.1| carbamoyl-phosphate synthase, large subunit [Neisseria meningitidis
           ES14902]
          Length = 1071

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/192 (14%), Positives = 73/192 (38%), Gaps = 8/192 (4%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYVIKPL 133
            +    +   +   + D+ R ++V++  G+   P+ + +           I  P V++P 
Sbjct: 652 GVNIIGTSADSIDAAEDRERFQKVLNDLGLRQPPNRIAHNEEEALVKAEEIGYPLVVRPS 711

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEI 192
                  + ++   +++   + ++   +    +L++ ++ + IE+    + D    V   
Sbjct: 712 YVLGGRAMQIVHSAEALQKYMREAVQVSEDSPVLLDFFLNNAIEVDVDCVSDGKDVVIGG 771

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            +   +       +S  +   + P  +  +I  E++R       A+G  G+    F    
Sbjct: 772 IMQHVEQAGI---HSGDSGCSLPPYSLSEEIQDEIRRQTKAMAYALGVVGLMNVQFAV-- 826

Query: 253 LSRKVFWLEINV 264
               VF LE+N 
Sbjct: 827 QDGVVFVLEVNP 838



 Score = 66.3 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 50/278 (17%), Positives = 101/278 (36%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +              DV        ++V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYKVILVNSNPATIMTDPEMADVTYIEPIMWQTVEKIIAKERPDAILP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      +L    +    +   A   + D+ R K+ +   G+    S +
Sbjct: 89  TMGGQTALNCALDLARNGVLAKYNVELIGATEDAIDKAEDRGRFKEAMEKIGLSCPKSFV 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     + +Q  +  P +I+P       G  +            +    +   +LLIEQ
Sbjct: 149 CHTMNEALAAQEQVGFPTLIRPSFTMGGSGGGIAYNKDEFLAICERGFDASPTHELLIEQ 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            V G  E    V+ D + +   I   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SVLGWKEYEMEVVRDKNDNCIIICSIEN----FDPMGVHTGDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RNASLAVLREIGVDTGGSNVQFAVNPENGEMIVIEMNP 302


>gi|91214872|ref|ZP_01251845.1| glutathione synthase/ribosomal protein S6 modification enzyme
           (glutaminyl transferase) [Psychroflexus torquis ATCC
           700755]
 gi|91187299|gb|EAS73669.1| glutathione synthase/ribosomal protein S6 modification enzyme
           (glutaminyl transferase) [Psychroflexus torquis ATCC
           700755]
          Length = 486

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/183 (15%), Positives = 67/183 (36%), Gaps = 14/183 (7%)

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTM-DSQHLISPPYVIKPLKGGSSLGIIVIKKDQ 148
             +K+   + +   G+P   +++V++    +   +   P V+K      S G+   K + 
Sbjct: 279 CCNKVFMAEALQKNGIPTPKTVIVHKDNKHEVLKITGLPCVLKSPDSTFSFGVKKAKNED 338

Query: 149 SIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSY----E 203
                 L +      D ++ +++     +   G++ D         + K  +  Y    +
Sbjct: 339 EFES--LMTEMLKTSDLVIAQEFTFSEYDWRIGILDDKPFYACRYFMAKGHWQIYNWSAD 396

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            K     +          D+ ++V + A  + + +G +G+   D     +  K   +EIN
Sbjct: 397 KKDDQDGNADCFAI---EDVPEKVMKAALKSAKIMG-KGLYGID--IKEVEGKALVIEIN 450

Query: 264 VQP 266
             P
Sbjct: 451 DNP 453


>gi|78187505|ref|YP_375548.1| carbamoyl-phosphate synthase, medium subunit [Chlorobium luteolum
           DSM 273]
 gi|78167407|gb|ABB24505.1| carbamoyl-phosphate synthase large subunit [Chlorobium luteolum DSM
           273]
          Length = 492

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 47/278 (16%), Positives = 99/278 (35%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G++V  +         D++              V  ++   KPD    
Sbjct: 29  SGTQACRALKEDGYRVILVNSNPATIMTDIELADATYIEPITPEYVQKIIEREKPDALLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  V      ILE   +    + + A   + ++      +   G+ +     
Sbjct: 89  TMGGQTALNTAVSLAESGILERNGVELIGAKLRAIRKAENRELFSDAMKKLGLEMAKGFF 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           V   +   D+   I  P +I+P       G    +        + +  + +   ++L+E+
Sbjct: 149 VRNEKEARDALEEIGLPIIIRPSFTLGGTGGGFAETKSDYYEAVRRGLAESPIGEVLVEE 208

Query: 171 YVDG-IELTCGVMGDASLDV-TEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + +V    ++   D           +S  V PA+ +    Y+E+
Sbjct: 209 CLFGWKEFELEVIRDLADNVIIVCSIENVDPMGVHT----GDSITVAPAQTLTDRQYQEL 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F   P + ++  +E+N 
Sbjct: 265 RDASVRIIREIGVETGGSNIQFAIHPRTGRIVVIEMNP 302


>gi|88855568|ref|ZP_01130232.1| pyruvate carboxylase [marine actinobacterium PHSC20C1]
 gi|88815475|gb|EAR25333.1| pyruvate carboxylase [marine actinobacterium PHSC20C1]
          Length = 1134

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 38/250 (15%), Positives = 84/250 (33%), Gaps = 20/250 (8%)

Query: 28  DAGFKVS-QIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           + G  V   +DV   +  V      D  +   +G   E+  +        I +       
Sbjct: 53  EEGHPVRAYLDVSE-IIRVAKECGADAIYPG-YGFLSENPELAHAAADAGIAFIGPPTKV 110

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD---SQHLISPPYVIKPLKGGSSLGIIV 143
             ++ +K+ +K+   + GVPV  S   +R   +       I  P   K + GG   G+  
Sbjct: 111 LEMAGNKVTAKEHAIAAGVPVLKSTPASRDVDELLAGADDIGFPIFAKAVAGGGGRGMRR 170

Query: 144 IKKDQSIPLDLLQS-----SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD 198
           ++K + +   L+ +     S++      L +  V    +   ++ D+  +          
Sbjct: 171 VEKKEDLRDALVAAMREADSAFGDPTMFLEQAVVRPRHIEVQILADSHGNTI-----HLF 225

Query: 199 FYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS--- 254
                ++        + PA  +     + +   A    ++I        +FL D      
Sbjct: 226 ERDCSVQRRHQKVVEIAPAPNLDEKTRQAMYSHAIAFAKSIDYVNAGTVEFLLDTAGERK 285

Query: 255 RKVFWLEINV 264
            +  ++E+N 
Sbjct: 286 GEHVFIEMNP 295


>gi|83747881|ref|ZP_00944913.1| Biotin carboxylase [Ralstonia solanacearum UW551]
 gi|207739270|ref|YP_002257663.1| biotin carboxylase protein [Ralstonia solanacearum IPO1609]
 gi|83725414|gb|EAP72560.1| Biotin carboxylase [Ralstonia solanacearum UW551]
 gi|206592643|emb|CAQ59549.1| biotin carboxylase protein [Ralstonia solanacearum IPO1609]
          Length = 455

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 38/223 (17%), Positives = 81/223 (36%), Gaps = 23/223 (10%)

Query: 57  VLHGNFG---ED-GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            +H  +G   E+ G V+ + +   + +            DK+ +K+ +   GVP  P   
Sbjct: 77  AIHPGYGFLSENAGFVERVTD-AGLTFIGPSADCIRTMGDKVSAKRAMREAGVPCVPGPD 135

Query: 113 VNRFTMDSQ-----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHG 163
            +     +      H I  P ++K   GG   G+ V+++  ++   L     ++      
Sbjct: 136 TSLPDDPAAVLAIAHEIGFPVIVKAAGGGGGRGMRVVQEAAALADALTLTREEARRAFGN 195

Query: 164 DQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPL 221
            ++ IE+++     +   V+ D       +           L+          PA  I  
Sbjct: 196 PEVYIEKFLTHPRHVEIQVLADRYGHAIWL-----GSRDCSLQRRHQKVLEEAPAPGIDP 250

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +  EV      A + +G  G    +FL+   +   +++E+N 
Sbjct: 251 SLIAEVGERCAAACRQVGYCGAGTFEFLY--ENGAFYFIEMNT 291


>gi|254672417|emb|CBA05752.1| carbamoyl-phosphate synthase large chain [Neisseria meningitidis
           alpha275]
          Length = 1071

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/192 (14%), Positives = 73/192 (38%), Gaps = 8/192 (4%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYVIKPL 133
            +    +   +   + D+ R ++V++  G+   P+ + +           I  P V++P 
Sbjct: 652 GVNIIGTSADSIDAAEDRERFQKVLNDLGLRQPPNRIAHNEEEALVKAEEIGYPLVVRPS 711

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEI 192
                  + ++   +++   + ++   +    +L++ ++ + IE+    + D    V   
Sbjct: 712 YVLGGRAMQIVHSAEALQKYMREAVQVSEDSPVLLDFFLNNAIEVDVDCVSDGKDVVIGG 771

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            +   +       +S  +   + P  +  +I  E++R       A+G  G+    F    
Sbjct: 772 IMQHVEQAGI---HSGDSGCSLPPYSLSEEIQDEIRRQTKAMAYALGVVGLMNVQFAV-- 826

Query: 253 LSRKVFWLEINV 264
               VF LE+N 
Sbjct: 827 QDGVVFVLEVNP 838



 Score = 66.3 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 50/278 (17%), Positives = 101/278 (36%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +              DV        ++V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYKVILVNSNPATIMTDPEMADVTYIEPIMWQTVEKIIAKERPDAILP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      +L    +    +   A   + D+ R K+ +   G+    S +
Sbjct: 89  TMGGQTALNCALDLARNGVLAKYNVELIGATEDAIDKAEDRGRFKEAMEKIGLSCPKSFV 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     + +Q  +  P +I+P       G  +            +    +   +LLIEQ
Sbjct: 149 CHTMNEALAAQEQVGFPTLIRPSFTMGGSGGGIAYNKDEFLAICERGFDASPTHELLIEQ 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            V G  E    V+ D + +   I   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SVLGWKEYEMEVVRDKNDNCIIICSIEN----FDPMGVHTGDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RNASLAVLREIGVNTGGSNVQFAVNPENGEMIVIEMNP 302


>gi|240117100|ref|ZP_04731162.1| carbamoyl phosphate synthase large subunit [Neisseria gonorrhoeae
           PID1]
 gi|240124927|ref|ZP_04737813.1| carbamoyl phosphate synthase large subunit [Neisseria gonorrhoeae
           SK-92-679]
 gi|268602785|ref|ZP_06136952.1| carbamoyl-phosphate synthase subunit large [Neisseria gonorrhoeae
           PID1]
 gi|268683505|ref|ZP_06150367.1| carbamoyl-phosphate synthase subunit large [Neisseria gonorrhoeae
           SK-92-679]
 gi|268586916|gb|EEZ51592.1| carbamoyl-phosphate synthase subunit large [Neisseria gonorrhoeae
           PID1]
 gi|268623789|gb|EEZ56189.1| carbamoyl-phosphate synthase subunit large [Neisseria gonorrhoeae
           SK-92-679]
          Length = 1071

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/192 (14%), Positives = 73/192 (38%), Gaps = 8/192 (4%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYVIKPL 133
            +    +   +   + D+ R ++V++  G+   P+ + +           I  P V++P 
Sbjct: 652 GVNIIGTSADSIDAAEDRERFQKVLNDLGLRQPPNRIAHNEEEALVKAEEIGYPLVVRPS 711

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEI 192
                  + ++   +++   + ++   +    +L++ ++ + IE+    + D    V   
Sbjct: 712 YVLGGRAMQIVHSAEALQKYMREAVQVSEDSPVLLDFFLNNAIEVDVDCVSDGKDVVIGG 771

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            +   +       +S  +   + P  +  +I  E++R       A+G  G+    F    
Sbjct: 772 IMQHVEQAGI---HSGDSGCSLPPYSLSEEIQDEIRRQTKAMAYALGVVGLMNVQFAV-- 826

Query: 253 LSRKVFWLEINV 264
               VF LE+N 
Sbjct: 827 QDGVVFVLEVNP 838



 Score = 67.5 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 50/278 (17%), Positives = 101/278 (36%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +              DV        ++V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYKVILVNSNPATIMTDPEMADVTYIEPIMWQTVEKIIAKERPDAILP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      +L    +    +   A   + D+ R K+ +   G+    S +
Sbjct: 89  TMGGQTALNCALDLARNGVLAKYNVELIGATEDAIDKAEDRGRFKEAMEKIGLSCPKSFV 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     + +Q  +  P +I+P       G  +            +    +   +LLIEQ
Sbjct: 149 CHTMNEALAAQEQVGFPTLIRPSFTMGGSGGGIAYNKDEFLAICERGFDASPTHELLIEQ 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            V G  E    V+ D + +   I   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SVLGWKEYEMEVVRDKADNCIIICSIEN----FDPMGVHTGDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RNASLAVLREIGVDTGGSNVQFAVNPENGEMIVIEMNP 302


>gi|240112150|ref|ZP_04726640.1| carbamoyl phosphate synthase large subunit [Neisseria gonorrhoeae
           MS11]
 gi|254492955|ref|ZP_05106126.1| carbamoyl-phosphate synthase subunit large chain [Neisseria
           gonorrhoeae 1291]
 gi|268598207|ref|ZP_06132374.1| carbamoyl-phosphate synthase subunit large [Neisseria gonorrhoeae
           MS11]
 gi|226511995|gb|EEH61340.1| carbamoyl-phosphate synthase subunit large chain [Neisseria
           gonorrhoeae 1291]
 gi|268582338|gb|EEZ47014.1| carbamoyl-phosphate synthase subunit large [Neisseria gonorrhoeae
           MS11]
          Length = 1071

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/192 (14%), Positives = 73/192 (38%), Gaps = 8/192 (4%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYVIKPL 133
            +    +   +   + D+ R ++V++  G+   P+ + +           I  P V++P 
Sbjct: 652 GVNIIGTSADSIDAAEDRERFQKVLNDLGLRQPPNRIAHNEEEALVKAEEIGYPLVVRPS 711

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEI 192
                  + ++   +++   + ++   +    +L++ ++ + IE+    + D    V   
Sbjct: 712 YVLGGRAMQIVHSAEALQKYMREAVQVSEDSPVLLDFFLNNAIEVDVDCVSDGKDVVIGG 771

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            +   +       +S  +   + P  +  +I  E++R       A+G  G+    F    
Sbjct: 772 IMQHVEQAGI---HSGDSGCSLPPYSLSEEIQDEIRRQTKAMAYALGVVGLMNVQFAV-- 826

Query: 253 LSRKVFWLEINV 264
               VF LE+N 
Sbjct: 827 QDGVVFVLEVNP 838



 Score = 67.5 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 50/278 (17%), Positives = 101/278 (36%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +              DV        ++V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYKVILVNSNPATIMTDPEMADVTYIEPIMWQTVEKIIAKERPDAILP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      +L    +    +   A   + D+ R K+ +   G+    S +
Sbjct: 89  TMGGQTALNCALDLARNGVLAKYNVELIGATEDAIDKAEDRGRFKEAMEKIGLSCPKSFV 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     + +Q  +  P +I+P       G  +            +    +   +LLIEQ
Sbjct: 149 CHTMNEALAAQEQVGFPTLIRPSFTMGGSGGGIAYNKDEFLAICERGFDASPTHELLIEQ 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            V G  E    V+ D + +   I   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SVLGWKEYEMEVVRDKADNCIIICSIEN----FDPMGVHTGDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RNASLAVLREIGVDTGGSNVQFAVNPENGEMIVIEMNP 302


>gi|118496635|ref|YP_897685.1| carbamoyl phosphate synthase large subunit [Francisella tularensis
           subsp. novicida U112]
 gi|194323942|ref|ZP_03057717.1| carbamoyl-phosphate synthase, large subunit [Francisella tularensis
           subsp. novicida FTE]
 gi|118422541|gb|ABK88931.1| carbamoyl-phosphate synthase large chain [Francisella novicida
           U112]
 gi|194321839|gb|EDX19322.1| carbamoyl-phosphate synthase, large subunit [Francisella tularensis
           subsp. novicida FTE]
          Length = 1094

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 48/278 (17%), Positives = 100/278 (35%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG      L++ G+ V  +         D               SVG ++A  +PD    
Sbjct: 29  SGTQACKVLKEDGYTVYLVNSNPATIMTDPTTADKIFIEPITVESVGKIIARERPDAILP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      ILE   +    +   +   + ++ R  + ++  G+ V  +++
Sbjct: 89  TVGGQTALNCALALDKAGILEKYNVEMLGAKADSIDKAENRERFNKAMAKIGLEVPRNVV 148

Query: 113 VNRFTMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           V       + L  I  P +I+P       G  +    +     +    S +  +++LI++
Sbjct: 149 VQSMEQAYKALEDIGLPAIIRPSFTLGGSGGGIAYTKEEFEKIVKNGLSLSPTNEVLIDE 208

Query: 171 YVDG-IELTCGVMGDASL-DVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEV 227
            + G  E    V+ D +   +   ++   D           +S  V PA  +    Y+ +
Sbjct: 209 SILGWKEYEMEVIRDKADNSIIVCSIENIDPMGIHT----GDSITVAPALTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P   K+  +E+N 
Sbjct: 265 RDASIAVLREIGVETGGSNVQFAVNPKDGKLVVIEMNP 302



 Score = 61.3 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 34/221 (15%), Positives = 85/221 (38%), Gaps = 13/221 (5%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI--SPPYVIKPL 133
            IP   +      L+ D+ R K+++   G+    + +        + ++    P V++P 
Sbjct: 673 NIPILGTDPDKIDLAEDRERFKELLDKVGLKQPLNTIAYTINELKKKIVNVGYPVVVRPS 732

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEI 192
                  + +I   + +   +  +S       +LI++++ D  EL    + D    V   
Sbjct: 733 NVLGGRAMEIIHSQEELDAYIKTNSKCILEGPILIDKFLEDATELDVDALADGGERVFVA 792

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
            + +   +  E    S +S   +P + +  +  +EV++      + +   G+    F + 
Sbjct: 793 GIME---HIEEAGIHSGDSACSIPTRSLSNEQIEEVKQATIKLARELNVIGLMNVQFAY- 848

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
             + +++ +E+N +   T     P +A   G S   +   +
Sbjct: 849 -QNGQLYVIEVNPRASRT----VPFVAKATGNSIANIATKL 884


>gi|297191504|ref|ZP_06908902.1| pyruvate carboxylase [Streptomyces pristinaespiralis ATCC 25486]
 gi|297150956|gb|EFH30892.1| pyruvate carboxylase [Streptomyces pristinaespiralis ATCC 25486]
          Length = 1021

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 44/260 (16%), Positives = 85/260 (32%), Gaps = 17/260 (6%)

Query: 15  SLSSGKACAS-ALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILE 73
           SL   KA  +  + + G  V        V         D  +   +G   E+  + A   
Sbjct: 39  SLHRAKADEAYQIGEPGHPVRAYLSVDEVIKAARKAGADAIYPG-YGFLSENPDLAAACA 97

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT---MDSQHLISPPYVI 130
              I +         L+ +K R+       GVPV  S   +      + +   I  P  +
Sbjct: 98  EAGIAFVGPPASVLHLTGNKSRAVAAAREAGVPVLKSSEPSEDVDTLVAASKDIGFPVFV 157

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQS-----SSWNHGDQLLIEQYVDGIELTCGVMGDA 185
           K + GG   G+  + +   +   +  +     S++      L +  V+   +   ++ DA
Sbjct: 158 KAVAGGGGRGMRRVAEPSELREAIDAAMREARSAFGDATVFLEQAVVNPRHIEVQILADA 217

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGIS 244
             +V  +           ++        + PA  +  ++   +   A    + IG     
Sbjct: 218 EGNVVHLYE-----RDCSVQRRHQKVVEIAPAPNLDPELRARICADAVAFARHIGYVNAG 272

Query: 245 RSDFLFDPLSRKVFWLEINV 264
             +FL D     VF  E+N 
Sbjct: 273 TVEFLVDERGNHVFI-EMNP 291


>gi|332638911|ref|ZP_08417774.1| biotin carboxylase [Weissella cibaria KACC 11862]
          Length = 458

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 77/220 (35%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+ +   +L  + I +         L  DK  +++ + + G+PV P    
Sbjct: 77  AVHPGYGFLSENAMFVNMLHDVGIDFIGPRAETIDLMGDKAAARETMRAAGIPVIPGSIG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD----QSIPLDLLQSSSWNHGDQ 165
            +  ++   +    I  P ++K   GG   G+  I       +       ++       +
Sbjct: 137 TLATSQEAAEISAEIGYPVMLKAAAGGGGKGMRFIPDATTLVEQFDRAQAEAVRAFGSGE 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+ + D   +   +M DA+                  K             I  +I 
Sbjct: 197 MYVEKVMTDVRHIEVQIMRDATGQTVYFPERDCSIQRNHQKMI----EMSPAVGITSEIR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + + +LA  A  A+        +FL D      +++E+N 
Sbjct: 253 ENLGQLAVKAANALNYVNTGTFEFLAD-RDNHFYFMEMNT 291


>gi|325133501|gb|EGC56164.1| carbamoyl-phosphate synthase, large subunit [Neisseria meningitidis
           M13399]
          Length = 1071

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/192 (14%), Positives = 73/192 (38%), Gaps = 8/192 (4%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYVIKPL 133
            +    +   +   + D+ R ++V++  G+   P+ + +           I  P V++P 
Sbjct: 652 GVNIIGTSADSIDAAEDRERFQKVLNDLGLRQPPNRIAHNEEEALVKAEEIGYPLVVRPS 711

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEI 192
                  + ++   +++   + ++   +    +L++ ++ + IE+    + D    V   
Sbjct: 712 YVLGGRAMQIVHSAEALQKYMREAVQVSEDSPVLLDFFLNNAIEVDVDCVSDGKDVVIGG 771

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            +   +       +S  +   + P  +  +I  E++R       A+G  G+    F    
Sbjct: 772 IMQHVEQAGI---HSGDSGCSLPPYSLSEEIQDEIRRQTKAMAYALGVVGLMNVQFAV-- 826

Query: 253 LSRKVFWLEINV 264
               VF LE+N 
Sbjct: 827 QDGVVFVLEVNP 838



 Score = 66.3 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 50/278 (17%), Positives = 101/278 (36%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +              DV        ++V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYKVILVNSNPATIMTDPEMADVTYIEPIMWQTVEKIIAKERPDAILP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      +L    +    +   A   + D+ R K+ +   G+    S +
Sbjct: 89  TMGGQTALNCALDLARNGVLAKYNVELIGATEDAIDKAEDRGRFKEAMEKIGLSCPKSFV 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     + +Q  +  P +I+P       G  +            +    +   +LLIEQ
Sbjct: 149 CHTMNEALAAQEQVGFPTLIRPSFTMGGSGGGIAYNKDEFLAICERGFDASPTHELLIEQ 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            V G  E    V+ D + +   I   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SVLGWKEYEMEVVRDKNDNCIIICSIEN----FDPMGVHTGDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RNASLAVLREIGVDTGGSNVQFAVNPENGEMIVIEMNP 302


>gi|320588452|gb|EFX00921.1| carbamoyl-phosphate large subunit [Grosmannia clavigera kw1407]
          Length = 1188

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 55/289 (19%), Positives = 104/289 (35%), Gaps = 37/289 (12%)

Query: 4   LMGGISSEREVSLSSGKACASALEDAGF--------------------KVSQIDVDRS-V 42
           L  G + E + S   G     AL++AG                     +V  + V    V
Sbjct: 111 LAIGQAGEFDYS---GSQALKALKEAGVASVLINPNIATIQTSHTLADEVYYLPVTPEYV 167

Query: 43  GLVLAHLKPDLAFNVLHG----NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQ 98
             V+   +PD  F    G    N G +   Q + E   +    + +    LS D+    +
Sbjct: 168 TYVIERERPDGIFLSFGGQTALNLGVEMQRQGLFEKYGVRVLGTSVRTLELSEDRDLFAR 227

Query: 99  VVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
            +    +P+  S  V      + +   +  P +++       LG      +  +  DL  
Sbjct: 228 ALDEINIPIAQSTAVGTVDEALAAAKTVGYPIIVRAAYALGGLGSGFANDEAELR-DLA- 285

Query: 157 SSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215
           + S     Q+L+E+ + G  E+   V+ DAS +   I V   + +   L   + +S  V 
Sbjct: 286 ARSLTLSPQILVEKSLKGWKEVEYEVVRDASNN--CITVCNMENFD-PLGIHTGDSIVVA 342

Query: 216 PAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
           P++ +  + Y  ++  A    + +G  G     +   P       +E+N
Sbjct: 343 PSQTLSDEEYHMLRTAAIKIVRHLGVVGECNVQYALQPDGLDYRVIEVN 391



 Score = 53.6 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 24/174 (13%), Positives = 60/174 (34%), Gaps = 8/174 (4%)

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--FTMDSQHLISPPYVI 130
           E        +       + D+ +  +++ S GV       +            +  P ++
Sbjct: 744 ETGGAKVLGTDPRDIDRAEDRQKFSEILDSIGVDQPAWKELTSVAEAAAFAEAVGYPVLV 803

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDV 189
           +P    S   + VI+    +   L  ++S +    ++I ++++G  E+    + +    +
Sbjct: 804 RPSYVLSGAAMTVIRSAADLQHKLEAAASVSPDHPVVISKFIEGAREIDVDAVANGGQVL 863

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
                   +    +    S ++T V  PA +       V+ +A     A+   G
Sbjct: 864 VHAVSEHVE----QAGVHSGDATLVLPPAALDDTTLARVREIADKVAHALRITG 913


>gi|299529566|ref|ZP_07043003.1| cyanophycin synthetase [Comamonas testosteroni S44]
 gi|298722429|gb|EFI63349.1| cyanophycin synthetase [Comamonas testosteroni S44]
          Length = 856

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 25/112 (22%), Positives = 51/112 (45%), Gaps = 5/112 (4%)

Query: 88  ALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIV-I 144
           +++ DK  +K+++ + GVPV     V            +  P V+KP  G    G++V I
Sbjct: 200 SIAQDKDLTKRLLHAAGVPVPMGRPVTDVEDAWAVAQEVGLPVVVKPQDGNQGKGVVVNI 259

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK 196
              + +      +S +  GD++L+E+++ G +    V+G   +       P+
Sbjct: 260 TTREGLEAAYKTASEF--GDEILVERFLPGHDFRMLVVGGQLVAAARREPPQ 309


>gi|239998178|ref|ZP_04718102.1| carbamoyl phosphate synthase large subunit [Neisseria gonorrhoeae
           35/02]
 gi|240015805|ref|ZP_04722345.1| carbamoyl phosphate synthase large subunit [Neisseria gonorrhoeae
           FA6140]
 gi|268594030|ref|ZP_06128197.1| carbamoyl phosphate synthase large subunit [Neisseria gonorrhoeae
           35/02]
 gi|268547419|gb|EEZ42837.1| carbamoyl phosphate synthase large subunit [Neisseria gonorrhoeae
           35/02]
          Length = 1071

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/192 (14%), Positives = 73/192 (38%), Gaps = 8/192 (4%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYVIKPL 133
            +    +   +   + D+ R ++V++  G+   P+ + +           I  P V++P 
Sbjct: 652 GVNIIGTSADSIDAAEDRERFQKVLNDLGLRQPPNRIAHNEEEALVKAEEIGYPLVVRPS 711

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEI 192
                  + ++   +++   + ++   +    +L++ ++ + IE+    + D    V   
Sbjct: 712 YVLGGRAMQIVHSAEALQKYMREAVQVSEDSPVLLDFFLNNAIEVDVDCVSDGKDVVIGG 771

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            +   +       +S  +   + P  +  +I  E++R       A+G  G+    F    
Sbjct: 772 IMQHVEQAGI---HSGDSGCSLPPYSLSEEIQDEIRRQTKAMAYALGVVGLMNVQFAV-- 826

Query: 253 LSRKVFWLEINV 264
               VF LE+N 
Sbjct: 827 QDGVVFVLEVNP 838



 Score = 67.5 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 50/278 (17%), Positives = 101/278 (36%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +              DV        ++V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYKVILVNSNPATIMTDPEMADVTYIEPIMWQTVEKIIAKERPDAILP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      +L    +    +   A   + D+ R K+ +   G+    S +
Sbjct: 89  TMGGQTALNCALDLARNGVLAKYNVELIGATEDAIDKAEDRGRFKEAMEKIGLSCPKSFV 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     + +Q  +  P +I+P       G  +            +    +   +LLIEQ
Sbjct: 149 CHTMNEALAAQEQVGFPTLIRPSFTMGGSGGGIAYNKDEFLAICERGFDASPTHELLIEQ 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            V G  E    V+ D + +   I   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SVLGWKEYEMEVVRDKADNCIIICSIEN----FDPMGVHTGDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RNASLAVLREIGVDTGGSNVQFAVNPENGEMIVIEMNP 302


>gi|119960857|ref|YP_948005.1| carbamoyl phosphate synthase large subunit [Arthrobacter aurescens
           TC1]
 gi|166989830|sp|A1R6Z3|CARB_ARTAT RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|119947716|gb|ABM06627.1| carbamoyl-phosphate synthase, large subunit [Arthrobacter aurescens
           TC1]
          Length = 1102

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 52/288 (18%), Positives = 110/288 (38%), Gaps = 36/288 (12%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI---------DVD------------RSVGLV 45
           G ++E + S   G      L++ G +V  +         D +              V  +
Sbjct: 21  GQAAEFDYS---GTQALRVLKEEGLRVILVNSNPATIMTDPEFADATYVEPITPEVVEKI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +A  +PD     L G    +  +      +LE   +    + I A  L  D+ + K VV 
Sbjct: 78  IAKERPDAILPTLGGQTALNTAIALDKNGVLEKYNVELIGANIAAIELGEDREKFKGVVE 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
            CG     S +++       +   +  P V++P      LG  +   +  +   + Q   
Sbjct: 138 RCGAESARSHIIHTMEEAFAAAEDLGYPMVVRPSFTMGGLGSGLAYNEDDLRRIVGQGLQ 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA- 217
           ++   ++L+E+ + G  E    +M D + +V  +   ++      +   + +S  V PA 
Sbjct: 198 YSPTTEVLLEESILGWKEYELEMMRDKNDNVVVVCSIENFD---PVGVHTGDSITVAPAL 254

Query: 218 KIPLDIYKEVQRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
            +    Y++++ ++    + +G   G     F  DP + +V  +E+N 
Sbjct: 255 TLTDREYQKLRDVSIAVIREVGVDTGGCNIQFAIDPATGRVVVIEMNP 302



 Score = 54.4 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/199 (14%), Positives = 74/199 (37%), Gaps = 14/199 (7%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--QHLISPPYV 129
           L    +P   +   A  L+  +    +V+   G+    +     F         I  P +
Sbjct: 652 LADAGVPILGTSPEAIDLAEHRGAFARVLDEAGLTSPKNGTAVSFEDAKKIADEIGYPVL 711

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDAS-- 186
           ++P       G+ ++  + ++   +  ++       +LI++++ D +E+    + D +  
Sbjct: 712 VRPSYVLGGRGMEIVYDEANLSRYIANATEITPDHPVLIDRFLEDAVEIDVDALFDGTDM 771

Query: 187 -LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
            L      + ++  +S        ++  + P  +  ++ + V+       + +G RG+  
Sbjct: 772 YLGGIMEHIEEAGIHS------GDSACVLPPITLGNNVIERVRTATRAIAEGVGVRGLIN 825

Query: 246 SDFLFDPLSRKVFWLEINV 264
             F     S  ++ LE N 
Sbjct: 826 IQFAL--ASDVLYVLEANP 842


>gi|110807116|ref|YP_690636.1| acetyl-CoA carboxylase biotin carboxylase subunit [Shigella
           flexneri 5 str. 8401]
 gi|110616664|gb|ABF05331.1| acetyl CoA carboxylase [Shigella flexneri 5 str. 8401]
          Length = 449

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 80/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         L  DK+ +   +   GVP  P    
Sbjct: 77  AIHPGYGFLSENASFAEQVERSGFIFIGPKAETIRLMGDKVSAIAAMKKAGVPCVPGSDG 136

Query: 112 -LVNRFTMDS--QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
            L +    +      I  P +IK   GG   G+ V++ D  +   +     ++ +    D
Sbjct: 137 PLGDDMDKNRAIAKRIGYPVIIKASGGGGGRGMRVVRGDAELAQSISMTRAEAKAAFSND 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+Y++    +   V+ D   +   +A           K          PA  I  +
Sbjct: 197 MVYMEKYLENPRHVEIQVLADGQGNAIYLAERDCSMQRRHQK-----VVEEAPAPGITPE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + + +      A   IG RG    +FLF   + + +++E+N 
Sbjct: 252 LRRYIGERCAKACVDIGYRGAGTFEFLF--ENGEFYFIEMNT 291


>gi|325129512|gb|EGC52339.1| carbamoyl-phosphate synthase, large subunit [Neisseria meningitidis
           OX99.30304]
 gi|325135635|gb|EGC58252.1| carbamoyl-phosphate synthase, large subunit [Neisseria meningitidis
           M0579]
 gi|325201504|gb|ADY96958.1| carbamoyl-phosphate synthase, large subunit [Neisseria meningitidis
           M01-240149]
 gi|325207484|gb|ADZ02936.1| carbamoyl-phosphate synthase, large subunit [Neisseria meningitidis
           NZ-05/33]
          Length = 1071

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/192 (14%), Positives = 73/192 (38%), Gaps = 8/192 (4%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYVIKPL 133
            +    +   +   + D+ R ++V++  G+   P+ + +           I  P V++P 
Sbjct: 652 GVNIIGTSADSIDAAEDRERFQKVLNDLGLRQPPNRIAHNEEEALVKAEEIGYPLVVRPS 711

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEI 192
                  + ++   +++   + ++   +    +L++ ++ + IE+    + D    V   
Sbjct: 712 YVLGGRAMQIVHSAEALQKYMREAVQVSEDSPVLLDFFLNNAIEVDVDCVSDGKDVVIGG 771

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            +   +       +S  +   + P  +  +I  E++R       A+G  G+    F    
Sbjct: 772 IMQHVEQAGI---HSGDSGCSLPPYSLSEEIQDEIRRQTKAMAYALGVVGLMNVQFAV-- 826

Query: 253 LSRKVFWLEINV 264
               VF LE+N 
Sbjct: 827 QDGVVFVLEVNP 838



 Score = 66.3 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 50/278 (17%), Positives = 101/278 (36%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +              DV        ++V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYKVILVNSNPATIMTDPEMADVTYIEPIMWQTVEKIIAKERPDAILP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      +L    +    +   A   + D+ R K+ +   G+    S +
Sbjct: 89  TMGGQTALNCALDLARNGVLAKYNVELIGATEDAIDKAEDRGRFKEAMEKIGLSCPKSFV 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     + +Q  +  P +I+P       G  +            +    +   +LLIEQ
Sbjct: 149 CHTMNEALAAQEQVGFPTLIRPSFTMGGSGGGIAYNKDEFLAICERGFDASPTHELLIEQ 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            V G  E    V+ D + +   I   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SVLGWKEYEMEVVRDKNDNCIIICSIEN----FDPMGVHTGDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RNASLAVLREIGVDTGGSNVQFAVNPENGEMIVIEMNP 302


>gi|270291211|ref|ZP_06197434.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Pediococcus
           acidilactici 7_4]
 gi|270280607|gb|EFA26442.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Pediococcus
           acidilactici 7_4]
          Length = 431

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 37/219 (16%), Positives = 75/219 (34%), Gaps = 19/219 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   ED L   ++    + +            DK RS+++    GV   P    
Sbjct: 77  AIHPGYGFLSEDPLFATMVAECGLTWIGPSPDQIQRYADKERSRELAQKRGVLTIPGSGL 136

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS-----SSWNHGDQ 165
           I  +R    +   +  P ++K   GG   GI V   +Q +   +        +S+     
Sbjct: 137 ITDDRQIKPAAEKLGFPVLLKASFGGGGKGIRVAHDEQELAQIIAVVRQESGASFGSSPL 196

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
            L     +   +   V+G       +I +      S +L           PA + ++  +
Sbjct: 197 YLERDLQNARHIEVQVLGLNE----QIIILGDRNCSIQL--HRQKVVEESPANLTIEQRE 250

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +         G   +   +FL   +  + ++LE+N 
Sbjct: 251 RLYQAVHRLLDQSGYESLGTVEFL--QVGEEFYFLEMNT 287


>gi|240122735|ref|ZP_04735691.1| carbamoyl phosphate synthase large subunit [Neisseria gonorrhoeae
           PID332]
 gi|268681334|ref|ZP_06148196.1| carbamoyl-phosphate synthase subunit large [Neisseria gonorrhoeae
           PID332]
 gi|268621618|gb|EEZ54018.1| carbamoyl-phosphate synthase subunit large [Neisseria gonorrhoeae
           PID332]
          Length = 1071

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/192 (14%), Positives = 73/192 (38%), Gaps = 8/192 (4%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYVIKPL 133
            +    +   +   + D+ R ++V++  G+   P+ + +           I  P V++P 
Sbjct: 652 GVNIIGTSADSIDAAEDRERFQKVLNDLGLRQPPNRIAHNEEEALVKAEEIGYPLVVRPS 711

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEI 192
                  + ++   +++   + ++   +    +L++ ++ + IE+    + D    V   
Sbjct: 712 YVLGGRAMQIVHSAEALQKYMREAVQVSEDSPVLLDFFLNNAIEVDVDCVSDGKDVVIGG 771

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            +   +       +S  +   + P  +  +I  E++R       A+G  G+    F    
Sbjct: 772 IMQHVEQAGI---HSGDSGCSLPPYSLSEEIQDEIRRQTKAMAYALGVVGLMNVQFAV-- 826

Query: 253 LSRKVFWLEINV 264
               VF LE+N 
Sbjct: 827 QDGVVFVLEVNP 838



 Score = 67.5 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 50/278 (17%), Positives = 101/278 (36%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +              DV        ++V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYKVILVNSNPATIMTDPEMADVTYIEPIMWQTVEKIIAKERPDAILP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      +L    +    +   A   + D+ R K+ +   G+    S +
Sbjct: 89  TMGGQTALNCALDLARNGVLAKYNVELIGATEDAIDKAEDRGRFKEAMEKIGLSCPKSFV 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     + +Q  +  P +I+P       G  +            +    +   +LLIEQ
Sbjct: 149 CHTMNEALAAQEQVGFPTLIRPSFTMGGSGGGIAYNKDEFLAICERGFDASPTHELLIEQ 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            V G  E    V+ D + +   I   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SVLGWKEYEMEVVRDKADNCIIICSIEN----FDPMGVHTGDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RNASLAVLREIGVDTGGSNVQFAVNPENGEMIVIEMNP 302


>gi|240114896|ref|ZP_04728958.1| carbamoyl phosphate synthase large subunit [Neisseria gonorrhoeae
           PID18]
 gi|260441288|ref|ZP_05795104.1| carbamoyl phosphate synthase large subunit [Neisseria gonorrhoeae
           DGI2]
 gi|268600552|ref|ZP_06134719.1| carbamoyl-phosphate synthase subunit large [Neisseria gonorrhoeae
           PID18]
 gi|291044644|ref|ZP_06570353.1| carbamoyl phosphate synthase large subunit [Neisseria gonorrhoeae
           DGI2]
 gi|268584683|gb|EEZ49359.1| carbamoyl-phosphate synthase subunit large [Neisseria gonorrhoeae
           PID18]
 gi|291011538|gb|EFE03534.1| carbamoyl phosphate synthase large subunit [Neisseria gonorrhoeae
           DGI2]
          Length = 1071

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/192 (14%), Positives = 73/192 (38%), Gaps = 8/192 (4%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYVIKPL 133
            +    +   +   + D+ R ++V++  G+   P+ + +           I  P V++P 
Sbjct: 652 GVNIIGTSADSIDAAEDRERFQKVLNDLGLRQPPNRIAHNEEEALVKAEEIGYPLVVRPS 711

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEI 192
                  + ++   +++   + ++   +    +L++ ++ + IE+    + D    V   
Sbjct: 712 YVLGGRAMQIVHSAEALQKYMREAVQVSEDSPVLLDFFLNNAIEVDVDCVSDGKDVVIGG 771

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            +   +       +S  +   + P  +  +I  E++R       A+G  G+    F    
Sbjct: 772 IMQHVEQAGI---HSGDSGCSLPPYSLSEEIQDEIRRQTKAMAYALGVVGLMNVQFAV-- 826

Query: 253 LSRKVFWLEINV 264
               VF LE+N 
Sbjct: 827 QDGVVFVLEVNP 838



 Score = 67.5 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 50/278 (17%), Positives = 101/278 (36%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +              DV        ++V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYKVILVNSNPATIMTDPEMADVTYIEPIMWQTVEKIIAKERPDAILP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      +L    +    +   A   + D+ R K+ +   G+    S +
Sbjct: 89  TMGGQTALNCALDLARNGVLAKYNVELIGATEDAIDKAEDRGRFKEAMEKIGLSCPKSFV 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     + +Q  +  P +I+P       G  +            +    +   +LLIEQ
Sbjct: 149 CHTMNEALAAQEQVGFPTLIRPSFTMGGSGGGIAYNKDEFLAICERGFDASPTHELLIEQ 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            V G  E    V+ D + +   I   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SVLGWKEYEMEVVRDKADNCIIICSIEN----FDPMGVHTGDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RNASLAVLREIGVDTGGSNVQFAVNPENGEMIVIEMNP 302


>gi|254443785|ref|ZP_05057261.1| RimK-like ATP-grasp domain family [Verrucomicrobiae bacterium
           DG1235]
 gi|198258093|gb|EDY82401.1| RimK-like ATP-grasp domain family [Verrucomicrobiae bacterium
           DG1235]
          Length = 494

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/186 (16%), Positives = 62/186 (33%), Gaps = 7/186 (3%)

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-DSQHLISPPYVIKPLKGGSSLGI 141
              +     +K+   +++ +  +P   S L+ R  + +     S P ++K   G  S+G+
Sbjct: 281 DPESIRRCCNKVYLAELLRTHNIPTPNSTLITRRNLTELAPGFSFPLIVKIPDGSFSIGV 340

Query: 142 IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFY 200
             +K  + +   +L          L+ +++V    +   G++    L      + K  + 
Sbjct: 341 HKVKSKEELI--ILSKDLLQTSSILIAQEFVPTEFDWRIGIIDGKPLYACRYYMSKGHWQ 398

Query: 201 SYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260
            Y       +ST          +   V   A  A   IG       D            +
Sbjct: 399 IYNHAVKGADSTGDSAGVPINQVPAVVLDTALKASTLIGTGFYG-VD--IKQSGATALVI 455

Query: 261 EINVQP 266
           E+N  P
Sbjct: 456 EVNDNP 461


>gi|194097648|ref|YP_002000686.1| carbamoyl phosphate synthase large subunit [Neisseria gonorrhoeae
           NCCP11945]
 gi|193932938|gb|ACF28762.1| carbamoyl phosphate synthase large subunit [Neisseria gonorrhoeae
           NCCP11945]
          Length = 808

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/192 (14%), Positives = 73/192 (38%), Gaps = 8/192 (4%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYVIKPL 133
            +    +   +   + D+ R ++V++  G+   P+ + +           I  P V++P 
Sbjct: 389 GVNIIGTSADSIDAAEDRERFQKVLNDLGLRQPPNRIAHNEEEALVKAEEIGYPLVVRPS 448

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEI 192
                  + ++   +++   + ++   +    +L++ ++ + IE+    + D    V   
Sbjct: 449 YVLGGRAMQIVHSAEALQKYMREAVQVSEDSPVLLDFFLNNAIEVDVDCVSDGKDVVIGG 508

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            +   +       +S  +   + P  +  +I  E++R       A+G  G+    F    
Sbjct: 509 IMQHVEQAGI---HSGDSGCSLPPYSLSEEIQDEIRRQTKAMAYALGVVGLMNVQFAV-- 563

Query: 253 LSRKVFWLEINV 264
               VF LE+N 
Sbjct: 564 QDGVVFVLEVNP 575


>gi|167572027|ref|ZP_02364901.1| acetyl-CoA carboxylase biotin carboxylase subunit [Burkholderia
           oklahomensis C6786]
          Length = 481

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 74/220 (33%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+    A +E   + +        A   DK R+++      VP  P    
Sbjct: 92  AIHPGYGFLSENAGFAAQVEAAGLIFVGPSAHVIATMGDKARARETARRANVPTVPGSDG 151

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK----DQSIPLDLLQSSSWNHGDQ 165
            +            I  P +IK   GG   GI V       D  +PL   ++ +      
Sbjct: 152 VVTSLDEARAVAERIGYPVMIKAAAGGGGRGIRVAHDAAQLDAELPLAQREAQAAFGDGG 211

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+++     +   V+GD + +   +   +        K             +   + 
Sbjct: 212 VYLERFIAHARHIEVQVLGDGT-NAVHLFERECSLQRRRQKIL----EEAPSPSLTPALR 266

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +   A    + +G R     ++LFD    +  ++E+N 
Sbjct: 267 DALCASATRLARQVGYRSAGTLEYLFDEARGEFHFIEMNT 306


>gi|197120688|ref|YP_002132639.1| carbamoyl-phosphate synthase L chain ATP-binding [Anaeromyxobacter
           sp. K]
 gi|196170537|gb|ACG71510.1| Carbamoyl-phosphate synthase L chain ATP-binding [Anaeromyxobacter
           sp. K]
          Length = 510

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 78/220 (35%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+  +   L+   I        A      K  +++ +++ GVPV P    
Sbjct: 82  AVHPGYGFLSENAELARALDRAGIALVGPPAAAMDAMGVKTTARRNMAAAGVPVVPGSEE 141

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL----DLLQSSSWNHGDQ 165
                         I  P +IK   GG   G+    + +           ++++    D+
Sbjct: 142 PFAEEAEARAFAERIGFPVMIKAAAGGGGKGMKKCDRAEDFAALWQSARREATAAFGDDR 201

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           L +E++++    +   +  D   +   +   +      + K           A +   + 
Sbjct: 202 LYLEKFLEKPRHVEIQIFADQHGNCVWLGERECSVQRRQQK----VIEETPSAVLDDRLR 257

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +  +A  A +A+G  G    + L D   R  ++LE+N 
Sbjct: 258 EAMGEVAVRAARAVGYVGAGTVELLVDAH-RNFYFLEMNT 296


>gi|119713329|gb|ABL97393.1| acetyl-CoA carboxylase [uncultured marine bacterium EB80_02D08]
          Length = 449

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 34/217 (15%), Positives = 78/217 (35%), Gaps = 18/217 (8%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVN 114
           +G   ED     + E     +            DK+ +K +  + G+ + P     I  N
Sbjct: 82  YGFLAEDHNFAEMCEKSGFKFIGPTSDTIQKMGDKITAKTLAENSGIQIVPGYKDEIPSN 141

Query: 115 RFTMDS-QHLISPPYVIKPLKGGSSLGIIVIKKDQSI--PLDLLQSSSWN--HGDQLLIE 169
           +         I  P +IK   GG   G+ V++K++ +    ++ +  + N    + + +E
Sbjct: 142 QDEFKRIARNIGYPIMIKATAGGGGRGMRVVEKEEDLIGHAEITKQEAKNGFGNETIYLE 201

Query: 170 QYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEV 227
           +++ +   +   ++GD       +            K          PA  I      + 
Sbjct: 202 KFIGNPRHIEVQIVGDGKGKAIHLGTRDCSMQRRHQK-----IIEEAPALNINKMSLDKT 256

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +      + I   G+   +FL++    + +++E+N 
Sbjct: 257 LKACITLCEEIQYEGVGTIEFLYEK--DQFYFIEMNT 291


>gi|116328676|ref|YP_798396.1| dehydrogenase [Leptospira borgpetersenii serovar Hardjo-bovis L550]
 gi|116330667|ref|YP_800385.1| dehydrogenase [Leptospira borgpetersenii serovar Hardjo-bovis
           JB197]
 gi|116121420|gb|ABJ79463.1| Dehydrogenase [Leptospira borgpetersenii serovar Hardjo-bovis L550]
 gi|116124356|gb|ABJ75627.1| Dehydrogenase [Leptospira borgpetersenii serovar Hardjo-bovis
           JB197]
          Length = 760

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 35/190 (18%), Positives = 83/190 (43%), Gaps = 14/190 (7%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF--TMDSQHLISPPYV 129
           L+L  I Y  +       + +K++ ++ +   G+ +     V  F    ++   +  P V
Sbjct: 98  LDLPGIRYVDAEA-----ASNKVKMRERLKRAGISLPGFAPVWSFSDAREALEFLKFPLV 152

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG-DASLD 188
           +KP     + G+I ++  + +      +  ++   ++++E+Y+ G E++   +  + +  
Sbjct: 153 MKPADNMGARGVIKVENREELQAAFKHAKKYSPTGEMILEEYMPGPEVSVDALTWNGNFV 212

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR-GISRSD 247
           +T IA         E +   +   H +P+ +   + KEV+ + F + +A+G   G  + D
Sbjct: 213 ITGIA-----DRIIEREPFFIEMGHNMPSALSSSVLKEVEDVMFRSMKALGITIGAGKGD 267

Query: 248 FLFDPLSRKV 257
               P   KV
Sbjct: 268 IKVTPDGVKV 277


>gi|12039052|gb|AAF18638.2|AC006228_9 F5J5.19 [Arabidopsis thaliana]
          Length = 2257

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 37/241 (15%), Positives = 79/241 (32%), Gaps = 31/241 (12%)

Query: 50  KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109
           + D  +    G+  E+  +   L+   I +      + A   DK+ S  +  +  VP  P
Sbjct: 120 RVDAVWPG-WGHASENPELPDALDAKGIIFLGPPASSMAALGDKIGSSLIAQAADVPTLP 178

Query: 110 S-------------------------ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
                                     +      + S  ++  P +IK   GG   GI  +
Sbjct: 179 WSGSHVKIPPNSNLVTIPEEIYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKV 238

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYE 203
             D  +     Q      G  + I +       L   ++ D   +V+ +           
Sbjct: 239 HNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDKHGNVSALHSRDCSVQRRH 298

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            K        V P     +  K++++ A    +++   G +  ++L+   + + ++LE+N
Sbjct: 299 QKIIEEGPITVAP----PETVKKLEQAARRLAKSVNYVGAATVEYLYSMDTGEYYFLELN 354

Query: 264 V 264
            
Sbjct: 355 P 355


>gi|332279913|ref|ZP_08392326.1| biotin carboxylase [Shigella sp. D9]
 gi|332102265|gb|EGJ05611.1| biotin carboxylase [Shigella sp. D9]
          Length = 462

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 81/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         L  DK+ +   +   GVP  P    
Sbjct: 90  AIHPGYGFLSENANFAEQVERSGFIFIGPKADTIRLMGDKVSAIAAMKKAGVPCVPGSDG 149

Query: 112 -LVNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
            L +    +      I  P +IK   GG   G+ V++ D  +   +     ++ +  + D
Sbjct: 150 PLGDDMDKNRAIAKRIGYPVIIKASGGGGGRGMRVVRGDAELAQSISMTRAEAKAAFNND 209

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+Y++    +   V+ D   +   +A           K          PA  I  +
Sbjct: 210 MVYMEKYLENPRHVEIQVLADGQGNAIYLAERDCSMQRRHQK-----VVEEAPAPGITPE 264

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + + +      A   IG RG    +FLF   + + +++E+N 
Sbjct: 265 LRRYIGERCAKACVDIGYRGAGTFEFLF--ENGEFYFIEMNT 304


>gi|77359233|ref|YP_338808.1| acetyl-CoA carboxylase biotin carboxylase subunit
           [Pseudoalteromonas haloplanktis TAC125]
 gi|76874144|emb|CAI85365.1| biotin carboxylase (A subunit of acetyl-CoA carboxylase)(ACC)
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 446

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 78/222 (35%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+      +E     +         L  DK+ +   +   GVP  P    
Sbjct: 77  AIHPGYGFLAENADFADQVEQSGFVFIGPTGDTIRLMGDKVSAIAAMRKAGVPCVPGSDG 136

Query: 111 -ILVNRF-TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGD 164
            +  ++   M     I  P +IK   GG   G+ V++ +  +   +     ++  +    
Sbjct: 137 PVSDDKERNMQIAKRIGYPVIIKAAGGGGGRGMRVVRSEAELIDSIALTQQEAKQFFGNG 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+Y++    +   ++ D   +   +            K          PA  I  +
Sbjct: 197 MVYMEKYLENPRHIEVQILADGQGNAVHLGERDCSMQRRHQK-----VVEEAPAPGITAE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             K +      A   IG RG    +FL+   + + +++E+N 
Sbjct: 252 TRKFIGERCTRACIEIGYRGAGTFEFLY--ENGEFYFIEMNT 291


>gi|79358114|ref|NP_174849.2| ACC1 (ACETYL-COENZYME A CARBOXYLASE 1); acetyl-CoA carboxylase
           [Arabidopsis thaliana]
 gi|1100253|dbj|BAA07012.1| acetyl-CoA carboxylase [Arabidopsis thaliana]
 gi|332193728|gb|AEE31849.1| acetyl-CoA carboxylase 1 [Arabidopsis thaliana]
 gi|332193729|gb|AEE31850.1| acetyl-CoA carboxylase 1 [Arabidopsis thaliana]
          Length = 2254

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 37/241 (15%), Positives = 79/241 (32%), Gaps = 31/241 (12%)

Query: 50  KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109
           + D  +    G+  E+  +   L+   I +      + A   DK+ S  +  +  VP  P
Sbjct: 120 RVDAVWPG-WGHASENPELPDALDAKGIIFLGPPASSMAALGDKIGSSLIAQAADVPTLP 178

Query: 110 S-------------------------ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
                                     +      + S  ++  P +IK   GG   GI  +
Sbjct: 179 WSGSHVKIPPNSNLVTIPEEIYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKV 238

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYE 203
             D  +     Q      G  + I +       L   ++ D   +V+ +           
Sbjct: 239 HNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDKHGNVSALHSRDCSVQRRH 298

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            K        V P     +  K++++ A    +++   G +  ++L+   + + ++LE+N
Sbjct: 299 QKIIEEGPITVAP----PETVKKLEQAARRLAKSVNYVGAATVEYLYSMDTGEYYFLELN 354

Query: 264 V 264
            
Sbjct: 355 P 355


>gi|295835201|ref|ZP_06822134.1| acetyl/propionyl-CoA carboxylase, alpha subunit [Streptomyces sp.
           SPB74]
 gi|295825365|gb|EFG64209.1| acetyl/propionyl-CoA carboxylase, alpha subunit [Streptomyces sp.
           SPB74]
          Length = 581

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 38/212 (17%), Positives = 76/212 (35%), Gaps = 18/212 (8%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
           +G   E+      +    + +      A      K R+K +++  GVP     L+     
Sbjct: 5   YGFLSENAAFARAVTGAGLTWIGPPPEAIEAMASKTRAKDLMARAGVP-----LLAAVDP 59

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQLLIEQYV-D 173
                   P ++K   GG   G+ +++    +P  L  + + +      D++  E Y+  
Sbjct: 60  ARATERDLPLLLKAASGGGGRGMRLVRALAELPAALTAARAESRAAFGDDEVFAEPYLAR 119

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAF 232
           G  +   ++ D    V  +           L+          PA  +P  + + + R A 
Sbjct: 120 GRHVEVQILADLHGTVWVLGT-----RDCSLQRRHQKVIEEAPAPHLPPALRESLHRAAG 174

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            A +A+   G    +FL D    +  +LE+N 
Sbjct: 175 AAARAVAYTGAGTVEFLVD--GDRAHFLEMNT 204


>gi|288959979|ref|YP_003450319.1| biotin carboxylase [Azospirillum sp. B510]
 gi|288912287|dbj|BAI73775.1| biotin carboxylase [Azospirillum sp. B510]
          Length = 459

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 37/232 (15%), Positives = 78/232 (33%), Gaps = 15/232 (6%)

Query: 42  VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +         D      +G   E+     ++E   + +            DK  +++   
Sbjct: 67  LVAAARKTGCDAVHPG-YGFLAENAEFADMVESFGMVFVGPKADTIRRMGDKAAAREAAI 125

Query: 102 SCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLD 153
           + GVPV P     +      + +   I  P +IK   GG   GI + +    +    P  
Sbjct: 126 AAGVPVVPGSKGRVADVDAALAAAETIGYPVMIKAAAGGGGRGIRIAETPDDLRRLAPQA 185

Query: 154 LLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212
             ++ +      L +E+ ++    +   ++GD S         +        K       
Sbjct: 186 QSEAQAAFRDGGLYLERVIENARHIEVQILGDGS-RAIHCFERECSLQRRRQK----VWE 240

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
               A +     + +   A    +++G RG    ++L+D  S   F++E+N 
Sbjct: 241 EAPAACLDEATRQRLCASAVALTESVGYRGAGTLEYLYDEPSGAFFFIEMNT 292


>gi|154279148|ref|XP_001540387.1| hypothetical protein HCAG_04227 [Ajellomyces capsulatus NAm1]
 gi|150412330|gb|EDN07717.1| hypothetical protein HCAG_04227 [Ajellomyces capsulatus NAm1]
          Length = 1287

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 42/222 (18%), Positives = 91/222 (40%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
           ++H  +G   E+      +E   + +            DK+ ++++   CGVPV P    
Sbjct: 228 LIHPGYGFLSENAEFARNVEKAGLVFVGPTPDTIDALGDKVSARRLAIKCGVPVVPGTPG 287

Query: 113 -VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS-----SSWNHGD 164
            V RF            P +IK   GG   G+ V+++ +++     ++     S++    
Sbjct: 288 PVERFEEVKAFTDQYGFPIIIKAAFGGGGRGMRVVREQETLQDAFERATSEANSAFG-NG 346

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLD 222
            + +E+++D    +   ++GD   D+  +           ++        V PA  +P+D
Sbjct: 347 TVFVERFLDKPKHIEVQLLGDNHGDIVHLYE-----RDCSVQRRHQKVVEVAPAKDLPVD 401

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +   +   A    +++  R    ++FL D  +R  +++EIN 
Sbjct: 402 VRDSILADAVKLAKSVNYRNAGTAEFLVDQQNR-YYFIEINP 442


>gi|219850438|ref|YP_002464871.1| lysine biosynthesis enzyme LysX [Chloroflexus aggregans DSM 9485]
 gi|219544697|gb|ACL26435.1| lysine biosynthesis enzyme LysX [Chloroflexus aggregans DSM 9485]
          Length = 283

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 50/279 (17%), Positives = 91/279 (32%), Gaps = 47/279 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL--KPDLAFNVL 58
           +AVL   I +E        K     LE  G    +ID DR     L       D+     
Sbjct: 3   IAVLCSRIRAEE-------KLLFQELERRGLDYVKID-DREQIFDLHQTSYPFDVVL--- 51

Query: 59  HGNFGEDGLVQ--------AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
                 +  +Q         IL    +P  ++    +    DK  + Q +   GVP    
Sbjct: 52  ------ERAIQHSRALYMLKILNDAGVPTVNT-YHVALTCGDKFLTTQALIHAGVPTPRC 104

Query: 111 ILV--NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ--L 166
           +L       +++   +  P V+KP+ G     +  I    +    L       +      
Sbjct: 105 LLAFTPESALEAIEQLGYPVVLKPVIGSWGRMVSKINDRDAAEAILEHRDVLGNYQHSIF 164

Query: 167 LIEQYV--DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
            I+QY+   G ++   V+GD  +       P      +    +        P      + 
Sbjct: 165 YIQQYINKPGRDIRSFVIGDECIAAIYRTSPH-----WITNTARGGVATNCP------VT 213

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            E+  L+  A  A+G   ++  D + +    ++   E+N
Sbjct: 214 PELADLSVRAAHAVGGGVVA-ID-ILETPEGELLVNEVN 250


>gi|221069122|ref|ZP_03545227.1| cyanophycin synthetase [Comamonas testosteroni KF-1]
 gi|220714145|gb|EED69513.1| cyanophycin synthetase [Comamonas testosteroni KF-1]
          Length = 856

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 25/112 (22%), Positives = 51/112 (45%), Gaps = 5/112 (4%)

Query: 88  ALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIV-I 144
           +++ DK  +K+++ + GVPV     V            +  P V+KP  G    G++V I
Sbjct: 200 SIAQDKDLTKRLLHAAGVPVPMGRPVTDVEDAWAVAQEVGLPVVVKPQDGNQGKGVVVNI 259

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK 196
              + +      +S +  GD++L+E+++ G +    V+G   +       P+
Sbjct: 260 TTREGLEAAYKTASEF--GDEILVERFLPGHDFRMLVVGGQLVAAARREPPQ 309


>gi|77918658|ref|YP_356473.1| phosphoribosylglycinamide formyltransferase 2 [Pelobacter
           carbinolicus DSM 2380]
 gi|123770495|sp|Q3A5Q4|PURT_PELCD RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|77544741|gb|ABA88303.1| formate-dependent phosphoribosylglycinamide formyltransferase
           [Pelobacter carbinolicus DSM 2380]
          Length = 393

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/192 (15%), Positives = 65/192 (33%), Gaps = 20/192 (10%)

Query: 97  KQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD- 153
           +       +P       + +     +   I  P VIKP+   S  G   +K    I    
Sbjct: 117 RLAAEDLNLPTAAYRFASSYEEFCQAVEEIGLPCVIKPIMSSSGKGQSTVKTPDDIEKAW 176

Query: 154 -LLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP---KSDFYSYELKYSSL 209
              +  +   G++++IE ++   +    ++    +D T    P   + +   Y+  +   
Sbjct: 177 NYARQGARGAGERVIIEAFIP-FDYEITLLTVRHVDGTSYCPPIGHRQEGGDYQESW--- 232

Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
                 P  +      E QR A +  +A+G  G+   +F        V++ E++ +P   
Sbjct: 233 -----QPMPMTDKALAEAQRQAKVITEALGGAGLFGVEFFI--QGDTVYFSEVSPRP--H 283

Query: 270 PVSIFPEMAAYA 281
              +        
Sbjct: 284 DTGMVTMATQNM 295


>gi|310795845|gb|EFQ31306.1| pyruvate carboxylase [Glomerella graminicola M1.001]
          Length = 1191

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 35/222 (15%), Positives = 88/222 (39%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
           ++H  +G   E+      +E   + +            DK+ ++++  + GVPV P    
Sbjct: 117 MIHPGYGFLSENAEFARNVEKAGLIFVGPSAEVIDSLGDKVSARKLAIAAGVPVVPGTEG 176

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS-----SSWNHGD 164
            +               P +IK   GG   G+ V+++ +++     ++     S++    
Sbjct: 177 AVGTFEEVKGFTDKYGFPIIIKAAYGGGGRGMRVVREQEALKEAFERATSEAKSAFG-NG 235

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLD 222
            + +E+++D    +   ++GD   ++  +           ++        + PA  +P +
Sbjct: 236 TVFVERFLDKPKHIEVQLLGDNHGNIVHLYE-----RDCSVQRRHQKVVEIAPAKDLPSE 290

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +   +   A    +++  R    ++FL D  +R  +++EIN 
Sbjct: 291 VRDAILNDAVKLAKSVNYRNAGTAEFLVDQQNR-YYFIEINP 331


>gi|302916621|ref|XP_003052121.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256733060|gb|EEU46408.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 1164

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 88/221 (39%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
           ++H  +G   E+      +E   + +            DK+ ++++ ++  VPV P    
Sbjct: 90  MIHPGYGFLSENAEFARNVEKAGLIFVGPSPDVIDALGDKVSARKLANAANVPVVPGTKG 149

Query: 112 LVNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGDQ 165
            V R+    +       P +IK   GG   G+ V+++ +S+         ++ +      
Sbjct: 150 AVERYEEVKEFTDKYGFPIIIKAAFGGGGRGMRVVREQESLKESFERATSEAKTAFGNGT 209

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDI 223
           + +E+++D    +   ++GD   ++  +           ++        + PA  +P D+
Sbjct: 210 VFVERFLDKPKHIEVQLLGDNHGNIVHLYE-----RDCSVQRRHQKVVEIAPAKDLPADV 264

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              +   A    +  G R    ++FL D  +R  +++EIN 
Sbjct: 265 RDNILNDAVRLAKTAGYRNAGTAEFLVDQQNR-YYFIEINP 304


>gi|94970314|ref|YP_592362.1| acetyl-CoA carboxylase, biotin carboxylase [Candidatus Koribacter
           versatilis Ellin345]
 gi|94552364|gb|ABF42288.1| acetyl-CoA carboxylase, biotin carboxylase [Candidatus Koribacter
           versatilis Ellin345]
          Length = 451

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 84/220 (38%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     + +   I +         L  +K +++  +   GVP+ P    
Sbjct: 77  AIHPGYGLLSENANFAEVCQACGIEFIGPKPETIRLMGEKEKARAAMKEHGVPILPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
            +      M+    I  P ++K   GG   G+ VI+ ++ +P+    +SS          
Sbjct: 137 VVATEAEAMEWAKKIGFPVIVKAKAGGGGRGMRVIRSEEELPVHFAAASSEAASAFGNGD 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           L +E++V+    +   ++ D+  +V  +   +        K            ++  ++ 
Sbjct: 197 LYMEKFVERPRHIEFQILADSYGNVVSLGERECSIQRRHQKLL----EEAPSTQVTPELR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            E+  +       IG       +FL D   RK++++E+N 
Sbjct: 253 AEIGGILEKTLSKIGYINAGTIEFLMDE-DRKLYFIEMNT 291


>gi|255008411|ref|ZP_05280537.1| putative biotin carboxylase 1 [Bacteroides fragilis 3_1_12]
 gi|313146134|ref|ZP_07808327.1| biotin carboxylase [Bacteroides fragilis 3_1_12]
 gi|313134901|gb|EFR52261.1| biotin carboxylase [Bacteroides fragilis 3_1_12]
          Length = 503

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 80/220 (36%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+       E   + +        A    K  +++++   G+P+ P    
Sbjct: 76  AIHPGYGFLSENADFARRCEEEGVIFIGPSADIIARMGIKTEARRIMREAGLPIVPGTED 135

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN----HGDQ 165
            +            +  P ++K L GG   G+ +++ ++ +   L  S S        D 
Sbjct: 136 PVKGIAEAKKVAAEVGYPIMLKALAGGGGKGMRLVRSEEEMETALRLSQSEAGTSFGNDA 195

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+Y++    +   ++GD   +V  +   +        K             +  +  
Sbjct: 196 VYIEKYIENPHHIEVQILGDKYGNVIHLYERECSIQRRNQK----VIEESPSPFVKPETR 251

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            ++ ++A  A + I        +F+ D   +  ++LE+N 
Sbjct: 252 AKMLKVAVEACKRINYYSAGTLEFMMDK-DQNFYFLEMNT 290


>gi|239917882|ref|YP_002957440.1| pyruvate carboxylase [Micrococcus luteus NCTC 2665]
 gi|281413621|ref|ZP_06245363.1| pyruvate carboxylase [Micrococcus luteus NCTC 2665]
 gi|239839089|gb|ACS30886.1| pyruvate carboxylase [Micrococcus luteus NCTC 2665]
          Length = 1172

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 40/251 (15%), Positives = 88/251 (35%), Gaps = 22/251 (8%)

Query: 28  DAGFKVS-QIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           + G  V   +DVD  +  V      D  +   +G   E+  +        I +       
Sbjct: 75  EEGHPVRAYLDVDE-IIRVAKDAGADAIYPG-YGFLSENAGLARAAAENGITFVGPPADV 132

Query: 87  SALSMDKMRSKQVVSSCGVPVC----PSILVNRFTMDSQHLISPPYVIKPLKGGSSLGII 142
             L+ +K+ + +     G+P      PS  V  + ++    I  P  +K + GG   G+ 
Sbjct: 133 LELTGNKVEALRAAKRAGIPTLASSDPSADV-EWLLEQAEEIGFPIFVKAVAGGGGRGMR 191

Query: 143 VIKKDQS----IPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKS 197
            +++ +     +   + ++ +      + +EQ V     +   ++ D   +V        
Sbjct: 192 RVERREDLRGSLEAAMREADTAFGDPTVFLEQAVLRPRHIEVQILADGEGNVV-----HL 246

Query: 198 DFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS-- 254
                 L+        + PA  +  +I + + R A    + +G       +FL D     
Sbjct: 247 FERDCSLQRRHQKVIEMAPAPNLDEEIRQALHRDAVAFAKEMGYVNAGTVEFLVDTAGER 306

Query: 255 -RKVFWLEINV 264
             +  ++E+N 
Sbjct: 307 AGQHVFIEMNP 317


>gi|188532434|ref|YP_001906231.1| acetyl-CoA carboxylase biotin carboxylase subunit [Erwinia
           tasmaniensis Et1/99]
 gi|188027476|emb|CAO95323.1| Acetyl CoA carboxylase, biotin carboxylase subunit [Erwinia
           tasmaniensis Et1/99]
          Length = 449

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 78/222 (35%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+      +E     +         L  DK+ +   +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAEQVERSGFIFIGPKADTIRLMGDKVSAITAMKKAGVPTVPGSDG 136

Query: 111 --ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
                          I  P +IK   GG   G+ V++ D+ +   +     ++ +  + D
Sbjct: 137 PLTEDMDKNRAFAKRIGYPVIIKASGGGGGRGMRVVRSDKDLEQSINMTKAEAKAAFNND 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+Y++    +   V+ D   +   +A           K          PA  I  +
Sbjct: 197 MVYMEKYLENPRHIEIQVLADGQGNAIYLAERDCSMQRRHQK-----VVEEAPAPGITEE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + + +      A   I  RG    +FL+   + + +++E+N 
Sbjct: 252 MRRYIGERCSKACIDISYRGAGTFEFLY--ENGEFYFIEMNT 291


>gi|323482996|ref|ZP_08088392.1| hypothetical protein HMPREF9474_00141 [Clostridium symbiosum
           WAL-14163]
 gi|323403702|gb|EGA96004.1| hypothetical protein HMPREF9474_00141 [Clostridium symbiosum
           WAL-14163]
          Length = 1123

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 52/286 (18%), Positives = 101/286 (35%), Gaps = 33/286 (11%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQIDVD---------------------RSVGLV 45
           G ++E + +   G     AL++ G +V  ++ +                       V  +
Sbjct: 47  GQAAEFDYA---GTQACRALKEEGLEVVLVNSNPATIMTDSAIADQVYIEPLTLEVVKRI 103

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   KPD   + L G  G    ++      LE   +    +       + D+   K  + 
Sbjct: 104 IDKEKPDSILSTLGGQTGLTLSMELAKEGFLESRGVTLLGASPETIDKAEDRQCFKDTME 163

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G PV PS +V      M     I  P +++P       G  + K  + +         
Sbjct: 164 EIGEPVIPSEVVTTVDAAMAFAEKIGFPVIVRPAFTLGGTGGGIAKTRRELDEIATAGIR 223

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   Q+L+E+ + G  E+   VM D+  +  EI V   + +     ++  +        
Sbjct: 224 LSPIHQILVEKCIAGWKEIEFEVMRDSVGN--EITVCSMENFDPVGIHTGDSIVIAPAVT 281

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +    Y+ ++  A    QA+G  G     F  +P S +   +E+N 
Sbjct: 282 LADKEYQMLRSAALNIIQAMGIEGGCNCQFALNPESFEYAVIEVNP 327



 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 28/223 (12%), Positives = 80/223 (35%), Gaps = 19/223 (8%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVC--PSILVNRFTMDSQHLISPPYVIKPL 133
            +P   +   +  ++ D+ R   ++    +      ++      + + + +  P +++P 
Sbjct: 674 GVPVLGTPADSIDMAEDRGRFNALLKKLNMKQPSGDTVYTEDEAIATANRLGYPVLVRPS 733

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS---LDVT 190
                  +I+   D  I   +         + +LI++Y+ G EL    + D     +   
Sbjct: 734 YVLGGQNMIIAYHDADIHEYMKIILEHKIENAILIDKYLMGTELEVDAICDGEDVLIPGI 793

Query: 191 EIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
              + ++  +S        +S  V PA  +       +   +     ++G +G+    ++
Sbjct: 794 MEHIERAGVHS-------GDSIAVYPAFMLTESQKDRIVDYSIRLALSLGTKGLINIQYV 846

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
               +  ++ +E+N +   T     P ++   G    +L   +
Sbjct: 847 LHEDT--IYIIEVNPRSSRT----VPYISKVTGVPMVDLATRI 883


>gi|238758364|ref|ZP_04619542.1| Biotin carboxylase [Yersinia aldovae ATCC 35236]
 gi|238703487|gb|EEP96026.1| Biotin carboxylase [Yersinia aldovae ATCC 35236]
          Length = 449

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 39/222 (17%), Positives = 81/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         L  DK+ +   +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAEQVERSGFIFIGPRAETIRLMGDKVSAINAMKKAGVPCVPGSDG 136

Query: 112 LVNRFT---MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
            ++  T         I  P +IK   GG   G+ V++ D+ +   +     ++ +  + D
Sbjct: 137 PLDDDTTKNKAFAKRIGYPVIIKASGGGGGRGMRVVRHDKDLEQSINMTRAEAKAAFNND 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+Y++    +   ++ D       +A           K          PA  I  +
Sbjct: 197 MVYMEKYLENPRHIEIQILADGQGKAIYLAERDCSMQRRHQK-----VVEEAPAPGITSE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + + +      A   IG RG    +FL+   + + +++E+N 
Sbjct: 252 MRRYIGERCAKACVDIGYRGAGTFEFLY--ENGEFYFIEMNT 291


>gi|169602485|ref|XP_001794664.1| hypothetical protein SNOG_04245 [Phaeosphaeria nodorum SN15]
 gi|160706181|gb|EAT88005.2| hypothetical protein SNOG_04245 [Phaeosphaeria nodorum SN15]
          Length = 1125

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 54/291 (18%), Positives = 101/291 (34%), Gaps = 41/291 (14%)

Query: 6   GGIS----SEREVSLSSGKACASALEDAGF--------------------KVSQIDVDRS 41
           GG+S     E + S   G     AL++AG                     ++  + V   
Sbjct: 101 GGLSIGQAGEFDYS---GSQALKALKEAGVKSVLLNPNIATIQTSHVLADEIYYLPVTPE 157

Query: 42  VGL-VLAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRS 96
               V+   KPD  F    G    +  VQ     + E   +    + +     S D+   
Sbjct: 158 YAEYVIQKEKPDGIFLSFGGQTALNLGVQMNKKGLFEKYGVKVLGTSVKTLETSEDRDLF 217

Query: 97  KQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154
            + +    +P+  SI V+     +D+   +  P +++       LG         +    
Sbjct: 218 ARALDEIDIPIAKSIAVSSIDEALDAAEKVGYPIIVRAAYALGGLGSGFANNADELR--D 275

Query: 155 LQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTH 213
           L + S     Q+L+E+ + G  E    V+ DAS +   I V   + +   L   + +S  
Sbjct: 276 LSARSLTLSPQILVEKSLKGWKEAEYEVVRDASDN--CITVCNMENFD-PLGVHTGDSIV 332

Query: 214 VLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
           V P++    + Y  ++  A    + +G  G     +   P       +E+N
Sbjct: 333 VSPSQTFSDEEYHMLRSAAIKIVRHLGVVGECNVQYALQPDGLDYRVIEVN 383



 Score = 52.4 bits (125), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 62/160 (38%), Gaps = 6/160 (3%)

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--QHLISPPYVIKPLKGGSSLGIIV 143
            S  + D+ +   ++ S GV       +  +         +  P +++P    S   + V
Sbjct: 697 TSTKAEDRHKFSSILDSIGVDQPAWKELTSYEDAKKFAESVGYPVLVRPSYVLSGAAMTV 756

Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYE 203
           I+ +  +   LL +SS +    ++I QY+DG +    +  DA     ++ V     +   
Sbjct: 757 IRSEDELQEKLLAASSVSPDHPVVITQYIDGAQE---IDCDAVASDGKVLVHAVSEHIEN 813

Query: 204 LKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
               S ++T V  P  +   I   V+ +A    +A    G
Sbjct: 814 AGVHSGDATLVLPPVNLDKRIQGRVKEIADKVAKAWNITG 853


>gi|89067605|ref|ZP_01155059.1| propionyl-CoA carboxylase, alpha subunit [Oceanicola granulosus
           HTCC2516]
 gi|89046575|gb|EAR52630.1| propionyl-CoA carboxylase, alpha subunit [Oceanicola granulosus
           HTCC2516]
          Length = 666

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 41/262 (15%), Positives = 85/262 (32%), Gaps = 36/262 (13%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+      L    + +    + A     DK+ SK++ +  GV   P    
Sbjct: 77  AVHPGYGFLSENPRFPQALAEAGVAFVGPPVRAIEAMGDKITSKKLAAEAGVSTVPGYMG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
            I      +     +  P +IK   GG   G+ +   D            ++++    D+
Sbjct: 137 LIADAEEAVKIAREVGYPVMIKASAGGGGKGMRIAWSDAEAREGFQSSKNEAAASFGDDR 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE++V     +   V+ D   +   +   +        K             +     
Sbjct: 197 IFIEKFVTQPRHIEIQVLADGHGNCVYLHERECSIQRRNQK----VIEEAPSPFLDPGTR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY---- 280
             +   A    QA+G +     +F+ D   +  ++LE+N +              +    
Sbjct: 253 AAMGAQAVALAQAVGYQSAGTVEFIVDG-DKNFYFLEMNTR----------LQVEHPVTE 301

Query: 281 --AGYSFRELLLWMVEDASCLR 300
              G    +L+  M+  A+  R
Sbjct: 302 LITGI---DLVEQMIRVAAGER 320


>gi|53726118|ref|YP_104048.1| acetyl-CoA carboxylase biotin carboxylase subunit [Burkholderia
           mallei ATCC 23344]
 gi|67643586|ref|ZP_00442331.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Burkholderia
           mallei GB8 horse 4]
 gi|121598446|ref|YP_991773.1| acetyl-CoA carboxylase biotin carboxylase subunit [Burkholderia
           mallei SAVP1]
 gi|124383372|ref|YP_001027266.1| acetyl-CoA carboxylase biotin carboxylase subunit [Burkholderia
           mallei NCTC 10229]
 gi|126450043|ref|YP_001082798.1| acetyl-CoA carboxylase biotin carboxylase subunit [Burkholderia
           mallei NCTC 10247]
 gi|166998584|ref|ZP_02264442.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Burkholderia
           mallei PRL-20]
 gi|254179028|ref|ZP_04885682.1| acetyl-CoA carboxylase, biotin carboxylase [Burkholderia mallei
           ATCC 10399]
 gi|254202767|ref|ZP_04909130.1| acetyl-CoA carboxylase, biotin carboxylase [Burkholderia mallei
           FMH]
 gi|254208109|ref|ZP_04914459.1| acetyl-CoA carboxylase, biotin carboxylase [Burkholderia mallei
           JHU]
 gi|52429541|gb|AAU50134.1| acetyl-CoA carboxylase, biotin carboxylase [Burkholderia mallei
           ATCC 23344]
 gi|121227256|gb|ABM49774.1| acetyl-CoA carboxylase, biotin carboxylase [Burkholderia mallei
           SAVP1]
 gi|124291392|gb|ABN00661.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Burkholderia
           mallei NCTC 10229]
 gi|126242913|gb|ABO06006.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Burkholderia
           mallei NCTC 10247]
 gi|147747014|gb|EDK54091.1| acetyl-CoA carboxylase, biotin carboxylase [Burkholderia mallei
           FMH]
 gi|147752003|gb|EDK59070.1| acetyl-CoA carboxylase, biotin carboxylase [Burkholderia mallei
           JHU]
 gi|160694942|gb|EDP84950.1| acetyl-CoA carboxylase, biotin carboxylase [Burkholderia mallei
           ATCC 10399]
 gi|238524958|gb|EEP88388.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Burkholderia
           mallei GB8 horse 4]
 gi|243065268|gb|EES47454.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Burkholderia
           mallei PRL-20]
          Length = 455

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 34/222 (15%), Positives = 78/222 (35%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         +  DK+ +KQ +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAERVEQSGFTFIGPRPDTIRMMGDKVTAKQTMIRTGVPCVPGSDG 136

Query: 112 ---LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
                 +  +     +  P +IK   GG   G+ V+  + ++   +     ++       
Sbjct: 137 ALPEDPKEIVKIARTVGYPVIIKAAGGGGGRGMRVVHTEAALVNAVNMTREEAGRAFGNP 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
           Q+ +E++++    +   V+ D+  +   +            K          PA  I   
Sbjct: 197 QVYMEKFLENPRHIEIQVLSDSHKNAVWLGERDCSMQRRHQK-----VIEEAPAPGIARR 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +   +      A + +G  G    +FL+   + + +++E+N 
Sbjct: 252 LIDRIGDRCADACKKMGYLGAGTFEFLY--ENNEFYFIEMNT 291


>gi|238764613|ref|ZP_04625559.1| Biotin carboxylase [Yersinia kristensenii ATCC 33638]
 gi|238697203|gb|EEP89974.1| Biotin carboxylase [Yersinia kristensenii ATCC 33638]
          Length = 449

 Score = 67.5 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 39/222 (17%), Positives = 82/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         L  DK+ +   +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAEQVERSGFIFIGPRAETIRLMGDKVSAINAMKKAGVPCVPGSDG 136

Query: 112 LVNRFTM---DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
            ++  T         I  P +IK   GG   G+ V++ D+ +   +     ++ +  + D
Sbjct: 137 PLDDDTAKNKAFAKRIGYPVIIKASGGGGGRGMRVVRHDKDLEQSINMTRAEAKAAFNND 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+Y++    +   ++ D   +   +A           K          PA  I  +
Sbjct: 197 MVYMEKYLENPRHIEIQILADGQGNAIYLAERDCSMQRRHQK-----VVEEAPAPGITSE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + + +      A   IG RG    +FL+   + + +++E+N 
Sbjct: 252 MRRHIGERCAKACVEIGYRGAGTFEFLY--ENGEFYFIEMNT 291


>gi|208780074|ref|ZP_03247417.1| carbamoyl-phosphate synthase, large subunit [Francisella novicida
           FTG]
 gi|208744078|gb|EDZ90379.1| carbamoyl-phosphate synthase, large subunit [Francisella novicida
           FTG]
          Length = 1094

 Score = 67.5 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 48/278 (17%), Positives = 100/278 (35%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG      L++ G+ V  +         D               SVG ++A  +PD    
Sbjct: 29  SGTQACKVLKEDGYTVYLVNSNPATIMTDPTTADKIFIEPITVESVGKIIARERPDAILP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      ILE   +    +   +   + ++ R  + ++  G+ V  +++
Sbjct: 89  TVGGQTALNCALALDKAGILEKYNVEMLGAKADSIDKAENRERFNKAMAKIGLEVPRNVV 148

Query: 113 VNRFTMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           V       + L  I  P +I+P       G  +    +     +    S +  +++LI++
Sbjct: 149 VQSMEQAYKALEDIGLPAIIRPSFTLGGSGGGIAYTKEEFEKIVKNGLSLSPTNEVLIDE 208

Query: 171 YVDG-IELTCGVMGDASL-DVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEV 227
            + G  E    V+ D +   +   ++   D           +S  V PA  +    Y+ +
Sbjct: 209 SILGWKEYEMEVIRDKADNSIIVCSIENIDPMGIHT----GDSITVAPALTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P   K+  +E+N 
Sbjct: 265 RDASIAVLREIGVETGGSNVQFAVNPKDGKLVVIEMNP 302



 Score = 61.3 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 34/221 (15%), Positives = 85/221 (38%), Gaps = 13/221 (5%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI--SPPYVIKPL 133
            IP   +      L+ D+ R K+++   G+    + +        + ++    P V++P 
Sbjct: 673 NIPILGTDPDKIDLAEDRERFKELLDKVGLKQPLNTIAYTINELKKKIVNVGYPVVVRPS 732

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEI 192
                  + +I   + +   +  +S       +LI++++ D  EL    + D    V   
Sbjct: 733 NVLGGRAMEIIHSQEELDAYIKTNSKCILEGPILIDKFLEDATELDVDALADGGERVFVA 792

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
            + +   +  E    S +S   +P + +  +  +EV++      + +   G+    F + 
Sbjct: 793 GIME---HIEEAGIHSGDSACSIPTRSLSNEQIEEVKQATIKLARELNVIGLMNVQFAY- 848

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
             + +++ +E+N +   T     P +A   G S   +   +
Sbjct: 849 -QNGQLYVIEVNPRASRT----VPFVAKATGNSIANIATKL 884


>gi|306823312|ref|ZP_07456687.1| carbamoyl-phosphate synthase, large subunit [Bifidobacterium
           dentium ATCC 27679]
 gi|309802567|ref|ZP_07696671.1| carbamoyl-phosphate synthase, large subunit [Bifidobacterium
           dentium JCVIHMP022]
 gi|304553019|gb|EFM40931.1| carbamoyl-phosphate synthase, large subunit [Bifidobacterium
           dentium ATCC 27679]
 gi|308220631|gb|EFO76939.1| carbamoyl-phosphate synthase, large subunit [Bifidobacterium
           dentium JCVIHMP022]
          Length = 1126

 Score = 67.5 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 44/288 (15%), Positives = 103/288 (35%), Gaps = 36/288 (12%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQIDVDRS---------------------VGLV 45
           G ++E + S   G      L + G +V  ++ + +                     +  +
Sbjct: 21  GQAAEFDYS---GTQACRVLREEGIRVILVNSNPATIMTDPEMADATYIEPISTPILEQI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +A  +PD     L G    +  +      +L+  ++    + + A     D+   K+VV 
Sbjct: 78  IAKERPDALLPTLGGQTALNAAMALGEAGVLKKYDVELIGASLEAIDRGEDRELFKKVVE 137

Query: 102 SCGVPVCPSILVNRFTMDS--QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G     S + +              P V++P      LG  +   ++ +         
Sbjct: 138 EAGAESARSDIAHSIEEVDRIAEKFGYPLVVRPSFTMGGLGSGIAHDEEELHRIAGAGIH 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
           ++  D++LIE+ ++G  E    +M D   +V  +   ++      +   + +S  V P  
Sbjct: 198 YSPTDEVLIEEGIEGWKEYELELMRDKKDNVVVVCPIENVD---PVGVHTGDSITVAPVF 254

Query: 219 -IPLDIYKEVQRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
            +    Y++++ +     + +G   G     F   P + ++  +E+N 
Sbjct: 255 TLTDREYQKLRDIGIAIIRGVGVDTGGCNIQFAIHPDTGRIIVIEMNP 302



 Score = 51.7 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 33/233 (14%), Positives = 75/233 (32%), Gaps = 29/233 (12%)

Query: 67  LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTMDSQHLI 124
            + A L+   +P   +   +  L+ ++    +V+    +        L      ++ H I
Sbjct: 651 SLAARLKAAGVPILGTTPESIDLAENRELFGEVLKKADMNAPRYGTALSLEEAREAAHGI 710

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
             P +++P       G+ ++  D  +   + ++      D +     V G   +  ++  
Sbjct: 711 GYPVLVRPSYVLGGRGMEIVYDDAQLRKYVDRALREAQADTV-----VSGRLPSPLLIDK 765

Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK--------------IPLDIYKEVQRL 230
              D  EI V     +  E  Y      HV  A               +  D  + ++  
Sbjct: 766 FLQDAVEIDV--DALFDGEELYIGGIMEHVEEAGVHSGDAACTLPPSTLSDDQIRRLREG 823

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283
            +   +  G +G+    + F      ++ +E N +   T     P  +   G 
Sbjct: 824 TYAIAKGCGVQGLINVQYAFMA--NTLYVIEANPRASRT----VPFASKATGV 870


>gi|283455660|ref|YP_003360224.1| carbamoyl-phosphate synthase large chain [Bifidobacterium dentium
           Bd1]
 gi|283102294|gb|ADB09400.1| carB Carbamoyl-phosphate synthase large chain [Bifidobacterium
           dentium Bd1]
          Length = 1126

 Score = 67.5 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 44/288 (15%), Positives = 103/288 (35%), Gaps = 36/288 (12%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQIDVDRS---------------------VGLV 45
           G ++E + S   G      L + G +V  ++ + +                     +  +
Sbjct: 21  GQAAEFDYS---GTQACRVLREEGIRVILVNSNPATIMTDPEMADATYIEPISTPILEQI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +A  +PD     L G    +  +      +L+  ++    + + A     D+   K+VV 
Sbjct: 78  IAKERPDALLPTLGGQTALNAAMALGEAGVLKKYDVELIGASLEAIDRGEDRELFKKVVE 137

Query: 102 SCGVPVCPSILVNRFTMDS--QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G     S + +              P V++P      LG  +   ++ +         
Sbjct: 138 EAGAESARSDIAHSIEEVDRIAEKFGYPLVVRPSFTMGGLGSGIAHDEEELHRIAGAGIH 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
           ++  D++LIE+ ++G  E    +M D   +V  +   ++      +   + +S  V P  
Sbjct: 198 YSPTDEVLIEEGIEGWKEYELELMRDKKDNVVVVCPIENVD---PVGVHTGDSITVAPVF 254

Query: 219 -IPLDIYKEVQRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
            +    Y++++ +     + +G   G     F   P + ++  +E+N 
Sbjct: 255 TLTDREYQKLRDIGIAIIRGVGVDTGGCNIQFAIHPDTGRIIVIEMNP 302



 Score = 51.7 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 33/233 (14%), Positives = 75/233 (32%), Gaps = 29/233 (12%)

Query: 67  LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTMDSQHLI 124
            + A L+   +P   +   +  L+ ++    +V+    +        L      ++ H I
Sbjct: 651 SLAARLKAAGVPILGTTPESIDLAENRELFGEVLKKADMNAPRYGTALSLEEAREAAHGI 710

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
             P +++P       G+ ++  D  +   + ++      D +     V G   +  ++  
Sbjct: 711 GYPVLVRPSYVLGGRGMEIVYDDAQLRKYVDRALREAQADTV-----VSGRLPSPLLIDK 765

Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK--------------IPLDIYKEVQRL 230
              D  EI V     +  E  Y      HV  A               +  D  + ++  
Sbjct: 766 FLQDAVEIDV--DALFDGEELYIGGIMEHVEEAGVHSGDAACTLPPSTLSDDQIRRLREG 823

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283
            +   +  G +G+    + F      ++ +E N +   T     P  +   G 
Sbjct: 824 TYAIAKGCGVQGLINVQYAFMA--NTLYVIEANPRASRT----VPFASKATGV 870


>gi|148227386|ref|NP_001083226.1| pyruvate carboxylase, gene 1 [Xenopus laevis]
 gi|37748213|gb|AAH59308.1| MGC68971 protein [Xenopus laevis]
          Length = 1177

 Score = 67.5 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 34/233 (14%), Positives = 79/233 (33%), Gaps = 17/233 (7%)

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
            +  V    + D      +G   E            + +            DK+ ++ + 
Sbjct: 101 DIIKVAKANEVDAVHPG-YGFLSERSDFAQACTDAGVRFIGPSAEVVRKMGDKVEARAIA 159

Query: 101 SSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL---- 152
            S GVPV P     I       +  +    P + K   GG   G+ V++  + +      
Sbjct: 160 VSAGVPVVPGTDAPISCLTEAKEFSNKYGFPIIFKAAYGGGGRGMRVVRSYEELEENYTR 219

Query: 153 DLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
              ++ S      L +E++++    +   ++GD   +V  +           ++      
Sbjct: 220 AYSEALSAFGNGALFVEKFIEKPRHIEVQILGDKYGNVVHLYE-----RDCSVQRRHQKV 274

Query: 212 THVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
             + P A++ L +   +   +    + +G       +FL D   +  +++E+N
Sbjct: 275 VEIAPAAQLDLQLRDRLTHDSVKLAKQVGYENAGTVEFLVDKHGKH-YFIEVN 326


>gi|86136520|ref|ZP_01055099.1| carbamoyl-phosphate synthase, large subunit [Roseobacter sp.
           MED193]
 gi|85827394|gb|EAQ47590.1| carbamoyl-phosphate synthase, large subunit [Roseobacter sp.
           MED193]
          Length = 1118

 Score = 67.5 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 47/267 (17%), Positives = 103/267 (38%), Gaps = 33/267 (12%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAI---- 71
           AL DAG++   +         D D S  L    L  +    +L     E+G +  +    
Sbjct: 611 ALTDAGYETIMVNCNPETVSTDYDTSDRLYFEPLTFEHVMEILRVEQ-ENGTLHGVIVQF 669

Query: 72  -----------LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTM 118
                      LE   IP   +   A  L+ D+ R +++V++ G+    + +   +   +
Sbjct: 670 GGQTPLKLANALEEEGIPILGTSPDAIDLAEDRERFQELVNNLGLKQPHNGIASTDEQAL 729

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           +    I  P VI+P        + +++    +   + ++   +    +L++ Y+ G    
Sbjct: 730 EIAEEIGFPLVIRPSYVLGGRAMEIVRDMDQLKRYINEAVVVSGDSPVLLDSYLSG---A 786

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELK-YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
             +  DA  D T++ V     +  E   +S  ++  + P  +  +I +E++   +   +A
Sbjct: 787 VELDVDAICDGTDVHVAGIMQHIEEAGVHSGDSACSLPPYSLSKEILEEIKTQTYALAKA 846

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINV 264
           +   G+    F        +F +E+N 
Sbjct: 847 LNVVGLMNIQFAI--KDGVIFLIEVNP 871



 Score = 56.3 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 45/291 (15%), Positives = 97/291 (33%), Gaps = 48/291 (16%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G++V  +         D                V  ++   +PD    
Sbjct: 29  SGAQACKALKEEGYRVILVNSNPATIMTDPGLADATYIEPITPEVVAKIIEKERPDALLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G  G +  +      +LE   +    +   A  ++ D+   +  +   G+    + +
Sbjct: 89  TMGGQTGLNTSLALEEMGVLEEFGVEMIGATRDAIEMAEDRKLFRDAMDRLGIENPRATI 148

Query: 113 VN---------------RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
           V                R  +++   I  P +I+P       G  V    +         
Sbjct: 149 VTAPKLEDGKADLNEGVRIALETLEDIGLPAIIRPAFTMGGTGGGVAYNREDYEHFCRTG 208

Query: 158 SSWNHGDQLLIEQYVDG-IELTCGVMGDASL-DVTEIAVPKSDFYSYELKYSSLNSTHVL 215
              +  +Q+L+++ + G  E    V+ D +   +   A+   D           +S  V 
Sbjct: 209 MDASPVNQILVDESLLGWKEFEMEVVRDKADNAIIVCAIENIDPMGVHT----GDSITVA 264

Query: 216 PA-KIPLDIYKEVQRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           PA  +    Y+ ++  +    + IG   G S   +  +P   ++  +E+N 
Sbjct: 265 PALTLTDKEYQIMRTHSINVLREIGVETGGSNVQWAVNPADGRMVVIEMNP 315


>gi|326333693|ref|ZP_08199927.1| acetyl-CoA carboxylase subunit alpha [Nocardioidaceae bacterium
           Broad-1]
 gi|325948471|gb|EGD40577.1| acetyl-CoA carboxylase subunit alpha [Nocardioidaceae bacterium
           Broad-1]
          Length = 594

 Score = 67.5 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 46/241 (19%), Positives = 88/241 (36%), Gaps = 28/241 (11%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           IDV R  G    H  P   F   + +F      QA+++   + +      A     DK +
Sbjct: 75  IDVARQSGADSVH--PGYGFLAENADFA-----QAVID-AGLTWIGPSPEAIDALGDKAK 126

Query: 96  SKQVVSSCGVPVCPSILVNRFTMDSQHLISP------PYVIKPLKGGSSLGIIVIKKDQS 149
           +KQ+    G P+ P   +     D+  ++S       P  IK + GG   G+ V +  + 
Sbjct: 127 AKQIALKAGAPLAPG--LKDPVKDASEIVSFAEEYGLPVAIKAVFGGGGRGLKVARTLEE 184

Query: 150 IPL----DLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYEL 204
           IP      + ++       + L+E+++D    +    + D   +V  ++          L
Sbjct: 185 IPELYESAVREAVGAFGRGECLVEKFLDKPRHVETQCLADKHGNVVVVST-----RDCSL 239

Query: 205 KYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
           +          PA  +  +  K +   +    +  G  G    +FL       + +LE+N
Sbjct: 240 QRRHQKLVEEAPAPFLTDEQNKRLYESSKAILREAGYVGAGTCEFLV-AADGTISFLEVN 298

Query: 264 V 264
            
Sbjct: 299 T 299


>gi|309776342|ref|ZP_07671330.1| carbamoyl-phosphate synthase, large subunit [Erysipelotrichaceae
           bacterium 3_1_53]
 gi|308915938|gb|EFP61690.1| carbamoyl-phosphate synthase, large subunit [Erysipelotrichaceae
           bacterium 3_1_53]
          Length = 1068

 Score = 67.5 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 26/214 (12%), Positives = 75/214 (35%), Gaps = 19/214 (8%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--QHLISPPYVIKPL 133
            +    + +     + D+   + ++    +P                 + I  P +++P 
Sbjct: 650 GVKILGTSLENIDRAEDRHAFEAMLHELDIPQPTGQTAVEVEEAVKIANRIGYPVLVRPS 709

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSW-NHGDQLLIEQYVDGIELTCGVMGDAS---LDV 189
                  + ++  D+ + + +  +    +H   +L+++Y+ G EL    + D     +  
Sbjct: 710 YVLGGRAMEIVHNDEDLRIYMATAVKEISHDAPILVDKYIVGKELEIDAICDGEQVYIPG 769

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               + ++  +S        +S  V P + I   +   +        +     G+    F
Sbjct: 770 IMEHIERAGIHS-------GDSISVYPPQTISDKVRDTIIDYGIRIGKGFHFIGLYNIQF 822

Query: 249 LFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277
           + +  + +V+ LE+N       P ++ ++  P  
Sbjct: 823 IVEAGTEQVYVLEVNPRSSRTVPFLSKITGVPMS 856



 Score = 56.7 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 57/315 (18%), Positives = 116/315 (36%), Gaps = 39/315 (12%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQID------------VDRSVGLVLA------- 47
           G ++E + +   G     +L + G++V  I+             DR     L        
Sbjct: 21  GQAAEFDYA---GSQACQSLREEGYEVILINSNPATIMTDTAIADRVYIEPLTLEFASRI 77

Query: 48  --HLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
               +PD     L G  G + +V+     IL+  E+    + + A   + D+   + ++ 
Sbjct: 78  IYKERPDAILGSLGGQTGLNLVVELANSGILKEYEVEILGTDLDAINKAEDRELFRDLMY 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
               PV  S +V+     +   + I  P V++P       G      ++ + +       
Sbjct: 138 EIKEPVPESDIVHTVEEAISFANEIGYPVVVRPAYTLGGTGGGFADNEEELRVIADNGLK 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   Q LIE+ + G  E+   VM D + +   I V   +     +   + +S  V P +
Sbjct: 198 LSPVHQCLIERSIAGFKEIEYEVMRDYNDNA--IVVCNMENID-PVGIHTGDSMVVAPVQ 254

Query: 219 -IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
            +    ++ ++  +    +A+   G        DP S K + +E+N  P ++  S     
Sbjct: 255 TLSDREHQMLRNASLKIIRALKICGGCNVQLALDPNSFKYYIIEVN--PRVSRSS--ALA 310

Query: 278 AAYAGYSFRELLLWM 292
           +   GY   +L   +
Sbjct: 311 SKATGYPIAKLAAKI 325


>gi|195382414|ref|XP_002049925.1| GJ20479 [Drosophila virilis]
 gi|194144722|gb|EDW61118.1| GJ20479 [Drosophila virilis]
          Length = 1181

 Score = 67.5 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 31/205 (15%), Positives = 76/205 (37%), Gaps = 17/205 (8%)

Query: 69  QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLI 124
           QA+++   I +            DKM +++      VP+ P     +      +      
Sbjct: 131 QAVID-AGIRFIGPTPEVVQNMGDKMAARKAAGEADVPIVPGSIGAVTSKEEALSFCEKH 189

Query: 125 SPPYVIKPLKGGSSLGI----IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTC 179
             P + K   GG   G+     + + ++S      ++ +     ++ IE++++    +  
Sbjct: 190 GLPVIFKAAHGGGGRGMRVVEKMEEVEESFERASHEALASFGNGEMFIEKFIERPRHVEI 249

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAI 238
            V+GD + +V  +           ++        + PA  +  +I  ++   A    + +
Sbjct: 250 QVLGDKAGNVVHLYE-----RDCSVQRRHQKVVEIAPAPHLAEEIRDKITDAALRLARHV 304

Query: 239 GCRGISRSDFLFDPLSRKVFWLEIN 263
           G       +FL D    + +++E+N
Sbjct: 305 GYENAGTVEFLCDER-GEFYFIEVN 328


>gi|168212622|ref|ZP_02638247.1| carbamoylphosphate synthase, large subunit [Clostridium perfringens
           CPE str. F4969]
 gi|170715880|gb|EDT28062.1| carbamoylphosphate synthase, large subunit [Clostridium perfringens
           CPE str. F4969]
          Length = 318

 Score = 67.5 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 36/197 (18%), Positives = 68/197 (34%), Gaps = 24/197 (12%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-SILVNRFTMDSQH-LISPPYV 129
            E + +    S    + L  DK    + +S  G       I +++F  D  +  I  P  
Sbjct: 91  FEEIGVKIIGSNYETTELCFDKYEFFKFLSEFGFKCAKTYISLDKFKDDYNNGKIKFPVF 150

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           IKP  G +SLGI  +   + + L       +N    ++I++++ G E       D     
Sbjct: 151 IKPRTGSASLGINKVDFMEHLEL------LYNLFPNMIIQEFIPGQEYGVDAYID----- 199

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKI--PLDIYKEVQRLAFLAHQAIGCRGISRSD 247
               +       +  K   + S     A      +++  +++L       +  RG    D
Sbjct: 200 ---LISNEVISIFAKKKIRMRSGETDKAVSVKNENLFNIIEQLVRK----LNLRGTVDID 252

Query: 248 FLFDPLSRKVFWLEINV 264
                 + +    EIN 
Sbjct: 253 VF--ESNGEWIISEINP 267


>gi|167759935|ref|ZP_02432062.1| hypothetical protein CLOSCI_02299 [Clostridium scindens ATCC 35704]
 gi|167662554|gb|EDS06684.1| hypothetical protein CLOSCI_02299 [Clostridium scindens ATCC 35704]
          Length = 444

 Score = 67.5 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 34/221 (15%), Positives = 73/221 (33%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  FG   E+     + E   I +        A   +K  ++  + + GVPV P    
Sbjct: 77  AIHPGFGFLSENAKFAELCEQCNITFIGPDSKVIARLGNKQEARNTMVAAGVPVIPGSKE 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS-----SSWNHGD 164
            I   +        +  P ++K   GG   G+ V    +        +      ++   +
Sbjct: 137 PIYDAKEGARIADEVGYPVIVKAALGGGGKGMRVANTPEEFQQSFKTAQKETQMAFG-DN 195

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            + IE +V     +   ++ D   +V  +            K             +  ++
Sbjct: 196 TMYIEHFVQHPRHIEFQILADGYGNVIHLGERDCSIQRNHQKMI----EESPSVALSEEL 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +++   A  A +A G       +FL    +   +++E+N 
Sbjct: 252 RRKMGDAAVKAAKAAGYVNAGTIEFLL-EKNGNFYFMEMNT 291


>gi|158315737|ref|YP_001508245.1| carbamoyl-phosphate synthase L chain ATP-binding [Frankia sp.
           EAN1pec]
 gi|158111142|gb|ABW13339.1| Carbamoyl-phosphate synthase L chain ATP-binding [Frankia sp.
           EAN1pec]
          Length = 448

 Score = 67.5 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 77/223 (34%), Gaps = 25/223 (11%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+     I     + +        A   DK  +++++S  G+P+ P    
Sbjct: 77  AVHPGYGFLSENPDFAEICAAEGLTFIGPPAEVMARLGDKAVARRIMSEAGLPLLPG--- 133

Query: 114 NRFTMDSQH-------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNH 162
           +R T D           I  P +IK   GG   G+ V+                + +   
Sbjct: 134 SRDTPDHPEQAAQVAAEIGYPVIIKAAAGGGGRGMSVVHDPDGFERAYRHTRSTAQAVFG 193

Query: 163 GDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IP 220
             +L +E+Y+     +   V+ DA                  L+          PA  +P
Sbjct: 194 DGRLYVERYLASARHVEVQVLADAHGAAV-----HLGARDCSLQRRHQKLVEETPAPALP 248

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            +I + +   A     A G  G    +FL D   R  +++E+N
Sbjct: 249 AEIVEPLCAAAVRGTLASGYVGAGTFEFLVDGEGR-FYFMEVN 290


>gi|53720592|ref|YP_109578.1| acetyl-CoA carboxylase biotin carboxylase subunit [Burkholderia
           pseudomallei K96243]
 gi|76811288|ref|YP_334872.1| acetyl-CoA carboxylase biotin carboxylase subunit [Burkholderia
           pseudomallei 1710b]
 gi|126438887|ref|YP_001060477.1| acetyl-CoA carboxylase biotin carboxylase subunit [Burkholderia
           pseudomallei 668]
 gi|126454467|ref|YP_001067741.1| acetyl-CoA carboxylase biotin carboxylase subunit [Burkholderia
           pseudomallei 1106a]
 gi|134280032|ref|ZP_01766743.1| acetyl-CoA carboxylase, biotin carboxylase [Burkholderia
           pseudomallei 305]
 gi|167721286|ref|ZP_02404522.1| acetyl-CoA carboxylase biotin carboxylase subunit [Burkholderia
           pseudomallei DM98]
 gi|167740255|ref|ZP_02413029.1| acetyl-CoA carboxylase biotin carboxylase subunit [Burkholderia
           pseudomallei 14]
 gi|167817473|ref|ZP_02449153.1| acetyl-CoA carboxylase biotin carboxylase subunit [Burkholderia
           pseudomallei 91]
 gi|167825879|ref|ZP_02457350.1| acetyl-CoA carboxylase biotin carboxylase subunit [Burkholderia
           pseudomallei 9]
 gi|167847362|ref|ZP_02472870.1| acetyl-CoA carboxylase biotin carboxylase subunit [Burkholderia
           pseudomallei B7210]
 gi|167895950|ref|ZP_02483352.1| acetyl-CoA carboxylase biotin carboxylase subunit [Burkholderia
           pseudomallei 7894]
 gi|167904336|ref|ZP_02491541.1| acetyl-CoA carboxylase biotin carboxylase subunit [Burkholderia
           pseudomallei NCTC 13177]
 gi|167920548|ref|ZP_02507639.1| acetyl-CoA carboxylase biotin carboxylase subunit [Burkholderia
           pseudomallei BCC215]
 gi|217420966|ref|ZP_03452471.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Burkholderia
           pseudomallei 576]
 gi|226196852|ref|ZP_03792431.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Burkholderia
           pseudomallei Pakistan 9]
 gi|237813871|ref|YP_002898322.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Burkholderia
           pseudomallei MSHR346]
 gi|242317584|ref|ZP_04816600.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Burkholderia
           pseudomallei 1106b]
 gi|254180593|ref|ZP_04887191.1| acetyl-CoA carboxylase, biotin carboxylase [Burkholderia
           pseudomallei 1655]
 gi|254190970|ref|ZP_04897476.1| acetyl-CoA carboxylase, biotin carboxylase [Burkholderia
           pseudomallei Pasteur 52237]
 gi|254199056|ref|ZP_04905471.1| acetyl-CoA carboxylase, biotin carboxylase [Burkholderia
           pseudomallei S13]
 gi|254262087|ref|ZP_04953141.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Burkholderia
           pseudomallei 1710a]
 gi|254299320|ref|ZP_04966770.1| acetyl-CoA carboxylase, biotin carboxylase [Burkholderia
           pseudomallei 406e]
 gi|52211006|emb|CAH36994.1| biotin carboxylase [Burkholderia pseudomallei K96243]
 gi|76580741|gb|ABA50216.1| acetyl-CoA carboxylase, biotin carboxylase [Burkholderia
           pseudomallei 1710b]
 gi|126218380|gb|ABN81886.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Burkholderia
           pseudomallei 668]
 gi|126228109|gb|ABN91649.1| acetyl-CoA carboxylase, biotin carboxylase [Burkholderia
           pseudomallei 1106a]
 gi|134248039|gb|EBA48122.1| acetyl-CoA carboxylase, biotin carboxylase [Burkholderia
           pseudomallei 305]
 gi|157808987|gb|EDO86157.1| acetyl-CoA carboxylase, biotin carboxylase [Burkholderia
           pseudomallei 406e]
 gi|157938644|gb|EDO94314.1| acetyl-CoA carboxylase, biotin carboxylase [Burkholderia
           pseudomallei Pasteur 52237]
 gi|169656886|gb|EDS88283.1| acetyl-CoA carboxylase, biotin carboxylase [Burkholderia
           pseudomallei S13]
 gi|184211132|gb|EDU08175.1| acetyl-CoA carboxylase, biotin carboxylase [Burkholderia
           pseudomallei 1655]
 gi|217396378|gb|EEC36395.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Burkholderia
           pseudomallei 576]
 gi|225931112|gb|EEH27120.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Burkholderia
           pseudomallei Pakistan 9]
 gi|237503919|gb|ACQ96237.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Burkholderia
           pseudomallei MSHR346]
 gi|242140823|gb|EES27225.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Burkholderia
           pseudomallei 1106b]
 gi|254220776|gb|EET10160.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Burkholderia
           pseudomallei 1710a]
          Length = 455

 Score = 67.5 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 34/222 (15%), Positives = 78/222 (35%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         +  DK+ +KQ +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAERVEQSGFTFIGPRPDTIRMMGDKVTAKQTMIRTGVPCVPGSDG 136

Query: 112 ---LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
                 +  +     +  P +IK   GG   G+ V+  + ++   +     ++       
Sbjct: 137 ALPEDPKEIVKIARTVGYPVIIKAAGGGGGRGMRVVHTEAALVNAVNMTREEAGRAFGNP 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
           Q+ +E++++    +   V+ D+  +   +            K          PA  I   
Sbjct: 197 QVYMEKFLENPRHIEIQVLSDSHKNAVWLGERDCSMQRRHQK-----VIEEAPAPGIARR 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +   +      A + +G  G    +FL+   + + +++E+N 
Sbjct: 252 LIDRIGDRCADACKKMGYLGAGTFEFLY--ENNEFYFIEMNT 291


>gi|117918999|ref|YP_868191.1| alpha-L-glutamate ligase [Shewanella sp. ANA-3]
 gi|190360190|sp|A0KSL6|RIMK1_SHESA RecName: Full=Ribosomal protein S6 modification protein 1
 gi|117611331|gb|ABK46785.1| alpha-L-glutamate ligases, RimK family [Shewanella sp. ANA-3]
          Length = 301

 Score = 67.5 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 55/271 (20%), Positives = 108/271 (39%), Gaps = 35/271 (12%)

Query: 16  LSSGKACASALEDAGFKVSQID----------VDRSVGLVLAHL-KPDLAFNVLHGNFGE 64
           L S +   +A E  G +   I+          +  S+      L   D     +H +   
Sbjct: 12  LYSTRRLVAACESRGHEAVVINTLNCYMNINSIKPSIHYQGQELTGFDAIIPRIHASVTF 71

Query: 65  DGL-VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            G  V    E++ + +  +  ++ A S DK+R+ Q++S  G+ +  +   N+   D   L
Sbjct: 72  YGCAVVRQFEMMGV-FAANDSISIARSRDKLRALQLLSRKGIGMPITGFANKPN-DIPDL 129

Query: 124 I----SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD---GIE 176
           I      P VIK L+G   +G+++ +   +     +  +       +++++Y+    G +
Sbjct: 130 INMVGGAPLVIKLLEGTQGIGVVLAETKTAAES--VIEAFLGLKANIMVQEYIKESNGSD 187

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           + C V+GD  +   +   P+ DF S            + PA+         +++A  A +
Sbjct: 188 IRCFVVGDKVVASMKRQGPEGDFRSNLHLGGCGEKVKITPAE---------RKMAVAAVK 238

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPG 267
           A+G       D      +R    LE+N  PG
Sbjct: 239 AMGLVVAG-VD--ILRSNRGPLILEVNSAPG 266


>gi|291546723|emb|CBL19831.1| Biotin carboxylase [Ruminococcus sp. SR1/5]
          Length = 401

 Score = 67.5 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 35/195 (17%), Positives = 72/195 (36%), Gaps = 15/195 (7%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYV 129
            + L +  T     A+ +  DK + K+     GV       ++      ++ + I  P +
Sbjct: 89  CDSLGL--TGLPEKAAIMCNDKSKMKKAFMEYGVSTAQYFEISNEEELENALNKIKLPVI 146

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASL 187
           IK      S GI + K ++        +         ++E++++G E      V  +  L
Sbjct: 147 IKATDLQGSNGIYIAKTEKDAYDGFHAAMGLTKRSYCIVEEFIEGWEFGAQAFVYNNEVL 206

Query: 188 DVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS-RS 246
            V  +      + S+      +   H +P     D+YK+ +     A +A+G    +   
Sbjct: 207 FV--MPHGDETYMSHTA----VPVGHYVPLDCDEDVYKQTEIAVKSAIKALGLNNCAVNV 260

Query: 247 DFLFDPLSRKVFWLE 261
           D +      KV+ +E
Sbjct: 261 DLILR--DNKVYVIE 273


>gi|253563113|ref|ZP_04840570.1| biotin carboxylase [Bacteroides sp. 3_2_5]
 gi|265763001|ref|ZP_06091569.1| acetyl-CoA carboxylase, biotin carboxylase [Bacteroides sp. 2_1_16]
 gi|251946889|gb|EES87171.1| biotin carboxylase [Bacteroides sp. 3_2_5]
 gi|263255609|gb|EEZ26955.1| acetyl-CoA carboxylase, biotin carboxylase [Bacteroides sp. 2_1_16]
          Length = 503

 Score = 67.5 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 80/220 (36%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+       E   + +        A    K  +++++   G+P+ P    
Sbjct: 76  AIHPGYGFLSENADFARRCEEEGVIFIGPSADIIARMGIKTEARRIMREAGLPIVPGTED 135

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN----HGDQ 165
            +            +  P ++K L GG   G+ +++ ++ +   L  S S        D 
Sbjct: 136 PVKGIAEAKKVAAEVGYPIMLKALAGGGGKGMRLVRSEEEMETALRLSQSEAGTSFGNDA 195

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+Y++    +   ++GD   +V  +   +        K             +  +  
Sbjct: 196 VYIEKYIENPHHIEVQILGDKYGNVIHLYERECSIQRRNQK----VIEESPSPFVKPETR 251

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            ++ ++A  A + I        +F+ D   +  ++LE+N 
Sbjct: 252 AKMLKVAVEACKRINYYSAGTLEFMMDK-DQNFYFLEMNT 290


>gi|254038419|ref|ZP_04872477.1| acetyl CoA carboxylase [Escherichia sp. 1_1_43]
 gi|226840043|gb|EEH72064.1| acetyl CoA carboxylase [Escherichia sp. 1_1_43]
          Length = 462

 Score = 67.5 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 80/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         L  DK+ +   +   GVP  P    
Sbjct: 90  AIHPGYGFLSENANFAEQVERSGFIFIGPKAETIRLMGDKVSAIAAMKKAGVPCVPGSDG 149

Query: 112 -LVNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
            L +    +      I  P +IK   GG   G+ V++ D  +   +     ++ +    D
Sbjct: 150 PLGDDMDKNRAIAKRIGYPVIIKASGGGGGRGMRVVRGDAELAQSISMTRAEAKAAFSND 209

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+Y++    +   V+ D   +   +A           K          PA  I  +
Sbjct: 210 MVYMEKYLENPRHVEIQVLADGQGNAIYLAERDCSMQRRHQK-----VVEEAPAPGITPE 264

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + + +      A   IG RG    +FLF   + + +++E+N 
Sbjct: 265 LRRYIGERCAKACVDIGYRGAGTFEFLF--ENGEFYFIEMNT 304


>gi|60681120|ref|YP_211264.1| putative biotin carboxylase 1 [Bacteroides fragilis NCTC 9343]
 gi|60492554|emb|CAH07325.1| putative biotin carboxylase 1 [Bacteroides fragilis NCTC 9343]
          Length = 503

 Score = 67.5 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 79/220 (35%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       E   + +        A    K  +++++   G+P+ P    
Sbjct: 76  AIHPGYGFLSENADFARRCEEEGVIFIGPSADIIARMGIKTEARRIMREAGLPIVPGTED 135

Query: 114 N----RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN----HGDQ 165
                         +  P ++K L GG   G+ +++ ++ +   L  S S        D 
Sbjct: 136 PMKGIAEAKKVAAEVGYPIMLKALAGGGGKGMRLVRSEEEMETALRLSQSEAGTSFGNDA 195

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+Y++    +   ++GD   +V  +   +        K             +  +  
Sbjct: 196 VYIEKYIENPHHIEVQILGDKYGNVIHLYERECSIQRRNQK----VIEESPSPFVKPETR 251

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            ++ ++A  A + I        +F+ D   +  ++LE+N 
Sbjct: 252 AKMLKVAVEACKRINYYSAGTLEFMMDK-DQNFYFLEMNT 290


>gi|296116011|ref|ZP_06834631.1| acetyl-CoA carboxylase biotin carboxylase subunit
           [Gluconacetobacter hansenii ATCC 23769]
 gi|295977365|gb|EFG84123.1| acetyl-CoA carboxylase biotin carboxylase subunit
           [Gluconacetobacter hansenii ATCC 23769]
          Length = 445

 Score = 67.5 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 76/221 (34%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+      +E   + +      +  +  DK+ +K+ +   GVP  P    
Sbjct: 72  AIHPGYGFLSENADFADAVEKAGLTFIGPTGASIRMMGDKITAKRAMREAGVPCVPGSDG 131

Query: 111 -ILVNRFTMDSQHL-ISPPYVIKPLKGGSSLGIIVIKKDQSIPLD----LLQSSSWNHGD 164
            +  +  T+ +  L +  P ++K   GG   G+ V+++   +         ++       
Sbjct: 132 PLPADMETVKAIALDVGFPVIVKASGGGGGRGMRVVERAADLAQAVTLTAKEAEQAFGNP 191

Query: 165 QLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            L +E+++     +   V+ D       +            K     S       I    
Sbjct: 192 TLYLERFMQKPRHIEIQVLCDTHGTALWLGARDCSLQRRHQKVLEEASA----PGITPQT 247

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             E+      A + IG RG    +FL+        ++E+N 
Sbjct: 248 IAEIGTRCAEACRRIGYRGAGTFEFLY--EDGVFAFIEMNT 286


>gi|258654962|ref|YP_003204118.1| cyanophycin synthetase [Nakamurella multipartita DSM 44233]
 gi|258558187|gb|ACV81129.1| cyanophycin synthetase [Nakamurella multipartita DSM 44233]
          Length = 914

 Score = 67.5 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 50/111 (45%), Gaps = 3/111 (2%)

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--QHLISPPYVIKPLKGGSSLGIIV-IK 145
           ++ DK  + +++++ G+PV  S +V R          I  P V+KPL G    G+ + ++
Sbjct: 233 IASDKELTNRLLAAAGLPVPASEVVRRADDAVRIARRIGYPVVVKPLDGNHGRGVAINLQ 292

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK 196
            + ++     ++   +    +L+E Y+ G +    V+G     + E     
Sbjct: 293 DEAAVRAAFDEAYDQSRRGYVLVESYIAGKDYRVLVIGGQMTAIAERVPAH 343


>gi|229006169|ref|ZP_04163855.1| Carbamoyl-phosphate synthase large chain [Bacillus mycoides
           Rock1-4]
 gi|228755010|gb|EEM04369.1| Carbamoyl-phosphate synthase large chain [Bacillus mycoides
           Rock1-4]
          Length = 1018

 Score = 67.5 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 41/260 (15%), Positives = 96/260 (36%), Gaps = 13/260 (5%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMR 95
             V  ++   +PD     L G  G +  V+     +L+   +    + + A   + D+  
Sbjct: 18  EFVSRIIRKERPDAILPTLGGQTGLNMAVELAKSGVLDECGVEILGTKLSAIEQAEDRDL 77

Query: 96  SKQVVSSCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153
            + ++     P  PS +++      +    I  P +++P       G  +   ++ +   
Sbjct: 78  FRTLMQELNEPTPPSEIIHTLDGAYEFVKEIGYPVIVRPAFTLGGTGGGICHNEKELIET 137

Query: 154 LLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212
           +      +   Q L+E+ + G  E+   VM D++ +   I V   +       ++  +  
Sbjct: 138 VTSGLKHSPVTQCLLEKSIAGCKEIEYEVMRDSNDNA--IVVCNMENIDPVGVHTGDSIV 195

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
                 +    Y+ ++  +    +A+G  G        DP S + + +E+N  P ++  S
Sbjct: 196 VAPSQTLSDREYQMLRNTSLRIIRALGIEGGCNVQLALDPYSFQYYVIEVN--PRVSRSS 253

Query: 273 IFPEMAAYAGYSFRELLLWM 292
                +   GY   +L   +
Sbjct: 254 --ALASKATGYPIAKLAAKI 271



 Score = 65.9 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 37/283 (13%), Positives = 100/283 (35%), Gaps = 39/283 (13%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ------ 69
           A+++AG++   I         D   S  L    L  +   +++     E  +VQ      
Sbjct: 526 AIKEAGYEAIIINNNPETVSTDFSISDKLYFEPLTIEDVMHIIDLEKPEGVIVQFGGQTA 585

Query: 70  ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHL 123
               A LE   +    + +     + D+ + +  ++  G+P             +     
Sbjct: 586 INLAAKLEEHGVKILGTSLEDLDRAEDRDKFEAALTQLGIPQPVGKTATTVEQAVAIAEE 645

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + ++ + + +   +  +   +    +LI++Y+ G E+    + 
Sbjct: 646 IGYPVLVRPSYVLGGRAMEIVYRQEELLHYMKNAVKVHADHPVLIDRYMVGKEIEVDAIS 705

Query: 184 DAS---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIG 239
           D     +      + ++  +S        +S  V P + +   + +++        + + 
Sbjct: 706 DGENVFIPGIMEHIERAGVHS-------GDSIGVYPPQSLSAKLKEQIIENTIALGRGLN 758

Query: 240 CRGISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277
             G+    F+      +V+ +E+N       P ++ ++  P  
Sbjct: 759 IVGLLNIQFVVFK--DEVYVIEVNPRASRTVPFLSKITGVPMA 799


>gi|26110266|gb|AAN82452.1|AE016767_212 Biotin carboxylase [Escherichia coli CFT073]
          Length = 462

 Score = 67.5 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 80/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         L  DK+ +   +   GVP  P    
Sbjct: 90  AIHPGYGFLSENANFAEQVERSGFIFIGPKAETIRLMGDKVSAIAAMKKAGVPCVPGSDG 149

Query: 112 -LVNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
            L +    +      I  P +IK   GG   G+ V++ D  +   +     ++ +    D
Sbjct: 150 PLGDDMDKNRAIAKRIGYPVIIKASGGGGGRGMRVVRGDAELAQSISMTRAEAKAAFSND 209

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+Y++    +   V+ D   +   +A           K          PA  I  +
Sbjct: 210 MVYMEKYLENPRHVEIQVLADGQGNAIYLAERDCSMQRRHQK-----VVEEAPAPGITPE 264

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + + +      A   IG RG    +FLF   + + +++E+N 
Sbjct: 265 LRRYIGERCAKACVDIGYRGAGTFEFLF--ENGEFYFIEMNT 304


>gi|28377471|ref|NP_784363.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Lactobacillus
           plantarum WCFS1]
 gi|28270303|emb|CAD63204.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Lactobacillus
           plantarum WCFS1]
          Length = 440

 Score = 67.5 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 74/220 (33%), Gaps = 19/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+    A+     I +         L  DK R+K       VPV     +
Sbjct: 77  AIHPGYGFLAENADFAAMCAECGIAWIGPQTEQIKLMGDKARAKDFARQQAVPVLAGQSL 136

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSWNHGDQ 165
                     +   I  P V+K   GG   GI V+     +         ++++    D 
Sbjct: 137 QGLAWPDIKHAAAKIGFPLVLKASYGGGGKGIRVLTNVHELHQQLRAARQEAAASFLNDA 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +EQ++     +   V+G  +     +         ++ K    +S  +    +     
Sbjct: 197 MYLEQFLTTARHIEVQVLGTGTKLFI-LGDRDCSLQLHKQKVLEESSASI----LTETQR 251

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +  L+         + +   ++LF     + +++E+N 
Sbjct: 252 RTLYDLSRQLLAGTHYQSLGTIEYLF--ADGQFYFMEMNT 289


>gi|88812985|ref|ZP_01128228.1| Carbamoyl-phosphate synthase, large subunit, glutamine-dependent
           [Nitrococcus mobilis Nb-231]
 gi|88789763|gb|EAR20887.1| Carbamoyl-phosphate synthase, large subunit, glutamine-dependent
           [Nitrococcus mobilis Nb-231]
          Length = 1073

 Score = 67.5 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 48/281 (17%), Positives = 100/281 (35%), Gaps = 41/281 (14%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D              R+V  V+A  +PD    
Sbjct: 29  SGAQACKALREEGYRVVLVNSNPATIMTDPQTADRVYIEPINWRTVASVIARERPDALLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      +L+   +    +   A   + D+   +  ++  G+    + +
Sbjct: 89  TMGGQTALNCALDLAKHGVLDEYRVEMIGARQAAIDKAEDREAFRTAMADIGLLTPRARI 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     +  Q  I  P +I+P       G  +    +     +      +  +++L+E+
Sbjct: 149 AHSREEALQVQAQIGFPTIIRPSFTLGGSGGGIAYNREEFVEIVECGLDLSPTNEVLLEE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIA----VPKSDFYSYELKYSSLNSTHVLPAK-IPLDIY 224
            V G  E    V+ D S +   I     V     ++        +S  V PA+ +    Y
Sbjct: 209 SVLGWKEYELEVVRDHSDNCIIICSIENVDSMGIHT-------GDSITVAPAQTLTDKEY 261

Query: 225 KEVQRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           + ++  A    + IG   G S   F  +P + ++  +E+N 
Sbjct: 262 QLMRDAAIAVLREIGVETGGSNVQFAVNPANGQMVVIEMNP 302



 Score = 59.8 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 87/221 (39%), Gaps = 14/221 (6%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--SILVNRFTMDSQHLISPPYV 129
           LE    P   +   +  L+ D+ R + ++S  G+   P  S +     +D    I  P V
Sbjct: 653 LEAYGAPIIGTSPESIDLAEDRERFQHLISQLGLQQPPNRSAVAVEQALDLARQIGYPLV 712

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTC-GVMGDASL 187
           ++P        + ++ +D  +   + ++   +    +L+++++ D +E+    V     +
Sbjct: 713 VRPSYVLGGRAMEIVYEDADLLQYMREAVKVSPEAPVLLDRFLDDAVEVDVDAVCDGHDV 772

Query: 188 DVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
            +  I         +    +     + L A I   + ++V+ LA      +G  G+  + 
Sbjct: 773 LIGGIMEHIEQAGVHSGDSACSLPAYTLSATIGERLREQVRLLAIK----LGVIGLMNTQ 828

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           F       +++ LE+N +   T     P +A   G +  ++
Sbjct: 829 FAI--KDDEIYLLEVNPRASRT----VPFVAKATGLALAKI 863


>gi|171743369|ref|ZP_02919176.1| hypothetical protein BIFDEN_02500 [Bifidobacterium dentium ATCC
           27678]
 gi|171278983|gb|EDT46644.1| hypothetical protein BIFDEN_02500 [Bifidobacterium dentium ATCC
           27678]
          Length = 1113

 Score = 67.5 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 44/288 (15%), Positives = 103/288 (35%), Gaps = 36/288 (12%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQIDVDRS---------------------VGLV 45
           G ++E + S   G      L + G +V  ++ + +                     +  +
Sbjct: 8   GQAAEFDYS---GTQACRVLREEGIRVILVNSNPATIMTDPEMADATYIEPISTPILEQI 64

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +A  +PD     L G    +  +      +L+  ++    + + A     D+   K+VV 
Sbjct: 65  IAKERPDALLPTLGGQTALNAAMALGEAGVLKKYDVELIGASLEAIDRGEDRELFKKVVE 124

Query: 102 SCGVPVCPSILVNRFTMDS--QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G     S + +              P V++P      LG  +   ++ +         
Sbjct: 125 EAGAESARSDIAHSIEEVDRIAEKFGYPLVVRPSFTMGGLGSGIAHDEEELHRIAGAGIH 184

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
           ++  D++LIE+ ++G  E    +M D   +V  +   ++      +   + +S  V P  
Sbjct: 185 YSPTDEVLIEEGIEGWKEYELELMRDKKDNVVVVCPIENVD---PVGVHTGDSITVAPVF 241

Query: 219 -IPLDIYKEVQRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
            +    Y++++ +     + +G   G     F   P + ++  +E+N 
Sbjct: 242 TLTDREYQKLRDIGIAIIRGVGVDTGGCNIQFAIHPDTGRIIVIEMNP 289



 Score = 51.7 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 33/233 (14%), Positives = 75/233 (32%), Gaps = 29/233 (12%)

Query: 67  LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTMDSQHLI 124
            + A L+   +P   +   +  L+ ++    +V+    +        L      ++ H I
Sbjct: 638 SLAARLKAAGVPILGTTPESIDLAENRELFGEVLKKADMNAPRYGTALSLEEAREAAHGI 697

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
             P +++P       G+ ++  D  +   + ++      D +     V G   +  ++  
Sbjct: 698 GYPVLVRPSYVLGGRGMEIVYDDAQLRKYVDRALREAQADTV-----VSGRLPSPLLIDK 752

Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK--------------IPLDIYKEVQRL 230
              D  EI V     +  E  Y      HV  A               +  D  + ++  
Sbjct: 753 FLQDAVEIDV--DALFDGEELYIGGIMEHVEEAGVHSGDAACTLPPSTLSDDQIRRLREG 810

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283
            +   +  G +G+    + F      ++ +E N +   T     P  +   G 
Sbjct: 811 TYAIAKGCGVQGLINVQYAFMA--NTLYVIEANPRASRT----VPFASKATGV 857


>gi|157148834|ref|YP_001456153.1| acetyl-CoA carboxylase biotin carboxylase subunit [Citrobacter
           koseri ATCC BAA-895]
 gi|157086039|gb|ABV15717.1| hypothetical protein CKO_04667 [Citrobacter koseri ATCC BAA-895]
          Length = 449

 Score = 67.5 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 80/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         L  DK+ +   +   GVP  P    
Sbjct: 77  AIHPGYGFLSENANFAEQVERSGFIFIGPKADTIRLMGDKVSAISAMKQAGVPCVPGSDG 136

Query: 112 -LVNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
            L +    +      I  P +IK   GG   G+ V++ D  +   +     ++ +    D
Sbjct: 137 PLGDDMDKNRAIAKRIGYPVIIKASGGGGGRGMRVVRGDAELAQSISMTKAEAKAAFSND 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+Y++    +   V+ D   +   +A           K          PA  I  +
Sbjct: 197 MVYMEKYLENPRHIEIQVLADGQGNAIYLAERDCSMQRRHQK-----VVEEAPAPGITPE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + + +      A   IG RG    +FLF   + + +++E+N 
Sbjct: 252 LRRYIGERCSKACVDIGYRGAGTFEFLF--ENGEFYFIEMNT 291


>gi|323691569|ref|ZP_08105833.1| carbamoyl-phosphate synthase large subunit [Clostridium symbiosum
           WAL-14673]
 gi|323504362|gb|EGB20160.1| carbamoyl-phosphate synthase large subunit [Clostridium symbiosum
           WAL-14673]
          Length = 1087

 Score = 67.5 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 52/286 (18%), Positives = 101/286 (35%), Gaps = 33/286 (11%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQIDVD---------------------RSVGLV 45
           G ++E + +   G     AL++ G +V  ++ +                       V  +
Sbjct: 11  GQAAEFDYA---GTQACRALKEEGLEVVLVNSNPATIMTDSAIADQVYIEPLTLEVVKRI 67

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   KPD   + L G  G    ++      LE   +    +       + D+   K  + 
Sbjct: 68  IDKEKPDSILSTLGGQTGLTLSMELAKEGFLESRGVTLLGASPETIDKAEDRQCFKDTME 127

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G PV PS +V      M     I  P +++P       G  + K  + +         
Sbjct: 128 EIGEPVIPSEVVTTVDAAMAFAEKIGFPVIVRPAFTLGGTGGGIAKTRRELDEIATAGIR 187

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   Q+L+E+ + G  E+   VM D+  +  EI V   + +     ++  +        
Sbjct: 188 LSPIHQILVEKCIAGWKEIEFEVMRDSVGN--EITVCSMENFDPVGIHTGDSIVIAPAVT 245

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +    Y+ ++  A    QA+G  G     F  +P S +   +E+N 
Sbjct: 246 LADKEYQMLRSAALNIIQAMGIEGGCNCQFALNPESFEYAVIEVNP 291



 Score = 63.6 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 28/223 (12%), Positives = 81/223 (36%), Gaps = 19/223 (8%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVC--PSILVNRFTMDSQHLISPPYVIKPL 133
            +P   +   +  ++ D+ R   ++    +      ++      + + + +  P +++P 
Sbjct: 638 GVPVLGTPAESIDMAEDRGRFNSLLKKLNMKQPSGDTVYTEDEAIATANRLGYPVLVRPS 697

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS---LDVT 190
                  +I+  +D  I   +         + +LI++Y+ G EL    + D     +   
Sbjct: 698 YVLGGQNMIIAYQDADIHEYMKIILEHKIENAILIDKYLMGTELEVDAICDGEDVLIPGI 757

Query: 191 EIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
              + ++  +S        +S  V PA  +       +   +     ++G +G+    ++
Sbjct: 758 MEHIERAGVHS-------GDSIAVYPAFMLTESQKDRIVDYSIRLALSLGTKGLINIQYV 810

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
               +  ++ +E+N +   T     P ++   G    +L   +
Sbjct: 811 LHEDT--IYIIEVNPRSSRT----VPYISKVTGVLMVDLATRI 847


>gi|317493341|ref|ZP_07951763.1| carbamoyl-phosphate synthase [Enterobacteriaceae bacterium
           9_2_54FAA]
 gi|316918734|gb|EFV40071.1| carbamoyl-phosphate synthase [Enterobacteriaceae bacterium
           9_2_54FAA]
          Length = 1074

 Score = 67.5 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 42/278 (15%), Positives = 96/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D +              V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +    Q +L    +    +   A   + D+ R    +   G+    S +
Sbjct: 89  TMGGQTALNCALELERQGVLAEFGVTMIGATADAIDKAEDRRRFDIAMKKIGLDTARSGI 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     +     +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHTMEEALAVAADVGFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTKELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + +   +   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIEN----FDAMGIHTGDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RNASMAVLREIGVETGGSNVQFAVNPKNGRLIVIEMNP 302



 Score = 64.8 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 33/197 (16%), Positives = 77/197 (39%), Gaps = 10/197 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           LE   +P   +   A   + D+ R +Q V   G+    +  V+     ++    I  P V
Sbjct: 654 LEAAGVPVIGTSPDAIDRAEDRERFQQAVVRLGLKQPANATVSTIEQAIEKGAAIGYPLV 713

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  +  +      + S ++   +L++ ++ D +E+    + D    
Sbjct: 714 VRPSYVLGGRAMEIVYDEIDLRRYFQNAVSVSNDAPVLLDHFLDDAVEVDVDAICDGERV 773

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           +    +   +    +    S +S   LPA  +  +I   +++ A      +G RG+    
Sbjct: 774 LIGGIMEHIE----QAGVHSGDSACSLPAYTLSQEIQDVMRQQAEKLAMELGVRGLMNVQ 829

Query: 248 FLFDPLSRKVFWLEINV 264
           F       +V+ +E+N 
Sbjct: 830 FAV--KDNEVYLIEVNP 844


>gi|294637769|ref|ZP_06716043.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Edwardsiella
           tarda ATCC 23685]
 gi|291089061|gb|EFE21622.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Edwardsiella
           tarda ATCC 23685]
          Length = 449

 Score = 67.5 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 84/222 (37%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         L  DK+ +   +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAEQVERSGFIFIGPKAETIRLMGDKVSAISAMKKAGVPCVPGSDG 136

Query: 112 LVNRFTMDSQHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
            ++     ++ +   I  P +IK   GG   G+ V++ D+ +   +     ++ +  + D
Sbjct: 137 PLDDDMEKNRAIAKRIGYPVIIKASGGGGGRGMRVVRGDKELAQSILMTKAEAKAAFNND 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+Y++    +   V+ D   +   +A           K          PA  I  +
Sbjct: 197 MVYMEKYLENPRHIEIQVLADGQGNAIYLAERDCSMQRRHQK-----VVEEAPAPGITPE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + + +      A   IG RG    +FLF   + + +++E+N 
Sbjct: 252 LRRYIGERCAKACVDIGYRGAGTFEFLF--ENGEFYFIEMNT 291


>gi|297192986|ref|ZP_06910384.1| acetyl-CoA carboxylase [Streptomyces pristinaespiralis ATCC 25486]
 gi|197723392|gb|EDY67300.1| acetyl-CoA carboxylase [Streptomyces pristinaespiralis ATCC 25486]
          Length = 450

 Score = 67.5 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 35/219 (15%), Positives = 75/219 (34%), Gaps = 16/219 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H  +G   ED     I     I +            DK  +++++++ G+P+ P  + 
Sbjct: 77  AIHPGYGFLSEDPYFAEICADDGITFIGPPADVMENVGDKATARRLMTAAGLPLLPGTVE 136

Query: 113 ---VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGDQ 165
                   +     I  P +IK + GG   GI V+   + +          + +      
Sbjct: 137 PVDSVDAAVAVAAEIGYPVIIKAVAGGGGRGITVVHDPKDLRDAYTATRASAQAVFKNSA 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+Y+     +   V+ D       +            K           A +  ++ 
Sbjct: 197 VYMERYLRKTRHIEVQVVCDDFGGAVHLGERDCSVQRRHQK----LIEESPSAMVSPELR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
             +   A    +A+G RG    +FL +      +++E+N
Sbjct: 253 HRLGEAAVAGARAVGYRGAGTVEFLLEAGDEAFWFMEMN 291


>gi|326563560|gb|EGE13819.1| carbamoyl-phosphate synthase, large subunit [Moraxella catarrhalis
           12P80B1]
          Length = 1078

 Score = 67.5 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 31/196 (15%), Positives = 73/196 (37%), Gaps = 8/196 (4%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYV 129
           LE   +P   +   A   + D+ R  Q+++   +    + +V            +  P V
Sbjct: 655 LEQAGVPIIGTSPDAIDRAEDRERFLQMINKLNLRQPSNSIVKSSEEGIREAAKVGYPLV 714

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  +  +   L  +   +H   +L++ ++ D IE+    + D    
Sbjct: 715 VRPSYVLGGRAMEIVYNEDELKRYLRDAVQASHEAPVLLDHFLDDAIEVDVDCVSDGKEV 774

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           V    +   +       +S  ++  + P  +  DI  +++R      + +G  G+    F
Sbjct: 775 VIGGIMQHIEQAGV---HSGDSACSIPPYSLSDDIQDDMRRQTVAMAKELGVVGLMNVQF 831

Query: 249 LFDPLSRKVFWLEINV 264
                   V+ LE+N 
Sbjct: 832 AI--KGETVYVLEVNP 845



 Score = 58.2 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 94/278 (33%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G++V  +         D              ++V  ++A  +PD    
Sbjct: 29  SGAQACKALKEEGYRVILVNSNPATIMTDPSMADATYIEPITWQTVEQIIAKERPDAILP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      +L         +   A   + D+    + +   G+    + +
Sbjct: 89  TMGGQTALNCALDLDKHGVLAKYGCELIGATKEAIEKAEDRELFDKAMKKIGLECPKAEI 148

Query: 113 VNRFTMDS--QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                     Q  +  P +I+P       G  +    +       +    +   QLLI++
Sbjct: 149 AQSMDDAFAIQAKVGFPCIIRPSFTMGGSGGGIAYNREEFIEICERGFDLSPTHQLLIDE 208

Query: 171 YVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D   + +   ++   D           +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKKDNCIIVCSIENFDPMGVHT----GDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RNASIAVLREIGVETGGSNVQFGINPKTGRMVVIEMNP 302


>gi|294651181|ref|ZP_06728513.1| carbamoyl-phosphate synthase large subunit [Acinetobacter
           haemolyticus ATCC 19194]
 gi|292822934|gb|EFF81805.1| carbamoyl-phosphate synthase large subunit [Acinetobacter
           haemolyticus ATCC 19194]
          Length = 1077

 Score = 67.5 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 27/196 (13%), Positives = 74/196 (37%), Gaps = 8/196 (4%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYV 129
           LE    P   +   A   + D+ R +Q++    +    + +V            +  P V
Sbjct: 653 LEEAGTPIIGTSPDAIDRAEDRERFQQMIQRLQLRQPNNSIVKSAEEGISEAAKVGYPLV 712

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  ++ +   L ++   ++   +L+++++ D  E+    + D    
Sbjct: 713 VRPSYVLGGRAMEIVYNEEELKRYLREAVQASNEAPVLLDRFLDDATEVDVDCVSDGKDV 772

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           V    +   +       +S  ++  + P  +  ++  E++R      + +G  G+    F
Sbjct: 773 VIGGIMQHIEQAGI---HSGDSACSIPPYSLSQEVQDEMRRQTVAMAKELGVVGLMNVQF 829

Query: 249 LFDPLSRKVFWLEINV 264
                   ++ LE+N 
Sbjct: 830 AV--KGNDIYVLEVNP 843



 Score = 65.1 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 44/278 (15%), Positives = 94/278 (33%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D              ++V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPSMADATYIEPITWQTVAQIIEKERPDAVLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      +LE   +    +   A   + D+      +   G+    + +
Sbjct: 89  TMGGQTALNCALALDEHGVLEKYNVELIGASKEAIEKAEDRKLFDIAMRKIGLECPRADV 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  ++ Q     P +I+P       G  +    +       +    +   QLLI++
Sbjct: 149 AESMEHALEIQSRFGFPVIIRPSFTMGGSGGGIAYNKEEFIEICERGFDLSPTKQLLIDE 208

Query: 171 YVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + + +   A+   D           +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCAIENFDPMGVHT----GDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P   ++  +E+N 
Sbjct: 265 RNASVAVLREIGVETGGSNVQFGINPKDGRMVVIEMNP 302


>gi|269928427|ref|YP_003320748.1| carbamoyl-phosphate synthase L chain ATP- binding protein
           [Sphaerobacter thermophilus DSM 20745]
 gi|269787784|gb|ACZ39926.1| Carbamoyl-phosphate synthase L chain ATP- binding protein
           [Sphaerobacter thermophilus DSM 20745]
          Length = 647

 Score = 67.5 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/198 (15%), Positives = 68/198 (34%), Gaps = 15/198 (7%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVC----PSILVNRFTMDSQHLISPPYVIK 131
            I +            DK+ +++     GVPV     P          +   I  P ++K
Sbjct: 96  GIRFLGPSPETLERCGDKVETRRAAVEAGVPVLSASEPLGDAPEEWCTAAKAIGYPVLVK 155

Query: 132 PLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGDQLLIEQYVD-GIELTCGVMGDAS 186
              GG    +  +   + +   +     ++ +   G  L +E+++D    +   V GD  
Sbjct: 156 AALGGGGTSLRRVDDPKELTEAVASARREAEAAGAGPVLYLERFLDSARHIEVQVAGDG- 214

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRS 246
              T          S + ++  +         +  +  + +   A    +A+G   ++  
Sbjct: 215 ---TRAIAIGDRECSLQRRHQKV-IEEAPAPNLSDEARRRLHTYAIAVAEAVGLVSLATI 270

Query: 247 DFLFDPLSRKVFWLEINV 264
           +FL+      + +LE+N 
Sbjct: 271 EFLY-GADGTIAFLEVNP 287


>gi|226951539|ref|ZP_03822003.1| carbamoyl-phosphate synthase, large subunit [Acinetobacter sp. ATCC
           27244]
 gi|226837731|gb|EEH70114.1| carbamoyl-phosphate synthase, large subunit [Acinetobacter sp. ATCC
           27244]
          Length = 1077

 Score = 67.5 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 27/196 (13%), Positives = 74/196 (37%), Gaps = 8/196 (4%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYV 129
           LE    P   +   A   + D+ R +Q++    +    + +V            +  P V
Sbjct: 653 LEEAGTPIIGTSPDAIDRAEDRERFQQMIQRLQLRQPNNSIVKSAEEGISEAAKVGYPLV 712

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  ++ +   L ++   ++   +L+++++ D  E+    + D    
Sbjct: 713 VRPSYVLGGRAMEIVYNEEELKRYLREAVQASNEAPVLLDRFLDDATEVDVDCVSDGKDV 772

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           V    +   +       +S  ++  + P  +  ++  E++R      + +G  G+    F
Sbjct: 773 VIGGIMQHIEQAGI---HSGDSACSIPPYSLSQEVQDEMRRQTVAMAKELGVVGLMNVQF 829

Query: 249 LFDPLSRKVFWLEINV 264
                   ++ LE+N 
Sbjct: 830 AV--KGNDIYVLEVNP 843



 Score = 65.1 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 44/278 (15%), Positives = 94/278 (33%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D              ++V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPSMADATYIEPITWQTVAQIIEKERPDAVLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      +LE   +    +   A   + D+      +   G+    + +
Sbjct: 89  TMGGQTALNCALALDEHGVLEKYNVELIGASKEAIEKAEDRKLFDIAMRKIGLECPRADV 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  ++ Q     P +I+P       G  +    +       +    +   QLLI++
Sbjct: 149 AESMEHALEIQSRFGFPVIIRPSFTMGGSGGGIAYNKEEFIEICERGFDLSPTKQLLIDE 208

Query: 171 YVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + + +   A+   D           +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCAIENFDPMGVHT----GDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P   ++  +E+N 
Sbjct: 265 RNASVAVLREIGVETGGSNVQFGINPKDGRMVVIEMNP 302


>gi|225175803|ref|ZP_03729796.1| Glutathione synthase [Dethiobacter alkaliphilus AHT 1]
 gi|225168727|gb|EEG77528.1| Glutathione synthase [Dethiobacter alkaliphilus AHT 1]
          Length = 944

 Score = 67.5 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 57/118 (48%), Gaps = 6/118 (5%)

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIV- 143
            AL+  K  +K+ + S G+PV   ++  ++    +       P V+KP+ G    GI V 
Sbjct: 224 RALTDHKHLTKEFLVSKGLPVPKGMIFTKWQDAKEYFRTCGYPVVVKPVSGSYGQGITVD 283

Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYS 201
           ++ + S+ +  L +    + +Q+++E+ + GI++   V+G  +     + VP +    
Sbjct: 284 VRTESSMEVAWLYAK--KYHEQIVVEELIKGIDVRVLVIGKTA-KAALMRVPANVIGD 338


>gi|161621457|ref|NP_085768.2| argininosuccinate lyase [Mesorhizobium loti MAFF303099]
          Length = 905

 Score = 67.5 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 40/216 (18%), Positives = 79/216 (36%), Gaps = 21/216 (9%)

Query: 88  ALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145
           A   +K +    +    +P+  + L    R   +     + P V+KP+ G  S G+ +  
Sbjct: 104 ATCRNKWKQATELQRHSIPIPETWLATSIRDVENILAHGTLPVVVKPVSGSGSSGVRLCD 163

Query: 146 KDQSIPLDLLQSSSWNHG------DQLLIEQYVDGIELTCGVMG-DASLDVTEIAVPKSD 198
              +       + S            +LI+QYV+G E +  ++  D  L    I      
Sbjct: 164 SAAAAIAGFNSAKSVLQDQVDLPSPDILIQQYVEGKEYSAEIIAYDGKLHCLGILAKHKG 223

Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR-GISRSDFLFDPLSRKV 257
                     +   H  PA +     +E+   A  A  A+G   G +  +F+        
Sbjct: 224 -----PPPCFVEVGHDFPAPLLEPSLQELASFASGAVSALGLEFGPAHVEFVITESG--P 276

Query: 258 FWLEINVQPGMTPVSIFPEMAAYA-GYSFRELLLWM 292
             +E+N +       + P M ++A G S  ++++ +
Sbjct: 277 VIIEVNPR---LAGGMIPVMLSHALGTSILDMVIRL 309


>gi|119478512|ref|ZP_01618474.1| carbamoyl-phosphate synthase large subunit [marine gamma
           proteobacterium HTCC2143]
 gi|119448493|gb|EAW29741.1| carbamoyl-phosphate synthase large subunit [marine gamma
           proteobacterium HTCC2143]
          Length = 1075

 Score = 67.5 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 24/196 (12%), Positives = 74/196 (37%), Gaps = 8/196 (4%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           LE   +P   +   A   + D+ R + ++   G+   P+  V      + +   I  P V
Sbjct: 653 LEAAGVPIIGTTPDAIDRAEDRERFQHMIQKLGLKQPPNTTVRSTDEAIAAAASIGYPLV 712

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLD 188
           ++P        + ++  +  +   + ++   ++   +L++ +++  +E+    + D    
Sbjct: 713 VRPSYVLGGRAMEIVYDEDELLRYMKEAVQASNESPVLLDHFLNAAVEMDVDAVSDGKDV 772

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           V    +   +       +S  ++  + P  +      +++    +    +G  G+   + 
Sbjct: 773 VIGAIMQHIEQAGI---HSGDSACSLPPYSLSAAQQDKMREQVKIMAIELGVCGL--MNV 827

Query: 249 LFDPLSRKVFWLEINV 264
                  ++F +E+N 
Sbjct: 828 QLAEQDGEIFIIEVNP 843



 Score = 56.7 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 44/278 (15%), Positives = 93/278 (33%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G +V  +              D         ++V  ++   KPD    
Sbjct: 29  SGAQACKALREEGIRVILVNSNPATIMTDPAMADATYIEPVEWQTVARIIEVEKPDALLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      +LE   +    +   A   + D+    + +   G+    S +
Sbjct: 89  TMGGQTALNCALDLDRHGVLEKHGVEMIGASKEAIDKAEDRDLFDKAMKRIGLECPRSAI 148

Query: 113 VNRFTMDS--QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +        Q  +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHSMEEAFQVQSQLGFPCIIRPSFTMGGSGGGIAYNKEEFAEICERGLDLSPTSELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + + +   ++   D           +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDPMGVHT----GDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F   P + +   +E+N 
Sbjct: 265 RNASLAVLREIGVETGGSNVQFGQCPDTGRFVIIEMNP 302


>gi|121715398|ref|XP_001275308.1| carbamoyl-phosphate synthase, large subunit [Aspergillus clavatus
           NRRL 1]
 gi|119403465|gb|EAW13882.1| carbamoyl-phosphate synthase, large subunit [Aspergillus clavatus
           NRRL 1]
          Length = 1175

 Score = 67.5 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 57/291 (19%), Positives = 106/291 (36%), Gaps = 41/291 (14%)

Query: 6   GGIS----SEREVSLSSGKACASALEDAGF--------------------KVSQIDVDRS 41
           GG+S     E + S   G     AL++AG                     +V  + V   
Sbjct: 108 GGLSIGQAGEFDYS---GSQALKALKEAGVTSVLINPNIATIQTDHKLADEVYYLPVTPE 164

Query: 42  -VGLVLAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRS 96
            V  V+   +PD  F    G    +  VQ     I E   +    + I     S D+   
Sbjct: 165 YVTHVIERERPDGIFLSFGGQTALNLGVQMNRMGIFERYGVKVLGTSIRTLETSEDRDLF 224

Query: 97  KQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154
            + ++   +P+  SI V+     + +   +  P +++       LG    +  + +    
Sbjct: 225 AKALNEINIPIAESIAVSTLDEALKAAEEVGYPIIVRSAYALGGLGSGFAENPEELK--N 282

Query: 155 LQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTH 213
           L S S     Q+L+E+ + G  E+   V+ DAS +   I V   + +   L   + +S  
Sbjct: 283 LASRSLTLAPQILVEKSLKGWKEVEYEVVRDASNN--CITVCNMENFD-PLGIHTGDSIV 339

Query: 214 VLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
           V P++ +  + Y  ++  A    + +G  G     +   P       +E+N
Sbjct: 340 VAPSQTLSDEEYHMLRTAAIKIVRHLGVVGECNVQYALQPDGLDYRVIEVN 390



 Score = 54.7 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 27/176 (15%), Positives = 60/176 (34%), Gaps = 12/176 (6%)

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--FTMDSQHLISPPYVI 130
           E        +       + D+ +  Q++ S GV       +            +  P ++
Sbjct: 738 ETGGAHVLGTDPQDIDKAEDRHKFSQILDSIGVDQPAWKELTSVSEAERFAETVGYPVLV 797

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL----TCGVMGDAS 186
           +P    S   + VI     +   LL +S+ +    ++I ++++G +          G   
Sbjct: 798 RPSYVLSGAAMSVIYGVDELKEKLLNASAVSPDHPVVITKFIEGAQEIDIDAVAANGKLL 857

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
           L      V  +  +S +       +  + PA +  D+   V+ +A    +A    G
Sbjct: 858 LHAVSEHVEPAGVHSGDA------TLVLPPASLEQDVMDRVKEIAEKVAKAWNITG 907


>gi|53725500|ref|YP_103516.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia mallei
           ATCC 23344]
 gi|67643788|ref|ZP_00442531.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia mallei
           GB8 horse 4]
 gi|121599959|ref|YP_992375.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia mallei
           SAVP1]
 gi|124386476|ref|YP_001026822.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia mallei
           NCTC 10229]
 gi|126448913|ref|YP_001079893.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia mallei
           NCTC 10247]
 gi|167004412|ref|ZP_02270170.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia mallei
           PRL-20]
 gi|254175712|ref|ZP_04882372.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia mallei
           ATCC 10399]
 gi|254202200|ref|ZP_04908563.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia mallei
           FMH]
 gi|254207527|ref|ZP_04913877.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia mallei
           JHU]
 gi|254298447|ref|ZP_04965899.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia
           pseudomallei 406e]
 gi|254359943|ref|ZP_04976213.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia mallei
           2002721280]
 gi|81823967|sp|Q62IF4|PURT_BURMA RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|171769275|sp|A1V2C2|PURT_BURMS RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|171769822|sp|A2S4F3|PURT_BURM9 RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|172044050|sp|A3MI07|PURT_BURM7 RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|52428923|gb|AAU49516.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia mallei
           ATCC 23344]
 gi|121228769|gb|ABM51287.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia mallei
           SAVP1]
 gi|124294496|gb|ABN03765.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia mallei
           NCTC 10229]
 gi|126241783|gb|ABO04876.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia mallei
           NCTC 10247]
 gi|147746447|gb|EDK53524.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia mallei
           FMH]
 gi|147751421|gb|EDK58488.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia mallei
           JHU]
 gi|148029183|gb|EDK87088.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia mallei
           2002721280]
 gi|157808222|gb|EDO85392.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia
           pseudomallei 406e]
 gi|160696756|gb|EDP86726.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia mallei
           ATCC 10399]
 gi|238525224|gb|EEP88652.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia mallei
           GB8 horse 4]
 gi|243060268|gb|EES42454.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia mallei
           PRL-20]
          Length = 404

 Score = 67.5 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 48/277 (17%), Positives = 92/277 (33%), Gaps = 38/277 (13%)

Query: 19  GKACASALEDAGFKVSQID----------------VDRSVGLVLAHL----KPDLAFNVL 58
           GK    AL+  G +V  +D                +D +    L  L    +P L    +
Sbjct: 27  GKEVIIALQRLGVEVIAVDRYPNAPGHQVAHRAHVIDMTDPDALRALVDAERPHLVVPEI 86

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKM-RSKQVVSSCGVPVCPSILVNRFT 117
                 D L  A +E   +        A+ L+M++    +      G+P  P      F 
Sbjct: 87  EAI-ATDAL--AAIEAAGVCEVIPTARATQLTMNREGIRRLAAEELGLPTSPYAFAQSFD 143

Query: 118 MDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH--GDQLLIEQYV- 172
             +  +  I  P V+KP+   S  G  V++ +  I      + +       ++++E ++ 
Sbjct: 144 EFAAAVARIGFPCVVKPVMSSSGKGQSVLRSEADIEPAWRYAMAGGRVNHGRVIVEGFIR 203

Query: 173 ---DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
              +  +LT   +  AS                   Y         P  +     +  + 
Sbjct: 204 FDYEITQLTVRAIDPASGQTRTSFCAPIGHLQVAGDY----VESWQPQPMSAKALERSRD 259

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
           +A     A+G RGI   +         V++ E++ +P
Sbjct: 260 IAHRVTSALGGRGIFGVELFVR--GDDVWFSEVSPRP 294


>gi|321470897|gb|EFX81871.1| hypothetical protein DAPPUDRAFT_302840 [Daphnia pulex]
          Length = 712

 Score = 67.5 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 76/221 (34%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H  +G   E+     +     I +      A      K  SK ++S+ GVPV      
Sbjct: 115 AIHPGYGFLSENVEFAELCSKEGIIFIGPPASAIRDMGIKSTSKHIMSAAGVPVIHGYHG 174

Query: 113 ---VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
               +         I  P +IK ++GG   G+ +          L  +            
Sbjct: 175 VDQTDERLRHEAEKIGFPLMIKAVRGGGGKGMRIALTPSEFETQLESAKREAQKSFGDQV 234

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDI 223
           +L+E+YV+    +   V GD   +   +           ++          P   I  + 
Sbjct: 235 MLLERYVERPRHVEVQVFGDKYDNYVYL-----FERDCSVQRRHQKIIEEAPGPGISSET 289

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            K++   A  A +A+G  G    +F+ DP     F++E+N 
Sbjct: 290 RKQLGEAAVRAARAVGYVGAGTVEFIMDPQQN-FFFMEMNT 329


>gi|304396989|ref|ZP_07378869.1| acetyl-CoA carboxylase, biotin carboxylase [Pantoea sp. aB]
 gi|304355785|gb|EFM20152.1| acetyl-CoA carboxylase, biotin carboxylase [Pantoea sp. aB]
          Length = 449

 Score = 67.5 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 77/221 (34%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         L  DK+ +   +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAEQVERSGFIFIGPKADTIRLMGDKVSAINAMKKAGVPTVPGSDG 136

Query: 112 -LVNRFTMD--SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
            L +    +      I  P +IK   GG   G+ V++ D+ +   +     ++ +    D
Sbjct: 137 SLTDDMDKNRAFAKRIGYPVIIKASGGGGGRGMRVVRSDKDLEQSINMTKAEAKAAFSND 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            + +E+Y++    +   V+ D   +   +            K             I  + 
Sbjct: 197 MVYMEKYLENPRHIEIQVLADGQGNAIYLGERDCSMQRRHQK----VVEEAPGPGITEEQ 252

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +      A   IG RG    +FL+   + + +++E+N 
Sbjct: 253 RRFIGNRCAKACIEIGYRGAGTFEFLY--ENGEFYFIEMNT 291


>gi|167718729|ref|ZP_02401965.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia
           pseudomallei DM98]
          Length = 390

 Score = 67.5 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 48/277 (17%), Positives = 92/277 (33%), Gaps = 38/277 (13%)

Query: 19  GKACASALEDAGFKVSQID----------------VDRSVGLVLAHL----KPDLAFNVL 58
           GK    AL+  G +V  +D                +D +    L  L    +P L    +
Sbjct: 27  GKEVIIALQRLGVEVIAVDRYPNAPGHQVAHRAHVIDMTDPDALRALVDAERPHLVVPEI 86

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKM-RSKQVVSSCGVPVCPSILVNRFT 117
                 D L  A +E   +        A+ L+M++    +      G+P  P      F 
Sbjct: 87  EAI-ATDAL--AAIEAAGVCEVIPTARATQLTMNREGIRRLAAEELGLPTSPYAFAQSFD 143

Query: 118 MDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH--GDQLLIEQYV- 172
             +  +  I  P V+KP+   S  G  V++ +  I      + +       ++++E ++ 
Sbjct: 144 EFAAAVARIGFPCVVKPVMSSSGKGQSVLRSEADIEPAWRYAMAGGRVNHGRVIVEGFIR 203

Query: 173 ---DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
              +  +LT   +  AS                   Y         P  +     +  + 
Sbjct: 204 FDYEITQLTVRAIDPASGQTRTSFCAPIGHLQVAGDY----VESWQPQPMSAKALERSRD 259

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
           +A     A+G RGI   +         V++ E++ +P
Sbjct: 260 IAHRVTSALGGRGIFGVELFVR--GDDVWFSEVSPRP 294


>gi|121609372|ref|YP_997179.1| carbamoyl-phosphate synthase L chain, ATP-binding
           [Verminephrobacter eiseniae EF01-2]
 gi|121554012|gb|ABM58161.1| Carbamoyl-phosphate synthase L chain, ATP-binding
           [Verminephrobacter eiseniae EF01-2]
          Length = 675

 Score = 67.5 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 37/223 (16%), Positives = 79/223 (35%), Gaps = 23/223 (10%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H  +G   E+G   A +    + +      A     +K  +K+++ + G+P  P    
Sbjct: 94  AIHPGYGFLAENGDFAAAVTGAGLVFVGPPAEAIRAMGNKAEAKRLMRAAGMPCVPGYQG 153

Query: 113 VNRFT---MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS-----SSWNHGD 164
           +++       +   I  P ++K   GG   G+ ++     +   L  +     +++   +
Sbjct: 154 LDQGDPALQAAASGIGFPVMVKAAAGGGGRGMRLVHGSSDLAAALASARSEALAAFGSDE 213

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP---L 221
            +L    +    +   V  D    V  +            K        +  A  P    
Sbjct: 214 LILERALLAPRHIEIQVFADTHGHVIHLGERDCSVQRRHQK-------LIEEAPSPAVGP 266

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           ++   + + A  A  AIG  G    +FL D  S   +++E+N 
Sbjct: 267 ELRARMGKAAVDAANAIGYVGAGTMEFLLD-RSGAFYFMEMNT 308


>gi|304385498|ref|ZP_07367843.1| acetyl-CoA carboxylase, biotin carboxylase [Pediococcus
           acidilactici DSM 20284]
 gi|304328705|gb|EFL95926.1| acetyl-CoA carboxylase, biotin carboxylase [Pediococcus
           acidilactici DSM 20284]
          Length = 431

 Score = 67.5 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 37/219 (16%), Positives = 75/219 (34%), Gaps = 19/219 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   ED L   ++    + +            DK RS+++    GV   P    
Sbjct: 77  AIHPGYGFLSEDPLFATMVAECGLTWIGPSPDQIQRYADKERSRELAQKRGVLTIPGSGL 136

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS-----SSWNHGDQ 165
           I  +R    +   +  P ++K   GG   GI V   +Q +   +        +S+     
Sbjct: 137 ITDDRQIKPAAEKLGFPVLLKASFGGGGKGIRVAHDEQELAQIIAVVRQESGASFGSSPL 196

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
            L     +   +   V+G       +I +      S +L           PA + ++  +
Sbjct: 197 YLERDLQNARHIEVQVLGLNE----QIIILGDRNCSIQL--HRQKVVEESPANLTIEQRE 250

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +         G   +   +FL   +  + ++LE+N 
Sbjct: 251 RLYQAVHRLLDQSGYESLGTVEFL--QVGEEFYFLEMNT 287


>gi|167836214|ref|ZP_02463097.1| carbamoyl phosphate synthase large subunit [Burkholderia
           thailandensis MSMB43]
          Length = 1084

 Score = 67.5 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 26/203 (12%), Positives = 73/203 (35%), Gaps = 13/203 (6%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQHLISPPYV 129
           LE   +P   +       + D+ R ++++   G+   P+         +     I  P V
Sbjct: 655 LEAHGVPIIGTSPDMIDAAEDRERFQKLLQDLGLRQPPNRTARAEDEALALADEIGYPLV 714

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++ + + +   + ++   ++   +L+++++ D IE     + D    
Sbjct: 715 VRPSYVLGGRAMEIVHEPRDLERYMREAVKVSNDSPVLLDRFLNDAIECDVDCICDGDAV 774

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                +   +       +S  ++  + P  +  +   E++R      +A+   G+    F
Sbjct: 775 FIGGVMEHIEQAGV---HSGDSACSLPPYSLSKETVAELKRQTAAMAKALNVVGLMNVQF 831

Query: 249 LFD-------PLSRKVFWLEINV 264
                          ++ LE+N 
Sbjct: 832 AIQQVPQSDGSKEDVIYVLEVNP 854



 Score = 64.0 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 49/285 (17%), Positives = 97/285 (34%), Gaps = 42/285 (14%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +              DV          V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYKVILVNSNPATIMTDPNTADVTYIEPITWEVVERIIAKERPDAILP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      +L+   +    +   A   + D+ + K  ++  G+    S +
Sbjct: 89  TMGGQTALNCALDLFHHGVLDKYGVELIGASPEAIDKAEDRQKFKDAMTKIGLGSAKSGI 148

Query: 113 VNRFT---------MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
            +            M +      P VI+P       G  +    +       +    +  
Sbjct: 149 AHSMEEANKVHGEIMAATGGSGYPVVIRPSFTLGGSGGGIAYNREEFEEICKRGLDLSPT 208

Query: 164 DQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPAK-IP 220
            +LLIE+ + G  E    V+ D + +   I   ++ D           +S  V PA+ + 
Sbjct: 209 RELLIEESLLGWKEYEMEVVRDRADNCIIICSIENLDPMGVHT----GDSITVAPAQTLT 264

Query: 221 LDIYKEVQRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
              Y+ ++  +    + IG   G S   F  +P   ++  +E+N 
Sbjct: 265 DKEYQILRNASLAVLREIGVDTGGSNVQFSINPKDGRMVVIEMNP 309


>gi|269140487|ref|YP_003297188.1| acetyl-CoA carboxylase biotin carboxylase subunit [Edwardsiella
           tarda EIB202]
 gi|267986148|gb|ACY85977.1| acetyl-CoA carboxylase biotin carboxylase subunit [Edwardsiella
           tarda EIB202]
 gi|304560278|gb|ADM42942.1| Biotin carboxylase of acetyl-CoA carboxylase [Edwardsiella tarda
           FL6-60]
          Length = 449

 Score = 67.5 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 81/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         L  DK+ +   +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAEQVERSGFIFIGPKAETIRLMGDKVSAISAMKKAGVPCVPGSDG 136

Query: 112 LVNRF---TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
            ++            I  P +IK   GG   G+ V++ D+ +   +     ++ +  + D
Sbjct: 137 PLDDDMDKNRAFAKRIGYPVIIKASGGGGGRGMRVVRSDKDLAQSILMTKAEAKAAFNND 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+Y++    +   V+ D   +   +A           K          PA  I  +
Sbjct: 197 MVYMEKYLENPRHIEIQVLADGQGNAIYLAERDCSMQRRHQK-----VVEEAPAPGITPE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + + +      A   IG RG    +FLF   + + +++E+N 
Sbjct: 252 LRRYIGERCAKACVDIGYRGAGTFEFLF--ENGEFYFIEMNT 291


>gi|257126672|ref|YP_003164786.1| acetyl-CoA carboxylase, biotin carboxylase [Leptotrichia buccalis
           C-1013-b]
 gi|257050611|gb|ACV39795.1| acetyl-CoA carboxylase, biotin carboxylase [Leptotrichia buccalis
           C-1013-b]
          Length = 451

 Score = 67.5 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 73/220 (33%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     I E   I +        ++  DK  +++      VP+      
Sbjct: 77  AIHPGYGFLAENQRFAEICEKNGIVFIGPKPELISMMGDKATARETAIKHKVPITKGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGDQ 165
            +            I+ P +IK   GG   G+ +   ++ +         ++ +      
Sbjct: 137 IVPNVEEAKKVAEWITYPVMIKATAGGGGKGMRIAHDEKELVENYIAAQNEAKAAFGNPD 196

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+YV+    +   V+GD   +   +            K             I     
Sbjct: 197 VYIEKYVEEPRHVEIQVIGDKFGNAVHLGERDCTIQRRHQK----LIEESPSTGIDAKTR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +++ + A    + IG   +   +FL D      +++E+N 
Sbjct: 253 EKMGKFASKLVKGIGYDSVGTLEFLVDKNMN-FYFMEMNT 291


>gi|103487018|ref|YP_616579.1| carbamoyl-phosphate synthase L chain, ATP-binding [Sphingopyxis
           alaskensis RB2256]
 gi|98977095|gb|ABF53246.1| Carbamoyl-phosphate synthase L chain, ATP-binding [Sphingopyxis
           alaskensis RB2256]
          Length = 612

 Score = 67.5 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 40/225 (17%), Positives = 83/225 (36%), Gaps = 24/225 (10%)

Query: 58  LHGNFG---EDGLV-QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
           +H  +G   E+    QA+++   + +      +      K  +K++++  GVPV P  + 
Sbjct: 78  IHPGYGFLSENAAFAQAVID-AGLVWVGPNPASITAMGLKDAAKKLMAEAGVPVTPGYMG 136

Query: 114 NRFT----MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
                    +    I  P +IK + GG   G+  +         L     ++++    D 
Sbjct: 137 ENQDPAFLAERAAEIGYPVLIKAVAGGGGKGMRKVDSPADFLDALASCQREAAASFGNDH 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           +LIE+Y+     +   + GD   +V              L+          PA  +    
Sbjct: 197 VLIEKYILTPRHIEVQIFGDTHGNVV-----HLFERDCSLQRRHQKVIEEAPAPGMDEAT 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR----KVFWLEINV 264
             E+   A  A +A+   G    +F+ D        +++++E+N 
Sbjct: 252 RAELCAAAVRAAKAVDYVGAGTIEFIADASEGLRADRIWFMEMNT 296


>gi|323139085|ref|ZP_08074143.1| Carbamoyl-phosphate synthase, L chain ATP-binding [Methylocystis
           sp. ATCC 49242]
 gi|322395649|gb|EFX98192.1| Carbamoyl-phosphate synthase, L chain ATP-binding [Methylocystis
           sp. ATCC 49242]
          Length = 669

 Score = 67.5 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 35/198 (17%), Positives = 69/198 (34%), Gaps = 14/198 (7%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL-VNRFTMDS---QHLISPPYVIK 131
            I +      A     DK+ SK+  S+  V V P  L V     ++      I  P ++K
Sbjct: 99  NIVFIGPNPRAIEAMGDKIESKKFASAAKVNVVPGYLGVIEDAQEAIRIADEIGYPVMLK 158

Query: 132 PLKGGSSLGIIVIKKDQSIPL----DLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDAS 186
              GG   G+ +  K   +         +++S    D++ IE+++ +   +   V+GD  
Sbjct: 159 ASAGGGGKGMRIAYKADEVAEGFTRARSEAASSFGDDRVFIEKFIVNPRHIEIQVLGDKH 218

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRS 246
            +V  +   +        K             +      E+   A    +A+        
Sbjct: 219 GNVIHLNERECSIQRRNQK----VIEEAPSPLLDEKTRAEMGAQAIALAKAVDYDSAGTV 274

Query: 247 DFLFDPLSRKVFWLEINV 264
           +F      +  ++LE+N 
Sbjct: 275 EF-VAGQDKSFYFLEMNT 291


>gi|240127438|ref|ZP_04740099.1| carbamoyl phosphate synthase large subunit [Neisseria gonorrhoeae
           SK-93-1035]
 gi|268685811|ref|ZP_06152673.1| carbamoyl-phosphate synthase subunit large [Neisseria gonorrhoeae
           SK-93-1035]
 gi|268626095|gb|EEZ58495.1| carbamoyl-phosphate synthase subunit large [Neisseria gonorrhoeae
           SK-93-1035]
          Length = 1071

 Score = 67.5 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 50/278 (17%), Positives = 101/278 (36%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +              DV        ++V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYKVILVNSNPATIMTDPEMADVTYIEPIMWQTVEKIIAKERPDAILP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      +L    +    +   A   + D+ R K+ +   G+    S +
Sbjct: 89  TMGGQTALNCALDLARNGVLAKYNVELIGATEDAIDKAEDRGRFKEAMEKIGLSCPKSFV 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     + +Q  +  P +I+P       G  +            +    +   +LLIEQ
Sbjct: 149 CHTMNEALAAQEQVGFPTLIRPSFTMGGSGGGIAYNKDEFLAICERGFDASPTHELLIEQ 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            V G  E    V+ D + +   I   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SVLGWKEYEMEVVRDKADNCIIICSIEN----FDPMGVHTGDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RNASLAVLREIGVDTGGSNVQFAVNPENGEMIVIEMNP 302



 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 29/192 (15%), Positives = 72/192 (37%), Gaps = 8/192 (4%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYVIKPL 133
            +    +   +   + D+ R ++V++  G+   P+ + +           I  P V++P 
Sbjct: 652 GVNIIGTSADSIDAAEDRERFQKVLNDLGLRQPPNRIAHNEEEALVKAEEIGYPLVVRPS 711

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEI 192
                  + +I   + +   + ++   +    +L++ ++ + IE+    + D    V   
Sbjct: 712 YVLGGRAMQIIHSAEQLQKYMREAVQVSEDSPVLLDFFLNNAIEVDVDCVSDGKDVVIGG 771

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            +   +       +S  +   + P  +  +I  E++R       A+G  G+    F    
Sbjct: 772 IMQHVEQAGI---HSGDSGCSLPPYSLSEEIQDEIRRQTKAMAYALGVVGLMNVQFAV-- 826

Query: 253 LSRKVFWLEINV 264
               VF LE+N 
Sbjct: 827 QDGVVFVLEVNP 838


>gi|30172934|sp|Q981V0|ARLY2_RHILO RecName: Full=Argininosuccinate lyase 2; Short=ASAL 2; AltName:
           Full=Arginosuccinase 2
 gi|14028017|dbj|BAB54609.1| argininosuccinate lyase [Mesorhizobium loti MAFF303099]
          Length = 927

 Score = 67.5 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 40/216 (18%), Positives = 79/216 (36%), Gaps = 21/216 (9%)

Query: 88  ALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145
           A   +K +    +    +P+  + L    R   +     + P V+KP+ G  S G+ +  
Sbjct: 126 ATCRNKWKQATELQRHSIPIPETWLATSIRDVENILAHGTLPVVVKPVSGSGSSGVRLCD 185

Query: 146 KDQSIPLDLLQSSSWNHG------DQLLIEQYVDGIELTCGVMG-DASLDVTEIAVPKSD 198
              +       + S            +LI+QYV+G E +  ++  D  L    I      
Sbjct: 186 SAAAAIAGFNSAKSVLQDQVDLPSPDILIQQYVEGKEYSAEIIAYDGKLHCLGILAKHKG 245

Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR-GISRSDFLFDPLSRKV 257
                     +   H  PA +     +E+   A  A  A+G   G +  +F+        
Sbjct: 246 -----PPPCFVEVGHDFPAPLLEPSLQELASFASGAVSALGLEFGPAHVEFVITESG--P 298

Query: 258 FWLEINVQPGMTPVSIFPEMAAYA-GYSFRELLLWM 292
             +E+N +       + P M ++A G S  ++++ +
Sbjct: 299 VIIEVNPR---LAGGMIPVMLSHALGTSILDMVIRL 331


>gi|260889104|ref|ZP_05900367.1| carbamoyl-phosphate synthase, large subunit [Leptotrichia hofstadii
           F0254]
 gi|260861164|gb|EEX75664.1| carbamoyl-phosphate synthase, large subunit [Leptotrichia hofstadii
           F0254]
          Length = 1074

 Score = 67.5 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 48/274 (17%), Positives = 106/274 (38%), Gaps = 33/274 (12%)

Query: 20  KACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNVL 58
           +AC S L + G+KV  ++        D+ +                ++   +PD     L
Sbjct: 45  QACLS-LREEGYKVILVNSNPATIMTDKEIADKVYIEPLTVEFVSKIIRKERPDALLPTL 103

Query: 59  HGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
            G  G +  V+     +LE   +    + + +   + D+   + +++  G PV  S +++
Sbjct: 104 GGQVGLNLAVELHKAGVLEECGVELLGTKLDSIKQAEDRELFRDLMNELGEPVPESDIIH 163

Query: 115 RFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                 +    I  P +++P       G  +   D+ +   +     ++   Q L+E+ +
Sbjct: 164 NLEEARRFVEKIGYPVIVRPAFTMGGTGGGICHNDEELEDIVTNGLRYSPVTQCLLEKSI 223

Query: 173 DG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRL 230
            G  E+   VM D++   T I V   +     +   + +S  V P++ +    Y  ++ +
Sbjct: 224 SGYKEIEYEVMRDSND--TAIVVCNMENID-PVGIHTGDSIVVAPSQTLTDREYHMLRDV 280

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +    +A+   G        DP S   + +E+N 
Sbjct: 281 SLKIIRALKIEGGCNVQLALDPYSFNYYIIEVNP 314



 Score = 61.3 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 21/210 (10%), Positives = 72/210 (34%), Gaps = 14/210 (6%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVC--PSILVNRFTMDSQHLISPPYVIKPL 133
            +    + +     + ++ + + ++    +P     +       + +   I  P +++P 
Sbjct: 663 GVKILGTALEEIDNAENRDKFEALLHKLNIPQPLGKTAFDTETAVKNAAEIGYPVLVRPS 722

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
                  + ++ +++ +   +  +   +    +L ++Y+ G E+    + D    V    
Sbjct: 723 YVLGGRAMEIVYREEELRQYMENAVKVSPDHPVLTDRYLVGKEIEVDAICDGETVVIPGI 782

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
           +   +           +S  V P + I     + +        + +   G+    ++   
Sbjct: 783 MEHIERAGVHS----GDSIAVYPPQSITDSQKRTLIDYTTRLAKGLNIIGLLNIQYVI-- 836

Query: 253 LSRKVFWLEIN-----VQPGMTPVSIFPEM 277
              +V+ LE+N       P ++ ++  P  
Sbjct: 837 SDGEVYVLEVNPRSSRTVPFLSKITGVPMA 866


>gi|254797151|ref|YP_003081989.1| propionyl-CoA carboxylase alpha chain [Neorickettsia risticii str.
           Illinois]
 gi|254590385|gb|ACT69747.1| propionyl-CoA carboxylase alpha chain [Neorickettsia risticii str.
           Illinois]
          Length = 652

 Score = 67.5 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/233 (12%), Positives = 85/233 (36%), Gaps = 15/233 (6%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
            S+   +     D      +G   E+      +E     +        ++  DK+ +K++
Sbjct: 65  ESILTAVKKSGADAVHPG-YGFLSENPSFARSVEQAGFTFIGPSSECISMMSDKVMAKKI 123

Query: 100 VSSCGVPVCPSILVNRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSI----P 151
                + + P  L      +        I  P +IK   GG   G+ ++ +++ +     
Sbjct: 124 ALEASINLVPGYLGEISDYEQAVSIAKEIGFPVLIKAAAGGGGKGMRLVNREEELREAMQ 183

Query: 152 LDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLN 210
           L   ++ ++   +++ IE+Y+     +   ++ D +  V  +   +        K     
Sbjct: 184 LACHEALNFFSDERIFIEKYITNPRHIEIQIIADKNGHVICLGERECSVQRRHQKVVEEA 243

Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            + V    +   + +++   +    +A+    +   +++ D   R  +++E+N
Sbjct: 244 PSLV----LDRGLREKMYEQSIRLARAVSYTSVGTVEYILD-QERNFYFMEMN 291


>gi|77414426|ref|ZP_00790578.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus
           agalactiae 515]
 gi|77159508|gb|EAO70667.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus
           agalactiae 515]
          Length = 456

 Score = 67.5 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 74/220 (33%), Gaps = 16/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  FG   E+     + E + + +            DK+ ++  +    VPV P    
Sbjct: 77  AVHPGFGFLSENSKFATMCEEMNLKFIGPSGEVMDKMGDKINARAEMIKADVPVIPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
            +      +     I  P ++K   GG   GI  +K    +         ++ +      
Sbjct: 137 QVTSVEEAVSIAEEIGYPLMLKASAGGGGKGIRKVKSADELKPAFESASQEALAAFGNGA 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+ +     +   ++GD+   +  +            K             I   + 
Sbjct: 197 MYIEKVIYPARHIEVQILGDSFGKIVHLGERDCSLQRNNQKVL----EESPSVAIGNTLR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +++   A  A +A+        +FL D  S + +++E+N 
Sbjct: 253 QQIGEAAVRAAEAVSYENAGTIEFLLDENSGQFYFMEMNT 292


>gi|332638399|ref|ZP_08417262.1| carbamoyl-phosphate synthase large subunit [Weissella cibaria KACC
           11862]
          Length = 1025

 Score = 67.5 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/196 (15%), Positives = 70/196 (35%), Gaps = 9/196 (4%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           LE   I    + +     + D+    QV+    +P          +  +     I  P +
Sbjct: 646 LEKHGINILGTSVADLNRAEDRASFNQVIEKLQLPQPIGQTATTVKEAVKIAKSIGYPVL 705

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           ++P        + ++  + ++   + ++ + +H   +LI+QYV G+E    V+ D    V
Sbjct: 706 VRPSYVLGGRAMEIVTNEAALADYMSRAVAVSHDHPVLIDQYVVGMEAELDVLSDGETVV 765

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           T   +   +           +S  V P + +      ++   A    + +   G+    F
Sbjct: 766 TPGVMEHIEPAGIHS----GDSMSVYPPQVLSESRQAKMIAAATALARELQIVGLLNVQF 821

Query: 249 LFDPLSRKVFWLEINV 264
           +        + +E+N 
Sbjct: 822 VI--QDDTAYVIEVNP 835



 Score = 61.3 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 52/287 (18%), Positives = 108/287 (37%), Gaps = 35/287 (12%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQID-------VDR--------------SVGLV 45
           G ++E + S   G   A AL++ G++V  ++        D+              S+  +
Sbjct: 21  GQAAEFDYS---GSQAAIALKEEGYEVVLVNSNPATIMTDKETADKVYIEPLTLASLQTI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   KPD     L G  G +   +     IL+   +    + + A   + D+ + + +++
Sbjct: 78  IQQEKPDALLPTLGGQTGLNMAKELAESGILDEYNVELIGTKLSAIEAAEDREQFRDLMT 137

Query: 102 SCGVPVCPS-ILVN-RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G PV  S I V     +    +   P +++P       G  + + +  +         
Sbjct: 138 ELGEPVPASAIAVTVAEAVQFADVQGYPVIVRPAYTLGGSGGGIAQNEAELVQITQHGLD 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   Q+LIE+ + G  E+   VM D   +   + V   + +   +   + +S  V P +
Sbjct: 198 LSPVTQVLIEESIAGYKEIEFEVMRDTKDNA--LIVASMENFD-PVGIHTGDSIVVAPVQ 254

Query: 219 -IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +    Y+ ++  A    +A+   G         P S K   +E+N 
Sbjct: 255 TLSDVDYQMLRDAALKIIRALDIAGGVNIQMALAPDSDKYAIIEVNP 301


>gi|329946679|ref|ZP_08294091.1| Carbamoyl-phosphate synthase L chain, ATP binding domain protein
           [Actinomyces sp. oral taxon 170 str. F0386]
 gi|328526490|gb|EGF53503.1| Carbamoyl-phosphate synthase L chain, ATP binding domain protein
           [Actinomyces sp. oral taxon 170 str. F0386]
          Length = 616

 Score = 67.5 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 39/216 (18%), Positives = 72/216 (33%), Gaps = 13/216 (6%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV-PVC---P 109
            +H  +G   ED      +    I +      A     DKM ++       V PV     
Sbjct: 76  AIHPGYGFLSEDADFARSIIEAGITWVGPSPEAMDALGDKMSARATAERAKVAPVPGITD 135

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
           S+      +D       P  +K   GG   GI V+  D  +       S+   G  L++E
Sbjct: 136 SVTDAGTVIDFAATHGYPVALKRTDGGGGRGITVLHNDDEVRSTPAFESAALGGGTLILE 195

Query: 170 QYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           ++V     +      D+      ++           K             +P D++  + 
Sbjct: 196 RFVTAARHIETQCARDSHGGFAVVSTRDCSLQRRNQKLL----EEAPAPFLPEDVHDRLV 251

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +    + +   G++  +FL  P    V++LE+N 
Sbjct: 252 EASRRLLETVDYIGVATCEFLLTP-EGDVWFLEVNP 286


>gi|296114386|ref|ZP_06833040.1| acetyl-CoA carboxylase biotin carboxylase subunit
           [Gluconacetobacter hansenii ATCC 23769]
 gi|295979147|gb|EFG85871.1| acetyl-CoA carboxylase biotin carboxylase subunit
           [Gluconacetobacter hansenii ATCC 23769]
          Length = 449

 Score = 67.5 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 76/220 (34%), Gaps = 18/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+      +E   + +         +  DK+ +K  + + GVP+ P    
Sbjct: 77  AIHPGYGFLSENADFAETVEAHGLTFIGPTADHIRMMGDKITAKTTMRALGVPLVPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
            +            +  P +IK   GG   G+ V      +         ++ +    D+
Sbjct: 137 ALENLEQARIVADKVGYPVLIKAAAGGGGRGMKVAATADDLEEAWSVARTEARAAFGNDE 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+Y+D    +   VM D   DV               K          PA +     
Sbjct: 197 VYLEKYLDRPRHIELQVMADTHGDVVHFGERDCSLQRRHQKLLEEAG---SPA-LNAQQR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            E+  +A  A + +G R     +FL+     +  ++E+N 
Sbjct: 253 DEIGEIATSALKKLGYRNAGTLEFLY--QDGQFCFIEMNT 290


>gi|291287333|ref|YP_003504149.1| carbamoyl-phosphate synthase, large subunit [Denitrovibrio
           acetiphilus DSM 12809]
 gi|290884493|gb|ADD68193.1| carbamoyl-phosphate synthase, large subunit [Denitrovibrio
           acetiphilus DSM 12809]
          Length = 1073

 Score = 67.5 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 55/278 (19%), Positives = 100/278 (35%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFN 56
           SG     AL++ G++V  I+        D  +                +L   +PD    
Sbjct: 29  SGTQAVKALKEEGYRVILINSNPATIMTDPEIADATYIEPLTVEMAEKILEKERPDAILP 88

Query: 57  VLHG----NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    N  ++     +LE   +    + I A   + D+   KQ ++  G+ +  S +
Sbjct: 89  TVGGQTALNLAKEINDAGLLEKYNVELIGAKIEAIDKAEDRELFKQAMTKIGLHLPASAV 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            N  +  +D    I  P +I+P       G  V    +     +      +   ++L+E+
Sbjct: 149 CNTYQDALDCIDEIGFPAIIRPSFTLGGTGGNVAYNMEEYKEYVEWGLEASPVTEILVEK 208

Query: 171 YVDG-IELTCGVMGD-ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            V G  E    VM D     V   ++   D           +S  V PA+ +    Y+E+
Sbjct: 209 SVLGWKEYELEVMRDLNDNVVIICSIENVDAMGVHT----GDSITVAPAQTLTDKEYQEL 264

Query: 228 QRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
           +  A    + IG   G S   F  +P +     +E+N 
Sbjct: 265 RNAAIKVIREIGVDTGGSNVQFAVNPANGDQIIIEMNP 302



 Score = 64.4 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 49/298 (16%), Positives = 103/298 (34%), Gaps = 42/298 (14%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAI---- 71
           ALE+ GF+   +         D D S  L    L  +   N++      DG++       
Sbjct: 586 ALEEMGFETIMVNCNPETVSTDYDTSDRLYFEPLTREHVLNIVQ-KENPDGVIVQFGGQT 644

Query: 72  -------LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQH 122
                  LE   +P   +   +   + D+ R K ++    +    + +            
Sbjct: 645 PLKLAVPLERAGVPILGTSPDSIDCAEDRERFKALMEKLDIMQPANGIAKAADEAYKIAD 704

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGV 181
            I  P V++P        + ++   +S+   ++ +   +    +LI++Y +   E+    
Sbjct: 705 QIGYPVVVRPSYVLGGRAMEIVYDRESLENYMVYAVKASEDHPVLIDKYLLHATEVDVDS 764

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGC 240
           + D    V    +   +    E    S +S   +P + I   +  E+        + +  
Sbjct: 765 ISDGETCVIGSIMQHIE----EAGVHSGDSACSIPTRTINDAVKAELMTKTKQIAKELNV 820

Query: 241 RGISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSI---FPEMAAY--AGYSFREL 288
            G+   +  +     +++ LE+N       P     SI     +MAA   AG   ++L
Sbjct: 821 VGL--MNIQYAIKDDQIYMLEVNPRASRTIP-FVSKSIGVPLAKMAAKVMAGAKLKDL 875


>gi|254474075|ref|ZP_05087467.1| acetyl-CoA carboxylase, biotin carboxylase [Pseudovibrio sp. JE062]
 gi|211956771|gb|EEA91979.1| acetyl-CoA carboxylase, biotin carboxylase [Pseudovibrio sp. JE062]
          Length = 629

 Score = 67.5 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 74/221 (33%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+           + +      A  L   K  SK  +   GVP  P    
Sbjct: 77  AVHPGYGFLAENAEFARACAEAGLVFIGPPAEAIELMGSKRLSKLRMIEAGVPCVPGYSG 136

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGD 164
              + D        I  P +IK   GG   G+ +++    +   L        +++ +G+
Sbjct: 137 ADQSTDTLAAEAARIGVPLMIKASAGGGGRGLRLVEDLSGLEDKLAAAASEAENAFGNGE 196

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDI 223
            +L +  ++   +   V  D    V              ++          P   +  +I
Sbjct: 197 LILEKAVINPRHVEIQVFADNHGHVV-----HLGERDCSVQRRHQKVVEEAPGPSVTPEI 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              + + A  A +AIG RG    +FL        +++E+N 
Sbjct: 252 RAAMGQAAVDAARAIGYRGAGTVEFLL-AEDGSFYFMEMNT 291


>gi|59800515|ref|YP_207227.1| carbamoyl phosphate synthase large subunit [Neisseria gonorrhoeae
           FA 1090]
 gi|293397753|ref|ZP_06641959.1| carbamoyl-phosphate synthase, large subunit [Neisseria gonorrhoeae
           F62]
 gi|59717410|gb|AAW88815.1| carbamoyl phosphate synthase large subunit [Neisseria gonorrhoeae
           FA 1090]
 gi|291611699|gb|EFF40768.1| carbamoyl-phosphate synthase, large subunit [Neisseria gonorrhoeae
           F62]
          Length = 1071

 Score = 67.5 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 50/278 (17%), Positives = 101/278 (36%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +              DV        ++V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYKVILVNSNPATIMTDPEMADVTYIEPIMWQTVEKIIAKERPDAILP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      +L    +    +   A   + D+ R K+ +   G+    S +
Sbjct: 89  TMGGQTALNCALDLARNGVLAKYNVELIGATEDAIDKAEDRGRFKEAMEKIGLSCPKSFV 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     + +Q  +  P +I+P       G  +            +    +   +LLIEQ
Sbjct: 149 CHTMNEALAAQEQVGFPTLIRPSFTMGGSGGGIAYNKDEFLAICERGFDASPTHELLIEQ 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            V G  E    V+ D + +   I   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SVLGWKEYEMEVVRDKADNCIIICSIEN----FDPMGVHTGDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RNASLAVLREIGVDTGGSNVQFAVNPENGEMIVIEMNP 302



 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 29/192 (15%), Positives = 72/192 (37%), Gaps = 8/192 (4%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYVIKPL 133
            +    +   +   + D+ R ++V++  G+   P+ + +           I  P V++P 
Sbjct: 652 GVNIIGTSADSIDAAEDRERFQKVLNDLGLRQPPNRIAHNEEEALVKAEEIGYPLVVRPS 711

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEI 192
                  + +I   + +   + ++   +    +L++ ++ + IE+    + D    V   
Sbjct: 712 YVLGGRAMQIIHSAEQLQKYMREAVQVSEDSPVLLDFFLNNAIEVDVDCVSDGKDVVIGG 771

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            +   +       +S  +   + P  +  +I  E++R       A+G  G+    F    
Sbjct: 772 IMQHVEQAGI---HSGDSGCSLPPYSLSEEIQDEIRRQTKAMAYALGVVGLMNVQFAV-- 826

Query: 253 LSRKVFWLEINV 264
               VF LE+N 
Sbjct: 827 QDGVVFVLEVNP 838


>gi|78224483|ref|YP_386230.1| 3-methylcrotonoyl-CoA carboxylase subunit alpha [Geobacter
           metallireducens GS-15]
 gi|78195738|gb|ABB33505.1| 3-methylcrotonoyl-CoA carboxylase, alpha subunit [Geobacter
           metallireducens GS-15]
          Length = 668

 Score = 67.5 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 72/220 (32%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+           + +      A      K  +K+++   GVP+ P    
Sbjct: 77  AIHPGYGFLSENAEFAEACAKAGVVFIGPPTGAIRAMGSKSAAKEIMEKAGVPLVPGYHG 136

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
                +        I  P +IK   GG   G+  +++    P  L  +          D+
Sbjct: 137 ENQDPEFLGREAKRIGFPVLIKASAGGGGKGMRAVREAVEFPDALASAKREAQASFGDDR 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           +L+E+Y+     +   V  D   +   +            K             +   + 
Sbjct: 197 VLLEKYLTKPRHVEIQVFADTHGNAVHLFERDCSIQRRHQKVL----EEAPAPGMKPALR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K++   A  A  AIG  G    +FL D      +++E+N 
Sbjct: 253 KKMGEAAVAAASAIGYVGAGTVEFLLDE-DGSFYFMEMNT 291


>gi|56420934|ref|YP_148252.1| acetyl-CoA carboxylase biotin carboxylase subunit [Geobacillus
           kaustophilus HTA426]
 gi|56380776|dbj|BAD76684.1| acetyl-CoA carboxylasesubunit (biotin carboxylasesubunit)
           [Geobacillus kaustophilus HTA426]
          Length = 451

 Score = 67.5 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 34/221 (15%), Positives = 81/221 (36%), Gaps = 18/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     +     + +      A A    K  +++ +   GVP+ P    
Sbjct: 77  AIHPGYGFLAENEAFAELCRECNVTFIGPSPEAIAKMGIKDIARETMREAGVPIVPGSRG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGD 164
            I            I  P +IK   GG   GI V + +  +   +       ++++    
Sbjct: 137 VIESLDEARAIAEEIGYPVIIKATAGGGGKGIRVARDEGELVKGINITQQEAATAFG-NP 195

Query: 165 QLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            + IE+Y++    +   V+ D+  +   +            K             +  ++
Sbjct: 196 GVYIEKYIEDFRHVEIQVLADSYGNTIHLGERDCSIQRRLQK----LVEEAPSPALDDEM 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +++   A  A +A+   G    +F++D  +++ +++E+N 
Sbjct: 252 RRKMGEAAVKAAKAVNYTGAGTVEFIYDHRNKQFYFMEMNT 292


>gi|77409217|ref|ZP_00785926.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus
           agalactiae COH1]
 gi|77172160|gb|EAO75320.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus
           agalactiae COH1]
          Length = 456

 Score = 67.5 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 74/220 (33%), Gaps = 16/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  FG   E+     + E + + +            DK+ ++  +    VPV P    
Sbjct: 77  AVHPGFGFLSENSKFATMCEEMNLKFIGPSGEVMDKMGDKINARAEMIKADVPVIPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
            +      +     I  P ++K   GG   GI  +K    +         ++ +      
Sbjct: 137 QVTSVEEAVSIAEEIGYPLMLKASAGGGGKGIRKVKSADELKPAFESASQEALAAFGNGA 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+ +     +   ++GD+   +  +            K             I   + 
Sbjct: 197 MYIEKVIYPARHIEVQILGDSFGKIVHLGERDCSLQRNNQKVL----EESPSVAIGNTLR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +++   A  A +A+        +FL D  S + +++E+N 
Sbjct: 253 QQIGEAAVRAAEAVSYENAGTIEFLLDENSGQFYFMEMNT 292


>gi|262372817|ref|ZP_06066096.1| acetyl-CoA carboxylase, biotin carboxylase [Acinetobacter junii
           SH205]
 gi|262312842|gb|EEY93927.1| acetyl-CoA carboxylase, biotin carboxylase [Acinetobacter junii
           SH205]
          Length = 577

 Score = 67.5 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 35/205 (17%), Positives = 76/205 (37%), Gaps = 14/205 (6%)

Query: 69  QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP----VCPSILVNRFTMDSQHLI 124
           QA+L+     +      A     DK++++++  S G P        +      +      
Sbjct: 95  QAVLD-AGFIWVGPPPNAIQQLGDKIQARKIAQSVGAPLVQGTAQPLQSAEEALKFAKQY 153

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQS----IPLDLLQSSSWNHGDQLLIEQYVD-GIELTC 179
             P  IK   GG   G+ V  + +         + ++ +     +  +EQY+D    +  
Sbjct: 154 GLPIAIKAAYGGGGRGLKVAWELEEVASLYESAVREAIAAFGRGECYVEQYLDKPRHIEA 213

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
            ++ D    +  I V  +   S + + +           I  DIY+++   +    +A+ 
Sbjct: 214 QILADQ---LGHIVVVGTRDCSLQRR-NQKLVEEAPAPFISDDIYQQIVSSSIKLCRAVD 269

Query: 240 CRGISRSDFLFDPLSRKVFWLEINV 264
             G    ++L    + K+ +LE+N 
Sbjct: 270 YVGAGTVEYLLSQQNSKLSFLEVNT 294


>gi|256840245|ref|ZP_05545753.1| carbamoylphosphate synthase large subunit [Parabacteroides sp. D13]
 gi|256737517|gb|EEU50843.1| carbamoylphosphate synthase large subunit [Parabacteroides sp. D13]
          Length = 314

 Score = 67.5 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 49/262 (18%), Positives = 89/262 (33%), Gaps = 47/262 (17%)

Query: 19  GKACASALEDAGFKV----------SQIDV--DRSVGLVLAHLKPDLAFNVLHGNFGEDG 66
             A   A  D  ++V             D+     +  +L+ + P+L+    H       
Sbjct: 44  APAIYEA--DKYYQVPRMMASDYMEVIFDICRKEKITAILSLIDPELSLLAKHEKE---- 97

Query: 67  LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL--I 124
                   L +    S      +S+DK++  + +++ G     S            L  I
Sbjct: 98  -----FAALSVKVIGSSYELCEMSLDKIQMYEWLTTHGYKTAKSYTDKSVFFKDIELGKI 152

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
           S P  +KP++G +SL I  +   ++I L       + H D L+I++++DG E+   V  D
Sbjct: 153 SYPVFVKPVRGSASLAISKVNDKETIEL------LFAHADNLMIQEFLDGQEIGADVYID 206

Query: 185 A-SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
             S +V  I   +        K                  ++  + R    A    G RG
Sbjct: 207 MLSGEVVSIFTKR--------KIVMRAGETDKAVSFKDEKLFCLINRFVKEA----GYRG 254

Query: 243 ISRSDFLFDPLSRKVFWLEINV 264
               D     +    +  E+N 
Sbjct: 255 QIDIDIF--EIGGDYYISEVNP 274


>gi|261417742|ref|YP_003251424.1| acetyl-CoA carboxylase biotin carboxylase subunit [Geobacillus sp.
           Y412MC61]
 gi|319767446|ref|YP_004132947.1| acetyl-CoA carboxylase, biotin carboxylase [Geobacillus sp.
           Y412MC52]
 gi|261374199|gb|ACX76942.1| acetyl-CoA carboxylase, biotin carboxylase [Geobacillus sp.
           Y412MC61]
 gi|317112312|gb|ADU94804.1| acetyl-CoA carboxylase, biotin carboxylase [Geobacillus sp.
           Y412MC52]
          Length = 451

 Score = 67.5 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 34/221 (15%), Positives = 81/221 (36%), Gaps = 18/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     +     + +      A A    K  +++ +   GVP+ P    
Sbjct: 77  AIHPGYGFLAENEAFAELCRECNVTFIGPSPEAIAKMGIKDIARETMREAGVPIVPGSRG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGD 164
            I            I  P +IK   GG   GI V + +  +   +       ++++    
Sbjct: 137 VIESLDEARAIAEEIGYPVIIKATAGGGGKGIRVARDEGELVKGINITQQEAATAFG-NP 195

Query: 165 QLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            + IE+Y++    +   V+ D+  +   +            K             +  ++
Sbjct: 196 GVYIEKYIEDFRHVEIQVLADSYGNTIHLGERDCSIQRRLQK----LVEEAPSPALDDEM 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +++   A  A +A+   G    +F++D  +++ +++E+N 
Sbjct: 252 RRKMGEAAVKAAKAVNYTGAGTVEFIYDHRNKQFYFMEMNT 292


>gi|157863079|gb|ABV90644.1| carbamoyl-phosphate synthase large subunit [Pseudomonas sp. G]
          Length = 1073

 Score = 67.5 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 78/197 (39%), Gaps = 10/197 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYV 129
           LE   +P   +   A   + D+ R +Q+V    +   P+  V        +   I  P V
Sbjct: 653 LEAAGVPIIGTSPDAIDRAEDRERFQQMVERLNLRQPPNATVRSEDEAVRAAAKIGYPLV 712

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTC-GVMGDASL 187
           ++P        + ++ K++ +   L  +   ++   +L++ +++  IE+    V     +
Sbjct: 713 VRPSYVLGGRAMEIVYKEEELKRYLRDAVQVSNDSPVLLDHFLNCAIEMDVDAVCDGKDV 772

Query: 188 DVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
            +  I         +    +     + LPA+I  ++ ++V+++A      +G  G+   +
Sbjct: 773 VIGAIMQHIEQAGVHSGDSACSLPPYSLPARIQDEMREQVKKMALE----LGVVGL--MN 826

Query: 248 FLFDPLSRKVFWLEINV 264
                    ++ +E+N 
Sbjct: 827 VQLALQGEDIYVIEVNP 843



 Score = 64.8 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 44/280 (15%), Positives = 97/280 (34%), Gaps = 38/280 (13%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D D            ++V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPDMADATYIEPIKWQTVAKIIEKERPDAVLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +    + +LE   +    +       + D+ R  + + S G+    S +
Sbjct: 89  TMGGQTALNCALDLEREGVLEKFGVEMIGANADTIDKAEDRSRFDKAMKSIGLACPRSGI 148

Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     +     +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHSMEEANAVLETLGFPCIIRPSFTMGGTGGGIAYNREEFEEICARGLDLSPTKELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D   + +   ++   D           +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKKDNCIIVCSIENFDPMGVHT----GDSITVAPAQTLTDKEYQIL 264

Query: 228 QRLAFLAHQAIG---CRGISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG     G S   F   P + ++  +E+N 
Sbjct: 265 RNASLAVLREIGVETGNG-SNVQFGICPNTGRMVVIEMNP 303


>gi|238797916|ref|ZP_04641407.1| Biotin carboxylase [Yersinia mollaretii ATCC 43969]
 gi|238718221|gb|EEQ10046.1| Biotin carboxylase [Yersinia mollaretii ATCC 43969]
          Length = 449

 Score = 67.5 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 39/225 (17%), Positives = 82/225 (36%), Gaps = 27/225 (12%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+      +E     +         L  DK+ +   +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAEQVERSGFIFIGPRAETIRLMGDKVSAISAMKKAGVPCVPGSDG 136

Query: 111 -----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWN 161
                +  N+        I  P +IK   GG   G+ V++ D+ +   +     ++ +  
Sbjct: 137 PLTDDVTKNKA---FAKRIGYPVIIKASGGGGGRGMRVVRHDKDLEQSINMTRAEAKAAF 193

Query: 162 HGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-I 219
           + D + +E+Y++    +   ++ D   +   +A           K          PA  I
Sbjct: 194 NNDMVYMEKYLENPRHIEIQILADGQGNAIYLAERDCSMQRRHQK-----VVEEAPAPGI 248

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             ++ + +      A   IG RG    +FL+   + + +++E+N 
Sbjct: 249 TSEMRRHIGERCAKACVEIGYRGAGTFEFLY--ENGEFYFIEMNT 291


>gi|296103165|ref|YP_003613311.1| ribosomal protein S6 modification protein [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
 gi|295057624|gb|ADF62362.1| ribosomal protein S6 modification protein [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
          Length = 300

 Score = 67.5 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 58/289 (20%), Positives = 117/289 (40%), Gaps = 45/289 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-------VDRSVGLVLAHLK--- 50
           +A+L       R+ +L S K    A    G ++  +D       +D +   +    +   
Sbjct: 3   IAILS------RDGTLYSCKRLREAAAKRGHQIEILDPMSCYMNIDPAASSIHYKGRKLP 56

Query: 51  -PDLAFNVLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV 105
             D     + G+    +G   L Q   E+L   Y  +  +A + + DK+RS Q+++  G+
Sbjct: 57  HFDAVIPRI-GSQITYYGTAALRQ--FEMLG-SYPLNESVAISRARDKLRSLQLLARQGI 112

Query: 106 --PVCPSILVNRFTMDSQHLISP-PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
             PV         T D   ++   P VIK ++G   +G+++ +  Q+     +  +    
Sbjct: 113 DLPVTGIAHSPDDTSDLIDMVGGAPLVIKLVEGTQGIGVVLAETRQAAES--VIDAFRGL 170

Query: 163 GDQLLIEQYVD---GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI 219
              +L+++Y++   G ++ C V+G+  +   E    + DF S   +              
Sbjct: 171 NAHILVQEYIEEAKGRDIRCFVVGNEVVAAIERQAKEGDFRSNLHRGGVARV-------- 222

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268
             DI +  + +A  A Q +G   ++  D      +R    +E+N  PG+
Sbjct: 223 -ADISEREREIAVKAAQTLGL-DVAGVD--LLRATRGPLVMEVNASPGL 267


>gi|227114250|ref|ZP_03827906.1| carbamoyl phosphate synthase large subunit [Pectobacterium
           carotovorum subsp. brasiliensis PBR1692]
          Length = 514

 Score = 67.5 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 42/278 (15%), Positives = 96/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D +              V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +    Q +L    +    +   A   + D+ R    +   G+    S +
Sbjct: 89  TMGGQTALNCALELERQGVLAEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLDTARSGI 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     +     +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHNMEEALAVAADVGFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTKELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + +   +   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIEN----FDAMGIHTGDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RNASMAVLREIGVETGGSNVQFSVNPKTGRLIVIEMNP 302


>gi|225076110|ref|ZP_03719309.1| hypothetical protein NEIFLAOT_01142 [Neisseria flavescens
           NRL30031/H210]
 gi|224952554|gb|EEG33763.1| hypothetical protein NEIFLAOT_01142 [Neisseria flavescens
           NRL30031/H210]
          Length = 1071

 Score = 67.5 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/192 (14%), Positives = 73/192 (38%), Gaps = 8/192 (4%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYVIKPL 133
            +    +   +   + D+ R ++V++  G+   P+ + +           I  P V++P 
Sbjct: 652 GVNIIGTSADSIDAAEDRERFQKVLNDLGLRQPPNRIAHNEEEALVRAEEIGYPLVVRPS 711

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEI 192
                  + ++   +++   + ++   +    +L++ ++ + IE+    + D    V   
Sbjct: 712 YVLGGRAMQIVHSAEALQKYMREAVQVSEDSPVLLDFFLNNAIEVDVDCVSDGKDVVIGG 771

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            +   +       +S  +   + P  +  +I  E++R       A+G  G+    F    
Sbjct: 772 IMQHVEQAGI---HSGDSGCSLPPYSLSEEIQDEIRRQTKAMAYALGVVGLMNVQFAV-- 826

Query: 253 LSRKVFWLEINV 264
               VF LE+N 
Sbjct: 827 QDGVVFVLEVNP 838



 Score = 66.3 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 50/278 (17%), Positives = 101/278 (36%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +              DV        ++V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYKVILVNSNPATIMTDPEMADVTYIEPIMWQTVEKIIAKERPDAILP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      +L    +    +   A   + D+ R K+ +   G+    S +
Sbjct: 89  TMGGQTALNCALDLARNGVLAKYNVELIGATEDAIDKAEDRGRFKEAMEKIGLSCPKSFV 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     + +Q  +  P +I+P       G  +            +    +   +LLIEQ
Sbjct: 149 CHTMNEALAAQEQVGFPTLIRPSFTMGGSGGGIAYNKDEFLAICERGFDASPTHELLIEQ 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            V G  E    V+ D + +   I   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SVLGWKEYEMEVVRDKNDNCIIICSIEN----FDPMGVHTGDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RNASLAVLREIGVDTGGSNVQFAVNPENGEMIVIEMNP 302


>gi|330877244|gb|EGH11393.1| carbamoyl phosphate synthase large subunit [Pseudomonas syringae
           pv. morsprunorum str. M302280PT]
          Length = 1073

 Score = 67.5 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/196 (14%), Positives = 75/196 (38%), Gaps = 8/196 (4%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYV 129
           LE   +P   +   A   + D+ R +Q+V    +   P+  V        +   I  P V
Sbjct: 653 LEAAGVPIIGTSPDAIDRAEDRERFQQMVERLNLRQPPNATVRSEDEAIRAAAKIGYPLV 712

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLD 188
           ++P        + ++ ++  +   L ++   ++   +L++ +++  IE+    + D +  
Sbjct: 713 VRPSYVLGGRAMEIVYQEDELKRYLREAVQVSNDSPVLLDHFLNCAIEMDVDAVCDGTDV 772

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           V    +   +       +S  ++  + P  +P  I  E++         +G  G+   + 
Sbjct: 773 VIGAIMQHIEQAGV---HSGDSACSLPPYSLPAHIQDEMREQVKKMALELGVVGL--MNV 827

Query: 249 LFDPLSRKVFWLEINV 264
                   ++ +E+N 
Sbjct: 828 QLALQGEDIYVIEVNP 843



 Score = 61.3 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 95/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +              D         ++V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPAMADATYIEPIKWQTVAKIIEKERPDALLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +    + +LE   +    +       + D+ R  + + S G     S +
Sbjct: 89  TMGGQTALNCALDLEREGVLEKFGVEMIGANADTIDKAEDRSRFDKAMKSIGQACPRSGI 148

Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     +     +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHSMEEANAVLEKLGFPCIIRPSFTMGGTGGGIAYNREEFEEICARGLDLSPTKELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D   + +   ++   D           +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKKDNCIIVCSIENFDPMGVHT----GDSITVAPAQTLTDKEYQIL 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F   P + ++  +E+N 
Sbjct: 265 RNASLAVLREIGVETGGSNVQFGICPDTGRMVVIEMNP 302


>gi|330875234|gb|EGH09383.1| carbamoyl phosphate synthase large subunit [Pseudomonas syringae
           pv. glycinea str. race 4]
          Length = 1027

 Score = 67.5 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/196 (14%), Positives = 75/196 (38%), Gaps = 8/196 (4%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYV 129
           LE   +P   +   A   + D+ R +Q+V    +   P+  V        +   I  P V
Sbjct: 607 LEAAGVPIIGTSPDAIDRAEDRERFQQMVERLNLRQPPNATVRSEDEAIRAAAKIGYPLV 666

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLD 188
           ++P        + ++ ++  +   L ++   ++   +L++ +++  IE+    + D +  
Sbjct: 667 VRPSYVLGGRAMEIVYQEDELKRYLREAVQVSNDSPVLLDHFLNCAIEMDVDAVCDGTDV 726

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           V    +   +       +S  ++  + P  +P  I  E++         +G  G+   + 
Sbjct: 727 VIGAIMQHIEQAGV---HSGDSACSLPPYSLPAHIQDEMREQVKKMALELGVVGL--MNV 781

Query: 249 LFDPLSRKVFWLEINV 264
                   ++ +E+N 
Sbjct: 782 QLALQGEDIYVIEVNP 797


>gi|308051027|ref|YP_003914593.1| alpha-L-glutamate ligase, RimK family [Ferrimonas balearica DSM
           9799]
 gi|307633217|gb|ADN77519.1| alpha-L-glutamate ligase, RimK family [Ferrimonas balearica DSM
           9799]
          Length = 311

 Score = 67.5 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 42/203 (20%), Positives = 84/203 (41%), Gaps = 20/203 (9%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ---HLISPPY 128
           LE L + Y  +   +     DK+ ++Q+++   +P   ++LV +F +D +     +  P 
Sbjct: 87  LERLGV-YVVNQSHSIEAVKDKLFTQQILAQENLPTPNTMLV-KFPVDVELVKKSLGFPV 144

Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD---GIELTCGVMGDA 185
           VIK L G    G+ + K        +    S      +++++++    G +L    +G  
Sbjct: 145 VIKTLSGTQGSGVFLSKDASEFNDLMQLIESTAQNANIILQEFIKASHGRDLRVFTIGGR 204

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
           ++   E          ++  YS+  S        P ++  E++ LA    +A+G   ++ 
Sbjct: 205 AVACFERVAKDG---DFKANYSNGGSLK------PTEMTPEIEWLATQCSRAVGL-DVAG 254

Query: 246 SDFLFDPLSRKVFWLEINVQPGM 268
            D LFD  +      E N  PG 
Sbjct: 255 IDLLFD--TDHFKICEANSSPGF 275


>gi|290955748|ref|YP_003486930.1| ATP-binding biosynthetic protein [Streptomyces scabiei 87.22]
 gi|260645274|emb|CBG68360.1| putative ATP-binding biosynthetic enzyme [Streptomyces scabiei
           87.22]
          Length = 426

 Score = 67.5 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 91/222 (40%), Gaps = 24/222 (10%)

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVIKKD 147
             DK R++ ++++ G+P     L +      +    I  P V+KP   G+S+G+++ + +
Sbjct: 107 CRDKHRTRSMLTAAGLPQPGFELTDTLEQAREVAARIGYPVVVKPRALGASMGVVLAEDE 166

Query: 148 QSIPLDLLQSSSWN------HGDQLLIEQYVDGIELTC-GVMGDASLDVTEIAVPKSDFY 200
             +    L +S+ +           ++E Y  G E++  GV+         +A  ++  Y
Sbjct: 167 TQLDRAYLVASNASLVGDEPFRGGAIVEGYARGPEISIDGVVHQGEYRAMFVARKETGHY 226

Query: 201 SYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFW 259
            Y          HV+ A  PL    E+  +   AH+ +G   GI+ ++            
Sbjct: 227 PY-----FEEVGHVVDAADPLLRDPELLDVLTKAHEVLGVENGITHTEVKLTSYG--PVI 279

Query: 260 LEINVQPGMTPVSIFPEMAA-YAGYSFRELLLWMVEDASCLR 300
           +EIN   G     + P +     G    E+   +V+ A+ LR
Sbjct: 280 IEIN---GRLGGDLIPFLGRIATGIDTGEV---LVDAAAGLR 315


>gi|238921357|ref|YP_002934872.1| acetyl-CoA carboxylase biotin carboxylase subunit [Edwardsiella
           ictaluri 93-146]
 gi|238870926|gb|ACR70637.1| acetyl-CoA carboxylase, biotin carboxylase subunit, putative
           [Edwardsiella ictaluri 93-146]
          Length = 449

 Score = 67.5 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 81/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         L  DK+ +   +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAEQVERSGFIFIGPKAETIRLMGDKVSAINAMKKAGVPCVPGSDG 136

Query: 112 LVNRF---TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
            ++            I  P +IK   GG   G+ V++ D+ +   +     ++ +  + D
Sbjct: 137 PLDDDMDKNRAFAKRIGYPVIIKASGGGGGRGMRVVRSDKDLAQSILMTRAEAKAAFNND 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+Y++    +   V+ D   +   +A           K          PA  I  +
Sbjct: 197 MVYMEKYLENPRHIEIQVLADGQGNAIYLAERDCSMQRRHQK-----VVEEAPAPGITPE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + + +      A   IG RG    +FLF   + + +++E+N 
Sbjct: 252 LRRYIGERCAKACVDIGYRGAGTFEFLF--ENGEFYFIEMNT 291


>gi|261345823|ref|ZP_05973467.1| phosphoribosylglycinamide formyltransferase 2 [Providencia
           rustigianii DSM 4541]
 gi|282566312|gb|EFB71847.1| phosphoribosylglycinamide formyltransferase 2 [Providencia
           rustigianii DSM 4541]
          Length = 392

 Score = 67.5 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 40/278 (14%), Positives = 84/278 (30%), Gaps = 40/278 (14%)

Query: 19  GKACASALEDAGFKVSQID--------------------VDRSVGLVLAHLKPDLAFNVL 58
           GK  A   +  G +V  +D                       ++  ++   KPD     +
Sbjct: 24  GKEVAIECQRLGIEVIAVDRYDNAPAMHVAHRSYTINMLDGEAIRQLVEQEKPDFIVPEI 83

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT- 117
                        LEL       S          +   +       +P      V     
Sbjct: 84  EAIA---TKTLVELELQGQKVVPSANAVYLTMNREGIRRLAAEELQLPTSEYRFVETQDD 140

Query: 118 -MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD--LLQSSSWNHGDQLLIEQYVDG 174
            + +   I  P ++KP+   S  G  VI+ D+ +       Q        ++++E+ V+ 
Sbjct: 141 FIAAATEIGFPCIVKPVMSSSGKGQSVIRSDEQLQAAWSYSQEGGRAGQGRVIVEKMVN- 199

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFL 233
            +    ++  +++D      P         +    +      P  +     K+ Q +A  
Sbjct: 200 FDFEITLLTVSAVDGIHFCAPVG------HRQEKGDYRESWQPQVMSESALKKAQDVAAK 253

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP---GM 268
              A+G  G+   +         + + E++ +P   GM
Sbjct: 254 IVTALGGYGLFGVELFV--CGDDIIFNEVSPRPHDTGM 289


>gi|327543249|gb|EGF29683.1| pyruvate carboxylase [Rhodopirellula baltica WH47]
          Length = 1166

 Score = 67.5 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 44/246 (17%), Positives = 92/246 (37%), Gaps = 22/246 (8%)

Query: 34  SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDK 93
           S +++D  VGL L H   D      +G   E+      L    I +      +     DK
Sbjct: 76  SYLNIDAIVGLCLKH-HIDAVHPG-YGFLSENPEFAKALTNAGILFVGPSEQSLRDLGDK 133

Query: 94  MRSKQVVSSCGVPV----CPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS 149
             ++++    GVPV      ++   +   D+   +  P ++K  KGG   G+ V+ +   
Sbjct: 134 TSARRLAEIAGVPVLGGTAQAVASLKEATDAAEKLGYPIMLKAAKGGGGRGMRVVMEPSE 193

Query: 150 IPLDLLQSSSWNH----GDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYEL 204
           +   L  +          D++ +E++V     L   ++GD   ++  +           +
Sbjct: 194 LASSLDSAQREAKTAFGSDEVFLERFVQRARHLEVQLLGDRHGNLVHLYE-----RDCSV 248

Query: 205 KYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCR--GI---SRSDFLFDPLSRKVF 258
           +        + PA  +  ++   +   A    +A+G    G       +FL D    + +
Sbjct: 249 QRRHQKVVELAPAPNLSTEMRDAICDAALRIGRAVGKESGGYENAGTVEFLLDVDKDEFY 308

Query: 259 WLEINV 264
           ++E+N 
Sbjct: 309 FIEVNP 314


>gi|322834708|ref|YP_004214735.1| acetyl-CoA carboxylase, biotin carboxylase [Rahnella sp. Y9602]
 gi|321169909|gb|ADW75608.1| acetyl-CoA carboxylase, biotin carboxylase [Rahnella sp. Y9602]
          Length = 449

 Score = 67.5 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 43/222 (19%), Positives = 84/222 (37%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         L  DK+ + Q + + GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAEQVERSGFIFIGPKAETIRLMGDKVSAIQAMKAAGVPCVPGSDG 136

Query: 112 -LVNRFTMD--SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
            L +    +      I  P +IK   GG   G+ V++ D+ +   +     ++ +  + D
Sbjct: 137 PLGDDMDQNRAFAKRIGYPVIIKASGGGGGRGMRVVRGDKDLEQSINMTRAEAKAAFNND 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+Y++    +   V+ D   +   +A           K          PA  I  D
Sbjct: 197 MVYMEKYLENPRHVEIQVLADGQGNAVYLAERDCSMQRRHQK-----VVEEAPAPGITED 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + + +      A   IG RG    +FL+   + + F++E+N 
Sbjct: 252 LRRFIGERCAKACVDIGYRGAGTFEFLY--ENGEFFFIEMNT 291


>gi|307129035|ref|YP_003881051.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Dickeya
           dadantii 3937]
 gi|306526564|gb|ADM96494.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Dickeya
           dadantii 3937]
          Length = 447

 Score = 67.5 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 81/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         L  DK+ +   +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAEQVERSGFIFIGPRADTIRLMGDKVSAISAMKKAGVPCVPGSDG 136

Query: 112 -LVNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
            L +    +      I  P +IK   GG   G+ V++ ++ +   +     ++ +  + D
Sbjct: 137 PLGDDMDKNRAIGKRIGYPVIIKASGGGGGRGMRVVRSEKELEQSIAMTRAEAKAAFNND 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+Y++    +   V+ D   +   +A           K          PA  I  D
Sbjct: 197 MVYMEKYLENPRHVEIQVLADGQGNAIYLAERDCSMQRRHQK-----VVEEAPAPGITAD 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + + +      A   I  RG    +FLF   + + +++E+N 
Sbjct: 252 LRRYIGERCAKACVDINYRGAGTFEFLF--ENGEFYFIEMNT 291


>gi|298377508|ref|ZP_06987460.1| ATP-grasp domain protein [Bacteroides sp. 3_1_19]
 gi|298265527|gb|EFI07188.1| ATP-grasp domain protein [Bacteroides sp. 3_1_19]
          Length = 325

 Score = 67.5 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 40/197 (20%), Positives = 71/197 (36%), Gaps = 24/197 (12%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL--ISPPYV 129
              L +    S      +S+DK++  + +++ G     S            L  IS P  
Sbjct: 98  FAALSVKVIGSSYELCEMSLDKIQMYEWLTTHGYKTAKSYTDKSVFFKDIELGKISYPVF 157

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA-SLD 188
           +KP++G +SL I  +   ++I L       + H D L+I++++DG E+   V  D  S +
Sbjct: 158 VKPVRGSASLAISKVNDKETIEL------LFAHADNLMIQEFLDGQEIGADVYIDMLSGE 211

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           V  I   +        K                  ++  + R    A    G RG    D
Sbjct: 212 VVSIFTKR--------KIVMRAGETDKAVSFKDEKLFCLINRFVKEA----GYRGQIDID 259

Query: 248 FLFDPLSRKVFWLEINV 264
                +    +  E+N 
Sbjct: 260 IF--EIGGDYYISEVNP 274


>gi|11869927|gb|AAG40563.1|AF062308_1 acetyl-CoA carboxylase 1 [Arabidopsis thaliana]
 gi|600178|gb|AAC41645.1| acetyl-CoA carboxylase [Arabidopsis thaliana]
 gi|1090217|prf||2018327A Ac-CoA carboxylase
          Length = 2254

 Score = 67.5 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 37/241 (15%), Positives = 79/241 (32%), Gaps = 31/241 (12%)

Query: 50  KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109
           + D  +    G+  E+  +   L+   I +      + A   DK+ S  +  +  VP  P
Sbjct: 120 RVDAVWPG-WGHASENPELPDALDAKGIIFLGPPASSMAALGDKIGSSLIAQAADVPTLP 178

Query: 110 S-------------------------ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
                                     +      + S  ++  P +IK   GG   GI  +
Sbjct: 179 WSGSHVKIPPNSNLVTIPEEIYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKV 238

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYE 203
             D  +     Q      G  + I +       L   ++ D   +V+ +           
Sbjct: 239 HNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDKHGNVSALHSRDCSVQRRH 298

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            K        V P     +  K++++ A    +++   G +  ++L+   + + ++LE+N
Sbjct: 299 QKIIEEGPITVAP----PETVKKLEQAARRLAKSVNYVGAATIEYLYSMDTGEYYFLELN 354

Query: 264 V 264
            
Sbjct: 355 P 355


>gi|319744337|gb|EFV96699.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus
           agalactiae ATCC 13813]
          Length = 456

 Score = 67.5 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 74/220 (33%), Gaps = 16/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  FG   E+     + E + + +            DK+ ++  +    VPV P    
Sbjct: 77  AVHPGFGFLSENSKFATMCEEMNLKFIGPSGEVMDKMGDKINARAEMIKADVPVIPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
            +      +     I  P ++K   GG   GI  +K    +         ++ +      
Sbjct: 137 QVTSVEEAVSIAEEIGYPLMLKASAGGGGKGIRKVKSADELKPAFESASQEALAAFGNGA 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+ +     +   ++GD+   +  +            K             I   + 
Sbjct: 197 MYIEKVIYPARHIEVQILGDSFGKIVHLGERDCSLQRNNQKVL----EESPSVAIGNTLR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +++   A  A +A+        +FL D  S + +++E+N 
Sbjct: 253 QQIGEAAVRAAEAVSYENAGTIEFLLDENSGQFYFMEMNT 292


>gi|262371952|ref|ZP_06065231.1| carbamoyl-phosphate synthase, large subunit [Acinetobacter junii
           SH205]
 gi|262311977|gb|EEY93062.1| carbamoyl-phosphate synthase, large subunit [Acinetobacter junii
           SH205]
          Length = 1077

 Score = 67.5 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 27/196 (13%), Positives = 74/196 (37%), Gaps = 8/196 (4%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYV 129
           LE    P   +   A   + D+ R +Q++    +    + +V            +  P V
Sbjct: 653 LEEAGTPIIGTSPDAIDRAEDRERFQQMIQRLQLRQPNNSIVKSAEEGISEAAKVGYPLV 712

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  ++ +   L ++   ++   +L+++++ D  E+    + D    
Sbjct: 713 VRPSYVLGGRAMEIVYNEEELKRYLREAVQASNEAPVLLDRFLDDATEVDVDCVSDGKDV 772

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           V    +   +       +S  ++  + P  +  ++  E++R      + +G  G+    F
Sbjct: 773 VIGGIMQHIEQAGI---HSGDSACSIPPYSLSQEVQDEMRRQTVAMAKELGVVGLMNVQF 829

Query: 249 LFDPLSRKVFWLEINV 264
                   ++ LE+N 
Sbjct: 830 AV--KGNDIYVLEVNP 843



 Score = 65.1 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 45/278 (16%), Positives = 94/278 (33%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D              ++V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPSMADATYIEPITWQTVAQIIEKERPDAVLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      ILE   +    +   A   + D+      +   G+    + +
Sbjct: 89  TMGGQTALNCALALDANGILEKYNVELIGASKEAIEKAEDRKLFDIAMRKIGLECPRADV 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  ++ Q     P +I+P       G  +    +       +    +   QLLI++
Sbjct: 149 AESMEHALEIQARFGFPVIIRPSFTMGGSGGGIAYNKEEFIEICERGFDLSPTKQLLIDE 208

Query: 171 YVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + + +   A+   D           +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCAIENFDPMGVHT----GDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P   ++  +E+N 
Sbjct: 265 RNASVAVLREIGVETGGSNVQFGINPKDGRMVVIEMNP 302


>gi|170017351|ref|YP_001728270.1| carbamoylphosphate synthase large subunit (split gene in MJ)
           [Leuconostoc citreum KM20]
 gi|226700933|sp|B1MZ74|CARB_LEUCK RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|169804208|gb|ACA82826.1| Carbamoylphosphate synthase large subunit (split gene in MJ)
           [Leuconostoc citreum KM20]
          Length = 1059

 Score = 67.5 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/196 (14%), Positives = 69/196 (35%), Gaps = 9/196 (4%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           LE   +    + +     + D+    QV+ +  +P             +++   I  P +
Sbjct: 646 LEENGVNILGTTVDDLNRAEDREAFDQVIKTLALPQPVGKTATTVDGALNAAQAIGYPVL 705

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           I+P        + ++  D  +   + ++   ++   +LI+ Y+ G E    V+ D    V
Sbjct: 706 IRPSYVLGGRAMEIVSSDDELQDYMQRAVKVSNDHPVLIDSYLVGQEAEVDVLSDGETAV 765

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               +   +           +S  V P + +   +  E+   A    +A+   G+    F
Sbjct: 766 IPGIMEHIERAGVHS----GDSMSVYPPQYLSQKVQDEMTAAAINLAKAMNTIGLMNVQF 821

Query: 249 LFDPLSRKVFWLEINV 264
           +        + +E+N 
Sbjct: 822 VIH--DNTAYVIEVNP 835



 Score = 65.9 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 48/286 (16%), Positives = 100/286 (34%), Gaps = 33/286 (11%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQIDVDRS---------------------VGLV 45
           G ++E + S   G   A +L++ G+ V  ++ + +                     +  +
Sbjct: 21  GQAAEFDYS---GTQAALSLKEEGYYVILVNSNPATIMTDAEIADKVYIEPLSIDFIERI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           L   +PD     L G  G +         IL+ L I    + + A   + D+   K ++ 
Sbjct: 78  LRKERPDAILPTLGGQTGLNMAKNLSEAGILDELRIELLGTKLSAIEEAEDREEFKALME 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
               P+  S++       +D       P +++P       G  +    Q +         
Sbjct: 138 RLNEPIPESVIATTVEEAVDFADTHGYPVIVRPAYTLGGTGGGIAATHQELVDISANGLE 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   Q+LIE+ + G  E+   VM DA  +   + V   + +     ++  +        
Sbjct: 198 LSPVTQVLIERSIAGYKEIEFEVMRDAHDNA--LVVASMENFDPVGVHTGDSIVTAPVQT 255

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +     + ++  A    +A+   G        DP S K + +E+N 
Sbjct: 256 LSDREVQMMRDAALKIIRALKIEGGVNIQMALDPQSYKYYIIEVNP 301


>gi|150007088|ref|YP_001301831.1| carbamoyl phosphate synthase-like protein [Parabacteroides
           distasonis ATCC 8503]
 gi|149935512|gb|ABR42209.1| carbamoylphosphate synthase large subunit [Parabacteroides
           distasonis ATCC 8503]
          Length = 325

 Score = 67.5 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 40/197 (20%), Positives = 71/197 (36%), Gaps = 24/197 (12%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL--ISPPYV 129
              L +    S      +S+DK++  + +++ G     S            L  IS P  
Sbjct: 98  FAALSVKVIGSSYELCEMSLDKIQMYEWLTTHGYKTAKSYTDKSVFFKDIELGKISYPVF 157

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA-SLD 188
           +KP++G +SL I  +   ++I L       + H D L+I++++DG E+   V  D  S +
Sbjct: 158 VKPVRGSASLAISKVNDKETIEL------LFAHADNLMIQEFLDGQEIGADVYIDMLSGE 211

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           V  I   +        K                  ++  + R    A    G RG    D
Sbjct: 212 VVSIFTKR--------KIVMRAGETDKAVSFKDEKLFCLINRFVKEA----GYRGQIDID 259

Query: 248 FLFDPLSRKVFWLEINV 264
                +    +  E+N 
Sbjct: 260 IF--EIGGDYYISEVNP 274


>gi|307719965|ref|YP_003891105.1| formate-dependent phosphoribosylglycinamide formyltransferase
           [Sulfurimonas autotrophica DSM 16294]
 gi|306978058|gb|ADN08093.1| formate-dependent phosphoribosylglycinamide formyltransferase
           [Sulfurimonas autotrophica DSM 16294]
          Length = 387

 Score = 67.5 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 37/246 (15%), Positives = 84/246 (34%), Gaps = 22/246 (8%)

Query: 31  FKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAIL--ELLEIPYTHSGILASA 88
             V+ +D D ++  ++   KPD     +         + A+   E        +    S 
Sbjct: 56  HVVNMLDKD-ALLEIIYREKPDYILPEIEAIN-----IDALFAAEDRGYNVIPNANAVSK 109

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
               K          G+   P   V      +++   +  P V+KP+   S  G  + K 
Sbjct: 110 TMNRKNIRTFAAEVLGLKTGPYKFVTTQEGMLEAARELGFPCVMKPVMSSSGHGQSIAKS 169

Query: 147 DQSIPLDLLQS-SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205
           ++ IP    ++  +     +L++E +VD       +      +         +    +  
Sbjct: 170 EEDIPASWEEAKEARGDASELIVEAFVDFDYEITMLTARNGKETVFCEPIGHEQRDGDYV 229

Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +S        P ++     +  Q++A      +G +G+   +        +V++ E++ +
Sbjct: 230 FSW------QPMQMSEAAKQNAQKIAKEITDGLGGQGLFGVELFV--KGDEVYFSEVSPR 281

Query: 266 P---GM 268
           P   GM
Sbjct: 282 PHDTGM 287


>gi|149200147|ref|ZP_01877171.1| phosphoribosylaminoimidazole carboxylase ATPase subunit
           [Lentisphaera araneosa HTCC2155]
 gi|149136788|gb|EDM25217.1| phosphoribosylaminoimidazole carboxylase ATPase subunit
           [Lentisphaera araneosa HTCC2155]
          Length = 372

 Score = 67.5 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 45/199 (22%), Positives = 89/199 (44%), Gaps = 16/199 (8%)

Query: 70  AILELLEIPY-THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPY 128
           A++EL +  +  H      ++  DK+  KQ +   G+     I +             P 
Sbjct: 77  ALIELSDQGHEIHPDPRVLSVIQDKLLQKQCIEEAGLSTPAFIELTEDA--DFAKFGFPL 134

Query: 129 VIKPLKGG-SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL 187
           V K  KGG    G++V+K + ++   L          + ++E+ VD  E+  GVM    +
Sbjct: 135 VQKTRKGGYDGKGVLVMKDESALVEKL--------PGECMLEKMVDL-EMELGVMVARGI 185

Query: 188 DVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           D   ++ P ++  +++ + + L+   ++PA+I  D+  + + LA    +A+G  GI   +
Sbjct: 186 DGELVSYPVTE-MTFDDRSNILD-LCIVPARISADLEVKARTLAEKTIEALGGVGIYGVE 243

Query: 248 FLFDPLSRKVFWLEINVQP 266
              D    +VF  E+  +P
Sbjct: 244 MFVDKQ-GEVFVNEVAPRP 261


>gi|325117558|emb|CBZ53110.1| hypothetical protein NCLIV_028990 [Neospora caninum Liverpool]
          Length = 1240

 Score = 67.5 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 75/220 (34%), Gaps = 20/220 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+    A +E   I           L  DK+ ++       V   P    
Sbjct: 134 AIHPGYGFLSENAEFAAAVEDAGIMLVGPPPEVIRLMGDKVEARSTAEKANVQAVPGTNE 193

Query: 112 LVNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
            V  F   ++    I  P ++K   GG   G+  + ++  +         ++ +      
Sbjct: 194 PVTNFDEAAEVCRQIGFPVMLKAAYGGGGRGMRRVFREDELKEAFERATSEAKAAFGNGA 253

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           + +E+ V  G+ +   +MGD    V              ++        V PA  +   +
Sbjct: 254 MFVEKLVQHGVHIEVQIMGDHYGHVV-----HLHERDCTVQRRHQKVIEVAPAPFLAPRV 308

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            + +   A    Q++  +     +FL      + +++E+N
Sbjct: 309 RERILADAVKLAQSVNYQNAGTVEFLV--EGDEHYFIEVN 346


>gi|297529434|ref|YP_003670709.1| acetyl-CoA carboxylase, biotin carboxylase [Geobacillus sp. C56-T3]
 gi|297252686|gb|ADI26132.1| acetyl-CoA carboxylase, biotin carboxylase [Geobacillus sp. C56-T3]
          Length = 451

 Score = 67.5 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 34/221 (15%), Positives = 81/221 (36%), Gaps = 18/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     +     + +      A A    K  +++ +   GVP+ P    
Sbjct: 77  AIHPGYGFLAENEAFAELCRECNVTFIGPSPEAIAKMGMKDIARETMREAGVPIVPGSRG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGD 164
            I            I  P +IK   GG   GI V + +  +   +       ++++    
Sbjct: 137 VIESLDEARAIAEEIGYPVIIKATAGGGGKGIRVARDEGELVKSINITQQEAATAFG-NP 195

Query: 165 QLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            + IE+Y++    +   V+ D+  +   +            K             +  ++
Sbjct: 196 GVYIEKYIEDFRHVEIQVLADSYGNTIHLGERDCSIQRRLQK----LVEEAPSPALDDEM 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +++   A  A +A+   G    +F++D  +++ +++E+N 
Sbjct: 252 RRKMGEAAVKAAKAVNYTGAGTVEFIYDHRNKQFYFMEMNT 292


>gi|296158200|ref|ZP_06841032.1| carbamoyl-phosphate synthase, large subunit [Burkholderia sp.
           Ch1-1]
 gi|295891536|gb|EFG71322.1| carbamoyl-phosphate synthase, large subunit [Burkholderia sp.
           Ch1-1]
          Length = 1084

 Score = 67.5 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 26/203 (12%), Positives = 73/203 (35%), Gaps = 13/203 (6%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQHLISPPYV 129
           LE   +P   +       + D+ R ++++   G+   P+         +     I  P V
Sbjct: 655 LEANGVPIVGTSPDMIDAAEDRERFQKLLQDLGLRQPPNRTARAEDEALKLADEIGYPLV 714

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++ + + +   + ++   ++   +L+++++ D IE     + D    
Sbjct: 715 VRPSYVLGGRAMEIVHEPRDLERYMREAVKVSNDSPVLLDRFLNDAIECDVDCISDGEAV 774

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                +   +       +S  ++  + P  +  +   E++R      +A+   G+    F
Sbjct: 775 FIGGVMEHIEQAGV---HSGDSACSLPPYSLSKETVAELKRQTGAMARALNVVGLMNVQF 831

Query: 249 LFD-------PLSRKVFWLEINV 264
                          ++ LE+N 
Sbjct: 832 AIQQVPQADGSKEDVIYVLEVNP 854



 Score = 62.4 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 49/285 (17%), Positives = 94/285 (32%), Gaps = 42/285 (14%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +              DV          V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYKVILVNSNPATIMTDPNTADVTYIEPITWEVVERIIAKERPDAILP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      +LE  ++    +   A   + D+ + K  ++  G+    S  
Sbjct: 89  TMGGQTALNCALDLHAHGVLEKYKVELIGASPEAIDKAEDRQKFKDAMTKIGLGSAKSGT 148

Query: 113 VNRFTMDSQHLI---------SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
            +      Q              P VI+P       G  +            +    +  
Sbjct: 149 AHSMEEALQVQAEIAAQTGSGGYPVVIRPSFTLGGSGGGIAYNRDEFEEICKRGLDLSPT 208

Query: 164 DQLLIEQYVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IP 220
            +LLIE+ + G  E    V+ D   + +   ++   D           +S  V PA+ + 
Sbjct: 209 RELLIEESLLGWKEYEMEVVRDKKDNCIIVCSIENLDPMGIHT----GDSITVAPAQTLT 264

Query: 221 LDIYKEVQRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
              Y+ ++  +    + IG   G S   F  +P   ++  +E+N 
Sbjct: 265 DKEYQILRNASLAVLREIGVDTGGSNVQFSINPKDGRMIVIEMNP 309


>gi|257482272|ref|ZP_05636313.1| carbamoyl phosphate synthase large subunit [Pseudomonas syringae
           pv. tabaci ATCC 11528]
 gi|331011487|gb|EGH91543.1| carbamoyl phosphate synthase large subunit [Pseudomonas syringae
           pv. tabaci ATCC 11528]
          Length = 1073

 Score = 67.5 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/196 (14%), Positives = 75/196 (38%), Gaps = 8/196 (4%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYV 129
           LE   +P   +   A   + D+ R +Q+V    +   P+  V        +   I  P V
Sbjct: 653 LEAAGVPIIGTSPDAIDRAEDRERFQQMVERLNLRQPPNATVRSEDEAIRAAAKIGYPLV 712

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLD 188
           ++P        + ++ ++  +   L ++   ++   +L++ +++  IE+    + D +  
Sbjct: 713 VRPSYVLGGRAMEIVYQEDELKRYLREAVQVSNDSPVLLDHFLNCAIEMDVDAVCDGTDV 772

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           V    +   +       +S  ++  + P  +P  I  E++         +G  G+   + 
Sbjct: 773 VIGAIMQHIEQAGV---HSGDSACSLPPYSLPAHIQDEMREQVKKMALELGVVGL--MNV 827

Query: 249 LFDPLSRKVFWLEINV 264
                   ++ +E+N 
Sbjct: 828 QLALQGEDIYVIEVNP 843



 Score = 63.2 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 96/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +              D         ++V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPAMADATYIEPIKWQTVAKIIEKERPDALLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +    + +LE   +    +       + D+ R  + + S G+    S +
Sbjct: 89  TMGGQTALNCALDLEREGVLEKFGVEMIGANADTIDKAEDRSRFDKAMKSIGLACPRSGI 148

Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     +     +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHSMEEANAVLEKLGFPCIIRPSFTMGGTGGGIAYNREEFEEICARGLDLSPTKELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D   + +   ++   D           +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKKDNCIIVCSIENFDPMGVHT----GDSITVAPAQTLTDKEYQIL 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F   P + ++  +E+N 
Sbjct: 265 RNASLAVLREIGVETGGSNVQFGICPDTGRMVVIEMNP 302


>gi|124027199|ref|YP_001012519.1| carbamoyl phosphate synthase large subunit [Hyperthermus butylicus
           DSM 5456]
 gi|167006440|sp|A2BJL3|CARB_HYPBU RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|123977893|gb|ABM80174.1| Carbamoyl-phosphate synthase large chain [Hyperthermus butylicus
           DSM 5456]
          Length = 1073

 Score = 67.5 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 50/321 (15%), Positives = 108/321 (33%), Gaps = 50/321 (15%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G +   ++ +                       V  V+   +PD    
Sbjct: 29  SGSQALKALREEGIETVLVNPNVATIQTSYKLADHVYLGPLQPWFVEKVIERERPDAILL 88

Query: 57  VLHG----NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
              G    + G +   + IL    I    + I     ++ + + ++ +   G+PV PS  
Sbjct: 89  GFGGQTALSLGVELHRRGILSRYGIRVLGTPIEGIEKALSRGKFRETMMKAGLPVPPSTP 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  + + + I  P +++        G +V    + +   L+++ +++   ++L+E+
Sbjct: 149 ATSVEEALRAANEIGYPVIVRVSFNLGGGGSLVAWSREELERWLVRAFAFSGTGEVLVEK 208

Query: 171 YV---DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKE 226
           Y+     IE         ++              +     +  S  + P + +    Y+ 
Sbjct: 209 YLHYWKEIEYEVVRDQYGNMVAVACLENADPMGVH-----TGESVVIAPCQTLTDQEYQL 263

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSR-KVFWLEINVQPGMTPVSI-------FPEMA 278
           ++  +    +AIG  G        +P    + + +E    P M+  S        +P   
Sbjct: 264 LREASLRVAEAIGLVGEGNVQLALNPRDSWEYYVIE--TNPRMSRSSALASKATGYPLAY 321

Query: 279 AYA----GYSFRELLLWMVED 295
             A    GY   ELL  + E 
Sbjct: 322 IAAKLALGYRLDELLNRVTER 342



 Score = 55.1 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/199 (15%), Positives = 75/199 (37%), Gaps = 17/199 (8%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           LE   +    +   +   + ++    Q++   G+        +     +     +  P +
Sbjct: 656 LEERGVRLLGTPGRSVDRAENRAWFSQLLEELGIKQPSWTAASSIEEVLKFAESVGYPVL 715

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDA--- 185
           ++P    S   + +    + +   + Q++  +    +++ +++ D +E     +GD+   
Sbjct: 716 VRPSYVLSGSAMKIAWSPEELKSYIEQAARVSPRYPVVVSKFLEDAVEAEIDAVGDSRRT 775

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGIS 244
              V E   P            S +ST V+P   +P    +E+ R+A   ++ +  +G  
Sbjct: 776 VGTVIEHVEPGGVH--------SGDSTMVIPWFSLPETAVREMIRIAETLNEVLEIKGPF 827

Query: 245 RSDFLFDPLSRKVFWLEIN 263
              FL       V+ +E+N
Sbjct: 828 NIQFLV--KDGSVYVVELN 844


>gi|52307895|gb|AAU38395.1| AccC protein [Mannheimia succiniciproducens MBEL55E]
          Length = 467

 Score = 67.5 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 81/221 (36%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E+    +         L  DK+ +   +   GVP  P    
Sbjct: 96  AIHPGYGFLSENADFAEQVEVSGFTFIGPTADVIRLMGDKVSAINAMKKAGVPCVPGSDG 155

Query: 112 ---LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
                        + I  P +IK   GG   G+ V++ D+S+   +     ++ +  + D
Sbjct: 156 PLGTDMVKNKQIANRIGYPVIIKASGGGGGRGMRVVRNDESLEESIAMTKAEAKAAFNND 215

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            + +E+Y++    +   V+ D   +   +A           K             I  +I
Sbjct: 216 MVYMEKYLENPRHVEIQVIADTHGNAVYLAERDCSMQRRHQKVL----EEAPAPGITEEI 271

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +++ +    A   IG RG    +FL+     K +++E+N 
Sbjct: 272 RRDIGQRCANACIEIGYRGAGTFEFLY--EDGKFYFIEMNT 310


>gi|23098535|ref|NP_692001.1| arginine specific carbamoyl-phosphate synthase large chain
           [Oceanobacillus iheyensis HTE831]
 gi|22776761|dbj|BAC13036.1| arginine specific carbamoyl-phosphate synthase large chain
           [Oceanobacillus iheyensis HTE831]
          Length = 1075

 Score = 67.5 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 58/310 (18%), Positives = 114/310 (36%), Gaps = 44/310 (14%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           S  A   AL+ AG++   I+ +                       V  V+   K D    
Sbjct: 578 SVHAV-QALQKAGYETIMINNNPETVSTDYSVADKLYFEPLALEDVLHVIEKEKVDGVML 636

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN-- 114
              G    +  +   LE   IP   +         D+ +  Q ++  G+P     +V+  
Sbjct: 637 QFGGQTAIN--LANELEKEGIPLLGTKPKEIDQMEDREQFYQFLNQLGIPHIKGEIVHNQ 694

Query: 115 RFTMDSQHLISPPYVIKPLK--GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
           +  + +   +  P +I+P    GG S+ I   +KD    +  +Q  + +    LLI+ Y+
Sbjct: 695 KEVISTVKDLGFPVLIRPSYVIGGQSMYICYNEKDLLSYVSKIQEDTHDRCWPLLIDDYL 754

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLA 231
            G+E    V+ D       I +P    +  +    S +S  V P  ++  +  + +  +A
Sbjct: 755 PGMEYDVDVISDGE----NIVIPGIVEHIEKAGVHSGDSIGVFPPRELKSEQQERMIEIA 810

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM-AA---YAG 282
                 +   GI    F+    +  ++ LE+N       P ++ V+  P +  A     G
Sbjct: 811 KQIAGKLPIVGIMNIQFVIHHQT--IYVLEVNPRASRTVPVISKVTGVPMIEWAVYSQLG 868

Query: 283 YSFRELLLWM 292
           Y   +++  +
Sbjct: 869 YPLTDIVSKV 878



 Score = 58.2 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 49/274 (17%), Positives = 103/274 (37%), Gaps = 33/274 (12%)

Query: 20  KACASALEDAGFKVSQIDV---------------------DRSVGLVLAHLKPDLAFNVL 58
           +AC  AL+D G +V  ++                        ++  ++   KPD     L
Sbjct: 32  QACL-ALKDEGIEVVLVNNNPATIMTDEQIADNVYLEPLNKETLVKIIEKEKPDGLIGTL 90

Query: 59  HGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
            G  G +  ++     ILE  E+    + + +     D+ + ++++     P+  S +V 
Sbjct: 91  GGQTGLNLSIELFEAGILEKYEVELLGTSVDSIQKGEDREKFRELMIEINEPISESKIVT 150

Query: 115 RFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                +     I  P +++P       G      +      L +    +   Q+L+E+ +
Sbjct: 151 NVEEGLRFIDQIGFPIILRPAYTLGGEGGGFAHNEAEFEELLNRGLGLSPIHQVLVEKSI 210

Query: 173 DG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRL 230
            G  E+   VM DA+   T I V   +       ++  +S  V P++ +    Y+ ++  
Sbjct: 211 KGWKEVEYEVMRDAND--TCIIVCNMENMDPVGVHT-GDSIVVAPSQTLTDHQYQMLRSA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +    +A+   G     F  +P S +   +E+N 
Sbjct: 268 SVKVIRALNVVGGCNIQFALNPDSNEYCIIEVNP 301


>gi|22536535|ref|NP_687386.1| acetyl-CoA carboxylase biotin carboxylase subunit [Streptococcus
           agalactiae 2603V/R]
 gi|25010413|ref|NP_734808.1| acetyl-CoA carboxylase biotin carboxylase subunit [Streptococcus
           agalactiae NEM316]
 gi|76787868|ref|YP_329073.1| acetyl-CoA carboxylase biotin carboxylase subunit [Streptococcus
           agalactiae A909]
 gi|76798478|ref|ZP_00780715.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus
           agalactiae 18RS21]
 gi|76799001|ref|ZP_00781199.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus
           agalactiae 18RS21]
 gi|76799392|ref|ZP_00781546.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus
           agalactiae 18RS21]
 gi|77406538|ref|ZP_00783589.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus
           agalactiae H36B]
 gi|77411460|ref|ZP_00787805.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus
           agalactiae CJB111]
 gi|22533368|gb|AAM99258.1|AE014207_19 acetyl-CoA carboxylase, biotin carboxylase [Streptococcus
           agalactiae 2603V/R]
 gi|23094765|emb|CAD45984.1| Unknown [Streptococcus agalactiae NEM316]
 gi|76562925|gb|ABA45509.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus
           agalactiae A909]
 gi|76585260|gb|EAO61864.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus
           agalactiae 18RS21]
 gi|76585651|gb|EAO62211.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus
           agalactiae 18RS21]
 gi|76586179|gb|EAO62700.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus
           agalactiae 18RS21]
 gi|77162463|gb|EAO73429.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus
           agalactiae CJB111]
 gi|77174845|gb|EAO77663.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus
           agalactiae H36B]
          Length = 456

 Score = 67.5 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 74/220 (33%), Gaps = 16/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  FG   E+     + E + + +            DK+ ++  +    VPV P    
Sbjct: 77  AVHPGFGFLSENSKFATMCEEMNLKFIGPSGEVMDKMGDKINARTEMIKADVPVIPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
            +      +     I  P ++K   GG   GI  +K    +         ++ +      
Sbjct: 137 QVTSVEEAVSIAEEIGYPLMLKASAGGGGKGIRKVKSADELKPAFESASQEALAAFGNGA 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+ +     +   ++GD+   +  +            K             I   + 
Sbjct: 197 MYIEKVIYPARHIEVQILGDSFGKIVHLGERDCSLQRNNQKVL----EESPSVAIGNTLR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +++   A  A +A+        +FL D  S + +++E+N 
Sbjct: 253 QQIGEAAVRAAEAVSYENAGTIEFLLDENSGQFYFMEMNT 292


>gi|298488445|ref|ZP_07006476.1| Carbamoyl-phosphate synthase large chain [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
 gi|298157070|gb|EFH98159.1| Carbamoyl-phosphate synthase large chain [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
          Length = 1073

 Score = 67.5 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/196 (14%), Positives = 75/196 (38%), Gaps = 8/196 (4%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYV 129
           LE   +P   +   A   + D+ R +Q+V    +   P+  V        +   I  P V
Sbjct: 653 LEAAGVPIIGTSPDAIDRAEDRERFQQMVERLNLRQPPNATVRSEDEAIRAAAKIGYPLV 712

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLD 188
           ++P        + ++ ++  +   L ++   ++   +L++ +++  IE+    + D +  
Sbjct: 713 VRPSYVLGGRAMEIVYQEDELKRYLREAVQVSNDSPVLLDHFLNCAIEMDVDAVCDGTDV 772

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           V    +   +       +S  ++  + P  +P  I  E++         +G  G+   + 
Sbjct: 773 VIGAIMQHIEQAGV---HSGDSACSLPPYSLPAHIQDEMREQVKKMALELGVVGL--MNV 827

Query: 249 LFDPLSRKVFWLEINV 264
                   ++ +E+N 
Sbjct: 828 QLALQGEDIYVIEVNP 843



 Score = 63.2 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 96/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +              D         ++V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPAMADATYIEPIKWQTVAKIIEKERPDALLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +    + +LE   +    +       + D+ R  + + S G+    S +
Sbjct: 89  TMGGQTALNCALDLEREGVLEKFGVEMIGANADTIDKAEDRSRFDKAMKSIGLACPRSGI 148

Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     +     +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHSMEEANAVLEKLGFPCIIRPSFTMGGTGGGIAYNREEFEEICARGLDLSPTKELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D   + +   ++   D           +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKKDNCIIVCSIENFDPMGVHT----GDSITVAPAQTLTDKEYQIL 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F   P + ++  +E+N 
Sbjct: 265 RNASLAVLREIGVETGGSNVQFGICPDTGRMVVIEMNP 302


>gi|290893781|ref|ZP_06556760.1| pyruvate carboxylase [Listeria monocytogenes FSL J2-071]
 gi|290556608|gb|EFD90143.1| pyruvate carboxylase [Listeria monocytogenes FSL J2-071]
          Length = 1127

 Score = 67.5 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 36/243 (14%), Positives = 82/243 (33%), Gaps = 25/243 (10%)

Query: 35  QIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSM 91
            +D+  ++  +      D     +H  +G   E+       E   I +         +  
Sbjct: 44  YLDI-ENIIEIAKESGAD----AIHPGYGFLSENIEFARRCEQEGIIFVGPKSKHLDMFG 98

Query: 92  DKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK- 146
           DK+++K+      +PV P     +   +   +       P +IK   GG   G+ V++  
Sbjct: 99  DKIKAKEQALLADIPVIPGSNGPVAGIKEVEEFGEKNGYPLMIKASLGGGGRGMRVVESK 158

Query: 147 ---DQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSY 202
               +S      ++ +    D++ +E+ V +   +   ++GD   ++  +          
Sbjct: 159 EHVKESFERASSEAKAAFGNDEVYVEKCVMNPKHIEVQILGDTHGNIVHLFERDCSIQRR 218

Query: 203 ELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
             K        V P   I  D+   +   A    + +        +FL        +++E
Sbjct: 219 HQK-----VVEVAPCNAITSDLRNRICDAAVKLMKNVDYINAGTVEFLV--EGDDFYFIE 271

Query: 262 INV 264
           +N 
Sbjct: 272 VNP 274


>gi|289624591|ref|ZP_06457545.1| carbamoyl phosphate synthase large subunit [Pseudomonas syringae
           pv. aesculi str. NCPPB3681]
 gi|289646950|ref|ZP_06478293.1| carbamoyl phosphate synthase large subunit [Pseudomonas syringae
           pv. aesculi str. 2250]
 gi|330868235|gb|EGH02944.1| carbamoyl phosphate synthase large subunit [Pseudomonas syringae
           pv. aesculi str. 0893_23]
          Length = 1073

 Score = 67.5 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/196 (14%), Positives = 75/196 (38%), Gaps = 8/196 (4%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYV 129
           LE   +P   +   A   + D+ R +Q+V    +   P+  V        +   I  P V
Sbjct: 653 LEAAGVPIIGTSPDAIDRAEDRERFQQMVERLNLRQPPNATVRSEDEAIRAAAKIGYPLV 712

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLD 188
           ++P        + ++ ++  +   L ++   ++   +L++ +++  IE+    + D +  
Sbjct: 713 VRPSYVLGGRAMEIVYQEDELKRYLREAVQVSNDSPVLLDHFLNCAIEMDVDAVCDGTDV 772

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           V    +   +       +S  ++  + P  +P  I  E++         +G  G+   + 
Sbjct: 773 VIGAIMQHIEQAGV---HSGDSACSLPPYSLPAHIQDEMREQVKKMALELGVVGL--MNV 827

Query: 249 LFDPLSRKVFWLEINV 264
                   ++ +E+N 
Sbjct: 828 QLALQGEDIYVIEVNP 843



 Score = 63.2 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 96/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +              D         ++V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPAMADATYIEPIKWQTVAKIIEKERPDALLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +    + +LE   +    +       + D+ R  + + S G+    S +
Sbjct: 89  TMGGQTALNCALDLEREGVLEKFGVEMIGANADTIDKAEDRSRFDKAMKSIGLACPRSGI 148

Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     +     +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHSMEEANAVLEKLGFPCIIRPSFTMGGTGGGIAYNREEFEEICARGLDLSPTKELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D   + +   ++   D           +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKKDNCIIVCSIENFDPMGVHT----GDSITVAPAQTLTDKEYQIL 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F   P + ++  +E+N 
Sbjct: 265 RNASLAVLREIGVETGGSNVQFGICPDTGRMVVIEMNP 302


>gi|269126211|ref|YP_003299581.1| carbamoyl-phosphate synthase L chain ATP- binding protein
           [Thermomonospora curvata DSM 43183]
 gi|268311169|gb|ACY97543.1| Carbamoyl-phosphate synthase L chain ATP- binding protein
           [Thermomonospora curvata DSM 43183]
          Length = 652

 Score = 67.5 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 36/199 (18%), Positives = 79/199 (39%), Gaps = 14/199 (7%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI----LVNRFTMDSQHLISPPYVIK 131
            + +      A     DK+R+K+ V++ GVPV P      L +    ++   +  P ++K
Sbjct: 93  GLVFIGPPPEAIEAMGDKIRAKRTVAAAGVPVVPGRHEAGLSDAQLAEAALEVGLPVLLK 152

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQLLIEQYVD-GIELTCGVMGDAS 186
           P  GG   G+ ++++   +   +  +          D LL+E+++D    +   V  DA 
Sbjct: 153 PSAGGGGKGMRLVREPAHLHEAIAAARREARGAFGDDALLVERFIDNPRHIEIQVFADAF 212

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRS 246
            +V  +   +        K             +     +++   A  A +A+G  G    
Sbjct: 213 GNVVHLGERECSLQRRHQKI----VEEAPSPLLDEATREQMGAAAVAAARAVGYVGAGTV 268

Query: 247 DFLFDPLS-RKVFWLEINV 264
           +++      ++ ++LE+N 
Sbjct: 269 EYIVSADRPKEYYFLEMNT 287


>gi|260914500|ref|ZP_05920969.1| acetyl-CoA carboxylase [Pasteurella dagmatis ATCC 43325]
 gi|260631601|gb|EEX49783.1| acetyl-CoA carboxylase [Pasteurella dagmatis ATCC 43325]
          Length = 448

 Score = 67.5 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 83/222 (37%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         L  DK+ +   +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAEQVERSGFTFIGPTAEVIRLMGDKVSAINAMKKSGVPCVPGSDG 136

Query: 112 ---LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
                     +    I  P +IK   GG   G+ V+++++++   +     ++ +  + D
Sbjct: 137 PVGTDMAKNKEIAKRIGYPVIIKASGGGGGRGMRVVREERALEESIAMTKAEAKAAFNND 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+Y++    +   V+ D   +   +A           K          PA  I  +
Sbjct: 197 MVYMEKYLENPRHIEIQVLADTHGNAIYLAERDCSMQRRHQK-----VVEEAPAPGISEE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +++      A   IG RG    +FL+   + + +++E+N 
Sbjct: 252 VRRDIGARCAKACLEIGYRGAGTFEFLY--ENGEFYFIEMNT 291


>gi|226361373|ref|YP_002779151.1| glycinamide ribonucleotide transformylase PurT [Rhodococcus opacus
           B4]
 gi|226239858|dbj|BAH50206.1| glycinamide ribonucleotide transformylase PurT [Rhodococcus opacus
           B4]
          Length = 403

 Score = 67.5 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 48/277 (17%), Positives = 85/277 (30%), Gaps = 39/277 (14%)

Query: 19  GKACASALEDAGFKVSQID----------------VDRSVGLVL----AHLKPDLAFNVL 58
           GK    AL+  G +V  +D                +D S    L       +P      +
Sbjct: 29  GKEVIIALQRLGVEVIAVDRYDNAPGHQVAHRAHTIDMSDPEALLRLVDAEQPHFVVPEI 88

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKM-RSKQVVSSCGVPVCPSILVNRFT 117
                 D L  A +E            A+ L+M++    +      G+P  P        
Sbjct: 89  EAI-ATDAL--ATVEERGAAVVVPTARATQLTMNREGIRRLAAEELGLPTSPYEFAESLA 145

Query: 118 M--DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH--GDQLLIEQYVD 173
               +   I  P VIKP+   S  G   ++    +      + +       ++++E +VD
Sbjct: 146 EVRAATDRIGFPCVIKPVMSSSGKGQSTVRGADDVEKAWEYALAGGRVNHGRVIVEGFVD 205

Query: 174 ----GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
                 +LT   +G      T    P           S        P  +        + 
Sbjct: 206 FDYEITQLTVRAIGGDGEVGTFFCEPIGHLQD-----SGDYVESWQPQPMSDTALARSRE 260

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
           +A     A+G RGI   +         V++ E++ +P
Sbjct: 261 VAEKVTSALGGRGIFGVELFV--KGDDVYFSEVSPRP 295


>gi|157146495|ref|YP_001453814.1| hypothetical protein CKO_02255 [Citrobacter koseri ATCC BAA-895]
 gi|157083700|gb|ABV13378.1| hypothetical protein CKO_02255 [Citrobacter koseri ATCC BAA-895]
          Length = 314

 Score = 67.5 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 42/203 (20%), Positives = 86/203 (42%), Gaps = 21/203 (10%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGV--PVCPSILVNRFTMDSQHLISP-PY 128
            E+L   Y  +  +A   + DK+RS Q+++  G+  PV         T D   ++   P 
Sbjct: 94  FEMLG-SYPLNESVAITRARDKLRSLQLLARQGIDLPVTGIAHSPDDTSDLIDMVGGAPL 152

Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD---GIELTCGVMGDA 185
           V+K ++G   +G+++ +  Q+     +  +       +L+++Y+    G ++ C V+GD 
Sbjct: 153 VVKLVEGTQGIGVVLAETRQAAES--VIDAFRGLNAHILVQEYIKEARGRDIRCLVVGDE 210

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
            +   E    + DF S   +    +   + P +         + +A  A Q +G   ++ 
Sbjct: 211 VVAAIERRAKEGDFRSNLHRGGMASIASITPRE---------REIAIKAAQTMGL-DVAG 260

Query: 246 SDFLFDPLSRKVFWLEINVQPGM 268
            D       R    +E+N  PG+
Sbjct: 261 VD--ILRAERGPLVMEVNASPGL 281


>gi|145590410|ref|YP_001152412.1| alpha-L-glutamate ligase [Pyrobaculum arsenaticum DSM 13514]
 gi|145282178|gb|ABP49760.1| alpha-L-glutamate ligase, RimK family [Pyrobaculum arsenaticum DSM
           13514]
          Length = 264

 Score = 67.5 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 33/180 (18%), Positives = 77/180 (42%), Gaps = 21/180 (11%)

Query: 88  ALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147
           A S +K  +   + + G+P   + ++     +++  I  P ++K + G     + ++   
Sbjct: 78  ATSWNKAWTLARLQAAGLPTPKTRVL---FGEAEVAIDKPSIVKAVSGSWGRKVALVSAP 134

Query: 148 QSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
           + + L L  +     G+ LL+++ +  G ++   V+   ++       P  D+ S   + 
Sbjct: 135 EEVKLLLKSAE----GEVLLLQEMIGTGEDIRVFVIDGRAVAAMRRIPPAGDWRSNAAR- 189

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
               +T  +P KI  ++ +    LA  A +A+G    +  D L      +++  E+N  P
Sbjct: 190 --GGTT--VPQKIDPELEE----LAVKATEAVGAF-YAGVDILI---GDRLYVNEVNGIP 237


>gi|71064888|ref|YP_263615.1| 3-methylcrotonoyl-CoA carboxylase, alpha subunit [Psychrobacter
           arcticus 273-4]
 gi|71037873|gb|AAZ18181.1| 3-methylcrotonoyl-CoA carboxylase, alpha subunit [Psychrobacter
           arcticus 273-4]
          Length = 706

 Score = 67.5 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 39/224 (17%), Positives = 78/224 (34%), Gaps = 22/224 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       +   + +      A      K  SK+++ + GVP+ P    
Sbjct: 77  AIHPGYGFLSENADFAQACQDAGLVFIGPSADAIRAMGGKSESKRLMEAAGVPLIPGYHG 136

Query: 114 NRFTM----DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH-----GD 164
                         I  P +IK   GG   G+ ++++      DLL+S           D
Sbjct: 137 ENQDAQFLQQQADSIGYPVLIKASAGGGGKGMRIVEQPSDFI-DLLESCRREAITSFGND 195

Query: 165 QLLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
           Q+L+E+Y +    +   V GD   +               ++          PA  +   
Sbjct: 196 QVLVEKYALKPRHIEIQVFGDTHGNYV-----HLFERDCSVQRRHQKVLEEAPAPGVDTA 250

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR--KVFWLEINV 264
           + + +   A  A +A+   G    +F+ +        +++E+N 
Sbjct: 251 MREAMGTAAIEAARAVNYFGAGTVEFIVEQREGSMNFYFMEMNT 294


>gi|28871635|ref|NP_794254.1| carbamoyl-phosphate synthase, large subunit [Pseudomonas syringae
           pv. tomato str. DC3000]
 gi|213966658|ref|ZP_03394809.1| carbamoyl-phosphate synthase, large subunit [Pseudomonas syringae
           pv. tomato T1]
 gi|301383168|ref|ZP_07231586.1| carbamoyl phosphate synthase large subunit [Pseudomonas syringae
           pv. tomato Max13]
 gi|302063397|ref|ZP_07254938.1| carbamoyl phosphate synthase large subunit [Pseudomonas syringae
           pv. tomato K40]
 gi|302133770|ref|ZP_07259760.1| carbamoyl phosphate synthase large subunit [Pseudomonas syringae
           pv. tomato NCPPB 1108]
 gi|38257463|sp|Q87WP4|CARB_PSESM RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|28854887|gb|AAO57949.1| carbamoyl-phosphate synthase, large subunit [Pseudomonas syringae
           pv. tomato str. DC3000]
 gi|213928508|gb|EEB62052.1| carbamoyl-phosphate synthase, large subunit [Pseudomonas syringae
           pv. tomato T1]
          Length = 1073

 Score = 67.5 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/196 (14%), Positives = 75/196 (38%), Gaps = 8/196 (4%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYV 129
           LE   +P   +   A   + D+ R +Q+V    +   P+  V        +   I  P V
Sbjct: 653 LEAAGVPIIGTSPDAIDRAEDRERFQQMVERLNLRQPPNATVRSEDEAIRAAAKIGYPLV 712

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLD 188
           ++P        + ++ ++  +   L ++   ++   +L++ +++  IE+    + D +  
Sbjct: 713 VRPSYVLGGRAMEIVYQEDELKRYLREAVQVSNDSPVLLDHFLNCAIEMDVDAVCDGTDV 772

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           V    +   +       +S  ++  + P  +P  I  E++         +G  G+   + 
Sbjct: 773 VIGAIMQHIEQAGV---HSGDSACSLPPYSLPAHIQDEMREQVKKMALELGVVGL--MNV 827

Query: 249 LFDPLSRKVFWLEINV 264
                   ++ +E+N 
Sbjct: 828 QLALQGEDIYVIEVNP 843



 Score = 63.2 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 96/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +              D         ++V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPAMADATYIEPIKWQTVAKIIEKERPDALLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +    + +LE   +    +       + D+ R  + + S G+    S +
Sbjct: 89  TMGGQTALNCALDLEREGVLEKFGVEMIGANADTIDKAEDRSRFDKAMKSIGLACPRSGI 148

Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     +     +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHSMEEANAVLEKLGFPCIIRPSFTMGGTGGGIAYNREEFEEICARGLDLSPTKELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D   + +   ++   D           +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKKDNCIIVCSIENFDPMGVHT----GDSITVAPAQTLTDKEYQIL 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F   P + ++  +E+N 
Sbjct: 265 RNASLAVLREIGVETGGSNVQFGICPDTGRMVVIEMNP 302


>gi|283797347|ref|ZP_06346500.1| carbamoyl-phosphate synthase, large subunit [Clostridium sp. M62/1]
 gi|291075019|gb|EFE12383.1| carbamoyl-phosphate synthase, large subunit [Clostridium sp. M62/1]
 gi|295090497|emb|CBK76604.1| carbamoyl-phosphate synthase large subunit [Clostridium cf.
           saccharolyticum K10]
          Length = 1071

 Score = 67.5 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 44/276 (15%), Positives = 99/276 (35%), Gaps = 32/276 (11%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL   G+++  +              DV          +  ++   +PD    
Sbjct: 28  SGTQACKALRKLGYEIVLVNSNPATIMTDPETADVTYIEPLNVDRLTQIIEKERPDALLP 87

Query: 57  VLHGNFGEDGL----VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G  G +         +L+   +      + A     D+   K+ ++S G+ +  S +
Sbjct: 88  NLGGQSGLNLCSELAAAGVLDKYNVQVIGVQVDAIERGEDREEFKETMASLGIEMARSEV 147

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     +  P V++P       G  ++   + +     +    +   Q+L+E+
Sbjct: 148 AYSVEEALAIADKLGYPVVLRPAYTMGGEGGGLVYNVEELKTVCARGLQASMVGQVLVEE 207

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQ 228
            + G  EL   V+ D+  ++  +   ++      +   + +S    P   I  ++ K +Q
Sbjct: 208 SILGWEELELEVVRDSKNNMITVCFIEN---IDPVGVHTGDSFCSAPMLTISEEVQKRLQ 264

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             ++   +AI   G +   +  DP + +   +EIN 
Sbjct: 265 EKSYKIVEAIQVIGGTNVQWAHDPKTDRDIVIEINP 300



 Score = 60.1 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 39/263 (14%), Positives = 97/263 (36%), Gaps = 29/263 (11%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH-----GNFGEDG---- 66
           AL++ GF+   +         D D S  L    L  +   ++ H     G   + G    
Sbjct: 578 ALKELGFETIIVNCNPETVSTDYDTSDKLYFEPLTLEDVLSIYHKEKPLGVIAQFGGQTP 637

Query: 67  -LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-ILVN-RFTMDSQHL 123
             + A L+   +    +      ++ D+   + ++    +P+  S + VN    ++  + 
Sbjct: 638 LNLAADLKKYGVNILGTTPETIDMAEDRDLFRAMMDKLNIPMPESGMAVNVEEALEIANK 697

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVM 182
           I  P +++P       G+ V+  D+++   + Q+        +LI++++    E     +
Sbjct: 698 IGYPVMVRPSYVLGGRGMEVVHDDEAMSFYMQQAVGVTPDRPILIDRFLHHATECEADAI 757

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCR 241
            D         +   +           +S  +LP++ + +D  + ++       + +   
Sbjct: 758 SDGENVFVPAVMEHIELAGIHS----GDSACILPSRNLTMDQVETIKDYTSRIAKEMHVV 813

Query: 242 GISRSDFLFDPLSRKVFWLEINV 264
           G+   +  +     +V+ LE N 
Sbjct: 814 GL--MNMQYAIEDGEVYVLEANP 834


>gi|149184451|ref|ZP_01862769.1| carbamoyl-phosphate synthase large subunit [Erythrobacter sp.
           SD-21]
 gi|148831771|gb|EDL50204.1| carbamoyl-phosphate synthase large subunit [Erythrobacter sp.
           SD-21]
          Length = 1108

 Score = 67.5 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 43/220 (19%), Positives = 92/220 (41%), Gaps = 14/220 (6%)

Query: 67  LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC-PSILVNRFTMDSQHL-I 124
            + A LE   IP   +   A  L+ D+ R  ++V+   +      I  +R    +    I
Sbjct: 685 KLAAALEREGIPILGTSPDAIDLAEDRERFARLVNKLNLKQPLNGIAKSRDEAAAAAARI 744

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMG 183
             P +++P        + ++  +  +   +  + + +    +L++QY+ D +E    V+ 
Sbjct: 745 GYPVLLRPSYVLGGRAMEIVDSEPQLDDYINTAVNVSGDSPVLVDQYLRDAVECDVDVVS 804

Query: 184 DASLDVTEIAVPKSDFYSYELK-YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
           D     +E+ +     +  E   +S  ++  + P  +P DI +E++R A    +A+  RG
Sbjct: 805 DG----SEVRIAGVMQHIEEAGVHSGDSACTLPPYSLPADIVEEMERQAKALAEALEVRG 860

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAG 282
           +    F       +V+ +E+N +   T     P +A   G
Sbjct: 861 LMNVQFAV--KDGEVYLIEVNPRASRT----VPFVAKAIG 894



 Score = 59.0 bits (142), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 41/278 (14%), Positives = 93/278 (33%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL++ G++V  ++ + +                     V  ++   +PD    
Sbjct: 29  SGTQAIKALKEEGYRVILVNSNPATIMTDPEMADATYIEPITPEIVAKIIDKERPDAVLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +       LE   +    +   A   + ++ R ++ +   G+    S +
Sbjct: 89  TMGGQTALNCALALFNDGTLEKYGVQMIGANADAIDKAENRQRFREAMDKIGLESARSGV 148

Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            N              P +I+P       G  +          + +    +   ++LIE+
Sbjct: 149 ANTVDEAFAVLERTGLPAIIRPSFTLGGTGGGIAYNKAEFDKIVREGLDASPTTEVLIEE 208

Query: 171 YVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEV 227
            + G  E    V+ D   + +   ++   D           +S  + PA  +    Y+ +
Sbjct: 209 SLLGWKEFEMEVVRDRKDNCIIICSIENVDPMGVHT----GDSITIAPALTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P   ++  +E+N 
Sbjct: 265 RTASIEVLREIGVETGGSNVQFAVNPADGRLIVIEMNP 302


>gi|167465045|ref|ZP_02330134.1| carbamoyl phosphate synthase large subunit [Paenibacillus larvae
           subsp. larvae BRL-230010]
          Length = 994

 Score = 67.5 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 37/228 (16%), Positives = 85/228 (37%), Gaps = 9/228 (3%)

Query: 44  LVLAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQV 99
            ++   +PD     L G  G +  V+     +LE   +    + + A   + D+   +++
Sbjct: 1   QIIRQEQPDGLLPTLGGQTGLNMAVELAKMGVLERENVRLLGTQLDAIERAEDRDLFREL 60

Query: 100 VSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
           +     PV  S +V      ++    I  P +++P       G  +   ++ +   +   
Sbjct: 61  MKELEQPVPESTIVTTVEEAVNFAGEIGYPIIVRPAYTLGGTGGGICGTEEELMEVVSSG 120

Query: 158 SSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216
             ++   Q L+E+ + G  E+   VM D   +   I V   +       ++  +      
Sbjct: 121 IRYSPIGQCLVEKSIAGMKEVEYEVMRDKHDN--CIVVCNMENLDPVGVHTGDSIVVAPS 178

Query: 217 AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +    Y+ ++  +    +A+   G     F  DP S + + +E+N 
Sbjct: 179 QTLSDREYQMLRSASLKIIRALNIEGGCNVQFALDPQSYQYYVIEVNP 226



 Score = 61.3 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/196 (12%), Positives = 70/196 (35%), Gaps = 9/196 (4%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYV 129
           L    +    + +     + ++   + ++++  +   P   V        +      P +
Sbjct: 578 LAKAGVRILGTDLKNIDRAENRKEFEALLTALDIAQPPGGTVTNVDEAVGTASQFGYPVL 637

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           ++P        + ++  D+ +   +  +   N    +LI++Y+ G E+    + D    +
Sbjct: 638 VRPSYVLGGRAMEIVYSDEELLSYMEYAVKINPEHPVLIDRYMLGKEVEVDAICDKETVL 697

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               +   +           +S  V P + +  DI +++  +     + +   G+    F
Sbjct: 698 IPGIMEHVERAGVHS----GDSIAVYPPQTLSDDIKRKIVEITTKIAKGLEIVGLVNIQF 753

Query: 249 LFDPLSRKVFWLEINV 264
           +      KV+ +E+N 
Sbjct: 754 VI--FQDKVYVIEVNP 767


>gi|115378460|ref|ZP_01465619.1| ribosomal protein [Stigmatella aurantiaca DW4/3-1]
 gi|310822271|ref|YP_003954629.1| ribosomal protein [Stigmatella aurantiaca DW4/3-1]
 gi|115364522|gb|EAU63598.1| ribosomal protein [Stigmatella aurantiaca DW4/3-1]
 gi|309395343|gb|ADO72802.1| Ribosomal protein [Stigmatella aurantiaca DW4/3-1]
          Length = 331

 Score = 67.5 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 65/308 (21%), Positives = 123/308 (39%), Gaps = 47/308 (15%)

Query: 12  REVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP------------DLAFNVLH 59
           R  S+ S +  A A    G +V  ++  R V + L   KP            DL    + 
Sbjct: 8   RSASIPSTRRLAEAGRARGHQVRVLNPSR-VEMHLDGRKPSLYYKRKTLAPGDLVIPRIA 66

Query: 60  GNFGEDG-LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
            +    G  V     +  +P  ++   A A S +KMRS Q++S+ G+ + P+ ++ R   
Sbjct: 67  LSINSYGLAVVNQFGMCGVPLMNT-AQAIAQSRNKMRSLQLLSANGIDI-PATVMAREAA 124

Query: 119 DSQHLISP----PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-- 172
           D + ++      P ++K L+G    G++V +  QS+   L       H   L+++QYV  
Sbjct: 125 DLKEMVGLVGGVPVLVKLLQGQEKHGVMVCESLQSLEAALEAVLGLGHN--LVVQQYVKS 182

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP-LDIYKEVQRLA 231
            G ++   V+G  ++                 K   L+ T +  A++  +++ +  +  A
Sbjct: 183 TGQDVRVLVVGGHAVAAVWRRP----------KVGRLSRTLIKGARLEGVELTEAWRGAA 232

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               + +G    +  D     +       E+N  P +T       M A +G    +L   
Sbjct: 233 ERTARLVGLEVAA-VD--LLDVKGHPKVFEVNSSPALTE------MEAASGM---DLATP 280

Query: 292 MVEDASCL 299
           ++E A  L
Sbjct: 281 IIERAEAL 288


>gi|332752418|gb|EGJ82808.1| acetyl-CoA carboxylase, biotin carboxylase [Shigella flexneri
           4343-70]
          Length = 449

 Score = 67.5 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 81/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         L  DK+ +   +   GVP  P    
Sbjct: 77  AIHPGYGFLSENANFAEQVERSGFIFIGPKAETIRLMGDKVSAIAAMKKAGVPCVPGSDG 136

Query: 112 -LVNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
            L +    +      I  P +IK   GG   G+ V++ D  +   +     ++ +    D
Sbjct: 137 PLSDDMDKNRAIAKRIGYPVIIKASGGGGGRGMRVVRGDAELAQSISMTRAEAKAAFSND 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+Y++    +   V+ D   +   +A           K          PA  I  +
Sbjct: 197 MVYMEKYLENPRHVEIQVLADGQGNAIYLAERDCSMQRRHQK-----VVEEAPAPGITPE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + + + +    A   IG RG    +FLF   + + +++E+N 
Sbjct: 252 LRRYIGKRCAKACVDIGYRGAGTFEFLF--ENGEFYFIEMNT 291


>gi|323497906|ref|ZP_08102915.1| carbamoyl phosphate synthase large subunit [Vibrio sinaloensis DSM
           21326]
 gi|323316951|gb|EGA69953.1| carbamoyl phosphate synthase large subunit [Vibrio sinaloensis DSM
           21326]
          Length = 1076

 Score = 67.5 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 45/278 (16%), Positives = 96/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D D              V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPDMADATYIEPIQWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV--PVCPS 110
            + G    +  +      +LE   +    +   A   + D+ R  + + S G+  P   +
Sbjct: 89  TMGGQTALNCALDLEKHGVLEEFGVEMIGATADAIDKAEDRSRFDKAMKSIGLECPRADT 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                       ++  P +I+P       G  +    +       +    +  ++LLI++
Sbjct: 149 AKSMEEAYKVLDMVGFPCIIRPSFTMGGTGGGIAYNKEEFEEICRRGLDLSPTNELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + + +   ++   D           +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKADNCIIVCSIENFDPMGIHT----GDSITVAPAQTLTDKEYQLM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P   ++  +E+N 
Sbjct: 265 RNASLAVLREIGVETGGSNVQFGINPKDGRMVIIEMNP 302



 Score = 65.1 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 33/197 (16%), Positives = 76/197 (38%), Gaps = 10/197 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH--LISPPYV 129
           LE   +P   +   A   + D+ R +  V   G+    +  V       +    I  P V
Sbjct: 653 LEAAGVPIIGTSPDAIDRAEDRERFQAAVDRLGLLQPENATVTTIDQAVEKSREIGFPLV 712

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  +Q +     ++ S ++   +L+++++ D  E+    + D    
Sbjct: 713 VRPSYVLGGRAMEIVYDEQDLRRYFNEAVSVSNESPVLLDRFLDDATEVDIDAICDGERV 772

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           V    +   +    +    S +S   LPA  +  +I  +++         +G RG+  + 
Sbjct: 773 VIGGIMEHIE----QAGVHSGDSACSLPAYTLSQEIQDKMREQVEKLAFELGVRGLMNTQ 828

Query: 248 FLFDPLSRKVFWLEINV 264
           F       +V+ +E+N 
Sbjct: 829 FAV--KDNEVYLIEVNP 843


>gi|302878822|ref|YP_003847386.1| cyanophycin synthetase [Gallionella capsiferriformans ES-2]
 gi|302581611|gb|ADL55622.1| cyanophycin synthetase [Gallionella capsiferriformans ES-2]
          Length = 856

 Score = 67.5 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 25/110 (22%), Positives = 51/110 (46%), Gaps = 3/110 (2%)

Query: 88  ALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145
           A++ DK  +K+++ + GVPV     V        +   I+ P V+KPL G    G+  + 
Sbjct: 200 AIAQDKELTKKLLEAAGVPVPQGRPVADIEDAWVAMCEIAGPVVVKPLDGNQGKGVT-VN 258

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195
                 L++  +++     ++L+E+++ G +    V+GD  +       P
Sbjct: 259 IVTREHLEIAYAAAAKISSEVLLERFIPGSDFRMLVVGDQLVAAARREPP 308


>gi|83814987|ref|YP_444613.1| acetyl-CoA carboxylase, biotin carboxylase [Salinibacter ruber DSM
           13855]
 gi|83756381|gb|ABC44494.1| acetyl-CoA carboxylase, biotin carboxylase [Salinibacter ruber DSM
           13855]
          Length = 506

 Score = 67.5 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 32/198 (16%), Positives = 76/198 (38%), Gaps = 14/198 (7%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIK 131
            + +      A     DK  ++Q++   GVP+ P     +       +    I  P +IK
Sbjct: 108 GVHFVGPPAAAIRAMGDKTAARQLMKEAGVPMAPGTTDAVASTEEGEEIAEDIGYPVLIK 167

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQLLIEQYVDG-IELTCGVMGDAS 186
              GG   G+ ++ + +     +     +++S     ++ IE+Y++    +   ++GD  
Sbjct: 168 AAAGGGGKGMRIVHEPEHFAGAMDRAQGEAASSFGDGRVFIEKYIEEPRHIEFQILGDHH 227

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRS 246
            +   +   +        K           + +  ++ +E+ + A  A ++ G R     
Sbjct: 228 GNTVHLFERECSIQRRHQK----VIEEAPSSVLTPEVRREMGKAAVAAAESCGYRNAGTV 283

Query: 247 DFLFDPLSRKVFWLEINV 264
           +FL D      +++E+N 
Sbjct: 284 EFLVDA-DLNYYFMEMNT 300


>gi|78188917|ref|YP_379255.1| D-alanine-D-alanine ligase and related ATP-grasp enzyme-like
           [Chlorobium chlorochromatii CaD3]
 gi|78171116|gb|ABB28212.1| D-alanine-D-alanine ligase and related ATP-grasp enzymes-like
           protein [Chlorobium chlorochromatii CaD3]
          Length = 573

 Score = 67.5 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/152 (19%), Positives = 58/152 (38%), Gaps = 15/152 (9%)

Query: 54  AFNVLHG------NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV 107
               ++G       +GE   +      +E      G +A  LS DK  +K V +S GVP 
Sbjct: 164 VLPFINGTKFWQYGWGEKSRI-----FMESRSNTDGSIAHTLSNDKPITKAVFNSLGVPT 218

Query: 108 CPSILVNRFT--MDSQHLISPPYVIKPLKGGSSLGII-VIKKDQSIPLDLLQSSSWNHGD 164
              +++        +   I  P V+KP   G   G+I  I+    +      +  +   D
Sbjct: 219 PKDVVIKSSNELETAIAAIGYPCVLKPTNTGGGKGVIANIRNFTQLLNAFTYARQF-TKD 277

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPK 196
            +++E+++ G +    V+    +   +    K
Sbjct: 278 AIMVERFICGDDYRLMVIDGKFVAAIKREPAK 309


>gi|21241037|ref|NP_640619.1| biotin carboxylase [Xanthomonas axonopodis pv. citri str. 306]
 gi|21106329|gb|AAM35155.1| biotin carboxylase [Xanthomonas axonopodis pv. citri str. 306]
          Length = 675

 Score = 67.5 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 74/221 (33%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H  +G   E+           I +      A     DK  +K ++   GVP+ P    
Sbjct: 90  AIHPGYGFLSENAAFAEACAHAGIVFIGPPAAAIRAMGDKSAAKALMQRAGVPLTPGYHG 149

Query: 113 ---VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
                 F       I  P +IK   GG   G+  +    +    L     ++ S      
Sbjct: 150 DEQAPAFLRAQADAIGYPVLIKASAGGGGKGMRRVDASAAFDDALASCQREAQSAFGNAH 209

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           +L+E+YV     +   V GD   +V  +           ++          PA  +    
Sbjct: 210 VLVEKYVQRPRHIEIQVFGDTHGEVVYL-----FERDCSVQRRHQKVLEEAPAPGMSEAR 264

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              + R A  A QA+G  G    +F+  P     +++E+N 
Sbjct: 265 RAAMGRAAVDAAQAVGYVGAGTVEFIAGP-DGDFYFMEMNT 304


>gi|88855675|ref|ZP_01130338.1| biotin carboxylase [marine actinobacterium PHSC20C1]
 gi|88814999|gb|EAR24858.1| biotin carboxylase [marine actinobacterium PHSC20C1]
          Length = 584

 Score = 67.5 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 76/221 (34%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+      +    I +      A     DK+ ++ +    G P+ P    
Sbjct: 79  AIHPGYGFLAENAEFARAVIDAGIIWIGPSPDAIEKLGDKVSARHIAEKVGAPLAPGTLN 138

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL----DLLQSSSWNHGDQ 165
            +      +D   L   P  IK   GG   G+ V +  + IP        ++ +     +
Sbjct: 139 PVTGAAEVLDFVDLHGLPVAIKAAFGGGGRGLKVARTREEIPELFDSATREAVAAFGRGE 198

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
             +E+Y+D    +    + DA  +V  I+          L+          PA  +  + 
Sbjct: 199 CFVEKYLDQPRHVETQCLADAHGNVVVIST-----RDCSLQRRHQKLVEEAPAPFLSDEQ 253

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +   +    + +G  G    +FL       + +LE+N 
Sbjct: 254 NRALYESSKAILREVGYLGAGTCEFLV-AKDGTISFLEVNT 293


>gi|238782963|ref|ZP_04626991.1| Biotin carboxylase [Yersinia bercovieri ATCC 43970]
 gi|238716166|gb|EEQ08150.1| Biotin carboxylase [Yersinia bercovieri ATCC 43970]
          Length = 449

 Score = 67.5 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 39/222 (17%), Positives = 80/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         L  DK+ +   +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAEQVERSGFIFIGPRAETIRLMGDKVSAISAMKKAGVPCVPGSDG 136

Query: 112 LVNRFT---MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
            +   T         I  P +IK   GG   G+ V++ D+ +   +     ++ +  + D
Sbjct: 137 PLTDDTTKNKAFAKRIGYPVIIKASGGGGGRGMRVVRHDKDLEQSINMTRAEAKAAFNND 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+Y++    +   ++ D       +A           K          PA  I  +
Sbjct: 197 MVYMEKYLENPRHIEIQILADGQGSAIYLAERDCSMQRRHQK-----VVEEAPAPGITGE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + + +      A   IG RG    +FL+   + + +++E+N 
Sbjct: 252 MRRYIGERCAKACVEIGYRGAGTFEFLY--ENGEFYFIEMNT 291


>gi|331016637|gb|EGH96693.1| carbamoyl phosphate synthase large subunit [Pseudomonas syringae
           pv. lachrymans str. M302278PT]
          Length = 1073

 Score = 67.5 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 29/196 (14%), Positives = 75/196 (38%), Gaps = 8/196 (4%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYV 129
           LE   +P   +   A   + D+ R +Q+V    +   P+  V        +   I  P V
Sbjct: 653 LEAAGVPIIGTSPDAIDRAEDRERFQQMVERLNLRQPPNATVRSEDEAIRAAAKIGYPLV 712

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLD 188
           ++P        + ++ ++  +   L ++   ++   +L++ +++  IE+    + D +  
Sbjct: 713 VRPSYVLGGRAMEIVYQEDELKRYLREAVQVSNDSPVLLDHFLNCAIEMDVDAVCDGTDV 772

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           V    +   +       +S  ++  + P  +P  I  E++         +G  G+   + 
Sbjct: 773 VIGAIMQHIEQAGV---HSGDSACSLPPYSLPAHIQDEMREQVKKMALELGVVGL--MNV 827

Query: 249 LFDPLSRKVFWLEINV 264
                   ++ +E+N 
Sbjct: 828 QLALQGEDIYVIEVNP 843



 Score = 63.6 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 44/278 (15%), Positives = 96/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +              D         ++V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPAMADATYIEPIKWQTVAKIIEKERPDALLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +    + +LE   +    +       + D+ R  + + S G+    S +
Sbjct: 89  TMGGQTALNCALDLEREGVLEKFGVEMIGANADTIDKAEDRSRFDKAMKSIGLACPRSGI 148

Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     S     +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHSMEEASAVLEKLGFPCIIRPSFTMGGTGGGIAYNREEFEEICARGLDLSPTKELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D   + +   ++   D           +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKKDNCIIVCSIENFDPMGVHT----GDSITVAPAQTLTDKEYQIL 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F   P + ++  +E+N 
Sbjct: 265 RNASLAVLREIGVETGGSNVQFGICPDTGRMVVIEMNP 302


>gi|330987044|gb|EGH85147.1| carbamoyl phosphate synthase large subunit [Pseudomonas syringae
           pv. lachrymans str. M301315]
          Length = 1073

 Score = 67.5 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 29/196 (14%), Positives = 75/196 (38%), Gaps = 8/196 (4%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYV 129
           LE   +P   +   A   + D+ R +Q+V    +   P+  V        +   I  P V
Sbjct: 653 LEAAGVPIIGTSPDAIDRAEDRERFQQMVERLNLRQPPNATVRSEDEAIRAAAKIGYPLV 712

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLD 188
           ++P        + ++ ++  +   L ++   ++   +L++ +++  IE+    + D +  
Sbjct: 713 VRPSYVLGGRAMEIVYQEDELKRYLREAVQVSNDSPVLLDHFLNCAIEMDVDAVCDGTDV 772

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           V    +   +       +S  ++  + P  +P  I  E++         +G  G+   + 
Sbjct: 773 VIGAIMQHIEQAGV---HSGDSACSLPPYSLPAHIQDEMREQVKKMALELGVVGL--MNV 827

Query: 249 LFDPLSRKVFWLEINV 264
                   ++ +E+N 
Sbjct: 828 QLALQGEDIYVIEVNP 843



 Score = 63.2 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 96/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +              D         ++V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPAMADATYIEPIKWQTVAKIIEKERPDALLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +    + +LE   +    +       + D+ R  + + S G+    S +
Sbjct: 89  TMGGQTALNCALDLEREGVLEKFGVEMIGANADTIDKAEDRSRFDKAMKSIGLACPRSGI 148

Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     +     +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHSMEEANAVLEKLGFPCIIRPSFTMGGTGGGIAYNREEFEEICARGLDLSPTKELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D   + +   ++   D           +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKKDNCIIVCSIENFDPMGVHT----GDSITVAPAQTLTDKEYQIL 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F   P + ++  +E+N 
Sbjct: 265 RNASLAVLREIGVETGGSNVQFGICPDTGRMVVIEMNP 302


>gi|325262943|ref|ZP_08129679.1| carbamoyl-phosphate synthase, large subunit [Clostridium sp. D5]
 gi|324032037|gb|EGB93316.1| carbamoyl-phosphate synthase, large subunit [Clostridium sp. D5]
          Length = 1067

 Score = 67.5 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 31/225 (13%), Positives = 79/225 (35%), Gaps = 12/225 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTMDSQHLISPPYV 129
           L  + +P   +       + D+    +++  C +P      +       +  + +  P +
Sbjct: 647 LMKMGVPILGTSAENVDKAEDRELFDEILEECQIPRPTGGTVFTAEEAKEVANRLGYPVL 706

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           ++P       G+ +   D  I   +   +       +L+++Y+ G E+    + D     
Sbjct: 707 VRPSYVLGGQGMQIAINDHDIDEFIGIINRIAQDHPILVDKYLQGKEIEVDAVCDGE--- 763

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
            +I +P    +       S +S  V PA+ +      ++        +++   G+    F
Sbjct: 764 -DILIPGIMEHIERAGIHSGDSISVYPAQSLSEAAKDKIAEYTRRLAKSLQVIGLINIQF 822

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +       V+ +E+N +   T     P ++   G     L   ++
Sbjct: 823 IV-CGDEDVYVIEVNPRSSRT----VPYISKVTGIPIVPLATKVI 862



 Score = 55.5 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 43/286 (15%), Positives = 103/286 (36%), Gaps = 33/286 (11%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQID-------VDRSVG--------------LV 45
           G ++E + +   G     +L++ G +V  ++        D+ +                +
Sbjct: 21  GQAAEFDYA---GTQACRSLKEEGIEVVLLNSNPATIMTDKDIADKVYIEPLTVEVVEQL 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   +PD     L G  G +  ++      L+  ++    +       + D++  K  + 
Sbjct: 78  IRKEQPDSVLPTLGGQAGLNLAMELEEAGFLKNNDVRLIGTTSETIRKAEDRLEFKATME 137

Query: 102 SCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G PV  S++V      +   + I  P V++P       G  + +  + +   L     
Sbjct: 138 KIGEPVAASLVVENVADGLAFANEIGYPVVLRPAYTLGGSGGGIAQNSEQLVEILENGLR 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   Q+L+E+ + G  E+   VM D++ +   I V   +       ++  +        
Sbjct: 198 LSRVGQVLVERCIAGWKEIEYEVMRDSNGN--CITVCNMENIDPVGVHTGDSIVVAPSQT 255

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +    Y+ ++  A      +   G     +  +P+S +   +E+N 
Sbjct: 256 LGDKEYQMLRTSALNIISELNITGGCNVQYALNPVSFEYCVIEVNP 301


>gi|320322539|gb|EFW78632.1| carbamoyl phosphate synthase large subunit [Pseudomonas syringae
           pv. glycinea str. B076]
          Length = 1073

 Score = 67.5 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 29/196 (14%), Positives = 75/196 (38%), Gaps = 8/196 (4%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYV 129
           LE   +P   +   A   + D+ R +Q+V    +   P+  V        +   I  P V
Sbjct: 653 LEAAGVPIIGTSPDAIDRAEDRERFQQMVERLNLRQPPNATVRSEDEAIRAAAKIGYPLV 712

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLD 188
           ++P        + ++ ++  +   L ++   ++   +L++ +++  IE+    + D +  
Sbjct: 713 VRPSYVLGGRAMEIVYQEDELKRYLREAVQVSNDSPVLLDHFLNCAIEMDVDAVCDGTDV 772

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           V    +   +       +S  ++  + P  +P  I  E++         +G  G+   + 
Sbjct: 773 VIGAIMQHIEQAGV---HSGDSACSLPPYSLPAHIQDEMREQVKKMALELGVVGL--MNV 827

Query: 249 LFDPLSRKVFWLEINV 264
                   ++ +E+N 
Sbjct: 828 QLALQGEDIYVIEVNP 843



 Score = 62.4 bits (151), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 96/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +              D         ++V  ++   +PD    
Sbjct: 29  SGAQACRALREEGYRVILVNSNPATIMTDPAMADATYIEPIKWQTVAKIIEKERPDALLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +    + +LE   +    +       + D+ R  + + S G+    S +
Sbjct: 89  TMGGQTALNCALDLEREGVLEKFGVEMIGANADTIDKAEDRSRFDKAMKSIGLACPRSGI 148

Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     +     +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHSMEEANAVLEKLGFPCIIRPSFTMGGTGGGIAYNREEFEEICARGLDLSPTKELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D   + +   ++   D           +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKKDNCIIVCSIENFDPMGVHT----GDSITVAPAQTLTDKEYQIL 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F   P + ++  +E+N 
Sbjct: 265 RNASLAVLREIGVETGGSNVQFGICPDTGRMVVIEMNP 302


>gi|295107772|emb|CBL21725.1| acetyl-CoA carboxylase, biotin carboxylase [Ruminococcus obeum
           A2-162]
          Length = 447

 Score = 67.5 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 73/221 (33%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  FG   E+     + E   I +        A   +K  +K  +++ GVP+ P    
Sbjct: 77  AIHPGFGFLSENSRFAELCEQCNITFIGPPANVIASLGNKQAAKNTMANAGVPIIPGGKN 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS-----SSWNHGD 164
            I            I  P +IK   GG   G+ V             +      ++    
Sbjct: 137 PIYTVEEGQKEAETIGYPVIIKAALGGGGKGMRVADTPADFEESFRTAQKETQMAFG-DS 195

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            + +E +V     +   +M D   +V  +            K    +   V    I  ++
Sbjct: 196 TMYVEHFVRHPRHIEFQIMADKFGNVIHLGERDCSIQRNHQKMIEESPCEV----ITEEL 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +   A  A +A G       +FL D    + +++E+N 
Sbjct: 252 RERMGGAAVKAAKAAGYENAGTIEFLLDK-DGRFYFMEMNT 291


>gi|295690202|ref|YP_003593895.1| carbamoyl-phosphate synthase subunit L [Caulobacter segnis ATCC
           21756]
 gi|295432105|gb|ADG11277.1| Carbamoyl-phosphate synthase L chain ATP-binding protein
           [Caulobacter segnis ATCC 21756]
          Length = 664

 Score = 67.5 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 69/220 (31%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  FG   E+           I +      A +   DK+ SK+     GV   P    
Sbjct: 77  AVHPGFGFLSENAGFAQRCADEGIVFIGPNPGAISAMGDKIESKKFAQKAGVSCVPGHIG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS----IPLDLLQSSSWNHGDQ 165
            I      +     I  P +IK   GG   GI V    Q      P    ++ +    D+
Sbjct: 137 EIADTAEAVKISEEIGYPVMIKASAGGGGKGIRVAWTRQDVEEGFPAVRAEAKASFGDDR 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE++++    +   V+GD    V  +   +        K             +     
Sbjct: 197 IFIEKFIESPRHIEIQVLGDKHGAVVHLFERECSIQRRNQK----VIEEAPSPLLDEATR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +   A    +A+        +F      +  ++LE+N 
Sbjct: 253 AAMGAQAVALAKAVNYDSAGTVEF-VAGQDKSFYFLEMNT 291


>gi|172041259|ref|YP_001800973.1| acyl-CoA carboxylase, alpha subunit [Corynebacterium urealyticum
           DSM 7109]
 gi|171852563|emb|CAQ05539.1| acyl-CoA carboxylase, alpha subunit [Corynebacterium urealyticum
           DSM 7109]
          Length = 601

 Score = 67.5 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 35/234 (14%), Positives = 76/234 (32%), Gaps = 17/234 (7%)

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           ++  + A    D      +G   E+      ++   + +      A     DK+ ++Q+ 
Sbjct: 78  ALLDIAARSGADCVHPG-YGFLAENADFARAVQDAGLVWVGPSPEAIETLGDKVAARQLA 136

Query: 101 SSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL- 155
           +  G P+ P     I       D       P  IK   GG   G+ V+ ++  I      
Sbjct: 137 TKVGAPLAPGTDQPIESWEEARDFAAEHGMPIAIKAAFGGGGRGLKVVHEEADIEEGFAS 196

Query: 156 ---QSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
              ++ +     +  +E+++     +   V+ D   +V  +           ++      
Sbjct: 197 AGREAKAAFGRGECYVEKFLTKPRHVEAQVLADTHGNVRIVGT-----RDCSVQRRFQKL 251

Query: 212 THVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
               PA  +  +    +   A    +  G  G    +F+       V +LE+N 
Sbjct: 252 VEEAPAPFLTDEQNTSIYEGAREICREAGYTGAGTVEFIV-AEDGTVSFLEVNT 304


>gi|71733927|ref|YP_276322.1| carbamoyl phosphate synthase large subunit [Pseudomonas syringae
           pv. phaseolicola 1448A]
 gi|71554480|gb|AAZ33691.1| carbamoyl-phosphate synthase, large subunit [Pseudomonas syringae
           pv. phaseolicola 1448A]
          Length = 1073

 Score = 67.5 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 29/196 (14%), Positives = 75/196 (38%), Gaps = 8/196 (4%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYV 129
           LE   +P   +   A   + D+ R +Q+V    +   P+  V        +   I  P V
Sbjct: 653 LEAAGVPIIGTSPDAIDRAEDRERFQQMVERLNLRQPPNATVRSEDEAIRAAAKIGYPLV 712

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLD 188
           ++P        + ++ ++  +   L ++   ++   +L++ +++  IE+    + D +  
Sbjct: 713 VRPSYVLGGRAMEIVYQEDELKRYLREAVQVSNDSPVLLDHFLNCAIEMDVDAVCDGTDV 772

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           V    +   +       +S  ++  + P  +P  I  E++         +G  G+   + 
Sbjct: 773 VIGAIMQHIEQAGV---HSGDSACSLPPYSLPAHIQDEMREQVKKMALELGVVGL--MNV 827

Query: 249 LFDPLSRKVFWLEINV 264
                   ++ +E+N 
Sbjct: 828 QLALQGEDIYVIEVNP 843



 Score = 63.2 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 96/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +              D         ++V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPAMADATYIEPIKWQTVAKIIEKERPDALLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +    + +LE   +    +       + D+ R  + + S G+    S +
Sbjct: 89  TMGGQTALNCALDLEREGVLEKFGVEMIGANADTIDKAEDRSRFDKAMKSIGLACPRSGI 148

Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     +     +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHSMEEANAVLEKLGFPCIIRPSFTMGGTGGGIAYNREEFEEICARGLDLSPTKELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D   + +   ++   D           +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKKDNCIIVCSIENFDPMGVHT----GDSITVAPAQTLTDKEYQIL 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F   P + ++  +E+N 
Sbjct: 265 RNASLAVLREIGVETGGSNVQFGICPDTGRMVVIEMNP 302


>gi|320329992|gb|EFW85979.1| carbamoyl phosphate synthase large subunit [Pseudomonas syringae
           pv. glycinea str. race 4]
          Length = 1073

 Score = 67.5 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 29/196 (14%), Positives = 75/196 (38%), Gaps = 8/196 (4%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYV 129
           LE   +P   +   A   + D+ R +Q+V    +   P+  V        +   I  P V
Sbjct: 653 LEAAGVPIIGTSPDAIDRAEDRERFQQMVERLNLRQPPNATVRSEDEAIRAAAKIGYPLV 712

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLD 188
           ++P        + ++ ++  +   L ++   ++   +L++ +++  IE+    + D +  
Sbjct: 713 VRPSYVLGGRAMEIVYQEDELKRYLREAVQVSNDSPVLLDHFLNCAIEMDVDAVCDGTDV 772

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           V    +   +       +S  ++  + P  +P  I  E++         +G  G+   + 
Sbjct: 773 VIGAIMQHIEQAGV---HSGDSACSLPPYSLPAHIQDEMREQVKKMALELGVVGL--MNV 827

Query: 249 LFDPLSRKVFWLEINV 264
                   ++ +E+N 
Sbjct: 828 QLALQGEDIYVIEVNP 843



 Score = 62.4 bits (151), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 96/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +              D         ++V  ++   +PD    
Sbjct: 29  SGAQACRALREEGYRVILVNSNPATIMTDPAMADATYIEPIKWQTVAKIIEKERPDALLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +    + +LE   +    +       + D+ R  + + S G+    S +
Sbjct: 89  TMGGQTALNCALDLEREGVLEKFGVEMIGANADTIDKAEDRSRFDKAMKSIGLACPRSGI 148

Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     +     +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHSMEEANAVLEKLGFPCIIRPSFTMGGTGGGIAYNREEFEEICARGLDLSPTKELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D   + +   ++   D           +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKKDNCIIVCSIENFDPMGVHT----GDSITVAPAQTLTDKEYQIL 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F   P + ++  +E+N 
Sbjct: 265 RNASLAVLREIGVETGGSNVQFGICPDTGRMVVIEMNP 302


>gi|297180937|gb|ADI17140.1| carbamoylphosphate synthase large subunit (split gene in mj)
           [uncultured gamma proteobacterium HF0070_08D07]
          Length = 1073

 Score = 67.5 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 29/203 (14%), Positives = 80/203 (39%), Gaps = 13/203 (6%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYV 129
           LE   +P   +   A   + D+ R +++V   G+    + L         +   I  P V
Sbjct: 653 LESFGVPIIGTSPDAIDRAEDRERFQKLVDGLGLRQPANRLAREIDEAVANADKIGYPIV 712

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLD 188
           ++P        + ++  +Q +   +  +   ++   +L+++++D  +E+   ++ D    
Sbjct: 713 VRPSYVLGGRAMEIVYGEQELRQYMRSAVEVSNESPVLLDRFLDHALEVDVDLVSDGEKA 772

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           V    +   +       +S  ++  + P ++  DI  ++++      + +G  G+   + 
Sbjct: 773 VVGAIMQHIEQAGV---HSGDSACSLPPYRLSTDIQNKIRQQTIKISKELGVVGL--MNV 827

Query: 249 LFDPLSRKVFWLEIN-----VQP 266
                  ++F +E+N       P
Sbjct: 828 QLAVQDGEIFLIEVNPRASRTIP 850



 Score = 59.4 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 96/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G +V  +              D         ++V  ++A  +PD    
Sbjct: 29  SGAQACKALKEEGLRVVLVNSNPATIMTDPAMADATYIEPVNWKTVREIIAKERPDAILP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +    + +LE        +   A   + D+    + +   G+    S++
Sbjct: 89  TMGGQTALNCALDLVREGVLEEFSCRMIGASKEAIDKAEDRELFDKAMKKIGLGTPRSVI 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     +  Q  +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 CHSLEEAIQVQKQVGFPCIIRPSFTLGGSGGGIAYNKEEFEEICGRGLDLSPTSELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D   + +   ++   D           +S  V P++ +    Y+ +
Sbjct: 209 SLLGWKEFEMEVVRDKKDNCIIVCSIENFDPMGVHT----GDSITVAPSQTLTDKEYQLL 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F   P   ++  +E+N 
Sbjct: 265 RDASIAVLREIGVETGGSNVQFAISPDDGRIVVIEMNP 302


>gi|260775305|ref|ZP_05884202.1| ribosomal protein S6 glutaminyl transferase [Vibrio coralliilyticus
           ATCC BAA-450]
 gi|260608486|gb|EEX34651.1| ribosomal protein S6 glutaminyl transferase [Vibrio coralliilyticus
           ATCC BAA-450]
          Length = 301

 Score = 67.5 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 62/306 (20%), Positives = 119/306 (38%), Gaps = 44/306 (14%)

Query: 16  LSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAI---- 71
           L S K    A +  G  V  ID  R   + +   KP++ F       G D ++  I    
Sbjct: 12  LYSTKRLIEACQKRGHDVKVIDALR-CYMNINSDKPEIHFKG-EELSGFDAIIPRIGASV 69

Query: 72  ----------LELLEIPYTHSGILASALSMDKMRSKQVVSSCGV--PVCPSILVNRFTMD 119
                      E++ + Y  +  +A   S DK+RS Q++S  G+  PV           D
Sbjct: 70  TFYGTAVLRQFEMMGV-YPVNESVAITRSRDKLRSMQLLSRKGIGMPVTGFASKPDDVKD 128

Query: 120 SQHLISP-PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD---GI 175
              ++   P VIK L+G   +G+++ +  ++     +  +       +++++Y+    G 
Sbjct: 129 LLDMVGGAPVVIKLLEGTQGIGVVLAETRKAAES--VVEAFMGLKANIMVQEYIKEAGGA 186

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
           ++ C V+GD  +   +    + +F S   +  S +   + P +         +R A  A 
Sbjct: 187 DIRCFVIGDKVIAAMKRQGAEGEFRSNLHRGGSASLIKITPEE---------RRTAIAAA 237

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE- 294
           + +G       D       R    +E+N  PG+  +       A  G     +++  +E 
Sbjct: 238 KVMGLNVAG-VD--LLRSERGPLVMEVNSSPGLEGI------EAATGKDIAGMIVEFIEK 288

Query: 295 DASCLR 300
           +AS  R
Sbjct: 289 NASTKR 294


>gi|217964838|ref|YP_002350516.1| pyruvate carboxylase [Listeria monocytogenes HCC23]
 gi|217334108|gb|ACK39902.1| pyruvate carboxylase [Listeria monocytogenes HCC23]
 gi|307570602|emb|CAR83781.1| pyruvate carboxylase [Listeria monocytogenes L99]
          Length = 1146

 Score = 67.5 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 36/243 (14%), Positives = 82/243 (33%), Gaps = 25/243 (10%)

Query: 35  QIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSM 91
            +D+  ++  +      D     +H  +G   E+       E   I +         +  
Sbjct: 63  YLDI-ENIIEIAKESGAD----AIHPGYGFLSENIEFARRCEQEGIIFVGPKSKHLDMFG 117

Query: 92  DKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK- 146
           DK+++K+      +PV P     +   +   +       P +IK   GG   G+ V++  
Sbjct: 118 DKIKAKEQALLADIPVIPGSNGPVAGIKEVEEFGEKNGYPLMIKASLGGGGRGMRVVESK 177

Query: 147 ---DQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSY 202
               +S      ++ +    D++ +E+ V +   +   ++GD   ++  +          
Sbjct: 178 EHVKESFERASSEAKAAFGNDEVYVEKCVMNPKHIEVQILGDTHGNIVHLFERDCSIQRR 237

Query: 203 ELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
             K        V P   I  D+   +   A    + +        +FL        +++E
Sbjct: 238 HQK-----VVEVAPCNAITSDLRNRICDAAVKLMKNVDYINAGTVEFLV--EGDDFYFIE 290

Query: 262 INV 264
           +N 
Sbjct: 291 VNP 293


>gi|83649323|ref|YP_437758.1| pyruvate carboxylase subunit A [Hahella chejuensis KCTC 2396]
 gi|83637366|gb|ABC33333.1| acetyl-CoA carboxylase, biotin carboxylase [Hahella chejuensis KCTC
           2396]
          Length = 490

 Score = 67.5 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 69/220 (31%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            LH  +G   E+  +  I     + +            DK  ++       VPV P    
Sbjct: 94  ALHPGYGFLSENAELAEICAQRGVKFIGPSADVIRQMGDKTEARNSAKRASVPVTPGSEG 153

Query: 114 N----RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGD 164
           N       ++    I  P ++K   GG   GI     ++ +  +        + ++   +
Sbjct: 154 NLRDLEHAVEVAAGIGYPVMLKATSGGGGRGIRRCNDEKDLRSNYQRVISEATKAFGRAE 213

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             L +  VD   +   V+ DA   V  +            K            ++  +  
Sbjct: 214 VFLEKCIVDPRHIEVQVLADAHGGVVHLYERDCSIQRRNQK----LIELAPSPQLTNEQR 269

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             V  LA    + +G       +FL D      +++E+N 
Sbjct: 270 HYVGELAVKVAREVGYENAGTVEFLLD-HDGSFYFMEMNT 308


>gi|54293373|ref|YP_125788.1| hypothetical protein lpl0422 [Legionella pneumophila str. Lens]
 gi|53753205|emb|CAH14652.1| hypothetical protein lpl0422 [Legionella pneumophila str. Lens]
          Length = 484

 Score = 67.5 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 31/189 (16%), Positives = 79/189 (41%), Gaps = 15/189 (7%)

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGII 142
              +     +K+   +++SS  +    ++ ++++  +    I  P V+K      S G++
Sbjct: 272 DPQSIIKCSNKVYLAELLSSHQIMTPDTLFISKYDKELPK-IEFPCVLKKPDSAFSHGVV 330

Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYS 201
            I  ++S+   L Q   + + D ++++ ++    +   G++ + +L      + K  +  
Sbjct: 331 KIDDEKSLQKSLNQF--FKNSDLVVVQPFIPTEFDWRIGILDNKALFACRYFMAKGHWQI 388

Query: 202 YE----LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
           Y+     +    +S  +   ++P  I K    +A  + + IG  G+   D        K 
Sbjct: 389 YDWHCQEENKEGDSETLPLHEVPEQIIK----IALKSTRLIG-DGLYGVD--IKSHGNKY 441

Query: 258 FWLEINVQP 266
           + +E+N  P
Sbjct: 442 YVIEVNDNP 450


>gi|52840624|ref|YP_094423.1| ribosomal protein S6 modification protein [Legionella pneumophila
           subsp. pneumophila str. Philadelphia 1]
 gi|54296416|ref|YP_122785.1| hypothetical protein lpp0446 [Legionella pneumophila str. Paris]
 gi|148361004|ref|YP_001252211.1| ribosomal protein S6 modification protein [Legionella pneumophila
           str. Corby]
 gi|296105929|ref|YP_003617629.1| Glutathione synthase/Ribosomal protein S6 modification enzyme
           (glutaminyl transferase) [Legionella pneumophila 2300/99
           Alcoy]
 gi|52627735|gb|AAU26476.1| ribosomal protein S6 modification protein [Legionella pneumophila
           subsp. pneumophila str. Philadelphia 1]
 gi|53750201|emb|CAH11594.1| hypothetical protein lpp0446 [Legionella pneumophila str. Paris]
 gi|148282777|gb|ABQ56865.1| ribosomal protein S6 modification protein [Legionella pneumophila
           str. Corby]
 gi|295647830|gb|ADG23677.1| Glutathione synthase/Ribosomal protein S6 modification enzyme
           (glutaminyl transferase) [Legionella pneumophila 2300/99
           Alcoy]
 gi|307609190|emb|CBW98651.1| hypothetical protein LPW_04621 [Legionella pneumophila 130b]
          Length = 484

 Score = 67.5 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 31/189 (16%), Positives = 79/189 (41%), Gaps = 15/189 (7%)

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGII 142
              +     +K+   +++SS  +    ++ ++++  +    I  P V+K      S G++
Sbjct: 272 DPQSIIKCSNKVYLAELLSSHQIMTPDTLFISKYDKELPK-IEFPCVLKKPDSAFSHGVV 330

Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYS 201
            I  ++S+   L Q   + + D ++++ ++    +   G++ + +L      + K  +  
Sbjct: 331 KIDDEKSLQKSLNQF--FKNSDLVVVQPFIPTEFDWRIGILDNKALFACRYFMAKGHWQI 388

Query: 202 YE----LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
           Y+     +    +S  +   ++P  I K    +A  + + IG  G+   D        K 
Sbjct: 389 YDWHCQEENKEGDSETLPLHEVPEQIIK----IALKSTRLIG-DGLYGVD--IKSHGNKY 441

Query: 258 FWLEINVQP 266
           + +E+N  P
Sbjct: 442 YVIEVNDNP 450


>gi|21226140|ref|NP_632062.1| carbamoyl phosphate synthase large subunit [Methanosarcina mazei
           Go1]
 gi|22095493|sp|P58944|CARB_METMA RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|20904365|gb|AAM29734.1| Carbamoyl-phosphate synthase large chain [Methanosarcina mazei Go1]
          Length = 1073

 Score = 67.5 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 47/299 (15%), Positives = 103/299 (34%), Gaps = 40/299 (13%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLV-----QA 70
           AL + G +   I         D D S  L    L  +   NV+      DG++     Q 
Sbjct: 574 ALREEGIETHIINNNPETVSTDFDTSDKLFFEPLTMEYVMNVIE-RERPDGVLVQFGGQT 632

Query: 71  ILEL-------------LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--SILVNR 115
            + L             L      +      L+ D+ +   ++   G+P          +
Sbjct: 633 SVNLALPLKKELKRRTDLNTVILGTDPEDMDLAEDREKFYLLMQELGIPQPEGGYATSQQ 692

Query: 116 FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175
             ++    I  P +++P        + ++  +  +   + ++   +    +LI+ +++  
Sbjct: 693 EAIEVAKRIGFPVLVRPSYVLGGRAMEIVYDEIDLERYMKEAVRVSPEHPILIDDFLE-- 750

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLA 234
              C +  DA  D  ++ +     +  E    S +S  V+P + +  ++  +V+      
Sbjct: 751 -AACEIDVDAVCDQIDVLIGAIMEHIEEAGVHSGDSACVIPPQSLSKEVLDQVRDYTRKI 809

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
             A+G R     +        KVF LE N +   T     P ++   G    ++   ++
Sbjct: 810 --ALGLRVKGLINIQMAEKGGKVFVLEANPRSSRT----IPFVSKAVGIPLAKIAAKVI 862



 Score = 55.5 bits (133), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 41/275 (14%), Positives = 98/275 (35%), Gaps = 32/275 (11%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     +L++ G +V  +         D +            R +  ++   +PD    
Sbjct: 29  SGSQACRSLKEEGVQVVLVNSNPATIMTDPEMADSVYIEPLDARIIEKIIEKERPDGIIA 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G  G +   +     + E   +    + + A   + D+   K+ + S G  V  S  
Sbjct: 89  GIGGQTGLNITSELAEMGVFEKYGVQILGTPVEAIKNTEDRELFKETMLSIGEKVPLSRA 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           V+  +   +    +  P +I+P       G  + +  + +     +    +  +Q+LIE+
Sbjct: 149 VHSLKEAEEVVEELGLPLIIRPAYTLGGAGGGIARTKEELLEITERGLRRSRINQVLIEE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
            V G  E+   VM DA+   T I +   +       ++  ++       +  + ++ ++ 
Sbjct: 209 SVLGWAEVEYEVMRDAND--TCIVICNMENIDPMGVHTGESAVVAPSQTLSDEEHQMLRS 266

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +    +A+   G     +       ++   E+N 
Sbjct: 267 ASIKIIRALKIEGGCNIQYALKEGDYRIV--EVNP 299


>gi|313201619|ref|YP_004040277.1| carbamoyl-phosphate synthase large subunit [Methylovorus sp. MP688]
 gi|312440935|gb|ADQ85041.1| carbamoyl-phosphate synthase, large subunit [Methylovorus sp.
           MP688]
          Length = 1069

 Score = 67.5 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 28/196 (14%), Positives = 75/196 (38%), Gaps = 8/196 (4%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           LE   +P   +   A   + D+ R +Q++   G+   P+         +     I  P V
Sbjct: 648 LEKAGVPIIGTSPDAIDRAEDRERFQQMLQELGLKQPPNRTARTPEEAIRLAQEIGYPLV 707

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++ +   +   + ++   ++   +L+++++ D +E+    + D    
Sbjct: 708 VRPSYVLGGRAMEIVHEQAQLERYMREAVKVSNESPVLLDRFLNDALEVDVDALSDGEDV 767

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           +    +   +       +S  ++  + P  +   +  E++       +A+G  G+    F
Sbjct: 768 IIGGIMEHIEQAGV---HSGDSACSLPPYSLTQAMQDELRVQTVQMAKALGVVGLMNVQF 824

Query: 249 LFDPLSRKVFWLEINV 264
                   V+ LE+N 
Sbjct: 825 AI--QGDVVYVLEVNP 838



 Score = 63.2 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 47/278 (16%), Positives = 97/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D +            + V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPVTWKMVEKIIAIERPDALLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      +LE   +    +   A   + D+ + K  ++  G+    S +
Sbjct: 89  TMGGQTALNCALDLAKHGVLEKYNVELIGASKEAIDKAEDREKFKTAMTKIGLGSARSSV 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     +  Q  I  P +I+P       G  +    +       +    +   +LLIE+
Sbjct: 149 AHSLEEALQVQASIGYPAIIRPSFTMGGSGGGIAYNKEEFLAICERGLEASPTSELLIEE 208

Query: 171 YVDG-IELTCGVMGD-ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D     +   ++   D           +S  V PA+ +    Y+ +
Sbjct: 209 SLLGWKEYEMEVVRDSKDNCIIICSIENLDPMGVHT----GDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P   ++  +E+N 
Sbjct: 265 RNASLAVLREIGVDTGGSNVQFAINPDDGRMIVIEMNP 302


>gi|296283722|ref|ZP_06861720.1| hypothetical protein CbatJ_08874 [Citromicrobium bathyomarinum
           JL354]
          Length = 678

 Score = 67.5 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 37/223 (16%), Positives = 74/223 (33%), Gaps = 19/223 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E       L+   I +      A A   DK+ SK++    GV   P    
Sbjct: 77  AVHPGYGFLSERASFVEALDKEGIVFIGPPAKAIAAMGDKIESKKLAKEAGVNTVPGSKD 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
            I      +   + I  P ++K   GG   G+ +   D+ +      +          D+
Sbjct: 137 AIDTTEEALKISNEIGYPVMMKASAGGGGKGMRLAWNDKDVEEGFEATKREGLNSFGDDR 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+++ D   +   ++ D   +   +   +        K             +  ++ 
Sbjct: 197 VFIEKFIEDPRHIEIQILADRQGNTLYLNERECSIQRRHQK----VVEEAPSPFVTPEMR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLF---DPLSRKVFWLEINV 264
           K +   A    QA+G       + +    D      ++LE+N 
Sbjct: 253 KAMGEQAVALSQAVGYFSAGTVELIVSGADKTGESFYFLEMNT 295


>gi|270263295|ref|ZP_06191565.1| hypothetical protein SOD_d03120 [Serratia odorifera 4Rx13]
 gi|270042983|gb|EFA16077.1| hypothetical protein SOD_d03120 [Serratia odorifera 4Rx13]
          Length = 449

 Score = 67.5 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 82/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         L  DK+ +   +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAEQIERSGFIFIGPKAETIRLMGDKVSAINAMKKAGVPCVPGSDG 136

Query: 112 -LVNRFTMD--SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
            L +    +      I  P +IK   GG   G+ V++ D+ +   +     ++ +  + D
Sbjct: 137 PLTDDMDKNRAFAKRIGYPVIIKASGGGGGRGMRVVRSDKDLEQSIAMTKAEAKAAFNND 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+Y++    +   V+ D   +   +A           K          PA  I  +
Sbjct: 197 MVYMEKYLENPRHIEIQVLADGQGNAIYLAERDCSMQRRHQK-----VVEEAPAPGITSE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + + +      A   IG RG    +FL+   + + +++E+N 
Sbjct: 252 MRRYIGERCSKACVEIGYRGAGTFEFLY--ENGEFYFIEMNT 291


>gi|253999584|ref|YP_003051647.1| carbamoyl-phosphate synthase large subunit [Methylovorus sp.
           SIP3-4]
 gi|253986263|gb|ACT51120.1| carbamoyl-phosphate synthase, large subunit [Methylovorus sp.
           SIP3-4]
          Length = 1069

 Score = 67.5 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 28/196 (14%), Positives = 75/196 (38%), Gaps = 8/196 (4%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           LE   +P   +   A   + D+ R +Q++   G+   P+         +     I  P V
Sbjct: 648 LEKAGVPIIGTSPDAIDRAEDRERFQQMLQELGLKQPPNRTARTPEEAIRLAQEIGYPLV 707

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++ +   +   + ++   ++   +L+++++ D +E+    + D    
Sbjct: 708 VRPSYVLGGRAMEIVHEQAQLERYMREAVKVSNESPVLLDRFLNDALEVDVDALSDGEDV 767

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           +    +   +       +S  ++  + P  +   +  E++       +A+G  G+    F
Sbjct: 768 IIGGIMEHIEQAGV---HSGDSACSLPPYSLTQAMQDELRVQTVQMAKALGVVGLMNVQF 824

Query: 249 LFDPLSRKVFWLEINV 264
                   V+ LE+N 
Sbjct: 825 AI--QGDVVYVLEVNP 838



 Score = 63.2 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 47/278 (16%), Positives = 97/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D +            + V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPVTWKMVEKIIAIERPDALLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      +LE   +    +   A   + D+ + K  ++  G+    S +
Sbjct: 89  TMGGQTALNCALDLAKHGVLEKYNVELIGASKEAIDKAEDREKFKTAMTKIGLGSARSSV 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     +  Q  I  P +I+P       G  +    +       +    +   +LLIE+
Sbjct: 149 AHSLEEALQVQASIGYPAIIRPSFTMGGSGGGIAYNKEEFLAICERGLEASPTSELLIEE 208

Query: 171 YVDG-IELTCGVMGD-ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D     +   ++   D           +S  V PA+ +    Y+ +
Sbjct: 209 SLLGWKEYEMEVVRDSKDNCIIICSIENLDPMGVHT----GDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P   ++  +E+N 
Sbjct: 265 RNASLAVLREIGVDTGGSNVQFAINPDDGRMIVIEMNP 302


>gi|163782324|ref|ZP_02177322.1| carbamoyl-phosphate synthase large subunit [Hydrogenivirga sp.
           128-5-R1-1]
 gi|159882357|gb|EDP75863.1| carbamoyl-phosphate synthase large subunit [Hydrogenivirga sp.
           128-5-R1-1]
          Length = 534

 Score = 67.5 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 34/227 (14%), Positives = 86/227 (37%), Gaps = 15/227 (6%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--QHLISPPYVIKPL 133
            +    +   +   + D+   ++++   G+    S               I  P +++P 
Sbjct: 101 GVRILGTSPESIDRAEDRELFRELIIELGLRQPESGTARSKDEAVRVASEIGYPVLVRPS 160

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEI 192
                  + ++  ++ +   L ++ S ++   +LI++Y+ D +EL    + D    +   
Sbjct: 161 YVLGGRAMKIVYGEEDLIQYLEEAVSVSYERPILIDKYLKDSVELDVDAVADGEDVLIGA 220

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            +   +       +S  ++  + P  +  ++ +EV+R A    +++  RG+    F    
Sbjct: 221 VMEHIEEAGV---HSGDSAASIPPYTLDDEVVEEVKRQAKAIAKSLDVRGLINLQFAVSE 277

Query: 253 LSRKVFWLEIN-----VQPGMTPVSI-FPEMAAYAGYSFRELLLWMV 293
              +V+ LE+N       P     S+ +P     A  +    L  +V
Sbjct: 278 --GEVYILEVNPRASRTVP-FVSKSVGYPLAKIAAKVALGRKLRELV 321


>gi|281354869|ref|ZP_06241363.1| carbamoyl-phosphate synthase, large subunit [Victivallis vadensis
           ATCC BAA-548]
 gi|281317749|gb|EFB01769.1| carbamoyl-phosphate synthase, large subunit [Victivallis vadensis
           ATCC BAA-548]
          Length = 1088

 Score = 67.5 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 37/263 (14%), Positives = 97/263 (36%), Gaps = 29/263 (11%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAI---- 71
           AL  AG++V  +         D D S  L    L  +     ++      G++       
Sbjct: 594 ALRKAGYEVVMVNSNPETVSTDYDSSDKLYFEPLTLEDV-IAVYEREQCAGVIVQFGGQT 652

Query: 72  -------LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQH 122
                  LE        +       + D+   K++    G+    S + +     ++   
Sbjct: 653 PLNLARQLEAAGANVIGTSPDDIDAAEDRDFFKRLSEKIGIRQPESGIAHNVAEAVEIAD 712

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGV 181
            I  P +++P       G++++ K+  +   +  +++   G  +LI+++++  +EL    
Sbjct: 713 RIGYPLLVRPSFVLGGRGMVIVYKEAYLRKYVEAAAAVAEGKPILIDRFLENAVELDVDC 772

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241
           + D    V    +   +       +S  +++ + P  +  +I ++V+  A    + +   
Sbjct: 773 ISDGRRTVIGAILEHVEPAGI---HSGDSASVIPPMTLSAEIQEKVRAYAREFARELHVC 829

Query: 242 GISRSDFLFDPLSRKVFWLEINV 264
           G+   +        +++ +E+N 
Sbjct: 830 GL--MNMQLAVKDGEIYMIEVNP 850



 Score = 57.4 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 47/279 (16%), Positives = 98/279 (35%), Gaps = 36/279 (12%)

Query: 18  SGKACASALEDAGFKVSQI------------DVDRS---------VGLVLAHLKPDLAFN 56
           SG      L+  GF+V  +              DR+         +  ++   +PD    
Sbjct: 29  SGVQACKVLKREGFEVVLVNSNPATIMTDPEFADRTYIEPLTSDILHEIIRRERPDALLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G    +  ++     IL   ++    +   A + + D+   KQ +   G+ +  S  
Sbjct: 89  TLGGQTALNLAMELEEKGILHRYQVELIGATADAISKAEDRQLFKQTMQGIGLDLPRSGS 148

Query: 113 VNRFTMD---SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            +        +  + S P +I+P       G  +    +     + +  + +   ++LIE
Sbjct: 149 AHSMAEALAVADAIGSWPLIIRPGFTLGGTGGGIAHTPEEFDAIVTRGLAASLNSEVLIE 208

Query: 170 QYVDG-IELTCGVMGDASL-DVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKE 226
           + + G  E    VM D     V   ++   D           +S  V P + +    Y+ 
Sbjct: 209 ESLLGWKEFEMEVMRDKKGNAVIVCSIENLDPMGVHT----GDSITVAPIQTLTDAEYQA 264

Query: 227 VQRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           ++  +    Q+IG   G S   +  +P + +   +E+N 
Sbjct: 265 MRDDSLKVMQSIGVETGGSNVQWAVNPENGRRIIIEMNP 303


>gi|91774016|ref|YP_566708.1| hypothetical protein Mbur_2084 [Methanococcoides burtonii DSM 6242]
 gi|91713031|gb|ABE52958.1| ATP-binding protein with DUF201 domain, pyrrolysine biosynthesis
           [Methanococcoides burtonii DSM 6242]
          Length = 362

 Score = 67.5 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 40/190 (21%), Positives = 73/190 (38%), Gaps = 34/190 (17%)

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGII 142
              A  +SMDK RSK+  +S  +P                   PPY +KP    SS+G  
Sbjct: 94  DFDAYHISMDKKRSKEYFTSIDIPTP-----------GDRPSQPPYFVKPPCESSSIGTH 142

Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSY 202
           +I  D  +          + G  +L+E+Y++G  ++  V+GD                +Y
Sbjct: 143 IIYDDSELA---------DVGPNMLVEEYLEGNVISLEVIGDGKHFAVVKETKVHIDDTY 193

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
           +          + P +       + + +++   Q +  +GI   + +      K+  LEI
Sbjct: 194 D-------CHMITPVEHDP----KFREISYRLAQGLNLKGIMDVEAIVSEKGLKI--LEI 240

Query: 263 NV-QPGMTPV 271
           +   P  TP+
Sbjct: 241 DARFPSQTPI 250


>gi|16330395|ref|NP_441123.1| phosphoribosylglycinamide formyltransferase 2 [Synechocystis sp.
           PCC 6803]
 gi|2500005|sp|Q55336|PURT_SYNY3 RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|558138|gb|AAA85911.1| glycinamide ribonucleotide transformylase [Synechocystis sp.]
 gi|1652885|dbj|BAA17803.1| glycinamide ribonucleotide transformylase [Synechocystis sp. PCC
           6803]
          Length = 391

 Score = 67.5 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 42/248 (16%), Positives = 88/248 (35%), Gaps = 25/248 (10%)

Query: 32  KVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPY-THSGILASALS 90
           +V  +    ++  V+   +PD     +     E      +LEL    Y       A+ L+
Sbjct: 53  EVISMLDGNALEAVVKKYQPDWIVPEVEAIRTE-----KLLELEAGGYRVIPTAQATNLT 107

Query: 91  MDKMRSKQVVSS-CGVPVCPSILVNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVIKKD 147
           M++ R +++ +   GV               +    I  P V+KP+   S  G  V+   
Sbjct: 108 MNRDRIRELAAQQLGVRTARYNYATSLAELEEVSQAIGFPNVVKPVMSSSGKGQSVVNNA 167

Query: 148 QSIPLD--LLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYS-YEL 204
             +        + +     ++++E+++   EL   ++             ++ F      
Sbjct: 168 GEVQQAWSAAIAGARGDQTKVIVEEFIP-FELEITLL------TIRQWQGETLFCDPIGH 220

Query: 205 KYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
           +    +      PA +      + Q +A     A+G  GI   +F   P   +V + E++
Sbjct: 221 RQERGDYQESWQPAPLTQRQLAQAQAIAKTVTDALGGAGIFGVEFFITPE--EVIFSELS 278

Query: 264 VQP---GM 268
            +P   GM
Sbjct: 279 PRPHDTGM 286


>gi|330718634|ref|ZP_08313234.1| carbamoyl-phosphate synthase large subunit [Leuconostoc fallax KCTC
           3537]
          Length = 1059

 Score = 67.5 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 49/287 (17%), Positives = 103/287 (35%), Gaps = 35/287 (12%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQIDVDRS---------------------VGLV 45
           G ++E + S   G   A +L++ G+ V  ++ + +                     +  +
Sbjct: 21  GQAAEFDYS---GTQAALSLKEEGYYVILVNSNPATIMTDAEIADKVYIEPLSLDFMERI 77

Query: 46  LAHLKPDLAFNVLHGNFG----EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           L   +PD     L G  G    +D     IL+ L I    + + A   + D+   K ++ 
Sbjct: 78  LRKERPDAILPTLGGQTGLNMAKDLSEAGILDALGIELLGTKLSAIEEAEDREEFKALME 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
               P+  S +       +        P +++P       G  + K    +         
Sbjct: 138 RLNEPIPESTIATTLDEALAFADQHGYPVIVRPAYTLGGTGGGIAKDHVQLVEIATNGLD 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   Q+L+E+ + G  E+   VM D+S +   + V   + +   +   + +S  V P +
Sbjct: 198 LSPVTQILVERSIAGYKEIEFEVMRDSSDNA--LVVASMENFD-PVGIHTGDSIVVAPVQ 254

Query: 219 -IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +     + ++  A    +A+   G        D  S K + +E+N 
Sbjct: 255 TLSDRELQMMRDAALKIIRALKIEGGVNIQMALDTQSYKYYIIEVNP 301



 Score = 61.3 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/196 (14%), Positives = 67/196 (34%), Gaps = 9/196 (4%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           L+   +    + +     + D+    QV+    +P             + S   I  P +
Sbjct: 646 LQNAGVKILGTTVEDLNRAEDREAFDQVIKDLKLPQPVGKTATTVAEALTSADEIGYPVL 705

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           I+P        + ++  D  +   + ++   ++   +LI+ Y++G E    V+ D    V
Sbjct: 706 IRPSYVLGGRAMEIVANDDELKDYMQRAVKVSNDHPVLIDSYLEGQEAEVDVLSDGETVV 765

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               +   +           +S  V P + +   +  E+   A    + +   G+    F
Sbjct: 766 IPGIMEHIERAGVHS----GDSMSVYPPQYLSQKVQNEMVNAAINLAKRMRTIGLMNVQF 821

Query: 249 LFDPLSRKVFWLEINV 264
           +        + +E+N 
Sbjct: 822 VIHQ--NTAYVIEVNP 835


>gi|156973232|ref|YP_001444139.1| carbamoyl phosphate synthase large subunit [Vibrio harveyi ATCC
           BAA-1116]
 gi|156524826|gb|ABU69912.1| hypothetical protein VIBHAR_00913 [Vibrio harveyi ATCC BAA-1116]
          Length = 1077

 Score = 67.5 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 47/278 (16%), Positives = 96/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++   +         D D              V  ++A  KPD    
Sbjct: 29  SGAQACKALREEGYRAILVNSNPATIMTDPDMADATYIEPIQWEVVRNIIAKEKPDAVLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV--PVCPS 110
            + G    +  +      +LE   +    +   A   + D+ R  + + S G+  P   +
Sbjct: 89  TMGGQTALNCALDLEKHGVLEEFGVEMIGATADAIDKAEDRSRFDKAMKSIGLECPRADT 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                       ++  P +I+P       G  +    +       +    +  ++LLI++
Sbjct: 149 AKTMEEAYAVLDMVGFPCIIRPSFTMGGTGGGIAYNKEEFEEICRRGLDLSPTNELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + + +   A+   D           +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKADNCIIVCAIENFDPMGIHT----GDSITVAPAQTLTDKEYQLM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P   ++  +E+N 
Sbjct: 265 RNASLAVLREIGVETGGSNVQFGINPKDGRMVIIEMNP 302



 Score = 62.1 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 34/196 (17%), Positives = 75/196 (38%), Gaps = 8/196 (4%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH--LISPPYV 129
           LE   +P   +   A   + D+ R +  V   G+    +  V       +    I  P V
Sbjct: 653 LEAAGVPIIGTSPDAIDRAEDRERFQVAVDRLGLLQPENATVTTMEQAVEKSREIGYPLV 712

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           ++P        + ++  +Q +     ++ S ++   +L++ ++D       V  DA  D 
Sbjct: 713 VRPSYVLGGRAMEIVYDEQDLRRYFNEAVSVSNESPVLLDSFLD---DAVEVDIDAICDG 769

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
             + +     +  +    S +S   LPA  +  +I   ++         +G RG+  + F
Sbjct: 770 ERVVIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMREQVEKLAFELGVRGLMNTQF 829

Query: 249 LFDPLSRKVFWLEINV 264
                + +V+ +E+N 
Sbjct: 830 AV--KNNQVYLIEVNP 843


>gi|302547801|ref|ZP_07300143.1| pyruvate carboxylase [Streptomyces hygroscopicus ATCC 53653]
 gi|302465419|gb|EFL28512.1| pyruvate carboxylase [Streptomyces himastatinicus ATCC 53653]
          Length = 1125

 Score = 67.5 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 41/247 (16%), Positives = 85/247 (34%), Gaps = 18/247 (7%)

Query: 28  DAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87
           + G  V        +         D  +   +G   E+  +    E   I +        
Sbjct: 53  EPGHPVRAYLSVEEIVEATRQAGADAVYPG-YGFLSENPDLARACEEAGITFVGPSAETL 111

Query: 88  ALSMDKMRSKQVVSSCGVPVC----PSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIV 143
            L+ +K R+     + GVPV     PS  V+     ++  +  P  +K + GG   G+  
Sbjct: 112 ELTGNKARAVAAARAAGVPVLGSSEPSSDVDELVRAAEE-LGFPVFVKAVAGGGGRGMRR 170

Query: 144 IKKDQSIPLDLLQSSSWNH----GDQLLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSD 198
           +++ + +   +  ++           + +E+  V+   +   ++ DA  +V         
Sbjct: 171 VEEPRLLRESIEAAAREAESAFGDPTVFLEKAVVEPRHIEVQILADAEGNVM-----HLF 225

Query: 199 FYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
                L+        + PA  +  ++ + +   A    + IG R     +FL D     V
Sbjct: 226 ERDCSLQRRHQKVIEMAPAPHLDPELRERICGDAVKFAREIGYRNAGTVEFLLDRDGNHV 285

Query: 258 FWLEINV 264
           F  E+N 
Sbjct: 286 FI-EMNP 291


>gi|254515552|ref|ZP_05127612.1| phosphoribosylglycinamide formyltransferase 2 [gamma
           proteobacterium NOR5-3]
 gi|219675274|gb|EED31640.1| phosphoribosylglycinamide formyltransferase 2 [gamma
           proteobacterium NOR5-3]
          Length = 394

 Score = 67.5 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 50/283 (17%), Positives = 103/283 (36%), Gaps = 50/283 (17%)

Query: 19  GKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILEL---- 74
           GK  A  L+  G +V   D   +   +    +    F +L G       ++A++E+    
Sbjct: 24  GKEVALELQRLGVEVIACDRYANAPAMQVADR-SYVFPMLDGE-----RLRAVIEMEKPD 77

Query: 75  LEIPYT--------------HSGILASA----LSMDKM-RSKQVVSSCGVPVCPSILVNR 115
           L +P                   ++ SA    L+M++    + V  S  +   P    +R
Sbjct: 78  LIVPEIEAIHTDTLAELEDEGFNVVPSARAAQLTMNREGIRRLVAESLDILTSPYRFADR 137

Query: 116 FTM--DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL--QSSSWNHGDQLLIEQY 171
                 +   I  P V+KP+   S  G  V++  + I       Q        +L++E +
Sbjct: 138 QEAFATAIEEIGAPCVVKPIMSSSGKGQSVVRGPEDIQSAWEIGQEGGRAGAGRLIVEGF 197

Query: 172 VDGIELTCGVMGDASLDVTEIAVP---KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           VD  +    ++    +       P   + +   Y   +         P  +  ++ K  +
Sbjct: 198 VD-FDYEITLLTVQHIAGVSFCAPIGHRQEDGDYRESW--------QPHPMDPEVLKHCE 248

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP---GM 268
            +A     A+G +G+   +F      ++V++ E++ +P   GM
Sbjct: 249 DIAARVTGALGGKGLFGVEFFI--KGKEVYFSEVSPRPHDTGM 289


>gi|304314891|ref|YP_003850038.1| carbamoyl-phosphate synthase, large subunit related protein
           [Methanothermobacter marburgensis str. Marburg]
 gi|302588350|gb|ADL58725.1| carbamoyl-phosphate synthase, large subunit related protein
           [Methanothermobacter marburgensis str. Marburg]
          Length = 358

 Score = 67.5 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 44/243 (18%), Positives = 92/243 (37%), Gaps = 25/243 (10%)

Query: 31  FKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAIL-------ELLEIPYTHSG 83
           + +    ++  + + L     D    ++    G DG ++ +        E   IP   SG
Sbjct: 43  YFIVPRGMEAPMEIALRE-DVDAVVPLI----GVDGPLRDVARLKMELEESYGIPVVASG 97

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIV 143
             A+ +S DK+++K+  +   +      L+      +  +   P V+K  +G     I V
Sbjct: 98  ERAAEISTDKLKTKEFFTENAINTPAYGLI----GTADEVKGFPTVLKQREGQGGSNIKV 153

Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYE 203
                 +   L      +H   ++ E+Y+ G+E++  V+         +AV K    S +
Sbjct: 154 ASSGADVEEYLS-----SHDSAIM-EKYIQGVEISVEVLRWDGKTFPLVAVDKGPT-SMD 206

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
             +         PA I      E  ++A    + +G  G +  D +       ++ +E+N
Sbjct: 207 GLHPLGKVKR-APAVIEGFNGDEALKMASRITELLGAEGNTDVDMILS-DDGILYAIEVN 264

Query: 264 VQP 266
            +P
Sbjct: 265 TRP 267


>gi|292491183|ref|YP_003526622.1| alpha-L-glutamate ligase, RimK family [Nitrosococcus halophilus
           Nc4]
 gi|291579778|gb|ADE14235.1| alpha-L-glutamate ligase, RimK family [Nitrosococcus halophilus
           Nc4]
          Length = 301

 Score = 67.5 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 56/286 (19%), Positives = 109/286 (38%), Gaps = 39/286 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50
           +A+L       R   L S +    A ++ G +V  +DV R    + +H            
Sbjct: 3   IAILS------RNAKLYSTRRLIEAAKERGHEVRVLDVLRCYMNIASHRPSIHYKGEDLT 56

Query: 51  -PDLAFNVLHGNFGEDGL-VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV--P 106
             D     L  +    G  V    E++ + Y  S  +A   S DK+RS Q+++  G+  P
Sbjct: 57  DFDAVIPRLGASVTFYGTAVLRQFEMMGV-YPLSESVAITRSRDKLRSLQLLARKGIGLP 115

Query: 107 VCPSILVNRFTMDSQHLISP-PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
           V           D   ++   P VIK L+G   +G+++    ++     +  +       
Sbjct: 116 VTGFAHAPDDIDDLLKMVGGAPVVIKLLEGTQGIGVVLADNKKAAQS--VIEAFMGLKTH 173

Query: 166 LLIEQYVD---GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD 222
           +L+++++    G ++ C V+GD  +   +   P+ +F S   +  +     + P +    
Sbjct: 174 ILVQEFIKEAAGSDIRCFVIGDKVVAAMKRQAPEGEFRSNLHRGGTATLVRITPEE---- 229

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268
                +  A  A Q +G       D      +     +E+N  PG+
Sbjct: 230 -----RSTAIRAAQTMGLNVAG-VD--VLRSNHGPLVMEVNSSPGL 267


>gi|239917101|ref|YP_002956659.1| acetyl/propionyl-CoA carboxylase, alpha subunit [Micrococcus luteus
           NCTC 2665]
 gi|281414437|ref|ZP_06246179.1| acetyl/propionyl-CoA carboxylase, alpha subunit [Micrococcus luteus
           NCTC 2665]
 gi|239838308|gb|ACS30105.1| acetyl/propionyl-CoA carboxylase, alpha subunit [Micrococcus luteus
           NCTC 2665]
          Length = 618

 Score = 67.5 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 71/220 (32%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+      +    + +      A     DK+ ++Q+ +  G P+ P    
Sbjct: 98  AVHPGYGFLSENADFARAVADAGLVWIGPPAEAIDRLGDKVSARQLATKVGAPLAPGTTS 157

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL----DLLQSSSWNHGDQ 165
            +      +        P  IK   GG   GI V +  + IP      + ++ +     +
Sbjct: 158 PVTGTEEVVAFADEFGLPVAIKAAYGGGGRGIKVARTREEIPEFYESAVREAVAAFGRGE 217

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             +E+++D    +    + D   DV  I+           K             +  +  
Sbjct: 218 CFVERFLDKPRHVETQCLADVHGDVVVISTRDCSLQRRNQK----LVEEAPAPFLTDEQN 273

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +   +    +  G  G    +FL       + +LE+N 
Sbjct: 274 ARLVESSKAILREAGYVGAGTCEFLV-GQDGTISFLEVNT 312


>gi|171463628|ref|YP_001797741.1| acetyl-CoA carboxylase, biotin carboxylase [Polynucleobacter
           necessarius subsp. necessarius STIR1]
 gi|171193166|gb|ACB44127.1| acetyl-CoA carboxylase, biotin carboxylase [Polynucleobacter
           necessarius subsp. necessarius STIR1]
          Length = 678

 Score = 67.5 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 71/220 (32%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+       E   I +      + A    K+ SK++     V   P    
Sbjct: 81  AVHPGYGFLSENEQFTKRCEEEGIVFIGPKYQSIAAMGGKIASKKLALEAKVNTIPGYNE 140

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
            I  N   +     I  P +IK   GG   G+ V   D+          +        D+
Sbjct: 141 AIDTNEEAVKIAQGIGYPVMIKASAGGGGKGLRVAFNDKEAAEGFAACKTEAMNSFGDDR 200

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE++V D   +   V+GD+  +V  +            K             I     
Sbjct: 201 IFIEKFVEDPRHIEIQVLGDSHGNVVYLNERDCSIQRRHQK----VIEEAPSPFIDPATR 256

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K +   A    +A+  +     +F      +  ++LE+N 
Sbjct: 257 KAMGEQAVALAKAVNYQSAGTVEF-VVGKDKSFYFLEMNT 295


>gi|121610335|ref|YP_998142.1| carbamoyl-phosphate synthase L chain, ATP-binding
           [Verminephrobacter eiseniae EF01-2]
 gi|121554975|gb|ABM59124.1| Carbamoyl-phosphate synthase L chain, ATP-binding
           [Verminephrobacter eiseniae EF01-2]
          Length = 696

 Score = 67.5 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 74/220 (33%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+       E   I +      + A   DK+ S+++  + GV   P    
Sbjct: 91  AVHPGYGFLSENPDFARRCEEEGIVFIGPKAHSIAAMGDKIASRKLAQAAGVHTIPGHNE 150

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
            I       +    I  P +IK   GG   G+ V   DQ +        S        ++
Sbjct: 151 AIGSPEQAREIARSIGYPVMIKASAGGGGKGLRVAGNDQEVVEGFASCRSEARNSFGDER 210

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE++V     +   V+GD+  ++  +   +        K             I     
Sbjct: 211 VFIEKFVQQPRHIEIQVLGDSHGNLIYLNERECSLQRRHQK----VIEEAPSPFISDATR 266

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +   A    +A+  +     +F      +  ++LE+N 
Sbjct: 267 QAMGAQAVQLAKAVQYQSAGTVEF-VVGKEQDFYFLEMNT 305


>gi|330807472|ref|YP_004351934.1| Carbamoyl-phosphate synthase (ammonia), large chain [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
 gi|327375580|gb|AEA66930.1| Carbamoyl-phosphate synthase (ammonia), large chain [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 1073

 Score = 67.5 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 29/196 (14%), Positives = 73/196 (37%), Gaps = 8/196 (4%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYV 129
           LE   +P   +   A   + D+ R +Q+V    +   P+  V        +   I  P V
Sbjct: 653 LEAAGVPIIGTSPDAIDRAEDRERFQQMVERLNLRQPPNATVRSEDEAIRAAAKIGYPLV 712

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLD 188
           ++P        + ++ ++  +   L ++   ++   +L++ +++  IE+    + D    
Sbjct: 713 VRPSYVLGGRAMEIVYQEDELKRYLREAVQVSNDSPVLLDHFLNCAIEMDVDAVSDGKDV 772

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           V    +   +       +S  ++  + P  +P  I  E++        A+    I   + 
Sbjct: 773 VIGAIMQHIEQAGV---HSGDSACSLPPYSLPAHIQDEMREQVKKM--ALELGVIGLMNV 827

Query: 249 LFDPLSRKVFWLEINV 264
                   ++ +E+N 
Sbjct: 828 QLALQGEDIYVIEVNP 843



 Score = 61.7 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 96/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +              D         ++V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPAMADATYIEPIKWQTVAKIIEKERPDALLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +    + +LE   +    +       + D+ R  + + S G+    S +
Sbjct: 89  TMGGQTALNCALDLEREGVLEKFGVEMIGANADTIDKAEDRSRFDKAMKSIGLDCPRSGI 148

Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     +     +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHSMEEANAVLERLGFPCIIRPSFTMGGTGGGIAYNREEFEEICARGLDLSPTKELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D   + +   ++   D           +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKKDNCIIVCSIENFDPMGVHT----GDSITVAPAQTLTDKEYQIL 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F   P + ++  +E+N 
Sbjct: 265 RNASLAVLREIGVETGGSNVQFGICPNTGRMVVIEMNP 302


>gi|327398301|ref|YP_004339170.1| pyruvate carboxylase [Hippea maritima DSM 10411]
 gi|327180930|gb|AEA33111.1| pyruvate carboxylase [Hippea maritima DSM 10411]
          Length = 1143

 Score = 67.5 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 54/279 (19%), Positives = 95/279 (34%), Gaps = 31/279 (11%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFK--VSQIDVDRSVGLVLAHLKPDLAFNVL 58
           +AV     S E + SL   KA  + L   G     + +++D  + L L     D     +
Sbjct: 30  VAV----YSEEDKYSLHRYKADEAYLIGKGLDPVAAYLNIDEIIDLALRK-GVD----AI 80

Query: 59  HGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----I 111
           H  +G   E        +   I +         L  DK+ SKQV   CGVPV       I
Sbjct: 81  HPGYGFLSESAEFARRCQEAGIIFIGPKPEVVELFGDKLISKQVAKKCGVPVVEGSDKNI 140

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP-----LDLLQSSSWNHGDQL 166
                  +    I  P ++K   GG   GI ++  D+ I      L     +S+   D +
Sbjct: 141 ASIDEAKEFAKSIGYPVMLKATAGGGGRGIRIVFNDKDIEDNFDSLRREALNSFGRDDVI 200

Query: 167 LIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYK 225
           + +       +   ++ D   ++  +            K        + P   +P  + +
Sbjct: 201 MEKYLPAPKHIEVQILADNHGNIVHLYERNCSIQRRHQKM-----IEIAPSPSVPGSVLE 255

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +   +       G    +  +FL     R  ++LE+N 
Sbjct: 256 ALYDASLKIAAETGITSAATIEFLV--QDRDFYFLEVNP 292


>gi|291279606|ref|YP_003496441.1| carbamoylphosphate synthase large subunit [Deferribacter
           desulfuricans SSM1]
 gi|290754308|dbj|BAI80685.1| carbamoylphosphate synthase, large subunit [Deferribacter
           desulfuricans SSM1]
          Length = 1075

 Score = 67.5 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 50/278 (17%), Positives = 99/278 (35%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVDRSVGL------------VLAHLKPDLAFN 56
           SG     AL++ G++V  +         D + +               ++   +PD    
Sbjct: 29  SGSQAVKALKEEGYRVVLVNSNPATIMTDPEFADATYIEPLTVEIVEKIIKKEQPDAILP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      +LE   +    + I A   + D+   K+ ++  G+ +  S  
Sbjct: 89  TVGGQTALNLAIDLHKARVLEKYNVELIGAKIDAIQKAEDRELFKKAMAKIGLDMPKSAY 148

Query: 113 VNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           VN +   M     I  P +I+P       G  V    +     ++     +  +++L+E+
Sbjct: 149 VNSYDEAMKVIKDIGFPAIIRPSFTLGGTGGNVAYNMEEYREYVIWGLEASPVNEILVEE 208

Query: 171 YVDG-IELTCGVMGD-ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            + G  E+   VM D     V    +   D           +S  V P + +    Y+ +
Sbjct: 209 SIIGWKEIELEVMRDLKDNVVIICGIENFDPMGVHT----GDSITVAPIQTLTDKEYQYL 264

Query: 228 QRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
           +  A    + IG   G S   F  DP + +   +E+N 
Sbjct: 265 RDAAIKVIREIGVDTGGSNVQFAVDPKTGRQVIIEMNP 302



 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 35/262 (13%), Positives = 97/262 (37%), Gaps = 27/262 (10%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ------ 69
           AL + G++   +         D D S  L    L  +   N++        +VQ      
Sbjct: 587 ALREVGYETIMVNCNPETVSTDYDTSDRLYFEPLTFEHVMNIIEKENPYGVIVQFGGQTP 646

Query: 70  ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQHL 123
                 LE   +    +   +  ++ D+ R ++++    +    + +   F   ++    
Sbjct: 647 LKLAVPLEKAGVNILGTSPDSIDIAEDRERFQKLLKDINLKQPDNGIAKNFEEALNIAEN 706

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVM 182
           I  P V++P        + ++    S+   +  +   +    +LI+++++  IE+    +
Sbjct: 707 IGYPVVVRPSYVLGGRAMEIVYDQDSLKNYMKYAVEASEEHPVLIDKFLENAIEVDVDAI 766

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  ++  + P  +  +I +E++R      + +  +G
Sbjct: 767 SDGESTIVAGIMQHIEEAGI---HSGDSACSIPPRSLSDEIIEEIKRATISLAEKLNVKG 823

Query: 243 ISRSDFLFDPLSRKVFWLEINV 264
           +   +  +     +++ LE+N 
Sbjct: 824 L--MNVQYAIKDNQLYVLEVNP 843


>gi|302525973|ref|ZP_07278315.1| acetyl-CoA carboxylase, biotin carboxylase [Streptomyces sp. AA4]
 gi|302434868|gb|EFL06684.1| acetyl-CoA carboxylase, biotin carboxylase [Streptomyces sp. AA4]
          Length = 650

 Score = 67.5 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 39/216 (18%), Positives = 81/216 (37%), Gaps = 20/216 (9%)

Query: 58  LHGNFG---ED-GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
           +H  +G   E+ G  +A+L+   + +      A      K+ SK+++++ GVPV     +
Sbjct: 78  IHPGYGFLSENAGFARAVLD-AGLTWIGPPAAAIETMGSKVESKRLMAAAGVPV-----L 131

Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN----HGDQLLIE 169
           +     S      P ++K   GG   G+ V++    +   +  + +          +  E
Sbjct: 132 SELDPASVTSDDLPLLVKASAGGGGRGMRVVRSLDELAEAVESARAEAGSAFGDPTVFCE 191

Query: 170 QYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           +Y++ G  +   V+ D+   V  +   +        K             +   +  E+ 
Sbjct: 192 RYLETGRHIEVQVLADSHGTVWAVGERECSIQRRHQK----VVEEAPSPFVDDAMRAELF 247

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             A  A QAI   G    +F       + ++LE+N 
Sbjct: 248 DAARKAAQAIDYVGAGTVEF-LAGPDGRFYFLEMNT 282


>gi|229817328|ref|ZP_04447610.1| hypothetical protein BIFANG_02590 [Bifidobacterium angulatum DSM
           20098]
 gi|229785117|gb|EEP21231.1| hypothetical protein BIFANG_02590 [Bifidobacterium angulatum DSM
           20098]
          Length = 1127

 Score = 67.5 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 44/288 (15%), Positives = 103/288 (35%), Gaps = 36/288 (12%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQIDVDRS---------------------VGLV 45
           G ++E + S   G      L + G +V  ++ + +                     +  +
Sbjct: 21  GQAAEFDYS---GTQACRVLREEGIRVILVNSNPATIMTDPEMADATYIEPIATPILERI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +A  +PD     L G    +  +      +L+   +    + + A     D+   K+VV 
Sbjct: 78  IAKERPDALLPTLGGQTALNAAMALGEAGVLKKYNVELIGASLDAIDRGEDRELFKKVVE 137

Query: 102 SCGVPVCPSILVNRFTMDS--QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G     S + +              P V++P      LG  +   ++ +         
Sbjct: 138 KAGAESARSQIAHSLAEVDKIAEEFGYPLVVRPSFTMGGLGSGIAHDEEELHRIAGAGIH 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
           ++  D++LIE+ ++G  E    +M D + +V  +   ++      +   + +S  V P  
Sbjct: 198 YSPTDEVLIEEGIEGWKEFELELMRDRNDNVVVVCPIENVD---PVGVHTGDSITVAPCF 254

Query: 219 -IPLDIYKEVQRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
            +    Y++++ +     + +G   G     F   P + ++  +E+N 
Sbjct: 255 TLTDREYQKLRDIGIAIIRGVGVDTGGCNIQFAIHPKTGRIIVIEMNP 302



 Score = 50.5 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 31/242 (12%), Positives = 77/242 (31%), Gaps = 29/242 (11%)

Query: 67  LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTMDSQHLI 124
            + A L+   +P   +   A  L+ ++    +V+    +        L      ++ H I
Sbjct: 651 SLAARLKAAGVPILGTTPEAIDLAENRELFGEVLKKAKMNAPRYGTALSLEEAQEAAHSI 710

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
             P +++P       G+ ++  +  +   + ++      D +     V G   +  ++  
Sbjct: 711 GYPVLVRPSYVLGGRGMEIVYDNAQLEKYVERALDEAKADTV-----VSGRLPSPLLIDK 765

Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK--------------IPLDIYKEVQRL 230
              D  EI V     +  E  Y      H+  A               + +D  + ++  
Sbjct: 766 FLQDAIEIDV--DALFDGEELYIGGIMEHIEEAGVHSGDAACTLPPNTLSVDQIRRLREG 823

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
            +   +    +G+    + F      ++ +E N +   T     P  +   G    +   
Sbjct: 824 TYAIAKGCNVQGLINVQYAFMA--NTLYVIEANPRASRT----VPFASKATGVPLAKAAA 877

Query: 291 WM 292
            +
Sbjct: 878 RI 879


>gi|169403188|emb|CAQ15966.1| putative biotin carboxylase [uncultured bacterium]
          Length = 163

 Score = 67.5 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 25/130 (19%), Positives = 46/130 (35%), Gaps = 11/130 (8%)

Query: 58  LHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS---- 110
           +H  +G   E+     I E   I +         +  DK+ ++Q V   GVP+ P     
Sbjct: 1   IHPGYGFLSENAGFADICEECGITFIGPSPENMRVMGDKILARQAVIEHGVPIVPGTKGQ 60

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG----DQL 166
             +     +    I  P +IKP  GG   G+ ++    ++      + +          +
Sbjct: 61  REICDEAWNIAKEIGFPVIIKPTAGGGGRGMKIVHSQATLANAFASARAEALQLLVMQNV 120

Query: 167 LIEQYVDGIE 176
            IE+Y     
Sbjct: 121 YIEKYPVLKP 130


>gi|322369184|ref|ZP_08043749.1| phosphoribosylaminoimidazole carboxylase, ATPase subunit
           [Haladaptatus paucihalophilus DX253]
 gi|320550916|gb|EFW92565.1| phosphoribosylaminoimidazole carboxylase, ATPase subunit
           [Haladaptatus paucihalophilus DX253]
          Length = 388

 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 39/202 (19%), Positives = 77/202 (38%), Gaps = 26/202 (12%)

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQHLISPPYVI 130
           E  ++P  H          DK+  K+ +   G+PV     V+     +++      P ++
Sbjct: 88  EEYDVP-VHPDPATLRTIQDKLVQKRALQDRGIPVPDFRPVDSREDLLEAGEEFGYPMML 146

Query: 131 KPLKGG-SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTC-GVMGDAS- 186
           K  +GG    G + ++ +  +   L Q S      +L++E++V    EL+   V GD   
Sbjct: 147 KARRGGYDGRGNVPVEDEDDVDNALSQVS-----GELMVEEFVPFERELSVIAVKGDDEV 201

Query: 187 --LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244
               V E  V + +               V+PA+   ++ +  + +A     A+  RG  
Sbjct: 202 ATFPVGEN-VHEEEIL----------RQTVVPARTSDEVRERAEDVAREVLSALSGRGTY 250

Query: 245 RSDFLFDPLSRKVFWLEINVQP 266
             +   +     +   EI  +P
Sbjct: 251 GIELF-EGEDGDISVNEIAPRP 271


>gi|320355375|ref|YP_004196714.1| carbamoyl-phosphate synthase large subunit [Desulfobulbus
           propionicus DSM 2032]
 gi|320123877|gb|ADW19423.1| carbamoyl-phosphate synthase large subunit [Desulfobulbus
           propionicus DSM 2032]
          Length = 1068

 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 53/278 (19%), Positives = 102/278 (36%), Gaps = 36/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+++  +              DV         ++  ++A  +PD    
Sbjct: 29  SGTQACKALRELGYRIVLVNSNPATIMTDPGMADVTYIEPLNVDTLEKIIARERPDALLP 88

Query: 57  VLHG----NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G    N   D     ILE   +      + A     D++  K+ +   G+ +  S  
Sbjct: 89  NLGGQSALNLSSDLARLGILEKYGVQVIGVNLEAIERGEDRIEFKKEMDRLGIEMPRSTA 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           V            +  P VI+P       G  ++   + +     +  + +   Q+L+E+
Sbjct: 149 VYSVEDAERIAAELGYPVVIRPAYTMGGTGGGMVYNLEELRTVATRGIAASRIGQILVEE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI---PLDIYKE 226
            V G  EL   V+ DA   +  +   ++                   A +   P+++ + 
Sbjct: 209 CVIGWEELELEVVRDADNRLITVCFIENI-----DPMGVHTGDSFCAAPMLTVPVELQQR 263

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +QR A+   ++IG  G +   F  DP++ +V  +EIN 
Sbjct: 264 LQRAAYAIVESIGVIGGTNVQFAHDPVTDRVVVIEINP 301



 Score = 59.8 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 29/228 (12%), Positives = 79/228 (34%), Gaps = 18/228 (7%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-ILVNRFTMDS-QHLISPPYV 129
           LE   +    +      ++ D+    +++   G+P+    + VN     +    I  P +
Sbjct: 647 LEEAGVTILGTPPAVIDMAEDRDLFNRMMEKLGIPMAAGGMAVNEEEAVAIAGQIGYPLM 706

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG----DA 185
           ++P       G+ ++  +  +   +  +        +LI++Y++              DA
Sbjct: 707 VRPSYVLGGRGMEIVYDEPMLRDYMAAAVDVTPDRPILIDRYLENAIEAEADAIADGTDA 766

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
            +      + ++  +S        ++  + P  IP      ++       + +G  G+  
Sbjct: 767 FVPAVMEHIEQAGIHS------GDSACVIPPVGIPEHHIATIREYTRTIAREMGVVGL-- 818

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            +  +     +V+ LE N +   T     P ++   G     +   ++
Sbjct: 819 MNIQYAICDDRVYVLEANPRASRT----VPLVSKVCGIPMARIATEIL 862


>gi|298291563|ref|YP_003693502.1| carbamoyl-phosphate synthase L chain ATP-binding protein [Starkeya
           novella DSM 506]
 gi|296928074|gb|ADH88883.1| Carbamoyl-phosphate synthase L chain ATP-binding protein [Starkeya
           novella DSM 506]
          Length = 466

 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 41/220 (18%), Positives = 84/220 (38%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---S 110
            +H  +G   E+     ++E   + +            DK R++Q   + GVP  P    
Sbjct: 78  AVHPGYGFLSENADFAQMVEEAGLVFIGPRPETIRQMGDKARARQEAQAAGVPTVPGTEG 137

Query: 111 ILVNRFTMDSQHL-ISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGDQ 165
           ++ +  T  ++   I  P +IK   GG   GI V + +  +    P    ++ +      
Sbjct: 138 VVADLDTAKAEAARIGYPVMIKAAAGGGGRGIRVARHEAELATLFPQASGEARAAFGDGG 197

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           L +E+++     +   V+GD    V           S + +   +       A +  +  
Sbjct: 198 LYLERFIGRARHIEVQVLGDGKRAVHLFE----RECSLQRRRQKVW-EEAPAACLTSEQR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +   A    + +G RG    ++LFD  + + F++E+N 
Sbjct: 253 VALCDSAVRLAERVGYRGAGTLEYLFDDETGEFFFIEMNT 292


>gi|190360224|sp|A8AIR5|RIMK_CITK8 RecName: Full=Ribosomal protein S6 modification protein
          Length = 300

 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 42/203 (20%), Positives = 86/203 (42%), Gaps = 21/203 (10%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGV--PVCPSILVNRFTMDSQHLISP-PY 128
            E+L   Y  +  +A   + DK+RS Q+++  G+  PV         T D   ++   P 
Sbjct: 80  FEMLG-SYPLNESVAITRARDKLRSLQLLARQGIDLPVTGIAHSPDDTSDLIDMVGGAPL 138

Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD---GIELTCGVMGDA 185
           V+K ++G   +G+++ +  Q+     +  +       +L+++Y+    G ++ C V+GD 
Sbjct: 139 VVKLVEGTQGIGVVLAETRQAAES--VIDAFRGLNAHILVQEYIKEARGRDIRCLVVGDE 196

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
            +   E    + DF S   +    +   + P +         + +A  A Q +G   ++ 
Sbjct: 197 VVAAIERRAKEGDFRSNLHRGGMASIASITPRE---------REIAIKAAQTMGL-DVAG 246

Query: 246 SDFLFDPLSRKVFWLEINVQPGM 268
            D       R    +E+N  PG+
Sbjct: 247 VD--ILRAERGPLVMEVNASPGL 267


>gi|194477256|ref|YP_002049435.1| carbamoyl-phosphate synthase, large subunit [Paulinella
           chromatophora]
 gi|171192263|gb|ACB43225.1| carbamoyl-phosphate synthase, large subunit [Paulinella
           chromatophora]
          Length = 1100

 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 59/279 (21%), Positives = 101/279 (36%), Gaps = 36/279 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL   G++V  I         D D              V  V+   +PD    
Sbjct: 29  SGTQACKALRAEGYEVVLINSNPASIMTDPDMADRTYIEPLTPEVVTRVIELERPDALLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  V      ILE   +    + + A   + D++  KQ +    V VCPS +
Sbjct: 89  TMGGQTALNLAVTLARVGILERFGVELIGANLQAIQKAEDRLLFKQAMERIEVHVCPSGI 148

Query: 113 ---VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
              +       + + S P +I+P       G  +    +       +    +   Q+LIE
Sbjct: 149 ASNLEEAKEVGETIGSYPRIIRPAFTLGGSGGGIAYNPEEFFAICKEGLEASPVSQILIE 208

Query: 170 QYVDG-IELTCGVMGDASLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPAK-IPLDIYKE 226
           Q + G  E    VM D + +V  I   ++ D           +S  V PA+ +    Y+ 
Sbjct: 209 QSLLGWKEFELEVMRDTADNVVIICSIENLDPMGVHT----GDSITVAPAQTLTDREYQR 264

Query: 227 VQRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
           ++  +    + IG   G S   F  +P+  +V  +E+N 
Sbjct: 265 LRDQSIAIIREIGVDTGGSNIQFAINPVDGEVVVIEMNP 303



 Score = 48.6 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/216 (14%), Positives = 72/216 (33%), Gaps = 13/216 (6%)

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYVIKPLKGGSS 138
            +   +  L+ D+ + + ++    +    + L    +        +  P V++P      
Sbjct: 687 GTSPKSIDLAEDREQFEAILRQLNIRQPRNGLARSESEALLVADNVGYPVVVRPSYVLGG 746

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD 198
             + V+     +   + ++        +LI+QY++    +  V  DA  D+ +  V    
Sbjct: 747 RAMEVVFDKADLKRYINEAVKVEPNHPVLIDQYLEN---SIEVDVDAICDINQQVVIGGL 803

Query: 199 FYSYELKYSS-LNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256
               E       +S   LPA  +       ++  +     A+   G+    F       +
Sbjct: 804 MEHIEPAGIHSGDSACCLPAISLSNKTLDIIREWSKDLAIALEVNGLINLQFAV--QGEQ 861

Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           V+ +E N +   T     P +A   G     +   +
Sbjct: 862 VYIIEANPRASRT----IPFVAKATGVPLARIASQL 893


>gi|238026175|ref|YP_002910406.1| acetyl-CoA carboxylase biotin carboxylase subunit [Burkholderia
           glumae BGR1]
 gi|237875369|gb|ACR27702.1| Acetyl-CoA carboxylase, biotin carboxylase [Burkholderia glumae
           BGR1]
          Length = 455

 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 78/222 (35%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H  +G   E+      +E     +         L  DK+ +KQ +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAERVEQSGFTFIGPRPDTIRLMGDKVTAKQTMIRTGVPCVPGSEG 136

Query: 113 ----VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
                 +  +     I  P +IK   GG   G+ V+  + ++   +     ++       
Sbjct: 137 ALPDDPKEIVKIARAIGYPVIIKASGGGGGRGMRVVHTEAALVNAVNMTREEAGRAFGNP 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
           Q+ +E+Y++    +   V+ DA  +   +            K          PA  I   
Sbjct: 197 QVYMEKYLENPRHIEIQVLADAHKNALWLGERDCSMQRRHQK-----VIEEAPAPGIARR 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +   +      A + +G  G    +FL+   + + +++E+N 
Sbjct: 252 LIDRIGDRCADACKKMGYLGAGTFEFLY--ENNEFYFIEMNT 291


>gi|193215448|ref|YP_001996647.1| phosphoribosylaminoimidazole carboxylase, ATPase subunit
           [Chloroherpeton thalassium ATCC 35110]
 gi|193088925|gb|ACF14200.1| phosphoribosylaminoimidazole carboxylase, ATPase subunit
           [Chloroherpeton thalassium ATCC 35110]
          Length = 383

 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 41/200 (20%), Positives = 75/200 (37%), Gaps = 14/200 (7%)

Query: 71  ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH--LISPPY 128
            LE L  P             DK   K V+   G+PV     ++      +    +  P+
Sbjct: 87  FLESLGKP-VFPSSKTLKQIQDKFTQKTVLKDHGLPVSQFYPIDSENAAYECGKNLGYPF 145

Query: 129 VIKPLKGG-SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDAS 186
           +IK  K G    G   +  +  IP  L +    NH   +  E ++D  +EL   +    +
Sbjct: 146 LIKRRKHGYDGYGNRTVHSEHDIPQALAELGFPNHS--VYAEGFIDFELELATMIARSKT 203

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRS 246
            ++    V ++   ++  KY       + PA++   +  EV  LA  A + +   GI   
Sbjct: 204 GEIVTYPVVETIQENHICKYV------IAPARLSSTLIDEVISLAKSAIERLDGVGIFGV 257

Query: 247 DFLFDPLSRKVFWLEINVQP 266
           +   D  +  +   E+  +P
Sbjct: 258 EMFLDTDAN-ILINELAPRP 276


>gi|218550540|ref|YP_002384331.1| acetyl-CoA carboxylase biotin carboxylase subunit [Escherichia
           fergusonii ATCC 35469]
 gi|218358081|emb|CAQ90727.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           fergusonii ATCC 35469]
          Length = 449

 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 81/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         L  DK+ +   +   GVP  P    
Sbjct: 77  AIHPGYGFLSENANFAEQVERSGFIFIGPKADTIRLMGDKVSAIAAMKKAGVPCVPGSDG 136

Query: 112 -LVNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
            L +    +      I  P +IK   GG   G+ V++ D  +   +     ++ +  + D
Sbjct: 137 PLGDDMDKNRAIAKRIGYPVIIKASGGGGGRGMRVVRGDAELAQSISMTRAEAKAAFNND 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+Y++    +   V+ D   +   +A           K          PA  I  +
Sbjct: 197 MVYMEKYLENPRHVEIQVLADGQGNAIYLAERDCSMQRRHQK-----VVEEAPAPGITPE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + + +      A   IG RG    +FLF   + + +++E+N 
Sbjct: 252 LRRYIGERCAKACVDIGYRGAGTFEFLF--ENGEFYFIEMNT 291


>gi|114328621|ref|YP_745778.1| acetyl-CoA carboxylase biotin carboxylase subunit [Granulibacter
           bethesdensis CGDNIH1]
 gi|114316795|gb|ABI62855.1| biotin carboxylase [Granulibacter bethesdensis CGDNIH1]
          Length = 456

 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 79/220 (35%), Gaps = 18/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     ++E   + +         +  DK+ +K  ++S  VP+ P    
Sbjct: 83  AIHPGYGFLSENADFAEMVEAHGLTFIGPSPSHIRMMGDKIEAKHAMASLNVPLVPGSAG 142

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSWNHGDQ 165
            +            +  P +IK   GG   G+ V   +  +     L   ++++    D 
Sbjct: 143 VVSDMEEARAVADRVKYPVLIKAAAGGGGRGMKVAHDESELAEAWRLARTEAAAAFGNDA 202

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+Y+D    +   V+ D+  +V  +            K          PA +  +  
Sbjct: 203 VYIEKYLDKPRHIELQVLADSHGNVVHLGERDCSLQRRHQKLLEEAG---SPA-LTAEER 258

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +  +     + +G R     +FL+     +  ++E+N 
Sbjct: 259 DRIGEVVTSGLRKLGYRNAGTLEFLY--QDGQFAFIEMNT 296


>gi|332998376|gb|EGK17975.1| acetyl-CoA carboxylase, biotin carboxylase [Shigella flexneri VA-6]
          Length = 449

 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 80/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         L  DK+ +   +   GVP  P    
Sbjct: 77  AIHPGYGFLSENANFAEQVERSGFIFIGPKAETIRLMGDKVSAIAAMKKAGVPCVPGSDG 136

Query: 112 -LVNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
            L +    +      I  P +IK   GG   G+ V++ D  +   +     ++ +    D
Sbjct: 137 PLGDDMDKNRAIAKRIGYPVIIKASGGGGGRGMRVVRGDAELAQSISMTRAEAKAAFSND 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+Y++    +   V+ D   +   +A           K          PA  I  +
Sbjct: 197 MVYMEKYLENPRHIEIQVLADGQGNAIYLAERDCSMQRRHQK-----VVEEAPAPGITPE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + + +      A   IG RG    +FLF   + + +++E+N 
Sbjct: 252 LRRYIGERCAKACVDIGYRGAGTFEFLF--ENGEFYFIEMNT 291


>gi|328466842|gb|EGF37956.1| pyruvate carboxylase [Listeria monocytogenes 1816]
          Length = 1100

 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 35/243 (14%), Positives = 82/243 (33%), Gaps = 25/243 (10%)

Query: 35  QIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSM 91
            +D+  ++  +      D     +H  +G   E+       E   I +         +  
Sbjct: 63  YLDI-ENIIEIAKESGAD----AIHPGYGFLSENIEFARRCEQEGIIFVGPKSKHLDMFG 117

Query: 92  DKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK- 146
           DK+++K+      +PV P     +   +   +       P +IK   GG   G+ V++  
Sbjct: 118 DKIKAKEQALLADIPVIPGSNGPVAGIKEVEEFGEKNGYPLMIKASLGGGGRGMRVVESK 177

Query: 147 ---DQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSY 202
               +S      ++ +    D++ +E+ V +   +   ++GD   ++  +          
Sbjct: 178 EHVKESFERASSEAKAAFGNDEVYVEKCVMNPKHIEVQILGDTHGNIVHLFERDCSIQRR 237

Query: 203 ELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
             K        V P   I  ++   +   A    + +        +FL        +++E
Sbjct: 238 HQK-----VVEVAPCNAITSELRNRICDAAVKLMKNVDYINAGTVEFLV--EGDDFYFIE 290

Query: 262 INV 264
           +N 
Sbjct: 291 VNP 293


>gi|313835192|gb|EFS72906.1| hypothetical protein HMPREF9621_02809 [Propionibacterium acnes
          HL037PA2]
 gi|314929164|gb|EFS92995.1| hypothetical protein HMPREF9607_00846 [Propionibacterium acnes
          HL044PA1]
 gi|314970886|gb|EFT14984.1| hypothetical protein HMPREF9622_01951 [Propionibacterium acnes
          HL037PA3]
          Length = 69

 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 30/54 (55%)

Query: 1  MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLA 54
          + VL GG+S +R++SL SG+  A AL   G +V + D+D S+   L   +    
Sbjct: 5  VVVLAGGLSHQRDISLKSGRTVAQALRRVGHEVVEADIDSSLIETLRCRRVSHV 58


>gi|312129029|ref|YP_003996369.1| carbamoyl-phosphate synthase, large subunit [Leadbetterella
           byssophila DSM 17132]
 gi|311905575|gb|ADQ16016.1| carbamoyl-phosphate synthase, large subunit [Leadbetterella
           byssophila DSM 17132]
          Length = 947

 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 40/292 (13%), Positives = 97/292 (33%), Gaps = 62/292 (21%)

Query: 11  EREVSLSSGKACASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGN 61
           E + S        +A +++G++   I         D D S  L    +  +  F+++   
Sbjct: 583 EFDYSCV--HGVLAA-KESGYETIMINCNPETVSTDPDISDKLYFEPVFWENVFDIIE-Y 638

Query: 62  FGEDGLV-----QAILEL------LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
              DG++     Q  L++        +    +   A  L+ D+ R    +    +P    
Sbjct: 639 EKPDGVIVQLGGQTALKMAEKLTKYGVKIIGTSYEALDLAEDRGRFSTKLQELNIPYPKF 698

Query: 111 ILVNRFTMDSQ--HLISPPYVIKPLK--GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQL 166
             V      S+    +  P +++P    GG S+ I++   ++ +   +++  +    + +
Sbjct: 699 DTVRTADKASEVAKELGFPLLVRPSYVLGGQSMKIVI--NEEELEQHVVKILNDIPDNNI 756

Query: 167 LIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA--------- 217
           L++ +++                  I          E  Y      H+ PA         
Sbjct: 757 LLDHFLEN----------------AIEAEADAICDGEDAYIIGIMEHIEPAGIHSGDSYA 800

Query: 218 -----KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
                 +  ++ ++++        A+  +G+    F        V+ +E N 
Sbjct: 801 VLPPFDLSENVLRQIEEYTKKIAIALDTKGLINIQFAI--KDEVVYVIEANP 850



 Score = 58.6 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 38/201 (18%), Positives = 73/201 (36%), Gaps = 10/201 (4%)

Query: 70  AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPP 127
            I +   I      I A   + D+   ++ +    V VC       F    +       P
Sbjct: 111 GIWKKHNIEIIGVDIKAIETTEDRELFRKKMLELKVGVCKGRTAKSFLEGKEIAQETGFP 170

Query: 128 YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDAS 186
            VI+P       G   +   +     L      +   ++L+EQ + G  E    ++ D +
Sbjct: 171 LVIRPSYTLGGTGGGFVNTPEEFDAALNHGLHASPVHEVLVEQSIMGWKEYELELLRDHN 230

Query: 187 LDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIG-CRGI 243
            ++  I   ++    ++       +S  V PA  +P  IY++++ +A      IG   G 
Sbjct: 231 GNIVIICTIEN----FDPMGVHTGDSITVAPAMTLPDTIYQKMRDMAIRMMNGIGQFAGG 286

Query: 244 SRSDFLFDPLSRKVFWLEINV 264
               F  +P +  +  +EIN 
Sbjct: 287 CNVQFALNPETDDIIAIEINP 307


>gi|293571004|ref|ZP_06682047.1| acetyl-CoA carboxylase, biotin carboxylase [Enterococcus faecium
           E980]
 gi|291608930|gb|EFF38209.1| acetyl-CoA carboxylase, biotin carboxylase [Enterococcus faecium
           E980]
          Length = 459

 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 75/220 (34%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  FG   E+    ++ E   I +            +K+ ++Q++    VPV P    
Sbjct: 77  AIHPGFGFLSENSRFASMCEECNITFIGPKSATIDAMGNKINARQLMQEANVPVIPGSTG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGD 164
            +      ++    I  P ++K   GG   GI  ++  + +P          ++++ + D
Sbjct: 137 VLSTVEEALEIADRIGYPVMLKAAAGGGGKGIRKVQSKEELPQHFSSAQQEAAAAFGNDD 196

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             L +       +   ++GD   +V  +            K             I     
Sbjct: 197 MYLEKIIYPARHIEVQILGDHFGNVIHLGERDCSLQRNNQKVL----EESPSVVISQSKR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +   A  A +A+        +FL D      +++E+N 
Sbjct: 253 EALGDAAVRAAKAVNYENAGTIEFLMDE-EGDFYFMEMNT 291


>gi|121604677|ref|YP_982006.1| carbamoyl-phosphate synthase large subunit [Polaromonas
           naphthalenivorans CJ2]
 gi|120593646|gb|ABM37085.1| carbamoyl-phosphate synthase large subunit [Polaromonas
           naphthalenivorans CJ2]
          Length = 1080

 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 27/198 (13%), Positives = 76/198 (38%), Gaps = 7/198 (3%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF--TMDSQHLISPPYV 129
           LE   +P   +       + D+ R ++++ +  +   P+         ++    +  P V
Sbjct: 651 LEANGVPIIGTSPDMIDAAEDRERFQKLLHALELRQPPNATARTEPEALEKAAALGYPLV 710

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++ + + +   + ++   +H   +L+++++ D IE     + DA   
Sbjct: 711 VRPSYVLGGRAMEIVHEQRDLERYMREAVKVSHDSPVLLDRFLNDAIECDVDCIRDAEGK 770

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                V +    +    +S  ++  + P  +      E++R      +A+   G+    F
Sbjct: 771 TFIGGVMEHIEQAGV--HSGDSACSLPPYSLSAATVTEIKRQTAAMAEALNVVGLMNVQF 828

Query: 249 LFDPLSR--KVFWLEINV 264
               +     ++ LE+N 
Sbjct: 829 AIQNIDGLDVIYVLEVNP 846



 Score = 64.8 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 50/278 (17%), Positives = 101/278 (36%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  I              DV        ++V  ++A  +PD    
Sbjct: 29  SGVQACKALREEGYKVILINSNPATIMTDPATADVTYIEPITWQTVEKIIAKERPDAILP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      +LE   +    +   A   + D+++ K  ++  G+    S +
Sbjct: 89  TMGGQTALNCALDLWRHGVLEKYSVELIGAKPEAIDKAEDRLKFKDAMTKIGLGSARSGI 148

Query: 113 VNRFTMDS--QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +        Q  +  P VI+P       G  +    +       +    +   +LLIE+
Sbjct: 149 AHTMDEAWSVQKTLGFPTVIRPSFTLGGTGGGIAYNPEEFEEICKRGLEASPTSELLIEE 208

Query: 171 YVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + + +   ++   D           +S  V PA+ +    Y+ +
Sbjct: 209 SLLGWKEYEMEVVRDTADNCIIVCSIENLDPMGVHT----GDSITVAPAQTLSDKEYQIL 264

Query: 228 QRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P+  ++  +E+N 
Sbjct: 265 RNASLAVLREIGVDTGGSNVQFSINPVDGRMVVIEMNP 302


>gi|110590387|pdb|2GPS|A Chain A, Crystal Structure Of The Biotin Carboxylase Subunit, E23r
           Mutant, Of Acetyl-Coa Carboxylase From Escherichia Coli.
 gi|110590388|pdb|2GPS|B Chain B, Crystal Structure Of The Biotin Carboxylase Subunit, E23r
           Mutant, Of Acetyl-Coa Carboxylase From Escherichia Coli
          Length = 469

 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 80/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         L  DK+ +   +   GVP  P    
Sbjct: 97  AIHPGYGFLSENANFAEQVERSGFIFIGPKAETIRLMGDKVSAIAAMKKAGVPCVPGSDG 156

Query: 112 -LVNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
            L +    +      I  P +IK   GG   G+ V++ D  +   +     ++ +    D
Sbjct: 157 PLGDDMDKNRAIAKRIGYPVIIKASGGGGGRGMRVVRGDAELAQSISMTRAEAKAAFSND 216

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+Y++    +   V+ D   +   +A           K          PA  I  +
Sbjct: 217 MVYMEKYLENPRHVEIQVLADGQGNAIYLAERDCSMQRRHQK-----VVEEAPAPGITPE 271

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + + +      A   IG RG    +FLF   + + +++E+N 
Sbjct: 272 LRRYIGERCAKACVDIGYRGAGTFEFLF--ENGEFYFIEMNT 311


>gi|134293847|ref|YP_001117583.1| argininosuccinate lyase [Burkholderia vietnamiensis G4]
 gi|134137004|gb|ABO58118.1| Argininosuccinate lyase [Burkholderia vietnamiensis G4]
          Length = 860

 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 89/223 (39%), Gaps = 31/223 (13%)

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLK 134
           L +P   +   A AL  DK+R +  +    VP   +  +   + D+   ++ P ++KP +
Sbjct: 91  LGLP--GTPAEAVALCRDKLRLQDTLRDHSVPYPYTTAIE--SADAARKLTYPVIVKPRQ 146

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVT 190
           G  S+G+ +++++Q  P           G   + ++++ G E +     DA     L VT
Sbjct: 147 GTGSIGVRLVEREQDFPD--------TSGGAFICQRFIPGAEFSVESFSDADGHHVLAVT 198

Query: 191 EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG-CRGISRSDFL 249
              + K   +        L   HVLPA +       +      A  A+G   G + ++  
Sbjct: 199 RKFLTKPPHF--------LELAHVLPADLDAMTQARIVDTVRRALDAVGYAFGPAHTELK 250

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYA-GYSFRELLLW 291
                  +  +EIN +       + P +   A G+S  +L + 
Sbjct: 251 VH--GDTIAIIEINAR---LAGGMIPRLMERAYGWSIADLYVR 288


>gi|325914335|ref|ZP_08176682.1| ATP-grasp enzyme, D-alanine-D-alanine ligase [Xanthomonas
           vesicatoria ATCC 35937]
 gi|325539343|gb|EGD10992.1| ATP-grasp enzyme, D-alanine-D-alanine ligase [Xanthomonas
           vesicatoria ATCC 35937]
          Length = 157

 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 2/52 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD 52
           + ++ GG S+E EVSL S +    AL+   F+   I +D+     L+   PD
Sbjct: 81  VGLIFGGKSAEHEVSLQSARNILDALDPQRFEPVLIGIDKQGQWHLSA--PD 130


>gi|313114931|ref|ZP_07800428.1| carbamoyl-phosphate synthase, large subunit [Faecalibacterium cf.
           prausnitzii KLE1255]
 gi|310622753|gb|EFQ06211.1| carbamoyl-phosphate synthase, large subunit [Faecalibacterium cf.
           prausnitzii KLE1255]
          Length = 1083

 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 52/287 (18%), Positives = 97/287 (33%), Gaps = 35/287 (12%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI---------DVD------------RSVGLV 45
           G ++E + S   G     AL+  G +   +         D D              V  +
Sbjct: 21  GQAAEFDYS---GTQACRALKAEGIETVLLNSNPATIMTDPDVADHVYIEPMTLEVVERI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           L   KPD     L G  G +  ++      L+   I            + D+   K+ + 
Sbjct: 78  LDIEKPDSVLPNLGGQMGLNLSMELARSGYLDRTGIRLLACKPETIDRAEDRELFKETME 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
               P+ PS +V   +  +     I  P +++P       G  + +    +         
Sbjct: 138 KLHQPIIPSEVVETLQDALACADRIGYPVIVRPAFTMGGTGGGICENKAKLIEIGTNGLR 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   Q+L+E+ + G  E+   VM D   +V  I V   +     +   + +S  V P++
Sbjct: 198 LSPIHQILVEKCIAGWKEIEYEVMRDHKGNV--ITVCNMENLD-PVGIHTGDSVVVAPSQ 254

Query: 219 -IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +    Y+ ++  A      +G  G     F   P S     +E+N 
Sbjct: 255 TLTDHEYQMLRTAALDIITELGIEGGCNCQFALKPDSYDYAVIEVNP 301



 Score = 61.3 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 35/224 (15%), Positives = 82/224 (36%), Gaps = 20/224 (8%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQHLISPPYV 129
           ++ + +P   +   A   + D+ R  +++  C +P  P   V      + +   I  P +
Sbjct: 656 MDEIGLPILGTPADAIDEAEDRERFDELLERCRIPRAPGRTVFNLDEALAAADEIGLPVL 715

Query: 130 IKPLK-GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS-- 186
           ++P    G    I+   K   I    + +   +    +L+++Y+ G E     + D    
Sbjct: 716 MRPSYVLGGQNMIVAYTKADVIEYMGVITEHVDMDHPVLLDKYILGTECEVDAICDGENF 775

Query: 187 -LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGIS 244
            +      V ++  +S        +S  V PA+ +       +        + +   G+ 
Sbjct: 776 LIPGIMEQVERTGVHS-------GDSICVYPAQHLTQAEIDTMVDYTGRFARELHVNGL- 827

Query: 245 RSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
             +  +   + KV+ +E+N +   T     P ++   G    +L
Sbjct: 828 -VNVQYAVSNGKVYVIEVNPRSSRT----VPYISKVTGVPMVDL 866


>gi|257898967|ref|ZP_05678620.1| acetyl-CoA carboxylase [Enterococcus faecium Com15]
 gi|257836879|gb|EEV61953.1| acetyl-CoA carboxylase [Enterococcus faecium Com15]
          Length = 459

 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 75/220 (34%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  FG   E+    ++ E   I +            +K+ ++Q++    VPV P    
Sbjct: 77  AIHPGFGFLSENSRFASMCEECNITFIGPKSATIDAMGNKINARQLMQEANVPVIPGSTG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGD 164
            +      ++    I  P ++K   GG   GI  ++  + +P          ++++ + D
Sbjct: 137 VLSTVEEALEIADRIGYPVMLKAAAGGGGKGIRKVQSKEELPQHFSSAQQEAAAAFGNDD 196

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             L +       +   ++GD   +V  +            K             I     
Sbjct: 197 MYLEKIIYPARHIEVQILGDHFGNVIHLGERDCSLQRNNQKVL----EESPSVVISQSKR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +   A  A +A+        +FL D      +++E+N 
Sbjct: 253 EALGDAAVRAAKAVNYENAGTIEFLMDE-EGDFYFMEMNT 291


>gi|257888596|ref|ZP_05668249.1| acetyl-CoA carboxylase [Enterococcus faecium 1,141,733]
 gi|257824650|gb|EEV51582.1| acetyl-CoA carboxylase [Enterococcus faecium 1,141,733]
          Length = 459

 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 75/220 (34%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  FG   E+    ++ E   I +            +K+ ++Q++    VPV P    
Sbjct: 77  AIHPGFGFLSENSRFASMCEECNITFIGPKSATIDAMGNKINARQLMQEANVPVIPGSTG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGD 164
            +      ++    I  P ++K   GG   GI  ++  + +P          ++++ + D
Sbjct: 137 VLSTVEEALEIADRIGYPVMLKAAAGGGGKGIRKVQSKEELPQHFSSAQQEAAAAFGNDD 196

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             L +       +   ++GD   +V  +            K             I     
Sbjct: 197 MYLEKIIYPARHIEVQILGDHFGNVIHLGERDCSLQRNNQKVL----EESPSVVISQSKR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +   A  A +A+        +FL D      +++E+N 
Sbjct: 253 EALGDAAVRAAKAVNYENAGTIEFLMDE-EGDFYFMEMNT 291


>gi|197287363|ref|YP_002153235.1| bifunctional acetyl-/propionyl-coenzyme A carboxylase subunit alpha
           [Proteus mirabilis HI4320]
 gi|194684850|emb|CAR46977.1| putative bifunctional acetyl-/propionyl-coenzyme A carboxylase
           alpha chain [includes: biotin carboxylase and biotin
           carboxyl carrier protein] [Proteus mirabilis HI4320]
          Length = 581

 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 30/220 (13%), Positives = 71/220 (32%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP----VCP 109
           ++H  +G   E       ++   + +         +  DK++++++  S G P       
Sbjct: 86  MIHPGYGFLSERADFAKAVQQAGLLWIGPDPQTIEVLGDKVQARKIAQSVGAPLVNGTAD 145

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL----DLLQSSSWNHGDQ 165
            +   +  +D       P  IK   GG   G+ +      I       + ++ +     +
Sbjct: 146 PVSDAKEVLDFAKQYGLPIAIKAAFGGGGRGLKIAHHMAEIEELYHSAVREAVTAFGRGE 205

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             +EQ++D    +   ++ D    V  +            K             +  +  
Sbjct: 206 CYVEQFLDKPRHIEAQIIADKLGHVVVVGTRDCSLQRRNQKLI----EEAPAPYLTDEQR 261

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + + + A       G  G    +FL    +  + +LE+N 
Sbjct: 262 QRIHQSAKDICAKAGYIGAGTVEFLLSA-NGTISFLEVNT 300


>gi|115449579|ref|XP_001218643.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
 gi|114187592|gb|EAU29292.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
          Length = 1188

 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 35/222 (15%), Positives = 81/222 (36%), Gaps = 20/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPSI 111
            +H  +G   E+      +    + +      A +   DK  SK  +      VP+ P  
Sbjct: 510 AIHPGYGYLSENAEFADRVREAGLIFIGPSARAMSTLGDKRSSKDYLREHAPDVPLVPGF 569

Query: 112 LVNRFTMDSQHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD--- 164
             +    +S       I  P ++K   GG   G+ ++++   +  +L ++ S        
Sbjct: 570 AGSTQDAESLASAAAEIGFPVMLKASAGGGGKGMRIVREAGQLKEELERAKSEAQRSFGS 629

Query: 165 -QLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPL 221
             L++E+Y++    +   ++GD     +   V         ++          P   +  
Sbjct: 630 SDLILEKYLESSKHVEIQIVGD-----SHGEVLSFGDRDCSVQRRHQKVIEETPCTFLAE 684

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            + +++   A    + IG       +F+ D  + + ++LE+N
Sbjct: 685 QVRQKMAATAVRIAKLIGYENAGTVEFIVDVQTGRFYFLEVN 726


>gi|94676519|ref|YP_588530.1| acetyl-CoA carboxylase biotin carboxylase subunit [Baumannia
           cicadellinicola str. Hc (Homalodisca coagulata)]
 gi|94219669|gb|ABF13828.1| acetyl-CoA carboxylase, biotin carboxylase [Baumannia
           cicadellinicola str. Hc (Homalodisca coagulata)]
          Length = 449

 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 81/221 (36%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+      +E     +         L  DK+ + + +   G+P  P    
Sbjct: 77  AIHPGYGFLSENADFAEQVERSGFIFIGPKAETIRLMGDKVSAIKTMKKNGIPCIPGSDG 136

Query: 111 -ILVNRFTMDS-QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
            +  +     +   LI  P +IK   GG   G+ ++  DQ +   +     ++ +    D
Sbjct: 137 PVSEDMHKNHAIAKLIGYPVIIKASGGGGGRGMRIVCNDQDLESSIRITRAEAKAVFSND 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            + +E+Y++    +   ++ D   +V  +A           K             I  ++
Sbjct: 197 IVYMEKYLENPRHIEIQILADNQGNVIYLADRDCSMQRRHQKVL----EEAPAPGITDEL 252

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +      A   IG RG    +FL++    + F++E+N 
Sbjct: 253 RRYIGERCAKACIEIGYRGAGTFEFLYEK--GEFFFIEMNT 291


>gi|330963964|gb|EGH64224.1| carbamoyl phosphate synthase large subunit [Pseudomonas syringae
           pv. actinidiae str. M302091]
          Length = 1073

 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 29/196 (14%), Positives = 75/196 (38%), Gaps = 8/196 (4%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYV 129
           LE   +P   +   A   + D+ R +Q+V    +   P+  V        +   I  P V
Sbjct: 653 LEAAGVPIIGTSPDAIDRAEDRERFQQMVERLNLRQPPNATVRSEDEAIRAAARIGYPLV 712

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLD 188
           ++P        + ++ ++  +   L ++   ++   +L++ +++  IE+    + D +  
Sbjct: 713 VRPSYVLGGRAMEIVYQEDELKRYLREAVQVSNDSPVLLDHFLNCAIEMDVDAVCDGTDV 772

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           V    +   +       +S  ++  + P  +P  I  E++         +G  G+   + 
Sbjct: 773 VIGAIMQHIEQAGV---HSGDSACSLPPYSLPAHIQDEMREQVKKMALELGVVGL--MNV 827

Query: 249 LFDPLSRKVFWLEINV 264
                   ++ +E+N 
Sbjct: 828 QLALQGEDIYVIEVNP 843



 Score = 63.2 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 96/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +              D         ++V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPAMADATYIEPIKWQTVAKIIEKERPDALLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +    + +LE   +    +       + D+ R  + + S G+    S +
Sbjct: 89  TMGGQTALNCALDLEREGVLEKFGVEMIGANADTIDKAEDRSRFDKAMKSIGLACPRSGI 148

Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     +     +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHSMEEANAVLEKLGFPCIIRPSFTMGGTGGGIAYNREEFEEICARGLDLSPTKELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D   + +   ++   D           +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKKDNCIIVCSIENFDPMGVHT----GDSITVAPAQTLTDKEYQIL 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F   P + ++  +E+N 
Sbjct: 265 RNASLAVLREIGVETGGSNVQFGICPDTGRMVVIEMNP 302


>gi|323173485|gb|EFZ59114.1| acetyl-CoA carboxylase, biotin carboxylase [Escherichia coli LT-68]
          Length = 449

 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 81/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         L  DK+ +   +   GVP  P    
Sbjct: 77  AIHPGYGFLSENANFAEQVERSGFIFIGPKAETIRLMGDKVSAIAAMKKAGVPCVPGSDG 136

Query: 112 -LVNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
            L +    +      I  P +IK   GG   G+ V++ D  +   +     ++ +  + D
Sbjct: 137 PLGDDMDKNRAIAKRIGYPVIIKASGGGGGRGMRVVRGDAELAQSISMTRAEAKAAFNND 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+Y++    +   V+ D   +   +A           K          PA  I  +
Sbjct: 197 MVYMEKYLENPRHVEIQVLADGQGNAIYLAERDCSMQRRHQK-----VVEEAPAPGITPE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + + +      A   IG RG    +FLF   + + +++E+N 
Sbjct: 252 LRRYIGERCAKACVDIGYRGAGTFEFLF--ENGEFYFIEMNT 291


>gi|302519430|ref|ZP_07271772.1| acetyl-CoA carboxylase, biotin carboxylase [Streptomyces sp. SPB78]
 gi|302428325|gb|EFL00141.1| acetyl-CoA carboxylase, biotin carboxylase [Streptomyces sp. SPB78]
          Length = 589

 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 36/241 (14%), Positives = 78/241 (32%), Gaps = 18/241 (7%)

Query: 34  SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLV-QAILELLEIPYTHSGILASALSMD 92
           S +D+ + +    A    D  +   +G   E+    QA+L+   + +      A     D
Sbjct: 58  SYLDIAKVLHAA-AESGADAVYPA-YGFLSENAEFAQAVLD-AGLTWIGPPPAAIRDLGD 114

Query: 93  KMRSKQVVSSCGVP----VCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQ 148
           K+ ++ +    G P        +      +        P  IK   GG   G+ V +  +
Sbjct: 115 KVAARHIAQRAGAPLVAGTPDPVSGAEEVVAFAREHGLPIAIKAAFGGGGRGLKVARTLE 174

Query: 149 SIPL----DLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYE 203
            +P      + ++ +     +  +E+Y+D    +    + D   +V  ++          
Sbjct: 175 EVPELYDSAVREAVAAFGRGECFVERYLDRPRHVETQCLADQHGNVVVVSTRDCSLQRRH 234

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            K             +      E+   +    +  G  G    +FL       + +LE+N
Sbjct: 235 QK----LVEEAPAPFLSEAQVAELYSASKAILKEAGYVGAGTVEFLV-GNDGTISFLEVN 289

Query: 264 V 264
            
Sbjct: 290 T 290


>gi|240281214|gb|EER44717.1| pyruvate carboxylase pyc [Ajellomyces capsulatus H143]
          Length = 1128

 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 91/222 (40%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
           ++H  +G   E+      +E   + +            DK+ ++++   CGVPV P    
Sbjct: 124 LIHPGYGFLSENAEFARNVEKAGLVFVGPTPDTIDTLGDKVSARRLAIKCGVPVVPGTPG 183

Query: 113 -VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS-----SSWNHGD 164
            V RF            P +IK   GG   G+ V+++ +++     ++     S++    
Sbjct: 184 PVERFEEVKAFTDQYGFPIIIKAAFGGGGRGMRVVREQETLQDAFERATSEAKSAFG-NG 242

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLD 222
            + +E+++D    +   ++GD   ++  +           ++        V PA  +P+D
Sbjct: 243 TVFVERFLDKPKHIEVQLLGDNHGNIVHLYE-----RDCSVQRRHQKVVEVAPAKDLPVD 297

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +   +   A    +++  R    ++FL D  +R  +++EIN 
Sbjct: 298 VRDTILADAVKLAKSVNYRNAGTAEFLVDQQNR-YYFIEINP 338


>gi|308235313|ref|ZP_07666050.1| carbamoyl-phosphate synthase L chain, ATP binding domain protein
           [Gardnerella vaginalis ATCC 14018]
 gi|311115114|ref|YP_003986335.1| biotin carboxylase [Gardnerella vaginalis ATCC 14019]
 gi|310946608|gb|ADP39312.1| biotin carboxylase [Gardnerella vaginalis ATCC 14019]
          Length = 615

 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 36/198 (18%), Positives = 73/198 (36%), Gaps = 14/198 (7%)

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN----RFTMDSQHLISPPYVI 130
               +      A     DK+ +++V +   VP  P I       R  +        P ++
Sbjct: 101 AGAVWIGPKPEALIDLGDKITARRVATRAKVPPVPGISEPVKDIRELLTFAQTHGYPVMM 160

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG--DQLLIEQYVD-GIELTCGVMGDASL 187
           K   GG   GI V+  D  +    +   +   G  D+  IE+++D    +   V  D+  
Sbjct: 161 KRTDGGGGRGITVVHNDDELRGFYMNHDALQGGDLDEYFIERFIDKARHVETQVGRDSHG 220

Query: 188 DVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRS 246
           + T  +          ++  +       PA  +  D   ++ R +    +A+   G+   
Sbjct: 221 NFTIYST-----RDCSVQRRNQKLVEEAPAPFLTDDENAQLHRYSRNLFEAVDYVGLGTC 275

Query: 247 DFLFDPLSRKVFWLEINV 264
           +++      KV++LE+N 
Sbjct: 276 EYMVTSQ-HKVYFLEVNP 292


>gi|254449296|ref|ZP_05062742.1| acetyl-CoA carboxylase, biotin carboxylase [gamma proteobacterium
           HTCC5015]
 gi|198261105|gb|EDY85404.1| acetyl-CoA carboxylase, biotin carboxylase [gamma proteobacterium
           HTCC5015]
          Length = 451

 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 79/222 (35%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         L  DK+ +K+ +   GVP  P    
Sbjct: 80  AIHPGYGFLSENADFAEQVERSGFTFIGPPASVIRLMGDKISAKKAMQKAGVPCVPGSEG 139

Query: 112 LVNRFTMDSQHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GD 164
            + + +  +  L   I  P +IK   GG   G+ V+  + S+   +  + +         
Sbjct: 140 ALGKDSTQNHALARDIGYPVIIKAAAGGGGRGMRVVHSEASLNSAIATTRAEAEAAFGSG 199

Query: 165 QLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
           +L +E+++     +   V+ D   +   +            K          PA  I   
Sbjct: 200 ELYMEKFLGHPRHIEIQVLADQHGNAVHLGERDCSMQRRHQK-----VIEEAPAPGITEQ 254

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              ++ +    A Q IG  G    +FLF     + +++E+N 
Sbjct: 255 QRHDIGQRCVEACQRIGYVGAGTFEFLF--QDGEFYFIEMNT 294


>gi|156744206|ref|YP_001434335.1| acetyl-CoA carboxylase, biotin carboxylase [Roseiflexus
           castenholzii DSM 13941]
 gi|156235534|gb|ABU60317.1| acetyl-CoA carboxylase, biotin carboxylase [Roseiflexus
           castenholzii DSM 13941]
          Length = 591

 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 75/220 (34%), Gaps = 18/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      + L  + +             K+ +++   + GVPV P  L 
Sbjct: 77  AVHPGYGFLAENPSFARAVTLAGLVFIGPPAEVMERMGGKVAARREAKAAGVPVVPGTLY 136

Query: 114 NRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
              T++      H    P  IK + GG   G  V+ ++  +      +            
Sbjct: 137 PIGTLEELRACAHEYGYPIAIKAVAGGGGRGFRVVFEEGELRQAFESARREAELGFGNAD 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+Y+ D   +   V+ DA  +V  +   +        K             +  ++ 
Sbjct: 197 VYVEKYLTDPRHIEIQVLADAHGNVIHLGERECSVQRRHQK----LIEESPSPVMTPELR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K +   A      +G       +F++     + ++LE+N 
Sbjct: 253 KRMGEAAVRLATQVGYVSAGTLEFIY--QDGEFYFLEMNT 290


>gi|30064587|ref|NP_838758.1| acetyl-CoA carboxylase biotin carboxylase subunit [Shigella
           flexneri 2a str. 2457T]
 gi|30042846|gb|AAP18569.1| acetyl CoA carboxylase, biotin carboxylase subunit [Shigella
           flexneri 2a str. 2457T]
 gi|281602633|gb|ADA75617.1| Acetyl CoA carboxylase, biotin carboxylase subunit [Shigella
           flexneri 2002017]
 gi|313648502|gb|EFS12944.1| acetyl-CoA carboxylase, biotin carboxylase [Shigella flexneri 2a
           str. 2457T]
 gi|332752459|gb|EGJ82848.1| acetyl-CoA carboxylase, biotin carboxylase [Shigella flexneri
           K-671]
 gi|332754393|gb|EGJ84759.1| acetyl-CoA carboxylase, biotin carboxylase [Shigella flexneri
           2747-71]
 gi|332765255|gb|EGJ95482.1| acetyl-CoA carboxylase, biotin carboxylase [Shigella flexneri
           2930-71]
 gi|333014570|gb|EGK33917.1| acetyl-CoA carboxylase, biotin carboxylase [Shigella flexneri
           K-304]
          Length = 449

 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 80/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         L  DK+ +   +   GVP  P    
Sbjct: 77  AIHPGYGFLSENANFAEQVERSGFIFIGPKAETIRLMGDKVSAIAAMKKAGVPCVPGSDG 136

Query: 112 -LVNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
            L +    +      I  P +IK   GG   G+ V++ D  +   +     ++ +    D
Sbjct: 137 PLGDDMDKNRAIAKRIGYPVIIKASGGGGGRGMRVVRGDAELAQSISMTRAEAKAAFSND 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+Y++    +   V+ D   +   +A           K          PA  I  +
Sbjct: 197 MVYMEKYLENPRHVEIQVLADGQGNAIYLAERDCSMQRRHQK-----VVEEAPAPGITPE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + + +      A   IG RG    +FLF   + + +++E+N 
Sbjct: 252 LRRYIGERCAKACVDIGYRGAGTFEFLF--ENGEFYFIEMNT 291


>gi|33863094|ref|NP_894654.1| carbamoyl phosphate synthase large subunit [Prochlorococcus marinus
           str. MIT 9313]
 gi|33635011|emb|CAE20997.1| carbamoyl-phosphate synthase, large subunit [Prochlorococcus
           marinus str. MIT 9313]
          Length = 1102

 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 58/283 (20%), Positives = 97/283 (34%), Gaps = 44/283 (15%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL D GF+V  +         D +              V  V+   +PD    
Sbjct: 29  SGTQACKALRDEGFEVVLVNSNPASIMTDPEMADRTYIEPLTPEVVTRVIELERPDALLP 88

Query: 57  VLHGN--------FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
            + G           E+      LE   +    + + A   + D+   KQ +   GV VC
Sbjct: 89  TMGGQTALNLAVELAENHT----LERFGVELIGADLAAIRKAEDRQLFKQAMERIGVNVC 144

Query: 109 PSIL---VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
           PS +   +       + + S P +I+P       G  +    +            +   Q
Sbjct: 145 PSGIASSLKEAEEVGEVINSFPRIIRPAFTLGGSGGGIAYNPEEFAAICKSGLDASPVSQ 204

Query: 166 LLIEQYVDG-IELTCGVMGD-ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
           +LIE+ + G  E    VM D A   V   ++   D           +S  V PA+ +   
Sbjct: 205 ILIEKSLLGWKEFELEVMRDLADNVVIVCSIENLDAMGVHT----GDSITVAPAQTLTDR 260

Query: 223 IYKEVQRLAFLAHQAIG-CRGISRSDFLFDPLSRKVFWLEINV 264
            Y+ ++  +    + IG   G S   F  +P   +V  +E+N 
Sbjct: 261 EYQRLRDQSIAIIREIGVATGGSNIQFAINPDDGEVVVIEMNP 303



 Score = 49.0 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/219 (13%), Positives = 77/219 (35%), Gaps = 14/219 (6%)

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSS 138
            +   +   + D+ + + ++    +    + L    +        I  P V++P      
Sbjct: 687 GTSPESIDRAEDREQFEAILRQLQIRQPRNGLARSEKDARAVALRIGYPVVVRPSYVLGG 746

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKS 197
             + V+  +Q +   + ++        +LI+QY++  +E+    + D+   V    + + 
Sbjct: 747 RAMEVVFDEQELNRYMAEAVQVEPDHPVLIDQYLENAVEVDVDALCDSDGVVVIGGLME- 805

Query: 198 DFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF---DPL 253
             +       S +S   LP   +     + ++  +     A+  +G+    F     +  
Sbjct: 806 --HIEPAGIHSGDSACCLPSISLGEQALRTIRLWSEALALALKVQGLINLQFAVQRDEAG 863

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
             +VF +E N +   T     P +A   G     +   +
Sbjct: 864 DEQVFIIEANPRASRT----VPFVAKATGVPLARIATRL 898


>gi|318056916|ref|ZP_07975639.1| ATP-binding biosynthetic protein [Streptomyces sp. SA3_actG]
 gi|318075556|ref|ZP_07982888.1| ATP-binding biosynthetic protein [Streptomyces sp. SA3_actF]
          Length = 419

 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 42/195 (21%), Positives = 78/195 (40%), Gaps = 24/195 (12%)

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL--ISPPYVIKPLKGGSS 138
            + + A     DK  +++++   GVP   S+ V      +Q    I  P V+KP    +S
Sbjct: 103 GNSVEAVLACRDKGTTRRLLDEAGVPSARSVRVQSAHEAAQAAAAIGYPVVLKPASHAAS 162

Query: 139 LGIIVIKKDQSIPLD--LLQSSSWNHGDQ---LLIEQYVDGIELTCGVM----GDASLDV 189
           +G+I     +++        + +   G +   +L+E+Y+DG E++   M       +L V
Sbjct: 163 IGVIKAAHPEALRAAWEFANAGAGEQGPEGYGVLVEEYLDGPEVSVECMTLAGESVALAV 222

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR-GISRSDF 248
           T   V  + F+         ++       +PL     V  +A  A  A+G   GIS  + 
Sbjct: 223 TRKEVAFAPFFE-----EVGHTVERDDPLLPL-----VAPVARQALAALGVTDGISHVEM 272

Query: 249 LFDPLSRKVFWLEIN 263
                      +E+N
Sbjct: 273 RVTK--NGPRIIEVN 285


>gi|264676746|ref|YP_003276652.1| cyanophycin synthetase [Comamonas testosteroni CNB-2]
 gi|262207258|gb|ACY31356.1| cyanophycin synthetase [Comamonas testosteroni CNB-2]
          Length = 748

 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 25/105 (23%), Positives = 51/105 (48%), Gaps = 5/105 (4%)

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILV--NRFTMDSQHLISPPYVIKPLKGGSSLGIIV-IK 145
           ++ DK  +K+++++CGVPV    +V       +    I  P  +KP  G  + G+ + + 
Sbjct: 239 IAQDKDFTKRLLAACGVPVPEGQIVASPEEAWEVAQDIGFPVTVKPSDGNHARGVTLELS 298

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190
           K+  I      +     G  +++E+++DG+E    V+G   +  T
Sbjct: 299 KEADIKAAFALAQP--EGSDVIVEKFIDGVEHRLLVVGGKVVAAT 341


>gi|262037944|ref|ZP_06011364.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Leptotrichia
           goodfellowii F0264]
 gi|261748022|gb|EEY35441.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Leptotrichia
           goodfellowii F0264]
          Length = 451

 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 73/220 (33%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     I     I +         +  DK  +++      VP+      
Sbjct: 77  AIHPGYGFLAENASFAKICAQNNIVFIGPKPELINMMGDKATARETAIKNKVPITKGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGDQ 165
            +            I+ P +IK   GG   G+ +   ++ +         ++ +      
Sbjct: 137 IVPDLDEAKKVAEWITYPVMIKATAGGGGKGMRIAHDEKELSENFIAAQNEAKAAFGNPD 196

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+YV+    +   V+GD   +V  +            K           A I     
Sbjct: 197 VYIEKYVEEPRHVEIQVIGDKFGNVVHLGERDCSIQRRHQK----LIEEAPSAGIDAKTR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +++ + A    + IG   +   +FL D      +++E+N 
Sbjct: 253 EKMGKFAAKLAKGIGYDSVGTLEFLVDKNMN-FYFMEMNT 291


>gi|260846061|ref|YP_003223839.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli O103:H2 str. 12009]
 gi|257761208|dbj|BAI32705.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli O103:H2 str. 12009]
          Length = 449

 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 81/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         L  DK+ +   +   GVP  P    
Sbjct: 77  AIHPGYGFLSENANFAEQVERSGFIFIGPKADTIRLMGDKVSAIAAMKKAGVPCVPGSDG 136

Query: 112 -LVNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
            L +    +      I  P +IK   GG   G+ V++ D  +   +     ++ +  + D
Sbjct: 137 PLGDDMDKNRAIAKRIGYPVIIKASGGGGGRGMRVVRGDAELAQSISMTRAEAKAAFNND 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+Y++    +   V+ D   +   +A           K          PA  I  +
Sbjct: 197 MVYMEKYLENPRHVEIQVLADGQGNAIYLAERDCSMQRRHQK-----VVEEAPAPGITPE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + + +      A   IG RG    +FLF   + + +++E+N 
Sbjct: 252 LRRYIGERCAKACVDIGYRGAGTFEFLF--ENGEFYFIEMNT 291


>gi|295672642|ref|XP_002796867.1| pyruvate carboxylase [Paracoccidioides brasiliensis Pb01]
 gi|226282239|gb|EEH37805.1| pyruvate carboxylase [Paracoccidioides brasiliensis Pb01]
          Length = 1196

 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 88/221 (39%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
           ++H  +G   E+      +E   + +            DK+ ++++   CGVPV P    
Sbjct: 122 LVHPGYGFLSENAEFARNVEKAGLVFVGPTPETIDALGDKVSARRLAVKCGVPVVPGTPG 181

Query: 112 LVNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGDQ 165
            V RF            P +IK   GG   G+ V++  +S+         ++ +      
Sbjct: 182 PVGRFEEVKAFTDEYGFPIIIKAAFGGGGRGMRVVRDQESLRDSFERATSEAKAAFGNGT 241

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDI 223
           + +E+++D    +   ++GD   ++  +           ++        + PA  +P+++
Sbjct: 242 VFVERFLDKPKHIEVQLLGDNHGNIVHLYE-----RDCSVQRRHQKVVEIAPAKDLPVEV 296

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              +   A    +++  R    ++FL D  +R  +++EIN 
Sbjct: 297 RDSILADAVKLAKSVNYRNAGTAEFLVDQQNR-YYFIEINP 336


>gi|171059374|ref|YP_001791723.1| carbamoyl-phosphate synthase L chain ATP-binding [Leptothrix
           cholodnii SP-6]
 gi|170776819|gb|ACB34958.1| Carbamoyl-phosphate synthase L chain ATP-binding [Leptothrix
           cholodnii SP-6]
          Length = 691

 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 74/220 (33%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+      LE   I +      + A   DK+ SK++     V   P    
Sbjct: 77  AVHPGYGFLSENEAFARRLEEEGITFIGPKHYSIAAMGDKIASKKLALEAKVNTIPGYNN 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
            I      ++    I  P +IK   GG   G+ V   D+          +        D+
Sbjct: 137 AIDTPEQAVEIAKGIGYPVMIKASAGGGGKGLRVAFNDKEAFEGFSSCRNEARNSFGDDR 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+YV +   +   V+GD+  +V  +   +        K             I     
Sbjct: 197 VFIEKYVLEPRHIEIQVLGDSHGNVLYLNERECSIQRRHQK----VIEEAPSPFISDATR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +   A    +A+  +     +F      +  ++LE+N 
Sbjct: 253 RAMGEQAVALAKAVKYQSAGTVEF-VVGKDQDFYFLEMNT 291


>gi|167624819|ref|YP_001675113.1| carbamoyl-phosphate synthase L chain ATP-binding [Shewanella
           halifaxensis HAW-EB4]
 gi|167354841|gb|ABZ77454.1| Carbamoyl-phosphate synthase L chain ATP-binding [Shewanella
           halifaxensis HAW-EB4]
          Length = 702

 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 79/221 (35%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       E   I +      A      K  +K+++ +  VP+ P    
Sbjct: 77  AIHPGYGFLSENADFALKCEQANIAFVGPSAAAIDSMGSKSAAKEIMGAANVPLVPGYHG 136

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
           +    +      + +  P +IK   GG   G+ +++ +  +   +  +          D+
Sbjct: 137 DAQNDELLVSEANKMGFPLLIKAAFGGGGKGMRIVESNNEVLDAIHSARREAISSFGNDK 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           LL+E+Y+     +   V  D+  +   ++           K          PA  +   +
Sbjct: 197 LLMERYLRQPRHVEVQVFADSHGNCIYLSDRDCSIQRRHQK-----VVEEAPAPGLSDAL 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             ++   A  A +AI   G    +FL D      +++E+N 
Sbjct: 252 RVKMGEAAVAAAKAINYEGAGTVEFLLDT-DDSFYFMEMNT 291


>gi|50121603|ref|YP_050770.1| ribosomal protein S6 modification protein [Pectobacterium
           atrosepticum SCRI1043]
 gi|81644742|sp|Q6D3R5|RIMK_ERWCT RecName: Full=Ribosomal protein S6 modification protein
 gi|49612129|emb|CAG75579.1| ribosomal protein S6 modification protein [Pectobacterium
           atrosepticum SCRI1043]
          Length = 303

 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 60/323 (18%), Positives = 114/323 (35%), Gaps = 55/323 (17%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV----------DRSVGLVLAHL- 49
           +A+L       R+ +L S K    A E     V  ID             SV      L 
Sbjct: 3   IAILS------RDGTLYSCKRLREAAESRKHSVEIIDPLSCYMNINSAAPSVHYRGRRLD 56

Query: 50  KPDLAFN------VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103
           K D            +G       V    E+L   Y  +  +A   + DK+ S Q+++  
Sbjct: 57  KFDAVIPRIGSQITFYGT-----AVLRQFEMLG-SYPLNNSVAVIRARDKLHSLQLLARE 110

Query: 104 GV--PVCPSILVNRFTMDSQHLISP-PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160
           G+  P+         T D   ++   P V+K + G   +G+++ +  Q+     +  +  
Sbjct: 111 GIDLPITGFAHSPDDTGDLIAMVGGAPLVVKLVDGTQGIGVVLAETRQAAES--VIDAFR 168

Query: 161 NHGDQLLIEQYV---DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
                +L+++YV    G ++ C V+G+  +   E      +F S   +  S N   +   
Sbjct: 169 GLNAHILVQEYVHEAQGKDIRCFVIGNRVVAAIERQAKAGEFRSNLHRGGSANKVKI--- 225

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
                   + + +A  A + +G       D       R    +E+N  PG+  +      
Sbjct: 226 ------TAQERAIAIKAAKTLGLNVAG-VD--ILRADRGPLVMEVNASPGLEGI------ 270

Query: 278 AAYAGYSFRELLLWMVEDASCLR 300
               G    ++++  +E  +  R
Sbjct: 271 ETTTGLDIADMMIEFIEQKTQRR 293


>gi|326777892|ref|ZP_08237157.1| alpha-L-glutamate ligase, RimK family [Streptomyces cf. griseus
           XylebKG-1]
 gi|326658225|gb|EGE43071.1| alpha-L-glutamate ligase, RimK family [Streptomyces cf. griseus
           XylebKG-1]
          Length = 284

 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 39/207 (18%), Positives = 74/207 (35%), Gaps = 17/207 (8%)

Query: 66  GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTMDSQHL 123
           GL+  + E    P T +   A     +K   + ++ + GVPV    LV   +    +   
Sbjct: 67  GLIATLAEAAGAP-TLNTARAIHACENKAALRALLRTAGVPVPDHRLVLSRKDFDRALAD 125

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIP--LDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
           +  P V+KP+ GG    + +I+   +     D ++  +       ++E Y+ G  + C V
Sbjct: 126 LPLPLVLKPVFGGMGKRVTLIRHADTAHSVYDYVEDLAHAFEQASVVEPYLGGSSVRCLV 185

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241
           +G   +   E     SD+ +     +   +    P         +V ++       +G  
Sbjct: 186 VGRELVGAAEFESGGSDWRNNAALGNKNRALAHDP---------DVVKIVDGVVDVLGPG 236

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGM 268
                D    P        E+N  PG 
Sbjct: 237 IYG-VDLFATPDGH--VVNEVNHAPGF 260


>gi|261855411|ref|YP_003262694.1| urea carboxylase [Halothiobacillus neapolitanus c2]
 gi|261835880|gb|ACX95647.1| urea carboxylase [Halothiobacillus neapolitanus c2]
          Length = 1208

 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 28/195 (14%), Positives = 64/195 (32%), Gaps = 14/195 (7%)

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---FTMDSQHLISPPYVIKPLKG 135
           +             K  ++++     VP+ P   +       +     I  P ++K   G
Sbjct: 102 FIGPTPQQMRDFGLKHTARELAEKNSVPLLPGSGLLDDVAHALREAERIGYPVMLKSTAG 161

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHG----DQLLIEQYVD-GIELTCGVMGDASLDVT 190
           G  +G+ +      +          +        L +E+YV+    +   + GD    V 
Sbjct: 162 GGGIGMKLCWTADQLHEAYDSVERLSRSNFSQGGLFLEKYVEQARHIEVQIFGDGKGQVV 221

Query: 191 EIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
            +           ++  +       PA  +   +  E+   A    QA+  +     +F+
Sbjct: 222 SLGE-----RDCSVQRRNQKVIEETPAPGLDESLRTELWGAATRLGQAVNYQSAGTVEFV 276

Query: 250 FDPLSRKVFWLEINV 264
           +D  +   ++LE+N 
Sbjct: 277 YDVKNAAFYFLEVNT 291


>gi|167564151|ref|ZP_02357067.1| acetyl-CoA carboxylase biotin carboxylase subunit [Burkholderia
           oklahomensis EO147]
 gi|167574654|ref|ZP_02367528.1| acetyl-CoA carboxylase biotin carboxylase subunit [Burkholderia
           oklahomensis C6786]
          Length = 455

 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 34/222 (15%), Positives = 78/222 (35%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         +  DK+ +KQ +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAERVEQSGFTFIGPRPDTIRMMGDKVTAKQTMIRTGVPCVPGSDG 136

Query: 112 ---LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
                 +  +     +  P +IK   GG   G+ V+  + ++   +     ++       
Sbjct: 137 ALPDDPKEIVKIARSVGYPVIIKAAGGGGGRGMRVVHTEAALVNAVNMTREEAGRAFGNP 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
           Q+ +E++++    +   V+ D+  +   +            K          PA  I   
Sbjct: 197 QVYMEKFLENPRHIEIQVLADSHKNAVWLGERDCSMQRRHQK-----VIEEAPAPGIARR 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +   +      A + +G  G    +FL+   + + +++E+N 
Sbjct: 252 LIDRIGDRCADACKKMGYLGAGTFEFLY--ENNEFYFIEMNT 291


>gi|119477418|ref|ZP_01617609.1| methylcrotonyl-CoA carboxylase, alpha subunit [marine gamma
           proteobacterium HTCC2143]
 gi|119449344|gb|EAW30583.1| methylcrotonyl-CoA carboxylase, alpha subunit [marine gamma
           proteobacterium HTCC2143]
          Length = 679

 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 77/221 (34%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       E  ++ +    I A      K  +K ++    VP+ P    
Sbjct: 77  AIHPGYGFLSENAAFCRACEDNKLTFIGPPIAAIEAMGSKSAAKTIMGKANVPLVPGYHG 136

Query: 114 NRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
                +        +  P ++K   GG   G+  +   ++    L+ +   +      D 
Sbjct: 137 TDQNTEILKQHADAMGYPVLLKAAAGGGGKGMRQVWSAEAFDDALIAAKRESINAFNDDI 196

Query: 166 LLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           +LIE+Y +    +   V  D   +   +A           K          PA  +   +
Sbjct: 197 MLIEKYLIAPRHVEIQVFCDNHDNAVYLAERDCSIQRRHQK-----VIEEAPAPGVSASL 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +++   A  A QAI  RG    +FL D      +++E+N 
Sbjct: 252 RQKMGETAIKAAQAIDYRGAGTVEFLLD-SDGSFYFMEMNT 291


>gi|116670809|ref|YP_831742.1| carbamoyl phosphate synthase large subunit [Arthrobacter sp. FB24]
 gi|166989831|sp|A0JX72|CARB_ARTS2 RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|116610918|gb|ABK03642.1| carbamoyl-phosphate synthase large subunit [Arthrobacter sp. FB24]
          Length = 1099

 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 51/288 (17%), Positives = 110/288 (38%), Gaps = 36/288 (12%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI---------DVD------------RSVGLV 45
           G ++E + S   G      L++ G +V  +         D +              V  +
Sbjct: 21  GQAAEFDYS---GTQALRVLKEEGLRVILVNSNPATIMTDPEFADATYVEPITPEVVEKI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +A  +PD     L G    +  +      +LE   +    + I A  L  D+ + K VV 
Sbjct: 78  IAKERPDAILPTLGGQTALNTAIALDKNGVLEKYNVELIGANIAAIELGEDREKFKGVVE 137

Query: 102 SCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
            CG     S +++     + +   +  P V++P      LG  +   +  +   + Q   
Sbjct: 138 RCGAESARSHIIHSMDEALKAAEDLGYPMVVRPSFTMGGLGSGLAYTEDDLRRIVGQGLQ 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA- 217
           ++   ++L+E+ + G  E    +M D + +V  +   ++      +   + +S  V PA 
Sbjct: 198 YSPTSEVLLEESILGWKEYELEMMRDKNDNVVVVCSIENFD---PVGVHTGDSITVAPAL 254

Query: 218 KIPLDIYKEVQRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
            +    Y+ ++ ++    + +G   G     F  +P + +V  +E+N 
Sbjct: 255 TLTDREYQRLRDISIAVIREVGVDTGGCNIQFAVEPDTGRVVVIEMNP 302



 Score = 52.8 bits (126), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 32/196 (16%), Positives = 73/196 (37%), Gaps = 8/196 (4%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--QHLISPPYV 129
           L    +P   +   A  L+  +    +V+   G+    +     F         I  P +
Sbjct: 652 LADAGVPILGTSPEAIDLAEHRGAFSRVLDEAGLISPKNGTAVSFEDAKKIADEIGYPVL 711

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           ++P       G+ ++  + ++   +  ++       +LI+++++       +  DA  D 
Sbjct: 712 VRPSYVLGGRGMEIVYDEPNLSRYIANATEITTEHPVLIDRFLE---DAVEIDVDALYDG 768

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           TE+ +     +  E    S +S  V  P  +  ++ + V+       + +G RG+    F
Sbjct: 769 TEMYLGGIMEHIEEAGIHSGDSACVLPPITLGNNVIERVRTATLAIAEGVGVRGLINIQF 828

Query: 249 LFDPLSRKVFWLEINV 264
                S  ++ LE N 
Sbjct: 829 AL--ASDVLYVLEANP 842


>gi|315633349|ref|ZP_07888640.1| phosphoribosylglycinamide formyltransferase 2 [Aggregatibacter
           segnis ATCC 33393]
 gi|315477849|gb|EFU68590.1| phosphoribosylglycinamide formyltransferase 2 [Aggregatibacter
           segnis ATCC 33393]
          Length = 393

 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 55/290 (18%), Positives = 101/290 (34%), Gaps = 55/290 (18%)

Query: 19  GKACASALEDAGFKVSQID--------------------VDRSVGLVLAHLKPDLAFNVL 58
           GK     L+  G +V  +D                       ++  V+   +PD     +
Sbjct: 24  GKEVVIELQRLGVEVIAVDRYENAPAQQVAHRAYTISMLDGAALRAVVEKERPDFIVPEV 83

Query: 59  HGNFGEDGLVQAILELLEIPYTH-SGILASALSMDKMRSKQVV-SSCGVPVCPSILVNRF 116
                E      +LEL +  +T      A+ L+M++   +++     G+P  P   ++ F
Sbjct: 84  -----EAIATDTLLELEQEGFTVIPTAKATKLTMNREGIRRLASEELGLPTSPYEFIDNF 138

Query: 117 TM--DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD--LLQSSSWNHGDQLLIEQYV 172
                +   I  P V+KP+   S  G  VI+    I       Q        ++++E ++
Sbjct: 139 DDFKSAVEKIGVPCVVKPIMSSSGHGQSVIRTLDQIQSAWDYAQEGGRAGAGRVIVEGFI 198

Query: 173 ----DGIELTCGVMGDASL--DVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE 226
               +  +LT   +   S    +  I V       Y   +         P  +     K+
Sbjct: 199 KFDYEITQLTVRHVNGTSFLAPIGHIQVDG----DYRESW--------QPQAMSETALKK 246

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP---GM-TPVS 272
            Q +A     A+G RGI   +         V + E++ +P   GM T +S
Sbjct: 247 AQEIAEKITGALGGRGIFGVEMFVR--GDDVIFNEVSPRPHDTGMVTMIS 294


>gi|310825355|ref|YP_003957713.1| ribosomal protein S6 modification protein [Stigmatella aurantiaca
           DW4/3-1]
 gi|309398427|gb|ADO75886.1| Ribosomal protein S6 modification protein [Stigmatella aurantiaca
           DW4/3-1]
          Length = 339

 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 47/276 (17%), Positives = 101/276 (36%), Gaps = 41/276 (14%)

Query: 15  SLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH-----------LKPDLAFNVLHGNFG 63
           SL S      A+++ G +   +D  R   ++                 D+         G
Sbjct: 47  SLYSTGRLVEAIKERGHRPLVLDTLRCTMILAKDHPRMMYRGVEIRGVDVVIP----RIG 102

Query: 64  EDGLVQAI-----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                  +      E++ +P  +        S DK+R  Q +S  G+ +  +++ +  + 
Sbjct: 103 ASITAYGLAVVTHFEMMGVPVVNEAGSILR-SRDKLRCLQYLSRAGLDIPRTVMAHDRSN 161

Query: 119 DS---QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV--- 172
                + +   P +IK ++G   +G+++    Q +    +  + W+ G +++++++V   
Sbjct: 162 VRRLVEEVGGLPLIIKLIRGTQGVGVMIAHTLQEVQS--IVDTFWDLGQEIVLQEFVAES 219

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G ++   V+G+  +        K +F S   +        + PA +           A 
Sbjct: 220 KGKDVRALVVGNRVVGAMRRQAKKGEFRSNIHRGGEGQPIELSPAYVEA---------AV 270

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268
            A +  G  GI+  D L          +EIN  PG 
Sbjct: 271 TAARITGL-GIAGVDML--EGHAGPRLMEINSSPGF 303


>gi|302858044|ref|XP_002960004.1| hypothetical protein VOLCADRAFT_101515 [Volvox carteri f.
           nagariensis]
 gi|300253596|gb|EFJ38931.1| hypothetical protein VOLCADRAFT_101515 [Volvox carteri f.
           nagariensis]
          Length = 316

 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 24/112 (21%), Positives = 50/112 (44%), Gaps = 5/112 (4%)

Query: 88  ALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--QHLISPPYVIKPLKGGSSLGIIV-I 144
           +++ DK  +K+++ + GVPV     V            +  P V+KP  G    G++V I
Sbjct: 24  SIAQDKDLTKRLLHAAGVPVPLGRPVKDVEEAWLVAQEVGLPVVVKPQDGNQGKGVVVNI 83

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK 196
              + +      +S +  GD +++E+++ G +    V+G   +       P+
Sbjct: 84  TTHEQLKAAFATASEF--GDDIMVERFLPGHDFRLLVVGGQLVAAARREPPQ 133


>gi|299529567|ref|ZP_07043004.1| cyanophycin synthetase [Comamonas testosteroni S44]
 gi|298722430|gb|EFI63350.1| cyanophycin synthetase [Comamonas testosteroni S44]
          Length = 748

 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 25/105 (23%), Positives = 51/105 (48%), Gaps = 5/105 (4%)

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILV--NRFTMDSQHLISPPYVIKPLKGGSSLGIIV-IK 145
           ++ DK  +K+++++CGVPV    +V       +    I  P  +KP  G  + G+ + + 
Sbjct: 239 IAQDKDFTKRLLAACGVPVPEGQIVASPEEAWEVAQDIGFPVTVKPSDGNHARGVTLELS 298

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190
           K+  I      +     G  +++E+++DG+E    V+G   +  T
Sbjct: 299 KEADIKAAFALAQP--EGSDVIVEKFIDGVEHRLLVVGGKVVAAT 341


>gi|121605278|ref|YP_982607.1| acetyl-CoA carboxylase, biotin carboxylase [Polaromonas
           naphthalenivorans CJ2]
 gi|120594247|gb|ABM37686.1| acetyl-CoA carboxylase, biotin carboxylase [Polaromonas
           naphthalenivorans CJ2]
          Length = 682

 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 77/220 (35%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H  +G   E+      +E   I +      + A   DK+ SK++  + GV   P +  
Sbjct: 77  AVHPGYGFLSENSGFAKRVEEEGIVFIGPKHYSIAAMGDKIESKKLAGAAGVNCIPGVND 136

Query: 113 ---VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
                   ++    I  P +IK   GG   G+ V   D+          +        D+
Sbjct: 137 AIETAEKAVEIAKDIGYPVMIKASAGGGGKGLRVAFNDKEAFEGFTSCRNEARNSFGDDR 196

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE++V+    +   ++GD+  +V  +   +        K             I  +  
Sbjct: 197 VFIEKFVEEPRHIEIQLIGDSHGNVIYLNERECSIQRRHQK----VIEEAPSPFISDETR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K +   A    +A+  +     +F      +  ++LE+N 
Sbjct: 253 KAMGEQAVQLAKAVKYQSAGTVEF-VVGKDQSFYFLEMNT 291


>gi|301155528|emb|CBW14996.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Haemophilus
           parainfluenzae T3T1]
          Length = 448

 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 40/225 (17%), Positives = 85/225 (37%), Gaps = 27/225 (12%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+      +E     +         L  DK+ + + +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAEQVECSGFTFIGPTADVIRLMGDKVSAIKAMKKAGVPCVPGSDG 136

Query: 111 -----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWN 161
                I  N+   +    I  P +IK   GG   G+ V++ + ++   +     ++ +  
Sbjct: 137 PVGSDIAKNK---EIAKRIGYPIIIKASGGGGGRGMRVVRSEDALEESIAMTKAEAKAAF 193

Query: 162 HGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-I 219
           + D + +E+Y++    +   V+ D   +   +A           K          PA  I
Sbjct: 194 NNDMVYMEKYLENPRHVEIQVLADTHGNAIYLAERDCSMQRRHQK-----VVEEAPAPGI 248

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             ++ +++      A   IG RG    +FL+   + + +++E+N 
Sbjct: 249 TEEVRRDIGTRCANACIEIGYRGAGTFEFLY--ENGEFYFIEMNT 291


>gi|293372529|ref|ZP_06618911.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Bacteroides
           ovatus SD CMC 3f]
 gi|292632338|gb|EFF50934.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Bacteroides
           ovatus SD CMC 3f]
          Length = 511

 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 84/220 (38%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       E   + +        +    K  +++++   G+P+ P    
Sbjct: 84  AIHPGYGFLSENADFARRCEEEGVIFIGPSADIISKMGIKTEARKIMREAGLPIVPGTET 143

Query: 114 NRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN----HGDQ 165
               +D      + +  P ++K L GG   G+ +++ ++ +   L  S S        D 
Sbjct: 144 PVQGIDEVKKVANEVGYPIMLKALAGGGGKGMRLVRTEEEVETALRLSQSEAGTSFGNDA 203

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+Y++    +   +MGD   +V  +   +        K             +  +  
Sbjct: 204 VYIEKYIENPHHIEVQIMGDKYGNVVHLYERECSIQRRNQK----VIEESPSPFVKEETR 259

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K++ ++A  A + IG       +F+ D   +  ++LE+N 
Sbjct: 260 KKMLKVAVEACKKIGYYSAGTLEFMMDK-DQNFYFLEMNT 298


>gi|257064138|ref|YP_003143810.1| carbamoylphosphate synthase large subunit [Slackia
           heliotrinireducens DSM 20476]
 gi|256791791|gb|ACV22461.1| carbamoylphosphate synthase large subunit [Slackia
           heliotrinireducens DSM 20476]
          Length = 423

 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 45/238 (18%), Positives = 86/238 (36%), Gaps = 7/238 (2%)

Query: 20  KACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPY 79
              A A+ DA F +   D  +++  +    + D           E   +  I +   +P 
Sbjct: 41  NGLAKAIADASFNIDVRD-TQAIAKLCQEQRVDGIIASFSDLLAE--CLVNIADAAGLPC 97

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-DSQHLISPPYVIKPLKGGSS 138
             +     A   DK   K +    G+P   S+ V++ T+ D    I+ P V KP+    S
Sbjct: 98  Y-AKPDRFAYVRDKTLMKGMFDELGIPHAKSVQVHKDTLEDDLSGITFPCVTKPVDSYGS 156

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD 198
            G+ V+   + +     +  ++++   +++E+YV G E+            T I +   +
Sbjct: 157 RGVYVLDTAEEVRECFDEVEAYSNRGYIIVEEYVQGDEINAMTW-VCDGKATVIGLADRE 215

Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR-GISRSDFLFDPLSR 255
                       S  + P+K    +  +V  +A      IG   G     F +D    
Sbjct: 216 KSVELAHAIPHVSRIIQPSKHLRAVQDDVCAMAEKIAAYIGIETGPLSMQFFYDEKRG 273


>gi|221069121|ref|ZP_03545226.1| cyanophycin synthetase [Comamonas testosteroni KF-1]
 gi|220714144|gb|EED69512.1| cyanophycin synthetase [Comamonas testosteroni KF-1]
          Length = 748

 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 25/105 (23%), Positives = 51/105 (48%), Gaps = 5/105 (4%)

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILV--NRFTMDSQHLISPPYVIKPLKGGSSLGIIV-IK 145
           ++ DK  +K+++++CGVPV    +V       +    I  P  +KP  G  + G+ + + 
Sbjct: 239 IAQDKDFTKRLLAACGVPVPEGQIVASPEEAWEVAQDIGFPVTVKPSDGNHARGVTLELS 298

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190
           K+  I      +     G  +++E+++DG+E    V+G   +  T
Sbjct: 299 KEADIKAAFALAQP--EGSDVIVEKFIDGVEHRLLVVGGKVVAAT 341


>gi|193066798|ref|ZP_03047809.1| acetyl-CoA carboxylase, biotin carboxylase [Escherichia coli E22]
 gi|209920728|ref|YP_002294812.1| acetyl-CoA carboxylase biotin carboxylase subunit [Escherichia coli
           SE11]
 gi|218555820|ref|YP_002388733.1| acetyl-CoA carboxylase biotin carboxylase subunit [Escherichia coli
           IAI1]
 gi|218696955|ref|YP_002404622.1| acetyl-CoA carboxylase biotin carboxylase subunit [Escherichia coli
           55989]
 gi|256018830|ref|ZP_05432695.1| acetyl-CoA carboxylase biotin carboxylase subunit [Shigella sp. D9]
 gi|300817489|ref|ZP_07097705.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli MS 107-1]
 gi|300824968|ref|ZP_07105067.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli MS 119-7]
 gi|307314987|ref|ZP_07594575.1| acetyl-CoA carboxylase, biotin carboxylase [Escherichia coli W]
 gi|331670079|ref|ZP_08370924.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli TA271]
 gi|331679329|ref|ZP_08380001.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli H591]
 gi|192925557|gb|EDV80240.1| acetyl-CoA carboxylase, biotin carboxylase [Escherichia coli E22]
 gi|209913987|dbj|BAG79061.1| acetyl-CoA carboxylase biotin carboxylase subunit [Escherichia coli
           SE11]
 gi|218353687|emb|CAU99939.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli 55989]
 gi|218362588|emb|CAR00213.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli IAI1]
 gi|300522534|gb|EFK43603.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli MS 119-7]
 gi|300529787|gb|EFK50849.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli MS 107-1]
 gi|306905570|gb|EFN36102.1| acetyl-CoA carboxylase, biotin carboxylase [Escherichia coli W]
 gi|315062555|gb|ADT76882.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli W]
 gi|323162941|gb|EFZ48776.1| acetyl-CoA carboxylase, biotin carboxylase [Escherichia coli
           E128010]
 gi|323183015|gb|EFZ68414.1| acetyl-CoA carboxylase, biotin carboxylase [Escherichia coli 1357]
 gi|323376858|gb|ADX49126.1| acetyl-CoA carboxylase, biotin carboxylase [Escherichia coli KO11]
 gi|323966434|gb|EGB61868.1| acetyl-CoA carboxylase [Escherichia coli M863]
 gi|323979033|gb|EGB74111.1| acetyl-CoA carboxylase [Escherichia coli TW10509]
 gi|324020769|gb|EGB89988.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli MS 117-3]
 gi|324115140|gb|EGC09104.1| acetyl-CoA carboxylase [Escherichia fergusonii B253]
 gi|324119436|gb|EGC13319.1| acetyl-CoA carboxylase [Escherichia coli E1167]
 gi|325498835|gb|EGC96694.1| acetyl-CoA carboxylase, biotin carboxylase [Escherichia fergusonii
           ECD227]
 gi|327251349|gb|EGE63038.1| acetyl-CoA carboxylase, biotin carboxylase [Escherichia coli
           STEC_7v]
 gi|331062992|gb|EGI34906.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli TA271]
 gi|331073394|gb|EGI44717.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli H591]
          Length = 449

 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 81/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         L  DK+ +   +   GVP  P    
Sbjct: 77  AIHPGYGFLSENANFAEQVERSGFIFIGPKADTIRLMGDKVSAIAAMKKAGVPCVPGSDG 136

Query: 112 -LVNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
            L +    +      I  P +IK   GG   G+ V++ D  +   +     ++ +  + D
Sbjct: 137 PLGDDMDKNRAIAKRIGYPVIIKASGGGGGRGMRVVRGDAELAQSISMTRAEAKAAFNND 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+Y++    +   V+ D   +   +A           K          PA  I  +
Sbjct: 197 MVYMEKYLENPRHVEIQVLADGQGNAIYLAERDCSMQRRHQK-----VVEEAPAPGITPE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + + +      A   IG RG    +FLF   + + +++E+N 
Sbjct: 252 LRRYIGERCAKACVDIGYRGAGTFEFLF--ENGEFYFIEMNT 291


>gi|298252115|ref|ZP_06975918.1| ATP-dependent carboxylate-amine ligase domain protein ATP-grasp
           [Ktedonobacter racemifer DSM 44963]
 gi|297546707|gb|EFH80575.1| ATP-dependent carboxylate-amine ligase domain protein ATP-grasp
           [Ktedonobacter racemifer DSM 44963]
          Length = 427

 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 41/232 (17%), Positives = 81/232 (34%), Gaps = 39/232 (16%)

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTMDSQHLISPPYVIKP 132
           L +P+   G   +A   DK+  ++++S  G P        +     +    +S P V+KP
Sbjct: 104 LGLPHNSPGAAEAAR--DKLLMRRLMSEGGAPCPVFRDFSLQEAPEEIAQRVSYPCVLKP 161

Query: 133 LKGGSSLGIIVIKKDQSIPLD-------LLQSSSWNHGDQLLIEQYVDGIELTC-GVMGD 184
            +   S G+I                  +L           L+E ++ G+E+   G++  
Sbjct: 162 RRLSGSRGVIRANNPAEFLQAFYRLKRIVLSEGYAEEETTFLVEDFIPGVEVALEGILTH 221

Query: 185 ASLDV-TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR-G 242
            +L V T    P      +        + +  P+++  ++ + +      A  A+G R G
Sbjct: 222 GALKVLTLFDKPDPLDGPF-----FEETIYTTPSRLSQEVQQAIAACVSTAASALGLRHG 276

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
              ++   +      + LEI                  AG S   L   ++E
Sbjct: 277 PVHAELRVNESG--PWMLEI------------------AGRSIGGLCSTILE 308


>gi|167751395|ref|ZP_02423522.1| hypothetical protein EUBSIR_02386 [Eubacterium siraeum DSM 15702]
 gi|167655641|gb|EDR99770.1| hypothetical protein EUBSIR_02386 [Eubacterium siraeum DSM 15702]
          Length = 439

 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 46/274 (16%), Positives = 91/274 (33%), Gaps = 47/274 (17%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAG--------------------FKVSQIDVDRS 41
            +++GG   E         A  +AL  +                     F V   D+D  
Sbjct: 16  VLVIGGGGREH--------AIITALAKSKKVDKLYAAPGNGGISKYAECFNVKATDIDGC 67

Query: 42  VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELL---EIPYTHSGILASALSMDKMRSKQ 98
           V L    L+PD  F        +D LV  +++ L             A+ L   K+ SK 
Sbjct: 68  VELA-KKLRPDYVFVA-----PDDPLVMGMVDKLNAEGFKTFGPRANAAILEGSKVFSKA 121

Query: 99  VVSSCGVPVCPSILVNRFTMDSQ---HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL- 154
           ++    +P                     S P VIK        G+I+ K +Q     + 
Sbjct: 122 LMKKYNIPTAAYETFTDADEAIAYIKKQNSFPAVIKCDGLALGKGVIIAKDEQEAENAVR 181

Query: 155 --LQSSSW-NHGDQLLIEQYVDGIELTC-GVMGDASLDVTEIAVPKSDFYSYELKYSSLN 210
             L    +   G ++++E+++ G E+T        ++     ++     Y  +   ++  
Sbjct: 182 SMLLDGKFGKSGSEIVVEEFMTGPEVTVLAFTDGKTVKPMISSMDHKRAYDNDEGLNTGG 241

Query: 211 STHVLPAKI--PLDIYKEVQRLAFLAHQAIGCRG 242
              + P  +  P    + ++++     +A+   G
Sbjct: 242 MGTIAPNPLYTPDKQQECMEKIFLPTIKAMAAEG 275


>gi|332311476|gb|EGJ24571.1| Pyruvate carboxylase [Listeria monocytogenes str. Scott A]
          Length = 1153

 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 35/243 (14%), Positives = 82/243 (33%), Gaps = 25/243 (10%)

Query: 35  QIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSM 91
            +D+  ++  +      D     +H  +G   E+       E   I +         +  
Sbjct: 70  YLDI-ENIIEIAKESGAD----AIHPGYGFLSENIEFARRCEQEGIIFVGPKSKHLDMFG 124

Query: 92  DKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK- 146
           DK+++K+      +PV P     +   +   +       P +IK   GG   G+ V++  
Sbjct: 125 DKIKAKEQALLADIPVIPGSNGPVAGIKEVEEFGEKNGYPLMIKASLGGGGRGMRVVESK 184

Query: 147 ---DQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSY 202
               +S      ++ +    D++ +E+ V +   +   ++GD   ++  +          
Sbjct: 185 EHVKESFERASSEAKAAFGNDEVYVEKCVMNPKHIEVQILGDTHGNIVHLFERDCSIQRR 244

Query: 203 ELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
             K        V P   I  ++   +   A    + +        +FL        +++E
Sbjct: 245 HQK-----VVEVAPCNAITSELRNRICDAAVKLMKNVDYINAGTVEFLV--EGDDFYFIE 297

Query: 262 INV 264
           +N 
Sbjct: 298 VNP 300


>gi|328675203|gb|AEB27878.1| Carbamoyl-phosphate synthase large chain [Francisella cf. novicida
           3523]
          Length = 1094

 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 48/278 (17%), Positives = 100/278 (35%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG      L++ G+ V  +         D               SVG ++A  +PD    
Sbjct: 29  SGTQACKVLKEDGYTVFLVNSNPATIMTDPTTADKIFIEPITVESVGKIIARERPDAILP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      ILE   +    +   +   + ++ R  + ++  G+ V  +++
Sbjct: 89  TVGGQTALNCALALDKAGILEKYGVEMLGAKADSIDKAENRERFNKAMAKIGLEVPRNVV 148

Query: 113 VNRFTMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           V       + L  I  P +I+P       G  +    +     +    S +  +++LI++
Sbjct: 149 VQTMEQAYKALEDIGLPAIIRPSFTLGGSGGGIAYTKEEFESIVKNGLSLSPTNEVLIDE 208

Query: 171 YVDG-IELTCGVMGDASL-DVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEV 227
            + G  E    V+ D +   +   ++   D           +S  V PA  +    Y+ +
Sbjct: 209 SILGWKEYEMEVIRDKADNSIIVCSIENIDPMGIHT----GDSITVAPALTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P   K+  +E+N 
Sbjct: 265 RDASIAVLREIGVETGGSNVQFAVNPKDGKLVVIEMNP 302



 Score = 62.4 bits (151), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 31/221 (14%), Positives = 84/221 (38%), Gaps = 13/221 (5%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI--SPPYVIKPL 133
            IP   +      L+ D+ R K+++   G+    + +        + ++    P V++P 
Sbjct: 673 NIPILGTDPDKIDLAEDRERFKELLDKVGLKQPLNTIAYTINELKKKIVNVGYPVVVRPS 732

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEI 192
                  + ++     +   +  ++       +LI+++++   EL    + D    V   
Sbjct: 733 NVLGGRAMEIVHSQDELDTYIRTNAKCILEGPILIDKFLENATELDVDALADGGERVFVA 792

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
            + +   +  E    S +S   +P + +  +  +EV++      + +   G+    F + 
Sbjct: 793 GIME---HIEEAGIHSGDSACSIPTRSLSDEQIEEVKQATIKLARELNVIGLMNVQFAY- 848

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
             + +++ +E+N +   T     P +A   G S   +   +
Sbjct: 849 -QNGELYVIEVNPRASRT----VPFVAKATGNSIANIATKL 884


>gi|240278282|gb|EER41789.1| carboxylase:pyruvate/acetyl-CoA/propionyl-CoA [Ajellomyces
           capsulatus H143]
          Length = 634

 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 35/203 (17%), Positives = 74/203 (36%), Gaps = 13/203 (6%)

Query: 69  QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM----DSQHLI 124
           Q + E   +     G    A + DK+++K +  +C VP+  ++      +         +
Sbjct: 99  QRMWEEAVVEVISPGWEVLARTGDKLQAKMLAEACRVPILKAMKTPTSDIGLIRQFVAEV 158

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG--IELTCGVM 182
             P ++K + GG   GI  +K    +   + +++      ++ +E+   G    +   V+
Sbjct: 159 GYPVMVKAVDGGGGRGIRFVKGPDELQPAIDRATG-ESPKKVFVEKAAVGGFHHVEVQVV 217

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCR 241
           GD + +V  +           ++          PA +    + K V   A      I   
Sbjct: 218 GDGTGEVRHLWE-----RDCSVQRRFQKIVECAPAMMKNRTLIKRVIESALRMASEIKYL 272

Query: 242 GISRSDFLFDPLSRKVFWLEINV 264
            +   +FL      K ++ EIN 
Sbjct: 273 SLGTFEFLASEKLSKFYFQEINP 295


>gi|297562203|ref|YP_003681177.1| carbamoyl-phosphate synthase L chain ATP-binding protein
           [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
 gi|296846651|gb|ADH68671.1| Carbamoyl-phosphate synthase L chain ATP-binding protein
           [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
          Length = 702

 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 51/292 (17%), Positives = 87/292 (29%), Gaps = 51/292 (17%)

Query: 13  EVSLSSGKACASALEDAGFKVSQI--DVDRSVGLVLAHLKPDLAFNVLH----------- 59
           E++L         L   G   + +  D D +    LA    DLA  V H           
Sbjct: 24  EIALR----VMRTLRRMGISPATVYTDADANAPHTLAA---DLALRVEHYLDAEAIVALA 76

Query: 60  ------------GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV 107
                       G   E+           + +      A     DK+R+K  V++ GVPV
Sbjct: 77  LDCGATGVHPGYGFLSENAGFARACTDAGLVFVGPPASAIEAMGDKIRAKDTVAAAGVPV 136

Query: 108 C------PSILVNRFTM-DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160
                  P   +    +  +      P +IKP  GG   G+  +     +      +   
Sbjct: 137 LGGFTEKPGRPLGDDELLRAAEETGYPLLIKPSAGGGGKGMRSVHSPDDLVAGAAAARRE 196

Query: 161 NH----GDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215
                    LL+E+ V+    +   VM DA  +V  +   +        K          
Sbjct: 197 ALASFGDSTLLVERLVERPRHIEVQVMADAHGNVLHLGERECSLQRRHQK----VVEEAP 252

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK---VFWLEINV 264
              +       +   A  A ++ G  G    +F+ +          +LE+N 
Sbjct: 253 SPLLTDTQRATMGEAAVAAARSCGYVGAGTVEFIAEAGRGGDLSFSFLEMNT 304


>gi|227498533|ref|ZP_03928677.1| pyruvate carboxylase [Acidaminococcus sp. D21]
 gi|226903989|gb|EEH89907.1| pyruvate carboxylase [Acidaminococcus sp. D21]
          Length = 1143

 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 51/281 (18%), Positives = 99/281 (35%), Gaps = 34/281 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AV     S E  +SL   +A  S L   G K     +D    + +AH       + +H 
Sbjct: 31  IAV----YSKEDSLSLHRFRADESYLIGKGKKPVDAYLDIEEIIRVAHEHH---VDAIHP 83

Query: 61  NFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV--------PVCP 109
            +G   E+  +        I +    I    +  DK+ ++      G+        PV  
Sbjct: 84  GYGFLSENADLARRCAEEGITFIGPHIDHLTMFGDKVNARAQAKKAGIRFIPGSDGPVMN 143

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
              V +F  D    +  P ++K + GG   G+ +      +     ++ S        D+
Sbjct: 144 FAEVEKFAKD----VGFPIMLKAVNGGGGRGMRMAHCMSDLKDAYERAKSEAKLAFGNDE 199

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           + +E+Y+     +   +MGD   +V  +            K        + PA  +P  +
Sbjct: 200 IYLEKYIRNPKHVEVQIMGDEHGNVFHLYERDCSIQRRHQK-----VVEIAPAFALPRKL 254

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +E+   A    + +        +FL  P     +++E+N 
Sbjct: 255 RQEICNAAVTLMKNVNYVNAGTVEFLVTP-DGDFYFIEVNP 294


>gi|218778394|ref|YP_002429712.1| carbamoyl-phosphate synthase L chain ATP-binding [Desulfatibacillum
           alkenivorans AK-01]
 gi|218759778|gb|ACL02244.1| Carbamoyl phosphate synthase L chain, ATP binding domain protein
           [Desulfatibacillum alkenivorans AK-01]
          Length = 1107

 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 32/226 (14%), Positives = 78/226 (34%), Gaps = 23/226 (10%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+    A      + +         L  DK +++ +   CGVP+ P  + 
Sbjct: 76  AIHPGYGFLSENADFAAKCAEAGLVFIGPSPENLRLFGDKTQARLLAKECGVPMLPGTMG 135

Query: 114 NRFTMDSQHLI-----SPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
                + +  +         +IK + GG   G+  +     +         ++ +     
Sbjct: 136 GTSLDEVRSFMDGLGKDGAVMIKAVTGGGGRGMRPVYDSAGLEEAYSVCRSEAQAAFGAG 195

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            L +E+ +     +   VMGD +  V+ +   +        K          P+  +  +
Sbjct: 196 DLYVERLIPRARHIEIQVMGDGTGAVSHLWERECSLQRRNQK-----VVEFAPSPALTEE 250

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPL----SRKVFWLEINV 264
           +   + + A    + +  + ++  +F+ D          F++E+N 
Sbjct: 251 LRGLLVQAALKMAEKVKLKSLATFEFMVDADAETPEGSFFFMEVNP 296


>gi|302344544|ref|YP_003809073.1| carbamoyl-phosphate synthase, large subunit [Desulfarculus baarsii
           DSM 2075]
 gi|301641157|gb|ADK86479.1| carbamoyl-phosphate synthase, large subunit [Desulfarculus baarsii
           DSM 2075]
          Length = 1084

 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 50/278 (17%), Positives = 97/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     A+++ G +V  +         D +              V  VL   +PD    
Sbjct: 29  SGTQAVKAIKEEGIQVVLVNSNPATIMTDPELADRTYVEPITCEFVCEVLRRERPDALLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G    +  ++     ILE L +    +       +  +   ++ +   G+ V  S++
Sbjct: 89  TLGGQTALNTALEVAQTGILEELGVEMIGATPAVIRKAESRQEFREAMEKIGLRVPGSVI 148

Query: 113 VNRFTMD--SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                    +   +  P V++P       G  V      +        S +   +++IE+
Sbjct: 149 CRNLDDVRRAAEELGFPLVVRPAFTLGGTGGGVAYNIDELLETSRYGLSASLTSEVMIEE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            V G  E    VM D   +V  I   ++ D           +S  V PA+ +    Y+ +
Sbjct: 209 SVLGWKEFELEVMRDRKDNVVIICSIENLDPMGVHT----GDSITVAPAQTLTDREYQMM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RDASIAIMREIGVETGGSNVQFAINPKNGEMVVIEMNP 302



 Score = 55.1 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 72/197 (36%), Gaps = 10/197 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           LE    P   +   A   + D+ R  +++    +    +         +     I  P V
Sbjct: 660 LERAGAPILGTPPDAIDRAEDRDRFCELLRLLRLRQPDNGTATNVEEAVRIAEKIGYPVV 719

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++   Q++   +  +   +    +L+++++ D IE+    + D  L 
Sbjct: 720 VRPSYVLGGRAMEIVHDRQALEHYMATAVKASPDHPILVDKFLEDAIEVDVDAVCDGELC 779

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           V    +   +    +    S +S  VLP   +   +  E+++        +G RG+    
Sbjct: 780 VVAGIMEHIE----QAGVHSGDSACVLPPHTLGPAMIDEIRQATHALAFELGVRGLMNIQ 835

Query: 248 FLFDPLSRKVFWLEINV 264
           F        ++ LE+N 
Sbjct: 836 FAI--QGGLLYLLEVNP 850


>gi|308808958|ref|XP_003081789.1| acetyl-CoA carboxylase (ISS) [Ostreococcus tauri]
          Length = 1979

 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 40/245 (16%), Positives = 78/245 (31%), Gaps = 27/245 (11%)

Query: 42  VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +  V      D  +    G+  E+  +   L    I +      A     DK+ +  +  
Sbjct: 23  IVKVARKCSVDAVWPG-WGHASENPQLPFQLAYYGIAFLGPPASAMDAVGDKICANILAQ 81

Query: 102 SCGVPVCPS---------------------ILVNRFTMDSQHLISPPYVIKPLKGGSSLG 140
           SC V V P                      +       ++   I  P +IK  +GG   G
Sbjct: 82  SCNVNVIPWSGSGLTVLGTEIPGDILDQATLSTVDEAENAVKNIGFPVMIKASEGGGGKG 141

Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ-YVDGIELTCGVMGDASLDVTEIAVPKSDF 199
           I  +   + +     Q  +   G  + I++  VD   L   ++ D       +       
Sbjct: 142 IRKVNSMEDLRAGFAQVQAEVPGSPIFIQKLSVDSRHLEVQMVADKHGQAIALYGRDCSV 201

Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
                K        + P  +  ++ +   RLA       G  G+   ++L++  + +  +
Sbjct: 202 QRRHQKIIEEGPITIAPRALCEELERGAVRLAKKV----GYCGVGTVEYLYNIKTGEYSF 257

Query: 260 LEINV 264
           LE+N 
Sbjct: 258 LEVNP 262


>gi|293609984|ref|ZP_06692286.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292828436|gb|EFF86799.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 1076

 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 28/196 (14%), Positives = 74/196 (37%), Gaps = 8/196 (4%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYV 129
           LE    P   +   A   + D+ R +Q++    +    + +V            +  P V
Sbjct: 653 LEEAGTPIIGTSPDAIDRAEDRERFQQMIQRLQLRQPNNSIVKSAEEGISEAAKVGYPLV 712

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  ++ +   L ++   ++   +L+++++ D  E+    + D    
Sbjct: 713 VRPSYVLGGRAMEIVYNEEELKRYLREAVQASNEAPVLLDRFLDDATEVDVDCVSDGKDV 772

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           V    +   +       +S  ++  + P  +  +I  E++R      + +G  G+    F
Sbjct: 773 VIGGIMQHIEQAGI---HSGDSACSIPPYSLSKEIQDEMRRQTIAMAKELGVVGLMNVQF 829

Query: 249 LFDPLSRKVFWLEINV 264
                   ++ LE+N 
Sbjct: 830 AV--KGDDIYVLEVNP 843



 Score = 65.1 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 44/278 (15%), Positives = 94/278 (33%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D              ++V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPSMADATYIEPITWQTVAQIIEKERPDAVLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      +LE   +    +   A   + D+      +   G+    + +
Sbjct: 89  TMGGQTALNCALALDEHGVLEKYNVELIGATKDAIEKAEDRKLFDIAMRKIGLECPKAAI 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  ++ Q     P +I+P       G  +    +       +    +   QLLI++
Sbjct: 149 AETMEEALEIQSRFGFPVIIRPSFTMGGSGGGIAYNREEFLEICERGFDLSPTHQLLIDE 208

Query: 171 YVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + + +   A+   D           +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCAIENFDPMGVHT----GDSITVAPAQTLTDKEYQLM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P   ++  +E+N 
Sbjct: 265 RNASVAVLREIGVETGGSNVQFGINPKDGRMVVIEMNP 302


>gi|119025554|ref|YP_909399.1| carbamoyl-phosphate synthase large chain [Bifidobacterium
           adolescentis ATCC 15703]
 gi|167006436|sp|A1A0T4|CARB_BIFAA RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|118765138|dbj|BAF39317.1| carbamoyl-phosphate synthase large chain [Bifidobacterium
           adolescentis ATCC 15703]
          Length = 1126

 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 45/289 (15%), Positives = 98/289 (33%), Gaps = 38/289 (13%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQIDVDRS---------------------VGLV 45
           G ++E + S   G      L + G +V  ++ + +                     +  +
Sbjct: 21  GQAAEFDYS---GTQACRVLREEGIRVILVNSNPATIMTDPEMADATYIEPISTPILEQI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +A  +PD     L G    +  +      +L+   +    + + A     D+   K+VV 
Sbjct: 78  IAKERPDALLPTLGGQTALNAAMALGEAGVLKKYNVELIGASLDAIDRGEDRELFKKVVE 137

Query: 102 SCGVPVCPSILVNRFTMDS--QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G     S + +              P V++P      LG  +   +  +         
Sbjct: 138 EAGAESARSDIAHSLEEVDKIAEKFGYPLVVRPSFTMGGLGSGIAHDEDELHRIAGAGIH 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDV-TEIAVPKSDFYSYELKYSSLNSTHVLPA 217
           ++  D +LIE+ ++G  E    +M D   +V     +   D           +S  V P 
Sbjct: 198 YSPTDHVLIEESIEGWKEYELELMRDKKDNVLVVCPIQNVDPVGVHT----GDSITVAPV 253

Query: 218 K-IPLDIYKEVQRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
             +    Y++++ +     + +G   G     F  +P + ++  +E+N 
Sbjct: 254 FTLTDREYQKLRDIGIAIIRGVGVDTGGCNIQFAVNPDTGRIIVIEMNP 302



 Score = 52.0 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 33/233 (14%), Positives = 75/233 (32%), Gaps = 29/233 (12%)

Query: 67  LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTMDSQHLI 124
            + A L+   +P   +   +  L+ ++    +V+    +        L      ++ H I
Sbjct: 651 SLAARLKAAGVPILGTTPESIDLAENRELFGEVLKKADMNAPRYGTALSLDEAREAAHAI 710

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
             P +++P       G+ ++  D  +   + ++      D +     V G   +  ++  
Sbjct: 711 GYPVLVRPSYVLGGRGMEIVYDDAQLRKYVDRALKEAQADTV-----VSGRLPSPLLIDK 765

Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK--------------IPLDIYKEVQRL 230
              D  EI V     +  E  Y      HV  A               +  D  + ++  
Sbjct: 766 FLQDAVEIDV--DALFDGEELYIGGIMEHVEEAGVHSGDAACTLPPSTLSDDQIRRLREG 823

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283
            +   +  G +G+    + F      ++ +E N +   T     P  +   G 
Sbjct: 824 TYAIAKGCGVQGLINVQYAFMA--NTLYVIEANPRASRT----VPFASKATGV 870


>gi|116060255|emb|CAL56314.1| acetyl-CoA carboxylase (ISS) [Ostreococcus tauri]
          Length = 1983

 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 40/245 (16%), Positives = 78/245 (31%), Gaps = 27/245 (11%)

Query: 42  VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +  V      D  +    G+  E+  +   L    I +      A     DK+ +  +  
Sbjct: 23  IVKVARKCSVDAVWPG-WGHASENPQLPFQLAYYGIAFLGPPASAMDAVGDKICANILAQ 81

Query: 102 SCGVPVCPS---------------------ILVNRFTMDSQHLISPPYVIKPLKGGSSLG 140
           SC V V P                      +       ++   I  P +IK  +GG   G
Sbjct: 82  SCNVNVIPWSGSGLTVLGTEIPGDILDQATLSTVDEAENAVKNIGFPVMIKASEGGGGKG 141

Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ-YVDGIELTCGVMGDASLDVTEIAVPKSDF 199
           I  +   + +     Q  +   G  + I++  VD   L   ++ D       +       
Sbjct: 142 IRKVNSMEDLRAGFAQVQAEVPGSPIFIQKLSVDSRHLEVQMVADKHGQAIALYGRDCSV 201

Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
                K        + P  +  ++ +   RLA       G  G+   ++L++  + +  +
Sbjct: 202 QRRHQKIIEEGPITIAPRALCEELERGAVRLAKKV----GYCGVGTVEYLYNIKTGEYSF 257

Query: 260 LEINV 264
           LE+N 
Sbjct: 258 LEVNP 262


>gi|58038797|ref|YP_190761.1| carbamoyl phosphate synthase large subunit [Gluconobacter oxydans
           621H]
 gi|58001211|gb|AAW60105.1| Carbamoyl-phosphate synthase large chain [Gluconobacter oxydans
           621H]
          Length = 1084

 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 45/278 (16%), Positives = 92/278 (33%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  I         D                V  ++   KPD    
Sbjct: 29  SGAQACKALREEGYRVILINSNPATIMTDPGLADATYIEPITPEFVERIILKEKPDAVLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +       L+   +    +       + D+ + ++ +   G+    S +
Sbjct: 89  TMGGQTALNAAMALDKSGFLKKHNVELIGADAEVIDRAEDRQKFREAMDEIGIESPRSTI 148

Query: 113 VNRFTMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +        L  +  P +I+P       G  +    +     +      +   ++LIE+
Sbjct: 149 AHTLEEARAALADVGLPAIIRPSFTMGGAGGGIAYNREEFDQIVTGGLDASPTTEVLIEE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPA-KIPLDIYKEV 227
            V G  E    V+ D + +   I   ++ D           +S  V PA  +    Y+ +
Sbjct: 209 SVLGWKEYEMEVVRDTADNCIIICSIENIDPMGVHT----GDSITVAPALTLTDKEYQRM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P   ++  +E+N 
Sbjct: 265 RDASIACLRKIGVETGGSNVQFGVNPKDGRLVVIEMNP 302



 Score = 47.0 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 33/220 (15%), Positives = 75/220 (34%), Gaps = 16/220 (7%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           LE   IP   +   A   + D+ R + ++   G+    + +             +  P V
Sbjct: 659 LEEAGIPLLGTPADAIDRAEDRERFQAMLRKLGLRQPRNGIARSPAEAEKIAEEVGYPVV 718

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD----QLLIEQYV-DGIELTCGVMGD 184
            +P        + ++     +   L +       +     +L++ Y+ D IE     + D
Sbjct: 719 ARPSYVLGGRAMEIVYDKPGLKRYLNEVLRAAGPEVSTGPVLLDHYLNDAIEADVDCICD 778

Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244
                    +   +       +S  ++  + P  +   +  E++       + +G RG+ 
Sbjct: 779 GENVYVAGVMEHIEEAGI---HSGDSACSLPPYTLSPALGTELRSQTEAMARELGIRGL- 834

Query: 245 RSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
             +  +    ++VF LE+N +   T     P +A   G  
Sbjct: 835 -MNVQYAIKDQEVFVLEVNPRASRT----VPFVAKATGVP 869


>gi|52080154|ref|YP_078945.1| carbamoyl phosphate synthase large subunit [Bacillus licheniformis
           ATCC 14580]
 gi|52785531|ref|YP_091360.1| carbamoyl phosphate synthase large subunit [Bacillus licheniformis
           ATCC 14580]
 gi|319646067|ref|ZP_08000297.1| carbamoyl-phosphate synthetase [Bacillus sp. BT1B_CT2]
 gi|52003365|gb|AAU23307.1| carbamoyl-phosphate synthetase (catalytic subunit) [Bacillus
           licheniformis ATCC 14580]
 gi|52348033|gb|AAU40667.1| PyrAB [Bacillus licheniformis ATCC 14580]
 gi|317391817|gb|EFV72614.1| carbamoyl-phosphate synthetase [Bacillus sp. BT1B_CT2]
          Length = 1070

 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 31/221 (14%), Positives = 77/221 (34%), Gaps = 13/221 (5%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPL 133
            +    + +     + D+ + +Q +    VP             ++    I  P +++P 
Sbjct: 650 GVAILGTSLEDLDRAEDRDKFEQTLEMLQVPQPLGKTATSVEGAVEIAANIGYPVLVRPS 709

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
                  + ++  +  +   +  +   N    +LI++Y+ G E+    + D    V    
Sbjct: 710 YVLGGRAMEIVYHEAELLHYMENAVKINPQHPVLIDKYLTGKEIEVDAISDGETVVIPGI 769

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
           +   +           +S  V P + +  DI K+++       + +   G+    F+   
Sbjct: 770 MEHIERAGVHS----GDSIAVYPPQSLSEDIKKKLEAYTIKLAKGLNIVGLLNIQFVLSK 825

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
              +V+ LE+N +   T     P ++   G     L   ++
Sbjct: 826 --DEVYVLEVNPRSSRT----VPFLSKITGIPMANLATKVI 860



 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 48/297 (16%), Positives = 109/297 (36%), Gaps = 36/297 (12%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL++ G++V  ++ +                       +  ++   +PD     L G  G
Sbjct: 36  ALKEEGYEVILVNSNPATIMTDTEMADRVYIEPLTLEFLTRIIRKERPDAILPTLGGQTG 95

Query: 64  EDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--FT 117
            +  V      IL    +    + + A   + D+   + +++    PV  S +++     
Sbjct: 96  LNLAVELSEHGILAECGVEVLGTKLSAIQKAEDRDLFRSLMNELNEPVPESEIIHSLGEA 155

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IE 176
            +    I  P +++P       G  +   +  +   +      +   Q L+E+ + G  E
Sbjct: 156 REFVERIGFPVIVRPAYTLGGTGGGICSNEDELKEIVENGLKMSPVHQCLLEKSIAGYKE 215

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAH 235
           +   VM D+S     I V   +     +   + +S  V P++ +    Y+ ++ ++    
Sbjct: 216 IEYEVMRDSSDHA--IVVCNMENID-PVGIHTGDSIVVAPSQTLSDREYQMLRNVSLKII 272

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +A+   G        DP S + + +E+N  P ++  S     +   GY   +L   +
Sbjct: 273 RALEIEGGCNVQLALDPDSFQYYIIEVN--PRVSRSS--ALASKATGYPIAKLAAKI 325


>gi|11499884|ref|NP_071128.1| ribosomal protein S6 modification protein (rimK) [Archaeoglobus
           fulgidus DSM 4304]
 gi|2648215|gb|AAB88951.1| ribosomal protein S6 modification protein (rimK) [Archaeoglobus
           fulgidus DSM 4304]
          Length = 286

 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 25/192 (13%), Positives = 62/192 (32%), Gaps = 18/192 (9%)

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ---HLISPPYVIKPLKGGSSL 139
              +  +  +K+   + +    V +  ++       + +     +  P V+K      SL
Sbjct: 81  DSESIRICSNKIDMYKRLMKNSVRIPKTLFFYGDFENLESYAEQLGYPVVVKSPNSRFSL 140

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLI--EQYVDGIELTCGVMGDASLDVTEIAVPKS 197
            +      Q +   +  +  +    + LI  E      +   GV+    + V +  +PK 
Sbjct: 141 YVEKANSYQEL---VKTAKRFMKRSKALILQEYLPTAFDWRVGVLKGEVIYVCKYLMPKG 197

Query: 198 DF---YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
            +    + E K +  +   +     P ++ K     A      +        D     ++
Sbjct: 198 GWKVCDNVEGKKTWGDVRAIKVKNAPTELRKTAVMAAKSIGDGLYG-----VD--IKEVN 250

Query: 255 RKVFWLEINVQP 266
              + +E+N  P
Sbjct: 251 GCYYVIEVNDNP 262


>gi|325123192|gb|ADY82715.1| carbamoyl-phosphate synthase, large subunit [Acinetobacter
           calcoaceticus PHEA-2]
          Length = 1076

 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 28/196 (14%), Positives = 74/196 (37%), Gaps = 8/196 (4%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYV 129
           LE    P   +   A   + D+ R +Q++    +    + +V            +  P V
Sbjct: 653 LEEAGTPIIGTSPDAIDRAEDRERFQQMIQRLQLRQPNNSIVKSAEEGISEAAKVGYPLV 712

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  ++ +   L ++   ++   +L+++++ D  E+    + D    
Sbjct: 713 VRPSYVLGGRAMEIVYNEEELKRYLREAVQASNEAPVLLDRFLDDATEVDVDCVSDGKDV 772

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           V    +   +       +S  ++  + P  +  +I  E++R      + +G  G+    F
Sbjct: 773 VIGGIMQHIEQAGI---HSGDSACSIPPYSLSKEIQDEMRRQTIAMAKELGVVGLMNVQF 829

Query: 249 LFDPLSRKVFWLEINV 264
                   ++ LE+N 
Sbjct: 830 AV--KGDDIYVLEVNP 843



 Score = 65.1 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 44/278 (15%), Positives = 94/278 (33%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D              ++V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPSMADATYIEPITWQTVAQIIEKERPDAVLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      +LE   +    +   A   + D+      +   G+    + +
Sbjct: 89  TMGGQTALNCALALDEHGVLEKYNVELIGATKDAIEKAEDRKLFDIAMRKIGLECPKAAI 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  ++ Q     P +I+P       G  +    +       +    +   QLLI++
Sbjct: 149 AETMEEALEIQSRFGFPVIIRPSFTMGGSGGGIAYNREEFLEICERGFDLSPTHQLLIDE 208

Query: 171 YVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + + +   A+   D           +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCAIENFDPMGVHT----GDSITVAPAQTLTDKEYQLM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P   ++  +E+N 
Sbjct: 265 RNASVAVLREIGVETGGSNVQFGINPKDGRMVVIEMNP 302


>gi|319956001|ref|YP_004167264.1| formate-dependent phosphoribosylglycinamide formyltransferase
           [Nitratifractor salsuginis DSM 16511]
 gi|319418405|gb|ADV45515.1| formate-dependent phosphoribosylglycinamide formyltransferase
           [Nitratifractor salsuginis DSM 16511]
          Length = 388

 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 40/253 (15%), Positives = 94/253 (37%), Gaps = 33/253 (13%)

Query: 31  FKVSQIDV--DRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
            +   ID+     V  ++   +P      +     E   ++A+ E          ++ +A
Sbjct: 53  HRSYAIDMQDKEQVLELIEKERPTYILPEV-----EAISIEALFEAERR---GFHVIPNA 104

Query: 89  LSMDKMRSKQ-----VVSSCGVPVCPSILVNRFTM--DSQHLISPPYVIKPLKGGSSLGI 141
            +++K  +++        + G+       V+      ++   +  P VIKP+   S  G 
Sbjct: 105 EAVNKTMNRKNIRVFAAETLGLTTSAYRFVSSLEELKEAAEALGFPCVIKPVMSSSGHGQ 164

Query: 142 IVIKKDQSIPLDLLQS-SSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDF 199
            + +  + +P     +  +     +L++E+++    E+T   + + +  V    +     
Sbjct: 165 SIARSPEDLPKSWEIAKEARGDASELIVEEFIPFDYEITLLTVRNETGTVFCEPIGHIQQ 224

Query: 200 Y-SYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
              Y L +         P  +     K+ Q +A      +G RGI   +F       +V+
Sbjct: 225 DGDYILSW--------QPMPMKEAALKKAQEIAKAVTDGLGGRGIFGVEFFV--KGEEVY 274

Query: 259 WLEINVQP---GM 268
           + E++ +P   GM
Sbjct: 275 FSELSPRPHDTGM 287


>gi|301022195|ref|ZP_07186112.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli MS 69-1]
 gi|300397662|gb|EFJ81200.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli MS 69-1]
          Length = 449

 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 80/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         L  DK+ +   +   GVP  P    
Sbjct: 77  AIHPGYGFLSENANFAEQVERSGFIFIGPKAETIRLMGDKVSAIAAMKKAGVPCVPGSDG 136

Query: 112 -LVNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
            L +    +      I  P +IK   GG   G+ V++ D  +   +     ++ +    D
Sbjct: 137 PLGDDMDKNRAIAKRIGYPVIIKASGGGGGRGMRVVRGDAELAQSISMTRAEAKAAFSND 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+Y++    +   V+ D   +   +A           K          PA  I  +
Sbjct: 197 MVYMEKYLENPRHVEIQVLADGQGNAIYLAERDCSMQRRHQK-----VVEEAPAPGITPE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + + +      A   IG RG    +FLF   + + +++E+N 
Sbjct: 252 LRRYIGERCAKACIDIGYRGAGTFEFLF--ENGEFYFIEMNT 291


>gi|298481844|ref|ZP_07000034.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Bacteroides sp.
           D22]
 gi|298272066|gb|EFI13637.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Bacteroides sp.
           D22]
          Length = 503

 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 84/220 (38%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       E   + +        +    K  +++++   G+P+ P    
Sbjct: 76  AIHPGYGFLSENADFARRCEEEGVIFIGPSADIISKMGIKTEARKIMREAGLPIVPGTET 135

Query: 114 NRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN----HGDQ 165
               +D      + +  P ++K L GG   G+ +++ ++ +   L  S S        D 
Sbjct: 136 PVQGIDEVKKVANEVGYPIMLKALAGGGGKGMRLVRTEEEVETALRLSQSEAGTSFGNDA 195

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+Y++    +   +MGD   +V  +   +        K             +  +  
Sbjct: 196 VYIEKYIENPHHIEVQIMGDKYGNVVHLYERECSIQRRNQK----VIEESPSPFVKEETR 251

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K++ ++A  A + IG       +F+ D   +  ++LE+N 
Sbjct: 252 KKMLKVAVEACKKIGYYSAGTLEFMMDK-DQNFYFLEMNT 290


>gi|288932512|ref|YP_003436572.1| RimK domain protein ATP-grasp [Ferroglobus placidus DSM 10642]
 gi|288894760|gb|ADC66297.1| RimK domain protein ATP-grasp [Ferroglobus placidus DSM 10642]
          Length = 286

 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 29/204 (14%), Positives = 68/204 (33%), Gaps = 19/204 (9%)

Query: 71  ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ---HLISPP 127
           + E +          +  +  +K+     +    VP   +I       + +     +  P
Sbjct: 70  LAEEMGKKVI-DDSESIRICSNKVALYYRLKKSSVPTPKTIPFFGDFENLESYAEELGYP 128

Query: 128 YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI--EQYVDGIELTCGVMGDA 185
            V+K      SL +        +   +     +    + LI  E      +   GV+G  
Sbjct: 129 VVVKRPNSRFSLYVEKANNYYEL---IKVVKKYMRRSKALILQEYVPTAFDWRIGVLGRE 185

Query: 186 SLDVTEIAVPKSDFYSYEL---KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            +   +  +PK  +   +    K    N   V    +P     +++++A +A +++G   
Sbjct: 186 VIYACKYFMPKGGWKITDYIGGKKVWGNVKAVRVENLPS----KLRKIAVMAAKSVGNGL 241

Query: 243 ISRSDFLFDPLSRKVFWLEINVQP 266
               D     ++   + +E+N  P
Sbjct: 242 YG-VD--VKEINGNYYVIEVNDNP 262


>gi|87311564|ref|ZP_01093682.1| hypothetical protein DSM3645_24792 [Blastopirellula marina DSM
           3645]
 gi|87285686|gb|EAQ77602.1| hypothetical protein DSM3645_24792 [Blastopirellula marina DSM
           3645]
          Length = 298

 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 36/186 (19%), Positives = 66/186 (35%), Gaps = 20/186 (10%)

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSL 139
              G  + A++ DK ++ Q     GVP  P+ L   FT          YV KP  G  S 
Sbjct: 89  ISPGSDSVAIAGDKWKTYQSWLRAGVPTPPTWLAKDFTRADD---GERYVCKPRDGAGSQ 145

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDF 199
            I  ++  + +                +++ + DG+ ++ GV+ D +  V      +   
Sbjct: 146 DIDFLESAEKLAE----------RPGAIVQTFCDGLPVSAGVLSDGNQFVLLPPAIQLID 195

Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI-GCRGISRSDFLFDPLSRKVF 258
                +Y   + +      +  ++    Q LA      +   RG    D + +      F
Sbjct: 196 SCNGFQYRGGSWS------LSEELKSRAQALARRCAAGLPPFRGYIGVDMILNAKDGGDF 249

Query: 259 WLEINV 264
            +EIN 
Sbjct: 250 AIEINP 255


>gi|262368119|pdb|3JZF|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
           Complex With Benzimidazoles Series
 gi|262368120|pdb|3JZF|B Chain B, Crystal Structure Of Biotin Carboxylase From E. Coli In
           Complex With Benzimidazoles Series
 gi|262368121|pdb|3JZI|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
           Complex With Benzimidazole Series
 gi|262368122|pdb|3JZI|B Chain B, Crystal Structure Of Biotin Carboxylase From E. Coli In
           Complex With Benzimidazole Series
          Length = 486

 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 80/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         L  DK+ +   +   GVP  P    
Sbjct: 98  AIHPGYGFLSENANFAEQVERSGFIFIGPKAETIRLMGDKVSAIAAMKKAGVPCVPGSDG 157

Query: 112 -LVNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
            L +    +      I  P +IK   GG   G+ V++ D  +   +     ++ +    D
Sbjct: 158 PLGDDMDKNRAIAKRIGYPVIIKASGGGGGRGMRVVRGDAELAQSISMTRAEAKAAFSND 217

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+Y++    +   V+ D   +   +A           K          PA  I  +
Sbjct: 218 MVYMEKYLENPRHVEIQVLADGQGNAIYLAERDCSMQRRHQK-----VVEEAPAPGITPE 272

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + + +      A   IG RG    +FLF   + + +++E+N 
Sbjct: 273 LRRYIGERCAKACVDIGYRGAGTFEFLF--ENGEFYFIEMNT 312


>gi|254823658|ref|ZP_05228659.1| pyruvate carboxylase [Listeria monocytogenes FSL J1-194]
 gi|293592881|gb|EFG00642.1| pyruvate carboxylase [Listeria monocytogenes FSL J1-194]
          Length = 1146

 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 35/243 (14%), Positives = 82/243 (33%), Gaps = 25/243 (10%)

Query: 35  QIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSM 91
            +D+  ++  +      D     +H  +G   E+       E   I +         +  
Sbjct: 63  YLDI-ENIIEIAKESGAD----AIHPGYGFLSENIEFARRCEQEGIIFVGPKSKHLDMFG 117

Query: 92  DKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK- 146
           DK+++K+      +PV P     +   +   +       P +IK   GG   G+ V++  
Sbjct: 118 DKIKAKEQALLADIPVIPGSNGPVAGIKEVEEFGEKNGYPLMIKASLGGGGRGMRVVESK 177

Query: 147 ---DQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSY 202
               +S      ++ +    D++ +E+ V +   +   ++GD   ++  +          
Sbjct: 178 EHVKESFERASSEAKAAFGNDEVYVEKCVMNPKHIEVQILGDTHGNIVHLFERDCSIQRR 237

Query: 203 ELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
             K        V P   I  ++   +   A    + +        +FL        +++E
Sbjct: 238 HQK-----VVEVAPCNAITSELRNRICDAAVKLMKNVDYINAGTVEFLV--EGDDFYFIE 290

Query: 262 INV 264
           +N 
Sbjct: 291 VNP 293


>gi|226292599|gb|EEH48019.1| pyruvate carboxylase [Paracoccidioides brasiliensis Pb18]
          Length = 1196

 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 88/221 (39%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
           ++H  +G   E+      +E   + +            DK+ ++++   CGVPV P    
Sbjct: 122 LVHPGYGFLSENAEFARNVEKAGLVFVGPTPDTIDALGDKVSARRLAVKCGVPVVPGTPG 181

Query: 112 LVNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGDQ 165
            V RF            P +IK   GG   G+ V++  +S+         ++ +      
Sbjct: 182 PVGRFEEVKAFTDEYGFPIIIKAAFGGGGRGMRVVRDQESLRDSFERATSEAKAAFGNGT 241

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDI 223
           + +E+++D    +   ++GD   ++  +           ++        + PA  +P+++
Sbjct: 242 VFVERFLDKPKHIEVQLLGDNHGNIVHLYE-----RDCSVQRRHQKVVEIAPAKDLPVEV 296

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              +   A    +++  R    ++FL D  +R  +++EIN 
Sbjct: 297 RDSILADAVKLAKSVNYRNAGTAEFLVDQQNR-YYFIEINP 336


>gi|114048592|ref|YP_739142.1| phosphoribosylglycinamide formyltransferase 2 [Shewanella sp. MR-7]
 gi|123131139|sp|Q0HS20|PURT_SHESR RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|113890034|gb|ABI44085.1| phosphoribosylglycinamide formyltransferase 2 [Shewanella sp. MR-7]
          Length = 391

 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 46/278 (16%), Positives = 100/278 (35%), Gaps = 47/278 (16%)

Query: 19  GKACASALEDAGFKVSQID--------------------VDRSVGLVLAHLKPDLAFNVL 58
           GK  A  L+  G +V  +D                      +++  ++   KP L    +
Sbjct: 22  GKEVAIELQRLGVEVIGVDRYPNAPAMQIAHRSHVINMLDAKALRAIIELEKPHLVIPEI 81

Query: 59  HGNFGEDGLVQAILELL--EIPYTHSGILASALSMDKM-RSKQVVSSCGVPVCPSILVNR 115
                E    Q ++E+    +        A+ L+MD+    +    + G+P  P    + 
Sbjct: 82  -----EAIATQTLVEMEAEGLNVV-PTARATQLTMDREGIRRLAAETLGLPTSPYFFCDT 135

Query: 116 FTMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLD--LLQSSSWNHGDQLLIEQY 171
            T  +Q +  I  P V+KP+   S  G  VI+            Q      G ++++E +
Sbjct: 136 ETEFNQAIGKIGVPCVVKPVMSSSGKGQSVIRDVSQSAKAWQYAQEGGRAGGGRVIVEGF 195

Query: 172 VDGIELTCGVMGDASLDVTEIAVP---KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           +   +    ++  ++++      P   + +   Y   +         P  +  D+  + Q
Sbjct: 196 IP-FDYEITLLTISAVNGIHFCAPIGHRQEDGDYRESW--------QPQAMSADVLAKSQ 246

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
            +A    +A+G  G+   +         V++ E++ +P
Sbjct: 247 AIASKVVEALGGYGLFGVELFV--KGNDVYFSEVSPRP 282


>gi|16803112|ref|NP_464597.1| pyruvate carboxylase [Listeria monocytogenes EGD-e]
 gi|47096161|ref|ZP_00233761.1| pyruvate carboxylase [Listeria monocytogenes str. 1/2a F6854]
 gi|224502614|ref|ZP_03670921.1| pyruvate carboxylase [Listeria monocytogenes FSL R2-561]
 gi|254828450|ref|ZP_05233137.1| pyruvate carboxylase [Listeria monocytogenes FSL N3-165]
 gi|254830158|ref|ZP_05234813.1| pyruvate carboxylase [Listeria monocytogenes 10403S]
 gi|254898754|ref|ZP_05258678.1| pyruvate carboxylase [Listeria monocytogenes J0161]
 gi|254911757|ref|ZP_05261769.1| pyruvate carboxylase [Listeria monocytogenes J2818]
 gi|254936083|ref|ZP_05267780.1| pyruvate carboxylase [Listeria monocytogenes F6900]
 gi|284801404|ref|YP_003413269.1| pyruvate carboxylase [Listeria monocytogenes 08-5578]
 gi|284994546|ref|YP_003416314.1| pyruvate carboxylase [Listeria monocytogenes 08-5923]
 gi|16410474|emb|CAC99150.1| pycA [Listeria monocytogenes EGD-e]
 gi|47015510|gb|EAL06443.1| pyruvate carboxylase [Listeria monocytogenes str. 1/2a F6854]
 gi|258600846|gb|EEW14171.1| pyruvate carboxylase [Listeria monocytogenes FSL N3-165]
 gi|258608673|gb|EEW21281.1| pyruvate carboxylase [Listeria monocytogenes F6900]
 gi|284056966|gb|ADB67907.1| pyruvate carboxylase [Listeria monocytogenes 08-5578]
 gi|284060013|gb|ADB70952.1| pyruvate carboxylase [Listeria monocytogenes 08-5923]
 gi|293589709|gb|EFF98043.1| pyruvate carboxylase [Listeria monocytogenes J2818]
          Length = 1146

 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 35/243 (14%), Positives = 82/243 (33%), Gaps = 25/243 (10%)

Query: 35  QIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSM 91
            +D+  ++  +      D     +H  +G   E+       E   I +         +  
Sbjct: 63  YLDI-ENIIEIAKESGAD----AIHPGYGFLSENIEFARRCEQEGIIFVGPKSKHLDMFG 117

Query: 92  DKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK- 146
           DK+++K+      +PV P     +   +   +       P +IK   GG   G+ V++  
Sbjct: 118 DKIKAKEQALLADIPVIPGSNGPVAGIKEVEEFGEKNGYPLMIKASLGGGGRGMRVVESK 177

Query: 147 ---DQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSY 202
               +S      ++ +    D++ +E+ V +   +   ++GD   ++  +          
Sbjct: 178 EHVKESFERASSEAKAAFGNDEVYVEKCVMNPKHIEVQILGDTHGNIVHLFERDCSIQRR 237

Query: 203 ELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
             K        V P   I  ++   +   A    + +        +FL        +++E
Sbjct: 238 HQK-----VVEVAPCNAITSELRNRICDAAVKLMKNVDYINAGTVEFLV--EGDDFYFIE 290

Query: 262 INV 264
           +N 
Sbjct: 291 VNP 293


>gi|225619452|ref|YP_002720694.1| L-lactate dehydrogenase [Brachyspira hyodysenteriae WA1]
 gi|225214271|gb|ACN83005.1| L-lactate dehydrogenase [Brachyspira hyodysenteriae WA1]
          Length = 723

 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 42/246 (17%), Positives = 96/246 (39%), Gaps = 19/246 (7%)

Query: 58  LHG--NFGEDG--LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
           +HG    G D    V A+   L +P   +    +  + +K+R ++      VP      V
Sbjct: 71  IHGVITVGTDASTTVAAVANALGLP--GNRFEDAYAASNKIRMRERFKKNNVPQPNFFPV 128

Query: 114 NRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
             +   M++   ++ P V+KP     + G++ +  +  I     ++ S +   ++++E++
Sbjct: 129 WNYEEAMEAYKHLNTPVVVKPADNMGARGVMKVSNESDILSAFNRAKSASPSGEVIMEEF 188

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           +DG EL+  ++        EI V        E     + + H++P+ +  +   +   + 
Sbjct: 189 MDGPELSIDMLIYND----EIHVTGVADRIIEFPPFFIETGHIMPSALEKEKIDDAINVM 244

Query: 232 FLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
               +A+  + G ++ D         V  +   +  G      +P      G +   L+ 
Sbjct: 245 KAGIKALNLKIGAAKGDIKVTKNGAMVGEIAARLSGGFMSAYTYPL---ATGVN---LIK 298

Query: 291 WMVEDA 296
             +E A
Sbjct: 299 NAIEIA 304


>gi|183981273|ref|YP_001849564.1| bifunctional protein acetyl-/propionyl-coenzyme A carboxylase alpha
           chain AccA3 [Mycobacterium marinum M]
 gi|183174599|gb|ACC39709.1| bifunctional protein acetyl-/propionyl-coenzyme A carboxylase alpha
           chain AccA3 [Mycobacterium marinum M]
          Length = 597

 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 79/222 (35%), Gaps = 19/222 (8%)

Query: 56  NVLHGNFG---EDGLV-QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           N +H  +G   E+    QA+++   + +      +     DK+ ++ + +    P+ P  
Sbjct: 83  NAIHPGYGFLSENADFAQAVID-AGLIWIGPSPQSIRDLGDKVTARHIAARAKAPLVPGT 141

Query: 112 LVNRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL----DLLQSSSWNHG 163
                  +           P  IK   GG   G+ V +  + IP      + ++++    
Sbjct: 142 PDPVKNAEEVVAFAQEYGLPIAIKAAFGGGGRGMKVARTMEEIPELYESAVREATAAFGR 201

Query: 164 DQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD 222
            +  +E+Y+D    +   V+ D   +V    V  +   S + +Y  L         +   
Sbjct: 202 GECFVERYLDKPRHVEAQVIADQHGNVV---VAGTRDCSLQRRYQKL-VEEAPAPFLSDA 257

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             KE+   A    +     G    ++L       + +LE+N 
Sbjct: 258 QRKEIHESAKRICKEAHYYGAGTVEYLV-GQDGLISFLEVNT 298


>gi|110590389|pdb|2GPW|A Chain A, Crystal Structure Of The Biotin Carboxylase Subunit, F363a
           Mutant, Of Acetyl-Coa Carboxylase From Escherichia Coli.
 gi|110590390|pdb|2GPW|B Chain B, Crystal Structure Of The Biotin Carboxylase Subunit, F363a
           Mutant, Of Acetyl-Coa Carboxylase From Escherichia Coli.
 gi|110590391|pdb|2GPW|C Chain C, Crystal Structure Of The Biotin Carboxylase Subunit, F363a
           Mutant, Of Acetyl-Coa Carboxylase From Escherichia Coli.
 gi|110590392|pdb|2GPW|D Chain D, Crystal Structure Of The Biotin Carboxylase Subunit, F363a
           Mutant, Of Acetyl-Coa Carboxylase From Escherichia Coli
          Length = 469

 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 80/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         L  DK+ +   +   GVP  P    
Sbjct: 97  AIHPGYGFLSENANFAEQVERSGFIFIGPKAETIRLMGDKVSAIAAMKKAGVPCVPGSDG 156

Query: 112 -LVNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
            L +    +      I  P +IK   GG   G+ V++ D  +   +     ++ +    D
Sbjct: 157 PLGDDMDKNRAIAKRIGYPVIIKASGGGGGRGMRVVRGDAELAQSISMTRAEAKAAFSND 216

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+Y++    +   V+ D   +   +A           K          PA  I  +
Sbjct: 217 MVYMEKYLENPRHVEIQVLADGQGNAIYLAERDCSMQRRHQK-----VVEEAPAPGITPE 271

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + + +      A   IG RG    +FLF   + + +++E+N 
Sbjct: 272 LRRYIGERCAKACVDIGYRGAGTFEFLF--ENGEFYFIEMNT 311


>gi|83644090|ref|YP_432525.1| carbamoyl phosphate synthase large subunit [Hahella chejuensis KCTC
           2396]
 gi|83632133|gb|ABC28100.1| Carbamoylphosphate synthase large subunit [Hahella chejuensis KCTC
           2396]
          Length = 1075

 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 47/278 (16%), Positives = 99/278 (35%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +              D         R+V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPAMADATYIEPINWRTVAKIIEKERPDALLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +    + +LE   +    +   A   + D+ R  + + + G+    S +
Sbjct: 89  TMGGQTALNCALDLAREGVLEQYGVEMIGATQDAIDKAEDRERFDKAMKAIGLATPRSAI 148

Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +      Q    I  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHSMEEALQVLDQIGFPAIIRPSFTMGGSGGGIAYNKEEFIEICERGLELSPTRELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D   +   I   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKKDNCIIICAIEN----FDAMGVHTGDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  DP + ++  +E+N 
Sbjct: 265 RNASVAVLREIGVETGGSNVQFGMDPETGRMVVIEMNP 302



 Score = 66.3 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 42/286 (14%), Positives = 102/286 (35%), Gaps = 31/286 (10%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH-----GNFGEDG---- 66
           AL D G++   I         D D S  L    +  +    ++H     G     G    
Sbjct: 587 ALRDDGYETIMINCNPETVSTDYDTSDRLYFEPITLEDVLAIVHLEKPRGVIVHYGGQTP 646

Query: 67  -LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHL 123
             +   LE   +P   +   A   + D+ R +Q+V   G+   P+         +     
Sbjct: 647 LKLARGLEEAGVPIIGTTPDAIDRAEDRERFQQMVVRLGLRQPPNATARSQEEALSKAKE 706

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVM 182
           I  P V++P        + ++  +  +   +  +   ++   +L++ +++  IE+    +
Sbjct: 707 IGYPLVVRPSYVLGGRAMEIVYDEVELQRYMRDAVRVSNDSPVLLDHFLNAAIEVDIDAV 766

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    V    +   +       +S  ++  + P  +P D+  +++        A+  + 
Sbjct: 767 SDGEKVVIGAIMQHIEQAGV---HSGDSACSLPPYSLPADVQDKMRETVIKM--ALELQV 821

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           +   +        +++ +E+N +   T     P ++   G S  ++
Sbjct: 822 VGLMNVQLAYQDGEIYVIEVNPRASRT----VPFVSKAIGVSLAKV 863


>gi|46907300|ref|YP_013689.1| pyruvate carboxylase [Listeria monocytogenes serotype 4b str.
           F2365]
 gi|226223686|ref|YP_002757793.1| pyruvate carboxylase [Listeria monocytogenes Clip81459]
 gi|254853044|ref|ZP_05242392.1| pyruvate carboxylase [Listeria monocytogenes FSL R2-503]
 gi|254933177|ref|ZP_05266536.1| pyruvate carboxylase [Listeria monocytogenes HPB2262]
 gi|300765919|ref|ZP_07075892.1| pyruvate carboxylase [Listeria monocytogenes FSL N1-017]
 gi|46880567|gb|AAT03866.1| pyruvate carboxylase [Listeria monocytogenes serotype 4b str.
           F2365]
 gi|225876148|emb|CAS04854.1| Putative pyruvate carboxylase [Listeria monocytogenes serotype 4b
           str. CLIP 80459]
 gi|258606392|gb|EEW19000.1| pyruvate carboxylase [Listeria monocytogenes FSL R2-503]
 gi|293584737|gb|EFF96769.1| pyruvate carboxylase [Listeria monocytogenes HPB2262]
 gi|300513381|gb|EFK40455.1| pyruvate carboxylase [Listeria monocytogenes FSL N1-017]
 gi|328475315|gb|EGF46091.1| pyruvate carboxylase [Listeria monocytogenes 220]
          Length = 1146

 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 35/243 (14%), Positives = 82/243 (33%), Gaps = 25/243 (10%)

Query: 35  QIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSM 91
            +D+  ++  +      D     +H  +G   E+       E   I +         +  
Sbjct: 63  YLDI-ENIIEIAKESGAD----AIHPGYGFLSENIEFARRCEQEGIIFVGPKSKHLDMFG 117

Query: 92  DKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK- 146
           DK+++K+      +PV P     +   +   +       P +IK   GG   G+ V++  
Sbjct: 118 DKIKAKEQALLADIPVIPGSNGPVAGIKEVEEFGEKNGYPLMIKASLGGGGRGMRVVESK 177

Query: 147 ---DQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSY 202
               +S      ++ +    D++ +E+ V +   +   ++GD   ++  +          
Sbjct: 178 EHVKESFERASSEAKAAFGNDEVYVEKCVMNPKHIEVQILGDTHGNIVHLFERDCSIQRR 237

Query: 203 ELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
             K        V P   I  ++   +   A    + +        +FL        +++E
Sbjct: 238 HQK-----VVEVAPCNAITSELRNRICDAAVKLMKNVDYINAGTVEFLV--EGDDFYFIE 290

Query: 262 INV 264
           +N 
Sbjct: 291 VNP 293


>gi|78067130|ref|YP_369899.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia sp.
           383]
 gi|123567942|sp|Q39E61|PURT_BURS3 RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|77967875|gb|ABB09255.1| formate-dependent phosphoribosylglycinamide formyltransferase
           [Burkholderia sp. 383]
          Length = 404

 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 47/279 (16%), Positives = 98/279 (35%), Gaps = 42/279 (15%)

Query: 19  GKACASALEDAGFKVSQID----------------VDRSVGLVLAHL----KPDLAFNVL 58
           GK    AL+  G +V  +D                +D +    L  +    +P L    +
Sbjct: 27  GKEVIIALQRLGVEVVAVDRYPDAPGHQVAHRAHVIDMTDAAALRAIVEAERPHLIVPEI 86

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKM-RSKQVVSSCGVPVCPSILVNRFT 117
                 D L  A +E   +        A+ L+M++    +      G+P  P    + F 
Sbjct: 87  EAI-ATDAL--AAIEAAGLAEVIPTARATQLTMNREGIRRLAAEELGLPTSPYAFADSFE 143

Query: 118 MDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH--GDQLLIEQYVD 173
             S  +  I  P V+KP+   S  G  V+K +  +      + +       ++++E ++D
Sbjct: 144 AFSAAIAKIGMPCVVKPVMSSSGKGQSVVKTEADVKPAWDYAMAGGRVNHGRVIVEGFID 203

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSY------ELKYSSLNSTHVLPAKIPLDIYKEV 227
             +          L V  I        +Y       ++ +        P  +     ++ 
Sbjct: 204 -FDYEI-----TQLTVRAIDPATDATRTYFCEPVGHVQVAGDYVESWQPQPMSAVALEKS 257

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
           + +A    +A+G RG+   +   +     V++ E++ +P
Sbjct: 258 REIAHKVTEALGGRGMFGVELFVN--GDDVWFSEVSPRP 294


>gi|332289579|ref|YP_004420431.1| phosphoribosylglycinamide formyltransferase 2 [Gallibacterium
           anatis UMN179]
 gi|330432475|gb|AEC17534.1| phosphoribosylglycinamide formyltransferase 2 [Gallibacterium
           anatis UMN179]
          Length = 393

 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 47/284 (16%), Positives = 93/284 (32%), Gaps = 52/284 (18%)

Query: 19  GKACASALEDAGFKVSQID--------------------VDRSVGLVLAHLKPDLAFNVL 58
           GK     L+  G +V  +D                       ++  ++   KPD     +
Sbjct: 24  GKEVVIELQRLGVEVIAVDRYADAPAHQVAHRAYTISMLDGDALKKLIEKEKPDYIVPEV 83

Query: 59  HGNFGEDGLVQAILELLEIPY-THSGILASALSMDKM-RSKQVVSSCGVPVCPSILVNRF 116
                E      ++EL +  Y       A  L+M++    +      G+P  P   V+ F
Sbjct: 84  -----EAIATDTLVELEQQGYNVIPTAKAVKLTMNREGIRRLAAEELGLPTSPFQFVDNF 138

Query: 117 T--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD--LLQSSSWNHGDQLLIEQYV 172
                +   I  P V+KP+   S  G  ++K  + +       Q      G+++++E ++
Sbjct: 139 ADFQQAVEKIGLPCVVKPIMSSSGHGQSILKNREQLQQAWQYAQEGGRAGGERVIVEGFI 198

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-----LNSTHVLPAKIPLDIYKEV 227
                          ++T + V      S+                  P  +     ++ 
Sbjct: 199 R-----------FDYEITLLTVRHRGGTSFLAPIGHVQVDGDYRESWQPQAMSEIALQKA 247

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP---GM 268
           Q +A     A+G  GI   +        +V + E++ +P   GM
Sbjct: 248 QHIAEKITGALGGYGIFGVEMFV--CGDEVIFNEVSPRPHDTGM 289


>gi|284008664|emb|CBA75302.1| biotin carboxylase [Arsenophonus nasoniae]
          Length = 448

 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 36/217 (16%), Positives = 77/217 (35%), Gaps = 18/217 (8%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN---- 114
           +G   E+      +E     +         L  DK+ + + +   GVP  P         
Sbjct: 82  YGFLSENADFAEKVERSGFIFIGPKPETIRLMGDKVSAIEAMKKAGVPCVPGSDGPLGND 141

Query: 115 -RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGDQLLIE 169
            +      + I  P +IK   GG   G+ V++ +  +   +     ++ +  +   + +E
Sbjct: 142 IKTNKTIANRIGYPVIIKASGGGGGRGMRVVRNESDLEQAITLTRAEAKAAFNNSMVYME 201

Query: 170 QYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
           ++++    +   V+ D   +   +A           K          PA  I  D+ K +
Sbjct: 202 KFLENPRHIEIQVLADGQGNAIYLAERDCSMQRRHQK-----VVEEAPAPGIKADMRKSI 256

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
                 A   I  RG    +FL+   + + +++E+N 
Sbjct: 257 GERCAKACLDIDYRGAGTFEFLY--ENGEFYFIEMNT 291


>gi|316934260|ref|YP_004109242.1| carbamoyl-phosphate synthase L chain ATP-binding protein
           [Rhodopseudomonas palustris DX-1]
 gi|315601974|gb|ADU44509.1| Carbamoyl-phosphate synthase L chain ATP-binding protein
           [Rhodopseudomonas palustris DX-1]
          Length = 670

 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 77/220 (35%), Gaps = 18/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E            + +             K  SK ++   GVP+ P    
Sbjct: 85  AVHPGYGFLSESAEFAQACADAGLVFVGPTPEMITAMGSKSGSKALMEKAGVPLVPGYHG 144

Query: 114 NRFTM----DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
                    ++   I  P ++K   GG   G+ V++K   +   ++    ++ +    D 
Sbjct: 145 AAQDEATLAEATDRIGFPVLVKASAGGGGRGMRVVRKADELSAAIVSAKREAKAAFGDDT 204

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           LLIE+YVD    +   ++GD+  ++  +   +        K             +     
Sbjct: 205 LLIERYVDNPRHIEVQIVGDSHGNLVSLFERECTLQRRHQK----VIEEAPSPTLDAAQR 260

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +V   A  A  A+   G    +F+ D     VF++E+N 
Sbjct: 261 DKVCEAARRAAGAVNYVGAGTIEFVSDGKD--VFFIEMNT 298


>gi|254372021|ref|ZP_04987514.1| carbamoyl-phosphate synthase [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|151569752|gb|EDN35406.1| carbamoyl-phosphate synthase [Francisella novicida GA99-3549]
          Length = 1094

 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 48/278 (17%), Positives = 100/278 (35%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG      L++ G+ V  +         D               SVG ++A  +PD    
Sbjct: 29  SGTQACKVLKEDGYTVFLVNSNPATIMTDPTTADKIFIEPITVESVGKIIARERPDAILP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      ILE   +    +   +   + ++ R  + ++  G+ V  +++
Sbjct: 89  TVGGQTALNCALALDKAGILEKYNVEMLGAKADSIDKAENRERFNKAMAKIGLEVPRNVV 148

Query: 113 VNRFTMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           V       + L  I  P +I+P       G  +    +     +    S +  +++LI++
Sbjct: 149 VQSMEQAYKALEDIGLPAIIRPSFTLGGSGGGIAYTKEEFEKIVKNGLSLSPTNEVLIDE 208

Query: 171 YVDG-IELTCGVMGDASL-DVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEV 227
            + G  E    V+ D +   +   ++   D           +S  V PA  +    Y+ +
Sbjct: 209 SILGWKEYEMEVIRDKADNSIIVCSIENIDPMGIHT----GDSITVAPALTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P   K+  +E+N 
Sbjct: 265 RDASIAVLREIGVETGGSNVQFAVNPKDGKLVVIEMNP 302



 Score = 61.3 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 34/221 (15%), Positives = 85/221 (38%), Gaps = 13/221 (5%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI--SPPYVIKPL 133
            IP   +      L+ D+ R K+++   G+    + +        + ++    P V++P 
Sbjct: 673 NIPILGTDPDKIDLAEDRERFKELLDKVGLKQPLNTIAYTINELKKKIVNVGYPVVVRPS 732

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEI 192
                  + +I   + +   +  +S       +LI++++ D  EL    + D    V   
Sbjct: 733 NVLGGRAMEIIHSQEELDAYIKTNSKCILEGPILIDKFLEDATELDVDALADGGERVFVA 792

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
            + +   +  E    S +S   +P + +  +  +EV++      + +   G+    F + 
Sbjct: 793 GIME---HIEEAGIHSGDSACSIPTRSLSNEQIEEVKQATIKLARELNVIGLMNVQFAY- 848

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
             + +++ +E+N +   T     P +A   G S   +   +
Sbjct: 849 -QNGQLYVIEVNPRASRT----VPFVAKATGNSIANIATKL 884


>gi|160901141|ref|YP_001566723.1| cyanophycin synthetase [Delftia acidovorans SPH-1]
 gi|160366725|gb|ABX38338.1| cyanophycin synthetase [Delftia acidovorans SPH-1]
          Length = 875

 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 24/112 (21%), Positives = 50/112 (44%), Gaps = 5/112 (4%)

Query: 88  ALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--QHLISPPYVIKPLKGGSSLGIIV-I 144
           +++ DK  +K+++ + GVPV     V            +  P V+KP  G    G++V I
Sbjct: 216 SIAQDKDLTKRLLHAAGVPVPLGRPVKDVEEAWLVAQEVGLPVVVKPQDGNQGKGVVVNI 275

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK 196
              + +      +S +  GD +++E+++ G +    V+G   +       P+
Sbjct: 276 TTHEQLKAAFATASEF--GDDIMVERFLPGHDFRLLVVGGQLVAAARREPPQ 325


>gi|145896|gb|AAA23748.1| biotin carboxylase [Escherichia coli]
          Length = 449

 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 80/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         L  DK+ +   +   GVP  P    
Sbjct: 77  AIHPGYGFLSENANFAEQVERSGFIFIGPKAETIRLMGDKVSAIAAMKKAGVPCVPGSDG 136

Query: 112 -LVNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
            L +    +      I  P +IK   GG   G+ V++ D  +   +     ++ +    D
Sbjct: 137 PLGDDMDKNRAIAKRIGYPVIIKASGGGGGRGMRVVRGDAELAQSISMTRAEAKAAFSND 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+Y++    +   V+ D   +   +A           K          PA  I  +
Sbjct: 197 MVYMEKYLENPRHVEIQVLADGQGNAIYLAERDCSMQRRHQK-----VVEEAPAPGITPE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + + +      A   IG RG    +FLF   + + +++E+N 
Sbjct: 252 LRRYIGERCAKACVDIGYRGAGTFEFLF--ENGEFYFIEMNT 291


>gi|71281294|ref|YP_267695.1| acetyl-CoA carboxylase biotin carboxylase subunit [Colwellia
           psychrerythraea 34H]
 gi|71147034|gb|AAZ27507.1| acetyl-CoA carboxylase, biotin carboxylase [Colwellia
           psychrerythraea 34H]
          Length = 448

 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 46/291 (15%), Positives = 99/291 (34%), Gaps = 50/291 (17%)

Query: 13  EVSLSSGKACASALEDAGFKVSQID--VDRSVGLVLAHLK---------PDLAFN----- 56
           E++L        A ++ G K   +    D+++  VL   +         PD   N     
Sbjct: 12  EIALR----ILRACKELGIKTVAVHSTADKNLKHVLLADETICIGKAPAPDSYLNIPAII 67

Query: 57  ---------VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCG 104
                     +H  +G   E+      +E     +      +  +  DK+++ + +   G
Sbjct: 68  TAAELTNAVAIHPGYGFLAENADFAEQVENSGFAFIGPKAESIRIMGDKVQAIKAMKVAG 127

Query: 105 VPVCPSI---LVNRFTMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
           VP  P     L +    +  H   I  P ++K   GG   G+ V++ +  +   +  +  
Sbjct: 128 VPCVPGSDGPLDDDEEANKAHAKRIGYPIIVKAAGGGGGRGMRVVRSEAELVESIALTKK 187

Query: 160 WN----HGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHV 214
                   D + +E++++    +   +M D       +            K         
Sbjct: 188 EAGTIFKNDMVYMEKFLENPRHVEIQIMADGKGAAIHLGERDCSMQRRHQK-----VVEE 242

Query: 215 LPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            PA  I  ++  ++      A   I  RG    +FL+   + + +++E+N 
Sbjct: 243 APAPGITPEMRAKIGERCCKACVDINYRGAGTFEFLY--ENGEFYFIEMNT 291


>gi|117920116|ref|YP_869308.1| 3-methylcrotonoyl-CoA carboxylase subunit alpha [Shewanella sp.
           ANA-3]
 gi|117612448|gb|ABK47902.1| 3-methylcrotonoyl-CoA carboxylase, alpha subunit [Shewanella sp.
           ANA-3]
          Length = 674

 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 82/221 (37%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       E   I +   G  A      K  +K ++++  VP+ P    
Sbjct: 77  AIHPGYGFLSENADFARKCEAAGIVFVGPGSDAIDAMGSKSAAKAIMTAAQVPLVPGYHG 136

Query: 114 NRFTM----DSQHLISPPYVIKPLKGGSSLGIIVIKKD----QSIPLDLLQSSSWNHGDQ 165
           +  T          I  P +IK   GG   G+ +++ +     +I     +++S    D+
Sbjct: 137 DDQTDATLKAEALKIGFPMLIKAAYGGGGKGMRIVEHEGEIMDAINSARREAASSFGNDK 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           LL+E+Y+     +   V  D   +   ++           K          PA  +  ++
Sbjct: 197 LLMERYLRQPRHVEVQVFADTFGNAIYLSDRDCSIQRRHQK-----VVEEAPAPGLSDEL 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             ++   A  A +AI   G    +FL D      +++E+N 
Sbjct: 252 RTQMGEAAVAAAKAIDYVGAGTVEFLLDT-DNSFYFMEMNT 291


>gi|327438533|dbj|BAK14898.1| phosphoribosylaminoimidazole carboxylase [Solibacillus silvestris
           StLB046]
          Length = 374

 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 33/196 (16%), Positives = 76/196 (38%), Gaps = 15/196 (7%)

Query: 70  AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQHLISPP 127
            +  L ++ Y   G     ++ +++  KQ++   G PV P I+ + +   ++    I  P
Sbjct: 84  GLKRLTQMAYVPQGAELVRITQNRVTEKQMIVEAGCPVAPYIVTSTYEELLEKIGEIGFP 143

Query: 128 YVIKPLKGG-SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDA 185
            ++K  +GG    G  ++K  + + L       + H  Q + E +V    E++  V  + 
Sbjct: 144 CIVKTARGGYDGKGQQLLKSAEDLQLAKDL---FTH-SQCIAEGFVPFTKEISVIVQRNG 199

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
             +   + V ++   ++ L         ++PA+I L   +  +  A     ++   G   
Sbjct: 200 DGETYCLPVGENIHINHIL------HETIVPARIELSTAQLAEEAALKIADSLKLIGTLA 253

Query: 246 SDFLFDPLSRKVFWLE 261
            +         +   E
Sbjct: 254 VEMFVLE-DGSIVINE 268


>gi|296159163|ref|ZP_06841990.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia sp.
           Ch1-1]
 gi|295890724|gb|EFG70515.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia sp.
           Ch1-1]
          Length = 404

 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 45/277 (16%), Positives = 93/277 (33%), Gaps = 38/277 (13%)

Query: 19  GKACASALEDAGFKVSQID----------------VDRSVGLVLAHL----KPDLAFNVL 58
           GK    AL+  G +V  +D                +D +    L  L    +P L    +
Sbjct: 27  GKEVIIALQRLGVEVIAVDRYPNAPGHQVAHRAHVIDMTNRAALRALVEQERPHLIVPEI 86

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKM-RSKQVVSSCGVPVCPSILVNRFT 117
                ++    A +E   +        A+ L+M++    +      G+P  P    +   
Sbjct: 87  EAIATDE---LAAIESAGLAEVIPTARATQLTMNREGIRRLAAEELGLPTSPYAFADSLD 143

Query: 118 MDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH--GDQLLIEQYVD 173
                   +  P V+KP+   S  G  V++ D  +      + +       ++++E ++D
Sbjct: 144 ELRAGIAKVGYPCVVKPVMSSSGKGQSVLRSDADVEPAWQYAMAGGRVNHGRVIVEGFID 203

Query: 174 ----GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
                 +LT   +  AS +V+               Y         P  +     +  + 
Sbjct: 204 FEYEITQLTVRAINPASGEVSTYFCDPIGHVQVAGDY----VESWQPQPMSPLALERSRE 259

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
           +A     A+G RG+   +         V++ E++ +P
Sbjct: 260 VAHKVTAALGGRGLFGVELFVR--GDDVWFSEVSPRP 294


>gi|229086451|ref|ZP_04218623.1| Carbamoyl-phosphate synthase large chain [Bacillus cereus Rock3-44]
 gi|228696768|gb|EEL49581.1| Carbamoyl-phosphate synthase large chain [Bacillus cereus Rock3-44]
          Length = 1016

 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 26/221 (11%), Positives = 80/221 (36%), Gaps = 20/221 (9%)

Query: 68  VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLIS 125
           + A LE   +    + +     + D+ + +  ++  G+P             +     I 
Sbjct: 588 LAAKLEAHGVKILGTSLEDLDRAEDRDKFEAALTQLGIPQPVGKTATTVEQAVAIADKIG 647

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            P +++P        + ++ + + +   +  +   +    +LI++Y+ G E+    + D 
Sbjct: 648 YPVLVRPSYVLGGRAMEIVYRQEELLHYMKNAVKVHADHPVLIDRYMVGKEIEVDAISDG 707

Query: 186 S---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCR 241
               +      + ++  +S        +S  V P + +   + +++        + +   
Sbjct: 708 ENVFIPGIMEHIERAGVHS-------GDSIGVYPPQSLSETLKEQIIEHTIALGKGLNIV 760

Query: 242 GISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277
           G+    F+      +V+ +E+N       P ++ ++  P  
Sbjct: 761 GLLNIQFVV--FEDQVYVIEVNPRASRTVPFLSKITGVPMA 799



 Score = 64.8 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 41/260 (15%), Positives = 96/260 (36%), Gaps = 13/260 (5%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMR 95
             V  ++   +PD     L G  G +  V+     IL+   +    + + A   + D+  
Sbjct: 18  EFVSRIIRKERPDAILPTLGGQTGLNMAVELAKSGILDECGVEILGTKLSAIEQAEDRDL 77

Query: 96  SKQVVSSCGVPVCPSILVNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153
            + ++     P+  S +++      +    I  P +++P       G  +   ++ +   
Sbjct: 78  FRTLMQELNEPIPSSTIIHTLEEAHEFVKEIGYPVIVRPAFTMGGTGGGICSNEEELIEI 137

Query: 154 LLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212
           +      +   Q L+E+ + G  E+   VM D++ +   I V   +       ++  +  
Sbjct: 138 VSGGLKHSPVTQCLLEKSIAGCKEIEYEVMRDSNDNA--IVVCNMENIDPVGVHTGDSIV 195

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
                 +    Y+ ++  +    +A+G  G        DP S + + +E+N  P ++  S
Sbjct: 196 VAPSQTLSDREYQMLRNTSLRIIRALGIEGGCNVQLALDPHSFQYYVIEVN--PRVSRSS 253

Query: 273 IFPEMAAYAGYSFRELLLWM 292
                +   GY   +L   +
Sbjct: 254 --ALASKATGYPIAKLAAKI 271


>gi|215488563|ref|YP_002330994.1| acetyl-CoA carboxylase biotin carboxylase subunit [Escherichia coli
           O127:H6 str. E2348/69]
 gi|215266635|emb|CAS11074.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli O127:H6 str. E2348/69]
          Length = 449

 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 80/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         L  DK+ +   +   GVP  P    
Sbjct: 77  AIHPGYGFLSENANFAEQVERSGFIFIGPKAETIRLMGDKVSAIAAMKKAGVPCVPGSDG 136

Query: 112 -LVNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
            L +    +      I  P +IK   GG   G+ V++ D  +   +     ++ +    D
Sbjct: 137 PLGDDMDKNRAIAKRIGYPVIIKASGGGGGRGMRVVRGDAELAQSICMTRAEAKAAFSND 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+Y++    +   V+ D   +   +A           K          PA  I  +
Sbjct: 197 MVYMEKYLENPRHVEIQVLADGQGNAIYLAERDCSMQRRHQK-----VVEEAPAPGITPE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + + +      A   IG RG    +FLF   + + +++E+N 
Sbjct: 252 LRRYIGERCAKACVDIGYRGAGTFEFLF--ENGEFYFIEMNT 291


>gi|167837953|ref|ZP_02464812.1| acetyl-CoA carboxylase biotin carboxylase subunit [Burkholderia
           thailandensis MSMB43]
          Length = 455

 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 35/222 (15%), Positives = 78/222 (35%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         +  DK+ +KQ +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAERVEQSGFTFIGPRPDTIRMMGDKVTAKQTMIRTGVPCVPGSDG 136

Query: 112 ---LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
                 +  +     I  P +IK   GG   G+ V+  + ++   +     ++       
Sbjct: 137 ALPDDPKEIVKIARSIGYPVIIKAAGGGGGRGMRVVHTEAALVNAVNMTREEAGRAFGNP 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
           Q+ +E++++    +   V+ D+  +   +            K          PA  I   
Sbjct: 197 QVYMEKFLENPRHIEIQVLSDSHKNAVWLGERDCSMQRRHQK-----VIEEAPAPGIARR 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +   +      A + +G  G    +FL+   + + +++E+N 
Sbjct: 252 LIDRIGDRCADACKKMGYLGAGTFEFLY--ENNEFYFIEMNT 291


>gi|148653861|ref|YP_001280954.1| carbamoyl-phosphate synthase L chain, ATP-binding [Psychrobacter
           sp. PRwf-1]
 gi|148572945|gb|ABQ95004.1| 3-methylcrotonoyl-CoA carboxylase, alpha subunit [Psychrobacter sp.
           PRwf-1]
          Length = 700

 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 42/228 (18%), Positives = 80/228 (35%), Gaps = 25/228 (10%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H  +G   E+       E   I +      A      K  SKQ++ + GVP+ P    
Sbjct: 77  AIHPGYGFLSENASFAKACEEAGIVFIGPSAAAITSMGLKAESKQLMETAGVPLIPGYHG 136

Query: 113 ---VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
                 F +     I  P +IK   GG   G+ ++++ +     L             D 
Sbjct: 137 SNQDPEFLLQQADRIGYPLLIKASSGGGGKGMRLVERREDFISLLDSCRREAITSFGNDA 196

Query: 166 LLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDI 223
           +LIE+Y ++   +   V GD+  +               ++          PA  +   +
Sbjct: 197 VLIEKYALNPRHIEIQVFGDSHGNYV-----HLFERDCSVQRRHQKVLEEAPAPNVDEAM 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFD---PLSRKV----FWLEINV 264
            + +   A  A +A+   G    +F+ +       KV    +++E+N 
Sbjct: 252 RQAMGTAAINAARAVDYVGAGTVEFIVEQRPSADGKVEMNFYFMEMNT 299


>gi|24373459|ref|NP_717502.1| acetyl-CoA carboxylase, biotin carboxylase, putative [Shewanella
           oneidensis MR-1]
 gi|24347747|gb|AAN54946.1|AE015632_12 acetyl-CoA carboxylase, biotin carboxylase, putative [Shewanella
           oneidensis MR-1]
          Length = 694

 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 41/216 (18%), Positives = 80/216 (37%), Gaps = 16/216 (7%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
           +G   E+       E   I +   G  A      K  +K ++++  VP+ P    +  T 
Sbjct: 92  YGFLSENADFARKCEAAGIVFVGPGSDAIDAMGSKSAAKAIMTAAQVPLVPGYHGDDQTD 151

Query: 119 ----DSQHLISPPYVIKPLKGGSSLGIIVIKKD----QSIPLDLLQSSSWNHGDQLLIEQ 170
                    I  P +IK   GG   G+ +++ +     +I     +++S    D+LL+E+
Sbjct: 152 ATLKAEALKIGFPMLIKAAYGGGGKGMRIVEHEGEIMDAINSARREAASSFGNDKLLMER 211

Query: 171 YVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQ 228
           Y+     +   V  D   +   ++           K          PA  +  ++  ++ 
Sbjct: 212 YLRQPRHVEVQVFADTFGNAIYLSDRDCSIQRRHQK-----VVEEAPAPGLSDELRAQMG 266

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             A  A +AI   G    +FL D      +++E+N 
Sbjct: 267 EAAVAAAKAIDYVGAGTIEFLLDT-DNSFYFMEMNT 301


>gi|94986169|ref|YP_605533.1| carbamoyl phosphate synthase large subunit [Deinococcus
           geothermalis DSM 11300]
 gi|167006439|sp|Q1IWM0|CARB_DEIGD RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|94556450|gb|ABF46364.1| carbamoyl-phosphate synthase, large subunit [Deinococcus
           geothermalis DSM 11300]
          Length = 1029

 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 52/289 (17%), Positives = 100/289 (34%), Gaps = 38/289 (13%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI---------DVD------------RSVGLV 45
           G ++E + S   G     AL+  G++V  +         D D              V  V
Sbjct: 21  GQAAEFDYS---GTQALKALKKEGYRVVLVNSNPATIMTDPDLADATYLEPLTPEFVRKV 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   +PD     L G    +  ++      L+   +    +   A     D+   +  + 
Sbjct: 78  IEKERPDALLPTLGGQTALNLAMELNANGTLKEFGVELIGANAEAIHKGEDREAFQAAMK 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             GV      +V+     ++ Q  I  P VI+P       G  +    +           
Sbjct: 138 KIGVETARGKMVHSLEEAIEYQKEIGLPIVIRPSFTLGGTGGGIAHTYEDFLKITEGGLR 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPA 217
            +    +L+E+ + G  E    VM D +  V  I   ++    ++       +S  V PA
Sbjct: 198 DSPVHSVLLEESILGWKEYELEVMRDHADTVVIITSIEN----FDPMGVHTGDSITVAPA 253

Query: 218 K-IPLDIYKEVQRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
           + +    Y+ ++  +    + IG   G S   F  +P + +V  +E+N 
Sbjct: 254 QTLSDVEYQRLRDYSLAIIREIGVDTGGSNIQFAVNPENGRVIVIEMNP 302



 Score = 54.7 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 35/265 (13%), Positives = 89/265 (33%), Gaps = 32/265 (12%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVL-HGNFGEDGLVQAI--- 71
           AL++AG++   I         D D +  L    L  +   N++ H      G++  +   
Sbjct: 580 ALQEAGYETIMINSNPETVSTDYDTADRLYFEPLTFEDVMNIVEHEKP--VGVIVQLGGQ 637

Query: 72  --------LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTMDSQ 121
                   L     P   +       + D+     +    G+P     +        +  
Sbjct: 638 TPLKLAKRLAEAGAPIIGTLPETIHQAEDRASFNALCERLGLPQPRGKVAQTPEQARELA 697

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS-SSWNHGDQLLIEQYVDGI-ELTC 179
             +  P +++P        +  ++  + +   L +  ++      +L++Q+++G  EL  
Sbjct: 698 AELGFPLMVRPSYVLGGRAMRTVRSMEELTTYLDEVYAAVEGQPSILLDQFLEGALELDV 757

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
             + D    V    +   +       +S  ++  + P  +  ++ + V+         +G
Sbjct: 758 DTLCDGERAVVAGIMEHVEAAGV---HSGDSACVLPPVTLSPELLERVKADTERLALELG 814

Query: 240 CRGISRSDFLFDPLSRKVFWLEINV 264
            +G+   +  +       + LE N 
Sbjct: 815 VKGL--LNVQWAVKDGVAYILEANP 837


>gi|313669076|ref|YP_004049360.1| carbamoyl phosphate synthase large subunit [Neisseria lactamica
           ST-640]
 gi|313006538|emb|CBN88002.1| carbamoyl phosphate synthase large subunit [Neisseria lactamica
           020-06]
          Length = 1071

 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 28/192 (14%), Positives = 73/192 (38%), Gaps = 8/192 (4%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYVIKPL 133
            +    +   +   + D+ R ++V++  G+   P+ + +           I  P V++P 
Sbjct: 652 GVNIIGTSADSIDAAEDRERFQKVLNDLGLRQPPNRIAHNEEEALVKAEEIGYPLVVRPS 711

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEI 192
                  + ++   +++   + ++   +    +L++ ++ + IE+    + D    V   
Sbjct: 712 YVLGGRAMQIVHSAEALQKYMREAVQVSEDSPVLLDFFLNNAIEVDVDCVSDGKDVVIGG 771

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            +   +       +S  +   + P  +  +I  E++R       A+G  G+    F    
Sbjct: 772 IMQHVEQAGI---HSGDSGCSLPPYSLSEEIQDEIRRQTKAMAYALGVIGLMNVQFAV-- 826

Query: 253 LSRKVFWLEINV 264
               VF LE+N 
Sbjct: 827 QDGVVFVLEVNP 838



 Score = 65.9 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 50/278 (17%), Positives = 101/278 (36%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +              DV        ++V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYKVILVNSNPATIMTDPEMADVTYIEPIMWQTVEKIIAKERPDAILP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      +L    +    +   A   + D+ R K+ +   G+    S +
Sbjct: 89  TMGGQTALNCALDLARNGVLAKYNVELIGATEDAIDKAEDRGRFKEAMEKIGLSCPKSFV 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     + +Q  +  P +I+P       G  +            +    +   +LLIEQ
Sbjct: 149 CHTMNEALAAQEQVGFPTLIRPSFTMGGSGGGIAYNKDEFLAICERGFDASPTHELLIEQ 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            V G  E    V+ D + +   I   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SVLGWKEYEMEVVRDKNDNCIIICSIEN----FDPMGVHTGDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RNASLAVLREIGVDTGGSNVQFAVNPENGEMIVIEMNP 302


>gi|237722971|ref|ZP_04553452.1| biotin carboxylase [Bacteroides sp. 2_2_4]
 gi|260173725|ref|ZP_05760137.1| biotin carboxylase [Bacteroides sp. D2]
 gi|299146663|ref|ZP_07039731.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Bacteroides sp.
           3_1_23]
 gi|315921990|ref|ZP_07918230.1| biotin carboxylase [Bacteroides sp. D2]
 gi|229447493|gb|EEO53284.1| biotin carboxylase [Bacteroides sp. 2_2_4]
 gi|298517154|gb|EFI41035.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Bacteroides sp.
           3_1_23]
 gi|313695865|gb|EFS32700.1| biotin carboxylase [Bacteroides sp. D2]
          Length = 503

 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 84/220 (38%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       E   + +        +    K  +++++   G+P+ P    
Sbjct: 76  AIHPGYGFLSENADFARRCEEEGVIFIGPSADIISKMGIKTEARKIMREAGLPIVPGTET 135

Query: 114 NRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN----HGDQ 165
               +D      + +  P ++K L GG   G+ +++ ++ +   L  S S        D 
Sbjct: 136 PVQGIDEVKKVANEVGYPIMLKALAGGGGKGMRLVRTEEEVETALRLSQSEAGTSFGNDA 195

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+Y++    +   +MGD   +V  +   +        K             +  +  
Sbjct: 196 VYIEKYIENPHHIEVQIMGDKYGNVVHLYERECSIQRRNQK----VIEESPSPFVKEETR 251

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K++ ++A  A + IG       +F+ D   +  ++LE+N 
Sbjct: 252 KKMLKVAVEACKKIGYYSAGTLEFMMDK-DQNFYFLEMNT 290


>gi|227832418|ref|YP_002834125.1| acyl-CoA carboxylase, alpha subunit [Corynebacterium aurimucosum
           ATCC 700975]
 gi|262183721|ref|ZP_06043142.1| acyl-CoA carboxylase, alpha subunit [Corynebacterium aurimucosum
           ATCC 700975]
 gi|227453434|gb|ACP32187.1| acyl-CoA carboxylase, alpha subunit [Corynebacterium aurimucosum
           ATCC 700975]
          Length = 599

 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 33/221 (14%), Positives = 74/221 (33%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      +    + +      +  L  DK+ +++V    G P+ P    
Sbjct: 77  AIHPGYGFLSENADFARTVAEAGLTWIGPSPESIELLGDKIAARRVAEEVGAPLAPGTSD 136

Query: 114 NRFTMDSQHLI----SPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGD 164
                            P  IK   GG   G+ V++  + I             ++    
Sbjct: 137 PIDDWQEARAFAEEHGLPIAIKAAYGGGGRGLKVVENLEDIEAAFNSAGREAKEAFGRA- 195

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           +  +E+++     +   ++ D   +V   AV  +   S + ++  L      PA +  + 
Sbjct: 196 ECYVEKFLTHPRHVEAQILADTHGNV---AVLGTRDCSTQRRFQKLIEEAPAPA-LSDEQ 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              +   A      +G  G    +++       + +LE+N 
Sbjct: 252 RTGIHEGARAICAKVGYTGAGTVEYIVSE-DGTISFLEVNT 291


>gi|261401908|ref|ZP_05988033.1| carbamoyl-phosphate synthase, large subunit [Neisseria lactamica
           ATCC 23970]
 gi|269207923|gb|EEZ74378.1| carbamoyl-phosphate synthase, large subunit [Neisseria lactamica
           ATCC 23970]
          Length = 1071

 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 28/192 (14%), Positives = 73/192 (38%), Gaps = 8/192 (4%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYVIKPL 133
            +    +   +   + D+ R ++V++  G+   P+ + +           I  P V++P 
Sbjct: 652 GVNIIGTSADSIDAAEDRERFQKVLNDLGLRQPPNRIAHNEEEALVKAEEIGYPLVVRPS 711

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEI 192
                  + ++   +++   + ++   +    +L++ ++ + IE+    + D    V   
Sbjct: 712 YVLGGRAMQIVHSAEALQKYMREAVQVSEDSPVLLDFFLNNAIEVDVDCVSDGKDVVIGG 771

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            +   +       +S  +   + P  +  +I  E++R       A+G  G+    F    
Sbjct: 772 IMQHVEQAGI---HSGDSGCSLPPYSLSEEIQDEIRRQTKAMAYALGVIGLMNVQFAV-- 826

Query: 253 LSRKVFWLEINV 264
               VF LE+N 
Sbjct: 827 QDGVVFVLEVNP 838



 Score = 65.9 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 50/278 (17%), Positives = 101/278 (36%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +              DV        ++V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYKVILVNSNPATIMTDPEMADVTYIEPIMWQTVEKIIAKERPDAILP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      +L    +    +   A   + D+ R K+ +   G+    S +
Sbjct: 89  TMGGQTALNCALDLARNGVLAKYNVELIGATEDAIDKAEDRGRFKEAMEKIGLSCPKSFV 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     + +Q  +  P +I+P       G  +            +    +   +LLIEQ
Sbjct: 149 CHTMNEALAAQEQVGFPTLIRPSFTMGGSGGGIAYNKDEFLAICERGFDASPTHELLIEQ 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            V G  E    V+ D + +   I   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SVLGWKEYEMEVVRDKNDNCIIICSIEN----FDPMGVHTGDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RNASLAVLREIGVDTGGSNVQFAVNPENGEMIVIEMNP 302


>gi|148243627|ref|YP_001228784.1| phosphoribosylglycinamide formyltransferase 2 [Synechococcus sp.
           RCC307]
 gi|172047884|sp|A5GX22|PURT_SYNR3 RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|147851937|emb|CAK29431.1| Formate-dependent phosphoribosyl glycinamide formyl transferase
           [Synechococcus sp. RCC307]
          Length = 393

 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 40/244 (16%), Positives = 85/244 (34%), Gaps = 26/244 (10%)

Query: 33  VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAI--LELLEIPYTHSGILASALS 90
           V  +    ++  V+   +P L    +         V A+  LE   I        A+A++
Sbjct: 53  VIPMTDAEALKQVIREHQPALVIPEIEAL-----AVDALAELEAEGITVI-PTARATAIT 106

Query: 91  MDKMRSKQVVSS-CGVPVCPSILVNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVIKKD 147
           M++ R + + +   G+        +       +   +  P V+KP+   S  G  V    
Sbjct: 107 MNRDRIRDLAAGELGLRTARFGYASSAEELSSAAEPLGWPVVVKPVMSSSGKGQSVATNP 166

Query: 148 QSIPLD--LLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKS--DFYSY 202
           + +          +      +++E+++    E+T   +                 +   Y
Sbjct: 167 EELQQAWTAATQGARGSASLVIVEEFLRFEQEITLLTVRQKDGPTLFCPPIGHIQERGDY 226

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
           +  +         PA++      E QR+A     A+G  GI   +F     S +V + E+
Sbjct: 227 QCSW--------QPAELQQSQLLEAQRMARQVTDALGGAGIFGVEFFI--ASGEVIFSEL 276

Query: 263 NVQP 266
           + +P
Sbjct: 277 SPRP 280


>gi|194440190|ref|ZP_03072233.1| acetyl-CoA carboxylase, biotin carboxylase [Escherichia coli 101-1]
 gi|194420879|gb|EDX36923.1| acetyl-CoA carboxylase, biotin carboxylase [Escherichia coli 101-1]
 gi|323970329|gb|EGB65599.1| acetyl-CoA carboxylase [Escherichia coli TA007]
          Length = 449

 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 80/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         L  DK+ +   +   GVP  P    
Sbjct: 77  AIHPGYGFLSENANFAEQVERSGFIFIGPKAETIRLMGDKVSAIAAMKKAGVPCVPGSDG 136

Query: 112 -LVNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
            L +    +      I  P +IK   GG   G+ V++ D  +   +     ++ +    D
Sbjct: 137 PLGDDMDKNRAIAKRIGYPVIIKASGGGGGRGMRVVRGDAELAQSISMTRAEAKAAFSND 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+Y++    +   V+ D   +   +A           K          PA  I  +
Sbjct: 197 MVYMEKYLENPRHVEIQVLADGQGNAIYLAERDCSMQRRHQK-----VVEEAPAPGITPE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + + +      A   IG RG    +FLF   + + +++E+N 
Sbjct: 252 LRRYIGERCAKACVDIGYRGAGTFEFLF--ENGEFYFIEMNT 291


>gi|16131144|ref|NP_417722.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli str. K-12 substr. MG1655]
 gi|82545515|ref|YP_409462.1| acetyl-CoA carboxylase biotin carboxylase subunit [Shigella boydii
           Sb227]
 gi|82778565|ref|YP_404914.1| acetyl-CoA carboxylase biotin carboxylase subunit [Shigella
           dysenteriae Sd197]
 gi|89110016|ref|AP_003796.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli str. K-12 substr. W3110]
 gi|157157399|ref|YP_001464729.1| acetyl-CoA carboxylase biotin carboxylase subunit [Escherichia coli
           E24377A]
 gi|157162736|ref|YP_001460054.1| acetyl-CoA carboxylase biotin carboxylase subunit [Escherichia coli
           HS]
 gi|170018501|ref|YP_001723455.1| acetyl-CoA carboxylase biotin carboxylase subunit [Escherichia coli
           ATCC 8739]
 gi|170082784|ref|YP_001732104.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli str. K-12 substr. DH10B]
 gi|170683611|ref|YP_001745527.1| acetyl-CoA carboxylase biotin carboxylase subunit [Escherichia coli
           SMS-3-5]
 gi|187733602|ref|YP_001881646.1| acetyl-CoA carboxylase biotin carboxylase subunit [Shigella boydii
           CDC 3083-94]
 gi|188493388|ref|ZP_03000658.1| acetyl-CoA carboxylase, biotin carboxylase [Escherichia coli 53638]
 gi|194435434|ref|ZP_03067613.1| acetyl-CoA carboxylase, biotin carboxylase [Shigella dysenteriae
           1012]
 gi|218702021|ref|YP_002409650.1| acetyl-CoA carboxylase biotin carboxylase subunit [Escherichia coli
           IAI39]
 gi|218706870|ref|YP_002414389.1| acetyl-CoA carboxylase biotin carboxylase subunit [Escherichia coli
           UMN026]
 gi|227887973|ref|ZP_04005778.1| acetyl-CoA carboxylase [Escherichia coli 83972]
 gi|238902355|ref|YP_002928151.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli BW2952]
 gi|253771914|ref|YP_003034745.1| acetyl-CoA carboxylase biotin carboxylase subunit [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254163191|ref|YP_003046299.1| acetyl-CoA carboxylase biotin carboxylase subunit [Escherichia coli
           B str. REL606]
 gi|256024170|ref|ZP_05438035.1| acetyl-CoA carboxylase biotin carboxylase subunit [Escherichia sp.
           4_1_40B]
 gi|260857375|ref|YP_003231266.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli O26:H11 str. 11368]
 gi|260869999|ref|YP_003236401.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli O111:H- str. 11128]
 gi|291284623|ref|YP_003501441.1| acetyl CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli O55:H7 str. CB9615]
 gi|293412624|ref|ZP_06655347.1| acetyl-CoA carboxylase [Escherichia coli B354]
 gi|293416680|ref|ZP_06659319.1| acetyl-CoA carboxylase [Escherichia coli B185]
 gi|293449579|ref|ZP_06664000.1| acetyl-CoA carboxylase [Escherichia coli B088]
 gi|298382599|ref|ZP_06992196.1| biotin carboxylase [Escherichia coli FVEC1302]
 gi|300898027|ref|ZP_07116399.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli MS 198-1]
 gi|300904450|ref|ZP_07122296.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli MS 84-1]
 gi|300925999|ref|ZP_07141822.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli MS 182-1]
 gi|300928709|ref|ZP_07144227.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli MS 187-1]
 gi|300937372|ref|ZP_07152208.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli MS 21-1]
 gi|300948340|ref|ZP_07162449.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli MS 116-1]
 gi|300958263|ref|ZP_07170409.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli MS 175-1]
 gi|300991044|ref|ZP_07179465.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli MS 45-1]
 gi|301028286|ref|ZP_07191547.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli MS 196-1]
 gi|301047898|ref|ZP_07194945.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli MS 185-1]
 gi|301304277|ref|ZP_07210391.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli MS 124-1]
 gi|301326304|ref|ZP_07219675.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli MS 78-1]
 gi|301647031|ref|ZP_07246864.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli MS 146-1]
 gi|307139944|ref|ZP_07499300.1| acetyl-CoA carboxylase biotin carboxylase subunit [Escherichia coli
           H736]
 gi|309785581|ref|ZP_07680212.1| acetyl-CoA carboxylase, biotin carboxylase [Shigella dysenteriae
           1617]
 gi|309793835|ref|ZP_07688261.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli MS 145-7]
 gi|312968413|ref|ZP_07782622.1| acetyl-CoA carboxylase, biotin carboxylase [Escherichia coli
           2362-75]
 gi|312972475|ref|ZP_07786649.1| acetyl-CoA carboxylase, biotin carboxylase [Escherichia coli
           1827-70]
 gi|331643955|ref|ZP_08345086.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli H736]
 gi|331654853|ref|ZP_08355853.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli M718]
 gi|331664864|ref|ZP_08365769.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli TA143]
 gi|331674773|ref|ZP_08375532.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli TA280]
 gi|331684896|ref|ZP_08385488.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli H299]
 gi|461457|sp|P24182|ACCC_ECOLI RecName: Full=Biotin carboxylase; AltName: Full=Acetyl-CoA
           carboxylase subunit A; Short=ACC
 gi|1127198|pdb|1BNC|A Chain A, Three-Dimensional Structure Of The Biotin Carboxylase
           Subunit Of Acetyl-Coa Carboxylase
 gi|1127199|pdb|1BNC|B Chain B, Three-Dimensional Structure Of The Biotin Carboxylase
           Subunit Of Acetyl-Coa Carboxylase
 gi|9257123|pdb|1DV1|A Chain A, Structure Of Biotin Carboxylase (Apo)
 gi|9257124|pdb|1DV1|B Chain B, Structure Of Biotin Carboxylase (Apo)
 gi|198443032|pdb|2J9G|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
           Complex With Amppnp And Adp
 gi|198443033|pdb|2J9G|B Chain B, Crystal Structure Of Biotin Carboxylase From E. Coli In
           Complex With Amppnp And Adp
 gi|198443114|pdb|2VR1|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
           Complex With Atp Analog, Adpcf2p.
 gi|198443115|pdb|2VR1|B Chain B, Crystal Structure Of Biotin Carboxylase From E. Coli In
           Complex With Atp Analog, Adpcf2p.
 gi|220702200|pdb|2V58|A Chain A, Crystal Structure Of Biotin Carboxylase From E.Coli In
           Complex With Potent Inhibitor 1
 gi|220702201|pdb|2V58|B Chain B, Crystal Structure Of Biotin Carboxylase From E.Coli In
           Complex With Potent Inhibitor 1
 gi|220702202|pdb|2V59|A Chain A, Crystal Structure Of Biotin Carboxylase From E.Coli In
           Complex With Potent Inhibitor 2
 gi|220702203|pdb|2V59|B Chain B, Crystal Structure Of Biotin Carboxylase From E.Coli In
           Complex With Potent Inhibitor 2
 gi|220702204|pdb|2V5A|A Chain A, Crystal Structure Of Biotin Carboxylase From E.Coli In
           Complex With Potent Inhibitor 3
 gi|220702205|pdb|2V5A|B Chain B, Crystal Structure Of Biotin Carboxylase From E.Coli In
           Complex With Potent Inhibitor 3
 gi|237823461|pdb|2W6M|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
           Complex With Amino-Oxazole Fragment Series
 gi|237823462|pdb|2W6M|B Chain B, Crystal Structure Of Biotin Carboxylase From E. Coli In
           Complex With Amino-Oxazole Fragment Series
 gi|237823463|pdb|2W6N|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
           Complex With Amino-Oxazole Fragment Series
 gi|237823464|pdb|2W6N|B Chain B, Crystal Structure Of Biotin Carboxylase From E. Coli In
           Complex With Amino-Oxazole Fragment Series
 gi|237823465|pdb|2W6O|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
           Complex With 4-Amino-7,7-Dimethyl-7,8-Dihydro-
           Quinazolinone Fragment
 gi|237823466|pdb|2W6O|C Chain C, Crystal Structure Of Biotin Carboxylase From E. Coli In
           Complex With 4-Amino-7,7-Dimethyl-7,8-Dihydro-
           Quinazolinone Fragment
 gi|237823467|pdb|2W6P|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
           Complex With 5-Methyl-6-Phenyl-Quinazoline-2,4-Diamine
 gi|237823468|pdb|2W6P|B Chain B, Crystal Structure Of Biotin Carboxylase From E. Coli In
           Complex With 5-Methyl-6-Phenyl-Quinazoline-2,4-Diamine
 gi|237823469|pdb|2W6Q|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
           Complex With The Triazine-2,4-Diamine Fragment
 gi|237823470|pdb|2W6Q|B Chain B, Crystal Structure Of Biotin Carboxylase From E. Coli In
           Complex With The Triazine-2,4-Diamine Fragment
 gi|237823471|pdb|2W6Z|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
           Complex With The 3-(3-Methyl-But-2-Enyl)-3h-Purin-6-
           Ylamine Fragment
 gi|237823472|pdb|2W6Z|B Chain B, Crystal Structure Of Biotin Carboxylase From E. Coli In
           Complex With The 3-(3-Methyl-But-2-Enyl)-3h-Purin-6-
           Ylamine Fragment
 gi|237823473|pdb|2W70|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
           Complex With The Amino-Thiazole-Pyrimidine Fragment
 gi|237823474|pdb|2W70|B Chain B, Crystal Structure Of Biotin Carboxylase From E. Coli In
           Complex With The Amino-Thiazole-Pyrimidine Fragment
 gi|237823475|pdb|2W71|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
           Complex With The Imidazole-Pyrimidine Inhibitor
 gi|237823476|pdb|2W71|C Chain C, Crystal Structure Of Biotin Carboxylase From E. Coli In
           Complex With The Imidazole-Pyrimidine Inhibitor
 gi|145175|gb|AAA23409.1| biotin carboxylase [Escherichia coli]
 gi|145893|gb|AAA23746.1| biotin carboxylase [Escherichia coli]
 gi|606196|gb|AAA58059.1| biotin carboxylase [Escherichia coli str. K-12 substr. MG1655]
 gi|1789654|gb|AAC76288.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli str. K-12 substr. MG1655]
 gi|81242713|gb|ABB63423.1| acetyl CoA carboxylase, biotin carboxylase subunit [Shigella
           dysenteriae Sd197]
 gi|81246926|gb|ABB67634.1| acetyl CoA carboxylase, biotin carboxylase subunit [Shigella boydii
           Sb227]
 gi|85676047|dbj|BAE77297.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli str. K12 substr. W3110]
 gi|157068416|gb|ABV07671.1| acetyl-CoA carboxylase, biotin carboxylase [Escherichia coli HS]
 gi|157079429|gb|ABV19137.1| acetyl-CoA carboxylase, biotin carboxylase [Escherichia coli
           E24377A]
 gi|169753429|gb|ACA76128.1| acetyl-CoA carboxylase, biotin carboxylase [Escherichia coli ATCC
           8739]
 gi|169890619|gb|ACB04326.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli str. K-12 substr. DH10B]
 gi|170521329|gb|ACB19507.1| acetyl-CoA carboxylase, biotin carboxylase [Escherichia coli
           SMS-3-5]
 gi|187430594|gb|ACD09868.1| acetyl-CoA carboxylase, biotin carboxylase [Shigella boydii CDC
           3083-94]
 gi|188488587|gb|EDU63690.1| acetyl-CoA carboxylase, biotin carboxylase [Escherichia coli 53638]
 gi|194416325|gb|EDX32515.1| acetyl-CoA carboxylase, biotin carboxylase [Shigella dysenteriae
           1012]
 gi|209757578|gb|ACI77101.1| acetyl CoA carboxylase biotin carboxylase subunit [Escherichia
           coli]
 gi|209757584|gb|ACI77104.1| acetyl CoA carboxylase biotin carboxylase subunit [Escherichia
           coli]
 gi|218372007|emb|CAR19863.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli IAI39]
 gi|218433967|emb|CAR14884.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli UMN026]
 gi|222034964|emb|CAP77707.1| biotin carboxylase [Escherichia coli LF82]
 gi|227835369|gb|EEJ45835.1| acetyl-CoA carboxylase [Escherichia coli 83972]
 gi|238859911|gb|ACR61909.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli BW2952]
 gi|242378790|emb|CAQ33582.1| accC, subunit of biotin carboxylase and acetyl-CoA carboxylase
           [Escherichia coli BL21(DE3)]
 gi|253322958|gb|ACT27560.1| acetyl-CoA carboxylase, biotin carboxylase [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253975092|gb|ACT40763.1| acetyl-CoA carboxylase [Escherichia coli B str. REL606]
 gi|253979248|gb|ACT44918.1| acetyl-CoA carboxylase [Escherichia coli BL21(DE3)]
 gi|257756024|dbj|BAI27526.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli O26:H11 str. 11368]
 gi|257766355|dbj|BAI37850.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli O111:H- str. 11128]
 gi|260447717|gb|ACX38139.1| acetyl-CoA carboxylase, biotin carboxylase [Escherichia coli DH1]
 gi|262176903|gb|ACY27506.1| acetyl-CoA carboxylase [Escherichia coli LW1655F+]
 gi|284923270|emb|CBG36364.1| biotin carboxylase (acetyl-CoA carboxylase subunit A) [Escherichia
           coli 042]
 gi|290764496|gb|ADD58457.1| Acetyl CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli O55:H7 str. CB9615]
 gi|291322669|gb|EFE62098.1| acetyl-CoA carboxylase [Escherichia coli B088]
 gi|291432036|gb|EFF05019.1| acetyl-CoA carboxylase [Escherichia coli B185]
 gi|291469395|gb|EFF11886.1| acetyl-CoA carboxylase [Escherichia coli B354]
 gi|298277739|gb|EFI19255.1| biotin carboxylase [Escherichia coli FVEC1302]
 gi|299878663|gb|EFI86874.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli MS 196-1]
 gi|300300241|gb|EFJ56626.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli MS 185-1]
 gi|300315050|gb|EFJ64834.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli MS 175-1]
 gi|300358277|gb|EFJ74147.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli MS 198-1]
 gi|300403612|gb|EFJ87150.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli MS 84-1]
 gi|300406965|gb|EFJ90503.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli MS 45-1]
 gi|300417943|gb|EFK01254.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli MS 182-1]
 gi|300452153|gb|EFK15773.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli MS 116-1]
 gi|300457591|gb|EFK21084.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli MS 21-1]
 gi|300463298|gb|EFK26791.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli MS 187-1]
 gi|300840403|gb|EFK68163.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli MS 124-1]
 gi|300846970|gb|EFK74730.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli MS 78-1]
 gi|301074803|gb|EFK89609.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli MS 146-1]
 gi|307555342|gb|ADN48117.1| biotin carboxylase [Escherichia coli ABU 83972]
 gi|308122792|gb|EFO60054.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli MS 145-7]
 gi|308926701|gb|EFP72177.1| acetyl-CoA carboxylase, biotin carboxylase [Shigella dysenteriae
           1617]
 gi|309703675|emb|CBJ03016.1| biotin carboxylase (acetyl-CoA carboxylase subunit A) [Escherichia
           coli ETEC H10407]
 gi|310334852|gb|EFQ01057.1| acetyl-CoA carboxylase, biotin carboxylase [Escherichia coli
           1827-70]
 gi|312286631|gb|EFR14542.1| acetyl-CoA carboxylase, biotin carboxylase [Escherichia coli
           2362-75]
 gi|312947805|gb|ADR28632.1| acetyl-CoA carboxylase biotin carboxylase subunit [Escherichia coli
           O83:H1 str. NRG 857C]
 gi|315137839|dbj|BAJ44998.1| acetyl CoA carboxylase [Escherichia coli DH1]
 gi|315257182|gb|EFU37150.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli MS 85-1]
 gi|315294798|gb|EFU54141.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli MS 153-1]
 gi|315617065|gb|EFU97675.1| acetyl-CoA carboxylase, biotin carboxylase [Escherichia coli 3431]
 gi|320175948|gb|EFW51024.1| Biotin carboxylase of acetyl-CoA carboxylase [Shigella dysenteriae
           CDC 74-1112]
 gi|320181526|gb|EFW56444.1| Biotin carboxylase of acetyl-CoA carboxylase [Shigella boydii ATCC
           9905]
 gi|320184024|gb|EFW58846.1| Biotin carboxylase of acetyl-CoA carboxylase [Shigella flexneri CDC
           796-83]
 gi|320194732|gb|EFW69362.1| Biotin carboxylase of acetyl-CoA carboxylase [Escherichia coli
           WV_060327]
 gi|320202165|gb|EFW76740.1| Biotin carboxylase of acetyl-CoA carboxylase [Escherichia coli
           EC4100B]
 gi|320645618|gb|EFX14627.1| acetyl-CoA carboxylase biotin carboxylase subunit [Escherichia coli
           O157:H- str. 493-89]
 gi|320650928|gb|EFX19385.1| acetyl-CoA carboxylase biotin carboxylase subunit [Escherichia coli
           O157:H- str. H 2687]
 gi|320656309|gb|EFX24221.1| acetyl-CoA carboxylase biotin carboxylase subunit [Escherichia coli
           O55:H7 str. 3256-97 TW 07815]
 gi|320661999|gb|EFX29407.1| acetyl-CoA carboxylase biotin carboxylase subunit [Escherichia coli
           O55:H7 str. USDA 5905]
 gi|320666833|gb|EFX33812.1| acetyl-CoA carboxylase biotin carboxylase subunit [Escherichia coli
           O157:H7 str. LSU-61]
 gi|323154466|gb|EFZ40667.1| acetyl-CoA carboxylase, biotin carboxylase [Escherichia coli
           EPECa14]
 gi|323165217|gb|EFZ51007.1| acetyl-CoA carboxylase, biotin carboxylase [Shigella sonnei 53G]
 gi|323178574|gb|EFZ64150.1| acetyl-CoA carboxylase, biotin carboxylase [Escherichia coli 1180]
 gi|323189132|gb|EFZ74416.1| acetyl-CoA carboxylase, biotin carboxylase [Escherichia coli
           RN587/1]
 gi|323936261|gb|EGB32553.1| acetyl-CoA carboxylase [Escherichia coli E1520]
 gi|323941651|gb|EGB37830.1| acetyl-CoA carboxylase [Escherichia coli E482]
 gi|323946897|gb|EGB42913.1| acetyl-CoA carboxylase [Escherichia coli H120]
 gi|323961096|gb|EGB56710.1| acetyl-CoA carboxylase [Escherichia coli H489]
 gi|324009076|gb|EGB78295.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli MS 57-2]
 gi|331037426|gb|EGI09650.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli H736]
 gi|331048235|gb|EGI20312.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli M718]
 gi|331058112|gb|EGI30094.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli TA143]
 gi|331068212|gb|EGI39608.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli TA280]
 gi|331078511|gb|EGI49717.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli H299]
 gi|332086487|gb|EGI91634.1| acetyl-CoA carboxylase, biotin carboxylase [Shigella dysenteriae
           155-74]
 gi|332087247|gb|EGI92380.1| acetyl-CoA carboxylase, biotin carboxylase [Shigella boydii
           5216-82]
 gi|332090910|gb|EGI96001.1| acetyl-CoA carboxylase, biotin carboxylase [Shigella boydii
           3594-74]
 gi|332345211|gb|AEE58545.1| acetyl-CoA carboxylase, biotin carboxylase AccC [Escherichia coli
           UMNK88]
 gi|332999333|gb|EGK18919.1| acetyl-CoA carboxylase, biotin carboxylase [Shigella flexneri
           K-272]
 gi|333014702|gb|EGK34048.1| acetyl-CoA carboxylase, biotin carboxylase [Shigella flexneri
           K-227]
          Length = 449

 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 80/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         L  DK+ +   +   GVP  P    
Sbjct: 77  AIHPGYGFLSENANFAEQVERSGFIFIGPKAETIRLMGDKVSAIAAMKKAGVPCVPGSDG 136

Query: 112 -LVNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
            L +    +      I  P +IK   GG   G+ V++ D  +   +     ++ +    D
Sbjct: 137 PLGDDMDKNRAIAKRIGYPVIIKASGGGGGRGMRVVRGDAELAQSISMTRAEAKAAFSND 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+Y++    +   V+ D   +   +A           K          PA  I  +
Sbjct: 197 MVYMEKYLENPRHVEIQVLADGQGNAIYLAERDCSMQRRHQK-----VVEEAPAPGITPE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + + +      A   IG RG    +FLF   + + +++E+N 
Sbjct: 252 LRRYIGERCAKACVDIGYRGAGTFEFLF--ENGEFYFIEMNT 291


>gi|320540424|ref|ZP_08040074.1| putative carbamoyl-phosphate synthase large subunit [Serratia
           symbiotica str. Tucson]
 gi|320029355|gb|EFW11384.1| putative carbamoyl-phosphate synthase large subunit [Serratia
           symbiotica str. Tucson]
          Length = 1074

 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 49/319 (15%), Positives = 108/319 (33%), Gaps = 52/319 (16%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D +              V  ++   +PD    
Sbjct: 29  SGVQACKALREEGYRVILVNSNPATIMTDPETADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +    Q +L    +    +   A   + D+ R    +   G+    S +
Sbjct: 89  TMGGQTALNCALELERQGVLTEFGVTMIGATADAIDKAEDRRRFDMAMKKIGLDTARSGI 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     +     +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHTLEEALAVAAEVGFPCIIRPSFTMGGTGGGIAYNREEFEEICQRGLDLSPTKELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + +   +   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIEN----FDAMGIHTGDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV-----------QPGMTPVSIFP 275
           +  +    + IG   G S   F  +P + ++  +E+N              G        
Sbjct: 265 RNASMAVLREIGVETGGSNVQFSVNPKTGRLIVIEMNPRVSRSSALASKATGF----PIA 320

Query: 276 EMAA--YAGYSFRELLLWM 292
           ++AA    GY+  EL+  +
Sbjct: 321 KVAAKLAVGYTLDELVDDI 339



 Score = 60.9 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 38/198 (19%), Positives = 83/198 (41%), Gaps = 12/198 (6%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           LE   +P   +   A   + D+ R +QVV+  G+    +  V      ++    I  P V
Sbjct: 654 LEAAGMPIIGTSPDAIDRAEDRERFQQVVNRLGLKQPANATVTTVEQAVEQAASIGYPLV 713

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  +  +      + S ++   +L+++++ D +E+    + D    
Sbjct: 714 VRPSYVLGGRAMEIVYDEIDLRRYFQNAVSVSNDAPVLLDRFLNDAVEVDVDAICDGECV 773

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV-QRLAFLAHQAIGCRGISRS 246
           +    +   +    +    S +S   LPA  +  DI   + Q++A LA + +  RG+   
Sbjct: 774 LIGGIMEHIE----QAGVHSGDSACSLPAYTLSKDIQDIMRQQVAKLAFE-LQVRGLMNV 828

Query: 247 DFLFDPLSRKVFWLEINV 264
            F     + KV+ +E+N 
Sbjct: 829 QFAV--KNHKVYLIEVNP 844


>gi|237715071|ref|ZP_04545552.1| biotin carboxylase [Bacteroides sp. D1]
 gi|262408980|ref|ZP_06085525.1| acetyl-CoA carboxylase, biotin carboxylase [Bacteroides sp. 2_1_22]
 gi|294645583|ref|ZP_06723276.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Bacteroides
           ovatus SD CC 2a]
 gi|294809959|ref|ZP_06768633.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Bacteroides
           xylanisolvens SD CC 1b]
 gi|229444904|gb|EEO50695.1| biotin carboxylase [Bacteroides sp. D1]
 gi|262353191|gb|EEZ02286.1| acetyl-CoA carboxylase, biotin carboxylase [Bacteroides sp. 2_1_22]
 gi|292639028|gb|EFF57353.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Bacteroides
           ovatus SD CC 2a]
 gi|294442805|gb|EFG11598.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Bacteroides
           xylanisolvens SD CC 1b]
 gi|295087811|emb|CBK69334.1| biotin carboxylase [Bacteroides xylanisolvens XB1A]
          Length = 503

 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 84/220 (38%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       E   + +        +    K  +++++   G+P+ P    
Sbjct: 76  AIHPGYGFLSENADFARRCEEEGVIFIGPSADIISKMGIKTEARKIMREAGLPIVPGTET 135

Query: 114 NRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN----HGDQ 165
               +D      + +  P ++K L GG   G+ +++ ++ +   L  S S        D 
Sbjct: 136 PVQGIDEVKKVANEVGYPIMLKALAGGGGKGMRLVRTEEEVETALRLSQSEAGTSFGNDA 195

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+Y++    +   +MGD   +V  +   +        K             +  +  
Sbjct: 196 VYIEKYIENPHHIEVQIMGDKYGNVVHLYERECSIQRRNQK----VIEESPSPFVKEETR 251

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K++ ++A  A + IG       +F+ D   +  ++LE+N 
Sbjct: 252 KKMLKVAVEACKKIGYYSAGTLEFMMDK-DQNFYFLEMNT 290


>gi|161486099|ref|NP_755878.2| acetyl-CoA carboxylase biotin carboxylase subunit [Escherichia coli
           CFT073]
          Length = 449

 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 80/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         L  DK+ +   +   GVP  P    
Sbjct: 77  AIHPGYGFLSENANFAEQVERSGFIFIGPKAETIRLMGDKVSAIAAMKKAGVPCVPGSDG 136

Query: 112 -LVNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
            L +    +      I  P +IK   GG   G+ V++ D  +   +     ++ +    D
Sbjct: 137 PLGDDMDKNRAIAKRIGYPVIIKASGGGGGRGMRVVRGDAELAQSISMTRAEAKAAFSND 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+Y++    +   V+ D   +   +A           K          PA  I  +
Sbjct: 197 MVYMEKYLENPRHVEIQVLADGQGNAIYLAERDCSMQRRHQK-----VVEEAPAPGITPE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + + +      A   IG RG    +FLF   + + +++E+N 
Sbjct: 252 LRRYIGERCAKACVDIGYRGAGTFEFLF--ENGEFYFIEMNT 291


>gi|332141086|ref|YP_004426824.1| methylcrotonyl-CoA carboxylase, alpha subunit [Alteromonas
           macleodii str. 'Deep ecotype']
 gi|327551108|gb|AEA97826.1| methylcrotonyl-CoA carboxylase, alpha subunit [Alteromonas
           macleodii str. 'Deep ecotype']
          Length = 666

 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 77/221 (34%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+     +    +I +      A      K  +K ++   GVP+ P    
Sbjct: 77  AIHPGYGFLSENAEFAKLCAKNDIIFVGPPASAIEAMGSKSAAKHIMEKAGVPLVPGYHG 136

Query: 114 NRFTM----DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
           +         +   +  P ++K   GG   G+  +  ++     L  +   +      D 
Sbjct: 137 DDQDESVLKAAADDMGYPVLLKAAAGGGGKGMRQVWSEKDFSQALNAAKRESMASFGDDH 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDI 223
           +L+E+Y+     +   V  D   +   +           ++          PA  +   +
Sbjct: 197 MLVEKYLTRPRHVEIQVFCDTHGNGVYL-----FERDCSVQRRHQKIIEEAPAPNMSAHV 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +++   A LA +AI   G    +FL D      +++E+N 
Sbjct: 252 REKMGEAAILAAKAINYVGAGTVEFLLDE-DDSFYFMEMNT 291


>gi|313889047|ref|ZP_07822705.1| pyruvate carboxylase [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312844920|gb|EFR32323.1| pyruvate carboxylase [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 1141

 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 40/242 (16%), Positives = 82/242 (33%), Gaps = 22/242 (9%)

Query: 35  QIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSM 91
            +D+D  +  +      D     +H  +G   E+           I +            
Sbjct: 63  YLDIDE-IISLAKKKGVD----AIHPGYGFLSENPEFARKCREEGITFIGPSPEVMEKLG 117

Query: 92  DKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI----SPPYVIKPLKGGSSLGIIVIKKD 147
           DK+ SK V    GV   P I       +   L       P +IK   GG   G+ + +  
Sbjct: 118 DKITSKIVAKEAGVATIPGIEKPIRNEEEALLFARSCGYPVMIKAAAGGGGRGMRIAQSQ 177

Query: 148 QSI----PLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSY 202
           + +         ++      D + IE+Y+     +   ++GD   ++  +          
Sbjct: 178 EELLDKFQSAKNEAKKAFGDDSMFIEKYLHKPKHIEVQILGDEYGNIVHLYERDCSIQRR 237

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
             K       +     +P+++ +E+ + A    ++IG       +FL D      +++E+
Sbjct: 238 HQK----VIEYTPAFSLPVELREEICQDALKIARSIGYSNAGTVEFLVDSKGDH-YFIEV 292

Query: 263 NV 264
           N 
Sbjct: 293 NP 294


>gi|283853618|ref|ZP_06370853.1| phosphoribosylamine/glycine ligase [Desulfovibrio sp. FW1012B]
 gi|283570980|gb|EFC19005.1| phosphoribosylamine/glycine ligase [Desulfovibrio sp. FW1012B]
          Length = 376

 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 30/168 (17%), Positives = 56/168 (33%), Gaps = 8/168 (4%)

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVI 130
           E   I        AS L   K  +K+V+++ GVP          R        I  P V+
Sbjct: 83  ESAGIACFGPDAYASGLEGSKAFAKEVMAAAGVPTAAYETFTDARAARAYVEKIGAPLVV 142

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSS---SWNH-GDQLLIEQYVDGIELT--CGVMGD 184
           K     +  G+ V          + ++    ++   G  +++E+ + G E +      G 
Sbjct: 143 KADGLAAGKGVTVALTTDEALAAIDEAMVKGAFGQAGATVVVEEALVGEEASFLAFCDGK 202

Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            ++ +T     K+ F       +     +     +P D Y     L  
Sbjct: 203 NAVPMTACQDHKAVFDGDTGPNTGGMGAYCPAPVLPPDRYAATMDLVI 250


>gi|281418842|ref|ZP_06249861.1| cyanophycin synthetase [Clostridium thermocellum JW20]
 gi|281407926|gb|EFB38185.1| cyanophycin synthetase [Clostridium thermocellum JW20]
          Length = 882

 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 50/109 (45%), Gaps = 3/109 (2%)

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           ++ +K  +K++++   +PV        F   +     I  P VIKP+      G+ +  K
Sbjct: 211 MAGNKQLAKRLLAENKIPVPDGDTAYSFEGALQIAREIGFPVVIKPVDSNQGKGVTLNIK 270

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195
           D+   +++  + +  +   +L+E+YV G +    V+GD    V E   P
Sbjct: 271 DEQ-EMEIAYNEARKYSRVVLVEKYVKGKDYRVLVVGDRVAAVAERRPP 318


>gi|195941121|ref|ZP_03086503.1| hypothetical protein EscherichcoliO157_32822 [Escherichia coli
           O157:H7 str. EC4024]
          Length = 300

 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 58/289 (20%), Positives = 114/289 (39%), Gaps = 45/289 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-------VDRSVGLVLAHLK--- 50
           +A+L       R+ +L S K    A    G +V  +D       +D +   +    +   
Sbjct: 3   IAILS------RDGTLYSCKRLREAAAKRGHQVEILDPMSCYMNIDPAASSIHYKGRKLP 56

Query: 51  -PDLAFNVLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV 105
             D     + G+    +G   L Q   E+L   Y  +  +A + + DK+RS Q+++  G+
Sbjct: 57  HFDAVIPRI-GSQITYYGTAALRQ--FEMLG-SYPLNESVAISRARDKLRSLQLLARQGI 112

Query: 106 --PVCPSILVNRFTMDSQHLISP-PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
             PV         T D   ++   P VIK ++G   +G+++ +  Q+     +  +    
Sbjct: 113 DLPVTGIAHSPDDTSDLIDMVGGAPLVIKLVEGTQGIGVVLAETRQAAES--VIDAFRGL 170

Query: 163 GDQLLIEQYVD---GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI 219
              +L+++Y+    G ++ C V+GD  +   E    + DF S   +        +     
Sbjct: 171 NAHILVQEYIKEAKGRDIRCFVVGDEVVAAIERQAKEGDFRSNLHRGGIARVALI----- 225

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268
                +  + +A  A Q +G   ++  D       R    +E+N  PG+
Sbjct: 226 ----SEREREIAVKAAQTLGL-DVAGVD--LLRAERGPLVMEVNASPGL 267


>gi|159905216|ref|YP_001548878.1| phosphoribosylglycinamide formyltransferase 2 [Methanococcus
           maripaludis C6]
 gi|159886709|gb|ABX01646.1| phosphoribosylglycinamide formyltransferase 2 [Methanococcus
           maripaludis C6]
          Length = 388

 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 42/248 (16%), Positives = 85/248 (34%), Gaps = 22/248 (8%)

Query: 31  FKVSQIDVDR--SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
            +   ID+    ++  V+   KPDL    +      +      LE     +      A+ 
Sbjct: 52  HRFHVIDMKDGGALRAVIEREKPDLIVPEIEAI---NTDTLKELETEGY-HVVPTANATK 107

Query: 89  LSMDKM-RSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVIK 145
           L+MD+    +      G+               ++   I  P VIKP+   S  G   IK
Sbjct: 108 LTMDREGIRRIAFEKLGLRTAKYEFAENLEELKEAVQRIGIPCVIKPIMSSSGKGQSTIK 167

Query: 146 KDQSIPL--DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYE 203
            +  I    D  ++++   G ++++E+++   +    ++   + + T    P        
Sbjct: 168 SESDIEKSWDYAKNAARGIGTKVIVEEFIK-FDYEITLLTARTAEGTRFCEPIGHIQI-- 224

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
                       P  +      + Q +A      +G  GI   +     L  +V + E++
Sbjct: 225 ---DGDYHESWQPHPMCAPTKAKAQEMAKKITDELGGYGIFGVELFV--LDDEVIFSEVS 279

Query: 264 VQP---GM 268
            +P   GM
Sbjct: 280 PRPHDTGM 287


>gi|119713670|gb|ABL97721.1| pyruvate carboxylase [uncultured marine bacterium EB0_39H12]
          Length = 1124

 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 44/253 (17%), Positives = 97/253 (38%), Gaps = 25/253 (9%)

Query: 26  LEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHS 82
           +++ G +   +D+ + +  +    K D     +H  +G   E+ L  +  +  +I +   
Sbjct: 50  IDEKGAQAY-LDI-KEIIRIAKESKAD----AIHPGYGFLSENSLFASAAKRAKIKFIGP 103

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP-----PYVIKPLKGGS 137
                 +  DK  +K++ SS  +PV            +Q  +         VIK + GG 
Sbjct: 104 NERTLKVFGDKTSAKELASSLNIPVIAGTHEKTSIRKAQSFMKSLKKNSSVVIKAISGGG 163

Query: 138 SLGIIVIKKDQSIP-----LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192
             G+ V+ K   +            SS++  D  L E   +   +   ++GD + +V+ +
Sbjct: 164 GRGMRVVSKIDDLKESFNRAASEAKSSFDSPDLYLEEYLKNYRHIEFQIIGDGTGEVSHL 223

Query: 193 AVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
                   S + +Y  L    + P   + L++  ++   +    Q +   G++  +FL +
Sbjct: 224 ---HERECSIQRRYQKL--IEIAPSPSLDLELKNKMVEASLALTQKLKYEGLATIEFLVN 278

Query: 252 PLSRKVFWLEINV 264
                  ++E N 
Sbjct: 279 VEKNDFRFIECNP 291


>gi|221066958|ref|ZP_03543063.1| Carbamoyl-phosphate synthase L chain ATP-binding [Comamonas
           testosteroni KF-1]
 gi|220711981|gb|EED67349.1| Carbamoyl-phosphate synthase L chain ATP-binding [Comamonas
           testosteroni KF-1]
          Length = 682

 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 74/220 (33%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       E   I +      + A   DK+ SK++     V   P    
Sbjct: 77  AVHPGYGFLSENEGFARRCEEEGIAFIGPKSHSIAAMGDKIASKKLAGEAQVNTIPGYND 136

Query: 114 ----NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
                   ++    I  P +IK   GG   G+ V   D+           ++ +    D+
Sbjct: 137 AIGGPEQAVEIAKGIGYPVMIKASAGGGGKGLRVAFNDKEAFEGFASCQNEARNSFGDDR 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE++V +   +   ++GD+  +V  +   +        K             I     
Sbjct: 197 IFIEKFVQEPRHIEIQILGDSHGNVVYLNERECSIQRRHQK----VIEEAPSPFISDATR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K +   A    +A+  +     +F      +  ++LE+N 
Sbjct: 253 KAMGEQAVALAKAVKYQSAGTVEF-VVGKDQDFYFLEMNT 291


>gi|316941823|gb|ADU75857.1| cyanophycin synthetase [Clostridium thermocellum DSM 1313]
          Length = 882

 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 50/109 (45%), Gaps = 3/109 (2%)

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           ++ +K  +K++++   +PV        F   +     I  P VIKP+      G+ +  K
Sbjct: 211 MAGNKQLAKRLLAENKIPVPDGDTAYSFEGALQIAREIGFPVVIKPVDSNQGKGVTLNIK 270

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195
           D+   +++  + +  +   +L+E+YV G +    V+GD    V E   P
Sbjct: 271 DEQ-EMEIAYNEARKYSRVVLVEKYVKGKDYRVLVVGDRVAAVAERRPP 318


>gi|294056034|ref|YP_003549692.1| carbamoyl-phosphate synthase, large subunit [Coraliomargarita
           akajimensis DSM 45221]
 gi|293615367|gb|ADE55522.1| carbamoyl-phosphate synthase, large subunit [Coraliomargarita
           akajimensis DSM 45221]
          Length = 1078

 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 49/280 (17%), Positives = 96/280 (34%), Gaps = 37/280 (13%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +              DV         ++  ++A  KPD    
Sbjct: 29  SGTQACKALREEGYRVVLVNSNPATIMTDPEFADVTYIEPLTVDALEKIIAQEKPDALLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G  G +  +      IL    +    +   A      +   KQ +   G+ V  S  
Sbjct: 89  TLGGQTGLNLSMDLNEAGILAKYGVEMIGAKPEAIEKGEARDVFKQAMLKIGLDVARSAT 148

Query: 113 VNRFT----MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168
           VN          + +   P +I+P       G  +    +     +      +   ++L+
Sbjct: 149 VNTLADALKAADEIIGDFPIIIRPSFTLGGSGGGIAYNREEYEKIVQAGLDASPTTEVLV 208

Query: 169 EQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYK 225
           E+ + G  E    VM D       I   ++    ++       +S  + PA  +    Y+
Sbjct: 209 EECLLGWKEYEMEVMRDHKDQCVVICSIEN----FDPMGVHTGDSITIAPAMTLTDKEYQ 264

Query: 226 EVQRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
            ++  +F   + +G   G S   F  +P + ++  +E+N 
Sbjct: 265 LMRDASFACIREVGVETGGSNIQFSVNPANGRMVVIEMNP 304



 Score = 59.8 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 24/197 (12%), Positives = 73/197 (37%), Gaps = 10/197 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYV 129
           LE   +    +       + D+   + ++   G+    + + N      +    I  P +
Sbjct: 655 LEAHGVNIIGTSPSMIDAAEDRNLFRDILDRVGLKQPKNRIANSQEQAYELAGEIGFPIL 714

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P       G+ ++     +   + +      G  +L++Q++ D  EL    + D    
Sbjct: 715 LRPSFVLGGRGMFIVYDMDEMKKIIREVFDVAPGKPVLLDQFLEDAYELDVDCISDGETT 774

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           V    +   +F          ++  V+P   +  ++ + V++ ++   + +   G+   +
Sbjct: 775 VIGGMLQHVEFAGVHS----GDAAMVMPPHTLSDEMLETVRQASYALAKELEVVGL--MN 828

Query: 248 FLFDPLSRKVFWLEINV 264
             +     +++ +E+N 
Sbjct: 829 VQYAIKDNELYIIEVNP 845


>gi|229180162|ref|ZP_04307506.1| Carbamoyl-phosphate synthase large chain [Bacillus cereus 172560W]
 gi|228603371|gb|EEK60848.1| Carbamoyl-phosphate synthase large chain [Bacillus cereus 172560W]
          Length = 1018

 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 26/221 (11%), Positives = 80/221 (36%), Gaps = 20/221 (9%)

Query: 68  VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLIS 125
           + A LE   +    + +     + D+ + +  ++  G+P             +     I 
Sbjct: 588 LAAKLEAHGVKILGTSLEDLDRAEDRDKFEAALTQLGIPQPVGKTATTVEQAVAIADKIG 647

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            P +++P        + ++ + + +   +  +   +    +LI++Y+ G E+    + D 
Sbjct: 648 YPVLVRPSYVLGGRAMEIVYRQEELLHYMKNAVKVHADHPVLIDRYMVGKEIEVDAISDG 707

Query: 186 S---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCR 241
               +      + ++  +S        +S  V P + +   + +++        + +   
Sbjct: 708 ENVFIPGIMEHIERAGVHS-------GDSIGVYPPQSLSDKLKEQIIEHTIALGKGLNIV 760

Query: 242 GISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277
           G+    F+      +V+ +E+N       P ++ ++  P  
Sbjct: 761 GLLNIQFVV--FEDQVYVIEVNPRASRTVPFLSKITGVPMA 799



 Score = 65.1 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 42/260 (16%), Positives = 96/260 (36%), Gaps = 13/260 (5%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMR 95
             V  ++   +PD     L G  G +  V+     ILE   +    + + A   + D+  
Sbjct: 18  EFVSRIIRKERPDAILPTLGGQTGLNMAVELAKSGILEECGVEILGTKLSAIEQAEDRDL 77

Query: 96  SKQVVSSCGVPVCPSILVNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153
            + ++     P+  S +++      +    I  P +++P       G  +   ++ +   
Sbjct: 78  FRSLMQELNEPIPSSTIIHTLEEAHEFVKEIGYPVIVRPAFTMGGTGGGICSNEEELIEI 137

Query: 154 LLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212
           +      +   Q L+E+ + G  E+   VM D++ +   I V   +       ++  +  
Sbjct: 138 VSGGLKHSPVTQCLLEKSIAGCKEIEYEVMRDSNDNA--IVVCNMENIDPVGVHTGDSIV 195

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
                 +    Y+ ++  +    +A+G  G        DP S + + +E+N  P ++  S
Sbjct: 196 VAPSQTLSDREYQMLRNTSLRIIRALGIEGGCNVQLALDPYSFQYYVIEVN--PRVSRSS 253

Query: 273 IFPEMAAYAGYSFRELLLWM 292
                +   GY   +L   +
Sbjct: 254 --ALASKATGYPIAKLAAKI 271


>gi|261366768|ref|ZP_05979651.1| putative carbamoyl-phosphate-synthetase [Subdoligranulum variabile
           DSM 15176]
 gi|282571598|gb|EFB77133.1| putative carbamoyl-phosphate-synthetase [Subdoligranulum variabile
           DSM 15176]
          Length = 403

 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 38/236 (16%), Positives = 84/236 (35%), Gaps = 28/236 (11%)

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCG--VPVCPSILVNRFTMDSQHLISPPYVI 130
           E + +P+      A+ +  DK   ++ ++  G  VP            +  +  + P ++
Sbjct: 85  EKMGLPFQ-CSYEAACILQDKGLFREFLTKHGFNVPHAKRYTEKNVPAEDLNFFTWPVIV 143

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV--DGIE-LTCGVMGDASL 187
           KP+    S G+  +   + +   +  +   +H    +IE ++  +G    T     D  L
Sbjct: 144 KPVDSAGSKGVTKVNTPEELLAAIDVAVEQSHNGAFIIEDFLTFEGYHSSTDPFTVDGKL 203

Query: 188 DVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD----IYKEVQRLAFLAHQAIGCRGI 243
                +      +  E +     +  + P+ +  +    + +E+QRL  L H   G   I
Sbjct: 204 QFITYS---DQLFDPEAENPYTPARIIWPSSMKEEHQEYLTREIQRLMDLLHTGTGIYNI 260

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA-----------AYAGYSFREL 288
                     + K + +E++ + G   ++   +MA              G    EL
Sbjct: 261 ETC----VGANDKPYIMEVSPRGGGCRIAELQKMAYGVDLIENEVRKAVGMPLLEL 312


>gi|126696383|ref|YP_001091269.1| carbamoyl-phosphate synthase, large subunit [Prochlorococcus
           marinus str. MIT 9301]
 gi|126543426|gb|ABO17668.1| carbamoyl-phosphate synthase, large subunit [Prochlorococcus
           marinus str. MIT 9301]
          Length = 1098

 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 54/279 (19%), Positives = 105/279 (37%), Gaps = 36/279 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL +AG+++  I+ + +                     V  ++   KPD    
Sbjct: 29  SGTQACKALRNAGYEIVLINSNPASIMTDPEVASKTYIEPLTPEIVSQIILREKPDAILP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  V+      L+   I    + + A   + D+   K+ +    V VCPS +
Sbjct: 89  TMGGQTALNLAVKLSESNFLKQNNIELIGADLRAINKAEDRQLFKESMEKINVNVCPSGI 148

Query: 113 ---VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
              ++     S+ + S P +I+P      +G  +    +            +  +Q+LIE
Sbjct: 149 ASNLDEAIEVSRKICSYPLIIRPAFTLGGVGGGIAFNLEEFVELCKSGLEESPSNQILIE 208

Query: 170 QYVDG-IELTCGVMGDASL-DVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKE 226
           + + G  E    VM D +   V   ++   D           +S  V PA+ +    Y+ 
Sbjct: 209 KSLIGWKEFELEVMRDTADNVVIVCSIENLDPMGVHT----GDSITVAPAQTLTDKEYQR 264

Query: 227 VQRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           ++ L+    + +G   G S   F  +P + +V  +E+N 
Sbjct: 265 LRDLSLKIIREVGVETGGSNIQFAINPSNGEVIVIEMNP 303



 Score = 42.4 bits (99), Expect = 0.090,   Method: Composition-based stats.
 Identities = 30/191 (15%), Positives = 70/191 (36%), Gaps = 10/191 (5%)

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVC-PSILVNRFTMD-SQHLISPPYVIKPLKGGSS 138
            +  ++  L+ D+    +++    +      I  N+   +     I  P V++P      
Sbjct: 682 GTSPISIDLAEDREEFTKILEELSIRQPLNGIARNQDEAEIVAKNIGFPLVVRPSYVLGG 741

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKS 197
             + ++K +  +   + ++   +    +L++QY+ + IE+    + D+   V    + + 
Sbjct: 742 RAMEIVKDENELSRYISEAVKVSPDHPILLDQYLNNAIEIDVDALCDSEGSVVIAGLMEH 801

Query: 198 DFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR- 255
                     S +S   LP   +     + V+    L  Q +   G+    F     +  
Sbjct: 802 V---EPAGIHSGDSACCLPSISLSTSTIENVRNWTKLIAQRLNVVGLINLQFAVINTNNK 858

Query: 256 --KVFWLEINV 264
             K+F LE N 
Sbjct: 859 EKKLFILEANP 869


>gi|123968578|ref|YP_001009436.1| carbamoyl-phosphate synthase, large subunit [Prochlorococcus
           marinus str. AS9601]
 gi|123198688|gb|ABM70329.1| carbamoyl-phosphate synthase, large subunit [Prochlorococcus
           marinus str. AS9601]
          Length = 1098

 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 55/279 (19%), Positives = 108/279 (38%), Gaps = 36/279 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL +AG++V  I+ + +                     V  ++   KPD    
Sbjct: 29  SGTQACKALRNAGYEVVLINSNPASIMTDPEIASKTYIEPLTPEIVSQIILREKPDAILP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  V+      L+   +    + + A   + D+   K+ +    V VCPS +
Sbjct: 89  TMGGQTALNLAVKLSESDFLKENNVELIGADLRAINKAEDRKLFKESMEKINVNVCPSGI 148

Query: 113 ---VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
              ++     S+ + S P +I+P      +G  +    +   +        +  +Q+LIE
Sbjct: 149 ASNLDEAVEVSKKISSYPLIIRPAFTLGGVGGGIAFNLEEFVVLCKSGLEESPSNQILIE 208

Query: 170 QYVDG-IELTCGVMGDASLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPAK-IPLDIYKE 226
           + + G  E    VM D + +V  I   ++ D           +S  V PA+ +    Y+ 
Sbjct: 209 KSLIGWKEFELEVMRDTADNVVIICSIENLDPMGVHT----GDSITVAPAQTLTDKEYQR 264

Query: 227 VQRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           ++ L+    + +G   G S   F  +P + +V  +E+N 
Sbjct: 265 LRDLSLKIIREVGVETGGSNIQFALNPSNGEVIVIEMNP 303



 Score = 43.6 bits (102), Expect = 0.039,   Method: Composition-based stats.
 Identities = 30/191 (15%), Positives = 70/191 (36%), Gaps = 10/191 (5%)

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVC-PSILVN-RFTMDSQHLISPPYVIKPLKGGSS 138
            +  ++  L+ D+    +++    +      I  N +        I  P V++P      
Sbjct: 682 GTSPISIDLAEDREEFTKILKELAIRQPLNGIAHNQKEAAVVAKNIGFPLVVRPSYVLGG 741

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKS 197
             + ++K +  +   + ++   +    +L++QY+ + IE+    + D+   V    + + 
Sbjct: 742 RAMEIVKDENELSRYISEAVKVSPDHPILLDQYLNNAIEIDVDALCDSEGSVVIAGLMEH 801

Query: 198 DFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR- 255
                     S +S   LP   +     + V++   L  Q +   G+    F     +  
Sbjct: 802 V---EPAGIHSGDSACCLPSISLSKSTIENVKKWTKLIAQRLNVVGLINLQFAVTNTNNK 858

Query: 256 --KVFWLEINV 264
             K+F LE N 
Sbjct: 859 EKKLFILEANP 869


>gi|115376277|ref|ZP_01463517.1| acetyl-CoA carboxylase, biotin carboxylase [Stigmatella aurantiaca
           DW4/3-1]
 gi|310823662|ref|YP_003956020.1| acetyl-CoA carboxylase, biotin carboxylase [Stigmatella aurantiaca
           DW4/3-1]
 gi|115366702|gb|EAU65697.1| acetyl-CoA carboxylase, biotin carboxylase [Stigmatella aurantiaca
           DW4/3-1]
 gi|309396734|gb|ADO74193.1| Acetyl-CoA carboxylase, biotin carboxylase [Stigmatella aurantiaca
           DW4/3-1]
          Length = 461

 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 33/220 (15%), Positives = 86/220 (39%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     + E  +I +         L  +K+R+++     G+P+ P    
Sbjct: 77  AIHPGYGFLSENAEFAEVCESCKIRFIGPRPEMLRLMGNKVRARKAALEAGMPLLPGSPH 136

Query: 111 ILVNRFTMDS-QHLISPPYVIKPLKGGSSLGIIVIKK----DQSIPLDLLQSSSWNHGDQ 165
           +L +    ++    I  P ++K   GG   G+ ++++     Q+      ++ +  +   
Sbjct: 137 VLKDAREAEAFAREIGFPVILKAAAGGGGKGMKIVREPSVLAQAFSTAAAEAVASFNNGD 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           L IE+YV+    +   +  D   ++  +   +        K             +  ++ 
Sbjct: 197 LYIERYVEKPRHIEIQIAADEHGNIIHLGERECSVQRRHQK----LIEESPSPALSPELR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            E+ R++  A + +    +   ++L D    + +++E+N 
Sbjct: 253 AEMGRVSVEAMRKLRYNNVGTIEYLLDEH-GQFYFMEMNT 291


>gi|300917423|ref|ZP_07134088.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli MS 115-1]
 gi|300415333|gb|EFJ98643.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli MS 115-1]
          Length = 449

 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 80/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         L  DK+ +   +   GVP  P    
Sbjct: 77  AIHPGYGFLSENANFAEQVERSGFIFIGPKADTIRLMGDKVSAIAAMKKAGVPCVPGSDG 136

Query: 112 -LVNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
            L +    +      I  P +IK   GG   G+ V++ D  +   +     ++ +    D
Sbjct: 137 PLGDDMDKNRAIAKRIGYPVIIKASGGGGGRGMRVVRGDAELAQSISMTRAEAKAAFSND 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+Y++    +   V+ D   +   +A           K          PA  I  +
Sbjct: 197 MVYMEKYLENPRHVEIQVLADGQGNAIYLAERDCSMQRRHQK-----VVEEAPAPGITPE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + + +      A   IG RG    +FLF   + + +++E+N 
Sbjct: 252 LRRYIGERCAKACVDIGYRGAGTFEFLF--ENGEFYFIEMNT 291


>gi|184201344|ref|YP_001855551.1| acyl-CoA carboxylase alpha chain [Kocuria rhizophila DC2201]
 gi|183581574|dbj|BAG30045.1| acyl-CoA carboxylase alpha chain [Kocuria rhizophila DC2201]
          Length = 603

 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 32/220 (14%), Positives = 75/220 (34%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+    A +    + +      A A   DK+ ++ +      P  P    
Sbjct: 92  AIHPGYGFLSENAEFAAAVISAGLTWIGPPPAAIAQLGDKVAARHIAEKVDAPQVPGTAD 151

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL----DLLQSSSWNHGDQ 165
            +   +  +D       P  IK   GG   GI V+++  +IP      + ++++     +
Sbjct: 152 PVTSAQEVLDFVDEHGLPIAIKAAFGGGGRGIKVVRERDAIPELYESAVREATAAFGRGE 211

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             +E+++D    +    + D   +V  ++           K             +  +  
Sbjct: 212 CFVERFLDAPRHVETQCLADQYGNVVVVSTRDCSLQRRNQK----LVEEAPAPFLTEEQN 267

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +   +    +    +G    +FL       + +LE+N 
Sbjct: 268 RRLYESSKAILREADYQGAGTCEFLV-GQDGTISFLEVNT 306


>gi|91773291|ref|YP_565983.1| hypothetical protein Mbur_1315 [Methanococcoides burtonii DSM 6242]
 gi|91712306|gb|ABE52233.1| protein of unknown function (DUF201) with ATP-grasp domain
           [Methanococcoides burtonii DSM 6242]
          Length = 307

 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 30/195 (15%), Positives = 70/195 (35%), Gaps = 28/195 (14%)

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLG 140
                ++++  DK+   +++ + G+ V  +                 +V KP  G +S  
Sbjct: 100 GCSPDSASICSDKLECTRILENAGLAVPRTYAFGESM-----PFKGCWVTKPRYGCASED 154

Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM-GDASLDVTEIAVPKSDF 199
             V  +              +     +  +Y++G  L+  ++ G   L +T  A  + + 
Sbjct: 155 TFVCHRP-------------DIRRDHIATEYIEGEHLSVSLICGKEQLPLTVNAQ-RMEI 200

Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
              +            P +   D  +E+  +A  A +A+GC G    D +      + + 
Sbjct: 201 DPAKDASKIDYCGCTTPYR--TDREQELYDVAKKATRALGCNGYIGVDIIL---GDRPYI 255

Query: 260 LEINVQPGMTPVSIF 274
           +++N +P     S+ 
Sbjct: 256 VDVNPRP---TTSLV 267


>gi|125974689|ref|YP_001038599.1| cyanophycin synthetase [Clostridium thermocellum ATCC 27405]
 gi|125714914|gb|ABN53406.1| cyanophycin synthetase [Clostridium thermocellum ATCC 27405]
          Length = 882

 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 50/109 (45%), Gaps = 3/109 (2%)

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           ++ +K  +K++++   +PV        F   +     I  P VIKP+      G+ +  K
Sbjct: 211 MAGNKQLAKRLLAENKIPVPDGDTAYSFEGALQIAREIGFPVVIKPVDSNQGKGVTLNIK 270

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195
           D+   +++  + +  +   +L+E+YV G +    V+GD    V E   P
Sbjct: 271 DEQ-EMEIAYNEARKYSRVVLVEKYVKGKDYRVLVVGDRVAAVAERRPP 318


>gi|313619506|gb|EFR91190.1| pyruvate carboxylase [Listeria innocua FSL S4-378]
          Length = 1146

 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 35/243 (14%), Positives = 82/243 (33%), Gaps = 25/243 (10%)

Query: 35  QIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSM 91
            +D+  ++  +      D     +H  +G   E+       E   I +         +  
Sbjct: 63  YLDI-ENIIEIAKESGAD----AIHPGYGFLSENIEFARRCEQEGIIFVGPKSKHLDMFG 117

Query: 92  DKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK- 146
           DK+++K+      +PV P     +   +   +       P +IK   GG   G+ V++  
Sbjct: 118 DKIKAKEQALLADIPVIPGSDGPVAGIKEVEEFGEKNGYPLMIKASLGGGGRGMRVVESK 177

Query: 147 ---DQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSY 202
               +S      ++ +    D++ +E+ V +   +   ++GD   ++  +          
Sbjct: 178 EHVKESFERASSEAKAAFGNDEVYVEKCVMNPKHIEVQILGDTHGNIVHLFERDCSIQRR 237

Query: 203 ELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
             K        V P   I  ++   +   A    + +        +FL        +++E
Sbjct: 238 HQK-----VVEVAPCNAITSELRNRICDAAVKLMKNVDYINAGTVEFLV--EGDNFYFIE 290

Query: 262 INV 264
           +N 
Sbjct: 291 VNP 293


>gi|313681206|ref|YP_004058944.1| formate-dependent phosphoribosylglycinamide formyltransferase
           [Sulfuricurvum kujiense DSM 16994]
 gi|313154066|gb|ADR32744.1| formate-dependent phosphoribosylglycinamide formyltransferase
           [Sulfuricurvum kujiense DSM 16994]
          Length = 387

 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 39/278 (14%), Positives = 86/278 (30%), Gaps = 41/278 (14%)

Query: 19  GKACASALEDAGFKVSQID--------------------VDRSVGLVLAHLKPDLAFNVL 58
           GK  A   +  G +V  +D                       +V  ++   KPD     +
Sbjct: 23  GKEVAIEAQRLGIEVIAVDRYNHAPAHLVANRSHVVNMQDKEAVLKLIRKEKPDYILPEI 82

Query: 59  HGNFGEDGLVQAIL--ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116
                E   + A+   E        +    +     K   +      G+       V+ +
Sbjct: 83  -----EAISIDALFAAEAEGFCVIPNAEAVNKTMNRKNIRRFAAEDLGLKTSRYHFVSTY 137

Query: 117 TM--DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS-SSWNHGDQLLIEQYVD 173
                S   +  P VIKP+   S  G  + +  + +      +  +     +L++E+++ 
Sbjct: 138 EDMCASAEDVGFPCVIKPVMSSSGHGQSIARTREDLAASWEIAKEARGDASELIVEEFIR 197

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
                  +     ++              +  YS        P ++     K  Q++A  
Sbjct: 198 FDYEITLLTARNGVETVFCEPIGHIQKDGDYIYSW------QPMEMSKKALKRSQKIAKA 251

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP---GM 268
               +G +G+   +        +V++ E++ +P   GM
Sbjct: 252 ITDGLGGKGLFGVELFV--AGDEVYFSEVSPRPHDTGM 287


>gi|323527387|ref|YP_004229540.1| acetyl-CoA carboxylase, biotin carboxylase [Burkholderia sp.
           CCGE1001]
 gi|323384389|gb|ADX56480.1| acetyl-CoA carboxylase, biotin carboxylase [Burkholderia sp.
           CCGE1001]
          Length = 455

 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 35/222 (15%), Positives = 78/222 (35%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H  +G   E+      +E     +         +  DK+ +KQ +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAERVEQSGFTFIGPRPETIRMMGDKVTAKQTMIKTGVPCVPGSEG 136

Query: 113 ----VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
                 +  +     I  P +IK   GG   G+ V+  + ++   +     ++       
Sbjct: 137 ALPDDPKEVVKIARQIGYPVIIKAAGGGGGRGMRVVHTEAALVNAVNMTREEAGRAFGNP 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
           Q+ +E++++    +   V+ D+  +   +            K          PA  I   
Sbjct: 197 QVYMEKFLENPRHIEIQVLSDSFKNAIWLGERDCSMQRRHQK-----VIEEAPAPGIARR 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +   +      A + +G  G    +FL+   + + +++E+N 
Sbjct: 252 LIDRIGDRCADACKKMGYLGAGTFEFLY--ENGEFYFIEMNT 291


>gi|288574588|ref|ZP_06392945.1| carbamoyl-phosphate synthase, large subunit [Dethiosulfovibrio
           peptidovorans DSM 11002]
 gi|288570329|gb|EFC91886.1| carbamoyl-phosphate synthase, large subunit [Dethiosulfovibrio
           peptidovorans DSM 11002]
          Length = 1044

 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 54/288 (18%), Positives = 100/288 (34%), Gaps = 37/288 (12%)

Query: 7   GISSEREVSLSSGKACASALEDAGF-------KVSQIDVD--------------RSVGLV 45
           G ++E + S   G     AL++ G+         + I  D               SV  +
Sbjct: 18  GQAAEFDYS---GSQACRALKEEGYGTILLNSNPATIQTDTSLADMVYLRPLTVESVEEI 74

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           LA  K       L G  G +  V      + +   +    + + +   +  +   +  VS
Sbjct: 75  LAAHKIYGVVATLGGQTGLNLCVSCQDMGLWDRYGVRVLGTSVASILKAEGRESFRDCVS 134

Query: 102 SCGVPVCPSILV--NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
           S G PV  S  V   +  +        P VI+P       G  V + + S+   + +   
Sbjct: 135 SIGEPVVESAYVGSMKEALAFAEKTPFPMVIRPDFTLGGTGGGVARDESSLKRIVAEGLK 194

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASL-DVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
            +   ++L+E+Y+ G  E+   V+ D S   +    +   D           +S  V P 
Sbjct: 195 ASPVSRVLVERYLKGWREIEVEVVRDGSGNSLAVCGMENVDPMGVHT----GDSVVVSPV 250

Query: 218 -KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +   I++ ++  A     A+  RG     F   P   +   +E+N 
Sbjct: 251 LSLSDRIWQTLRYSALRIVDALDVRGACNVQFGLAPDGDEYVVIEVNP 298



 Score = 57.8 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 48/336 (14%), Positives = 99/336 (29%), Gaps = 68/336 (20%)

Query: 5   MGGISSEREV-SLSSGKACA-----------------------SALEDAGFKVSQI---- 36
            G  S+E +V S  SG+A A                        AL   G +   +    
Sbjct: 534 YGSYSAEGDVFSAPSGRAVAVLGSGSIRIGQGVEFDYCCVKAVEALRRRGIRAIMVNDNP 593

Query: 37  -------DVD----------RSVGLVLAHLKPDLAFNVLHG----NFGEDGLVQAILELL 75
                  D+             V  +L        F    G      G D      LE  
Sbjct: 594 ETVSTDHDISDGLYVEPLTAEDVEALLDREGISSVFASFGGQTSLKVGLD------LEAR 647

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPL 133
                         + D+     ++    +P      V   +  +     I  P +++P 
Sbjct: 648 GKELIGISGDTVIQAEDRGAFVSLLDRLAIPYPKGTAVRDIKEGLSCGDGIGYPLMVRPS 707

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
                  + V+ + Q +   L ++ S +   ++L+++++ G E    V+ D         
Sbjct: 708 FVIGGAAMRVVYRPQDLEGVLERAFSVDADQEVLMDRFLTGKEFEVDVICDGKDVFVPGI 767

Query: 194 VPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
               D           +S  V P   +  ++  E+  +     + +  +G+     +   
Sbjct: 768 FEHLDPAGIHS----GDSMAVFPDISLNEEMRLEIANICESLGKTMNIKGLLNVQMVLH- 822

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
              +++ +E N +   T     P +A   G    ++
Sbjct: 823 -GGRLWVIEANPRASRT----VPIVAKLTGLPLVDI 853


>gi|224510928|pdb|3G8D|A Chain A, Crystal Structure Of The Biotin Carboxylase Subunit, E296a
           Mutant, Of Acetyl-Coa Carboxylase From Escherichia Coli
 gi|224510929|pdb|3G8D|B Chain B, Crystal Structure Of The Biotin Carboxylase Subunit, E296a
           Mutant, Of Acetyl-Coa Carboxylase From Escherichia Coli
          Length = 444

 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 80/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         L  DK+ +   +   GVP  P    
Sbjct: 77  AIHPGYGFLSENANFAEQVERSGFIFIGPKAETIRLMGDKVSAIAAMKKAGVPCVPGSDG 136

Query: 112 -LVNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
            L +    +      I  P +IK   GG   G+ V++ D  +   +     ++ +    D
Sbjct: 137 PLGDDMDKNRAIAKRIGYPVIIKASGGGGGRGMRVVRGDAELAQSISMTRAEAKAAFSND 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+Y++    +   V+ D   +   +A           K          PA  I  +
Sbjct: 197 MVYMEKYLENPRHVEIQVLADGQGNAIYLAERDCSMQRRHQK-----VVEEAPAPGITPE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + + +      A   IG RG    +FLF   + + +++E+N 
Sbjct: 252 LRRYIGERCAKACVDIGYRGAGTFEFLF--ENGEFYFIEMNT 291


>gi|169153894|emb|CAQ14389.1| pyruvate carboxylase [Danio rerio]
          Length = 472

 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 31/220 (14%), Positives = 73/220 (33%), Gaps = 19/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E            + +            DK+ ++ +    GVPV P    
Sbjct: 115 AIHPGYGFLSERADFAQACAEAGVRFIGPSPEVVRKMGDKVEARALAIKAGVPVVPGTDA 174

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL----DLLQSSSWNHGDQ 165
            I   +   +       P + K   GG   G+ V++  + +         ++ +      
Sbjct: 175 PISCLQEAQEFAKTYDFPIIFKAAYGGGGRGMRVVRNYEELEENYQRAYSEALAAFGNGA 234

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDI 223
           L +E++++    +   ++GD   +V  +            K        + P A +   +
Sbjct: 235 LFVEKFIEKPRHIEVQILGDKYGNVIHLYERDCSIQRRHQK-----VVEIAPAAHLDSHL 289

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
              +   +    + +G       +FL D   +  +++E+N
Sbjct: 290 RDRLTLDSVNLAKQVGYENAGTVEFLVDKHGKH-YFIEVN 328


>gi|78213340|ref|YP_382119.1| carbamoyl phosphate synthase large subunit [Synechococcus sp.
           CC9605]
 gi|78197799|gb|ABB35564.1| carbamoyl-phosphate synthase, large subunit [Synechococcus sp.
           CC9605]
          Length = 1107

 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 58/283 (20%), Positives = 95/283 (33%), Gaps = 44/283 (15%)

Query: 18  SGKACASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLA------------FN 56
           SG     AL    F+V  I         D + +    +  L PD+               
Sbjct: 29  SGTQACKALRAEEFEVILINSNPASIMTDPEMADRTYIEPLTPDVVTRVIEKERPDALLP 88

Query: 57  VLHG--------NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
            + G           E+G     LE   +    + + A   + D++  KQ +   GV VC
Sbjct: 89  TMGGQTALNLAVTLAENGT----LERFGVELIGADLKAIQKAEDRLLFKQAMERIGVKVC 144

Query: 109 PSILV---NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
           PS +             + S P +I+P       G  +    +            +   Q
Sbjct: 145 PSGIASSQEEAEAVGAAIGSFPRIIRPAFTLGGSGGGIAYNPEEYAAICKSGLEASPVSQ 204

Query: 166 LLIEQYVDG-IELTCGVMGD-ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
           +LIEQ + G  E    VM D A   V   ++   D           +S  V PA+ +   
Sbjct: 205 ILIEQSLLGWKEFELEVMRDLADNVVIVCSIENLDPMGVHT----GDSITVAPAQTLTDR 260

Query: 223 IYKEVQRLAFLAHQAIG-CRGISRSDFLFDPLSRKVFWLEINV 264
            Y+ ++  +    + IG   G S   F  +P +  V  +E+N 
Sbjct: 261 EYQRLRDQSIAIIREIGVATGGSNIQFAINPDNGDVVVIEMNP 303



 Score = 54.7 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/219 (14%), Positives = 75/219 (34%), Gaps = 14/219 (6%)

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ--HLISPPYVIKPLKGGSS 138
            +   +   + D+ + + ++    +    + L             +  P V++P      
Sbjct: 688 GTSPESIDRAEDREQFEAILRDLNIRQPRNGLARSEEEARAVATRVGYPVVVRPSYVLGG 747

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKS 197
             + V+  ++ +   + ++        +LI+QY+D  +E+    + D +  V    + + 
Sbjct: 748 RAMEVVFDEEELNRYMREAVQVEPDHPVLIDQYLDNAVEVDVDALCDHTGAVIVGGLME- 806

Query: 198 DFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256
             +       S +S   LPA  +       ++  +    Q +  RG+    F     +  
Sbjct: 807 --HIEPAGIHSGDSACCLPAVSLGEAALNTIREWSRSLAQTLEVRGLINLQFAVQRNTDG 864

Query: 257 ---VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
              V+ +E N +   T     P +A   G     L   +
Sbjct: 865 SEVVYIIEANPRASRT----VPFVAKATGQPLARLATRL 899


>gi|254993086|ref|ZP_05275276.1| pyruvate carboxylase [Listeria monocytogenes FSL J2-064]
          Length = 704

 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 35/243 (14%), Positives = 82/243 (33%), Gaps = 25/243 (10%)

Query: 35  QIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSM 91
            +D+  ++  +      D     +H  +G   E+       E   I +         +  
Sbjct: 63  YLDI-ENIIEIAKESGAD----AIHPGYGFLSENIEFARRCEQEGIIFVGPKSKHLDMFG 117

Query: 92  DKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK- 146
           DK+++K+      +PV P     +   +   +       P +IK   GG   G+ V++  
Sbjct: 118 DKIKAKEQALLADIPVIPGSNGPVAGIKEVEEFGEKNGYPLMIKASLGGGGRGMRVVESK 177

Query: 147 ---DQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSY 202
               +S      ++ +    D++ +E+ V +   +   ++GD   ++  +          
Sbjct: 178 EHVKESFERASSEAKAAFGNDEVYVEKCVMNPKHIEVQILGDTHGNIVHLFERDCSIQRR 237

Query: 203 ELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
             K        V P   I  ++   +   A    + +        +FL        +++E
Sbjct: 238 HQK-----VVEVAPCNAITSELRNRICDAAVKLMKNVDYINAGTVEFLV--EGDDFYFIE 290

Query: 262 INV 264
           +N 
Sbjct: 291 VNP 293


>gi|253997072|ref|YP_003049136.1| carbamoyl-phosphate synthase large subunit [Methylotenera mobilis
           JLW8]
 gi|253983751|gb|ACT48609.1| carbamoyl-phosphate synthase, large subunit [Methylotenera mobilis
           JLW8]
          Length = 1067

 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 27/196 (13%), Positives = 76/196 (38%), Gaps = 8/196 (4%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--QHLISPPYV 129
           LE   +P   +   A  ++ D+ R ++++   G+   P+               I  P V
Sbjct: 648 LEKAGVPIIGTTPDAIDMAEDRERFQKMLQELGLKQPPNRTARTPDEAIRLATEIGYPLV 707

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++++   +   + ++   ++   +L+++++ D +E+    + D    
Sbjct: 708 VRPSYVLGGRAMEIVQEQSQLERYMREAVKVSNESPVLLDRFLNDALEVDVDALSDGEEV 767

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           +    +   +       +S  ++  + P  +   +  E++       +A+G  G+    F
Sbjct: 768 IIGGIMEHVEQAGV---HSGDSACSLPPYSLSAALQDELRVQTKQMAKALGVVGLMNVQF 824

Query: 249 LFDPLSRKVFWLEINV 264
                   V+ LE+N 
Sbjct: 825 AI--QGETVYVLEVNP 838



 Score = 60.5 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 46/278 (16%), Positives = 100/278 (35%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D +            + V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPVTWQVVEKIIEKERPDALLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      +L    +    +   A   + D+ + K+ ++  G+    S +
Sbjct: 89  TMGGQTALNCALDLDKHGVLAKFNVELIGASKEAIDKAEDRQKFKEAMTKIGLGSARSAI 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     +  Q  I  P +I+P       G  +    +       +    +  ++LLIE+
Sbjct: 149 AHSMEEALQVQASIGYPAIIRPSFTMGGSGGGIAYNREEFITICERGLDASPTNELLIEE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D++ +   I   ++ D           +S  V PA+ +    Y+ +
Sbjct: 209 SLLGWKEYEMEVVRDSADNCIIICSIENLDPMGVHT----GDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P   ++  +E+N 
Sbjct: 265 RNASLAVLREIGVDTGGSNVQFAINPDDGRMIVIEMNP 302


>gi|83718462|ref|YP_441533.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia
           thailandensis E264]
 gi|257139779|ref|ZP_05588041.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia
           thailandensis E264]
 gi|83652287|gb|ABC36350.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia
           thailandensis E264]
          Length = 476

 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 49/277 (17%), Positives = 91/277 (32%), Gaps = 38/277 (13%)

Query: 19  GKACASALEDAGFKVSQID----------------VDRSVGLVLAHL----KPDLAFNVL 58
           GK    AL+  G +V  +D                +D +    L  L    +  L    +
Sbjct: 99  GKEVIIALQRLGVEVIAVDRYPNAPGHQVAHRAHVIDMTDPDALRALVDAERAHLVVPEI 158

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKM-RSKQVVSSCGVPVCPSILVNRFT 117
                 D L  A +E   +        A+ L+M++    +      G+P  P      F 
Sbjct: 159 EAI-ATDAL--AEIEAAGVAEVIPTARATQLTMNREGIRRLAAEELGLPTSPYAFAQSFD 215

Query: 118 M--DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH--GDQLLIEQYV- 172
               +   I  P V+KP+   S  G  V++ D  +      + +       ++++E +V 
Sbjct: 216 AFRAAVAQIGFPCVVKPVMSSSGKGQSVVRSDADVEPAWQYAMAGGRVNHGRVIVEGFVQ 275

Query: 173 ---DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
              +  +LT   +  ASL                  Y         P  +     +  + 
Sbjct: 276 FDYEITQLTVRAIDPASLKTRTYFCEPIGHVQVAGDY----VESWQPQPMSAKALERSRD 331

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
           +A     A+G RGI   +         V++ E++ +P
Sbjct: 332 IAHRVTSALGGRGIFGVELFVR--GDDVWFSEVSPRP 366


>gi|72382066|ref|YP_291421.1| carbamoyl phosphate synthase large subunit [Prochlorococcus marinus
           str. NATL2A]
 gi|72001916|gb|AAZ57718.1| carbamoyl-phosphate synthase large subunit [Prochlorococcus marinus
           str. NATL2A]
          Length = 1102

 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 54/279 (19%), Positives = 98/279 (35%), Gaps = 36/279 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVDRS------------VGLVLAHLKPDLAFN 56
           SG     AL   GF+V  +         D + +            V  ++   +PD    
Sbjct: 29  SGTQACKALRSEGFEVILVNSNPASIMTDPETANRTYVEPLTASVVEQIIKIERPDALLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  V+      LE   I    + + A   + D+   K  + + GV VCPS +
Sbjct: 89  TMGGQTALNISVELAESGTLEKYNIELIGADLNAIKKAEDRNLFKIAMKNIGVDVCPSGI 148

Query: 113 ---VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
              +    +    + S P +I+P       G  +                 +   Q+LIE
Sbjct: 149 ASNLQEAEIVGNEISSFPKIIRPAFTLGGSGGGIAYNQDEFLELCKTGLDASPVSQILIE 208

Query: 170 QYVDG-IELTCGVMGD-ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKE 226
           + + G  E    VM D +   V   ++   D           +S  V PA+ +    Y+ 
Sbjct: 209 KSLLGWKEFELEVMRDLSDNVVIICSIENVDPMGVHT----GDSITVAPAQTLTDREYQR 264

Query: 227 VQRLAFLAHQAIG-CRGISRSDFLFDPLSRKVFWLEINV 264
           ++  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 LRDYSISIIREIGVATGGSNIQFAINPNNGEIIVIEMNP 303



 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/220 (14%), Positives = 80/220 (36%), Gaps = 14/220 (6%)

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGSS 138
            +  ++  L+ D+ +  +V+    +    + L   F   +   + I  P V++P      
Sbjct: 687 GTSPISIDLAEDREQFDKVLRRLDIRQPKNGLARTFEESLSVANKIGYPLVVRPSYVLGG 746

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD 198
             + ++ +   +   + ++ +      +LI+QY++       V  DA  DV++  V    
Sbjct: 747 RAMEIVYEQDELERYIKEAVNVELDHPILIDQYLEN---AIEVDVDALCDVSKNVVIGGL 803

Query: 199 FYSYELKYSS-LNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF--DPLS 254
               E       +S   LP   + ++  K ++         +   G+    F    D   
Sbjct: 804 MEHIEPAGIHSGDSACCLPSITLSVESIKTIKHWTKSLAIELDVVGLINLQFAVKRDQEG 863

Query: 255 RKV-FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            ++ + +E N +   T     P ++   G    ++   ++
Sbjct: 864 NEIVYIIEANPRASRT----VPFVSKATGVPLAKIATQLL 899


>gi|330815486|ref|YP_004359191.1| Acetyl-CoA carboxylase, biotin carboxylase [Burkholderia gladioli
           BSR3]
 gi|327367879|gb|AEA59235.1| Acetyl-CoA carboxylase, biotin carboxylase [Burkholderia gladioli
           BSR3]
          Length = 455

 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 36/222 (16%), Positives = 78/222 (35%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         +  DK+ +KQ +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAERVEQSGFTFIGPRPDTIRMMGDKVSAKQAMIRTGVPCVPGSEG 136

Query: 112 ---LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
                 +  +     +  P +IK   GG   G+ V+  + ++   +     ++       
Sbjct: 137 ALPEDPKEIVKIARAVGYPVIIKAAGGGGGRGMRVVHTEAALVNAVNMTREEAGRAFGNP 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
           Q+ +E+Y++    +   V+ DA  +   +            K          PA  I   
Sbjct: 197 QVYMEKYLENPRHIEIQVLADAHKNALWLGERDCSMQRRHQK-----VIEEAPAPGIARR 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +   +      A + +G  G    +FL+   + + +++E+N 
Sbjct: 252 LIDRIGDRCADACKKMGYLGAGTFEFLY--ENNEFYFIEMNT 291


>gi|224510926|pdb|3G8C|A Chain A, Crystal Stucture Of Biotin Carboxylase In Complex With
           Biotin, Bicarbonate, Adp And Mg Ion
 gi|224510927|pdb|3G8C|B Chain B, Crystal Stucture Of Biotin Carboxylase In Complex With
           Biotin, Bicarbonate, Adp And Mg Ion
          Length = 444

 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 80/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         L  DK+ +   +   GVP  P    
Sbjct: 77  AIHPGYGFLSENANFAEQVERSGFIFIGPKAETIRLMGDKVSAIAAMKKAGVPCVPGSDG 136

Query: 112 -LVNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
            L +    +      I  P +IK   GG   G+ V++ D  +   +     ++ +    D
Sbjct: 137 PLGDDMDKNRAIAKRIGYPVIIKASGGGGGRGMRVVRGDAELAQSISMTRAEAKAAFSND 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+Y++    +   V+ D   +   +A           K          PA  I  +
Sbjct: 197 MVYMEKYLENPRHVEIQVLADGQGNAIYLAERDCSMQRRHQK-----VVEEAPAPGITPE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + + +      A   IG RG    +FLF   + + +++E+N 
Sbjct: 252 LRRYIGERCAKACVDIGYRGAGTFEFLF--ENGEFYFIEMNT 291


>gi|92115821|ref|YP_575550.1| hypothetical protein Nham_0189 [Nitrobacter hamburgensis X14]
 gi|91798715|gb|ABE61090.1| conserved hypothetical protein [Nitrobacter hamburgensis X14]
          Length = 391

 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 37/216 (17%), Positives = 74/216 (34%), Gaps = 21/216 (9%)

Query: 82  SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSS--- 138
            G  +     DK    +      V +  +  +          ++ P V+KP  GG +   
Sbjct: 104 PGWDSLRWLCDKPFLYRRADELNVKIPRTHRLVSVEQAETLAVTFPVVLKPNMGGGNGPF 163

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQ--LLIEQYVDG---IELTCGVMGDASLDVTEIA 193
               V++ D    L      +        +++++ + G    + +   +      VTE  
Sbjct: 164 FKAKVVRADDQAELARAYRDAAGQIGAANVVVQELIPGGGESQFSYAALWHDGQPVTEFT 223

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
             ++  Y  +  Y+   ST V     P  I      LA     ++G  G+   +F  D  
Sbjct: 224 ARRTRQYPVDFGYT---STFVEVVDEPRAIEAARTMLA-----SVGFGGLVEVEFKRDHR 275

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
              +  L++N +P     S +  + A AG     ++
Sbjct: 276 DGSLKLLDVNPRP----WS-WFGLCAAAGVDLGAMM 306


>gi|16800129|ref|NP_470397.1| pyruvate carboxylase [Listeria innocua Clip11262]
 gi|16413519|emb|CAC96291.1| pycA [Listeria innocua Clip11262]
          Length = 1146

 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 35/243 (14%), Positives = 82/243 (33%), Gaps = 25/243 (10%)

Query: 35  QIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSM 91
            +D+  ++  +      D     +H  +G   E+       E   I +         +  
Sbjct: 63  YLDI-ENIIEIAKESGAD----AIHPGYGFLSENIEFARRCEQEGIIFVGPKSKHLDMFG 117

Query: 92  DKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK- 146
           DK+++K+      +PV P     +   +   +       P +IK   GG   G+ V++  
Sbjct: 118 DKIKAKEQALLADIPVIPGSDGPVAGIKEVEEFGEKNGYPLMIKASLGGGGRGMRVVESK 177

Query: 147 ---DQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSY 202
               +S      ++ +    D++ +E+ V +   +   ++GD   ++  +          
Sbjct: 178 EHVKESFERASSEAKAAFGNDEVYVEKCVMNPKHIEVQILGDTHGNIVHLFERDCSIQRR 237

Query: 203 ELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
             K        V P   I  ++   +   A    + +        +FL        +++E
Sbjct: 238 HQK-----VVEVAPCNAITSELRNRICDAAVKLMKNVDYINAGTVEFLV--EGDNFYFIE 290

Query: 262 INV 264
           +N 
Sbjct: 291 VNP 293


>gi|328676104|gb|AEB26974.1| Carbamoyl-phosphate synthase large chain [Francisella cf. novicida
           Fx1]
          Length = 1094

 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 48/278 (17%), Positives = 100/278 (35%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG      L++ G+ V  +         D               SVG ++A  +PD    
Sbjct: 29  SGTQACKVLKEDGYTVFLVNSNPATIMTDPTTADKIFIEPITVESVGKIIARERPDAILP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      ILE   +    +   +   + ++ R  + ++  G+ V  +++
Sbjct: 89  TVGGQTALNCALALDKAGILEKYNVEMLGAKADSIDKAENRERFNKAMAKIGLEVPRNVV 148

Query: 113 VNRFTMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           V       + L  I  P +I+P       G  +    +     +    S +  +++LI++
Sbjct: 149 VQSMEQAYKALEDIGLPAIIRPSFTLGGSGGGIAYTKEEFEKIVKNGLSLSPTNEVLIDE 208

Query: 171 YVDG-IELTCGVMGDASL-DVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEV 227
            + G  E    V+ D +   +   ++   D           +S  V PA  +    Y+ +
Sbjct: 209 SILGWKEYEMEVIRDKADNSIIVCSIENIDPMGIHT----GDSITVAPALTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P   K+  +E+N 
Sbjct: 265 RDASIAVLREIGVETGGSNVQFAVNPKDGKLVVIEMNP 302



 Score = 61.3 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 34/221 (15%), Positives = 85/221 (38%), Gaps = 13/221 (5%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI--SPPYVIKPL 133
            IP   +      L+ D+ R K+++   G+    + +        + ++    P V++P 
Sbjct: 673 NIPILGTDPDKIDLAEDRERFKELLDKVGLKQPLNTIAYTINELKKKIVNVGYPVVVRPS 732

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEI 192
                  + +I   + +   +  +S       +LI++++ D  EL    + D    V   
Sbjct: 733 NVLGGRAMEIIHSQEELDAYIKTNSKCILEGPILIDKFLEDATELDVDALADGGERVFVA 792

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
            + +   +  E    S +S   +P + +  +  +EV++      + +   G+    F + 
Sbjct: 793 GIME---HIEEAGIHSGDSACSIPTRSLSNEQIEEVKQATIKLARELNVIGLMNVQFAY- 848

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
             + +++ +E+N +   T     P +A   G S   +   +
Sbjct: 849 -QNGQLYVIEVNPRASRT----VPFVAKATGNSIANIATKL 884


>gi|319441328|ref|ZP_07990484.1| acyl-CoA carboxylase, alpha subunit [Corynebacterium variabile DSM
           44702]
          Length = 593

 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 35/237 (14%), Positives = 78/237 (32%), Gaps = 20/237 (8%)

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           ++  + A +  D      +G   E+      +    + +            DKM ++Q+ 
Sbjct: 64  ALLDIAARVGADCVHPG-YGFLSENADFARAVADAGMTWIGPTPETIDTLGDKMAARQLA 122

Query: 101 SSCGVPVCPSILVNRFTMDSQHLI----SPPYVIKPLKGGSSLGIIVIKKDQSIPL---- 152
            S G P+ P       + +  H        P VIK   GG   G+ ++ ++  +      
Sbjct: 123 ESVGAPLAPGTSEPLQSWEEAHAFAEEHGLPVVIKAAFGGGGRGLKIVTREDGLDAVEDA 182

Query: 153 ---DLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS 208
                 ++       +  +E++++    +   V+ D    V+ + +          +   
Sbjct: 183 FLSAGREAGEAFGRTECFVEKFLETPRHVEAQVLADTHGHVSVVGL-----RDCSTQRRF 237

Query: 209 LNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
                  PA  +     +++   A     A G  G    +F+       V +LE+N 
Sbjct: 238 QKLVEEAPAPFLTTGQREQITEGARSICAAAGYVGAGTVEFIV-AADGTVSFLEVNT 293


>gi|291558103|emb|CBL35220.1| phosphoribosylamine--glycine ligase [Eubacterium siraeum V10Sc8a]
          Length = 426

 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 46/274 (16%), Positives = 91/274 (33%), Gaps = 47/274 (17%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAG--------------------FKVSQIDVDRS 41
            +++GG   E         A  +AL  +                     F V   D+D  
Sbjct: 3   VLVIGGGGREH--------AIITALAKSKKVDKLYAAPGNGGISKYAECFNVKATDIDGC 54

Query: 42  VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELL---EIPYTHSGILASALSMDKMRSKQ 98
           V L    L+PD  F        +D LV  +++ L             A+ L   K+ SK 
Sbjct: 55  VELA-KKLRPDYVFVA-----PDDPLVMGMVDKLNAEGFKTFGPRANAAILEGSKVFSKA 108

Query: 99  VVSSCGVPVCPSILVNRFTMDSQ---HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL- 154
           ++    +P                     S P VIK        G+I+ K +Q     + 
Sbjct: 109 LMKKYNIPTAAYETFTDADEAIAYIKKQNSFPAVIKCDGLALGKGVIIAKDEQEAENAVR 168

Query: 155 --LQSSSW-NHGDQLLIEQYVDGIELTC-GVMGDASLDVTEIAVPKSDFYSYELKYSSLN 210
             L    +   G ++++E+++ G E+T        ++     ++     Y  +   ++  
Sbjct: 169 SMLLDGKFGKSGSEIVVEEFMTGPEVTVLAFTDGKTVKPMISSMDHKRAYDNDEGLNTGG 228

Query: 211 STHVLPAKI--PLDIYKEVQRLAFLAHQAIGCRG 242
              + P  +  P    + ++++     +A+   G
Sbjct: 229 MGTIAPNPLYTPDKQQECMEKIFLPTIKAMAAEG 262


>gi|288818559|ref|YP_003432907.1| carbamoyl-phosphate synthase large subunit [Hydrogenobacter
           thermophilus TK-6]
 gi|288787959|dbj|BAI69706.1| carbamoyl-phosphate synthase large subunit [Hydrogenobacter
           thermophilus TK-6]
 gi|308752149|gb|ADO45632.1| Carbamoyl-phosphate synthase L chain ATP-binding protein
           [Hydrogenobacter thermophilus TK-6]
          Length = 557

 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 48/289 (16%), Positives = 103/289 (35%), Gaps = 38/289 (13%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI---------DVD------------RSVGLV 45
           G ++E + S   G     AL++ G+ V  +         D                +  +
Sbjct: 21  GQAAEFDYS---GTQACRALKEEGYSVVLVNSNPATIMTDPSVADRTYIEPLTVEVLEEI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   +PD     L G    +  V    + ILE   +    +   A     D+   ++ + 
Sbjct: 78  IKAERPDALLPTLGGQTALNLAVKLYEEGILERYGVELIGASYQAIKKGEDRELFRESMK 137

Query: 102 SCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G+ V  S +V+     M     I  P +++P       G  +    +     L  +  
Sbjct: 138 KIGLKVPESAVVSSLEEGMSVIKSIGFPTILRPAFTLGGTGGAIAYNIEEFKEKLEVALK 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPA 217
            +   Q+L+++ + G  E    V+ D+  +V  +   ++    ++       +S  V PA
Sbjct: 198 TSPIHQVLMDKSLIGWKEFEFEVIRDSKDNVIIVCSIEN----FDPMGVHTGDSITVAPA 253

Query: 218 K-IPLDIYKEVQRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
           + +    Y+ ++       + +G   G S   F  +P +   + +E+N 
Sbjct: 254 QTLTDKEYQILRDACIEVMREVGVDTGGSNIQFAVNPENGDFYVIEMNP 302


>gi|254375167|ref|ZP_04990647.1| carbamoyl-phosphate synthase large chain [Francisella novicida
           GA99-3548]
 gi|151572885|gb|EDN38539.1| carbamoyl-phosphate synthase large chain [Francisella novicida
           GA99-3548]
          Length = 1094

 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 48/278 (17%), Positives = 100/278 (35%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG      L++ G+ V  +         D               SVG ++A  +PD    
Sbjct: 29  SGTQACKVLKEDGYTVFLVNSNPATIMTDPTTADKIFIEPITVESVGKIIARERPDAILP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      ILE   +    +   +   + ++ R  + ++  G+ V  +++
Sbjct: 89  TVGGQTALNCALALDKAGILEKYNVEMLGAKADSIDKAENRERFNKAMAKIGLEVPRNVV 148

Query: 113 VNRFTMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           V       + L  I  P +I+P       G  +    +     +    S +  +++LI++
Sbjct: 149 VQSMEQAYKALEDIGLPAIIRPSFTLGGSGGGIAYTKEEFEKIVKNGLSLSPTNEVLIDE 208

Query: 171 YVDG-IELTCGVMGDASL-DVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEV 227
            + G  E    V+ D +   +   ++   D           +S  V PA  +    Y+ +
Sbjct: 209 SILGWKEYEMEVIRDKADNSIIVCSIENIDPMGIHT----GDSITVAPALTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P   K+  +E+N 
Sbjct: 265 RDASIAVLREIGVETGGSNVQFAVNPKDGKLVVIEMNP 302



 Score = 61.3 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 34/221 (15%), Positives = 85/221 (38%), Gaps = 13/221 (5%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI--SPPYVIKPL 133
            IP   +      L+ D+ R K+++   G+    + +        + ++    P V++P 
Sbjct: 673 NIPILGTDPDKIDLAEDRERFKELLDKVGLKQPLNTIAYTINELKKKIVNVGYPVVVRPS 732

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEI 192
                  + +I   + +   +  +S       +LI++++ D  EL    + D    V   
Sbjct: 733 NVLGGRAMEIIHSQEELDAYIKTNSKCILEGPILIDKFLEDATELDVDALADGGERVFVA 792

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
            + +   +  E    S +S   +P + +  +  +EV++      + +   G+    F + 
Sbjct: 793 GIME---HIEEAGIHSGDSACSIPTRSLSNEQIEEVKQATIKLARELNVIGLMNVQFAY- 848

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
             + +++ +E+N +   T     P +A   G S   +   +
Sbjct: 849 -QNGQLYVIEVNPRASRT----VPFVAKATGNSIANIATKL 884


>gi|145588856|ref|YP_001155453.1| cyanophycin synthetase [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
 gi|145047262|gb|ABP33889.1| cyanophycin synthetase [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
          Length = 730

 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 25/102 (24%), Positives = 49/102 (48%), Gaps = 5/102 (4%)

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIV-IK 145
           +S DK  +K +++S GVP+     V       ++   I  P V+KP+ G    G+ + + 
Sbjct: 222 ISRDKDLTKSLLASAGVPIPEGRTVTSPDDAWEAAQDIGLPVVVKPIDGNHGRGVFINLY 281

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL 187
             Q I      +   + G ++L+E+++ G E    V+G+  +
Sbjct: 282 TQQEIEAAYAVAI--DEGSEVLVERHIVGDEHRLLVVGNKVV 321


>gi|83721099|ref|YP_441709.1| acetyl-CoA carboxylase biotin carboxylase subunit [Burkholderia
           thailandensis E264]
 gi|167580523|ref|ZP_02373397.1| acetyl-CoA carboxylase biotin carboxylase subunit [Burkholderia
           thailandensis TXDOH]
 gi|167618632|ref|ZP_02387263.1| acetyl-CoA carboxylase biotin carboxylase subunit [Burkholderia
           thailandensis Bt4]
 gi|257137878|ref|ZP_05586140.1| acetyl-CoA carboxylase biotin carboxylase subunit [Burkholderia
           thailandensis E264]
 gi|83654924|gb|ABC38987.1| acetyl-CoA carboxylase, biotin carboxylase [Burkholderia
           thailandensis E264]
          Length = 455

 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 34/222 (15%), Positives = 78/222 (35%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         +  DK+ +KQ +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAERVEQSGFTFIGPRPDTIRMMGDKVTAKQTMIRTGVPCVPGSDG 136

Query: 112 ---LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
                 +  +     +  P +IK   GG   G+ V+  + ++   +     ++       
Sbjct: 137 ALPDDPKEIVKIARSVGYPVIIKAAGGGGGRGMRVVHTEAALVNAVNMTREEAGRAFGNP 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
           Q+ +E++++    +   V+ D+  +   +            K          PA  I   
Sbjct: 197 QVYMEKFLENPRHIEIQVLSDSHKNAVWLGERDCSMQRRHQK-----VIEEAPAPGIARR 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +   +      A + +G  G    +FL+   + + +++E+N 
Sbjct: 252 LIDRIGDRCADACKKMGYLGAGTFEFLY--ENNEFYFIEMNT 291


>gi|88796983|ref|ZP_01112573.1| Acetyl/propionyl-CoA carboxylase, alpha subunit [Reinekea sp.
           MED297]
 gi|88779852|gb|EAR11037.1| Acetyl/propionyl-CoA carboxylase, alpha subunit [Reinekea sp.
           MED297]
          Length = 659

 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 81/221 (36%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      +      +    + A      K R+KQ +   GVP+ P    
Sbjct: 76  AVHPGYGFLSENAEFAERVMAAGWTWVGPPVDAMKAMASKARAKQTLEPKGVPMIPGYHG 135

Query: 114 NR---FTMDSQHL-ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
           +     T+ ++ L I  P ++K   GG   G+ V + +  +   L  +          D+
Sbjct: 136 DDQSDATLTAEALTIGFPLLVKASAGGGGKGMKVAESEAELSDALQSARREAENSFGDDR 195

Query: 166 LLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDI 223
           LL+E++ V    +   ++ D   +V              ++          PA  +   +
Sbjct: 196 LLLEKFLVQPRHIEVQILADQHGNVV-----SLFERDCSVQRRHQKVLEEAPAPNLSQSL 250

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +++   A    + IG  G    +F+      + ++LE+N 
Sbjct: 251 REQMWLAAETTAREIGYEGAGTVEFILST-EGEFYFLEMNT 290


>gi|312963094|ref|ZP_07777579.1| carbamoyl-phosphate synthase, large subunit [Pseudomonas
           fluorescens WH6]
 gi|311282605|gb|EFQ61201.1| carbamoyl-phosphate synthase, large subunit [Pseudomonas
           fluorescens WH6]
          Length = 1073

 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 30/196 (15%), Positives = 76/196 (38%), Gaps = 8/196 (4%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYV 129
           LE   +P   +   A   + D+ R +Q+V    +   P+  V        +   I  P V
Sbjct: 653 LEAAGVPIIGTSPDAIDRAEDRERFQQMVERLNLRQPPNATVRSEDEAIRAASKIGYPLV 712

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLD 188
           ++P        + ++ +++ +   L  +   ++   +L++ +++  IE+    + D +  
Sbjct: 713 VRPSYVLGGRAMEIVYEEEELKRYLRDAVKVSNDSPVLLDHFLNCAIEMDVDAVCDGTDV 772

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           V    +   +       +S  ++  + P  +PL I  E++         +G  G+   + 
Sbjct: 773 VIGAIMQHIEQAGV---HSGDSACSLPPYSLPLHIQDEMREQVKKMALELGVVGL--MNV 827

Query: 249 LFDPLSRKVFWLEINV 264
                   ++ +E+N 
Sbjct: 828 QLALQGEDIYVIEVNP 843



 Score = 62.4 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 97/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +              D         ++V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPAMADATYIEPIKWQTVAKIIEKERPDALLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +    + +LE   +    +       + D+ R  + + S G+    S +
Sbjct: 89  TMGGQTALNCALDLEREGVLEKFGVEMIGANADTIDKAEDRSRFDKAMKSIGLACPRSGI 148

Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     +     +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHSMEEANAVLETLGFPCIIRPSFTMGGTGGGIAYNREEFEEICARGLDLSPTKELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + + +   ++   D           +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDPMGVHT----GDSITVAPAQTLTDKEYQIL 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F   P + ++  +E+N 
Sbjct: 265 RNASLAVLREIGVETGGSNVQFGICPDTGRMVVIEMNP 302


>gi|291531319|emb|CBK96904.1| phosphoribosylamine--glycine ligase [Eubacterium siraeum 70/3]
          Length = 426

 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 46/274 (16%), Positives = 91/274 (33%), Gaps = 47/274 (17%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAG--------------------FKVSQIDVDRS 41
            +++GG   E         A  +AL  +                     F V   D+D  
Sbjct: 3   VLVIGGGGREH--------AIITALAKSKKVDKLYAAPGNGGISKYAECFNVKATDIDGC 54

Query: 42  VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELL---EIPYTHSGILASALSMDKMRSKQ 98
           V L    L+PD  F        +D LV  +++ L             A+ L   K+ SK 
Sbjct: 55  VELA-KKLRPDYVFVA-----PDDPLVMGMVDKLNAEGFKTFGPRANAAILEGSKVFSKA 108

Query: 99  VVSSCGVPVCPSILVNRFTMDSQ---HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL- 154
           ++    +P                     S P VIK        G+I+ K +Q     + 
Sbjct: 109 LMKKYNIPTAAYETFTDADEAIAYIKKQNSFPAVIKCDGLALGKGVIIAKDEQEAENAVR 168

Query: 155 --LQSSSW-NHGDQLLIEQYVDGIELTC-GVMGDASLDVTEIAVPKSDFYSYELKYSSLN 210
             L    +   G ++++E+++ G E+T        ++     ++     Y  +   ++  
Sbjct: 169 SMLLDGKFGKSGSEIVVEEFMTGPEVTVLAFTDGKTVKPMISSMDHKRAYDNDEGLNTGG 228

Query: 211 STHVLPAKI--PLDIYKEVQRLAFLAHQAIGCRG 242
              + P  +  P    + ++++     +A+   G
Sbjct: 229 MGTIAPNPLYTPDKQQECMEKIFLPTIKAMAAEG 262


>gi|237727346|ref|ZP_04557827.1| glutathione biosynthesis gshAB [Bacteroides sp. D4]
 gi|255008798|ref|ZP_05280924.1| bifunctional glutamate--cysteine ligase/glutathione synthetase
           [Bacteroides fragilis 3_1_12]
 gi|313146542|ref|ZP_07808735.1| bifunctional glutamate-cysteine ligase/glutathione synthetase
           [Bacteroides fragilis 3_1_12]
 gi|229434202|gb|EEO44279.1| glutathione biosynthesis gshAB [Bacteroides dorei 5_1_36/D4]
 gi|313135309|gb|EFR52669.1| bifunctional glutamate-cysteine ligase/glutathione synthetase
           [Bacteroides fragilis 3_1_12]
          Length = 764

 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 45/119 (37%), Gaps = 5/119 (4%)

Query: 83  GILASALSM-DKMRSKQVVSSCGVPVC---PSILVNRFTMDSQHLISPPYVIKPLKGGSS 138
               S L M +K+ +K+V+   G+ V              D +     P VIKP      
Sbjct: 492 DSYVSVLMMENKVVTKKVLERAGISVPGGYEYTSPEAGMADYRLYAGKPVVIKPKSTNFG 551

Query: 139 LGIIVIK-KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK 196
           LGI ++K              ++ H + +LIE+++ G E    ++ D  + +       
Sbjct: 552 LGITILKHNYDETDFKAALQIAFEHDNTVLIEKFIPGREFRIFIINDEVVGILHRVPAN 610


>gi|224024527|ref|ZP_03642893.1| hypothetical protein BACCOPRO_01252 [Bacteroides coprophilus DSM
           18228]
 gi|224017749|gb|EEF75761.1| hypothetical protein BACCOPRO_01252 [Bacteroides coprophilus DSM
           18228]
          Length = 389

 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 51/248 (20%), Positives = 84/248 (33%), Gaps = 27/248 (10%)

Query: 33  VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
            S +D D ++  V+A   PD+    +     E       LE  +I    S    +     
Sbjct: 49  FSMLDGD-ALDKVVAKYHPDIIVPEIEAIRTERLY---HLEKEDIQVVPSARAVNYTMNR 104

Query: 93  KMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150
           K          G+          F    ++   I  P VIKPL   S  G  + K  + +
Sbjct: 105 KAIRDLAAKELGLKTAKYFYATSFEELKEAAEKIGYPCVIKPLMSSSGKGQSIAKGPEDL 164

Query: 151 PLDLLQSSSWNHGD--QLLIEQYVDGIE----LTCGVMGDASLDVTEIA-VPKSDFYSYE 203
                     + GD  +L++E++V        LT       +L    I  V K   Y   
Sbjct: 165 SYSWEYGCMGSRGDIKELIVEEFVKFDSEITLLTVTQKNGPTLFCPPIGHVQKGGDY--- 221

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
                       PA I  +   E Q +A    +A+   G+   +F     +  V++ E++
Sbjct: 222 -------RESFQPAHIAPEHLAEAQHMAAKVTEALTGYGLWGVEFFLSHENG-VYFSELS 273

Query: 264 VQP---GM 268
            +P   GM
Sbjct: 274 PRPHDTGM 281


>gi|167756066|ref|ZP_02428193.1| hypothetical protein CLORAM_01586 [Clostridium ramosum DSM 1402]
 gi|237734052|ref|ZP_04564533.1| carbamoyl-phosphate synthase large subunit [Mollicutes bacterium
           D7]
 gi|167704058|gb|EDS18637.1| hypothetical protein CLORAM_01586 [Clostridium ramosum DSM 1402]
 gi|229382878|gb|EEO32969.1| carbamoyl-phosphate synthase large subunit [Coprobacillus sp. D7]
          Length = 1072

 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 54/312 (17%), Positives = 110/312 (35%), Gaps = 47/312 (15%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL   G+K+  +              DV          +  ++   +PD    
Sbjct: 29  SGTQACKALRGLGYKIVLVNSNPATIMTDPETADVTYIEPLNVERLTQIIEKERPDALLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G    +   +     +LE   +      + A     D++  K+ +   G+ +  S +
Sbjct: 89  NLGGQSALNLCSELNEAGVLEKYNVQVLGVQVDAIERGEDRLEFKKEMDKLGIEMARSEV 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     +  P V++P       G  ++   + +   + +    +   Q LIE+
Sbjct: 149 STTVEEALAIAERLGYPVVVRPAYTMGGAGGGLVYNVEELKTVVSRGLQASLVGQCLIEE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQ 228
            + G  EL   V+ DA+ ++  +   ++      L   + +S    P   I  ++   ++
Sbjct: 209 SILGWEELEVEVVRDANNNMITVCFIEN---IDPLGVHTGDSFCSAPMLTISQEVQDRLK 265

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI--------FPE---- 276
             AF   ++IG  G +   F  DP + ++  +EIN +   T  S         FP     
Sbjct: 266 DQAFRIVESIGVIGGTNVQFAHDPETDRIVVIEINPR---TSRSSALASKATGFPIALVS 322

Query: 277 MAAYAGYSFREL 288
               AG +  ++
Sbjct: 323 AMLAAGLTMEDI 334



 Score = 60.1 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 31/201 (15%), Positives = 77/201 (38%), Gaps = 10/201 (4%)

Query: 68  VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-ILVN-RFTMDSQHLIS 125
           + A L+   +    +      ++ D+     ++    +P+  S + VN    ++    I 
Sbjct: 643 LAAQLKKNGVNILGTTPETIDMAEDRDLFNAMMEKLEIPMPESGMAVNVEEALEIAKRIG 702

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGD 184
            P +++P       G+ V+  D+S+   +  +        +LI++++ + +E     + D
Sbjct: 703 YPLMVRPSYVLGGRGMEVVYDDESLEQYMKAAVGVTPDRPILIDRFLNNAMECEADAISD 762

Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGI 243
                    +   +           +S  +LP+K IP+   + ++       + +  RG+
Sbjct: 763 GETVFVPAVMEHIELAGIHS----GDSACILPSKHIPIRHLETIKEYTKKIAKEMNVRGL 818

Query: 244 SRSDFLFDPLSRKVFWLEINV 264
              +  +     KV+ LE N 
Sbjct: 819 --MNMQYAIADDKVYVLEANP 837


>gi|332525742|ref|ZP_08401889.1| cyanophycin synthetase [Rubrivivax benzoatilyticus JA2]
 gi|332109299|gb|EGJ10222.1| cyanophycin synthetase [Rubrivivax benzoatilyticus JA2]
          Length = 861

 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 26/116 (22%), Positives = 51/116 (43%), Gaps = 6/116 (5%)

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGSSLG 140
           G +A +++ DK  SK++++S GVPV     V        +   I  P V+KP  G    G
Sbjct: 195 GAVAESIAQDKDLSKRLLASAGVPVPRGRPVTDLEDGWAAAMEIGLPVVVKPRDGNQGKG 254

Query: 141 IIV-IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195
           + V +            +   +   ++++EQ++ G +    V+G+  +  +    P
Sbjct: 255 VTVNVTDRAQFEAAYRTA---DEIGEVMVEQFLPGHDFRLLVVGEKLVAASRRDPP 307


>gi|315281806|ref|ZP_07870357.1| pyruvate carboxylase [Listeria marthii FSL S4-120]
 gi|313614552|gb|EFR88145.1| pyruvate carboxylase [Listeria marthii FSL S4-120]
          Length = 672

 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 35/243 (14%), Positives = 82/243 (33%), Gaps = 25/243 (10%)

Query: 35  QIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSM 91
            +D+  ++  +      D     +H  +G   E+       E   I +         +  
Sbjct: 63  YLDI-ENIIEIAKESGAD----AIHPGYGFLSENIEFARRCEQEGIIFVGPKSKHLDMFG 117

Query: 92  DKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK- 146
           DK+++K+      +PV P     +   +   +       P +IK   GG   G+ V++  
Sbjct: 118 DKIKAKEQALLADIPVIPGSNGPVAGIKEVEEFGEKNGYPLMIKASLGGGGRGMRVVESK 177

Query: 147 ---DQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSY 202
               +S      ++ +    D++ +E+ V +   +   ++GD   ++  +          
Sbjct: 178 EHVKESFERASSEAKAAFGNDEVYVEKCVMNPKHIEVQILGDTHGNIVHLFERDCSIQRR 237

Query: 203 ELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
             K        V P   I  ++   +   A    + +        +FL        +++E
Sbjct: 238 HQK-----VVEVAPCNAITSELRNRICDAAVKLMKNVDYINAGTVEFLV--EGDDFYFIE 290

Query: 262 INV 264
           +N 
Sbjct: 291 VNP 293


>gi|300781656|ref|ZP_07091510.1| acyl-CoA carboxylase, alpha subunit [Corynebacterium genitalium
           ATCC 33030]
 gi|300533363|gb|EFK54424.1| acyl-CoA carboxylase, alpha subunit [Corynebacterium genitalium
           ATCC 33030]
          Length = 583

 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 28/201 (13%), Positives = 63/201 (31%), Gaps = 18/201 (8%)

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI----SPPYVI 130
             + +      +  L  DK+ +++V    G P+ P         +           P  I
Sbjct: 106 AGLTWIGPTPESIELLGDKIAARRVAVEVGAPLAPGTEDPIGDWEEARAFAEEHGMPIAI 165

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQS-----SSWNHGDQLLIEQYVD-GIELTCGVMGD 184
           K   GG   G+ V+  +  I      +      ++    +  +E+++     +   V+ D
Sbjct: 166 KAAYGGGGRGLKVVHDEADIEDAFASAGREAKEAFGRA-ECYVEKFLTHPRHVEAQVLAD 224

Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGI 243
              +V  +            +          PA  +  +    ++  A    +A    G 
Sbjct: 225 THGNVAVLGT-----RDCSTQRRFQKLIEEAPAPFLTDEQRAGIEDGAREICRAANYVGA 279

Query: 244 SRSDFLFDPLSRKVFWLEINV 264
              +++       V +LE+N 
Sbjct: 280 GTVEYIVSE-DGTVSFLEVNT 299


>gi|212639629|ref|YP_002316149.1| carbamoyl phosphate synthase large subunit [Anoxybacillus
           flavithermus WK1]
 gi|212561109|gb|ACJ34164.1| Carbamoylphosphate synthase large subunit [Anoxybacillus
           flavithermus WK1]
          Length = 1074

 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 53/297 (17%), Positives = 113/297 (38%), Gaps = 36/297 (12%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL++ G+KV  ++ +                       V  V+   +PD     L G  G
Sbjct: 47  ALKEEGYKVILVNSNPATIMTDTEIADKVYMEPLTLEFVSRVIRKERPDAILPTLGGQTG 106

Query: 64  EDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
            +  V+     +LE   +    + + A   + D+ + + +++  G PV  S +V+     
Sbjct: 107 LNLAVELAKAGVLEECGVEILGTKLEAIEKAEDREQFRALMNELGEPVPESAIVHSLQEA 166

Query: 120 SQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IE 176
                 I  P +++P       G  +   ++ +   +      +   Q L+E+ + G  E
Sbjct: 167 YAFVSQIGYPVIVRPAFTLGGTGGGICTNEEELADIVSSGLKMSPVHQCLLEKSIAGYKE 226

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAH 235
           +   VM D+  +   I V   +     +   + +S  V P++ +    Y+ ++  +    
Sbjct: 227 IEYEVMRDSKDNA--IVVCNMENID-PVGIHTGDSIVVAPSQTLSDREYQLLRNASLRII 283

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +A+G  G        DP S + + +E+N  P ++  S     +   GY   +L   +
Sbjct: 284 RALGIEGGCNVQLALDPHSFQYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAKI 336



 Score = 64.0 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/218 (12%), Positives = 77/218 (35%), Gaps = 14/218 (6%)

Query: 68  VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLIS 125
           + A L    +    + +     + ++ + ++ ++  G+P             +     I 
Sbjct: 651 LAAELAARGVRILGTSLEDLDRAENRDKFERTLAQLGIPQPRGKTAFSVEEAVHIAKDIG 710

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            P +++P        + ++ K++ +   +  +   N    +LI++Y+ G E+    + D 
Sbjct: 711 YPVLVRPSYVLGGRAMEIVYKEEELLHYMEHAVKVNPQHPVLIDRYLIGKEIEVDAISDG 770

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGIS 244
                   +   +           +S  V P + +  D+ +++        + +   G+ 
Sbjct: 771 EDVFIPGIMEHIERAGVHS----GDSIAVYPPQTLTKDMKQQIVDYTIALAKGLRIVGLL 826

Query: 245 RSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277
              F+       V+ LE+N       P ++ ++  P  
Sbjct: 827 NIQFVL--YDGDVYVLEVNPRSSRTVPFLSKITNVPMA 862


>gi|161510967|ref|YP_088980.2| acetyl-CoA carboxylase biotin carboxylase subunit [Mannheimia
           succiniciproducens MBEL55E]
          Length = 448

 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 81/221 (36%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E+    +         L  DK+ +   +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAEQVEVSGFTFIGPTADVIRLMGDKVSAINAMKKAGVPCVPGSDG 136

Query: 112 ---LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
                        + I  P +IK   GG   G+ V++ D+S+   +     ++ +  + D
Sbjct: 137 PLGTDMVKNKQIANRIGYPVIIKASGGGGGRGMRVVRNDESLEESIAMTKAEAKAAFNND 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            + +E+Y++    +   V+ D   +   +A           K             I  +I
Sbjct: 197 MVYMEKYLENPRHVEIQVIADTHGNAVYLAERDCSMQRRHQKVL----EEAPAPGITEEI 252

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +++ +    A   IG RG    +FL+     K +++E+N 
Sbjct: 253 RRDIGQRCANACIEIGYRGAGTFEFLY--EDGKFYFIEMNT 291


>gi|332704238|ref|ZP_08424326.1| Pyruvate carboxylase [Desulfovibrio africanus str. Walvis Bay]
 gi|332554387|gb|EGJ51431.1| Pyruvate carboxylase [Desulfovibrio africanus str. Walvis Bay]
          Length = 1240

 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 37/223 (16%), Positives = 80/223 (35%), Gaps = 22/223 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---- 109
            +H  +G   ED       +   I +      A     +K+  +++    GVPV P    
Sbjct: 89  AIHPGWGFAAEDDTFPQKCDEAGIIFIGPTSEAMRKLGNKVEVRKLAKEIGVPVVPGSEN 148

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
           S+ +      ++  +  P ++K   GG   GI  I  D+ +     ++S+         +
Sbjct: 149 SVSIPEARRLAKE-MGYPIMLKAEGGGGGRGISEIYTDEQLESAFHKASALAQASFGNPR 207

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP---AKIPL 221
           L +E+ +     +   V+ D   +V        D     ++        V P     +  
Sbjct: 208 LYVEKLLTNIRHIEIQVIADKYGNVFAF-----DERDCTVQRKHQKLIEVTPSPWPGMTD 262

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           ++  ++++ A     A+    +   +FL D      + +E+N 
Sbjct: 263 ELRTQLKQYATDLVSAVKYHSLCTVEFLVDGQ-GTPYLIEVNT 304


>gi|289704863|ref|ZP_06501280.1| phosphoribosylglycinamide synthetase, ATP-grasp (A) domain protein
           [Micrococcus luteus SK58]
 gi|289558359|gb|EFD51633.1| phosphoribosylglycinamide synthetase, ATP-grasp (A) domain protein
           [Micrococcus luteus SK58]
          Length = 618

 Score = 67.1 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 71/220 (32%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+      +    + +      A     DK+ ++Q+ +  G P+ P    
Sbjct: 98  AVHPGYGFLSENADFARAVTDAGLVWIGPPAEAIDRLGDKVSARQLATKVGAPLAPGTTS 157

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL----DLLQSSSWNHGDQ 165
            +      +        P  IK   GG   GI V +  + IP      + ++ +     +
Sbjct: 158 PVTGTEEVVAFADEFGLPVAIKAAYGGGGRGIKVARTREEIPEFYESAVREAVAAFGRGE 217

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             +E+++D    +    + D   DV  I+           K             +  +  
Sbjct: 218 CFVERFLDKPRHVETQCLADVHGDVVVISTRDCSLQRRNQK----LVEEAPAPFLTDEQN 273

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +   +    Q  G  G    +FL       + +LE+N 
Sbjct: 274 ARLVESSKAILQEAGYVGAGTCEFLV-GQDGTISFLEVNT 312


>gi|330991216|ref|ZP_08315168.1| Biotin carboxylase [Gluconacetobacter sp. SXCC-1]
 gi|329761709|gb|EGG78201.1| Biotin carboxylase [Gluconacetobacter sp. SXCC-1]
          Length = 450

 Score = 66.7 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 78/220 (35%), Gaps = 18/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+      +E   I +         +  DK+ +K  + + GVP+ P    
Sbjct: 77  AIHPGYGFLSENADFAETVEAHGITFIGPTAEHIRMMGDKITAKTTMMALGVPLVPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
            +       +    +  P +IK   GG   G+ V   +  +         ++ +    D+
Sbjct: 137 ALESLEQAREVAAKVGYPVLIKAAAGGGGRGMKVAPTEADLEEAWSVARTEARAAFGNDE 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+Y+D    +   +M D   +V               K          PA +     
Sbjct: 197 VYLEKYLDKPRHIELQIMADTHGNVVHFGERDCSLQRRHQKLLEEAG---SPA-LTAAQR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            E+ ++A  A   +G R     +FL+     +  ++E+N 
Sbjct: 253 DEIGQIATSALTRLGYRNAGTLEFLY--QDGQFCFIEMNT 290


>gi|315634651|ref|ZP_07889935.1| ribosomal protein S6 modification protein [Aggregatibacter segnis
           ATCC 33393]
 gi|315476599|gb|EFU67347.1| ribosomal protein S6 modification protein [Aggregatibacter segnis
           ATCC 33393]
          Length = 305

 Score = 66.7 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 43/229 (18%), Positives = 98/229 (42%), Gaps = 29/229 (12%)

Query: 71  ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---ISPP 127
             + L IP   + + A   + DK  S Q++   G+ V  S L+    +D+ H    I  P
Sbjct: 87  YFQALGIPCL-NHVDAFRNARDKWLSLQMLLQHGIAVPDS-LLAGMEVDANHAVQHIGAP 144

Query: 128 YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV---DGIELTCGVMGD 184
            ++K L G   +G+I+ ++ QS     +  +       +L++++V   +G +L C V+G 
Sbjct: 145 TILKTLTGSQGIGVILAERAQSAVS--ILDTLKQSDVPVLLQEFVAESNGTDLRCFVIGG 202

Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244
             +   +      +F +   + ++              + ++ +++A  A +A+G   ++
Sbjct: 203 RVVAAMQRVGQNGEFRANCHRGATAEKVI---------LTEQEKQIALNATKALGL-DVA 252

Query: 245 RSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR-ELLLWM 292
             D +          LE+N  PG+        +   +G +   +++L++
Sbjct: 253 GVDLIRSV--NGPLVLEVNASPGL------EMIEKTSGINIALQMILYL 293


>gi|312140465|ref|YP_004007801.1| pyruvate carboxylase [Rhodococcus equi 103S]
 gi|311889804|emb|CBH49121.1| pyruvate carboxylase [Rhodococcus equi 103S]
          Length = 1135

 Score = 66.7 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 37/215 (17%), Positives = 73/215 (33%), Gaps = 15/215 (6%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT- 117
           +G   E+  + A  E   I +         L+ +K R+     + G+PV  S   +    
Sbjct: 83  YGFLSENPDLAAACEANGITFVGPSAEVLELTGNKARAIAAAKAAGLPVLASSEPSSDVE 142

Query: 118 --MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS-----SSWNHGDQLLIEQ 170
             + +   +  P  +K + GG   G+  + +   +   +  +     S++      L + 
Sbjct: 143 ALLAASEDMEFPVFVKAVAGGGGRGMRRVAERAQLREAIEAASREAESAFGDPTVFLEQA 202

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQR 229
            VD   +   ++ D   +V              L+        + PA  +   +   +  
Sbjct: 203 VVDPRHIEVQILADGEGNVI-----HLFERDCSLQRRHQKVIELAPAPNLDPALRDRICA 257

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            A    + IG R     +FL D     VF  E+N 
Sbjct: 258 DAVAFAKQIGYRCAGTVEFLLDTRGNHVFI-EMNP 291


>gi|251791904|ref|YP_003006624.1| acetyl-CoA carboxylase biotin carboxylase subunit [Aggregatibacter
           aphrophilus NJ8700]
 gi|247533291|gb|ACS96537.1| acetyl-CoA carboxylase, biotin carboxylase [Aggregatibacter
           aphrophilus NJ8700]
          Length = 448

 Score = 66.7 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 81/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+      +E     +         L  DK+ +   +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAEQVESSGFIFIGPTADVIRLMGDKVSAINAMKKAGVPCVPGSDG 136

Query: 111 --ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
                     +    I  P +IK   GG   G+ V++ + ++   +     ++ +  + D
Sbjct: 137 PLTSDITRNKEIAKRIGYPIIIKASGGGGGRGMRVVRSEDALEESIAMTKAEAKAAFNND 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+Y++    +   V+ D   +   +A           K          PA  I  +
Sbjct: 197 MVYMEKYLENPRHVEIQVLADTHGNAVYLAERDCSMQRRHQK-----VVEEAPAPGITEE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +++      A   IG RG    +FL+   + + +++E+N 
Sbjct: 252 VRRDIGSRCAKACVEIGYRGAGTFEFLY--ENGEFYFIEMNT 291


>gi|157372651|ref|YP_001480640.1| acetyl-CoA carboxylase biotin carboxylase subunit [Serratia
           proteamaculans 568]
 gi|157324415|gb|ABV43512.1| acetyl-CoA carboxylase, biotin carboxylase [Serratia proteamaculans
           568]
          Length = 449

 Score = 66.7 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 39/222 (17%), Positives = 82/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         L  DK+ +   +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAEQIERSGFIFIGPKAETIRLMGDKVSAINAMKKAGVPCVPGSDG 136

Query: 112 -LVNRFTMD--SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
            L +    +      I  P +IK   GG   G+ V++ D+ +   +     ++ +  + D
Sbjct: 137 PLTDDMDKNRAFAKRIGYPVIIKASGGGGGRGMRVVRSDKDLEQSISMTKAEAKAAFNND 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+Y++    +   ++ D   +   +A           K          PA  I  +
Sbjct: 197 MVYMEKYLENPRHIEIQILADGQGNAIYLAERDCSMQRRHQK-----VVEEAPAPGITSE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + + +      A   IG RG    +FL+   + + +++E+N 
Sbjct: 252 MRRYIGERCSKACVEIGYRGAGTFEFLY--ENGEFYFIEMNT 291


>gi|71082750|ref|YP_265469.1| carbamoyl-phosphate synthase large chain [Candidatus Pelagibacter
           ubique HTCC1062]
 gi|71061863|gb|AAZ20866.1| Carbamoyl-phosphate synthase large chain [Candidatus Pelagibacter
           ubique HTCC1062]
          Length = 1074

 Score = 66.7 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 54/278 (19%), Positives = 105/278 (37%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL+D G+KV  I         D                +  +L   KPD    
Sbjct: 29  SGTQACKALKDEGYKVILINSNPATIMTDPGVADKTYIEPITLEVLEKILKKEKPDAILP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  ++     IL+  +I    +   A + + D+ + ++ +   G+ +  S +
Sbjct: 89  TMGGQTALNLAMEAEKKGILKKYKIELIGANSKAISNAEDRKKFRKNMLDIGLDLPKSKV 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           V+  R    +   I  P +I+P      LG  + K ++     +      +  +Q+LIE+
Sbjct: 149 VSHIRDAAKALKQIGLPAIIRPAFTLGGLGGGIAKTEKEYLKIVKDGLHESPVNQILIEE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPA-KIPLDIYKEV 227
            ++G  E    V+ D   +   I   ++ D           +S  V PA  +    Y+ +
Sbjct: 209 CLEGWKEFEMEVVRDKKDNCIIICSIENIDPMGIHT----GDSITVAPALTLTDKEYQVM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P   ++  +E+N 
Sbjct: 265 RNASIACLRKIGVETGGSNVQFAINPKDGRMVIIEMNP 302



 Score = 60.5 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 36/267 (13%), Positives = 96/267 (35%), Gaps = 33/267 (12%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELL 75
           AL+D+GF+   I         D D S  L    LK +  +N++     + G +  I+   
Sbjct: 587 ALKDSGFETIMINCNPETVSTDYDTSDRLYFEPLKEEYVYNII-KKEQQKGNLVGIIAQF 645

Query: 76  E---------------IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTM 118
                           +P   +   +  L+ D+ R ++++    +    S +    +  +
Sbjct: 646 GGQTPIRLAKFLHDNKLPILGTQYTSIDLAEDRDRFRKLLDRLKLKQAESGIAKTYKQAI 705

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIEL 177
                I  P +++P        + ++ +   +   + ++      + +LI++++   +E+
Sbjct: 706 QIAEKIGLPLMVRPSYVLGGRAMEIVHEKSQLKNFVEEAFKAAEDNPILIDKFISHAMEV 765

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
               + D         +   +       +S  ++  + P  I   +  E++        A
Sbjct: 766 DVDAISDGKQVFVAGIMQHIEEAGI---HSGDSACCLPPVSIKPKLISEIEIQTKKLALA 822

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINV 264
           +  +G     F     + +++ +E+N 
Sbjct: 823 LNVKGFMNIQFAI--KNDEIYVIEVNP 847


>gi|330720802|gb|EGG99012.1| Biotin carboxylase of acetyl-CoA carboxylase [gamma proteobacterium
           IMCC2047]
          Length = 446

 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 31/222 (13%), Positives = 74/222 (33%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+      +E     +         +  DK+ + + +    VP  P    
Sbjct: 77  AIHPGYGFLAENADFAEQVENSGFTFVGPKADTIRMMGDKVAAIKAMIEAKVPTVPGSNG 136

Query: 111 --ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
                +  T+     I  P +IK   GG   G+  +  +  +         ++ +    D
Sbjct: 137 PLTDDDERTLKIAREIGYPVIIKAAAGGGGRGMRTVHTEAVLLKSKHITQAEAKAAFGDD 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E++++    +   V+ D   +               ++          PA  +   
Sbjct: 197 TVYLEKFLENPRHVEVQVLADGQGNAI-----HLGDRDCSMQRRHQKVVEEAPAPGVNEK 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             ++V +    A   +  RG    +FL+     + +++E+N 
Sbjct: 252 ARQDVFQACIDACINMNYRGAGTFEFLY--EDGRFYFIEMNT 291


>gi|325092290|gb|EGC45600.1| pyruvate carboxylase [Ajellomyces capsulatus H88]
          Length = 1192

 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 91/222 (40%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
           ++H  +G   E+      +E   + +            DK+ ++++   CGVPV P    
Sbjct: 124 LIHPGYGFLSENAEFARNVEKAGLVFVGPTPDTIDTLGDKVSARRLAIKCGVPVVPGTPG 183

Query: 113 -VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS-----SSWNHGD 164
            V RF            P +IK   GG   G+ V+++ +++     ++     S++    
Sbjct: 184 PVERFEEVKAFTDQYGFPIIIKAAFGGGGRGMRVVREQETLQDAFERATSEAKSAFG-NG 242

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLD 222
            + +E+++D    +   ++GD   ++  +           ++        V PA  +P+D
Sbjct: 243 TVFVERFLDKPKHIEVQLLGDNHGNIVHLYE-----RDCSVQRRHQKVVEVAPAKDLPVD 297

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +   +   A    +++  R    ++FL D  +R  +++EIN 
Sbjct: 298 VRDTILADAVKLAKSVNYRNAGTAEFLVDQQNR-YYFIEINP 338


>gi|302185421|ref|ZP_07262094.1| carbamoyl phosphate synthase large subunit [Pseudomonas syringae
           pv. syringae 642]
          Length = 1073

 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 28/196 (14%), Positives = 74/196 (37%), Gaps = 8/196 (4%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYV 129
           LE   +P   +   A   + D+ R + +V    +   P+  V        +   I  P V
Sbjct: 653 LEAAGVPIIGTSPDAIDRAEDRERFQHMVERLNLRQPPNATVRSEDEAIRAAAKIGYPLV 712

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLD 188
           ++P        + ++ ++  +   L ++   ++   +L++ +++  IE+    + D +  
Sbjct: 713 VRPSYVLGGRAMEIVYQEDELKRYLREAVQVSNDSPVLLDHFLNCAIEMDVDAVCDGTDV 772

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           V    +   +       +S  ++  + P  +P  I  E++         +G  G+   + 
Sbjct: 773 VIGAIMQHIEQAGV---HSGDSACSLPPYSLPAHIQDEMREQVKKMALELGVVGL--MNV 827

Query: 249 LFDPLSRKVFWLEINV 264
                   ++ +E+N 
Sbjct: 828 QLALQGEDIYVIEVNP 843



 Score = 62.8 bits (152), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 96/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +              D         ++V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPAMADATYIEPIKWQTVAKIIEKERPDALLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +    + +LE   +    +       + D+ R  + + S G+    S +
Sbjct: 89  TMGGQTALNCALDLEREGVLEKFGVEMIGANADTIDKAEDRSRFDKAMKSIGLACPRSGI 148

Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     +     +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHSMEEANAVLEKLGFPCIIRPSFTMGGTGGGIAYNREEFEEICARGLDLSPTKELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D   + +   ++   D           +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKKDNCIIVCSIENFDPMGVHT----GDSITVAPAQTLTDKEYQIL 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F   P + ++  +E+N 
Sbjct: 265 RNASLAVLREIGVETGGSNVQFGICPNTGRMVVIEMNP 302


>gi|257463852|ref|ZP_05628239.1| acetyl-CoA carboxylase, biotin carboxylase [Fusobacterium sp. D12]
 gi|317061385|ref|ZP_07925870.1| biotin carboxylase [Fusobacterium sp. D12]
 gi|313687061|gb|EFS23896.1| biotin carboxylase [Fusobacterium sp. D12]
          Length = 447

 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 36/219 (16%), Positives = 75/219 (34%), Gaps = 17/219 (7%)

Query: 58  LHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI--- 111
           +H  +G   E+     I    +I +    +       DK  ++    +  VPV       
Sbjct: 78  IHPGYGFLSENAKFAEICMSHDITFIGPRVDCIQNMGDKATARATAIANEVPVSRGTGIL 137

Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQL 166
             V       +  I  P +IK   GG   G+ +   ++ +  ++  +            +
Sbjct: 138 QTVEEAVKKVEEEIHYPVMIKATAGGGGKGMRIAFSEEELRENMAAAQQEALAAFGNGDV 197

Query: 167 LIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
            IE+Y++    +   ++GD   +V  ++           K             +P  I  
Sbjct: 198 YIEKYIEEPRHVEVQILGDNYGNVIHLSTRDCSIQRRHQKMI----EEAPAFSVPFKIQN 253

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           E+   A    +AI        +FL D  + + +++E+N 
Sbjct: 254 EMGEAAVRLAKAIQYNSAGTLEFLVDK-NNQYYFMEMNT 291


>gi|123443993|ref|YP_001007963.1| acetyl-CoA carboxylase biotin carboxylase subunit [Yersinia
           enterocolitica subsp. enterocolitica 8081]
 gi|122090954|emb|CAL13836.1| biotin carboxylase [Yersinia enterocolitica subsp. enterocolitica
           8081]
          Length = 449

 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 39/222 (17%), Positives = 82/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         L  DK+ +   +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAEQVERSGFIFIGPRAETIRLMGDKVSAINAMKKAGVPCVPGSDG 136

Query: 112 LVNRFT---MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
            ++  T         I  P +IK   GG   G+ V++ D+ +   +     ++ +  + D
Sbjct: 137 PLDDDTTKNKAFAKRIGYPVIIKASGGGGGRGMRVVRHDKDLEQSINMTRAEAKAAFNND 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+Y++    +   ++ D   +   +A           K          PA  I  +
Sbjct: 197 MVYMEKYLENPRHIEIQILADGQGNAIYLAERDCSMQRRHQK-----VVEEAPAPGITSE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + + +      A   IG RG    +FL+   + + +++E+N 
Sbjct: 252 MRRYIGERCAKACVEIGYRGAGTFEFLY--ENGEFYFIEMNT 291


>gi|262278056|ref|ZP_06055841.1| carbamoyl-phosphate synthase large subunit [Acinetobacter
           calcoaceticus RUH2202]
 gi|262258407|gb|EEY77140.1| carbamoyl-phosphate synthase large subunit [Acinetobacter
           calcoaceticus RUH2202]
          Length = 1076

 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 29/196 (14%), Positives = 74/196 (37%), Gaps = 8/196 (4%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYV 129
           LE    P   +   A   + D+ R +Q++    +    + +V            +  P V
Sbjct: 653 LEEAGTPIIGTSPDAIDRAEDRERFQQMIQRLQLRQPNNSIVKSAEEGISEAAKVGYPLV 712

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  ++ +   L ++   ++   +L+++++ D  E+    + D    
Sbjct: 713 VRPSYVLGGRAMEIVYNEEELKRYLREAVQASNEAPVLLDRFLDDATEVDVDCVSDGKDV 772

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           V    +   +       +S  ++  + P  +  +I  E++R      + +G  G+    F
Sbjct: 773 VIGGIMQHIEQAGI---HSGDSACSIPPYSLSKEIQDEMRRQTVAMAKELGVVGLMNVQF 829

Query: 249 LFDPLSRKVFWLEINV 264
                   V+ LE+N 
Sbjct: 830 AV--KGDDVYILEVNP 843



 Score = 61.7 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 92/278 (33%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D              ++V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPSMADATYIEPITWQTVAQIIEKERPDAVLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      +L    +    +   A   + D+      +   G+    + +
Sbjct: 89  TMGGQTALNCALALDEHGVLAKYNVELIGASKEAIEKAEDRKLFDIAMRKIGLECPKAAI 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +  Q     P +I+P       G  +    +       +    +   QLLI++
Sbjct: 149 AETMEEALTIQSRFGFPVIIRPSFTMGGSGGGIAYNREEFLEICERGFDLSPTHQLLIDE 208

Query: 171 YVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + + +   A+   D           +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCAIENFDPMGVHT----GDSITVAPAQTLTDKEYQLM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P   ++  +E+N 
Sbjct: 265 RNASVAVLREIGVETGGSNVQFGINPKDGRMVVIEMNP 302


>gi|229824730|ref|ZP_04450799.1| hypothetical protein GCWU000182_00078 [Abiotrophia defectiva ATCC
           49176]
 gi|229791059|gb|EEP27173.1| hypothetical protein GCWU000182_00078 [Abiotrophia defectiva ATCC
           49176]
          Length = 1073

 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 48/292 (16%), Positives = 106/292 (36%), Gaps = 34/292 (11%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH-----------GNFGE 64
           A   AG++   I         D D +  L    L P+   NV+            G    
Sbjct: 581 AFAKAGYETIIINNNPETVSTDFDIADKLYFEPLTPEDVRNVVELEKPYGAVVQFGGQTA 640

Query: 65  DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTMDSQH 122
            GL +A++E+  +    +       + D+     +++  G+P      +      ++  +
Sbjct: 641 IGLTKALMEM-GVKILGTSAEDVDAAEDRELFDNILNETGIPRASGGTVFTAEEAVEVAN 699

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            +  P +++P       G+ +   D  I   +   +       +L+++Y+ G EL    +
Sbjct: 700 RLGYPVLVRPSYVLGGAGMRIAISDSDIREYINIINRNVQEHPILVDKYLMGEELEVDAV 759

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCR 241
            D      +I +P    +       S +S  V P+  I  ++ K ++       +++   
Sbjct: 760 CDGE----DILIPGIMQHIERAGIHSGDSISVYPSQNISEELIKRIEDYTRKLAKSLHVI 815

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           G+    F+      +V+ +E+N +   T     P ++   G    EL   ++
Sbjct: 816 GLVNIQFII--YENEVYVIEVNPRSSRT----VPYISKVTGIPVVELAAKVI 861



 Score = 57.4 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 45/286 (15%), Positives = 99/286 (34%), Gaps = 33/286 (11%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQID-------VDRSVGL--------------V 45
           G ++E + +   G     +L++ G +V  ++        D+ +                +
Sbjct: 21  GQAAEFDYA---GTQACRSLKEEGIEVVLVNSNPATIMTDKDIADKVYIEPLNVAVVKKI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   KPD     L G  G +  ++      L+   +    +  L    + D++  K  + 
Sbjct: 78  IKEEKPDSILPTLGGQAGLNLAMELEESGFLKENNVKLIGTTALTIKKAEDRLEFKNTME 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
               PV  S +V      ++    I  P V++P       G  + + + S+ L       
Sbjct: 138 KLKEPVAASTIVEDVEAAVEFAKEIGYPIVVRPAYTLGGSGGGIAEDETSLRLICENGLR 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   Q LIE+ + G  E+   VM D   +   I V   +       ++  +        
Sbjct: 198 LSRVGQCLIERSIAGWKEIEYEVMRDGRGN--CITVCNMENLDPVGVHTGDSIVVAPSQT 255

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +    ++ ++  A      +G  G     +  +P + +   +E+N 
Sbjct: 256 LSDKEHQMLRTSALNIIDELGITGGCNVQYALNPETFEYCVIEVNP 301


>gi|15602956|ref|NP_246028.1| acetyl-CoA carboxylase biotin carboxylase subunit [Pasteurella
           multocida subsp. multocida str. Pm70]
 gi|12721430|gb|AAK03175.1| AccC [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 448

 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 40/225 (17%), Positives = 86/225 (38%), Gaps = 27/225 (12%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+      +E     +         L  DK+ + + +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAEQVERSGFIFIGPTADVIRLMGDKVSAIEAMKKSGVPCVPGSDG 136

Query: 111 -----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWN 161
                ++ N+   +    I  P +IK   GG   G+ V++ + S+   +     ++ +  
Sbjct: 137 PVGSDMVKNK---EIAKRIGYPVIIKASGGGGGRGMRVVRDEASLEESIAMTKAEAKAAF 193

Query: 162 HGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-I 219
           + D + +E+Y++    +   V+ D   +   +A           K          PA  I
Sbjct: 194 NNDMVYMEKYLENPRHIEIQVLADTHGNAIYLAERDCSMQRRHQK-----VVEEAPAPGI 248

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             ++ +++      A   IG RG    +FL+   + + +++E+N 
Sbjct: 249 SDEVRRDIGERCAKACVEIGYRGAGTFEFLY--ENGEFYFIEMNT 291


>gi|330958060|gb|EGH58320.1| carbamoyl phosphate synthase large subunit [Pseudomonas syringae
           pv. maculicola str. ES4326]
          Length = 1073

 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 28/196 (14%), Positives = 74/196 (37%), Gaps = 8/196 (4%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYV 129
           LE   +P   +   A   + D+ R + +V    +   P+  V        +   I  P V
Sbjct: 653 LEAAGVPIIGTSPDAIDRAEDRERFQHMVERLNLRQPPNATVRSEDEAIRAAAKIGYPLV 712

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLD 188
           ++P        + ++ ++  +   L ++   ++   +L++ +++  IE+    + D +  
Sbjct: 713 VRPSYVLGGRAMEIVYQEDELKRYLREAVQVSNDSPVLLDHFLNCAIEMDVDAVCDGTDV 772

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           V    +   +       +S  ++  + P  +P  I  E++         +G  G+   + 
Sbjct: 773 VIGAIMQHIEQAGV---HSGDSACSLPPYSLPAHIQDEMREQVKKMALELGVVGL--MNV 827

Query: 249 LFDPLSRKVFWLEINV 264
                   ++ +E+N 
Sbjct: 828 QLALQGEDIYVIEVNP 843



 Score = 63.2 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 96/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +              D         ++V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPAMADATYIEPIKWQTVAKIIEKERPDALLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +    + +LE   +    +       + D+ R  + + S G+    S +
Sbjct: 89  TMGGQTALNCALDLEREGVLEKFGVEMIGANADTIDKAEDRSRFDKAMKSIGLACPRSGI 148

Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     +     +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHSMEEANAVLEKLGFPCIIRPSFTMGGTGGGIAYNREEFEEICARGLDLSPTKELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D   + +   ++   D           +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKKDNCIIVCSIENFDPMGVHT----GDSITVAPAQTLTDKEYQIL 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F   P + ++  +E+N 
Sbjct: 265 RNASLAVLREIGVETGGSNVQFGICPDTGRMVVIEMNP 302


>gi|312897591|ref|ZP_07757008.1| carbamoyl-phosphate synthase, large subunit [Megasphaera
           micronuciformis F0359]
 gi|310621224|gb|EFQ04767.1| carbamoyl-phosphate synthase, large subunit [Megasphaera
           micronuciformis F0359]
          Length = 1065

 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 49/287 (17%), Positives = 109/287 (37%), Gaps = 35/287 (12%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI-----------DVDRSV----------GLV 45
           G ++E + +   G     AL++ G +V  I           D+   V            V
Sbjct: 19  GQAAEFDYA---GTQACRALKEEGLEVVLINSNPATIMTDEDIADRVYIEPITLDYVAEV 75

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   +PD     L G  G +  ++     +LE   +    + + A   + D+   K+ + 
Sbjct: 76  IEKERPDGLLATLGGQVGLNMAIELAENGVLEKYGVKLLGTKLSAIEEAEDRELFKKAMK 135

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
               PV  S +    + ++D  + I  P +++P       G  +   +  + +   +   
Sbjct: 136 DINQPVPESDIFENVQESVDFANSIGYPVIVRPAYTLGGTGGGIAHDEDELFMIATRGIK 195

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   Q+L+E+ V G  E+   VM D + +   I   ++      +   + +S  V P++
Sbjct: 196 LSPIHQILVERSVAGWKEVEYEVMRDKADNCVIICNMEN---IDPVGVHTGDSIVVAPSQ 252

Query: 219 -IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +    Y+ ++  +    + +   G     +  DP S + + +E+N 
Sbjct: 253 TLNDLQYQLLRTASVDIIRRLKIEGGCNVQYALDPNSNRYYVIEVNP 299



 Score = 62.4 bits (151), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 26/199 (13%), Positives = 72/199 (36%), Gaps = 15/199 (7%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQHLISPPYV 129
           L    +    + +     + D+ +   +++   +P     +    T  M     +  P +
Sbjct: 644 LAARGVNVLGTSVAGMDRAEDREKFDDLLTKLDIPRPAGRIATSDTEAMKVASELEFPLI 703

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS--- 186
           ++P        + ++  +  +   L ++   +    +LI++Y+ G EL    + D +   
Sbjct: 704 VRPSYVLGGRAMEIVYTESELERYLREAVIASPDHPILIDEYMVGRELEVDAVSDGTDVF 763

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISR 245
           +      V ++  +S        +S  V P  ++  D+  ++          +  +G   
Sbjct: 764 IPGIMEQVERAGVHS-------GDSIAVYPPQQLDRDMIDQIVDYTTRITLELQVKGSVN 816

Query: 246 SDFLFDPLSRKVFWLEINV 264
             F+      K++ +E+N 
Sbjct: 817 IQFVL--ARGKLYIIEVNP 833


>gi|300121715|emb|CBK22290.2| Propionyl-CoA carboxylase subunit ? [Blastocystis hominis]
          Length = 688

 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 41/220 (18%), Positives = 76/220 (34%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+      LE   I +   G  A     DK+ SK +     V   P    
Sbjct: 123 AVHPGYGFLSENWRFAETLEKEGIIWCGPGKYAIEAMGDKIGSKILAVKAKVNTIPGFNG 182

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS----IPLDLLQSSSWNHGDQ 165
            I  +   +   + I  P +IK   GG   G+ +   D+       L   ++ S    D+
Sbjct: 183 EINSDEEVLRIANDIGYPVMIKASAGGGGKGMRIAWNDKEALSGFHLSKQEAKSAFGDDR 242

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+Y++    +   V+GD   +       +        K             +  +  
Sbjct: 243 MFIEKYIEEPRHIEIQVLGDKFGNYCAFPERECSIQRRNQK----VIEESPSVLLDEETR 298

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             + + A +  +A+        +FL D      ++LE+N 
Sbjct: 299 TAMGKQACMMAKAVNYCSAGTVEFLCDKHKN-FYFLEMNT 337


>gi|282883158|ref|ZP_06291757.1| pyruvate carboxylase subunit A [Peptoniphilus lacrimalis 315-B]
 gi|281296970|gb|EFA89467.1| pyruvate carboxylase subunit A [Peptoniphilus lacrimalis 315-B]
          Length = 459

 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 33/219 (15%), Positives = 76/219 (34%), Gaps = 17/219 (7%)

Query: 58  LHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
           +H  +G   E      ++   +I +            +K  + + +   GVP  P    N
Sbjct: 78  IHPGYGFLSESYYFANLVRKNKIKFIGPDPETIKNMGNKSLAIKTMRENGVPTVPGSDGN 137

Query: 115 RFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGDQL 166
              ++        IS P ++K   GG   GI  +   + +    PL  +++ +    D +
Sbjct: 138 VKNIEEAIKIGEKISYPLLLKASSGGGGKGIRRVDSREELVEKFPLVKMEAKASFKDDSI 197

Query: 167 LIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
            +E+ ++    +   ++ D   ++  +            K             I   + +
Sbjct: 198 YMEKLIENPRHIEVQILCDDFSNILCLGERNCSIQRENQKMI----EESPSPGISQGLRE 253

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           ++   A  + +A   +     +FL D      ++LE+N 
Sbjct: 254 KLYDAARKSAKACAYKNAGTVEFLVDKDEN-FYFLEMNT 291


>gi|218288883|ref|ZP_03493134.1| phosphoribosylaminoimidazole carboxylase, ATPase subunit
           [Alicyclobacillus acidocaldarius LAA1]
 gi|218240972|gb|EED08149.1| phosphoribosylaminoimidazole carboxylase, ATPase subunit
           [Alicyclobacillus acidocaldarius LAA1]
          Length = 395

 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 34/196 (17%), Positives = 74/196 (37%), Gaps = 19/196 (9%)

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYVIKPLKGG-SSL 139
           G    A    ++R K  ++  G+PV P   ++      ++        V+K  +GG    
Sbjct: 104 GSELLATCQHRVREKSTLAQHGLPVTPFAPISSMDDLDEALERFGGRMVVKTCRGGYDGK 163

Query: 140 GIIVIKKDQSIPL-------DLLQSSSWNHGD-QLLIEQYVD-GIELTCGVMGDASLDVT 190
           G  +++  + +          + +  +    D  L+ E YV    EL+  V  +   +V 
Sbjct: 164 GQWMVRSREDLEKYAQDWARAIDRHRAAGFDDHPLIAEAYVPFEGELSVIVARNRRGEVR 223

Query: 191 EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
                ++    + L  S      ++PA+ P D+    + +A    +A+G  G+   +   
Sbjct: 224 AFPPAENIHKRHILHMS------IVPARYPEDVIARAEDIARQVAEALGVIGLIAVEMFV 277

Query: 251 DPLSRKVFWLEINVQP 266
                ++   E+  +P
Sbjct: 278 -AHGGEILINELAPRP 292


>gi|68249559|ref|YP_248671.1| acetyl-CoA carboxylase biotin carboxylase subunit [Haemophilus
           influenzae 86-028NP]
 gi|68057758|gb|AAX88011.1| biotin carboxylase [Haemophilus influenzae 86-028NP]
          Length = 448

 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 40/225 (17%), Positives = 85/225 (37%), Gaps = 27/225 (12%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+      +E     +         L  DK+ + + +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAEQVERSGFTFIGPTADVIRLMGDKVSAIKAMKKAGVPCVPGSDG 136

Query: 111 -----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWN 161
                I  N+   +    I  P +IK   GG   G+ V++ + ++   +     ++ +  
Sbjct: 137 PVGNDIAKNK---EIAKRIGYPIIIKASGGGGGRGMRVVRSEDALEESIAMTKAEAKAAF 193

Query: 162 HGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-I 219
           + D + +E+Y++    +   V+ D   +   +A           K          PA  I
Sbjct: 194 NNDMVYMEKYLENPRHVEIQVLSDTHGNAVYLAERDCSMQRRHQK-----VVEEAPAPGI 248

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             ++ +++      A   IG RG    +FL+   + + +++E+N 
Sbjct: 249 TEEVRRDIGSRCAKACVEIGYRGAGTFEFLY--ENGEFYFIEMNT 291


>gi|50119220|ref|YP_048387.1| acetyl-CoA carboxylase biotin carboxylase subunit [Pectobacterium
           atrosepticum SCRI1043]
 gi|49609746|emb|CAG73180.1| biotin carboxylase [Pectobacterium atrosepticum SCRI1043]
          Length = 447

 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 40/225 (17%), Positives = 81/225 (36%), Gaps = 27/225 (12%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      +E     +         L  DK+ +   +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAEQVERSGFIFIGPRADTIRLMGDKVSAISAMKKAGVPCVPG--- 133

Query: 114 NRFTMDSQ--------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWN 161
           +   +D            I  P +IK   GG   G+ V++ D+ +   +     ++ +  
Sbjct: 134 SDGPLDGDMDKNRAFGKRIGYPVIIKASGGGGGRGMRVVRSDKELEQSINMTRAEAKAAF 193

Query: 162 HGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-I 219
           + D + +E+Y++    +   VM D   +   +A           K          PA  I
Sbjct: 194 NNDMVYMEKYLENPRHVEIQVMADGQGNAVYLAERDCSMQRRHQK-----VVEEAPAPGI 248

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             ++ + +      A   I  RG    +FL+   + + +++E+N 
Sbjct: 249 TDELRRNIGERCAKACIDINYRGAGTFEFLY--ENGEFYFIEMNT 291


>gi|325288860|ref|YP_004265041.1| carbamoyl-phosphate synthase large subunit [Syntrophobotulus
           glycolicus DSM 8271]
 gi|324964261|gb|ADY55040.1| carbamoyl-phosphate synthase large subunit [Syntrophobotulus
           glycolicus DSM 8271]
          Length = 1062

 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 50/318 (15%), Positives = 115/318 (36%), Gaps = 46/318 (14%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQID---------------------VDRSVGLV 45
           G ++E + +   G     AL + G +   ++                         +  +
Sbjct: 20  GQAAEFDYA---GTQACRALREEGLETVLVNSNPATIMTDAEVADKIYIEPLTIEFLERI 76

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   KPD     + G  G +   Q     IL+   +    + + + + + D+   + ++ 
Sbjct: 77  IEKEKPDGLLPTMGGQTGLNLAFQLSQSGILQRCGVTLLGTPLDSISKAEDREHFRNLMH 136

Query: 102 SCGVPVCPSILVNR--FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
               P+  S +V+     +     I  P +++P       G  +    +++        +
Sbjct: 137 EIRQPIPESTIVSEVGEAVAFAEEIGYPLIVRPAFTLGGTGGGIAGDRKTLEEIAASGIN 196

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   Q+LIE+ V G  E+   V+ D     + IAV   +       ++  +S  V P +
Sbjct: 197 ASMIGQILIERSVAGWKEIEFEVLRDGMD--SCIAVCHMENMDPVGVHT-GDSIVVAPCQ 253

Query: 219 -IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS----- 272
            +     + ++  +F    A+G  G     F  +P++ + + +E+N  P ++  S     
Sbjct: 254 TLTDKEIQMLRTASFNIVSALGIEGGCNVQFALNPVNDEYYVIEVN--PRLSRSSALASK 311

Query: 273 ----IFPEMAAYAGYSFR 286
                  ++AA  G  + 
Sbjct: 312 ATGYPIAKIAAKIGIGYT 329



 Score = 54.4 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 45/298 (15%), Positives = 99/298 (33%), Gaps = 33/298 (11%)

Query: 18  SGKACASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLV 68
           S  A   AL  AG +   I         D D S  L    L  +    VL+    E  +V
Sbjct: 573 SVHAV-KALRKAGVESIIINNNPETVSTDFDTSDRLYFEPLTLEDVSEVLNKEKPEGVIV 631

Query: 69  Q-------AILELL---EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
           Q        + + L         + +  +  + ++     V+   G        V+    
Sbjct: 632 QFGGQTAIGLCKGLAARGYRILGTTVEDTDRAEERGIFDHVLQELGAKRPQGGCVSTVEE 691

Query: 119 DSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
             +    I  P +++P        + ++     I   +  + +   G Q+ ++QY++G E
Sbjct: 692 AEKLSEKIGFPLIVRPSYVLGGRAMQIVYDRADIKRIVQNAFAEFPGQQIWMDQYLEGKE 751

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAH 235
           +    + D         +   +           +S  V P + +   +   +  L     
Sbjct: 752 VEVDAISDGETVCIPGIMEHLERAGVHS----GDSIAVYPPQTLAQKMENRISDLTVSIA 807

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +++  +G+    ++      +V+ LE+N +   T     P ++   G    +L   ++
Sbjct: 808 RSLRIKGLLNIQYVIYK--DEVYVLEVNPRSSRT----VPFLSKVTGVPVVDLATRVI 859


>gi|295396137|ref|ZP_06806320.1| carbamoyl-phosphate synthase, large subunit [Brevibacterium
           mcbrellneri ATCC 49030]
 gi|294971078|gb|EFG46970.1| carbamoyl-phosphate synthase, large subunit [Brevibacterium
           mcbrellneri ATCC 49030]
          Length = 1089

 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 41/241 (17%), Positives = 96/241 (39%), Gaps = 13/241 (5%)

Query: 33  VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLV----QAILELLEIPYTHSGILASA 88
           V  ID    +  ++A  +PD     L G    +  +      +LE   +    + + A  
Sbjct: 66  VEPIDP-EVIEAIIAKERPDALLPTLGGQTALNAAINLHKAGVLEKYGVELIGADVDAIE 124

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
              ++ + K VV +CG  V  S + +     +++   +  P V++P      LG  +   
Sbjct: 125 RGENRQQFKGVVETCGAEVARSRIAHTMDECLEAAQELGYPMVVRPSFTMGGLGSGMAYN 184

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELK 205
           +  +          +  +++L+E+ + G  E    +M D + +V  +   ++      + 
Sbjct: 185 EDDLRRIAGDGLHDSLTNEVLLEESILGWKEYELELMRDRNDNVVVVCSIENFD---PVG 241

Query: 206 YSSLNSTHVLPAKIPLDIY-KEVQRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEIN 263
             + +S  V PA    D+  ++++ +     + +G   G     F  +P + ++  +E+N
Sbjct: 242 VHTGDSITVAPAMTLTDVEFQKMRDIGIAIIREVGVDTGGCNIQFAVNPDNGRIVVIEMN 301

Query: 264 V 264
            
Sbjct: 302 P 302



 Score = 50.9 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/201 (15%), Positives = 75/201 (37%), Gaps = 10/201 (4%)

Query: 68  VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ--HLIS 125
           + A L+   +P   +   A  L+ D+    +V+   G+          +         I 
Sbjct: 651 LAARLKEAGVPVLGTQPEAIDLAEDRGEFGRVLHQAGLLAPKHGTATTYEEAEAIAESIG 710

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGD 184
            P +++P       G+ ++  +  +   +  ++  +    +L+++++ D +E+    + D
Sbjct: 711 YPVLVRPSYVLGGRGMQIVYDNAQLRSYMDSATEVSPTRPVLVDRFLEDAVEIDVDALFD 770

Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGI 243
                    +   +    E    S +S  VLPA  +  ++ K V+       +  G RG+
Sbjct: 771 GEDLYIGGVMEHIE----EAGIHSGDSACVLPAITLGENVLKRVRSATRAIAEGTGVRGL 826

Query: 244 SRSDFLFDPLSRKVFWLEINV 264
               F     +  ++ +E N 
Sbjct: 827 LNIQFAV--AADVLYVIEANP 845


>gi|293394172|ref|ZP_06638472.1| acetyl-CoA carboxylase [Serratia odorifera DSM 4582]
 gi|291423150|gb|EFE96379.1| acetyl-CoA carboxylase [Serratia odorifera DSM 4582]
          Length = 449

 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 82/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         L  DK+ +   +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAEQVERSGFIFIGPKAETIRLMGDKVSAINAMKKAGVPCVPGSDG 136

Query: 112 -LVNRFTMD--SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
            L +    +      I  P +IK   GG   G+ V++ D+ +   +     ++ +  + D
Sbjct: 137 PLTDDMDKNRAFAKRIGYPVIIKASGGGGGRGMRVVRSDKDLEQSISMTKAEAKAAFNND 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+Y++    +   V+ D   +   +A           K          PA  I  +
Sbjct: 197 MVYMEKYLENPRHIEIQVLADGQGNAIYLAERDCSMQRRHQK-----VVEEAPAPGITNE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + + +      A   IG RG    +FL+   + + +++E+N 
Sbjct: 252 MRRYIGERCSKACVEIGYRGAGTFEFLY--ENGEFYFIEMNT 291


>gi|292656488|ref|YP_003536385.1| carbamoyl-phosphate synthase large subunit [Haloferax volcanii DS2]
 gi|291370643|gb|ADE02870.1| carbamoyl-phosphate synthase, large subunit [Haloferax volcanii
           DS2]
          Length = 1082

 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 47/303 (15%), Positives = 105/303 (34%), Gaps = 41/303 (13%)

Query: 18  SGKACASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGL- 67
           S  A   AL D G     +         D D S GL    +  +   +V+      DG+ 
Sbjct: 602 SVHAV-QALRDMGIDAHVVNNNPETVSTDYDTSDGLFFEPITAEEVADVIEAIDA-DGVM 659

Query: 68  --------------VQAILELLEIPY--THSGILASALSMDKMRSKQVVSSCGVPVCP-- 109
                         +++ L+   +      + I A  L+ D+ R  +++   G+      
Sbjct: 660 LQFGGQTSVNIGHPLESELDRRGVDCEILGTTIDAMDLAEDRDRFNRLMDDLGILQPEGG 719

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
           S       +D  + +  P +++P        + ++  D  +   + ++   +    +LI+
Sbjct: 720 SATSEEEALDLANDLGYPVLVRPSYVLGGRAMEIVHSDADLKEYIEEAVRVSPDKPILID 779

Query: 170 QYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           +++ DG+EL    + D    +    +   +       +S  ++  + P  +  +    V+
Sbjct: 780 EFLADGVELDVDAVSDGEDVLIGGVMEHVETAGV---HSGDSACMIPPRSLDDETMARVR 836

Query: 229 RLAFLAHQAIGCRGISRSDFLF---DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285
            +      A+   G+          +  S  V+ LE N +   T     P ++   G   
Sbjct: 837 EVTEDIASALDTVGLMNVQLAVKRNEDGSNDVYVLEANPRSSRT----VPFVSKATGVPI 892

Query: 286 REL 288
            +L
Sbjct: 893 AKL 895



 Score = 55.5 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 51/306 (16%), Positives = 104/306 (33%), Gaps = 55/306 (17%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQID---------------------VDRSVGLV 45
           G ++E + S   G     AL + G +V  ++                        ++  +
Sbjct: 30  GQAAEFDYS---GAQACRALREEGARVVLVNSNPATIMTDPEMADKVYIEPITTEAISEI 86

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   +PD     L G  G +   +     +LE  ++    + +     + D+   +Q + 
Sbjct: 87  IERERPDGVIAGLGGQTGLNVTAELAEEGVLEKFDVDIMGTPLDTIYATEDRDLFRQRME 146

Query: 102 SCGVPVCPSI-----------------LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
             G PV  S                  LV R       +   P + +        G  V+
Sbjct: 147 KIGQPVPKSTTISLEEGEAVENITEEALVERVEDSVDAVGDLPVISRTTYTLGGSGSGVV 206

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKS-DFYSY 202
            +   +   + +    +   ++LI + + G +EL   VM DA      I   ++ D    
Sbjct: 207 HEMDELVSRVRKGLRLSRNSEVLITESISGWVELEYEVMRDADDSCIIICNMENIDPMGI 266

Query: 203 ELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL---SRKVF 258
                   ST V P++ IP + ++E++  A    + +G +G     F +        +  
Sbjct: 267 HT----GESTVVTPSQVIPDEGHQEMRDAALQVIRELGIQGGCNIQFAWHDDGTPGGEYR 322

Query: 259 WLEINV 264
            +E+N 
Sbjct: 323 VVEVNP 328


>gi|209524823|ref|ZP_03273369.1| cyanophycin synthetase [Arthrospira maxima CS-328]
 gi|209494702|gb|EDZ95011.1| cyanophycin synthetase [Arthrospira maxima CS-328]
          Length = 895

 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 53/121 (43%), Gaps = 4/121 (3%)

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT---MDSQHLISPPYVIKPLKGG 136
           + +GIL   L+ DK  +KQV+   G+PV    ++  F       + +   P  IKPL G 
Sbjct: 207 SSTGILGVELACDKEGTKQVLRDAGIPVPRGTVIRYFEDLSDAIEDVGGYPIAIKPLDGN 266

Query: 137 SSLGIIV-IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195
              GI + + + ++       +S  +    ++IE++  G +    V+    + V+E    
Sbjct: 267 HGRGITLDVTRWETAQTAYDAASEASKTRSVIIERFYKGRDHRVLVVNGRVVAVSERVPA 326

Query: 196 K 196
            
Sbjct: 327 H 327


>gi|121593082|ref|YP_984978.1| cyanophycin synthetase [Acidovorax sp. JS42]
 gi|120605162|gb|ABM40902.1| cyanophycin synthetase [Acidovorax sp. JS42]
          Length = 727

 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 25/105 (23%), Positives = 51/105 (48%), Gaps = 5/105 (4%)

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIV-IK 145
           ++ DK  +K++++SCGVPV    +V       +    I  P  +KP  G  + G+ + + 
Sbjct: 217 IAQDKDFTKRLLASCGVPVPEGQIVRNADEAWEVAQEIGLPVTVKPSDGNHARGVTLELS 276

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190
           ++  I      +     G  +++E+++DG+E    V+G   +  T
Sbjct: 277 READIKAAFALAEP--EGSDVIVEKFIDGVEHRLLVVGGKVVAAT 319


>gi|332992150|gb|AEF02205.1| hypothetical protein ambt_03265 [Alteromonas sp. SN2]
          Length = 305

 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 82/223 (36%), Gaps = 22/223 (9%)

Query: 77  IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM----DSQHLISPPYVIKP 132
           IP  +S   + +LS DK+R+   +S  G+      L N        ++        V KP
Sbjct: 77  IPCLNS-FESFSLSEDKLRTSHRLSRAGIRTPDYRLCNTKDKPMLKNTIREWGGRLVYKP 135

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG-DQLLIEQYVDGIELTCGVMGDASLDVTE 191
             G    G+ ++K +    LD+L             +E++++  ++T   +     +   
Sbjct: 136 TDGWG--GMGIVKVEDERSLDMLIPFLDQTNIPHFYVERFIN-YDMTDYRIDIVDGEFVG 192

Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
               ++    ++   +S  S              E+  LA  A +  G   I+  D ++D
Sbjct: 193 CYGRQAPKDDWKTNVTSGGSVIRREPN------DELVALAIKAAKVTGL-DIAGVDVIYD 245

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE-LLLWMV 293
               +   LE+N  P        PE    AG +F E  +  +V
Sbjct: 246 QEHEEYVVLEVNGIPAFAT----PEQ-EAAGLTFNEGKIERIV 283


>gi|320040249|gb|EFW22182.1| carbamoyl-phosphate synthase [Coccidioides posadasii str. Silveira]
          Length = 1174

 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 58/291 (19%), Positives = 106/291 (36%), Gaps = 41/291 (14%)

Query: 6   GGIS----SEREVSLSSGKACASALEDAGF--------------------KVSQIDVDRS 41
           GG+S     E + S   G     AL++AG                     +V  + V   
Sbjct: 105 GGLSIGQAGEFDYS---GSQALKALKEAGVKSVLINPNIATIQTDHKLADEVYYLPVTPE 161

Query: 42  -VGLVLAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRS 96
            V  V+   KPD  F    G    +  VQ     I E   +    + I     S D+   
Sbjct: 162 YVTHVIEKEKPDGIFLSFGGQTALNLGVQMNRMGIFEKYGVKVLGTSIKTLETSEDRDLF 221

Query: 97  KQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154
            + ++   +P+  SI V+     +++   I  P +++       LG       + +    
Sbjct: 222 AKALNEIDIPIAESIAVSTVDEALEAADKIGYPIIVRSAYALGGLGSGFAANAEELK--N 279

Query: 155 LQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTH 213
           L S S     Q+L+E+ + G  E+   V+ DA+ +   I V   + +   L   + +S  
Sbjct: 280 LSSRSLTLAPQILVEKSLKGWKEVEYEVVRDAANN--CITVCNMENFD-PLGIHTGDSIV 336

Query: 214 VLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
           V P++ +  + Y  ++  A    + +G  G     +   P       +E+N
Sbjct: 337 VAPSQTLSDEEYHMLRTAAIKIVRHLGVVGECNVQYALQPDGLDYRVIEVN 387



 Score = 52.0 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/204 (14%), Positives = 67/204 (32%), Gaps = 22/204 (10%)

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVI 130
           E        +       + D+ +  Q + S GV       +            +  P ++
Sbjct: 735 ETGGAHVLGTDPKDIDRAEDRHKFSQTLDSIGVDQPAWKELTSVAEAEAFADSVGYPVLV 794

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL----TCGVMGDAS 186
           +P    S   + VI+    +   L+ +S  +    ++I ++++G +          G   
Sbjct: 795 RPSYVLSGAAMSVIRSQGELHDKLVSASDVSPDHPVVITKFIEGAQEIDIDAVASGGKLL 854

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG---- 242
           L      V  +  +S +       +  + P  +   I   V+ +A    +A    G    
Sbjct: 855 LHAVSEHVEAAGVHSGDA------TLVLPPVNLDESIMARVKEIAEKVAKAFSITGPFNM 908

Query: 243 -ISRSDFLFDPLSRKVFW--LEIN 263
            I ++D   +P   +     +E N
Sbjct: 909 QIIKAD---NPDGGEPQLKVIECN 929


>gi|300122043|emb|CBK22617.2| Propionyl-CoA carboxylase subunit ? [Blastocystis hominis]
 gi|300122548|emb|CBK23117.2| Propionyl-CoA carboxylase subunit ? [Blastocystis hominis]
 gi|300122873|emb|CBK23880.2| Propionyl-CoA carboxylase subunit ? [Blastocystis hominis]
 gi|300123976|emb|CBK25247.2| Propionyl-CoA carboxylase subunit ? [Blastocystis hominis]
 gi|300123981|emb|CBK25252.2| Propionyl-CoA carboxylase subunit ? [Blastocystis hominis]
          Length = 667

 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 41/220 (18%), Positives = 76/220 (34%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+      LE   I +   G  A     DK+ SK +     V   P    
Sbjct: 102 AVHPGYGFLSENWRFAETLEKEGIIWCGPGKYAIEAMGDKIGSKILAVKAKVNTIPGFNG 161

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS----IPLDLLQSSSWNHGDQ 165
            I  +   +   + I  P +IK   GG   G+ +   D+       L   ++ S    D+
Sbjct: 162 EINSDEEVLRIANDIGYPVMIKASAGGGGKGMRIAWNDKEALSGFHLSKQEAKSAFGDDR 221

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+Y++    +   V+GD   +       +        K             +  +  
Sbjct: 222 MFIEKYIEEPRHIEIQVLGDKFGNYCAFPERECSIQRRNQK----VIEESPSVLLDEETR 277

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             + + A +  +A+        +FL D      ++LE+N 
Sbjct: 278 TAMGKQACMMAKAVNYCSAGTVEFLCDKHKN-FYFLEMNT 316


>gi|255263989|ref|ZP_05343331.1| carbamoyl-phosphate synthase, large subunit [Thalassiobium sp.
           R2A62]
 gi|255106324|gb|EET48998.1| carbamoyl-phosphate synthase, large subunit [Thalassiobium sp.
           R2A62]
          Length = 1116

 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 48/285 (16%), Positives = 101/285 (35%), Gaps = 37/285 (12%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAI---- 71
           AL +AG++   +         D D S  L    L  +    +L     E G +  +    
Sbjct: 630 ALTEAGYETIMVNCNPETVSTDYDTSDRLYFEPLTFEHVLEILR-VEQEKGTLHGVIVQF 688

Query: 72  -----------LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTM 118
                      LE   IP   +   A  L+ D+ R + +V   G+      +   +   +
Sbjct: 689 GGQTPLKLANALEAEGIPILGTTPDAIDLAEDRERFQDLVEKLGLKQPGGAIASTDAQAL 748

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   I  P VI+P        + +++    +   + ++   +    +L++ Y+ G    
Sbjct: 749 AAAGDIGFPLVIRPSYVLGGRAMEIVRDMAQLERYIAEAVVVSGDSPVLLDSYLTG---A 805

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELK-YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
             +  DA  D T + V     +  E   +S  ++  + P  +  +   E++        A
Sbjct: 806 IEIDVDAICDGTSVHVAGIMQHIEEAGVHSGDSACSLPPYSLSAETIAELRVQTEKLALA 865

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAG 282
           +   G+    F     + +++ +E+N +   T     P +A   G
Sbjct: 866 LNVVGLMNIQFAV--KNGEIYLIEVNPRASRT----VPFVAKAVG 904



 Score = 54.0 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 46/297 (15%), Positives = 97/297 (32%), Gaps = 54/297 (18%)

Query: 18  SGKACASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLA------------FN 56
           SG     AL + G++V  +         D   +    +  + PD+               
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPGMADATYIEPITPDVVAQIIEKERPDALLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G  G +  +      +L+   +    +   A  ++ D+   ++ +   G+    + +
Sbjct: 89  TMGGQTGLNTSLALEEMGVLDKYNVEMIGAKRDAIEMAEDRKLFREAMGRLGIENPKATI 148

Query: 113 VNRFT---------------------MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
           V   T                     MD+   I  P +I+P       G  V    +   
Sbjct: 149 VTAPTKNKDAIRVTDKFDINAGLSAAMDALEEIGLPAIIRPAFTLGGTGGGVANNREEYE 208

Query: 152 LDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKS-DFYSYELKYSSL 209
                    +   Q+LI++ + G  E    V+ D + +   I   ++ D           
Sbjct: 209 HFCRSGMEASPMAQILIDESLLGWKEYEMEVVRDTADNAIIICAIENVDPMGVHT----G 264

Query: 210 NSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +S  V PA  +    Y+ ++  +    + IG   G S   +  +P   ++  +E+N 
Sbjct: 265 DSITVAPALTLTDKEYQIMRNHSINVLREIGVETGGSNVQWAVNPADGRMVVIEMNP 321


>gi|303321562|ref|XP_003070775.1| carbamoyl-phosphate synthase arginine-specific large chain,
           putative [Coccidioides posadasii C735 delta SOWgp]
 gi|240110472|gb|EER28630.1| carbamoyl-phosphate synthase arginine-specific large chain,
           putative [Coccidioides posadasii C735 delta SOWgp]
          Length = 1174

 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 58/291 (19%), Positives = 106/291 (36%), Gaps = 41/291 (14%)

Query: 6   GGIS----SEREVSLSSGKACASALEDAGF--------------------KVSQIDVDRS 41
           GG+S     E + S   G     AL++AG                     +V  + V   
Sbjct: 105 GGLSIGQAGEFDYS---GSQALKALKEAGVKSVLINPNIATIQTDHKLADEVYYLPVTPE 161

Query: 42  -VGLVLAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRS 96
            V  V+   KPD  F    G    +  VQ     I E   +    + I     S D+   
Sbjct: 162 YVTHVIEKEKPDGIFLSFGGQTALNLGVQMNRMGIFEKYGVKVLGTSIKTLETSEDRDLF 221

Query: 97  KQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154
            + ++   +P+  SI V+     +++   I  P +++       LG       + +    
Sbjct: 222 AKALNEIDIPIAESIAVSTVDEALEAADKIGYPIIVRSAYALGGLGSGFAANAEELK--N 279

Query: 155 LQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTH 213
           L S S     Q+L+E+ + G  E+   V+ DA+ +   I V   + +   L   + +S  
Sbjct: 280 LSSRSLTLAPQILVEKSLKGWKEVEYEVVRDAANN--CITVCNMENFD-PLGIHTGDSIV 336

Query: 214 VLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
           V P++ +  + Y  ++  A    + +G  G     +   P       +E+N
Sbjct: 337 VAPSQTLSDEEYHMLRTAAIKIVRHLGVVGECNVQYALQPDGLDYRVIEVN 387



 Score = 53.6 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 30/204 (14%), Positives = 67/204 (32%), Gaps = 22/204 (10%)

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVI 130
           E        +       + D+ +  Q + S GV       +            +  P ++
Sbjct: 735 ETGGAHVLGTDPKDIDRAEDRHKFSQTLDSIGVDQPAWKELTSVAEAEAFADSVGYPVLV 794

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL----TCGVMGDAS 186
           +P    S   + VI+    +   L+ +S  +    ++I ++++G +          G   
Sbjct: 795 RPSYVLSGAAMSVIRSQDELHDKLVSASDVSPDHPVVITKFIEGAQEIDIDAVASGGKLL 854

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG---- 242
           L      V  +  +S +       +  + P  +   I   V+ +A    +A    G    
Sbjct: 855 LHAVSEHVEAAGVHSGDA------TLVLPPVNLDESIMARVKEIAEKVAKAFSITGPFNM 908

Query: 243 -ISRSDFLFDPLSRKVFW--LEIN 263
            I ++D   +P   +     +E N
Sbjct: 909 QIIKAD---NPDGGEPQLKVIECN 929


>gi|187930920|ref|YP_001890904.1| carbamoyl phosphate synthase large subunit [Francisella tularensis
           subsp. mediasiatica FSC147]
 gi|187711829|gb|ACD30126.1| carbamoyl-phosphate synthase, large subunit [Francisella tularensis
           subsp. mediasiatica FSC147]
          Length = 1094

 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 48/278 (17%), Positives = 100/278 (35%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG      L++ G+ V  +         D               SVG ++A  +PD    
Sbjct: 29  SGTQACKVLKEDGYTVFLVNSNPATIMTDPTTADKIFIEPITVESVGKIIARERPDAILP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      ILE   +    +   +   + ++ R  + ++  G+ V  +++
Sbjct: 89  TVGGQTALNCALALDKAGILEKYNVEMLGAKADSIDKAENRERFNKAMAKIGLEVPRNVV 148

Query: 113 VNRFTMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           V       + L  I  P +I+P       G  +    +     +    S +  +++LI++
Sbjct: 149 VQSMEQAYKALEDIGLPAIIRPSFTLGGSGGGIAYTKEEFEKIVKNGLSLSPTNEVLIDE 208

Query: 171 YVDG-IELTCGVMGDASL-DVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEV 227
            + G  E    V+ D +   +   ++   D           +S  V PA  +    Y+ +
Sbjct: 209 SILGWKEYEMEVIRDKADNSIIVCSIENIDPMGIHT----GDSITVAPALTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P   K+  +E+N 
Sbjct: 265 RDASIAVLREIGVETGGSNVQFAVNPKDGKLVVIEMNP 302



 Score = 60.5 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 34/221 (15%), Positives = 85/221 (38%), Gaps = 13/221 (5%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI--SPPYVIKPL 133
            IP   +      L+ D+ R K+++   G+    + +        + ++    P V++P 
Sbjct: 673 NIPILGTDPDKIDLAEDRERFKELLDKVGLKQPLNTIAYTINELKKKIVNVGYPVVVRPS 732

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEI 192
                  + +I   + +   +  +S       +LI++++ D  EL    + D    V   
Sbjct: 733 NVLGGRAMEIIHSQEELDAYIKTNSKCILEGPILIDKFLEDATELDVDALTDGGERVFVA 792

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
            + +   +  E    S +S   +P + +  +  +EV++      + +   G+    F + 
Sbjct: 793 GIME---HIEEAGIHSGDSACSIPTRSLSNEQIEEVKQATIKLARELNVIGLMNVQFAY- 848

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
             + +++ +E+N +   T     P +A   G S   +   +
Sbjct: 849 -QNGQLYVIEVNPRASRT----VPFVAKATGNSIANIATKL 884


>gi|167618432|ref|ZP_02387063.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia
           thailandensis Bt4]
 gi|172046089|sp|Q2SZW6|PURT_BURTA RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
          Length = 404

 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 49/277 (17%), Positives = 91/277 (32%), Gaps = 38/277 (13%)

Query: 19  GKACASALEDAGFKVSQID----------------VDRSVGLVLAHL----KPDLAFNVL 58
           GK    AL+  G +V  +D                +D +    L  L    +  L    +
Sbjct: 27  GKEVIIALQRLGVEVIAVDRYPNAPGHQVAHRAHVIDMTDPDALRALVDAERAHLVVPEI 86

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKM-RSKQVVSSCGVPVCPSILVNRFT 117
                 D L  A +E   +        A+ L+M++    +      G+P  P      F 
Sbjct: 87  EAI-ATDAL--AEIEAAGVAEVIPTARATQLTMNREGIRRLAAEELGLPTSPYAFAQSFD 143

Query: 118 M--DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH--GDQLLIEQYV- 172
               +   I  P V+KP+   S  G  V++ D  +      + +       ++++E +V 
Sbjct: 144 AFRAAVAQIGFPCVVKPVMSSSGKGQSVVRSDADVEPAWQYAMAGGRVNHGRVIVEGFVQ 203

Query: 173 ---DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
              +  +LT   +  ASL                  Y         P  +     +  + 
Sbjct: 204 FDYEITQLTVRAIDPASLKTRTYFCEPIGHVQVAGDY----VESWQPQPMSAKALERSRD 259

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
           +A     A+G RGI   +         V++ E++ +P
Sbjct: 260 IAHRVTSALGGRGIFGVELFVR--GDDVWFSEVSPRP 294


>gi|119195703|ref|XP_001248455.1| carbamoyl-phosphate synthase, arginine-specific, large chain
           [Coccidioides immitis RS]
          Length = 1174

 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 58/291 (19%), Positives = 106/291 (36%), Gaps = 41/291 (14%)

Query: 6   GGIS----SEREVSLSSGKACASALEDAGF--------------------KVSQIDVDRS 41
           GG+S     E + S   G     AL++AG                     +V  + V   
Sbjct: 105 GGLSIGQAGEFDYS---GSQALKALKEAGVKSVLINPNIATIQTDHKLADEVYYLPVTPE 161

Query: 42  -VGLVLAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRS 96
            V  V+   KPD  F    G    +  VQ     I E   +    + I     S D+   
Sbjct: 162 YVTHVIEKEKPDGIFLSFGGQTALNLGVQMNRLGIFEKYGVKVLGTSIKTLETSEDRDLF 221

Query: 97  KQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154
            + ++   +P+  SI V+     +++   I  P +++       LG       + +    
Sbjct: 222 AKALNEIDIPIAESIAVSTVDEALEAADKIGYPIIVRSAYALGGLGSGFAANAEELK--N 279

Query: 155 LQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTH 213
           L S S     Q+L+E+ + G  E+   V+ DA+ +   I V   + +   L   + +S  
Sbjct: 280 LSSRSLTLAPQILVEKSLKGWKEVEYEVVRDAANN--CITVCNMENFD-PLGIHTGDSIV 336

Query: 214 VLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
           V P++ +  + Y  ++  A    + +G  G     +   P       +E+N
Sbjct: 337 VAPSQTLSDEEYHMLRTAAIKIVRHLGVVGECNVQYALQPDGLDYRVIEVN 387



 Score = 51.7 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/204 (14%), Positives = 67/204 (32%), Gaps = 22/204 (10%)

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVI 130
           E        +       + D+ +  Q + S GV       +            +  P ++
Sbjct: 735 ETGGAHVLGTDPKDIDRAEDRHKFSQTLDSIGVDQPAWKELTSVAEAEAFADSVGYPVLV 794

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL----TCGVMGDAS 186
           +P    S   + VI+    +   L+ +S  +    ++I ++++G +          G   
Sbjct: 795 RPSYVLSGAAMSVIQSQDELHDKLVSASDVSPDHPVVITKFIEGAQEIDIDAVASGGKLL 854

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG---- 242
           L      V  +  +S +       +  + P  +   I   V+ +A    +A    G    
Sbjct: 855 LHAVSEHVEAAGVHSGDA------TLVLPPVNLDESIMARVKEIAAKVAKAFSITGPFNM 908

Query: 243 -ISRSDFLFDPLSRKVFW--LEIN 263
            I ++D   +P   +     +E N
Sbjct: 909 QIIKAD---NPDGGEPQLKVIECN 929


>gi|189499508|ref|YP_001958978.1| Carbamoyl-phosphate synthase L chain ATP-binding [Chlorobium
           phaeobacteroides BS1]
 gi|189494949|gb|ACE03497.1| Carbamoyl-phosphate synthase L chain ATP-binding [Chlorobium
           phaeobacteroides BS1]
          Length = 495

 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 45/278 (16%), Positives = 98/278 (35%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G++V  +         D++              V  ++   KPD    
Sbjct: 29  SGTQACRALKEEGYRVVLVNSNPATIMTDIEFADSTYIEPITPEYVQKIIEKEKPDALLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  V      +LE   +    + + A   + ++      +   G+ +     
Sbjct: 89  TMGGQTALNTAVSLAESGVLERNGVELIGAKLRAIRKAENREFFSDAMKKLGLDMAKGFF 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           V   +   ++   I  P VI+P       G    +        + +  + +   ++L+E+
Sbjct: 149 VRNEKEAKEALEDIGLPIVIRPSFTLGGTGGGFAETKADYYDAVRRGIAESPIGEVLVEE 208

Query: 171 YVDG-IELTCGVMGDASLDV-TEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + +V    ++   D           +S  V PA+ +    Y+ +
Sbjct: 209 CLIGWKEFELEVIRDLADNVIIVCSIENVDPMGVHT----GDSITVAPAQTLSDRQYQLL 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P   ++  +E+N 
Sbjct: 265 RDASIRIIREIGVETGGSNIQFAINPEDGRIVVIEMNP 302


>gi|323478033|gb|ADX83271.1| lysine biosynthesis enzyme LysX [Sulfolobus islandicus HVE10/4]
          Length = 283

 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 53/254 (20%), Positives = 104/254 (40%), Gaps = 33/254 (12%)

Query: 27  EDAGFKVSQIDV-DRSVGLVLAHLKPDL-AF---NVLHGNFGEDGLVQAIL-ELLEIPYT 80
           +  G++V+ I   D  +     +++ D+  F   N+ H       L+ + L E L  P  
Sbjct: 22  KKLGYQVTTIYSKDFVLFSNEFNIENDVNLFIQRNISHNR----ALITSFLVEQLGYPVI 77

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGSS 138
            +  +      +K+ +  +++   +P   + +    T  M+    +  P VIKP++G  S
Sbjct: 78  -NDHMTLIRCENKIFTTYILAKHNIPTPKTFIAFDKTNAMEYSKKLGHPVVIKPVEG--S 134

Query: 139 LGIIVIKKDQSIP----LDLLQSSSWNHGDQLLIEQYV--DGIELTCGVMGDASLDVTEI 192
            G +V K D        L+  + S+  + D   I+++V     ++   V+GD +  V   
Sbjct: 135 WGRMVAKADNLDVLYSYLEYQEFSTQKYKDIYYIQEFVNKPNRDIRIFVIGDET-PVGIY 193

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            V ++         +   +T +     PL I +E++ LA      IG   +   D +F+ 
Sbjct: 194 RVNEN---------NWRTNTALGAKAYPLKIDEELKELALKVKDIIGGFFLG-ID-IFED 242

Query: 253 LSRKVFWLEINVQP 266
             R     E+N  P
Sbjct: 243 KDRGYLVDEVNGVP 256


>gi|227818426|ref|YP_002822397.1| acetyl-CoA carboxylase [Sinorhizobium fredii NGR234]
 gi|227337425|gb|ACP21644.1| putative acetyl-CoA carboxylase, biotin carboxylase protein
           [Sinorhizobium fredii NGR234]
          Length = 461

 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 37/197 (18%), Positives = 72/197 (36%), Gaps = 18/197 (9%)

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTM---DSQHLISPPYVIKPL 133
           +      A     DK+ +K+ +   GVP  P     +             I  P +IK  
Sbjct: 114 FVGPPASAIRTMGDKIAAKRAMIETGVPCVPGPDEALPDDIASITAIADGIGYPVIIKAA 173

Query: 134 KGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLD 188
            GG   G+ V+    ++   +     ++       +L +E+++     +   V+ D   +
Sbjct: 174 GGGGGRGMRVVHDASALKDAVSVTREEARRAFGTPELYMEKFLQHPRHVEIQVLCDDHGN 233

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
              +           ++          PA  IP +I   V +    A Q IG RG+   +
Sbjct: 234 AVWL-----GHRDCSMQRRHQKVVEEAPAPGIPAEIAAAVGKRCADACQQIGYRGVGTFE 288

Query: 248 FLFDPLSRKVFWLEINV 264
           FLF   + + +++E+N 
Sbjct: 289 FLF--ENGEFYFIEMNT 303


>gi|226356015|ref|YP_002785755.1| phosphoribosylamine--glycine ligase [Deinococcus deserti VCD115]
 gi|226318005|gb|ACO46001.1| putative phosphoribosylamine--glycine ligase (Glycinamide
           ribonucleotide synthetase) (phosphoribosylglycinamide
           synthetase) [Deinococcus deserti VCD115]
          Length = 416

 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 31/158 (19%), Positives = 57/158 (36%), Gaps = 4/158 (2%)

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL--ISPPYVIKP 132
           L IP       AS L  DK  SK  ++  G+P    +  +       H+  +  P V+K 
Sbjct: 82  LGIPAFGPTQAASRLEGDKAWSKAFMARHGIPTAQHLTFDNLEDALAHVRGLRTPIVVKD 141

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS-LDVTE 191
               +  G+ +    +     L    S   G + +IE ++ G E+T   + D     +T 
Sbjct: 142 AGLKAGKGVTIAHSHEEAGAALRDIFS-EAGAKAVIEDFMTGQEVTILALTDGVRYALTP 200

Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
            +      Y  +    +     + P  +P D    ++ 
Sbjct: 201 PSQDHKTIYEGDTGPMTGGMGVICPFPVPDDALSLIRE 238


>gi|90580537|ref|ZP_01236342.1| carbamoyl-phosphate synthase large subunit [Vibrio angustum S14]
 gi|90438195|gb|EAS63381.1| carbamoyl-phosphate synthase large subunit [Photobacterium angustum
           S14]
          Length = 1072

 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 47/278 (16%), Positives = 97/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D D              V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPDMADATYIEPIHWEVVRNIIAKERPDAVLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV--PVCPS 110
            + G    +  +      +LE   +    +   A   + D+ R  + + S G+  P   +
Sbjct: 89  TMGGQTALNCALDLERHGVLEEFGVEMIGATADAIDKAEDRSRFDKAMKSIGLECPRADT 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                       ++  P +I+P       G  +    +       +    +  ++LLI++
Sbjct: 149 AKTMEEAYKVLDMVGFPCIIRPSFTMGGTGGGIAYNKEEFEEICSRGLDLSPTNELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + + +   A+   D           +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCAIENFDPMGIHT----GDSITVAPAQTLTDKEYQLM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P   ++  +E+N 
Sbjct: 265 RNASLAVLREIGVETGGSNVQFGINPKDGRMVIIEMNP 302



 Score = 63.6 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 35/196 (17%), Positives = 78/196 (39%), Gaps = 8/196 (4%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQHLISPPYV 129
           LE   +P   +   A   + D+ R +Q V   G+    +  V      ++    I  P V
Sbjct: 653 LEAAGVPIIGTSPDAIDRAEDRERFQQAVDRLGLLQPENATVTTMEQAIEKSRDIGYPLV 712

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           ++P        + ++  +Q +     ++ S ++   +L+++++D       V  DA  D 
Sbjct: 713 VRPSYVLGGRAMEIVYDEQDLRRYFNEAVSVSNESPVLLDRFLD---DAVEVDIDAICDG 769

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
            ++ +     +  +    S +S   LPA  +  +I   ++         +G RG+  + F
Sbjct: 770 EQVVIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMREQVKNLAFELGVRGLMNTQF 829

Query: 249 LFDPLSRKVFWLEINV 264
                  +V+ +E+N 
Sbjct: 830 AV--KDNEVYLIEVNP 843


>gi|331699023|ref|YP_004335262.1| carbamoyl-phosphate synthase L chain ATP-binding protein
           [Pseudonocardia dioxanivorans CB1190]
 gi|326953712|gb|AEA27409.1| Carbamoyl-phosphate synthase L chain ATP-binding protein
           [Pseudonocardia dioxanivorans CB1190]
          Length = 583

 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 74/217 (34%), Gaps = 18/217 (8%)

Query: 59  HGNFGED-GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117
           +G   ED G  Q +++   + +      A     DK+ ++++    G P+ P        
Sbjct: 84  YGFLSEDAGFAQQVVD-AGLVWVGPTPEAMRALGDKVSAREIARRVGAPMAPGTSSPVAG 142

Query: 118 MDSQHLI----SPPYVIKPLKGGSSLGIIVIKKDQ----SIPLDLLQSSSWNHGDQLLIE 169
            D           P  IK   GG   G+ V+ +      +    + ++++     +  +E
Sbjct: 143 ADEVEAFAAEHGFPIAIKAAFGGGGRGLKVVHEAAGIASAFESAVREATAAFGRGECFVE 202

Query: 170 QYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
           +++     +   V+ D     T  AV         ++  +       PA  +P  + + +
Sbjct: 203 RFLPQARHVEVQVLAD-----THGAVAVLGTRDCTVQRRNQKLVEEAPAPFLPDALRETL 257

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              A    +  G       +FL         +LE+N 
Sbjct: 258 HASATAICREAGYTSAGTVEFLV-GADGTTTFLEVNT 293


>gi|293376106|ref|ZP_06622356.1| carbamoyl-phosphate synthase, large subunit [Turicibacter sanguinis
           PC909]
 gi|292645260|gb|EFF63320.1| carbamoyl-phosphate synthase, large subunit [Turicibacter sanguinis
           PC909]
          Length = 1061

 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 50/291 (17%), Positives = 112/291 (38%), Gaps = 43/291 (14%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQID---------------------VDRSVGLV 45
           G ++E + +   G     +L++ G++V  ++                         +  +
Sbjct: 21  GQAAEFDYA---GTQACQSLKEEGYEVILVNSNPATIMTDTEVADKVYMEPLTKEFLSKI 77

Query: 46  LAHLKPDLAFNVLHGNFG--------EDGLVQAILELLEIPYTHSGILASALSMDKMRSK 97
           +   +PD     L G  G        EDG    IL    +    + + A   + D+   +
Sbjct: 78  IRKERPDAVLPSLGGQTGLNLVVELAEDG----ILRECNVEILGTDLSAIKKAEDRDLFR 133

Query: 98  QVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
           +++     P+  S +VN     +   + I  P +++P       G  ++  + ++ + + 
Sbjct: 134 ELMFELKQPIPESEIVNTVEEAVAFANTIGYPIIVRPAFTLGGTGGGIVADEAALRVTVE 193

Query: 156 QSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHV 214
              + +   Q LIE+ + G  E+   VM DA+ +   I V   + +   +   + +S  V
Sbjct: 194 NGLNLSPVTQCLIEKSIAGYKEIEYEVMRDANDNA--IVVCNMENFD-PVGIHTGDSIVV 250

Query: 215 LPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            P++ +    Y  ++ ++    +A+G  G        DP S   + +E+N 
Sbjct: 251 APSQTLADREYHMLREVSLTIIRALGIEGGCNVQLALDPHSFNYYVIEVNP 301



 Score = 66.3 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 29/214 (13%), Positives = 76/214 (35%), Gaps = 13/214 (6%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           L+   I    + +     + D+ + ++++    VP             ++  + I  P +
Sbjct: 646 LQERGIKILGTSLENIDRAEDRDQFEKLLRELEVPQPLGSTCQSVEGALEIANRIGYPVL 705

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           ++P        + +I  D  I   + ++   N  + +LI++Y+ G E+    + D     
Sbjct: 706 LRPSYVLGGRAMEIIDNDAEIERYMKEALKENGENPILIDRYLTGKEVEVDAISDGENVY 765

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               +   +           +S  V P + +   + + +        + +   G+    F
Sbjct: 766 IPGIMEHIERAGVHS----GDSMAVYPPQTLSDKVMELLVDYTTRIARGLKIVGLLNIQF 821

Query: 249 LFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277
           +      +V+ LE+N       P ++ ++  P  
Sbjct: 822 VVTKEE-EVYVLEVNPRSSRTVPFLSKITNVPMA 854


>gi|261208984|ref|ZP_05923389.1| acetyl-CoA carboxylase [Enterococcus faecium TC 6]
 gi|289565204|ref|ZP_06445656.1| acetyl-CoA carboxylase, biotin carboxylase [Enterococcus faecium
           D344SRF]
 gi|293569281|ref|ZP_06680579.1| acetyl-CoA carboxylase, biotin carboxylase [Enterococcus faecium
           E1071]
 gi|294615002|ref|ZP_06694891.1| acetyl-CoA carboxylase, biotin carboxylase [Enterococcus faecium
           E1636]
 gi|294619092|ref|ZP_06698587.1| acetyl-CoA carboxylase, biotin carboxylase [Enterococcus faecium
           E1679]
 gi|260077023|gb|EEW64745.1| acetyl-CoA carboxylase [Enterococcus faecium TC 6]
 gi|289163025|gb|EFD10873.1| acetyl-CoA carboxylase, biotin carboxylase [Enterococcus faecium
           D344SRF]
 gi|291587987|gb|EFF19837.1| acetyl-CoA carboxylase, biotin carboxylase [Enterococcus faecium
           E1071]
 gi|291592133|gb|EFF23753.1| acetyl-CoA carboxylase, biotin carboxylase [Enterococcus faecium
           E1636]
 gi|291594753|gb|EFF26135.1| acetyl-CoA carboxylase, biotin carboxylase [Enterococcus faecium
           E1679]
          Length = 459

 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 75/220 (34%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  FG   E+    ++ E   I +            +K+ ++Q++    VPV P    
Sbjct: 77  AIHPGFGFLSENSRFASMCEECNITFIGPKSATIDAMGNKINARQLMQEANVPVIPGSTG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGD 164
            +      ++    I  P ++K   GG   GI  ++  + +P          ++++ + D
Sbjct: 137 VLSTVEEALEIADRIGYPVMLKAAAGGGGKGIRKVQSKEELPQHFSSAQQEAAAAFGNDD 196

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             L +       +   ++GD   +V  +            K             I     
Sbjct: 197 MYLEKIIYPARHIEVQILGDHFGNVIHLGERDCSLQRNNQKVL----EESPSVVISQTKR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +   A  A +A+        +FL D      +++E+N 
Sbjct: 253 EALGDAAVRAAKAVNYENAGTIEFLMDE-EGDFYFMEMNT 291


>gi|187927224|ref|YP_001897711.1| Carbamoyl-phosphate synthase L chain ATP-binding [Ralstonia
           pickettii 12J]
 gi|309780077|ref|ZP_07674829.1| biotin carboxylase subunit of acetyl-CoA carboxylase [Ralstonia sp.
           5_7_47FAA]
 gi|187724114|gb|ACD25279.1| Carbamoyl-phosphate synthase L chain ATP-binding [Ralstonia
           pickettii 12J]
 gi|308921109|gb|EFP66754.1| biotin carboxylase subunit of acetyl-CoA carboxylase [Ralstonia sp.
           5_7_47FAA]
          Length = 674

 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 80/221 (36%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+           I +      A      K  +K ++ + GVP+ P    
Sbjct: 77  AVHPGYGFLSENEAFAKACADAGIIFVGPPASAIEAMGSKSAAKALMETAGVPLVPGYHG 136

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
           +             I  P +IK   GG   G+ V++   +    L     ++SS    D+
Sbjct: 137 DNQDAAFLRTQADRIGYPVLIKASAGGGGKGMRVVESGDAFEASLASVKREASSSFGDDR 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           +LIE+Y+     +   V  D+  D   +           ++          PA  + LD 
Sbjct: 197 VLIEKYLTRPRHIEIQVFADSFGDAVYL-----FERDCSVQRRHQKVLEEAPAPGMTLDR 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +   A  A +A+G  G    +F+ D      +++E+N 
Sbjct: 252 RRAMGEAAVAAARAVGYVGAGTVEFIVDE-DGTFYFMEMNT 291


>gi|115314001|ref|YP_762724.1| carbamoyl phosphate synthase large subunit [Francisella tularensis
           subsp. holarctica OSU18]
 gi|115128900|gb|ABI82087.1| carbamoyl-phosphate synthase (glutamine-hydrolyzing) [Francisella
           tularensis subsp. holarctica OSU18]
          Length = 1095

 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 48/278 (17%), Positives = 100/278 (35%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG      L++ G+ V  +         D               SVG ++A  +PD    
Sbjct: 29  SGTQACKVLKEDGYTVFLVNSNPATIMTDPTTADKIFIEPITVESVGKIIARERPDAILP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      ILE   +    +   +   + ++ R  + ++  G+ V  +++
Sbjct: 89  TVGGQTALNCALALDKAGILEKYNVEMLGAKADSIDKAENRERFNKAMAKIGLEVPRNVV 148

Query: 113 VNRFTMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           V       + L  I  P +I+P       G  +    +     +    S +  +++LI++
Sbjct: 149 VQSMEQAYKALEDIGLPAIIRPSFTLGGSGGGIAYTKEEFEKIVKNGLSLSPTNEVLIDE 208

Query: 171 YVDG-IELTCGVMGDASL-DVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEV 227
            + G  E    V+ D +   +   ++   D           +S  V PA  +    Y+ +
Sbjct: 209 SILGWKEYEMEVIRDKADNSIIVCSIENIDPMGIHT----GDSITVAPALTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P   K+  +E+N 
Sbjct: 265 RDASIAVLREIGVETGGSNVQFAVNPKDGKLVVIEMNP 302



 Score = 62.1 bits (150), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 31/224 (13%), Positives = 84/224 (37%), Gaps = 19/224 (8%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI--SPPYVIKPL 133
            IP   +      L+ D+ R K+++   G+    + +        + ++    P V++P 
Sbjct: 673 NIPILGTDPDKIDLAEDRERFKELLDKVGLKQPLNTIAYTINELKKKIVNVGYPVVVRPS 732

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDV--- 189
                  + +I   + +   +  +S       +LI++++ D  EL    + D    V   
Sbjct: 733 NVLGGRAMEIIHSQEELDAYIKTNSKCILEGPILIDKFLEDATELDVDALADGGERVFVA 792

Query: 190 -TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                + ++  +S        ++ ++    +  +  +EV++      + +   G+    F
Sbjct: 793 GIMEHIEEAGIHS------GDSACYIPTRSLSNEQIEEVKQATIKLARELNVIGLMNVQF 846

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
            +   + +++ +E+N +   T     P +A   G S   +   +
Sbjct: 847 AY--QNGQLYVIEVNPRASRT----VPFVAKATGNSIANIATKL 884


>gi|6552726|gb|AAF16526.1|AF191301_2 ADP-forming, carbamate-phosphorylating [Medicago sativa]
          Length = 1072

 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 99/278 (35%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +              D         ++V  ++   +PD+   
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPAMADATYIEPIEWQTVAKIIEKERPDVILP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      +LE   +    +   A  ++ D+    Q +   G+    + +
Sbjct: 89  TMGGQTALNCALALAKNGVLEKYNVELIGAKEEAINMAEDRNLFDQAMKRIGLSCARAKI 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           V+      ++      P +I+P       G  +            +    +  ++LLI++
Sbjct: 149 VHTLEEAKEAPKEFGFPCIIRPSFTMGGSGGGIAYNWDEFEEICTRGLDLSPTNELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + + +   ++   D           +S  V PA+ +    Y+ +
Sbjct: 209 SLLGWKEYEMEVVRDKNDNCIIVCSIENFDPMGVHT----GDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P+  ++  +E+N 
Sbjct: 265 RNASIAVLREIGVETGGSNVQFAVNPVDGRMVVIEMNP 302



 Score = 61.7 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/196 (14%), Positives = 78/196 (39%), Gaps = 8/196 (4%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYV 129
           LE   +P   +   A   + D+ R +Q+++  G+   P+ +V        +   +  P V
Sbjct: 653 LEAEGVPIIGTSPDAIDKAEDRERFQQMINKLGLLQPPNAIVRSLEEALLAADKVGYPLV 712

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++ K+  +   +  +   +    +L++ ++ + IE+    + D    
Sbjct: 713 VRPSYVLGGRAMEIVYKEDELRTYMRTAVQVSEDAPVLLDHFLNNAIEVDIDSVSDGKQV 772

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           V    +   +       +S  ++  + P  +P D+  +++ +       +G  G+   + 
Sbjct: 773 VIGGIMQHIEQCGV---HSGDSACSLPPYSLPADVQDDMREIVKKMAIELGVIGL--MNT 827

Query: 249 LFDPLSRKVFWLEINV 264
                  K++ +E+N 
Sbjct: 828 QLAYQDGKIYVIEVNP 843


>gi|332528563|ref|ZP_08404551.1| acetyl-CoA carboxylase, biotin carboxylase [Hylemonella gracilis
           ATCC 19624]
 gi|332042074|gb|EGI78412.1| acetyl-CoA carboxylase, biotin carboxylase [Hylemonella gracilis
           ATCC 19624]
          Length = 682

 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 72/220 (32%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      +E   I +      + A   DK+ SK++     V   P    
Sbjct: 77  AIHPGYGFLSENEDFAKRVEEEGITFIGPKHYSIAAMGDKIASKKLAGEAKVNTIPGHNA 136

Query: 114 NRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
              + D        I  P +IK   GG   G+ V   D+          +        D+
Sbjct: 137 PIESPDEAVKIAQKIGYPVMIKASAGGGGKGLRVAHNDKECFEGFTSCRNEARNSFGDDR 196

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E++V+    +   V+GD   +V  +   +        K             I     
Sbjct: 197 VFMEKFVEEPRHIEIQVLGDGHGNVIYLNERECSIQRRHQK----VIEEAPSPFISDATR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K +   A    +A+  +     +F      +  ++LE+N 
Sbjct: 253 KAMGEQAVALAKAVKYQSAGTVEF-VVGKDQSFYFLEMNT 291


>gi|325845260|ref|ZP_08168564.1| carbamoyl-phosphate synthase, large subunit [Turicibacter sp. HGF1]
 gi|325488701|gb|EGC91106.1| carbamoyl-phosphate synthase, large subunit [Turicibacter sp. HGF1]
          Length = 1061

 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 50/291 (17%), Positives = 112/291 (38%), Gaps = 43/291 (14%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQID---------------------VDRSVGLV 45
           G ++E + +   G     +L++ G++V  ++                         +  +
Sbjct: 21  GQAAEFDYA---GTQACQSLKEEGYEVILVNSNPATIMTDTEVADKVYMEPLTKEFLSKI 77

Query: 46  LAHLKPDLAFNVLHGNFG--------EDGLVQAILELLEIPYTHSGILASALSMDKMRSK 97
           +   +PD     L G  G        EDG    IL    +    + + A   + D+   +
Sbjct: 78  IRKERPDAVLPSLGGQTGLNLVVELAEDG----ILRECNVEILGTDLSAIKKAEDRDLFR 133

Query: 98  QVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
           +++     P+  S +VN     +   + I  P +++P       G  ++  + ++ + + 
Sbjct: 134 ELMFELKQPIPESEIVNTVEEAVAFANTIGYPIIVRPAFTLGGTGGGIVADEAALRVTVE 193

Query: 156 QSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHV 214
              + +   Q LIE+ + G  E+   VM DA+ +   I V   + +   +   + +S  V
Sbjct: 194 NGLNLSPVTQCLIEKSIAGYKEIEYEVMRDANDNA--IVVCNMENFD-PVGIHTGDSIVV 250

Query: 215 LPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            P++ +    Y  ++ ++    +A+G  G        DP S   + +E+N 
Sbjct: 251 APSQTLADREYHMLREVSLTIIRALGIEGGCNVQLALDPHSFNYYVIEVNP 301



 Score = 66.3 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 29/214 (13%), Positives = 76/214 (35%), Gaps = 13/214 (6%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           L+   I    + +     + D+ + ++++    VP             ++  + I  P +
Sbjct: 646 LQERGIKILGTSLENIDRAEDRDQFEKLLRELEVPQPLGSTCQSVEGALEIANRIGYPVL 705

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           ++P        + +I  D  I   + ++   N  + +LI++Y+ G E+    + D     
Sbjct: 706 LRPSYVLGGRAMEIIDNDAEIERYMKEALKENGENPILIDRYLTGKEVEVDAISDGENVY 765

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               +   +           +S  V P + +   + + +        + +   G+    F
Sbjct: 766 IPGIMEHIERAGVHS----GDSMAVYPPQTLSDKVMELLVDYTTRIARGLKIVGLLNIQF 821

Query: 249 LFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277
           +      +V+ LE+N       P ++ ++  P  
Sbjct: 822 VVTKEE-EVYVLEVNPRSSRTVPFLSKITNVPMA 854


>gi|312130410|ref|YP_003997750.1| acetyl-CoA carboxylase, biotin carboxylase [Leadbetterella
           byssophila DSM 17132]
 gi|311906956|gb|ADQ17397.1| acetyl-CoA carboxylase, biotin carboxylase [Leadbetterella
           byssophila DSM 17132]
          Length = 447

 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 80/221 (36%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     I +  +I +  +         DK  +K+ +   GVPV P    
Sbjct: 77  AIHPGYGFLSENAEFSRICDAYKIKFIGASAEQINQMGDKATAKETMKKAGVPVIPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS-----SSWNHGD 164
            +            I  P +IK   GG   G+ +I+           +     +++ +  
Sbjct: 137 LLSSVEEGKALAEEIGYPVIIKATAGGGGRGMRIIRHADEFQKHWEDAKMESGAAFGNDG 196

Query: 165 QLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
             L E++++    +   ++GD   +V+ ++           K             +  ++
Sbjct: 197 LYL-EKFIEEPRHIEIQIVGDQYGNVSHLSERDCSIQRRHQK----LIEETPSPIVSPEL 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +++   A    +AI   G    +FL D    K +++E+N 
Sbjct: 252 REQMGAAAVAGAKAIRYEGAGTIEFLVDKY-GKFYFMEMNT 291


>gi|290889766|ref|ZP_06552854.1| hypothetical protein AWRIB429_0244 [Oenococcus oeni AWRIB429]
 gi|290480590|gb|EFD89226.1| hypothetical protein AWRIB429_0244 [Oenococcus oeni AWRIB429]
          Length = 1064

 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 49/290 (16%), Positives = 106/290 (36%), Gaps = 41/290 (14%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQIDVDRS---------------------VGLV 45
           G ++E + S   G   + +L + G+ V  ++ + +                     +  +
Sbjct: 21  GQAAEFDYS---GTQASLSLREEGYSVVLVNSNPATIMTDTEIADQVYIEPLTLPFIKRI 77

Query: 46  LAHLKPDLAFNVLHGN--------FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSK 97
           L   +PD     + G           EDG    ILE L+I    + + A   + D+ + K
Sbjct: 78  LRKERPDALLATIGGQTALNLAKELAEDG----ILEELKIELLGTKLKAIEAAEDREKFK 133

Query: 98  QVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
           Q++ +   PV  S +       +     I  P +++P       G  +++  + +     
Sbjct: 134 QLMEALKEPVPESRIARTLEQAVHFADQIGYPIIVRPAYTLGGTGGEIVENSEQLTEVAK 193

Query: 156 QSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHV 214
                +   Q+LIE+ + G  E+   VM D + +   + V   + +     ++  +    
Sbjct: 194 NGLELSPVTQVLIEKSIAGYKEIEFEVMRDGNDNA--LIVASMENFDPVGIHTVDSIVVS 251

Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
               +    Y+ ++  A    +A+   G        DP S + + +E+N 
Sbjct: 252 PVQTLSDREYQMLRDAALKIIRALKIEGGVNIQLALDPDSLRYYIIEVNP 301



 Score = 55.1 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 42/265 (15%), Positives = 91/265 (34%), Gaps = 28/265 (10%)

Query: 22  CASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH---------GNFG 63
           C  A++ AG+K   I         D   S  L    L  +   NV+             G
Sbjct: 577 CVKAIQKAGYKAIVINSNPETVSTDFSVSDKLYFEPLTLEDVLNVIDLEKPIGVVVQFGG 636

Query: 64  EDGL-VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDS 120
           +  + +   LE   +    + +     S D+    QV+    +           T  +  
Sbjct: 637 QTAINLAGRLENNGVKLLGTSLKDINRSEDREDFNQVIKKLDLSQPFGKTATTVTQALSV 696

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P +I+P        + ++   Q +   + ++   +    +LI+ Y+   E    
Sbjct: 697 AEEVGYPLLIRPSYVLGGRAMEIVTNRQDLSDYMKRAVKVSLKHPVLIDSYLTVREAEID 756

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIG 239
           ++ D       I VP    +       S +S  V P++ +  ++ +++   AF   + + 
Sbjct: 757 LLSDGQ----TIIVPGIMEHIERAGVHSGDSMSVYPSQYLDQNVQEQMLDAAFKLAKELH 812

Query: 240 CRGISRSDFLFDPLSRKVFWLEINV 264
             G+    F+      + + +E+N 
Sbjct: 813 TIGLMNVQFVIHEQ--QAYVIEVNP 835


>gi|256005655|ref|ZP_05430613.1| cyanophycin synthetase [Clostridium thermocellum DSM 2360]
 gi|255990413|gb|EEU00537.1| cyanophycin synthetase [Clostridium thermocellum DSM 2360]
          Length = 824

 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 50/109 (45%), Gaps = 3/109 (2%)

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           ++ +K  +K++++   +PV        F   +     I  P VIKP+      G+ +  K
Sbjct: 153 MAGNKQLAKRLLAENKIPVPDGDTAYSFEGALQIAREIGFPVVIKPVDSNQGKGVTLNIK 212

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195
           D+   +++  + +  +   +L+E+YV G +    V+GD    V E   P
Sbjct: 213 DEQ-EMEIAYNEARKYSRVVLVEKYVKGKDYRVLVVGDRVAAVAERRPP 260


>gi|284799763|ref|ZP_06390325.1| phosphoribosylaminoimidazole carboxylase, ATPase subunit [Neisseria
           subflava NJ9703]
 gi|284797069|gb|EFC52416.1| phosphoribosylaminoimidazole carboxylase, ATPase subunit [Neisseria
           subflava NJ9703]
          Length = 368

 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 27/193 (13%), Positives = 69/193 (35%), Gaps = 19/193 (9%)

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP-PYVIKPLKGG-S 137
                   A++ ++++ K  +   G+   P   V +    ++  I   P ++K    G  
Sbjct: 84  VSPSGDCVAIAQNRIQEKAWIRKAGLQTAPYQAVCKTEDITEESIQFLPGILKTATLGYD 143

Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKS 197
             G I +K    +     +    + G   ++E+ VD             + V    +   
Sbjct: 144 GKGQIRVKTLDELKAAFAE----HGGVDCVLEKMVDLR---------GEISVIVCRLNND 190

Query: 198 DFYSYE-LKYSSLNSTH---VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
           +  +++  +    N      ++PA++  DI  + +++A      +   G+   +      
Sbjct: 191 NVQTFDPAENIHENGILAYSIVPARLSADIQLQARQMAQRLADGLNYVGVLAVEMFVVGD 250

Query: 254 SRKVFWLEINVQP 266
           + ++   EI  +P
Sbjct: 251 THELVVNEIAPRP 263


>gi|225849280|ref|YP_002729444.1| phosphoribosylglycinamide formyltransferase 2 [Sulfurihydrogenibium
           azorense Az-Fu1]
 gi|225643250|gb|ACN98300.1| phosphoribosylglycinamide formyltransferase 2 [Sulfurihydrogenibium
           azorense Az-Fu1]
          Length = 393

 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 39/259 (15%), Positives = 90/259 (34%), Gaps = 43/259 (16%)

Query: 30  GFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
            + V  +   + +  ++   KPD     +     +D        L+++      ++  A 
Sbjct: 54  RYYVIDMKNGKQIKDIVYREKPDFIVPEIEAIDTDD--------LIDLEKEGFTVVPCAQ 105

Query: 90  SMDKMRSKQV------VSSCGVPVCPSILVNRFTMDSQHL--ISPPYVIKPLKGGSSLGI 141
           ++ K    ++          G+        +      + +  I  P V+KP+   S  G 
Sbjct: 106 AV-KYTMNRIGIRRLAAEKVGLKTSKYAFASDIETYRKKVMEIGLPCVVKPVMSSSGKGQ 164

Query: 142 IVIKKDQSIPLD--LLQSSSWNHGDQLLIEQYV----DGIELTCGVMGDASL---DVTEI 192
            V++  + I       Q ++   G +++IE+++    +   LT       +L    +  I
Sbjct: 165 SVVRSLEDIDRAWYYAQENARGKGSEVIIEEFINFDYEITLLTVRTKNQGTLFCEPIGHI 224

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            V + D++               P  +      + + +A      +G  GI   +     
Sbjct: 225 QV-EGDYW-----------ESWQPHIMSETALNKAKEIAKKITDELGGYGIFGCEMFV-- 270

Query: 253 LSRKVFWLEINVQP---GM 268
              +V++ EI+ +P   GM
Sbjct: 271 KGDEVWFNEISPRPHDTGM 289


>gi|241661745|ref|YP_002980105.1| carbamoyl-phosphate synthase L chain ATP-binding [Ralstonia
           pickettii 12D]
 gi|240863772|gb|ACS61433.1| Carbamoyl-phosphate synthase L chain ATP-binding [Ralstonia
           pickettii 12D]
          Length = 674

 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 79/221 (35%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+           I +      A      K  +K ++   GVP+ P    
Sbjct: 77  AIHPGYGFLSENEAFAKACADAGIVFVGPPASAIEAMGSKSAAKALMEKAGVPLVPGYHG 136

Query: 114 NRFTM----DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
           +             I  P +IK   GG   G+ V++   +    L     ++SS    D+
Sbjct: 137 DNQDAGFLRTQADRIGYPVLIKASAGGGGKGMRVVESGDAFEASLASVKREASSSFGDDR 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           +LIE+Y+     +   V  D+  D   +           ++          PA  + LD 
Sbjct: 197 VLIEKYLTRPRHIEIQVFADSFGDAVYL-----FERDCSVQRRHQKVLEEAPAPGMTLDR 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +   A  A +A+G  G    +F+ D      +++E+N 
Sbjct: 252 RRAMGEAAVAAARAVGYVGAGTVEFIVDE-DGTFYFMEMNT 291


>gi|89255476|ref|YP_512837.1| carbamoyl phosphate synthase large subunit [Francisella tularensis
           subsp. holarctica LVS]
 gi|156501405|ref|YP_001427470.1| carbamoyl phosphate synthase large subunit [Francisella tularensis
           subsp. holarctica FTNF002-00]
 gi|167009320|ref|ZP_02274251.1| carbamoyl-phosphate synthase, large subunit [Francisella tularensis
           subsp. holarctica FSC200]
 gi|254368455|ref|ZP_04984472.1| carbamoyl-phosphate synthase large chain [Francisella tularensis
           subsp. holarctica FSC022]
 gi|290954319|ref|ZP_06558940.1| carbamoyl phosphate synthase large subunit [Francisella tularensis
           subsp. holarctica URFT1]
 gi|295312265|ref|ZP_06803060.1| carbamoyl phosphate synthase large subunit [Francisella tularensis
           subsp. holarctica URFT1]
 gi|89143307|emb|CAJ78470.1| Carbamoyl-phosphate synthase large chain [Francisella tularensis
           subsp. holarctica LVS]
 gi|156252008|gb|ABU60514.1| carbamoyl-phosphate synthase, large subunit [Francisella tularensis
           subsp. holarctica FTNF002-00]
 gi|157121349|gb|EDO65550.1| carbamoyl-phosphate synthase large chain [Francisella tularensis
           subsp. holarctica FSC022]
          Length = 1094

 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 48/278 (17%), Positives = 100/278 (35%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG      L++ G+ V  +         D               SVG ++A  +PD    
Sbjct: 29  SGTQACKVLKEDGYTVFLVNSNPATIMTDPTTADKIFIEPITVESVGKIIARERPDAILP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      ILE   +    +   +   + ++ R  + ++  G+ V  +++
Sbjct: 89  TVGGQTALNCALALDKAGILEKYNVEMLGAKADSIDKAENRERFNKAMAKIGLEVPRNVV 148

Query: 113 VNRFTMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           V       + L  I  P +I+P       G  +    +     +    S +  +++LI++
Sbjct: 149 VQSMEQAYKALEDIGLPAIIRPSFTLGGSGGGIAYTKEEFEKIVKNGLSLSPTNEVLIDE 208

Query: 171 YVDG-IELTCGVMGDASL-DVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEV 227
            + G  E    V+ D +   +   ++   D           +S  V PA  +    Y+ +
Sbjct: 209 SILGWKEYEMEVIRDKADNSIIVCSIENIDPMGIHT----GDSITVAPALTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P   K+  +E+N 
Sbjct: 265 RDASIAVLREIGVETGGSNVQFAVNPKDGKLVVIEMNP 302



 Score = 62.1 bits (150), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 31/224 (13%), Positives = 84/224 (37%), Gaps = 19/224 (8%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI--SPPYVIKPL 133
            IP   +      L+ D+ R K+++   G+    + +        + ++    P V++P 
Sbjct: 673 NIPILGTDPDKIDLAEDRERFKELLDKVGLKQPLNTIAYTINELKKKIVNVGYPVVVRPS 732

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDV--- 189
                  + +I   + +   +  +S       +LI++++ D  EL    + D    V   
Sbjct: 733 NVLGGRAMEIIHSQEELDAYIKTNSKCILEGPILIDKFLEDATELDVDALADGGERVFVA 792

Query: 190 -TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                + ++  +S        ++ ++    +  +  +EV++      + +   G+    F
Sbjct: 793 GIMEHIEEAGIHS------GDSACYIPTRSLSNEQIEEVKQATIKLARELNVIGLMNVQF 846

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
            +   + +++ +E+N +   T     P +A   G S   +   +
Sbjct: 847 AY--QNGQLYVIEVNPRASRT----VPFVAKATGNSIANIATKL 884


>gi|258543573|ref|YP_003189006.1| acetyl-CoA carboxylase biotin carboxylase subunit [Acetobacter
           pasteurianus IFO 3283-01]
 gi|256634651|dbj|BAI00627.1| acetyl-CoA carboxylase [Acetobacter pasteurianus IFO 3283-01]
 gi|256637707|dbj|BAI03676.1| acetyl-CoA carboxylase [Acetobacter pasteurianus IFO 3283-03]
 gi|256640761|dbj|BAI06723.1| acetyl-CoA carboxylase [Acetobacter pasteurianus IFO 3283-07]
 gi|256643816|dbj|BAI09771.1| acetyl-CoA carboxylase [Acetobacter pasteurianus IFO 3283-22]
 gi|256646871|dbj|BAI12819.1| acetyl-CoA carboxylase [Acetobacter pasteurianus IFO 3283-26]
 gi|256649924|dbj|BAI15865.1| acetyl-CoA carboxylase [Acetobacter pasteurianus IFO 3283-32]
 gi|256652914|dbj|BAI18848.1| acetyl-CoA carboxylase [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256655968|dbj|BAI21895.1| acetyl-CoA carboxylase [Acetobacter pasteurianus IFO 3283-12]
          Length = 447

 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 77/220 (35%), Gaps = 18/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+      +E   + +         +  DK+ +K  +   GVP+ P    
Sbjct: 77  AIHPGYGFLSENADFAETVEAHGLTFIGPTAEHIRMMGDKITAKTTMQMLGVPLVPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSWNHGDQ 165
            +       +    +  P +IK   GG   G+ V +    +     +   ++ +    D 
Sbjct: 137 ELTSLEEAREVADKVGYPVLIKAAAGGGGRGMKVAQTAGDLEDAWKMARAEARAAFGNDA 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+Y+D    +   ++GD   +V               K          PA +  +  
Sbjct: 197 VYLEKYMDRPRHIELQILGDNYGNVVHFGERDCSLQRRHQKLLEEAG---SPA-LTAEQR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             + + A  A   +G R     +FL+     +  ++E+N 
Sbjct: 253 DAIGQTATQALSKMGYRNAGTLEFLY--QDGQFCFIEMNT 290


>gi|251788195|ref|YP_003002916.1| carbamoyl phosphate synthase large subunit [Dickeya zeae Ech1591]
 gi|247536816|gb|ACT05437.1| carbamoyl-phosphate synthase, large subunit [Dickeya zeae Ech1591]
          Length = 1074

 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 50/319 (15%), Positives = 107/319 (33%), Gaps = 52/319 (16%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D +              V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVVLVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +    Q +L    +    +   A   + D+ R    +   G+    S +
Sbjct: 89  TMGGQTALNCALELERQGVLAEFGVTMIGATADAIDKAEDRRRFDIAMKKIGLETARSGI 148

Query: 113 VNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     +     +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHNMDEALAVAADVGYPCIIRPSFTMGGTGGGIAYNREEFEEICTRGLDLSPTKELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + + +   ++   D           +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENLDAMGIHT----GDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV-----------QPGMTPVSIFP 275
           +  +    + IG   G S   F  +P + ++  +E+N              G        
Sbjct: 265 RNASMAVLREIGVETGGSNVQFAVNPKTGRLIVIEMNPRVSRSSALASKATGF----PIA 320

Query: 276 EMAA--YAGYSFRELLLWM 292
           ++AA    GY+  EL+  +
Sbjct: 321 KIAAKLAVGYTLDELMNDI 339



 Score = 63.2 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 33/197 (16%), Positives = 78/197 (39%), Gaps = 10/197 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL--ISPPYV 129
           LE   +P   +   A   + D+ R +Q V+  G+    +  V+      +    I  P V
Sbjct: 654 LEAAGVPVIGTSPDAIDRAEDRERFQQAVNRLGLKQPANATVSTIDQAVEKAVGIGYPLV 713

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  +  +      + S ++   +L+++++ D +E+    + D    
Sbjct: 714 VRPSYVLGGRAMEIVYDEVDLRRYFQTAVSVSNDAPVLLDRFLDDAVEVDVDAICDGERV 773

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           +    +   +    +    S +S   LPA  +  +I  E++R        +  RG+    
Sbjct: 774 LIGGIMEHIE----QAGVHSGDSACSLPAYTLSKEIQDEMRRQVEKLAFELSVRGLMNVQ 829

Query: 248 FLFDPLSRKVFWLEINV 264
           F     + +V+ +E+N 
Sbjct: 830 FAV--KNNEVYLIEVNP 844


>gi|315497808|ref|YP_004086612.1| alpha-l-glutamate ligase, rimk family [Asticcacaulis excentricus CB
           48]
 gi|315415820|gb|ADU12461.1| alpha-L-glutamate ligase, RimK family [Asticcacaulis excentricus CB
           48]
          Length = 470

 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 89/223 (39%), Gaps = 26/223 (11%)

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFTMDSQHLISPPYVIKPLKG 135
           Y  +   A + S DK+ + QV++  G+P+  +             Q +   P VIK  KG
Sbjct: 249 YCLNRSSAISASRDKLHALQVLARKGIPMPVTAFAKSPKDTDFVVQLVGGAPLVIKLTKG 308

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV---DGIELTCGVMGDASLDVTEI 192
               G+++ +    +    + S+  +   +LL ++++   DG +L C V+G   +   + 
Sbjct: 309 AQGRGVVLAETH--LAAASVISAFRDLDAELLTQEFIREADGEDLRCLVIGSKVVAAMKR 366

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
                DF +   +     S  + P +           +A  + +A+G +     D L   
Sbjct: 367 KAKIGDFRANLHQGGKALSVEISPEEAD---------IAVKSARALGLQVAG-VDILRSN 416

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
              KV  LE+N  PG+  +         +G    +L++  VE 
Sbjct: 417 SGPKV--LEVNSSPGLQGI------EKASGVDVADLIIRHVES 451


>gi|238751409|ref|ZP_04612902.1| Biotin carboxylase [Yersinia rohdei ATCC 43380]
 gi|238710467|gb|EEQ02692.1| Biotin carboxylase [Yersinia rohdei ATCC 43380]
          Length = 449

 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 39/222 (17%), Positives = 81/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         L  DK+ +   +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAEQVERSGFIFIGPRAETIRLMGDKVSAISAMKKAGVPCVPGSDG 136

Query: 112 LVNRFT---MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
            ++  T         I  P +IK   GG   G+ V++ D+ +   +     ++ +  + D
Sbjct: 137 PLSDDTTKNKAFAKRIGYPVIIKASGGGGGRGMRVVRHDKDLEQSINMTRAEAKAAFNND 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+Y++    +   ++ D   +   +A           K          PA  I  +
Sbjct: 197 MVYMEKYLENPRHIEIQILADGQGNAIYLAERDCSMQRRHQK-----VVEEAPAPGITSE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             + +      A   IG RG    +FL+   + + +++E+N 
Sbjct: 252 TRRYIGERCAKACVEIGYRGAGTFEFLY--ENGEFYFIEMNT 291


>gi|227509995|ref|ZP_03940044.1| acetyl-CoA carboxylase [Lactobacillus brevis subsp. gravesensis
           ATCC 27305]
 gi|227190601|gb|EEI70668.1| acetyl-CoA carboxylase [Lactobacillus brevis subsp. gravesensis
           ATCC 27305]
          Length = 470

 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 77/221 (34%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     + E   I +        +L  DK  +++ + S GVPV P    
Sbjct: 88  AIHPGYGFLSENAEFAELCESCHIKFIGPSHQLISLMGDKANAREAMKSAGVPVIPGSEG 147

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGDQ 165
            +            I  P ++K   GG   GI  + +   +         ++ +  + D 
Sbjct: 148 DVTSIDQAEKIAEKIGFPVLLKSAAGGGGKGIREVDRPDQLRDAFEQAQREAKASFNDDS 207

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDI 223
           + +E+ +     +   V+ D   +V  +           L+ +        P  +     
Sbjct: 208 MYVEKLIRNAKHVEMQVIADDFGNVVYLPE-----RDCSLQRNHQKVIEESPCVLISPAE 262

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            KE+  +   A   +G       +FL D  +   +++E+N 
Sbjct: 263 RKELGEIVAHATLKLGYTNTGTYEFLMDE-THHFYFMEMNT 302


>gi|242279639|ref|YP_002991768.1| carbamoyl-phosphate synthase, large subunit [Desulfovibrio
           salexigens DSM 2638]
 gi|242122533|gb|ACS80229.1| carbamoyl-phosphate synthase, large subunit [Desulfovibrio
           salexigens DSM 2638]
          Length = 1077

 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 46/278 (16%), Positives = 101/278 (36%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQID------------VDR---------SVGLVLAHLKPDLAFN 56
           SG     AL++ G++V  ++             DR         ++  ++   +PD    
Sbjct: 29  SGTQALKALKEEGYEVILVNSNPATIMTDPVLADRTYIEPIEPGTIAKIIEKERPDALLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G    +  +      +L+   +    + +     +  +   +  +   G+ V  S +
Sbjct: 89  TLGGQTALNTALAVAEMGVLDKFGVELIGASVDVIEKAESRELFRAAMEKIGLKVPTSRI 148

Query: 113 VNRFTMDSQH--LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                   +    IS P +I+P       G  V    + +    +Q  S +  +++++E+
Sbjct: 149 ARNIDDVRRCGKEISFPIIIRPAFTLGGTGGGVAYNMEDLEDIAMQGISASLQNEVMLEE 208

Query: 171 YVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            + G  E    VM D   + V   ++   D           +S  V PA+ +    Y+ +
Sbjct: 209 SILGWKEYELEVMRDRKDNCVIICSIENIDPMGVHT----GDSITVAPAQTLTDVEYQML 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RDASLAIMREIGVETGGSNVQFAINPENGELAIIEMNP 302



 Score = 55.9 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 30/218 (13%), Positives = 78/218 (35%), Gaps = 14/218 (6%)

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKP 132
             +    +   A   + D+ R + ++    +   P+               +  P V++P
Sbjct: 661 AGVNILGTSPDAIDRAEDRERFQALLKKLDLKQPPNGTAMSLEDAKAIAERLDYPLVLRP 720

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTE 191
                  G+ ++  D+       +++  +    +LI+++++  +E+    + D       
Sbjct: 721 SYVLGGRGMDIVYSDEEFDSYFREAAVVSPEHPILIDKFLENAVEVDVDALADGEQTYVA 780

Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
             +   +    E    S +S  VLP   +  +I KE++R      + +   G+    F  
Sbjct: 781 GVMEHIE----EAGIHSGDSACVLPPHTLSDEIVKEIERQTVALAEELEVVGLMNIQFAV 836

Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
                 ++ +E+N +   T     P ++   G    ++
Sbjct: 837 --KDGDIYIIEVNPRASRT----VPFVSKATGIQLAKM 868


>gi|212638066|ref|YP_002314586.1| putative carboxylase (ATP-grasp family) [Anoxybacillus flavithermus
           WK1]
 gi|212559546|gb|ACJ32601.1| Predicted carboxylase (ATP-grasp family) [Anoxybacillus
           flavithermus WK1]
          Length = 359

 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 32/171 (18%), Positives = 62/171 (36%), Gaps = 15/171 (8%)

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGG 136
           +      +  ++ +K  S+  +    VP     +V  F   + +   I  P V+KP    
Sbjct: 47  FLSPSPKSVQIARNKDLSRICLLEKSVPSAKFHIVKSFEEALKAAKDIGYPCVVKPTAET 106

Query: 137 SSLGIIVIKKDQSIPLD-------LLQSSSWNHGDQLLIEQYVDGIELTCGVM-GDASLD 188
           SS G+  +  D+ +          ++         ++LIE+Y+ G E++   +  +    
Sbjct: 107 SSYGVECVFNDEQLLKAFNFANSIIINERGQRREGKVLIEEYMVGEEVSVETISINGDCH 166

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
           V  I       +      + +      P KIP +    V  +   A  AIG
Sbjct: 167 VLGITSKGLTGWP-----NFVECEFSFPYKIPENTRNSVIDVVKSALNAIG 212


>gi|66047418|ref|YP_237259.1| carbamoyl phosphate synthase large subunit [Pseudomonas syringae
           pv. syringae B728a]
 gi|289676013|ref|ZP_06496903.1| carbamoyl phosphate synthase large subunit [Pseudomonas syringae
           pv. syringae FF5]
 gi|63258125|gb|AAY39221.1| Carbamoyl-phosphate synthase, large subunit, glutamine-dependent
           [Pseudomonas syringae pv. syringae B728a]
 gi|330937935|gb|EGH41722.1| carbamoyl phosphate synthase large subunit [Pseudomonas syringae
           pv. pisi str. 1704B]
 gi|330969640|gb|EGH69706.1| carbamoyl phosphate synthase large subunit [Pseudomonas syringae
           pv. aceris str. M302273PT]
          Length = 1073

 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 28/196 (14%), Positives = 74/196 (37%), Gaps = 8/196 (4%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYV 129
           LE   +P   +   A   + D+ R + +V    +   P+  V        +   I  P V
Sbjct: 653 LEAAGVPIIGTSPDAIDRAEDRERFQHMVERLNLRQPPNATVRSEDEAIRAAAKIGYPLV 712

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLD 188
           ++P        + ++ ++  +   L ++   ++   +L++ +++  IE+    + D +  
Sbjct: 713 VRPSYVLGGRAMEIVYQEDELKRYLREAVQVSNDSPVLLDHFLNCAIEMDVDAVCDGTDV 772

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           V    +   +       +S  ++  + P  +P  I  E++         +G  G+   + 
Sbjct: 773 VIGAIMQHIEQAGV---HSGDSACSLPPYSLPAHIQDEMREQVKKMALELGVVGL--MNV 827

Query: 249 LFDPLSRKVFWLEINV 264
                   ++ +E+N 
Sbjct: 828 QLALQGEDIYVIEVNP 843



 Score = 62.8 bits (152), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 96/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +              D         ++V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPAMADATYIEPIKWQTVAKIIEKERPDALLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +    + +LE   +    +       + D+ R  + + S G+    S +
Sbjct: 89  TMGGQTALNCALDLEREGVLEKFGVEMIGANADTIDKAEDRSRFDKAMKSIGLACPRSGI 148

Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     +     +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHSMEEANAVLEKLGFPCIIRPSFTMGGTGGGIAYNREEFEEICARGLDLSPTKELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D   + +   ++   D           +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKKDNCIIVCSIENFDPMGVHT----GDSITVAPAQTLTDKEYQIL 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F   P + ++  +E+N 
Sbjct: 265 RNASLAVLREIGVETGGSNVQFGICPNTGRMVVIEMNP 302


>gi|16126418|ref|NP_420982.1| propionyl-CoA carboxylase subunit alpha [Caulobacter crescentus
           CB15]
 gi|221235198|ref|YP_002517634.1| propionyl-CoA carboxylase biotin-containing subunit [Caulobacter
           crescentus NA1000]
 gi|13423678|gb|AAK24150.1| propionyl-CoA carboxylase, alpha subunit [Caulobacter crescentus
           CB15]
 gi|220964370|gb|ACL95726.1| propionyl-CoA carboxylase biotin-containing subunit [Caulobacter
           crescentus NA1000]
          Length = 669

 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 72/220 (32%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  FG   E+           I +      A +   DK+ SK+   + GV   P    
Sbjct: 77  AVHPGFGFLSENAGFAQRCADEGIVFIGPNPGAISAMGDKIESKKFAQAAGVSCVPGHIG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI----KKDQSIPLDLLQSSSWNHGDQ 165
            I      +     I  P +IK   GG   GI V       ++  P    ++ +    D+
Sbjct: 137 EIADTAEAVKISEEIGYPVMIKASAGGGGKGIRVAWTRKDVEEGFPAVRAEAKASFGDDR 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE++++    +   V+GD   +V  +   +        K             +     
Sbjct: 197 IFIEKFIESPRHIEIQVLGDKHGNVVHLFERECSIQRRNQK----VIEEAPSPLLDEATR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +   A    +A+        +F      +  F+LE+N 
Sbjct: 253 NAMGAQAVALAKAVNYDSAGTVEF-VAGQDKSFFFLEMNT 291


>gi|120555040|ref|YP_959391.1| carbamoyl-phosphate synthase L chain, ATP-binding [Marinobacter
           aquaeolei VT8]
 gi|120324889|gb|ABM19204.1| 3-methylcrotonoyl-CoA carboxylase, alpha subunit [Marinobacter
           aquaeolei VT8]
          Length = 662

 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 48/242 (19%), Positives = 82/242 (33%), Gaps = 26/242 (10%)

Query: 34  SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDK 93
           + ID+ R  G    H  P   F   +  F E        E   I +      A A    K
Sbjct: 65  TIIDIARQSGAQAIH--PGYGFLSENTGFAE------ACEANGIVFIGPPSSAIAAMGSK 116

Query: 94  MRSKQVVSSCGVPVCPSILVNRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKK--- 146
             +K ++   GVP+ P       + +           P ++K + GG   G+ V++    
Sbjct: 117 SAAKAIMEKAGVPLVPGYHGKDQSPELLRAEAEKCGFPLLLKAVAGGGGKGMRVVETMAD 176

Query: 147 --DQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYE 203
             D          +++     +LIE+Y+     +   V  D       +A          
Sbjct: 177 FDDALAAAQREARNAFG-NPDMLIERYLTQPRHVEIQVFCDHQGSGIYLAE-----RDCS 230

Query: 204 LKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
           ++          PA  +     K +   A  A QAI   G    +FL+D +    F++E+
Sbjct: 231 VQRRHQKVLEEAPAPGLSEATRKAMGEAAVKAAQAINYVGAGTVEFLYD-VDGSFFFMEM 289

Query: 263 NV 264
           N 
Sbjct: 290 NT 291


>gi|116490364|ref|YP_809908.1| carbamoyl-phosphate synthase large subunit [Oenococcus oeni PSU-1]
 gi|122277447|sp|Q04H29|CARB_OENOB RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|116091089|gb|ABJ56243.1| carbamoyl-phosphate synthase large subunit [Oenococcus oeni PSU-1]
          Length = 1064

 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 49/290 (16%), Positives = 106/290 (36%), Gaps = 41/290 (14%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQIDVDRS---------------------VGLV 45
           G ++E + S   G   + +L + G+ V  ++ + +                     +  +
Sbjct: 21  GQAAEFDYS---GTQASLSLREEGYSVVLVNSNPATIMTDTEIADQVYIEPLTLPFIKRI 77

Query: 46  LAHLKPDLAFNVLHGN--------FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSK 97
           L   +PD     + G           EDG    ILE L+I    + + A   + D+ + K
Sbjct: 78  LRKERPDALLATIGGQTALNLAKELAEDG----ILEELKIELLGTKLKAIEAAEDREKFK 133

Query: 98  QVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
           Q++ +   PV  S +       +     I  P +++P       G  +++  + +     
Sbjct: 134 QLMEALKEPVPESRIARTLEQAVHFADQIGYPIIVRPAYTLGGTGGEIVENSEQLTEVAK 193

Query: 156 QSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHV 214
                +   Q+LIE+ + G  E+   VM D + +   + V   + +     ++  +    
Sbjct: 194 NGLELSPVTQVLIEKSIAGYKEIEFEVMRDGNDNA--LIVASMENFDPVGIHTVDSIVVS 251

Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
               +    Y+ ++  A    +A+   G        DP S + + +E+N 
Sbjct: 252 PVQTLSDREYQMLRDAALKIIRALKIEGGVNIQLALDPDSLRYYIIEVNP 301



 Score = 59.0 bits (142), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 43/265 (16%), Positives = 92/265 (34%), Gaps = 28/265 (10%)

Query: 22  CASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH---------GNFG 63
           C  A++ AG+K   I         D   S  L    L  +   NV+             G
Sbjct: 577 CVKAIQKAGYKAIVINSNPETVSTDFSVSDKLYFEPLTLEDVLNVIDLEKPIGVVVQFGG 636

Query: 64  EDGL-VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDS 120
           +  + +   LE   +    + +     S D+    QV+    +           T  +  
Sbjct: 637 QTAINLAGRLENNGVKLLGTSLKDINRSEDREDFNQVIKKLDLSQPFGKTATTVTQALSV 696

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P +I+P        + ++   Q +   + ++   +    +LI+ Y+ G E    
Sbjct: 697 AEEVGYPLLIRPSYVLGGRAMEIVTNRQDLSDYMKRAVKVSLKHPVLIDSYLTGREAEID 756

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIG 239
           ++ D       I VP    +       S +S  V P++ +  ++ +++   AF   + + 
Sbjct: 757 LLSDGQ----TIIVPGIMEHIERAGVHSGDSMSVYPSQYLDQNVQEQMLDAAFKLAKELH 812

Query: 240 CRGISRSDFLFDPLSRKVFWLEINV 264
             G+    F+      + + +E+N 
Sbjct: 813 TIGLMNVQFVIHEQ--QAYVIEVNP 835


>gi|326335386|ref|ZP_08201574.1| acetyl-CoA carboxylase, biotin carboxylase [Capnocytophaga sp. oral
           taxon 338 str. F0234]
 gi|325692451|gb|EGD34402.1| acetyl-CoA carboxylase, biotin carboxylase [Capnocytophaga sp. oral
           taxon 338 str. F0234]
          Length = 453

 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 84/221 (38%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-SIL 112
            +H  +G   E+     I     I +  +         DK  +K  + + GVP  P S  
Sbjct: 77  AIHPGYGFLSENAKFSKICAENGIKFIGASAEMIDKMGDKATAKATMKAAGVPTIPGSDG 136

Query: 113 VNRFTMDSQHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGD 164
           + R   +++ +   +  P ++K   GG   G+  + K++ +           ++++ +  
Sbjct: 137 LLRNIAEAKKIAKKMGYPVMLKATAGGGGKGMRAVWKEEDLEKAFESATQEAAAAFGNDG 196

Query: 165 QLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
             + E+ ++    +   ++GD       ++           K     +       +  ++
Sbjct: 197 MYM-EKLIEEPRHIEIQIVGDQFGKACHLSERDCSIQRRHQK----LTEETPSPFMTEEL 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            K++   A  A ++I   G+   +FL D   R  +++E+N 
Sbjct: 252 RKKMGDAAVKAAESIKYEGVGTVEFLVDKH-RNFYFMEMNT 291


>gi|319777964|ref|YP_004134394.1| acetyl-CoA carboxylase, biotin carboxylase [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
 gi|317171683|gb|ADV15220.1| acetyl-CoA carboxylase, biotin carboxylase [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
          Length = 457

 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 35/222 (15%), Positives = 79/222 (35%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E   + +      A     DK+ +K+ + + GVP       
Sbjct: 77  AIHPGYGFLSENAAFAEAVENAGLIFVGPSATAIRTMGDKVSAKRTMIAAGVPCVAGSEG 136

Query: 112 LVNRFTMDS---QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL----DLLQSSSWNHGD 164
            + +   +       I  P ++K   GG   G+ +++ +Q++       + ++       
Sbjct: 137 ALPQDEQEVRAIAEAIGYPVIVKAAGGGGGRGMRIVRDEQALMEAVSMAVKEADRAFGNP 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
           Q+ +E++++    +   ++ D       +            K          PA  I  +
Sbjct: 197 QVYLEKFLEQPRHIEIQILADKHGRAVWLGERDCSMQRRHQK-----IIEEAPAPGIARE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              E+  L   A   IG  G    +FL+     +  ++E+N 
Sbjct: 252 AIGEIGDLCARACLTIGYTGAGTFEFLY--EDGRFSFIEMNT 291


>gi|298674229|ref|YP_003725979.1| hypothetical protein Metev_0255 [Methanohalobium evestigatum
           Z-7303]
 gi|298287217|gb|ADI73183.1| protein of unknown function DUF201 [Methanohalobium evestigatum
           Z-7303]
          Length = 305

 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 34/199 (17%), Positives = 75/199 (37%), Gaps = 38/199 (19%)

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLG 140
                A    +DK++  + +S   +P+  +    +            +VIKP  G +S  
Sbjct: 100 GCPPEAVDKCVDKIKCSEFLSKSNIPIPKTTREIKNGW---------WVIKPRYGSASEN 150

Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM-GDASLDVTE----IAVP 195
             V                +   +  +  +Y+DG  ++  ++ GD  L +T     I +P
Sbjct: 151 TFVTS-----------IKGYKPENNYIATEYIDGEHVSVSLISGDNQLPLTVNKQLIDIP 199

Query: 196 KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255
                  E+KY+   + +           +++  +A  A + + CRG    DF+ +  + 
Sbjct: 200 --QINDSEIKYNGNLTPY------STSKKQKLYNIAVSASRLLDCRGYVGIDFILN--ND 249

Query: 256 KVFWLEINVQPGMTPVSIF 274
             + +++N +P     S+ 
Sbjct: 250 TPYIVDVNPRP---TTSLV 265


>gi|289423681|ref|ZP_06425480.1| carbamoyl-phosphate synthase, large subunit [Peptostreptococcus
           anaerobius 653-L]
 gi|289155931|gb|EFD04597.1| carbamoyl-phosphate synthase, large subunit [Peptostreptococcus
           anaerobius 653-L]
          Length = 1071

 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 38/292 (13%), Positives = 98/292 (33%), Gaps = 31/292 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLV 68
           S  A   AL   G +   I         D D S  L    L  +  ++++     E  ++
Sbjct: 577 SVHAVM-ALRRLGIETIIINNNPETVSTDFDTSDKLYFEPLTEEDVYHIIEKEKPEGVIL 635

Query: 69  Q----------AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV--PVCPSILVNRF 116
           Q            L    +    +       + D+ + ++++    +  P    +     
Sbjct: 636 QFGGQTAIKLAKFLSEKGVKILGTDFKDIDAAEDREKFEELLEKLNINRPKGKGVWSVAE 695

Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
            ++    +  P +++P       G+ +   +  +   L  +   +  + +LI++Y+ G E
Sbjct: 696 GVEVATKLGYPVLVRPSYVLGGQGMEITYDETRLVQYLEDAFERDAINPVLIDKYLTGRE 755

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +    + D    +    +   +       +S  + T     +I  +I +++         
Sbjct: 756 IEVDAICDGKDILIPGIMEHLERAGV---HSGDSITMYPSQRISDNIKEKIYDYTKKMAL 812

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
            +   G+    F+       ++ +E+N +   T     P ++  +G    +L
Sbjct: 813 NLNVVGMVNIQFI--EYKGDLYIIEVNPRASRT----VPYISKVSGVPIVDL 858



 Score = 61.7 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 50/289 (17%), Positives = 102/289 (35%), Gaps = 39/289 (13%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQIDVDRS---------------------VGLV 45
           G ++E + S   G     AL++ G +V  I+ + +                     +   
Sbjct: 21  GQAAEFDYS---GTQACQALKEEGIEVVLINSNPATIMTDQEIADHIYIEPLTLDFIEKT 77

Query: 46  LAHLKPDLAFNVLHGNFGEDG-------LVQAILELLEIPYTHSGILASALSMDKMRSKQ 98
           +   +PD   ++L G  G+ G           IL+   +    + + +     D+   ++
Sbjct: 78  IEKERPD---SILAGMGGQTGLNLAIELHEAGILDKYNVKIIGTSVESIKKGEDRDLFRE 134

Query: 99  VVSSCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
           V+   G PV  S +V      ++    I  P V++P       G  + + +  +   L  
Sbjct: 135 VMKEIGEPVIESDIVTTLDAGLEYALKIGYPVVVRPAYTLGGTGGGIAENEIELREILTH 194

Query: 157 SSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215
               +   Q L+E+ + G  E+   VM D+  +   I V   +       ++  +     
Sbjct: 195 GLELSPVSQCLLEKSIKGWKEIEYEVMRDSKGN--CITVCNMENIDPVGVHTGDSIVVAP 252

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              +    Y+ ++  +     AIG  G        +P S +   +EIN 
Sbjct: 253 SQTLSNLEYQMLRSASLKIIDAIGVEGGCNVQMALNPESLEYAIIEINP 301


>gi|260467368|ref|ZP_05813540.1| acetyl-CoA carboxylase, biotin carboxylase [Mesorhizobium
           opportunistum WSM2075]
 gi|259028828|gb|EEW30132.1| acetyl-CoA carboxylase, biotin carboxylase [Mesorhizobium
           opportunistum WSM2075]
          Length = 457

 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 35/222 (15%), Positives = 79/222 (35%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E   + +      A     DK+ +K+ + + GVP       
Sbjct: 77  AIHPGYGFLSENAAFAEAVENAGLIFVGPSATAIRTMGDKVSAKRTMIAAGVPCVAGSEG 136

Query: 112 LVNRFTMDS---QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL----DLLQSSSWNHGD 164
            + +   +       I  P ++K   GG   G+ +++ +Q++       + ++       
Sbjct: 137 ALPQDEQEVRAIAEAIGYPVIVKAAGGGGGRGMRIVRDEQALMEAVSMAVKEADRAFGNP 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
           Q+ +E++++    +   ++ D       +            K          PA  I  +
Sbjct: 197 QVYLEKFLEQPRHIEIQILADKHGRAVWLGERDCSMQRRHQK-----IIEEAPAPGIARE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              E+  L   A   IG  G    +FL+     +  ++E+N 
Sbjct: 252 AIGEIGDLCARACLTIGYTGAGTFEFLY--EDGRFSFIEMNT 291


>gi|153007384|ref|YP_001368599.1| carbamoyl-phosphate synthase L chain ATP-binding [Ochrobactrum
           anthropi ATCC 49188]
 gi|151559272|gb|ABS12770.1| Carbamoyl-phosphate synthase L chain ATP-binding [Ochrobactrum
           anthropi ATCC 49188]
          Length = 655

 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 40/224 (17%), Positives = 75/224 (33%), Gaps = 22/224 (9%)

Query: 58  LHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
           +H  +G   E+      +E   + +      A      K  +K ++   GVPV P    +
Sbjct: 78  IHPGYGFLSENAGFVDAVEAAGLVFIGPSAKAIRAMGLKDAAKALMEKAGVPVVPGYHGD 137

Query: 115 RFT----MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQL 166
                        I+ P +IK   GG   G+  + +       L     ++ +      +
Sbjct: 138 NQDGAFLKSEADRITYPVLIKARAGGGGKGMRRVDQSVDFAAALDSARREAEASFGDSAV 197

Query: 167 LIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIY 224
           L+E+Y+     +   V GD   +               L+          PA  +  ++ 
Sbjct: 198 LVEKYMTKPRHIEVQVFGDNHGNAV-----HLFERDCSLQRRHQKVIEEAPAPGMTPEMR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSR----KVFWLEINV 264
             +   A  A  AIG  G    +F+ D        + F++E+N 
Sbjct: 253 AAMGEAAVKAALAIGYCGAGTVEFIADVSEGLRPDRFFFMEMNT 296


>gi|56461386|ref|YP_156667.1| acetyl-CoA carboxylase biotin carboxylase subunit [Idiomarina
           loihiensis L2TR]
 gi|56180396|gb|AAV83118.1| Acetyl CoA carboxylase, biotin carboxylase subunit [Idiomarina
           loihiensis L2TR]
          Length = 449

 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 36/222 (16%), Positives = 78/222 (35%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      +E     +         L  DK+ + + +   GVP  P    
Sbjct: 77  AIHPGYGFLAENADFAEQVEQSGFIFVGPTPDLIRLMGDKVSAIKAMKKTGVPCVPGSDG 136

Query: 114 NRFTMDS-----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGD 164
                D         I  P +IK   GG   G+ V++++  +   +     ++ +     
Sbjct: 137 PLDDDDERNKKLAKRIGYPIIIKAAGGGGGRGMRVVREESELLSSITMTQNEARAAFGNP 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E++++    +   V+ D   +   +            K          PA  I  +
Sbjct: 197 VVYMEKFLENPRHVEIQVLADGQGNAIHLGERDCSMQRRHQK-----VVEEAPAPGITPE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + K +      A   +G RG    +FL+   + + +++E+N 
Sbjct: 252 MRKFIGERCAKACVELGYRGAGTFEFLY--ENGEFYFIEMNT 291


>gi|326404852|ref|YP_004284934.1| acetyl-CoA carboxylase biotin carboxylase [Acidiphilium multivorum
           AIU301]
 gi|325051714|dbj|BAJ82052.1| acetyl-CoA carboxylase biotin carboxylase [Acidiphilium multivorum
           AIU301]
          Length = 448

 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 76/220 (34%), Gaps = 18/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     ++E   + +         +  DK+ +K  ++  GVP+ P    
Sbjct: 79  AVHPGYGFLSENADFAEMVEAHGLAFIGPSPTHIRMMGDKITAKTTMADLGVPLVPGSDG 138

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGDQ 165
            +            I  P +IK   GG   G+ V +  + +         ++ +    + 
Sbjct: 139 EVPDVEAAKRVAAEIGCPVLIKAAAGGGGRGMKVARTLEEVEEAFRTARAEAGAAFGNNA 198

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+Y+D    +   V+GD   +V               K      +      I  +  
Sbjct: 199 VYIEKYLDRPRHVELQVLGDNHGNVVHFGERDCSLQRRHQKLLEEAGS----PGITREER 254

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +  +A  A    G R     +FL+     +  ++E+N 
Sbjct: 255 DRLGEIATAALTKFGYRNAGTLEFLY--QDGQFAFIEMNT 292


>gi|313624238|gb|EFR94293.1| pyruvate carboxylase [Listeria innocua FSL J1-023]
          Length = 1146

 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 35/243 (14%), Positives = 82/243 (33%), Gaps = 25/243 (10%)

Query: 35  QIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSM 91
            +D+  ++  +      D     +H  +G   E+       E   I +         +  
Sbjct: 63  YLDI-ENIIEIAKESGAD----AIHPGYGFLSENIEFARRCEQEGIIFVGPKSKHLDMFG 117

Query: 92  DKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK- 146
           DK+++K+      +PV P     +   +   +       P +IK   GG   G+ V++  
Sbjct: 118 DKIKAKEQALLADIPVIPGSDGPVAGIKEVEEFGEKNGYPLMIKASLGGGGRGMRVVESK 177

Query: 147 ---DQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSY 202
               +S      ++ +    D++ +E+ V +   +   ++GD   ++  +          
Sbjct: 178 EHVKESFERASSEAKAAFGNDEVYVEKCVMNPKHIEVQILGDTHGNIVHLFERDCSIQRR 237

Query: 203 ELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
             K        V P   I  ++   +   A    + +        +FL        +++E
Sbjct: 238 HQK-----VVEVAPCNAITSELRSRICDAAVKLMKNVDYINAGTVEFLV--EGDNFYFIE 290

Query: 262 INV 264
           +N 
Sbjct: 291 VNP 293


>gi|299769005|ref|YP_003731031.1| carbamoyl-phosphate synthase, large subunit [Acinetobacter sp. DR1]
 gi|298699093|gb|ADI89658.1| carbamoyl-phosphate synthase, large subunit [Acinetobacter sp. DR1]
          Length = 1076

 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 29/196 (14%), Positives = 74/196 (37%), Gaps = 8/196 (4%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYV 129
           LE    P   +   A   + D+ R +Q++    +    + +V            +  P V
Sbjct: 653 LEEAGTPIIGTSPDAIDRAEDRERFQQMIQRLQLRQPNNSIVKSAEEGISEAAKVGYPLV 712

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  ++ +   L ++   ++   +L+++++ D  E+    + D    
Sbjct: 713 VRPSYVLGGRAMEIVYNEEELKRYLREAVQASNEAPVLLDRFLDDATEVDVDCVSDGKDV 772

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           V    +   +       +S  ++  + P  +  +I  E++R      + +G  G+    F
Sbjct: 773 VIGGIMQHIEQAGI---HSGDSACSIPPYSLSKEIQDEMRRQTVAMAKELGVVGLMNVQF 829

Query: 249 LFDPLSRKVFWLEINV 264
                   V+ LE+N 
Sbjct: 830 AV--KGDDVYVLEVNP 843



 Score = 64.4 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 44/278 (15%), Positives = 93/278 (33%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D              ++V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPSMADATYIEPITWQTVAQIIEKERPDAVLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      +LE   +    +   A   + D+      +   G+    + +
Sbjct: 89  TMGGQTALNCALALDEHGVLEKYNVELIGASKEAIEKAEDRKLFDIAMRKIGLECPKAAI 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +  Q     P +I+P       G  +    +       +    +   QLLI++
Sbjct: 149 AETMEEALAIQSRFGFPVIIRPSFTMGGSGGGIAYNREEFLEICERGFDLSPTHQLLIDE 208

Query: 171 YVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + + +   A+   D           +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCAIENFDPMGVHT----GDSITVAPAQTLTDKEYQLM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P   ++  +E+N 
Sbjct: 265 RNASVAVLREIGVETGGSNVQFGINPKDGRMVVIEMNP 302


>gi|229592648|ref|YP_002874767.1| carbamoyl phosphate synthase large subunit [Pseudomonas fluorescens
           SBW25]
 gi|229364514|emb|CAY52369.1| carbamoyl-phosphate synthase large chain [Pseudomonas fluorescens
           SBW25]
          Length = 1073

 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 29/196 (14%), Positives = 74/196 (37%), Gaps = 8/196 (4%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYV 129
           LE   +P   +   A   + D+ R +Q+V    +   P+  V        +   I  P V
Sbjct: 653 LEAAGVPIIGTSPDAIDRAEDRERFQQMVERLNLRQPPNATVRSEDEAIRAASKIGYPLV 712

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLD 188
           ++P        + ++ ++  +   L  +   ++   +L++ +++  IE+    + D +  
Sbjct: 713 VRPSYVLGGRAMEIVYEEDELKRYLRDAVKVSNDSPVLLDHFLNCAIEMDVDAVCDGTDV 772

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           V    +   +       +S  ++  + P  +P  I  E++         +G  G+   + 
Sbjct: 773 VIGAIMQHIEQAGV---HSGDSACSLPPYSLPAHIQDEMREQVKKMALELGVVGL--MNV 827

Query: 249 LFDPLSRKVFWLEINV 264
                   ++ +E+N 
Sbjct: 828 QLALQGEDIYVIEVNP 843



 Score = 64.4 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 44/278 (15%), Positives = 97/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D D            ++V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPDMADATYIEPIKWQTVAKIIEKERPDALLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +    + +LE   +    +       + D+ R  + + S G+    S +
Sbjct: 89  TMGGQTALNCALDLEREGVLEKFGVEMIGANADTIDKAEDRSRFDKAMKSIGLDCPRSGI 148

Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     +     +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHSMEEANSVLERLGFPCIIRPSFTMGGTGGGIAYNREEFEEICARGLDLSPTKELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D   + +   ++   D           +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKKDNCIIVCSIENFDPMGVHT----GDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F   P + ++  +E+N 
Sbjct: 265 RNASLAVLREIGVETGGSNVQFGICPDTGRMVVIEMNP 302


>gi|239926869|ref|ZP_04683822.1| acyl-CoA carboxylase complex A subunit [Streptomyces ghanaensis
           ATCC 14672]
          Length = 518

 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 72/221 (32%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLV-QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP----VC 108
            +H  +G   E+    QA+L+   + +      A     DK+ ++ +    G P      
Sbjct: 3   AVHPGYGFLSENAAFAQAVLD-AGLIWIGPPPAAIRDLGDKVAARHIAQRAGAPLVAGTP 61

Query: 109 PSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL----DLLQSSSWNHGD 164
             +      +        P  IK   GG   G+ V +  + IP      + ++ +     
Sbjct: 62  DPVSGAEEVLAFAEQHGLPIAIKAAFGGGGRGLKVARTREEIPELYDSAVREAVAAFGRG 121

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           +  +E+Y+D    +    + D   +V  ++           K             +    
Sbjct: 122 ECFVERYLDRPRHVETQCLADTHGNVVVVSTRDCSLQRRHQK----LVEEAPAPFLTEAQ 177

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             E+ R +    +  G  G    +FL       V +LE+N 
Sbjct: 178 TAELYRASKAILREAGYVGAGTVEFLV-GADGTVSFLEVNT 217


>gi|229162822|ref|ZP_04290779.1| Carbamoyl-phosphate synthase large chain [Bacillus cereus R309803]
 gi|228620704|gb|EEK77573.1| Carbamoyl-phosphate synthase large chain [Bacillus cereus R309803]
          Length = 1018

 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 26/221 (11%), Positives = 80/221 (36%), Gaps = 20/221 (9%)

Query: 68  VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLIS 125
           + A LE   +    + +     + D+ + +  ++  G+P             +     I 
Sbjct: 588 LAAKLEAHGVKILGTSLEDLDRAEDRDKFEAALTQLGIPQPVGKTATTVEQAVAIAEEIG 647

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            P +++P        + ++ + + +   +  +   +    +LI++Y+ G E+    + D 
Sbjct: 648 YPVLVRPSYVLGGRAMEIVYRQEELLHYMKNAVKVHADHPVLIDRYMVGKEIEVDAISDG 707

Query: 186 S---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCR 241
               +      + ++  +S        +S  V P + +   + +++        + +   
Sbjct: 708 ENVFIPGIMEHIERAGVHS-------GDSIGVYPPQSLSEKLKEQIIEHTIALGKGLNIV 760

Query: 242 GISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277
           G+    F+      +V+ +E+N       P ++ ++  P  
Sbjct: 761 GLLNIQFVVFK--DQVYVIEVNPRASRTVPFLSKITGVPMA 799



 Score = 65.9 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 42/260 (16%), Positives = 96/260 (36%), Gaps = 13/260 (5%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMR 95
             V  ++   +PD     L G  G +  V+     ILE   +    + + A   + D+  
Sbjct: 18  EFVSRIIRKERPDAILPTLGGQTGLNMAVELAKSGILEECGVEILGTKLSAIEQAEDRDL 77

Query: 96  SKQVVSSCGVPVCPSILVNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153
            + ++     P+  S +++      +    I  P +++P       G  +   ++ +   
Sbjct: 78  FRTLMQDLNEPIPSSTIIHTLEEAHEFVKEIGYPVIVRPAFTMGGTGGGICSNEEELIEI 137

Query: 154 LLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212
           +      +   Q L+E+ + G  E+   VM D++ +   I V   +       ++  +  
Sbjct: 138 VSGGLKHSPVTQCLLEKSIAGCKEIEYEVMRDSNDNA--IVVCNMENIDPVGVHTGDSIV 195

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
                 +    Y+ ++  +    +A+G  G        DP S + + +E+N  P ++  S
Sbjct: 196 VAPSQTLSDREYQMLRNTSLRIIRALGIEGGCNVQLALDPHSFQYYVIEVN--PRVSRSS 253

Query: 273 IFPEMAAYAGYSFRELLLWM 292
                +   GY   +L   +
Sbjct: 254 --ALASKATGYPIAKLAAKI 271


>gi|19553952|ref|NP_601954.1| phosphoribosylglycinamide formyltransferase 2 [Corynebacterium
           glutamicum ATCC 13032]
 gi|62391595|ref|YP_226997.1| phosphoribosylglycinamide formyltransferase 2 [Corynebacterium
           glutamicum ATCC 13032]
 gi|145296758|ref|YP_001139579.1| phosphoribosylglycinamide formyltransferase 2 [Corynebacterium
           glutamicum R]
 gi|172044397|sp|A4QHG1|PURT_CORGB RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|172045811|sp|Q8NM23|PURT_CORGL RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|41326937|emb|CAF20781.1| PHOSPHORIBOSYLGLYCINAMIDE FORMYLTRANSFERASE [Corynebacterium
           glutamicum ATCC 13032]
 gi|140846678|dbj|BAF55677.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 408

 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 45/276 (16%), Positives = 100/276 (36%), Gaps = 36/276 (13%)

Query: 19  GKACASALEDAGFKVSQID----------------VDRSVGLVLAHL----KPDLAFNVL 58
           GK  A A +  G +V  +D                +D +    +  L    +PD     +
Sbjct: 27  GKEVAIAFQRLGLEVHAVDRYEHAPAHQVAHFSYVIDMTDAAQVRELVERVRPDFVIPEI 86

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKM-RSKQVVSSCGVPVCPSILVNRFT 117
                 D LV+  +E   +        A+ L+M++    K      G+P       + F 
Sbjct: 87  E-ALATDELVK--IEEEGLATIVPTARAAKLTMNREGIRKLAAEELGLPTSNYEFCSTFE 143

Query: 118 M--DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD--LLQSSSWNHGDQLLIEQYVD 173
               +   +  P V+KP+   S  G  V++    +        S +     ++++E +V+
Sbjct: 144 EFSAAAEKLGYPNVVKPVMSSSGKGQSVLRSSDDLQAAWDYAMSGARVANSRVIVEAFVE 203

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHV---LPAKIPLDIYKEVQRL 230
             +    ++   S+D T      + ++   + +   +  +V    P ++     +  + +
Sbjct: 204 -FDYEITLLTVRSIDPTTSKP--ATWFCEPIGHRQEDGDYVESWQPMEMTPRALENARSV 260

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
           A     A+G RG+   +         V++ E++ +P
Sbjct: 261 AARITNALGGRGVFGVELFV--SGDDVYFSEVSPRP 294


>gi|332158577|ref|YP_004423856.1| phosphoribosylglycinamide formyltransferase 2 [Pyrococcus sp. NA2]
 gi|331034040|gb|AEC51852.1| phosphoribosylglycinamide formyltransferase 2 [Pyrococcus sp. NA2]
          Length = 429

 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 47/296 (15%), Positives = 103/296 (34%), Gaps = 44/296 (14%)

Query: 19  GKACASALEDAGFKVSQID-------------------VDRSVGL-VLAHLKPDLAFNVL 58
           GK  A   +  G +V  +D                   +D+     V+   KPD     +
Sbjct: 28  GKEIAIEAQRLGVEVVAVDRYANAPAMQVAHRSYVGNMMDKDFLWSVVEREKPDAIIPEI 87

Query: 59  HGNFGEDGLVQAILELLEIPY-THSGILASALSMDKMRSKQ-VVSSCGVPVCPSILVNRF 116
                    + A+ E  +  Y       A+ ++M + R ++ +V    VP    +     
Sbjct: 88  EAIN-----LDALFEFEKDGYFVVPNAKATWIAMHRERLRETLVKEAKVPTSRYMYATTL 142

Query: 117 TM--DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS--SWNHGDQLLIEQYV 172
               ++   I  P   K +   S  G   ++  + IP    ++   +    +++++E+++
Sbjct: 143 DELYEACEKIGYPCHTKAIMSSSGKGSYFVRGPEDIPKAWEEAKTKARGSAEKIIVEEHI 202

Query: 173 DGIELTCGVMG----DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           D  ++    +     D + ++          Y  +  Y +       PA+I     +EV 
Sbjct: 203 D-FDIEVTELAVRHFDENGEIVTTFPKPVGHYQIDGDYHASW----QPAEISEKAEREVY 257

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
           R+A      +G  G+   +        KV+  E++ +P      +    +   G+S
Sbjct: 258 RIAKRITDVLGGLGLFGVEMFV--KGDKVWANEVSPRP--HDTGMVTLASHPTGFS 309


>gi|300784793|ref|YP_003765084.1| acetyl/propionyl-CoA carboxylase, biotin carboxylase subunit fused
           with biotin carboxyl carrier subunit [Amycolatopsis
           mediterranei U32]
 gi|299794307|gb|ADJ44682.1| acetyl/propionyl-CoA carboxylase, biotin carboxylase subunit fused
           with biotin carboxyl carrier subunit [Amycolatopsis
           mediterranei U32]
          Length = 649

 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 38/217 (17%), Positives = 81/217 (37%), Gaps = 20/217 (9%)

Query: 57  VLHGNFG---EDGLV-QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            +H  +G   E+    +A+L+   + +      A      K+ SK+++++ GVPV     
Sbjct: 77  AVHPGYGFLSENAAFARAVLD-AGLTWVGPPPEAIETMGSKVESKRLMAAAGVPV----- 130

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN----HGDQLLI 168
           ++     S      P ++K   GG   G+ V++    +   +  +S+          +  
Sbjct: 131 LSELDPASVTSDDLPLLVKASAGGGGRGMRVVRSLDGLAEAVEGASAEAGSAFGDPTVFC 190

Query: 169 EQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227
           E+Y++ G  +   V+ D    V  +   +        K             +   + +E+
Sbjct: 191 ERYLETGRHIEVQVLADRHGTVWAVGERECSIQRRHQK----VVEEAPSPFVDAAMREEL 246

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              A  A +AI   G    +F       + ++LE+N 
Sbjct: 247 FEAARKAAKAIDYVGAGTVEF-LAGPDGRFYFLEMNT 282


>gi|295696490|ref|YP_003589728.1| pyruvate carboxylase [Bacillus tusciae DSM 2912]
 gi|295412092|gb|ADG06584.1| pyruvate carboxylase [Bacillus tusciae DSM 2912]
          Length = 1152

 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 76/221 (34%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+    A  E   I +            DK+ ++Q+    G+PV P    
Sbjct: 83  AIHPGYGFLAENARFAARCEEEGIAFIGPRPQHLEAFGDKVTARQMAVEAGLPVIPGTPE 142

Query: 114 N----RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
                +  +        P ++K   GG   G+ V++  + +   L  + S          
Sbjct: 143 PVRQLQDALRFAREHGFPLIVKAAAGGGGRGMRVVRHKEDLEEALRMARSEAEKSFGDGT 202

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDI 223
           + +E++++    +   ++GD   ++  +            K        + PA  +    
Sbjct: 203 VYLEKFLEHPKHIEVQILGDRHGNLVHLFERDCSIQRRHQK-----VVEIAPALTLTEPQ 257

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +   A    +  G  G    +FL  P     +++E+N 
Sbjct: 258 RQAICDAALRLMRRAGYVGAGTVEFLVAP-DGSFYFIEVNP 297


>gi|237798552|ref|ZP_04587013.1| carbamoyl phosphate synthase large subunit [Pseudomonas syringae
           pv. oryzae str. 1_6]
 gi|331021405|gb|EGI01462.1| carbamoyl phosphate synthase large subunit [Pseudomonas syringae
           pv. oryzae str. 1_6]
          Length = 1073

 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 28/196 (14%), Positives = 74/196 (37%), Gaps = 8/196 (4%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYV 129
           LE   +P   +   A   + D+ R + +V    +   P+  V        +   I  P V
Sbjct: 653 LEAAGVPIIGTSPDAIDRAEDRERFQHMVERLNLRQPPNATVRSEDEAIRAAAKIGYPLV 712

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLD 188
           ++P        + ++ ++  +   L ++   ++   +L++ +++  IE+    + D +  
Sbjct: 713 VRPSYVLGGRAMEIVYQEDELKRYLREAVQVSNDSPVLLDHFLNCAIEMDVDAVCDGTDV 772

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           V    +   +       +S  ++  + P  +P  I  E++         +G  G+   + 
Sbjct: 773 VIGAIMQHIEQAGV---HSGDSACSLPPYSLPAHIQDEMREQVKKMALELGVVGL--MNV 827

Query: 249 LFDPLSRKVFWLEINV 264
                   ++ +E+N 
Sbjct: 828 QLALQGEDIYVIEVNP 843



 Score = 63.2 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 96/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +              D         ++V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPAMADATYIEPIKWQTVAKIIEKERPDALLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +    + +LE   +    +       + D+ R  + + S G+    S +
Sbjct: 89  TMGGQTALNCALDLEREGVLEKFGVEMIGANADTIDKAEDRSRFDKAMKSIGLACPRSGI 148

Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     +     +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHSMEEANAVLEKLGFPCIIRPSFTMGGTGGGIAYNREEFEEICARGLDLSPTKELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D   + +   ++   D           +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKKDNCIIVCSIENFDPMGVHT----GDSITVAPAQTLTDKEYQIL 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F   P + ++  +E+N 
Sbjct: 265 RNASLAVLREIGVETGGSNVQFGICPDTGRMVVIEMNP 302


>gi|237786280|ref|YP_002906985.1| phosphoribosylglycinamide formyltransferase 2 [Corynebacterium
           kroppenstedtii DSM 44385]
 gi|237759192|gb|ACR18442.1| phosphoribosylglycinamide formyltransferase 2 [Corynebacterium
           kroppenstedtii DSM 44385]
          Length = 401

 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 50/282 (17%), Positives = 108/282 (38%), Gaps = 43/282 (15%)

Query: 19  GKACASALEDAGFKVSQID----------------VDRSVGLVLAHL----KPDLAFNVL 58
           GK  A A +  G +V  +D                +D +    + +L    +PD     +
Sbjct: 9   GKEVAIAFQRLGVEVLAVDRYDGAPAHHVAQFHYVIDMTDPDAIKNLVDDVRPDFIVPEI 68

Query: 59  HGNFGEDGLVQAILELLEIPYTH-SGILASALSMDKMRSKQVV-SSCGVPVCPSILVNRF 116
                 DG     L  LE  YT      A+ ++M++   +++     G+P       +  
Sbjct: 69  EAI-ATDG-----LRDLESDYTVIPTAEATRVTMNREEVRRLAGEDLGLPTSGYAFASTR 122

Query: 117 TM--DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD--LLQSSSWNHGDQLLIEQYV 172
               D+   +  P V+KP+   S  G  V+   + +        S +  +  ++++EQ+V
Sbjct: 123 DEFDDAVDAMGFPCVVKPVMSSSGKGQSVLNGPEDLDEAWDYAMSGARVNQARVIVEQFV 182

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHV---LPAKIPLDIYKEVQR 229
           D  +    ++   ++D +   V  + ++   + +   +  +V    PA +     +  + 
Sbjct: 183 D-FDYEITLLTVRAVDPSTGKV--ATWFCEPVGHRQHSGDYVESWQPAPMSDAAAENARS 239

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP---GM 268
           +A     A+G RG+   +         V++ E++ +P   GM
Sbjct: 240 IAARVTNALGGRGVFGVELFV--KGDDVYFSEVSPRPHDTGM 279


>gi|76802886|ref|YP_330981.1| carbamoyl phosphate synthase large subunit [Natronomonas pharaonis
           DSM 2160]
 gi|76558751|emb|CAI50344.1| carbamoyl-phosphate synthase (glutamine-hydrolyzing), large subunit
           [Natronomonas pharaonis DSM 2160]
          Length = 1077

 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 43/294 (14%), Positives = 99/294 (33%), Gaps = 39/294 (13%)

Query: 24  SALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAI--- 71
            AL + G     +         D D S GL    +  +   +++      DG++      
Sbjct: 607 RALREEGIDAHVVNNNPETVSTDYDTSDGLFFEPITAEEVADIIEETDA-DGVMVQFGGQ 665

Query: 72  ------------LELLEIPY--THSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--R 115
                       LE   +      + + A  L+ D+ R   ++   G+            
Sbjct: 666 TSVNVGEPLEDELERRGLDCDIMGTSVEAMDLAEDRDRFNALMDELGISQPEGGTATSKA 725

Query: 116 FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DG 174
             +D  H I  P +++P        + V+  D  +   + ++   +    +L++ ++ D 
Sbjct: 726 EALDLAHDIGYPVLVRPSYVLGGRAMDVVYSDAELEEYIEEAVRVSPDKPILVDDFLADA 785

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
           +EL    + D    +    +   +       +S  ++  + P  +  D+ + V+ +    
Sbjct: 786 VELDVDAVSDGEDVIIGGIMEHVEAAGV---HSGDSACMIPPRSLSQDVLERVREVTLDI 842

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
            + +   G+   +        +VF LE N +   T     P ++   G    +L
Sbjct: 843 ARGLDTVGL--LNVQLAVRDGEVFVLEANPRSSRT----VPFVSKATGVPIAKL 890



 Score = 50.5 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 49/295 (16%), Positives = 102/295 (34%), Gaps = 47/295 (15%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQID---------------------VDRSVGLV 45
           G ++E + S   G     AL++ G +V  ++                        ++  V
Sbjct: 19  GQAAEFDYS---GAQACRALQEEGARVVLVNSNPATIMTDPEMADKVYVEPITTDAIAEV 75

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +    PD     L G  G +   +     +L+   +    + +     + D+   ++ + 
Sbjct: 76  IRKEDPDGVIAGLGGQTGLNVTAELAEEGVLDEHGVEIMGTPLDTIYATEDRDLFRERMK 135

Query: 102 SCGVPVCPSILV---NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS 158
             G PVC S  +   +      + +   P + +        G  V+   + +     +  
Sbjct: 136 DIGEPVCRSETISSMDEVEDAVESVGGLPVIARTAYTLGGSGSGVVDDMEELREIARKGF 195

Query: 159 SWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKS-DFYSYELKYSSLNSTHVLP 216
             +   ++ I + + G +EL   VM DA      I   ++ D            ST V P
Sbjct: 196 QLSRNHEVQITESIAGWVELEYEVMRDADDSCIIICNMENIDPMGIHT----GESTVVTP 251

Query: 217 AK-IPLDIYKEVQRLAFLAHQAIGCRGIS------RSDFLFDPLSRKVFWLEINV 264
           ++ IP + ++E++  A    + +G  G        R D      S +   +E+N 
Sbjct: 252 SQVIPDEAHQEMRNSALKVIRELGIEGGCNIQHAWRDD---GTPSGEYRVVEVNP 303


>gi|307731029|ref|YP_003908253.1| acetyl-CoA carboxylase, biotin carboxylase [Burkholderia sp.
           CCGE1003]
 gi|307585564|gb|ADN58962.1| acetyl-CoA carboxylase, biotin carboxylase [Burkholderia sp.
           CCGE1003]
          Length = 455

 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 34/222 (15%), Positives = 78/222 (35%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         +  DK+ +KQ +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAERVEQSGFTFIGPRPETIRMMGDKVTAKQTMIKTGVPCVPGSEG 136

Query: 112 ---LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
                 +  +     +  P +IK   GG   G+ V+  + ++   +     ++       
Sbjct: 137 ALPEDPKEIVKIARQVGYPVIIKAAGGGGGRGMRVVHTEAALVNAVNMTREEAGRAFGNP 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
           Q+ +E++++    +   V+ D+  +   +            K          PA  I   
Sbjct: 197 QVYMEKFLENPRHIEIQVLSDSFKNAIWLGERDCSMQRRHQK-----VIEEAPAPGIARR 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +   +      A + +G  G    +FL+   + + +++E+N 
Sbjct: 252 LIDRIGDRCADACKKMGYLGAGTFEFLY--ENGEFYFIEMNT 291


>gi|302865333|ref|YP_003833970.1| carbamoyl-phosphate synthase subunit L [Micromonospora aurantiaca
           ATCC 27029]
 gi|302568192|gb|ADL44394.1| Carbamoyl-phosphate synthase L chain ATP-binding [Micromonospora
           aurantiaca ATCC 27029]
          Length = 583

 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 72/221 (32%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLV-QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            +H  +G   E+    QA+++   + +      A     DK+ ++ +    G P+ P   
Sbjct: 76  AVHPGYGFLSENADFAQAVID-AGLTWIGPTPQAIRDLGDKVTARHIAQRAGAPLVPGTP 134

Query: 113 VNRFTMDSQHLI----SPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSWNHGD 164
                 D           P  IK   GG   G+ V +  + IP        ++ +     
Sbjct: 135 DPVGNADEVMAFAVDHGLPVAIKAAFGGGGRGLKVARTMEEIPHLFESATREAVAAFGRG 194

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           +  +E+Y+D    +   V+ D   +V  +            K             +    
Sbjct: 195 ECFVERYLDKPRHVEAQVLADQHGNVIVVGTRDCSLQRRHQK----LVEEAPAPFLTDAQ 250

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             ++   A    +  G  G    ++L   +   + +LE+N 
Sbjct: 251 RAQIHDSAKAICREAGYHGAGTVEYLV-GVDGTISFLEVNT 290


>gi|332663544|ref|YP_004446332.1| pyruvate carboxylase [Haliscomenobacter hydrossis DSM 1100]
 gi|332332358|gb|AEE49459.1| pyruvate carboxylase [Haliscomenobacter hydrossis DSM 1100]
          Length = 1151

 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 35/240 (14%), Positives = 87/240 (36%), Gaps = 26/240 (10%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRS 96
           + +  V    + D     +H  +G   E+          +I +            DK+ +
Sbjct: 71  KEILRVAKENEVD----AIHPGYGFLSENVDFARACREADITFIGPDPEIMDQLGDKIAA 126

Query: 97  KQVVSSCGVPVCPSILVN----RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152
           K +    G+ + P   ++       +     I  P +IK   GG   G+ V++ D ++  
Sbjct: 127 KNIARKTGISLIPDSELDLSSKEIALAEARRIGYPVIIKAASGGGGRGMRVVRDDDTLLK 186

Query: 153 DLLQS-----SSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
           +  ++     +++     L +E++++    +   ++GD   ++  +           ++ 
Sbjct: 187 EYTEAGNEALTAFG-DGTLFLEKFIERPKHIEVQILGDRHGNIVHLYE-----RDCSIQR 240

Query: 207 SSLNSTHVLP-AKIPLD-IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
                  + P   I  +    ++   A    +A+G       +FL D     V+++E+N 
Sbjct: 241 RFQKVVEIAPGVSIRKEGTRDKLFAYALKLARAVGYNNAGTVEFLLDEEEN-VYFIEVNP 299


>gi|325479883|gb|EGC82968.1| conserved domain protein [Anaerococcus prevotii ACS-065-V-Col13]
          Length = 413

 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 31/176 (17%), Positives = 62/176 (35%), Gaps = 4/176 (2%)

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNR-FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147
           L+ +K+  K      G+P+ P+  V      D    I  P V KP     S GI +   +
Sbjct: 96  LATNKLIFKNTCVEYGLPITPTYKVTDIMDKDQTKDIEYPVVTKPTDNNGSTGITICNDE 155

Query: 148 QSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYS 207
           +++      +   +   ++LIE+ ++            +  V    +   +      K +
Sbjct: 156 KTLIKGYNFAKKSSKKGEVLIEKKMEFEHSLISHYTAQNGKVIFCGLTDKESKKINKKSA 215

Query: 208 SLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEI 262
            + S   +P+K+      EV        + +G   G    +  +D      +  EI
Sbjct: 216 PVMSIQFMPSKLTNKFIDEVNEGIINMLEGLGIEYGPIWIEIFYD--DNGFYLNEI 269


>gi|319787245|ref|YP_004146720.1| carbamoyl-phosphate synthase L chain ATP-binding protein
           [Pseudoxanthomonas suwonensis 11-1]
 gi|317465757|gb|ADV27489.1| Carbamoyl-phosphate synthase L chain ATP-binding protein
           [Pseudoxanthomonas suwonensis 11-1]
          Length = 674

 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 78/221 (35%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      +    + +      A      K  +KQ++++ GVPV P    
Sbjct: 82  AIHPGYGFLSENAGFAEAVAAAGLVFIGPPASAMQRMGSKAGAKQLMAAAGVPVVPGYNG 141

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGD 164
              +             P ++K   GG   G+ V+   +     L        +++    
Sbjct: 142 EDQSAATLAAEARRTGFPLMVKAAHGGGGKGMRVVHAPEDFAAALESCQREARNAFGRD- 200

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           ++L+E+YV     +   V  D+   V  +        S + +Y  +         +   +
Sbjct: 201 RVLLERYVRSPRHIEIQVFADSHGQVIHL---NERECSAQRRYQKVL-EEAPSPFLTPQL 256

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              +   A  A +AIG       +F+ DP     +++EIN 
Sbjct: 257 RAAMGEAAVAAARAIGYVNAGTVEFIVDP-DGNFYFMEINT 296


>gi|255318890|ref|ZP_05360116.1| carbamoyl-phosphate synthase, large subunit [Acinetobacter
           radioresistens SK82]
 gi|262378855|ref|ZP_06072012.1| carbamoyl-phosphate synthase, large subunit [Acinetobacter
           radioresistens SH164]
 gi|255304146|gb|EET83337.1| carbamoyl-phosphate synthase, large subunit [Acinetobacter
           radioresistens SK82]
 gi|262300140|gb|EEY88052.1| carbamoyl-phosphate synthase, large subunit [Acinetobacter
           radioresistens SH164]
          Length = 1076

 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 31/196 (15%), Positives = 75/196 (38%), Gaps = 8/196 (4%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQHLISPPYV 129
           LE    P   +   A   + D+ R +Q++    +    + +V      M     +  P V
Sbjct: 653 LEEAGAPIIGTSPDAIDRAEDRERFQQMIQRLQLRQPNNSIVKSAEEGMAEAAKVGYPLV 712

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  D+ +   L  +   ++   +L+++++ D IE+    + D    
Sbjct: 713 VRPSYVLGGRAMEIVYNDEELKRYLRDAVQASNEAPVLLDRFLDDAIEVDVDCVSDGKDV 772

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           V    +   +       +S  ++  + P  +  ++  E++R      + +G  G+    F
Sbjct: 773 VIGGIMQHIEQAGI---HSGDSACSIPPYSLSKEVQDEMRRQTIAMAKELGVIGLMNVQF 829

Query: 249 LFDPLSRKVFWLEINV 264
                   V+ LE+N 
Sbjct: 830 AV--KGDDVYILEVNP 843



 Score = 66.3 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 45/278 (16%), Positives = 95/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +              D         ++V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPAMADATYIEPITWQTVAAIIEKERPDAVLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      +LE   +    +   A   + D+    Q +   G+    + +
Sbjct: 89  TMGGQTALNCALALDANGVLEKYNVELIGATKEAIEKAEDRKLFDQAMRKIGLECPKAAI 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  ++ Q     P +I+P       G  +    +       +    +   QLLI++
Sbjct: 149 AESMEEALEIQARFGFPVIIRPSFTMGGSGGGIAYNREEFLEICERGFDLSPTKQLLIDE 208

Query: 171 YVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + + +   A+   D           +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCAIENFDPMGVHT----GDSITVAPAQTLTDKEYQLM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P   ++  +E+N 
Sbjct: 265 RNASLAVLREIGVETGGSNVQFGINPKDGRMVIIEMNP 302


>gi|225569446|ref|ZP_03778471.1| hypothetical protein CLOHYLEM_05531 [Clostridium hylemonae DSM
           15053]
 gi|225161654|gb|EEG74273.1| hypothetical protein CLOHYLEM_05531 [Clostridium hylemonae DSM
           15053]
          Length = 444

 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 74/221 (33%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  FG   E+     + E   I +        A   +K  ++  +++ GVPV P    
Sbjct: 77  AIHPGFGFLSENSKFAELCEQCSITFIGPDSKVIARLGNKQEARNTMTAAGVPVIPGSTE 136

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS-----SSWNHGD 164
             F  +    +   I  P ++K   GG   G+ V +           +      ++   +
Sbjct: 137 PIFDAETGAAAADEIGYPVIVKAALGGGGKGMRVAETPADFLQAFQTAQKETQMAFG-DN 195

Query: 165 QLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            + IE +V     +   ++ D+   V  +            K             +   +
Sbjct: 196 TMYIEHFVQQPRHIEFQILADSQGHVIHLGERDCSIQRNHQKMI----EESPSVALDDGL 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            K++   A  A +A G       +FL +      +++E+N 
Sbjct: 252 RKKMGDAAVKAAKAAGYVNAGTIEFLLEKSGN-FYFMEMNT 291


>gi|167647125|ref|YP_001684788.1| carbamoyl-phosphate synthase subunit L [Caulobacter sp. K31]
 gi|167349555|gb|ABZ72290.1| Carbamoyl-phosphate synthase L chain ATP-binding [Caulobacter sp.
           K31]
          Length = 669

 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 69/220 (31%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H  FG   E+           I +      A +   DK+ SK+     GV   P  + 
Sbjct: 77  AVHPGFGFLSENASFAQRCADEGIVFIGPNPGAISAMGDKIESKKFAQKAGVSCVPGHIG 136

Query: 113 ---VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS----IPLDLLQSSSWNHGDQ 165
                   +     +  P +IK   GG   GI V    Q      P    ++ +    D+
Sbjct: 137 EIDDTAHAVTISEQVGYPVMIKASAGGGGKGIRVAWNRQDVEEGFPAVRAEAKASFGDDR 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+++     +   V+GD   +V  +   +        K             +     
Sbjct: 197 IFIEKFIQSPRHIEIQVLGDKHGNVVHLFERECSIQRRNQK----VIEEAPSPLLDEATR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +   A    +A+        +F      +  F+LE+N 
Sbjct: 253 AAMGAQAVALAKAVNYDSAGTVEF-VAGQDKSFFFLEMNT 291


>gi|59712094|ref|YP_204870.1| phosphoribosylglycinamide formyltransferase 2 [Vibrio fischeri
           ES114]
 gi|81310935|sp|Q5E4R4|PURT_VIBF1 RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|59480195|gb|AAW85982.1| phosphoribosylglycinamide formyltransferase 2 [Vibrio fischeri
           ES114]
          Length = 391

 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 50/276 (18%), Positives = 99/276 (35%), Gaps = 43/276 (15%)

Query: 19  GKACASALEDAGFKVSQID----------------VD----RSVGLVLAHLKPDLAFNVL 58
           GK  A   +  GF+V  +D                +D     ++  V+   +PD     +
Sbjct: 22  GKEVAIECQRLGFEVIAVDRYLNAPAMQVAHRSYAIDMLDANALEEVINKEQPDFVVPEI 81

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKM-RSKQVVSSCGVPVCPSILVNRFT 117
                 D LV+  LE   +        A+ L+M++    +       +P  P   V+ + 
Sbjct: 82  EAI-ATDKLVE--LEKQGLNVV-PTANATKLTMNREGIRRLAAEELQLPTSPYRFVDSYE 137

Query: 118 M--DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL--DLLQSSSWNHGDQLLIEQYVD 173
              ++   +  P VIKP+   S  G  VIK +  I    D  Q    +   ++++E +VD
Sbjct: 138 ELVEAVKFVGMPCVIKPVMSSSGKGQSVIKTEADIRTSWDYAQDGGRSGAGRVIVEGFVD 197

Query: 174 GIELTCGVMGDASLDVTEIAVP---KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
             +    ++   ++D      P   + +   Y   +         P  +     K+ Q  
Sbjct: 198 -FDYEISLLTVRAVDGVHFCAPIGHRQEDGDYRESW--------QPQVMTEAALKQAQNA 248

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
           A     A+G  G+   +         +++ E++ +P
Sbjct: 249 AEKVVNALGGYGLFGVELFI--KGDNIYFNEVSPRP 282


>gi|52424475|ref|YP_087612.1| phosphoribosylglycinamide formyltransferase 2 [Mannheimia
           succiniciproducens MBEL55E]
 gi|52306527|gb|AAU37027.1| PurT protein [Mannheimia succiniciproducens MBEL55E]
          Length = 395

 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 53/315 (16%), Positives = 107/315 (33%), Gaps = 52/315 (16%)

Query: 19  GKACASALEDAGFKVSQID--------------------VDRSVGLVLAHLKPDLAFNVL 58
           GK     L+  G +V  +D                       ++  ++   +PD     +
Sbjct: 26  GKEVVIELQRLGVEVIAVDRYKNAPAQQVAHRSYTISMLDGEALKALVEKERPDYIVPEV 85

Query: 59  HGNFGEDGLVQAILELLEIPYTH-SGILASALSMDKM-RSKQVVSSCGVPVCPSILVNRF 116
                E      ++EL +  +T      A+ L+M++    +      G+P      V+ F
Sbjct: 86  -----EAIATATLVELEQKGFTVVPTAKATQLTMNREGIRRLAAEELGLPTSNYQFVDNF 140

Query: 117 TM--DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH--GDQLLIEQYV 172
           T    +   I  P V+KP+   S  G  +IK    I      +         ++++E +V
Sbjct: 141 TDFKSAVENIGIPCVVKPIMSSSGHGQSIIKSFDQIQQAWDYAQQGGRAGAGRVIVEGFV 200

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLA 231
              +    ++    +  T    P         +  + +      P  +     ++ Q++A
Sbjct: 201 K-FDYEITLLTVRHIGGTSFLAPIG------HRQQNGDYRESWQPQAMSEIALQKAQQVA 253

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP---GMT-----PVSIFPEMAAYA-G 282
                A+G RGI   +        +V + E++ +P   GM       +S F   A    G
Sbjct: 254 EKITSALGGRGIFGVEMFV--CGDEVIFNEVSPRPHDTGMVTLISQELSEFALHARAILG 311

Query: 283 YSFRELLLWMVEDAS 297
               E+   ++  A+
Sbjct: 312 LPIPEI--NLISPAA 324


>gi|50085901|ref|YP_047411.1| carbamoyl-phosphate synthase, large subunit [Acinetobacter sp.
           ADP1]
 gi|49531877|emb|CAG69589.1| carbamoyl-phosphate synthase, large subunit [Acinetobacter sp.
           ADP1]
          Length = 1077

 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 45/278 (16%), Positives = 96/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D              ++V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPSMADATYIEPITWQTVAQIIEKERPDAVLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      +LE   +    +   A   + D+    Q +   G+    + +
Sbjct: 89  TMGGQTALNCALALDENGVLEKYGVELIGASKDAIEKAEDRKLFDQAMRKIGLECPKAAI 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
               +  ++ Q     P +I+P       G  +    +       +    +   QLLI++
Sbjct: 149 AENIQEALEIQSKFGFPVIIRPSFTMGGSGGGIAYNREEFLEICERGFDLSPTHQLLIDE 208

Query: 171 YVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + + +   A+   D           +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCAIENFDPMGVHT----GDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P   ++  +E+N 
Sbjct: 265 RNASIAVLREIGVETGGSNVQFGINPKDGRMVVIEMNP 302



 Score = 63.2 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 31/196 (15%), Positives = 71/196 (36%), Gaps = 8/196 (4%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQHLISPPYV 129
           LE    P   +   A   + D+ R +Q++    +    + +V      M     +  P V
Sbjct: 653 LEEAGTPIIGTSPDAIDRAEDRERFQQMIQRLQLRQPNNSIVKSAEEGMAEASKVGYPLV 712

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  D  +   L  +   ++   +L++ ++ D  E+    + D    
Sbjct: 713 VRPSYVLGGRAMEIVYNDDELKRYLRDAVQASNEAPVLLDHFLDDATEVDVDCVSDGKDV 772

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           V    +   +       +S  ++  + P  +   I  E++R      + +G  G+    F
Sbjct: 773 VIGGIMQHIEQAGI---HSGDSACSIPPYSLSDTIQNEMRRQTIAMAKELGVVGLMNVQF 829

Query: 249 LFDPLSRKVFWLEINV 264
                   V+ LE+N 
Sbjct: 830 AV--KGDDVYVLEVNP 843


>gi|119776328|ref|YP_929068.1| acetyl-CoA carboxylase, biotin carboxylase [Shewanella amazonensis
           SB2B]
 gi|119768828|gb|ABM01399.1| acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha /
           biotin carboxylase [Shewanella amazonensis SB2B]
          Length = 454

 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 35/223 (15%), Positives = 80/223 (35%), Gaps = 24/223 (10%)

Query: 57  VLHGNFG----EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111
            +H  +G      G  +A+ E   + +        A   DK+ + + + + G+P  P   
Sbjct: 82  AIHPGYGFLAERAGFARAVTE-AGLVFLGPDADTIATMGDKVSAIKSIKAVGIPTLPGSD 140

Query: 112 -LVNRFTMDSQHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHG 163
             +N      + L   I  P +IK   GG   G+  +     +   +     ++ +    
Sbjct: 141 GALNDDMNAVEALATDIGYPVLIKASAGGGGRGMRRVDSADELASAIALTRSEALAAFGD 200

Query: 164 DQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPL 221
           + + +E+++     +   ++ D    +               +          PA  I  
Sbjct: 201 NTVYLEKFLTHPRHIEFQMLADGEAALCL------GERDCSAQRRHQKLIEEAPALGIAR 254

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +  +E+  +   A + +G RG+   +FL+       F++E+N 
Sbjct: 255 EKIREMADICEAACRRLGYRGVGTFEFLY--QDGAFFFIEMNT 295


>gi|295100307|emb|CBK97852.1| phosphoribosylamine--glycine ligase [Faecalibacterium prausnitzii
           L2-6]
          Length = 434

 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 42/298 (14%), Positives = 99/298 (33%), Gaps = 52/298 (17%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDA---------------GFKVSQIDVDRSVGLVL- 46
           +++GG   E         A   AL+ +               G+    +++  +    + 
Sbjct: 6   LVVGGGGREH--------AIIKALKKSPDCGEVWCAPGNGGIGYDAHCVNIKATDVETMV 57

Query: 47  ---AHLKPDLAFNVLHGNFGEDGLVQAILELL---EIPYTHSGILASALSMDKMRSKQVV 100
                 K D            D L   +++ L    IP       A+ +   K+ SK ++
Sbjct: 58  GFAETEKFDYVVVAQD-----DPLALGMVDALAAVGIPAFGPDKAAARIEASKVFSKDLM 112

Query: 101 SSCGVPVCPSILVN---RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL---DL 154
              G+P       +   +     +     P VIK        G+++ + ++ +     ++
Sbjct: 113 KKYGIPTAKYETFDDPAKVMEYIKAEGKYPVVIKADGLALGKGVLICENEEQVAEGVKEI 172

Query: 155 LQSSSW-NHGDQLLIEQYVDGIELTC-GVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212
           +    +   G+ +++E+++ G E++         +     ++       ++   ++    
Sbjct: 173 MLDKKFGASGNHVVVEEFLTGPEVSVLSFTDGKVVKPMVSSMDHKRANDHDTGLNTGGMG 232

Query: 213 HVLP-----AKIPLDIYKEVQRLAFLAHQAIGC--RGISRSDFLFDPLSRKVFWLEIN 263
            V P       I  +  +++      A  A GC  +G      +  P   KV  +E N
Sbjct: 233 TVAPNPYYTPAIAAECMEKIFLPTIKAMNAEGCPFKGCLYFGLMLTPDGPKV--IEYN 288


>gi|218459712|ref|ZP_03499803.1| putative urea amidolyase protein [Rhizobium etli Kim 5]
          Length = 377

 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 35/215 (16%), Positives = 81/215 (37%), Gaps = 27/215 (12%)

Query: 95  RSKQVVSSCGVPVCPSI---LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
            ++++  + GVP+ P           + +   I  P ++K   GG  +G+ +    +S+ 
Sbjct: 2   TARELAKASGVPLLPGTGLLSSAEEALSAAEAIGYPVMLKSTAGGGGIGMQLCADPESLR 61

Query: 152 LDLL----QSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
                    + +     ++ IE++V +   +   + GD   +V  +           L+ 
Sbjct: 62  ASFESVQRTARASFGDARVYIERFVAEARHVEVQIFGDGRGNVIALGE-----RDCSLQR 116

Query: 207 SSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            +       PA  +       + + A     ++        +F++DPL  + ++LE+N +
Sbjct: 117 RNQKVVEETPAPGLSAATRGRLHKAAVDLGASVSYESAGTIEFIYDPLREEFYFLEVNTR 176

Query: 266 PGMTPVSI---FPEMAAYAGYSFRELLLWMVEDAS 297
                  +    P   A  G    +L+ WM+  A+
Sbjct: 177 -------LQVEHPVTEAVFGI---DLVEWMIRQAA 201


>gi|89901574|ref|YP_524045.1| carbamoyl-phosphate synthase L chain, ATP-binding [Rhodoferax
           ferrireducens T118]
 gi|89346311|gb|ABD70514.1| Carbamoyl-phosphate synthase L chain, ATP-binding [Rhodoferax
           ferrireducens T118]
          Length = 684

 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 79/220 (35%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            LH  +G   E+      +E   I +      + A   DK+ SK++  + GV   P +  
Sbjct: 77  ALHPGYGFLSENAAFAKKVEEEGIVFIGPKHYSMAAMGDKIESKKLAGAAGVNCIPGVNS 136

Query: 113 ---VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
                   ++    I  P +IK   GG   G+ V   D+           ++ S    D+
Sbjct: 137 AIETAEKAVEIAQGIGYPVMIKASAGGGGKGLRVAYNDKEAFEGYTSCRNEARSSFGDDR 196

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E++V+    +   ++GD+  +V  +   +        K           + I     
Sbjct: 197 VFVEKFVEEPRHIEIQLIGDSFGNVVYLNERECSLQRRHQKVL----EEAPSSFISEATR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K +   A    +A+  +     +F      +  ++LE+N 
Sbjct: 253 KAMGEQAVALAKAVNYQSAGTVEF-VVGKDQSFYFLEMNT 291


>gi|300692764|ref|YP_003753759.1| methylcrotonoyl-CoA carboxylase subunit alpha [Ralstonia
           solanacearum PSI07]
 gi|299079824|emb|CBJ52501.1| Methylcrotonoyl-CoA carboxylase subunit alpha [Ralstonia
           solanacearum PSI07]
          Length = 674

 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 41/221 (18%), Positives = 80/221 (36%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+           + +      A      K  +K ++   GVP+ P    
Sbjct: 77  AIHPGYGFLSENETFARACAEAGLVFVGPPASAIEAMGSKSAAKALMEKAGVPLVPGYHG 136

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
           +             I  P +IK   GG   G+ V++  ++    L     ++SS    D+
Sbjct: 137 DNQDAAFLRAQADRIGYPVLIKASAGGGGKGMRVVEAGETFEAALASVKREASSSFGDDR 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           +LIE+Y+     +   V  D+  +   +           ++          PA  + LD 
Sbjct: 197 VLIEKYLTRPRHIEIQVFADSFGNTVYL-----FERDCSVQRRHQKVLEEAPAPGMTLDR 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +   A  A +A+G  G    +F+ D      +++E+N 
Sbjct: 252 RRAMGEAAVAAARAVGYVGAGTVEFIVDE-DGTFYFMEMNT 291


>gi|239828541|ref|YP_002951165.1| hypothetical protein GWCH70_3255 [Geobacillus sp. WCH70]
 gi|239808834|gb|ACS25899.1| protein of unknown function DUF201 [Geobacillus sp. WCH70]
          Length = 327

 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 42/219 (19%), Positives = 81/219 (36%), Gaps = 26/219 (11%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIK 131
            E L +    S I  + +  DK ++ +     G       ++     D     + PY+IK
Sbjct: 97  FEELGVTVLVSSIETNEICFDKRKTGRFFVENGFDTPKEYVIEEIINDPNA--NYPYLIK 154

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P KG SS+G+  ++  + +          ++  + +++++V G E T  V+ D +  V  
Sbjct: 155 PAKGSSSIGVYKVRNREELL------FFKDYISEPVLQEFVKGEEYTIDVLVDFNGKVV- 207

Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI-GCRGISRSDFLF 250
            AVP+    +   + S   +             + +   A    + + G  G        
Sbjct: 208 TAVPRLRMETRAGEVSKGMTVR----------NELLIHSARRVVEKLPGAVGCITLQCFL 257

Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
                +V ++EIN + G      FP     AG  F   +
Sbjct: 258 TDK-NEVKFIEINPRFG----GGFPLSI-AAGADFPRFI 290


>gi|19112692|ref|NP_595900.1| pyruvate carboxylase [Schizosaccharomyces pombe 972h-]
 gi|51701714|sp|Q9UUE1|PYC_SCHPO RecName: Full=Pyruvate carboxylase; AltName: Full=Pyruvic
           carboxylase; Short=PCB
 gi|5738532|emb|CAB52809.1| pyruvate carboxylase [Schizosaccharomyces pombe]
          Length = 1185

 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 78/222 (35%), Gaps = 19/222 (8%)

Query: 56  NVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
           N++H  +G   E+      +    + +            DK +++ +   CGVPV P   
Sbjct: 110 NLVHPGYGFLSENAEFARKVNEAGMQFVGPSPEVIDSLGDKTKARAIAIRCGVPVVPGTP 169

Query: 113 VNRFTMDSQHLI----SPPYVIKPLKGGSSLGIIVIKKD----QSIPLDLLQSSSWNHGD 164
                 +           P +IK   GG   G+ V++      +S      ++ +     
Sbjct: 170 GPVEHYEEAEAFVKEYGLPVIIKAAMGGGGRGMRVVRSADTLKESFERARSEALASFGDG 229

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLD 222
            + IE+++D    +   +M D + +V              ++        + PA  +   
Sbjct: 230 TVFIERFLDKPKHIEIQLMADKAGNVI-----HLHERDCSVQRRHQKVVEIAPAKDLDPK 284

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           I + +   A    + +       ++FL D   R  +++EIN 
Sbjct: 285 IRQALYDDAIKIAKEVKYCNAGTAEFLLDQKGRH-YFIEINP 325


>gi|323140859|ref|ZP_08075772.1| pyruvate carboxylase [Phascolarctobacterium sp. YIT 12067]
 gi|322414597|gb|EFY05403.1| pyruvate carboxylase [Phascolarctobacterium sp. YIT 12067]
          Length = 1146

 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 36/243 (14%), Positives = 85/243 (34%), Gaps = 24/243 (9%)

Query: 35  QIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSM 91
            +D+   +  V      D     +H  +G   E+  +        + +    +    +  
Sbjct: 63  YLDI-EDILRVAKEHDVD----AIHPGYGFLSENSNLARRCAEEGLIFIGPRLEHLVMFG 117

Query: 92  DKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147
           DK+ +++     G+P+ P     +      +        P +IK + GG   G+ V+   
Sbjct: 118 DKINARKQAELAGIPMIPGSKGTVNSLDEVLAFGEKCGYPIIIKAVNGGGGRGMRVVHSA 177

Query: 148 QSIPLDLLQSSSWNH----GDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSY 202
           +        + S        D++ +E+Y+ +   +   ++GD     T   +        
Sbjct: 178 EEAITAYDMAKSEAKKAFGNDEIYLEKYLQNPKHIEVQIIGD-----THGNLMHLFERDC 232

Query: 203 ELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
            ++        + PA  +P++  K +   A    + +        +FL  P   K +++E
Sbjct: 233 SVQRRHQKLVEIAPAFALPIEQRKAICEAAVKLMKNVDYISAGTVEFLATP-DGKFYFIE 291

Query: 262 INV 264
           +N 
Sbjct: 292 VNP 294


>gi|320450480|ref|YP_004202576.1| carbamoyl-phosphate synthase, large subunit [Thermus scotoductus
           SA-01]
 gi|320150649|gb|ADW22027.1| carbamoyl-phosphate synthase, large subunit [Thermus scotoductus
           SA-01]
          Length = 1035

 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 52/289 (17%), Positives = 100/289 (34%), Gaps = 38/289 (13%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI---------DVD------------RSVGLV 45
           G ++E + S   G     AL  AG++   +         D +              +  V
Sbjct: 21  GQAAEFDYS---GTQAVKALRGAGYEAILVNSNPATIMTDPELAERTYLEPLTLEYLERV 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +A  +PD     L G    +  +    + +L    +    +   A     D+   ++ + 
Sbjct: 78  IAEERPDALLPTLGGQTALNLSMALHEEGVLARYGVELIGAKAEAIKKGEDREEFQKAMR 137

Query: 102 SCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G+ V    +V      +     +  P V++P       G  + + +  +   L +   
Sbjct: 138 KIGLEVPRGQMVGSVEEGLHFAREVGYPVVVRPSFTLGGTGGGIARNEAELREVLGRGLL 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEI-AVPKSDFYSYELKYSSLNSTHVLPA 217
            +     L+E+ V G  E    VM D +  V  I ++   D           +S  V PA
Sbjct: 198 LSPVHTALVEESVLGWKEFELEVMRDHADTVVIITSIENVDPMGVHT----GDSITVAPA 253

Query: 218 K-IPLDIYKEVQRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
           + +    Y+ ++  A    + IG   G S   F  DP + +   +E+N 
Sbjct: 254 QTLSDAEYQRMRDAAKAVIREIGVDTGGSNIQFAVDPKTGRQVVIEMNP 302



 Score = 61.3 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 45/301 (14%), Positives = 105/301 (34%), Gaps = 37/301 (12%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVL-HGNFGEDGLVQAI--- 71
           AL +AG++   +         D D +  L    L  +   N++ H      G++  +   
Sbjct: 583 ALREAGYETIMVNSNPETVSTDYDTADRLYFEPLTLEDVLNLVEHEKP--IGVIATLGGQ 640

Query: 72  --------LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTMDSQ 121
                   LE   +    +   A   + D+    ++    G+P     +       ++  
Sbjct: 641 TPLKLAKGLEEAGVKLLGTPFAAIHKAEDRHEFNRLCRELGIPQPEGRVAATPGEALELA 700

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS-SSWNHGDQLLIEQYVDGI-ELTC 179
             +  P + +P        + V++  + +   L +          +L+++Y++G  EL  
Sbjct: 701 EEVGYPLLARPSYVLGGRAMRVLQSREELKHYLEEVYEPLQDKPSILLDRYLEGALELDV 760

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
             + D    +    +   +       +S  ++T + P  +      +V+        A+G
Sbjct: 761 DALSDGEEVMIAGVMEHVERAGV---HSGDSATVLPPVHLSPGALDKVRAYTRKLALALG 817

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
            +G+   +  +  L  +V+ LE N +   T     P ++   G    +L   ++     L
Sbjct: 818 VKGL--LNVQYAVLGEEVYILEANPRASRT----VPFVSKAIGIPLAKL-AALIAVGKTL 870

Query: 300 R 300
           R
Sbjct: 871 R 871


>gi|116872468|ref|YP_849249.1| pyruvate carboxylase [Listeria welshimeri serovar 6b str. SLCC5334]
 gi|116741346|emb|CAK20468.1| pyruvate carboxylase pycA [Listeria welshimeri serovar 6b str.
           SLCC5334]
          Length = 1146

 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 35/243 (14%), Positives = 82/243 (33%), Gaps = 25/243 (10%)

Query: 35  QIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSM 91
            +D+  ++  +      D     +H  +G   E+       E   I +         +  
Sbjct: 63  YLDI-ENIIEIAKESGAD----AIHPGYGFLSENIEFARRCEQEGIIFVGPKSKHLDMFG 117

Query: 92  DKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK- 146
           DK+++K+      +PV P     +   +   +       P +IK   GG   G+ V++  
Sbjct: 118 DKIKAKEQALLADIPVIPGSNGPVAGIKEVEEFGDKNGYPLMIKASLGGGGRGMRVVESK 177

Query: 147 ---DQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSY 202
               +S      ++ +    D++ +E+ V +   +   ++GD   ++  +          
Sbjct: 178 EHVKESFERASSEAKAAFGNDEVYVEKCVMNPKHIEVQILGDTHGNIVHLFERDCSIQRR 237

Query: 203 ELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
             K        V P   I  ++   +   A    + +        +FL        +++E
Sbjct: 238 HQK-----VVEVAPCNAITSELRNRICDAAVKLMKNVDYINAGTVEFLV--EGDDFYFIE 290

Query: 262 INV 264
           +N 
Sbjct: 291 VNP 293


>gi|21325531|dbj|BAC00153.1| Formate-dependent phosphoribosylglycinamide formyltransferase (GAR
           transformylase) [Corynebacterium glutamicum ATCC 13032]
          Length = 398

 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 45/276 (16%), Positives = 100/276 (36%), Gaps = 36/276 (13%)

Query: 19  GKACASALEDAGFKVSQID----------------VDRSVGLVLAHL----KPDLAFNVL 58
           GK  A A +  G +V  +D                +D +    +  L    +PD     +
Sbjct: 17  GKEVAIAFQRLGLEVHAVDRYEHAPAHQVAHFSYVIDMTDAAQVRELVERVRPDFVIPEI 76

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKM-RSKQVVSSCGVPVCPSILVNRFT 117
                 D LV+  +E   +        A+ L+M++    K      G+P       + F 
Sbjct: 77  E-ALATDELVK--IEEEGLATIVPTARAAKLTMNREGIRKLAAEELGLPTSNYEFCSTFE 133

Query: 118 M--DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD--LLQSSSWNHGDQLLIEQYVD 173
               +   +  P V+KP+   S  G  V++    +        S +     ++++E +V+
Sbjct: 134 EFSAAAEKLGYPNVVKPVMSSSGKGQSVLRSSDDLQAAWDYAMSGARVANSRVIVEAFVE 193

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHV---LPAKIPLDIYKEVQRL 230
             +    ++   S+D T      + ++   + +   +  +V    P ++     +  + +
Sbjct: 194 -FDYEITLLTVRSIDPTTSKP--ATWFCEPIGHRQEDGDYVESWQPMEMTPRALENARSV 250

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
           A     A+G RG+   +         V++ E++ +P
Sbjct: 251 AARITNALGGRGVFGVELFV--SGDDVYFSEVSPRP 284


>gi|91784542|ref|YP_559748.1| carbamoyl phosphate synthase large subunit [Burkholderia xenovorans
           LB400]
 gi|91688496|gb|ABE31696.1| carbamoyl-phosphate synthase large subunit [Burkholderia xenovorans
           LB400]
          Length = 1084

 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 26/203 (12%), Positives = 73/203 (35%), Gaps = 13/203 (6%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQHLISPPYV 129
           LE   +P   +       + D+ R ++++   G+   P+         +     I  P V
Sbjct: 655 LEANGVPIVGTSPDMIDAAEDRERFQKLLQDLGLRQPPNRTARAEDEALKLADEIGYPLV 714

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++ + + +   + ++   ++   +L+++++ D IE     + D    
Sbjct: 715 VRPSYVLGGRAMEIVHEPRDLERYMREAVKVSNDSPVLLDRFLNDAIECDVDCISDGEAV 774

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                +   +       +S  ++  + P  +  +   E++R      +A+   G+    F
Sbjct: 775 FIGGVMEHIEQAGV---HSGDSACSLPPYSLSKETVAELKRQTGAMAKALNVIGLMNVQF 831

Query: 249 LFD-------PLSRKVFWLEINV 264
                          ++ LE+N 
Sbjct: 832 AIQQVPQADGSKEDVIYVLEVNP 854



 Score = 62.8 bits (152), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 49/285 (17%), Positives = 94/285 (32%), Gaps = 42/285 (14%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +              DV          V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYKVILVNSNPATIMTDPNTADVTYIEPITWEVVERIIAKERPDAILP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G    +  +      +LE  ++    +   A   + D+ + K  ++  G+    S  
Sbjct: 89  TMGGQTALNCALDLHAHGVLEKYKVELIGASPEAIDKAEDRQKFKDAMTRIGLGSAKSGT 148

Query: 111 -------ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
                  + V             P VI+P       G  +            +    +  
Sbjct: 149 AHSMEEALAVQADIASQTGSGGYPVVIRPSFTLGGSGGGIAYNRDEFEEICKRGLDLSPT 208

Query: 164 DQLLIEQYVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IP 220
            +LLIE+ + G  E    V+ D   + +   ++   D           +S  V PA+ + 
Sbjct: 209 RELLIEESLLGWKEYEMEVVRDKKDNCIIVCSIENLDPMGIHT----GDSITVAPAQTLT 264

Query: 221 LDIYKEVQRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
              Y+ ++  +    + IG   G S   F  +P   ++  +E+N 
Sbjct: 265 DKEYQVLRNASLAVLREIGVDTGGSNVQFSINPKDGRMIVIEMNP 309


>gi|78065905|ref|YP_368674.1| carbamoyl phosphate synthase large subunit [Burkholderia sp. 383]
 gi|77966650|gb|ABB08030.1| carbamoyl-phosphate synthase large subunit [Burkholderia sp. 383]
          Length = 1084

 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 26/203 (12%), Positives = 73/203 (35%), Gaps = 13/203 (6%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQHLISPPYV 129
           LE   +P   +       + D+ R ++++   G+   P+         +     I  P V
Sbjct: 655 LEAHGVPIVGTSPDMIDAAEDRERFQKLLQDLGLRQPPNRTARAEDEALALAEEIGYPLV 714

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++ + + +   + ++   ++   +L+++++ D IE     + D    
Sbjct: 715 VRPSYVLGGRAMEIVHEPRDLERYMREAVKVSNDSPVLLDRFLNDAIECDVDCICDGEAV 774

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                +   +       +S  ++  + P  +  +   E++R      +A+   G+    F
Sbjct: 775 FIGGVMEHIEQAGV---HSGDSACSLPPYSLSKETVAELKRQTGAMAKALNVVGLMNVQF 831

Query: 249 LFD-------PLSRKVFWLEINV 264
                          ++ LE+N 
Sbjct: 832 AIQQVPQADGSKQDIIYVLEVNP 854



 Score = 65.5 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 48/285 (16%), Positives = 96/285 (33%), Gaps = 42/285 (14%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +              DV          V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYKVVLVNSNPATIMTDPNTADVTYIEPITWEVVARIIEKERPDAILP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      +LE   +    +   A   + D+ + K  ++  G+    S +
Sbjct: 89  TMGGQTALNCALDLHHHGVLEKFGVELIGASPEAIDKAEDRQKFKDAMTKIGLGSAKSGV 148

Query: 113 VNRFTMDSQHLI---------SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
            +     +Q              P VI+P       G  +    +       +    +  
Sbjct: 149 AHSMEEATQVHAEIMALTGGSGYPVVIRPSFTLGGSGGGIAYNREEFEEICKRGLDLSPT 208

Query: 164 DQLLIEQYVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IP 220
            +LLIE+ + G  E    V+ D + + +   ++   D           +S  V PA+ + 
Sbjct: 209 RELLIEESLLGWKEYEMEVVRDRADNCIIVCSIENLDPMGVHT----GDSITVAPAQTLT 264

Query: 221 LDIYKEVQRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
              Y+ ++  +    + IG   G S   F  +P   ++  +E+N 
Sbjct: 265 DKEYQILRNASLAVLREIGVDTGGSNVQFSINPKDGRMVVIEMNP 309


>gi|239504121|ref|ZP_04663431.1| putative Acetyl-/propionyl-coenzyme A carboxylase alpha chain
           [Includes: biotin carboxylase; biotin carboxyl carrier
           [Acinetobacter baumannii AB900]
          Length = 646

 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 34/198 (17%), Positives = 70/198 (35%), Gaps = 14/198 (7%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD----SQHLISPPYVIK 131
           +I +      A  L   K  SK  +   GVP  P    +R  ++        I  P ++K
Sbjct: 100 QITFIGPTASAIELMGSKRLSKIAMIEAGVPCVPGYEGDRQDLEYLTTQAEQIGFPIMVK 159

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSS-----SWNHGDQLLIEQYVDGIELTCGVMGDAS 186
              GG   G+ ++++   +   L  +      ++  G+ +L +  +    +   V GD  
Sbjct: 160 ASSGGGGRGMRLVQQTSELFEALQTARSEAENAFGSGELILEKAVIAPRHVEIQVFGDTH 219

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRS 246
            +   +            K             +  ++ +++   A  A +A    G    
Sbjct: 220 GNYVYLFERDCSIQRRHQK----VVEEAPCPVMTPELRQKMGEAAVAAAKACAYVGAGTV 275

Query: 247 DFLFDPLSRKVFWLEINV 264
           +FL D    + ++LE+N 
Sbjct: 276 EFLLDAS-GEFYFLEMNT 292


>gi|254452621|ref|ZP_05066058.1| methylcrotonyl-CoA carboxylase, alpha subunit [Octadecabacter
           antarcticus 238]
 gi|198267027|gb|EDY91297.1| methylcrotonyl-CoA carboxylase, alpha subunit [Octadecabacter
           antarcticus 238]
          Length = 644

 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 78/225 (34%), Gaps = 23/225 (10%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      +    + +      A      K R+K ++   GVPV P    
Sbjct: 77  AIHPGYGFLSENPDFVDAVTAAGLIFVGPSGDAIRAMGLKDRAKALMIKAGVPVVPGYHG 136

Query: 114 ----NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK----DQSIPLDLLQSSSWNHGDQ 165
               +    D    I  P +IK + GG   G+ + +     D  +     +S +    D 
Sbjct: 137 ADQNDDLLRDEATKIGYPVMIKAVAGGGGKGMRLAETALEFDDQLASARAESRTAFCNDA 196

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDI 223
           +LIE++V     +   + GD +                 L+          PA ++   +
Sbjct: 197 VLIEKFVTAPRHIEVQIFGDGT------QAIHLFERDCSLQRRHQKVIEEAPAPRMSDAV 250

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLS----RKVFWLEINV 264
              +   A  A +AIG  G    +F+ D          +++E+N 
Sbjct: 251 RSAMGAAAVKAAEAIGYSGAGTVEFIVDGSGPLRTDGFWFMEMNT 295


>gi|254448823|ref|ZP_05062279.1| carbamoyl-phosphate synthase, large subunit [gamma proteobacterium
           HTCC5015]
 gi|198261513|gb|EDY85802.1| carbamoyl-phosphate synthase, large subunit [gamma proteobacterium
           HTCC5015]
          Length = 1076

 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 44/278 (15%), Positives = 97/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D +            R++  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWRNIEQIIAEERPDALLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      +LE   +    +   A   + D+ + +  +   G+    + +
Sbjct: 89  TMGGQTALNTALDLDKHGVLEKYGVEMIGASKEAIDTAEDRDKFRIAMDEIGLDSTRAFM 148

Query: 113 VNRFTMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                   + L  I  P +I+P       G  +    Q     +      +   ++ +E+
Sbjct: 149 AKTMEDAEKALAEIGFPIIIRPSFTMGGSGGGIAYNKQEFAEIVRNGLELSPVTEIQLEE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + +   I   ++ D           +S  V PA+ +    Y+ +
Sbjct: 209 SILGWKEYEMEVVRDRADNCIIICSIENLDPMGVHT----GDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P   ++  +E+N 
Sbjct: 265 RDASLAVLRRIGVETGGSNVQFAVNPEDGRLIIIEMNP 302



 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 30/196 (15%), Positives = 79/196 (40%), Gaps = 7/196 (3%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           LE   +P   +   +  L+ D+ R + +++  G+   P+         +D    I  P V
Sbjct: 655 LEAAGVPIIGTTPDSIDLAEDRERFQAMLNKLGLKQPPNRTARNPDEAVDLADEIGYPLV 714

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++   + +   + ++ S ++   +L+++++ D IE+    + DA  +
Sbjct: 715 VRPSYVLGGRAMEIVSDREDLNRYMTEAVSVSNDSPVLLDRFLNDAIEVDVDAICDAEGN 774

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           V    V   +       +S  ++  + P  +      E+++      + +   G+  + F
Sbjct: 775 VLIGGV--MEHIEEAGVHSGDSACSLPPYTLDQKTQDELRQQVADMARELNVVGLMNTQF 832

Query: 249 LFDPLSRKVFWLEINV 264
                   ++ LE+N 
Sbjct: 833 AI--QGDNIYVLEVNP 846


>gi|94548449|gb|ABF38495.1| Biotin carboxylase [Streptococcus pyogenes MGAS10750]
          Length = 470

 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 79/220 (35%), Gaps = 16/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  FG   E+     + E + I +            DK+ ++  +   GVPV P    
Sbjct: 93  AIHPGFGFLSENSKFATMCEEMNIKFIGPSASVMDKMGDKINARSEIIKAGVPVIPGSDG 152

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG----DQ 165
            +   +  +   + I  P ++K   GG   GI  ++ +  +      +S    G      
Sbjct: 153 EVYNAQEALAIANKIGYPVMLKASAGGGGKGIRKVETEADLEAAFNAASQEALGAFGNGA 212

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+ +     +   ++GDA  ++  +            K             I   + 
Sbjct: 213 MYLEKVIYPARHIEVQILGDAYGNIIHLGERDCSLQRNNQKVL----EESPSIAIGNTLR 268

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            E+ + A  A +A+        +FL D  S K +++E+N 
Sbjct: 269 HEMGQAAVRAAEAVAYENAGTIEFLLDEDSEKFYFMEMNT 308


>gi|33240347|ref|NP_875289.1| carbamoyl phosphate synthase large subunit [Prochlorococcus marinus
           subsp. marinus str. CCMP1375]
 gi|33237874|gb|AAP99941.1| Carbamoylphosphate synthase large subunit [Prochlorococcus marinus
           subsp. marinus str. CCMP1375]
          Length = 1108

 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 54/279 (19%), Positives = 98/279 (35%), Gaps = 36/279 (12%)

Query: 18  SGKACASALEDAGFKVSQID---------------------VDRSVGLVLAHLKPDLAFN 56
           SG     AL+  GF+V  I+                         +  ++   KPD    
Sbjct: 29  SGTQACKALKKEGFEVVLINSNPASIMTDPEMADRTYIEPLTTEVITKIIELEKPDALLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  V    + IL   +I    + + +   + D+   K  +   GV VCPS +
Sbjct: 89  TMGGQTALNAAVDLAEKGILRKFKIELIGADLESINKAEDRQLFKNSMEKIGVNVCPSGI 148

Query: 113 VNRFTMDSQ---HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
                       ++ S P +I+P       G  +    +            +   Q+LIE
Sbjct: 149 ACNIEEAINVGSNIESFPRIIRPAFTLGGSGGGIAYNQEEFISICKSGLEASPASQILIE 208

Query: 170 QYVDG-IELTCGVMGDASLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPAK-IPLDIYKE 226
           + + G  E    VM D   +V  I   ++ D           +S  + PA+ +    Y+ 
Sbjct: 209 KSLLGWKEFELEVMRDNVDNVVIICSIENIDPMGIHT----GDSITIAPAQTLTDREYQR 264

Query: 227 VQRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           ++  +    + IG   G S   F  +P+  +V  +E+N 
Sbjct: 265 LRDQSIKIIREIGVETGGSNVQFAVNPVDGEVVVIEMNP 303



 Score = 41.6 bits (97), Expect = 0.14,   Method: Composition-based stats.
 Identities = 33/229 (14%), Positives = 82/229 (35%), Gaps = 16/229 (6%)

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---ISPPYV 129
           ++       +   +   + D+ + + ++    V   PS  + R   +++ +   IS P V
Sbjct: 679 KMSGSKIFGTSPKSIDQAEDREQFEHILRELRVRQ-PSNGIARSISEAEKIANRISYPLV 737

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLD 188
           ++P        + ++   Q +   + ++        +LI++Y++  IE+    + D    
Sbjct: 738 VRPSYVLGGRAMEIVYDSQELKTYMNKAVKVEPDHPVLIDEYLENAIEVDVDALSD---S 794

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
              + +     +       S +S   LP   +     K ++       +++   G+    
Sbjct: 795 FGNVVIAGLMEHIEPAGIHSGDSACCLPSISLSDSSIKTIKEWTNSLAKSLNVIGLINLQ 854

Query: 248 FLFDPLSR---KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           F          KVF +E N +   T     P ++   G+    L   ++
Sbjct: 855 FAVQRDDNGEEKVFIIEANPRASRT----IPFVSKAIGWPLARLATSLL 899


>gi|152981679|ref|YP_001355246.1| cyanophycin synthetase [Janthinobacterium sp. Marseille]
 gi|151281756|gb|ABR90166.1| cyanophycin synthetase [Janthinobacterium sp. Marseille]
          Length = 853

 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 25/112 (22%), Positives = 51/112 (45%), Gaps = 5/112 (4%)

Query: 88  ALSMDKMRSKQVVSSCGVPVCP--SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIV-I 144
           +++ DK  +K ++++ GVPV    S+        +   I  P VIKP  G    G+ V +
Sbjct: 198 SIAQDKEMTKVLLAAAGVPVPDGASVTTAEEAWQAARDIGAPVVIKPRDGNQGKGVAVNM 257

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK 196
           K ++ +        ++     +++E+Y+ G +    V+G   +     A P+
Sbjct: 258 KTEEEVKTAFAV--AYEICSDVVVERYLPGHDYRLLVVGKQLIAAARRAPPE 307


>gi|330982516|gb|EGH80619.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. aptata
          str. DSM 50252]
          Length = 97

 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 1/57 (1%)

Query: 1  MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNV 57
          +A++ GG SSE EVSL S +   +A++   + ++ I VD+ +G  L   + D   N 
Sbjct: 5  VAIVFGGQSSEHEVSLQSARNVINAIDRERYALTLIGVDK-LGRWLHFDEADYLLNA 60


>gi|330937587|gb|EGH41525.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. pisi str.
          1704B]
          Length = 97

 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 1/57 (1%)

Query: 1  MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNV 57
          +A++ GG SSE EVSL S +   +A++   + ++ I VD+ +G  L   + D   N 
Sbjct: 5  VAIVFGGQSSEHEVSLQSARNVINAIDRERYALTLIGVDK-LGRWLHFDEADYLLNA 60


>gi|330921677|ref|XP_003299521.1| hypothetical protein PTT_10529 [Pyrenophora teres f. teres 0-1]
 gi|311326746|gb|EFQ92360.1| hypothetical protein PTT_10529 [Pyrenophora teres f. teres 0-1]
          Length = 1172

 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 53/291 (18%), Positives = 102/291 (35%), Gaps = 41/291 (14%)

Query: 6   GGIS----SEREVSLSSGKACASALEDAGF--------------------KVSQIDVDRS 41
           GG+S     E + S   G     AL++AG                     ++  + V   
Sbjct: 100 GGLSIGQAGEFDYS---GSQALKALKEAGVKSVLLNPNIATIQTSHVLADEIYYLPVTPE 156

Query: 42  VGL-VLAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRS 96
               V+   +PD  F    G    +  VQ     I E   +    + +     S D+   
Sbjct: 157 YAEYVIQKERPDGIFLSFGGQTALNLGVQMDAKGIFEKYNVKVLGTSVQTLKTSEDRDLF 216

Query: 97  KQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154
            + +    +P+  SI V+     +D+   +  P +++       LG       + +    
Sbjct: 217 ARALDEINIPIAKSIAVSTVDEALDAAEKVGYPIIVRAAYALGGLGSGFANNPEELK--N 274

Query: 155 LQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTH 213
           L + S     Q+L+E+ + G  E    V+ DAS +   I V   + +   L   + +S  
Sbjct: 275 LSARSLTLSPQILVEKSLKGWKEAEYEVVRDASDN--CITVCNMENFD-PLGVHTGDSIV 331

Query: 214 VLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
           V P++    + Y  ++  +    + +G  G     +   P       +E+N
Sbjct: 332 VSPSQTFSDEEYHMLRSASIKIVRHLGVVGECNVQYCLQPDGLDYRVIEVN 382



 Score = 52.0 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/168 (13%), Positives = 63/168 (37%), Gaps = 12/168 (7%)

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--QHLISPPYVIKPLKGGSS 138
            +       + D+ +   ++ S GV       +  +       + +  P +++P    S 
Sbjct: 739 GTDPRDIDKAEDRHKFSSILDSIGVDQPAWKELTSYEEAKKFANSVGYPVLVRPSYVLSG 798

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL----TCGVMGDASLDVTEIAV 194
             + VI+ ++ +   LL +S+ +    ++I +++DG +          G+  +      +
Sbjct: 799 AAMTVIRGEEELKEKLLAASNVSPDHPVVITKFMDGAQEIDCDAVASNGNVLVHAVSEHI 858

Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
             +  +S +       +  + P  +   I + V+ +A    +A    G
Sbjct: 859 ENAGVHSGDA------TLVLPPVNLDKRIQERVKEIADKVAKAWNITG 900


>gi|209696240|ref|YP_002264170.1| biotin carboxylase (acetyl-CoA carboxylase subunit A) [Aliivibrio
           salmonicida LFI1238]
 gi|208010193|emb|CAQ80520.1| biotin carboxylase (acetyl-CoA carboxylase subunit A) [Aliivibrio
           salmonicida LFI1238]
          Length = 447

 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 33/222 (14%), Positives = 78/222 (35%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         +  DK+ +   +   GVP  P    
Sbjct: 77  AVHPGYGFLAENADFAEQVERSGFIFVGPKAETIRMMGDKVSAISSMKKAGVPCVPGSDG 136

Query: 112 LVNRFTMD---SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
            ++            I  P +IK   GG   G+ V++ ++ +   +     ++++     
Sbjct: 137 PLDNDEAKNKSFAKRIGYPIIIKASSGGGGRGMRVVRAEKDLIEAIAMTRAEATACFGDG 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E++++    +   ++ D   +   +            K          PA  I  +
Sbjct: 197 TVYMEKFLENPRHIEVQIIADGQGNAIHLGERDCSMQRRHQK-----VVEEAPAPGITEE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + K +      A   I  RG    +FL+   + + +++E+N 
Sbjct: 252 MRKYIGERCTRACVDIAYRGAGTFEFLY--ENGEFYFIEMNT 291


>gi|162139178|ref|YP_603039.2| acetyl-CoA carboxylase biotin carboxylase subunit [Streptococcus
           pyogenes MGAS10750]
          Length = 454

 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 79/220 (35%), Gaps = 16/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  FG   E+     + E + I +            DK+ ++  +   GVPV P    
Sbjct: 77  AIHPGFGFLSENSKFATMCEEMNIKFIGPSASVMDKMGDKINARSEIIKAGVPVIPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG----DQ 165
            +   +  +   + I  P ++K   GG   GI  ++ +  +      +S    G      
Sbjct: 137 EVYNAQEALAIANKIGYPVMLKASAGGGGKGIRKVETEADLEAAFNAASQEALGAFGNGA 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+ +     +   ++GDA  ++  +            K             I   + 
Sbjct: 197 MYLEKVIYPARHIEVQILGDAYGNIIHLGERDCSLQRNNQKVL----EESPSIAIGNTLR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            E+ + A  A +A+        +FL D  S K +++E+N 
Sbjct: 253 HEMGQAAVRAAEAVAYENAGTIEFLLDEDSEKFYFMEMNT 292


>gi|126208578|ref|YP_001053803.1| phosphoribosylglycinamide formyltransferase 2 [Actinobacillus
           pleuropneumoniae L20]
 gi|190150432|ref|YP_001968957.1| phosphoribosylglycinamide formyltransferase 2 [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|303253319|ref|ZP_07339468.1| phosphoribosylglycinamide formyltransferase 2 [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|307246022|ref|ZP_07528104.1| Phosphoribosylglycinamide formyltransferase 2 [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|307248129|ref|ZP_07530157.1| Phosphoribosylglycinamide formyltransferase 2 [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|307250360|ref|ZP_07532309.1| Phosphoribosylglycinamide formyltransferase 2 [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|307263777|ref|ZP_07545383.1| Phosphoribosylglycinamide formyltransferase 2 [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
 gi|171855093|sp|A3N1B2|PURT_ACTP2 RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|254788764|sp|B3GXZ2|PURT_ACTP7 RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|126097370|gb|ABN74198.1| putative phosphoribosylglycinamide formyltransferase 2
           [Actinobacillus pleuropneumoniae serovar 5b str. L20]
 gi|189915563|gb|ACE61815.1| putative phosphoribosylglycinamide formyltransferase 2
           [Actinobacillus pleuropneumoniae serovar 7 str. AP76]
 gi|302648001|gb|EFL78208.1| phosphoribosylglycinamide formyltransferase 2 [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|306852957|gb|EFM85180.1| Phosphoribosylglycinamide formyltransferase 2 [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|306855306|gb|EFM87481.1| Phosphoribosylglycinamide formyltransferase 2 [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|306857635|gb|EFM89742.1| Phosphoribosylglycinamide formyltransferase 2 [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|306870898|gb|EFN02636.1| Phosphoribosylglycinamide formyltransferase 2 [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
          Length = 393

 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 55/310 (17%), Positives = 102/310 (32%), Gaps = 58/310 (18%)

Query: 19  GKACASALEDAGFKVSQID--------------------VDRSVGLVLAHLKPDLAFNVL 58
           GK     L+  G +V  +D                       ++  ++   KPD     +
Sbjct: 24  GKEVVIELQRLGVEVIAVDRYENAPAQQVAHRAYTISMLDGAALRALVEKEKPDFIVPEV 83

Query: 59  HGNFGEDGLVQAILELLEIPY-THSGILASALSMDKM-RSKQVVSSCGVPVCPSILVNRF 116
                E      ++EL +  Y       A+ L+M++    +      G+   P   V+  
Sbjct: 84  -----EAIATATLVELEQEGYNVVPTAKATQLTMNREGIRRLAAEELGLKTSPYRFVDNL 138

Query: 117 TMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLD--LLQSSSWNHGDQLLIEQYV 172
               Q +  I  P V+KP+   S  G  VIK +  I       Q      G ++++E ++
Sbjct: 139 EDFKQAVAEIGIPCVVKPIMSSSGHGQSVIKSEDQIQQAWDYSQEGGRAGGGRVIVEGFI 198

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYEL----KYSSLNSTHVL-PAKIPLDIYKEV 227
                          ++T++ V   +  S+      +    +      P  +     K  
Sbjct: 199 K-----------FDYEITQLTVRHVNGTSFLAPIGHRQEDGDYRESWQPQAMSDLALKRA 247

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP---GMT-----PVSIFPEMAA 279
           Q  A     A+G RGI   +        ++ + E++ +P   GM       +S F   A 
Sbjct: 248 QETAERITTALGGRGIFGVELFV--CGDEIIFNEVSPRPHDTGMVTMASQELSQFALHAR 305

Query: 280 YA-GYSFREL 288
              G    E+
Sbjct: 306 AILGLPIPEI 315


>gi|319426125|gb|ADV54199.1| methylcrotonyl-CoA carboxylase, biotin-containing subunit, LiuD
           [Shewanella putrefaciens 200]
          Length = 689

 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 81/221 (36%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       E   I +   G  A      K  +K ++++  VP+ P    
Sbjct: 87  AIHPGYGFLSENADFARKCEAAGIVFVGPGSEAIEAMGSKSAAKTIMTAAQVPLVPGYHG 146

Query: 114 NRFTM----DSQHLISPPYVIKPLKGGSSLGIIVIKKD----QSIPLDLLQSSSWNHGDQ 165
           +  T          I  P +IK   GG   G+ +++ +     +I     +++S    D+
Sbjct: 147 DDQTDATLKAEALKIGFPMLIKAAYGGGGKGMRIVEHEGEIMDAINSARREAASSFGNDK 206

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           LL+E+Y+     +   V  D   +   ++           K          PA  +   +
Sbjct: 207 LLLERYLRQPRHVEVQVFADTFGNAIYLSDRDCSIQRRHQK-----VVEEAPAPGLSDAL 261

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             ++   A  A +AI   G    +FL D      +++E+N 
Sbjct: 262 RAQMGEAAVAAAKAIDYVGAGTVEFLLDT-DNSFYFMEMNT 301


>gi|328788708|ref|XP_003251170.1| PREDICTED: pyruvate carboxylase, mitochondrial-like [Apis
           mellifera]
          Length = 1213

 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 29/199 (14%), Positives = 72/199 (36%), Gaps = 16/199 (8%)

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVI 130
             I +            DK+ ++Q     GVP+ P     +  +   M+       P + 
Sbjct: 150 AGIRFIGPSPKVVQQMGDKVAARQAAIDAGVPIVPGTDGPVTTSDEAMEFCMKHGLPVIF 209

Query: 131 KPLKGGSSLGIIVIKKDQSIPL----DLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDA 185
           K   GG   G+ V++  + +         ++ +      + IE++++    +   ++GD 
Sbjct: 210 KAAYGGGGRGMRVVRHMEEVREMFDRASSEAKAAFGNGAMFIEKFIERPRHIEVQLLGDQ 269

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGIS 244
           + +V  +           ++        + PA ++   +  ++   A    + +G     
Sbjct: 270 AGNVVHLYE-----RDCSVQRRHQKVVEIAPAPRLDPKVRNKMTEHAVRLAKHVGYSNAG 324

Query: 245 RSDFLFDPLSRKVFWLEIN 263
             +FL D      +++E+N
Sbjct: 325 TVEFLADESGN-FYFIEVN 342


>gi|328766745|gb|EGF76798.1| hypothetical protein BATDEDRAFT_92361 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 740

 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 76/221 (34%), Gaps = 18/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      +    + +      A      K  SK ++    VPV P    
Sbjct: 131 AIHPGYGFLSENAGFADAVASSGLSFIGPPAQAIIDMGSKSASKYIMQDAKVPVVPGYHG 190

Query: 114 NRFT----MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
                         +  P +IK +KGG   G+ +++        L  S          D+
Sbjct: 191 ENQDPAYLKSEADKMGYPVLIKAVKGGGGKGMRIVQSADEFYEMLESSKREGLKSFSDDK 250

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           +L+E+Y+     +   V  D   +   +           ++          PA  +  ++
Sbjct: 251 VLVEKYITRPRHVEVQVFADKYGNAVYL-----FERDCSVQRRHQKILEEAPAPGLSSEL 305

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +   A  A +A+   G    +F+ D  + + +++E+N 
Sbjct: 306 RESLGTKAVAAAKAVNYVGAGTVEFILDTDTNEFYFMEMNT 346


>gi|325579245|ref|ZP_08149201.1| acetyl-CoA carboxylase, biotin carboxylase [Haemophilus
           parainfluenzae ATCC 33392]
 gi|325159480|gb|EGC71614.1| acetyl-CoA carboxylase, biotin carboxylase [Haemophilus
           parainfluenzae ATCC 33392]
          Length = 448

 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 40/225 (17%), Positives = 85/225 (37%), Gaps = 27/225 (12%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+      +E     +         L  DK+ + + +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAEQVERSGFIFIGPTADVIRLMGDKVSAIKAMKKAGVPCVPGSDG 136

Query: 111 -----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWN 161
                I  N+   +    I  P +IK   GG   G+ V++ + ++   +     ++ +  
Sbjct: 137 PVGSDIAKNK---EIAKRIGYPIIIKASGGGGGRGMRVVRSEDALEESIAMTKAEAKAAF 193

Query: 162 HGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-I 219
           + D + +E+Y++    +   V+ D   +   +A           K          PA  I
Sbjct: 194 NNDMVYMEKYLENPRHIEIQVLADTHGNAIYLAERDCSMQRRHQK-----VVEEAPAPGI 248

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             ++ +++      A   IG RG    +FL+   + + +++E+N 
Sbjct: 249 TEEVRRDIGSRCAKACVEIGYRGAGTFEFLY--ENGEFYFIEMNT 291


>gi|315501877|ref|YP_004080764.1| carbamoyl-phosphate synthase l chain ATP-binding protein
           [Micromonospora sp. L5]
 gi|315408496|gb|ADU06613.1| Carbamoyl-phosphate synthase L chain ATP-binding protein
           [Micromonospora sp. L5]
          Length = 583

 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 72/221 (32%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLV-QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            +H  +G   E+    QA+++   + +      A     DK+ ++ +    G P+ P   
Sbjct: 76  AVHPGYGFLSENADFAQAVID-AGLTWIGPTPQAIRDLGDKVTARHIAQRAGAPLVPGTP 134

Query: 113 VNRFTMDSQHLI----SPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSWNHGD 164
                 D           P  IK   GG   G+ V +  + IP        ++ +     
Sbjct: 135 DPVGNADEVMAFAVDHGLPVAIKAAFGGGGRGLKVARTMEEIPHLFESATREAVAAFGRG 194

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           +  +E+Y+D    +   V+ D   +V  +            K             +    
Sbjct: 195 ECFVERYLDKPRHVEAQVLADQHGNVIVVGTRDCSLQRRHQK----LVEEAPAPFLTDAQ 250

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             ++   A    +  G  G    ++L   +   + +LE+N 
Sbjct: 251 RAQIHDSAKAICREAGYHGAGTVEYLV-GVDGTISFLEVNT 290


>gi|239907446|ref|YP_002954187.1| putative pyruvate carboxylase [Desulfovibrio magneticus RS-1]
 gi|239797312|dbj|BAH76301.1| putative pyruvate carboxylase [Desulfovibrio magneticus RS-1]
          Length = 1223

 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 37/223 (16%), Positives = 81/223 (36%), Gaps = 22/223 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---- 109
            +H  +G   ED           I +  S   A     +K+  +++  S G+PV P    
Sbjct: 81  AIHPGWGFASEDCEFPRKCAEAGIIFIGSSADAMKSLGNKVEVRRLAMSLGIPVVPGSEG 140

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
           S+ +     +    I  P ++K   GG   GI  I  +  +     ++S+          
Sbjct: 141 SVTIPE-AREIAKKIGFPIMLKAEGGGGGRGIYEIYSEAQLESAFSKASAMAQASFGNPH 199

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK---IPL 221
           L +E+ +     +   V GD   +V        D     ++ +      + P+    +  
Sbjct: 200 LFVEKLLTSVRHIEIQVAGDRFGNVFAF-----DERDCSVQRNHQKLVEITPSPWRGMTD 254

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           ++ + ++       +  G   ++  +FL D  + + + +E+N 
Sbjct: 255 ELRQRLKDYGERLVRETGYYSLATVEFLVDA-NGEPYLIEVNT 296


>gi|197283936|ref|YP_002149808.1| carbamoyl phosphate synthase large subunit [Proteus mirabilis
           HI4320]
 gi|194681423|emb|CAR40261.1| carbamoyl-phosphate synthase large chain [Proteus mirabilis HI4320]
          Length = 1075

 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 98/278 (35%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D +            + V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVVLVNSNPATIMTDPEMADATYIEPIHWQVVRKIIEKERPDAILP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +    Q +L    +    +   A   + D+ R  + +   G+    S +
Sbjct: 89  TMGGQTALNCALELERQGVLAEFGVTMIGATADAIDKAEDRQRFDKAMKKIGLDTARSGI 148

Query: 113 VNRFTMDS--QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +           +  P +I+P       G  +    +       +    +  ++LLI++
Sbjct: 149 AHTMDEAFAVAEQVGFPCIIRPSFTMGGTGGGIAYNREEFEEICTRGLDLSPTNELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + +   +   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIEN----FDAMGIHTGDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  DP + ++  +E+N 
Sbjct: 265 RNASMAVLREIGVETGGSNVQFAVDPKTGRLIVIEMNP 302



 Score = 62.1 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 34/197 (17%), Positives = 75/197 (38%), Gaps = 10/197 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           LE   +P   +   A   + D+ R ++ V   G+    +  V      +D    I  P V
Sbjct: 654 LEAEGVPVIGTSPDAIDKAEDRERFQKAVDKLGLKQPENATVTTLEEAVDKAKSIGYPLV 713

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  +  +      + S ++   +L+++++ D IE+    + D    
Sbjct: 714 VRPSYVLGGRAMEIVYDEIDLRRYFQTAVSVSNDAPVLLDRFLDDAIEVDVDAICDGQQV 773

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           V    +   +    +    S +S   LPA  +  DI   +++        +G +G+    
Sbjct: 774 VIGGIMEHIE----QAGVHSGDSACSLPAYTLSQDIQDIMRKQVRELAFELGVKGLMNVQ 829

Query: 248 FLFDPLSRKVFWLEINV 264
           F        V+ +E+N 
Sbjct: 830 FAV--KGNDVYLIEVNP 844


>gi|154496701|ref|ZP_02035397.1| hypothetical protein BACCAP_00993 [Bacteroides capillosus ATCC
           29799]
 gi|150273953|gb|EDN01053.1| hypothetical protein BACCAP_00993 [Bacteroides capillosus ATCC
           29799]
          Length = 1098

 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 34/209 (16%), Positives = 79/209 (37%), Gaps = 21/209 (10%)

Query: 69  QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTMDSQHLISP 126
           QA+ ++  +P   +       + D+ R  +++  CG+P      V      + +   +  
Sbjct: 677 QALTDM-GVPILGTPADGVDAAEDRERFDEILEQCGIPRAKGRTVFTTEEALTAAKELGY 735

Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC-GVMGDA 185
           P +++P       G+ +   D++I   +   +       +L+++Y+ G EL   GV    
Sbjct: 736 PVLVRPSYVLGGQGMEIAYSDKNIIDFMKIINMTVQEHPILVDKYLMGRELEVDGVFDGE 795

Query: 186 S--LDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRG 242
              L      V +S  +S        +S  V P   +       + R      + +G  G
Sbjct: 796 DILLPGIMEHVERSGVHS-------GDSIAVYPPLHLEDKHKDMILRYTRDMAKHLGVIG 848

Query: 243 ISRSDFLFDPLSRKVFWLEIN-----VQP 266
           +  + ++    + +++ +E+N       P
Sbjct: 849 LINAQYIL--YNDEIYVIEVNPRSSRTIP 875



 Score = 62.4 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 50/287 (17%), Positives = 107/287 (37%), Gaps = 35/287 (12%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI-----------DVDR----------SVGLV 45
           G ++E + +   G     AL++ G +V  +           D+            SV  V
Sbjct: 21  GQAAEFDYA---GTQACRALKEEGVEVVLVNSNPATIMTDKDIADHVYIEPLNIASVEQV 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   +PD     L G  G +  +    Q IL+   +    +   +   + D+   K  + 
Sbjct: 78  IEKERPDSILPTLGGQTGLNLAMNLHEQGILQKYGVRLLGTSPESIRKAEDRQGFKDAME 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
           + G P   S +V      +     I  P +++P       G  +   + S+     +   
Sbjct: 138 AIGQPCVTSDVVESVEDAVAFAGSIGYPVIVRPAYTLGGTGGGIAYDEPSLREIADRGIH 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   Q+LIE+ + G  E+   VM D++ +V +I   ++      +   + +S  V P +
Sbjct: 198 LSRVGQVLIERCISGWKEIEFEVMRDSAGNVIQICSMEN---IDPVGVHTGDSIVVAPTQ 254

Query: 219 -IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +    ++ +++ +     A+   G        +P S +   +E+N 
Sbjct: 255 TLANKEFQMLRKASLDIISALEIEGGCNVQLALNPDSFEYAVIEVNP 301


>gi|333000151|gb|EGK19734.1| acetyl-CoA carboxylase, biotin carboxylase [Shigella flexneri
           K-218]
          Length = 449

 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 81/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         L  DK+ +   +   GVP  P    
Sbjct: 77  AIHPGYGFLSENANFAEQVERSGFIFIGPKAETIRLMGDKVSAIAAMKKAGVPCVPGSDG 136

Query: 112 -LVNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
            L +    +      I  P +IK   GG   G+ V++ D  +   +     ++ +    D
Sbjct: 137 PLGDDMDKNRAIAKRIGYPVIIKASGGGGGRGMRVVRGDAELAQSISMTRAEAKAAFSND 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+Y++    +   V+ D   +   +A           K          PA  I  +
Sbjct: 197 MVYMEKYLENPRHVEIQVLADGQGNAIYLAERDCSMQRRHQK-----VVEEAPAPGITPE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + + + +    A   IG RG    +FLF   + + +++E+N 
Sbjct: 252 LRRYIGKRCAKACVDIGYRGAGTFEFLF--ENGEFYFIEMNT 291


>gi|323144849|ref|ZP_08079418.1| phosphoribosylglycinamide formyltransferase 2 [Succinatimonas
           hippei YIT 12066]
 gi|322415374|gb|EFY06139.1| phosphoribosylglycinamide formyltransferase 2 [Succinatimonas
           hippei YIT 12066]
          Length = 399

 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 49/298 (16%), Positives = 100/298 (33%), Gaps = 53/298 (17%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQID--------------------VDRS 41
           A+L+G  S E    L  GK  A  L   G KV   D                        
Sbjct: 18  ALLLG--SGE----L--GKEVAIELIRLGIKVIACDRYDNAPAMQVAQDKAVINMKDHDE 69

Query: 42  VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +  ++  +KPD     +         +  + E   +        A+ ++M++   + + +
Sbjct: 70  LSALIHKVKPDFVIPEIEAIS--TSTLMELEEKEGLHVVPC-AHAAHITMNREAIRTLAA 126

Query: 102 S-CGVPVCPSILVNRFTMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS 158
              G+P       +       ++  I  P ++KP    S  G   +K  + +      + 
Sbjct: 127 EKLGLPTSKYFFASSLAEIKANIDKIGFPCIMKPTMSSSGKGQSTVKAPEDVEKAWDYAL 186

Query: 159 SWNHGD--QLLIEQYVDGIELTCGVMGDASLDVTEIAVP---KSDFYSYELKYSSLNSTH 213
               G   ++++E  V   +    ++   ++D      P   + +   Y   +       
Sbjct: 187 KAGRGGEQRVIVESMVK-FDREITLLTVHAVDGIHFCQPIGHRQENGDYRESW------- 238

Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP---GM 268
             P  +   +  E +R+A    +A+G  GI   +        KV + E++ +P   GM
Sbjct: 239 -QPEPLTDTVLDECKRIASTVVKALGGYGIFGVELFI--CGDKVIFSELSPRPHDTGM 293


>gi|256821480|ref|YP_003145443.1| acetyl-CoA carboxylase, biotin carboxylase [Kangiella koreensis DSM
           16069]
 gi|256795019|gb|ACV25675.1| acetyl-CoA carboxylase, biotin carboxylase [Kangiella koreensis DSM
           16069]
          Length = 449

 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 37/217 (17%), Positives = 79/217 (36%), Gaps = 18/217 (8%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-----LV 113
           +G   E+      +E     +         L  DK+ +   +   GVP  P         
Sbjct: 82  YGFLAENADFAEQVEQSGFTFIGPKADTIRLMGDKVSAIASMKKAGVPCVPGSDGPLGNN 141

Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGDQLLIE 169
            +  +     I  P +IK   GG   G+ V++++  +   +     ++ S  + D + +E
Sbjct: 142 EKENIAMAKRIGYPVIIKAAGGGGGRGMRVVRQESELIKAIELTKAEAGSAFNNDMVYME 201

Query: 170 QYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
           ++++    +   V+ D+  +   +            K          PA  I   + + +
Sbjct: 202 KFLENPRHIEIQVLADSHGNAIYLGERDCSMQRRHQK-----VVEEAPAPGISEQMRRHI 256

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
                 A + IG RG    +FL++    + F++E+N 
Sbjct: 257 GERCVQACKEIGYRGAGTFEFLYEK--GEFFFIEMNT 291


>gi|187924843|ref|YP_001896485.1| carbamoyl phosphate synthase large subunit [Burkholderia
           phytofirmans PsJN]
 gi|187716037|gb|ACD17261.1| carbamoyl-phosphate synthase, large subunit [Burkholderia
           phytofirmans PsJN]
          Length = 1084

 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 26/203 (12%), Positives = 73/203 (35%), Gaps = 13/203 (6%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQHLISPPYV 129
           LE   +P   +       + D+ R ++++   G+   P+         +     I  P V
Sbjct: 655 LEANGVPIVGTSPDMIDAAEDRERFQKLLQDLGLRQPPNRTARAEDEALKLADEIGYPLV 714

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++ + + +   + ++   ++   +L+++++ D IE     + D    
Sbjct: 715 VRPSYVLGGRAMEIVHEPRDLERYMREAVKVSNDSPVLLDRFLNDAIECDVDCISDGEAV 774

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                +   +       +S  ++  + P  +  +   E++R      +A+   G+    F
Sbjct: 775 FIGGVMEHIEQAGV---HSGDSACSLPPYSLSKETVAELKRQTGAMAKALNVIGLMNVQF 831

Query: 249 LFD-------PLSRKVFWLEINV 264
                          ++ LE+N 
Sbjct: 832 AIQQVPQADGSKEDVIYVLEVNP 854



 Score = 62.4 bits (151), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 49/285 (17%), Positives = 94/285 (32%), Gaps = 42/285 (14%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +              DV          V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYKVILVNSNPATIMTDPNTADVTYIEPITWEVVERIIAKERPDAILP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G    +  +      +LE  ++    +   A   + D+ + K  ++  G+    S  
Sbjct: 89  TMGGQTALNCALDLHAHGVLEKYKVELIGASPEAIDKAEDRQKFKDAMTKIGLGSAKSGT 148

Query: 111 -------ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
                  + V             P VI+P       G  +            +    +  
Sbjct: 149 AHSMEEALAVQADIASQTGSGGYPVVIRPSFTLGGSGGGIAYNRDEFEEICKRGLDLSPT 208

Query: 164 DQLLIEQYVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IP 220
            +LLIE+ + G  E    V+ D   + +   ++   D           +S  V PA+ + 
Sbjct: 209 RELLIEESLLGWKEYEMEVVRDKKDNCIIVCSIENLDPMGIHT----GDSITVAPAQTLT 264

Query: 221 LDIYKEVQRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
              Y+ ++  +    + IG   G S   F  +P   ++  +E+N 
Sbjct: 265 DKEYQILRNASLAVLREIGVDTGGSNVQFSINPKDGRMVVIEMNP 309


>gi|1695643|dbj|BAA11239.1| pyruvate carboxylase [Schizosaccharomyces pombe]
          Length = 1185

 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 78/222 (35%), Gaps = 19/222 (8%)

Query: 56  NVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
           N++H  +G   E+      +    + +            DK +++ +   CGVPV P   
Sbjct: 110 NLVHPGYGFLSENAEFARKVNEAGMQFVGPSPEVIDSLGDKTKARAIAIRCGVPVVPGTP 169

Query: 113 VNRFTMDSQHLI----SPPYVIKPLKGGSSLGIIVIKKD----QSIPLDLLQSSSWNHGD 164
                 +           P +IK   GG   G+ V++      +S      ++ +     
Sbjct: 170 GPVEHYEEAEAFVKEYGLPVIIKAAMGGGGRGMRVVRSADTLKESFERARSEALASFGDG 229

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLD 222
            + IE+++D    +   +M D + +V              ++        + PA  +   
Sbjct: 230 TVFIERFLDKPKHIEIQLMADKAGNVI-----HLHERDCSVQRRHQKVVEIAPAKDLDPK 284

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           I + +   A    + +       ++FL D   R  +++EIN 
Sbjct: 285 IRQALYDDAIKIAKEVKYCNAGTAEFLLDQKGRH-YFIEINP 325


>gi|121726791|ref|ZP_01680009.1| hypothetical protein VCV52_2288 [Vibrio cholerae V52]
 gi|121630825|gb|EAX63209.1| hypothetical protein VCV52_2288 [Vibrio cholerae V52]
          Length = 483

 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 30/182 (16%), Positives = 70/182 (38%), Gaps = 10/182 (5%)

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIK 145
             +K+   +++ +  VP   S+++  F  + Q      +  P V+K   G  S G++ ++
Sbjct: 275 CTNKVFLTELLETNKVPAPKSVIIRSFDPEWQTGLMEQLDFPMVLKIPDGAFSRGVVKVR 334

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYEL 204
            +Q +  +    + +     +L + +     +   GVM   ++   +  + +  +  Y+ 
Sbjct: 335 NEQELEKEA--GTLFEKSALILAQAFMPTDFDWRIGVMNRQAIFACKYMMSRGHWQIYQH 392

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             S   +           + K V  +A  A   IG       D     +  +V+ +E+N 
Sbjct: 393 HNSGRVTAGGFETLDLKQVPKHVVDVAVKAANLIGGGLYG-VD--LKEIDGQVYVIEVND 449

Query: 265 QP 266
            P
Sbjct: 450 NP 451


>gi|238024023|ref|YP_002908255.1| hypothetical protein bglu_2g05770 [Burkholderia glumae BGR1]
 gi|237878688|gb|ACR31020.1| Hypothetical protein bglu_2g05770 [Burkholderia glumae BGR1]
          Length = 395

 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 28/203 (13%), Positives = 71/203 (34%), Gaps = 20/203 (9%)

Query: 67  LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTMDSQHLI 124
            V A+ E L +P     + ++    DK+  K  +++ G+P      + +           
Sbjct: 79  RVAALREALGLP--GQSVQSARAYRDKVLMKDHMAAAGIPTARYRRLALAPDLPGFIEEH 136

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC-GVMG 183
             P V+KP+    S G+ V+++ + +     + ++  +    ++E +V+G      G++ 
Sbjct: 137 GYPVVVKPVDAAGSRGVRVLREARDLHDFQREQTARQY----MVETFVEGTMFHVNGLLR 192

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG- 242
               +        +    Y+      + T         ++ + +         A+     
Sbjct: 193 GGRYEFIVPYRYVNSSLDYQAAGCYGSLTMQP----DTELGERLVTFCKRVIAALPATDP 248

Query: 243 ISRSDF---LFDPLSRKVFWLEI 262
           ++   F   +F      +   EI
Sbjct: 249 LA---FHAEIFCAPDGTLLLNEI 268


>gi|229528675|ref|ZP_04418065.1| ribosomal protein S6 modification enzyme [Vibrio cholerae 12129(1)]
 gi|229332449|gb|EEN97935.1| ribosomal protein S6 modification enzyme [Vibrio cholerae 12129(1)]
 gi|327484835|gb|AEA79242.1| ribosomal protein S6 glutaminyl transferase-like protein [Vibrio
           cholerae LMA3894-4]
          Length = 483

 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 30/182 (16%), Positives = 71/182 (39%), Gaps = 10/182 (5%)

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIK 145
             +K+   +++ +  VP   S+++  F  + +      +  P V+K   G  S G++ ++
Sbjct: 275 CTNKVFLTELLETNKVPAPKSVIIRSFDPEWKTGLMEQLDFPMVLKIPDGAFSRGVVKVR 334

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYEL 204
            +Q +  +   S+ +     +L + +     +   GVM   ++   +  + +  +  Y+ 
Sbjct: 335 NEQELEKEA--STLFEKSALILAQAFMPTDFDWRIGVMNRQAIFACKYMMSRGHWQIYQH 392

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             S   +           + K V  +A  A   IG       D     +  +V+ +E+N 
Sbjct: 393 HNSGRVTAGGFETLDLKQVPKHVVDVAVKAANLIGGGLYG-VD--LKEIDGQVYVIEVND 449

Query: 265 QP 266
            P
Sbjct: 450 NP 451


>gi|254440809|ref|ZP_05054302.1| acetyl-CoA carboxylase, biotin carboxylase [Octadecabacter
           antarcticus 307]
 gi|198250887|gb|EDY75202.1| acetyl-CoA carboxylase, biotin carboxylase [Octadecabacter
           antarcticus 307]
          Length = 449

 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 33/220 (15%), Positives = 69/220 (31%), Gaps = 18/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---- 109
            +H  +G   E+     ++E   + +            DK+ +K  + + GVP  P    
Sbjct: 77  AIHPGYGFLSENAQFVQVVEDHGLTFIGPTAEHIRTMGDKITAKDTMKALGVPCVPGSPG 136

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
            +      +        P +IK   GG   G+ V      +      + +         +
Sbjct: 137 GVDTVEDALKIGEEFGYPVIIKATAGGGGKGMKVANSADEMKSAFQTARAEGKSNFGNSE 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+Y+     +   V GD       +            K             I  +  
Sbjct: 197 VYIEKYLTTPRHIEIQVFGDGKGKAVHLGERDCSLQRRHQKVF----EEAPGPSITPEER 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             + ++   A   I   G    +FL+   + + +++E+N 
Sbjct: 253 ARIGKVCADACANINYIGAGTIEFLY--ENGEFYFIEMNT 290


>gi|124023089|ref|YP_001017396.1| carbamoyl phosphate synthase large subunit [Prochlorococcus marinus
           str. MIT 9303]
 gi|123963375|gb|ABM78131.1| carbamoyl-phosphate synthase, large subunit [Prochlorococcus
           marinus str. MIT 9303]
          Length = 1102

 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 58/283 (20%), Positives = 97/283 (34%), Gaps = 44/283 (15%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL D GF+V  +         D +              V  V+   +PD    
Sbjct: 29  SGTQACKALRDEGFEVVLVNSNPASIMTDPEMADRTYIEPLTPEVVARVIELERPDALLP 88

Query: 57  VLHGN--------FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
            + G           E+      LE   +    + + A   + D+   KQ +   GV VC
Sbjct: 89  TMGGQTALNLAVALAENHT----LERFGVELIGADLAAIRKAEDRQLFKQAMERIGVDVC 144

Query: 109 PSIL---VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
           PS +   +       + + S P +I+P       G  +    +            +   Q
Sbjct: 145 PSGIASSLKEAEEVGEVINSFPRIIRPAFTLGGSGGGIAYNPEEFAAICKSGLDASPVSQ 204

Query: 166 LLIEQYVDG-IELTCGVMGD-ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
           +LIE+ + G  E    VM D A   V   ++   D           +S  V PA+ +   
Sbjct: 205 ILIEKSLLGWKEFELEVMRDLADNVVIVCSIENLDAMGVHT----GDSITVAPAQTLTDR 260

Query: 223 IYKEVQRLAFLAHQAIG-CRGISRSDFLFDPLSRKVFWLEINV 264
            Y+ ++  +    + IG   G S   F  +P   +V  +E+N 
Sbjct: 261 EYQRLRDQSIAIIREIGVATGGSNIQFAINPDDGEVVVIEMNP 303



 Score = 48.2 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/220 (14%), Positives = 81/220 (36%), Gaps = 16/220 (7%)

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---ISPPYVIKPLKGGS 137
            +   +   + D+ + + ++    +    + L  R   D++ +   I  P V++P     
Sbjct: 687 GTSPESIDQAEDREQFEAILRQLQIRQPRNGLA-RSEEDARAVALRIGYPVVVRPSYVLG 745

Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPK 196
              + V+  +Q +   + ++        +LI+QY++  +E+    + D+   V    + +
Sbjct: 746 GRAMEVVFDEQELNRYMAEAVQVEPDHPVLIDQYLENAVEVDVDALCDSDGVVVIGGLME 805

Query: 197 SDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF---DP 252
              +       S +S   LP   +     + ++  +     A+  +G+    F     + 
Sbjct: 806 ---HIEPAGIHSGDSACCLPSISLGEQALRTIRLWSEALALALKVQGLINLQFAVQRDEA 862

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
              +VF +E N +   T     P +A   G     +   +
Sbjct: 863 GDEQVFIIEANPRASRT----VPFVAKATGVPLARIATRI 898


>gi|108761153|ref|YP_628626.1| ribosomal protein S6 modification protein [Myxococcus xanthus DK
           1622]
 gi|108465033|gb|ABF90218.1| ribosomal protein S6 modification protein [Myxococcus xanthus DK
           1622]
          Length = 329

 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 38/236 (16%), Positives = 90/236 (38%), Gaps = 28/236 (11%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---QHLISPPY 128
            E++ +P   +   + A S DK+R+ Q +S  G+ +  +++ +  +      + +   P 
Sbjct: 113 FEMMGVP-VLNPPTSIARSRDKLRALQYLSRSGLDIPRTVMAHDRSNVRRLVEEVNGLPV 171

Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV---DGIELTCGVMGDA 185
           +IK +KG   +G+++      +    +  + W+ G +++++++V   +G ++   V+GD 
Sbjct: 172 IIKLIKGTQGVGVMIAHTLPEVQT--ILDTFWDLGQEIVLQEFVAESEGRDVRALVVGDR 229

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
            +          +F S   +     +          ++       A  A + +G      
Sbjct: 230 VVGAMRRKAKSGEFRSNIHRGGEGQAI---------ELTAPYTEAAVRAARVVGLEVAG- 279

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR-ELLLWMVEDASCLR 300
            D L          +EIN  PG         +    G      ++   ++ A   R
Sbjct: 280 VDML--EGHAGPRLMEINSSPGFEG------LERATGMDIAGAIIDHALKYAEAKR 327


>gi|326531340|dbj|BAK05021.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 1172

 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 54/292 (18%), Positives = 107/292 (36%), Gaps = 43/292 (14%)

Query: 6   GGIS----SEREVSLSSGKACASALEDAGFKVSQIDVD---------------------R 40
           GG+S     E + S   G     AL+++      I+ +                      
Sbjct: 98  GGLSIGQAGEFDYS---GSQAIKALKESNIDTILINPNIATIQTSHHLADTIFFLPVTAD 154

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRS 96
            V  VL   +PD       G    +  +Q     ILE L +    + I    +S D+   
Sbjct: 155 YVAYVLEKERPDGILLTFGGQSALNVGIQLDKMGILERLGVQVLGTPIRTLEVSEDRDLF 214

Query: 97  KQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154
            Q ++   +P   S+ V+  +  +D+   I  P +++       LG      ++ +    
Sbjct: 215 VQALNEIDIPAAHSVAVSSIQGALDAAAQIGYPIIVRSAFSLGGLGSGFAHDEEELR--N 272

Query: 155 LQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASL-DVTEIAVPKSDFYSYELKYSSLNST 212
           L + S +   Q+L+E+ + G  E+   V+ DA+   +    +   D           +S 
Sbjct: 273 LSAKSLSLSPQILVEKSLKGWKEVEYEVVRDAADNTIICCNMENFDPLGTHT----GDSI 328

Query: 213 HVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            V P++ +  + Y  ++  A    + +G  G     +  +P S +   +E+N
Sbjct: 329 VVAPSQTLTDEEYHMLRSAAIKIVRHVGVVGECNVQYALNPKSNEYMVIEMN 380



 Score = 42.0 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 34/241 (14%), Positives = 82/241 (34%), Gaps = 25/241 (10%)

Query: 19  GKACASALEDAG-------FKVSQI--DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLV- 68
              C+ A+ + G       +    +  D D +  L    L  +   ++      E  +V 
Sbjct: 654 AVTCSRAVRNLGKKTIMINYNPETVSTDFDEADRLYFEELGFERVMDIYEMEGAEGAVVS 713

Query: 69  ------QAI---LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFT 117
                 Q I   L+   +    +       + D+ +   ++ S GV        +     
Sbjct: 714 VGGQLPQNIALRLKNSGVNVLGTDPEQIDNAEDRHKFSSILDSIGVDQPDWTEASSLEDA 773

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
               + +  P +I+P    S   + V+  + ++   L  ++  +    ++I +++D  + 
Sbjct: 774 KAFANRVGYPVLIRPSYVLSGAAMNVVWDESTMDHFLSAAADVSPDHPVVITKFIDNAQE 833

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQ 236
              +  DA      + V     +       S ++T VLP   +  +    ++ +A    +
Sbjct: 834 ---IDVDAVAHKGRLIVHAVSEHVENAGVHSGDATLVLPPFSLSDEDLDRLKVIAEKVGK 890

Query: 237 A 237
           A
Sbjct: 891 A 891


>gi|297539178|ref|YP_003674947.1| carbamoyl-phosphate synthase large subunit [Methylotenera sp. 301]
 gi|297258525|gb|ADI30370.1| carbamoyl-phosphate synthase, large subunit [Methylotenera sp. 301]
          Length = 1068

 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 30/196 (15%), Positives = 80/196 (40%), Gaps = 7/196 (3%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--QHLISPPYV 129
           LE   +P   +   A  ++ D+ R ++++   G+   P+               I  P V
Sbjct: 648 LEKAGVPIIGTTPDAIDMAEDRERFQKMLQELGLKQPPNRTARTPDEAIRLALEIGYPLV 707

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++++   +   + ++   ++   +L+++++ D +E+    + D + D
Sbjct: 708 VRPSYVLGGRAMEIVQEQSQLERYMREAVKVSNESPVLLDRFLNDALEVDVDALCDNTGD 767

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           V    + +    +    +S  ++  + P  +   +  E++       +A+G  G+    F
Sbjct: 768 VIIGGIMEHVEQAGV--HSGDSACSLPPFSLSAKLQDELRDQTKQMARALGVVGLMNVQF 825

Query: 249 LFDPLSRKVFWLEINV 264
                 + VF LE+N 
Sbjct: 826 AI--QGKTVFVLEVNP 839



 Score = 61.3 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 47/278 (16%), Positives = 102/278 (36%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D +            + V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPVTWQVVEKIIAKERPDALLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      +L   ++    +   A   + D+ + K+ ++  G+    S +
Sbjct: 89  TMGGQTALNCALDLDKHGVLAKYKVELIGASKEAIDKAEDRQKFKEAMTKIGLGSARSAV 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     +  Q  I  P +I+P       G  +    +       +    +  ++LLIE+
Sbjct: 149 AHSMEEALQVQASIGYPTIIRPSFTMGGSGGGIAYNREEFISICERGLDASPTNELLIEE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D++ +   I   ++ D           +S  V PA+ +    Y+ +
Sbjct: 209 SLLGWKEYEMEVVRDSADNCIIICSIENLDPMGVHT----GDSITVAPAQTLSDKEYQIM 264

Query: 228 QRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P   ++  +E+N 
Sbjct: 265 RNASLAVLREIGVDTGGSNVQFAINPDDGRMIVIEMNP 302


>gi|227358194|ref|ZP_03842535.1| carbamoyl-phosphate synthase large chain [Proteus mirabilis ATCC
           29906]
 gi|227161530|gb|EEI46567.1| carbamoyl-phosphate synthase large chain [Proteus mirabilis ATCC
           29906]
          Length = 1075

 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 98/278 (35%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D +            + V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVVLVNSNPATIMTDPEMADATYIEPIHWQVVRKIIEKERPDAILP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +    Q +L    +    +   A   + D+ R  + +   G+    S +
Sbjct: 89  TMGGQTALNCALELERQGVLTEFGVTMIGATADAIDKAEDRQRFDKAMKKIGLDTARSGI 148

Query: 113 VNRFTMDS--QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +           +  P +I+P       G  +    +       +    +  ++LLI++
Sbjct: 149 AHTMDEAFAVAEQVGFPCIIRPSFTMGGTGGGIAYNREEFEEICTRGLDLSPTNELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + +   +   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIEN----FDAMGIHTGDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  DP + ++  +E+N 
Sbjct: 265 RNASMAVLREIGVETGGSNVQFAVDPKTGRLIVIEMNP 302



 Score = 62.1 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 34/197 (17%), Positives = 75/197 (38%), Gaps = 10/197 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           LE   +P   +   A   + D+ R ++ V   G+    +  V      +D    I  P V
Sbjct: 654 LEAEGVPVIGTSPDAIDKAEDRERFQKAVDKLGLKQPENATVTTLEEAVDKAKSIGYPLV 713

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  +  +      + S ++   +L+++++ D IE+    + D    
Sbjct: 714 VRPSYVLGGRAMEIVYDEIDLRRYFQTAVSVSNDAPVLLDRFLDDAIEVDVDAICDGQQV 773

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           V    +   +    +    S +S   LPA  +  DI   +++        +G +G+    
Sbjct: 774 VIGGIMEHIE----QAGVHSGDSACSLPAYTLSQDIQDIMRKQVRELAFELGVKGLMNVQ 829

Query: 248 FLFDPLSRKVFWLEINV 264
           F        V+ +E+N 
Sbjct: 830 FAV--KGNDVYLIEVNP 844


>gi|156036300|ref|XP_001586261.1| hypothetical protein SS1G_12839 [Sclerotinia sclerotiorum 1980]
 gi|154698244|gb|EDN97982.1| hypothetical protein SS1G_12839 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 1207

 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 88/222 (39%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
           ++H  +G   E+      +E   + +            DK+ ++++    GVPV P    
Sbjct: 116 MIHPGYGFLSENAEFARNVEKAGLIFVGPSPTVIDALGDKVSAREIAIKAGVPVVPGTEG 175

Query: 112 LVNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS-----SSWNHGD 164
            V +F    +       P +IK   GG   G+ V+++   +     ++     S++    
Sbjct: 176 AVEKFEDVKKFTDEFGFPIIIKAAYGGGGRGMRVVRQQSDLEDAFNRATSEAKSAFG-NG 234

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLD 222
            + +E+++D    +   ++GD   ++  +           ++        + PA  +P +
Sbjct: 235 TVFVERFLDKPKHIEVQLLGDNHGNIVHLYE-----RDCSVQRRHQKVVEIAPAKDLPQE 289

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +   +   A    +++  R    ++FL D  +R  +++EIN 
Sbjct: 290 VRDNLLNDAVKLAKSVNYRNAGTAEFLVDQQNR-YYFIEINP 330


>gi|149927093|ref|ZP_01915351.1| carbamoyl-phosphate synthase large subunit [Limnobacter sp. MED105]
 gi|149824314|gb|EDM83534.1| carbamoyl-phosphate synthase large subunit [Limnobacter sp. MED105]
          Length = 1076

 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 29/196 (14%), Positives = 81/196 (41%), Gaps = 8/196 (4%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL--ISPPYV 129
           LE   +P   +   +  ++ D+ R +++++   +   P+           H   I  P V
Sbjct: 655 LEANGVPIIGTSPESIDIAEDRERFQKLLTKLNLRQPPNRTARTEAEAIAHAQEIGYPLV 714

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++ + + +   + ++   ++   +L+++++ D IE+    + D    
Sbjct: 715 VRPSYVLGGRAMEIVHEQKDLERYMREAVKVSNDSPVLLDRFLNDAIEVDVDALCDGQTV 774

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           +    +   +       +S  ++  + P  +  D+  E++R + L  +A+   G+    F
Sbjct: 775 MIGGVMEHIEQAGV---HSGDSACCLPPYSLSADMVTELKRQSELMAKALNVIGLMNVQF 831

Query: 249 LFDPLSRKVFWLEINV 264
                +  V+ LE+N 
Sbjct: 832 AI--QNDTVYVLEVNP 845



 Score = 60.9 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 48/285 (16%), Positives = 103/285 (36%), Gaps = 42/285 (14%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +              DV        + V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYKVVLVNSNPATIMTDPEMADVTYIEPITWQVVERIIEKERPDAVLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      +L    +    +   A   + D+++ K  ++S G+    S +
Sbjct: 89  TMGGQTALNCALDLAKHGVLAKYNVELIGAKEEAIEKAEDRLKFKNAMTSIGLDSAKSGV 148

Query: 113 VN--RFTMDSQHLI-------SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
            +     ++ Q  I         P +I+P       G  +    +       +    +  
Sbjct: 149 AHSMEEALEVQARIAKEVGSNGFPVIIRPSFTLGGTGGGIAYNAEEFETICRRGLEASPT 208

Query: 164 DQLLIEQYVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IP 220
           ++LLIE+ + G  E    V+ D++ + +   ++   D           +S  V PA+ + 
Sbjct: 209 NELLIEESLIGWKEYEMEVVRDSADNCIIVCSIENLDPMGVHT----GDSITVAPAQTLT 264

Query: 221 LDIYKEVQRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
              Y+ ++  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 DREYQLMRNASIAILREIGVDTGGSNVQFSINPANGRMIVIEMNP 309


>gi|145349322|ref|XP_001419085.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144579316|gb|ABO97378.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 1132

 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 76/221 (34%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       E   I              DK+ +K     CG+P+ P    
Sbjct: 53  AIHPGYGFLSENAAFARRCEEEGIVMIGPKSQTLTEMGDKVIAKAKAKECGLPLVPGTEE 112

Query: 114 NRFT----MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
                   ++       P ++K   GG   G+ V+K+   +     ++SS         +
Sbjct: 113 ATADVNDALEFAKEFGMPIMLKAAMGGGGRGMRVVKEYSELEDAFKRASSEAQTAFGDGR 172

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDI 223
           + +E+YV+    +   ++ D   +V              ++        + PA  +   +
Sbjct: 173 MFLERYVEAPRHIEVQILADNYGNVV-----HLGERDCSVQRRHQKVVELAPAPNLDPVL 227

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +   A    + +  R     +F+ D   R  ++LE+N 
Sbjct: 228 RQRLFDDAVALAKHVNYRNAGTVEFMVDKQGRH-YFLEVNP 267


>gi|220928369|ref|YP_002505278.1| carbamoyl-phosphate synthase L chain ATP-binding [Clostridium
           cellulolyticum H10]
 gi|219998697|gb|ACL75298.1| Carbamoyl-phosphate synthase L chain ATP-binding [Clostridium
           cellulolyticum H10]
          Length = 513

 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 40/223 (17%), Positives = 79/223 (35%), Gaps = 24/223 (10%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E       +E   + +         L  +K  ++ +     +P+ P   +
Sbjct: 77  AIHPGYGFLSEKEEFAKAVEDAGLIFIGPSAQVIKLLGNKFEARTIAERLSIPLIPG--L 134

Query: 114 NRFTMDSQHL------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ----SSSWNHG 163
           NR   +          I  P +IKP  GG   G+ + K    +     +    + S  H 
Sbjct: 135 NRAINNIAEAEQIASSIGYPVMIKPAAGGGGKGMYIAKSKDELKDAFFKSQSMAESIFHN 194

Query: 164 DQLLIEQYVDGI-ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPL 221
           D + IE+Y   +  +   ++ D   +V  +   +        K          P   I  
Sbjct: 195 DSVFIERYYTDVHHIEVQLLADKYGNVVHLGERECSIQRRFQK-----IVEEAPCLTISQ 249

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           ++  E+   A    + +   G    +FL+   + +VF+LE+N 
Sbjct: 250 ELKNEIFEYAVSIAKEVHYTGAGTVEFLY--SNGEVFFLELNT 290


>gi|18976798|ref|NP_578155.1| phosphoribosylaminoimidazole carboxylase ATPase subunit [Pyrococcus
           furiosus DSM 3638]
 gi|18892393|gb|AAL80550.1| phosphoribosylaminoimidazole carboxylase [Pyrococcus furiosus DSM
           3638]
          Length = 372

 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 60/290 (20%), Positives = 102/290 (35%), Gaps = 54/290 (18%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-------------------DRS 41
           + +L GG            K  A   +  GFKV+ +D                    D  
Sbjct: 3   VGILGGG---------QLAKMMAQEAKKMGFKVAILDPQEEPPAKGVSDYHILGSFKDEK 53

Query: 42  VGLVLAHLKPDLAFNVLHGNFGEDGLVQAI--LELLEIP-YTHSGILASALSMDKMRSKQ 98
               LA +   L +++ H N      VQA+  LE   +  Y    +L   +  DK+   Q
Sbjct: 54  AIRKLAEISDVLTYDIEHIN------VQALKELEKEGVQIYPSPRVLE--IIQDKLVQMQ 105

Query: 99  VVSSCGVPVCPSILVNRFTM-DSQHLISPPYVIKPLKGG-SSLGIIVIKKDQSIPLDLLQ 156
           V+   G+PV   I  ++  + D       P V K  + G    G+ VI+    +   +  
Sbjct: 106 VMKEAGIPVPRFIKADKDELVDKALEFGFPLVQKTRREGYDGKGVAVIRDKSELAKLIPA 165

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216
            S       +  E  V       G     +  V E+   +++               + P
Sbjct: 166 DSMLQEFVNIEKEIAVMVARDQEG--NTVAYPVVEMTFNEANILD----------MLIAP 213

Query: 217 AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
           A+I  +I +E +R+A  A +A+   GI   +        +V+  EI  +P
Sbjct: 214 ARIEEEIAEEAKRIAIKAVKALDGVGIFGVEMFLTK-DGEVYLNEIAPRP 262


>gi|167582310|ref|ZP_02375184.1| carbamoyl phosphate synthase large subunit [Burkholderia
           thailandensis TXDOH]
          Length = 1084

 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 26/203 (12%), Positives = 73/203 (35%), Gaps = 13/203 (6%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQHLISPPYV 129
           LE   +P   +       + D+ R ++++   G+   P+         +     I  P V
Sbjct: 655 LEAHGVPIIGTSPDMIDAAEDRERFQKLLQDLGLRQPPNRTARAEDEALALADEIGYPLV 714

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++ + + +   + ++   ++   +L+++++ D IE     + D    
Sbjct: 715 VRPSYVLGGRAMEIVHEPRDLERYMREAVKVSNDSPVLLDRFLNDAIECDVDCICDGDAV 774

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                +   +       +S  ++  + P  +  +   E++R      +A+   G+    F
Sbjct: 775 FIGGVMEHIEQAGV---HSGDSACSLPPYSLSKETVAELKRQTGAMAKALNVVGLMNVQF 831

Query: 249 LFD-------PLSRKVFWLEINV 264
                          ++ LE+N 
Sbjct: 832 AIQQVPQQDGSKEDVIYVLEVNP 854



 Score = 64.0 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 49/285 (17%), Positives = 98/285 (34%), Gaps = 42/285 (14%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +              DV          V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYKVILVNSNPATIMTDPSTADVTYIEPITWEVVERIIAKERPDAILP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      +L+   +    +   A   + D+ + K  ++  G+    S +
Sbjct: 89  TMGGQTALNCALDLFHHGVLDKYGVELIGASPEAIDKAEDRQKFKDAMTKIGLGSAKSGI 148

Query: 113 ---------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
                    V+   M +      P VI+P       G  +    +       +    +  
Sbjct: 149 AHSLEEAHKVHGEIMAATGGSGYPVVIRPSFTLGGSGGGIAYNREEFEEICKRGLDLSPT 208

Query: 164 DQLLIEQYVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IP 220
            +LLIE+ + G  E    V+ D + + +   ++   D           +S  V PA+ + 
Sbjct: 209 RELLIEESLLGWKEYEMEVVRDRADNCIIVCSIENLDPMGVHT----GDSITVAPAQTLT 264

Query: 221 LDIYKEVQRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
              Y+ ++  +    + IG   G S   F  +P   ++  +E+N 
Sbjct: 265 DKEYQILRNASLAVLREIGVDTGGSNVQFSINPKDGRMVVIEMNP 309


>gi|83718685|ref|YP_443293.1| carbamoyl phosphate synthase large subunit [Burkholderia
           thailandensis E264]
 gi|167620407|ref|ZP_02389038.1| carbamoyl phosphate synthase large subunit [Burkholderia
           thailandensis Bt4]
 gi|257139529|ref|ZP_05587791.1| carbamoyl phosphate synthase large subunit [Burkholderia
           thailandensis E264]
 gi|83652510|gb|ABC36573.1| carbamoyl-phosphate synthase, large subunit [Burkholderia
           thailandensis E264]
          Length = 1084

 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 26/203 (12%), Positives = 73/203 (35%), Gaps = 13/203 (6%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQHLISPPYV 129
           LE   +P   +       + D+ R ++++   G+   P+         +     I  P V
Sbjct: 655 LEAHGVPIIGTSPDMIDAAEDRERFQKLLQDLGLRQPPNRTARAEDEALALADEIGYPLV 714

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++ + + +   + ++   ++   +L+++++ D IE     + D    
Sbjct: 715 VRPSYVLGGRAMEIVHEPRDLERYMREAVKVSNDSPVLLDRFLNDAIECDVDCICDGDAV 774

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                +   +       +S  ++  + P  +  +   E++R      +A+   G+    F
Sbjct: 775 FIGGVMEHIEQAGV---HSGDSACSLPPYSLSKETVAELKRQTGAMAKALNVVGLMNVQF 831

Query: 249 LFD-------PLSRKVFWLEINV 264
                          ++ LE+N 
Sbjct: 832 AIQQVPQQDGSKEDVIYVLEVNP 854



 Score = 64.8 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 50/285 (17%), Positives = 98/285 (34%), Gaps = 42/285 (14%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +              DV          V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYKVILVNSNPATIMTDPSTADVTYIEPITWEVVERIIAKERPDAILP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      +LE   +    +   A   + D+ + K  ++  G+    S +
Sbjct: 89  TMGGQTALNCALDLFHHGVLEKYGVELIGASPEAIDKAEDRQKFKDAMTKIGLGSAKSGI 148

Query: 113 ---------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
                    V+   M +      P VI+P       G  +    +       +    +  
Sbjct: 149 AHSLEEAHKVHGEIMAATGGSGYPVVIRPSFTLGGSGGGIAYNREEFEEICKRGLDLSPT 208

Query: 164 DQLLIEQYVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IP 220
            +LLIE+ + G  E    V+ D + + +   ++   D           +S  V PA+ + 
Sbjct: 209 RELLIEESLLGWKEYEMEVVRDRADNCIIVCSIENLDPMGVHT----GDSITVAPAQTLT 264

Query: 221 LDIYKEVQRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
              Y+ ++  +    + IG   G S   F  +P   ++  +E+N 
Sbjct: 265 DKEYQILRNASLAVLREIGVDTGGSNVQFSINPKDGRMVVIEMNP 309


>gi|56708675|ref|YP_170571.1| carbamoyl phosphate synthase large subunit [Francisella tularensis
           subsp. tularensis SCHU S4]
 gi|110671147|ref|YP_667704.1| carbamoyl phosphate synthase large subunit [Francisella tularensis
           subsp. tularensis FSC198]
 gi|134302748|ref|YP_001122716.1| carbamoyl phosphate synthase large subunit [Francisella tularensis
           subsp. tularensis WY96-3418]
 gi|224457882|ref|ZP_03666355.1| carbamoyl phosphate synthase large subunit [Francisella tularensis
           subsp. tularensis MA00-2987]
 gi|254371307|ref|ZP_04987309.1| carbamoyl-phosphate synthase large chain [Francisella tularensis
           subsp. tularensis FSC033]
 gi|254875549|ref|ZP_05248259.1| carbamoyl-phosphate synthase large chain [Francisella tularensis
           subsp. tularensis MA00-2987]
 gi|56605167|emb|CAG46297.1| Carbamoyl-phosphate synthase large chain [Francisella tularensis
           subsp. tularensis SCHU S4]
 gi|110321480|emb|CAL09680.1| Carbamoyl-phosphate synthase large chain [Francisella tularensis
           subsp. tularensis FSC198]
 gi|134050525|gb|ABO47596.1| Carbamoyl-phosphate synthase, large subunit [Francisella tularensis
           subsp. tularensis WY96-3418]
 gi|151569547|gb|EDN35201.1| carbamoyl-phosphate synthase large chain [Francisella tularensis
           subsp. tularensis FSC033]
 gi|254841548|gb|EET19984.1| carbamoyl-phosphate synthase large chain [Francisella tularensis
           subsp. tularensis MA00-2987]
 gi|282159922|gb|ADA79313.1| carbamoyl phosphate synthase large subunit [Francisella tularensis
           subsp. tularensis NE061598]
          Length = 1094

 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 48/278 (17%), Positives = 100/278 (35%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG      L++ G+ V  +         D               SVG ++A  +PD    
Sbjct: 29  SGTQACKVLKEDGYTVFLVNSNPATIMTDPTTTDKIFIEPITVESVGKIIARERPDAILP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      ILE   +    +   +   + ++ R  + ++  G+ V  +++
Sbjct: 89  TVGGQTALNCALALDKAGILEKYNVEMLGAKADSIDKAENRERFNKAMAKIGLEVPRNVV 148

Query: 113 VNRFTMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           V       + L  I  P +I+P       G  +    +     +    S +  +++LI++
Sbjct: 149 VQSLEQAYKALEDIGLPAIIRPSFTLGGSGGGIAYTKEEFEKIVKNGLSLSPTNEVLIDE 208

Query: 171 YVDG-IELTCGVMGDASL-DVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEV 227
            + G  E    V+ D +   +   ++   D           +S  V PA  +    Y+ +
Sbjct: 209 SILGWKEYEMEVIRDKADNSIIVCSIENIDPMGIHT----GDSITVAPALTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P   K+  +E+N 
Sbjct: 265 RDASIAVLREIGVETGGSNVQFAVNPKDGKLVVIEMNP 302



 Score = 61.3 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 34/221 (15%), Positives = 85/221 (38%), Gaps = 13/221 (5%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI--SPPYVIKPL 133
            IP   +      L+ D+ R K+++   G+    + +        + ++    P V++P 
Sbjct: 673 NIPILGTDPDKIDLAEDRERFKELLDKVGLKQPLNTIAYTINELKKKIVNVGYPVVVRPS 732

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEI 192
                  + +I   + +   +  +S       +LI++++ D  EL    + D    V   
Sbjct: 733 NVLGGRAMEIIHSQEELDAYIKTNSKCILEGPILIDKFLEDATELDVDALADGGERVFVA 792

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
            + +   +  E    S +S   +P + +  +  +EV++      + +   G+    F + 
Sbjct: 793 GIME---HIEEAGIHSGDSACSIPTRSLSNEQIEEVKQATIKLARELNVIGLMNVQFAY- 848

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
             + +++ +E+N +   T     P +A   G S   +   +
Sbjct: 849 -QNGQLYVIEVNPRASRT----VPFVAKATGNSIANIATKL 884


>gi|330892744|gb|EGH25405.1| carbamoyl phosphate synthase large subunit [Pseudomonas syringae
           pv. mori str. 301020]
          Length = 329

 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 29/196 (14%), Positives = 75/196 (38%), Gaps = 8/196 (4%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYV 129
           LE   +P   +   A   + D+ R +Q+V    +   P+  V        +   I  P V
Sbjct: 40  LEAAGVPIIGTSPDAIDRAEDRERFQQMVERLNLRQPPNATVRSEDEAIRAAAKIGYPLV 99

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLD 188
           ++P        + ++ ++  +   L ++   ++   +L++ +++  IE+    + D +  
Sbjct: 100 VRPSYVLGGRAMEIVYQEDELKRYLREAVQVSNDSPVLLDHFLNCAIEMDVDAVCDGTDV 159

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           V    +   +       +S  ++  + P  +P  I  E++         +G  G+   + 
Sbjct: 160 VIGAIMQHIEQAGV---HSGDSACSLPPYSLPAHIQDEMREQVKKMALELGVVGL--MNV 214

Query: 249 LFDPLSRKVFWLEINV 264
                   ++ +E+N 
Sbjct: 215 QLALQGEDIYVIEVNP 230


>gi|319794415|ref|YP_004156055.1| acetyL-CoA carboxylase, biotin carboxylase [Variovorax paradoxus
           EPS]
 gi|315596878|gb|ADU37944.1| acetyl-CoA carboxylase, biotin carboxylase [Variovorax paradoxus
           EPS]
          Length = 682

 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 75/220 (34%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+      +E   I +      + A   DK+ SK++ +   V   P    
Sbjct: 77  AVHPGYGFLSENEAFARKVEEEGIAFIGPKHYSIAAMGDKIASKKLANEAKVNTIPGWND 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
            I      ++    I  P +IK   GG   G+ V   D+          +        D+
Sbjct: 137 AIETAERAVEIAKDIGYPVMIKASAGGGGKGLRVAFNDKEAFEGFTSCRNEARNSFGDDR 196

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE++V+    +   V+GD+  +V  +   +        K             I     
Sbjct: 197 VFIEKFVEEPRHIEIQVLGDSHGNVIYLNERECSIQRRHQK----VIEEAPSPFITDATR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K +   A    +A+  +     +F      +  ++LE+N 
Sbjct: 253 KAMGAQAVQLAKAVNYQSAGTVEF-VVGKDQSFYFLEMNT 291


>gi|290474746|ref|YP_003467626.1| carbamoyl phosphate synthase, large subunit [Xenorhabdus bovienii
           SS-2004]
 gi|289174059|emb|CBJ80846.1| carbamoyl phosphate synthase, large subunit [Xenorhabdus bovienii
           SS-2004]
          Length = 1074

 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 50/319 (15%), Positives = 110/319 (34%), Gaps = 52/319 (16%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D +              V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAILP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +    Q +L    +    +   A   + D+ R  + +   G+    S +
Sbjct: 89  TMGGQTALNCALELERQGVLTEFSVTMIGATADAIDKAEDRQRFDKAMKKIGLDTARSGI 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     +     +  P +I+P       G  +    +       +    +  ++LLI++
Sbjct: 149 AHTMEEALAVAEDVGFPCIIRPSFTMGGSGGGIAYNREEFEEICERGLDLSPTNELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + +   I   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIICSIEN----FDPMGIHTGDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV-----------QPGMTPVSIFP 275
           +  +    + IG   G S   F  +P + ++  +E+N              G        
Sbjct: 265 RNASMAVLREIGVETGGSNVQFSVNPKNGRLIVIEMNPRVSRSSALASKATGF----PIA 320

Query: 276 EMAA--YAGYSFRELLLWM 292
           ++AA    GY+  EL+  +
Sbjct: 321 KIAAKLAVGYTLDELMNDI 339



 Score = 61.7 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/197 (15%), Positives = 79/197 (40%), Gaps = 10/197 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           LE   +P   +   A   + D+ R +Q V+  G+    +  V+     ++  + +  P V
Sbjct: 654 LEAAGVPIIGTSPDAIDRAEDRERFQQAVNRLGLKQPANATVSTIEQAVEKGNGLGYPLV 713

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  +  +      + S ++   +L+++++ D +E+    + D    
Sbjct: 714 VRPSYVLGGRAMEIVYDETDLRRYFQNAVSVSNDAPVLLDRFLDDAVEVDVDAICDGERV 773

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           +    +   +    +    S +S   LPA  +  +I   +++        +  RG+    
Sbjct: 774 LIGGIMEHIE----QAGVHSGDSACSLPAYTLSQEIQDVMRQQVEKLAFELRVRGLMNVQ 829

Query: 248 FLFDPLSRKVFWLEINV 264
           F     + +V+ +E+N 
Sbjct: 830 FAV--KNNEVYLIEVNP 844


>gi|254787220|ref|YP_003074649.1| carbamoyl phosphate synthase large subunit [Teredinibacter turnerae
           T7901]
 gi|237686984|gb|ACR14248.1| carbamoyl-phosphate synthase, large subunit [Teredinibacter
           turnerae T7901]
          Length = 1073

 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 44/278 (15%), Positives = 102/278 (36%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +              D         ++V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPAMADATYIEPITWQTVAKIIEKERPDAILP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  ++     +LE   +    +   A   + D+ R  + + + G+    + +
Sbjct: 89  TMGGQTALNCALELHANGVLEKFNVELIGATQDAIDKAEDRDRFDKAMKNIGLECARAKI 148

Query: 113 VNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           V+      +       P +I+P       G  +    +      L+    +  ++LLI++
Sbjct: 149 VHTMEEANEVPKEFGFPVIIRPSFTMGGSGGGIAYNWEEFEEICLRGLDLSPTNELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + +   I   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SLLGWKEYEMEVVRDKNDNCIIICSIEN----FDPMGVHTGDSITVAPAQTLTDKEYQLM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RNASVAVLREIGVETGGSNVQFAVNPENGRLVVIEMNP 302



 Score = 62.8 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 34/229 (14%), Positives = 82/229 (35%), Gaps = 19/229 (8%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           L    +P   +   A   + D+ R +Q++   G+   P+ +V      +     +  P V
Sbjct: 653 LAAEGVPIIGTSPEAIDRAEDRERFQQMIHRLGLLQPPNAIVRSTEEALSVAKEVGYPLV 712

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++     +   + ++   +    +L++ ++ + IE+    + D    
Sbjct: 713 VRPSYVLGGRAMEIVYTKSELANYMREAVQASEDAPVLLDHFLNNAIEVDIDAVSDGKDV 772

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           V    +   +       +S  ++  + P  +P D+  E++         +G  G+   + 
Sbjct: 773 VIGAIMQHIEQCGV---HSGDSACSLPPYSLPEDVQNEMREQVRKMAVELGVIGL--MNV 827

Query: 249 LFDPLSRKVFWLEIN-----VQPGMTPV----SIFPEMAA-YAGYSFRE 287
                  K++ +E+N       P         S+    A   AG S  E
Sbjct: 828 QLAYQDGKIYVIEVNPRGSRTVP-FVSKCIGVSLAKVAARCQAGMSLEE 875


>gi|226304927|ref|YP_002764885.1| glycinamide ribonucleotide transformylase PurT [Rhodococcus
           erythropolis PR4]
 gi|226184042|dbj|BAH32146.1| glycinamide ribonucleotide transformylase PurT [Rhodococcus
           erythropolis PR4]
          Length = 411

 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 48/280 (17%), Positives = 89/280 (31%), Gaps = 45/280 (16%)

Query: 19  GKACASALEDAGFKVSQID----------------VD----RSVGLVLAHLKPDLAFNVL 58
           GK    AL+  G +V  +D                VD     ++  V+   KP      +
Sbjct: 37  GKEVVIALQRLGVEVIAVDRYPDAPGHQVAHRAHTVDMTDPEALLAVIELEKPHFVVPEI 96

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKM-RSKQVVSSCGVPVCPSILVNRFT 117
                 D L  A++E            A+ L+M++    +      G+P  P    +   
Sbjct: 97  EAI-ATDAL--ALVEERGAAVVIPTARATQLTMNREGIRRLAAEELGLPTSPYAFADSLA 153

Query: 118 M--DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH--GDQLLIEQYVD 173
               +   I  P VIKP+   S  G   ++  + +      + +       ++++E +VD
Sbjct: 154 EVQAATDRIGFPCVIKPVMSSSGKGQSTVRSAEDLDAAWDYAMAGGRVNHGRVIVEGFVD 213

Query: 174 -------GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE 226
                        G  G       E      +   Y   +         P ++       
Sbjct: 214 FDYEITQLTVRAVGESGQVETSFCEPIGHLQEAGDYIESW--------QPQQMSAVALAS 265

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
            + +A     A+G RGI   +         VF+ E++ +P
Sbjct: 266 ARDVAEKVTTALGGRGIFGVELFV--KGDDVFFSEVSPRP 303


>gi|209522374|ref|ZP_03270989.1| acetyl-CoA carboxylase, biotin carboxylase [Burkholderia sp. H160]
 gi|209497192|gb|EDZ97432.1| acetyl-CoA carboxylase, biotin carboxylase [Burkholderia sp. H160]
          Length = 454

 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 35/222 (15%), Positives = 78/222 (35%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H  +G   E+      +E     +         +  DK+ +KQ +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAERVEQSGFTFIGPRPETIRMMGDKVTAKQTMIKTGVPCVPGSEG 136

Query: 113 ----VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
                 +  +     I  P +IK   GG   G+ V+  + ++   +     ++       
Sbjct: 137 ALPDDPKEIVKIARQIGYPVIIKAAGGGGGRGMRVVHTEAALVNAVNMTREEAGRAFGNP 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
           Q+ +E++++    +   V+ D+  +   +            K          PA  I   
Sbjct: 197 QVYMEKFLENPRHIEIQVLADSFKNAVWLGERDCSMQRRHQK-----VIEEAPAPGIARR 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +   +      A + +G  G    +FL+   + + +++E+N 
Sbjct: 252 LIDRIGDRCADACKKMGYLGAGTFEFLY--ENGEFYFIEMNT 291


>gi|172046049|sp|Q65VI3|PURT_MANSM RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
          Length = 393

 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 53/315 (16%), Positives = 107/315 (33%), Gaps = 52/315 (16%)

Query: 19  GKACASALEDAGFKVSQID--------------------VDRSVGLVLAHLKPDLAFNVL 58
           GK     L+  G +V  +D                       ++  ++   +PD     +
Sbjct: 24  GKEVVIELQRLGVEVIAVDRYKNAPAQQVAHRSYTISMLDGEALKALVEKERPDYIVPEV 83

Query: 59  HGNFGEDGLVQAILELLEIPYTH-SGILASALSMDKM-RSKQVVSSCGVPVCPSILVNRF 116
                E      ++EL +  +T      A+ L+M++    +      G+P      V+ F
Sbjct: 84  -----EAIATATLVELEQKGFTVVPTAKATQLTMNREGIRRLAAEELGLPTSNYQFVDNF 138

Query: 117 TM--DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH--GDQLLIEQYV 172
           T    +   I  P V+KP+   S  G  +IK    I      +         ++++E +V
Sbjct: 139 TDFKSAVENIGIPCVVKPIMSSSGHGQSIIKSFDQIQQAWDYAQQGGRAGAGRVIVEGFV 198

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLA 231
              +    ++    +  T    P         +  + +      P  +     ++ Q++A
Sbjct: 199 K-FDYEITLLTVRHIGGTSFLAPIG------HRQQNGDYRESWQPQAMSEIALQKAQQVA 251

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP---GMT-----PVSIFPEMAAYA-G 282
                A+G RGI   +        +V + E++ +P   GM       +S F   A    G
Sbjct: 252 EKITSALGGRGIFGVEMFV--CGDEVIFNEVSPRPHDTGMVTLISQELSEFALHARAILG 309

Query: 283 YSFRELLLWMVEDAS 297
               E+   ++  A+
Sbjct: 310 LPIPEI--NLISPAA 322


>gi|108798260|ref|YP_638457.1| carbamoyl-phosphate synthase L chain, ATP-binding protein
           [Mycobacterium sp. MCS]
 gi|119867356|ref|YP_937308.1| carbamoyl-phosphate synthase L chain, ATP-binding [Mycobacterium
           sp. KMS]
 gi|126433927|ref|YP_001069618.1| carbamoyl-phosphate synthase L chain, ATP-binding [Mycobacterium
           sp. JLS]
 gi|108768679|gb|ABG07401.1| biotin carboxylase / biotin carboxyl carrier protein [Mycobacterium
           sp. MCS]
 gi|119693445|gb|ABL90518.1| biotin carboxylase / biotin carboxyl carrier protein [Mycobacterium
           sp. KMS]
 gi|126233727|gb|ABN97127.1| biotin carboxylase / biotin carboxyl carrier protein [Mycobacterium
           sp. JLS]
          Length = 602

 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 39/223 (17%), Positives = 76/223 (34%), Gaps = 21/223 (9%)

Query: 56  NVLHGNFG---EDGLV-QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           N +H  +G   E+    QA+++   + +      +     DK+ ++ + +    P+ P  
Sbjct: 83  NAIHPGYGFLSENADFAQAVID-AGLIWIGPSPQSIRDLGDKVTARHIAARAQAPLVPGT 141

Query: 112 LVNRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL----DLLQSSSWNHG 163
                  D           P  IK   GG   G+ V +  Q IP        ++ +    
Sbjct: 142 PDPVKDADEVVAFAEEYGVPVAIKAAFGGGGRGMKVARTIQEIPELFDSATREAVAAFGR 201

Query: 164 DQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPL 221
            +  +E+Y+D    +   V+ D   +V       +      L+          PA  +  
Sbjct: 202 GECFVERYLDKPRHVEAQVIADQHGNVVV-----AGTRDCSLQRRFQKLVEEAPAPFLTD 256

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              KE+   A    +  G  G    ++L       + +LE+N 
Sbjct: 257 AQRKEIHESAKRICKEAGYYGAGTVEYLV-GQDGLISFLEVNT 298


>gi|37527922|ref|NP_931267.1| acetyl-CoA carboxylase biotin carboxylase subunit [Photorhabdus
           luminescens subsp. laumondii TTO1]
 gi|36787358|emb|CAE16447.1| biotin carboxylase (A subunit of acetyl-CoA carboxylase) (ACC)
           [Photorhabdus luminescens subsp. laumondii TTO1]
          Length = 449

 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 78/222 (35%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H  +G   E+      +E     +         L  DK+ +   +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAEQVERSGFIFIGPKAETIRLMGDKVSAINAMKKAGVPCVPGSDG 136

Query: 113 ----VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
                          I  P +IK   GG   G+ V++ D+ +   +     ++ +  + D
Sbjct: 137 PLSDDTEKNKAFAKRIGYPVIIKASGGGGGRGMRVVRSDKDLEQSINMTRAEAKAAFNND 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E++++    +   V+ D       +A           K          PA  I  +
Sbjct: 197 MVYMEKFLENPRHIEIQVLADGQGQAIYLAERDCSMQRRHQK-----VVEEAPAPGITPE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + + +      A   IG RG    +FL+   + + +++E+N 
Sbjct: 252 MRRSIGERCANACIEIGYRGAGTFEFLY--ENGEFYFIEMNT 291


>gi|255327277|ref|ZP_05368351.1| acetyl-/propionyl-coenzyme A carboxylase alpha chain [Rothia
           mucilaginosa ATCC 25296]
 gi|255295557|gb|EET74900.1| acetyl-/propionyl-coenzyme A carboxylase alpha chain [Rothia
           mucilaginosa ATCC 25296]
          Length = 607

 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 32/220 (14%), Positives = 72/220 (32%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+           + +      +     DK+ ++ +    G P+ P    
Sbjct: 98  AVHPGYGFLSENAQFAQKCIDAGLTWIGPSPESITQLGDKVAARHIAQKVGAPLVPGTKD 157

Query: 114 NRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGDQ 165
              + D           P  +K   GG   GI V +  +SI       + ++++     +
Sbjct: 158 PVKSADEVIAFADEHGLPIAVKAAFGGGGRGIKVARDRESIVEMYESAVREATAAFGRGE 217

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             IE+++D    +    + DA  +V  ++           K             +  +  
Sbjct: 218 CFIERFLDSPRHVETQCLADAHGNVVVVSTRDCSLQRRNQK----LVEEAPAPYLSDEQN 273

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +   +    +  G +G    +FL       + +LE+N 
Sbjct: 274 ERLYEASRAILREAGYQGAGTCEFLV-GTDGTISFLEVNT 312


>gi|209517190|ref|ZP_03266035.1| carbamoyl-phosphate synthase, large subunit [Burkholderia sp. H160]
 gi|209502326|gb|EEA02337.1| carbamoyl-phosphate synthase, large subunit [Burkholderia sp. H160]
          Length = 1084

 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 26/203 (12%), Positives = 72/203 (35%), Gaps = 13/203 (6%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQHLISPPYV 129
           LE   +P   +       + D+ R ++++   G+   P+         +     I  P V
Sbjct: 655 LEANGVPIIGTSPDMIDAAEDRERFQKLLHDLGLRQPPNRTARAEDEALKLAEEIGYPLV 714

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++ + + +   + ++   ++   +L+++++ D IE     + D    
Sbjct: 715 VRPSYVLGGRAMEIVHEPRDLERYMREAVKVSNDSPVLLDRFLNDAIECDVDCISDGDAV 774

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                +   +       +S  ++  + P  +      E++R      +A+   G+    F
Sbjct: 775 FIGGVMEHIEQAGV---HSGDSACSLPPYSLSKATVAELKRQTAAMAKALNVVGLMNVQF 831

Query: 249 LFD-------PLSRKVFWLEINV 264
                          ++ LE+N 
Sbjct: 832 AIQQVPQADGSKDDIIYVLEVNP 854



 Score = 62.1 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 48/285 (16%), Positives = 93/285 (32%), Gaps = 42/285 (14%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +              DV          V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYKVILVNSNPATIMTDPNTADVTYIEPITWEVVERIIAKERPDAILP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G    +  +      +L    +    +   A   + D+ + K  ++  G+    S  
Sbjct: 89  TMGGQTALNCALDLHAHGVLAKYNVELIGASPEAIDKAEDRQKFKDAMTKIGLGSAKSGT 148

Query: 111 -------ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
                  + V             P VI+P       G  +            +    +  
Sbjct: 149 AHSMEEALAVQAKIAAETGSGGYPVVIRPSFTLGGSGGGIAYNRDEFEEICKRGLDLSPT 208

Query: 164 DQLLIEQYVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IP 220
            +LLIE+ + G  E    V+ D + + +   ++   D           +S  V PA+ + 
Sbjct: 209 RELLIEESLLGWKEYEMEVVRDKADNCIIVCSIENLDPMGIHT----GDSITVAPAQTLT 264

Query: 221 LDIYKEVQRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
              Y+ ++  +    + IG   G S   F  +P   ++  +E+N 
Sbjct: 265 DKEYQILRNASLAVLREIGVDTGGSNVQFSINPKDGRMIVIEMNP 309


>gi|170749157|ref|YP_001755417.1| carbamoyl-phosphate synthase L chain ATP-binding [Methylobacterium
           radiotolerans JCM 2831]
 gi|170655679|gb|ACB24734.1| Carbamoyl-phosphate synthase L chain ATP-binding [Methylobacterium
           radiotolerans JCM 2831]
          Length = 667

 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 73/220 (33%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H  +G   E       LE   I +      A A   DK+ SK+  ++  V   P  L 
Sbjct: 77  AVHPGYGFLSEREAFPKALEAAGIVFIGPNPGAIAAMGDKIESKKAAAAAEVSTVPGFLG 136

Query: 113 ---VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
                         I  P +IK   GG   G+ +    + +     ++ S        D+
Sbjct: 137 VIESPEHARKIADEIGYPVMIKASAGGGGKGMRIAYSGEEVAEGFARAKSEAASSFGDDR 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+++ D   +   ++GD   +V  +   +        K             +     
Sbjct: 197 VFIEKFITDPRHIEIQLIGDKHGNVVYLGERECSIQRRNQK----VIEEAPSPLLDKKTR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +++   A    +A+        +F      +  ++LE+N 
Sbjct: 253 RKMGEQAVALAKAVNYDSAGTVEF-VAGQDKSFYFLEMNT 291


>gi|92114644|ref|YP_574572.1| hypothetical protein Csal_2526 [Chromohalobacter salexigens DSM
           3043]
 gi|91797734|gb|ABE59873.1| conserved hypothetical protein [Chromohalobacter salexigens DSM
           3043]
          Length = 496

 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 36/191 (18%), Positives = 70/191 (36%), Gaps = 15/191 (7%)

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD----SQHLISPPYVIKPLKGGSS 138
              +     +K+    ++++ GVP    +L++R  +         +  P V+K   G  S
Sbjct: 279 DPQSILRCTNKVYLHALLAARGVPAPEGLLLSRDDLANLPRKIAELEFPMVLKIPDGAFS 338

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD 198
            G++ I     +  +       +    LL E      +   G++    L  +   + +  
Sbjct: 339 KGVVKINSLDELRQE-ASRLFASSALLLLQEWLPTDFDWRVGILDGEVLFASRYYMARGH 397

Query: 199 FYSYEL---KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255
           +  Y+    K  S   T   PA++P    K V + A  A + IG       D     +  
Sbjct: 398 WQIYDHSRQKVRSGGFTTHPPAEVP----KAVIKAALKATRLIGDGLYG-VD--LKQIGE 450

Query: 256 KVFWLEINVQP 266
           +V  +E+N  P
Sbjct: 451 RVVVIEVNDNP 461


>gi|281350391|gb|EFB25975.1| hypothetical protein PANDA_002843 [Ailuropoda melanoleuca]
          Length = 590

 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 41/228 (17%), Positives = 73/228 (32%), Gaps = 26/228 (11%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      L    + +      A     DK+ SK +     V   P    
Sbjct: 38  AVHPGYGFLSENKEFAKCLAAEGVIFIGPDTHAIQAMGDKIESKLLAKKAKVNTIPGFDG 97

Query: 112 LVNRFTMDS--QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGD 164
           +V            I  P +IK   GG   G+ +   D+             +SS+   D
Sbjct: 98  VVKDADEAVRIAREIGYPVMIKASAGGGGKGMRIAWDDEETRDGFRFSSQEAASSFG-DD 156

Query: 165 QLLIEQYVD-GIELT-------CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216
           +LLIE+++D    +        C V+GD   +   +   +        K           
Sbjct: 157 RLLIEKFIDNPRHIEIQVVVLLCQVLGDKHGNAVWLNERECSIQRRNQK----VVEEAPS 212

Query: 217 AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +     + +   A    +A+        +FL D      ++LE+N 
Sbjct: 213 IFLDSKTRRAMGEQAVALAKAVKYSSAGTVEFLVDSKKN-FYFLEMNT 259


>gi|295677718|ref|YP_003606242.1| acetyl-CoA carboxylase, biotin carboxylase [Burkholderia sp.
           CCGE1002]
 gi|295437561|gb|ADG16731.1| acetyl-CoA carboxylase, biotin carboxylase [Burkholderia sp.
           CCGE1002]
          Length = 454

 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 35/222 (15%), Positives = 78/222 (35%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H  +G   E+      +E     +         +  DK+ +KQ +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAERVEQSGFTFIGPRPETIRMMGDKVTAKQTMIKTGVPCVPGSEG 136

Query: 113 ----VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
                 +  +     I  P +IK   GG   G+ V+  + ++   +     ++       
Sbjct: 137 ALPDDPKEIVKIARQIGYPVIIKAAGGGGGRGMRVVHTEAALVNAVNMTREEAGRAFGNP 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
           Q+ +E++++    +   V+ D+  +   +            K          PA  I   
Sbjct: 197 QVYMEKFLENPRHIEIQVLADSFKNAVWLGERDCSMQRRHQK-----VIEEAPAPGIARR 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +   +      A + +G  G    +FL+   + + +++E+N 
Sbjct: 252 LIDRIGDRCADACKKMGYLGAGTFEFLY--ENGEFYFIEMNT 291


>gi|326317337|ref|YP_004235009.1| argininosuccinate lyase [Acidovorax avenae subsp. avenae ATCC
           19860]
 gi|323374173|gb|ADX46442.1| argininosuccinate lyase [Acidovorax avenae subsp. avenae ATCC
           19860]
          Length = 856

 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 48/221 (21%), Positives = 88/221 (39%), Gaps = 23/221 (10%)

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKP 132
           E L +P   S   A AL  DK+   +V+ + GVP   +  V   +      I  P ++KP
Sbjct: 89  ERLGLPCNPS--AAIALCRDKLLLGEVLQARGVPYPATREVR--SAADMDGIGFPAIVKP 144

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192
            +G  S+G+ ++ + + +P               + +++V+G E +     D +      
Sbjct: 145 RQGTGSIGVRLVTEARGMPDA--------QEGPWIAQRFVEGTEFSVETFSDGAGHHVLA 196

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG-CRGISRSDFLFD 251
              K   Y  +  +    + HVLPA I  D  + +      A  A+G   G + ++    
Sbjct: 197 VTRK---YLTQPPHFLELA-HVLPADISPDAARRIVETVTRALDAVGYAFGPAHTEVKLQ 252

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYA-GYSFRELLLW 291
                V  +EIN +       + P +   A G+S  +L + 
Sbjct: 253 GDIATV--IEINAR---LAGGMIPRLLEQAFGWSVADLYVR 288


>gi|56695825|ref|YP_166176.1| carbamoyl phosphate synthase large subunit [Ruegeria pomeroyi
           DSS-3]
 gi|56677562|gb|AAV94228.1| carbamoyl-phosphate synthase, large subunit [Ruegeria pomeroyi
           DSS-3]
          Length = 1122

 Score = 66.7 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 42/271 (15%), Positives = 97/271 (35%), Gaps = 36/271 (13%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAI---- 71
           AL D G++   I         D D S  L    L  +    +L     ++G +  +    
Sbjct: 614 ALTDVGYETIMINCNPETVSTDYDTSDRLYFEPLTFEHVMEILRVEQ-QNGTLHGVIVQF 672

Query: 72  -----------LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTM 118
                      LE   IP   +   A  L+ D+ R + +V+  G+    + +   +   +
Sbjct: 673 GGQTPLKLANALEQAGIPILGTTPDAIDLAEDRERFQDLVNRLGLKQPRNGIASTDAQAL 732

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IEL 177
                I  P VI+P        + +++    +   + ++   +    +L++ Y+ G +EL
Sbjct: 733 AIAEDIGFPLVIRPSYVLGGRAMEIVRDMDQLRRYIAEAVVVSGDSPVLLDSYLSGAVEL 792

Query: 178 TC-GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
               +    ++ V  I             +S  ++  + P  +  +I ++++       +
Sbjct: 793 DVDALCDGEAVHVAGI----MQHIEEAGVHSGDSACSLPPYSLSAEIIEQIKDQTNKLAR 848

Query: 237 AIGCRGISRSDFLFDPLS---RKVFWLEINV 264
           A+   G+    F          +++ +E+N 
Sbjct: 849 ALNVVGLMNVQFAIKANEQGVDEIYLIEVNP 879



 Score = 53.2 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 45/291 (15%), Positives = 95/291 (32%), Gaps = 48/291 (16%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D                V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPGLADATYIEPITPEVVAKIIEKERPDALLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G  G +  +      +L+   +    +   A  ++ D+   ++ +   G+    + +
Sbjct: 89  TMGGQTGLNTSLALEEMGVLDKFGVEMIGAKRHAIEMAEDRKLFREAMDRIGLENPKATI 148

Query: 113 VN---------------RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
           V+                  MD+   I  P +I+P       G  V              
Sbjct: 149 VSAPKNEKGKFDIRAGLAEAMDALEDIGLPAIIRPAFTLGGTGGGVAYNRDDYEHFCRSG 208

Query: 158 SSWNHGDQLLIEQYVDG-IELTCGVMGDASL-DVTEIAVPKSDFYSYELKYSSLNSTHVL 215
              +   Q+LI++ + G  E    V+ D +   +   ++   D           +S  V 
Sbjct: 209 LEASPVAQILIDESLLGWKEYEMEVVRDKADNAIIVCSIENVDPMGVHT----GDSITVA 264

Query: 216 PA-KIPLDIYKEVQRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           PA  +    Y+ ++  +    + IG   G S   +  +P   ++  +E+N 
Sbjct: 265 PALTLTDKEYQIMRNGSIAVLREIGVETGGSNVQWAVNPADGRMVVIEMNP 315


>gi|332292509|ref|YP_004431118.1| phosphoribosylglycinamide formyltransferase 2 [Krokinobacter
           diaphorus 4H-3-7-5]
 gi|332170595|gb|AEE19850.1| phosphoribosylglycinamide formyltransferase 2 [Krokinobacter
           diaphorus 4H-3-7-5]
          Length = 387

 Score = 66.7 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 42/257 (16%), Positives = 81/257 (31%), Gaps = 35/257 (13%)

Query: 28  DAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87
             G +V  +    ++  ++   KPD     +     E           E       ++ S
Sbjct: 43  ADGREVINMLDGDALDRLVEKHKPDFIVPEIEAIRTE--------RFYEYEKQGYTVIPS 94

Query: 88  ALSMD-----KMRSKQVVSSCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGSSLG 140
           A + +     K          G+                +   +  P V+KPL   S  G
Sbjct: 95  AKAANFTMNRKSIRDLAAKDLGLKTANYRYATSAETLQKAVKEVGIPCVVKPLMSSSGKG 154

Query: 141 IIVIKKDQSIPLDLLQSSSWNHGD--QLLIEQYVDGIELTCGVM----GDASLDVTEIAV 194
              IK    I      S + + GD  ++++E +V+       ++     D          
Sbjct: 155 QSTIKTPDDIQRAWEYSQAGSRGDVAEVIVESFVN-FNYEITLLTVTQRDGETLFCPPVG 213

Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
            + +   Y+  +         PA +     K  Q +A     A+G  G+   +F      
Sbjct: 214 HRQERGDYQESW--------QPATMTDAHLKTAQEMAAKVTAALGGAGLWGVEFFV--GD 263

Query: 255 RKVFWLEINVQP---GM 268
             V++ E++ +P   GM
Sbjct: 264 DGVYFSELSPRPHDTGM 280


>gi|311895201|dbj|BAJ27609.1| hypothetical protein KSE_17850 [Kitasatospora setae KM-6054]
          Length = 438

 Score = 66.7 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 38/184 (20%), Positives = 72/184 (39%), Gaps = 19/184 (10%)

Query: 91  MDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYVIKPLKGGSSLGIIVIKKDQ 148
            DK R++ V+++ G+      L         +   I  P V+KP   G+S+G++    + 
Sbjct: 118 RDKERTRTVLTAAGLRQPGFALTTDLDEARAAAARIGYPVVLKPRAMGASIGVVFAADEH 177

Query: 149 SIPLDLLQSSSWN------HGDQLLIEQYVDGIELTC--GVMGDASLDVTEIAVPKSDFY 200
            +      + S +      +   +++E+Y  G E++    V     L +       +  Y
Sbjct: 178 QLDAAFETALSASRVDPGPYRASVIVEEYAGGPEISVDGAVHKGEYLPLFL-----ARKY 232

Query: 201 SYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFW 259
           S +  Y       V  A   L     +  LA  AH+A+G   GI+ ++    P       
Sbjct: 233 SSDEPYFEEVGHIVDAADPLLADPALLAHLA-DAHRALGVEDGITHTELRLTPRG--PLI 289

Query: 260 LEIN 263
           +E+N
Sbjct: 290 VEVN 293


>gi|229521168|ref|ZP_04410588.1| ribosomal protein S6 modification enzyme [Vibrio cholerae TM
           11079-80]
 gi|229341700|gb|EEO06702.1| ribosomal protein S6 modification enzyme [Vibrio cholerae TM
           11079-80]
          Length = 483

 Score = 66.7 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 30/182 (16%), Positives = 71/182 (39%), Gaps = 10/182 (5%)

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIK 145
             +K+   +++ +  VP   S+++  F  + +      +  P V+K   G  S G++ ++
Sbjct: 275 CTNKVFLTELLETNKVPAPKSVIIRSFDPEWKTGLMEQLDFPMVLKIPDGAFSRGVVKVR 334

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYEL 204
            +Q +  +   S+ +     +L + +     +   GVM   ++   +  + +  +  Y+ 
Sbjct: 335 NEQELEKEA--STLFEKSALILAQAFMPTDFDWRIGVMNRQAIFACKYMMSRGHWQIYQH 392

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             S   +           + K V  +A  A   IG       D     +  +V+ +E+N 
Sbjct: 393 HNSGRVTAGGFETLDLKQVPKHVVDVAVKAANLIGGGLYG-VD--LKEIDGQVYVIEVND 449

Query: 265 QP 266
            P
Sbjct: 450 NP 451


>gi|159036449|ref|YP_001535702.1| carbamoyl-phosphate synthase L chain ATP-binding [Salinispora
           arenicola CNS-205]
 gi|157915284|gb|ABV96711.1| Carbamoyl-phosphate synthase L chain ATP-binding [Salinispora
           arenicola CNS-205]
          Length = 583

 Score = 66.7 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 69/220 (31%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      +    + +      A     DK+ ++ +    G P+ P    
Sbjct: 76  AVHPGYGFLSENADFAEAVIAAGLTWIGPTPQAIRDLGDKVTARHIAQRAGAPLVPGTPD 135

Query: 114 NRFTMDSQHLI----SPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSWNHGDQ 165
              + D           P  IK   GG   G+ V +  + IP        ++ +     +
Sbjct: 136 PVGSADEVLAFAVDHGLPVAIKAAFGGGGRGLKVARTMEEIPDLFESATREAVAAFGRGE 195

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             +E+Y+D    +   V+ D   +V  +            K             +     
Sbjct: 196 CFVERYLDRPRHVEAQVLADQHGNVIVVGTRDCSLQRRHQK----LVEEAPAPFLSDAQR 251

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +++   A    Q  G  G    ++L       + +LE+N 
Sbjct: 252 RQIHASAKAICQEAGYHGAGTVEYLV-GADGTISFLEVNT 290


>gi|32476512|ref|NP_869506.1| pyruvate carboxylase [Rhodopirellula baltica SH 1]
 gi|32447057|emb|CAD78963.1| pyruvate carboxylase [Rhodopirellula baltica SH 1]
          Length = 1166

 Score = 66.7 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 44/246 (17%), Positives = 92/246 (37%), Gaps = 22/246 (8%)

Query: 34  SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDK 93
           S +++D  VGL L H   D      +G   E+      L    I +      +     DK
Sbjct: 76  SYLNIDAIVGLCLKH-HIDAVHPG-YGFLSENPEFAKALTDAGILFVGPSEQSLRDLGDK 133

Query: 94  MRSKQVVSSCGVPV----CPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS 149
             ++++    GVPV      ++   +   D+   +  P ++K  KGG   G+ V+ +   
Sbjct: 134 TSARRLAEIAGVPVLGGTAQAVSSLKEATDAAEKLGYPIMLKAAKGGGGRGMRVVMEPSE 193

Query: 150 IPLDLLQSSSWNH----GDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYEL 204
           +   L  +          D++ +E++V     L   ++GD   ++  +           +
Sbjct: 194 LASSLDSAQREAKTAFGSDEVFLERFVQRARHLEVQLLGDRHGNLVHLYE-----RDCSV 248

Query: 205 KYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCR--GI---SRSDFLFDPLSRKVF 258
           +        + PA  +  ++   +   A    +A+G    G       +FL D    + +
Sbjct: 249 QRRHQKVVELAPAPNLSTEMRDAICDAALRIGRAVGKESGGYENAGTVEFLLDVDKDEFY 308

Query: 259 WLEINV 264
           ++E+N 
Sbjct: 309 FIEVNP 314


>gi|110639650|ref|YP_679861.1| carbamoyl-phosphate synthase large subunit [Cytophaga hutchinsonii
           ATCC 33406]
 gi|110282331|gb|ABG60517.1| carbamoyl-phosphate synthase large subunit [Cytophaga hutchinsonii
           ATCC 33406]
          Length = 937

 Score = 66.7 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 50/277 (18%), Positives = 99/277 (35%), Gaps = 35/277 (12%)

Query: 19  GKACASALEDAGFKVSQIDV---------------------DRSVGLVLAHLKPDLAFNV 57
           G   A +L + G +V+ I+                       +S+  +L + K D     
Sbjct: 30  GSQAARSLREEGIEVTLINSNPATIMTDKVVADNVYLLPLEKKSIIKILENHKIDAVLPT 89

Query: 58  LHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
           + G    +  ++     + +   +      I A   + D+ + +  +   GV VC     
Sbjct: 90  MGGQTALNLAMECDKAGVWKKFGVRMIGVDINAIETTEDREKFRLKMIEIGVGVCKGATA 149

Query: 114 NRFTM--DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
             F    +    I  P VI+P       G   +         L +    +   ++L+EQ 
Sbjct: 150 TSFLQGKEIAQEIGFPLVIRPSFTLGGTGGGFVHTADKFDEALTKGLHASPTHEVLVEQS 209

Query: 172 VDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEVQ 228
           + G  E    ++ D+  ++  I   ++    ++       +S  V PA  +P  IY+E++
Sbjct: 210 ILGWKEYELEILRDSIGNMIIICSIEN----FDPMGIHTGDSITVAPAMTLPDTIYQEMR 265

Query: 229 RLAFLAHQAIG-CRGISRSDFLFDPLSRKVFWLEINV 264
             +    +AIG   G     F   P +  +  +EIN 
Sbjct: 266 DQSIKMMKAIGNFAGGCNVQFSVCPDTDHIIGIEINP 302



 Score = 64.4 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/200 (14%), Positives = 75/200 (37%), Gaps = 16/200 (8%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ--HLISPPYV 129
           LE   I    +   +  L+ D+ R   ++    +P     ++            ++ P +
Sbjct: 650 LERYGIKIIGTDFQSLDLAEDRGRFSSLLKEINIPYPEFGVIENADEAVAISKKLNFPLL 709

Query: 130 IKPLK--GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG--IELTCGVMGDA 185
           ++P    GG S+ I++   +Q +   ++     + G+Q+L++ +++         +    
Sbjct: 710 VRPSYVLGGQSMKIVI--NEQELEQHVVNLLKDHPGNQVLVDHFLENAIEAEADAICDGE 767

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGIS 244
           ++ +  I         +       +S  VLP   +  D+ ++++        A+   G+ 
Sbjct: 768 NVHIIGIMEHIEPAGIHS-----GDSHSVLPPFDLSDDVIRQIEEHTKKIAIALKTVGLI 822

Query: 245 RSDFLFDPLSRKVFWLEINV 264
              F     +  V+ +E N 
Sbjct: 823 NIQFAI--KNEIVYIIEANP 840


>gi|299534629|ref|ZP_07047961.1| pyruvate carboxylase [Lysinibacillus fusiformis ZC1]
 gi|298730002|gb|EFI70545.1| pyruvate carboxylase [Lysinibacillus fusiformis ZC1]
          Length = 1144

 Score = 66.3 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 33/243 (13%), Positives = 81/243 (33%), Gaps = 21/243 (8%)

Query: 35  QIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSM 91
            ID    +  ++A  K D   + +H  +G   E+       E   I +         +  
Sbjct: 59  PIDAYLDIEGIIAIAK-DADVDAIHPGYGFLSENVEFARRCEEEGIVFIGPTSQHLDMFG 117

Query: 92  DKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147
           DK++++    +  +PV P     +               P +IK   GG   G+ ++   
Sbjct: 118 DKVKARSQAIAAEIPVIPGTDGPVADLAEVETFASNYGYPVMIKAALGGGGRGMRLVHTP 177

Query: 148 QSI----PLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSY 202
           + +         ++ +    D++ +E+  +    +   ++GD   ++  +          
Sbjct: 178 EDLASSYERAKSEAKAAFGSDEVYVEKAIIKPKHIEVQIIGDKHGNIVHLYERDCSIQRR 237

Query: 203 ELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
             K        + P+  I  ++   +   A    + +        +FL        +++E
Sbjct: 238 HQK-----VVEIAPSHSISQELRNRICDAAVKLMKNVSYINAGTVEFLV--AGDDFYFIE 290

Query: 262 INV 264
           +N 
Sbjct: 291 VNP 293


>gi|260597252|ref|YP_003209823.1| ribosomal protein S6 modification protein [Cronobacter turicensis
           z3032]
 gi|260216429|emb|CBA29529.1| Ribosomal protein S6 modification protein [Cronobacter turicensis
           z3032]
          Length = 300

 Score = 66.3 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 60/289 (20%), Positives = 114/289 (39%), Gaps = 45/289 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-----DRSVGLVLAHLK----- 50
           +A+L       R+ +L S K    A    G +V  +D        +      H K     
Sbjct: 3   IAILS------RDGTLYSCKRLREAATRRGHQVEILDPLSCYMTINPAASCVHYKGRQLP 56

Query: 51  -PDLAFNVLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV 105
             D     + G+    +G   L Q   E+L   Y  +  +A   + DK+RS Q+++  G+
Sbjct: 57  HFDAVIPRI-GSAITFYGTAALRQ--FEMLG-SYPLNESVAITRARDKLRSLQLLARQGI 112

Query: 106 --PVCPSILVNRFTMDSQHLISP-PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
             PV         T D   ++   P V+K ++G   +G+++ +  Q+     +  +    
Sbjct: 113 DLPVTGIAHSPDDTSDLIDMVGGAPLVVKLVEGTQGIGVVLAETRQAAES--VIDAFRGL 170

Query: 163 GDQLLIEQYVD---GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI 219
              +L+++Y+    G ++ C V+GD  +   E    + DF S   +           A+I
Sbjct: 171 NAHILVQEYIKEARGRDIRCLVVGDRVVAAIERQAKEGDFRSNLHRGGV--------ARI 222

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268
             +I +  + +A  A   +G   ++  D       R    +E+N  PG+
Sbjct: 223 -AEISERERDIAIKAAATLGL-DVAGVD--ILRADRGPLVMEVNASPGL 267


>gi|254819523|ref|ZP_05224524.1| AccA3 [Mycobacterium intracellulare ATCC 13950]
          Length = 600

 Score = 66.3 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 38/223 (17%), Positives = 76/223 (34%), Gaps = 21/223 (9%)

Query: 56  NVLHGNFG---EDGLV-QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           N +H  +G   E+    QA+L+   + +      +     DK+ ++ + +    P+ P  
Sbjct: 83  NAVHPGYGFLSENADFAQAVLD-AGLIWIGPSPQSIRDLGDKVTARHIAARAQAPLVPGT 141

Query: 112 LVNRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSWNHG 163
                  D           P  IK   GG   G+ V +  + IP      + ++ +    
Sbjct: 142 PDPVKDADEVVAFAKEYGVPIAIKAAFGGGGRGMKVARTIEEIPHLYESAVREAVAAFGR 201

Query: 164 DQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPL 221
            +  +E+Y+D    +   V+ D   +V       +      L+          PA  +  
Sbjct: 202 GECFVERYLDKPRHVEAQVIADQHGNVIV-----AGTRDCSLQRRFQKLVEEAPAPFLTD 256

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              KE+   A    +     G    ++L       + +LE+N 
Sbjct: 257 AQRKEIHESAKRICKEAHYYGAGTVEYLV-GQDGLISFLEVNT 298


>gi|113968890|ref|YP_732683.1| alpha-L-glutamate ligase [Shewanella sp. MR-4]
 gi|114048972|ref|YP_739522.1| alpha-L-glutamate ligase [Shewanella sp. MR-7]
 gi|123029984|sp|Q0HMU1|RIMK1_SHESM RecName: Full=Ribosomal protein S6 modification protein 1
 gi|123131042|sp|Q0HQZ0|RIMK2_SHESR RecName: Full=Ribosomal protein S6 modification protein 2
 gi|113883574|gb|ABI37626.1| alpha-L-glutamate ligases, RimK family [Shewanella sp. MR-4]
 gi|113890414|gb|ABI44465.1| alpha-L-glutamate ligases, RimK family [Shewanella sp. MR-7]
          Length = 301

 Score = 66.3 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 53/270 (19%), Positives = 106/270 (39%), Gaps = 33/270 (12%)

Query: 16  LSSGKACASALEDAGFKVSQID----------VDRSVGLVLAHL-KPDLAFNVLHGNFGE 64
           L S +   +A E  G +   I+          +  S+      L   D     +H +   
Sbjct: 12  LYSTRRLVAACESRGHEAVVINTLNCYMNINSIKPSIHYQGQELTGFDAIIPRIHASVTF 71

Query: 65  DGL-VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV--PVCPSILVNRFTMDSQ 121
            G  V    E++ + +  +  ++ A S DK+R+ Q++S  G+  PV           D  
Sbjct: 72  YGCAVVRQFEMMGV-FAANDSISIARSRDKLRALQLLSRKGIGMPVTGFANKPNDIPDLI 130

Query: 122 HLISP-PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD---GIEL 177
           +++   P VIK L+G   +G+++ +   +     +  +       +++++Y+    G ++
Sbjct: 131 NMVGGAPLVIKLLEGTQGIGVVLAETKTAAES--VIEAFLGLKANIMVQEYIKESNGSDI 188

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
            C V+GD  +   +   P+ DF S            + P +         +++A  A +A
Sbjct: 189 RCFVVGDKVVASMKRQGPEGDFRSNLHLGGCGEKVKITPEE---------RKMAVAAVKA 239

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPG 267
           +G       D      +R    LE+N  PG
Sbjct: 240 MGLVVAG-VD--ILRSNRGPLILEVNSAPG 266


>gi|302878823|ref|YP_003847387.1| cyanophycin synthetase [Gallionella capsiferriformans ES-2]
 gi|302581612|gb|ADL55623.1| cyanophycin synthetase [Gallionella capsiferriformans ES-2]
          Length = 720

 Score = 66.3 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 25/101 (24%), Positives = 50/101 (49%), Gaps = 5/101 (4%)

Query: 88  ALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIV-I 144
           ++S DK  +K ++S+CGVPV    +V+      ++   I  P V+KP  G    G+   +
Sbjct: 210 SISRDKDLTKTLLSACGVPVPEGRIVDNPADAWEAAEDIGLPVVVKPTDGNHGRGVSTEL 269

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
              + +    + + +   G ++++E+Y+ G E    V+G  
Sbjct: 270 MTQEEVEAAFVLADA--QGSEVIVERYIRGNEHRLLVVGGR 308


>gi|145256972|ref|XP_001401577.1| pyruvate carboxylase [Aspergillus niger CBS 513.88]
 gi|134058487|emb|CAL00696.1| pyruvate carboxylase pyc-Aspergillus niger
          Length = 1192

 Score = 66.3 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 83/221 (37%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
           ++H  +G   E+      +E   + +            DK+ ++Q+   C VPV P    
Sbjct: 119 LIHPGYGFLSENAEFARKVEQSGMVFVGPTPQTIESLGDKVSARQLAIRCDVPVVPGTPG 178

Query: 113 -VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGDQ 165
            V R+            P +IK   GG   G+ V++    +         ++ S      
Sbjct: 179 PVERYEEVKAFTDTYGFPIIIKAAFGGGGRGMRVVRDQAELRDSFERATSEARSAFGNGT 238

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDI 223
           + +E+++D    +   ++GD   +V              ++        + PA  +P D+
Sbjct: 239 VFVERFLDRPKHIEVQLLGDNHGNVV-----HLFERDCSVQRRHQKVVEIAPAKDLPADV 293

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              +   A    +++  R    ++FL D  +R  +++EIN 
Sbjct: 294 RDRILADAVKLAKSVNYRNAGTAEFLVDQQNR-YYFIEINP 333


>gi|34557962|ref|NP_907777.1| phosphoribosylglycinamide formyltransferase 2 [Wolinella
           succinogenes DSM 1740]
 gi|81653439|sp|Q7M8I0|PURT_WOLSU RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|34483680|emb|CAE10677.1| PHOSPHORIBOSYLGLYCINAMIDE FORMYLTRANSFERASE-FORMATE DEPENDENT
           [Wolinella succinogenes]
          Length = 387

 Score = 66.3 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 42/244 (17%), Positives = 84/244 (34%), Gaps = 33/244 (13%)

Query: 39  DRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILEL--LEIPYTHSGILASALSMDKMRS 96
             ++  ++    P      +     E   ++A+LE          S    S     K   
Sbjct: 63  KEALLDLIQKENPTYILPEV-----EAISLEALLEAEEKGFCVIPSAKAVSLTMNRKGIR 117

Query: 97  KQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154
                  GV       V        +   I  P VIKP+   S  G  V +  + I    
Sbjct: 118 TFAAEEVGVKTSQYRFVKTLDELRSAAEEIGYPCVIKPVMSSSGHGQSVCRMAEEIEACF 177

Query: 155 LQS-SSWNHGDQLLIEQYVD-GIELTCGVMGDASL-----DVTEIAVPKSDFYSYELKYS 207
            ++  +     +L++E+++    E+T   + +         +  I       +S++    
Sbjct: 178 EEAKEARGDSSELIVEEFIPFDYEITLLTLNNGKKITFCDPIGHIQKGGDYIFSWQ---- 233

Query: 208 SLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP- 266
                   PA++   + K+ Q++A     A+G RGI   +        +V++ E++ +P 
Sbjct: 234 --------PAQMKKSVLKKAQKIARDVVSALGGRGIFGVELFIKK--NEVYFSEVSPRPH 283

Query: 267 --GM 268
             GM
Sbjct: 284 DTGM 287


>gi|51701713|sp|Q9HES8|PYC_ASPNG RecName: Full=Pyruvate carboxylase; AltName: Full=Pyruvic
           carboxylase; Short=PCB
 gi|12044690|emb|CAC19838.1| pyruvate carboxylase [Aspergillus niger]
          Length = 1192

 Score = 66.3 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 83/221 (37%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
           ++H  +G   E+      +E   + +            DK+ ++Q+   C VPV P    
Sbjct: 119 LIHPGYGFLSENAEFARKVEQSGMVFVGPTPQTIESLGDKVSARQLAIRCDVPVVPGTPG 178

Query: 113 -VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGDQ 165
            V R+            P +IK   GG   G+ V++    +         ++ S      
Sbjct: 179 PVERYEEVKAFTDTYGFPIIIKAAFGGGGRGMRVVRDQAELRDSFERATSEARSAFGNGT 238

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDI 223
           + +E+++D    +   ++GD   +V              ++        + PA  +P D+
Sbjct: 239 VFVERFLDRPKHIEVQLLGDNHGNVV-----HLFERDCSVQRRHQKVVEIAPAKDLPADV 293

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              +   A    +++  R    ++FL D  +R  +++EIN 
Sbjct: 294 RDRILADAVKLAKSVNYRNAGTAEFLVDQQNR-YYFIEINP 333


>gi|227358394|ref|ZP_03842734.1| bifunctional acetyl-/propionyl-coenzyme A carboxylase alpha chain
           [Proteus mirabilis ATCC 29906]
 gi|227161430|gb|EEI46474.1| bifunctional acetyl-/propionyl-coenzyme A carboxylase alpha chain
           [Proteus mirabilis ATCC 29906]
          Length = 584

 Score = 66.3 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 30/220 (13%), Positives = 72/220 (32%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP----VCP 109
           ++H  +G   E       ++   + +         +  DK++++++  S G P       
Sbjct: 89  MIHPGYGFLSERADFAKAVQQAGLLWIGPDPQTIEVLGDKVQARKIAQSVGAPLVNGTAD 148

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL----DLLQSSSWNHGDQ 165
            +   +  +D       P  IK   GG   G+ +      I       + ++ +     +
Sbjct: 149 PVSDAKEVLDFAKQYGLPIAIKAAFGGGGRGLKIAHHMAEIEELYHSAVREAVTAFGRGE 208

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             +EQ++D    +   ++ D   +V  +            K             +  +  
Sbjct: 209 CYVEQFLDKPRHIEAQIIADKLGNVVVVGTRDCSLQRRNQKLI----EEAPAPYLTDEQR 264

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + + + A       G  G    +FL    +  + +LE+N 
Sbjct: 265 QRIHQSAKDICAKAGYIGAGTVEFLLSA-NGTISFLEVNT 303


>gi|225562373|gb|EEH10652.1| pyruvate carboxylase [Ajellomyces capsulatus G186AR]
          Length = 1198

 Score = 66.3 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 91/222 (40%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
           ++H  +G   E+      +E   + +            DK+ ++++   CGVPV P    
Sbjct: 124 LIHPGYGFLSENAEFARNVEKAGLVFVGPTPDTIDALGDKVSARRLAIKCGVPVVPGTPG 183

Query: 113 -VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS-----SSWNHGD 164
            V RF            P +IK   GG   G+ V+++ +++     ++     S++    
Sbjct: 184 PVERFEEVKAFTDQYGFPIIIKAAFGGGGRGMRVVREQETLQDAFERATSEAKSAFG-NG 242

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLD 222
            + +E+++D    +   ++GD   ++  +           ++        V PA  +P+D
Sbjct: 243 TVFVERFLDKPKHIEVQLLGDNHGNIVHLYE-----RDCSVQRRHQKVVEVAPAKDLPVD 297

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +   +   A    +++  R    ++FL D  +R  +++EIN 
Sbjct: 298 VRDSILADAVKLAKSVNYRNAGTAEFLVDQQNR-YYFIEINP 338


>gi|189203165|ref|XP_001937918.1| carbamoyl-phosphate synthase arginine-specific large chain
           [Pyrenophora tritici-repentis Pt-1C-BFP]
 gi|187985017|gb|EDU50505.1| carbamoyl-phosphate synthase arginine-specific large chain
           [Pyrenophora tritici-repentis Pt-1C-BFP]
          Length = 1171

 Score = 66.3 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 53/291 (18%), Positives = 102/291 (35%), Gaps = 41/291 (14%)

Query: 6   GGIS----SEREVSLSSGKACASALEDAGF--------------------KVSQIDVDRS 41
           GG+S     E + S   G     AL++AG                     ++  + V   
Sbjct: 99  GGLSIGQAGEFDYS---GSQALKALKEAGVKSVLLNPNIATIQTSHVLADEIYYLPVTPE 155

Query: 42  VGL-VLAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRS 96
               V+   +PD  F    G    +  VQ     I E   +    + +     S D+   
Sbjct: 156 YAEYVIQKERPDGIFLSFGGQTALNLGVQMDAKGIFEKYNVKVLGTSVQTLKTSEDRDLF 215

Query: 97  KQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154
            + +    +P+  SI V+     +D+   +  P +++       LG       + +    
Sbjct: 216 ARALDEINIPIAKSIAVSTVDEALDAAEKVGYPIIVRAAYALGGLGSGFANNPEELK--N 273

Query: 155 LQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTH 213
           L + S     Q+L+E+ + G  E    V+ DAS +   I V   + +   L   + +S  
Sbjct: 274 LSARSLTLSPQILVEKSLKGWKEAEYEVVRDASDN--CITVCNMENFD-PLGVHTGDSIV 330

Query: 214 VLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
           V P++    + Y  ++  +    + +G  G     +   P       +E+N
Sbjct: 331 VSPSQTFSDEEYHMLRSASIKIVRHLGVVGECNVQYCLQPDGLDYRVIEVN 381



 Score = 53.6 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 25/168 (14%), Positives = 62/168 (36%), Gaps = 12/168 (7%)

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--QHLISPPYVIKPLKGGSS 138
            +       + D+ +   ++ S GV       +  +       + +  P +++P    S 
Sbjct: 738 GTDPRDIDKAEDRHKFSSILDSIGVDQPAWKELTSYDEAKKFANSVGYPVLVRPSYVLSG 797

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL----TCGVMGDASLDVTEIAV 194
             + VI+ ++ +   LL +S+ +    ++I Q++DG +          G   +      V
Sbjct: 798 AAMTVIRGEEELKEKLLAASNVSPDHPVVITQFIDGAQEIDCDAVASNGSVLVHAISEHV 857

Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
             +  +S +       +  + P  +   I + V+ +A    +A    G
Sbjct: 858 ENAGVHSGDA------TLVLPPVNLDKRIQERVKEIADKVAKAWNITG 899


>gi|167840724|ref|ZP_02467408.1| acetyl-/propionyl-coenzyme A carboxylase alpha chain protein
           [Burkholderia thailandensis MSMB43]
          Length = 674

 Score = 66.3 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 77/220 (35%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      +    + +      +     DK R+++ +++ G+PV P    
Sbjct: 81  AIHPGYGFLSENAAFARRIADAGLVFVGPRADSIDAMGDKARARRRMAAAGIPVVPGYDG 140

Query: 114 NR----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
           +       +     I  P ++K   GG   G+  +    ++P  L  + S         +
Sbjct: 141 DDQGEARILSEAERIGCPVMLKAAAGGGGRGMRRVDTRDALPAALKLAVSEARHAFGDGR 200

Query: 166 LLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           +++E+  ++   +   +  DA   V  +            K             +   + 
Sbjct: 201 MIVERAVIEPRHVEVQIFADAHGHVVHLGERDCSVQRRHQKI----VEEAPSPVVDAALR 256

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +   A  A + IG  G    +FL D   R  +++E+N 
Sbjct: 257 ARLGATAVAAAREIGYVGAGTVEFLLDREGR-FYFMEMNT 295


>gi|149913195|ref|ZP_01901729.1| Carbamoyl-phosphate synthase L chain, ATP-binding protein
           [Roseobacter sp. AzwK-3b]
 gi|149813601|gb|EDM73427.1| Carbamoyl-phosphate synthase L chain, ATP-binding protein
           [Roseobacter sp. AzwK-3b]
          Length = 460

 Score = 66.3 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 76/220 (34%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E       LE   I Y            DK+ ++Q   + G PV P    
Sbjct: 78  AVHPGYGFLSESPRFARALEEAGITYVGPSADTIERMGDKVAARQAAEAAGTPVVPGSKG 137

Query: 114 NRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGDQ 165
              T+D        +  P +IK   GG   GI +   +  +    P    ++ +      
Sbjct: 138 RIETLDDAVATAAEVGYPVMIKAAAGGGGRGIRIAANEDELRKLAPQAQSEAQAAFGDGG 197

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           L +E+ + D   +   ++GD +         +        K             +     
Sbjct: 198 LYLERALRDPRHIEVQILGDGT-RAVHCFERECSIQRRRQK----VWEEAGAVCLDEPTR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +++   A    +A+  +G    +FL++  S + F++E+N 
Sbjct: 253 QQLCTSAVAMAEAVSYKGAGTLEFLYEEASNQFFFIEMNT 292


>gi|148553362|ref|YP_001260944.1| carbamoyl phosphate synthase large subunit [Sphingomonas wittichii
           RW1]
 gi|148498552|gb|ABQ66806.1| carbamoyl-phosphate synthase large subunit [Sphingomonas wittichii
           RW1]
          Length = 1110

 Score = 66.3 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 50/285 (17%), Positives = 105/285 (36%), Gaps = 37/285 (12%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAI---- 71
           AL DAG++   +         D D S  L    L  +    +LH    + G ++ +    
Sbjct: 619 ALADAGYETIMVNCNPETVSTDYDTSDRLYFEPLTAEDVLEILHVEQSK-GTLKGVIVQF 677

Query: 72  -----------LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTM 118
                      LE   IP   +   A  L+ D+ R   +V   G+    + +       +
Sbjct: 678 GGQTPLKLAQELEDAGIPILGTSPDAIDLAEDRERFAALVGELGLSQPRNGIARSREEAL 737

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIEL 177
                +  P +++P        + +++    +   +  +   +    +LI+QY+ D IE+
Sbjct: 738 AVAERVGYPVLMRPSYVLGGRAMEIVEDPSQLDQYISTAVQVSGDSPVLIDQYLRDAIEV 797

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
               + D    V    +   +       +S  ++  + P  +P +I  E++R      +A
Sbjct: 798 DVDAICDGDDVVVAGVLQHIEEAGV---HSGDSACTLPPYSLPKEIIAEIERQTDALARA 854

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAG 282
           +  RG+   +  +     +V+ +E+N +   T     P +A   G
Sbjct: 855 LKVRGL--MNVQYAVKDGEVYLIEVNPRASRT----VPFVAKAIG 893



 Score = 57.4 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 94/278 (33%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL + G+++  ++ + +                     V  ++   +PD    
Sbjct: 29  SGTQACKALREEGYRIVLVNSNPATIMTDPEMADATYVEPITPEIVARIIEKERPDAVLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +       LE        +   A   + D+++ +Q +   G+    S +
Sbjct: 89  TMGGQTALNTALALFNDGTLEKYGCQMIGADAEAIDKAEDRLKFRQAMDKIGLESPRSDV 148

Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +      +    +  P +I+P       G  +          +      +   ++LIE+
Sbjct: 149 AHTLDEALRVLDYVGLPAIIRPSFTMGGTGGGIAYNKDEFVKIVTGGLDASPTTEVLIEE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPA-KIPLDIYKEV 227
            V G  E    V+ D + +   I   ++ D           +S  V PA  +    Y+ +
Sbjct: 209 SVLGWKEYEMEVVRDRADNCIIICSIENVDPMGVHT----GDSITVAPALTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P   ++  +E+N 
Sbjct: 265 RNASIAVLREIGVETGGSNVQFAVNPADGRLVVIEMNP 302


>gi|74313785|ref|YP_312204.1| acetyl-CoA carboxylase biotin carboxylase subunit [Shigella sonnei
           Ss046]
 gi|73857262|gb|AAZ89969.1| acetyl CoA carboxylase, biotin carboxylase subunit [Shigella sonnei
           Ss046]
          Length = 449

 Score = 66.3 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 80/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         L  DK+ +   +   GVP  P    
Sbjct: 77  AIHPGYGFLSENANFAEQVERSGFIFIGPKAETIRLMGDKVSAIAAMKKAGVPCVPGSDG 136

Query: 112 -LVNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
            L +    +      I  P +IK   GG   G+ V++ D  +   +     ++ +    D
Sbjct: 137 PLGDDMDKNRAIAKRIGYPVIIKASGGGGGRGMRVVRGDAELAQSISMTRAEAKAAFSND 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+Y++    +   V+ D   +   +A           K          PA  I  +
Sbjct: 197 MVYMEKYLENPRHVEIQVLADGRGNAIYLAERDCSMQRRHQK-----VVEEAPAPGITPE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + + +      A   IG RG    +FLF   + + +++E+N 
Sbjct: 252 LRRYIGERCAKACVDIGYRGAGTFEFLF--ENGEFYFIEMNT 291


>gi|163845930|ref|YP_001633974.1| lysine biosynthesis enzyme LysX [Chloroflexus aurantiacus J-10-fl]
 gi|222523653|ref|YP_002568123.1| lysine biosynthesis enzyme LysX [Chloroflexus sp. Y-400-fl]
 gi|163667219|gb|ABY33585.1| lysine biosynthesis enzyme LysX [Chloroflexus aurantiacus J-10-fl]
 gi|222447532|gb|ACM51798.1| lysine biosynthesis enzyme LysX [Chloroflexus sp. Y-400-fl]
          Length = 282

 Score = 66.3 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 48/279 (17%), Positives = 90/279 (32%), Gaps = 47/279 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL--AHLKPDLAFNVL 58
           +AVL   I +E        K     LE  G    ++D DR     L       D+     
Sbjct: 3   IAVLCSRIRAEE-------KLLFQELERRGLDYVKVD-DREQIFDLHTTTYPFDVVL--- 51

Query: 59  HGNFGEDGLVQ--------AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
                 +  +Q         I     +P  ++    +    DK  + Q +   GVP    
Sbjct: 52  ------ERCIQHSRALYMLKIFNDAGVPTVNT-YHVALTCGDKFLTTQALIHAGVPTPRC 104

Query: 111 ILV--NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ--L 166
           +L       +++   +  P V+KP+ G     +  I    +    L       +      
Sbjct: 105 LLAFTPESALEAMEQLGYPVVLKPVIGSWGRMVSKINDRDAAEAILEHRDVLGNYQHSIF 164

Query: 167 LIEQYV--DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
            I+QY+   G ++   V+GD  +       P      +    +        P      + 
Sbjct: 165 YIQQYIHKPGRDIRSFVIGDECIAAIYRTSPH-----WITNTARGGVATNCP------VT 213

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            E+  ++  A  A+G   ++  D L +    ++   E+N
Sbjct: 214 PELADISVRAAHAVGGGVVA-ID-LLETPEGELLVNEVN 250


>gi|167042855|gb|ABZ07572.1| putative D-ala D-ala ligase [uncultured marine microorganism
           HF4000_ANIW137J11]
          Length = 457

 Score = 66.3 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 38/197 (19%), Positives = 77/197 (39%), Gaps = 35/197 (17%)

Query: 91  MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ-----------HLISPPYVIKPLKGGSSL 139
            DK+R ++V++  G+P     LV       +             ++ P V+KP +  +S 
Sbjct: 145 RDKLRCREVLADAGLPQPAWRLVADGDDADEVARELAAGAAPSGVAFPCVVKPRQLAASQ 204

Query: 140 GIIVIKKDQSIPLDLLQ--------SSSWNHGDQLLIEQYVDGIELTCGVM-GDASLDVT 190
           G+I           L +        + +   G+ LL+E+Y+ G E+    +  D ++++ 
Sbjct: 205 GVIRTDDPAQFVAALGRLRALLAQPAVARVAGEGLLLEEYIPGPEVAVEALARDGAVEIL 264

Query: 191 EI----AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR-GISR 245
           EI     + +  F+  E        T+V PA +     + V      A  A+G   G   
Sbjct: 265 EIFAKPDIGEGPFFPEE--------TYVAPAGLDEAQRELVAGTTVRAAAALGLSEGAIH 316

Query: 246 SDFLFDPLSRKVFWLEI 262
           ++        + + ++I
Sbjct: 317 AELRLH--DGEAWVIDI 331


>gi|332286486|ref|YP_004418397.1| carbamoyl-phosphate synthase, putative [Pusillimonas sp. T7-7]
 gi|330430439|gb|AEC21773.1| carbamoyl-phosphate synthase, putative [Pusillimonas sp. T7-7]
          Length = 456

 Score = 66.3 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 34/221 (15%), Positives = 76/221 (34%), Gaps = 19/221 (8%)

Query: 58  LHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS---I 111
           LH  +G   E       +E   I +      +     DK R++ +  +  VPV P     
Sbjct: 77  LHPGYGFLAESAEFARQVEDAGIVWVGPTPASIESMGDKERARSLAEAACVPVLPGSIRF 136

Query: 112 LV--NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ----SSSWNHGDQ 165
           +V      ++    +  P ++K   GG  +G+  + +++ +   +      +        
Sbjct: 137 VVGDTARVLEEAARVGFPLLVKAAAGGGGIGMRRVDREEDLLSVVAATQHMAERSFGDGT 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           + +E+Y+     +   V G    +               ++          PA  IP+ +
Sbjct: 197 VYLERYISLARHVEVQVFGFGDGNAI-----HLHERDCSVQRRFQKVIEESPAPGIPVAV 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +   +    +    R     +F+ D  +   F+LE+N 
Sbjct: 252 RERMLHASLSLCRQGHYRSAGTIEFVMDAKTFDFFFLEMNT 292


>gi|312795108|ref|YP_004028030.1| biotin carboxylase [Burkholderia rhizoxinica HKI 454]
 gi|312166883|emb|CBW73886.1| Biotin carboxylase (EC 6.3.4.14) [Burkholderia rhizoxinica HKI 454]
          Length = 457

 Score = 66.3 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 35/222 (15%), Positives = 77/222 (34%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         L  DK+ +KQ +   GVP  P    
Sbjct: 79  AIHPGYGFLSENADFAERVEQSGFTFIGPRPETIRLMGDKVSAKQTMIKTGVPCVPGSDG 138

Query: 112 ---LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
                 +  +     +  P +IK   GG   G+ V+  + ++   +     ++       
Sbjct: 139 ALPDDPKEIVKIARSVGYPVIIKAAGGGGGRGMRVVHTEAALVNAVNMTREEAGRAFGNP 198

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
           Q+ +E++++    +   V+ D+      +            K          PA  I   
Sbjct: 199 QVYMEKFLENPRHIEIQVLADSFKSAVWLGERDCSMQRRHQK-----VIEEAPAPHIARR 253

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +   +      A + +G  G    +FL+   + + +++E+N 
Sbjct: 254 LIDRIGDRCAEACKKMGYLGAGTFEFLY--ENGEFYFIEMNT 293


>gi|290476766|ref|YP_003469677.1| acetyl CoA carboxylase, biotin carboxylase subunit [Xenorhabdus
           bovienii SS-2004]
 gi|289176110|emb|CBJ82915.1| acetyl CoA carboxylase, biotin carboxylase subunit [Xenorhabdus
           bovienii SS-2004]
          Length = 449

 Score = 66.3 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 79/222 (35%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         L  DK+ +   + + GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAEQVERSGFVFIGPKAETIRLMGDKVSAINAMKTAGVPCVPGSDG 136

Query: 112 ---LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
                          I  P +IK   GG   G+ V++ D+ +   +     ++ +  + D
Sbjct: 137 SLGNDTEKNKAIAKRIGYPVIIKASGGGGGRGMRVVRSDKDLEQSIAMTRAEAKAAFNND 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E++++    +   V+ D       +A           K          PA  I  +
Sbjct: 197 MVYMEKFLENPRHVEIQVLADGQGHALYLAERDCSMQRRHQK-----VVEEAPAPGISAE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + + +      A   IG RG    +FL+   + + +++E+N 
Sbjct: 252 LRRTIGERCANACIEIGYRGAGTFEFLY--ENGEFYFIEMNT 291


>gi|171696272|ref|XP_001913060.1| hypothetical protein [Podospora anserina S mat+]
 gi|170948378|emb|CAP60542.1| unnamed protein product [Podospora anserina S mat+]
          Length = 1117

 Score = 66.3 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 86/221 (38%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
           ++H  +G   E+      +E   + +            DK+ ++++  +  VPV P    
Sbjct: 41  MIHPGYGFLSENAEFARKVEAAGLIFIGPSPDVIDALGDKVSARKIAIAANVPVVPGTEG 100

Query: 112 LVNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGDQ 165
            V +F            P +IK   GG   G+ V++++ S+         ++ S      
Sbjct: 101 AVEKFEEVKAFTDKYGFPIIIKAAYGGGGRGMRVVREEASLKESFERATSEAKSAFGNGT 160

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDI 223
           + +E+++D    +   ++GD   ++  +           ++        + PA  +P  +
Sbjct: 161 VFVERFLDKPKHIEVQLLGDNHGNIVHLYE-----RDCSVQRRHQKVVEIAPAKDLPASV 215

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              +   A    +++  R    ++FL D  +R  +++EIN 
Sbjct: 216 RDAILNDAVRLAKSVNYRNAGTAEFLVDQQNR-YYFIEINP 255


>gi|13473978|ref|NP_105546.1| hypothetical protein mlr4745 [Mesorhizobium loti MAFF303099]
 gi|14024729|dbj|BAB51332.1| mlr4745 [Mesorhizobium loti MAFF303099]
          Length = 376

 Score = 66.3 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 47/257 (18%), Positives = 86/257 (33%), Gaps = 32/257 (12%)

Query: 39  DRSVGLVLAHLKPDLAFNVLHG-NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSK 97
           D +  L     +  L + +  G  +   G   A+  L  +    +     AL  DK RS 
Sbjct: 89  DAAEVLEAEDGQSTLVWTLTDGIAYFRGGAAPALARLNGLRTVGADDSLFALCQDKFRSG 148

Query: 98  QVVSSCGVPVCPSILVNRFTMDSQHLISPP-----YVIKPLKGGSSLGIIVIKKDQSIPL 152
            V+ + G+P   + L      D + L+ PP     + +KP + G+ +GI    +   +  
Sbjct: 149 AVLGALGLPAPQAGLAR----DGKWLVEPPASAAGWFVKPNRLGAKIGIWPDSRCHELGH 204

Query: 153 DLLQSSS--WNHGDQLLIEQYVDGIELTCGVMG---DASLDVTEIAVPKSDFY------- 200
            L  S      + D ++++ YV G       +G      ++   IA   S          
Sbjct: 205 ALELSRRVFAAYRDDVVVQPYVAGRNARASFLGLTPQTGVEALGIAFVDSGADFQTMADS 264

Query: 201 ---------SYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
                    + +          V  A +       ++ +A      +G R +   D    
Sbjct: 265 MALYGETGEAVKAAGLYAEPELVAVADVQPGADARIRAIAGRLIGGLGLRDVFSIDLRV- 323

Query: 252 PLSRKVFWLEINVQPGM 268
                V  +E  V PG+
Sbjct: 324 EADDTVHLIEFEVCPGL 340


>gi|229031518|ref|ZP_04187518.1| Carbamoyl-phosphate synthase large chain [Bacillus cereus AH1271]
 gi|228729807|gb|EEL80787.1| Carbamoyl-phosphate synthase large chain [Bacillus cereus AH1271]
          Length = 1018

 Score = 66.3 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 26/221 (11%), Positives = 80/221 (36%), Gaps = 20/221 (9%)

Query: 68  VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLIS 125
           + A LE   +    + +     + D+ + +  ++  G+P             +     I 
Sbjct: 588 LAAKLEAHGVKILGTSLEDLDRAEDRDKFEAALTQLGIPQPVGKTATTVEQAVAIADKIG 647

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            P +++P        + ++ + + +   +  +   +    +LI++Y+ G E+    + D 
Sbjct: 648 YPVLVRPSYVLGGRAMEIVYRQEELLHYMKNAVKVHADHPVLIDRYMVGKEIEVDAISDG 707

Query: 186 S---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCR 241
               +      + ++  +S        +S  V P + +   + +++        + +   
Sbjct: 708 ENVFIPGIMEHIERAGVHS-------GDSIGVYPPQSLSAKLKEQIIEHTIALGKGLNIV 760

Query: 242 GISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277
           G+    F+      +V+ +E+N       P ++ ++  P  
Sbjct: 761 GLLNIQFVV--FEDQVYVIEVNPRASRTVPFLSKITGVPMA 799



 Score = 65.5 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 42/260 (16%), Positives = 96/260 (36%), Gaps = 13/260 (5%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMR 95
             V  ++   +PD     L G  G +  V+     ILE   +    + + A   + D+  
Sbjct: 18  EFVSRIIRKERPDAILPTLGGQTGLNMAVELAKSGILEECGVEILGTKLSAIEQAEDRDL 77

Query: 96  SKQVVSSCGVPVCPSILVNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153
            + ++     P+  S +++      +    I  P +++P       G  +   ++ +   
Sbjct: 78  FRTLMQELNEPIPSSTIIHTLEEAHEFVKEIGYPVIVRPAFTMGGTGGGICSNEEELIEI 137

Query: 154 LLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212
           +      +   Q L+E+ + G  E+   VM D++ +   I V   +       ++  +  
Sbjct: 138 VSGGLKHSPVTQCLLEKSIAGCKEIEYEVMRDSNDNA--IVVCNMENIDPVGVHTGDSIV 195

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
                 +    Y+ ++  +    +A+G  G        DP S + + +E+N  P ++  S
Sbjct: 196 VAPSQTLSDREYQMLRNTSLRIIRALGIEGGCNVQLALDPHSFQYYVIEVN--PRVSRSS 253

Query: 273 IFPEMAAYAGYSFRELLLWM 292
                +   GY   +L   +
Sbjct: 254 --ALASKATGYPIAKLAAKI 271


>gi|297565958|ref|YP_003684930.1| phosphoribosylamine/glycine ligase [Meiothermus silvanus DSM 9946]
 gi|296850407|gb|ADH63422.1| phosphoribosylamine/glycine ligase [Meiothermus silvanus DSM 9946]
          Length = 423

 Score = 66.3 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 24/164 (14%), Positives = 54/164 (32%), Gaps = 6/164 (3%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--FTMDSQHLISPPYV 129
           LE   +        A+ +   K  +K V+   G+P     + +     ++       P V
Sbjct: 81  LEERGVRVFGPRAKAAMIEGSKAFAKSVMERYGIPTARYRVFHDALEALEYLEKAGTPIV 140

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQS---SSWNHGDQLLIEQYVDGIELTC-GVMGDA 185
           +K     +  G+ V          +      +      +++IE++++G E+T   V    
Sbjct: 141 VKDSGLAAGKGVTVAHTVHQAKQAVANILGPADEARSGEVVIEEFLEGPEVTVLAVTDGT 200

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           ++     +         +    +     V P  +   +  EVQ 
Sbjct: 201 TIKPLIPSQDHKRLRDGDEGPMTGGMGAVAPYPLGEALLAEVQH 244


>gi|183597987|ref|ZP_02959480.1| hypothetical protein PROSTU_01338 [Providencia stuartii ATCC 25827]
 gi|188022761|gb|EDU60801.1| hypothetical protein PROSTU_01338 [Providencia stuartii ATCC 25827]
          Length = 448

 Score = 66.3 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 39/222 (17%), Positives = 80/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         L  DK+ + + +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAEQVERSGFIFIGPKAETIRLMGDKVSAIEAMKIAGVPCVPGSDG 136

Query: 112 ---LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
                          I  P +IK   GG   G+ V++ ++ +   +     ++ +  + D
Sbjct: 137 PLGSDTDKNKAIAQRIGYPVIIKASGGGGGRGMRVVRNEKDLESSINLTRAEAKAAFNND 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+Y++    +   VM D   +   +A           K          PA  I  +
Sbjct: 197 MVYMEKYLENPRHVEIQVMADGQGNAIYLAERDCSMQRRHQK-----VVEEAPAPGITPE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + + +      A   IG RG    +FL+   + + +++E+N 
Sbjct: 252 VRRNIGERCANACIEIGYRGAGTFEFLY--ENGEFYFIEMNT 291


>gi|54307802|ref|YP_128822.1| carbamoyl phosphate synthase large subunit [Photobacterium
           profundum SS9]
 gi|46912225|emb|CAG19020.1| putative carbamoylphosphate synthase large subunit [Photobacterium
           profundum SS9]
          Length = 1077

 Score = 66.3 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 34/197 (17%), Positives = 79/197 (40%), Gaps = 10/197 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYV 129
           LE   +P   +   A   + D+ R +Q V   G+    +  V    +  +   +I  P V
Sbjct: 653 LEAAGVPIIGTSPDAIDRAEDRERFQQAVDRLGLLQPENATVTTMELAIEKSRIIGFPLV 712

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  +Q +     ++ S ++   +L+++++ D +E+    + D    
Sbjct: 713 VRPSYVLGGRAMEIVYDEQDLRRYFNEAVSVSNESPVLLDRFLDDAVEVDVDAICDGEQV 772

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           V    +   +    +    S +S   LPA  +  +I   ++         +G RG+  + 
Sbjct: 773 VIGGIMEHIE----QAGVHSGDSACSLPAYTLSKEIQDVMREQVKKLAFELGVRGLMNTQ 828

Query: 248 FLFDPLSRKVFWLEINV 264
           F       +V+ +E+N 
Sbjct: 829 FAV--KDNEVYLIEVNP 843



 Score = 64.8 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 44/278 (15%), Positives = 99/278 (35%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D D              V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPDMADATYIEPIHWEVVRNIIAKERPDAVLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV--PVCPS 110
            + G    +  +    + +L+   +    +   A   + D+ R  + + S G+  P   +
Sbjct: 89  TMGGQTALNCALELEKRGVLKEFNVEMIGATADAIDKAEDRSRFDKAMKSIGLECPNADT 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                       ++  P +I+P       G  +    +       +    +  ++LLI++
Sbjct: 149 AKTMEEAYKVLDMVGFPCIIRPSFTMGGSGGGIAYNKEEFEEICTRGLDLSPTNELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + +   +   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCAIEN----FDAMGVHTGDSITVAPAQTLTDKEYQLM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P   ++  +E+N 
Sbjct: 265 RNASLAVLREIGVETGGSNVQFGINPKDGRMVIIEMNP 302


>gi|27877097|dbj|BAC55867.1| biotin carboxylase subunit of acetyl-CoA carboxylase [Acidianus
           brierleyi]
          Length = 509

 Score = 66.3 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 34/219 (15%), Positives = 72/219 (32%), Gaps = 16/219 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+      +E   I +            DK+  K++ +  GVP  P    
Sbjct: 79  AIHPGYGFLSENAEFAEAVEKAGITFIGPSSEVMRKIKDKLDGKRLANMAGVPTAPGSDG 138

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
            +      +     I  P ++K   GG  +GI  +     +     ++    +       
Sbjct: 139 PVTSIDEALKLAEKIGYPIMVKAASGGGGVGITRVDNQDQLMDVWERNKRLAYQAFGKAD 198

Query: 166 LLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           L IE+Y V+   +   ++GD   +       +        K             + ++  
Sbjct: 199 LFIEKYAVNPRHIEFQLIGDKYGNYVVAWERECTIQRRNQK----LIEEAPSPALKMEER 254

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
           + +        + I    +   +  F  +SR  ++LE+N
Sbjct: 255 ESMFEPIIKFGKLINYFTLGTFETAFSDVSRDFYFLELN 293


>gi|242398056|ref|YP_002993480.1| Phosphoribosylglycinamide formyltransferase 2 [Thermococcus
           sibiricus MM 739]
 gi|242264449|gb|ACS89131.1| Phosphoribosylglycinamide formyltransferase 2 [Thermococcus
           sibiricus MM 739]
          Length = 429

 Score = 66.3 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 53/296 (17%), Positives = 99/296 (33%), Gaps = 44/296 (14%)

Query: 19  GKACASALEDAGFKVSQID--------------------VDRSVGLVLAHLKPDLAFNVL 58
           GK  A   +  G +V  +D                        +  ++    PD     +
Sbjct: 28  GKEIAIEAQRLGVEVIAVDRYPNAPAMQVAHKAYVGNMKDKDFLWSIVERENPDAIVPEI 87

Query: 59  HGNFGEDGLVQAILELLEIPY-THSGILASALSMDKMRSKQ-VVSSCGVPVCPSILVNRF 116
                    + A+ EL +  Y       A+ ++M + R+++ +     VP          
Sbjct: 88  EAIN-----LDALFELEKEGYFVVPNAKATWIAMHRERTRETLAKEAKVPTSRYAYATTL 142

Query: 117 TM--DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD--LLQSSSWNHGDQLLIEQYV 172
               D+   I  P   K +   S  G   +K  + IP    + +  +    D++++E+++
Sbjct: 143 DELYDACEKIGYPCHTKAIMSSSGKGSYFVKGPEDIPKAWEVAKKKARGSADKIIVEEHI 202

Query: 173 ----DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
               +  EL      +    VT    P    Y  E  Y S       PA+I     +EV 
Sbjct: 203 NFDIEITELAVRHFDENGKIVTTFPKP-VGHYQIEGDYHSSW----QPAEISEKAEREVY 257

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
           R+A      +G  GI   +        KV+  E++ +P      +    +   G+S
Sbjct: 258 RIAKAITDVLGGLGIFGVEMFV--KGDKVWANEVSPRP--HDTGMVTMASHPTGFS 309


>gi|108804537|ref|YP_644474.1| 3-methylcrotonoyl-CoA carboxylase subunit alpha [Rubrobacter
           xylanophilus DSM 9941]
 gi|108765780|gb|ABG04662.1| 3-methylcrotonoyl-CoA carboxylase, alpha subunit [Rubrobacter
           xylanophilus DSM 9941]
          Length = 652

 Score = 66.3 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 35/219 (15%), Positives = 69/219 (31%), Gaps = 18/219 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E       +      +      A      K+R+K++    GVP  P    
Sbjct: 78  AVHPGYGFLAESAAFARAVREAGAVWVGPPPEAMEAMALKVRAKEIARRAGVPTVPGYDG 137

Query: 112 --LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
                         I  P +IK   GG   G+  + + Q     +  +            
Sbjct: 138 EDASEERLAAEARRIGYPVLIKASAGGGGRGMRAVARPQDFLEAVRAARREALSAFGDGS 197

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E++++    +   V+GD    V  +   +        K             +  ++ 
Sbjct: 198 VFLEKFIEHPRHIEVQVIGDEHGKVLHLFERECSIQRRHQK----VIEEAPSPALEPELR 253

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
           +E+   A    +  G R     +FL D      ++LE+N
Sbjct: 254 EEICSAAVRLAREAGYRNAGTVEFLLD--GEAFYFLEMN 290


>gi|317035139|ref|XP_001401183.2| hypothetical protein ANI_1_1518124 [Aspergillus niger CBS 513.88]
          Length = 375

 Score = 66.3 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 41/226 (18%), Positives = 81/226 (35%), Gaps = 23/226 (10%)

Query: 92  DKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKD 147
           DK      +   G    P   +   + +   ++      P V KP++G  S G+ V    
Sbjct: 136 DKAYLNDQLRIHGSFTLPRSWLISNSDNISPILDSIPCYPVVGKPVRGRGSHGVKVCHDR 195

Query: 148 QSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV---TEIAVPKSDFYSYEL 204
             +   +  S+       +++E+++ G E T  VM  +       +   + + +      
Sbjct: 196 AELEEHI--SALLLESPIVMVEEFLTGEEATITVMPPSREGPEYWSLPPITRFNHVDGIA 253

Query: 205 KYS-----SLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
            Y+     + NS  V  +++  + Y+   R      + IG     R D        +   
Sbjct: 254 PYNGTVAVTANSRAVTESEMQDESYRSAMRQCEQVAKLIGATAPIRIDIRRFSEGSQFAI 313

Query: 260 LEINVQPGMT---------PVSIFPEMAAYAGYSFRELLLWMVEDA 296
            +IN++P MT           S+    AA  G+ +  LL  ++  A
Sbjct: 314 FDINMKPNMTGPGRPGREDQASLTALAAAAIGWDYGMLLHKILSSA 359


>gi|294636685|ref|ZP_06715033.1| putative siderophore biosynthesis protein [Edwardsiella tarda ATCC
           23685]
 gi|291090094|gb|EFE22655.1| putative siderophore biosynthesis protein [Edwardsiella tarda ATCC
           23685]
          Length = 389

 Score = 66.3 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 44/193 (22%), Positives = 73/193 (37%), Gaps = 20/193 (10%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIK 131
           LEL   P+          + +K R +Q ++  G+P   S+ +   T         P V+K
Sbjct: 96  LELPGKPWP-----ICYAAKEKWRMRQRLAHLGLPSVWSLPLLPDTPIDPDW-PWPLVLK 149

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P +G +SL +  ++    +        ++  G  +L+EQY+ G   T   +GD       
Sbjct: 150 PSQGVASLHVTRVENPAQLAAA---RDAFPPGSTILLEQYLPGPLFTLETLGDGE---RL 203

Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR-GISRSDFLF 250
           IA+   D       Y      H      P +  +  Q  A    Q  G   G+  S+F+ 
Sbjct: 204 IAIGGFDVTLGAAPYFIETQAHW-----PGEQSQRWQAQALAQLQRFGVGLGVCHSEFIV 258

Query: 251 DPLSRKVFWLEIN 263
            P       +EIN
Sbjct: 259 GPHG--PVLVEIN 269


>gi|259502494|ref|ZP_05745396.1| pyruvate carboxylase [Lactobacillus antri DSM 16041]
 gi|259169520|gb|EEW54015.1| pyruvate carboxylase [Lactobacillus antri DSM 16041]
          Length = 1143

 Score = 66.3 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 35/240 (14%), Positives = 83/240 (34%), Gaps = 19/240 (7%)

Query: 35  QIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKM 94
            +D+D  +  V      +      +G   E+  +        + +         +  +K+
Sbjct: 61  YLDIDE-IIRVAKESGAEAVHPG-YGFLAENADLAQACADNGLKFIGPKSEHLRMFGNKL 118

Query: 95  RSKQVVSSCGVPVCPSILVNRFTM----DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150
            +K+V    G+   P +  +   +    D  H    P ++K   GG   G+ +I  DQ +
Sbjct: 119 EAKRVAVEAGLKPIPGLSGDIKDVEQVRDFAHQYGYPIMVKAANGGGGRGMRIINDDQEL 178

Query: 151 --PLDLLQSSSWNH--GDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205
               D  +  +       ++ +E+ V +   +   V+ D    V              ++
Sbjct: 179 TDEFDQARDEALKSFGSSEMYVEKDVQEPKHIEVQVIADEHGHVM-----HLFERDCSVQ 233

Query: 206 YSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
                     P   +  +   EV  +A    +++  +  +  +FL  P   + +++E+N 
Sbjct: 234 RRHQKVIEFAPSVVLSPERRAEVCNMAVKLMKSVHYQNAATIEFLETP--DQFYFIEVNP 291


>gi|271502091|ref|YP_003335117.1| carbamoyl-phosphate synthase large subunit [Dickeya dadantii
           Ech586]
 gi|270345646|gb|ACZ78411.1| carbamoyl-phosphate synthase, large subunit [Dickeya dadantii
           Ech586]
          Length = 1074

 Score = 66.3 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 50/319 (15%), Positives = 107/319 (33%), Gaps = 52/319 (16%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D +              V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +    Q +L    +    +   A   + D+ R    +   G+    S +
Sbjct: 89  TMGGQTALNCALELERQGVLAEFGVTMIGATADAIDKAEDRRRFDIAMKKIGLETARSGI 148

Query: 113 VNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     +     +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHNMDEALAVAADVGYPCIIRPSFTMGGTGGGIAYNREEFEEICTRGLDLSPTKELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + + +   ++   D           +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENLDAMGIHT----GDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV-----------QPGMTPVSIFP 275
           +  +    + IG   G S   F  +P + ++  +E+N              G        
Sbjct: 265 RNASMAVLREIGVETGGSNVQFAVNPKTGRLIVIEMNPRVSRSSALASKATGF----PIA 320

Query: 276 EMAA--YAGYSFRELLLWM 292
           ++AA    GY+  EL+  +
Sbjct: 321 KIAAKLAVGYTLDELMNDI 339



 Score = 59.8 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 77/197 (39%), Gaps = 10/197 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL--ISPPYV 129
           LE   +P   +   A   + D+ R +Q V+  G+    +  V+      +    I  P V
Sbjct: 654 LEAAGVPVIGTSPDAIDRAEDRERFQQAVNRLGLKQPANATVSTIDQAVEKAVNIGYPLV 713

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  +  +      + S ++   +L+++++ D +E+    + D    
Sbjct: 714 VRPSYVLGGRAMEIVYDEIDLRRYFQTAVSVSNDAPVLLDRFLDDAVEVDVDAICDGERV 773

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           +    +   +    +    S +S   LPA  +  +I   +++        +  RG+    
Sbjct: 774 LIGGIMEHIE----QAGVHSGDSACSLPAYTLSKEIQDVMRQQVEKLAFELAVRGLMNVQ 829

Query: 248 FLFDPLSRKVFWLEINV 264
           F     + +V+ +E+N 
Sbjct: 830 FAV--KNNEVYLIEVNP 844


>gi|241667587|ref|ZP_04755165.1| carbamoyl phosphate synthase large subunit [Francisella
           philomiragia subsp. philomiragia ATCC 25015]
 gi|254876132|ref|ZP_05248842.1| carbamoyl-phosphate synthase large chain [Francisella philomiragia
           subsp. philomiragia ATCC 25015]
 gi|254842153|gb|EET20567.1| carbamoyl-phosphate synthase large chain [Francisella philomiragia
           subsp. philomiragia ATCC 25015]
          Length = 1094

 Score = 66.3 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 48/278 (17%), Positives = 101/278 (36%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG      L++ G+ V  +         D               SVG ++A  +PD    
Sbjct: 29  SGTQACKVLKEDGYTVYLVNSNPATIMTDPTTADKIFIEPITVESVGKIIARERPDAILP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      ILE   +    +   +   + ++ R  + ++  G+ V  +++
Sbjct: 89  TVGGQTALNCALALDKAGILEKYNVEMLGAKADSIDKAENRERFNKAMAKIGLEVPRNVV 148

Query: 113 VNRFTMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           V       + L  I  P +I+P       G  +    +     +    S +  +++LI++
Sbjct: 149 VQTMEQACKALEDIGLPAIIRPSFTLGGSGGGIAYTKEEFESIVKNGLSLSPTNEVLIDE 208

Query: 171 YVDG-IELTCGVMGDASL-DVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEV 227
            + G  E    V+ D +   +   ++   D           +S  V PA  +    Y+ +
Sbjct: 209 SILGWKEYEMEVIRDKADNSIIVCSIENIDPMGIHT----GDSITVAPALTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + K+  +E+N 
Sbjct: 265 RDASIAVLREIGVETGGSNVQFAVNPETGKLVVIEMNP 302



 Score = 64.4 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/221 (14%), Positives = 85/221 (38%), Gaps = 13/221 (5%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI--SPPYVIKPL 133
            IP   +      L+ D+ R K+++   G+    + +        + ++    P V++P 
Sbjct: 673 NIPILGTDPDKIDLAEDRERFKELLDKVGLKQPLNTIAYTINELKKKIVNVGYPVVVRPS 732

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEI 192
                  + ++   + +   +  ++       +LI+++++   EL    + D    V   
Sbjct: 733 NVLGGRAMEIVHSKEELDAYIKTNAKCILEGPILIDKFLENATELDVDALADGGDRVFVA 792

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
            + +   +  E    S +S   +P + +  +  +EV++      + +   G+    F + 
Sbjct: 793 GIME---HIEEAGIHSGDSACSIPTRSLSDEQIEEVKQATIKLARELNVIGLMNVQFAY- 848

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
             + +++ +E+N +   T     P +A   G S   +   +
Sbjct: 849 -QNGELYVIEVNPRASRT----VPFVAKATGNSIANIATKL 884


>gi|229019089|ref|ZP_04175924.1| Carbamoyl-phosphate synthase large chain [Bacillus cereus AH1273]
 gi|229025333|ref|ZP_04181751.1| Carbamoyl-phosphate synthase large chain [Bacillus cereus AH1272]
 gi|228735918|gb|EEL86495.1| Carbamoyl-phosphate synthase large chain [Bacillus cereus AH1272]
 gi|228742189|gb|EEL92354.1| Carbamoyl-phosphate synthase large chain [Bacillus cereus AH1273]
          Length = 1018

 Score = 66.3 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 26/221 (11%), Positives = 80/221 (36%), Gaps = 20/221 (9%)

Query: 68  VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLIS 125
           + A LE   +    + +     + D+ + +  ++  G+P             +     I 
Sbjct: 588 LAAKLEAHGVKILGTSLEDLDRAEDRDKFEAALTQLGIPQPVGKTATTVEQAVAIADKIG 647

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            P +++P        + ++ + + +   +  +   +    +LI++Y+ G E+    + D 
Sbjct: 648 YPVLVRPSYVLGGRAMEIVYRQEELLHYMKNAVKVHADHPVLIDRYMVGKEIEVDAISDG 707

Query: 186 S---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCR 241
               +      + ++  +S        +S  V P + +   + +++        + +   
Sbjct: 708 ENVFIPGIMEHIERAGVHS-------GDSIGVYPPQSLSAKLKEQIIEHTIALGKGLNIV 760

Query: 242 GISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277
           G+    F+      +V+ +E+N       P ++ ++  P  
Sbjct: 761 GLLNIQFVVFK--DEVYVIEVNPRASRTVPFLSKITGVPMA 799



 Score = 65.5 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 45/261 (17%), Positives = 101/261 (38%), Gaps = 15/261 (5%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMR 95
             V  ++   +PD     L G  G +  V+     ILE   +    + + A   + D+  
Sbjct: 18  EFVSRIIRKERPDAILPTLGGQTGLNMAVELAKSGILEECGVEILGTKLSAIEQAEDRDL 77

Query: 96  SKQVVSSCGVPVCPSILVNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153
            + ++     P+  S +++      +    I  P +++P       G  +   ++ +   
Sbjct: 78  FRTLMQELNEPIPSSTIIHTLEEAHEFVKEIGYPVIVRPAFTMGGTGGGICSNEEELIEI 137

Query: 154 LLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212
           +      +   Q L+E+ + G  E+   VM D++ +   I V   +       ++  +S 
Sbjct: 138 VSGGLKHSPVTQCLLEKSIAGCKEIEYEVMRDSNDNA--IVVCNMENIDPVGVHT-GDSI 194

Query: 213 HVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271
            V P++ +    Y+ ++  +    +A+G  G        DP S + + +E+N  P ++  
Sbjct: 195 VVAPSQTLSDREYQMLRNTSLRIIRALGIEGGCNVQLALDPHSFQYYVIEVN--PRVSRS 252

Query: 272 SIFPEMAAYAGYSFRELLLWM 292
           S     +   GY   +L   +
Sbjct: 253 S--ALASKATGYPIAKLAAKI 271


>gi|229174552|ref|ZP_04302083.1| Carbamoyl-phosphate synthase large chain [Bacillus cereus MM3]
 gi|228608921|gb|EEK66212.1| Carbamoyl-phosphate synthase large chain [Bacillus cereus MM3]
          Length = 1018

 Score = 66.3 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 26/221 (11%), Positives = 80/221 (36%), Gaps = 20/221 (9%)

Query: 68  VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLIS 125
           + A LE   +    + +     + D+ + +  ++  G+P             +     I 
Sbjct: 588 LAAKLEAHGVKILGTSLEDLDRAEDRDKFEAALTQLGIPQPVGKTATTVEQAVAIADKIG 647

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            P +++P        + ++ + + +   +  +   +    +LI++Y+ G E+    + D 
Sbjct: 648 YPVLVRPSYVLGGRAMEIVYRQEELLHYMKNAVKVHADHPVLIDRYMVGKEIEVDAISDG 707

Query: 186 S---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCR 241
               +      + ++  +S        +S  V P + +   + +++        + +   
Sbjct: 708 ENVFIPGIMEHIERAGVHS-------GDSIGVYPPQSLSAKLKEQIIEHTIALGKGLNIV 760

Query: 242 GISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277
           G+    F+      +V+ +E+N       P ++ ++  P  
Sbjct: 761 GLLNIQFVVFK--DEVYVIEVNPRASRTVPFLSKITGVPMA 799



 Score = 65.5 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 42/260 (16%), Positives = 96/260 (36%), Gaps = 13/260 (5%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMR 95
             V  ++   +PD     L G  G +  V+     ILE   +    + + A   + D+  
Sbjct: 18  EFVSRIIRKERPDAILPTLGGQTGLNMAVELAKSGILEECGVEILGTKLSAIEQAEDRDL 77

Query: 96  SKQVVSSCGVPVCPSILVNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153
            + ++     P+  S +++      +    I  P +++P       G  +   ++ +   
Sbjct: 78  FRTLMQELNEPIPSSTIIHTLEEAHEFVKEIGYPVIVRPAFTMGGTGGGICSNEEELIEI 137

Query: 154 LLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212
           +      +   Q L+E+ + G  E+   VM D++ +   I V   +       ++  +  
Sbjct: 138 VSGGLKHSPVTQCLLEKSIAGCKEIEYEVMRDSNDNA--IVVCNMENIDPVGVHTGDSIV 195

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
                 +    Y+ ++  +    +A+G  G        DP S + + +E+N  P ++  S
Sbjct: 196 VAPSQTLSDREYQMLRNTSLRIIRALGIEGGCNVQLALDPYSFQYYVIEVN--PRVSRSS 253

Query: 273 IFPEMAAYAGYSFRELLLWM 292
                +   GY   +L   +
Sbjct: 254 --ALASKATGYPIAKLAAKI 271


>gi|255519100|ref|ZP_05386776.1| carbamoyl phosphate synthase large subunit [Clostridium difficile
           QCD-97b34]
          Length = 324

 Score = 66.3 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 23/165 (13%), Positives = 64/165 (38%), Gaps = 9/165 (5%)

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           +  P +++P       G+ +   ++ +   L  +   +H + +LI++Y+ G E+    + 
Sbjct: 1   LGYPVLVRPSYVLGGQGMEITYNEEKLIQYLDDAFDRDHKNPVLIDKYLTGREIEVDAIC 60

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D    +    +   +       +S  ++T      I  +I +++          +   G+
Sbjct: 61  DKEDILIPGIMEHLERAGV---HSGDSTTMYPSQNISDEIKEKIVEYTKKIALDLNVLGM 117

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
               F+      +++ +E+N +   T     P ++  +G    +L
Sbjct: 118 VNIQFI--EFQNELYIIEVNPRASRT----VPYISKVSGVPIVDL 156


>gi|197334701|ref|YP_002156299.1| phosphoribosylglycinamide formyltransferase 2 [Vibrio fischeri
           MJ11]
 gi|197316191|gb|ACH65638.1| phosphoribosylglycinamide formyltransferase 2 [Vibrio fischeri
           MJ11]
          Length = 391

 Score = 66.3 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 50/276 (18%), Positives = 100/276 (36%), Gaps = 43/276 (15%)

Query: 19  GKACASALEDAGFKVSQID----------------VD----RSVGLVLAHLKPDLAFNVL 58
           GK  A   +  GF+V  +D                +D     ++  V+   +PD     +
Sbjct: 22  GKEVAIECQRLGFEVIAVDRYLNAPAMQVAHRSYAIDMLDANALEEVINKEQPDFVVPEI 81

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKM-RSKQVVSSCGVPVCPSILVNRFT 117
                 D LV+  LE   +        A+ L+M++    +       +P  P   V+ + 
Sbjct: 82  EAI-ATDKLVE--LEKQGLNVV-PTANATKLTMNREGIRRLAAEELQLPTSPYRFVDSYE 137

Query: 118 M--DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL--DLLQSSSWNHGDQLLIEQYVD 173
              ++   +  P VIKP+   S  G  VIK +  I    D  Q    +   ++++E +VD
Sbjct: 138 ELVEAVKFVGMPCVIKPVMSSSGKGQSVIKTEADIRTSWDYAQDGGRSGAGRVIVEGFVD 197

Query: 174 GIELTCGVMGDASLDVTEIAVP---KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
             +    ++   ++D      P   + +   Y   +         P  +     K+ Q  
Sbjct: 198 -FDYEISLLTVRAVDGVHFCAPIGHRQEDGDYRESW--------QPQVMTEAALKQAQNA 248

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
           A     A+G  G+   +        ++++ E++ +P
Sbjct: 249 AEKVVNALGGYGLFGVELFI--KGDRIYFNEVSPRP 282


>gi|184159250|ref|YP_001847589.1| carbamoylphosphate synthase large subunit [Acinetobacter baumannii
           ACICU]
 gi|183210844|gb|ACC58242.1| Carbamoylphosphate synthase large subunit (split gene in MJ)
           [Acinetobacter baumannii ACICU]
          Length = 1076

 Score = 66.3 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 28/196 (14%), Positives = 72/196 (36%), Gaps = 8/196 (4%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYV 129
           LE    P   +   A   + D+ R +Q++    +    + +V            +  P V
Sbjct: 653 LEEAGTPIIGTSPDAIDRAEDRERFQQMIQRLQLRQPNNSIVKSAEEGISEAAKVGYPLV 712

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  +  +   L ++   ++   +L++ ++ D  E+    + D    
Sbjct: 713 VRPSYVLGGRAMEIVYNEDELKRYLREAVQASNEAPVLLDHFLDDATEVDVDCVSDGKDV 772

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           V    +   +       +S  ++  + P  +  +I  E++R      + +G  G+    F
Sbjct: 773 VIGGIMQHIEQAGI---HSGDSACSIPPYSLSKEIQDEMRRQTIAMAKELGVVGLMNVQF 829

Query: 249 LFDPLSRKVFWLEINV 264
                   ++ LE+N 
Sbjct: 830 AV--KGNDIYVLEVNP 843



 Score = 65.5 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 44/278 (15%), Positives = 95/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D              ++V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPSMADATYIEPITWQTVAQIIEKERPDAVLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      +LE   +    +   A   + D+    + +   G+    + +
Sbjct: 89  TMGGQTALNCALALDENGVLEKYGVELIGATKEAIEKAEDRKLFDEAMRKIGLECPKAAI 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  ++ Q     P +I+P       G  +    +       +    +   QLLI++
Sbjct: 149 AETMEEALEIQSRFGFPVIIRPSFTMGGSGGGIAYNREEFLEICERGFDLSPTHQLLIDE 208

Query: 171 YVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + + +   A+   D           +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCAIENFDPMGVHT----GDSITVAPAQTLTDKEYQLM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P   ++  +E+N 
Sbjct: 265 RNASVAVLREIGVETGGSNVQFGINPKDGRMVVIEMNP 302


>gi|154721398|gb|ABS84821.1| pyruvate carboxylase [Toxoplasma gondii]
          Length = 1391

 Score = 66.3 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 33/220 (15%), Positives = 77/220 (35%), Gaps = 20/220 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+    A +E   +           L  DK+ ++ +     V   P    
Sbjct: 286 AIHPGYGFLSENAEFAAAVENAGLMLVGPPPEVIRLMGDKVEARSIAERANVQAVPGTNE 345

Query: 112 LVNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
            V  F   +     I  P ++K   GG   G+  + +++ +         ++ +      
Sbjct: 346 PVTDFEEAAAFCRQIGFPVMLKAAYGGGGRGMRRVFREEELKEAFERATSEAQAAFGNGA 405

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           + +E+ V +G+ +   +MGD   +V              ++        + PA  +   +
Sbjct: 406 MFVEKLVQNGVHIEVQIMGDHFGNVV-----HLHERDCTVQRRHQKVVEIAPAPFLSPAL 460

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            + +   A    + +  +     +FL      + F++E+N
Sbjct: 461 RERILSDAVRLARFVSYQNAGTVEFLV--EGDRHFFIEVN 498


>gi|134081866|emb|CAK42121.1| unnamed protein product [Aspergillus niger]
          Length = 334

 Score = 66.3 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 41/226 (18%), Positives = 81/226 (35%), Gaps = 23/226 (10%)

Query: 92  DKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKD 147
           DK      +   G    P   +   + +   ++      P V KP++G  S G+ V    
Sbjct: 95  DKAYLNDQLRIHGSFTLPRSWLISNSDNISPILDSIPCYPVVGKPVRGRGSHGVKVCHDR 154

Query: 148 QSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV---TEIAVPKSDFYSYEL 204
             +   +  S+       +++E+++ G E T  VM  +       +   + + +      
Sbjct: 155 AELEEHI--SALLLESPIVMVEEFLTGEEATITVMPPSREGPEYWSLPPITRFNHVDGIA 212

Query: 205 KYS-----SLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
            Y+     + NS  V  +++  + Y+   R      + IG     R D        +   
Sbjct: 213 PYNGTVAVTANSRAVTESEMQDESYRSAMRQCEQVAKLIGATAPIRIDIRRFSEGSQFAI 272

Query: 260 LEINVQPGMT---------PVSIFPEMAAYAGYSFRELLLWMVEDA 296
            +IN++P MT           S+    AA  G+ +  LL  ++  A
Sbjct: 273 FDINMKPNMTGPGRPGREDQASLTALAAAAIGWDYGMLLHKILSSA 318


>gi|70607355|ref|YP_256225.1| carbamoyl phosphate synthase large subunit [Sulfolobus
           acidocaldarius DSM 639]
 gi|76364099|sp|Q4J8E8|CARB_SULAC RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|68568003|gb|AAY80932.1| carbamoyl-phosphate synthase L chain [Sulfolobus acidocaldarius DSM
           639]
          Length = 1052

 Score = 66.3 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 54/299 (18%), Positives = 115/299 (38%), Gaps = 38/299 (12%)

Query: 18  SGKACASALEDAGFKVSQI------------DVDR---------SVGLVLAHLKPDLAFN 56
           SG     AL++ G +   +              D+         +V  V+   +PD    
Sbjct: 27  SGSQALKALKEEGIETILVNSNVATVQTSRKFADKLYMIPVTWWTVERVIEKERPDAIMI 86

Query: 57  VLHG----NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
              G    N G D   + IL+   +    + I     ++ + + ++ + +  +PV PS+ 
Sbjct: 87  GFGGQTALNVGVDLYKKEILKKYGVKVLGTPIEGIERALSREKFRETMINVNLPVPPSLS 146

Query: 113 VNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  ++    I  P +++        G  V   ++ +  D+ ++ S ++  ++LIE+
Sbjct: 147 ARSEEEALEKARQIGYPVMVRVSFNLGGRGSTVAWSEEDLKRDIGRALSQSYIHEVLIEK 206

Query: 171 YV-DGIELTCGVMGDASLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
           Y+   IEL   VM D   +   IA  ++ D            ST + P + +    ++++
Sbjct: 207 YLHHWIELEYEVMRDKHGNSAVIACIENLDPMGVHT----GESTVIAPCQTLDNKEFQDM 262

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           + ++    ++I   G     F  +PL+ + + +E    P M+  S     +   GY   
Sbjct: 263 RSMSIDVAKSIDLVGECNVQFALNPLAYEYYIIE--TNPRMSRSS--ALASKATGYPLA 317



 Score = 59.0 bits (142), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 35/281 (12%), Positives = 94/281 (33%), Gaps = 35/281 (12%)

Query: 7   GISSERE---VSLS-SGKACASALEDAGFKVSQIDVDRSVGLVL--------------AH 48
           G+S E +   VSL  S       +    +    +  D  +   L                
Sbjct: 568 GVSVEFDWGVVSLLDSASKYFDEVTIINYNPETVSTDWDIARKLYFDEISVERILDLVRK 627

Query: 49  LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
            K +       G  G    +   LE   +    +   +  ++ D+ +  +++   G+   
Sbjct: 628 EKFNYVATFAGGQIGN--TISKKLEENGVKLLGTSGHSVDIAEDREKFSRLLDKLGIKQP 685

Query: 109 PSILVNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQL 166
             I         +   ++  P +++P    S   + ++  D  +   + +++  +    +
Sbjct: 686 DWISARSIEEVRKFVEMVGYPVLVRPSYVLSGSAMRIVYNDTELVSYIKKATEISSEHPV 745

Query: 167 LIEQYVD---GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLD 222
           ++ +Y+D     E+     G     V    V ++  +S        ++T  +P  K+  +
Sbjct: 746 VVSKYIDNAIEAEIDGASDGRGVYGVVLEHVEEAGVHS-------GDATISIPFKKLSPE 798

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
              +++       + +  +G     F+    +   + +E+N
Sbjct: 799 TVHKMKESIHSISRELNIKGPFNVQFVV--KNGTPYIIEMN 837


>gi|312795592|ref|YP_004028514.1| Carbamoyl-phosphate synthase large chain [Burkholderia rhizoxinica
           HKI 454]
 gi|312167367|emb|CBW74370.1| Carbamoyl-phosphate synthase large chain (EC 6.3.5.5) [Burkholderia
           rhizoxinica HKI 454]
          Length = 795

 Score = 66.3 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 47/285 (16%), Positives = 95/285 (33%), Gaps = 42/285 (14%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +         D D              V  ++A  +PD    
Sbjct: 66  SGAQACKALREEGYKVILVNSNPATIMTDPDTADVTYIEPITWEVVETIIAKERPDAILP 125

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      +L+   +    +   A   + D+ + K+ +   G+    S +
Sbjct: 126 TMGGQTALNCALDLHRHGVLDKYGVELIGASPAAIDKAEDRQKFKEAMDQIGLGSAKSGI 185

Query: 113 VNRFT---------MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
            + +            +      P VI+P       G  +            +    +  
Sbjct: 186 AHSWEEALKVQAEIAQATGGAGYPVVIRPSFTLGGSGGGIAYNRVEFEEICKRGLDLSPT 245

Query: 164 DQLLIEQYVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IP 220
            +LLIE+ + G  E    V+ D   + +   ++   D           +S  V PA+ + 
Sbjct: 246 RELLIEESLLGWKEFEMEVVRDRHDNCIIVCSIENLDPMGIHT----GDSITVAPAQTLT 301

Query: 221 LDIYKEVQRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
              Y+ ++  +    + IG   G S   F  +P   ++  +E+N 
Sbjct: 302 DKEYQLMRDASLAVLREIGVDTGGSNVQFAINPRDGRMIVIEMNP 346



 Score = 44.3 bits (104), Expect = 0.019,   Method: Composition-based stats.
 Identities = 12/104 (11%), Positives = 38/104 (36%), Gaps = 2/104 (1%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYV 129
           LE   +P   +       + D+ R ++++ S G+   P+               I  P V
Sbjct: 692 LEANGVPIVGTSPDMIDAAEDRERFQKLLQSLGLRQPPNRTARTEDEALRLAGEIGYPLV 751

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
           ++P        + ++ + + +   + ++   ++    ++   + 
Sbjct: 752 VRPSYVLGGRAMEIVHEPRDLERYMREAVKVSNDSPGVVGPVLK 795


>gi|289676715|ref|ZP_06497605.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. syringae
          FF5]
          Length = 97

 Score = 66.3 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 1/57 (1%)

Query: 1  MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNV 57
          +A++ GG SSE EVSL S +   +A++   + ++ I VD+ +G  L   + D   N 
Sbjct: 5  VAIVFGGQSSEHEVSLQSARNVINAIDRERYALTLIGVDK-LGRWLHFDEADYLLNA 60


>gi|300023745|ref|YP_003756356.1| carbamoyl-phosphate synthase L chain ATP-binding protein
           [Hyphomicrobium denitrificans ATCC 51888]
 gi|299525566|gb|ADJ24035.1| Carbamoyl-phosphate synthase L chain ATP-binding protein
           [Hyphomicrobium denitrificans ATCC 51888]
          Length = 672

 Score = 66.3 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 41/220 (18%), Positives = 75/220 (34%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E       L+   I +      A A   DK+ SK+  ++  V   P  L 
Sbjct: 77  AVHPGYGFLSEREAFPRALQKHGIVFIGPNAKAIAAMGDKIESKKAAAAAKVSTVPGYLG 136

Query: 114 N----RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSWNHGDQ 165
                +  +   + I  P +IK   GG   G+ +    +       L   ++ S    D+
Sbjct: 137 EIGDAKQAVKIANEIGYPVMIKASAGGGGKGMRIAYNAKEAEEGFQLARSEAKSSFGDDR 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             IE++++    +   V+GD   +V  +   +        K             +     
Sbjct: 197 CFIEKFIENPRHIEIQVLGDKHGNVVYLGERECSIQRRNQKVL----EEAPSPLLDEKTR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K +   A    +A+G       +F      R  F+LE+N 
Sbjct: 253 KAMGEQAVALSKAVGYDSAGTVEF-VAGQDRSFFFLEMNT 291


>gi|167627029|ref|YP_001677529.1| carbamoyl phosphate synthase large subunit [Francisella
           philomiragia subsp. philomiragia ATCC 25017]
 gi|167597030|gb|ABZ87028.1| carbamoyl-phosphate synthase large chain [Francisella philomiragia
           subsp. philomiragia ATCC 25017]
          Length = 1094

 Score = 66.3 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 48/278 (17%), Positives = 101/278 (36%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG      L++ G+ V  +         D               SVG ++A  +PD    
Sbjct: 29  SGTQACKVLKEDGYTVYLVNSNPATIMTDPTTADKIFIEPITVESVGKIIARERPDAILP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      ILE   +    +   +   + ++ R  + ++  G+ V  +++
Sbjct: 89  TVGGQTALNCALALDKAGILEKYNVEMLGAKADSIDKAENRERFNKAMAKIGLEVPRNVV 148

Query: 113 VNRFTMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           V       + L  I  P +I+P       G  +    +     +    S +  +++LI++
Sbjct: 149 VQTMEQAYKALEDIGLPAIIRPSFTLGGSGGGIAYTKEEFESIVKNGLSLSPTNEVLIDE 208

Query: 171 YVDG-IELTCGVMGDASL-DVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEV 227
            + G  E    V+ D +   +   ++   D           +S  V PA  +    Y+ +
Sbjct: 209 SILGWKEYEMEVIRDKADNSIIVCSIENIDPMGIHT----GDSITVAPALTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + K+  +E+N 
Sbjct: 265 RDASIAVLREIGVETGGSNVQFAVNPETGKLVVIEMNP 302



 Score = 60.5 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 31/221 (14%), Positives = 84/221 (38%), Gaps = 13/221 (5%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI--SPPYVIKPL 133
            IP   +      L+ D+ R K+++   G+    + +        + ++    P V++P 
Sbjct: 673 NIPILGTDPDKIDLAEDRERFKELLDKVGLKQPLNTIAYTINELKKKIVNVGYPVVVRPS 732

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEI 192
                  + ++   + +   +  ++       +LI+++++   EL    + D    V   
Sbjct: 733 NVLGGRAMEIVHSKEELDAYIKTNAKCILEGPILIDKFLENATELDVDALADGGDRVFVA 792

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
            + +   +  E    S +S   +P + +  +  +EV++      + +   G+    F + 
Sbjct: 793 GIME---HIEEAGIHSGDSACSIPTRSLSDEQIEEVKQATIKLARELNVIGLMNVQFAY- 848

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
             + ++  +E+N +   T     P +A   G S   +   +
Sbjct: 849 -QNGELCVIEVNPRASRT----VPFVAKATGNSIANIATKL 884


>gi|87310169|ref|ZP_01092301.1| glutathione synthase/ribosomal protein S6 modification enzyme
           (glutaminyl transferase) [Blastopirellula marina DSM
           3645]
 gi|87287159|gb|EAQ79061.1| glutathione synthase/ribosomal protein S6 modification enzyme
           (glutaminyl transferase) [Blastopirellula marina DSM
           3645]
          Length = 487

 Score = 66.3 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 26/187 (13%), Positives = 71/187 (37%), Gaps = 10/187 (5%)

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-QHLISPPYVIKPLKGGSSLGI 141
              +     +K+   ++++   V    +++V   T D     +  P V+K      S G+
Sbjct: 273 DPQSIVRCTNKVFLAEILARHKVATPKTLVVQAETADQIAPQLGFPCVLKEPDSAFSRGV 332

Query: 142 IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI-ELTCGVMGDASLDVTEIAVPKSDFY 200
           + +K +  +   L +   + H D ++ ++++    +   G++    +   +  +    + 
Sbjct: 333 VKVKNEAELGAKLKEF--FEHSDLIIAQEFLPTTFDWRIGIIDRQPIYAAKYFMATGHWQ 390

Query: 201 SYELKYSSLNSTHVLPAKIPLDIY-KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
             + K     + +     IP+++  ++  ++A  A   IG       D      +     
Sbjct: 391 IIQQK--EGKTRYGKSETIPIELAPRKAVQVALKAANLIGDGLYG-VD--VKESNGNFSV 445

Query: 260 LEINVQP 266
           +E+N  P
Sbjct: 446 IEVNDNP 452


>gi|325962687|ref|YP_004240593.1| acetyl/propionyl-CoA carboxylase, subunit alpha [Arthrobacter
           phenanthrenivorans Sphe3]
 gi|323468774|gb|ADX72459.1| acetyl/propionyl-CoA carboxylase, alpha subunit [Arthrobacter
           phenanthrenivorans Sphe3]
          Length = 601

 Score = 66.3 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 74/220 (33%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+    A +    I +      A +   DK++++ +    G P  P    
Sbjct: 87  AIHPGYGFLAENAQFAARVIDAGITWIGPSPEAISALGDKVQARHIAEKVGAPQVPGTAD 146

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL----DLLQSSSWNHGDQ 165
            +      +        P  IK   GG   GI V +  + IP      + ++++     +
Sbjct: 147 PVESAEEILHFVDQYGLPVAIKAAFGGGGRGIKVARTREEIPELFESAVREATAAFGRGE 206

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             IE+++D    +    + DA  +V  ++           K             +  +  
Sbjct: 207 CFIERFLDAPRHVETQCLADAHGNVVVVSTRDCSLQRRNQK----LVEEAPAPFLTEEQN 262

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +   +    +  G  G    +FL       + +LE+N 
Sbjct: 263 RRLYESSKAILKEAGYLGAGTCEFLV-GQDGTISFLEVNT 301


>gi|312136530|ref|YP_004003867.1| carbamoyl-phosphate synthase large subunit [Methanothermus fervidus
           DSM 2088]
 gi|311224249|gb|ADP77105.1| carbamoyl-phosphate synthase large subunit [Methanothermus fervidus
           DSM 2088]
          Length = 1066

 Score = 66.3 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 51/286 (17%), Positives = 95/286 (33%), Gaps = 35/286 (12%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQIDVDRS---------------------VGLV 45
           G ++E + S   G     +L + G K   ++ + +                     V  +
Sbjct: 21  GQAAEFDYS---GSQACKSLREEGVKTILVNSNPATIQTDLEIADKIYLEPLTPKIVAKI 77

Query: 46  LAHLKPDLAFNVLHGNFGED--GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103
           +    PD     + G    +    +  +  L +I    S I       D+      +   
Sbjct: 78  IERENPDALLPTMGGQTALNVATKLSEMGALKDIKVIGSSIETIQRVEDREMFANFMKKI 137

Query: 104 GVPVCPSILVNRFTMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN 161
           G PV     VN      + +  I  P +++P       G  V K  + +   +      +
Sbjct: 138 GEPVPKYRAVNSVEEAFEAVEEIGFPVIVRPAYTLGGTGGGVAKNKKELEEVVSHGLKMS 197

Query: 162 HGDQLLIEQYVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK- 218
             +Q+LI+Q V G  E    VM D     +T   +   D            S  V PA+ 
Sbjct: 198 LVNQVLIDQSVIGWKEFEYEVMRDRKGTCITVCNMENVDPMGIHT----GESIVVAPAQT 253

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +  +  ++++  A     A+G  G     F  +P +     +E+N 
Sbjct: 254 LSDEDNQKLRSAALKIIDALGIEGGCNIQFALNPETGDYLVIEVNP 299



 Score = 63.6 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 47/299 (15%), Positives = 102/299 (34%), Gaps = 45/299 (15%)

Query: 25  ALEDAGFKVSQI-----------DVD----------RSVGLVLAHLKPDLAFNVLHG--- 60
           AL++ GF+   +           DV             V  ++   KPD       G   
Sbjct: 572 ALKNEGFETIMVNNNPETVSTDYDVSDKLYFEPLTAEDVLEIIEKEKPDGVIVQFGGQSS 631

Query: 61  -NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
            N  ED      LE   +    +   +     D+ R  +V+   G+P  P  +   F   
Sbjct: 632 INLAED------LEKEGVKILGTPYESIDKVEDRERFTKVLKKLGIPHPPYGIARSFKEA 685

Query: 120 SQHLI--SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIE 176
            +       P +++P        + ++  D+ +   + ++   +    +LI++++ D IE
Sbjct: 686 KKIAKKIGYPVLVRPSYVLGGRAMEIVYNDKELKEYIEEAVKVSPRHPILIDKFLEDAIE 745

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAH 235
           +    + D         +   +    E    S +S  V+P + +  +  + ++       
Sbjct: 746 VDVDALSDGEDVFIAGIMEHIE----EAGVHSGDSACVIPPQTLSKETIETIEEYTRKLA 801

Query: 236 QAIGCRGISRSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
             +   G+    +     +   KV+ LE N +   T     P ++   G S  ++   +
Sbjct: 802 LELKVVGLINIQYAVKNENGKPKVYVLEANPRASRT----VPFVSKAIGISLAKIAAML 856


>gi|302553282|ref|ZP_07305624.1| predicted protein [Streptomyces viridochromogenes DSM 40736]
 gi|302470900|gb|EFL33993.1| predicted protein [Streptomyces viridochromogenes DSM 40736]
          Length = 411

 Score = 66.3 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 29/196 (14%), Positives = 79/196 (40%), Gaps = 21/196 (10%)

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILV----NRFTMDSQHLISPPYVIKPLKGG 136
            +    +A + +K +  Q +   GVP   ++ +          +   +  P V+KP++  
Sbjct: 101 GNVADLAAATRNKWQMAQALQRHGVPSARTVALVSPEAAERRLAAAGLDYPVVVKPVENT 160

Query: 137 SSLGIIVIKKDQSIPLDLLQSSSW--------NHGDQLLIEQYVDGIELT-CGVMGDASL 187
            S+G+ V++  + +   + ++ +          +    L ++Y++G E +   V+ + + 
Sbjct: 161 GSVGVSVMQGPKELGPAVRRALTHTTDPVYGLAYDTVALAQEYLEGPEYSLVSVVHEGAS 220

Query: 188 DVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR-GISRS 246
             + +    +  Y+ + +     + + +P  +          +     +A+G R GI+ +
Sbjct: 221 THSVL----TRKYTTQGR-EREETGYTVPPDLDELTAARAAGIVLRGLRALGLRNGIAHT 275

Query: 247 DFLFDPLSRKVFWLEI 262
           DF   P       +E+
Sbjct: 276 DFKLTPDG--PVLIEV 289


>gi|254466460|ref|ZP_05079871.1| acetyl-/propionyl-coenzyme A carboxylase alpha chain
           [Rhodobacterales bacterium Y4I]
 gi|206687368|gb|EDZ47850.1| acetyl-/propionyl-coenzyme A carboxylase alpha chain
           [Rhodobacterales bacterium Y4I]
          Length = 658

 Score = 66.3 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 39/215 (18%), Positives = 71/215 (33%), Gaps = 14/215 (6%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI----LVN 114
           +G   E+           + +      A  L  +K  +K+ + + GVP  P         
Sbjct: 84  YGFLSENAEFARACAAAGLVFIGPAPEAIDLMGNKAAAKRRMLAAGVPCVPGYEGADQAA 143

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS-----SSWNHGDQLLIE 169
                    I  P +IK   GG   G+ ++++       L  +     +++  GD +L  
Sbjct: 144 DVLAAEAARIGFPVMIKAAAGGGGKGMRLVRQAADFGAALDLARSEALAAFGCGDVILER 203

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
             +    +   + GDA   V  +            K             +   +   +  
Sbjct: 204 ALLHPRHVEVQIFGDAHGTVIHLGERDCSIQRRHQK----VVEEAPSPAVDAALRARMGA 259

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            A  A QAIG +G    +FL D      ++LE+N 
Sbjct: 260 AAVTAAQAIGYQGAGTVEFLLD-RDGAFYFLEMNT 293


>gi|126642718|ref|YP_001085702.1| carbamoyl-phosphate synthase large subunit [Acinetobacter baumannii
           ATCC 17978]
          Length = 1022

 Score = 66.3 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 28/196 (14%), Positives = 72/196 (36%), Gaps = 8/196 (4%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYV 129
           LE    P   +   A   + D+ R +Q++    +    + +V            +  P V
Sbjct: 599 LEEAGTPIIGTSPDAIDRAEDRERFQQMIQRLQLRQPNNSIVKSAEEGISEAAKVGYPLV 658

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  +  +   L ++   ++   +L++ ++ D  E+    + D    
Sbjct: 659 VRPSYVLGGRAMEIVYNEDELKRYLREAVQASNEAPVLLDHFLDDATEVDVDCVSDGKDV 718

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           V    +   +       +S  ++  + P  +  +I  E++R      + +G  G+    F
Sbjct: 719 VIGGIMQHIEQAGI---HSGDSACSIPPYSLSKEIQDEMRRQTIAMAKELGVVGLMNVQF 775

Query: 249 LFDPLSRKVFWLEINV 264
                   ++ LE+N 
Sbjct: 776 AV--KGNDIYVLEVNP 789



 Score = 56.7 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 38/245 (15%), Positives = 87/245 (35%), Gaps = 16/245 (6%)

Query: 32  KVSQIDVD--RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGIL 85
             + I+    ++V  ++   +PD     + G    +  +      +LE   +    +   
Sbjct: 8   DATYIEPITWQTVAQIIEKERPDAVLPTMGGQTALNCALALDENGVLEKYGVELIGATKE 67

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIV 143
           A   + D+    + +   G+    + +       ++ Q     P +I+P       G  +
Sbjct: 68  AIEKAEDRKLFDEAMRKIGLECPKAAIAETMEEALEIQSRFGFPVIIRPSFTMGGSGGGI 127

Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLD-VTEIAVPKSDFYS 201
               +       +    +   QLLI++ + G  E    V+ D + + +   A+   D   
Sbjct: 128 AYNREEFLEICERGFDLSPTHQLLIDESLIGWKEYEMEVVRDKNDNCIIVCAIENFDPMG 187

Query: 202 YELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFW 259
                   +S  V PA+ +    Y+ ++  +    + IG   G S   F  +P   ++  
Sbjct: 188 VHT----GDSITVAPAQTLTDKEYQLMRNASVAVLREIGVETGGSNVQFGINPKDGRMVV 243

Query: 260 LEINV 264
           +E+N 
Sbjct: 244 IEMNP 248


>gi|91762828|ref|ZP_01264793.1| Carbamoyl-phosphate synthase large chain [Candidatus Pelagibacter
           ubique HTCC1002]
 gi|91718630|gb|EAS85280.1| Carbamoyl-phosphate synthase large chain [Candidatus Pelagibacter
           ubique HTCC1002]
          Length = 1074

 Score = 66.3 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 54/278 (19%), Positives = 104/278 (37%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL+D G+KV  I         D                +  +L   KPD    
Sbjct: 29  SGTQACKALKDEGYKVILINSNPATIMTDPGVADKTYIEPITLEVLEKILKKEKPDAILP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  ++     IL+  +I    +   A + + D+ + ++ +   G+ +  S +
Sbjct: 89  TMGGQTALNLAMEAEKKGILKKYKIELIGANSKAISNAEDRKKFRKNMLDIGLDLPKSKV 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           V+  R    +   I  P +I+P      LG  + K ++     +      +   Q+LIE+
Sbjct: 149 VSHIRDAAKALKQIGLPAIIRPAFTLGGLGGGIAKTEKEYLKIVKDGLHESPVKQILIEE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPA-KIPLDIYKEV 227
            ++G  E    V+ D   +   I   ++ D           +S  V PA  +    Y+ +
Sbjct: 209 CLEGWKEFEMEVVRDKKDNCIIICSIENIDPMGIHT----GDSITVAPALTLTDKEYQVM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P   ++  +E+N 
Sbjct: 265 RNASIACLRKIGVETGGSNVQFAINPKDGRMVIIEMNP 302



 Score = 58.6 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 36/267 (13%), Positives = 96/267 (35%), Gaps = 33/267 (12%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELL 75
           AL+D+GF+   I         D D S  L    LK +  +N++     + G +  I+   
Sbjct: 587 ALKDSGFETIMINCNPETVSTDYDTSDRLYFEPLKEEYVYNII-KKEQQKGNLVGIIAQF 645

Query: 76  E---------------IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTM 118
                           +P   +   +  L+ D+ R ++++    +    S +    +  +
Sbjct: 646 GGQTPIRLAKFLHDNKLPILGTQYTSIDLAEDRDRFRKLLDRLKLKQAESGIAKTYKQAI 705

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIEL 177
                I  P +++P        + ++ +   +   + ++      + +LI++++   +E+
Sbjct: 706 QIAEKIGLPLMVRPSYVLGGRAMEIVHEKSQLKNFVEEAFKAAEENPILIDKFISHAMEV 765

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
               + D         +   +       +S  ++  + P  I   +  E++        A
Sbjct: 766 DVDAISDGKQVFVAGIMQHIEEAGI---HSGDSACCLPPVSIKPKLISEIEIQTKKLALA 822

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINV 264
           +  +G     F     + +++ +E+N 
Sbjct: 823 LNVKGFMNIQFAI--KNDEIYVIEVNP 847


>gi|15833382|ref|NP_312155.1| acetyl-CoA carboxylase biotin carboxylase subunit [Escherichia coli
           O157:H7 str. Sakai]
 gi|168752554|ref|ZP_02777576.1| acetyl-CoA carboxylase, biotin carboxylase [Escherichia coli
           O157:H7 str. EC4113]
 gi|168758930|ref|ZP_02783937.1| acetyl-CoA carboxylase, biotin carboxylase [Escherichia coli
           O157:H7 str. EC4401]
 gi|168769116|ref|ZP_02794123.1| acetyl-CoA carboxylase, biotin carboxylase [Escherichia coli
           O157:H7 str. EC4486]
 gi|168783823|ref|ZP_02808830.1| acetyl-CoA carboxylase, biotin carboxylase [Escherichia coli
           O157:H7 str. EC4076]
 gi|195939999|ref|ZP_03085381.1| acetyl-CoA carboxylase biotin carboxylase subunit [Escherichia coli
           O157:H7 str. EC4024]
 gi|208809706|ref|ZP_03252043.1| acetyl-CoA carboxylase, biotin carboxylase [Escherichia coli
           O157:H7 str. EC4206]
 gi|208814516|ref|ZP_03255845.1| acetyl-CoA carboxylase, biotin carboxylase [Escherichia coli
           O157:H7 str. EC4045]
 gi|208820087|ref|ZP_03260407.1| acetyl-CoA carboxylase, biotin carboxylase [Escherichia coli
           O157:H7 str. EC4042]
 gi|209396842|ref|YP_002272718.1| acetyl-CoA carboxylase, biotin carboxylase [Escherichia coli
           O157:H7 str. EC4115]
 gi|217327855|ref|ZP_03443938.1| acetyl-CoA carboxylase, biotin carboxylase [Escherichia coli
           O157:H7 str. TW14588]
 gi|254795199|ref|YP_003080036.1| acetyl-CoA carboxylase biotin carboxylase subunit [Escherichia coli
           O157:H7 str. TW14359]
 gi|261228261|ref|ZP_05942542.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli O157:H7 str. FRIK2000]
 gi|261255117|ref|ZP_05947650.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli O157:H7 str. FRIK966]
 gi|20137346|sp|Q8X9B6|ACCC_ECO57 RecName: Full=Biotin carboxylase; AltName: Full=Acetyl-CoA
           carboxylase subunit A; Short=ACC
 gi|13363601|dbj|BAB37551.1| acetyl CoA carboxylase biotin carboxylase subunit [Escherichia coli
           O157:H7 str. Sakai]
 gi|188013628|gb|EDU51750.1| acetyl-CoA carboxylase, biotin carboxylase [Escherichia coli
           O157:H7 str. EC4113]
 gi|188998891|gb|EDU67877.1| acetyl-CoA carboxylase, biotin carboxylase [Escherichia coli
           O157:H7 str. EC4076]
 gi|189354350|gb|EDU72769.1| acetyl-CoA carboxylase, biotin carboxylase [Escherichia coli
           O157:H7 str. EC4401]
 gi|189361749|gb|EDU80168.1| acetyl-CoA carboxylase, biotin carboxylase [Escherichia coli
           O157:H7 str. EC4486]
 gi|208729507|gb|EDZ79108.1| acetyl-CoA carboxylase, biotin carboxylase [Escherichia coli
           O157:H7 str. EC4206]
 gi|208735793|gb|EDZ84480.1| acetyl-CoA carboxylase, biotin carboxylase [Escherichia coli
           O157:H7 str. EC4045]
 gi|208740210|gb|EDZ87892.1| acetyl-CoA carboxylase, biotin carboxylase [Escherichia coli
           O157:H7 str. EC4042]
 gi|209158242|gb|ACI35675.1| acetyl-CoA carboxylase, biotin carboxylase [Escherichia coli
           O157:H7 str. EC4115]
 gi|209757580|gb|ACI77102.1| acetyl CoA carboxylase biotin carboxylase subunit [Escherichia
           coli]
 gi|209757582|gb|ACI77103.1| acetyl CoA carboxylase biotin carboxylase subunit [Escherichia
           coli]
 gi|209757586|gb|ACI77105.1| acetyl CoA carboxylase biotin carboxylase subunit [Escherichia
           coli]
 gi|217320222|gb|EEC28647.1| acetyl-CoA carboxylase, biotin carboxylase [Escherichia coli
           O157:H7 str. TW14588]
 gi|254594599|gb|ACT73960.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli O157:H7 str. TW14359]
 gi|320189603|gb|EFW64262.1| Biotin carboxylase of acetyl-CoA carboxylase [Escherichia coli
           O157:H7 str. EC1212]
 gi|320640048|gb|EFX09629.1| acetyl-CoA carboxylase biotin carboxylase subunit [Escherichia coli
           O157:H7 str. G5101]
 gi|326337951|gb|EGD61785.1| Biotin carboxylase of acetyl-CoA carboxylase [Escherichia coli
           O157:H7 str. 1125]
 gi|326347520|gb|EGD71245.1| Biotin carboxylase of acetyl-CoA carboxylase [Escherichia coli
           O157:H7 str. 1044]
          Length = 449

 Score = 66.3 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 80/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         L  DK+ +   +   GVP  P    
Sbjct: 77  AIHPGYGFLSENANFAEQVERSGFIFIGPKAETIRLMGDKVSAIAAMKKAGVPCVPGSDG 136

Query: 112 -LVNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
            L +    +      I  P +IK   GG   G+ V++ D  +   +     ++ +    D
Sbjct: 137 PLGDDMDKNRAIAKRIGYPVIIKASGGGGGRGMRVVRGDAELAQSISMTRAEAKAAFSND 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+Y++    +   V+ D   +   +A           K          PA  I  +
Sbjct: 197 MVYMEKYLENPRHVEIQVLADGQGNSIYLAERDCSMQRRHQK-----VVEEAPAPGITPE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + + +      A   IG RG    +FLF   + + +++E+N 
Sbjct: 252 LRRYIGERCAKACVDIGYRGAGTFEFLF--ENGEFYFIEMNT 291


>gi|302853472|ref|XP_002958251.1| hypothetical protein VOLCADRAFT_77870 [Volvox carteri f.
           nagariensis]
 gi|300256439|gb|EFJ40705.1| hypothetical protein VOLCADRAFT_77870 [Volvox carteri f.
           nagariensis]
          Length = 1176

 Score = 66.3 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 45/280 (16%), Positives = 95/280 (33%), Gaps = 38/280 (13%)

Query: 18  SGKACASALEDAGFKVSQID------------VDRSVG---------LVLAHLKPDLAFN 56
           SG     +L+  G++V  ++             DR+            +LA  +PD    
Sbjct: 108 SGTQACKSLKKEGYRVILLNSNPATIMTDPGMADRTYVGPMTPELAEQILAKERPDAILP 167

Query: 57  VLHGNFGEDGL----VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G  G +       + IL    I    + + +   + D+   KQ ++  G+    S  
Sbjct: 168 TMGGQTGLNLAKTLAERGILAKYGIELIGAKLPSIDRAEDRELFKQSMTRIGLKCAKSAT 227

Query: 113 VNRFTMD---SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
                     +  +   P +++P       G  +      +   +    + +   Q+L+E
Sbjct: 228 ATTLEEALTIAADIGKYPIIVRPAFTLGGTGGGIAYNIDELKEIVTGGLTASMTSQVLVE 287

Query: 170 QYVDG-IELTCGVMGD-ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKE 226
           Q + G  E    VM D     +   ++   D           +S  V P++ +     + 
Sbjct: 288 QSLLGWKEFELEVMRDLNDNCMIVCSIENVDPMGVHT----GDSITVAPSQTLTDKELQR 343

Query: 227 VQRLAFLAHQAIG--CRGISRSDFLFDPLSRKVFWLEINV 264
           ++  A    + +G  C G S      +P   ++  +E+N 
Sbjct: 344 LRDAAIAIIREMGVECGG-SNVQMAVNPEDGEMVIIEMNP 382



 Score = 51.7 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/216 (14%), Positives = 79/216 (36%), Gaps = 16/216 (7%)

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYVIKPLKGGSS 138
            +   +  ++ D+ R  ++++   +               +    +  P +I+P      
Sbjct: 753 GTSPESIDIAEDRDRWMELLTKLNIRQPAGGSARSEEEAFEKASKLGYPVMIRPSYVLGG 812

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKS 197
             + ++  ++ +   +  +   +    +LI++Y+D  +EL    + D   +V    + + 
Sbjct: 813 RAMEILYSNEDLKRYVTFAVEVDPERPVLIDKYLDRAVELDVDALCDKDGNVVIAGIME- 871

Query: 198 DFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256
             +  +    S +S   LP + IP  +  E++       +A+   G+    F        
Sbjct: 872 --HIEQAGIHSGDSACSLPTQTIPPKVLDEIRSWTISVAKALNVVGLINIQFAV--QDDV 927

Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYS---FRELL 289
            + +E N +   T     P +A   G+    +  LL
Sbjct: 928 PYIIEANPRASRT----VPFVAKAVGHPIAKYASLL 959


>gi|332876149|ref|ZP_08443931.1| carbamoyl-phosphate synthase, large subunit [Acinetobacter
           baumannii 6014059]
 gi|322509164|gb|ADX04618.1| carbamoylphosphate synthase large subunit [Acinetobacter baumannii
           1656-2]
 gi|323519192|gb|ADX93573.1| carbamoylphosphate synthase large subuni [Acinetobacter baumannii
           TCDC-AB0715]
 gi|332735647|gb|EGJ66692.1| carbamoyl-phosphate synthase, large subunit [Acinetobacter
           baumannii 6014059]
          Length = 1076

 Score = 66.3 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 28/196 (14%), Positives = 72/196 (36%), Gaps = 8/196 (4%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYV 129
           LE    P   +   A   + D+ R +Q++    +    + +V            +  P V
Sbjct: 653 LEEAGTPIIGTSPDAIDRAEDRERFQQMIQRLQLRQPNNSIVKSAEEGISEAAKVGYPLV 712

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  +  +   L ++   ++   +L++ ++ D  E+    + D    
Sbjct: 713 VRPSYVLGGRAMEIVYNEDELKRYLREAVQASNEAPVLLDHFLDDATEVDVDCVSDGKDV 772

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           V    +   +       +S  ++  + P  +  +I  E++R      + +G  G+    F
Sbjct: 773 VIGGIMQHIEQAGI---HSGDSACSIPPYSLSKEIQDEMRRQTIAMAKELGVVGLMNVQF 829

Query: 249 LFDPLSRKVFWLEINV 264
                   ++ LE+N 
Sbjct: 830 AV--KGNDIYVLEVNP 843



 Score = 65.5 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 44/278 (15%), Positives = 95/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D              ++V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPSMADATYIEPITWQTVAQIIEKERPDAVLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      +LE   +    +   A   + D+    + +   G+    + +
Sbjct: 89  TMGGQTALNCALALDENGVLEKYGVELIGATKEAIEKAEDRKLFDEAMRKIGLECPKAAI 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  ++ Q     P +I+P       G  +    +       +    +   QLLI++
Sbjct: 149 AETMEEALEIQSRFGFPVIIRPSFTMGGSGGGIAYNREEFLEICERGFDLSPTHQLLIDE 208

Query: 171 YVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + + +   A+   D           +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCAIENFDPMGVHT----GDSITVAPAQTLTDKEYQLM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P   ++  +E+N 
Sbjct: 265 RNASVAVLREIGVETGGSNVQFGINPKDGRMVVIEMNP 302


>gi|253991181|ref|YP_003042537.1| acetyl-CoA carboxylase biotin carboxylase subunit [Photorhabdus
           asymbiotica subsp. asymbiotica ATCC 43949]
 gi|253782631|emb|CAQ85795.1| biotin carboxylase [Photorhabdus asymbiotica]
          Length = 449

 Score = 66.3 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 39/222 (17%), Positives = 81/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         L  DK+ +   +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAEQVERSGFIFIGPKAETIRLMGDKVSAINAMKKAGVPCVPGSDG 136

Query: 112 -LVNRFTMDS--QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
            L +    +      I  P +IK   GG   G+ V++ D+ +   +     ++ +  + D
Sbjct: 137 PLSDDMEKNKTIAKRIGYPVIIKASGGGGGRGMRVVRSDKDLEQSINMTRAEAKAAFNND 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E++++    +   V+ D       +A           K          PA  I  +
Sbjct: 197 MVYMEKFLENPRHIEIQVLADGQGQAIYLAERDCSMQRRHQK-----VVEEAPAPGITPE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + + +      A   IG RG    +FL+   + + +++E+N 
Sbjct: 252 MRRSIGERCANACIEIGYRGAGTFEFLY--ENGEFYFIEMNT 291


>gi|226314884|ref|YP_002774780.1| arginine-specific carbamoyl-phosphate synthase large chain
           [Brevibacillus brevis NBRC 100599]
 gi|226097834|dbj|BAH46276.1| arginine-specific carbamoyl-phosphate synthase large chain
           [Brevibacillus brevis NBRC 100599]
          Length = 1080

 Score = 66.3 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 58/275 (21%), Positives = 109/275 (39%), Gaps = 33/275 (12%)

Query: 19  GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57
            +AC S L++AG +V  ++ +                      SV  ++A  +PD     
Sbjct: 31  AQACLS-LKEAGVQVVLVNNNPATIMTDEQVADKVYLEPLTVESVTAIIAKERPDGLLPT 89

Query: 58  LHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
           L G  G +  V      +LE   +    + + A     D+   KQ++   G PV  S  V
Sbjct: 90  LGGQTGLNLAVSLAEAGVLEKYSVELLGTPLAAIQNGEDRELFKQLMQQIGEPVPESDTV 149

Query: 114 N--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 ++  + I  P +++P       G  +   + S+        + +   Q+LIE+ 
Sbjct: 150 ESVEAAIEFANAIGYPVIVRPAYTLGGAGGGIAGDEASLRKVAAGGIAASPIGQVLIERS 209

Query: 172 VDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQR 229
           V G  E+   VM DA+   T I V   +     +   + +S  V P++ +    Y+ ++ 
Sbjct: 210 VKGWKEIEYEVMRDAND--TCIIVCNMENLD-PVGIHTGDSIVVAPSQTLTDRQYQMLRS 266

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           ++    +++G  G     F  DP S +   +E+N 
Sbjct: 267 VSTKVIRSLGVVGGCNIQFALDPHSDRYVLIEVNP 301



 Score = 64.4 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 38/227 (16%), Positives = 76/227 (33%), Gaps = 16/227 (7%)

Query: 68  VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLIS 125
           + A LE   +    + + A   + D+     ++    +P  P   V+           I 
Sbjct: 645 LAAKLENAGLKVMGTSLTAIERAEDRELFYAMLRKLDIPHIPGKGVSSLEDATAIAEEIG 704

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPL---DLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            P +++P       G++V+     +     D L     +    LL+++YV G E     +
Sbjct: 705 FPVLMRPSYVIGGQGMVVVHNIDELQATLHDWLNHPEMSMFFPLLVDKYVPGKEAEVDAV 764

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCR 241
            D    +        +           +S  + PA  +  DI  ++        + +   
Sbjct: 765 CDGQSVIIPGIFQHVERAGIHS----GDSVALFPAPHLTDDIKYKIASYTEAIAKEMEAV 820

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           G+    F+ D     V+ LE+N +   T     P  +   G    +L
Sbjct: 821 GLINIQFVID--GETVYVLEVNPRASRT----VPITSKVTGIPMVQL 861


>gi|169794964|ref|YP_001712757.1| carbamoyl-phosphate synthase, large subunit [Acinetobacter
           baumannii AYE]
 gi|213157625|ref|YP_002320423.1| carbamoyl-phosphate synthase, large subunit [Acinetobacter
           baumannii AB0057]
 gi|215482515|ref|YP_002324703.1| Carbamoyl-phosphate synthase large chain(Carbamoyl-phosphate
           synthetase ammonia chain) [Acinetobacter baumannii
           AB307-0294]
 gi|239503381|ref|ZP_04662691.1| Carbamoyl-phosphate synthase large chain(Carbamoyl-phosphate
           synthetase ammonia chain) [Acinetobacter baumannii
           AB900]
 gi|260556446|ref|ZP_05828664.1| carbamoyl-phosphate synthase, large subunit [Acinetobacter
           baumannii ATCC 19606]
 gi|301346070|ref|ZP_07226811.1| carbamoyl-phosphate synthase, large subunit [Acinetobacter
           baumannii AB056]
 gi|301511498|ref|ZP_07236735.1| carbamoyl-phosphate synthase, large subunit [Acinetobacter
           baumannii AB058]
 gi|301595421|ref|ZP_07240429.1| carbamoyl-phosphate synthase, large subunit [Acinetobacter
           baumannii AB059]
 gi|332855123|ref|ZP_08435706.1| carbamoyl-phosphate synthase, large subunit [Acinetobacter
           baumannii 6013150]
 gi|332868231|ref|ZP_08438073.1| carbamoyl-phosphate synthase, large subunit [Acinetobacter
           baumannii 6013113]
 gi|169147891|emb|CAM85754.1| carbamoyl-phosphate synthase, large subunit [Acinetobacter
           baumannii AYE]
 gi|193078157|gb|ABO13100.2| carbamoyl-phosphate synthase large subunit [Acinetobacter baumannii
           ATCC 17978]
 gi|213056785|gb|ACJ41687.1| carbamoyl-phosphate synthase, large subunit [Acinetobacter
           baumannii AB0057]
 gi|213987785|gb|ACJ58084.1| Carbamoyl-phosphate synthase large chain(Carbamoyl-phosphate
           synthetase ammonia chain) [Acinetobacter baumannii
           AB307-0294]
 gi|260409705|gb|EEX03005.1| carbamoyl-phosphate synthase, large subunit [Acinetobacter
           baumannii ATCC 19606]
 gi|332727626|gb|EGJ59045.1| carbamoyl-phosphate synthase, large subunit [Acinetobacter
           baumannii 6013150]
 gi|332733492|gb|EGJ64662.1| carbamoyl-phosphate synthase, large subunit [Acinetobacter
           baumannii 6013113]
          Length = 1076

 Score = 66.3 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 28/196 (14%), Positives = 72/196 (36%), Gaps = 8/196 (4%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYV 129
           LE    P   +   A   + D+ R +Q++    +    + +V            +  P V
Sbjct: 653 LEEAGTPIIGTSPDAIDRAEDRERFQQMIQRLQLRQPNNSIVKSAEEGISEAAKVGYPLV 712

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  +  +   L ++   ++   +L++ ++ D  E+    + D    
Sbjct: 713 VRPSYVLGGRAMEIVYNEDELKRYLREAVQASNEAPVLLDHFLDDATEVDVDCVSDGKDV 772

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           V    +   +       +S  ++  + P  +  +I  E++R      + +G  G+    F
Sbjct: 773 VIGGIMQHIEQAGI---HSGDSACSIPPYSLSKEIQDEMRRQTIAMAKELGVVGLMNVQF 829

Query: 249 LFDPLSRKVFWLEINV 264
                   ++ LE+N 
Sbjct: 830 AV--KGNDIYVLEVNP 843



 Score = 65.5 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 44/278 (15%), Positives = 95/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D              ++V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPSMADATYIEPITWQTVAQIIEKERPDAVLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      +LE   +    +   A   + D+    + +   G+    + +
Sbjct: 89  TMGGQTALNCALALDENGVLEKYGVELIGATKEAIEKAEDRKLFDEAMRKIGLECPKAAI 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  ++ Q     P +I+P       G  +    +       +    +   QLLI++
Sbjct: 149 AETMEEALEIQSRFGFPVIIRPSFTMGGSGGGIAYNREEFLEICERGFDLSPTHQLLIDE 208

Query: 171 YVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + + +   A+   D           +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCAIENFDPMGVHT----GDSITVAPAQTLTDKEYQLM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P   ++  +E+N 
Sbjct: 265 RNASVAVLREIGVETGGSNVQFGINPKDGRMVVIEMNP 302


>gi|94500164|ref|ZP_01306698.1| carbamoyl-phosphate synthase large subunit [Oceanobacter sp. RED65]
 gi|94427737|gb|EAT12713.1| carbamoyl-phosphate synthase large subunit [Oceanobacter sp. RED65]
          Length = 1073

 Score = 66.3 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 42/278 (15%), Positives = 97/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +         D               +V  ++   +PD+   
Sbjct: 29  SGAQACKALREEGYKVILVNSNPATIMTDPSMADATYIEPITVEAVTKIIEQERPDVLLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      +LE   +    +       + D+ R  + +   G+    + +
Sbjct: 89  TMGGQTALNCALGLEKAGVLEKYGVEMIGANADTIDKAEDRDRFDKAMKKIGLECPKASI 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +      + Q  +  P +I+P       G  +    +       +    +  ++LLI++
Sbjct: 149 AHTMEEAWEVQKDLGFPCIIRPSFTMGGSGGGIAYNKEEFEEICTRGLDLSPTNELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + + +   ++   D           +S  V PA+ +     + +
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDPMGVHT----GDSITVAPAQTLSDKELQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RNASLAVLREIGVETGGSNVQFGINPDNGRMVVIEMNP 302



 Score = 64.8 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 27/196 (13%), Positives = 78/196 (39%), Gaps = 8/196 (4%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           LE   +P   +   A   + D+ R +Q++   G+    +  V   +  +     I  P V
Sbjct: 654 LEAAGVPIIGTSPEAIDRAEDRERFQQMIQRLGMKQPKNSTVTSEQEAIQKAAEIGYPLV 713

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           ++P        + ++  + ++   + ++   ++   +L++ ++        V  DA  D 
Sbjct: 714 VRPSYVLGGRAMEIVNDETALVRYMTEAVKVSNDSPVLLDYFL---NQAVEVDIDAVCDG 770

Query: 190 TEIAVPKSDFYSYELK-YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
            ++ +     +  +   +S  ++  + P  +P D+  E++       + +G  G+   + 
Sbjct: 771 EDVVIGAIMQHIEQAGIHSGDSACSLPPYSLPEDVQDEMRAQVAAMARELGVVGL--MNT 828

Query: 249 LFDPLSRKVFWLEINV 264
                  +++ +E+N 
Sbjct: 829 QLAYQDGEIYVIEVNP 844


>gi|221632911|ref|YP_002522133.1| hypothetical protein trd_0913 [Thermomicrobium roseum DSM 5159]
 gi|221157039|gb|ACM06166.1| conserved hypothetical protein [Thermomicrobium roseum DSM 5159]
          Length = 420

 Score = 66.3 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 47/240 (19%), Positives = 86/240 (35%), Gaps = 35/240 (14%)

Query: 66  GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--FTMDSQHL 123
           G V A L    +    +   A+  + DK   +Q +++ GVP   +        T      
Sbjct: 84  GTVLAALIAQRLGLPSNDPDAALAARDKWIMRQRLAAAGVPAPRAQAFPALADTASLARS 143

Query: 124 ISPPYVIKPLKGGSSLGI-------IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
           +S P V+KP +   S G+         ++    I   L          QLL E +V G E
Sbjct: 144 MSYPCVVKPTRLSGSRGVIRADDPLSFVRAVDRIRSILASDGIDLRTAQLLAEPFVPGFE 203

Query: 177 LTC-GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
           +   G++ D    +  +   K D            + +V P+++P  +  E+  +   A 
Sbjct: 204 VAVEGLLTDGEFQLLAL-FDKPDPLDGP---FFEETIYVTPSRLPPTVQDEIVAVTAKAA 259

Query: 236 QAIGCR-GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           +A+G R G   ++   +      + +E+                  AG S   L   ++E
Sbjct: 260 RALGLRTGPVHAELRVNEAG--PWVIEL------------------AGRSIGGLCSRILE 299


>gi|134296507|ref|YP_001120242.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia
           vietnamiensis G4]
 gi|172044367|sp|A4JGK4|PURT_BURVG RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|134139664|gb|ABO55407.1| formate-dependent phosphoribosylglycinamide formyltransferase
           [Burkholderia vietnamiensis G4]
          Length = 404

 Score = 66.3 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 47/277 (16%), Positives = 95/277 (34%), Gaps = 38/277 (13%)

Query: 19  GKACASALEDAGFKVSQID----------------VDRSVGLVLAHL----KPDLAFNVL 58
           GK    AL+  G +V  +D                +D +    L  L    +P L    +
Sbjct: 27  GKEVIIALQRLGVEVIAVDRYPDAPGHQVAHRAHVIDMTDAAALRALVEAERPHLIVPEI 86

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKM-RSKQVVSSCGVPVCPSILVNRFT 117
                 D L  A +E   +        A+ L+M++    +      G+   P    + F 
Sbjct: 87  EAI-ATDAL--AAIEAAGLAEVIPTARATQLTMNREGIRRLAAEELGLATSPYAFADSFD 143

Query: 118 MDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH--GDQLLIEQYVD 173
             S  +  I  P V+KP+   S  G  V++ +  +      + +       ++++E ++D
Sbjct: 144 AFSAAVAKIGMPCVVKPVMSSSGKGQSVVRSEADVKAAWDYAMAGGRVNHGRVIVEGFID 203

Query: 174 ----GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
                 +LT   +  A+L                  Y         P  +     ++ + 
Sbjct: 204 FDYEITQLTVRAIDPATLATRTYFCEPVGHVQVAGDY----VESWQPQPMSAAALQKSRD 259

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
           +A    +A+G RG+   +         V++ E++ +P
Sbjct: 260 IAHKVTEALGGRGLFGVELFVR--GDDVWFSEVSPRP 294


>gi|126667845|ref|ZP_01738811.1| 3-methylcrotonyl-CoA carboxylase alpha chain [Marinobacter sp.
           ELB17]
 gi|126627661|gb|EAZ98292.1| 3-methylcrotonyl-CoA carboxylase alpha chain [Marinobacter sp.
           ELB17]
          Length = 668

 Score = 66.3 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 81/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+       E   + +      A A    K  +K+++   GVP+ P    
Sbjct: 77  AIHPGYGFLSENTGFAESCEANNLVFIGPPSSAIAAMGSKSAAKEIMGKAGVPLVPGYHG 136

Query: 112 ---LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GD 164
               +     ++++    P ++K + GG   G+ V++        L  +   +       
Sbjct: 137 ADQALATLRAEAENC-GFPLLLKAVAGGGGKGMRVVEHIGEFDEALAAAQRESKNAFGNP 195

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            +LIE+Y+     +   V  D   +   +A          ++          PA  +  D
Sbjct: 196 DMLIERYLTQPRHVEIQVFCDQHGNGVYLA-----DRDCSVQRRHQKVLEEAPAPGLSDD 250

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             K +   A  A +AI   G    +FL+D +    F++E+N 
Sbjct: 251 TRKAMGEAAVTAAKAIHYVGAGTVEFLYD-VDGSFFFMEMNT 291


>gi|15615458|ref|NP_243761.1| carbamoyl phosphate synthase large subunit [Bacillus halodurans
           C-125]
 gi|22095533|sp|Q9K8V7|CARY_BACHD RecName: Full=Carbamoyl-phosphate synthase arginine-specific large
           chain; AltName: Full=Carbamoyl-phosphate synthetase
           ammonia chain
 gi|10175517|dbj|BAB06614.1| arginine specific carbamoyl-phosphate synthase large chain
           [Bacillus halodurans C-125]
          Length = 1047

 Score = 66.3 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 47/274 (17%), Positives = 103/274 (37%), Gaps = 31/274 (11%)

Query: 19  GKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFNV 57
            +AC  AL + G +V  ++ +                      SV  ++   +PD     
Sbjct: 31  AQACL-ALREEGIQVILVNNNPATVMTDEACADVVYFEPLTVASVKNIIERERPDGLLAT 89

Query: 58  LHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
           L G  G +  +      ILE   +    + + +     D+   +Q++     PV  S +V
Sbjct: 90  LGGQTGLNLAMKLEEAGILEAYNVELLGTPMESIKKGEDREAFRQLMHELHEPVPESEIV 149

Query: 114 N--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
           +     +D  + +  P +++P       G  + + ++++   +      +   Q LIE+ 
Sbjct: 150 HSVAEAVDFANTVGYPIIVRPAYTLGGAGGGIAESEEALIRIVKGGLELSPIQQCLIEKS 209

Query: 172 VDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
           + G  E+   VM D++   T I V   +       ++  +        +    Y+ ++  
Sbjct: 210 IAGFKEIEYEVMRDSND--TCITVCNMENIDPVGVHTGDSIVVAPSQTLTDQEYQMLRSA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +    + +G  G     F  DP S++ + +E+N 
Sbjct: 268 SLKIIRTLGIVGGCNIQFALDPDSKQYYLIEVNP 301



 Score = 54.7 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/212 (14%), Positives = 73/212 (34%), Gaps = 15/212 (7%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQHLISPPYV 129
           LE   +    +         D+ R  + + S  VP  P          + +   I  P +
Sbjct: 651 LEEAGVSILGTTQDVIDQLEDRERFYEFMRSVEVPHIPGKTAETKEELLKAAQSIGYPIL 710

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           ++P       G+ +    + +     +  + +    +L++ Y  G+E    V+ D     
Sbjct: 711 LRPSYVIGGQGMFIASNQEEL-AAFCEDKNHSVTFPILVDAYYPGVEFEVDVLTDG---- 765

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           ++I +P    +  +    S +S  V P   +     ++         + +  +G+    F
Sbjct: 766 SDIFIPGMFEHVEKAGVHSGDSMAVTPPPTLEAKWKQQAINYTRQIAKGMAYKGLFNIQF 825

Query: 249 LFDPLSRKVFWLEIN-----VQPGMTPVSIFP 275
           +      +++ +E+N       P  +  +  P
Sbjct: 826 VL--YDEELYVIEVNPRASRTVPIFSKATSLP 855


>gi|332530816|ref|ZP_08406742.1| carbamoyl-phosphate synthase large subunit [Hylemonella gracilis
           ATCC 19624]
 gi|332039728|gb|EGI76128.1| carbamoyl-phosphate synthase large subunit [Hylemonella gracilis
           ATCC 19624]
          Length = 1088

 Score = 66.3 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 50/278 (17%), Positives = 101/278 (36%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  I              DV        ++V  ++A  KPD    
Sbjct: 29  SGVQACKALREEGYKVILINSNPATIMTDPATADVTYIEPITWQTVEKIIAKEKPDAILP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      +L   ++    +   A   + D+++ K+ ++  G+    S +
Sbjct: 89  TMGGQTALNCALDLWRHGVLHKYKVELIGATPEAIDKAEDRLKFKEAMTRIGLGSARSGI 148

Query: 113 VNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +        Q  +  P VI+P       G  +    +       +    +   +LLIE+
Sbjct: 149 AHSLDEAWAVQKTVGFPVVIRPSFTLGGTGGGIAYNPEEFETICKRGLEASPTSELLIEE 208

Query: 171 YVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + + +   ++   D           +S  V PA+ +    Y+ +
Sbjct: 209 SLVGWKEYEMEVVRDKADNCIIVCSIENLDPMGVHT----GDSITVAPAQTLTDKEYQVM 264

Query: 228 QRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P   ++  +E+N 
Sbjct: 265 RNASLAVLREIGVDTGGSNVQFSINPADGRMIVIEMNP 302



 Score = 57.4 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 26/202 (12%), Positives = 75/202 (37%), Gaps = 11/202 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF--TMDSQHLISPPYV 129
           LE   +P   +       + D+ R ++++    +   P+         ++    +  P V
Sbjct: 655 LEANGVPIIGTSPDMIDAAEDRERFQKLLHELKLLQPPNATARTEPEALEKAQALGYPLV 714

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++ + + +   + ++   ++   +L+++++ D IE     + D S  
Sbjct: 715 VRPSYVLGGRAMEIVHEQRDLERYMREAVKVSNDSPVLLDRFLNDAIECDVDCVRDKSGR 774

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                V +    +    +S  ++  + P  +      E++R       A+   G+    F
Sbjct: 775 TYIGGVMEHIEQAGV--HSGDSACSLPPYYLSKATVDELKRQTSAMANALQVVGLMNVQF 832

Query: 249 LFDPLSRK------VFWLEINV 264
               + +       ++ LE+N 
Sbjct: 833 AIQQIEKNGTIQDVIYVLEVNP 854


>gi|310817814|ref|YP_003950172.1| hypothetical protein STAUR_0541 [Stigmatella aurantiaca DW4/3-1]
 gi|309390886|gb|ADO68345.1| uncharacterized protein [Stigmatella aurantiaca DW4/3-1]
          Length = 321

 Score = 66.3 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 34/201 (16%), Positives = 79/201 (39%), Gaps = 20/201 (9%)

Query: 71  ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---FTMDSQHLISPP 127
           +LEL  +    +   + +   DK  +  ++   G+ V PS+L++    F+     L    
Sbjct: 82  LLELSGVGVV-NDWASFSACKDKPTANLLLHKHGINVPPSLLLSNEVTFSQLQARLAGWK 140

Query: 128 YVI-KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD--GIELTCGVMGD 184
            ++ KP +     GI+     +++  D + ++  +  D   +E++++    +    +   
Sbjct: 141 GIVFKPRRNHGGKGIMKFDDVETLW-DFILATR-DFMDSYYLEKFIEFGLHDYRVEIFDG 198

Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244
             +            YS +  +    +       +P+   +E +RLA  A +A+G     
Sbjct: 199 QVV----------GGYSRQRTHRFKTNITQGGKMLPVVPTEEQKRLAQAASRAMGVTTTI 248

Query: 245 RSDFLFDPLSRKVFWLEINVQ 265
             D +      K++ LE+N  
Sbjct: 249 -VDMICSETDGKLYVLEVNPI 268


>gi|326318671|ref|YP_004236343.1| cyanophycin synthetase [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323375507|gb|ADX47776.1| cyanophycin synthetase [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 723

 Score = 66.3 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 47/250 (18%), Positives = 85/250 (34%), Gaps = 65/250 (26%)

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILV--NRFTMDSQHLISPPYVIKPLKGGSSLGIIV-IK 145
           ++ DK  +K+++++CGVPV    +V   +   D    I  P  +KP  G  + G+ + + 
Sbjct: 217 IAQDKDFTKRLLATCGVPVPEGRVVANAQEAWDVAQDIGFPVTVKPSDGNHARGVTLELY 276

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE-------------- 191
            +  I      +     G  +++E++++G E    V+G   +                  
Sbjct: 277 GEDEIKAAFALAEP--EGSAVIVERFIEGTEHRLLVVGGKVVAACRGEMVSVSGNGRSTL 334

Query: 192 ----IAVPKSDFYSYELKYSSLNSTHVLPA----------------------------KI 219
                 V +      E +Y         PA                             +
Sbjct: 335 RELVDVVNQDPRRGPEQEYPLDWIKLEAPAVQLELQRQGVTPETVPAQGQNILLQRNGNM 394

Query: 220 PLDIYKEVQ----RLAFLAHQAIGCRGISRSDFLFDPLSRKVF-----WLEINVQPGMT- 269
            +D   EV       A LA + +G   I+  D +   +SR +       LE+N  PG+  
Sbjct: 395 AIDCTDEVHPDVAYYAQLAARIVGL-DIAGMDMILQDVSRPMKEQGGAILEVNAGPGLLM 453

Query: 270 ---PVSIFPE 276
              P S  P 
Sbjct: 454 HLKPTSGTPR 463


>gi|241763202|ref|ZP_04761261.1| cyanophycin synthetase [Acidovorax delafieldii 2AN]
 gi|241367701|gb|EER61967.1| cyanophycin synthetase [Acidovorax delafieldii 2AN]
          Length = 736

 Score = 66.3 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 25/100 (25%), Positives = 48/100 (48%), Gaps = 5/100 (5%)

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIV-IK 145
           ++ DK  +K ++ SCGVP+    +VN      ++   I  P V+KP  G    G+ + + 
Sbjct: 217 IASDKDLTKSLLKSCGVPIPEGQVVNSPEEAWEAAQDIGLPVVVKPSDGNHGRGVTLDLH 276

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
           K + I        ++  G  +++E+++ G E    V+G  
Sbjct: 277 KKEDIEAAYHV--AYPEGSDVMVERFIPGDEHRLLVVGGK 314


>gi|115374505|ref|ZP_01461786.1| tetrahydromethanopterin:alpha-L-glutamate ligase
           (H(4)MPT:alpha-L-glutamate ligase), putative
           [Stigmatella aurantiaca DW4/3-1]
 gi|115368484|gb|EAU67438.1| tetrahydromethanopterin:alpha-L-glutamate ligase
           (H(4)MPT:alpha-L-glutamate ligase), putative
           [Stigmatella aurantiaca DW4/3-1]
          Length = 259

 Score = 66.3 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 34/201 (16%), Positives = 79/201 (39%), Gaps = 20/201 (9%)

Query: 71  ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---FTMDSQHLISPP 127
           +LEL  +    +   + +   DK  +  ++   G+ V PS+L++    F+     L    
Sbjct: 20  LLELSGVGVV-NDWASFSACKDKPTANLLLHKHGINVPPSLLLSNEVTFSQLQARLAGWK 78

Query: 128 YVI-KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD--GIELTCGVMGD 184
            ++ KP +     GI+     +++  D + ++  +  D   +E++++    +    +   
Sbjct: 79  GIVFKPRRNHGGKGIMKFDDVETLW-DFILATR-DFMDSYYLEKFIEFGLHDYRVEIFDG 136

Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244
             +            YS +  +    +       +P+   +E +RLA  A +A+G     
Sbjct: 137 QVV----------GGYSRQRTHRFKTNITQGGKMLPVVPTEEQKRLAQAASRAMGVTTTI 186

Query: 245 RSDFLFDPLSRKVFWLEINVQ 265
             D +      K++ LE+N  
Sbjct: 187 -VDMICSETDGKLYVLEVNPI 206


>gi|145596837|ref|YP_001161134.1| carbamoyl-phosphate synthase L chain, ATP-binding [Salinispora
           tropica CNB-440]
 gi|145306174|gb|ABP56756.1| Carbamoyl-phosphate synthase L chain, ATP-binding [Salinispora
           tropica CNB-440]
          Length = 674

 Score = 66.3 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 38/211 (18%), Positives = 78/211 (36%), Gaps = 17/211 (8%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
           +G   E+      +    + +      A A   DK+ +K +++   VP+ PS        
Sbjct: 82  YGFLAENAEFATAVTDAGLAWVGPPAKAIAAMGDKLAAKTLLAEADVPMLPSWT------ 135

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQLLIEQYVD- 173
           ++  +   P ++K   GG   G+ V++    +   +  +            + IE+YV+ 
Sbjct: 136 EADQVNGFPVLVKAAAGGGGRGMRVVRAADGLTDAVASARREAASAFGDGTVFIERYVER 195

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           G  +   ++GD    V  +            K          P  +  ++ + +   A  
Sbjct: 196 GRHVEVQILGDQFGTVLALGARDCSIQRRHQK-----IVEEAPGVLAPEVRQRLHEAAVA 250

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           A +A+   G    +FL  P    +F+LE+N 
Sbjct: 251 AGRAVDYVGAGTVEFLLAP-DGDIFFLEMNT 280


>gi|332978288|gb|EGK15016.1| carbamoyl-phosphate synthase, large subunit [Psychrobacter sp.
           1501(2011)]
          Length = 1090

 Score = 66.3 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 34/231 (14%), Positives = 86/231 (37%), Gaps = 18/231 (7%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQHLISPPYV 129
           LE   +    +   A   + D+ R + ++    +   P+ L       +     +  P V
Sbjct: 661 LEAAGVNIIGTSPDAIDRAEDRERFQHMIHQLNLIQPPNALATSMEDGLVKAKDVGYPLV 720

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  ++ +   L  +   ++   +L+++++ D IE+    + D +  
Sbjct: 721 VRPSYVLGGRAMEIVYNEEELKHYLRTAVQASNEAPVLLDRFLDDAIEVDVDCVSDGNEV 780

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           V    +   +       +S  ++  + P  +  +I  E++       + +G  G+    F
Sbjct: 781 VIGGIMQHIEQAGV---HSGDSACSLPPYSLSEEICDEMRAQTIAMAKELGVVGLMNVQF 837

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
                   V+ LE+N +   T     P ++   G S  ++       A C+
Sbjct: 838 AV--KDGTVYILEVNPRAART----VPFVSKCIGISLAQI------AARCM 876



 Score = 62.8 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 44/278 (15%), Positives = 96/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +              D         ++V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPAMADATYIEPITWQTVEQIIDKERPDAILP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV--PVCPS 110
            + G    +  +      +L+   +    +   A  ++ D+    Q +   G+  P    
Sbjct: 89  TMGGQTALNCALDLDKNGVLKKYNVELIGASKDAIEMAEDRDLFDQAMKRIGLECPRAEI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                   + Q  +  P +I+P       G  +            +    +   QLLI++
Sbjct: 149 AETMEQAFEIQAKLGFPCIIRPSFTMGGSGGGIAYNRDEFIEICERGFDLSPTHQLLIDE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + +   I   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIICSIEN----FDPMGVHTGDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RNASLAVLREIGVETGGSNVQFGVNPKTGRMVVIEMNP 302


>gi|326386312|ref|ZP_08207936.1| carbamoyl-phosphate synthase L chain, ATP-binding protein
           [Novosphingobium nitrogenifigens DSM 19370]
 gi|326209537|gb|EGD60330.1| carbamoyl-phosphate synthase L chain, ATP-binding protein
           [Novosphingobium nitrogenifigens DSM 19370]
          Length = 673

 Score = 66.3 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 35/223 (15%), Positives = 74/223 (33%), Gaps = 19/223 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E       L    I +    + A A   DK+ SK++    GV V P  + 
Sbjct: 77  AVHPGYGFLSERTAFAEALAAENIAFIGPPVGAIAAMGDKIESKKLAKEAGVNVVPGYVG 136

Query: 114 NRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
                D      + I  P ++K   GG   G+ +   ++ +                 D+
Sbjct: 137 EIDDTDHAVRISNEIGYPVMMKASAGGGGKGMRLAYNEKDVREGFESVKREGLNSFGDDR 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+++ +   +   ++GD   ++  +   +        K             +   + 
Sbjct: 197 VFIEKFILNPRHIEIQILGDQHGNIVYLNERECSIQRRHQK----VVEEAPSPFVSPAMR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLF---DPLSRKVFWLEINV 264
           K +        +A+G       + +    D      ++LE+N 
Sbjct: 253 KAMGEQCVALARAVGYFSAGTVELIVSGADKTGESFYFLEMNT 295


>gi|288553456|ref|YP_003425391.1| carbamoyl phosphate synthase large subunit [Bacillus pseudofirmus
           OF4]
 gi|288544616|gb|ADC48499.1| carbamoyl phosphate synthase large subunit [Bacillus pseudofirmus
           OF4]
          Length = 1048

 Score = 66.3 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 44/248 (17%), Positives = 99/248 (39%), Gaps = 13/248 (5%)

Query: 27  EDAGFKVSQIDV--DRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYT 80
           ++A   V   +     S+  ++   KPD     L G  G +  +      ILE L++   
Sbjct: 57  DEACADVVYFEPLTVESIKKIIQKEKPDGILATLGGQTGLNLALALHDKGILEELDVELL 116

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSS 138
            + I +     D+   + ++     PV  S +V      +     +  P +++P      
Sbjct: 117 GTPIESIKKGEDREEFRALMHELNEPVPESDIVTTVDGALQFAESVGYPIIVRPAYTLGG 176

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKS 197
            G  + + +  +   +    + +  +Q L+E+ + G  E+   VM D +     I   ++
Sbjct: 177 AGGGIAENEAELLRIIKGGLALSPINQCLVEKSIAGFKEIEYEVMRDENDTCITICNMEN 236

Query: 198 DFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256
                 +   + +S  V P++ +    Y+ ++ ++    +A+G  G     F  DP S++
Sbjct: 237 ---IDPVGIHTGDSMVVAPSQTLTDVEYQMLRSVSVKIIRALGIVGGCNIQFALDPYSKR 293

Query: 257 VFWLEINV 264
            + +E+N 
Sbjct: 294 YYLIEVNP 301



 Score = 61.3 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 47/265 (17%), Positives = 96/265 (36%), Gaps = 31/265 (11%)

Query: 23  ASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAI-- 71
           A +L   G++   I         D   +  L    L  +   N++     E G+V  +  
Sbjct: 582 AKSLHQLGYEAIIINNNPETVSTDYATADRLYFEPLTVEDVLNIIDIEEPE-GVVVGLGG 640

Query: 72  ---------LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--FTMDS 120
                    LE   I    +         D+ +  + ++   VP  P +        ++ 
Sbjct: 641 QTAISLVEGLEEAGIHIYGTKTETIDQLEDRGKFYEFMNQVNVPHIPGVTAEHKADAIEK 700

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +++P       G+++    Q +  ++L S  ++    LLI+ Y  G+EL   
Sbjct: 701 ASEIGYPVLVRPSYVIGGQGMMIATSKQELK-EVLDSKQYDLTYPLLIDAYYPGVELEVD 759

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIG 239
           V+ D +    +I +        +    S +S  V P+  +  ++ + +        + + 
Sbjct: 760 VLTDGN----DIYIAGLFEQIEKAGVHSGDSIAVTPSYSVSDEVKELILTYTSKMAKGMD 815

Query: 240 CRGISRSDFLFDPLSRKVFWLEINV 264
            RGI    F+    S  ++ +EIN 
Sbjct: 816 LRGIFNVQFVLFEES--LYVIEINP 838


>gi|169350047|ref|ZP_02866985.1| hypothetical protein CLOSPI_00787 [Clostridium spiroforme DSM 1552]
 gi|169293260|gb|EDS75393.1| hypothetical protein CLOSPI_00787 [Clostridium spiroforme DSM 1552]
          Length = 413

 Score = 66.3 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 36/183 (19%), Positives = 77/183 (42%), Gaps = 8/183 (4%)

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNR--FTMDSQHLISPPYVIKPLKGGSSLG 140
           G   S L  DK+  ++      +   P  LV+     ++    +  P +IKP    +S G
Sbjct: 98  GYNISCLFTDKVLMRKKCKELDLNPIPYALVHNLYDAIEFYDTLGAPAIIKPADSQASKG 157

Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC-GVMGDASLDVTEIAVPKSDF 199
           +  I   Q + +   ++  ++   +++IE++++G EL    ++ D  + V  I     ++
Sbjct: 158 VHKITCRQDMIMYFKEAMDYSRNGKVIIEKFINGFELLVDSLIVDGEIKVLTI----GEY 213

Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
             +  K    +   + P+K P D+ ++V        +  G    SR+   +     K + 
Sbjct: 214 APFAKKDVFSSHKTIFPSKCPKDVKEKVSTFNNQIIKKFGLNN-SRTHAEYLYDGEKCYL 272

Query: 260 LEI 262
           +EI
Sbjct: 273 VEI 275


>gi|183220731|ref|YP_001838727.1| putative oxidase or carboxylase [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
 gi|189910832|ref|YP_001962387.1| dehydrogenase [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Ames)']
 gi|167775508|gb|ABZ93809.1| Dehydrogenase [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Ames)']
 gi|167779153|gb|ABZ97451.1| Putative oxidase or carboxylase [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
          Length = 750

 Score = 66.3 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 39/207 (18%), Positives = 88/207 (42%), Gaps = 13/207 (6%)

Query: 58  LHG--NFGEDG--LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
           +HG    G D    V A+   L++P      + +  + +K++ ++ +   G+P+     V
Sbjct: 74  IHGVITAGTDASMTVAAVASALQLP--GIRFVDAEAASNKVKMRKRLKEFGLPIPRFAPV 131

Query: 114 N--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
              +   D+   ++ P V+KP     + G+I +     + +    +  +    +L++E+Y
Sbjct: 132 WSMQDAKDALDELTFPLVMKPADNMGARGVIKVTNRDDLQVAFRHAKRFCPTGELILEEY 191

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           ++G EL+   +        +I +        E +   +   H +P+ +P D+  EV+R+ 
Sbjct: 192 MEGPELSVDALAFQ----GQIRMTGIADRIIEREPYFIEVGHNMPSSLPKDVLDEVERVM 247

Query: 232 FLAHQAIGCR-GISRSDFLFDPLSRKV 257
               +A+G   G  + D        K+
Sbjct: 248 AGGMRALGIHLGAGKGDIKVTKDGVKI 274


>gi|144898958|emb|CAM75822.1| acetyl-CoA carboxylase, biotin carboxylase [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 447

 Score = 66.3 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 80/220 (36%), Gaps = 18/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     ++E     +         +  DK+ +KQ  ++ G+P  P    
Sbjct: 77  AIHPGYGFLSENADFAQMVEEHGFVFIGPTADHIRMMGDKITAKQAAAAAGLPCVPGSEG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS-----SSWNHGD 164
            +      ++    I  P +IK   GG   G+ V +    +      +     +++ + D
Sbjct: 137 ALETVDDALECAAKIGYPVLIKATAGGGGKGMKVARSADELSEAYKMARNEAKAAFGNAD 196

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             L +       +   ++ D    V  +        S + ++  +      PA +  +  
Sbjct: 197 VYLEKYLGKPRHIEMQILADNYGAVVHLGERD---CSLQRRHQKVLEEAPSPA-LNDEQR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +  +A  A Q +G R     +FLF     + +++E+N 
Sbjct: 253 ARIGDIARKAVQKLGYRNAGTLEFLF--EDGEFYFIEMNT 290


>gi|15835019|ref|NP_296778.1| acetyl-CoA carboxylase biotin carboxylase subunit [Chlamydia
           muridarum Nigg]
 gi|270285185|ref|ZP_06194579.1| acetyl-CoA carboxylase biotin carboxylase subunit [Chlamydia
           muridarum Nigg]
 gi|270289204|ref|ZP_06195506.1| acetyl-CoA carboxylase biotin carboxylase subunit [Chlamydia
           muridarum Weiss]
 gi|301336581|ref|ZP_07224783.1| acetyl-CoA carboxylase biotin carboxylase subunit [Chlamydia
           muridarum MopnTet14]
 gi|7190441|gb|AAF39257.1| acetyl-coenzyme A carboxylase, biotin carboxylase [Chlamydia
           muridarum Nigg]
          Length = 457

 Score = 66.3 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 83/220 (37%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---S 110
            +H  +G   E+    +I E   + +      + A   DK+ +KQ+      PV P    
Sbjct: 76  AVHPGYGFLSENANFASICESCGLTFIGPSAESIATMGDKVAAKQLAKKIKCPVIPGSDG 135

Query: 111 ILVNRFT-MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSWNHGDQ 165
           ++ +    +     I  P VIK + GG   GI ++++             ++ S  +   
Sbjct: 136 VVKDEVEGIRIAEKIGFPIVIKAVAGGGGRGIRIVREKDEFYRAFTAARAEAESGFNNPD 195

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE++++    L   V+GD   +   +            K             +  ++ 
Sbjct: 196 VYIEKFIENPRHLEVQVIGDKYGNYVYLGERDCTVQRRRQK----LIEETPSPILTPEMR 251

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +V ++A    ++ G   +   +FL D   R  +++E+N 
Sbjct: 252 AKVGKVAVDLARSAGYFSVGTVEFLLDAEKR-FYFMEMNT 290


>gi|15803790|ref|NP_289824.1| acetyl-CoA carboxylase biotin carboxylase subunit [Escherichia coli
           O157:H7 EDL933]
 gi|12517883|gb|AAG58384.1|AE005553_6 acetyl CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli O157:H7 str. EDL933]
          Length = 449

 Score = 66.3 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 80/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         L  DK+ +   +   GVP  P    
Sbjct: 77  AIHPGYGFLSENANFAEQVERSGFIFIGPKAETIRLMGDKVSAIAAMKKAGVPCVPGSDG 136

Query: 112 -LVNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
            L +    +      I  P +IK   GG   G+ V++ D  +   +     ++ +    D
Sbjct: 137 PLGDDMDKNRAIAKRIGYPVIIKASGGGGGRGMRVVRGDAELAQSISMTRAEAKAAFSND 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+Y++    +   V+ D   +   +A           K          PA  I  +
Sbjct: 197 MVYMEKYLENPRHVEIQVLADGQGNXIYLAERDCSMQRRHQK-----VVEEAPAPGITPE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + + +      A   IG RG    +FLF   + + +++E+N 
Sbjct: 252 LRRYIGERCAKACVDIGYRGAGTFEFLF--ENGEFYFIEMNT 291


>gi|89099250|ref|ZP_01172128.1| acetyl-CoA carboxylase [Bacillus sp. NRRL B-14911]
 gi|89086096|gb|EAR65219.1| acetyl-CoA carboxylase [Bacillus sp. NRRL B-14911]
          Length = 452

 Score = 66.3 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 82/220 (37%), Gaps = 16/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     +     I +      A      K  +++ +   GVP+ P    
Sbjct: 77  AIHPGYGFLAENAAFAELCRECNIIFVGPTPEAINKMGTKDIARETMREAGVPIVPGSQG 136

Query: 111 ILVNRFTMDS-QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGDQ 165
           ++ +     +    I  P +IK   GG   GI V + ++ +   +     ++ +      
Sbjct: 137 VVKDVDDAKALAEKIDYPVIIKATAGGGGKGIRVARTEEELVKGINITQQEALTAFGNPG 196

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+Y++    +   V+ D   +   +            K             +  +I 
Sbjct: 197 VYIEKYIEDFRHVEIQVLADNYGNTLHLGERDCSIQRRLQKLL----EETPSPALDGEIR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +E+   A  A +A+   G    +F++D  +RK +++E+N 
Sbjct: 253 EEMGAAAVKAAKAVDYTGAGTVEFIYDYQNRKFYFMEMNT 292


>gi|116672211|ref|YP_833144.1| urea amidolyase related protein [Arthrobacter sp. FB24]
 gi|116612320|gb|ABK05044.1| urea amidolyase related protein [Arthrobacter sp. FB24]
          Length = 1234

 Score = 66.3 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 39/215 (18%), Positives = 80/215 (37%), Gaps = 16/215 (7%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF-- 116
           +G   ED      +E   + +         +   K  ++      GVP+     +     
Sbjct: 84  YGFLSEDAGFAEAVEAAGLVFVGPTPEQLRIFGTKHTARDAAQRAGVPMIAGSGLLEDLD 143

Query: 117 -TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL-----DLLQSSSWNHGDQLLIEQ 170
             + +   I  P ++K   GG  +G+ V + +  +         L SSS+     +  E+
Sbjct: 144 AAITASATIDFPLMLKATGGGGGIGMAVCRTEAELAENYARVARLASSSFGTAG-VFAER 202

Query: 171 YVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQ 228
           Y++    +   + GD      E  V         L+          PA  +P  + +E+ 
Sbjct: 203 YIEHARHVEVQIFGDG-----EGRVVSLGDRDCSLQRRHQKVLEEAPAPDLPAGLREELH 257

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
           R +     ++G R     +F++DP+ ++  +LE+N
Sbjct: 258 RSSRALCASVGYRSAGTVEFVYDPVRQEASFLEVN 292


>gi|317133432|ref|YP_004092746.1| ATP-dependent carboxylate-amine ligase domain protein ATP-grasp
           [Ethanoligenens harbinense YUAN-3]
 gi|315471411|gb|ADU28015.1| ATP-dependent carboxylate-amine ligase domain protein ATP-grasp
           [Ethanoligenens harbinense YUAN-3]
          Length = 385

 Score = 66.3 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 35/193 (18%), Positives = 73/193 (37%), Gaps = 19/193 (9%)

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLK 134
           L +P   +    +A+S +K R ++     G+P      V             P ++KP  
Sbjct: 88  LGLP--GNSEACAAVSTNKFRMRRRFRERGIPTPRFWEVASPAESDAVDAPFPLIVKPTD 145

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS----LDVT 190
              S G+  ++   ++   + +    +   + ++E+Y++G E +   +        L VT
Sbjct: 146 RSGSRGVTRVEDRATLREAVARCVGCSFEKKAIVEEYIEGDEYSAESISFRGRHRLLAVT 205

Query: 191 EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC-RGISRSDFL 249
           +     +  +          + HV PA +P      V+   F A  A+    G S ++F 
Sbjct: 206 QKFTTGAPHFI--------ETGHVQPAPVPPG---AVRDAVFAALDALEITCGASHAEFK 254

Query: 250 FDPLSRKVFWLEI 262
                 +V  +E+
Sbjct: 255 VTSA-GEVRLIEV 266


>gi|253698797|ref|YP_003019986.1| phosphoribosylglycinamide formyltransferase 2 [Geobacter sp. M21]
 gi|251773647|gb|ACT16228.1| phosphoribosylglycinamide formyltransferase 2 [Geobacter sp. M21]
          Length = 392

 Score = 66.3 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 32/185 (17%), Positives = 67/185 (36%), Gaps = 18/185 (9%)

Query: 97  KQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL-- 152
           +      G+P              ++   I  P V+KP+   S  G  V++ +  +    
Sbjct: 117 RLAAEELGLPTAAYRFATSTEEFREAVAAIGLPCVVKPIMSSSGKGQSVLRDEADMERCF 176

Query: 153 DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212
                 +    +++++EQ++   +    ++    +  T    P         +    +  
Sbjct: 177 KYAIEGARGASNKVIVEQFIP-FDYEITLLTVRHVGGTSFCPPIG------HRQIDGDYH 229

Query: 213 HVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP---GM 268
               P  +   +  E QR A     ++G RGI   +F       KV++ E++ +P   GM
Sbjct: 230 ESWQPTPMVPAVLAEAQRQAEAVTGSLGGRGIFGVEFFVT--GDKVWFSEVSPRPHDTGM 287

Query: 269 -TPVS 272
            T +S
Sbjct: 288 VTMIS 292


>gi|172044649|sp|Q8EBB7|PURT_SHEON RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
          Length = 391

 Score = 66.3 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 47/280 (16%), Positives = 101/280 (36%), Gaps = 51/280 (18%)

Query: 19  GKACASALEDAGFKVSQID--------------------VDRSVGLVLAHLKPDLAFNVL 58
           GK  A  L+  G +V  +D                      +++  V+   KP L    +
Sbjct: 22  GKEVAIELQRLGVEVIGVDRYPNAPAMQIAHRSHVINMLDAKALRAVIELEKPHLVIPEI 81

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASA----LSMDKM-RSKQVVSSCGVPVCPSILV 113
                E    Q ++E+         ++ +A    L+MD+    +    + G+P  P    
Sbjct: 82  -----EAIATQTLVEMEA---EGLNVVPTARATKLTMDREGIRRLAAETLGLPTSPYFFC 133

Query: 114 NRFTMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLD--LLQSSSWNHGDQLLIE 169
           +  T  +Q +  I  P V+KP+   S  G  VI+            Q      G ++++E
Sbjct: 134 DTETEFNQAISKIGVPCVVKPVMSSSGKGQSVIRNVAQSAKAWQYAQEGGRAGGGRVIVE 193

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVP---KSDFYSYELKYSSLNSTHVLPAKIPLDIYKE 226
            ++   +    ++  ++++      P   + +   Y   +         P  +  D+  +
Sbjct: 194 GFIP-FDYEITLLTISAVNGIHFCAPIGHRQEDGDYRESW--------QPQAMSADVLAK 244

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
            Q +A    +A+G  G+   +         V++ E++ +P
Sbjct: 245 SQAIASKVVEALGGYGLFGVELFVKGSD--VYFSEVSPRP 282


>gi|23013681|ref|ZP_00053549.1| COG0458: Carbamoylphosphate synthase large subunit (split gene in
           MJ) [Magnetospirillum magnetotacticum MS-1]
          Length = 1085

 Score = 66.3 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 83/220 (37%), Gaps = 12/220 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           LE   IP   +   +  L+ D+ R ++++   G+    +         +     I  P V
Sbjct: 663 LENAGIPILGTSPDSIDLAEDRERFQKMLHELGLKQPANGTARSLEEAIKVAEKIGYPVV 722

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           I+P        + ++   +++   ++++   +  D +LI+ Y+ D IE+    + D +  
Sbjct: 723 IRPSFVLGGRAMQIVYDHEALERYMVEAVKVSGDDPVLIDFYLKDAIEVDVDALCDGNQV 782

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                +   +       +S  ++  + P  +      E++R      +A+   G+    +
Sbjct: 783 YVAGIMQHIEEAGI---HSGDSACSLPPYSLDKATIAELERQTAAMAKALNVVGLMNCQY 839

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
                   ++ LE+N +   T     P +A   G    ++
Sbjct: 840 AI--KDGDIYILEVNPRASRT----VPFVAKATGVPIAKI 873



 Score = 55.5 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 46/278 (16%), Positives = 97/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL+D G++V  +         D                V  ++   +PD    
Sbjct: 29  SGVQACKALKDEGYRVILVNSNPATIMTDPGLADATYIEPITPEIVAKIIEKERPDALLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  ++     ILE   +    +     A + D++  +  +   G+    S +
Sbjct: 89  TMGGQTALNTAMKLADMGILEKFGVEMIAAKRDVIAKAEDRLLFRDAMDKIGLESPKSRM 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           V   +   D+   +  P +I+P    +  G  +          +    + +   ++L+E+
Sbjct: 149 VKTLQEARDALDFVGLPAIIRPSFTLAGTGGGIAYNVAEYEHIVSGGLAASPVHEVLVEE 208

Query: 171 YVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEV 227
            V G  E    V+ D   + +   ++   D           +S  V PA  +    Y+ +
Sbjct: 209 SVLGWKEYEMEVVRDKKDNCIIICSIENVDPMGVHT----GDSITVAPALTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P   ++  +E+N 
Sbjct: 265 RNASLAVLREIGVDTGGSNVQFAVNPKDGRMTVIEMNP 302


>gi|332187082|ref|ZP_08388822.1| carbamoyl-phosphate synthase L chain, N-terminal domain protein
           [Sphingomonas sp. S17]
 gi|332012782|gb|EGI54847.1| carbamoyl-phosphate synthase L chain, N-terminal domain protein
           [Sphingomonas sp. S17]
          Length = 616

 Score = 66.3 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 78/225 (34%), Gaps = 22/225 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      +    + +      +      K  +K  + + GVPV P  L 
Sbjct: 76  AIHPGYGFLSENAEFAEAVIAAGLIWVGPDPASIRAMGLKDAAKARMIAAGVPVTPGYLG 135

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
              + +        +  P +IK + GG   G+  +         L     +++S    D+
Sbjct: 136 EDQSPERLAAEADAVGYPVLIKAVAGGGGKGMRRVDDPADFAEALASCRREAASSFGDDR 195

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           +LIE+Y+     +   V GD    V              L+          PA  +    
Sbjct: 196 VLIEKYILSPRHIEVQVFGDRHGQVV-----HLFERDCSLQRRHQKVIEEAPAPGMDAAT 250

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR----KVFWLEINV 264
            + V   A  A QA+   G    +F+ D        +V+++E+N 
Sbjct: 251 REAVCAAAVRAAQAVDYVGAGTIEFIADASEGLRADRVWFMEMNT 295


>gi|297846662|ref|XP_002891212.1| F5J5.19 [Arabidopsis lyrata subsp. lyrata]
 gi|297337054|gb|EFH67471.1| F5J5.19 [Arabidopsis lyrata subsp. lyrata]
          Length = 2252

 Score = 66.3 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 37/241 (15%), Positives = 79/241 (32%), Gaps = 31/241 (12%)

Query: 50  KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109
           + D  +    G+  E+  +   L+   I +      + A   DK+ S  +  +  VP  P
Sbjct: 120 RVDAVWPG-WGHASENPELPDALDAKGIIFLGPPAASMAALGDKIGSSLIAQAADVPTLP 178

Query: 110 S-------------------------ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
                                     +      + S  ++  P +IK   GG   GI  +
Sbjct: 179 WSGSHVKMPPNSNLVTIPEEIYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKV 238

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYE 203
             D  +     Q      G  + I +       L   ++ D   +V+ +           
Sbjct: 239 HNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDKYRNVSALHSRDCSVQRRH 298

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            K        V P     +  K++++ A    +++   G +  ++L+   + + ++LE+N
Sbjct: 299 QKIIEEGPITVAP----PETVKKLEQAARRLAKSVNYVGAATVEYLYSMDTGEYYFLELN 354

Query: 264 V 264
            
Sbjct: 355 P 355


>gi|291548468|emb|CBL21576.1| carbamoyl-phosphate synthase, large subunit [Ruminococcus sp.
           SR1/5]
          Length = 1071

 Score = 66.3 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 32/222 (14%), Positives = 77/222 (34%), Gaps = 13/222 (5%)

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTMDSQHLISPPYVIKP 132
           + +    +       + D+     ++  C +P      V        + + +  P +++P
Sbjct: 653 MGVKILGTSAENVDAAEDRELFDAILEKCEIPRPKGHTVFTAEEAKKAANELGYPVLVRP 712

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192
                  G+ +   D+ +   +   +       +L+++Y+ G E+    + D      +I
Sbjct: 713 SYVLGGQGMRIAVSDEDVEEYIGIINQIAQEHPILVDKYLMGKEIEVDAVCDGE----DI 768

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
            +P    +       S +S  V PA+ I       +        QA+   G+    F+  
Sbjct: 769 LIPGIMEHIERAGIHSGDSISVYPAQTISQKAKDTIAEYTRRLAQALHVIGMINIQFIV- 827

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            +   V+ +E+N +   T     P ++   G     L   ++
Sbjct: 828 -VGEDVYVIEVNPRSSRT----VPYISKVTGIPIVPLATRVI 864



 Score = 59.0 bits (142), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 38/232 (16%), Positives = 78/232 (33%), Gaps = 9/232 (3%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMR 95
             V  ++   KPD     L G  G +  ++      L+   +    +       + D+  
Sbjct: 72  EVVEQLILKEKPDSVLPTLGGQAGLNLAMELEEKGFLKEHNVRLIGTTAATIRKAEDRQE 131

Query: 96  SKQVVSSCGVPVCPSILVNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153
            K  +   G PV  S +V            I  P V++P       G  +   +  +   
Sbjct: 132 FKDTMEKIGEPVAASKVVTTVEDGVAFTQTIGYPVVLRPAYTLGGSGGGIAHNEPELREI 191

Query: 154 LLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212
           L      +   ++L+E+ + G  E+   VM D++ +   I V   +       ++  +  
Sbjct: 192 LENGLRLSRVGEVLVERCIAGWKEIEYEVMRDSAGN--CITVCNMENIDPVGVHTGDSIV 249

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
                 +    Y+ ++  A      +G  G     +   P S +   +E+N 
Sbjct: 250 VAPSQTLGDKEYQMLRTSALNIITELGITGGCNVQYALHPESFEYCVIEVNP 301


>gi|111019238|ref|YP_702210.1| phosphoribosylglycinamide formyltransferase 2 [Rhodococcus jostii
           RHA1]
 gi|122955866|sp|Q0SEI4|PURT_RHOSR RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|110818768|gb|ABG94052.1| phosphoribosylglycinamide formyltransferase 2 [Rhodococcus jostii
           RHA1]
          Length = 403

 Score = 66.3 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 48/277 (17%), Positives = 85/277 (30%), Gaps = 39/277 (14%)

Query: 19  GKACASALEDAGFKVSQID----------------VDRSVGLVL----AHLKPDLAFNVL 58
           GK    AL+  G +V  +D                +D S    L       +P      +
Sbjct: 29  GKEVIIALQRLGVEVIAVDRYDNAPGHQVAHRAHTIDMSDPEALLRLVEEERPHFVVPEI 88

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKM-RSKQVVSSCGVPVCPSILVNRFT 117
                 D L  A +E            A+ L+M++    +      G+P  P        
Sbjct: 89  EAI-ATDAL--ATVEERGTAVVIPTARATQLTMNREGIRRLAAEELGLPTSPYEFAESLE 145

Query: 118 M--DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH--GDQLLIEQYVD 173
               +   I  P VIKP+   S  G   ++    +      + +       ++++E +VD
Sbjct: 146 EVRAATERIGFPCVIKPVMSSSGKGQSTVRDTGGVETAWEYALAGGRINYGRVIVEGFVD 205

Query: 174 ----GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
                 +LT   +G      T    P           S        P  +        + 
Sbjct: 206 FDYEITQLTVRAIGADGEVGTFFCEPIGHLQD-----SGDYVESWQPQPMSDAALARSRE 260

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
           +A     A+G RGI   +         V++ E++ +P
Sbjct: 261 VAEKVTAALGGRGIFGVELFV--KGDDVYFSEVSPRP 295


>gi|291616865|ref|YP_003519607.1| RimK [Pantoea ananatis LMG 20103]
 gi|291151895|gb|ADD76479.1| RimK [Pantoea ananatis LMG 20103]
          Length = 301

 Score = 66.3 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 40/203 (19%), Positives = 85/203 (41%), Gaps = 21/203 (10%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGV--PVCPSILVNRFTMDSQHLISP-PY 128
            E+    Y  +   A   + DK+RS Q+++  G+  PV         T D   ++   P 
Sbjct: 81  FEMCG-SYPLNESAAVTRARDKLRSLQLLARDGIDMPVTGFASSPDDTQDLIAMVGGAPL 139

Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV---DGIELTCGVMGDA 185
           V+K ++G   +G+++ +  Q+     +  +       +L+++++    G ++ C V+GD 
Sbjct: 140 VVKLVEGTQGIGVVLAETRQAAES--VIDAFRGLNAHILVQEFIQEARGRDVRCLVIGDR 197

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
            +   E    + DF S   +     +          DI ++ + +A  A   +G   ++ 
Sbjct: 198 VVAAIERQAKEGDFRSNLHRGGKACTV---------DISEQEREMAVKAAAVLGL-DVAG 247

Query: 246 SDFLFDPLSRKVFWLEINVQPGM 268
            D      +R    +E+N  PG+
Sbjct: 248 VD--ILRSARGPLVMEVNASPGL 268


>gi|167759664|ref|ZP_02431791.1| hypothetical protein CLOSCI_02023 [Clostridium scindens ATCC 35704]
 gi|167662695|gb|EDS06825.1| hypothetical protein CLOSCI_02023 [Clostridium scindens ATCC 35704]
          Length = 1065

 Score = 66.3 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 32/225 (14%), Positives = 79/225 (35%), Gaps = 13/225 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTMDSQHLISPPYV 129
           L  + +P   +       + D+    +++  C +P      +       +    +  P +
Sbjct: 647 LMKMGVPILGTSAENVDAAEDRELFDEILEQCQIPRPTGGTVFTAEEAKEVAGRLGYPVL 706

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           ++P       G+ +   D  I   +   +       +L+++Y+ G E+    + D     
Sbjct: 707 VRPSYVLGGQGMQIAINDHDIDEFIGIINRIAQDHPILVDKYLQGKEIEVDAVCDGE--- 763

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
            +I +P    +       S +S  V PA+ I     + ++       +++   G+    F
Sbjct: 764 -DILIPGIMEHIERAGIHSGDSISVYPAQSITEKTKRTIEDYTKKLARSLHVIGLINIQF 822

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +       V+ +E+N +   T     P ++   G     L   ++
Sbjct: 823 IV--CGEDVYVIEVNPRSSRT----VPYISKVTGIPIVPLATKVI 861



 Score = 46.3 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 41/286 (14%), Positives = 94/286 (32%), Gaps = 33/286 (11%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQID-------VDRSVG--------------LV 45
           G ++E + +   G     +L++ G +V  ++        D+ +                +
Sbjct: 21  GQAAEFDYA---GTQACRSLKEEGLEVVLLNSNPATIMTDKDIADRVYIEPLTVEVVEQL 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   KPD     L G    +  ++      L    +    +       + D++  K  + 
Sbjct: 78  VLKEKPDSVLPTLGGQAALNLAMELEENGFLRRNNVRLIGTTSETIKKAEDRLEFKTTME 137

Query: 102 SCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G P   S++V      ++    I  P V++P       G  +      +   L     
Sbjct: 138 KIGEPCAASLVVESVEEGIEFAEKIGYPVVLRPAYTLGGSGGGIAGDRVQLVEILENGLR 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   Q+L+E+ + G  E+   VM D + +   I V   +       ++  +        
Sbjct: 198 LSRVGQVLVERCIAGWKEIEYEVMRDGNGN--CITVCNMENLDPVGVHTGDSIVVAPSQT 255

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +    Y+ ++  A      +   G     +   P + +   +E+N 
Sbjct: 256 LGDKEYQMLRTSALNIISELNITGGCNVQYALHPETFEYCVIEVNP 301


>gi|291567673|dbj|BAI89945.1| cyanophycin synthetase [Arthrospira platensis NIES-39]
          Length = 895

 Score = 66.3 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 54/121 (44%), Gaps = 4/121 (3%)

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF---TMDSQHLISPPYVIKPLKGG 136
           + +GIL   L+ DK  +KQV+   G+PV    ++  F   T   + +   P  IKPL G 
Sbjct: 207 SSTGILGVELACDKEGTKQVLRDGGIPVPRGTVIRYFEDLTDAIEDVGGYPIAIKPLDGN 266

Query: 137 SSLGIIV-IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195
              GI + + + ++       +S  +    ++IE++  G +    V+    + V+E    
Sbjct: 267 HGRGITLDVTRWETAQAAYDAASEASKTRSVIIERFYKGRDHRVLVVNGRVVAVSERVPA 326

Query: 196 K 196
            
Sbjct: 327 H 327


>gi|152980458|ref|YP_001353932.1| carbamoyl-phosphate synthase large chain [Janthinobacterium sp.
           Marseille]
 gi|151280535|gb|ABR88945.1| carbamoyl-phosphate synthase large chain [Janthinobacterium sp.
           Marseille]
          Length = 1076

 Score = 66.3 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 45/278 (16%), Positives = 98/278 (35%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +              DV        ++V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADVTYIEPITWQAVERIIDKERPDAILP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      +L   +     +   A   + D+ + K  ++  G+    S +
Sbjct: 89  TMGGQTALNCALDLHHNGVLTKYKCELIGASPEAIDKAEDRSKFKDAMTKIGLGSARSGV 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +    +   Q  +  P +I+P       G  +    +       +    +   +LLIE+
Sbjct: 149 SHTLEESWAVQKELGFPVIIRPSFTMGGSGGGIAYNAEEFEAICKRGLEASPTSELLIEE 208

Query: 171 YVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + + +   ++   D           +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEFEMEVVRDKADNCIIVCSIENLDPMGVHT----GDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P   ++  +E+N 
Sbjct: 265 RNASIAVLREIGVDTGGSNVQFSINPADGRMIVIEMNP 302



 Score = 62.4 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 29/202 (14%), Positives = 75/202 (37%), Gaps = 12/202 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           LE   +P   +       + D+ R ++++    +   P+         +     I  P V
Sbjct: 648 LEANGVPIVGTSPDMIDAAEDRERFQKMLHDLKLRQPPNRTARTEEDALRLAQEIGYPLV 707

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++ + + +   + ++   +H   +L+++++ D IE+    + D    
Sbjct: 708 VRPSYVLGGRAMEIVHEQRDLERYMREAVKVSHDSPVLLDRFLNDAIEVDVDCLSDGERT 767

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                +   +       +S  ++  + P  +  +   E++R   L  + +   G+    F
Sbjct: 768 FIGGVMEHIEQAGV---HSGDSACSLPPYSLSQETIDELKRQTSLMAKGLNVVGLMNVQF 824

Query: 249 LF--DPLSRK----VFWLEINV 264
                 +  K    VF LE+N 
Sbjct: 825 AIQQQEIDGKLQDVVFVLEVNP 846


>gi|90415069|ref|ZP_01223027.1| 5'-phosphoribosylglycinamide transformylase [Photobacterium
           profundum 3TCK]
 gi|90323804|gb|EAS40417.1| 5'-phosphoribosylglycinamide transformylase [Photobacterium
           profundum 3TCK]
          Length = 391

 Score = 66.3 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 48/286 (16%), Positives = 102/286 (35%), Gaps = 56/286 (19%)

Query: 19  GKACASALEDAGFKVSQID-VDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEI 77
           GK  A   +  G +V  +D  D +  + +AH       ++L G+      ++ ++EL + 
Sbjct: 22  GKEVAIECQRLGLEVVAVDRYDNAPAMQVAHRSH--VIDMLDGD-----ALRKLIELEQP 74

Query: 78  PYTHSGILASALSMD---------------KMRSKQVVSSCGV----------PVCPSIL 112
            Y    I   A++ D                  +K  ++  G+          P  P   
Sbjct: 75  HYVVPEIE--AIATDTLVSLEAEGVNIVPTANATKLTMNREGIRRLAAEDLQIPTSPFEF 132

Query: 113 VNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL--DLLQSSSWNHGDQLLI 168
            +++   + +   +  P V+KP+   S  G  VIK    I       Q        ++++
Sbjct: 133 ADQYNDFVAAVEHVGTPCVVKPIMSSSGKGQSVIKTPADIEASWQYAQEGGRAGTGRVVV 192

Query: 169 EQYVDGIELTCGVMGDASLDVTEIAVP---KSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
           E ++   +    ++   ++D      P   + +   Y   +         P ++  +  K
Sbjct: 193 EGFIK-FDYEITLLTIRAVDGVHFCAPIGHRQEDGDYRESW--------QPQQMSDEALK 243

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP---GM 268
             Q +A     A+G  G+   +        +V + E++ +P   GM
Sbjct: 244 AAQDVAEKVVNALGGYGLFGVELFVR--GNEVLFNEVSPRPHDTGM 287


>gi|46143324|ref|ZP_00135461.2| COG0027: Formate-dependent phosphoribosylglycinamide
           formyltransferase (GAR transformylase) [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
          Length = 316

 Score = 66.3 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 55/310 (17%), Positives = 102/310 (32%), Gaps = 58/310 (18%)

Query: 19  GKACASALEDAGFKVSQID--------------------VDRSVGLVLAHLKPDLAFNVL 58
           GK     L+  G +V  +D                       ++  ++   KPD     +
Sbjct: 24  GKEVVIELQRLGVEVIAVDRYENAPAQQVAHRAYTISMLDGAALRALVEKEKPDFIVPEV 83

Query: 59  HGNFGEDGLVQAILELLEIPY-THSGILASALSMDKM-RSKQVVSSCGVPVCPSILVNRF 116
                E      ++EL +  Y       A+ L+M++    +      G+   P   V+  
Sbjct: 84  -----EAIATATLVELEQEGYNVVPTAKATQLTMNREGIRRLAAEELGLKTSPYRFVDNL 138

Query: 117 TMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLD--LLQSSSWNHGDQLLIEQYV 172
               Q +  I  P V+KP+   S  G  VIK +  I       Q      G ++++E ++
Sbjct: 139 EDFKQAVAEIGIPCVVKPIMSSSGHGQSVIKSEDQIQQAWDYSQEGGRAGGGRVIVEGFI 198

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYEL----KYSSLNSTHVL-PAKIPLDIYKEV 227
                          ++T++ V   +  S+      +    +      P  +     K  
Sbjct: 199 K-----------FDYEITQLTVRHVNGTSFLAPIGHRQEDGDYRESWQPQAMSDLALKRA 247

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP---GMT-----PVSIFPEMAA 279
           Q  A     A+G RGI   +        ++ + E++ +P   GM       +S F   A 
Sbjct: 248 QETAERITTALGGRGIFGVELFV--CGDEIIFNEVSPRPHDTGMVTMASQELSQFALHAR 305

Query: 280 YA-GYSFREL 288
              G    E+
Sbjct: 306 AILGLPISEI 315


>gi|319760928|ref|YP_004124865.1| carbamoyl-phosphate synthase l chain ATP-binding protein
           [Alicycliphilus denitrificans BC]
 gi|317115489|gb|ADU97977.1| Carbamoyl-phosphate synthase L chain ATP-binding protein
           [Alicycliphilus denitrificans BC]
          Length = 664

 Score = 66.3 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 32/215 (14%), Positives = 76/215 (35%), Gaps = 14/215 (6%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV----N 114
           +G   E+      ++   + +      A     +K ++K++V + G+P  P        +
Sbjct: 90  YGFLAENADFADAVDAAGLVFIGPAGAAIRAMGNKAQAKRLVLAAGMPCIPGYQGADQGD 149

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS-----SWNHGDQLLIE 169
              + +   +  P ++K   GG   G+ ++    ++P  L  +      ++   + +L  
Sbjct: 150 AALLAAAADVGFPVMVKAAAGGGGRGMRLVPDAGALPQALASARSEAEVAFGSAELILER 209

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
             +    +   V+ D+   V  +            K             +   +   +  
Sbjct: 210 AVLAPRHVEIQVLADSHGHVIHLGERDCSVQRRHQK----VIEEAPSPAVDAALRARMGE 265

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            A  A +AIG  G    +FL D    + +++E+N 
Sbjct: 266 AAINAARAIGYIGAGTMEFLLD-RDGRFYFMEMNT 299


>gi|206559639|ref|YP_002230400.1| carbamoyl phosphate synthase large subunit [Burkholderia
           cenocepacia J2315]
 gi|198035677|emb|CAR51564.1| carbamoyl-phosphate synthase large chain [Burkholderia cenocepacia
           J2315]
          Length = 1084

 Score = 66.3 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 26/203 (12%), Positives = 73/203 (35%), Gaps = 13/203 (6%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQHLISPPYV 129
           LE   +P   +       + D+ R ++++   G+   P+         +     I  P V
Sbjct: 655 LEAHGVPIVGTSPDMIDAAEDRERFQKLLQDLGLRQPPNRTARAEDEALALADEIGYPLV 714

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++ + + +   + ++   ++   +L+++++ D IE     + D    
Sbjct: 715 VRPSYVLGGRAMEIVHEPRDLERYMREAVKVSNDSPVLLDRFLNDAIECDVDCICDGEAV 774

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                +   +       +S  ++  + P  +  +   E++R      +A+   G+    F
Sbjct: 775 FIGGVMEHIEQAGV---HSGDSACSLPPYSLSKETVAELKRQTGAMAKALNVVGLMNVQF 831

Query: 249 LFD-------PLSRKVFWLEINV 264
                          ++ LE+N 
Sbjct: 832 AIQQVPQADGSKQDIIYVLEVNP 854



 Score = 65.1 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 49/285 (17%), Positives = 97/285 (34%), Gaps = 42/285 (14%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +              DV          V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYKVVLVNSNPATIMTDPNTADVTYIEPITWEVVARIIEKERPDAILP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      +LE   +    +   A   + D+ + K  ++  G+    S +
Sbjct: 89  TMGGQTALNCALDLHHHGVLEKFGVELIGASPEAIDKAEDRQKFKDAMTKIGLGSAKSGI 148

Query: 113 ---------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
                    V+   M +      P VI+P       G  +    +       +    +  
Sbjct: 149 AHSMEEATKVHAEIMAATGGSGYPVVIRPSFTLGGSGGGIAYNREEFEEICKRGLDLSPT 208

Query: 164 DQLLIEQYVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IP 220
            +LLIE+ + G  E    V+ D + + +   ++   D           +S  V PA+ + 
Sbjct: 209 RELLIEESLLGWKEYEMEVVRDRADNCIIVCSIENLDPMGVHT----GDSITVAPAQTLT 264

Query: 221 LDIYKEVQRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
              Y+ ++  +    + IG   G S   F  +P   ++  +E+N 
Sbjct: 265 DKEYQILRNASLAVLREIGVDTGGSNVQFSINPKDGRMVVIEMNP 309


>gi|170732613|ref|YP_001764560.1| carbamoyl phosphate synthase large subunit [Burkholderia
           cenocepacia MC0-3]
 gi|169815855|gb|ACA90438.1| carbamoyl-phosphate synthase, large subunit [Burkholderia
           cenocepacia MC0-3]
          Length = 1084

 Score = 66.3 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 26/203 (12%), Positives = 73/203 (35%), Gaps = 13/203 (6%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQHLISPPYV 129
           LE   +P   +       + D+ R ++++   G+   P+         +     I  P V
Sbjct: 655 LEAHGVPIVGTSPDMIDAAEDRERFQKLLQDLGLRQPPNRTARAEDEALALADEIGYPLV 714

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++ + + +   + ++   ++   +L+++++ D IE     + D    
Sbjct: 715 VRPSYVLGGRAMEIVHEPRDLERYMREAVKVSNDSPVLLDRFLNDAIECDVDCICDGEAV 774

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                +   +       +S  ++  + P  +  +   E++R      +A+   G+    F
Sbjct: 775 FIGGVMEHIEQAGV---HSGDSACSLPPYSLSKETVAELKRQTGAMAKALNVVGLMNVQF 831

Query: 249 LFD-------PLSRKVFWLEINV 264
                          ++ LE+N 
Sbjct: 832 AIQQVPQADGSKQDIIYVLEVNP 854



 Score = 64.8 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 49/285 (17%), Positives = 97/285 (34%), Gaps = 42/285 (14%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +              DV          V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYKVVLVNSNPATIMTDPNTADVTYIEPITWEVVARIIEKERPDAILP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      +LE   +    +   A   + D+ + K+ ++  G+    S +
Sbjct: 89  TMGGQTALNCALDLHHHGVLEKFGVELIGASPEAIDKAEDRQKFKEAMTKIGLGSAKSGI 148

Query: 113 ---------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
                    V+   M        P VI+P       G  +    +       +    +  
Sbjct: 149 AHSMEEATKVHAEIMAETGGSGYPVVIRPSFTLGGSGGGIAYNREEFEEICKRGLDLSPT 208

Query: 164 DQLLIEQYVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IP 220
            +LLIE+ + G  E    V+ D + + +   ++   D           +S  V PA+ + 
Sbjct: 209 RELLIEESLLGWKEYEMEVVRDRADNCIIVCSIENLDPMGVHT----GDSITVAPAQTLT 264

Query: 221 LDIYKEVQRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
              Y+ ++  +    + IG   G S   F  +P   ++  +E+N 
Sbjct: 265 DKEYQILRNASLAVLREIGVDTGGSNVQFSINPRDGRMVVIEMNP 309


>gi|162218056|ref|YP_620694.2| carbamoyl phosphate synthase large subunit [Burkholderia
           cenocepacia AU 1054]
 gi|162227934|ref|YP_834937.2| carbamoyl phosphate synthase large subunit [Burkholderia
           cenocepacia HI2424]
          Length = 1084

 Score = 66.3 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 26/203 (12%), Positives = 73/203 (35%), Gaps = 13/203 (6%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQHLISPPYV 129
           LE   +P   +       + D+ R ++++   G+   P+         +     I  P V
Sbjct: 655 LEAHGVPIVGTSPDMIDAAEDRERFQKLLQDLGLRQPPNRTARAEDEALALADEIGYPLV 714

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++ + + +   + ++   ++   +L+++++ D IE     + D    
Sbjct: 715 VRPSYVLGGRAMEIVHEPRDLERYMREAVKVSNDSPVLLDRFLNDAIECDVDCICDGEAV 774

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                +   +       +S  ++  + P  +  +   E++R      +A+   G+    F
Sbjct: 775 FIGGVMEHIEQAGV---HSGDSACSLPPYSLSKETVAELKRQTGAMAKALNVVGLMNVQF 831

Query: 249 LFD-------PLSRKVFWLEINV 264
                          ++ LE+N 
Sbjct: 832 AIQQVPQADGSKQDIIYVLEVNP 854



 Score = 64.8 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 49/285 (17%), Positives = 97/285 (34%), Gaps = 42/285 (14%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +              DV          V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYKVVLVNSNPATIMTDPNTADVTYIEPITWEVVARIIEKERPDAILP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      +LE   +    +   A   + D+ + K+ ++  G+    S +
Sbjct: 89  TMGGQTALNCALDLHHHGVLEKFGVELIGASPEAIDKAEDRQKFKEAMTKIGLGSAKSGI 148

Query: 113 ---------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
                    V+   M        P VI+P       G  +    +       +    +  
Sbjct: 149 AHSMEEATKVHAEIMAETGGSGYPVVIRPSFTLGGSGGGIAYNREEFEEICKRGLDLSPT 208

Query: 164 DQLLIEQYVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IP 220
            +LLIE+ + G  E    V+ D + + +   ++   D           +S  V PA+ + 
Sbjct: 209 RELLIEESLLGWKEYEMEVVRDRADNCIIVCSIENLDPMGVHT----GDSITVAPAQTLT 264

Query: 221 LDIYKEVQRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
              Y+ ++  +    + IG   G S   F  +P   ++  +E+N 
Sbjct: 265 DKEYQILRNASLAVLREIGVDTGGSNVQFSINPRDGRMVVIEMNP 309


>gi|304313040|ref|YP_003812638.1| Putative acyl-CoA carboxylase alpha chain protein [gamma
           proteobacterium HdN1]
 gi|301798773|emb|CBL47006.1| Putative acyl-CoA carboxylase alpha chain protein [gamma
           proteobacterium HdN1]
          Length = 673

 Score = 66.3 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 75/221 (33%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H  +G   E+    A  E   I +      + +    K  +K ++    VP+ P    
Sbjct: 83  AIHPGYGFLSENPQFAAACETAGIKFIGPSSRSISAMGSKSAAKLIMEKAAVPLIPGYHG 142

Query: 113 ---VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
               + F       I  P +IK   GG   G+ V++  +     L               
Sbjct: 143 DNQGDAFLHQQADRIGYPLLIKAAFGGGGKGMRVVEASEHFLEALQSCRREGQASFGNPT 202

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           +L+E+Y+     +   V  D   +   +            K          PA  +  + 
Sbjct: 203 VLLEKYLTQPRHVEIQVFCDQHGNGVYLHERDCSIQRRHQK-----IIEEAPAPGLSSET 257

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            K +   A  A +AI   G    +FL+D +  + +++E+N 
Sbjct: 258 RKAMGEAAVAAARAIDYEGAGTIEFLYD-VDGRFYFMEMNT 297


>gi|268590770|ref|ZP_06124991.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Providencia
           rettgeri DSM 1131]
 gi|291313546|gb|EFE53999.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Providencia
           rettgeri DSM 1131]
          Length = 448

 Score = 66.3 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 78/222 (35%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         L  DK+ +   +   GVP  P    
Sbjct: 77  AIHPGYGFLAENADFAEQVENSGFVFIGPKAETIRLMGDKVSAINAMKKAGVPCVPGSDG 136

Query: 112 ---LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
                          I  P +IK   GG   G+ V++ ++ +   +     ++ S  + D
Sbjct: 137 PLGNDTEKNKAIAKRIGFPVIIKASGGGGGRGMRVVRNEKDLESSINLTRAEAKSAFNND 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E++++    +   VM D       +A           K          PA  I  +
Sbjct: 197 MVYMEKFLENPRHIEIQVMADGQGHAVYLAERDCSMQRRHQK-----VVEEAPAPGITPE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           I + +      A   IG RG    +FLF   + + +++E+N 
Sbjct: 252 IRRNIGERCANACIEIGYRGAGTFEFLF--ENGEFYFIEMNT 291


>gi|221067806|ref|ZP_03543911.1| Carbamoyl-phosphate synthase L chain ATP-binding [Comamonas
           testosteroni KF-1]
 gi|220712829|gb|EED68197.1| Carbamoyl-phosphate synthase L chain ATP-binding [Comamonas
           testosteroni KF-1]
          Length = 657

 Score = 66.3 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 38/215 (17%), Positives = 77/215 (35%), Gaps = 15/215 (6%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI----LVN 114
           +G   ED      ++   + +      A      K  +KQ+  + GVP           +
Sbjct: 81  YGFLSEDAGFAEAVQQAGLIWIGPPPAAIRQLGSKAAAKQLAKAHGVPCLSGYEGDDQSD 140

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGDQLLIEQ 170
               D   +I  P ++K + GG   G+ +++  Q +   L     ++ +      LL+E+
Sbjct: 141 ARFADEAAMIGYPVMVKAVAGGGGRGMRLVESAQQLHAALNSARSEALAGFGNGDLLVER 200

Query: 171 YV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
            V     +   V  D    V  +        S + ++  +      PA +  +  + +  
Sbjct: 201 AVMHPRHVEVQVFADGHGHVIHLGERD---CSVQRRHQKIIEEAPSPA-VNAEQREHMGN 256

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            A    +A G  G    +FL     R+ + +E+N 
Sbjct: 257 CAVALAKAAGYVGAGTVEFLV--EGRQFYLMEMNT 289


>gi|1865671|emb|CAA70282.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Arabidopsis
           thaliana]
          Length = 539

 Score = 66.3 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 81/220 (36%), Gaps = 18/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
           +LH  +G   E+ L   +     I +         +  DK  +++ + + GVP  P    
Sbjct: 149 MLHPGYGFLSENALFVEMCRDHGINFIGPNPDTIRVMGDKATARETMKNAGVPTVPGSDG 208

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS----IPLDLLQSSSWNHGDQ 165
            +      +   + I  P +I    GG   G+ + K+       +     ++++    D 
Sbjct: 209 LLQSTEEAVRVANEIGFPVMITATAGGGGRGMRLAKEPGEFVKLLQQAKSEAAAAFGNDG 268

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             +E++V +   +   V+ D   +V               K     S    PA +  ++ 
Sbjct: 269 CYLEKFVQNPRHIEFQVLADKFGNVVHFGERDCSIQRRNQKLLEEPS----PA-LTAELR 323

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K +   A  A  +IG  G+   +FL D      +++E+N 
Sbjct: 324 KAMGDAAVAAAASIGYIGVGTVEFLLDXR-GSFYFMEMNT 362


>gi|330822832|ref|YP_004386135.1| methylcrotonoyl-CoA carboxylase [Alicycliphilus denitrificans K601]
 gi|329308204|gb|AEB82619.1| Methylcrotonoyl-CoA carboxylase [Alicycliphilus denitrificans K601]
          Length = 664

 Score = 66.3 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 32/215 (14%), Positives = 76/215 (35%), Gaps = 14/215 (6%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV----N 114
           +G   E+      ++   + +      A     +K ++K++V + G+P  P        +
Sbjct: 90  YGFLAENADFADAVDAAGLVFIGPAGAAIRAMGNKAQAKRLVLAAGMPCIPGYQGADQGD 149

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS-----SWNHGDQLLIE 169
              + +   +  P ++K   GG   G+ ++    ++P  L  +      ++   + +L  
Sbjct: 150 AALLAAAADVGFPVMVKAAAGGGGRGMRLVPDAGALPQALASARSEAEVAFGSAELILER 209

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
             +    +   V+ D+   V  +            K             +   +   +  
Sbjct: 210 AVLAPRHVEIQVLADSHGHVIHLGERDCSVQRRHQK----VIEEAPSPAVDAALRARMGE 265

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            A  A +AIG  G    +FL D    + +++E+N 
Sbjct: 266 AAINAARAIGYIGAGTMEFLLD-RDGRFYFMEMNT 299


>gi|148555078|ref|YP_001262660.1| carbamoyl-phosphate synthase L chain, ATP-binding [Sphingomonas
           wittichii RW1]
 gi|148500268|gb|ABQ68522.1| Carbamoyl-phosphate synthase L chain, ATP-binding [Sphingomonas
           wittichii RW1]
          Length = 623

 Score = 66.3 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 39/203 (19%), Positives = 73/203 (35%), Gaps = 19/203 (9%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT----MDSQHLISPPYVIK 131
            + +  +   +      K  +K+++ + GVPV P  +               I  P +IK
Sbjct: 99  GLVWVGAPAHSIRAMGLKDAAKKLMVAAGVPVTPGYMGEDQDPAHLKAEADRIGYPVLIK 158

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQLLIEQYVDG-IELTCGVMGDAS 186
            + GG   G+  +         LL    +++S    D++LIE+Y+ G   +   V GD  
Sbjct: 159 AVAGGGGKGMRKVDASADFADALLSCQREAASSFGDDRVLIEKYILGPRHIEVQVFGDRH 218

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISR 245
             V              L+          PA  +       V   A  A +A+   G   
Sbjct: 219 GHVV-----HLFERDCSLQRRHQKVIEEAPAPGMDAATRAAVCEAAVKAAKAVDYVGAGT 273

Query: 246 SDFLFDPLSR----KVFWLEINV 264
            +F+ D        +++++E+N 
Sbjct: 274 IEFIADASEGLRADRIWFMEMNT 296


>gi|94494917|ref|ZP_01301498.1| Carbamoyl-phosphate synthase L chain, ATP-binding protein
           [Sphingomonas sp. SKA58]
 gi|94425183|gb|EAT10203.1| Carbamoyl-phosphate synthase L chain, ATP-binding protein
           [Sphingomonas sp. SKA58]
          Length = 619

 Score = 66.3 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 85/221 (38%), Gaps = 21/221 (9%)

Query: 59  HGNFGEDGLV-QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117
           +G   E+    QA+++   + +      +      K  +K +++  GVPV P  L     
Sbjct: 84  YGFLSENAAFAQAVMD-AGLVWIGPDPSSITAMGLKDAAKALMADAGVPVTPGYLGEDQD 142

Query: 118 MD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQLLIE 169
            D        I  P +IK + GG   G+ ++++ Q     LL    +++S    D +LIE
Sbjct: 143 PDRLASEAAQIGYPVLIKAVAGGGGKGMRLVEQPQDFADALLSCQREAASSFGNDHVLIE 202

Query: 170 QYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
           +Y+     +   +  D   ++              L+          PA  +  D  + +
Sbjct: 203 KYIQRPRHIEVQIFADRHGNIV-----HLFERDCSLQRRHQKVIEEAPAPGMDPDTREAL 257

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSR----KVFWLEINV 264
              A  A +A+   G    +F+ D        +++++E+N 
Sbjct: 258 CAAAVRAAKAVDYVGAGTIEFIADASEGLRADRIWFMEMNT 298


>gi|27364027|ref|NP_759555.1| carbamoyl phosphate synthase large subunit [Vibrio vulnificus
           CMCP6]
 gi|37678809|ref|NP_933418.1| carbamoyl phosphate synthase large subunit [Vibrio vulnificus
           YJ016]
 gi|320157410|ref|YP_004189789.1| carbamoyl-phosphate synthase large chain [Vibrio vulnificus
           MO6-24/O]
 gi|31340016|sp|Q8DEM2|CARB_VIBVU RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|71152356|sp|Q7MNU0|CARB_VIBVY RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|27360144|gb|AAO09082.1| Carbamoyl-phosphate synthase large chain [Vibrio vulnificus CMCP6]
 gi|37197550|dbj|BAC93389.1| carbamoylphosphate synthase large subunit [Vibrio vulnificus YJ016]
 gi|319932722|gb|ADV87586.1| carbamoyl-phosphate synthase large chain [Vibrio vulnificus
           MO6-24/O]
          Length = 1077

 Score = 66.3 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 35/197 (17%), Positives = 78/197 (39%), Gaps = 10/197 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH--LISPPYV 129
           LE   +P   +   A   + D+ R +Q V   G+    +  V       +    I  P V
Sbjct: 653 LEAAGVPIIGTSPDAIDRAEDRERFQQAVDRLGLLQPENATVTTMEQAVEKSREIGFPLV 712

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  +Q +     ++ S ++   +L+++++ D IE+    + D    
Sbjct: 713 VRPSYVLGGRAMEIVYDEQDLRRYFNEAVSVSNESPVLLDRFLDDAIEVDIDAICDGERV 772

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           V    +   +    +    S +S   LPA  +  +I  +++         +G RG+  + 
Sbjct: 773 VIGGIMEHIE----QAGVHSGDSACSLPAYTLSQEIQDKMREQVEKLAFELGVRGLMNTQ 828

Query: 248 FLFDPLSRKVFWLEINV 264
           F       +V+ +E+N 
Sbjct: 829 FAV--KDNEVYLIEVNP 843



 Score = 65.1 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 44/278 (15%), Positives = 95/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D D              V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPDMADATYIEPIQWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV--PVCPS 110
            + G    +  +      +L    +    +   A   + D+ R  + + S G+  P   +
Sbjct: 89  TMGGQTALNCALALEKHGVLAEFGVEMIGATADAIDKAEDRSRFDKAMKSIGLECPRADT 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                       ++  P +I+P       G  +    +       +    +  ++LLI++
Sbjct: 149 AKTMEEAYKVLDMVGFPCIIRPSFTMGGTGGGIAYNKEEFEEICRRGLDLSPTNELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + + +   ++   D           +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKADNCIIVCSIENFDPMGIHT----GDSITVAPAQTLTDKEYQLM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P   ++  +E+N 
Sbjct: 265 RNASLAVLREIGVETGGSNVQFGINPKDGRMVIIEMNP 302


>gi|105892556|gb|ABF75721.1| carbamoyl-phosphate synthase large subunit [Burkholderia
           cenocepacia AU 1054]
 gi|116647403|gb|ABK08044.1| carbamoyl-phosphate synthase large subunit [Burkholderia
           cenocepacia HI2424]
          Length = 1048

 Score = 66.3 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 26/203 (12%), Positives = 73/203 (35%), Gaps = 13/203 (6%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQHLISPPYV 129
           LE   +P   +       + D+ R ++++   G+   P+         +     I  P V
Sbjct: 619 LEAHGVPIVGTSPDMIDAAEDRERFQKLLQDLGLRQPPNRTARAEDEALALADEIGYPLV 678

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++ + + +   + ++   ++   +L+++++ D IE     + D    
Sbjct: 679 VRPSYVLGGRAMEIVHEPRDLERYMREAVKVSNDSPVLLDRFLNDAIECDVDCICDGEAV 738

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                +   +       +S  ++  + P  +  +   E++R      +A+   G+    F
Sbjct: 739 FIGGVMEHIEQAGV---HSGDSACSLPPYSLSKETVAELKRQTGAMAKALNVVGLMNVQF 795

Query: 249 LFD-------PLSRKVFWLEINV 264
                          ++ LE+N 
Sbjct: 796 AIQQVPQADGSKQDIIYVLEVNP 818



 Score = 55.9 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 42/252 (16%), Positives = 89/252 (35%), Gaps = 23/252 (9%)

Query: 32  KVSQIDVD--RSVGLVLAHLKPDLAFNVLHGNFGEDGLV----QAILELLEIPYTHSGIL 85
            V+ I+      V  ++   +PD     + G    +  +      +LE   +    +   
Sbjct: 26  DVTYIEPITWEVVARIIEKERPDAILPTMGGQTALNCALDLHHHGVLEKFGVELIGASPE 85

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSIL---------VNRFTMDSQHLISPPYVIKPLKGG 136
           A   + D+ + K+ ++  G+    S +         V+   M        P VI+P    
Sbjct: 86  AIDKAEDRQKFKEAMTKIGLGSAKSGIAHSMEEATKVHAEIMAETGGSGYPVVIRPSFTL 145

Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLD-VTEIAV 194
              G  +    +       +    +   +LLIE+ + G  E    V+ D + + +   ++
Sbjct: 146 GGSGGGIAYNREEFEEICKRGLDLSPTRELLIEESLLGWKEYEMEVVRDRADNCIIVCSI 205

Query: 195 PKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGC-RGISRSDFLFDP 252
              D           +S  V PA+ +    Y+ ++  +    + IG   G S   F  +P
Sbjct: 206 ENLDPMGVHT----GDSITVAPAQTLTDKEYQILRNASLAVLREIGVDTGGSNVQFSINP 261

Query: 253 LSRKVFWLEINV 264
              ++  +E+N 
Sbjct: 262 RDGRMVVIEMNP 273


>gi|331700753|ref|YP_004397712.1| phosphoribosylamine--glycine ligase [Lactobacillus buchneri NRRL
           B-30929]
 gi|329128096|gb|AEB72649.1| Phosphoribosylamine--glycine ligase [Lactobacillus buchneri NRRL
           B-30929]
          Length = 410

 Score = 66.3 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 35/193 (18%), Positives = 67/193 (34%), Gaps = 14/193 (7%)

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--QHLISPPYVIKPLKGGSS 138
                A+ L  DK  +K  ++   +P         F         +S P V+K     + 
Sbjct: 93  GPDESAARLESDKTFAKGFMARNNIPTAQFKTFTTFDDAEKYAESLSLPLVVKENGLAAG 152

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT-EIAVPKS 197
            G+ ++K   S  L      + +   ++LIE++++G E +  +       V   I+    
Sbjct: 153 KGVTIVK--DSADLAATIQHALDKAGEILIEEFLEGEEFSLMLFVGGDKKVIFPISQDHK 210

Query: 198 DFYSYELKYSSLN-STHVLPAKIPLDIYKEVQR------LAFLAHQAIGCRGISRSDFLF 250
             Y  E   ++     +     I  D+     +      +A LA + +   GI     + 
Sbjct: 211 KIYEGETGPNTGGMGAYSPVPHITQDVLDATVQKIVNPTMAGLAKEDLEFAGIIYIGCML 270

Query: 251 DPLSRKVFWLEIN 263
                KV  +E N
Sbjct: 271 TKQGPKV--IEYN 281


>gi|302834651|ref|XP_002948888.1| hypothetical protein VOLCADRAFT_89214 [Volvox carteri f.
           nagariensis]
 gi|300266079|gb|EFJ50268.1| hypothetical protein VOLCADRAFT_89214 [Volvox carteri f.
           nagariensis]
          Length = 572

 Score = 66.3 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 40/223 (17%), Positives = 90/223 (40%), Gaps = 38/223 (17%)

Query: 71  ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTMDSQHLISPPY 128
           + E L +P   +   A   + DK  ++++++  G+P      ++       +   +  P 
Sbjct: 228 LAEKLGLP--CNTPEAVDNARDKHATREIMARAGLPTPKHYKVVSEADVAKAAAHVGFPA 285

Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDL-----------LQSSSWNHGD------------- 164
           VIKP+ G +S+G+I    ++ +               + + +   GD             
Sbjct: 286 VIKPISGAASIGVIRANNEEDLLKAFRKVQHDMSRARIVAGALVEGDDEGSDAAGNAGGW 345

Query: 165 ---QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL 221
              +L++E+Y+DG E+ C ++ D    V        D +     Y +   ++  P+ +P 
Sbjct: 346 IHLELMVEEYLDGHEVDCDLIFDNGRPVYGAIT---DNWPTVEPYFNETGSN-CPSVLPK 401

Query: 222 DIYKEVQRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEIN 263
               E+  L+  A Q++G + G+   +  +     +   +E+N
Sbjct: 402 AHQIELLELSVRAVQSLGFKLGVFHVECKYTSRGAR--LIEVN 442


>gi|312200566|ref|YP_004020627.1| pyruvate carboxylase [Frankia sp. EuI1c]
 gi|311231902|gb|ADP84757.1| pyruvate carboxylase [Frankia sp. EuI1c]
          Length = 1126

 Score = 66.3 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 40/248 (16%), Positives = 88/248 (35%), Gaps = 24/248 (9%)

Query: 30  GFKVS-QIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGIL 85
           G  V   +D+D  +  V  H + D     LH  +G   E   +        I +      
Sbjct: 54  GHPVRGYLDIDE-LLRVAKHAEVD----ALHPGYGFLSESAALAEACGAAGITFVGPPPA 108

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPS---ILVNRFTMDSQHLISPPYVIKPLKGGSSLGII 142
              L+ DK+ ++    + G+PV  +   +      + +   +  P  +K   GG   G+ 
Sbjct: 109 VLRLTGDKVAARDAAIAAGLPVLRASAPLPNGDGAVAAAEEVGFPLFVKASAGGGGRGLR 168

Query: 143 VIKKDQSIP----LDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKS 197
            + +   +P      + ++++      + +EQ VD    +   V+GD++  V        
Sbjct: 169 RVARAADLPDAVGSAVREAAAAFGDGTVFLEQAVDRPRHIEVQVLGDSTGAVV-----HL 223

Query: 198 DFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256
                 ++        + PA  +  ++   +   A    + +G       +FL      +
Sbjct: 224 FERDCSVQRRHQKVVEIAPAPALDPEVRDGLCDAAVRFAKHVGYVNAGTVEFLV-GADGR 282

Query: 257 VFWLEINV 264
             ++E+N 
Sbjct: 283 YTFMEMNP 290


>gi|159037472|ref|YP_001536725.1| carbamoyl-phosphate synthase, large subunit [Salinispora arenicola
           CNS-205]
 gi|157916307|gb|ABV97734.1| carbamoyl-phosphate synthase, large subunit [Salinispora arenicola
           CNS-205]
          Length = 1115

 Score = 66.3 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 59/287 (20%), Positives = 101/287 (35%), Gaps = 44/287 (15%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG      L + G +VS +         D +              V LV+A  +PD    
Sbjct: 29  SGTQACRVLRNEGIRVSLVNSNPATIMTDPEFADATYVEPITPEFVELVIAKERPDAVLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC---P 109
            L G    +  V      +LE   +    + I A     D+   K +V+  GV +    P
Sbjct: 89  TLGGQTALNTAVALHEAGVLEKYGVELIGANIDAIRRGEDRQLFKDIVAKAGVRIGVEDP 148

Query: 110 SILVNRFTM--------DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN 161
           + LV R  +        D+   +  P VI+P      LG  +   D  +        + +
Sbjct: 149 AALVPRSRVCHSMDEVRDTIAELGLPAVIRPSFTMGGLGSGMAHTDADLERIAGAGLAAS 208

Query: 162 HGDQLLIEQYVDG-IELTCGVMGDASL-DVTEIAVPKSDFYSYELKYSSLNSTHVLPAK- 218
              ++LIE+ V G  E    +M D     V   ++   D           +S  V PA  
Sbjct: 209 PVHEVLIEESVLGWKEYELELMRDRHDNVVVVCSIENVDPMGVHT----GDSVTVAPAMT 264

Query: 219 IPLDIYKEVQRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
           +    Y+ ++ L     + +G   G     F  +P+  ++  +E+N 
Sbjct: 265 LTDREYQRMRDLGIAVLREVGVDTGGCNIQFAVNPVDGRIVVIEMNP 311



 Score = 52.4 bits (125), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 30/196 (15%), Positives = 77/196 (39%), Gaps = 7/196 (3%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ--HLISPPYV 129
           L+   +P   +   +  L+ ++     +++  G+          +         I  P +
Sbjct: 671 LKDAGLPVVGTSPESIHLAEERGAFGALLARAGLRAPAHGTATSYDEARAIADEIGYPVL 730

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P       G+ ++  D ++   + +++  +    +L+++++ D IE+    + DA+ +
Sbjct: 731 VRPSYVLGGRGMEIVYDDATLRDYIGRATDISPDHPVLVDRFLDDAIEIDVDALCDATGE 790

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           V    V   +       +S  +S  + P  +      EV+R      + IG RG+    +
Sbjct: 791 VYLGGV--MEHIEEAGIHSGDSSCALPPITLAGSHVAEVRRYTEAIARGIGVRGLLNVQY 848

Query: 249 LFDPLSRKVFWLEINV 264
                  +++ LE N 
Sbjct: 849 AL--KDDQLWVLEANP 862


>gi|24375113|ref|NP_719156.1| phosphoribosylglycinamide formyltransferase 2 [Shewanella
           oneidensis MR-1]
 gi|24349878|gb|AAN56600.1|AE015797_11 phosphoribosylglycinamide formyltransferase 2 [Shewanella
           oneidensis MR-1]
          Length = 378

 Score = 66.3 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 47/280 (16%), Positives = 101/280 (36%), Gaps = 51/280 (18%)

Query: 19  GKACASALEDAGFKVSQID--------------------VDRSVGLVLAHLKPDLAFNVL 58
           GK  A  L+  G +V  +D                      +++  V+   KP L    +
Sbjct: 9   GKEVAIELQRLGVEVIGVDRYPNAPAMQIAHRSHVINMLDAKALRAVIELEKPHLVIPEI 68

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASA----LSMDKM-RSKQVVSSCGVPVCPSILV 113
                E    Q ++E+         ++ +A    L+MD+    +    + G+P  P    
Sbjct: 69  -----EAIATQTLVEMEA---EGLNVVPTARATKLTMDREGIRRLAAETLGLPTSPYFFC 120

Query: 114 NRFTMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLD--LLQSSSWNHGDQLLIE 169
           +  T  +Q +  I  P V+KP+   S  G  VI+            Q      G ++++E
Sbjct: 121 DTETEFNQAISKIGVPCVVKPVMSSSGKGQSVIRNVAQSAKAWQYAQEGGRAGGGRVIVE 180

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVP---KSDFYSYELKYSSLNSTHVLPAKIPLDIYKE 226
            ++   +    ++  ++++      P   + +   Y   +         P  +  D+  +
Sbjct: 181 GFIP-FDYEITLLTISAVNGIHFCAPIGHRQEDGDYRESW--------QPQAMSADVLAK 231

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
            Q +A    +A+G  G+   +         V++ E++ +P
Sbjct: 232 SQAIASKVVEALGGYGLFGVELFVKGSD--VYFSEVSPRP 269


>gi|304407629|ref|ZP_07389281.1| ATP-dependent carboxylate-amine ligase domain protein ATP-grasp
           [Paenibacillus curdlanolyticus YK9]
 gi|304343580|gb|EFM09422.1| ATP-dependent carboxylate-amine ligase domain protein ATP-grasp
           [Paenibacillus curdlanolyticus YK9]
          Length = 418

 Score = 66.3 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 46/214 (21%), Positives = 80/214 (37%), Gaps = 27/214 (12%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH--LISPPYV 129
           L L  +PY      A+  S +K  +++  +  GVP      V  F   +     I  P V
Sbjct: 97  LGLRGVPY-----EAALKSRNKDLAREAYAEHGVPSAAFRKVTSFDEAAAAAAEIGYPVV 151

Query: 130 IKPLKGGSSLGIIVIKKDQSIPL--DLLQSSS-----WNHGDQLLIEQYVDGIELTCGVM 182
           +KP    SS  +  I  +  +    + +         +   +  LIEQY+ G E +  + 
Sbjct: 152 LKPTNCASSQHVFFIHNEVELRKSFEAIVEFKVTYMDFKVREDYLIEQYLQGPEFSVELF 211

Query: 183 ---GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
              G+A        +     Y        + + H LP+    +   ++ R+A  A +AIG
Sbjct: 212 LQQGEAIFAAVTEKLTTPLPY-------FVETFHTLPSPSYTERQDDIIRVAVEALKAIG 264

Query: 240 CR-GISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
              G S  +            +E+N +PG   +S
Sbjct: 265 LTDGPSHVEVKLTSSG--PRIIEVNGRPGGDNIS 296


>gi|300214338|gb|ADJ78754.1| Phosphoribosylaminoimidazole carboxylase NCAIR mutase subunit
           [Lactobacillus salivarius CECT 5713]
          Length = 352

 Score = 66.3 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 34/189 (17%), Positives = 85/189 (44%), Gaps = 17/189 (8%)

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL--ISPPYVIKPLKGG-SSL 139
           G     ++ D++R K  +   G+ V P   +N+F+   + +  I  P ++K  +GG    
Sbjct: 76  GTELLRITKDRIREKTFLQKSGLKVAPFAEINKFSDLEKEINEIGYPAILKTCEGGYDGK 135

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--DVTEIAVPKS 197
           G +V+  ++    DL+++       Q ++E  ++  ++ C VM   +L  ++T   V ++
Sbjct: 136 GQLVLNSEK----DLVEADEIIKLGQCILEGKIN-FQMECSVMVGRNLRGEITVFPVSEN 190

Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
                    + +    ++PA+I  ++ ++ +  A    +++   GI   +        ++
Sbjct: 191 IHR------NQILHESIVPARISSELQEKAKETAVKVAESLNLCGILGIEMFI-GEDNEI 243

Query: 258 FWLEINVQP 266
           +  E+  +P
Sbjct: 244 YINELAPRP 252


>gi|307730496|ref|YP_003907720.1| carbamoyl-phosphate synthase large subunit [Burkholderia sp.
           CCGE1003]
 gi|307585031|gb|ADN58429.1| carbamoyl-phosphate synthase, large subunit [Burkholderia sp.
           CCGE1003]
          Length = 1084

 Score = 66.3 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 26/203 (12%), Positives = 73/203 (35%), Gaps = 13/203 (6%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQHLISPPYV 129
           LE   +P   +       + D+ R ++++   G+   P+         +     I  P V
Sbjct: 655 LEANGVPIIGTSPDMIDAAEDRERFQKLLQDLGLRQPPNRTARTEDEALKLADEIGYPLV 714

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++ + + +   + ++   ++   +L+++++ D IE     + D    
Sbjct: 715 VRPSYVLGGRAMEIVHEPRDLERYMREAVKVSNDSPVLLDRFLNDAIECDVDCISDGEAV 774

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                +   +       +S  ++  + P  +  +   E++R      +A+   G+    F
Sbjct: 775 FIGGVMEHIEQAGV---HSGDSACSLPPYSLSKETVAELKRQTGAMAKALNVVGLMNVQF 831

Query: 249 LFD-------PLSRKVFWLEINV 264
                          ++ LE+N 
Sbjct: 832 AIQQVPQADGSKEDIIYVLEVNP 854



 Score = 63.2 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 49/285 (17%), Positives = 96/285 (33%), Gaps = 42/285 (14%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +              DV          V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYKVILVNSNPATIMTDPNTADVTYIEPITWEVVERIIAKERPDAILP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G    +  +      +LE  ++    +   A   + D+ + K  ++  G+    S  
Sbjct: 89  TMGGQTALNCALDLHAHGVLEKYKVELIGASPEAIDKAEDRQKFKDAMTKIGLGSAKSGT 148

Query: 111 -------ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
                  + V+            P VI+P       G  +    +       +    +  
Sbjct: 149 AHSMEEALQVHARIAAETGSGGYPVVIRPSFTLGGSGGGIAYNREEFEEICKRGLDLSPT 208

Query: 164 DQLLIEQYVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IP 220
            +LLIE+ + G  E    V+ D   + +   ++   D           +S  V PA+ + 
Sbjct: 209 RELLIEESLLGWKEYEMEVVRDKQDNCIIVCSIENLDPMGIHT----GDSITVAPAQTLT 264

Query: 221 LDIYKEVQRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
              Y+ ++  +    + IG   G S   F  +P   ++  +E+N 
Sbjct: 265 DKEYQVLRNASLAVLREIGVDTGGSNVQFSINPKDGRMIVIEMNP 309


>gi|284163581|ref|YP_003401860.1| RimK domain protein ATP-grasp [Haloterrigena turkmenica DSM 5511]
 gi|284013236|gb|ADB59187.1| RimK domain protein ATP-grasp [Haloterrigena turkmenica DSM 5511]
          Length = 290

 Score = 66.3 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 45/256 (17%), Positives = 86/256 (33%), Gaps = 27/256 (10%)

Query: 26  LEDAGFKVSQIDVDRSVGLV----LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81
           L + G +V  + V      +          D+ F V  G   E G+  A+LE   IP+ +
Sbjct: 20  LSERGIRVHHVPVRERTIALGDPPWDADDYDVGF-VYPGRLMEGGVADALLE---IPWLN 75

Query: 82  SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ-----HLISPPYVIKPLKGG 136
                   S +K      +    +PV  S+ V+    +++         PP V+KP    
Sbjct: 76  DHETVLT-SRNKAEVLARLGRADLPVPESVYVSNDVGEAELTDVFERFEPPVVVKPNSTT 134

Query: 137 SSLGIIVIKKDQSIP-----LDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVT 190
             +G+       S       L L+           L+++Y+ D  +    V+    +   
Sbjct: 135 RGVGVAKAHDLDSFLGICDYLSLVHDYKATGDQSFLVQEYLPDATDYRVMVLEGEYVGAV 194

Query: 191 EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
           E  +P       + K++          ++P +     + LA     A+    +   D   
Sbjct: 195 ERRLPDEAVAEGQWKHNVHRGAEATGVELPDE----YRELAERVAAALEIPFLG-VD--L 247

Query: 251 DPLSRKVFWLEINVQP 266
                ++   E N +P
Sbjct: 248 LETDDRLVVNETNARP 263


>gi|77165038|ref|YP_343563.1| S6 modification enzyme RimK [Nitrosococcus oceani ATCC 19707]
 gi|254434333|ref|ZP_05047841.1| alpha-L-glutamate ligase, RimK family [Nitrosococcus oceani AFC27]
 gi|84029427|sp|Q3JAW3|RIMK_NITOC RecName: Full=Ribosomal protein S6 modification protein
 gi|76883352|gb|ABA58033.1| SSU ribosomal protein S6P modification protein [Nitrosococcus
           oceani ATCC 19707]
 gi|207090666|gb|EDZ67937.1| alpha-L-glutamate ligase, RimK family [Nitrosococcus oceani AFC27]
          Length = 301

 Score = 66.3 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 56/291 (19%), Positives = 109/291 (37%), Gaps = 49/291 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50
           +AVL       R   L S +    A +  G +V  +DV R    + +H            
Sbjct: 3   IAVLS------RNAKLYSTRRLVEAAKTRGHEVRVLDVLRCYMNIASHRPSIHYKGEDLT 56

Query: 51  -PDLAFN------VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103
             D            +G       V    E++ + Y  S  +A   S DK+RS Q+++  
Sbjct: 57  GFDAVIPRIGASVTFYGT-----AVLRQFEMIGV-YPLSESVAITRSRDKLRSLQLLARK 110

Query: 104 GV--PVCPSILVNRFTMDSQHLISP-PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160
           G+  PV           D   ++   P VIK L+G   +G+++ +  ++     +  +  
Sbjct: 111 GIGLPVTGFAHAPDEIDDLIKMVGGAPVVIKLLEGTQGIGVVLAENKKAAQS--VIEAFM 168

Query: 161 NHGDQLLIEQYVD---GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
                +L+++++    G ++ C ++GD  +   +   P+ +F S   +  S +   + P 
Sbjct: 169 GLKTHILVQEFIKETAGSDIRCFIIGDKVVAAMKRQAPEGEFRSNLHRGGSASLVRITPE 228

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268
           +         +  A  A Q +G       D      +     +E+N  PG+
Sbjct: 229 E---------RSTAIRAAQTMGLNVAG-VD--ILRSNHGPLVMEVNSSPGL 267


>gi|117923700|ref|YP_864317.1| carbamoyl-phosphate synthase L chain, ATP-binding [Magnetococcus
           sp. MC-1]
 gi|117607456|gb|ABK42911.1| biotin carboxylase / biotin carboxyl carrier protein [Magnetococcus
           sp. MC-1]
          Length = 652

 Score = 66.3 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 34/234 (14%), Positives = 74/234 (31%), Gaps = 15/234 (6%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
             +  V+     D      +G   E+      L+ + + +      A     DK+ SK++
Sbjct: 63  DKLLEVIKQCGADGVHPG-YGFLSENSTFCRRLQEMGVIFIGPNPTAIDAMGDKISSKKL 121

Query: 100 VSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL--- 152
             +  V   P  +      D        I  P ++K   GG   G+ +   D        
Sbjct: 122 AQAANVNTIPGHMGIIENADEAVRIAAEIGYPVMLKASAGGGGKGMRIAHNDAEAAEGWQ 181

Query: 153 -DLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLN 210
               +  S+    ++ IE++++    +   V+ D   +   +   +        K     
Sbjct: 182 SATNEGLSYFGDGRVFIEKFIENPRHIEIQVLCDGHGNGVYLNERECSIQRRNQK----V 237

Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
                   +  D+ + +   A    QA+        +F      +  ++LE+N 
Sbjct: 238 IEEAPSPFVDADMRRAMGEQALALAQAVDYVSAGTIEF-VVGADKGFYFLEMNT 290


>gi|325982939|ref|YP_004295341.1| phosphoribosylglycinamide formyltransferase 2 [Nitrosomonas sp.
           AL212]
 gi|325532458|gb|ADZ27179.1| Phosphoribosylglycinamide formyltransferase 2 [Nitrosomonas sp.
           AL212]
          Length = 404

 Score = 66.3 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 39/279 (13%), Positives = 92/279 (32%), Gaps = 35/279 (12%)

Query: 19  GKACASALEDAGFKVSQID--------------------VDRSVGLVLAHLKPDLAFNVL 58
           GK    AL+  G +   +D                      +++  ++   +PD+    +
Sbjct: 28  GKEVIIALQRLGVETIAVDRYADAPGHQVAHRAHVINMADGQALRALIERERPDIIVPEI 87

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKM-RSKQVVSSCGVPVCPSILVNRFT 117
                 D LV+  +E + +        A+ L+M++         + G+P  P +  N   
Sbjct: 88  EAI-ATDMLVE--IEQMGMAAVIPTARAAKLTMNREGIRCLAAETLGLPTSPYVFANSLD 144

Query: 118 MDSQHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH--GDQLLIEQYV 172
                +   I  P ++KP+   S  G   I+    I      ++S +     ++++E  +
Sbjct: 145 ELRAAIDGKIGYPCIVKPVMSSSGKGQSRIENADEIEAAWHYAASGSRVNQGRVIVEGVI 204

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
              +     +   +L                ++          P  +     +  + +A 
Sbjct: 205 H-FDYEITQLTVRALGADGSVKTHFCEAIGHVQVQGDYVESWQPQGMSPIALERAREMAK 263

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP---GM 268
                +G  G+   +        +V++ E++ +P   GM
Sbjct: 264 KITDDLGGLGVFGVELFI--KGDEVWFSEVSPRPHDTGM 300


>gi|322368420|ref|ZP_08042989.1| carbamoyl phosphate synthase large subunit [Haladaptatus
           paucihalophilus DX253]
 gi|320552436|gb|EFW94081.1| carbamoyl phosphate synthase large subunit [Haladaptatus
           paucihalophilus DX253]
          Length = 1045

 Score = 66.3 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 45/300 (15%), Positives = 106/300 (35%), Gaps = 40/300 (13%)

Query: 18  SGKACASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLV 68
           S  A   AL + G +   +         D D S GL    +  +   +V+      DG++
Sbjct: 588 SVHAV-RALREMGIEAHVVNNNPETVSTDYDTSDGLFFEPITAEEVADVIEATNA-DGVM 645

Query: 69  -----QAILEL------------LEIPYTHSGILASALSMDKMRSKQVVSSCGV--PVCP 109
                Q  +++            L+     + + A  L+ D+ R  +++   G+  P   
Sbjct: 646 VQFGGQTSVDIGHPLEEELERRDLDCKVLGTTVDAMDLAEDRDRFNRLMDDLGIEQPTGG 705

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
           S       ++  H I  P +++P        + ++  D  +   + ++   +    +L++
Sbjct: 706 SATSEEEALELAHDIGYPVLVRPSYVLGGRAMDIVYDDDELTEYIEEAVRVSPDKPILVD 765

Query: 170 QYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           +++ D +EL    + D    V    +   +       +S  ++  +    +  +    V+
Sbjct: 766 EFLADAVELDVDAVSDGENIVIGGIMEHVESAGV---HSGDSACMIPTRSLSEETLSRVR 822

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
            +     +A+   G+   +         V+ LE N +   T     P ++   G    +L
Sbjct: 823 DVTEDIARALDTVGL--LNVQLAVQDGTVYVLEANPRSSRT----VPFVSKATGVPIAKL 876



 Score = 57.1 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 47/306 (15%), Positives = 107/306 (34%), Gaps = 55/306 (17%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQID---------------------VDRSVGLV 45
           G ++E + S   G     AL++ G +V  ++                        ++  +
Sbjct: 21  GQAAEFDYS---GAQACRALQEEGARVVLVNSNPATIMTDPEMADEVYIEPITTEAIAEI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   +PD     L G  G +   +     IL+  ++    + +     + D+   ++ + 
Sbjct: 78  IRKERPDGVIAGLGGQTGLNVTAELSEEGILDEYDVEIMGTPLDTIYATEDRDLFRERMQ 137

Query: 102 SCGVPVCPSILVN-----------------RFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
             G P+  S  +                  R     + +   P + +        G  V+
Sbjct: 138 DLGQPMPRSTTITLDEGESVTELDEDALGERVEEAVETVGGLPVISRTTYTLGGSGSGVV 197

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIA-VPKSDFYSY 202
            +   +   + +    +  +++LI + ++G +EL   VM DA      I  +   D    
Sbjct: 198 HEMDELKERVRKGLRLSRNNEVLITESIEGWVELEYEVMRDADDSCIIICNMENLDPMGI 257

Query: 203 ELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL---SRKVF 258
                   ST V P++ IP + ++E++ +A    + +G +G     F +        +  
Sbjct: 258 HT----GESTVVTPSQVIPDEGHQEMRDVALEVIRDLGIQGGCNIQFAWHDDGTPGGEYR 313

Query: 259 WLEINV 264
            +E+N 
Sbjct: 314 VVEVNP 319


>gi|319442871|ref|ZP_07992027.1| acyl-CoA carboxylase, alpha subunit [Corynebacterium variabile DSM
           44702]
          Length = 591

 Score = 66.3 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 74/220 (33%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+      +E   + +      A     DK+ ++        P+ P    
Sbjct: 83  AVHPGYGFLSENADFAQAVEDAGLIWIGPSPRAIRELGDKVTARHYAEKVDAPMAPGTPE 142

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSWNHGDQ 165
            +   +  +D       P  IK   GG   G+ V    + IP        ++       +
Sbjct: 143 PVADAQEIVDFATEHGLPVAIKAAFGGGGRGMKVAHTVEEIPELFGAATREAEKAFGRGE 202

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             +E+Y+D    + C V+ D   +V    V  +   S + ++  L         +  +  
Sbjct: 203 CFVERYLDRARHVECQVLADTHGNVV---VASTRDCSLQRRFQKL-VEEAPAPFLTAEQD 258

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             ++  A    +  G  G    ++L       + +LE+N 
Sbjct: 259 ARLRESAKAILREAGYHGAGTVEYLV-GSDGLISFLEVNT 297


>gi|260767851|ref|ZP_05876786.1| glutathione synthase/Ribosomal protein S6 modification enzyme
           (glutaminyl transferase) [Vibrio furnissii CIP 102972]
 gi|260617360|gb|EEX42544.1| glutathione synthase/Ribosomal protein S6 modification enzyme
           (glutaminyl transferase) [Vibrio furnissii CIP 102972]
 gi|315179318|gb|ADT86232.1| ribosomal protein S6 modification protein [Vibrio furnissii NCTC
           11218]
          Length = 301

 Score = 66.3 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 60/321 (18%), Positives = 124/321 (38%), Gaps = 50/321 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + +L       R  SL S K    A +  G +V  ID  R   + +   KP++ F     
Sbjct: 3   IGILS------RNSSLYSTKRLIEACKQRGHEVKVIDALR-CYMNINSEKPEIHFKG-EE 54

Query: 61  NFGEDGLVQAI--------------LELLEIPYTHSGILASALSMDKMRSKQVVSSCGV- 105
             G D ++  I               E++ +   +  +  S  S DK+RS Q++S  G+ 
Sbjct: 55  LSGFDAVIPRIGASVTFYGTAVLRQFEMMGVYPVNESVAISR-SRDKLRSMQLLSRKGIG 113

Query: 106 -PVCPSILVNRFTMDSQHLISP-PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
            P+           D   ++   P VIK L+G   +G+++ +  ++     +  +     
Sbjct: 114 MPITGFASKPDDVKDLLDMVGGAPVVIKLLEGTQGIGVVLAETRKAAES--VIEAFMGLK 171

Query: 164 DQLLIEQYVD---GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
             +++++Y+    G ++ C V+GD  +   +    + +F S   +  + +   + P +  
Sbjct: 172 ANIMVQEYIKEAGGADIRCFVIGDKVIAAMKRQGAEGEFRSNLHRGGTASLVKITPQE-- 229

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280
                  ++ A  A + +G       D       R    +E+N  PG+  +       A 
Sbjct: 230 -------RKTAIDAAKIMGLNVAG-VD--LLRSERGPLVMEVNSSPGLEGI------EAA 273

Query: 281 AGYSFRELLLWMVE-DASCLR 300
            G     +++  +E +A+  R
Sbjct: 274 TGKDIAGMIVEFIEKNAASKR 294


>gi|227890582|ref|ZP_04008387.1| phosphoribosylaminoimidazole carboxylase ATPase subunit
           [Lactobacillus salivarius ATCC 11741]
 gi|227867520|gb|EEJ74941.1| phosphoribosylaminoimidazole carboxylase ATPase subunit
           [Lactobacillus salivarius ATCC 11741]
          Length = 370

 Score = 66.3 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 34/189 (17%), Positives = 85/189 (44%), Gaps = 17/189 (8%)

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL--ISPPYVIKPLKGG-SSL 139
           G     ++ D++R K  +   G+ V P   +N+F+   + +  I  P ++K  +GG    
Sbjct: 94  GTELLRITKDRIREKTFLQKSGLKVAPFAEINKFSDLEKEINEIGYPAILKTCEGGYDGK 153

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--DVTEIAVPKS 197
           G +V+  ++    DL+++       Q ++E  ++  ++ C VM   +L  ++T   V ++
Sbjct: 154 GQLVLNSEK----DLVEADEIIKLGQCILEGKIN-FQMECSVMVGRNLRGEITVFPVSEN 208

Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
                    + +    ++PA+I  ++ ++ +  A    +++   GI   +        ++
Sbjct: 209 IHR------NQILHESIVPARISSELQEKAKETAVKVAESLNLCGILGIEMFI-GEDNEI 261

Query: 258 FWLEINVQP 266
           +  E+  +P
Sbjct: 262 YINELAPRP 270


>gi|148261365|ref|YP_001235492.1| acetyl-CoA carboxylase biotin carboxylase subunit [Acidiphilium
           cryptum JF-5]
 gi|146403046|gb|ABQ31573.1| acetyl-CoA carboxylase, biotin carboxylase [Acidiphilium cryptum
           JF-5]
          Length = 448

 Score = 66.3 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 75/220 (34%), Gaps = 18/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     ++E   + +         +  DK+ +K  ++  GVP+ P    
Sbjct: 79  AVHPGYGFLSENADFAEMVEAHGLAFIGPSPTHIRMMGDKITAKTTMADLGVPLVPGSDG 138

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGDQ 165
            +            I  P +IK   GG   G+ V +    +         ++ +    + 
Sbjct: 139 EVPDVEAAKRVAAEIGCPVLIKAAAGGGGRGMKVARTLDEVEEAFRTARAEAGAAFGNNA 198

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+Y+D    +   V+GD   +V               K      +      I  +  
Sbjct: 199 VYIEKYLDRPRHVELQVLGDNHGNVVHFGERDCSLQRRHQKLLEEAGS----PGITREER 254

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +  +A  A    G R     +FL+     +  ++E+N 
Sbjct: 255 DRLGEIATAALTKFGYRNAGTLEFLY--QDGQFAFIEMNT 292


>gi|111018927|ref|YP_701899.1| methylcrotonoyl-CoA carboxylase, alpha chain [Rhodococcus jostii
           RHA1]
 gi|110818457|gb|ABG93741.1| probable methylcrotonoyl-CoA carboxylase, alpha chain [Rhodococcus
           jostii RHA1]
          Length = 669

 Score = 66.3 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 43/228 (18%), Positives = 82/228 (35%), Gaps = 30/228 (13%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      +    + +      A  +   K+ SK+++++ GVPV     +
Sbjct: 77  AIHPGYGFLSENADFARAVHEAGLTWIGPPAPAIEMMGSKVESKKMMAAAGVPV-----L 131

Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQLLIE 169
                D+      P ++K   GG   G+ V+++   +P  L  +            +  E
Sbjct: 132 TELDPDAVTEADLPVLVKASAGGGGRGMRVVRELADLPEQLEGARREAQSAFGDPTVFCE 191

Query: 170 QYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI---YK 225
           +Y++ G  +   VM D    V  +   +        K          P+ +   +    +
Sbjct: 192 RYLETGRHIEVQVMADRHGTVWAVGERECSIQRRHQK-----VVEEAPSPLVDAVPGMRE 246

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLF---------DPLSRKVFWLEINV 264
            +   A LA +AI   G    +FL          DP     F+LE+N 
Sbjct: 247 RLFEAARLAAKAIDYEGAGTVEFLASGRAERGGDDPDQGNFFFLEMNT 294


>gi|327393291|dbj|BAK10713.1| ribosomal protein S6 modification protein RimK [Pantoea ananatis
           AJ13355]
          Length = 300

 Score = 66.3 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 40/203 (19%), Positives = 85/203 (41%), Gaps = 21/203 (10%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGV--PVCPSILVNRFTMDSQHLISP-PY 128
            E+    Y  +   A   + DK+RS Q+++  G+  PV         T D   ++   P 
Sbjct: 80  FEMCG-SYPLNESAAVTRARDKLRSLQLLARDGIDMPVTGFASSPDDTQDLIAMVGGAPL 138

Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV---DGIELTCGVMGDA 185
           V+K ++G   +G+++ +  Q+     +  +       +L+++++    G ++ C V+GD 
Sbjct: 139 VVKLVEGTQGIGVVLAETRQAAES--VIDAFRGLNAHILVQEFIQEARGRDVRCLVIGDR 196

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
            +   E    + DF S   +     +          DI ++ + +A  A   +G   ++ 
Sbjct: 197 VVAAIERQAKEGDFRSNLHRGGKACTV---------DISEQEREMAVKAAAVLGL-DVAG 246

Query: 246 SDFLFDPLSRKVFWLEINVQPGM 268
            D      +R    +E+N  PG+
Sbjct: 247 VD--ILRSARGPLVMEVNASPGL 267


>gi|309379471|emb|CBX21837.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 1071

 Score = 66.3 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 50/278 (17%), Positives = 101/278 (36%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +              DV        ++V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYKVILVNSNPATIMTDPEMADVTYIEPIMWQTVEKIIAKERPDAILP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      +L    +    +   A   + D+ R K+ +   G+    S +
Sbjct: 89  TMGGQTALNCALDLARNGVLAKYNVELIGATEDAIDKAEDRGRFKEAMEKIGLSCPKSFV 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     + +Q  +  P +I+P       G  +            +    +   +LLIEQ
Sbjct: 149 CHTMNEALAAQEQVGFPTLIRPSFTMGGSGGGIAYNKDEFLAICERGFDASPTHELLIEQ 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            V G  E    V+ D + +   I   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SVLGWKEYEMEVVRDKNDNCIIICSIEN----FDPMGVHTGDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RNASLAVLREIGVDTGGSNVQFAVNPENGEMIVIEMNP 302



 Score = 66.3 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 28/192 (14%), Positives = 73/192 (38%), Gaps = 8/192 (4%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYVIKPL 133
            +    +   +   + D+ R ++V++  G+   P+ + +           I  P V++P 
Sbjct: 652 GVNIIGTSADSIDAAEDRERFQKVLNDLGLRQPPNRIAHNEEEALVKAEEIGYPLVVRPS 711

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEI 192
                  + ++   +++   + ++   +    +L++ ++ + IE+    + D    V   
Sbjct: 712 YVLGGRAMQIVHSTEALQKYMREAVQVSEDSPVLLDFFLNNAIEVDVDCVSDGKDVVIGG 771

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            +   +       +S  +   + P  +  +I  E++R       A+G  G+    F    
Sbjct: 772 IMQHVEQAGI---HSGDSGCSLPPYSLSEEIQDEIRRQTKAMAYALGVIGLMNVQFAV-- 826

Query: 253 LSRKVFWLEINV 264
               VF LE+N 
Sbjct: 827 QDGVVFVLEVNP 838


>gi|148380681|ref|YP_001255222.1| putative carbamoyl phosphate synthase large subunit [Clostridium
           botulinum A str. ATCC 3502]
 gi|153931646|ref|YP_001384965.1| carbamoyl phosphate synthase-like protein [Clostridium botulinum A
           str. ATCC 19397]
 gi|153935240|ref|YP_001388435.1| carbamoyl phosphate synthase-like protein [Clostridium botulinum A
           str. Hall]
 gi|226950135|ref|YP_002805226.1| ATP domain protein [Clostridium botulinum A2 str. Kyoto]
 gi|148290165|emb|CAL84284.1| conserved hypothetical protein [Clostridium botulinum A str. ATCC
           3502]
 gi|152927690|gb|ABS33190.1| ATP-grasp domain protein [Clostridium botulinum A str. ATCC 19397]
 gi|152931154|gb|ABS36653.1| ATP-grasp domain protein [Clostridium botulinum A str. Hall]
 gi|226841040|gb|ACO83706.1| ATP domain protein [Clostridium botulinum A2 str. Kyoto]
          Length = 342

 Score = 66.3 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 38/244 (15%), Positives = 84/244 (34%), Gaps = 32/244 (13%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT---MDSQHLISPPY 128
            + L      S     ++  DK  + +      +    S           D+   ++ P+
Sbjct: 87  FKELGTTLLLSHKNLISICNDKWNTYKFFIENNINTPISYTKENIENILKDNPEKLNFPF 146

Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD 188
           ++KPL G  S G+        +          ++  + +I+++V+G E T  V+ D   +
Sbjct: 147 ILKPLDGMGSAGVFKANNKTQL------DFFKDYIKEPIIQEFVEGTEYTIDVLCDLKGE 200

Query: 189 VTEIAVPK--SDFYSYELKYSSLNSTHVLPAKIPL--------DIYKEVQRLAFLAHQAI 238
           +  I   +          K  ++N   ++ A + L        + YK   ++A      +
Sbjct: 201 IISIVPRERIEVRSGEVSKSKTVNHKEIIKATLNLVNKLKQHIEEYKVYCKVASKNFNTL 260

Query: 239 GCR-------GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
                     G      +     +++ ++EIN + G       P      G  + +   +
Sbjct: 261 SLEKDEASVIGPLTIQCIVTK-EKEIKFIEINPRFG----GGVPLSFEA-GVDYGKYFKY 314

Query: 292 MVED 295
           MVE+
Sbjct: 315 MVEE 318


>gi|307718547|ref|YP_003874079.1| pyruvate carboxylase subunit A [Spirochaeta thermophila DSM 6192]
 gi|306532272|gb|ADN01806.1| pyruvate carboxylase subunit A [Spirochaeta thermophila DSM 6192]
          Length = 442

 Score = 66.3 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 70/197 (35%), Gaps = 15/197 (7%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI----SPPYVIK 131
            + +         L  DK+++K+     GVPV P        +     +      P ++K
Sbjct: 99  GLVFIGPSPEVIHLLGDKVQAKETARKYGVPVIPGSDGAVEDVAQARALVREMGFPVIVK 158

Query: 132 PLKGGSSLGIIVIKKDQSIPL----DLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDAS 186
              GG   G+ ++ K++ +         ++        L IE+++ +   +   ++GDA 
Sbjct: 159 AAAGGGGKGMRIVWKEEDLERTLRIASQEAEKAFSDGTLYIEKFLQNPRHVEVQLLGDAH 218

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRS 246
            +V  +            K             +  ++ + +   A    + IG  G    
Sbjct: 219 GNVVHLGERDCSV----QKNHQKLVEESPSPVVTPEMREAMGEAAVRLFKGIGYVGAGTV 274

Query: 247 DFLFDPLSRKVFWLEIN 263
           +FL      + +++E+N
Sbjct: 275 EFLV--ADGRFYFMEVN 289


>gi|290973468|ref|XP_002669470.1| pyruvate carboxylase [Naegleria gruberi]
 gi|284083018|gb|EFC36726.1| pyruvate carboxylase [Naegleria gruberi]
          Length = 1200

 Score = 66.3 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 43/252 (17%), Positives = 90/252 (35%), Gaps = 26/252 (10%)

Query: 34  SQIDVDRSVGLVLAHLKPDLAF--------NVLHGNFG---EDGLVQAILELLEIPYTHS 82
             I  D+ +G V A+L  D           + +H  +G   E            I +   
Sbjct: 113 YLIGKDKELGPVEAYLSIDEIIKIAKENGVDAIHPGYGFLSERADFARACSENGIQFIGP 172

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSS 138
                    DK R+++V +  G+PV P     +            IS P ++K   GG  
Sbjct: 173 TADVVESFGDKTRARKVATDIGIPVVPGTPTAVTSIAEAKTFCSQISFPVILKAAMGGGG 232

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHG----DQLLIEQYVD-GIELTCGVMGDASLDVTEIA 193
            G+ V+ K + +     ++SS          + IE++V+    +   ++ D   +V  + 
Sbjct: 233 RGMRVVSKMEDLEEAFQRASSEALNAFGSSAIFIEKFVEKPRHIEVQILADKFGNVVHLY 292

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
                     ++        + PA  +   + +++   A    + +  +     +FL D 
Sbjct: 293 E-----RDCSVQRRHQKVVEIAPAPHLNPQVREKILADAVRLARHVKYQNAGTFEFLVDS 347

Query: 253 LSRKVFWLEINV 264
             +  +++E+N 
Sbjct: 348 NGKDYYFIEVNP 359


>gi|149276284|ref|ZP_01882428.1| phosphoribosylaminoimidazole carboxylase, ATPase subunit
           [Pedobacter sp. BAL39]
 gi|149232804|gb|EDM38179.1| phosphoribosylaminoimidazole carboxylase, ATPase subunit
           [Pedobacter sp. BAL39]
          Length = 379

 Score = 66.3 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 34/189 (17%), Positives = 64/189 (33%), Gaps = 15/189 (7%)

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGG-SS 138
                    L  DK   KQ      +P  P  LVN          + PY++K  + G   
Sbjct: 94  VFPQARVIRLIQDKGVQKQFFKENNIPTAPFQLVNTREDIKNSHFAFPYILKQRRDGYDG 153

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKS 197
            G++ I     I                LIE+ VD   E+   V  +++ DV    + + 
Sbjct: 154 KGVMRINGAADIEQA--------FDAPCLIEELVDFEKEIAVIVSRNSNGDVKTFPMVEM 205

Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
           +F +       L    + P+  P  + +  + +A     ++   G+   +        ++
Sbjct: 206 EFNAEAN----LVEFLISPSTYPESLQERAENIAKNIASSLNITGLLAVEMFVTK-DGEI 260

Query: 258 FWLEINVQP 266
              E+  +P
Sbjct: 261 LVNELAPRP 269


>gi|91689202|gb|ABE32402.1| Acetyl-CoA carboxylase, biotin carboxylase [Burkholderia xenovorans
           LB400]
          Length = 461

 Score = 66.3 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 34/222 (15%), Positives = 78/222 (35%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         +  DK+ +KQ +   GVP  P    
Sbjct: 83  AIHPGYGFLSENADFAERVEQSGFTFIGPRPETIRMMGDKVTAKQTMIKTGVPCVPGSEG 142

Query: 112 ---LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
                 +  +     +  P +IK   GG   G+ V+  + ++   +     ++       
Sbjct: 143 ALPEDPKEIVKIARQVGYPVIIKAAGGGGGRGMRVVHTEAALVNAVNMTREEAGRAFGNP 202

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
           Q+ +E++++    +   V+ D+  +   +            K          PA  I   
Sbjct: 203 QVYMEKFLENPRHIEIQVLADSFKNAVWLGERDCSMQRRHQK-----VIEEAPAPGIARR 257

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +   +      A + +G  G    +FL+   + + +++E+N 
Sbjct: 258 LIDRIGDRCADACKKMGYLGAGTFEFLY--ENGEFYFIEMNT 297


>gi|328953823|ref|YP_004371157.1| carbamoyl-phosphate synthase, large subunit [Desulfobacca
           acetoxidans DSM 11109]
 gi|328454147|gb|AEB09976.1| carbamoyl-phosphate synthase, large subunit [Desulfobacca
           acetoxidans DSM 11109]
          Length = 1066

 Score = 66.3 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 40/265 (15%), Positives = 89/265 (33%), Gaps = 33/265 (12%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ------ 69
           AL D GF+   +         D D S  L    L  +   ++ H    E  +VQ      
Sbjct: 580 ALRDEGFESIMVNCNPETVSTDYDTSDKLYFEPLTVEDVLSIYHKEKPEGMIVQFGGQTP 639

Query: 70  ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHL 123
                 L    +    +      L+ D+ R +Q ++  G+P   S +       +++   
Sbjct: 640 LNIAGELAAAGVTILGTSPDVIDLAEDRDRFRQTMARLGIPQPESDMAASLEEALEAARR 699

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY----VDGIELTC 179
           I  P +++P        + V+  ++ +   +  +   +    +LI+++    ++      
Sbjct: 700 IGYPLMVRPSYVLGGRAMEVVHDEEMLRHYVAAAVGVSRKRPILIDRFLENAIEAEADAV 759

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
               DA +      +  +  +S        ++  + P  IP    + +         A+ 
Sbjct: 760 ADGTDAFVPAVMEHIELAGIHS------GDSACVIPPISIPPKHLETICEYTRRI--AME 811

Query: 240 CRGISRSDFLFDPLSRKVFWLEINV 264
            + I   +  +      V+ LE N 
Sbjct: 812 LKVIGLMNIQYAIAHDTVYVLEANP 836



 Score = 62.1 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 46/278 (16%), Positives = 97/278 (34%), Gaps = 36/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL   G+++  +         D               S+  ++   +PD    
Sbjct: 29  SGTQACKALRQLGYEIVLVNSNPATIMTDPGMADFTYIEPLNLASMTEIIKKEQPDALLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G  G +   +     +LE   +      + A     D++  K+ ++  G+ +  S +
Sbjct: 89  NLGGQSGLNLSSELARSGVLEKYGVRIIGVEVDAIQRGEDRLAFKETMNRLGIDMPESAI 148

Query: 113 VNRFTMDS--QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                        +  P V++P       G  ++   + +     +  S +   Q+L+E+
Sbjct: 149 ATSPEEAERIADKLGYPVVVRPAYTMGGWGGGLVYNLEELRTIASRGISASLVGQILVEE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK---IPLDIYKE 226
            V G  EL   V+ DA   +  +   ++                   A    I  ++ + 
Sbjct: 209 SVLGWEELELEVVRDAKNQMITVCFIENV-----DAMGVHTGDSFCTAPMLTIAPELQQL 263

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +Q+ ++   +AI   G +   F  +P + +V  +EIN 
Sbjct: 264 LQKYSYDIVEAIQVIGGTNIQFAHNPRTGRVVVIEINP 301


>gi|303250145|ref|ZP_07336347.1| phosphoribosylglycinamide formyltransferase 2 [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|307255003|ref|ZP_07536821.1| Phosphoribosylglycinamide formyltransferase 2 [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|307259439|ref|ZP_07541164.1| Phosphoribosylglycinamide formyltransferase 2 [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|302651208|gb|EFL81362.1| phosphoribosylglycinamide formyltransferase 2 [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306861876|gb|EFM93852.1| Phosphoribosylglycinamide formyltransferase 2 [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|306866375|gb|EFM98238.1| Phosphoribosylglycinamide formyltransferase 2 [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
          Length = 393

 Score = 66.3 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 55/310 (17%), Positives = 102/310 (32%), Gaps = 58/310 (18%)

Query: 19  GKACASALEDAGFKVSQID--------------------VDRSVGLVLAHLKPDLAFNVL 58
           GK     L+  G +V  +D                       ++  ++   KPD     +
Sbjct: 24  GKEVVIELQRLGVEVIAVDRYENAPAQQVAHRAYTISMLDGAALRALVEKEKPDFIVPEV 83

Query: 59  HGNFGEDGLVQAILELLEIPY-THSGILASALSMDKM-RSKQVVSSCGVPVCPSILVNRF 116
                E      ++EL +  Y       A+ L+M++    +      G+   P   V+  
Sbjct: 84  -----EAIATATLVELEQEGYNVVPTAKATQLTMNREGIRRLAAEELGLKTSPYRFVDNL 138

Query: 117 TMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLD--LLQSSSWNHGDQLLIEQYV 172
               Q +  I  P V+KP+   S  G  VIK +  I       Q      G ++++E ++
Sbjct: 139 EDFKQAVAEIGIPCVVKPIMSSSGHGQSVIKSEDQIQQAWDYSQEGGRAGGGRVIVEGFI 198

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYEL----KYSSLNSTHVL-PAKIPLDIYKEV 227
                          ++T++ V   +  S+      +    +      P  +     K  
Sbjct: 199 K-----------FDYEITQLTVRHVNGTSFLAPIGHRQEDGDYRESWQPQAMSDLALKRA 247

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP---GMT-----PVSIFPEMAA 279
           Q  A     A+G RGI   +        ++ + E++ +P   GM       +S F   A 
Sbjct: 248 QETAERITTALGGRGIFGVELFV--CGDEIIFNEVSPRPHDTGMVTMASQELSQFALHAR 305

Query: 280 YA-GYSFREL 288
              G    E+
Sbjct: 306 AILGLPISEI 315


>gi|284051570|ref|ZP_06381780.1| cyanophycin synthetase [Arthrospira platensis str. Paraca]
          Length = 871

 Score = 66.3 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 54/121 (44%), Gaps = 4/121 (3%)

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF---TMDSQHLISPPYVIKPLKGG 136
           + +GIL   L+ DK  +KQV+   G+PV    ++  F   T   + +   P  IKPL G 
Sbjct: 183 SSTGILGVELACDKEGTKQVLRDGGIPVPRGTVIRYFEDLTDAIEDVGGYPIAIKPLDGN 242

Query: 137 SSLGIIV-IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195
              GI + + + ++       +S  +    ++IE++  G +    V+    + V+E    
Sbjct: 243 HGRGITLDVTRWETAQAAYDAASEASKTRSVIIERFYKGRDHRVLVVNGRVVAVSERVPA 302

Query: 196 K 196
            
Sbjct: 303 H 303


>gi|288549413|ref|ZP_05967019.2| hypothetical protein ENTCAN_05384 [Enterobacter cancerogenus ATCC
           35316]
 gi|288319005|gb|EFC57943.1| ribosomal protein S6 modification protein [Enterobacter
           cancerogenus ATCC 35316]
          Length = 315

 Score = 66.3 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 59/289 (20%), Positives = 120/289 (41%), Gaps = 45/289 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-------VDRSVGLVLAHLK--- 50
           +A+L       R+ +L S +    A    G ++  +D       +D +   +    +   
Sbjct: 18  IAILS------RDGTLYSCRRLREAAAKRGHQIEILDPMSCYMNIDPAASSIHYKGRRLP 71

Query: 51  -PDLAFNVLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV 105
             D     + G+    +G   L Q   E+L   Y  +  +A + + DK+RS Q+++  G+
Sbjct: 72  HFDAVIPRI-GSQITYYGTAALRQ--FEMLG-SYPLNESVAISRARDKLRSLQLLARQGI 127

Query: 106 --PVCPSILVNRFTMDSQHLISP-PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
             PV         T D   ++   P VIK ++G   +G+++ +  Q+     +  +    
Sbjct: 128 DLPVTGIAHSPDDTSDLIDMVGGAPLVIKLVEGTQGIGVVLAETRQAAES--VIDAFRGL 185

Query: 163 GDQLLIEQYVD---GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI 219
              +L+++Y++   G ++ C V+GD  +   E    + DF S   +           A+I
Sbjct: 186 NAHILVQEYIEEAKGRDIRCFVVGDEVVAAIERQAKEGDFRSNLHRGGV--------ARI 237

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268
             +I +  + +A  A Q +G   ++  D      +R    +E+N  PG+
Sbjct: 238 -AEISERERVIAVKAAQTLGL-DVAGVD--LLRATRGPLVMEVNASPGL 282


>gi|115397665|ref|XP_001214424.1| hypothetical protein ATEG_05246 [Aspergillus terreus NIH2624]
 gi|114192615|gb|EAU34315.1| hypothetical protein ATEG_05246 [Aspergillus terreus NIH2624]
          Length = 1126

 Score = 66.3 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 32/268 (11%), Positives = 79/268 (29%), Gaps = 33/268 (12%)

Query: 47  AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP 106
              K D      +G   E+      +    + +      +      K  ++ + +  GVP
Sbjct: 30  KQHKADAVIPG-YGFLSENADFARAVADAGLVFVGPAPESIEAFGLKHTARDLAAKAGVP 88

Query: 107 VCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-----S 157
           + P     +      +     +  P ++K   GG  +G++    ++ +            
Sbjct: 89  IVPGSAGLVTSGDEAVSVARDLGFPVMLKATAGGGGMGLLTCNSEEDVRESFSTVQSRGD 148

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
           + + +    +   Y     +   V G+ +     I   +        K          P+
Sbjct: 149 ALFKNAGVFIERYYPSSHHIEVQVFGNGNGKAISIGERECSIQRRHQK-----VIEECPS 203

Query: 218 KI---PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274
                   +   +   A    ++I        ++L D  +   F+LE+N           
Sbjct: 204 PFVTKNPGLRASLGSAAVRLAESINYGSAGTIEYLVDDETGSFFFLEMNT---------- 253

Query: 275 PEMAAYAGYS---FR-ELLLWMVEDASC 298
             +    G +   +  +L+  M++ A  
Sbjct: 254 -RLQVEHGITELCYGIDLVELMLKQADA 280


>gi|86156685|ref|YP_463470.1| carbamoyl-phosphate synthase L chain, ATP-binding protein
           [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85773196|gb|ABC80033.1| biotin carboxylase [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 510

 Score = 66.3 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 77/220 (35%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+  +   L+   I        A      K  +++ +++ GVPV P    
Sbjct: 82  AVHPGYGFLSENAELARALDRAGIALIGPPAAAMDAMGVKTTARRNMAAAGVPVVPGSEE 141

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL----DLLQSSSWNHGDQ 165
                         I  P +IK   GG   G+    + +           ++++    D+
Sbjct: 142 PFAEEAEARAFAERIGFPVMIKAAAGGGGKGMKKCDRAEDFAALWQSARREATAAFGDDR 201

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           L +E++++    +   V  D   +   +   +      + K             +   + 
Sbjct: 202 LYLEKFLEKPRHVEIQVFADQHGNCVWLGERECSVQRRQQK----VIEETPSVVLDDRLR 257

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +  +A  A +A+G  G    + L D   R  ++LE+N 
Sbjct: 258 EAMGEVAVRAARAVGYVGAGTVELLVDAH-RNFYFLEMNT 296


>gi|238789812|ref|ZP_04633594.1| Biotin carboxylase [Yersinia frederiksenii ATCC 33641]
 gi|238722171|gb|EEQ13829.1| Biotin carboxylase [Yersinia frederiksenii ATCC 33641]
          Length = 449

 Score = 66.3 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 39/222 (17%), Positives = 82/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         L  DK+ +   +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAEQVERSGFIFIGPRAETIRLMGDKVSAISAMKKAGVPCVPGSDG 136

Query: 112 LVNRFT---MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
            ++  T         I  P +IK   GG   G+ V++ D+ +   +     ++ +  + D
Sbjct: 137 PLSDDTTKNKAFAKRIGYPVIIKASGGGGGRGMRVVRHDKDLEQSINMTRAEAKAAFNND 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+Y++    +   ++ D   +   +A           K          PA  I  +
Sbjct: 197 MVYMEKYLENPRHIEIQILADGQGNAIYLAERDCSMQRRHQK-----VVEEAPAPGITSE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + + +      A   IG RG    +FL+   + + +++E+N 
Sbjct: 252 MRRYIGDRCAKACVEIGYRGAGTFEFLY--ENGEFYFIEMNT 291


>gi|333030844|ref|ZP_08458905.1| Pyruvate carboxylase [Bacteroides coprosuis DSM 18011]
 gi|332741441|gb|EGJ71923.1| Pyruvate carboxylase [Bacteroides coprosuis DSM 18011]
          Length = 499

 Score = 66.3 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 28/198 (14%), Positives = 70/198 (35%), Gaps = 14/198 (7%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIK 131
            + +            DK+ +K++ +   VP+       I      +     +  P +IK
Sbjct: 105 GVIFIGPTPKVIKDMGDKVVAKEIAAKGNVPMLTGSEGAIHTLEEVVTVAKKVGYPLIIK 164

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQLLIEQYVD-GIELTCGVMGDAS 186
              GG   G+ ++ +   +    + +SS          + IE+Y++    +   ++ D  
Sbjct: 165 ACTGGGGRGMRIVHRQSELKQMYIAASSEAAIAFNNSAVFIEKYLENPRHIEVQIVADTH 224

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRS 246
            +V  +   +        K      + +    +  ++ K++   A    +  G   +   
Sbjct: 225 GNVVHLGERECSIQRKHQKLLEEAPSSI----LDDNLRKKITDAAISLAKEAGYSSLGTV 280

Query: 247 DFLFDPLSRKVFWLEINV 264
           +FL D      +++E+N 
Sbjct: 281 EFLLDKKMN-FYFMEMNT 297


>gi|330981079|gb|EGH79182.1| carbamoyl phosphate synthase large subunit [Pseudomonas syringae
           pv. aptata str. DSM 50252]
          Length = 490

 Score = 66.3 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 28/196 (14%), Positives = 74/196 (37%), Gaps = 8/196 (4%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYV 129
           LE   +P   +   A   + D+ R + +V    +   P+  V        +   I  P V
Sbjct: 70  LEAAGVPIIGTSPDAIDRAEDRERFQHMVERLNLRQPPNATVRSEDEAIRAAAKIGYPLV 129

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLD 188
           ++P        + ++ ++  +   L ++   ++   +L++ +++  IE+    + D +  
Sbjct: 130 VRPSYVLGGRAMEIVYQEDELKRYLREAVQVSNDSPVLLDHFLNCAIEMDVDAVCDGTDV 189

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           V    +   +       +S  ++  + P  +P  I  E++         +G  G+   + 
Sbjct: 190 VIGAIMQHIEQAGV---HSGDSACSLPPYSLPAHIQDEMREQVKKMALELGVVGL--MNV 244

Query: 249 LFDPLSRKVFWLEINV 264
                   ++ +E+N 
Sbjct: 245 QLALQGEDIYVIEVNP 260


>gi|307565360|ref|ZP_07627853.1| carbamoyl-phosphate synthase, large subunit [Prevotella amnii CRIS
           21A-A]
 gi|307346029|gb|EFN91373.1| carbamoyl-phosphate synthase, large subunit [Prevotella amnii CRIS
           21A-A]
          Length = 1074

 Score = 66.3 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 22/197 (11%), Positives = 73/197 (37%), Gaps = 10/197 (5%)

Query: 71  ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ--HLISPPY 128
            L+   +P   +       + D+ +   ++++ G+       +N      +    +  P 
Sbjct: 654 YLDEENVPILGTSAHDIDNAEDRAKFSSMLTNYGINQPEWSALNSMDDIQKFVDRVGFPV 713

Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC--GVMGDAS 186
           +++P    S   + +   +  +   L  +++ +    +++ ++++  +      V  D  
Sbjct: 714 LVRPSYVLSGAAMNICSNNDELVRFLQLAANVSEDHPVVVSKFIENAKEIEMDAVAKDGE 773

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRS 246
           +    I    S+   +   +S   +    P K+ ++  + ++R++    +A+   G    
Sbjct: 774 ILAYAI----SEHIEFAGVHSGDATIQFPPQKLYVETVRRIKRVSKQIAKALHINGPFNI 829

Query: 247 DFLFDPLSRKVFWLEIN 263
            F+       +  +E N
Sbjct: 830 QFM--ARDNDILVIECN 844



 Score = 47.8 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 48/275 (17%), Positives = 95/275 (34%), Gaps = 34/275 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL + G     I+ + +                     V  V+   KPD    
Sbjct: 28  SGSQALKALREEGISTVLINPNIATVQTSEGVADQIYYLPVQPYFVERVIEKEKPDGILL 87

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
              G    +  V+     IL+   +    + + A   + D+    + +    V    S  
Sbjct: 88  SFGGQTALNCGVELERSGILKKHNVRVLGTPVGAIMNTEDRELFVERLYEIEVKTIKSEA 147

Query: 113 VNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                    +  ++  P +++       LG      +Q +    L   +++   Q+L+E+
Sbjct: 148 CENINQARHAATILGYPVIVRAAYALGGLGSGFADNEQELNK--LCEKAFSFSPQVLVEK 205

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQ 228
            + G  E+   V+ D   +   I V   + +   L   +  S  V P++ +    Y +++
Sbjct: 206 SLKGWKEIEYEVVRDRYDN--CITVCNMENFD-PLGIHTGESIVVAPSQTLTNTEYHKLR 262

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            L+    + IG  G     + FDP S     +E+N
Sbjct: 263 ALSIKIVRHIGIVGECNVQYAFDPESEDYRVIEVN 297


>gi|153869818|ref|ZP_01999341.1| Phosphoribosylaminoimidazole carboxylase, ATPase subunit [Beggiatoa
           sp. PS]
 gi|152073719|gb|EDN70662.1| Phosphoribosylaminoimidazole carboxylase, ATPase subunit [Beggiatoa
           sp. PS]
          Length = 392

 Score = 66.3 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 39/194 (20%), Positives = 69/194 (35%), Gaps = 25/194 (12%)

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGG-SS 138
                    +  DK   KQ+++   VPV     +   T D       P V K  KGG   
Sbjct: 97  ICPSPKVLVIIQDKYLQKQILAKNHVPVPDFKAIEELTPDMLAEAKFPIVQKARKGGYDG 156

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD 198
            G++V+K  + I   L   S        ++E+++D             L V     P  +
Sbjct: 157 RGVVVLKSPEDIKNALQTPS--------MLEEFID---------FTKELAVIIARTPTGE 199

Query: 199 FYSYEL------KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
              Y +      + +++    V PA+I      + + +A  A +A+   GI   +     
Sbjct: 200 TMCYPVVEMVFDEQANICDIVVAPARINKATALKAREVALHAVEAVEGVGIFGVEMFLT- 258

Query: 253 LSRKVFWLEINVQP 266
              ++   EI  +P
Sbjct: 259 HDGQILVNEIAPRP 272


>gi|317496520|ref|ZP_07954869.1| carbamoyl-phosphate synthase [Gemella moribillum M424]
 gi|316913323|gb|EFV34820.1| carbamoyl-phosphate synthase [Gemella moribillum M424]
          Length = 1058

 Score = 66.3 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 46/274 (16%), Positives = 105/274 (38%), Gaps = 33/274 (12%)

Query: 20  KACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNVL 58
           +AC S L + G++V  ++        D+ +                ++   +PD     L
Sbjct: 32  QACLS-LREEGYEVILVNSNPATIMTDKEIADKVYMEPLTLEFVSKIIRKERPDALLPTL 90

Query: 59  HGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
            G  G +  V+     +L+   +    + + +   + D+   + +++    PV  S ++ 
Sbjct: 91  GGQVGLNLAVELHKSGVLDRYGVELLGTKLSSIEQAEDRELFRNLMNELNEPVPESAIIT 150

Query: 115 --RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                 D    I  P +++P       G  +   ++ +   +     ++   Q L+E+ +
Sbjct: 151 TVEEAYDFVAEIGYPVIVRPAFTMGGTGGGICYNEKDLEEIVSSGLHYSPVTQCLLEKSI 210

Query: 173 DG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRL 230
            G  E+   VM D++   T I V   +     +   + +S  V P++ +    Y  ++ +
Sbjct: 211 AGFKEIEYEVMRDSND--TAIVVCNMENID-PVGIHTGDSVVVAPSQTLTDREYHMLRDV 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +    +A+   G        DP S K + +E+N 
Sbjct: 268 SLKIIRALKIEGGCNVQLALDPESFKYYIIEVNP 301



 Score = 65.9 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 26/223 (11%), Positives = 78/223 (34%), Gaps = 14/223 (6%)

Query: 68  VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQHLIS 125
           + A LE   +    + +     + D+ + ++++    +P             + +   I 
Sbjct: 642 LAAKLEKHGVKILGTALEEIDNAEDRDKFEELLRKLEIPQPLGKTAFDVETAVKNAEEIG 701

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            P +++P        + ++ ++  +   +  +   +    +L ++Y+ G E+    + D 
Sbjct: 702 YPVLVRPSYVLGGRAMEIVYEESELRRYMKTAVKLSPEHPVLTDRYLVGREIEVDAISDG 761

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGIS 244
              +    +   +           +S  V P + +  +   ++        + +   G+ 
Sbjct: 762 ETVIIPGIMEHIERAGVHS----GDSIAVYPPQTLTQNEKDKLIEYTIKLAKGLNIVGLL 817

Query: 245 RSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEMAAYAG 282
              ++      +VF LE+N       P ++ ++  P     AG
Sbjct: 818 NIQYVISK--GEVFVLEVNPRSSRTVPFLSKITGVPMAKLAAG 858


>gi|254516628|ref|ZP_05128687.1| carbamoyl-phosphate synthase, large subunit [gamma proteobacterium
           NOR5-3]
 gi|219675051|gb|EED31418.1| carbamoyl-phosphate synthase, large subunit [gamma proteobacterium
           NOR5-3]
          Length = 1072

 Score = 66.3 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 29/196 (14%), Positives = 80/196 (40%), Gaps = 8/196 (4%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           LE   +P   +   A   + D+ R +Q++   G+    +  V      +++   I  P V
Sbjct: 653 LEAAGVPIIGTTPDAIDRAEDRERFQQLIQELGLLQPANTTVRSVEQAIEAARTIGYPLV 712

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLD 188
           ++P        + ++ +++ +   + ++ S +    +L++ ++   IE+    + D    
Sbjct: 713 VRPSYVLGGRAMEIVYREEDLLRYMREAVSVSDESPVLLDSFLSAAIEVDIDAVSDGEQV 772

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           V    +   +       +S  ++  + P  +P D+  +++        A+G +G+   + 
Sbjct: 773 VIGAIMQHIEQAGV---HSGDSACSLPPYSLPADVQDQMREQVRQMALALGVKGL--MNV 827

Query: 249 LFDPLSRKVFWLEINV 264
                  K++ +E+N 
Sbjct: 828 QLAWQDEKIYVIEVNP 843



 Score = 62.4 bits (151), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 44/278 (15%), Positives = 95/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D              R+V  ++   KPD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPSMADATYIEPIEWRTVARIIEVEKPDALLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +    + +LE   +    +   A   + D+    + +   G+    +  
Sbjct: 89  TMGGQTALNCALDLAREGVLEANGVEMIGATKEAIDKAEDRELFDKAMKRIGLETPRASF 148

Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                        +  P +I+P       G  +    +      L+    +   +LLI++
Sbjct: 149 ARSMEEAHAVREKLGFPCIIRPSFTMGGSGGGIAYNREEFEEICLRGLDLSPTSELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + +   I   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDRNDNCIIICAIEN----FDAMGVHTGDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F   P + ++  +E+N 
Sbjct: 265 RNASLAVLREIGVETGGSNVQFGVCPKTGRMVVIEMNP 302


>gi|172058001|ref|YP_001814461.1| pyruvate carboxylase [Exiguobacterium sibiricum 255-15]
 gi|171990522|gb|ACB61444.1| pyruvate carboxylase [Exiguobacterium sibiricum 255-15]
          Length = 1144

 Score = 66.3 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 32/221 (14%), Positives = 76/221 (34%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+  +        I +            DK+R++      G+PV P    
Sbjct: 80  AIHPGYGFLSENIELATRCREEGIIFIGPREEHLYSFGDKVRARTTAIEAGLPVIPGTDG 139

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL----DLLQSSSWNHGDQ 165
            I               P ++K   GG   G+ V++ ++ +P        ++      D+
Sbjct: 140 PITSIDEAYAFAEKAGYPLMVKASLGGGGRGMRVVRTEEELPEMIERAKSEALKAFGSDE 199

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           + +E+ ++    +   ++GDA  ++              ++        V P   +  + 
Sbjct: 200 IYVEKLIERPKHIEVQIIGDAHGNIV-----HLFERDCSVQRRHQKVVEVAPCVTLSDEG 254

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +++   A    + +G       +FL        +++E+N 
Sbjct: 255 RQKICEAAVTLMKHVGYENAGTVEFLVT-QDESFYFIEVNP 294


>gi|170695454|ref|ZP_02886599.1| carbamoyl-phosphate synthase, large subunit [Burkholderia graminis
           C4D1M]
 gi|170139645|gb|EDT07828.1| carbamoyl-phosphate synthase, large subunit [Burkholderia graminis
           C4D1M]
          Length = 1084

 Score = 66.3 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 26/203 (12%), Positives = 73/203 (35%), Gaps = 13/203 (6%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQHLISPPYV 129
           LE   +P   +       + D+ R ++++   G+   P+         +     I  P V
Sbjct: 655 LEANGVPIIGTSPDMIDAAEDRERFQKLLQDLGLRQPPNRTARAEDEALKLADEIGYPLV 714

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++ + + +   + ++   ++   +L+++++ D IE     + D    
Sbjct: 715 VRPSYVLGGRAMEIVHEPRDLERYMREAVKVSNDSPVLLDRFLNDAIECDVDCISDGEAV 774

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                +   +       +S  ++  + P  +  +   E++R      +A+   G+    F
Sbjct: 775 FIGGVMEHIEQAGV---HSGDSACSLPPYSLSKETVAELKRQTGAMAKALNVIGLMNVQF 831

Query: 249 LFD-------PLSRKVFWLEINV 264
                          ++ LE+N 
Sbjct: 832 AIQQVPQADGSKEDVIYVLEVNP 854



 Score = 60.9 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 48/285 (16%), Positives = 93/285 (32%), Gaps = 42/285 (14%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +              DV          V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYKVILVNSNPATIMTDPNTADVTYIEPITWEVVERIIAKERPDAILP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G    +  +      +L    +    +   A   + D+ + K  ++  G+    S  
Sbjct: 89  TMGGQTALNCALDLHAHGVLTKYNVELIGASPEAIDKAEDRQKFKDAMTKIGLGSAKSGT 148

Query: 111 -------ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
                  + V             P VI+P       G  +    +       +    +  
Sbjct: 149 AHSMEEALSVQADIAAQTGSGGYPVVIRPSFTLGGSGGGIAYNREEFEEICKRGLDLSPT 208

Query: 164 DQLLIEQYVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IP 220
            +LLIE+ + G  E    V+ D   + +   ++   D           +S  V PA+ + 
Sbjct: 209 RELLIEESLLGWKEYEMEVVRDKKDNCIIVCSIENLDPMGIHT----GDSITVAPAQTLT 264

Query: 221 LDIYKEVQRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
              Y+ ++  +    + IG   G S   F  +P   ++  +E+N 
Sbjct: 265 DKEYQVLRNASLAVLREIGVDTGGSNVQFSINPKDGRMIVIEMNP 309


>gi|58580833|ref|YP_199849.1| ribosomal protein S6 modification protein [Xanthomonas oryzae pv.
           oryzae KACC10331]
 gi|58425427|gb|AAW74464.1| ribosomal protein S6 modification protein [Xanthomonas oryzae pv.
           oryzae KACC10331]
          Length = 353

 Score = 66.3 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 54/272 (19%), Positives = 109/272 (40%), Gaps = 35/272 (12%)

Query: 16  LSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL-----------KPDLAFNVLHGNFGE 64
           L S +    A    G  V  +D  R    + A               D     +  +   
Sbjct: 70  LYSTRRLIEAGRKRGHTVRILDPLRCYMRIAADGFSLHYKGKPITGFDAVIPRIGASVTR 129

Query: 65  DGL-VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            G  V   LE +   YT +   A   + DK+R+ Q++++ G+ +  ++  +    D+Q L
Sbjct: 130 YGTAVLRQLEFMG-TYTPNPSDAILRARDKLRAHQLLAAQGIDMPVTVFGDNPD-DTQDL 187

Query: 124 IS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV---DGIE 176
           +S    PP+V+K L  G+    +++ +  S    ++++    + +  ++++++   +G +
Sbjct: 188 LSMLGPPPHVVK-LNEGAQGAGVILTEKASASRSVVEALRGLYAN-FIVQEFIGEAEGAD 245

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           L C V+GD  +        + DF S       L  T V+      D  +  + +A  + +
Sbjct: 246 LRCFVVGDRVVAAMRRQAAEGDFRS----NLHLGGTAVV-----ADATELEREVAVRSAR 296

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268
           A+G       D +          LE+N  PG+
Sbjct: 297 ALGLAVAG-VDLIRSKRG--PLVLEVNSTPGL 325


>gi|315187083|gb|EFU20840.1| biotin carboxylase ;acetyl-CoA carboxylase carboxyltransferase
           subunit alpha [Spirochaeta thermophila DSM 6578]
          Length = 442

 Score = 66.3 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 32/197 (16%), Positives = 70/197 (35%), Gaps = 15/197 (7%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI----SPPYVIK 131
            + +         L  DK+++K+     GVPV P        +     +      P ++K
Sbjct: 99  GLVFIGPSPEVIHLLGDKVQAKETARKYGVPVIPGSDGAVEDVAQARALVREMGFPVIVK 158

Query: 132 PLKGGSSLGIIVIKKDQSIPL----DLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDAS 186
              GG   G+ ++ K++ +         ++        L IE+++ +   +   ++GDA 
Sbjct: 159 AAAGGGGKGMRIVWKEEDLERTLRIASQEAEKAFSDGTLYIEKFLQNPRHVEVQLLGDAH 218

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRS 246
            +V  +            K             +  ++ K +   A    + IG  G    
Sbjct: 219 GNVVHLGERDCSV----QKNHQKLVEESPSPVVTPEMRKAMGEAAVRLFKGIGYVGAGTV 274

Query: 247 DFLFDPLSRKVFWLEIN 263
           +FL      + +++E+N
Sbjct: 275 EFLV--ADGRFYFMEVN 289


>gi|308188305|ref|YP_003932436.1| Biotin carboxylase [Pantoea vagans C9-1]
 gi|308058815|gb|ADO10987.1| Biotin carboxylase [Pantoea vagans C9-1]
          Length = 449

 Score = 66.3 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 78/221 (35%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---S 110
            +H  +G   E+      +E     +         L  DK+ +   +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAEQVERSGFIFIGPKADTIRLMGDKVSAINAMKKAGVPTVPGSDG 136

Query: 111 ILVNRFTMD--SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
            L +    +      I  P +IK   GG   G+ V++ D+ +   +     ++ +  + D
Sbjct: 137 SLTDDMEKNRAFAKRIGYPVIIKASGGGGGRGMRVVRGDKDLEESINMTKAEAKAAFNND 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            + +E+Y++    +   V+ D   +   +            K             I  + 
Sbjct: 197 MVYMEKYLENPRHIEIQVLADGQGNAIYLGERDCSMQRRHQK----VVEEAPGPGITEEQ 252

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +      A   IG RG    +FL+   + + +++E+N 
Sbjct: 253 RRFIGNRCSQACIEIGYRGAGTFEFLY--ENGEFYFIEMNT 291


>gi|297158281|gb|ADI07993.1| putative acetyl/propionyl CoA carboxylase alpha subunit
           [Streptomyces bingchenggensis BCW-1]
          Length = 644

 Score = 66.3 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 40/209 (19%), Positives = 82/209 (39%), Gaps = 11/209 (5%)

Query: 59  HGNFGED-GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117
           +G   E+ G  +A+++   + +      A      K R+K ++ + GVP+   +  +R T
Sbjct: 82  YGFLSENAGFARAVID-AGLRWIGPPPEAIEAMASKTRAKDLMGAAGVPLLAPVDPDRAT 140

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IE 176
            D   L+           G  +   +      +     ++ S     ++ +E YV+G   
Sbjct: 141 PDDLPLLVKAAAG-GGGRGMRVVRDLAALPAELTSARAEALSAFGDAEVFLEPYVEGARH 199

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAH 235
           +   ++ DA  +V  +           L+          PA ++P ++   +   A  A 
Sbjct: 200 VEVQILADAHGEVWALGT-----RDCSLQRRHQKVIEEAPAPQLPDELRHALDEAAVGAA 254

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +AIG RG    +FL      + ++LE+N 
Sbjct: 255 RAIGYRGAGTVEFLV-GRDGRPYFLEMNT 282


>gi|325674010|ref|ZP_08153700.1| urea carboxylase [Rhodococcus equi ATCC 33707]
 gi|325555275|gb|EGD24947.1| urea carboxylase [Rhodococcus equi ATCC 33707]
          Length = 1195

 Score = 66.3 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 80/220 (36%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+    A  E   I +         +  +K  +++   + GVP+ P   +
Sbjct: 80  AIHPGYGFLSENEQFAAAAEQAGIEFVGPTPDQLRVFGNKHTAREAARAVGVPLVPGSGL 139

Query: 114 NRFTMDS---QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQL 166
                ++      I  P ++K + GG  +G+      +++          +++      +
Sbjct: 140 LESVEEALAEAERIGYPVMLKAVGGGGGIGMQACFTPEALRAAYDTVQRMAAANFSSSGV 199

Query: 167 LIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIY 224
            +E++V     +   V GD +                 L+  +       PA  +P  + 
Sbjct: 200 FLERFVARARHIEVQVFGDGAG-----RTVSLGTRDCSLQRRNQKVVEEAPASGLPDHVT 254

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +++ R +     ++  R     +F+FD    +  +LE+N 
Sbjct: 255 EQLLRSSRDLASSVNYRSAGTVEFVFDVDRGEASFLEMNT 294


>gi|187923242|ref|YP_001894884.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia
           phytofirmans PsJN]
 gi|187714436|gb|ACD15660.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia
           phytofirmans PsJN]
          Length = 404

 Score = 66.3 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 47/277 (16%), Positives = 93/277 (33%), Gaps = 38/277 (13%)

Query: 19  GKACASALEDAGFKVSQID----------------VDRSVGLVLAHL----KPDLAFNVL 58
           GK    AL+  G +V  +D                +D +    L  L    +P L    +
Sbjct: 27  GKEVIIALQRLGVEVIAVDRYPNAPGHQVAHRAHVIDMTDRAALRALVEQERPHLIVPEI 86

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKM-RSKQVVSSCGVPVCPSILVNRFT 117
                 D L  A +E   +        A+ L+M++    +      G+P  P    +   
Sbjct: 87  EAI-ATDAL--AAIESDGLAEVIPTARATQLTMNREGIRRLAAEELGLPTSPYAFADSLD 143

Query: 118 MDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH--GDQLLIEQYVD 173
                   +  P V+KP+   S  G  V++ D  +      + +       ++++E ++D
Sbjct: 144 ELRAGIAKVGYPCVVKPVMSSSGKGQSVLRSDADVEPAWQYALAGGRVNHGRVIVEGFID 203

Query: 174 ----GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
                 +LT   +  AS +V+               Y         P  +     +  + 
Sbjct: 204 FEYEITQLTVRAIDPASGEVSTYFCDPIGHVQVAGDY----VESWQPQPMSPLALERSRE 259

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
           +A     A+G RG+   +         V++ E++ +P
Sbjct: 260 VAHKVTAALGGRGLFGVELFVR--GDDVWFSEVSPRP 294


>gi|91782528|ref|YP_557734.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia
           xenovorans LB400]
 gi|123063079|sp|Q142Q7|PURT_BURXL RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|91686482|gb|ABE29682.1| formate-dependent phosphoribosylglycinamide formyltransferase
           [Burkholderia xenovorans LB400]
          Length = 404

 Score = 66.3 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 45/277 (16%), Positives = 93/277 (33%), Gaps = 38/277 (13%)

Query: 19  GKACASALEDAGFKVSQID----------------VDRSVGLVLAHL----KPDLAFNVL 58
           GK    AL+  G +V  +D                +D +    L  L    +P L    +
Sbjct: 27  GKEVIIALQRLGVEVIAVDRYPNAPGHQVAHRAHVIDMTDRAALRALVEQERPHLIVPEI 86

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKM-RSKQVVSSCGVPVCPSILVNRFT 117
                ++    A +E   +        A+ L+M++    +      G+P  P    +   
Sbjct: 87  EAIATDE---LAAIESAGLAEVIPTARATQLTMNREGIRRLAAEELGLPTSPYAFADSLD 143

Query: 118 MDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH--GDQLLIEQYVD 173
                   +  P V+KP+   S  G  V++ D  +      + +       ++++E ++D
Sbjct: 144 ELRAGIAKVGYPCVVKPVMSSSGKGQSVLRGDADVEPAWQYAMAGGRVNHGRVIVEGFID 203

Query: 174 ----GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
                 +LT   +  AS +V+               Y         P  +     +  + 
Sbjct: 204 FEYEITQLTVRAINPASGEVSTYFCDPIGHVQVAGDY----VESWQPQPMSPLALERSRE 259

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
           +A     A+G RG+   +         V++ E++ +P
Sbjct: 260 VAHKVTAALGGRGLFGVELFVR--GDDVWFSEVSPRP 294


>gi|13471012|ref|NP_102581.1| propionyl-CoA carboxylase alpha chain precursor [Mesorhizobium loti
           MAFF303099]
 gi|14021756|dbj|BAB48367.1| propionyl-CoA carboxylase alpha chain precursor [Mesorhizobium loti
           MAFF303099]
          Length = 670

 Score = 66.3 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 73/220 (33%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E       LE   I +      A     DK+ SK+  ++  V   P  L 
Sbjct: 77  AVHPGYGFLSERAAFCEALEKEGIVFIGPKPKAIKAMGDKIESKKFANAAKVSTVPGWLG 136

Query: 114 NRFTMDSQHL----ISPPYVIKPLKGGSSLGIIVIKKDQS----IPLDLLQSSSWNHGDQ 165
                D        I  P +IK   GG   G+ +                ++ S    D+
Sbjct: 137 VIENADHAEKIAGEIGYPVMIKASAGGGGKGMRIAWNQSEVRDGFDRARSEAKSSFGDDR 196

Query: 166 LLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE++ VD   +   V+ DA  +   +   +        K     +       +     
Sbjct: 197 VFIEKFVVDPRHIEIQVLADAHGNALYLGERECSIQRRNQK----VAEEAPSPFLDAKTR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K +   +    +A+  +     +F+ D   +  ++LE+N 
Sbjct: 253 KAMGEQSVALARAVDYQSAGTVEFIVDK-DKNFYFLEMNT 291


>gi|225680895|gb|EEH19179.1| pyruvate carboxylase [Paracoccidioides brasiliensis Pb03]
          Length = 1196

 Score = 66.3 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 88/221 (39%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
           ++H  +G   E+      +E   + +            DK+ ++++   CGVPV P    
Sbjct: 122 LVHPGYGFLSENAEFARNVEKAGLVFVGPTPDTIDALGDKVSARRLAVKCGVPVVPGTPG 181

Query: 112 LVNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGDQ 165
            V RF            P +IK   GG   G+ V++  +S+         ++ +      
Sbjct: 182 PVGRFEEVKAFTDEYGFPIIIKAAFGGGGRGMRVVRDQESLRDSFERATSEAKAAFGNGT 241

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDI 223
           + +E+++D    +   ++GD   ++  +           ++        + PA  +P+++
Sbjct: 242 VFVERFLDKPKHIEVQLLGDNHGNIVHLYE-----RDCSVQRRHQKVVEIAPAKDLPVEV 296

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              +   A    +++  R    ++FL D  +R  +++EIN 
Sbjct: 297 RDSILVDAVKLAKSVNYRNAGTAEFLVDQQNR-YYFIEINP 336


>gi|170079000|ref|YP_001735638.1| cyanophycin synthetase [Synechococcus sp. PCC 7002]
 gi|169886669|gb|ACB00383.1| cyanophycin synthetase [Synechococcus sp. PCC 7002]
          Length = 897

 Score = 66.3 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 51/119 (42%), Gaps = 4/119 (3%)

Query: 82  SGILASALSMDKMRSKQVVSSCGVPVCPS---ILVNRFTMDSQHLISPPYVIKPLKGGSS 138
           SGILA  L+ DK  +K +++  GVPV        ++      + +   P VIKPL G   
Sbjct: 209 SGILAVELACDKEGTKNILADAGVPVPRGTVIRYLDDLEDAIEDVGGYPIVIKPLDGNHG 268

Query: 139 LGIIV-IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK 196
            GI + IK           +S  +    +++E+Y  G +    V+    + V+E     
Sbjct: 269 RGITIDIKTWADAEHAYDLASEASKTRSVIVERYYKGSDHRVLVINGKLVAVSERVPAH 327


>gi|159037747|ref|YP_001537000.1| phosphoribosylglycinamide synthetase [Salinispora arenicola
           CNS-205]
 gi|157916582|gb|ABV98009.1| phosphoribosylglycinamide synthetase [Salinispora arenicola
           CNS-205]
          Length = 416

 Score = 66.3 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 40/185 (21%), Positives = 78/185 (42%), Gaps = 19/185 (10%)

Query: 91  MDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQ 148
            DK +++Q +++ GVP   S+ VN  +  + +   I  P ++KP   G+SLG++ +    
Sbjct: 114 RDKAQTRQALAAAGVPQPRSVPVNSVQEALLAAAAIGYPVILKPRGLGASLGVVRVDDSD 173

Query: 149 SIPL--------DLLQSSSWNHGDQLLIEQYVDGIELTC-GVMGDASLDVTEIAVPKSDF 199
            +                 ++    +L+EQ V G E++   V+ D  +    +A  K  +
Sbjct: 174 GLRRLFPFTHGTTAPDPVQYSTDAPVLVEQCVCGTEVSVDAVVTDGQVVPLFVARKKVGY 233

Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR-GISRSDFLFDPLSRKVF 258
             Y  +       H++ A  PL        L    H A+G R G + ++++         
Sbjct: 234 PPYAEEVG-----HLVDAADPLLHDGAFVDLLQRTHGALGFRDGCTHTEYMLTE--NGPQ 286

Query: 259 WLEIN 263
            +E+N
Sbjct: 287 LIEVN 291


>gi|161621312|ref|YP_560454.2| acetyl-CoA carboxylase biotin carboxylase subunit [Burkholderia
           xenovorans LB400]
 gi|296160498|ref|ZP_06843314.1| acetyl-CoA carboxylase, biotin carboxylase [Burkholderia sp. Ch1-1]
 gi|295889247|gb|EFG69049.1| acetyl-CoA carboxylase, biotin carboxylase [Burkholderia sp. Ch1-1]
          Length = 455

 Score = 66.3 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 34/222 (15%), Positives = 78/222 (35%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         +  DK+ +KQ +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAERVEQSGFTFIGPRPETIRMMGDKVTAKQTMIKTGVPCVPGSEG 136

Query: 112 ---LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
                 +  +     +  P +IK   GG   G+ V+  + ++   +     ++       
Sbjct: 137 ALPEDPKEIVKIARQVGYPVIIKAAGGGGGRGMRVVHTEAALVNAVNMTREEAGRAFGNP 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
           Q+ +E++++    +   V+ D+  +   +            K          PA  I   
Sbjct: 197 QVYMEKFLENPRHIEIQVLADSFKNAVWLGERDCSMQRRHQK-----VIEEAPAPGIARR 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +   +      A + +G  G    +FL+   + + +++E+N 
Sbjct: 252 LIDRIGDRCADACKKMGYLGAGTFEFLY--ENGEFYFIEMNT 291


>gi|145640642|ref|ZP_01796225.1| acetyl-CoA carboxylase [Haemophilus influenzae R3021]
 gi|145274568|gb|EDK14431.1| acetyl-CoA carboxylase [Haemophilus influenzae 22.4-21]
          Length = 448

 Score = 65.9 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 40/225 (17%), Positives = 85/225 (37%), Gaps = 27/225 (12%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+      +E     +         L  DK+ + + +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAEQVERSGFTFIGPTADVIRLMGDKVSAIKAMKKAGVPCVPGSDG 136

Query: 111 -----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWN 161
                I  N+   +    I  P +IK   GG   G+ V++ + ++   +     ++ +  
Sbjct: 137 PVGNDITKNK---EIAKRIGYPIIIKASGGGGGRGMRVVRSEDALEESIAMTKAEAKAAF 193

Query: 162 HGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-I 219
           + D + +E+Y++    +   V+ D   +   +A           K          PA  I
Sbjct: 194 NNDMVYMEKYLENPRHVEIQVLADTHGNAVYLAERDCSMQRRHQK-----VVEEAPAPGI 248

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             ++ +++      A   IG RG    +FL+   + + +++E+N 
Sbjct: 249 TEEVRRDIGSRCANACVEIGYRGAGTFEFLY--ENGEFYFIEMNT 291


>gi|134094395|ref|YP_001099470.1| carbamoyl phosphate synthase, large subunit [Herminiimonas
           arsenicoxydans]
 gi|133738298|emb|CAL61343.1| carbamoyl phosphate synthase, large subunit (Carbamoyl-phosphate
           synthetase ammonia chain) [Herminiimonas arsenicoxydans]
          Length = 1076

 Score = 65.9 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 46/278 (16%), Positives = 97/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +              DV        ++V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYKVILVNSNPATIMTDPEMADVTYIEPITWQAVERIIDKERPDAILP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      +L         +   A   + D+ + K  ++  G+    S +
Sbjct: 89  TMGGQTALNCALDLHHNGVLTKYGCELIGASPEAIDKAEDRSKFKDAMTKIGLGSARSGV 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +    +   Q  +  P +I+P       G  +    +       +    +   +LLIE+
Sbjct: 149 AHTLEESWAVQKELGFPSIIRPSFTMGGSGGGIAYNAEEFEAICKRGLEASPTSELLIEE 208

Query: 171 YVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + + +   ++   D           +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEFEMEVVRDKADNCIIVCSIENLDPMGVHT----GDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P   ++  +E+N 
Sbjct: 265 RNASIAVLREIGVDTGGSNVQFAINPEDGRMIIIEMNP 302



 Score = 64.8 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/202 (14%), Positives = 77/202 (38%), Gaps = 12/202 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           LE   +P   +       + D+ R +++++  G+   P+         +     I  P V
Sbjct: 648 LEANGVPIVGTSPDMIDAAEDRERFQKLLNDLGLRQPPNRTARTEEDALRLAQEIGYPLV 707

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++ + + +   + ++   +H   +L+++++ D IE+    + D    
Sbjct: 708 VRPSYVLGGRAMEIVHEQRDLERYMREAVKVSHDSPVLLDRFLNDAIEVDVDCLSDGERT 767

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                +   +       +S  ++  + P  +  +   E++R   L  + +   G+    F
Sbjct: 768 FIGGVMEHIEQAGV---HSGDSACSLPPYSLSQETINELKRQTSLMAKGLNVIGLMNVQF 824

Query: 249 LF--DPLSRK----VFWLEINV 264
                 +  K    VF LE+N 
Sbjct: 825 AIQQQEIDGKLQDVVFVLEVNP 846


>gi|114328029|ref|YP_745186.1| phosphoribosylaminoimidazole carboxylase ATPase subunit
           [Granulibacter bethesdensis CGDNIH1]
 gi|114316203|gb|ABI62263.1| phosphoribosylaminoimidazole carboxylase NCAIR mutase subunit
           [Granulibacter bethesdensis CGDNIH1]
          Length = 379

 Score = 65.9 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 41/206 (19%), Positives = 82/206 (39%), Gaps = 13/206 (6%)

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN-RFTMDSQ- 121
           E+   + +  L  +   H       +S D++  K  ++  G+P  P   V  R  +D   
Sbjct: 78  ENVSAEGLDLLASLKPVHPSPTILRISQDRLAEKTFLNDAGIPTAPWHAVTSRAELDEAV 137

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCG 180
             +  P ++K  + G        +   + P DL ++        L++E +VD  +E++  
Sbjct: 138 TALGYPCILKTTRLG---YDGKGQARLNGPDDLDEAWETLSPRPLVLEGFVDFAMEISVV 194

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V   AS  +      ++    + L  +      + PA++P +  +  Q +A    +A+G 
Sbjct: 195 VARSASGTIAAFDTVENRHRHHILDLT------LAPARVPEETARAAQTIARKVAEALGL 248

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQP 266
            G+   +   D   R V   EI  +P
Sbjct: 249 IGLLAVEMFVDAQGR-VLVNEIAPRP 273


>gi|319783853|ref|YP_004143329.1| carbamoyl-phosphate synthase L chain ATP-binding protein
           [Mesorhizobium ciceri biovar biserrulae WSM1271]
 gi|317169741|gb|ADV13279.1| Carbamoyl-phosphate synthase L chain ATP-binding protein
           [Mesorhizobium ciceri biovar biserrulae WSM1271]
          Length = 670

 Score = 65.9 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 74/220 (33%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E       LE   I +      A     DK+ SK+  ++  V   P  L 
Sbjct: 77  AVHPGYGFLSERAAFCEALEAEGIIFIGPKPKAIKAMGDKIESKKFANAAKVSTVPGWLG 136

Query: 114 NRFTMDSQHL----ISPPYVIKPLKGGSSLGIIVIKKDQS----IPLDLLQSSSWNHGDQ 165
                D        I  P +IK   GG   G+ +   +            ++ S    D+
Sbjct: 137 VIENADHAEKIAGEIGYPVMIKASAGGGGKGMRIAWSEAEVRDGFDRARSEAKSSFGDDR 196

Query: 166 LLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           L IE++ VD   +   V+ DA  +   +   +        K     +       +     
Sbjct: 197 LFIEKFVVDPRHIEIQVLADAHGNALYLGERECSIQRRNQK----VAEEAPSPFLDAATR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K +   +    +A+  +     +F+ D   +  ++LE+N 
Sbjct: 253 KAMGEQSVALAKAVDYQSAGTVEFIVDK-DKNFYFLEMNT 291


>gi|87198837|ref|YP_496094.1| carbamoyl-phosphate synthase L chain, ATP-binding [Novosphingobium
           aromaticivorans DSM 12444]
 gi|87134518|gb|ABD25260.1| biotin carboxyl carrier protein / biotin carboxylase
           [Novosphingobium aromaticivorans DSM 12444]
          Length = 673

 Score = 65.9 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 35/223 (15%), Positives = 74/223 (33%), Gaps = 19/223 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H  +G   E       L    I +    + A A   DK+ SK++    GV V P  + 
Sbjct: 77  AVHPGYGFLSERTSFAEALAAEGIEFIGPPVGAIAAMGDKIESKKLAKEAGVNVVPGFVG 136

Query: 113 ---VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
                   +     I  P ++K   GG   G+ +   ++ +                 D+
Sbjct: 137 EIEDTEHAVRISDEIGYPVMMKASAGGGGKGMRLAYNEKDVREGFEAVKREGLNSFGDDR 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+++ +   +   ++GD   ++  +   +        K             +   + 
Sbjct: 197 VFIEKFILNPRHIEIQILGDKHGNILYLNERECSIQRRHQK----VVEEAPSPFVTPKMR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLF---DPLSRKVFWLEINV 264
           K +        +A+G       + +    DP     ++LE+N 
Sbjct: 253 KAMGEQCVALARAVGYYSAGTVELIVSGADPSGESFYFLEMNT 295


>gi|313149758|ref|ZP_07811951.1| pyruvate carboxylase subunit A [Bacteroides fragilis 3_1_12]
 gi|313138525|gb|EFR55885.1| pyruvate carboxylase subunit A [Bacteroides fragilis 3_1_12]
          Length = 506

 Score = 65.9 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 80/220 (36%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+           I +            DK+ ++  +    VPV P    
Sbjct: 79  AIHPGYGFLSENATFARRCREEGIIFIGPDPETMEAMGDKISARIKMIEASVPVVPGTQE 138

Query: 114 NRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
           N  +++      + I  P ++K   GG   G+ +I +   +      + S +      D 
Sbjct: 139 NLKSLEEAVELCNQIGYPVMLKASMGGGGKGMRLIHRADEVEEAYTTAKSESLSSFGDDT 198

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E++V+    +   ++GD   +V  +   +        K             +  ++ 
Sbjct: 199 VYLEKFVEEPHHIEFQILGDKYGNVIHLCERECSVQRRNQKI----VEESPSVFVTPELR 254

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +++   A  A +A+   G    +FL D   R  ++LE+N 
Sbjct: 255 RDMGEKAVAAAKAVNYVGAGTIEFLVDKH-RNYYFLEMNT 293


>gi|296119119|ref|ZP_06837691.1| acetyl/propionyl-CoA carboxylase, alpha subunit [Corynebacterium
           ammoniagenes DSM 20306]
 gi|295967954|gb|EFG81207.1| acetyl/propionyl-CoA carboxylase, alpha subunit [Corynebacterium
           ammoniagenes DSM 20306]
          Length = 576

 Score = 65.9 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 33/222 (14%), Positives = 66/222 (29%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      +    + +      A  L  DK+ +++V    G P+ P    
Sbjct: 78  AIHPGYGFLSENADFARAVIDAGMIWVGPQPEAIELLGDKIAARRVAEEVGAPLAPGTSD 137

Query: 114 NRFTM----DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS-----SSWNHGD 164
                    +       P  IK   GG   G+ V+     I      +      ++    
Sbjct: 138 PIDDWQQAREFAEEHGLPIAIKAAYGGGGRGLKVVHNIDDIESAFNSAGREAMEAFGRA- 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
           +  +E+++     +   V+ D     T   V          +          PA  +   
Sbjct: 197 ECYVEKFLTHPRHVEAQVLAD-----THGTVAVLGTRDCSTQRRFQKLIEEAPAPSLSDA 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
               +   A      +G  G    +F+       + +LE+N 
Sbjct: 252 QRDGIIEGARSICSKVGYTGAGTVEFIVSE-DGTISFLEVNT 292


>gi|218885521|ref|YP_002434842.1| pyruvate carboxylase [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218756475|gb|ACL07374.1| Carbamoyl-phosphate synthase L chain ATP-binding protein
           [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 1234

 Score = 65.9 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 45/264 (17%), Positives = 98/264 (37%), Gaps = 32/264 (12%)

Query: 19  GKACASALEDAGFKVS-QIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILEL 74
             + A  L   G      +D+D    + LA  +       +H  +G   ED    A  + 
Sbjct: 55  AASAAQELLLLGSDPRAYLDIDH--IIALAKQR---GIVAIHPGWGFASEDERFPAKCKA 109

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS------ILVNRFTMDSQHLISPPY 128
             + +  S   A  L  +K++ +++     +PV P       I   R  +D    I  P 
Sbjct: 110 AGLTFIGSTAEAMNLLGNKVQVRKLAKKLDIPVVPGSEGAVDIPTARTIIDE---IGLPV 166

Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQLLIEQYVDG-IELTCGVMG 183
           ++K   GG   GI  I + + +    +++S+         +L +E+Y+     +   V+ 
Sbjct: 167 MLKAEGGGGGRGIFAIHRAEELSDAFMKASTMAQASFGNPRLYVEKYLPSVRHIEIQVIA 226

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK---IPLDIYKEVQRLAFLAHQAIGC 240
           D   +V        D     ++ +      + P+    I  ++ + ++  + +  + +G 
Sbjct: 227 DMYGNVFAF-----DERDCTVQRNHQKLIEITPSPWSGITPELRERLKEYSRMLVREVGY 281

Query: 241 RGISRSDFLFDPLSRKVFWLEINV 264
             +   +FL        + +E+N 
Sbjct: 282 HSLCTVEFLVTA-DGTPYLIEVNT 304


>gi|222110656|ref|YP_002552920.1| carbamoyl-phosphate synthase large subunit [Acidovorax ebreus TPSY]
 gi|221730100|gb|ACM32920.1| carbamoyl-phosphate synthase, large subunit [Acidovorax ebreus
           TPSY]
          Length = 1083

 Score = 65.9 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 23/206 (11%), Positives = 71/206 (34%), Gaps = 23/206 (11%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--FTMDSQHLISPPYV 129
           LE   +P   +       + D+ R ++++   G+   P+         ++    +  P V
Sbjct: 655 LEAAGVPIIGTTPDMIDAAEDRERFQKLLGDLGLRQPPNATARTEPEALEKAAALGYPLV 714

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG---------IELTCG 180
           ++P        + ++ + + +   + ++   ++   +L+++++            + +  
Sbjct: 715 VRPSYVLGGRAMEIVHEQRDLERYMREAVKVSNDSPVLLDRFLSNAIECDVDCVRDASGA 774

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V     ++  E A   S            ++  + P  +  +   E++R        +  
Sbjct: 775 VFIGGVMEHIEQAGVHSG----------DSACSLPPYYLKAETVAEIKRQTTAMAHGLNV 824

Query: 241 RGISRSDFLFDPLSRK--VFWLEINV 264
            G+    F          ++ LE+N 
Sbjct: 825 VGLMNVQFAIQETDDGDVIYVLEVNP 850



 Score = 62.1 bits (150), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 49/278 (17%), Positives = 101/278 (36%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  I              DV        ++V  ++A  +PD    
Sbjct: 29  SGVQACKALREEGYKVILINSNPATIMTDPATADVTYIEPITWQTVEKIIAKERPDAILP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      +L   ++    +   A   + D+++ K  ++  G+    S +
Sbjct: 89  TMGGQTALNCALDLWRNGVLHKYKVELIGATPEAIDKAEDRLKFKDAMTRIGLGSARSGI 148

Query: 113 VNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +        Q  +  P VI+P       G  +    +       +    +  ++LLIE+
Sbjct: 149 AHSMDEAWAVQKNVGFPTVIRPSFTLGGTGGGIAYNPEEFETICKRGLEASPTNELLIEE 208

Query: 171 YVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + + +   ++   D           +S  V PA+ +    Y+ +
Sbjct: 209 SLLGWKEYEMEVVRDKADNCIIVCSIENLDPMGVHT----GDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P   ++  +E+N 
Sbjct: 265 RNASLAVLREIGVDTGGSNVQFSVNPKDGRMIVIEMNP 302


>gi|193212670|ref|YP_001998623.1| phosphoribosylglycinamide formyltransferase 2 [Chlorobaculum parvum
           NCIB 8327]
 gi|193086147|gb|ACF11423.1| phosphoribosylglycinamide formyltransferase 2 [Chlorobaculum parvum
           NCIB 8327]
          Length = 392

 Score = 65.9 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 41/253 (16%), Positives = 87/253 (34%), Gaps = 35/253 (13%)

Query: 32  KVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSM 91
           +V  +    ++  ++A  KPD+    +     E           +       ++ SA + 
Sbjct: 47  EVIDMLDGNALDAIVAKHKPDIIVPEIEAIRTE--------RFYDYEQQGIQMVPSARAA 98

Query: 92  D-----KMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVI 144
           +     K          G+     +          +   +  P V+KPL   S  G   +
Sbjct: 99  NFTMNRKAIRDLAARDLGLRTANYLYAASLDELRTAVAEVGLPCVVKPLMSSSGKGQSTV 158

Query: 145 KKDQSIPLDLLQSSSWNHGD--QLLIEQYV----DGIELTCGVMGDASLDVTEIAVPKSD 198
           + +  I      S S   GD  ++++E +V    +   LT       +L    I   + +
Sbjct: 159 RSEADIEKAWSYSQSGKRGDIAEVIVEAFVAFHTEITLLTVTQKNGPTLFCPPIG-HRQE 217

Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
              Y+  +         P +I  +   + Q++A    +A+   GI   +F        ++
Sbjct: 218 RGDYQESW--------QPCRISPEHLSQAQQIAGKVTEALSGAGIWGVEFFLAADG--LY 267

Query: 259 WLEINVQP---GM 268
           + E++ +P   GM
Sbjct: 268 FSELSPRPHDTGM 280


>gi|124485095|ref|YP_001029711.1| ornithine carbamoyltransferase [Methanocorpusculum labreanum Z]
 gi|124362636|gb|ABN06444.1| protein of unknown function DUF201 [Methanocorpusculum labreanum Z]
          Length = 301

 Score = 65.9 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 55/274 (20%), Positives = 99/274 (36%), Gaps = 63/274 (22%)

Query: 19  GKACASALEDA----GFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAI--- 71
           GKA  SAL+ +    G  V            +A L PD  + ++      D ++      
Sbjct: 20  GKAMVSALKKSFEACGHTVVM-PTGSDFDAEIARLAPDCEYGLVIAP---DEVLAKYTHT 75

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIK 131
           LEL       S   A A+   K  S ++++  G+ V           +         VIK
Sbjct: 76  LELATHN-IGSDSTAVAVCASKRLSGKLLAKVGIDVP---------AEVPADYPGKRVIK 125

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS----- 186
           P+KG  S+G+ + K D  +P             ++ +E Y++G   +  ++G        
Sbjct: 126 PIKGAGSVGVRIAK-DGELP----------GDGEMSVE-YLEGEHFSVSIIGSRVVGEAC 173

Query: 187 -----LDVTE-------IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
                L             V +   ++Y         T V P +       E+  +A  A
Sbjct: 174 GFYSGLPPIFLTINRQLCEVREDGTFAY-----HGGETPVHPPR-----EAEMIEVAKKA 223

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268
            + +GC+G    D +      K++ +++N +P M
Sbjct: 224 IETLGCQGYVGLDMIV---GEKIWVVDVNPRPTM 254


>gi|228940975|ref|ZP_04103533.1| Carbamoyl-phosphate synthase large chain [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228973906|ref|ZP_04134481.1| Carbamoyl-phosphate synthase large chain [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228980495|ref|ZP_04140805.1| Carbamoyl-phosphate synthase large chain [Bacillus thuringiensis
           Bt407]
 gi|228779315|gb|EEM27572.1| Carbamoyl-phosphate synthase large chain [Bacillus thuringiensis
           Bt407]
 gi|228785772|gb|EEM33776.1| Carbamoyl-phosphate synthase large chain [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228818654|gb|EEM64721.1| Carbamoyl-phosphate synthase large chain [Bacillus thuringiensis
           serovar berliner ATCC 10792]
          Length = 1018

 Score = 65.9 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 26/221 (11%), Positives = 80/221 (36%), Gaps = 20/221 (9%)

Query: 68  VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLIS 125
           + A LE   +    + +     + D+ + +  ++  G+P             +     I 
Sbjct: 588 LAAKLEAHGVKILGTSLEDLDRAEDRDKFEAALTKLGIPQPVGKTATTVEQAVAIAEEIG 647

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            P +++P        + ++ + + +   +  +   +    +LI++Y+ G E+    + D 
Sbjct: 648 YPVLVRPSYVLGGRAMEIVYRQEELLHYMKNAVKVHADHPVLIDRYMVGKEIEVDAISDG 707

Query: 186 S---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCR 241
               +      + ++  +S        +S  V P + +   + +++        + +   
Sbjct: 708 ENVFIPGIMEHIERAGVHS-------GDSIGVYPPQSLSEKLKEQIIEHTIALGKGLNIV 760

Query: 242 GISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277
           G+    F+      +V+ +E+N       P ++ ++  P  
Sbjct: 761 GLLNIQFVVFK--DQVYVIEVNPRASRTVPFLSKITGVPMA 799



 Score = 65.5 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 42/260 (16%), Positives = 96/260 (36%), Gaps = 13/260 (5%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMR 95
             V  ++   +PD     L G  G +  V+     ILE   +    + + A   + D+  
Sbjct: 18  EFVSRIIRKERPDAILPTLGGQTGLNMAVELAKSGILEECGVEILGTKLSAIEQAEDRDL 77

Query: 96  SKQVVSSCGVPVCPSILVNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153
            + ++     P+  S +++      +    I  P +++P       G  +   ++ +   
Sbjct: 78  FRTLMQDLNEPIPSSTIIHTLEEAHEFVKEIGYPVIVRPAFTMGGTGGGICSNEEELIEI 137

Query: 154 LLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212
           +      +   Q L+E+ + G  E+   VM D++ +   I V   +       ++  +  
Sbjct: 138 VSGGLKHSPVTQCLLEKSIAGCKEIEYEVMRDSNDNA--IVVCNMENIDPVGVHTGDSIV 195

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
                 +    Y+ ++  +    +A+G  G        DP S + + +E+N  P ++  S
Sbjct: 196 VAPSQTLSDREYQMLRNTSLRIIRALGIEGGCNVQLALDPHSFQYYVIEVN--PRVSRSS 253

Query: 273 IFPEMAAYAGYSFRELLLWM 292
                +   GY   +L   +
Sbjct: 254 --ALASKATGYPIAKLAAKI 271


>gi|225621306|ref|YP_002722564.1| carbamoyl phosphate synthase large subunit [Brachyspira
           hyodysenteriae WA1]
 gi|225216126|gb|ACN84860.1| carbamoyl phosphate synthase large subunit [Brachyspira
           hyodysenteriae WA1]
          Length = 1065

 Score = 65.9 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 44/289 (15%), Positives = 105/289 (36%), Gaps = 39/289 (13%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLA------------------- 47
           G ++E + +   G     +L++ G++V  I+ + +  +  A                   
Sbjct: 21  GQAAEFDYA---GTQACQSLKEEGYEVILINSNPATIMTDAAVADKVYIEPINLNFAKRI 77

Query: 48  --HLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
               +PD     L G  G + +V+     IL+   +    + + A   + D+   K++++
Sbjct: 78  IYKERPDAILGSLGGQTGLNLVVELAESGILDEYNVEVLGTDLNAINCAEDRELFKKLMN 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
               PV  S++V+     ++  + I    V++P       G    + ++ +         
Sbjct: 138 DINEPVPESVIVHSVEEAIEFANKIGYHLVVRPAYTLGGTGGGFARNEKELIEICETGLK 197

Query: 160 WNHGDQLLIEQYVDG---IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216
            +   + L+E+ + G   IE       + +  V            +     + +S  V P
Sbjct: 198 ISPVHECLVEKSIAGYKEIEYEVMRDNNDNAIVVCNMENVDPVGIH-----TGDSIVVAP 252

Query: 217 AK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +     + ++ ++    +A+   G        DP S K + +E+N 
Sbjct: 253 CQTLSDRENQMLRNVSLKIIRALKICGGCNVQLALDPKSFKYYIIEVNP 301



 Score = 60.1 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 30/219 (13%), Positives = 81/219 (36%), Gaps = 21/219 (9%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           L +  +    + +     + D+   ++++ +  +P             +   + I  P +
Sbjct: 646 LVMHGVNILGTSLENINKAEDRHEFEEMLKTLNIPQPKGETAITVDEALVIANDIGYPVL 705

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW-NHGDQLLIEQYVDGIELTCGVMGDAS-- 186
           ++P        + ++  D S+ + +  +    ++   +LI++YV G E+    + D+   
Sbjct: 706 VRPSYVLGGRAMEIVDNDASLKVYMETAVKEVSNKAPILIDRYVIGKEIEIDAIADSENN 765

Query: 187 --LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGI 243
             +      + ++  +S        +S  V P + I   + + +   A          G+
Sbjct: 766 VFIPGIMEHIERAGIHS-------GDSISVYPTQTISNKVKETIIDYAKRIGIGFNFIGL 818

Query: 244 SRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277
               F+ D  +  V+ LE+N       P ++ ++  P  
Sbjct: 819 YNIQFIVDKENN-VYVLEVNPRSSRTVPFLSKITNVPMA 856


>gi|166159376|gb|ABY83168.1| Azi30 [Streptomyces sahachiroi]
          Length = 287

 Score = 65.9 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 50/283 (17%), Positives = 102/283 (36%), Gaps = 30/283 (10%)

Query: 22  CASALEDAGFKVSQIDVDRSVGLVLAHLKPDL-AFNVLHGNFGEDGLVQAILELLEIPYT 80
              A E  G +   +D  R + L+LA  +P   A  +   +      V   LE L +P T
Sbjct: 17  ILEAFERLGLRCEHVDP-RGLRLLLADGRPPYRAALMREVSHSRAASVATTLEALGVP-T 74

Query: 81  HSGILASALSMDKMRSKQVVSSCGV--PVCPSILVNRFTMDSQHLISPPYVIKPLKGGSS 138
           ++      +  DK+R+     S G+  P   +       +++   +  P V+KP+ G   
Sbjct: 75  YNRPRVLDVCGDKLRTALAFHSAGLRMPQAAATWGTGAALEAMPKLGYPVVVKPVTGSWG 134

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQ--LLIEQYVD--GIELTCGVMGDASLDVTEIAV 194
                ++ ++     L   ++  +  Q    +++++D  G ++   V GD  +     A+
Sbjct: 135 HLTTRVRDEEQGRAVLEHRAALPNPQQHVFFLQEHIDKPGRDIKAYVAGDRVI----CAI 190

Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA-IGCRGISRSDFLFDPL 253
            K+    +    +   +    P  I  ++ +     A       +G       D L D  
Sbjct: 191 YKNAVDDWRTNTAIGGAA--TPCPITPELTELAVAAAHAVGGGFLG------VDLLIDQQ 242

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE-LLLWMVED 295
            R ++  E+N  P               G    + ++ W V +
Sbjct: 243 ER-LYANEVNHTPEFHG------AVDATGIDVAQGIVEWAVAE 278


>gi|187925399|ref|YP_001897041.1| acetyl-CoA carboxylase biotin carboxylase subunit [Burkholderia
           phytofirmans PsJN]
 gi|187716593|gb|ACD17817.1| acetyl-CoA carboxylase, biotin carboxylase [Burkholderia
           phytofirmans PsJN]
          Length = 455

 Score = 65.9 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 34/222 (15%), Positives = 78/222 (35%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         +  DK+ +KQ +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAERVEQSGFTFIGPRPETIRMMGDKVTAKQTMIKTGVPCVPGSEG 136

Query: 112 ---LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
                 +  +     +  P +IK   GG   G+ V+  + ++   +     ++       
Sbjct: 137 ALPEDPKEIVKIARQVGYPVIIKAAGGGGGRGMRVVHTEAALVNAVNMTREEAGRAFGNP 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
           Q+ +E++++    +   V+ D+  +   +            K          PA  I   
Sbjct: 197 QVYMEKFLENPRHIEIQVLADSFKNAVWLGERDCSMQRRHQK-----VIEEAPAPGIARR 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +   +      A + +G  G    +FL+   + + +++E+N 
Sbjct: 252 LIDRIGDRCADACKKMGYLGAGTFEFLY--ENGEFYFIEMNT 291


>gi|172045668|sp|O58056|PURT_PYRHO RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
          Length = 430

 Score = 65.9 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 49/283 (17%), Positives = 100/283 (35%), Gaps = 45/283 (15%)

Query: 19  GKACASALEDAGFKVSQID-------------------VDRSVGL-VLAHLKPDLAFNVL 58
           GK  A   +  G +V  +D                   +D+     V+   KPD     +
Sbjct: 28  GKEIAIEAQRLGVEVVAVDRYANAPAMQVAHRSYVGNMMDKDFLWSVVEREKPDAIIPEI 87

Query: 59  HGNFGEDGLVQAILELLEIPY-THSGILASALSMDKMRSKQ-VVSSCGVPVCPSILVNRF 116
                    + A+ E  +  Y       A+ ++M + R ++ +V    VP    +     
Sbjct: 88  EAIN-----LDALFEFEKDGYFVVPNARATWIAMHRERLRETLVKEAKVPTSRYMYATTL 142

Query: 117 TM--DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS--SWNHGDQLLIEQYV 172
               ++   I  P   K +   S  G   +K  + IP    ++   +    +++++E+++
Sbjct: 143 DELYEACEKIGYPCHTKAIMSSSGKGSYFVKGPEDIPKAWEEAKTKARGSAEKIIVEEHI 202

Query: 173 DGIELTCGVMG----DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           D  ++    +     D + ++          Y  +  Y +       PA+I     +EV 
Sbjct: 203 D-FDVEVTELAVRHFDENGEIVTTFPKPVGHYQIDGDYHASW----QPAEISEKAEREVY 257

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP---GM 268
           R+A      +G  GI   +        KV+  E++ +P   GM
Sbjct: 258 RIAKRITDVLGGLGIFGVEMFV--KGDKVWANEVSPRPHDTGM 298


>gi|161523547|ref|YP_001578559.1| acetyl-CoA carboxylase biotin carboxylase subunit [Burkholderia
           multivorans ATCC 17616]
 gi|189351683|ref|YP_001947311.1| acetyl-CoA carboxylase biotin carboxylase subunit [Burkholderia
           multivorans ATCC 17616]
 gi|160340976|gb|ABX14062.1| Carbamoyl-phosphate synthase L chain ATP-binding [Burkholderia
           multivorans ATCC 17616]
 gi|189335705|dbj|BAG44775.1| biotin carboxylase [Burkholderia multivorans ATCC 17616]
          Length = 496

 Score = 65.9 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 76/220 (34%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+    A +E   + +        A   DK R++       VP  P    
Sbjct: 91  AIHPGYGFLSENAAFAAQVEAAGLVFVGPDAQVIATMGDKARARDTARRANVPTVPGSDG 150

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK----DQSIPLDLLQSSSWNHGDQ 165
            +       +    I  P +IK   GG   GI V       +  +PL   ++ +      
Sbjct: 151 VVQSLDAAREVAARIGYPVMIKAAAGGGGRGIRVAHDAAQLEAELPLAQREAQAAFGDGG 210

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+++     +   V+GD   DV  +   +        K             +   + 
Sbjct: 211 VYLERFIARARHIEVQVLGDGR-DVVHLFERECSLQRRRQKIL----EEAPSPSLTPALR 265

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            E+   A    + +G R     ++LFD    + +++E+N 
Sbjct: 266 AELCASATRLAREVGYRSAGTLEYLFDDTRGEFYFIEMNT 305


>gi|222056052|ref|YP_002538414.1| protein of unknown function DUF201 [Geobacter sp. FRC-32]
 gi|221565341|gb|ACM21313.1| protein of unknown function DUF201 [Geobacter sp. FRC-32]
          Length = 395

 Score = 65.9 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 37/226 (16%), Positives = 76/226 (33%), Gaps = 19/226 (8%)

Query: 69  QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPY 128
           Q  L+   +            + +K R   + +  G+    +  +    +     +  P 
Sbjct: 91  QKFLQHTNV--VVPDYDQILTAHNKDRWGALAAELGIRCPATFEIEDVRLGRADRLPFPV 148

Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG-DQLLIEQYVDGIELTCGVMGDASL 187
           +IKP +GG   GI+ +   Q +   L +   W    ++  I+Q +DG      ++     
Sbjct: 149 LIKPKQGGGGWGIVQVDSPQEMESLLSRDDHWGRPWERFFIQQKIDGQTHCVAMLFRQG- 207

Query: 188 DVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
                 V      SY +K         +  K   D  + +          +   G+ ++D
Sbjct: 208 -EYRAKVGYRQLRSYPIKCGQATLRISVEHKGAEDSLQRLLEE-------MKWHGVCQAD 259

Query: 248 FLFDPLSRKVFWLEINV-QPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           F+ +  S   + +++N    G    SI        G  F  L+  +
Sbjct: 260 FIVEKCSGVPYLIDVNPRFWGSLAQSI------ACGVDFPYLVYKI 299


>gi|103486710|ref|YP_616271.1| carbamoyl-phosphate synthase L chain, ATP-binding [Sphingopyxis
           alaskensis RB2256]
 gi|98976787|gb|ABF52938.1| Carbamoyl-phosphate synthase L chain, ATP-binding [Sphingopyxis
           alaskensis RB2256]
          Length = 668

 Score = 65.9 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 34/223 (15%), Positives = 77/223 (34%), Gaps = 19/223 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H  +G   E       L    I +    + A A   DK+ SK++    GV V P  + 
Sbjct: 77  AVHPGYGFLSERTSFAEALAKENIAFIGPPVNAIAAMGDKIESKKLAKEAGVNVVPGFVG 136

Query: 113 ---VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
                   ++  + I  P ++K   GG   G+ +   ++ +      +          D+
Sbjct: 137 EIRDTEHAVEISNEIGYPVMMKASAGGGGKGMRLAYDEKDVREGFEATKREGLNSFGDDR 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+++ +   +   ++GD   ++  +   +        K             +   + 
Sbjct: 197 VFIEKFILNPRHIEIQILGDQHGNILYLNERECSIQRRHQK----VVEEAPSPFVTPKMR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLF---DPLSRKVFWLEINV 264
           + +        +A+G       + +    DP     ++LE+N 
Sbjct: 253 QAMGEQCVALARAVGYYSAGTVELIVSGADPTGESFYFLEMNT 295


>gi|319949093|ref|ZP_08023187.1| putative acyl-CoA carboxylase alpha subunit [Dietzia cinnamea P4]
 gi|319437242|gb|EFV92268.1| putative acyl-CoA carboxylase alpha subunit [Dietzia cinnamea P4]
          Length = 595

 Score = 65.9 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 35/222 (15%), Positives = 72/222 (32%), Gaps = 22/222 (9%)

Query: 57  VLHGNFG---EDGLV-QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            +H  +G   E+    QA+++   + +      A     DK+ ++ +      P+     
Sbjct: 84  AIHPGYGFLSENADFAQAVID-AGLIWIGPPPQAIRDLGDKVTARHIAERANAPMAAGTK 142

Query: 113 VNRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQS----IPLDLLQSSSWNHGD 164
                 D           P  IK   GG   G+ V  K +           ++++     
Sbjct: 143 DPVANADEVVKFAEQYGLPIAIKAAFGGGGRGMKVAHKMEEVAELFESATREATAAFGRG 202

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
           +  +EQY+D    +   V+ D   +V       +      L+          PA  +  +
Sbjct: 203 ECFVEQYLDKARHVEAQVLADQHGNVIV-----AGTRDCTLQRRFQKLVEEAPAPFLTDE 257

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             K +   A    +  G  G    +++       + +LE+N 
Sbjct: 258 QRKRIHDSAKAICKEAGYYGAGTVEYMV--QGDTISFLEVNT 297


>gi|255011923|ref|ZP_05284049.1| putative biotin carboxylase 2 [Bacteroides fragilis 3_1_12]
          Length = 504

 Score = 65.9 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 80/220 (36%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+           I +            DK+ ++  +    VPV P    
Sbjct: 77  AIHPGYGFLSENATFARRCREEGIIFIGPDPETMEAMGDKISARIKMIEASVPVVPGTQE 136

Query: 114 NRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
           N  +++      + I  P ++K   GG   G+ +I +   +      + S +      D 
Sbjct: 137 NLKSLEEAVELCNQIGYPVMLKASMGGGGKGMRLIHRADEVEEAYTTAKSESLSSFGDDT 196

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E++V+    +   ++GD   +V  +   +        K             +  ++ 
Sbjct: 197 VYLEKFVEEPHHIEFQILGDKYGNVIHLCERECSVQRRNQKI----VEESPSVFVTPELR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +++   A  A +A+   G    +FL D   R  ++LE+N 
Sbjct: 253 RDMGEKAVAAAKAVNYVGAGTIEFLVDKH-RNYYFLEMNT 291


>gi|209964254|ref|YP_002297169.1| acetyl-CoA carboxylase, biotin carboxylase [Rhodospirillum centenum
           SW]
 gi|209957720|gb|ACI98356.1| acetyl-CoA carboxylase, biotin carboxylase [Rhodospirillum centenum
           SW]
          Length = 452

 Score = 65.9 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 41/221 (18%), Positives = 83/221 (37%), Gaps = 20/221 (9%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H   G   E+     ++      +         +  DK+ +K+ V   G+P  P    
Sbjct: 82  AIHPGIGFMAENAQFAEMVIEHGFTWIGPTPEHIRIMGDKVTAKKTVIDLGLPCVPGSDG 141

Query: 112 LVNRFTMDS--QHLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGDQ 165
            V  F   S     I  P +IK   GG   G+ V      +     L   ++ +    DQ
Sbjct: 142 PVRDFEDASAVAEQIGYPILIKAAAGGGGKGMKVAWNRDQLREAYQLARGEARAAFGNDQ 201

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           + IE+Y+ +   +   ++GD    V              ++          P+  + ++ 
Sbjct: 202 VYIEKYLANPRHIEIQLLGDNYGTVV-----HFGERDCSVQRRHQKVIEEAPSPALTVEQ 256

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +  LA    Q++G RG+   +FL+   + + +++E+N 
Sbjct: 257 REWIGALAARTAQSLGYRGVGTMEFLY--ENGQFYFIEMNT 295


>gi|168335071|ref|ZP_02693182.1| carbamoyl phosphate synthase large subunit [Epulopiscium sp. 'N.t.
           morphotype B']
          Length = 1075

 Score = 65.9 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 34/273 (12%), Positives = 86/273 (31%), Gaps = 37/273 (13%)

Query: 18  SGKACASALEDAGFKVSQID---------------------VDRSVGLVLAHLKPDLAFN 56
           S  A   AL+  G++   I+                      D  V  +    KP     
Sbjct: 583 SVHAIM-ALKKCGYETIIINNNPETVSTDFNTSDKLYFEPLTDEDVYHIFLKEKPKGVIL 641

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116
              G       +    E + IP   +       + D+ +  +V+    +       +   
Sbjct: 642 QFGGQTA--IKLANFCEKMNIPVLGTQPRQVDEAEDREKFDEVLEKLHIKRPKGKAIWNV 699

Query: 117 T--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
              +     +  P +++P       G+ +  ++  +   L  +   +  + +LI++Y+ G
Sbjct: 700 AEGLAVASELDYPVLVRPSYVLGGQGMEITFEETELQRYLENAFDRDKENPVLIDRYLMG 759

Query: 175 IELTCGVMGDAS---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
            E+    + D     +      + ++  +S        ++T      I   I +++    
Sbjct: 760 REIEVDAICDGEDILIPGIMEHLERAGIHS------GDSTTMYPSVNISAAIKEKIISCT 813

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            L    +   G+    ++       ++ +E+N 
Sbjct: 814 KLLATELKVLGMINIQYI--DYKDDLYIIEVNP 844



 Score = 56.3 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 53/287 (18%), Positives = 103/287 (35%), Gaps = 35/287 (12%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQID-------VDRSVGLVLAHLKPDLAFN--- 56
           G ++E + S   G     A+ + G +V  ++        D+ V   +     + AF    
Sbjct: 21  GQAAEFDYS---GTQACQAIREEGIEVILVNSNPATIMTDKEVADKIYIEPLNAAFIEKV 77

Query: 57  --------VLHGNFGEDGLV-------QAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
                   +L G  G+ GL          ILE   +    + I A     D+   +++++
Sbjct: 78  IAKERPDSLLAGVGGQTGLNLAVELXDLGILEKYNVRVIGTQISAIKEGEDRESFRKLMN 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
               PV  S  V      +     I  P V++P       G  + + ++ +         
Sbjct: 138 RINQPVIESKTVETVADAITFAREIGYPVVVRPAYTLGGTGGGIAETEEELSEIASSGIH 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +  +Q+LIE+ + G  E+   VM D    V  +   ++      +   + +S  V P++
Sbjct: 198 LSRVNQVLIEKCIKGWKEIEYEVMRDNYGTVITVCNMEN---IDPVGIHTGDSIVVAPSQ 254

Query: 219 -IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +    Y+ ++R +         RG         P S +   +EIN 
Sbjct: 255 TLSDKEYQMLRRASLDIISECDIRGGCNVQIALHPDSFEYAIIEINP 301


>gi|156099654|ref|XP_001615692.1| biotin carboxylase subunit of acetyl CoA carboxylase [Plasmodium
           vivax SaI-1]
 gi|148804566|gb|EDL45965.1| biotin carboxylase subunit of acetyl CoA carboxylase, putative
           [Plasmodium vivax]
          Length = 3061

 Score = 65.9 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 58/336 (17%), Positives = 117/336 (34%), Gaps = 59/336 (17%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS---------VGLVLAHLKP 51
           + VL     +E ++S S+ K  + A      KV ++   ++         +  V    + 
Sbjct: 484 IIVLA----TEEDIS-SNAKYISLA-----NKVIKVPPGKNCNNYANVPLIVEVAKKEQV 533

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS- 110
           D  +    G+  E+ L+  +LE   I +            DK+ +  +  S  VPV    
Sbjct: 534 DAVWPG-WGHCSENPLLPTMLERENIIFIGPTGDVMEALGDKISANILAQSVNVPVVKWS 592

Query: 111 ---ILVNRFT-------------------MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQ 148
              I ++ F                    +     I  P +IK  +GG   GI  ++ + 
Sbjct: 593 GDSIRIDNFDSKIGEDVYNKSTIHSLDACIKECQRIGYPVMIKASQGGGGKGIRKVENEA 652

Query: 149 SIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYS 207
            I     Q         + + +       +   V+GD   +V  ++           K  
Sbjct: 653 EIKKAYEQVQMELPNSPIFLMKVCSNVRHIEIQVVGDMYGNVCSLSGRDCTTQRRFQKIF 712

Query: 208 SLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV--- 264
                   P+ +P DI++E+++ +    + I  RG    ++L+D   +  F+LE+N    
Sbjct: 713 EEG----PPSVVPPDIFREMEKASIRLTKMIKYRGAGTIEYLYDQEKQTYFFLELNPRLQ 768

Query: 265 --QP---GMTPVSIFPEMAA-YAGYSFREL--LLWM 292
              P   G+T  ++         G   + +  +  +
Sbjct: 769 VEHPVSEGITDTNLISIQLQVAMGVPLQNIDDIRRL 804


>gi|148272171|ref|YP_001221732.1| acetyl/propionyl CoA carboxylase subunit [Clavibacter michiganensis
           subsp. michiganensis NCPPB 382]
 gi|147830101|emb|CAN01030.1| acetyl/propionyl CoA carboxylase subunit [Clavibacter michiganensis
           subsp. michiganensis NCPPB 382]
          Length = 589

 Score = 65.9 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 31/199 (15%), Positives = 66/199 (33%), Gaps = 14/199 (7%)

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN----RFTMDSQHLISPPYVI 130
             + +      A     DK  ++ V    G P+ P  L         +D   +   P  I
Sbjct: 100 AGLTWIGPSPSAIQQLGDKTTARHVAERVGAPLAPGTLNPVSGADEVLDFVDVHGLPVAI 159

Query: 131 KPLKGGSSLGIIVIKKDQSIPL----DLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDA 185
           K   GG   G+ V +  + +P        ++ +     +  +E+Y+D    +    + D+
Sbjct: 160 KAAFGGGGRGLKVARTREEVPELFESATREAVAAFGRGECFVEKYLDRPRHVETQCLADS 219

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
           + +V  I+           K             +  +   ++   +    + +G  G   
Sbjct: 220 AGNVVVISTRDCSLQRRHQK----LVEEAPAPFLTDEQNAQLYAASKAILREVGYVGAGT 275

Query: 246 SDFLFDPLSRKVFWLEINV 264
            +FL       + +LE+N 
Sbjct: 276 CEFLV-AQDGTISFLEVNT 293


>gi|90418034|ref|ZP_01225946.1| carbamoyl-phosphate synthase large chain [Aurantimonas
           manganoxydans SI85-9A1]
 gi|90337706|gb|EAS51357.1| carbamoyl-phosphate synthase large chain [Aurantimonas
           manganoxydans SI85-9A1]
          Length = 1143

 Score = 65.9 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 51/267 (19%), Positives = 94/267 (35%), Gaps = 33/267 (12%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVL---------HGNFGEDG 66
           AL+DAG++   I         D D S  L    L  +    VL         HG   + G
Sbjct: 648 ALQDAGYEAIMINCNPETVSTDYDTSDRLYFEPLTAEDVLEVLKAEQTAGRLHGVIVQFG 707

Query: 67  -----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--D 119
                 +   LE   IP   +   A  L+ D+ R +++++  G+    + +        D
Sbjct: 708 GQTPLKLAEALEKAGIPILGTSPDAIDLAEDRDRFQRLLNELGLRQPRNGIARSVDEARD 767

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELT 178
               I  P V++P        + +++ +      +  +   +    +LI+ Y+ D IE+ 
Sbjct: 768 IVARIGYPVVVRPSYVLGGRAMEIVRNEAQFERYMHTAVVVSGKSPVLIDSYLSDAIEVD 827

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQA 237
              + D +       +   +    E    S +S   LP   +   +  E+ R       A
Sbjct: 828 VDCLSDGTATYVAGIMEHIE----EAGIHSGDSACSLPVHSLSTAMTDELVRQTREMALA 883

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINV 264
           +   G+    F        V+ LE+N 
Sbjct: 884 LKVGGLMNVQFAI--KDDVVYVLEVNP 908



 Score = 41.6 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 49/332 (14%), Positives = 100/332 (30%), Gaps = 89/332 (26%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL+  G+++  +         D D              V  ++A  +PD    
Sbjct: 29  SGTQACKALKAEGYRIILVNSNPATIMTDPDLAHATYIEPITPEVVAKIIAKERPDALLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      +LE   +    +   A   + D+   ++ ++  G+    S+L
Sbjct: 89  TMGGQTALNTALSLRRMGVLEKYGVEMIGADADAIDKAEDRALFREAMAKIGLETPRSLL 148

Query: 113 VNRFT--------------------------------MDSQHLISPP------------- 127
            N                                   ++ + LI  P             
Sbjct: 149 ANATDAKSADRKVHDTRRAEIIATITDEAEQDAALAALEHEWLIGEPDRKQRYMTRALAA 208

Query: 128 -----------YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-I 175
                       +I+P       G  +          +      +   ++LIE+ V G  
Sbjct: 209 AAEALEDVGLPAIIRPSFTLGGTGGGIAYNRSEFFEIVEGGLDASPTTEVLIEESVLGWK 268

Query: 176 ELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFL 233
           E    V+ D + + +   ++   D           +S  V PA  +    Y+ ++  +  
Sbjct: 269 EYEMEVVRDKADNCIIVCSIENIDPMGVHT----GDSITVAPALTLTDKEYQIMRNASIA 324

Query: 234 AHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
             + IG   G S   F  DP + ++  +E+N 
Sbjct: 325 VLREIGVETGGSNVQFAVDPQTGRLVVIEMNP 356


>gi|298290464|ref|YP_003692403.1| carbamoyl-phosphate synthase L chain ATP-binding protein [Starkeya
           novella DSM 506]
 gi|296926975|gb|ADH87784.1| Carbamoyl-phosphate synthase L chain ATP-binding protein [Starkeya
           novella DSM 506]
          Length = 675

 Score = 65.9 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 69/220 (31%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H  +G   E       L    I +      A     DK+ SK+  ++  V   P  L 
Sbjct: 77  AVHPGYGFLSERAAFPEALAAEGIVFIGPNPRAIEAMGDKIESKKAAAAAKVSTVPGYLG 136

Query: 113 ---VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSWNHGDQ 165
                   M     I  P +IK   GG   G+ +      +         ++ S    D+
Sbjct: 137 VIEDAEHAMRIADEIGYPVMIKASAGGGGKGMRIANSRAEVQDGFDRARSEAKSSFGDDR 196

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+++     +   V+GD   +V  +   +        K             +     
Sbjct: 197 VFVEKFIVQPRHIEIQVLGDKHGNVIHLGERECSIQRRNQK----VVEEAPSPLLDEATR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K +   A    +A+        +F      +  ++LE+N 
Sbjct: 253 KRMGEQAVALAKAVNYDSAGTVEF-VAGQDKSFYFLEMNT 291


>gi|296169725|ref|ZP_06851342.1| acetyl-/propionyl-coenzyme A carboxylase alpha chain, AccA2
           [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295895622|gb|EFG75319.1| acetyl-/propionyl-coenzyme A carboxylase alpha chain, AccA2
           [Mycobacterium parascrofulaceum ATCC BAA-614]
          Length = 719

 Score = 65.9 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 42/214 (19%), Positives = 82/214 (38%), Gaps = 19/214 (8%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
           +G   E+    A ++   + +    + A      K+ SK+++S+ GVPV     ++    
Sbjct: 79  YGFLSENADFAAAVQGAGLTWIGPPVDAVRAMGSKIESKKLMSAAGVPV-----LDELDP 133

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKK----DQSIPLDLLQSSSWNHGDQLLIEQYV-D 173
           D+      P ++K   GG   G+ V+++       +     ++ S      +  E+Y+  
Sbjct: 134 DTVAQAQLPVLVKASAGGGGRGMRVVRELSSLAGEVEAARREAQSAFGDPTVFCERYLPT 193

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI---YKEVQRL 230
           G  +   VM D    V  +   +        K          P+ +   +     ++   
Sbjct: 194 GHHIEVQVMADTHGTVWAVGERECSIQRRHQK-----IIEEAPSPLVERVPGMRAKLFDA 248

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           A LA  AIG  G    +FL D    + ++LE+N 
Sbjct: 249 ARLAAGAIGYTGAGTVEFLAD-DDGEFYFLEMNT 281


>gi|282162687|ref|YP_003355072.1| hypothetical protein MCP_0017 [Methanocella paludicola SANAE]
 gi|282155001|dbj|BAI60089.1| conserved hypothetical protein [Methanocella paludicola SANAE]
          Length = 303

 Score = 65.9 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 34/223 (15%), Positives = 74/223 (33%), Gaps = 18/223 (8%)

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ-----HLISPPYVIKPLKGGS 137
              +  +   K+    +    G+P   S+L      +         +  P V+K      
Sbjct: 81  DPHSIRVCSSKVVLDDLFRQNGIPSPKSLLFAGDFGEENLRHVFEYLGFPLVLKAPYTKF 140

Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKS 197
           S  +          L +      N    +L E    G +   G++ +  L + +  +P+ 
Sbjct: 141 SSHVEKAHDGAEFRL-IAARYLKNATPIVLQEYMPSGFDWRVGMLDNKILYLCKYYMPRG 199

Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
            +    L         V+P  +  +  K+++ LA    + +G       D     +  + 
Sbjct: 200 GWKVRSLVDGKNQWGRVVPI-LRKNAPKKLEELAVNVSKCVGDGLYG-LD--VKEIDGRF 255

Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           F +EIN  P     S + ++    G    +L   +++  +  R
Sbjct: 256 FCIEINDNP-----SFYADL--EDGKD-PDLYEKIIDRLTSGR 290


>gi|227512929|ref|ZP_03942978.1| acetyl-CoA carboxylase [Lactobacillus buchneri ATCC 11577]
 gi|227083929|gb|EEI19241.1| acetyl-CoA carboxylase [Lactobacillus buchneri ATCC 11577]
          Length = 470

 Score = 65.9 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 77/221 (34%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     + E   I +        +L  DK  +++ + S GVPV P    
Sbjct: 88  AIHPGYGFLSENAEFAELCESCHIKFIGPSHKLISLMGDKANAREAMKSAGVPVIPGSEG 147

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGDQ 165
            +            I  P ++K   GG   GI  + +   +         ++ +  + D 
Sbjct: 148 DVTSIDQAEKIAEKIGFPVLLKSAAGGGGKGIREVDRPDQLRDAFEQAQREAKASFNDDS 207

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDI 223
           + +E+ +     +   V+ D   +V  +           L+ +        P  +     
Sbjct: 208 MYVEKLIRNAKHVEMQVIADDFGNVVYLPE-----RDCSLQRNHQKVIEESPCVLISPAE 262

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            K++  +   A   +G       +FL D  +   +++E+N 
Sbjct: 263 RKKLGEIVAHATLKLGYTNTGTYEFLMDE-THHFYFMEMNT 302


>gi|111220670|ref|YP_711464.1| biotin carboxylase; biotin carboxyl carrier protein (bifunctional
           protein) [Frankia alni ACN14a]
 gi|111148202|emb|CAJ59871.1| biotin carboxylase; biotin carboxyl carrier protein (bifunctional
           protein) [Frankia alni ACN14a]
          Length = 586

 Score = 65.9 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 74/220 (33%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      +    + +      A     DK  ++ +  + G P+ P    
Sbjct: 76  AVHPGYGFLSENADFAEAVIGAGLTWIGPPPEAIRRLGDKTAARHIALAVGAPLAPGTAD 135

Query: 114 NRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL----DLLQSSSWNHGDQ 165
               +D           P  IK   GG   G+ V    + +P      + ++ +     +
Sbjct: 136 PVAGVDEVVAFAEQYGLPVAIKAAFGGGGRGLKVAWTAEELPELFDSAVREAVAAFGRGE 195

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             +E+Y+D    +   V+ D+  +V  +        S + +Y  L         +  +  
Sbjct: 196 CFVERYLDQPRHVETQVLADSHGNVVVVGTRD---CSLQRRYQKL-VEEAPAPFLSAEQL 251

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            E+   +    +  G  G    +FL       + +LE+N 
Sbjct: 252 TELYEASKAICKKAGYVGAGTVEFLV-ARDGMISFLEVNT 290


>gi|186476841|ref|YP_001858311.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia
           phymatum STM815]
 gi|184193300|gb|ACC71265.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia
           phymatum STM815]
          Length = 404

 Score = 65.9 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 40/274 (14%), Positives = 93/274 (33%), Gaps = 32/274 (11%)

Query: 19  GKACASALEDAGFKVSQID----------------VD----RSVGLVLAHLKPDLAFNVL 58
           GK    AL+  G +V  +D                +D    +++  ++   +P L    +
Sbjct: 27  GKEVIIALQRLGVEVIAVDRYPNAPGHQVAHRAHVIDMTDAKALRALVEEEQPHLIVPEI 86

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKM-RSKQVVSSCGVPVCPSILVNRFT 117
                 D L  A +E   +        A+ L+M++    +      G+P  P    +   
Sbjct: 87  EAI-ATDAL--AAIETEGVAEVIPTARATQLTMNREGIRRLAAEELGLPTSPYAFADSVE 143

Query: 118 MDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH--GDQLLIEQYVD 173
                   +  P V+KP+   S  G  V++ D  I      + +       ++++E +++
Sbjct: 144 ELKAGIAKVGYPCVVKPVMSSSGKGQSVLRSDADIEPAWQYAMAGGRVNHGRVIVEGFIN 203

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAF 232
             E     +   +++                   + +      P  +     ++ + +A 
Sbjct: 204 -FEYEITQLTVRAIEPATQQTATYFCDPIGHVQVAGDYVESWQPQPMSPRALEQSRDIAD 262

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
               A+G RG+   +         V++ E++ +P
Sbjct: 263 KVTTALGGRGLFGVELFVR--GDDVWFSEVSPRP 294


>gi|331697311|ref|YP_004333550.1| carbamoyl-phosphate synthase large subunit [Pseudonocardia
           dioxanivorans CB1190]
 gi|326952000|gb|AEA25697.1| carbamoyl-phosphate synthase, large subunit [Pseudonocardia
           dioxanivorans CB1190]
          Length = 1099

 Score = 65.9 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 50/281 (17%), Positives = 102/281 (36%), Gaps = 36/281 (12%)

Query: 11  EREVSLSSGKACASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGN 61
           E + S     A   AL DAGF+   I         D D +  L    L  +    V+H  
Sbjct: 573 EFDYSCV--HAVM-ALRDAGFETVMINCNPETVSTDYDTADRLYFEPLTFEDVLEVVHAE 629

Query: 62  FGEDGLVQAI---------------LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP 106
               G V  +               L    +P   +   A  L+ ++    +V+   G+P
Sbjct: 630 QA-SGTVAGVIVQLGGQTPLGLAQRLTAAGVPVVGTPADAIDLAENRGEFGEVLRRAGLP 688

Query: 107 VCPSILVNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164
                    F    D    I  P +++P       G+ ++  ++++   + +++  +   
Sbjct: 689 APAFGTATSFEQARDIATRIGYPVLVRPSYVLGGRGMEIVYDEETLAGYIARATEISPTR 748

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK-YSSLNSTHVLPAKIPLDI 223
            +L+++++D       +  DA  D TE+ +     +  E   +S  +S  + P  +   +
Sbjct: 749 PVLVDRFLD---DAVEIDVDALFDGTELYLGGVMEHIEEAGVHSGDSSCTLPPITLGRSV 805

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + V+R      + +G RG+    +        ++ LE N 
Sbjct: 806 LETVRRSTEAIARGVGVRGLLNVQYALH--GDTLYVLEANP 844



 Score = 59.8 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 54/278 (19%), Positives = 100/278 (35%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG      L   G +VS +         D +              V LV+A  +PD    
Sbjct: 29  SGTQACRVLRSEGLRVSLVNSNPATIMTDPEIADATYVEPITPEFVELVIAAERPDALLA 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G    +  +      +LE   +    + + A     D+++ K++V S G  V  S +
Sbjct: 89  TLGGQTALNTAIALHDNGVLERYGVELIGADVEAIQRGEDRLKFKEIVQSVGGDVPRSAV 148

Query: 113 VNRFTMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +        +  +  P VI+P      LG  +    + +        + +   ++LIE+
Sbjct: 149 CHSMDEVRAAVAELGLPVVIRPSFTMGGLGSGMAHTPEDLDRLAGAGLAASPVTEVLIEE 208

Query: 171 YVDG-IELTCGVMGDASL-DVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            V G  E    +M D +   V   ++   D           +S  V PA  +    Y+ +
Sbjct: 209 SVLGWKEYELELMRDHADNVVVVCSIENLDPMGVHT----GDSITVAPAMTLTDREYQTM 264

Query: 228 QRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
           + +     +A+G   G     F  DP + ++  +E+N 
Sbjct: 265 RDVGIAVLRAVGVDTGGCNIQFAVDPRTGRLVVIEMNP 302


>gi|313904758|ref|ZP_07838131.1| carbamoyl-phosphate synthase, large subunit [Eubacterium
           cellulosolvens 6]
 gi|313470361|gb|EFR65690.1| carbamoyl-phosphate synthase, large subunit [Eubacterium
           cellulosolvens 6]
          Length = 1077

 Score = 65.9 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 46/276 (16%), Positives = 102/276 (36%), Gaps = 32/276 (11%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL   G+++  +              D+          +  ++A  +PD    
Sbjct: 29  SGTQACKALRSLGYEIVLVNSNPATIMTDPEMADITYIEPLNVNRLEEIIAKERPDALLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G  G +   +     +L+   +      + A     D++  K+ ++   + +  S  
Sbjct: 89  NLGGQSGLNLCSELYKAGVLDKYSVQVIGVQVDAIERGEDRIEFKETMNKLHIDMPRSHE 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     +  P V++P       G  ++   + +     +    +  +Q+LIE+
Sbjct: 149 AYSVEEAVKYADKLGYPVVVRPAYTMGGAGGGLVYNREELQTVASRGLQASLINQVLIEE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQ 228
            + G  EL   V+ D   ++  +   ++      +   + +S  V P   I  ++  ++Q
Sbjct: 209 SILGWEELELEVVRDKDNNMITVCFIENVD---PVGVHTGDSFCVAPMLTISEELQAKLQ 265

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             A+   + IG  G +   F  DP++ +V  +EIN 
Sbjct: 266 EQAYRIVEHIGVIGGTNVQFAHDPVTDRVVVIEINP 301



 Score = 62.1 bits (150), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 33/220 (15%), Positives = 87/220 (39%), Gaps = 14/220 (6%)

Query: 68  VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTMDSQHLIS 125
           + A L+   +    +      L+ D+   + ++   G+P+  +   +     +++ H I 
Sbjct: 644 LAASLKKNGVKILGTTPEVIDLAEDRDHFRAMMDKLGIPMPEAGMAVSVEEAIETAHKIG 703

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGD 184
            P +++P       G+ V+  D+S+   +  +        +LI+++++  +E     + D
Sbjct: 704 YPVMVRPSFVLGGRGMEVVYDDESMADYMKAAIGVTPDRPILIDRFLNHAMECEADAIAD 763

Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGI 243
            +       +   +           +S  ++P+K IP +  + ++       + +   G+
Sbjct: 764 GTHAFVPAVMEHIELAGIHS----GDSACIIPSKHIPEENLETIREYTRKIAEEMHVVGL 819

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283
              +  +   + KVF +E N +   T     P ++  AG 
Sbjct: 820 --MNMQYAIENGKVFVIEANPRASRT----VPLVSKVAGI 853


>gi|304388391|ref|ZP_07370501.1| carbamoyl-phosphate synthase, large subunit [Neisseria meningitidis
           ATCC 13091]
 gi|304337623|gb|EFM03782.1| carbamoyl-phosphate synthase, large subunit [Neisseria meningitidis
           ATCC 13091]
          Length = 1071

 Score = 65.9 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 50/278 (17%), Positives = 101/278 (36%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +              DV        ++V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYKVILVNSNPATIMTDPEMADVTYIEPIMWQTVEKIIAKERPDAILP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      +L    +    +   A   + D+ R K+ +   G+    S +
Sbjct: 89  TMGGQTALNCALDLARNGVLAKYNVELIGATEDAIDKAEDRGRFKEAMEKIGLSCPKSFV 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     + +Q  +  P +I+P       G  +            +    +   +LLIEQ
Sbjct: 149 CHTMNEALAAQEQVGFPTLIRPSFTMGGSGGGIAYNKDEFLAICERGFDASPTHELLIEQ 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            V G  E    V+ D + +   I   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SVLGWKEYEMEVVRDKNDNCIIICSIEN----FDPMGVHTGDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RNASLAVLREIGVDTGGSNVQFAMNPENGEMIVIEMNP 302



 Score = 65.5 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 28/192 (14%), Positives = 73/192 (38%), Gaps = 8/192 (4%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYVIKPL 133
            +    +   +   + D+ R ++V++  G+   P+ + +           I  P V++P 
Sbjct: 652 GVNIIGTSADSIDAAEDRERFQKVLNDLGLRQPPNRIAHNEEEALVRAEEIGYPLVVRPS 711

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEI 192
                  + ++   +++   + ++   +    +L++ ++ + IE+    + D    V   
Sbjct: 712 YVLGGRAMQIVHSAEALQKYMREAVQVSEDSPVLLDFFLNNAIEVDVDCVSDCKDVVIGG 771

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            +   +       +S  +   + P  +  +I  E++R       A+G  G+    F    
Sbjct: 772 IMQHVEQAGI---HSGDSGCSLPPYSLSEEIQDEIRRQTKAMAYALGVVGLMNVQFAV-- 826

Query: 253 LSRKVFWLEINV 264
               VF LE+N 
Sbjct: 827 QDGVVFVLEVNP 838


>gi|307252744|ref|ZP_07534635.1| Phosphoribosylglycinamide formyltransferase 2 [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306859776|gb|EFM91798.1| Phosphoribosylglycinamide formyltransferase 2 [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
          Length = 400

 Score = 65.9 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 55/310 (17%), Positives = 102/310 (32%), Gaps = 58/310 (18%)

Query: 19  GKACASALEDAGFKVSQID--------------------VDRSVGLVLAHLKPDLAFNVL 58
           GK     L+  G +V  +D                       ++  ++   KPD     +
Sbjct: 31  GKEVVIELQRLGVEVIAVDRYENAPAQQVAHRAYTISMLDGAALRALVEKEKPDFIVPEV 90

Query: 59  HGNFGEDGLVQAILELLEIPY-THSGILASALSMDKM-RSKQVVSSCGVPVCPSILVNRF 116
                E      ++EL +  Y       A+ L+M++    +      G+   P   V+  
Sbjct: 91  -----EAIATATLVELEQEGYNVVPTAKATQLTMNREGIRRLAAEELGLKTSPYRFVDNL 145

Query: 117 TMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLD--LLQSSSWNHGDQLLIEQYV 172
               Q +  I  P V+KP+   S  G  VIK +  I       Q      G ++++E ++
Sbjct: 146 EDFKQAVAEIGIPCVVKPIMSSSGHGQSVIKSEDQIQQAWDYSQEGGRAGGGRVIVEGFI 205

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYEL----KYSSLNSTHVL-PAKIPLDIYKEV 227
                          ++T++ V   +  S+      +    +      P  +     K  
Sbjct: 206 K-----------FDYEITQLTVRHVNGTSFLAPIGHRQEDGDYRESWQPQAMSDLALKRA 254

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP---GMT-----PVSIFPEMAA 279
           Q  A     A+G RGI   +        ++ + E++ +P   GM       +S F   A 
Sbjct: 255 QETAERITTALGGRGIFGVELFV--CGDEIIFNEVSPRPHDTGMVTMASQELSQFALHAR 312

Query: 280 YA-GYSFREL 288
              G    E+
Sbjct: 313 AILGLPISEI 322


>gi|323526829|ref|YP_004228982.1| carbamoyl-phosphate synthase large subunit [Burkholderia sp.
           CCGE1001]
 gi|323383831|gb|ADX55922.1| carbamoyl-phosphate synthase, large subunit [Burkholderia sp.
           CCGE1001]
          Length = 1084

 Score = 65.9 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 26/203 (12%), Positives = 73/203 (35%), Gaps = 13/203 (6%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQHLISPPYV 129
           LE   +P   +       + D+ R ++++   G+   P+         +     I  P V
Sbjct: 655 LEANGVPIIGTSPDMIDAAEDRERFQKLLQDLGLRQPPNRTARAEDEALKLADEIGYPLV 714

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++ + + +   + ++   ++   +L+++++ D IE     + D    
Sbjct: 715 VRPSYVLGGRAMEIVHEPRDLERYMREAVKVSNDSPVLLDRFLNDAIECDVDCISDGDAV 774

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                +   +       +S  ++  + P  +  +   E++R      +A+   G+    F
Sbjct: 775 FIGGVMEHIEQAGV---HSGDSACSLPPYSLSKETVAELKRQTGAMAKALNVVGLMNVQF 831

Query: 249 LFD-------PLSRKVFWLEINV 264
                          ++ LE+N 
Sbjct: 832 AIQQVPQADGSKEDIIYVLEVNP 854



 Score = 62.4 bits (151), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 48/285 (16%), Positives = 96/285 (33%), Gaps = 42/285 (14%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +              DV          V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYKVILVNSNPATIMTDPNTADVTYIEPITWEVVERIIAKERPDAILP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G    +  +      +L+  ++    +   A   + D+ + K  ++  G+    S  
Sbjct: 89  TMGGQTALNCALDLHAHGVLDKYKVELIGASPEAIDKAEDRQKFKDAMTKIGLGSAKSGT 148

Query: 111 -------ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
                  + V+            P VI+P       G  +    +       +    +  
Sbjct: 149 AHSMEEALQVHARIAAETGSGGYPVVIRPSFTLGGSGGGIAYNREEFEEICKRGLDLSPT 208

Query: 164 DQLLIEQYVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IP 220
            +LLIE+ + G  E    V+ D   + +   ++   D           +S  V PA+ + 
Sbjct: 209 RELLIEESLLGWKEYEMEVVRDKKDNCIIVCSIENLDPMGIHT----GDSITVAPAQTLT 264

Query: 221 LDIYKEVQRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
              Y+ ++  +    + IG   G S   F  +P   ++  +E+N 
Sbjct: 265 DKEYQVLRNASLAVLREIGVDTGGSNVQFSINPKDGRMIVIEMNP 309


>gi|126664879|ref|ZP_01735863.1| carbamoyl-phosphate synthase large subunit [Marinobacter sp. ELB17]
 gi|126631205|gb|EBA01819.1| carbamoyl-phosphate synthase large subunit [Marinobacter sp. ELB17]
          Length = 1072

 Score = 65.9 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 40/291 (13%), Positives = 103/291 (35%), Gaps = 33/291 (11%)

Query: 22  CASAL--EDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH-----GNFGED 65
             +AL   + G++   I         D D S  L    +  +    ++H     G   + 
Sbjct: 583 VHAALAMREDGYETIMINCNPETVSTDYDTSDRLYFEPITLEDVLEIIHVEKPKGVIVQY 642

Query: 66  G-----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118
           G      +   LE   +P   +   A   + D+ R +++++  G+    +  V       
Sbjct: 643 GGQTPLKLARGLEAAGVPIIGTSPDAIDCAEDRERFQKLIAGLGLKQPENATVRSHEEGV 702

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIEL 177
            +   I  P V++P        + ++  +  +   +  +   ++   +L++ +++  IE+
Sbjct: 703 IAARKIGYPLVVRPSYVLGGRAMEIVYGEDELERYMRSAVLVSNDSPVLLDHFLNAAIEV 762

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
               + D    V    +   +       +S  ++  + P  +P D+   ++        A
Sbjct: 763 DIDAICDGKDVVIGGIMQHIEQAGI---HSGDSACSLPPYSLPADVQNAMRDAVKQMALA 819

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           +   G+   +         ++ +E+N +   T     P ++   G S  ++
Sbjct: 820 LKVVGL--MNVQLAWQDGDIYVIEVNPRASRT----VPFVSKAIGVSLAKV 864



 Score = 57.4 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/278 (14%), Positives = 95/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                      +V  ++   KPD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPAMADATYIEPIIWSTVAKIIEKEKPDALLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      +L    +    +       + D+ R  + + S G+    + +
Sbjct: 89  TMGGQTALNCALDLEKHGVLAKYGVEMIGANADTIDKAEDRSRFDKAMKSIGLECPRADI 148

Query: 113 VNRFTMD--SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +           +  P +I+P       G  +           ++    +   +LLI++
Sbjct: 149 AHNLEEAHRIADNVGFPCIIRPSFTMGGSGGGIAYNRGEFEEICIRGLDLSPTSELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + +   +   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCAIEN----FDAMGVHTGDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F   P + ++  +E+N 
Sbjct: 265 RNASLAVLREIGVETGGSNVQFGIHPDTGRMVVIEMNP 302


>gi|319427768|gb|ADV55842.1| alpha-L-glutamate ligase, RimK family [Shewanella putrefaciens 200]
          Length = 301

 Score = 65.9 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 59/304 (19%), Positives = 117/304 (38%), Gaps = 41/304 (13%)

Query: 16  LSSGKACASALEDAGFKVSQID----------VDRSVGLVLAHL-KPDLAFNVLHGNFGE 64
           L S +   +A E  G +   I+          +  S+      L   D     +H +   
Sbjct: 12  LYSMQRLVAACESRGHEAVVINTLNCYMNINSIKPSIHYEGQELVGFDAIIPRIHASVTF 71

Query: 65  DGL-VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            G  V    E++ + +  +  ++ A S DK+R+ Q++S  G+ +  +   N+   D   L
Sbjct: 72  YGCAVVRQFEMMGV-FVANDSISIARSRDKLRALQLLSRKGIGMPITGFANKPN-DIPDL 129

Query: 124 I----SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD---GIE 176
           I      P VIK L+G   +G+++ +   +     +  +       +L+++Y+    G +
Sbjct: 130 INMVGGAPLVIKLLEGTQGIGVVLAETKTAAES--VIEAFLGLKANILVQEYIKESNGSD 187

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           + C V+GD  +   +   P+ DF S         +  +   +         +++A  A +
Sbjct: 188 IRCFVVGDKVVASMKRQGPEGDFRSNLHLGGCGETVKITSVE---------RKMAIAAVK 238

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           A+G       D      +R    LE+N  PG+  +          G S  E ++  +E  
Sbjct: 239 AMGLVVAG-VD--ILRSNRGPLILEVNSAPGIEGI------EQTTGISVTEPIVEYIEKM 289

Query: 297 SCLR 300
              R
Sbjct: 290 VAAR 293


>gi|121594731|ref|YP_986627.1| carbamoyl-phosphate synthase large subunit [Acidovorax sp. JS42]
 gi|120606811|gb|ABM42551.1| carbamoyl-phosphate synthase large subunit [Acidovorax sp. JS42]
          Length = 1053

 Score = 65.9 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 23/206 (11%), Positives = 71/206 (34%), Gaps = 23/206 (11%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--FTMDSQHLISPPYV 129
           LE   +P   +       + D+ R ++++   G+   P+         ++    +  P V
Sbjct: 625 LEAAGVPIIGTTPDMIDAAEDRERFQKLLGDLGLRQPPNATARTEPEALEKAAALGYPLV 684

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG---------IELTCG 180
           ++P        + ++ + + +   + ++   ++   +L+++++            + +  
Sbjct: 685 VRPSYVLGGRAMEIVHEQRDLERYMREAVKVSNDSPVLLDRFLSNAIECDVDCVRDASGA 744

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V     ++  E A   S            ++  + P  +  +   E++R        +  
Sbjct: 745 VFIGGVMEHIEQAGVHSG----------DSACSLPPYYLKAETVAEIKRQTTAMAHGLNV 794

Query: 241 RGISRSDFLFDPLSRK--VFWLEINV 264
            G+    F          ++ LE+N 
Sbjct: 795 VGLMNVQFAIQETDDGDVIYVLEVNP 820



 Score = 59.4 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 47/273 (17%), Positives = 99/273 (36%), Gaps = 35/273 (12%)

Query: 23  ASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFNVLHGN 61
             AL + G+KV  I              DV        ++V  ++A  +PD     + G 
Sbjct: 4   CKALREEGYKVILINSNPATIMTDPATADVTYIEPITWQTVEKIIAKERPDAILPTMGGQ 63

Query: 62  FGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117
              +  +      +L   ++    +   A   + D+++ K  ++  G+    S + +   
Sbjct: 64  TALNCALDLWRNGVLHKYKVELIGATPEAIDKAEDRLKFKDAMTRIGLGSARSGIAHSMD 123

Query: 118 --MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG- 174
                Q  +  P VI+P       G  +    +       +    +  ++LLIE+ + G 
Sbjct: 124 EAWAVQKNVGFPTVIRPSFTLGGTGGGIAYNPEEFETICKRGLEASPTNELLIEESLLGW 183

Query: 175 IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAF 232
            E    V+ D + + +   ++   D           +S  V PA+ +    Y+ ++  + 
Sbjct: 184 KEYEMEVVRDKADNCIIVCSIENLDPMGVHT----GDSITVAPAQTLTDKEYQIMRNASL 239

Query: 233 LAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
              + IG   G S   F  +P   ++  +E+N 
Sbjct: 240 AVLREIGVDTGGSNVQFSVNPKDGRMIVIEMNP 272


>gi|14590236|ref|NP_142302.1| phosphoribosylglycinamide formyltransferase 2 [Pyrococcus
           horikoshii OT3]
 gi|88192722|pdb|2CZG|A Chain A, Crystal Structure Of Probable Phosphoribosylglycinamide
           Formyl Transferase (Ph0318) From Pyrococcus Horikoshii
           Ot3
 gi|88192723|pdb|2CZG|B Chain B, Crystal Structure Of Probable Phosphoribosylglycinamide
           Formyl Transferase (Ph0318) From Pyrococcus Horikoshii
           Ot3
 gi|134104146|pdb|2DWC|A Chain A, Crystal Structure Of Probable Phosphoribosylglycinamide
           Formyl Transferase From Pyrococcus Horikoshii Ot3
           Complexed With Adp
 gi|134104147|pdb|2DWC|B Chain B, Crystal Structure Of Probable Phosphoribosylglycinamide
           Formyl Transferase From Pyrococcus Horikoshii Ot3
           Complexed With Adp
 gi|3256709|dbj|BAA29392.1| 433aa long hypothetical phosphoribosylglycinamide formyl
           transferase [Pyrococcus horikoshii OT3]
          Length = 433

 Score = 65.9 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 49/283 (17%), Positives = 100/283 (35%), Gaps = 45/283 (15%)

Query: 19  GKACASALEDAGFKVSQID-------------------VDRSVGL-VLAHLKPDLAFNVL 58
           GK  A   +  G +V  +D                   +D+     V+   KPD     +
Sbjct: 31  GKEIAIEAQRLGVEVVAVDRYANAPAMQVAHRSYVGNMMDKDFLWSVVEREKPDAIIPEI 90

Query: 59  HGNFGEDGLVQAILELLEIPY-THSGILASALSMDKMRSKQ-VVSSCGVPVCPSILVNRF 116
                    + A+ E  +  Y       A+ ++M + R ++ +V    VP    +     
Sbjct: 91  EAIN-----LDALFEFEKDGYFVVPNARATWIAMHRERLRETLVKEAKVPTSRYMYATTL 145

Query: 117 TM--DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS--SWNHGDQLLIEQYV 172
               ++   I  P   K +   S  G   +K  + IP    ++   +    +++++E+++
Sbjct: 146 DELYEACEKIGYPCHTKAIMSSSGKGSYFVKGPEDIPKAWEEAKTKARGSAEKIIVEEHI 205

Query: 173 DGIELTCGVMG----DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           D  ++    +     D + ++          Y  +  Y +       PA+I     +EV 
Sbjct: 206 D-FDVEVTELAVRHFDENGEIVTTFPKPVGHYQIDGDYHASW----QPAEISEKAEREVY 260

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP---GM 268
           R+A      +G  GI   +        KV+  E++ +P   GM
Sbjct: 261 RIAKRITDVLGGLGIFGVEMFV--KGDKVWANEVSPRPHDTGM 301


>gi|116333567|ref|YP_795094.1| biotin carboxylase [Lactobacillus brevis ATCC 367]
 gi|116098914|gb|ABJ64063.1| acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha /
           biotin carboxylase [Lactobacillus brevis ATCC 367]
          Length = 473

 Score = 65.9 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 77/220 (35%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+     + +  +I +         L  DK  ++  + +  VPV P    
Sbjct: 84  AIHPGYGFLSENATFARLCQQCQITFIGPNADLIDLMGDKAHARAAMQANQVPVIPGSDG 143

Query: 112 LVNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL---QSSSWNHGD-Q 165
           +++      Q    I  P ++K   GG   GI  ++    +P       Q +  ++GD  
Sbjct: 144 VLDSADQAVQIAQKIGYPVLLKSAAGGGGKGIREVQTAAELPAAFEQVQQEAKLSYGDAA 203

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+ +     +   V+ D   +V  +         +  K             I     
Sbjct: 204 VYLEKCIGQAKHIEMQVIADNFGEVVYLPERDCSLQRHHQK----VIEESPCGMIDAKQR 259

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + + +    A + +G       +FL D      +++E+N 
Sbjct: 260 QWLGQTVARATRKLGYTNTGTFEFLMD-QDHHFYFIEMNT 298


>gi|91974830|ref|YP_567489.1| carbamoyl-phosphate synthase L chain, ATP-binding [Rhodopseudomonas
           palustris BisB5]
 gi|91681286|gb|ABE37588.1| 3-methylcrotonoyl-CoA carboxylase, alpha subunit [Rhodopseudomonas
           palustris BisB5]
          Length = 679

 Score = 65.9 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 77/220 (35%), Gaps = 18/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E            + +             K  SK ++   GVP+ P    
Sbjct: 86  AVHPGYGFLSESAEFAQACADAGLIFVGPTPQMITAMGSKSGSKALMEKAGVPLVPGYHG 145

Query: 112 --LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
               +     +   I  P ++K   GG   G+ V++    +   ++    ++ +    D+
Sbjct: 146 EAQDDATLAAAADKIGFPVLVKASAGGGGRGMRVVRAANELGEAIVSAKREAKAAFGDDR 205

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           LLIE+YVD    +   ++GD+  ++  +   +        K             +     
Sbjct: 206 LLIEKYVDNPRHIEVQIVGDSHGNLVSLFERECTLQRRHQK----VIEEAPSPTLDAAQR 261

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + V   A  A  A+   G    +F+ D     VF++E+N 
Sbjct: 262 ETVCEAARRAAGAVNYVGAGTIEFVSDGKD--VFFIEMNT 299


>gi|46446406|ref|YP_007771.1| acetyl-CoA carboxylase biotin carboxylase subunit [Candidatus
           Protochlamydia amoebophila UWE25]
 gi|46400047|emb|CAF23496.1| probable biotin carboxylase [Candidatus Protochlamydia amoebophila
           UWE25]
          Length = 453

 Score = 65.9 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 33/220 (15%), Positives = 75/220 (34%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---S 110
            +H  +G   E+    +I E   + +      + AL  DK ++K      G PV P    
Sbjct: 76  AIHPGYGFLSENANFASICESCGLNFIGPAPQSIALLGDKAKAKATAKKAGCPVIPGSDG 135

Query: 111 ILVN-RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS----IPLDLLQSSSWNHGDQ 165
           ++V+ +  +     +  P  IK + GG   GI +   ++           ++        
Sbjct: 136 VVVDIKEALKDAKKLGFPIFIKAVAGGGGKGIRIAYNEEEFTKLFAAARAEAEVSFGNPD 195

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+ + +   +   V+GD       +            K             +   + 
Sbjct: 196 VYLEKMIMNPRHIEVQVLGDKFGHYIHLGERDCTTQRRRQK----LIEESPSPVLSQKMR 251

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +++ + A    +          +FL D   +  +++E+N 
Sbjct: 252 QKIGQAAVNVVKEANYFSAGTVEFLLDK-DQNFYFMEVNT 290


>gi|301299695|ref|ZP_07205948.1| phosphoribosylaminoimidazole carboxylase, ATPase subunit
           [Lactobacillus salivarius ACS-116-V-Col5a]
 gi|300852707|gb|EFK80338.1| phosphoribosylaminoimidazole carboxylase, ATPase subunit
           [Lactobacillus salivarius ACS-116-V-Col5a]
          Length = 383

 Score = 65.9 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 34/189 (17%), Positives = 85/189 (44%), Gaps = 17/189 (8%)

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL--ISPPYVIKPLKGG-SSL 139
           G     ++ D++R K  +   G+ V P   +N+F+   + +  I  P ++K  +GG    
Sbjct: 107 GTELLRITKDRIREKTFLQKSGLKVAPFAEINKFSDLEKEINEIGYPAILKTCEGGYDGK 166

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--DVTEIAVPKS 197
           G +V+  ++    DL+++       Q ++E  ++  ++ C VM   +L  ++T   V ++
Sbjct: 167 GQLVLNSEK----DLVEADEIIKLGQCILEGKIN-FQIECSVMVGRNLRGEITVFPVSEN 221

Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
                    + +    ++PA+I  ++ ++ +  A    +++   GI   +        ++
Sbjct: 222 IHR------NQILHESIVPARISSELQEKAKETAVKVAESLNLCGILGIEMFI-GEDNEI 274

Query: 258 FWLEINVQP 266
           +  E+  +P
Sbjct: 275 YINELAPRP 283


>gi|304569711|ref|YP_011051.2| pyruvate carboxylase [Desulfovibrio vulgaris str. Hildenborough]
 gi|311233772|gb|ADP86626.1| Carbamoyl-phosphate synthase L chain ATP-binding protein
           [Desulfovibrio vulgaris RCH1]
          Length = 1234

 Score = 65.9 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 43/264 (16%), Positives = 98/264 (37%), Gaps = 32/264 (12%)

Query: 19  GKACASALEDAGFKVS-QIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILEL 74
             + A  L   G      +D+DR + L        +    +H  +G   ED    +    
Sbjct: 55  AASAAQELLLLGADPRAYLDIDRIISLAKQRG---VV--AIHPGWGFASEDDRFPSKCHE 109

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ------HLISPPY 128
             + +  S   A  L  +K++ +++    GVPV P    +   +D          I  P 
Sbjct: 110 AGLTFIGSTAEAMNLLGNKVQVRKLARKLGVPVVPG---SEGAVDIPTARKLIDEIGLPI 166

Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQLLIEQYVDG-IELTCGVMG 183
           ++K   GG   GI  I+ +  +     ++S+         +L +E+Y++    +   V+ 
Sbjct: 167 MLKAEGGGGGRGIFAIRDESELDDAFFKASTMAQASFGNPRLFVEKYLESVRHIEIQVIA 226

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP---AKIPLDIYKEVQRLAFLAHQAIGC 240
           D   +         D     ++ +      + P     I  ++ ++++  + +  + +G 
Sbjct: 227 DMYGNAFAF-----DERDCSIQRNHQKLIEITPSPWPGITPELREKLKEYSKMLVREVGY 281

Query: 241 RGISRSDFLFDPLSRKVFWLEINV 264
             ++  +FL      + + +E+N 
Sbjct: 282 HSLATVEFLVTAS-GEAYLIEVNT 304


>gi|229513969|ref|ZP_04403431.1| ribosomal protein S6 modification enzyme [Vibrio cholerae TMA 21]
 gi|229349150|gb|EEO14107.1| ribosomal protein S6 modification enzyme [Vibrio cholerae TMA 21]
          Length = 483

 Score = 65.9 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 29/182 (15%), Positives = 70/182 (38%), Gaps = 10/182 (5%)

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIK 145
             +K+   +++ +  VP   S+++  F  + +      +  P V+K   G  S G++ ++
Sbjct: 275 CTNKVFLTELLETNKVPAPKSVIIRSFDPEWKTGLMEQLDFPMVLKIPDGAFSRGVVKVR 334

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYEL 204
            +Q +  +    + +     +L + +     +   GVM   ++   +  + +  +  Y+ 
Sbjct: 335 NEQELEKEA--GTLFEKSALILAQAFMPTDFDWRIGVMNRQAIFACKYMMSRGHWQIYQH 392

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             S   +           + K V  +A  A   IG       D     +  +V+ +E+N 
Sbjct: 393 HNSGRVTAGGFETLDLKQVPKHVVDVAVKAANLIGGGLYG-VD--LKEIDGQVYVIEVND 449

Query: 265 QP 266
            P
Sbjct: 450 NP 451


>gi|255305265|ref|ZP_05349437.1| putative carbamoyl-phosphate synthase large chain [Clostridium
           difficile ATCC 43255]
          Length = 410

 Score = 65.9 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 36/206 (17%), Positives = 65/206 (31%), Gaps = 36/206 (17%)

Query: 34  SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYT------------H 81
             IDVD      +  +  D            DG++    + L  PY              
Sbjct: 44  EAIDVDVFDFDKIKSIAIDKKI---------DGILTGFTDSLMKPYVYIANELNLPCVIS 94

Query: 82  SGILASALSMDKMRSKQVVSSCGVPVCPSILVNR-FTMDSQHLISPPYVIKPLKGGSSLG 140
              L S    +K   K+   +  +P     ++     ++    ++ P VIKP+ G  S G
Sbjct: 95  CNQLESV--TNKAIMKKYFKNNAIPTTDYCIIESLKDLEKIQGLNFPLVIKPVDGYGSRG 152

Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL-----------TCGVMGDASLDV 189
           +  +   + +      S   +   Q++IE++ +  E+               +GD  L  
Sbjct: 153 VYFVSNIEELIEKFEYSKKASQDGQVIIEEFYESEEIQGLAWVHNGESHVFYIGDRELVN 212

Query: 190 TEIA-VPKSDFYSYELKYSSLNSTHV 214
                  K D   Y  KY       +
Sbjct: 213 IHTGRAGKPDRLLYPSKYCFQYEEEI 238


>gi|120602373|ref|YP_966773.1| pyruvate carboxylase [Desulfovibrio vulgaris DP4]
 gi|120562602|gb|ABM28346.1| Carbamoyl-phosphate synthase L chain, ATP-binding protein
           [Desulfovibrio vulgaris DP4]
          Length = 1234

 Score = 65.9 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 43/264 (16%), Positives = 98/264 (37%), Gaps = 32/264 (12%)

Query: 19  GKACASALEDAGFKVS-QIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILEL 74
             + A  L   G      +D+DR + L        +    +H  +G   ED    +    
Sbjct: 55  AASAAQELLLLGADPRAYLDIDRIISLAKQRG---VV--AIHPGWGFASEDDRFPSKCHE 109

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ------HLISPPY 128
             + +  S   A  L  +K++ +++    GVPV P    +   +D          I  P 
Sbjct: 110 AGLTFIGSTAEAMNLLGNKVQVRKLARKLGVPVVPG---SEGAVDIPTARKLIDEIGLPI 166

Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQLLIEQYVDG-IELTCGVMG 183
           ++K   GG   GI  I+ +  +     ++S+         +L +E+Y++    +   V+ 
Sbjct: 167 MLKAEGGGGGRGIFAIRDESELDDAFFKASTMAQASFGNPRLFVEKYLESVRHIEIQVIA 226

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP---AKIPLDIYKEVQRLAFLAHQAIGC 240
           D   +         D     ++ +      + P     I  ++ ++++  + +  + +G 
Sbjct: 227 DMYGNAFAF-----DERDCSIQRNHQKLIEITPSPWPGITPELREKLKEYSKMLVREVGY 281

Query: 241 RGISRSDFLFDPLSRKVFWLEINV 264
             ++  +FL      + + +E+N 
Sbjct: 282 HSLATVEFLVTAS-GEAYLIEVNT 304


>gi|320093611|ref|ZP_08025498.1| carbamoyl-phosphate synthase, large subunit [Actinomyces sp. oral
           taxon 178 str. F0338]
 gi|319979434|gb|EFW10909.1| carbamoyl-phosphate synthase, large subunit [Actinomyces sp. oral
           taxon 178 str. F0338]
          Length = 1099

 Score = 65.9 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 47/277 (16%), Positives = 97/277 (35%), Gaps = 33/277 (11%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG      L++ G +V  +         D                V  ++A  +PD    
Sbjct: 29  SGTQACRVLKEEGLRVVLVNSNPATIMTDPGIADATYVEPITPEVVASIIAKERPDALLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G    +  V    + +LE   +    + I A     D+   K +V   G  V  S +
Sbjct: 89  TLGGQTALNTAVALAEEGVLERYGVELIGASIDAIRAGEDREAFKAIVERSGAEVARSFI 148

Query: 113 VNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +       +   +  P V++P      LG    +  + +     Q  + +   ++L+E+
Sbjct: 149 AHTMEECHAAAEQLGYPLVVRPSFTMGGLGSGFARTPEDLERIAGQGLAASITTEVLLEE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQ 228
            + G  E    +M D + +V  +   ++      +   + +S  V PA  +     + ++
Sbjct: 209 SILGWKEYELELMRDKADNVVVVCSIENVD---PVGVHTGDSVTVAPALTLTDRELQRLR 265

Query: 229 RLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
            +     + +G   G     F   P + +V  +E+N 
Sbjct: 266 DIGIAVIREVGVDTGGCNIQFAVHPGTGRVIVIEMNP 302



 Score = 47.8 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 38/219 (17%), Positives = 80/219 (36%), Gaps = 18/219 (8%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQHLISPPYV 129
           LE   +P   +   A  L+ D+    +V+ + G P     + +     +     I  P +
Sbjct: 653 LERAGVPVLGTTPHAIDLAEDRGEFGKVLEAAGCPAPAHDVAHSPAQVLPVARSIGFPVL 712

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDL---LQSSSWNHGDQLLIEQYVD-GIELTC-GVMGD 184
           ++P       G+ +I  ++++   L        ++ G  LLI++++D  IE+    +   
Sbjct: 713 VRPSFVLGGRGMAIINDEEALGAYLDRPDIDVLFSRGP-LLIDRFLDAAIEIDVDALYDG 771

Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244
             L +  I     +       +S  +S  + P  +       +        + +G RG+ 
Sbjct: 772 EELFMGAI----MEHIEEAGVHSGDSSCVLPPMTLSARELGRITASTEAIARGVGVRGLI 827

Query: 245 RSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283
              F    LS  ++ +E N +   T     P  +   G 
Sbjct: 828 NIQFAM--LSDTLYVIEANPRASRT----VPFASKATGV 860


>gi|229522227|ref|ZP_04411644.1| ribosomal protein S6 modification protein [Vibrio cholerae TM
           11079-80]
 gi|229341152|gb|EEO06157.1| ribosomal protein S6 modification protein [Vibrio cholerae TM
           11079-80]
          Length = 301

 Score = 65.9 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 62/325 (19%), Positives = 125/325 (38%), Gaps = 58/325 (17%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + +L       R  SL S K    A +  G +V  ID  R   + +   KP++     H 
Sbjct: 3   IGILS------RNASLYSTKRLIEACKQRGHEVRVIDALR-CYMNINSDKPEI-----HY 50

Query: 61  NFGE----DGLVQAI--------------LELLEIPYTHSGILASALSMDKMRSKQVVSS 102
             GE    D ++  I               E++ + Y  +  +A   S DK+RS Q++S 
Sbjct: 51  KGGELAGFDAVIPRIGASVTFYGTAVLRQFEMMGV-YPANESVAITRSRDKLRSMQLLSR 109

Query: 103 CGV--PVCPSILVNRFTMDSQHLISP-PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
            G+  P+           D   ++   P VIK L+G   +G+++ +   +     +  + 
Sbjct: 110 RGIGMPITGFASKPDDVKDLLDMVGGAPVVIKLLEGTQGIGVVLAETRTAAES--VIEAF 167

Query: 160 WNHGDQLLIEQYVD---GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216
                 +++++Y+    G ++ C V+GD  +   +      +F S   +  + +   + P
Sbjct: 168 MGLKANIMVQEYIKEAGGADIRCFVIGDKVIAAMKRQGADGEFRSNLHRGGTASLVKITP 227

Query: 217 AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPE 276
            +         ++ A  A + +G       D      +R    +E+N  PG+  +     
Sbjct: 228 QE---------RKTAIEAAKIMGLNVAG-VD--LLRSARGPLVMEVNSSPGLEGI----- 270

Query: 277 MAAYAGYSFRELLLWMVE-DASCLR 300
             A  G     +++  +E +A+  R
Sbjct: 271 -EAATGKDIAGMIVEFIEKNAASKR 294


>gi|170695333|ref|ZP_02886479.1| acetyl-CoA carboxylase, biotin carboxylase [Burkholderia graminis
           C4D1M]
 gi|170139733|gb|EDT07915.1| acetyl-CoA carboxylase, biotin carboxylase [Burkholderia graminis
           C4D1M]
          Length = 455

 Score = 65.9 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 34/222 (15%), Positives = 78/222 (35%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         +  DK+ +KQ +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAERVEQSGFTFIGPRPETIRMMGDKVTAKQTMIKTGVPCVPGSEG 136

Query: 112 ---LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
                 +  +     +  P +IK   GG   G+ V+  + ++   +     ++       
Sbjct: 137 ALPEDPKEIVKIARQVGYPVIIKAAGGGGGRGMRVVHTEAALVNAVNMTREEAGRAFGNP 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
           Q+ +E++++    +   V+ D+  +   +            K          PA  I   
Sbjct: 197 QVYMEKFLENPRHIEIQVLSDSFKNAVWLGERDCSMQRRHQK-----VIEEAPAPGIARR 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +   +      A + +G  G    +FL+   + + +++E+N 
Sbjct: 252 LIDRIGDRCADACKKMGYLGAGTFEFLY--ENGEFYFIEMNT 291


>gi|167562358|ref|ZP_02355274.1| carbamoyl phosphate synthase large subunit [Burkholderia
           oklahomensis EO147]
          Length = 1088

 Score = 65.9 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 27/207 (13%), Positives = 74/207 (35%), Gaps = 17/207 (8%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQHLISPPYV 129
           LE   +P   +       + D+ R ++++   G+   P+         +     I  P V
Sbjct: 655 LEAHGVPIIGTSPDMIDAAEDRERFQKLLQDLGLRQPPNRTARAEDEALALAEEIGYPLV 714

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++ + + +   + ++   ++   +L+++++ D IE     + D    
Sbjct: 715 VRPSYVLGGRAMEIVHEPRDLERYMREAVKVSNDSPVLLDRFLNDAIECDVDCICDGDAV 774

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                +   +       +S  ++  + P  +  +   E++R      +A+   G+    F
Sbjct: 775 FIGGVMEHIEQAGV---HSGDSACSLPPYSLSKETVAELKRQTGAMAKALNVVGLMNVQF 831

Query: 249 LFD-----------PLSRKVFWLEINV 264
                         P    ++ LE+N 
Sbjct: 832 AIQQVPADANATDGPKEDIIYVLEVNP 858



 Score = 62.1 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 48/285 (16%), Positives = 96/285 (33%), Gaps = 42/285 (14%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +              DV          V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYKVILVNSNPATIMTDPNTADVTYIEPITWEVVERIIEKERPDAILP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G    +  +      +LE   +    +   A   + D+ + K  ++  G+    S  
Sbjct: 89  TMGGQTALNCALDLHHHGVLEKYGVELIGASPAAIDKAEDRQKFKDAMTKIGLGSAKSGI 148

Query: 111 -------ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
                  + V+     +      P VI+P       G  +    +       +    +  
Sbjct: 149 AHSMEEALKVHAEIAAATGGSGYPAVIRPSFTLGGSGGGIAYNREEFEEICKRGLDLSPT 208

Query: 164 DQLLIEQYVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IP 220
            +LLIE+ + G  E    V+ D + + +   ++   D           +S  V PA+ + 
Sbjct: 209 RELLIEESLLGWKEYEMEVVRDRADNCIIVCSIENLDPMGVHT----GDSITVAPAQTLT 264

Query: 221 LDIYKEVQRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
              Y+ ++  +    + IG   G S   F  +P   ++  +E+N 
Sbjct: 265 DKEYQILRNASLAVLREIGVDTGGSNVQFAINPRDGRMVVIEMNP 309


>gi|46449660|gb|AAS96310.1| pyruvate carboxylase, putative [Desulfovibrio vulgaris str.
           Hildenborough]
          Length = 1225

 Score = 65.9 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 43/264 (16%), Positives = 98/264 (37%), Gaps = 32/264 (12%)

Query: 19  GKACASALEDAGFKVS-QIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILEL 74
             + A  L   G      +D+DR + L        +    +H  +G   ED    +    
Sbjct: 46  AASAAQELLLLGADPRAYLDIDRIISLAKQRG---VV--AIHPGWGFASEDDRFPSKCHE 100

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ------HLISPPY 128
             + +  S   A  L  +K++ +++    GVPV P    +   +D          I  P 
Sbjct: 101 AGLTFIGSTAEAMNLLGNKVQVRKLARKLGVPVVPG---SEGAVDIPTARKLIDEIGLPI 157

Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQLLIEQYVDG-IELTCGVMG 183
           ++K   GG   GI  I+ +  +     ++S+         +L +E+Y++    +   V+ 
Sbjct: 158 MLKAEGGGGGRGIFAIRDESELDDAFFKASTMAQASFGNPRLFVEKYLESVRHIEIQVIA 217

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP---AKIPLDIYKEVQRLAFLAHQAIGC 240
           D   +         D     ++ +      + P     I  ++ ++++  + +  + +G 
Sbjct: 218 DMYGNAFAF-----DERDCSIQRNHQKLIEITPSPWPGITPELREKLKEYSKMLVREVGY 272

Query: 241 RGISRSDFLFDPLSRKVFWLEINV 264
             ++  +FL      + + +E+N 
Sbjct: 273 HSLATVEFLVTAS-GEAYLIEVNT 295


>gi|261417033|ref|YP_003250716.1| protein of unknown function DUF201 [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261373489|gb|ACX76234.1| protein of unknown function DUF201 [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 319

 Score = 65.9 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 31/198 (15%), Positives = 69/198 (34%), Gaps = 24/198 (12%)

Query: 71  ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--FTMDSQHLISPPY 128
           + +   +    S +     S+DK +    +   G     S +     +   ++  I  P 
Sbjct: 89  LFDDAGVKIIGSSLELCERSLDKFKMYNWLKDHGYNCAKSYMDRDAFYADLAKGEIQYPV 148

Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD 188
            +KP  G +S+ I      +++ L         H + ++I++++ G E+   V  D    
Sbjct: 149 FVKPACGSASIAISKAFDKETVDL------LCTHSEGMMIQEFLKGQEIGADVYIDM--- 199

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKI--PLDIYKEVQRLAFLAHQAIGCRGISRS 246
                + K     +  K   + +     A      +++  V++ A  +    G  G    
Sbjct: 200 -----ISKKVVSIFTKKKIVMRAGETDKAVSFKNPELFALVKKFAEES----GFTGQIDI 250

Query: 247 DFLFDPLSRKVFWLEINV 264
           D     +  K +  E+N 
Sbjct: 251 DIF--EIDGKYYISEVNP 266


>gi|218261631|ref|ZP_03476373.1| hypothetical protein PRABACTJOHN_02041 [Parabacteroides johnsonii
           DSM 18315]
 gi|218223913|gb|EEC96563.1| hypothetical protein PRABACTJOHN_02041 [Parabacteroides johnsonii
           DSM 18315]
          Length = 1076

 Score = 65.9 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 49/275 (17%), Positives = 99/275 (36%), Gaps = 34/275 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     A+++ G +   I+ +                       V  V+A  +PD    
Sbjct: 27  SGSQALKAIKEEGIQTVLINPNIATVQTSEGVADTVYFLPVTPFFVEKVIAKERPDGILL 86

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
              G    +  V      +LE   +    + + A   + D+    + +   GV    S  
Sbjct: 87  AFGGQTALNCGVALYQSGVLEKYNVRVLGTPVQAIMDTEDRELFVRKLDEIGVKTIKSEA 146

Query: 113 VNRFTMD--SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           V        +   +  P +++       LG      ++ +  D+L   +++   Q+L+E+
Sbjct: 147 VENAEDARRAAAGLGYPVIVRAAYALGGLGSGFCDNEEEL--DVLVEKAFSFSPQVLVEK 204

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQ 228
            + G  E+   V+ D   +   I V   + +   L   +  S  + P++ +    Y +++
Sbjct: 205 SLKGWKEVEYEVVRDRFDN--CITVCNMENFD-PLGIHTGESIVIAPSQTLTNSEYHKLR 261

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            LA    + IG  G     + FDP S     +E+N
Sbjct: 262 ELAIRIIRHIGIVGECNVQYAFDPESEDYRVIEVN 296



 Score = 53.6 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 26/195 (13%), Positives = 75/195 (38%), Gaps = 8/195 (4%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ--HLISPPYV 129
           L+   +    +   +   + D+ +   ++   GV       ++     ++    +  P +
Sbjct: 656 LDEQHVNILGTSAKSIDNAEDREKFSAMLDRIGVDQPRWKELSSMEDINEFVAEVGFPVL 715

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           ++P    S   + V    + +   L  +++ +    +++ Q+++  +    V  DA  D 
Sbjct: 716 VRPSYVLSGAAMNVCSNQEELERFLQLAANVSKKHPVVVSQFIEHAKE---VEMDAVADK 772

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
            EI +     +       S ++T   PA+ + ++  + ++R++    + +   G     F
Sbjct: 773 GEIVMYAISEHIEFAGVHSGDATIQFPAQKLYVETVRRIKRISKQIAKELNISGPFNIQF 832

Query: 249 LFDPLSRKVFWLEIN 263
           L      ++  +E N
Sbjct: 833 L--AKGNEIKVIECN 845


>gi|193212186|ref|YP_001998139.1| carbamoyl-phosphate synthase L chain ATP-binding [Chlorobaculum
           parvum NCIB 8327]
 gi|193085663|gb|ACF10939.1| Carbamoyl-phosphate synthase L chain ATP-binding [Chlorobaculum
           parvum NCIB 8327]
          Length = 494

 Score = 65.9 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 46/278 (16%), Positives = 100/278 (35%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G++V  +         D++              V  ++   KPD    
Sbjct: 29  SGTQACRALKEDGYRVILVNSNPATIMTDIELADATYIEPITPEYVRKIIEKEKPDALLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  V+     +LE   +    + + A   + ++      +   G+ +     
Sbjct: 89  TMGGQTALNTAVKLAESGVLERHGVELIGAKLRAIRKAENREFFGDAMRKLGLEMAKGFF 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           V   +   ++   I  P VI+P       G    +        + +  + +   ++L+E+
Sbjct: 149 VRNEKEAKEALDEIGLPIVIRPSFTLGGTGGGFAETKADYYDVVRRGLAESPIGEVLVEE 208

Query: 171 YVDG-IELTCGVMGDASLDV-TEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + +V    ++   D           +S  V PA+ +    Y+E+
Sbjct: 209 SLIGWKEYELEVIRDLADNVIIVCSIENVDPMGVHT----GDSITVAPAQTLTDRQYQEL 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P   ++  +E+N 
Sbjct: 265 RDASIKIIREIGVETGGSNIQFSINPKDGRIVIIEMNP 302


>gi|183602593|ref|ZP_02963958.1| CarB [Bifidobacterium animalis subsp. lactis HN019]
 gi|219683635|ref|YP_002470018.1| CarB [Bifidobacterium animalis subsp. lactis AD011]
 gi|241190667|ref|YP_002968061.1| carbamoylphosphate synthase large subunit [Bifidobacterium animalis
           subsp. lactis Bl-04]
 gi|241196073|ref|YP_002969628.1| carbamoylphosphate synthase large subunit [Bifidobacterium animalis
           subsp. lactis DSM 10140]
 gi|254813559|sp|B8DTW3|CARB_BIFA0 RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|183218234|gb|EDT88880.1| CarB [Bifidobacterium animalis subsp. lactis HN019]
 gi|219621285|gb|ACL29442.1| CarB [Bifidobacterium animalis subsp. lactis AD011]
 gi|240249059|gb|ACS45999.1| Carbamoylphosphate synthase large subunit [Bifidobacterium animalis
           subsp. lactis Bl-04]
 gi|240250627|gb|ACS47566.1| Carbamoylphosphate synthase large subunit [Bifidobacterium animalis
           subsp. lactis DSM 10140]
 gi|289178405|gb|ADC85651.1| Carbamoyl-phosphate synthase large chain [Bifidobacterium animalis
           subsp. lactis BB-12]
 gi|295793656|gb|ADG33191.1| Carbamoylphosphate synthase large subunit [Bifidobacterium animalis
           subsp. lactis V9]
          Length = 1136

 Score = 65.9 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 46/288 (15%), Positives = 100/288 (34%), Gaps = 36/288 (12%)

Query: 7   GISSEREVSLSSGKACASALEDAGF-------------------KVSQIDVDRS--VGLV 45
           G ++E + S   G      L + G                      + ID   +  +  +
Sbjct: 21  GQAAEFDYS---GTQACRVLREEGVRVILVNSNPATIMTDPEMADATYIDPISTPILEKI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +A  +PD     L G    +  V      +L+   +    + + A     D+   K+VV 
Sbjct: 78  IAKERPDALLPTLGGQTALNAAVALGEAGVLKKYNVELIGASLEAIDRGEDRESFKKVVK 137

Query: 102 SCGVPVCPSILVNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G     S + +              P V++P      LG  +    + +         
Sbjct: 138 EAGAESARSDIAHTLEEVDAIAERFGFPLVVRPSFTMGGLGSGIAHDTEELHRIAGAGIH 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
           ++  D++LIE+ ++G  E    +M D + +V  +   ++      +   + +S  V P  
Sbjct: 198 YSPTDEVLIEEGIEGWKEYELELMRDRNDNVVVVCPIENVD---PVGVHTGDSITVAPVF 254

Query: 219 -IPLDIYKEVQRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
            +    Y++++ +     + +G   G     F   P + ++  +E+N 
Sbjct: 255 TLTDREYQKLRDIGIAIIRGVGVDTGGCNIQFAIHPDTGRIIVIEMNP 302



 Score = 53.6 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 34/233 (14%), Positives = 74/233 (31%), Gaps = 29/233 (12%)

Query: 67  LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTMDSQHLI 124
            + A L+   +P   +   A  L+ ++    +V+    +        L      ++ H I
Sbjct: 651 SLAARLKAAGVPILGTTPEAIDLAENRELFGEVLRQEHLNAPRFGTALSLEEAREAAHNI 710

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
             P +++P       G+ ++  D  +   + ++ S    D +     V G   +  ++  
Sbjct: 711 GYPVLVRPSYVLGGRGMEIVYDDAQLETYVNRALSEAKADTV-----VSGRLPSPLLIDK 765

Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK--------------IPLDIYKEVQRL 230
              D  EI V     +  E  Y      H+  A               +  D  + ++  
Sbjct: 766 FLQDAIEIDV--DALFDGEELYIGGIMEHIEEAGVHSGDAACTLPPSTLSDDQIRRLREA 823

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283
                +    RG+    + F      ++ +E N +   T     P  +   G 
Sbjct: 824 TLAIAKGCQVRGLMNVQYAFMA--NTLYVIEANPRASRT----VPFASKATGV 870


>gi|154506076|ref|ZP_02042814.1| hypothetical protein RUMGNA_03618 [Ruminococcus gnavus ATCC 29149]
 gi|153793575|gb|EDN75995.1| hypothetical protein RUMGNA_03618 [Ruminococcus gnavus ATCC 29149]
          Length = 1067

 Score = 65.9 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 27/196 (13%), Positives = 70/196 (35%), Gaps = 8/196 (4%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTMDSQHLISPPYV 129
           L  + +P   +       + D+    +++  C +P      +       +  + +  P +
Sbjct: 647 LMKMGVPILGTSAENVDKAEDRELFDEILEECEIPRPTGGTVFTAEEAKEVANRLGYPVL 706

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           ++P       G+ +   D  I   +   +       +L+++Y+ G E+    + D     
Sbjct: 707 VRPSYVLGGQGMQIAINDNDIDEFIGIINRIAQDHPILVDKYLQGKEIEVDAVCDGE--- 763

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
            +I +P    +       S +S  V PA+ +      ++        +++   G+    F
Sbjct: 764 -DILIPGIMEHIERAGIHSGDSISVYPAQSLTQKAKDKIAEYTRRLAKSLHVIGLINIQF 822

Query: 249 LFDPLSRKVFWLEINV 264
           +       V+ +E+N 
Sbjct: 823 IVCGEDD-VYVIEVNP 837



 Score = 56.7 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 42/286 (14%), Positives = 97/286 (33%), Gaps = 33/286 (11%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQID-------VDRSVG--------------LV 45
           G ++E + +   G     +L++ G +V  ++        D+ +                +
Sbjct: 21  GQAAEFDYA---GTQACRSLKEEGIEVVLLNSNPATIMTDKDIADKVYIEPLTVEVVEQL 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   +PD     L G  G +  ++      L    +    +       + D++  K  + 
Sbjct: 78  ILKEQPDSVLPTLGGQAGLNLAMELEEAGFLREHNVRLIGTTSETIKKAEDRLEFKATME 137

Query: 102 SCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G PV  S++V      +   + I  P V++P       G  +    + +   L     
Sbjct: 138 KIGEPVAASLVVENVEDGLAFANKIGYPVVLRPAYTLGGSGGGIAHDSEQLVEILENGLR 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   Q+L+E+ + G  E+   VM D + +   I V   +       ++  +        
Sbjct: 198 LSRVGQVLVERCIAGWKEIEYEVMRDGNGN--CITVCNMENIDPVGVHTGDSIVVAPSQT 255

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +    Y+ ++  A      +   G     +   P + +   +E+N 
Sbjct: 256 LGDKEYQMLRTSALNIISELNITGGCNVQYALHPETFEYCVIEVNP 301


>gi|15642331|ref|NP_231964.1| ribosomal protein S6 modification protein-related protein [Vibrio
           cholerae O1 biovar El Tor str. N16961]
 gi|121586169|ref|ZP_01675960.1| hypothetical protein VC274080_2339 [Vibrio cholerae 2740-80]
 gi|147674943|ref|YP_001217836.1| hypothetical protein VC0395_A1912 [Vibrio cholerae O395]
 gi|153817861|ref|ZP_01970528.1| hypothetical protein A5C_2404 [Vibrio cholerae NCTC 8457]
 gi|153821499|ref|ZP_01974166.1| hypothetical protein A5E_2660 [Vibrio cholerae B33]
 gi|227082457|ref|YP_002811008.1| ribosomal protein S6 modification protein-related protein [Vibrio
           cholerae M66-2]
 gi|229507601|ref|ZP_04397106.1| ribosomal protein S6 modification enzyme [Vibrio cholerae BX
           330286]
 gi|229512203|ref|ZP_04401682.1| ribosomal protein S6 modification enzyme [Vibrio cholerae B33]
 gi|229519339|ref|ZP_04408782.1| ribosomal protein S6 modification enzyme [Vibrio cholerae RC9]
 gi|229607107|ref|YP_002877755.1| ribosomal protein S6 modification enzyme [Vibrio cholerae MJ-1236]
 gi|254225826|ref|ZP_04919430.1| hypothetical protein VCV51_1561 [Vibrio cholerae V51]
 gi|254849454|ref|ZP_05238804.1| ribosomal protein S6 modification protein-related protein [Vibrio
           cholerae MO10]
 gi|255746987|ref|ZP_05420932.1| ribosomal protein S6 glutaminyl transferase related protein [Vibrio
           cholera CIRS 101]
 gi|262161471|ref|ZP_06030581.1| ribosomal protein S6 glutaminyl transferase related protein [Vibrio
           cholerae INDRE 91/1]
 gi|262168321|ref|ZP_06036018.1| ribosomal protein S6 glutaminyl transferase related protein [Vibrio
           cholerae RC27]
 gi|262190400|ref|ZP_06048659.1| ribosomal protein S6 glutaminyl transferase related protein [Vibrio
           cholerae CT 5369-93]
 gi|298500304|ref|ZP_07010109.1| conserved hypothetical protein [Vibrio cholerae MAK 757]
 gi|9656900|gb|AAF95477.1| ribosomal protein S6 modification protein-related protein [Vibrio
           cholerae O1 biovar El Tor str. N16961]
 gi|121549581|gb|EAX59605.1| hypothetical protein VC274080_2339 [Vibrio cholerae 2740-80]
 gi|125621640|gb|EAZ49970.1| hypothetical protein VCV51_1561 [Vibrio cholerae V51]
 gi|126511569|gb|EAZ74163.1| hypothetical protein A5C_2404 [Vibrio cholerae NCTC 8457]
 gi|126520992|gb|EAZ78215.1| hypothetical protein A5E_2660 [Vibrio cholerae B33]
 gi|146316826|gb|ABQ21365.1| hypothetical protein VC0395_A1912 [Vibrio cholerae O395]
 gi|227010345|gb|ACP06557.1| ribosomal protein S6 modification protein-related protein [Vibrio
           cholerae M66-2]
 gi|227014228|gb|ACP10438.1| ribosomal protein S6 modification protein-related protein [Vibrio
           cholerae O395]
 gi|229344028|gb|EEO09003.1| ribosomal protein S6 modification enzyme [Vibrio cholerae RC9]
 gi|229352168|gb|EEO17109.1| ribosomal protein S6 modification enzyme [Vibrio cholerae B33]
 gi|229355106|gb|EEO20027.1| ribosomal protein S6 modification enzyme [Vibrio cholerae BX
           330286]
 gi|229369762|gb|ACQ60185.1| ribosomal protein S6 modification enzyme [Vibrio cholerae MJ-1236]
 gi|254845159|gb|EET23573.1| ribosomal protein S6 modification protein-related protein [Vibrio
           cholerae MO10]
 gi|255735389|gb|EET90789.1| ribosomal protein S6 glutaminyl transferase related protein [Vibrio
           cholera CIRS 101]
 gi|262023213|gb|EEY41917.1| ribosomal protein S6 glutaminyl transferase related protein [Vibrio
           cholerae RC27]
 gi|262028782|gb|EEY47436.1| ribosomal protein S6 glutaminyl transferase related protein [Vibrio
           cholerae INDRE 91/1]
 gi|262033722|gb|EEY52203.1| ribosomal protein S6 glutaminyl transferase related protein [Vibrio
           cholerae CT 5369-93]
 gi|297540997|gb|EFH77051.1| conserved hypothetical protein [Vibrio cholerae MAK 757]
          Length = 483

 Score = 65.9 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 29/182 (15%), Positives = 70/182 (38%), Gaps = 10/182 (5%)

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIK 145
             +K+   +++ +  VP   S+++  F  + +      +  P V+K   G  S G++ ++
Sbjct: 275 CTNKVFLTELLETNKVPAPKSVIIRSFDPEWKTGLMEQLDFPMVLKIPDGAFSRGVVKVR 334

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYEL 204
            +Q +  +    + +     +L + +     +   GVM   ++   +  + +  +  Y+ 
Sbjct: 335 NEQELEKEA--GTLFEKSALILAQAFMPTDFDWRIGVMNRQAIFACKYMMSRGHWQIYQH 392

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             S   +           + K V  +A  A   IG       D     +  +V+ +E+N 
Sbjct: 393 HNSGRVTAGGFETLDLKQVPKHVVDVAVKAANLIGGGLYG-VD--LKEIDGQVYVIEVND 449

Query: 265 QP 266
            P
Sbjct: 450 NP 451


>gi|283783480|ref|YP_003374234.1| phosphoribosylglycinamide synthetase, ATP-grasp (A) domain protein
           [Gardnerella vaginalis 409-05]
 gi|283441032|gb|ADB13498.1| phosphoribosylglycinamide synthetase, ATP-grasp (A) domain protein
           [Gardnerella vaginalis 409-05]
          Length = 427

 Score = 65.9 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 44/282 (15%), Positives = 104/282 (36%), Gaps = 46/282 (16%)

Query: 31  FKVSQIDVD--RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIP--YTHSGILA 86
            +   +D+   + +  +++++ PD+    +     E      +L+               
Sbjct: 61  HEYHVLDMSNPQELQELISNVNPDIIIPEVEAIATE------VLKDAAKKNIQVAPSSDI 114

Query: 87  SALSMDKMRSKQVV-SSCGVPVCPSILVNRFTM--DSQHLISPPYVIKPLKGGSSLGIIV 143
           +A++MD+ R +++     G+P  P    + +    D    +  P V+KP+   S  G  +
Sbjct: 115 AAIAMDRERLRRIAHEDLGLPTTPYCFASSYEELEDGAKKVGYPCVVKPVMSSSGHGQSI 174

Query: 144 IKKDQSIPLDLLQS-----SSWNHGD---QLLIEQYVDGI-ELTCGVMGDASLDVTEIAV 194
           ++  +++     ++     ++  H +   ++++E       ELT   +   +   T   +
Sbjct: 175 VRSSENLLAAWNEAQHGRRAAAGHENECSRVIVEALAPLDYELTVLTISSCAGITTCEPI 234

Query: 195 PKSDFY-SYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI-------GCRGIS-- 244
            +      Y   +         PA IP  I    + +A  A + +       G  G    
Sbjct: 235 AQCQQDGDYRESW--------QPANIPESIRTNAKDIAKRAVEGLTDIAQEAGETGWGIY 286

Query: 245 RSDFLFDPLSRKVFWLEINVQP---GM-TPVS-IFPEMAAYA 281
             +         + + E++ +P   GM T +S  + E A +A
Sbjct: 287 GVELFVLK-DGSLLFNELSPRPHDTGMVTMISQHYSEFALHA 327


>gi|256823599|ref|YP_003147562.1| carbamoyl-phosphate synthase large subunit [Kangiella koreensis DSM
           16069]
 gi|256797138|gb|ACV27794.1| carbamoyl-phosphate synthase, large subunit [Kangiella koreensis
           DSM 16069]
          Length = 1074

 Score = 65.9 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 47/278 (16%), Positives = 100/278 (35%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + GF+V  +              DV          V  ++   KPD    
Sbjct: 29  SGAQACKALREEGFRVILVNSNPATIMTDPNMADVTYIEPIHWEVVAKIIEKEKPDAILP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +    + +LE+  +    +   A   + D+    + +S  G+      +
Sbjct: 89  TMGGQTALNCALDLASRGVLEIHGVEMIGATREAIDKAEDRELFAKAMSKIGLDQPRQQV 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +        Q  +  P +I+P       G  +    +      L+    +  ++LLI++
Sbjct: 149 AHSLEDAWKVQKEVGFPCIIRPSFTMGGTGGGIAYNKEEFEEICLRGLDLSPTNELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + +   I   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIICSIEN----FDPMGVHTGDSITVAPAQTLTDKEYQRM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RNASLAVLREIGVETGGSNVQFAINPENGRMTIIEMNP 302



 Score = 64.0 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 29/196 (14%), Positives = 79/196 (40%), Gaps = 8/196 (4%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--QHLISPPYV 129
           LE   +P   +   A   + D+ R ++ ++  G+   P+               I  P V
Sbjct: 653 LEAAGVPIIGTSPDAIDRAEDRERFQRAINRLGLLQPPNRTARNMEEGVRLAEEIGYPLV 712

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  ++ +   +  + S ++   +L+++++ D IE+    + D    
Sbjct: 713 VRPSYVLGGRAMEIVYNEEELRRYMNDAVSVSNESPVLLDRFLDDAIEVDVDAIFDGKNI 772

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           +    +   +       +S  ++  + P  +  ++  E++R   +  + +  RG+  + F
Sbjct: 773 LIGGIMEHIEQAGV---HSGDSACSIPPFSLSKEVQDELRRQMLVMAKELKVRGLMNAQF 829

Query: 249 LFDPLSRKVFWLEINV 264
                  ++F LE+N 
Sbjct: 830 AI--QGERIFILEVNP 843


>gi|221199838|ref|ZP_03572881.1| acetyl-CoA carboxylase, biotin carboxylase [Burkholderia
           multivorans CGD2M]
 gi|221207493|ref|ZP_03580502.1| acetyl-CoA carboxylase, biotin carboxylase [Burkholderia
           multivorans CGD2]
 gi|221172696|gb|EEE05134.1| acetyl-CoA carboxylase, biotin carboxylase [Burkholderia
           multivorans CGD2]
 gi|221180077|gb|EEE12481.1| acetyl-CoA carboxylase, biotin carboxylase [Burkholderia
           multivorans CGD2M]
          Length = 496

 Score = 65.9 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 76/220 (34%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+    A +E   + +        A   DK R++       VP  P    
Sbjct: 91  AIHPGYGFLSENAAFAAQVEAAGLVFVGPDAQVIATMGDKARARDTARRANVPTVPGSDG 150

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK----DQSIPLDLLQSSSWNHGDQ 165
            +       +    I  P +IK   GG   GI V       +  +PL   ++ +      
Sbjct: 151 VVQSLDAAREVAARIGYPVMIKAAAGGGGRGIRVAHDAAQLEAELPLAQREAQAAFGDGG 210

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+++     +   V+GD   DV  +   +        K             +   + 
Sbjct: 211 VYLERFIARARHIEVQVLGDGR-DVVHLFERECSLQRRRQKIL----EEAPSPSLTPALR 265

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            E+   A    + +G R     ++LFD    + +++E+N 
Sbjct: 266 AELCASATRLAREVGYRSAGTLEYLFDDTRGEFYFIEMNT 305


>gi|90961492|ref|YP_535408.1| phosphoribosylaminoimidazole carboxylase ATPase subunit
           [Lactobacillus salivarius UCC118]
 gi|90820686|gb|ABD99325.1| Phosphoribosylaminoimidazole carboxylase NCAIR mutase subunit
           [Lactobacillus salivarius UCC118]
          Length = 373

 Score = 65.9 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 34/189 (17%), Positives = 85/189 (44%), Gaps = 17/189 (8%)

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL--ISPPYVIKPLKGG-SSL 139
           G     ++ D++R K  +   G+ V P   +N+F+   + +  I  P ++K  +GG    
Sbjct: 97  GTELLRITKDRIREKTFLQKSGLKVAPFAEINKFSDLEKKINEIGYPAILKTCEGGYDGK 156

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--DVTEIAVPKS 197
           G +V+  ++    DL+++       Q ++E  ++  ++ C VM   +L  ++T   V ++
Sbjct: 157 GQLVLNSEK----DLVEADEIIKLGQCILEGKIN-FQMECSVMVGRNLRGEITVFPVSEN 211

Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
                    + +    ++PA+I  ++ ++ +  A    +++   GI   +        ++
Sbjct: 212 IHR------NQILHESIVPARISSELQEKAKETAVKVAESLNLCGILGIEMFI-GEDNEI 264

Query: 258 FWLEINVQP 266
           +  E+  +P
Sbjct: 265 YINELAPRP 273


>gi|78485224|ref|YP_391149.1| carbamoyl-phosphate synthase, large subunit [Thiomicrospira
           crunogena XCL-2]
 gi|78363510|gb|ABB41475.1| carbamoyl-phosphate synthase large subunit [Thiomicrospira
           crunogena XCL-2]
          Length = 1070

 Score = 65.9 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 48/278 (17%), Positives = 102/278 (36%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G++V  +         D +            ++V  ++A  +PD    
Sbjct: 29  SGVQACKALKEEGYRVVLVNSNPATIMTDPEMADATYIEPIEWKTVRNIIAKERPDAILP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      +LE   +    +   A   + ++ R +Q ++  G+ +  S +
Sbjct: 89  TMGGQTALNCALDLDNHGVLEEFGVELIGANADAIDKAENRDRFRQAMNRIGLDMPVSDV 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +      + Q  +  P +I+P       G  +                 +   +LLIE+
Sbjct: 149 AHNLEEAWEIQQRVGFPTIIRPSFTLGGSGGGIAYNKTEFEQICKFGLDLSPTKELLIEE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + +   I   ++ D           +S  V PA+ +    Y+ +
Sbjct: 209 SILGWKEYEMEVVRDKNDNAIIICSIENLDPMGVHT----GDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P S ++  +E+N 
Sbjct: 265 RNASLAVLREIGVETGGSNVQFSINPESGRMIIIEMNP 302



 Score = 65.1 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 32/196 (16%), Positives = 77/196 (39%), Gaps = 8/196 (4%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQHLISPPYV 129
           LE   +P   +   +  L+ D+ R +Q++    +   P+         +   + I  P V
Sbjct: 656 LEAAGVPIIGTSPESIDLAEDRERFQQLLHGLELKQPPNRTARSEDQALALANEIGYPLV 715

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  D  +   + ++   ++   +L+++++ D IEL    + D    
Sbjct: 716 VRPSYVLGGRAMEIVYNDTDLTRYMTEAVKVSNDSPVLLDRFLDDAIELDVDAVCDGEQV 775

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           V    +   +       +S  ++  + P  IP+ I  E++        A+G   +   + 
Sbjct: 776 VIGGVMEHIEQAGI---HSGDSACSLPPYSIPMHIQDEIRNQVEKM--ALGLNVVGLMNT 830

Query: 249 LFDPLSRKVFWLEINV 264
            F      ++ LE+N 
Sbjct: 831 QFAVKGEDIYVLEVNP 846


>gi|311743190|ref|ZP_07716998.1| acetyl-coA carboxylase carboxyl transferase subunit alpha
           [Aeromicrobium marinum DSM 15272]
 gi|311313870|gb|EFQ83779.1| acetyl-coA carboxylase carboxyl transferase subunit alpha
           [Aeromicrobium marinum DSM 15272]
          Length = 588

 Score = 65.9 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 37/216 (17%), Positives = 72/216 (33%), Gaps = 16/216 (7%)

Query: 59  HGNFGEDGLV-QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117
           +G   E+    QA+L+   + +      A     DK ++KQ+      P+ P        
Sbjct: 85  YGFLAENAEFAQAVLD-AGLIWIGPSPQAIDALGDKAKAKQIAQKANAPLAPGTKDPVKD 143

Query: 118 MDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL----DLLQSSSWNHGDQLLIE 169
            D           P  IK + GG   G+ V +  + IP      + ++ S     + L+E
Sbjct: 144 ADEVIAFAEANGLPVAIKAVFGGGGRGLKVARTIEEIPEQYESAVREAVSAFGRGECLVE 203

Query: 170 QYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           +++D    +    + D   +V  ++           K             +  D    + 
Sbjct: 204 KFLDQPRHVETQCLADTHGNVVVVSTRDCSLQRRHQK----LVEEAPAPFLTDDQIDRLY 259

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +    +  G  G    +FL       + +LE+N 
Sbjct: 260 TSSKAILKEAGYVGAGTCEFLV-ARDGTISFLEVNT 294


>gi|284997965|ref|YP_003419732.1| carbamoyl-phosphate synthase, large subunit [Sulfolobus islandicus
           L.D.8.5]
 gi|284445860|gb|ADB87362.1| carbamoyl-phosphate synthase, large subunit [Sulfolobus islandicus
           L.D.8.5]
          Length = 1051

 Score = 65.9 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 52/299 (17%), Positives = 112/299 (37%), Gaps = 38/299 (12%)

Query: 18  SGKACASALEDAGFKVSQI------------DVDR---------SVGLVLAHLKPDLAFN 56
           SG     AL++ G +   +              D+         +V  V+   +PD    
Sbjct: 27  SGSQALKALKEEGIETVLVNSNVATVQTSKKFADKLYMLPVVWWAVEKVIEKERPDGIMI 86

Query: 57  VLHG----NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
              G    N G D   + +L+   +    + I     ++ + + ++ +    +PV PS+ 
Sbjct: 87  GFGGQTALNVGVDLHKKGVLQKYGVKVLGTQIDGIEKALSREKFRETMIENNLPVPPSLS 146

Query: 113 VNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  + +  ++  P +++        G +V   ++ +  ++ ++ S ++  ++LIE+
Sbjct: 147 ARSEEEAIKNAKIVGYPVMVRVSFNLGGRGSMVAWTEEDLKKNIRRALSQSYIGEVLIEK 206

Query: 171 YV-DGIELTCGVMGDASLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
           Y+   IEL   VM D   + + IA  ++ D            ST V P + +    Y+ +
Sbjct: 207 YLYHWIELEYEVMRDKKGNSSVIACIENLDPMGVHT----GESTVVAPCQTLDNLEYQNM 262

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           +       ++I   G     F  +P   + + +E    P M+  S     +   GY   
Sbjct: 263 RTYTIEVARSINLIGECNVQFALNPRGYEYYIIE--TNPRMSRSS--ALASKATGYPLA 317



 Score = 57.4 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 39/316 (12%), Positives = 108/316 (34%), Gaps = 47/316 (14%)

Query: 7   GISSEREVSLSS-GKACASALED---AGFKVSQIDVDRSVGLVL--------------AH 48
           G+S E + S+ S  +A +   ++     +    +  D  +   L                
Sbjct: 567 GVSVEFDWSVVSLMEAASKYFDEVAILNYNPETVSTDWDIARKLYFDEINVERVLDLIKK 626

Query: 49  LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
            K         G  G    +   LE   +    +   +  ++ ++ +  +++   G+   
Sbjct: 627 EKFRYVATFSGGQIGN--SIAKELEENGVRLLGTSGSSVDIAENREKFSKLLDKLGISQP 684

Query: 109 PSILVNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQL 166
             +         +  + +  P +++P    S   + +   ++ +   + +++  +    +
Sbjct: 685 NWVSATSLEEIKKFVNEVGFPVLVRPSYVLSGSSMKIAYSEEELYEYVRRATEISPKYPV 744

Query: 167 LIEQYVD-GIELTC-GV-MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
           +I +Y++  IE    GV  G+  L +T   V ++  +S        ++T  +P + +  +
Sbjct: 745 VISKYIENAIEAEVDGVSDGNRVLGITLEHVEEAGVHS-------GDATMSIPFRKLSEN 797

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN-----VQPGMTP----VSI 273
              +++       + +  +G     F+          +E+N       P  +     +++
Sbjct: 798 SVNKMRENVLSLARELNIKGPFNVQFVV--KDNTPHIIELNLRASRSMP-FSSKAKGINL 854

Query: 274 FPEMAAY--AGYSFRE 287
             E       G  F E
Sbjct: 855 INEAMKAIFNGLDFSE 870


>gi|262376632|ref|ZP_06069860.1| carbamoyl-phosphate synthase, large subunit [Acinetobacter lwoffii
           SH145]
 gi|262308342|gb|EEY89477.1| carbamoyl-phosphate synthase, large subunit [Acinetobacter lwoffii
           SH145]
          Length = 1076

 Score = 65.9 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 32/196 (16%), Positives = 75/196 (38%), Gaps = 8/196 (4%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQHLISPPYV 129
           LE    P   +   A   + D+ R +Q++    +    + +V      M     +  P V
Sbjct: 653 LEEAGAPIIGTSPDAIDRAEDRERFQQMIQRLQLRQPNNSIVKSAEEGMAEASKVGYPLV 712

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  D+ +   L  +   ++   +L+++++ D IE+    + D    
Sbjct: 713 VRPSYVLGGRAMEIVYNDEELKRYLRDAVQASNEAPVLLDRFLDDAIEVDVDCVSDGKDV 772

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           V    +   +       +S  ++  + P  +  +I  E++R      + +G  G+    F
Sbjct: 773 VIGGIMQHIEQAGI---HSGDSACSIPPYSLSKEIQDEMRRQTVAMAKELGVIGLMNVQF 829

Query: 249 LFDPLSRKVFWLEINV 264
                   V+ LE+N 
Sbjct: 830 AV--KGEDVYILEVNP 843



 Score = 62.8 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 96/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D              ++V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPTMADATYIEPITWQTVAAIIEKERPDAVLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      ILE   +    +   A   + D+    Q +   G+    + +
Sbjct: 89  TMGGQTALNCALALDEHGILEKFNVELIGATKEAIEKAEDRKLFDQAMRKIGLECPKADV 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  ++ Q     P +I+P       G  +    +       +    +   QLLI++
Sbjct: 149 AESMEHALEIQARFGFPVIIRPSFTMGGSGGGIAYNKEEFIEICERGFDLSPTKQLLIDE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + +   +   ++    ++       +S  V PA+ +    ++ +
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCTIEN----FDPMGVHTGDSITVAPAQTLTDKEFQLL 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F   P + ++  +E+N 
Sbjct: 265 RNASLAVLREIGVETGGSNVQFGICPNTGRMVVIEMNP 302


>gi|260773443|ref|ZP_05882359.1| glutathione synthase/Ribosomal protein S6 modification enzyme
           (glutaminyl transferase) [Vibrio metschnikovii CIP
           69.14]
 gi|260612582|gb|EEX37785.1| glutathione synthase/Ribosomal protein S6 modification enzyme
           (glutaminyl transferase) [Vibrio metschnikovii CIP
           69.14]
          Length = 483

 Score = 65.9 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 33/182 (18%), Positives = 74/182 (40%), Gaps = 10/182 (5%)

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH----LISPPYVIKPLKGGSSLGIIVIK 145
             +K+   +++    VP   S++V  F  D +      +  P V+K   G  S G++ ++
Sbjct: 275 CTNKVFLTELLQRNKVPAPKSVIVQGFDNDWKSYLMGQLDFPMVLKIPDGAFSRGVVKVR 334

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYEL 204
            +Q +  +   ++ ++    +L + +     +   GVM   ++   +  + +  +  Y+ 
Sbjct: 335 NEQELEKEA--NALFSKSALILAQAFMPTDFDWRIGVMNRQAIYACKYMMSRGHWQIYQH 392

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             S   S+          + K V  +A  A   IG  G+   D     +  +V+ +E+N 
Sbjct: 393 HSSGRVSSGGFETFDLKQVPKSVVDVAVKAANLIG-SGLYGVD--LKEIDGQVYVIEVND 449

Query: 265 QP 266
            P
Sbjct: 450 NP 451


>gi|302534518|ref|ZP_07286860.1| acetyl-CoA carboxylase, biotin carboxylase [Streptomyces sp. C]
 gi|302443413|gb|EFL15229.1| acetyl-CoA carboxylase, biotin carboxylase [Streptomyces sp. C]
          Length = 714

 Score = 65.9 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 37/200 (18%), Positives = 76/200 (38%), Gaps = 14/200 (7%)

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP----SILVNRFTMDSQHLISPPYVI 130
             + +      A +L  DK+ +K+ V + GVPV P    S L +     +   I  P ++
Sbjct: 98  AGLAFIGPPASAISLMGDKITAKETVRAAGVPVVPGSSGSGLTDAELAAAASEIGMPVLL 157

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQLLIEQYVD-GIELTCGVMGDA 185
           KP  GG   G+ +++ +  +  ++  +          D LL+E+++D    +   V+ DA
Sbjct: 158 KPSAGGGGKGMRLVRDEALLAEEIAAARREAKSSFGDDTLLVERWIDRPRHIEIQVLADA 217

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
             +V  +   +        K             +       +   A  A ++ G  G   
Sbjct: 218 HGNVVHLGERECSLQRRHQK----VIEEAPSVLLDEKTRAAMGAAAVEAARSCGYVGAGT 273

Query: 246 SDFLFDPLS-RKVFWLEINV 264
            +F+         +++E+N 
Sbjct: 274 VEFIVPGGDPSSYYFMEMNT 293


>gi|253575041|ref|ZP_04852380.1| phosphoribosylaminoimidazole carboxylase, ATPase subunit
           [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251845497|gb|EES73506.1| phosphoribosylaminoimidazole carboxylase, ATPase subunit
           [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 404

 Score = 65.9 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 41/209 (19%), Positives = 82/209 (39%), Gaps = 21/209 (10%)

Query: 65  DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQH 122
           D  V A+LE     Y   G      +  ++R K+ + + GV V P   +        +  
Sbjct: 93  DAGVAALLEEAS--YVPQGSRLLYTTQHRLREKRAIEAAGVKVAPYAEIGSEEELRAAVA 150

Query: 123 LISPPYVIKPLKGG-SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
            +  P V+K   GG    G  VI+ +  I     + S    G +L++EQ+V  +      
Sbjct: 151 RLGLPAVLKTATGGYDGKGQWVIRGEDEIAPAYAELSKA--GTELVLEQFVPFV------ 202

Query: 182 MGDASLDVTEIAVPKSDFYSY-ELKYSSLN---STHVLPAKIPLDIYKEVQRLAFLAHQA 237
                L V     P+ +  ++   +   ++      ++PA++   + +E +RLA    + 
Sbjct: 203 ---KELSVIAARSPRGEIKTFPAAENIHVDNILHVSIVPARVEEQVQREAERLAARIAEG 259

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQP 266
           +   G+   +        ++F  E+  +P
Sbjct: 260 LEAVGLLAVEMFLTE-DGELFVNELAPRP 287


>gi|255533173|ref|YP_003093545.1| acetyl-CoA carboxylase, biotin carboxylase [Pedobacter heparinus
           DSM 2366]
 gi|255346157|gb|ACU05483.1| acetyl-CoA carboxylase, biotin carboxylase [Pedobacter heparinus
           DSM 2366]
          Length = 496

 Score = 65.9 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 85/220 (38%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+     +++   +        A  +  +K+ +K       +P+ P    
Sbjct: 76  AIHPGYGFLSENAAFARLVKAAGLTLIGPTPEAMEIMGNKLSAKAAALKYQIPMVPGTEE 135

Query: 114 NRFTMDSQH----LISPPYVIKPLKGGSSLGIIVIKK----DQSIPLDLLQSSSWNHGDQ 165
               ++        +  P +IK   GG   G+ +++K    ++ + L + ++ S      
Sbjct: 136 AITDVEEAKRRAIEVGFPILIKAAAGGGGKGMRIVEKAAEFEEQMQLAVSEALSAFGDGS 195

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+YV     +   V+GD   ++  +   +        K      + +    +  +I 
Sbjct: 196 VFIERYVSSPRHIEIQVLGDTHGNIVHLFERECSVQRRHQKVIEEAPSSI----LTAEIR 251

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +++ + A    +++   G    +F+ D  +   F+LE+N 
Sbjct: 252 EKMGKCAVDVARSVNYVGAGTVEFILDE-NLDFFFLEMNT 290


>gi|50954778|ref|YP_062066.1| carbamoylphosphate synthase, large chain [Leifsonia xyli subsp.
           xyli str. CTCB07]
 gi|50951260|gb|AAT88961.1| carbamoylphosphate synthase, large chain [Leifsonia xyli subsp.
           xyli str. CTCB07]
          Length = 1093

 Score = 65.9 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 49/278 (17%), Positives = 95/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG      L + G +V  +         D D              +  ++A  KP+    
Sbjct: 29  SGTQACRVLREEGVRVILVNSNPATIMTDPDFADATYVEPITWEVIETIIAKEKPEAILP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G    +  +Q     +LE   +    +   A     D+   K +V + G  V  S +
Sbjct: 89  TLGGQTALNEAMQLHEHGVLEKYGVELIGAKFEAIQKGEDRQIFKDLVIAAGADVARSHI 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     +     +  P V++P      LG       + +   +      +   ++L+E+
Sbjct: 149 AHTVEEALAFADDLGYPLVVRPSFTMGGLGSGFAYTSEELRRIVGDGIHQSPTSEVLLEE 208

Query: 171 YVDG-IELTCGVMGDASL-DVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEV 227
            + G  E    +M D +   V   ++   D           +S  V PA  +    Y+++
Sbjct: 209 SILGWKEYELELMRDTADNTVVVCSIENVDPVGVHT----GDSITVAPALTLTDREYQKL 264

Query: 228 QRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
           + +     +A+G   G     F  DP   +V  +E+N 
Sbjct: 265 RDIGIDIIRAVGVDTGGCNIQFAVDPADGRVIVIEMNP 302



 Score = 41.6 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 30/200 (15%), Positives = 69/200 (34%), Gaps = 13/200 (6%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---SILVNRFTMDSQHLISPPY 128
           LE   +    +   A  L+ ++     ++ + G+ V P   + +     + +   I  P 
Sbjct: 651 LEEAGVRVLGTTPSAIDLAEERGLFADILENAGL-VAPRNGTAVDYASALHAAEQIGYPV 709

Query: 129 VIKPLKGGSSLGIIVIKKDQSIP---LDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGD 184
           +++P       G+ ++    S+      +           LL+++++ D IE+    + D
Sbjct: 710 LVRPSFVLGGRGMEIVYDSDSLASYFQRVAGQGIVGPAHPLLVDRFLDDAIEIDVDALFD 769

Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244
                    +   +       +S  +S  + P  +       V+       + IG RG+ 
Sbjct: 770 GERLYIGGVMEHIEEAGV---HSGDSSCTLPPITLGRREIDRVREATRKIAEGIGVRGLL 826

Query: 245 RSDFLFDPLSRKVFWLEINV 264
              F        ++ LE N 
Sbjct: 827 NVQFAIGA--GVLYVLEANP 844


>gi|134300074|ref|YP_001113570.1| carbamoyl phosphate synthase large subunit [Desulfotomaculum
           reducens MI-1]
 gi|134052774|gb|ABO50745.1| carbamoyl-phosphate synthase large subunit [Desulfotomaculum
           reducens MI-1]
          Length = 1079

 Score = 65.9 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 48/276 (17%), Positives = 100/276 (36%), Gaps = 32/276 (11%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+++  +         D              +S+  ++   +PD    
Sbjct: 29  SGTQACKALRNLGYQIVLVNSNPATIMTDPGIADATYVEPLNVKSLTEIIVKERPDAVLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G    +   +     IL    +      I A     D++  K+ +S  G+ +  S  
Sbjct: 89  NLGGQTALNLCSELNQSGILNQYGVKVIGVQIDAIERGEDRIAFKETMSRLGIEMPRSQA 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                        +  P VI+P       G  ++   + +     +  + +   Q+L+E+
Sbjct: 149 AYSVEEAEKIAQELGYPVVIRPAYTMGGTGGGLVYNVEELRTIANRGIASSMVGQILVEE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQ 228
            V G  EL   V+ D+   +  +   ++      +   + +S    P   I  ++ + +Q
Sbjct: 209 SVLGWEELELEVVRDSKNQMITVCFIEN---IDAVGVHTGDSFCAAPMLTISQELQQRLQ 265

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + ++   +AI   G +   F  DP + +V  +EIN 
Sbjct: 266 KYSYAVVEAIEVIGGTNVQFAHDPKTGRVVIIEINP 301



 Score = 65.9 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 28/196 (14%), Positives = 70/196 (35%), Gaps = 8/196 (4%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-ILVN-RFTMDSQHLISPPYV 129
           LE   +    +      L+ D+ R   ++   G+P+  S + VN    +D    I  P +
Sbjct: 646 LEQAGVKILGTSQETIDLAEDRDRFNSMMQKLGIPMPESGMAVNIEEAIDISKKIGYPLM 705

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P       G+ ++  +  +   +  +        +L+++++   IE     + D    
Sbjct: 706 VRPSYVLGGRGMEIVHDEDMLRRYMAAAVGVTPERPILVDRFLGHAIEAEADAISDGKDA 765

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                +   +   Y   +S  ++  + P  I  +    +        + +   G+   + 
Sbjct: 766 FVPTVMEHIE---YAGVHSGDSACVIPPVSISEEHLNTIVDYTKKIAKEMQVVGL--MNM 820

Query: 249 LFDPLSRKVFWLEINV 264
            +     +V+ LE N 
Sbjct: 821 QYAIADDRVYVLEANP 836


>gi|307729075|ref|YP_003906299.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia sp.
           CCGE1003]
 gi|307583610|gb|ADN57008.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia sp.
           CCGE1003]
          Length = 407

 Score = 65.9 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 45/274 (16%), Positives = 92/274 (33%), Gaps = 32/274 (11%)

Query: 19  GKACASALEDAGFKVSQID----------------VDRSVGLVLAHL----KPDLAFNVL 58
           GK    AL+  G +V  +D                +D +    L  L    +P L    +
Sbjct: 27  GKEVIIALQRLGVEVIAVDRYPDAPGHQVAHRSHVIDMTDRAALRALVEAERPHLIVPEI 86

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKM-RSKQVVSSCGVPVCPSILVNRFT 117
                 D L  A +E   I        A+ L+M++    +      G+P  P    +   
Sbjct: 87  EAI-ATDAL--AAIESDGIAEVIPTARATQLTMNREGIRRLAAEELGLPTSPYAFADSLE 143

Query: 118 MDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH--GDQLLIEQYVD 173
                   +  P V+KP+   S  G  V++ D  +      + +       ++++E ++D
Sbjct: 144 ELRAGIAKVGYPCVVKPVMSSSGKGQSVLRSDADVEPAWQYAMAGGRVNHGRVIVEGFID 203

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAF 232
             E     +   ++D +   V             + +      P  +     +  + +A 
Sbjct: 204 -FEYEITQLTVRAIDPSTGEVATYFCDPIGHVQVAGDYVESWQPQPMSPLALERSREVAH 262

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
               A+G RG+   +         V++ E++ +P
Sbjct: 263 KVTAALGGRGLFGVELFVR--GDDVWFSEVSPRP 294


>gi|227832383|ref|YP_002834090.1| acyl-CoA carboxylase, alpha subunit [Corynebacterium aurimucosum
           ATCC 700975]
 gi|262183758|ref|ZP_06043179.1| acyl-CoA carboxylase, alpha subunit [Corynebacterium aurimucosum
           ATCC 700975]
 gi|227453399|gb|ACP32152.1| acyl-CoA carboxylase, alpha subunit [Corynebacterium aurimucosum
           ATCC 700975]
          Length = 590

 Score = 65.9 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 35/222 (15%), Positives = 73/222 (32%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLV-QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            +H  +G   E+    QA+++   + +      + A   DK+ ++ +      P+ P   
Sbjct: 83  AIHPGYGFLSENADFAQAVID-AGLTWIGPSPKSIADLGDKVTARHIAERADAPMAPGTK 141

Query: 113 VNRFTMDSQHLI----SPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGD 164
               + D           P  IK   GG   G+ V    + I         ++ +     
Sbjct: 142 DPVASADEVEAFADEHGLPVAIKAAFGGGGRGMKVAHTREEIKDLYESATREAVTAFGRG 201

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
           +  +E+Y+D    +   V+ D   +V  +           L+          PA  +  +
Sbjct: 202 ECFVERYLDKARHVEAQVLADQHGNVVVMGT-----RDCSLQRRFQKLVEEAPAPFLTDE 256

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
               +   A    +  G  G    ++L       + +LE+N 
Sbjct: 257 QRASIHESAKRICREAGYYGAGTVEYLV-GADGLISFLEVNT 297


>gi|227505429|ref|ZP_03935478.1| acyl-CoA carboxylase, alpha subunit [Corynebacterium striatum ATCC
           6940]
 gi|227197972|gb|EEI78020.1| acyl-CoA carboxylase, alpha subunit [Corynebacterium striatum ATCC
           6940]
          Length = 584

 Score = 65.9 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 33/221 (14%), Positives = 74/221 (33%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+      +    + +      +  L  DK+ +++V    G P+ P    
Sbjct: 77  AIHPGYGFLSENADFARAVAGAGLTWIGPTPESIELLGDKIAARRVAEEVGAPLAPGTSD 136

Query: 114 NRFTMDSQHLI----SPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGD 164
                            P  IK   GG   G+ V++  + I             ++    
Sbjct: 137 PIDDWQEARAFAEKHGLPIAIKAAYGGGGRGLKVVENLEDIEAAFNSAGREAKEAFGRA- 195

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           +  +E+++     +   ++ D   +V   AV  +   S + ++  L      PA +  + 
Sbjct: 196 ECYVEKFLTHPRHVEAQILADTHGNV---AVLGTRDCSTQRRFQKLIEEAPAPA-LSDEQ 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              +   A      +G  G    +++       + +LE+N 
Sbjct: 252 RTGIHEGARAICAKVGYTGAGTVEYIVSE-DGTISFLEVNT 291


>gi|89095225|ref|ZP_01168148.1| carbamoyl-phosphate synthase, large subunit [Oceanospirillum sp.
           MED92]
 gi|89080522|gb|EAR59771.1| carbamoyl-phosphate synthase, large subunit [Oceanospirillum sp.
           MED92]
          Length = 1069

 Score = 65.9 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 26/196 (13%), Positives = 74/196 (37%), Gaps = 8/196 (4%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           LE   +P   +   A   + D+ + +Q++   G+    +  V      +     +  P V
Sbjct: 653 LEQAGVPIIGTSPEAIDRAEDREQFQQMLKRLGLKQPENATVRSLEEAIIEADKLGYPLV 712

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           ++P        + ++ K++ +   +  +   ++   +L++ ++        V  DA  D 
Sbjct: 713 VRPSYVLGGRAMEIVYKEEELRRYMTTAVQVSNDAPVLLDHFL---NAAVEVDIDAVCDG 769

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
            ++ +     +  +    S +S    P   +  D+  E++ +       +G  G+   + 
Sbjct: 770 KDVVIGAIMQHIEQAGVHSGDSACSFPPYSLAADVQDEMREMVRKMALELGVVGL--MNT 827

Query: 249 LFDPLSRKVFWLEINV 264
                  +++ +E+N 
Sbjct: 828 QLAYQDGEIYVIEVNP 843



 Score = 65.1 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 100/278 (35%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D              ++V  ++A  KPD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPAMADSTYIEPINWKTVEKIIAKEKPDALLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +    + +LE   +    +       + D+ R  + + + G+    + +
Sbjct: 89  TMGGQTALNCALDLEREGVLEKHGVEMIGANADTIDKAEDRDRFDKAMKNIGLECPRAAI 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     +  Q  +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHSMEEALQVQAQLGFPCIIRPSFTMGGTGGGIAYNKEEFIEICERGLDLSPTTELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + +   +   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCAIEN----FDAMGVHTGDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P   ++  +E+N 
Sbjct: 265 RNASLAVLREIGVETGGSNVQFGVNPKDGRMVVIEMNP 302


>gi|114562469|ref|YP_749982.1| RimK domain-containing protein ATP-grasp [Shewanella frigidimarina
           NCIMB 400]
 gi|114333762|gb|ABI71144.1| RimK domain protein ATP-grasp [Shewanella frigidimarina NCIMB 400]
          Length = 483

 Score = 65.9 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 30/189 (15%), Positives = 66/189 (34%), Gaps = 10/189 (5%)

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH----LISPPYVIKPLKGGSS 138
              +     +K+   ++++   VPV  S++      +        I  P V+K   G  S
Sbjct: 268 DPESIMKCTNKVFLTELLNKHKVPVPKSLIFKASDKNWADNVIDTIGLPIVLKVPDGAFS 327

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVMGDASLDVTEIAVPKS 197
           LG++ +K  +++         + H   +L + +     +   GV+    +      + + 
Sbjct: 328 LGVVKVKDRETLLEQAAI--IFEHSALILAQAFMPTDYDWRIGVLNRQPIYACRYFMSRG 385

Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
            +  Y+   S   S+          + + +   A  A   IG       D     +  K 
Sbjct: 386 HWQIYQHHQSGRVSSGDFDCIDLKMVPQNIVDAAVKASNLIGAGLYG-VD--LKEIDGKA 442

Query: 258 FWLEINVQP 266
           + +E+N  P
Sbjct: 443 YVIEVNDNP 451


>gi|320534344|ref|ZP_08034831.1| carbamoyl-phosphate synthase, large subunit [Actinomyces sp. oral
           taxon 171 str. F0337]
 gi|320133426|gb|EFW25887.1| carbamoyl-phosphate synthase, large subunit [Actinomyces sp. oral
           taxon 171 str. F0337]
          Length = 1113

 Score = 65.9 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 49/278 (17%), Positives = 97/278 (34%), Gaps = 34/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG      L   G +V  +         D D              +  ++A  +PD    
Sbjct: 29  SGTQACRVLRAEGIRVILVNSNPATIMTDPDIADATYIEPITPEVLTTIIAKERPDALLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111
            L G    +  +    + +LE  ++    +   A     D+   K VV  CG  V  S+ 
Sbjct: 89  TLGGQTALNAAMSLVERGVLEEYDVELIGASAAAINAGEDRDEFKDVVERCGAEVARSVI 148

Query: 112 --LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
              ++        L   P V++P      LG  V   D  +        + +   ++L+E
Sbjct: 149 AHTMDECRAGVDALGGYPVVVRPSFTMGGLGSGVAFNDADLHRIAGAGLAASRTTEVLLE 208

Query: 170 QYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEV 227
           + + G  E    +M D + +V  +   ++      +   + +S  V PA  +     + +
Sbjct: 209 ESILGWKEYELELMRDTADNVVVVCSIENVD---PVGVHTGDSITVAPALTLTDRELQRL 265

Query: 228 QRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
           + +     + +G   G     F  DP + ++  +E+N 
Sbjct: 266 RDIGIAVIREVGVDTGGCNIQFAVDPATGRIIVIEMNP 303


>gi|152978322|ref|YP_001343951.1| acetyl-CoA carboxylase biotin carboxylase subunit [Actinobacillus
           succinogenes 130Z]
 gi|150840045|gb|ABR74016.1| acetyl-CoA carboxylase, biotin carboxylase [Actinobacillus
           succinogenes 130Z]
          Length = 448

 Score = 65.9 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 39/222 (17%), Positives = 82/222 (36%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+      +E     +         L  DK+ +   +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAEQVERSGFTFIGPTADVIRLMGDKVSAINAMKKAGVPCVPGSDG 136

Query: 112 ---LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGD 164
                     +  + I  P +IK   GG   G+ V++ + S+   +     ++ +  + D
Sbjct: 137 PLGTDMAKNKEIANRIGFPVIIKASGGGGGRGMRVVRDENSLEESIAMTKAEAKAAFNND 196

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
            + +E+Y++    +   V+ D   +   +A           K          PA  I  +
Sbjct: 197 MVYMEKYLENPRHVEIQVIADTHGNAVYLAERDCSMQRRHQK-----VVEEAPAPGITEE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +++      A   IG RG    +FL+   + + +++E+N 
Sbjct: 252 VRRDIGSRCANACVEIGYRGAGTFEFLY--ENGEFYFIEMNT 291


>gi|221484530|gb|EEE22824.1| hypothetical protein TGGT1_036120 [Toxoplasma gondii GT1]
          Length = 1253

 Score = 65.9 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 33/220 (15%), Positives = 77/220 (35%), Gaps = 20/220 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+    A +E   +           L  DK+ ++ +     V   P    
Sbjct: 148 AIHPGYGFLSENAEFAAAVENAGLMLVGPPPEVIRLMGDKVEARSIAERANVQAVPGTNE 207

Query: 112 LVNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
            V  F   +     I  P ++K   GG   G+  + +++ +         ++ +      
Sbjct: 208 PVTDFEEAAAFCRQIGFPVMLKAAYGGGGRGMRRVFREEELKEAFERATSEAQAAFGNGA 267

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           + +E+ V +G+ +   +MGD   +V              ++        + PA  +   +
Sbjct: 268 MFVEKLVQNGVHIEVQIMGDHFGNVV-----HLHERDCTVQRRHQKVVEIAPAPFLSPAL 322

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            + +   A    + +  +     +FL      + F++E+N
Sbjct: 323 RERILSDAVRLARFVSYQNAGTVEFLV--EGDRHFFIEVN 360


>gi|150400162|ref|YP_001323929.1| RimK domain-containing protein [Methanococcus vannielii SB]
 gi|150012865|gb|ABR55317.1| RimK domain protein ATP-grasp [Methanococcus vannielii SB]
          Length = 316

 Score = 65.9 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 34/218 (15%), Positives = 83/218 (38%), Gaps = 20/218 (9%)

Query: 71  ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------I 124
           + EL  +        +  +  DK+     +   G+ +  +I + +  ++  +       +
Sbjct: 71  MAELHGVKVI-DDSKSIRICADKINMYSHMIKNGINIPKTIFMKKSEVNEGNAEKIISEL 129

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQL-LIEQYV-DGIELTCGVM 182
             P V+K     S+   + ++K  S+   +  ++ +     + ++++++    +   GV+
Sbjct: 130 GLPLVLK---EPSTSFSVRVEKITSLEEFMKVANRFTRLSDIFVVQEFIGSKFDWRIGVI 186

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP-LDIYKEVQRLAFLAHQAIGCR 241
               +   +  +PK  F   +      +        IP  ++ K+V  L   A  A+G  
Sbjct: 187 NGEIIYTCKYHLPKESFKIQDC--IDGHMVFCTVESIPLDEVPKKVLELGLKAANAVGNG 244

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGM--TPVSIFPEM 277
                D      + +V+ +E+N  P M  T    +PE 
Sbjct: 245 LYG-ID--LKERNGEVYVIEVNDNPSMETTEDEFYPEA 279


>gi|153213941|ref|ZP_01949137.1| hypothetical protein A55_2570 [Vibrio cholerae 1587]
 gi|153828242|ref|ZP_01980909.1| hypothetical protein A59_2403 [Vibrio cholerae 623-39]
 gi|254286007|ref|ZP_04960968.1| hypothetical protein A33_2277 [Vibrio cholerae AM-19226]
 gi|124115594|gb|EAY34414.1| hypothetical protein A55_2570 [Vibrio cholerae 1587]
 gi|148876331|gb|EDL74466.1| hypothetical protein A59_2403 [Vibrio cholerae 623-39]
 gi|150423917|gb|EDN15857.1| hypothetical protein A33_2277 [Vibrio cholerae AM-19226]
          Length = 483

 Score = 65.9 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 29/182 (15%), Positives = 69/182 (37%), Gaps = 10/182 (5%)

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIK 145
             +K+   +++ +  VP   S+++  F  + +      +  P V+K   G  S G++ ++
Sbjct: 275 CTNKVFLTELLETNKVPAPKSVIIRSFDPEWKTGLMEQLDFPMVLKIPDGAFSRGVVKVR 334

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYEL 204
            +Q +  +      +     +L + +     +   GVM   ++   +  + +  +  Y+ 
Sbjct: 335 NEQELEKEAGI--LFEKSALILAQAFMPTDFDWRIGVMNRQAIFACKYMMSRGHWQIYQH 392

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             S   +           + K V  +A  A   IG       D     +  +V+ +E+N 
Sbjct: 393 HNSGRVTAGGFETLDLKQVPKHVVDVAVKAANLIGGGLYG-VD--LKEIDGQVYVIEVND 449

Query: 265 QP 266
            P
Sbjct: 450 NP 451


>gi|89900108|ref|YP_522579.1| cyanophycin synthetase [Rhodoferax ferrireducens T118]
 gi|89344845|gb|ABD69048.1| Cyanophycin synthetase [Rhodoferax ferrireducens T118]
          Length = 858

 Score = 65.9 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 28/117 (23%), Positives = 55/117 (47%), Gaps = 5/117 (4%)

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLG 140
           G +A A++ DK  +K+++++ GVPV     V+       +   +  P V+KP  G    G
Sbjct: 195 GAIAEAIAQDKQLTKKLLAAAGVPVPLGREVDTPEDAWMAACEVGLPVVVKPKSGNQGKG 254

Query: 141 IIV-IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK 196
           + V I   + +      ++ +  GD +L+E+Y+ G +    V+G+  +       P 
Sbjct: 255 VTVNITSREQLTAAYAAAAEF--GDDILVERYIPGNDFRLLVVGNKLVAAAYREPPN 309


>gi|326795469|ref|YP_004313289.1| methylcrotonoyl-CoA carboxylase [Marinomonas mediterranea MMB-1]
 gi|326546233|gb|ADZ91453.1| Methylcrotonoyl-CoA carboxylase [Marinomonas mediterranea MMB-1]
          Length = 673

 Score = 65.9 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 36/223 (16%), Positives = 78/223 (34%), Gaps = 23/223 (10%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+       +   + +    + A      K  +K ++    VP+ P    
Sbjct: 77  AIHPGYGFLSENADFCRACQDNNLVFIGPPVGAIEAMGSKSAAKDIMGKADVPLVPGY-- 134

Query: 114 NRFTMDSQ------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----G 163
           +    D +        +  P ++K   GG   G+  + + +     L  +          
Sbjct: 135 HGADQDPELLRASSEQMGYPVLLKAAAGGGGKGMRQVWQAEDFDEALAAAKREAMNGFGD 194

Query: 164 DQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPL 221
           D +L+E+Y+ +   +   V  D   +   +           L+          PA  +  
Sbjct: 195 DTMLVEKYLTEPRHVEIQVFCDQHHNAVYL-----FERDCSLQRRHQKVIEEAPAPGMSD 249

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +++   A  A QAI  +G    +FL D    + +++E+N 
Sbjct: 250 SLRQQMGEAAVRAAQAIDYQGAGTVEFLLD-HDGRFYFMEMNT 291


>gi|322833216|ref|YP_004213243.1| alpha-L-glutamate ligase, RimK family [Rahnella sp. Y9602]
 gi|321168417|gb|ADW74116.1| alpha-L-glutamate ligase, RimK family [Rahnella sp. Y9602]
          Length = 300

 Score = 65.9 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 56/291 (19%), Positives = 108/291 (37%), Gaps = 49/291 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------DRSVGLVLAHL-- 49
           +A+L       R+ SL S K    A E  G ++  ID                   H   
Sbjct: 3   IAILS------RDGSLYSCKRLKEAAEARGHEIDIIDPLSCYMNINPAAPSVHYRGHQLD 56

Query: 50  KPDLAFN------VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103
           K              +G       V    E+L   +  +  +A   + DK+RS Q+++  
Sbjct: 57  KYHAVIPRIGSAITFYGT-----AVLRQFEMLG-SFPLNESVAITRARDKLRSMQILARE 110

Query: 104 GV--PVCPSILVNRFTMDSQHLISP-PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160
           G+  P          T D   L+   P V+K ++G   +G+++ +  Q+     +  +  
Sbjct: 111 GIDLPTTGFANAPDDTADLIALVGGAPLVVKLVEGTQGIGVVLAETRQAAES--VIDAFR 168

Query: 161 NHGDQLLIEQYV---DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
                +L+++Y+   +G ++ C V+G   +   E      DF S   +  +  +  + P 
Sbjct: 169 GLNAHILVQEYIREAEGRDIRCLVVGKKVVGAIERQAKPGDFRSNLHRGGTATNVKITPQ 228

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268
           +         + +A  A Q +G   ++  D      +R    +E+N  PG+
Sbjct: 229 E---------KDIAVKAAQTLGL-DVAGVD--ILRSNRGPLVMEVNASPGL 267


>gi|227819398|ref|YP_002823369.1| 3-methylcrotonoyl-CoA carboxylase subunit alpha [Sinorhizobium
           fredii NGR234]
 gi|227338397|gb|ACP22616.1| 3-methylcrotonoyl-CoA carboxylase, alpha subunit [Sinorhizobium
           fredii NGR234]
          Length = 662

 Score = 65.9 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 78/225 (34%), Gaps = 22/225 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+    A +E   + +      A      K  +K ++   GVPV P    
Sbjct: 77  AIHPGYGFLSENADFAAAVEAANMVFVGPSPNAIRAMGLKDAAKALMERSGVPVVPGYHG 136

Query: 114 NRFT----MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
                         I  P +IK   GG   G+  +++ +     L  +            
Sbjct: 137 EEQEAGFLAAQAAEIGYPVLIKARAGGGGKGMRRVERPEDFAPALEAARREAEAAFGDGS 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           +LIE+Y+     +   V GD   ++              L+          PA  +  ++
Sbjct: 197 VLIERYLTRPRHIEVQVFGDRHGNIV-----HLFERDCSLQRRHQKVIEEAPAPGMTAEV 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR----KVFWLEINV 264
            + +   A  A +AIG  G    +F+ D  +     + F++E+N 
Sbjct: 252 RRAMGDAAVRAARAIGYAGAGTVEFIADVTNGLWPDQFFFMEMNT 296


>gi|224005499|ref|XP_002291710.1| hypothetical protein THAPSDRAFT_14727 [Thalassiosira pseudonana
           CCMP1335]
 gi|220972229|gb|EED90561.1| hypothetical protein THAPSDRAFT_14727 [Thalassiosira pseudonana
           CCMP1335]
          Length = 447

 Score = 65.9 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 35/245 (14%), Positives = 79/245 (32%), Gaps = 22/245 (8%)

Query: 35  QIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKM 94
            +DV + +  V      D      +G   E       L    I +         L  DK+
Sbjct: 57  YLDV-KGLTGVAVERGVDFVHPG-YGFLSESAPFAQSLLSSNIEWVGPPPSVLELFGDKI 114

Query: 95  RSKQVVSSCGVPVCPSILVNRFTMDSQHLI-----SPPYVIKPLKGGSSLGIIVIKKDQS 149
           +++ +    GVPV       +   +   ++       P ++K   GG   G+ +++    
Sbjct: 115 QARALAQESGVPVVRGSGNLKSGEECLEILERGDFGLPAIMKAAYGGGGRGMRIVRSIND 174

Query: 150 IPL-----DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYEL 204
           +            +++   +  L E + D   L   ++ D    V  +           +
Sbjct: 175 VLPSFSSCQREALTAFGRNEVFLEEFWEDTQHLEVQILADGHGGVVHLYE-----RDCTV 229

Query: 205 KYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL----SRKVFW 259
           ++       + PA  I  ++ + +   A    +    +G    +FL          +  +
Sbjct: 230 QHRHQKVIELAPARDIHPELRQRLVECAVTLAKECNYKGAGTVEFLVRGDLSSADAEFVF 289

Query: 260 LEINV 264
           +E+N 
Sbjct: 290 MEVNP 294


>gi|153825979|ref|ZP_01978646.1| hypothetical protein A5A_2512 [Vibrio cholerae MZO-2]
 gi|149740296|gb|EDM54437.1| hypothetical protein A5A_2512 [Vibrio cholerae MZO-2]
          Length = 483

 Score = 65.9 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 29/182 (15%), Positives = 70/182 (38%), Gaps = 10/182 (5%)

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIK 145
             +K+   +++ +  VP   S+++  F  + +      +  P V+K   G  S G++ ++
Sbjct: 275 CTNKVFLTELLETNKVPAPKSVIIRSFDPEWKTGLMEQLDFPMVLKIPDGAFSRGVVKVR 334

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYEL 204
            +Q +  +    + +     +L + +     +   GVM   ++   +  + +  +  Y+ 
Sbjct: 335 NEQELEKEA--GTLFEKSALILAQAFMPTDFDWRIGVMNRQAIFACKYMMSRGHWQIYQH 392

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             S   +           + K V  +A  A   IG       D     +  +V+ +E+N 
Sbjct: 393 HNSGRVTAGGFETLDLKQVPKHVVDVAVKAANLIGGGLYG-VD--LKEIDGQVYVIEVND 449

Query: 265 QP 266
            P
Sbjct: 450 NP 451


>gi|145604521|ref|XP_367852.2| hypothetical protein MGG_07756 [Magnaporthe oryzae 70-15]
 gi|145012527|gb|EDJ97181.1| hypothetical protein MGG_07756 [Magnaporthe oryzae 70-15]
          Length = 1188

 Score = 65.9 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 36/216 (16%), Positives = 84/216 (38%), Gaps = 16/216 (7%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI--LVNRF 116
           +G   E+      +E   + +            DK+ ++++  +  VPV P     V ++
Sbjct: 134 YGFLSENAEFAKKVEDSGLIFVGPSPDVIQALGDKVSARKLAIAANVPVVPGTEGAVEKY 193

Query: 117 TMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGDQLLIEQ 170
               +       P +IK   GG   G+ V++  +S+         ++ S      + +E+
Sbjct: 194 EEVKKFTDEYGFPIIIKAAYGGGGRGMRVVRDQESLKESFERATSEAKSAFGNGTVFVER 253

Query: 171 YVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQ 228
           ++D    +   ++GD   ++  +           ++        + PA  +P +    + 
Sbjct: 254 FLDKPKHIEVQLLGDNQGNIVHLYE-----RDCSVQRRHQKVVEIAPAKDLPPETRDAIL 308

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + A    Q++  R    ++FL D  +R  +++EIN 
Sbjct: 309 KDAVRLAQSVNYRNAGTAEFLVDQQNR-YYFIEINP 343


>gi|221068678|ref|ZP_03544783.1| phosphoribosylglycinamide formyltransferase 2 [Comamonas
           testosteroni KF-1]
 gi|220713701|gb|EED69069.1| phosphoribosylglycinamide formyltransferase 2 [Comamonas
           testosteroni KF-1]
          Length = 405

 Score = 65.9 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 47/286 (16%), Positives = 90/286 (31%), Gaps = 51/286 (17%)

Query: 19  GKACASALEDAGFKVSQID----------------VDRSVGLVLAHL----KPDLAFNVL 58
           GK    AL+  G +   +D                +  S    L  L    KPDL    +
Sbjct: 24  GKEVLIALQRLGVETIAVDRYENAPGQQVAHHARTITMSDPAQLKALIEEVKPDLVVPEI 83

Query: 59  HG---NFGEDGLVQAILELLEIPYTHSGILASALSMDKM-RSKQVVSSCGVPVCPSILVN 114
                   E+      LE   +        A+ L+MD+    +    + G+P  P    +
Sbjct: 84  EAIATPMLEE------LEAAGVITCIPTARAARLTMDREGIRRLAAETLGLPTSPYRFCD 137

Query: 115 RFTM--------DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH--GD 164
                       D Q  I  P V+KP+   S  G   I     +      + +       
Sbjct: 138 SLAELQAAIDGSDGQPAIGYPCVVKPVMSSSGKGQSKIDGPADVAKAWDYAMAGGRVAKG 197

Query: 165 QLLIEQYVD----GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
           ++++E ++D      +LT    G  +   T    P           +        P  + 
Sbjct: 198 RVIVEGFIDFDYEITQLTVRAKGADAQIETHFCDPVGHIQ-----QAGDYVESWQPHPMH 252

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
               ++ +++A      +G  G+   +        +V++ E++ +P
Sbjct: 253 PAALEKSRQIAKAVTDDLGGLGLFGVELFV--KGEQVWFSEVSPRP 296


>gi|261211440|ref|ZP_05925728.1| glutathione synthase/Ribosomal protein S6 modification enzyme
           (glutaminyl transferase) [Vibrio sp. RC341]
 gi|262404657|ref|ZP_06081212.1| glutathione synthase/Ribosomal protein S6 modification enzyme
           (glutaminyl transferase) [Vibrio sp. RC586]
 gi|260839395|gb|EEX66021.1| glutathione synthase/Ribosomal protein S6 modification enzyme
           (glutaminyl transferase) [Vibrio sp. RC341]
 gi|262349689|gb|EEY98827.1| glutathione synthase/Ribosomal protein S6 modification enzyme
           (glutaminyl transferase) [Vibrio sp. RC586]
          Length = 483

 Score = 65.9 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 29/182 (15%), Positives = 70/182 (38%), Gaps = 10/182 (5%)

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIK 145
             +K+   +++ +  VP   S+++  F  + +      +  P V+K   G  S G++ ++
Sbjct: 275 CTNKVFLTELLETNKVPAPKSVIIRSFDPEWKTGLMEQLDFPMVLKIPDGAFSRGVVKVR 334

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYEL 204
            +Q +  +    + +     +L + +     +   GVM   ++   +  + +  +  Y+ 
Sbjct: 335 NEQELEQEA--GTLFEKSALILAQAFMPTDFDWRIGVMNRQAIFACKYMMSRGHWQIYQH 392

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             S   +           + K V  +A  A   IG       D     +  +V+ +E+N 
Sbjct: 393 HNSGRVTAGGFETLDLKQVPKNVVDVAVKASNLIGGGLYG-VD--LKEIDGQVYVIEVND 449

Query: 265 QP 266
            P
Sbjct: 450 NP 451


>gi|170723323|ref|YP_001751011.1| phosphoribosylglycinamide formyltransferase 2 [Pseudomonas putida
           W619]
 gi|254788778|sp|B1JDF0|PURT_PSEPW RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|169761326|gb|ACA74642.1| phosphoribosylglycinamide formyltransferase 2 [Pseudomonas putida
           W619]
          Length = 393

 Score = 65.9 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 47/280 (16%), Positives = 98/280 (35%), Gaps = 51/280 (18%)

Query: 19  GKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIP 78
           GK     L+  G +V  +D   +   +    +  +  N+L G       ++A++E  +  
Sbjct: 24  GKEVVIELQRLGVEVIAVDRYANAPAMQVAHRSHVV-NMLDGV-----ALRAVIEAEKPH 77

Query: 79  YTHSGILASA----------------------LSMDKM-RSKQVVSSCGVPVCPSILVNR 115
           Y    I A A                      L+M++    +       +P  P    + 
Sbjct: 78  YIVPEIEAIATATLVELENEGFNVVPTARATQLTMNREGIRRLAAEELDLPTSPYHFADT 137

Query: 116 FTMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPL--DLLQSSSWNHGDQLLIEQY 171
           F   ++ +  +  P V+KP+   S  G  +++ D  +    D  Q        +++IE +
Sbjct: 138 FEDYAKAVADVGYPCVVKPVMSSSGKGQSLLRSDADLQKSWDYAQEGGRAGKGRVIIEGF 197

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSY----ELKYSSLNSTHVL-PAKIPLDIYKE 226
           +           D   ++T + V      +Y      +    +      P  +      E
Sbjct: 198 I-----------DFDYEITLLTVRHVGGTTYLEPVGHRQEKGDYQESWQPQAMSPKALAE 246

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
            QR+A     A+G RG+   +        +V++ E++ +P
Sbjct: 247 SQRVAKAVTDALGGRGLFGVELFV--KGDQVWFSEVSPRP 284


>gi|92117652|ref|YP_577381.1| carbamoyl-phosphate synthase L chain, ATP-binding [Nitrobacter
           hamburgensis X14]
 gi|91800546|gb|ABE62921.1| Carbamoyl-phosphate synthase L chain, ATP-binding protein
           [Nitrobacter hamburgensis X14]
          Length = 666

 Score = 65.9 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 36/219 (16%), Positives = 77/219 (35%), Gaps = 18/219 (8%)

Query: 58  LHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
           +H  +G   E+          ++ +             K  +K ++   GVP+       
Sbjct: 86  IHPGYGFLSENAAFAQACADADLVFVGPTAAMMTAMGSKSCAKALMEKAGVPLVAGYHGE 145

Query: 115 RFT----MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQL 166
                    +   I  P ++K   GG   G+ +++    +   ++    ++ +    D++
Sbjct: 146 AQDDATLQGAADRIGYPVLVKASAGGGGRGMRIVRSAAELAPAVVSARREAKAAFGDDRM 205

Query: 167 LIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
           LIE+YVD    +   V+GD+  ++  +   +        K             +     +
Sbjct: 206 LIEKYVDNPRHIEVQVIGDSHGNLLSLFERECTLQRRHQK----VIEEAPSPTLDAAGRE 261

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            V   A  A  A+   G    +F+ D     VF++E+N 
Sbjct: 262 AVCAAARKAAGAVNYVGAGTVEFVSDGKD--VFFIEMNT 298


>gi|227830471|ref|YP_002832251.1| carbamoyl phosphate synthase large subunit [Sulfolobus islandicus
           L.S.2.15]
 gi|229579283|ref|YP_002837681.1| carbamoyl phosphate synthase large subunit [Sulfolobus islandicus
           Y.G.57.14]
 gi|259585687|sp|C3MQE3|CARB_SULIL RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|259585690|sp|C3NEM0|CARB_SULIY RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|227456919|gb|ACP35606.1| carbamoyl-phosphate synthase, large subunit [Sulfolobus islandicus
           L.S.2.15]
 gi|228009997|gb|ACP45759.1| carbamoyl-phosphate synthase, large subunit [Sulfolobus islandicus
           Y.G.57.14]
          Length = 1051

 Score = 65.9 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 52/299 (17%), Positives = 112/299 (37%), Gaps = 38/299 (12%)

Query: 18  SGKACASALEDAGFKVSQI------------DVDR---------SVGLVLAHLKPDLAFN 56
           SG     AL++ G +   +              D+         +V  V+   +PD    
Sbjct: 27  SGSQALKALKEEGIETVLVNSNVATVQTSKKFADKLYMLPVVWWAVEKVIEKERPDGIMI 86

Query: 57  VLHG----NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
              G    N G D   + +L+   +    + I     ++ + + ++ +    +PV PS+ 
Sbjct: 87  GFGGQTALNVGVDLHKKGVLQKYGVKVLGTQIDGIEKALSREKFRETMIENNLPVPPSLS 146

Query: 113 VNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  + +  ++  P +++        G +V   ++ +  ++ ++ S ++  ++LIE+
Sbjct: 147 ARSEEEAIKNAKIVGYPVMVRVSFNLGGRGSMVAWTEEDLKKNIRRALSQSYIGEVLIEK 206

Query: 171 YV-DGIELTCGVMGDASLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
           Y+   IEL   VM D   + + IA  ++ D            ST V P + +    Y+ +
Sbjct: 207 YLYHWIELEYEVMRDKKGNSSVIACIENLDPMGVHT----GESTVVAPCQTLDNLEYQNM 262

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           +       ++I   G     F  +P   + + +E    P M+  S     +   GY   
Sbjct: 263 RTYTIEVARSINLIGECNVQFALNPRGYEYYIIE--TNPRMSRSS--ALASKATGYPLA 317



 Score = 57.4 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 39/316 (12%), Positives = 108/316 (34%), Gaps = 47/316 (14%)

Query: 7   GISSEREVSLSS-GKACASALED---AGFKVSQIDVDRSVGLVL--------------AH 48
           G+S E + S+ S  +A +   ++     +    +  D  +   L                
Sbjct: 567 GVSVEFDWSVVSLMEAASKYFDEVAVLNYNPETVSTDWDIARKLYFDEINVERVLDLIKK 626

Query: 49  LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
            K         G  G    +   LE   +    +   +  ++ ++ +  +++   G+   
Sbjct: 627 EKFRYVATFSGGQIGN--SIAKELEENGVRLLGTSGSSVDIAENREKFSKLLDKLGISQP 684

Query: 109 PSILVNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQL 166
             +         +  + +  P +++P    S   + +   ++ +   + +++  +    +
Sbjct: 685 NWVSATSLEEIKKFVNEVGFPVLVRPSYVLSGSSMKIAYSEEELYEYVRRATEISPKYPV 744

Query: 167 LIEQYVD-GIELTC-GV-MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
           +I +Y++  IE    GV  G+  L +T   V ++  +S        ++T  +P + +  +
Sbjct: 745 VISKYIENAIEAEVDGVSDGNRVLGITLEHVEEAGVHS-------GDATMSIPFRKLSEN 797

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN-----VQPGMTP----VSI 273
              +++       + +  +G     F+          +E+N       P  +     +++
Sbjct: 798 SVNKMRENVLSLARELNIKGPFNVQFVV--KDNTPHIIELNLRASRSMP-FSSKAKGINL 854

Query: 274 FPEMAAY--AGYSFRE 287
             E       G  F E
Sbjct: 855 INEAMKAIFNGLDFSE 870


>gi|225872350|ref|YP_002753805.1| carbamoyl-phosphate synthase, large subunit [Acidobacterium
           capsulatum ATCC 51196]
 gi|254813553|sp|C1F1S6|CARB_ACIC5 RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|225793736|gb|ACO33826.1| carbamoyl-phosphate synthase, large subunit [Acidobacterium
           capsulatum ATCC 51196]
          Length = 1093

 Score = 65.9 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 60/299 (20%), Positives = 110/299 (36%), Gaps = 48/299 (16%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQID------------VDRSVGLVLAHLKPDLA 54
           G S+E + S   G     AL+  G++V  ++             DR+    L     D  
Sbjct: 21  GQSAEFDYS---GTQACKALKAEGYEVVLVNSNPATIMTDPELADRTYIEPLTVKYLDEI 77

Query: 55  ------FNVLHGNFGEDGLVQ-----------------AILELLEIPYTHSGILASALSM 91
                      G+ G+  ++                   IL+   +    + + A   + 
Sbjct: 78  LRIEAEMLAASGSNGKFAVLPTVGGQTALNLAVELADAGILDKYGVELIGAKLDAIKKAE 137

Query: 92  DKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS 149
           D++  K  ++  G+ V  S LVN  R  ++    I  P +I+P       G  +    + 
Sbjct: 138 DRLLFKDAMTRIGLDVPRSALVNNIRDGLEFATKIGFPVIIRPSFTLGGSGGGIGYNREE 197

Query: 150 IPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKS-DFYSYELKYS 207
           +   L +    +   + LIE+ V G  E    VM D + +V  I   ++ D         
Sbjct: 198 LMEILARGLDLSPVHECLIEESVLGWKEYELEVMRDLADNVIIICSIENMDPMGVHT--- 254

Query: 208 SLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
             +S  V PA+ +    Y+ ++  A L  + IG   G S   F  +P + ++  +E+N 
Sbjct: 255 -GDSITVAPAQTLTDREYQAMRDAALLVMREIGVETGGSNVQFAVNPQTGRMTVIEMNP 312



 Score = 58.2 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 32/224 (14%), Positives = 83/224 (37%), Gaps = 12/224 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           L+   +    +   +  L+ D+    +++    +P             + S   I  P +
Sbjct: 664 LKQAGVKIIGTSPESIDLAEDRKSFGKLLEQLQIPQPQGATATSVEEALASAERIGYPVL 723

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           ++P        +++     ++   + ++  ++    +LI+ +++       V  DA  D 
Sbjct: 724 VRPSYVLGGRAMVIAYDAAAVSHYMKEAVEYSQERPILIDHFLE---DAVEVDVDALCDG 780

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           T++ +     +  E    S +S+ VLPA  +   +   ++        A+  + I   + 
Sbjct: 781 TDVVIAGIMQHIEEAGIHSGDSSCVLPAVDLAPQVLDTIRDYTRKL--ALSLKVIGLVNL 838

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
            F     KV+ +E+N +   T     P ++   G    ++   +
Sbjct: 839 QFAIQRDKVYVIEVNPRASRT----VPYVSKATGVPLAKIASRL 878


>gi|258620934|ref|ZP_05715968.1| Glutathione synthase/Ribosomal protein S6 modification enzyme
           [Vibrio mimicus VM573]
 gi|258623890|ref|ZP_05718844.1| Glutathione synthase/Ribosomal protein S6 modification enzyme
           [Vibrio mimicus VM603]
 gi|262170712|ref|ZP_06038390.1| ribosomal protein S6 glutaminyl transferase related protein [Vibrio
           mimicus MB-451]
 gi|297580965|ref|ZP_06942890.1| conserved hypothetical protein [Vibrio cholerae RC385]
 gi|258583879|gb|EEW08674.1| Glutathione synthase/Ribosomal protein S6 modification enzyme
           [Vibrio mimicus VM603]
 gi|258586322|gb|EEW11037.1| Glutathione synthase/Ribosomal protein S6 modification enzyme
           [Vibrio mimicus VM573]
 gi|261891788|gb|EEY37774.1| ribosomal protein S6 glutaminyl transferase related protein [Vibrio
           mimicus MB-451]
 gi|297534791|gb|EFH73627.1| conserved hypothetical protein [Vibrio cholerae RC385]
          Length = 483

 Score = 65.9 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 29/182 (15%), Positives = 70/182 (38%), Gaps = 10/182 (5%)

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIK 145
             +K+   +++ +  VP   S+++  F  + +      +  P V+K   G  S G++ ++
Sbjct: 275 CTNKVFLTELLETNKVPAPKSVIIRSFDPEWKTGLMEQLDFPMVLKIPDGAFSRGVVKVR 334

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYEL 204
            +Q +  +    + +     +L + +     +   GVM   ++   +  + +  +  Y+ 
Sbjct: 335 NEQELEKEA--GTLFEKSALILAQAFMPTDFDWRIGVMNRQAIFACKYMMSRGHWQIYQH 392

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             S   +           + K V  +A  A   IG       D     +  +V+ +E+N 
Sbjct: 393 HNSGRVTAGGFETLDLKQVPKNVVDVAVKAANLIGGGLYG-VD--LKEIDGQVYVIEVND 449

Query: 265 QP 266
            P
Sbjct: 450 NP 451


>gi|152967855|ref|YP_001363639.1| carbamoyl-phosphate synthase L chain ATP-binding [Kineococcus
           radiotolerans SRS30216]
 gi|151362372|gb|ABS05375.1| Carbamoyl-phosphate synthase L chain ATP-binding [Kineococcus
           radiotolerans SRS30216]
          Length = 634

 Score = 65.9 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 33/221 (14%), Positives = 75/221 (33%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLV-QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP----VC 108
            +H  +G   E+    QA+++   + +      A     DK+ ++ + +  G P      
Sbjct: 96  AVHPGYGFLSENAAFAQAVMD-AGLTWIGPPPAAIEALGDKVSARHLAARAGAPLVAGTP 154

Query: 109 PSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL----DLLQSSSWNHGD 164
             +      +        P  IK   GG   G+ V ++ + +       + ++ +     
Sbjct: 155 DPVSGPEEVLAFADEHGLPIAIKAAFGGGGRGLKVAREREKVAELFASAVREAEAAFGRG 214

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           +  +E+Y+D    +   V+ DA      ++           K             +  + 
Sbjct: 215 ECFVERYLDRPRHVETQVLADAHGGAVVVSTRDCSLQRRHQK----LVEEAPAPFLTPEQ 270

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             E++R +    +  G  G    +FL       + +LE+N 
Sbjct: 271 DAELRRASLAIVREAGYVGAGTVEFLV-AADGTLAFLEVNT 310


>gi|299782877|gb|ADJ40875.1| Acetyl-CoA carboxylase [Lactobacillus fermentum CECT 5716]
          Length = 420

 Score = 65.9 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 80/221 (36%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---- 109
            +H  FG   E+     + + + I +         L  +K  +++ +   GVPV P    
Sbjct: 32  AIHPGFGFLSENATFAQMCDAVGITFIGPKAATIDLMGNKEHAREQMQKAGVPVIPGSDG 91

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
            +   +  +   + I  P ++K   GG   GI  I++   +     ++ +        D+
Sbjct: 92  YVQDAQTALAVANKIGYPILLKAAAGGGGKGIRKIEQASDLEKAFSEAQAEARVSFNDDR 151

Query: 166 LLIEQYVDGI-ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDI 223
           + +E+ ++ +  +   V  D   +               L+ +        P  +   D 
Sbjct: 152 MYLEKIMENVKHIEVQVFRDRFGNAVYFPE-----RDCSLQRNKQKVIEESPCSLISEDK 206

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +E+  +A  A   I        +FL D   +  +++E+N 
Sbjct: 207 RRELGEIAVRAVNGIDYLNTGTLEFLMD-QDQNFYFMEMNT 246


>gi|295677143|ref|YP_003605667.1| carbamoyl-phosphate synthase, large subunit [Burkholderia sp.
           CCGE1002]
 gi|295436986|gb|ADG16156.1| carbamoyl-phosphate synthase, large subunit [Burkholderia sp.
           CCGE1002]
          Length = 1088

 Score = 65.9 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 26/207 (12%), Positives = 73/207 (35%), Gaps = 17/207 (8%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQHLISPPYV 129
           LE   +P   +       + D+ R ++++   G+   P+         +     I  P V
Sbjct: 655 LEANGVPIIGTSPDMIDAAEDRERFQKLLQDLGLRQPPNRTARTEDEALKLADEIGYPLV 714

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++ + + +   + ++   ++   +L+++++ D IE     + D    
Sbjct: 715 VRPSYVLGGRAMEIVHEPRDLERYMREAVKVSNDSPVLLDRFLNDAIECDVDCISDGDAV 774

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                +   +       +S  ++  + P  +  +   E++R      +A+   G+    F
Sbjct: 775 FIGGVMEHIEQAGV---HSGDSACSLPPYSLSKETVAELKRQTAAMAKALNVIGLMNVQF 831

Query: 249 LFD-----------PLSRKVFWLEINV 264
                              ++ LE+N 
Sbjct: 832 AIQQVPSATNAADGSKDDIIYVLEVNP 858



 Score = 62.1 bits (150), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 48/285 (16%), Positives = 93/285 (32%), Gaps = 42/285 (14%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +              DV          V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYKVILVNSNPATIMTDPNTADVTYIEPITWEVVERIIAKERPDAILP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G    +  +      +L    +    +   A   + D+ + K  ++  G+    S  
Sbjct: 89  TMGGQTALNCALDLHAHGVLAKYNVELIGASPEAIDKAEDRQKFKDAMTRIGLGSAKSGT 148

Query: 111 -------ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
                  + V             P VI+P       G  +            +    +  
Sbjct: 149 AHSMEEALAVQAKIAAETGSGGYPVVIRPSFTLGGSGGGIAYNRDEFEEICKRGLDLSPT 208

Query: 164 DQLLIEQYVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IP 220
            +LLIE+ + G  E    V+ D + + +   ++   D           +S  V PA+ + 
Sbjct: 209 RELLIEESLLGWKEYEMEVVRDKADNCIIVCSIENLDPMGIHT----GDSITVAPAQTLT 264

Query: 221 LDIYKEVQRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
              Y+ ++  +    + IG   G S   F  +P   ++  +E+N 
Sbjct: 265 DKEYQILRNASLAVLREIGVDTGGSNVQFSINPKDGRMIVIEMNP 309


>gi|257869872|ref|ZP_05649525.1| phosphoribosylaminoimidazole carboxylase [Enterococcus gallinarum
           EG2]
 gi|257804036|gb|EEV32858.1| phosphoribosylaminoimidazole carboxylase [Enterococcus gallinarum
           EG2]
          Length = 375

 Score = 65.9 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 37/204 (18%), Positives = 81/204 (39%), Gaps = 19/204 (9%)

Query: 67  LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTMDSQHLI 124
            + +IL    IP    G    A++ D++  K  + +  + + P   +       D+   I
Sbjct: 87  ALNSILPYANIPQ---GTDLLAITQDRLLEKSFLEANNIVIAPYATIISPTDIQDAIESI 143

Query: 125 SPPYVIKPLKGG-SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVM 182
             P V+K  +GG    G  V+     +   +             +E ++    EL+  V 
Sbjct: 144 GYPCVLKTTRGGYDGKGQYVLYSTADLAPSMNL----LREGTCELEAWIPYEKELSIMVA 199

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
           G+   ++T   V ++         +++    + PA+I  ++ +E +R+A +  QA+  RG
Sbjct: 200 GNGR-EITTFPVVENIHR------NNILHQTIAPARIDSEVAEEAERIARVIAQALDLRG 252

Query: 243 ISRSDFLFDPLSRKVFWLEINVQP 266
           +   +         ++  E+  +P
Sbjct: 253 VLAIELFLTKSGG-LYVNELAPRP 275


>gi|221121164|ref|XP_002162313.1| PREDICTED: similar to predicted protein [Hydra magnipapillata]
          Length = 696

 Score = 65.9 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 45/202 (22%), Positives = 75/202 (37%), Gaps = 14/202 (6%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI--LVNRFTMDSQ--HLISPP 127
           LE   I +      A     DK+ SK++     V + P    +V       +    I  P
Sbjct: 125 LENSGIIFIGPNKHALLAMGDKIESKKIGLKAKVNIIPGYDGVVEDVEKAIKLTKDIGYP 184

Query: 128 YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN----HGDQLLIEQYV-DGIELTCGVM 182
            ++K   GG   G+ V   D  +      SS       + D+LLIE++V D   +   VM
Sbjct: 185 VMLKASAGGGGKGMRVAYNDDEVRTGFRLSSQEAATSFNDDRLLIEKFVEDPRHIEIQVM 244

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
           GD   +V  +   +        K           + +  +  K +   A +  +A+G   
Sbjct: 245 GDNYGNVVYLNERECSIQRRNQK----VIEEAPSSFLDAETRKAMGTQAVMLAKAVGYNS 300

Query: 243 ISRSDFLFDPLSRKVFWLEINV 264
               +FL D   R  ++LE+N 
Sbjct: 301 AGTVEFLVDKH-RNFYFLEMNT 321


>gi|120612619|ref|YP_972297.1| cyanophycin synthetase [Acidovorax citrulli AAC00-1]
 gi|120591083|gb|ABM34523.1| cyanophycin synthetase [Acidovorax citrulli AAC00-1]
          Length = 723

 Score = 65.9 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 22/109 (20%), Positives = 49/109 (44%), Gaps = 5/109 (4%)

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILV--NRFTMDSQHLISPPYVIKPLKGGSSLGIIV-IK 145
           ++ DK  +K+++++CGVPV    +V   +   +    I  P  +KP  G  + G+ + + 
Sbjct: 217 IAQDKDFTKRLLAACGVPVPEGRVVADAQEAWEVAQDIGFPVTVKPSDGNHARGVTLELY 276

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194
            +  I      +     G  +++E++++G E    V+G   +       
Sbjct: 277 GEAEIKAAFALAEP--EGSAVIVERFIEGTEHRLLVVGGKVVAACRGET 323


>gi|238026779|ref|YP_002911010.1| carbamoyl phosphate synthase large subunit [Burkholderia glumae
           BGR1]
 gi|237875973|gb|ACR28306.1| Carbamoyl-phosphate synthase, large subunit [Burkholderia glumae
           BGR1]
          Length = 1084

 Score = 65.9 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 26/203 (12%), Positives = 72/203 (35%), Gaps = 13/203 (6%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--FTMDSQHLISPPYV 129
           LE   +P   +       + D+ R ++++   G+   P+         +     I  P V
Sbjct: 655 LEAAGVPIVGTSPDMIDAAEDRERFQKLLQDLGLRQPPNRTARAESEALALADEIGYPLV 714

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++ + + +   + ++   ++   +L+++++ D IE     + D    
Sbjct: 715 VRPSYVLGGRAMEIVHEPRDLERYMREAVKVSNDSPVLLDRFLNDAIECDVDCICDGEAV 774

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                +   +       +S  ++  + P  +      E++R      +A+   G+    F
Sbjct: 775 FIGGVMEHIEQAGV---HSGDSACSLPPYSLSAQTVAELKRQTGAMARALNVVGLMNVQF 831

Query: 249 LFD-------PLSRKVFWLEINV 264
                          ++ LE+N 
Sbjct: 832 AIQQVPQADGSKQDVIYVLEVNP 854



 Score = 61.7 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 49/285 (17%), Positives = 98/285 (34%), Gaps = 42/285 (14%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +              DV          V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYKVILVNSNPATIMTDPNTADVTYIEPITWEVVERIIAKERPDAILP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G    +  +      +LE  ++    +   A   + D+ + K+ ++  G+    S  
Sbjct: 89  TMGGQTALNCALDLHHHGVLEKYDVELIGASPEAIDKAEDRQKFKEAMTKIGLGSAKSGI 148

Query: 111 -------ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
                  + V      +      P VI+P       G  +    +       +    +  
Sbjct: 149 AHSMEEALKVQAEIAAATGGSGYPTVIRPSFTLGGSGGGIAYNREEFEEICKRGLDLSPT 208

Query: 164 DQLLIEQYVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IP 220
            +LLIE+ + G  E    V+ D + + +   ++   D           +S  V PA+ + 
Sbjct: 209 RELLIEESLLGWKEYEMEVVRDRADNCIIVCSIENLDPMGVHT----GDSITVAPAQTLT 264

Query: 221 LDIYKEVQRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
              Y+ ++  +    + IG   G S   F  +P   ++  +E+N 
Sbjct: 265 DKEYQILRNASLAVLREIGVDTGGSNVQFSINPKDGRMVVIEMNP 309


>gi|227505378|ref|ZP_03935427.1| acyl coenzyme A carboxylase [Corynebacterium striatum ATCC 6940]
 gi|227198080|gb|EEI78128.1| acyl coenzyme A carboxylase [Corynebacterium striatum ATCC 6940]
          Length = 589

 Score = 65.9 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 33/223 (14%), Positives = 76/223 (34%), Gaps = 21/223 (9%)

Query: 56  NVLHGNFG---EDGLV-QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           N +H  +G   E+    QA+++   + +      +     DK+ ++ +      P+ P  
Sbjct: 82  NAIHPGYGFLSENADFAQAVID-AGLIWIGPSPQSIRDLGDKVTARHIAERADAPMAPGT 140

Query: 112 ---LVNRFTMDS-QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL----DLLQSSSWNHG 163
              + +   +++       P  IK   GG   G+ V      +         ++++    
Sbjct: 141 PDPVKDAAEVEAFADEHGLPIAIKAAFGGGGRGMKVAYNRDEVAELFDSATREATAAFGR 200

Query: 164 DQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPL 221
            +  +E+Y+D    +   V+ D   +V  +           L+          PA  +  
Sbjct: 201 GECFVERYLDKARHVEAQVLADQHGNVVVVGT-----RDCSLQRRFQKLVEEAPAPFLTD 255

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +    +   A    +  G  G    ++L       + +LE+N 
Sbjct: 256 EQRASIHESAKRICREAGYYGAGTVEYLV-GSDGLISFLEVNT 297


>gi|298530921|ref|ZP_07018322.1| Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain
           [Desulfonatronospira thiodismutans ASO3-1]
 gi|298508944|gb|EFI32849.1| Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain
           [Desulfonatronospira thiodismutans ASO3-1]
          Length = 431

 Score = 65.9 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 45/106 (42%), Gaps = 1/106 (0%)

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKP 132
           E L +P        +    DK   K+ +   GV       V+   ++S      P V+KP
Sbjct: 98  EKLGLP-APYDYKTALRVTDKTLMKEGLVRAGVATSEYKYVSSSEVNSFQCNDYPKVVKP 156

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                S G+  ++    + L L+++ +++   + ++E + +G E+ 
Sbjct: 157 CDCNGSKGVRKVRNADELRLALVEACNFSRTGRAIVENFNEGQEVN 202


>gi|148549470|ref|YP_001269572.1| phosphoribosylglycinamide formyltransferase 2 [Pseudomonas putida
           F1]
 gi|148513528|gb|ABQ80388.1| phosphoribosylglycinamide formyltransferase 2 [Pseudomonas putida
           F1]
          Length = 393

 Score = 65.9 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 45/276 (16%), Positives = 97/276 (35%), Gaps = 43/276 (15%)

Query: 19  GKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIP 78
           GK     L+  G +V  +D   +   +    +  +  N+L G       ++A++E  +  
Sbjct: 24  GKEVVIELQRLGVEVIAVDRYANAPAMQVAHRSHVV-NMLDGV-----ALRAVIEAEKPH 77

Query: 79  YTHSGILASA----------------------LSMDKM-RSKQVVSSCGVPVCPSILVNR 115
           Y    I A A                      L+M++    +       +P  P    + 
Sbjct: 78  YIVPEIEAIATATLVELENEGFTVVPTARATQLTMNREGIRRLAAEELDLPTSPYHFADT 137

Query: 116 FTMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPL--DLLQSSSWNHGDQLLIEQY 171
           +   ++ +  +  P V+KP+   S  G  +++ D  +    D  Q        ++++E +
Sbjct: 138 YEDYAKAVADLGYPCVVKPVMSSSGKGQSLLRSDADLQASWDYAQEGGRAGKGRVIVEGF 197

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRL 230
           +D  E    ++    +  T    P         +    +      P  +      E QR+
Sbjct: 198 ID-FEYEITLLTVRHVGGTTFLEPVG------HRQEKGDYQESWQPQAMSPKALAESQRV 250

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
           A     A+G RG+   +        +V++ E++ +P
Sbjct: 251 AKAVTDALGGRGLFGVELFV--KGDQVWFSEVSPRP 284


>gi|91977007|ref|YP_569666.1| carbamoyl-phosphate synthase L chain, ATP-binding [Rhodopseudomonas
           palustris BisB5]
 gi|91683463|gb|ABE39765.1| Carbamoyl-phosphate synthase L chain, ATP-binding [Rhodopseudomonas
           palustris BisB5]
          Length = 671

 Score = 65.9 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 77/220 (35%), Gaps = 18/220 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E            + +             K  SK ++   GVP+ P    
Sbjct: 86  AVHPGYGFLSESAEFAQACADAGLIFVGPTPQMITAMGSKSGSKALMEKAGVPLVPGYHG 145

Query: 112 --LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
               +     +   I  P ++K   GG   G+ V++    +   ++    ++ +    D+
Sbjct: 146 EAQDDATLAAAADKIGFPVLVKASAGGGGRGMRVVRAANELGEAIVSAKREAKAAFGDDR 205

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           LLIE+YVD    +   ++GD+  ++  +   +        K             +     
Sbjct: 206 LLIEKYVDNPRHIEVQIVGDSHGNLVSLFERECTLQRRHQK----VIEEAPSPTLDAAQR 261

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + V   A  A  A+   G    +F+ D     VF++E+N 
Sbjct: 262 ETVCEAARRAAGAVNYVGAGTIEFVSDGKD--VFFIEMNT 299


>gi|300869897|ref|YP_003784768.1| carbamoyl phosphate synthase large subunit [Brachyspira pilosicoli
           95/1000]
 gi|300687596|gb|ADK30267.1| carbamoyl phosphate synthase large subunit [Brachyspira pilosicoli
           95/1000]
          Length = 1067

 Score = 65.9 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 44/289 (15%), Positives = 106/289 (36%), Gaps = 39/289 (13%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------------- 49
           G ++E + +   G     +L++ G++V  I+ + +  +  A +                 
Sbjct: 25  GQAAEFDYA---GTQACQSLKEEGYEVVLINSNPATIMTDAAIADKVYIEPINLDFAKRI 81

Query: 50  ----KPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
               +PD     L G  G + +V+     IL+   +    + + A   + D+   K++++
Sbjct: 82  IYKERPDAILGSLGGQTGLNLVVELAESGILDEYNVEVLGTDLNAINTAEDRELFKKLMN 141

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
               PV  S++V+     ++  + I    V++P       G    + ++ +         
Sbjct: 142 DINEPVPESVIVHSVEEAIEFANKIGYHLVVRPAYTLGGTGGGFARNEKELIEICETGLK 201

Query: 160 WNHGDQLLIEQYVDG---IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216
            +   + L+E+ + G   IE       + +  V            +     + +S  V P
Sbjct: 202 ISPVHECLVEKSIAGYKEIEYEVMRDNNDNAIVVCNMENVDPVGIH-----TGDSIVVAP 256

Query: 217 AK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + +     + ++ ++    +A+   G        DP S K + +E+N 
Sbjct: 257 CQTLSDRENQMLRNVSLKIIRALKICGGCNVQLALDPNSFKYYIIEVNP 305



 Score = 61.7 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/220 (13%), Positives = 82/220 (37%), Gaps = 23/220 (10%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS---ILVNRFTMDSQHLISPPY 128
           L +  +    + +     + D+   ++++ +  +P       I V+   +   + I  P 
Sbjct: 650 LVMHGVNILGTSLENINRAEDRHEFEEMLKTLNIPQPKGKTAITVDE-ALVIANKIGYPV 708

Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW-NHGDQLLIEQYVDGIELTCGVMGDAS- 186
           +++P        + ++  D ++ + +  +    ++   +LI++Y+ G E+    + D+  
Sbjct: 709 LVRPSYVLGGRAMEIVYNDAALKIYMETAVKEVSNKAPILIDKYIVGKEIETDAISDSEH 768

Query: 187 ---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRG 242
              +      + ++  +S        +S  V P + I   +   +        +     G
Sbjct: 769 NVFIPGIMEHIERAGIHS-------GDSISVYPPQTISKKVKDSIIDYTKRIGEGFNFIG 821

Query: 243 ISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277
           +    F+ D     V+ LE+N       P ++ ++  P  
Sbjct: 822 LYNIQFIVDKDDN-VYVLEVNPRSSRTVPFLSKITNVPMA 860


>gi|289663384|ref|ZP_06484965.1| carbamoyl phosphate synthase large subunit [Xanthomonas campestris
           pv. vasculorum NCPPB702]
          Length = 903

 Score = 65.9 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 34/223 (15%), Positives = 87/223 (39%), Gaps = 12/223 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYV 129
           LE   +P   +   +  L+ D+ R +Q+V   G+   P+ +             I  P V
Sbjct: 477 LEANGVPVIGTSPDSIDLAEDRERFQQLVDKLGLKQPPNRIARNSEEALVLAREIGYPLV 536

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLD 188
           ++P        + ++  +  +   +  +   ++   +L+++++D  +E+   ++ D   +
Sbjct: 537 VRPSYVLGGRAMEIVYGESDLARYVRDAVKVSNDSPVLLDRFLDNAVEVDVDIIADKDGN 596

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           V    V   +       +S  +S  + P  +  +   E++R   +  + +   G+  + F
Sbjct: 597 VLIGGV--MEHIEEAGVHSGDSSCSLPPYSLSPETQAELRRQVVMLAEGLNVVGLMNTQF 654

Query: 249 LF---DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
                +     V+ LE+N +   T     P ++   G    ++
Sbjct: 655 AVQVNEAGDDIVYLLEVNPRASRT----VPFVSKAIGIPLAKI 693


>gi|170078634|ref|YP_001735272.1| phosphoribosylglycinamide formyltransferase 2 [Synechococcus sp.
           PCC 7002]
 gi|169886303|gb|ACB00017.1| phosphoribosylglycinamide formyltransferase 2 [Synechococcus sp.
           PCC 7002]
          Length = 395

 Score = 65.9 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 41/240 (17%), Positives = 86/240 (35%), Gaps = 27/240 (11%)

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTH-SGILASALSMDKMRSKQV 99
           ++  V+   +PDL    +     E      ++EL +  YT      A+  +M++ R + +
Sbjct: 60  ALEAVIKKHQPDLIVPEVEAIRTE-----KLIELEQQGYTVIPTAAATNFTMNRDRIRDL 114

Query: 100 V-SSCGVPVCPSILVNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD--L 154
                G+                    I  P VIKP+   S  G  V++    +      
Sbjct: 115 ASEELGLRTAKYAYATNLAELKTVAQDIGFPNVIKPVMSSSGKGQSVVQTADELEAAWNY 174

Query: 155 LQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIA--VPKSDFYSYELKYSSLNS 211
               +     +++IE+++D  +E+T   +   + +         + +   Y+  +     
Sbjct: 175 AIEGARGDTAKIIIEEFIDFEVEITLLTIRQWAGETLFCPAIAHRQERGDYQESW----- 229

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP---GM 268
               P  +     K+ Q +A      +G  GI   +F       +V + E++ +P   GM
Sbjct: 230 ---QPVGLTAAQVKDAQDIARKVTDKLGGAGIFGVEFFITK--DEVIFSELSPRPHDTGM 284


>gi|242798922|ref|XP_002483268.1| carbamoyl-phosphate synthase, large subunit [Talaromyces stipitatus
           ATCC 10500]
 gi|218716613|gb|EED16034.1| carbamoyl-phosphate synthase, large subunit [Talaromyces stipitatus
           ATCC 10500]
          Length = 1180

 Score = 65.9 bits (160), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 57/291 (19%), Positives = 105/291 (36%), Gaps = 41/291 (14%)

Query: 6   GGIS----SEREVSLSSGKACASALEDAGF--------------------KVSQIDVDRS 41
           GG+S     E + S   G     AL++AG                     +V  + V   
Sbjct: 113 GGLSIGQAGEFDYS---GSQALKALKEAGVKSVLINPNIATIQTDHKLADEVYYLPVTPE 169

Query: 42  -VGLVLAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRS 96
            V  V+   +PD  F    G    +  VQ     I E   +    + I     S D+   
Sbjct: 170 YVTHVIEREQPDGIFLSFGGQTALNLGVQMNRMGIFERYGVRVLGTSIRTLETSEDRDLF 229

Query: 97  KQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154
            + ++   +P+  SI  N     +++   I  P +++       LG       + +    
Sbjct: 230 AKALNEINIPIAESIACNTVDEALEAADKIGYPIIVRSAYALGGLGSGFASNREELK--N 287

Query: 155 LQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTH 213
           L S S +   Q+L+E+ + G  E+   V+ DA  +   I V   + +   L   + +S  
Sbjct: 288 LSSRSLSLAPQILVEKSLKGWKEVEYEVVRDAKNN--CITVCNMENFD-PLGIHTGDSIV 344

Query: 214 VLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
           V P++ +  + Y  ++  A    + +G  G     +   P       +E+N
Sbjct: 345 VAPSQTLSDEEYHMLRTAAIKIVRHLGVVGECNVQYALQPDGLDYRVIEVN 395



 Score = 54.4 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/197 (17%), Positives = 70/197 (35%), Gaps = 24/197 (12%)

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--FTMDSQHLISPPYVIKPLKGGSS 138
            +       + D+ +  Q++ S GV       +            +  P +++P    S 
Sbjct: 751 GTDPADIDKAEDRHKFSQILDSIGVDQPAWKELTSVSEAEKFAETVGYPVLVRPSYVLSG 810

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL----TCGVMGDASLDVTEIAV 194
             + VI     +   LL +SS +    ++I ++++G +       G  G   L      V
Sbjct: 811 AAMSVIYSQDELHEKLLNASSVSPDHPVVITKFIEGAQEIDVDAVGSNGKLILHAVSEHV 870

Query: 195 PKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRG-----ISRSDF 248
             +  +S        ++T VLP   +   +   V+ +A    +A    G     I ++D 
Sbjct: 871 ENAGVHS-------GDATLVLPPTSLEQSVMDRVKEIAEKVAKAWNITGPFNMQIIKAD- 922

Query: 249 LFDPLSRKVFW--LEIN 263
             +P   +     +E N
Sbjct: 923 --NPDGGEPLLKVIECN 937


>gi|150403045|ref|YP_001330339.1| phosphoribosylglycinamide formyltransferase 2 [Methanococcus
           maripaludis C7]
 gi|171472895|sp|A6VIB2|PURT_METM7 RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|150034075|gb|ABR66188.1| phosphoribosylglycinamide formyltransferase 2 [Methanococcus
           maripaludis C7]
          Length = 388

 Score = 65.9 bits (160), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 43/248 (17%), Positives = 87/248 (35%), Gaps = 22/248 (8%)

Query: 31  FKVSQIDVDR--SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
            +   ID+    ++  V+   KPDL    +      +      LE     +      A+ 
Sbjct: 52  HRFHVIDMKDGGALRAVIEREKPDLIVPEIEAI---NTDTLKELETEGY-HVVPTANATK 107

Query: 89  LSMDKM-RSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVIK 145
           L+MD+    +      G+               ++   I  P VIKP+   S  G   IK
Sbjct: 108 LTMDREGIRRLAFEKLGLRTAKYEFAESLEELKEAVQRIGIPCVIKPIMSSSGKGQSTIK 167

Query: 146 KDQSIPL--DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYE 203
            ++ I    D  +S++   G ++++E+++   +    ++   + + T+   P        
Sbjct: 168 SERDIEKSWDYAKSAARGIGTKVIVEEFIK-FDYEITLLTARTSEGTKFCEPIGHIQI-- 224

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
                       P  +      + Q +A      +G  GI   +     L  +V + E++
Sbjct: 225 ---DGDYHESWQPHPMCAPTKAKAQEMAKKITDELGGYGIFGVELFV--LDDEVIFSEVS 279

Query: 264 VQP---GM 268
            +P   GM
Sbjct: 280 PRPHDTGM 287


>gi|27365136|ref|NP_760664.1| glutathione synthase [Vibrio vulnificus CMCP6]
 gi|27361282|gb|AAO10191.1| Glutathione synthase [Vibrio vulnificus CMCP6]
          Length = 483

 Score = 65.9 bits (160), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 27/182 (14%), Positives = 74/182 (40%), Gaps = 10/182 (5%)

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIK 145
             +K+   +++ +  VP   S+++  F  + +    + +  P V+K   G  S G++ ++
Sbjct: 275 CTNKVFLTELLKNNKVPAPASVILKNFDPEWKSDLLNELDFPMVLKIPDGAFSRGVVKVR 334

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYEL 204
            ++ +  +   ++ +   + +L + +     +   G++   ++   +  + +  +  Y+ 
Sbjct: 335 NEEELEKEA--TALFEKSELILAQAFMPTDFDWRIGILNRQAIFSCKYMMSRGHWQIYQH 392

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             S   S+          + K V  +A  A   IG       D     +  +V+ +E+N 
Sbjct: 393 HNSGRVSSGGFETLDLKQVPKNVVDVALKAANLIGNGLYG-VD--LKEVDGQVYVIEVND 449

Query: 265 QP 266
            P
Sbjct: 450 NP 451


>gi|18312299|ref|NP_558966.1| carbamoyl phosphate synthase large subunit [Pyrobaculum aerophilum
           str. IM2]
 gi|22095515|sp|Q8ZY48|CARB_PYRAE RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|18159745|gb|AAL63148.1| carbamoyl-phosphate synthase large subunit [Pyrobaculum aerophilum
           str. IM2]
          Length = 1024

 Score = 65.9 bits (160), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 46/306 (15%), Positives = 105/306 (34%), Gaps = 52/306 (16%)

Query: 18  SGKACASALEDAGF--------------------KVSQIDVDRS-VGLVLAHLKPDLAFN 56
           SG     A  + G                     +V  I + R  +  V+   +PD    
Sbjct: 25  SGSQALKAFREEGIKTVLVNPNIATIQTSKFLADRVYFIPIQRQFLAEVIEQERPDA--I 82

Query: 57  VLHGNFGE-------DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109
              G  G+       D     +LE   +    + +     ++ +   ++ +   G+PV P
Sbjct: 83  AC-GFGGQTALSACVDLDEAGVLEKYGVRVVGTPVRGIKRALSRDLFQKAMREAGIPVPP 141

Query: 110 SILV--NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL 167
           S         ++    +  P V++        G  V + ++++   + ++ + +   ++L
Sbjct: 142 SSPAKSPEEAIEIARYLGYPVVVRVSFNLGGAGAFVARSEEALKARIYKAFAQSAIGEVL 201

Query: 168 IEQYVDG-IELTCGVMGD-----ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIP 220
           +E+Y++G  E+   V+ D     A++   E   P            + +S  V P   + 
Sbjct: 202 VEKYLEGWKEIEFEVVRDAYDNVAAVVCMENIDPMGVH--------TGDSIVVAPCLTLT 253

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280
            + Y+  + ++    + I   G        +    + + +E    P M+  S     +  
Sbjct: 254 DEEYQTARNISIGVVRTIELIGEGNVQVAINYAGPEQYAIE--TNPRMSRSS--ALASKA 309

Query: 281 AGYSFR 286
           +GY   
Sbjct: 310 SGYPLA 315



 Score = 60.5 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 47/315 (14%), Positives = 117/315 (37%), Gaps = 47/315 (14%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNV 57
           G+S E + S  +    A+ L++ G++V+ +         D D    L    +  +   ++
Sbjct: 553 GVSVEFDWSTVT---LATELKNRGYRVAILNYNPETVSTDWDIVDKLYFDEISVERVLDI 609

Query: 58  LH-GNFG------EDGLV-QAI---LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP 106
           +     G        G + Q +   LE + +    +   +  ++ D+ +  +++   G+ 
Sbjct: 610 VEKEGNGVTVVLYAGGQIGQRLYVPLEKVGVKIGGTRAKSIDMAEDRGKFSKLLDRLGIK 669

Query: 107 VCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164
             P +        +     +  P +++P        + V    + +   L +++  +   
Sbjct: 670 QPPWLYAASVEEAVKLAEGLGFPVLLRPSYVLGGTYMAVAYNKEELINFLSKAAKVSGEY 729

Query: 165 QLLIEQY-VDGIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI 219
            ++I ++   GIE     + D     +  +  I  P            S +ST VLP + 
Sbjct: 730 PVVISKFMPRGIEAEVDAVSDGVKIVATPIEHIEPPGVH---------SGDSTMVLPPRR 780

Query: 220 PLDIY-KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278
             +   K++  +A      +  +G     F+       V+ +E N++      S+ P ++
Sbjct: 781 LEEWAVKKMIDIAHTLAVELEVKGPLNVQFIVQDD---VYVIEANLR---VSRSM-PLVS 833

Query: 279 AYAGYSFRELLLWMV 293
              G ++  L+  ++
Sbjct: 834 KATGVNYMSLVADVL 848


>gi|320096145|ref|ZP_08027739.1| acetyl-coA carboxylase carboxyl transferase subunit alpha
           [Actinomyces sp. oral taxon 178 str. F0338]
 gi|319976921|gb|EFW08670.1| acetyl-coA carboxylase carboxyl transferase subunit alpha
           [Actinomyces sp. oral taxon 178 str. F0338]
          Length = 484

 Score = 65.9 bits (160), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 35/216 (16%), Positives = 75/216 (34%), Gaps = 13/216 (6%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV-PVC---P 109
            +H  +G   E+      +E   I +            DK+ +++V  +CGV PV     
Sbjct: 79  AIHPGYGFLSENPEFARAIENTGIAWIGPAPGVIEALGDKISARRVAQACGVDPVPGLSE 138

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            +               P V+K   GG   GI +++    + L   + +         +E
Sbjct: 139 PVTARAEVEAFIAEHGYPVVLKRADGGGGRGITIVRSGADLDLFFARHTDPADLGAHFVE 198

Query: 170 QYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           ++V+    +      D+  +   I+           K             +P   ++ + 
Sbjct: 199 RFVEVARHVETQSARDSHGNFHVISTRDCSVQRRNQK----LVEEAPAPFLPDGAHERLV 254

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +    + +G  G+   +FL +P    +++LE+N 
Sbjct: 255 EWSRALFEHVGYVGVGTCEFLLEP-DGSIWFLEVNP 289


>gi|239943851|ref|ZP_04695788.1| hypothetical protein SrosN15_22831 [Streptomyces roseosporus NRRL
           15998]
 gi|239990307|ref|ZP_04710971.1| hypothetical protein SrosN1_23573 [Streptomyces roseosporus NRRL
           11379]
          Length = 414

 Score = 65.9 bits (160), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 25/165 (15%), Positives = 59/165 (35%), Gaps = 28/165 (16%)

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD----SQHLISPPYVI 130
           L +P   +    +    +K    +  +  GVP   ++                ++ P V+
Sbjct: 100 LGLP--GNDPSRALSCRNKRTMARAFAEHGVPAPRTLTPRTVDEAYRSVQAAGLAYPLVV 157

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH--------GDQLLIEQYVDGIELTCGVM 182
           KP +   S G+ V+  D+ +      + S              +++++YV G E +    
Sbjct: 158 KPAEQSGSWGVAVVHSDEELATAFAAAQSHLFQMPHGIPLDPHVIVQEYVGGTEFSI--- 214

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNST-----HVLPAKIPLD 222
              ++ V  +  P   +     K+++  +      H +PA++   
Sbjct: 215 --ETVSVGGVVTPLVPY----DKFTTGGARRAELGHTVPAELDEA 253


>gi|256832553|ref|YP_003161280.1| carbamoyl-phosphate synthase, large subunit [Jonesia denitrificans
           DSM 20603]
 gi|256686084|gb|ACV08977.1| carbamoyl-phosphate synthase, large subunit [Jonesia denitrificans
           DSM 20603]
          Length = 1109

 Score = 65.9 bits (160), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 45/244 (18%), Positives = 95/244 (38%), Gaps = 14/244 (5%)

Query: 32  KVSQIDV--DRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGIL 85
             + I+      +  ++A  +PD     L G    +  +      ILE   +    + I 
Sbjct: 62  DATYIEPITTDVLRSIIAKERPDAILPTLGGQTALNAAIALDEAGILEEFNVELIGANIA 121

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNR--FTMDSQHLISPPYVIKPLKGGSSLGIIV 143
           A     D+   K+VV +CG     S +V+       +   +  P V++P      LG  +
Sbjct: 122 AIQRGEDREEFKKVVDTCGGESARSAIVHSLNEAKAAAEELGYPVVVRPSFTMGGLGSGI 181

Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSY 202
              +Q +         ++   ++L+E+ + G  E    +M D + +V  I   ++     
Sbjct: 182 AYTEQDLERIAGAGLHYSPTTEVLLEESILGWKEYELELMRDKNDNVAVICSIENVD--- 238

Query: 203 ELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWL 260
            +   + +S  V PA  +    Y++++ +     + +G   G     F  DP + ++  +
Sbjct: 239 PVGVHTGDSITVAPALTLTDREYQKLRDIGIAVIREVGVDTGGCNIQFAVDPDTGRIIVI 298

Query: 261 EINV 264
           E+N 
Sbjct: 299 EMNP 302



 Score = 49.0 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 38/238 (15%), Positives = 70/238 (29%), Gaps = 35/238 (14%)

Query: 67  LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF--TMDSQHLI 124
            + A L    IP   +   A   + D+    +V++   +P              +    I
Sbjct: 654 SLAARLAEAGIPILGTSPAAIDAAEDRSEFGRVLTEANLPAPAYGTATTLGQAQEIAERI 713

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
             P +++P       G+ ++     +          ++  + L E  + G  L   ++ D
Sbjct: 714 GYPVLVRPSYVLGGRGMEIVYSHGQLA---------DYVQRALGEAALSGGPLA-PILID 763

Query: 185 ASL-DVTEIAVPKSDFYSYELKYSSLNSTHV--------------LPAKIPLDIYKEVQR 229
             L D  EI V     +     Y      H+               P  +       +  
Sbjct: 764 RFLDDAMEIDV--DVLFDGVDMYVGGIMEHIEEAGIHSGDSACVLPPVSLSDAEIDRIVA 821

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287
                 Q IG  G+    F     S  ++ LE N +   T     P +A   G    +
Sbjct: 822 STRALAQGIGVHGLMNVQFAL--ASGVLYVLEANPRASRT----VPFVAKATGVPLAK 873


>gi|145593407|ref|YP_001157704.1| carbamoyl-phosphate synthase L chain, ATP-binding [Salinispora
           tropica CNB-440]
 gi|145302744|gb|ABP53326.1| Carbamoyl-phosphate synthase L chain, ATP-binding [Salinispora
           tropica CNB-440]
          Length = 583

 Score = 65.9 bits (160), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 75/221 (33%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLV-QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            +H  +G   E+    QA+++  E+ +      A     DK+ ++ +    G P+ P   
Sbjct: 76  AVHPGYGFLSENADFAQAVID-AELTWIGPTPQAIRDLGDKVTARHIAQRAGAPLVPGTP 134

Query: 113 VNRFTMDSQHLI----SPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSWNHGD 164
               + D           P  IK   GG   G+ V +  + IP        ++ +     
Sbjct: 135 DPVGSADEVLAFAVDHGLPVAIKAAFGGGGRGLKVARTMEEIPHLFESATREAVAAFGRG 194

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           +  +E+Y+D    +   V+ D   +V  +            K             +    
Sbjct: 195 ECFVERYLDQPRHVEAQVLADQHGNVIVMGTRDCSLQRRHQK----LVEEAPAPFLTDAQ 250

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +++   A    +  G  G    ++L   +   + +LE+N 
Sbjct: 251 RQQIHDSAKAICREAGYHGAGTVEYLV-GVDGTISFLEVNT 290


>gi|113868084|ref|YP_726573.1| carbamoyl phosphate synthase-like protein [Ralstonia eutropha H16]
 gi|113526860|emb|CAJ93205.1| carbamoylphosphate synthase, large subunit [Ralstonia eutropha H16]
          Length = 339

 Score = 65.9 bits (160), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 41/208 (19%), Positives = 72/208 (34%), Gaps = 26/208 (12%)

Query: 69  QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL--ISP 126
           Q   E+  IP   S     +L  DK  + Q   S G+    S         +     ++ 
Sbjct: 89  QRFREIGTIPVI-SSAEVISLCADKFLTAQFAESIGLSTPRSYATLESAEHAIATGSVAF 147

Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLD------LLQSSSWNH----GDQLLIEQYVDGIE 176
           P ++KP  G +S GI V++    +         +LQ S +      G ++LI++ + G E
Sbjct: 148 PLIVKPRWGSASFGIFVVEDLNELRFARAYCQRILQKSIFAKMGQPGMEVLIQEVISGQE 207

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
               +  D        AV K      +L   +  +   +  +           LA    +
Sbjct: 208 YGLDIFNDFEARPIGFAVRK------KLSMRAGETDRAITVESAP-----FNDLATRISR 256

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +  R I   D        + + LE+N 
Sbjct: 257 EL--RHIGNVDCDVIERDGRQYLLEMNP 282


>gi|240102695|ref|YP_002959004.1| phosphoribosylglycinamide formyltransferase 2 [Thermococcus
           gammatolerans EJ3]
 gi|239910249|gb|ACS33140.1| Phosphoribosylglycinamide formyltransferase 2 (purT) [Thermococcus
           gammatolerans EJ3]
          Length = 430

 Score = 65.9 bits (160), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 48/296 (16%), Positives = 101/296 (34%), Gaps = 44/296 (14%)

Query: 19  GKACASALEDAGFKVSQID--------------------VDRSVGLVLAHLKPDLAFNVL 58
           GK  A   +  G +V  +D                        +  V+   KPD     +
Sbjct: 28  GKEIAIEAQRLGVEVVAVDRYANAPAMQVAHRSYVGDMRNADFLFSVVEREKPDAIIPEI 87

Query: 59  HGNFGEDGLVQAILELLEIPY-THSGILASALSMDKMRSKQ-VVSSCGVPVCPSILVNRF 116
                    + A+ EL +  Y       A+ ++M + R+++ +     VP          
Sbjct: 88  EAIN-----LDALFELEKDGYFVVPNARATWIAMHRERTRETLAKEAKVPTSRYAYATTL 142

Query: 117 TM--DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD--LLQSSSWNHGDQLLIEQYV 172
               ++   I  P   K +   S  G   ++  + IP    + +  +    D++++E+++
Sbjct: 143 DELYEACERIGYPCHTKAIMSSSGKGSYFVEGPEDIPKAWEVAKKKARGSADKIIVEEHI 202

Query: 173 DGIELTCGVMG----DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           D  ++    +     D + +V          Y  +  Y +       PA+I     +EV 
Sbjct: 203 D-FDVEITELAVRHYDENGEVVTTFPKPVGHYQIDGDYHASW----QPAEISEKAEREVY 257

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
           R+A      +G  G+   +        KV+  E++ +P      +    +   G+S
Sbjct: 258 RIAKRITDVLGGLGLFGVEMFV--KGDKVWANEVSPRP--HDTGMVTLASHPTGFS 309


>gi|229918568|ref|YP_002887214.1| carbamoyl-phosphate synthase, large subunit [Exiguobacterium sp.
           AT1b]
 gi|259585680|sp|C4L5W3|CARB_EXISA RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|229469997|gb|ACQ71769.1| carbamoyl-phosphate synthase, large subunit [Exiguobacterium sp.
           AT1b]
          Length = 1067

 Score = 65.9 bits (160), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 27/200 (13%), Positives = 78/200 (39%), Gaps = 10/200 (5%)

Query: 68  VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLIS 125
           + A LE   +    + +     + D+   +  +S+  +   P          +   + + 
Sbjct: 642 LAASLEANGVKILGTTLEDIDRAEDRKAFEATLSAERLAQPPGKTATNVEEAVACANELG 701

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            P +++P        + ++ +   +   +  +   +    +LI++Y+ GIE+    + D 
Sbjct: 702 YPVLVRPSYVLGGRAMEIVYEQSELERYMRHAVIASKDRPVLIDRYLTGIEIEVDAICDG 761

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGIS 244
               T++ +P    +       S +S  V P  ++  ++ ++V        +A   +G+ 
Sbjct: 762 ----TDVYIPGIMEHIERAGVHSGDSIAVYPPQRLSEELKQKVVDYTIKLAKAFRIKGLL 817

Query: 245 RSDFLFDPLSRKVFWLEINV 264
              F++   +  ++ +E+N 
Sbjct: 818 NIQFVY---ADDLYVIEVNP 834



 Score = 60.9 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 45/268 (16%), Positives = 95/268 (35%), Gaps = 30/268 (11%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL++ G++V  +         D                V  ++   +PD     L G  G
Sbjct: 36  ALKEEGYEVILVNSNPATIMTDPTTADRVYIEPLEPEFVERIIRQERPDALLATLGGQTG 95

Query: 64  EDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFT 117
            +       + +L    +    + + A   + D+ + + ++   G  V  S +V+     
Sbjct: 96  LNLAFELDKRGVLRDCGVELLGTKLSAIVQAEDREQFRNLMFELGHGVPESEIVHTLESA 155

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IE 176
                 I  P +I+P       G  +    +S    +      +   Q+L+E+ + G  E
Sbjct: 156 WGFAERIGYPIIIRPAYTLGGTGGGIAHDRESFEQIVESGLKASPVTQVLLEKSIAGMKE 215

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +   VM D+S     I V   + +     ++  +        +    Y+ ++ ++    +
Sbjct: 216 VEFEVMRDSSDQA--IIVCAMENFDPVGVHTGDSIVFAPTQTLSDRDYQMLRSVSLDIIR 273

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINV 264
           A+G  G     F  DP S   + +E+N 
Sbjct: 274 ALGIEGGCNIQFALDPDSFTYYVIEVNP 301


>gi|291447314|ref|ZP_06586704.1| carboxylase [Streptomyces roseosporus NRRL 15998]
 gi|291350261|gb|EFE77165.1| carboxylase [Streptomyces roseosporus NRRL 15998]
          Length = 405

 Score = 65.5 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 25/165 (15%), Positives = 59/165 (35%), Gaps = 28/165 (16%)

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD----SQHLISPPYVI 130
           L +P   +    +    +K    +  +  GVP   ++                ++ P V+
Sbjct: 91  LGLP--GNDPSRALSCRNKRTMARAFAEHGVPAPRTLTPRTVDEAYRSVQAAGLAYPLVV 148

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH--------GDQLLIEQYVDGIELTCGVM 182
           KP +   S G+ V+  D+ +      + S              +++++YV G E +    
Sbjct: 149 KPAEQSGSWGVAVVHSDEELATAFAAAQSHLFQMPHGIPLDPHVIVQEYVGGTEFSI--- 205

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNST-----HVLPAKIPLD 222
              ++ V  +  P   +     K+++  +      H +PA++   
Sbjct: 206 --ETVSVGGVVTPLVPY----DKFTTGGARRAELGHTVPAELDEA 244


>gi|262369444|ref|ZP_06062772.1| carbamoyl-phosphate synthase [Acinetobacter johnsonii SH046]
 gi|262315512|gb|EEY96551.1| carbamoyl-phosphate synthase [Acinetobacter johnsonii SH046]
          Length = 1077

 Score = 65.5 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 32/196 (16%), Positives = 75/196 (38%), Gaps = 8/196 (4%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQHLISPPYV 129
           LE    P   +   A   + D+ R +Q++    +    + +V      M     +  P V
Sbjct: 653 LEEAGAPIIGTSPDAIDRAEDRERFQQMIQRLQLRQPNNSIVKSAEEGMAEASKVGYPLV 712

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  D  +   L  +   ++   +L+++++ D IE+    + D    
Sbjct: 713 VRPSYVLGGRAMEIVYNDDELKRYLRDAVQASNEAPVLLDRFLDDAIEVDVDCVSDGKDV 772

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           V    +   +       +S  ++  + P  + ++I  E++R      + +G  G+    F
Sbjct: 773 VIGGIMQHIEQAGI---HSGDSACSIPPYSLSVEIQDEMRRQTVAMAKELGVVGLMNVQF 829

Query: 249 LFDPLSRKVFWLEINV 264
                   V+ LE+N 
Sbjct: 830 AV--KGEDVYILEVNP 843



 Score = 63.2 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 45/278 (16%), Positives = 95/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +              D         ++V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPAMADATYIEPITWQTVAQIIEKERPDAVLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      ILE   +    +   A   + D+    + +   G+    + +
Sbjct: 89  TMGGQTALNCALALDANGILEKYNVELIGATKEAIEKAEDRKLFDEAMRKIGLECPKAAI 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  ++ Q     P +I+P       G  +    +       +    +   QLLI++
Sbjct: 149 AENMEEALEIQARFGFPVIIRPSFTMGGSGGGIAYNKEEFLEICERGFDLSPTKQLLIDE 208

Query: 171 YVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + + +   A+   D           +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCAIENFDPMGVHT----GDSITVAPAQTLTDKEYQLM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F   P + ++  +E+N 
Sbjct: 265 RNASLAVLREIGVETGGSNVQFGICPDTGRMVIIEMNP 302


>gi|302559538|ref|ZP_07311880.1| conserved hypothetical protein [Streptomyces griseoflavus Tu4000]
 gi|302477156|gb|EFL40249.1| conserved hypothetical protein [Streptomyces griseoflavus Tu4000]
          Length = 415

 Score = 65.5 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 38/205 (18%), Positives = 85/205 (41%), Gaps = 19/205 (9%)

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD---SQHLISPPYV 129
            +L  PY      A   S+DK     V+   G+P     L +   ++   +   +S P +
Sbjct: 87  RILGTPYQ-PAPDAVRASVDKGYFHAVLERVGLP-GYGHLRSADPVELRLAAATLSLPLI 144

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC-GVMGDASLD 188
           +KP     S G+ V+    ++P  L ++ +++   ++++E+ + G  L+    + D  L 
Sbjct: 145 VKPNDSSGSKGVQVVADPAALPAALAEARAYSFSGEVMVEEMLLGRHLSAEAFLRDGKLA 204

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG-CRGISRSD 247
            T +    +    +      + + H +PA++       ++ +      A+G   G    D
Sbjct: 205 TTAVTERATTGAPH-----MITTAHTVPAELTPATEIRLRSMIMDICVALGHTDGPVNFD 259

Query: 248 FLFDPLSRKVFWLEI------NVQP 266
           F+ D  + ++ ++E+      N  P
Sbjct: 260 FVVD-RTEEIRFIEMGARLGGNGMP 283


>gi|119716658|ref|YP_923623.1| carbamoyl-phosphate synthase large subunit [Nocardioides sp. JS614]
 gi|119537319|gb|ABL81936.1| carbamoyl-phosphate synthase large subunit [Nocardioides sp. JS614]
          Length = 1143

 Score = 65.5 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 41/245 (16%), Positives = 90/245 (36%), Gaps = 16/245 (6%)

Query: 32  KVSQIDVD--RSVGLVLAHLKPDLAFNVLHGNFGEDGLV----QAILELLEIPYTHSGIL 85
             + ++      V  V+A  +PD     L G    +  +    + +LE   +    +   
Sbjct: 62  DATYVEPITPEFVEKVIAKERPDALLPTLGGQTALNAAIALHERGVLEEYGVEMIGASFE 121

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL--ISPPYVIKPLKGGSSLGIIV 143
           A     ++     +V+S G  V  S++ +      + +  +  P V++P       G  +
Sbjct: 122 AIHRGENRELFNGIVASVGGEVARSVICHSLEDCEKAVVELGYPVVVRPSFTMGGTGSGI 181

Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASL-DVTEIAVPKSDFYS 201
              +  +        + +   ++LIE+ + G  E    VM D +   V   ++   D   
Sbjct: 182 AYDESDLARIAGAGLAASPTTEVLIEESIIGWKEYELEVMRDKADNVVIVCSIENVDPMG 241

Query: 202 YELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFW 259
                   +S  V PA  +    Y+ ++ L+    + +G   G     +  +P+  +V  
Sbjct: 242 VHT----GDSITVAPAMTLTDREYQRLRDLSIAIIREVGVDTGGCNIQYAVNPVDGRVIV 297

Query: 260 LEINV 264
           +E+N 
Sbjct: 298 IEMNP 302



 Score = 55.5 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/205 (14%), Positives = 78/205 (38%), Gaps = 15/205 (7%)

Query: 66  GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHL 123
           GL Q + +   +    +   A  L+ ++     V+   G+P     +   F    +    
Sbjct: 693 GLAQGLKDN-GVTVLGTSPEAIHLAEERGAFGHVLHEAGLPAPKHGMATSFAEAKEIADE 751

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVM 182
           I  P +++P       G+ ++  D ++   + +++  +    +L+++++ D +E+    +
Sbjct: 752 IGFPVLVRPSYVLGGRGMEIVYDDDALRGYITRATQISPAHPVLVDRFIDDAVEIDVDAL 811

Query: 183 GDAS---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
            D     L      + ++  +S        +S  + P  +     + ++       + +G
Sbjct: 812 FDGEELFLGGVMEHIEEAGIHS------GDSSCALPPITLGDSEIRRIREATEAIARGVG 865

Query: 240 CRGISRSDFLFDPLSRKVFWLEINV 264
            RG+    F     S  ++ LE N 
Sbjct: 866 VRGLLNIQFAL--GSDVLYVLEANP 888


>gi|260063458|ref|YP_003196538.1| acetyl-CoA carboxylase, biotin carboxylase [Robiginitalea biformata
           HTCC2501]
 gi|88782902|gb|EAR14076.1| acetyl-CoA carboxylase, biotin carboxylase [Robiginitalea biformata
           HTCC2501]
          Length = 480

 Score = 65.5 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 80/221 (36%), Gaps = 19/221 (8%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+      +E   + +      A     DK+ +K+ V    +P+ P    
Sbjct: 76  AIHPGYGFLSENAAFARAVEAAGLVFIGPKPDAIQTMGDKLAAKKSVQPYDIPLVPGTDE 135

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS-----SSWNHGD 164
            +       +    I  P +IK   GG   G+ V++++  +   + ++     S++    
Sbjct: 136 PVSDADRIREIAAEIGYPILIKAAAGGGGKGMRVVEREADLHAQIERATSEAKSAFG-DG 194

Query: 165 QLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            + IE+YV     +   V+ D   +   +   +        K           A +  ++
Sbjct: 195 SVFIEKYVAAPRHIEIQVLCDTHGNAIHLFERECSIQRRHQK----VVEEAPSAVLTPEL 250

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            + + R A    +A    G    +FL D      ++LE+N 
Sbjct: 251 RERMGRAAVDVARACNYLGAGTVEFLLDA-DHNFYFLEMNT 290


>gi|330466969|ref|YP_004404712.1| carbamoyl-phosphate synthase, large subunit [Verrucosispora maris
           AB-18-032]
 gi|328809940|gb|AEB44112.1| carbamoyl-phosphate synthase, large subunit [Verrucosispora maris
           AB-18-032]
          Length = 1122

 Score = 65.5 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 55/287 (19%), Positives = 99/287 (34%), Gaps = 44/287 (15%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG      L   G +VS +         D +              V LV+A  +PD    
Sbjct: 29  SGTQACRVLRSEGIRVSLVNSNPATIMTDPEFADATYVEPITPEFVELVIAKERPDAVLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP------ 106
            L G    +  V      +LE   +    + I A     D+   K++V+  GV       
Sbjct: 89  TLGGQTALNTAVALHEAGVLEKYGVELIGANIDAIRRGEDRQLFKEIVAKAGVRLEVADP 148

Query: 107 ---VCPSILVNRFTMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN 161
              V  S + +      + +  +  P VI+P      LG  +   D+ +        + +
Sbjct: 149 EGLVPRSRVCHSMDEVRETVADLGLPVVIRPSFTMGGLGSGMAHNDEDLERIAGAGLAAS 208

Query: 162 HGDQLLIEQYVDG-IELTCGVMGDASL-DVTEIAVPKSDFYSYELKYSSLNSTHVLPAK- 218
              ++LIE+ V G  E    +M D     V   ++   D           +S  V PA  
Sbjct: 209 PVHEVLIEESVLGWKEYELELMRDRHDNVVVVCSIENIDPMGVHT----GDSVTVAPAMT 264

Query: 219 IPLDIYKEVQRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
           +    +++++ L     + +G   G     F  +P   ++  +E+N 
Sbjct: 265 LTDREFQQLRDLGIAVLREVGVDTGGCNIQFAINPADGRIVVIEMNP 311



 Score = 55.1 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/196 (14%), Positives = 76/196 (38%), Gaps = 7/196 (3%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYV 129
           L+   +P   +   +  L+ ++     +++  G+          +    +    I  P +
Sbjct: 678 LKDAGVPVVGTSPESIHLAEERGAFGSLLARAGLRAPEHGTATSYEEAKEIADEIGYPVL 737

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P       G+ ++  D ++   + +++  +    +L+++++ D IE+    + DA  +
Sbjct: 738 VRPSYVLGGRGMEIVYDDATLRDYIGRATDISPDHPVLVDRFLDDAIEIDVDALCDADGE 797

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           V    V   +       +S  +S  + P  +      +V+R      + IG RG+    +
Sbjct: 798 VYLGGV--MEHIEEAGIHSGDSSCALPPITLAGSHVAQVRRYTEAIARGIGVRGLLNVQY 855

Query: 249 LFDPLSRKVFWLEINV 264
                   ++ LE N 
Sbjct: 856 AL--KDDTLYVLEANP 869


>gi|260775356|ref|ZP_05884253.1| carbamoyl-phosphate synthase large chain [Vibrio coralliilyticus
           ATCC BAA-450]
 gi|260608537|gb|EEX34702.1| carbamoyl-phosphate synthase large chain [Vibrio coralliilyticus
           ATCC BAA-450]
          Length = 1076

 Score = 65.5 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 44/278 (15%), Positives = 96/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D +              V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIQWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV--PVCPS 110
            + G    +  +      +LE   +    +   A   + D+ R  + + S G+  P   +
Sbjct: 89  TMGGQTALNCALDLEKHGVLEEFGVEMIGATADAIDKAEDRSRFDKAMKSIGLECPRADT 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                       ++  P +I+P       G  +    +       +    +  ++LLI++
Sbjct: 149 AKTMEEAYKVLDMVGFPCIIRPSFTMGGTGGGIAYNKEEFEEICRRGLDLSPTNELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + + +   ++   D           +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKADNCIIVCSIENFDPMGIHT----GDSITVAPAQTLTDKEYQLM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P   ++  +E+N 
Sbjct: 265 RNASLAVLREIGVETGGSNVQFGINPKDGRMVIIEMNP 302



 Score = 65.1 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 33/197 (16%), Positives = 77/197 (39%), Gaps = 10/197 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           LE   +P   +   A   + D+ R +  V   G+    +  V      ++    I  P V
Sbjct: 653 LEAAGVPIIGTSPDAIDRAEDRERFQAAVDRLGLLQPENATVTTIEQAVEKSKEIGFPLV 712

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  +Q +     ++ S ++   +L+++++ D  E+    + D    
Sbjct: 713 VRPSYVLGGRAMEIVYDEQDLRRYFNEAVSVSNESPVLLDRFLDDATEVDIDAICDGERV 772

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           V    +   +    +    S +S   LPA  +  +I  +++         +G RG+  + 
Sbjct: 773 VIGGIMEHIE----QAGVHSGDSACSLPAYTLSQEIQDKMREQVEKLAFELGVRGLMNTQ 828

Query: 248 FLFDPLSRKVFWLEINV 264
           F       +V+ +E+N 
Sbjct: 829 FAV--KDNEVYLIEVNP 843


>gi|320009262|gb|ADW04112.1| Carbamoyl-phosphate synthase L chain ATP-binding protein
           [Streptomyces flavogriseus ATCC 33331]
          Length = 687

 Score = 65.5 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 44/212 (20%), Positives = 82/212 (38%), Gaps = 17/212 (8%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
           +G   E+      ++   + +    + A  L   K R+K+++++ GVP     L+     
Sbjct: 82  YGFLSENAGFARAVQDAGLLWVGPPVKAIELMASKTRAKELMAAAGVP-----LLAPVDP 136

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP----LDLLQSSSWNHGDQLLIEQYVD- 173
            S      P ++K   GG   G+ +++   S+P        ++ S     ++  E YV+ 
Sbjct: 137 GSATTADLPLLLKAAAGGGGRGMRIVRDLASLPGELTAASAEAVSAFGDGEVFAEPYVER 196

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAF 232
           G  +   VM D    V  +           L+          PA  +   + + +   A 
Sbjct: 197 GRHVEVQVMADGQGTVWALGT-----RDCSLQRRHQKVVEEAPAPGLDDGLRRRLHDAAV 251

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            A QA+G RG    +FL     R  ++LE+N 
Sbjct: 252 AAAQAVGYRGAGTVEFLVSAEGR-PWFLEMNT 282


>gi|257789952|ref|YP_003180558.1| acetyl-CoA carboxylase, biotin carboxylase [Eggerthella lenta DSM
           2243]
 gi|317489397|ref|ZP_07947909.1| acetyl-CoA carboxylase [Eggerthella sp. 1_3_56FAA]
 gi|257473849|gb|ACV54169.1| acetyl-CoA carboxylase, biotin carboxylase [Eggerthella lenta DSM
           2243]
 gi|316911504|gb|EFV33101.1| acetyl-CoA carboxylase [Eggerthella sp. 1_3_56FAA]
          Length = 449

 Score = 65.5 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 32/220 (14%), Positives = 67/220 (30%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     +    +I +            +K ++++ +   GVPV P    
Sbjct: 77  AIHPGYGFLSENSTFAKLCRENDIVFIGPAPEVLDRMGNKSQARKTMMEAGVPVVPGTKE 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS-----SWNHGD 164
            +      +     I  P +IK   GG   G+ +   +         +      ++    
Sbjct: 137 PVHHPEEALAMAREIGWPIMIKASSGGGGKGMRISHDEHDFSEQFSIAQRESVGAFGDNT 196

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             L    +    +   ++ D    V  +            K             +   + 
Sbjct: 197 MYLERCVLSPRHVEVQIIADTYGTVVALGERDCSVQRNHQKMI----EESPSPVMTERVR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            E+   A  A QA+G       +FL D      +++E+N 
Sbjct: 253 DEMLEAAVRAAQAVGYTSAGTIEFLLDDKLN-YYFMEMNT 291


>gi|219871725|ref|YP_002476100.1| carbamoylphosphate synthase large subunit (split gene in
           MJ)/ATP-dependent carboxylate-amine ligase
           domain-containing protein [Haemophilus parasuis SH0165]
 gi|219691929|gb|ACL33152.1| carbamoylphosphate synthase large subunit/ATP-ependent
           carboxylate-amine ligase domain-containing protein
           [Haemophilus parasuis SH0165]
          Length = 392

 Score = 65.5 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 30/186 (16%), Positives = 69/186 (37%), Gaps = 20/186 (10%)

Query: 93  KMRSKQVVSSCGVPVCPSILV--NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150
           K + K+V    G+ V    +   +         +  P +IKP  G  +     IK    +
Sbjct: 117 KAQMKEVFRKAGLKVAKGRVFKDDEDARKLAKELKFPVIIKPNSGVGASDTYKIKSADEL 176

Query: 151 PLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLN 210
                  ++     + ++E++++G  +T   + D   ++   +  +      E      +
Sbjct: 177 EAFFGYKNAH---VEYIMEEFIEGDIVTFDGLTDKDGNIVFYSSLEYSEVVLETVEKDND 233

Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR-----SDFLFDPLSRKVFWLEINVQ 265
             + +P +I  D+ K + +    A +        R      ++     + ++  LEIN +
Sbjct: 234 MFYYIPREIKEDLVK-LGQKCVDAFKV-------RERFFHFEYFRVKKTGELMPLEINCR 285

Query: 266 P--GMT 269
           P  G+T
Sbjct: 286 PPGGLT 291


>gi|194016801|ref|ZP_03055414.1| acetyl-CoA carboxylase, biotin carboxylase [Bacillus pumilus ATCC
           7061]
 gi|194011407|gb|EDW20976.1| acetyl-CoA carboxylase, biotin carboxylase [Bacillus pumilus ATCC
           7061]
          Length = 449

 Score = 65.5 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 89/220 (40%), Gaps = 16/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     + E   + +      A +    K  +++ +   GVP+ P    
Sbjct: 77  AIHPGYGFLAENADFAELCEECNVIFVGPTASAISKMGTKDVARETMKDAGVPIVPGSQG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL---LQSSSWNHGDQ- 165
            +      + +   I  P +IK   GG   GI V + ++ +   +    Q ++ N G+  
Sbjct: 137 IVKDLDDAVSTAASIGYPVIIKATAGGGGKGIRVARTEEELINGVTITQQEAAQNFGNPG 196

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E++++    +   V+ D   +   +        S + +   L      PA +  DI 
Sbjct: 197 VYLEKFIEDFRHVEIQVLADQHGNTIHLGERD---CSIQRRMQKLLEETPSPA-LNADIR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +++   A  A +A+   G    +F++D    K +++E+N 
Sbjct: 253 EQMGEAAVKAAEAVEYTGAGTVEFIYDYNEEKFYFMEMNT 292


>gi|156057445|ref|XP_001594646.1| conserved hypothetical protein [Sclerotinia sclerotiorum 1980]
 gi|154702239|gb|EDO01978.1| conserved hypothetical protein [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 612

 Score = 65.5 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 56/291 (19%), Positives = 106/291 (36%), Gaps = 41/291 (14%)

Query: 6   GGIS----SEREVSLSSGKACASALEDAGF--------------------KVSQIDVDRS 41
           GG+S     E + S   G     AL++AG                     +V  + V   
Sbjct: 98  GGLSIGQAGEFDYS---GSQALKALKEAGVASVLINPNIATIQTAHVLTDEVYYLPVTPE 154

Query: 42  -VGLVLAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRS 96
            V  V+   +PD  F    G    +  VQ     I E   +    + I     S D+   
Sbjct: 155 YVTYVIERERPDGIFLTFGGQTALNLGVQMERMGIFERYGVKVLGTSIKTLETSEDRDLF 214

Query: 97  KQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154
            + +    +P+  S+ V+     +++   I  P +++       LG      ++ +    
Sbjct: 215 AKALGEINIPIAQSVAVSTVDEALEAAKGIGYPIIVRAAYALGGLGSGFANNEEELR--N 272

Query: 155 LQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTH 213
           + S S     Q+L+E+ + G  E+   V+ DAS +   I V   + +   L   + +S  
Sbjct: 273 MASRSLTLSPQILVEKSLKGWKEVEYEVVRDASNN--CITVCNMENFD-PLGIHTGDSIV 329

Query: 214 VLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
           V P++ +  + Y  ++  A    + +G  G     +   P       +E+N
Sbjct: 330 VAPSQTLSDEEYHMLRSAAIKIVRHLGVVGECNVQYALQPDGLDYRVIEVN 380


>gi|124025600|ref|YP_001014716.1| carbamoyl phosphate synthase large subunit [Prochlorococcus marinus
           str. NATL1A]
 gi|123960668|gb|ABM75451.1| carbamoyl-phosphate synthase, large subunit [Prochlorococcus
           marinus str. NATL1A]
          Length = 1102

 Score = 65.5 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 55/279 (19%), Positives = 99/279 (35%), Gaps = 36/279 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVDRS------------VGLVLAHLKPDLAFN 56
           SG     AL   GF+V  +         D + +            V  ++   +PD    
Sbjct: 29  SGTQACKALRGEGFEVILVNSNPASIMTDPETANRTYVEPLTASVVEQIIKIERPDALLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  V+     ILE   I    + + A   + D+   K  + + GV VCPS +
Sbjct: 89  TMGGQTALNISVELAESGILEKYNIELIGADLNAIKKAEDRNLFKIAMKNIGVDVCPSGI 148

Query: 113 ---VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
              +    +    + S P +I+P       G  +                 +   Q+LIE
Sbjct: 149 ASNLQEAVIVGNEISSFPKIIRPAFTLGGSGGGIAYNQDEFLELCKTGLDASPVSQILIE 208

Query: 170 QYVDG-IELTCGVMGD-ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKE 226
           + + G  E    VM D +   V   ++   D           +S  V PA+ +    Y+ 
Sbjct: 209 KSLLGWKEFELEVMRDLSDNVVIICSIENVDPMGVHT----GDSITVAPAQTLTDREYQR 264

Query: 227 VQRLAFLAHQAIG-CRGISRSDFLFDPLSRKVFWLEINV 264
           ++  +    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 LRDYSISIIREIGVATGGSNIQFAINPNNGEIIVIEMNP 303



 Score = 47.8 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/220 (14%), Positives = 80/220 (36%), Gaps = 14/220 (6%)

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGSS 138
            +  ++  L+ D+ +  +V+    +    + L   F   +   + +  P V++P      
Sbjct: 687 GTSPISIDLAEDREQFDKVLRRLDIRQPKNGLARTFEESLSVANKVGYPLVVRPSYVLGG 746

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD 198
             + ++ +   +   + ++ +      +LI+QY++       V  DA  DV++  V    
Sbjct: 747 RAMEIVYEQDELERYIKEAVNVEPDHPILIDQYLEN---AIEVDVDALCDVSKNVVIGGL 803

Query: 199 FYSYELKYSS-LNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF---DPL 253
               E       +S   LP   + ++  K ++         +   G+    F     D  
Sbjct: 804 MEHIEPAGIHSGDSACCLPSITLSVESIKTIKHWTKSLAIELDVVGLINLQFAVKRDDEG 863

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +  V+ +E N +   T     P ++   G    ++   ++
Sbjct: 864 NEIVYIIEANPRASRT----VPFVSKATGVPLAKIATQLL 899


>gi|329767647|ref|ZP_08259167.1| carbamoyl-phosphate synthase large subunit [Gemella haemolysans
           M341]
 gi|328839074|gb|EGF88660.1| carbamoyl-phosphate synthase large subunit [Gemella haemolysans
           M341]
          Length = 1058

 Score = 65.5 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 26/223 (11%), Positives = 76/223 (34%), Gaps = 14/223 (6%)

Query: 68  VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQHLIS 125
           + A LE   +    + +     + D+ + ++++    +P             + +   I 
Sbjct: 642 LAAKLEKHGVKILGTALEEIDNAEDRDKFEELLHKLDIPQPLGKTAFDVETAVKNAEEIG 701

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            P +++P        + ++ ++  +   +  +        +L ++Y+ G E+    + D 
Sbjct: 702 YPVLVRPSYVLGGRAMEIVYEEAELRRYMKTAVKLTPEHPVLTDRYLVGREIEVDAISDG 761

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGIS 244
              +    +   +           +S  V P + +      ++        + +   G+ 
Sbjct: 762 ETVIIPGIMEHIERAGVHS----GDSIAVYPPQTLTEGEKAKLIEYTIKLAKGLNIVGLL 817

Query: 245 RSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEMAAYAG 282
              ++      +VF LE+N       P ++ ++  P     AG
Sbjct: 818 NIQYVISK--GEVFVLEVNPRSSRTVPFLSKITGVPMAKLAAG 858



 Score = 62.4 bits (151), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 46/274 (16%), Positives = 104/274 (37%), Gaps = 33/274 (12%)

Query: 20  KACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNVL 58
           +AC S L + G++V  ++        D+ +                ++   +PD     L
Sbjct: 32  QACLS-LREEGYEVILVNSNPATIMTDKEIADKVYMEPLTLEFVSKIIRKERPDALLPTL 90

Query: 59  HGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
            G  G +  V+     IL+   +    + + +   + D+   + +++    PV  S ++ 
Sbjct: 91  GGQVGLNLAVELHKSGILDKYGVELLGTKLSSIEQAEDRELFRDLMNELNEPVPESAIIT 150

Query: 115 RFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                 +    I  P +++P       G  +    + +   +     ++   Q L+E+ +
Sbjct: 151 TLEEAREFVAEIGYPVIVRPAFTMGGTGGGICYDKKDLEEIVSSGLHYSPVTQCLLEKSI 210

Query: 173 DG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRL 230
            G  E+   VM D++   T I V   +     +   + +S  V P++ +    Y  ++ +
Sbjct: 211 AGFKEIEYEVMRDSND--TAIVVCNMENID-PVGIHTGDSVVVAPSQTLTDREYHMLRNV 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +    +A+   G        DP S K + +E+N 
Sbjct: 268 SLKIIRALKIEGGCNVQLALDPNSFKYYIIEVNP 301


>gi|322703597|gb|EFY95203.1| acetyl-/propionyl-coenzyme A carboxylase alpha chain [Metarhizium
           anisopliae ARSEF 23]
          Length = 1238

 Score = 65.5 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 31/237 (13%), Positives = 73/237 (30%), Gaps = 18/237 (7%)

Query: 39  DRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQ 98
             ++  +      D  F   +G   E+      +    I +      +      K  ++ 
Sbjct: 72  GEAILDICKKTDADAVFPG-YGFLSENAEFARAVSSAGIIFVGPSSASIKAMGLKHEARA 130

Query: 99  VVSSCGVPVCPSILVNRFTMD---SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
           +  +  VPV P   +     +   +   +  P ++K   GG  +G+     +  +     
Sbjct: 131 IAEAANVPVVPGTQLLSSAAEVVKAARDLGFPVMLKATGGGGGMGLQACDTEIEVEKAFA 190

Query: 156 -----QSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLN 210
                 S+ + +    L + Y     +   V G+  + V      +        K     
Sbjct: 191 TVQSRASTLFKNSGVFLEKYYPRSRHIEVQVAGNGEI-VIAFGERECSLQRRHQK----- 244

Query: 211 STHVLPAKIPL---DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
                P+        + + + + A      +  + +   +FL D  +   F+LE+N 
Sbjct: 245 VIEECPSPFVERHSGLRERMLQAAINYAARLKYKSVGTVEFLVDDETADFFFLEMNT 301


>gi|321314854|ref|YP_004207141.1| carbamoyl phosphate synthase large subunit [Bacillus subtilis BSn5]
 gi|320021128|gb|ADV96114.1| carbamoyl phosphate synthase large subunit [Bacillus subtilis BSn5]
          Length = 1030

 Score = 65.5 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 43/229 (18%), Positives = 86/229 (37%), Gaps = 15/229 (6%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--QHLISPPYV 129
           LE   I    +      +  D+ +  Q++   G+      +       +     I  P +
Sbjct: 650 LEKAGITLLGTSFQTLDVLEDRDQFYQLLDELGLKHAKGEIAYTKEEAASKASEIGYPVL 709

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           I+P      +G+I++     +   L    S  +   +LI+QYV G E+   ++ D     
Sbjct: 710 IRPSYVIGGMGMIIVDSQAQLSQLLNDEDSMPY--PILIDQYVSGKEVEIDLISDGE--- 764

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
            E+ +P    +       S +S  +LP   I   + + ++  A    + +  +GI    F
Sbjct: 765 -EVFIPTYTEHIERAGVHSGDSFAILPGPSITSGLQQGMKDAAQKIARKLSFKGIMNIQF 823

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           + D  +  +  LE+N +   T     P ++   G     L   ++  AS
Sbjct: 824 VID--NGNILVLEVNPRASRT----VPVVSKVMGVPMIPLATRLLAGAS 866



 Score = 62.1 bits (150), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 46/286 (16%), Positives = 106/286 (37%), Gaps = 33/286 (11%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQID---------------------VDRSVGLV 45
           G ++E + S   G     AL++ G++V  ++                        S+  +
Sbjct: 21  GQAAEFDYS---GTQGCIALKEEGYRVILVNSNPATIMTDEAFADEIYFEPLTAESLTAI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   +PD     L G    +  V+     +L+   +    + +       D+ + + +++
Sbjct: 78  IKKERPDGLLANLGGQTALNLAVELEETGVLKEHGVKLLGTSVETIQKGEDREKFRSLMN 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
               PV  S +V+     +     I  P +I+P       G  +    ++    + Q+  
Sbjct: 138 ELKQPVPESEIVDNEADALHFAESIGFPVIIRPAYTLGGKGGGIAPDKEAFTAMIKQALL 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +  +Q L+E+ + G  E+   VM D++   T I V   +       ++  +        
Sbjct: 198 ASPINQCLVEKSIAGFKEIEYEVMRDSN--NTCITVCNMENIDPVGVHTGDSIVVAPSQT 255

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +  + Y+ ++  +     A+   G     F  DP S++ + +E+N 
Sbjct: 256 LTDEDYQMLRTASLTIISALDVVGGCNIQFALDPFSKQYYVIEVNP 301


>gi|315650674|ref|ZP_07903730.1| acetyl-CoA carboxylase, biotin carboxylase [Eubacterium saburreum
           DSM 3986]
 gi|315487051|gb|EFU77377.1| acetyl-CoA carboxylase, biotin carboxylase [Eubacterium saburreum
           DSM 3986]
          Length = 448

 Score = 65.5 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 78/220 (35%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  FG   E+     +   + + +        A   DK +++  +   G+PV P    
Sbjct: 77  AIHPGFGFLSENEKFARLCTEVGVKFIGPKSETIAKLGDKAKARDTMQKAGIPVIPGTDG 136

Query: 114 NRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL----DLLQSSSWNHGDQ 165
           +   +D        I  P +IK   GG   G+ V + +            ++      D 
Sbjct: 137 SVKDIDEALKLAKTIGFPVMIKAALGGGGKGMRVSRSEADFAENFMTAKAEALKGFSDDS 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + IE+Y++    +   +M D+  +V  +            K             +  ++ 
Sbjct: 197 MYIEKYIERPRHIEFQIMADSYGNVVHLGERDCSIQRRHQKVL----EEAPSIFLDENLR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +++   A  A +A G       +FL D   R  +++E+N 
Sbjct: 253 EKMGNAAVSAAKAAGYENAGTIEFLVDKH-RNFYFMEMNT 291


>gi|221308965|ref|ZP_03590812.1| carbamoyl phosphate synthase large subunit [Bacillus subtilis
           subsp. subtilis str. 168]
 gi|221313289|ref|ZP_03595094.1| carbamoyl phosphate synthase large subunit [Bacillus subtilis
           subsp. subtilis str. NCIB 3610]
 gi|221318213|ref|ZP_03599507.1| carbamoyl phosphate synthase large subunit [Bacillus subtilis
           subsp. subtilis str. JH642]
 gi|221322487|ref|ZP_03603781.1| carbamoyl phosphate synthase large subunit [Bacillus subtilis
           subsp. subtilis str. SMY]
          Length = 1030

 Score = 65.5 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 43/229 (18%), Positives = 86/229 (37%), Gaps = 15/229 (6%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--QHLISPPYV 129
           LE   I    +      +  D+ +  Q++   G+      +       +     I  P +
Sbjct: 650 LEKAGITLLGTSFQTLDVLEDRDQFYQLLDELGLKHAKGEIAYTKEEAASKASEIGYPVL 709

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           I+P      +G+I++     +   L    S  +   +LI+QYV G E+   ++ D     
Sbjct: 710 IRPSYVIGGMGMIIVDSQAQLSQLLNDEDSMPY--PILIDQYVSGKEVEIDLISDGE--- 764

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
            E+ +P    +       S +S  +LP   I   + + ++  A    + +  +GI    F
Sbjct: 765 -EVFIPTYTEHIERAGVHSGDSFAILPGPSITSGLQQGMKDAAQKIARKLSFKGIMNIQF 823

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           + D  +  +  LE+N +   T     P ++   G     L   ++  AS
Sbjct: 824 VID--NGNILVLEVNPRASRT----VPVVSKVMGVPMIPLATRLLAGAS 866



 Score = 62.1 bits (150), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 46/286 (16%), Positives = 106/286 (37%), Gaps = 33/286 (11%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQID---------------------VDRSVGLV 45
           G ++E + S   G     AL++ G++V  ++                        S+  +
Sbjct: 21  GQAAEFDYS---GTQGCIALKEEGYRVILVNSNPATIMTDEAFADEIYFEPLTAESLTAI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   +PD     L G    +  V+     +L+   +    + +       D+ + + +++
Sbjct: 78  IKKERPDGLLANLGGQTALNLAVELEETGVLKEHGVKLLGTSVETIQKGEDREKFRSLMN 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
               PV  S +V+     +     I  P +I+P       G  +    ++    + Q+  
Sbjct: 138 ELKQPVPESEIVDNEADALHFAESIGFPVIIRPAYTLGGKGGGIAPDKEAFTAMIKQALL 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +  +Q L+E+ + G  E+   VM D++   T I V   +       ++  +        
Sbjct: 198 ASPINQCLVEKSIAGFKEIEYEVMRDSN--NTCITVCNMENIDPVGVHTGDSIVVAPSQT 255

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +  + Y+ ++  +     A+   G     F  DP S++ + +E+N 
Sbjct: 256 LTDEDYQMLRTASLTIISALDVVGGCNIQFALDPFSKQYYVIEVNP 301


>gi|114798818|ref|YP_759373.1| carbamoyl-phosphate synthase large subunit [Hyphomonas neptunium
           ATCC 15444]
 gi|114738992|gb|ABI77117.1| carbamoyl-phosphate synthase, large subunit [Hyphomonas neptunium
           ATCC 15444]
          Length = 1092

 Score = 65.5 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 34/211 (16%), Positives = 79/211 (37%), Gaps = 14/211 (6%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPL 133
           ++P   +   +  L+ D+ +   ++   G+   PS +           + I  P +++P 
Sbjct: 681 QVPILGTSPASIDLAEDREQFAALLDKLGIQQAPSRVARSVEEAEVKANEIGYPVMLRPS 740

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTC-GVMGDASLDVTE 191
                  + + + D+ +     ++   +    L I++Y+ D IE+    +    ++ V  
Sbjct: 741 FVLGGRAMEIARNDEDLRKFAAEALRVSGDASLFIDRYLSDAIEVDVDAICDGKTVHVAG 800

Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
           I     +       +S  ++  + P  +  D+ K +   A     A+  RG+    F   
Sbjct: 801 I----MEHIEEAGVHSGDSACALPPFTLSQDLQKRLGEQAAQLAMALNVRGLINIQFAV- 855

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAG 282
               +++ LE N +   T     P +A   G
Sbjct: 856 -KGEEIYVLEANPRASRT----VPFVAKAVG 881



 Score = 54.0 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 47/296 (15%), Positives = 99/296 (33%), Gaps = 53/296 (17%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL+  G++V  +         D +              V  ++A  +PD    
Sbjct: 29  SGVQAVKALKAEGYRVILVNSNPATIMTDPELADATYIEPILPEVVEKIIAAERPDALLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      ILE   +    +   A  ++ D+   ++ +   G+    + +
Sbjct: 89  TMGGQTALNCALDLHYAGILEKYGVELIGAKAEAIEMAEDRKLFREAMDRLGLENPRAAI 148

Query: 113 VN--------------------RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152
           +                     R  MD+   +  P +I+P       G  +    +    
Sbjct: 149 IASPEIRGEDGKIKSYDRITGLRQAMDALETVGLPAIIRPAFTLGGTGGGIAYNVEEYEE 208

Query: 153 DLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKS-DFYSYELKYSSLN 210
                 + +   Q+LI++ + G  E    V+ D + +   I   ++ D           +
Sbjct: 209 ICRSGLAASPNAQILIDESLLGWKEYEMEVVRDTADNCIIICSIENIDPMGVHT----GD 264

Query: 211 STHVLPA-KIPLDIYKEVQRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           S  V PA  +    Y+ ++  +    + IG   G S   F  +P   ++  +E+N 
Sbjct: 265 SITVAPALTLTDKEYQVMRNASIAVLREIGVETGGSNVQFAVNPKDGRLIVIEMNP 320


>gi|110597169|ref|ZP_01385458.1| Carbamoyl-phosphate synthase L chain, ATP-binding [Chlorobium
           ferrooxidans DSM 13031]
 gi|110341360|gb|EAT59825.1| Carbamoyl-phosphate synthase L chain, ATP-binding [Chlorobium
           ferrooxidans DSM 13031]
          Length = 397

 Score = 65.5 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 66/165 (40%), Gaps = 8/165 (4%)

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL--ISPPYVIKPLKGG 136
           ++   + A+ +S++K   +Q +   G+ V   +        ++H   I  P VIKP+   
Sbjct: 92  FSSISVEAADVSVNKWLQRQRMKEAGLSVPAFMPFRFPDEAARHAAEIGFPVVIKPIDSA 151

Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC-GVMGDASLDVTEIAVP 195
            S G+  ++  + +     ++   +     L+E+YV+G+E++  G + +       I+  
Sbjct: 152 GSRGVRFVRSAEEVMQAATEALDASRSKIGLVEEYVEGLEVSVEGFVVNGKFSGICISEK 211

Query: 196 KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
                     Y    + H  P  +  +  + +   A  A  A G 
Sbjct: 212 SR----TNPPYLLDMAVHF-PDSLSTEEQRAIHSAAAKAVSACGL 251


>gi|120599959|ref|YP_964533.1| phosphoribosylglycinamide formyltransferase 2 [Shewanella sp.
           W3-18-1]
 gi|171704634|sp|A1RMT4|PURT_SHESW RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|120560052|gb|ABM25979.1| phosphoribosylglycinamide formyltransferase 2 [Shewanella sp.
           W3-18-1]
          Length = 391

 Score = 65.5 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 46/278 (16%), Positives = 101/278 (36%), Gaps = 47/278 (16%)

Query: 19  GKACASALEDAGFKVSQID--------------------VDRSVGLVLAHLKPDLAFNVL 58
           GK  A  L+  G +V  +D                      +++  ++   KP L    +
Sbjct: 22  GKEVAIELQRLGVEVIGVDRYANAPAMQVAHRSHVINMLDAKALRAIIELEKPHLVIPEI 81

Query: 59  HGNFGEDGLVQAILELL--EIPYTHSGILASALSMDKM-RSKQVVSSCGVPVCPSILVNR 115
                E    Q ++E+    +        A+ L+MD+    +    + G+P  P    + 
Sbjct: 82  -----EAIATQTLVEMEAEGVNII-PTARATKLTMDREGIRRLAAETLGLPTSPYFFCDT 135

Query: 116 FTMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLD--LLQSSSWNHGDQLLIEQY 171
            T  +Q +  I  P V+KP+   S  G  VI+            Q      G ++++E +
Sbjct: 136 ETEFNQAIREIGVPCVVKPVMSSSGKGQSVIRDIAQSNKAWQYAQEGGRAGGGRVIVEGF 195

Query: 172 VDGIELTCGVMGDASLDVTEIAVP---KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           V   +    ++  ++++      P   + +   Y   +         P  +  ++  + Q
Sbjct: 196 VP-FDYEITLLTVSAVNGIHFCAPIGHRQEDGDYRESW--------QPQAMSDEVLAKSQ 246

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
            +A    +A+G  G+   +        +V++ E++ +P
Sbjct: 247 AIASKVVEALGGYGLFGVELFV--KGNEVYFSEVSPRP 282


>gi|313677288|ref|YP_004055284.1| acetyl-CoA carboxylase, biotin carboxylase [Marivirga tractuosa DSM
           4126]
 gi|312943986|gb|ADR23176.1| acetyl-CoA carboxylase, biotin carboxylase [Marivirga tractuosa DSM
           4126]
          Length = 451

 Score = 65.5 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 32/220 (14%), Positives = 79/220 (35%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H  +G   E+     +     I +  +     +   DK  +K  + + GVP  P    
Sbjct: 77  AIHPGYGFLSENAEFSKVCGEYGIKFIGADPEMISKMGDKATAKATMKAAGVPTIPGSEG 136

Query: 114 NRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
              ++D        +  P ++K   GG   G+ ++  ++           ++ +    + 
Sbjct: 137 LLESIDEGKKIAKDMGYPVILKATAGGGGKGMRIVNNEEEFKKAWDSARQEAGASFGNEG 196

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           L +E++V+    +   ++GD +     ++           K             +  ++ 
Sbjct: 197 LYLEKFVEEPRHVEIQIVGDKNGRACHLSERDCSIQRRHQK----LIEETPCPVMTDELR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             + + A    +A+G  G    +FL D  +   +++E+N 
Sbjct: 253 DAMGKAAIAGAEAVGYEGAGTIEFLLDKHNN-FYFMEMNT 291


>gi|241889438|ref|ZP_04776739.1| carbamoyl-phosphate synthase, large subunit [Gemella haemolysans
           ATCC 10379]
 gi|241863981|gb|EER68362.1| carbamoyl-phosphate synthase, large subunit [Gemella haemolysans
           ATCC 10379]
          Length = 1058

 Score = 65.5 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 26/223 (11%), Positives = 76/223 (34%), Gaps = 14/223 (6%)

Query: 68  VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQHLIS 125
           + A LE   +    + +     + D+ + ++++    +P             + +   I 
Sbjct: 642 LAAKLEKHGVKILGTALEEIDNAEDRDKFEELLHKLDIPQPLGKTAFDVETAVKNAEEIG 701

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            P +++P        + ++ ++  +   +  +        +L ++Y+ G E+    + D 
Sbjct: 702 YPVLVRPSYVLGGRAMEIVYEEAELRRYMKTAVKLTPEHPVLTDRYLVGREIEVDAISDG 761

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGIS 244
              +    +   +           +S  V P + +      ++        + +   G+ 
Sbjct: 762 ETVIIPGIMEHIERAGVHS----GDSIAVYPPQTLTEGEKAKLIEYTIKLAKGLNIVGLL 817

Query: 245 RSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEMAAYAG 282
              ++      +VF LE+N       P ++ ++  P     AG
Sbjct: 818 NIQYVISK--GEVFVLEVNPRSSRTVPFLSKITGVPMAKLAAG 858



 Score = 64.4 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 46/274 (16%), Positives = 105/274 (38%), Gaps = 33/274 (12%)

Query: 20  KACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNVL 58
           +AC S L + G++V  ++        D+ +                ++   +PD     L
Sbjct: 32  QACLS-LREEGYEVILVNSNPATIMTDKEIADKVYMEPLTLEFVSKIIRKERPDALLPTL 90

Query: 59  HGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
            G  G +  V+     IL+   +    + + +   + D+   + +++    PV  S ++ 
Sbjct: 91  GGQVGLNLAVELHKSGILDKYGVELLGTKLSSIEQAEDRELFRDLMNELNEPVPESAIIT 150

Query: 115 RFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                 +    I  P +++P       G  +   ++ +   +     ++   Q L+E+ +
Sbjct: 151 TLDEAREFVAEIGYPVIVRPAFTMGGTGGGICYNEKDLEEIVSSGLHYSPVTQCLLEKSI 210

Query: 173 DG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRL 230
            G  E+   VM D++   T I V   +     +   + +S  V P++ +    Y  ++ +
Sbjct: 211 AGFKEIEYEVMRDSND--TAIVVCNMENID-PVGIHTGDSVVVAPSQTLTDREYHMLRNV 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +    +A+   G        DP S K + +E+N 
Sbjct: 268 SLKIIRALKIEGGCNVQLALDPDSFKYYIIEVNP 301


>gi|117618944|ref|YP_857231.1| carbamoyl phosphate synthase large subunit [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
 gi|117560351|gb|ABK37299.1| carbamoyl-phosphate synthase, large subunit [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
          Length = 1078

 Score = 65.5 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 29/196 (14%), Positives = 74/196 (37%), Gaps = 8/196 (4%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYV 129
           LE   +P   +   A   + D+ R +  V   G+    +  V        +   I+ P V
Sbjct: 653 LEANGVPVIGTSPDAIDRAEDRERFQSAVERLGLKQPENGTVTALEQAVLTAERITYPLV 712

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  +Q +     ++ S ++   +L+++++ D  E+    + D +  
Sbjct: 713 VRPSYVLGGRAMEIVYDEQDLRRYFAEAVSVSNESPVLLDRFLDDATEVDVDAICDGTDV 772

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           V    +   +       +S  ++  + P  +   I  E++         +G  G+    F
Sbjct: 773 VIGGIMEHIEQAGI---HSGDSACSLPPYTLSKAIQDEMREQVRKLALELGVVGLMNVQF 829

Query: 249 LFDPLSRKVFWLEINV 264
                  +++ +E+N 
Sbjct: 830 AV--KDNEIYLIEVNP 843



 Score = 59.4 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 44/278 (15%), Positives = 96/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D +              V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPITWEVVREIIKKERPDAILP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      +L    +    +   A   + D+ R  + + S G+    + +
Sbjct: 89  TMGGQTALNCALDLEKHGVLAEFGVEMIGATADAIDKAEDRSRFDKAMRSIGLECPRAGI 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +        Q ++  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHNMEEAWGVQQMVGFPCIIRPSFTMGGSGGGIAYNPEEFVEICERGLDLSPTKELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + + +   A+   D           +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDRNDNCIIVCAIENFDPMGIHT----GDSITVAPAQTLTDKEYQLM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P   ++  +E+N 
Sbjct: 265 RNASMAVLREIGVETGGSNVQFGINPKDGRMVIIEMNP 302


>gi|78048923|ref|YP_365098.1| ribosomal protein S6 modification protein [Xanthomonas campestris
           pv. vesicatoria str. 85-10]
 gi|84029434|sp|Q3BQ65|RIMK_XANC5 RecName: Full=Ribosomal protein S6 modification protein
 gi|78037353|emb|CAJ25098.1| ribosomal protein S6 modification protein [Xanthomonas campestris
           pv. vesicatoria str. 85-10]
          Length = 295

 Score = 65.5 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 43/204 (21%), Positives = 92/204 (45%), Gaps = 23/204 (11%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS----PP 127
           LE +   YT +   A   S DK+R+ Q++++ G+ +  ++  +    D+Q L+S    PP
Sbjct: 80  LEFMG-TYTPNPSDAILRSRDKLRAHQLLAAQGIDMPVTVFGDNPD-DTQDLLSMLGPPP 137

Query: 128 YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV---DGIELTCGVMGD 184
           +V+K L  G+    +++ +  S    ++++    + +  ++++++   +G +L C V+GD
Sbjct: 138 HVVK-LNEGAQGAGVILTEKASASRGVVEALRGLYAN-FIVQEFIGEAEGADLRCFVVGD 195

Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244
             +        + DF S         +  V  A       ++ Q +A  + +A+G     
Sbjct: 196 KVVAAMRRQAAEGDFRSNLH---LGGTAAVTEA------TEQEQEVAVRSARALGLTVAG 246

Query: 245 RSDFLFDPLSRKVFWLEINVQPGM 268
             D +          LE+N  PG+
Sbjct: 247 -VDLIRSKRG--PLVLEVNSTPGL 267


>gi|323490427|ref|ZP_08095639.1| phosphoribosylaminoimidazole carboxylase ATPase subunit
           [Planococcus donghaensis MPA1U2]
 gi|323395926|gb|EGA88760.1| phosphoribosylaminoimidazole carboxylase ATPase subunit
           [Planococcus donghaensis MPA1U2]
          Length = 374

 Score = 65.5 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 36/207 (17%), Positives = 79/207 (38%), Gaps = 15/207 (7%)

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQ 121
           E+  V+ + +L EI Y   G     ++ +++  KQ +S  GV V   I  + F    +  
Sbjct: 78  ENIDVEGLSKLAEIAYVPQGSELIRVTQNRVVEKQAISEAGVVVADYITASSFGELKEKS 137

Query: 122 HLISPPYVIKPLKGG-SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTC 179
             +S P+V+K  +GG    G   +   + + L     +      + + E +V+   E++ 
Sbjct: 138 SKLSFPFVVKTARGGYDGKGQQTVSSIEGLSLAEGLFA----NGECVAEAFVEFTKEISV 193

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
            +  +   +   + + ++    + L         ++PA+I      E +R A      + 
Sbjct: 194 IIQRNVYGETAILPIGENIHKDHIL------HETIVPARIDKKTIDEAKRAAEKIAAHLD 247

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQP 266
             G    +         +   E+  +P
Sbjct: 248 MIGTLAVEMFVLE-DGGIIVNELAPRP 273


>gi|224010828|ref|XP_002294371.1| pyruvate carboxylase-like protein [Thalassiosira pseudonana
           CCMP1335]
 gi|220969866|gb|EED88205.1| pyruvate carboxylase-like protein [Thalassiosira pseudonana
           CCMP1335]
          Length = 1155

 Score = 65.5 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 40/242 (16%), Positives = 82/242 (33%), Gaps = 23/242 (9%)

Query: 35  QIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSM 91
            +D+D+ +  +      D     +H  +G   E            I +    +       
Sbjct: 58  YLDIDQ-IIKIAKDSGVD----AIHPGYGFLSESPQFAQACADAGITFVGPTVENLNTFS 112

Query: 92  DKMRSKQVVSSCGVPVCPS---ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQ 148
           DK  ++    + GVPV P    +  N         +  P +IK   GG   G+ V++  +
Sbjct: 113 DKTSARNAAIAAGVPVVPGSDALKTNDEVNAFVDEVGLPVIIKAAMGGGGKGMRVVRNRE 172

Query: 149 SI----PLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYE 203
            +         ++ +      + +E++V     +   ++GD   +V  +           
Sbjct: 173 DLIPFFESASSEALASFGDGSVFVERFVYRPRHIEIQIIGDGEGNVIHLWERDCSIQRRH 232

Query: 204 LKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
            K        + PA  +P  + KE+   A         +     +FL D   R  +++E+
Sbjct: 233 QK-----VIEMAPAWSLPDSLRKELHDYAVNLTSQAKYKNAGTVEFLVDQELR-PYFIEV 286

Query: 263 NV 264
           N 
Sbjct: 287 NP 288


>gi|118473801|ref|YP_889520.1| phosphoribosylglycinamide formyltransferase 2 [Mycobacterium
           smegmatis str. MC2 155]
 gi|171472985|sp|A0R2Y2|PURT_MYCS2 RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|118175088|gb|ABK75984.1| phosphoribosylglycinamide formyltransferase 2 [Mycobacterium
           smegmatis str. MC2 155]
          Length = 400

 Score = 65.5 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 45/287 (15%), Positives = 91/287 (31%), Gaps = 51/287 (17%)

Query: 19  GKACASALEDAGFKVSQIDVDRS--------------------VGLVLAHLKPDLAFNVL 58
           G+    AL+  G +   +D   +                    +  ++   +PDL    +
Sbjct: 24  GREVLIALQRLGVETIAVDRYENAPGHQVAHHARTIAMSDPDQLRALIEAERPDLVVPEI 83

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKM-RSKQVVSSCGVPVCPSIL---VN 114
                    V   LE   +        A+ L+MD+    +    + GVP  P      + 
Sbjct: 84  EAIA---TPVLEALEAEGVTTVIPTARATRLTMDREGIRRLAAETLGVPTSPYRFCDSLA 140

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH--GDQLLIEQYV 172
                    I  P V+KP+   S  G   I     +      + +       ++++E +V
Sbjct: 141 ELQAAIDDEIGYPCVVKPVMSSSGKGQSKINGPDEVAAAWEYAMAGGRVSHTRIIVEGFV 200

Query: 173 DGIELTCGVM--------GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           D  +    ++        G+ +    E    +     Y   +         P  +P    
Sbjct: 201 D-FDYEITLLTVRARGADGEIATQFCEPIGHRQVGGDYVESW--------QPHPMPATAL 251

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP---GM 268
           +  Q +A      +G +GI   +        +V++ E++ +P   GM
Sbjct: 252 ERAQEIAGAVTGNLGGQGIFGVELFV--KGDQVWFSEVSPRPHDTGM 296


>gi|332521192|ref|ZP_08397650.1| pyruvate carboxylase [Lacinutrix algicola 5H-3-7-4]
 gi|332043285|gb|EGI79482.1| pyruvate carboxylase [Lacinutrix algicola 5H-3-7-4]
          Length = 1150

 Score = 65.5 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 35/222 (15%), Positives = 83/222 (37%), Gaps = 21/222 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+           I +            DK+ +K+V   C VP+  S   
Sbjct: 79  AIHPGYGFLSENSEFARQCAANGIIFIGPDPKVMDALGDKITAKKVAVKCNVPIIESNKK 138

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS-----SWNHGD 164
            +   +  +     I  P ++K   GG   G+ +I+K + + L+   +      ++   D
Sbjct: 139 KLTSLKVALSQAETIGYPIMLKAASGGGGRGMRIIRKAEDLELNFDSARNEALNAFG-DD 197

Query: 165 QLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLD 222
            + +E+YV D   +   ++ D   ++              ++        + P   +  +
Sbjct: 198 TMFLEKYVEDPKHIEVQIVADNHGNI-----RHLHERDCSVQRRHQKVVEIAPSHNVSEN 252

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +++ + A    + +    I   +FL D     ++++E+N 
Sbjct: 253 VKQQLYKYAVSIAKEVNYNNIGTVEFLVDREDN-IYFIEVNP 293


>gi|315302583|ref|ZP_07873399.1| pyruvate carboxylase [Listeria ivanovii FSL F6-596]
 gi|313629047|gb|EFR97364.1| pyruvate carboxylase [Listeria ivanovii FSL F6-596]
          Length = 1146

 Score = 65.5 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 35/243 (14%), Positives = 82/243 (33%), Gaps = 25/243 (10%)

Query: 35  QIDVDRSVGLVLAHLKPDLAFNVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSM 91
            +D+  ++  +      D     +H  +G   E+       E   I +         +  
Sbjct: 63  YLDI-ENIIEIAKESGAD----AIHPGYGFLSENIEFARRCEQEGIIFVGPKSKHLDMFG 117

Query: 92  DKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK- 146
           DK+++K+      +PV P     +   +   +       P +IK   GG   G+ V++  
Sbjct: 118 DKIKAKEQALLADIPVIPGSNGPVAGIKEVEEFGEKNGYPLMIKASLGGGGRGMRVVESK 177

Query: 147 ---DQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSY 202
               +S      ++ +    D++ +E+ V +   +   ++GD   ++  +          
Sbjct: 178 EHVKESFDRASSEAKAAFGNDEVYVEKCVMNPKHIEVQILGDTHGNIVHLFERDCSIQRR 237

Query: 203 ELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
             K        V P   I  ++   +   A    + +        +FL        +++E
Sbjct: 238 HQK-----VVEVAPCNAITSELRNRICDAAVKLMKNVDYINAGTVEFLV--EGDDFYFIE 290

Query: 262 INV 264
           +N 
Sbjct: 291 VNP 293


>gi|255767255|ref|NP_389006.3| carbamoyl phosphate synthase large subunit [Bacillus subtilis
           subsp. subtilis str. 168]
 gi|254763438|sp|P18185|CARY_BACSU RecName: Full=Carbamoyl-phosphate synthase arginine-specific large
           chain; AltName: Full=Carbamoyl-phosphate synthetase
           ammonia chain
 gi|225184882|emb|CAB12965.3| arginine-specific carbamoyl-phosphate synthetase (large subunit)
           [Bacillus subtilis subsp. subtilis str. 168]
          Length = 1030

 Score = 65.5 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 43/229 (18%), Positives = 86/229 (37%), Gaps = 15/229 (6%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--QHLISPPYV 129
           LE   I    +      +  D+ +  Q++   G+      +       +     I  P +
Sbjct: 650 LEKAGITLLGTSFQTLDVLEDRDQFYQLLDELGLKHAKGEIAYTKEEAASKASEIGYPVL 709

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           I+P      +G+I++     +   L    S  +   +LI+QYV G E+   ++ D     
Sbjct: 710 IRPSYVIGGMGMIIVDSQAQLSQLLNDEDSMPY--PILIDQYVSGKEVEIDLISDGE--- 764

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
            E+ +P    +       S +S  +LP   I   + + ++  A    + +  +GI    F
Sbjct: 765 -EVFIPTYTEHIERAGVHSGDSFAILPGPSITSGLQQGMKDAAQKIARKLSFKGIMNIQF 823

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           + D  +  +  LE+N +   T     P ++   G     L   ++  AS
Sbjct: 824 VID--NGNILVLEVNPRASRT----VPVVSKVMGVPMIPLATRLLAGAS 866



 Score = 62.1 bits (150), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 46/286 (16%), Positives = 106/286 (37%), Gaps = 33/286 (11%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQID---------------------VDRSVGLV 45
           G ++E + S   G     AL++ G++V  ++                        S+  +
Sbjct: 21  GQAAEFDYS---GTQGCIALKEEGYRVILVNSNPATIMTDEAFADEIYFEPLTAESLTAI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   +PD     L G    +  V+     +L+   +    + +       D+ + + +++
Sbjct: 78  IKKERPDGLLANLGGQTALNLAVELEETGVLKEHGVKLLGTSVETIQKGEDREKFRSLMN 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
               PV  S +V+     +     I  P +I+P       G  +    ++    + Q+  
Sbjct: 138 ELKQPVPESEIVDNEADALHFAESIGFPVIIRPAYTLGGKGGGIAPDKEAFTAMIKQALL 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +  +Q L+E+ + G  E+   VM D++   T I V   +       ++  +        
Sbjct: 198 ASPINQCLVEKSIAGFKEIEYEVMRDSN--NTCITVCNMENIDPVGVHTGDSIVVAPSQT 255

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +  + Y+ ++  +     A+   G     F  DP S++ + +E+N 
Sbjct: 256 LTDEDYQMLRTASLTIISALDVVGGCNIQFALDPFSKQYYVIEVNP 301


>gi|317401778|gb|EFV82394.1| cyanphycin synthetase [Achromobacter xylosoxidans C54]
          Length = 856

 Score = 65.5 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 23/112 (20%), Positives = 50/112 (44%), Gaps = 5/112 (4%)

Query: 88  ALSMDKMRSKQVVSSCGVPVC--PSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIV-I 144
           +++ DK  +K ++ + GVPV    S+        +   +  P V+KP  G    G+ V I
Sbjct: 200 SIAQDKDLTKMLLDAAGVPVPLGRSVTTAEDAWAAAQELGGPVVVKPRDGSQGRGVAVNI 259

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK 196
           +  + +      +       ++++E+Y+ G +    V+G A +  +    P+
Sbjct: 260 ETRERVIQAFEVAE--EISSEVIVERYIPGHDFRLLVVGGALVAASRRDPPQ 309


>gi|169632633|ref|YP_001706369.1| carbamoyl-phosphate synthase, large subunit [Acinetobacter
           baumannii SDF]
 gi|169151425|emb|CAP00159.1| carbamoyl-phosphate synthase, large subunit [Acinetobacter
           baumannii]
          Length = 1076

 Score = 65.5 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 28/196 (14%), Positives = 72/196 (36%), Gaps = 8/196 (4%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYV 129
           LE    P   +   A   + D+ R +Q++    +    + +V            +  P V
Sbjct: 653 LEEAGTPIIGTSPDAIDRAEDRERFQQMIQRLQLRQPNNSIVKSAEEGISEAAKVGYPLV 712

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  +  +   L ++   ++   +L++ ++ D  E+    + D    
Sbjct: 713 VRPSYVLGGRAMEIVYNEDELKRYLREAVQASNEAPVLLDHFLDDATEVDVDCVSDGKDV 772

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           V    +   +       +S  ++  + P  +  +I  E++R      + +G  G+    F
Sbjct: 773 VIGGIMQHIEQAGI---HSGDSACSIPPYSLSKEIQNEMRRQTIAMAKELGVVGLMNVQF 829

Query: 249 LFDPLSRKVFWLEINV 264
                   ++ LE+N 
Sbjct: 830 AV--KGNDIYVLEVNP 843



 Score = 65.5 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 44/278 (15%), Positives = 95/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D              ++V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPSMADATYIEPITWQTVAQIIEKERPDAVLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      +LE   +    +   A   + D+    + +   G+    + +
Sbjct: 89  TMGGQTALNCALALDENGVLEKYGVELIGATKEAIEKAEDRKLFDEAMRKIGLECPKAAI 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  ++ Q     P +I+P       G  +    +       +    +   QLLI++
Sbjct: 149 AETMEEALEIQSRFGFPVIIRPSFTMGGSGGGIAYNREEFLEICERGFDLSPTHQLLIDE 208

Query: 171 YVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + + +   A+   D           +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCAIENFDPMGVHT----GDSITVAPAQTLTDKEYQLM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P   ++  +E+N 
Sbjct: 265 RNASVAVLREIGVETGGSNVQFGINPKDGRMVVIEMNP 302


>gi|15920370|ref|NP_376039.1| hypothetical protein ST0192 [Sulfolobus tokodaii str. 7]
 gi|41017394|sp|Q976J9|LYSX_SULTO RecName: Full=Alpha-aminoadipate--lysW ligase lysX; Short=AAA--lysW
           ligase lysX
 gi|15621152|dbj|BAB65148.1| 285aa long conserved hypothetical protein [Sulfolobus tokodaii str.
           7]
          Length = 285

 Score = 65.5 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 50/266 (18%), Positives = 88/266 (33%), Gaps = 41/266 (15%)

Query: 20  KACASALEDAGFKVSQIDVDR-------SVGLVLAHLKPDLAF--NVLHGNFGEDGLVQA 70
           K         G  V  I                L  L  D+    N  H        +  
Sbjct: 15  KNLIQEARKLGHTVIPIYTKDFYYFYNNDSNETLGDL--DVVIQRNTSHARAVITSTI-- 70

Query: 71  ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTMDSQHLISPPY 128
             E L    T +         +K+ +  ++S  G+ V  +I+       ++  + +S P 
Sbjct: 71  -FENLSYK-TINDSSTLIKCENKLYTLSLLSKHGIRVPKTIVAFSKEKALELANKLSYPV 128

Query: 129 VIKPLKGGSSLGIIVIKKDQS------IPLDLLQSSSWNHGDQLLIEQYVD--GIELTCG 180
           VIKP++G  S G +V +          +      +  + +    LI+++V     ++   
Sbjct: 129 VIKPVEG--SWGRMVARAIDEDTLRNFLEYQEYTTLQFRY--IYLIQEFVKKPDRDIRIF 184

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
            +GD +  V    V   ++     K ++       P KI  +    +Q LA      IG 
Sbjct: 185 TIGDEA-PVGIYRVNSRNW-----KTNTALGAKAEPLKIDEE----LQDLALKVKDIIGG 234

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQP 266
             +   D   DP  R     E+N  P
Sbjct: 235 FFLG-IDVFEDP-ERGYIINEVNGVP 258


>gi|85708555|ref|ZP_01039621.1| carbamoyl-phosphate synthase large subunit [Erythrobacter sp. NAP1]
 gi|85690089|gb|EAQ30092.1| carbamoyl-phosphate synthase large subunit [Erythrobacter sp. NAP1]
          Length = 1107

 Score = 65.5 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 40/215 (18%), Positives = 86/215 (40%), Gaps = 14/215 (6%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-SILVNRFTMDS-QHLISPPYV 129
           LE   +P   +   A   + D+ R  ++V+   +      I   R    +    I  P +
Sbjct: 690 LEDAGVPILGTSPDAIDHAEDRERFAKLVNKLKLKQPDNGIAYTRDEAAAVAARIGYPVL 749

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  +  +   +  + + +    +L++QY+ D IE     + D    
Sbjct: 750 LRPSFVLGGRAMEIVDSEAQLDDYINTAVTVSGESPVLVDQYLRDAIECDVDALCDGK-- 807

Query: 189 VTEIAVPKSDFYSYELK-YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
             E+ +     +  E   +S  ++  + P  +  DI +E++R A    +A+G RG+    
Sbjct: 808 --EVRIAGVMQHIEEAGVHSGDSACTLPPYSLSADIIEEMERQAEALARALGVRGLMNVQ 865

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAG 282
           F       +V+ +E+N +   T     P +A   G
Sbjct: 866 FAV--KDGEVYLIEVNPRASRT----VPFVAKAIG 894



 Score = 55.9 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 46/278 (16%), Positives = 98/278 (35%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVDRS------------VGLVLAHLKPDLAFN 56
           SG     AL++ G++V  +         D + +            V  ++A  KPD    
Sbjct: 29  SGTQAIKALKEEGYRVVLVNSNPATIMTDPEFADATYVEPITPEIVAKIIAKEKPDALLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  ++     +L    +    +   A   + ++ R ++ +   G+    S +
Sbjct: 89  TMGGQTALNCALKLDEMGVLAEHGVEMIGAKADAIDKAENRQRFREAMDKIGLESARSGV 148

Query: 113 VNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            N      D       P +I+P       G  +    +     + +    +   ++LIE+
Sbjct: 149 ANTVDEARDVLERTGLPAIIRPSFTLGGTGGGIAYNKEEFDRIVREGLDASPTTEVLIEE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPA-KIPLDIYKEV 227
            + G  E    V+ D + +   I   ++ D           +S  V PA  +    Y+ +
Sbjct: 209 SLLGWKEYEMEVVRDRADNAIIICSIENVDPMGVHT----GDSITVAPALTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P   ++  +E+N 
Sbjct: 265 RTASIEVLREIGVETGGSNVQFAVNPADGRLIVIEMNP 302


>gi|126172754|ref|YP_001048903.1| alpha-L-glutamate ligase [Shewanella baltica OS155]
 gi|153002325|ref|YP_001368006.1| alpha-L-glutamate ligase [Shewanella baltica OS185]
 gi|217974913|ref|YP_002359664.1| RimK family alpha-L-glutamate ligase [Shewanella baltica OS223]
 gi|304410862|ref|ZP_07392479.1| alpha-L-glutamate ligase, RimK family [Shewanella baltica OS183]
 gi|307304967|ref|ZP_07584717.1| alpha-L-glutamate ligase, RimK family [Shewanella baltica BA175]
 gi|190360194|sp|A6WT04|RIMK2_SHEB8 RecName: Full=Ribosomal protein S6 modification protein 2
 gi|190360201|sp|A3CZX1|RIMK1_SHEB5 RecName: Full=Ribosomal protein S6 modification protein 1
 gi|125995959|gb|ABN60034.1| alpha-L-glutamate ligases, RimK family [Shewanella baltica OS155]
 gi|151366943|gb|ABS09943.1| alpha-L-glutamate ligase, RimK family [Shewanella baltica OS185]
 gi|217500048|gb|ACK48241.1| alpha-L-glutamate ligase, RimK family [Shewanella baltica OS223]
 gi|304350759|gb|EFM15160.1| alpha-L-glutamate ligase, RimK family [Shewanella baltica OS183]
 gi|306912369|gb|EFN42793.1| alpha-L-glutamate ligase, RimK family [Shewanella baltica BA175]
          Length = 301

 Score = 65.5 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 58/303 (19%), Positives = 114/303 (37%), Gaps = 39/303 (12%)

Query: 16  LSSGKACASALEDAGFKVSQID----------VDRSVGLVLAHL-KPDLAFNVLHGNFGE 64
           L S +    A +  G +   I+          +  S+      L   D     +H +   
Sbjct: 12  LYSTQRLVEACQSRGHEAVVINTLNCYMNINSIKPSIHYEGTELVGFDAIIPRIHASVTF 71

Query: 65  DGL-VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV--PVCPSILVNRFTMDSQ 121
            G  V    E++ + Y  +  ++ A S DK+R+ Q++S  G+  PV           D  
Sbjct: 72  YGCAVVRQFEMMGV-YAANDSISIARSRDKLRALQLLSRKGIGMPVTGFANKPNDIPDLI 130

Query: 122 HLISP-PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD---GIEL 177
           +++   P VIK L+G   +G+++ +   +     +  +       +L+++Y+    G ++
Sbjct: 131 NMVGGAPLVIKLLEGTQGIGVVLAETKTAAES--VIEAFLGLKANILVQEYIKESNGSDI 188

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
            C V+GD  +   +   P+ DF S            +   +         +++A  A +A
Sbjct: 189 RCFVVGDKVIASMKRQGPEGDFRSNLHLGGCGEVVKITAVE---------RKMAIAAVKA 239

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           +G       D      +R    LE+N  PG+  +          G S  E ++  +E   
Sbjct: 240 MGLVVAG-VD--ILRSNRGPLILEVNSAPGIEGI------EQTTGISVTEPIVEYIEKMV 290

Query: 298 CLR 300
             R
Sbjct: 291 AAR 293


>gi|262275628|ref|ZP_06053437.1| phosphoribosylglycinamide formyltransferase 2 [Grimontia hollisae
           CIP 101886]
 gi|262219436|gb|EEY70752.1| phosphoribosylglycinamide formyltransferase 2 [Grimontia hollisae
           CIP 101886]
          Length = 391

 Score = 65.5 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 43/249 (17%), Positives = 89/249 (35%), Gaps = 27/249 (10%)

Query: 31  FKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
             V  +D D ++  ++A  +PD     +      D LV   LE   +        A+ L+
Sbjct: 55  HVVDMLDGD-ALANIIAQEQPDYVVPEIEAI-ATDRLV--ALEKTGVNVV-PTARATQLT 109

Query: 91  MDKM-RSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147
           M++    +      G+P  P    +       +   +  P V+KP+   S  G  V++  
Sbjct: 110 MNREGIRRLAAEELGLPTSPYAFADTQEDFERAIENVGFPCVVKPVMSSSGKGQSVVRSL 169

Query: 148 QSIPLD--LLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP---KSDFYSY 202
             I       Q        ++++E +VD  +    ++  +++D      P   + +   Y
Sbjct: 170 ADIQSAWEYAQEGGRAGRGKVIVEGFVD-FDYEITLLTVSAIDGIHFCAPIGHRQEDGDY 228

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
              +         P  +     K  + +A     A+G  G+   +        +V + E+
Sbjct: 229 RESW--------QPQAMSEKARKAAEDIARKVVTALGGYGLFGVELFV--KGDEVMFSEV 278

Query: 263 NVQP---GM 268
           + +P   GM
Sbjct: 279 SPRPHDTGM 287


>gi|219130749|ref|XP_002185520.1| CPS III, carbamoyl-phosphate synthase mitochindrial precursor
            [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217403051|gb|EEC43007.1| CPS III, carbamoyl-phosphate synthase mitochindrial precursor
            [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 1463

 Score = 65.5 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 51/304 (16%), Positives = 103/304 (33%), Gaps = 44/304 (14%)

Query: 19   GKACASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ 69
            G +C   L   G+K + I         D D    L    L  +   ++ H     DG++ 
Sbjct: 949  GVSCIRTLRHLGYKSTMINYNPETVSTDYDECDRLYFEELSKERVLDIYH-RDKSDGVIV 1007

Query: 70   AI-----------LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RF 116
            ++           L+   +    +       + D+ +   ++   GV       +   + 
Sbjct: 1008 SVGGQIPNGLAIPLDKAGVKILGTTAKMIDNAEDRNKFSDMIDEIGVQQPAWRELTTSQD 1067

Query: 117  TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-I 175
             +D    +  P +++P    S   + V   D  +   L ++++ +    ++I  +++G +
Sbjct: 1068 ALDFAAKVGYPVLVRPSYVLSGAAMNVAYNDDQLRACLEEAATVSKEHPVVISDFIEGAV 1127

Query: 176  ELTC-GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
            E+ C GV  D  L    I     +       +S   S  + P  +     + V+  A   
Sbjct: 1128 EIECDGVGKDGELIAAAI----HEHIENAGVHSGDASLVLPPHTLSAYTKERVREAARKI 1183

Query: 235  HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI-FPEMAAYAGYSFRELLLWMV 293
             + +   G     F        V  +E NV       S  FP ++   G  F       +
Sbjct: 1184 VKRLDITGPVNIQF--VAKGTDVMCIECNV-----RASRSFPFVSKTMGVDF-------I 1229

Query: 294  EDAS 297
            E A+
Sbjct: 1230 EAAT 1233



 Score = 50.1 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 46/295 (15%), Positives = 98/295 (33%), Gaps = 44/295 (14%)

Query: 6   GGIS----SEREVSLSSGKACASALEDAGFKVSQIDVD---------------------- 39
           GG S     E + S   G+A   AL++ G +V  ++ +                      
Sbjct: 383 GGTSIGQAGEFDYS--GGQAI-KALKEEGLEVVLMNPNIASVQTNTDDKSASKADHVFFL 439

Query: 40  ----RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSM 91
                 V  V+   KPD     + G    +  VQ       E   +    + I A   + 
Sbjct: 440 PVTPEFVEEVIKKEKPDGVIISMGGQTALNCAVQMHESGTFEKYGVKILGTQIPAVINTE 499

Query: 92  DKMRSKQVVSSCGVPVCPSILVNR--FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS 149
           D+      ++     +  S         ++    +  P +I+       LG  +   D+ 
Sbjct: 500 DRQLFSDRLNEINEKIAESYTAQTIPEAVEHAKKVGYPLMIRSAFALGGLGSGIC-VDED 558

Query: 150 IPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS 208
              D+ +  + +   Q+L+E+ + G  E+   V+ D   +   + V   + +     ++ 
Sbjct: 559 HLKDMAK-KALSVSPQILVEKSMKGWKEVEYEVVRDTHDN--CVTVCNMENFDPLGIHTG 615

Query: 209 LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            +        +  + Y  ++  A    + +G  G     +   P S +   +E+N
Sbjct: 616 DSIVMAPSQTLSNEEYHMLRETAIKVVRHLGIVGECNIQYALHPESLEYAIIEVN 670


>gi|189205579|ref|XP_001939124.1| pyruvate carboxylase [Pyrenophora tritici-repentis Pt-1C-BFP]
 gi|187975217|gb|EDU41843.1| pyruvate carboxylase [Pyrenophora tritici-repentis Pt-1C-BFP]
          Length = 1196

 Score = 65.5 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 40/229 (17%), Positives = 82/229 (35%), Gaps = 33/229 (14%)

Query: 56  NVLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
           N++H  +G   E+      +E   + +            DK+ ++++   C VPV P   
Sbjct: 123 NMIHPGYGFLSENAEFARNVEKAGLIFVGPSPDTIDALGDKVSARKLAVKCNVPVVPGTP 182

Query: 113 --VNRFTMDSQ--HLISPPYVIKPL-----------KGGSSLGIIVIKKDQSIPLDLLQS 157
             V +F            P +IK             +  SSL         S      ++
Sbjct: 183 GPVEKFEDVKAFTDEFGFPIIIKAAFGGGGRGMRVVREQSSLK-------DSFERATSEA 235

Query: 158 SSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216
            S      + +E+++D    +   ++GD   +V  +           ++        + P
Sbjct: 236 KSAFGNGTVFVERFLDKPKHIEVQLLGDNQGNVVHLYE-----RDCSVQRRHQKVVEIAP 290

Query: 217 A-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           A  +P++    +   A    Q++  R    ++FL D  +R  +++EIN 
Sbjct: 291 AKDLPVETRDAILADAVRLAQSVKYRNAGTAEFLVDQQNR-YYFIEINP 338


>gi|166030993|ref|ZP_02233822.1| hypothetical protein DORFOR_00674 [Dorea formicigenerans ATCC
           27755]
 gi|166029260|gb|EDR48017.1| hypothetical protein DORFOR_00674 [Dorea formicigenerans ATCC
           27755]
          Length = 1077

 Score = 65.5 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 33/225 (14%), Positives = 80/225 (35%), Gaps = 13/225 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTMDSQHLISPPYV 129
           L  + +P   +       + D+    +++  C +P      +          + +  P +
Sbjct: 656 LMKMGVPILGTKAEDVDAAEDRELFDEILEKCQIPRPTGGTVFTAEEAKTVANRLGYPVL 715

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           ++P       G+ +   D  I   +   +       +L+++Y+ G E+    + D     
Sbjct: 716 VRPSYVLGGQGMQIAINDNDIEEFIGIINQIAQDHPILVDKYLQGKEIEVDAVCDGE--- 772

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
            +I +P    +       S +S  V PAK I     + ++       +++   G+    F
Sbjct: 773 -DILIPGIMEHIERAGIHSGDSISVYPAKSISDKTKRTIEEYTRRLAKSLHVIGLINIQF 831

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +      +V+ +E+N +   T     P ++   G     L   ++
Sbjct: 832 IV--CGEEVYVIEVNPRSSRT----VPYISKVTGIPIVPLATKVI 870



 Score = 54.0 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 42/286 (14%), Positives = 97/286 (33%), Gaps = 33/286 (11%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQID-------VDRSVG--------------LV 45
           G ++E + +   G     +L++ G +V  ++        D+ +                +
Sbjct: 21  GQAAEFDYA---GTQACRSLKEEGLEVVLLNSNPATIMTDKDIADKVYIEPLTVEVVEQL 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   KPD     L G    +  +    +   +   +    +       + D++  K  + 
Sbjct: 78  IMKEKPDSVLPTLGGQAALNLAMELEERGFFKEHNVRLIGTTAQTIKKAEDRLEFKSTME 137

Query: 102 SCGVPVCPSILVNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G P   S++V      ++    I  P V++P       G  +    + +   L     
Sbjct: 138 KIGEPCAASLVVESVEDGIEFAEKIGYPVVLRPAYTLGGSGGGIAHDRRQLVEILENGLR 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   Q+L+E+ + G  E+   VM DA+ +   I V   +       ++  +        
Sbjct: 198 LSRVGQVLVERCIAGWKEIEYEVMRDAAGN--CITVCNMENIDPVGVHTGDSIVVAPSQT 255

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +    Y+ ++  A      +   G     +  +P S +   +E+N 
Sbjct: 256 LGDKEYQMLRTSALNIISELNITGGCNVQYALNPESFEYCVIEVNP 301


>gi|163841257|ref|YP_001625662.1| pyruvate carboxylase [Renibacterium salmoninarum ATCC 33209]
 gi|162954733|gb|ABY24248.1| pyruvate carboxylase [Renibacterium salmoninarum ATCC 33209]
          Length = 1134

 Score = 65.5 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 40/249 (16%), Positives = 86/249 (34%), Gaps = 18/249 (7%)

Query: 28  DAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87
           + G  V        +  V      D  +   +G   E+  +    +   I +        
Sbjct: 53  EEGHPVRAYLDVEEIIRVAKEAGADAIYPG-YGFLSENPDLARAAKDAGITFVGPPAEVL 111

Query: 88  ALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD---SQHLISPPYVIKPLKGGSSLGIIVI 144
            L+ +K+ + +     GVPV  S   ++   +   +   I  P   K + GG   G+  +
Sbjct: 112 ELAGNKVAALKAAKKAGVPVLKSSEPSQDVAELIAAADEIGFPIFAKAVAGGGGRGMRRV 171

Query: 145 KKDQSIPLDLLQS-----SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDF 199
           +  + +P  L  +     +++      L +  +    +   ++ DA  +V          
Sbjct: 172 ETREDLPEALKSAMREADAAFGDPTMFLEQAVLRPRHIEVQILADAQGNVM-----HLFE 226

Query: 200 YSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS---R 255
               L+        + PA ++   I + + R A    QA+G       +FL D +     
Sbjct: 227 RDCSLQRRHQKVIEIAPAPQLDDTIRQALYRDAVAFAQALGYVNAGTVEFLVDTVGERAG 286

Query: 256 KVFWLEINV 264
           +  ++E+N 
Sbjct: 287 QHVFIEMNP 295


>gi|148828150|ref|YP_001292903.1| acetyl-CoA carboxylase biotin carboxylase subunit [Haemophilus
           influenzae PittGG]
 gi|148719392|gb|ABR00520.1| acetyl-CoA carboxylase [Haemophilus influenzae PittGG]
          Length = 448

 Score = 65.5 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 40/225 (17%), Positives = 85/225 (37%), Gaps = 27/225 (12%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+      +E     +         L  DK+ + + +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAEQVERSGFTFIGPTADVIRLMGDKVSAIKAMKKAGVPCVPGSDG 136

Query: 111 -----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWN 161
                I  N+   +    I  P +IK   GG   G+ V++ + ++   +     ++ +  
Sbjct: 137 PVSNDIAKNK---EIAKRIGYPIIIKASGGGGGRGMRVVRSEDALEESIAMTKAEAKAAF 193

Query: 162 HGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-I 219
           + D + +E+Y++    +   V+ D   +   +A           K          PA  I
Sbjct: 194 NNDMVYMEKYLENPRHVEIQVLADTHGNAVYLAERDCSMQRRHQK-----VVEEAPAPGI 248

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             ++ +++      A   IG RG    +FL+   + + +++E+N 
Sbjct: 249 TEEVRRDIGSRCANACVEIGYRGAGTFEFLY--ENGEFYFIEMNT 291


>gi|118469108|ref|YP_886179.1| acetyl-/propionyl-coenzyme A carboxylase alpha chain [Mycobacterium
           smegmatis str. MC2 155]
 gi|118170395|gb|ABK71291.1| acetyl-/propionyl-coenzyme A carboxylase alpha chain [Mycobacterium
           smegmatis str. MC2 155]
          Length = 598

 Score = 65.5 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 38/223 (17%), Positives = 76/223 (34%), Gaps = 21/223 (9%)

Query: 56  NVLHGNFG---EDGLV-QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           N +H  +G   E+    QA+++   + +      +     DK+ ++ + +    P+ P  
Sbjct: 83  NAIHPGYGFLSENADFAQAVID-AGLIWIGPSPQSIRDLGDKVTARHIAARAKAPLVPGT 141

Query: 112 LVNRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL----DLLQSSSWNHG 163
                  D           P  IK   GG   G+ V +  + IP        ++ +    
Sbjct: 142 PDPVKDADEVVAFAKEHGVPVAIKAAFGGGGRGMKVARTLEEIPELFESATREAIAAFGR 201

Query: 164 DQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPL 221
            +  +E+Y+D    +   V+ D   +V       +      L+          PA  +  
Sbjct: 202 GECFVERYLDKPRHVEAQVIADQHGNVVV-----AGTRDCSLQRRFQKLVEEAPAPFLTD 256

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              KE+   A    +  G  G    ++L       + +LE+N 
Sbjct: 257 AQRKEIHESAKRICKEAGYYGAGTVEYLV-GQDGLISFLEVNT 298


>gi|206971080|ref|ZP_03232031.1| acetyl-CoA carboxylase, biotin carboxylase [Bacillus cereus AH1134]
 gi|218232413|ref|YP_002368987.1| acetyl-CoA carboxylase biotin carboxylase subunit [Bacillus cereus
           B4264]
 gi|218899348|ref|YP_002447759.1| acetyl-CoA carboxylase, biotin carboxylase [Bacillus cereus G9842]
 gi|228902702|ref|ZP_04066849.1| Biotin carboxylase [Bacillus thuringiensis IBL 4222]
 gi|228910020|ref|ZP_04073840.1| Biotin carboxylase [Bacillus thuringiensis IBL 200]
 gi|228922939|ref|ZP_04086233.1| Biotin carboxylase [Bacillus thuringiensis serovar huazhongensis
           BGSC 4BD1]
 gi|228941345|ref|ZP_04103897.1| Biotin carboxylase [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|228954470|ref|ZP_04116495.1| Biotin carboxylase [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
 gi|228967225|ref|ZP_04128261.1| Biotin carboxylase [Bacillus thuringiensis serovar sotto str.
           T04001]
 gi|228974277|ref|ZP_04134846.1| Biotin carboxylase [Bacillus thuringiensis serovar thuringiensis
           str. T01001]
 gi|228980870|ref|ZP_04141174.1| Biotin carboxylase [Bacillus thuringiensis Bt407]
 gi|229071691|ref|ZP_04204907.1| Biotin carboxylase [Bacillus cereus F65185]
 gi|229081443|ref|ZP_04213943.1| Biotin carboxylase [Bacillus cereus Rock4-2]
 gi|229129464|ref|ZP_04258435.1| Biotin carboxylase [Bacillus cereus BDRD-Cer4]
 gi|229152386|ref|ZP_04280578.1| Biotin carboxylase [Bacillus cereus m1550]
 gi|229192396|ref|ZP_04319359.1| Biotin carboxylase [Bacillus cereus ATCC 10876]
 gi|206733852|gb|EDZ51023.1| acetyl-CoA carboxylase, biotin carboxylase [Bacillus cereus AH1134]
 gi|218160370|gb|ACK60362.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Bacillus cereus
           B4264]
 gi|218545402|gb|ACK97796.1| acetyl-CoA carboxylase, biotin carboxylase [Bacillus cereus G9842]
 gi|228590973|gb|EEK48829.1| Biotin carboxylase [Bacillus cereus ATCC 10876]
 gi|228630994|gb|EEK87631.1| Biotin carboxylase [Bacillus cereus m1550]
 gi|228654069|gb|EEL09936.1| Biotin carboxylase [Bacillus cereus BDRD-Cer4]
 gi|228701858|gb|EEL54344.1| Biotin carboxylase [Bacillus cereus Rock4-2]
 gi|228711422|gb|EEL63381.1| Biotin carboxylase [Bacillus cereus F65185]
 gi|228778806|gb|EEM27069.1| Biotin carboxylase [Bacillus thuringiensis Bt407]
 gi|228785327|gb|EEM33337.1| Biotin carboxylase [Bacillus thuringiensis serovar thuringiensis
           str. T01001]
 gi|228792594|gb|EEM40160.1| Biotin carboxylase [Bacillus thuringiensis serovar sotto str.
           T04001]
 gi|228805127|gb|EEM51721.1| Biotin carboxylase [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
 gi|228818271|gb|EEM64344.1| Biotin carboxylase [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|228836710|gb|EEM82057.1| Biotin carboxylase [Bacillus thuringiensis serovar huazhongensis
           BGSC 4BD1]
 gi|228849537|gb|EEM94371.1| Biotin carboxylase [Bacillus thuringiensis IBL 200]
 gi|228856889|gb|EEN01402.1| Biotin carboxylase [Bacillus thuringiensis IBL 4222]
 gi|326941965|gb|AEA17861.1| acetyl-CoA carboxylase biotin carboxylase subunit [Bacillus
           thuringiensis serovar chinensis CT-43]
          Length = 450

 Score = 65.5 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 85/220 (38%), Gaps = 16/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     +     + +      A +    K  ++  +   GVP+ P    
Sbjct: 77  AIHPGYGFLAENADFAELCRECNLIFIGPSPEAISKMGTKDVARDTMKEAGVPIVPGSQG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
            I      ++  + I  P +IK   GG   GI V + ++ +   +     ++S+      
Sbjct: 137 IIKNTEEAIELANQIGYPVIIKATAGGGGKGIRVARHEEELIKGIQITQQEASTAFGNPG 196

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+YV+    +   +M D   +   +            K    + +   PA +  DI 
Sbjct: 197 VYLEKYVEDFRHVEIQIMADTHGNAIHLGERDCTIQRRLQKLLEESPS---PA-LDEDIR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K++   A  A  A+   G    +F+++  ++  +++E+N 
Sbjct: 253 KQMGEAAVKAAVAVDYTGAGTVEFIYEYKTKTFYFMEMNT 292


>gi|167854917|ref|ZP_02477693.1| DNA mismatch repair protein [Haemophilus parasuis 29755]
 gi|167853984|gb|EDS25222.1| DNA mismatch repair protein [Haemophilus parasuis 29755]
          Length = 392

 Score = 65.5 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 30/186 (16%), Positives = 69/186 (37%), Gaps = 20/186 (10%)

Query: 93  KMRSKQVVSSCGVPVCPSILV--NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150
           K + K+V    G+ V    +   +         +  P +IKP  G  +     IK    +
Sbjct: 117 KAQMKEVFRKAGLKVAKGRVFKDDEDARKLAKELKFPVIIKPNSGVGASDTYKIKSADEL 176

Query: 151 PLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLN 210
                  ++     + ++E++++G  +T   + D   ++   +  +      E      +
Sbjct: 177 EAFFGYKNAH---VEYIMEEFIEGDIVTFDGLTDKDGNIVFYSSLEYSEVVLETVEKDND 233

Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR-----SDFLFDPLSRKVFWLEINVQ 265
             + +P +I  D+ K + +    A +        R      ++     + ++  LEIN +
Sbjct: 234 MFYYIPREIKEDLVK-LGQKCVDAFKV-------RERFFHFEYFRVKKTGELMPLEINCR 285

Query: 266 P--GMT 269
           P  G+T
Sbjct: 286 PPGGLT 291


>gi|328543264|ref|YP_004303373.1| RimK-like ATP-grasp [polymorphum gilvum SL003B-26A1]
 gi|326413010|gb|ADZ70073.1| RimK-like ATP-grasp [Polymorphum gilvum SL003B-26A1]
          Length = 487

 Score = 65.5 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 30/187 (16%), Positives = 70/187 (37%), Gaps = 8/187 (4%)

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLG 140
             ++     +K+   +++ + GVP   +++++  +     +  +  P V+K   G  S G
Sbjct: 276 DPVSMIRCTNKVYLAELLEANGVPTPKTVILSSLKEAEGLEERLGSPVVLKIPDGSFSRG 335

Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDF 199
           +  +  D+ I   L     +   D +L ++Y     +   GV+    L   +  + K  +
Sbjct: 336 VFKVSGDEQIREKLKV--LFQDSDIILAQEYCPTEFDWRIGVLDGEPLFAVQYLMAKKHW 393

Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
              + +    +      +    +    V  +A  A + IG       D     +  +V  
Sbjct: 394 QIVKHEDGKNSQEGSFRSVSLSEAPPAVVEIAVRAARLIGNGLYG-VD--LKSVGDRVVV 450

Query: 260 LEINVQP 266
           +E+N  P
Sbjct: 451 IEVNDNP 457


>gi|282859560|ref|ZP_06268665.1| carbamoyl-phosphate synthase, large subunit [Prevotella bivia
           JCVIHMP010]
 gi|282587788|gb|EFB92988.1| carbamoyl-phosphate synthase, large subunit [Prevotella bivia
           JCVIHMP010]
          Length = 1074

 Score = 65.5 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 21/197 (10%), Positives = 71/197 (36%), Gaps = 10/197 (5%)

Query: 71  ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ--HLISPPY 128
            L+   +P   +       + D+ +   ++++ G+       +            +  P 
Sbjct: 654 YLDEENVPILGTSAHDIDNAEDRAKFSSMLTNNGINQPEWSALTSMDDIQSFVDRVGFPV 713

Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC--GVMGDAS 186
           +++P    S   + +    + +   L  +++ +    +++ ++++  +      V  D  
Sbjct: 714 LVRPSYVLSGAAMNICSNKEELVRFLQLAANVSEDHPVVVSKFIENAKEIEMDAVAKDGE 773

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRS 246
           +    I    S+   +   +S   +    P K+ ++  + ++R++    +A+   G    
Sbjct: 774 ILAYAI----SEHIEFAGVHSGDATIQFPPQKLYVETMRRIKRVSRQIAKALHINGPFNI 829

Query: 247 DFLFDPLSRKVFWLEIN 263
            F+       +  +E N
Sbjct: 830 QFM--ARDNDILVIECN 844



 Score = 49.3 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 47/275 (17%), Positives = 93/275 (33%), Gaps = 34/275 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL + G     I+ + +                     V  V+   KPD    
Sbjct: 28  SGSQALKALREEGISTVLINPNIATVQTSEGVADQIYYLPVQPYFVERVIEKEKPDGILL 87

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
              G    +  V+     IL+   +    + + A   + D+    + +    V    S  
Sbjct: 88  SFGGQTALNCGVKLEQSGILKKHNVRVLGTPVAAIMNTEDRELFVERLDEIEVKTIKSEA 147

Query: 113 VNRFTMD--SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                    +   +  P +++       LG      ++ +    L   ++    Q+L+E+
Sbjct: 148 CENIEQARIAAKDLGYPIIVRAAYALGGLGSGFADNEEELNK--LCEKAFAFSPQVLVEK 205

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQ 228
            + G  E+   V+ D   +   I V   + +   L   +  S  V P++ +    Y +++
Sbjct: 206 SLKGWKEIEYEVVRDRYDN--CITVCNMENFD-PLGIHTGESIVVAPSQTLTNTEYHKLR 262

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            L+    + IG  G     + FDP S     +E+N
Sbjct: 263 ALSIKIVRHIGIVGECNVQYAFDPESEDYRVIEVN 297


>gi|254457619|ref|ZP_05071047.1| phosphoribosylglycinamide formyltransferase 2 [Campylobacterales
           bacterium GD 1]
 gi|207086411|gb|EDZ63695.1| phosphoribosylglycinamide formyltransferase 2 [Campylobacterales
           bacterium GD 1]
          Length = 387

 Score = 65.5 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 88/278 (31%), Gaps = 41/278 (14%)

Query: 19  GKACASALEDAGFKVSQID--------------------VDRSVGLVLAHLKPDLAFNVL 58
           GK  A   +  G +V  +D                       ++  ++   KPD     +
Sbjct: 23  GKEVAIEAQRLGLEVVAVDRYQNAPAHHVAHRSYVVNMQDKDALLEIIYREKPDYILPEI 82

Query: 59  HGNFGEDGLVQAILELLEIPY--THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116
                E   + A+    +  Y    +    S     K          G+   P   V   
Sbjct: 83  -----EAISIDALFAAEDKGYNVIPNASAVSKTMNRKNIRTFAAEVLGLKTGPYEFVTTE 137

Query: 117 T--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS-SSWNHGDQLLIEQYVD 173
               ++   +  P VIKP+   S  G  V+K ++ +P     +  +     +L++E +VD
Sbjct: 138 DGLREASKRMGYPCVIKPVMSSSGHGQSVLKCEEDVPKSWEIAKEARGDASELIVEAFVD 197

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
                  +      +         +    +  +S        P ++     ++ Q +A  
Sbjct: 198 FDYEITMLTARNGKETVYCEPIGHEQRDGDYVFSW------QPMQMSEIAKQKSQEMAKT 251

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP---GM 268
               +G RG+   +         V++ E++ +P   GM
Sbjct: 252 ITDGLGGRGLFGVELFI--KGDDVYFSEVSPRPHDTGM 287


>gi|84029433|sp|Q8PHK1|RIMK_XANAC RecName: Full=Ribosomal protein S6 modification protein
          Length = 295

 Score = 65.5 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 54/272 (19%), Positives = 108/272 (39%), Gaps = 35/272 (12%)

Query: 16  LSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL-----------KPDLAFNVLHGNFGE 64
           L S +    A    G  V  +D  R    + A               D     +  +   
Sbjct: 12  LYSTRRLIEAGRKRGHTVRILDPLRCYMRIAADGFSLHYKGKPITGFDAVIPRIGASVTR 71

Query: 65  DGL-VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            G  V   LE +   YT +   A   S DK+R+ Q++++ G+ +  ++  +    D+Q L
Sbjct: 72  YGTAVLRQLEFMG-TYTPNPSDAILRSRDKLRAHQLLAAQGIDMPVTVFGDNPD-DTQDL 129

Query: 124 IS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV---DGIE 176
           +S    PP+V+K L  G+    +++ +  S    ++++    + +  ++++++   +G +
Sbjct: 130 LSMLGPPPHVVK-LNEGAQGAGVILTEKASASRGVVEALRGLYAN-FIVQEFIGEAEGAD 187

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           L C V+GD  +        + DF S         +  V  A       ++ Q +A  + +
Sbjct: 188 LRCFVVGDKVVAAMRRQAAEGDFRSNLH---LGGTAAVAEA------TEQEQEVAVRSAR 238

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268
           A+G       D +          LE+N  PG+
Sbjct: 239 ALGLAVAG-VDLIRSRRG--PLVLEVNSTPGL 267


>gi|89072560|ref|ZP_01159132.1| carbamoyl-phosphate synthase large subunit [Photobacterium sp.
           SKA34]
 gi|89051664|gb|EAR57117.1| carbamoyl-phosphate synthase large subunit [Photobacterium sp.
           SKA34]
          Length = 1072

 Score = 65.5 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 44/278 (15%), Positives = 99/278 (35%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D D              V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPDMADATYIEPIHWEVVRNIIAKERPDAVLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV--PVCPS 110
            + G    +  +      +LE   +    +   A   + ++ R  + + + G+  P   +
Sbjct: 89  TMGGQTALNCALDLEKYGVLEEFNVEMIGATADAIDKAENRSRFDKAMKAIGLECPRADT 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                       ++  P +I+P       G  +    +       +    +  ++LLI++
Sbjct: 149 ATTMEEAYKVLEMVGFPCIIRPSFTMGGTGGGIAYNKEEFEEICSRGIDLSPTNELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + + T +   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCTIVCAIEN----FDPMGIHTGDSITVAPAQTLTDKEYQLM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P   ++  +E+N 
Sbjct: 265 RNASLAVLREIGVETGGSNVQFGINPKDGRMVIIEMNP 302



 Score = 63.6 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 34/197 (17%), Positives = 79/197 (40%), Gaps = 10/197 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQHLISPPYV 129
           LE   +P   +   A   + D+ R +Q V   G+    +  V+     ++    I  P V
Sbjct: 653 LEAAGVPIIGTSPDAIDRAEDRERFQQAVDRLGLLQPENATVSTMEQAIEKSRDIGFPLV 712

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  +Q +     ++ S ++   +L+++++ D +E+    + D    
Sbjct: 713 VRPSYVLGGRAMEIVYDEQDLRRYFNEAVSVSNESPVLLDRFLDDAVEVDVDAICDGEQV 772

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           V    +   +    +    S +S   LPA  +  +I   ++         +G RG+  + 
Sbjct: 773 VIGGIMEHIE----QAGVHSGDSACSLPAYTLSQEIQDVMREQVKNLAFELGVRGLMNTQ 828

Query: 248 FLFDPLSRKVFWLEINV 264
           F       +V+ +E+N 
Sbjct: 829 FAV--KDGEVYLIEVNP 843


>gi|308446210|ref|XP_003087122.1| hypothetical protein CRE_06282 [Caenorhabditis remanei]
 gi|308261317|gb|EFP05270.1| hypothetical protein CRE_06282 [Caenorhabditis remanei]
          Length = 371

 Score = 65.5 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 31/196 (15%), Positives = 73/196 (37%), Gaps = 8/196 (4%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQHLISPPYV 129
           LE    P   +   A   + D+ R +Q++    +    + +V      M     +  P V
Sbjct: 148 LEEAGAPIIGTSPDAIDRAEDRERFQQMIQRLNLRQPSNSIVKSAEEGMAEASKVGYPLV 207

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++  D  +   L  +   ++   +L++ ++ D  E+    + D    
Sbjct: 208 VRPSYVLGGRAMEIVYNDDELKRYLRDAVQASNEAPVLLDHFLDDATEVDVDCVSDGKDV 267

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           V    +   +       +S  ++  + P  +  +I+ E++R      + +G  G+    F
Sbjct: 268 VIGGIMQHIEQAGI---HSGDSACSIPPYSLSTEIHDEMRRQTVAMAKELGVIGLMNVQF 324

Query: 249 LFDPLSRKVFWLEINV 264
                   V+ LE+N 
Sbjct: 325 AV--KGNDVYILEVNP 338


>gi|237839699|ref|XP_002369147.1| pyruvate carboxylase, putative [Toxoplasma gondii ME49]
 gi|211966811|gb|EEB02007.1| pyruvate carboxylase, putative [Toxoplasma gondii ME49]
 gi|221504725|gb|EEE30390.1| pyruvate carboxylase, putative [Toxoplasma gondii VEG]
          Length = 1253

 Score = 65.5 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 33/220 (15%), Positives = 77/220 (35%), Gaps = 20/220 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H  +G   E+    A +E   +           L  DK+ ++ +     V   P    
Sbjct: 148 AIHPGYGFLSENAEFAAAVENAGLMLVGPPPEVIRLMGDKVEARSIAERANVQAVPGTNE 207

Query: 112 LVNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
            V  F   +     I  P ++K   GG   G+  + +++ +         ++ +      
Sbjct: 208 PVTDFEEAAAFCRQIGFPVMLKAAYGGGGRGMRRVFREEELKEAFERATSEAQAAFGNGA 267

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
           + +E+ V +G+ +   +MGD   +V              ++        + PA  +   +
Sbjct: 268 MFVEKLVQNGVHIEVQIMGDHFGNVV-----HLHERDCTVQRRHQKVIEIAPAPFLSPAL 322

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            + +   A    + +  +     +FL      + F++E+N
Sbjct: 323 RERILSDAVRLARFVSYQNAGTVEFLV--EGDRHFFIEVN 360


>gi|254389572|ref|ZP_05004798.1| hypothetical protein SSCG_02125 [Streptomyces clavuligerus ATCC
           27064]
 gi|294816843|ref|ZP_06775485.1| putative ligase/carboxylase [Streptomyces clavuligerus ATCC 27064]
 gi|197703285|gb|EDY49097.1| hypothetical protein SSCG_02125 [Streptomyces clavuligerus ATCC
           27064]
 gi|294321658|gb|EFG03793.1| putative ligase/carboxylase [Streptomyces clavuligerus ATCC 27064]
          Length = 451

 Score = 65.5 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 46/246 (18%), Positives = 95/246 (38%), Gaps = 25/246 (10%)

Query: 32  KVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSM 91
           +V  ID   +    L    P+              L   + ELL +PY       + +  
Sbjct: 76  EVVVIDTVEATAERLRERSPEGIITYCEPLQ---RLTAHLAELLGLPY--HTRATAEVLT 130

Query: 92  DKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQS 149
           DK + +  + + GV    + LV+     +  +  +  P V+KP+ G +S    ++++ ++
Sbjct: 131 DKWQQRAALRAGGVDSVRTALVHSEADWAPAVAQVGLPAVLKPVHGVASGNTFLVEEAEA 190

Query: 150 IPLDLLQSSSWNHGDQL-----LIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYEL 204
               L +  + +    +     ++E+Y+ G    C   GD      EIAV + + Y   +
Sbjct: 191 GLAHLRELLALDQPGLVAGGGLVLEEYLQGRP--CAPYGDYV--SVEIAVYEGELYDLGV 246

Query: 205 KYS------SLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR-GISRSDFLFDPLSRKV 257
                       +    P+ +     +E+  LA  A +A+G R G++ ++          
Sbjct: 247 TGKLPLAPPFRETGRFWPSHLGDSADEELFALARSAVRALGVRYGLTHTEIKLTAQG--P 304

Query: 258 FWLEIN 263
             +E+N
Sbjct: 305 RLIEVN 310


>gi|145637276|ref|ZP_01792937.1| acetyl-CoA carboxylase [Haemophilus influenzae PittHH]
 gi|260581948|ref|ZP_05849744.1| acetyl-CoA carboxylase, biotin carboxylase [Haemophilus influenzae
           NT127]
 gi|319775093|ref|YP_004137581.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Haemophilus
           influenzae F3047]
 gi|319897515|ref|YP_004135712.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Haemophilus
           influenzae F3031]
 gi|329122994|ref|ZP_08251565.1| acetyl-CoA carboxylase, biotin carboxylase [Haemophilus aegyptius
           ATCC 11116]
 gi|145269528|gb|EDK09470.1| acetyl-CoA carboxylase [Haemophilus influenzae PittHH]
 gi|260095141|gb|EEW79033.1| acetyl-CoA carboxylase, biotin carboxylase [Haemophilus influenzae
           NT127]
 gi|317433021|emb|CBY81392.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Haemophilus
           influenzae F3031]
 gi|317449684|emb|CBY85891.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Haemophilus
           influenzae F3047]
 gi|327471925|gb|EGF17365.1| acetyl-CoA carboxylase, biotin carboxylase [Haemophilus aegyptius
           ATCC 11116]
          Length = 448

 Score = 65.5 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 40/225 (17%), Positives = 85/225 (37%), Gaps = 27/225 (12%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+      +E     +         L  DK+ + + +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAEQVERSGFTFIGPTADVIRLMGDKVSAIKAMKKAGVPCVPGSDG 136

Query: 111 -----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWN 161
                I  N+   +    I  P +IK   GG   G+ V++ + ++   +     ++ +  
Sbjct: 137 PVSNDIAKNK---EIAKRIGYPIIIKASGGGGGRGMRVVRSEDALEESIAMTKAEAKAAF 193

Query: 162 HGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-I 219
           + D + +E+Y++    +   V+ D   +   +A           K          PA  I
Sbjct: 194 NNDMVYMEKYLENPRHVEIQVLADTHGNAVYLAERDCSMQRRHQK-----VVEEAPAPGI 248

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             ++ +++      A   IG RG    +FL+   + + +++E+N 
Sbjct: 249 TEEVRRDIGSRCANACVEIGYRGAGTFEFLY--ENGEFYFIEMNT 291


>gi|16272909|ref|NP_439133.1| acetyl-CoA carboxylase biotin carboxylase subunit [Haemophilus
           influenzae Rd KW20]
 gi|145632358|ref|ZP_01788093.1| acetyl-CoA carboxylase [Haemophilus influenzae 3655]
 gi|229843967|ref|ZP_04464108.1| acetyl-CoA carboxylase biotin carboxylase subunit [Haemophilus
           influenzae 6P18H1]
 gi|260580062|ref|ZP_05847892.1| acetyl-CoA carboxylase, biotin carboxylase [Haemophilus influenzae
           RdAW]
 gi|1168279|sp|P43873|ACCC_HAEIN RecName: Full=Biotin carboxylase; AltName: Full=Acetyl-CoA
           carboxylase subunit A; Short=ACC
 gi|1573999|gb|AAC22632.1| acetyl-CoA carboxylase, biotin carboxylase (accC) [Haemophilus
           influenzae Rd KW20]
 gi|144987265|gb|EDJ93795.1| acetyl-CoA carboxylase [Haemophilus influenzae 3655]
 gi|229812961|gb|EEP48649.1| acetyl-CoA carboxylase biotin carboxylase subunit [Haemophilus
           influenzae 6P18H1]
 gi|260093346|gb|EEW77279.1| acetyl-CoA carboxylase, biotin carboxylase [Haemophilus influenzae
           RdAW]
          Length = 448

 Score = 65.5 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 40/225 (17%), Positives = 85/225 (37%), Gaps = 27/225 (12%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+      +E     +         L  DK+ + + +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAEQVERSGFTFIGPTADVIRLMGDKVSAIKAMKKAGVPCVPGSDG 136

Query: 111 -----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWN 161
                I  N+   +    I  P +IK   GG   G+ V++ + ++   +     ++ +  
Sbjct: 137 PVSNDIAKNK---EIAKRIGYPIIIKASGGGGGRGMRVVRSEDALEESIAMTKAEAKAAF 193

Query: 162 HGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-I 219
           + D + +E+Y++    +   V+ D   +   +A           K          PA  I
Sbjct: 194 NNDMVYMEKYLENPRHVEIQVLADTHGNAVYLAERDCSMQRRHQK-----VVEEAPAPGI 248

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             ++ +++      A   IG RG    +FL+   + + +++E+N 
Sbjct: 249 TEEVRRDIGSRCANACVEIGYRGAGTFEFLY--ENGEFYFIEMNT 291


>gi|329893939|ref|ZP_08269974.1| Carbamoyl-phosphate synthase large chain [gamma proteobacterium
           IMCC3088]
 gi|328923394|gb|EGG30711.1| Carbamoyl-phosphate synthase large chain [gamma proteobacterium
           IMCC3088]
          Length = 1073

 Score = 65.5 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 26/196 (13%), Positives = 76/196 (38%), Gaps = 8/196 (4%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           LE   +P   +   A   + D+ R + ++   G+    +  V      +++   I  P V
Sbjct: 653 LEAKGVPIIGTTPDAIDRAEDRERFQHMIQKLGLKQPANTTVRSVDEALEAAASIGYPLV 712

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLD 188
           ++P        + ++ +++ +   +  +   +    +L++ ++   IE+    + D    
Sbjct: 713 VRPSYVLGGRAMEIVFREEDLLRYMKNAVLVSDDSPVLLDSFLSAAIEVDIDAVSDGKTV 772

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           V    +   +       +S  ++  + P  +P+D+  E++         +G  G+   + 
Sbjct: 773 VIGAIMQHIEQAGV---HSGDSACALPPYNLPMDVQDEMREQVKQMALELGVCGL--MNV 827

Query: 249 LFDPLSRKVFWLEINV 264
                  +++ +E+N 
Sbjct: 828 QLAWQDNEIYVIEVNP 843



 Score = 61.3 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 40/278 (14%), Positives = 91/278 (32%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D               +V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPSMADATYIEPIEWETVSKIIEAERPDALLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      +L+   +    +   A   + D+      +   G+    +  
Sbjct: 89  TMGGQTALNCALDLDKHGVLKKFGVEMIGATKEAIDKAEDRQLFDDAMKRIGLETPRAAT 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                        I  P +I+P       G  +    +      ++    +   +LLI++
Sbjct: 149 ARSMEHAFAILEDIGLPCIIRPSFTMGGSGGGIAYNREEFEEICIRGFDLSPTHELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + +   +   ++    ++       +S  V PA+ +     + +
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIEN----FDAMGVHTGDSITVAPAQTLTDKEMQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  DP + +   +E+N 
Sbjct: 265 RDASLAVLREIGVETGGSNVQFGQDPKTGRFVIIEMNP 302


>gi|307257159|ref|ZP_07538931.1| Phosphoribosylglycinamide formyltransferase 2 [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|306864321|gb|EFM96232.1| Phosphoribosylglycinamide formyltransferase 2 [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
          Length = 378

 Score = 65.5 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 55/310 (17%), Positives = 102/310 (32%), Gaps = 58/310 (18%)

Query: 19  GKACASALEDAGFKVSQID--------------------VDRSVGLVLAHLKPDLAFNVL 58
           GK     L+  G +V  +D                       ++  ++   KPD     +
Sbjct: 9   GKEVVIELQRLGVEVIAVDRYENAPAQQVAHRAYTISMLDGAALRALVEKEKPDFIVPEV 68

Query: 59  HGNFGEDGLVQAILELLEIPY-THSGILASALSMDKM-RSKQVVSSCGVPVCPSILVNRF 116
                E      ++EL +  Y       A+ L+M++    +      G+   P   V+  
Sbjct: 69  -----EAIATATLVELEQEGYNVVPTAKATQLTMNREGIRRLAAEELGLKTSPYRFVDNL 123

Query: 117 TMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLD--LLQSSSWNHGDQLLIEQYV 172
               Q +  I  P V+KP+   S  G  VIK +  I       Q      G ++++E ++
Sbjct: 124 EDFKQAVAEIGIPCVVKPIMSSSGHGQSVIKSEDQIQQAWDYSQEGGRAGGGRVIVEGFI 183

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYEL----KYSSLNSTHVL-PAKIPLDIYKEV 227
                          ++T++ V   +  S+      +    +      P  +     K  
Sbjct: 184 K-----------FDYEITQLTVRHVNGTSFLAPIGHRQEDGDYRESWQPQAMSDLALKRA 232

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP---GMT-----PVSIFPEMAA 279
           Q  A     A+G RGI   +        ++ + E++ +P   GM       +S F   A 
Sbjct: 233 QETAERITTALGGRGIFGVELFV--CGDEIIFNEVSPRPHDTGMVTMASQELSQFALHAR 290

Query: 280 YA-GYSFREL 288
              G    E+
Sbjct: 291 AILGLPISEI 300


>gi|299821733|ref|ZP_07053621.1| carbamoyl-phosphate synthase, large subunit [Listeria grayi DSM
           20601]
 gi|299817398|gb|EFI84634.1| carbamoyl-phosphate synthase, large subunit [Listeria grayi DSM
           20601]
          Length = 1069

 Score = 65.5 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 48/304 (15%), Positives = 111/304 (36%), Gaps = 41/304 (13%)

Query: 20  KACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFNVL 58
           +AC S L++ G++V  ++ + +                     V  ++   +PD     L
Sbjct: 32  QACLS-LKEEGYRVVLVNSNPATIMTDTEMADKVYIEPITLDFVSRIIRKERPDAILPTL 90

Query: 59  HGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
            G  G +  ++     ILE   +    + + A   + D+   + +++  G PV  S +++
Sbjct: 91  GGQTGLNMAMELAEAGILEECGVEVLGTDLTAIKKAEDREAFRDLMNELGEPVPDSDIIH 150

Query: 115 RFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                 +    I  P +++P       G  +   D+ +   +      +   Q L+E+ +
Sbjct: 151 NLEEAKRFVERIGYPVIVRPAYTLGGSGGGICHDDKDLQEIVSSGLKLSPVTQCLLEKSI 210

Query: 173 DG---IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQ 228
            G   +E       + +  V            +     + +S  V P++ +    Y+ ++
Sbjct: 211 AGFKEVEYEVMRDANDNAMVVCNMENIDPVGIH-----TGDSIVVAPSQTLSDREYQLLR 265

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
            ++    +A+   G        DP S   + +E+N  P ++  S     +   GY   +L
Sbjct: 266 DVSLKIIRALEIEGGCNVQLALDPDSYNYYVIEVN--PRVSRSS--ALASKATGYPIAKL 321

Query: 289 LLWM 292
              +
Sbjct: 322 AAKI 325



 Score = 57.4 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 33/255 (12%), Positives = 89/255 (34%), Gaps = 32/255 (12%)

Query: 34  SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDK 93
             ID+++ +G+V+       A N+  G           L    +    + + A   + ++
Sbjct: 620 HVIDLEQPIGVVV-QFGGQTAINLAEG-----------LAAKGVKILGTSLEAIDRAENR 667

Query: 94  MRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
              ++ +    +P             +     I  P +++P        + +++ ++ + 
Sbjct: 668 DEFEKALEKLAIPQPEGKTATSVEEALTIARQIGYPVLVRPSYVLGGRAMEIVESEEGLK 727

Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS---LDVTEIAVPKSDFYSYELKYSS 208
             +  +   N    +L+++YV G E+    + D     +      + ++  +S       
Sbjct: 728 YYMNNAVKVNPKHPVLVDRYVQGQEVEVDAISDGENVLIPGIMEHIERAGVHS------- 780

Query: 209 LNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN---- 263
            +S  V PA +I   +   +          +   G+    ++      +VF +E+N    
Sbjct: 781 GDSIAVYPAQRISQKVKDTIVDYTTRLAIGLDIIGMLNIQYVI--AGEEVFVIEVNPRSS 838

Query: 264 -VQPGMTPVSIFPEM 277
              P ++ ++  P  
Sbjct: 839 RTAPFLSKITDIPMA 853


>gi|165976532|ref|YP_001652125.1| phosphoribosylglycinamide formyltransferase 2 [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
 gi|254788765|sp|B0BQ46|PURT_ACTPJ RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|165876633|gb|ABY69681.1| phosphoribosylglycinamide formyltransferase 2 [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
          Length = 393

 Score = 65.5 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 55/310 (17%), Positives = 101/310 (32%), Gaps = 58/310 (18%)

Query: 19  GKACASALEDAGFKVSQID--------------------VDRSVGLVLAHLKPDLAFNVL 58
           GK     L+  G +V  +D                       ++  +    KPD     +
Sbjct: 24  GKEVVIELQRLGVEVIAVDRYENAPAQQVAHRAYTISMLDGAALRALAEKEKPDFIVPEV 83

Query: 59  HGNFGEDGLVQAILELLEIPY-THSGILASALSMDKM-RSKQVVSSCGVPVCPSILVNRF 116
                E      ++EL +  Y       A+ L+M++    +      G+   P   V+  
Sbjct: 84  -----EAIATATLVELEQEGYNVVPTAKATQLTMNREGIRRLAAEELGLKTSPYRFVDNL 138

Query: 117 TMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLD--LLQSSSWNHGDQLLIEQYV 172
               Q +  I  P V+KP+   S  G  VIK +  I       Q      G ++++E ++
Sbjct: 139 EDFKQAVAEIGIPCVVKPIMSSSGHGQSVIKSEDQIQQAWDYSQEGGRAGGGRVIVEGFI 198

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYEL----KYSSLNSTHVL-PAKIPLDIYKEV 227
                          ++T++ V   +  S+      +    +      P  +     K  
Sbjct: 199 K-----------FDYEITQLTVRHVNGTSFLAPIGHRQEDGDYRESWQPQAMSDLALKRA 247

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP---GMT-----PVSIFPEMAA 279
           Q  A     A+G RGI   +        ++ + E++ +P   GM       +S F   A 
Sbjct: 248 QETAERITTALGGRGIFGVELFV--CGDEIIFNEVSPRPHDTGMVTMASQELSQFALHAR 305

Query: 280 YA-GYSFREL 288
              G    E+
Sbjct: 306 AILGLPISEI 315


>gi|145634149|ref|ZP_01789860.1| acetyl-CoA carboxylase [Haemophilus influenzae PittAA]
 gi|148826379|ref|YP_001291132.1| acetyl-CoA carboxylase biotin carboxylase subunit [Haemophilus
           influenzae PittEE]
 gi|229846031|ref|ZP_04466143.1| acetyl-CoA carboxylase biotin carboxylase subunit [Haemophilus
           influenzae 7P49H1]
 gi|145268593|gb|EDK08586.1| acetyl-CoA carboxylase [Haemophilus influenzae PittAA]
 gi|148716539|gb|ABQ98749.1| acetyl-CoA carboxylase biotin carboxylase subunit [Haemophilus
           influenzae PittEE]
 gi|229811035|gb|EEP46752.1| acetyl-CoA carboxylase biotin carboxylase subunit [Haemophilus
           influenzae 7P49H1]
          Length = 448

 Score = 65.5 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 40/225 (17%), Positives = 85/225 (37%), Gaps = 27/225 (12%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+      +E     +         L  DK+ + + +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAEQVERSGFTFIGPTADVIRLMGDKVSAIKAMKKAGVPCVPGSDG 136

Query: 111 -----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWN 161
                I  N+   +    I  P +IK   GG   G+ V++ + ++   +     ++ +  
Sbjct: 137 PVSNDIAKNK---EIAKRIGYPIIIKASGGGGGRGMRVVRSEDALEESIAMTKAEAKAAF 193

Query: 162 HGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-I 219
           + D + +E+Y++    +   V+ D   +   +A           K          PA  I
Sbjct: 194 NNDMVYMEKYLENPRHVEIQVLADTHGNAVYLAERDCSMQRRHQK-----VVEEAPAPGI 248

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             ++ +++      A   IG RG    +FL+   + + +++E+N 
Sbjct: 249 TEEVRRDIGSRCANACVEIGYRGAGTFEFLY--ENGEFYFIEMNT 291


>gi|78779359|ref|YP_397471.1| carbamoyl-phosphate synthase large subunit [Prochlorococcus marinus
           str. MIT 9312]
 gi|78712858|gb|ABB50035.1| carbamoyl-phosphate synthase large subunit [Prochlorococcus marinus
           str. MIT 9312]
          Length = 1098

 Score = 65.5 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 51/279 (18%), Positives = 102/279 (36%), Gaps = 36/279 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL  AG+++  I+ + +                     +  ++   KPD    
Sbjct: 29  SGTQACKALRKAGYEIILINSNPASIMTDPEVASKTYIEPLTPEIISQIILREKPDAILP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  V+      L+   +    + + A   + D+   K+ +    V VCPS +
Sbjct: 89  TMGGQTALNLAVKLSESDFLKKNNVELIGADLKAINKAEDRKLFKESMEKINVNVCPSGI 148

Query: 113 ---VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
              +       + + S P +I+P      +G  +    +            +  DQ+LIE
Sbjct: 149 ASNLAEAKEVQKKINSYPLIIRPAFTLGGVGGGIAFNLEEFIELCTTGLEESPRDQILIE 208

Query: 170 QYVDG-IELTCGVMGDASL-DVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKE 226
           + + G  E    VM D +   V   ++   D           +S  V PA+ +    Y+ 
Sbjct: 209 KSLIGWKEFELEVMRDTADNVVIVCSIENLDPMGVHT----GDSITVAPAQTLTDKEYQR 264

Query: 227 VQRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           ++ ++    + +G   G S   F  +P + +V  +E+N 
Sbjct: 265 LRDMSLKIIREVGVETGGSNIQFAINPSNGEVIVIEMNP 303



 Score = 42.8 bits (100), Expect = 0.065,   Method: Composition-based stats.
 Identities = 30/196 (15%), Positives = 68/196 (34%), Gaps = 10/196 (5%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVC-PSILVNRFTMDS-QHLISPPYVIKPL 133
                 +  ++  ++ D+     ++    +      I  N+         I  P V++P 
Sbjct: 677 GTKILGTSPISIDIAEDREEFTNILEELSIRQPLNGIARNQDEAQKVAKNIGFPLVVRPS 736

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEI 192
                  + ++K +  +   + ++   +    +L++QY+ + IE+    + D+   V   
Sbjct: 737 YVLGGRAMEIVKDENELSRYISEAVKVSPDHPILLDQYLNNAIEIDVDALCDSEGSVVIA 796

Query: 193 AVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
            + +           S +S   LP   +       V+    L  Q +   G+    F   
Sbjct: 797 GLMEHV---EPAGIHSGDSACCLPSISLSESTIDNVKTWTKLIAQKLNVVGLINLQFAVT 853

Query: 252 PLS---RKVFWLEINV 264
            L+    K+F LE N 
Sbjct: 854 NLNNKENKLFILEANP 869


>gi|332796788|ref|YP_004458288.1| carbamoyl-phosphate synthase, large subunit [Acidianus hospitalis
           W1]
 gi|332694523|gb|AEE93990.1| carbamoyl-phosphate synthase, large subunit [Acidianus hospitalis
           W1]
          Length = 1045

 Score = 65.5 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 58/299 (19%), Positives = 114/299 (38%), Gaps = 38/299 (12%)

Query: 18  SGKACASALEDAGFKVSQID------------VDR---------SVGLVLAHLKPDLAFN 56
           SG     AL++ G +   ++             D+         +V  V+   +PD    
Sbjct: 26  SGSQALKALKEEGIQTILVNSNVATVQTSYKMADKIYMLPVTWWAVEKVIEQERPDGIMI 85

Query: 57  VLHG----NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
              G    N G D   + IL+   +    + I     ++ + + ++ + +  +PV PS+ 
Sbjct: 86  GFGGQTALNVGVDLYKRGILQKYGVKVLGTPIEGIEKALSREKFRETMINVNLPVPPSLS 145

Query: 113 VNRFTMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                   Q    I  P +++        G  V   ++++  D+ ++ S ++  ++LIE+
Sbjct: 146 AKTEEEAIQKAREIGYPVMVRVSFNLGGRGSTVAWNEETLKRDIGRAFSQSYTHEVLIEK 205

Query: 171 YV-DGIELTCGVMGDASLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
           Y+    EL   VM D+  +   IA  ++ D            ST + P + +    Y+++
Sbjct: 206 YLYHWKELEYEVMRDSKGNSAVIACIENLDPMGVHT----GESTVIAPCQTLDNQEYQDM 261

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           +  A L  ++I   G     F  DP S   + +E    P M+  S     +   GY   
Sbjct: 262 RTKAELVAKSIDLVGECNVQFALDPNSYTHYIIE--TNPRMSRSS--ALASKATGYPLA 316



 Score = 56.3 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 45/314 (14%), Positives = 116/314 (36%), Gaps = 47/314 (14%)

Query: 7   GISSEREVSLSSG-KACASALED---AGFKVSQIDVDRSVGLVL--AHLKPDLAFNVLH- 59
           G+S E + S+ S   A     ++     +    +  D  V   L    L  +   ++++ 
Sbjct: 564 GVSVEFDWSVVSLLDAALKYFDEVAILNYNPETVSTDWDVAKKLYFDELTLERILDIVNK 623

Query: 60  -----------GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
                      G  G +  +  +LE   I    +   +  ++ D+ +  +++   G+   
Sbjct: 624 ENFRYVATFTGGQIGNN--LAKLLEDSGIRLLGTAGHSVDIAEDREKFSKLLDKLGIKQP 681

Query: 109 PSILVNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQL 166
           P I  +      +    +  P +I+P    S   + ++  +Q +  + + +   +    +
Sbjct: 682 PWISASSIEEVRKFVGEVGFPLLIRPSYVLSGSSMRIVYNEQEL-FNFINNLKISTKYPV 740

Query: 167 LIEQYVD---GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
           +I +Y+D     E+     G   + V    + ++  +S        ++T  +P + +   
Sbjct: 741 VISKYLDNAIEAEIDAASDGKGVIGVAIEHIEEAGVHS-------GDATMSIPTRKLGEG 793

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAG 282
           + K+++  A    + I  +G     F+        + +E+N++      S+ P  +   G
Sbjct: 794 LVKQMKEYALQIAREIEIKGPFNLQFVI--KDNTPYIIELNLR---ASRSM-PFSSKAKG 847

Query: 283 YSFRELLLWMVEDA 296
            +       ++E A
Sbjct: 848 VN-------IIEKA 854


>gi|297170411|gb|ADI21443.1| biotin carboxylase [uncultured gamma proteobacterium HF0070_10G19]
          Length = 454

 Score = 65.5 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 36/216 (16%), Positives = 73/216 (33%), Gaps = 18/216 (8%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI--LVNRF 116
           +G   E+       E     +            DK+ +K      G+P+ P     + + 
Sbjct: 82  YGFLAENFEFAEKCEASGFKFIGPSPDVIKKMGDKISAKNEAEKAGIPIVPGFKNKIPKD 141

Query: 117 T---MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQLLIE 169
                +  + I  P +IK   GG   G+ V++ +  +   L     ++ S    D + +E
Sbjct: 142 EKKLFNIANEIGYPIMIKASAGGGGRGMRVVRNENELIDGLAITMKEALSAFGSDVVYLE 201

Query: 170 QYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEV 227
           +Y++    +   V+GD   +   +            K          PA  +      +V
Sbjct: 202 KYIENPRHIEVQVVGDGKGNAIHLGTRDCSIQRRNQK-----IIEEAPATGLNEKELGQV 256

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
                   + +   G    +FL+     K F++E+N
Sbjct: 257 LSSCINLCEKLSYEGAGTIEFLY--KDGKFFFIEMN 290


>gi|262166392|ref|ZP_06034129.1| glutathione synthase/Ribosomal protein S6 modification enzyme
           (glutaminyl transferase) [Vibrio mimicus VM223]
 gi|262026108|gb|EEY44776.1| glutathione synthase/Ribosomal protein S6 modification enzyme
           (glutaminyl transferase) [Vibrio mimicus VM223]
          Length = 409

 Score = 65.5 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 29/189 (15%), Positives = 71/189 (37%), Gaps = 10/189 (5%)

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ----HLISPPYVIKPLKGGSS 138
              +     +K+   +++ +  VP   S+++  F  + +      +  P V+K   G  S
Sbjct: 194 DSESIMKCTNKVFLTELLETNKVPAPKSVIIRSFDPEWKMGLMEQLDFPMVLKIPDGAFS 253

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVMGDASLDVTEIAVPKS 197
            G++ ++ +Q +  +    + +     +L + +     +   GVM   ++   +  + + 
Sbjct: 254 RGVVKVRNEQELEKEA--GTLFEKSALILAQAFMPTDFDWRIGVMNRQAIFACKYMMSRG 311

Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
            +  Y+   S   +           + K V  +A  A   IG       D     +  +V
Sbjct: 312 HWQIYQHHNSGRVTAGGFETLDLKQVPKNVVDVAVKAANLIGGGLYG-VD--LKEIDGQV 368

Query: 258 FWLEINVQP 266
           + +E+N  P
Sbjct: 369 YVIEVNDNP 377


>gi|257467326|ref|ZP_05631637.1| carbamoyl phosphate synthase large subunit [Fusobacterium
           gonidiaformans ATCC 25563]
 gi|315918455|ref|ZP_07914695.1| carbamoyl-phosphate synthase subunit large [Fusobacterium
           gonidiaformans ATCC 25563]
 gi|313692330|gb|EFS29165.1| carbamoyl-phosphate synthase subunit large [Fusobacterium
           gonidiaformans ATCC 25563]
          Length = 1068

 Score = 65.5 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 31/216 (14%), Positives = 82/216 (37%), Gaps = 22/216 (10%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH------LIS 125
           LE  +I    +       + D+ + ++++    +         R + D +H       + 
Sbjct: 648 LEKRKIKILGTSAEKIDEAEDREKFEEMMEDLDIKRPRG----RASWDVEHGIAIANEVG 703

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            P +++P       G+ +   + ++   L  S S +    +LI++Y++GIEL    + D 
Sbjct: 704 YPVLVRPSYVLGGQGMEICHDEINLVKYLEASFSRDASSPVLIDKYLNGIELEVDAICDG 763

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGIS 244
              +    +   +           +S  + P   +     +++  +     +A+  +G+ 
Sbjct: 764 EDVLIPGVMEHLERAGVHS----GDSITIYPQQNLYAGTEEQILEITTKIARALKVKGMM 819

Query: 245 RSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFP 275
              F+      +++ +E+N       P ++ +S  P
Sbjct: 820 NIQFI--AYQNELYVIEVNPRSSRTVPYISKISGLP 853



 Score = 59.4 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 56/287 (19%), Positives = 108/287 (37%), Gaps = 35/287 (12%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQID-------VDRSVGL--------------V 45
           G ++E + S   G      L+  G +V  I+        D+++                V
Sbjct: 20  GQAAEFDYS---GTQACETLKKEGIEVVLINSNPATIMTDKAIADRIYIEPITFEFVVKV 76

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   +PD     + G    + +V+     ILE   I    + I +     D+   ++ + 
Sbjct: 77  IEKERPDSIIAGMGGQTALNMVVELFEKGILEKYGIKVIGTSIESIKRGEDRELFREAME 136

Query: 102 SCGVPVCPSILVNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G P+  S +V          + I  P V++P       G       Q +   LL+  S
Sbjct: 137 KIGEPILTSHVVESLEEGYKIANEIGYPVVVRPAYTLGGTGGGFAHNPQELEEILLKGLS 196

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   Q+LIE+ + G  E+   V+ DA+ +   +   ++      +   + +S  V P++
Sbjct: 197 LSRVGQVLIERSILGWKEIEYEVIRDANGNAITVCNMEN---IDPVGIHTGDSIVVAPSQ 253

Query: 219 -IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +    Y+ ++R +    + IG  G     F   P S +   +EIN 
Sbjct: 254 TLTDREYQMLRRASLKIVEEIGIIGGCNVQFALHPKSFEYAIIEINP 300


>gi|254281971|ref|ZP_04956939.1| carbamoyl-phosphate synthase, large subunit [gamma proteobacterium
           NOR51-B]
 gi|219678174|gb|EED34523.1| carbamoyl-phosphate synthase, large subunit [gamma proteobacterium
           NOR51-B]
          Length = 1073

 Score = 65.5 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 27/220 (12%), Positives = 84/220 (38%), Gaps = 12/220 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           LE   +P   +       + D+ R +Q+++  G+    +  V      +++   I  P V
Sbjct: 653 LEEAGVPIIGTTPDEIDRAEDRERFQQMINKLGLRQPANTTVRSVDEAIEAARNIGYPLV 712

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLD 188
           ++P        + ++ +++ +   +  +   +    +L++ ++   IE+    + D    
Sbjct: 713 VRPSYVLGGRAMEIVYREEDLLRYMRDAVRVSDDSPVLLDSFLSAAIEVDIDAVSDGKDV 772

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           V    +   +       +S  ++  + P  +  ++   ++ +       +G  G+   + 
Sbjct: 773 VIGAIMQHIEQAGV---HSGDSACSLPPYNLDAEVQNRMRDIVKQMGIELGVCGL--MNV 827

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
                  +++ +E+N +   T     P ++   G S  ++
Sbjct: 828 QLAYQDGEIYVIEVNPRASRT----VPFVSKAIGLSLAKV 863



 Score = 56.7 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 41/278 (14%), Positives = 96/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D              ++V  ++   KPD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPSMADATYIEPVEWQTVARIIEKEKPDAILP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +    + +L    +    +   A   + ++ +  + +   G+    + L
Sbjct: 89  TMGGQTALNCALKLAERGVLHEHGVEMIGATREAIDKAENREQFDRAMKRIGLETPRADL 148

Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +      +    I  P +I+P       G  +            +    +   +LLI++
Sbjct: 149 AHSMEEAFKVLDDIGFPCIIRPSFTMGGSGGGIAYNRDEFEQICTRGLELSPTSELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + +   +   ++    ++       +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEFEMEVVRDRNDNCIIVCAIEN----FDAMGVHTGDSITVAPAQTLTDKEYQIM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F   P + ++  +E+N 
Sbjct: 265 RNASLAVLREIGVETGGSNVQFGQCPDTGRLVVIEMNP 302


>gi|167569866|ref|ZP_02362740.1| argininosuccinate lyase [Burkholderia oklahomensis C6786]
          Length = 864

 Score = 65.5 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 47/237 (19%), Positives = 85/237 (35%), Gaps = 35/237 (14%)

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYVIKP 132
             +P   +   A     DK R  + +   GV    + +V+  T   D    ++ P V+KP
Sbjct: 117 FGLP--AADPDAIRTCRDKGRLHRCLRDAGVGAADTAIVSDRTQLRDLARSLTYPRVLKP 174

Query: 133 LKGGSSLGIIVIKKDQSIPL-------DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
             G  S+G+ +++ +  +                     QLL++ +V+G E +  V+G  
Sbjct: 175 AFGSGSVGVRLVQTEADMLAHGGRILDARSNERGIAVAPQLLVQSFVEGPEFSVEVVGLG 234

Query: 186 S------LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
           +      L VT   +    F+        +   H  PA I       +      A  A G
Sbjct: 235 AEHGYVVLGVTGKHLGPLPFF--------VERGHDFPAPISAAQRDAIVAETLRALDATG 286

Query: 240 CR-GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA-YAGYSFRELLLWMVE 294
            R G +  +        KV  +EIN +       + P+      G    ++L  M++
Sbjct: 287 HRFGPAHVECRV--SGGKVVVIEINPR---LAGGMIPQAVECATGV---DVLGAMID 335


>gi|115352409|ref|YP_774248.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia
           ambifaria AMMD]
 gi|170701600|ref|ZP_02892546.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia
           ambifaria IOP40-10]
 gi|122322587|sp|Q0BD59|PURT_BURCM RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|115282397|gb|ABI87914.1| formate-dependent phosphoribosylglycinamide formyltransferase
           [Burkholderia ambifaria AMMD]
 gi|170133483|gb|EDT01865.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia
           ambifaria IOP40-10]
          Length = 404

 Score = 65.5 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 46/277 (16%), Positives = 95/277 (34%), Gaps = 38/277 (13%)

Query: 19  GKACASALEDAGFKVSQID----------------VDRSVGLVL----AHLKPDLAFNVL 58
           GK    AL+  G +V  +D                +D +    L       +P L    +
Sbjct: 27  GKEVIIALQRLGVEVVAVDRYPDAPGHQVAHRAHVIDMTDAAALRAVVEAERPHLIVPEI 86

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKM-RSKQVVSSCGVPVCPSILVNRFT 117
                 D L  A +E   +        A+ L+M++    +      G+   P    + F 
Sbjct: 87  EAI-ATDAL--AAIEAAGLAEVIPTARATQLTMNREGIRRLAAEELGLATSPYAFADSFD 143

Query: 118 MDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH--GDQLLIEQYVD 173
             S  +  I  P V+KP+   S  G  V++ +  +      + +       ++++E ++D
Sbjct: 144 AFSAAVAKIGMPCVVKPVMSSSGKGQSVVRTEADVKPAWDYAMAGGRVNHGRVIVEGFID 203

Query: 174 ----GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
                 +LT   +  A+L+                 Y         P  +     ++ + 
Sbjct: 204 FEYEITQLTVRAIDPATLETRTYFCEPVGHVQVAGDY----VESWQPQPMSALALEKSRE 259

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
           +A    +A+G RG+   +         V++ E++ +P
Sbjct: 260 IAHKVTEALGGRGLFGVELFVR--GDDVWFSEVSPRP 294


>gi|125973466|ref|YP_001037376.1| carbamoyl phosphate synthase large subunit [Clostridium
           thermocellum ATCC 27405]
 gi|256005363|ref|ZP_05430328.1| carbamoyl-phosphate synthase, large subunit [Clostridium
           thermocellum DSM 2360]
 gi|125713691|gb|ABN52183.1| carbamoyl-phosphate synthase large subunit [Clostridium
           thermocellum ATCC 27405]
 gi|255990682|gb|EEU00799.1| carbamoyl-phosphate synthase, large subunit [Clostridium
           thermocellum DSM 2360]
 gi|316940297|gb|ADU74331.1| carbamoyl-phosphate synthase, large subunit [Clostridium
           thermocellum DSM 1313]
          Length = 1072

 Score = 65.5 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 51/286 (17%), Positives = 101/286 (35%), Gaps = 33/286 (11%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI---------DVD------------RSVGLV 45
           G ++E + +   G     AL++   +V  +         D +              V  +
Sbjct: 21  GQAAEFDYA---GTQACRALKEENIEVVLVNSNPATIMTDTNIADRVYIEPLTVEVVKKI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   KPD     L G  G +  ++      L+   +    +   A  ++ D+   K  + 
Sbjct: 78  IIKEKPDSILPTLGGQTGLNLAMELAESGFLKEHGVKLLGTATEAIKMAEDRQAFKDTME 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G P   S +VN     +D    I+ P V++P       G  +   ++ +         
Sbjct: 138 RIGEPCIASKVVNTVEDALDFAKEIAYPVVVRPAYTLGGTGGGIAYNEEELKEIASNGLR 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   Q+LIE+ + G  E+   VM D+  +V  I V   +       ++  +        
Sbjct: 198 LSRVHQVLIEKCIAGWKEIEYEVMRDSKGNV--ITVCNMENIDPVGVHTGDSIVVAPSQT 255

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +    Y+ ++  A     A+G  G     F  +P S +   +E+N 
Sbjct: 256 LTDREYQMLRSSALKIISALGIEGGCNVQFALNPNSFEYAVIEVNP 301



 Score = 64.4 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/221 (11%), Positives = 81/221 (36%), Gaps = 13/221 (5%)

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTMDSQHLISPPYVIKP 132
           + +    +       + D+ +  +++   G+P      I      +++ + +  P +++P
Sbjct: 652 MGVKVFGTEPKYIDAAEDREKFDRILEELGIPRPKGKTIFTLDEALEAANELGYPVLVRP 711

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192
                  G+ +   D+ I   +   +       +LI++Y+ G E+    + D    +   
Sbjct: 712 SYVLGGQGMEIAYNDKDIVEFMEIINRVKQEHPILIDKYMMGKEIEVDAISDGEDILIPG 771

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
            +   +           +S  V P + I   + +++        +A+   G+    +++ 
Sbjct: 772 IMEHLERAGVHS----GDSISVYPTQTIGEKLKEKIVDYTQKLAKALRVVGLINIQYVY- 826

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
             + +++ +E+N +   T     P ++   G     +   +
Sbjct: 827 -YNNELYVIEVNPRSSRT----VPYISKVTGIPMVNIATRI 862


>gi|327184044|gb|AEA32491.1| phosphoribosylaminoimidazole carboxylase ATPase subunit
           [Lactobacillus amylovorus GRL 1118]
          Length = 391

 Score = 65.5 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 42/208 (20%), Positives = 84/208 (40%), Gaps = 14/208 (6%)

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQ 121
           E+  +QA+ ++ +      G     ++  ++R K  + S      P + V       ++ 
Sbjct: 89  ENVDLQALKDVADKVKIPQGTNLLYITKHRLREKNFLRSASCMTAPYLPVKNMADLKEAI 148

Query: 122 HLISPPYVIKPLKGG-SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
             I    V+K  +GG    G  V+K D  +  +         GD +L       +E +  
Sbjct: 149 KKIGYNCVLKTCEGGYDGHGQEVLKSDADLKNNAHIKEILATGDCILEGWVPFKVEASVM 208

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHV--LPAKIPLDIYKEVQRLAFLAHQAI 238
           V  +A  +VT   V ++        Y++    H+  +PA++  +IY + Q +A    +AI
Sbjct: 209 VARNAKGEVTVFPVSEN--------YNADEILHISIVPARVSKEIYAKAQAIAKQIAEAI 260

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQP 266
             RGI   +      +  ++  E+  +P
Sbjct: 261 HLRGILGVELFIL-DNGDIYVNELAPRP 287


>gi|325469835|gb|ADZ16197.1| acetyl CoA-carboxylase [uncultured bacterium]
 gi|325469837|gb|ADZ16198.1| acetyl CoA-carboxylase [uncultured bacterium]
          Length = 155

 Score = 65.5 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 20/136 (14%), Positives = 48/136 (35%), Gaps = 8/136 (5%)

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS---ILVNRFTMDS 120
           E+     I+E     +         L  +K+ +   +   GVP  P     +     +  
Sbjct: 4   ENAEFAEIVENSGFIFIGPRPEHIRLMGNKVSAIIAMKKAGVPTVPGCDHAVTIHNALAE 63

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKD----QSIPLDLLQSSSWNHGDQLLIEQYV-DGI 175
              I  P ++K   GG   G+ ++++     +S+      +  W   D + +E+++    
Sbjct: 64  AKEIGFPLIVKAASGGGGRGMRIVERVDTLLESVQAAQRDAEMWFGDDTVYMERFLQKPR 123

Query: 176 ELTCGVMGDASLDVTE 191
            +   ++ D +     
Sbjct: 124 HVEVQILADGNGHAIH 139


>gi|325846204|ref|ZP_08169273.1| conserved domain protein [Anaerococcus hydrogenalis ACS-025-V-Sch4]
 gi|325481683|gb|EGC84719.1| conserved domain protein [Anaerococcus hydrogenalis ACS-025-V-Sch4]
          Length = 425

 Score = 65.5 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 33/195 (16%), Positives = 65/195 (33%), Gaps = 7/195 (3%)

Query: 71  ILELLEIP-YTHSGILASALSMDKMRSKQVVSSCGVPVCP-SILVNRFTMDSQHLISPPY 128
           + E   IP Y        A   +K   K V     +PV P   +      +    ++ P 
Sbjct: 90  LAEDTGIPKYCEENQWEMA--TNKAIFKDVCRKYDLPVSPVFDIAEPIDENQISKLTFPL 147

Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD 188
           V KP+    S GI + +K         ++ S +    +L+E+ ++              +
Sbjct: 148 VTKPVDNNGSTGITICEKPDDFINAYNKAKSASKTGNVLVEKKMNFEHSLIAHYTAQEGE 207

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR-GISRSD 247
           V    +   +        + + S   +P+K+  D    +        + IG + G    +
Sbjct: 208 VIFCGLTDKESKKINKDSAPVMSIQFMPSKLTEDFKANINDKIINMLEGIGIKYGPIWIE 267

Query: 248 FLFDPLSRKVFWLEI 262
             +D      +  EI
Sbjct: 268 VFYDE--NNFYLNEI 280


>gi|308177492|ref|YP_003916898.1| carbamoyl-phosphate synthase (glutamine-hydrolyzing) large subunit
           [Arthrobacter arilaitensis Re117]
 gi|307744955|emb|CBT75927.1| carbamoyl-phosphate synthase (glutamine-hydrolyzing) large subunit
           [Arthrobacter arilaitensis Re117]
          Length = 1092

 Score = 65.5 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 51/288 (17%), Positives = 109/288 (37%), Gaps = 36/288 (12%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI---------DVD------------RSVGLV 45
           G ++E + S   G      L++ G +V  +         D +              V  +
Sbjct: 21  GQAAEFDYS---GTQALRVLKEEGLRVILVNSNPATIMTDPEFADATYVEPITPEVVEKI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +A  +PD     L G    +  +       LE  ++    + I A  L  D+ + K VV 
Sbjct: 78  IAKERPDAILPTLGGQTALNTAIALDKSGALEKYDVELIGANIEAIELGEDREKFKGVVE 137

Query: 102 SCGVPVCPSILVNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
            CG     S++V+           ++ P V++P      LG  +    + +         
Sbjct: 138 RCGAESARSVIVHTLDEAFAAVEELNYPVVVRPSFTMGGLGSGMAYNPEDLRRIAGAGLQ 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
           ++   ++L+E+ + G  E    +M D + +V  +   ++      +   + +S  V PA 
Sbjct: 198 YSPTTEVLLEESILGWKEYELEMMRDKNDNVVVVCSIENFD---PVGVHTGDSITVAPAM 254

Query: 219 -IPLDIYKEVQRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
            +    Y++++ ++    + +G   G     F  +P + +V  +E+N 
Sbjct: 255 TLTDREYQKLRDISIAVIREVGVDTGGCNIQFAIEPDTGRVVVIEMNP 302



 Score = 59.4 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 47/281 (16%), Positives = 99/281 (35%), Gaps = 36/281 (12%)

Query: 11  EREVSLSSGKACASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH-- 59
           E + S     A   AL   G++   +         D D S  L    L  +    V+H  
Sbjct: 571 EFDYSCV--HAVM-ALRAEGYETVMVNCNPETVSTDYDISDRLYFEPLTLEDVLEVIHAE 627

Query: 60  -------GNFGEDG-----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV 107
                  G F + G      + A L+   +P   +   A  L+  +   +QV+ + G+  
Sbjct: 628 EKTGGVLGVFVQLGGQTPLKLAAELKAAGVPILGTSPEAIDLAEHRGAFQQVLDNAGLIA 687

Query: 108 CPSILVNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
             +     F         I  P +++P       G+ ++  + ++   +  ++       
Sbjct: 688 PKNGTAVSFADAKAIADSIGYPVLVRPSYVLGGRGMEIVYDEANLERYITNATEITVDHP 747

Query: 166 LLIEQYV-DGIELTC-GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           +L+++++ D IE+    +     L V  I     +   +    S  ++  + P  +  D+
Sbjct: 748 VLVDRFLEDAIEIDVDALFDGTDLYVGGIMEHIEEAGIH----SGDSACTLPPITLGADV 803

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              V+       + +G RG+    F     S  ++ +E N 
Sbjct: 804 RDRVKEATRAIAEGVGVRGLINIQFAL--ASDILYVIEANP 842


>gi|307822534|ref|ZP_07652765.1| protein of unknown function DUF201 [Methylobacter tundripaludum
           SV96]
 gi|307736138|gb|EFO06984.1| protein of unknown function DUF201 [Methylobacter tundripaludum
           SV96]
          Length = 493

 Score = 65.5 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 31/190 (16%), Positives = 69/190 (36%), Gaps = 13/190 (6%)

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD----SQHLISPPYVIKPLKGGSS 138
              +     +K+    +  +  VP   + L+++         +     P +IK   G  S
Sbjct: 274 DPTSMLRCTNKVYLADLFRTHKVPTPKTWLLHKGNATHLDRVEAEAGFPMIIKIPDGSFS 333

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKS 197
            GI+ +   + + L +     +     LL ++++    +   G+  + +L      + K+
Sbjct: 334 RGIVKVNDRKELELKV--EELFQKSALLLAQEFLYTDFDWRIGIFNNKALYACRYYMVKN 391

Query: 198 DFYSYELKYSSLNSTHVLPAKIPL-DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256
            +  Y    S  ++ +     +P  ++ K V  +A  A   IG       D        K
Sbjct: 392 HWQIYRHGSSRTDAGNFDT--LPTFEVPKAVLDVALKATLPIGNGLYG-VD--VKEKDGK 446

Query: 257 VFWLEINVQP 266
            + +E+N  P
Sbjct: 447 GYVIEVNDNP 456


>gi|229013071|ref|ZP_04170236.1| Carbamoyl-phosphate synthase large chain [Bacillus mycoides DSM
           2048]
 gi|228748325|gb|EEL98185.1| Carbamoyl-phosphate synthase large chain [Bacillus mycoides DSM
           2048]
          Length = 1018

 Score = 65.5 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 26/221 (11%), Positives = 80/221 (36%), Gaps = 20/221 (9%)

Query: 68  VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLIS 125
           + A LE   +    + +     + D+ + +  ++  G+P             +     I 
Sbjct: 588 LAAKLEAHGVKILGTSLEDLDRAEDRDKFEAALTKLGIPQPVGKTATTVEQAVAIADKIG 647

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            P +++P        + ++ + + +   +  +   +    +LI++Y+ G E+    + D 
Sbjct: 648 YPVLVRPSYVLGGRAMEIVYRQEELLHYMKNAVKVHADHPVLIDRYMVGKEIEVDAISDG 707

Query: 186 S---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCR 241
               +      + ++  +S        +S  V P + +   + +++        + +   
Sbjct: 708 ENVFIPGIMEHIERAGVHS-------GDSIGVYPPQSLSEKLKEQIIEHTIGLGKGLNIV 760

Query: 242 GISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277
           G+    F+      +V+ +E+N       P ++ ++  P  
Sbjct: 761 GLLNIQFVVFK--DEVYVIEVNPRASRTVPFLSKITGVPMA 799



 Score = 64.4 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 42/260 (16%), Positives = 96/260 (36%), Gaps = 13/260 (5%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMR 95
             V  ++   +PD     L G  G +  V+     ILE   +    + + A   + D+  
Sbjct: 18  EFVSRIIRKERPDALLPTLGGQTGLNMAVELAKSGILEECGVEILGTKLSAIEQAEDRDL 77

Query: 96  SKQVVSSCGVPVCPSILVNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153
            + ++     P+  S +++      +    I  P +++P       G  +   ++ +   
Sbjct: 78  FRTLMQELNEPIPSSTIIHTLEEAHEFVKEIGYPVIVRPAFTMGGTGGGICNNEEELIEI 137

Query: 154 LLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212
           +      +   Q L+E+ + G  E+   VM D++ +   I V   +       ++  +  
Sbjct: 138 VSGGLKHSPVTQCLLEKSIAGCKEIEYEVMRDSNDNA--IVVCNMENIDPVGVHTGDSIV 195

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
                 +    Y+ ++  +    +A+G  G        DP S + + +E+N  P ++  S
Sbjct: 196 VAPSQTLSDREYQMLRNTSLRIIRALGIEGGCNVQLALDPHSFQYYVIEVN--PRVSRSS 253

Query: 273 IFPEMAAYAGYSFRELLLWM 292
                +   GY   +L   +
Sbjct: 254 --ALASKATGYPIAKLAAKI 271


>gi|229075644|ref|ZP_04208626.1| Carbamoyl-phosphate synthase large chain [Bacillus cereus Rock4-18]
 gi|228707420|gb|EEL59611.1| Carbamoyl-phosphate synthase large chain [Bacillus cereus Rock4-18]
          Length = 1018

 Score = 65.5 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 42/260 (16%), Positives = 96/260 (36%), Gaps = 13/260 (5%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMR 95
             V  ++   +PD     L G  G +  V+     ILE   +    + + A   + D+  
Sbjct: 18  EFVSRIIRKERPDAILPTLGGQTGLNMAVELAKSGILEECGVEILGTKLSAIEQAEDRDL 77

Query: 96  SKQVVSSCGVPVCPSILVNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153
            + ++     P+  S +++      +    I  P +++P       G  +   ++ +   
Sbjct: 78  FRTLMQELNEPIPSSTIIHTLEEAHEFVKEIGYPVIVRPAFTMGGTGGGICSNEEELIEI 137

Query: 154 LLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212
           +      +   Q L+E+ + G  E+   VM D++ +   I V   +       ++  +  
Sbjct: 138 VSGGLKHSPVTQCLLEKSIAGCKEIEYEVMRDSNDNA--IVVCNMENIDPVGVHTGDSIV 195

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
                 +    Y+ ++  +    +A+G  G        DP S + + +E+N  P ++  S
Sbjct: 196 VAPSQTLSDREYQMLRNTSLRIIRALGIEGGCNVQLALDPHSFQYYVIEVN--PRVSRSS 253

Query: 273 IFPEMAAYAGYSFRELLLWM 292
                +   GY   +L   +
Sbjct: 254 --ALASKATGYPIAKLAAKI 271



 Score = 65.1 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 26/221 (11%), Positives = 81/221 (36%), Gaps = 20/221 (9%)

Query: 68  VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLIS 125
           + A LE   +    + +     + D+ + +  ++  G+P             +     I 
Sbjct: 588 LAAKLEEHGVKILGTSLEDLDRAEDRDKFEAALTKLGIPQPVGKTATTVEQAVAIAEEIG 647

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            P +++P        + ++ + + +   +  +   +    +LI++Y+ G E+    + D 
Sbjct: 648 YPVLVRPSYVLGGRAMEIVYRQEELLHYMKNAVKVHAEHPVLIDRYMVGKEIEVDAISDG 707

Query: 186 S---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCR 241
               +      + ++  +S        +S  V P + +  ++ +++        + +   
Sbjct: 708 ENVFIPGIMEHIERAGVHS-------GDSIGVYPPQSLSDELKEQIIEHTIALGKGLNIV 760

Query: 242 GISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277
           G+    F+      +V+ +E+N       P ++ ++  P  
Sbjct: 761 GLLNIQFVVFK--DQVYVIEVNPRASRTVPFLSKITGVPMA 799


>gi|229098357|ref|ZP_04229303.1| Carbamoyl-phosphate synthase large chain [Bacillus cereus Rock3-29]
 gi|229104449|ref|ZP_04235117.1| Carbamoyl-phosphate synthase large chain [Bacillus cereus Rock3-28]
 gi|229117382|ref|ZP_04246759.1| Carbamoyl-phosphate synthase large chain [Bacillus cereus Rock1-3]
 gi|228666082|gb|EEL21547.1| Carbamoyl-phosphate synthase large chain [Bacillus cereus Rock1-3]
 gi|228678971|gb|EEL33180.1| Carbamoyl-phosphate synthase large chain [Bacillus cereus Rock3-28]
 gi|228685062|gb|EEL38994.1| Carbamoyl-phosphate synthase large chain [Bacillus cereus Rock3-29]
          Length = 1018

 Score = 65.5 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 42/260 (16%), Positives = 96/260 (36%), Gaps = 13/260 (5%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMR 95
             V  ++   +PD     L G  G +  V+     ILE   +    + + A   + D+  
Sbjct: 18  EFVSRIIRKERPDAILPTLGGQTGLNMAVELAKSGILEECGVEILGTKLSAIEQAEDRDL 77

Query: 96  SKQVVSSCGVPVCPSILVNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153
            + ++     P+  S +++      +    I  P +++P       G  +   ++ +   
Sbjct: 78  FRTLMQELNEPIPSSTIIHTLEEAHEFVKEIGYPVIVRPAFTMGGTGGGICSNEEELIEI 137

Query: 154 LLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212
           +      +   Q L+E+ + G  E+   VM D++ +   I V   +       ++  +  
Sbjct: 138 VSGGLKHSPVTQCLLEKSIAGCKEIEYEVMRDSNDNA--IVVCNMENIDPVGVHTGDSIV 195

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
                 +    Y+ ++  +    +A+G  G        DP S + + +E+N  P ++  S
Sbjct: 196 VAPSQTLSDREYQMLRNTSLRIIRALGIEGGCNVQLALDPHSFQYYVIEVN--PRVSRSS 253

Query: 273 IFPEMAAYAGYSFRELLLWM 292
                +   GY   +L   +
Sbjct: 254 --ALASKATGYPIAKLAAKI 271



 Score = 65.1 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 26/221 (11%), Positives = 81/221 (36%), Gaps = 20/221 (9%)

Query: 68  VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLIS 125
           + A LE   +    + +     + D+ + +  ++  G+P             +     I 
Sbjct: 588 LAAKLEEHGVKILGTSLEDLDRAEDRDKFEAALTKLGIPQPVGKTATTVEQAVAIAEEIG 647

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            P +++P        + ++ + + +   +  +   +    +LI++Y+ G E+    + D 
Sbjct: 648 YPVLVRPSYVLGGRAMEIVYRQEELLHYMKNAVKVHAEHPVLIDRYMVGKEIEVDAISDG 707

Query: 186 S---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCR 241
               +      + ++  +S        +S  V P + +  ++ +++        + +   
Sbjct: 708 ENVFIPGIMEHIERAGVHS-------GDSIGVYPPQSLSDELKEQIIEHTIALGKGLNIV 760

Query: 242 GISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277
           G+    F+      +V+ +E+N       P ++ ++  P  
Sbjct: 761 GLLNIQFVVFK--DQVYVIEVNPRASRTVPFLSKITGVPMA 799


>gi|229168627|ref|ZP_04296349.1| Carbamoyl-phosphate synthase large chain [Bacillus cereus AH621]
 gi|228614783|gb|EEK71886.1| Carbamoyl-phosphate synthase large chain [Bacillus cereus AH621]
          Length = 1018

 Score = 65.5 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 26/221 (11%), Positives = 80/221 (36%), Gaps = 20/221 (9%)

Query: 68  VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLIS 125
           + A LE   +    + +     + D+ + +  ++  G+P             +     I 
Sbjct: 588 LAAKLEAHGVKILGTSLEDLDRAEDRDKFEAALTKLGIPQPVGKTATTVEQAVAIADKIG 647

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            P +++P        + ++ + + +   +  +   +    +LI++Y+ G E+    + D 
Sbjct: 648 YPVLVRPSYVLGGRAMEIVYRQEELLHYMKNAVKVHADHPVLIDRYMVGKEIEVDAISDG 707

Query: 186 S---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCR 241
               +      + ++  +S        +S  V P + +   + +++        + +   
Sbjct: 708 ENVFIPGIMEHIERAGVHS-------GDSIGVYPPQSLSEKLKEQIIEHTIGLGKGLNIV 760

Query: 242 GISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277
           G+    F+      +V+ +E+N       P ++ ++  P  
Sbjct: 761 GLLNIQFVVFK--DEVYVIEVNPRASRTVPFLSKITGVPMA 799



 Score = 64.4 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 42/260 (16%), Positives = 96/260 (36%), Gaps = 13/260 (5%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMR 95
             V  ++   +PD     L G  G +  V+     ILE   +    + + A   + D+  
Sbjct: 18  EFVSRIIRKERPDALLPTLGGQTGLNMAVELAKSGILEECGVEILGTKLSAIEQAEDRDL 77

Query: 96  SKQVVSSCGVPVCPSILVNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153
            + ++     P+  S +++      +    I  P +++P       G  +   ++ +   
Sbjct: 78  FRTLMQELNEPIPSSTIIHTLEEAHEFVKEIGYPVIVRPAFTMGGTGGGICNNEEELIEI 137

Query: 154 LLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212
           +      +   Q L+E+ + G  E+   VM D++ +   I V   +       ++  +  
Sbjct: 138 VSGGLKHSPVTQCLLEKSIAGCKEIEYEVMRDSNDNA--IVVCNMENIDPVGVHTGDSIV 195

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
                 +    Y+ ++  +    +A+G  G        DP S + + +E+N  P ++  S
Sbjct: 196 VAPSQTLSDREYQMLRNTSLRIIRALGIEGGCNVQLALDPHSFQYYVIEVN--PRVSRSS 253

Query: 273 IFPEMAAYAGYSFRELLLWM 292
                +   GY   +L   +
Sbjct: 254 --ALASKATGYPIAKLAAKI 271


>gi|281417667|ref|ZP_06248687.1| carbamoyl-phosphate synthase, large subunit [Clostridium
           thermocellum JW20]
 gi|281409069|gb|EFB39327.1| carbamoyl-phosphate synthase, large subunit [Clostridium
           thermocellum JW20]
          Length = 1072

 Score = 65.5 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 51/286 (17%), Positives = 101/286 (35%), Gaps = 33/286 (11%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI---------DVD------------RSVGLV 45
           G ++E + +   G     AL++   +V  +         D +              V  +
Sbjct: 21  GQAAEFDYA---GTQACRALKEENIEVVLVNSNPATIMTDTNIADRVYIEPLTVEVVKKI 77

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   KPD     L G  G +  ++      L+   +    +   A  ++ D+   K  + 
Sbjct: 78  IIKEKPDSILPTLGGQTGLNLAMELAESGFLKEHGVKLLGTATEAIKMAEDRQAFKDTME 137

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             G P   S +VN     +D    I+ P V++P       G  +   ++ +         
Sbjct: 138 RIGEPCIASKVVNTVEDALDFAKEIAYPVVVRPAYTLGGTGGGIAYNEEELKEIASNGLR 197

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +   Q+LIE+ + G  E+   VM D+  +V  I V   +       ++  +        
Sbjct: 198 LSRVHQVLIEKCIAGWKEIEYEVMRDSKGNV--ITVCNMENIDPVGVHTGDSIVVAPSQT 255

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +    Y+ ++  A     A+G  G     F  +P S +   +E+N 
Sbjct: 256 LTDREYQMLRSSALKIISALGIEGGCNVQFALNPNSFEYAVIEVNP 301



 Score = 64.8 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/221 (11%), Positives = 80/221 (36%), Gaps = 13/221 (5%)

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTMDSQHLISPPYVIKP 132
           + +    +       + D+ +  +++   G+P      I      +++ + +  P +++P
Sbjct: 652 MGVKVFGTEPKYIDAAEDREKFDRILEELGIPRPKGKTIFTLDEALEAANELGYPVLVRP 711

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192
                  G+ +   D+ I   +   +       +LI++Y+ G E+    + D    +   
Sbjct: 712 SYVLGGQGMEIAYNDKDIVEFMEIINRVKQEHPILIDKYMMGKEIEVDAISDGEDILIPG 771

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
            +   +           +S  V P + I   + +++        +A+   G+    +++ 
Sbjct: 772 IMEHLERAGVHS----GDSISVYPTQTIGEKLKEKIVDYTQKLAKALRVVGLINIQYVY- 826

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
             + + + +E+N +   T     P ++   G     +   +
Sbjct: 827 -YNNEFYVIEVNPRSSRT----VPYISKVTGIPMVNIATRI 862


>gi|309973527|gb|ADO96728.1| Acetyl-CoA carboxylase, biotin carboxylase subunit [Haemophilus
           influenzae R2846]
          Length = 448

 Score = 65.5 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 40/225 (17%), Positives = 85/225 (37%), Gaps = 27/225 (12%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+      +E     +         L  DK+ + + +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAEQVERSGFTFIGPTADVIRLMGDKVSAIKAMKKAGVPCVPGSDG 136

Query: 111 -----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWN 161
                I  N+   +    I  P +IK   GG   G+ V++ + ++   +     ++ +  
Sbjct: 137 PVGNDIAKNK---EIAKRIGYPIIIKASGGGGGRGMRVVRSEDALEESIAMTKAEAKAAF 193

Query: 162 HGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-I 219
           + D + +E+Y++    +   V+ D   +   +A           K          PA  I
Sbjct: 194 NNDMVYMEKYLENPRHVEIQVLADTHGNAVYLAERDCSMQRRHQK-----VVEEAPAPGI 248

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             ++ +++      A   IG RG    +FL+   + + +++E+N 
Sbjct: 249 TEEVRRDIGSRCANACVEIGYRGAGTFEFLY--ENGEFYFIEMNT 291


>gi|222082052|ref|YP_002541417.1| acetyl-CoA carboxylase [Agrobacterium radiobacter K84]
 gi|221726731|gb|ACM29820.1| acetyl-CoA carboxylase [Agrobacterium radiobacter K84]
          Length = 583

 Score = 65.5 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 31/240 (12%), Positives = 77/240 (32%), Gaps = 16/240 (6%)

Query: 34  SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDK 93
           + +D+++ +  +      D      +G   E       ++   + +            DK
Sbjct: 58  TYLDIEK-LIAIAKRSGADAVHPG-YGFLSERAEFARTVQEAGLIWIGPDPHVIEALGDK 115

Query: 94  MRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS 149
           + ++++ +S G P+       +      +        P  IK   GG   G+ V  K + 
Sbjct: 116 VEARRIAASVGAPLVAGSDGPVETAAEVIAFAEQHGLPVAIKAAHGGGGRGLKVAWKMEE 175

Query: 150 ----IPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYEL 204
                   + ++ +     +  +E+++D    +   ++ D   +V  +            
Sbjct: 176 VAELYESAVREAKAAFGRGECFLERFLDRPRHIEAQILADKHGNVLVLGTRDCSLQRRNQ 235

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K             +     +++   A     A G  G    +FL   +   + +LE+N 
Sbjct: 236 K----LVEEAPAPFLSDAQRQQIHDAAKRICAAAGYSGAGTVEFLL-GVDGTISFLEVNT 290


>gi|153003567|ref|YP_001377892.1| acetyl-CoA carboxylase, biotin carboxylase [Anaeromyxobacter sp.
           Fw109-5]
 gi|152027140|gb|ABS24908.1| acetyl-CoA carboxylase, biotin carboxylase [Anaeromyxobacter sp.
           Fw109-5]
          Length = 459

 Score = 65.5 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 82/220 (37%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     ++  + + +         L  +K+ +++     G+P+ P    
Sbjct: 77  AIHPGYGFLSENAEFAEMVTTMNLKFIGPRPEMIRLMGNKVAAREAAEKAGLPLLPGARG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK----DQSIPLDLLQSSSWNHGDQ 165
            +            +  P ++K   GG   G+ + ++     Q       ++ S      
Sbjct: 137 KLRDAEEAERIAEEVGYPVILKAAAGGGGRGMKICRERGQIRQLFETASNEALSAFGDGS 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+YV+    +   ++ D    V  +   +        K    +     PA +  ++ 
Sbjct: 197 MYLERYVEMPRHIELQIVADEHGRVIHLGERECSVQRRHQKLIEESP---SPA-VTPELR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +E+  +A  A + IG   +   +FL D   R  +++E+N 
Sbjct: 253 REMGEVALSAMRNIGYNNVGTIEFLMDEKGR-YYFMEMNT 291


>gi|108763738|ref|YP_631585.1| carbamoyl phosphate synthase large subunit [Myxococcus xanthus DK
           1622]
 gi|122981062|sp|Q1D6Y8|CARB_MYXXD RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|108467618|gb|ABF92803.1| carbamoyl-phosphate synthase, large subunit [Myxococcus xanthus DK
           1622]
          Length = 1083

 Score = 65.5 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 51/278 (18%), Positives = 93/278 (33%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL D G +V  +         D +             +   +LA  +PD    
Sbjct: 29  SGTQAIKALRDEGVEVVLLNSNPATVMTDPEFAHRTYIEPITVEAAERILASERPDSLLP 88

Query: 57  VLHGNFGED----GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +       Q ILE   +    + + A   + D+   K  +   GV +  S  
Sbjct: 89  TMGGQTALNLAKALAEQGILEKYGVRLIGASLDAINKAEDRQLFKAAMQKIGVALPKSGY 148

Query: 113 VNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  M     I  P +I+P       G  +    +            +    +L+E+
Sbjct: 149 ATTLDQAMSLVEDIGFPAIIRPSFTLGGTGGGIAYNREEFETICRSGLKASPTTTILVEE 208

Query: 171 YVDG-IELTCGVMGDASLDV-TEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            V G  E    V+ D + +V    ++   D           +S  V PA+ +    Y+ +
Sbjct: 209 SVLGWKEYELEVVRDTADNVIIVCSIENLDPMGVHT----GDSITVAPAQTLTDREYQRM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           ++ +    + IG   G S   F  +P   ++  +E+N 
Sbjct: 265 RQASLAIIREIGVETGGSNIQFGINPKDGRMVVIEMNP 302



 Score = 64.8 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/204 (14%), Positives = 70/204 (34%), Gaps = 23/204 (11%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--QHLISPPYV 129
           LE   +P   +   A   + D+ R   ++   G+    + +             I  P +
Sbjct: 654 LEKAGLPILGTSPDAIDRAEDRERFAALIEKLGLKQPENGVARSHAEAFKVAERIGYPVM 713

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG---------IELTCG 180
           ++P        +  +    S+   + ++ S +    +LI++++            + T  
Sbjct: 714 VRPSYVLGGRAMETVYDVASLERYMREAVSASPEHPVLIDRFLKEAIEVDLDLVADRTGA 773

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           VM    L+  + A   S             +  + P  +  D+ + ++  A    + +G 
Sbjct: 774 VMIGGVLEHIQEAGVHSG----------DAAATLPPHSLSPDLVERMKDQAIALARELGV 823

Query: 241 RGISRSDFLFDPLSRKVFWLEINV 264
            G+    F      + ++ LE+N 
Sbjct: 824 VGLMNVQFAI--QGKTIYILEVNP 845


>gi|94272416|ref|ZP_01292118.1| Carbamoyl-phosphate synthase L chain,
           ATP-binding:Carbamoyl-phosphate synthetase large
           chain-like:Biotin carboxylase-like [delta
           proteobacterium MLMS-1]
 gi|93450138|gb|EAT01468.1| Carbamoyl-phosphate synthase L chain,
           ATP-binding:Carbamoyl-phosphate synthetase large
           chain-like:Biotin carboxylase-like [delta
           proteobacterium MLMS-1]
          Length = 480

 Score = 65.5 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 38/292 (13%), Positives = 86/292 (29%), Gaps = 50/292 (17%)

Query: 13  EVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFN---------------- 56
           E++L        A+++ G     +        +      +  +                 
Sbjct: 12  EIALR----VIRAIQELGHSAVAVYETPDNEALHIRAADEAVWLGDGPRSDYLDIDKVIA 67

Query: 57  --------VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV 105
                    +H  +G   E+       E   I +        A   DK+ ++++++  GV
Sbjct: 68  AAKKTGACAIHPGYGFLAENPDFAKACEDNGIIFIGPSSQVIANLGDKVTARRIMAEAGV 127

Query: 106 PVCPSIL-VNRFTMDSQHLI------SPPYVIKPLKGGSSLGIIVIKKDQSIPLDL---- 154
           P+ P    +          +        P ++K   GG   GI  I  ++ +  ++    
Sbjct: 128 PLVPGTASLAPGEAGVAEAVEFCQTHGYPVMLKATAGGGGRGIRRIDDEKQLKAEIPAAR 187

Query: 155 -LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTH 213
               +++ +    L    +    +   V+ D       +            K        
Sbjct: 188 AEAQAAFGNDAVFLERLVITPKHIEVQVIADKEGTTVHLGSRDCSIQRRNQKL-----IE 242

Query: 214 VLPAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + P+ I    +  ++   A  A +A         +FL D      +++EIN 
Sbjct: 243 IAPSLIADQQLVDKICDTAVKAARAANYFNAGTVEFLVDK-DYNFYFMEINT 293


>gi|88857698|ref|ZP_01132341.1| hypothetical protein PTD2_04021 [Pseudoalteromonas tunicata D2]
 gi|88820895|gb|EAR30707.1| hypothetical protein PTD2_04021 [Pseudoalteromonas tunicata D2]
          Length = 307

 Score = 65.5 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 43/227 (18%), Positives = 80/227 (35%), Gaps = 32/227 (14%)

Query: 88  ALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD----SQHLISPPYVIKPLKGGSSLGIIV 143
           ALS DK ++  ++++ G+      L ++  M+    +        + KP  G    G  +
Sbjct: 96  ALSEDKFKTSYLLNNHGIATADYRLCHKNDMEGLKLAMREWGGRVIYKPTDGWG--GAGI 153

Query: 144 IKKDQSIPLDLLQSSSWNHGDQL-LIEQYVD--GIELTCGVMGDASLDVTEIAVPKSDFY 200
           +K +    LD+L         +   +E+++D    +    ++    +       PK    
Sbjct: 154 VKIEGEHALDMLVPFLSRTDLRYFYLERFIDYDNTDYRVDIVDGQYIGCYGRKAPKD--- 210

Query: 201 SYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260
            ++   +S  S  +           EV +LA  A    G   I+  D ++D    +   L
Sbjct: 211 DWKTNITSGGSVFLREPC------DEVVQLAIKAAAVSGLE-IAGVDIIYDREKEQFVVL 263

Query: 261 EINVQPGMTPVSIFPEMAAYAGYSFRE--------LLLWMVEDASCL 299
           EIN  P        PE     G +F +        L+   V  A   
Sbjct: 264 EINGIPAFAT----PEQ-EQMGLNFNQKKIDAIVNLIDRTVHLAHAK 305


>gi|312886632|ref|ZP_07746239.1| 5-(carboxyamino)imidazole ribonucleotide synthase [Mucilaginibacter
           paludis DSM 18603]
 gi|311300734|gb|EFQ77796.1| 5-(carboxyamino)imidazole ribonucleotide synthase [Mucilaginibacter
           paludis DSM 18603]
          Length = 379

 Score = 65.5 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 31/187 (16%), Positives = 68/187 (36%), Gaps = 15/187 (8%)

Query: 82  SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGG-SSLG 140
                  L  DK   KQ      +P  P ++++      Q     PY+ K  + G    G
Sbjct: 96  PQPRIIRLIQDKGLQKQFFKENDIPTAPFMVISSADQLKQSPFPYPYIQKLRRDGYDGKG 155

Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDF 199
           +  +  +  +     + S        +IE+ VD   E+   V  +   +V    V + +F
Sbjct: 156 VYRVTDETYLHKAFTEPS--------IIEELVDFEKEIAVIVARNEKGEVNTFPVVEMEF 207

Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
                  ++L    + P+ +P +I ++   +A    +++   G+   +        ++  
Sbjct: 208 ----NPQANLVEFLISPSTLPFEIQQKADLIARKIAESLKIVGLLAVELFLT-RDGEILV 262

Query: 260 LEINVQP 266
            E+  +P
Sbjct: 263 NEVAPRP 269


>gi|299138478|ref|ZP_07031657.1| carbamoyl-phosphate synthase, large subunit [Acidobacterium sp.
           MP5ACTX8]
 gi|298599724|gb|EFI55883.1| carbamoyl-phosphate synthase, large subunit [Acidobacterium sp.
           MP5ACTX8]
          Length = 1094

 Score = 65.5 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 57/297 (19%), Positives = 114/297 (38%), Gaps = 46/297 (15%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQID------------VDRSVGLVL------AH 48
           G S+E + S   G     AL+  G++V  ++             DR+    L        
Sbjct: 21  GQSAEFDYS---GTQACKALKAEGYEVVLVNSNPASIMTDPELADRTYIEPLTLKYVEEI 77

Query: 49  LKPDL--------AFNVLHGNFGE-------DGLVQAILELLEIPYTHSGILASALSMDK 93
           L+ ++         F VL    G+       D     +LE   +    + + A   + D+
Sbjct: 78  LRVEVEMMAGKEGVFAVLPTVGGQTALNLAVDLADAGVLEKYGVELIGAKLEAIKKAEDR 137

Query: 94  MRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
           +  K  ++  G+ +  S+L+N  R  ++    +  P VI+P       G  +    + + 
Sbjct: 138 LLFKDAMNKIGLDMPKSMLINNLRDGIEFAAKLGFPVVIRPSFTLGGSGGGIAYNREELM 197

Query: 152 LDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-L 209
             L +    +   + L+E+ V G  E    V+ D + +V  I   ++    ++       
Sbjct: 198 EILSRGLDLSPVHECLLEESVLGWKEYELEVVRDLNDNVIIICSIEN----FDPMGVHTG 253

Query: 210 NSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +S  V PA+ +    Y+ ++  A    + IG   G S   F  +P + ++  +E+N 
Sbjct: 254 DSITVAPAQTLTDREYQVMRDAAIAVIREIGVETGGSNVQFAVNPQNGRMTVIEMNP 310



 Score = 62.8 bits (152), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 34/225 (15%), Positives = 88/225 (39%), Gaps = 14/225 (6%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           L+   +P   +   +  L+ D+ R  ++++  G+P     +       +     +  P +
Sbjct: 661 LKAAGVPIIGTSPESIDLAEDRKRFGKLITELGIPQPEGAMATSVEEALAGARRVEYPVL 720

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        +++   D+++   +  +  ++    +LI+ ++ D  E+    + D    
Sbjct: 721 VRPSYVLGGRAMVIAYDDEAVVRYMSTAIEYSQERPVLIDHFLEDAQEVDVDALCDGKDV 780

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           V    +   +    E    S +S+ VLPA  +  ++ + ++        A+   G+   +
Sbjct: 781 VIAGIMQHIE----EAGVHSGDSSCVLPAVDLSAEVLETIRSYTRQLALALNVIGL--VN 834

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
             F     KVF +E+N +   T     P ++   G    ++   +
Sbjct: 835 LQFAIQRGKVFVIEVNPRASRT----VPYVSKATGIQLAKVASRL 875


>gi|260773484|ref|ZP_05882400.1| carbamoyl-phosphate synthase large chain [Vibrio metschnikovii CIP
           69.14]
 gi|260612623|gb|EEX37826.1| carbamoyl-phosphate synthase large chain [Vibrio metschnikovii CIP
           69.14]
          Length = 1076

 Score = 65.5 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 46/278 (16%), Positives = 96/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D D              V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPDMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV--PVCPS 110
            + G    +  +      +L    +    +   A   + D+ R  + + S G+  P   +
Sbjct: 89  TMGGQTALNCALELEKHGVLAEFGVEMIGATADAIDKAEDRSRFDKAMKSIGLACPRADT 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                     Q ++  P +I+P       G  +    +       +    +  ++LLI++
Sbjct: 149 AKTMEEAYRVQEMVGFPCIIRPSFTMGGTGGGIAYNKEEFEEICRRGLDLSPTNELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D + + +   A+   D           +S  V PA+ +    Y+ +
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCAIENFDPMGIHT----GDSITVAPAQTLTDKEYQLM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  +    + IG   G S   F  +P   ++  +E+N 
Sbjct: 265 RNASLAVLREIGVETGGSNVQFGINPKDGRMVIIEMNP 302



 Score = 64.8 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 35/196 (17%), Positives = 77/196 (39%), Gaps = 8/196 (4%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQHLISPPYV 129
           LE   +P   +   A   + D+ R +Q V   G+    +  V      ++    I  P V
Sbjct: 653 LEAAGVPIIGTSPDAIDRAEDRERFQQAVERLGLLQPENATVTTMEQAIEKSREIGFPLV 712

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           ++P        + ++  +Q +     ++ S ++   +L+++++D       V  DA  D 
Sbjct: 713 VRPSYVLGGRAMEIVYDEQDLRRYFNEAVSVSNESPVLLDRFLD---DAVEVDIDAICDG 769

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
             + +     +  +    S +S   LPA  +  +I   ++         +G RG+  + F
Sbjct: 770 ERVVIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMREQVEKLAFELGVRGLMNTQF 829

Query: 249 LFDPLSRKVFWLEINV 264
                  +V+ +E+N 
Sbjct: 830 AV--KDNQVYLIEVNP 843


>gi|170691825|ref|ZP_02882989.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia
           graminis C4D1M]
 gi|170143109|gb|EDT11273.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia
           graminis C4D1M]
          Length = 407

 Score = 65.5 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 45/274 (16%), Positives = 92/274 (33%), Gaps = 32/274 (11%)

Query: 19  GKACASALEDAGFKVSQID----------------VDRSVGLVLAHL----KPDLAFNVL 58
           GK    AL+  G +V  +D                +D +    L  L    +P L    +
Sbjct: 27  GKEVIIALQRLGVEVIAVDRYPNAPGHQVAHRSHVIDMTDRAALRALVEQERPHLIVPEI 86

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKM-RSKQVVSSCGVPVCPSILVNRFT 117
                 D L  A +E   I        A+ L+M++    +      G+P  P    +   
Sbjct: 87  EAI-ATDAL--AAVESDGIAEVIPTARATQLTMNREGIRRLAAEELGLPTSPYAFADSLD 143

Query: 118 MDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH--GDQLLIEQYVD 173
                   +  P V+KP+   S  G  V++ D  +      + +       ++++E ++D
Sbjct: 144 ELRAGIAKVGYPCVVKPVMSSSGKGQSVLRSDADVEPAWQYAMAGGRVNHGRVIVEGFID 203

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAF 232
             E     +   ++D +   V             + +      P  +     +  + +A 
Sbjct: 204 -FEYEITQLTVRAVDPSNGEVATYFCDPIGHVQVAGDYVESWQPQPMSPLALERSREVAH 262

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
               A+G RG+   +         V++ E++ +P
Sbjct: 263 KVTAALGGRGLFGVELFVR--GDDVWFSEVSPRP 294


>gi|326514592|dbj|BAJ96283.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 1135

 Score = 65.5 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 87/221 (39%), Gaps = 20/221 (9%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
           ++H  +G   E+    A +E   I +            DK++++++  S  VPV P    
Sbjct: 59  MIHPGYGFLSENAEFAAKVEAAGIIFIGPQPKVIDGLGDKIKARKLAMSINVPVVPGTPG 118

Query: 114 NRFTMDSQHLI----SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
              + +           P +IK   GG   G+ V++ ++S       + S          
Sbjct: 119 AIESYEEGAAFVKEHGFPIIIKAAAGGGGRGMRVVRDEESFEAAFKNAVSEAKTAFGNGT 178

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDI 223
           + +E+++D    +   ++GD++ +V              ++          PA  +  ++
Sbjct: 179 VFVERFLDKPKHIEAQLLGDSAGNVV-----HLFERDCSVQRRHQKVVEQGPATTLTDEM 233

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +++   A    +++G R     +FL D  SR  +++EIN 
Sbjct: 234 REQLLADAVKIAKSVGYRNAGTCEFLVD--SRGYYFIEINP 272


>gi|288818136|ref|YP_003432484.1| carbamoyl-phosphate synthase large subunit [Hydrogenobacter
           thermophilus TK-6]
 gi|288787536|dbj|BAI69283.1| carbamoyl-phosphate synthase large subunit [Hydrogenobacter
           thermophilus TK-6]
 gi|308751737|gb|ADO45220.1| MGS domain protein [Hydrogenobacter thermophilus TK-6]
          Length = 532

 Score = 65.5 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 38/241 (15%), Positives = 94/241 (39%), Gaps = 13/241 (5%)

Query: 27  EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           +   F+   ++   +V  V+   KPD  F    G       +   L+   +    +   +
Sbjct: 56  DKLYFEPIVLE---NVLEVIRKEKPDGVFLQFGGQTPLKLSLH--LKKAGVKILGTEPES 110

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
             ++ D+   + +++  G+   PS  V      +     I  P +++P        + +I
Sbjct: 111 IDMAEDRELFRDLINKLGIRQPPSGTVRSKEEAIKIAEGIGYPVLVRPSYVLGGRAMRII 170

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYE 203
             ++ +   L ++ S ++   +LI++Y+ D +E+    +GD    +    +   +     
Sbjct: 171 YDEEELLSYLEEAVSVSYERPILIDKYLSDSVEVDVDAIGDGEDYLIGAVMEHIEEAGV- 229

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
             +S  ++  + P  +   + K ++  +    +A+  RG+    F        V+ LE+N
Sbjct: 230 --HSGDSAACIPPYTLGEQVVKTIKEQSKKIAKALNVRGLINLQFAI--KGEDVYVLEVN 285

Query: 264 V 264
            
Sbjct: 286 P 286


>gi|229134696|ref|ZP_04263505.1| Carbamoyl-phosphate synthase large chain [Bacillus cereus
           BDRD-ST196]
 gi|228648742|gb|EEL04768.1| Carbamoyl-phosphate synthase large chain [Bacillus cereus
           BDRD-ST196]
          Length = 1018

 Score = 65.5 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 26/221 (11%), Positives = 80/221 (36%), Gaps = 20/221 (9%)

Query: 68  VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLIS 125
           + A LE   +    + +     + D+ + +  ++  G+P             +     I 
Sbjct: 588 LAAKLEAHGVKILGTSLEDLDRAEDRDKFEAALTKLGIPQPVGKTATTVEQAVAIADKIG 647

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            P +++P        + ++ + + +   +  +   +    +LI++Y+ G E+    + D 
Sbjct: 648 YPVLVRPSYVLGGRAMEIVYRQEELLHYMKNAVKVHADHPVLIDRYMVGKEIEVDAISDG 707

Query: 186 S---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCR 241
               +      + ++  +S        +S  V P + +   + +++        + +   
Sbjct: 708 ENVFIPGIMEHIERAGVHS-------GDSIGVYPPQSLSEKLKEQIIEHTIGLGKGLNIV 760

Query: 242 GISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277
           G+    F+      +V+ +E+N       P ++ ++  P  
Sbjct: 761 GLLNIQFVVFK--DEVYVIEVNPRASRTVPFLSKITGVPMA 799



 Score = 64.4 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 42/260 (16%), Positives = 96/260 (36%), Gaps = 13/260 (5%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMR 95
             V  ++   +PD     L G  G +  V+     ILE   +    + + A   + D+  
Sbjct: 18  EFVSRIIRKERPDALLPTLGGQTGLNMAVELAKSGILEECGVEILGTKLSAIEQAEDRDL 77

Query: 96  SKQVVSSCGVPVCPSILVNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153
            + ++     P+  S +++      +    I  P +++P       G  +   ++ +   
Sbjct: 78  FRTLMQELNEPIPSSTIIHTLEEAHEFVKEIGYPVIVRPAFTMGGTGGGICNNEEELIEI 137

Query: 154 LLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212
           +      +   Q L+E+ + G  E+   VM D++ +   I V   +       ++  +  
Sbjct: 138 VSGGLKHSPVTQCLLEKSIAGCKEIEYEVMRDSNDNA--IVVCNMENIDPVGVHTGDSIV 195

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
                 +    Y+ ++  +    +A+G  G        DP S + + +E+N  P ++  S
Sbjct: 196 VAPSQTLSDREYQMLRNTSLRIIRALGIEGGCNVQLALDPHSFQYYVIEVN--PRVSRSS 253

Query: 273 IFPEMAAYAGYSFRELLLWM 292
                +   GY   +L   +
Sbjct: 254 --ALASKATGYPIAKLAAKI 271


>gi|269926271|ref|YP_003322894.1| protein of unknown function DUF201 [Thermobaculum terrenum ATCC
           BAA-798]
 gi|269789931|gb|ACZ42072.1| protein of unknown function DUF201 [Thermobaculum terrenum ATCC
           BAA-798]
          Length = 437

 Score = 65.5 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 46/243 (18%), Positives = 88/243 (36%), Gaps = 52/243 (21%)

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS---PPYVIK 131
           + +P   +   +  +S DK + ++ ++  G+        +R   D   L +    P VIK
Sbjct: 97  MGLP--GNTPQSVGISRDKSKLRETLTKAGLSNIRFYS-SRLDADEHTLATRSFYPCVIK 153

Query: 132 PLKGGSSLGIIVIKKDQSIPLD------LLQSSSWNHGDQLLIEQYVDGIELTC-GVMGD 184
           P+   +S G+I                 +L     +   Q+L+E+YV G E+   G++ +
Sbjct: 154 PVSLAASRGVIKANNPTEFIEAFSRIRNMLLEDGSDPSTQILVEEYVPGFEIAVDGLLTN 213

Query: 185 ASLDVTEI---AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241
             L +  I     P    +          + +V P+++  +I   V  L  LA +AIG +
Sbjct: 214 GELTLIAIFDKPDPMEGPF-------FEETIYVTPSRLSPNIQGRVVNLIQLASKAIGLK 266

Query: 242 -GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYA------------GYSFREL 288
            G   ++   +     +  +EI               A               G S  EL
Sbjct: 267 HGPIHAELRVN--DDSIHLIEI--------------AARAIGGKCSTILEYKLGMSLEEL 310

Query: 289 LLW 291
           ++ 
Sbjct: 311 IIR 313


>gi|195122837|ref|XP_002005917.1| GI20742 [Drosophila mojavensis]
 gi|193910985|gb|EDW09852.1| GI20742 [Drosophila mojavensis]
          Length = 1143

 Score = 65.5 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 80/221 (36%), Gaps = 21/221 (9%)

Query: 57  VLHGNFG----EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111
            +H  +G        VQA+ +   + +            DK+ ++    +  VP+ P   
Sbjct: 76  AVHPGYGFLSERSDFVQAVTD-AGVRFIGPSPKVVQNMGDKVAARTAAIAAKVPIVPGTD 134

Query: 112 -LVNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVI----KKDQSIPLDLLQSSSWNHGD 164
             VN     S        P ++K   GG   G+ V+    +  ++      ++ +     
Sbjct: 135 GPVNTKEEASAFCEKNGLPVILKAAHGGGGRGMRVVRKMEEVAENFERASSEAKAAFGNG 194

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLD 222
            + IE+Y++    +   ++GD + DV  +            K        + PA ++P +
Sbjct: 195 AMFIEKYIERPRHIEVQILGDKTGDVVHLYERDCSIQRRHQK-----VIEIAPAPRLPAE 249

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
              ++   A    + +G       +FL D      +++E+N
Sbjct: 250 TRDKMAEAAVRLAKHVGYENAGTVEFLCDESGN-FYFIEVN 289


>gi|254973905|ref|ZP_05270377.1| putative carbamoyl-phosphate synthase large chain [Clostridium
           difficile QCD-66c26]
 gi|255091291|ref|ZP_05320769.1| putative carbamoyl-phosphate synthase large chain [Clostridium
           difficile CIP 107932]
 gi|255312949|ref|ZP_05354532.1| putative carbamoyl-phosphate synthase large chain [Clostridium
           difficile QCD-76w55]
 gi|255515708|ref|ZP_05383384.1| putative carbamoyl-phosphate synthase large chain [Clostridium
           difficile QCD-97b34]
 gi|255648802|ref|ZP_05395704.1| putative carbamoyl-phosphate synthase large chain [Clostridium
           difficile QCD-37x79]
 gi|260682022|ref|YP_003213307.1| putative carbamoyl-phosphate-synthetase [Clostridium difficile
           CD196]
 gi|260685620|ref|YP_003216753.1| putative carbamoyl-phosphate-synthetase [Clostridium difficile
           R20291]
 gi|306518917|ref|ZP_07405264.1| putative carbamoyl-phosphate-synthetase [Clostridium difficile
           QCD-32g58]
 gi|260208185|emb|CBA60518.1| putative carbamoyl-phosphate-synthetase [Clostridium difficile
           CD196]
 gi|260211636|emb|CBE01884.1| putative carbamoyl-phosphate-synthetase [Clostridium difficile
           R20291]
          Length = 410

 Score = 65.5 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 36/206 (17%), Positives = 65/206 (31%), Gaps = 36/206 (17%)

Query: 34  SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYT------------H 81
             IDVD      +  +  D            DG++    + L  PY              
Sbjct: 44  EAIDVDVFDFDKIKSIAIDKKI---------DGILTGFTDSLMKPYVYIANELNLPCVIS 94

Query: 82  SGILASALSMDKMRSKQVVSSCGVPVCPSILVNR-FTMDSQHLISPPYVIKPLKGGSSLG 140
              L S    +K   K+   +  +P     ++     ++    ++ P VIKP+ G  S G
Sbjct: 95  CNQLESV--TNKAIMKKYFKNNAIPTTDYCIIESLKDLEKIQGLNFPLVIKPVDGYGSRG 152

Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL-----------TCGVMGDASLDV 189
           +  +   + +      S   +   Q++IE++ +  E+               +GD  L  
Sbjct: 153 VYFVSNIEELIEKFEYSKEASQDGQVIIEEFYESEEIQGLAWVHNGESHVFYIGDRELVN 212

Query: 190 TEIA-VPKSDFYSYELKYSSLNSTHV 214
                  K D   Y  KY       +
Sbjct: 213 IHTGRAGKPDRLLYPSKYCFQYEEEI 238


>gi|113460713|ref|YP_718780.1| acetyl-CoA carboxylase biotin carboxylase subunit [Haemophilus
           somnus 129PT]
 gi|112822756|gb|ABI24845.1| acetyl-CoA carboxylase carboxyltransferase subunit alpha
           [Haemophilus somnus 129PT]
          Length = 448

 Score = 65.5 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 40/223 (17%), Positives = 84/223 (37%), Gaps = 23/223 (10%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+      +E     +         L  DK+ +   +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAEQVERSGFIFIGPTADVIRLMGDKVSAINAMKKAGVPCVPGSDG 136

Query: 111 ---ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHG 163
                +N+   +    I  P +IK   GG   G+ V++ ++S+   +     ++ +  + 
Sbjct: 137 PLGADINK-NKEIAKRIGYPIIIKASGGGGGRGMRVVRDEKSLEESIAMTKAEAKAAFNN 195

Query: 164 DQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPL 221
           D + +E+Y++    +   V+ D   +   +A           K          PA  I  
Sbjct: 196 DMVYMEKYLENPRHIEIQVLADTHGNAIYLAERDCSMQRRHQK-----VVEEAPAPGISE 250

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           +  +++      A   IG RG    +FL+   + + +++E+N 
Sbjct: 251 ETRRDIGTRCANACIEIGYRGAGTFEFLY--ENGEFYFIEMNT 291


>gi|301169696|emb|CBW29297.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Haemophilus
           influenzae 10810]
          Length = 448

 Score = 65.5 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 40/225 (17%), Positives = 85/225 (37%), Gaps = 27/225 (12%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+      +E     +         L  DK+ + + +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAEQVERSGFTFIGPTADVIRLMGDKVSAIKAMKKAGVPCVPGSDG 136

Query: 111 -----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWN 161
                I  N+   +    I  P +IK   GG   G+ V++ + ++   +     ++ +  
Sbjct: 137 PVSNDIAKNK---EIAKRIGYPIIIKASGGGGGRGMRVVRSEDALEESIAMTKAEAKAAF 193

Query: 162 HGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-I 219
           + D + +E+Y++    +   V+ D   +   +A           K          PA  I
Sbjct: 194 NNDMVYMEKYLENPRHVEIQVLADTHGNAVYLAERDCSMQRRHQK-----VVEEAPAPGI 248

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             ++ +++      A   IG RG    +FL+   + + +++E+N 
Sbjct: 249 TEEVRRDIGSRCANACVEIGYRGAGTFEFLY--ENGEFYFIEMNT 291


>gi|311108316|ref|YP_003981169.1| methylcrotonoyl-CoA carboxylase subunit alpha 2 [Achromobacter
           xylosoxidans A8]
 gi|310763005|gb|ADP18454.1| methylcrotonoyl-CoA carboxylase alpha subunit 2 [Achromobacter
           xylosoxidans A8]
          Length = 676

 Score = 65.5 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 38/215 (17%), Positives = 81/215 (37%), Gaps = 14/215 (6%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
           +G   E+    A +E   + +      A     +K R+K  +S   VP  P       ++
Sbjct: 90  YGFLAENEAFAAAVEQAGLVFVGPPAAAIGAMGNKARAKAAMSRADVPCIPGYQGADQSI 149

Query: 119 DS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQLLIEQ 170
           D+       I  P ++K   GG   G+ +++   ++P  L  + S        D+L++E+
Sbjct: 150 DAFVRAAGDIGFPVMVKAAAGGGGRGMRLVRDPAALPAALASARSEAAAAFGSDELILEK 209

Query: 171 YVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
            ++    +   V+ D+   V  +            K             +   +   + +
Sbjct: 210 AIERPRHVEIQVLADSHGHVIHLGERDCSVQRRHQKII----EEAPSPAVDDALRASMGQ 265

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            A  + +A+G +G    +FL  P     +++E+N 
Sbjct: 266 AAVRSARALGYQGAGTMEFLLAP-DGSYYFMEMNT 299


>gi|239979324|ref|ZP_04701848.1| phosphoribosylglycinamide synthetase [Streptomyces albus J1074]
 gi|291451199|ref|ZP_06590589.1| phosphoribosylglycinamide synthetase [Streptomyces albus J1074]
 gi|291354148|gb|EFE81050.1| phosphoribosylglycinamide synthetase [Streptomyces albus J1074]
          Length = 411

 Score = 65.5 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 64/160 (40%), Gaps = 14/160 (8%)

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
              DK  +++++   G+P     L +  R   +    +  P V+KP     S+G++ +++
Sbjct: 103 RCRDKYLTRRLLDEAGLPAVRHGLAHTAREAEEIAARLGFPVVVKPRALAGSVGVVRVEE 162

Query: 147 DQSIPLDLLQSSSWNH-----GDQLLIEQYVDGIELTC--GVMGDASLDVTEIAVPKSDF 199
             ++      +    +     G  +L+E+++DG E++    V+ D  +   ++A  +  +
Sbjct: 163 PAAVAAAFELAGGAGYATLPNGHGILVEEFLDGPEISVDSAVL-DGEVSCVQVAAKRLGY 221

Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
                 +       V           EV  L   AH A+G
Sbjct: 222 ----APHFEETGHLVKGWDGTEPWADEVHALVTAAHTALG 257


>gi|228966839|ref|ZP_04127883.1| Carbamoyl-phosphate synthase large chain [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228792938|gb|EEM40496.1| Carbamoyl-phosphate synthase large chain [Bacillus thuringiensis
           serovar sotto str. T04001]
          Length = 1018

 Score = 65.5 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 42/260 (16%), Positives = 96/260 (36%), Gaps = 13/260 (5%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMR 95
             V  ++   +PD     L G  G +  V+     ILE   +    + + A   + D+  
Sbjct: 18  EFVSRIIRKERPDAILPTLGGQTGLNMAVELAKSGILEECGVEILGTKLSAIEQAEDRDL 77

Query: 96  SKQVVSSCGVPVCPSILVNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153
            + ++     P+  S +++      +    I  P +++P       G  +   ++ +   
Sbjct: 78  FRTLMQELNEPIPSSTIIHTLEEAHEFVKEIGYPVIVRPAFTMGGTGGGICSNEEELIEI 137

Query: 154 LLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212
           +      +   Q L+E+ + G  E+   VM D++ +   I V   +       ++  +  
Sbjct: 138 VSGGLKHSPVTQCLLEKSIAGCKEIEYEVMRDSNDNA--IVVCNMENIDPVGVHTGDSIV 195

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
                 +    Y+ ++  +    +A+G  G        DP S + + +E+N  P ++  S
Sbjct: 196 VAPSQTLSDREYQMLRNTSLRIIRALGIEGGCNVQLALDPHSFQYYVIEVN--PRVSRSS 253

Query: 273 IFPEMAAYAGYSFRELLLWM 292
                +   GY   +L   +
Sbjct: 254 --ALASKATGYPIAKLAAKI 271



 Score = 64.4 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/221 (11%), Positives = 80/221 (36%), Gaps = 20/221 (9%)

Query: 68  VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLIS 125
           + A LE   +    + +     + D+ + +  ++  G+P             +     I 
Sbjct: 588 LAAKLEEHGVKILGTSLEDLDRAEDRDKFEAALTQLGIPQPVGKTATTVEQAVAIAEEIG 647

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            P +++P        + ++ + + +   +  +   +    +LI++Y+ G E+    + D 
Sbjct: 648 YPVLVRPSYVLGGRAMEIVYRQEELLHYMKNAVKVHAEHPVLIDRYMVGKEIEVDAISDG 707

Query: 186 S---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCR 241
               +      + ++  +S        +S  V P + +   + +++        + +   
Sbjct: 708 ENVFIPGIMEHIERAGVHS-------GDSIGVYPPQSLSEKLKEQIIEHTIALGKGLNIV 760

Query: 242 GISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277
           G+    F+      +V+ +E+N       P ++ ++  P  
Sbjct: 761 GLLNIQFVVFK--DQVYVIEVNPRASRTVPFLSKITGVPMA 799


>gi|85712941|ref|ZP_01043981.1| carbamoyl-phosphate synthase large subunit [Idiomarina baltica
           OS145]
 gi|85693247|gb|EAQ31205.1| carbamoyl-phosphate synthase large subunit [Idiomarina baltica
           OS145]
          Length = 1074

 Score = 65.5 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 41/278 (14%), Positives = 99/278 (35%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D +              V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVEKIIERERPDAILP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      +L+  ++    +   A   + ++ R  + +   G+    + +
Sbjct: 89  TMGGQTALNCALDLDRHGVLDRFKVEMIGANADAIDKAENRDRFDKAMKKIGLETPNAEM 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +      D    +  P +I+P       G  +    +       +    +  ++LLI++
Sbjct: 149 AHSMEEAFDVLDRLGFPCIIRPSFTMGGSGGGIAYNREEFEEICRRGLDLSPTNELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAK-IPLDIYKEV 227
            + G  E    V+ D S +   +   ++    ++       +S  V PA+ +    ++ +
Sbjct: 209 SLLGWKEYEMEVVRDKSDNCIIVCTIEN----FDPMGIHTGDSITVAPAQTLTDKEFQLM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  A    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RDAAMAVLREIGVETGGSNVQFGLNPDTGRMVIIEMNP 302



 Score = 56.3 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 27/196 (13%), Positives = 73/196 (37%), Gaps = 8/196 (4%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYV 129
           LE   +P   +   A   S D+ R +  V+   +    +  V      +     I  P V
Sbjct: 653 LEANGVPIIGTSPDAIDRSEDRERFQAAVNRLKLKQPENSTVTGISEALTEAKRIGYPLV 712

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLD 188
           ++P        + ++  +Q +   L  +   ++   +L+++++D  IE+    + D    
Sbjct: 713 VRPSYVLGGRAMEIVYDEQDLTRYLTDAVKVSNDAPVLLDRFLDNAIEVDVDAICDGEDV 772

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           +    +   +       +S  ++  + P  +   I  +++         +  +G+  + F
Sbjct: 773 LIGGIMQHIEEAGV---HSGDSACSLPPYSLSDIIQAQLREQIRKLAFELNVKGLMNAQF 829

Query: 249 LFDPLSRKVFWLEINV 264
                  +++ +E+N 
Sbjct: 830 AV--KDDEIYLIEVNP 843


>gi|83854790|ref|ZP_00948320.1| carbamoyl-phosphate synthase large subunit [Sulfitobacter sp.
           NAS-14.1]
 gi|83842633|gb|EAP81800.1| carbamoyl-phosphate synthase large subunit [Sulfitobacter sp.
           NAS-14.1]
          Length = 1119

 Score = 65.5 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 47/268 (17%), Positives = 101/268 (37%), Gaps = 35/268 (13%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAI---- 71
           AL DAG++   +         D D S  L    +  +    +L     E+G +  +    
Sbjct: 612 ALTDAGYETIMVNCNPETVSTDYDTSDRLYFEPVTFEHVMEILRVEQ-ENGTLHGVIVQF 670

Query: 72  -----------LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTM 118
                      L+   IP   +      L+ D+ R +Q+V S G+    + +   +   +
Sbjct: 671 GGQTPLKIAQALQEAGIPILGTTPDMIDLAEDRERFQQLVQSLGLKQPHNGIAHSDAEAL 730

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IEL 177
           +    I  P VI+P        + +++   S+   +  +   +    +L++ Y+ G +EL
Sbjct: 731 EIAADIGFPLVIRPSYVLGGRAMEIVRDQASLERYIRDAVVVSGKSPVLLDHYLSGAVEL 790

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELK-YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
               + D     T++ V     +  E   +S  ++  + P  +  +I  EV++       
Sbjct: 791 DVDALSDG----TDVHVAGIMQHIEEAGVHSGDSACSLPPYSLSREIIAEVEKQTKALAL 846

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINV 264
           A+   G+    F       +++ +E+N 
Sbjct: 847 ALNVVGLMNIQFAV--KDGEIYLIEVNP 872



 Score = 54.4 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 44/291 (15%), Positives = 96/291 (32%), Gaps = 48/291 (16%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G++V  +         D                V  ++   +PD    
Sbjct: 29  SGAQACKALKEEGYRVILVNSNPATIMTDPGLADATYIEPITPEIVAKIIEKERPDALLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G  G +  +      +LE   +    +   A  ++ D+   ++ +   G+    + +
Sbjct: 89  TMGGQTGLNTSLALEEMGVLEKFNVEMIGAKREAIEMAEDRKLFREAMDRLGIENPKATI 148

Query: 113 VN---------------RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
           V                +  +D+   +  P +I+P       G  V              
Sbjct: 149 VTAPVAASGKKDLAAGVQLALDALEYVGLPAIIRPAFTMGGTGGGVAYNRDDYEFYCRSG 208

Query: 158 SSWNHGDQLLIEQYVDG-IELTCGVMGDASL-DVTEIAVPKSDFYSYELKYSSLNSTHVL 215
              +   Q+LI++ + G  E    V+ D +   +   ++   D           +S  V 
Sbjct: 209 MDASPMGQILIDESLLGWKEYEMEVVRDTADNAIIVCSIENVDPMGVHT----GDSITVA 264

Query: 216 PA-KIPLDIYKEVQRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           PA  +    Y+ ++  +    + IG   G S   +  +P   ++  +E+N 
Sbjct: 265 PALTLTDKEYQIMRNHSIAVLREIGVETGGSNVQWAVNPEDGRMVVIEMNP 315


>gi|145628091|ref|ZP_01783892.1| biotin carboxylase subunit [Haemophilus influenzae 22.1-21]
 gi|145630067|ref|ZP_01785849.1| acetyl-CoA carboxylase [Haemophilus influenzae R3021]
 gi|145638206|ref|ZP_01793816.1| biotin carboxylase subunit [Haemophilus influenzae PittII]
 gi|144979866|gb|EDJ89525.1| biotin carboxylase subunit [Haemophilus influenzae 22.1-21]
 gi|144984348|gb|EDJ91771.1| acetyl-CoA carboxylase [Haemophilus influenzae R3021]
 gi|145272535|gb|EDK12442.1| biotin carboxylase subunit [Haemophilus influenzae PittII]
 gi|309751361|gb|ADO81345.1| Acetyl-CoA carboxylase, biotin carboxylase subunit [Haemophilus
           influenzae R2866]
          Length = 448

 Score = 65.5 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 40/225 (17%), Positives = 85/225 (37%), Gaps = 27/225 (12%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+      +E     +         L  DK+ + + +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAEQVERSGFTFIGPTADVIRLMGDKVSAIKAMKKAGVPCVPGSDG 136

Query: 111 -----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWN 161
                I  N+   +    I  P +IK   GG   G+ V++ + ++   +     ++ +  
Sbjct: 137 PVSNDIAKNK---EIAKRIGYPIIIKASGGGGGRGMRVVRSEDALEESIAMTKAEAKAAF 193

Query: 162 HGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-I 219
           + D + +E+Y++    +   V+ D   +   +A           K          PA  I
Sbjct: 194 NNDMVYMEKYLENPRHVEIQVLSDTHGNAVYLAERDCSMQRRHQK-----VVEEAPAPGI 248

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             ++ +++      A   IG RG    +FL+   + + +++E+N 
Sbjct: 249 TEEVRRDIGSRCANACVEIGYRGAGTFEFLY--ENGEFYFIEMNT 291


>gi|330814690|ref|YP_004362865.1| hypothetical protein bgla_4p2740 [Burkholderia gladioli BSR3]
 gi|327374682|gb|AEA66033.1| hypothetical protein bgla_4p2740 [Burkholderia gladioli BSR3]
          Length = 426

 Score = 65.5 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 39/231 (16%), Positives = 83/231 (35%), Gaps = 36/231 (15%)

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYVIKP 132
             + Y      + +++ +K   K+     G+P       +       +   I  P VIKP
Sbjct: 100 YGLRYL--SAHSISMARNKTAMKRAFRESGLPTPRFAGFSTLPELRSTMGAIGYPAVIKP 157

Query: 133 LKGGSSLGIIVIKKDQSIPL------DLLQSSSWNHG---DQLLIEQYVDG-IELTCGVM 182
              G S G+ +I     +        D +   + + G   D   IE+Y+    E++  V+
Sbjct: 158 TNFGGSEGVRMIHDASGLEEGFRYVHDAMHEHARDFGLAEDSFQIEEYIAAEREISVEVL 217

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC-R 241
                      V  +D +     Y    + H +P+ +  +  + ++ +A  A +A+   R
Sbjct: 218 NG---PGYRRVVGMTDKFLSPPPY-FAETGHSVPSVLSGN--EVLESVAMKACEALDMDR 271

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           G++  +      + +   +E+N              A  AG    +L+  +
Sbjct: 272 GVAHVEMRIR-DNGEPMLMEVN--------------ARIAGDGIPDLVERV 307


>gi|228960452|ref|ZP_04122103.1| Biotin carboxylase [Bacillus thuringiensis serovar pakistani str.
           T13001]
 gi|229047880|ref|ZP_04193456.1| Biotin carboxylase [Bacillus cereus AH676]
 gi|229111659|ref|ZP_04241209.1| Biotin carboxylase [Bacillus cereus Rock1-15]
 gi|229146759|ref|ZP_04275124.1| Biotin carboxylase [Bacillus cereus BDRD-ST24]
 gi|296504673|ref|YP_003666373.1| acetyl-CoA carboxylase biotin carboxylase subunit [Bacillus
           thuringiensis BMB171]
 gi|228636587|gb|EEK93052.1| Biotin carboxylase [Bacillus cereus BDRD-ST24]
 gi|228671794|gb|EEL27088.1| Biotin carboxylase [Bacillus cereus Rock1-15]
 gi|228723337|gb|EEL74706.1| Biotin carboxylase [Bacillus cereus AH676]
 gi|228799216|gb|EEM46182.1| Biotin carboxylase [Bacillus thuringiensis serovar pakistani str.
           T13001]
 gi|296325725|gb|ADH08653.1| acetyl-CoA carboxylase biotin carboxylase subunit [Bacillus
           thuringiensis BMB171]
          Length = 450

 Score = 65.5 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 85/220 (38%), Gaps = 16/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     +     + +      A +    K  ++  +   GVP+ P    
Sbjct: 77  AIHPGYGFLAENADFAELCRECNLIFIGPSPEAISKMGTKDVARDTMKEAGVPIVPGSQG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----QSSSWNHGDQ 165
            I      ++  + I  P +IK   GG   GI V + ++ +   +     ++S+      
Sbjct: 137 IIKNTEEAIELANQIGYPVIIKATAGGGGKGIRVARHEEELIKGIQITQQEASTAFGNPG 196

Query: 166 LLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +E+YV+    +   +M D   +   +            K    + +   PA +  +I 
Sbjct: 197 VYLEKYVEDFRHVEIQIMADTHGNAIHLGERDCTIQRRLQKLLEESPS---PA-LDEEIR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K++   A  A  A+   G    +F+++  ++  +++E+N 
Sbjct: 253 KQMGEAAVKAAVAVDYTGAGTVEFIYEYKTKTFYFMEMNT 292


>gi|91201194|emb|CAJ74254.1| strongly similar to carbamoyl-phosphate synthase
           (glutamine-hydrolyzing) [Candidatus Kuenenia
           stuttgartiensis]
          Length = 1091

 Score = 65.5 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 49/278 (17%), Positives = 97/278 (34%), Gaps = 35/278 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVDRSVGLVLAHL---------------------KPDLAFN 56
           SG     AL + G+ V  ++ + +  +    +                     +P     
Sbjct: 29  SGTQACHALREEGYTVILVNSNPATIMTDPEVADKTYIEPITTEIITKIIEKERPQAILP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G  G +  V    + +L+   +    + + A  ++ D+ + K  +   GV V  S+ 
Sbjct: 89  TLGGQTGLNAAVSLAEKGVLDKFNVELIGAKLKAIKMAEDRSQFKAAMGRIGVQVPESVY 148

Query: 113 VNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           VN     +     I  P +I+        G       +     +      +   ++L+E+
Sbjct: 149 VNSLDTALKIIDAIGFPAIIRASFTLGGSGGSTAYNIEEYKEYITTGLETSPIHEVLVER 208

Query: 171 YVDG-IELTCGVMGD-ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
            V G  E    VM D     V   ++   D           +S  V PA+ +    Y+++
Sbjct: 209 SVLGWKEYELEVMRDLKDNVVIICSIENFDPMGVHT----GDSITVAPAQTLTDMEYQKM 264

Query: 228 QRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +  A    + IG   G S   F  +P + ++  +E+N 
Sbjct: 265 RDAAVRIIREIGVETGGSNIQFAVNPENGEMLAIEMNP 302



 Score = 56.3 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 39/269 (14%), Positives = 95/269 (35%), Gaps = 32/269 (11%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ------ 69
           AL++ G++   +         D D S  L    L  +    ++H    E  +VQ      
Sbjct: 606 ALKELGYETIMVNCNPETVSTDYDTSDRLYFEPLTMEDVLEIIHKEKPEGVIVQFGGQTP 665

Query: 70  ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--QHL 123
                 LE   +    +      ++ D+ R   +++  G+    +   N           
Sbjct: 666 LKLAVPLEKEGVKILGTSPENIDVAEDRERFALLMNRLGLKQPENGCANSAEDAKMIAKR 725

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVM 182
           I  P +++P        + ++  +Q +   +  +   +H   +LI+ ++ D IE+    +
Sbjct: 726 IGYPVLLRPSYVLGGSAMRIVYDEQGLEHYISHAVEVSHEHPVLIDSFLQDAIEIDVDAI 785

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D         +   +       +S  ++  + P  +  +I +E+++   +   A+   G
Sbjct: 786 SDGEEVFIGGVMEHIEEAGV---HSGDSACSLPPYSVNNEIIEELKKETRIIALALNVIG 842

Query: 243 ISRSDFLFDPLSRKVFWLEIN-----VQP 266
           +    +      + ++ LE+N       P
Sbjct: 843 LINIQYAV--KDKVIYVLEVNPRASRTIP 869


>gi|254171886|ref|ZP_04878562.1| phosphoribosylglycinamide formyltransferase 2 [Thermococcus sp.
           AM4]
 gi|214033782|gb|EEB74608.1| phosphoribosylglycinamide formyltransferase 2 [Thermococcus sp.
           AM4]
          Length = 430

 Score = 65.5 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 50/296 (16%), Positives = 101/296 (34%), Gaps = 44/296 (14%)

Query: 19  GKACASALEDAGFKVSQID--------------------VDRSVGLVLAHLKPDLAFNVL 58
           GK  A   +  G +V  +D                        +  V+   KPD     +
Sbjct: 28  GKEIAIEAQRLGVEVVAVDRYASAPAMQVAHRSYVSDMRNADFLFSVIEREKPDAIIPEI 87

Query: 59  HGNFGEDGLVQAILELLEIPY-THSGILASALSMDKMRSKQ-VVSSCGVPVCPSILVNRF 116
                    + A+ EL +  Y       A+ ++M + R+++ +     VP          
Sbjct: 88  EAIN-----LDALFELEKDGYFVVPNAKATWIAMHRERTRETLAKEAKVPTSRYAYATTL 142

Query: 117 TM--DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD--LLQSSSWNHGDQLLIEQYV 172
               ++   I  P   K +   S  G   +K  + IP    + +  +    D++++E+++
Sbjct: 143 DELYEACEKIGYPCHTKAIMSSSGKGSYFVKGPEDIPKAWEVAKKKARGSADKIIVEEHI 202

Query: 173 DGIELTCGVMG----DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           D  ++    +     D + +V          Y  +  Y S       PA+I     +EV 
Sbjct: 203 D-FDVEVTELAVRHYDENGEVVTTFPKPVGHYQIDGDYHSSW----QPAEILERAEREVY 257

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
           R+A      +G  G+   +        KV+  E++ +P      +    +   G+S
Sbjct: 258 RIAKRITDVLGGLGLFGVEMFV--KGDKVWANEVSPRP--HDTGMVTLASHPTGFS 309


>gi|33867049|ref|NP_898608.1| phosphoribosylglycinamide formyltransferase 2 [Synechococcus sp. WH
           8102]
 gi|81573594|sp|Q7U3B3|PURT_SYNPX RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|33639650|emb|CAE09034.1| GAR transformylase 2 [Synechococcus sp. WH 8102]
          Length = 388

 Score = 65.5 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 35/247 (14%), Positives = 88/247 (35%), Gaps = 30/247 (12%)

Query: 32  KVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAI--LELLEIPYTHSGILASAL 89
           +V  +    ++   +   +PD+    +         V A+  LE   I        A+A+
Sbjct: 50  EVLAMTDTDALLATVRRHRPDVVIPEIEAL-----AVSALAELEQDGITVI-PTARATAV 103

Query: 90  SMDKMRSKQVVSS-CGVPVCPSILVNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           +M++ R + + +    +                    +  P V+KP+   S  G  V+  
Sbjct: 104 TMNRDRIRDLAAGELALRSARFAYAASAEELRAEAPALGWPVVVKPVMSSSGKGQSVVDG 163

Query: 147 DQSIPLD--LLQSSSWNHGDQLLIEQYVDGIELTCGVM-----GDASLDVTEIAVPKSDF 199
              +        + +     ++++E+++   +L   ++        +L    I   + + 
Sbjct: 164 PDGLDQAWDAAMAGARGTSPRVIVEEFLR-FDLEITLLTIRQHNGETLFCAPIG-HEQEH 221

Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
             Y+  +         PA++  +   + Q +A    Q +G  G+   +F       +V +
Sbjct: 222 GDYQCSW--------QPAELSSEQLHQAQAMARTVTQNLGGVGLFGVEFFL--CGDEVIF 271

Query: 260 LEINVQP 266
            E++ +P
Sbjct: 272 SELSPRP 278


>gi|295134409|ref|YP_003585085.1| glutathione synthase/ribosomal protein S6 modification enzyme
           [Zunongwangia profunda SM-A87]
 gi|294982424|gb|ADF52889.1| glutathione synthase/ribosomal protein S6 modification enzyme
           [Zunongwangia profunda SM-A87]
          Length = 483

 Score = 65.5 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 28/181 (15%), Positives = 68/181 (37%), Gaps = 10/181 (5%)

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMD-SQHLISPPYVIKPLKGGSSLGIIVIKKDQ 148
             +K+   + + + G+P   ++++++   D     I  P V+K      S G+   K  +
Sbjct: 279 CCNKVFMAEALQNAGIPTPKTMIIHKENKDLVIDEIGLPVVLKSPDSTFSFGVKKAKTQE 338

Query: 149 SIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVMGDASLDVTEIAVPKS--DFYSYELK 205
                 L +      + ++ +Q+     +   GV+   +       + K     Y++  K
Sbjct: 339 EYKE--LVTKMLKESELIIAQQFTPSDYDWRIGVLDGKAFYACRYYMAKGHWQIYNWSAK 396

Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                  +     +   + ++V  LA  + + +G  G+   D     ++ +   +EIN  
Sbjct: 397 KKDDQDGNADAMAL-EKVPEKVLDLALRSAKLMG-DGLYGID--VKQINGEALVIEINDN 452

Query: 266 P 266
           P
Sbjct: 453 P 453


>gi|304384785|ref|ZP_07367131.1| acetyl-CoA carboxylase subunit A [Pediococcus acidilactici DSM
           20284]
 gi|304328979|gb|EFL96199.1| acetyl-CoA carboxylase subunit A [Pediococcus acidilactici DSM
           20284]
          Length = 455

 Score = 65.5 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 68/220 (30%), Gaps = 17/220 (7%)

Query: 57  VLHGNFG---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H  +G   E+     + E   + +         L  +K R+++ + S  VPV P    
Sbjct: 77  AIHPGYGFLSENAEFARLCEESNLKFIGPSYQTIELMGNKSRARETMISANVPVIPGSNG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQ 165
            +      M     I  P ++K   GG   GI  I     +      +            
Sbjct: 137 MVRDLENAMVVAEQIGYPVMLKAADGGGGKGIRRINSPDELKKAYQAAQREAQTSFGNAD 196

Query: 166 LLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           L +E+ ++    +   V+ D       +            K           A I     
Sbjct: 197 LYLEKIIENAKHIEMQVIADQYGHYVFLPERDCSLQRTNQK----VIEETPCAVISHTER 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           + +  +   A +AI        +FL D      +++E+N 
Sbjct: 253 ETLGEIVVRAAKAIKYYNTGTIEFLMD-QDHHFYFMEMNT 291


>gi|262091722|gb|ACY25312.1| carbamoyl-phosphate synthase large subunit [uncultured
           actinobacterium]
          Length = 1098

 Score = 65.5 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 53/287 (18%), Positives = 94/287 (32%), Gaps = 52/287 (18%)

Query: 18  SGKACASALEDAGFKVSQ---------IDVD------------RSVGLVLAHLKPDLAFN 56
           SG      L + G++V            D D              +  ++   KPD    
Sbjct: 29  SGTQACRVLREEGYRVILANSNPATIMTDPDFADRTYIEPLTVEVLSAIIDREKPDAVLP 88

Query: 57  VLHGNFGEDGLVQAILELL---------EIPYT----HSGILASALSMDKMRSKQVVSSC 103
            L G        Q  L L           +P T     +   A A + D+ + K  +   
Sbjct: 89  TLGG--------QTALNLAMELFAIGKVGVPGTPELIGANAEAIATAEDREKFKLAMIEI 140

Query: 104 GVPVCPSILVNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN 161
           G+ V  S + +      +    I  P +I+P       G  +    +          + +
Sbjct: 141 GLKVPRSGVAHNMQEAEKVCLQIGLPIIIRPAYILGGRGTGIAHTPEEFTRLAANGIAAS 200

Query: 162 HGDQLLIEQYVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK- 218
              ++LIE+ + G  E    VM D + + V   ++   D           +S  V PA  
Sbjct: 201 PIGEILIEESIAGWKEYELEVMRDKADNCVIICSIENVDPMGVHT----GDSITVAPAMT 256

Query: 219 IPLDIYKEVQRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINV 264
           +    Y+ ++  AF   + +G   G S   F  +P +     +E+N 
Sbjct: 257 LSDVEYQVMRDAAFACIRRVGVETGGSNVQFAVNPKNGDQVVIEMNP 303



 Score = 59.8 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 51/310 (16%), Positives = 110/310 (35%), Gaps = 48/310 (15%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ------ 69
           AL +AG++   +         D D S  L    L  +   NV+     E    Q      
Sbjct: 589 ALREAGYETVMVNCNPETVSTDYDTSDRLYFEPLTREDVMNVIE---AESRASQIPPRVI 645

Query: 70  -AI-----LELLE-IP---YTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFT 117
            ++     L+L   IP      +   +  L+ D+ +   + +S G+   P    L     
Sbjct: 646 VSLGGQTPLKLANLIPSELIAGTHPSSIDLAEDREKWSALCNSLGIAQPPGGTALSYEEA 705

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN---------HGDQLLI 168
           +     +  P +++P        + ++  D  +   + + ++               +LI
Sbjct: 706 LVVAKQVGYPVLVRPSYVLGGRAMQIVHDDAHLQRAMQEIAAAGSLGREGGLSFERPVLI 765

Query: 169 EQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227
           ++++ D  E+    + D+  +V    V   +       +S  ++  + P  +   + + V
Sbjct: 766 DRFLDDATEIDVDAIRDSVGEVLIGGV--MEHVEEAGVHSGDSACAIPPPTLEPWVIEAV 823

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287
           +    +  QA+G  G+    F        V+ +E N +   T     P +A   G S  +
Sbjct: 824 ESYTRVIAQALGVIGLINVQFAV--AGNAVYVIEANPRASRT----VPFVAKATGVSLAK 877

Query: 288 LLLWMVEDAS 297
           +   ++  AS
Sbjct: 878 VASRVMLGAS 887


>gi|237811773|ref|YP_002896224.1| carbamoyl-phosphate synthase, large subunit [Burkholderia
           pseudomallei MSHR346]
 gi|237506191|gb|ACQ98509.1| carbamoyl-phosphate synthase, large subunit [Burkholderia
           pseudomallei MSHR346]
          Length = 1084

 Score = 65.5 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 49/285 (17%), Positives = 97/285 (34%), Gaps = 42/285 (14%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +              DV          V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYKVILVNSNPATIMTDPNTADVTYIEPITWEVVERIIAKERPDAILP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G    +  +      +LE   +    +   A   + D+ + K  ++  G+    S  
Sbjct: 89  TMGGQTALNCALDLFHHGVLEKYGVELIGASPEAIDKAEDRQKFKDAMTKIGLGSAKSGI 148

Query: 111 -------ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
                  + V+     +      P VI+P       G  +    +       +    +  
Sbjct: 149 AHSMEEALKVHADIAAATGGSGYPVVIRPSFTLGGSGGGIAYNREEFEEICKRGLDLSPT 208

Query: 164 DQLLIEQYVDG-IELTCGVMGDASLD-VTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IP 220
            +LLIE+ + G  E    V+ D + + +   ++   D           +S  V PA+ + 
Sbjct: 209 RELLIEESLLGWKEYEMEVVRDRADNCIIVCSIENLDPMGVHT----GDSITVAPAQTLT 264

Query: 221 LDIYKEVQRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINV 264
              Y+ ++  +    + IG   G S   F  +P   ++  +E+N 
Sbjct: 265 DKEYQILRNASLAVLREIGVDTGGSNVQFSINPKDGRMVVIEMNP 309



 Score = 64.4 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/203 (13%), Positives = 74/203 (36%), Gaps = 13/203 (6%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--MDSQHLISPPYV 129
           LE   +P   +       + D+ R ++++   G+   P+         +     I  P V
Sbjct: 655 LEAHGVPIIGTSPDMIDAAEDRERFQKLLQDLGLRQPPNRTARAEDEALALAGEIGYPLV 714

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLD 188
           ++P        + ++ + + +   + ++   ++   +L+++++ D IE     + D    
Sbjct: 715 VRPSYVLGGRAMEIVHEPRDLERYMREAVKVSNDSPVLLDRFLNDAIECDVDCICDGDAV 774

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                +   +       +S  ++  + P  +      E++R      +A+   G+    F
Sbjct: 775 FIGGVMEHIEQAGV---HSGDSACSLPPYSLSTQTVAELKRQTGAMAKALNVVGLMNVQF 831

Query: 249 LFDPLSRK-------VFWLEINV 264
               + R        ++ LE+N 
Sbjct: 832 AIQQVPRPDGSKEDIIYVLEVNP 854


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.317    0.168    0.529 

Lambda     K      H
   0.267   0.0513    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,601,491,568
Number of Sequences: 14124377
Number of extensions: 317548855
Number of successful extensions: 924489
Number of sequences better than 10.0: 10000
Number of HSP's better than 10.0 without gapping: 10692
Number of HSP's successfully gapped in prelim test: 15994
Number of HSP's that attempted gapping in prelim test: 855033
Number of HSP's gapped (non-prelim): 34531
length of query: 300
length of database: 4,842,793,630
effective HSP length: 138
effective length of query: 162
effective length of database: 2,893,629,604
effective search space: 468767995848
effective search space used: 468767995848
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.3 bits)
S2: 81 (35.5 bits)